Sequence	Length	Modifications	Modified sequence	Carbamidomethyl (C) Probabilities	Oxidation (M) Probabilities	Carbamidomethyl (C) Score Diffs	Oxidation (M) Score Diffs	Acetyl (Protein N-term)	Carbamidomethyl (C)	Oxidation (M)	Missed cleavages	Proteins	Leading proteins	Leading razor protein	Type	Raw file	Experiment	MS/MS m/z	Charge	m/z	Mass	Uncalibrated - Calibrated m/z [ppm]	Uncalibrated - Calibrated m/z [Da]	Mass error [ppm]	Mass error [Da]	Uncalibrated mass error [ppm]	Uncalibrated mass error [Da]	Max intensity m/z 0	Retention time	Retention length	Calibrated retention time	Calibrated retention time start	Calibrated retention time finish	Retention time calibration	Match time difference	Match m/z difference	Match q-value	Match score	Number of data points	Number of scans	Number of isotopic peaks	PIF	Fraction of total spectrum	Base peak fraction	PEP	MS/MS count	MS/MS scan number	MS/MS scan numbers	MS3 scan numbers	Score	Delta score	Combinatorics	Intensity	Reverse	Potential contaminant	id	Protein group IDs	Peptide ID	Mod. peptide ID	MS/MS IDs	Best MS/MS	Carbamidomethyl (C) site IDs	Oxidation (M) site IDs	Taxonomy IDs	Taxonomy names	Mass deficit
AAAAAAAAHHL	11	Unmodified	_AAAAAAAAHHL_					0	0	0		ENSG00000130711|ENST00000253008|PRDM12	ENSG00000130711|ENST00000253008|PRDM12	ENSG00000130711|ENST00000253008|PRDM12	MULTI-SECPEP	A375_MHC_IP_R2	2	488.0575256347656	2	487.761958	973.509363	-0.59029	-0.00028792	-0.79533	-0.00038793	-1.3856	-0.00067585	487.76135038381983	77.419	0.50938	78.162	77.958	78.468	0.74293					13	9	2	0	0	0	0.90323	1	29480	29480		6.7232	2.3939	1	1237600			0	4268	0	0	0	0					0.021548387060761343
AAAAAAPHSY	10	Unmodified	_AAAAAAPHSY_					0	0	0			REV__ENSG00000187140|ENST00000371116|FOXD3	REV__ENSG00000187140|ENST00000371116|FOXD3	MULTI-MSMS	A375_MHC_IP_R2	2	466.6530456542969	2	465.227417	928.44028	-0.60129	-0.00027974	0.55671	0.000259	-0.044581	-2.074E-05	465.2274972252362	44.348	0.91211	45.117	44.631	45.543	0.7691					37	17	4	0	0	0	0.6806	1	16516	16516		14.838	0.25658	1	3128100	+		1	22011	1	1	1	1					-0.02680245313490559
AAAAAASRVP	10	Unmodified	_AAAAAASRVP_					0	0	0			REV__nc|ENSG00000166377|O43861-2|ATP9B	REV__nc|ENSG00000166377|O43861-2|ATP9B	MULTI-SECPEP	A375_MHC_IP_R2	2	443.15093994140625	2	442.751059	883.487565	-0.21057	-9.3229E-05	-0.23455	-0.00010385	-0.44512	-0.00019708	442.75094093933296	47.591	0.66008	48.352	48.073	48.733	0.76128					31	12	3	0	0	0	0.92389	1	17815	17815		3.9444	0	1	11539000	+		2	20673	2	2	2	2					0.0411603395750717
AAAAADEGPA	10	Unmodified	_AAAAADEGPA_					0	0	0		nc|ENSG00000178233|Q8IW70-2|TMEM151B;ENSG00000178233|ENST00000451188|TMEM151B	nc|ENSG00000178233|Q8IW70-2|TMEM151B	nc|ENSG00000178233|Q8IW70-2|TMEM151B	MSMS	A375_MHC_IP_R1	1	422.14178466796875	2	422.195782	842.377011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.293	1	36.293	35.793	36.793	0								0	0	0	0.15256	1	12138	12138		12.532	0	1				3	8147	3	3	3	3					-0.050482308213872784
AAAAAWKR	8	Unmodified	_AAAAAWKR_					0	0	0			REV__ENST00000355295.4_1_9:100174408-100190800:+|nuORF	REV__ENST00000355295.4_1_9:100174408-100190800:+|nuORF	MSMS	A375_MHC_IP_R1	1	422.6558837890625	2	422.743037	843.471521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.27	1	36.27	35.77	36.77	0								0	0	0	0.16876	1	12129	12129		11.114	2.5212	1		+		4	23819	4	4	4	4					0.04352372511266367
AAAAGRIAI	9	Unmodified	_AAAAGRIAI_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:806325-806721:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	407.6506042480469	2	407.250695	812.486836	-0.58696	-0.00023904	0.87006	0.00035433	0.2831	0.00011529	407.2509577308115	38.166	0.40751	38.166	37.964	38.371	0					13	7	3	0	0	0	0.53748	1	12943	12943		24.021	19.691	1	2605900			5	998	5	5	5	5					0.07309239308438009
AAAAGRIAI	9	Unmodified	_AAAAGRIAI_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:806325-806721:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MATCH	A375_MHC_IP_R2	2		2	407.250695	812.486836	-0.5231	-0.00021303	0.26027	0.00010599	-0.26284	-0.00010704	407.25083045997457	37.24	0.40657	38.011	37.816	38.223	0.7709	-0.077598	-0.00018444	NaN	46.021	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2063200			6	998	5	5							0.07309239308438009
AAAALARL	8	Unmodified	_AAAALARL_					0	0	0		ENSG00000167671|ENST00000301281|UBXN6;nc|ENSG00000167671|Q9BZV1-2|UBXN6	ENSG00000167671|ENST00000301281|UBXN6	ENSG00000167671|ENST00000301281|UBXN6	MULTI-MSMS	A375_MHC_IP_R2	2	379.1396484375	2	378.739963	755.465373	-0.034809	-1.3184E-05	0.050803	1.9241E-05	0.015994	6.0576E-06	378.7398984880148	41.449	0.45612	42.223	41.997	42.453	0.77451					14	8	2	0	0	0	0.078619	2	15380	15355;15380		98.807	11.725	1	4628300			7	7208	6	6	6;7	7					0.07785854279757132
AAAAQIRY	8	Unmodified	_AAAAQIRY_					0	0	0		PCDHGA6|p.P36S|1|0.36|ENSG00000253731|chr5:141374189-141374189|C/T|missense_variant;PCDHGA6|p.P36L|1|0.5|ENSG00000253731|chr5:141374190-141374190|C/T|missense_variant;nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6;ENSG00000253731|ENST00000517434|PCDHGA6	PCDHGA6|p.P36S|1|0.36|ENSG00000253731|chr5:141374189-141374189|C/T|missense_variant	PCDHGA6|p.P36S|1|0.36|ENSG00000253731|chr5:141374189-141374189|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	432.6401062011719	2	432.240327	862.466101	-0.56901	-0.00024595	0.20417	8.8249E-05	-0.36484	-0.0001577	432.2403729350299	29.618	0.54563	29.618	29.403	29.949	0					24	10	3	0	0	0	0.078619	1	9290	9290		98.807	13.535	1	164200000			8	9867	7	7	8	8					0.02936648928800878
AAAAQIRY	8	Unmodified	_AAAAQIRY_					0	0	0		PCDHGA6|p.P36S|1|0.36|ENSG00000253731|chr5:141374189-141374189|C/T|missense_variant;PCDHGA6|p.P36L|1|0.5|ENSG00000253731|chr5:141374190-141374190|C/T|missense_variant;nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6;ENSG00000253731|ENST00000517434|PCDHGA6	PCDHGA6|p.P36S|1|0.36|ENSG00000253731|chr5:141374189-141374189|C/T|missense_variant	PCDHGA6|p.P36S|1|0.36|ENSG00000253731|chr5:141374189-141374189|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	432.6401062011719	2	432.240327	862.466101	-0.99866	-0.00043166	0.14171	6.1255E-05	-0.85694	-0.00037041	432.2403847160191	28.911	0.39595	29.609	29.434	29.83	0.69872					18	7	3	0	0	0	0.01208	1	10022	10022		112.56	10.837	1	94082000			9	9867	7	7	9	9					0.02936648928800878
AAAAQIRY	8	Unmodified	_AAAAQIRY_					0	0	0		PCDHGA6|p.P36S|1|0.36|ENSG00000253731|chr5:141374189-141374189|C/T|missense_variant;PCDHGA6|p.P36L|1|0.5|ENSG00000253731|chr5:141374190-141374190|C/T|missense_variant;nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6;ENSG00000253731|ENST00000517434|PCDHGA6	PCDHGA6|p.P36S|1|0.36|ENSG00000253731|chr5:141374189-141374189|C/T|missense_variant	PCDHGA6|p.P36S|1|0.36|ENSG00000253731|chr5:141374189-141374189|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	863.8717041015625	1	863.473377	862.466101	-1.361	-0.0011752	-0.51543	-0.00044506	-1.8765	-0.0016203	863.4729758794638	28.911	0.29657	29.609	29.484	29.78	0.69872					8	5	2	0	0	0	0.14919	1	10087	10087		86.121	19.086	1	12178000			10	9867	7	7	10	10					0.02936648928800878
AAAASIFF	8	Unmodified	_AAAASIFF_					0	0	0		ENST00000587971.5_1_18:31684099-31802142:-|nuORF	ENST00000587971.5_1_18:31684099-31802142:-|nuORF	ENST00000587971.5_1_18:31684099-31802142:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	399.6131286621094	2	399.213246	796.41194	-0.58452	-0.00023335	0.63567	0.00025377	0.05115	2.042E-05	399.2134224911828	67.68	0.50517	67.68	67.449	67.955	0					15	9	2	0	0	0	0.77123	1	24564	24564		14.582	3.4672	1	1057900			11	13753	8	8	11	11					0.0055905677722876135
AAAASIFF	8	Unmodified	_AAAASIFF_					0	0	0		ENST00000587971.5_1_18:31684099-31802142:-|nuORF	ENST00000587971.5_1_18:31684099-31802142:-|nuORF	ENST00000587971.5_1_18:31684099-31802142:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	399.213246	796.41194	-0.16005	-6.3892E-05	0.32321	0.00012903	0.16317	6.5138E-05	399.21325068892367	66.76	0.50963	67.496	67.189	67.698	0.73631	-0.091634	-0.00014145	NaN	14.582	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	971330			12	13753	8	8							0.0055905677722876135
AAAATGRLL	9	Unmodified	_AAAATGRLL_					0	0	0		ENST00000533532.5_1_11:129939872-129979518:+|nuORF;nc|ENSG00000084234|Q06481-5|APLP2;nc|ENSG00000084234|Q06481-4|APLP2;nc|ENSG00000084234|Q06481-2|APLP2;ENSG00000084234|ENST00000338167|APLP2;nc|ENSG00000084234|Q06481|APLP2	ENST00000533532.5_1_11:129939872-129979518:+|nuORF	ENST00000533532.5_1_11:129939872-129979518:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	422.6558837890625	2	422.255977	842.497401	-0.05303	-2.2392E-05	-0.23756	-0.00010031	-0.29059	-0.00012271	422.25582247679785	36.158	0.55707	36.158	35.932	36.489	0					21	10	3	0	0	0	0.14572	1	12129	12129		62.573	11.718	1	4926400			13	1796	9	9	12	12					0.06985221962906962
AAADARNPL	9	Unmodified	_AAADARNPL_					0	0	0		ENST00000372409.7_1_20:44563346-44566100:+|nuORF	ENST00000372409.7_1_20:44563346-44566100:+|nuORF	ENST00000372409.7_1_20:44563346-44566100:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	450.1403503417969	2	449.740691	897.466829	-0.42238	-0.00018996	-0.045925	-2.0654E-05	-0.46831	-0.00021062	449.7406242282792	26.837	0.35171	26.837	26.626	26.978	0					11	6	2	0	0	0	0.012968	1	8064	8064		92.491	33.813	1	2129300			14	11199	10	10	13	13					0.013994435778499792
AAADPKVAF	9	Unmodified	_AAADPKVAF_					0	0	0		ENSG00000093000|ENST00000347635|NUP50;nc|ENSG00000093000|Q9UKX7-2|NUP50	ENSG00000093000|ENST00000347635|NUP50	ENSG00000093000|ENST00000347635|NUP50	MULTI-MSMS	A375_MHC_IP_R1	1	446.29449462890625	2	445.242535	888.470518	-0.054263	-2.416E-05	-0.21991	-9.7912E-05	-0.27417	-0.00012207	445.242467213992	42.057	1.8271	42.057	41.725	43.553	0					115	35	6	0	0	0	0.41409	1	14745	14745		24.021	3.5669	1	848960000			15	2019	11	11	14	14					0.02182113351705084
AAADPKVAF	9	Unmodified	_AAADPKVAF_					0	0	0		ENSG00000093000|ENST00000347635|NUP50;nc|ENSG00000093000|Q9UKX7-2|NUP50	ENSG00000093000|ENST00000347635|NUP50	ENSG00000093000|ENST00000347635|NUP50	MULTI-MSMS	A375_MHC_IP_R2	2	445.642333984375	2	445.242535	888.470518	-0.57921	-0.00025789	-0.01886	-8.3972E-06	-0.59807	-0.00026629	445.24255786929746	41.284	2.0851	42.058	41.692	43.777	0.77451					112	40	5	0	0	0	0.012843	3	15260	15260;15437;15732		92.653	27.418	1	692710000			16	2019	11	11	15;16;17	15					0.02182113351705084
AAAEALRL	8	Unmodified	_AAAEALRL_					0	0	0		ENSG00000197774|ENST00000568449|EME2	ENSG00000197774|ENST00000568449|EME2	ENSG00000197774|ENST00000568449|EME2	MULTI-SECPEP	A375_MHC_IP_R1	1	408.14276123046875	2	407.742702	813.470852	-0.22053	-8.9921E-05	0.21905	8.9315E-05	-0.0014875	-6.0653E-07	407.7427323036967	36.143	0.65941	36.143	35.881	36.541	0					23	12	3	0	0	0	0.4193	1	12078	12078		58.679	2.5018	1	3782200			17	9194	12	12	18	18					0.056655330715557284
AAAEALRL	8	Unmodified	_AAAEALRL_					0	0	0		ENSG00000197774|ENST00000568449|EME2	ENSG00000197774|ENST00000568449|EME2	ENSG00000197774|ENST00000568449|EME2	MULTI-MSMS	A375_MHC_IP_R2	2	408.14276123046875	2	407.742702	813.470852	-0.2239	-9.1295E-05	0.25217	0.00010282	0.028262	1.1524E-05	407.7427506145762	35.257	0.40411	36.021	35.829	36.233	0.76338					13	7	2	0	0	0	0.51581	1	12821	12821		48.346	6.2513	1	3072000			18	9194	12	12	19	19					0.056655330715557284
AAAEITRKL	9	Unmodified	_AAAEITRKL_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000462630.5_1_20:2637388-2638937:+|nuORF;ENST00000492135.5_1_20:2636822-2638937:+|nuORF;ENST00000490753.1_1_20:2637050-2637903:+|nuORF;ENST00000466447.5_1_20:2636822-2638033:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	A375_MHC_IP_R1	1	487.1952209472656	2	486.795466	971.57638	-0.26591	-0.00012944	-0.16171	-7.8719E-05	-0.42761	-0.00020816	486.79533572351755	24.977	0.40358	24.977	24.801	25.204	0					13	7	3	0	0	0	0.027818	1	7204	7204		76.825	31.125	1	15199000			19	2285	13	13	20	20					0.08945449197187827
AAAEITRKL	9	Unmodified	_AAAEITRKL_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000462630.5_1_20:2637388-2638937:+|nuORF;ENST00000492135.5_1_20:2636822-2638937:+|nuORF;ENST00000490753.1_1_20:2637050-2637903:+|nuORF;ENST00000466447.5_1_20:2636822-2638033:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	A375_MHC_IP_R2	2	487.1949768066406	2	486.795466	971.57638	-0.88691	-0.00043174	0.27441	0.00013358	-0.6125	-0.00029816	486.79548393407083	24.288	0.25396	24.932	24.755	25.009	0.64368					9	4	3	0	0	0	0.31062	1	7981	7981		29.841	15.935	1	7075400			20	2285	13	13	21	21					0.08945449197187827
AAAELERRY	9	Unmodified	_AAAELERRY_					0	0	0		nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	MULTI-MSMS	A375_MHC_IP_R1	1	360.5928039550781	3	360.192845	1077.55671	0.36793	0.00013253	-0.70128	-0.0002526	-0.33335	-0.00012007	360.19267211263093	21.393	0.55767	21.393	21.098	21.656	0					17	10	3	0	0	0	0.26169	1	5628	5628		33.445	7.4242	1	2095100			21	1121	14	14	22	22					0.02103073186435722
AAAELIKEV	9	Unmodified	_AAAELIKEV_					0	0	0		ENSG00000168807|ENST00000336278|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	MULTI-MSMS	A375_MHC_IP_R1	1	472.6764831542969	2	472.276575	942.538597	-0.37533	-0.00017726	0.031379	1.482E-05	-0.34395	-0.00016244	472.2766415787713	53.58	0.45764	53.58	53.352	53.809	0					14	8	2	0	0	0	0.23226	1	19120	19120		35.612	7.9835	1	2769000			22	7347	15	15	23	23					0.06502938211713172
AAAEPEAVW	9	Unmodified	_AAAEPEAVW_					0	0	0		ENST00000309033.4_1_2:24163342-24163486:+|nuORF	ENST00000309033.4_1_2:24163342-24163486:+|nuORF	ENST00000309033.4_1_2:24163342-24163486:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	472.6758728027344	2	472.229625	942.444697	-1.0833	-0.00051156	0.32168	0.00015191	-0.76161	-0.00035965	472.2296976376684	52.812	0.30325	53.563	53.385	53.688	0.75105					8	5	2	0	0	0	0.5339	1	19902	19902		18.135	6.4947	1	1216400			23	10607	16	16	24	24					-0.028827808905703023
AAAETLIIEE	10	Unmodified	_AAAETLIIEE_					0	0	0			REV__nc|ENSG00000111783|Q33E94-3|RFX4	REV__nc|ENSG00000111783|Q33E94-3|RFX4	MULTI-SECPEP	A375_MHC_IP_R1	1	530.6818237304688	2	530.282054	1058.54956	-0.45197	-0.00023967	-3.2556	-0.0017264	-3.7076	-0.0019661	530.2804809244366	71.219	0.51382	71.219	70.85	71.364	0					17	9	2	0	0	0	0.69172	1	25899	25899		32.305	7.3145	1	2035700	+		24	17692	17	17	25	25					0.02262295795344471
AAAFEKQVL	9	Unmodified	_AAAFEKQVL_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	489.1763916015625	2	488.776742	975.538931	-0.16216	-7.9258E-05	-0.0027921	-1.3647E-06	-0.16495	-8.0623E-05	488.7766601802857	47.693	0.50356	47.693	47.416	47.92	0					19	9	3	0	0	0	0.27114	1	16809	16809		53.404	16.898	1	4705400			25	3998	18	18	26	26					0.05018357931567152
AAAFEKQVL	9	Unmodified	_AAAFEKQVL_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MSMS	A375_MHC_IP_R2	2	489.1761474609375	2	488.776742	975.538931	-0.38705	-0.00018918	-0.048515	-2.3713E-05	-0.43557	-0.00021289	488.77674087410963	46.776	0.50783	47.538	47.309	47.817	0.76128					15	9	2	0	0	0	0.0092511	1	17538	17538		103.42	55.671	1	4595400			26	3998	18	18	27	27					0.05018357931567152
AAAFGRIAF	9	Unmodified	_AAAFGRIAF_					0	0	0		ENSG00000167699|ENST00000301329|GLOD4;nc|ENSG00000167699|Q9HC38|GLOD4;ENST00000575528.5_2_17:673461-674588:-|nuORF;ENST00000576239.5_1_17:673624-673741:-|nuORF	ENSG00000167699|ENST00000301329|GLOD4	ENSG00000167699|ENST00000301329|GLOD4	MULTI-MSMS	A375_MHC_IP_R1	1	462.6581115722656	2	462.25852	922.502486	-0.075457	-3.4881E-05	-0.1529	-7.0677E-05	-0.22835	-0.00010556	462.2583839629352	78.519	0.80974	78.519	78.15	78.96	0					34	15	4	0	0	0	0.034481	1	28604	28604		71.134	35.089	1	20644000			27	7212	19	19	28	28					0.03813525825501074
AAAFGRIAF	9	Unmodified	_AAAFGRIAF_					0	0	0		ENSG00000167699|ENST00000301329|GLOD4;nc|ENSG00000167699|Q9HC38|GLOD4;ENST00000575528.5_2_17:673461-674588:-|nuORF;ENST00000576239.5_1_17:673624-673741:-|nuORF	ENSG00000167699|ENST00000301329|GLOD4	ENSG00000167699|ENST00000301329|GLOD4	MULTI-SECPEP	A375_MHC_IP_R2	2	462.6581726074219	2	462.25852	922.502486	-0.5221	-0.00024135	0.21833	0.00010093	-0.30377	-0.00014042	462.25857026767636	77.499	0.76793	78.242	77.958	78.726	0.74293					35	14	4	0	0	0	0.14422	1	29396	29396		61.357	32.871	1	19493000			28	7212	19	19	29	29					0.03813525825501074
AAAFLTYQV	9	Unmodified	_AAAFLTYQV_					0	0	0		MGAM|p.S212F|1|0.14|ENSG00000257335|chr7:142021662-142021662|C/T|missense_variant	MGAM|p.S212F|1|0.14|ENSG00000257335|chr7:142021662-142021662|C/T|missense_variant	MGAM|p.S212F|1|0.14|ENSG00000257335|chr7:142021662-142021662|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	492.1815185546875	2	492.263468	982.512382	-0.34041	-0.00016757	-1.7094	-0.00084146	-2.0498	-0.001009	492.26346818738267	77.47	0.55711	77.47	77.133	77.69	0					22	10	3	0	0	0	0.32092	1	28141	28141		29.082	5.061	1	1344800			29	14384	20	20	30	30					0.02042669040235978
AAAGGEPGSDY	11	Unmodified	_AAAGGEPGSDY_					0	0	0			REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	MSMS	A375_MHC_IP_R2	2	497.65338134765625	2	497.709254	993.403954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.958	1	28.636	28.136	29.136	0.67857								0	0	0	0.1623	1	9613	9613		6.7232	1.4925	1		+		30	21742	21	21	31	31					-0.09301167000853638
AAAGGHWL	8	Unmodified	_AAAGGHWL_					0	0	0			REV__ENST00000334976.10_2_19:50979887-50981253:+|nuORF	REV__ENST00000334976.10_2_19:50979887-50981253:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	391.5893859863281	2	391.700838	781.387122	0.39304	0.00015395	-0.27099	-0.00010615	0.12204	4.7804E-05	391.7006547904	49.75	0.40665	49.75	49.49	49.896	0					11	7	2	0	0	0	0.972	1	17538	17538		2.8892	0	1	916770	+		31	23663	22	22	32	32					-0.012315783054759777
AAAGLRGLV	9	Unmodified	_AAAGLRGLV_					0	0	0		ENSG00000161036|ENST00000292616|LRWD1;ENST00000473880.5_1_7:102109277-102110330:+|nuORF	ENSG00000161036|ENST00000292616|LRWD1	ENSG00000161036|ENST00000292616|LRWD1	MULTI-SECPEP	A375_MHC_IP_R1	1	414.6586608886719	2	414.25852	826.502486	0.31342	0.00012984	0.25695	0.00010644	0.57036	0.00023628	414.25859271796713	53.511	1.0147	53.511	53.048	54.063	0					26	19	2	0	0	0	0.16229	1	19044	19044		57.471	7.8024	1	2316400			32	6461	23	23	33	33					0.08229525825515793
AAAGLRGLV	9	Unmodified	_AAAGLRGLV_					0	0	0		ENSG00000161036|ENST00000292616|LRWD1;ENST00000473880.5_1_7:102109277-102110330:+|nuORF	ENSG00000161036|ENST00000292616|LRWD1	ENSG00000161036|ENST00000292616|LRWD1	MULTI-MSMS	A375_MHC_IP_R2	2	414.65850830078125	2	414.25852	826.502486	-0.42221	-0.0001749	0.14901	6.173E-05	-0.2732	-0.00011317	414.25851224961673	52.532	0.60569	53.284	52.831	53.437	0.75225					19	11	2	0	0	0	0.11296	1	19830	19830		48.346	2.3249	1	2449000			33	6461	23	23	34	34					0.08229525825515793
AAAHCPFS	8	Unmodified	_AAAHCPFS_					0	0	0		ENST00000554270.5_1_14:88936247-89016761:-|nuORF;ENSG00000070778|ENST00000556564|PTPN21	ENST00000554270.5_1_14:88936247-89016761:-|nuORF	ENST00000554270.5_1_14:88936247-89016761:-|nuORF	MSMS	A375_MHC_IP_R1	1	402.13226318359375	2	402.178881	802.343209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.147	1	40.147	39.647	40.647	0								0	0	0	0.16876	1	13775	13775		10.183	3.8293	1				34	1501	24	24	35	35					-0.0658693079412842
AAAHCPFS	8	Unmodified	_AAAHCPFS_					0	0	0		ENST00000554270.5_1_14:88936247-89016761:-|nuORF;ENSG00000070778|ENST00000556564|PTPN21	ENST00000554270.5_1_14:88936247-89016761:-|nuORF	ENST00000554270.5_1_14:88936247-89016761:-|nuORF	MSMS	A375_MHC_IP_R2	2	402.1321105957031	2	402.178881	802.343209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.352	1	40.127	39.627	40.627	0.77451								0	0	0	0.16876	1	14524	14524		10.183	4.423	1				35	1501	24	24	36	36					-0.0658693079412842
AAAKIQASF	9	Unmodified	_AAAKIQASF_					0	0	0		NRGN|p.R38W|1|0.27|ENSG00000154146|chr11:124745599-124745599|C/T|missense_variant;ENSG00000154146|ENST00000284292|NRGN	NRGN|p.R38W|1|0.27|ENSG00000154146|chr11:124745599-124745599|C/T|missense_variant	NRGN|p.R38W|1|0.27|ENSG00000154146|chr11:124745599-124745599|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	454.1558837890625	2	453.75581	905.497067	-0.29519	-0.00013395	0.047752	2.1668E-05	-0.24744	-0.00011228	453.755967379914	38.52	0.56223	38.52	38.218	38.78	0					19	10	3	0	0	0	0.0028027	1	13089	13089		139.14	60.41	1	5146100			36	6065	25	25	37	37					0.040538022430382625
AAAKIQASF	9	Unmodified	_AAAKIQASF_					0	0	0		NRGN|p.R38W|1|0.27|ENSG00000154146|chr11:124745599-124745599|C/T|missense_variant;ENSG00000154146|ENST00000284292|NRGN	NRGN|p.R38W|1|0.27|ENSG00000154146|chr11:124745599-124745599|C/T|missense_variant	NRGN|p.R38W|1|0.27|ENSG00000154146|chr11:124745599-124745599|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	454.1556091308594	2	453.75581	905.497067	-0.44822	-0.00020338	-0.09474	-4.2989E-05	-0.54296	-0.00024637	453.75574177728123	37.698	0.4093	38.473	38.227	38.636	0.77451					16	7	3	0	0	0	0.01128	1	13810	13810		126.57	65.208	1	6508600			37	6065	25	25	38	38					0.040538022430382625
AAALAASPF	9	Unmodified	_AAALAASPF_					0	0	0			REV__ENST00000533424.5_1_11:67770773-67771486:-|nuORF	REV__ENST00000533424.5_1_11:67770773-67771486:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	409.627685546875	2	409.723978	817.433404	-0.028895	-1.1839E-05	0.56359	0.00023092	0.5347	0.00021908	409.7241083316008	42.142	0.30187	42.142	41.932	42.233	0					7	5	2	0	0	0	0.43707	1	14545	14545		28.487	0	1	681370	+		38	25880	26	26	39	39					0.017384418059464224
AAALKAAAF	9	Unmodified	_AAALKAAAF_					0	0	0		ENST00000452825.7_2_X:53254339-53254378:-|nuORF	ENST00000452825.7_2_X:53254339-53254378:-|nuORF	ENST00000452825.7_2_X:53254339-53254378:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	418.3004150390625	2	417.247621	832.480688	0.24941	0.00010407	-0.033609	-1.4023E-05	0.2158	9.0042E-05	417.2475413906939	43.685	0.60927	43.685	43.4	44.01	0					21	11	3	0	0	0	0.11296	1	15154	15154		48.346	19.859	1	7405800			39	12090	27	27	40	40					0.0577472107693211
AAALKAAAF	9	Unmodified	_AAALKAAAF_					0	0	0		ENST00000452825.7_2_X:53254339-53254378:-|nuORF	ENST00000452825.7_2_X:53254339-53254378:-|nuORF	ENST00000452825.7_2_X:53254339-53254378:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	417.6476135253906	2	417.247621	832.480688	0.027919	1.1649E-05	-0.19184	-8.0043E-05	-0.16392	-6.8395E-05	417.24750689930585	42.771	0.60772	43.543	43.268	43.876	0.7724					24	11	3	0	0	0	0.39388	1	15905	15905		39.957	5.8549	1	8233000			40	12090	27	27	41	41					0.0577472107693211
AAALRDLSF	9	Unmodified	_AAALRDLSF_					0	0	0		nc|ENSG00000117385|Q32P28-4|P3H1;ENSG00000117385|ENST00000296388|P3H1;nc|ENSG00000117385|Q32P28-3|P3H1;ENST00000492956.1_1_1:43227954-43232675:-|nuORF;nc|ENSG00000117385|Q32P28-2|P3H1;ENST00000495874.5_1_1:43222117-43232675:-|nuORF;ENST00000460031.5_1_1:43220834-43232642:-|nuORF	nc|ENSG00000117385|Q32P28-4|P3H1	nc|ENSG00000117385|Q32P28-4|P3H1	MULTI-SECPEP	A375_MHC_IP_R1	1	482.6663818359375	2	482.266542	962.51853	-0.21497	-0.00010367	-0.14666	-7.0728E-05	-0.36163	-0.0001744	482.26641348927575	71.22	0.86545	71.22	70.8	71.665	0					54	16	4	0	0	0	0.028087	1	25804	25804		106.94	31.179	1	88470000			41	3477	28	28	42	42					0.03577187271741877
AAALRDLSF	9	Unmodified	_AAALRDLSF_					0	0	0		nc|ENSG00000117385|Q32P28-4|P3H1;ENSG00000117385|ENST00000296388|P3H1;nc|ENSG00000117385|Q32P28-3|P3H1;ENST00000492956.1_1_1:43227954-43232675:-|nuORF;nc|ENSG00000117385|Q32P28-2|P3H1;ENST00000495874.5_1_1:43222117-43232675:-|nuORF;ENST00000460031.5_1_1:43220834-43232642:-|nuORF	nc|ENSG00000117385|Q32P28-4|P3H1	nc|ENSG00000117385|Q32P28-4|P3H1	MULTI-SECPEP	A375_MHC_IP_R2	2	482.6663513183594	2	482.266542	962.51853	-0.52676	-0.00025404	-0.24552	-0.00011841	-0.77228	-0.00037245	482.26638242061466	70.339	0.8605	71.074	70.693	71.553	0.73421					59	16	5	0	0	0	0.05217	1	26591	26591		89.401	13.64	1	104760000			42	3477	28	28	43	43					0.03577187271741877
AAALRQAL	8	Unmodified	_AAALRQAL_					0	0	0		ENSG00000178685|ENST00000313028|PARP10;ENST00000491746.5_1_15:42134104-42137535:+|nuORF;ENST00000526007.5_1_8:145051654-145057989:-|nuORF;ENSG00000243708|ENST00000458483|PLA2G4B;nc|ENSG00000243708|P0C869-8|PLA2G4B;nc|ENSG00000243708|P0C869-7|PLA2G4B;nc|ENSG00000243708|P0C869-6|PLA2G4B	ENSG00000178685|ENST00000313028|PARP10;ENSG00000243708|ENST00000458483|PLA2G4B	ENSG00000243708|ENST00000458483|PLA2G4B	MULTI-MSMS	A375_MHC_IP_R1	1	407.6505126953125	2	407.250695	812.486836	-0.35626	-0.00014509	0.35513	0.00014463	-0.0011335	-4.6162E-07	407.25077180562215	33.055	0.50572	33.055	32.785	33.291	0					21	9	3	0	0	0	0.042018	1	10730	10730		144.66	51.835	1	8167900			43	9812;8171	29	29	44	44					0.07309239308460747
AAALRQAL	8	Unmodified	_AAALRQAL_					0	0	0		ENSG00000178685|ENST00000313028|PARP10;ENST00000491746.5_1_15:42134104-42137535:+|nuORF;ENST00000526007.5_1_8:145051654-145057989:-|nuORF;ENSG00000243708|ENST00000458483|PLA2G4B;nc|ENSG00000243708|P0C869-8|PLA2G4B;nc|ENSG00000243708|P0C869-7|PLA2G4B;nc|ENSG00000243708|P0C869-6|PLA2G4B	ENSG00000178685|ENST00000313028|PARP10;ENSG00000243708|ENST00000458483|PLA2G4B	ENSG00000243708|ENST00000458483|PLA2G4B	MULTI-MSMS	A375_MHC_IP_R2	2	407.6506652832031	2	407.250695	812.486836	-0.0087164	-3.5497E-06	-0.035275	-1.4366E-05	-0.043991	-1.7915E-05	407.25056157881966	32.236	0.56191	32.973	32.755	33.317	0.73691					23	10	3	0	0	0	0.056915	1	11447	11447		129.2	43.844	1	8803700			44	9812;8171	29	29	45	45					0.07309239308460747
AAALVLKHA	9	Unmodified	_AAALVLKHA_					0	0	0			REV__ENSG00000184677|ENST00000375647|ZBTB40	REV__ENSG00000184677|ENST00000375647|ZBTB40	MULTI-SECPEP	A375_MHC_IP_R1	1	447.6822509765625	2	447.281995	892.549437	0.07836	3.5049E-05	0.076178	3.4073E-05	0.15454	6.9122E-05	447.2820801892312	53.812	0.40649	53.812	53.656	54.063	0					12	7	2	0	0	0	0.75466	1	19212	19212		7.9102	0	1	1720900	+		45	21832	30	30	46	46					0.09886385376637463
AAALVLKHA	9	Unmodified	_AAALVLKHA_					0	0	0			REV__ENSG00000184677|ENST00000375647|ZBTB40	REV__ENSG00000184677|ENST00000375647|ZBTB40	MULTI-MATCH	A375_MHC_IP_R2	2		2	447.281995	892.549437	-0.89214	-0.00039904	-0.16471	-7.3673E-05	-1.0569	-0.00047271	447.2819231554821	53.028	0.40528	53.779	53.538	53.944	0.75105	-0.016925	-5.5806E-05	NaN	7.9102	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1041200	+		46	21832	30	30							0.09886385376637463
AAANAIRVY	9	Unmodified	_AAANAIRVY_					0	0	0		ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	MULTI-SECPEP	A375_MHC_IP_R2	2	475.1662292480469	2	474.766709	947.518865	-0.88269	-0.00041907	0.44539	0.00021146	-0.4373	-0.00020762	474.76672863850825	38.25	0.6102	39.025	38.791	39.401	0.77451					30	11	4	0	0	0	0.040439	1	14037	14037		81.613	41.656	1	50810000			47	4713	31	31	47	47					0.043006069916032175
AAAPERVVL	9	Unmodified	_AAAPERVVL_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-SECPEP	A375_MHC_IP_R1	1	463.6766357421875	2	463.276909	924.539266	-0.23256	-0.00010774	0.17763	8.2292E-05	-0.05493	-2.5448E-05	463.2769356518795	43.782	0.40623	43.782	43.553	43.959	0					15	7	3	0	0	0	0.36673	1	15260	15260		45.74	16.658	1	2428600			48	1301	32	32	48	48					0.07397777651419801
AAAPERVVL	9	Unmodified	_AAAPERVVL_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	A375_MHC_IP_R2	2	463.6766662597656	2	463.276909	924.539266	-0.47671	-0.00022085	0.14335	6.6413E-05	-0.33336	-0.00015444	463.2769992261241	42.91	0.35366	43.682	43.472	43.826	0.7724					13	6	3	0	0	0	0.12748	1	15972	15972		45.74	16.658	1	2548100			49	1301	32	32	49	49					0.07397777651419801
AAAPFAAAAAA	11	Unmodified	_AAAPFAAAAAA_					0	0	0			REV__ENSG00000164916|ENST00000328914|FOXK1	REV__ENSG00000164916|ENST00000328914|FOXK1	MULTI-MSMS	A375_MHC_IP_R1	1	451.6715087890625	2	451.74016	901.465767	0.23443	0.0001059	-0.29536	-0.00013343	-0.060939	-2.7529E-05	451.7399593001823	48.569	0.35404	48.569	48.375	48.729	0					9	6	2	0	0	0	0.69619	1	17152	17152		15.847	0	1	1258400	+		50	20526	33	33	50	50					0.011092292089301736
AAAPFAAAAAA	11	Unmodified	_AAAPFAAAAAA_					0	0	0			REV__ENSG00000164916|ENST00000328914|FOXK1	REV__ENSG00000164916|ENST00000328914|FOXK1	MULTI-SECPEP	A375_MHC_IP_R1	1	451.6715087890625	2	451.74016	901.465767	0.23443	0.0001059	-0.29536	-0.00013343	-0.060939	-2.7529E-05	451.7399593001823	48.569	0.35404	48.569	48.375	48.729	0					9	6	2	0	0	0	0.90323	1	17152	17152		15.847	0	1	1258400	+		51	20526	33	33	51	51					0.011092292089301736
AAAPLGPFR	9	Unmodified	_AAAPLGPFR_					0	0	0			REV__ENST00000513061.1_1_4:172734932-172737255:+|nuORF	REV__ENST00000513061.1_1_4:172734932-172737255:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	450.1714782714844	2	450.25852	898.502486	-0.1408	-6.3398E-05	-0.30222	-0.00013608	-0.44302	-0.00019947	450.2583628846307	47.533	0.91602	48.295	47.817	48.733	0.76127					48	17	4	0	0	0	0.3243	1	17771	17771		44.407	8.3628	1	17941000	+		52	25634	34	34	52	52					0.04917525825510438
AAAPMRPPP	9	Unmodified	_AAAPMRPPP_					0	0	0			REV__ENST00000360561.7_1_10:123923281-123923482:+|nuORF	REV__ENST00000360561.7_1_10:123923281-123923482:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	454.6898193359375	2	454.244555	906.474557	-0.14699	-6.6771E-05	0.65182	0.00029609	0.50483	0.00022932	454.2448274418291	70.893	0.61365	70.893	70.494	71.108	0					14	11	2	0	0	0	0.63811	1	25684	25684		12.532	2.3482	1	600210	+		53	23893	35	35	53	53					0.017578795737790642
AAAPTPAPCE	10	Unmodified	_AAAPTPAPCE_					0	0	0			REV__ENSG00000128714|ENST00000392539|HOXD13	REV__ENSG00000128714|ENST00000392539|HOXD13	MULTI-MSMS	A375_MHC_IP_R1	1	464.6160888671875	2	464.21566	926.416767	-0.23487	-0.00010903	0.93439	0.00043376	0.69952	0.00032473	464.2160292611844	42.024	0.40429	42.024	41.88	42.285	0					12	7	2	0	0	0	0.55789	1	14565	14565		24.021	3.5669	1	2205900	+		54	18466	36	36	54	54					-0.049384271423150494
AAAPVIKAY	9	Unmodified	_AAAPVIKAY_					0	0	0		ENSG00000213995|ENST00000680254|NAXD;nc|ENSG00000213995|Q8IW45|NAXD;nc|ENSG00000213995|Q8IW45-2|NAXD	ENSG00000213995|ENST00000680254|NAXD	ENSG00000213995|ENST00000680254|NAXD	MULTI-SECPEP	A375_MHC_IP_R1	1	452.66864013671875	2	452.268553	902.522553	-0.163	-7.3721E-05	0.48838	0.00022088	0.32538	0.00014716	452.26875137503185	40.787	0.50434	40.787	40.509	41.013	0					15	9	2	0	0	0	0.39388	1	14050	14050		39.957	20.518	1	4038600			55	9595	37	37	55	55					0.06739276765472368
AAAPVIKAY	9	Unmodified	_AAAPVIKAY_					0	0	0		ENSG00000213995|ENST00000680254|NAXD;nc|ENSG00000213995|Q8IW45|NAXD;nc|ENSG00000213995|Q8IW45-2|NAXD	ENSG00000213995|ENST00000680254|NAXD	ENSG00000213995|ENST00000680254|NAXD	MULTI-SECPEP	A375_MHC_IP_R2	2	452.6686096191406	2	452.268553	902.522553	-0.30746	-0.00013905	0.041405	1.8726E-05	-0.26605	-0.00012033	452.26854936432625	39.977	0.45573	40.752	40.524	40.98	0.77451					14	8	2	0	0	0	0.3607	1	14802	14802		42.095	17.421	1	4283500			56	9595	37	37	56	56					0.06739276765472368
AAAQVQFNPPF	11	Unmodified	_AAAQVQFNPPF_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-MSMS	A375_MHC_IP_R1	1	397.5877380371094	3	397.204862	1188.59276	-0.051131	-2.031E-05	2.6359	0.001047	2.5848	0.0010267	397.20620986342016	28.617	0.45429	28.617	28.491	28.945	0					10	8	2	0	0	0	0.72585	1	8804	8804		12.856	3.0917	1	1345100	+		57	22122	38	38	57	57					0.006005303632719006
AAARLLSTW	9	Unmodified	_AAARLLSTW_					0	0	0		ENST00000566735.1_1_16:19125342-19127388:+|nuORF;ENSG00000205730|ENST00000381440|ITPRIPL2	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	495.1816101074219	2	494.782359	987.550165	-0.46016	-0.00022768	0.30393	0.00015038	-0.15622	-7.7297E-05	494.7823321558013	70.543	0.55807	71.277	70.895	71.453	0.73421					13	10	2	0	0	0	0.066859	1	26754	26754		57.722	17.765	1	2505600			58	9524	39	39	58	58					0.05589180025708629
AAASAKLAF	9	Unmodified	_AAASAKLAF_					0	0	0		ENSG00000169964|ENST00000302392|TMEM42	ENSG00000169964|ENST00000302392|TMEM42	ENSG00000169964|ENST00000302392|TMEM42	MULTI-SECPEP	A375_MHC_IP_R2	2	424.9830017089844	2	425.245078	848.475603	-0.015065	-6.4065E-06	-0.87901	-0.0003738	-0.89408	-0.0003802	425.2445552233627	44.088	0.30287	44.858	44.682	44.985	0.7691					8	5	2	0	0	0	0.56537	1	16453	16453		29.082	4.4077	1	740970			59	7457	40	40	59	59					0.04530417214323279
AAASFPRIY	9	Unmodified	_AAASFPRIY_					0	0	0		ENST00000381475.3_1:147851207-147931919:-|nuORF;ENST00000439332.1_1:144301513-144340676:-|nuORF	ENST00000381475.3_1:147851207-147931919:-|nuORF	ENST00000381475.3_1:147851207-147931919:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	498.668701171875	2	498.269084	994.523616	-0.56247	-0.00028026	0.50824	0.00025324	-0.054229	-2.702E-05	498.2692947402523	66.256	0.5571	66.256	65.972	66.529	0					25	10	3	0	0	0	0.064992	1	23993	23993		68.081	32.037	1	3569600			60	11376	41	41	60	60					0.02613491134366086
AAASFPRIY	9	Unmodified	_AAASFPRIY_					0	0	0		ENST00000381475.3_1:147851207-147931919:-|nuORF;ENST00000439332.1_1:144301513-144340676:-|nuORF	ENST00000381475.3_1:147851207-147931919:-|nuORF	ENST00000381475.3_1:147851207-147931919:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	497.62969970703125	2	498.269084	994.523616	-0.65117	-0.00032446	0.50521	0.00025173	-0.14595	-7.2724E-05	498.26921680749064	65.424	0.55747	66.162	65.867	66.425	0.73811					22	10	3	0	0	0	0.064992	1	24832	24832		58.679	35.53	1	3609800			61	11376	41	41	61	61					0.02613491134366086
AAASLIRLV	9	Unmodified	_AAASLIRLV_					0	0	0		HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant;HTT|p.S2672Rfs*25|1|0.31|ENSG00000197386|chr4:3228913-3228913|T/-|frameshift_variant;ENSG00000197386|ENST00000355072|HTT;ENST00000510626.5_1_4:3131970-3189635:+|nuORF	HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant	HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	457.695556640625	2	457.295102	912.575651	-0.086244	-3.9439E-05	0.13382	6.1194E-05	0.047573	2.1755E-05	457.2951595305145	82.513	0.45775	82.513	82.265	82.722	0					17	8	3	0	0	0	0.02114	1	30191	30191		82.529	46.402	1	2357100			62	9151	42	42	62	62					0.11586654548125352
AAASLIRLV	9	Unmodified	_AAASLIRLV_					0	0	0		HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant;HTT|p.S2672Rfs*25|1|0.31|ENSG00000197386|chr4:3228913-3228913|T/-|frameshift_variant;ENSG00000197386|ENST00000355072|HTT;ENST00000510626.5_1_4:3131970-3189635:+|nuORF	HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant	HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	457.694580078125	2	457.295102	912.575651	-0.37218	-0.0001702	0.13641	6.238E-05	-0.23577	-0.00010782	457.29509413398364	81.461	0.65597	82.204	81.877	82.533	0.74293					18	12	2	0	0	0	0.02114	1	30926	30926		82.529	42.58	1	3340600			63	9151	42	42	63	63					0.11586654548125352
AAASRDITL	9	Unmodified	_AAASRDITL_					0	0	0		ENSG00000149480|ENST00000278823|MTA2;nc|ENSG00000149480|O94776-2|MTA2;ENST00000490611.1_1_2:42886927-42909744:+|nuORF;nc|ENSG00000182979|Q13330-2|MTA1;nc|ENSG00000182979|Q13330-3|MTA1;ENSG00000182979|ENST00000331320|MTA1;ENSG00000057935|ENST00000405094|MTA3;nc|ENSG00000057935|Q9BTC8-2|MTA3	ENSG00000149480|ENST00000278823|MTA2;ENSG00000057935|ENST00000405094|MTA3	ENSG00000149480|ENST00000278823|MTA2	MULTI-SECPEP	A375_MHC_IP_R1	1	459.65606689453125	2	459.256174	916.497795	-0.33592	-0.00015427	0.088684	4.0729E-05	-0.24724	-0.00011355	459.25622984594827	36.281	0.40558	36.281	36.033	36.439	0					13	7	2	0	0	0	0.05217	1	12133	12133		70.332	14.155	1	2872200			64	5807;1289	43	43	64	64					0.03620596892096728
AAASRDITL	9	Unmodified	_AAASRDITL_					0	0	0		ENSG00000149480|ENST00000278823|MTA2;nc|ENSG00000149480|O94776-2|MTA2;ENST00000490611.1_1_2:42886927-42909744:+|nuORF;nc|ENSG00000182979|Q13330-2|MTA1;nc|ENSG00000182979|Q13330-3|MTA1;ENSG00000182979|ENST00000331320|MTA1;ENSG00000057935|ENST00000405094|MTA3;nc|ENSG00000057935|Q9BTC8-2|MTA3	ENSG00000149480|ENST00000278823|MTA2;ENSG00000057935|ENST00000405094|MTA3	ENSG00000149480|ENST00000278823|MTA2	MULTI-SECPEP	A375_MHC_IP_R2	2	458.6192626953125	2	459.256174	916.497795	-0.60849	-0.00027945	0.060436	2.7756E-05	-0.54805	-0.0002517	459.25610481760236	35.395	0.50586	36.158	35.929	36.435	0.76338					16	9	2	0	0	0	0.40377	1	12855	12855		28.495	11.382	1	3756100			65	5807;1289	43	43	65	65					0.03620596892096728
AAASVLSAAW	10	Unmodified	_AAASVLSAAW_					0	0	0		ENST00000454756.6_1_4:53588897-53617733:-|nuORF	ENST00000454756.6_1_4:53588897-53617733:-|nuORF	ENST00000454756.6_1_4:53588897-53617733:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	474.15301513671875	2	473.753267	945.491981	-0.39388	-0.0001866	-0.11768	-5.5752E-05	-0.51156	-0.00024235	473.753182675622	62.168	0.56301	62.168	61.891	62.454	0					25	10	3	0	0	0	0.16517	1	22417	22417		71.134	0	1	7632000			66	12112	44	44	66	66					0.01705498380431436
AAATGRLL	8	Unmodified	_AAATGRLL_					0	0	0		ENST00000533532.5_1_11:129939872-129979518:+|nuORF;nc|ENSG00000084234|Q06481-5|APLP2;nc|ENSG00000084234|Q06481-4|APLP2;nc|ENSG00000084234|Q06481-2|APLP2;ENSG00000084234|ENST00000338167|APLP2;nc|ENSG00000084234|Q06481|APLP2	ENST00000533532.5_1_11:129939872-129979518:+|nuORF	ENST00000533532.5_1_11:129939872-129979518:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	386.6019287109375	2	386.73742	771.460287	-0.31624	-0.0001223	0.34412	0.00013308	0.027885	1.0784E-05	386.7375013144757	33.114	1.2691	33.866	33.534	34.803	0.75225					38	24	2	0	0	0	0.1561	1	11823	11823		81.89	13.809	1	67181000			67	1796	45	45	67	67					0.06541550417136932
AAATHGCE	8	Unmodified	_AAATHGCE_					0	0	0			REV__nc|ENSG00000160460|Q9H254-4|SPTBN4	REV__nc|ENSG00000160460|Q9H254-4|SPTBN4	MULTI-SECPEP	A375_MHC_IP_R2	2	759.7608642578125	1	759.309014	758.301738	-0.71285	-0.00054127	1.2439	0.00094454	0.53109	0.00040326	759.3105950437744	111.4	0.72028	112.14	111.75	112.47	0.73692					17	13	2	0	0	0	0.96296	1	41896	41896		15.768	10.538	1	3575400	+		68	20172	46	46	68	68					-0.08708111553460185
AAATHGCE	8	Unmodified	_AAATHGCE_					0	0	0			REV__nc|ENSG00000160460|Q9H254-4|SPTBN4	REV__nc|ENSG00000160460|Q9H254-4|SPTBN4	MULTI-MATCH	A375_MHC_IP_R1	1		1	759.309014	758.301738	-0.23103	-0.00017542	0.94339	0.00071632	0.71236	0.0005409	759.3100219391298	112.08	0.55948	112.08	111.72	112.28	0	-0.029233	-0.00014779	NaN	15.768	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4521800	+		69	20172	46	46							-0.08708111553460185
AAATKRGK	8	Unmodified	_AAATKRGK_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-SECPEP	A375_MHC_IP_R2	2	803.1171875	1	802.489362	801.482085	-0.77554	-0.00062236	4.0586	0.003257	3.2831	0.0026347	802.4939571540689	109.87	0.46082	110.62	110.43	110.9	0.74684					9	8	2	0	0	0	0.92636	1	41419	41419		11.64	0	1	1980000			70	3337	47	47	69	69					0.07340355165706569
AAATLSLK	8	Unmodified	_AAATLSLK_					0	0	0			REV__ENSG00000240720|ENST00000458448|LRRD1	REV__ENSG00000240720|ENST00000458448|LRRD1	MULTI-MSMS	A375_MHC_IP_R2	2	387.6550598144531	2	387.739628	773.464704	-0.48472	-0.00018795	0.75984	0.00029462	0.27512	0.00010667	387.7399255331185	33.43	0.9155	34.182	33.584	34.5	0.75225					38	17	3	0	0	0	0.77123	1	11853	11853		14.582	0	1	13655000	+		71	22780	48	48	70	70					0.06891014840039134
AAATPRTAF	9	Unmodified	_AAATPRTAF_					0	0	0		ENST00000477043.5_1_10:5727032-5751560:+|nuORF	ENST00000477043.5_1_10:5727032-5751560:+|nuORF	ENST00000477043.5_1_10:5727032-5751560:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	453.64532470703125	2	453.245609	904.476666	-1.0768	-0.00048804	-0.01188	-5.3844E-06	-1.0886	-0.00049342	453.2456563373619	29.308	0.35542	30.007	29.88	30.236	0.69872					13	6	3	0	0	0	0.021889	1	10252	10252		81.89	33.544	1	4592200			72	12437	49	49	71	71					0.020606315832196742
AAAVDVRTW	9	Unmodified	_AAAVDVRTW_					0	0	0		ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	MULTI-SECPEP	A375_MHC_IP_R1	1	495.16387939453125	2	494.764166	987.513779	-0.35574	-0.00017601	-0.88045	-0.00043561	-1.2362	-0.00061162	494.7634402116978	52.361	1.0177	52.361	51.625	52.643	0					24	19	2	0	0	0	0.26374	1	18622	18622		55.235	28.351	1	5624800			73	5890	50	50	72	72					0.019523031289850223
AAAVGAVF	8	Unmodified	_AAAVGAVF_					0	0	0		ENST00000593233.1_1_19:5894755-5901370:-|nuORF;ENSG00000174886|ENST00000308961|NDUFA11;nc|ENSG00000174886|Q86Y39-2|NDUFA11	ENST00000593233.1_1_19:5894755-5901370:-|nuORF	ENST00000593233.1_1_19:5894755-5901370:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	705.7918701171875	1	705.393002	704.385725	-0.70258	-0.00049559	-0.064538	-4.5524E-05	-0.76712	-0.00054112	705.3928822456355	70.491	0.40456	71.225	71.048	71.453	0.73421					12	7	2	0	0	0	0.72845	1	26738	26738		41.817	17.607	1	3224000			74	7912	51	51	73	73					0.021707876057689646
AAAVGLEL	8	Unmodified	_AAAVGLEL_					0	0	0		ENSG00000174165|ENST00000310442|ZDHHC24	ENSG00000174165|ENST00000310442|ZDHHC24	ENSG00000174165|ENST00000310442|ZDHHC24	MULTI-SECPEP	A375_MHC_IP_R1	1	742.7898559570312	1	743.429781	742.422505	-0.73493	-0.00054637	0.61223	0.00045515	-0.12269	-9.1213E-05	743.4301683154541	85.756	0.55978	85.756	85.462	86.022	0					13	10	2	0	0	0	0.78043	1	31445	31445		32.117	8.9685	1	1518300			75	7860	52	52	74	74					0.04099039431662277
AAAVPRAAF	9	Unmodified	_AAAVPRAAF_					0	0	0		nc|ENSG00000089248|P30040-2|ERP29;ENST00000553161.1_1_12:112451251-112452397:+|nuORF;ENSG00000089248|ENST00000261735|ERP29	nc|ENSG00000089248|P30040-2|ERP29	nc|ENSG00000089248|P30040-2|ERP29	MULTI-MSMS	A375_MHC_IP_R1	1	437.6510314941406	2	437.250695	872.486836	-0.057147	-2.4988E-05	-0.1243	-5.4352E-05	-0.18145	-7.934E-05	437.2506235660131	42.259	1.723	42.259	41.932	43.655	0					76	33	5	0	0	0	0.1478	1	14825	14825		42.095	6.0504	1	196340000			76	1923	53	53	75	75					0.045492393084600735
AAAVPRAAF	9	Unmodified	_AAAVPRAAF_					0	0	0		nc|ENSG00000089248|P30040-2|ERP29;ENST00000553161.1_1_12:112451251-112452397:+|nuORF;ENSG00000089248|ENST00000261735|ERP29	nc|ENSG00000089248|P30040-2|ERP29	nc|ENSG00000089248|P30040-2|ERP29	MULTI-MSMS	A375_MHC_IP_R2	2	437.650634765625	2	437.250695	872.486836	-0.4347	-0.00019007	-0.024629	-1.0769E-05	-0.45933	-0.00020084	437.2506725332566	41.5	1.3754	42.274	41.946	43.321	0.77451					61	26	5	0	0	0	0.050162	1	15562	15562		64.236	34.012	1	234300000			77	1923	53	53	76	76					0.045492393084600735
AAAVPTRSY	9	Unmodified	_AAAVPTRSY_					0	0	0		ENSG00000132463|ENST00000254799|GRSF1;ENST00000505068.5_1_4:71691792-71705589:-|nuORF	ENSG00000132463|ENST00000254799|GRSF1	ENSG00000132463|ENST00000254799|GRSF1	MULTI-SECPEP	A375_MHC_IP_R2	2	468.6507263183594	2	468.250892	934.48723	-0.90612	-0.00042429	0.72928	0.00034148	-0.17684	-8.2807E-05	468.2514354780763	24.253	0.40723	24.896	24.602	25.009	0.64368					14	7	3	0	0	0	0.56537	1	7966	7966		17.113	2.2746	1	5647100			78	4409	54	54	77	77					0.017366142376545213
AAAVPTRSY	9	Unmodified	_AAAVPTRSY_					0	0	0		ENSG00000132463|ENST00000254799|GRSF1;ENST00000505068.5_1_4:71691792-71705589:-|nuORF	ENSG00000132463|ENST00000254799|GRSF1	ENSG00000132463|ENST00000254799|GRSF1	MULTI-MATCH	A375_MHC_IP_R1	1		2	468.250892	934.48723	-0.35005	-0.00016391	-0.20903	-9.7877E-05	-0.55908	-0.00026179	468.2506859164626	24.826	0.35513	24.826	24.698	25.053	0	-0.035087	-0.00029771	NaN	17.113	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5975500			79	4409	54	54							0.017366142376545213
AAAVREPL	8	Unmodified	_AAAVREPL_					0	0	0			REV__ENST00000295156.8_1_2:17721951-17722035:+|nuORF	REV__ENST00000295156.8_1_2:17721951-17722035:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	414.142333984375	2	413.742702	825.470852	-0.43929	-0.00018175	0.20287	8.3936E-05	-0.23642	-9.7819E-05	413.7427552968444	52.526	0.75747	53.278	52.882	53.639	0.75225					16	14	2	0	0	0	0.70843	1	19851	19851		32.117	7.4431	1	2167200	+		80	23378	55	55	78	78					0.05113533071573784
AAAVVRLA	8	Unmodified	_AAAVVRLA_					0	0	0			REV__LCE5A|p.Q5Rfs*65|1|0.2|ENSG00000186207|chr1:152511548-152511548|A/-|frameshift_variant	REV__LCE5A|p.Q5Rfs*65|1|0.2|ENSG00000186207|chr1:152511548-152511548|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	385.6366271972656	2	385.747788	769.481023	0.040664	1.5686E-05	0.036355	1.4024E-05	0.07702	2.971E-05	385.747804284508	47.438	0.4078	48.2	47.919	48.326	0.76128					11	7	2	0	0	0	0.94479	1	17754	17754		19.439	0	1	1631800	+		81	26921	56	56	79	79					0.08706140796812178
AAAYLQHL	8	Unmodified	_AAAYLQHL_					0	0	0		ENSG00000144283|ENST00000389759|PKP4;nc|ENSG00000144283|Q99569-2|PKP4;ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1	ENSG00000144283|ENST00000389759|PKP4;ENSG00000198561|ENST00000399050|CTNND1	ENSG00000198561|ENST00000399050|CTNND1	MULTI-MSMS	A375_MHC_IP_R1	1	444.28228759765625	2	443.742702	885.470852	0.35446	0.00015729	-0.51709	-0.00022946	-0.16263	-7.2166E-05	443.7424306701001	48.603	0.85941	48.603	48.375	49.235	0					32	16	3	0	0	0	0.32803	1	17141	17141		56.541	8.1954	1	14428000			82	9283;5476	57	57	80	80					0.023535330715503733
AAAYLQHL	8	Unmodified	_AAAYLQHL_					0	0	0		ENSG00000144283|ENST00000389759|PKP4;nc|ENSG00000144283|Q99569-2|PKP4;ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1	ENSG00000144283|ENST00000389759|PKP4;ENSG00000198561|ENST00000399050|CTNND1	ENSG00000198561|ENST00000399050|CTNND1	MULTI-MSMS	A375_MHC_IP_R2	2	444.28167724609375	2	443.742702	885.470852	-0.23502	-0.00010429	-0.23423	-0.00010394	-0.46924	-0.00020822	443.74257608146945	47.745	0.95972	48.506	48.174	49.134	0.76128					34	18	3	0	0	0	0.5503	1	17967	17967		46.921	20.58	1	13065000			83	9283;5476	57	57	81	81					0.023535330715503733
AACESGSF	8	Unmodified	_AACESGSF_					0	0	0		ENST00000428373.5_2_3:35681366-35681435:+|nuORF	ENST00000428373.5_2_3:35681366-35681435:+|nuORF	ENST00000428373.5_2_3:35681366-35681435:+|nuORF	MSMS	A375_MHC_IP_R1	1	386.1478576660156	2	386.152529	770.290504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.469	1	48.469	47.969	48.969	0								0	0	0	0.16876	1	17101	17101		6.3541	0	1				84	11834	58	58	82	82					-0.1038293364757692
AACIAPTGFG	10	Unmodified	_AACIAPTGFG_					0	0	0			REV__ENSG00000008197|ENST00000008391|TFAP2D	REV__ENSG00000008197|ENST00000008391|TFAP2D	MSMS	A375_MHC_IP_R2	2	454.1681213378906	2	454.220746	906.426938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.745	1	94.489	93.989	94.989	0.74474								0	0	0	0.14925	1	35635	35635		19.257	2.3147	1		+		85	16167	59	59	83	83					-0.030018194170679635
AADETLRLW	9	Unmodified	_AADETLRLW_					0	0	0		ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	MULTI-SECPEP	A375_MHC_IP_R1	1	538.1820678710938	2	537.782556	1073.55056	-0.89029	-0.00047878	0.2143	0.00011524	-0.67599	-0.00036354	537.7824811004298	86.016	0.55746	86.016	85.717	86.274	0					23	10	3	0	0	0	0.0575	1	31528	31528		76.825	57.568	1	3208500			86	3480	60	60	84	84					0.016725549548937124
AADETLRLW	9	Unmodified	_AADETLRLW_					0	0	0		ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	MULTI-SECPEP	A375_MHC_IP_R2	2	538.1820068359375	2	537.782556	1073.55056	-0.72238	-0.00038848	0.0097047	5.219E-06	-0.71267	-0.00038326	537.7825321551076	85.219	0.56158	85.955	85.677	86.239	0.73602					21	10	3	0	0	0	0.10362	1	32387	32387		72.968	72.968	1	3299300			87	3480	60	60	85	85					0.016725549548937124
AADGPRVF	8	Unmodified	_AADGPRVF_					0	0	0		ENSG00000179115|ENST00000314606|FARSA;nc|ENSG00000179115|Q9Y285-2|FARSA;ENST00000592662.5_1_19:13039347-13044510:-|nuORF	ENSG00000179115|ENST00000314606|FARSA	ENSG00000179115|ENST00000314606|FARSA	MULTI-SECPEP	A375_MHC_IP_R1	1	416.43060302734375	2	416.719227	831.423902	0.55898	0.00023294	-0.031016	-1.2925E-05	0.52796	0.00022001	416.71914108754544	39.043	0.35575	39.043	38.882	39.238	0					9	6	2	0	0	0	0.9187	1	13275	13275		13.906	7.1829	1	834420			88	8205	61	61	86	86					0.0014467352042402126
AADGSVKLW	9	Unmodified	_AADGSVKLW_					0	0	0		ENSG00000136875|ENST00000374198|PRPF4;nc|ENSG00000136875|O43172|PRPF4	ENSG00000136875|ENST00000374198|PRPF4	ENSG00000136875|ENST00000374198|PRPF4	MULTI-SECPEP	A375_MHC_IP_R2	2	474.152587890625	2	473.753267	945.491981	-0.87516	-0.00041461	-0.0030382	-1.4394E-06	-0.87819	-0.00041605	473.75322147898066	61.426	0.80485	62.171	61.769	62.573	0.74503					36	15	3	0	0	0	0.074405	1	23226	23226		79.596	8.4627	1	4545300			89	4835	62	62	87	87					0.01705498380431436
AADLKYIE	8	Unmodified	_AADLKYIE_					0	0	0		nc|ENSG00000109814|O60701-3|UGDH;ENSG00000109814|ENST00000316423|UGDH	nc|ENSG00000109814|O60701-3|UGDH	nc|ENSG00000109814|O60701-3|UGDH	MSMS	A375_MHC_IP_R2	2	461.6611633300781	2	461.74765	921.480748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.268	1	41.043	40.543	41.543	0.77451								0	0	0	0.16876	1	14904	14904		9.3474	0	1				90	2895	63	63	88	88					0.016866762862719042
AADPKVAF	8	Unmodified	_AADPKVAF_					0	0	0		ENSG00000093000|ENST00000347635|NUP50;nc|ENSG00000093000|Q9UKX7-2|NUP50	ENSG00000093000|ENST00000347635|NUP50	ENSG00000093000|ENST00000347635|NUP50	MULTI-SECPEP	A375_MHC_IP_R1	1	410.1241455078125	2	409.723978	817.433404	-0.23609	-9.673E-05	0.45382	0.00018594	0.21773	8.921E-05	409.7240892652864	39.871	0.45689	39.871	39.643	40.1	0					19	8	3	0	0	0	0.68831	1	13670	13670		49.933	13.889	1	4890600			91	2019	64	64	89	89					0.017384418059464224
AADPKVAF	8	Unmodified	_AADPKVAF_					0	0	0		ENSG00000093000|ENST00000347635|NUP50;nc|ENSG00000093000|Q9UKX7-2|NUP50	ENSG00000093000|ENST00000347635|NUP50	ENSG00000093000|ENST00000347635|NUP50	MULTI-SECPEP	A375_MHC_IP_R2	2	410.1240539550781	2	409.723978	817.433404	-0.18191	-7.4532E-05	0.029824	1.222E-05	-0.15208	-6.2312E-05	409.7238908409952	39.014	0.51048	39.788	39.556	40.067	0.77451					20	9	3	0	0	0	0.5161	1	14391	14391		62.573	34.086	1	4423000			92	2019	64	64	90	90					0.017384418059464224
AADPNAAWAAY	11	Unmodified	_AADPNAAWAAY_					0	0	0		nc|ENSG00000088247|Q92945|KHSRP;ENSG00000088247|ENST00000600480|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	MULTI-MSMS	A375_MHC_IP_R1	1	561.2159423828125	2	560.756538	1119.49852	-0.52038	-0.00029181	1.0556	0.00059191	0.53518	0.00030011	560.757202275077	76.096	0.50487	76.096	75.815	76.319	0					13	9	2	0	0	0	0.73189	1	27793	27793		7.1017	0.37856	1	830700			93	1886	65	65	91	91					-0.05644608458874245
AADSAVRLW	9	Unmodified	_AADSAVRLW_					0	0	0		ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;ENST00000540135.5_1_18:33709896-33719635:+|nuORF;ENST00000535488.5_1_18:33709896-33718439:+|nuORF	ENSG00000134759|ENST00000358232|ELP2	ENSG00000134759|ENST00000358232|ELP2	MULTI-SECPEP	A375_MHC_IP_R1	1	495.1641540527344	2	494.764166	987.513779	-0.74922	-0.00037069	-0.19154	-9.4769E-05	-0.94076	-0.00046545	494.764208300389	68.226	0.75896	68.226	67.704	68.463	0					30	14	4	0	0	0	0.028087	1	24710	24710		106.94	66.99	1	3180900			94	4605	66	66	92	92					0.019523031289850223
AADSAVRLW	9	Unmodified	_AADSAVRLW_					0	0	0		ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;ENST00000540135.5_1_18:33709896-33719635:+|nuORF;ENST00000535488.5_1_18:33709896-33718439:+|nuORF	ENSG00000134759|ENST00000358232|ELP2	ENSG00000134759|ENST00000358232|ELP2	MULTI-SECPEP	A375_MHC_IP_R2	2	495.1637878417969	2	494.764166	987.513779	-0.48635	-0.00024063	-0.35914	-0.00017769	-0.84549	-0.00041832	494.7638778521066	67.367	0.71092	68.103	67.597	68.308	0.73631					27	13	4	0	0	0	0.028087	1	25499	25499		106.94	63.082	1	3481700			95	4605	66	66	93	93					0.019523031289850223
AADSGQPGT	9	Unmodified	_AADSGQPGT_					0	0	0		nc|ENSG00000105278|Q9UPR6-3|ZFR2;ENSG00000105278|ENST00000262961|ZFR2	nc|ENSG00000105278|Q9UPR6-3|ZFR2	nc|ENSG00000105278|Q9UPR6-3|ZFR2	MSMS	A375_MHC_IP_R1	1	402.1553039550781	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.227	1	63.227	62.727	63.727	0								0	0	0	0.15486	1	22848	22848		7.2892	0.93513	1				96	2583	67	67	94	94					-0.06336803855458584
AAECTHGA	8	Unmodified	_AAECTHGA_					0	0	0			REV__ENSG00000168769|ENST00000380013|TET2	REV__ENSG00000168769|ENST00000380013|TET2	MULTI-MSMS	A375_MHC_IP_R2	2	759.0698852539062	1	759.309014	758.301738	-0.71285	-0.00054127	1.2439	0.00094454	0.53109	0.00040326	759.3105950437744	111.4	0.72028	112.14	111.75	112.47	0.73692					17	13	2	0	0	0	0.77781	1	41868	41868		2.8892	0.31174	1	3575400	+		97	20884	68	68	95	95					-0.08708111553460185
AAEDDDDDN	9	Unmodified	_AAEDDDDDN_					0	0	0		ENST00000415681.1_1_6:55804812-55805085:-|nuORF	ENST00000415681.1_1_6:55804812-55805085:-|nuORF	ENST00000415681.1_1_6:55804812-55805085:-|nuORF	MSMS	A375_MHC_IP_R2	2	490.19378662109375	2	490.15979	978.305028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.457	1	83.2	82.7	83.7	0.74293								0	0	0	0.15486	1	31322	31322		2.3027	0.24298	1				98	11680	69	69	96	96					-0.18499234756416172
AAEDVFSV	8	Unmodified	_AAEDVFSV_					0	0	0		ENST00000264042.7_1_2:242422896-242429387:+|nuORF	ENST00000264042.7_1_2:242422896-242429387:+|nuORF	ENST00000264042.7_1_2:242422896-242429387:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	837.5883178710938	1	837.398875	836.391599	-0.55032	-0.00046084	0.15682	0.00013132	-0.39351	-0.00032952	837.399226075606	84.649	0.46211	84.649	84.442	84.904	0					14	8	2	0	0	0	0.7338	1	30935	30935		24.674	0	1	2050500			99	10329	70	70	97	97					-0.03314158673219936
AAEDVFSV	8	Unmodified	_AAEDVFSV_					0	0	0		ENST00000264042.7_1_2:242422896-242429387:+|nuORF	ENST00000264042.7_1_2:242422896-242429387:+|nuORF	ENST00000264042.7_1_2:242422896-242429387:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	837.398875	836.391599	-0.6751	-0.00056533	-0.27086	-0.00022681	-0.94596	-0.00079215	837.3984060387847	83.833	0.61443	84.573	84.305	84.92	0.73962	-0.038209	-0.00021229	NaN	24.674	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2160400			100	10329	70	70							-0.03314158673219936
AAEDVVATGAD	11	Unmodified	_AAEDVVATGAD_					0	0	0		nc|ENSG00000101856|O00264-2|PGRMC1;ENSG00000101856|ENST00000217971|PGRMC1	nc|ENSG00000101856|O00264-2|PGRMC1	nc|ENSG00000101856|O00264-2|PGRMC1	MSMS	A375_MHC_IP_R1	1	509.6896057128906	2	509.738011	1017.46147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.626	1	35.626	35.126	36.126	0								0	0	0	0.1534	1	11863	11863		18.373	4.467	1				101	2329	71	71	98	98					-0.04656324795280398
AAEERPLVF	9	Unmodified	_AAEERPLVF_					0	0	0		ENSG00000159055|ENST00000290130|MIS18A	ENSG00000159055|ENST00000290130|MIS18A	ENSG00000159055|ENST00000290130|MIS18A	MULTI-SECPEP	A375_MHC_IP_R1	1	516.6792602539062	2	516.279649	1030.54475	-0.78746	-0.00040655	0.42354	0.00021866	-0.36392	-0.00018789	516.2797788919852	39.702	0.65842	39.702	39.391	40.05	0					23	12	3	0	0	0	0.50702	1	13624	13624		25.399	0	1	8028400			102	6344	72	72	99	99					0.030694564432451443
AAELARSVL	9	Unmodified	_AAELARSVL_					0	0	0			REV__nc|ENSG00000099849|Q02833-3|RASSF7	REV__nc|ENSG00000099849|Q02833-3|RASSF7	MULTI-SECPEP	A375_MHC_IP_R2	2	465.6741027832031	2	465.274367	928.53418	-0.93454	-0.00043482	0.24001	0.00011167	-0.69452	-0.00032314	465.27448312012046	60.718	0.30384	61.463	61.314	61.618	0.74503					9	5	2	0	0	0	0.56537	1	23042	23042		17.113	0	1	1403300	+		103	17028	73	73	100	100					0.06705473788815652
AAELARSVL	9	Unmodified	_AAELARSVL_					0	0	0			REV__nc|ENSG00000099849|Q02833-3|RASSF7	REV__nc|ENSG00000099849|Q02833-3|RASSF7	MULTI-MATCH	A375_MHC_IP_R1	1		2	465.274367	928.53418	-0.22508	-0.00010472	-0.72556	-0.00033758	-0.95064	-0.00044231	465.27393018910874	61.656	0.45924	61.656	61.432	61.891	0	0.096388	-0.0007351	NaN	17.113	13	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1345500	+		104	17028	73	73							0.06705473788815652
AAELPRNEAD	10	Unmodified	_AAELPRNEAD_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	A375_MHC_IP_R2	2	362.9123840332031	3	362.512244	1084.5149	-0.074606	-2.7046E-05	0.55633	0.00020168	0.48173	0.00017463	362.51248236598735	27.293	0.45872	27.971	27.741	28.2	0.67857					19	8	3	0	0	0	0.67512	1	9333	9333		9.7643	0.22028	1	13443000			105	2160	74	74	101	101					-0.0239752729276006
AAEPRKKKWTL	11	Unmodified	_AAEPRKKKWTL_					0	0	0		ENSG00000127418|ENST00000510644|FGFRL1	ENSG00000127418|ENST00000510644|FGFRL1	ENSG00000127418|ENST00000510644|FGFRL1	MSMS	A375_MHC_IP_R1	1	443.33251953125	3	443.266345	1326.7772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.7	1	137.7	137.2	138.2	0								0	0	0	0.16334	1	52994	52994		0.45452	0	1				106	4089	75	75	102	102					0.12688718513823005
AAESHRLVLLS	11	Unmodified	_AAESHRLVLLS_					0	0	0			REV__FAM83C|p.P36L|1|0.21|ENSG00000125998|chr20:35292198-35292198|G/A|missense_variant	REV__FAM83C|p.P36L|1|0.21|ENSG00000125998|chr20:35292198-35292198|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	399.6310119628906	3	399.2313	1194.67207	-0.088514	-3.5338E-05	-0.095621	-3.8175E-05	-0.18414	-7.3513E-05	399.23124829875934	31.473	0.2554	32.192	32.077	32.332	0.71857					8	4	2	0	0	0	0.73472	1	11172	11172		4.4062	0.28952	1	2098200	+		107	26614	76	76	103	103					0.08252177317444875
AAESHRLVLLS	11	Unmodified	_AAESHRLVLLS_					0	0	0			REV__FAM83C|p.P36L|1|0.21|ENSG00000125998|chr20:35292198-35292198|G/A|missense_variant	REV__FAM83C|p.P36L|1|0.21|ENSG00000125998|chr20:35292198-35292198|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	399.2313	1194.67207	-0.088514	-3.5338E-05	-0.095621	-3.8175E-05	-0.18414	-7.3513E-05	399.23124829875934	31.473	0.2554	32.192	32.077	32.332	0.71857	-0.19322	-0.00014383	NaN	4.4062	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2098200	+		108	26614	76	76							0.08252177317444875
AAFDGGFTV	9	Unmodified	_AAFDGGFTV_					0	0	0		ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2;ENST00000564259.1_1_16:48382051-48395504:+|nuORF	ENSG00000102910|ENST00000285737|LONP2	ENSG00000102910|ENST00000285737|LONP2	MULTI-MSMS	A375_MHC_IP_R1	1	884.8145141601562	1	884.414859	883.407583	-0.38429	-0.00033987	0.093542	8.273E-05	-0.29075	-0.00025715	884.4149245304853	94.907	0.71254	94.907	94.599	95.312	0					31	13	3	0	0	0	0.005759	1	34836	34836		133.7	85.953	1	19742000			109	2402	77	77	104	104					-0.03878452436322277
AAFDGGFTV	9	Unmodified	_AAFDGGFTV_					0	0	0		ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2;ENST00000564259.1_1_16:48382051-48395504:+|nuORF	ENSG00000102910|ENST00000285737|LONP2	ENSG00000102910|ENST00000285737|LONP2	MULTI-MSMS	A375_MHC_IP_R2	2	883.9647216796875	1	884.414859	883.407583	-0.30369	-0.00026859	0.20691	0.00018299	-0.096785	-8.5598E-05	884.4150065621837	94.204	0.75867	94.949	94.616	95.375	0.74474					32	14	3	0	0	0	0.0022313	1	35750	35750		141.83	94.078	1	20303000			110	2402	77	77	105	105					-0.03878452436322277
AAFDGHAREL	10	Unmodified	_AAFDGHAREL_					0	0	0		ENST00000566735.1_1_16:19125342-19127388:+|nuORF;ENSG00000205730|ENST00000381440|ITPRIPL2	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	363.2486877441406	3	362.849079	1085.52541	-0.15723	-5.7049E-05	-0.22294	-8.0894E-05	-0.38017	-0.00013794	362.8489739545709	29.074	0.4076	29.074	28.895	29.302	0					22	7	5	0	0	0	0.37302	1	9048	9048		35.08	12.305	1	16042000			111	9524	78	78	106	106					-0.013934998476770488
AAFDGHAREL	10	Unmodified	_AAFDGHAREL_					0	0	0		ENST00000566735.1_1_16:19125342-19127388:+|nuORF;ENSG00000205730|ENST00000381440|ITPRIPL2	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	363.248779296875	3	362.849079	1085.52541	-0.48788	-0.00017703	-0.14262	-5.175E-05	-0.6305	-0.00022878	362.84896240254864	28.359	0.4567	29.037	28.757	29.214	0.67857					20	8	4	0	0	0	0.17675	1	9771	9771		48.073	27.202	1	16610000			112	9524	78	78	107	107					-0.013934998476770488
AAFDNFKEV	9	Unmodified	_AAFDNFKEV_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;FMNL3|p.F788Lfs*19|1|0.06|ENSG00000161791|chr12:49649280-49649281|-/TTCTGCTTTT|frameshift_variant;ENST00000587856.1_1_17:43311355-43318139:+|nuORF;ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1	nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000184922|ENST00000331495|FMNL1	ENSG00000184922|ENST00000331495|FMNL1	MULTI-MSMS	A375_MHC_IP_R1	1	520.664306640625	2	520.756007	1039.49746	-0.49822	-0.00025945	0.11943	6.2192E-05	-0.37879	-0.00019726	521.2575634603761	60.182	0.30579	60.182	59.955	60.261	0					8	5	2	0	0	0	0.70411	1	21638	21638		6.6304	0.89852	1	696350			113	8619;6485	79	79	108	108					-0.020708228277499074
AAFDQWREW	9	Unmodified	_AAFDQWREW_					0	0	0		nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	MULTI-MSMS	A375_MHC_IP_R2	2	604.7542724609375	2	604.777805	1207.54106	-0.35261	-0.00021325	0.034125	2.0638E-05	-0.31849	-0.00019262	604.777497365353	91.957	0.45525	92.696	92.329	92.785	0.73902					11	8	2	0	0	0	0.3489	1	34979	34979		27.223	15.583	1	1038700			114	2017	80	80	109	109					-0.05441213330618666
AAFGQLHKV	9	Unmodified	_AAFGQLHKV_					0	0	0		nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-2|ILF3	nc|ENSG00000129351|Q12906-2|ILF3	MULTI-SECPEP	A375_MHC_IP_R2	2	486.1766357421875	2	485.777077	969.5396	-1.1103	-0.00053937	-0.64681	-0.00031421	-1.7571	-0.00085358	485.77674761843866	28.55	0.25326	29.245	29.026	29.279	0.69466					6	4	2	0	0	0	0.67483	1	9871	9871		20.454	8.8133	1	7265500			115	14595	81	81	110	110					0.053611973712691
AAFGQLHKV	9	Unmodified	_AAFGQLHKV_					0	0	0		nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-2|ILF3	nc|ENSG00000129351|Q12906-2|ILF3	MULTI-MATCH	A375_MHC_IP_R1	1		2	485.777077	969.5396	-0.72956	-0.0003544	-0.23102	-0.00011222	-0.96057	-0.00046662	485.7769267139836	29.293	0.20342	29.293	29.149	29.353	0	0.024	0.00010347	NaN	25.399	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2623300			116	14595	81	81							0.053611973712691
AAFKQPAQ	8	Unmodified	_AAFKQPAQ_					0	0	0			REV__nc|ENSG00000160193|P57081-3|WDR4	REV__nc|ENSG00000160193|P57081-3|WDR4	MULTI-SECPEP	A375_MHC_IP_R2	2	430.1372985839844	2	430.734877	859.455202	-0.47927	-0.00020644	0.64353	0.00027719	0.16426	7.0753E-05	430.7348738245881	41.087	0.35562	41.861	41.743	42.098	0.77451					10	6	2	0	0	0	0.95423	1	15266	15266		12.532	12.532	1	640880	+		117	20150	82	82	111	111					0.019852465545113773
AAFLKAIGY	9	Unmodified	_AAFLKAIGY_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	A375_MHC_IP_R1	1	477.676513671875	2	477.276378	952.538203	-0.65787	-0.00031398	-0.91181	-0.00043519	-1.5697	-0.00074917	477.2764729631045	80.526	0.71011	80.526	80.289	80.999	0					30	13	3	0	0	0	0.034481	1	29374	29374		71.134	40.909	1	13924000			118	3317	83	83	112	112					0.060035632825247376
AAFQLQMLQI	10	Unmodified	_AAFQLQMLQI_					0	0	0		ENST00000479501.5_1_20:61950534-61961007:+|nuORF;ENSG00000101203|ENST00000358894|COL20A1;nc|ENSG00000101203|Q9P218-2|COL20A1;nc|ENSG00000101203|Q9P218-3|COL20A1	ENST00000479501.5_1_20:61950534-61961007:+|nuORF;ENSG00000101203|ENST00000358894|COL20A1	ENST00000479501.5_1_20:61950534-61961007:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	388.9486389160156	3	388.214482	1161.62162	-0.26534	-0.00010301	-2.0069	-0.00077912	-2.2723	-0.00088213	388.5487909726713	50.685	0.60587	51.439	51.159	51.765	0.75406					37	11	4	0	0	0	0.63639	1	19045	19045		11.518	1.2026	1	13217000			119	12476;2271	84	84	113	113					0.0472693166807403
AAFREAVVQ	9	Unmodified	_AAFREAVVQ_					0	0	0			REV__ENSG00000167549|ENST00000388767|CORO6	REV__ENSG00000167549|ENST00000388767|CORO6	MULTI-MSMS	A375_MHC_IP_R1	1	495.6741638183594	2	495.771991	989.529429	-0.26749	-0.00013261	1.2009	0.00059537	0.9334	0.00046275	495.7729297671076	62.587	1.1264	62.587	62.148	63.274	0					43	21	4	0	0	0	0.46465	1	22729	22729		21.537	1.0834	1	11966000	+		120	20771	85	85	114	114					0.034245896460333825
AAFRFPRQW	9	Unmodified	_AAFRFPRQW_					0	0	0		chr14:106482637-106488768|213|33.03|0.49|6.06|+|1|LINC00221,LINC00221|1	chr14:106482637-106488768|213|33.03|0.49|6.06|+|1|LINC00221,LINC00221|1	chr14:106482637-106488768|213|33.03|0.49|6.06|+|1|LINC00221,LINC00221|1	MULTI-SECPEP	A375_MHC_IP_R1	1	393.9457092285156	3	393.545442	1177.6145	-0.19175	-7.5464E-05	0.77596	0.00030537	0.5842	0.00022991	393.54574355054143	66.876	0.40753	66.876	66.632	67.04	0					12	7	2	0	0	0	0.76827	1	24274	24274		7.1017	2.0542	1	1418100			121	431	86	86	115	115					0.032793799025057524
AAFRFPRQW	9	Unmodified	_AAFRFPRQW_					0	0	0		chr14:106482637-106488768|213|33.03|0.49|6.06|+|1|LINC00221,LINC00221|1	chr14:106482637-106488768|213|33.03|0.49|6.06|+|1|LINC00221,LINC00221|1	chr14:106482637-106488768|213|33.03|0.49|6.06|+|1|LINC00221,LINC00221|1	MULTI-SECPEP	A375_MHC_IP_R2	2	394.3359680175781	3	393.545442	1177.6145	-0.37853	-0.00014897	0.24697	9.7194E-05	-0.13156	-5.1775E-05	393.87967371391466	65.971	0.3582	66.71	66.475	66.833	0.73812					13	6	3	0	0	0	0.65246	1	25041	25041		15.248	9.0566	1	1023200			122	431	86	86	116	116					0.032793799025057524
AAFSLNILTW	10	Unmodified	_AAFSLNILTW_					0	0	0			REV__ENST00000534701.1_1_11:71149825-71152361:-|nuORF	REV__ENST00000534701.1_1_11:71149825-71152361:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	379.6094055175781	3	379.209725	1134.60735	-0.11422	-4.3312E-05	0.11175	4.2378E-05	-0.0024637	-9.3425E-07	379.2094373489984	54.601	0.71052	55.351	54.916	55.626	0.75075					16	13	2	0	0	0	0.72006	1	20620	20620		3.3196	0.58445	1	3553900	+		123	21178	87	87	117	117					0.04542602511401128
AAFYCEKENLF	11	Unmodified	_AAFYCEKENLF_					0	0	0		nc|ENSG00000160282|O95954-2|FTCD;nc|ENSG00000160282|O95954-3|FTCD;ENSG00000160282|ENST00000397746|FTCD	nc|ENSG00000160282|O95954-2|FTCD	nc|ENSG00000160282|O95954-2|FTCD	MSMS	A375_MHC_IP_R1	1	445.6421203613281	3	445.541034	1333.60127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.105	1	43.105	42.605	43.605	0								0	0	0	0.16332	1	14969	14969		1.4551	0.24029	1				124	14710	88	88	118	118					-0.052182837823920636
AAGALFRAG	9	Unmodified	_AAGALFRAG_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-MSMS	A375_MHC_IP_R1	1	417.29132080078125	2	417.235045	832.455536	0.23108	9.6415E-05	-0.32713	-0.00013649	-0.096051	-4.0076E-05	417.2351999544126	33.976	0.40562	33.976	33.798	34.203	0					11	7	2	0	0	0	0.6898	1	11072	11072		7.9102	2.6795	1	2194000			125	4421	89	89	119	119					0.032606662743773995
AAGALFRAG	9	Unmodified	_AAGALFRAG_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-MATCH	A375_MHC_IP_R2	2		2	417.235045	832.455536	-0.23967	-9.9999E-05	-0.1336	-5.5742E-05	-0.37327	-0.00015574	417.23499557156157	33.164	0.4593	33.916	33.635	34.095	0.75225	-0.029775	7.2802E-05	NaN	7.9102	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1659000			126	4421	89	89							0.032606662743773995
AAGEISLVEPP	11	Unmodified	_AAGEISLVEPP_					0	0	0			REV__ENSG00000178502|ENST00000319121|KLHL11	REV__ENSG00000178502|ENST00000319121|KLHL11	MULTI-SECPEP	A375_MHC_IP_R1	1	361.9294738769531	3	361.529123	1081.56554	0.30141	0.00010897	0.5549	0.00020061	0.85631	0.00030958	361.529377279056	20.674	0.76425	20.674	20.334	21.098	0					37	14	3	0	0	0	0.79632	1	5286	5286		14.218	4.835	1	3702200	+		127	21507	90	90	120	120					0.02802002032240125
AAGGPREWTGK	11	Unmodified	_AAGGPREWTGK_					0	0	0			REV__ENST00000474352.5_1_1:151338696-151341653:-|nuORF	REV__ENST00000474352.5_1_1:151338696-151341653:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	377.59649658203125	3	377.196478	1128.56761	0.26043	9.8232E-05	-0.011964	-4.5129E-06	0.24846	9.3719E-05	377.19643832343877	19.746	0.50879	19.746	19.42	19.928	0					20	9	3	0	0	0	0.96429	1	4958	4958		16.275	2.7559	1	4703300	+		128	19356	91	91	121	121					0.008464755607292318
AAGHVLVK	8	Unmodified	_AAGHVLVK_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-SECPEP	A375_MHC_IP_R1	1	398.1478576660156	2	397.747788	793.481023	0.26984	0.00010733	-0.1206	-4.797E-05	0.14923	5.9357E-05	397.7476795991348	45.219	0.40401	45.219	45.03	45.434	0					12	7	2	0	0	0	0.8824	1	15843	15843		30.225	16.717	1	1639900			129	8501	92	92	122	122					0.07602140796791446
AAGHVLVK	8	Unmodified	_AAGHVLVK_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-MATCH	A375_MHC_IP_R2	2		2	397.747788	793.481023	0.014378	5.7188E-06	0.16131	6.4159E-05	0.17568	6.9878E-05	397.74778065883174	44.216	0.30359	44.985	44.782	45.086	0.76909	-0.11655	0.00011101	NaN	23.148	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1080300			130	8501	92	92							0.07602140796791446
AAGKQAKI	8	Unmodified	_AAGKQAKI_					0	0	0			REV__ENST00000521603.5_1_8:91031140-91049169:+|nuORF	REV__ENST00000521603.5_1_8:91031140-91049169:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	393.27294921875	2	393.745245	785.475937	-0.28481	-0.00011214	0.0073744	2.9036E-06	-0.27744	-0.00010924	393.74525534366137	44.99	0.45836	45.759	45.543	46.001	0.7691					13	8	2	0	0	0	0.85124	1	16830	16830		19.439	0	1	2477800	+		131	17316	93	93	123	123					0.07461836934169241
AAGLAQKK	8	Unmodified	_AAGLAQKK_					0	0	0		ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C;PIP5K1C|p.L302Rfs*82|1|0.27|ENSG00000186111|chr19:3653306-3653306|A/-|frameshift_variant	ENST00000587482.1_1_19:3649915-3700388:-|nuORF	ENST00000587482.1_1_19:3649915-3700388:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	393.2819519042969	2	393.745245	785.475937	0.13969	5.5E-05	0.067587	2.6612E-05	0.20727	8.1613E-05	393.745187213939	46.057	0.40628	46.057	45.839	46.245	0					12	7	2	0	0	0	0.54285	1	16118	16118		46.921	6.9635	1	2218700			132	8719	94	94	124	124					0.0746183693418061
AAGLARLL	8	Unmodified	_AAGLARLL_					0	0	0		ENST00000529957.5_1_16:1401966-1402161:+|nuORF;ENSG00000090581|ENST00000204679|GNPTG	ENST00000529957.5_1_16:1401966-1402161:+|nuORF	ENST00000529957.5_1_16:1401966-1402161:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	393.15557861328125	2	392.755613	783.496673	-0.090668	-3.561E-05	0.059922	2.3535E-05	-0.030746	-1.2076E-05	392.7555177438446	69.246	0.60876	69.98	69.575	70.183	0.73468					15	11	2	0	0	0	0.91495	1	26285	26285		12.532	0	1	900110			133	1957	95	95	125	125					0.09626427313855856
AAGLRTVCF	9	Unmodified	_AAGLRTVCF_					0	0	0		ENST00000292363.9_1_19:651790-663233:-|nuORF	ENST00000292363.9_1_19:651790-663233:-|nuORF	ENST00000292363.9_1_19:651790-663233:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	469.6497802734375	2	469.249837	936.485122	-0.37244	-0.00017477	-0.27835	-0.00013062	-0.65079	-0.00030538	469.2497637637102	64.308	0.96481	64.308	64.04	65.005	0					30	18	2	0	0	0	0.26169	1	23312	23312		33.445	15.299	1	2456200			134	10477	96	96	126	126					0.014338622282139113
AAGLRTVCF	9	Unmodified	_AAGLRTVCF_					0	0	0		ENST00000292363.9_1_19:651790-663233:-|nuORF	ENST00000292363.9_1_19:651790-663233:-|nuORF	ENST00000292363.9_1_19:651790-663233:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	469.6498107910156	2	469.249837	936.485122	-0.55539	-0.00026062	-0.27954	-0.00013117	-0.83494	-0.00039179	469.2497210529234	63.484	0.9641	64.224	63.835	64.8	0.74022					30	18	2	0	0	0	0.36834	1	24009	24009		26.268	7.0112	1	2606200			135	10477	96	96	127	127					0.014338622282139113
AAGLRTVCF	9	Carbamidomethyl (C)	_AAGLRTVC(Carbamidomethyl (C))F_	AAGLRTVC(1)F		AAGLRTVC(62)F		0	1	0		ENST00000292363.9_1_19:651790-663233:-|nuORF	ENST00000292363.9_1_19:651790-663233:-|nuORF	ENST00000292363.9_1_19:651790-663233:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	498.1604309082031	2	497.760569	993.506586	-0.63954	-0.00031834	0.5792	0.0002883	-0.060343	-3.0036E-05	497.761090775428	55.878	1.0175	56.628	56.033	57.051	0.75014					33	19	3	0	0	0	0.16595	1	21082	21082		61.602	19.762	1	6109100			136	10477	96	97	128	128	54				0.009572472569288948
AAGMLLLH	8	Unmodified	_AAGMLLLH_					0	0	0			REV__ENST00000607016.1_1_6:34247766-34247973:-|nuORF	REV__ENST00000607016.1_1_6:34247766-34247973:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	412.59967041015625	2	413.236199	824.457844	0.13974	5.7744E-05	1.2796	0.00052878	1.4194	0.00058653	413.2365147747899	36.262	0.25429	36.262	36.184	36.439	0					5	4	2	0	0	0	0.972	1	12109	12109		0.79363	0.10326	1	567060	+		137	26544	97	98	129	129					0.03859378687820936
AAGMLLVVD	9	Unmodified	_AAGMLLVVD_					0	0	0			REV__ENSG00000182938|ENST00000328801|OTOP3	REV__ENSG00000182938|ENST00000328801|OTOP3	MSMS	A375_MHC_IP_R1	1	444.66912841796875	2	444.746596	887.478639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.719	1	42.719	42.219	43.219	0								0	0	0	0.15486	1	14816	14816		8.5933	0	1		+		138	21719	98	99	130	130					0.03039924276822603
AAGPERIR	8	Unmodified	_AAGPERIR_					0	0	0			REV__ENST00000260585.11_1_2:26569030-26569147:+|nuORF	REV__ENST00000260585.11_1_2:26569030-26569147:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	435.651123046875	2	435.251226	868.487899	-0.16108	-7.0109E-05	0.021941	9.55E-06	-0.13914	-6.0559E-05	435.2511357797836	99.557	2.8896	99.557	98.352	101.24	0					89	56	2	0	0	0	0.7779	1	36791	36791		2.5775	0	1	5199800	+		139	23176	99	100	131	131					0.04839453677379879
AAGPIRVVL	9	Unmodified	_AAGPIRVVL_					0	0	0		ENSG00000196968|ENST00000372841|FUT11;nc|ENSG00000196968|Q495W5-2|FUT11;FUT11|p.V15Cfs*13|1|0.8|ENSG00000196968|chr10:73772373-73772373|G/-|frameshift_variant	ENSG00000196968|ENST00000372841|FUT11	ENSG00000196968|ENST00000372841|FUT11	MULTI-SECPEP	A375_MHC_IP_R2	2	447.66363525390625	2	448.28982	894.565087	-0.2173	-9.7415E-05	0.52225	0.00023412	0.30495	0.0001367	448.29007812554147	68.526	0.35362	69.261	69.121	69.474	0.73511					10	6	2	0	0	0	0.71341	1	25994	25994		18.146	6.5061	1	833620			140	9096	100	101	132	132					0.1135867189370856
AAGQAGSAVAF	11	Unmodified	_AAGQAGSAVAF_					0	0	0		ENST00000582375.1_1_18:9136379-9136607:-|nuORF	ENST00000582375.1_1_18:9136379-9136607:-|nuORF	ENST00000582375.1_1_18:9136379-9136607:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	475.1662292480469	2	475.240524	948.466495	-0.77503	-0.00036832	0.58432	0.00027769	-0.19071	-9.0633E-05	475.24102319954875	38.021	0.46294	38.795	38.534	38.997	0.77451					12	8	2	0	0	0	0.72119	1	14037	14037		13.906	0.39817	1	1138400			141	13690	101	102	133	133					-0.009799761420140385
AAGQAGSAVAF	11	Unmodified	_AAGQAGSAVAF_					0	0	0		ENST00000582375.1_1_18:9136379-9136607:-|nuORF	ENST00000582375.1_1_18:9136379-9136607:-|nuORF	ENST00000582375.1_1_18:9136379-9136607:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	475.240524	948.466495	-0.16463	-7.8241E-05	0.20824	9.8964E-05	0.043606	2.0723E-05	475.2405910061414	38.842	0.203	38.842	38.679	38.882	0	0.023465	-0.00013562	NaN	13.906	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1848600			142	13690	101	102							-0.009799761420140385
AAGRLVVP	8	Unmodified	_AAGRLVVP_					0	0	0			REV__ENST00000570123.5_1_16:85833238-85834834:+|nuORF	REV__ENST00000570123.5_1_16:85833238-85834834:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	391.620361328125	2	391.747788	781.481023	-0.22443	-8.792E-05	0.3277	0.00012837	0.10326	4.0454E-05	391.747936780134	39.864	0.35536	40.639	40.422	40.777	0.77451					9	6	2	0	0	0	0.92636	1	14690	14690		11.64	0	1	900630	+		143	26276	102	103	134	134					0.08154140796796128
AAHRLQIEAW	10	Unmodified	_AAHRLQIEAW_					0	0	0		ENSG00000197410|ENST00000357232|DCHS2;nc|ENSG00000197410|Q6V1P9-5|DCHS2	ENSG00000197410|ENST00000357232|DCHS2	ENSG00000197410|ENST00000357232|DCHS2	MSMS	A375_MHC_IP_R1	1	398.9403381347656	3	398.884123	1193.63054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.661	1	51.661	51.161	52.161	0								0	0	0	0.15423	1	18344	18344		7.1017	4.6669	1				144	9153	103	104	135	135					0.0414704134875592
AAHRSPGA	8	Unmodified	_AAHRSPGA_					0	0	0		ENST00000366919.6_1_6:161412761-161412857:+|nuORF	ENST00000366919.6_1_6:161412761-161412857:+|nuORF	ENST00000366919.6_1_6:161412761-161412857:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	765.8474731445312	1	766.395461	765.388185	-0.74461	-0.00057067	0.74092	0.00056784	-0.0036909	-2.8287E-06	766.395923084029	133.53	0.25478	133.53	133.41	133.66	0					8	4	2	0	0	0	0.972	1	51536	51536		0.6015	0	1	6143800			145	11069	104	105	136	136					-0.003893639365742274
AAHRSPGA	8	Unmodified	_AAHRSPGA_					0	0	0		ENST00000366919.6_1_6:161412761-161412857:+|nuORF	ENST00000366919.6_1_6:161412761-161412857:+|nuORF	ENST00000366919.6_1_6:161412761-161412857:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	766.395461	765.388185	-0.84575	-0.00064818	0.83847	0.0006426	-0.0072829	-5.5816E-06	766.3960972991673	133.35	0.30333	133.52	133.35	133.65	0.16487	-0.0080053	6.0576E-05	NaN	0.6015	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4318700			146	11069	104	105							-0.003893639365742274
AAIEGSRFY	9	Unmodified	_AAIEGSRFY_					0	0	0		ENSG00000182197|ENST00000378204|EXT1	ENSG00000182197|ENST00000378204|EXT1	ENSG00000182197|ENST00000378204|EXT1	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9803466796875	2	507.256174	1012.49779	-0.80374	-0.0004077	-0.39107	-0.00019837	-1.1948	-0.00060607	507.25581453371626	45.294	0.45568	46.059	45.796	46.252	0.76518					11	8	2	0	0	0	0.75164	1	16954	16954		5.7319	1.4026	1	1106400			147	8387	105	106	137	137					-0.007954031079179913
AAIIAYTFAAK	11	Unmodified	_AAIIAYTFAAK_					0	0	0			REV__WNT7A|p.E103K|1|0.27|ENSG00000154764|chr3:13854795-13854795|C/T|missense_variant	REV__WNT7A|p.E103K|1|0.27|ENSG00000154764|chr3:13854795-13854795|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	569.6747436523438	2	570.326599	1138.63865	-0.11222	-6.4E-05	0.33182	0.00018924	0.2196	0.00012524	570.3269529668671	45.691	0.3558	45.691	45.534	45.89	0					10	6	2	0	0	0	0.98994	1	15990	15990		17.443	5.8023	1	1402700	+		148	28999	106	107	138	138					0.07487175545520586
AAIKIIRQL	9	Unmodified	_AAIKIIRQL_					0	0	0		ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	MULTI-SECPEP	A375_MHC_IP_R2	2	513.615966796875	2	513.345126	1024.6757	-1.0273	-0.00052736	0.64458	0.00033089	-0.38272	-0.00019647	513.3453120033809	49.768	0.40827	50.522	50.294	50.702	0.75406					10	7	2	0	0	0	0.53748	1	18657	18657		18.146	8.7632	1	1736700			149	7118	107	108	139	139					0.16434891881931435
AAIKIIRQL	9	Unmodified	_AAIKIIRQL_					0	0	0		ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	MULTI-MATCH	A375_MHC_IP_R1	1		2	513.345126	1024.6757	-0.47744	-0.00024509	0.24025	0.00012333	-0.23719	-0.00012176	513.3451679540211	50.746	0.35305	50.746	50.613	50.966	0	0.11158	-0.00020774	NaN	18.146	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1833300			150	7118	107	108							0.16434891881931435
AAIRDIEGKLP	11	Unmodified	_AAIRDIEGKLP_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MSMS	A375_MHC_IP_R2	2	591.9063110351562	2	591.845687	1181.67682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117	1	117.66	117.16	118.16	0.65962								0	0	0	0.16138	1	44252	44252		11.495	1.3441	1				151	3184	108	109	140	140					0.0932506146018568
AAIRDNYF	8	Unmodified	_AAIRDNYF_					0	0	0		ENSG00000144118|ENST00000272519|RALB;ENSG00000006451|ENST00000005257|RALA;nc|ENSG00000144118|P11234-3|RALB;nc|ENSG00000144118|P11234-2|RALB	ENSG00000144118|ENST00000272519|RALB	ENSG00000144118|ENST00000272519|RALB	MULTI-MSMS	A375_MHC_IP_R1	1	485.6431579589844	2	485.243067	968.47158	0.2155	0.00010457	-0.35466	-0.0001721	-0.13916	-6.7527E-05	485.24291275625086	48.959	0.75883	48.959	48.526	49.285	0					20	14	2	0	0	0	0.25593	1	17302	17302		62.573	22.124	1	2366500			152	913	109	110	141	141					-0.013916722793965164
AAIRDNYF	8	Unmodified	_AAIRDNYF_					0	0	0		ENSG00000144118|ENST00000272519|RALB;ENSG00000006451|ENST00000005257|RALA;nc|ENSG00000144118|P11234-3|RALB;nc|ENSG00000144118|P11234-2|RALB	ENSG00000144118|ENST00000272519|RALB	ENSG00000144118|ENST00000272519|RALB	MULTI-MSMS	A375_MHC_IP_R2	2	485.6566467285156	2	485.243067	968.47158	-0.50751	-0.00024626	-0.045734	-2.2192E-05	-0.55324	-0.00026846	485.2429757422694	48.114	0.55186	48.875	48.582	49.134	0.76127					17	10	2	0	0	0	0.27045	2	18093	18008;18093		61.357	21.408	1	3666000			153	913	109	110	142;143	143					-0.013916722793965164
AAISHGRVF	9	Unmodified	_AAISHGRVF_					0	0	0		ENSG00000158042|ENST00000288937|MRPL17	ENSG00000158042|ENST00000288937|MRPL17	ENSG00000158042|ENST00000288937|MRPL17	MULTI-MSMS	A375_MHC_IP_R1	1	479.66650390625	2	479.266876	956.519199	-0.58255	-0.00027919	0.14832	7.1083E-05	-0.43423	-0.00020811	479.26687764308593	27.659	0.70647	27.659	27.432	28.138	0					24	13	3	0	0	0	0.0099819	1	8424	8424		122.18	78.321	1	19501000			154	6282	110	111	144	144					0.03920026711477931
AAISHGRVF	9	Unmodified	_AAISHGRVF_					0	0	0		ENSG00000158042|ENST00000288937|MRPL17	ENSG00000158042|ENST00000288937|MRPL17	ENSG00000158042|ENST00000288937|MRPL17	MULTI-MSMS	A375_MHC_IP_R2	2	479.6666564941406	2	479.266876	956.519199	-0.69624	-0.00033369	0.27953	0.00013397	-0.41672	-0.00019972	479.2669053573917	26.966	0.51269	27.626	27.414	27.927	0.65992					20	9	3	0	0	0	0.0099819	1	9162	9162		122.18	78.321	1	14599000			155	6282	110	111	145	145					0.03920026711477931
AAITIRSL	8	Unmodified	_AAITIRSL_					0	0	0		ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-SECPEP	A375_MHC_IP_R1	1	422.9925537109375	2	422.766178	843.517802	0.014219	6.0113E-06	0.084245	3.5616E-05	0.098464	4.1627E-05	422.7661582664813	57.159	0.71296	57.159	56.905	57.618	0					16	13	2	0	0	0	0.79439	1	20579	20579		29.841	3.5724	1	1421900			156	6792	111	112	146	146					0.08978392622714182
AAIVKICMWI	10	Unmodified	_AAIVKICMWI_					0	0	0			REV__nc|ENSG00000148175|P27105-2|STOM	REV__nc|ENSG00000148175|P27105-2|STOM	MULTI-MSMS	A375_MHC_IP_R2	2	383.24053955078125	3	383.217058	1146.62934	0.031656	1.2131E-05	0.69253	0.00026539	0.72418	0.00027752	383.217206220886	44.123	0.65787	44.892	44.48	45.138	0.7691					28	12	3	0	0	0	0.45919	2	16341	16341;16496		20.581	7.8141	1	4071600	+		157	27281	112	113	147;148	147					0.061893676639783735
AAIVKICMWI	10	Unmodified	_AAIVKICMWI_					0	0	0			REV__nc|ENSG00000148175|P27105-2|STOM	REV__nc|ENSG00000148175|P27105-2|STOM	MULTI-SECPEP	A375_MHC_IP_R2	2	383.612060546875	3	383.217058	1146.62934	0.031656	1.2131E-05	0.69253	0.00026539	0.72418	0.00027752	383.217206220886	44.123	0.65787	44.892	44.48	45.138	0.7691					28	12	3	0	0	0	0.72086	1	16415	16415		15.739	6.1946	1	4071600	+		158	27281	112	113	149	149					0.061893676639783735
AAKAMGVS	8	Unmodified	_AAKAMGVS_					0	0	0			REV__PHKA1|p.E210K|1|0.26|ENSG00000067177|chrX:72667464-72667464|C/T|missense_variant	REV__PHKA1|p.E210K|1|0.26|ENSG00000067177|chrX:72667464-72667464|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	367.5960388183594	2	367.696906	733.37926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.72	1	110.47	109.97	110.97	0.74684								0	0	0	0.16876	1	41401	41401		0.69038	0	1		+		159	16354	113	114	150	150					0.00190526382743883
AAKARAGH	8	Unmodified	_AAKARAGH_					0	0	0			REV__ENST00000494263.5_1_2:219646839-219678911:+|nuORF	REV__ENST00000494263.5_1_2:219646839-219678911:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	391.6250915527344	2	391.225011	780.435469	0.13467	5.2686E-05	0.28346	0.0001109	0.41813	0.00016358	391.22501289305285	94.688	4.2641	94.688	91.35	95.614	0					120	83	2	0	0	0	0.77797	1	34651	34651		2.3027	2.3027	1	4325300	+		160	18899	114	115	151	151					0.03646915334422829
AAKKQAAL	8	Unmodified	_AAKKQAAL_					0	0	0			REV__ENST00000518658.1_1_5:173036244-173036454:-|nuORF	REV__ENST00000518658.1_1_5:173036244-173036454:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	401.1528625488281	2	400.75307	799.491587	-0.27094	-0.00010858	0.13276	5.3204E-05	-0.13818	-5.5378E-05	400.7530061594684	55.438	0.61279	55.438	55.228	55.841	0					15	11	2	0	0	0	0.64599	1	19837	19837		42.968	8.8656	1	2581500	+		161	19504	115	116	152	152					0.0838212345121292
AAKLGPIDVAR	11	Unmodified	_AAKLGPIDVAR_					0	0	0			REV__nc|ENSG00000041982|P24821-4|TNC	REV__nc|ENSG00000041982|P24821-4|TNC	MULTI-SECPEP	A375_MHC_IP_R1	1	556.23486328125	2	555.835123	1109.65569	-0.91056	-0.00050612	0.63498	0.00035294	-0.27558	-0.00015318	555.8353068293726	142.73	0.80826	142.73	142.44	143.24	0					31	15	3	0	0	0	1.0004	1	54766	54766		1.1933	0	1	3019200	+		162	16345	116	117	153	153					0.10525096151309299
AAKNNVLY	8	Unmodified	_AAKNNVLY_					0	0	0			REV__SLC30A8|p.D12N|1|0.33|ENSG00000164756|chr8:117135361-117135361|G/A|missense_variant	REV__SLC30A8|p.D12N|1|0.33|ENSG00000164756|chr8:117135361-117135361|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	447.1479797363281	2	446.747985	891.481417	-0.14491	-6.4737E-05	-0.19798	-8.8445E-05	-0.34288	-0.00015318	446.74789990774025	58.819	0.61145	58.819	58.531	59.143	0					24	11	3	0	0	0	0.85124	1	21120	21120		34.187	17.245	1	5157700	+		163	27990	117	118	154	154					0.03133515726005953
AAKVLEKRLV	10	Unmodified	_AAKVLEKRLV_					0	0	0			REV__TRPM5|p.G91E|1|0.07|ENSG00000070985|chr11:2422167-2422167|C/T|missense_variant	REV__TRPM5|p.G91E|1|0.07|ENSG00000070985|chr11:2422167-2422167|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	376.9413146972656	3	376.248403	1125.72338	0.33351	0.00012548	0.16823	6.3298E-05	0.50175	0.00018878	376.24843990012556	34.077	0.40554	34.077	33.848	34.253	0					10	7	2	0	0	0	0.94163	1	11159	11159		3.5871	1.9948	1	1084300	+		164	28914	118	119	155	155					0.16554546082124943
AAKVLEKRLV	10	Unmodified	_AAKVLEKRLV_					0	0	0			REV__TRPM5|p.G91E|1|0.07|ENSG00000070985|chr11:2422167-2422167|C/T|missense_variant	REV__TRPM5|p.G91E|1|0.07|ENSG00000070985|chr11:2422167-2422167|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	376.248403	1125.72338	0.14596	5.4918E-05	-0.72574	-0.00027306	-0.57978	-0.00021814	376.5825468067755	32.991	0.35726	33.728	33.518	33.876	0.73691	-0.17419	-0.00055375	NaN	3.5871	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	692820	+		165	28914	118	119							0.16554546082124943
AALAAARL	8	Unmodified	_AALAAARL_					0	0	0			REV__ENST00000315367.3_1_8:96146046-96166295:+|nuORF	REV__ENST00000315367.3_1_8:96146046-96166295:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	378.96942138671875	2	378.739963	755.465373	0.46031	0.00017434	-0.26128	-9.8959E-05	0.19902	7.5378E-05	378.73980294678876	42.445	0.50594	42.445	42.183	42.689	0					15	9	2	0	0	0	0.15515	1	14677	14677		98.807	0	1	4738000	+		166	23532	119	120	156	156					0.07785854279734394
AALASRLA	8	Unmodified	_AALASRLA_					0	0	0		ENSG00000189114|ENST00000433642|BLOC1S3	ENSG00000189114|ENST00000433642|BLOC1S3	ENSG00000189114|ENST00000433642|BLOC1S3	MULTI-MSMS	A375_MHC_IP_R1	1	387.6549072265625	2	386.73742	771.460287	0.24025	9.2913E-05	-0.060091	-2.3239E-05	0.18016	6.9673E-05	386.7373892156323	34.016	1.213	34.016	33.648	34.861	0					88	23	5	0	0	0	0.70783	1	11164	11164		32.305	0	1	144050000			167	8961	120	121	157	157					0.06541550417125563
AALCVKNYLA	10	Unmodified	_AALCVKNYLA_					0	0	0			REV__ENST00000483128.1_1_19:51214585-51217198:-|nuORF	REV__ENST00000483128.1_1_19:51214585-51217198:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	356.5867614746094	3	355.86356	1064.56885	0.29119	0.00010362	-0.40531	-0.00014424	-0.11412	-4.0612E-05	355.8634047117035	22.884	0.9601	22.884	22.216	23.176	0					31	18	2	0	0	0	0.93615	1	6315	6315		3.8763	3.8763	1	1303300	+		168	25289	121	122	158	158					0.03914973605265004
AALGGALW	8	Unmodified	_AALGGALW_					0	0	0		ENSG00000240857|ENST00000381249|RDH14	ENSG00000240857|ENST00000381249|RDH14	ENSG00000240857|ENST00000381249|RDH14	MULTI-MSMS	A375_MHC_IP_R1	1	379.6094970703125	2	379.713414	757.412274	0.38978	0.000148	-0.78537	-0.00029822	-0.3956	-0.00015021	379.71291367774074	57.213	0.91584	57.213	56.804	57.72	0					21	17	2	0	0	0	0.77686	1	20496	20496		6.3541	0	1	1845900			169	9778	122	123	159	159					0.023864764970767283
AALGGALW	8	Unmodified	_AALGGALW_					0	0	0		ENSG00000240857|ENST00000381249|RDH14	ENSG00000240857|ENST00000381249|RDH14	ENSG00000240857|ENST00000381249|RDH14	MULTI-MSMS	A375_MHC_IP_R2	2	379.60919189453125	2	379.713414	757.412274	-0.24678	-9.3705E-05	-0.65732	-0.00024959	-0.9041	-0.0003433	379.713023694745	56.374	0.56185	57.124	56.693	57.255	0.75014					18	10	3	0	0	0	0.77781	1	21261	21261		2.8892	0	1	3020400			170	9778	122	123	160	160					0.023864764970767283
AALHDPLWRT	10	Unmodified	_AALHDPLWRT_					0	0	0			REV__ENST00000491251.1_1_22:30418516-30421787:+|nuORF	REV__ENST00000491251.1_1_22:30418516-30421787:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	393.6087646484375	3	393.88049	1178.61964	0.19364	7.6271E-05	-0.097935	-3.8575E-05	0.095705	3.7696E-05	393.8803505309581	51.585	0.814	51.585	51.168	51.982	0					39	15	4	0	0	0	0.68889	1	18371	18371		14.218	2.0434	1	8910200	+		171	17075	123	124	161	161					0.03747638974436995
AALIWAHERP	10	Unmodified	_AALIWAHERP_					0	0	0			REV__ENSG00000187808|ENST00000343905|SOWAHD	REV__ENSG00000187808|ENST00000343905|SOWAHD	MULTI-MSMS	A375_MHC_IP_R1	1	388.94866943359375	3	388.548852	1162.62473	0.35554	0.00013815	-0.29027	-0.00011278	0.065277	2.5363E-05	388.54862945189643	51.562	0.81456	51.562	51.27	52.085	0					36	12	4	0	0	0	0.57505	1	18285	18285		14.957	14.957	1	10284000	+		172	22051	124	125	162	162					0.04991942837068564
AALLIGIHG	9	Unmodified	_AALLIGIHG_					0	0	0		ENSG00000140284|ENST00000267842|SLC27A2	ENSG00000140284|ENST00000267842|SLC27A2	ENSG00000140284|ENST00000267842|SLC27A2	MULTI-SECPEP	A375_MHC_IP_R1	1	433.16876220703125	2	432.76872	863.522887	-0.17619	-7.6249E-05	-0.046059	-1.9933E-05	-0.22225	-9.6182E-05	432.76869948938116	60.683	0.4068	60.683	60.414	60.821	0					12	7	2	0	0	0	0.4045	1	21834	21834		36.466	10.125	1	1986900			173	5136	125	126	163	163					0.08566696485320335
AALLIGIHG	9	Unmodified	_AALLIGIHG_					0	0	0		ENSG00000140284|ENST00000267842|SLC27A2	ENSG00000140284|ENST00000267842|SLC27A2	ENSG00000140284|ENST00000267842|SLC27A2	MULTI-MATCH	A375_MHC_IP_R2	2		2	432.76872	863.522887	-0.62269	-0.00026948	0.24499	0.00010602	-0.3777	-0.00016345	432.76866270784905	59.627	0.50556	60.375	60.098	60.603	0.74714	-0.15409	8.9969E-05	NaN	36.466	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2330100			174	5136	125	126							0.08566696485320335
AALLPLAGL	9	Unmodified	_AALLPLAGL_					0	0	0		ENSG00000147324|ENST00000276282|MFHAS1	ENSG00000147324|ENST00000276282|MFHAS1	ENSG00000147324|ENST00000276282|MFHAS1	MULTI-SECPEP	A375_MHC_IP_R1	1	420.1736755371094	2	419.773471	837.53239	0.48165	0.00020218	0.01649	6.9222E-06	0.49814	0.00020911	419.7733883065897	112.82	0.60493	112.82	112.59	113.19	0					28	11	3	0	0	0	0.14801	1	41329	41329		56.048	0	1	9418600			175	5677	126	127	164	164					0.10712464770847419
AALLPVRL	8	Unmodified	_AALLPVRL_					0	0	0		ENST00000292591.11_1_5:179228908-179233794:-|nuORF	ENST00000292591.11_1_5:179228908-179233794:-|nuORF	ENST00000292591.11_1_5:179228908-179233794:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	427.1867980957031	2	426.786913	851.559273	-0.33477	-0.00014287	0.083426	3.5605E-05	-0.25134	-0.00010727	426.78697678796476	86.096	0.35329	86.096	85.87	86.224	0					9	6	2	0	0	0	0.78043	1	31601	31601		24.674	3.8027	1	2081900			176	10478	127	128	165	165					0.12755573382037255
AALLPVRL	8	Unmodified	_AALLPVRL_					0	0	0		ENST00000292591.11_1_5:179228908-179233794:-|nuORF	ENST00000292591.11_1_5:179228908-179233794:-|nuORF	ENST00000292591.11_1_5:179228908-179233794:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	427.1869201660156	2	426.786913	851.559273	-0.048302	-2.0615E-05	-0.10742	-4.5847E-05	-0.15572	-6.6461E-05	426.7867184119155	84.999	0.41017	85.735	85.523	85.933	0.73602					12	7	2	0	0	0	0.64068	1	32357	32357		49.669	15.482	1	991140			177	10478	127	128	166	166					0.12755573382037255
AALPDEKVTQ	10	Unmodified	_AALPDEKVTQ_					0	0	0			REV__ENSG00000157613|ENST00000621158|CREB3L1	REV__ENSG00000157613|ENST00000621158|CREB3L1	MULTI-MSMS	A375_MHC_IP_R1	1	358.2611999511719	3	357.860873	1070.56079	0.17818	6.3762E-05	0.28372	0.00010153	0.46189	0.00016529	357.8611963984004	35.244	0.305	35.244	35.064	35.369	0					9	5	2	0	0	0	0.53147	1	11747	11747		25.997	1.1158	1	2345300	+		178	20036	128	129	167	167					0.028331178894632103
AALPDEKVTQ	10	Unmodified	_AALPDEKVTQ_					0	0	0			REV__ENSG00000157613|ENST00000621158|CREB3L1	REV__ENSG00000157613|ENST00000621158|CREB3L1	MULTI-SECPEP	A375_MHC_IP_R2	2	358.2610778808594	3	357.860873	1070.56079	-0.41899	-0.00014994	1.5859	0.00056754	1.1669	0.0004176	357.86162168643716	34.529	0.60926	35.281	35.057	35.666	0.75225					17	11	3	0	0	0	0.42334	1	12479	12479		31.636	0	1	2837100	+		179	20036	128	129	168	168					0.028331178894632103
AALPNVYEV	9	Unmodified	_AALPNVYEV_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	A375_MHC_IP_R1	1	976.357421875	1	975.514573	974.507297	0.078612	7.6687E-05	0.053097	5.1796E-05	0.13171	0.00012848	975.514583557175	89.8	0.65704	89.8	89.476	90.133	0					27	12	3	0	0	0	0.015701	1	33023	33023		88.954	50.98	1	10863000			180	2155	129	130	169	169					0.01902365177613774
AALPNVYEV	9	Unmodified	_AALPNVYEV_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	A375_MHC_IP_R2	2	488.6605224609375	2	488.260925	974.507297	-0.49643	-0.00024239	-0.20232	-9.8787E-05	-0.69876	-0.00034118	488.2608954767253	89.08	0.552	89.812	89.533	90.085	0.7318					16	10	2	0	0	0	0.12592	1	33914	33914		46.021	2.1627	1	1553200			181	2155	129	130	170	170					0.01902365177613774
AALPNVYEV	9	Unmodified	_AALPNVYEV_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MATCH	A375_MHC_IP_R1	1		2	488.260925	974.507297	-0.3399	-0.00016596	0.29731	0.00014516	-0.042589	-2.0795E-05	488.2609500032994	89.805	0.50518	89.805	89.577	90.083	0	-0.0034088	0.00034322	NaN	46.021	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1016000			182	2155	129	130							0.01902365177613774
AALPNVYEV	9	Unmodified	_AALPNVYEV_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MATCH	A375_MHC_IP_R2	2		1	975.514573	974.507297	0.048543	4.7355E-05	-0.40471	-0.0003948	-0.35617	-0.00034745	975.5141687806699	89.08	0.552	89.812	89.533	90.085	0.7318	0.0056771	-0.00026566	NaN	88.954	26	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10966000			183	2155	129	130							0.01902365177613774
AALQWRAGRF	10	Unmodified	_AALQWRAGRF_					0	0	0			REV__ENST00000454486.4_1_15:32828531-32828903:-|nuORF	REV__ENST00000454486.4_1_15:32828531-32828903:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	392.6313781738281	3	392.552597	1174.63596	-0.49105	-0.00019276	3.639	0.0014285	3.1479	0.0012357	392.88772946173543	19.561	0.50564	20.171	20.044	20.549	0.61029					12	9	2	0	0	0	0.92832	1	6162	6162		8.4443	0	1	739800	+		184	24919	130	131	171	171					0.0556276493121004
AALRALVDQRW	11	Unmodified	_AALRALVDQRW_					0	0	0		NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	433.9822082519531	3	433.582444	1297.7255	-0.56912	-0.00024676	0.26277	0.00011393	-0.30635	-0.00013283	433.5825105053851	67.929	0.4034	67.929	67.704	68.108	0					12	7	2	0	0	0	0.45484	1	24646	24646		34.674	17.625	1	3319000			185	4441	131	132	172	172					0.0885497481992843
AALRALVDQRW	11	Unmodified	_AALRALVDQRW_					0	0	0		NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	434.31646728515625	3	433.582444	1297.7255	-0.30018	-0.00013015	-0.16505	-7.1564E-05	-0.46523	-0.00020172	433.5824094946057	67.033	0.45573	67.77	67.546	68.001	0.73631					14	8	2	0	0	0	0.98336	1	25449	25449		14.838	10.432	1	2492400			186	4441	131	132	173	173					0.0885497481992843
AALRLQYL	8	Unmodified	_AALRLQYL_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	A375_MHC_IP_R1	1	474.6867370605469	2	474.287277	946.560001	-0.52477	-0.00024889	-0.31853	-0.00015107	-0.8433	-0.00039996	474.28731093741277	76.048	0.65697	76.048	75.764	76.421	0					29	12	3	0	0	0	0.03885	1	27697	27697		120.86	16.546	1	10449000			187	5564	132	133	174	174					0.08458368031085683
AALRLQYL	8	Unmodified	_AALRLQYL_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	A375_MHC_IP_R2	2	474.6871032714844	2	474.287277	946.560001	-0.59669	-0.000283	-0.13133	-6.2286E-05	-0.72802	-0.00034529	474.28718477241176	75.109	0.60789	75.847	75.57	76.178	0.73752					24	11	3	0	0	0	0.03885	1	28494	28494		120.86	16.546	1	9778000			188	5564	132	133	175	175					0.08458368031085683
AALRRIKLKKF	11	Unmodified	_AALRRIKLKKF_					0	0	0			REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	MSMS	A375_MHC_IP_R2	2	672.8281860351562	2	672.453531	1342.89251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.76	1	144.78	144.28	145.28	0.021408								0	0	0	0.1636	1	56537	56537		0	0	1		+		189	18720	133	134	176	176					0.2347786743546294
AALYRKELTT	10	Unmodified	_AALYRKELTT_					0	0	0			REV__nc|ENSG00000131626|Q13136-2|PPFIA1;REV__nc|ENSG00000143847|O75335|PPFIA4	REV__nc|ENSG00000131626|Q13136-2|PPFIA1	MULTI-SECPEP	A375_MHC_IP_R1	1	388.94866943359375	3	389.224034	1164.65027	0.35416	0.00013785	-0.021155	-8.234E-06	0.33301	0.00012961	389.22401815537035	51.674	0.4561	51.674	51.373	51.829	0					19	8	3	0	0	0	0.9269	1	18285	18285		6.1918	2.6048	1	2125000	+		190	18614;19392	134	135	177	177					0.07453372568829764
AANAIRVY	8	Unmodified	_AANAIRVY_					0	0	0		ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	MULTI-SECPEP	A375_MHC_IP_R2	2	439.1288146972656	2	439.248152	876.481751	-0.55064	-0.00024187	-0.2288	-0.0001005	-0.77944	-0.00034237	439.24815459057965	35.207	0.35416	35.971	35.778	36.132	0.76338					10	6	2	0	0	0	0.34394	1	12761	12761		50.855	0	1	1238600			191	4713	135	136	178	178					0.03856935445844556
AANAIRVY	8	Unmodified	_AANAIRVY_					0	0	0		ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	MULTI-MATCH	A375_MHC_IP_R1	1		2	439.248152	876.481751	-0.070671	-3.1042E-05	0.012014	5.2769E-06	-0.058658	-2.5765E-05	439.2480447639107	36.095	0.4576	36.095	35.778	36.236	0	0.062056	0.00014143	NaN	50.855	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	888390			192	4713	135	136							0.03856935445844556
AANENKTW	8	Unmodified	_AANENKTW_					0	0	0		ENST00000295240.7_1_2:170336083-170338793:+|nuORF	ENST00000295240.7_1_2:170336083-170338793:+|nuORF	ENST00000295240.7_1_2:170336083-170338793:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	467.6246643066406	2	467.224874	932.435195	-0.27643	-0.00012916	-0.35965	-0.00016804	-0.63608	-0.00029719	467.2247138872584	42.054	0.50571	42.054	41.88	42.386	0					17	9	3	0	0	0	0.77123	1	14563	14563		14.582	2.9414	1	2627300			193	10495	136	137	179	179					-0.033725491761060766
AANGKLTAW	9	Unmodified	_AANGKLTAW_					0	0	0			REV__ENSG00000136628|ENST00000366923|EPRS1	REV__ENSG00000136628|ENST00000366923|EPRS1	MULTI-SECPEP	A375_MHC_IP_R1	1	466.65301513671875	2	466.253434	930.492316	-0.050094	-2.3357E-05	-0.45914	-0.00021407	-0.50923	-0.00023743	466.25314221697255	35.735	1.1201	35.735	35.013	36.133	0					35	21	3	0	0	0	0.064992	1	11879	11879		78.149	20.427	1	9488600	+		194	18949	137	138	180	180					0.02428918100270039
AANGKLTAW	9	Unmodified	_AANGKLTAW_					0	0	0			REV__ENSG00000136628|ENST00000366923|EPRS1	REV__ENSG00000136628|ENST00000366923|EPRS1	MULTI-SECPEP	A375_MHC_IP_R2	2	466.6529235839844	2	466.253434	930.492316	-0.85613	-0.00039918	0.38427	0.00017917	-0.47187	-0.00022001	466.2535435314972	34.888	1.4184	35.651	35.068	36.486	0.76338					46	27	3	0	0	0	0.07754	1	12591	12591		64.236	5.5575	1	7521400	+		195	18949	137	138	181	181					0.02428918100270039
AANLRETF	8	Unmodified	_AANLRETF_					0	0	0		ENSG00000164305|ENST00000308394|CASP3	ENSG00000164305|ENST00000308394|CASP3	ENSG00000164305|ENST00000308394|CASP3	MULTI-MSMS	A375_MHC_IP_R1	1	461.6429138183594	2	461.243067	920.47158	-0.60032	-0.00027689	0.38313	0.00017672	-0.21719	-0.00010018	461.2432600002756	38.293	0.50993	38.293	38.067	38.577	0					17	9	3	0	0	0	0.052283	1	12991	12991		103.75	36.404	1	8338300			196	6819	138	139	182	182					0.008163277206108432
AANLRETF	8	Unmodified	_AANLRETF_					0	0	0		ENSG00000164305|ENST00000308394|CASP3	ENSG00000164305|ENST00000308394|CASP3	ENSG00000164305|ENST00000308394|CASP3	MULTI-SECPEP	A375_MHC_IP_R2	2	461.6426696777344	2	461.243067	920.47158	-0.8535	-0.00039367	0.26476	0.00012212	-0.58874	-0.00027155	461.2431830372943	37.426	0.45915	38.197	38.02	38.479	0.7709					16	8	3	0	0	0	0.096295	1	13703	13703		92.491	35.02	1	5898800			197	6819	138	139	183	183					0.008163277206108432
AANPHSFVF	9	Unmodified	_AANPHSFVF_					0	0	0		nc|ENSG00000130810|Q9NQ55-3|PPAN;nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN	nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-3|PPAN	MULTI-MSMS	A375_MHC_IP_R1	1	495.64569091796875	2	495.245609	988.476666	-0.34858	-0.00017263	0.12041	5.9632E-05	-0.22817	-0.000113	495.245681595828	61.763	1.2277	61.763	61.483	62.711	0					72	23	5	0	0	0	0.0092471	4	22263	22232;22263;22286;22368		111.29	70.838	1	142800000			198	14602	139	140	184;185;186;187	185					-0.01803368416756257
AANPHSFVF	9	Unmodified	_AANPHSFVF_					0	0	0		nc|ENSG00000130810|Q9NQ55-3|PPAN;nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN	nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-3|PPAN	MULTI-MSMS	A375_MHC_IP_R2	2	495.6449279785156	2	495.245609	988.476666	-0.77495	-0.00038379	-0.017829	-8.83E-06	-0.79277	-0.00039262	495.2456022766349	60.898	1.3613	61.643	61.263	62.624	0.74503					64	26	4	0	0	0	0.0028027	2	22991	22991;23031		139.14	85.563	1	180540000			199	14602	139	140	188;189	188					-0.01803368416756257
AANWTAGFGRG	11	Unmodified	_AANWTAGFGRG_					0	0	0		ENSG00000170837|ENST00000304411|GPR27	ENSG00000170837|ENST00000304411|GPR27	ENSG00000170837|ENST00000304411|GPR27	MSMS	A375_MHC_IP_R2	2	554.1805419921875	2	554.270147	1106.52574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.5	1	129.74	129.24	130.24	0.23946								0	0	0	0.16097	1	50896	50896		13.615	1.0833	1				200	7547	140	141	190	190					-0.023260801278183862
AAPAEERDIP	10	Unmodified	_AAPAEERDIP_					0	0	0		ENST00000592447.5_1_18:11886458-11886668:-|nuORF;ENST00000592894.5_1_18:11885030-11886668:-|nuORF;ENST00000589731.5_1_18:11886458-11897263:-|nuORF;nc|ENSG00000154889|Q53F39-2|MPPE1;nc|ENSG00000154889|Q53F39-3|MPPE1;ENSG00000154889|ENST00000588072|MPPE1	ENST00000592447.5_1_18:11886458-11886668:-|nuORF	ENST00000592447.5_1_18:11886458-11886668:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	357.4487609863281	3	356.848856	1067.52474	-0.55824	-0.00019921	0.40432	0.00014428	-0.15392	-5.4927E-05	356.84872031012077	22.459	0.25584	23.079	22.949	23.204	0.61958					7	4	2	0	0	0	0.93799	1	7165	7165		1.7423	0.089654	1	545240			201	6115	141	142	191	191					-0.006323392873810008
AAPAFKGG	8	Unmodified	_AAPAFKGG_					0	0	0		nc|ENSG00000266074|Q9P281|BAHCC1;ENSG00000266074|ENST00000675386|BAHCC1	nc|ENSG00000266074|Q9P281|BAHCC1	nc|ENSG00000266074|Q9P281|BAHCC1	MULTI-SECPEP	A375_MHC_IP_R2	2	359.94140625	2	359.697764	717.380974	-0.38668	-0.00013909	0.41043	0.00014763	0.023746	8.5414E-06	359.69787916581043	40.813	0.40811	41.588	41.335	41.743	0.77451					11	7	2	0	0	0	0.972	1	15085	15085		5.7604	0.52976	1	1292300			202	14934	142	143	192	192					0.01097903463005423
AAPAFKGG	8	Unmodified	_AAPAFKGG_					0	0	0		nc|ENSG00000266074|Q9P281|BAHCC1;ENSG00000266074|ENST00000675386|BAHCC1	nc|ENSG00000266074|Q9P281|BAHCC1	nc|ENSG00000266074|Q9P281|BAHCC1	MULTI-MATCH	A375_MHC_IP_R1	1		2	359.697764	717.380974	-0.1648	-5.9278E-05	0.58327	0.0002098	0.41847	0.00015052	359.6978098086737	41.648	0.71308	41.648	41.47	42.183	0	0.030054	6.1725E-05	NaN	5.7604	14	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1304800			203	14934	142	143							0.01097903463005423
AAPAPFVRA	9	Unmodified	_AAPAPFVRA_					0	0	0			REV__ENST00000274605.5_1_5:177540505-177546575:+|nuORF	REV__ENST00000274605.5_1_5:177540505-177546575:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	450.6582336425781	2	450.25852	898.502486	0.22912	0.00010316	-0.36059	-0.00016236	-0.13147	-5.9195E-05	450.2583169831906	48.348	1.0128	48.348	47.92	48.933	0					52	19	3	0	0	0	0.20094	1	16994	16994		44.407	0	1	14803000	+		204	23290	143	144	193	193					0.04917525825510438
AAPCRQTCF	9	Unmodified	_AAPCRQTCF_					0	0	0			REV__nc|ENSG00000157890|A6BM72-2|MEGF11	REV__nc|ENSG00000157890|A6BM72-2|MEGF11	MSMS	A375_MHC_IP_R1	1	498.6526184082031	2	498.723129	995.431706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.834	1	56.834	56.334	57.334	0								0	0	0	0.15486	1	20368	20368		11.64	0.52583	1		+		205	20053	144	145	194	194					-0.06619258545970297
AAPDSVLRLVV	11	Unmodified	_AAPDSVLRLVV_					0	0	0		ENST00000462833.5_1_3:123167964-123168408:-|nuORF	ENST00000462833.5_1_3:123167964-123168408:-|nuORF	ENST00000462833.5_1_3:123167964-123168408:-|nuORF	MSMS	A375_MHC_IP_R2	2	570.2466430664062	2	570.342781	1138.67101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122	1	122.44	121.94	122.94	0.44488								0	0	0	0.16138	1	46713	46713		11.495	0	1				206	12206	145	146	195	195					0.10721962948491637
AAPFVARIVEG	11	Unmodified	_AAPFVARIVEG_					0	0	0		tr|U7SUF9|U7SUF9_FUSNUD-methioninetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01220PE=3SV=1	tr|U7SUF9|U7SUF9_FUSNUD-methioninetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01220PE=3SV=1	tr|U7SUF9|U7SUF9_FUSNUD-methioninetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01220PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	377.6172180175781	3	377.216991	1128.62914	0.44135	0.00016648	0.28831	0.00010876	0.72966	0.00027524	377.2170162891993	51.956	0.50832	51.956	51.778	52.287	0					13	9	2	0	0	0	0.62292	1	18486	18486		12.856	0	1	2962100			207	29765	146	147	196	196					0.0699740725999618
AAPGAPGG	8	Unmodified	_AAPGAPGG_					0	0	0		ENSG00000109762|ENST00000652585|SNX25;tr|U7T1Y4|U7T1Y4_FUSNUSodium:protonantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00685PE=4SV=1;ENSG00000283632|ENST00000413988|EXOC3L2	ENSG00000109762|ENST00000652585|SNX25	ENSG00000109762|ENST00000652585|SNX25	MULTI-SECPEP	A375_MHC_IP_R2	2	596.6336059570312	1	597.299101	596.291825	-0.45315	-0.00027067	2.7796	0.0016603	2.3265	0.0013896	597.3023655318319	84.511	0.70961	85.247	84.968	85.677	0.73601					18	13	2	0	0	0	0.972	1	32176	32176		0.79363	0	1	1597800			208	2890	147	148	197	197					-0.02246931496506477
AAPGAQRHLWL	11	Unmodified	_AAPGAQRHLWL_					0	0	0		ENST00000492871.5_1_1:228328930-228336395:+|nuORF;ENST00000485838.5_1_1:228327993-228336550:+|nuORF	ENST00000492871.5_1_1:228328930-228336395:+|nuORF	ENST00000492871.5_1_1:228328930-228336395:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	407.6506042480469	3	407.228001	1218.66217	-0.45733	-0.00018624	0.70589	0.00028746	0.24856	0.00010122	407.22825651328503	37.972	0.60944	37.972	37.71	38.319	0					25	11	3	0	0	0	0.73228	1	12943	12943		3.0723	3.0723	1	18383000			209	12576	148	149	198	198					0.06159034102711303
AAPGLWQFQR	10	Unmodified	_AAPGLWQFQR_					0	0	0			REV__ENST00000360392.4_1_14:51464439-51464655:-|nuORF	REV__ENST00000360392.4_1_14:51464439-51464655:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	392.6313781738281	3	391.876969	1172.60908	-0.49068	-0.00019229	3.422	0.001341	2.9313	0.0011487	391.8786878703466	19.764	0.35269	20.374	20.248	20.6	0.61029					10	6	2	0	0	0	0.92603	1	6162	6162		1.5923	1.4108	1	626170	+		210	23891	149	150	199	199					0.02967656320038259
AAPGRFSF	8	Unmodified	_AAPGRFSF_					0	0	0		ENST00000565758.1_1_16:30441199-30441310:-|nuORF;ENSG00000179958|ENST00000319285|DCTPP1	ENST00000565758.1_1_16:30441199-30441310:-|nuORF	ENST00000565758.1_1_16:30441199-30441310:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	427.1218566894531	2	426.72177	851.428987	-0.11618	-4.9578E-05	0.86028	0.0003671	0.7441	0.00031752	426.72176937291425	52.296	0.55785	52.296	52.034	52.592	0					19	10	3	0	0	0	0.74945	1	18615	18615		20.454	2.3186	1	1545000			211	8269	150	151	200	200					-0.0026702261695845664
AAPHLGTPESF	11	Unmodified	_AAPHLGTPESF_					0	0	0		ENST00000532885.5_1_11:64128013-64135652:+|nuORF	ENST00000532885.5_1_11:64128013-64135652:+|nuORF	ENST00000532885.5_1_11:64128013-64135652:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	376.9559631347656	3	376.189101	1125.54547	0.49189	0.00018505	-0.68663	-0.0002583	-0.19474	-7.3258E-05	376.52303686950853	20.716	0.46075	20.716	20.536	20.997	0					13	8	2	0	0	0	0.98977	1	5315	5315		3.0723	2.11	1	772310			212	13190	151	152	201	201					-0.012277489077177961
AAPHSPRRGPG	11	Unmodified	_AAPHSPRRGPG_					0	0	0		ENST00000552565.5_1_12:113753225-113756937:-|nuORF	ENST00000552565.5_1_12:113753225-113756937:-|nuORF	ENST00000552565.5_1_12:113753225-113756937:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	368.9359130859375	3	368.200334	1101.57917	0.33273	0.00012251	2.5386	0.00093471	2.8713	0.0010572	368.5355565626697	33.814	0.40363	33.814	33.597	34.001	0					18	7	4	0	0	0	0.99526	1	11123	11123		0.094841	0	1	3211500			213	13392	152	153	202	202					0.03244717374695938
AAPILHKDLV	10	Unmodified	_AAPILHKDLV_					0	0	0			REV__ENST00000486241.1_1_17:1265194-1303470:-|nuORF	REV__ENST00000486241.1_1_17:1265194-1303470:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	358.91339111328125	3	359.553603	1075.63898	-0.067282	-2.4191E-05	0.057359	2.0624E-05	-0.0099225	-3.5677E-06	359.5535228053559	24.351	0.25337	24.351	24.194	24.447	0					6	4	2	0	0	0	0.91909	1	6823	6823		5.4027	2.9042	1	1175700	+		214	17565	153	154	203	203					0.1041859526535518
AAPIRRDT	8	Unmodified	_AAPIRRDT_					0	0	0			REV__PCDH18|p.G909R|2|0.25|ENSG00000189184|chr4:137528493-137528493|C/T|missense_variant	REV__PCDH18|p.G909R|2|0.25|ENSG00000189184|chr4:137528493-137528493|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	450.65625	2	450.256508	898.498464	-0.085175	-3.8351E-05	-0.054395	-2.4492E-05	-0.13957	-6.2842E-05	450.25638744913783	114.28	3.1006	114.99	113.51	116.61	0.70985					89	60	2	0	0	0	0.77624	1	43138	43138		8.5933	3.3626	1	4317600	+		215	27724	154	155	204	204					0.045154363318033575
AAPITIIKKIA	11	Unmodified	_AAPITIIKKIA_					0	0	0			REV__POLE|p.Q1142K|1|0.11|ENSG00000177084|chr12:132657384-132657384|G/T|missense_variant	REV__POLE|p.Q1142K|1|0.11|ENSG00000177084|chr12:132657384-132657384|G/T|missense_variant	MSMS	A375_MHC_IP_R1	1	569.7849731445312	2	569.881542	1137.74853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.22	1	122.22	121.72	122.72	0								0	0	0	0.1624	1	45460	45460		6.2058	3.2105	1		+		216	27820	155	156	205	205					0.18516600884731815
AAPITIIKKIA	11	Unmodified	_AAPITIIKKIA_					0	0	0			REV__POLE|p.Q1142K|1|0.11|ENSG00000177084|chr12:132657384-132657384|G/T|missense_variant	REV__POLE|p.Q1142K|1|0.11|ENSG00000177084|chr12:132657384-132657384|G/T|missense_variant	MSMS	A375_MHC_IP_R1	1	569.8543701171875	2	569.881542	1137.74853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.26	1	122.26	121.76	122.76	0								0	0	0	0.1624	1	45477	45477		6.2058	2.9245	1		+		217	27820	155	156	206	206					0.18516600884731815
AAPKKGAAGP	10	Unmodified	_AAPKKGAAGP_					0	0	0			REV__nc|ENSG00000019144|Q86UU1-2|PHLDB1	REV__nc|ENSG00000019144|Q86UU1-2|PHLDB1	MULTI-MSMS	A375_MHC_IP_R2	2	434.6792297363281	2	434.255977	866.497401	-0.71251	-0.00030941	0.061987	2.6918E-05	-0.65053	-0.00028249	434.2559406671036	25.727	0.66276	26.387	26.194	26.857	0.65992					29	12	3	0	0	0	0.69306	1	8810	8810		13.906	2.2658	1	12035000	+		218	16258	156	157	207	207					0.05881221962908967
AAPKQAGL	8	Unmodified	_AAPKQAGL_					0	0	0			REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	MULTI-SECPEP	A375_MHC_IP_R1	1	377.8805236816406	2	378.224146	754.433738	0.3224	0.00012194	-0.18967	-7.1739E-05	0.13272	5.0199E-05	378.2239702191926	34.114	0.45536	34.114	33.848	34.303	0					13	8	2	0	0	0	0.93416	1	11115	11115		20.871	5.103	1	2022000	+		219	18620	157	158	208	208					0.046698615258037535
AAPLGPFRTSL	11	Unmodified	_AAPLGPFRTSL_					0	0	0			REV__ENST00000513061.1_1_4:172734932-172737255:+|nuORF	REV__ENST00000513061.1_1_4:172734932-172737255:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	377.61712646484375	3	377.216991	1128.62914	0.063306	2.388E-05	-0.017429	-6.5746E-06	0.045877	1.7305E-05	377.21695716320045	51.154	0.45534	51.908	51.664	52.119	0.75345					15	8	2	0	0	0	0.60747	1	19260	19260		13.519	0	1	2145600	+		220	25634	158	159	209	209					0.0699740725999618
AAPLKALKLD	10	Unmodified	_AAPLKALKLD_					0	0	0			REV__HERC2|p.E1930K|1|0.46|ENSG00000128731|chr15:28220509-28220509|C/T|missense_variant	REV__HERC2|p.E1930K|1|0.46|ENSG00000128731|chr15:28220509-28220509|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	519.6721801757812	2	520.329142	1038.64373	-0.97686	-0.00050829	-0.30197	-0.00015712	-1.2788	-0.00066541	520.3289644016882	24.451	0.50706	25.095	24.907	25.414	0.64368					13	9	2	0	0	0	0.94819	1	7973	7973		0	0	1	5129300	+		221	26734	159	160	210	210					0.12595479408105348
AAPLWHTERV	10	Unmodified	_AAPLWHTERV_					0	0	0			REV__ENST00000466602.1_1_2:219647134-219677473:+|nuORF	REV__ENST00000466602.1_1_2:219647134-219677473:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	393.60870361328125	3	393.88049	1178.61964	-0.28194	-0.00011105	0.10215	4.0236E-05	-0.17978	-7.0814E-05	393.88040948098	50.73	0.60672	51.484	51.108	51.715	0.75406					33	11	4	0	0	0	0.67901	1	19138	19138		14.957	3.4393	1	10794000	+		222	25040	160	161	211	211					0.03747638974459733
AAPPLPEPSL	10	Unmodified	_AAPPLPEPSL_					0	0	0		nc|ENSG00000090924|Q9H7P9-3|PLEKHG2;ENSG00000090924|ENST00000425673|PLEKHG2	nc|ENSG00000090924|Q9H7P9-3|PLEKHG2	nc|ENSG00000090924|Q9H7P9-3|PLEKHG2	MULTI-SECPEP	A375_MHC_IP_R1	1	495.7232666015625	2	496.276575	990.538597	-0.46517	-0.00023085	-0.16824	-8.3494E-05	-0.63341	-0.00031435	496.2764135088147	83.789	1.0142	83.789	83.277	84.292	0					25	19	2	0	0	0	0.73628	1	30602	30602		15.847	1.0089	1	5668400			223	1964	161	162	212	212					0.04294938211717181
AAPPPHLGL	9	Unmodified	_AAPPPHLGL_					0	0	0		ENST00000585362.6_3_19:1104424-1105401:+|nuORF	ENST00000585362.6_3_19:1104424-1105401:+|nuORF	ENST00000585362.6_3_19:1104424-1105401:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	436.9423522949219	2	436.75307	871.491587	-0.12031	-5.2544E-05	-3.1363	-0.0013698	-3.2566	-0.0014223	436.7508255923366	33.937	0.40465	33.937	33.698	34.103	0					10	7	2	0	0	0	0.64653	1	11145	11145		14.582	0	1	1009400			224	13715	162	163	213	213					0.05070123451230302
AAPQLPHG	8	Unmodified	_AAPQLPHG_					0	0	0			REV__ENSG00000183779|ENST00000331569|ZNF703	REV__ENSG00000183779|ENST00000331569|ZNF703	MULTI-SECPEP	A375_MHC_IP_R2	2	396.1139831542969	2	395.713945	789.413337	-0.493	-0.00019509	0.45857	0.00018146	-0.034428	-1.3624E-05	395.71406672865294	59.766	0.35338	60.513	60.4	60.753	0.74714					11	6	2	0	0	0	0.972	1	22656	22656		0.69038	0	1	1513700	+		225	21778	163	164	214	214					0.01020690866005225
AAPRPPPKPM	10	Unmodified	_AAPRPPPKPM_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MSMS	A375_MHC_IP_R1	1	354.9357604980469	3	354.535667	1060.58517	0.049283	1.7473E-05	-0.13326	-4.7247E-05	-0.083982	-2.9775E-05	354.53562664679146	20.257	0.76158	20.257	19.928	20.69	0					22	14	2	0	0	0	0.63336	1	5216	5216		18.373	15.378	1	927930			226	9189	164	165	215	215					0.05730099561992574
AAPTWLLQ	8	Unmodified	_AAPTWLLQ_					0	0	0			REV__ENST00000395738.2_1_22:50921135-50921831:+|nuORF	REV__ENST00000395738.2_1_22:50921135-50921831:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	450.1402893066406	2	450.252903	898.491253	-0.6991	-0.00031477	-0.47626	-0.00021444	-1.1754	-0.00052921	450.2529332541018	26.291	0.25423	26.951	26.754	27.008	0.65992					6	4	2	0	0	0	0.972	1	8879	8879		10.183	4.9527	1	787970	+		227	24327	165	166	216	216					0.03794703731375648
AAPTWVHA	8	Unmodified	_AAPTWVHA_					0	0	0			REV__ENST00000485925.5_1_9:136305545-136324175:+|nuORF	REV__ENST00000485925.5_1_9:136305545-136324175:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	426.3101806640625	2	426.72177	851.428987	-0.37832	-0.00016144	-0.19558	-8.3458E-05	-0.5739	-0.0002449	426.72171767011486	51.526	0.45669	52.278	51.915	52.372	0.75225					14	8	2	0	0	0	0.93416	1	19257	19257		2.3027	0	1	1656900	+		228	20163	166	167	217	217					-0.002670226169698253
AAPWLGGA	8	Unmodified	_AAPWLGGA_					0	0	0			REV__ENST00000477714.1_1_22:45706022-45724091:+|nuORF	REV__ENST00000477714.1_1_22:45706022-45724091:+|nuORF	MSMS	A375_MHC_IP_R2	2	371.59783935546875	2	371.697764	741.380974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.35	1	106.12	105.62	106.62	0.76308								0	0	0	0.16876	1	39848	39848		0.79363	0	1		+		229	25199	167	168	218	218					-6.09653699257251E-05
AAQEAVKLY	9	Unmodified	_AAQEAVKLY_					0	0	0		nc|ENSG00000271793|O60506-5|SYNCRIP;nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP	nc|ENSG00000271793|O60506-5|SYNCRIP	nc|ENSG00000271793|O60506-5|SYNCRIP	MULTI-SECPEP	A375_MHC_IP_R1	1	497.17401123046875	2	496.7742	991.533846	-0.57803	-0.00028715	0.25494	0.00012665	-0.32309	-0.0001605	496.7742690892008	41.803	0.7128	41.803	41.521	42.233	0					33	13	4	0	0	0	0.011143	1	14420	14420		136.39	92.62	1	26893000			230	4666	168	169	219	219					0.03774054068958321
AAQEAVKLY	9	Unmodified	_AAQEAVKLY_					0	0	0		nc|ENSG00000271793|O60506-5|SYNCRIP;nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP	nc|ENSG00000271793|O60506-5|SYNCRIP	nc|ENSG00000271793|O60506-5|SYNCRIP	MULTI-SECPEP	A375_MHC_IP_R2	2	497.17364501953125	2	496.7742	991.533846	-0.73209	-0.00036369	-0.014851	-7.3776E-06	-0.74694	-0.00037106	496.7741326112725	40.989	0.96342	41.764	41.438	42.401	0.77451					43	18	4	0	0	0	0.011418	1	15176	15176		114.19	58.009	1	28075000			231	4666	168	169	220	220					0.03774054068958321
AAQFAREHLW	10	Unmodified	_AAQFAREHLW_					0	0	0		nc|ENSG00000170836|O15297-2|PPM1D;ENSG00000170836|ENST00000305921|PPM1D	nc|ENSG00000170836|O15297-2|PPM1D	nc|ENSG00000170836|O15297-2|PPM1D	MULTI-MSMS	A375_MHC_IP_R1	1	410.1241455078125	3	410.21224	1227.61489	-0.23606	-9.6833E-05	0.23214	9.5226E-05	-0.0039163	-1.6065E-06	410.21236240699466	39.769	0.66157	39.769	39.592	40.254	0					22	12	3	0	0	0	0.57505	1	13670	13670		19.626	7.4512	1	6249700			232	7546	169	170	221	221					0.010187548316935136
AAQFAREHLW	10	Unmodified	_AAQFAREHLW_					0	0	0		nc|ENSG00000170836|O15297-2|PPM1D;ENSG00000170836|ENST00000305921|PPM1D	nc|ENSG00000170836|O15297-2|PPM1D	nc|ENSG00000170836|O15297-2|PPM1D	MULTI-MSMS	A375_MHC_IP_R2	2	410.1240539550781	3	410.21224	1227.61489	-0.2421	-9.9314E-05	-0.22175	-9.0966E-05	-0.46386	-0.00019028	410.2121019681795	38.882	0.46183	39.657	39.401	39.863	0.77451					20	8	3	0	0	0	0.57505	1	14391	14391		19.626	4.6688	1	5625800			233	7546	169	170	222	222					0.010187548316935136
AAQFIPKFF	9	Unmodified	_AAQFIPKFF_					0	0	0		nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5;ENST00000530300.1_1_11:43333659-43340360:+|nuORF	nc|ENSG00000166181|Q9BZZ5-3|API5	nc|ENSG00000166181|Q9BZZ5-3|API5	MULTI-SECPEP	A375_MHC_IP_R1	1	535.1969604492188	2	534.797478	1067.5804	-0.49733	-0.00026597	1.1753	0.00062855	0.67796	0.00036257	534.7984729473056	109.84	0.91478	109.84	109.58	110.49	0					26	17	3	0	0	0	0.11436	1	40293	40293		68.081	38.999	1	1964400			234	7037	170	171	223	223					0.049315386908801884
AAQFIPKFF	9	Unmodified	_AAQFIPKFF_					0	0	0		nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5;ENST00000530300.1_1_11:43333659-43340360:+|nuORF	nc|ENSG00000166181|Q9BZZ5-3|API5	nc|ENSG00000166181|Q9BZZ5-3|API5	MULTI-SECPEP	A375_MHC_IP_R2	2	535.1969604492188	2	534.797478	1067.5804	-0.73518	-0.00039317	1.1935	0.0006383	0.45835	0.00024513	534.7985736096349	108.98	0.86543	109.72	109.47	110.33	0.74684					26	16	3	0	0	0	0.11436	1	41149	41149		68.081	31.954	1	2475500			235	7037	170	171	224	224					0.049315386908801884
AAQHHENYWDP	11	Unmodified	_AAQHHENYWDP_					0	0	0		nc|ENSG00000204314|Q99946-2|PRRT1;ENSG00000204314|ENST00000211413|PRRT1	nc|ENSG00000204314|Q99946-2|PRRT1	nc|ENSG00000204314|Q99946-2|PRRT1	MSMS	A375_MHC_IP_R2	2	456.62353515625	3	456.530297	1366.56906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.075	1	25.718	25.218	26.218	0.64368								0	0	0	0.16275	1	8333	8333		4.4062	0.56024	1				236	9427	171	172	225	225					-0.0995593514119264
AAQITQRKW	9	Unmodified	_AAQITQRKW_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	A375_MHC_IP_R1	1	551.7113037109375	2	551.311815	1100.60908	-0.64873	-0.00035765	-0.28273	-0.00015587	-0.93146	-0.00051352	551.3117284557239	24.622	0.30166	24.622	24.447	24.749	0					10	5	3	0	0	0	0.27293	1	7067	7067		34.222	23.422	1	6554000			237	9742	172	173	226	226					0.06279656320020877
AAQITQRKW	9	Unmodified	_AAQITQRKW_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-SECPEP	A375_MHC_IP_R1	1	368.29296875	3	367.876969	1100.60908	0.16872	6.2069E-05	0.28329	0.00010422	0.45201	0.00016628	367.8770424593217	24.622	0.40527	24.622	24.498	24.903	0					16	7	3	0	0	0	0.10103	1	7047	7047		57.249	39.386	1	14224000			238	9742	172	173	227	227					0.06279656320020877
AAQITQRKW	9	Unmodified	_AAQITQRKW_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MSMS	A375_MHC_IP_R2	2	551.71142578125	2	551.311815	1100.60908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.008	1	24.644	24.144	25.144	0.63645								0	0	0	0.058934	1	7818	7818		55.235	26.74	1				239	9742	172	173	228	228					0.06279656320020877
AAQITQRKW	9	Unmodified	_AAQITQRKW_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-SECPEP	A375_MHC_IP_R2	2	368.3044738769531	3	367.876969	1100.60908	-0.11477	-4.2221E-05	0.71108	0.00026159	0.59631	0.00021937	367.87719416269186	24.34	0.45694	24.983	24.755	25.212	0.64368					11	8	2	0	0	0	0.46045	1	7986	7986		16.566	12.979	1	2741400			240	9742	172	173	229	229					0.06279656320020877
AAQLMKGW	8	Unmodified	_AAQLMKGW_					0	0	0		nc|ENSG00000130177|Q13042-3|CDC16	nc|ENSG00000130177|Q13042-3|CDC16	nc|ENSG00000130177|Q13042-3|CDC16	MSMS	A375_MHC_IP_R1	1	452.66864013671875	2	452.739105	903.463658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.807	1	40.807	40.307	41.307	0								0	0	0	0.16876	1	14050	14050		20.871	0	1				241	14597	173	174	230	230					0.008064771994895636
AAQQKFAE	8	Unmodified	_AAQQKFAE_					0	0	0		nc|ENSG00000163006|Q96M89-2|CCDC138;ENSG00000163006|ENST00000295124|CCDC138	nc|ENSG00000163006|Q96M89-2|CCDC138	nc|ENSG00000163006|Q96M89-2|CCDC138	MSMS	A375_MHC_IP_R2	2	446.6285095214844	2	446.729792	891.445031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.681	1	42.456	41.956	42.956	0.77451								0	0	0	0.16876	1	15476	15476		9.3474	1.4373	1				242	6621	174	175	231	231					-0.005033611707176533
AAQTPRQKY	9	Unmodified	_AAQTPRQKY_					0	0	0		ENSG00000072832|ENST00000324989|CRMP1	ENSG00000072832|ENST00000324989|CRMP1	ENSG00000072832|ENST00000324989|CRMP1	MULTI-MSMS	A375_MHC_IP_R1	1	355.579345703125	3	354.861207	1061.56179	-0.34301	-0.00012172	-0.19243	-6.8287E-05	-0.53544	-0.00019001	354.8611630824489	26.094	1.1114	26.094	25.866	26.978	0					68	21	5	0	0	0	0.64808	1	7864	7864		7.609	1.4171	1	248210000			243	1550	175	176	232	232					0.03347377049044553
AAQYDDNS	8	Unmodified	_AAQYDDNS_					0	0	0			REV__ENSG00000173769|ENST00000309765|TOPAZ1	REV__ENSG00000173769|ENST00000309765|TOPAZ1	MSMS	A375_MHC_IP_R1	1	441.69708251953125	2	442.175047	882.33554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.14	1	16.14	15.64	16.64	0								0	0	0	0.16876	1	3742	3742		0.79363	0	1		+		244	21247	176	177	233	233					-0.11033411580706343
AAQYGHYSTT	10	Unmodified	_AAQYGHYSTT_					0	0	0		nc|ENSG00000104064|Q06547-4|GABPB1;nc|ENSG00000104064|Q06547-3|GABPB1;ENSG00000104064|ENST00000380877|GABPB1;nc|ENSG00000104064|Q06547|GABPB1	nc|ENSG00000104064|Q06547-4|GABPB1	nc|ENSG00000104064|Q06547-4|GABPB1	MULTI-SECPEP	A375_MHC_IP_R1	1	550.1453247070312	2	549.74617	1097.47779	-0.75613	-0.00041568	-0.69625	-0.00038276	-1.4524	-0.00079845	549.7456728703912	130.13	0.20374	130.13	130.01	130.21	0					5	3	2	0	0	0	0.92957	1	50085	50085		10.074	1.9184	1	8368600			245	2482	177	178	234	234					-0.0670519883851739
AAQYGHYSTT	10	Unmodified	_AAQYGHYSTT_					0	0	0		nc|ENSG00000104064|Q06547-4|GABPB1;nc|ENSG00000104064|Q06547-3|GABPB1;ENSG00000104064|ENST00000380877|GABPB1;nc|ENSG00000104064|Q06547|GABPB1	nc|ENSG00000104064|Q06547-4|GABPB1	nc|ENSG00000104064|Q06547-4|GABPB1	MULTI-MATCH	A375_MHC_IP_R2	2		2	549.74617	1097.47779	-0.80977	-0.00044517	-0.60147	-0.00033066	-1.4112	-0.00077583	549.7456276052083	129.91	0.1515	130.12	130.05	130.2	0.2142	-0.0059009	7.278E-05	NaN	10.074	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4827000			246	2482	177	178							-0.0670519883851739
AARAPGHRLP	10	Unmodified	_AARAPGHRLP_					0	0	0			REV__ENST00000337288.9_2_2:96861281-96874146:-|nuORF	REV__ENST00000337288.9_2_2:96861281-96874146:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	522.6953735351562	2	523.304324	1044.5941	-0.34592	-0.00018102	-1.7426	-0.00091191	-2.0885	-0.0010929	523.303277655102	125.88	1.9675	125.88	125.45	127.42	0					50	20	3	0	0	0	0.71466	1	48619	48619		5.7319	1.203	1	83856000	+		247	23690	178	179	235	235					0.0735820924271593
AARAVPEL	8	Unmodified	_AARAVPEL_					0	0	0		ENST00000526564.1_1_8:145724415-145725789:+|nuORF;ENSG00000160972|ENST00000435887|PPP1R16A	ENST00000526564.1_1_8:145724415-145725789:+|nuORF	ENST00000526564.1_1_8:145724415-145725789:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	414.1424865722656	2	413.742702	825.470852	0.29475	0.00012195	-0.018092	-7.4855E-06	0.27666	0.00011447	413.7425953643708	53.428	0.66073	53.428	53.148	53.809	0					18	12	2	0	0	0	0.68907	1	19062	19062		38.151	6.0342	1	2477400			248	6454	179	180	236	236					0.05113533071573784
AARAVPEL	8	Unmodified	_AARAVPEL_					0	0	0		ENST00000526564.1_1_8:145724415-145725789:+|nuORF;ENSG00000160972|ENST00000435887|PPP1R16A	ENST00000526564.1_1_8:145724415-145725789:+|nuORF	ENST00000526564.1_1_8:145724415-145725789:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	413.742702	825.470852	-0.43929	-0.00018175	0.20287	8.3936E-05	-0.23642	-9.7819E-05	413.7427552968444	52.526	0.75747	53.278	52.882	53.639	0.75225	-0.074758	5.5715E-05	NaN	38.151	16	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2167200			249	6454	179	180							0.05113533071573784
AARCRRRNF	9	Unmodified	_AARCRRRNF_					0	0	0			REV__nc|ENSG00000157388|Q01668-4|CACNA1D	REV__nc|ENSG00000157388|Q01668-4|CACNA1D	MULTI-SECPEP	A375_MHC_IP_R1	1	384.62054443359375	3	383.877197	1148.60976	0.45051	0.00017294	0.098697	3.7887E-05	0.54921	0.00021083	384.21178923646664	51.62	0.65975	51.62	51.27	51.93	0					19	12	2	0	0	0	0.78348	1	18352	18352		4.897	1.3043	1	1441400	+		250	20026	180	181	237	237					0.04140172488087046
AARDVFLML	9	Unmodified	_AARDVFLML_					0	0	0		nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A;ENSG00000068796|ENST00000407818|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	MULTI-MSMS	A375_MHC_IP_R1	1	518.6860961914062	2	518.28642	1034.55829	-0.28277	-0.00014656	-0.22305	-0.00011561	-0.50582	-0.00026216	518.2862901515836	107.62	0.61317	107.62	107.34	107.95	0					27	11	3	0	0	0	0.36834	1	39458	39458		26.268	4.5215	1	15867000			251	1467	181	182	238	238					0.0423899095080742
AARDVFLML	9	Unmodified	_AARDVFLML_					0	0	0		nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A;ENSG00000068796|ENST00000407818|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	518.28642	1034.55829	-0.76656	-0.0003973	0.017174	8.9012E-06	-0.74938	-0.00038839	518.2864145497047	106.65	0.71201	107.41	107.04	107.75	0.75977	-0.10709	0.00011371	NaN	26.268	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15118000			252	1467	181	182							0.0423899095080742
AAREWNLPPN	10	Unmodified	_AAREWNLPPN_					0	0	0		ENSG00000116455|ENST00000235090|WDR77;nc|ENSG00000116455|Q9BQA1-2|WDR77	ENSG00000116455|ENST00000235090|WDR77	ENSG00000116455|ENST00000235090|WDR77	MULTI-MSMS	A375_MHC_IP_R1	1	584.71728515625	2	584.298904	1166.58326	-0.30729	-0.00017955	-0.71804	-0.00041955	-1.0253	-0.0005991	584.2984754618149	40.918	0.25075	40.918	40.762	41.013	0					6	4	2	0	0	0	0.69306	1	14057	14057		13.906	0.86358	1	1496200			253	3396	182	183	239	239					0.006627620777635457
AARGSHTGAFV	11	Unmodified	_AARGSHTGAFV_					0	0	0			REV__ENSG00000128714|ENST00000392539|HOXD13	REV__ENSG00000128714|ENST00000392539|HOXD13	MULTI-MSMS	A375_MHC_IP_R2	2	359.4282531738281	3	358.521074	1072.54139	-0.48149	-0.00017263	0.049493	1.7744E-05	-0.432	-0.00015488	358.52106501779383	19.156	0.50439	19.759	19.583	20.088	0.60308					33	9	5	0	0	0	0.7359	1	5957	5957		1.3296	1.3296	1	77975000	+		254	18466	183	184	240	240					0.008022063892440201
AARKNKIL	8	Unmodified	_AARKNKIL_					0	0	0		ENST00000559190.5_1_15:50545740-50555509:-|nuORF;ENST00000558761.5_1_15:50545740-50557820:-|nuORF;ENST00000558679.1_1_15:50546296-50557931:-|nuORF;nc|ENSG00000140287|P19113-2|HDC;ENSG00000140287|ENST00000267845|HDC	ENST00000559190.5_1_15:50545740-50555509:-|nuORF	ENST00000559190.5_1_15:50545740-50555509:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	456.6927185058594	2	457.300719	912.586885	-0.38762	-0.00017726	0.04511	2.0629E-05	-0.34251	-0.00015663	457.3006060050171	41.582	0.30573	42.357	42.198	42.504	0.77451					8	5	2	0	0	0	0.972	1	15403	15403		6.3541	0	1	1790200			255	5138	184	185	241	241					0.12709476642260142
AARLPLDAA	9	Unmodified	_AARLPLDAA_					0	0	0		ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB;ENST00000459927.5_1_7:23286476-23287379:+|nuORF;ENST00000487890.5_1_7:23286476-23290466:+|nuORF;ENST00000474157.1_1_7:23286476-23286758:+|nuORF	ENSG00000136235|ENST00000258733|GPNMB	ENSG00000136235|ENST00000258733|GPNMB	MULTI-MSMS	A375_MHC_IP_R1	1	449.6606140136719	2	449.261259	896.507966	-0.28627	-0.00012861	0.19582	8.7974E-05	-0.090446	-4.0634E-05	449.26129201010707	46.825	1.2232	46.825	46.495	47.718	0					51	23	4	0	0	0	0.04447	1	16392	16392		66.457	11.683	1	44433000			256	4767	185	186	242	242					0.055572046173210765
AARLPLDAA	9	Unmodified	_AARLPLDAA_					0	0	0		ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB;ENST00000459927.5_1_7:23286476-23287379:+|nuORF;ENST00000487890.5_1_7:23286476-23290466:+|nuORF;ENST00000474157.1_1_7:23286476-23286758:+|nuORF	ENSG00000136235|ENST00000258733|GPNMB	ENSG00000136235|ENST00000258733|GPNMB	MULTI-MSMS	A375_MHC_IP_R2	2	449.660888671875	2	449.261259	896.507966	-0.26218	-0.00011779	-0.0041057	-1.8445E-06	-0.26629	-0.00011963	449.26121226031665	46.013	1.1636	46.778	46.353	47.517	0.76519					51	22	4	0	0	0	0.012843	1	17133	17133		92.653	36.476	1	50110000			257	4767	185	186	243	243					0.055572046173210765
AARLRAVDF	9	Unmodified	_AARLRAVDF_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF;ENST00000528296.5_1_8:146015816-146017457:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-SECPEP	A375_MHC_IP_R1	1	510.1925964355469	2	509.793258	1017.57196	-0.69296	-0.00035327	0.010114	5.1558E-06	-0.68285	-0.00034811	509.79324790618057	39.757	0.40622	39.757	39.541	39.948	0					12	7	2	0	0	0	0.31606	1	13633	13633		26.268	0	1	4307800			258	6459	186	187	244	244					0.06387984774266897
AARQPIEL	8	Unmodified	_AARQPIEL_					0	0	0		ENSG00000116752|ENST00000369541|BCAS2	ENSG00000116752|ENST00000369541|BCAS2	ENSG00000116752|ENST00000369541|BCAS2	MULTI-MSMS	A375_MHC_IP_R1	1	449.6612243652344	2	449.261259	896.507966	-0.13939	-6.2621E-05	-0.080931	-3.6359E-05	-0.22032	-9.898E-05	449.2611600281803	42.061	0.76033	42.061	41.777	42.537	0					34	14	3	0	0	0	0.063422	1	14526	14526		139.54	42.469	1	26204000			259	3429	187	188	245	245					0.055572046173210765
AARQPIEL	8	Unmodified	_AARQPIEL_					0	0	0		ENSG00000116752|ENST00000369541|BCAS2	ENSG00000116752|ENST00000369541|BCAS2	ENSG00000116752|ENST00000369541|BCAS2	MULTI-MSMS	A375_MHC_IP_R2	2	449.6611328125	2	449.261259	896.507966	-0.55267	-0.00024829	0.0039228	1.7624E-06	-0.54874	-0.00024653	449.26122289723247	41.194	0.70953	41.968	41.641	42.35	0.77451					34	13	4	0	0	0	0.037539	1	15244	15244		120.45	42.301	1	24027000			260	3429	187	188	246	246					0.055572046173210765
AARQRWFK	8	Unmodified	_AARQRWFK_					0	0	0		nc|ENSG00000138592|P40818-2|USP8;ENSG00000138592|ENST00000307179|USP8;ENST00000560379.1_1_15:50790733-50791282:+|nuORF;ENST00000419830.2_1_15:50786258-50791282:+|nuORF	nc|ENSG00000138592|P40818-2|USP8	nc|ENSG00000138592|P40818-2|USP8	MULTI-SECPEP	A375_MHC_IP_R2	2	355.459716796875	3	354.870037	1061.58828	-0.89299	-0.0003169	-0.49984	-0.00017738	-1.3928	-0.00049427	354.8698588442046	37.005	0.3539	37.776	37.513	37.867	0.7709					8	6	2	0	0	0	0.972	1	13423	13423		0	0	1	1355500			261	5001	188	189	247	247					0.05995110731009845
AARRRHAT	8	Unmodified	_AARRRHAT_					0	0	0		ENSG00000043591|ENST00000369295|ADRB1	ENSG00000043591|ENST00000369295|ADRB1	ENSG00000043591|ENST00000369295|ADRB1	MULTI-SECPEP	A375_MHC_IP_R2	2	469.49053955078125	2	469.773191	937.531829	-0.64941	-0.00030508	-0.55714	-0.00026173	-1.2065	-0.0005668	469.7727256452632	74.501	0.76291	75.238	74.958	75.721	0.73752					18	14	2	0	0	0	0.972	1	28454	28454		2.3027	0	1	1040400			262	1182	189	190	248	248					0.060564828943597604
AARRRRLRK	9	Unmodified	_AARRRRLRK_					0	0	0			REV__ENST00000451493.5_1_13:36920782-36920917:-|nuORF	REV__ENST00000451493.5_1_13:36920782-36920917:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	394.7467041015625	3	394.930401	1181.76937	-0.41094	-0.00016229	-0.4713	-0.00018613	-0.88224	-0.00034842	395.26421924575595	9.0257	0.42278	9.4727	9.2009	9.6236	0.44698					70	55	2	0	0	0	0.77827	1	2810	2810		0	0	1	91410	+		263	24892	190	191	249	249					0.18576048827571867
AARRRRLRK	9	Unmodified	_AARRRRLRK_					0	0	0			REV__ENST00000451493.5_1_13:36920782-36920917:-|nuORF	REV__ENST00000451493.5_1_13:36920782-36920917:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	394.7467041015625	3	394.930401	1181.76937	-0.41093	-0.00016229	-0.012084	-4.7724E-06	-0.42301	-0.00016706	395.2643110936359	13.053	0.052156	13.598	13.561	13.613	0.54443					11	7	2	0	0	0	0.81896	1	4011	4011		0	0	1	69586	+		264	24892	190	191	250	250					0.18576048827571867
AARRRRLRK	9	Unmodified	_AARRRRLRK_					0	0	0			REV__ENST00000451493.5_1_13:36920782-36920917:-|nuORF	REV__ENST00000451493.5_1_13:36920782-36920917:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	394.930401	1181.76937	-0.20358	-8.0398E-05	-0.29197	-0.00011531	-0.49554	-0.0001957	395.2642463866498	9.0904	0.20476	9.0904	8.9374	9.1422	0	-0.19114	0.00013442	NaN	0	42	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78303	+		265	24892	190	191							0.18576048827571867
AASAAARGFSL	11	Unmodified	_AASAAARGFSL_					0	0	0		WBP2NL|p.P141S|1|0.33|ENSG00000183066|chr22:42022263-42022263|C/T|missense_variant	WBP2NL|p.P141S|1|0.33|ENSG00000183066|chr22:42022263-42022263|C/T|missense_variant	WBP2NL|p.P141S|1|0.33|ENSG00000183066|chr22:42022263-42022263|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	511.98834228515625	2	511.274898	1020.53524	-1.1722	-0.0005993	0.37028	0.00018931	-0.8019	-0.00040999	511.27491852195345	34.025	0.25311	34.778	34.651	34.904	0.75225					6	4	2	0	0	0	0.78118	1	12259	12259		7.1017	2.7725	1	2550200			266	30157	191	192	251	251					0.025796881577207387
AASAAELQQQ	10	Unmodified	_AASAAELQQQ_					0	0	0			REV__ZNF76|p.E394K|1|0.48|ENSG00000065029|chr6:35292895-35292895|G/A|missense_variant	REV__ZNF76|p.E394K|1|0.48|ENSG00000065029|chr6:35292895-35292895|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	508.6873474121094	2	508.753995	1015.49344	-0.26082	-0.00013269	-1.1331	-0.00057649	-1.3939	-0.00070918	508.7531986240761	71.375	0.45782	71.375	71.108	71.565	0					14	8	2	0	0	0	0.51963	1	25848	25848		26.884	8.7487	1	1909500	+		267	16487	192	193	252	252					-0.0136891232148173
AASAAELQQQ	10	Unmodified	_AASAAELQQQ_					0	0	0			REV__ZNF76|p.E394K|1|0.48|ENSG00000065029|chr6:35292895-35292895|G/A|missense_variant	REV__ZNF76|p.E394K|1|0.48|ENSG00000065029|chr6:35292895-35292895|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9800109863281	2	508.753995	1015.49344	-0.72677	-0.00036975	0.089034	4.5296E-05	-0.63774	-0.00032445	508.75394593518206	70.576	0.35379	71.31	71.099	71.453	0.73421					12	6	2	0	0	0	0.90853	1	26700	26700		15.847	1.2655	1	2420100	+		268	16487	192	193	253	253					-0.0136891232148173
AASAAPPLR	9	Unmodified	_AASAAPPLR_					0	0	0		ENST00000488080.5_1_2:175711684-175870060:-|nuORF	ENST00000488080.5_1_2:175711684-175870060:-|nuORF	ENST00000488080.5_1_2:175711684-175870060:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	427.6480712890625	2	427.248152	852.481751	-0.30658	-0.00013098	0.091418	3.9058E-05	-0.21516	-9.1927E-05	427.2481886538368	26.986	0.35891	27.646	27.517	27.876	0.65992					11	6	2	0	0	0	0.53748	1	9212	9212		30.637	0	1	2317300			269	12609	193	194	254	254					0.0496093544585392
AASAAQREL	9	Unmodified	_AASAAQREL_					0	0	0		nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	MSMS	A375_MHC_IP_R2	2	458.6840515136719	2	458.745973	915.477394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.007	1	59.754	59.254	60.254	0.74714								0	0	0	0.1521	1	22328	22328		18.135	0	1				270	4857	194	195	255	255					0.016274262322895083
AASAARPPL	9	Unmodified	_AASAARPPL_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	MULTI-SECPEP	A375_MHC_IP_R1	1	427.6477966308594	2	427.248152	852.481751	-0.26579	-0.00011356	-0.096481	-4.1221E-05	-0.36227	-0.00015478	427.24805581252065	27.659	0.40426	27.659	27.482	27.887	0					12	7	2	0	0	0	0.20567	1	8435	8435		37.974	0	1	2767300	+		271	20216	195	196	256	256					0.049609354458425514
AASACELCMM	10	Unmodified	_AASACELCMM_					0	0	0			REV__ENSG00000183018|ENST00000329078|SPNS2	REV__ENSG00000183018|ENST00000329078|SPNS2	MULTI-MSMS	A375_MHC_IP_R2	2	516.09765625	2	515.197241	1028.37993	-1.1173	-0.00057562	-0.204	-0.0001051	-1.3213	-0.00068072	515.6988639640488	34.166	0.55912	34.918	34.702	35.262	0.75225					28	10	3	0	0	0	0.71118	1	12311	12311		7.2892	0	1	9517400	+		272	21726	196	197	257	257					-0.1331250634641492
AASAIIKNK	9	Unmodified	_AASAIIKNK_					0	0	0			REV__tr|U7STE9|U7STE9_FUSNUD-3-phosphoglyceratedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01033PE=3SV=1	REV__tr|U7STE9|U7STE9_FUSNUD-3-phosphoglyceratedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01033PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	458.6847839355469	2	458.284734	914.554916	-0.22179	-0.00010164	0.52299	0.00023968	0.30121	0.00013804	458.28487987943316	59.952	0.45827	59.952	59.752	60.21	0					15	8	2	0	0	0	0.047602	1	21593	21593		65.235	4.1451	1	1913000	+		273	28481	197	198	258	258					0.09422064168472843
AASAIIKNK	9	Unmodified	_AASAIIKNK_					0	0	0			REV__tr|U7STE9|U7STE9_FUSNUD-3-phosphoglyceratedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01033PE=3SV=1	REV__tr|U7STE9|U7STE9_FUSNUD-3-phosphoglyceratedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01033PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	458.284734	914.554916	-0.22179	-0.00010164	0.52299	0.00023968	0.30121	0.00013804	458.28487987943316	59.952	0.45827	59.952	59.752	60.21	0	0.14273	0.00024707	NaN	65.235	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1913000	+		274	28481	197	198							0.09422064168472843
AASALIRTL	9	Unmodified	_AASALIRTL_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	A375_MHC_IP_R2	2	458.6840515136719	2	458.284734	914.554916	-0.71266	-0.0003266	-0.059844	-2.7426E-05	-0.7725	-0.00035403	458.28470626277834	58.919	0.55825	59.666	59.438	59.996	0.74714					17	10	2	0	0	0	0.55534	1	22328	22328		26.021	9.0784	1	2062700			275	7927	198	199	259	259					0.09422064168484212
AASALLRP	8	Unmodified	_AASALLRP_					0	0	0			REV__nc|ENSG00000249992|Q8WZ71-2|TMEM158	REV__nc|ENSG00000249992|Q8WZ71-2|TMEM158	MULTI-SECPEP	A375_MHC_IP_R1	1	400.1452331542969	2	399.745245	797.475937	-0.074814	-2.9906E-05	0.38788	0.00015505	0.31306	0.00012515	399.7453293523569	51.702	0.6096	51.702	51.373	51.982	0					19	11	2	0	0	0	0.44468	1	18385	18385		44.407	0	1	2384400	+		276	22839	199	200	260	260					0.06909836934187297
AASALLRP	8	Unmodified	_AASALLRP_					0	0	0			REV__nc|ENSG00000249992|Q8WZ71-2|TMEM158	REV__nc|ENSG00000249992|Q8WZ71-2|TMEM158	MULTI-MSMS	A375_MHC_IP_R2	2	400.1451416015625	2	399.745245	797.475937	-0.16204	-6.4776E-05	0.19026	7.6057E-05	0.02822	1.1281E-05	399.74529757325394	50.733	0.75731	51.488	51.057	51.815	0.75406					22	14	2	0	0	0	0.16381	1	19109	19109		81.613	24.142	1	2918500	+		277	22839	199	200	261	261					0.06909836934187297
AASALLRP	8	Unmodified	_AASALLRP_					0	0	0			REV__nc|ENSG00000249992|Q8WZ71-2|TMEM158	REV__nc|ENSG00000249992|Q8WZ71-2|TMEM158	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	399.745245	797.475937	-0.16204	-6.4776E-05	0.19026	7.6057E-05	0.02822	1.1281E-05	399.74529757325394	50.733	0.75731	51.488	51.057	51.815	0.75406	-0.10709	-7.7437E-05	NaN	81.613	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2918500	+		278	22839	199	200							0.06909836934187297
AASALPAL	8	Unmodified	_AASALPAL_					0	0	0		ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135660-185136437:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	713.8170776367188	1	713.419217	712.41194	-0.52277	-0.00037296	-0.12924	-9.22E-05	-0.65201	-0.00046516	713.4190390460731	77.869	0.61395	77.869	77.537	78.15	0					16	11	2	0	0	0	0.24409	1	28397	28397		63.563	7.0216	1	2321600			279	7879	200	201	262	262					0.04423056777216061
AASALPAL	8	Unmodified	_AASALPAL_					0	0	0		ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135660-185136437:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	713.419217	712.41194	-0.75118	-0.00053591	0.13222	9.4332E-05	-0.61895	-0.00044157	713.419237878207	76.989	0.55466	77.732	77.404	77.958	0.74293	-0.06853	5.7017E-05	NaN	63.563	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2713700			280	7879	200	201							0.04423056777216061
AASCCTMTF	9	Unmodified	_AASCCTMTF_					0	0	0		ENST00000567934.5_1_16:65105947-65106067:-|nuORF	ENST00000567934.5_1_16:65105947-65106067:-|nuORF	ENST00000567934.5_1_16:65105947-65106067:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	468.68682861328125	2	467.676999	933.339445	-0.57633	-0.00026954	-0.55267	-0.00025847	-1.129	-0.00052801	467.67667050811536	63.438	0.61002	64.178	63.835	64.446	0.74022					24	11	3	0	0	0	0.71977	1	24015	24015		5.2307	0.47466	1	2857100			281	13576	201	202	263	263					-0.1298910467450014
AASEGLVTGV	10	Unmodified	_AASEGLVTGV_					0	0	0			REV__ENSG00000150627|ENST00000508596|WDR17	REV__ENSG00000150627|ENST00000508596|WDR17	MULTI-SECPEP	A375_MHC_IP_R1	1	452.642822265625	2	452.242732	902.470912	-0.19138	-8.655E-05	0.15824	7.1562E-05	-0.033143	-1.4989E-05	452.2427292593015	43.874	0.71369	43.874	43.451	44.165	0					17	13	2	0	0	0	0.61429	1	15319	15319		18.146	0	1	1891300	+		282	19717	202	203	264	264					0.0157748828091826
AASELFSSDE	10	Unmodified	_AASELFSSDE_					0	0	0			REV__NINL|p.S89F|1|0.39|ENSG00000101004|chr20:25517764-25517764|G/A|missense_variant	REV__NINL|p.S89F|1|0.39|ENSG00000101004|chr20:25517764-25517764|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	1056.1373291015625	1	1055.45276	1054.44548	0.080683	8.5157E-05	-0.48068	-0.00050734	-0.4	-0.00042218	1055.4519462296046	62.901	0.70741	63.643	63.282	63.989	0.74263					26	13	3	0	0	0	0.87163	1	23780	23780		19.257	19.257	1	3711400	+		283	27604	203	204	265	265					-0.07956031032176725
AASERLAAM	9	Oxidation (M)	_AASERLAAM(Oxidation (M))_		AASERLAAM(1)		AASERLAAM(110)	0	0	1		NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant;ENSG00000180530|ENST00000318948|NRIP1	NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant	NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	468.6342468261719	2	468.234384	934.454216	0.0017853	8.3592E-07	-0.16596	-7.7708E-05	-0.16417	-7.6872E-05	468.23447414833424	21.802	0.81272	21.802	21.555	22.368	0					22	15	2	0	0	0	0.0094639	1	5780	5780		106.94	54.672	1	2071600			284	8302	204	205	266	266		400			-0.015633358766990568
AASERLQL	8	Unmodified	_AASERLQL_					0	0	0		ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	MULTI-MSMS	A375_MHC_IP_R1	1	444.6510009765625	2	444.250892	886.48723	0.31187	0.00013855	-0.38311	-0.0001702	-0.071236	-3.1647E-05	444.2506565924693	38.913	0.86228	38.913	38.679	39.541	0					29	16	3	0	0	0	0.13337	1	13233	13233		88.954	10.97	1	15991000			285	1967	205	206	267	267					0.03944614237661881
AASERLQL	8	Unmodified	_AASERLQL_					0	0	0		ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	MULTI-SECPEP	A375_MHC_IP_R2	2	443.994140625	2	444.250892	886.48723	-0.65661	-0.0002917	0.22735	0.000101	-0.42925	-0.0001907	444.2509528859504	37.998	0.86797	38.772	38.483	39.351	0.77451					40	16	4	0	0	0	0.1789	1	13929	13929		99.799	21.65	1	13304000			286	1967	205	206	268	268					0.03944614237661881
AASERLSF	8	Unmodified	_AASERLSF_					0	0	0		ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-4|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;nc|ENSG00000124006|O75147-1|OBSL1	ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-1|OBSL1	ENSG00000124006|ENST00000404537|OBSL1	MULTI-MSMS	A375_MHC_IP_R1	1	441.2895202636719	2	440.729792	879.445031	-0.43948	-0.00019369	0.21837	9.6241E-05	-0.22111	-9.7451E-05	440.7298243713815	41.549	0.81591	41.549	41.266	42.082	0					34	15	3	0	0	0	0.16498	1	14404	14404		79.596	33.575	1	14726000			287	3867;14575	206	207	269	269					0.000486388292756601
AASERLSF	8	Unmodified	_AASERLSF_					0	0	0		ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-4|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;nc|ENSG00000124006|O75147-1|OBSL1	ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-1|OBSL1	ENSG00000124006|ENST00000404537|OBSL1	MULTI-MSMS	A375_MHC_IP_R2	2	441.1296081542969	2	440.729792	879.445031	-0.50735	-0.0002236	0.26667	0.00011753	-0.24068	-0.00010607	440.7298642019156	40.705	0.712	41.479	41.234	41.946	0.77451					30	13	3	0	0	0	0.054387	1	15058	15058		103.35	39.117	1	15365000			288	3867;14575	206	207	270	270					0.000486388292756601
AASFAVKLF	9	Unmodified	_AASFAVKLF_					0	0	0		ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-SECPEP	A375_MHC_IP_R1	1	477.67633056640625	2	477.276378	952.538203	-0.41647	-0.00019877	0.6427	0.00030674	0.22623	0.00010797	477.2766310174196	96.827	0.45619	96.827	96.58	97.036	0					15	8	2	0	0	0	0.56537	1	35602	35602		17.113	3.2068	1	1121100			289	4773	207	208	271	271					0.06003563282513369
AASFAVKLF	9	Unmodified	_AASFAVKLF_					0	0	0		ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-SECPEP	A375_MHC_IP_R2	2	477.67645263671875	2	477.276378	952.538203	-0.45937	-0.00021925	0.58113	0.00027736	0.12176	5.8114E-05	477.27661349965234	95.876	0.45753	96.627	96.398	96.855	0.75045					12	8	2	0	0	0	0.38578	1	36435	36435		34.402	6.2285	1	1490900			290	4773	207	208	272	272					0.06003563282513369
AASFPRIY	8	Unmodified	_AASFPRIY_					0	0	0		ENST00000381475.3_1:147851207-147931919:-|nuORF;ENST00000439332.1_1:144301513-144340676:-|nuORF	ENST00000381475.3_1:147851207-147931919:-|nuORF	ENST00000381475.3_1:147851207-147931919:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	463.1503601074219	2	462.750527	923.486502	-0.24897	-0.00011521	-0.31068	-0.00014377	-0.55965	-0.00025898	462.75043146232287	64.173	0.50623	64.173	63.887	64.393	0					22	9	3	0	0	0	0.23546	1	23222	23222		74.929	30.522	1	2375500			291	11376	208	209	273	273					0.02169819588596056
AASFPRIY	8	Unmodified	_AASFPRIY_					0	0	0		ENST00000381475.3_1:147851207-147931919:-|nuORF;ENST00000439332.1_1:144301513-144340676:-|nuORF	ENST00000381475.3_1:147851207-147931919:-|nuORF	ENST00000381475.3_1:147851207-147931919:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	463.15032958984375	2	462.750527	923.486502	-0.48293	-0.00022348	-0.022943	-1.0617E-05	-0.50587	-0.00023409	462.75043129247166	63.332	0.55842	64.072	63.734	64.292	0.74023					18	10	3	0	0	0	0.51146	1	24013	24013		52.268	23.782	1	1737600			292	11376	208	209	274	274					0.02169819588596056
AASFYQRAL	9	Unmodified	_AASFYQRAL_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	MULTI-SECPEP	A375_MHC_IP_R1	1	514.171630859375	2	513.771991	1025.52943	-0.48924	-0.00025136	0.13969	7.1767E-05	-0.34956	-0.00017959	513.7719647673251	50.746	0.45531	50.746	50.51	50.966	0					19	8	3	0	0	0	0.056023	1	18014	18014		75.761	21.928	1	2169400			293	2860	209	210	275	275					0.01768589646030705
AASFYQRAL	9	Unmodified	_AASFYQRAL_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	MULTI-SECPEP	A375_MHC_IP_R2	2	514.1717529296875	2	513.771991	1025.52943	-0.99818	-0.00051284	0.73432	0.00037727	-0.26386	-0.00013556	513.7722673191884	49.869	0.45895	50.623	50.445	50.904	0.75406					14	8	2	0	0	0	0.04038	1	18761	18761		96.111	27.006	1	1633700			294	2860	209	210	276	276					0.01768589646030705
AASFYYGELQA	11	Unmodified	_AASFYYGELQA_					0	0	0			REV__ENST00000541178.1_1_12:34175516-34175777:+|nuORF	REV__ENST00000541178.1_1_12:34175516-34175777:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	407.153076171875	3	407.192511	1218.5557	-0.29071	-0.00011838	0.53427	0.00021755	0.24356	9.9177E-05	407.1927307932495	38.552	0.46121	38.552	38.319	38.78	0					14	8	2	0	0	0	0.73283	1	13166	13166		2.8433	2.8433	1	8222600	+		295	19134	210	211	277	277					-0.0448318597314028
AASGRGLRP	9	Unmodified	_AASGRGLRP_					0	0	0		nc|ENSG00000205307|Q8TEE9|SAP25;ENSG00000205307|ENST00000622764|SAP25	nc|ENSG00000205307|Q8TEE9|SAP25	nc|ENSG00000205307|Q8TEE9|SAP25	MULTI-SECPEP	A375_MHC_IP_R2	2	442.640869140625	2	442.756675	883.498798	-0.21658	-9.5893E-05	0.23739	0.00010511	0.020811	9.2144E-06	442.756689382513	109.69	1.4261	110.44	110.18	111.61	0.74683					46	27	2	0	0	0	0.75164	1	41387	41387		13.906	4.5586	1	9774000			296	9507	211	212	278	278					0.052388560516646976
AASGRGLRP	9	Unmodified	_AASGRGLRP_					0	0	0		nc|ENSG00000205307|Q8TEE9|SAP25;ENSG00000205307|ENST00000622764|SAP25	nc|ENSG00000205307|Q8TEE9|SAP25	nc|ENSG00000205307|Q8TEE9|SAP25	MULTI-MATCH	A375_MHC_IP_R1	1		2	442.756675	883.498798	0.079864	3.536E-05	0.3188	0.00014115	0.39866	0.00017651	442.7567411411182	110.19	1.1714	110.19	109.83	111	0	-0.1243	3.0405E-05	NaN	13.906	42	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10682000			297	9507	211	212							0.052388560516646976
AASLRKVSM	9	Unmodified	_AASLRKVSM_					0	0	0		nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	nc|ENSG00000082153|Q7L1Q6-2|BZW1	nc|ENSG00000082153|Q7L1Q6-2|BZW1	MULTI-SECPEP	A375_MHC_IP_R1	1	482.1758728027344	2	481.776219	961.537886	-0.58968	-0.00028409	-0.080037	-3.856E-05	-0.66972	-0.00032265	481.7762019489854	24.067	0.55819	24.067	23.889	24.447	0					21	10	3	0	0	0	0.011031	1	6740	6740		140.63	51.679	1	35495000			298	1753	212	213	279	279					0.05557820291016924
AASLRKVSM	9	Unmodified	_AASLRKVSM_					0	0	0		nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	nc|ENSG00000082153|Q7L1Q6-2|BZW1	nc|ENSG00000082153|Q7L1Q6-2|BZW1	MULTI-SECPEP	A375_MHC_IP_R2	2	482.17572021484375	2	481.776219	961.537886	-0.88638	-0.00042704	-0.15194	-7.3201E-05	-1.0383	-0.00050024	481.77618935790247	23.326	0.30227	23.956	23.777	24.079	0.63014					16	5	4	0	0	0	0.053555	1	7474	7474		80.676	20.602	1	15721000			299	1753	212	213	280	280					0.05557820291016924
AASLRQEL	8	Unmodified	_AASLRQEL_					0	0	0		ENST00000486060.1_1_6:31112443-31112875:-|nuORF;ENST00000509552.5_1_6:31112443-31124902:-|nuORF;nc|ENSG00000204536|Q8TD31|CCHCR1;nc|ENSG00000204536|Q8TD31-3|CCHCR1;ENSG00000204536|ENST00000396268|CCHCR1	ENST00000486060.1_1_6:31112443-31112875:-|nuORF	ENST00000486060.1_1_6:31112443-31112875:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	444.6510009765625	2	444.250892	886.48723	-0.038676	-1.7182E-05	-0.19794	-8.7934E-05	-0.23661	-0.00010512	444.2507726363564	33.924	0.50539	33.924	33.698	34.203	0					17	9	2	0	0	0	0.033954	1	11096	11096		107.19	6.8155	1	17833000			300	9454	213	214	281	281					0.03944614237661881
AASLRQEL	8	Unmodified	_AASLRQEL_					0	0	0		ENST00000486060.1_1_6:31112443-31112875:-|nuORF;ENST00000509552.5_1_6:31112443-31124902:-|nuORF;nc|ENSG00000204536|Q8TD31|CCHCR1;nc|ENSG00000204536|Q8TD31-3|CCHCR1;ENSG00000204536|ENST00000396268|CCHCR1	ENST00000486060.1_1_6:31112443-31112875:-|nuORF	ENST00000486060.1_1_6:31112443-31112875:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	444.6505432128906	2	444.250892	886.48723	-0.5232	-0.00023243	-0.012057	-5.3564E-06	-0.53526	-0.00023779	444.25084737439124	33.066	0.86544	33.818	33.584	34.45	0.75225					29	16	3	0	0	0	0.093406	1	11802	11802		96.111	7.2073	1	19238000			301	9454	213	214	282	282					0.03944614237661881
AASLSLGRI	9	Unmodified	_AASLSLGRI_					0	0	0			REV__nc|ENSG00000124067|Q9UP95-4|SLC12A4;REV__nc|ENSG00000124140|Q9H2X9|SLC12A5;REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6	REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-MSMS	A375_MHC_IP_R1	1	444.6688232421875	2	444.269084	886.523616	0.45002	0.00019993	-0.5422	-0.00024088	-0.092186	-4.0955E-05	444.26875947354347	49.079	0.50511	49.079	48.831	49.336	0					14	9	2	0	0	0	0.61998	1	17387	17387		13.906	2.2658	1	1745900	+		302	18273;19196;18268	214	215	283	283					0.07581491134385487
AASLSLGRI	9	Unmodified	_AASLSLGRI_					0	0	0			REV__nc|ENSG00000124067|Q9UP95-4|SLC12A4;REV__nc|ENSG00000124140|Q9H2X9|SLC12A5;REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6	REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-SECPEP	A375_MHC_IP_R2	2	444.6686706542969	2	444.269084	886.523616	-0.28052	-0.00012462	-0.19656	-8.7324E-05	-0.47707	-0.00021195	444.268995845981	48.096	0.45256	48.858	48.632	49.084	0.76128					12	8	2	0	0	0	0.56537	1	18086	18086		22.736	0	1	2614400	+		303	18273;19196;18268	214	215	284	284					0.07581491134385487
AASPFYRGY	9	Unmodified	_AASPFYRGY_					0	0	0		ENSG00000001084|ENST00000650454|GCLC	ENSG00000001084|ENST00000650454|GCLC	ENSG00000001084|ENST00000650454|GCLC	MULTI-MSMS	A375_MHC_IP_R1	1	516.1922607421875	2	516.250892	1030.48723	-0.40583	-0.00020951	-0.062225	-3.2124E-05	-0.46806	-0.00024164	516.2509891520758	47.693	0.55365	47.693	47.467	48.02	0					27	10	3	0	0	0	0.11629	1	16820	16820		47.749	14.304	1	8028300			304	842	215	216	285	285					-0.026793857623488293
AASPFYRGY	9	Unmodified	_AASPFYRGY_					0	0	0		ENSG00000001084|ENST00000650454|GCLC	ENSG00000001084|ENST00000650454|GCLC	ENSG00000001084|ENST00000650454|GCLC	MULTI-MSMS	A375_MHC_IP_R2	2	516.650390625	2	516.250892	1030.48723	-0.56314	-0.00029072	-0.1527	-7.8833E-05	-0.71584	-0.00036955	516.2509617148588	46.979	0.66139	47.741	47.412	48.073	0.76128					30	12	3	0	0	0	0.14922	2	17590	17590;17632		41.84	7.8327	1	8367200			305	842	215	216	286;287	286					-0.026793857623488293
AASPGKSKKKK	11	Unmodified	_AASPGKSKKKK_					0	0	0			REV__nc|ENSG00000111142|P50579-3|METAP2	REV__nc|ENSG00000111142|P50579-3|METAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	565.6267700195312	2	565.356222	1128.69789	-0.62134	-0.00035128	0.49642	0.00028066	-0.12491	-7.0621E-05	565.3563022869365	27.002	0.24925	27.002	26.828	27.078	0					6	4	2	0	0	0	0.99676	1	8126	8126		2.9952	0	1	1781800	+		306	17651	216	217	288	288					0.13869071559702206
AASPGPPPPAS	11	Unmodified	_AASPGPPPPAS_					0	0	0		ENSG00000099822|ENST00000251287|HCN2	ENSG00000099822|ENST00000251287|HCN2	ENSG00000099822|ENST00000251287|HCN2	MSMS	A375_MHC_IP_R2	2	474.6518859863281	2	474.742899	947.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.954	1	42.728	42.228	43.228	0.77451								0	0	0	0.14443	1	15592	15592		24.021	0.87215	1				307	2088	217	218	289	289					-0.004590919992438103
AASPHYQEW	9	Unmodified	_AASPHYQEW_					0	0	0		ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1;SAMD1|p.P333Dfs*27|1|0.12|ENSG00000141858|chr19:14088912-14088913|-/CG|frameshift_variant	ENSG00000141858|ENST00000533683|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	MULTI-MSMS	A375_MHC_IP_R1	1	545.1432495117188	2	544.743431	1087.47231	-0.40478	-0.0002205	-0.23574	-0.00012842	-0.64052	-0.00034892	544.7432644904496	37.28	0.51044	37.28	37.045	37.556	0					24	9	4	0	0	0	0.0018976	1	12545	12545		145.13	101.27	1	13216000			308	5274	218	219	290	290					-0.06792877630323346
AASPHYQEW	9	Unmodified	_AASPHYQEW_					0	0	0		ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1;SAMD1|p.P333Dfs*27|1|0.12|ENSG00000141858|chr19:14088912-14088913|-/CG|frameshift_variant	ENSG00000141858|ENST00000533683|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	MULTI-MSMS	A375_MHC_IP_R2	2	545.1427612304688	2	544.743431	1087.47231	-1.1391	-0.00062051	0.13802	7.5184E-05	-1.0011	-0.00054532	544.7434613326851	36.461	0.5592	37.232	37.005	37.564	0.7709					29	10	4	0	0	0	0.0018976	1	13298	13298		145.13	103.29	1	12994000			309	5274	218	219	291	291					-0.06792877630323346
AASPKSFTL	9	Unmodified	_AASPKSFTL_					0	0	0		nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000171914|ENST00000636159|TLN2	nc|ENSG00000137076|Q9Y490-2|TLN1	MULTI-MSMS	A375_MHC_IP_R1	1	461.6559143066406	2	461.255643	920.496732	-0.11611	-5.3557E-05	0.27639	0.00012749	0.16028	7.393E-05	461.2559331449712	47.693	0.50302	47.693	47.467	47.97	0					15	9	2	0	0	0	0.06083	1	16784	16784		60.074	7.8056	1	2322600			310	4857;7658	219	220	292	292					0.0333038252319966
AASPKSFTL	9	Unmodified	_AASPKSFTL_					0	0	0		nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000171914|ENST00000636159|TLN2	nc|ENSG00000137076|Q9Y490-2|TLN1	MULTI-SECPEP	A375_MHC_IP_R2	2	461.6555480957031	2	461.255643	920.496732	-0.29605	-0.00013656	0.59902	0.0002763	0.30296	0.00013974	461.25604074850844	46.738	0.56049	47.5	47.155	47.715	0.76127					17	10	2	0	0	0	0.27742	1	17565	17565		36.506	10.238	1	1824200			311	4857;7658	219	220	293	293					0.0333038252319966
AASPPRSF	8	Unmodified	_AASPPRSF_					0	0	0			REV__ENST00000377403.6_1_1:9329897-9329960:+|nuORF	REV__ENST00000377403.6_1_1:9329897-9329960:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	416.4307556152344	2	416.719227	831.423902	-0.29775	-0.00012408	-0.12675	-5.2819E-05	-0.4245	-0.0001769	416.71908952138153	37.581	0.41	38.352	38.171	38.581	0.7709					12	7	2	0	0	0	0.93661	1	13858	13858		10.824	4.1008	1	2261700	+		312	24157	220	221	294	294					0.0014467352042402126
AASPVYRRY	9	Unmodified	_AASPVYRRY_					0	0	0		ENSG00000173548|ENST00000308527|SNX33	ENSG00000173548|ENST00000308527|SNX33	ENSG00000173548|ENST00000308527|SNX33	MULTI-MSMS	A375_MHC_IP_R2	2	361.44683837890625	3	361.529569	1081.56688	-0.53263	-0.00019256	-0.10309	-3.727E-05	-0.63572	-0.00022983	361.8638345867725	22.458	0.25584	23.077	22.948	23.204	0.61932					7	4	2	0	0	0	0.70411	1	7133	7133		6.6304	0.39602	1	738300			313	7808	221	222	295	295					0.029356809116507065
AASPVYRRY	9	Unmodified	_AASPVYRRY_					0	0	0		ENSG00000173548|ENST00000308527|SNX33	ENSG00000173548|ENST00000308527|SNX33	ENSG00000173548|ENST00000308527|SNX33	MULTI-SECPEP	A375_MHC_IP_R2	2	361.9294128417969	3	361.529569	1081.56688	-0.47079	-0.0001702	-0.22528	-8.1444E-05	-0.69606	-0.00025165	361.52952131106423	19.345	0.70859	19.948	19.683	20.392	0.60308					30	13	4	0	0	0	0.24548	1	5942	5942		33.445	14.724	1	4967300			314	7808	221	222	296	296					0.029356809116507065
AASPYFRAM	9	Unmodified	_AASPYFRAM_					0	0	0		ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-MSMS	A375_MHC_IP_R1	1	507.1763610839844	2	507.247295	1012.48004	-0.51218	-0.0002598	-0.23427	-0.00011883	-0.74646	-0.00037864	507.24712828797306	52.667	0.91385	52.667	52.387	53.301	0					39	17	4	0	0	0	0.082375	2	18744	18744;18773		53.833	26.949	1	28059000			315	6530	222	223	297;298	297					-0.025704416344069614
AASPYFRAM	9	Unmodified	_AASPYFRAM_					0	0	0		ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-MSMS	A375_MHC_IP_R2	2	507.17626953125	2	507.247295	1012.48004	-1.0513	-0.00053329	0.072316	3.6682E-05	-0.97902	-0.0004966	507.247302223551	51.899	0.91322	52.651	52.372	53.285	0.75225					39	17	4	0	0	0	0.14922	1	19525	19525		41.84	14.956	1	37716000			316	6530	222	223	299	299					-0.025704416344069614
AASPYFRAM	9	Oxidation (M)	_AASPYFRAM(Oxidation (M))_		AASPYFRAM(1)		AASPYFRAM(76)	0	0	1		ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-SECPEP	A375_MHC_IP_R1	1	515.64453125	2	515.244752	1028.47495	-0.41572	-0.0002142	-0.080833	-4.1649E-05	-0.49655	-0.00025585	515.2446980412269	35.192	0.61039	35.192	34.963	35.573	0					22	11	2	0	0	0	0.087712	1	11707	11707		75.761	43.455	1	37399000			317	6530	222	224	300	300		348			-0.038147454970157924
AASPYFRAM	9	Oxidation (M)	_AASPYFRAM(Oxidation (M))_		AASPYFRAM(1)		AASPYFRAM(76)	0	0	1		ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-SECPEP	A375_MHC_IP_R1	1	515.6444702148438	2	515.244752	1028.47495	-0.5213	-0.0002686	-0.095036	-4.8967E-05	-0.61633	-0.00031756	515.2446574581666	34.767	0.50638	34.767	34.456	34.963	0					17	9	2	0	0	0	0.087712	1	11450	11450		75.761	75.761	1	37282000			318	6530	222	224	301	301		348			-0.038147454970157924
AASPYFRAM	9	Oxidation (M)	_AASPYFRAM(Oxidation (M))_		AASPYFRAM(1)		AASPYFRAM(63)	0	0	1		ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-SECPEP	A375_MHC_IP_R1	1	515.1344604492188	2	515.244752	1028.47495	-0.52677	-0.00027141	0.3664	0.00018879	-0.16037	-8.2628E-05	515.2449330012442	37.721	3.4064	37.721	36.745	40.151	0					99	66	3	0	0	0	0.10103	1	12647	12647		62.573	30.267	1	8583900			319	6530	222	224	302	302		348			-0.038147454970157924
AASPYFRAM	9	Oxidation (M)	_AASPYFRAM(Oxidation (M))_		AASPYFRAM(1)		AASPYFRAM(93)	0	0	1		ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-SECPEP	A375_MHC_IP_R2	2	515.6442260742188	2	515.244752	1028.47495	-0.98357	-0.00050678	0.35606	0.00018346	-0.62751	-0.00032332	515.2447184082652	34.481	0.761	35.233	35.006	35.767	0.75225					46	14	6	0	0	0	0.046478	1	12468	12468		92.653	60.348	1	40872000			320	6530	222	224	303	303		348			-0.038147454970157924
AASPYFRAM	9	Oxidation (M)	_AASPYFRAM(Oxidation (M))_		AASPYFRAM(1)		AASPYFRAM(76)	0	0	1		ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-SECPEP	A375_MHC_IP_R2	2	515.6442260742188	2	515.244752	1028.47495	-1.1695	-0.00060256	0.033468	1.7244E-05	-1.136	-0.00058532	515.2447521672459	34.025	0.50734	34.778	34.55	35.057	0.75225					24	9	3	0	0	0	0.087712	1	12215	12215		75.761	43.455	1	43948000			321	6530	222	224	304	304		348			-0.038147454970157924
AASQFHWD	8	Unmodified	_AASQFHWD_					0	0	0			REV__ENST00000427081.2_1_1:53409259-53409544:-|nuORF	REV__ENST00000427081.2_1_1:53409259-53409544:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	482.1868896484375	2	481.211766	960.40898	-0.53054	-0.0002553	0.30723	0.00014784	-0.22331	-0.00010746	481.2118611895475	39.563	1.0665	39.563	39.238	40.304	0					46	20	4	0	0	0	0.77781	1	13408	13408		2.8892	2.8892	1	50541000	+		322	24660	223	225	305	305					-0.07280818347578588
AASSHICEPI	10	Unmodified	_AASSHICEPI_					0	0	0			REV__ENST00000512977.1_1_5:137043266-137071515:-|nuORF	REV__ENST00000512977.1_1_5:137043266-137071515:-|nuORF	MSMS	A375_MHC_IP_R1	1	514.171630859375	2	514.247492	1026.48043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.806	1	50.806	50.306	51.306	0								0	0	0	0.15283	1	18014	18014		11.64	0.52583	1		+		323	25633	224	226	306	306					-0.03175066705216523
AASSIQRVL	9	Unmodified	_AASSIQRVL_					0	0	0		ENSG00000175548|ENST00000308742|ALG10B;ENSG00000139133|ENST00000266483|ALG10	ENSG00000175548|ENST00000308742|ALG10B	ENSG00000175548|ENST00000308742|ALG10B	MULTI-SECPEP	A375_MHC_IP_R1	1	473.17974853515625	2	472.779816	943.545079	-0.45167	-0.00021354	0.16179	7.6489E-05	-0.28989	-0.00013705	472.77985878767083	42.057	0.81044	42.057	41.777	42.587	0					40	15	4	0	0	0	0.03109	1	14535	14535		92.653	28.693	1	54223000			324	5050	225	227	307	307					0.07104876163089102
AASSIQRVL	9	Unmodified	_AASSIQRVL_					0	0	0		ENSG00000175548|ENST00000308742|ALG10B;ENSG00000139133|ENST00000266483|ALG10	ENSG00000175548|ENST00000308742|ALG10B	ENSG00000175548|ENST00000308742|ALG10B	MULTI-SECPEP	A375_MHC_IP_R2	2	473.422119140625	2	472.779816	943.545079	-0.81338	-0.00038455	0.1789	8.4581E-05	-0.63448	-0.00029997	472.77988874678	41.183	0.6583	41.957	41.692	42.35	0.77451					34	12	4	0	0	0	0.11849	1	15220	15220		53.404	9.4222	1	53494000			325	5050	225	227	308	308					0.07104876163089102
AASSRYFPL	9	Unmodified	_AASSRYFPL_					0	0	0			REV__nc|ENSG00000115705|P07202-4|TPO	REV__nc|ENSG00000115705|P07202-4|TPO	MULTI-SECPEP	A375_MHC_IP_R1	1	506.7187805175781	2	506.266542	1010.51853	-0.27891	-0.0001412	-0.49518	-0.0002507	-0.7741	-0.0003919	506.26623920478613	70.917	0.41022	70.917	70.749	71.159	0					10	7	2	0	0	0	0.69504	1	25821	25821		4.3292	0	1	1106600	+		326	17908	226	228	309	309					0.01369187271757255
AASSSAPARQ	10	Unmodified	_AASSSAPARQ_					0	0	0		ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	MSMS	A375_MHC_IP_R2	2	473.179443359375	2	473.241055	944.467557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.106	1	41.88	41.38	42.38	0.77451								0	0	0	0.14862	1	15242	15242		20.454	4.6064	1				327	3141	227	229	310	310					-0.006897617731056016
AASSVRVTF	9	Unmodified	_AASSVRVTF_					0	0	0		ENST00000559997.5_1_15:89448698-89456595:-|nuORF;ENST00000558352.5_1_15:89449802-89456595:-|nuORF;nc|ENSG00000140545|Q08431-3|MFGE8;nc|ENSG00000140545|Q08431-4|MFGE8;ENSG00000140545|ENST00000268150|MFGE8	ENST00000559997.5_1_15:89448698-89456595:-|nuORF	ENST00000559997.5_1_15:89448698-89456595:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	469.6586608886719	2	469.258717	936.50288	-0.17745	-8.3269E-05	-0.2373	-0.00011135	-0.41475	-0.00019462	469.2585756996352	45.966	1.0115	45.966	45.183	46.195	0					26	19	2	0	0	0	0.02331	1	16083	16083		80.676	25.902	1	4092800			328	5167	228	230	311	311					0.032089007547028814
AASSVRVTF	9	Unmodified	_AASSVRVTF_					0	0	0		ENST00000559997.5_1_15:89448698-89456595:-|nuORF;ENST00000558352.5_1_15:89449802-89456595:-|nuORF;nc|ENSG00000140545|Q08431-3|MFGE8;nc|ENSG00000140545|Q08431-4|MFGE8;ENSG00000140545|ENST00000268150|MFGE8	ENST00000559997.5_1_15:89448698-89456595:-|nuORF	ENST00000559997.5_1_15:89448698-89456595:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	469.658447265625	2	469.258717	936.50288	-0.72159	-0.00033861	0.12956	6.0799E-05	-0.59203	-0.00027781	469.25872659864996	44.989	0.50945	45.758	45.492	46.001	0.7691					17	9	2	0	0	0	0.026372	1	16825	16825		78.06	32.04	1	3318000			329	5167	228	230	312	312					0.032089007547028814
AASSYAELL	9	Unmodified	_AASSYAELL_					0	0	0			REV__ENSG00000119927|ENST00000348367|GPAM	REV__ENSG00000119927|ENST00000348367|GPAM	MULTI-MSMS	A375_MHC_IP_R2	2	462.6874084472656	2	462.737283	923.460012	-0.6189	-0.00028639	0.2475	0.00011453	-0.3714	-0.00017186	462.7373273826714	55.574	0.71133	56.325	56.034	56.745	0.75075					17	13	2	0	0	0	0.55818	1	21121	21121		16.942	1.0951	1	1254100	+		330	18104	229	231	313	313					-0.0047791409338060475
AASTLIGATI	10	Unmodified	_AASTLIGATI_					0	0	0			REV__ENSG00000166822|ENST00000561878|TMEM170A	REV__ENSG00000166822|ENST00000561878|TMEM170A	MULTI-MSMS	A375_MHC_IP_R2	2	459.6683654785156	2	459.26875	916.522947	-0.1953	-8.9695E-05	0.71992	0.00033064	0.52462	0.00024094	459.2687023713951	46.827	0.66061	47.588	47.258	47.919	0.76128					27	12	3	0	0	0	0.11068	1	17516	17516		61.357	0	1	12875000	+		331	20703	230	232	314	314					0.06134651694674176
AASTLIGATI	10	Unmodified	_AASTLIGATI_					0	0	0			REV__ENSG00000166822|ENST00000561878|TMEM170A	REV__ENSG00000166822|ENST00000561878|TMEM170A	MULTI-MATCH	A375_MHC_IP_R1	1		2	459.26875	916.522947	-0.098188	-4.5095E-05	1.0778	0.00049498	0.97958	0.00044989	459.26867685999366	47.698	0.80655	47.698	47.416	48.223	0	0.055303	0.00018176	NaN	61.357	38	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9420400	+		332	20703	230	232							0.06134651694674176
AASTLIGATI	10	Unmodified	_AASTLIGATI_					0	0	0			REV__ENSG00000166822|ENST00000561878|TMEM170A	REV__ENSG00000166822|ENST00000561878|TMEM170A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	459.26875	916.522947	-0.1953	-8.9695E-05	0.71992	0.00033064	0.52462	0.00024094	459.2687023713951	46.827	0.66061	47.588	47.258	47.919	0.76128	-0.055303	-0.00014693	NaN	61.357	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12875000	+		333	20703	230	232							0.06134651694674176
AASVLHVQ	8	Unmodified	_AASVLHVQ_					0	0	0			REV__ENST00000600751.6_2_19:6953206-6957198:-|nuORF	REV__ENST00000600751.6_2_19:6953206-6957198:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	412.5997314453125	2	412.734877	823.455202	-0.22131	-9.1342E-05	0.36454	0.00015046	0.14323	5.9117E-05	412.73494896095775	35.42	0.3529	36.183	35.98	36.333	0.76338					10	6	2	0	0	0	0.94587	1	12808	12808		6.2058	0	1	939200	+		334	26502	231	233	315	315					0.036412465545254236
AASVPLRPL	9	Unmodified	_AASVPLRPL_					0	0	0			REV__ENST00000529364.1_1_11:67811117-67814938:+|nuORF	REV__ENST00000529364.1_1_11:67811117-67814938:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	462.6874084472656	2	462.287277	922.560001	-0.6841	-0.00031625	3.1648	0.001463	2.4807	0.0011468	462.28873744713377	55.931	0.50989	56.681	56.438	56.948	0.75015					20	9	3	0	0	0	0.60917	1	21121	21121		19.257	0	1	2068400	+		335	25820	232	234	316	316					0.09562368031083679
AASVRPVL	8	Unmodified	_AASVRPVL_					0	0	0		ENSG00000215305|ENST00000380445|VPS16;nc|ENSG00000215305|Q9H269-2|VPS16	ENSG00000215305|ENST00000380445|VPS16	ENSG00000215305|ENST00000380445|VPS16	MULTI-SECPEP	A375_MHC_IP_R1	1	407.153076171875	2	406.75307	811.491587	0.048356	1.9669E-05	0.2848	0.00011584	0.33315	0.00013551	406.75313074182014	38.827	0.76309	38.827	38.475	39.238	0					32	14	3	0	0	0	0.10446	1	13166	13166		100.37	22.387	1	21752000			336	9643	233	235	317	317					0.07830123451230975
AASVRPVL	8	Unmodified	_AASVRPVL_					0	0	0		ENSG00000215305|ENST00000380445|VPS16;nc|ENSG00000215305|Q9H269-2|VPS16	ENSG00000215305|ENST00000380445|VPS16	ENSG00000215305|ENST00000380445|VPS16	MULTI-MSMS	A375_MHC_IP_R2	2	407.926513671875	2	406.75307	811.491587	-0.16381	-6.6632E-05	-0.002156	-8.7696E-07	-0.16597	-6.7509E-05	406.75302478454375	37.836	0.56441	38.611	38.382	38.946	0.77451					27	10	3	0	0	0	0.57209	1	13913	13913		46.021	13.715	1	24853000			337	9643	233	235	318	318					0.07830123451230975
AASVTCAV	8	Unmodified	_AASVTCAV_					0	0	0			REV__SSTR3|p.R161C|1|0.27|ENSG00000278195|chr22:37207323-37207323|G/A|missense_variant	REV__SSTR3|p.R161C|1|0.27|ENSG00000278195|chr22:37207323-37207323|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	361.9607238769531	2	361.181089	720.347625	-0.21794	-7.8715E-05	-0.090887	-3.2827E-05	-0.30883	-0.00011154	361.18098743888777	27.219	1.0181	27.897	27.484	28.502	0.67857					23	19	2	0	0	0	0.97144	1	9482	9482		14.582	4.3983	1	1425800	+		338	28050	234	236	319	319					-0.02373466371216182
AASVVCREL	9	Unmodified	_AASVVCREL_					0	0	0		ENSG00000115318|ENST00000264094|LOXL3;chr2:74536471-74550185|372|30.13|0.69|5.44|-|ENST00000409986|LOXL3,LOXL3;nc|ENSG00000115318|P58215-3|LOXL3	ENSG00000115318|ENST00000264094|LOXL3	ENSG00000115318|ENST00000264094|LOXL3	MULTI-SECPEP	A375_MHC_IP_R1	1	474.6522521972656	2	474.252577	946.490601	-0.28251	-0.00013398	-0.15347	-7.2783E-05	-0.43597	-0.00020676	474.25269925229725	42.681	0.91411	42.681	42.386	43.3	0					24	17	2	0	0	0	0.4465	1	14852	14852		31.268	7.2478	1	1787100			339	3301	235	237	320	320					0.015215410200198676
AASWRGVTD	9	Unmodified	_AASWRGVTD_					0	0	0		ENST00000356208.9_1_20:55983123-55983324:+|nuORF	ENST00000356208.9_1_20:55983123-55983324:+|nuORF	ENST00000356208.9_1_20:55983123-55983324:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	482.17572021484375	2	481.738148	961.461744	-0.87239	-0.00042027	-0.16768	-8.0777E-05	-1.0401	-0.00050104	481.7381766498368	23.424	0.252	24.054	23.928	24.18	0.63014					7	4	2	0	0	0	0.68216	1	7474	7474		8.5933	0	1	3143300			340	10961	236	238	321	321					-0.020528602847662114
AASYGRIY	8	Unmodified	_AASYGRIY_					0	0	0		ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3;ENST00000498057.1_1_3:48675640-48678188:-|nuORF;ENST00000461362.5_1_3:48675640-48681145:-|nuORF	ENSG00000008300|ENST00000164024|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	MULTI-MSMS	A375_MHC_IP_R1	1	450.68157958984375	2	450.732335	899.450116	-0.16469	-7.423E-05	0.71486	0.00032221	0.55017	0.00024798	450.732196199153	34.129	0.50517	34.129	33.748	34.253	0					14	9	2	0	0	0	0.57209	1	11202	11202		46.021	15.796	1	2635600			341	957	237	239	322	322					-0.003630573080954491
AASYGRIY	8	Unmodified	_AASYGRIY_					0	0	0		ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3;ENST00000498057.1_1_3:48675640-48678188:-|nuORF;ENST00000461362.5_1_3:48675640-48681145:-|nuORF	ENSG00000008300|ENST00000164024|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	MULTI-SECPEP	A375_MHC_IP_R2	2	450.99749755859375	2	450.732335	899.450116	-0.62793	-0.00028303	0.40362	0.00018192	-0.22431	-0.00010111	450.7322861227831	33.398	0.35597	34.15	33.992	34.348	0.75225					10	6	2	0	0	0	0.50167	1	11934	11934		50.855	23.971	1	2414800			342	957	237	239	323	323					-0.003630573080954491
AATCKLRTW	9	Unmodified	_AATCKLRTW_					0	0	0			REV__ENST00000397477.2_1_22:32665849-32666506:+|nuORF	REV__ENST00000397477.2_1_22:32665849-32666506:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	524.6946411132812	2	525.281669	1048.54878	-0.32378	-0.00017007	-3.7246	-0.0019564	-4.0483	-0.0021265	525.2801439379741	43.577	0.8084	44.349	43.775	44.583	0.7724					15	10	2	0	0	0	0.64808	1	16097	16097		11.64	0.81637	1	3047500	+		343	24357	238	240	324	324					0.026452226652963873
AATDVRRVW	9	Unmodified	_AATDVRRVW_					0	0	0		ENSG00000153975|ENST00000368576|ZUP1	ENSG00000153975|ENST00000368576|ZUP1	ENSG00000153975|ENST00000368576|ZUP1	MULTI-SECPEP	A375_MHC_IP_R1	1	359.29754638671875	3	358.533202	1072.57778	0.023329	8.3642E-06	-0.077486	-2.7781E-05	-0.054157	-1.9417E-05	358.5331765088591	34.518	0.45623	34.518	34.303	34.759	0					14	8	3	0	0	0	0.60917	1	11357	11357		9.544	0	1	2477300			344	6052	239	241	325	325					0.044390832859335205
AATEKLLEY	9	Unmodified	_AATEKLLEY_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000570986.1_1_17:4457199-4458649:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-SECPEP	A375_MHC_IP_R1	1	519.6792602539062	2	519.279315	1036.54408	-0.69596	-0.0003614	-0.10309	-5.3532E-05	-0.79905	-0.00041493	519.2791984762936	53.022	0.40322	53.022	52.847	53.25	0					14	7	2	0	0	0	0.14554	1	18892	18892		65.474	47.327	1	4644600			345	4400	240	242	326	326					0.027266170035318282
AATEKLLEY	9	Unmodified	_AATEKLLEY_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000570986.1_1_17:4457199-4458649:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-SECPEP	A375_MHC_IP_R2	2	519.6659545898438	2	519.279315	1036.54408	-1.0688	-0.00055498	0.48764	0.00025322	-0.58111	-0.00030176	519.2793839801898	52.288	0.60747	53.04	52.729	53.336	0.75225					20	11	3	0	0	0	0.11849	1	19692	19692		61.602	32.52	1	4206200			346	4400	240	242	327	327					0.027266170035318282
AATERIIL	8	Unmodified	_AATERIIL_					0	0	0		nc|ENSG00000141084|Q6VN20-3|RANBP10;ENSG00000141084|ENST00000317506|RANBP10;ENST00000602506.5_1_16:67760333-67793575:-|nuORF;nc|ENSG00000141084|Q6VN20-2|RANBP10	nc|ENSG00000141084|Q6VN20-3|RANBP10	nc|ENSG00000141084|Q6VN20-3|RANBP10	MULTI-SECPEP	A375_MHC_IP_R2	2	443.62579345703125	2	443.77146	885.528367	-0.50866	-0.00022573	0.23263	0.00010323	-0.27603	-0.0001225	443.77151221710807	62.3	0.30606	63.042	62.874	63.18	0.74263					10	5	2	0	0	0	0.55873	1	23591	23591		41.84	3.6641	1	1114100			347	5213	241	243	328	328					0.08102375277155716
AATERIIL	8	Unmodified	_AATERIIL_					0	0	0		nc|ENSG00000141084|Q6VN20-3|RANBP10;ENSG00000141084|ENST00000317506|RANBP10;ENST00000602506.5_1_16:67760333-67793575:-|nuORF;nc|ENSG00000141084|Q6VN20-2|RANBP10	nc|ENSG00000141084|Q6VN20-3|RANBP10	nc|ENSG00000141084|Q6VN20-3|RANBP10	MULTI-MATCH	A375_MHC_IP_R1	1		2	443.77146	885.528367	-0.015557	-6.9037E-06	-0.26471	-0.00011747	-0.28027	-0.00012437	443.77125105044996	63.3	0.35625	63.3	63.121	63.477	0	0.12854	-0.0001393	NaN	34.402	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	781140			348	5213	241	243							0.08102375277155716
AATEVRMRCK	10	Unmodified	_AATEVRMRCK_					0	0	0			REV__ENST00000497393.1_1_3:120469390-120469879:+|nuORF	REV__ENST00000497393.1_1_3:120469390-120469879:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	388.626708984375	3	388.87072	1163.59033	0.19618	7.6288E-05	4.1674	0.0016206	4.3635	0.0016969	389.2078617660335	34.044	0.25507	34.044	33.848	34.103	0					6	4	2	0	0	0	0.83355	1	11201	11201		4.7159	0.83959	1	565600	+		349	19847	242	244	329	329					0.01508035362303417
AATEVSKEL	9	Unmodified	_AATEVSKEL_					0	0	0		AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;ENSG00000131016|ENST00000402676|AKAP12	AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant	AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	474.655517578125	2	474.25584	946.497126	-0.53805	-0.00025517	-0.087499	-4.1497E-05	-0.62555	-0.00029667	474.25573910563077	28.298	0.90852	28.298	27.887	28.795	0					40	17	3	0	0	0	0.0066517	2	8682	8682;8801		165.72	55.046	1	24459000			350	97	243	245	330;331	330					0.021737574523854164
AATEVSKEL	9	Unmodified	_AATEVSKEL_					0	0	0		AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;ENSG00000131016|ENST00000402676|AKAP12	AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant	AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	474.6556396484375	2	474.25584	946.497126	-0.52932	-0.00025103	0.015569	7.3835E-06	-0.51375	-0.00024365	474.25581033164747	27.611	0.8116	28.29	27.945	28.757	0.67857					32	15	3	0	0	0	0.0066517	2	9453	9453;9578		165.72	65.965	1	26930000			351	97	243	245	332;333	332					0.021737574523854164
AATFARRLL	9	Unmodified	_AATFARRLL_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	A375_MHC_IP_R2	2	510.2110595703125	2	509.811451	1017.60835	-0.82942	-0.00042285	0.38436	0.00019595	-0.44506	-0.0002269	509.8113559700945	45.187	0.50846	45.953	45.642	46.15	0.76518					15	9	2	0	0	0	0.71541	1	16879	16879		3.9444	1.8846	1	3682100			352	3768	244	246	334	334					0.10024861670990504
AATITPHLLCQ	11	Unmodified	_AATITPHLLCQ_					0	0	0			REV__ENST00000556833.1_1_14:21923192-21923264:-|nuORF	REV__ENST00000556833.1_1_14:21923192-21923264:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	389.9561767578125	3	389.877869	1166.61178	0.093566	3.6479E-05	-1.104	-0.00043041	-1.0104	-0.00039393	389.8775196071513	27.508	0.40376	27.508	27.28	27.684	0					18	7	3	0	0	0	0.9754	1	8263	8263		2.2527	0	1	4953800	+		353	26114	245	247	335	335					0.035137436626882845
AATITPHLLCQ	11	Unmodified	_AATITPHLLCQ_					0	0	0			REV__ENST00000556833.1_1_14:21923192-21923264:-|nuORF	REV__ENST00000556833.1_1_14:21923192-21923264:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	389.9560241699219	3	389.877869	1166.61178	-0.38046	-0.00014833	-0.57428	-0.0002239	-0.95474	-0.00037223	389.87765574344206	26.893	1.274	27.553	26.857	28.131	0.65992					52	24	4	0	0	0	0.9754	1	8997	8997		6.6235	1.2207	1	5132700	+		354	26114	245	247	336	336					0.035137436626882845
AATKHSLPP	9	Unmodified	_AATKHSLPP_					0	0	0			REV__ENST00000510284.1_1_4:185767530-185771739:-|nuORF	REV__ENST00000510284.1_1_4:185767530-185771739:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	460.6349792480469	2	461.261259	920.507966	-0.51791	-0.00023889	0.10425	4.8085E-05	-0.41367	-0.00019081	461.2612689267135	40.18	0.65863	40.955	40.524	41.183	0.77451					16	12	2	0	0	0	0.76827	1	14800	14800		6.7232	0	1	1965800	+		355	25599	246	248	337	337					0.04453204617323081
AATNALLNSL	10	Unmodified	_AATNALLNSL_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1;KPNB1|p.Q741Rfs*18|1|0.44|ENSG00000108424|chr17:47678164-47678164|A/-|frameshift_variant	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-SECPEP	A375_MHC_IP_R1	1	493.668701171875	2	494.277106	986.53966	-0.28235	-0.00013956	-0.38763	-0.0001916	-0.66998	-0.00033116	494.2766101185352	40.62	0.55519	40.62	40.458	41.013	0					15	10	2	0	0	0	0.79457	1	14132	14132		7.1017	0	1	2053900			356	2800	247	249	338	338					0.04585152580614249
AATPARLVT	9	Unmodified	_AATPARLVT_					0	0	0			REV__OR6T1|p.R234Q|1|0.32|ENSG00000181499|chr11:123943138-123943138|C/T|missense_variant	REV__OR6T1|p.R234Q|1|0.32|ENSG00000181499|chr11:123943138-123943138|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	450.66912841796875	2	450.269084	898.523616	-0.29187	-0.00013142	0.029989	1.3503E-05	-0.26188	-0.00011792	450.2690565084939	27.659	0.70647	27.659	27.432	28.138	0					31	13	3	0	0	0	0.10362	1	8407	8407		63.961	0	1	36709000	+		357	21653	248	250	339	339					0.07029491134380805
AATPARLVT	9	Unmodified	_AATPARLVT_					0	0	0			REV__OR6T1|p.R234Q|1|0.32|ENSG00000181499|chr11:123943138-123943138|C/T|missense_variant	REV__OR6T1|p.R234Q|1|0.32|ENSG00000181499|chr11:123943138-123943138|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	450.6690368652344	2	450.269084	898.523616	-0.36923	-0.00016625	0.038944	1.7535E-05	-0.33029	-0.00014872	450.26908797455303	27.038	0.61396	27.717	27.484	28.098	0.67857					33	11	4	0	0	0	0.070665	1	9185	9185		69.105	12.928	1	32709000	+		358	21653	248	250	340	340					0.07029491134380805
AATPAVRTV	9	Unmodified	_AATPAVRTV_					0	0	0		ENSG00000151846|ENST00000281589|PABPC3;ENSG00000070756|ENST00000318607|PABPC1	ENSG00000151846|ENST00000281589|PABPC3	ENSG00000151846|ENST00000281589|PABPC3	MULTI-MSMS	A375_MHC_IP_R1	1	443.6610412597656	2	443.261259	884.507966	-0.39774	-0.0001763	-0.12726	-5.6408E-05	-0.52499	-0.00023271	443.26124844988703	26.398	2.8271	26.398	25.613	28.44	0					123	55	5	0	0	0	0.0090499	1	7799	7799		100.09	37.518	1	795930000			359	5931	249	251	341	341					0.061092046173257586
AATPAVRTV	9	Unmodified	_AATPAVRTV_					0	0	0		ENSG00000151846|ENST00000281589|PABPC3;ENSG00000070756|ENST00000318607|PABPC1	ENSG00000151846|ENST00000281589|PABPC3	ENSG00000151846|ENST00000281589|PABPC3	MULTI-MSMS	A375_MHC_IP_R2	2	443.6607360839844	2	443.261259	884.507966	-0.81149	-0.0003597	0.27501	0.0001219	-0.53648	-0.0002378	443.2613919182863	25.712	1.9867	26.372	26.144	28.131	0.65992					95	38	5	0	0	0	0.0098859	2	8596	8596;8844		117.76	51.304	1	592500000			360	5931	249	251	342;343	342					0.061092046173257586
AATQQFKKEL	10	Unmodified	_AATQQFKKEL_					0	0	0			REV__ENST00000478551.1_1_3:45868846-45870002:-|nuORF	REV__ENST00000478551.1_1_3:45868846-45870002:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	388.9520568847656	3	388.552151	1162.63462	0.047652	1.8515E-05	-0.52126	-0.00020253	-0.4736	-0.00018402	388.5519331839215	36.37	0.45618	36.37	36.033	36.489	0					15	8	3	0	0	0	0.93407	1	12202	12202		2.4348	0	1	2476600	+		361	20418	250	252	344	344					0.059810860518155096
AATQWGRIL	9	Unmodified	_AATQWGRIL_					0	0	0		ENST00000566735.1_1_16:19125342-19127388:+|nuORF;ENSG00000205730|ENST00000381440|ITPRIPL2	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	508.70501708984375	2	508.287808	1014.56106	-0.27135	-0.00013792	-0.076468	-3.8868E-05	-0.34782	-0.00017679	508.28787945620246	71.242	0.61414	71.242	70.902	71.516	0					26	11	3	0	0	0	0.02559	1	25812	25812		78.728	40.754	1	8326800			362	9524	251	253	345	345					0.05436582400000134
AATQWGRIL	9	Unmodified	_AATQWGRIL_					0	0	0		ENST00000566735.1_1_16:19125342-19127388:+|nuORF;ENSG00000205730|ENST00000381440|ITPRIPL2	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	508.6871032714844	2	508.287808	1014.56106	-0.68958	-0.00035051	-0.291	-0.00014791	-0.98058	-0.00049842	508.2875649617361	70.37	0.65936	71.105	70.743	71.402	0.73421					21	12	2	0	0	0	0.011405	1	26646	26646		99.755	57.938	1	8114800			363	9524	251	253	346	346					0.05436582400000134
AATRAGAIGP	10	Unmodified	_AATRAGAIGP_					0	0	0		ENST00000459899.1_1_14:35857513-35858113:-|nuORF	ENST00000459899.1_1_14:35857513-35858113:-|nuORF	ENST00000459899.1_1_14:35857513-35858113:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	443.1506652832031	2	442.751059	883.487565	-0.70228	-0.00031094	0.018248	8.0792E-06	-0.68403	-0.00030286	442.7509690007166	26.577	0.51058	27.237	27.109	27.62	0.65992					11	9	2	0	0	0	0.85226	1	9054	9054		10.074	0	1	2163700			364	12158	252	254	347	347					0.04116033957518539
AATRSQLAL	9	Unmodified	_AATRSQLAL_					0	0	0		ENST00000468293.5_1_7:150707648-150709543:+|nuORF	ENST00000468293.5_1_7:150707648-150709543:+|nuORF	ENST00000468293.5_1_7:150707648-150709543:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	466.17169189453125	2	465.771991	929.529429	-0.45369	-0.00021132	0.097131	4.5241E-05	-0.35656	-0.00016608	465.77192389433657	32.726	0.45491	32.726	32.585	33.04	0					13	8	2	0	0	0	0.38578	1	10654	10654		34.402	8.1336	1	1947400			365	12301	253	255	348	348					0.06184589646022687
AATRSQLAL	9	Unmodified	_AATRSQLAL_					0	0	0		ENST00000468293.5_1_7:150707648-150709543:+|nuORF	ENST00000468293.5_1_7:150707648-150709543:+|nuORF	ENST00000468293.5_1_7:150707648-150709543:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	465.771991	929.529429	-0.66366	-0.00030912	0.47835	0.0002228	-0.18531	-8.6313E-05	465.7721387769208	32.043	0.55693	32.78	32.555	33.112	0.73692	0.027081	0.00024623	NaN	27.629	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2076700			366	12301	253	255							0.06184589646022687
AATSGPRFP	9	Unmodified	_AATSGPRFP_					0	0	0		ENST00000557604.1_1_14:53254560-53258380:-|nuORF	ENST00000557604.1_1_14:53254560-53258380:-|nuORF	ENST00000557604.1_1_14:53254560-53258380:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	452.11627197265625	2	452.237784	902.461016	-0.35885	-0.00016229	0.93558	0.0004231	0.57673	0.00026082	452.23845644886796	39.325	0.96799	40.099	39.607	40.575	0.77451					34	18	3	0	0	0	0.20567	1	14622	14622		46.021	13.715	1	17298000			367	13456	254	256	349	349					0.005883450661826828
AATSQHLL	8	Unmodified	_AATSQHLL_					0	0	0			REV__nc|ENSG00000108846|O15438-3|ABCC3	REV__nc|ENSG00000108846|O15438-3|ABCC3	MULTI-SECPEP	A375_MHC_IP_R1	1	421.1322326660156	2	420.732335	839.450116	0.20991	8.8318E-05	-0.24259	-0.00010207	-0.032678	-1.3749E-05	420.7321532626449	35.885	0.56021	35.885	35.573	36.133	0					17	10	2	0	0	0	0.85124	1	11994	11994		26.341	0	1	2019300	+		368	27167	255	257	350	350					0.023969426919165926
AATSQHLL	8	Unmodified	_AATSQHLL_					0	0	0			REV__nc|ENSG00000108846|O15438-3|ABCC3	REV__nc|ENSG00000108846|O15438-3|ABCC3	MULTI-MATCH	A375_MHC_IP_R2	2		2	420.732335	839.450116	-0.31565	-0.0001328	0.31285	0.00013163	-0.0027952	-1.176E-06	420.7322887294486	34.989	0.50499	35.752	35.525	36.03	0.76338	-0.06653	0.0003481	NaN	26.341	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1611900	+		369	27167	255	257							0.023969426919165926
AATSRTYLY	9	Unmodified	_AATSRTYLY_					0	0	0		ENST00000493657.1_1_1:1244633-1244984:+|nuORF;ENST00000470520.5_1_1:1244480-1246298:+|nuORF;ENSG00000169972|ENST00000379031|PUSL1;ENST00000463758.1_1_1:1244702-1244984:+|nuORF	ENST00000493657.1_1_1:1244633-1244984:+|nuORF	ENST00000493657.1_1_1:1244633-1244984:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	523.6689453125	2	523.269281	1044.52401	-0.78176	-0.00040907	0.043083	2.2544E-05	-0.73868	-0.00038653	523.269243412341	36.619	1.0631	36.619	36.033	37.096	0					48	20	4	0	0	0	0.04699	1	12153	12153		65.474	27.5	1	42991000			370	7459	256	258	351	351					0.0035286606357658457
AATTAILIA	9	Unmodified	_AATTAILIA_					0	0	0		ENSG00000135919|ENST00000409304|SERPINE2;chr2:224001922-224030072|455|26.05|0.76|5.1|-|ENST00000409840|SERPINE2,SERPINE2;nc|ENSG00000135919|P07093|SERPINE2;nc|ENSG00000135919|P07093-3|SERPINE2;ENST00000478966.1_1_2:224840586-224849719:-|nuORF	ENSG00000135919|ENST00000409304|SERPINE2	ENSG00000135919|ENST00000409304|SERPINE2	MULTI-SECPEP	A375_MHC_IP_R2	2	844.9134521484375	1	844.513845	843.506569	-0.63958	-0.00054013	0.26621	0.00022482	-0.37336	-0.00031531	844.5140236620158	83.839	0.56279	84.579	84.305	84.868	0.73962					23	10	3	0	0	0	0.043556	1	31835	31835		67.344	0	1	9168500			371	463	257	259	352	352					0.07855570528579392
AATTVLRQL	9	Unmodified	_AATTVLRQL_					0	0	0		ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	MULTI-MSMS	A375_MHC_IP_R1	1	487.1952819824219	2	486.795466	971.57638	-0.18417	-8.9654E-05	-0.34468	-0.00016779	-0.52885	-0.00025744	486.7952360236154	51.061	0.50794	51.061	50.814	51.322	0					20	9	3	0	0	0	0.0002001	1	18095	18095		206.75	110.46	1	8333500			372	1939	258	260	353	353					0.0894544919716509
AATTVLRQL	9	Unmodified	_AATTVLRQL_					0	0	0		ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	MULTI-MSMS	A375_MHC_IP_R2	2	487.1952819824219	2	486.795466	971.57638	-0.8037	-0.00039124	-0.29568	-0.00014394	-1.0994	-0.00053518	486.79538002975437	50.124	0.56001	50.878	50.599	51.159	0.75406					27	10	4	0	0	0	2.1951E-17	1	18816	18816		240.48	136.74	1	10990000			373	1939	258	260	354	354					0.0894544919716509
AATWMQLEPII	11	Unmodified	_AATWMQLEPII_					0	0	0		ENST00000559367.1_1_4:74034679-74088744:-|nuORF	ENST00000559367.1_1_4:74034679-74088744:-|nuORF	ENST00000559367.1_1_4:74034679-74088744:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	424.9667663574219	3	424.893408	1271.65839	0.045057	1.9145E-05	2.2238	0.00094489	2.2689	0.00096404	424.893507955734	43.842	0.35271	44.611	44.48	44.833	0.7691					8	6	2	0	0	0	0.94168	1	16434	16434		12.228	1.4281	1	860490			374	13479	259	261	355	355					0.03343183493984725
AAVAAEKE	8	Unmodified	_AAVAAEKE_					0	0	0			REV__ENSG00000273274|ENST00000609129|ZBTB8B	REV__ENSG00000273274|ENST00000609129|ZBTB8B	MULTI-SECPEP	A375_MHC_IP_R2	2	393.9396057128906	2	394.711068	787.407583	-0.6344	-0.0002504	0.25325	9.9959E-05	-0.38115	-0.00015045	394.7113293096439	33.886	0.30309	34.639	34.5	34.803	0.75225					7	5	2	0	0	0	0.92215	1	12228	12228		5.7604	0	1	813590	+		375	22950	260	262	356	356					0.005375475636697047
AAVAQEMLTEL	11	Unmodified	_AAVAQEMLTEL_					0	0	0			REV__ENST00000586522.5_1_17:40255624-40263910:-|nuORF	REV__ENST00000586522.5_1_17:40255624-40263910:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	392.3242492675781	3	392.537401	1174.59037	-0.30424	-0.00011942	-1.1764	-0.00046177	-1.4806	-0.0005812	392.53688980209085	50.633	0.50555	51.387	51.209	51.715	0.75406					15	9	2	0	0	0	0.88813	1	19069	19069		15.538	3.3109	1	2214000	+		376	17551	261	263	357	357					0.01006313843299722
AAVDVEGVYKL	11	Unmodified	_AAVDVEGVYKL_					0	0	0		tr|U7SEQ8|U7SEQ8_FUSNUAlkalineshockprotein23OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02325PE=3SV=1	tr|U7SEQ8|U7SEQ8_FUSNUAlkalineshockprotein23OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02325PE=3SV=1	tr|U7SEQ8|U7SEQ8_FUSNUAlkalineshockprotein23OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02325PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	388.94891357421875	3	388.548406	1162.62339	0.31592	0.00012275	1.1583	0.00045007	1.4742	0.00057281	388.5487124314356	35.021	1.0714	35.021	34.81	35.881	0					28	20	2	0	0	0	0.71172	1	11692	11692		24.957	8.6825	1	2818700			377	29386	262	264	358	358					0.04858263957657982
AAVGDMVTV	9	Unmodified	_AAVGDMVTV_					0	0	0		nc|ENSG00000019485|Q9NQV5-2|PRDM11;nc|ENSG00000019485|Q9NQV5|PRDM11;ENSG00000019485|ENST00000683152|PRDM11	nc|ENSG00000019485|Q9NQV5-2|PRDM11	nc|ENSG00000019485|Q9NQV5-2|PRDM11	MULTI-SECPEP	A375_MHC_IP_R2	2	431.2878723144531	2	431.720578	861.426604	-0.082184	-3.548E-05	-0.23751	-0.00010254	-0.3197	-0.00013802	431.7203704840167	43.857	1.6192	44.626	43.873	45.492	0.7691					42	31	2	0	0	0	0.20094	1	16472	16472		28.487	0	1	1280600			378	1052	263	265	359	359					-0.00965239136917262
AAVGGEKRP	9	Unmodified	_AAVGGEKRP_					0	0	0		ENSG00000131899|ENST00000316843|LLGL1	ENSG00000131899|ENST00000316843|LLGL1	ENSG00000131899|ENST00000316843|LLGL1	MULTI-SECPEP	A375_MHC_IP_R1	1	443.15081787109375	2	442.751059	883.487565	-0.19708	-8.7259E-05	-0.87231	-0.00038622	-1.0694	-0.00047348	442.75076952462683	27.239	0.65606	27.239	26.978	27.634	0					16	12	2	0	0	0	0.56537	1	8271	8271		29.082	6.3453	1	2717700			379	4355	264	266	360	360					0.0411603395750717
AAVGVWVSL	9	Unmodified	_AAVGVWVSL_					0	0	0		ENSG00000275591|ENST00000618742|XKR5	ENSG00000275591|ENST00000618742|XKR5	ENSG00000275591|ENST00000618742|XKR5	MULTI-SECPEP	A375_MHC_IP_R2	2	451.6585388183594	2	451.260728	900.506903	-0.89795	-0.00040521	-2.1089	-0.00095165	-3.0068	-0.0013569	451.25893780221816	37.126	0.50621	37.897	37.665	38.171	0.7709					17	9	3	0	0	0	0.3243	1	13581	13581		36.044	0	1	1911100			380	10011	265	267	361	361					0.05266990248424008
AAVKEFDEPN	10	Unmodified	_AAVKEFDEPN_					0	0	0			REV__ENSG00000183741|ENST00000407418|CBX6	REV__ENSG00000183741|ENST00000407418|CBX6	MULTI-SECPEP	A375_MHC_IP_R2	2	560.9727172851562	2	560.269478	1118.5244	-0.54113	-0.00030318	-1.6664	-0.00093362	-2.2075	-0.0012368	560.2667207876317	90.547	0.2026	91.281	91.16	91.362	0.7345					5	3	2	0	0	0	0.64716	1	34409	34409		36.127	10.728	1	413360	+		381	21774	266	268	362	362					-0.03011759007222281
AAVLEEKLFQ	10	Unmodified	_AAVLEEKLFQ_					0	0	0			REV__nc|ENSG00000044115|P35221-2|CTNNA1	REV__nc|ENSG00000044115|P35221-2|CTNNA1	MULTI-MSMS	A375_MHC_IP_R2	2	383.91864013671875	3	383.216768	1146.62847	-0.10401	-3.9859E-05	1.0454	0.00040063	0.94142	0.00036077	383.21706907935277	41.858	1.6292	42.633	41.692	43.321	0.77451					54	31	3	0	0	0	0.67512	2	15520	15520;15538		9.7643	0.52048	1	6013200	+		382	16353	267	269	363;364	363					0.06102567820266813
AAVLVDSV	8	Unmodified	_AAVLVDSV_					0	0	0			REV__ENSG00000157219|ENST00000287907|HTR5A	REV__ENSG00000157219|ENST00000287907|HTR5A	MULTI-SECPEP	A375_MHC_IP_R1	1	387.1374816894531	2	387.223811	772.433069	0.19135	7.4095E-05	0.50499	0.00019555	0.69634	0.00026964	387.22384949649535	34.596	0.35426	34.596	34.405	34.759	0					10	6	2	0	0	0	0.94479	1	11379	11379		13.508	4.9146	1	1247700	+		383	20020	268	270	365	365					0.03775022086097124
AAVPLYRLY	9	Unmodified	_AAVPLYRLY_					0	0	0		ENSG00000166260|ENST00000299335|COX11;ENST00000489116.1_1_6:28415047-28415581:+|nuORF;nc|ENSG00000166260|Q9Y6N1-2|COX11	ENSG00000166260|ENST00000299335|COX11	ENSG00000166260|ENST00000299335|COX11	MULTI-SECPEP	A375_MHC_IP_R1	1	533.708251953125	2	533.30821	1064.60187	-0.50061	-0.00026698	0.042892	2.2875E-05	-0.45772	-0.0002441	533.3080939082283	82.551	0.50699	82.551	82.316	82.823	0					22	9	3	0	0	0	0.47368	1	30181	30181		14.838	7.549	1	4003400			384	7049	269	271	366	366					0.07214923719629951
AAVPLYRLY	9	Unmodified	_AAVPLYRLY_					0	0	0		ENSG00000166260|ENST00000299335|COX11;ENST00000489116.1_1_6:28415047-28415581:+|nuORF;nc|ENSG00000166260|Q9Y6N1-2|COX11	ENSG00000166260|ENST00000299335|COX11	ENSG00000166260|ENST00000299335|COX11	MULTI-MSMS	A375_MHC_IP_R2	2	533.325439453125	2	533.30821	1064.60187	-0.8116	-0.00043283	-0.18941	-0.00010101	-1.001	-0.00053385	533.3080434050252	81.689	0.50566	82.432	82.179	82.684	0.74294					22	9	3	0	0	0	0.69317	1	30973	30973		7.2892	2.96	1	4041300			385	7049	269	271	367	367					0.07214923719629951
AAVQAAEVKVD	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAVQAAEVKVD_					1	0	0		ENSG00000065427|ENST00000302445|KARS1;ENST00000568682.5_2_16:75676732-75681537:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-MSMS	A375_MHC_IP_R1	1	572.2058715820312	2	571.806228	1141.5979	-0.56625	-0.00032379	-0.017926	-1.025E-05	-0.58418	-0.00033404	571.8061911154717	67.158	0.5628	67.158	66.887	67.449	0					23	10	3	0	0	0	0.18689	2	24342	24342;24384		72.276	49.618	1	2979600			386	1382	270	272	368;369	368					0.03276789435244609
AAVRFAVEL	9	Unmodified	_AAVRFAVEL_					0	0	0			REV__ENST00000376377.2_1_6:30711066-30711126:-|nuORF	REV__ENST00000376377.2_1_6:30711066-30711126:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	488.6846008300781	2	488.284734	974.554916	-0.50863	-0.00024836	0.71474	0.000349	0.20611	0.00010064	488.28501499942126	83.886	0.87172	84.625	84.099	84.971	0.73962					32	16	3	0	0	0	0.39388	1	31893	31893		32.305	0	1	3501000	+		387	24143	271	273	370	370					0.06662064168460802
AAVRGGRSWLR	11	Unmodified	_AAVRGGRSWLR_					0	0	0		ENST00000309733.5_1_4:113066558-113107853:+|nuORF	ENST00000309733.5_1_4:113066558-113107853:+|nuORF	ENST00000309733.5_1_4:113066558-113107853:+|nuORF	MSMS	A375_MHC_IP_R1	1	614.7755737304688	2	614.854712	1227.69487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.07	1	122.07	121.57	122.57	0								0	0	0	0.15694	1	45381	45381		16.149	0.30192	1				388	10613	272	274	371	371					0.0901324122553433
AAVRRRWRR	9	Unmodified	_AAVRRRWRR_					0	0	0			REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MSMS	A375_MHC_IP_R1	1	614.1190795898438	2	613.876314	1225.73807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.16	1	122.16	121.66	122.66	0								0	0	0	0.15486	1	45429	45429		8.5933	0.43775	1		+		389	26110	273	275	372	372					0.13423475793479156
AAVRVNDHFY	10	Unmodified	_AAVRVNDHFY_					0	0	0			REV__ENSG00000137040|ENST00000259569|RANBP6	REV__ENSG00000137040|ENST00000259569|RANBP6	MULTI-MSMS	A375_MHC_IP_R1	1	1190.891845703125	1	1191.59053	1190.58326	0.10827	0.00012902	3.4974	0.0041675	3.6057	0.0042965	1191.5954193907967	117.97	0.30334	117.97	117.87	118.17	0					6	4	2	0	0	0	0.70651	1	43421	43421		9.3831	0.78985	1	16436000	+		390	18981	274	276	373	373					-0.004412379222458185
AAVSTRVPT	9	Unmodified	_AAVSTRVPT_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	451.6585693359375	2	451.258717	900.50288	-0.35235	-0.000159	-0.24407	-0.00011014	-0.59642	-0.00026914	451.25870734217887	37.964	0.55987	37.964	37.658	38.218	0					15	10	2	0	0	0	0.38578	1	12859	12859		41.84	3.8656	1	3200600			391	4336	275	277	374	374					0.0486490075469419
AAVTLVTT	8	Unmodified	_AAVTLVTT_					0	0	0		ENST00000372310.7_2_1:44462855-44463143:-|nuORF	ENST00000372310.7_2_1:44462855-44463143:-|nuORF	ENST00000372310.7_2_1:44462855-44463143:-|nuORF	MSMS	A375_MHC_IP_R1	1	388.27703857421875	2	388.231636	774.448719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.758	1	51.758	51.258	52.258	0								0	0	0	0.16876	1	18382	18382		5.7604	0	1				392	11193	276	278	375	375					0.052473086031341154
AAVTLVTT	8	Unmodified	_AAVTLVTT_					0	0	0		ENST00000372310.7_2_1:44462855-44463143:-|nuORF	ENST00000372310.7_2_1:44462855-44463143:-|nuORF	ENST00000372310.7_2_1:44462855-44463143:-|nuORF	MSMS	A375_MHC_IP_R2	2	388.2768859863281	2	388.231636	774.448719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.903	1	51.657	51.157	52.157	0.75406								0	0	0	0.16876	1	19149	19149		5.7604	0	1				393	11193	276	278	376	376					0.052473086031341154
AAVWPYRRL	9	Unmodified	_AAVWPYRRL_					0	0	0		ATP13A1|p.G798Afs*55|1|0.25|ENSG00000105726|chr19:19649883-19649883|C/-|frameshift_variant;ENSG00000105726|ENST00000357324|ATP13A1;ENST00000487364.1_1_19:19771386-19774475:-|nuORF	ATP13A1|p.G798Afs*55|1|0.25|ENSG00000105726|chr19:19649883-19649883|C/-|frameshift_variant	ATP13A1|p.G798Afs*55|1|0.25|ENSG00000105726|chr19:19649883-19649883|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	566.724609375	2	566.324725	1130.6349	-0.22492	-0.00012738	0.10694	6.0564E-05	-0.11798	-6.6814E-05	566.3247674090774	51.548	0.60868	51.548	51.27	51.879	0					37	11	4	0	0	0	0.012712	1	18271	18271		92.822	54.671	1	40009000			394	203	277	279	377	377					0.07480550562308963
AAVWPYRRL	9	Unmodified	_AAVWPYRRL_					0	0	0		ATP13A1|p.G798Afs*55|1|0.25|ENSG00000105726|chr19:19649883-19649883|C/-|frameshift_variant;ENSG00000105726|ENST00000357324|ATP13A1;ENST00000487364.1_1_19:19771386-19774475:-|nuORF	ATP13A1|p.G798Afs*55|1|0.25|ENSG00000105726|chr19:19649883-19649883|C/-|frameshift_variant	ATP13A1|p.G798Afs*55|1|0.25|ENSG00000105726|chr19:19649883-19649883|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	377.6138916015625	3	377.885576	1130.6349	0.49241	0.00018608	-0.041365	-1.5631E-05	0.45105	0.00017044	377.8855827297354	51.55	1.3222	51.55	51.219	52.541	0					78	25	5	0	0	0	0.042197	1	18311	18311		51.63	30.093	1	271220000			395	203	277	279	378	378					0.07480550562308963
AAVWPYRRL	9	Unmodified	_AAVWPYRRL_					0	0	0		ATP13A1|p.G798Afs*55|1|0.25|ENSG00000105726|chr19:19649883-19649883|C/-|frameshift_variant;ENSG00000105726|ENST00000357324|ATP13A1;ENST00000487364.1_1_19:19771386-19774475:-|nuORF	ATP13A1|p.G798Afs*55|1|0.25|ENSG00000105726|chr19:19649883-19649883|C/-|frameshift_variant	ATP13A1|p.G798Afs*55|1|0.25|ENSG00000105726|chr19:19649883-19649883|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	377.61376953125	3	377.885576	1130.6349	0.032065	1.2117E-05	0.13856	5.236E-05	0.17063	6.4477E-05	377.8856506856394	50.645	1.6201	51.399	50.702	52.322	0.75406					100	31	5	0	0	0	0.042197	3	19087	18989;19087;19202		51.63	35.481	1	262850000			396	203	277	279	379;380;381	380					0.07480550562308963
AAVYKALSDHH	11	Unmodified	_AAVYKALSDHH_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	A375_MHC_IP_R1	1	404.142333984375	3	404.543767	1210.60947	-0.30347	-0.00012277	0.8002	0.00032372	0.49673	0.00020095	404.5439915080825	51.637	0.55834	51.637	51.27	51.829	0					17	10	2	0	0	0	0.72851	1	18262	18262		10.315	5.9091	1	2237700			397	5833;2856	278	280	382	382					0.012590312492420708
AAWLQVLPV	9	Unmodified	_AAWLQVLPV_					0	0	0		ENST00000562946.5_1_15:42519884-42565596:-|nuORF;ENSG00000103978|ENST00000389834|TMEM87A;ENST00000448392.5_1_15:42560200-42565602:-|nuORF;nc|ENSG00000103978|Q8NBN3-2|TMEM87A	ENST00000562946.5_1_15:42519884-42565596:-|nuORF	ENST00000562946.5_1_15:42519884-42565596:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	499.1973571777344	2	498.797478	995.580402	-0.60956	-0.00030404	-0.22302	-0.00011124	-0.83258	-0.00041529	498.7972816030073	131.15	0.25351	131.15	131.02	131.28	0					10	4	3	0	0	0	0.051888	1	50576	50576		63.563	13.894	1	11096000			398	2476	279	281	383	383					0.08243538690896912
AAWLQVLPV	9	Unmodified	_AAWLQVLPV_					0	0	0		ENST00000562946.5_1_15:42519884-42565596:-|nuORF;ENSG00000103978|ENST00000389834|TMEM87A;ENST00000448392.5_1_15:42560200-42565602:-|nuORF;nc|ENSG00000103978|Q8NBN3-2|TMEM87A	ENST00000562946.5_1_15:42519884-42565596:-|nuORF	ENST00000562946.5_1_15:42519884-42565596:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	499.19720458984375	2	498.797478	995.580402	-0.52957	-0.00026415	0.13759	6.8631E-05	-0.39198	-0.00019552	498.7975658150166	130.92	0.30518	131.14	131.01	131.31	0.2142					8	5	2	0	0	0	0.069885	1	51526	51526		56.541	16.584	1	10209000			399	2476	279	281	384	384					0.08243538690896912
AAWLRGLL	8	Unmodified	_AAWLRGLL_					0	0	0			REV__ENSG00000149654|ENST00000537909|CDH22	REV__ENSG00000149654|ENST00000537909|CDH22	MULTI-MSMS	A375_MHC_IP_R1	1	450.6767272949219	2	450.276712	898.538872	-0.13429	-6.0468E-05	0.016318	7.3476E-06	-0.11797	-5.3121E-05	450.276762801892	98.939	0.45834	98.939	98.659	99.117	0					15	8	2	0	0	0	0.6817	1	36343	36343		40.449	6.2612	1	981000	+		400	19695	280	282	385	385					0.08554402722222676
AAWLRGLL	8	Unmodified	_AAWLRGLL_					0	0	0			REV__ENSG00000149654|ENST00000537909|CDH22	REV__ENSG00000149654|ENST00000537909|CDH22	MULTI-MSMS	A375_MHC_IP_R2	2	450.6766357421875	2	450.276712	898.538872	-0.37024	-0.00016671	0.55512	0.00024996	0.18488	8.3247E-05	450.276915103556	97.821	0.50859	98.577	98.281	98.79	0.75586					12	9	2	0	0	0	0.6817	1	37144	37144		40.449	6.2612	1	922990	+		401	19695	280	282	386	386					0.08554402722222676
AAWLRGLL	8	Unmodified	_AAWLRGLL_					0	0	0			REV__ENSG00000149654|ENST00000537909|CDH22	REV__ENSG00000149654|ENST00000537909|CDH22	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	450.276712	898.538872	-0.13429	-6.0468E-05	0.016318	7.3476E-06	-0.11797	-5.3121E-05	450.276762801892	98.939	0.45834	98.939	98.659	99.117	0	0.18103	-0.00030144	NaN	40.449	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	981000	+		402	19695	280	282							0.08554402722222676
AAWLRGLL	8	Unmodified	_AAWLRGLL_					0	0	0			REV__ENSG00000149654|ENST00000537909|CDH22	REV__ENSG00000149654|ENST00000537909|CDH22	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	450.276712	898.538872	-0.37024	-0.00016671	0.55512	0.00024996	0.18488	8.3247E-05	450.276915103556	97.821	0.50859	98.577	98.281	98.79	0.75586	-0.18103	0.00018378	NaN	40.449	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	922990	+		403	19695	280	282							0.08554402722222676
AAWPASFTRY	10	Unmodified	_AAWPASFTRY_					0	0	0			REV__ENSG00000162542|ENST00000294543|TMCO4	REV__ENSG00000162542|ENST00000294543|TMCO4	MULTI-SECPEP	A375_MHC_IP_R2	2	391.28399658203125	3	390.529458	1168.56654	-0.38609	-0.00015078	-1.7947	-0.00070088	-2.1808	-0.00085166	390.52841644721667	34.96	0.55557	35.724	35.525	36.081	0.76338					13	10	2	0	0	0	0.89109	1	12754	12754		3.8763	0	1	1056000	+		404	20265	281	283	387	387					-0.010997388081932513
AAWPPGRL	8	Unmodified	_AAWPPGRL_					0	0	0		ENST00000544336.5_2_6:170891348-170893772:-|nuORF;ENST00000392090.6_1_6:170892831-170893613:-|nuORF;ENST00000541970.5_1_6:170892831-170893562:-|nuORF	ENST00000544336.5_2_6:170891348-170893772:-|nuORF	ENST00000544336.5_2_6:170891348-170893772:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	434.64324951171875	2	434.245412	866.476272	-0.080505	-3.4959E-05	-1.0755	-0.00046702	-1.156	-0.00050198	434.24335399238106	111.28	2.2453	112.02	111.19	113.44	0.73692					136	43	5	0	0	0	0.77781	1	41785	41785		2.8892	2.8892	1	13016000			405	13314	282	284	388	388					0.037692566540499683
AAWQILDQP	9	Unmodified	_AAWQILDQP_					0	0	0			REV__nc|ENSG00000065371|Q9HAT0-2|ROPN1	REV__nc|ENSG00000065371|Q9HAT0-2|ROPN1	MSMS	A375_MHC_IP_R2	2	521.2333984375	2	521.271824	1040.5291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.97	1	142.01	141.51	142.51	0.030731								0	0	0	0.15486	1	55513	55513		3.9444	1.3669	1		+		406	16497	283	285	389	389					0.010451699261921021
AAYDRQQLW	9	Unmodified	_AAYDRQQLW_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	A375_MHC_IP_R1	1	576.199951171875	2	575.78563	1149.55671	-0.10009	-5.7633E-05	0.37279	0.00021465	0.2727	0.00015702	575.7859008060128	56.861	0.40862	56.861	56.599	57.007	0					16	7	3	0	0	0	0.073067	2	20408	20369;20408		55.503	9.6316	1	5671200			407	8538	284	286	390;391	391					-0.01208926813569633
AAYDRQQLW	9	Unmodified	_AAYDRQQLW_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	A375_MHC_IP_R2	2	576.1858520507812	2	575.78563	1149.55671	-0.41096	-0.00023663	0.38397	0.00022109	-0.026992	-1.5541E-05	575.7860068089768	56.102	0.35841	56.853	56.642	57	0.75014					11	6	2	0	0	0	0.066859	1	21194	21194		57.722	9.9733	1	4721600			408	8538	284	286	392	392					-0.01208926813569633
AAYEIFKI	8	Unmodified	_AAYEIFKI_					0	0	0		ABCB1|p.T1015Pfs*3|1|0.21|ENSG00000085563|chr7:87516550-87516550|T/-|frameshift_variant;nc|ENSG00000085563|P08183-2|ABCB1;ENSG00000085563|ENST00000622132|ABCB1	ABCB1|p.T1015Pfs*3|1|0.21|ENSG00000085563|chr7:87516550-87516550|T/-|frameshift_variant	ABCB1|p.T1015Pfs*3|1|0.21|ENSG00000085563|chr7:87516550-87516550|T/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	477.67633056640625	2	477.768386	953.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.886	1	96.886	96.386	97.386	0								0	0	0	0.16876	1	35602	35602		15.768	4.6538	1				409	8	285	287	393	393					0.04359857045631088
AAYGYGIRY	9	Unmodified	_AAYGYGIRY_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENSG00000068976|ENST00000164139|PYGM;ENST00000530336.2_1_14:51390668-51411121:-|nuORF;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	A375_MHC_IP_R1	1	517.1817626953125	2	517.258717	1032.50288	-0.4096	-0.00021187	0.097377	5.0369E-05	-0.31222	-0.0001615	517.2587574003204	51.383	0.7101	51.383	51.068	51.778	0					29	13	3	0	0	0	0.1277	1	18284	18284		54.774	37.831	1	10018000			410	2241;2187	286	288	394	394					-0.012070992452891005
AAYGYGIRY	9	Unmodified	_AAYGYGIRY_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENSG00000068976|ENST00000164139|PYGM;ENST00000530336.2_1_14:51390668-51411121:-|nuORF;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R2	2	517.6586303710938	2	517.258717	1032.50288	-0.85427	-0.00044188	0.31171	0.00016123	-0.54256	-0.00028065	517.2588098304138	50.766	0.55462	51.52	51.26	51.815	0.75406					18	10	2	0	0	0	0.034481	1	19066	19066		71.134	49.387	1	10378000			411	2241;2187	286	288	395	395					-0.012070992452891005
AAYLRALSL	9	Unmodified	_AAYLRALSL_					0	0	0		nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-2|OGT	nc|ENSG00000147162|O15294-3|OGT	nc|ENSG00000147162|O15294-3|OGT	MULTI-MSMS	A375_MHC_IP_R2	2	489.34100341796875	2	489.292559	976.570566	-0.58702	-0.00028722	-0.59314	-0.00029022	-1.1802	-0.00057744	489.2920640569954	82.427	0.60965	83.17	82.787	83.397	0.74293					17	11	2	0	0	0	0.073067	1	31247	31247		55.503	13.663	1	3961300			412	5664	287	289	396	396					0.0813435068552053
AAYLRALSL	9	Unmodified	_AAYLRALSL_					0	0	0		nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-2|OGT	nc|ENSG00000147162|O15294-3|OGT	nc|ENSG00000147162|O15294-3|OGT	MULTI-MATCH	A375_MHC_IP_R1	1		2	489.292559	976.570566	-0.3026	-0.00014806	-0.74193	-0.00036302	-1.0445	-0.00051108	489.2918027619518	83.406	0.71163	83.406	83.075	83.786	0	0.11796	-0.0001161	NaN	55.503	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3567000			413	5664	287	289							0.0813435068552053
AAYRNLGQNLW	11	Unmodified	_AAYRNLGQNLW_					0	0	0		ENSG00000179051|ENST00000375436|RCC2;RCC2|p.G253Afs*15|1|0.1|ENSG00000179051|chr1:17420815-17420815|C/-|frameshift_variant	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-SECPEP	A375_MHC_IP_R1	1	652.7742919921875	2	653.338561	1304.66257	-0.41037	-0.00026811	0.078008	5.0966E-05	-0.33236	-0.00021714	653.3393235950889	73.541	0.25366	73.541	73.336	73.589	0					6	4	2	0	0	0	0.99424	1	26782	26782		8.1555	1.4324	1	928300			414	8201	288	290	397	397					0.022424090318963863
ACCLIVCG	8	Unmodified	_ACCLIVCG_					0	0	0			REV__ENST00000489485.5_1_3:170139112-170150541:+|nuORF	REV__ENST00000489485.5_1_3:170139112-170150541:+|nuORF	MSMS	A375_MHC_IP_R2	2	391.1332092285156	2	391.173895	780.333238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.56	1	112.28	111.78	112.78	0.72458								0	0	0	0.16876	1	42061	42061		6.3541	1.1234	1		+		415	16230	289	291	398	398					-0.06571578115358534
ACCSCSDVFQY	11	Unmodified	_ACCSCSDVFQY_					0	0	0		nc|ENSG00000089041|Q99572-3|P2RX7;ENST00000539695.5_1_12:121570737-121600081:+|nuORF;nc|ENSG00000089041|Q99572-5|P2RX7;nc|ENSG00000089041|Q99572-2|P2RX7;ENSG00000089041|ENST00000328963|P2RX7	nc|ENSG00000089041|Q99572-3|P2RX7	nc|ENSG00000089041|Q99572-3|P2RX7	MSMS	A375_MHC_IP_R2	2	613.152587890625	2	613.219759	1224.42497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.085	1	30.803	30.303	31.303	0.71857								0	0	0	0.16258	1	10553	10553		5.2969	0.39987	1				416	1909	290	292	399	399					-0.17826984279508906
ACCSGHFRYFY	11	Unmodified	_ACCSGHFRYFY_					0	0	0			REV__ENSG00000134490|ENST00000383233|TMEM241	REV__ENSG00000134490|ENST00000383233|TMEM241	MULTI-MSMS	A375_MHC_IP_R1	1	452.25439453125	3	451.854959	1352.54305	-0.2179	-9.8457E-05	-0.52547	-0.00023743	-0.74336	-0.00033589	451.8546152405989	33.254	0.65855	33.254	33.04	33.698	0					24	12	3	0	0	0	0.7359	1	10850	10850		1.3296	0.21989	1	4209000	+		417	18783	291	293	400	400					-0.11912243908682285
ACEGTLACST	10	Unmodified	_ACEGTLACST_					0	0	0		ENSG00000137714|ENST00000260270|FDX1	ENSG00000137714|ENST00000260270|FDX1	ENSG00000137714|ENST00000260270|FDX1	MSMS	A375_MHC_IP_R1	1	478.1412048339844	2	478.19661	954.378667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.13	1	101.13	100.63	101.63	0								0	0	0	0.15332	1	37170	37170		10.074	0	1				418	4908	292	294	401	401					-0.1003468111928214
ACFLKEDDSY	10	Unmodified	_ACFLKEDDSY_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MSMS	A375_MHC_IP_R2	2	595.7304077148438	2	595.755346	1189.49614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.983	1	87.716	87.216	88.216	0.733								0	0	0	0.15435	1	33078	33078		6.7232	0.51738	1				419	3741	293	295	402	402					-0.09102824978845092
ACGICFSSTY	10	Unmodified	_ACGICFSSTY_					0	0	0		ENST00000520539.5_1_8:103293570-103293621:-|nuORF	ENST00000520539.5_1_8:103293570-103293621:-|nuORF	ENST00000520539.5_1_8:103293570-103293621:-|nuORF	MSMS	A375_MHC_IP_R1	1	526.2185668945312	2	526.214803	1050.41505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.403	1	45.403	44.903	45.903	0								0	0	0	0.15308	1	15885	15885		10.824	0.64053	1				420	12995	294	296	403	403					-0.10813804222561885
ACHYIVNLR	9	Unmodified	_ACHYIVNLR_					0	0	0		nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E;ENSG00000198216|ENST00000367573|CACNA1E	nc|ENSG00000198216|Q15878-2|CACNA1E	nc|ENSG00000198216|Q15878-2|CACNA1E	MSMS	A375_MHC_IP_R1	1	363.6297607421875	3	363.527171	1087.55968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.013	1	47.013	46.513	47.513	0								0	0	0	0.15486	1	16522	16522		2.4985	0	1				421	9243	295	297	404	404					0.01940625039560473
ACLHQPGLQRA	11	Unmodified	_ACLHQPGLQRA_					0	0	0		ENST00000580357.1_1_17:26658777-26662483:-|nuORF;ENST00000580991.1_1_17:26658777-26662483:-|nuORF;ENST00000582797.5_1_17:26657393-26662483:-|nuORF	ENST00000580357.1_1_17:26658777-26662483:-|nuORF	ENST00000580357.1_1_17:26658777-26662483:-|nuORF	MSMS	A375_MHC_IP_R1	1	398.6118469238281	3	398.545113	1192.61351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.703	1	28.703	28.203	29.203	0								0	0	0	0.16112	1	8892	8892		12.856	1.3612	1				422	13672	296	298	405	405					0.024907974712959913
ACPDWRGDF	9	Unmodified	_ACPDWRGDF_					0	0	0		PCNT|p.L2453F|1|0.4|ENSG00000160299|chr21:46427658-46427658|C/T|missense_variant	PCNT|p.L2453F|1|0.4|ENSG00000160299|chr21:46427658-46427658|C/T|missense_variant	PCNT|p.L2453F|1|0.4|ENSG00000160299|chr21:46427658-46427658|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	533.70751953125	2	533.724184	1065.43381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.718	1	82.461	81.961	82.961	0.74293								0	0	0	0.15486	1	31038	31038		4.756	0	1				423	15146	297	299	406	406					-0.09628506536500936
ACRPQCYSY	9	Unmodified	_ACRPQCYSY_					0	0	0			REV__ENST00000598038.5_1_19:17447996-17448320:+|nuORF	REV__ENST00000598038.5_1_19:17447996-17448320:+|nuORF	MSMS	A375_MHC_IP_R1	1	545.7017211914062	2	545.725869	1089.43719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.379	1	83.379	82.879	83.879	0								0	0	0	0.15486	1	30510	30510		12.532	3.1841	1		+		424	26484	298	300	407	407					-0.10395579754140272
ACSHMEFY	8	Unmodified	_ACSHMEFY_					0	0	0		ENSG00000126882|ENST00000372271|FAM78A	ENSG00000126882|ENST00000372271|FAM78A	ENSG00000126882|ENST00000372271|FAM78A	MULTI-MSMS	A375_MHC_IP_R2	2	494.6605224609375	2	494.188588	986.362623	-0.6376	-0.00031509	0.83845	0.00041435	0.20085	9.9257E-05	494.1890735941252	51.182	0.30538	51.934	51.813	52.118	0.75246					7	5	2	0	0	0	0.77702	1	19305	19305		5.7604	5.7604	1	599220			425	4068	299	301	408	408					-0.131103425655283
ACYERSNEY	9	Unmodified	_ACYERSNEY_					0	0	0		nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000494081.5_1_20:57478601-57480533:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF	nc|ENSG00000087460|P63092-3|GNAS	nc|ENSG00000087460|P63092-3|GNAS	MULTI-MSMS	A375_MHC_IP_R1	1	568.1288452148438	2	567.729663	1133.44477	-0.39839	-0.00022618	-0.21537	-0.00012227	-0.61376	-0.00034845	567.7294202687167	23.202	0.45876	23.202	23.024	23.483	0					12	8	2	0	0	0	0.0098085	1	6336	6336		114.2	81.416	1	7027000			426	1873	300	302	409	409					-0.11661148952885014
ACYERSNEY	9	Unmodified	_ACYERSNEY_					0	0	0		nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000494081.5_1_20:57478601-57480533:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF	nc|ENSG00000087460|P63092-3|GNAS	nc|ENSG00000087460|P63092-3|GNAS	MULTI-MSMS	A375_MHC_IP_R2	2	568.1292114257812	2	567.729663	1133.44477	-0.70066	-0.00039779	0.046556	2.6431E-05	-0.6541	-0.00037135	567.72964446111	20.777	0.40685	21.387	21.16	21.566	0.61029					13	7	2	0	0	0	0.04093	2	6489	6489;6533		67.838	35.052	1	1521900			427	1873	300	302	410;411	410					-0.11661148952885014
ADADGLFMVT	10	Unmodified	_ADADGLFMVT_					0	0	0		ENST00000467485.5_1_6:26384034-26390495:+|nuORF;nc|ENSG00000124508|Q8WVV5-2|BTN2A2;nc|ENSG00000124508|Q8WVV5-4|BTN2A2;ENSG00000124508|ENST00000356709|BTN2A2	ENST00000467485.5_1_6:26384034-26390495:+|nuORF	ENST00000467485.5_1_6:26384034-26390495:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	520.734375	2	520.241875	1038.4692	-0.8793	-0.00045745	4.0204	0.0020916	3.1411	0.0016341	520.244147563739	35.406	0.55725	36.169	35.929	36.486	0.76338					14	10	2	0	0	0	0.70651	1	12900	12900		9.3831	1.473	1	1705100			428	3908	301	303	412	412					-0.04849888799344626
ADADLLLRY	9	Unmodified	_ADADLLLRY_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	A375_MHC_IP_R1	1	525.684814453125	2	525.284931	1048.55531	-0.34188	-0.00017959	1.4274	0.00074979	1.0855	0.0005702	525.2860216955809	82.102	1.0138	82.102	81.506	82.52	0					36	19	3	0	0	0	0.04093	1	30014	30014		67.838	35.052	1	3751700			429	3941	302	304	413	413					0.032974390976505674
ADALLTGSLV	10	Unmodified	_ADALLTGSLV_					0	0	0			REV__ENST00000455854.2_1_6:43491608-43492751:-|nuORF	REV__ENST00000455854.2_1_6:43491608-43492751:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	959.5888671875	1	959.540788	958.533512	-0.11073	-0.00010625	0.13806	0.00013248	0.027339	2.6233E-05	959.5408925907249	98.312	0.55896	99.072	98.742	99.301	0.75977					25	10	3	0	0	0	0.12314	2	37243	37243;37354		58.679	22.552	1	11116000	+		430	18313	303	305	414;415	414					0.05258634349104341
ADALQLQLF	9	Unmodified	_ADALQLQLF_					0	0	0			REV__ENSG00000168393|ENST00000305784|DTYMK	REV__ENSG00000168393|ENST00000305784|DTYMK	MSMS	A375_MHC_IP_R2	2	509.6891784667969	2	509.782025	1017.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.878	1	63.621	63.121	64.121	0.74263								0	0	0	0.15411	1	23837	23837		14.838	0.93222	1		+		431	20850	304	306	416	416					0.04142340585997317
ADAWYLKQEEY	11	Unmodified	_ADAWYLKQEEY_					0	0	0			REV__ENSG00000070018|ENST00000261349|LRP6	REV__ENSG00000070018|ENST00000261349|LRP6	MULTI-SECPEP	A375_MHC_IP_R1	1	473.1451110839844	3	472.554108	1414.6405	-0.34643	-0.00016371	0.32717	0.00015461	-0.019261	-9.102E-06	472.5542622691653	55.915	0.91523	55.915	55.482	56.397	0					20	17	2	0	0	0	0.99227	1	20002	20002		2.6312	0.37851	1	2064100	+		432	16562	305	307	417	417					-0.05023860227174737
ADDAGAAGGPG	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ADDAGAAGGPG_					1	0	0		ENST00000533161.5_1_16:2012676-2014626:-|nuORF;ENSG00000140988|ENST00000343262|RPS2;ENST00000531065.5_1_16:2014195-2014626:-|nuORF;ENST00000527826.1_1_16:2014326-2014626:-|nuORF	ENST00000533161.5_1_16:2012676-2014626:-|nuORF	ENST00000533161.5_1_16:2012676-2014626:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	450.6687927246094	2	450.688321	899.362089	-0.16327	-7.3582E-05	-0.34361	-0.00015486	-0.50688	-0.00022844	450.6880053423585	34.724	0.65981	34.724	34.353	35.013	0					15	12	2	0	0	0	0.36362	1	11516	11516		41.84	34.55	1	1951300			433	5202	306	308	418	418					-0.09161722689361795
ADDAGAAGGPG	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ADDAGAAGGPG_					1	0	0		ENST00000533161.5_1_16:2012676-2014626:-|nuORF;ENSG00000140988|ENST00000343262|RPS2;ENST00000531065.5_1_16:2014195-2014626:-|nuORF;ENST00000527826.1_1_16:2014326-2014626:-|nuORF	ENST00000533161.5_1_16:2012676-2014626:-|nuORF	ENST00000533161.5_1_16:2012676-2014626:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	451.0879821777344	2	450.688321	899.362089	-0.56597	-0.00025508	0.16067	7.2413E-05	-0.4053	-0.00018266	450.688272063071	34.279	0.45991	35.032	34.904	35.364	0.75225					11	8	2	0	0	0	0.25866	1	12393	12393		49.933	34.086	1	2771200			434	5202	306	308	419	419					-0.09161722689361795
ADDDDDEME	9	Unmodified	_ADDDDDEME_					0	0	0			REV__nc|ENSG00000171634|Q12830-4|BPTF	REV__nc|ENSG00000171634|Q12830-4|BPTF	MSMS	A375_MHC_IP_R1	1	527.6483764648438	2	527.661309	1053.30806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.73	1	87.73	87.23	88.23	0								0	0	0	0.15486	1	32196	32196		1.6526	0.96225	1		+		435	21084	307	309	420	420					-0.21645727693908157
ADDEAQIEF	9	Unmodified	_ADDEAQIEF_					0	0	0			REV__ENSG00000123064|ENST00000306014|DDX54	REV__ENSG00000123064|ENST00000306014|DDX54	MULTI-MSMS	A375_MHC_IP_R1	1	519.2109375	2	519.224736	1036.43492	-0.48345	-0.00025102	-0.39076	-0.00020289	-0.87421	-0.00045391	519.2244741645899	63.487	0.56305	63.487	63.223	63.786	0					18	10	2	0	0	0	0.55471	1	22905	22905		17.113	4.0704	1	3085000	+		436	18228	308	310	421	421					-0.08184013686604885
ADDEAQIEF	9	Unmodified	_ADDEAQIEF_					0	0	0			REV__ENSG00000123064|ENST00000306014|DDX54	REV__ENSG00000123064|ENST00000306014|DDX54	MULTI-MSMS	A375_MHC_IP_R2	2	519.6664428710938	2	519.224736	1036.43492	-0.65268	-0.00033889	0.068739	3.5691E-05	-0.58394	-0.0003032	519.2247096414299	62.966	0.60596	63.708	63.383	63.989	0.74263					25	11	3	0	0	0	0.38603	1	23860	23860		25.399	4.9457	1	3484200	+		437	18228	308	310	422	422					-0.08184013686604885
ADDEAQIEF	9	Unmodified	_ADDEAQIEF_					0	0	0			REV__ENSG00000123064|ENST00000306014|DDX54	REV__ENSG00000123064|ENST00000306014|DDX54	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	519.224736	1036.43492	-0.48345	-0.00025102	-0.39076	-0.00020289	-0.87421	-0.00045391	519.2244741645899	63.487	0.56305	63.487	63.223	63.786	0	-0.11073	-0.00019947	NaN	25.399	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3085000	+		438	18228	308	310							-0.08184013686604885
ADDGWAGGQRS	11	Unmodified	_ADDGWAGGQRS_					0	0	0		ENST00000489593.1_1_9:134321978-134323403:+|nuORF	ENST00000489593.1_1_9:134321978-134323403:+|nuORF	ENST00000489593.1_1_9:134321978-134323403:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	560.6802368164062	2	560.244326	1118.4741	-0.64326	-0.00036038	-1.2996	-0.00072807	-1.9428	-0.0010884	560.2434639771626	27.68	0.55676	28.358	28.149	28.706	0.67857					22	10	3	0	0	0	0.72932	1	9433	9433		9.544	0.79857	1	4521200			439	12633	309	311	423	423					-0.0803986861235444
ADDRTIRIW	9	Unmodified	_ADDRTIRIW_					0	0	0		ENST00000452475.5_1_7:72986280-72992879:-|nuORF;ENSG00000106638|ENST00000305632|TBL2	ENST00000452475.5_1_7:72986280-72992879:-|nuORF	ENST00000452475.5_1_7:72986280-72992879:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	382.9404296875	3	382.540245	1144.59891	0.31814	0.0001217	-0.029867	-1.1425E-05	0.28828	0.00011028	382.54021648768406	57.643	0.5588	57.643	57.415	57.974	0					25	10	3	0	0	0	0.048392	1	20692	20692		64.927	36.432	1	5747100			440	2705	310	312	424	424					0.03239048594787164
ADDRTIRIW	9	Unmodified	_ADDRTIRIW_					0	0	0		ENST00000452475.5_1_7:72986280-72992879:-|nuORF;ENSG00000106638|ENST00000305632|TBL2	ENST00000452475.5_1_7:72986280-72992879:-|nuORF	ENST00000452475.5_1_7:72986280-72992879:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	382.9400634765625	3	382.540245	1144.59891	-0.54024	-0.00020666	0.018044	6.9024E-06	-0.5222	-0.00019976	382.5403316389111	56.801	0.61167	57.551	57.255	57.867	0.75014					27	11	4	0	0	0	0.058715	1	21476	21476		60.899	36.018	1	4594000			441	2705	310	312	425	425					0.03239048594787164
ADDSDNSNVDQ	11	Unmodified	_ADDSDNSNVDQ_					0	0	0			REV__CON__P31096	REV__CON__P31096	MULTI-MSMS	A375_MHC_IP_R1	1	590.6229858398438	2	590.223453	1178.43235	-0.28906	-0.00017061	-0.78295	-0.00046212	-1.072	-0.00063273	590.2230197378937	23.068	0.71039	23.068	22.823	23.533	0					25	13	3	0	0	0	0.73078	1	6269	6269		8.1555	8.1555	1	3181500	+	+	442	15864	311	313	426	426					-0.14972513882230487
ADEFDEPDWS	10	Unmodified	_ADEFDEPDWS_					0	0	0			REV__ENST00000497878.5_1_19:2988043-2994999:+|nuORF	REV__ENST00000497878.5_1_19:2988043-2994999:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	606.1301879882812	2	605.730383	1209.44621	-0.21008	-0.00012725	-0.50548	-0.00030618	-0.71556	-0.00043343	605.7299773126772	111.1	0.61443	111.1	110.8	111.41	0					18	11	2	0	0	0	0.91556	1	40726	40726		6.2058	0.9089	1	2578500	+		443	17353	312	314	427	427					-0.1501323638312897
ADEPIGVGLAV	11	Unmodified	_ADEPIGVGLAV_					0	0	0			REV__CON__P00978	REV__CON__P00978	MULTI-SECPEP	A375_MHC_IP_R1	1	520.1187744140625	2	520.784764	1039.55498	-0.62101	-0.00032341	-1.8628	-0.00097014	-2.4839	-0.0012936	520.7842256225757	25.619	0.30556	25.619	25.46	25.765	0					9	5	2	0	0	0	0.95991	1	7498	7498		8.7454	0	1	1734500	+	+	444	15852	313	315	428	428					0.03678019377821329
ADEPRGEAGHR	11	Unmodified	_ADEPRGEAGHR_					0	0	0			REV__ENST00000315422.8_1_11:64577237-64577864:-|nuORF	REV__ENST00000315422.8_1_11:64577237-64577864:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	399.25872802734375	3	398.858525	1193.55375	-0.39848	-0.00015894	0.21582	8.6082E-05	-0.18266	-7.2856E-05	398.8584968550199	20.753	0.86193	21.364	20.855	21.717	0.61029					38	16	4	0	0	0	0.71476	1	6468	6468		8.2864	0	1	2365800	+		445	23533	314	316	429	429					-0.03528801938364268
ADFATRDRY	9	Unmodified	_ADFATRDRY_					0	0	0		nc|ENSG00000221955|A0AV02-5|SLC12A8;nc|ENSG00000221955|A0AV02-4|SLC12A8;ENST00000479352.5_1_3:124802736-124844777:-|nuORF;nc|ENSG00000221955|A0AV02-3|SLC12A8;ENST00000473262.5_1_3:124802736-124896678:-|nuORF;ENSG00000221955|ENST00000469902|SLC12A8;nc|ENSG00000221955|A0AV02-2|SLC12A8	nc|ENSG00000221955|A0AV02-5|SLC12A8	nc|ENSG00000221955|A0AV02-5|SLC12A8	MSMS	A375_MHC_IP_R1	1	557.6871948242188	2	557.767437	1113.52032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.529	1	58.529	58.029	59.029	0								0	0	0	0.11922	1	21026	21026		36.127	5.4905	1				446	9674	315	317	430	430					-0.03189803710279193
ADFGLARLY	9	Unmodified	_ADFGLARLY_					0	0	0		CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13	CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant;nc|ENSG00000065883|Q14004-2|CDK13	CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	513.6425170898438	2	513.274367	1024.53418	-0.69682	-0.00035766	0.46915	0.0002408	-0.22768	-0.00011686	513.2743926448861	85.459	0.45741	85.459	85.056	85.513	0					12	8	2	0	0	0	0.20567	1	31267	31267		54.774	0	1	760800			447	351;1394	316	318	431	431					0.022894737888236705
ADFGLARLY	9	Unmodified	_ADFGLARLY_					0	0	0		CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13	CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant;nc|ENSG00000065883|Q14004-2|CDK13	CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	513.274367	1024.53418	-0.65001	-0.00033363	0.2138	0.00010974	-0.4362	-0.00022389	513.2743321454656	84.555	0.45409	85.291	85.12	85.574	0.73602	-0.083827	-7.4838E-05	NaN	30.637	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	905620			448	351;1394	316	318							0.022894737888236705
ADFRDLTSW	9	Unmodified	_ADFRDLTSW_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	A375_MHC_IP_R1	1	556.1640625	2	555.764363	1109.51417	-0.57151	-0.00031762	0.4499	0.00025004	-0.12161	-6.7584E-05	555.764436622647	95.943	0.86459	95.943	95.665	96.529	0					25	16	2	0	0	0	0.10637	1	35269	35269		49.527	13.4	1	2773500			449	9183	317	319	432	432					-0.03620321941821203
ADFRDLTSW	9	Unmodified	_ADFRDLTSW_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-SECPEP	A375_MHC_IP_R2	2	556.1644897460938	2	555.764363	1109.51417	-0.55146	-0.00030648	0.46585	0.0002589	-0.085611	-4.758E-05	555.7641815528251	95.228	0.76466	95.978	95.633	96.398	0.75045					29	14	3	0	0	0	0.23313	1	36192	36192		49.527	17.222	1	2447900			450	9183	317	319	433	433					-0.03620321941821203
ADGFIDLEEY	10	Unmodified	_ADGFIDLEEY_					0	0	0		nc|ENSG00000128595|O43852-6|CALU;nc|ENSG00000128595|O43852-2|CALU;ENSG00000128595|ENST00000249364|CALU;nc|ENSG00000128595|O43852-4|CALU;nc|ENSG00000128595|O43852-3|CALU;nc|ENSG00000128595|O43852-15|CALU;nc|ENSG00000128595|O43852-10|CALU	nc|ENSG00000128595|O43852-6|CALU	nc|ENSG00000128595|O43852-6|CALU	MSMS	A375_MHC_IP_R2	2	586.1884765625	2	586.261319	1170.50808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.142	1	25.785	25.285	26.285	0.64368								0	0	0	0.1524	1	8366	8366		13.042	1.4022	1				451	4151	318	320	434	434					-0.0703488496396858
ADGIHLLVGL	10	Unmodified	_ADGIHLLVGL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	A375_MHC_IP_R2	2	504.69903564453125	2	504.297842	1006.58113	-0.68239	-0.00034413	1.3415	0.00067653	0.65914	0.0003324	504.29864023984067	80.292	0.86268	81.036	80.657	81.52	0.74474					25	16	2	0	0	0	0.57505	1	30392	30392		22.736	6.5872	1	2866600			452	3337	319	321	435	435					0.07810333339955378
ADGIVSKNF	9	Unmodified	_ADGIVSKNF_					0	0	0		ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	MULTI-SECPEP	A375_MHC_IP_R1	1	476.1505126953125	2	475.750724	949.486896	-0.48291	-0.00022974	0.092865	4.4181E-05	-0.39004	-0.00018556	475.7508144216188	40.381	0.3057	40.381	40.203	40.509	0					9	5	2	0	0	0	0.47674	1	13873	13873		29.841	11.694	1	8487400			453	7651	320	322	436	436					0.010131945178159185
ADGQINDF	8	Unmodified	_ADGQINDF_					0	0	0			REV__ENSG00000171853|ENST00000324266|TRAPPC12	REV__ENSG00000171853|ENST00000324266|TRAPPC12	MULTI-MSMS	A375_MHC_IP_R1	1	440.5957336425781	2	440.195782	878.377011	-0.070359	-3.0972E-05	-0.13964	-6.147E-05	-0.21	-9.2441E-05	440.1956973339629	63.474	0.76608	63.474	63.121	63.887	0					23	14	2	0	0	0	0.70783	1	22925	22925		32.305	1.6689	1	2810500	+		454	21102	321	323	437	437					-0.06704230821378587
ADGQINDF	8	Unmodified	_ADGQINDF_					0	0	0			REV__ENSG00000171853|ENST00000324266|TRAPPC12	REV__ENSG00000171853|ENST00000324266|TRAPPC12	MULTI-MSMS	A375_MHC_IP_R2	2	440.59539794921875	2	440.195782	878.377011	-0.35205	-0.00015497	-0.038453	-1.6927E-05	-0.39051	-0.0001719	440.19570152685725	62.696	0.65762	63.439	63.13	63.788	0.74263					26	12	3	0	0	0	0.70783	1	23730	23730		32.305	1.6689	1	2433200	+		455	21102	321	323	438	438					-0.06704230821378587
ADGQINDF	8	Unmodified	_ADGQINDF_					0	0	0			REV__ENSG00000171853|ENST00000324266|TRAPPC12	REV__ENSG00000171853|ENST00000324266|TRAPPC12	MULTI-SECPEP	A375_MHC_IP_R2	2	439.6536560058594	2	440.195782	878.377011	-0.35205	-0.00015497	-0.038453	-1.6927E-05	-0.39051	-0.0001719	440.19570152685725	62.696	0.65762	63.439	63.13	63.788	0.74263					26	12	3	0	0	0	0.972	1	23691	23691		12.532	0.89125	1	2433200	+		456	21102	321	323	439	439					-0.06704230821378587
ADGRRLLY	8	Unmodified	_ADGRRLLY_					0	0	0			REV__ENSG00000089558|ENST00000264661|KCNH4	REV__ENSG00000089558|ENST00000264661|KCNH4	MULTI-SECPEP	A375_MHC_IP_R1	1	482.6535949707031	2	482.272158	962.529764	-0.67866	-0.0003273	-0.4228	-0.0002039	-1.1015	-0.0005312	482.2721394927252	26.236	0.50738	26.236	26.068	26.575	0					16	9	2	0	0	0	0.972	1	7739	7739		1.8442	0	1	2141800	+		457	16913	322	324	440	440					0.04700009365888036
ADGSMVWAF	9	Unmodified	_ADGSMVWAF_					0	0	0		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MSMS	A375_MHC_IP_R2	2	492.1632995605469	2	492.218203	982.421853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.291	1	42.066	41.566	42.566	0.77451								0	0	0	0.1535	1	15316	15316		15.847	1.0089	1				458	2464	323	325	441	441					-0.07006123279688836
ADHLANSW	8	Unmodified	_ADHLANSW_					0	0	0		nc|ENSG00000175221|Q9Y2X0-2|MED16;nc|ENSG00000175221|Q9Y2X0-3|MED16;ENSG00000175221|ENST00000325464|MED16;nc|ENSG00000175221|Q9Y2X0-5|MED16;nc|ENSG00000175221|Q9Y2X0-4|MED16	nc|ENSG00000175221|Q9Y2X0-2|MED16	nc|ENSG00000175221|Q9Y2X0-2|MED16	MULTI-MSMS	A375_MHC_IP_R1	1	457.6119079589844	2	457.211766	912.40898	-0.35411	-0.0001619	0.96311	0.00044035	0.609	0.00027844	457.2119188334969	37.881	0.40889	37.881	37.658	38.067	0					18	7	3	0	0	0	0.57209	1	12792	12792		46.021	19.137	1	2581000			459	7943	324	326	442	442					-0.050728183475712285
ADHLANSW	8	Unmodified	_ADHLANSW_					0	0	0		nc|ENSG00000175221|Q9Y2X0-2|MED16;nc|ENSG00000175221|Q9Y2X0-3|MED16;ENSG00000175221|ENST00000325464|MED16;nc|ENSG00000175221|Q9Y2X0-5|MED16;nc|ENSG00000175221|Q9Y2X0-4|MED16	nc|ENSG00000175221|Q9Y2X0-2|MED16	nc|ENSG00000175221|Q9Y2X0-2|MED16	MULTI-MSMS	A375_MHC_IP_R2	2	457.6118469238281	2	457.211766	912.40898	-0.94774	-0.00043332	0.75121	0.00034346	-0.19654	-8.9859E-05	457.21207445018376	36.971	0.35351	37.742	37.615	37.968	0.7709					11	6	2	0	0	0	0.23604	1	13534	13534		64.236	22.142	1	2609500			460	7943	324	326	443	443					-0.050728183475712285
ADIDIQDDKW	10	Unmodified	_ADIDIQDDKW_					0	0	0		ENSG00000107863|ENST00000396432|ARHGAP21;ENST00000486374.5_1_10:24873343-24884978:-|nuORF;ENST00000401578.2_1_6:80776237-80776996:-|nuORF	ENSG00000107863|ENST00000396432|ARHGAP21	ENSG00000107863|ENST00000396432|ARHGAP21	MULTI-MSMS	A375_MHC_IP_R1	1	610.2586669921875	2	609.785492	1217.55643	-0.20504	-0.00012503	-0.088249	-5.3813E-05	-0.29329	-0.00017884	609.7854081132258	68.861	0.45441	68.861	68.616	69.07	0					13	8	2	0	0	0	0.66857	1	25035	25035		15.739	6.9932	1	1247300			461	2765	325	327	444	444					-0.043643913241112386
ADIENVTKC	9	Unmodified	_ADIENVTKC_					0	0	0		ENSG00000177169|ENST00000321867|ULK1;ENST00000540647.5_1_12:132402872-132405903:+|nuORF;ENST00000540568.1_1_12:132405491-132405903:+|nuORF	ENSG00000177169|ENST00000321867|ULK1	ENSG00000177169|ENST00000321867|ULK1	MULTI-SECPEP	A375_MHC_IP_R1	1	496.1592102050781	2	496.739499	991.464446	-0.21311	-0.00010586	1.9811	0.00098408	1.768	0.00087822	496.7402341792702	78.934	0.30484	78.934	78.756	79.061	0					7	5	2	0	0	0	0.73363	1	28783	28783		10.824	8.5212	1	460000			462	8065	326	328	445	445					-0.03162772942118863
ADILAHEI	8	Unmodified	_ADILAHEI_					0	0	0		nc|ENSG00000105854|Q15165-3|PON2;nc|ENSG00000105854|Q15165-1|PON2;ENSG00000105854|ENST00000222572|PON2	nc|ENSG00000105854|Q15165-3|PON2	nc|ENSG00000105854|Q15165-3|PON2	MULTI-SECPEP	A375_MHC_IP_R2	2	440.9549560546875	2	441.239993	880.465432	-0.61077	-0.0002695	-0.32687	-0.00014423	-0.93764	-0.00041372	441.2398423013793	57.804	0.35386	58.553	58.375	58.729	0.74894					9	6	2	0	0	0	0.34394	1	21856	21856		60.39	6.814	1	1148200			463	2643	327	329	446	446					0.020418094890942484
ADILAHEI	8	Unmodified	_ADILAHEI_					0	0	0		nc|ENSG00000105854|Q15165-3|PON2;nc|ENSG00000105854|Q15165-1|PON2;ENSG00000105854|ENST00000222572|PON2	nc|ENSG00000105854|Q15165-3|PON2	nc|ENSG00000105854|Q15165-3|PON2	MULTI-MATCH	A375_MHC_IP_R1	1		2	441.239993	880.465432	-0.17711	-7.8147E-05	0.049669	2.1916E-05	-0.12744	-5.6231E-05	441.2400324286738	58.744	0.40701	58.744	58.531	58.938	0	0.095461	5.9412E-05	NaN	60.39	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1024700			464	2643	327	329							0.020418094890942484
ADIQTERAYQK	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ADIQTERAYQK_					1	0	0		ENSG00000142534|ENST00000270625|RPS11;ENST00000600027.5_1_19:49999677-50000944:+|nuORF;ENST00000599167.5_1_19:49999677-50000690:+|nuORF	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	A375_MHC_IP_R1	1	683.5217895507812	2	682.843873	1363.67319	-0.65541	-0.00044754	0.25401	0.00017345	-0.4014	-0.00027409	682.8439772612235	31.338	0.4048	31.338	31.16	31.565	0					17	7	3	0	0	0	0.0068074	1	10020	10020		94.801	72.143	1	8054900			465	5311	328	330	447	447					0.005903468956603319
ADIQTERAYQK	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ADIQTERAYQK_					1	0	0		ENSG00000142534|ENST00000270625|RPS11;ENST00000600027.5_1_19:49999677-50000944:+|nuORF;ENST00000599167.5_1_19:49999677-50000690:+|nuORF	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-SECPEP	A375_MHC_IP_R2	2	683.2432250976562	2	682.843873	1363.67319	-0.67467	-0.00046069	-0.28123	-0.00019204	-0.95591	-0.00065273	682.8435794401461	30.716	0.50389	31.435	31.266	31.77	0.71857					18	9	3	0	0	0	0.15718	1	10843	10843		72.276	51.862	1	5253500			466	5311	328	330	448	448					0.005903468956603319
ADIVATGF	8	Unmodified	_ADIVATGF_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	A375_MHC_IP_R1	1	793.5101318359375	1	793.409046	792.401769	-0.49664	-0.00039404	0.55272	0.00043853	0.056084	4.4497E-05	793.4091138401327	80.072	0.45995	80.072	79.778	80.238	0					16	8	2	0	0	0	0.27045	1	29280	29280		61.357	7.7819	1	3058100			467	2432	329	331	449	449					-0.002735509479975917
ADIVATGF	8	Unmodified	_ADIVATGF_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-SECPEP	A375_MHC_IP_R2	2	793.8081665039062	1	793.409046	792.401769	-0.84873	-0.00067339	0.45265	0.00035914	-0.39608	-0.00031425	793.4092943214832	79.345	0.45328	80.09	79.796	80.249	0.74474					14	8	2	0	0	0	0.17547	1	30080	30080		85.357	34.502	1	2420100			468	2432	329	331	450	450					-0.002735509479975917
ADIVIPQEY	9	Unmodified	_ADIVIPQEY_					0	0	0		ENSG00000145725|ENST00000358359|PPIP5K2;nc|ENSG00000145725|O43314-2|PPIP5K2	ENSG00000145725|ENST00000358359|PPIP5K2	ENSG00000145725|ENST00000358359|PPIP5K2	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6709594726562	2	524.27149	1046.52843	-0.51215	-0.0002685	-0.689	-0.00036122	-1.2011	-0.00062973	524.2713755582809	87.702	0.81467	87.702	87.186	88	0					20	15	2	0	0	0	0.31606	1	32179	32179		32.786	5.1569	1	2624000			469	5574	330	332	451	451					0.00702330486478786
ADIVIPQEY	9	Unmodified	_ADIVIPQEY_					0	0	0		ENSG00000145725|ENST00000358359|PPIP5K2;nc|ENSG00000145725|O43314-2|PPIP5K2	ENSG00000145725|ENST00000358359|PPIP5K2	ENSG00000145725|ENST00000358359|PPIP5K2	MULTI-SECPEP	A375_MHC_IP_R2	2	524.6710205078125	2	524.27149	1046.52843	-0.40384	-0.00021172	-0.2294	-0.00012027	-0.63323	-0.00033199	524.2712890954264	87.051	0.55793	87.784	87.509	88.067	0.733					24	10	3	0	0	0	0.5212	1	33094	33094		26.268	8.1218	1	2548500			470	5574	330	332	452	452					0.00702330486478786
ADKAAYFQN	9	Unmodified	_ADKAAYFQN_					0	0	0		MYH1|p.L390F|1|0.06|ENSG00000109061|chr17:10512172-10512172|G/A|missense_variant	MYH1|p.L390F|1|0.06|ENSG00000109061|chr17:10512172-10512172|G/A|missense_variant	MYH1|p.L390F|1|0.06|ENSG00000109061|chr17:10512172-10512172|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	514.6982421875	2	514.245806	1026.47706	0.049692	2.5554E-05	-1.0767	-0.00055367	-1.027	-0.00052812	514.2450192767028	44.799	0.81383	44.799	44.318	45.132	0					20	15	2	0	0	0	0.51106	1	15656	15656		19.257	2.3147	1	1923500			471	14430	331	333	453	453					-0.03511993487563814
ADKLRKDLFF	10	Unmodified	_ADKLRKDLFF_					0	0	0		TRAIP|p.S231F|1|0.28|ENSG00000183763|chr3:49840998-49840998|G/A|missense_variant	TRAIP|p.S231F|1|0.28|ENSG00000183763|chr3:49840998-49840998|G/A|missense_variant	TRAIP|p.S231F|1|0.28|ENSG00000183763|chr3:49840998-49840998|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	417.95068359375	3	418.239796	1251.69756	0.066733	2.791E-05	-2.136	-0.00089336	-2.0693	-0.00086545	418.5720259601504	31.162	0.25379	31.162	31.059	31.312	0					6	4	2	0	0	0	0.93873	1	9978	9978		5.0475	0	1	632180			472	30069	332	334	454	454					0.08177651839810096
ADKLWQIKAGS	11	Unmodified	_ADKLWQIKAGS_					0	0	0			REV__nc|ENSG00000179912|Q9Y2K5-3|R3HDM2	REV__nc|ENSG00000179912|Q9Y2K5-3|R3HDM2	MULTI-MSMS	A375_MHC_IP_R1	1	406.6275939941406	3	406.227667	1215.66117	-0.11888	-4.8293E-05	-0.10015	-4.0683E-05	-0.21903	-8.8976E-05	406.22767155637035	35.521	0.56276	35.521	35.319	35.881	0					25	10	3	0	0	0	0.48101	1	11842	11842		32.616	12.991	1	4002400	+		473	21586	333	335	455	455					0.06196774943123273
ADKSAKWNMLF	11	Unmodified	_ADKSAKWNMLF_					0	0	0			REV__ENSG00000178125|ENST00000685739|PPP1R42	REV__ENSG00000178125|ENST00000685739|PPP1R42	MSMS	A375_MHC_IP_R2	2	655.8306274414062	2	655.831723	1309.64889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.177	1	94.921	94.421	95.421	0.74474								0	0	0	0.16124	1	35793	35793		12.241	0.74595	1		+		474	21488	334	336	456	456					0.006454152084188536
ADKTPMEHAP	10	Unmodified	_ADKTPMEHAP_					0	0	0			REV__nc|ENSG00000099814|Q9Y4F5-3|CEP170B	REV__nc|ENSG00000099814|Q9Y4F5-3|CEP170B	MULTI-SECPEP	A375_MHC_IP_R2	2	366.27069091796875	3	366.174574	1095.50189	-0.16696	-6.1136E-05	-3.7221	-0.001363	-3.8891	-0.0014241	366.17345793188923	23.829	0.20439	24.459	24.384	24.588	0.63014					5	3	2	0	0	0	0.93873	1	7731	7731		7.9454	6.7521	1	643920	+		475	17024	335	337	457	457					-0.042036816764948526
ADLEAQVESLK	11	Unmodified	_ADLEAQVESLK_					0	0	0		nc|ENSG00000126337|O76013-2|KRT36;ENSG00000126337|ENST00000328119|KRT36;CON__O76013;CON__Q497I4;ENSG00000108759|ENST00000225899|KRT32;CON__Q14532;CON__A2AB72	nc|ENSG00000126337|O76013-2|KRT36;ENSG00000108759|ENST00000225899|KRT32	ENSG00000108759|ENST00000225899|KRT32	MULTI-SECPEP	A375_MHC_IP_R2	2	601.403076171875	2	601.816793	1201.61903	-0.47779	-0.00028754	-0.84697	-0.00050972	-1.3248	-0.00079726	601.8149509536731	75.78	0.25475	76.52	76.385	76.64	0.74052					5	4	2	0	0	0	0.94168	1	28774	28774		20.415	6.0092	1	461900		+	476	575;565	336	338	458	458					0.02628754744091566
ADLVAVENWY	10	Unmodified	_ADLVAVENWY_					0	0	0			REV__nc|ENSG00000029534|P16157-14|ANK1	REV__nc|ENSG00000029534|P16157-14|ANK1	MULTI-SECPEP	A375_MHC_IP_R2	2	590.6849365234375	2	590.287671	1178.56079	-0.97398	-0.00057493	-2.8784	-0.0016991	-3.8524	-0.002274	590.2863828670942	59.215	0.55691	59.962	59.742	60.299	0.74714					20	10	3	0	0	0	0.81532	1	22444	22444		24.991	4.5764	1	2134200	+		477	16297	337	339	459	459					-0.02134882110522085
ADLVAVENWY	10	Unmodified	_ADLVAVENWY_					0	0	0			REV__nc|ENSG00000029534|P16157-14|ANK1	REV__nc|ENSG00000029534|P16157-14|ANK1	MULTI-MATCH	A375_MHC_IP_R1	1		2	590.287671	1178.56079	-0.30167	-0.00017807	-2.7238	-0.0016078	-3.0255	-0.0017859	590.2862485348955	60.031	0.35667	60.031	59.803	60.159	0	0.034641	2.9693E-05	NaN	24.991	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2124300	+		478	16297	337	339							-0.02134882110522085
ADLYTTCLTY	10	Unmodified	_ADLYTTCLTY_					0	0	0		ENST00000409262.7_1_2:74331974-74332148:+|nuORF	ENST00000409262.7_1_2:74331974-74332148:+|nuORF	ENST00000409262.7_1_2:74331974-74332148:+|nuORF	MSMS	A375_MHC_IP_R2	2	582.1925048828125	2	582.26809	1162.52163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.94	1	107.7	107.2	108.2	0.75977								0	0	0	0.15158	1	40410	40410		14.838	0	1				479	11628	338	340	460	460					-0.05313350456412991
ADMGHLKY	8	Oxidation (M)	_ADM(Oxidation (M))GHLKY_		ADM(1)GHLKY		ADM(48)GHLKY	0	0	1		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	A375_MHC_IP_R1	1	475.65997314453125	2	475.723652	949.432752	-0.56818	-0.0002703	-0.089887	-4.2761E-05	-0.65807	-0.00031306	475.7235828398473	25.434	0.60997	25.434	25.104	25.714	0					18	11	2	0	0	0	0.53027	1	7341	7341		47.749	29.614	1	5533200			480	4431	339	341	461	461		231			-0.04398720905396658
ADMGHLKY	8	Oxidation (M)	_ADM(Oxidation (M))GHLKY_		ADM(1)GHLKY		ADM(42)GHLKY	0	0	1		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-SECPEP	A375_MHC_IP_R2	2	476.1232604980469	2	475.723652	949.432752	-0.92612	-0.00044058	-0.08889	-4.2287E-05	-1.015	-0.00048286	475.7235716001721	24.783	0.6087	25.427	25.161	25.77	0.64368					21	11	2	0	0	0	0.68831	1	8152	8152		41.84	34.55	1	3455000			481	4431	339	341	462	462		231			-0.04398720905396658
ADMGHLKY	8	Unmodified	_ADMGHLKY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-SECPEP	A375_MHC_IP_R2	2	468.1256408691406	2	467.726195	933.437837	-0.8798	-0.00041151	0.047301	2.2124E-05	-0.8325	-0.00038938	467.7262554104225	38.869	0.51245	39.644	39.453	39.965	0.77451					25	9	4	0	0	0	0.36486	1	14333	14333		71.134	32.982	1	7849700			482	4431	339	342	463	463					-0.03154417042787827
ADNDNDSTF	9	Unmodified	_ADNDNDSTF_					0	0	0		ENSG00000181092|ENST00000320741|ADIPOQ	ENSG00000181092|ENST00000320741|ADIPOQ	ENSG00000181092|ENST00000320741|ADIPOQ	MULTI-SECPEP	A375_MHC_IP_R1	1	499.0992126464844	2	499.688518	997.362483	-0.47053	-0.00023512	-2.2438	-0.0011212	-2.7143	-0.0013563	499.6870134943863	76.884	0.51058	76.884	76.572	77.083	0					18	9	3	0	0	0	0.76187	1	27987	27987		7.2892	0	1	1032200			483	8333	340	343	464	464					-0.13630347760170025
ADNLEKFGK	9	Unmodified	_ADNLEKFGK_					0	0	0		nc|ENSG00000141577|Q9UPN4-3|CEP131;ENSG00000141577|ENST00000450824|CEP131;nc|ENSG00000141577|Q9UPN4|CEP131	nc|ENSG00000141577|Q9UPN4-3|CEP131	nc|ENSG00000141577|Q9UPN4-3|CEP131	MSMS	A375_MHC_IP_R2	2	511.1893310546875	2	511.269281	1020.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.366	1	48.127	47.627	48.627	0.76128								0	0	0	0.15273	1	17759	17759		17.113	2.2746	1				484	5260	341	344	465	465					0.0145686606357458
ADNLGKLKRY	10	Unmodified	_ADNLGKLKRY_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	A375_MHC_IP_R1	1	393.9535827636719	3	393.227779	1176.66151	0.27383	0.00010768	-0.22868	-8.9924E-05	0.045146	1.7753E-05	393.22773417409337	21.26	0.86658	21.26	20.638	21.505	0					45	16	3	0	0	0	0.70312	1	5574	5574		10.899	0.74838	1	4454600	+		485	18428	342	345	466	466					0.08024194662993978
ADNLRLLL	8	Unmodified	_ADNLRLLL_					0	0	0			REV__ENST00000497700.1_1_15:44068610-44069126:-|nuORF	REV__ENST00000497700.1_1_15:44068610-44069126:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	464.2976379394531	2	464.284734	926.554916	-0.56879	-0.00026408	0.27556	0.00012794	-0.29322	-0.00013614	464.2848676087374	48.359	0.76054	49.116	48.879	49.639	0.75737					21	14	3	0	0	0	0.77488	1	18243	18243		13.508	1.8676	1	2160800	+		486	18473	343	346	467	467					0.0887006416847953
ADNWDKQY	8	Unmodified	_ADNWDKQY_					0	0	0			REV__NEB|p.V4554Gfs*42|1|0.12|ENSG00000183091|chr2:151562738-151562739|-/CC|frameshift_variant	REV__NEB|p.V4554Gfs*42|1|0.12|ENSG00000183091|chr2:151562738-151562739|-/CC|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	519.6373291015625	2	520.227613	1038.44067	-0.53923	-0.00028052	0.75518	0.00039287	0.21595	0.00011234	520.7296356972233	44.165	0.45622	44.934	44.732	45.188	0.7691					14	8	2	0	0	0	0.972	1	16479	16479		8.5933	4.6489	1	830760	+		487	21736	344	347	468	468					-0.07700870384292102
ADPCTGPQY	9	Unmodified	_ADPCTGPQY_					0	0	0			REV__ENST00000589179.5_1_12:53590773-53591061:-|nuORF	REV__ENST00000589179.5_1_12:53590773-53591061:-|nuORF	MSMS	A375_MHC_IP_R1	1	476.12347412109375	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.515	1	25.515	25.015	26.015	0								0	0	0	0.15486	1	7455	7455		12.532	3.1841	1		+		488	26419	345	348	469	469					-0.09679304039025283
ADPCTGPQY	9	Unmodified	_ADPCTGPQY_					0	0	0			REV__ENST00000589179.5_1_12:53590773-53591061:-|nuORF	REV__ENST00000589179.5_1_12:53590773-53591061:-|nuORF	MSMS	A375_MHC_IP_R2	2	476.1232604980469	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.691	1	25.334	24.834	25.834	0.64368								0	0	0	0.15486	1	8152	8152		12.532	3.1841	1		+		489	26419	345	348	470	470					-0.09679304039025283
ADPDMFLHI	9	Unmodified	_ADPDMFLHI_					0	0	0		tr|U7STY0|U7STY0_FUSNU4-hydroxybutyryl-CoAdehydratase/vinylacetyl-CoA-Delta-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01228PE=4SV=1	tr|U7STY0|U7STY0_FUSNU4-hydroxybutyryl-CoAdehydratase/vinylacetyl-CoA-Delta-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01228PE=4SV=1	tr|U7STY0|U7STY0_FUSNU4-hydroxybutyryl-CoAdehydratase/vinylacetyl-CoA-Delta-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01228PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	529.2152709960938	2	529.75241	1057.49027	-0.7036	-0.00037273	-1.6092	-0.00085249	-2.3128	-0.0012252	529.7520278291483	68.489	0.40711	68.489	68.361	68.769	0					12	7	2	0	0	0	0.75466	1	24789	24789		7.9102	3.9658	1	915890			490	29724	346	349	471	471					-0.036178786998334544
ADPDVCFDSSG	11	Unmodified	_ADPDVCFDSSG_					0	0	0			REV__nc|ENSG00000136295|Q9C0H2-3|TTYH3	REV__nc|ENSG00000136295|Q9C0H2-3|TTYH3	MULTI-MSMS	A375_MHC_IP_R2	2	557.113525390625	2	556.713679	1111.4128	-0.6031	-0.00033575	0.070808	3.942E-05	-0.53229	-0.00029633	556.7137462467438	46.662	1.2213	47.425	46.903	48.124	0.7623					61	23	3	0	0	0	0.73378	1	17390	17390		5.2969	0.54088	1	12257000	+		491	18930	347	350	472	472					-0.13844561426685686
ADPEVRTGHR	10	Unmodified	_ADPEVRTGHR_					0	0	0		FAN1|p.L916Tfs*77|1|0.02|ENSG00000198690|chr15:30929355-30929356|-/ACCCAGGCCCG|frameshift_variant;ENSG00000198690|ENST00000362065|FAN1;ENST00000565280.5_1_15:31198658-31229456:+|nuORF	FAN1|p.L916Tfs*77|1|0.02|ENSG00000198690|chr15:30929355-30929356|-/ACCCAGGCCCG|frameshift_variant	FAN1|p.L916Tfs*77|1|0.02|ENSG00000198690|chr15:30929355-30929356|-/ACCCAGGCCCG|frameshift_variant	MSMS	A375_MHC_IP_R2	2	569.2158203125	2	569.291611	1136.56867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.39	1	109.14	108.64	109.64	0.75436								0	0	0	0.14741	1	40928	40928		22.736	1.1993	1				492	9300	348	351	473	473					0.005846899296102492
ADPISQFHT	9	Unmodified	_ADPISQFHT_					0	0	0			REV__ENSG00000182255|ENST00000328224|KCNA4	REV__ENSG00000182255|ENST00000328224|KCNA4	MULTI-MSMS	A375_MHC_IP_R1	1	509.6533203125	2	508.245806	1014.47706	-0.30159	-0.00015328	1.6631	0.00084529	1.3616	0.000692	508.2456345742727	42.386	0.80798	42.386	41.982	42.79	0					53	15	5	0	0	0	0.29981	1	14618	14618		30.637	0.41173	1	73203000	+		493	21680	349	352	474	474					-0.029599934875591316
ADPLNPDLPS	10	Unmodified	_ADPLNPDLPS_					0	0	0		ENSG00000185519|ENST00000375662|FAM131C	ENSG00000185519|ENST00000375662|FAM131C	ENSG00000185519|ENST00000375662|FAM131C	MULTI-SECPEP	A375_MHC_IP_R2	2	519.2161865234375	2	519.758746	1037.50294	-0.98524	-0.00051209	-0.51431	-0.00026732	-1.4995	-0.0007794	519.7588585653726	61.451	0.50324	62.196	62.07	62.573	0.74503					13	9	2	0	0	0	0.79457	1	23258	23258		20.415	4.5674	1	795850			494	8672	350	353	475	475					-0.014311440359506378
ADPLPMCLY	9	Unmodified	_ADPLPMCLY_					0	0	0			REV__ENSG00000039987|ENST00000553030|BEST2	REV__ENSG00000039987|ENST00000553030|BEST2	MULTI-SECPEP	A375_MHC_IP_R2	2	511.1339111328125	2	511.737914	1021.46127	-0.7993	-0.00040903	-2.0267	-0.0010371	-2.826	-0.0014462	512.2393229175392	40.028	0.40528	40.803	40.524	40.93	0.77451					11	7	2	0	0	0	0.74651	1	14815	14815		4.756	2.6963	1	1066600	+		495	16335	351	354	476	476					-0.04859739320488643
ADPNHWRF	8	Unmodified	_ADPNHWRF_					0	0	0		nc|ENSG00000163508|O95936|EOMES;ENSG00000163508|ENST00000449599|EOMES;nc|ENSG00000163508|O95936-3|EOMES;nc|ENSG00000163508|O95936-2|EOMES;ENSG00000136535|ENST00000389554|TBR1	nc|ENSG00000163508|O95936|EOMES;ENSG00000136535|ENST00000389554|TBR1	ENSG00000136535|ENST00000389554|TBR1	MSMS	A375_MHC_IP_R2	2	521.6713256835938	2	521.746308	1041.47806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.976	1	85.712	85.212	86.212	0.73601								0	0	0	0.16876	1	32304	32304		11.64	1.5664	1				496	6671;4796	352	355	477	477					-0.041017343280145724
ADPSLALD	8	Unmodified	_ADPSLALD_					0	0	0		ENSG00000269190|ENST00000292852|FBXO17	ENSG00000269190|ENST00000292852|FBXO17	ENSG00000269190|ENST00000292852|FBXO17	MULTI-SECPEP	A375_MHC_IP_R1	1	802.0186157226562	1	801.398875	800.391599	-0.64469	-0.00051665	0.011095	8.8914E-06	-0.63359	-0.00050776	801.3987815346264	30.867	0.35555	30.867	30.703	31.059	0					11	6	2	0	0	0	0.972	1	9892	9892		12.532	0	1	1256000			497	9979	353	356	478	478					-0.01658158673228627
ADPSLALD	8	Unmodified	_ADPSLALD_					0	0	0		ENSG00000269190|ENST00000292852|FBXO17	ENSG00000269190|ENST00000292852|FBXO17	ENSG00000269190|ENST00000292852|FBXO17	MULTI-MATCH	A375_MHC_IP_R2	2		1	801.398875	800.391599	-0.96119	-0.0007703	0.18385	0.00014734	-0.77734	-0.00062296	801.3989638996661	30.258	0.45657	30.976	30.809	31.266	0.71857	0.054593	0.00010598	NaN	12.532	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1574800			498	9979	353	356							-0.01658158673228627
ADPSPQNRS	9	Unmodified	_ADPSPQNRS_					0	0	0			REV__ENSG00000151690|ENST00000392328|MFSD6	REV__ENSG00000151690|ENST00000392328|MFSD6	MSMS	A375_MHC_IP_R2	2	486.13079833984375	2	486.230687	970.446822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.429	1	29.107	28.607	29.607	0.67857								0	0	0	0.15486	1	9813	9813		13.042	0.51092	1		+		499	19766	354	357	479	479					-0.03958352152756106
ADQLGKLF	8	Unmodified	_ADQLGKLF_					0	0	0			REV__nc|ENSG00000140688|Q96GQ5-2|RUSF1	REV__nc|ENSG00000140688|Q96GQ5-2|RUSF1	MULTI-SECPEP	A375_MHC_IP_R2	2	445.7129821777344	2	446.25036	890.486168	-0.64985	-0.00028999	-1.0682	-0.00047669	-1.7181	-0.00076669	446.2498787204496	54.204	0.60751	54.955	54.712	55.32	0.75075					16	11	2	0	0	0	0.93661	1	20458	20458		15.847	0	1	1419100	+		500	19227	355	358	480	480					0.03654399868742075
ADRQVHIY	8	Unmodified	_ADRQVHIY_					0	0	0			REV__ENSG00000165805|ENST00000298699|C12orf50	REV__ENSG00000165805|ENST00000298699|C12orf50	MULTI-SECPEP	A375_MHC_IP_R1	1	501.1982116699219	2	501.261791	1000.50903	-0.62221	-0.00031189	-0.15084	-7.5612E-05	-0.77306	-0.0003875	501.2617834624325	23.965	0.20359	23.965	23.838	24.042	0					5	3	2	0	0	0	0.94587	1	6711	6711		10.074	0	1	2966600	+		501	20623	356	359	481	481					0.008794189862328494
ADRRGKQLPR	10	Unmodified	_ADRRGKQLPR_					0	0	0		nc|ENSG00000142606|Q495T6-2|MMEL1;nc|ENSG00000142606|Q495T6-3|MMEL1;ENSG00000142606|ENST00000378412|MMEL1	nc|ENSG00000142606|Q495T6-2|MMEL1	nc|ENSG00000142606|Q495T6-2|MMEL1	MSMS	A375_MHC_IP_R1	1	399.589111328125	3	399.570539	1195.68979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.215	1	20.215	19.715	20.715	0								0	0	0	0.15465	1	5154	5154		3.0723	0	1				502	5315	357	360	482	482					0.09976937362944227
ADSFHLQQFS	10	Unmodified	_ADSFHLQQFS_					0	0	0		SPTAN1|p.F579S|1|0.29|ENSG00000197694|chr9:128582779-128582779|T/C|missense_variant	SPTAN1|p.F579S|1|0.29|ENSG00000197694|chr9:128582779-128582779|T/C|missense_variant	SPTAN1|p.F579S|1|0.29|ENSG00000197694|chr9:128582779-128582779|T/C|missense_variant	MSMS	A375_MHC_IP_R1	1	590.2240600585938	2	590.275095	1178.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.698	1	60.698	60.198	61.198	0								0	0	0	0.15288	1	21858	21858		11.495	0	1				503	29243	358	361	483	483					-0.04648936913099533
ADSGYYVMH	9	Unmodified	_ADSGYYVMH_					0	0	0			REV__chrX:9725840-9741338|249|48.47|0.04|10.12|-|2|GPR143,GPR143|1	REV__chrX:9725840-9741338|249|48.47|0.04|10.12|-|2|GPR143,GPR143|1	MSMS	A375_MHC_IP_R2	2	521.6602783203125	2	521.718567	1041.42258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.639	1	26.299	25.799	26.799	0.65992								0	0	0	0.15486	1	8590	8590		7.9102	3.1541	1		+		504	15784	359	362	484	484					-0.09647328630626362
ADSLLSLWE	9	Unmodified	_ADSLLSLWE_					0	0	0			REV__ENSG00000139641|ENST00000394048|ESYT1	REV__ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	A375_MHC_IP_R2	2	517.6632080078125	2	517.263665	1032.51278	-0.68457	-0.00035411	0.020571	1.0641E-05	-0.664	-0.00034346	517.2635302260188	104.75	1.3222	105.51	105.16	106.48	0.76308					59	25	3	0	0	0	0.46038	1	39790	39790		21.747	1.293	1	17771000	+		505	19171	360	363	485	485					-0.0021795603054215462
ADSMLSFSLTT	11	Unmodified	_ADSMLSFSLTT_					0	0	0		nc|ENSG00000165186|Q96NR3-2|PTCHD1;ENSG00000165186|ENST00000379361|PTCHD1	nc|ENSG00000165186|Q96NR3-2|PTCHD1	nc|ENSG00000165186|Q96NR3-2|PTCHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	587.1780395507812	2	586.778822	1171.54309	-0.29265	-0.00017172	-0.078902	-4.6298E-05	-0.37155	-0.00021802	586.7787356405846	60.821	0.40691	60.821	60.566	60.973	0					12	7	2	0	0	0	0.4173	1	21889	21889		51.63	18.844	1	1948700			506	6924	361	364	486	486					-0.03581965427702016
ADSMLSFSLTT	11	Unmodified	_ADSMLSFSLTT_					0	0	0		nc|ENSG00000165186|Q96NR3-2|PTCHD1;ENSG00000165186|ENST00000379361|PTCHD1	nc|ENSG00000165186|Q96NR3-2|PTCHD1	nc|ENSG00000165186|Q96NR3-2|PTCHD1	MULTI-SECPEP	A375_MHC_IP_R2	2	587.177978515625	2	586.778822	1171.54309	-0.90068	-0.0005285	-0.26714	-0.00015675	-1.1678	-0.00068525	586.7781368120362	59.992	0.70815	60.74	60.249	60.957	0.74714					18	13	2	0	0	0	0.80621	1	22712	22712		31.268	13.122	1	1898300			507	6924	361	364	487	487					-0.03581965427702016
ADSSFINTI	9	Unmodified	_ADSSFINTI_					0	0	0			REV__SMAP1|p.S140F|1|0.27|ENSG00000112305|chr6:70791693-70791693|C/T|missense_variant	REV__SMAP1|p.S140F|1|0.27|ENSG00000112305|chr6:70791693-70791693|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	484.166259765625	2	484.24019	966.465826	-0.6195	-0.00029999	-0.3719	-0.00018009	-0.99139	-0.00048007	484.2397442445417	31.417	0.35748	32.135	31.974	32.332	0.71857					8	6	2	0	0	0	0.35581	1	11078	11078		26.884	4.1474	1	1589900	+		508	28013	362	365	488	488					-0.018748155817092993
ADTATVKCI	9	Unmodified	_ADTATVKCI_					0	0	0			REV__ENSG00000086570|ENST00000261800|FAT2	REV__ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	A375_MHC_IP_R1	1	461.157958984375	2	461.239135	920.463718	-0.16727	-7.7152E-05	0.8506	0.00039233	0.68333	0.00031518	461.23946659550825	70.852	0.51154	70.852	70.545	71.057	0					14	9	2	0	0	0	0.73363	1	25808	25808		15.847	5.7733	1	1296600	+		509	16857	363	366	489	489					0.0003043240881197562
ADTATVKCI	9	Unmodified	_ADTATVKCI_					0	0	0			REV__ENSG00000086570|ENST00000261800|FAT2	REV__ENSG00000086570|ENST00000261800|FAT2	MULTI-MATCH	A375_MHC_IP_R2	2		2	461.239135	920.463718	-0.39504	-0.00018221	0.88879	0.00040995	0.49375	0.00022774	461.23950031317344	70.024	0.45708	70.758	70.54	70.997	0.73421	-0.046863	2.6654E-05	NaN	15.847	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1161200	+		510	16857	363	366							0.0003043240881197562
ADTGSSAC	8	Unmodified	_ADTGSSAC_					0	0	0		ENSG00000158008|ENST00000374280|EXTL1;ENST00000484339.1_1_1:26349695-26357853:+|nuORF	ENSG00000158008|ENST00000374280|EXTL1	ENSG00000158008|ENST00000374280|EXTL1	MULTI-SECPEP	A375_MHC_IP_R2	2	710.9931030273438	1	711.261395	710.254119	-0.72756	-0.00051749	-1.0959	-0.00077945	-1.8234	-0.0012969	711.2649724671093	123.96	0.25389	124.29	124.19	124.44	0.32969					7	4	2	0	0	0	0.972	1	47797	47797		0	0	1	4809000			511	6281	364	367	490	490					-0.11259810544311222
ADTIDLGALRF	11	Unmodified	_ADTIDLGALRF_					0	0	0			REV__nc|ENSG00000173120|Q9Y2K7-2|KDM2A	REV__nc|ENSG00000173120|Q9Y2K7-2|KDM2A	MULTI-MSMS	A375_MHC_IP_R2	2	397.93975830078125	3	397.883789	1190.62954	-0.14743	-5.866E-05	-2.1897	-0.00087126	-2.3372	-0.00092992	397.8829294269623	32.686	0.25314	33.423	33.265	33.518	0.73691					6	4	2	0	0	0	0.72649	1	11657	11657		6.6235	0	1	1131500	+		512	21195	365	368	491	491					0.041847821891678905
ADTQFLCKY	9	Unmodified	_ADTQFLCKY_					0	0	0			REV__ENST00000372084.5_1_1:45923287-45923344:-|nuORF	REV__ENST00000372084.5_1_1:45923287-45923344:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	544.6998291015625	2	544.757692	1087.50083	-0.50661	-0.00027598	0.36943	0.00020125	-0.13718	-7.473E-05	544.7578191536285	53.566	0.50937	53.566	53.352	53.861	0					15	9	2	0	0	0	0.63811	1	19107	19107		12.532	0	1	3671200	+		513	24057	366	369	492	492					-0.039418960453986074
ADTSHVVPEF	10	Unmodified	_ADTSHVVPEF_					0	0	0			REV__ENSG00000154175|ENST00000471714|ABI3BP	REV__ENSG00000154175|ENST00000471714|ABI3BP	MULTI-SECPEP	A375_MHC_IP_R1	1	551.14794921875	2	551.264196	1100.51384	-0.55992	-0.00030867	-0.11182	-6.1643E-05	-0.67175	-0.00037031	551.2642141438632	53.449	0.50774	53.449	53.148	53.656	0					15	9	2	0	0	0	0.74754	1	19052	19052		29.082	3.6823	1	1977500	+		514	19868	367	370	493	493					-0.03239741661673179
ADTSLDWESYD	11	Unmodified	_ADTSLDWESYD_					0	0	0			REV__nc|ENSG00000103042|Q9NVC3-2|SLC38A7	REV__nc|ENSG00000103042|Q9NVC3-2|SLC38A7	MULTI-MSMS	A375_MHC_IP_R2	2	651.2537841796875	2	651.262047	1300.50954	-0.6675	-0.00043472	0.22682	0.00014772	-0.44068	-0.000287	651.261909753583	42.957	0.55606	43.729	43.421	43.977	0.7724					17	10	2	0	0	0	0.7342	1	16018	16018		4.897	0.36815	1	2284700	+		515	17247	368	371	494	494					-0.1286929566588242
ADTTLDESIY	10	Unmodified	_ADTTLDESIY_					0	0	0		ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	MULTI-MSMS	A375_MHC_IP_R2	2	564.6580200195312	2	564.258776	1126.503	-0.51146	-0.0002886	-0.53031	-0.00029923	-1.0418	-0.00058783	564.25824030548	106.14	1.9333	106.9	105.97	107.9	0.75977					65	37	4	0	0	0	0.33603	1	40074	40074		37.974	7.3375	1	10210000			516	8532	369	372	495	495					-0.05519188826588106
ADTYAGRPLPS	11	Unmodified	_ADTYAGRPLPS_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-SECPEP	A375_MHC_IP_R2	2	574.689453125	2	574.290745	1146.56694	-0.62383	-0.00035826	-0.8439	-0.00048464	-1.4677	-0.0008429	574.2901380424688	59.169	0.70884	59.916	59.54	60.249	0.74714					26	13	3	0	0	0	0.79027	1	22379	22379		27.223	27.223	1	4955000			517	2311	370	373	496	496					-0.00048363879000135057
ADVDPHQFP	9	Unmodified	_ADVDPHQFP_					0	0	0		ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-3|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	MULTI-MSMS	A375_MHC_IP_R1	1	513.6375732421875	2	513.237981	1024.46141	-0.30987	-0.00015904	-0.38603	-0.00019813	-0.6959	-0.00035716	513.2378753109938	35.547	1.2223	35.547	35.167	36.389	0					38	23	3	0	0	0	0.38603	1	11817	11817		25.399	25.399	1	7273900			518	8043	371	374	497	497					-0.049842800046235425
ADVPVGLSFVG	11	Unmodified	_ADVPVGLSFVG_					0	0	0			REV__nc|ENSG00000136636|Q9Y597-2|KCTD3	REV__nc|ENSG00000136636|Q9Y597-2|KCTD3	MULTI-MSMS	A375_MHC_IP_R1	1	531.18701171875	2	530.787307	1059.56006	-0.75519	-0.00040084	-0.22827	-0.00012116	-0.98346	-0.00052201	530.7874513769594	80.611	0.81152	80.611	80.187	80.999	0					22	11	3	0	0	0	0.57844	1	29440	29440		24.991	2.2547	1	4550800	+		519	18950	372	375	498	498					0.03266323240427482
ADVTIRQSY	9	Unmodified	_ADVTIRQSY_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-SECPEP	A375_MHC_IP_R2	2	526.9534912109375	2	526.772188	1051.52982	-0.5914	-0.00031154	0.34612	0.00018233	-0.24529	-0.00012921	526.7721078952643	44.873	0.4101	45.642	45.34	45.75	0.7691					11	7	2	0	0	0	0.75164	1	16665	16665		5.7319	0	1	2998700			520	4937	373	376	499	499					0.006119645752505676
ADWIMNKY	8	Unmodified	_ADWIMNKY_					0	0	0		ENSG00000232859|ENST00000379102|LYRM9	ENSG00000232859|ENST00000379102|LYRM9	ENSG00000232859|ENST00000379102|LYRM9	MULTI-MSMS	A375_MHC_IP_R1	1	520.7001342773438	2	520.747127	1039.4797	0.074173	3.8626E-05	-1.0221	-0.00053226	-0.94794	-0.00049364	520.7464519276651	44.904	0.40419	44.904	44.676	45.081	0					11	7	2	0	0	0	0.77643	1	15639	15639		7.9102	0	1	1055600			521	9732	374	377	500	500					-0.03845861354261615
ADWNNCYY	8	Unmodified	_ADWNNCYY_					0	0	0		ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	MULTI-MSMS	A375_MHC_IP_R1	1	525.0952758789062	2	524.695092	1047.37563	-0.45737	-0.00023998	0.91957	0.00048249	0.4622	0.00024251	524.6957034464983	59.726	0.66036	59.726	59.397	60.057	0					20	12	2	0	0	0	0.77562	1	21516	21516		10.824	1.4765	1	2607900			522	1443	375	378	501	501					-0.14616188181798861
ADWNNCYY	8	Unmodified	_ADWNNCYY_					0	0	0		ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	MULTI-MSMS	A375_MHC_IP_R2	2	524.6784057617188	2	524.695092	1047.37563	-0.9075	-0.00047616	0.56306	0.00029543	-0.34445	-0.00018073	524.6954626507999	59.124	0.6079	59.871	59.54	60.148	0.74714					19	11	2	0	0	0	0.7754	1	22321	22321		11.64	2.2929	1	2538900			523	1443	375	378	502	502					-0.14616188181798861
ADWRFKNYL	9	Unmodified	_ADWRFKNYL_					0	0	0		ENST00000276682.8_1_8:117777777-117777918:-|nuORF	ENST00000276682.8_1_8:117777777-117777918:-|nuORF	ENST00000276682.8_1_8:117777777-117777918:-|nuORF	MSMS	A375_MHC_IP_R1	1	606.7263793945312	2	606.811648	1211.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.99	1	104.99	104.49	105.49	0								0	0	0	0.15468	1	38548	38548		13.906	0	1				524	10408	376	379	503	503					0.01140236600190292
ADYGDHVEL	9	Unmodified	_ADYGDHVEL_					0	0	0		CON__Q9TRI1	CON__Q9TRI1	CON__Q9TRI1	MSMS	A375_MHC_IP_R1	1	509.6844177246094	2	509.727446	1017.44034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.46	1	106.46	105.96	106.96	0								0	0	0	0.1521	1	39076	39076		18.135	5.6034	1			+	525	637	377	380	504	504					-0.06768290104139396
ADYHTNFREL	10	Unmodified	_ADYHTNFREL_					0	0	0			REV__EDEM3|p.S567Rfs*11|1|0.04|ENSG00000116406|chr1:184710538-184710539|-/CT|frameshift_variant	REV__EDEM3|p.S567Rfs*11|1|0.04|ENSG00000116406|chr1:184710538-184710539|-/CT|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	422.93536376953125	3	422.53516	1264.58365	0.17828	7.5329E-05	-0.4639	-0.00019601	-0.28562	-0.00012068	422.53499979241224	21.172	0.60992	21.172	20.742	21.352	0					25	11	3	0	0	0	0.71619	1	5505	5505		5.0475	1.451	1	1615300	+		526	16059	378	381	505	505					-0.03805862993044684
ADYRLPQV	8	Unmodified	_ADYRLPQV_					0	0	0		ENSG00000165118|ENST00000376344|C9orf64	ENSG00000165118|ENST00000376344|C9orf64	ENSG00000165118|ENST00000376344|C9orf64	MULTI-SECPEP	A375_MHC_IP_R2	2	481.65850830078125	2	481.258717	960.50288	-0.84232	-0.00040537	-0.33728	-0.00016232	-1.1796	-0.00056769	481.25865215987653	58.055	0.80977	58.804	58.427	59.237	0.74894					25	15	2	0	0	0	0.96266	1	21911	21911		11.64	0	1	5513800			527	6915	379	382	506	506					0.02104900754704886
ADYRPKELW	9	Unmodified	_ADYRPKELW_					0	0	0			REV__ENSG00000104529|ENST00000618139|EEF1D	REV__ENSG00000104529|ENST00000618139|EEF1D	MULTI-SECPEP	A375_MHC_IP_R2	2	393.63140869140625	3	393.204862	1176.59276	-0.63857	-0.00025109	1.2337	0.00048511	0.59516	0.00023402	393.54006255112034	34.025	0.30309	34.778	34.5	34.803	0.75225					7	5	2	0	0	0	0.775	1	12165	12165		10.8	4.6077	1	3959500	+		528	17326	380	383	507	507					0.01152530363265214
ADYYELDWYYE	11	Unmodified	_ADYYELDWYYE_					0	0	0		nc|ENSG00000182606|Q9UPV9-3|TRAK1	nc|ENSG00000182606|Q9UPV9-3|TRAK1	nc|ENSG00000182606|Q9UPV9-3|TRAK1	MULTI-MSMS	A375_MHC_IP_R2	2	510.450927734375	3	510.541757	1528.60344	-1.2429	-0.00063456	0.65641	0.00033512	-0.58651	-0.00029944	510.54215241470575	52.812	0.30343	53.563	53.335	53.638	0.75105					8	5	2	0	0	0	0.73807	1	19866	19866		1.2148	0.70888	1	1472000			529	14803	381	384	508	508					-0.13971576563608323
AEAAAAAKF	9	Unmodified	_AEAAAAAKF_					0	0	0		SLC3A2-GRAP2|2|fusion;nc|ENSG00000168003|P08195-5|SLC3A2;SLC3A2-GRAP2|1|fusion;SLC3A2-GRAP2|4|fusion;ENSG00000168003|ENST00000338663|SLC3A2;nc|ENSG00000168003|P08195-3|SLC3A2;SLC3A2-GRAP2|3|fusion;nc|ENSG00000168003|P08195|SLC3A2;nc|ENSG00000168003|P08195-4|SLC3A2	SLC3A2-GRAP2|2|fusion	SLC3A2-GRAP2|2|fusion	MULTI-SECPEP	A375_MHC_IP_R1	1	425.62701416015625	2	425.226885	848.439217	-0.19659	-8.3597E-05	-0.34239	-0.00014559	-0.53899	-0.00022919	425.22657581791185	27.402	0.65719	27.402	27.229	27.887	0					17	12	3	0	0	0	0.056023	1	8320	8320		75.761	41.658	1	4152800			530	14753	382	385	509	509					0.008935403176110412
AEAAATPQLL	10	Unmodified	_AEAAATPQLL_					0	0	0			REV__TNRC18|p.D1106E|1|0.5|ENSG00000182095|chr7:5371276-5371276|G/C|missense_variant	REV__TNRC18|p.D1106E|1|0.5|ENSG00000182095|chr7:5371276-5371276|G/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	493.70501708984375	2	492.771657	983.528761	-0.42267	-0.00020828	-3.3768	-0.001664	-3.7995	-0.0018723	492.77155324112965	94.189	1.0141	94.189	93.738	94.752	0					54	19	4	0	0	0	0.48529	1	34630	34630		29.082	1.4528	1	21289000	+		531	28147	383	386	510	510					0.03633750206347486
AEAAIYHLQ	9	Unmodified	_AEAAIYHLQ_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000563986.1_1_15:72494793-72499131:-|nuORF	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-SECPEP	A375_MHC_IP_R1	1	508.15338134765625	2	508.263999	1014.51345	-0.080579	-4.0955E-05	0.86568	0.00043999	0.7851	0.00039904	508.26457142798733	44.465	0.71563	44.465	44.061	44.777	0					21	13	2	0	0	0	0.4465	1	15490	15490		38.176	20.029	1	4401400			532	1434	384	387	511	511					0.006768834091303688
AEAAIYHLQ	9	Unmodified	_AEAAIYHLQ_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000563986.1_1_15:72494793-72499131:-|nuORF	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-SECPEP	A375_MHC_IP_R2	2	508.15374755859375	2	508.263999	1014.51345	-0.55544	-0.00028231	0.11112	5.648E-05	-0.44431	-0.00022583	508.2640327722358	43.667	0.45375	44.436	44.228	44.682	0.7691					16	8	2	0	0	0	0.60917	1	16263	16263		19.257	10.664	1	3985000			533	1434	384	387	512	512					0.006768834091303688
AEAAPPRPR	9	Unmodified	_AEAAPPRPR_					0	0	0			REV__ENST00000433411.7_1_17:18075070-18075721:+|nuORF	REV__ENST00000433411.7_1_17:18075070-18075721:+|nuORF	MSMS	A375_MHC_IP_R2	2	482.66619873046875	2	482.769783	963.525013	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.612	1	44.383	43.883	44.883	0.77064								0	0	0	0.15486	1	16253	16253		10.824	0.64053	1		+		534	24729	385	388	513	513					0.041791252231291764
AEAATPYGI	9	Unmodified	_AEAATPYGI_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-SECPEP	A375_MHC_IP_R1	1	447.12408447265625	2	446.724175	891.433798	0.01513	6.7588E-06	-0.14853	-6.6354E-05	-0.1334	-5.9595E-05	446.7240939306191	62.954	0.61471	62.954	62.609	63.223	0					24	11	3	0	0	0	0.07754	1	22734	22734		74.423	36.272	1	3039900			535	3317	386	389	514	514					-0.016261832648524432
AEAATPYGI	9	Unmodified	_AEAATPYGI_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-SECPEP	A375_MHC_IP_R2	2	446.4249267578125	2	446.724175	891.433798	-0.52303	-0.00023365	-0.027868	-1.2449E-05	-0.5509	-0.0002461	446.72419857003086	62.229	0.76174	62.972	62.622	63.383	0.74263					22	14	2	0	0	0	0.050875	1	23569	23569		64.236	28.192	1	1937000			536	3317	386	389	515	515					-0.016261832648524432
AEAAVPRTI	9	Unmodified	_AEAAVPRTI_					0	0	0		nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-4|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-3|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-2|NCKIPSD;ENSG00000213672|ENST00000294129|NCKIPSD	nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD	nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD	MULTI-MSMS	A375_MHC_IP_R1	1	464.6661071777344	2	464.266542	926.51853	-0.35861	-0.00016649	-0.19744	-9.1665E-05	-0.55605	-0.00025815	464.2664742327645	36.352	0.45732	36.352	36.084	36.541	0					13	8	2	0	0	0	0.32889	1	12174	12174		28.495	3.0952	1	2936200			537	9576	387	390	516	516					0.052331872717559236
AEAAVPRTI	9	Unmodified	_AEAAVPRTI_					0	0	0		nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-4|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-3|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-2|NCKIPSD;ENSG00000213672|ENST00000294129|NCKIPSD	nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD	nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD	MULTI-MSMS	A375_MHC_IP_R2	2	464.6661071777344	2	464.266542	926.51853	-0.81148	-0.00037674	1.3918	0.00064617	0.58034	0.00026943	464.26745098655584	35.595	0.60794	36.358	36.03	36.638	0.76338					16	11	2	0	0	0	0.32889	1	12912	12912		28.495	3.0952	1	3277500			538	9576	387	390	517	517					0.052331872717559236
AEADKIYSF	9	Unmodified	_AEADKIYSF_					0	0	0		ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	MULTI-MSMS	A375_MHC_IP_R1	1	522.65478515625	2	522.25584	1042.49713	-0.50963	-0.00026616	-0.19641	-0.00010258	-0.70604	-0.00036873	522.2556247092916	57.814	0.91344	57.814	57.364	58.278	0					47	17	4	0	0	0	0.095851	1	20679	20679		51.415	9.5756	1	19124000			539	8292	388	391	518	518					-0.022422425476179342
AEADKIYSF	9	Unmodified	_AEADKIYSF_					0	0	0		ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	MULTI-MSMS	A375_MHC_IP_R2	2	522.2344360351562	2	522.25584	1042.49713	-0.99017	-0.00051712	-0.37788	-0.00019735	-1.368	-0.00071447	522.2555517179171	57.089	0.86504	57.84	57.408	58.273	0.75015					44	16	4	0	0	0	0.074562	1	21660	21660		55.235	20.303	1	21986000			540	8292	388	391	519	519					-0.022422425476179342
AEADKTIKVY	10	Unmodified	_AEADKTIKVY_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-MSMS	A375_MHC_IP_R1	1	380.2765808105469	3	379.876523	1136.60774	0.21462	8.1528E-05	-0.23369	-8.8772E-05	-0.019071	-7.2445E-06	379.87634975464107	28.172	0.65491	28.172	27.937	28.592	0					20	12	3	0	0	0	0.59998	1	8695	8695		20.871	4.5966	1	3936900			541	7617	389	392	520	520					0.04489977440630355
AEADKTIKVY	10	Unmodified	_AEADKTIKVY_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-SECPEP	A375_MHC_IP_R1	1	569.671630859375	2	569.311146	1136.60774	-0.47651	-0.00027128	0.065402	3.7234E-05	-0.4111	-0.00023405	569.311040632074	28.196	0.25137	28.196	27.987	28.238	0					7	4	2	0	0	0	0.57412	1	8622	8622		43.982	18.991	1	1679600			542	7617	389	392	521	521					0.04489977440630355
AEADKTIKVY	10	Unmodified	_AEADKTIKVY_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-SECPEP	A375_MHC_IP_R2	2	569.6709594726562	2	569.311146	1136.60774	-0.2851	-0.00016231	-0.89051	-0.00050698	-1.1756	-0.00066928	569.3110774085351	27.529	0.30309	28.208	28.098	28.401	0.67857					8	5	2	0	0	0	0.11184	1	9422	9422		78.61	45.166	1	1926900			543	7617	389	392	522	522					0.04489977440630355
AEADKVYTF	9	Unmodified	_AEADKVYTF_					0	0	0		nc|ENSG00000168916|Q9ULD9-2|ZNF608;ENSG00000168916|ENST00000513986|ZNF608	nc|ENSG00000168916|Q9ULD9-2|ZNF608	nc|ENSG00000168916|Q9ULD9-2|ZNF608	MULTI-MSMS	A375_MHC_IP_R2	2	522.6549682617188	2	522.25584	1042.49713	-0.68448	-0.00035747	0.082833	4.326E-05	-0.60165	-0.00031421	522.2554261546737	48.771	0.5606	49.528	49.282	49.843	0.75737					17	10	2	0	0	0	0.11715	1	18347	18347		47.594	19.966	1	2451500			544	7358	390	393	523	523					-0.022422425476406715
AEADPLGRF	9	Unmodified	_AEADPLGRF_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-SECPEP	A375_MHC_IP_R1	1	488.64794921875	2	488.248349	974.482145	-0.2989	-0.00014594	-0.077613	-3.7894E-05	-0.37652	-0.00018383	488.248275786467	59.2	0.91595	59.2	58.887	59.803	0					47	17	5	0	0	0	0.05021	1	21226	21226		78.728	40.754	1	21667000			545	3889	391	394	524	524					-0.006116896249523052
AEADPLGRF	9	Unmodified	_AEADPLGRF_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-SECPEP	A375_MHC_IP_R2	2	488.6477355957031	2	488.248349	974.482145	-0.88036	-0.00042984	0.022507	1.0989E-05	-0.85786	-0.00041885	488.2483353868563	58.355	1.016	59.104	58.779	59.795	0.74894					54	19	5	0	0	0	0.04038	1	22022	22022		75.761	43.455	1	30815000			546	3889	391	394	525	525					-0.006116896249523052
AEAEAVREVY	10	Unmodified	_AEAEAVREVY_					0	0	0		CRNKL1|p.L672*|1|0.43|ENSG00000101343|chr20:20039622-20039622|A/-|frameshift_variant;ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	CRNKL1|p.L672*|1|0.43|ENSG00000101343|chr20:20039622-20039622|A/-|frameshift_variant	CRNKL1|p.L672*|1|0.43|ENSG00000101343|chr20:20039622-20039622|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	569.1827392578125	2	568.782753	1135.55095	-0.23134	-0.00013158	0.65602	0.00037313	0.42468	0.00024155	568.782793445811	35.147	0.71217	35.147	34.81	35.522	0					32	13	4	0	0	0	0.1946	1	11641	11641		97.741	48.187	1	19204000			547	663	392	395	526	526					-0.011400701159118398
AEAEAVREVY	10	Unmodified	_AEAEAVREVY_					0	0	0		CRNKL1|p.L672*|1|0.43|ENSG00000101343|chr20:20039622-20039622|A/-|frameshift_variant;ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	CRNKL1|p.L672*|1|0.43|ENSG00000101343|chr20:20039622-20039622|A/-|frameshift_variant	CRNKL1|p.L672*|1|0.43|ENSG00000101343|chr20:20039622-20039622|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	569.1823120117188	2	568.782753	1135.55095	-0.57021	-0.00032432	0.21291	0.0001211	-0.3573	-0.00020322	568.7826562429957	34.479	0.66106	35.231	34.955	35.616	0.75225					28	12	3	0	0	0	0.098599	1	12421	12421		104.48	54.93	1	20279000			548	663	392	395	527	527					-0.011400701159118398
AEAEELKPF	9	Unmodified	_AEAEELKPF_					0	0	0		ENSG00000057252|ENST00000367619|SOAT1	ENSG00000057252|ENST00000367619|SOAT1	ENSG00000057252|ENST00000367619|SOAT1	MULTI-SECPEP	A375_MHC_IP_R2	2	517.6634521484375	2	517.263665	1032.51278	-1.2221	-0.00063214	0.66333	0.00034312	-0.55876	-0.00028903	517.2639265542026	53.729	0.46122	54.48	54.147	54.609	0.75105					13	8	2	0	0	0	0.59098	1	20321	20321		11.495	11.495	1	1887100			549	1282	393	396	528	528					-0.00217956030564892
AEAEKGSNDMA	11	Unmodified	_AEAEKGSNDMA_					0	0	0			REV__ENST00000595826.5_1_19:48010230-48018221:-|nuORF	REV__ENST00000595826.5_1_19:48010230-48018221:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	562.6663818359375	2	561.740228	1121.4659	-0.52904	-0.00029718	4.1558	0.0023345	3.6267	0.0020373	561.7416648094768	64.969	0.96622	64.969	64.343	65.309	0					32	18	3	0	0	0	0.69231	1	23490	23490		16.149	1.5674	1	4202700	+		550	26461	394	397	529	529					-0.08997183644009965
AEAEKSQLI	9	Unmodified	_AEAEKSQLI_					0	0	0		ENSG00000137312|ENST00000376389|FLOT1;nc|ENSG00000137312|O75955-2|FLOT1	ENSG00000137312|ENST00000376389|FLOT1	ENSG00000137312|ENST00000376389|FLOT1	MULTI-MSMS	A375_MHC_IP_R2	2	495.16900634765625	2	494.769114	987.523675	-0.63489	-0.00031412	0.85023	0.00042067	0.21533	0.00010654	494.7695225419617	30.099	0.35518	30.817	30.658	31.013	0.71857					11	6	2	0	0	0	0.10622	1	10598	10598		49.554	9.6046	1	1903800			551	4876	395	398	530	530					0.029414463437205995
AEAEKTFSY	9	Unmodified	_AEAEKTFSY_					0	0	0		ENSG00000196655|ENST00000533632|TRAPPC4;nc|ENSG00000196655|Q9Y296-2|TRAPPC4;ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENST00000531290.5_1_11:118889505-118889751:+|nuORF	ENSG00000196655|ENST00000533632|TRAPPC4	ENSG00000196655|ENST00000533632|TRAPPC4	MULTI-MSMS	A375_MHC_IP_R1	1	523.6451416015625	2	523.245472	1044.47639	-0.50101	-0.00026215	-0.092076	-4.8179E-05	-0.59309	-0.00031033	523.2453880131637	34.077	0.91003	34.077	33.798	34.708	0					56	17	5	0	0	0	0.0024528	2	11149	11149;11230		139.78	50.381	1	140860000			552	9070	396	399	531;532	531					-0.04406832927270443
AEAEKTFSY	9	Unmodified	_AEAEKTFSY_					0	0	0		ENSG00000196655|ENST00000533632|TRAPPC4;nc|ENSG00000196655|Q9Y296-2|TRAPPC4;ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENST00000531290.5_1_11:118889505-118889751:+|nuORF	ENSG00000196655|ENST00000533632|TRAPPC4	ENSG00000196655|ENST00000533632|TRAPPC4	MULTI-MSMS	A375_MHC_IP_R2	2	523.6448364257812	2	523.245472	1044.47639	-0.90563	-0.00047387	0.04141	2.1668E-05	-0.86422	-0.0004522	523.2454531372861	33.418	0.91301	34.17	33.84	34.753	0.75225					50	17	5	0	0	0	0.0012561	2	11908	11908;11953		151.48	51.725	1	126430000			553	9070	396	399	533;534	533					-0.04406832927270443
AEAEKVLAL	9	Unmodified	_AEAEKVLAL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R1	1	472.6765441894531	2	472.276575	942.538597	-0.41839	-0.00019759	-0.34253	-0.00016177	-0.76091	-0.00035936	472.27637179746364	57.731	1.1697	57.731	56.905	58.075	0					35	22	3	0	0	0	0.11887	1	20706	20706		71.708	16.205	1	3562300			554	14788	397	400	535	535					0.06502938211713172
AEAEPEHSF	9	Unmodified	_AEAEPEHSF_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R1	1	509.1191101074219	2	508.719621	1015.42469	-0.74189	-0.00037742	-0.10631	-5.4084E-05	-0.84821	-0.0004315	508.7195110498048	26.296	0.55827	26.296	26.118	26.677	0					28	10	4	0	0	0	0.0014061	1	7821	7821		149.99	96.162	1	23757000			555	14788	398	401	536	536					-0.08240576621176388
AEAEPEHSF	9	Unmodified	_AEAEPEHSF_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R2	2	509.11883544921875	2	508.719621	1015.42469	-1.1949	-0.00060789	0.080911	4.1161E-05	-1.114	-0.00056673	508.7196629447667	25.791	0.61184	26.45	26.245	26.857	0.65992					32	11	4	0	0	0	0.004328	1	8639	8639		136.33	88.585	1	17607000			556	14788	398	401	537	537					-0.08240576621176388
AEAEPEPEL	9	Unmodified	_AEAEPEPEL_					0	0	0		nc|ENSG00000140939|O60936|NOL3;nc|ENSG00000140939|O60936-3|NOL3;ENSG00000141696|ENST00000393928|P3H4	nc|ENSG00000140939|O60936|NOL3	nc|ENSG00000140939|O60936|NOL3	MULTI-SECPEP	A375_MHC_IP_R2	2	493.4721984863281	2	492.729655	983.444756	-0.91732	-0.00045199	0.21335	0.00010512	-0.70397	-0.00034687	492.72970615134744	52.407	0.70901	53.159	52.78	53.489	0.75225					31	13	3	0	0	0	0.010813	1	19767	19767		149.99	49.623	1	13190000			557	5268	399	402	538	538					-0.047628256812231484
AEAEQTLRF	9	Unmodified	_AEAEQTLRF_					0	0	0		nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST	nc|ENSG00000151914|Q03001|DST	nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	A375_MHC_IP_R1	1	533.171875	2	532.772188	1063.52982	-0.16605	-8.8466E-05	-0.5129	-0.00027326	-0.67895	-0.00036172	532.7719623499885	49.26	0.75984	49.26	48.882	49.642	0					36	14	3	0	0	0	0.011308	1	17398	17398		107.1	54.831	1	9945400			558	5934	400	403	539	539					0.0005996457523451681
AEAEQTLRF	9	Unmodified	_AEAEQTLRF_					0	0	0		nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST	nc|ENSG00000151914|Q03001|DST	nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	A375_MHC_IP_R2	2	533.1719360351562	2	532.772188	1063.52982	-0.71066	-0.00037862	-0.1302	-6.9367E-05	-0.84086	-0.00044799	532.772097488862	48.448	0.70954	49.205	48.879	49.588	0.75737					35	13	3	0	0	0	0.011256	1	18174	18174		121.35	55.872	1	13673000			559	5934	400	403	540	540					0.0005996457523451681
AEAESESSAQ	10	Unmodified	_AEAESESSAQ_					0	0	0			REV__ENST00000462353.1_1_1:220440980-220445697:-|nuORF	REV__ENST00000462353.1_1_1:220440980-220445697:-|nuORF	MSMS	A375_MHC_IP_R2	2	504.6795654296875	2	504.709451	1007.40435	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.372	1	53.125	52.625	53.625	0.75225								0	0	0	0.14302	1	19740	19740		28.495	1.6109	1		+		560	24988	401	404	541	541					-0.09905792071640462
AEAFGFSVIF	10	Unmodified	_AEAFGFSVIF_					0	0	0		ENST00000585629.1_1_18:58330357-58331131:+|nuORF	ENST00000585629.1_1_18:58330357-58331131:+|nuORF	ENST00000585629.1_1_18:58330357-58331131:+|nuORF	MSMS	A375_MHC_IP_R1	1	544.2105102539062	2	544.276575	1086.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.723	1	43.723	43.223	44.223	0								0	0	0	0.15158	1	15218	15218		14.838	0	1				561	13720	402	405	542	542					-0.0012106178828616976
AEAFGKIV	8	Unmodified	_AEAFGKIV_					0	0	0		nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF	nc|ENSG00000130726|Q13263-2|TRIM28	nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-SECPEP	A375_MHC_IP_R1	1	418.1395568847656	2	417.739628	833.464704	0.29426	0.00012292	-0.0040133	-1.6765E-06	0.29024	0.00012125	417.73953346286606	51.284	0.86306	51.284	50.966	51.829	0					33	16	3	0	0	0	0.22517	1	18157	18157		78.728	26.46	1	17411000			562	4272	403	406	543	543					0.041310148400384605
AEAFGKIV	8	Unmodified	_AEAFGKIV_					0	0	0		nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF	nc|ENSG00000130726|Q13263-2|TRIM28	nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-MSMS	A375_MHC_IP_R2	2	417.6480407714844	2	417.739628	833.464704	-0.21802	-9.1075E-05	0.43322	0.00018097	0.2152	8.9898E-05	417.7397121820086	50.379	0.86105	51.133	50.804	51.665	0.75406					36	16	3	0	0	0	0.30248	1	18893	18893		58.679	6.4105	1	14514000			563	4272	403	406	544	544					0.041310148400384605
AEAFLEHLW	9	Unmodified	_AEAFLEHLW_					0	0	0		nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3;nc|ENSG00000248124|Q2M238|RRN3P1;nc|ENSG00000085721|Q9NYV6-4|RRN3	nc|ENSG00000085721|Q9NYV6-3|RRN3	nc|ENSG00000085721|Q9NYV6-3|RRN3	MULTI-SECPEP	A375_MHC_IP_R1	1	558.6796875	2	558.279649	1114.54475	-0.35267	-0.00019689	4.3055	0.0024037	3.9528	0.0022068	558.2819859657271	110.42	1.1704	110.42	109.73	110.9	0					65	22	4	0	0	0	0.011358	1	40488	40488		120.45	72.105	1	14326000			564	1817	404	407	545	545					-0.007945435567535242
AEAFLNNQEY	10	Unmodified	_AEAFLNNQEY_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	A375_MHC_IP_R1	1	600.1724243164062	2	599.772385	1197.53022	-0.085349	-5.119E-05	0.7728	0.0004635	0.68745	0.00041231	599.7723436626216	70.017	1.4232	70.017	69.478	70.902	0					54	27	4	0	0	0	0.00093258	1	25378	25378		147.24	88.562	1	11652000			565	3298	405	408	546	546					-0.06064660495553653
AEAFLNNQEY	10	Unmodified	_AEAFLNNQEY_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	A375_MHC_IP_R2	2	600.70458984375	2	599.772385	1197.53022	-0.42552	-0.00025521	0.20249	0.00012145	-0.22302	-0.00013376	599.7722516158266	69.434	0.76189	70.168	69.778	70.54	0.73421					41	14	4	0	0	0	0.042457	2	26302	26302;26384		78.06	46.792	1	11416000			566	3298	405	408	547;548	547					-0.06064660495553653
AEAFVVCCF	9	Unmodified	_AEAFVVCCF_					0	0	0			REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	MSMS	A375_MHC_IP_R1	1	494.695068359375	2	494.716981	987.41941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.405	1	60.405	59.905	60.905	0								0	0	0	0.15486	1	21746	21746		13.508	1.8676	1		+		567	22759	406	409	549	549					-0.07480295008997473
AEAGAELGLY	10	Unmodified	_AEAGAELGLY_					0	0	0		ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	MULTI-SECPEP	A375_MHC_IP_R2	2	497.64752197265625	2	497.248015	992.481476	-0.46963	-0.00023352	-0.027498	-1.3673E-05	-0.49713	-0.00024719	497.24799048106365	80.04	0.65742	80.784	80.505	81.163	0.74474					25	12	3	0	0	0	0.22217	1	30355	30355		32.786	0	1	4452500			568	4781	407	410	550	550					-0.015065290646589347
AEAGAIRLA	9	Unmodified	_AEAGAIRLA_					0	0	0		MRPS9|p.Q340E|1|0.34|ENSG00000135972|chr2:105097243-105097243|C/G|missense_variant	MRPS9|p.Q340E|1|0.34|ENSG00000135972|chr2:105097243-105097243|C/G|missense_variant	MRPS9|p.Q340E|1|0.34|ENSG00000135972|chr2:105097243-105097243|C/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	436.6897888183594	2	436.253434	870.492316	-0.22418	-9.78E-05	0.15726	6.8607E-05	-0.066917	-2.9193E-05	436.2532872436984	42.2	0.51123	42.973	42.757	43.268	0.7724					14	9	2	0	0	0	0.54812	1	15689	15689		31.268	2.7815	1	1180500			569	14407	408	411	551	551					0.05188918100270712
AEAGAKISI	9	Unmodified	_AEAGAKISI_					0	0	0		ENSG00000239713|ENST00000407997|APOBEC3G	ENSG00000239713|ENST00000407997|APOBEC3G	ENSG00000239713|ENST00000407997|APOBEC3G	MULTI-SECPEP	A375_MHC_IP_R1	1	430.647705078125	2	430.247818	858.481082	-0.16454	-7.0793E-05	0.44628	0.00019201	0.28174	0.00012122	430.24782308980417	37.736	0.6641	37.736	37.351	38.016	0					21	12	3	0	0	0	0.36673	1	12734	12734		45.74	20.341	1	5333100			570	9765	409	412	552	552					0.046180960061633414
AEAGKRDFF	9	Unmodified	_AEAGKRDFF_					0	0	0		ENST00000466101.1_1_3:156877139-156877916:-|nuORF	ENST00000466101.1_1_3:156877139-156877916:-|nuORF	ENST00000466101.1_1_3:156877139-156877916:-|nuORF	MSMS	A375_MHC_IP_R2	2	520.6596069335938	2	520.761623	1039.50869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.484	1	49.241	48.741	49.741	0.75737								0	0	0	0.15486	1	18207	18207		7.9102	0	1				571	12255	410	413	553	553					-0.009480007336378549
AEAGVHLPNNR	11	Unmodified	_AEAGVHLPNNR_					0	0	0			REV__BOD1L1|p.S2975Lfs*72|1|0.17|ENSG00000038219|chr4:13576953-13576953|A/-|frameshift_variant	REV__BOD1L1|p.S2975Lfs*72|1|0.17|ENSG00000038219|chr4:13576953-13576953|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	590.8689575195312	2	589.307261	1176.59997	-0.17101	-0.00010078	-0.97607	-0.0005752	-1.1471	-0.00067598	589.3066316042336	105.89	0.81499	105.89	105.5	106.32	0					43	15	4	0	0	0	0.72649	1	38875	38875		12.241	12.241	1	11994000	+		572	15521	411	414	554	554					0.01873262963704292
AEAISGPGVGV	11	Unmodified	_AEAISGPGVGV_					0	0	0			REV__ENST00000565137.1_1_16:31498819-31499703:-|nuORF	REV__ENST00000565137.1_1_16:31498819-31499703:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	478.58355712890625	2	478.756007	955.497461	-0.45481	-0.00021774	0.70461	0.00033734	0.2498	0.00011959	478.756124966423	64.004	0.8131	64.004	63.58	64.393	0					33	15	3	0	0	0	0.59093	1	23225	23225		24.021	5.8742	1	5762700	+		573	26226	412	415	555	555					0.017931771722601297
AEAITLAERKY	11	Unmodified	_AEAITLAERKY_					0	0	0		nc|ENSG00000066455|Q8TBA6-2|GOLGA5;ENSG00000066455|ENST00000163416|GOLGA5	nc|ENSG00000066455|Q8TBA6-2|GOLGA5	nc|ENSG00000066455|Q8TBA6-2|GOLGA5	MULTI-SECPEP	A375_MHC_IP_R2	2	421.9627380371094	3	422.23471	1263.6823	-0.25437	-0.0001074	-1.9002	-0.00080233	-2.1546	-0.00090974	422.2337312139957	36.053	0.6126	36.817	36.587	37.2	0.76338					18	11	2	0	0	0	0.99089	1	13078	13078		10.016	6.6966	1	5006200			574	1412	413	416	556	556					0.06100740251986281
AEAIVPTLF	9	Unmodified	_AEAIVPTLF_					0	0	0		nc|ENSG00000163539|O75122|CLASP2;ENSG00000163539|ENST00000682230|CLASP2;nc|ENSG00000163539|O75122-3|CLASP2;nc|ENSG00000163539|O75122-2|CLASP2	nc|ENSG00000163539|O75122|CLASP2	nc|ENSG00000163539|O75122|CLASP2	MULTI-SECPEP	A375_MHC_IP_R1	1	960.9444580078125	1	960.54006	959.532783	0.45432	0.0004364	0.13057	0.00012541	0.58489	0.00056181	960.5404830065522	127.39	0.25294	127.39	127.27	127.52	0					7	4	2	0	0	0	0.059859	1	48834	48834		81.89	31.035	1	17060000			575	6681	414	417	557	557					0.05139839700052562
AEAIVPTLF	9	Unmodified	_AEAIVPTLF_					0	0	0		nc|ENSG00000163539|O75122|CLASP2;ENSG00000163539|ENST00000682230|CLASP2;nc|ENSG00000163539|O75122-3|CLASP2;nc|ENSG00000163539|O75122-2|CLASP2	nc|ENSG00000163539|O75122|CLASP2	nc|ENSG00000163539|O75122|CLASP2	MULTI-MSMS	A375_MHC_IP_R2	2	960.942626953125	1	960.54006	959.532783	-0.10737	-0.00010313	1.2084	0.0011607	1.101	0.0010575	960.5408363144427	127.07	0.35394	127.34	127.06	127.41	0.26593					8	6	2	0	0	0	0.030038	1	49772	49772		74.929	17.458	1	14133000			576	6681	414	417	558	558					0.05139839700052562
AEAKEKIYL	9	Unmodified	_AEAKEKIYL_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	A375_MHC_IP_R1	1	355.9373779296875	3	355.53773	1063.59136	-0.33396	-0.00011874	-0.21314	-7.578E-05	-0.5471	-0.00019451	355.53768985936273	30.552	0.75783	30.552	30.251	31.009	0					29	14	4	0	0	0	0.20295	1	9695	9695		37.771	12.89	1	13596000			577	4525	415	418	559	559					0.062108962745242025
AEAKEKIYL	9	Unmodified	_AEAKEKIYL_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	533.2026977539062	2	532.802957	1063.59136	-0.96479	-0.00051405	0.082061	4.3722E-05	-0.88273	-0.00047032	532.80307164158	30.532	0.60588	30.532	30.2	30.806	0					26	11	3	0	0	0	0.078179	1	9694	9694		91.085	56.153	1	14218000			578	4525	415	418	560	560					0.062108962745242025
AEAKEKIYL	9	Unmodified	_AEAKEKIYL_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	356.2718505859375	3	355.53773	1063.59136	-0.74301	-0.00026417	0.23148	8.23E-05	-0.51153	-0.00018187	355.53780561481784	29.683	0.50408	30.382	30.134	30.638	0.69872					22	9	3	0	0	0	0.11751	1	10394	10394		59.013	16.178	1	16275000			579	4525	415	418	561	561					0.062108962745242025
AEAKEKIYL	9	Unmodified	_AEAKEKIYL_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	533.2025146484375	2	532.802957	1063.59136	-1.2446	-0.00066315	0.74033	0.00039445	-0.50432	-0.0002687	532.8031077970994	29.713	0.50408	30.412	30.134	30.638	0.69872					27	9	4	0	0	0	0.12938	1	10398	10398		87.258	52.326	1	16091000			580	4525	415	418	562	562					0.062108962745242025
AEAKMLEKY	9	Unmodified	_AEAKMLEKY_					0	0	0		ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	MULTI-SECPEP	A375_MHC_IP_R2	2	541.1402587890625	2	541.781167	1081.54778	-1.2514	-0.00067799	-0.26553	-0.00014386	-1.5169	-0.00082185	542.2823914949864	26.237	0.45705	26.897	26.551	27.008	0.65992					14	8	2	0	0	0	0.61758	1	8766	8766		27.223	4.487	1	1623200			581	7217	416	419	563	563					0.01026963505751155
AEAKYIEK	8	Unmodified	_AEAKYIEK_					0	0	0		ENSG00000225968|ENST00000424383|ELFN1	ENSG00000225968|ENST00000424383|ELFN1	ENSG00000225968|ENST00000424383|ELFN1	MULTI-SECPEP	A375_MHC_IP_R2	2	476.67645263671875	2	476.260925	950.507297	-0.75978	-0.00036185	0.39379	0.00018755	-0.36598	-0.0001743	476.2609630372506	35.14	0.80765	35.903	35.525	36.333	0.76338					43	15	4	0	0	0	0.94587	1	12857	12857		20.454	1.1966	1	45558000			582	9701	417	420	564	564					0.030063651776117695
AEALAAAQQHF	11	Unmodified	_AEALAAAQQHF_					0	0	0		nc|ENSG00000136824|O95347-2|SMC2;ENSG00000136824|ENST00000374793|SMC2	nc|ENSG00000136824|O95347-2|SMC2	nc|ENSG00000136824|O95347-2|SMC2	MULTI-SECPEP	A375_MHC_IP_R2	2	579.1902465820312	2	578.790912	1155.56727	-0.32395	-0.0001875	-2.4767	-0.0014335	-2.8006	-0.001621	578.7902706193611	45.129	0.40598	45.896	45.644	46.05	0.76736					12	7	2	0	0	0	0.69831	1	16890	16890		40.239	24.991	1	1893600			583	4822	418	421	565	565					-0.004289441591481591
AEALAAAQQHF	11	Unmodified	_AEALAAAQQHF_					0	0	0		nc|ENSG00000136824|O95347-2|SMC2;ENSG00000136824|ENST00000374793|SMC2	nc|ENSG00000136824|O95347-2|SMC2	nc|ENSG00000136824|O95347-2|SMC2	MULTI-MATCH	A375_MHC_IP_R1	1		2	578.790912	1155.56727	-0.060736	-3.5153E-05	-2.2837	-0.0013218	-2.3444	-0.0013569	578.7904226173423	45.872	0.35614	45.872	45.687	46.043	0	-0.012087	0.00010799	NaN	40.239	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2103100			584	4822	418	421							-0.004289441591481591
AEALATHIL	9	Unmodified	_AEALATHIL_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	MULTI-SECPEP	A375_MHC_IP_R1	1	470.1685485839844	2	469.768917	937.523281	-0.24406	-0.00011465	0.30008	0.00014097	0.056018	2.6315E-05	469.76893231739825	62.722	0.61443	62.722	62.403	63.018	0					25	11	3	0	0	0	0.030624	1	22638	22638		88.904	58.679	1	5839700			585	1078	419	422	566	566					0.052020714145328384
AEALATHIL	9	Unmodified	_AEALATHIL_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	MULTI-SECPEP	A375_MHC_IP_R2	2	470.1682434082031	2	469.768917	937.523281	-0.90521	-0.00042524	0.062366	2.9298E-05	-0.84285	-0.00039594	469.76887828375595	61.797	0.60399	62.54	62.17	62.774	0.74263					24	11	3	0	0	0	0.037185	1	23399	23399		74.929	54.475	1	6390600			586	1078	419	422	567	567					0.052020714145328384
AEALEKLFL	9	Unmodified	_AEALEKLFL_					0	0	0		ENSG00000141867|ENST00000679869|BRD4;nc|ENSG00000141867|O60885-2|BRD4;nc|ENSG00000141867|O60885-3|BRD4	ENSG00000141867|ENST00000679869|BRD4	ENSG00000141867|ENST00000679869|BRD4	MULTI-MSMS	A375_MHC_IP_R1	1	517.7000732421875	2	517.30005	1032.58555	-0.47601	-0.00024624	-0.077928	-4.0312E-05	-0.55394	-0.00028655	517.2998726540402	101.97	1.8764	101.97	101.65	103.52	0					88	36	4	0	0	0	0.073067	1	37627	37627		55.503	13.547	1	23469000			587	5275	420	423	568	568					0.07055797762859584
AEALELHDY	9	Unmodified	_AEALELHDY_					0	0	0		nc|ENSG00000169925|Q15059-2|BRD3;ENSG00000169925|ENST00000303407|BRD3	nc|ENSG00000169925|Q15059-2|BRD3	nc|ENSG00000169925|Q15059-2|BRD3	MSMS	A375_MHC_IP_R1	1	531.15185546875	2	530.750921	1059.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.078	1	51.078	50.578	51.578	0								0	0	0	0.041892	1	18118	18118		56.177	14.221	1				588	7453	421	424	569	569					-0.04007430552974256
AEALELHDY	9	Unmodified	_AEALELHDY_					0	0	0		nc|ENSG00000169925|Q15059-2|BRD3;ENSG00000169925|ENST00000303407|BRD3	nc|ENSG00000169925|Q15059-2|BRD3	nc|ENSG00000169925|Q15059-2|BRD3	MULTI-SECPEP	A375_MHC_IP_R2	2	531.1507568359375	2	530.750921	1059.48729	-0.79443	-0.00042164	3.4654	0.0018393	2.671	0.0014176	530.7522685538595	50.398	0.81061	51.152	50.753	51.564	0.75406					23	15	2	0	0	0	0.3213	1	18974	18974		46.021	13.715	1	2062200			589	7453	421	424	570	570					-0.04007430552974256
AEALERMFL	9	Unmodified	_AEALERMFL_					0	0	0		CON__P01966;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	CON__P01966;ENSG00000206172|ENST00000320868|HBA1	CON__P01966	MULTI-MSMS	A375_MHC_IP_R1	1	540.6812133789062	2	540.281334	1078.54812	-0.52913	-0.00028588	0.8675	0.00046869	0.33836	0.00018281	540.2816180502213	93.407	0.71463	93.407	93.023	93.738	0					20	13	2	0	0	0	0.033808	1	34337	34337		71.708	35.664	1	3674900		+	590	579;8913	422	425	571	571					0.011983832255964444
AEALERMFL	9	Unmodified	_AEALERMFL_					0	0	0		CON__P01966;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	CON__P01966;ENSG00000206172|ENST00000320868|HBA1	CON__P01966	MULTI-SECPEP	A375_MHC_IP_R2	2	540.6815185546875	2	540.281334	1078.54812	-0.76868	-0.0004153	0.6875	0.00037144	-0.081181	-4.3861E-05	540.2813940644498	92.52	0.75902	93.259	92.937	93.696	0.73901					32	14	3	0	0	0	0.26374	1	35192	35192		55.235	26.748	1	3502100		+	591	579;8913	422	425	572	572					0.011983832255964444
AEALGASIWTV	11	Unmodified	_AEALGASIWTV_					0	0	0			REV__ENSG00000167196|ENST00000308275|FBXO22	REV__ENSG00000167196|ENST00000308275|FBXO22	MULTI-MSMS	A375_MHC_IP_R1	1	559.6685180664062	2	559.298039	1116.58152	-0.66992	-0.00037468	-0.60385	-0.00033773	-1.2738	-0.00071242	559.297870747074	28.777	1.5163	28.777	27.937	29.453	0					62	29	3	0	0	0	0.60747	1	8579	8579		22.736	3.4793	1	3182100	+		592	20738	423	426	573	573					0.027897082691197284
AEALIELAEEL	11	Unmodified	_AEALIELAEEL_					0	0	0			REV__ENST00000492321.5_1_7:44118242-44122109:-|nuORF	REV__ENST00000492321.5_1_7:44118242-44122109:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	400.93475341796875	3	400.883455	1199.62853	-0.61975	-0.00024845	0.95807	0.00038408	0.33832	0.00013563	400.8836050820885	26.577	0.55636	26.577	26.322	26.878	0					16	10	2	0	0	0	0.73195	1	7858	7858		7.0371	0.41363	1	2537000	+		593	25409	424	427	574	574					0.03670523029609285
AEALIELAEEL	11	Unmodified	_AEALIELAEEL_					0	0	0			REV__ENST00000492321.5_1_7:44118242-44122109:-|nuORF	REV__ENST00000492321.5_1_7:44118242-44122109:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	400.883455	1199.62853	-0.61975	-0.00024845	0.95807	0.00038408	0.33832	0.00013563	400.8836050820885	26.577	0.55636	26.577	26.322	26.878	0	0.045751	0.00012544	NaN	7.0371	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2537000	+		594	25409	424	427							0.03670523029609285
AEALIELAEEL	11	Unmodified	_AEALIELAEEL_					0	0	0			REV__ENST00000492321.5_1_7:44118242-44122109:-|nuORF	REV__ENST00000492321.5_1_7:44118242-44122109:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	400.883455	1199.62853	-0.47201	-0.00018922	0.65307	0.00026181	0.18106	7.2585E-05	400.88372448907165	25.825	0.50887	26.485	26.245	26.754	0.65992	-0.045751	-0.00024137	NaN	7.0371	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1674900	+		595	25409	424	427							0.03670523029609285
AEALLHPFF	9	Unmodified	_AEALLHPFF_					0	0	0		ENST00000568232.1_1_15:74921900-74922221:+|nuORF;ENST00000569406.5_1_15:74914809-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3	ENST00000568232.1_1_15:74921900-74922221:+|nuORF	ENST00000568232.1_1_15:74921900-74922221:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1795654296875	2	522.779285	1043.54402	-0.63931	-0.00033422	1.12	0.00058551	0.48068	0.00025129	522.779918054577	107.25	0.50725	108.01	107.74	108.25	0.75436					12	9	2	0	0	0	0.068175	1	40538	40538		63.563	38.889	1	1254300			596	8222	425	428	575	575					0.023986617941773147
AEALPELKEY	10	Unmodified	_AEALPELKEY_					0	0	0			REV__tr|U7T6G7|U7T6G7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00229PE=4SV=1	REV__tr|U7T6G7|U7T6G7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00229PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	388.6262512207031	3	388.204528	1161.59175	-0.30227	-0.00011734	0.20004	7.7657E-05	-0.10223	-3.9688E-05	388.2045306231858	33.114	0.66261	33.866	33.584	34.247	0.75225					18	12	2	0	0	0	0.52647	1	11824	11824		30.354	20.59	1	5302600	+		597	28860	426	429	576	576					0.0174227120373871
AEALPKQSV	9	Unmodified	_AEALPKQSV_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	A375_MHC_IP_R1	1	472.27459716796875	2	471.766374	941.518196	-0.71894	-0.00033917	0.043528	2.0535E-05	-0.67541	-0.00031864	471.76634863330116	26.697	1.3618	26.697	26.373	27.735	0					66	26	4	0	0	0	0.0012561	1	8050	8050		151.48	62.079	1	201500000			598	5578	427	430	577	577					0.04509767551905952
AEALPKQSV	9	Unmodified	_AEALPKQSV_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-SECPEP	A375_MHC_IP_R2	2	472.16595458984375	2	471.766374	941.518196	-0.99533	-0.00046956	0.19613	9.253E-05	-0.79919	-0.00037703	471.76644463785277	26.118	1.4269	26.778	26.5	27.927	0.65992					61	27	4	0	0	0	0.0016277	1	8757	8757		176.43	65.752	1	217290000			599	5578	427	430	578	578					0.04509767551905952
AEALPRPNW	9	Unmodified	_AEALPRPNW_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-SECPEP	A375_MHC_IP_R1	1	527.6773681640625	2	527.277441	1052.54033	-0.51409	-0.00027107	0.90035	0.00047473	0.38626	0.00020367	527.2778667240481	60.477	0.50898	60.477	60.109	60.618	0					20	9	3	0	0	0	0.27742	1	21768	21768		51.63	26.23	1	2700200			600	1613	428	431	579	579					0.016159920203108413
AEALVSKGL	9	Unmodified	_AEALVSKGL_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	A375_MHC_IP_R1	1	444.6634216308594	2	444.263468	886.512382	-0.011695	-5.1957E-06	-0.070745	-3.1429E-05	-0.08244	-3.6625E-05	444.2633769785335	40.377	0.71232	40.377	40.1	40.813	0					31	13	3	0	0	0	0.04699	1	13829	13829		65.474	15.919	1	45043000			601	9124	429	432	580	580					0.06458669040239329
AEALVSKGL	9	Unmodified	_AEALVSKGL_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	A375_MHC_IP_R2	2	444.66339111328125	2	444.263468	886.512382	-0.41879	-0.00018605	0.26206	0.00011642	-0.15673	-6.9629E-05	444.2635133707088	39.471	0.65984	40.245	40.016	40.676	0.77451					38	12	5	0	0	0	0.04699	1	14557	14557		65.474	19.774	1	43594000			602	9124	429	432	581	581					0.06458669040239329
AEALWAEY	8	Unmodified	_AEALWAEY_					0	0	0			REV__nc|ENSG00000125733|Q15642-4|TRIP10	REV__nc|ENSG00000125733|Q15642-4|TRIP10	MSMS	A375_MHC_IP_R1	1	476.6606140136719	2	476.724175	951.433798	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.811	1	35.811	35.311	36.311	0								0	0	0	0.16876	1	11939	11939		13.508	0.97634	1		+		603	18357	430	433	582	582					-0.04386183264864485
AEAMVKVGDY	10	Unmodified	_AEAMVKVGDY_					0	0	0			REV__nc|ENSG00000155511|P42261-3|GRIA1	REV__nc|ENSG00000155511|P42261-3|GRIA1	MSMS	A375_MHC_IP_R1	1	541.6631469726562	2	541.762975	1081.5114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.691	1	58.691	58.191	59.191	0								0	0	0	0.14925	1	21087	21087		19.257	2.1441	1		+		604	19926	431	434	583	583					-0.026099133909610828
AEANHFIDL	9	Unmodified	_AEANHFIDL_					0	0	0		nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-3|OGT	nc|ENSG00000147162|O15294-3|OGT	MULTI-SECPEP	A375_MHC_IP_R1	1	515.6533203125	2	515.253631	1028.49271	-0.1635	-8.4243E-05	0.15725	8.1023E-05	-0.0062492	-3.2199E-06	515.2535888516528	69.146	0.55779	69.146	68.869	69.427	0					28	10	4	0	0	0	0.20059	1	25087	25087		59.368	19.411	1	7906200			605	5664	432	435	584	584					-0.020397069705268223
AEANHFIDL	9	Unmodified	_AEANHFIDL_					0	0	0		nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-3|OGT	nc|ENSG00000147162|O15294-3|OGT	MULTI-MSMS	A375_MHC_IP_R2	2	515.9278564453125	2	515.253631	1028.49271	-0.65042	-0.00033513	0.34113	0.00017577	-0.30929	-0.00015936	515.2537292187665	68.31	0.71198	69.045	68.611	69.323	0.73511					25	13	3	0	0	0	0.020087	1	25806	25806		83.429	41.589	1	8142100			606	5664	432	435	585	585					-0.020397069705268223
AEAPAGPAL	9	Unmodified	_AEAPAGPAL_					0	0	0		ENSG00000074356|ENST00000389005|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	MULTI-MSMS	A375_MHC_IP_R2	2	797.3079833984375	1	796.419945	795.412668	-0.84731	-0.00067482	0.20426	0.00016268	-0.64305	-0.00051214	796.4200018734958	48.096	0.90669	48.858	48.48	49.387	0.76128					36	17	3	0	0	0	0.0070665	1	18066	18066		131.3	21.668	1	28245000			607	1582	433	436	586	586					0.006778514262919089
AEAPAGPAL	9	Unmodified	_AEAPAGPAL_					0	0	0		ENSG00000074356|ENST00000389005|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	MULTI-SECPEP	A375_MHC_IP_R2	2	399.11346435546875	2	398.713611	795.412668	0.018143	7.2339E-06	-0.013253	-5.2843E-06	0.0048898	1.9496E-06	398.71355148017665	48.096	0.65334	48.858	48.582	49.235	0.76128					20	12	2	0	0	0	0.016207	1	18046	18046		109.63	31.645	1	5159800			608	1582	433	436	587	587					0.006778514262919089
AEAPAGPAL	9	Unmodified	_AEAPAGPAL_					0	0	0		ENSG00000074356|ENST00000389005|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	MULTI-MATCH	A375_MHC_IP_R1	1		1	796.419945	795.412668	0.043743	3.4838E-05	-0.34157	-0.00027203	-0.29782	-0.00023719	796.4195659910022	48.852	0.86115	48.852	48.526	49.387	0	-0.0029289	-0.00022936	NaN	131.3	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22722000			609	1582	433	436							0.006778514262919089
AEAPGGELMGY	11	Oxidation (M)	_AEAPGGELM(Oxidation (M))GY_		AEAPGGELM(1)GY		AEAPGGELM(58)GY	0	0	1		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-MSMS	A375_MHC_IP_R1	1	555.197998046875	2	555.742239	1109.46993	-0.37868	-0.00021045	-0.47574	-0.00026439	-0.85442	-0.00047483	555.7425916042898	54.103	1.2661	54.103	53.505	54.771	0					51	23	3	0	0	0	0.17205	1	19382	19382		57.722	40.609	1	8871800			610	7796	434	437	588	588		388			-0.08043094150298202
AEAPGGELMGY	11	Oxidation (M)	_AEAPGGELM(Oxidation (M))GY_		AEAPGGELM(1)GY		AEAPGGELM(52)GY	0	0	1		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-MSMS	A375_MHC_IP_R2	2	555.1983642578125	2	555.742239	1109.46993	-1.2953	-0.00071984	0.30799	0.00017117	-0.98728	-0.00054867	555.7426959042311	53.553	1.1264	54.304	53.688	54.815	0.75105					52	21	4	0	0	0	0.23666	1	20163	20163		51.63	33.483	1	11162000			611	7796	434	437	589	589		388			-0.08043094150298202
AEAPGGELMGY	11	Unmodified	_AEAPGGELMGY_					0	0	0		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-MSMS	A375_MHC_IP_R1	1	548.6763916015625	2	547.744782	1093.47501	-0.62285	-0.00034116	-0.22071	-0.00012089	-0.84355	-0.00046205	547.744559135741	76.849	1.2685	76.849	76.117	77.386	0					35	24	3	0	0	0	0.72565	1	28043	28043		13.042	2.2185	1	4943800			612	7796	434	438	590	590					-0.06798790287689371
AEAPGGELMGY	11	Unmodified	_AEAPGGELMGY_					0	0	0		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-MSMS	A375_MHC_IP_R2	2	548.1444702148438	2	547.744782	1093.47501	-0.7753	-0.00042467	-0.073887	-4.0471E-05	-0.84919	-0.00046514	547.7446874922011	76.182	0.91396	76.922	76.487	77.401	0.74052					34	17	3	0	0	0	0.51633	1	28908	28908		29.841	13.691	1	5988400			613	7796	434	438	591	591					-0.06798790287689371
AEAPPPQKRYY	11	Unmodified	_AEAPPPQKRYY_					0	0	0		ENST00000549773.1_1_12:58164850-58165866:-|nuORF;ENST00000548681.1_1_12:58164719-58165893:-|nuORF;nc|ENSG00000037897|Q9UBP6-2|METTL1;ENSG00000037897|ENST00000324871|METTL1	ENST00000549773.1_1_12:58164850-58165866:-|nuORF	ENST00000549773.1_1_12:58164850-58165866:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	440.9627685546875	3	440.562938	1318.66699	-0.61695	-0.0002718	0.22668	9.9866E-05	-0.39027	-0.00017194	440.5630154117814	19.378	1.3161	19.981	19.583	20.899	0.60308					27	25	2	0	0	0	0.72513	1	5970	5970		13.535	5.2485	1	1855500			614	1150	435	439	592	592					0.020398734548052744
AEAPRLAEY	9	Unmodified	_AEAPRLAEY_					0	0	0		ENSG00000075856|ENST00000546815|SART3;nc|ENSG00000075856|Q15020-4|SART3;nc|ENSG00000075856|Q15020-2|SART3	ENSG00000075856|ENST00000546815|SART3	ENSG00000075856|ENST00000546815|SART3	MULTI-MSMS	A375_MHC_IP_R1	1	510.1814880371094	2	510.261456	1018.50836	-0.35292	-0.00018008	-0.42414	-0.00021642	-0.77706	-0.00039651	510.26131493792633	40.44	0.45801	40.44	40.151	40.609	0					19	8	3	0	0	0	0.1915	1	13941	13941		38.615	0.43918	1	8175200			615	1624	436	440	593	593					-0.00015420453473780071
AEAPRLAEY	9	Unmodified	_AEAPRLAEY_					0	0	0		ENSG00000075856|ENST00000546815|SART3;nc|ENSG00000075856|Q15020-4|SART3;nc|ENSG00000075856|Q15020-2|SART3	ENSG00000075856|ENST00000546815|SART3	ENSG00000075856|ENST00000546815|SART3	MULTI-MSMS	A375_MHC_IP_R2	2	510.1815490722656	2	510.261456	1018.50836	-0.78546	-0.00040079	0.11473	5.8543E-05	-0.67073	-0.00034225	510.26153414669653	39.673	0.50743	40.447	40.169	40.676	0.77451					20	9	3	0	0	0	0.085252	1	14706	14706		53.317	7.6171	1	9265000			616	1624	436	440	594	594					-0.00015420453473780071
AEAPSIQFESM	11	Unmodified	_AEAPSIQFESM_					0	0	0			REV__ENST00000462269.1_1_17:40467765-40469390:-|nuORF	REV__ENST00000462269.1_1_17:40467765-40469390:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	404.2534484863281	3	403.85339	1208.53834	-0.33001	-0.00013327	0.089032	3.5956E-05	-0.24098	-9.7319E-05	403.85334568406364	22.278	0.81686	22.897	22.693	23.51	0.61932					33	15	3	0	0	0	0.99332	1	7079	7079		10.315	6.9956	1	2803900	+		617	24986	437	441	595	595					-0.05758849570452185
AEAPSQVRL	9	Unmodified	_AEAPSQVRL_					0	0	0		nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2;CHPF2|p.R567Q|1|0.48|ENSG00000033100|chr7:151238062-151238062|G/A|missense_variant	nc|ENSG00000033100|Q9P2E5-2|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	MULTI-MSMS	A375_MHC_IP_R1	1	486.16925048828125	2	485.769448	969.524344	-0.55598	-0.00027008	-0.056305	-2.7351E-05	-0.61229	-0.00029743	485.76941390967744	36.67	0.60642	36.67	36.389	36.996	0					26	11	3	0	0	0	0.018261	1	12260	12260		85.642	13.719	1	12621000			618	1121	438	442	596	596					0.03836285783427229
AEAPSQVRL	9	Unmodified	_AEAPSQVRL_					0	0	0		nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2;CHPF2|p.R567Q|1|0.48|ENSG00000033100|chr7:151238062-151238062|G/A|missense_variant	nc|ENSG00000033100|Q9P2E5-2|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	MULTI-SECPEP	A375_MHC_IP_R2	2	486.1691589355469	2	485.769448	969.524344	-0.76847	-0.0003733	0.18769	9.1172E-05	-0.58079	-0.00028213	485.7695431445122	35.849	0.61082	36.612	36.283	36.894	0.76338					31	11	4	0	0	0	0.03109	1	12993	12993		103.35	14.4	1	16912000			619	1121	438	442	597	597					0.03836285783427229
AEAQFTTAL	9	Unmodified	_AEAQFTTAL_					0	0	0		ENSG00000129933|ENST00000262815|MAU2;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENST00000262816.11_1_19:19456115-19463084:+|nuORF	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-MSMS	A375_MHC_IP_R2	2	476.642333984375	2	476.242732	950.470912	-0.58174	-0.00027705	-0.139	-6.6197E-05	-0.72074	-0.00034325	476.2426325314042	72.939	0.86588	73.674	73.124	73.99	0.73541					26	16	2	0	0	0	0.60101	1	27735	27735		14.838	2.3067	1	1553100			620	4214	439	443	598	598					-0.00630511719111837
AEAQHAHNE	9	Unmodified	_AEAQHAHNE_					0	0	0			REV__ENST00000470356.3_1_19:3572943-3574226:+|nuORF	REV__ENST00000470356.3_1_19:3572943-3574226:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	504.1205749511719	2	503.720487	1005.42642	-0.55349	-0.00027881	0.54108	0.00027255	-0.012415	-6.2539E-06	503.7206653948434	53.027	0.65812	53.027	52.643	53.301	0					24	12	3	0	0	0	0.56537	1	18862	18862		29.082	29.082	1	4281000	+		621	25104	440	444	599	599					-0.07607522812566003
AEAQHAHNE	9	Unmodified	_AEAQHAHNE_					0	0	0			REV__ENST00000470356.3_1_19:3572943-3574226:+|nuORF	REV__ENST00000470356.3_1_19:3572943-3574226:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	504.12005615234375	2	503.720487	1005.42642	-1.0647	-0.00053632	0.74829	0.00037693	-0.31644	-0.0001594	503.72075316068225	52.325	0.6066	53.077	52.78	53.386	0.75225					18	11	2	0	0	0	0.73008	1	19705	19705		17.113	17.113	1	4296300	+		622	25104	440	444	600	600					-0.07607522812566003
AEAQIAAKNV	10	Unmodified	_AEAQIAAKNV_					0	0	0		ENST00000450663.1_1_1:173111074-173111284:-|nuORF	ENST00000450663.1_1_1:173111074-173111284:-|nuORF	ENST00000450663.1_1_1:173111074-173111284:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	508.19976806640625	2	507.782556	1013.55056	-0.64694	-0.0003285	-1.7147	-0.00087067	-2.3616	-0.0011992	507.781955980367	44.161	0.35521	44.93	44.782	45.138	0.7691					9	6	2	0	0	0	0.79457	1	16460	16460		20.415	0	1	633210			623	12069	441	445	601	601					0.044325549548943854
AEAQNKPKAI	10	Unmodified	_AEAQNKPKAI_					0	0	0			REV__ENSG00000130202|ENST00000252483|NECTIN2;REV__nc|ENSG00000130202|Q92692-2|NECTIN2	REV__nc|ENSG00000130202|Q92692-2|NECTIN2	MULTI-MSMS	A375_MHC_IP_R2	2	357.6047668457031	3	357.204862	1068.59276	-0.55156	-0.00019702	0.075018	2.6797E-05	-0.47655	-0.00017022	357.2049738968554	28.361	0.81216	29.04	28.401	29.214	0.67857					38	15	4	0	0	0	0.45806	1	9735	9735		30.703	10.123	1	9374400	+		624	27219;18524	442	446	602	602					0.061205303632732466
AEAQQLITI	9	Unmodified	_AEAQQLITI_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	A375_MHC_IP_R1	1	986.9508056640625	1	986.551687	985.544411	0.029749	2.9349E-05	-0.063486	-6.2632E-05	-0.033736	-3.3283E-05	986.5515325864689	91.221	0.55714	91.221	90.946	91.503	0					21	10	3	0	0	0	0.17338	1	33614	33614		39.95	3.8227	1	8527400			625	3768	443	447	603	603					0.05106036723384477
AEAQQLITI	9	Unmodified	_AEAQQLITI_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	A375_MHC_IP_R1	1	494.1790771484375	2	493.779482	985.544411	-0.50393	-0.00024883	0.00050799	2.5084E-07	-0.50342	-0.00024858	493.7794610566185	91.219	0.75865	91.219	90.896	91.655	0					43	14	4	0	0	0	0.046478	1	33466	33466		92.653	13.925	1	21946000			626	3768	443	447	604	604					0.05106036723384477
AEAQQLITI	9	Unmodified	_AEAQQLITI_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1790771484375	2	493.779482	985.544411	-0.39077	-0.00019295	-0.10439	-5.1546E-05	-0.49516	-0.0002445	493.77934667312684	90.402	0.91302	91.137	90.753	91.666	0.73451					49	17	4	0	0	0	0.11711	1	34336	34336		69.105	16.837	1	19270000			627	3768	443	447	605	605					0.05106036723384477
AEARESTCSY	10	Unmodified	_AEARESTCSY_					0	0	0		ENST00000336787.5_1_15:55520896-55527041:-|nuORF	ENST00000336787.5_1_15:55520896-55527041:-|nuORF	ENST00000336787.5_1_15:55520896-55527041:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	559.6854248046875	2	558.734945	1115.45534	-0.7152	-0.00039961	-1.697	-0.00094818	-2.4122	-0.0013478	558.7333330327698	31.871	0.55893	32.608	32.401	32.96	0.73692					23	10	3	0	0	0	0.70012	1	11329	11329		12.241	2.1667	1	4004500			628	10820	444	448	606	606					-0.09777166298431439
AEARLVVKL	9	Unmodified	_AEARLVVKL_					0	0	0		nc|ENSG00000177963|Q9NPQ8-4|RIC8A;ENSG00000177963|ENST00000526104|RIC8A;nc|ENSG00000177963|Q9NPQ8-3|RIC8A;ENST00000526982.1_1_11:209264-210619:+|nuORF;nc|ENSG00000177963|Q9NPQ8-2|RIC8A	nc|ENSG00000177963|Q9NPQ8-4|RIC8A	nc|ENSG00000177963|Q9NPQ8-4|RIC8A	MULTI-SECPEP	A375_MHC_IP_R1	1	500.221435546875	2	499.821484	997.628415	-0.23366	-0.00011679	-0.16524	-8.2591E-05	-0.39891	-0.00019938	499.82133320664855	47.74	0.55447	47.74	47.517	48.071	0					21	10	3	0	0	0	0.33896	1	16824	16824		47.594	1.8948	1	4740600			629	8118	445	449	607	607					0.1295061261095043
AEASALYGRAL	11	Unmodified	_AEASALYGRAL_					0	0	0		ENSG00000025772|ENST00000372813|TOMM34	ENSG00000025772|ENST00000372813|TOMM34	ENSG00000025772|ENST00000372813|TOMM34	MULTI-SECPEP	A375_MHC_IP_R1	1	561.7005615234375	2	561.301113	1120.58767	-0.63761	-0.00035789	-0.96802	-0.00054335	-1.6056	-0.00090124	561.8016754702869	52.846	0.60759	52.846	52.541	53.148	0					25	11	3	0	0	0	0.85604	1	18819	18819		45.74	24.203	1	2414100			630	1090	446	450	608	608					0.032202265006844755
AEASALYGRAL	11	Unmodified	_AEASALYGRAL_					0	0	0		ENSG00000025772|ENST00000372813|TOMM34	ENSG00000025772|ENST00000372813|TOMM34	ENSG00000025772|ENST00000372813|TOMM34	MULTI-SECPEP	A375_MHC_IP_R2	2	561.7005615234375	2	561.301113	1120.58767	-0.94066	-0.00052799	-0.78162	-0.00043872	-1.7223	-0.00096671	561.3010818114881	52.037	0.45878	52.789	52.524	52.983	0.75225					20	8	3	0	0	0	0.82239	1	19619	19619		49.527	23.259	1	3021300			631	1090	446	450	609	609					0.032202265006844755
AEASLKIAM	9	Oxidation (M)	_AEASLKIAM(Oxidation (M))_		AEASLKIAM(1)		AEASLKIAM(77)	0	0	1		tr|U7SSU0|U7SSU0_FUSNUPyruvate,phosphatedikinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01376PE=3SV=1	tr|U7SSU0|U7SSU0_FUSNUPyruvate,phosphatedikinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01376PE=3SV=1	tr|U7SSU0|U7SSU0_FUSNUPyruvate,phosphatedikinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01376PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	475.6544189453125	2	475.254785	948.495018	-0.6462	-0.00030711	0.48058	0.0002284	-0.16562	-7.8712E-05	475.2549547633574	50.733	0.45472	51.488	51.26	51.715	0.75406					15	8	2	0	0	0	0.027818	1	19103	19103		76.825	7.4866	1	13207000			632	29650	447	451	610	610		493			0.01871005442922069
AEASMISKL	9	Unmodified	_AEASMISKL_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-SECPEP	A375_MHC_IP_R1	1	475.65484619140625	2	475.254785	948.495018	-0.35157	-0.00016709	0.42653	0.00020271	0.07495	3.5621E-05	475.25495076398136	51.65	0.40573	51.65	51.373	51.778	0					13	7	2	0	0	0	0.090157	1	18322	18322		67.838	0	1	11587000			633	1268	448	452	611	611					0.018710054429334377
AEASMISKL	9	Oxidation (M)	_AEASM(Oxidation (M))ISKL_		AEASM(1)ISKL		AEASM(97)ISKL	0	0	1		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-SECPEP	A375_MHC_IP_R1	1	483.65179443359375	2	483.252243	964.489932	-0.2944	-0.00014227	0.13186	6.3722E-05	-0.16254	-7.8547E-05	483.2523629563907	31.746	1.1213	31.746	31.312	32.434	0					53	21	4	0	0	0	0.030244	1	10088	10088		96.936	62.534	1	13775000			634	1268	448	453	612	612		26			0.006267015803246068
AEASMISKL	9	Oxidation (M)	_AEASM(Oxidation (M))ISKL_		AEASM(1)ISKL		AEASM(78)ISKL	0	0	1		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-MSMS	A375_MHC_IP_R2	2	483.6511535644531	2	483.252243	964.489932	-0.68472	-0.00033089	-0.21667	-0.0001047	-0.90138	-0.00043559	483.2520182979907	50.796	0.65602	51.55	51.159	51.815	0.75406					23	12	3	0	0	0	0.026372	1	19108	19108		78.06	38.103	1	2740400			635	1268	448	453	613	613		26			0.006267015803246068
AEASMISKL	9	Oxidation (M)	_AEASM(Oxidation (M))ISKL_		AEASM(1)ISKL		AEASM(51)ISKL	0	0	1		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-SECPEP	A375_MHC_IP_R2	2	483.65185546875	2	483.252243	964.489932	-0.61577	-0.00029757	-0.0558	-2.6966E-05	-0.67157	-0.00032454	483.2521446520278	30.996	0.96374	31.714	31.216	32.18	0.71857					44	18	3	0	0	0	0.20059	1	10848	10848		51.415	51.415	1	10241000			636	1268	448	453	614	614		26			0.006267015803246068
AEASVDPSLSW	11	Unmodified	_AEASVDPSLSW_					0	0	0		ENSG00000132467|ENST00000254803|UTP3	ENSG00000132467|ENST00000254803|UTP3	ENSG00000132467|ENST00000254803|UTP3	MULTI-SECPEP	A375_MHC_IP_R2	2	581.6754760742188	2	581.274761	1160.53497	-0.10715	-6.2283E-05	-0.26714	-0.00015528	-0.37428	-0.00021756	581.7756638936263	94.53	0.45712	95.275	94.969	95.426	0.74474					14	8	2	0	0	0	0.86796	1	35942	35942		26.268	11.43	1	1721300			637	4412	449	454	615	615					-0.03887776352803485
AEASVDPSLSW	11	Unmodified	_AEASVDPSLSW_					0	0	0		ENSG00000132467|ENST00000254803|UTP3	ENSG00000132467|ENST00000254803|UTP3	ENSG00000132467|ENST00000254803|UTP3	MULTI-MATCH	A375_MHC_IP_R1	1		2	581.274761	1160.53497	-0.34069	-0.00019803	-1.109	-0.00064461	-1.4496	-0.00084264	581.7750968078872	95.143	0.61291	95.143	94.802	95.415	0	-0.065728	-0.00066379	NaN	26.268	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2847600			638	4412	449	454							-0.03887776352803485
AEASVMTQL	9	Unmodified	_AEASVMTQL_					0	0	0		ENST00000564216.5_1_15:75092818-75094348:+|nuORF;ENSG00000103653|ENST00000220003|CSK	ENST00000564216.5_1_15:75092818-75094348:+|nuORF	ENST00000564216.5_1_15:75092818-75094348:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	475.6708679199219	2	475.236593	948.458632	-0.33541	-0.0001594	-0.089286	-4.2432E-05	-0.4247	-0.00020183	475.23664672757934	70.28	0.5627	70.28	70.034	70.597	0					16	10	2	0	0	0	0.2264	2	25481	25481;25562		36.044	6.43	1	1985300			639	2463	450	455	616;617	616					-0.017658714537674314
AEASVMTQL	9	Unmodified	_AEASVMTQL_					0	0	0		ENST00000564216.5_1_15:75092818-75094348:+|nuORF;ENSG00000103653|ENST00000220003|CSK	ENST00000564216.5_1_15:75092818-75094348:+|nuORF	ENST00000564216.5_1_15:75092818-75094348:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	475.6714782714844	2	475.236593	948.458632	-0.44917	-0.00021346	-0.26665	-0.00012672	-0.71582	-0.00034018	475.2364523400817	69.423	0.76274	70.157	69.879	70.642	0.73421					23	14	2	0	0	0	0.2002	2	26286	26286;26306		37.974	1.9855	1	2439500			640	2463	450	455	618;619	618					-0.017658714537674314
AEAVQKFFL	9	Unmodified	_AEAVQKFFL_					0	0	0		ENSG00000173726|ENST00000366607|TOMM20	ENSG00000173726|ENST00000366607|TOMM20	ENSG00000173726|ENST00000366607|TOMM20	MULTI-SECPEP	A375_MHC_IP_R1	1	527.19140625	2	526.792392	1051.57023	-0.69148	-0.00036427	-1.0643	-0.00056067	-1.7558	-0.00092493	526.7915931691747	84.394	0.55663	84.394	84.141	84.697	0					27	10	3	0	0	0	0.13208	1	30902	30902		66.457	22.598	1	5745000			641	7825	451	456	620	620					0.046509309656585174
AEAVQKFFL	9	Unmodified	_AEAVQKFFL_					0	0	0		ENSG00000173726|ENST00000366607|TOMM20	ENSG00000173726|ENST00000366607|TOMM20	ENSG00000173726|ENST00000366607|TOMM20	MULTI-SECPEP	A375_MHC_IP_R2	2	526.2603149414062	2	526.792392	1051.57023	-0.41931	-0.00022089	-1.0073	-0.00053062	-1.4266	-0.00075152	526.7916926706592	83.426	0.91766	84.166	83.745	84.663	0.73962					25	17	2	0	0	0	0.056023	1	31710	31710		85.642	45.684	1	3031300			642	7825	451	456	621	621					0.046509309656585174
AEAVSTRW	8	Unmodified	_AEAVSTRW_					0	0	0		ENSG00000178913|ENST00000313368|TAF7;nc|ENSG00000102387|Q5H9L4-3|TAF7L;ENSG00000102387|ENST00000356784|TAF7L;nc|ENSG00000102387|Q5H9L4|TAF7L	ENSG00000178913|ENST00000313368|TAF7;nc|ENSG00000102387|Q5H9L4-3|TAF7L	ENSG00000178913|ENST00000313368|TAF7	MULTI-MSMS	A375_MHC_IP_R1	1	460.6352233886719	2	460.235242	918.45593	-0.12764	-5.8745E-05	0.43844	0.00020179	0.3108	0.00014304	460.2352462711829	35.09	0.96836	35.09	34.81	35.778	0					28	18	2	0	0	0	0.48656	1	11646	11646		49.554	5.696	1	4220400			643	8186;2377	452	457	622	622					-0.006559587964261482
AEAVSTRW	8	Unmodified	_AEAVSTRW_					0	0	0		ENSG00000178913|ENST00000313368|TAF7;nc|ENSG00000102387|Q5H9L4-3|TAF7L;ENSG00000102387|ENST00000356784|TAF7L;nc|ENSG00000102387|Q5H9L4|TAF7L	ENSG00000178913|ENST00000313368|TAF7;nc|ENSG00000102387|Q5H9L4-3|TAF7L	ENSG00000178913|ENST00000313368|TAF7	MULTI-MSMS	A375_MHC_IP_R2	2	460.6349792480469	2	460.235242	918.45593	-0.67965	-0.0003128	0.56811	0.00026146	-0.11154	-5.1334E-05	460.2352634600892	34.435	0.91351	35.188	34.853	35.767	0.75225					28	17	3	0	0	0	0.534	1	12394	12394		47.594	16.958	1	3974100			644	8186;2377	452	457	623	623					-0.006559587964261482
AEAWHEAFL	9	Unmodified	_AEAWHEAFL_					0	0	0			REV__ENST00000419381.1_2_2:70409101-70410042:-|nuORF	REV__ENST00000419381.1_2_2:70409101-70410042:-|nuORF	MSMS	A375_MHC_IP_R1	1	537.1708374023438	2	537.256174	1072.49779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.91	1	126.91	126.41	127.41	0								0	0	0	0.14905	1	48546	48546		23.148	2.2772	1		+		645	23236	453	458	624	624					-0.035554031079072956
AEAYGKKEW	9	Unmodified	_AEAYGKKEW_					0	0	0		ENSG00000178425|ENST00000319550|NT5DC1;nc|ENSG00000178425|Q5TFE4-2|NT5DC1;ENST00000417846.2_1_6:116432031-116439170:+|nuORF	ENSG00000178425|ENST00000319550|NT5DC1	ENSG00000178425|ENST00000319550|NT5DC1	MULTI-SECPEP	A375_MHC_IP_R1	1	360.5928039550781	3	361.181946	1080.52401	0.38941	0.00014065	0.68087	0.00024592	1.0703	0.00038657	361.1817486377444	21.348	0.2042	21.348	21.25	21.454	0					5	3	2	0	0	0	0.75842	1	5628	5628		12.873	8.9282	1	559470			646	8160	454	459	625	625					-0.01303133936426093
AEAYLGKTV	9	Unmodified	_AEAYLGKTV_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000456928.2_1_12:4206979-4207195:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8;ENST00000456928.2_1_12:4206979-4207195:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	MULTI-SECPEP	A375_MHC_IP_R1	1	476.6606140136719	2	476.260925	950.507297	-0.39884	-0.00018995	0.1077	5.1295E-05	-0.29114	-0.00013866	476.2608388348029	35.933	0.96681	35.933	35.472	36.439	0					49	18	4	0	0	0	0.044425	1	11939	11939		87.258	15.55	1	37659000			647	2906;12137	455	460	626	626					0.03006365177623138
AECEFCCF	8	Unmodified	_AECEFCCF_					0	0	0			REV__PRICKLE3|p.H275Y|1|0.26|ENSG00000012211|chrX:49178125-49178125|G/A|missense_variant	REV__PRICKLE3|p.H275Y|1|0.26|ENSG00000012211|chrX:49178125-49178125|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	476.1336975097656	2	476.155899	950.297246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.909	1	52.661	52.161	53.161	0.75225								0	0	0	0.16876	1	19548	19548		5.7604	3.1829	1		+		648	16222	456	461	627	627					-0.17989080082895725
AECEFPPHLD	10	Unmodified	_AECEFPPHLD_					0	0	0		ENST00000578537.1_1_17:8133236-8135054:-|nuORF;ENST00000578240.1_1_17:8133610-8135926:-|nuORF;nc|ENSG00000178971|Q2NKJ3-2|CTC1;ENSG00000178971|ENST00000651323|CTC1	ENST00000578537.1_1_17:8133236-8135054:-|nuORF	ENST00000578537.1_1_17:8133236-8135054:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	580.6561279296875	2	579.250231	1156.48591	-0.37978	-0.00021999	-0.79518	-0.00046061	-1.175	-0.0006806	579.2473013346962	52.895	0.55634	52.895	52.643	53.199	0					34	10	4	0	0	0	0.70496	1	18821	18821		10.074	3.8681	1	2569200			649	8192	457	462	628	628					-0.08607387913411912
AEDAMRLYY	9	Unmodified	_AEDAMRLYY_					0	0	0		ENST00000592962.5_1_19:36604659-36605276:-|nuORF;ENST00000589591.5_1_19:36604659-36605638:-|nuORF;ENSG00000105258|ENST00000221859|POLR2I;ENST00000586439.1_1_19:36604659-36605969:-|nuORF	ENST00000592962.5_1_19:36604659-36605276:-|nuORF	ENST00000592962.5_1_19:36604659-36605276:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	566.7109375	2	566.260599	1130.50665	-0.43301	-0.0002452	-0.020374	-1.1537E-05	-0.45339	-0.00025674	566.2605576075906	64.59	0.559	64.59	64.292	64.851	0					13	10	2	0	0	0	0.035419	2	23391	23355;23391		70.332	42.703	1	2452300			650	2582	458	463	629;630	630					-0.05338797533750039
AEDAMRLYY	9	Unmodified	_AEDAMRLYY_					0	0	0		ENST00000592962.5_1_19:36604659-36605276:-|nuORF;ENST00000589591.5_1_19:36604659-36605638:-|nuORF;ENSG00000105258|ENST00000221859|POLR2I;ENST00000586439.1_1_19:36604659-36605969:-|nuORF	ENST00000592962.5_1_19:36604659-36605276:-|nuORF	ENST00000592962.5_1_19:36604659-36605276:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	566.7112426757812	2	566.260599	1130.50665	-0.34729	-0.00019666	-0.30815	-0.00017449	-0.65544	-0.00037115	566.2604253588612	63.899	0.50742	64.64	64.394	64.902	0.74022					15	9	2	0	0	0	0.084766	1	24199	24199		53.404	28.005	1	2420200			651	2582	458	463	631	631					-0.05338797533750039
AEDAPWKKI	9	Unmodified	_AEDAPWKKI_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNB|p.H532Tfs*9|1|0.29|ENSG00000136068|chr3:58104060-58104061|-/G|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB	nc|ENSG00000196924|P21333-2|FLNA;nc|ENSG00000128591|Q14315-2|FLNC;nc|ENSG00000136068|O75369-6|FLNB	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	A375_MHC_IP_R1	1	353.5940856933594	3	353.194075	1056.5604	-0.035013	-1.2366E-05	-0.0046394	-1.6386E-06	-0.039652	-1.4005E-05	353.19401839904924	39.371	0.96523	39.371	39.033	39.999	0					50	18	4	0	0	0	0.22528	1	13386	13386		33.445	8.4539	1	61520000			652	9093;4149;4749	459	464	632	632					0.034377429602727716
AEDAPWKKI	9	Unmodified	_AEDAPWKKI_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNB|p.H532Tfs*9|1|0.29|ENSG00000136068|chr3:58104060-58104061|-/G|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB	nc|ENSG00000196924|P21333-2|FLNA;nc|ENSG00000128591|Q14315-2|FLNC;nc|ENSG00000136068|O75369-6|FLNB	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	A375_MHC_IP_R1	1	529.6873168945312	2	529.287474	1056.5604	-0.50726	-0.00026849	-0.020157	-1.0669E-05	-0.52742	-0.00027916	529.2874430022729	39.383	0.55843	39.383	39.085	39.643	0					19	10	2	0	0	0	0.0061124	2	13416	13416;13529		133.05	74.373	1	13389000			653	9093;4149;4749	459	464	633;634	633					0.034377429602727716
AEDAPWKKI	9	Unmodified	_AEDAPWKKI_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNB|p.H532Tfs*9|1|0.29|ENSG00000136068|chr3:58104060-58104061|-/G|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB	nc|ENSG00000196924|P21333-2|FLNA;nc|ENSG00000128591|Q14315-2|FLNC;nc|ENSG00000136068|O75369-6|FLNB	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	A375_MHC_IP_R2	2	353.5939025878906	3	353.194075	1056.5604	-0.59858	-0.00021142	0.010763	3.8013E-06	-0.58782	-0.00020761	353.194025952805	38.5	1.0191	39.274	38.895	39.914	0.77451					50	19	4	0	0	0	0.10411	1	14122	14122		45.74	24.15	1	56471000			654	9093;4149;4749	459	464	635	635					0.034377429602727716
AEDAPWKKI	9	Unmodified	_AEDAPWKKI_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNB|p.H532Tfs*9|1|0.29|ENSG00000136068|chr3:58104060-58104061|-/G|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB	nc|ENSG00000196924|P21333-2|FLNA;nc|ENSG00000128591|Q14315-2|FLNC;nc|ENSG00000136068|O75369-6|FLNB	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	A375_MHC_IP_R2	2	529.687255859375	2	529.287474	1056.5604	-0.93885	-0.00049692	-0.076093	-4.0275E-05	-1.0149	-0.0005372	529.287386421701	38.501	0.55964	39.276	38.997	39.556	0.77451					20	10	2	0	0	0	0.0096822	1	14156	14156		110.55	72.579	1	11965000			655	9093;4149;4749	459	464	636	636					0.034377429602727716
AEDAQYLPP	9	Unmodified	_AEDAQYLPP_					0	0	0			REV__nc|ENSG00000129646|Q9H0J4-3|QRICH2	REV__nc|ENSG00000129646|Q9H0J4-3|QRICH2	MULTI-MSMS	A375_MHC_IP_R2	2	503.681640625	2	502.24019	1002.46583	-0.97705	-0.00049072	0.018672	9.378E-06	-0.95838	-0.00048134	502.2401573825859	38.299	0.86665	39.073	38.791	39.658	0.77451					44	16	4	0	0	0	0.55818	1	14014	14014		16.942	1.0951	1	49153000	+		656	18501	460	465	637	637					-0.03530815581711977
AEDDFKKVL	9	Unmodified	_AEDDFKKVL_					0	0	0		ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MULTI-MSMS	A375_MHC_IP_R1	1	355.9254455566406	3	355.525602	1063.55498	-0.27583	-9.8063E-05	0.20745	7.3752E-05	-0.06838	-2.4311E-05	355.52567637156426	41.188	1.069	41.188	40.913	41.982	0					59	20	4	0	0	0	0.26911	3	14165	14165;14247;14405		32.898	9.0967	1	179840000			657	2384	461	466	638;639;640	638					0.025740193778119647
AEDDFKKVL	9	Unmodified	_AEDDFKKVL_					0	0	0		ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MULTI-MSMS	A375_MHC_IP_R1	1	532.67431640625	2	532.784764	1063.55498	-0.90548	-0.00048242	0.52299	0.00027864	-0.38249	-0.00020378	532.7849718481698	41.189	0.86382	41.189	40.913	41.777	0					46	16	4	0	0	0	0.0098956	1	14203	14203		140.63	80.559	1	62726000			658	2384	461	466	641	641					0.025740193778119647
AEDDFKKVL	9	Unmodified	_AEDDFKKVL_					0	0	0		ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MULTI-MSMS	A375_MHC_IP_R2	2	355.9252624511719	3	355.525602	1063.55498	-0.29681	-0.00010552	0.010345	3.6777E-06	-0.28647	-0.00010185	355.5255968306858	40.384	1.0156	41.158	40.879	41.895	0.77451					52	19	3	0	0	0	0.10637	2	14914	14914;15075		49.527	20.09	1	185750000			659	2384	461	466	642;643	642					0.025740193778119647
AEDDFKKVL	9	Unmodified	_AEDDFKKVL_					0	0	0		ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MULTI-SECPEP	A375_MHC_IP_R2	2	533.184326171875	2	532.784764	1063.55498	-0.79628	-0.00042424	0.12958	6.9039E-05	-0.6667	-0.00035521	532.7847762170815	40.388	0.81252	41.163	40.828	41.641	0.77451					47	15	4	0	0	0	0.011031	1	14933	14933		140.63	85.13	1	55253000			660	2384	461	466	644	644					0.025740193778119647
AEDEDLRVHF	10	Unmodified	_AEDEDLRVHF_					0	0	0		nc|ENSG00000196419|P12956-2|XRCC6;ENSG00000196419|ENST00000360079|XRCC6	nc|ENSG00000196419|P12956-2|XRCC6	nc|ENSG00000196419|P12956-2|XRCC6	MULTI-SECPEP	A375_MHC_IP_R2	2	411.60546875	3	410.863165	1229.56767	-0.11041	-4.5365E-05	0.31841	0.00013082	0.20799	8.5457E-05	410.86308595330905	50.634	0.30359	51.388	51.209	51.513	0.75406					8	5	2	0	0	0	0.85215	1	19068	19068		15.538	5.7742	1	845310			661	9038	462	467	645	645					-0.03793569229969762
AEDEEGYRKL	10	Unmodified	_AEDEEGYRKL_					0	0	0		SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant;nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4	SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant;nc|ENSG00000127616|P51532-5|SMARCA4	SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	403.9270324707031	3	403.863053	1208.56733	-0.064974	-2.624E-05	-1.3933	-0.00056269	-1.4582	-0.00058893	403.8623231655949	22.646	0.55662	22.646	22.317	22.873	0					12	10	2	0	0	0	0.91057	1	6170	6170		18.721	0.85806	1	1410900			662	1714;4100	463	468	646	646					-0.0286098894978295
AEDEGVSQRKF	11	Unmodified	_AEDEGVSQRKF_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	A375_MHC_IP_R1	1	633.7095947265625	2	633.309666	1264.60478	-0.53197	-0.0003369	-0.046369	-2.9366E-05	-0.57834	-0.00036627	633.309585944098	20.46	0.76553	20.46	20.18	20.946	0					37	14	4	0	0	0	0.00034894	1	5236	5236		146.48	109.98	1	12225000			663	9580	464	469	647	647					-0.016938976841856856
AEDEGVSQRKF	11	Unmodified	_AEDEGVSQRKF_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	A375_MHC_IP_R1	1	422.9421081542969	3	422.542203	1264.60478	0.098902	4.179E-05	-0.1416	-5.9833E-05	-0.042701	-1.8043E-05	422.5421407214774	20.444	1.0688	20.444	20.079	21.148	0					63	20	5	0	0	0	0.46809	1	5439	5439		33.632	21.405	1	46904000			664	9580	464	469	648	648					-0.016938976841856856
AEDEGVSQRKF	11	Unmodified	_AEDEGVSQRKF_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	A375_MHC_IP_R1	1	422.942138671875	3	422.542203	1264.60478	0.34678	0.00014653	-0.096069	-4.0593E-05	0.25071	0.00010594	422.542123326164	22.748	0.60492	22.748	22.469	23.074	0					15	11	2	0	0	0	0.011102	1	6145	6145		92.409	71.538	1	13351000			665	9580	464	469	649	649					-0.016938976841856856
AEDEGVSQRKF	11	Unmodified	_AEDEGVSQRKF_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-SECPEP	A375_MHC_IP_R1	1	633.70947265625	2	633.309666	1264.60478	-0.28687	-0.00018168	0.2604	0.00016491	-0.026473	-1.6766E-05	633.3096849717879	22.748	0.25025	22.748	22.623	22.873	0					7	4	2	0	0	0	0.87263	1	6161	6161		23.964	17.334	1	3200400			666	9580	464	469	650	650					-0.016938976841856856
AEDEGVSQRKF	11	Unmodified	_AEDEGVSQRKF_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	A375_MHC_IP_R2	2	633.7092895507812	2	633.309666	1264.60478	-1.0825	-0.00068559	0.29168	0.00018472	-0.79087	-0.00050086	633.3098127858655	19.326	0.55727	19.929	19.633	20.19	0.60308					30	10	4	0	0	0	1.3646E-05	1	5919	5919		183.95	136.36	1	11302000			667	9580	464	469	651	651					-0.016938976841856856
AEDEGVSQRKF	11	Unmodified	_AEDEGVSQRKF_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	A375_MHC_IP_R2	2	422.94189453125	3	422.542203	1264.60478	-0.47383	-0.00020022	0.31287	0.0001322	-0.16096	-6.8013E-05	422.5422336118366	22.303	0.56112	22.922	22.643	23.204	0.61932					20	10	3	0	0	0	0.067248	1	7084	7084		76.068	55.658	1	7241500			668	9580	464	469	652	652					-0.016938976841856856
AEDEGVSQRKF	11	Unmodified	_AEDEGVSQRKF_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-SECPEP	A375_MHC_IP_R2	2	422.954345703125	3	422.542203	1264.60478	-0.41447	-0.00017513	0.16181	6.837E-05	-0.25266	-0.00010676	422.5422850640849	19.352	0.808	19.955	19.533	20.341	0.60308					47	15	4	0	0	0	0.01699	1	5883	5883		76.068	59.794	1	53846000			669	9580	464	469	653	653					-0.016938976841856856
AEDEGVSQRKF	11	Unmodified	_AEDEGVSQRKF_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-SECPEP	A375_MHC_IP_R2	2	633.7089233398438	2	633.309666	1264.60478	-1.1428	-0.00072374	-0.085914	-5.441E-05	-1.2287	-0.00077815	633.3099516760814	22.325	0.25675	22.944	22.846	23.102	0.61932					6	4	2	0	0	0	0.95135	1	7107	7107		17.049	6.898	1	1332900			670	9580	464	469	654	654					-0.016938976841856856
AEDELFNRY	9	Unmodified	_AEDELFNRY_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107;NUP107|p.E424K|1|0.07|ENSG00000111581|chr12:68721136-68721136|G/A|missense_variant	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-SECPEP	A375_MHC_IP_R1	1	578.1494140625	2	578.767103	1155.51965	-0.1832	-0.00010603	0.28445	0.00016463	0.10125	5.8603E-05	578.7671123768101	57.578	0.86417	57.578	57.211	58.075	0					44	16	4	0	0	0	9.5323E-05	1	20651	20651		163.04	137.64	1	24369000			671	2998	465	470	655	655					-0.05188643149995187
AEDENGKIVGY	11	Unmodified	_AEDENGKIVGY_					0	0	0		ENST00000478177.1_1_X:153199394-153200402:-|nuORF;ENST00000466877.5_1_X:153197755-153200402:-|nuORF;ENST00000494813.5_1_X:153187159-153200402:-|nuORF;nc|ENSG00000102030|P41227-2|NAA10;ENSG00000102030|ENST00000464845|NAA10	ENST00000478177.1_1_X:153199394-153200402:-|nuORF	ENST00000478177.1_1_X:153199394-153200402:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	598.1854858398438	2	597.785492	1193.55643	-0.36563	-0.00021857	0.19168	0.00011458	-0.17394	-0.00010398	597.785562073422	33.893	0.6557	33.893	33.597	34.253	0					27	12	3	0	0	0	0.00022066	1	11083	11083		210.93	153.21	1	35741000			672	2351	466	471	656	656					-0.032603913240564
AEDENGKIVGY	11	Unmodified	_AEDENGKIVGY_					0	0	0		ENST00000478177.1_1_X:153199394-153200402:-|nuORF;ENST00000466877.5_1_X:153197755-153200402:-|nuORF;ENST00000494813.5_1_X:153187159-153200402:-|nuORF;nc|ENSG00000102030|P41227-2|NAA10;ENSG00000102030|ENST00000464845|NAA10	ENST00000478177.1_1_X:153199394-153200402:-|nuORF	ENST00000478177.1_1_X:153199394-153200402:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	598.1851196289062	2	597.785492	1193.55643	-0.81213	-0.00048548	0.15236	9.1081E-05	-0.65976	-0.0003944	597.7855284465335	33.281	0.61064	34.033	33.737	34.348	0.75225					28	11	3	0	0	0	7.3863E-07	1	11865	11865		238.63	168.3	1	39996000			673	2351	466	471	657	657					-0.032603913240564
AEDFLKDYI	9	Unmodified	_AEDFLKDYI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.Y425Lfs*24|1|0.13|ENSG00000108654|chr17:64500716-64500717|-/A|frameshift_variant;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000581551.1_1_17:62499042-62499524:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	A375_MHC_IP_R1	1	557.7181396484375	2	557.276772	1112.53899	-0.55762	-0.00031075	0.74233	0.00041368	0.18471	0.00010293	557.2769378925801	95.977	0.40427	95.977	95.716	96.12	0					15	7	3	0	0	0	0.22013	1	35228	35228		36.506	16.053	1	1086600			674	2826	467	472	658	658					-0.012776868590890444
AEDFYSRLL	9	Unmodified	_AEDFYSRLL_					0	0	0		ENST00000567926.5_1_15:66797640-66797730:+|nuORF;ENST00000535141.6_1_15:66797640-66806344:+|nuORF;ENSG00000174442|ENST00000307897|ZWILCH	ENST00000567926.5_1_15:66797640-66797730:+|nuORF	ENST00000567926.5_1_15:66797640-66797730:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	558.0713500976562	2	557.282389	1112.55022	-0.68753	-0.00038315	-0.94833	-0.00052849	-1.6359	-0.00091164	557.2815863592597	89.118	0.39962	89.85	89.685	90.085	0.7318					9	7	2	0	0	0	0.57304	1	33891	33891		29.841	10.584	1	919070			675	7878	468	473	659	659					-0.001548647649542545
AEDGLIRQY	9	Unmodified	_AEDGLIRQY_					0	0	0		nc|ENSG00000142784|Q8N5D0-4|WDTC1;ENSG00000142784|ENST00000319394|WDTC1;ENST00000491239.2_1_1:27614218-27630434:+|nuORF;nc|ENSG00000142784|Q8N5D0-5|WDTC1;nc|ENSG00000142784|Q8N5D0-3|WDTC1;nc|ENSG00000142784|Q8N5D0-6|WDTC1;nc|ENSG00000142784|Q8N5D0-2|WDTC1	nc|ENSG00000142784|Q8N5D0-4|WDTC1	nc|ENSG00000142784|Q8N5D0-4|WDTC1	MULTI-MSMS	A375_MHC_IP_R1	1	533.6549682617188	2	532.772188	1063.52982	-0.092256	-4.9151E-05	-0.038764	-2.0652E-05	-0.13102	-6.9804E-05	532.77198504066	44.796	0.96685	44.796	44.216	45.183	0					44	18	4	0	0	0	0.19747	1	15686	15686		38.176	23.337	1	8858600			676	5331	469	474	660	660					0.0005996457523451681
AEDGLIRQY	9	Unmodified	_AEDGLIRQY_					0	0	0		nc|ENSG00000142784|Q8N5D0-4|WDTC1;ENSG00000142784|ENST00000319394|WDTC1;ENST00000491239.2_1_1:27614218-27630434:+|nuORF;nc|ENSG00000142784|Q8N5D0-5|WDTC1;nc|ENSG00000142784|Q8N5D0-3|WDTC1;nc|ENSG00000142784|Q8N5D0-6|WDTC1;nc|ENSG00000142784|Q8N5D0-2|WDTC1	nc|ENSG00000142784|Q8N5D0-4|WDTC1	nc|ENSG00000142784|Q8N5D0-4|WDTC1	MULTI-SECPEP	A375_MHC_IP_R2	2	533.17138671875	2	532.772188	1063.52982	-0.55679	-0.00029664	-0.27689	-0.00014752	-0.83368	-0.00044416	532.77198624637	44.08	0.75882	44.849	44.48	45.239	0.7691					44	14	4	0	0	0	0.013591	1	16401	16401		118.07	76.229	1	10480000			677	5331	469	474	661	661					0.0005996457523451681
AEDGLLFKF	9	Unmodified	_AEDGLLFKF_					0	0	0		ENSG00000139514|ENST00000380752|SLC7A1	ENSG00000139514|ENST00000380752|SLC7A1	ENSG00000139514|ENST00000380752|SLC7A1	MULTI-MSMS	A375_MHC_IP_R1	1	520.6762084960938	2	520.276575	1038.5386	-0.30642	-0.00015942	-0.24811	-0.00012909	-0.55454	-0.00028851	520.2764260827905	106.8	0.56253	106.8	106.57	107.14	0					26	10	3	0	0	0	0.032333	1	39189	39189		72.968	47.569	1	3578600			678	5082	470	475	662	662					0.020869382117098212
AEDGLLFKF	9	Unmodified	_AEDGLLFKF_					0	0	0		ENSG00000139514|ENST00000380752|SLC7A1	ENSG00000139514|ENST00000380752|SLC7A1	ENSG00000139514|ENST00000380752|SLC7A1	MULTI-MSMS	A375_MHC_IP_R2	2	520.6757202148438	2	520.276575	1038.5386	-0.65928	-0.00034301	-0.17316	-9.0092E-05	-0.83244	-0.0004331	520.2764224972404	105.94	0.61309	106.7	106.37	106.99	0.75977					22	11	3	0	0	0	0.029064	1	40047	40047		75.761	51.74	1	3607200			679	5082	470	475	663	663					0.020869382117098212
AEDGPQVLV	9	Unmodified	_AEDGPQVLV_					0	0	0		nc|ENSG00000091622|Q9BZ71-2|PITPNM3;nc|ENSG00000091622|Q9BZ71-3|PITPNM3;ENSG00000091622|ENST00000262483|PITPNM3	nc|ENSG00000091622|Q9BZ71-2|PITPNM3	nc|ENSG00000091622|Q9BZ71-2|PITPNM3	MSMS	A375_MHC_IP_R1	1	464.1996154785156	2	464.242732	926.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.53	1	135.53	135.03	136.03	0								0	0	0	0.15486	1	52239	52239		12.532	1.4171	1				680	1983	471	476	664	664					0.0047348828089752715
AEDGPQVLV	9	Unmodified	_AEDGPQVLV_					0	0	0		nc|ENSG00000091622|Q9BZ71-2|PITPNM3;nc|ENSG00000091622|Q9BZ71-3|PITPNM3;ENSG00000091622|ENST00000262483|PITPNM3	nc|ENSG00000091622|Q9BZ71-2|PITPNM3	nc|ENSG00000091622|Q9BZ71-2|PITPNM3	MSMS	A375_MHC_IP_R2	2	464.1992492675781	2	464.242732	926.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.36	1	135.5	135	136	0.13901								0	0	0	0.15486	1	53216	53216		12.532	1.4171	1				681	1983	471	476	665	665					0.0047348828089752715
AEDGPRVVF	9	Unmodified	_AEDGPRVVF_					0	0	0		ENSG00000128203|ENST00000215906|ASPHD2	ENSG00000128203|ENST00000215906|ASPHD2	ENSG00000128203|ENST00000215906|ASPHD2	MULTI-MSMS	A375_MHC_IP_R1	1	495.65545654296875	2	495.256174	988.497795	-0.37427	-0.00018536	-0.015438	-7.6458E-06	-0.38971	-0.00019301	495.2562942381771	55.304	0.61012	55.304	55.025	55.635	0					26	11	4	0	0	0	0.11715	1	19793	19793		47.594	19.966	1	3506400			682	4123	472	477	666	666					0.0030859689210274155
AEDHAKRK	8	Unmodified	_AEDHAKRK_					0	0	0			REV__ENSG00000100029|ENST00000354694|PES1	REV__ENSG00000100029|ENST00000354694|PES1	MULTI-SECPEP	A375_MHC_IP_R2	2	478.1592712402344	2	477.759415	953.504277	-0.60796	-0.00029046	0.2401	0.00011471	-0.36786	-0.00017575	477.7594745794508	32.798	0.45684	33.535	33.265	33.722	0.73692					16	8	3	0	0	0	0.96184	1	11734	11734		13.042	2.2185	1	2734600	+		683	17042	473	478	667	667					0.02566534843469981
AEDHDESLN	9	Unmodified	_AEDHDESLN_					0	0	0			REV__ENST00000457750.1_1_3:195346984-195347101:+|nuORF	REV__ENST00000457750.1_1_3:195346984-195347101:+|nuORF	MSMS	A375_MHC_IP_R1	1	515.166259765625	2	515.209618	1028.40468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.373	1	66.373	65.873	66.873	0								0	0	0	0.1535	1	24032	24032		15.847	1.2655	1		+		684	24944	474	479	668	668					-0.108383723517818
AEDHHYCY	8	Unmodified	_AEDHHYCY_					0	0	0			REV__nc|ENSG00000236699|Q9NXL2-1|ARHGEF38	REV__nc|ENSG00000236699|Q9NXL2-1|ARHGEF38	MULTI-SECPEP	A375_MHC_IP_R2	2	519.5933227539062	2	519.192716	1036.37088	-0.51893	-0.00026942	0.98744	0.00051267	0.46851	0.00024325	519.1932161615927	85.558	0.55826	86.294	85.933	86.492	0.73601					17	10	2	0	0	0	0.972	1	32571	32571		2.5775	0	1	1375800	+		685	22761	475	480	669	669					-0.14585072324530302
AEDHNVYIYY	10	Unmodified	_AEDHNVYIYY_					0	0	0		ENSG00000145725|ENST00000358359|PPIP5K2;nc|ENSG00000145725|O43314-2|PPIP5K2;nc|ENSG00000168781|Q6PFW1-6|PPIP5K1;ENST00000488768.5_1_15:43865553-43876720:-|nuORF;nc|ENSG00000168781|Q6PFW1-5|PPIP5K1;nc|ENSG00000168781|Q6PFW1-7|PPIP5K1;nc|ENSG00000168781|Q6PFW1-4|PPIP5K1;nc|ENSG00000168781|Q6PFW1-3|PPIP5K1;nc|ENSG00000168781|Q6PFW1-2|PPIP5K1;nc|ENSG00000168781|Q6PFW1|PPIP5K1;ENSG00000168781|ENST00000420765|PPIP5K1	ENSG00000145725|ENST00000358359|PPIP5K2	ENSG00000145725|ENST00000358359|PPIP5K2	MULTI-SECPEP	A375_MHC_IP_R2	2	643.5074462890625	2	643.788035	1285.56152	-0.62539	-0.00040262	-0.4373	-0.00028153	-1.0627	-0.00068415	643.7875957985958	64.386	0.40807	65.126	64.902	65.31	0.74023					11	7	2	0	0	0	0.88918	1	24404	24404		8.7454	2.115	1	1101900			686	5574	476	481	670	670					-0.06984087461455601
AEDIAKIKKF	10	Unmodified	_AEDIAKIKKF_					0	0	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3;ENST00000476448.1_1_6:52141011-52144220:-|nuORF	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-MSMS	A375_MHC_IP_R1	1	388.6324768066406	3	388.23253	1161.67576	0.30475	0.00011831	0.0032591	1.2653E-06	0.30801	0.00011958	388.23246557077306	28.617	0.55536	28.617	28.39	28.945	0					28	10	4	0	0	0	0.019617	2	8836	8805;8836		85.764	62.989	1	51517000			687	3050	477	482	671;672	672					0.10138847091275238
AEDIAKIKKF	10	Unmodified	_AEDIAKIKKF_					0	0	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3;ENST00000476448.1_1_6:52141011-52144220:-|nuORF	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-MSMS	A375_MHC_IP_R2	2	388.6325378417969	3	388.23253	1161.67576	-0.19353	-7.5135E-05	0.17209	6.681E-05	-0.021444	-8.3252E-06	388.2325444741484	27.898	0.4565	28.577	28.351	28.808	0.67857					31	8	5	0	0	0	0.032481	1	9567	9567		80.896	58.121	1	47983000			688	3050	477	482	673	673					0.10138847091275238
AEDIFRKAL	9	Unmodified	_AEDIFRKAL_					0	0	0		nc|ENSG00000152778|Q13325-2|IFIT5;ENSG00000152778|ENST00000371795|IFIT5	nc|ENSG00000152778|Q13325-2|IFIT5	nc|ENSG00000152778|Q13325-2|IFIT5	MULTI-MSMS	A375_MHC_IP_R1	1	355.26959228515625	3	354.869591	1061.58694	0.031484	1.1173E-05	0.05241	1.8599E-05	0.083894	2.9772E-05	354.8695940119272	50.171	0.66534	50.171	49.845	50.51	0					37	12	4	0	0	0	0.04699	1	17730	17730		65.474	19.734	1	19334000			689	5983	478	483	674	674					0.058614318515992636
AEDIFRKAL	9	Unmodified	_AEDIFRKAL_					0	0	0		nc|ENSG00000152778|Q13325-2|IFIT5;ENSG00000152778|ENST00000371795|IFIT5	nc|ENSG00000152778|Q13325-2|IFIT5	nc|ENSG00000152778|Q13325-2|IFIT5	MULTI-SECPEP	A375_MHC_IP_R1	1	532.2007446289062	2	531.800749	1061.58694	-0.56042	-0.00029803	-0.59062	-0.00031409	-1.151	-0.00061212	531.8008558299955	50.152	0.61394	50.152	49.896	50.51	0					23	11	3	0	0	0	0.036758	1	17746	17746		99.755	45.922	1	4872600			690	5983	478	483	675	675					0.058614318515992636
AEDIFRKAL	9	Unmodified	_AEDIFRKAL_					0	0	0		nc|ENSG00000152778|Q13325-2|IFIT5;ENSG00000152778|ENST00000371795|IFIT5	nc|ENSG00000152778|Q13325-2|IFIT5	nc|ENSG00000152778|Q13325-2|IFIT5	MULTI-MSMS	A375_MHC_IP_R2	2	354.92218017578125	3	354.869591	1061.58694	-0.4456	-0.00015813	0.18588	6.5965E-05	-0.25971	-9.2165E-05	354.8696282897833	49.192	0.80947	49.949	49.639	50.449	0.75737					46	15	5	0	0	0	0.073067	1	18514	18514		55.503	31.713	1	18247000			691	5983	478	483	676	676					0.058614318515992636
AEDIFRKAL	9	Unmodified	_AEDIFRKAL_					0	0	0		nc|ENSG00000152778|Q13325-2|IFIT5;ENSG00000152778|ENST00000371795|IFIT5	nc|ENSG00000152778|Q13325-2|IFIT5	nc|ENSG00000152778|Q13325-2|IFIT5	MULTI-SECPEP	A375_MHC_IP_R2	2	532.2005615234375	2	531.800749	1061.58694	-0.89508	-0.00047601	-0.083982	-4.4661E-05	-0.97906	-0.00052067	531.8008815569781	49.178	0.5058	49.936	49.741	50.247	0.75737					17	9	2	0	0	0	0.03341	1	18491	18491		103.42	72.783	1	4065700			692	5983	478	483	677	677					0.058614318515992636
AEDIKINW	8	Unmodified	_AEDIKINW_					0	0	0			REV__tr|U7T6X0|U7T6X0_FUSNUNodTfamilyeffluxtransporter,outermembranefactor(OMF)lipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00036PE=3SV=1	REV__tr|U7T6X0|U7T6X0_FUSNUNodTfamilyeffluxtransporter,outermembranefactor(OMF)lipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00036PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	495.1819763183594	2	494.758549	987.502546	-0.53435	-0.00026438	0.15991	7.9116E-05	-0.37444	-0.00018526	494.7587338495529	44.444	0.5589	45.213	45.035	45.594	0.76909					14	10	2	0	0	0	0.93661	1	16724	16724		21.747	9.2151	1	1155000	+		693	28870	479	484	678	678					0.008294810348502324
AEDIVYTLQ	9	Unmodified	_AEDIVYTLQ_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	A375_MHC_IP_R1	1	526.9537963867188	2	526.268947	1050.52334	-0.011726	-6.171E-06	-2.0368	-0.0010719	-2.0485	-0.0010781	526.2669921883497	48.919	1.0621	48.919	48.223	49.285	0					39	20	3	0	0	0	0.31062	1	17210	17210		29.841	5.82	1	12823000			694	1610	480	485	679	679					0.00010026623863268469
AEDIVYTLQ	9	Unmodified	_AEDIVYTLQ_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	A375_MHC_IP_R2	2	526.6681518554688	2	526.268947	1050.52334	-0.37543	-0.00019758	-0.23655	-0.00012449	-0.61199	-0.00032207	526.2684984319859	48.096	0.60368	48.858	48.632	49.235	0.76128					26	11	3	0	0	0	0.2415	1	18042	18042		34.932	2.1464	1	14680000			695	1610	480	485	680	680					0.00010026623863268469
AEDKENYKKF	10	Unmodified	_AEDKENYKKF_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;HSP90AB1|p.I628Sfs*56|1|0.12|ENSG00000096384|chr6:44253195-44253195|A/-|frameshift_variant;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1;ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-SECPEP	A375_MHC_IP_R1	1	424.9468078613281	3	424.547065	1270.61937	-0.30373	-0.00012895	0.055052	2.3372E-05	-0.24868	-0.00010558	424.5470183295243	19.243	0.14727	19.243	19.221	19.368	0					13	4	4	0	0	0	0.92199	1	4674	4674		14.957	11.081	1	56093000			696	2057;1722	481	486	681	681					-0.005118255360457624
AEDKENYKKFY	11	Unmodified	_AEDKENYKKFY_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;HSP90AB1|p.I628Sfs*56|1|0.12|ENSG00000096384|chr6:44253195-44253195|A/-|frameshift_variant;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1;ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	A375_MHC_IP_R1	1	479.1739501953125	3	478.901508	1433.6827	-0.66354	-0.00031777	0.038812	1.8587E-05	-0.62473	-0.00029918	478.90151071208936	24.067	0.60746	24.067	23.94	24.547	0					32	11	4	0	0	0	0.66366	1	6790	6790		11.065	7.2194	1	41807000			697	2057;1722	482	487	682	682					-0.016798848188045667
AEDKENYKKFY	11	Unmodified	_AEDKENYKKFY_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;HSP90AB1|p.I628Sfs*56|1|0.12|ENSG00000096384|chr6:44253195-44253195|A/-|frameshift_variant;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1;ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	A375_MHC_IP_R2	2	479.17388916015625	3	478.901508	1433.6827	-0.85695	-0.0004104	0.099631	4.7713E-05	-0.75732	-0.00036268	478.9015057669269	23.374	0.40417	24.005	23.828	24.232	0.63014					20	7	4	0	0	0	0.1757	1	7536	7536		41.567	26.028	1	34132000			698	2057;1722	482	487	683	683					-0.016798848188045667
AEDKENYKKFY	11	Unmodified	_AEDKENYKKFY_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;HSP90AB1|p.I628Sfs*56|1|0.12|ENSG00000096384|chr6:44253195-44253195|A/-|frameshift_variant;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1;ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-SECPEP	A375_MHC_IP_R2	2	478.654541015625	3	478.901508	1433.6827	-0.80503	-0.00038553	-0.12277	-5.8796E-05	-0.9278	-0.00044432	478.9014044115371	23.881	0.40845	24.511	24.283	24.691	0.63014					20	7	4	0	0	0	0.06544	1	7744	7744		72.272	56.734	1	16340000			699	2057;1722	482	487	684	684					-0.016798848188045667
AEDKPYAELW	10	Unmodified	_AEDKPYAELW_					0	0	0		nc|ENSG00000178802|P34949-2|MPI;ENSG00000178802|ENST00000352410|MPI;ENST00000568840.1_1_15:75182430-75185220:+|nuORF	nc|ENSG00000178802|P34949-2|MPI	nc|ENSG00000178802|P34949-2|MPI	MULTI-SECPEP	A375_MHC_IP_R2	2	610.6984252929688	2	611.292953	1220.57135	-0.51001	-0.00031177	-0.21838	-0.00013349	-0.72839	-0.00044526	611.2924906769337	77.284	0.40761	78.027	77.757	78.165	0.74293					10	7	2	0	0	0	0.68963	1	29307	29307		22.658	7.8198	1	1629200			700	8178	483	488	685	685					-0.030108994561032887
AEDKPYAELW	10	Unmodified	_AEDKPYAELW_					0	0	0		nc|ENSG00000178802|P34949-2|MPI;ENSG00000178802|ENST00000352410|MPI;ENST00000568840.1_1_15:75182430-75185220:+|nuORF	nc|ENSG00000178802|P34949-2|MPI	nc|ENSG00000178802|P34949-2|MPI	MULTI-MATCH	A375_MHC_IP_R1	1		2	611.292953	1220.57135	-0.2532	-0.00015478	-0.12689	-7.7569E-05	-0.38009	-0.00023235	611.7946367923473	78.008	0.35677	78.008	77.742	78.099	0	-0.0094211	6.1609E-05	NaN	22.658	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1710900			701	8178	483	488							-0.030108994561032887
AEDLAGESYTW	11	Unmodified	_AEDLAGESYTW_					0	0	0			REV__ENSG00000131686|ENST00000377443|CA6	REV__ENSG00000131686|ENST00000377443|CA6	MSMS	A375_MHC_IP_R1	1	621.2139892578125	2	621.269675	1240.5248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.651	1	67.651	67.151	68.151	0								0	0	0	0.16124	1	24518	24518		12.241	0	1		+		702	18616	484	489	686	686					-0.08584384078039875
AEDLKMARNL	10	Unmodified	_AEDLKMARNL_					0	0	0		ENSG00000183434|ENST00000310125|TFDP3	ENSG00000183434|ENST00000310125|TFDP3	ENSG00000183434|ENST00000310125|TFDP3	MSMS	A375_MHC_IP_R2	2	387.66656494140625	3	387.541257	1159.60194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.89	1	28.568	28.068	29.068	0.67857								0	0	0	0.15306	1	9582	9582		10.899	3.4219	1				703	8494	485	490	687	687					0.02852555657295852
AEDLLRFTV	9	Unmodified	_AEDLLRFTV_					0	0	0		nc|ENSG00000110025|Q9NRS6-2|SNX15;ENSG00000110025|ENST00000377244|SNX15;ENST00000526702.1_1_11:64795036-64803275:+|nuORF	nc|ENSG00000110025|Q9NRS6-2|SNX15	nc|ENSG00000110025|Q9NRS6-2|SNX15	MULTI-SECPEP	A375_MHC_IP_R1	1	532.7052612304688	2	532.292756	1062.57096	-0.58676	-0.00031233	-0.22883	-0.00012181	-0.81559	-0.00043413	532.29281819999	73.074	0.86122	73.074	72.779	73.64	0					18	16	2	0	0	0	0.69507	1	26752	26752		9.3831	0	1	1147200			704	2909	486	491	688	688					0.04217725614716983
AEDLNSRVSYW	11	Unmodified	_AEDLNSRVSYW_					0	0	0		ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-MSMS	A375_MHC_IP_R1	1	670.71728515625	2	670.317491	1338.62043	-0.77982	-0.00052273	0.34046	0.00022822	-0.43935	-0.00029451	670.3177541521875	66.123	0.55725	66.123	65.871	66.428	0					25	10	3	0	0	0	0.00066621	1	23919	23919		108.26	85.526	1	7333600			705	7089	487	492	689	689					-0.03533611167131312
AEDLNSRVSYW	11	Unmodified	_AEDLNSRVSYW_					0	0	0		ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-SECPEP	A375_MHC_IP_R2	2	670.2324829101562	2	670.317491	1338.62043	-0.91201	-0.00061134	0.27994	0.00018765	-0.63207	-0.00042369	670.3176099667219	65.529	0.55802	66.267	65.968	66.526	0.73811					26	10	3	0	0	0	0.00095239	1	24842	24842		146.48	118.85	1	6823500			706	7089	487	492	690	690					-0.03533611167131312
AEDLNTRVAY	10	Unmodified	_AEDLNTRVAY_					0	0	0		ENST00000503010.1_1_5:114951908-114961566:-|nuORF;ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2;nc|ENSG00000134970|Q9Y3B3-2|TMED7;ENST00000514548.1_1_5:114952016-114952166:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	576.6881713867188	2	576.288202	1150.56185	-0.1417	-8.1661E-05	0.35327	0.00020359	0.21157	0.00012192	576.2883593876276	40.329	0.50924	40.329	40.05	40.559	0					20	9	3	0	0	0	0.016128	1	13845	13845		107.1	53.267	1	10484000			707	4631	488	493	691	691					-0.007406677416156526
AEDLNTRVAY	10	Unmodified	_AEDLNTRVAY_					0	0	0		ENST00000503010.1_1_5:114951908-114961566:-|nuORF;ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2;nc|ENSG00000134970|Q9Y3B3-2|TMED7;ENST00000514548.1_1_5:114952016-114952166:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	576.6880493164062	2	576.288202	1150.56185	-0.20908	-0.00012049	0.49508	0.00028531	0.28599	0.00016481	576.2883957580174	39.677	0.55812	40.452	40.219	40.777	0.77451					23	10	4	0	0	0	0.021562	1	14645	14645		101.54	47.711	1	9188100			708	4631	488	493	692	692					-0.007406677416156526
AEDLNTRVAYW	11	Unmodified	_AEDLNTRVAYW_					0	0	0		ENST00000503010.1_1_5:114951908-114961566:-|nuORF;ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	669.7275390625	2	669.327859	1336.64116	-0.6056	-0.00040534	0.036911	2.4705E-05	-0.56869	-0.00038064	669.3278720384353	73.663	0.65889	73.663	73.336	73.995	0					37	12	4	0	0	0	2.4071E-05	1	26773	26773		158.08	127.44	1	21231000			709	4631	489	494	693	693					-0.01369020787478803
AEDLNTRVAYW	11	Unmodified	_AEDLNTRVAYW_					0	0	0		ENST00000503010.1_1_5:114951908-114961566:-|nuORF;ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	669.7269897460938	2	669.327859	1336.64116	-0.79567	-0.00053257	0.41164	0.00027552	-0.38403	-0.00025704	669.3281772168774	72.973	0.6109	73.709	73.379	73.99	0.73541					31	11	4	0	0	0	1.526E-05	1	27662	27662		185.27	160.28	1	19475000			710	4631	489	494	694	694					-0.01369020787478803
AEDLRAKAEW	10	Unmodified	_AEDLRAKAEW_					0	0	0		nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26;ENSG00000162923|ENST00000414423|WDR26;ENST00000489825.5_1_1:224607181-224612368:-|nuORF;ENST00000486652.5_1_1:224601027-224612368:-|nuORF;ENST00000443112.6_1_1:224601027-224621705:-|nuORF	nc|ENSG00000162923|Q9H7D7-2|WDR26	nc|ENSG00000162923|Q9H7D7-2|WDR26	MULTI-MSMS	A375_MHC_IP_R1	1	397.2715759277344	3	396.871772	1187.59349	0.074851	2.9706E-05	1.1905	0.00047247	1.2653	0.00050217	396.8715408676283	35.812	0.66298	35.812	35.421	36.084	0					45	12	5	0	0	0	0.084058	1	11940	11940		59.177	33.056	1	11729000			711	6613	490	495	695	695					0.007193250123236794
AEDLRAKAEW	10	Unmodified	_AEDLRAKAEW_					0	0	0		nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26;ENSG00000162923|ENST00000414423|WDR26;ENST00000489825.5_1_1:224607181-224612368:-|nuORF;ENST00000486652.5_1_1:224601027-224612368:-|nuORF;ENST00000443112.6_1_1:224601027-224621705:-|nuORF	nc|ENSG00000162923|Q9H7D7-2|WDR26	nc|ENSG00000162923|Q9H7D7-2|WDR26	MULTI-SECPEP	A375_MHC_IP_R2	2	397.27178955078125	3	396.871772	1187.59349	-0.33234	-0.0001319	0.13426	5.3283E-05	-0.19808	-7.8614E-05	396.87181569865675	35.09	0.50505	35.854	35.576	36.081	0.76338					15	9	2	0	0	0	0.33503	1	12685	12685		55.467	55.467	1	8251500			712	6613	490	495	696	696					0.007193250123236794
AEDLRAKAEW	10	Unmodified	_AEDLRAKAEW_					0	0	0		nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26;ENSG00000162923|ENST00000414423|WDR26;ENST00000489825.5_1_1:224607181-224612368:-|nuORF;ENST00000486652.5_1_1:224601027-224612368:-|nuORF;ENST00000443112.6_1_1:224601027-224621705:-|nuORF	nc|ENSG00000162923|Q9H7D7-2|WDR26	nc|ENSG00000162923|Q9H7D7-2|WDR26	MULTI-SECPEP	A375_MHC_IP_R2	2	595.2033081054688	2	594.80402	1187.59349	-0.78713	-0.00046819	-0.1877	-0.00011164	-0.97483	-0.00057983	594.8039922315684	35.09	0.3533	35.854	35.627	35.98	0.76338					10	6	2	0	0	0	0.78163	1	12738	12738		28.495	11.552	1	2738800			713	6613	490	495	697	697					0.007193250123236794
AEDLRAKAEW	10	Unmodified	_AEDLRAKAEW_					0	0	0		nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26;ENSG00000162923|ENST00000414423|WDR26;ENST00000489825.5_1_1:224607181-224612368:-|nuORF;ENST00000486652.5_1_1:224601027-224612368:-|nuORF;ENST00000443112.6_1_1:224601027-224621705:-|nuORF	nc|ENSG00000162923|Q9H7D7-2|WDR26	nc|ENSG00000162923|Q9H7D7-2|WDR26	MULTI-MATCH	A375_MHC_IP_R1	1		2	594.80402	1187.59349	-0.20364	-0.00012113	-0.21871	-0.00013009	-0.42235	-0.00025122	594.803863263355	35.784	0.50816	35.784	35.625	36.133	0	-0.034994	-1.5052E-05	NaN	28.495	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2555100			714	6613	490	495							0.007193250123236794
AEDLSEPVPN	10	Unmodified	_AEDLSEPVPN_					0	0	0		STRC|p.P1458S|1|0.24|ENSG00000242866|chr15:43603999-43603999|G/A|missense_variant	STRC|p.P1458S|1|0.24|ENSG00000242866|chr15:43603999-43603999|G/A|missense_variant	STRC|p.P1458S|1|0.24|ENSG00000242866|chr15:43603999-43603999|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	535.673828125	2	535.753661	1069.49277	-0.28611	-0.00015328	-1.8987	-0.0010172	-2.1848	-0.0011705	535.7528602409944	48.62	0.55729	48.62	48.375	48.933	0					16	10	2	0	0	0	0.70651	1	17281	17281		9.3831	1.2276	1	1259400			715	29266	491	496	698	698					-0.03919751761191037
AEDLVANFF	9	Unmodified	_AEDLVANFF_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	A375_MHC_IP_R2	2	513.6497802734375	2	513.250557	1024.48656	-0.83195	-0.000427	-0.52351	-0.00026869	-1.3555	-0.00069569	513.2506469846943	128.22	0.25467	128.46	128.3	128.55	0.23946					12	4	4	0	0	0	0.021889	1	50343	50343		81.89	23.211	1	9397200			716	4331	492	497	699	699					-0.024702252020460946
AEDLVANFF	9	Unmodified	_AEDLVANFF_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	513.250557	1024.48656	-0.40755	-0.00020918	-1.3872	-0.00071199	-1.7948	-0.00092116	513.2498200401134	128.51	0.35464	128.51	128.33	128.68	0	0.022969	-3.3503E-05	NaN	81.89	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17969000			717	4331	492	497							-0.024702252020460946
AEDLVLMGWAG	11	Unmodified	_AEDLVLMGWAG_					0	0	0			REV__DQX1|p.V166M|1|0.45|ENSG00000144045|chr2:74524243-74524243|C/T|missense_variant	REV__DQX1|p.V166M|1|0.45|ENSG00000144045|chr2:74524243-74524243|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	581.6840209960938	2	581.284074	1160.5536	-0.15832	-9.2031E-05	-0.29094	-0.00016912	-0.44926	-0.00026115	581.2839133866964	20.212	0.45506	20.212	19.98	20.435	0					20	8	3	0	0	0	0.66658	1	5134	5134		18.146	0.7037	1	14414000	+		718	16034	493	498	700	700					-0.02025937982580217
AEDLVLMGWAG	11	Unmodified	_AEDLVLMGWAG_					0	0	0			REV__DQX1|p.V166M|1|0.45|ENSG00000144045|chr2:74524243-74524243|C/T|missense_variant	REV__DQX1|p.V166M|1|0.45|ENSG00000144045|chr2:74524243-74524243|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	388.2586364746094	3	387.858475	1160.5536	0.27202	0.00010551	0.0064456	2.5E-06	0.27847	0.00010801	387.8584924069095	20.233	0.81152	20.233	19.827	20.638	0					46	15	5	0	0	0	0.90584	1	5130	5130		13.519	0	1	83921000	+		719	16034	493	498	701	701					-0.02025937982580217
AEDLVLMGWAG	11	Unmodified	_AEDLVLMGWAG_					0	0	0			REV__DQX1|p.V166M|1|0.45|ENSG00000144045|chr2:74524243-74524243|C/T|missense_variant	REV__DQX1|p.V166M|1|0.45|ENSG00000144045|chr2:74524243-74524243|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	581.284074	1160.5536	-0.15832	-9.2031E-05	-0.29094	-0.00016912	-0.44926	-0.00026115	581.2839133866964	20.212	0.45506	20.212	19.98	20.435	0	0	0	NaN	18.146	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14414000	+		720	16034	493	498							-0.02025937982580217
AEDLVVTKY	9	Unmodified	_AEDLVVTKY_					0	0	0		ENSG00000170515|ENST00000303305|PA2G4	ENSG00000170515|ENST00000303305|PA2G4	ENSG00000170515|ENST00000303305|PA2G4	MULTI-MSMS	A375_MHC_IP_R1	1	519.6792602539062	2	519.279315	1036.54408	-0.039363	-2.0441E-05	-0.45889	-0.00023829	-0.49825	-0.00025873	519.2790538793095	48.908	2.0322	48.908	48.375	50.408	0					119	39	5	0	0	0	0.0090873	2	17217	17217;17436		100.71	38.136	1	452360000			721	7515	494	499	702;703	702					0.027266170035318282
AEDLVVTKY	9	Unmodified	_AEDLVVTKY_					0	0	0		ENSG00000170515|ENST00000303305|PA2G4	ENSG00000170515|ENST00000303305|PA2G4	ENSG00000170515|ENST00000303305|PA2G4	MULTI-MSMS	A375_MHC_IP_R2	2	519.6787719726562	2	519.279315	1036.54408	-0.60025	-0.0003117	-0.091979	-4.7763E-05	-0.69223	-0.00035946	519.2792345660401	48.096	2.2284	48.858	48.429	50.657	0.76128					123	43	5	0	0	0	0.0096967	2	18014	18014;18506		110.79	46.832	1	577510000			722	7515	494	499	704;705	704					0.027266170035318282
AEDMETKIKN	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AEDMETKIKN_					1	0	0		ENSG00000126267|ENST00000649813|COX6B1;COX6B1|p.N23Tfs*22|1|0.48|ENSG00000126267|chr19:35651306-35651306|C/-|frameshift_variant	ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	MULTI-SECPEP	A375_MHC_IP_R1	1	611.1947631835938	2	610.795003	1219.57545	-0.17644	-0.00010777	-0.49555	-0.00030268	-0.67199	-0.00041045	610.7944686746013	35.395	0.40639	35.395	35.167	35.573	0					12	7	2	0	0	0	0.13439	1	11786	11786		83.278	67.129	1	3003200			723	4038	495	500	706	706					-0.025551780246814815
AEDMETKIKN	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AEDMETKIKN_					1	0	0		ENSG00000126267|ENST00000649813|COX6B1;COX6B1|p.N23Tfs*22|1|0.48|ENSG00000126267|chr19:35651306-35651306|C/-|frameshift_variant	ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	MULTI-SECPEP	A375_MHC_IP_R2	2	611.1939086914062	2	610.795003	1219.57545	-0.6943	-0.00042408	-1.0957	-0.00066922	-1.79	-0.0010933	610.7947473362699	34.778	0.4548	35.541	35.273	35.727	0.76338					16	8	3	0	0	0	0.22006	1	12594	12594		72.59	51.053	1	3052800			724	4038	495	500	707	707					-0.025551780246814815
AEDMETKIKNY	11	Oxidation (M)	_AEDM(Oxidation (M))ETKIKNY_		AEDM(1)ETKIKNY		AEDM(78)ETKIKNY	0	0	1		ENSG00000126267|ENST00000649813|COX6B1;COX6B1|p.N23Tfs*22|1|0.48|ENSG00000126267|chr19:35651306-35651306|C/-|frameshift_variant	ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	MULTI-MSMS	A375_MHC_IP_R1	1	453.6150207519531	3	453.214987	1356.62313	-0.24423	-0.00011069	0.060081	2.723E-05	-0.18415	-8.346E-05	453.21503267389994	19.859	0.55764	19.859	19.623	20.18	0					27	10	4	0	0	0	0.057718	1	4993	4993		77.867	77.867	1	9477000			725	4038	496	501	708	708		209			-0.040915238244906504
AEDMETKIKNY	11	Oxidation (M)	_AEDM(Oxidation (M))ETKIKNY_		AEDM(1)ETKIKNY		AEDM(86)ETKIKNY	0	0	1		ENSG00000126267|ENST00000649813|COX6B1;COX6B1|p.N23Tfs*22|1|0.48|ENSG00000126267|chr19:35651306-35651306|C/-|frameshift_variant	ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	MULTI-MSMS	A375_MHC_IP_R1	1	453.9495544433594	3	453.214987	1356.62313	0.17076	7.739E-05	-0.17582	-7.9682E-05	-0.0050583	-2.2925E-06	453.2148904203166	22.416	0.96158	22.416	22.062	23.024	0					42	18	3	0	0	0	0.022115	1	6003	6003		86.276	86.276	1	3338600			726	4038	496	501	709	709		209			-0.040915238244906504
AEDMETKIKNY	11	Oxidation (M)	_AEDM(Oxidation (M))ETKIKNY_		AEDM(1)ETKIKNY		AEDM(57)ETKIKNY	0	0	1		ENSG00000126267|ENST00000649813|COX6B1;COX6B1|p.N23Tfs*22|1|0.48|ENSG00000126267|chr19:35651306-35651306|C/-|frameshift_variant	ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	MULTI-MSMS	A375_MHC_IP_R2	2	453.6146545410156	3	453.214987	1356.62313	-0.51195	-0.00023202	0.11888	5.3878E-05	-0.39307	-0.00017814	453.2151639294937	19.035	0.24981	19.638	19.483	19.733	0.60308					12	4	4	0	0	0	0.17351	1	5809	5809		57.477	45.249	1	10152000			727	4038	496	501	710	710		209			-0.040915238244906504
AEDMETKIKNY	11	Oxidation (M)	_AEDM(Oxidation (M))ETKIKNY_		AEDM(1)ETKIKNY		AEDM(78)ETKIKNY	0	0	1		ENSG00000126267|ENST00000649813|COX6B1;COX6B1|p.N23Tfs*22|1|0.48|ENSG00000126267|chr19:35651306-35651306|C/-|frameshift_variant	ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	MULTI-MSMS	A375_MHC_IP_R2	2	453.61480712890625	3	453.214987	1356.62313	-0.58543	-0.00026532	0.35783	0.00016217	-0.2276	-0.00010315	453.21509439987767	22.121	1.1236	22.741	22.285	23.409	0.61932					41	21	3	0	0	0	0.056403	1	7016	7016		78.116	65.888	1	2202600			728	4038	496	501	711	711		209			-0.040915238244906504
AEDMETKIKNY	11	Unmodified	_AEDMETKIKNY_					0	0	0		ENSG00000126267|ENST00000649813|COX6B1;COX6B1|p.N23Tfs*22|1|0.48|ENSG00000126267|chr19:35651306-35651306|C/-|frameshift_variant	ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	MULTI-MSMS	A375_MHC_IP_R1	1	671.7211303710938	2	671.321385	1340.62822	-0.94561	-0.00063481	0.0065713	4.4115E-06	-0.93904	-0.00063039	671.3212533641122	30.578	0.40283	30.578	30.351	30.754	0					14	7	3	0	0	0	0.00034894	1	9722	9722		135.87	119.73	1	2915500			729	4038	496	502	712	712					-0.028472199618818195
AEDMETKIKNY	11	Unmodified	_AEDMETKIKNY_					0	0	0		ENSG00000126267|ENST00000649813|COX6B1;COX6B1|p.N23Tfs*22|1|0.48|ENSG00000126267|chr19:35651306-35651306|C/-|frameshift_variant	ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	MULTI-MSMS	A375_MHC_IP_R1	1	448.635009765625	3	447.883349	1340.62822	-0.42739	-0.00019142	-0.14513	-6.5002E-05	-0.57252	-0.00025642	447.8833772283518	30.56	0.60672	30.56	30.301	30.908	0					23	11	3	0	0	0	0.17351	1	9746	9746		57.477	48.233	1	10902000			730	4038	496	502	713	713					-0.028472199618818195
AEDMETKIKNY	11	Unmodified	_AEDMETKIKNY_					0	0	0		ENSG00000126267|ENST00000649813|COX6B1;COX6B1|p.N23Tfs*22|1|0.48|ENSG00000126267|chr19:35651306-35651306|C/-|frameshift_variant	ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	MULTI-MSMS	A375_MHC_IP_R2	2	448.634765625	3	447.883349	1340.62822	-0.69045	-0.00030924	-0.060863	-2.7259E-05	-0.75131	-0.0003365	447.8834138382668	29.867	0.50677	30.565	30.385	30.892	0.69872					30	9	5	0	0	0	0.022115	1	10487	10487		86.276	74.645	1	16926000			731	4038	496	502	714	714					-0.028472199618818195
AEDMETKIKNY	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AEDMETKIKNY_					1	0	0		ENSG00000126267|ENST00000649813|COX6B1;COX6B1|p.N23Tfs*22|1|0.48|ENSG00000126267|chr19:35651306-35651306|C/-|frameshift_variant	ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	MULTI-MSMS	A375_MHC_IP_R1	1	692.7261962890625	2	692.326667	1382.63878	-0.60042	-0.00041569	0.21535	0.00014909	-0.38507	-0.0002666	692.3266221614878	57.468	0.4572	57.468	57.263	57.72	0					13	8	3	0	0	0	0.00051056	1	20620	20620		110.18	94.03	1	2150900			732	4038	496	503	715	715					-0.03723237307440286
AEDMETKIKNY	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AEDMETKIKNY_					1	0	0		ENSG00000126267|ENST00000649813|COX6B1;COX6B1|p.N23Tfs*22|1|0.48|ENSG00000126267|chr19:35651306-35651306|C/-|frameshift_variant	ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	MULTI-MSMS	A375_MHC_IP_R2	2	692.7254028320312	2	692.326667	1382.63878	-1.121	-0.00077608	0.55713	0.00038572	-0.56384	-0.00039036	692.3266050726845	56.898	0.3563	57.648	57.459	57.815	0.75015					15	6	3	0	0	0	0.00028404	1	21530	21530		125.66	110.41	1	2498100			733	4038	496	503	716	716					-0.03723237307440286
AEDPTERAAP	10	Unmodified	_AEDPTERAAP_					0	0	0		ENST00000468672.5_1_1:209929538-209935876:+|nuORF	ENST00000468672.5_1_1:209929538-209935876:+|nuORF	ENST00000468672.5_1_1:209929538-209935876:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	528.1654052734375	2	528.751453	1055.48835	-0.40485	-0.00021406	-3.3629	-0.0017781	-3.7677	-0.0019922	528.7484134524015	47.769	0.2521	47.769	47.567	47.819	0					6	4	2	0	0	0	0.87163	1	16813	16813		9.3831	3.6513	1	482010			734	12309	497	504	717	717					-0.03717216184099925
AEDPTISLL	9	Unmodified	_AEDPTISLL_					0	0	0		ENST00000532338.5_1_8:145534845-145537990:+|nuORF;ENSG00000185122|ENST00000528838|HSF1;ENST00000527328.5_1_8:145537548-145537990:+|nuORF	ENST00000532338.5_1_8:145534845-145537990:+|nuORF	ENST00000532338.5_1_8:145534845-145537990:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	479.7023010253906	2	479.758215	957.501877	-0.51772	-0.00024838	0.19785	9.4918E-05	-0.31987	-0.00015346	479.7582103868852	105.27	0.4061	106.03	105.77	106.17	0.76308					12	7	2	0	0	0	0.098973	1	39787	39787		50.855	10.406	1	1462500			735	8642	498	505	718	718					0.021426415951623312
AEDPTISLL	9	Unmodified	_AEDPTISLL_					0	0	0		ENST00000532338.5_1_8:145534845-145537990:+|nuORF;ENSG00000185122|ENST00000528838|HSF1;ENST00000527328.5_1_8:145537548-145537990:+|nuORF	ENST00000532338.5_1_8:145534845-145537990:+|nuORF	ENST00000532338.5_1_8:145534845-145537990:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	958.9083251953125	1	958.509154	957.501877	-0.083485	-8.0021E-05	0.63219	0.00060596	0.54871	0.00052594	958.5098314462161	105.25	0.5083	106.01	105.72	106.22	0.76308					14	9	2	0	0	0	0.034481	1	39826	39826		71.134	16.36	1	2362100			736	8642	498	505	719	719					0.021426415951623312
AEDPTISLL	9	Unmodified	_AEDPTISLL_					0	0	0		ENST00000532338.5_1_8:145534845-145537990:+|nuORF;ENSG00000185122|ENST00000528838|HSF1;ENST00000527328.5_1_8:145537548-145537990:+|nuORF	ENST00000532338.5_1_8:145534845-145537990:+|nuORF	ENST00000532338.5_1_8:145534845-145537990:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	958.509154	957.501877	0.22042	0.00021128	-0.4776	-0.00045779	-0.25718	-0.00024651	958.5087091282905	106.09	0.45921	106.09	105.86	106.32	0	0.036558	-0.00019706	NaN	71.134	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3482100			737	8642	498	505							0.021426415951623312
AEDRSLRIW	9	Unmodified	_AEDRSLRIW_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	A375_MHC_IP_R1	1	382.9403076171875	3	382.540245	1144.59891	0.15083	5.77E-05	0.02585	9.8885E-06	0.17668	6.7588E-05	382.5401809876417	53.043	0.50512	53.043	52.796	53.301	0					21	9	3	0	0	0	0.33243	1	18917	18917		28.234	16.059	1	3203600			738	4853	499	506	720	720					0.03239048594787164
AEDRSLRIW	9	Unmodified	_AEDRSLRIW_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	A375_MHC_IP_R2	2	382.9400634765625	3	382.540245	1144.59891	-0.48344	-0.00018493	0.2125	8.1289E-05	-0.27094	-0.00010365	382.5402460441505	52.223	0.60747	52.975	52.729	53.336	0.75225					17	11	2	0	0	0	0.33243	1	19685	19685		28.234	16.059	1	3639700			739	4853	499	506	721	721					0.03239048594787164
AEDRSLRIW	9	Unmodified	_AEDRSLRIW_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	382.540245	1144.59891	-0.48344	-0.00018493	0.2125	8.1289E-05	-0.27094	-0.00010365	382.5402460441505	52.223	0.60747	52.975	52.729	53.336	0.75225	-0.034006	0.00010158	NaN	28.234	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3639700			740	4853	499	506							0.03239048594787164
AEDSARTLLY	10	Unmodified	_AEDSARTLLY_					0	0	0		nc|ENSG00000174989|Q8N3Y1-2|FBXW8;ENSG00000174989|ENST00000652555|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	MULTI-SECPEP	A375_MHC_IP_R1	1	570.1902465820312	2	569.790578	1137.5666	-0.29352	-0.00016725	-0.035295	-2.0111E-05	-0.32882	-0.00018736	569.7906140415723	52.314	0.45607	52.314	52.034	52.49	0					17	8	3	0	0	0	0.71464	1	18654	18654		27.223	11.074	1	3113600			741	7920	500	507	722	722					0.0033221640117062634
AEDSVMDHHF	10	Unmodified	_AEDSVMDHHF_					0	0	0		ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1;nc|ENSG00000142864|Q8NC51-4|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1	ENSG00000142864|ENST00000361219|SERBP1	ENSG00000142864|ENST00000361219|SERBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	396.27545166015625	3	396.497717	1186.47132	0.054604	2.165E-05	0.036973	1.466E-05	0.091577	3.631E-05	396.49774510631323	35.322	0.25377	35.322	35.167	35.421	0					7	4	2	0	0	0	0.88361	1	11736	11736		20.581	17.261	1	827080			742	5334	501	508	723	723					-0.11445460061554513
AEDSVMDHHF	10	Unmodified	_AEDSVMDHHF_					0	0	0		ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1;nc|ENSG00000142864|Q8NC51-4|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1	ENSG00000142864|ENST00000361219|SERBP1	ENSG00000142864|ENST00000361219|SERBP1	MULTI-MATCH	A375_MHC_IP_R2	2		3	396.497717	1186.47132	-0.31142	-0.00012348	-0.034624	-1.3728E-05	-0.34604	-0.0001372	396.49763865414457	34.604	0.40618	35.368	35.119	35.525	0.76338	0.022788	-1.5034E-05	NaN	20.581	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1557400			743	5334	501	508							-0.11445460061554513
AEDSWDELL	9	Unmodified	_AEDSWDELL_					0	0	0		ENSG00000186205|ENST00000366910|MTARC1	ENSG00000186205|ENST00000366910|MTARC1	ENSG00000186205|ENST00000366910|MTARC1	MULTI-MSMS	A375_MHC_IP_R1	1	539.6403198242188	2	539.240386	1076.46622	-0.49356	-0.00026615	0.47931	0.00025846	-0.014254	-7.6862E-06	539.2405150679764	51.803	0.40767	51.803	51.575	51.982	0					12	7	2	0	0	0	0.55818	1	18432	18432		16.942	3.0362	1	1881600			744	8730	502	509	724	724					-0.06895440652510842
AEDVKETEDE	10	Unmodified	_AEDVKETEDE_					0	0	0		ENSG00000136463|ENST00000258975|TACO1	ENSG00000136463|ENST00000258975|TACO1	ENSG00000136463|ENST00000258975|TACO1	MULTI-SECPEP	A375_MHC_IP_R1	1	388.25396728515625	3	388.834941	1163.48299	0.14915	5.7996E-05	3.0529	0.0011871	3.202	0.0012451	388.8358033317039	61.33	0.20573	61.33	61.176	61.382	0					6	3	2	0	0	0	0.94163	1	22106	22106		6.1918	0	1	430060			745	4792	503	510	725	725					-0.09220984557191514
AEDVKGFFNM	10	Unmodified	_AEDVKGFFNM_					0	0	0		tr|U7T207|U7T207_FUSNUGlycerol-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00422PE=4SV=1	tr|U7T207|U7T207_FUSNUGlycerol-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00422PE=4SV=1	tr|U7T207|U7T207_FUSNUGlycerol-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00422PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	579.1668090820312	2	579.268424	1156.5223	-0.68551	-0.00039709	0.67128	0.00038885	-0.01423	-8.2428E-06	579.2685979418045	56.825	0.81753	57.575	57.152	57.969	0.75015					33	15	3	0	0	0	0.8528	1	21451	21451		21.537	3.3906	1	14654000			746	29917	504	511	726	726					-0.04970511016676937
AEDVKLLQF	9	Unmodified	_AEDVKLLQF_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-SECPEP	A375_MHC_IP_R1	1	532.1946411132812	2	531.795132	1061.57571	-0.63542	-0.00033791	0.91509	0.00048664	0.27968	0.00014873	532.2974295598746	87.664	0.50861	87.664	87.441	87.949	0					14	9	2	0	0	0	0.63622	1	32184	32184		24.991	12.75	1	1498100			747	8339	505	512	727	727					0.04738609757487211
AEDWLDLVR	9	Unmodified	_AEDWLDLVR_					0	0	0		ENST00000582201.5_1_17:62781409-62811241:-|nuORF	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	559.703369140625	2	558.787838	1115.56112	-0.58761	-0.00032835	0.43377	0.00024239	-0.15384	-8.5964E-05	558.7879896328996	46.52	0.70662	46.52	46.245	46.952	0					32	13	3	0	0	0	0.35581	1	16328	16328		26.884	5.137	1	30282000			748	13689	506	513	728	728					0.007965376093352461
AEDYPIDLY	9	Unmodified	_AEDYPIDLY_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-SECPEP	A375_MHC_IP_R1	1	550.1532592773438	2	549.75313	1097.49171	-0.50356	-0.00027683	0.32555	0.00017897	-0.17801	-9.786E-05	549.7532742888002	103.15	0.91637	103.15	102.76	103.68	0					38	17	3	0	0	0	0.096726	1	37866	37866		71.134	29.039	1	7637800			749	5837	507	514	729	729					-0.05313966130074732
AEDYPIDLY	9	Unmodified	_AEDYPIDLY_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-SECPEP	A375_MHC_IP_R2	2	550.1529541015625	2	549.75313	1097.49171	-0.78407	-0.00043105	0.13977	7.6837E-05	-0.6443	-0.00035421	549.7530542115486	102.51	0.76354	103.28	102.92	103.68	0.76428					32	14	3	0	0	0	0.14422	1	38798	38798		61.357	19.263	1	6765400			750	5837	507	514	730	730					-0.05313966130074732
AEDYRSYRF	9	Unmodified	_AEDYRSYRF_					0	0	0		ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	MSMS	A375_MHC_IP_R2	2	402.9206848144531	3	402.856122	1205.54654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.306	1	38.077	37.577	38.577	0.7709								0	0	0	0.15003	1	13642	13642		15.739	3.511	1				751	5153	508	515	731	731					-0.048015345388193964
AEEANFGVEDC	11	Unmodified	_AEEANFGVEDC_					0	0	0			REV__ENSG00000165169|ENST00000378578|DYNLT3	REV__ENSG00000165169|ENST00000378578|DYNLT3	MSMS	A375_MHC_IP_R2	2	592.1862182617188	2	592.232235	1182.44992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.098	1	88.83	88.33	89.33	0.7318								0	0	0	0.16258	1	33521	33521		5.2969	0.54088	1		+		752	20556	509	516	732	732					-0.13400889880904288
AEEAPENLPY	10	Unmodified	_AEEAPENLPY_					0	0	0		nc|ENSG00000187624|Q6ZQX7-2|LIAT1;ENSG00000187624|ENST00000360127|C17orf97;nc|ENSG00000187624|Q6ZQX7-3|LIAT1;nc|ENSG00000187624|Q6ZQX7|LIAT1	nc|ENSG00000187624|Q6ZQX7-2|LIAT1	nc|ENSG00000187624|Q6ZQX7-2|LIAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	566.1719360351562	2	566.761486	1131.50842	-0.50778	-0.00028779	-0.52675	-0.00029854	-1.0345	-0.00058633	566.7611947776269	52.7	0.30499	52.7	52.592	52.897	0					7	5	2	0	0	0	0.90513	1	18793	18793		12.241	3.4953	1	1103700			753	8842	510	517	733	733					-0.052074652441206126
AEEAPYDAIH	10	Unmodified	_AEEAPYDAIH_					0	0	0		ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	MSMS	A375_MHC_IP_R1	1	558.1976318359375	2	558.253828	1114.4931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.477	1	66.477	65.977	66.977	0								0	0	0	0.14925	1	24073	24073		19.257	7.0163	1				754	3655	511	518	734	734					-0.05956332041341739
AEEARTTYPD	10	Unmodified	_AEEARTTYPD_					0	0	0			REV__ENSG00000185800|ENST00000270223|DMWD	REV__ENSG00000185800|ENST00000270223|DMWD	MULTI-SECPEP	A375_MHC_IP_R1	1	576.6177978515625	2	576.762017	1151.50948	-0.49115	-0.00028328	0.3496	0.00020164	-0.14155	-8.1638E-05	577.2636693477514	26.601	0.50445	26.601	26.423	26.928	0					16	9	2	0	0	0	0.83355	1	7993	7993		17.113	6.289	1	3540100	+		755	21921	512	519	735	735					-0.060212508752329086
AEECKGMIVT	10	Unmodified	_AEECKGMIVT_					0	0	0		nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;nc|ENSG00000113360|Q9NRR4-3|DROSHA;ENST00000511803.1_1_5:31468044-31472325:-|nuORF;ENST00000512124.6_1_5:31467712-31485015:-|nuORF	nc|ENSG00000113360|Q9NRR4-2|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	MULTI-MSMS	A375_MHC_IP_R2	2	541.2001953125	2	540.756835	1079.49912	-0.81345	-0.00043988	2.7344	0.0014786	1.9209	0.0010388	541.258841361234	27.191	0.50967	27.869	27.741	28.251	0.67857					12	9	2	0	0	0	0.69306	1	9420	9420		13.906	2.2658	1	2402200			756	3143	513	520	736	736					-0.03745273125650783
AEEDLWPKW	9	Unmodified	_AEEDLWPKW_					0	0	0			REV__nc|ENSG00000172594|Q92484-2|SMPDL3A	REV__nc|ENSG00000172594|Q92484-2|SMPDL3A	MSMS	A375_MHC_IP_R2	2	587.18212890625	2	587.282389	1172.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.036	1	52.788	52.288	53.288	0.75225								0	0	0	0.15486	1	19601	19601		10.824	0.75	1		+		757	21159	514	521	737	737					-0.02914864764943559
AEEDPAHAF	9	Unmodified	_AEEDPAHAF_					0	0	0		ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MULTI-MSMS	A375_MHC_IP_R1	1	494.11407470703125	2	493.714339	985.414125	-0.37545	-0.00018537	-0.42573	-0.00021019	-0.80118	-0.00039555	493.714098623365	36.176	0.60776	36.176	35.881	36.489	0					20	11	2	0	0	0	0.03063	2	12057	11992;12057		74.423	40.32	1	4799600			758	7476	515	522	738;739	739					-0.07916559275611235
AEEDPAHAF	9	Unmodified	_AEEDPAHAF_					0	0	0		ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MULTI-MSMS	A375_MHC_IP_R2	2	494.11383056640625	2	493.714339	985.414125	-0.7278	-0.00035933	-0.39954	-0.00019726	-1.1273	-0.00055659	493.71411696125404	35.401	0.60801	36.164	35.929	36.537	0.76338					23	11	3	0	0	0	0.042197	1	12845	12845		67.344	33.241	1	5061100			759	7476	515	522	740	740					-0.07916559275611235
AEEDSGDMCD	10	Unmodified	_AEEDSGDMCD_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MSMS	A375_MHC_IP_R2	2	536.1669311523438	2	536.165704	1070.31685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.172	1	58.92	58.42	59.42	0.74894								0	0	0	0.15591	1	22004	22004		1.6526	1.0511	1		+		760	18241	516	523	741	741					-0.21549077329086685
AEEEDDADDD	10	Unmodified	_AEEEDDADDD_					0	0	0			REV__nc|ENSG00000185008|Q9HCK4|ROBO2	REV__nc|ENSG00000185008|Q9HCK4|ROBO2	MSMS	A375_MHC_IP_R1	1	562.1688842773438	2	562.18092	1122.34729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.147	1	42.147	41.647	42.647	0								0	0	0	0.15332	1	14590	14590		10.074	3.3508	1		+		761	21857	517	524	742	742					-0.20899304138697516
AEEEEEEEVPR	11	Unmodified	_AEEEEEEEVPR_					0	0	0		ENSG00000139718|ENST00000604567|SETD1B	ENSG00000139718|ENST00000604567|SETD1B	ENSG00000139718|ENST00000604567|SETD1B	MULTI-MSMS	A375_MHC_IP_R1	1	673.747314453125	2	673.291336	1344.56812	-0.53572	-0.00036069	2.0687	0.0013929	1.533	0.0010322	673.2926992540848	51.143	0.60889	51.143	50.966	51.575	0					18	11	2	0	0	0	0.73378	1	18219	18219		5.2969	0.39987	1	2317600			762	5104	518	525	743	743					-0.09038239091432843
AEEEEEEEVPR	11	Unmodified	_AEEEEEEEVPR_					0	0	0		ENSG00000139718|ENST00000604567|SETD1B	ENSG00000139718|ENST00000604567|SETD1B	ENSG00000139718|ENST00000604567|SETD1B	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	673.291336	1344.56812	-0.53572	-0.00036069	2.0687	0.0013929	1.533	0.0010322	673.2926992540848	51.143	0.60889	51.143	50.966	51.575	0	-0.0056773	-0.00087606	NaN	5.2969	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2317600			763	5104	518	525							-0.09038239091432843
AEEEEEEEVPR	11	Unmodified	_AEEEEEEEVPR_					0	0	0		ENSG00000139718|ENST00000604567|SETD1B	ENSG00000139718|ENST00000604567|SETD1B	ENSG00000139718|ENST00000604567|SETD1B	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	673.291336	1344.56812	-0.8794	-0.00059209	2.889	0.0019451	2.0096	0.001353	673.2934365760375	50.401	0.40621	51.155	51.006	51.412	0.75406	0.0056773	0.00022848	NaN	5.2969	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1954700			764	5104	518	525							-0.09038239091432843
AEEEEGRQGRP	11	Unmodified	_AEEEEGRQGRP_					0	0	0		ENST00000244745.3_2_6:21596320-21596539:+|nuORF	ENST00000244745.3_2_6:21596320-21596539:+|nuORF	ENST00000244745.3_2_6:21596320-21596539:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	419.6109313964844	3	419.865457	1256.57454	0.36855	0.00015474	-4.1253	-0.0017321	-3.7567	-0.0015773	420.1981579101365	21.602	0.25251	21.602	21.454	21.706	0					8	4	2	0	0	0	0.98994	1	5698	5698		14.171	2.5394	1	516400			765	10181	519	526	744	744					-0.043482563493626
AEEEFVQRF	9	Unmodified	_AEEEFVQRF_					0	0	0		ENST00000472220.1_1_2:105708813-105716216:+|nuORF;ENSG00000135972|ENST00000258455|MRPS9	ENST00000472220.1_1_2:105708813-105716216:+|nuORF	ENST00000472220.1_1_2:105708813-105716216:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	578.1773071289062	2	577.77747	1153.54039	-0.25754	-0.0001488	0.017475	1.0096E-05	-0.24006	-0.0001387	577.7774481789035	58.616	0.50828	58.616	58.43	58.938	0					15	9	2	0	0	0	0.03109	1	21064	21064		82.529	40.69	1	2213800			766	4736	520	527	745	745					-0.03024052770342678
AEEEFVQRF	9	Unmodified	_AEEEFVQRF_					0	0	0		ENST00000472220.1_1_2:105708813-105716216:+|nuORF;ENSG00000135972|ENST00000258455|MRPS9	ENST00000472220.1_1_2:105708813-105716216:+|nuORF	ENST00000472220.1_1_2:105708813-105716216:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	578.1768188476562	2	577.77747	1153.54039	-0.45782	-0.00026452	-0.096226	-5.5597E-05	-0.55405	-0.00032012	577.777134550135	57.872	0.40591	58.621	58.323	58.729	0.74895					11	7	2	0	0	0	0.10103	1	21905	21905		62.573	33.491	1	2547300			767	4736	520	527	746	746					-0.03024052770342678
AEEEGLRLF	9	Unmodified	_AEEEGLRLF_					0	0	0		ENST00000483371.1_1_1:109171009-109177769:+|nuORF;nc|ENSG00000162636|Q5T8I3-2|EEIG2;ENSG00000162636|ENST00000370035|EEIG2	ENST00000483371.1_1_1:109171009-109177769:+|nuORF	ENST00000483371.1_1_1:109171009-109177769:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	532.1591796875	2	532.274564	1062.53457	-0.75803	-0.00040348	0.91561	0.00048735	0.15758	8.3874E-05	532.2750935488646	80.827	0.65922	80.827	80.39	81.049	0					15	12	2	0	0	0	0.24324	1	29499	29499		53.833	32.086	1	1583000			768	6569	521	528	747	747					0.0058084871798200766
AEEEGVNKF	9	Unmodified	_AEEEGVNKF_					0	0	0		ENSG00000087074|ENST00000200453|PPP1R15A;PPP1R15A|p.E354Gfs*3|1|0.79|ENSG00000087074|chr19:48874291-48874292|-/G|frameshift_variant	ENSG00000087074|ENST00000200453|PPP1R15A	ENSG00000087074|ENST00000200453|PPP1R15A	MULTI-SECPEP	A375_MHC_IP_R1	1	512.142822265625	2	511.743096	1021.47164	-0.55698	-0.00028503	-0.22783	-0.00011659	-0.7848	-0.00040162	511.7430283104903	27.508	0.45479	27.508	27.331	27.786	0					20	8	3	0	0	0	0.011031	1	8358	8358		128.93	72.755	1	9131300			769	1851	522	529	748	748					-0.03823717070042676
AEEEGVNKF	9	Unmodified	_AEEEGVNKF_					0	0	0		ENSG00000087074|ENST00000200453|PPP1R15A;PPP1R15A|p.E354Gfs*3|1|0.79|ENSG00000087074|chr19:48874291-48874292|-/G|frameshift_variant	ENSG00000087074|ENST00000200453|PPP1R15A	ENSG00000087074|ENST00000200453|PPP1R15A	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1429443359375	2	511.743096	1021.47164	-0.92224	-0.00047195	-0.038995	-1.9955E-05	-0.96124	-0.00049191	511.7431169004297	26.934	0.46202	27.594	27.414	27.876	0.65992					15	8	2	0	0	0	0.038931	1	9155	9155		100.09	56.232	1	7637200			770	1851	522	529	749	749					-0.03823717070042676
AEEEHKSKW	9	Unmodified	_AEEEHKSKW_					0	0	0			REV__ENSG00000118873|ENST00000358951|RAB3GAP2	REV__ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	573.0296630859375	2	572.275095	1142.53564	-0.3505	-0.00020058	-0.19362	-0.0001108	-0.54412	-0.00031139	572.2746842237302	52.566	0.2038	52.566	52.49	52.694	0					6	3	2	0	0	0	0.65527	1	18674	18674		17.113	2.2746	1	993700	+		771	18054	523	530	750	750					-0.029929369130968553
AEEEHLGILGP	11	Unmodified	_AEEEHLGILGP_					0	0	0		ENST00000490639.5_1_3:148895590-148939579:-|nuORF;ENSG00000047457|ENST00000264613|CP	ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENST00000490639.5_1_3:148895590-148939579:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	389.26824951171875	3	388.868027	1163.58225	-0.13602	-5.2895E-05	0.51593	0.00020063	0.37991	0.00014773	388.86806586132155	30.342	1.2131	30.342	30.099	31.312	0					67	23	4	0	0	0	0.66658	1	9845	9845		10.315	1.0715	1	55428000			772	1200	524	531	751	751					0.007005029181982536
AEEEHLGILGP	11	Unmodified	_AEEEHLGILGP_					0	0	0		ENST00000490639.5_1_3:148895590-148939579:-|nuORF;ENSG00000047457|ENST00000264613|CP	ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENST00000490639.5_1_3:148895590-148939579:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	583.1568603515625	2	582.798403	1163.58225	-0.87006	-0.00050707	0.90007	0.00052456	0.030012	1.7491E-05	582.7986508199351	29.753	0.70664	30.452	30.185	30.892	0.69872					46	13	5	0	0	0	0.75408	1	10538	10538		34.402	3.1334	1	34656000			773	1200	524	531	752	752					0.007005029181982536
AEEEIGTPRKF	11	Unmodified	_AEEEIGTPRKF_					0	0	0		ENSG00000080839|ENST00000373664|RBL1;nc|ENSG00000080839|P28749-2|RBL1	ENSG00000080839|ENST00000373664|RBL1	ENSG00000080839|ENST00000373664|RBL1	MULTI-MSMS	A375_MHC_IP_R1	1	426.9565734863281	3	426.222582	1275.64592	-0.47371	-0.00020191	0.28626	0.00012201	-0.18745	-7.9897E-05	426.22261733914297	29.885	0.59858	29.885	29.703	30.301	0					24	11	3	0	0	0	0.082464	1	9445	9445		54.259	35.115	1	12338000			774	1723	525	532	753	753					0.019118633552807296
AEEEIGTPRKF	11	Unmodified	_AEEEIGTPRKF_					0	0	0		ENSG00000080839|ENST00000373664|RBL1;nc|ENSG00000080839|P28749-2|RBL1	ENSG00000080839|ENST00000373664|RBL1	ENSG00000080839|ENST00000373664|RBL1	MULTI-MSMS	A375_MHC_IP_R2	2	639.6907958984375	2	638.830234	1275.64592	-1.5917	-0.0010168	0.38931	0.0002487	-1.2024	-0.0007681	638.8303667660145	29.293	0.35542	29.991	29.88	30.236	0.69872					12	6	2	0	0	0	0.72494	1	10170	10170		13.615	8.7179	1	2709800			775	1723	525	532	754	754					0.019118633552807296
AEEEIGTPRKF	11	Unmodified	_AEEEIGTPRKF_					0	0	0		ENSG00000080839|ENST00000373664|RBL1;nc|ENSG00000080839|P28749-2|RBL1	ENSG00000080839|ENST00000373664|RBL1	ENSG00000080839|ENST00000373664|RBL1	MULTI-MSMS	A375_MHC_IP_R2	2	426.9568176269531	3	426.222582	1275.64592	-0.99974	-0.00042611	0.38839	0.00016554	-0.61135	-0.00026057	426.22274892939186	29.34	0.60545	30.038	29.73	30.335	0.69872					27	11	3	0	0	0	0.036274	1	10206	10206		61.165	42.021	1	13244000			776	1723	525	532	755	755					0.019118633552807296
AEEEIMKKI	9	Unmodified	_AEEEIMKKI_					0	0	0		ENSG00000136231|ENST00000258729|IGF2BP3;ENST00000454907.1_1_6:167115266-167115902:-|nuORF	ENSG00000136231|ENST00000258729|IGF2BP3	ENSG00000136231|ENST00000258729|IGF2BP3	MULTI-MSMS	A375_MHC_IP_R2	2	364.9230651855469	3	364.198609	1089.574	-0.36734	-0.00013378	0.073288	2.6691E-05	-0.29405	-0.00010709	364.198596664791	33.414	0.35612	34.167	33.942	34.298	0.75225					14	6	3	0	0	0	0.4867	1	11929	11929		19.362	0	1	10648000			777	4766	526	533	756	756					0.0327923267720962
AEEEITKKRL	10	Unmodified	_AEEEITKKRL_					0	0	0		tr|U7T308|U7T308_FUSNUCation/H+exchangerdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00349PE=4SV=1	tr|U7T308|U7T308_FUSNUCation/H+exchangerdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00349PE=4SV=1	tr|U7T308|U7T308_FUSNUCation/H+exchangerdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00349PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	608.6859130859375	2	608.848427	1215.6823	-0.19495	-0.00011869	3.9925	0.0024308	3.7975	0.0023121	608.8517563277658	88.82	0.35646	88.82	88.51	88.867	0					10	6	2	0	0	0	0.93799	1	32635	32635		3.5965	0	1	1611800			778	29953	527	534	757	757					0.08308740252005009
AEEEKELMPF	10	Unmodified	_AEEEKELMPF_					0	0	0			REV__ENST00000398125.5_1_4:2916713-2930247:+|nuORF	REV__ENST00000398125.5_1_4:2916713-2930247:+|nuORF	MSMS	A375_MHC_IP_R2	2	611.7089233398438	2	611.786647	1221.55874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.74	1	30.439	29.939	30.939	0.69872								0	0	0	0.14483	1	10409	10409		27.629	1.3607	1		+		779	24373	528	535	758	758					-0.043176789106382785
AEEELECSALA	11	Unmodified	_AEEELECSALA_					0	0	0		ENSG00000133980|ENST00000256362|VRTN	ENSG00000133980|ENST00000256362|VRTN	ENSG00000133980|ENST00000256362|VRTN	MULTI-MSMS	A375_MHC_IP_R2	2	583.1981201171875	2	582.758086	1163.50162	-0.72181	-0.00042064	-1.4863	-0.00086615	-2.2081	-0.0012868	582.7571614962812	29.851	0.55633	30.55	30.335	30.892	0.69872					16	10	2	0	0	0	0.60747	1	10397	10397		22.736	4.5899	1	2139100			780	4539	529	536	759	759					-0.07359146187013721
AEEELLRFTG	10	Unmodified	_AEEELLRFTG_					0	0	0			REV__CYP46A1|p.T378A|1|0.2|ENSG00000036530|chr14:99722022-99722022|A/G|missense_variant	REV__CYP46A1|p.T378A|1|0.2|ENSG00000036530|chr14:99722022-99722022|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	583.1982421875	2	582.798403	1163.58225	-0.56202	-0.00032754	0.75954	0.00044266	0.19753	0.00011512	582.7985583397807	30.415	0.90899	30.415	30.15	31.059	0					55	17	5	0	0	0	0.091534	2	9625	9600;9625		65.474	13.844	1	31034000	+		781	15954	530	537	760;761	761					0.007005029181755162
AEEELLRFTG	10	Unmodified	_AEEELLRFTG_					0	0	0			REV__CYP46A1|p.T378A|1|0.2|ENSG00000036530|chr14:99722022-99722022|A/G|missense_variant	REV__CYP46A1|p.T378A|1|0.2|ENSG00000036530|chr14:99722022-99722022|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	389.2678527832031	3	388.868027	1163.58225	-0.13602	-5.2895E-05	0.51593	0.00020063	0.37991	0.00014773	388.86806586132155	30.342	1.2131	30.342	30.099	31.312	0					67	23	4	0	0	0	0.25355	1	9601	9601		31.636	1.2043	1	55428000	+		782	15954	530	537	762	762					0.007005029181755162
AEEELLRFTG	10	Unmodified	_AEEELLRFTG_					0	0	0			REV__CYP46A1|p.T378A|1|0.2|ENSG00000036530|chr14:99722022-99722022|A/G|missense_variant	REV__CYP46A1|p.T378A|1|0.2|ENSG00000036530|chr14:99722022-99722022|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	582.7296142578125	2	582.798403	1163.58225	-0.87006	-0.00050707	0.90007	0.00052456	0.030012	1.7491E-05	582.7986508199351	29.753	0.70664	30.452	30.185	30.892	0.69872					46	13	5	0	0	0	0.1298	1	10353	10353		57.249	11.549	1	34656000	+		783	15954	530	537	763	763					0.007005029181755162
AEEELLRFTG	10	Unmodified	_AEEELLRFTG_					0	0	0			REV__CYP46A1|p.T378A|1|0.2|ENSG00000036530|chr14:99722022-99722022|A/G|missense_variant	REV__CYP46A1|p.T378A|1|0.2|ENSG00000036530|chr14:99722022-99722022|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	389.267822265625	3	388.868027	1163.58225	-0.61784	-0.00024026	0.79617	0.00030961	0.17833	6.9346E-05	388.868166449992	29.863	1.0619	30.561	30.134	31.196	0.69872					70	20	5	0	0	0	0.2347	1	10356	10356		32.898	6.9004	1	74856000	+		784	15954	530	537	764	764					0.007005029181755162
AEEERRERS	9	Unmodified	_AEEERRERS_					0	0	0			REV__ENST00000429204.5_1_1:226925125-226925356:-|nuORF	REV__ENST00000429204.5_1_1:226925125-226925356:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	388.6059875488281	3	387.858414	1160.55341	-0.4233	-0.00016418	0.41436	0.00016071	-0.0089339	-3.4651E-06	388.1928406243339	26.86	0.91763	27.52	26.907	27.825	0.65992					31	17	2	0	0	0	0.74412	1	9124	9124		14.405	0.79051	1	3409500	+		785	24685	531	538	765	765					-0.020442216582523542
AEEESFRKL	9	Unmodified	_AEEESFRKL_					0	0	0		ENSG00000117906|ENST00000394885|RCN2	ENSG00000117906|ENST00000394885|RCN2	ENSG00000117906|ENST00000394885|RCN2	MULTI-SECPEP	A375_MHC_IP_R1	1	555.1846313476562	2	554.785296	1107.55604	-0.86849	-0.00048182	-0.059846	-3.3201E-05	-0.92833	-0.00051503	554.7853412949526	26.667	0.45328	26.667	26.524	26.978	0					14	8	2	0	0	0	0.11887	1	7985	7985		71.708	22.154	1	4417700			786	3518	532	539	766	766					0.006562337467130419
AEEESFRKL	9	Unmodified	_AEEESFRKL_					0	0	0		ENSG00000117906|ENST00000394885|RCN2	ENSG00000117906|ENST00000394885|RCN2	ENSG00000117906|ENST00000394885|RCN2	MULTI-SECPEP	A375_MHC_IP_R2	2	370.5924072265625	3	370.192623	1107.55604	-0.093374	-3.4566E-05	-0.36872	-0.0001365	-0.4621	-0.00017107	370.1926171526953	26.033	0.60926	26.693	26.449	27.058	0.65992					31	11	4	0	0	0	0.16676	1	8761	8761		45.74	19.719	1	17654000			787	3518	532	539	767	767					0.006562337467130419
AEEESFRKL	9	Unmodified	_AEEESFRKL_					0	0	0		ENSG00000117906|ENST00000394885|RCN2	ENSG00000117906|ENST00000394885|RCN2	ENSG00000117906|ENST00000394885|RCN2	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1848754882812	2	554.785296	1107.55604	-1.2009	-0.00066623	-0.18102	-0.00010043	-1.3819	-0.00076665	554.785245284421	26.077	0.35635	26.737	26.551	26.907	0.65992					17	6	3	0	0	0	0.39273	1	8786	8786		43.982	9.0498	1	4768400			788	3518	532	539	768	768					0.006562337467130419
AEEFFMRGY	9	Unmodified	_AEEFFMRGY_					0	0	0		nc|ENSG00000148288|Q8N5D6-3|GBGT1;ENSG00000148288|ENST00000372040|GBGT1	nc|ENSG00000148288|Q8N5D6-3|GBGT1	nc|ENSG00000148288|Q8N5D6-3|GBGT1	MULTI-MSMS	A375_MHC_IP_R2	2	575.1668090820312	2	575.255317	1148.49608	-0.2604	-0.00014979	0.84205	0.0004844	0.58166	0.0003346	575.2558477624386	74.824	0.60763	75.561	75.264	75.872	0.73751					23	11	3	0	0	0	0.32092	1	28455	28455		29.082	9.8246	1	1778400			789	5726	533	540	769	769					-0.0722278018815814
AEEFGNETW	9	Unmodified	_AEEFGNETW_					0	0	0		ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	MULTI-MSMS	A375_MHC_IP_R1	1	542.1248168945312	2	541.724904	1081.43525	-0.63508	-0.00034404	0.0884	4.7889E-05	-0.54668	-0.00029615	541.7250232198365	75.857	0.70454	75.857	75.464	76.168	0					25	13	3	0	0	0	0.012843	1	27601	27601		92.653	68.633	1	3537100			790	8214	534	541	770	770					-0.10220593966755587
AEEFGNETW	9	Unmodified	_AEEFGNETW_					0	0	0		ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	MULTI-SECPEP	A375_MHC_IP_R2	2	542.1243896484375	2	541.724904	1081.43525	-0.87322	-0.00047305	-0.072867	-3.9474E-05	-0.94609	-0.00051252	541.7248701301327	75.16	0.5573	75.897	75.671	76.229	0.73752					18	10	2	0	0	0	0.05021	1	28533	28533		78.728	51.844	1	3754200			791	8214	534	541	771	771					-0.10220593966755587
AEEFHVTLAM	10	Unmodified	_AEEFHVTLAM_					0	0	0			REV__ENSG00000070269|ENST00000261556|TMEM260	REV__ENSG00000070269|ENST00000261556|TMEM260	MULTI-MSMS	A375_MHC_IP_R2	2	383.5865173339844	3	383.186592	1146.53795	-0.44636	-0.00017104	0.5691	0.00021807	0.12274	4.7032E-05	383.18654667175366	22.159	0.45897	22.778	22.592	23.051	0.61932					15	8	2	0	0	0	0.62155	1	7010	7010		12.175	1.8595	1	1775200	+		792	16571	535	542	772	772					-0.029462244996466325
AEEFRAQEI	9	Unmodified	_AEEFRAQEI_					0	0	0		ENSG00000134686|ENST00000683057|PHC2;nc|ENSG00000134686|Q8IXK0-4|PHC2;nc|ENSG00000134686|Q8IXK0|PHC2;ENST00000467894.5_1_1:33790468-33797238:-|nuORF;nc|ENSG00000134686|Q8IXK0-2|PHC2	ENSG00000134686|ENST00000683057|PHC2	ENSG00000134686|ENST00000683057|PHC2	MULTI-MSMS	A375_MHC_IP_R1	1	546.67138671875	2	546.769645	1091.52474	-0.53153	-0.00029062	-0.17816	-9.7412E-05	-0.70969	-0.00038803	546.7700095506303	40.195	0.96526	40.195	39.948	40.913	0					27	18	2	0	0	0	0.6656	1	14082	14082		10.074	1.3285	1	3220400			793	4595	536	543	773	773					-0.017363392873676275
AEEFVNVYY	9	Unmodified	_AEEFVNVYY_					0	0	0		ENSG00000132661|ENST00000254998|NXT1	ENSG00000132661|ENST00000254998|NXT1	ENSG00000132661|ENST00000254998|NXT1	MULTI-MSMS	A375_MHC_IP_R1	1	567.7113647460938	2	567.261122	1132.50769	-0.36552	-0.00020734	0.75563	0.00042864	0.39011	0.0002213	567.2612916824623	96.092	0.65999	96.092	95.767	96.427	0					27	12	3	0	0	0	0.22528	1	35364	35364		36.127	12.979	1	2252100			794	4432	537	544	774	774					-0.05326259893195129
AEEFVNVYY	9	Unmodified	_AEEFVNVYY_					0	0	0		ENSG00000132661|ENST00000254998|NXT1	ENSG00000132661|ENST00000254998|NXT1	ENSG00000132661|ENST00000254998|NXT1	MULTI-SECPEP	A375_MHC_IP_R2	2	567.6605224609375	2	567.261122	1132.50769	-0.19432	-0.00011023	0.4127	0.00023411	0.21838	0.00012388	567.2612075460545	95.467	0.6124	96.217	95.888	96.5	0.75045					25	11	3	0	0	0	0.35487	1	36228	36228		43.858	20.71	1	2013800			795	4432	537	544	775	775					-0.05326259893195129
AEEGFEFWS	9	Unmodified	_AEEGFEFWS_					0	0	0		ENSG00000132879|ENST00000251547|FBXO44;nc|ENSG00000132879|Q9H4M3-2|FBXO44	ENSG00000132879|ENST00000251547|FBXO44	ENSG00000132879|ENST00000251547|FBXO44	MULTI-MSMS	A375_MHC_IP_R2	2	551.6294555664062	2	551.229822	1100.44509	-0.72238	-0.0003982	-0.31476	-0.0001735	-1.0371	-0.0005717	551.2295911495596	104.89	1.1187	105.65	105.16	106.28	0.76308					35	21	2	0	0	0	0.6898	1	39647	39647		7.9102	0.62092	1	2395000			796	4460	538	545	776	776					-0.10111405961379205
AEEGGRSLW	9	Unmodified	_AEEGGRSLW_					0	0	0		ENST00000204517.10_1_16:4322677-4322779:-|nuORF	ENST00000204517.10_1_16:4322677-4322779:-|nuORF	ENST00000204517.10_1_16:4322677-4322779:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	503.14306640625	2	502.743431	1003.47231	-0.33111	-0.00016647	-0.15115	-7.5992E-05	-0.48227	-0.00024246	502.74335422733685	44.035	0.56078	44.035	43.706	44.267	0					17	10	2	0	0	0	0.40377	1	15364	15364		41.956	12.874	1	2837600			797	10078	539	546	777	777					-0.029288776303360464
AEEGGRSLW	9	Unmodified	_AEEGGRSLW_					0	0	0		ENST00000204517.10_1_16:4322677-4322779:-|nuORF	ENST00000204517.10_1_16:4322677-4322779:-|nuORF	ENST00000204517.10_1_16:4322677-4322779:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	503.14251708984375	2	502.743431	1003.47231	-0.51284	-0.00025783	0.075135	3.7773E-05	-0.43771	-0.00022005	502.74336968572925	43.295	0.55743	44.067	43.674	44.231	0.7724					18	10	2	0	0	0	0.50484	1	16139	16139		34.932	13.185	1	1526600			798	10078	539	546	778	778					-0.029288776303360464
AEEGKDYPF	9	Unmodified	_AEEGKDYPF_					0	0	0		ENSG00000178028|ENST00000372289|DMAP1;ENST00000471829.5_1_1:44679383-44683664:+|nuORF;ENST00000475794.5_1_1:44679151-44680992:+|nuORF;ENST00000487922.5_1_1:44679383-44683664:+|nuORF	ENSG00000178028|ENST00000372289|DMAP1	ENSG00000178028|ENST00000372289|DMAP1	MULTI-MSMS	A375_MHC_IP_R1	1	528.2164916992188	2	528.237647	1054.46074	-0.35888	-0.00018957	0.098971	5.228E-05	-0.25991	-0.00013729	528.2376440355173	43.281	0.71181	43.281	42.891	43.603	0					30	13	3	0	0	0	0.04093	2	15053	15008;15053		67.838	25.999	1	7398800			799	8124	540	547	779;780	780					-0.06431119444323485
AEEGKDYPF	9	Unmodified	_AEEGKDYPF_					0	0	0		ENSG00000178028|ENST00000372289|DMAP1;ENST00000471829.5_1_1:44679383-44683664:+|nuORF;ENST00000475794.5_1_1:44679151-44680992:+|nuORF;ENST00000487922.5_1_1:44679383-44683664:+|nuORF	ENSG00000178028|ENST00000372289|DMAP1	ENSG00000178028|ENST00000372289|DMAP1	MULTI-MSMS	A375_MHC_IP_R2	2	528.6373291015625	2	528.237647	1054.46074	-0.45906	-0.00024249	-0.21395	-0.00011301	-0.67301	-0.00035551	528.2374676160921	42.522	0.71171	43.295	42.962	43.674	0.7724					37	13	4	0	0	0	0.073067	2	15792	15754;15792		55.503	28.619	1	6520000			800	8124	540	547	781;782	782					-0.06431119444323485
AEEGSEPHQ	9	Unmodified	_AEEGSEPHQ_					0	0	0			REV__nc|ENSG00000176700|Q9GZW5-2|SCAND2P	REV__nc|ENSG00000176700|Q9GZW5-2|SCAND2P	MULTI-MSMS	A375_MHC_IP_R1	1	492.1637878417969	2	492.206878	982.399203	-0.03124	-1.5377E-05	-0.17292	-8.5115E-05	-0.20416	-0.00010049	492.2067686618703	45.418	0.25111	45.418	45.334	45.585	0					6	4	2	0	0	0	0.6898	1	15946	15946		7.9102	1.187	1	1040100	+		801	23789	541	548	783	783					-0.09270051143607816
AEEHMQLSF	9	Unmodified	_AEEHMQLSF_					0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	MULTI-MSMS	A375_MHC_IP_R2	2	546.2603149414062	2	546.244949	1090.47534	-0.65876	-0.00035985	0.37769	0.00020631	-0.28108	-0.00015354	546.245237981773	93.56	1.8253	94.305	93.449	95.274	0.74473					60	35	2	0	0	0	0.65721	1	35600	35600		10.824	2.9138	1	2353600			802	5661	542	549	784	784					-0.06627370567844082
AEEHPVCYV	9	Unmodified	_AEEHPVCYV_					0	0	0			REV__ENSG00000244486|ENST00000622235|SCARF2	REV__ENSG00000244486|ENST00000622235|SCARF2	MSMS	A375_MHC_IP_R2	2	523.6505737304688	2	523.734217	1045.45388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.632	1	30.33	29.83	30.83	0.69872								0	0	0	0.15486	1	10359	10359		11.64	3.047	1		+		803	22823	543	550	785	785					-0.06702755596552379
AEEISIPIQQL	11	Unmodified	_AEEISIPIQQL_					0	0	0			REV__tr|U7SQS0|U7SQS0_FUSNUIron(III)transportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01769PE=3SV=1	REV__tr|U7SQS0|U7SQS0_FUSNUIron(III)transportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01769PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	413.61871337890625	3	414.230966	1239.67107	-0.52721	-0.00021838	2.1983	0.00091062	1.6711	0.00069223	414.232744411405	33.715	0.50628	34.467	34.196	34.702	0.75225					19	9	4	0	0	0	0.98968	1	11999	11999		13.519	2.6197	1	2997700	+		804	28379	544	551	786	786					0.060819181578835924
AEEKPIEIQW	10	Unmodified	_AEEKPIEIQW_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	MULTI-SECPEP	A375_MHC_IP_R2	2	622.221435546875	2	621.821878	1241.6292	-0.74095	-0.00046074	-0.11522	-7.1647E-05	-0.85617	-0.00053239	621.8215416259883	77.498	0.50864	78.241	77.908	78.416	0.74293					13	9	2	0	0	0	0.67395	1	29458	29458		37.075	20.132	1	1486800			805	3154	545	552	787	787					0.018053624693038728
AEEKRLVRE	9	Unmodified	_AEEKRLVRE_					0	0	0			REV__ERC2|p.K307Nfs*38|1|0.32|ENSG00000187672|chr3:56296178-56296178|A/-|frameshift_variant	REV__ERC2|p.K307Nfs*38|1|0.32|ENSG00000187672|chr3:56296178-56296178|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	377.8804931640625	3	377.21565	1128.62512	0.11791	4.4477E-05	-0.15904	-5.9994E-05	-0.041136	-1.5517E-05	377.2155531898936	32.821	0.5089	33.558	33.367	33.876	0.73692					23	9	4	0	0	0	0.54799	1	11791	11791		17.443	1.704	1	5374300	+		806	22037	546	553	788	788					0.06595317766300468
AEELERQGY	9	Unmodified	_AEELERQGY_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	A375_MHC_IP_R1	1	548.1585693359375	2	547.759278	1093.504	-0.86167	-0.00047199	-0.18945	-0.00010377	-1.0511	-0.00057576	547.7591824147315	26.268	0.50753	26.268	26.118	26.626	0					19	9	3	0	0	0	0.0099737	2	7824	7824;7896		96.367	36.998	1	7488500			807	2857	547	554	789;790	789					-0.03900929667042874
AEELERQGY	9	Unmodified	_AEELERQGY_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	A375_MHC_IP_R2	2	548.15869140625	2	547.759278	1093.504	-1.2402	-0.00067934	0.35305	0.00019339	-0.88717	-0.00048596	547.7592851623026	25.752	0.45847	26.412	26.245	26.703	0.65992					20	8	3	0	0	0	0.0096822	1	8649	8649		110.55	29.877	1	7510200			808	2857	547	554	791	791					-0.03900929667042874
AEELFARKF	9	Unmodified	_AEELFARKF_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	A375_MHC_IP_R1	1	371.2698059082031	3	370.869591	1109.58694	0.62847	0.00023308	-0.13593	-5.0412E-05	0.49254	0.00018267	370.8695412900814	49.571	1.4786	49.571	49.235	50.713	0					77	28	4	0	0	0	0.20059	1	17489	17489		43.982	15.487	1	132980000			809	5230	548	555	792	792					0.03653431851603273
AEELFARKF	9	Unmodified	_AEELFARKF_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	A375_MHC_IP_R1	1	556.2003784179688	2	555.800749	1109.58694	-0.24531	-0.00013635	-0.072413	-4.0247E-05	-0.31773	-0.00017659	555.8006687885345	49.59	1.1218	49.59	49.235	50.357	0					56	21	4	0	0	0	0.0286	1	17502	17502		121.53	81.584	1	45872000			810	5230	548	555	793	793					0.03653431851603273
AEELFARKF	9	Unmodified	_AEELFARKF_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	A375_MHC_IP_R2	2	556.641357421875	2	555.800749	1109.58694	-0.85168	-0.00047337	-0.084359	-4.6887E-05	-0.93604	-0.00052025	555.8006828164715	48.746	1.0653	49.503	49.08	50.145	0.75736					57	20	4	0	0	0	0.25114	1	18205	18205		36.506	18.36	1	36391000			811	5230	548	555	794	794					0.03653431851603273
AEELFARKF	9	Unmodified	_AEELFARKF_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	A375_MHC_IP_R2	2	371.2696838378906	3	370.869591	1109.58694	0.30335	0.0001125	-0.36569	-0.00013562	-0.062339	-2.3119E-05	370.86945999289543	48.752	1.47	49.51	49.03	50.5	0.75737					82	28	5	0	0	0	0.50484	1	18225	18225		22.658	12.508	1	137790000			812	5230	548	555	795	795					0.03653431851603273
AEELLIALGA	10	Unmodified	_AEELLIALGA_					0	0	0		DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant;ENSG00000150990|ENST00000308736|DHX37	DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant	DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	500.6893615722656	2	500.289682	998.564812	-0.56775	-0.00028404	0.48922	0.00024475	-0.078532	-3.9289E-05	500.28982825025696	127.05	0.30309	127.32	127.11	127.41	0.26592					7	5	2	0	0	0	0.72086	1	49753	49753		30.637	1.555	1	12006000			813	741	549	556	796	796					0.06547207383187015
AEELLRIGL	9	Unmodified	_AEELLRIGL_					0	0	0		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-SECPEP	A375_MHC_IP_R1	1	507.13983154296875	2	507.303124	1012.5917	-0.54334	-0.00027564	-0.95897	-0.00048649	-1.5023	-0.00076213	507.302543913039	94.879	0.56026	94.879	94.599	95.16	0					12	10	2	0	0	0	0.34746	1	34886	34886		38.176	11.907	1	1259000			814	6184	550	557	797	797					0.08590315994376851
AEELPHIHAF	10	Unmodified	_AEELPHIHAF_					0	0	0		ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B;ENST00000567436.1_1_16:30204298-30204508:-|nuORF	ENSG00000183336|ENST00000330978|BOLA2	ENSG00000183336|ENST00000330978|BOLA2	MULTI-MSMS	A375_MHC_IP_R1	1	388.93310546875	3	388.532979	1162.57711	0.22438	8.718E-05	-0.065232	-2.5345E-05	0.15915	6.1836E-05	388.53291601656093	59.585	0.6091	59.585	59.245	59.854	0					26	11	3	0	0	0	0.15766	1	21427	21427		51.63	34.581	1	6221900			815	7425	551	558	798	798					0.002322438462442733
AEELPHIHAF	10	Unmodified	_AEELPHIHAF_					0	0	0		ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B;ENST00000567436.1_1_16:30204298-30204508:-|nuORF	ENSG00000183336|ENST00000330978|BOLA2	ENSG00000183336|ENST00000330978|BOLA2	MULTI-SECPEP	A375_MHC_IP_R1	1	582.6953735351562	2	582.29583	1162.57711	-0.19912	-0.00011595	0.092281	5.3735E-05	-0.10684	-6.2212E-05	582.2958385287968	59.688	0.76144	59.688	59.194	59.955	0					29	14	3	0	0	0	0.36543	1	21452	21452		49.933	2.3386	1	6204100			816	7425	551	558	799	799					0.002322438462442733
AEELPHIHAF	10	Unmodified	_AEELPHIHAF_					0	0	0		ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B;ENST00000567436.1_1_16:30204298-30204508:-|nuORF	ENSG00000183336|ENST00000330978|BOLA2	ENSG00000183336|ENST00000330978|BOLA2	MULTI-MSMS	A375_MHC_IP_R2	2	388.9330139160156	3	388.532979	1162.57711	-0.50627	-0.0001967	0.04997	1.9415E-05	-0.4563	-0.00017729	388.5329767975468	58.754	0.55722	59.502	59.185	59.742	0.74714					33	10	4	0	0	0	0.11519	1	22204	22204		57.722	33.932	1	6365100			817	7425	551	558	800	800					0.002322438462442733
AEELPHIHAF	10	Unmodified	_AEELPHIHAF_					0	0	0		ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B;ENST00000567436.1_1_16:30204298-30204508:-|nuORF	ENSG00000183336|ENST00000330978|BOLA2	ENSG00000183336|ENST00000330978|BOLA2	MULTI-SECPEP	A375_MHC_IP_R2	2	582.6954345703125	2	582.29583	1162.57711	-0.73568	-0.00042838	-0.35636	-0.0002075	-1.092	-0.00063589	582.295710680292	58.788	0.76322	59.535	59.082	59.845	0.74714					36	14	4	0	0	0	0.24721	1	22218	22218		58.679	0	1	7020000			818	7425	551	558	801	801					0.002322438462442733
AEELRFRHR	9	Unmodified	_AEELRFRHR_					0	0	0			REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1	REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1	MULTI-MSMS	A375_MHC_IP_R1	1	405.6272888183594	3	405.223139	1212.64759	-0.63518	-0.00025739	3.5749	0.0014486	2.9397	0.0011912	405.2248478841196	32.542	0.60499	32.542	32.282	32.887	0					23	10	3	0	0	0	0.31609	2	10524	10524;10538		29.437	8.566	1	9101800	+		819	18037	552	559	802;803	802					0.049769619545713795
AEELRFRHR	9	Unmodified	_AEELRFRHR_					0	0	0			REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1	REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1	MULTI-SECPEP	A375_MHC_IP_R1	1	405.6272888183594	3	405.223139	1212.64759	-0.63518	-0.00025739	3.5749	0.0014486	2.9397	0.0011912	405.2248478841196	32.542	0.60499	32.542	32.282	32.887	0					23	10	3	0	0	0	0.59927	1	10524	10524		29.437	8.566	1	9101800	+		820	18037	552	559	804	804					0.049769619545713795
AEELRFRHR	9	Unmodified	_AEELRFRHR_					0	0	0			REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1	REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	405.223139	1212.64759	-0.0063042	-2.5546E-06	2.9845	0.0012094	2.9782	0.0012068	405.2241900815997	31.586	0.50859	32.322	32.145	32.654	0.73611	-0.11002	-0.00017401	NaN	29.437	22	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8600200	+		821	18037	552	559							0.049769619545713795
AEELRKIYQ	9	Unmodified	_AEELRKIYQ_					0	0	0			REV__nc|ENSG00000182621|Q9NQ66-2|PLCB1	REV__nc|ENSG00000182621|Q9NQ66-2|PLCB1	MULTI-SECPEP	A375_MHC_IP_R1	1	384.2802734375	3	383.880267	1148.61897	0.27643	0.00010612	-0.0043863	-1.6838E-06	0.27205	0.00010443	383.88015582946895	31.899	0.40927	31.899	31.718	32.127	0					15	7	3	0	0	0	0.63622	1	10281	10281		24.991	0	1	3989900	+		822	21701	553	560	805	805					0.05060799534749094
AEELRRTCSP	10	Unmodified	_AEELRRTCSP_					0	0	0		ENSG00000086696|ENST00000199936|HSD17B2	ENSG00000086696|ENST00000199936|HSD17B2	ENSG00000086696|ENST00000199936|HSD17B2	MULTI-SECPEP	A375_MHC_IP_R1	1	388.62188720703125	3	387.860878	1160.56081	0.0093802	3.6382E-06	1.5527	0.00060224	1.5621	0.00060588	387.8620491067187	27.942	0.9086	27.942	27.229	28.138	0					21	17	2	0	0	0	0.87043	1	8249	8249		4.1166	0	1	4954700			823	1843	554	561	806	806					-0.013052053821866139
AEELVEPAHES	11	Unmodified	_AEELVEPAHES_					0	0	0			REV__ENSG00000178175|ENST00000318442|ZNF366	REV__ENSG00000178175|ENST00000318442|ZNF366	MSMS	A375_MHC_IP_R2	2	605.6961669921875	2	605.78295	1209.55135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.232	1	69.967	69.467	70.467	0.73492								0	0	0	0.15694	1	26236	26236		16.149	3.9084	1		+		824	21490	555	562	807	807					-0.045046951867107055
AEELVGQEL	9	Unmodified	_AEELVGQEL_					0	0	0		ENSG00000133328|ENST00000255695|PLAAT2	ENSG00000133328|ENST00000255695|PLAAT2	ENSG00000133328|ENST00000255695|PLAAT2	MULTI-MSMS	A375_MHC_IP_R2	2	495.6739501953125	2	494.253297	986.492041	-0.72355	-0.00035762	0.077599	3.8354E-05	-0.64595	-0.00031926	494.25313854620873	61.982	0.75948	62.724	62.421	63.18	0.74263					34	14	4	0	0	0	0.32092	1	23507	23507		29.082	9.6426	1	10511000			825	4506	556	563	808	808					-0.0017454641023277873
AEENTRVLY	9	Unmodified	_AEENTRVLY_					0	0	0		nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16;nc|ENSG00000156256|Q9Y5T5-4|USP16;ENST00000485067.1_1_21:30426080-30426505:+|nuORF	nc|ENSG00000156256|Q9Y5T5-3|USP16	nc|ENSG00000156256|Q9Y5T5-3|USP16	MULTI-SECPEP	A375_MHC_IP_R2	2	548.1768188476562	2	547.77747	1093.54039	-0.98534	-0.00053974	3.6424	0.0019952	2.6571	0.0014555	548.2817442199981	34.771	0.50495	35.534	35.223	35.727	0.76338					23	9	3	0	0	0	0.13093	1	12584	12584		51.415	17.228	1	5571700			826	6183	557	564	809	809					-0.0026405277030789875
AEEPCCCDNSP	11	Unmodified	_AEEPCCCDNSP_					0	0	0			REV__nc|ENSG00000145103|Q86SU0-4|ILDR1	REV__nc|ENSG00000145103|Q86SU0-4|ILDR1	MSMS	A375_MHC_IP_R1	1	584.1529541015625	2	584.191199	1166.36784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.616	1	70.616	70.116	71.116	0								0	0	0	0.16249	1	25643	25643		5.7319	1.7875	1		+		827	27273	558	565	810	810					-0.2086845155588435
AEEPLAGRTW	10	Unmodified	_AEEPLAGRTW_					0	0	0		ENST00000529704.5_1_11:67119307-67120167:-|nuORF;ENST00000534515.1_1_11:67119307-67119526:-|nuORF	ENST00000529704.5_1_11:67119307-67120167:-|nuORF	ENST00000529704.5_1_11:67119307-67120167:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	565.6852416992188	2	565.285463	1128.55637	-0.48436	-0.0002738	0.42374	0.00023954	-0.060616	-3.4265E-05	565.2855572259472	52.559	0.76142	52.559	52.287	53.048	0					46	14	4	0	0	0	0.006963	1	18648	18648		132.22	60.298	1	81673000			828	13136	559	566	811	811					-0.002763465334282955
AEEPLAGRTW	10	Unmodified	_AEEPLAGRTW_					0	0	0		ENST00000529704.5_1_11:67119307-67120167:-|nuORF;ENST00000534515.1_1_11:67119307-67119526:-|nuORF	ENST00000529704.5_1_11:67119307-67120167:-|nuORF	ENST00000529704.5_1_11:67119307-67120167:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	565.68505859375	2	565.285463	1128.55637	-0.75324	-0.0004258	0.30702	0.00017355	-0.44623	-0.00025225	565.2855184805643	51.897	0.96419	52.65	52.321	53.285	0.75225					54	18	4	0	0	0	0.075591	1	19484	19484		121.93	50.007	1	73624000			829	13136	559	566	812	812					-0.002763465334282955
AEEPNSTILDL	11	Unmodified	_AEEPNSTILDL_					0	0	0			REV__nc|ENSG00000114805|Q4KWH8-2|PLCH1	REV__nc|ENSG00000114805|Q4KWH8-2|PLCH1	MULTI-MSMS	A375_MHC_IP_R1	1	601.7011108398438	2	601.300975	1200.5874	-0.32533	-0.00019562	0.98463	0.00059206	0.6593	0.00039644	601.3015052003576	46.143	0.55461	46.143	45.89	46.444	0					20	10	3	0	0	0	0.53345	1	16171	16171		28.495	4.4739	1	4776400	+		830	17842	560	567	813	813					-0.004872380098277063
AEEPNSTILDL	11	Unmodified	_AEEPNSTILDL_					0	0	0			REV__nc|ENSG00000114805|Q4KWH8-2|PLCH1	REV__nc|ENSG00000114805|Q4KWH8-2|PLCH1	MULTI-SECPEP	A375_MHC_IP_R1	1	600.7291259765625	2	601.300975	1200.5874	-0.32533	-0.00019562	0.98463	0.00059206	0.6593	0.00039644	601.3015052003576	46.143	0.55461	46.143	45.89	46.444	0					20	10	3	0	0	0	0.98524	1	16112	16112		15.248	1.3424	1	4776400	+		831	17842	560	567	814	814					-0.004872380098277063
AEEPRGGLKI	10	Unmodified	_AEEPRGGLKI_					0	0	0		ENSG00000072364|ENST00000265343|AFF4;AFF4|p.V760Ffs*82|1|0.17|ENSG00000072364|chr5:132896352-132896352|C/-|frameshift_variant;nc|ENSG00000072364|Q9UHB7-2|AFF4;AFF4|p.S884Vfs*42|1|0.25|ENSG00000072364|chr5:132889161-132889161|T/-|frameshift_variant;AFF4|p.K982Sfs*9|1|0.21|ENSG00000072364|chr5:132887565-132887581|CAAGTAATTCTTTAGCT/-|frameshift_variant	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MULTI-MSMS	A375_MHC_IP_R1	1	357.60467529296875	3	357.204862	1068.59276	-0.26492	-9.4631E-05	0.059862	2.1383E-05	-0.20506	-7.3247E-05	357.2049248944064	29.069	0.70964	29.069	28.643	29.353	0					30	13	3	0	0	0	0.51689	1	9032	9032		27.088	3.2873	1	9624600			832	1537	561	568	815	815					0.061205303632732466
AEEQLLKHGW	10	Unmodified	_AEEQLLKHGW_					0	0	0		ENSG00000160818|ENST00000368232|GPATCH4;nc|ENSG00000160818|Q5T3I0-3|GPATCH4;ENST00000473910.5_1_1:156568103-156568838:-|nuORF;ENST00000531900.1_1_1:156568015-156568838:-|nuORF;ENST00000498756.5_1_1:156566177-156568838:-|nuORF;ENST00000506832.6_1_1:156567604-156568838:-|nuORF	ENSG00000160818|ENST00000368232|GPATCH4	ENSG00000160818|ENST00000368232|GPATCH4	MULTI-MSMS	A375_MHC_IP_R1	1	404.6119384765625	3	404.212017	1209.61422	-0.40532	-0.00016384	-0.27851	-0.00011258	-0.68384	-0.00027641	404.21210280353915	46.182	0.80775	46.182	45.738	46.545	0					35	15	3	0	0	0	0.23154	1	16157	16157		46.022	23.247	1	7023900			833	6445	562	569	816	816					0.01779915392012299
AEEQLLKHGW	10	Unmodified	_AEEQLLKHGW_					0	0	0		ENSG00000160818|ENST00000368232|GPATCH4;nc|ENSG00000160818|Q5T3I0-3|GPATCH4;ENST00000473910.5_1_1:156568103-156568838:-|nuORF;ENST00000531900.1_1_1:156568015-156568838:-|nuORF;ENST00000498756.5_1_1:156566177-156568838:-|nuORF;ENST00000506832.6_1_1:156567604-156568838:-|nuORF	ENSG00000160818|ENST00000368232|GPATCH4	ENSG00000160818|ENST00000368232|GPATCH4	MULTI-SECPEP	A375_MHC_IP_R2	2	404.6117858886719	3	404.212017	1209.61422	-0.050803	-2.0535E-05	-0.8333	-0.00033683	-0.8841	-0.00035736	404.2118785498884	45.257	0.55722	46.023	45.746	46.303	0.76519					18	10	2	0	0	0	0.42954	1	16914	16914		35.612	15.986	1	8668600			834	6445	562	569	817	817					0.01779915392012299
AEEQLLKHGW	10	Unmodified	_AEEQLLKHGW_					0	0	0		ENSG00000160818|ENST00000368232|GPATCH4;nc|ENSG00000160818|Q5T3I0-3|GPATCH4;ENST00000473910.5_1_1:156568103-156568838:-|nuORF;ENST00000531900.1_1_1:156568015-156568838:-|nuORF;ENST00000498756.5_1_1:156566177-156568838:-|nuORF;ENST00000506832.6_1_1:156567604-156568838:-|nuORF	ENSG00000160818|ENST00000368232|GPATCH4	ENSG00000160818|ENST00000368232|GPATCH4	MULTI-SECPEP	A375_MHC_IP_R2	2	606.2139892578125	2	605.814387	1209.61422	-0.4752	-0.00028789	-2.4645	-0.001493	-2.9397	-0.0017809	606.3139176990748	45.333	0.45657	46.099	45.846	46.303	0.76518					19	8	3	0	0	0	0.64789	1	16972	16972		38.615	29.869	1	2416200			835	6445	562	569	818	818					0.01779915392012299
AEEQLLKHGW	10	Unmodified	_AEEQLLKHGW_					0	0	0		ENSG00000160818|ENST00000368232|GPATCH4;nc|ENSG00000160818|Q5T3I0-3|GPATCH4;ENST00000473910.5_1_1:156568103-156568838:-|nuORF;ENST00000531900.1_1_1:156568015-156568838:-|nuORF;ENST00000498756.5_1_1:156566177-156568838:-|nuORF;ENST00000506832.6_1_1:156567604-156568838:-|nuORF	ENSG00000160818|ENST00000368232|GPATCH4	ENSG00000160818|ENST00000368232|GPATCH4	MULTI-MATCH	A375_MHC_IP_R1	1		2	605.814387	1209.61422	-0.29962	-0.00018152	-2.8308	-0.0017149	-3.1304	-0.0018964	606.3142871803484	46.155	0.55415	46.155	45.941	46.495	0	0.028139	-0.00020548	NaN	38.615	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2431200			836	6445	562	569							0.01779915392012299
AEERERESR	9	Unmodified	_AEERERESR_					0	0	0			REV__ENSG00000181215|ENST00000531445|C4orf50	REV__ENSG00000181215|ENST00000531445|C4orf50	MULTI-SECPEP	A375_MHC_IP_R2	2	387.5997314453125	3	387.858414	1160.55341	-0.58868	-0.00022833	0.57573	0.0002233	-0.012958	-5.0257E-06	387.85864400046046	25.579	1.2217	26.239	25.786	27.008	0.65992					41	23	2	0	0	0	0.76452	1	8492	8492		5.4027	0	1	2921200	+		837	21642	563	570	819	819					-0.020442216582523542
AEERGCKESVF	11	Unmodified	_AEERGCKESVF_					0	0	0			REV__ZBED4|p.S240F|1|0.24|ENSG00000100426|chr22:49884381-49884381|C/T|missense_variant	REV__ZBED4|p.S240F|1|0.24|ENSG00000100426|chr22:49884381-49884381|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	418.2783203125	3	418.864289	1253.57104	-0.57119	-0.00023925	-2.8978	-0.0012138	-3.469	-0.001453	419.1982179606101	33.621	0.20283	34.373	34.247	34.45	0.75225					6	3	2	0	0	0	0.99332	1	12065	12065		7.0371	2.6309	1	710620	+		838	29010	564	571	820	820					-0.04560642447609098
AEERLKKVF	9	Unmodified	_AEERLKKVF_					0	0	0			REV__ENST00000370654.5_1_1:84961112-84961604:+|nuORF	REV__ENST00000370654.5_1_1:84961112-84961604:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	560.7291259765625	2	560.329673	1118.64479	-1.0042	-0.00056266	-0.8762	-0.00049096	-1.8804	-0.0010536	560.8304609401184	34.198	0.45726	34.951	34.651	35.108	0.75225					13	8	2	0	0	0	0.67483	1	12369	12369		14.838	0	1	4612800	+		839	24035	565	572	821	821					0.09021693777026485
AEERRLLRT	9	Unmodified	_AEERRLLRT_					0	0	0		ENST00000523741.5_1_8:126104080-126114361:+|nuORF	ENST00000523741.5_1_8:126104080-126114361:+|nuORF	ENST00000523741.5_1_8:126104080-126114361:+|nuORF	MSMS	A375_MHC_IP_R1	1	381.9558410644531	3	381.891278	1142.652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.016	1	31.016	30.516	31.516	0								0	0	0	0.15486	1	9911	9911		4.5289	0.12271	1				840	13049	566	573	822	822					0.08638426377456199
AEERTIEY	8	Unmodified	_AEERTIEY_					0	0	0			REV__tr|U7STV9|U7STV9_FUSNUBiotinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioBPE=3SV=1	REV__tr|U7STV9|U7STV9_FUSNUBiotinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioBPE=3SV=1	MSMS	A375_MHC_IP_R2	2	505.6402587890625	2	505.743096	1009.47164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.536	1	45.305	44.805	45.805	0.7691								0	0	0	0.16876	1	16624	16624		21.747	0.87544	1		+		841	28512	567	574	823	823					-0.03271717070037994
AEERVLDQEN	10	Unmodified	_AEERVLDQEN_					0	0	0			REV__nc|ENSG00000008294|O60271-9|SPAG9	REV__nc|ENSG00000008294|O60271-9|SPAG9	MSMS	A375_MHC_IP_R2	2	601.701171875	2	601.786024	1201.55749	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.381	1	46.146	45.646	46.646	0.76519								0	0	0	0.15353	1	16961	16961		9.3831	0	1		+		842	16170	568	575	824	824					-0.03522176955175382
AEESDLSRQY	10	Unmodified	_AEESDLSRQY_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;GTF3C1|p.S767Vfs*7|1|0.47|ENSG00000077235|chr16:27497688-27497688|T/-|frameshift_variant	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	A375_MHC_IP_R1	1	599.6724243164062	2	599.272749	1196.53095	-0.57281	-0.00034327	0.42155	0.00025262	-0.15126	-9.0646E-05	599.2729204767691	27.8	0.55431	27.8	27.584	28.138	0					35	10	5	0	0	0	1.0161E-07	1	8469	8469		208.35	141.9	1	17685000			843	1649	569	576	825	825					-0.05945865846524612
AEESDLSRQY	10	Unmodified	_AEESDLSRQY_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;GTF3C1|p.S767Vfs*7|1|0.47|ENSG00000077235|chr16:27497688-27497688|T/-|frameshift_variant	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	A375_MHC_IP_R2	2	599.6727905273438	2	599.272749	1196.53095	-0.48122	-0.00028838	0.38243	0.00022918	-0.098792	-5.9203E-05	599.2729089195648	27.244	0.45872	27.922	27.741	28.2	0.67857					30	8	5	0	0	0	2.8606E-06	1	9287	9287		195.04	125.93	1	18861000			844	1649	569	576	826	826					-0.05945865846524612
AEESGRLW	8	Unmodified	_AEESGRLW_					0	0	0		ENSG00000113621|ENST00000358387|TXNDC15;nc|ENSG00000113621|Q96J42-2|TXNDC15	ENSG00000113621|ENST00000358387|TXNDC15	ENSG00000113621|ENST00000358387|TXNDC15	MULTI-MSMS	A375_MHC_IP_R1	1	474.6327209472656	2	474.232699	946.450845	-0.49374	-0.00023415	0.53472	0.00025358	0.040987	1.9438E-05	474.2328865332	43.918	0.61084	43.918	43.502	44.113	0					16	11	2	0	0	0	0.57209	1	15320	15320		46.021	9.9768	1	1838400			845	3169	570	577	827	827					-0.024522626590623986
AEESLFRVF	9	Unmodified	_AEESLFRVF_					0	0	0		nc|ENSG00000108799|Q92800-2|EZH1;ENSG00000108799|ENST00000428826|EZH1;nc|ENSG00000108799|Q92800-3|EZH1;nc|ENSG00000108799|Q92800-5|EZH1;ENST00000586103.5_1_17:40855746-40880959:-|nuORF;nc|ENSG00000108799|Q92800-4|EZH1;ENST00000591330.5_1_17:40855746-40879722:-|nuORF;ENST00000585912.5_1_17:40855746-40880959:-|nuORF;ENST00000585550.5_1_17:40855746-40872302:-|nuORF	nc|ENSG00000108799|Q92800-2|EZH1	nc|ENSG00000108799|Q92800-2|EZH1	MULTI-MSMS	A375_MHC_IP_R2	2	549.7367553710938	2	549.284931	1096.55531	-0.6564	-0.00036055	0.44429	0.00024404	-0.21211	-0.00011651	549.2851468107267	101.09	0.46219	101.85	101.6	102.06	0.76428					13	8	2	0	0	0	0.4875	1	38279	38279		20.415	2.2682	1	1092200			846	2839	571	578	828	828					0.010894390976773138
AEESPWQHR	9	Unmodified	_AEESPWQHR_					0	0	0			REV__nc|ENSG00000157510|Q8TED9-3|AFAP1L1	REV__nc|ENSG00000157510|Q8TED9-3|AFAP1L1	MULTI-SECPEP	A375_MHC_IP_R2	2	380.5927429199219	3	380.512467	1138.51557	-0.56697	-0.00021574	0.25379	9.657E-05	-0.31318	-0.00011917	380.51253006017447	37.192	0.40466	37.962	37.767	38.171	0.7709					13	7	2	0	0	0	0.7911	1	13681	13681		4.5289	4.5289	1	1497300	+		847	20033	572	579	829	829					-0.048146878530587855
AEESPWQHR	9	Unmodified	_AEESPWQHR_					0	0	0			REV__nc|ENSG00000157510|Q8TED9-3|AFAP1L1	REV__nc|ENSG00000157510|Q8TED9-3|AFAP1L1	MULTI-MATCH	A375_MHC_IP_R1	1		3	380.512467	1138.51557	0.075433	2.8703E-05	0.32811	0.00012485	0.40354	0.00015355	380.51260082270966	38.071	0.30597	38.071	37.862	38.168	0	0.054263	4.3621E-05	NaN	4.5289	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1549600	+		848	20033	572	579							-0.048146878530587855
AEESYAERGF	10	Unmodified	_AEESYAERGF_					0	0	0			REV__ACLY|p.P248S|1|0.18|ENSG00000131473|chr17:41907447-41907447|G/A|missense_variant	REV__ACLY|p.P248S|1|0.18|ENSG00000131473|chr17:41907447-41907447|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	580.1578369140625	2	579.756735	1157.49892	-0.00015466	-8.9665E-08	1.0195	0.00059108	1.0194	0.00059099	579.7571180403969	94.978	0.40648	95.728	95.583	95.99	0.75045					11	7	2	0	0	0	0.92832	1	36106	36106		5.7319	5.7319	1	1345700	+		849	15294	573	580	830	830					-0.07353233529670433
AEESYAERGF	10	Unmodified	_AEESYAERGF_					0	0	0			REV__ACLY|p.P248S|1|0.18|ENSG00000131473|chr17:41907447-41907447|G/A|missense_variant	REV__ACLY|p.P248S|1|0.18|ENSG00000131473|chr17:41907447-41907447|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	579.756735	1157.49892	-0.24236	-0.00014051	0.73321	0.00042508	0.49085	0.00028457	579.7571561863429	95.742	0.50457	95.742	95.565	96.069	0	0.0067791	-0.00016515	NaN	5.7319	14	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2019900	+		850	15294	573	580							-0.07353233529670433
AEESYIPATLL	11	Unmodified	_AEESYIPATLL_					0	0	0			REV__ENSG00000198915|ENST00000395810|RASGEF1A	REV__ENSG00000198915|ENST00000395810|RASGEF1A	MULTI-SECPEP	A375_MHC_IP_R2	2	403.6271057128906	3	402.879933	1205.61797	-0.049148	-1.9801E-05	1.4312	0.00057661	1.3821	0.00055681	403.21500969250116	32.741	0.76353	33.478	33.061	33.825	0.73692					17	14	2	0	0	0	0.99778	1	11815	11815		3.8459	0	1	2040500	+		851	22446	574	581	831	831					0.023385403751944978
AEETQRKDSF	10	Unmodified	_AEETQRKDSF_					0	0	0			REV__ENSG00000111817|ENST00000644252|DSE	REV__ENSG00000111817|ENST00000644252|DSE	MULTI-MSMS	A375_MHC_IP_R1	1	606.8273315429688	2	605.788566	1209.56258	-0.37361	-0.00022633	0.68337	0.00041397	0.30976	0.00018765	605.7909515246522	79.957	0.30679	79.957	79.728	80.034	0					10	5	3	0	0	0	0.70329	1	29169	29169		10.824	1.4408	1	1136200	+		852	17697	575	582	832	832					-0.033818730925759155
AEEVARLW	8	Unmodified	_AEEVARLW_					0	0	0		nc|ENSG00000158711|P28324-2|ELK4;ENSG00000158711|ENST00000357992|ELK4;ELK4|p.R48C|1|0.61|ENSG00000158711|chr1:205623741-205623741|G/A|missense_variant;nc|ENSG00000126767|P19419-2|ELK1;ENSG00000126767|ENST00000376983|ELK1	nc|ENSG00000158711|P28324-2|ELK4	nc|ENSG00000158711|P28324-2|ELK4	MULTI-MSMS	A375_MHC_IP_R1	1	487.65777587890625	2	487.258717	972.50288	-0.48939	-0.00023846	-1.0257	-0.00049979	-1.5151	-0.00073825	487.2581107621681	66.705	0.45885	66.705	66.428	66.887	0					13	8	2	0	0	0	0.62444	1	24219	24219		43.858	5.8843	1	1152900			853	6325	576	583	833	833					0.015529007547002038
AEEVLRLRPR	10	Unmodified	_AEEVLRLRPR_					0	0	0			REV__ENST00000530378.5_1_11:16757956-16760124:-|nuORF	REV__ENST00000530378.5_1_11:16757956-16760124:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	620.2696533203125	2	619.870028	1237.7255	-0.53473	-0.00033146	-0.70774	-0.00043871	-1.2425	-0.00077017	619.8694260458971	136.54	0.71906	136.65	136.3	137.02	0.11134					17	13	2	0	0	0	0.94862	1	53687	53687		0	0	1	1099500	+		854	25837	577	584	834	834					0.11614974819894996
AEEWYKSKF	9	Unmodified	_AEEWYKSKF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF;ENSG00000148798|ENST00000369849|INA	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R1	1	396.92919921875	3	396.529235	1186.56587	0.024668	9.7817E-06	0.02404	9.5324E-06	0.048708	1.9314E-05	396.5292133760892	43.417	0.6115	43.417	43.095	43.706	0					35	11	4	0	0	0	0.063448	1	15061	15061		59.052	29.212	1	17854000			855	1093	578	585	835	835					-0.019945782479226182
AEEWYKSKF	9	Unmodified	_AEEWYKSKF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF;ENSG00000148798|ENST00000369849|INA	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	A375_MHC_IP_R1	1	594.690185546875	2	594.290214	1186.56587	-0.25789	-0.00015326	-0.16319	-9.698E-05	-0.42107	-0.00025024	594.2900408727737	43.409	0.50862	43.409	43.095	43.603	0					19	9	3	0	0	0	0.064556	1	15096	15096		85.764	61.744	1	5073500			856	1093	578	585	836	836					-0.019945782479226182
AEEWYKSKF	9	Unmodified	_AEEWYKSKF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF;ENSG00000148798|ENST00000369849|INA	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	A375_MHC_IP_R2	2	396.9290771484375	3	396.529235	1186.56587	-0.045755	-1.8143E-05	-0.058482	-2.319E-05	-0.10424	-4.1333E-05	396.52915223882314	42.676	0.60826	43.448	43.167	43.775	0.7724					35	11	4	0	0	0	0.061442	1	15844	15844		67.081	37.24	1	31983000			857	1093	578	585	837	837					-0.019945782479226182
AEEWYKSKF	9	Unmodified	_AEEWYKSKF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF;ENSG00000148798|ENST00000369849|INA	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	A375_MHC_IP_R2	2	594.6893310546875	2	594.290214	1186.56587	-0.49695	-0.00029533	-0.2985	-0.00017739	-0.79544	-0.00047272	594.2898472761776	42.667	0.45669	43.439	43.167	43.623	0.7724					20	8	3	0	0	0	0.054506	1	15882	15882		91.085	58.299	1	5816100			858	1093	578	585	838	838					-0.019945782479226182
AEEYLDKYL	9	Unmodified	_AEEYLDKYL_					0	0	0			REV__ENSG00000164309|ENST00000446378|CMYA5	REV__ENSG00000164309|ENST00000446378|CMYA5	MULTI-MSMS	A375_MHC_IP_R2	2	381.98382568359375	3	381.857128	1142.54956	-0.029257	-1.1172E-05	-0.83019	-0.00031701	-0.85945	-0.00032819	382.1920843735525	27.547	0.30256	28.225	28.149	28.452	0.67857					7	5	2	0	0	0	0.60982	1	9448	9448		14.405	0	1	1460900	+		859	20481	579	586	839	839					-0.016017042046541974
AEFAQHRRL	9	Unmodified	_AEFAQHRRL_					0	0	0		ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	MULTI-SECPEP	A375_MHC_IP_R1	1	376.6399841308594	3	376.540468	1126.59957	0.2422	9.1198E-05	1.5335	0.00057744	1.7757	0.00066864	376.5408441032161	32.116	0.46187	32.116	31.921	32.383	0					15	7	3	0	0	0	0.71541	1	10283	10283		4.5289	0	1	5190400			860	7039	580	587	840	840					0.041338880344937934
AEFAQVTNW	9	Unmodified	_AEFAQVTNW_					0	0	0		ENSG00000094914|ENST00000209873|AAAS;ENST00000546393.6_1_12:53708449-53708909:-|nuORF	ENSG00000094914|ENST00000209873|AAAS	ENSG00000094914|ENST00000209873|AAAS	MULTI-SECPEP	A375_MHC_IP_R1	1	533.6534423828125	2	533.253631	1064.49271	-0.58556	-0.00031225	-0.071178	-3.7956E-05	-0.65674	-0.00035021	533.2539073736373	93.618	0.56081	93.618	93.279	93.84	0					25	10	3	0	0	0	0.31606	1	34411	34411		47.749	13.646	1	2472800			861	2028	581	588	841	841					-0.03695706970552237
AEFAQVTNW	9	Unmodified	_AEFAQVTNW_					0	0	0		ENSG00000094914|ENST00000209873|AAAS;ENST00000546393.6_1_12:53708449-53708909:-|nuORF	ENSG00000094914|ENST00000209873|AAAS	ENSG00000094914|ENST00000209873|AAAS	MULTI-MSMS	A375_MHC_IP_R2	2	533.654296875	2	533.253631	1064.49271	-0.65326	-0.00034836	0.71295	0.00038019	0.05969	3.183E-05	533.2540603199641	92.946	0.609	93.685	93.392	94.001	0.73902					18	11	2	0	0	0	0.0099737	1	35359	35359		96.367	42.534	1	1959200			862	2028	581	588	842	842					-0.03695706970552237
AEFDAVVGY	9	Unmodified	_AEFDAVVGY_					0	0	0		nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	MULTI-SECPEP	A375_MHC_IP_R1	1	486.12945556640625	2	485.729458	969.444362	-0.37531	-0.0001823	0.17396	8.4497E-05	-0.20135	-9.7803E-05	485.72958675830324	90.025	0.50579	90.025	89.83	90.336	0					21	9	3	0	0	0	0.52144	1	33100	33100		30.225	1.738	1	1168700			863	2403	582	589	843	843					-0.04158200610424956
AEFDAVVGY	9	Unmodified	_AEFDAVVGY_					0	0	0		nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	MULTI-MSMS	A375_MHC_IP_R2	2	486.69757080078125	2	485.729458	969.444362	-0.51711	-0.00025117	0.15597	7.5758E-05	-0.36114	-0.00017542	485.7294761340426	89.473	0.86246	90.205	89.836	90.699	0.7318					22	16	3	0	0	0	0.55818	1	34018	34018		16.942	5.8278	1	2390800			864	2403	582	589	844	844					-0.04158200610424956
AEFEEPRVI	9	Unmodified	_AEFEEPRVI_					0	0	0		ENSG00000163956|ENST00000650182|LRPAP1;ENST00000515119.5_1_4:3517776-3534065:-|nuORF;ENST00000296325.9_1_4:3514703-3533784:-|nuORF	ENSG00000163956|ENST00000650182|LRPAP1	ENSG00000163956|ENST00000650182|LRPAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	545.681640625	2	545.282389	1088.55022	-1.0987	-0.00059911	-0.36964	-0.00020156	-1.4683	-0.00080066	545.2822160469271	61.803	0.60434	62.546	62.27	62.874	0.74263					19	11	2	0	0	0	0.074405	1	23426	23426		70.332	24.632	1	4373200			865	6753	583	590	845	845					0.009491352350551097
AEFEKIQKL	9	Unmodified	_AEFEKIQKL_					0	0	0		ENSG00000138617|ENST00000649807|PARP16;nc|ENSG00000138617|Q8N5Y8-3|PARP16	ENSG00000138617|ENST00000649807|PARP16	ENSG00000138617|ENST00000649807|PARP16	MULTI-MSMS	A375_MHC_IP_R1	1	369.5859375	3	369.213246	1104.61791	0.63074	0.00023288	-0.28926	-0.0001068	0.34149	0.00012608	369.213181396541	38.835	0.81416	38.835	38.577	39.391	0					48	15	5	0	0	0	0.030891	2	13232	13179;13232		74.2	22.784	1	92101000			866	5008	584	591	846;847	847					0.06978585165848017
AEFEKIQKL	9	Unmodified	_AEFEKIQKL_					0	0	0		ENSG00000138617|ENST00000649807|PARP16;nc|ENSG00000138617|Q8N5Y8-3|PARP16	ENSG00000138617|ENST00000649807|PARP16	ENSG00000138617|ENST00000649807|PARP16	MULTI-SECPEP	A375_MHC_IP_R1	1	553.7161865234375	2	553.316232	1104.61791	-0.20852	-0.00011538	-1.335	-0.00073866	-1.5435	-0.00085404	553.3161061568105	38.832	0.71145	38.832	38.577	39.289	0					44	13	4	0	0	0	0.0037789	1	13178	13178		168.54	65.184	1	34886000			867	5008	584	591	848	848					0.06978585165848017
AEFEKIQKL	9	Unmodified	_AEFEKIQKL_					0	0	0		ENSG00000138617|ENST00000649807|PARP16;nc|ENSG00000138617|Q8N5Y8-3|PARP16	ENSG00000138617|ENST00000649807|PARP16	ENSG00000138617|ENST00000649807|PARP16	MULTI-MSMS	A375_MHC_IP_R2	2	369.61309814453125	3	369.213246	1104.61791	0.062384	2.3033E-05	-0.13991	-5.1656E-05	-0.077523	-2.8623E-05	369.2132313281004	37.938	1.0711	38.713	38.33	39.401	0.77451					46	20	3	0	0	0	0.084766	2	13902	13902;13984		53.404	9.4222	1	88839000			868	5008	584	591	849;850	849					0.06978585165848017
AEFEKIQKL	9	Unmodified	_AEFEKIQKL_					0	0	0		ENSG00000138617|ENST00000649807|PARP16;nc|ENSG00000138617|Q8N5Y8-3|PARP16	ENSG00000138617|ENST00000649807|PARP16	ENSG00000138617|ENST00000649807|PARP16	MULTI-SECPEP	A375_MHC_IP_R2	2	553.715576171875	2	553.316232	1104.61791	-0.99755	-0.00055196	-1.4146	-0.00078269	-2.4121	-0.0013347	553.3163825154788	37.943	0.61561	38.718	38.483	39.098	0.77451					44	11	5	0	0	0	0.0037789	1	13906	13906		181.69	67.042	1	28213000			869	5008	584	591	851	851					0.06978585165848017
AEFELPKTM	9	Unmodified	_AEFELPKTM_					0	0	0		ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	533.66748046875	2	533.267893	1064.52123	-0.64896	-0.00034607	0.91179	0.00048623	0.26283	0.00014016	533.2683916071902	74.203	1.267	74.203	73.437	74.704	0					33	24	2	0	0	0	0.37663	1	27017	27017		36.506	13.358	1	7231400			870	1926	585	592	852	852					-0.00844725385604761
AEFELPKTM	9	Unmodified	_AEFELPKTM_					0	0	0		ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	533.6676025390625	2	533.267893	1064.52123	-0.67954	-0.00036238	0.44504	0.00023733	-0.2345	-0.00012505	533.2683209284568	73.478	0.76614	74.213	73.836	74.602	0.73541					22	14	2	0	0	0	0.14554	1	27874	27874		57.249	35.712	1	9313100			871	1926	585	592	853	853					-0.00844725385604761
AEFELPKTM	9	Oxidation (M)	_AEFELPKTM(Oxidation (M))_		AEFELPKTM(1)		AEFELPKTM(62)	0	0	1		ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	542.0217895507812	2	541.26535	1080.51615	-0.53747	-0.00029092	-0.23475	-0.00012706	-0.77222	-0.00041798	541.2651291107659	55.94	0.91437	55.94	55.533	56.447	0					41	17	3	0	0	0	0.074405	1	19971	19971		61.602	27.2	1	10877000			872	1926	585	593	854	854		70			-0.020890292482363293
AEFELPKTM	9	Oxidation (M)	_AEFELPKTM(Oxidation (M))_		AEFELPKTM(1)		AEFELPKTM(80)	0	0	1		ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	MULTI-MSMS	A375_MHC_IP_R2	2	541.664794921875	2	541.26535	1080.51615	-0.94528	-0.00051165	-0.38339	-0.00020751	-1.3287	-0.00071916	541.2650690405262	55.237	1.1188	55.988	55.575	56.694	0.75075					55	21	4	0	0	0	0.024574	2	20812	20812;20903		79.596	34.206	1	9611800			873	1926	585	593	855;856	855		70			-0.020890292482363293
AEFEQGHQF	9	Unmodified	_AEFEQGHQF_					0	0	0		ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	MULTI-MSMS	A375_MHC_IP_R1	1	547.1401977539062	2	546.740888	1091.46722	-0.38837	-0.00021234	-0.18223	-9.9633E-05	-0.5706	-0.00031197	546.740666180035	35.891	0.40711	35.891	35.676	36.084	0					19	7	3	0	0	0	0.02114	1	11968	11968		82.529	60.992	1	5777400			874	9738	586	594	857	857					-0.07485181492961601
AEFEQGHQF	9	Unmodified	_AEFEQGHQF_					0	0	0		ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	MULTI-MSMS	A375_MHC_IP_R2	2	547.1401977539062	2	546.740888	1091.46722	-1.0223	-0.00055893	0.66249	0.00036221	-0.35979	-0.00019671	546.7411388231367	35.179	0.4048	35.942	35.727	36.132	0.76338					19	7	4	0	0	0	0.0092511	1	12740	12740		103.42	74.338	1	7043500			875	9738	586	594	858	858					-0.07485181492961601
AEFEVHEVY	9	Unmodified	_AEFEVHEVY_					0	0	0		ENSG00000170515|ENST00000303305|PA2G4;nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENST00000414718.1_1_20:12360810-12361446:+|nuORF;ENST00000552528.1_1_12:56503657-56504297:+|nuORF;ENST00000438325.2_1_9:92064608-92065217:+|nuORF	ENSG00000170515|ENST00000303305|PA2G4	ENSG00000170515|ENST00000303305|PA2G4	MULTI-MSMS	A375_MHC_IP_R1	1	562.158203125	2	561.758746	1121.50294	-0.48914	-0.00027478	0.091133	5.1195E-05	-0.39801	-0.00022358	561.7587093444183	58.049	0.81163	58.049	57.72	58.531	0					45	15	4	0	0	0	0.0060803	1	20806	20806		164.52	109.74	1	41373000			876	7515	587	595	859	859					-0.05295144035949306
AEFEVHEVY	9	Unmodified	_AEFEVHEVY_					0	0	0		ENSG00000170515|ENST00000303305|PA2G4;nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENST00000414718.1_1_20:12360810-12361446:+|nuORF;ENST00000552528.1_1_12:56503657-56504297:+|nuORF;ENST00000438325.2_1_9:92064608-92065217:+|nuORF	ENSG00000170515|ENST00000303305|PA2G4	ENSG00000170515|ENST00000303305|PA2G4	MULTI-MSMS	A375_MHC_IP_R1	1	562.2052001953125	2	561.758746	1121.50294	-0.40122	-0.00022539	0.14687	8.2504E-05	-0.25435	-0.00014288	561.758871346847	70.659	0.50951	70.659	70.341	70.85	0					14	9	2	0	0	0	0.58047	1	25582	25582		15.847	1.0089	1	2122500			877	7515	587	595	860	860					-0.05295144035949306
AEFEVHEVY	9	Unmodified	_AEFEVHEVY_					0	0	0		ENSG00000170515|ENST00000303305|PA2G4;nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENST00000414718.1_1_20:12360810-12361446:+|nuORF;ENST00000552528.1_1_12:56503657-56504297:+|nuORF;ENST00000438325.2_1_9:92064608-92065217:+|nuORF	ENSG00000170515|ENST00000303305|PA2G4	ENSG00000170515|ENST00000303305|PA2G4	MULTI-SECPEP	A375_MHC_IP_R2	2	562.1585693359375	2	561.758746	1121.50294	-0.94561	-0.0005312	0.048732	2.7376E-05	-0.89688	-0.00050383	561.7587528410322	57.346	0.91698	58.095	57.661	58.578	0.74894					50	17	4	0	0	0	0.006701	1	21645	21645		164.52	109.74	1	43678000			878	7515	587	595	861	861					-0.05295144035949306
AEFEVHEVY	9	Unmodified	_AEFEVHEVY_					0	0	0		ENSG00000170515|ENST00000303305|PA2G4;nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENST00000414718.1_1_20:12360810-12361446:+|nuORF;ENST00000552528.1_1_12:56503657-56504297:+|nuORF;ENST00000438325.2_1_9:92064608-92065217:+|nuORF	ENSG00000170515|ENST00000303305|PA2G4	ENSG00000170515|ENST00000303305|PA2G4	MULTI-MATCH	A375_MHC_IP_R2	2		2	561.758746	1121.50294	-0.52394	-0.00029433	-0.0034764	-1.9529E-06	-0.52741	-0.00029628	561.7586996791275	70.013	0.45689	70.747	70.591	71.048	0.73421	0.044477	-9.1507E-05	NaN	15.847	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2295600			879	7515	587	595							-0.05295144035949306
AEFEVPKLVQY	11	Unmodified	_AEFEVPKLVQY_					0	0	0		nc|ENSG00000174989|Q8N3Y1-2|FBXW8;ENSG00000174989|ENST00000652555|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	MULTI-SECPEP	A375_MHC_IP_R1	1	662.2530517578125	2	661.853178	1321.6918	-0.44582	-0.00029507	0.64949	0.00042986	0.20367	0.0001348	662.356005193535	97.59	0.456	97.59	97.338	97.794	0					13	8	2	0	0	0	0.44636	1	35899	35899		53.317	35.17	1	1566300			880	7920	588	596	862	862					0.043825085375146955
AEFEVVRTI	9	Unmodified	_AEFEVVRTI_					0	0	0		ENSG00000115073|ENST00000289228|ACTR1B	ENSG00000115073|ENST00000289228|ACTR1B	ENSG00000115073|ENST00000289228|ACTR1B	MULTI-SECPEP	A375_MHC_IP_R1	1	532.6923217773438	2	532.292756	1062.57096	-0.55361	-0.00029468	0.35623	0.00018962	-0.19737	-0.00010506	532.2929185444294	70.825	0.71667	70.825	70.494	71.211	0					26	11	3	0	0	0	0.11849	1	25708	25708		49.742	5.7601	1	8576800			881	3267	589	597	863	863					0.04217725614716983
AEFEVVRTI	9	Unmodified	_AEFEVVRTI_					0	0	0		ENSG00000115073|ENST00000289228|ACTR1B	ENSG00000115073|ENST00000289228|ACTR1B	ENSG00000115073|ENST00000289228|ACTR1B	MULTI-SECPEP	A375_MHC_IP_R2	2	532.6927490234375	2	532.292756	1062.57096	-0.63728	-0.00033922	-1.2868	-0.00068496	-1.9241	-0.0010242	532.2926966698201	70.061	0.71276	70.796	70.386	71.099	0.7342					42	13	5	0	0	0	0.11849	1	26550	26550		57.108	5.6923	1	9785700			882	3267	589	597	864	864					0.04217725614716983
AEFGAAGVNRL	11	Unmodified	_AEFGAAGVNRL_					0	0	0		ENSG00000136444|ENST00000258955|RSAD1;ENST00000443328.2_1_17:48556221-48557532:+|nuORF	ENSG00000136444|ENST00000258955|RSAD1	ENSG00000136444|ENST00000258955|RSAD1	MULTI-SECPEP	A375_MHC_IP_R1	1	552.1561279296875	2	552.793455	1103.57236	-0.74754	-0.00041324	0.83977	0.00046422	0.09223	5.0984E-05	552.7939605606693	52.971	0.35443	52.971	52.744	53.099	0					9	6	2	0	0	0	0.85086	1	18877	18877		28.495	9.2375	1	2301500			883	4788	590	598	865	865					0.024713597034633494
AEFGEPLPKRL	11	Unmodified	_AEFGEPLPKRL_					0	0	0		ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	MULTI-MSMS	A375_MHC_IP_R1	1	419.97161865234375	3	419.571434	1255.69247	0.24014	0.00010076	-0.078214	-3.2816E-05	0.16193	6.7941E-05	419.571390537657	51.945	0.45965	51.945	51.676	52.136	0					19	8	3	0	0	0	0.67398	1	18455	18455		17.572	10.535	1	4533100			884	7660	591	599	866	866					0.07485347977240053
AEFGEPLPKRL	11	Unmodified	_AEFGEPLPKRL_					0	0	0		ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	MULTI-MSMS	A375_MHC_IP_R2	2	419.9713439941406	3	419.571434	1255.69247	-0.20873	-8.7578E-05	-0.37853	-0.00015882	-0.58726	-0.0002464	419.5712207283313	51.134	0.40528	51.888	51.715	52.12	0.75406					12	7	2	0	0	0	0.36066	1	19252	19252		42.068	28.453	1	1752600			885	7660	591	599	867	867					0.07485347977240053
AEFGGGTRGF	10	Unmodified	_AEFGGGTRGF_					0	0	0		ENSG00000074855|ENST00000159087|ANO8;nc|ENSG00000074855|Q9HCE9-2|ANO8	ENSG00000074855|ENST00000159087|ANO8	ENSG00000074855|ENST00000159087|ANO8	MULTI-SECPEP	A375_MHC_IP_R1	1	500.1379699707031	2	499.738148	997.461744	-0.68194	-0.00034079	0.32015	0.00015999	-0.36179	-0.0001808	499.73827679216095	41.625	0.66508	41.625	41.317	41.982	0					25	12	3	0	0	0	0.06997	1	14397	14397		93.938	45.592	1	7891900			886	1595	592	600	868	868					-0.0370886028475752
AEFGGGTRGF	10	Unmodified	_AEFGGGTRGF_					0	0	0		ENSG00000074855|ENST00000159087|ANO8;nc|ENSG00000074855|Q9HCE9-2|ANO8	ENSG00000074855|ENST00000159087|ANO8	ENSG00000074855|ENST00000159087|ANO8	MULTI-SECPEP	A375_MHC_IP_R2	2	500.1375427246094	2	499.738148	997.461744	-0.7746	-0.0003871	-0.13725	-6.8589E-05	-0.91185	-0.00045569	499.73802927091793	40.849	0.50922	41.624	41.386	41.895	0.77451					24	9	3	0	0	0	0.15631	1	15141	15141		69.338	42.455	1	9515500			887	1595	592	600	869	869					-0.0370886028475752
AEFGKSFTW	9	Unmodified	_AEFGKSFTW_					0	0	0		ENSG00000245680|ENST00000532828|ZNF585B	ENSG00000245680|ENST00000532828|ZNF585B	ENSG00000245680|ENST00000532828|ZNF585B	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1583251953125	2	536.758549	1071.50255	-0.67133	-0.00036034	-1.0298	-0.00055278	-1.7012	-0.00091312	536.7586453493121	79.702	0.66653	79.702	79.161	79.828	0					20	12	2	0	0	0	0.4465	1	29071	29071		38.176	38.176	1	2234400			888	9827	593	601	870	870					-0.030345189651598048
AEFHQIEGV	9	Unmodified	_AEFHQIEGV_					0	0	0		ENSG00000179115|ENST00000314606|FARSA;nc|ENSG00000179115|Q9Y285-2|FARSA	ENSG00000179115|ENST00000314606|FARSA	ENSG00000179115|ENST00000314606|FARSA	MULTI-MSMS	A375_MHC_IP_R1	1	515.65380859375	2	515.253631	1028.49271	-0.68837	-0.00035468	0.14389	7.4139E-05	-0.54448	-0.00028054	515.2538261437298	46.92	0.61555	46.92	46.647	47.263	0					25	11	3	0	0	0	0.0090297	1	16474	16474		99.755	44.982	1	7163800			889	8205	594	602	871	871					-0.020397069705268223
AEFHQIEGV	9	Unmodified	_AEFHQIEGV_					0	0	0		ENSG00000179115|ENST00000314606|FARSA;nc|ENSG00000179115|Q9Y285-2|FARSA	ENSG00000179115|ENST00000314606|FARSA	ENSG00000179115|ENST00000314606|FARSA	MULTI-MSMS	A375_MHC_IP_R2	2	515.6532592773438	2	515.253631	1028.49271	-0.68515	-0.00035303	0.072793	3.7507E-05	-0.61236	-0.00031552	515.2536354697559	46.151	0.50508	46.916	46.654	47.159	0.76518					19	9	3	0	0	0	0.0092511	2	17268	17268;17310		103.42	59.561	1	5841100			890	8205	594	602	872;873	872					-0.020397069705268223
AEFIKNYMKKY	11	Unmodified	_AEFIKNYMKKY_					0	0	0		nc|ENSG00000112941|Q5XG87-2|TENT4A;ENSG00000112941|ENST00000230859|TENT4A	nc|ENSG00000112941|Q5XG87-2|TENT4A	nc|ENSG00000112941|Q5XG87-2|TENT4A	MULTI-SECPEP	A375_MHC_IP_R1	1	478.7181091308594	3	478.919846	1433.73771	-0.76986	-0.0003687	0.0010882	5.2114E-07	-0.76877	-0.00036818	478.92005036190466	41.292	0.20322	41.292	41.164	41.368	0					5	3	2	0	0	0	0.98856	1	14241	14241		10.315	9.8093	1	1097600			891	3119	595	603	874	874					0.03818830448085464
AEFIKNYMKKY	11	Unmodified	_AEFIKNYMKKY_					0	0	0		nc|ENSG00000112941|Q5XG87-2|TENT4A;ENSG00000112941|ENST00000230859|TENT4A	nc|ENSG00000112941|Q5XG87-2|TENT4A	nc|ENSG00000112941|Q5XG87-2|TENT4A	MULTI-MATCH	A375_MHC_IP_R2	2		3	478.919846	1433.73771	-0.6098	-0.00029205	0.32389	0.00015512	-0.28591	-0.00013693	478.9200640634491	40.31	0.25336	41.084	40.93	41.183	0.77451	-0.1038	0.00036487	NaN	10.315	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1024800			892	3119	595	603							0.03818830448085464
AEFIMLNHF	9	Unmodified	_AEFIMLNHF_					0	0	0		ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2;nc|ENSG00000006744|Q9BQ52-3|ELAC2;ENST00000484122.5_1_17:12896137-12899859:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	561.6429443359375	2	561.276052	1120.53755	-0.42821	-0.00024034	0.65398	0.00036706	0.22578	0.00012672	561.2758999180853	103.14	0.86368	103.14	102.4	103.27	0					21	16	2	0	0	0	0.50702	1	37828	37828		32.305	13.932	1	1444600			893	929	596	604	875	875					-0.017895994288437578
AEFIMLNHF	9	Unmodified	_AEFIMLNHF_					0	0	0		ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2;nc|ENSG00000006744|Q9BQ52-3|ELAC2;ENST00000484122.5_1_17:12896137-12899859:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	561.675537109375	2	561.276052	1120.53755	-0.58754	-0.00032977	0.11537	6.4755E-05	-0.47217	-0.00026502	561.2760874695987	102.16	0.40598	102.93	102.77	103.18	0.76428					17	7	3	0	0	0	0.24548	1	38758	38758		52.268	30.522	1	1304600			894	929	596	604	876	876					-0.017895994288437578
AEFIPADRK	9	Unmodified	_AEFIPADRK_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47;WDR47|p.V172A|1|0.35|ENSG00000085433|chr1:109011531-109011531|A/G|missense_variant	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MULTI-SECPEP	A375_MHC_IP_R1	1	523.6689453125	2	523.785099	1045.55564	-0.61883	-0.00032414	-3.9384	-0.0020629	-4.5572	-0.002387	523.7832368077108	36.313	0.20475	36.313	36.184	36.389	0					5	3	2	0	0	0	0.78348	1	12153	12153		7.9102	3.5809	1	691740			895	1812	597	605	877	877					0.03468858817495857
AEFIPADRKL	10	Unmodified	_AEFIPADRKL_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47;WDR47|p.V172A|1|0.35|ENSG00000085433|chr1:109011531-109011531|A/G|missense_variant	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MULTI-MSMS	A375_MHC_IP_R1	1	387.62060546875	3	387.220513	1158.63971	0.28453	0.00011017	0.35104	0.00013593	0.63557	0.00024611	387.22055563117266	43.608	0.6619	43.608	43.197	43.859	0					17	12	2	0	0	0	0.70334	1	15213	15213		6.6235	0	1	2812800			896	1812	598	606	878	878					0.0667338991440829
AEFIPADRKL	10	Unmodified	_AEFIPADRKL_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47;WDR47|p.V172A|1|0.35|ENSG00000085433|chr1:109011531-109011531|A/G|missense_variant	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MULTI-MSMS	A375_MHC_IP_R2	2	387.9551086425781	3	387.220513	1158.63971	-0.068344	-2.6464E-05	0.45291	0.00017538	0.38457	0.00014891	387.2205027057369	42.754	0.45622	43.527	43.369	43.826	0.7724					18	8	3	0	0	0	0.56097	1	15935	15935		16.275	7.8302	1	2430500			897	1812	598	606	879	879					0.0667338991440829
AEFIVGGKY	9	Unmodified	_AEFIVGGKY_					0	0	0		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	MULTI-SECPEP	A375_MHC_IP_R1	1	492.6632995605469	2	492.263468	982.512382	-0.29716	-0.00014628	-0.026807	-1.3196E-05	-0.32397	-0.00015948	492.26339706530854	57.322	0.61055	57.322	57.007	57.618	0					22	11	3	0	0	0	0.24324	1	20532	20532		53.833	29.159	1	7027000			898	3174	599	607	880	880					0.02042669040235978
AEFIVGGKY	9	Unmodified	_AEFIVGGKY_					0	0	0		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	MULTI-SECPEP	A375_MHC_IP_R2	2	492.6634521484375	2	492.263468	982.512382	-0.87936	-0.00043288	0.22132	0.00010895	-0.65803	-0.00032393	492.26353121634594	56.469	0.66373	57.219	56.948	57.612	0.75015					26	12	3	0	0	0	0.24324	1	21334	21334		53.833	47.11	1	7171100			899	3174	599	607	881	881					0.02042669040235978
AEFKEAFQL	9	Unmodified	_AEFKEAFQL_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF	ENSG00000092841|ENST00000550697|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-SECPEP	A375_MHC_IP_R1	1	542.17919921875	2	541.779482	1081.54441	-0.43575	-0.00023608	0.15488	8.3909E-05	-0.28087	-0.00015217	541.779508986071	78.53	1.014	78.53	78.251	79.265	0					49	19	3	0	0	0	0.0059578	1	28626	28626		148.27	68.672	1	71363000			900	2012	600	608	882	882					0.0069003672338112665
AEFKEAFQL	9	Unmodified	_AEFKEAFQL_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF	ENSG00000092841|ENST00000550697|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	A375_MHC_IP_R2	2	542.1796875	2	541.779482	1081.54441	-0.83906	-0.00045459	0.24301	0.00013166	-0.59605	-0.00032293	541.7795932220599	77.751	1.3225	78.494	78.113	79.436	0.74293					57	25	3	0	0	0	0.0042663	1	29468	29468		160.69	64.579	1	52493000			901	2012	600	608	883	883					0.0069003672338112665
AEFKEAFQLF	10	Unmodified	_AEFKEAFQLF_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF	ENSG00000092841|ENST00000550697|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	A375_MHC_IP_R2	2	615.7130737304688	2	615.313689	1228.61282	-0.46484	-0.00028602	0.14595	8.9806E-05	-0.31889	-0.00019622	615.3136437805409	109.97	1.0225	110.72	110.38	111.41	0.74611					57	19	4	0	0	0	0.00079117	1	41456	41456		148.27	69.54	1	29668000			902	2012	601	609	884	884					0.007662813032311533
AEFKEAFQLF	10	Unmodified	_AEFKEAFQLF_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF	ENSG00000092841|ENST00000550697|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MATCH	A375_MHC_IP_R1	1		2	615.313689	1228.61282	-0.20683	-0.00012726	0.10327	6.3543E-05	-0.10356	-6.372E-05	615.3136577175609	110.82	1.0245	110.82	110.49	111.52	0	0.05297	-1.2116E-05	NaN	148.27	50	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28960000			903	2012	601	609							0.007662813032311533
AEFKEAFSLF	10	Unmodified	_AEFKEAFSLF_					0	0	0		ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000556757.5_1_14:90863574-90867886:+|nuORF	ENST00000597868.5_1_19:47104691-47111872:+|nuORF	ENST00000597868.5_1_19:47104691-47111872:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	595.200439453125	2	594.800414	1187.58628	-0.013874	-8.2521E-06	-0.85267	-0.00050717	-0.86654	-0.00051542	594.8002600372872	112.91	1.1152	112.91	112.08	113.19	0					29	15	3	0	0	0	0.62001	1	41333	41333		40.239	2.0636	1	3990900			904	5448	602	610	885	885					-1.4075880926611717E-05
AEFKKIFGL	9	Unmodified	_AEFKKIFGL_					0	0	0		ENSG00000121931|ENST00000369763|LRIF1;nc|ENSG00000121931|Q5T3J3-2|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	MULTI-MSMS	A375_MHC_IP_R1	1	351.942626953125	3	351.542816	1051.60662	-0.12082	-4.2474E-05	0.045363	1.5947E-05	-0.075458	-2.6527E-05	351.5426799786867	74.984	0.50672	74.984	74.805	75.312	0					19	9	3	0	0	0	0.59266	1	27346	27346		15.248	15.248	1	1566800			905	3750	603	611	886	886					0.08287807862393493
AEFKKIFGL	9	Unmodified	_AEFKKIFGL_					0	0	0		ENSG00000121931|ENST00000369763|LRIF1;nc|ENSG00000121931|Q5T3J3-2|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	MULTI-SECPEP	A375_MHC_IP_R1	1	527.2100219726562	2	526.810585	1051.60662	-0.49132	-0.00025883	-0.59283	-0.00031231	-1.0842	-0.00057115	526.8101585144086	75.035	0.70921	75.035	74.704	75.413	0					28	13	3	0	0	0	0.11849	1	27317	27317		70.332	53.39	1	6665300			906	3750	603	611	887	887					0.08287807862393493
AEFKKIFGL	9	Unmodified	_AEFKKIFGL_					0	0	0		ENSG00000121931|ENST00000369763|LRIF1;nc|ENSG00000121931|Q5T3J3-2|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	MULTI-MSMS	A375_MHC_IP_R2	2	351.9430236816406	3	351.542816	1051.60662	-0.2334	-8.205E-05	0.23203	8.1569E-05	-0.0013693	-4.8138E-07	351.5428747125403	74.044	0.40544	74.782	74.553	74.958	0.73752					12	7	2	0	0	0	0.59266	1	28128	28128		15.248	6.5031	1	2457400			907	3750	603	611	888	888					0.08287807862393493
AEFKKIFGL	9	Unmodified	_AEFKKIFGL_					0	0	0		ENSG00000121931|ENST00000369763|LRIF1;nc|ENSG00000121931|Q5T3J3-2|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	MULTI-SECPEP	A375_MHC_IP_R2	2	526.6407470703125	2	526.810585	1051.60662	-0.46	-0.00024233	-0.25514	-0.00013441	-0.71514	-0.00037674	526.8103054806096	74.083	0.86607	74.821	74.449	75.315	0.73751					27	16	3	0	0	0	0.074405	1	28100	28100		79.596	45.494	1	5195300			908	3750	603	611	889	889					0.08287807862393493
AEFKNNVLLFP	11	Unmodified	_AEFKNNVLLFP_					0	0	0		tr|U7SMV6|U7SMV6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01844PE=4SV=1	tr|U7SMV6|U7SMV6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01844PE=4SV=1	tr|U7SMV6|U7SMV6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01844PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	646.7556762695312	2	646.355888	1290.69722	-0.60848	-0.00039329	-0.35177	-0.00022737	-0.96025	-0.00062066	646.3558354992965	91.006	0.70911	91.006	90.59	91.299	0					30	13	3	0	0	0	0.98591	1	33414	33414		13.906	0	1	4593600			909	29539	604	612	890	890					0.06350232119984867
AEFKTKYKL	9	Unmodified	_AEFKTKYKL_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MSMS	A375_MHC_IP_R1	1	376.9537048339844	3	376.553492	1126.63865	0.12871	4.8465E-05	0.01591	5.9908E-06	0.14462	5.4456E-05	376.55348340584897	27.003	0.4508	27.003	26.779	27.229	0					18	8	3	0	0	0	0.14659	1	8117	8117		42.312	42.312	1	9806300			910	3678	605	613	891	891					0.08039175545513899
AEFKTKYKL	9	Unmodified	_AEFKTKYKL_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MSMS	A375_MHC_IP_R2	2	376.9534912109375	3	376.553492	1126.63865	-0.17932	-6.7522E-05	0.21128	7.9558E-05	0.031963	1.2036E-05	376.8877994028906	26.323	0.3559	26.983	26.805	27.161	0.65992					15	6	3	0	0	0	0.16286	1	8893	8893		40.725	26.32	1	8920200			911	3678	605	613	892	892					0.08039175545513899
AEFKVTIKY	9	Unmodified	_AEFKVTIKY_					0	0	0		ENSG00000053372|ENST00000330263|MRTO4;ENST00000515049.1_1_17:48017011-48017101:+|nuORF	ENSG00000053372|ENST00000330263|MRTO4	ENSG00000053372|ENST00000330263|MRTO4	MULTI-MSMS	A375_MHC_IP_R1	1	367.2780456542969	3	366.877975	1097.6121	0.34075	0.00012501	0.20256	7.4314E-05	0.54331	0.00019933	366.8779642137401	53.61	1.6732	53.61	53.148	54.822	0					89	32	4	0	0	0	0.43945	1	19284	19284		22.775	10.6	1	15061000			912	1247	606	614	893	893					0.06719486654174034
AEFKVTIKY	9	Unmodified	_AEFKVTIKY_					0	0	0		ENSG00000053372|ENST00000330263|MRTO4;ENST00000515049.1_1_17:48017011-48017101:+|nuORF	ENSG00000053372|ENST00000330263|MRTO4	ENSG00000053372|ENST00000330263|MRTO4	MULTI-SECPEP	A375_MHC_IP_R1	1	550.2137451171875	2	549.813325	1097.6121	-0.45451	-0.00024989	0.23412	0.00012872	-0.22039	-0.00012117	549.8133044331572	53.626	1.1656	53.626	53.25	54.415	0					48	22	3	0	0	0	0.15736	1	19082	19082		64.927	42.19	1	5417300			913	1247	606	614	894	894					0.06719486654174034
AEFKVTIKY	9	Unmodified	_AEFKVTIKY_					0	0	0		ENSG00000053372|ENST00000330263|MRTO4;ENST00000515049.1_1_17:48017011-48017101:+|nuORF	ENSG00000053372|ENST00000330263|MRTO4	ENSG00000053372|ENST00000330263|MRTO4	MULTI-MSMS	A375_MHC_IP_R2	2	367.27752685546875	3	366.877975	1097.6121	-0.37792	-0.00013865	0.29754	0.00010916	-0.080384	-2.9491E-05	366.87801953276625	52.762	2.0359	53.513	53.133	55.169	0.75105					95	39	4	0	0	0	0.16286	2	19843	19843;20080		40.725	27.11	1	16239000			914	1247	606	614	895;896	895					0.06719486654174034
AEFKVTIKY	9	Unmodified	_AEFKVTIKY_					0	0	0		ENSG00000053372|ENST00000330263|MRTO4;ENST00000515049.1_1_17:48017011-48017101:+|nuORF	ENSG00000053372|ENST00000330263|MRTO4	ENSG00000053372|ENST00000330263|MRTO4	MULTI-SECPEP	A375_MHC_IP_R2	2	550.2132568359375	2	549.813325	1097.6121	-1.3032	-0.0007165	0.58896	0.00032382	-0.71421	-0.00039268	549.8135833222335	52.748	1.4258	53.499	53.183	54.609	0.75105					49	27	3	0	0	0	0.46121	1	19891	19891		32.037	13.891	1	4048100			915	1247	606	614	897	897					0.06719486654174034
AEFNKFKPGA	10	Unmodified	_AEFNKFKPGA_					0	0	0		nc|ENSG00000151962|Q8TBY0-2|RBM46;nc|ENSG00000151962|Q8TBY0-3|RBM46;ENSG00000151962|ENST00000281722|RBM46	nc|ENSG00000151962|Q8TBY0-2|RBM46	nc|ENSG00000151962|Q8TBY0-2|RBM46	MULTI-MSMS	A375_MHC_IP_R2	2	370.5978698730469	3	370.197708	1107.57129	-0.10451	-3.8688E-05	0.10906	4.0375E-05	0.0045561	1.6866E-06	370.19779796036386	25.899	0.5605	26.559	26.347	26.907	0.65992					25	10	4	0	0	0	0.70442	1	8723	8723		10.315	0.16466	1	5553800			916	5938	607	615	898	898					0.021811453345662812
AEFNLRHDW	9	Unmodified	_AEFNLRHDW_					0	0	0		ENSG00000100350|ENST00000397224|FOXRED2	ENSG00000100350|ENST00000397224|FOXRED2	ENSG00000100350|ENST00000397224|FOXRED2	MULTI-MSMS	A375_MHC_IP_R1	1	396.92486572265625	3	396.524595	1186.55196	0.11861	4.7033E-05	0.35106	0.0001392	0.46967	0.00018623	396.5248005394578	54.088	0.7083	54.088	53.555	54.263	0					21	13	2	0	0	0	0.25114	1	19276	19276		34.222	15.882	1	3668000			917	2165	608	616	899	899					-0.03385810956365276
AEFNLRHDW	9	Unmodified	_AEFNLRHDW_					0	0	0		ENSG00000100350|ENST00000397224|FOXRED2	ENSG00000100350|ENST00000397224|FOXRED2	ENSG00000100350|ENST00000397224|FOXRED2	MULTI-SECPEP	A375_MHC_IP_R2	2	396.9244384765625	3	396.524595	1186.55196	-0.71103	-0.00028194	0.72008	0.00028553	0.009058	3.5917E-06	396.52482573788717	53.324	0.51036	54.075	53.739	54.249	0.75105					17	9	3	0	0	0	0.47206	1	20105	20105		39.213	20.492	1	3708400			918	2165	608	616	900	900					-0.03385810956365276
AEFNRIMSL	9	Oxidation (M)	_AEFNRIM(Oxidation (M))SL_		AEFNRIM(1)SL		AEFNRIM(85)SL	0	0	1		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;ENST00000497637.5_1_19:39218501-39220069:+|nuORF	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	A375_MHC_IP_R1	1	549.1760864257812	2	548.776416	1095.53828	-0.46823	-0.00025696	-0.284	-0.00015585	-0.75223	-0.00041281	548.7763666503661	55.895	0.55908	55.895	55.584	56.143	0					17	10	2	0	0	0	0.019126	1	19980	19980		84.522	29.019	1	5946200			919	4242	609	617	901	901		218			-0.0056680477980535215
AEFNRIMSL	9	Unmodified	_AEFNRIMSL_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;ENST00000497637.5_1_19:39218501-39220069:+|nuORF	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	A375_MHC_IP_R1	1	541.208251953125	2	540.778959	1079.54336	-0.76366	-0.00041297	0.15243	8.2432E-05	-0.61123	-0.00033054	540.7789389113107	80.82	0.60978	80.82	80.541	81.151	0					25	11	3	0	0	0	0.023053	1	29548	29548		96.936	58.962	1	7796700			920	4242	609	618	902	902					0.006774990828262162
AEFNRIMSL	9	Unmodified	_AEFNRIMSL_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;ENST00000497637.5_1_19:39218501-39220069:+|nuORF	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-SECPEP	A375_MHC_IP_R2	2	541.1784057617188	2	540.778959	1079.54336	-0.80445	-0.00043503	0.091214	4.9327E-05	-0.71323	-0.0003857	540.7787795322512	80.011	0.8626	80.755	80.149	81.011	0.74473					29	16	3	0	0	0	0.051108	1	30338	30338		103.82	58.124	1	6330400			921	4242	609	618	903	903					0.006774990828262162
AEFNSTPAVF	10	Unmodified	_AEFNSTPAVF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-SECPEP	A375_MHC_IP_R1	1	542.1600341796875	2	541.761289	1081.50803	-0.78063	-0.00042292	-0.38969	-0.00021112	-1.1703	-0.00063404	541.7609700885283	91.126	0.65845	91.126	90.794	91.452	0					25	12	3	0	0	0	0.050206	1	33486	33486		96.367	60.24	1	2392100			922	1676	610	619	904	904					-0.02946840173331111
AEFNSTPAVF	10	Unmodified	_AEFNSTPAVF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	A375_MHC_IP_R2	2	541.6736450195312	2	541.761289	1081.50803	-0.72865	-0.00039476	-0.3442	-0.00018647	-1.0729	-0.00058123	541.7609177014101	90.492	0.60965	91.227	90.904	91.514	0.7345					20	11	3	0	0	0	0.39599	1	34400	34400		34.402	13.531	1	3916400			923	1676	610	619	905	905					-0.02946840173331111
AEFNSTPAVF	10	Unmodified	_AEFNSTPAVF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	A375_MHC_IP_R2	2	1082.2825927734375	1	1082.5153	1081.50803	0.19013	0.00020582	-0.3302	-0.00035745	-0.14007	-0.00015163	1082.5148659435295	90.492	0.55854	91.227	90.904	91.463	0.7345					20	10	3	0	0	0	0.037053	1	34423	34423		79.596	41.622	1	3630100			924	1676	610	619	906	906					-0.02946840173331111
AEFNSTPAVF	10	Unmodified	_AEFNSTPAVF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MATCH	A375_MHC_IP_R1	1		1	1082.5153	1081.50803	-0.057152	-6.1868E-05	0.030181	3.2672E-05	-0.026971	-2.9196E-05	1082.5151502610356	91.163	0.50516	91.163	90.896	91.401	0	-0.031803	0.00023943	NaN	79.596	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3978300			925	1676	610	619							-0.02946840173331111
AEFPDEPKW	9	Unmodified	_AEFPDEPKW_					0	0	0		ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-MSMS	A375_MHC_IP_R1	1	560.1610107421875	2	559.761289	1117.50803	-0.43478	-0.00024337	0.06946	3.8881E-05	-0.36532	-0.00020449	559.7613108123261	70.605	0.81993	70.605	70.185	71.005	0					38	15	3	0	0	0	0.035419	1	25570	25570		70.332	40.491	1	34931000			926	1809	611	620	907	907					-0.04602840173333789
AEFPDEPKW	9	Unmodified	_AEFPDEPKW_					0	0	0		ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-MSMS	A375_MHC_IP_R2	2	560.16064453125	2	559.761289	1117.50803	-0.59807	-0.00033477	0.075145	4.2063E-05	-0.52292	-0.00029271	559.7613290467914	70.038	0.7118	70.773	70.437	71.149	0.73421					33	13	3	0	0	0	0.017727	2	26491	26491;26628		86.332	50.205	1	44702000			927	1809	611	620	908;909	908					-0.04602840173333789
AEFPDHLGGGY	11	Unmodified	_AEFPDHLGGGY_					0	0	0		ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-SECPEP	A375_MHC_IP_R1	1	582.1167602539062	2	581.76182	1161.50909	-0.13023	-7.576E-05	0.45804	0.00026647	0.32781	0.00019071	581.761833865846	62.293	1.3322	62.293	61.891	63.223	0					71	25	4	0	0	0	0.04068	1	22468	22468		134.3	98.169	1	64174000			928	6530	612	621	910	910					-0.06520625804409974
AEFPLDPQL	9	Unmodified	_AEFPLDPQL_					0	0	0		ENSG00000109606|ENST00000336812|DHX15;ENST00000503562.1_1_4:24541566-24543501:-|nuORF;ENST00000503562.1_1_4:24541777-24541846:-|nuORF	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	A375_MHC_IP_R1	1	515.666015625	2	515.266207	1028.51786	-0.19677	-0.00010139	0.26561	0.00013686	0.068841	3.5471E-05	515.2662631180768	116.11	0.71199	116.11	115.83	116.55	0					33	13	3	0	0	0	0.0015808	1	42570	42570		155.03	109.01	1	15464000			929	2877	613	622	911	911					0.004743478320506256
AEFPLDPQL	9	Unmodified	_AEFPLDPQL_					0	0	0		ENSG00000109606|ENST00000336812|DHX15;ENST00000503562.1_1_4:24541566-24543501:-|nuORF;ENST00000503562.1_1_4:24541777-24541846:-|nuORF	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	A375_MHC_IP_R1	1	1029.5872802734375	1	1029.52514	1028.51786	0.50092	0.00051571	-0.10973	-0.00011297	0.39119	0.00040274	1029.5249299960972	116.16	0.66115	116.16	115.83	116.5	0					25	12	3	0	0	0	0.0096822	1	42633	42633		110.55	70.595	1	9112500			930	2877	613	622	912	912					0.004743478320506256
AEFPLDPQL	9	Unmodified	_AEFPLDPQL_					0	0	0		ENSG00000109606|ENST00000336812|DHX15;ENST00000503562.1_1_4:24541566-24543501:-|nuORF;ENST00000503562.1_1_4:24541777-24541846:-|nuORF	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	A375_MHC_IP_R2	2	515.6660766601562	2	515.266207	1028.51786	-0.58053	-0.00029913	-0.16994	-8.7563E-05	-0.75047	-0.00038669	515.2660397683862	115.38	0.7104	116.07	115.73	116.44	0.68999					34	13	3	0	0	0	0.0018976	1	43455	43455		145.13	145.13	1	14474000			931	2877	613	622	913	913					0.004743478320506256
AEFPLDPQL	9	Unmodified	_AEFPLDPQL_					0	0	0		ENSG00000109606|ENST00000336812|DHX15;ENST00000503562.1_1_4:24541566-24543501:-|nuORF;ENST00000503562.1_1_4:24541777-24541846:-|nuORF	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	A375_MHC_IP_R2	2	1029.8746337890625	1	1029.52514	1028.51786	0.22056	0.00022707	-0.65415	-0.00067347	-0.43359	-0.00044639	1029.5243003999487	115.42	0.65862	116.11	115.78	116.44	0.68999					19	12	2	0	0	0	0.013591	1	43494	43494		106.94	82.92	1	12839000			932	2877	613	622	914	914					0.004743478320506256
AEFQDSLNF	9	Unmodified	_AEFQDSLNF_					0	0	0		ENSG00000120709|ENST00000239906|FAM53C	ENSG00000120709|ENST00000239906|FAM53C	ENSG00000120709|ENST00000239906|FAM53C	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1427612304688	2	535.743096	1069.47164	-0.68779	-0.00036848	0.13589	7.2804E-05	-0.5519	-0.00029568	535.7432780033978	98.813	0.50973	98.813	98.557	99.067	0					16	9	2	0	0	0	0.65527	1	36323	36323		17.113	0	1	1184300			933	3682	614	623	915	915					-0.060317170700500355
AEFQDSLNF	9	Unmodified	_AEFQDSLNF_					0	0	0		ENSG00000120709|ENST00000239906|FAM53C	ENSG00000120709|ENST00000239906|FAM53C	ENSG00000120709|ENST00000239906|FAM53C	MULTI-SECPEP	A375_MHC_IP_R2	2	535.4367065429688	2	535.743096	1069.47164	-0.86593	-0.00046391	-0.14797	-7.9273E-05	-1.0139	-0.00054319	535.743104141909	98.189	0.40674	98.949	98.691	99.098	0.75977					11	7	2	0	0	0	0.69507	1	37185	37185		2.9952	0	1	1078800			934	3682	614	623	916	916					-0.060317170700500355
AEFQGRSTEF	10	Unmodified	_AEFQGRSTEF_					0	0	0		ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	MULTI-MSMS	A375_MHC_IP_R1	1	586.67236328125	2	586.272552	1170.53055	-0.22108	-0.00012961	-0.21934	-0.00012859	-0.44042	-0.00025821	586.2724532675519	39.338	0.30356	39.338	39.187	39.491	0					13	5	3	0	0	0	0.01042	1	13475	13475		92.201	57.799	1	4122400			935	9414	615	624	917	917					-0.047892407756989996
AEFQGRSTEF	10	Unmodified	_AEFQGRSTEF_					0	0	0		ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	MULTI-MSMS	A375_MHC_IP_R2	2	586.6724853515625	2	586.272552	1170.53055	-0.88328	-0.00051784	0.14509	8.5062E-05	-0.73819	-0.00043278	586.2726887102727	38.652	0.40785	39.427	39.2	39.607	0.77451					16	7	3	0	0	0	0.015903	1	14259	14259		88.364	55.578	1	4816600			936	9414	615	624	918	918					-0.047892407756989996
AEFQGYNVL	9	Unmodified	_AEFQGYNVL_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-SECPEP	A375_MHC_IP_R1	1	521.1556396484375	2	520.756007	1039.49746	-0.38906	-0.00020261	-0.64491	-0.00033584	-1.034	-0.00053844	521.256959926186	93.37	0.66333	93.37	93.023	93.686	0					18	12	2	0	0	0	0.59098	1	34370	34370		16.149	0.30192	1	4650100			937	6414	616	625	919	919					-0.020708228277499074
AEFQHFLRG	9	Unmodified	_AEFQHFLRG_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R2	2	553.6846313476562	2	552.78289	1103.55123	-1.1936	-0.0006598	0.82071	0.00045367	-0.37289	-0.00020612	552.7830650672269	37.365	0.61308	38.136	37.917	38.53	0.7709					33	11	4	0	0	0	0.60101	1	13756	13756		14.838	3.198	1	6341500			938	9114	617	626	920	920					0.003593943945816136
AEFRDPLGY	9	Unmodified	_AEFRDPLGY_					0	0	0		nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	MULTI-SECPEP	A375_MHC_IP_R1	1	533.7050170898438	2	534.261456	1066.50836	-0.50748	-0.00027113	0.16521	8.8267E-05	-0.34227	-0.00018286	534.2614654644232	72.296	2.024	72.296	71.565	73.589	0					108	39	5	0	0	0	0.038931	1	26300	26300		100.09	65.689	1	125010000			939	4020	618	627	921	921					-0.022234204534925084
AEFRDPLGY	9	Unmodified	_AEFRDPLGY_					0	0	0		nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	MULTI-SECPEP	A375_MHC_IP_R2	2	533.7054443359375	2	534.261456	1066.50836	-1.082	-0.00057809	0.21957	0.00011731	-0.86247	-0.00046078	534.2614788573503	71.671	1.5714	72.405	71.756	73.327	0.73421					97	30	5	0	0	0	0.10362	1	27144	27144		72.968	43.886	1	123200000			940	4020	618	627	922	922					-0.022234204534925084
AEFRRAKV	8	Unmodified	_AEFRRAKV_					0	0	0		ENST00000559272.1_1_15:79756054-79760723:+|nuORF;ENSG00000169330|ENST00000305428|MINAR1	ENST00000559272.1_1_15:79756054-79760723:+|nuORF	ENST00000559272.1_1_15:79756054-79760723:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	488.6623840332031	2	488.787976	975.561398	-0.20908	-0.00010219	3.2584	0.0015926	3.0493	0.0014905	488.7895272386739	62.137	0.25457	62.137	61.994	62.249	0					7	4	2	0	0	0	0.95423	1	22415	22415		7.9102	0	1	622740			941	7400	619	628	923	923					0.07264002119848101
AEFRRLSLA	9	Unmodified	_AEFRRLSLA_					0	0	0			REV__nc|ENSG00000151208|Q8TDM6-2|DLG5	REV__nc|ENSG00000151208|Q8TDM6-2|DLG5	MULTI-SECPEP	A375_MHC_IP_R2	2	355.46002197265625	3	354.873336	1061.59818	-0.36303	-0.00012883	0.25855	9.1753E-05	-0.10448	-3.7076E-05	354.87343119459143	40.608	0.30589	41.383	41.234	41.54	0.77451					9	5	2	0	0	0	0.80713	1	15075	15075		4.1895	0.31317	1	1647900	+		942	19742	620	629	924	924					0.06984253945779528
AEFRRLWYDA	10	Unmodified	_AEFRRLWYDA_					0	0	0			REV__ENSG00000155252|ENST00000370631|PI4K2A	REV__ENSG00000155252|ENST00000370631|PI4K2A	MULTI-SECPEP	A375_MHC_IP_R1	1	664.2327270507812	2	663.833111	1325.65167	-0.54088	-0.00035906	0.14329	9.5122E-05	-0.39759	-0.00026394	663.8330221374825	75.125	1.0121	75.125	74.502	75.514	0					49	19	3	0	0	0	0.92514	1	27482	27482		8.1555	8.1555	1	4193200	+		943	19917	621	630	925	925					0.0018700665762025892
AEFRRMSF	8	Unmodified	_AEFRRMSF_					0	0	0			REV__ENSG00000237700|ENST00000437300|PRAMEF33	REV__ENSG00000237700|ENST00000437300|PRAMEF33	MULTI-SECPEP	A375_MHC_IP_R2	2	522.433837890625	2	522.258194	1042.50183	-0.59467	-0.00031057	-0.39663	-0.00020714	-0.9913	-0.00051772	522.2572318156564	77.43	0.76636	78.173	77.857	78.624	0.74293					22	14	2	0	0	0	0.97144	1	29513	29513		14.582	10.252	1	1159500	+		944	22026	622	631	926	926					-0.017716368858373244
AEFSKNQEV	9	Unmodified	_AEFSKNQEV_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST;REV__nc|ENSG00000151914|Q03001-8|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	A375_MHC_IP_R2	2	526.6566772460938	2	526.256371	1050.49819	-0.2778	-0.00014619	1.2565	0.00066123	0.97869	0.00051504	526.2568751181693	115.42	0.55901	116.11	115.73	116.29	0.68999					15	10	3	0	0	0	0.65527	1	43541	43541		22.736	0	1	2539800	+		945	19783;27289	623	632	927	927					-0.025040281787141794
AEFSKNQEV	9	Unmodified	_AEFSKNQEV_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST;REV__nc|ENSG00000151914|Q03001-8|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-MATCH	A375_MHC_IP_R1	1		2	526.256371	1050.49819	-0.14764	-7.7696E-05	2.1201	0.0011157	1.9724	0.001038	526.2574245439703	116.18	0.55985	116.18	115.89	116.45	0	0.032772	0.00047454	NaN	22.736	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1901900	+		946	19783;27289	623	632							-0.025040281787141794
AEFSQQTNI	9	Unmodified	_AEFSQQTNI_					0	0	0			REV__ENSG00000115233|ENST00000409682|PSMD14	REV__ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	A375_MHC_IP_R1	1	519.6846923828125	2	519.248546	1036.48254	-0.33485	-0.00017387	-0.64716	-0.00033604	-0.98202	-0.00050991	519.2482481331949	54.188	1.3172	54.188	53.453	54.771	0					49	25	4	0	0	0	0.70886	1	19240	19240		6.2058	0	1	13951000	+		947	17864	624	633	928	928					-0.03424314695780595
AEFTKSIAKF	10	Unmodified	_AEFTKSIAKF_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	A375_MHC_IP_R1	1	381.6133117675781	3	381.213246	1140.61791	0.22977	8.7593E-05	0.056665	2.1602E-05	0.28644	0.00010919	381.2131665822728	46.639	0.7618	46.639	46.345	47.107	0					28	14	4	0	0	0	0.085909	1	16363	16363		66.683	52.278	1	13946000			948	3537	625	634	929	929					0.05322585165822602
AEFTKSIAKF	10	Unmodified	_AEFTKSIAKF_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-SECPEP	A375_MHC_IP_R1	1	572.1112670898438	2	571.316232	1140.61791	-0.38728	-0.00022126	0.20449	0.00011683	-0.18279	-0.00010443	571.3163866451226	46.667	0.70662	46.667	46.245	46.952	0					31	13	4	0	0	0	0.010364	1	16393	16393		143.21	107.09	1	19297000			949	3537	625	634	930	930					0.05322585165822602
AEFTKSIAKF	10	Unmodified	_AEFTKSIAKF_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	A375_MHC_IP_R2	2	381.6131286621094	3	381.213246	1140.61791	-0.016227	-6.1861E-06	0.29193	0.00011129	0.2757	0.0001051	381.2132572660445	45.777	0.55304	46.543	46.252	46.805	0.76519					28	10	4	0	0	0	0.085909	1	17109	17109		66.683	66.683	1	15351000			950	3537	625	634	931	931					0.05322585165822602
AEFTKSIAKF	10	Unmodified	_AEFTKSIAKF_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-SECPEP	A375_MHC_IP_R2	2	571.7166137695312	2	571.316232	1140.61791	-0.27095	-0.0001548	0.19831	0.0001133	-0.072641	-4.1501E-05	571.3162857498929	45.762	0.65486	46.527	46.15	46.805	0.76519					33	12	4	0	0	0	0.010364	1	17101	17101		143.21	110.91	1	22149000			951	3537	625	634	932	932					0.05322585165822602
AEFVGVSHL	9	Unmodified	_AEFVGVSHL_					0	0	0		ENSG00000141101|ENST00000268802|NOB1;ENST00000502915.1_1_4:139481866-139482694:+|nuORF	ENSG00000141101|ENST00000268802|NOB1;ENST00000502915.1_1_4:139481866-139482694:+|nuORF	ENSG00000141101|ENST00000268802|NOB1	MULTI-SECPEP	A375_MHC_IP_R1	1	480.153076171875	2	479.753267	957.491981	-0.36338	-0.00017433	-0.19831	-9.5142E-05	-0.56169	-0.00026947	479.75314243766303	62.105	1.0756	62.105	61.737	62.813	0					45	20	4	0	0	0	0.040439	1	22371	22371		71.134	38.828	1	29854000			952	5217;12802	626	635	933	933					0.01153498380426754
AEFVGVSHL	9	Unmodified	_AEFVGVSHL_					0	0	0		ENSG00000141101|ENST00000268802|NOB1;ENST00000502915.1_1_4:139481866-139482694:+|nuORF	ENSG00000141101|ENST00000268802|NOB1;ENST00000502915.1_1_4:139481866-139482694:+|nuORF	ENSG00000141101|ENST00000268802|NOB1	MULTI-SECPEP	A375_MHC_IP_R2	2	480.1526794433594	2	479.753267	957.491981	-0.87002	-0.0004174	0.08015	3.8452E-05	-0.78987	-0.00037894	479.75327481710707	61.249	1.1078	61.994	61.668	62.776	0.74503					44	21	4	0	0	0	0.011358	1	23153	23153		96.285	63.979	1	35693000			953	5217;12802	626	635	934	934					0.01153498380426754
AEFVIHSGF	9	Unmodified	_AEFVIHSGF_					0	0	0		ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	MULTI-SECPEP	A375_MHC_IP_R2	2	504.15240478515625	2	503.753267	1005.49198	-0.827	-0.00041661	-0.083082	-4.1853E-05	-0.91009	-0.00045846	503.75253902058813	72.348	0.91286	73.083	72.771	73.684	0.73541					22	17	2	0	0	0	0.07754	1	27450	27450		64.236	51.705	1	1712000			954	8505	627	636	935	935					-0.01054501619569237
AEFVPTLFPF	10	Unmodified	_AEFVPTLFPF_					0	0	0			REV__ENSG00000106258|ENST00000222982|CYP3A5	REV__ENSG00000106258|ENST00000222982|CYP3A5	MULTI-SECPEP	A375_MHC_IP_R1	1	390.28875732421875	3	389.874342	1166.6012	0.34461	0.00013436	0.48801	0.00019026	0.83263	0.00032462	389.8728921001176	35.493	0.61157	35.493	35.218	35.83	0					33	11	5	0	0	0	0.9269	1	11882	11882		1.7423	0	1	2984200	+		955	17435	628	637	936	936					0.024560842799019156
AEFYFYLLPC	10	Unmodified	_AEFYFYLLPC_					0	0	0			REV__ENST00000347635.8_1_22:45580993-45581113:+|nuORF	REV__ENST00000347635.8_1_22:45580993-45581113:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	421.9788513183594	3	422.535221	1264.58383	-0.43066	-0.00018197	-0.13077	-5.5255E-05	-0.56143	-0.00023722	422.5350787089225	19.753	0.4044	20.363	20.095	20.499	0.61029					17	7	3	0	0	0	0.93216	1	5997	5997		10.151	0	1	1998100	+		956	23783	629	638	937	937					-0.03787579317418022
AEFYHPAQEY	10	Unmodified	_AEFYHPAQEY_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-SECPEP	A375_MHC_IP_R1	1	628.1744384765625	2	627.774928	1253.5353	-0.75045	-0.00047111	0.97461	0.00061183	0.22416	0.00014072	627.7755571272514	46.778	0.56008	46.778	46.495	47.055	0					25	10	3	0	0	0	0.019582	1	16406	16406		124.95	124.95	1	5139400			957	1500	630	639	938	938					-0.08132356632972915
AEFYHPAQEY	10	Unmodified	_AEFYHPAQEY_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-MSMS	A375_MHC_IP_R2	2	628.1748046875	2	627.774928	1253.5353	-0.74812	-0.00046965	0.90782	0.00056991	0.1597	0.00010025	627.7755447705686	46.088	0.71036	46.853	46.603	47.313	0.76518					29	13	3	0	0	0	0.011463	1	17250	17250		111.31	111.31	1	3582900			958	1500	630	639	939	939					-0.08132356632972915
AEFYHPGQEY	10	Unmodified	_AEFYHPGQEY_					0	0	0		ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	A375_MHC_IP_R1	1	621.1666870117188	2	620.767103	1239.51965	-0.55917	-0.00034711	0.090105	5.5934E-05	-0.46906	-0.00029118	620.7671505761315	46.728	0.66012	46.728	46.395	47.055	0					37	12	4	0	0	0	0.011235	1	16358	16358		124.95	68.776	1	18664000			959	2276	631	640	940	940					-0.09052643149971118
AEFYHPGQEY	10	Unmodified	_AEFYHPGQEY_					0	0	0		ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-SECPEP	A375_MHC_IP_R2	2	621.1666259765625	2	620.767103	1239.51965	-0.65453	-0.00040631	0.27803	0.00017259	-0.37651	-0.00023372	620.7672067469479	46.017	0.75778	46.782	46.453	47.21	0.76518					39	14	4	0	0	0	0.020754	1	17191	17191		110.79	63.044	1	21934000			960	2276	631	640	941	941					-0.09052643149971118
AEFYHQPW	8	Unmodified	_AEFYHQPW_					0	0	0		ENST00000469154.5_1_7:150936191-150937662:-|nuORF;ENST00000470588.1_1_7:150936191-150937494:-|nuORF;ENST00000472789.1_1_7:150936247-150937287:-|nuORF;nc|ENSG00000082014|Q6STE5-2|SMARCD3;ENSG00000082014|ENST00000262188|SMARCD3	ENST00000469154.5_1_7:150936191-150937662:-|nuORF	ENST00000469154.5_1_7:150936191-150937662:-|nuORF	MSMS	A375_MHC_IP_R1	1	539.1710205078125	2	539.243067	1076.47158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.25	1	79.25	78.75	79.75	0								0	0	0	0.16876	1	28927	28927		9.3474	1.4373	1				961	1751	632	641	942	942					-0.06359672279381812
AEGAAGVQGW	10	Unmodified	_AEGAAGVQGW_					0	0	0			REV__ENST00000563893.5_1_16:29872371-29874522:-|nuORF	REV__ENST00000563893.5_1_16:29872371-29874522:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	473.6248779296875	2	473.224874	944.435195	-0.61569	-0.00029136	0.83871	0.0003969	0.22303	0.00010554	473.2249653221121	32.59	0.55897	33.327	33.061	33.62	0.73691					20	10	2	0	0	0	0.57505	1	11656	11656		22.736	4.5899	1	3116900	+		962	26211	633	642	943	943					-0.0392454917609939
AEGADVPFY	9	Unmodified	_AEGADVPFY_					0	0	0			REV__nc|ENSG00000124243|Q8TDM0-2|BCAS4	REV__nc|ENSG00000124243|Q8TDM0-2|BCAS4	MSMS	A375_MHC_IP_R2	2	484.6218566894531	2	484.721633	967.428712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.331	1	45.1	44.6	45.6	0.7691								0	0	0	0.15486	1	16544	16544		12.532	0.89125	1		+		963	18289	634	643	944	944					-0.05630487127473316
AEGAEWLHF	9	Unmodified	_AEGAEWLHF_					0	0	0		ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2	ENSG00000134759|ENST00000358232|ELP2	ENSG00000134759|ENST00000358232|ELP2	MULTI-MSMS	A375_MHC_IP_R1	1	530.6483154296875	2	530.248349	1058.48214	-0.67585	-0.00035837	0.29264	0.00015517	-0.38321	-0.0002032	530.2485302063361	94.309	0.60861	94.309	93.991	94.599	0					18	11	2	0	0	0	0.0094266	1	34657	34657		97.075	58.46	1	2248500			964	4605	635	644	945	945					-0.04475689624973711
AEGAEWLHF	9	Unmodified	_AEGAEWLHF_					0	0	0		ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2	ENSG00000134759|ENST00000358232|ELP2	ENSG00000134759|ENST00000358232|ELP2	MULTI-MSMS	A375_MHC_IP_R2	2	530.6489868164062	2	530.248349	1058.48214	-0.46961	-0.00024901	0.51942	0.00027542	0.049806	2.6409E-05	530.2486167375826	93.592	0.71148	94.337	93.956	94.667	0.74474					21	13	2	0	0	0	0.018481	1	35587	35587		85.357	43.044	1	2438900			965	4605	635	644	946	946					-0.04475689624973711
AEGAGDVAF	9	Unmodified	_AEGAGDVAF_					0	0	0		ENSG00000163975|ENST00000296350|MELTF;nc|ENSG00000163975|P08582-2|MELTF	ENSG00000163975|ENST00000296350|MELTF	ENSG00000163975|ENST00000296350|MELTF	MULTI-SECPEP	A375_MHC_IP_R2	2	836.811279296875	1	836.378474	835.371197	-0.81963	-0.00068552	0.053377	4.4643E-05	-0.76625	-0.00064088	836.37846509986	55.576	0.50629	56.327	56.034	56.54	0.75075					15	9	2	0	0	0	0.14422	1	21045	21045		43.858	5.8843	1	2655100			966	6756	636	645	947	947					-0.05307329333038524
AEGAGDVAF	9	Unmodified	_AEGAGDVAF_					0	0	0		ENSG00000163975|ENST00000296350|MELTF;nc|ENSG00000163975|P08582-2|MELTF	ENSG00000163975|ENST00000296350|MELTF	ENSG00000163975|ENST00000296350|MELTF	MULTI-MATCH	A375_MHC_IP_R1	1		1	836.378474	835.371197	-0.22811	-0.00019079	0.27879	0.00023318	0.050685	4.2392E-05	836.3788006540888	56.307	0.50685	56.307	56.041	56.548	0	-0.0097342	0.00016276	NaN	43.858	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2819500			967	6756	636	645							-0.05307329333038524
AEGAGLHAL	9	Unmodified	_AEGAGLHAL_					0	0	0		ENST00000464048.1_1_1:153914801-153915527:-|nuORF;ENSG00000198837|ENST00000361217|DENND4B	ENST00000464048.1_1_1:153914801-153915527:-|nuORF	ENST00000464048.1_1_1:153914801-153915527:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	420.18438720703125	2	419.72451	837.434466	-0.29924	-0.0001256	0.40932	0.0001718	0.11007	4.6201E-05	419.7245640697132	35.578	0.35421	36.341	36.132	36.486	0.76338					11	6	2	0	0	0	0.40079	1	12848	12848		24.674	6.5389	1	1564600			968	9342	637	646	948	948					0.009246561748454951
AEGAPGAGL	9	Unmodified	_AEGAPGAGL_					0	0	0		PPP1R12C|p.I471Lfs*93|1|0.26|ENSG00000125503|chr19:55095334-55095334|T/-|frameshift_variant;nc|ENSG00000125503|Q9BZL4-5|PPP1R12C;nc|ENSG00000125503|Q9BZL4-2|PPP1R12C;nc|ENSG00000125503|Q9BZL4-3|PPP1R12C;nc|ENSG00000125503|Q9BZL4-4|PPP1R12C;ENSG00000125503|ENST00000263433|PPP1R12C	PPP1R12C|p.I471Lfs*93|1|0.26|ENSG00000125503|chr19:55095334-55095334|T/-|frameshift_variant	PPP1R12C|p.I471Lfs*93|1|0.26|ENSG00000125503|chr19:55095334-55095334|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	741.9735107421875	1	742.372995	741.365718	-1.4002	-0.0010395	0.69646	0.00051704	-0.70372	-0.00052242	742.37343720893	36.729	0.45737	37.5	37.359	37.816	0.7709					13	8	2	0	0	0	0.39388	1	13436	13436		39.957	16.809	1	2657800			969	3970	638	647	949	949					-0.015310081248458118
AEGAPQKEVY	10	Unmodified	_AEGAPQKEVY_					0	0	0		ENSG00000166908|ENST00000354947|PIP4K2C;nc|ENSG00000166908|Q8TBX8-2|PIP4K2C;nc|ENSG00000166908|Q8TBX8-3|PIP4K2C	ENSG00000166908|ENST00000354947|PIP4K2C	ENSG00000166908|ENST00000354947|PIP4K2C	MULTI-MSMS	A375_MHC_IP_R1	1	546.6712036132812	2	546.272021	1090.52949	-0.82762	-0.00045211	-0.061416	-3.355E-05	-0.88904	-0.00048566	546.2718764615066	23.661	0.61124	23.661	23.278	23.889	0					18	11	3	0	0	0	0.0094485	1	6548	6548		108.26	37.93	1	10782000			970	7131	639	648	950	950					-0.012154551446201367
AEGAQPEWAAG	11	Unmodified	_AEGAQPEWAAG_					0	0	0			REV__nc|ENSG00000258834|P0CJ87|DUX4L4	REV__nc|ENSG00000258834|P0CJ87|DUX4L4	MULTI-SECPEP	A375_MHC_IP_R1	1	544.1929321289062	2	543.74617	1085.47779	-0.39267	-0.00021351	-0.59193	-0.00032186	-0.98459	-0.00053537	543.7461704357602	71.51	0.35183	71.51	71.313	71.665	0					11	6	2	0	0	0	0.88538	1	26040	26040		13.042	13.042	1	2395900	+		971	27534	640	649	951	951					-0.06153198838546814
AEGDDRFSESI	11	Unmodified	_AEGDDRFSESI_					0	0	0		nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2;nc|ENSG00000155093|Q92932-3|PTPRN2	nc|ENSG00000155093|Q92932-2|PTPRN2	nc|ENSG00000155093|Q92932-2|PTPRN2	MULTI-SECPEP	A375_MHC_IP_R2	2	408.61627197265625	3	409.182563	1224.52586	-0.54231	-0.0002219	4.158	0.0017014	3.6157	0.0014795	409.5195348010412	37.228	0.45547	37.999	37.716	38.171	0.7709					14	8	3	0	0	0	0.99331	1	13645	13645		0.36667	0	1	2066400			972	6125	641	650	952	952					-0.07742169709149493
AEGDLIEHF	9	Unmodified	_AEGDLIEHF_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	A375_MHC_IP_R1	1	515.6533203125	2	515.745639	1029.47673	-0.14153	-7.2992E-05	-0.024687	-1.2732E-05	-0.16621	-8.5724E-05	515.7455742752082	69.203	0.91275	69.203	68.869	69.782	0					47	17	4	0	0	0	0.0095277	3	25087	25053;25087;25121		108	42.762	1	36262000			973	8108	642	651	953;954;955	954					-0.036834132074318404
AEGDLIEHF	9	Unmodified	_AEGDLIEHF_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	A375_MHC_IP_R2	2	516.1453247070312	2	515.745639	1029.47673	-0.65334	-0.00033696	0.24152	0.00012456	-0.41182	-0.00021239	515.7457109567989	68.505	1.0138	69.24	68.816	69.83	0.73511					56	19	4	0	0	0	0.040308	4	25870	25832;25870;25963;25978		68.081	28.131	1	34643000			974	8108	642	651	956;957;958;959	957					-0.036834132074318404
AEGDLTLYH	9	Unmodified	_AEGDLTLYH_					0	0	0		ENSG00000108592|ENST00000427159|FTSJ3	ENSG00000108592|ENST00000427159|FTSJ3	ENSG00000108592|ENST00000427159|FTSJ3	MULTI-MSMS	A375_MHC_IP_R2	2	509.6890869140625	2	509.745639	1017.47673	-0.55141	-0.00028108	-0.37411	-0.0001907	-0.92552	-0.00047178	509.7454846284903	46.979	0.76233	47.741	47.412	48.174	0.76128					25	14	2	0	0	0	0.034481	1	17602	17602		71.134	40.909	1	2023900			975	2821	643	652	960	960					-0.03131413207427158
AEGDLTLYH	9	Unmodified	_AEGDLTLYH_					0	0	0		ENSG00000108592|ENST00000427159|FTSJ3	ENSG00000108592|ENST00000427159|FTSJ3	ENSG00000108592|ENST00000427159|FTSJ3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	509.745639	1017.47673	-0.27697	-0.00014118	-0.22556	-0.00011498	-0.50253	-0.00025616	509.74553447949205	47.729	0.90842	47.729	47.315	48.223	0	-0.0056225	7.6923E-05	NaN	71.134	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2700100			976	2821	643	652							-0.03131413207427158
AEGEDVGWWRS	11	Unmodified	_AEGEDVGWWRS_					0	0	0		ENST00000533084.1_1_1:32852298-32860015:-|nuORF;nc|ENSG00000160058|Q9NW68-5|BSDC1;nc|ENSG00000160058|Q9NW68-9|BSDC1;nc|ENSG00000160058|Q9NW68-8|BSDC1;nc|ENSG00000160058|Q9NW68-2|BSDC1;ENSG00000160058|ENST00000455895|BSDC1;nc|ENSG00000160058|Q9NW68-7|BSDC1;nc|ENSG00000160058|Q9NW68-3|BSDC1	ENST00000533084.1_1_1:32852298-32860015:-|nuORF	ENST00000533084.1_1_1:32852298-32860015:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	646.6884765625	2	646.288734	1290.56291	-0.31857	-0.00020589	0.2315	0.00014961	-0.087077	-5.6277E-05	646.288910503106	70.825	0.56294	70.825	70.494	71.057	0					24	10	3	0	0	0	0.60848	1	25710	25710		22.658	4.5117	1	5962000			977	6394	644	653	961	961					-0.07074453372729295
AEGEDVGWWRS	11	Unmodified	_AEGEDVGWWRS_					0	0	0		ENST00000533084.1_1_1:32852298-32860015:-|nuORF;nc|ENSG00000160058|Q9NW68-5|BSDC1;nc|ENSG00000160058|Q9NW68-9|BSDC1;nc|ENSG00000160058|Q9NW68-8|BSDC1;nc|ENSG00000160058|Q9NW68-2|BSDC1;ENSG00000160058|ENST00000455895|BSDC1;nc|ENSG00000160058|Q9NW68-7|BSDC1;nc|ENSG00000160058|Q9NW68-3|BSDC1	ENST00000533084.1_1_1:32852298-32860015:-|nuORF	ENST00000533084.1_1_1:32852298-32860015:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	646.6881103515625	2	646.288734	1290.56291	-0.61616	-0.00039822	-0.30596	-0.00019774	-0.92213	-0.00059596	646.2885168973124	70.202	0.50665	70.936	70.693	71.2	0.73421					22	9	3	0	0	0	0.53345	1	26606	26606		28.495	10.348	1	3847200			978	6394	644	653	962	962					-0.07074453372729295
AEGEDVGWWRS	11	Unmodified	_AEGEDVGWWRS_					0	0	0		ENST00000533084.1_1_1:32852298-32860015:-|nuORF;nc|ENSG00000160058|Q9NW68-5|BSDC1;nc|ENSG00000160058|Q9NW68-9|BSDC1;nc|ENSG00000160058|Q9NW68-8|BSDC1;nc|ENSG00000160058|Q9NW68-2|BSDC1;ENSG00000160058|ENST00000455895|BSDC1;nc|ENSG00000160058|Q9NW68-7|BSDC1;nc|ENSG00000160058|Q9NW68-3|BSDC1	ENST00000533084.1_1_1:32852298-32860015:-|nuORF	ENST00000533084.1_1_1:32852298-32860015:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	646.288734	1290.56291	-0.31857	-0.00020589	0.2315	0.00014961	-0.087077	-5.6277E-05	646.288910503106	70.825	0.56294	70.825	70.494	71.057	0	-0.055873	0.00028943	NaN	28.495	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5962000			979	6394	644	653							-0.07074453372729295
AEGEDVGWWRS	11	Unmodified	_AEGEDVGWWRS_					0	0	0		ENST00000533084.1_1_1:32852298-32860015:-|nuORF;nc|ENSG00000160058|Q9NW68-5|BSDC1;nc|ENSG00000160058|Q9NW68-9|BSDC1;nc|ENSG00000160058|Q9NW68-8|BSDC1;nc|ENSG00000160058|Q9NW68-2|BSDC1;ENSG00000160058|ENST00000455895|BSDC1;nc|ENSG00000160058|Q9NW68-7|BSDC1;nc|ENSG00000160058|Q9NW68-3|BSDC1	ENST00000533084.1_1_1:32852298-32860015:-|nuORF	ENST00000533084.1_1_1:32852298-32860015:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	646.288734	1290.56291	-0.61616	-0.00039822	-0.30596	-0.00019774	-0.92213	-0.00059596	646.2885168973124	70.202	0.50665	70.936	70.693	71.2	0.73421	0.055873	-0.00040528	NaN	28.495	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3847200			980	6394	644	653							-0.07074453372729295
AEGEINNVQW	10	Unmodified	_AEGEINNVQW_					0	0	0		ENSG00000136485|ENST00000614556|DCAF7;nc|ENSG00000136485|P61962-2|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	MULTI-MSMS	A375_MHC_IP_R1	1	580.67236328125	2	580.272552	1158.53055	-0.20302	-0.00011781	0.32289	0.00018736	0.11987	6.9559E-05	580.7740570666989	75.279	0.70536	75.279	74.958	75.664	0					26	13	3	0	0	0	0.0085747	1	27398	27398		106.94	57.007	1	4552900			981	4793	645	654	963	963					-0.042372407757284236
AEGEINNVQW	10	Unmodified	_AEGEINNVQW_					0	0	0		ENSG00000136485|ENST00000614556|DCAF7;nc|ENSG00000136485|P61962-2|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	MULTI-SECPEP	A375_MHC_IP_R2	2	580.6723022460938	2	580.272552	1158.53055	-0.35077	-0.00020354	-0.2394	-0.00013892	-0.59017	-0.00034246	580.2725684292732	74.646	0.76197	75.384	75.06	75.822	0.73751					27	14	3	0	0	0	0.033119	1	28306	28306		99.755	41.076	1	4207800			982	4793	645	654	964	964					-0.042372407757284236
AEGEPRYAL	9	Unmodified	_AEGEPRYAL_					0	0	0		nc|ENSG00000139637|Q9HB07|MYG1;ENSG00000139637|ENST00000267103|MYG1	nc|ENSG00000139637|Q9HB07|MYG1	nc|ENSG00000139637|Q9HB07|MYG1	MULTI-SECPEP	A375_MHC_IP_R1	1	503.65350341796875	2	503.253631	1004.49271	-0.047316	-2.3812E-05	-0.19383	-9.7543E-05	-0.24114	-0.00012136	503.2534867087025	38.952	1.2725	38.952	38.218	39.491	0					63	24	4	0	0	0	0.13208	1	13228	13228		41.956	12.874	1	20763000			983	5097	646	655	965	965					-0.009357069705288268
AEGEPRYAL	9	Unmodified	_AEGEPRYAL_					0	0	0		nc|ENSG00000139637|Q9HB07|MYG1;ENSG00000139637|ENST00000267103|MYG1	nc|ENSG00000139637|Q9HB07|MYG1	nc|ENSG00000139637|Q9HB07|MYG1	MULTI-SECPEP	A375_MHC_IP_R2	2	503.681640625	2	503.253631	1004.49271	-0.95365	-0.00047993	0.20799	0.00010467	-0.74566	-0.00037525	503.2537228414936	38.19	1.2256	38.965	38.432	39.658	0.77451					55	23	4	0	0	0	0.13208	1	14014	14014		49.554	20.473	1	22759000			984	5097	646	655	966	966					-0.009357069705288268
AEGGFAFVY	9	Unmodified	_AEGGFAFVY_					0	0	0		ENSG00000178950|ENST00000314167|GAK;ENST00000513935.1_1_4:906456-925975:-|nuORF	ENSG00000178950|ENST00000314167|GAK	ENSG00000178950|ENST00000314167|GAK	MULTI-SECPEP	A375_MHC_IP_R2	2	959.894775390625	1	960.44616	959.438883	0.040492	3.889E-05	-0.54398	-0.00052246	-0.50349	-0.00048357	960.4459249051495	110.06	0.56351	110.79	110.58	111.14	0.73692					18	10	2	0	0	0	0.43707	1	41612	41612		36.044	9.7029	1	3051100			985	8189	647	656	967	967					-0.04245879402242281
AEGGGGSECPC	11	Unmodified	_AEGGGGSECPC_					0	0	0			REV__nc|ENSG00000006118|Q24JP5-4|TMEM132A	REV__nc|ENSG00000006118|Q24JP5-4|TMEM132A	MSMS	A375_MHC_IP_R2	2	483.65765380859375	2	483.668217	965.321881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.558	1	65.298	64.798	65.798	0.74022								0	0	0	0.16302	1	24476	24476		2.9952	0.10602	1		+		986	16132	648	657	968	968					-0.1621672867581765
AEGGPAPGL	9	Unmodified	_AEGGPAPGL_					0	0	0		ENST00000521825.1_1_8:143353010-143361338:-|nuORF	ENST00000521825.1_1_8:143353010-143361338:-|nuORF	ENST00000521825.1_1_8:143353010-143361338:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	768.2630615234375	1	768.388645	767.381368	-0.49493	-0.0003803	0.37636	0.00028919	-0.11857	-9.1105E-05	768.3888619229846	43.884	0.50867	43.884	43.553	44.061	0					16	9	2	0	0	0	0.3243	1	15347	15347		36.044	5.8194	1	3373900			987	13015	649	658	969	969					-0.011627216078068159
AEGGPAPGL	9	Unmodified	_AEGGPAPGL_					0	0	0		ENST00000521825.1_1_8:143353010-143361338:-|nuORF	ENST00000521825.1_1_8:143353010-143361338:-|nuORF	ENST00000521825.1_1_8:143353010-143361338:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	768.388645	767.381368	-0.82269	-0.00063214	-0.1372	-0.00010542	-0.95988	-0.00073756	768.388429726806	43.116	0.50636	43.888	43.573	44.079	0.7724	0.0020893	-0.0001788	NaN	36.044	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2428100			988	13015	649	658							-0.011627216078068159
AEGGSTSSTLR	11	Unmodified	_AEGGSTSSTLR_					0	0	0		ENSG00000125651|ENST00000394456|GTF2F1;ENST00000594213.5_1_19:6380485-6381059:-|nuORF	ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	MULTI-SECPEP	A375_MHC_IP_R1	1	532.6551513671875	2	533.262185	1064.50982	-0.47622	-0.00025395	-2.0614	-0.0010993	-2.5377	-0.0013532	534.2666098024506	106.48	0.46173	106.48	106.16	106.62	0					15	8	3	0	0	0	0.92455	1	39112	39112		7.609	0	1	4601900			989	3976	650	659	970	970					-0.019858311553889507
AEGGYPLRF	9	Unmodified	_AEGGYPLRF_					0	0	0		ENSG00000081386|ENST00000223428|ZNF510	ENSG00000081386|ENST00000223428|ZNF510	ENSG00000081386|ENST00000223428|ZNF510	MULTI-MSMS	A375_MHC_IP_R1	1	505.6585693359375	2	505.258717	1008.50288	-0.53164	-0.00026861	0.51178	0.00025858	-0.019857	-1.0033E-05	505.25890678099574	66.052	0.91415	66.052	65.514	66.428	0					38	17	3	0	0	0	0.050868	1	23863	23863		63.961	29.858	1	18926000			990	1738	651	660	971	971					-0.0010309924527973635
AEGGYPLRF	9	Unmodified	_AEGGYPLRF_					0	0	0		ENSG00000081386|ENST00000223428|ZNF510	ENSG00000081386|ENST00000223428|ZNF510	ENSG00000081386|ENST00000223428|ZNF510	MULTI-SECPEP	A375_MHC_IP_R2	2	505.177001953125	2	505.258717	1008.50288	-0.78371	-0.00039597	0.15637	7.9007E-05	-0.62734	-0.00031697	505.2587202365727	65.2	1.0163	65.938	65.308	66.324	0.73811					46	19	4	0	0	0	0.03109	1	24706	24706		82.529	53.448	1	18032000			991	1738	651	660	972	972					-0.0010309924527973635
AEGHPAPQI	9	Unmodified	_AEGHPAPQI_					0	0	0		ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	MULTI-MSMS	A375_MHC_IP_R1	1	460.635009765625	2	460.235242	918.45593	-0.56086	-0.00025813	0.0495	2.2782E-05	-0.51136	-0.00023535	460.2352150425924	26.564	0.50445	26.564	26.423	26.928	0					13	9	2	0	0	0	0.11629	1	7954	7954		47.749	23.728	1	3458100			992	9331	652	661	973	973					-0.006559587964375169
AEGHPAPQI	9	Unmodified	_AEGHPAPQI_					0	0	0		ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	MULTI-MSMS	A375_MHC_IP_R2	2	460.635009765625	2	460.235242	918.45593	-0.85076	-0.00039155	0.62612	0.00028816	-0.22464	-0.00010339	460.23556329819866	25.952	0.45755	26.612	26.5	26.957	0.65992					11	8	2	0	0	0	0.14922	1	8769	8769		41.84	22.583	1	2336300			993	9331	652	661	974	974					-0.006559587964375169
AEGHYTVSY	9	Unmodified	_AEGHYTVSY_					0	0	0		ENSG00000133104|ENST00000438666|SPART;ENST00000495510.1_1_13:36900679-36920374:-|nuORF	ENSG00000133104|ENST00000438666|SPART	ENSG00000133104|ENST00000438666|SPART	MULTI-MSMS	A375_MHC_IP_R1	1	513.6668090820312	2	513.729989	1025.44543	-0.74824	-0.00038439	-0.0067234	-3.454E-06	-0.75496	-0.00038785	513.7299506993224	32.627	0.40278	32.627	32.434	32.836	0					13	7	2	0	0	0	0.077132	2	10555	10555;10605		54.774	16.809	1	3664400			994	4486	653	662	975;976	975					-0.06627986241505823
AEGHYTVSY	9	Unmodified	_AEGHYTVSY_					0	0	0		ENSG00000133104|ENST00000438666|SPART;ENST00000495510.1_1_13:36900679-36920374:-|nuORF	ENSG00000133104|ENST00000438666|SPART	ENSG00000133104|ENST00000438666|SPART	MULTI-MSMS	A375_MHC_IP_R2	2	514.1298217773438	2	513.729989	1025.44543	-0.768	-0.00039454	0.24805	0.00012743	-0.51995	-0.00026711	513.7301167874917	31.943	0.40467	32.679	32.453	32.857	0.73691					13	7	2	0	0	0	0.040308	2	11336	11336;11355		68.081	25.986	1	3811500			995	4486	653	662	977;978	977					-0.06627986241505823
AEGIDKKELL	10	Unmodified	_AEGIDKKELL_					0	0	0			REV__tr|U7SQR6|U7SQR6_FUSNULipopolysaccharideN-acetylglucosaminyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01764PE=4SV=1	REV__tr|U7SQR6|U7SQR6_FUSNULipopolysaccharideN-acetylglucosaminyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01764PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	558.7195434570312	2	558.318971	1114.62339	-0.70981	-0.0003963	-0.91344	-0.00050999	-1.6233	-0.00090629	558.3182390392294	76.026	0.40466	76.767	76.538	76.943	0.74052					12	7	2	0	0	0	0.58856	1	28897	28897		28.495	1.2713	1	1816600	+		996	28378	654	663	979	979					0.0706626395767671
AEGIDKKELL	10	Unmodified	_AEGIDKKELL_					0	0	0			REV__tr|U7SQR6|U7SQR6_FUSNULipopolysaccharideN-acetylglucosaminyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01764PE=4SV=1	REV__tr|U7SQR6|U7SQR6_FUSNULipopolysaccharideN-acetylglucosaminyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01764PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	558.318971	1114.62339	-0.61131	-0.00034131	-0.97342	-0.00054348	-1.5847	-0.00088479	558.3183443857197	76.872	0.3591	76.872	76.673	77.032	0	0.05241	-9.102E-06	NaN	28.495	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1202600	+		997	28378	654	663							0.0706626395767671
AEGIGGERY	9	Unmodified	_AEGIGGERY_					0	0	0			REV__ENSG00000151005|ENST00000280605|TKTL2	REV__ENSG00000151005|ENST00000280605|TKTL2	MSMS	A375_MHC_IP_R2	2	476.25994873046875	2	476.230156	950.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.431	1	35.183	34.683	35.683	0.75225								0	0	0	0.15273	1	12419	12419		17.113	1.2657	1		+		998	19735	655	664	980	980					-0.031445665216665475
AEGIHTGQF	9	Unmodified	_AEGIHTGQF_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-SECPEP	A375_MHC_IP_R1	1	480.8936462402344	2	480.232699	958.450845	-0.35298	-0.00016951	-0.13248	-6.3622E-05	-0.48546	-0.00023313	480.2325615467629	33.673	1.0632	33.673	33.04	34.103	0					52	20	4	0	0	0	0.010853	1	11034	11034		152.89	104.54	1	47956000			999	6459	656	665	981	981					-0.030042626590443433
AEGIHTGQF	9	Unmodified	_AEGIHTGQF_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-SECPEP	A375_MHC_IP_R2	2	480.63226318359375	2	480.232699	958.450845	-0.64602	-0.00031024	-0.11565	-5.5539E-05	-0.76167	-0.00036578	480.2325439118886	32.944	1.0692	33.68	33.061	34.13	0.73692					52	20	5	0	0	0	0.022401	1	11731	11731		110.67	60.742	1	41146000			1000	6459	656	665	982	982					-0.030042626590443433
AEGIHTGQF	9	Unmodified	_AEGIHTGQF_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-SECPEP	A375_MHC_IP_R2	2	960.0385131835938	1	959.458121	958.450845	-0.19893	-0.00019087	-0.035875	-3.4421E-05	-0.23481	-0.00022529	959.4580854948548	32.96	0.30608	33.696	33.518	33.825	0.73692					9	5	2	0	0	0	0.77003	1	11762	11762		11.495	11.495	1	1652000			1001	6459	656	665	983	983					-0.030042626590443433
AEGIHTGQF	9	Unmodified	_AEGIHTGQF_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MATCH	A375_MHC_IP_R1	1		1	959.458121	958.450845	0.14463	0.00013876	-0.33432	-0.00032077	-0.1897	-0.00018201	959.457678142173	33.693	0.30188	33.693	33.496	33.798	0	-0.0017794	-0.00011806	NaN	11.495	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1457500			1002	6459	656	665							-0.030042626590443433
AEGIHTGQFVY	11	Unmodified	_AEGIHTGQFVY_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	A375_MHC_IP_R1	1	611.698486328125	2	611.29857	1220.58259	-0.34043	-0.00020811	-0.016739	-1.0232E-05	-0.35717	-0.00021834	611.2986185817628	57.737	0.71067	57.737	57.364	58.075	0					32	13	4	0	0	0	0.13939	1	20732	20732		63.227	25.052	1	9211800			1003	6459	657	666	984	984					-0.018880773619457614
AEGIHTGQFVY	11	Unmodified	_AEGIHTGQFVY_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	A375_MHC_IP_R2	2	611.6981811523438	2	611.29857	1220.58259	-0.92325	-0.00056438	-0.25948	-0.00015862	-1.1827	-0.000723	611.2985859932569	57.036	1.1221	57.786	56.948	58.07	0.75014					46	21	4	0	0	0	0.090348	1	21547	21547		71.708	40.44	1	8840600			1004	6459	657	666	985	985					-0.018880773619457614
AEGILTVPVGY	11	Unmodified	_AEGILTVPVGY_					0	0	0			REV__nc|ENSG00000142657|P52209-2|PGD	REV__nc|ENSG00000142657|P52209-2|PGD	MULTI-MSMS	A375_MHC_IP_R2	2	373.5890808105469	3	373.541252	1117.60193	0.55932	0.00020893	2.8189	0.001053	3.3782	0.0012619	373.8754237504246	43.603	1.0101	44.374	43.825	44.835	0.77127					29	19	2	0	0	0	0.73016	1	16197	16197		4.4062	0	1	2011000	+		1005	19317	658	667	986	986					0.047828789289496854
AEGIPAHVI	9	Unmodified	_AEGIPAHVI_					0	0	0		nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX;ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX;nc|ENSG00000088826|Q9NWM0-5|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	MULTI-MSMS	A375_MHC_IP_R1	1	454.2877502441406	2	453.75581	905.497067	-0.27346	-0.00012409	-0.04798	-2.1771E-05	-0.32144	-0.00014586	453.75578561883935	52.511	0.60925	52.511	52.186	52.796	0					25	11	3	0	0	0	0.083809	1	18625	18625		53.576	9.1686	1	15119000			1006	1898	659	668	987	987					0.04053802243049631
AEGIPAHVI	9	Unmodified	_AEGIPAHVI_					0	0	0		nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX;ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX;nc|ENSG00000088826|Q9NWM0-5|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	MULTI-MSMS	A375_MHC_IP_R2	2	454.2877197265625	2	453.75581	905.497067	-0.49083	-0.00022272	-0.19826	-8.9964E-05	-0.6891	-0.00031268	453.75571991629045	51.696	0.61024	52.448	52.118	52.729	0.75225					25	11	3	0	0	0	0.3054	1	19376	19376		30.225	7.0764	1	12086000			1007	1898	659	668	988	988					0.04053802243049631
AEGKFWTHW	9	Unmodified	_AEGKFWTHW_					0	0	0		ENSG00000104897|ENST00000221494|SF3A2	ENSG00000104897|ENST00000221494|SF3A2	ENSG00000104897|ENST00000221494|SF3A2	MULTI-SECPEP	A375_MHC_IP_R1	1	388.25396728515625	3	387.854053	1160.54033	0.17175	6.6614E-05	-0.078089	-3.0287E-05	0.093661	3.6327E-05	387.85393443755333	61.253	0.51066	61.253	61.024	61.534	0					19	9	3	0	0	0	0.56537	1	22106	22106		33.445	21.204	1	3259900			1008	2552	660	669	989	989					-0.03352007979674454
AEGKFWTHW	9	Unmodified	_AEGKFWTHW_					0	0	0		ENSG00000104897|ENST00000221494|SF3A2	ENSG00000104897|ENST00000221494|SF3A2	ENSG00000104897|ENST00000221494|SF3A2	MULTI-SECPEP	A375_MHC_IP_R2	2	388.2538757324219	3	387.854053	1160.54033	-0.44514	-0.00017265	0.22164	8.5964E-05	-0.2235	-8.6687E-05	388.1885737612124	60.467	0.61182	61.212	60.903	61.515	0.74503					18	11	2	0	0	0	0.50702	1	22922	22922		23.79	21.055	1	2343100			1009	2552	660	669	990	990					-0.03352007979674454
AEGKKNENLQ	10	Unmodified	_AEGKKNENLQ_					0	0	0		nc|ENSG00000125454|Q9HC21-2|SLC25A19;ENSG00000125454|ENST00000416858|SLC25A19	nc|ENSG00000125454|Q9HC21-2|SLC25A19	nc|ENSG00000125454|Q9HC21-2|SLC25A19	MULTI-SECPEP	A375_MHC_IP_R1	1	378.25634765625	3	377.531527	1129.57275	0.051476	1.9434E-05	2.6164	0.00098776	2.6678	0.0010072	377.532393135178	23.698	0.40657	23.698	23.584	23.991	0					9	7	2	0	0	0	0.62001	1	6633	6633		14.838	4.6873	1	3545300			1010	3965	661	670	991	991					0.013147346326604747
AEGKLISVEY	10	Unmodified	_AEGKLISVEY_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L;nc|ENSG00000177409|Q8IVG5-2|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-SECPEP	A375_MHC_IP_R1	1	555.1976318359375	2	554.797872	1107.58119	-0.61174	-0.00033939	1.3226	0.00073375	0.71081	0.00039436	554.7980415715763	58.869	0.96663	58.869	58.43	59.397	0					30	18	2	0	0	0	0.62001	1	21207	21207		40.239	19.825	1	1573700			1011	8080	662	671	992	992					0.0317028854929049
AEGLGVAVY	9	Unmodified	_AEGLGVAVY_					0	0	0		nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12	nc|ENSG00000161091|Q6NUT3-2|MFSD12	nc|ENSG00000161091|Q6NUT3-2|MFSD12	MULTI-MSMS	A375_MHC_IP_R2	2	878.8616943359375	1	878.46181	877.454533	-0.47034	-0.00041317	0.085656	7.5246E-05	-0.38468	-0.00033793	878.4617704720729	78.652	0.91283	79.396	79.084	79.997	0.74473					40	17	3	0	0	0	0.077132	1	29972	29972		54.774	10.367	1	35629000			1012	6465	663	672	993	993					0.010904071148047478
AEGLGVAVY	9	Unmodified	_AEGLGVAVY_					0	0	0		nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12	nc|ENSG00000161091|Q6NUT3-2|MFSD12	nc|ENSG00000161091|Q6NUT3-2|MFSD12	MULTI-MATCH	A375_MHC_IP_R1	1		1	878.46181	877.454533	-0.1988	-0.00017464	0.15896	0.00013964	-0.039845	-3.5002E-05	878.4618119237991	79.408	0.92213	79.408	79.061	79.983	0	0.0058591	3.4528E-05	NaN	54.774	44	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34889000			1013	6465	663	672							0.010904071148047478
AEGLPKKF	8	Unmodified	_AEGLPKKF_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	A375_MHC_IP_R1	1	445.66058349609375	2	445.260728	888.506903	-0.21746	-9.6826E-05	-0.49797	-0.00022173	-0.71543	-0.00031855	445.26057642436206	27.102	0.5029	27.102	26.878	27.381	0					15	9	2	0	0	0	0.73946	1	8190	8190		23.148	9.6405	1	4057500			1014	7831	664	673	994	994					0.05818990248417322
AEGLTAPAEV	10	Unmodified	_AEGLTAPAEV_					0	0	0			REV__ENST00000339686.7_1_19:35996627-36002696:-|nuORF	REV__ENST00000339686.7_1_19:35996627-36002696:-|nuORF	MSMS	A375_MHC_IP_R1	1	479.1794128417969	2	479.248015	956.481476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.914	1	62.914	62.414	63.414	0								0	0	0	0.14925	1	22730	22730		19.257	0	1		+		1015	23714	665	674	995	995					0.001494709353323742
AEGMERTQL	9	Unmodified	_AEGMERTQL_					0	0	0			REV__ENSG00000073910|ENST00000542859|FRY	REV__ENSG00000073910|ENST00000542859|FRY	MULTI-MSMS	A375_MHC_IP_R2	2	517.6875	2	517.750398	1033.48624	-0.73502	-0.00038056	0.53069	0.00027476	-0.20433	-0.00010579	517.750544707053	67.342	0.60938	68.078	67.75	68.359	0.73631					22	11	3	0	0	0	0.61998	1	25453	25453		13.906	0	1	2850800	+		1016	16626	666	675	996	996					-0.029159681935425397
AEGPCCENC	9	Unmodified	_AEGPCCENC_					0	0	0		nc|ENSG00000104755|Q99965-2|ADAM2;ADAM2|p.W716Mfs*4|1|0.43|ENSG00000104755|chr8:39746500-39746501|-/T|frameshift_variant;ENSG00000104755|ENST00000265708|ADAM2	nc|ENSG00000104755|Q99965-2|ADAM2	nc|ENSG00000104755|Q99965-2|ADAM2	MSMS	A375_MHC_IP_R2	2	463.150390625	2	463.146063	924.277573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.908	1	57.659	57.159	58.159	0.75015								0	0	0	0.15486	1	21514	21514		4.3292	1.44	1				1017	46	667	676	997	997					-0.1875945609365317
AEGPEAERL	9	Unmodified	_AEGPEAERL_					0	0	0		nc|ENSG00000184363|Q9Y446-2|PKP3;ENSG00000184363|ENST00000331563|PKP3;ENST00000533069.1_1_11:394244-396720:+|nuORF	nc|ENSG00000184363|Q9Y446-2|PKP3	nc|ENSG00000184363|Q9Y446-2|PKP3	MULTI-MSMS	A375_MHC_IP_R1	1	486.64300537109375	2	486.243264	970.471974	-0.333	-0.00016192	-0.16557	-8.0509E-05	-0.49857	-0.00024243	486.2431371568186	27.503	0.65664	27.503	27.28	27.937	0					29	12	3	0	0	0	0.0096822	1	8328	8328		110.55	54.376	1	19320000			1018	8576	668	677	998	998					-0.01444297350190027
AEGPEAERL	9	Unmodified	_AEGPEAERL_					0	0	0		nc|ENSG00000184363|Q9Y446-2|PKP3;ENSG00000184363|ENST00000331563|PKP3;ENST00000533069.1_1_11:394244-396720:+|nuORF	nc|ENSG00000184363|Q9Y446-2|PKP3	nc|ENSG00000184363|Q9Y446-2|PKP3	MULTI-MSMS	A375_MHC_IP_R2	2	486.6427307128906	2	486.243264	970.471974	-0.78825	-0.00038328	0.31447	0.00015291	-0.47378	-0.00023037	486.24339130195204	26.915	0.61421	27.575	27.363	27.977	0.65992					31	11	4	0	0	0	0.0037351	1	9119	9119		137.42	64.456	1	16979000			1019	8576	668	677	999	999					-0.01444297350190027
AEGPNRLLY	9	Unmodified	_AEGPNRLLY_					0	0	0		ENST00000563748.5_1_15:34651330-34651973:-|nuORF;ENSG00000176454|ENST00000314891|LPCAT4	ENST00000563748.5_1_15:34651330-34651973:-|nuORF	ENST00000563748.5_1_15:34651330-34651973:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	516.6847534179688	2	516.777274	1031.53999	-0.14993	-7.7481E-05	-0.35539	-0.00018366	-0.50532	-0.00026114	516.77712828264	48.477	1.0638	48.477	47.97	49.033	0					28	17	2	0	0	0	0.13845	1	17027	17027		43.772	24.515	1	20250000			1020	8023	669	678	1000	1000					0.025485723004976535
AEGPNRLLY	9	Unmodified	_AEGPNRLLY_					0	0	0		ENST00000563748.5_1_15:34651330-34651973:-|nuORF;ENSG00000176454|ENST00000314891|LPCAT4	ENST00000563748.5_1_15:34651330-34651973:-|nuORF	ENST00000563748.5_1_15:34651330-34651973:-|nuORF	MSMS	A375_MHC_IP_R2	2	516.6847534179688	2	516.777274	1031.53999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.432	1	48.194	47.694	48.694	0.76128								0	0	0	0.040269	1	17785	17785		57.722	33.701	1				1021	8023	669	678	1001	1001					0.025485723004976535
AEGPPIVTL	9	Unmodified	_AEGPPIVTL_					0	0	0		ENSG00000095321|ENST00000318080|CRAT;nc|ENSG00000095321|P43155-2|CRAT	ENSG00000095321|ENST00000318080|CRAT	ENSG00000095321|ENST00000318080|CRAT	MULTI-MSMS	A375_MHC_IP_R2	2	896.9095458984375	1	896.50876	895.501483	-0.23744	-0.00021287	0.13183	0.00011818	-0.10561	-9.4684E-05	896.508978462991	94.218	0.45599	94.963	94.818	95.274	0.74473					14	8	2	0	0	0	0.35581	1	35918	35918		26.884	8.7487	1	2274800			1022	2040	670	679	1002	1002					0.049552666659678835
AEGPPIVTL	9	Unmodified	_AEGPPIVTL_					0	0	0		ENSG00000095321|ENST00000318080|CRAT;nc|ENSG00000095321|P43155-2|CRAT	ENSG00000095321|ENST00000318080|CRAT	ENSG00000095321|ENST00000318080|CRAT	MULTI-MATCH	A375_MHC_IP_R1	1		1	896.50876	895.501483	-0.31301	-0.00028061	0.19412	0.00017403	-0.11889	-0.00010658	896.5088025983613	95.084	0.51052	95.084	94.853	95.364	0	0.06058	2.5356E-05	NaN	26.884	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2789500			1023	2040	670	679							0.049552666659678835
AEGPPRLAI	9	Unmodified	_AEGPPRLAI_					0	0	0		ENSG00000089693|ENST00000203630|MLF2	ENSG00000089693|ENST00000203630|MLF2	ENSG00000089693|ENST00000203630|MLF2	MULTI-MSMS	A375_MHC_IP_R1	1	462.6687316894531	2	462.269084	922.523616	-0.2007	-9.2778E-05	0.0069664	3.2204E-06	-0.19373	-8.9557E-05	462.26911473854767	57.237	2.7468	57.237	56.65	59.397	0					111	53	5	0	0	0	0.0090297	1	20468	20468		99.755	34.52	1	393160000			1024	1933	671	680	1003	1003					0.059254911343600725
AEGPPRLAI	9	Unmodified	_AEGPPRLAI_					0	0	0		ENSG00000089693|ENST00000203630|MLF2	ENSG00000089693|ENST00000203630|MLF2	ENSG00000089693|ENST00000203630|MLF2	MULTI-MSMS	A375_MHC_IP_R2	2	462.6687927246094	2	462.269084	922.523616	-0.8511	-0.00039344	0.29584	0.00013676	-0.55527	-0.00025668	462.26924082018627	56.376	2.3919	57.126	56.438	58.83	0.75015					115	46	5	0	0	0	0.0090297	1	21237	21237		99.755	34.52	1	479730000			1025	1933	671	680	1004	1004					0.059254911343600725
AEGPSDTKQF	10	Unmodified	_AEGPSDTKQF_					0	0	0		ENSG00000101493|ENST00000443185|ZNF516	ENSG00000101493|ENST00000443185|ZNF516	ENSG00000101493|ENST00000443185|ZNF516	MULTI-MSMS	A375_MHC_IP_R1	1	540.6533813476562	2	540.253828	1078.4931	-0.72503	-0.0003917	0.016469	8.8977E-06	-0.70856	-0.0003828	540.2539098904599	24.673	0.45508	24.673	24.498	24.953	0					12	8	2	0	0	0	2.7733E-05	2	7064	7013;7064		159.1	101.38	1	11648000			1026	2305	672	681	1005;1006	1006					-0.04300332041339061
AEGPSDTKQF	10	Unmodified	_AEGPSDTKQF_					0	0	0		ENSG00000101493|ENST00000443185|ZNF516	ENSG00000101493|ENST00000443185|ZNF516	ENSG00000101493|ENST00000443185|ZNF516	MSMS	A375_MHC_IP_R2	2	540.1632080078125	2	540.253828	1078.4931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.381	1	25.024	24.524	25.524	0.64368								0	0	0	0.12623	1	7999	7999		36.506	13.77	1				1027	2305	672	681	1007	1007					-0.04300332041339061
AEGPSREETW	10	Unmodified	_AEGPSREETW_					0	0	0		ENSG00000143412|ENST00000368947|ANXA9	ENSG00000143412|ENST00000368947|ANXA9	ENSG00000143412|ENST00000368947|ANXA9	MULTI-MSMS	A375_MHC_IP_R2	2	581.6614379882812	2	581.262185	1160.50982	-0.83382	-0.00048467	0.27896	0.00016215	-0.55487	-0.00032252	581.2622426085867	29.599	0.90995	30.297	30.134	31.044	0.69872					21	17	2	0	0	0	0.65106	1	10363	10363		24.991	24.991	1	3166000			1028	5386	673	682	1008	1008					-0.06401831155380933
AEGPSREETW	10	Unmodified	_AEGPSREETW_					0	0	0		ENSG00000143412|ENST00000368947|ANXA9	ENSG00000143412|ENST00000368947|ANXA9	ENSG00000143412|ENST00000368947|ANXA9	MULTI-MATCH	A375_MHC_IP_R1	1		2	581.262185	1160.50982	-0.55443	-0.00032227	0.24204	0.00014069	-0.3124	-0.00018158	581.7637052502637	30.233	0.4032	30.233	30.049	30.453	0	-0.032196	-2.0359E-05	NaN	24.991	12	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3905100			1029	5386	673	682							-0.06401831155380933
AEGPVAVVV	9	Unmodified	_AEGPVAVVV_					0	0	0		nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-4|ZNF598;ENST00000565396.5_1_16:2048964-2050409:-|nuORF;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598	nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598	nc|ENSG00000167962|Q86UK7-2|ZNF598	MULTI-MSMS	A375_MHC_IP_R2	2	840.8824462890625	1	840.482545	839.475269	-0.72609	-0.00061026	-0.30501	-0.00025636	-1.0311	-0.00086662	840.4822755120209	77.174	0.5584	77.917	77.657	78.216	0.74293					17	10	2	0	0	0	0.026461	1	29279	29279		77.984	33.577	1	4228600			1030	14751;7239	674	683	1009	1009					0.04910997494482672
AEGPVAVVV	9	Unmodified	_AEGPVAVVV_					0	0	0		nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-4|ZNF598;ENST00000565396.5_1_16:2048964-2050409:-|nuORF;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598	nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598	nc|ENSG00000167962|Q86UK7-2|ZNF598	MULTI-MATCH	A375_MHC_IP_R1	1		1	840.482545	839.475269	-0.25305	-0.00021269	-0.29591	-0.00024871	-0.54896	-0.00046139	840.4823203586249	78.073	0.50911	78.073	77.742	78.251	0	0.078056	2.6046E-06	NaN	77.984	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5525000			1031	14751;7239	674	683							0.04910997494482672
AEGPVVEKI	9	Unmodified	_AEGPVVEKI_					0	0	0		CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7;nc|ENSG00000171316|Q9P2D1-2|CHD7;nc|ENSG00000171316|Q9P2D1-3|CHD7	CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant	CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	471.6685485839844	2	471.26875	940.522947	-0.30261	-0.00014261	0.1793	8.4501E-05	-0.12331	-5.8111E-05	471.26872992336865	39.319	0.50756	39.319	39.085	39.592	0					25	9	4	0	0	0	0.014789	1	13410	13410		90.135	40.202	1	10115000			1032	387	675	684	1010	1010					0.0503065169467618
AEGPVVEKI	9	Unmodified	_AEGPVVEKI_					0	0	0		CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7;nc|ENSG00000171316|Q9P2D1-2|CHD7;nc|ENSG00000171316|Q9P2D1-3|CHD7	CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant	CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	471.6684265136719	2	471.26875	940.522947	-0.9712	-0.00045769	0.66062	0.00031133	-0.31058	-0.00014636	471.26880234294765	38.492	0.5078	39.267	38.997	39.504	0.77451					29	9	5	0	0	0	0.033808	1	14155	14155		71.708	27.85	1	10315000			1033	387	675	684	1011	1011					0.0503065169467618
AEGQSPLSQKY	11	Unmodified	_AEGQSPLSQKY_					0	0	0		ENST00000520874.1_1_8:108995475-108995910:+|nuORF;NRBF2|p.R193Gfs*7|1|0.38|ENSG00000148572|chr10:63153930-63153930|A/-|frameshift_variant;ENST00000432731.2_1_1:111390701-111391313:-|nuORF;nc|ENSG00000148572|Q96F24-3|NRBF2;ENSG00000148572|ENST00000277746|NRBF2	ENST00000520874.1_1_8:108995475-108995910:+|nuORF	ENST00000520874.1_1_8:108995475-108995910:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	603.700927734375	2	604.30131	1206.58807	-0.29889	-0.00018062	0.71036	0.00042927	0.41147	0.00024865	604.3016781676747	31.578	0.8134	31.578	31.262	32.075	0					16	10	2	0	0	0	0.00037325	1	10120	10120		112.95	79.501	1	3460400			1034	5751	676	685	1012	1012					-0.006963985701304409
AEGQSPLSQKY	11	Unmodified	_AEGQSPLSQKY_					0	0	0		ENST00000520874.1_1_8:108995475-108995910:+|nuORF;NRBF2|p.R193Gfs*7|1|0.38|ENSG00000148572|chr10:63153930-63153930|A/-|frameshift_variant;ENST00000432731.2_1_1:111390701-111391313:-|nuORF;nc|ENSG00000148572|Q96F24-3|NRBF2;ENSG00000148572|ENST00000277746|NRBF2	ENST00000520874.1_1_8:108995475-108995910:+|nuORF	ENST00000520874.1_1_8:108995475-108995910:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	604.70068359375	2	604.30131	1206.58807	-0.47293	-0.00028579	0.028342	1.7127E-05	-0.44459	-0.00026867	604.3012109492162	30.901	0.45362	31.619	31.367	31.821	0.71857					16	8	3	0	0	0	3.9575E-07	1	10915	10915		153.7	108	1	3382400			1035	5751	676	685	1013	1013					-0.006963985701304409
AEGSADPFAPV	11	Unmodified	_AEGSADPFAPV_					0	0	0		SHANK1|p.G2044E|1|0.55|ENSG00000161681|chr19:50662320-50662320|C/T|missense_variant	SHANK1|p.G2044E|1|0.55|ENSG00000161681|chr19:50662320-50662320|C/T|missense_variant	SHANK1|p.G2044E|1|0.55|ENSG00000161681|chr19:50662320-50662320|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	530.6818237304688	2	530.750921	1059.48729	-0.47791	-0.00025365	0.54562	0.00028959	0.067715	3.594E-05	530.750896459377	71.061	0.66537	71.061	70.648	71.313	0					24	12	3	0	0	0	0.72565	1	25899	25899		13.042	1.928	1	3728200			1036	29154	677	686	1014	1014					-0.040074305529969934
AEGSESDEQW	10	Unmodified	_AEGSESDEQW_					0	0	0			REV__nc|ENSG00000031003|Q9NYF5-3|FAM13B	REV__nc|ENSG00000031003|Q9NYF5-3|FAM13B	MULTI-MSMS	A375_MHC_IP_R1	1	569.1952514648438	2	569.220182	1136.42581	-0.28007	-0.00015942	-0.85926	-0.00048911	-1.1393	-0.00064853	569.7206440655725	89.262	0.66046	89.262	89.069	89.73	0					14	12	2	0	0	0	0.71245	1	32717	32717		6.7232	1.9672	1	906470	+		1037	16299	678	687	1015	1015					-0.13694407042930834
AEGSQLAVFDG	11	Unmodified	_AEGSQLAVFDG_					0	0	0			REV__ENSG00000124249|ENST00000372861|KCNK15	REV__ENSG00000124249|ENST00000372861|KCNK15	MULTI-MSMS	A375_MHC_IP_R1	1	548.1958618164062	2	547.261653	1092.50875	-0.37444	-0.00020492	-0.4514	-0.00024704	-0.82584	-0.00045195	547.2613947428637	54.289	0.50428	54.289	54.063	54.567	0					21	9	3	0	0	0	0.69231	1	19344	19344		16.149	4.5088	1	3277700	+		1038	18290	679	688	1016	1016					-0.03380045524272646
AEGSQLAVFDG	11	Unmodified	_AEGSQLAVFDG_					0	0	0			REV__ENSG00000124249|ENST00000372861|KCNK15	REV__ENSG00000124249|ENST00000372861|KCNK15	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	547.261653	1092.50875	-1.283	-0.00070211	-0.40594	-0.00022216	-1.6889	-0.00092427	547.2614805744157	53.66	0.71774	54.411	54.046	54.764	0.75105	0.061312	2.4821E-05	NaN	16.149	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3307600	+		1039	18290	679	688							-0.03380045524272646
AEGSVAREEW	10	Unmodified	_AEGSVAREEW_					0	0	0		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-MSMS	A375_MHC_IP_R1	1	567.6648559570312	2	567.264727	1132.5149	-0.32127	-0.00018225	0.10385	5.891E-05	-0.21742	-0.00012334	567.7662514026975	34.813	0.51019	34.813	34.708	35.218	0					15	9	2	0	0	0	0.046017	1	11581	11581		77.049	39.974	1	5786300			1040	7796	680	689	1017	1017					-0.04605527292756051
AEGSVAREEW	10	Unmodified	_AEGSVAREEW_					0	0	0		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-MSMS	A375_MHC_IP_R2	2	567.6636962890625	2	567.264727	1132.5149	-0.7274	-0.00041263	-0.33433	-0.00018965	-1.0617	-0.00060228	567.2646029086812	34.141	0.55912	34.893	34.702	35.262	0.75225					19	10	2	0	0	0	0.046017	1	12379	12379		77.049	39.974	1	7199800			1041	7796	680	689	1018	1018					-0.04605527292756051
AEGSWFQKI	9	Unmodified	_AEGSWFQKI_					0	0	0		ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000595897.5_1_19:42402462-42407822:+|nuORF;ARHGEF1|p.S513F|1|0.3|ENSG00000076928|chr19:41902573-41902573|C/T|missense_variant	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	533.6716918945312	2	533.271824	1064.5291	-0.64395	-0.0003434	-0.34993	-0.00018661	-0.99389	-0.00053001	533.271567694666	75.46	0.5036	75.46	75.11	75.614	0					15	9	2	0	0	0	0.65527	1	27513	27513		22.736	11.096	1	1455000			1042	1641	681	690	1019	1019					-0.0005883007379452465
AEGSWFQKI	9	Unmodified	_AEGSWFQKI_					0	0	0		ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000595897.5_1_19:42402462-42407822:+|nuORF;ARHGEF1|p.S513F|1|0.3|ENSG00000076928|chr19:41902573-41902573|C/T|missense_variant	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	533.671630859375	2	533.271824	1064.5291	-0.78883	-0.00042066	-0.42795	-0.00022822	-1.2168	-0.00064888	533.2712730851688	74.595	0.71343	75.332	74.907	75.621	0.73751					31	13	3	0	0	0	0.066859	1	28293	28293		57.722	21.678	1	1990500			1043	1641	681	690	1020	1020					-0.0005883007379452465
AEGTAIKDL	9	Unmodified	_AEGTAIKDL_					0	0	0		nc|ENSG00000109814|O60701-3|UGDH;ENSG00000109814|ENST00000316423|UGDH;nc|ENSG00000109814|O60701-2|UGDH	nc|ENSG00000109814|O60701-3|UGDH	nc|ENSG00000109814|O60701-3|UGDH	MULTI-SECPEP	A375_MHC_IP_R1	1	459.6502685546875	2	459.250557	916.486562	-0.044126	-2.0265E-05	-0.18347	-8.4259E-05	-0.2276	-0.00010452	459.2503713958745	35.548	0.86563	35.548	35.319	36.184	0					41	16	5	0	0	0	0.016541	1	11794	11794		96.936	43.103	1	29916000			1044	2895	682	691	1021	1021					0.024977747979505693
AEGTAIKDL	9	Unmodified	_AEGTAIKDL_					0	0	0		nc|ENSG00000109814|O60701-3|UGDH;ENSG00000109814|ENST00000316423|UGDH;nc|ENSG00000109814|O60701-2|UGDH	nc|ENSG00000109814|O60701-3|UGDH	nc|ENSG00000109814|O60701-3|UGDH	MULTI-SECPEP	A375_MHC_IP_R2	2	459.6501770019531	2	459.250557	916.486562	-0.57837	-0.00026562	0.050711	2.3289E-05	-0.52766	-0.00024233	459.2504457248588	34.733	0.8596	35.497	35.273	36.132	0.76338					44	16	4	0	0	0	0.0575	1	12536	12536		76.825	18.146	1	27496000			1045	2895	682	691	1022	1022					0.024977747979505693
AEGTEEGARW	10	Unmodified	_AEGTEEGARW_					0	0	0		nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9	nc|ENSG00000135506|Q13438-4|OS9	nc|ENSG00000135506|Q13438-4|OS9	MULTI-SECPEP	A375_MHC_IP_R1	1	553.6482543945312	2	553.249077	1104.4836	-0.72768	-0.00040259	1.0696	0.00059175	0.3419	0.00018916	553.2488581207331	28.91	0.50693	28.91	28.694	29.201	0					20	9	3	0	0	0	0.015005	1	8987	8987		132.38	80.111	1	4224900			1046	4691	683	692	1023	1023					-0.06446100326866144
AEGTEEGARW	10	Unmodified	_AEGTEEGARW_					0	0	0		nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9	nc|ENSG00000135506|Q13438-4|OS9	nc|ENSG00000135506|Q13438-4|OS9	MULTI-SECPEP	A375_MHC_IP_R2	2	553.6484985351562	2	553.249077	1104.4836	-1.1063	-0.00061205	1.3278	0.00073462	0.22155	0.00012257	553.2490671576955	28.277	0.40624	28.956	28.757	29.163	0.67857					17	7	3	0	0	0	0.023912	1	9751	9751		103.82	56.075	1	3188800			1047	4691	683	692	1024	1024					-0.06446100326866144
AEGTFPGKI	9	Unmodified	_AEGTFPGKI_					0	0	0		ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	MULTI-SECPEP	A375_MHC_IP_R1	1	460.6479187011719	2	460.247818	918.481082	-0.13742	-6.3247E-05	-0.22455	-0.00010335	-0.36197	-0.0001666	460.2479495474191	44.074	1.7343	44.074	42.993	44.727	0					56	33	2	0	0	0	0.14572	1	15258	15258		45.7	3.86	1	10339000			1048	4038	684	693	1025	1025					0.01858096006139931
AEGTFPGKI	9	Unmodified	_AEGTFPGKI_					0	0	0		ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	MULTI-MSMS	A375_MHC_IP_R2	2	460.3150634765625	2	460.247818	918.481082	-0.28775	-0.00013244	-1.3822	-0.00063613	-1.6699	-0.00076857	460.24780759537856	43.331	1.4653	44.104	43.472	44.937	0.7724					69	28	3	0	0	0	0.34064	1	15961	15961		27.629	2.2295	1	11982000			1049	4038	684	693	1026	1026					0.01858096006139931
AEGTTTKKETW	11	Unmodified	_AEGTTTKKETW_					0	0	0			REV__ENST00000301455.6_1_19:8438821-8439109:+|nuORF	REV__ENST00000301455.6_1_19:8438821-8439109:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	418.1271057128906	3	417.878704	1250.61428	0.12543	5.2413E-05	0.19932	8.3291E-05	0.32474	0.0001357	417.8785924016186	34.328	0.75778	34.328	33.95	34.708	0					27	14	3	0	0	0	0.73239	1	11167	11167		6.6235	1.9075	1	10207000	+		1050	23426	685	694	1027	1027					-0.0010012939865191584
AEGVFEKGSF	10	Unmodified	_AEGVFEKGSF_					0	0	0		nc|ENSG00000156535|Q6YHK3-2|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;nc|ENSG00000156535|Q6YHK3-3|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	MULTI-SECPEP	A375_MHC_IP_R2	2	536.1608276367188	2	535.761289	1069.50803	-1.1904	-0.00063778	0.26767	0.00014341	-0.92275	-0.00049437	535.7613354455827	52.07	0.61038	52.823	52.524	53.134	0.75225					34	11	4	0	0	0	0.22266	1	19583	19583		70.929	25.229	1	13510000			1051	6199	686	695	1028	1028					-0.023948401733150604
AEGWAAPFP	9	Unmodified	_AEGWAAPFP_					0	0	0		ENST00000550376.5_1_12:108154390-108154935:-|nuORF	ENST00000550376.5_1_12:108154390-108154935:-|nuORF	ENST00000550376.5_1_12:108154390-108154935:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	473.695556640625	2	473.226885	944.439217	-0.48598	-0.00022998	-2.0567	-0.00097328	-2.5427	-0.0012033	473.2248070937688	33.347	0.5079	33.347	33.09	33.597	0					19	9	3	0	0	0	0.40041	1	10869	10869		38.151	21.038	1	2742800			1052	13368	687	696	1029	1029					-0.03522459682392309
AEHDRIARQW	10	Unmodified	_AEHDRIARQW_					0	0	0		ENSG00000170035|ENST00000410062|UBE2E3	ENSG00000170035|ENST00000410062|UBE2E3	ENSG00000170035|ENST00000410062|UBE2E3	MULTI-MSMS	A375_MHC_IP_R1	1	428.2862854003906	3	427.886415	1280.63742	-0.1555	-6.6538E-05	-0.41549	-0.00017778	-0.571	-0.00024432	427.88623520282954	23.15	0.71102	23.15	22.924	23.635	0					30	13	3	0	0	0	0.0067344	1	6296	6296		132.57	79.097	1	88990000			1053	7464	688	697	1030	1030					0.008323542293283026
AEHDRIARQW	10	Unmodified	_AEHDRIARQW_					0	0	0		ENSG00000170035|ENST00000410062|UBE2E3	ENSG00000170035|ENST00000410062|UBE2E3	ENSG00000170035|ENST00000410062|UBE2E3	MULTI-SECPEP	A375_MHC_IP_R1	1	641.72509765625	2	641.325985	1280.63742	-0.60227	-0.00038625	-0.26613	-0.00017068	-0.8684	-0.00055693	641.3256247948947	23.15	0.30575	23.15	23.024	23.33	0					9	5	2	0	0	0	0.75968	1	6340	6340		30.703	10.123	1	5240700			1054	7464	688	697	1031	1031					0.008323542293283026
AEHDRIARQW	10	Unmodified	_AEHDRIARQW_					0	0	0		ENSG00000170035|ENST00000410062|UBE2E3	ENSG00000170035|ENST00000410062|UBE2E3	ENSG00000170035|ENST00000410062|UBE2E3	MULTI-MSMS	A375_MHC_IP_R2	2	428.2862243652344	3	427.886415	1280.63742	-0.52017	-0.00022257	-0.12269	-5.2496E-05	-0.64286	-0.00027507	427.8863508494039	20.271	1.0669	20.881	20.549	21.616	0.61029					54	20	3	0	0	0	0.017675	4	6240	6191;6225;6240;6458		87.123	52.902	1	20757000			1055	7464	688	697	1032;1033;1034;1035	1034					0.008323542293283026
AEHDRMARQW	10	Unmodified	_AEHDRMARQW_					0	0	0		ENST00000493707.1_1_3:23907959-23932094:+|nuORF;ENST00000475680.5_1_3:23852460-23932094:+|nuORF;nc|ENSG00000170142|P51965-2|UBE2E1;nc|ENSG00000170142|P51965-3|UBE2E1;ENSG00000170142|ENST00000306627|UBE2E1;ENSG00000182247|ENST00000396703|UBE2E2	ENST00000493707.1_1_3:23907959-23932094:+|nuORF	ENST00000493707.1_1_3:23907959-23932094:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	434.27178955078125	3	433.871889	1298.59384	-0.2583	-0.00011207	0.089357	3.877E-05	-0.16895	-7.3301E-05	433.8720068766334	19.658	0.40674	19.658	19.471	19.877	0					19	7	3	0	0	0	0.30731	1	4930	4930		55.249	55.249	1	8266200			1056	7474	689	698	1036	1036					-0.04351578539467482
AEHDRMARQW	10	Unmodified	_AEHDRMARQW_					0	0	0		ENST00000493707.1_1_3:23907959-23932094:+|nuORF;ENST00000475680.5_1_3:23852460-23932094:+|nuORF;nc|ENSG00000170142|P51965-2|UBE2E1;nc|ENSG00000170142|P51965-3|UBE2E1;ENSG00000170142|ENST00000306627|UBE2E1;ENSG00000182247|ENST00000396703|UBE2E2	ENST00000493707.1_1_3:23907959-23932094:+|nuORF	ENST00000493707.1_1_3:23907959-23932094:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	434.2716064453125	3	433.871889	1298.59384	-0.52374	-0.00022724	-0.37658	-0.00016339	-0.90032	-0.00039062	433.87178073065365	18.955	0.28076	19.559	19.452	19.733	0.60308					9	5	3	0	0	0	0.94651	1	5770	5770		3.5871	0.26742	1	16914000			1057	7474	689	698	1037	1037					-0.04351578539467482
AEHERELAL	9	Unmodified	_AEHERELAL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000173898|O15020-2|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R2	2	534.13818359375	2	534.277638	1066.54072	-1.2227	-0.00065327	0.3373	0.00018021	-0.88541	-0.00047306	534.2778929477332	28.419	0.25393	29.097	28.96	29.214	0.67857					7	4	2	0	0	0	0.55534	1	9825	9825		26.021	11.615	1	2436900			1058	3298;7838	690	699	1038	1038					0.010113669495240174
AEHERELAL	9	Unmodified	_AEHERELAL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000173898|O15020-2|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MATCH	A375_MHC_IP_R1	1		2	534.277638	1066.54072	-1.1107	-0.00059344	0.74049	0.00039563	-0.37024	-0.00019781	534.2779801119005	29.199	0.35664	29.199	28.996	29.353	0	0.050583	0.000362	NaN	26.021	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2016500			1059	3298;7838	690	699							0.010113669495240174
AEHEYYERY	9	Unmodified	_AEHEYYERY_					0	0	0		ENSG00000178567|ENST00000322716|EPM2AIP1	ENSG00000178567|ENST00000322716|EPM2AIP1	ENSG00000178567|ENST00000322716|EPM2AIP1	MULTI-MSMS	A375_MHC_IP_R1	1	420.9156494140625	3	420.515765	1258.52547	-0.15074	-6.3389E-05	0.0066085	2.779E-06	-0.14413	-6.061E-05	420.5157036678175	24.031	0.50802	24.031	23.889	24.397	0					21	9	3	0	0	0	0.035419	1	6746	6746		57.108	42.27	1	6664800			1060	8165	691	700	1039	1039					-0.09345544638335923
AEHFLEQQM	9	Oxidation (M)	_AEHFLEQQM(Oxidation (M))_		AEHFLEQQM(1)		AEHFLEQQM(82)	0	0	1		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	A375_MHC_IP_R1	1	575.6571655273438	2	574.755681	1147.49681	-0.26495	-0.00015228	-0.3205	-0.00018421	-0.58545	-0.00033649	574.7556134387988	33.242	0.76006	33.242	32.938	33.698	0					29	14	3	0	0	0	0.021889	1	10809	10809		81.89	57.87	1	11883000			1061	6668	692	701	1040	1040		354			-0.07103985539129098
AEHFLEQQM	9	Oxidation (M)	_AEHFLEQQM(Oxidation (M))_		AEHFLEQQM(1)		AEHFLEQQM(110)	0	0	1		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	A375_MHC_IP_R2	2	575.1551513671875	2	574.755681	1147.49681	-0.2562	-0.00014725	-0.36354	-0.00020895	-0.61974	-0.0003562	574.7555272564173	32.57	0.6096	33.307	33.01	33.62	0.73692					30	11	3	0	0	0	0.0098085	1	11566	11566		114.2	80.099	1	12274000			1062	6668	692	701	1041	1041		354			-0.07103985539129098
AEHFLEQQM	9	Unmodified	_AEHFLEQQM_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-SECPEP	A375_MHC_IP_R1	1	567.1380615234375	2	566.758223	1131.50189	-0.0766	-4.3414E-05	-0.05436	-3.0809E-05	-0.13096	-7.4223E-05	566.7581876278811	49.676	0.56059	49.676	49.336	49.896	0					24	10	3	0	0	0	0.20645	1	17600	17600		47.749	18.667	1	4517600			1063	6668	692	702	1042	1042					-0.0585968167649753
AEHFLEQQM	9	Unmodified	_AEHFLEQQM_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-SECPEP	A375_MHC_IP_R2	2	567.15771484375	2	566.758223	1131.50189	-0.51495	-0.00029185	-0.32497	-0.00018418	-0.83993	-0.00047603	566.7581235055983	48.907	0.66279	49.664	49.332	49.995	0.75737					23	12	3	0	0	0	0.50702	1	18338	18338		19.257	2.3147	1	6102500			1064	6668	692	702	1043	1043					-0.0585968167649753
AEHIESRTL	9	Unmodified	_AEHIESRTL_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	A375_MHC_IP_R1	1	528.6773071289062	2	528.277638	1054.54072	-0.34323	-0.00018132	-0.49321	-0.00026055	-0.83644	-0.00044187	528.2772817403265	21.002	0.61154	21.002	20.638	21.25	0					28	11	3	0	0	0	0.021859	1	5429	5429		81.915	49.13	1	5752800			1065	5711	693	703	1044	1044					0.01563366949540068
AEHIESRTL	9	Unmodified	_AEHIESRTL_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-SECPEP	A375_MHC_IP_R1	1	352.9208068847656	3	352.520851	1054.54072	0.088374	3.1154E-05	-0.16894	-5.9556E-05	-0.080568	-2.8402E-05	352.52077193596637	20.972	0.91781	20.972	20.485	21.403	0					56	17	5	0	0	0	0.074405	1	5384	5384		57.108	37.482	1	18573000			1066	5711	693	703	1045	1045					0.01563366949540068
AEHIESRTL	9	Unmodified	_AEHIESRTL_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-SECPEP	A375_MHC_IP_R1	1	353.301025390625	3	352.520851	1054.54072	0.10905	3.8441E-05	-0.15131	-5.3338E-05	-0.042259	-1.4897E-05	352.5207333634035	22.95	0.35094	22.95	22.723	23.074	0					9	6	2	0	0	0	0.74169	1	6225	6225		11.518	4.4162	1	2741500			1067	5711	693	703	1046	1046					0.01563366949540068
AEHIESRTL	9	Unmodified	_AEHIESRTL_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	A375_MHC_IP_R2	2	528.6770629882812	2	528.277638	1054.54072	-0.81318	-0.00042958	-0.50022	-0.00026425	-1.3134	-0.00069384	528.2772473254497	19.459	0.45741	20.062	19.833	20.291	0.60308					21	8	3	0	0	0	0.017012	1	5986	5986		87.258	51.131	1	3633800			1068	5711	693	703	1047	1047					0.01563366949540068
AEHIESRTL	9	Unmodified	_AEHIESRTL_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-SECPEP	A375_MHC_IP_R2	2	352.9205627441406	3	352.520851	1054.54072	-0.52023	-0.00018339	0.030544	1.0767E-05	-0.48968	-0.00017262	352.52083162986236	19.506	0.65854	20.116	19.79	20.448	0.60966					35	12	4	0	0	0	0.038931	1	5947	5947		74.772	36.157	1	14177000			1069	5711	693	703	1048	1048					0.01563366949540068
AEHIESRTL	9	Unmodified	_AEHIESRTL_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-SECPEP	A375_MHC_IP_R2	2	352.26971435546875	3	352.520851	1054.54072	-0.57572	-0.00020295	0.083186	2.9325E-05	-0.49254	-0.00017363	352.5208883776309	22.458	0.25584	23.077	22.948	23.204	0.61932					8	4	3	0	0	0	0.50484	1	7139	7139		21.799	9.6247	1	1513900			1070	5711	693	703	1049	1049					0.01563366949540068
AEHKERLVENE	11	Unmodified	_AEHKERLVENE_					0	0	0			REV__ENST00000588207.1_1_18:57636769-57637372:+|nuORF	REV__ENST00000588207.1_1_18:57636769-57637372:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	452.2969665527344	3	451.896757	1352.66844	-0.18055	-8.159E-05	0.68534	0.0003097	0.50479	0.00022811	451.8971619043548	20.024	0.40461	20.024	19.776	20.18	0					17	7	3	0	0	0	0.7039	1	5064	5064		8.7518	1.3227	1	4896300	+		1071	26413	694	704	1050	1050					0.006214627529288919
AEHKERLVENE	11	Unmodified	_AEHKERLVENE_					0	0	0			REV__ENST00000588207.1_1_18:57636769-57637372:+|nuORF	REV__ENST00000588207.1_1_18:57636769-57637372:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	451.896757	1352.66844	-0.18055	-8.159E-05	0.68534	0.0003097	0.50479	0.00022811	451.8971619043548	20.024	0.40461	20.024	19.776	20.18	0	0.19716	2.2331E-05	NaN	8.7518	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4896300	+		1072	26413	694	704							0.006214627529288919
AEHLGDFHRTY	11	Unmodified	_AEHLGDFHRTY_					0	0	0		ENSG00000125818|ENST00000335877|PSMF1	ENSG00000125818|ENST00000335877|PSMF1	ENSG00000125818|ENST00000335877|PSMF1	MULTI-MSMS	A375_MHC_IP_R1	1	449.6138610839844	3	449.214309	1344.6211	-0.27328	-0.00012276	-0.53399	-0.00023988	-0.80727	-0.00036264	449.2138896347556	27.153	0.5029	27.153	26.878	27.381	0					14	9	2	0	0	0	0.00033954	1	8196	8196		117.75	85.231	1	15871000			1073	3993	695	705	1051	1051					-0.037427717274340466
AEHLGDFHRTY	11	Unmodified	_AEHLGDFHRTY_					0	0	0		ENSG00000125818|ENST00000335877|PSMF1	ENSG00000125818|ENST00000335877|PSMF1	ENSG00000125818|ENST00000335877|PSMF1	MULTI-SECPEP	A375_MHC_IP_R2	2	449.61407470703125	3	449.214309	1344.6211	-0.68767	-0.00030891	-0.32743	-0.00014709	-1.0151	-0.000456	449.21413005717346	26.527	0.35521	27.187	27.008	27.363	0.65992					12	6	2	0	0	0	0.12923	1	8979	8979		79.697	64.158	1	16194000			1074	3993	695	705	1052	1052					-0.037427717274340466
AEHLRKRLM	9	Unmodified	_AEHLRKRLM_					0	0	0		nc|ENSG00000136891|Q9NXF1-2|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	MULTI-SECPEP	A375_MHC_IP_R1	1	577.7342529296875	2	577.334767	1152.65498	-0.065115	-3.7593E-05	-0.37162	-0.00021455	-0.43673	-0.00025214	577.3343981764432	62.708	0.56304	62.708	62.403	62.966	0					20	10	3	0	0	0	0.67483	1	22656	22656		20.454	0	1	2160000			1075	14622	696	706	1053	1053					0.08475978230626424
AEHPELRSY	9	Unmodified	_AEHPELRSY_					0	0	0		nc|ENSG00000136193|Q12765-3|SCRN1;ENSG00000136193|ENST00000242059|SCRN1;nc|ENSG00000136193|Q12765-2|SCRN1	nc|ENSG00000136193|Q12765-3|SCRN1	nc|ENSG00000136193|Q12765-3|SCRN1	MULTI-SECPEP	A375_MHC_IP_R1	1	368.24896240234375	3	367.848967	1100.52507	0.0047179	1.7355E-06	0.50775	0.00018677	0.51247	0.00018851	367.84900680840485	23.806	1.0638	23.806	23.533	24.597	0					61	20	5	0	0	0	0.053555	1	6616	6616		59.013	38.432	1	76640000			1076	4763	697	707	1054	1054					-0.021169195675156516
AEHPELRSY	9	Unmodified	_AEHPELRSY_					0	0	0		nc|ENSG00000136193|Q12765-3|SCRN1;ENSG00000136193|ENST00000242059|SCRN1;nc|ENSG00000136193|Q12765-2|SCRN1	nc|ENSG00000136193|Q12765-3|SCRN1	nc|ENSG00000136193|Q12765-3|SCRN1	MULTI-SECPEP	A375_MHC_IP_R1	1	551.6692504882812	2	551.269813	1100.52507	-0.81121	-0.0004472	0.10956	6.04E-05	-0.70164	-0.0003868	551.2698180144379	23.813	0.50734	23.813	23.687	24.194	0					14	9	3	0	0	0	0.013536	1	6620	6620		121.35	84.84	1	26668000			1077	4763	697	707	1055	1055					-0.021169195675156516
AEHPELRSY	9	Unmodified	_AEHPELRSY_					0	0	0		nc|ENSG00000136193|Q12765-3|SCRN1;ENSG00000136193|ENST00000242059|SCRN1;nc|ENSG00000136193|Q12765-2|SCRN1	nc|ENSG00000136193|Q12765-3|SCRN1	nc|ENSG00000136193|Q12765-3|SCRN1	MULTI-SECPEP	A375_MHC_IP_R2	2	368.2488708496094	3	367.848967	1100.52507	-0.14589	-5.3666E-05	0.18242	6.7103E-05	0.03653	1.3437E-05	367.84894282347534	23.057	0.91717	23.687	23.062	23.979	0.63014					55	17	6	0	0	0	0.042716	1	7354	7354		70.929	51.785	1	58246000			1078	4763	697	707	1056	1056					-0.021169195675156516
AEHPELRSY	9	Unmodified	_AEHPELRSY_					0	0	0		nc|ENSG00000136193|Q12765-3|SCRN1;ENSG00000136193|ENST00000242059|SCRN1;nc|ENSG00000136193|Q12765-2|SCRN1	nc|ENSG00000136193|Q12765-3|SCRN1	nc|ENSG00000136193|Q12765-3|SCRN1	MULTI-SECPEP	A375_MHC_IP_R2	2	551.6455078125	2	551.269813	1100.52507	-1.1192	-0.000617	0.20587	0.00011349	-0.91336	-0.00050351	551.2698036342516	23.07	0.50881	23.7	23.42	23.928	0.63014					16	9	3	0	0	0	0.048303	1	7362	7362		93.166	56.66	1	16451000			1079	4763	697	707	1057	1057					-0.021169195675156516
AEHPTIKIFW	10	Unmodified	_AEHPTIKIFW_					0	0	0		nc|ENSG00000148634|Q5GLZ8-6|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000427635.6_1_10:69682690-69747802:-|nuORF	nc|ENSG00000148634|Q5GLZ8-6|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-MSMS	A375_MHC_IP_R1	1	414.96075439453125	3	414.560758	1240.66044	0.27295	0.00011315	-0.099093	-4.108E-05	0.17385	7.2072E-05	414.56061652796024	83.625	0.55762	83.625	83.329	83.887	0					19	10	3	0	0	0	0.040521	1	30607	30607		78.61	46.975	1	2490900			1080	5755	698	708	1058	1058					0.0497398029406213
AEHPTIKIFW	10	Unmodified	_AEHPTIKIFW_					0	0	0		nc|ENSG00000148634|Q5GLZ8-6|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000427635.6_1_10:69682690-69747802:-|nuORF	nc|ENSG00000148634|Q5GLZ8-6|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-SECPEP	A375_MHC_IP_R2	2	415.2948303222656	3	414.560758	1240.66044	-0.006015	-2.4936E-06	-0.34647	-0.00014363	-0.35249	-0.00014613	414.89492610974736	82.728	0.45218	83.471	83.246	83.698	0.74293					15	8	2	0	0	0	0.2613	1	31436	31436		59.013	41.15	1	2675900			1081	5755	698	708	1059	1059					0.0497398029406213
AEHQDQEV	8	Unmodified	_AEHQDQEV_					0	0	0			REV__nc|ENSG00000100503|Q8N4C6-6|NIN	REV__nc|ENSG00000100503|Q8N4C6-6|NIN	MULTI-SECPEP	A375_MHC_IP_R2	2	478.6097412109375	2	478.209421	954.404288	-0.35202	-0.00016834	0.65358	0.00031255	0.30155	0.00014421	478.2097047416487	43.938	0.4042	44.707	44.53	44.934	0.7691					14	7	2	0	0	0	0.97144	1	16416	16416		5.2307	0	1	3034800	+		1082	17098	699	709	1060	1060					-0.07473747280994303
AEHREVRHTY	10	Unmodified	_AEHREVRHTY_					0	0	0		ENSG00000180488|ENST00000370791|MIGA1;nc|ENSG00000180488|Q8NAN2|MIGA1;nc|ENSG00000180488|Q8NAN2-2|MIGA1;ENST00000476203.2_1_1:78269082-78324778:+|nuORF	ENSG00000180488|ENST00000370791|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	MULTI-MSMS	A375_MHC_IP_R1	1	433.274169921875	3	433.218054	1296.63233	-0.15792	-6.8415E-05	-0.24198	-0.00010483	-0.3999	-0.00017325	433.2177611575083	23.185	0.30264	23.185	22.924	23.227	0					8	5	2	0	0	0	0.71564	1	6268	6268		2.8433	0.4085	1	3253700			1083	8301	700	710	1061	1061					-0.004119496333032657
AEHSTVITF	9	Unmodified	_AEHSTVITF_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;ENST00000558338.1_1_15:62199375-62209725:-|nuORF;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1559753417969	2	502.756007	1003.49746	-0.74184	-0.00037297	-0.015709	-7.8978E-06	-0.75755	-0.00038086	502.7560727705267	55.25	0.60867	56.001	55.729	56.337	0.75075					24	11	3	0	0	0	0.030624	1	20874	20874		78.149	51.266	1	5380600			1084	14849;4172	701	711	1062	1062					-0.004148228277699673
AEIAEIARL	9	Unmodified	_AEIAEIARL_					0	0	0		nc|ENSG00000099814|Q9Y4F5-3|CEP170B;ENSG00000099814|ENST00000414716|CEP170B;nc|ENSG00000099814|Q9Y4F5|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	MULTI-MSMS	A375_MHC_IP_R1	1	493.687255859375	2	493.287474	984.560395	-0.28357	-0.00013988	-0.32732	-0.00016146	-0.61089	-0.00030134	493.2873567135457	72.887	0.71074	72.887	72.524	73.235	0					38	13	4	0	0	0	0.030891	1	26508	26508		74.2	7.743	1	6082100			1085	2085	702	712	1063	1063					0.06749742960278127
AEIAEIARL	9	Unmodified	_AEIAEIARL_					0	0	0		nc|ENSG00000099814|Q9Y4F5-3|CEP170B;ENSG00000099814|ENST00000414716|CEP170B;nc|ENSG00000099814|Q9Y4F5|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	MULTI-MSMS	A375_MHC_IP_R2	2	493.6867980957031	2	493.287474	984.560395	-0.73776	-0.00036393	0.35627	0.00017574	-0.38149	-0.00018818	493.2877972023383	72.069	0.80849	72.803	72.314	73.122	0.73421					35	15	4	0	0	0	0.012447	1	27313	27313		93.166	17.405	1	8449300			1086	2085	702	712	1064	1064					0.06749742960278127
AEIDAHLVAL	10	Unmodified	_AEIDAHLVAL_					0	0	0		ENST00000554457.1_1_14:35786443-35786509:+|nuORF;nc|ENSG00000100902|P60900-3|PSMA6;ENST00000400275.2_1_Y:15398697-15399255:+|nuORF;nc|ENSG00000100902|P60900-2|PSMA6;ENSG00000100902|ENST00000261479|PSMA6	ENST00000554457.1_1_14:35786443-35786509:+|nuORF	ENST00000554457.1_1_14:35786443-35786509:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	526.6923828125	2	526.292756	1050.57096	-0.61303	-0.00032263	0.25247	0.00013287	-0.36056	-0.00018976	526.2929130627025	84.015	0.40499	84.015	83.786	84.191	0					12	7	2	0	0	0	0.74754	1	30800	30800		29.082	4.4077	1	1588900			1087	2229	703	713	1065	1065					0.04769725614710296
AEIDARNDSF	10	Unmodified	_AEIDARNDSF_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R1	1	569.6621704101562	2	569.262185	1136.50982	-0.35756	-0.00020354	0.50877	0.00028962	0.15121	8.6076E-05	569.2624694591939	37.736	0.76621	37.736	37.402	38.168	0					45	14	5	0	0	0	0.021562	1	12707	12707		111.31	59.679	1	69121000			1088	3298	704	714	1066	1066					-0.05297831155394306
AEIDARNDSF	10	Unmodified	_AEIDARNDSF_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R2	2	569.66162109375	2	569.262185	1136.50982	-0.98205	-0.00055905	0.60555	0.00034472	-0.3765	-0.00021433	569.262526363113	37.021	0.96732	37.792	37.461	38.429	0.7709					49	18	5	0	0	0	0.016155	1	13492	13492		111.31	76.377	1	70617000			1089	3298	704	714	1067	1067					-0.05297831155394306
AEIDDRKQL	9	Unmodified	_AEIDDRKQL_					0	0	0		ENSG00000141425|ENST00000399022|RPRD1A;nc|ENSG00000141425|Q96P16-3|RPRD1A	ENSG00000141425|ENST00000399022|RPRD1A	ENSG00000141425|ENST00000399022|RPRD1A	MULTI-MSMS	A375_MHC_IP_R1	1	544.7391967773438	2	544.290745	1086.56694	-0.34443	-0.00018747	-0.47475	-0.0002584	-0.81918	-0.00044587	544.2904661668166	21.224	0.86251	21.224	20.946	21.808	0					29	16	2	0	0	0	0.06083	2	5595	5519;5595		60.074	16.092	1	23385000			1090	5238	705	715	1068;1069	1069					0.027116361209891693
AEIDDRKQL	9	Unmodified	_AEIDDRKQL_					0	0	0		ENSG00000141425|ENST00000399022|RPRD1A;nc|ENSG00000141425|Q96P16-3|RPRD1A	ENSG00000141425|ENST00000399022|RPRD1A	ENSG00000141425|ENST00000399022|RPRD1A	MULTI-SECPEP	A375_MHC_IP_R2	2	363.6286315917969	3	363.196256	1086.56694	-0.39158	-0.00014222	-0.33888	-0.00012308	-0.73046	-0.0002653	363.19596745970216	19.805	1.0145	20.415	19.841	20.855	0.61029					50	19	4	0	0	0	0.059859	1	6099	6099		65.474	29.861	1	24111000			1091	5238	705	715	1070	1070					0.027116361209891693
AEIDDRKQL	9	Unmodified	_AEIDDRKQL_					0	0	0		ENSG00000141425|ENST00000399022|RPRD1A;nc|ENSG00000141425|Q96P16-3|RPRD1A	ENSG00000141425|ENST00000399022|RPRD1A	ENSG00000141425|ENST00000399022|RPRD1A	MULTI-SECPEP	A375_MHC_IP_R2	2	363.5960388183594	3	363.196256	1086.56694	-0.43777	-0.000159	-0.32197	-0.00011694	-0.75974	-0.00027593	363.1960876567472	22.661	0.61292	23.291	22.959	23.572	0.63014					15	11	2	0	0	0	0.5212	1	7226	7226		24.882	8.7444	1	2601700			1092	5238	705	715	1071	1071					0.027116361209891693
AEIDDRKQL	9	Unmodified	_AEIDDRKQL_					0	0	0		ENSG00000141425|ENST00000399022|RPRD1A;nc|ENSG00000141425|Q96P16-3|RPRD1A	ENSG00000141425|ENST00000399022|RPRD1A	ENSG00000141425|ENST00000399022|RPRD1A	MULTI-SECPEP	A375_MHC_IP_R2	2	544.6900634765625	2	544.290745	1086.56694	-1.1167	-0.00060779	-0.11927	-6.492E-05	-1.2359	-0.0006727	544.2906154675447	19.764	0.70811	20.374	20.044	20.752	0.61029					23	13	2	0	0	0	0.042716	1	6064	6064		96.367	36.293	1	8553100			1093	5238	705	715	1072	1072					0.027116361209891693
AEIDEPNAF	9	Unmodified	_AEIDEPNAF_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MULTI-MSMS	A375_MHC_IP_R1	1	503.6295471191406	2	503.229822	1004.44509	-0.55079	-0.00027717	0.47089	0.00023696	-0.079901	-4.0208E-05	503.2299258788291	66.247	0.91442	66.247	65.819	66.734	0					50	17	5	0	0	0	0.02559	3	23933	23900;23933;24014		78.728	53.329	1	17231000			1094	5099	706	716	1073;1074;1075	1074					-0.056954059613758545
AEIDEPNAF	9	Unmodified	_AEIDEPNAF_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MULTI-MSMS	A375_MHC_IP_R2	2	503.6295166015625	2	503.229822	1004.44509	-0.81502	-0.00041014	0.28881	0.00014534	-0.52621	-0.00026481	503.2298896265435	65.62	0.9156	66.359	65.917	66.833	0.73811					48	17	4	0	0	0	0.070818	2	24817	24788;24817		56.177	31.798	1	15850000			1095	5099	706	716	1076;1077	1077					-0.056954059613758545
AEIDFKRYA	9	Unmodified	_AEIDFKRYA_					0	0	0			REV__SARS2|p.P399L|1|0.47|ENSG00000104835|chr19:38916279-38916279|G/A|missense_variant	REV__SARS2|p.P399L|1|0.47|ENSG00000104835|chr19:38916279-38916279|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	371.9293518066406	3	371.529346	1111.56621	0.57134	0.00021227	-0.72195	-0.00026822	-0.15061	-5.5957E-05	371.5290392629475	44.111	0.45511	44.88	44.631	45.086	0.76909					14	8	2	0	0	0	0.68382	1	16486	16486		8.4443	2.2525	1	2574800	+		1096	17343	707	717	1078	1078					0.01488841471973501
AEIDFKRYA	9	Unmodified	_AEIDFKRYA_					0	0	0			REV__SARS2|p.P399L|1|0.47|ENSG00000104835|chr19:38916279-38916279|G/A|missense_variant	REV__SARS2|p.P399L|1|0.47|ENSG00000104835|chr19:38916279-38916279|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	371.529346	1111.56621	0.91072	0.00033836	-0.83664	-0.00031083	0.074082	2.7524E-05	371.52897315883024	44.911	0.50651	44.911	44.676	45.183	0	0.015547	-7.4928E-05	NaN	8.4443	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1957100	+		1097	17343	707	717							0.01488841471973501
AEIDFKRYA	9	Unmodified	_AEIDFKRYA_					0	0	0			REV__SARS2|p.P399L|1|0.47|ENSG00000104835|chr19:38916279-38916279|G/A|missense_variant	REV__SARS2|p.P399L|1|0.47|ENSG00000104835|chr19:38916279-38916279|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	371.529346	1111.56621	0.57134	0.00021227	-0.72195	-0.00026822	-0.15061	-5.5957E-05	371.5290392629475	44.111	0.45511	44.88	44.631	45.086	0.76909	-0.015547	5.2902E-05	NaN	8.4443	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2574800	+		1098	17343	707	717							0.01488841471973501
AEIDGAKSEL	10	Unmodified	_AEIDGAKSEL_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1636962890625	2	516.764029	1031.5135	-1.0821	-0.00055917	0.36006	0.00018607	-0.722	-0.0003731	516.7641378451406	33.317	0.50826	34.069	33.84	34.348	0.75225					22	9	3	0	0	0	0.097312	1	11930	11930		88.364	32.861	1	19493000			1099	3109	708	718	1079	1079					-0.0009916138151311316
AEIDLRQGRL	10	Unmodified	_AEIDLRQGRL_					0	0	0		nc|ENSG00000133316|Q6RFH5-2|WDR74;ENSG00000133316|ENST00000278856|WDR74	nc|ENSG00000133316|Q6RFH5-2|WDR74	nc|ENSG00000133316|Q6RFH5-2|WDR74	MULTI-SECPEP	A375_MHC_IP_R1	1	391.2913818359375	3	390.891166	1169.65167	0.72662	0.00028403	-0.31685	-0.00012385	0.40977	0.00016017	390.89106159166204	44.849	0.71125	44.849	44.523	45.234	0					26	13	3	0	0	0	0.39465	1	15665	15665		49.742	28.871	1	5779400			1100	4503	709	719	1080	1080					0.07363006657601545
AEIDLRQGRL	10	Unmodified	_AEIDLRQGRL_					0	0	0		nc|ENSG00000133316|Q6RFH5-2|WDR74;ENSG00000133316|ENST00000278856|WDR74	nc|ENSG00000133316|Q6RFH5-2|WDR74	nc|ENSG00000133316|Q6RFH5-2|WDR74	MULTI-SECPEP	A375_MHC_IP_R2	2	391.2912902832031	3	390.891166	1169.65167	0.011176	4.3686E-06	-0.14653	-5.7275E-05	-0.13535	-5.2907E-05	390.8911121844123	43.988	0.60786	44.757	44.53	45.138	0.7691					18	11	2	0	0	0	0.51228	1	16413	16413		49.742	20.305	1	5321700			1101	4503	709	719	1081	1081					0.07363006657601545
AEIDLRQGRLL	11	Unmodified	_AEIDLRQGRLL_					0	0	0		nc|ENSG00000133316|Q6RFH5-2|WDR74;ENSG00000133316|ENST00000278856|WDR74	nc|ENSG00000133316|Q6RFH5-2|WDR74	nc|ENSG00000133316|Q6RFH5-2|WDR74	MULTI-MSMS	A375_MHC_IP_R2	2	428.9856872558594	3	428.585854	1282.73573	-0.14489	-6.2096E-05	-0.34963	-0.00014985	-0.49452	-0.00021194	428.58568793367755	63.496	0.40743	64.237	63.987	64.394	0.74023					12	7	2	0	0	0	0.62672	1	24051	24051		21.241	15.007	1	1814200			1102	4503	710	720	1082	1082					0.10567537754513978
AEIDSIHQL	9	Unmodified	_AEIDSIHQL_					0	0	0		ENST00000503692.5_1_4:4422578-4426973:-|nuORF;ENSG00000168818|ENST00000306200|STX18	ENST00000503692.5_1_4:4422578-4426973:-|nuORF	ENST00000503692.5_1_4:4422578-4426973:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	513.666259765625	2	513.266739	1024.51892	-0.34866	-0.00017895	-0.081729	-4.1949E-05	-0.43039	-0.0002209	513.2667232054748	51.859	1.5731	51.859	51.475	53.048	0					64	30	4	0	0	0	0.011066	1	18365	18365		114.2	60.369	1	46204000			1103	7350	711	721	1083	1083					0.007645622009476938
AEIDSIHQL	9	Unmodified	_AEIDSIHQL_					0	0	0		ENST00000503692.5_1_4:4422578-4426973:-|nuORF;ENSG00000168818|ENST00000306200|STX18	ENST00000503692.5_1_4:4422578-4426973:-|nuORF	ENST00000503692.5_1_4:4422578-4426973:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	512.7008666992188	2	513.266739	1024.51892	-0.88759	-0.00045557	-0.097488	-5.0037E-05	-0.98508	-0.00050561	513.2667507356563	51.165	1.319	51.918	51.461	52.78	0.75305					59	25	4	0	0	0	0.0092511	2	19227	19216;19227		103.42	40.847	1	40257000			1104	7350	711	721	1084;1085	1085					0.007645622009476938
AEIEAIFTKY	10	Unmodified	_AEIEAIFTKY_					0	0	0		ENST00000512858.1_1_4:88986866-88996843:+|nuORF;nc|ENSG00000118762|Q13563-3|PKD2;ENSG00000118762|ENST00000237596|PKD2	ENST00000512858.1_1_4:88986866-88996843:+|nuORF	ENST00000512858.1_1_4:88986866-88996843:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	593.2130737304688	2	592.813522	1183.61249	-0.22919	-0.00013586	0.58786	0.00034849	0.35868	0.00021263	592.8132651432189	88.723	0.60975	88.723	88.46	89.069	0					27	11	4	0	0	0	0.3907	1	32575	32575		68.76	35.974	1	3604200			1105	3558	712	722	1086	1086					0.02802861583381855
AEIEAIFTKY	10	Unmodified	_AEIEAIFTKY_					0	0	0		ENST00000512858.1_1_4:88986866-88996843:+|nuORF;nc|ENSG00000118762|Q13563-3|PKD2;ENSG00000118762|ENST00000237596|PKD2	ENST00000512858.1_1_4:88986866-88996843:+|nuORF	ENST00000512858.1_1_4:88986866-88996843:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	593.71533203125	2	592.813522	1183.61249	-0.49586	-0.00029395	0.62774	0.00037213	0.13187	7.8177E-05	592.8133373527068	87.985	0.60836	88.717	88.418	89.026	0.7318					30	11	4	0	0	0	0.17879	1	33479	33479		51.415	34.302	1	4560500			1106	3558	712	722	1087	1087					0.02802861583381855
AEIEDIRVL	9	Unmodified	_AEIEDIRVL_					0	0	0		nc|ENSG00000138182|Q96Q89-4|KIF20B;KIF20B|p.E1695Gfs*11|1|0.6|ENSG00000138182|chr10:89768376-89768377|-/A|frameshift_variant;nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;KIF20B|p.I1004Rfs*13|1|0.39|ENSG00000138182|chr10:89737851-89737852|AT/-|frameshift_variant	nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-4|KIF20B	MULTI-SECPEP	A375_MHC_IP_R1	1	529.6978759765625	2	529.298039	1056.58152	-0.37151	-0.00019664	-1.9656	-0.0010404	-2.3371	-0.001237	529.2979434662848	78.704	1.0145	78.704	78.403	79.418	0					43	19	4	0	0	0	0.053555	1	28686	28686		80.676	46.274	1	8877300			1107	14633	713	723	1088	1088					0.055497082691545074
AEIEDIRVL	9	Unmodified	_AEIEDIRVL_					0	0	0		nc|ENSG00000138182|Q96Q89-4|KIF20B;KIF20B|p.E1695Gfs*11|1|0.6|ENSG00000138182|chr10:89768376-89768377|-/A|frameshift_variant;nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;KIF20B|p.I1004Rfs*13|1|0.39|ENSG00000138182|chr10:89737851-89737852|AT/-|frameshift_variant	nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-4|KIF20B	MULTI-MSMS	A375_MHC_IP_R2	2	529.6975708007812	2	529.298039	1056.58152	-0.56714	-0.00030019	-2.5707	-0.0013606	-3.1378	-0.0016608	529.2978161369886	77.928	0.9193	78.671	78.365	79.285	0.74293					42	17	4	0	0	0	0.033808	1	29546	29546		71.708	35.581	1	6415500			1108	14633	713	723	1089	1089					0.055497082691545074
AEIEEDKARRI	11	Unmodified	_AEIEEDKARRI_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	A375_MHC_IP_R1	1	443.6612854003906	3	443.908886	1328.70483	-0.20366	-9.0405E-05	0.02355	1.0454E-05	-0.18011	-7.9951E-05	443.9089928144407	19.495	0.35642	19.495	19.368	19.725	0					14	6	4	0	0	0	0.47047	2	4869	4866;4869		27.129	10.478	1	6307700			1109	9866	714	724	1090;1091	1091					0.05362339649605019
AEIEEDKARRI	11	Unmodified	_AEIEEDKARRI_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MATCH	A375_MHC_IP_R2	2		3	443.908886	1328.70483	-0.632	-0.00028055	-0.63626	-0.00028244	-1.2683	-0.00056299	443.9087543896139	18.905	0.13086	19.508	19.452	19.583	0.60308	0.0064618	-0.00059346	NaN	27.129	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8780400			1110	9866	714	724							0.05362339649605019
AEIEFTHNV	9	Unmodified	_AEIEFTHNV_					0	0	0			REV__EPHA6|p.Y505H|1|0.26|ENSG00000080224|chr3:97244194-97244194|T/C|missense_variant	REV__EPHA6|p.Y505H|1|0.26|ENSG00000080224|chr3:97244194-97244194|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	530.6766967773438	2	530.258914	1058.50327	-0.63454	-0.00033647	4.3045	0.0022825	3.67	0.001946	530.2608918588336	74.4	0.7105	75.137	74.757	75.467	0.73752					21	13	2	0	0	0	0.29981	1	28152	28152		30.637	3.7529	1	1379200	+		1111	26583	715	725	1092	1092					-0.023637243160919752
AEIEGLTDSW	10	Unmodified	_AEIEGLTDSW_					0	0	0		nc|ENSG00000112319|O95677-5|EYA4;nc|ENSG00000112319|O95677-2|EYA4;nc|ENSG00000112319|O95677-4|EYA4;ENSG00000112319|ENST00000355286|EYA4	nc|ENSG00000112319|O95677-5|EYA4	nc|ENSG00000112319|O95677-5|EYA4	MULTI-SECPEP	A375_MHC_IP_R2	2	561.1610717773438	2	560.761486	1119.50842	-0.51446	-0.00028849	-0.41111	-0.00023053	-0.92556	-0.00051902	560.7615386922326	101.24	0.76208	102	101.7	102.46	0.76429					19	14	2	0	0	0	0.6774	1	38395	38395		27.629	20.906	1	1575400			1112	3077	716	726	1093	1093					-0.046554652441500366
AEIEGLTDSW	10	Unmodified	_AEIEGLTDSW_					0	0	0		nc|ENSG00000112319|O95677-5|EYA4;nc|ENSG00000112319|O95677-2|EYA4;nc|ENSG00000112319|O95677-4|EYA4;ENSG00000112319|ENST00000355286|EYA4	nc|ENSG00000112319|O95677-5|EYA4	nc|ENSG00000112319|O95677-5|EYA4	MULTI-MATCH	A375_MHC_IP_R1	1		2	560.761486	1119.50842	-0.41826	-0.00023454	-0.20369	-0.00011422	-0.62195	-0.00034877	560.7614976498838	101.85	0.45586	101.85	101.6	102.05	0	-0.07775	9.7156E-05	NaN	27.629	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1019700			1113	3077	716	726							-0.046554652441500366
AEIEHFIHL	9	Unmodified	_AEIEHFIHL_					0	0	0		ENSG00000132681|ENST00000368081|ATP1A4	ENSG00000132681|ENST00000368081|ATP1A4	ENSG00000132681|ENST00000368081|ATP1A4	MULTI-MSMS	A375_MHC_IP_R2	2	370.5981140136719	3	370.197708	1107.57129	0.39406	0.00014588	0.68868	0.00025495	1.0827	0.00040083	370.1981356135398	69.974	0.61081	70.708	70.437	71.048	0.73421					17	11	2	0	0	0	0.7235	1	26532	26532		4.897	0	1	2070300			1114	4440	717	727	1094	1094					0.021811453345662812
AEIEHFIHL	9	Unmodified	_AEIEHFIHL_					0	0	0		ENSG00000132681|ENST00000368081|ATP1A4	ENSG00000132681|ENST00000368081|ATP1A4	ENSG00000132681|ENST00000368081|ATP1A4	MULTI-MATCH	A375_MHC_IP_R1	1		3	370.197708	1107.57129	0.37225	0.00013781	0.79624	0.00029476	1.1685	0.00043257	370.19784843018226	70.795	0.4595	70.795	70.494	70.953	0	0.043679	4.3974E-05	NaN	4.897	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1345500			1115	4440	717	727							0.021811453345662812
AEIEIMKKL	9	Oxidation (M)	_AEIEIM(Oxidation (M))KKL_		AEIEIM(1)KKL		AEIEIM(42)KKL	0	0	1		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000550858.1_1_12:42681476-42682067:+|nuORF;ENST00000496495.1_1_3:185393074-185393625:-|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-MSMS	A375_MHC_IP_R1	1	364.610595703125	3	364.210737	1089.61038	0.23656	8.6159E-05	-0.40076	-0.00014596	-0.1642	-5.9802E-05	364.2105679154414	33.522	0.65855	33.522	33.04	33.698	0					35	12	4	0	0	0	0.14659	1	10911	10911		42.312	20.776	1	161920000			1116	1571	718	728	1095	1095		47			0.06916109573921858
AEIEIMKKL	9	Oxidation (M)	_AEIEIM(Oxidation (M))KKL_		AEIEIM(1)KKL		AEIEIM(42)KKL	0	0	1		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000550858.1_1_12:42681476-42682067:+|nuORF;ENST00000496495.1_1_3:185393074-185393625:-|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-MSMS	A375_MHC_IP_R1	1	364.6106262207031	3	364.210737	1089.61038	0.22689	8.2637E-05	-0.29987	-0.00010922	-0.072977	-2.6579E-05	364.21056421182703	33.976	0.85922	33.976	33.648	34.507	0					46	16	4	0	0	0	0.14659	1	11147	11147		42.312	13.818	1	116840000			1117	1571	718	728	1096	1096		47			0.06916109573921858
AEIEIMKKL	9	Oxidation (M)	_AEIEIM(Oxidation (M))KKL_		AEIEIM(1)KKL		AEIEIM(62)KKL	0	0	1		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000550858.1_1_12:42681476-42682067:+|nuORF;ENST00000496495.1_1_3:185393074-185393625:-|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-SECPEP	A375_MHC_IP_R1	1	546.2342529296875	2	545.812467	1089.61038	-0.41449	-0.00022624	-0.19611	-0.00010704	-0.6106	-0.00033327	545.812430737933	54.389	0.55706	54.389	54.163	54.72	0					24	10	3	0	0	0	0.16595	1	19462	19462		61.602	19.762	1	9384400			1118	1571	718	728	1097	1097		47			0.06916109573921858
AEIEIMKKL	9	Oxidation (M)	_AEIEIM(Oxidation (M))KKL_		AEIEIM(1)KKL		AEIEIM(62)KKL	0	0	1		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000550858.1_1_12:42681476-42682067:+|nuORF;ENST00000496495.1_1_3:185393074-185393625:-|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-SECPEP	A375_MHC_IP_R1	1	546.2122192382812	2	545.812467	1089.61038	-0.51408	-0.00028059	-0.28736	-0.00015685	-0.80145	-0.00043744	545.8124293659348	33.946	0.60494	33.946	33.698	34.303	0					31	11	4	0	0	0	0.074405	1	11198	11198		61.602	61.602	1	28495000			1119	1571	718	728	1098	1098		47			0.06916109573921858
AEIEIMKKL	9	Oxidation (M)	_AEIEIM(Oxidation (M))KKL_		AEIEIM(1)KKL		AEIEIM(97)KKL	0	0	1		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000550858.1_1_12:42681476-42682067:+|nuORF;ENST00000496495.1_1_3:185393074-185393625:-|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-SECPEP	A375_MHC_IP_R1	1	546.212158203125	2	545.812467	1089.61038	-0.5117	-0.00027929	-0.8105	-0.00044238	-1.3222	-0.00072167	545.8123606324749	33.522	0.65843	33.522	33.09	33.748	0					37	12	4	0	0	0	0.030244	1	10955	10955		96.936	69.307	1	41037000			1120	1571	718	728	1099	1099		47			0.06916109573921858
AEIEIMKKL	9	Oxidation (M)	_AEIEIM(Oxidation (M))KKL_		AEIEIM(1)KKL		AEIEIM(56)KKL	0	0	1		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000550858.1_1_12:42681476-42682067:+|nuORF;ENST00000496495.1_1_3:185393074-185393625:-|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-SECPEP	A375_MHC_IP_R1	1	546.2120971679688	2	545.812467	1089.61038	-0.56051	-0.00030593	0.032638	1.7814E-05	-0.52787	-0.00028812	545.8123638395381	36.19	2.8995	36.19	35.319	38.218	0					124	56	3	0	0	0	0.23894	1	12193	12193		55.503	55.503	1	4675900			1121	1571	718	728	1100	1100		47			0.06916109573921858
AEIEIMKKL	9	Oxidation (M)	_AEIEIM(Oxidation (M))KKL_		AEIEIM(1)KKL		AEIEIM(42)KKL	0	0	1		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000550858.1_1_12:42681476-42682067:+|nuORF;ENST00000496495.1_1_3:185393074-185393625:-|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-MSMS	A375_MHC_IP_R2	2	364.92303466796875	3	364.210737	1089.61038	-0.087619	-3.1912E-05	-0.30983	-0.00011284	-0.39745	-0.00014476	364.2106104462742	32.755	0.81417	33.492	33.01	33.825	0.73691					42	15	5	0	0	0	0.14659	2	11688	11645;11688		42.312	23.591	1	132570000			1122	1571	718	728	1101;1102	1102		47			0.06916109573921858
AEIEIMKKL	9	Oxidation (M)	_AEIEIM(Oxidation (M))KKL_		AEIEIM(1)KKL		AEIEIM(50)KKL	0	0	1		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000550858.1_1_12:42681476-42682067:+|nuORF;ENST00000496495.1_1_3:185393074-185393625:-|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-MSMS	A375_MHC_IP_R2	2	364.2702331542969	3	364.210737	1089.61038	-0.19208	-6.9958E-05	-0.14003	-5.1E-05	-0.33211	-0.00012096	364.21064429222344	33.112	0.91431	33.865	33.635	34.55	0.75225					47	17	5	0	0	0	0.10637	1	11798	11798		49.527	27.99	1	130660000			1123	1571	718	728	1103	1103		47			0.06916109573921858
AEIEIMKKL	9	Oxidation (M)	_AEIEIM(Oxidation (M))KKL_		AEIEIM(1)KKL		AEIEIM(42)KKL	0	0	1		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000550858.1_1_12:42681476-42682067:+|nuORF;ENST00000496495.1_1_3:185393074-185393625:-|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-MSMS	A375_MHC_IP_R2	2	364.6105651855469	3	364.210737	1089.61038	-0.28162	-0.00010257	0.20354	7.4131E-05	-0.078083	-2.8439E-05	364.21080115569674	35.882	2.7385	36.645	35.425	38.164	0.76338					130	53	4	0	0	0	0.14659	1	13359	13359		42.312	16.292	1	18636000			1124	1571	718	728	1104	1104		47			0.06916109573921858
AEIEIMKKL	9	Oxidation (M)	_AEIEIM(Oxidation (M))KKL_		AEIEIM(1)KKL		AEIEIM(53)KKL	0	0	1		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000550858.1_1_12:42681476-42682067:+|nuORF;ENST00000496495.1_1_3:185393074-185393625:-|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-SECPEP	A375_MHC_IP_R2	2	546.2343139648438	2	545.812467	1089.61038	-1.3375	-0.00073	0.019267	1.0516E-05	-1.3182	-0.00071948	545.8125927874889	53.48	0.76781	54.231	53.893	54.661	0.75105					32	14	3	0	0	0	0.27114	1	20160	20160		53.404	25.775	1	12212000			1125	1571	718	728	1105	1105		47			0.06916109573921858
AEIEIMKKL	9	Oxidation (M)	_AEIEIM(Oxidation (M))KKL_		AEIEIM(1)KKL		AEIEIM(87)KKL	0	0	1		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000550858.1_1_12:42681476-42682067:+|nuORF;ENST00000496495.1_1_3:185393074-185393625:-|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-SECPEP	A375_MHC_IP_R2	2	546.2119750976562	2	545.812467	1089.61038	-0.86086	-0.00046987	-0.74112	-0.00040451	-1.602	-0.00087438	545.8124658389198	32.756	1.0677	33.493	32.96	34.028	0.73692					39	20	4	0	0	0	0.030244	1	11670	11670		87.258	87.258	1	32372000			1126	1571	718	728	1106	1106		47			0.06916109573921858
AEIEIMKKL	9	Oxidation (M)	_AEIEIM(Oxidation (M))KKL_		AEIEIM(1)KKL		AEIEIM(50)KKL	0	0	1		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000550858.1_1_12:42681476-42682067:+|nuORF;ENST00000496495.1_1_3:185393074-185393625:-|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-SECPEP	A375_MHC_IP_R2	2	546.2117309570312	2	545.812467	1089.61038	-1.0349	-0.00056484	-0.17939	-9.7911E-05	-1.2142	-0.00066275	545.8125012048118	36.146	2.486	36.917	35.634	38.12	0.7709					80	48	2	0	0	0	0.30925	1	13171	13171		49.554	49.554	1	4094700			1127	1571	718	728	1107	1107		47			0.06916109573921858
AEIEIMKKL	9	Oxidation (M)	_AEIEIM(Oxidation (M))KKL_		AEIEIM(1)KKL		AEIEIM(77)KKL	0	0	1		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000550858.1_1_12:42681476-42682067:+|nuORF;ENST00000496495.1_1_3:185393074-185393625:-|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-SECPEP	A375_MHC_IP_R2	2	545.7014770507812	2	545.812467	1089.61038	-0.95795	-0.00052286	0.17147	9.3589E-05	-0.78649	-0.00042927	545.8125402501751	33.114	0.56082	33.866	33.635	34.196	0.75225					19	10	2	0	0	0	0.042716	1	11808	11808		76.825	76.825	1	31759000			1128	1571	718	728	1108	1108		47			0.06916109573921858
AEIEIMKKL	9	Oxidation (M)	_AEIEIM(Oxidation (M))KKL_					0	0	1		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000550858.1_1_12:42681476-42682067:+|nuORF;ENST00000496495.1_1_3:185393074-185393625:-|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-MATCH	A375_MHC_IP_R1	1		3	364.210737	1089.61038	0.3228	0.00011757	-0.24528	-8.9335E-05	0.077513	2.8231E-05	364.21055770003994	54.39	1.1139	54.39	54.063	55.177	0	0.082905	-0.00015828	NaN	42.312	60	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38894000			1129	1571	718	728				47			0.06916109573921858
AEIEIMKKL	9	Unmodified	_AEIEIMKKL_					0	0	0		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000550858.1_1_12:42681476-42682067:+|nuORF;ENST00000496495.1_1_3:185393074-185393625:-|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-MSMS	A375_MHC_IP_R1	1	359.27899169921875	3	358.879099	1073.61547	0.21805	7.8255E-05	-0.43674	-0.00015674	-0.21869	-7.8484E-05	358.87899675916924	54.39	1.318	54.39	54.063	55.381	0					79	25	6	0	0	0	0.04447	2	19356	19356;19583		53.317	24.822	1	208320000			1130	1571	718	729	1109;1110	1109					0.08160413436553426
AEIEIMKKL	9	Unmodified	_AEIEIMKKL_					0	0	0		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000550858.1_1_12:42681476-42682067:+|nuORF;ENST00000496495.1_1_3:185393074-185393625:-|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-SECPEP	A375_MHC_IP_R1	1	538.2145385742188	2	537.81501	1073.61547	-0.55442	-0.00029818	-0.42445	-0.00022828	-0.97888	-0.00052645	537.8147424380004	54.389	1.0127	54.389	54.063	55.075	0					52	19	4	0	0	0	0.011308	1	19368	19368		117.76	73.902	1	71630000			1131	1571	718	729	1111	1111					0.08160413436553426
AEIEIMKKL	9	Unmodified	_AEIEIMKKL_					0	0	0		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000550858.1_1_12:42681476-42682067:+|nuORF;ENST00000496495.1_1_3:185393074-185393625:-|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-MSMS	A375_MHC_IP_R2	2	359.2790222167969	3	358.879099	1073.61547	-0.74971	-0.00026906	0.11781	4.2278E-05	-0.63191	-0.00022678	358.87918612464256	53.472	1.5288	54.223	53.842	55.371	0.75105					78	29	5	0	0	0	0.033557	2	20115	20115;20352		57.249	31.228	1	249730000			1132	1571	718	729	1112;1113	1112					0.08160413436553426
AEIEIMKKL	9	Unmodified	_AEIEIMKKL_					0	0	0		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000550858.1_1_12:42681476-42682067:+|nuORF;ENST00000496495.1_1_3:185393074-185393625:-|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-SECPEP	A375_MHC_IP_R2	2	538.2142333984375	2	537.81501	1073.61547	-1.4158	-0.00076141	0.28352	0.00015248	-1.1322	-0.00060893	537.815219135282	53.473	0.66401	54.224	53.893	54.557	0.75105					42	12	5	0	0	0	0.030244	1	20125	20125		96.936	67.095	1	66440000			1133	1571	718	729	1114	1114					0.08160413436553426
AEIEIVKDL	9	Unmodified	_AEIEIVKDL_					0	0	0		nc|ENSG00000122884|P13674-3|P4HA1;nc|ENSG00000122884|P13674-2|P4HA1;ENSG00000122884|ENST00000394890|P4HA1	nc|ENSG00000122884|P13674-3|P4HA1	nc|ENSG00000122884|P13674-3|P4HA1	MULTI-MSMS	A375_MHC_IP_R2	2	515.6940307617188	2	515.294965	1028.57538	-0.71627	-0.00036909	0.0076868	3.9609E-06	-0.70858	-0.00036513	515.2948581766598	78.515	0.9651	79.26	78.728	79.693	0.74473					42	18	4	0	0	0	0.0092755	1	29759	29759		103.82	21.933	1	33457000			1134	3814	719	730	1115	1115					0.06223190037621862
AEIEIVKEEF	10	Unmodified	_AEIEIVKEEF_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	A375_MHC_IP_R2	2	604.2163696289062	2	603.816261	1205.61797	-0.45353	-0.00027385	-0.4215	-0.00025451	-0.87503	-0.00052835	603.8160149692272	76.819	0.50397	77.561	77.403	77.907	0.74203					14	9	2	0	0	0	0.1863	1	29195	29195		57.108	25.839	1	1980000			1135	1262	720	731	1116	1116					0.023385403751944978
AEIEIVKEEF	10	Unmodified	_AEIEIVKEEF_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MATCH	A375_MHC_IP_R1	1		2	603.816261	1205.61797	-0.3314	-0.0002001	-2.4145	-0.0014579	-2.7459	-0.001658	603.8151776855176	77.613	0.40749	77.613	77.386	77.793	0	0.026023	-0.0016966	NaN	57.108	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1695000			1136	1262	720	731							0.023385403751944978
AEIEKEYEY	9	Unmodified	_AEIEKEYEY_					0	0	0		ENSG00000196814|ENST00000361171|MVB12B	ENSG00000196814|ENST00000361171|MVB12B	ENSG00000196814|ENST00000361171|MVB12B	MULTI-SECPEP	A375_MHC_IP_R1	1	587.6688842773438	2	587.269144	1172.52373	-0.50007	-0.00029367	-0.037851	-2.2229E-05	-0.53792	-0.0003159	587.2689855202735	36.474	0.56118	36.474	36.133	36.695	0					20	10	3	0	0	0	0.025037	1	12208	12208		110.55	42.472	1	4485700			1137	9086	721	732	1117	1117					-0.05562598446931588
AEIEKEYEY	9	Unmodified	_AEIEKEYEY_					0	0	0		ENSG00000196814|ENST00000361171|MVB12B	ENSG00000196814|ENST00000361171|MVB12B	ENSG00000196814|ENST00000361171|MVB12B	MULTI-SECPEP	A375_MHC_IP_R2	2	587.6689453125	2	587.269144	1172.52373	-0.74052	-0.00043488	0.62754	0.00036854	-0.11297	-6.6346E-05	587.269338255733	35.816	0.45798	36.58	36.283	36.741	0.76338					18	8	3	0	0	0	0.027055	1	13007	13007		110.79	45.558	1	5421400			1138	9086	721	732	1118	1118					-0.05562598446931588
AEIEKLGQKY	10	Unmodified	_AEIEKLGQKY_					0	0	0		ENSG00000119616|ENST00000341162|FCF1	ENSG00000119616|ENST00000341162|FCF1	ENSG00000119616|ENST00000341162|FCF1	MULTI-MSMS	A375_MHC_IP_R1	1	393.9440002441406	3	393.552039	1177.63429	0.15417	6.0672E-05	-0.22973	-9.0412E-05	-0.075568	-2.974E-05	393.5519156727821	28.617	0.65746	28.617	28.339	28.996	0					32	12	4	0	0	0	0.0038254	2	8858	8831;8858		85.764	36.237	1	52605000			1139	3605	722	733	1119;1120	1120					0.052576663319541694
AEIEKLGQKY	10	Unmodified	_AEIEKLGQKY_					0	0	0		ENSG00000119616|ENST00000341162|FCF1	ENSG00000119616|ENST00000341162|FCF1	ENSG00000119616|ENST00000341162|FCF1	MULTI-MSMS	A375_MHC_IP_R2	2	393.95196533203125	3	393.552039	1177.63429	-0.23417	-9.2156E-05	-0.1754	-6.903E-05	-0.40957	-0.00016119	393.5519647831915	27.901	0.60838	28.58	28.351	28.96	0.67857					31	11	4	0	0	0	0.0038254	2	9568	9568;9611		85.764	38.032	1	44104000			1140	3605	722	733	1121;1122	1121					0.052576663319541694
AEIEKLGQKY	10	Unmodified	_AEIEKLGQKY_					0	0	0		ENSG00000119616|ENST00000341162|FCF1	ENSG00000119616|ENST00000341162|FCF1	ENSG00000119616|ENST00000341162|FCF1	MULTI-SECPEP	A375_MHC_IP_R2	2	590.2117919921875	2	589.824421	1177.63429	-0.62284	-0.00036737	0.11531	6.8014E-05	-0.50753	-0.00029935	589.8244759330743	27.915	0.60867	28.593	28.401	29.01	0.67857					33	11	4	0	0	0	0.011207	1	9612	9612		143.21	76.757	1	44034000			1141	3605	722	733	1123	1123					0.052576663319541694
AEIEMRGML	9	Unmodified	_AEIEMRGML_					0	0	0			REV__ENSG00000140326|ENST00000356231|CDAN1	REV__ENSG00000140326|ENST00000356231|CDAN1	MULTI-MSMS	A375_MHC_IP_R1	1	525.6596069335938	2	525.259545	1048.50454	-0.41925	-0.00022021	0.89538	0.00047031	0.47613	0.00025009	525.2600129004853	101.48	0.70702	101.48	101.09	101.8	0					21	13	2	0	0	0	0.13797	1	37296	37296		43.858	11.553	1	2069200	+		1142	19204	723	734	1124	1124					-0.01777549543180612
AEIEMRGML	9	Unmodified	_AEIEMRGML_					0	0	0			REV__ENSG00000140326|ENST00000356231|CDAN1	REV__ENSG00000140326|ENST00000356231|CDAN1	MULTI-MSMS	A375_MHC_IP_R2	2	525.659912109375	2	525.259545	1048.50454	-0.32822	-0.0001724	0.94127	0.00049441	0.61305	0.00032201	525.2599948843413	100.76	0.56562	101.52	101.19	101.75	0.76278					18	10	2	0	0	0	0.29981	1	38191	38191		30.637	10.183	1	1793100	+		1143	19204	723	734	1125	1125					-0.01777549543180612
AEIEMRGML	9	Unmodified	_AEIEMRGML_					0	0	0			REV__ENSG00000140326|ENST00000356231|CDAN1	REV__ENSG00000140326|ENST00000356231|CDAN1	MULTI-SECPEP	A375_MHC_IP_R2	2	524.6844482421875	2	525.259545	1048.50454	-0.32822	-0.0001724	0.94127	0.00049441	0.61305	0.00032201	525.2599948843413	100.76	0.56562	101.52	101.19	101.75	0.76278					18	10	2	0	0	0	0.71341	1	38187	38187		18.146	14.202	1	1793100	+		1144	19204	723	734	1126	1126					-0.01777549543180612
AEIEMRGML	9	Unmodified	_AEIEMRGML_					0	0	0			REV__ENSG00000140326|ENST00000356231|CDAN1	REV__ENSG00000140326|ENST00000356231|CDAN1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	525.259545	1048.50454	-0.41925	-0.00022021	0.89538	0.00047031	0.47613	0.00025009	525.2600129004853	101.48	0.70702	101.48	101.09	101.8	0	-0.019247	-2.3359E-05	NaN	43.858	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2069200	+		1145	19204	723	734							-0.01777549543180612
AEIENIKEL	9	Unmodified	_AEIENIKEL_					0	0	0		nc|ENSG00000166352|Q86VG3-2|IFTAP;ENSG00000166352|ENST00000334307|IFTAP	nc|ENSG00000166352|Q86VG3-2|IFTAP	nc|ENSG00000166352|Q86VG3-2|IFTAP	MULTI-SECPEP	A375_MHC_IP_R1	1	530.1901245117188	2	529.790047	1057.56554	-0.37907	-0.00020083	0.02475	1.3112E-05	-0.35432	-0.00018772	529.789958820841	53.937	0.7082	53.937	53.605	54.314	0					27	13	3	0	0	0	0.063333	1	19206	19206		75.571	23.941	1	10869000			1146	7066	724	735	1127	1127					0.03906002032226752
AEIENIKEL	9	Unmodified	_AEIENIKEL_					0	0	0		nc|ENSG00000166352|Q86VG3-2|IFTAP;ENSG00000166352|ENST00000334307|IFTAP	nc|ENSG00000166352|Q86VG3-2|IFTAP	nc|ENSG00000166352|Q86VG3-2|IFTAP	MULTI-SECPEP	A375_MHC_IP_R2	2	529.9622802734375	2	529.790047	1057.56554	-1.1669	-0.00061822	0.31255	0.00016559	-0.85436	-0.00045263	529.7900649273246	53.161	0.71091	53.912	53.538	54.249	0.75105					25	13	3	0	0	0	0.011093	1	20083	20083		117.84	25.184	1	8667600			1147	7066	724	735	1128	1128					0.03906002032226752
AEIENIKELC	10	Unmodified	_AEIENIKELC_					0	0	0		nc|ENSG00000166352|Q86VG3-2|IFTAP;ENSG00000166352|ENST00000334307|IFTAP	nc|ENSG00000166352|Q86VG3-2|IFTAP	nc|ENSG00000166352|Q86VG3-2|IFTAP	MULTI-SECPEP	A375_MHC_IP_R2	2	387.9401550292969	3	387.865518	1160.57472	-0.4966	-0.00019261	0.89174	0.00034588	0.39514	0.00015326	387.8661106960706	22.917	0.25493	23.547	23.368	23.623	0.63014					6	4	2	0	0	0	0.92445	1	7262	7262		14.218	14.218	1	2219100			1148	7066	725	736	1129	1129					0.0008602732625604403
AEIEPPKLL	9	Unmodified	_AEIEPPKLL_					0	0	0		nc|ENSG00000091157|Q9Y4E6-2|WDR7;ENSG00000091157|ENST00000254442|WDR7	nc|ENSG00000091157|Q9Y4E6-2|WDR7	nc|ENSG00000091157|Q9Y4E6-2|WDR7	MULTI-SECPEP	A375_MHC_IP_R1	1	505.6380920410156	2	505.30005	1008.58555	-0.36505	-0.00018446	-0.028778	-1.4541E-05	-0.39383	-0.000199	505.29997390568525	77.52	0.66031	77.52	77.184	77.844	0					19	12	2	0	0	0	0.59098	1	28272	28272		21.537	1.0834	1	1258400			1149	1973	726	737	1130	1130					0.0815979776284621
AEIEQKIKEY	10	Unmodified	_AEIEQKIKEY_					0	0	0		nc|ENSG00000068028|Q9NS23-9|RASSF1;nc|ENSG00000068028|Q9NS23-4|RASSF1;ENSG00000068028|ENST00000359365|RASSF1;nc|ENSG00000068028|Q9NS23|RASSF1;nc|ENSG00000068028|Q9NS23-5|RASSF1	nc|ENSG00000068028|Q9NS23-9|RASSF1	nc|ENSG00000068028|Q9NS23-9|RASSF1	MULTI-MSMS	A375_MHC_IP_R1	1	417.958984375	3	417.559082	1249.65542	-0.1156	-4.8269E-05	0.078874	3.2935E-05	-0.036724	-1.5334E-05	417.5590049990449	30.658	0.35358	30.658	30.453	30.806	0					15	6	3	0	0	0	0.34817	1	9800	9800		37.251	20.413	1	3079000			1150	1450	727	738	1131	1131					0.04057631640807813
AEIEQKIKEY	10	Unmodified	_AEIEQKIKEY_					0	0	0		nc|ENSG00000068028|Q9NS23-9|RASSF1;nc|ENSG00000068028|Q9NS23-4|RASSF1;ENSG00000068028|ENST00000359365|RASSF1;nc|ENSG00000068028|Q9NS23|RASSF1;nc|ENSG00000068028|Q9NS23-5|RASSF1	nc|ENSG00000068028|Q9NS23-9|RASSF1	nc|ENSG00000068028|Q9NS23-9|RASSF1	MULTI-MSMS	A375_MHC_IP_R2	2	417.958984375	3	417.559082	1249.65542	-0.37591	-0.00015696	-0.062808	-2.6226E-05	-0.43872	-0.00018319	417.5590808906228	29.933	0.45715	30.632	30.434	30.892	0.69872					12	8	2	0	0	0	0.34817	1	10514	10514		37.251	18.911	1	2419600			1151	1450	727	738	1132	1132					0.04057631640807813
AEIFGKVL	8	Unmodified	_AEIFGKVL_					0	0	0		ENSG00000133704|ENST00000256079|IPO8;nc|ENSG00000133704|O15397-2|IPO8	ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	MULTI-SECPEP	A375_MHC_IP_R1	1	439.1628723144531	2	438.763104	875.511654	-0.2138	-9.3807E-05	-0.0046106	-2.0229E-06	-0.21841	-9.583E-05	438.76297269875033	76.92	0.61252	76.92	76.622	77.235	0					22	11	3	0	0	0	0.28442	1	28029	28029		78.728	42.601	1	4060000			1152	4524	728	739	1133	1133					0.06891874391192232
AEIFGKVL	8	Unmodified	_AEIFGKVL_					0	0	0		ENSG00000133704|ENST00000256079|IPO8;nc|ENSG00000133704|O15397-2|IPO8	ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	MULTI-SECPEP	A375_MHC_IP_R2	2	439.1629638671875	2	438.763104	875.511654	-0.29765	-0.0001306	0.2415	0.00010596	-0.05615	-2.4637E-05	438.7631090407317	75.933	0.60811	76.674	76.385	76.994	0.74052					23	11	3	0	0	0	0.6033	1	28813	28813		56.177	20.05	1	3782400			1153	4524	728	739	1134	1134					0.06891874391192232
AEIFGNPNYL	10	Unmodified	_AEIFGNPNYL_					0	0	0		nc|ENSG00000095261|Q16401-2|PSMD5;ENSG00000095261|ENST00000210313|PSMD5	nc|ENSG00000095261|Q16401-2|PSMD5	nc|ENSG00000095261|Q16401-2|PSMD5	MULTI-SECPEP	A375_MHC_IP_R2	2	569.126220703125	2	569.282389	1136.55022	-0.28974	-0.00016495	-0.78296	-0.00044573	-1.0727	-0.00061067	569.7836436858174	103.89	0.45502	104.65	104.4	104.85	0.76428					18	8	3	0	0	0	0.8125	1	39363	39363		18.146	4.2403	1	1362200			1154	2037	729	740	1135	1135					-0.012588647649408813
AEIGDKSWL	9	Unmodified	_AEIGDKSWL_					0	0	0		ENSG00000146070|ENST00000274793|PLA2G7	ENSG00000146070|ENST00000274793|PLA2G7	ENSG00000146070|ENST00000274793|PLA2G7	MULTI-SECPEP	A375_MHC_IP_R1	1	510.2184143066406	2	509.763832	1017.51311	-0.58839	-0.00029994	1.3277	0.00067679	0.73927	0.00037685	509.7641240987681	65.912	0.6602	65.912	65.666	66.326	0					19	12	2	0	0	0	0.60917	1	23911	23911		25.399	1.3787	1	1185400			1155	5602	730	741	1136	1136					0.0050546368928507945
AEIGNKDIKF	10	Unmodified	_AEIGNKDIKF_					0	0	0		ENSG00000163527|ENST00000295770|STT3B;ENST00000463044.1_1_3:31667577-31674651:+|nuORF	ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	MULTI-SECPEP	A375_MHC_IP_R1	1	379.27667236328125	3	378.876634	1133.60807	0.43403	0.00016444	-0.27104	-0.00010269	0.16299	6.1754E-05	378.87655012941616	40.476	0.65976	40.476	40.203	40.863	0					33	12	5	0	0	0	0.17899	1	13895	13895		57.204	24.306	1	19722000			1156	6678	731	742	1137	1137					0.04661397160452907
AEIGNKDIKF	10	Unmodified	_AEIGNKDIKF_					0	0	0		ENSG00000163527|ENST00000295770|STT3B;ENST00000463044.1_1_3:31667577-31674651:+|nuORF	ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	MULTI-SECPEP	A375_MHC_IP_R1	1	568.211181640625	2	567.811313	1133.60807	-0.25617	-0.00014546	-0.25964	-0.00014743	-0.51581	-0.00029288	567.8110907109052	40.468	0.45734	40.468	40.203	40.66	0					19	8	3	0	0	0	0.15653	1	13912	13912		80.896	39.056	1	6708300			1157	6678	731	742	1138	1138					0.04661397160452907
AEIGNKDIKF	10	Unmodified	_AEIGNKDIKF_					0	0	0		ENSG00000163527|ENST00000295770|STT3B;ENST00000463044.1_1_3:31667577-31674651:+|nuORF	ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	MULTI-MSMS	A375_MHC_IP_R2	2	568.2109985351562	2	567.811313	1133.60807	-0.39993	-0.00022709	-1.08	-0.00061326	-1.48	-0.00084035	567.8113264231233	39.619	0.50792	40.394	40.118	40.626	0.77451					26	9	4	0	0	0	0.21149	1	14646	14646		48.073	13.671	1	7377400			1158	6678	731	742	1139	1139					0.04661397160452907
AEIGNKDIKF	10	Unmodified	_AEIGNKDIKF_					0	0	0		ENSG00000163527|ENST00000295770|STT3B;ENST00000463044.1_1_3:31667577-31674651:+|nuORF	ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	MULTI-SECPEP	A375_MHC_IP_R2	2	379.27685546875	3	378.876634	1133.60807	0.050094	1.898E-05	-1.176	-0.00044555	-1.1259	-0.00042657	378.8766196276096	39.673	1.0651	40.448	40.169	41.234	0.77451					52	20	7	0	0	0	0.36543	1	14631	14631		37.251	0.17624	1	24020000			1159	6678	731	742	1140	1140					0.04661397160452907
AEIGNTIERF	10	Unmodified	_AEIGNTIERF_					0	0	0		nc|ENSG00000197429|Q9Y573-2|IPP;ENSG00000197429|ENST00000396478|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	MULTI-SECPEP	A375_MHC_IP_R1	1	575.6800537109375	2	575.29857	1148.58259	-0.22164	-0.00012751	-0.15446	-8.8859E-05	-0.3761	-0.00021637	575.2982485735047	59.091	0.50984	59.091	58.836	59.346	0					25	9	5	0	0	0	0.2729	1	21272	21272		47.732	16.464	1	2203000			1160	9157	732	743	1141	1141					0.014239226380368564
AEIGNTIERF	10	Unmodified	_AEIGNTIERF_					0	0	0		nc|ENSG00000197429|Q9Y573-2|IPP;ENSG00000197429|ENST00000396478|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	575.29857	1148.58259	-0.50089	-0.00028816	-0.012313	-7.0835E-06	-0.51321	-0.00029525	575.799965519653	58.283	0.40903	59.032	58.929	59.338	0.74894	-0.029602	0.00010122	NaN	47.732	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1566900			1161	9157	732	743							0.014239226380368564
AEIGSNIKNL	10	Unmodified	_AEIGSNIKNL_					0	0	0		ENSG00000136631|ENST00000644510|VPS45;nc|ENSG00000136631|Q9NRW7-2|VPS45;ENST00000477558.1_1_1:150049710-150054979:+|nuORF	ENSG00000136631|ENST00000644510|VPS45	ENSG00000136631|ENST00000644510|VPS45	MULTI-SECPEP	A375_MHC_IP_R1	1	529.96240234375	2	529.795663	1057.57677	-0.69389	-0.00036762	-0.40105	-0.00021247	-1.0949	-0.00058009	529.7956688000547	47.029	0.56522	47.029	46.749	47.315	0					17	10	2	0	0	0	0.10905	1	16542	16542		84.522	36.774	1	4731000			1162	4803	733	744	1142	1142					0.05028824126384279
AEIGSNIKNL	10	Unmodified	_AEIGSNIKNL_					0	0	0		ENSG00000136631|ENST00000644510|VPS45;nc|ENSG00000136631|Q9NRW7-2|VPS45;ENST00000477558.1_1_1:150049710-150054979:+|nuORF	ENSG00000136631|ENST00000644510|VPS45	ENSG00000136631|ENST00000644510|VPS45	MULTI-SECPEP	A375_MHC_IP_R2	2	529.96240234375	2	529.795663	1057.57677	-0.50473	-0.00026741	-0.82625	-0.00043774	-1.331	-0.00070515	529.7955028038907	46.166	0.60917	46.931	46.704	47.313	0.76519					18	11	2	0	0	0	0.081287	1	17286	17286		80.676	28.408	1	3465600			1163	4803	733	744	1143	1143					0.05028824126384279
AEIIASHW	8	Unmodified	_AEIIASHW_					0	0	0		ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;ENST00000570934.5_1_17:4098183-4145738:-|nuORF	ENSG00000185722|ENST00000341657|ANKFY1	ENSG00000185722|ENST00000341657|ANKFY1	MULTI-SECPEP	A375_MHC_IP_R1	1	464.1398620605469	2	463.74016	925.465767	-0.21496	-9.9684E-05	-0.39671	-0.00018397	-0.61167	-0.00028365	463.7399605063281	59.529	0.45679	59.529	59.245	59.701	0					16	8	3	0	0	0	0.44468	1	21418	21418		44.407	26.272	1	2535200			1164	8687	734	745	1144	1144					5.229208954915521E-05
AEIIASHW	8	Unmodified	_AEIIASHW_					0	0	0		ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;ENST00000570934.5_1_17:4098183-4145738:-|nuORF	ENSG00000185722|ENST00000341657|ANKFY1	ENSG00000185722|ENST00000341657|ANKFY1	MULTI-SECPEP	A375_MHC_IP_R2	2	464.13958740234375	2	463.74016	925.465767	-0.94266	-0.00043715	-0.059208	-2.7457E-05	-1.0019	-0.00046461	463.74003282447194	58.683	0.8623	59.431	59.186	60.048	0.74833					28	16	2	0	0	0	0.50167	1	22224	22224		50.855	6.448	1	2079600			1165	8687	734	745	1145	1145					5.229208954915521E-05
AEIIGSTNLI	10	Unmodified	_AEIIGSTNLI_					0	0	0		ENSG00000121446|ENST00000294854|RGSL1;nc|ENSG00000121446|A5PLK6-6|RGSL1	ENSG00000121446|ENST00000294854|RGSL1	ENSG00000121446|ENST00000294854|RGSL1	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1922607421875	2	515.792589	1029.57063	-0.3747	-0.00019327	-4.1906	-0.0021615	-4.5653	-0.0023548	515.7923549498718	47.853	0.65535	47.853	47.467	48.122	0					44	12	6	0	0	0	0.12766	1	16820	16820		79.596	0	1	4752100			1166	3721	735	746	1146	1146					0.057023058948516336
AEIIKEDLW	9	Unmodified	_AEIIKEDLW_					0	0	0		ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	MULTI-SECPEP	A375_MHC_IP_R1	1	559.1993408203125	2	558.800414	1115.58628	-0.68632	-0.00038352	-2.9283	-0.0016363	-3.6146	-0.0020199	558.7994787835027	84.27	1.0636	84.27	83.583	84.647	0					36	20	3	0	0	0	0.18869	1	30863	30863		67.838	37.202	1	7486900			1167	8973	736	747	1147	1147					0.033105924118899566
AEIKALKEKY	10	Unmodified	_AEIKALKEKY_					0	0	0		nc|ENSG00000151746|Q96G01-4|BICD1;nc|ENSG00000151746|Q96G01-3|BICD1;ENSG00000151746|ENST00000652176|BICD1	nc|ENSG00000151746|Q96G01-4|BICD1	nc|ENSG00000151746|Q96G01-4|BICD1	MULTI-SECPEP	A375_MHC_IP_R1	1	397.9312744140625	3	398.236051	1191.68632	-0.43652	-0.00017384	0.48534	0.00019328	0.048821	1.9442E-05	398.2362206313489	23.858	0.20252	23.858	23.687	23.889	0					8	3	3	0	0	0	0.67395	1	6648	6648		22.109	11.794	1	4370300			1168	5926	737	748	1148	1148					0.09814829745687348
AEILENKKN	9	Unmodified	_AEILENKKN_					0	0	0			REV__nc|ENSG00000075975|Q9H000-2|MKRN2	REV__nc|ENSG00000075975|Q9H000-2|MKRN2	MULTI-SECPEP	A375_MHC_IP_R2	2	529.668701171875	2	529.795663	1057.57677	-0.68859	-0.00036481	-0.7721	-0.00040905	-1.4607	-0.00077386	529.7953826509928	51.035	1.2149	51.789	51.006	52.221	0.75406					28	23	2	0	0	0	0.27742	1	19203	19203		43.772	0	1	6268200	+		1169	16667	738	749	1149	1149					0.05028824126384279
AEILLKKKI	9	Unmodified	_AEILLKKKI_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENST00000451446.1_1_13:24697062-24697869:-|nuORF	ENSG00000205339|ENST00000379719|IPO7;ENST00000451446.1_1_13:24697062-24697869:-|nuORF	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	A375_MHC_IP_R2	2	352.9774475097656	3	352.577749	1054.71142	-0.43741	-0.00015422	-0.7232	-0.00025498	-1.1606	-0.0004092	352.5777896954254	26.866	0.76692	27.526	27.109	27.876	0.65992					29	14	3	0	0	0	0.13728	1	9133	9133		43.982	17.961	1	4922300			1170	9510;12073	739	750	1150	1150					0.1862492933894373
AEILQESRM	9	Oxidation (M)	_AEILQESRM(Oxidation (M))_		AEILQESRM(1)		AEILQESRM(120)	0	0	1		ENST00000436520.1_1_X:33059580-33059835:+|nuORF;ENSG00000171530|ENST00000380377|TBCA;nc|ENSG00000171530|O75347-2|TBCA	ENST00000436520.1_1_X:33059580-33059835:+|nuORF	ENST00000436520.1_1_X:33059580-33059835:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	547.1712036132812	2	546.771331	1091.52811	-0.72782	-0.00039795	0.5641	0.00030844	-0.16371	-8.9514E-05	546.7718140232496	28.016	1.0592	28.016	27.381	28.44	0					38	20	3	0	0	0	0.0098876	1	8562	8562		117.84	10.897	1	17462000			1171	7613	740	751	1151	1151		383			-0.013994125050430739
AEILQESRM	9	Oxidation (M)	_AEILQESRM(Oxidation (M))_		AEILQESRM(1)		AEILQESRM(100)	0	0	1		ENST00000436520.1_1_X:33059580-33059835:+|nuORF;ENSG00000171530|ENST00000380377|TBCA;nc|ENSG00000171530|O75347-2|TBCA	ENST00000436520.1_1_X:33059580-33059835:+|nuORF	ENST00000436520.1_1_X:33059580-33059835:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	547.1712646484375	2	546.771331	1091.52811	-0.72712	-0.00039757	0.14628	7.9982E-05	-0.58084	-0.00031759	546.7715652721643	27.428	1.0684	28.106	27.587	28.655	0.67857					36	20	3	0	0	0	0.0092755	1	9347	9347		103.82	11.17	1	16850000			1172	7613	740	751	1152	1152		383			-0.013994125050430739
AEILRQLYTE	10	Unmodified	_AEILRQLYTE_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	A375_MHC_IP_R2	2	412.958984375	3	412.559194	1234.65575	-0.43867	-0.00018098	1.0586	0.00043673	0.61991	0.00025575	412.55918490883334	25.769	0.5094	26.429	26.194	26.703	0.65992					27	9	4	0	0	0	0.83327	1	8656	8656		16.275	3.4186	1	7672500			1173	1157	741	752	1153	1153					0.04781051360669153
AEIMHIKLPL	10	Unmodified	_AEIMHIKLPL_					0	0	0		nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6;ENST00000426898.2_1_12:45610123-45776982:+|nuORF	nc|ENSG00000177119|Q4KMQ2-3|ANO6	nc|ENSG00000177119|Q4KMQ2-3|ANO6	MULTI-MSMS	A375_MHC_IP_R2	2	582.7418212890625	2	582.844102	1163.67365	-0.20712	-0.00012072	-0.83576	-0.00048712	-1.0429	-0.00060784	583.3445565559009	142.93	0.40431	142.96	142.74	143.14	0.030746					12	7	2	0	0	0	0.71944	1	55897	55897		3.5965	1.019	1	571160			1174	8063	742	753	1154	1154					0.0983609508182326
AEIMRSLSF	9	Unmodified	_AEIMRSLSF_					0	0	0		ENSG00000236637|ENST00000421715|IFNA4;ENSG00000234829|ENST00000413767|IFNA17;ENSG00000228083|ENST00000380222|IFNA14;ENSG00000186803|ENST00000357374|IFNA10	ENSG00000236637|ENST00000421715|IFNA4	ENSG00000236637|ENST00000421715|IFNA4	MSMS	A375_MHC_IP_R2	2	527.1844482421875	2	527.273509	1052.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.128	1	54.879	54.379	55.379	0.75105								0	0	0	0.13673	1	20431	20431		30.637	2.1497	1				1175	8778	743	754	1155	1155					0.008300967085460798
AEINENNVREF	11	Unmodified	_AEINENNVREF_					0	0	0		nc|ENSG00000151332|Q9NS73-3|MBIP;nc|ENSG00000151332|Q9NS73-2|MBIP;nc|ENSG00000151332|Q9NS73-5|MBIP;ENSG00000151332|ENST00000416007|MBIP	nc|ENSG00000151332|Q9NS73-3|MBIP	nc|ENSG00000151332|Q9NS73-3|MBIP	MULTI-SECPEP	A375_MHC_IP_R1	1	668.220703125	2	667.820398	1333.62624	-0.12657	-8.4528E-05	-0.064384	-4.2997E-05	-0.19096	-0.00012753	667.8205114995269	44.643	0.40711	44.643	44.42	44.827	0					13	7	2	0	0	0	0.50216	1	15607	15607		66.683	57.3	1	2376700			1176	5896	744	755	1156	1156					-0.02722512655486753
AEINENNVREF	11	Unmodified	_AEINENNVREF_					0	0	0		nc|ENSG00000151332|Q9NS73-3|MBIP;nc|ENSG00000151332|Q9NS73-2|MBIP;nc|ENSG00000151332|Q9NS73-5|MBIP;ENSG00000151332|ENST00000416007|MBIP	nc|ENSG00000151332|Q9NS73-3|MBIP	nc|ENSG00000151332|Q9NS73-3|MBIP	MULTI-SECPEP	A375_MHC_IP_R2	2	668.2206420898438	2	667.820398	1333.62624	-0.59127	-0.00039486	0.42512	0.00028391	-0.16614	-0.00011095	667.820978005205	43.917	0.40359	44.686	44.48	44.883	0.7691					13	7	2	0	0	0	0.91328	1	16425	16425		33.821	27.616	1	2637000			1177	5896	744	755	1157	1157					-0.02722512655486753
AEINHPVTTY	10	Unmodified	_AEINHPVTTY_					0	0	0		nc|ENSG00000108582|O75976-2|CPD;ENSG00000108582|ENST00000225719|CPD;ENST00000581826.1_1_17:28766004-28770990:+|nuORF	nc|ENSG00000108582|O75976-2|CPD	nc|ENSG00000108582|O75976-2|CPD	MULTI-MSMS	A375_MHC_IP_R1	1	573.1849975585938	2	572.785296	1143.55604	-0.17932	-0.00010271	-0.047173	-2.702E-05	-0.22649	-0.00012973	572.7851902552127	33.723	0.5055	33.723	33.445	33.95	0					18	9	3	0	0	0	0.027029	1	11066	11066		84.522	40.75	1	4940200			1178	2817	745	756	1158	1158					-0.009997662532896356
AEINHPVTTY	10	Unmodified	_AEINHPVTTY_					0	0	0		nc|ENSG00000108582|O75976-2|CPD;ENSG00000108582|ENST00000225719|CPD;ENST00000581826.1_1_17:28766004-28770990:+|nuORF	nc|ENSG00000108582|O75976-2|CPD	nc|ENSG00000108582|O75976-2|CPD	MULTI-MSMS	A375_MHC_IP_R2	2	573.18505859375	2	572.785296	1143.55604	-0.3648	-0.00020895	-0.46403	-0.00026579	-0.82883	-0.00047474	572.7849792235243	33.011	0.61001	33.748	33.367	33.977	0.73692					15	11	2	0	0	0	0.0038974	1	11809	11809		103.82	63.874	1	5388600			1179	2817	745	756	1159	1159					-0.009997662532896356
AEINNIIKI	9	Unmodified	_AEINNIIKI_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B;ENST00000491510.1_1_3:25668659-25671642:-|nuORF	ENSG00000131747|ENST00000423485|TOP2A;ENSG00000077097|ENST00000264331|TOP2B	ENSG00000077097|ENST00000264331|TOP2B	MULTI-MSMS	A375_MHC_IP_R1	1	514.2621459960938	2	514.310949	1026.60735	-0.48936	-0.00025168	-0.25251	-0.00012987	-0.74186	-0.00038155	514.3108081110872	81.552	1.2162	81.552	81.151	82.368	0					59	23	5	0	0	0	0.010044	1	29883	29883		125.04	69.535	1	41353000			1180	4347;1646	746	757	1160	1160					0.09510602511409161
AEINNIIKI	9	Unmodified	_AEINNIIKI_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B;ENST00000491510.1_1_3:25668659-25671642:-|nuORF	ENSG00000131747|ENST00000423485|TOP2A;ENSG00000077097|ENST00000264331|TOP2B	ENSG00000077097|ENST00000264331|TOP2B	MULTI-SECPEP	A375_MHC_IP_R2	2	514.7106323242188	2	514.310949	1026.60735	-0.81593	-0.00041964	0.0037617	1.9347E-06	-0.81217	-0.00041771	514.3109435473255	80.595	1.1191	81.34	81.011	82.13	0.74474					50	21	4	0	0	0	0.010931	1	30564	30564		125.04	71.205	1	42406000			1181	4347;1646	746	757	1161	1161					0.09510602511409161
AEIPGLSINF	10	Unmodified	_AEIPGLSINF_					0	0	0		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000512029.1_1_5:118832263-118835290:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	531.1864624023438	2	530.787307	1059.56006	-0.47725	-0.00025332	-0.40583	-0.00021541	-0.88308	-0.00046873	530.7870566696657	128.41	0.20325	128.41	128.28	128.48	0					5	3	2	0	0	0	0.20175	1	49338	49338		61.602	43.456	1	6171800			1182	4532	747	758	1162	1162					0.03266323240427482
AEIPGLSINF	10	Unmodified	_AEIPGLSINF_					0	0	0		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000512029.1_1_5:118832263-118835290:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	531.1871948242188	2	530.787307	1059.56006	-0.69531	-0.00036906	-0.5131	-0.00027235	-1.2084	-0.00064141	530.7871134903426	128.17	0.15292	128.41	128.3	128.45	0.23946					4	2	2	0	0	0	0.080535	1	50329	50329		67.838	27.888	1	6241600			1183	4532	747	758	1163	1163					0.03266323240427482
AEIPVEPFAM	10	Unmodified	_AEIPVEPFAM_					0	0	0			REV__RPGRIP1|p.S970F|1|0.24|ENSG00000092200|chr14:21328437-21328437|C/T|missense_variant	REV__RPGRIP1|p.S970F|1|0.24|ENSG00000092200|chr14:21328437-21328437|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	552.6895141601562	2	552.275718	1102.53688	-0.80474	-0.00044444	1.2411	0.00068545	0.4364	0.00024102	552.2757488543677	74.322	1.3731	75.059	74.398	75.772	0.73752					43	26	3	0	0	0	0.70496	1	27990	27990		10.074	0.6908	1	1761900	+		1184	27896	748	759	1164	1164					-0.010284388685477097
AEIQEAVPQ	9	Unmodified	_AEIQEAVPQ_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	A375_MHC_IP_R1	1	492.1818542480469	2	492.753464	983.492375	-0.36184	-0.0001783	1.2927	0.00063697	0.93084	0.00045867	492.75411458067606	24.928	0.30375	24.928	24.801	25.104	0					6	5	2	0	0	0	0.69507	1	7206	7206		9.3831	1.7742	1	4741000	+		1185	18581	749	760	1165	1165					-3.126690376120678E-05
AEIQEQLTI	9	Unmodified	_AEIQEQLTI_					0	0	0			REV__nc|ENSG00000099995|Q15459-2|SF3A1	REV__nc|ENSG00000099995|Q15459-2|SF3A1	MULTI-SECPEP	A375_MHC_IP_R1	1	522.6661987304688	2	522.782222	1043.54989	-0.56332	-0.00029449	0.43075	0.00022519	-0.13257	-6.9305E-05	522.7820215730585	58.491	0.25424	58.491	58.328	58.582	0					8	4	2	0	0	0	0.46045	1	21024	21024		22.736	0	1	1040100	+		1186	17040	750	761	1166	1166					0.029857155152058112
AEIQHAEEF	9	Unmodified	_AEIQHAEEF_					0	0	0		ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1;ENST00000473552.1_1_X:153991228-153994704:+|nuORF	ENSG00000130826|ENST00000369550|DKC1	ENSG00000130826|ENST00000369550|DKC1	MULTI-MSMS	A375_MHC_IP_R1	1	537.6480712890625	2	537.248546	1072.48254	-0.66149	-0.00035538	-0.23542	-0.00012648	-0.89691	-0.00048187	537.2484033643108	34.835	0.55912	34.835	34.608	35.167	0					18	10	2	0	0	0	0.0099737	1	11531	11531		96.367	60.24	1	6620100			1187	4287	751	762	1167	1167					-0.05080314695760535
AEIQHAEEF	9	Unmodified	_AEIQHAEEF_					0	0	0		ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1;ENST00000473552.1_1_X:153991228-153994704:+|nuORF	ENSG00000130826|ENST00000369550|DKC1	ENSG00000130826|ENST00000369550|DKC1	MULTI-MSMS	A375_MHC_IP_R2	2	537.6480102539062	2	537.248546	1072.48254	-1.2314	-0.00066155	0.33268	0.00017873	-0.89869	-0.00048282	537.2485301668436	34.183	0.61061	34.936	34.651	35.262	0.75225					17	11	2	0	0	0	0.0098085	1	12318	12318		114.2	79.8	1	5244700			1188	4287	751	762	1168	1168					-0.05080314695760535
AEIQTQAHL	9	Unmodified	_AEIQTQAHL_					0	0	0		ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	MULTI-SECPEP	A375_MHC_IP_R2	2	506.1845397949219	2	505.766906	1009.51926	-0.89624	-0.00045329	0.49623	0.00025098	-0.40001	-0.00020231	505.7670679260234	50.278	0.55722	51.032	50.753	51.311	0.75406					17	10	2	0	0	0	0.61452	1	18887	18887		26.268	26.268	1	1930000			1189	8122	752	763	1169	1169					0.014879819208090339
AEIQTQAHL	9	Unmodified	_AEIQTQAHL_					0	0	0		ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	MULTI-MATCH	A375_MHC_IP_R1	1		2	505.766906	1009.51926	-0.27895	-0.00014109	-0.037263	-1.8846E-05	-0.31622	-0.00015993	505.7668643180738	51.205	0.50917	51.205	50.915	51.424	0	0.086369	-0.00023118	NaN	20.415	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1480700			1190	8122	752	763							0.014879819208090339
AEIRIIPAKKY	11	Unmodified	_AEIRIIPAKKY_					0	0	0		nc|ENSG00000116133|Q15392-2|DHCR24;ENSG00000116133|ENST00000371269|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	MULTI-MSMS	A375_MHC_IP_R1	1	435.002685546875	3	434.602845	1300.78671	-0.19608	-8.5217E-05	0.051313	2.2301E-05	-0.14477	-6.2916E-05	434.6028874359934	34.131	0.91159	34.131	33.848	34.759	0					63	17	5	0	0	0	0.013697	4	11174	11162;11174;11270;11433		77.813	40.562	1	268880000			1191	3373	753	764	1170;1171;1172;1173	1171					0.14834486799372826
AEIRIIPAKKY	11	Unmodified	_AEIRIIPAKKY_					0	0	0		nc|ENSG00000116133|Q15392-2|DHCR24;ENSG00000116133|ENST00000371269|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	MULTI-MSMS	A375_MHC_IP_R1	1	651.8004150390625	2	651.40063	1300.78671	-0.39899	-0.0002599	-0.069386	-4.5198E-05	-0.46838	-0.0003051	651.4005052892655	34.179	0.4034	34.179	33.95	34.353	0					18	7	3	0	0	0	0.50881	2	11227	11227;11239		30.431	16.817	1	7871500			1192	3373	753	764	1174;1175	1174					0.14834486799372826
AEIRIIPAKKY	11	Unmodified	_AEIRIIPAKKY_					0	0	0		nc|ENSG00000116133|Q15392-2|DHCR24;ENSG00000116133|ENST00000371269|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	MULTI-MSMS	A375_MHC_IP_R2	2	435.0025634765625	3	434.602845	1300.78671	-0.52433	-0.00022787	-0.024095	-1.0472E-05	-0.54842	-0.00023835	434.6028440331223	33.263	1.0654	34.016	33.737	34.803	0.75225					71	20	6	0	0	0	0.0010373	3	11842	11833;11842;12100		81.552	50.09	1	230770000			1193	3373	753	764	1176;1177;1178	1177					0.14834486799372826
AEIRIIPAKKY	11	Unmodified	_AEIRIIPAKKY_					0	0	0		nc|ENSG00000116133|Q15392-2|DHCR24;ENSG00000116133|ENST00000371269|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	MULTI-MSMS	A375_MHC_IP_R2	2	651.800048828125	2	651.40063	1300.78671	-1.0183	-0.00066329	0.3726	0.00024271	-0.64565	-0.00042058	651.4007417472153	33.274	0.50927	34.026	33.789	34.298	0.75225					20	9	4	0	0	0	0.46568	1	11897	11897		33.821	24.277	1	6769300			1194	3373	753	764	1179	1179					0.14834486799372826
AEIRKYNE	8	Unmodified	_AEIRKYNE_					0	0	0			REV__ENSG00000178127|ENST00000318388|NDUFV2	REV__ENSG00000178127|ENST00000318388|NDUFV2	MULTI-SECPEP	A375_MHC_IP_R1	1	511.207763671875	2	511.766906	1021.51926	-0.63513	-0.00032504	2.1339	0.0010921	1.4988	0.00076701	512.2705542881274	39.999	0.35608	39.999	39.744	40.1	0					11	6	2	0	0	0	0.88903	1	13750	13750		24.021	3.5669	1	1191100	+		1195	21489	754	765	1180	1180					0.009359819208043518
AEIRLDKNDY	10	Unmodified	_AEIRLDKNDY_					0	0	0		ENSG00000113594|ENST00000453190|LIFR;ENST00000503088.1_1_5:38490841-38530749:-|nuORF	ENSG00000113594|ENST00000453190|LIFR	ENSG00000113594|ENST00000453190|LIFR	MULTI-SECPEP	A375_MHC_IP_R2	2	412.958984375	3	412.878815	1235.61462	-0.42835	-0.00017686	0.059966	2.4759E-05	-0.36839	-0.0001521	412.8786790410832	25.916	0.40714	26.576	26.398	26.805	0.65992					11	7	2	0	0	0	0.93733	1	8656	8656		3.0723	0.63748	1	1960400			1196	3165	755	766	1181	1181					0.006232903212094243
AEIRSLVTW	9	Unmodified	_AEIRSLVTW_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-SECPEP	A375_MHC_IP_R1	1	538.2001953125	2	537.800749	1073.58694	-0.89009	-0.00047869	-0.042486	-2.2849E-05	-0.93258	-0.00050154	537.8004218260055	85.522	0.6095	85.522	85.261	85.87	0					18	11	2	0	0	0	0.47674	1	31394	31394		23.79	3.3752	1	2809500			1197	3636	756	767	1182	1182					0.053094318516286876
AEIRSLVTW	9	Unmodified	_AEIRSLVTW_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-SECPEP	A375_MHC_IP_R2	2	538.2003173828125	2	537.800749	1073.58694	-0.75434	-0.00040568	-0.21967	-0.00011814	-0.97401	-0.00052382	537.8005137968113	84.713	0.55779	85.449	85.171	85.729	0.73602					16	10	2	0	0	0	0.36673	1	32204	32204		38.615	13.215	1	2300800			1198	3636	756	767	1183	1183					0.053094318516286876
AEISNAIDQY	10	Unmodified	_AEISNAIDQY_					0	0	0		ENST00000446622.5_1_2:216199652-216212358:+|nuORF;ENST00000467388.1_1_2:216203501-216211697:+|nuORF;nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF	ENST00000446622.5_1_2:216199652-216212358:+|nuORF;nc|ENSG00000138363|P31939-2|ATIC	nc|ENSG00000138363|P31939-2|ATIC	MULTI-SECPEP	A375_MHC_IP_R1	1	562.6663818359375	2	562.266936	1122.51932	-0.52124	-0.00029308	0.52924	0.00029757	0.0079971	4.4965E-06	562.2672166590662	64.841	0.71169	64.841	64.597	65.309	0					23	13	3	0	0	0	0.33503	1	23490	23490		80.676	36.904	1	1958700			1199	4983;12038	757	768	1184	1184					-0.03704062869860536
AEISNAIDQY	10	Unmodified	_AEISNAIDQY_					0	0	0		ENST00000446622.5_1_2:216199652-216212358:+|nuORF;ENST00000467388.1_1_2:216203501-216211697:+|nuORF;nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF	ENST00000446622.5_1_2:216199652-216212358:+|nuORF;nc|ENSG00000138363|P31939-2|ATIC	nc|ENSG00000138363|P31939-2|ATIC	MULTI-SECPEP	A375_MHC_IP_R2	2	562.14306640625	2	562.266936	1122.51932	-0.48673	-0.00027367	-0.57354	-0.00032248	-1.0603	-0.00059615	562.2666365323885	64.267	0.45895	65.007	64.749	65.208	0.74022					18	8	3	0	0	0	0.61782	1	24360	24360		41.956	11.319	1	1633900			1200	4983;12038	757	768	1185	1185					-0.03704062869860536
AEITDKLGL	9	Unmodified	_AEITDKLGL_					0	0	0		nc|ENSG00000134287|P61204-2|ARF3;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;ENST00000444561.2_1_17:43710417-43713807:+|nuORF;ENST00000470670.5_1_1:228284963-228285711:+|nuORF	nc|ENSG00000134287|P61204-2|ARF3	nc|ENSG00000134287|P61204-2|ARF3	MULTI-SECPEP	A375_MHC_IP_R1	1	480.6740417480469	2	480.274032	958.533512	-0.74194	-0.00035634	2.6653	0.0012801	1.9234	0.00092375	480.2742616977127	67.432	1.0174	67.432	67.04	68.057	0					62	19	5	0	0	0	0.038931	1	24395	24395		100.09	14.819	1	53767000			1201	4562	758	769	1186	1186					0.05258634349092972
AEITDKLGL	9	Unmodified	_AEITDKLGL_					0	0	0		nc|ENSG00000134287|P61204-2|ARF3;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;ENST00000444561.2_1_17:43710417-43713807:+|nuORF;ENST00000470670.5_1_1:228284963-228285711:+|nuORF	nc|ENSG00000134287|P61204-2|ARF3	nc|ENSG00000134287|P61204-2|ARF3	MULTI-SECPEP	A375_MHC_IP_R2	2	480.6737060546875	2	480.274032	958.533512	-0.67736	-0.00032532	2.4227	0.0011636	1.7453	0.00083823	480.2742142561017	66.562	1.272	67.298	66.78	68.052	0.73631					65	24	4	0	0	0	0.061442	1	25226	25226		82.529	30.261	1	52722000			1202	4562	758	769	1187	1187					0.05258634349092972
AEITGEIQQY	10	Unmodified	_AEITGEIQQY_					0	0	0		ENSG00000115904|ENST00000402219|SOS1;nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2	ENSG00000115904|ENST00000402219|SOS1;nc|ENSG00000100485|Q07890-2|SOS2	ENSG00000115904|ENST00000402219|SOS1	MULTI-SECPEP	A375_MHC_IP_R1	1	1152.2178955078125	1	1151.55789	1150.55062	0.079065	9.1048E-05	0.3541	0.00040777	0.43316	0.00049881	1151.5580823593461	63.424	0.56334	63.424	63.069	63.632	0					24	10	3	0	0	0	0.42334	1	23006	23006		51.63	9.7902	1	5771900			1203	3349;2185	759	770	1188	1188					-0.018634898357504426
AEITGEIQQY	10	Unmodified	_AEITGEIQQY_					0	0	0		ENSG00000115904|ENST00000402219|SOS1;nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2	ENSG00000115904|ENST00000402219|SOS1;nc|ENSG00000100485|Q07890-2|SOS2	ENSG00000115904|ENST00000402219|SOS1	MULTI-MSMS	A375_MHC_IP_R2	2	576.2802124023438	2	576.282586	1150.55062	-0.17312	-9.9769E-05	0.46561	0.00026832	0.29248	0.00016855	576.2827712695472	62.771	1.0125	63.514	63.028	64.04	0.74263					50	19	3	0	0	0	0.0036544	1	23909	23909		96.936	47.381	1	21824000			1204	3349;2185	759	770	1189	1189					-0.018634898357504426
AEITGEIQQY	10	Unmodified	_AEITGEIQQY_					0	0	0		ENSG00000115904|ENST00000402219|SOS1;nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2	ENSG00000115904|ENST00000402219|SOS1;nc|ENSG00000100485|Q07890-2|SOS2	ENSG00000115904|ENST00000402219|SOS1	MULTI-MATCH	A375_MHC_IP_R2	2		1	1151.55789	1150.55062	0.15193	0.00017496	-0.1554	-0.00017896	-0.0034703	-3.9963E-06	1151.5573860565257	62.825	0.55588	63.568	63.282	63.838	0.74263	0.071933	-0.00025339	NaN	51.63	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5065100			1205	3349;2185	759	770							-0.018634898357504426
AEITYLIR	8	Unmodified	_AEITYLIR_					0	0	0		ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3	ENSG00000165323|ENST00000525166|FAT3	ENSG00000165323|ENST00000525166|FAT3	MULTI-SECPEP	A375_MHC_IP_R1	1	490.44854736328125	2	489.784567	977.554582	-0.22745	-0.0001114	-0.35706	-0.00017488	-0.58452	-0.00028629	489.7843780507024	23.1	0.30234	23.1	22.873	23.176	0					7	5	2	0	0	0	0.972	1	6202	6202		4.3292	0	1	2099700			1206	6942	760	771	1190	1190					0.06490644448615512
AEIVEGENHTY	11	Unmodified	_AEIVEGENHTY_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000474358.5_1_X:153580213-153581146:-|nuORF;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	A375_MHC_IP_R1	1	631.6878662109375	2	631.288399	1260.56225	-0.67787	-0.00042793	0.14901	9.4069E-05	-0.52886	-0.00033386	631.288485252744	31.332	1.0155	31.332	31.009	32.024	0					51	19	5	0	0	0	3.9575E-07	1	9987	9987		153.7	92.609	1	139360000			1207	9093;12651	761	772	1191	1191					-0.05761292812417196
AEIVEGENHTY	11	Unmodified	_AEIVEGENHTY_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000474358.5_1_X:153580213-153581146:-|nuORF;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	A375_MHC_IP_R2	2	631.6876220703125	2	631.288399	1260.56225	-0.82871	-0.00052315	-0.063372	-4.0006E-05	-0.89208	-0.00056316	631.2883480515425	30.674	0.86054	31.392	31.114	31.974	0.71857					49	16	5	0	0	0	3.9575E-07	1	10760	10760		153.7	107.68	1	126700000			1208	9093;12651	761	772	1192	1192					-0.05761292812417196
AEIVKKDDF	9	Unmodified	_AEIVKKDDF_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1;ENST00000521671.1_1_8:104064982-104075474:+|nuORF	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-MSMS	A375_MHC_IP_R1	1	355.92529296875	3	355.525602	1063.55498	-0.30124	-0.0001071	-0.14254	-5.0676E-05	-0.44378	-0.00015777	355.5255146388576	26.737	0.55256	26.737	26.575	27.128	0					17	10	2	0	0	0	0.37338	1	8025	8025		26.021	6.0338	1	4856800			1209	6127	762	773	1193	1193					0.025740193777892273
AEIVKKDDF	9	Unmodified	_AEIVKKDDF_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1;ENST00000521671.1_1_8:104064982-104075474:+|nuORF	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1842041015625	2	532.784764	1063.55498	-0.93238	-0.00049676	0.2039	0.00010863	-0.72848	-0.00038812	532.7847577693494	26.754	0.55331	26.754	26.524	27.078	0					24	10	3	0	0	0	0.16237	1	8020	8020		63.227	33.387	1	17873000			1210	6127	762	773	1194	1194					0.025740193777892273
AEIVKKDDF	9	Unmodified	_AEIVKKDDF_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1;ENST00000521671.1_1_8:104064982-104075474:+|nuORF	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-MSMS	A375_MHC_IP_R2	2	355.9251403808594	3	355.525602	1063.55498	-0.63265	-0.00022492	0.027984	9.9491E-06	-0.60467	-0.00021498	355.5255762041598	26.136	0.55821	26.795	26.551	27.109	0.65992					17	10	2	0	0	0	0.31609	1	8806	8806		29.437	3.4398	1	6966700			1211	6127	762	773	1195	1195					0.025740193777892273
AEIVKKDDF	9	Unmodified	_AEIVKKDDF_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1;ENST00000521671.1_1_8:104064982-104075474:+|nuORF	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-SECPEP	A375_MHC_IP_R2	2	533.183837890625	2	532.784764	1063.55498	-1.1348	-0.00060463	0.44382	0.00023646	-0.69102	-0.00036816	532.7847199029272	26.166	0.60928	26.826	26.5	27.109	0.65992					27	11	4	0	0	0	0.16237	1	8801	8801		63.227	33.387	1	15414000			1212	6127	762	773	1196	1196					0.025740193777892273
AEIVSIDTF	9	Unmodified	_AEIVSIDTF_					0	0	0		ENST00000595484.5_1_19:47984015-47987327:-|nuORF;ENSG00000118162|ENST00000338134|KPTN	ENST00000595484.5_1_19:47984015-47987327:-|nuORF	ENST00000595484.5_1_19:47984015-47987327:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	994.1510620117188	1	994.509154	993.501877	0.45538	0.00045288	-0.17389	-0.00017293	0.28149	0.00027994	994.5090560674139	107.67	0.66331	107.67	107.34	108	0					31	12	3	0	0	0	0.003087	1	39479	39479		158.2	21.869	1	13646000			1213	3527	763	774	1197	1197					0.00486641595148285
AEIVSIDTF	9	Unmodified	_AEIVSIDTF_					0	0	0		ENST00000595484.5_1_19:47984015-47987327:-|nuORF;ENSG00000118162|ENST00000338134|KPTN	ENST00000595484.5_1_19:47984015-47987327:-|nuORF	ENST00000595484.5_1_19:47984015-47987327:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	498.1581726074219	2	497.758215	993.501877	-0.13837	-6.8874E-05	0.13196	6.5683E-05	-0.006411	-3.1911E-06	497.7583127883353	107.76	0.91661	107.76	107.34	108.26	0					38	17	3	0	0	0	0.0095277	1	39489	39489		108	19.093	1	7196700			1214	3527	763	774	1198	1198					0.00486641595148285
AEIVSIDTF	9	Unmodified	_AEIVSIDTF_					0	0	0		ENST00000595484.5_1_19:47984015-47987327:-|nuORF;ENSG00000118162|ENST00000338134|KPTN	ENST00000595484.5_1_19:47984015-47987327:-|nuORF	ENST00000595484.5_1_19:47984015-47987327:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	498.1582336425781	2	497.758215	993.501877	-0.58386	-0.00029062	-0.0594	-2.9567E-05	-0.64326	-0.00032019	497.75807984368726	106.96	0.76146	107.72	107.39	108.15	0.75977					39	14	4	0	0	0	0.0086611	2	40373	40373;40463		128.37	20.368	1	7184000			1215	3527	763	774	1199;1200	1199					0.00486641595148285
AEIVSIDTF	9	Unmodified	_AEIVSIDTF_					0	0	0		ENST00000595484.5_1_19:47984015-47987327:-|nuORF;ENSG00000118162|ENST00000338134|KPTN	ENST00000595484.5_1_19:47984015-47987327:-|nuORF	ENST00000595484.5_1_19:47984015-47987327:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	994.509154	993.501877	-0.069357	-6.8976E-05	-0.098657	-9.8115E-05	-0.16801	-0.00016709	994.5090086315878	106.96	0.81219	107.71	107.34	108.15	0.75977	0.023567	3.7227E-05	NaN	158.2	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12919000			1216	3527	763	774							0.00486641595148285
AEIWLGLNDM	10	Unmodified	_AEIWLGLNDM_					0	0	0		ENST00000481405.1_1_3:45038716-45077413:+|nuORF;ENSG00000163815|ENST00000296130|CLEC3B	ENST00000481405.1_1_3:45038716-45077413:+|nuORF	ENST00000481405.1_1_3:45038716-45077413:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	388.25823974609375	3	387.858475	1160.5536	0.0142	5.5077E-06	-0.57898	-0.00022456	-0.56478	-0.00021906	387.8581984238879	24.075	1.1148	24.075	23.737	24.852	0					37	21	2	0	0	0	0.60608	2	6875	6842;6875		13.519	5.5733	1	6084000			1217	6728	764	775	1201;1202	1202					-0.020259379826029544
AEIWLGLNDM	10	Unmodified	_AEIWLGLNDM_					0	0	0		ENST00000481405.1_1_3:45038716-45077413:+|nuORF;ENSG00000163815|ENST00000296130|CLEC3B	ENST00000481405.1_1_3:45038716-45077413:+|nuORF	ENST00000481405.1_1_3:45038716-45077413:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	581.6837158203125	2	581.284074	1160.5536	-0.61087	-0.00035509	-0.092395	-5.3708E-05	-0.70326	-0.0004088	581.2840833823922	19.196	0.35287	19.799	19.633	19.986	0.60308					15	6	3	0	0	0	0.62015	1	5879	5879		19.362	5.4559	1	8416700			1218	6728	764	775	1203	1203					-0.020259379826029544
AEIWLGLNDM	10	Unmodified	_AEIWLGLNDM_					0	0	0		ENST00000481405.1_1_3:45038716-45077413:+|nuORF;ENSG00000163815|ENST00000296130|CLEC3B	ENST00000481405.1_1_3:45038716-45077413:+|nuORF	ENST00000481405.1_1_3:45038716-45077413:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	388.2584533691406	3	387.858475	1160.5536	-0.49239	-0.00019098	0.32837	0.00012736	-0.16402	-6.3615E-05	387.8586622490999	22.251	1.3793	22.87	22.387	23.766	0.61932					98	26	6	0	0	0	0.59108	1	7022	7022		14.218	2.0434	1	200980000			1219	6728	764	775	1204	1204					-0.020259379826029544
AEIWLGLNDM	10	Unmodified	_AEIWLGLNDM_					0	0	0		ENST00000481405.1_1_3:45038716-45077413:+|nuORF;ENSG00000163815|ENST00000296130|CLEC3B	ENST00000481405.1_1_3:45038716-45077413:+|nuORF	ENST00000481405.1_1_3:45038716-45077413:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	388.25823974609375	3	387.858475	1160.5536	-0.43201	-0.00016756	-0.22332	-8.6617E-05	-0.65533	-0.00025418	387.85841530834074	23.539	1.1686	24.169	23.675	24.843	0.63015					59	22	3	0	0	0	0.8528	1	7468	7468		14.218	2.7003	1	7748400			1220	6728	764	775	1205	1205					-0.020259379826029544
AEIWLGLNDM	10	Unmodified	_AEIWLGLNDM_					0	0	0		ENST00000481405.1_1_3:45038716-45077413:+|nuORF;ENSG00000163815|ENST00000296130|CLEC3B	ENST00000481405.1_1_3:45038716-45077413:+|nuORF	ENST00000481405.1_1_3:45038716-45077413:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	388.2765808105469	3	387.858475	1160.5536	-0.42533	-0.00016497	0.44347	0.000172	0.018137	7.0347E-06	387.85864960182744	19.199	0.85807	19.802	19.483	20.341	0.60308					44	16	5	0	0	0	0.79457	1	5844	5844		17.863	17.863	1	50470000			1221	6728	764	775	1206	1206					-0.020259379826029544
AEIWLGLNDM	10	Unmodified	_AEIWLGLNDM_					0	0	0		ENST00000481405.1_1_3:45038716-45077413:+|nuORF;ENSG00000163815|ENST00000296130|CLEC3B	ENST00000481405.1_1_3:45038716-45077413:+|nuORF	ENST00000481405.1_1_3:45038716-45077413:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	581.6837768554688	2	581.284074	1160.5536	-0.68051	-0.00039557	0.067151	3.9034E-05	-0.61336	-0.00035653	581.2841750460059	22.252	1.2243	22.871	22.643	23.867	0.61932					57	23	4	0	0	0	0.8528	1	7040	7040		21.537	21.537	1	35281000			1222	6728	764	775	1207	1207					-0.020259379826029544
AEIYRASF	8	Unmodified	_AEIYRASF_					0	0	0		NTAN1|p.R197W|1|0.41|ENSG00000157045|chr16:15040019-15040019|G/A|missense_variant;ENST00000566542.5_1_16:15131890-15138296:-|nuORF;ENSG00000157045|ENST00000287706|NTAN1	NTAN1|p.R197W|1|0.41|ENSG00000157045|chr16:15040019-15040019|G/A|missense_variant	NTAN1|p.R197W|1|0.41|ENSG00000157045|chr16:15040019-15040019|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	479.12054443359375	2	478.745442	955.476331	-0.30924	-0.00014805	0.12905	6.1782E-05	-0.18019	-8.6263E-05	478.745362083484	82.101	0.50774	82.101	81.86	82.368	0					14	9	2	0	0	0	0.86263	1	30082	30082		26.884	5.137	1	1421200			1223	6224	765	776	1208	1208					-0.003187881366216061
AEKAPTNIVY	10	Unmodified	_AEKAPTNIVY_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	MULTI-MSMS	A375_MHC_IP_R1	1	553.6976928710938	2	553.298039	1104.58152	-0.9005	-0.00049824	1.7556	0.00097137	0.85511	0.00047313	553.2980831240317	41.362	0.55875	41.362	41.063	41.622	0					25	10	3	0	0	0	0.19699	1	14269	14269		49.554	5.7819	1	2932800			1224	3510	766	777	1209	1209					0.03341708269135779
AEKAPTNIVY	10	Unmodified	_AEKAPTNIVY_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	MULTI-MSMS	A375_MHC_IP_R2	2	553.6975708007812	2	553.298039	1104.58152	-0.89187	-0.00049347	1.7818	0.00098586	0.88992	0.00049239	553.2980735416531	40.524	0.40685	41.299	41.133	41.54	0.77451					19	7	3	0	0	0	0.10955	2	15015	15015;15041		61.602	21.645	1	5207700			1225	3510	766	777	1210;1211	1210					0.03341708269135779
AEKCPNLTY	9	Carbamidomethyl (C)	_AEKC(Carbamidomethyl (C))PNLTY_	AEKC(1)PNLTY		AEKC(130)PNLTY		0	1	0		ENSG00000143401|ENST00000583931|ANP32E;nc|ENSG00000143401|Q9BTT0-3|ANP32E	ENSG00000143401|ENST00000583931|ANP32E	ENSG00000143401|ENST00000583931|ANP32E	MULTI-MSMS	A375_MHC_IP_R1	1	548.1723022460938	2	548.260599	1094.50665	-0.75263	-0.00041264	-0.29059	-0.00015932	-1.0432	-0.00057196	548.260442252506	32.811	0.80708	32.811	32.434	33.241	0					37	15	3	0	0	0	0.0064781	2	10643	10577;10643		132.38	80.111	1	11915000			1226	5385	767	778	1212;1213	1213	36				-0.03682797533747362
AEKCPNLTY	9	Carbamidomethyl (C)	_AEKC(Carbamidomethyl (C))PNLTY_	AEKC(1)PNLTY		AEKC(88)PNLTY		0	1	0		ENSG00000143401|ENST00000583931|ANP32E;nc|ENSG00000143401|Q9BTT0-3|ANP32E	ENSG00000143401|ENST00000583931|ANP32E	ENSG00000143401|ENST00000583931|ANP32E	MULTI-MSMS	A375_MHC_IP_R2	2	548.6602783203125	2	548.260599	1094.50665	-0.79987	-0.00043854	-0.37721	-0.00020681	-1.1771	-0.00064535	548.2605239454485	32.101	0.81274	32.838	32.453	33.265	0.73692					35	15	3	0	0	0	0.016157	2	11341	11341;11349		88.364	52.237	1	11844000			1227	5385	767	778	1214;1215	1214	36				-0.03682797533747362
AEKDINFKDLH	11	Unmodified	_AEKDINFKDLH_					0	0	0			REV__GYS2|p.L420*|1|0.31|ENSG00000111713|chr12:21559133-21559140|TCGATCTA/-|frameshift_variant	REV__GYS2|p.L420*|1|0.31|ENSG00000111713|chr12:21559133-21559140|TCGATCTA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	443.6789855957031	3	443.898098	1328.67246	-0.80689	-0.00035818	-0.0036123	-1.6035E-06	-0.8105	-0.00035978	443.898282430152	56.837	0.61107	57.587	57.152	57.763	0.75015					19	11	3	0	0	0	0.99165	1	21409	21409		12.228	12.228	1	1625700	+		1228	17689	768	779	1216	1216					0.02127552246633968
AEKEDSRSL	9	Unmodified	_AEKEDSRSL_					0	0	0		ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	MULTI-SECPEP	A375_MHC_IP_R2	2	517.6866455078125	2	517.759278	1033.504	-0.81876	-0.00042392	-0.85805	-0.00044426	-1.6768	-0.00086818	518.2592005474531	55.581	0.45558	56.331	56.187	56.642	0.75075					14	8	2	0	0	0	0.65246	1	20942	20942		10.824	0	1	944650			1229	6155	769	780	1217	1217					-0.011409296670308322
AEKELTDRNW	10	Unmodified	_AEKELTDRNW_					0	0	0		ENSG00000093000|ENST00000347635|NUP50;ENST00000497960.5_1_22:45560109-45567681:+|nuORF	ENSG00000093000|ENST00000347635|NUP50	ENSG00000093000|ENST00000347635|NUP50	MULTI-MSMS	A375_MHC_IP_R1	1	421.6107482910156	3	421.210565	1260.60986	-0.41123	-0.00017321	-0.074973	-3.1579E-05	-0.4862	-0.00020479	421.2105351216388	29.428	0.25184	29.428	29.252	29.504	0					8	4	2	0	0	0	0.037648	1	9227	9227		70.321	21.162	1	21263000			1230	2019	770	781	1218	1218					-0.010015938215929054
AEKELTDRNW	10	Unmodified	_AEKELTDRNW_					0	0	0		ENSG00000093000|ENST00000347635|NUP50;ENST00000497960.5_1_22:45560109-45567681:+|nuORF	ENSG00000093000|ENST00000347635|NUP50	ENSG00000093000|ENST00000347635|NUP50	MULTI-SECPEP	A375_MHC_IP_R2	2	421.9447326660156	3	421.210565	1260.60986	-0.74644	-0.00031441	0.43785	0.00018443	-0.30858	-0.00012998	421.5451299677476	28.66	0.30062	29.358	29.283	29.584	0.69872					9	5	2	0	0	0	0.11034	1	9964	9964		90.104	21.668	1	16307000			1231	2019	770	781	1219	1219					-0.010015938215929054
AEKFLSKGQLS	11	Unmodified	_AEKFLSKGQLS_					0	0	0		ENSG00000151151|ENST00000373935|IPMK;ENST00000425988.1_1_13:23411483-23411888:-|nuORF	ENSG00000151151|ENST00000373935|IPMK	ENSG00000151151|ENST00000373935|IPMK	MULTI-SECPEP	A375_MHC_IP_R1	1	402.9657897949219	3	403.227556	1206.66084	-0.15993	-6.4489E-05	-0.88114	-0.0003553	-1.0411	-0.00041979	403.2270394683878	21.479	0.2544	21.479	21.301	21.555	0					6	4	2	0	0	0	0.99732	1	5679	5679		0.32927	0	1	558270			1232	5884	771	782	1220	1220					0.06577355223294035
AEKGWDDSF	9	Unmodified	_AEKGWDDSF_					0	0	0		nc|ENSG00000172456|Q96C11-2|FGGY;ENST00000495718.5_1_1:59787394-60091722:+|nuORF;nc|ENSG00000172456|Q96C11-4|FGGY;nc|ENSG00000172456|Q96C11-5|FGGY;ENSG00000172456|ENST00000303721|FGGY;nc|ENSG00000172456|Q96C11-3|FGGY	nc|ENSG00000172456|Q96C11-2|FGGY	nc|ENSG00000172456|Q96C11-2|FGGY	MSMS	A375_MHC_IP_R1	1	527.6492309570312	2	527.727446	1053.44034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.612	1	86.612	86.112	87.112	0								0	0	0	0.15486	1	31762	31762		11.64	0.81637	1				1233	7712	772	783	1221	1221					-0.08424290104153442
AEKIVAEAI	9	Unmodified	_AEKIVAEAI_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	MULTI-MSMS	A375_MHC_IP_R2	2	472.6761779785156	2	472.276575	942.538597	-1.0037	-0.00047402	-0.36524	-0.00017249	-1.3689	-0.00064651	472.27632266894517	56.758	0.7122	57.508	57.051	57.763	0.75015					25	13	3	0	0	0	0.030891	1	21453	21453		74.2	8.726	1	3558000			1234	1078	773	784	1222	1222					0.06502938211690434
AEKKKKDEKKR	11	Unmodified	_AEKKKKDEKKR_					0	0	0			REV__ENST00000489500.1_1_22:40574127-40642121:+|nuORF	REV__ENST00000489500.1_1_22:40574127-40642121:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	694.8209838867188	2	694.422625	1386.8307	-0.86134	-0.00059814	-0.52631	-0.00036548	-1.3876	-0.00096361	694.4221178198121	132.36	2.1326	132.36	131.78	133.91	0					117	41	5	0	0	0	1.0001	1	50960	50960		2.4985	2.4985	1	86327000	+		1235	17082	774	785	1223	1223					0.1527547122566375
AEKKKKDEKKR	11	Unmodified	_AEKKKKDEKKR_					0	0	0			REV__ENST00000489500.1_1_22:40574127-40642121:+|nuORF	REV__ENST00000489500.1_1_22:40574127-40642121:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	694.422625	1386.8307	-0.64426	-0.00044739	-0.82864	-0.00057543	-1.4729	-0.0010228	694.4218904225562	132.25	1.9794	132.44	131.95	133.93	0.18953	0.039329	-0.00015407	NaN	2.4985	122	38	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64032000	+		1236	17082	774	785							0.1527547122566375
AEKLGGSAVI	10	Unmodified	_AEKLGGSAVI_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-SECPEP	A375_MHC_IP_R1	1	473.1740417480469	2	472.7742	943.533846	-0.61871	-0.00029251	0.036739	1.7369E-05	-0.58198	-0.00027514	472.77422106909086	41.09	0.50492	41.09	40.863	41.368	0					19	9	3	0	0	0	0.22444	1	14156	14156		61.09	2.4111	1	5300400			1237	7732	775	786	1224	1224					0.059820540689429436
AEKLGGSAVI	10	Unmodified	_AEKLGGSAVI_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-SECPEP	A375_MHC_IP_R2	2	473.17401123046875	2	472.7742	943.533846	-0.62548	-0.00029571	-0.18429	-8.7129E-05	-0.80978	-0.00038284	472.77417684333903	40.196	0.45647	40.97	40.777	41.234	0.77451					19	8	3	0	0	0	0.49165	1	14893	14893		49.527	13.4	1	5617000			1238	7732	775	786	1225	1225					0.059820540689429436
AEKLITQTF	9	Unmodified	_AEKLITQTF_					0	0	0		ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	MULTI-SECPEP	A375_MHC_IP_R1	1	526.1944580078125	2	525.795132	1049.57571	-0.49357	-0.00025951	-0.066418	-3.4922E-05	-0.55998	-0.00029444	525.7950712648978	57.868	1.1675	57.868	57.313	58.481	0					48	22	4	0	0	0	4.1543E-05	1	20723	20723		208.35	71.962	1	18898000			1239	1948	776	787	1226	1226					0.05290609757457787
AEKLITQTF	9	Unmodified	_AEKLITQTF_					0	0	0		ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1945190429688	2	525.795132	1049.57571	-0.89676	-0.00047151	-0.32332	-0.00017	-1.2201	-0.00064152	525.7949355471543	56.978	1.0198	57.728	57.152	58.172	0.75015					40	17	4	0	0	0	0.010039	1	21493	21493		160.69	64.323	1	28314000			1240	1948	776	787	1227	1227					0.05290609757457787
AEKLTLTYK	9	Unmodified	_AEKLTLTYK_					0	0	0			REV__tr|U7SMX9|U7SMX9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01741PE=4SV=1	REV__tr|U7SMX9|U7SMX9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01741PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1720581054688	2	533.810782	1065.60701	-0.48788	-0.00026044	-0.074455	-3.9745E-05	-0.56234	-0.00030018	534.3122578573838	51.729	0.4054	51.729	51.525	51.93	0					11	7	2	0	0	0	0.78798	1	18384	18384		7.2892	1.5288	1	971650	+		1241	28311	777	788	1228	1228					0.07683182791561194
AEKLTLTYK	9	Unmodified	_AEKLTLTYK_					0	0	0			REV__tr|U7SMX9|U7SMX9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01741PE=4SV=1	REV__tr|U7SMX9|U7SMX9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01741PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	533.810782	1065.60701	-0.84487	-0.000451	0.07009	3.7415E-05	-0.77478	-0.00041358	533.8108351264987	50.836	0.30254	51.59	51.412	51.715	0.75406	-0.06928	3.8542E-05	NaN	7.2892	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1304600	+		1242	28311	777	788							0.07683182791561194
AEKLVQLTF	9	Unmodified	_AEKLVQLTF_					0	0	0		nc|ENSG00000005469|Q9UKG9-3|CROT;ENSG00000005469|ENST00000331536|CROT	nc|ENSG00000005469|Q9UKG9-3|CROT	nc|ENSG00000005469|Q9UKG9-3|CROT	MULTI-SECPEP	A375_MHC_IP_R2	2	525.205078125	2	524.8055	1047.59645	-0.48882	-0.00025654	0.49598	0.00026029	0.0071591	3.7571E-06	525.3075440076136	83.109	1.0624	83.849	83.191	84.254	0.73962					25	20	2	0	0	0	0.11711	1	31589	31589		69.105	17.475	1	1927200			1243	894	778	789	1229	1229					0.07455200137110296
AEKLYLRSI	9	Unmodified	_AEKLYLRSI_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-SECPEP	A375_MHC_IP_R2	2	365.28521728515625	3	364.885241	1091.63389	-0.077172	-2.8159E-05	0.14468	5.2791E-05	0.067506	2.4632E-05	364.88523785195224	50.936	0.50507	51.69	51.462	51.968	0.75406					13	9	2	0	0	0	0.60917	1	19184	19184		18.373	6.8552	1	3647700			1244	1334	779	790	1230	1230					0.09174291402746348
AEKNAPAIIFI	11	Unmodified	_AEKNAPAIIFI_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35062192-35072350:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-SECPEP	A375_MHC_IP_R1	1	594.2454223632812	2	593.845156	1185.67576	-0.36227	-0.00021513	0.1236	7.3398E-05	-0.23867	-0.00014173	593.845133438285	98.991	0.6601	98.991	98.659	99.319	0					20	12	3	0	0	0	0.69831	1	36363	36363		33.445	1.4074	1	1344400			1245	6934	780	791	1231	1231					0.09034847091265874
AEKNLPDE	8	Unmodified	_AEKNLPDE_					0	0	0			REV__ENSG00000130725|ENST00000253023|UBE2M	REV__ENSG00000130725|ENST00000253023|UBE2M	MSMS	A375_MHC_IP_R2	2	458.2003173828125	2	458.224539	914.434526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.759	1	77.5	77	78	0.74052								0	0	0	0.16876	1	29145	29145		9.3474	0	1		+		1246	18559	781	792	1232	1232					-0.026113886158213973
AEKNRGKFVK	10	Unmodified	_AEKNRGKFVK_					0	0	0		tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1	tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1	tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	392.91851806640625	3	392.899773	1175.67749	0.18058	7.0949E-05	0.76554	0.00030078	0.94612	0.00037173	392.9001013087993	23.04	0.85946	23.04	22.623	23.483	0					35	16	3	0	0	0	0.70972	1	6110	6110		7.9454	4.0691	1	46518000			1247	30065	782	793	1233	1233					0.09667900899898996
AEKNTTFDTF	10	Unmodified	_AEKNTTFDTF_					0	0	0		ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-SECPEP	A375_MHC_IP_R2	2	587.1746826171875	2	587.274761	1172.53497	-0.41488	-0.00024365	2.7905	0.0016388	2.3756	0.0013951	587.2765831885496	47.45	0.6096	48.211	48.022	48.632	0.76128					13	11	2	0	0	0	0.77204	1	17833	17833		4.5289	0	1	2032300			1248	1441	783	794	1234	1234					-0.044397763528195355
AEKQWAETW	9	Unmodified	_AEKQWAETW_					0	0	0		nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;MON2|p.L1675Ffs*21|1|0.57|ENSG00000061987|chr12:62592617-62592618|-/T|frameshift_variant;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2	nc|ENSG00000061987|Q7Z3U7-2|MON2	nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-SECPEP	A375_MHC_IP_R2	2	574.240966796875	2	574.772188	1147.52982	-0.32482	-0.0001867	-1.2628	-0.00072584	-1.5876	-0.00091254	574.7710818553131	55.188	0.40764	55.939	55.779	56.187	0.75075					9	7	2	0	0	0	0.65527	1	20799	20799		17.113	4.0704	1	1117300			1249	1324	784	795	1235	1235					-0.03804035424786889
AEKRELLRL	9	Unmodified	_AEKRELLRL_					0	0	0			REV__nc|ENSG00000162520|Q9H7C4-2|SYNC	REV__nc|ENSG00000162520|Q9H7C4-2|SYNC	MULTI-MSMS	A375_MHC_IP_R2	2	376.9209899902344	3	376.568024	1126.68224	0.08399	3.1628E-05	-0.13534	-5.0965E-05	-0.051351	-1.9337E-05	376.56788490313687	35.966	0.35664	36.73	36.537	36.894	0.76338					11	6	2	0	0	0	0.3489	1	13052	13052		27.223	1.2025	1	2441800	+		1250	20261	785	796	1236	1236					0.12396785042665215
AEKRPLRTL	9	Unmodified	_AEKRPLRTL_					0	0	0		ENSG00000167173|ENST00000394987|C15orf39;nc|nan|Q6ZRI6-2|C15orf39	ENSG00000167173|ENST00000394987|C15orf39	ENSG00000167173|ENST00000394987|C15orf39	MULTI-SECPEP	A375_MHC_IP_R1	1	541.6824340820312	2	542.33529	1082.65603	-0.54718	-0.00029676	-0.11738	-6.3661E-05	-0.66457	-0.00036042	542.3350606074557	72.928	0.30243	72.928	72.83	73.132	0					7	5	2	0	0	0	0.76187	1	26606	26606		7.2892	0	1	845420			1251	7163	786	797	1237	1237					0.1180051587118669
AEKSIDNDDP	10	Unmodified	_AEKSIDNDDP_					0	0	0			REV__ENSG00000067900|ENST00000399799|ROCK1	REV__ENSG00000067900|ENST00000399799|ROCK1	MULTI-MSMS	A375_MHC_IP_R2	2	552.196044921875	2	552.2462	1102.47785	-0.76682	-0.00042348	-0.30905	-0.00017067	-1.0759	-0.00059415	552.2459008808082	27.648	0.60769	28.326	28.098	28.706	0.67857					24	11	3	0	0	0	0.71245	1	9617	9617		6.7232	6.7232	1	6086100	+		1252	16536	787	798	1238	1238					-0.06929243629178927
AEKVIGAGKSW	11	Unmodified	_AEKVIGAGKSW_					0	0	0		ENST00000530120.5_1_1:201453843-201476204:-|nuORF;ENSG00000159176|ENST00000340006|CSRP1;ENST00000527662.5_1_1:201453843-201459740:-|nuORF	ENST00000530120.5_1_1:201453843-201476204:-|nuORF	ENST00000530120.5_1_1:201453843-201476204:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	382.94866943359375	3	382.548629	1144.62406	-0.076614	-2.9308E-05	0.45624	0.00017453	0.37962	0.00014522	382.5486418409033	29.7	0.24222	29.7	29.555	29.798	0					7	4	2	0	0	0	0.076582	1	9359	9359		56.91	29.62	1	11568000			1253	6356	788	799	1239	1239					0.05753103397364612
AEKVKKYLLSH	11	Unmodified	_AEKVKKYLLSH_					0	0	0			REV__PDE2A|p.N558K|1|0.17|ENSG00000186642|chr11:72583492-72583492|A/C|missense_variant	REV__PDE2A|p.N558K|1|0.17|ENSG00000186642|chr11:72583492-72583492|A/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	439.6623840332031	3	439.2626	1314.76597	-0.14681	-6.449E-05	0.83943	0.00036873	0.69262	0.00030424	439.26254141804446	34.129	0.65881	34.129	33.898	34.557	0					32	12	4	0	0	0	0.73472	1	11219	11219		4.4062	0	1	14793000	+		1254	27753	789	800	1240	1240					0.12117896419704266
AEKWQEKMDWL	11	Unmodified	_AEKWQEKMDWL_					0	0	0		nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	MSMS	A375_MHC_IP_R2	2	488.4690246582031	3	488.571105	1462.69149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.361	1	59.11	58.61	59.61	0.74894								0	0	0	0.16334	1	22081	22081		1.3296	0	1				1255	7838	790	801	1241	1241					-0.021352344539991464
AELAGKIL	8	Unmodified	_AELAGKIL_					0	0	0		ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	MULTI-SECPEP	A375_MHC_IP_R1	1	408.1553039550781	2	407.755278	813.496004	-0.14663	-5.9788E-05	0.53968	0.00022006	0.39306	0.00016027	407.7553347305297	53.58	0.56043	53.58	53.352	53.912	0					16	10	2	0	0	0	0.69122	1	19113	19113		32.305	10.559	1	4015100			1256	5021	791	802	1242	1242					0.08179587874133176
AELAGKIL	8	Unmodified	_AELAGKIL_					0	0	0		ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	MULTI-SECPEP	A375_MHC_IP_R2	2	408.15496826171875	2	407.755278	813.496004	-0.45534	-0.00018567	0.21268	8.6723E-05	-0.24266	-9.8946E-05	407.7552478925726	52.659	0.40556	53.411	53.184	53.59	0.75225					13	7	2	0	0	0	0.51146	1	19860	19860		61.357	11.424	1	3338400			1257	5021	791	802	1243	1243					0.08179587874133176
AELAGKILSTW	11	Unmodified	_AELAGKILSTW_					0	0	0		ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	MULTI-SECPEP	A375_MHC_IP_R2	2	595.1217041015625	2	594.834788	1187.65502	-0.39705	-0.00023618	-0.68175	-0.00040553	-1.0788	-0.00064171	594.8346220614355	93.861	0.40588	94.605	94.412	94.818	0.74474					10	7	2	0	0	0	0.87221	1	35695	35695		28.234	17.41	1	1119200			1258	5021	792	803	1244	1244					0.06870256711590628
AELALQKKY	9	Unmodified	_AELALQKKY_					0	0	0		ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	MULTI-MSMS	A375_MHC_IP_R1	1	355.6097717285156	3	355.209725	1062.60735	-0.14772	-5.2471E-05	-0.20169	-7.1642E-05	-0.34941	-0.00012411	355.20960008612815	27.633	0.45507	27.633	27.432	27.887	0					26	8	4	0	0	0	0.073067	1	8412	8412		55.503	35.877	1	11636000			1259	5624	793	804	1245	1245					0.0785460251142922
AELALQKKY	9	Unmodified	_AELALQKKY_					0	0	0		ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	MULTI-SECPEP	A375_MHC_IP_R1	1	532.7105102539062	2	532.310949	1062.60735	-0.75192	-0.00040026	-0.39334	-0.00020938	-1.1453	-0.00060964	532.3107051925334	27.659	0.50521	27.659	27.432	27.937	0					14	9	2	0	0	0	0.24324	1	8433	8433		53.833	13.883	1	5259300			1260	5624	793	804	1246	1246					0.0785460251142922
AELALQKKY	9	Unmodified	_AELALQKKY_					0	0	0		ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	MULTI-MSMS	A375_MHC_IP_R2	2	355.60955810546875	3	355.209725	1062.60735	-0.35199	-0.00012503	-0.1803	-6.4044E-05	-0.53229	-0.00018907	355.2096388658743	26.995	0.41024	27.658	27.469	27.879	0.66319					20	7	3	0	0	0	0.04093	2	9180	9131;9180		67.838	34.393	1	14471000			1261	5624	793	804	1247;1248	1248					0.0785460251142922
AELALQKKY	9	Unmodified	_AELALQKKY_					0	0	0		ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	MULTI-MSMS	A375_MHC_IP_R2	2	532.71044921875	2	532.310949	1062.60735	-0.83439	-0.00044416	-0.14112	-7.5119E-05	-0.97551	-0.00051928	532.3107617895117	26.989	0.30777	27.651	27.518	27.826	0.66129					12	5	3	0	0	0	0.10637	1	9205	9205		62.573	29.787	1	3684200			1262	5624	793	804	1249	1249					0.0785460251142922
AELAPLLRR	9	Unmodified	_AELAPLLRR_					0	0	0			REV__ENST00000216733.7_1_14:23834263-23834767:-|nuORF	REV__ENST00000216733.7_1_14:23834263-23834767:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	520.2243041992188	2	519.824558	1037.63456	-0.67496	-0.00035086	0.23866	0.00012406	-0.4363	-0.0002268	519.8246478240304	66.047	0.45583	66.047	65.768	66.224	0					14	8	2	0	0	0	0.79191	1	23925	23925		1.4819	0	1	1871800	+		1263	23038	794	805	1250	1250					0.11725130842478393
AELDFEKIMH	10	Unmodified	_AELDFEKIMH_					0	0	0		ENSG00000181790|ENST00000517894|ADGRB1	ENSG00000181790|ENST00000517894|ADGRB1	ENSG00000181790|ENST00000517894|ADGRB1	MULTI-SECPEP	A375_MHC_IP_R2	2	411.2664794921875	3	411.537513	1231.59071	-0.37655	-0.00015497	0.40083	0.00016496	0.024275	9.9899E-06	411.53743382842094	29.864	0.45555	30.563	30.385	30.84	0.69872					10	8	2	0	0	0	0.92199	1	10515	10515		10.899	3.4219	1	1869500			1264	8362	795	806	1251	1251					-0.01582266436844293
AELDIPQSV	9	Unmodified	_AELDIPQSV_					0	0	0		ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1	ENSG00000104853|ENST00000337392|CLPTM1	ENSG00000104853|ENST00000337392|CLPTM1	MULTI-SECPEP	A375_MHC_IP_R1	1	486.65570068359375	2	486.25584	970.497126	-0.095072	-4.6229E-05	-0.18234	-8.8666E-05	-0.27742	-0.0001349	486.2556204642974	82.545	0.55849	82.545	82.265	82.823	0					27	10	4	0	0	0	0.24324	1	30174	30174		53.833	15.657	1	6427200			1265	2542	796	807	1252	1252					0.010697574523760522
AELDIPQSV	9	Unmodified	_AELDIPQSV_					0	0	0		ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1	ENSG00000104853|ENST00000337392|CLPTM1	ENSG00000104853|ENST00000337392|CLPTM1	MULTI-MSMS	A375_MHC_IP_R2	2	487.1571350097656	2	486.25584	970.497126	-0.65947	-0.00032067	-0.059505	-2.8934E-05	-0.71898	-0.00034961	486.25567997347014	81.867	0.86462	82.61	82.33	83.195	0.74293					30	16	3	0	0	0	0.11629	1	31094	31094		47.749	11.622	1	6077600			1266	2542	796	807	1253	1253					0.010697574523760522
AELDKDLR	8	Unmodified	_AELDKDLR_					0	0	0		ENST00000519453.3_1_8:22422780-22424177:+|nuORF;ENST00000522315.5_1_8:22422780-22424230:+|nuORF;ENST00000517535.5_1_8:22411983-22423386:+|nuORF;ENSG00000120896|ENST00000240123|SORBS3	ENST00000519453.3_1_8:22422780-22424177:+|nuORF	ENST00000519453.3_1_8:22422780-22424177:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	480.66119384765625	2	480.261456	958.50836	-0.17268	-8.2932E-05	0.091723	4.4051E-05	-0.080958	-3.8881E-05	480.2613684288926	39.162	0.30574	39.162	38.983	39.289	0					8	5	2	0	0	0	0.87643	1	13392	13392		9.3831	0	1	2544000			1267	3694	797	808	1254	1254					0.02744579546526893
AELDLVLQR	9	Unmodified	_AELDLVLQR_					0	0	0		ENSG00000053501|ENST00000263897|USE1;ENST00000600970.5_1_19:17327144-17330619:+|nuORF	ENSG00000053501|ENST00000263897|USE1	ENSG00000053501|ENST00000263897|USE1	MULTI-SECPEP	A375_MHC_IP_R1	1	529.2054443359375	2	528.806031	1055.59751	-0.48174	-0.00025475	-0.33025	-0.00017464	-0.81199	-0.00042938	528.8057838624036	72.944	0.81171	72.944	72.625	73.437	0					34	15	3	0	0	0	0.090157	1	26519	26519		67.838	24.066	1	3296600			1268	1248	798	809	1255	1255					0.07193414506014051
AELDPPGARF	10	Unmodified	_AELDPPGARF_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4;ENST00000393966.1_1_16:67315041-67322708:+|nuORF;PLEKHG4|p.F606Gfs*30|1|0.19|ENSG00000196155|chr16:67284832-67284857|CCACTTCCGAAAGATGTGGGCTCTGG/-|frameshift_variant	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1903686523438	2	536.774731	1071.53491	-0.64396	-0.00034566	-1.0423	-0.00055949	-1.6863	-0.00090516	536.7743704185474	55.764	0.55935	55.764	55.482	56.041	0					14	10	2	0	0	0	0.73104	1	19984	19984		31.268	13.122	1	2989600			1269	9008	799	810	1256	1256					0.0020026843783398363
AELDPPGARF	10	Unmodified	_AELDPPGARF_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4;ENST00000393966.1_1_16:67315041-67322708:+|nuORF;PLEKHG4|p.F606Gfs*30|1|0.19|ENSG00000196155|chr16:67284832-67284857|CCACTTCCGAAAGATGTGGGCTCTGG/-|frameshift_variant	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	536.1904907226562	2	536.774731	1071.53491	-1.0152	-0.00054491	-0.44671	-0.00023978	-1.4619	-0.00078469	536.7746131673841	55.003	0.61148	55.754	55.523	56.135	0.75075					16	11	2	0	0	0	0.81532	1	20758	20758		24.991	6.8446	1	3038300			1270	9008	799	810	1257	1257					0.0020026843783398363
AELDPPGARFL	11	Unmodified	_AELDPPGARFL_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4;ENST00000393966.1_1_16:67315041-67322708:+|nuORF;PLEKHG4|p.F606Gfs*30|1|0.19|ENSG00000196155|chr16:67284832-67284857|CCACTTCCGAAAGATGTGGGCTCTGG/-|frameshift_variant	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	593.7161865234375	2	593.316763	1184.61897	-0.30997	-0.00018391	-0.2901	-0.00017212	-0.60006	-0.00035603	593.3165566742315	83.009	0.96294	83.009	82.52	83.483	0					53	18	4	0	0	0	0.43802	4	30289	30289;30320;30466;30527		43.982	27.833	1	20327000			1271	9008	800	811	1258;1259;1260;1261	1258					0.034047995347464166
AELDPPGARFL	11	Unmodified	_AELDPPGARFL_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4;ENST00000393966.1_1_16:67315041-67322708:+|nuORF;PLEKHG4|p.F606Gfs*30|1|0.19|ENSG00000196155|chr16:67284832-67284857|CCACTTCCGAAAGATGTGGGCTCTGG/-|frameshift_variant	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	593.7174072265625	2	593.316763	1184.61897	-0.60117	-0.00035668	0.24102	0.000143	-0.36015	-0.00021368	593.3168472208885	82.304	0.91319	83.047	82.584	83.497	0.74293					48	17	4	0	0	0	0.82239	1	31175	31175		42.312	42.312	1	19743000			1272	9008	800	811	1262	1262					0.034047995347464166
AELDPVNSY	9	Unmodified	_AELDPVNSY_					0	0	0		ENSG00000101493|ENST00000443185|ZNF516	ENSG00000101493|ENST00000443185|ZNF516	ENSG00000101493|ENST00000443185|ZNF516	MULTI-MSMS	A375_MHC_IP_R1	1	504.63739013671875	2	504.237647	1006.46074	-0.26491	-0.00013358	0.54206	0.00027333	0.27715	0.00013975	504.2376523271316	62.721	0.9744	62.721	62.249	63.223	0					41	18	4	0	0	0	0.0022058	1	22635	22635		142.08	92.147	1	6981700			1273	2305	801	812	1263	1263					-0.042231194443274944
AELDPVNSY	9	Unmodified	_AELDPVNSY_					0	0	0		ENSG00000101493|ENST00000443185|ZNF516	ENSG00000101493|ENST00000443185|ZNF516	ENSG00000101493|ENST00000443185|ZNF516	MULTI-SECPEP	A375_MHC_IP_R1	1	1006.8712158203125	1	1007.46802	1006.46074	0.30548	0.00030776	-0.011612	-1.1698E-05	0.29387	0.00029607	1007.4680108014105	62.737	0.92268	62.737	62.351	63.274	0					49	17	4	0	0	0	0.090157	1	22563	22563		76.825	40.698	1	55297000			1274	2305	801	812	1264	1264					-0.042231194443274944
AELDPVNSY	9	Unmodified	_AELDPVNSY_					0	0	0		ENSG00000101493|ENST00000443185|ZNF516	ENSG00000101493|ENST00000443185|ZNF516	ENSG00000101493|ENST00000443185|ZNF516	MULTI-MSMS	A375_MHC_IP_R2	2	504.636962890625	2	504.237647	1006.46074	-0.88493	-0.00044622	0.30172	0.00015214	-0.58322	-0.00029408	504.2376247693731	62.092	0.91251	62.835	62.471	63.383	0.74263					43	17	4	0	0	0	0.0022058	1	23498	23498		142.08	104.11	1	8457900			1275	2305	801	812	1265	1265					-0.042231194443274944
AELDPVNSY	9	Unmodified	_AELDPVNSY_					0	0	0		ENSG00000101493|ENST00000443185|ZNF516	ENSG00000101493|ENST00000443185|ZNF516	ENSG00000101493|ENST00000443185|ZNF516	MULTI-SECPEP	A375_MHC_IP_R2	2	1006.8719482421875	1	1007.46802	1006.46074	-0.18676	-0.00018816	-0.28057	-0.00028267	-0.46734	-0.00047083	1007.4676323187963	62.1	1.0627	62.843	62.471	63.534	0.74263					54	20	4	0	0	0	0.0059578	1	23458	23458		173.69	101.76	1	48913000			1276	2305	801	812	1266	1266					-0.042231194443274944
AELDRQIKSF	10	Unmodified	_AELDRQIKSF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-SECPEP	A375_MHC_IP_R1	1	604.227294921875	2	603.827495	1205.64044	-0.45183	-0.00027282	0.54202	0.00032728	0.09019	5.4459E-05	603.8275688123697	40.093	0.56119	40.093	39.845	40.406	0					24	10	3	0	0	0	0.023935	1	13731	13731		109.15	41.308	1	21293000			1277	9183	802	813	1267	1267					0.04584184563464078
AELDRQIKSF	10	Unmodified	_AELDRQIKSF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-SECPEP	A375_MHC_IP_R2	2	403.287109375	3	402.887422	1205.64044	-0.084421	-3.4012E-05	-0.15523	-6.2539E-05	-0.23965	-9.6552E-05	402.88734397501577	39.316	0.8642	40.09	39.812	40.676	0.77451					52	16	6	0	0	0	0.13439	1	14474	14474		59.496	29.064	1	83326000			1278	9183	802	813	1268	1268					0.04584184563464078
AELDRQIKSF	10	Unmodified	_AELDRQIKSF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-SECPEP	A375_MHC_IP_R2	2	604.226806640625	2	603.827495	1205.64044	-0.54753	-0.00033061	0.14064	8.4922E-05	-0.40689	-0.00024569	603.8273510803403	39.317	0.66102	40.092	39.812	40.473	0.77451					32	12	4	0	0	0	0.021584	1	14493	14493		153.7	67.367	1	20959000			1279	9183	802	813	1269	1269					0.04584184563464078
AELEADEWT	9	Unmodified	_AELEADEWT_					0	0	0			REV__ENST00000520537.1_1_17:78388994-78389705:+|nuORF	REV__ENST00000520537.1_1_17:78388994-78389705:+|nuORF	MSMS	A375_MHC_IP_R1	1	532.2134399414062	2	532.232561	1062.45057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.711	1	80.711	80.211	81.211	0								0	0	0	0.15486	1	29485	29485		10.824	2.9138	1		+		1280	25700	803	814	1270	1270					-0.07815727169577258
AELEDRRQL	9	Unmodified	_AELEDRRQL_					0	0	0		ENSG00000101413|ENST00000373433|RPRD1B	ENSG00000101413|ENST00000373433|RPRD1B	ENSG00000101413|ENST00000373433|RPRD1B	MULTI-SECPEP	A375_MHC_IP_R1	1	377.6034240722656	3	377.203522	1128.58874	0.072516	2.7353E-05	0.26615	0.00010039	0.33866	0.00012774	377.2034796058484	23.816	0.60963	23.816	23.635	24.245	0					24	11	4	0	0	0	0.26374	1	6624	6624		55.235	14.51	1	22375000			1281	2290	804	815	1271	1271					0.02958440869565493
AELEDRRQL	9	Unmodified	_AELEDRRQL_					0	0	0		ENSG00000101413|ENST00000373433|RPRD1B	ENSG00000101413|ENST00000373433|RPRD1B	ENSG00000101413|ENST00000373433|RPRD1B	MULTI-MSMS	A375_MHC_IP_R2	2	377.6034851074219	3	377.203522	1128.58874	-0.15078	-5.6873E-05	-0.12103	-4.5655E-05	-0.27181	-0.00010253	377.20348199919624	23.045	0.56212	23.675	23.265	23.828	0.63014					20	10	3	0	0	0	0.13728	1	7364	7364		43.982	8.3696	1	11203000			1282	2290	804	815	1272	1272					0.02958440869565493
AELEDRRQL	9	Unmodified	_AELEDRRQL_					0	0	0		ENSG00000101413|ENST00000373433|RPRD1B	ENSG00000101413|ENST00000373433|RPRD1B	ENSG00000101413|ENST00000373433|RPRD1B	MULTI-MSMS	A375_MHC_IP_R2	2	565.7012329101562	2	565.301644	1128.58874	-0.79492	-0.00044937	0.018149	1.026E-05	-0.77677	-0.00043911	565.3016303168075	23.067	0.30696	23.697	23.47	23.777	0.63014					11	5	3	0	0	0	0.21241	1	7382	7382		32.786	3.7041	1	5218500			1283	2290	804	815	1273	1273					0.02958440869565493
AELEKAEML	9	Unmodified	_AELEKAEML_					0	0	0			REV__nc|ENSG00000176884|Q05586-2|GRIN1	REV__nc|ENSG00000176884|Q05586-2|GRIN1	MULTI-MSMS	A375_MHC_IP_R1	1	517.6632080078125	2	517.26535	1032.51615	-0.40654	-0.00021029	-2.1888	-0.0011322	-2.5953	-0.0013425	517.264205584467	54.389	0.60744	54.389	54.063	54.67	0					20	11	3	0	0	0	0.44024	1	19449	19449		22.736	3.4793	1	2395700	+		1284	21423	805	816	1274	1274					0.0011897075178239902
AELELIVQR	9	Unmodified	_AELELIVQR_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2;LAMB2|p.P645L|1|0.2|ENSG00000172037|chr3:49128542-49128542|G/A|missense_variant	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MULTI-SECPEP	A375_MHC_IP_R1	1	536.213623046875	2	535.813856	1069.61316	-1.0951	-0.00058677	-0.92499	-0.00049562	-2.0201	-0.0010824	535.8140255483054	67.901	1.4221	67.901	67.143	68.565	0					44	27	3	0	0	0	0.13244	1	24575	24575		67.838	37.998	1	7191500			1285	7673	806	817	1275	1275					0.08113701023103204
AELELIVQR	9	Unmodified	_AELELIVQR_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2;LAMB2|p.P645L|1|0.2|ENSG00000172037|chr3:49128542-49128542|G/A|missense_variant	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MULTI-SECPEP	A375_MHC_IP_R2	2	536.2132568359375	2	535.813856	1069.61316	-0.89589	-0.00048003	-1.0861	-0.00058197	-1.982	-0.001062	535.8136940583046	66.969	1.0683	67.705	67.24	68.308	0.73631					43	20	3	0	0	0	0.30925	1	25344	25344		41.956	10.687	1	6735500			1286	7673	806	817	1276	1276					0.08113701023103204
AELELLRQF	9	Unmodified	_AELELLRQF_					0	0	0		nc|ENSG00000175482|Q9HCU8-2|POLD4;ENSG00000175482|ENST00000312419|POLD4;ENST00000528087.1_1_11:67120378-67120948:-|nuORF	nc|ENSG00000175482|Q9HCU8-2|POLD4	nc|ENSG00000175482|Q9HCU8-2|POLD4	MULTI-SECPEP	A375_MHC_IP_R1	1	560.2133178710938	2	559.813856	1117.61316	-0.50117	-0.00028056	-0.28783	-0.00016113	-0.789	-0.00044169	559.8132355784586	99.247	0.65926	99.247	98.964	99.624	0					15	12	2	0	0	0	0.011236	1	36490	36490		96.367	21.438	1	1599600			1287	7963	807	818	1277	1277					0.05905701023107213
AELELLRQF	9	Unmodified	_AELELLRQF_					0	0	0		nc|ENSG00000175482|Q9HCU8-2|POLD4;ENSG00000175482|ENST00000312419|POLD4;ENST00000528087.1_1_11:67120378-67120948:-|nuORF	nc|ENSG00000175482|Q9HCU8-2|POLD4	nc|ENSG00000175482|Q9HCU8-2|POLD4	MULTI-MATCH	A375_MHC_IP_R2	2		2	559.813856	1117.61316	-0.63755	-0.00035691	0.2215	0.000124	-0.41605	-0.00023291	559.8140579430112	98.44	0.4072	99.2	98.945	99.352	0.75977	-0.023294	0.00037223	NaN	96.367	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1385500			1288	7963	807	818							0.05905701023107213
AELELQKQL	9	Unmodified	_AELELQKQL_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-SECPEP	A375_MHC_IP_R1	1	537.0978393554688	2	536.305864	1070.59717	-0.70055	-0.00037571	0.26564	0.00014246	-0.43492	-0.00023325	536.306001216167	54.847	1.0156	54.847	54.415	55.431	0					45	19	3	0	0	0	1.3986E-39	1	19595	19595		266.95	87.773	1	88578000			1289	7961	808	819	1278	1278					0.06469994786198185
AELELQKQL	9	Unmodified	_AELELQKQL_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-SECPEP	A375_MHC_IP_R2	2	537.097412109375	2	536.305864	1070.59717	-1.2083	-0.00064801	0.31035	0.00016644	-0.89793	-0.00048157	536.3059709722452	54.032	1.2735	54.783	54.353	55.627	0.75105					64	24	5	0	0	0	0.0018556	1	20447	20447		173.69	48.157	1	76789000			1290	7961	808	819	1279	1279					0.06469994786198185
AELELVDSL	9	Unmodified	_AELELVDSL_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF;SMC4|p.P1169S|1|0.25|ENSG00000113810|chr3:160432490-160432490|C/T|missense_variant	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-SECPEP	A375_MHC_IP_R1	1	495.1579284667969	2	494.763497	987.512442	-0.33442	-0.00016546	1.2038	0.00059558	0.86934	0.00043012	494.7640804660338	55.562	0.56157	55.562	55.228	55.79	0					22	10	3	0	0	0	0.16229	1	19883	19883		39.957	0	1	1921500			1291	3184	809	820	1280	1280					0.01818624249574441
AELELVLRKY	10	Unmodified	_AELELVLRKY_					0	0	0		UVSSA|p.A569Pfs*15|1|0.31|ENSG00000163945|chr4:1380182-1380182|T/-|frameshift_variant;ENSG00000163945|ENST00000389851|UVSSA	UVSSA|p.A569Pfs*15|1|0.31|ENSG00000163945|chr4:1380182-1380182|T/-|frameshift_variant	UVSSA|p.A569Pfs*15|1|0.31|ENSG00000163945|chr4:1380182-1380182|T/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	411.93994140625	3	411.911568	1232.71287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.523	1	67.259	66.759	67.759	0.73631								0	0	0	0.15411	1	25203	25203		7.4771	0.37534	1				1292	6750	810	821	1281	1281					0.10582518637056637
AELERLNKQF	10	Unmodified	_AELERLNKQF_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-SECPEP	A375_MHC_IP_R2	2	416.9629211425781	3	416.562938	1246.66699	-0.24465	-0.00010191	1.4562	0.0006066	1.2115	0.00050469	416.5630573329384	37.962	0.46342	38.737	38.483	38.946	0.77451					24	8	4	0	0	0	0.79895	1	13980	13980		28.234	9.5124	1	4948600			1293	2162	811	822	1282	1282					0.05351873454787892
AELESSKEQF	10	Unmodified	_AELESSKEQF_					0	0	0		nc|ENSG00000138698|P52306-2|RAP1GDS1;nc|ENSG00000138698|P52306-3|RAP1GDS1;nc|ENSG00000138698|P52306-4|RAP1GDS1;ENSG00000138698|ENST00000408927|RAP1GDS1;nc|ENSG00000138698|P52306-5|RAP1GDS1	nc|ENSG00000138698|P52306-2|RAP1GDS1	nc|ENSG00000138698|P52306-2|RAP1GDS1	MULTI-MSMS	A375_MHC_IP_R1	1	584.6799926757812	2	584.280043	1166.54553	-0.48118	-0.00028114	-1.4655	-0.00085624	-1.9466	-0.0011374	584.2792410885431	32.551	0.60503	32.551	32.333	32.938	0					23	11	3	0	0	0	0.011226	1	10517	10517		125.18	65.107	1	7964400			1294	5024	812	823	1283	1283					-0.03107793698382011
AELESSKEQF	10	Unmodified	_AELESSKEQF_					0	0	0		nc|ENSG00000138698|P52306-2|RAP1GDS1;nc|ENSG00000138698|P52306-3|RAP1GDS1;nc|ENSG00000138698|P52306-4|RAP1GDS1;ENSG00000138698|ENST00000408927|RAP1GDS1;nc|ENSG00000138698|P52306-5|RAP1GDS1	nc|ENSG00000138698|P52306-2|RAP1GDS1	nc|ENSG00000138698|P52306-2|RAP1GDS1	MULTI-MSMS	A375_MHC_IP_R2	2	584.6787719726562	2	584.280043	1166.54553	-0.46833	-0.00027364	-1.6802	-0.0009817	-2.1485	-0.0012553	584.2791090665112	31.837	0.50691	32.574	32.35	32.857	0.73692					21	9	3	0	0	0	0.0065506	2	11287	11262;11287		94.909	43.493	1	9233000			1295	5024	812	823	1284;1285	1285					-0.03107793698382011
AELGARAKEF	10	Unmodified	_AELGARAKEF_					0	0	0		ENSG00000151846|ENST00000281589|PABPC3;ENSG00000070756|ENST00000318607|PABPC1;nc|ENSG00000070756|P11940-2|PABPC1	ENSG00000151846|ENST00000281589|PABPC3	ENSG00000151846|ENST00000281589|PABPC3	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6951904296875	2	546.29583	1090.57711	-0.71205	-0.00038899	-0.64016	-0.00034972	-1.3522	-0.00073871	546.295735300604	27.053	0.30158	27.053	26.928	27.229	0					8	5	2	0	0	0	0.55923	1	8184	8184		32.898	11.308	1	2928200			1296	5931	813	824	1286	1286					0.03544243846226891
AELGDARKTL	10	Unmodified	_AELGDARKTL_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-SECPEP	A375_MHC_IP_R2	2	358.93634033203125	3	358.536501	1072.58767	-0.65877	-0.00023619	1.0098	0.00036207	0.35108	0.00012587	358.53697576874634	25.736	0.71084	26.396	26.094	26.805	0.65992					19	13	2	0	0	0	0.75488	1	8618	8618		12.228	2.077	1	2677500			1297	6442	814	825	1287	1287					0.054282265006804664
AELGGLLKY	9	Unmodified	_AELGGLLKY_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	A375_MHC_IP_R1	1	482.67919921875	2	482.279118	962.543683	-0.22953	-0.0001107	-0.021605	-1.042E-05	-0.25113	-0.00012112	482.2790734270843	79.136	1.2785	79.136	78.807	80.086	0					70	24	5	0	0	0	0.015356	1	28835	28835		89.401	9.8044	1	64634000			1298	2828	815	826	1288	1288					0.06091242074330694
AELGGLLKY	9	Unmodified	_AELGGLLKY_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	A375_MHC_IP_R2	2	482.6788330078125	2	482.279118	962.543683	-0.54103	-0.00026093	-0.15806	-7.6231E-05	-0.69909	-0.00033716	482.2789912404446	78.261	1.2186	79.004	78.676	79.894	0.74293					58	23	4	0	0	0	0.0099737	2	29682	29682;29886		96.367	16.77	1	48864000			1299	2828	815	826	1289;1290	1289					0.06091242074330694
AELGIRHVL	9	Unmodified	_AELGIRHVL_					0	0	0		ENSG00000108106|ENST00000264552|UBE2S	ENSG00000108106|ENST00000264552|UBE2S	ENSG00000108106|ENST00000264552|UBE2S	MULTI-SECPEP	A375_MHC_IP_R1	1	503.6673583984375	2	504.303458	1006.59236	-0.097154	-4.8995E-05	-0.35385	-0.00017845	-0.45101	-0.00022744	504.30309380131393	48.065	0.25325	48.065	47.97	48.223	0					7	4	2	0	0	0	0.76827	1	16919	16919		3.5965	1.5367	1	986150			1300	2785	816	827	1291	1291					0.08933155434078799
AELGKSVVY	9	Unmodified	_AELGKSVVY_					0	0	0		nc|ENSG00000161542|Q14558|PRPSAP1;ENSG00000161542|ENST00000446526|PRPSAP1	nc|ENSG00000161542|Q14558|PRPSAP1	nc|ENSG00000161542|Q14558|PRPSAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6683654785156	2	483.26875	964.522947	-0.83491	-0.00040349	0.34036	0.00016448	-0.49455	-0.000239	483.26881256613535	41.091	0.91377	41.865	41.285	42.198	0.77451					29	17	3	0	0	0	0.49205	1	15143	15143		27.629	6.0918	1	11321000			1301	6475	817	828	1292	1292					0.03926651694666816
AELGKYNGLEF	11	Unmodified	_AELGKYNGLEF_					0	0	0			REV__tr|U7T185|U7T185_FUSNUTriggerfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tigPE=3SV=1	REV__tr|U7T185|U7T185_FUSNUTriggerfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tigPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	621.2139892578125	2	620.814053	1239.61355	-0.7952	-0.00049367	0.60923	0.00037822	-0.18597	-0.00011546	620.8144007615272	67.672	0.45461	67.672	67.449	67.904	0					21	8	3	0	0	0	0.51751	1	24518	24518		49.527	25.737	1	5780800	+		1302	28698	818	829	1293	1293					0.00333075952244144
AELGKYNGLEF	11	Unmodified	_AELGKYNGLEF_					0	0	0			REV__tr|U7T185|U7T185_FUSNUTriggerfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tigPE=3SV=1	REV__tr|U7T185|U7T185_FUSNUTriggerfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tigPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	621.2140502929688	2	620.814053	1239.61355	-0.7731	-0.00047995	0.092146	5.7205E-05	-0.68096	-0.00042275	620.814101540294	66.983	0.65903	67.719	67.445	68.104	0.73631					24	12	3	0	0	0	0.45335	1	25359	25359		42.312	23.939	1	6474700	+		1303	28698	818	829	1294	1294					0.00333075952244144
AELGTFPRAF	10	Unmodified	_AELGTFPRAF_					0	0	0		ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	MULTI-SECPEP	A375_MHC_IP_R1	1	555.193115234375	2	554.792924	1107.57129	-0.5162	-0.00028639	0.80362	0.00044584	0.28742	0.00015946	554.7934768664132	83.158	0.5569	83.158	82.823	83.38	0					24	10	3	0	0	0	0.38298	1	30410	30410		76.825	55.078	1	2732200			1304	8733	819	830	1295	1295					0.021811453345662812
AELGTRGVL	9	Unmodified	_AELGTRGVL_					0	0	0		ENST00000520134.1_1_5:179228789-179233279:-|nuORF;ENST00000519616.1_1_5:179228908-179233279:-|nuORF;ENST00000520019.1_1_5:179229676-179233279:-|nuORF	ENST00000520134.1_1_5:179228789-179233279:-|nuORF	ENST00000520134.1_1_5:179228789-179233279:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	458.6666564941406	2	458.266542	914.51853	-0.36342	-0.00016654	0.1993	9.1333E-05	-0.16412	-7.5209E-05	458.2665527785306	46.708	0.65788	46.708	46.345	47.003	0					20	12	2	0	0	0	0.19747	1	16387	16387		38.176	4.0731	1	3686800			1305	12980	820	831	1296	1296					0.05785187271760606
AELGTRGVL	9	Unmodified	_AELGTRGVL_					0	0	0		ENST00000520134.1_1_5:179228789-179233279:-|nuORF;ENST00000519616.1_1_5:179228908-179233279:-|nuORF;ENST00000520019.1_1_5:179229676-179233279:-|nuORF	ENST00000520134.1_1_5:179228789-179233279:-|nuORF	ENST00000520134.1_1_5:179228789-179233279:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	458.6661682128906	2	458.266542	914.51853	-0.3252	-0.00014903	-0.07054	-3.2326E-05	-0.39574	-0.00018135	458.2664381901056	45.712	0.60372	46.478	46.201	46.805	0.76519					18	11	2	0	0	0	0.34746	1	17084	17084		38.176	11.292	1	4851100			1306	12980	820	831	1297	1297					0.05785187271760606
AELIWETY	8	Unmodified	_AELIWETY_					0	0	0			REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B;REV__ENSG00000083168|ENST00000265713|KAT6A	REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B	MSMS	A375_MHC_IP_R1	1	512.66845703125	2	512.752933	1023.49131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.045	1	27.045	26.545	27.545	0								0	0	0	0.16876	1	8143	8143		30.225	8.4782	1		+		1307	19991;16800	821	832	1298	1298					-0.01949341059287235
AELKPGRPHQF	11	Unmodified	_AELKPGRPHQF_					0	0	0		ENSG00000176871|ENST00000315436|WSB2;nc|ENSG00000176871|Q9NYS7-2|WSB2	ENSG00000176871|ENST00000315436|WSB2	ENSG00000176871|ENST00000315436|WSB2	MULTI-MSMS	A375_MHC_IP_R1	1	427.635009765625	3	427.235045	1278.6833	0.19112	8.1654E-05	-0.30924	-0.00013212	-0.11812	-5.0464E-05	427.23491581833713	21.973	0.40699	21.973	21.757	22.164	0					11	7	2	0	0	0	0.34239	1	5852	5852		43.477	31.959	1	2373500			1308	8035	822	833	1299	1299					0.055109994115582595
AELKQAQTL	9	Unmodified	_AELKQAQTL_					0	0	0		ENST00000565834.1_1_15:75631960-75632343:+|nuORF;ENSG00000140365|ENST00000267935|COMMD4	ENST00000565834.1_1_15:75631960-75632343:+|nuORF	ENST00000565834.1_1_15:75631960-75632343:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	501.6846008300781	2	501.284931	1000.55531	-0.67051	-0.00033612	-0.18637	-9.3422E-05	-0.85688	-0.00042954	501.2848603382063	29.017	0.60776	29.017	28.795	29.403	0					24	11	3	0	0	0	0.03341	1	9029	9029		103.42	38.184	1	9459600			1309	5145	823	834	1300	1300					0.05505439097669296
AELKQAQTL	9	Unmodified	_AELKQAQTL_					0	0	0		ENST00000565834.1_1_15:75631960-75632343:+|nuORF;ENSG00000140365|ENST00000267935|COMMD4	ENST00000565834.1_1_15:75631960-75632343:+|nuORF	ENST00000565834.1_1_15:75631960-75632343:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	501.6844482421875	2	501.284931	1000.55531	-0.97413	-0.00048832	0.15441	7.7402E-05	-0.81972	-0.00041091	501.2849508217595	28.344	0.40581	29.022	28.808	29.214	0.67857					17	7	3	0	0	0	0.016541	1	9759	9759		117.76	49.68	1	9412000			1310	5145	823	834	1301	1301					0.05505439097669296
AELKQLNQQY	10	Unmodified	_AELKQLNQQY_					0	0	0		ENSG00000115942|ENST00000234296|ORC2	ENSG00000115942|ENST00000234296|ORC2	ENSG00000115942|ENST00000234296|ORC2	MULTI-MSMS	A375_MHC_IP_R1	1	618.224853515625	2	617.824952	1233.63535	-0.46279	-0.00028593	-0.060935	-3.7647E-05	-0.52373	-0.00032357	617.8249715473838	36.988	0.40279	36.988	36.745	37.148	0					12	7	2	0	0	0	0.0065146	1	12449	12449		103.82	53.891	1	3527200			1311	3352	824	835	1302	1302					0.027878807008619333
AELKQLNQQY	10	Unmodified	_AELKQLNQQY_					0	0	0		ENSG00000115942|ENST00000234296|ORC2	ENSG00000115942|ENST00000234296|ORC2	ENSG00000115942|ENST00000234296|ORC2	MULTI-MSMS	A375_MHC_IP_R2	2	618.2250366210938	2	617.824952	1233.63535	-0.79177	-0.00048918	-0.068764	-4.2484E-05	-0.86053	-0.00053166	617.8249785454377	36.232	0.40845	37.003	36.799	37.207	0.7709					15	7	3	0	0	0	0.00034917	1	13201	13201		151.48	107.71	1	4417700			1312	3352	824	835	1303	1303					0.027878807008619333
AELKQVQTL	9	Unmodified	_AELKQVQTL_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	A375_MHC_IP_R1	1	515.700439453125	2	515.300581	1028.58661	-0.76579	-0.00039461	0.55589	0.00028645	-0.20989	-0.00010816	515.3007688604018	39.803	0.45732	39.803	39.592	40.05	0					13	8	2	0	0	0	0.025037	1	13648	13648		100.09	40.017	1	5094700			1313	4099;14587	825	836	1304	1304					0.07346012131779389
AELKQVQTL	9	Unmodified	_AELKQVQTL_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	A375_MHC_IP_R2	2	515.7005615234375	2	515.300581	1028.58661	-0.97486	-0.00050235	0.096246	4.9595E-05	-0.87862	-0.00045275	515.3006480460677	39.049	0.40887	39.824	39.556	39.965	0.77451					16	7	3	0	0	0	0.011004	1	14395	14395		110.79	67.02	1	2898100			1314	4099;14587	825	836	1305	1305					0.07346012131779389
AELLAARSA	9	Unmodified	_AELLAARSA_					0	0	0			REV__tr|U7T5V6|U7T5V6_FUSNULambdafamilyphageportalproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00099PE=4SV=1	REV__tr|U7T5V6|U7T5V6_FUSNULambdafamilyphageportalproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00099PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	451.6588134765625	2	451.258717	900.50288	-0.072043	-3.251E-05	0.29519	0.00013321	0.22314	0.0001007	451.25874063728924	56.718	0.76205	56.718	56.397	57.159	0					22	14	2	0	0	0	0.17338	1	20341	20341		39.95	1.7741	1	1723300	+		1315	28838	826	837	1306	1306					0.04864900754705559
AELLFSAKKF	10	Unmodified	_AELLFSAKKF_					0	0	0		ENST00000564657.1_3_16:75656550-75656655:-|nuORF	ENST00000564657.1_3_16:75656550-75656655:-|nuORF	ENST00000564657.1_3_16:75656550-75656655:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	385.6252136230469	3	385.225375	1152.6543	0.37743	0.0001454	0.17243	6.6423E-05	0.54986	0.00021182	385.22535259509044	62.709	0.56304	62.709	62.403	62.966	0					28	10	4	0	0	0	0.57132	1	22633	22633		23.016	15.539	1	4922300			1316	13537	827	838	1307	1307					0.08407462062541526
AELLFSAKKF	10	Unmodified	_AELLFSAKKF_					0	0	0		ENST00000564657.1_3_16:75656550-75656655:-|nuORF	ENST00000564657.1_3_16:75656550-75656655:-|nuORF	ENST00000564657.1_3_16:75656550-75656655:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	385.6250305175781	3	385.225375	1152.6543	-0.43295	-0.00016678	0.23352	8.9957E-05	-0.19943	-7.6826E-05	385.2253837275929	61.746	0.55399	62.489	62.17	62.724	0.74298					27	10	4	0	0	0	0.48194	1	23397	23397		29.281	21.336	1	5369900			1317	13537	827	838	1308	1308					0.08407462062541526
AELLFSAKKF	10	Unmodified	_AELLFSAKKF_					0	0	0		ENST00000564657.1_3_16:75656550-75656655:-|nuORF	ENST00000564657.1_3_16:75656550-75656655:-|nuORF	ENST00000564657.1_3_16:75656550-75656655:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	577.1265869140625	2	577.334424	1152.6543	-0.47393	-0.00027362	-0.39151	-0.00022603	-0.86544	-0.00049965	577.3341079459841	61.748	0.50301	62.491	62.17	62.673	0.74286					13	9	2	0	0	0	0.79938	1	23402	23402		27.223	27.223	1	1397900			1318	13537	827	838	1309	1309					0.08407462062541526
AELLGRLARG	10	Unmodified	_AELLGRLARG_					0	0	0		nc|ENSG00000103150|O95822-2|MLYCD;ENSG00000103150|ENST00000262430|MLYCD	nc|ENSG00000103150|O95822-2|MLYCD	nc|ENSG00000103150|O95822-2|MLYCD	MULTI-MSMS	A375_MHC_IP_R1	1	352.94854736328125	3	352.548852	1054.62473	-0.20447	-7.2086E-05	0.090275	3.1826E-05	-0.1142	-4.0259E-05	352.5487649578906	40.969	0.40218	40.969	40.813	41.215	0					11	7	2	0	0	0	0.36703	1	14137	14137		24.882	7.0184	1	2081700			1319	2424	828	839	1310	1310					0.09959942837076596
AELLGRLARG	10	Unmodified	_AELLGRLARG_					0	0	0		nc|ENSG00000103150|O95822-2|MLYCD;ENSG00000103150|ENST00000262430|MLYCD	nc|ENSG00000103150|O95822-2|MLYCD	nc|ENSG00000103150|O95822-2|MLYCD	MULTI-MSMS	A375_MHC_IP_R2	2	352.9485778808594	3	352.548852	1054.62473	-0.28062	-9.8931E-05	-0.27545	-9.7111E-05	-0.55607	-0.00019604	352.54868591490225	40.079	0.40592	40.854	40.676	41.082	0.77451					10	7	2	0	0	0	0.57505	1	14857	14857		14.957	0.73899	1	3296100			1320	2424	828	839	1311	1311					0.09959942837076596
AELLKKEKI	9	Unmodified	_AELLKKEKI_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	A375_MHC_IP_R1	1	358.2969665527344	3	357.897258	1070.66995	-0.18631	-6.6679E-05	-0.17971	-6.4319E-05	-0.36602	-0.000131	357.8971442002747	23.932	0.71189	23.932	23.635	24.347	0					27	13	4	0	0	0	0.095445	1	6680	6680		51.488	17.266	1	14512000			1321	6745	829	840	1312	1312					0.1374374857962266
AELLQVANY	9	Unmodified	_AELLQVANY_					0	0	0		nc|ENSG00000072682|O15460|P4HA2;ENSG00000072682|ENST00000360568|P4HA2	nc|ENSG00000072682|O15460|P4HA2	nc|ENSG00000072682|O15460|P4HA2	MULTI-SECPEP	A375_MHC_IP_R1	1	511.17120361328125	2	510.771657	1019.52876	-0.6766	-0.00034559	-0.010989	-5.6128E-06	-0.68759	-0.0003512	510.77167689924545	90.537	0.81327	90.537	90.133	90.946	0					35	15	4	0	0	0	0.013591	1	33265	33265		118.07	42.308	1	5784700			1322	1543	830	841	1313	1313					0.01977750206322071
AELLQVANY	9	Unmodified	_AELLQVANY_					0	0	0		nc|ENSG00000072682|O15460|P4HA2;ENSG00000072682|ENST00000360568|P4HA2	nc|ENSG00000072682|O15460|P4HA2	nc|ENSG00000072682|O15460|P4HA2	MULTI-SECPEP	A375_MHC_IP_R2	2	511.1716003417969	2	510.771657	1019.52876	-0.65616	-0.00033515	0.29627	0.00015133	-0.35989	-0.00018382	510.7717775658093	89.891	0.71648	90.623	90.236	90.953	0.7318					32	13	4	0	0	0	0.011236	1	34167	34167		129.77	44.131	1	6998100			1323	1543	830	841	1314	1314					0.01977750206322071
AELNAEDQNRW	11	Unmodified	_AELNAEDQNRW_					0	0	0		ENSG00000129757|ENST00000440480|CDKN1C;nc|ENSG00000129757|P49918|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	MULTI-MSMS	A375_MHC_IP_R1	1	673.7098388671875	2	673.310197	1344.60584	-0.86252	-0.00058075	0.32025	0.00021563	-0.54227	-0.00036512	673.3103908452434	41.145	0.55706	41.145	40.913	41.47	0					30	10	4	0	0	0	2.5868999999999997E-21	1	14152	14152		218.93	218.93	1	13754000			1324	4211	831	842	1315	1315					-0.05267683315287286
AELNAEDQNRW	11	Unmodified	_AELNAEDQNRW_					0	0	0		ENSG00000129757|ENST00000440480|CDKN1C;nc|ENSG00000129757|P49918|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	MULTI-MSMS	A375_MHC_IP_R2	2	673.7098388671875	2	673.310197	1344.60584	-0.81089	-0.00054598	0.0076911	5.1785E-06	-0.8032	-0.0005408	673.3101519497415	40.477	0.50924	41.252	40.98	41.489	0.77451					25	9	3	0	0	0	7.7132E-17	1	14958	14958		196.06	167.56	1	14631000			1325	4211	831	842	1316	1316					-0.05267683315287286
AELNFFQRI	9	Unmodified	_AELNFFQRI_					0	0	0		nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-5|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1;nc|ENSG00000126858|Q8IXI2-6|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	MULTI-MSMS	A375_MHC_IP_R1	1	569.7056884765625	2	569.306198	1136.59784	-0.32025	-0.00018232	-0.32075	-0.0001826	-0.641	-0.00036492	569.3059879971672	99.203	0.55911	99.203	98.914	99.473	0					28	10	3	0	0	0	0.02114	1	36416	36416		82.529	34.781	1	6026200			1326	4065	832	843	1317	1317					0.035008342259061465
AELNFFQRI	9	Unmodified	_AELNFFQRI_					0	0	0		nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-5|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1;nc|ENSG00000126858|Q8IXI2-6|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	MULTI-MSMS	A375_MHC_IP_R2	2	569.7057495117188	2	569.306198	1136.59784	-0.32724	-0.0001863	0.48095	0.00027381	0.15371	8.751E-05	569.3063091726999	98.339	0.71207	99.099	98.691	99.403	0.75977					28	13	3	0	0	0	0.0099737	1	37267	37267		96.367	40.19	1	6399100			1327	4065	832	843	1318	1318					0.035008342259061465
AELNHMAEV	9	Unmodified	_AELNHMAEV_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;ENST00000532027.5_1_11:6568031-6569307:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9803161621094	2	507.239667	1012.46478	-1.1244	-0.00057035	-2.6921	-0.0013655	-3.8165	-0.0019359	507.2385096468792	38.53	0.35389	39.304	38.997	39.351	0.77451					8	6	2	0	0	0	0.55359	1	14061	14061		28.487	15.955	1	775100			1328	8235	833	844	1319	1319					-0.04095353222260201
AELNHMAEV	9	Unmodified	_AELNHMAEV_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;ENST00000532027.5_1_11:6568031-6569307:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MATCH	A375_MHC_IP_R1	1		2	507.239667	1012.46478	-0.2623	-0.00013305	-3.0801	-0.0015623	-3.3424	-0.0016954	507.2380039212879	39.314	0.20396	39.314	39.136	39.34	0	0.0048109	-6.6481E-05	NaN	28.487	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	836320			1329	8235	833	844							-0.04095353222260201
AELNVDTHHV	10	Unmodified	_AELNVDTHHV_					0	0	0			REV__CCDC73|p.V569A|1|0.35|ENSG00000186714|chr11:32614612-32614612|A/G|missense_variant	REV__CCDC73|p.V569A|1|0.35|ENSG00000186714|chr11:32614612-32614612|A/G|missense_variant	MSMS	A375_MHC_IP_R1	1	567.679931640625	2	567.780544	1133.54654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.05	1	131.05	130.55	131.55	0								0	0	0	0.14179	1	50523	50523		29.082	5.061	1		+		1330	15597	834	845	1320	1320					-0.014895345388140413
AELNVQINW	9	Unmodified	_AELNVQINW_					0	0	0			REV__ENST00000446618.1_1_22:19245879-19246326:+|nuORF	REV__ENST00000446618.1_1_22:19245879-19246326:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	362.6205139160156	3	362.857463	1085.55056	-0.46259	-0.00016785	0.52997	0.00019231	0.067385	2.4451E-05	363.1918849898269	38.601	0.40785	39.376	39.2	39.607	0.77451					14	7	3	0	0	0	0.74169	1	14237	14237		11.495	3.8858	1	2723000	+		1331	24856	835	846	1321	1321					0.011205549548776617
AELPGVSRW	9	Unmodified	_AELPGVSRW_					0	0	0		nc|ENSG00000167397|Q9BQB6-3|VKORC1;nc|ENSG00000167397|Q9BQB6-2|VKORC1	nc|ENSG00000167397|Q9BQB6-3|VKORC1	nc|ENSG00000167397|Q9BQB6-3|VKORC1	MULTI-SECPEP	A375_MHC_IP_R1	1	508.17144775390625	2	507.771991	1013.52943	-0.59141	-0.0003003	0.30003	0.00015235	-0.29138	-0.00014795	507.7720437609174	66.385	0.76324	66.385	66.072	66.836	0					26	14	2	0	0	0	0.27114	1	24007	24007		45.74	23.993	1	16990000			1332	14746	836	847	1322	1322					0.02320589646035387
AELPGVSRW	9	Unmodified	_AELPGVSRW_					0	0	0		nc|ENSG00000167397|Q9BQB6-3|VKORC1;nc|ENSG00000167397|Q9BQB6-2|VKORC1	nc|ENSG00000167397|Q9BQB6-3|VKORC1	nc|ENSG00000167397|Q9BQB6-3|VKORC1	MULTI-SECPEP	A375_MHC_IP_R2	2	508.1720886230469	2	507.771991	1013.52943	-0.89954	-0.00045676	0.16323	8.2882E-05	-0.73631	-0.00037388	507.77201608081793	65.561	1.0706	66.299	66.018	67.089	0.73811					28	20	2	0	0	0	0.41731	1	24812	24812		42.312	26.465	1	18142000			1333	14746	836	847	1323	1323					0.02320589646035387
AELPKREHL	9	Unmodified	_AELPKREHL_					0	0	0		nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C;ENSG00000152457|ENST00000378278|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	MULTI-MSMS	A375_MHC_IP_R2	2	365.27685546875	3	364.876857	1091.60874	-0.4474	-0.00016325	0.73929	0.00026975	0.29189	0.0001065	364.87711407697554	29.846	0.65551	30.545	30.134	30.79	0.69872					28	12	3	0	0	0	0.44183	1	10441	10441		22.658	0	1	5583800			1334	5966	837	848	1324	1324					0.06660236600191638
AELPKREHL	9	Unmodified	_AELPKREHL_					0	0	0		nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C;ENSG00000152457|ENST00000378278|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	MULTI-MATCH	A375_MHC_IP_R1	1		3	364.876857	1091.60874	-0.1084	-3.9553E-05	0.90244	0.00032928	0.79404	0.00028973	364.8771544764735	30.495	0.65707	30.495	30.251	30.908	0	-0.024702	7.3062E-05	NaN	22.658	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4306000			1335	5966	837	848							0.06660236600191638
AELPLDYKF	9	Unmodified	_AELPLDYKF_					0	0	0		ENSG00000178425|ENST00000319550|NT5DC1;nc|ENSG00000178425|Q5TFE4-2|NT5DC1	ENSG00000178425|ENST00000319550|NT5DC1	ENSG00000178425|ENST00000319550|NT5DC1	MULTI-SECPEP	A375_MHC_IP_R1	1	548.6892700195312	2	548.289682	1094.56481	-0.66792	-0.00036621	0.078073	4.2807E-05	-0.58984	-0.00032341	548.2896331450319	91.326	0.60747	91.326	90.997	91.604	0					35	11	4	0	0	0	0.090157	1	33522	33522		76.825	32.966	1	13587000			1336	8160	838	849	1325	1325					0.021312073831722955
AELPLDYKF	9	Unmodified	_AELPLDYKF_					0	0	0		ENSG00000178425|ENST00000319550|NT5DC1;nc|ENSG00000178425|Q5TFE4-2|NT5DC1	ENSG00000178425|ENST00000319550|NT5DC1	ENSG00000178425|ENST00000319550|NT5DC1	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6893310546875	2	548.289682	1094.56481	-0.68073	-0.00037324	0.17897	9.8129E-05	-0.50175	-0.00027511	548.2897353200669	90.592	0.71068	91.327	90.956	91.666	0.73451					33	13	4	0	0	0	0.13244	1	34437	34437		67.838	31.711	1	10194000			1337	8160	838	849	1326	1326					0.021312073831722955
AELPPLRP	8	Unmodified	_AELPPLRP_					0	0	0			REV__ENST00000531828.5_2_1:52195540-52195678:+|nuORF	REV__ENST00000531828.5_2_1:52195540-52195678:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	447.1661682128906	2	446.766178	891.517802	-0.40626	-0.0001815	0.26751	0.00011951	-0.13875	-6.1988E-05	446.7662604723439	30.353	0.7075	30.353	30.15	30.857	0					19	13	2	0	0	0	0.84748	1	9629	9629		36.044	11.37	1	6894300	+		1338	23917	839	850	1327	1327					0.06770392622695454
AELPPLRP	8	Unmodified	_AELPPLRP_					0	0	0			REV__ENST00000531828.5_2_1:52195540-52195678:+|nuORF	REV__ENST00000531828.5_2_1:52195540-52195678:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	447.16571044921875	2	446.766178	891.517802	-0.83826	-0.00037451	0.22317	9.9706E-05	-0.61509	-0.0002748	446.766236631932	29.757	0.60477	30.456	30.134	30.739	0.69872					25	11	3	0	0	0	0.84748	1	10405	10405		36.044	19.102	1	6464900	+		1339	23917	839	850	1328	1328					0.06770392622695454
AELQEGARQK	10	Unmodified	_AELQEGARQK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-SECPEP	A375_MHC_IP_R2	2	377.603515625	3	377.203522	1128.58874	-0.086413	-3.2595E-05	0.79085	0.00029831	0.70443	0.00026571	377.2036761906644	23.696	0.50937	24.327	24.079	24.588	0.63014					13	9	3	0	0	0	0.76455	1	7701	7701		27.129	0	1	2755800			1340	3526	840	851	1329	1329					0.02958440869565493
AELQFGKQI	9	Unmodified	_AELQFGKQI_					0	0	0		nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9;ENST00000515773.5_1_6:43164260-43192180:+|nuORF;ENST00000502937.5_1_6:43174127-43181466:+|nuORF;ENST00000505172.5_1_6:43174127-43181391:+|nuORF	nc|ENSG00000112659|Q8IWT3-3|CUL9	nc|ENSG00000112659|Q8IWT3-3|CUL9	MULTI-MSMS	A375_MHC_IP_R1	1	517.6873168945312	2	517.287474	1032.5604	-0.42402	-0.00021934	-0.40726	-0.00021067	-0.83128	-0.00043001	517.2870004812119	56.151	0.55627	56.151	55.891	56.447	0					19	10	3	0	0	0	0.050868	1	20133	20133		63.961	17.94	1	1764400			1341	3099	841	852	1330	1330					0.04541742960304873
AELREYKDRKV	11	Unmodified	_AELREYKDRKV_					0	0	0			REV__ENSG00000205413|ENST00000379958|SAMD9	REV__ENSG00000205413|ENST00000379958|SAMD9	MULTI-SECPEP	A375_MHC_IP_R2	2	469.1844787597656	3	469.596531	1405.76776	-0.76694	-0.00036015	-0.13398	-6.2915E-05	-0.90092	-0.00042307	469.5964012530563	39.144	0.307	39.918	39.76	40.067	0.77451					10	5	2	0	0	0	1.0004	1	14465	14465		1.2148	0	1	1922200	+		1342	22573	842	853	1331	1331					0.08110905437638394
AELRKGSF	8	Unmodified	_AELRKGSF_					0	0	0			REV__nc|ENSG00000061938|Q07912-3|TNK2;REV__ENST00000464041.5_1_3:195605455-195619614:-|nuORF	REV__nc|ENSG00000061938|Q07912-3|TNK2	MULTI-MSMS	A375_MHC_IP_R2	2	454.65350341796875	2	454.253434	906.492316	-0.2427	-0.00011025	0.17442	7.9231E-05	-0.068281	-3.1017E-05	454.2533947048326	31.632	0.6093	32.369	32.095	32.704	0.73691					22	11	3	0	0	0	0.77028	1	11207	11207		14.838	0	1	3568000	+		1343	16453;25006	843	854	1332	1332					0.03532918100290772
AELRWSTRT	9	Unmodified	_AELRWSTRT_					0	0	0			REV__LTR8_dup2971|chr17:8380695-8381392:+|3.434572253229892|0.2447948664736123|3.81|472.0|58|3|anti-sense	REV__LTR8_dup2971|chr17:8380695-8381392:+|3.434572253229892|0.2447948664736123|3.81|472.0|58|3|anti-sense	MULTI-SECPEP	A375_MHC_IP_R2	2	374.26837158203125	3	373.868362	1118.58326	-0.23635	-8.8363E-05	-0.5167	-0.00019318	-0.75304	-0.00028154	373.8684555247635	37.134	0.71012	37.905	37.461	38.171	0.7709					20	13	2	0	0	0	0.49205	1	13588	13588		26.021	0	1	6050800	+		1344	26968	844	855	1333	1333					0.028707620777595366
AELSAQIRY	9	Unmodified	_AELSAQIRY_					0	0	0		ENSG00000161920|ENST00000293777|MED11	ENSG00000161920|ENST00000293777|MED11	ENSG00000161920|ENST00000293777|MED11	MULTI-SECPEP	A375_MHC_IP_R1	1	526.182373046875	2	525.782556	1049.55056	-0.32588	-0.00017134	-0.56028	-0.00029458	-0.88616	-0.00046593	525.7823176146436	49.953	0.91758	49.953	49.439	50.357	0					31	17	3	0	0	0	0.025037	1	17655	17655		90.135	23.678	1	5905600			1345	6494	845	856	1334	1334					0.027765549549030766
AELSAQIRY	9	Unmodified	_AELSAQIRY_					0	0	0		ENSG00000161920|ENST00000293777|MED11	ENSG00000161920|ENST00000293777|MED11	ENSG00000161920|ENST00000293777|MED11	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1820678710938	2	525.782556	1049.55056	-0.69944	-0.00036775	-0.30299	-0.00015931	-1.0024	-0.00052706	525.7823638781235	49.195	0.70826	49.953	49.639	50.348	0.75737					29	13	3	0	0	0	0.019499	1	18478	18478		103.42	24.691	1	6572200			1346	6494	845	856	1335	1335					0.027765549549030766
AELSDYRRL	9	Unmodified	_AELSDYRRL_					0	0	0		ENSG00000239306|ENST00000310137|RBM14	ENSG00000239306|ENST00000310137|RBM14	ENSG00000239306|ENST00000310137|RBM14	MULTI-SECPEP	A375_MHC_IP_R1	1	375.26837158203125	3	374.86825	1121.58292	0.33282	0.00012476	-0.22989	-8.618E-05	0.10293	3.8585E-05	374.8681154911558	36.14	0.45726	36.14	35.881	36.339	0					15	8	2	0	0	0	0.32966	1	12082	12082		49.527	17.49	1	5556300			1347	9764	846	857	1336	1336					0.026993423579142473
AELSDYRRL	9	Unmodified	_AELSDYRRL_					0	0	0		ENSG00000239306|ENST00000310137|RBM14	ENSG00000239306|ENST00000310137|RBM14	ENSG00000239306|ENST00000310137|RBM14	MULTI-SECPEP	A375_MHC_IP_R2	2	375.2683410644531	3	374.86825	1121.58292	0.077075	2.8893E-05	0.00678	2.5416E-06	0.083855	3.1435E-05	374.86819433765487	35.318	0.50441	36.081	35.829	36.333	0.76338					23	9	3	0	0	0	0.32966	1	12781	12781		42.312	3.6977	1	6829600			1348	9764	846	857	1337	1337					0.026993423579142473
AELSIDLFHN	10	Unmodified	_AELSIDLFHN_					0	0	0			REV__ENST00000474707.1_1_9:125835857-125839047:+|nuORF	REV__ENST00000474707.1_1_9:125835857-125839047:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	387.5865478515625	3	386.864506	1157.57169	0.20581	7.9622E-05	-2.1461	-0.00083023	-1.9402	-0.00075061	387.198140011534	28.385	0.60504	28.385	27.987	28.592	0					14	11	2	0	0	0	0.91556	1	8745	8745		8.9762	0.22446	1	1868100	+		1349	16211	847	858	1338	1338					-0.0007947973622322024
AELSVMKSL	9	Unmodified	_AELSVMKSL_					0	0	0			REV__ENST00000496968.5_1_7:143997625-144008999:-|nuORF	REV__ENST00000496968.5_1_7:143997625-144008999:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	489.6684265136719	2	489.270435	976.526318	-0.16388	-8.0183E-05	-0.90544	-0.000443	-1.0693	-0.00052319	489.2686735152483	79.15	0.50816	79.15	78.859	79.367	0					20	9	3	0	0	0	0.61998	1	28934	28934		13.906	0.86358	1	1456800	+		1350	25066	848	859	1339	1339					0.037115784770321625
AELSVMKSL	9	Unmodified	_AELSVMKSL_					0	0	0			REV__ENST00000496968.5_1_7:143997625-144008999:-|nuORF	REV__ENST00000496968.5_1_7:143997625-144008999:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	489.270435	976.526318	-0.16388	-8.0183E-05	-0.90544	-0.000443	-1.0693	-0.00052319	489.2686735152483	79.15	0.50816	79.15	78.859	79.367	0	0.033986	0.00030137	NaN	13.906	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1456800	+		1351	25066	848	859							0.037115784770321625
AELSVMKSL	9	Unmodified	_AELSVMKSL_					0	0	0			REV__ENST00000496968.5_1_7:143997625-144008999:-|nuORF	REV__ENST00000496968.5_1_7:143997625-144008999:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	489.270435	976.526318	-0.52314	-0.00025595	-1.5506	-0.00075867	-2.0737	-0.0010146	489.26845760334993	78.339	0.50864	79.082	78.777	79.286	0.74382	-0.033986	-0.00032996	NaN	13.906	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1330300	+		1352	25066	848	859							0.037115784770321625
AELTEEINKW	10	Unmodified	_AELTEEINKW_					0	0	0		nc|ENSG00000072571|O75330-4|HMMR;nc|ENSG00000072571|O75330-2|HMMR;nc|ENSG00000072571|O75330|HMMR;ENSG00000072571|ENST00000393915|HMMR	nc|ENSG00000072571|O75330-4|HMMR	nc|ENSG00000072571|O75330-4|HMMR	MULTI-MSMS	A375_MHC_IP_R1	1	617.211669921875	2	616.81151	1231.60847	-0.12166	-7.5039E-05	0.75599	0.0004663	0.63433	0.00039126	616.8118588678651	71.993	0.40425	71.993	71.765	72.169	0					11	7	2	0	0	0	0.10407	1	26210	26210		71.708	33.093	1	2812900			1353	1540	849	860	1340	1340					0.0019277208964467718
AELTEEINKW	10	Unmodified	_AELTEEINKW_					0	0	0		nc|ENSG00000072571|O75330-4|HMMR;nc|ENSG00000072571|O75330-2|HMMR;nc|ENSG00000072571|O75330|HMMR;ENSG00000072571|ENST00000393915|HMMR	nc|ENSG00000072571|O75330-4|HMMR	nc|ENSG00000072571|O75330-4|HMMR	MULTI-MSMS	A375_MHC_IP_R2	2	617.2113037109375	2	616.81151	1231.60847	-0.86591	-0.00053411	1.1912	0.00073474	0.32528	0.00020063	616.8122704988559	71.302	0.35554	72.036	71.806	72.162	0.73421					9	6	2	0	0	0	0.11261	1	27077	27077		78.06	46.792	1	2632600			1354	1540	849	860	1341	1341					0.0019277208964467718
AELTGDHQL	9	Unmodified	_AELTGDHQL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-SECPEP	A375_MHC_IP_R1	1	492.64288330078125	2	492.243264	982.471974	-0.56396	-0.00027761	0.091127	4.4857E-05	-0.47283	-0.00023275	492.2432233363361	32.535	0.7075	32.535	32.231	32.938	0					25	13	3	0	0	0	0.20645	1	10527	10527		56.177	20.05	1	5569500			1355	5456	850	861	1342	1342					-0.019962973501833403
AELTKVFEI	9	Unmodified	_AELTKVFEI_					0	0	0		ENST00000601731.1_1_19:39819119-39826633:-|nuORF;ENSG00000197045|ENST00000358056|GMFB;ENSG00000130755|ENST00000597595|GMFG	ENST00000601731.1_1_19:39819119-39826633:-|nuORF	ENST00000601731.1_1_19:39819119-39826633:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	525.706787109375	2	525.297507	1048.58046	-0.38196	-0.00020064	-0.19132	-0.0001005	-0.57328	-0.00030114	525.7983731120646	90.946	0.40477	91.681	91.413	91.818	0.73451					13	7	3	0	0	0	0.27064	1	34567	34567		32.786	3.7041	1	1048800			1356	4278	851	862	1343	1343					0.05811493900228015
AELTPHQTF	9	Unmodified	_AELTPHQTF_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-SECPEP	A375_MHC_IP_R1	1	522.7081909179688	2	522.261456	1042.50836	-0.48289	-0.0002522	-0.18477	-9.65E-05	-0.66766	-0.0003487	522.2613128570083	40.787	1.2168	40.787	40.509	41.725	0					34	23	2	0	0	0	0.044425	1	13982	13982		96.936	55.096	1	63306000			1357	3557	852	863	1344	1344					-0.011194204534831442
AELTPHQTF	9	Unmodified	_AELTPHQTF_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-SECPEP	A375_MHC_IP_R2	2	522.6609497070312	2	522.261456	1042.50836	-0.62758	-0.00032776	-0.98638	-0.00051515	-1.614	-0.00084291	522.2612095629999	40.002	1.1679	40.777	40.422	41.59	0.77451					77	22	7	0	0	0	0.011143	1	14787	14787		136.39	68.311	1	64823000			1358	3557	852	863	1345	1345					-0.011194204534831442
AELVAQWNY	9	Unmodified	_AELVAQWNY_					0	0	0		ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	MULTI-MSMS	A375_MHC_IP_R1	1	547.2626953125	2	547.269281	1092.52401	-0.59017	-0.00032298	1.6918	0.00092589	1.1017	0.00060291	547.2705091050761	95.781	0.65581	95.781	95.312	95.968	0					16	12	2	0	0	0	0.38603	1	35125	35125		25.399	11.891	1	1029400			1359	1067	853	864	1346	1346					-0.018551339364194064
AELVDDKGNF	10	Unmodified	_AELVDDKGNF_					0	0	0		tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1;tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1	tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	554.1954956054688	2	554.269478	1106.5244	-0.414	-0.00022947	-0.97153	-0.00053849	-1.3855	-0.00076796	554.2687266832772	44.19	0.61363	44.19	43.909	44.523	0					17	11	2	0	0	0	0.66308	1	15335	15335		16.149	1.3108	1	1880700			1360	29862	854	865	1347	1347					-0.024597590072289677
AELVDDKGNF	10	Unmodified	_AELVDDKGNF_					0	0	0		tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1;tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1	tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	554.269478	1106.5244	-0.63043	-0.00034943	0.4562	0.00025286	-0.17424	-9.6575E-05	554.269613024389	43.361	0.45671	44.133	43.926	44.383	0.7724	-0.028565	0.0013258	NaN	16.149	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1736300			1361	29862	854	865							-0.024597590072289677
AELVNLRERLA	11	Unmodified	_AELVNLRERLA_					0	0	0			REV__ENSG00000269720|ENST00000636079|CCDC194	REV__ENSG00000269720|ENST00000636079|CCDC194	MULTI-MSMS	A375_MHC_IP_R1	1	428.9858093261719	3	428.585854	1282.73573	-0.16456	-7.0528E-05	0.52927	0.00022684	0.36472	0.00015631	428.58585734563184	64.359	0.40514	64.359	64.09	64.495	0					16	7	3	0	0	0	0.73354	1	23297	23297		5.5233	1.9306	1	1626700	+		1362	22939	855	866	1348	1348					0.10567537754513978
AELVRIKEL	9	Unmodified	_AELVRIKEL_					0	0	0			REV__nc|ENSG00000138180|Q53EZ4-2|CEP55	REV__nc|ENSG00000138180|Q53EZ4-2|CEP55	MULTI-SECPEP	A375_MHC_IP_R1	1	536.2315063476562	2	535.832049	1069.64954	-0.7374	-0.00039512	0.0077388	4.1467E-06	-0.72966	-0.00039097	535.832055560196	59.168	0.51004	59.168	58.887	59.397	0					15	9	2	0	0	0	0.67539	1	21303	21303		16.149	3.1066	1	2092300	+		1363	19073	856	867	1349	1349					0.11750577919792704
AELVRIKEL	9	Unmodified	_AELVRIKEL_					0	0	0			REV__nc|ENSG00000138180|Q53EZ4-2|CEP55	REV__nc|ENSG00000138180|Q53EZ4-2|CEP55	MULTI-SECPEP	A375_MHC_IP_R2	2	536.2315063476562	2	535.832049	1069.64954	-1.1068	-0.00059306	-0.4492	-0.0002407	-1.556	-0.00083375	535.83185155866	58.005	0.40207	58.754	58.578	58.98	0.74894					12	7	2	0	0	0	0.63622	1	21970	21970		14.405	0	1	2036400	+		1364	19073	856	867	1350	1350					0.11750577919792704
AELVRYLEAM	10	Unmodified	_AELVRYLEAM_					0	0	0			REV__ENST00000535158.5_1_12:31227017-31242187:+|nuORF	REV__ENST00000535158.5_1_12:31227017-31242187:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	398.92144775390625	3	398.877758	1193.61144	-0.41659	-0.00016617	0.078939	3.1487E-05	-0.33765	-0.00013468	398.87779695621003	22.659	0.3063	23.289	23.062	23.368	0.63014					9	5	2	0	0	0	0.70496	1	7157	7157		5.7834	0	1	795400	+		1365	16237	857	868	1351	1351					0.022383239428108936
AELWRRLF	8	Unmodified	_AELWRRLF_					0	0	0			REV__ENST00000219070.8_1_16:55513101-55513161:+|nuORF	REV__ENST00000219070.8_1_16:55513101-55513161:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	545.1355590820312	2	545.811451	1089.60835	-1.0618	-0.00057956	2.3022	0.0012566	1.2404	0.000677	545.8130269200451	37.984	0.46227	38.758	38.636	39.098	0.77451					10	8	2	0	0	0	0.972	1	13895	13895		13.508	9.9114	1	882100	+		1366	23043	858	869	1352	1352					0.06712861670962411
AELYATGIVL	10	Unmodified	_AELYATGIVL_					0	0	0			REV__ENSG00000075568|ENST00000186436|TMEM131	REV__ENSG00000075568|ENST00000186436|TMEM131	MULTI-SECPEP	A375_MHC_IP_R1	1	524.712890625	2	525.297507	1048.58046	-0.47542	-0.00024974	-1.8917	-0.0009937	-2.3671	-0.0012434	525.2967861768084	91.733	0.50418	91.733	91.452	91.956	0					14	9	3	0	0	0	0.8125	1	33688	33688		24.021	0	1	1481300	+		1367	16659	859	870	1353	1353					0.05811493900228015
AELYINEHDY	10	Unmodified	_AELYINEHDY_					0	0	0		ENST00000520294.5_1_8:109476316-109498824:+|nuORF;ENSG00000104412|ENST00000220853|EMC2	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	633.7462158203125	2	633.785492	1265.55643	-0.87585	-0.0005551	0.47041	0.00029814	-0.40544	-0.00025696	633.7854059556709	55.514	0.45546	56.264	55.984	56.439	0.75075					19	8	4	0	0	0	0.54012	1	20928	20928		45.74	34.245	1	3079100			1368	2508	860	871	1354	1354					-0.06572391324084492
AELYINEHDY	10	Unmodified	_AELYINEHDY_					0	0	0		ENST00000520294.5_1_8:109476316-109498824:+|nuORF;ENSG00000104412|ENST00000220853|EMC2	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	633.785492	1265.55643	-0.5561	-0.00035245	0.16587	0.00010512	-0.39024	-0.00024733	633.7856732576994	56.134	0.55719	56.134	55.79	56.347	0	-0.065233	-0.00017109	NaN	45.74	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3052700			1369	2508	860	871							-0.06572391324084492
AELYQNEY	8	Unmodified	_AELYQNEY_					0	0	0			REV__CCDC178|p.H410Y|1|0.84|ENSG00000166960|chr18:33267246-33267246|G/A|missense_variant	REV__CCDC178|p.H410Y|1|0.84|ENSG00000166960|chr18:33267246-33267246|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	515.62841796875	2	515.229822	1028.44509	-0.41606	-0.00021437	-1.5221	-0.00078422	-1.9381	-0.00099859	515.228718369192	62.737	0.51218	62.737	62.454	62.966	0					19	9	3	0	0	0	0.62444	1	22672	22672		43.858	9.7559	1	2750600	+		1370	15593	861	872	1355	1355					-0.0679940596137385
AEMAILVYG	9	Unmodified	_AEMAILVYG_					0	0	0			REV__nc|ENSG00000132294|Q14156-3|EFR3A	REV__nc|ENSG00000132294|Q14156-3|EFR3A	MULTI-MSMS	A375_MHC_IP_R2	2	966.2584838867188	1	966.496481	965.489204	0.10591	0.00010236	-2.8268	-0.0027321	-2.7209	-0.0026297	966.493713858956	137.19	0.15411	137.27	137.2	137.35	0.083969					4	2	2	0	0	0	0.64808	1	53868	53868		11.64	1.5664	1	1335500	+		1371	18644	862	873	1356	1356					0.005079069312500906
AEMAILVYG	9	Unmodified	_AEMAILVYG_					0	0	0			REV__nc|ENSG00000132294|Q14156-3|EFR3A	REV__nc|ENSG00000132294|Q14156-3|EFR3A	MULTI-MATCH	A375_MHC_IP_R1	1		1	966.496481	965.489204	-0.20848	-0.00020149	-2.5604	-0.0024746	-2.7689	-0.0026761	966.4946364076367	137.31	0.20726	137.31	137.18	137.39	0	0.016282	0.00011315	NaN	11.64	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	685270	+		1372	18644	862	873							0.005079069312500906
AEMAILVYG	9	Unmodified	_AEMAILVYG_					0	0	0			REV__nc|ENSG00000132294|Q14156-3|EFR3A	REV__nc|ENSG00000132294|Q14156-3|EFR3A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	966.496481	965.489204	0.10591	0.00010236	-2.8268	-0.0027321	-2.7209	-0.0026297	966.493713858956	137.19	0.15411	137.27	137.2	137.35	0.083969	-0.016282	-0.00014432	NaN	11.64	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1335500	+		1373	18644	862	873							0.005079069312500906
AEMDPVNSY	9	Oxidation (M)	_AEM(Oxidation (M))DPVNSY_		AEM(1)DPVNSY		AEM(46)DPVNSY	0	0	1		ENSG00000198597|ENST00000355537|ZNF536;ZNF536|p.A523V|1|0.08|ENSG00000198597|chr19:30445130-30445130|C/T|missense_variant	ENSG00000198597|ENST00000355537|ZNF536	ENSG00000198597|ENST00000355537|ZNF536	MULTI-MSMS	A375_MHC_IP_R1	1	521.6129760742188	2	521.213314	1040.41208	-0.80274	-0.0004184	-0.037618	-1.9607E-05	-0.84036	-0.00043801	521.2133255059042	36.63	0.45616	36.63	36.389	36.845	0					15	8	2	0	0	0	0.12771	1	12305	12305		45.7	29.852	1	2679600			1374	9288	863	874	1357	1357		423			-0.1065135607573211
AEMDPVNSY	9	Oxidation (M)	_AEM(Oxidation (M))DPVNSY_		AEM(1)DPVNSY		AEM(93)DPVNSY	0	0	1		ENSG00000198597|ENST00000355537|ZNF536;ZNF536|p.A523V|1|0.08|ENSG00000198597|chr19:30445130-30445130|C/T|missense_variant	ENSG00000198597|ENST00000355537|ZNF536	ENSG00000198597|ENST00000355537|ZNF536	MULTI-MSMS	A375_MHC_IP_R2	2	521.6128540039062	2	521.213314	1040.41208	-0.75816	-0.00039516	0.038702	2.0172E-05	-0.71946	-0.00037499	521.21335572178	36.038	0.45926	36.802	36.486	36.946	0.76338					18	8	3	0	0	0	0.012843	1	13077	13077		92.653	72.2	1	4299000			1375	9288	863	874	1358	1358		423			-0.1065135607573211
AEMDPVNSY	9	Unmodified	_AEMDPVNSY_					0	0	0		ENSG00000198597|ENST00000355537|ZNF536;ZNF536|p.A523V|1|0.08|ENSG00000198597|chr19:30445130-30445130|C/T|missense_variant	ENSG00000198597|ENST00000355537|ZNF536	ENSG00000198597|ENST00000355537|ZNF536	MULTI-SECPEP	A375_MHC_IP_R2	2	513.6227416992188	2	513.215857	1024.41716	-1.3458	-0.00069069	0.00021032	1.0794E-07	-1.3456	-0.00069058	513.2158250533043	53.3	0.51036	54.051	53.739	54.249	0.75105					13	9	2	0	0	0	0.31606	1	20054	20054		47.749	39.155	1	1407500			1376	9288	863	875	1359	1359					-0.0940705221311191
AEMEERFYRY	10	Unmodified	_AEMEERFYRY_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;ENST00000536999.1_1_12:6705170-6707214:-|nuORF	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-SECPEP	A375_MHC_IP_R1	1	465.692138671875	3	465.211688	1392.61324	-0.030546	-1.421E-05	-0.41384	-0.00019252	-0.44438	-0.00020673	465.21138597674786	43.12	0.35805	43.12	42.993	43.351	0					9	6	2	0	0	0	0.93711	1	14960	14960		9.2438	0.49199	1	1456500			1377	3005	864	876	1360	1360					-0.06736667039217537
AEMEHLLERSW	11	Unmodified	_AEMEHLLERSW_					0	0	0		nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1;ENST00000529207.5_1_11:64899759-64900720:-|nuORF;ENST00000449943.5_1_11:64900197-64901072:-|nuORF	nc|ENSG00000162298|Q86TM6-2|SYVN1	nc|ENSG00000162298|Q86TM6-2|SYVN1	MULTI-MSMS	A375_MHC_IP_R2	2	467.59698486328125	3	467.559088	1399.65543	-0.53772	-0.00025142	-0.29818	-0.00013942	-0.83591	-0.00039084	467.5588813636348	69.401	0.35326	70.135	69.931	70.284	0.7342					10	6	2	0	0	0	0.64767	1	26319	26319		19.615	6.7594	1	966050			1378	6516	865	877	1361	1361					-0.028406916308313157
AEMELQAKL	9	Unmodified	_AEMELQAKL_					0	0	0		nc|ENSG00000177426|Q15583-4|TGIF1;ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	MULTI-SECPEP	A375_MHC_IP_R1	1	517.173095703125	2	516.773342	1031.53213	-0.50642	-0.0002617	-0.068941	-3.5627E-05	-0.57536	-0.00029733	516.773353986443	57.413	0.45913	57.413	57.109	57.568	0					15	8	2	0	0	0	0.54812	1	20622	20622		19.362	7.1213	1	2381800			1379	8082	866	878	1362	1362					0.017626769886874172
AEMELQAKL	9	Unmodified	_AEMELQAKL_					0	0	0		nc|ENSG00000177426|Q15583-4|TGIF1;ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	MULTI-SECPEP	A375_MHC_IP_R2	2	517.172607421875	2	516.773342	1031.53213	-1.141	-0.00058964	0.11057	5.7141E-05	-1.0304	-0.00053249	516.773432733363	56.531	0.56134	57.281	57.051	57.612	0.75015					17	10	2	0	0	0	0.036758	1	21393	21393		79.596	25.764	1	2737100			1380	8082	866	878	1363	1363					0.017626769886874172
AEMEVKRESY	10	Unmodified	_AEMEVKRESY_					0	0	0		ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	MULTI-SECPEP	A375_MHC_IP_R2	2	414.9322814941406	3	414.532539	1240.57579	-0.31737	-0.00013156	-0.17744	-7.3554E-05	-0.49481	-0.00020511	414.5324532436428	20.116	0.45773	20.726	20.449	20.907	0.61029					14	8	2	0	0	0	0.72578	1	6243	6243		35.08	23.562	1	3675700			1381	5471	867	879	1364	1364					-0.03487758304822819
AEMFCLKNI	9	Unmodified	_AEMFCLKNI_					0	0	0			REV__ENSG00000198954|ENST00000361983|KIFBP	REV__ENSG00000198954|ENST00000361983|KIFBP	MULTI-SECPEP	A375_MHC_IP_R1	1	534.143310546875	2	534.764463	1067.51437	-0.58882	-0.00031488	-0.8339	-0.00044594	-1.4227	-0.00076082	534.763325568025	44.117	0.81664	44.117	43.706	44.523	0					20	13	2	0	0	0	0.50702	1	15417	15417		13.906	7.7003	1	2176500	+		1382	22457	868	880	1365	1365					-0.016683615378042305
AEMLPGVLQQF	11	Oxidation (M)	_AEM(Oxidation (M))LPGVLQQF_		AEM(1)LPGVLQQF		AEM(87)LPGVLQQF	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-SECPEP	A375_MHC_IP_R1	1	625.1180419921875	2	624.818281	1247.62201	-0.26641	-0.00016646	-0.34339	-0.00021456	-0.6098	-0.00038101	624.8182277636922	116.98	0.45651	116.98	116.7	117.16	0					15	8	2	0	0	0	0.034267	1	42919	42919		87.258	57.418	1	6074600			1383	2511	869	881	1366	1366		112			0.00810306597259114
AEMLPGVLQQF	11	Oxidation (M)	_AEM(Oxidation (M))LPGVLQQF_		AEM(1)LPGVLQQF		AEM(81)LPGVLQQF	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-SECPEP	A375_MHC_IP_R1	1	625.2186889648438	2	624.818281	1247.62201	-0.2363	-0.00014764	0.15491	9.6794E-05	-0.08138	-5.0848E-05	624.818559742987	116.53	0.35655	116.53	116.34	116.7	0					17	6	4	0	0	0	0.039874	1	42757	42757		80.676	50.835	1	6306000			1384	2511	869	881	1367	1367		112			0.00810306597259114
AEMLPGVLQQF	11	Oxidation (M)	_AEM(Oxidation (M))LPGVLQQF_		AEM(1)LPGVLQQF		AEM(130)LPGVLQQF	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	A375_MHC_IP_R2	2	625.2188720703125	2	624.818281	1247.62201	-0.60958	-0.00038088	-1.0999	-0.00068724	-1.7095	-0.0010681	624.8173978060448	116.28	0.91692	116.94	116.21	117.12	0.65961					28	17	3	0	0	0	0.00028838	2	43651	43651;43768		125.04	95.197	1	15540000			1385	2511	869	881	1368;1369	1368		112			0.00810306597259114
AEMLPGVLQQF	11	Unmodified	_AEMLPGVLQQF_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-SECPEP	A375_MHC_IP_R2	2	617.2205200195312	2	616.820824	1231.62709	-0.66899	-0.00041265	-0.29578	-0.00018244	-0.96477	-0.00059509	616.8207022239021	127.37	0.30443	127.64	127.51	127.82	0.26593					14	5	4	0	0	0	0.1966	1	49979	49979		63.227	43.866	1	26395000			1386	2511	869	882	1370	1370					0.020546104598906823
AEMLPPNF	8	Unmodified	_AEMLPPNF_					0	0	0		ENST00000602905.1_1_19:49651881-49653392:+|nuORF;nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3	ENST00000602905.1_1_19:49651881-49653392:+|nuORF	ENST00000602905.1_1_19:49651881-49653392:+|nuORF	MSMS	A375_MHC_IP_R1	1	459.65606689453125	2	459.723121	917.431689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.281	1	36.281	35.781	36.781	0								0	0	0	0.16876	1	12133	12133		13.508	0.97634	1				1387	8078	870	883	1371	1371					-0.03032935274313786
AEMNGKLI	8	Unmodified	_AEMNGKLI_					0	0	0		ENSG00000116679|ENST00000367498|IVNS1ABP;ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENST00000491112.1_1_1:185269520-185270317:-|nuORF;ENST00000494880.5_1_1:185268818-185270317:-|nuORF	ENSG00000116679|ENST00000367498|IVNS1ABP	ENSG00000116679|ENST00000367498|IVNS1ABP	MULTI-MSMS	A375_MHC_IP_R2	2	438.63616943359375	2	438.236396	874.458238	-0.59709	-0.00026166	0.014837	6.5023E-06	-0.58225	-0.00025516	438.236403538441	38.756	0.45933	39.53	39.3	39.76	0.77451					12	8	2	0	0	0	0.73111	1	14316	14316		25.399	4.9457	1	5184000			1388	3416	871	884	1372	1372					0.015987536170200656
AEMNGKLI	8	Unmodified	_AEMNGKLI_					0	0	0		ENSG00000116679|ENST00000367498|IVNS1ABP;ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENST00000491112.1_1_1:185269520-185270317:-|nuORF;ENST00000494880.5_1_1:185268818-185270317:-|nuORF	ENSG00000116679|ENST00000367498|IVNS1ABP	ENSG00000116679|ENST00000367498|IVNS1ABP	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	438.236396	874.458238	-0.36311	-0.00015913	0.27374	0.00011996	-0.089368	-3.9164E-05	438.23641072547684	39.618	0.40381	39.618	39.441	39.845	0	0.043564	0.00014349	NaN	25.399	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3232700			1389	3416	871	884							0.015987536170200656
AEMPDQFEI	9	Unmodified	_AEMPDQFEI_					0	0	0		nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3	nc|ENSG00000105289|O95049-5|TJP3	nc|ENSG00000105289|O95049-5|TJP3	MSMS	A375_MHC_IP_R2	2	540.1788330078125	2	540.239332	1078.46411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.104	1	41.878	41.378	42.378	0.77451								0	0	0	0.15486	1	15241	15241		11.64	2.8949	1				1390	2586	872	885	1373	1373					-0.07198192661962821
AEMPFMHSL	9	Unmodified	_AEMPFMHSL_					0	0	0		ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	532.4335327148438	2	531.740988	1061.46742	-0.72401	-0.00038498	-1.3822	-0.00073495	-2.1062	-0.0011199	532.2414055243961	87.115	0.45605	87.115	86.781	87.237	0					13	8	2	0	0	0	0.58271	1	31923	31923		10.074	3.3508	1	1009900			1391	192	873	886	1374	1374					-0.060852210889606795
AEMQWKRDY	9	Oxidation (M)	_AEM(Oxidation (M))QWKRDY_		AEM(1)QWKRDY		AEM(48)QWKRDY	0	0	1		nc|ENSG00000140990|O96000-2|NDUFB10;ENSG00000140990|ENST00000268668|NDUFB10	nc|ENSG00000140990|O96000-2|NDUFB10	nc|ENSG00000140990|O96000-2|NDUFB10	MULTI-MSMS	A375_MHC_IP_R1	1	415.25714111328125	3	414.857245	1241.54991	0.088748	3.6818E-05	-0.46807	-0.00019418	-0.37932	-0.00015736	414.857118529255	23.595	1.4227	23.595	23.125	24.547	0					51	27	3	0	0	0	0.11638	1	6646	6646		47.732	34.213	1	19000000			1392	5203	874	887	1375	1375		277			-0.061206077564520456
AEMQWKRDY	9	Oxidation (M)	_AEM(Oxidation (M))QWKRDY_		AEM(1)QWKRDY		AEM(50)QWKRDY	0	0	1		nc|ENSG00000140990|O96000-2|NDUFB10;ENSG00000140990|ENST00000268668|NDUFB10	nc|ENSG00000140990|O96000-2|NDUFB10	nc|ENSG00000140990|O96000-2|NDUFB10	MULTI-MSMS	A375_MHC_IP_R1	1	622.1817016601562	2	621.78223	1241.54991	-0.69993	-0.0004352	0.26731	0.00016621	-0.43262	-0.00026899	621.7822714586611	23.937	0.55869	23.937	23.635	24.194	0					16	10	2	0	0	0	0.10518	1	6761	6761		49.742	32.629	1	2578000			1393	5203	874	887	1376	1376		277			-0.061206077564520456
AEMQWKRDY	9	Unmodified	_AEMQWKRDY_					0	0	0		nc|ENSG00000140990|O96000-2|NDUFB10;ENSG00000140990|ENST00000268668|NDUFB10	nc|ENSG00000140990|O96000-2|NDUFB10	nc|ENSG00000140990|O96000-2|NDUFB10	MULTI-MSMS	A375_MHC_IP_R1	1	614.1848754882812	2	613.784773	1225.55499	-0.34001	-0.0002087	0.40337	0.00024759	0.063361	3.889E-05	613.7847105030523	31.389	0.35426	31.389	31.262	31.616	0					11	6	2	0	0	0	0.024772	1	10076	10076		79.427	50.345	1	3039300			1394	5203	874	888	1377	1377					-0.048763038938432146
AEMQWKRDY	9	Unmodified	_AEMQWKRDY_					0	0	0		nc|ENSG00000140990|O96000-2|NDUFB10;ENSG00000140990|ENST00000268668|NDUFB10	nc|ENSG00000140990|O96000-2|NDUFB10	nc|ENSG00000140990|O96000-2|NDUFB10	MULTI-SECPEP	A375_MHC_IP_R1	1	409.925537109375	3	409.525607	1225.55499	-0.057793	-2.3668E-05	0.19284	7.8971E-05	0.13504	5.5303E-05	409.5256833389577	31.409	0.45611	31.409	31.211	31.667	0					16	8	2	0	0	0	0.14438	1	10054	10054		59.052	50.608	1	10841000			1395	5203	874	888	1378	1378					-0.048763038938432146
AEMQWKRDY	9	Unmodified	_AEMQWKRDY_					0	0	0		nc|ENSG00000140990|O96000-2|NDUFB10;ENSG00000140990|ENST00000268668|NDUFB10	nc|ENSG00000140990|O96000-2|NDUFB10	nc|ENSG00000140990|O96000-2|NDUFB10	MULTI-MSMS	A375_MHC_IP_R2	2	614.1840209960938	2	613.784773	1225.55499	-0.59232	-0.00036356	-0.16152	-9.9136E-05	-0.75383	-0.00046269	613.7848187873618	30.697	0.45319	31.416	31.216	31.669	0.71857					15	8	3	0	0	0	0.0111	1	10815	10815		94.909	65.827	1	3578300			1396	5203	874	888	1379	1379					-0.048763038938432146
AEMQWKRDY	9	Unmodified	_AEMQWKRDY_					0	0	0		nc|ENSG00000140990|O96000-2|NDUFB10;ENSG00000140990|ENST00000268668|NDUFB10	nc|ENSG00000140990|O96000-2|NDUFB10	nc|ENSG00000140990|O96000-2|NDUFB10	MULTI-SECPEP	A375_MHC_IP_R2	2	409.9255676269531	3	409.525607	1225.55499	-0.0071288	-2.9194E-06	-0.34325	-0.00014057	-0.35038	-0.00014349	409.5254602150127	30.674	0.75832	31.392	31.165	31.923	0.71857					29	14	3	0	0	0	0.44554	1	10778	10778		34.222	20.703	1	18467000			1397	5203	874	888	1380	1380					-0.048763038938432146
AEMSRRLVWDW	11	Unmodified	_AEMSRRLVWDW_					0	0	0			REV__ENST00000478824.1_1_17:46783758-46784010:+|nuORF	REV__ENST00000478824.1_1_17:46783758-46784010:+|nuORF	MSMS	A375_MHC_IP_R2	2	483.6337890625	3	483.574961	1447.70305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.658	1	44.427	43.927	44.927	0.7691								0	0	0	0.16309	1	16271	16271		2.6312	0.19645	1		+		1398	25223	875	889	1381	1381					-0.002889926399802789
AENAGSYSL	9	Unmodified	_AENAGSYSL_					0	0	0		ENST00000544060.1_1_12:104359692-104373925:+|nuORF;ENSG00000139372|ENST00000392872|TDG	ENST00000544060.1_1_12:104359692-104373925:+|nuORF	ENST00000544060.1_1_12:104359692-104373925:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	456.60882568359375	2	456.208889	910.403226	-0.13331	-6.0816E-05	0.091929	4.1939E-05	-0.041379	-1.8878E-05	456.2088228812878	45.966	0.70881	45.966	45.636	46.345	0					21	13	2	0	0	0	0.018261	1	16076	16076		85.642	43.547	1	4233500			1399	5076	876	890	1382	1382					-0.05555961649906749
AENAGSYSL	9	Unmodified	_AENAGSYSL_					0	0	0		ENST00000544060.1_1_12:104359692-104373925:+|nuORF;ENSG00000139372|ENST00000392872|TDG	ENST00000544060.1_1_12:104359692-104373925:+|nuORF	ENST00000544060.1_1_12:104359692-104373925:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	456.60882568359375	2	456.208889	910.403226	-0.3146	-0.00014352	-0.072235	-3.2954E-05	-0.38683	-0.00017648	456.2088203842919	45.207	0.66114	45.972	45.642	46.303	0.76519					22	12	2	0	0	0	0.02114	1	16887	16887		82.529	27.756	1	4179500			1400	5076	876	890	1383	1383					-0.05555961649906749
AENAGSYSL	9	Unmodified	_AENAGSYSL_					0	0	0		ENST00000544060.1_1_12:104359692-104373925:+|nuORF;ENSG00000139372|ENST00000392872|TDG	ENST00000544060.1_1_12:104359692-104373925:+|nuORF	ENST00000544060.1_1_12:104359692-104373925:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	911.8093872070312	1	911.410502	910.403226	-0.4425	-0.0004033	-0.077786	-7.0895E-05	-0.52029	-0.0004742	911.4103753392316	45.234	0.60902	45.999	45.694	46.303	0.76519					21	11	3	0	0	0	0.012447	1	17008	17008		93.166	45.417	1	4392900			1401	5076	876	890	1384	1384					-0.05555961649906749
AENAGSYSL	9	Unmodified	_AENAGSYSL_					0	0	0		ENST00000544060.1_1_12:104359692-104373925:+|nuORF;ENSG00000139372|ENST00000392872|TDG	ENST00000544060.1_1_12:104359692-104373925:+|nuORF	ENST00000544060.1_1_12:104359692-104373925:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	911.410502	910.403226	-0.014939	-1.3616E-05	-0.32426	-0.00029553	-0.3392	-0.00030915	911.4101715412712	45.937	0.55832	45.937	45.687	46.245	0	-0.030949	-0.0001067	NaN	93.166	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5152200			1402	5076	876	890							-0.05555961649906749
AENAPLHTL	9	Unmodified	_AENAPLHTL_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	483.6560974121094	2	483.256174	964.497795	0.0098212	4.7462E-06	1.1733	0.00056702	1.1832	0.00057177	483.25710305725886	38.904	1.1685	38.904	38.475	39.643	0					43	22	3	0	0	0	0.011236	1	13251	13251		106.94	53.107	1	6176600			1403	1791	877	891	1385	1385					0.01412596892100737
AENAPLHTL	9	Unmodified	_AENAPLHTL_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6559143066406	2	483.256174	964.497795	-0.83418	-0.00040312	0.28583	0.00013813	-0.54835	-0.00026499	483.25624729255054	38.043	0.5641	38.817	38.585	39.149	0.77451					15	10	2	0	0	0	0.013591	1	13976	13976		106.94	53.107	1	5028800			1404	1791	877	891	1386	1386					0.01412596892100737
AENCPYMHGDF	11	Unmodified	_AENCPYMHGDF_					0	0	0		ENSG00000130749|ENST00000253048|ZC3H4	ENSG00000130749|ENST00000253048|ZC3H4	ENSG00000130749|ENST00000253048|ZC3H4	MSMS	A375_MHC_IP_R2	2	642.2822875976562	2	642.244623	1282.47469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.22	1	134.36	133.86	134.86	0.13901								0	0	0	0.16302	1	52800	52800		2.9952	1.3426	1				1405	4277	878	892	1387	1387					-0.15524533279176467
AENELNQSY	9	Unmodified	_AENELNQSY_					0	0	0		ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	MULTI-MSMS	A375_MHC_IP_R1	1	534.6351928710938	2	534.235635	1066.45672	-0.96415	-0.00051508	0.284	0.00015172	-0.68015	-0.00036336	534.2358511848015	36.618	0.65678	36.618	36.339	36.996	0					25	12	3	0	0	0	0.032333	1	12254	12254		72.968	50.232	1	5540600			1406	4524	879	893	1388	1388					-0.07385208938035248
AENELNQSY	9	Unmodified	_AENELNQSY_					0	0	0		ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	MULTI-SECPEP	A375_MHC_IP_R2	2	534.6355590820312	2	534.235635	1066.45672	-0.9223	-0.00049273	0.06019	3.2155E-05	-0.86211	-0.00046057	534.235668106174	36.005	0.71416	36.769	36.283	36.997	0.76338					26	13	3	0	0	0	0.090157	1	13055	13055		76.825	38.21	1	6892200			1407	4524	879	893	1389	1389					-0.07385208938035248
AENEYQTAI	9	Unmodified	_AENEYQTAI_					0	0	0		ENSG00000116489|ENST00000263168|CAPZA1;ENST00000565906.2_1_15:89532752-89533049:-|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2	ENSG00000116489|ENST00000263168|CAPZA1	ENSG00000116489|ENST00000263168|CAPZA1	MULTI-SECPEP	A375_MHC_IP_R2	2	520.1399536132812	2	519.740554	1037.46655	-0.48135	-0.00025018	-0.26827	-0.00013943	-0.74962	-0.00038961	519.7403963909541	46.825	1.0684	47.586	47.258	48.326	0.76128					38	20	3	0	0	0	0.10362	1	17508	17508		63.961	9.187	1	10317000			1408	3400	880	894	1390	1390					-0.050680209326628756
AENFAEHVL	9	Unmodified	_AENFAEHVL_					0	0	0		ENST00000460579.5_1_2:219527197-219528106:+|nuORF;ENSG00000074582|ENST00000359273|BCS1L	ENST00000460579.5_1_2:219527197-219528106:+|nuORF	ENST00000460579.5_1_2:219527197-219528106:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	515.2390747070312	2	515.253631	1028.49271	-0.56128	-0.0002892	0.42203	0.00021745	-0.13925	-7.1749E-05	515.2536756950738	59.053	0.45924	59.053	58.836	59.295	0					12	8	2	0	0	0	0.60101	1	21266	21266		14.838	4.6549	1	721600			1409	1585	881	895	1391	1391					-0.020397069705268223
AENFEDYV	8	Unmodified	_AENFEDYV_					0	0	0			REV__tr|U7T016|U7T016_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00853PE=4SV=1	REV__tr|U7T016|U7T016_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00853PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	494.1065673828125	2	493.708722	985.402892	-0.34828	-0.00017195	-2.8367	-0.0014005	-3.185	-0.0015725	493.7075407062481	43.801	0.661	43.801	43.4	44.061	0					16	12	2	0	0	0	0.77488	1	15261	15261		13.508	4.1604	1	3122000	+		1410	28664	882	896	1392	1392					-0.09039381369757393
AENGFLPIHL	10	Unmodified	_AENGFLPIHL_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	A375_MHC_IP_R1	1	556.200927734375	2	555.800749	1109.58694	-0.30694	-0.0001706	0.33737	0.00018751	0.030428	1.6912E-05	555.8005896532301	107.9	0.5582	107.9	107.6	108.15	0					23	10	3	0	0	0	0.12141	1	39583	39583		78.728	55.992	1	2739900			1411	6659	883	897	1393	1393					0.0365343185162601
AENGFLPIHL	10	Unmodified	_AENGFLPIHL_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MATCH	A375_MHC_IP_R2	2		2	555.800749	1109.58694	-0.85092	-0.00047294	0.017808	9.8977E-06	-0.83312	-0.00046305	555.800803071284	106.95	0.5578	107.71	107.44	108	0.75977	-0.093286	-0.00012652	NaN	78.728	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1718000			1412	6659	883	897							0.0365343185162601
AENGLAASQQY	11	Unmodified	_AENGLAASQQY_					0	0	0			REV__ENSG00000081791|ENST00000432126|DELE1	REV__ENSG00000081791|ENST00000432126|DELE1	MULTI-MSMS	A375_MHC_IP_R1	1	576.6710815429688	2	576.27001	1150.52547	-0.12343	-7.1131E-05	1.8507	0.0010665	1.7273	0.00099538	576.270887476457	63.314	0.61504	63.314	63.069	63.684	0					16	11	2	0	0	0	0.57844	1	22904	22904		24.991	4.5373	1	1101000	+		1413	16778	884	898	1394	1394					-0.043775446383278904
AENGLTVRL	9	Unmodified	_AENGLTVRL_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-SECPEP	A375_MHC_IP_R1	1	487.1763916015625	2	486.777274	971.539994	-0.13045	-6.3501E-05	-0.21664	-0.00010546	-0.3471	-0.00016896	486.7771060933834	56.452	0.96317	56.452	55.841	56.804	0					41	18	3	0	0	0	0.16595	1	20164	20164		53.404	9.5457	1	19594000			1414	1649	885	899	1395	1395					0.053085723004642205
AENGLTVRL	9	Unmodified	_AENGLTVRL_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	A375_MHC_IP_R2	2	486.6735534667969	2	486.777274	971.539994	-0.67569	-0.00032891	0.099101	4.824E-05	-0.57659	-0.00028067	486.7771721103555	55.552	0.96458	56.303	55.678	56.642	0.75075					52	18	4	0	0	0	0.12591	1	20899	20899		46.022	2.2499	1	24765000			1415	1649	885	899	1396	1396					0.053085723004642205
AENIKDQFLY	10	Unmodified	_AENIKDQFLY_					0	0	0			REV__ENSG00000139865|ENST00000553443|TTC6	REV__ENSG00000139865|ENST00000553443|TTC6	MULTI-MSMS	A375_MHC_IP_R1	1	621.2137451171875	2	620.814053	1239.61355	0.013121	8.1459E-06	-0.37858	-0.00023503	-0.36546	-0.00022688	620.8139547475079	69.711	0.65748	69.711	69.377	70.034	0					23	12	3	0	0	0	0.56082	1	25306	25306		34.402	34.402	1	2801300	+		1416	19183	886	900	1397	1397					0.0033307595228961873
AENIPENPLKY	11	Unmodified	_AENIPENPLKY_					0	0	0		ENSG00000138378|ENST00000392320|STAT4;ENST00000495849.5_1_2:191897681-192012929:-|nuORF;ENST00000463951.1_1_2:191896174-191898315:-|nuORF;nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	ENSG00000138378|ENST00000392320|STAT4;nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	644.9984130859375	2	644.33261	1286.65067	-0.34329	-0.00022119	-0.10703	-6.8963E-05	-0.45032	-0.00029016	644.3322576904521	62.529	0.46137	62.529	62.351	62.813	0					14	8	2	0	0	0	0.76456	1	22591	22591		38.559	24.944	1	1738500			1417	3306;4984	887	901	1398	1398					0.01880747498034907
AENIQPGEQKY	11	Unmodified	_AENIQPGEQKY_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.G674Wfs*6|1|0.27|ENSG00000114867|chr3:184323170-184323171|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	A375_MHC_IP_R1	1	639.211669921875	2	638.812042	1275.60953	-0.99569	-0.00063606	-0.018927	-1.2091E-05	-1.0146	-0.00064815	638.8120430835853	26.456	0.5072	26.456	26.271	26.779	0					20	9	4	0	0	0	0.00010348	1	7894	7894		135.87	106.03	1	8387300			1418	3254	888	902	1399	1399					-0.017250135414315082
AENIQPGEQKY	11	Unmodified	_AENIQPGEQKY_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.G674Wfs*6|1|0.27|ENSG00000114867|chr3:184323170-184323171|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	A375_MHC_IP_R2	2	639.2108154296875	2	638.812042	1275.60953	-1.1978	-0.00076516	0.26518	0.0001694	-0.9326	-0.00059576	638.8121816083498	25.944	0.45839	26.604	26.449	26.907	0.65992					20	8	3	0	0	0	4.3556E-13	1	8727	8727		179.08	138.84	1	9096800			1419	3254	888	902	1400	1400					-0.017250135414315082
AENISRVLY	9	Unmodified	_AENISRVLY_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENSG00000068976|ENST00000164139|PYGM;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	A375_MHC_IP_R2	2	533.1898193359375	2	532.790381	1063.56621	-1.2828	-0.00068345	-0.05535	-2.949E-05	-1.3381	-0.00071294	532.7904100848081	53.109	1.271	53.86	53.082	54.353	0.75105					66	24	5	0	0	0	0.049608	1	19963	19963		93.938	31.365	1	83956000			1420	2241;2187	889	903	1401	1401					0.03696841471969492
AENKSHMEV	9	Unmodified	_AENKSHMEV_					0	0	0			REV__ENST00000478553.1_1_20:4763759-4763870:-|nuORF	REV__ENST00000478553.1_1_20:4763759-4763870:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	522.6609497070312	2	522.742573	1043.47059	-0.61892	-0.00032354	-2.6656	-0.0013934	-3.2846	-0.001717	522.741157343233	39.961	0.40528	40.735	40.524	40.93	0.77451					11	7	2	0	0	0	0.67483	1	14787	14787		20.454	1.1966	1	1106100	+		1421	25216	890	904	1402	1402					-0.04940254710595582
AENLFIFGL	9	Unmodified	_AENLFIFGL_					0	0	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R1	1	512.677978515625	2	512.279118	1022.54368	-0.74478	-0.00038153	-0.57851	-0.00029636	-1.3233	-0.00067789	512.2787331537008	134.19	0.25266	134.19	134.07	134.32	0					10	4	3	0	0	0	0.010171	1	51758	51758		96.111	3.2888	1	13443000			1422	2241	891	905	1403	1403					0.03331242074330021
AENLFIFGL	9	Unmodified	_AENLFIFGL_					0	0	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R2	2	512.6790161132812	2	512.279118	1022.54368	-0.66061	-0.00033842	0.08782	4.4988E-05	-0.5728	-0.00029343	512.2791064252599	134.07	0.35965	134.23	134.11	134.47	0.16487					10	6	3	0	0	0	0.010171	1	52752	52752		96.111	14.498	1	8300800			1423	2241	891	905	1404	1404					0.03331242074330021
AENLLKNYS	9	Unmodified	_AENLLKNYS_					0	0	0		nc|ENSG00000117650|P51955-2|NEK2;nc|ENSG00000117650|P51955-4|NEK2;ENSG00000117650|ENST00000366999|NEK2	nc|ENSG00000117650|P51955-2|NEK2	nc|ENSG00000117650|P51955-2|NEK2	MULTI-SECPEP	A375_MHC_IP_R2	2	526.619140625	2	526.274564	1050.53457	-0.77119	-0.00040586	0.63609	0.00033476	-0.1351	-7.1101E-05	526.7760455343277	61.71	0.75558	62.455	62.121	62.876	0.74472					23	14	3	0	0	0	0.65246	1	23526	23526		21.747	3.6003	1	1803300			1424	3505	892	906	1405	1405					0.011328487179980584
AENLPKQLA	9	Unmodified	_AENLPKQLA_					0	0	0		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-SECPEP	A375_MHC_IP_R1	1	492.47735595703125	2	492.279649	982.544745	-0.12911	-6.3556E-05	-0.14138	-6.9599E-05	-0.27049	-0.00013316	492.2793560300361	35.782	0.51078	35.782	35.522	36.033	0					19	9	3	0	0	0	0.11849	1	11942	11942		61.602	23.426	1	3177500			1425	1276	893	907	1406	1406					0.052774564432297666
AENLPKQLA	9	Unmodified	_AENLPKQLA_					0	0	0		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-SECPEP	A375_MHC_IP_R2	2	492.4773864746094	2	492.279649	982.544745	-0.73312	-0.0003609	-0.57062	-0.00028091	-1.3037	-0.00064181	492.27947068043903	35.015	0.55489	35.779	35.425	35.98	0.76338					20	10	3	0	0	0	0.11849	1	12687	12687		61.602	23.426	1	2849800			1426	1276	893	907	1407	1407					0.052774564432297666
AENNHTVAF	9	Unmodified	_AENNHTVAF_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-SECPEP	A375_MHC_IP_R1	1	502.135009765625	2	501.735606	1001.45666	-0.33056	-0.00016585	-0.80204	-0.00040241	-1.1326	-0.00056826	501.73531569181364	31.668	1.0196	31.668	31.211	32.231	0					28	19	3	0	0	0	0.53748	1	10165	10165		18.146	1.0335	1	2149600			1427	9060	894	908	1408	1408					-0.044011641473844065
AENNINLIF	9	Unmodified	_AENNINLIF_					0	0	0		ENSG00000082781|ENST00000296181|ITGB5	ENSG00000082781|ENST00000296181|ITGB5	ENSG00000082781|ENST00000296181|ITGB5	MULTI-MSMS	A375_MHC_IP_R1	1	524.6770629882812	2	524.277106	1046.53966	-0.16296	-8.5436E-05	0.23551	0.00012347	0.072549	3.8036E-05	524.2771151553246	116.22	0.66071	116.22	115.89	116.55	0					25	12	3	0	0	0	0.029064	1	42631	42631		75.761	10.526	1	6118900			1428	1766	895	909	1409	1409					0.01825152580613576
AENNINLIF	9	Unmodified	_AENNINLIF_					0	0	0		ENSG00000082781|ENST00000296181|ITGB5	ENSG00000082781|ENST00000296181|ITGB5	ENSG00000082781|ENST00000296181|ITGB5	MULTI-MSMS	A375_MHC_IP_R2	2	524.6767578125	2	524.277106	1046.53966	-0.33744	-0.00017691	-0.4965	-0.0002603	-0.83393	-0.00043721	524.2769205626324	115.32	0.81336	116.01	115.63	116.44	0.68999					25	15	3	0	0	0	0.029064	1	43472	43472		75.761	10.526	1	8513500			1429	1766	895	909	1410	1410					0.01825152580613576
AENPDWYYTE	10	Unmodified	_AENPDWYYTE_					0	0	0		nc|ENSG00000148702|Q14520-2|HABP2;ENSG00000148702|ENST00000351270|HABP2	nc|ENSG00000148702|Q14520-2|HABP2	nc|ENSG00000148702|Q14520-2|HABP2	MULTI-SECPEP	A375_MHC_IP_R1	1	429.1191711425781	3	429.843659	1286.50915	-0.20632	-8.8685E-05	-0.78324	-0.00033667	-0.98955	-0.00042535	429.8433009056719	34.294	0.40421	34.294	34.103	34.507	0					17	7	3	0	0	0	0.94421	1	11324	11324		0.69767	0.69767	1	2052100			1430	5759	896	910	1411	1411					-0.12264670595095595
AENPFLTHL	9	Unmodified	_AENPFLTHL_					0	0	0		ENSG00000163932|ENST00000330452|PRKCD;nc|ENSG00000163932|Q05655-2|PRKCD	ENSG00000163932|ENST00000330452|PRKCD	ENSG00000163932|ENST00000330452|PRKCD	MULTI-MSMS	A375_MHC_IP_R1	1	521.6717529296875	2	521.271824	1040.5291	-0.33942	-0.00017693	0.043886	2.2876E-05	-0.29553	-0.00015405	521.2718299425426	82.46	1.0125	82.46	82.062	83.075	0					50	19	4	0	0	0	0.021889	1	30085	30085		81.89	31.957	1	30464000			1431	6746	897	911	1412	1412					0.010451699261693648
AENPFLTHL	9	Unmodified	_AENPFLTHL_					0	0	0		ENSG00000163932|ENST00000330452|PRKCD;nc|ENSG00000163932|Q05655-2|PRKCD	ENSG00000163932|ENST00000330452|PRKCD	ENSG00000163932|ENST00000330452|PRKCD	MULTI-MSMS	A375_MHC_IP_R2	2	521.6712036132812	2	521.271824	1040.5291	-0.69204	-0.00036074	0.013672	7.1271E-06	-0.67837	-0.00035361	521.2717173280887	81.547	0.80716	82.29	81.928	82.735	0.74293					48	15	4	0	0	0	0.021889	2	30918	30918;30970		81.89	31.957	1	28162000			1432	6746	897	911	1413;1414	1413					0.010451699261693648
AENPFVVSM	9	Oxidation (M)	_AENPFVVSM(Oxidation (M))_		AENPFVVSM(1)		AENPFVVSM(60)	0	0	1		nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4;ENST00000467367.5_1_1:46487726-46489696:+|nuORF;nc|ENSG00000099308|O60307|MAST3;ENSG00000099308|ENST00000687212|MAST3;nc|ENSG00000086015|Q6P0Q8-2|MAST2;ENSG00000086015|ENST00000361297|MAST2	nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000086015|Q6P0Q8-2|MAST2	nc|ENSG00000069020|O15021-2|MAST4	MULTI-MSMS	A375_MHC_IP_R1	1	505.63580322265625	2	505.236593	1008.45863	-0.26262	-0.00013268	-0.74786	-0.00037785	-1.0105	-0.00051053	505.23623184089934	72.687	0.60813	72.687	72.372	72.98	0					18	11	2	0	0	0	0.06083	1	26449	26449		60.074	32.445	1	1767100			1433	1472;1826	898	912	1415	1415		43			-0.04525871453779473
AENPFVVSM	9	Oxidation (M)	_AENPFVVSM(Oxidation (M))_		AENPFVVSM(1)		AENPFVVSM(60)	0	0	1		nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4;ENST00000467367.5_1_1:46487726-46489696:+|nuORF;nc|ENSG00000099308|O60307|MAST3;ENSG00000099308|ENST00000687212|MAST3;nc|ENSG00000086015|Q6P0Q8-2|MAST2;ENSG00000086015|ENST00000361297|MAST2	nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000086015|Q6P0Q8-2|MAST2	nc|ENSG00000069020|O15021-2|MAST4	MULTI-MSMS	A375_MHC_IP_R2	2	505.63580322265625	2	505.236593	1008.45863	-0.94835	-0.00047914	-0.20341	-0.00010277	-1.1518	-0.00058191	505.23649570467455	72.06	0.60738	72.795	72.364	72.971	0.73421					20	11	2	0	0	0	0.06083	1	27340	27340		60.074	30.992	1	1649200			1434	1472;1826	898	912	1416	1416		43			-0.04525871453779473
AENPGKYNI	9	Unmodified	_AENPGKYNI_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-MSMS	A375_MHC_IP_R1	1	503.6530456542969	2	503.253631	1004.49271	-0.77447	-0.00038976	0.021765	1.0953E-05	-0.75271	-0.0003788	503.2536263113905	29.636	0.64649	29.636	29.403	30.049	0					35	12	4	0	0	0	0.018261	1	9291	9291		85.642	41.869	1	350640000			1435	6014	899	913	1417	1417					-0.009357069705288268
AENPGKYNI	9	Unmodified	_AENPGKYNI_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-MSMS	A375_MHC_IP_R2	2	503.5066223144531	2	503.253631	1004.49271	-1.4617	-0.00073559	0.18235	9.1769E-05	-1.2793	-0.00064382	503.25367582351197	29.006	0.90121	29.705	29.434	30.335	0.69872					45	17	4	0	0	0	0.001114	3	10075	9999;10045;10075		152.89	101.26	1	347250000			1436	6014	899	913	1418;1419;1420	1420					-0.009357069705288268
AENPGKYNI	9	Unmodified	_AENPGKYNI_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-MSMS	A375_MHC_IP_R2	2	1005.898681640625	1	1005.49999	1004.49271	-0.78648	-0.00079081	-0.61468	-0.00061807	-1.4012	-0.0014089	1005.4994000647474	28.978	0.44723	29.676	29.534	29.981	0.69872					14	8	2	0	0	0	0.0098926	1	10088	10088		118.07	68.514	1	20103000			1437	6014	899	913	1421	1421					-0.009357069705288268
AENPGKYNI	9	Unmodified	_AENPGKYNI_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	1005.49999	1004.49271	-0.20312	-0.00020424	-1.2569	-0.0012638	-1.46	-0.0014681	1005.4987222659795	29.632	0.34441	29.632	29.504	29.848	0	-0.022293	-0.00037915	NaN	118.07	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32905000			1438	6014	899	913							-0.009357069705288268
AENPGKYNIL	10	Unmodified	_AENPGKYNIL_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-MSMS	A375_MHC_IP_R1	1	560.1956787109375	2	559.795663	1117.57677	-0.35905	-0.00020099	0.59172	0.00033124	0.23267	0.00013025	559.7957653454237	51.488	0.50783	51.488	51.168	51.676	0					28	9	4	0	0	0	0.27942	1	18270	18270		55.503	19.376	1	3872100			1439	6014	900	914	1422	1422					0.022688241263722375
AENPGKYNIL	10	Unmodified	_AENPGKYNIL_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-SECPEP	A375_MHC_IP_R2	2	560.1956176757812	2	559.795663	1117.57677	-0.78186	-0.00043768	0.99518	0.0005571	0.21332	0.00011942	559.7959654681014	50.667	0.55736	51.421	51.057	51.615	0.75406					20	10	3	0	0	0	0.78163	1	19072	19072		41.956	41.956	1	3889100			1440	6014	900	914	1423	1423					0.022688241263722375
AENPRGTFL	9	Unmodified	_AENPRGTFL_					0	0	0		ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC	ENSG00000197122|ENST00000373578|SRC	ENSG00000197122|ENST00000373578|SRC	MULTI-SECPEP	A375_MHC_IP_R1	1	503.1620178222656	2	502.761623	1003.50869	-0.19734	-9.9214E-05	-0.052023	-2.6155E-05	-0.24936	-0.00012537	502.761587822703	43.246	0.5601	43.246	42.993	43.553	0					16	10	2	0	0	0	0.14554	1	15017	15017		65.474	7.7517	1	5449100			1441	9118	901	915	1424	1424					0.007079992663648227
AENPRGTFL	9	Unmodified	_AENPRGTFL_					0	0	0		ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC	ENSG00000197122|ENST00000373578|SRC	ENSG00000197122|ENST00000373578|SRC	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1613464355469	2	502.761623	1003.50869	-0.57588	-0.00028953	-0.50687	-0.00025484	-1.0828	-0.00054437	502.7613923470196	42.372	0.56162	43.145	42.91	43.472	0.7724					19	10	3	0	0	0	0.14554	1	15748	15748		65.474	7.7517	1	4882900			1442	9118	901	915	1425	1425					0.007079992663648227
AENPSIQLL	9	Unmodified	_AENPSIQLL_					0	0	0		ENSG00000088888|ENST00000428216|MAVS;nc|ENSG00000088888|Q7Z434-4|MAVS	ENSG00000088888|ENST00000428216|MAVS	ENSG00000088888|ENST00000428216|MAVS	MULTI-MSMS	A375_MHC_IP_R1	1	492.69183349609375	2	492.771657	983.528761	-0.42267	-0.00020828	-3.3768	-0.001664	-3.7995	-0.0018723	492.77155324112965	94.189	1.0141	94.189	93.738	94.752	0					54	19	4	0	0	0	0.12748	1	34682	34682		45.74	3.9002	1	21289000			1443	1903	902	916	1426	1426					0.03633750206347486
AENPSIQLL	9	Unmodified	_AENPSIQLL_					0	0	0		ENSG00000088888|ENST00000428216|MAVS;nc|ENSG00000088888|Q7Z434-4|MAVS	ENSG00000088888|ENST00000428216|MAVS	ENSG00000088888|ENST00000428216|MAVS	MULTI-MSMS	A375_MHC_IP_R2	2	492.6918029785156	2	492.771657	983.528761	-0.38192	-0.0001882	-3.3201	-0.001636	-3.702	-0.0018242	492.7717196332116	93.443	0.96541	94.188	93.752	94.717	0.74473					57	18	5	0	0	0	0.014789	1	35565	35565		90.135	18.213	1	23267000			1444	1903	902	916	1427	1427					0.03633750206347486
AENQELIDQ	9	Unmodified	_AENQELIDQ_					0	0	0			REV__nc|ENSG00000126777|Q86UP2-2|KTN1	REV__nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	A375_MHC_IP_R1	1	529.6976928710938	2	530.251286	1058.48802	-0.57849	-0.00030675	-1.1979	-0.00063517	-1.7763	-0.00094191	530.2505045391513	61.548	0.76665	61.548	61.279	62.046	0					21	14	2	0	0	0	0.13845	1	22181	22181		43.772	7.2662	1	2920900	+		1445	18396	903	917	1428	1428					-0.038886359039452145
AENQELIDQ	9	Unmodified	_AENQELIDQ_					0	0	0			REV__nc|ENSG00000126777|Q86UP2-2|KTN1	REV__nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-SECPEP	A375_MHC_IP_R2	2	529.6973876953125	2	530.251286	1058.48802	-0.89969	-0.00047706	-0.20585	-0.00010915	-1.1055	-0.00058622	530.2511565299804	60.839	1.1663	61.584	60.955	62.121	0.74503					30	22	2	0	0	0	0.27742	1	22949	22949		51.63	17.228	1	2746700	+		1446	18396	903	917	1429	1429					-0.038886359039452145
AENQTVVKY	9	Unmodified	_AENQTVVKY_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160;ENST00000527126.1_1_11:47843172-47843701:-|nuORF	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	A375_MHC_IP_R1	1	526.6741333007812	2	526.274564	1050.53457	-0.69447	-0.00036548	0.089835	4.7278E-05	-0.60464	-0.00031821	526.274590846463	27.946	0.70499	27.946	27.634	28.339	0					39	13	4	0	0	0	0.0024528	1	8654	8654		139.78	83.605	1	68466000			1447	1108	904	918	1430	1430					0.011328487179980584
AENQTVVKY	9	Unmodified	_AENQTVVKY_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160;ENST00000527126.1_1_11:47843172-47843701:-|nuORF	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	A375_MHC_IP_R2	2	526.6741333007812	2	526.274564	1050.53457	-0.38678	-0.00020355	-0.43412	-0.00022846	-0.8209	-0.00043202	526.2743304768957	27.343	0.65987	28.021	27.792	28.452	0.67857					35	12	4	0	0	0	0.0071491	1	9399	9399		166.77	97.664	1	82584000			1448	1108	904	918	1431	1431					0.011328487179980584
AENRSAFSY	9	Unmodified	_AENRSAFSY_					0	0	0		ENST00000468272.1_1_20:402858-409338:+|nuORF;nc|ENSG00000125826|Q9BYM8-3|RBCK1;ENSG00000125826|ENST00000356286|RBCK1	ENST00000468272.1_1_20:402858-409338:+|nuORF	ENST00000468272.1_1_20:402858-409338:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	522.6612548828125	2	522.740888	1043.46722	-0.49263	-0.00025752	-1.1256	-0.00058842	-1.6183	-0.00084594	522.7403447795218	40.787	0.45375	40.787	40.609	41.063	0					11	8	2	0	0	0	0.67483	1	14021	14021		14.838	10.509	1	1176700			1449	3996	905	919	1432	1432					-0.0527718149296561
AENTMKSLL	9	Unmodified	_AENTMKSLL_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-MSMS	A375_MHC_IP_R2	2	503.67083740234375	2	503.765517	1005.51648	-0.91315	-0.00046002	-1.0861	-0.00054716	-1.9993	-0.0010072	503.76493803123964	51.696	0.45692	52.448	52.169	52.626	0.75225					12	8	2	0	0	0	0.14858	1	19467	19467		41.956	7.8531	1	1244200			1450	3109	906	920	1433	1433					0.013943904716484212
AENVGKPTI	9	Unmodified	_AENVGKPTI_					0	0	0		ENSG00000127990|ENST00000648936|SGCE;nc|ENSG00000127990|O43556-3|SGCE;nc|ENSG00000127990|O43556-4|SGCE	ENSG00000127990|ENST00000648936|SGCE	ENSG00000127990|ENST00000648936|SGCE	MULTI-SECPEP	A375_MHC_IP_R1	1	465.15826416015625	2	464.758549	927.502546	-0.44959	-0.00020895	0.048153	2.238E-05	-0.40143	-0.00018657	464.7585062652241	27.977	0.45315	27.977	27.735	28.188	0					11	8	2	0	0	0	0.32966	1	8600	8600		42.312	9.5268	1	2027200			1451	4116	907	921	1434	1434					0.03589481034839537
AENVPASKF	9	Unmodified	_AENVPASKF_					0	0	0		nc|ENSG00000107036|Q4ADV7-2|RIC1;RIC1|p.R1288Efs*5|1|0.39|ENSG00000107036|chr9:5772956-5772956|C/-|frameshift_variant;nc|ENSG00000107036|Q4ADV7-3|RIC1;ENSG00000107036|ENST00000414202|RIC1	nc|ENSG00000107036|Q4ADV7-2|RIC1	nc|ENSG00000107036|Q4ADV7-2|RIC1	MULTI-MSMS	A375_MHC_IP_R1	1	482.1505126953125	2	481.750724	961.486896	-0.67951	-0.00032735	-1.0962	-0.0005281	-1.7757	-0.00085545	481.7507228185011	30.614	0.80814	30.614	30.301	31.109	0					41	15	4	0	0	0	0.0092755	1	9733	9733		103.82	61.729	1	16221000			1452	2722	908	922	1435	1435					0.0046119451779986775
AENVPASKF	9	Unmodified	_AENVPASKF_					0	0	0		nc|ENSG00000107036|Q4ADV7-2|RIC1;RIC1|p.R1288Efs*5|1|0.39|ENSG00000107036|chr9:5772956-5772956|C/-|frameshift_variant;nc|ENSG00000107036|Q4ADV7-3|RIC1;ENSG00000107036|ENST00000414202|RIC1	nc|ENSG00000107036|Q4ADV7-2|RIC1	nc|ENSG00000107036|Q4ADV7-2|RIC1	MULTI-MSMS	A375_MHC_IP_R2	2	482.15045166015625	2	481.750724	961.486896	-0.91785	-0.00044218	-1.0829	-0.00052166	-2.0007	-0.00096384	481.7507894420037	29.864	1.011	30.563	30.134	31.145	0.69872					49	19	4	0	0	0	0.016157	1	10464	10464		88.364	46.524	1	23018000			1453	2722	908	922	1436	1436					0.0046119451779986775
AENYHDIKRI	10	Unmodified	_AENYHDIKRI_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	A375_MHC_IP_R1	1	420.9569396972656	3	420.222805	1257.64658	0.37025	0.00015559	0.024395	1.0251E-05	0.39464	0.00016584	420.2229673331509	21.706	0.55761	21.706	21.505	22.062	0					23	10	3	0	0	0	0.42595	1	5753	5753		32.616	15.045	1	2820300			1454	3298	909	923	1437	1437					0.028067027950100965
AENYHDIKRI	10	Unmodified	_AENYHDIKRI_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R2	2	420.623046875	3	420.222805	1257.64658	-0.41536	-0.00017454	0.3976	0.00016708	-0.017762	-7.4638E-06	420.55716249460176	20.172	0.66019	20.782	20.499	21.16	0.6103					27	12	3	0	0	0	0.65002	1	6247	6247		35.996	20.457	1	2795300			1455	3298	909	923	1438	1438					0.028067027950100965
AENYPTKRN	9	Unmodified	_AENYPTKRN_					0	0	0		ENST00000474097.5_1_7:6618309-6618369:+|nuORF;ENST00000405731.7_1_7:6618297-6620275:+|nuORF	ENST00000474097.5_1_7:6618309-6618369:+|nuORF	ENST00000474097.5_1_7:6618309-6618369:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	364.92047119140625	3	364.8526	1091.53597	-0.39135	-0.00014278	1.7995	0.00065655	1.4082	0.00051377	364.85344245412205	26.312	0.40579	26.972	26.703	27.109	0.65992					17	7	3	0	0	0	0.49205	1	8916	8916		26.021	6.3947	1	4630900			1456	11593	910	924	1439	1439					-0.006135171932328376
AEPAEYLKY	9	Unmodified	_AEPAEYLKY_					0	0	0		ENSG00000101493|ENST00000443185|ZNF516	ENSG00000101493|ENST00000443185|ZNF516	ENSG00000101493|ENST00000443185|ZNF516	MULTI-MSMS	A375_MHC_IP_R2	2	542.6712646484375	2	542.27149	1082.52843	-1.0745	-0.00058268	-0.65266	-0.00035392	-1.7272	-0.0009366	542.2710599379614	54.406	0.81176	55.157	54.763	55.575	0.75075					22	15	2	0	0	0	0.10622	1	20479	20479		49.554	15.153	1	5450400			1457	2305	911	925	1440	1440					-0.009536695135238915
AEPAEYLKY	9	Unmodified	_AEPAEYLKY_					0	0	0		ENSG00000101493|ENST00000443185|ZNF516	ENSG00000101493|ENST00000443185|ZNF516	ENSG00000101493|ENST00000443185|ZNF516	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	542.27149	1082.52843	-0.6231	-0.00033789	-0.20616	-0.00011179	-0.82926	-0.00044968	542.2711387120092	55.037	0.96519	55.037	54.619	55.584	0	-0.059865	0.00025853	NaN	49.554	29	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7385300			1458	2305	911	925							-0.009536695135238915
AEPAKTYFIDV	11	Unmodified	_AEPAKTYFIDV_					0	0	0			REV__ENSG00000204560|ENST00000376442|DHX16	REV__ENSG00000204560|ENST00000376442|DHX16	MULTI-MSMS	A375_MHC_IP_R1	1	627.723876953125	2	627.324254	1252.63395	-0.84936	-0.00053282	0.38987	0.00024457	-0.45949	-0.00028825	627.324368306393	133.53	0.25478	133.53	133.41	133.66	0					8	4	2	0	0	0	0.36212	1	51500	51500		41.956	8.5106	1	22605000	+		1459	22524	912	926	1441	1441					0.017742466120807876
AEPAKTYFIDV	11	Unmodified	_AEPAKTYFIDV_					0	0	0			REV__ENSG00000204560|ENST00000376442|DHX16	REV__ENSG00000204560|ENST00000376442|DHX16	MULTI-MSMS	A375_MHC_IP_R2	2	627.7242431640625	2	627.324254	1252.63395	-0.74733	-0.00046882	0.50262	0.0003153	-0.24472	-0.00015352	627.3244592400349	133.41	0.30252	133.58	133.45	133.75	0.16487					12	5	3	0	0	0	0.36212	1	52485	52485		41.956	8.5106	1	13667000	+		1460	22524	912	926	1442	1442					0.017742466120807876
AEPAKTYFIDV	11	Unmodified	_AEPAKTYFIDV_					0	0	0			REV__ENSG00000204560|ENST00000376442|DHX16	REV__ENSG00000204560|ENST00000376442|DHX16	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	627.324254	1252.63395	-0.84936	-0.00053282	0.38987	0.00024457	-0.45949	-0.00028825	627.324368306393	133.53	0.25478	133.53	133.41	133.66	0	-0.022568	-7.0075E-05	NaN	41.956	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22605000	+		1461	22524	912	926							0.017742466120807876
AEPAKTYFIDV	11	Unmodified	_AEPAKTYFIDV_					0	0	0			REV__ENSG00000204560|ENST00000376442|DHX16	REV__ENSG00000204560|ENST00000376442|DHX16	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	627.324254	1252.63395	-0.74733	-0.00046882	0.50262	0.0003153	-0.24472	-0.00015352	627.3244592400349	133.41	0.30252	133.58	133.45	133.75	0.16487	0.022568	7.1382E-05	NaN	41.956	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13667000	+		1462	22524	912	926							0.017742466120807876
AEPDARFSGFY	11	Unmodified	_AEPDARFSGFY_					0	0	0		ENSG00000150938|ENST00000280527|CRIM1	ENSG00000150938|ENST00000280527|CRIM1	ENSG00000150938|ENST00000280527|CRIM1	MSMS	A375_MHC_IP_R1	1	630.5681762695312	2	630.288202	1258.56185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.798	1	69.798	69.298	70.298	0								0	0	0	0.16138	1	25333	25333		11.495	3.8858	1				1463	5869	913	927	1443	1443					-0.05708667741600948
AEPDESNARYF	11	Unmodified	_AEPDESNARYF_					0	0	0		ENSG00000177889|ENST00000318066|UBE2N;nc|ENSG00000276380|Q5JXB2|UBE2NL	ENSG00000177889|ENST00000318066|UBE2N	ENSG00000177889|ENST00000318066|UBE2N	MULTI-MSMS	A375_MHC_IP_R1	1	650.185791015625	2	649.786024	1297.55749	-0.158	-0.00010266	-0.18789	-0.00012209	-0.34589	-0.00022475	649.7858586032243	42.707	0.70795	42.707	42.285	42.993	0					21	13	2	0	0	0	0.21478	1	14820	14820		53.317	43.166	1	3100800			1464	8116	914	928	1444	1444					-0.07938176955190102
AEPDESNARYF	11	Unmodified	_AEPDESNARYF_					0	0	0		ENSG00000177889|ENST00000318066|UBE2N;nc|ENSG00000276380|Q5JXB2|UBE2NL	ENSG00000177889|ENST00000318066|UBE2N	ENSG00000177889|ENST00000318066|UBE2N	MULTI-MSMS	A375_MHC_IP_R2	2	650.1857299804688	2	649.786024	1297.55749	-0.6709	-0.00043594	-0.1128	-7.3294E-05	-0.7837	-0.00050923	649.7858583418913	42.044	0.71545	42.818	42.504	43.22	0.77451					27	13	3	0	0	0	0.15207	1	15655	15655		61.09	45.841	1	2540100			1465	8116	914	928	1445	1445					-0.07938176955190102
AEPDFVVTDF	10	Unmodified	_AEPDFVVTDF_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	A375_MHC_IP_R1	1	570.6663818359375	2	570.266404	1138.51826	-0.41655	-0.00023754	0.082815	4.7227E-05	-0.33373	-0.00019032	570.2664958643817	119.69	0.61109	119.69	119.33	119.95	0					17	11	2	0	0	0	0.086961	3	44293	44148;44230;44293		66.457	46.003	1	9598000			1466	4297	915	929	1446;1447;1448	1448					-0.045462772387509176
AEPDFVVTDF	10	Unmodified	_AEPDFVVTDF_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	A375_MHC_IP_R2	2	1139.3245849609375	1	1139.52553	1138.51826	0.21038	0.00023973	1.9981	0.0022769	2.2085	0.0025167	1139.5273376222694	119.01	0.4591	119.62	119.3	119.76	0.60909					11	8	2	0	0	0	0.098574	1	45201	45201		63.961	41.224	1	18831000			1467	4297	915	929	1449	1449					-0.045462772387509176
AEPDFVVTDF	10	Unmodified	_AEPDFVVTDF_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	A375_MHC_IP_R2	2	570.6661376953125	2	570.266404	1138.51826	-0.23965	-0.00013667	0.19793	0.00011287	-0.041727	-2.3796E-05	570.2663774191744	119.07	0.40784	119.6	119.33	119.73	0.5321					10	7	2	0	0	0	0.015059	1	45246	45246		88.954	66.218	1	9492300			1468	4297	915	929	1450	1450					-0.045462772387509176
AEPDFVVTDF	10	Unmodified	_AEPDFVVTDF_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MATCH	A375_MHC_IP_R1	1		1	1139.52553	1138.51826	-0.08005	-9.1219E-05	1.4681	0.0016729	1.3881	0.0015817	1139.52710940671	119.67	0.56026	119.67	119.44	120	0	0.024164	-0.00030621	NaN	63.961	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16411000			1469	4297	915	929							-0.045462772387509176
AEPDIIEQL	9	Unmodified	_AEPDIIEQL_					0	0	0		ENSG00000122550|ENST00000339077|KLHL7;nc|ENSG00000122550|Q8IXQ5-5|KLHL7;nc|ENSG00000122550|Q8IXQ5-2|KLHL7;nc|ENSG00000122550|Q8IXQ5-3|KLHL7;nc|ENSG00000122550|Q8IXQ5-4|KLHL7	ENSG00000122550|ENST00000339077|KLHL7	ENSG00000122550|ENST00000339077|KLHL7	MULTI-SECPEP	A375_MHC_IP_R1	1	513.7030029296875	2	514.268947	1026.52334	-0.44852	-0.00023066	0.1082	5.5643E-05	-0.34032	-0.00017502	514.2689139397381	101.47	0.85931	101.47	101.09	101.95	0					48	16	4	0	0	0	0.010802	1	37299	37299		114.65	39.72	1	16604000			1470	3790	916	930	1451	1451					0.011140266238726326
AEPDIIEQL	9	Unmodified	_AEPDIIEQL_					0	0	0		ENSG00000122550|ENST00000339077|KLHL7;nc|ENSG00000122550|Q8IXQ5-5|KLHL7;nc|ENSG00000122550|Q8IXQ5-2|KLHL7;nc|ENSG00000122550|Q8IXQ5-3|KLHL7;nc|ENSG00000122550|Q8IXQ5-4|KLHL7	ENSG00000122550|ENST00000339077|KLHL7	ENSG00000122550|ENST00000339077|KLHL7	MULTI-SECPEP	A375_MHC_IP_R2	2	513.7030639648438	2	514.268947	1026.52334	-0.59836	-0.00030772	0.26758	0.00013761	-0.33078	-0.00017011	514.2689829938845	100.71	0.92488	101.47	101.03	101.96	0.76278					46	17	4	0	0	0	0.0066573	1	38203	38203		139.14	53.866	1	16626000			1471	3790	916	930	1452	1452					0.011140266238726326
AEPDWRAGE	9	Unmodified	_AEPDWRAGE_					0	0	0			REV__ENSG00000114841|ENST00000420323|DNAH1	REV__ENSG00000114841|ENST00000420323|DNAH1	MULTI-MSMS	A375_MHC_IP_R1	1	515.6930541992188	2	515.733063	1029.45157	-0.76813	-0.00039615	-0.078035	-4.0245E-05	-0.84616	-0.00043639	515.733026621579	27.031	0.9581	27.031	26.373	27.331	0					34	18	2	0	0	0	0.68046	1	8134	8134		8.7454	0.83525	1	4461900	+		1472	17843	917	931	1453	1453					-0.06197468009986551
AEPFLFVD	8	Unmodified	_AEPFLFVD_					0	0	0		ENST00000567980.5_1_16:81819579-81955027:+|nuORF;ENSG00000197943|ENST00000564138|PLCG2	ENST00000567980.5_1_16:81819579-81955027:+|nuORF	ENST00000567980.5_1_16:81819579-81955027:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	469.63653564453125	2	469.236919	936.459284	-0.29795	-0.00013981	0.0043669	2.0491E-06	-0.29359	-0.00013776	469.2369425886174	73.106	0.60825	73.106	72.728	73.336	0					18	11	2	0	0	0	0.94479	1	26614	26614		13.508	13.508	1	1821200			1473	9209	918	932	1454	1454					-0.01148708742425697
AEPFLFVD	8	Unmodified	_AEPFLFVD_					0	0	0		ENST00000567980.5_1_16:81819579-81955027:+|nuORF;ENSG00000197943|ENST00000564138|PLCG2	ENST00000567980.5_1_16:81819579-81955027:+|nuORF	ENST00000567980.5_1_16:81819579-81955027:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	469.6366882324219	2	469.236919	936.459284	-0.80214	-0.0003764	0.41958	0.00019688	-0.38256	-0.00017951	469.2370824549419	72.23	0.65806	72.965	72.618	73.276	0.73421					19	12	2	0	0	0	0.94479	1	27428	27428		13.508	13.508	1	1441200			1474	9209	918	932	1455	1455					-0.01148708742425697
AEPGRLGLKF	10	Unmodified	_AEPGRLGLKF_					0	0	0		ENST00000564180.1_1_16:68877561-68893820:+|nuORF	ENST00000564180.1_1_16:68877561-68893820:+|nuORF	ENST00000564180.1_1_16:68877561-68893820:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	363.5854187011719	3	363.213469	1086.61858	0.067381	2.4474E-05	-0.13669	-4.9647E-05	-0.069306	-2.5173E-05	363.2133940189867	52.719	0.91385	52.719	52.387	53.301	0					49	17	5	0	0	0	0.70496	1	18908	18908		5.7834	0.48655	1	31516000			1475	13527	919	933	1456	1456					0.07873424605554646
AEPHAEPPPR	10	Unmodified	_AEPHAEPPPR_					0	0	0		ENST00000476718.1_1_1:1289695-1290347:-|nuORF;nc|ENSG00000162576|Q9BRK3-4|MXRA8;nc|ENSG00000162576|Q9BRK3-3|MXRA8;ENSG00000162576|ENST00000309212|MXRA8;nc|ENSG00000162576|Q9BRK3-2|MXRA8	ENST00000476718.1_1_1:1289695-1290347:-|nuORF	ENST00000476718.1_1_1:1289695-1290347:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	367.2675476074219	3	367.520962	1099.54106	0.53188	0.00019548	-0.80872	-0.00029722	-0.27683	-0.00010174	367.5208584223075	21.642	0.40576	21.642	21.352	21.757	0					18	7	3	0	0	0	0.91773	1	5743	5743		2.2527	0	1	902070			1476	6551	920	934	1457	1457					-0.004732133306333708
AEPHSHHSL	9	Unmodified	_AEPHSHHSL_					0	0	0			REV__ENST00000331595.8_1_X:152773909-152774230:+|nuORF	REV__ENST00000331595.8_1_X:152773909-152774230:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	509.1842041015625	2	507.741222	1013.46789	-0.41236	-0.00020937	0.03585	1.8203E-05	-0.37651	-0.00019117	507.7407790723289	52.369	0.60886	52.369	52.034	52.643	0					34	11	5	0	0	0	0.6898	1	18729	18729		7.9102	0.62092	1	4730300	+		1477	23632	921	935	1458	1458					-0.03830342053254299
AEPIDIQTW	9	Unmodified	_AEPIDIQTW_					0	0	0		ENSG00000123684|ENST00000366997|LPGAT1	ENSG00000123684|ENST00000366997|LPGAT1	ENSG00000123684|ENST00000366997|LPGAT1	MULTI-MSMS	A375_MHC_IP_R2	2	536.7150268554688	2	536.769114	1071.52368	-0.86958	-0.00046676	-3.0288	-0.0016258	-3.8984	-0.0020925	536.7672669602165	102.37	1.6791	103.13	102.41	104.09	0.76428					51	32	3	0	0	0	0.12771	1	38781	38781		45.7	25.285	1	2241400			1478	3857	922	936	1459	1459					-0.009225536563008063
AEPIDIQTW	9	Unmodified	_AEPIDIQTW_					0	0	0		ENSG00000123684|ENST00000366997|LPGAT1	ENSG00000123684|ENST00000366997|LPGAT1	ENSG00000123684|ENST00000366997|LPGAT1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	536.769114	1071.52368	-0.6618	-0.00035523	-2.8422	-0.0015256	-3.504	-0.0018808	536.7676922394597	103.15	1.3709	103.15	102.25	103.63	0	0.010082	9.1694E-05	NaN	45.7	41	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2637200			1479	3857	922	936							-0.009225536563008063
AEPLDRSKF	9	Unmodified	_AEPLDRSKF_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	A375_MHC_IP_R2	2	355.579345703125	3	354.857463	1061.55056	-0.60242	-0.00021377	-0.095322	-3.3826E-05	-0.69775	-0.0002476	354.8575152705265	26.475	0.35544	27.135	26.957	27.313	0.65992					9	6	2	0	0	0	0.71541	1	8886	8886		4.5289	0.33936	1	4890900			1480	2058	923	937	1460	1460					0.022245549549097632
AEPLPELCY	9	Unmodified	_AEPLPELCY_					0	0	0		ENSG00000184451|ENST00000332438|CCR10	ENSG00000184451|ENST00000332438|CCR10	ENSG00000184451|ENST00000332438|CCR10	MULTI-MSMS	A375_MHC_IP_R1	1	517.6925048828125	2	517.746793	1033.47903	-0.59003	-0.00030549	-0.075345	-3.9009E-05	-0.66537	-0.00034449	517.7467300739276	46.526	0.96461	46.526	46.195	47.159	0					41	18	4	0	0	0	0.64808	1	16497	16497		11.64	1.5664	1	40095000			1481	8586	924	938	1461	1461					-0.036367007939816176
AEPLPSNILEW	11	Unmodified	_AEPLPSNILEW_					0	0	0		ENST00000461142.3_1_1:1198606-1209210:-|nuORF;ENSG00000160087|ENST00000349431|UBE2J2;nc|ENSG00000160087|Q8N2K1-3|UBE2J2	ENST00000461142.3_1_1:1198606-1209210:-|nuORF	ENST00000461142.3_1_1:1198606-1209210:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	635.22802734375	2	634.829703	1267.64485	-0.80445	-0.00051069	-0.862	-0.00054723	-1.6665	-0.0010579	634.8292412833163	129.27	0.55945	129.27	129.09	129.65	0					13	10	2	0	0	0	0.049456	1	49730	49730		79.427	49.586	1	17085000			1482	6396	925	939	1462	1462					0.021736489863769748
AEPLSRPSI	9	Unmodified	_AEPLSRPSI_					0	0	0			REV__ENST00000491191.5_3_6:7108121-7176922:+|nuORF	REV__ENST00000491191.5_3_6:7108121-7176922:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	484.61651611328125	2	485.271824	968.529095	-0.029011	-1.4078E-05	0.69707	0.00033827	0.66806	0.00032419	485.27209795971737	39.191	0.25497	39.191	38.983	39.238	0					6	4	2	0	0	0	0.53748	1	13350	13350		18.146	0	1	1175700	+		1483	25119	926	940	1463	1463					0.04357169926197457
AEPPLRQP	8	Unmodified	_AEPPLRQP_					0	0	0			REV__nc|ENSG00000171681|Q6VMQ6-5|ATF7IP	REV__nc|ENSG00000171681|Q6VMQ6-5|ATF7IP	MULTI-MSMS	A375_MHC_IP_R1	1	454.65374755859375	2	454.253434	906.492316	-0.39019	-0.00017725	0.51439	0.00023366	0.1242	5.6418E-05	454.253485769593	32.385	0.60901	32.385	32.075	32.684	0					16	11	2	0	0	0	0.76654	1	10466	10466		15.847	1.9411	1	2668900	+		1484	21087	927	941	1464	1464					0.03532918100279403
AEPPLRQP	8	Unmodified	_AEPPLRQP_					0	0	0			REV__nc|ENSG00000171681|Q6VMQ6-5|ATF7IP	REV__nc|ENSG00000171681|Q6VMQ6-5|ATF7IP	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	454.253434	906.492316	-0.39019	-0.00017725	0.51439	0.00023366	0.1242	5.6418E-05	454.253485769593	32.385	0.60901	32.385	32.075	32.684	0	0.007891	0.00018773	NaN	15.847	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2668900	+		1485	21087	927	941							0.03532918100279403
AEPPLRQP	8	Unmodified	_AEPPLRQP_					0	0	0			REV__nc|ENSG00000171681|Q6VMQ6-5|ATF7IP	REV__nc|ENSG00000171681|Q6VMQ6-5|ATF7IP	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	454.253434	906.492316	-0.2427	-0.00011025	0.17442	7.9231E-05	-0.068281	-3.1017E-05	454.2533947048326	31.632	0.6093	32.369	32.095	32.704	0.73691	-0.007891	-0.00012114	NaN	15.847	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3568000	+		1486	21087	927	941							0.03532918100279403
AEPRALSRY	9	Unmodified	_AEPRALSRY_					0	0	0		ENST00000155926.8_1_2:12857592-12857697:+|nuORF	ENST00000155926.8_1_2:12857592-12857697:+|nuORF	ENST00000155926.8_1_2:12857592-12857697:+|nuORF	MSMS	A375_MHC_IP_R2	2	531.6878051757812	2	531.788173	1061.56179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.499	1	24.129	23.629	24.629	0.63014								0	0	0	0.15486	1	7573	7573		5.7319	1.4026	1				1487	10065	928	942	1465	1465					0.03347377049021816
AEPRHGELW	9	Unmodified	_AEPRHGELW_					0	0	0		ENSG00000101161|ENST00000266079|PRPF6;nc|ENSG00000101161|O94906-2|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	MULTI-SECPEP	A375_MHC_IP_R1	1	548.1723022460938	2	547.772522	1093.53049	-0.72347	-0.0003963	-0.025225	-1.3818E-05	-0.7487	-0.00041012	547.7724390426145	32.886	0.65553	32.886	32.535	33.19	0					29	12	3	0	0	0	0.55534	1	10643	10643		32.037	2.9559	1	12556000			1488	2259	929	943	1466	1466					-0.012531959850548446
AEPRLPLQLDD	11	Unmodified	_AEPRLPLQLDD_					0	0	0		nc|ENSG00000115866|P14868-2|DARS1;ENSG00000115866|ENST00000264161|DARS1	nc|ENSG00000115866|P14868-2|DARS1	nc|ENSG00000115866|P14868-2|DARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	634.0809326171875	2	633.838059	1265.66157	-0.54077	-0.00034276	-0.73742	-0.00046741	-1.2782	-0.00081017	633.8378116408501	56.321	0.35587	56.321	56.041	56.397	0					10	6	2	0	0	0	0.99018	1	20191	20191		11.495	2.1116	1	1041700			1489	3346	930	944	1467	1467					0.03936149872333772
AEPRPLESYC	10	Unmodified	_AEPRPLESYC_					0	0	0		ENSG00000135451|ENST00000257909|TROAP	ENSG00000135451|ENST00000257909|TROAP	ENSG00000135451|ENST00000257909|TROAP	MULTI-SECPEP	A375_MHC_IP_R1	1	388.9366760253906	3	388.849979	1163.52811	0.45668	0.00017758	0.38358	0.00014915	0.84026	0.00032673	388.84988053033027	38.957	1.4217	38.957	38.475	39.896	0					33	27	2	0	0	0	0.92832	1	13585	13585		5.4027	0	1	1788900			1490	4685	931	945	1468	1468					-0.047114125050256916
AEPWAVDSGV	10	Unmodified	_AEPWAVDSGV_					0	0	0		ENST00000502859.1_1_1:50307995-50310583:+|nuORF	ENST00000502859.1_1_1:50307995-50310583:+|nuORF	ENST00000502859.1_1_1:50307995-50310583:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	517.2257690429688	2	515.745639	1029.47673	-0.14153	-7.2992E-05	-0.024687	-1.2732E-05	-0.16621	-8.5724E-05	515.7455742752082	69.203	0.91275	69.203	68.869	69.782	0					47	17	4	0	0	0	0.70329	1	24993	24993		10.824	2.2306	1	36262000			1491	12796	932	946	1469	1469					-0.03683413207409103
AEPWPTNKFF	10	Unmodified	_AEPWPTNKFF_					0	0	0			REV__ENSG00000100129|ENST00000652021|EIF3L	REV__ENSG00000100129|ENST00000652021|EIF3L	MULTI-SECPEP	A375_MHC_IP_R1	1	413.5962829589844	3	412.873113	1235.59751	-0.061725	-2.5485E-05	-0.94043	-0.00038828	-1.0022	-0.00041376	412.8726270946775	23.457	0.30553	23.457	23.33	23.635	0					9	5	2	0	0	0	0.88918	1	6483	6483		7.9454	5.4469	1	3636500	+		1492	17052	933	947	1470	1470					-0.010865854939765995
AEPYGKIKNY	10	Unmodified	_AEPYGKIKNY_					0	0	0		ENSG00000015479|ENST00000394805|MATR3;nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF;ENST00000415279.1_1_1:106435599-106436040:+|nuORF	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MULTI-MSMS	A375_MHC_IP_R1	1	395.2763977050781	3	394.876634	1181.60807	0.01193	4.7108E-06	-0.18037	-7.1224E-05	-0.16844	-6.6513E-05	394.87653943650315	25.179	0.712	25.179	25.002	25.714	0					51	13	5	0	0	0	0.064809	2	7278	7278;7331		71.708	42.271	1	132280000			1493	1035	934	948	1471;1472	1471					0.024533971604796534
AEPYGKIKNY	10	Unmodified	_AEPYGKIKNY_					0	0	0		ENSG00000015479|ENST00000394805|MATR3;nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF;ENST00000415279.1_1_1:106435599-106436040:+|nuORF	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MULTI-MSMS	A375_MHC_IP_R1	1	592.2112426757812	2	591.811313	1181.60807	-0.31873	-0.00018863	-0.11571	-6.8479E-05	-0.43444	-0.00025711	591.811220542072	25.179	0.50851	25.179	25.002	25.511	0					30	9	4	0	0	0	0.0038974	1	7301	7301		125.04	81.265	1	43768000			1494	1035	934	948	1473	1473					0.024533971604796534
AEPYGKIKNY	10	Unmodified	_AEPYGKIKNY_					0	0	0		ENSG00000015479|ENST00000394805|MATR3;nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF;ENST00000415279.1_1_1:106435599-106436040:+|nuORF	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MULTI-MSMS	A375_MHC_IP_R2	2	395.2762451171875	3	394.876634	1181.60807	-0.52441	-0.00020708	-0.037347	-1.4747E-05	-0.56176	-0.00022182	394.8765678281291	24.737	0.86451	25.381	25.06	25.924	0.64368					56	16	6	0	0	0	0.10198	2	8105	8105;8123		63.227	33.79	1	97776000			1495	1035	934	948	1474;1475	1474					0.024533971604796534
AEPYGKIKNY	10	Unmodified	_AEPYGKIKNY_					0	0	0		ENSG00000015479|ENST00000394805|MATR3;nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF;ENST00000415279.1_1_1:106435599-106436040:+|nuORF	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MULTI-MSMS	A375_MHC_IP_R2	2	592.2105102539062	2	591.811313	1181.60807	-0.94204	-0.00055751	0.15608	9.2372E-05	-0.78596	-0.00046514	591.8113269247772	24.748	0.55882	25.392	25.06	25.619	0.64368					30	10	4	0	0	0	0.021084	1	8111	8111		107.1	67.15	1	31059000			1496	1035	934	948	1476	1476					0.024533971604796534
AEQALKHLKQY	11	Unmodified	_AEQALKHLKQY_					0	0	0		ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-MSMS	A375_MHC_IP_R1	1	443.9820861816406	3	443.582221	1327.72483	-0.010502	-4.6587E-06	-0.41638	-0.0001847	-0.42688	-0.00018936	443.58222475092634	20.257	0.35463	20.257	20.03	20.384	0					14	6	3	0	0	0	0.57887	1	5204	5204		24.957	0	1	1611800			1497	4773	935	949	1477	1477					0.07408135380228487
AEQAPGGL	8	Unmodified	_AEQAPGGL_					0	0	0		ENST00000541164.1_19:18553911-18554356:-|nuORF	ENST00000541164.1_19:18553911-18554356:-|nuORF	ENST00000541164.1_19:18553911-18554356:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	741.9739990234375	1	742.372995	741.365718	-0.40609	-0.00030147	0.03397	2.5219E-05	-0.37212	-0.00027625	742.3729700142546	37.581	0.46037	37.581	37.351	37.812	0					11	8	2	0	0	0	0.972	1	12587	12587		1.6526	0	1	2773100			1498	13282	936	950	1478	1478					-0.015310081248458118
AEQDFISKF	9	Unmodified	_AEQDFISKF_					0	0	0		nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000511971.5_1_4:56749994-56766742:+|nuORF;ENST00000504321.1_1_4:56755058-56759725:+|nuORF	nc|ENSG00000090989|Q9NV70-2|EXOC1	nc|ENSG00000090989|Q9NV70-2|EXOC1	MULTI-MSMS	A375_MHC_IP_R1	1	543.1692504882812	2	542.769114	1083.52368	-0.49739	-0.00026997	0.19802	0.00010748	-0.29938	-0.00016249	542.7691630068147	70.978	0.8176	70.978	70.648	71.465	0					41	15	4	0	0	0	0.0093675	1	25722	25722		105.35	57.596	1	45690000			1499	1966	937	951	1479	1479					-0.014745536562713824
AEQDFISKF	9	Unmodified	_AEQDFISKF_					0	0	0		nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000511971.5_1_4:56749994-56766742:+|nuORF;ENST00000504321.1_1_4:56755058-56759725:+|nuORF	nc|ENSG00000090989|Q9NV70-2|EXOC1	nc|ENSG00000090989|Q9NV70-2|EXOC1	MULTI-MSMS	A375_MHC_IP_R2	2	543.1686401367188	2	542.769114	1083.52368	-0.76771	-0.00041669	-0.33194	-0.00018017	-1.0997	-0.00059686	542.768949717556	70.211	0.86084	70.945	70.642	71.503	0.73421					46	16	4	0	0	0	0.0098272	1	26574	26574		115.06	61.226	1	32356000			1500	1966	937	951	1480	1480					-0.014745536562713824
AEQDFISKFF	10	Unmodified	_AEQDFISKFF_					0	0	0		nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000511971.5_1_4:56749994-56766742:+|nuORF;ENST00000504321.1_1_4:56755058-56759725:+|nuORF	nc|ENSG00000090989|Q9NV70-2|EXOC1	nc|ENSG00000090989|Q9NV70-2|EXOC1	MULTI-SECPEP	A375_MHC_IP_R1	1	616.7030029296875	2	616.303321	1230.59209	-0.34872	-0.00021492	0.11536	7.11E-05	-0.23336	-0.00014382	616.303269923598	118.94	0.55817	118.94	118.63	119.18	0					28	10	4	0	0	0	0.0023473	1	43839	43839		150.18	88.575	1	25714000			1501	1966	938	952	1481	1481					-0.01398309076444093
AEQDFISKFF	10	Unmodified	_AEQDFISKFF_					0	0	0		nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000511971.5_1_4:56749994-56766742:+|nuORF;ENST00000504321.1_1_4:56755058-56759725:+|nuORF	nc|ENSG00000090989|Q9NV70-2|EXOC1	nc|ENSG00000090989|Q9NV70-2|EXOC1	MULTI-MSMS	A375_MHC_IP_R2	2	616.7044067382812	2	616.303321	1230.59209	-0.52982	-0.00032653	0.33779	0.00020818	-0.19203	-0.00011835	616.3032464037153	118.06	0.55589	118.67	118.44	119	0.60909					25	10	3	0	0	0	0.0091722	1	44798	44798		128.87	63.396	1	27474000			1502	1966	938	952	1482	1482					-0.01398309076444093
AEQDLIREL	9	Unmodified	_AEQDLIREL_					0	0	0		ENSG00000125124|ENST00000245157|BBS2;ENST00000561951.5_1_16:56535647-56545169:-|nuORF;ENST00000561853.1_1_16:56536201-56536626:-|nuORF;ENST00000565781.5_1_16:56536201-56536402:-|nuORF	ENSG00000125124|ENST00000245157|BBS2	ENSG00000125124|ENST00000245157|BBS2	MULTI-SECPEP	A375_MHC_IP_R1	1	544.1929321289062	2	543.793121	1085.57169	-0.3636	-0.00019772	-3.429	-0.0018647	-3.7926	-0.0020624	543.7929058078126	71.64	1.722	71.64	71.108	72.83	0					108	33	6	0	0	0	0.0010099	1	26040	26040		169.92	70.168	1	128620000			1503	3942	939	953	1483	1483					0.032325202637593975
AEQDLIREL	9	Unmodified	_AEQDLIREL_					0	0	0		ENSG00000125124|ENST00000245157|BBS2;ENST00000561951.5_1_16:56535647-56545169:-|nuORF;ENST00000561853.1_1_16:56536201-56536626:-|nuORF;ENST00000565781.5_1_16:56536201-56536402:-|nuORF	ENSG00000125124|ENST00000245157|BBS2	ENSG00000125124|ENST00000245157|BBS2	MULTI-SECPEP	A375_MHC_IP_R2	2	543.1448974609375	2	543.793121	1085.57169	-0.90612	-0.00049274	-3.8412	-0.0020888	-4.7473	-0.0025816	543.7931159086713	70.895	1.4685	71.629	70.946	72.414	0.73421					114	28	7	0	0	0	0.046527	1	26946	26946		89.609	36.205	1	106210000			1504	3942	939	953	1484	1484					0.032325202637593975
AEQEIMKKV	9	Unmodified	_AEQEIMKKV_					0	0	0		nc|ENSG00000159217|Q9NZI8-2|IGF2BP1;ENSG00000159217|ENST00000290341|IGF2BP1	nc|ENSG00000159217|Q9NZI8-2|IGF2BP1	nc|ENSG00000159217|Q9NZI8-2|IGF2BP1	MULTI-SECPEP	A375_MHC_IP_R1	1	537.7008056640625	2	538.294442	1074.57433	-0.83517	-0.00044957	-0.071905	-3.8706E-05	-0.90708	-0.00048827	538.2943853587532	24.422	0.20156	24.422	24.296	24.498	0					5	3	2	0	0	0	0.63749	1	6921	6921		16.149	5.3252	1	2288200			1505	6360	940	954	1485	1485					0.040026523970709604
AEQEKHLLN	9	Unmodified	_AEQEKHLLN_					0	0	0		nc|nan|Q49A92-4|C8orf34	nc|nan|Q49A92-4|C8orf34	nc|nan|Q49A92-4|C8orf34	MSMS	A375_MHC_IP_R1	1	541.2018432617188	2	541.285463	1080.55637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.02	1	132.02	131.52	132.52	0								0	0	0	0.1521	1	50904	50904		18.146	1.0335	1				1506	14977	941	955	1486	1486					0.019316534665676954
AEQEVARLL	9	Unmodified	_AEQEVARLL_					0	0	0		ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	MULTI-SECPEP	A375_MHC_IP_R2	2	514.9246215820312	2	514.790381	1027.56621	-1.0322	-0.00053138	-0.012591	-6.4816E-06	-1.0448	-0.00053787	514.7904228863433	57.907	1.066	58.656	58.069	59.135	0.74894					52	20	4	0	0	0	0.30133	1	21751	21751		43.982	5.3671	1	19328000			1507	7039	942	956	1487	1487					0.05352841471949432
AEQFPRQVL	9	Unmodified	_AEQFPRQVL_					0	0	0		ENSG00000134717|ENST00000313334|BTF3L4;nc|ENSG00000134717|Q96K17-2|BTF3L4	ENSG00000134717|ENST00000313334|BTF3L4	ENSG00000134717|ENST00000313334|BTF3L4	MULTI-SECPEP	A375_MHC_IP_R1	1	544.6988525390625	2	544.298373	1086.58219	-0.45121	-0.00024559	-0.0032916	-1.7916E-06	-0.4545	-0.00024738	544.2982536013528	56.288	1.1663	56.288	55.79	56.956	0					50	22	3	0	0	0	0.11849	1	20124	20124		70.332	34.205	1	3983500			1508	4600	943	957	1488	1488					0.04236547708865146
AEQFPRQVL	9	Unmodified	_AEQFPRQVL_					0	0	0		ENSG00000134717|ENST00000313334|BTF3L4;nc|ENSG00000134717|Q96K17-2|BTF3L4	ENSG00000134717|ENST00000313334|BTF3L4	ENSG00000134717|ENST00000313334|BTF3L4	MULTI-SECPEP	A375_MHC_IP_R2	2	544.6981201171875	2	544.298373	1086.58219	-0.89935	-0.00048952	0.20075	0.00010927	-0.6986	-0.00038025	544.2985512072366	55.474	1.0178	56.225	55.779	56.797	0.75075					39	19	3	0	0	0	0.16595	1	20918	20918		61.602	36.203	1	5809000			1509	4600	943	957	1489	1489					0.04236547708865146
AEQHRQIEETL	11	Unmodified	_AEQHRQIEETL_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000494253.1_1_10:71098016-71144300:+|nuORF	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-MSMS	A375_MHC_IP_R2	2	452.2968444824219	3	451.896757	1352.66844	-0.53374	-0.00024119	0.49136	0.00022204	-0.042377	-1.915E-05	451.8971382135068	19.026	0.43188	19.629	19.452	19.884	0.60308					16	8	4	0	0	0	0.72656	1	5817	5817		7.0341	0.41066	1	6210200			1510	6196	944	958	1490	1490					0.006214627529061545
AEQIIFDHF	9	Unmodified	_AEQIIFDHF_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4;nc|ENSG00000068878|Q14997-3|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	A375_MHC_IP_R1	1	560.2135009765625	2	560.277106	1118.53966	-0.46021	-0.00025785	0.25321	0.00014187	-0.207	-0.00011598	560.2776043378117	89.401	0.55904	89.401	89.069	89.628	0					15	10	2	0	0	0	0.033557	1	32843	32843		71.922	37.521	1	3569300			1511	1468	945	959	1491	1491					-0.014868474193917791
AEQIIFDHF	9	Unmodified	_AEQIIFDHF_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4;nc|ENSG00000068878|Q14997-3|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-SECPEP	A375_MHC_IP_R2	2	560.6769409179688	2	560.277106	1118.53966	-0.57746	-0.00032354	1.6512	0.00092511	1.0737	0.00060157	560.2782682905158	88.736	0.76001	89.467	88.925	89.685	0.7318					19	14	2	0	0	0	0.04395	1	33752	33752		92.491	46.792	1	3574700			1512	1468	945	959	1492	1492					-0.014868474193917791
AEQIIQEIY	9	Unmodified	_AEQIIQEIY_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-SECPEP	A375_MHC_IP_R1	1	554.1793823242188	2	553.790047	1105.56554	-0.38128	-0.00021115	0.14003	7.7549E-05	-0.24125	-0.0001336	553.7900970771527	92.287	0.35319	92.287	92.11	92.463	0					10	6	2	0	0	0	0.4465	1	33960	33960		38.176	23.337	1	879150			1513	6745	946	960	1493	1493					0.01698002032230761
AEQLGSQHEQL	11	Unmodified	_AEQLGSQHEQL_					0	0	0			REV__ENST00000420757.1_1_1:240799967-240800270:-|nuORF	REV__ENST00000420757.1_1_1:240799967-240800270:-|nuORF	MSMS	A375_MHC_IP_R1	1	620.1981811523438	2	620.301841	1238.58913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.326	1	69.326	68.826	69.826	0								0	0	0	0.14829	1	25155	25155		21.59	3.4438	1		+		1514	24574	947	961	1494	1494					-0.020621842012360503
AEQMPQHTL	9	Oxidation (M)	_AEQM(Oxidation (M))PQHTL_		AEQM(1)PQHTL		AEQM(62)PQHTL	0	0	1		ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENST00000562791.1_1_16:53256571-53257415:+|nuORF	ENSG00000177200|ENST00000447540|CHD9	ENSG00000177200|ENST00000447540|CHD9	MULTI-SECPEP	A375_MHC_IP_R1	1	536.150390625	2	535.750398	1069.48624	-0.39811	-0.00021329	0.33973	0.00018201	-0.058379	-3.1277E-05	535.7505354142946	22.636	0.85865	22.636	22.419	23.278	0					26	16	2	0	0	0	0.16595	1	6090	6090		61.602	11.669	1	3593800			1515	8069	948	962	1495	1495		395			-0.04571968193545217
AEQMPQHTL	9	Oxidation (M)	_AEQM(Oxidation (M))PQHTL_		AEQM(1)PQHTL		AEQM(70)PQHTL	0	0	1		ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENST00000562791.1_1_16:53256571-53257415:+|nuORF	ENSG00000177200|ENST00000447540|CHD9	ENSG00000177200|ENST00000447540|CHD9	MULTI-SECPEP	A375_MHC_IP_R2	2	536.1498413085938	2	535.750398	1069.48624	-1.1865	-0.00063565	0.29228	0.00015659	-0.89418	-0.00047906	535.7504946465908	22.541	1.1737	23.171	22.603	23.777	0.63014					34	22	2	0	0	0	0.074405	1	7048	7048		70.332	20.399	1	3286600			1516	8069	948	962	1496	1496		395			-0.04571968193545217
AEQPPFPEGY	10	Unmodified	_AEQPPFPEGY_					0	0	0		ENST00000566312.1_1_16:19729742-19745154:+|nuORF;nc|ENSG00000174628|Q8N0W5-2|IQCK;nc|ENSG00000174628|Q8N0W5-3|IQCK;ENST00000564515.5_1_16:19729628-19746934:+|nuORF;ENSG00000174628|ENST00000695302|IQCK	ENST00000566312.1_1_16:19729742-19745154:+|nuORF	ENST00000566312.1_1_16:19729742-19745154:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	568.6607055664062	2	567.758746	1133.50294	-0.38639	-0.00021938	0.47595	0.00027023	0.089563	5.085E-05	567.7588275865592	76.001	1.0078	76.001	75.514	76.522	0					37	19	3	0	0	0	0.44858	1	27681	27681		31.268	19.628	1	3802500			1517	7893	949	963	1497	1497					-0.0584714403594262
AEQPPFPEGY	10	Unmodified	_AEQPPFPEGY_					0	0	0		ENST00000566312.1_1_16:19729742-19745154:+|nuORF;nc|ENSG00000174628|Q8N0W5-2|IQCK;nc|ENSG00000174628|Q8N0W5-3|IQCK;ENST00000564515.5_1_16:19729628-19746934:+|nuORF;ENSG00000174628|ENST00000695302|IQCK	ENST00000566312.1_1_16:19729742-19745154:+|nuORF	ENST00000566312.1_1_16:19729742-19745154:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	568.1583251953125	2	567.758746	1133.50294	-0.39577	-0.0002247	-0.20347	-0.00011552	-0.59924	-0.00034022	567.758434937459	75.408	1.0166	76.149	75.573	76.589	0.74052					34	19	2	0	0	0	0.064809	1	28714	28714		71.708	37.306	1	3710500			1518	7893	949	963	1498	1498					-0.0584714403594262
AEQPSGFTF	9	Unmodified	_AEQPSGFTF_					0	0	0		nc|ENSG00000198000|Q76FK4-4|NOL8;ENSG00000198000|ENST00000442668|NOL8;nc|ENSG00000198000|Q76FK4-2|NOL8	nc|ENSG00000198000|Q76FK4-4|NOL8	nc|ENSG00000198000|Q76FK4-4|NOL8	MULTI-SECPEP	A375_MHC_IP_R1	1	492.6266784667969	2	492.227082	982.439611	-0.40734	-0.00020051	0.023181	1.141E-05	-0.38416	-0.0001891	492.22703303128833	83.677	1.0154	83.677	83.226	84.241	0					53	19	4	0	0	0	0.14572	1	30563	30563		62.573	6.3957	1	12289000			1519	9219	950	964	1499	1499					-0.05231084753177129
AEQPSGFTF	9	Unmodified	_AEQPSGFTF_					0	0	0		nc|ENSG00000198000|Q76FK4-4|NOL8;ENSG00000198000|ENST00000442668|NOL8;nc|ENSG00000198000|Q76FK4-2|NOL8	nc|ENSG00000198000|Q76FK4-4|NOL8	nc|ENSG00000198000|Q76FK4-4|NOL8	MULTI-SECPEP	A375_MHC_IP_R1	1	982.8722534179688	1	983.446888	982.439611	0.097314	9.5703E-05	-0.14743	-0.00014499	-0.050118	-4.9288E-05	983.4466524839803	83.673	0.81191	83.673	83.329	84.141	0					40	15	4	0	0	0	0.01147	1	30687	30687		110.55	72.579	1	18200000			1520	9219	950	964	1500	1500					-0.05231084753177129
AEQPSGFTF	9	Unmodified	_AEQPSGFTF_					0	0	0		nc|ENSG00000198000|Q76FK4-4|NOL8;ENSG00000198000|ENST00000442668|NOL8;nc|ENSG00000198000|Q76FK4-2|NOL8	nc|ENSG00000198000|Q76FK4-4|NOL8	nc|ENSG00000198000|Q76FK4-4|NOL8	MULTI-MSMS	A375_MHC_IP_R2	2	492.62664794921875	2	492.227082	982.439611	-0.50959	-0.00025083	-0.34015	-0.00016743	-0.84974	-0.00041827	492.22692084379014	82.923	0.96039	83.663	83.242	84.203	0.73962					57	18	4	0	0	0	0.029064	2	31431	31374;31431		75.761	19.584	1	14280000			1521	9219	950	964	1501;1502	1502					-0.05231084753177129
AEQPSGFTF	9	Unmodified	_AEQPSGFTF_					0	0	0		nc|ENSG00000198000|Q76FK4-4|NOL8;ENSG00000198000|ENST00000442668|NOL8;nc|ENSG00000198000|Q76FK4-2|NOL8	nc|ENSG00000198000|Q76FK4-4|NOL8	nc|ENSG00000198000|Q76FK4-4|NOL8	MULTI-SECPEP	A375_MHC_IP_R2	2	982.8710327148438	1	983.446888	982.439611	0.00302	2.97E-06	-0.40912	-0.00040235	-0.4061	-0.00039938	983.4463585131468	82.972	0.75494	83.711	83.294	84.049	0.73962					39	14	4	0	0	0	0.025037	1	31574	31574		80.676	42.702	1	17562000			1522	9219	950	964	1503	1503					-0.05231084753177129
AEQQAALLL	9	Unmodified	_AEQQAALLL_					0	0	0		ENSG00000152382|ENST00000367874|TADA1	ENSG00000152382|ENST00000367874|TADA1	ENSG00000152382|ENST00000367874|TADA1	MULTI-SECPEP	A375_MHC_IP_R1	1	479.1734619140625	2	478.7742	955.533846	-0.70998	-0.00033992	-0.12528	-5.9983E-05	-0.83527	-0.0003999	478.77406724156475	90.837	0.55966	90.837	90.539	91.098	0					16	10	2	0	0	0	0.24324	1	33418	33418		45.7	0	1	1427200			1523	5961	951	965	1504	1504					0.054300540689382615
AEQQAALLL	9	Unmodified	_AEQQAALLL_					0	0	0		ENSG00000152382|ENST00000367874|TADA1	ENSG00000152382|ENST00000367874|TADA1	ENSG00000152382|ENST00000367874|TADA1	MULTI-MSMS	A375_MHC_IP_R2	2	479.17401123046875	2	478.7742	955.533846	-0.45578	-0.00021822	0.077558	3.7133E-05	-0.37823	-0.00018109	478.7742145812429	89.891	0.61438	90.623	90.287	90.902	0.7318					16	11	2	0	0	0	0.032333	1	34218	34218		72.968	17.465	1	2147600			1524	5961	951	965	1505	1505					0.054300540689382615
AEQRNKDER	9	Unmodified	_AEQRNKDER_					0	0	0		tr|U7SSH1|U7SSH1_FUSNURloB-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01266PE=4SV=1	tr|U7SSH1|U7SSH1_FUSNURloB-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01266PE=4SV=1	tr|U7SSH1|U7SSH1_FUSNURloB-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01266PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	382.29595947265625	3	382.526776	1144.5585	0.24238	9.2715E-05	-0.066249	-2.5342E-05	0.17613	6.7373E-05	382.5267242074662	28.268	1.5174	28.268	27.735	29.252	0					88	29	6	0	0	0	0.73008	1	9033	9033		5.4027	5.4027	1	229640000			1525	29634	952	966	1506	1506					-0.007999177956207859
AEQSAQLEQIK	11	Unmodified	_AEQSAQLEQIK_					0	0	0			REV__nc|ENSG00000002822|Q9Y6D9-3|MAD1L1	REV__nc|ENSG00000002822|Q9Y6D9-3|MAD1L1	MSMS	A375_MHC_IP_R2	2	415.5811462402344	3	415.55422	1243.64083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.877	1	25.521	25.021	26.021	0.64368								0	0	0	0.16209	1	8246	8246		7.846	1.6542	1		+		1526	16090	953	967	1507	1507					0.028755594926451522
AEQSWDSPL	9	Unmodified	_AEQSWDSPL_					0	0	0			REV__CON__Q2HJF0	REV__CON__Q2HJF0	MSMS	A375_MHC_IP_R1	1	516.69775390625	2	516.735271	1031.45599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.546	1	54.546	54.046	55.046	0								0	0	0	0.15486	1	19481	19481		7.9102	0	1		+	+	1527	15878	954	968	1508	1508					-0.05848003587107087
AEQTLNNIKQF	11	Unmodified	_AEQTLNNIKQF_					0	0	0		nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-2|DDX1;DDX1|p.N389Rfs*14|1|0.04|ENSG00000079785|chr2:15618228-15618231|CAAT/-|frameshift_variant	nc|ENSG00000079785|Q92499-3|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	MULTI-SECPEP	A375_MHC_IP_R1	1	653.6925048828125	2	653.343509	1304.67246	-0.28301	-0.00018491	-0.47126	-0.0003079	-0.75428	-0.0004928	653.3431180711913	51.366	0.25626	51.366	51.219	51.475	0					7	4	2	0	0	0	0.44636	1	18235	18235		46.022	28.58	1	973070			1528	1702	955	969	1509	1509					0.0323155224657512
AEQVRLVG	8	Unmodified	_AEQVRLVG_					0	0	0			REV__ENST00000360383.7_2_13:115000400-115000520:+|nuORF	REV__ENST00000360383.7_2_13:115000400-115000520:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	436.6533203125	2	436.253434	870.492316	0.088927	3.8795E-05	0.18166	7.925E-05	0.27059	0.00011805	436.25347859194954	43.052	0.45872	43.052	42.79	43.249	0					12	8	2	0	0	0	0.87643	1	14967	14967		25.399	0	1	1929500	+		1529	23890	956	970	1510	1510					0.051889181002820806
AEQYTPKAKY	10	Unmodified	_AEQYTPKAKY_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	A375_MHC_IP_R1	1	400.94287109375	3	400.208273	1197.60299	-0.25159	-0.00010069	0.87907	0.00035181	0.62748	0.00025112	400.2086351507828	20.098	0.7617	20.098	19.623	20.384	0					25	14	2	0	0	0	0.58856	1	5106	5106		24.957	21.885	1	2732800			1530	7431	957	971	1511	1511					0.012090932978253477
AERDEYGSY	9	Unmodified	_AERDEYGSY_					0	0	0		ENSG00000009413|ENST00000368802|REV3L;nc|ENSG00000009413|O60673-2|REV3L;ENST00000492520.1_1_6:111670345-111672897:-|nuORF	ENSG00000009413|ENST00000368802|REV3L	ENSG00000009413|ENST00000368802|REV3L	MULTI-MSMS	A375_MHC_IP_R1	1	545.6275634765625	2	545.22781	1088.44107	-0.72061	-0.0003929	0.08383	4.5706E-05	-0.63678	-0.00034719	545.2276422245745	27.053	0.45181	27.053	26.828	27.28	0					14	8	2	0	0	0	0.63811	1	8186	8186		12.532	0.29089	1	3726100			1531	968	958	972	1512	1512					-0.09961495455081604
AERDLYRDTW	10	Unmodified	_AERDLYRDTW_					0	0	0		nc|ENSG00000242114|Q9UDX5-2|MTFP1;ENSG00000242114|ENST00000266263|MTFP1	nc|ENSG00000242114|Q9UDX5-2|MTFP1	nc|ENSG00000242114|Q9UDX5-2|MTFP1	MULTI-MSMS	A375_MHC_IP_R1	1	442.8993835449219	3	442.214198	1323.62076	0.044317	1.9598E-05	0.093779	4.147E-05	0.1381	6.1068E-05	442.2140043696159	43.416	0.56009	43.416	43.043	43.603	0					31	10	4	0	0	0	0.53895	3	15080	15044;15080;15129		25.438	22.486	1	2854800			1532	14914	959	973	1513;1514;1515	1514					-0.028101914472927092
AERDLYRDTW	10	Unmodified	_AERDLYRDTW_					0	0	0		nc|ENSG00000242114|Q9UDX5-2|MTFP1;ENSG00000242114|ENST00000266263|MTFP1	nc|ENSG00000242114|Q9UDX5-2|MTFP1	nc|ENSG00000242114|Q9UDX5-2|MTFP1	MULTI-MSMS	A375_MHC_IP_R2	2	442.947998046875	3	442.214198	1323.62076	-0.28224	-0.00012481	0.016727	7.3971E-06	-0.26552	-0.00011742	442.21416173656377	42.635	0.76347	43.408	42.91	43.674	0.7724					31	14	4	0	0	0	0.47962	1	15870	15870		29.419	29.419	1	3827900			1533	14914	959	973	1516	1516					-0.028101914472927092
AEREGSKKY	9	Unmodified	_AEREGSKKY_					0	0	0		ENPEP|p.R11K|1|0.15|ENSG00000138792|chr4:110476446-110476446|G/A|missense_variant	ENPEP|p.R11K|1|0.15|ENSG00000138792|chr4:110476446-110476446|G/A|missense_variant	ENPEP|p.R11K|1|0.15|ENSG00000138792|chr4:110476446-110476446|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	357.2500305175781	3	356.520851	1066.54072	-0.089247	-3.1819E-05	3.8925	0.0013878	3.8032	0.0013559	356.52279604043224	33.09	0.2516	33.09	32.989	33.241	0					6	4	2	0	0	0	0.60917	1	10801	10801		13.615	2.8154	1	977940			1534	837	960	974	1517	1517					0.010113669495467548
AEREQVTV	8	Unmodified	_AEREQVTV_					0	0	0			REV__ENSG00000140259|ENST00000267812|MFAP1	REV__ENSG00000140259|ENST00000267812|MFAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	466.1372985839844	2	466.245806	930.47706	-0.55207	-0.0002574	0.59347	0.0002767	0.041392	1.9299E-05	466.2459977232877	43.045	0.30275	43.817	43.623	43.926	0.7724					7	5	2	0	0	0	0.69122	1	15989	15989		25.399	0	1	946480	+		1535	19197	961	975	1518	1518					0.009040065124281682
AERFRRPCL	9	Unmodified	_AERFRRPCL_					0	0	0			REV__ENSG00000171443|ENST00000301073|ZNF524	REV__ENSG00000171443|ENST00000301073|ZNF524	MULTI-MSMS	A375_MHC_IP_R2	2	383.5647277832031	3	383.209953	1146.60803	-0.30177	-0.00011564	-0.39329	-0.00015071	-0.69506	-0.00026635	383.209755523562	97.13	0.91385	97.885	97.569	98.483	0.75586					51	17	4	0	0	0	0.72985	1	36958	36958		2.4985	1.427	1	22455000	+		1536	21063	962	976	1519	1519					0.040591186794927125
AERGEKQLEF	10	Unmodified	_AERGEKQLEF_					0	0	0			REV__ENSG00000083457|ENST00000263087|ITGAE	REV__ENSG00000083457|ENST00000263087|ITGAE	MULTI-SECPEP	A375_MHC_IP_R1	1	403.275146484375	3	402.875293	1205.60405	-0.36352	-0.00014645	0.51115	0.00020593	0.14763	5.9478E-05	402.87559911361905	40.787	0.35387	40.787	40.559	40.913	0					11	6	2	0	0	0	0.94044	1	14078	14078		0.13989	0	1	2219200	+		1537	16805	963	977	1520	1520					0.009473076667518399
AERGHVTRSA	10	Unmodified	_AERGHVTRSA_					0	0	0		ENST00000605386.1_1_12:90103120-90103246:+|nuORF	ENST00000605386.1_1_12:90103120-90103246:+|nuORF	ENST00000605386.1_1_12:90103120-90103246:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	362.2730712890625	3	361.859978	1082.5581	-0.44207	-0.00015997	-1.7874	-0.00064677	-2.2294	-0.00080674	361.85966231265485	19.038	0.29975	19.641	19.483	19.783	0.60308					7	5	2	0	0	0	0.88918	1	5803	5803		5.0475	0.85802	1	899760			1538	13907	964	978	1521	1521					0.020127072751847663
AERHRKEQVE	10	Unmodified	_AERHRKEQVE_					0	0	0			REV__ENSG00000189280|ENST00000338513|GJB5	REV__ENSG00000189280|ENST00000338513|GJB5	MULTI-SECPEP	A375_MHC_IP_R1	1	427.974853515625	3	427.893459	1280.65855	-0.40726	-0.00017426	3.1703	0.0013566	2.7631	0.0011823	427.89415788695635	23.762	0.25386	23.762	23.635	23.889	0					6	4	2	0	0	0	0.93711	1	6600	6600		9.2438	4.0453	1	1159500	+		1539	22147	965	979	1522	1522					0.029443195381645637
AERLENVL	8	Unmodified	_AERLENVL_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;ENST00000470611.5_1_1:11136930-11139812:-|nuORF;ENST00000498576.1_1_1:11137245-11137690:-|nuORF	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	A375_MHC_IP_R1	1	472.1896057128906	2	472.263999	942.513445	-0.59608	-0.00028151	0.027906	1.3179E-05	-0.56818	-0.00026833	472.264046641465	32.353	2.1297	32.353	31.973	34.103	0					123	41	6	0	0	0	0.75801	1	10921	10921		18.146	0	1	628770000			1540	7646	966	980	1523	1523					0.03988883409135724
AERNQLIQRL	10	Unmodified	_AERNQLIQRL_					0	0	0		ENSG00000189221|ENST00000338702|MAOA;nc|ENSG00000189221|P21397-2|MAOA	ENSG00000189221|ENST00000338702|MAOA	ENSG00000189221|ENST00000338702|MAOA	MULTI-MSMS	A375_MHC_IP_R2	2	414.2911376953125	3	414.242199	1239.70477	-0.027112	-1.1231E-05	-0.45241	-0.00018741	-0.47952	-0.00019864	414.24193105865413	31.271	0.35764	31.989	31.719	32.077	0.71857					10	6	2	0	0	0	0.68638	1	10976	10976		9.2438	0.95734	1	1178500			1541	8971	967	981	1524	1524					0.09450384440265225
AERNWDTWY	9	Unmodified	_AERNWDTWY_					0	0	0			REV__ENSG00000087303|ENST00000216286|NID2	REV__ENSG00000087303|ENST00000216286|NID2	MULTI-SECPEP	A375_MHC_IP_R2	2	414.30328369140625	3	414.184238	1239.53089	-0.34254	-0.00014188	-1.0286	-0.00042604	-1.3712	-0.00056792	414.5179411296496	22.79	0.45954	23.42	23.215	23.675	0.63015					11	8	2	0	0	0	0.80005	1	7239	7239		2.7352	2.5953	1	880670	+		1542	16873	968	982	1525	1525					-0.07929821055859065
AERNYLNV	8	Unmodified	_AERNYLNV_					0	0	0		ENSG00000047621|ENST00000261250|C12orf4	ENSG00000047621|ENST00000261250|C12orf4	ENSG00000047621|ENST00000261250|C12orf4	MULTI-SECPEP	A375_MHC_IP_R1	1	490.1535339355469	2	489.753798	977.493044	-0.15115	-7.4029E-05	-0.28327	-0.00013873	-0.43443	-0.00021276	489.7535893697328	54.34	0.75893	54.34	54.063	54.822	0					40	14	4	0	0	0	0.30564	1	19359	19359		64.236	10.404	1	28937000			1543	1203	969	983	1526	1526					0.0033971274932582674
AERNYLNV	8	Unmodified	_AERNYLNV_					0	0	0		ENSG00000047621|ENST00000261250|C12orf4	ENSG00000047621|ENST00000261250|C12orf4	ENSG00000047621|ENST00000261250|C12orf4	MULTI-MSMS	A375_MHC_IP_R2	2	490.15362548828125	2	489.753798	977.493044	-1.0781	-0.00052802	0.17611	8.6253E-05	-0.90202	-0.00044177	489.7538615035132	53.515	0.76881	54.266	53.944	54.712	0.75105					41	14	4	0	0	0	0.1699	1	20164	20164		71.134	13.662	1	27545000			1544	1203	969	983	1527	1527					0.0033971274932582674
AERPEQPSY	9	Unmodified	_AERPEQPSY_					0	0	0			REV__ENST00000534598.5_1_11:124748127-124748211:+|nuORF	REV__ENST00000534598.5_1_11:124748127-124748211:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	538.6983032226562	2	538.753995	1075.49344	-1.123	-0.00060501	-0.10583	-5.7016E-05	-1.2288	-0.00066202	538.7543115012202	61.723	1.5169	62.467	61.818	63.335	0.74409					42	29	3	0	0	0	0.69674	1	23592	23592		7.2892	0	1	2060700	+		1545	25889	970	984	1528	1528					-0.041289123214710344
AERRDCKDYV	10	Unmodified	_AERRDCKDYV_					0	0	0		ENSG00000116213|ENST00000270708|WRAP73;ENST00000471223.1_1_1:3553438-3555449:-|nuORF	ENSG00000116213|ENST00000270708|WRAP73	ENSG00000116213|ENST00000270708|WRAP73	MULTI-SECPEP	A375_MHC_IP_R1	1	418.3004150390625	3	418.868033	1253.58227	0.21607	9.0506E-05	-0.54332	-0.00022758	-0.32725	-0.00013707	419.2020037576845	43.527	0.25429	43.527	43.4	43.655	0					7	4	2	0	0	0	0.93615	1	15154	15154		1.9064	0.57673	1	736370			1546	3386	971	985	1529	1529					-0.03437820353474308
AERREPPSL	9	Unmodified	_AERREPPSL_					0	0	0		ENSG00000165804|ENST00000360947|ZNF219	ENSG00000165804|ENST00000360947|ZNF219	ENSG00000165804|ENST00000360947|ZNF219	MULTI-SECPEP	A375_MHC_IP_R2	2	528.1851196289062	2	527.78563	1053.55671	-0.84605	-0.00044653	-0.43709	-0.00023069	-1.2831	-0.00067723	527.7854972402399	22.666	1.0716	23.296	22.5	23.572	0.63015					41	20	3	0	0	0	0.76827	1	7132	7132		6.7232	0	1	7161000			1547	6992	972	986	1530	1530					0.03207073186422349
AERSCCCSC	9	Unmodified	_AERSCCCSC_					0	0	0			REV__ENST00000337929.7_1_16:27413854-27448831:+|nuORF	REV__ENST00000337929.7_1_16:27413854-27448831:+|nuORF	MSMS	A375_MHC_IP_R2	2	481.16094970703125	2	481.153365	960.292177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.814	1	21.425	20.925	21.925	0.61029								0	0	0	0.15486	1	6509	6509		2.0598	0	1		+		1548	23696	973	987	1531	1531					-0.18955707217162399
AERSFPAEN	9	Unmodified	_AERSFPAEN_					0	0	0			REV__ENSG00000134755|ENST00000280904|DSC2	REV__ENSG00000134755|ENST00000280904|DSC2	MULTI-MSMS	A375_MHC_IP_R2	2	510.9266052246094	2	510.740888	1019.46722	-1.1164	-0.00057019	0.14625	7.4695E-05	-0.97014	-0.00049549	510.7408416464767	24.657	0.50789	25.3	25.06	25.568	0.64368					17	9	2	0	0	0	0.51106	1	8018	8018		19.257	5.7491	1	4691300	+		1549	18797	974	988	1532	1532					-0.04173181492956246
AERSGPIK	8	Unmodified	_AERSGPIK_					0	0	0			REV__JSRP1|p.E209K|1|0.19|ENSG00000167476|chr19:2252700-2252700|C/T|missense_variant	REV__JSRP1|p.E209K|1|0.19|ENSG00000167476|chr19:2252700-2252700|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	429.2909240722656	2	429.245609	856.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.045	1	23.675	23.175	24.175	0.63014								0	0	0	0.16876	1	7365	7365		4.756	0	1		+		1550	20761	975	989	1533	1533					0.04268631583227034
AERSIEEVYY	10	Unmodified	_AERSIEEVYY_					0	0	0		nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK;ENST00000510927.5_1_4:106967729-107168455:-|nuORF;nc|ENSG00000145348|Q8TEA7-3|TBCK	nc|ENSG00000145348|Q8TEA7-2|TBCK	nc|ENSG00000145348|Q8TEA7-2|TBCK	MULTI-SECPEP	A375_MHC_IP_R2	2	630.3665771484375	2	629.801143	1257.58773	-0.76258	-0.00048027	-2.6463	-0.0016667	-3.4089	-0.0021469	629.7994455850502	70.456	0.30527	71.19	70.946	71.251	0.73421					6	5	2	0	0	0	0.93615	1	26640	26640		3.9444	1.6417	1	1032400			1551	5553	976	990	1534	1534					-0.030758182899944586
AERSIEEVYY	10	Unmodified	_AERSIEEVYY_					0	0	0		nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK;ENST00000510927.5_1_4:106967729-107168455:-|nuORF;nc|ENSG00000145348|Q8TEA7-3|TBCK	nc|ENSG00000145348|Q8TEA7-2|TBCK	nc|ENSG00000145348|Q8TEA7-2|TBCK	MULTI-MATCH	A375_MHC_IP_R1	1		2	629.801143	1257.58773	-0.52113	-0.00032821	0.19926	0.00012549	-0.32188	-0.00020272	630.302924800301	71.01	0.25749	71.01	70.85	71.108	0	-0.090131	0.0011335	NaN	3.9444	11	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	885220			1552	5553	976	990							-0.030758182899944586
AERTAEAEAAM	11	Unmodified	_AERTAEAEAAM_					0	0	0			REV__nc|ENSG00000133115|Q8TAV4-2|STOML3	REV__nc|ENSG00000133115|Q8TAV4-2|STOML3	MULTI-MSMS	A375_MHC_IP_R2	2	575.725341796875	2	575.26387	1148.51319	-0.26833	-0.00015436	-2.3086	-0.001328	-2.5769	-0.0014824	575.2629748875527	27.064	0.71555	27.742	27.331	28.047	0.67857					17	13	2	0	0	0	0.72583	1	9227	9227		12.873	0.63195	1	1819100	+		1553	18706	977	991	1535	1535					-0.05512904373040328
AERTYHLCEVL	11	Unmodified	_AERTYHLCEVL_					0	0	0		nc|ENSG00000172554|Q9NY99-2|SNTG2;ENSG00000172554|ENST00000308624|SNTG2	nc|ENSG00000172554|Q9NY99-2|SNTG2	nc|ENSG00000172554|Q9NY99-2|SNTG2	MULTI-SECPEP	A375_MHC_IP_R1	1	445.6502380371094	3	445.223817	1332.64962	0.091896	4.0914E-05	-0.24625	-0.00010963	-0.15435	-6.872E-05	445.5576584958569	35.365	0.61199	35.365	35.013	35.625	0					24	11	4	0	0	0	0.99681	1	11803	11803		2.4348	1.325	1	1765000			1554	7722	978	992	1536	1536					-0.0033979014251599438
AERWKDTWDRV	11	Unmodified	_AERWKDTWDRV_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-MSMS	A375_MHC_IP_R1	1	366.0771484375	4	366.186292	1460.71606	0.090165	3.3017E-05	1.7468	0.00063967	1.837	0.00067269	366.4378806719304	19.464	0.25331	19.464	19.318	19.571	0					9	4	3	0	0	0	0.73647	1	4781	4781		1.1098	0	1	1313900			1555	2143	979	993	1537	1537					0.004131617437224122
AERWRFAF	8	Unmodified	_AERWRFAF_					0	0	0			REV__ENST00000488315.5_1_7:149570449-149570881:-|nuORF	REV__ENST00000488315.5_1_7:149570449-149570881:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	541.1402587890625	2	541.780151	1081.54575	-0.91804	-0.00049738	1.3399	0.0007259	0.42181	0.00022853	541.7805616616101	26.742	0.45328	26.742	26.524	26.978	0					13	8	2	0	0	0	0.92636	1	7941	7941		16.942	0	1	1336100	+		1556	25348	980	994	1538	1538					0.00823715602791708
AESAFKDI	8	Unmodified	_AESAFKDI_					0	0	0		tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1	tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1	tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	441.1241149902344	2	440.724175	879.433798	0.073953	3.2593E-05	-0.27455	-0.000121	-0.2006	-8.8407E-05	440.7240287816126	47.895	0.40243	47.895	47.618	48.02	0					14	7	2	0	0	0	0.68907	1	16881	16881		38.151	5.8457	1	2050700			1557	29868	981	995	1539	1539					-0.010741832648591298
AESALQLLYT	10	Unmodified	_AESALQLLYT_					0	0	0		nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	MULTI-SECPEP	A375_MHC_IP_R1	1	555.1873779296875	2	554.797872	1107.58119	-0.091493	-5.076E-05	0.61929	0.00034358	0.5278	0.00029282	554.7980912204732	114.86	0.85983	114.86	114.41	115.27	0					20	16	2	0	0	0	0.328	1	42016	42016		49.554	19.714	1	1687400			1558	4857	982	996	1540	1540					0.031702885492677524
AESAPAWRL	9	Unmodified	_AESAPAWRL_					0	0	0		nc|ENSG00000071994|Q16342-3|PDCD2;ENSG00000071994|ENST00000541970|PDCD2;nc|ENSG00000071994|Q16342-5|PDCD2;nc|ENSG00000071994|Q16342-2|PDCD2;nc|ENSG00000071994|Q16342-4|PDCD2;ENST00000544336.5_2_6:170892694-170893702:-|nuORF	nc|ENSG00000071994|Q16342-3|PDCD2	nc|ENSG00000071994|Q16342-3|PDCD2	MULTI-SECPEP	A375_MHC_IP_R1	1	501.1639404296875	2	500.764166	999.513779	-0.41735	-0.000209	-0.13512	-6.7661E-05	-0.55247	-0.00027666	500.76401481809694	61.145	0.61132	61.145	60.77	61.382	0					28	11	3	0	0	0	0.05021	1	21994	21994		88.954	45.096	1	9499000			1559	1524	983	997	1541	1541					0.01400303128991709
AESAPAWRL	9	Unmodified	_AESAPAWRL_					0	0	0		nc|ENSG00000071994|Q16342-3|PDCD2;ENSG00000071994|ENST00000541970|PDCD2;nc|ENSG00000071994|Q16342-5|PDCD2;nc|ENSG00000071994|Q16342-2|PDCD2;nc|ENSG00000071994|Q16342-4|PDCD2;ENST00000544336.5_2_6:170892694-170893702:-|nuORF	nc|ENSG00000071994|Q16342-3|PDCD2	nc|ENSG00000071994|Q16342-3|PDCD2	MULTI-SECPEP	A375_MHC_IP_R2	2	501.16363525390625	2	500.764166	999.513779	-0.90523	-0.00045331	0.18731	9.38E-05	-0.71791	-0.00035951	500.76415040737896	60.236	0.66239	60.981	60.651	61.314	0.74503					28	12	3	0	0	0	0.083712	1	22762	22762		74.929	31.071	1	12707000			1560	1524	983	997	1542	1542					0.01400303128991709
AESARNDP	8	Unmodified	_AESARNDP_					0	0	0			REV__nc|ENSG00000136536|Q9H992-2|MARCHF7	REV__nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	A375_MHC_IP_R1	1	430.5985107421875	2	430.198856	858.383159	-0.10584	-4.5531E-05	-0.41909	-0.00018029	-0.52493	-0.00022582	430.1986714756185	37.671	0.6641	37.671	37.351	38.016	0					26	12	3	0	0	0	0.77702	1	12689	12689		5.7604	0	1	5499600	+		1561	18946	984	998	1543	1543					-0.051697125898613194
AESATALGW	9	Unmodified	_AESATALGW_					0	0	0		ENST00000419807.5_3_2:44396152-44396269:+|nuORF	ENST00000419807.5_3_2:44396152-44396269:+|nuORF	ENST00000419807.5_3_2:44396152-44396269:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	904.89453125	1	905.436323	904.429047	0.0087236	7.8987E-06	0.46254	0.0004188	0.47126	0.0004267	905.436777165427	78.958	0.5587	78.958	78.707	79.265	0					12	10	2	0	0	0	0.05755	1	28823	28823		71.134	32.982	1	1504300			1562	11720	985	999	1544	1544					-0.02699067407615985
AESAVEELMP	10	Unmodified	_AESAVEELMP_					0	0	0		nc|ENSG00000092208|O14893-4|GEMIN2;ENST00000525430.1_1_14:39583533-39591807:+|nuORF;nc|ENSG00000092208|O14893-3|GEMIN2;nc|ENSG00000092208|O14893-2|GEMIN2;ENSG00000092208|ENST00000308317|GEMIN2;nc|ENSG00000092208|O14893|GEMIN2	nc|ENSG00000092208|O14893-4|GEMIN2	nc|ENSG00000092208|O14893-4|GEMIN2	MULTI-MSMS	A375_MHC_IP_R2	2	359.5707702636719	3	359.170719	1074.49033	-0.11501	-4.1307E-05	0.64201	0.00023059	0.527	0.00018928	359.1708278587961	48.136	0.50219	48.897	48.632	49.134	0.76127					19	9	3	0	0	0	0.62155	1	18106	18106		12.175	0.65687	1	1997600			1563	2002	986	1000	1545	1545					-0.04393923490488305
AESAVEELMP	10	Unmodified	_AESAVEELMP_					0	0	0		nc|ENSG00000092208|O14893-4|GEMIN2;ENST00000525430.1_1_14:39583533-39591807:+|nuORF;nc|ENSG00000092208|O14893-3|GEMIN2;nc|ENSG00000092208|O14893-2|GEMIN2;ENSG00000092208|ENST00000308317|GEMIN2;nc|ENSG00000092208|O14893|GEMIN2	nc|ENSG00000092208|O14893-4|GEMIN2	nc|ENSG00000092208|O14893-4|GEMIN2	MULTI-MATCH	A375_MHC_IP_R1	1		3	359.170719	1074.49033	0.57918	0.00020802	0.037893	1.361E-05	0.61707	0.00022163	359.17065592389986	48.856	0.45534	48.856	48.629	49.084	0	-0.02055	-0.00025113	NaN	12.175	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1659900			1564	2002	986	1000							-0.04393923490488305
AESAVEELMP	10	Unmodified	_AESAVEELMP_					0	0	0		nc|ENSG00000092208|O14893-4|GEMIN2;ENST00000525430.1_1_14:39583533-39591807:+|nuORF;nc|ENSG00000092208|O14893-3|GEMIN2;nc|ENSG00000092208|O14893-2|GEMIN2;ENSG00000092208|ENST00000308317|GEMIN2;nc|ENSG00000092208|O14893|GEMIN2	nc|ENSG00000092208|O14893-4|GEMIN2	nc|ENSG00000092208|O14893-4|GEMIN2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	359.170719	1074.49033	-0.11501	-4.1307E-05	0.64201	0.00023059	0.527	0.00018928	359.1708278587961	48.136	0.50219	48.897	48.632	49.134	0.76127	0.02055	0.00039981	NaN	12.175	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1997600			1565	2002	986	1000							-0.04393923490488305
AESCDDVTGEC	11	Unmodified	_AESCDDVTGEC_					0	0	0		ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	MSMS	A375_MHC_IP_R2	2	564.717529296875	2	564.694629	1127.3747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.018	1	89.75	89.25	90.25	0.7318								0	0	0	0.16249	1	33880	33880		5.7319	0	1				1566	9059	987	1001	1546	1546					-0.18388815403636727
AESCEAPEEG	10	Unmodified	_AESCEAPEEG_					0	0	0			REV__nc|ENSG00000160310|P55345-6|PRMT2	REV__nc|ENSG00000160310|P55345-6|PRMT2	MULTI-MSMS	A375_MHC_IP_R2	2	511.1781921386719	2	511.192579	1020.37061	-1.0349	-0.00052901	-3.4053	-0.0017408	-4.4401	-0.0022698	511.69150217275455	33.245	0.35587	33.997	33.891	34.247	0.75225					11	6	2	0	0	0	0.70496	1	11960	11960		10.074	0.72649	1	1816000	+		1567	20161	988	1002	1547	1547					-0.1387653683506187
AESCEAPEEG	10	Unmodified	_AESCEAPEEG_					0	0	0			REV__nc|ENSG00000160310|P55345-6|PRMT2	REV__nc|ENSG00000160310|P55345-6|PRMT2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	511.192579	1020.37061	-1.0349	-0.00052901	-3.4053	-0.0017408	-4.4401	-0.0022698	511.69150217275455	33.245	0.35587	33.997	33.891	34.247	0.75225	0.076548	0.00017884	NaN	10.074	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1816000	+		1568	20161	988	1002							-0.1387653683506187
AESDEFGPVY	10	Unmodified	_AESDEFGPVY_					0	0	0			REV__ENST00000550771.5_1_12:49212712-49217616:+|nuORF	REV__ENST00000550771.5_1_12:49212712-49217616:+|nuORF	MSMS	A375_MHC_IP_R2	2	557.20458984375	2	557.240386	1112.46622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.134	1	44.903	44.403	45.403	0.7691								0	0	0	0.15308	1	16465	16465		10.824	2.9138	1		+		1569	20768	989	1003	1548	1548					-0.0855144065251352
AESDFASTF	9	Unmodified	_AESDFASTF_					0	0	0		ENSG00000111652|ENST00000543155|COPS7A;COPS7A|p.R65W|1|0.63|ENSG00000111652|chr12:6727956-6727956|C/T|missense_variant	ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	MULTI-SECPEP	A375_MHC_IP_R1	1	487.1355895996094	2	487.708722	973.402892	-0.35541	-0.00017334	0.085137	4.1522E-05	-0.27027	-0.00013181	487.70860137211616	76.853	0.81407	76.853	76.421	77.235	0					31	15	3	0	0	0	0.040439	1	27960	27960		81.613	49.308	1	8072700			1570	3007	990	1004	1549	1549					-0.08487381369752711
AESDFASTF	9	Unmodified	_AESDFASTF_					0	0	0		ENSG00000111652|ENST00000543155|COPS7A;COPS7A|p.R65W|1|0.63|ENSG00000111652|chr12:6727956-6727956|C/T|missense_variant	ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	MULTI-MSMS	A375_MHC_IP_R2	2	488.1083984375	2	487.708722	973.402892	-0.56895	-0.00027748	0.14789	7.2129E-05	-0.42106	-0.00020536	487.7086815147356	76.174	0.81346	76.914	76.487	77.301	0.74052					41	15	4	0	0	0	0.050162	2	28844	28844;28965		64.236	38.837	1	11550000			1571	3007	990	1004	1550;1551	1550					-0.08487381369752711
AESDGSFLL	9	Unmodified	_AESDGSFLL_					0	0	0		ENSG00000141385|ENST00000269143|AFG3L2	ENSG00000141385|ENST00000269143|AFG3L2	ENSG00000141385|ENST00000269143|AFG3L2	MULTI-MSMS	A375_MHC_IP_R1	1	938.8208618164062	1	938.446553	937.439277	0.0078599	7.3761E-06	-0.5667	-0.00053181	-0.55884	-0.00052444	938.4460533659219	98.798	0.56111	98.798	98.403	98.964	0					16	10	2	0	0	0	0.11296	1	36255	36255		48.346	8.3885	1	2035200			1572	5234	991	1005	1552	1552					-0.03194504473037796
AESDGSFLL	9	Unmodified	_AESDGSFLL_					0	0	0		ENSG00000141385|ENST00000269143|AFG3L2	ENSG00000141385|ENST00000269143|AFG3L2	ENSG00000141385|ENST00000269143|AFG3L2	MULTI-MATCH	A375_MHC_IP_R2	2		1	938.446553	937.439277	-0.3005	-0.000282	-0.33859	-0.00031775	-0.63909	-0.00059975	938.4467511872958	97.887	0.55975	98.643	98.331	98.891	0.75586	-0.07791	8.5879E-05	NaN	48.346	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1872500			1573	5234	991	1005							-0.03194504473037796
AESDQSYES	9	Unmodified	_AESDQSYES_					0	0	0			REV__nc|ENSG00000101605|P52179-2|MYOM1	REV__nc|ENSG00000101605|P52179-2|MYOM1	MSMS	A375_MHC_IP_R2	2	508.1654968261719	2	508.196176	1014.3778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.658	1	52.41	51.91	52.91	0.75225								0	0	0	0.15486	1	19445	19445		7.2892	0.56607	1		+		1574	17178	992	1006	1553	1553					-0.12881480962983005
AESELQKEL	9	Unmodified	_AESELQKEL_					0	0	0		ENSG00000166171|ENST00000370151|DPCD	ENSG00000166171|ENST00000370151|DPCD	ENSG00000166171|ENST00000370151|DPCD	MULTI-MSMS	A375_MHC_IP_R1	1	524.171630859375	2	523.771854	1045.52915	-0.21285	-0.00011148	-0.15366	-8.0481E-05	-0.3665	-0.00019196	523.7717681380493	38.74	0.66143	38.74	38.475	39.136	0					29	12	3	0	0	0	0.00075692	1	13139	13139		197.81	78.911	1	32414000			1575	7036	993	1007	1554	1554					0.008211251355305649
AESELQKEL	9	Unmodified	_AESELQKEL_					0	0	0		ENSG00000166171|ENST00000370151|DPCD	ENSG00000166171|ENST00000370151|DPCD	ENSG00000166171|ENST00000370151|DPCD	MULTI-MSMS	A375_MHC_IP_R2	2	524.1712646484375	2	523.771854	1045.52915	-0.74777	-0.00039166	-0.072741	-3.81E-05	-0.82051	-0.00042976	523.7717847654404	37.959	0.56474	38.733	38.483	39.047	0.77451					34	10	4	0	0	0	1.633E-06	2	13904	13894;13904		211.85	85.289	1	28279000			1576	7036	993	1007	1555;1556	1556					0.008211251355305649
AESEPEPDGA	10	Unmodified	_AESEPEPDGA_					0	0	0			REV__ENSG00000134775|ENST00000590592|FHOD3	REV__ENSG00000134775|ENST00000590592|FHOD3	MSMS	A375_MHC_IP_R2	2	501.16363525390625	2	501.206544	1000.39853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.14	1	60.887	60.387	61.387	0.74714								0	0	0	0.15158	1	22762	22762		14.838	3.198	1		+		1577	18799	994	1008	1557	1557					-0.10164890583325814
AESFWWWNRTW	11	Unmodified	_AESFWWWNRTW_					0	0	0			REV__ENST00000404295.7_1_16:4519400-4524561:-|nuORF	REV__ENST00000404295.7_1_16:4519400-4524561:-|nuORF	MSMS	A375_MHC_IP_R1	1	523.6204833984375	3	523.573837	1567.69968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.822	1	41.822	41.322	42.322	0								0	0	0	0.16334	1	14460	14460		0.45452	0.046251	1		+		1578	24424	995	1009	1558	1558					-0.06145919422351653
AESGAIRAL	9	Unmodified	_AESGAIRAL_					0	0	0		ENST00000487431.1_1_9:127624149-127624209:-|nuORF	ENST00000487431.1_1_9:127624149-127624209:-|nuORF	ENST00000487431.1_1_9:127624149-127624209:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	444.28814697265625	2	444.250892	886.48723	0.013142	5.8382E-06	-0.16387	-7.2799E-05	-0.15073	-6.6961E-05	444.2507777334782	35.043	0.7126	35.043	34.759	35.472	0					24	13	4	0	0	0	0.13845	1	11666	11666		43.772	5.7984	1	26229000			1579	12598	996	1010	1559	1559					0.03944614237661881
AESGAIRAL	9	Unmodified	_AESGAIRAL_					0	0	0		ENST00000487431.1_1_9:127624149-127624209:-|nuORF	ENST00000487431.1_1_9:127624149-127624209:-|nuORF	ENST00000487431.1_1_9:127624149-127624209:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	444.650390625	2	444.250892	886.48723	-0.69268	-0.00030772	0.026543	1.1792E-05	-0.66613	-0.00029593	444.2508650590987	34.262	0.50865	35.014	34.753	35.262	0.75225					16	9	2	0	0	0	0.10622	2	12326	12326;12383		49.554	2.1491	1	21636000			1580	12598	996	1010	1560;1561	1560					0.03944614237661881
AESGAMEGETL	11	Unmodified	_AESGAMEGETL_					0	0	0		nc|ENSG00000073060|Q8WTV0-3|SCARB1;nc|ENSG00000073060|Q8WTV0-4|SCARB1;ENST00000535005.5_1_12:125267231-125351555:-|nuORF;nc|ENSG00000073060|Q8WTV0-5|SCARB1;ENSG00000073060|ENST00000261693|SCARB1;nc|ENSG00000073060|Q8WTV0|SCARB1	nc|ENSG00000073060|Q8WTV0-3|SCARB1	nc|ENSG00000073060|Q8WTV0-3|SCARB1	MULTI-MSMS	A375_MHC_IP_R1	1	547.7103881835938	2	547.737154	1093.45975	-0.65796	-0.00036039	-0.051727	-2.8333E-05	-0.70969	-0.00038872	547.7373057892357	91.376	0.80952	91.376	90.845	91.655	0					26	15	3	0	0	0	0.66658	2	33479	33479;33522		18.146	4.2403	1	2473600			1581	1557	997	1011	1562;1563	1562					-0.08323701875519873
AESGAMEGETL	11	Unmodified	_AESGAMEGETL_					0	0	0		nc|ENSG00000073060|Q8WTV0-3|SCARB1;nc|ENSG00000073060|Q8WTV0-4|SCARB1;ENST00000535005.5_1_12:125267231-125351555:-|nuORF;nc|ENSG00000073060|Q8WTV0-5|SCARB1;ENSG00000073060|ENST00000261693|SCARB1;nc|ENSG00000073060|Q8WTV0|SCARB1	nc|ENSG00000073060|Q8WTV0-3|SCARB1	nc|ENSG00000073060|Q8WTV0-3|SCARB1	MULTI-MSMS	A375_MHC_IP_R2	2	548.6383056640625	2	547.737154	1093.45975	-0.68254	-0.00037385	0.80558	0.00044125	0.12304	6.7393E-05	547.737422701977	90.65	0.75903	91.384	91.109	91.868	0.7345					28	14	3	0	0	0	0.66658	2	34504	34437;34504		18.146	3.3081	1	1642200			1582	1557	997	1011	1564;1565	1565					-0.08323701875519873
AESGAVAEY	9	Unmodified	_AESGAVAEY_					0	0	0			REV__nc|ENSG00000146555|Q7Z5N4-3|SDK1	REV__nc|ENSG00000146555|Q7Z5N4-3|SDK1	MULTI-MSMS	A375_MHC_IP_R1	1	896.3717651367188	1	896.399603	895.392327	-0.045671	-4.0939E-05	0.50994	0.00045711	0.46427	0.00041617	896.3997098963007	128.2	0.55722	128.2	128.02	128.58	0					13	10	2	0	0	0	0.55818	1	49213	49213		16.942	0	1	10522000	+		1583	19542	998	1012	1566	1566					-0.05955364024191567
AESGDSVKMY	10	Oxidation (M)	_AESGDSVKM(Oxidation (M))Y_		AESGDSVKM(1)Y		AESGDSVKM(73)Y	0	0	1		ENST00000467731.1_1_21:33057290-33073360:-|nuORF;nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;ENSG00000156304|ENST00000286835|SCAF4	ENST00000467731.1_1_21:33057290-33073360:-|nuORF	ENST00000467731.1_1_21:33057290-33073360:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	552.1388549804688	2	551.739696	1101.46484	-0.22725	-0.00012539	-0.48226	-0.00026608	-0.70951	-0.00039147	551.7393228103771	21.923	0.61046	21.923	21.706	22.317	0					19	11	2	0	0	0	0.20174	1	5823	5823		73.196	50.46	1	3056700			1584	6187	999	1013	1567	1567		330			-0.08183398012920406
AESGDSVKMY	10	Oxidation (M)	_AESGDSVKM(Oxidation (M))Y_		AESGDSVKM(1)Y		AESGDSVKM(67)Y	0	0	1		ENST00000467731.1_1_21:33057290-33073360:-|nuORF;nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;ENSG00000156304|ENST00000286835|SCAF4	ENST00000467731.1_1_21:33057290-33073360:-|nuORF	ENST00000467731.1_1_21:33057290-33073360:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1390991210938	2	551.739696	1101.46484	-1.118	-0.00061685	0.24004	0.00013244	-0.87798	-0.00048442	551.7398066266622	21.524	0.76473	22.143	21.928	22.693	0.61932					19	14	2	0	0	0	0.17966	1	6770	6770		67.081	45.544	1	2383300			1585	6187	999	1013	1568	1568		330			-0.08183398012920406
AESGIIKV	8	Unmodified	_AESGIIKV_					0	0	0		nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;MON2|p.L1675Ffs*21|1|0.57|ENSG00000061987|chr12:62592617-62592618|-/T|frameshift_variant;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2	nc|ENSG00000061987|Q7Z3U7-2|MON2	nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-SECPEP	A375_MHC_IP_R1	1	409.1448974609375	2	408.744911	815.475269	0.065893	2.6934E-05	-0.0096393	-3.94E-06	0.056254	2.2994E-05	408.74483545703293	42.664	0.50601	42.664	42.436	42.942	0					13	9	2	0	0	0	0.64713	1	14813	14813		36.127	10.728	1	2530700			1586	1324	1000	1014	1569	1569					0.060149974944692985
AESGIIKV	8	Unmodified	_AESGIIKV_					0	0	0		nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;MON2|p.L1675Ffs*21|1|0.57|ENSG00000061987|chr12:62592617-62592618|-/T|frameshift_variant;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2	nc|ENSG00000061987|Q7Z3U7-2|MON2	nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-SECPEP	A375_MHC_IP_R2	2	409.14471435546875	2	408.744911	815.475269	0.0022528	9.2084E-07	-0.22019	-9.0003E-05	-0.21794	-8.9082E-05	408.74470480754195	41.769	0.46063	42.543	42.35	42.811	0.77451					14	8	2	0	0	0	0.64713	1	15547	15547		29.082	9.8246	1	1983900			1587	1324	1000	1014	1570	1570					0.060149974944692985
AESGPDLRY	9	Unmodified	_AESGPDLRY_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	MULTI-SECPEP	A375_MHC_IP_R1	1	504.6432189941406	2	504.243264	1006.47197	-0.48817	-0.00024616	0.11581	5.8396E-05	-0.37236	-0.00018776	504.2433633392992	36.313	0.40567	36.313	36.084	36.489	0					14	7	2	0	0	0	0.33896	1	12130	12130		47.594	22.195	1	6746200			1588	2060	1001	1015	1571	1571					-0.031002973501813358
AESGPDLRY	9	Unmodified	_AESGPDLRY_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	MULTI-SECPEP	A375_MHC_IP_R2	2	504.6427307128906	2	504.243264	1006.47197	-0.88314	-0.00044532	0.47962	0.00024184	-0.40352	-0.00020347	504.24352414105715	35.595	0.50616	36.358	36.132	36.638	0.76338					15	9	2	0	0	0	0.23894	1	12903	12903		47.594	18.513	1	9724000			1589	2060	1001	1015	1572	1572					-0.031002973501813358
AESHHFSESYP	11	Unmodified	_AESHHFSESYP_					0	0	0			REV__ENSG00000175294|ENST00000312106|CATSPER1	REV__ENSG00000175294|ENST00000312106|CATSPER1	MSMS	A375_MHC_IP_R1	1	430.63262939453125	3	430.851036	1289.53128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.905	1	23.905	23.405	24.405	0								0	0	0	0.16191	1	6660	6660		4.4062	0.56024	1		+		1590	21336	1002	1016	1573	1573					-0.10190446126671304
AESHIILVL	9	Unmodified	_AESHIILVL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-SECPEP	A375_MHC_IP_R1	1	498.1998596191406	2	497.800217	993.585882	-0.14279	-7.1083E-05	-0.20964	-0.00010436	-0.35243	-0.00017544	497.800025424201	92.815	0.76402	92.815	92.515	93.279	0					40	14	4	0	0	0	0.043556	1	34090	34090		89.427	25.864	1	9056600			1591	2529	1003	1017	1574	1574					0.0888321748270755
AESHLKRN	8	Unmodified	_AESHLKRN_					0	0	0		nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2;ENSG00000168769|ENST00000380013|TET2	nc|ENSG00000168769|Q6N021-2|TET2	nc|ENSG00000168769|Q6N021-2|TET2	MULTI-SECPEP	A375_MHC_IP_R1	1	478.15936279296875	2	477.759415	953.504277	-0.42544	-0.00020326	-0.19568	-9.3487E-05	-0.62112	-0.00029675	477.7594192200791	33.586	0.35461	33.586	33.393	33.748	0					13	6	3	0	0	0	0.87643	1	11015	11015		25.399	0	1	2389000			1592	7340	1004	1018	1575	1575					0.02566534843458612
AESITFKSV	9	Unmodified	_AESITFKSV_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;RBBP6|p.E1056Nfs*55|1|0.28|ENSG00000122257|chr16:24569855-24569855|T/-|frameshift_variant	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MULTI-SECPEP	A375_MHC_IP_R1	1	490.6820068359375	2	491.266207	980.517862	0.18946	9.3074E-05	-0.75563	-0.00037122	-0.56618	-0.00027814	491.26575748191993	49.143	0.65865	49.143	48.78	49.439	0					16	12	2	0	0	0	0.49205	1	17339	17339		34.402	6.7729	1	1612600			1593	3771	1005	1019	1576	1576					0.026823478320466165
AESITFKSV	9	Unmodified	_AESITFKSV_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;RBBP6|p.E1056Nfs*55|1|0.28|ENSG00000122257|chr16:24569855-24569855|T/-|frameshift_variant	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MULTI-SECPEP	A375_MHC_IP_R2	2	491.6295166015625	2	491.266207	980.517862	-0.47319	-0.00023246	-0.27417	-0.00013469	-0.74736	-0.00036715	491.26590395047754	48.304	0.50206	49.061	48.729	49.231	0.75737					17	9	2	0	0	0	0.4261	1	18078	18078		30.637	6.616	1	2094200			1594	3771	1005	1019	1577	1577					0.026823478320466165
AESIVVHTY	9	Unmodified	_AESIVVHTY_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	A375_MHC_IP_R1	1	510.16363525390625	2	509.763832	1017.51311	-0.52148	-0.00026583	0.044103	2.2482E-05	-0.47738	-0.00024335	509.7638565636462	41.952	1.5246	41.952	41.215	42.739	0					78	29	6	0	0	0	0.00028503	1	14478	14478		205.38	142.81	1	94773000			1595	3884	1006	1020	1578	1578					0.005054636892737108
AESIVVHTY	9	Unmodified	_AESIVVHTY_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-SECPEP	A375_MHC_IP_R1	1	510.16339111328125	2	509.763832	1017.51311	-0.348	-0.0001774	-0.045571	-2.323E-05	-0.39357	-0.00020063	509.7638718535888	62.972	0.76722	62.972	62.66	63.427	0					27	14	3	0	0	0	0.4261	1	22731	22731		24.021	0	1	4384800			1596	3884	1006	1020	1579	1579					0.005054636892737108
AESIVVHTY	9	Unmodified	_AESIVVHTY_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	A375_MHC_IP_R2	2	510.1869201660156	2	509.763832	1017.51311	-0.98693	-0.0005031	0.095983	4.8929E-05	-0.89095	-0.00045417	509.76387860969345	41.188	1.1695	41.963	41.386	42.555	0.77451					60	22	5	0	0	0	0.005759	3	15304	15240;15281;15304		188.58	126	1	83586000			1597	3884	1006	1020	1580;1581;1582	1582					0.005054636892737108
AESIVVHTY	9	Unmodified	_AESIVVHTY_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	A375_MHC_IP_R2	2	510.67327880859375	2	509.763832	1017.51311	-0.92982	-0.00047399	-0.19919	-0.00010154	-1.129	-0.00057553	509.76383269252887	62.133	0.86229	62.875	62.622	63.484	0.74263					32	16	4	0	0	0	0.58047	1	23480	23480		15.847	0	1	4253600			1598	3884	1006	1020	1583	1583					0.005054636892737108
AESKEIVRGY	10	Unmodified	_AESKEIVRGY_					0	0	0		nc|ENSG00000054148|Q9NRX4-2|PHPT1;ENSG00000054148|ENST00000247665|PHPT1;ENST00000492540.5_1_9:139743852-139744679:+|nuORF	nc|ENSG00000054148|Q9NRX4-2|PHPT1	nc|ENSG00000054148|Q9NRX4-2|PHPT1	MULTI-MSMS	A375_MHC_IP_R1	1	576.7059326171875	2	576.306395	1150.59824	-0.46233	-0.00026644	0.091663	5.2826E-05	-0.37067	-0.00021362	576.3064753732425	23.705	0.20315	23.705	23.584	23.787	0					9	3	3	0	0	0	0.040521	1	6589	6589		78.61	42.998	1	7032800			1599	1255	1007	1021	1584	1584					0.02896209155096585
AESKEIVRGY	10	Unmodified	_AESKEIVRGY_					0	0	0		nc|ENSG00000054148|Q9NRX4-2|PHPT1;ENSG00000054148|ENST00000247665|PHPT1;ENST00000492540.5_1_9:139743852-139744679:+|nuORF	nc|ENSG00000054148|Q9NRX4-2|PHPT1	nc|ENSG00000054148|Q9NRX4-2|PHPT1	MULTI-MSMS	A375_MHC_IP_R2	2	384.93988037109375	3	384.540022	1150.59824	-0.46523	-0.0001789	0.21145	8.131E-05	-0.25379	-9.7591E-05	384.5401172448417	22.924	0.56179	23.554	23.215	23.777	0.63015					22	10	3	0	0	0	0.10198	1	7302	7302		48.561	26.452	1	9639000			1600	1255	1007	1021	1585	1585					0.02896209155096585
AESKEIVRGY	10	Unmodified	_AESKEIVRGY_					0	0	0		nc|ENSG00000054148|Q9NRX4-2|PHPT1;ENSG00000054148|ENST00000247665|PHPT1;ENST00000492540.5_1_9:139743852-139744679:+|nuORF	nc|ENSG00000054148|Q9NRX4-2|PHPT1	nc|ENSG00000054148|Q9NRX4-2|PHPT1	MULTI-SECPEP	A375_MHC_IP_R2	2	384.2608642578125	3	384.540022	1150.59824	-0.39791	-0.00015301	0.67581	0.00025988	0.2779	0.00010686	384.5402120429949	23.606	0.15337	24.236	24.129	24.283	0.63014					4	2	2	0	0	0	0.87043	1	7613	7613		13.519	8.8027	1	1226100			1601	1255	1007	1021	1586	1586					0.02896209155096585
AESKEIVRGY	10	Unmodified	_AESKEIVRGY_					0	0	0		nc|ENSG00000054148|Q9NRX4-2|PHPT1;ENSG00000054148|ENST00000247665|PHPT1;ENST00000492540.5_1_9:139743852-139744679:+|nuORF	nc|ENSG00000054148|Q9NRX4-2|PHPT1	nc|ENSG00000054148|Q9NRX4-2|PHPT1	MULTI-SECPEP	A375_MHC_IP_R2	2	576.6403198242188	2	576.306395	1150.59824	-0.52326	-0.00030156	0.11874	6.8431E-05	-0.40452	-0.00023313	576.306364697132	22.917	0.35741	23.547	23.368	23.726	0.63014					9	6	2	0	0	0	0.60589	1	7342	7342		42.312	11.044	1	3276600			1602	1255	1007	1021	1587	1587					0.02896209155096585
AESLAQLTI	9	Unmodified	_AESLAQLTI_					0	0	0			REV__ENSG00000079482|ENST00000355520|OPHN1	REV__ENSG00000079482|ENST00000355520|OPHN1	MULTI-SECPEP	A375_MHC_IP_R1	1	473.17974853515625	2	473.266207	944.517862	-0.45816	-0.00021683	-0.89552	-0.00042382	-1.3537	-0.00064065	473.26599474788577	42.057	1.3708	42.057	41.521	42.891	0					53	26	3	0	0	0	0.20451	1	14535	14535		28.495	0	1	30215000	+		1603	16735	1008	1022	1588	1588					0.04338347832049294
AESLFREAL	9	Unmodified	_AESLFREAL_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;chrX:151919037-151923453|150|252.27|0.24|10.04|+|ENST00000431971|MAGEA4,MAGEA4;chrX:151914958-151923453|148|308.46|0.33|9.87|+|ENST00000441865|MAGEA4,MAGEA4;chrX:151913588-151923453|148|306.86|0.32|9.9|+|ENST00000448295|MAGEA4,MAGEA4;chrX:151916320-151923453|148|311.47|0.37|9.72|+|ENST00000425182|MAGEA4,MAGEA4;MAGEA4|p.L137Wfs*14|1|0.86|ENSG00000147381|chrX:151924073-151924073|C/-|frameshift_variant;MAGEA4|p.P100L|1|0.38|ENSG00000147381|chrX:151923963-151923963|C/T|missense_variant	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-SECPEP	A375_MHC_IP_R2	2	518.6766357421875	2	518.277106	1034.53966	-0.82553	-0.00042785	-0.52203	-0.00027056	-1.3476	-0.00069841	518.2766872390886	72.568	0.60886	73.303	72.973	73.581	0.73541					18	11	2	0	0	0	0.16237	1	27532	27532		63.227	34.146	1	3990900			1604	520	1009	1023	1589	1589					0.023771525806068894
AESLGELHY	9	Unmodified	_AESLGELHY_					0	0	0		ENST00000557373.1_1_14:35344023-35344692:+|nuORF	ENST00000557373.1_1_14:35344023-35344692:+|nuORF	ENST00000557373.1_1_14:35344023-35344692:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	509.69158935546875	2	509.745639	1017.47673	-0.27697	-0.00014118	-0.22556	-0.00011498	-0.50253	-0.00025616	509.74553447949205	47.729	0.90842	47.729	47.315	48.223	0					26	17	2	0	0	0	0.55818	1	16957	16957		16.942	4.4107	1	2700100			1605	13448	1010	1024	1590	1590					-0.03131413207427158
AESLGQHRG	9	Unmodified	_AESLGQHRG_					0	0	0			REV__ENST00000323571.8_1_17:38421248-38421311:+|nuORF	REV__ENST00000323571.8_1_17:38421248-38421311:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	477.6656188964844	2	477.741222	953.467892	-0.32544	-0.00015547	0.19603	9.3651E-05	-0.12941	-6.1824E-05	477.7413088073954	100.17	0.56012	100.94	100.63	101.19	0.76278					19	10	2	0	0	0	0.46465	1	38044	38044		21.537	3.3906	1	1737700	+		1606	23584	1011	1025	1591	1591					-0.01070342053242257
AESLGQHRG	9	Unmodified	_AESLGQHRG_					0	0	0			REV__ENST00000323571.8_1_17:38421248-38421311:+|nuORF	REV__ENST00000323571.8_1_17:38421248-38421311:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	477.741222	953.467892	-0.44044	-0.00021042	0.28885	0.000138	-0.15159	-7.2422E-05	477.7413501130842	101.12	0.75972	101.12	100.58	101.34	0	0.090042	5.1865E-05	NaN	21.537	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1562500	+		1607	23584	1011	1025							-0.01070342053242257
AESLGRHLPL	10	Unmodified	_AESLGRHLPL_					0	0	0		ENST00000527215.6_1_8:11721919-11725594:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF	ENST00000527215.6_1_8:11721919-11725594:-|nuORF	ENST00000527215.6_1_8:11721919-11725594:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6659545898438	2	546.811648	1091.60874	-0.46261	-0.00025296	-0.35098	-0.00019192	-0.81359	-0.00044488	546.8116338032673	52.206	0.81229	52.206	51.575	52.387	0					18	15	2	0	0	0	0.91909	1	18410	18410		13.906	12.062	1	1048500			1608	13093	1012	1026	1592	1592					0.06660236600191638
AESLIAKKI	9	Unmodified	_AESLIAKKI_					0	0	0		ENSG00000166226|ENST00000299300|CCT2;nc|ENSG00000166226|P78371-2|CCT2;ENST00000550638.5_1_12:69979244-69982049:+|nuORF;ENST00000551620.5_1_12:69979244-69983508:+|nuORF	ENSG00000166226|ENST00000299300|CCT2	ENSG00000166226|ENST00000299300|CCT2	MULTI-MSMS	A375_MHC_IP_R1	1	487.2078857421875	2	486.808042	971.601532	-0.31651	-0.00015408	-0.0034828	-1.6955E-06	-0.31999	-0.00015577	486.8080001114787	31.217	1.1675	31.217	30.908	32.075	0					74	22	5	0	0	0	0.0094639	1	10147	10147		106.94	50.763	1	171240000			1609	7044	1013	1027	1593	1593					0.11459503999742537
AESLIAKKI	9	Unmodified	_AESLIAKKI_					0	0	0		ENSG00000166226|ENST00000299300|CCT2;nc|ENSG00000166226|P78371-2|CCT2;ENST00000550638.5_1_12:69979244-69982049:+|nuORF;ENST00000551620.5_1_12:69979244-69983508:+|nuORF	ENSG00000166226|ENST00000299300|CCT2	ENSG00000166226|ENST00000299300|CCT2	MULTI-SECPEP	A375_MHC_IP_R2	2	487.20782470703125	2	486.808042	971.601532	-0.6151	-0.00029943	-0.045778	-2.2285E-05	-0.66088	-0.00032172	486.8079975103425	30.37	1.0622	31.089	30.759	31.821	0.71857					68	20	5	0	0	0	0.010462	1	10611	10611		145.13	45.331	1	132870000			1610	7044	1013	1027	1594	1594					0.11459503999742537
AESLKTLRY	9	Unmodified	_AESLKTLRY_					0	0	0		ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B;ENST00000491510.1_1_3:25668659-25671642:-|nuORF	ENSG00000077097|ENST00000264331|TOP2B	ENSG00000077097|ENST00000264331|TOP2B	MULTI-MSMS	A375_MHC_IP_R1	1	361.2729797363281	3	360.873113	1079.59751	-0.0042356	-1.5285E-06	-0.20157	-7.2741E-05	-0.2058	-7.4269E-05	360.8730026323283	32.308	0.40921	32.308	32.075	32.485	0					12	7	2	0	0	0	0.085252	1	10439	10439		53.317	18.237	1	4625900			1611	1646	1014	1028	1595	1595					0.060894145060501614
AESLKTLRY	9	Unmodified	_AESLKTLRY_					0	0	0		ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B;ENST00000491510.1_1_3:25668659-25671642:-|nuORF	ENSG00000077097|ENST00000264331|TOP2B	ENSG00000077097|ENST00000264331|TOP2B	MULTI-MSMS	A375_MHC_IP_R2	2	361.2731628417969	3	360.873113	1079.59751	-0.22183	-8.0053E-05	-0.021468	-7.7471E-06	-0.2433	-8.78E-05	360.8730728036611	31.538	0.45972	32.257	31.974	32.434	0.71857					14	8	2	0	0	0	0.037085	1	11152	11152		69.338	39.901	1	4364900			1612	1646	1014	1028	1596	1596					0.060894145060501614
AESLQPKGY	9	Unmodified	_AESLQPKGY_					0	0	0		nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MULTI-SECPEP	A375_MHC_IP_R1	1	497.1556701660156	2	496.756007	991.497461	-0.47725	-0.00023708	-0.51672	-0.00025669	-0.99397	-0.00049376	496.7560059836725	28.211	0.95807	28.211	27.937	28.895	0					47	18	4	0	0	0	0.05021	1	8633	8633		88.954	17.032	1	51601000			1613	1717	1015	1029	1597	1597					0.0013717717223471482
AESLQPKGY	9	Unmodified	_AESLQPKGY_					0	0	0		nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MULTI-SECPEP	A375_MHC_IP_R2	2	497.1556701660156	2	496.756007	991.497461	-0.46192	-0.00022946	-0.79515	-0.00039499	-1.2571	-0.00062446	496.75596731105435	27.598	0.91294	28.276	27.996	28.909	0.67857					44	17	3	0	0	0	0.025235	1	9416	9416		107.19	18.233	1	56785000			1614	1717	1015	1029	1598	1598					0.0013717717223471482
AESLYEIRF	9	Unmodified	_AESLYEIRF_					0	0	0		ENSG00000100926|ENST00000261789|TM9SF1;nc|ENSG00000100926|O15321-2|TM9SF1	ENSG00000100926|ENST00000261789|TM9SF1	ENSG00000100926|ENST00000261789|TM9SF1	MULTI-SECPEP	A375_MHC_IP_R1	1	564.6903076171875	2	564.290214	1126.56587	-0.49168	-0.00027745	0.51635	0.00029137	0.024666	1.3919E-05	564.2905526593744	89.895	0.91141	89.895	89.323	90.235	0					44	17	4	0	0	0	0.10495	1	32999	32999		65.474	13.844	1	7784100			1615	2233	1016	1030	1599	1599					0.007654217520894235
AESLYEIRF	9	Unmodified	_AESLYEIRF_					0	0	0		ENSG00000100926|ENST00000261789|TM9SF1;nc|ENSG00000100926|O15321-2|TM9SF1	ENSG00000100926|ENST00000261789|TM9SF1	ENSG00000100926|ENST00000261789|TM9SF1	MULTI-SECPEP	A375_MHC_IP_R2	2	564.6900024414062	2	564.290214	1126.56587	-0.40619	-0.00022921	-0.42721	-0.00024107	-0.83339	-0.00047028	564.290306371108	89.149	0.85709	89.88	89.482	90.339	0.7318					44	16	4	0	0	0	0.14554	1	33907	33907		57.249	13.477	1	6869000			1616	2233	1016	1030	1600	1600					0.007654217520894235
AESMISVVLG	10	Unmodified	_AESMISVVLG_					0	0	0		ENSG00000157796|ENST00000399820|WDR19;nc|ENSG00000157796|Q8NEZ3-2|WDR19;ENST00000512448.1_1_4:39201144-39207357:+|nuORF	ENSG00000157796|ENST00000399820|WDR19	ENSG00000157796|ENST00000399820|WDR19	MULTI-MSMS	A375_MHC_IP_R2	2	503.667724609375	2	503.267893	1004.52123	-0.47242	-0.00023775	0.23632	0.00011893	-0.2361	-0.00011882	503.26794754170857	47.269	0.76488	48.03	47.664	48.429	0.76127					29	14	3	0	0	0	0.62155	1	17704	17704		19.257	3.4098	1	4232600			1617	6266	1017	1031	1601	1601					0.019152746144186494
AESNPTHYGF	10	Unmodified	_AESNPTHYGF_					0	0	0		ENSG00000108733|ENST00000225873|PEX12	ENSG00000108733|ENST00000225873|PEX12	ENSG00000108733|ENST00000225873|PEX12	MULTI-MSMS	A375_MHC_IP_R1	1	562.1458740234375	2	561.74617	1121.47779	-0.46832	-0.00026308	0.65185	0.00036617	0.18353	0.0001031	561.7461837671203	40.229	1.2194	40.229	39.643	40.863	0					46	23	4	0	0	0	0.00079117	2	13794	13794;13902		148.27	114.82	1	15341000			1618	2831	1018	1032	1602;1603	1602					-0.07809198838549491
AESNPTHYGF	10	Unmodified	_AESNPTHYGF_					0	0	0		ENSG00000108733|ENST00000225873|PEX12	ENSG00000108733|ENST00000225873|PEX12	ENSG00000108733|ENST00000225873|PEX12	MULTI-MSMS	A375_MHC_IP_R2	2	562.175537109375	2	561.74617	1121.47779	-0.62891	-0.00035329	0.60247	0.00033843	-0.026438	-1.4851E-05	561.7462363423308	39.52	0.91742	40.294	39.708	40.626	0.77451					40	17	4	0	0	0	2.8699E-05	2	14609	14571;14609		160.69	127.24	1	16793000			1619	2831	1018	1032	1604;1605	1605					-0.07809198838549491
AESPDELSF	9	Unmodified	_AESPDELSF_					0	0	0		nc|ENSG00000050820|P56945-4|BCAR1;nc|ENSG00000050820|P56945-5|BCAR1;nc|ENSG00000050820|P56945-8|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1	nc|ENSG00000050820|P56945-4|BCAR1	nc|ENSG00000050820|P56945-4|BCAR1	MULTI-MSMS	A375_MHC_IP_R1	1	994.3597412109375	1	994.436383	993.429106	0.25471	0.00025329	0.33494	0.00033308	0.58965	0.00058637	994.4362391205702	79.559	0.76955	79.559	79.161	79.931	0					32	14	3	0	0	0	0.009271	1	29020	29020		103.75	36.404	1	12805000			1620	1232	1019	1033	1606	1606					-0.0678711219827619
AESPDELSF	9	Unmodified	_AESPDELSF_					0	0	0		nc|ENSG00000050820|P56945-4|BCAR1;nc|ENSG00000050820|P56945-5|BCAR1;nc|ENSG00000050820|P56945-8|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1	nc|ENSG00000050820|P56945-4|BCAR1	nc|ENSG00000050820|P56945-4|BCAR1	MULTI-MSMS	A375_MHC_IP_R2	2	994.35888671875	1	994.436383	993.429106	0.084341	8.3871E-05	-0.037926	-3.7715E-05	0.046415	4.6157E-05	994.4359568954326	78.86	0.71001	79.605	79.287	79.997	0.74473					33	13	3	0	0	0	0.018546	1	29998	29998		85.272	27.801	1	13838000			1621	1232	1019	1033	1607	1607					-0.0678711219827619
AESPDLRRL	9	Unmodified	_AESPDLRRL_					0	0	0		nc|ENSG00000145216|Q6UN15-4|FIP1L1;nc|ENSG00000145216|Q6UN15-5|FIP1L1;ENSG00000145216|ENST00000337488|FIP1L1;ENST00000505125.5_1_4:54245288-54325613:+|nuORF	nc|ENSG00000145216|Q6UN15-4|FIP1L1	nc|ENSG00000145216|Q6UN15-4|FIP1L1	MULTI-SECPEP	A375_MHC_IP_R1	1	352.9814758300781	3	352.864729	1055.57236	-0.3366	-0.00011878	0.15595	5.5028E-05	-0.18066	-6.3747E-05	352.86477214289675	32.651	0.45309	32.651	32.434	32.887	0					18	8	3	0	0	0	0.46045	1	10541	10541		27.223	4.5652	1	3693400			1622	5541	1020	1034	1608	1608					0.046793597034593404
AESPERVLL	9	Unmodified	_AESPERVLL_					0	0	0		ENSG00000130775|ENST00000373921|THEMIS2;nc|ENSG00000130775|Q5TEJ8-6|THEMIS2;nc|ENSG00000130775|Q5TEJ8-3|THEMIS2;nc|ENSG00000130775|Q5TEJ8-5|THEMIS2	ENSG00000130775|ENST00000373921|THEMIS2	ENSG00000130775|ENST00000373921|THEMIS2	MULTI-SECPEP	A375_MHC_IP_R1	1	507.6846923828125	2	507.284931	1012.55531	-0.37643	-0.00019096	-0.30491	-0.00015468	-0.68134	-0.00034563	507.2848005673239	54.792	0.50847	54.792	54.567	55.075	0					19	9	3	0	0	0	0.47674	1	19605	19605		29.841	20.457	1	2520700			1623	4281	1021	1035	1609	1609					0.04953439097675982
AESPERVLL	9	Unmodified	_AESPERVLL_					0	0	0		ENSG00000130775|ENST00000373921|THEMIS2;nc|ENSG00000130775|Q5TEJ8-6|THEMIS2;nc|ENSG00000130775|Q5TEJ8-3|THEMIS2;nc|ENSG00000130775|Q5TEJ8-5|THEMIS2	ENSG00000130775|ENST00000373921|THEMIS2	ENSG00000130775|ENST00000373921|THEMIS2	MULTI-SECPEP	A375_MHC_IP_R2	2	507.4421691894531	2	507.284931	1012.55531	-1.1264	-0.00057143	-0.24337	-0.00012346	-1.3698	-0.00069489	507.2846713473703	53.962	0.66423	54.713	54.404	55.068	0.75105					19	12	2	0	0	0	0.5212	1	20368	20368		26.268	12.362	1	1718700			1624	4281	1021	1035	1610	1610					0.04953439097675982
AESPPVNAAW	10	Unmodified	_AESPPVNAAW_					0	0	0			REV__nc|ENSG00000186635|Q96P48-2|ARAP1	REV__nc|ENSG00000186635|Q96P48-2|ARAP1	MULTI-MSMS	A375_MHC_IP_R2	2	521.652587890625	2	521.253631	1040.49271	-0.87788	-0.0004576	0.62153	0.00032398	-0.25635	-0.00013362	521.2536148800228	56.229	0.71463	56.979	56.489	57.203	0.75015					27	13	3	0	0	0	0.55789	1	21294	21294		24.021	0.87215	1	3434600	+		1625	21978	1022	1036	1611	1611					-0.02591706970542873
AESPPVNAAW	10	Unmodified	_AESPPVNAAW_					0	0	0			REV__nc|ENSG00000186635|Q96P48-2|ARAP1	REV__nc|ENSG00000186635|Q96P48-2|ARAP1	MULTI-MATCH	A375_MHC_IP_R1	1		2	521.253631	1040.49271	-0.42947	-0.00022386	0.6422	0.00033475	0.21273	0.00011089	521.2535443486556	56.939	0.76467	56.939	56.498	57.263	0	-0.01999	1.3712E-05	NaN	24.021	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4342000	+		1626	21978	1022	1036							-0.02591706970542873
AESPTPQAL	9	Unmodified	_AESPTPQAL_					0	0	0		ENST00000470483.1_1_10:127477439-127483604:-|nuORF;ENST00000465577.5_1_10:127477439-127486658:-|nuORF;ENSG00000188690|ENST00000368797|UROS	ENST00000470483.1_1_10:127477439-127483604:-|nuORF	ENST00000470483.1_1_10:127477439-127483604:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	457.6347351074219	2	457.234907	912.455261	0.27044	0.00012366	-0.42131	-0.00019264	-0.15087	-6.8982E-05	457.234810861242	45.005	0.55682	45.005	44.827	45.384	0					15	10	2	0	0	0	0.02559	1	15760	15760		78.728	26.46	1	1811100			1627	8924	1023	1037	1612	1612					-0.004467982361461509
AESPTPQAL	9	Unmodified	_AESPTPQAL_					0	0	0		ENST00000470483.1_1_10:127477439-127483604:-|nuORF;ENST00000465577.5_1_10:127477439-127486658:-|nuORF;ENSG00000188690|ENST00000368797|UROS	ENST00000470483.1_1_10:127477439-127483604:-|nuORF	ENST00000470483.1_1_10:127477439-127483604:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	457.6348876953125	2	457.234907	912.455261	-0.2447	-0.00011189	0.13811	6.3148E-05	-0.1066	-4.8739E-05	457.23484831117827	44.379	0.60753	45.149	44.782	45.39	0.7691					18	11	2	0	0	0	0.037683	1	16547	16547		69.105	23.084	1	1950700			1628	8924	1023	1037	1613	1613					-0.004467982361461509
AESPVFKEL	9	Unmodified	_AESPVFKEL_					0	0	0		ENSG00000168575|ENST00000520262|SLC20A2	ENSG00000168575|ENST00000520262|SLC20A2	ENSG00000168575|ENST00000520262|SLC20A2	MULTI-MSMS	A375_MHC_IP_R1	1	510.6739501953125	2	510.274032	1018.53351	-0.39913	-0.00020367	0.74441	0.00037985	0.34528	0.00017619	510.2738160561982	61.933	1.5346	61.933	61.534	63.069	0					99	29	7	0	0	0	0.095851	2	22512	22512;22645		51.415	11.466	1	111740000			1629	7323	1024	1038	1614;1615	1614					0.02498634349092299
AESPVFKEL	9	Unmodified	_AESPVFKEL_					0	0	0		ENSG00000168575|ENST00000520262|SLC20A2	ENSG00000168575|ENST00000520262|SLC20A2	ENSG00000168575|ENST00000520262|SLC20A2	MULTI-MSMS	A375_MHC_IP_R2	2	1019.8201293945312	1	1019.54079	1018.53351	-0.27647	-0.00028187	-0.20993	-0.00021404	-0.4864	-0.00049591	1019.5406705505451	60.977	0.45376	61.722	61.566	62.02	0.74504					15	8	2	0	0	0	0.095851	1	23168	23168		51.415	28.679	1	2963200			1630	7323	1024	1038	1616	1616					0.02498634349092299
AESPVFKEL	9	Unmodified	_AESPVFKEL_					0	0	0		ENSG00000168575|ENST00000520262|SLC20A2	ENSG00000168575|ENST00000520262|SLC20A2	ENSG00000168575|ENST00000520262|SLC20A2	MULTI-MSMS	A375_MHC_IP_R2	2	510.6737060546875	2	510.274032	1018.53351	-1.0563	-0.00053902	1.0714	0.00054669	0.015033	7.6709E-06	510.27392630934935	61.041	1.3622	61.786	61.364	62.726	0.74503					109	26	6	0	0	0	0.21241	2	23412	23412;23434		37.075	6.4381	1	109080000			1631	7323	1024	1038	1617;1618	1617					0.02498634349092299
AESPVFKEL	9	Unmodified	_AESPVFKEL_					0	0	0		ENSG00000168575|ENST00000520262|SLC20A2	ENSG00000168575|ENST00000520262|SLC20A2	ENSG00000168575|ENST00000520262|SLC20A2	MULTI-MATCH	A375_MHC_IP_R1	1		1	1019.54079	1018.53351	0.2232	0.00022756	1.2124	0.0012361	1.4356	0.0014636	1019.5402699470193	61.919	0.6128	61.919	61.636	62.249	0	0.098797	0.0013352	NaN	51.415	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2272300			1632	7323	1024	1038							0.02498634349092299
AESQQYNGSSM	11	Unmodified	_AESQQYNGSSM_					0	0	0			REV__nc|ENSG00000188266|A2RU49-2|HYKK	REV__nc|ENSG00000188266|A2RU49-2|HYKK	MULTI-MSMS	A375_MHC_IP_R1	1	602.2183227539062	2	601.243135	1200.47172	-0.3113	-0.00018717	0.44541	0.0002678	0.13411	8.0633E-05	601.2431216541231	101.74	0.75928	101.74	101.34	102.1	0					38	14	4	0	0	0	0.72494	1	37360	37360		13.615	3.5409	1	6232500	+		1633	22080	1025	1039	1619	1619					-0.12050085132364075
AESRFYCQVEK	11	Unmodified	_AESRFYCQVEK_					0	0	0			REV__ENSG00000162733|ENST00000367921|DDR2	REV__ENSG00000162733|ENST00000367921|DDR2	MSMS	A375_MHC_IP_R1	1	680.2180786132812	2	680.321719	1358.62889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.312	1	83.312	82.812	83.812	0								0	0	0	0.16152	1	30484	30484		10.8	0.72558	1		+		1634	20299	1026	1040	1620	1620					-0.03608380522200605
AESRFYCQVEK	11	Unmodified	_AESRFYCQVEK_					0	0	0			REV__ENSG00000162733|ENST00000367921|DDR2	REV__ENSG00000162733|ENST00000367921|DDR2	MSMS	A375_MHC_IP_R2	2	680.2177734375	2	680.321719	1358.62889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.794	1	83.537	83.037	84.037	0.74293								0	0	0	0.16152	1	31456	31456		10.8	0.64894	1		+		1635	20299	1026	1040	1621	1621					-0.03608380522200605
AESSLYPR	8	Unmodified	_AESSLYPR_					0	0	0			REV__nc|ENSG00000164823|Q9Y236|OSGIN2	REV__nc|ENSG00000164823|Q9Y236|OSGIN2	MULTI-MSMS	A375_MHC_IP_R1	1	462.27490234375	2	461.735074	921.455596	-0.093747	-4.3286E-05	-0.12231	-5.6475E-05	-0.21606	-9.9761E-05	461.73501908934145	35.344	0.55994	35.344	35.013	35.573	0					20	10	3	0	0	0	0.7011	1	11748	11748		34.402	0.29928	1	2942400	+		1636	20519	1027	1041	1622	1622					-0.008273785162828062
AESSLYPR	8	Unmodified	_AESSLYPR_					0	0	0			REV__nc|ENSG00000164823|Q9Y236|OSGIN2	REV__nc|ENSG00000164823|Q9Y236|OSGIN2	MULTI-SECPEP	A375_MHC_IP_R1	1	462.1351623535156	2	461.735074	921.455596	-0.093747	-4.3286E-05	-0.12231	-5.6475E-05	-0.21606	-9.9761E-05	461.73501908934145	35.344	0.55994	35.344	35.013	35.573	0					20	10	3	0	0	0	0.73227	1	11757	11757		37.974	11.09	1	2942400	+		1637	20519	1027	1041	1623	1623					-0.008273785162828062
AESSSHYSHRY	11	Unmodified	_AESSSHYSHRY_					0	0	0			REV__PTPRR|p.N126Kfs*39|1|0.41|ENSG00000153233|chr12:70764758-70764759|-/T|frameshift_variant	REV__PTPRR|p.N126Kfs*39|1|0.41|ENSG00000153233|chr12:70764758-70764759|-/T|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	662.1861572265625	2	662.289265	1322.56398	-0.92334	-0.00061152	-1.7191	-0.0011385	-2.6424	-0.0017501	662.2882466202276	39.431	0.30415	40.206	40.067	40.371	0.77451					7	5	2	0	0	0	0.66366	1	14613	14613		18.373	3.9677	1	1599600	+		1638	19833	1028	1042	1624	1624					-0.08440239003812167
AESSTPSSCAH	11	Unmodified	_AESSTPSSCAH_					0	0	0			REV__ENST00000291892.10_1_19:55558575-55559456:-|nuORF	REV__ENST00000291892.10_1_19:55558575-55559456:-|nuORF	MSMS	A375_MHC_IP_R1	1	359.428466796875	3	359.481956	1075.42404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.296	1	42.296	41.796	42.796	0								0	0	0	0.16297	1	14651	14651		1.3296	0	1		+		1639	23365	1029	1043	1625	1625					-0.11065739332548219
AESVLEQAW	9	Unmodified	_AESVLEQAW_					0	0	0			REV__ENST00000547632.1_1_12:52309584-52313004:+|nuORF	REV__ENST00000547632.1_1_12:52309584-52313004:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	517.1528930664062	2	516.753464	1031.49238	-0.6305	-0.00032581	-1.4963	-0.0007732	-2.1268	-0.001099	516.7525186029266	41.981	0.66238	41.981	41.571	42.233	0					21	12	4	0	0	0	0.5212	1	14550	14550		20.415	4.5674	1	2471200	+		1640	26009	1030	1044	1626	1626					-0.022111266903721116
AESVTEEKF	9	Unmodified	_AESVTEEKF_					0	0	0		ENSG00000173757|ENST00000293328|STAT5B;nc|ENSG00000126561|P42229-2|STAT5A;ENST00000468496.5_1_17:40362419-40369297:-|nuORF;ENSG00000126561|ENST00000590949|STAT5A	ENSG00000173757|ENST00000293328|STAT5B;ENSG00000126561|ENST00000590949|STAT5A	ENSG00000126561|ENST00000590949|STAT5A	MULTI-MSMS	A375_MHC_IP_R1	1	520.6505737304688	2	520.250754	1038.48696	-0.66687	-0.00034694	0.25332	0.00013179	-0.41355	-0.00021515	520.2508264767038	32.321	0.4593	32.321	32.075	32.535	0					20	8	3	0	0	0	0.04093	1	10422	10422		67.838	37.202	1	5255000			1641	7827;4049	1031	1045	1627	1627					-0.03074850272855656
AESVTEEKF	9	Unmodified	_AESVTEEKF_					0	0	0		ENSG00000173757|ENST00000293328|STAT5B;nc|ENSG00000126561|P42229-2|STAT5A;ENST00000468496.5_1_17:40362419-40369297:-|nuORF;ENSG00000126561|ENST00000590949|STAT5A	ENSG00000173757|ENST00000293328|STAT5B;ENSG00000126561|ENST00000590949|STAT5A	ENSG00000126561|ENST00000590949|STAT5A	MULTI-SECPEP	A375_MHC_IP_R2	2	520.6504516601562	2	520.250754	1038.48696	-0.67136	-0.00034927	0.27493	0.00014303	-0.39643	-0.00020624	520.2507642007653	31.636	0.4599	32.372	32.095	32.555	0.73691					13	8	2	0	0	0	0.23894	1	11205	11205		55.503	24.866	1	4512400			1642	7827;4049	1031	1045	1628	1628					-0.03074850272855656
AESVVVIKKL	10	Unmodified	_AESVVVIKKL_					0	0	0		nc|ENSG00000103723|Q13367-3|AP3B2;nc|ENSG00000103723|Q13367|AP3B2;ENSG00000103723|ENST00000535359|AP3B2;ENST00000543938.5_1_15:83328314-83349061:-|nuORF;ENSG00000132842|ENST00000255194|AP3B1;nc|ENSG00000132842|O00203-3|AP3B1	nc|ENSG00000103723|Q13367-3|AP3B2;ENSG00000132842|ENST00000255194|AP3B1	nc|ENSG00000103723|Q13367-3|AP3B2	MULTI-MSMS	A375_MHC_IP_R1	1	362.9692687988281	3	362.569142	1084.6856	0.39615	0.00014363	0.20955	7.5978E-05	0.6057	0.00021961	362.5691346963626	43.122	0.51023	43.122	42.79	43.3	0					17	8	3	0	0	0	0.65106	1	14981	14981		17.049	2.8304	1	3681100			1643	2467;4457	1032	1046	1629	1629					0.1466403509666634
AESVVVIKKL	10	Unmodified	_AESVVVIKKL_					0	0	0		nc|ENSG00000103723|Q13367-3|AP3B2;nc|ENSG00000103723|Q13367|AP3B2;ENSG00000103723|ENST00000535359|AP3B2;ENST00000543938.5_1_15:83328314-83349061:-|nuORF;ENSG00000132842|ENST00000255194|AP3B1;nc|ENSG00000132842|O00203-3|AP3B1	nc|ENSG00000103723|Q13367-3|AP3B2;ENSG00000132842|ENST00000255194|AP3B1	nc|ENSG00000103723|Q13367-3|AP3B2	MULTI-SECPEP	A375_MHC_IP_R1	1	543.7498779296875	2	543.350074	1084.6856	-0.36491	-0.00019827	0.30537	0.00016592	-0.05954	-3.2351E-05	543.3501568710486	43.152	0.30648	43.152	42.942	43.249	0					10	5	2	0	0	0	0.22519	1	15003	15003		67.838	37.202	1	2301700			1644	2467;4457	1032	1046	1630	1630					0.1466403509666634
AESVVVIKKL	10	Unmodified	_AESVVVIKKL_					0	0	0		nc|ENSG00000103723|Q13367-3|AP3B2;nc|ENSG00000103723|Q13367|AP3B2;ENSG00000103723|ENST00000535359|AP3B2;ENST00000543938.5_1_15:83328314-83349061:-|nuORF;ENSG00000132842|ENST00000255194|AP3B1;nc|ENSG00000132842|O00203-3|AP3B1	nc|ENSG00000103723|Q13367-3|AP3B2;ENSG00000132842|ENST00000255194|AP3B1	nc|ENSG00000103723|Q13367-3|AP3B2	MULTI-MSMS	A375_MHC_IP_R2	2	363.2535705566406	3	362.569142	1084.6856	-0.067586	-2.4505E-05	-0.043257	-1.5684E-05	-0.11084	-4.0188E-05	362.56909776037975	42.219	0.51123	42.992	42.757	43.268	0.7724					15	9	3	0	0	0	0.65106	1	15688	15688		17.049	9.5715	1	3389400			1645	2467;4457	1032	1046	1631	1631					0.1466403509666634
AESWYQTKY	9	Unmodified	_AESWYQTKY_					0	0	0		CON__P13647;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P04259;CON__P48668;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000185479|ENST00000252252|KRT6B;KRT75|p.E348K|1|0.36|ENSG00000170454|chr12:52428737-52428737|C/T|missense_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__Q922U2;CON__P02538;ENST00000553087.1_1_12:52864282-52865086:-|nuORF;CON__P50446;CON__Q8BGZ7;CON__O95678;ENSG00000170454|ENST00000252245|KRT75;CON__Q8VED5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;CON__Q5XQN5	CON__P13647	CON__P13647	MULTI-SECPEP	A375_MHC_IP_R1	1	588.6723022460938	2	588.272021	1174.52949	-0.043236	-2.5435E-05	0.74172	0.00043633	0.69848	0.0004109	588.2721643786956	48.096	0.85856	48.096	47.467	48.325	0					30	16	3	0	0	0	0.0082179	1	16938	16938		165.72	123.76	1	5455800		+	1646	589	1033	1047	1632	1632					-0.050794551446415426
AESWYQTKY	9	Unmodified	_AESWYQTKY_					0	0	0		CON__P13647;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P04259;CON__P48668;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000185479|ENST00000252252|KRT6B;KRT75|p.E348K|1|0.36|ENSG00000170454|chr12:52428737-52428737|C/T|missense_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__Q922U2;CON__P02538;ENST00000553087.1_1_12:52864282-52865086:-|nuORF;CON__P50446;CON__Q8BGZ7;CON__O95678;ENSG00000170454|ENST00000252245|KRT75;CON__Q8VED5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;CON__Q5XQN5	CON__P13647	CON__P13647	MULTI-MSMS	A375_MHC_IP_R2	2	392.9188232421875	3	392.517106	1174.52949	-0.46909	-0.00018412	3.2892	0.0012911	2.8202	0.001107	392.5189707300901	19.205	0.30274	19.808	19.683	19.986	0.60308					11	5	3	0	0	0	0.69884	1	5914	5914		7.1017	0.064636	1	2283000		+	1647	589	1033	1047	1633	1633					-0.050794551446415426
AESWYQTKY	9	Unmodified	_AESWYQTKY_					0	0	0		CON__P13647;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P04259;CON__P48668;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000185479|ENST00000252252|KRT6B;KRT75|p.E348K|1|0.36|ENSG00000170454|chr12:52428737-52428737|C/T|missense_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__Q922U2;CON__P02538;ENST00000553087.1_1_12:52864282-52865086:-|nuORF;CON__P50446;CON__Q8BGZ7;CON__O95678;ENSG00000170454|ENST00000252245|KRT75;CON__Q8VED5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;CON__Q5XQN5	CON__P13647	CON__P13647	MULTI-SECPEP	A375_MHC_IP_R2	2	588.6723022460938	2	588.272021	1174.52949	-0.39824	-0.00023428	0.74674	0.00043929	0.3485	0.00020501	588.2721117907848	47.438	0.86625	48.2	47.563	48.429	0.76128					23	16	2	0	0	0	0.011143	1	17781	17781		136.39	97.777	1	4866100		+	1648	589	1033	1047	1634	1634					-0.050794551446415426
AESYRIQTY	9	Unmodified	_AESYRIQTY_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;nc|ENSG00000140694|O95453-3|PARN;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-4|PARN	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	A375_MHC_IP_R1	1	566.1775512695312	2	565.77747	1129.54039	-0.32336	-0.00018295	0.11012	6.2304E-05	-0.21324	-0.00012065	565.7776850624836	38.628	0.40824	38.628	38.423	38.832	0					16	7	3	0	0	0	0.0083527	2	13124	13124;13160		128.93	82.911	1	5012100			1649	5179	1034	1048	1635;1636	1635					-0.019200527703333137
AESYRIQTY	9	Unmodified	_AESYRIQTY_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;nc|ENSG00000140694|O95453-3|PARN;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-4|PARN	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	A375_MHC_IP_R2	2	566.1766967773438	2	565.77747	1129.54039	-0.62196	-0.00035189	-0.28138	-0.0001592	-0.90334	-0.00051109	565.7774196818796	37.887	0.51388	38.661	38.432	38.946	0.77451					16	9	3	0	0	0	0.0064781	1	13898	13898		132.38	90.424	1	5184900			1650	5179	1034	1048	1637	1637					-0.019200527703333137
AETADQCFTV	10	Unmodified	_AETADQCFTV_					0	0	0		ENST00000232974.10_1_3:42706666-42706834:+|nuORF	ENST00000232974.10_1_3:42706666-42706834:+|nuORF	ENST00000232974.10_1_3:42706666-42706834:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	542.203125	2	542.734414	1083.45428	-0.74968	-0.00040688	1.1278	0.00061211	0.37815	0.00020524	542.735481599471	92.7	0.25508	93.439	93.291	93.546	0.73902					6	4	2	0	0	0	0.85226	1	35251	35251		14.838	4.7643	1	669550			1651	10150	1035	1049	1638	1638					-0.08411380667371304
AETAHISSPH	10	Unmodified	_AETAHISSPH_					0	0	0		ENSG00000007384|ENST00000262316|RHBDF1;ENST00000472390.1_1_16:114617-126308:-|nuORF	ENSG00000007384|ENST00000262316|RHBDF1	ENSG00000007384|ENST00000262316|RHBDF1	MULTI-MSMS	A375_MHC_IP_R2	2	525.204833984375	2	525.254163	1048.49377	-0.72527	-0.00038095	3.3476	0.0017584	2.6224	0.0013774	525.7584561213174	49.958	0.45895	50.712	50.445	50.904	0.75406					22	8	3	0	0	0	0.63639	1	18796	18796		18.146	1.2041	1	2281000			1652	942	1036	1050	1639	1639					-0.02853492601616381
AETAQLALP	9	Unmodified	_AETAQLALP_					0	0	0			REV__nc|ENSG00000103995|O94986-1|CEP152	REV__nc|ENSG00000103995|O94986-1|CEP152	MULTI-MSMS	A375_MHC_IP_R2	2	457.296142578125	2	457.2531	912.491647	-0.48796	-0.00022312	0.83866	0.00038348	0.3507	0.00016036	457.2535060121394	49.162	0.30463	49.919	49.741	50.046	0.75737					8	5	2	0	0	0	0.4867	1	18423	18423		20.454	1.1966	1	868480	+		1653	17296	1037	1051	1640	1640					0.03190078660554718
AETARLTSF	9	Unmodified	_AETARLTSF_					0	0	0		ENSG00000166226|ENST00000299300|CCT2;ENST00000550638.5_1_12:69979244-69982049:+|nuORF;ENST00000551620.5_1_12:69979244-69983508:+|nuORF;ENST00000549933.5_1_12:69979244-69980637:+|nuORF;ENST00000550455.5_1_12:69979244-69981425:+|nuORF;ENST00000546859.5_1_12:69979244-69981900:+|nuORF	ENSG00000166226|ENST00000299300|CCT2	ENSG00000166226|ENST00000299300|CCT2	MULTI-SECPEP	A375_MHC_IP_R1	1	498.6612548828125	2	498.261456	994.50836	-0.28911	-0.00014405	1.053	0.00052465	0.76385	0.0003806	498.2621245192781	45.966	1.3162	45.966	45.534	46.85	0					36	25	3	0	0	0	0.09145	1	16072	16072		78.06	34.202	1	8090400			1654	7044	1038	1052	1641	1641					0.010885795465242154
AETARLTSF	9	Unmodified	_AETARLTSF_					0	0	0		ENSG00000166226|ENST00000299300|CCT2;ENST00000550638.5_1_12:69979244-69982049:+|nuORF;ENST00000551620.5_1_12:69979244-69983508:+|nuORF;ENST00000549933.5_1_12:69979244-69980637:+|nuORF;ENST00000550455.5_1_12:69979244-69981425:+|nuORF;ENST00000546859.5_1_12:69979244-69981900:+|nuORF	ENSG00000166226|ENST00000299300|CCT2	ENSG00000166226|ENST00000299300|CCT2	MULTI-MSMS	A375_MHC_IP_R2	2	498.6612548828125	2	498.261456	994.50836	-0.62277	-0.0003103	-0.1849	-9.2131E-05	-0.80767	-0.00040243	498.26132866121867	45.036	0.61118	45.806	45.543	46.154	0.76909					26	11	3	0	0	0	0.0090873	1	16801	16801		100.71	56.85	1	5016100			1655	7044	1038	1052	1642	1642					0.010885795465242154
AETDAIRFL	9	Unmodified	_AETDAIRFL_					0	0	0		ENSG00000032389|ENST00000382125|EIPR1	ENSG00000032389|ENST00000382125|EIPR1	ENSG00000032389|ENST00000382125|EIPR1	MULTI-SECPEP	A375_MHC_IP_R2	2	518.677001953125	2	518.277106	1034.53966	-0.78792	-0.00040836	-3.5932	-0.0018623	-4.3811	-0.0022706	518.2772069507237	81.334	0.55607	82.078	81.775	82.331	0.74388					40	10	6	0	0	0	0.14606	1	30882	30882		47.594	21.326	1	8226900			1656	1116	1039	1053	1643	1643					0.023771525806068894
AETDERRLL	9	Unmodified	_AETDERRLL_					0	0	0		ENST00000337288.9_2_2:96874284-96874539:-|nuORF	ENST00000337288.9_2_2:96874284-96874539:-|nuORF	ENST00000337288.9_2_2:96874284-96874539:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	368.6000671386719	3	368.199889	1101.57784	0.32567	0.00011991	-0.3945	-0.00014525	-0.068831	-2.5344E-05	368.19979413505314	28.661	0.70828	28.661	28.39	29.098	0					37	13	4	0	0	0	0.068071	1	8856	8856		57.249	18.634	1	26993000			1657	10828	1040	1054	1644	1644					0.031110384952853565
AETDERRLL	9	Unmodified	_AETDERRLL_					0	0	0		ENST00000337288.9_2_2:96874284-96874539:-|nuORF	ENST00000337288.9_2_2:96874284-96874539:-|nuORF	ENST00000337288.9_2_2:96874284-96874539:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	368.5997009277344	3	368.199889	1101.57784	0.11382	4.1908E-05	-0.068729	-2.5306E-05	0.045088	1.6601E-05	368.19967720676266	27.98	1.0133	28.658	28.098	29.112	0.67857					58	19	5	0	0	0	0.10637	1	9587	9587		49.527	17.49	1	28456000			1658	10828	1040	1054	1645	1645					0.031110384952853565
AETDERRLL	9	Unmodified	_AETDERRLL_					0	0	0		ENST00000337288.9_2_2:96874284-96874539:-|nuORF	ENST00000337288.9_2_2:96874284-96874539:-|nuORF	ENST00000337288.9_2_2:96874284-96874539:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	552.196044921875	2	551.796195	1101.57784	-0.88454	-0.00048808	0.11596	6.3986E-05	-0.76858	-0.0004241	551.7961850258534	27.957	0.50783	28.636	28.452	28.96	0.67857					30	9	4	0	0	0	0.10495	1	9617	9617		57.249	24.463	1	9337500			1659	10828	1040	1054	1646	1646					0.031110384952853565
AETDFEKRDF	10	Unmodified	_AETDFEKRDF_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-MSMS	A375_MHC_IP_R1	1	420.55584716796875	3	419.863053	1256.56733	0.060129	2.5246E-05	0.077595	3.2579E-05	0.13772	5.7825E-05	419.86304972792817	33.317	0.60819	33.317	33.04	33.648	0					34	11	4	0	0	0	0.44533	1	10792	10792		31.462	19.83	1	32990000			1660	7279	1041	1055	1647	1647					-0.050689889498244156
AETDFEKRDF	10	Unmodified	_AETDFEKRDF_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-MSMS	A375_MHC_IP_R1	1	629.6905517578125	2	629.290942	1256.56733	-0.64615	-0.00040662	0.3851	0.00024234	-0.26105	-0.00016428	629.291087955154	33.317	0.55812	33.317	33.09	33.648	0					17	10	2	0	0	0	0.011413	1	10857	10857		146.68	104.72	1	10272000			1661	7279	1041	1055	1648	1648					-0.050689889498244156
AETDFEKRDF	10	Unmodified	_AETDFEKRDF_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-SECPEP	A375_MHC_IP_R2	2	420.2630920410156	3	419.863053	1256.56733	-0.14002	-5.879E-05	0.13028	5.4701E-05	-0.0097405	-4.0897E-06	419.8630677998584	32.655	0.6104	33.392	33.112	33.722	0.73692					35	11	4	0	0	0	0.134	1	11605	11605		84.738	41.903	1	38787000			1662	7279	1041	1055	1649	1649					-0.050689889498244156
AETDFEKRDF	10	Unmodified	_AETDFEKRDF_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-SECPEP	A375_MHC_IP_R2	2	629.6903686523438	2	629.290942	1256.56733	-0.87194	-0.00054871	0.52761	0.00033202	-0.34434	-0.00021669	629.2912316267721	32.621	0.61105	33.357	33.162	33.773	0.73692					25	11	4	0	0	0	0.011562	1	11637	11637		169.92	112.2	1	8078100			1663	7279	1041	1055	1650	1650					-0.050689889498244156
AETDLAKRF	9	Unmodified	_AETDLAKRF_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-SECPEP	A375_MHC_IP_R1	1	526.182373046875	2	525.782556	1049.55056	-0.63733	-0.0003351	-0.045	-2.366E-05	-0.68233	-0.00035876	525.7823984923008	32.964	0.3541	32.964	32.785	33.14	0					11	6	2	0	0	0	0.20059	1	10721	10721		59.368	26.583	1	3075400			1664	6152	1042	1056	1651	1651					0.027765549549030766
AETDLAKRF	9	Unmodified	_AETDLAKRF_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	A375_MHC_IP_R2	2	351.25750732421875	3	350.857463	1049.55056	-0.25374	-8.9028E-05	-0.2321	-8.1433E-05	-0.48584	-0.00017046	351.5258852284384	32.198	0.40753	32.935	32.704	33.112	0.73692					19	7	3	0	0	0	0.047602	1	11471	11471		51.415	25.395	1	7009900			1665	6152	1042	1056	1652	1652					0.027765549549030766
AETDRHTFL	9	Unmodified	_AETDRHTFL_					0	0	0		nc|ENSG00000116525|Q9BVG3-2|TRIM62;ENSG00000116525|ENST00000291416|TRIM62	nc|ENSG00000116525|Q9BVG3-2|TRIM62	nc|ENSG00000116525|Q9BVG3-2|TRIM62	MULTI-MSMS	A375_MHC_IP_R1	1	364.2491149902344	3	363.848967	1088.52507	0.21985	7.9992E-05	0.038322	1.3943E-05	0.25817	9.3935E-05	363.84894260962295	31.468	0.55725	31.468	31.262	31.819	0					17	10	2	0	0	0	0.19747	1	10083	10083		35.612	21.207	1	3993500			1666	3403	1043	1057	1653	1653					-0.015649195675223382
AETDRHTFL	9	Unmodified	_AETDRHTFL_					0	0	0		nc|ENSG00000116525|Q9BVG3-2|TRIM62;ENSG00000116525|ENST00000291416|TRIM62	nc|ENSG00000116525|Q9BVG3-2|TRIM62	nc|ENSG00000116525|Q9BVG3-2|TRIM62	MSMS	A375_MHC_IP_R1	1	545.6693725585938	2	545.269813	1088.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.53	1	31.53	31.03	32.03	0								0	0	0	0.06041	1	10101	10101		51.415	15.371	1				1667	3403	1043	1057	1654	1654					-0.015649195675223382
AETDRHTFL	9	Unmodified	_AETDRHTFL_					0	0	0		nc|ENSG00000116525|Q9BVG3-2|TRIM62;ENSG00000116525|ENST00000291416|TRIM62	nc|ENSG00000116525|Q9BVG3-2|TRIM62	nc|ENSG00000116525|Q9BVG3-2|TRIM62	MULTI-MSMS	A375_MHC_IP_R2	2	364.2485046386719	3	363.848967	1088.52507	-0.072582	-2.6409E-05	-0.50398	-0.00018337	-0.57657	-0.00020978	363.8487704147878	30.604	0.60499	31.323	31.114	31.719	0.71857					20	11	2	0	0	0	0.34064	1	10806	10806		32.037	32.037	1	3336900			1668	3403	1043	1057	1655	1655					-0.015649195675223382
AETDVSLVYR	10	Unmodified	_AETDVSLVYR_					0	0	0		MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant;ENSG00000105429|ENST00000251268|MEGF8	MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant	MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	577.1979370117188	2	576.798403	1151.58225	-0.14364	-8.2849E-05	-0.10785	-6.2207E-05	-0.25149	-0.00014506	576.7984034827916	50.89	0.35365	50.89	50.663	51.017	0					11	6	2	0	0	0	0.69834	1	18065	18065		35.612	17.466	1	2193800			1669	2606	1044	1058	1656	1656					0.012525029181688296
AETEALSKL	9	Unmodified	_AETEALSKL_					0	0	0		nc|ENSG00000109854|Q9BUP3-2|HTATIP2;ENSG00000109854|ENST00000451739|HTATIP2;nc|ENSG00000109854|Q9BUP3-3|HTATIP2	nc|ENSG00000109854|Q9BUP3-2|HTATIP2	nc|ENSG00000109854|Q9BUP3-2|HTATIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	481.6636657714844	2	481.263665	960.512776	-0.52098	-0.00025073	0.44209	0.00021276	-0.078893	-3.7968E-05	481.26365076655776	41.906	0.71415	41.906	41.368	42.082	0					15	13	2	0	0	0	0.27114	1	14533	14533		53.404	3.471	1	2886000			1670	2898	1045	1059	1657	1657					0.030940439694290944
AETEGYLRF	9	Unmodified	_AETEGYLRF_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000478082.5_1_7:100856177-100861250:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-SECPEP	A375_MHC_IP_R1	1	543.6661987304688	2	543.266739	1084.51892	-0.78276	-0.00042525	0.34484	0.00018734	-0.43792	-0.0002379	543.2668992545324	66.436	1.0175	66.436	66.022	67.04	0					69	19	5	0	0	0	0.031881	1	23992	23992		129.77	71.094	1	52844000			1671	2688	1046	1060	1658	1658					-0.019954377990416106
AETEGYLRF	9	Unmodified	_AETEGYLRF_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000478082.5_1_7:100856177-100861250:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	A375_MHC_IP_R2	2	543.6802978515625	2	543.266739	1084.51892	-0.99708	-0.00054168	0.19478	0.00010582	-0.8023	-0.00043587	543.2668057301347	65.662	1.0694	66.4	65.968	67.037	0.73811					69	20	5	0	0	0	0.0016844	2	24858	24858;25029		163.04	94.955	1	63635000			1672	2688	1046	1060	1659;1660	1659					-0.019954377990416106
AETELVRFL	9	Unmodified	_AETELVRFL_					0	0	0		nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2;ENST00000546053.1_1_12:6676973-6677084:-|nuORF;ENST00000542015.1_1_12:6669877-6677084:-|nuORF	nc|ENSG00000111641|P46087-3|NOP2	nc|ENSG00000111641|P46087-3|NOP2	MULTI-SECPEP	A375_MHC_IP_R1	1	539.7003173828125	2	539.300581	1076.58661	-0.82128	-0.00044292	0.74557	0.00040209	-0.075703	-4.0827E-05	539.3010701237401	94.646	0.56213	94.646	94.394	94.956	0					17	10	2	0	0	0	0.20451	1	34820	34820		41.956	0	1	3277900			1673	3004	1047	1061	1661	1661					0.05138012131760661
AETEPIVKM	9	Oxidation (M)	_AETEPIVKM(Oxidation (M))_		AETEPIVKM(1)		AETEPIVKM(120)	0	0	1		ENST00000518442.5_1_8:109247181-109261015:-|nuORF;ENSG00000104408|ENST00000220849|EIF3E	ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENST00000518442.5_1_8:109247181-109261015:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	517.6648559570312	2	517.26535	1032.51615	-0.80003	-0.00041383	-0.303	-0.00015673	-1.103	-0.00057056	517.2653107127309	25.942	0.75972	25.942	25.613	26.373	0					32	14	3	0	0	0	0.0099819	1	7657	7657		122.18	56.944	1	30357000			1674	2507	1048	1062	1662	1662		110			0.0011897075178239902
AETEPIVKM	9	Oxidation (M)	_AETEPIVKM(Oxidation (M))_		AETEPIVKM(1)		AETEPIVKM(54)	0	0	1		ENST00000518442.5_1_8:109247181-109261015:-|nuORF;ENSG00000104408|ENST00000220849|EIF3E	ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENST00000518442.5_1_8:109247181-109261015:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	517.6647338867188	2	517.26535	1032.51615	-0.71217	-0.00036838	-0.20155	-0.00010426	-0.91372	-0.00047264	517.2653019732239	27.041	2.0169	27.041	26.524	28.541	0					49	39	2	0	0	0	0.14572	1	8144	8144		53.833	17.706	1	3398700			1675	2507	1048	1062	1663	1663		110			0.0011897075178239902
AETEPIVKM	9	Oxidation (M)	_AETEPIVKM(Oxidation (M))_		AETEPIVKM(1)		AETEPIVKM(130)	0	0	1		ENST00000518442.5_1_8:109247181-109261015:-|nuORF;ENSG00000104408|ENST00000220849|EIF3E	ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENST00000518442.5_1_8:109247181-109261015:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	517.6646728515625	2	517.26535	1032.51615	-1.1895	-0.00061527	0.039378	2.0369E-05	-1.1501	-0.0005949	517.2654532332655	25.409	0.81498	26.053	25.668	26.483	0.64368					35	15	3	0	0	0	0.010788	1	8474	8474		129.77	64.537	1	33188000			1676	2507	1048	1062	1664	1664		110			0.0011897075178239902
AETEPIVKM	9	Unmodified	_AETEPIVKM_					0	0	0		ENST00000518442.5_1_8:109247181-109261015:-|nuORF;ENSG00000104408|ENST00000220849|EIF3E	ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENST00000518442.5_1_8:109247181-109261015:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	509.13739013671875	2	509.267893	1016.52123	-0.17715	-9.0218E-05	0.012932	6.5861E-06	-0.16422	-8.3632E-05	509.2678911257689	45.528	0.96148	45.528	45.03	45.992	0					33	18	2	0	0	0	0.011107	1	15902	15902		110.67	54.498	1	12999000			1677	2507	1048	1063	1665	1665					0.013632746144025987
AETEPIVKM	9	Unmodified	_AETEPIVKM_					0	0	0		ENST00000518442.5_1_8:109247181-109261015:-|nuORF;ENSG00000104408|ENST00000220849|EIF3E	ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENST00000518442.5_1_8:109247181-109261015:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	509.6672668457031	2	509.267893	1016.52123	-0.86187	-0.00043892	0.31026	0.000158	-0.55161	-0.00028092	509.2681110231838	44.715	0.96619	45.484	45.035	46.001	0.7691					46	18	4	0	0	0	0.011236	1	16652	16652		129.77	40.818	1	14886000			1678	2507	1048	1063	1666	1666					0.013632746144025987
AETEPLHKL	9	Unmodified	_AETEPLHKL_					0	0	0			REV__ENSG00000110448|ENST00000347785|CD5	REV__ENSG00000110448|ENST00000347785|CD5	MULTI-SECPEP	A375_MHC_IP_R1	1	518.9713134765625	2	519.284931	1036.55531	-0.06206	-3.2227E-05	-0.99356	-0.00051594	-1.0556	-0.00054817	519.2844659745102	45.177	0.3546	45.177	44.98	45.334	0					10	6	2	0	0	0	0.78798	1	15793	15793		1.6526	0.32309	1	1766600	+		1679	17629	1049	1064	1667	1667					0.03849439097643881
AETGGSDYSH	10	Unmodified	_AETGGSDYSH_					0	0	0		nc|ENSG00000150510|Q86V42-2|FAM124A;ENSG00000150510|ENST00000322475|FAM124A;nc|ENSG00000150510|Q86V42-3|FAM124A	nc|ENSG00000150510|Q86V42-2|FAM124A	nc|ENSG00000150510|Q86V42-2|FAM124A	MULTI-MSMS	A375_MHC_IP_R2	2	513.1686401367188	2	512.204335	1022.39412	-0.78201	-0.00040055	-0.28873	-0.00014789	-1.0707	-0.00054844	512.2040397148107	31.379	0.81529	32.097	31.821	32.636	0.71857					47	15	5	0	0	0	0.71245	1	11162	11162		6.7232	6.7232	1	27312000			1680	5847	1050	1065	1668	1668					-0.11618355006226011
AETGGSDYSH	10	Unmodified	_AETGGSDYSH_					0	0	0		nc|ENSG00000150510|Q86V42-2|FAM124A;ENSG00000150510|ENST00000322475|FAM124A;nc|ENSG00000150510|Q86V42-3|FAM124A	nc|ENSG00000150510|Q86V42-2|FAM124A	nc|ENSG00000150510|Q86V42-2|FAM124A	MULTI-MATCH	A375_MHC_IP_R1	1		2	512.204335	1022.39412	-0.50795	-0.00026018	-0.30152	-0.00015444	-0.80948	-0.00041462	512.2040395290655	31.934	0.91759	31.934	31.667	32.585	0	-0.081761	-6.757E-06	NaN	6.7232	48	17	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29525000			1681	5847	1050	1065							-0.11618355006226011
AETGLVGRYF	10	Unmodified	_AETGLVGRYF_					0	0	0		nc|ENSG00000240184|Q9UN70-2|PCDHGC3;ENSG00000240184|ENST00000308177|PCDHGC3	nc|ENSG00000240184|Q9UN70-2|PCDHGC3	nc|ENSG00000240184|Q9UN70-2|PCDHGC3	MULTI-MSMS	A375_MHC_IP_R1	1	557.1900024414062	2	556.790381	1111.56621	-0.56136	-0.00031256	0.064421	3.5869E-05	-0.49694	-0.00027669	556.7904094690944	75.747	0.60275	75.747	75.464	76.067	0					32	11	4	0	0	0	0.011483	1	27579	27579		148.27	90.546	1	16110000			1682	9771	1051	1066	1669	1669					0.014888414719507637
AETGLVGRYF	10	Unmodified	_AETGLVGRYF_					0	0	0		nc|ENSG00000240184|Q9UN70-2|PCDHGC3;ENSG00000240184|ENST00000308177|PCDHGC3	nc|ENSG00000240184|Q9UN70-2|PCDHGC3	nc|ENSG00000240184|Q9UN70-2|PCDHGC3	MULTI-MSMS	A375_MHC_IP_R2	2	557.1895751953125	2	556.790381	1111.56621	-0.82943	-0.00046182	0.15946	8.8788E-05	-0.66996	-0.00037303	556.7904633379835	74.923	0.65746	75.66	75.315	75.973	0.73752					29	12	3	0	0	0	0.0022803	1	28411	28411		173.69	113.61	1	11818000			1683	9771	1051	1066	1670	1670					0.014888414719507637
AETGQVQKI	9	Unmodified	_AETGQVQKI_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	A375_MHC_IP_R1	1	487.6690979003906	2	487.269281	972.52401	-0.39827	-0.00019406	0.29915	0.00014577	-0.099123	-4.8299E-05	487.2693926710068	23.308	0.30686	23.308	23.176	23.483	0					12	5	3	0	0	0	0.019499	1	6380	6380		103.42	21.529	1	15439000			1684	5230	1052	1067	1671	1671					0.03664866063570571
AETGSVKDF	9	Unmodified	_AETGSVKDF_					0	0	0		ENSG00000253719|ENST00000519948|ATXN7L3B	ENSG00000253719|ENST00000519948|ATXN7L3B	ENSG00000253719|ENST00000519948|ATXN7L3B	MULTI-MSMS	A375_MHC_IP_R1	1	477.6320495605469	2	477.232364	952.450176	-0.71525	-0.00034134	0.38902	0.00018565	-0.32623	-0.00015569	477.2325202978863	28.012	0.40167	28.012	27.836	28.238	0					17	7	3	0	0	0	0.02331	1	8589	8589		80.676	42.5	1	9404400			1685	9865	1053	1068	1672	1672					-0.02795102098764346
AETGSVKDF	9	Unmodified	_AETGSVKDF_					0	0	0		ENSG00000253719|ENST00000519948|ATXN7L3B	ENSG00000253719|ENST00000519948|ATXN7L3B	ENSG00000253719|ENST00000519948|ATXN7L3B	MULTI-MSMS	A375_MHC_IP_R2	2	477.6320495605469	2	477.232364	952.450176	-0.45568	-0.00021747	-0.33133	-0.00015812	-0.78701	-0.00037559	477.23212390534974	27.394	0.40657	28.073	27.895	28.301	0.67857					12	7	2	0	0	0	0.030891	1	9367	9367		74.2	36.024	1	6580300			1686	9865	1053	1068	1673	1673					-0.02795102098764346
AETHIVLLF	9	Unmodified	_AETHIVLLF_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	MULTI-SECPEP	A375_MHC_IP_R1	1	522.2000122070312	2	521.800217	1041.58588	-0.24716	-0.00012897	-0.10552	-5.5061E-05	-0.35268	-0.00018403	521.8000746312908	108.79	0.6057	108.79	108.51	109.12	0					24	11	3	0	0	0	0.47368	1	39890	39890		26.884	0	1	4599300			1687	2360	1054	1069	1674	1674					0.0667521748271156
AETHIVLLF	9	Unmodified	_AETHIVLLF_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	MULTI-SECPEP	A375_MHC_IP_R2	2	522.2000122070312	2	521.800217	1041.58588	-0.62721	-0.00032728	-0.059698	-3.115E-05	-0.68691	-0.00035843	521.8001440660963	107.82	0.56258	108.58	108.25	108.81	0.75436					24	10	3	0	0	0	0.39388	1	40695	40695		39.957	9.7325	1	4743700			1688	2360	1054	1069	1675	1675					0.0667521748271156
AETIAWVR	8	Unmodified	_AETIAWVR_					0	0	0		ENSG00000218305|ENST00000650262|CDC14C;nc|ENSG00000081377|O60729-2|CDC14B;nc|ENSG00000081377|O60729-5|CDC14B;nc|ENSG00000081377|O60729-3|CDC14B;nc|ENSG00000081377|O60729-4|CDC14B;ENSG00000081377|ENST00000375241|CDC14B	ENSG00000218305|ENST00000650262|CDC14C	ENSG00000218305|ENST00000650262|CDC14C	MSMS	A375_MHC_IP_R2	2	473.189697265625	2	473.261259	944.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.769	1	47.53	47.03	48.03	0.76128								0	0	0	0.16876	1	17523	17523		13.508	0.97634	1				1689	1737	1055	1070	1676	1676					0.03349204617336454
AETILKNNI	9	Unmodified	_AETILKNNI_					0	0	0		nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1	nc|ENSG00000124214|O95793-2|STAU1	nc|ENSG00000124214|O95793-2|STAU1	MULTI-SECPEP	A375_MHC_IP_R1	1	507.9801330566406	2	508.292756	1014.57096	-0.41312	-0.00020998	-0.28863	-0.00014671	-0.70175	-0.00035669	508.29272378454624	43.967	0.35611	43.967	43.757	44.113	0					10	6	2	0	0	0	0.59098	1	15344	15344		27.629	7.2143	1	1722900			1690	3885	1056	1071	1677	1677					0.06425725614712974
AETILKNNI	9	Unmodified	_AETILKNNI_					0	0	0		nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1	nc|ENSG00000124214|O95793-2|STAU1	nc|ENSG00000124214|O95793-2|STAU1	MULTI-SECPEP	A375_MHC_IP_R2	2	508.0068054199219	2	508.292756	1014.57096	-0.62597	-0.00031818	-0.57109	-0.00029028	-1.1971	-0.00060846	508.7940360834612	43.185	0.30418	43.958	43.775	44.079	0.7724					9	5	2	0	0	0	0.65527	1	16070	16070		22.736	2.3217	1	1627900			1691	3885	1056	1071	1678	1678					0.06425725614712974
AETITTHYL	9	Unmodified	_AETITTHYL_					0	0	0		nc|ENSG00000100196|O43731-2|KDELR3;ENSG00000100196|ENST00000216014|KDELR3;ENSG00000136240|ENST00000258739|KDELR2	nc|ENSG00000100196|O43731-2|KDELR3	nc|ENSG00000100196|O43731-2|KDELR3	MULTI-SECPEP	A375_MHC_IP_R2	2	524.6771850585938	2	524.769114	1047.52368	-0.74006	-0.00038836	-0.20785	-0.00010907	-0.94791	-0.00049743	524.7691250109865	49.974	0.56043	50.728	50.497	51.057	0.75406					14	10	2	0	0	0	0.061132	1	18792	18792		57.471	17.522	1	2028700			1692	2130	1057	1072	1679	1679					0.0018144634370855783
AETLIFVKY	9	Unmodified	_AETLIFVKY_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-SECPEP	A375_MHC_IP_R1	1	542.7076416015625	2	542.307875	1082.6012	-0.62585	-0.0003394	0.39003	0.00021151	-0.23583	-0.00012789	542.3078048405199	87.67	0.66062	87.67	87.289	87.949	0					26	12	3	0	0	0	0.011004	1	32137	32137		147.06	101.36	1	6389600			1693	3357	1058	1073	1680	1680					0.06320084279923321
AETLIFVKY	9	Unmodified	_AETLIFVKY_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-SECPEP	A375_MHC_IP_R2	2	542.70751953125	2	542.307875	1082.6012	-0.7025	-0.00038097	0.46727	0.00025341	-0.23523	-0.00012757	542.3080194609065	86.83	0.60786	87.563	87.255	87.863	0.733					26	11	3	0	0	0	0.021951	1	33013	33013		139.14	84.365	1	6564200			1694	3357	1058	1073	1681	1681					0.06320084279923321
AETLLSSLL	9	Unmodified	_AETLLSSLL_					0	0	0		nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;ENST00000549897.1_1_12:58087944-58088778:+|nuORF;ENST00000550793.1_1_12:58087944-58089649:+|nuORF;ENST00000553208.5_1_12:58087944-58109621:+|nuORF	nc|ENSG00000135506|Q13438-4|OS9	nc|ENSG00000135506|Q13438-4|OS9	MULTI-SECPEP	A375_MHC_IP_R1	1	474.1762390136719	2	473.776408	945.538263	-0.68222	-0.00032322	0.98117	0.00046486	0.29895	0.00014164	473.77678724803536	129.98	0.20207	129.98	129.85	130.06	0					8	3	3	0	0	0	0.14105	1	50025	50025		60.39	15.983	1	9282200			1695	4691	1059	1074	1682	1682					0.06331518491856514
AETLLSSLL	9	Unmodified	_AETLLSSLL_					0	0	0		nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;ENST00000549897.1_1_12:58087944-58088778:+|nuORF;ENST00000550793.1_1_12:58087944-58089649:+|nuORF;ENST00000553208.5_1_12:58087944-58109621:+|nuORF	nc|ENSG00000135506|Q13438-4|OS9	nc|ENSG00000135506|Q13438-4|OS9	MULTI-MSMS	A375_MHC_IP_R2	2	474.1763610839844	2	473.776408	945.538263	-0.58975	-0.00027941	0.33354	0.00015802	-0.25621	-0.00012138	473.77652752834103	129.72	0.15276	129.93	129.84	130	0.21419					4	2	2	0	0	0	0.0094266	1	50999	50999		97.075	36.685	1	4488300			1696	4691	1059	1074	1683	1683					0.06331518491856514
AETLPALKI	9	Unmodified	_AETLPALKI_					0	0	0		ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MSMS	A375_MHC_IP_R1	1	478.6943359375	2	478.294768	954.574983	-0.3611	-0.00017271	0.016202	7.7494E-06	-0.3449	-0.00016496	478.2946833945013	79.269	0.66475	79.269	78.909	79.574	0					25	12	3	0	0	0	0.11629	1	28924	28924		47.749	23.728	1	2890200			1697	5039	1060	1075	1684	1684					0.09587815108409359
AETLPALKI	9	Unmodified	_AETLPALKI_					0	0	0		ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MATCH	A375_MHC_IP_R2	2		2	478.294768	954.574983	-0.50719	-0.00024259	-0.41769	-0.00019978	-0.92488	-0.00044237	478.29465273212406	78.387	0.55861	79.132	78.828	79.387	0.74474	-0.068959	-0.00024838	NaN	47.749	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2443100			1698	5039	1060	1075							0.09587815108409359
AETMVYFL	8	Unmodified	_AETMVYFL_					0	0	0			REV__ENST00000444292.2_1_X:95228575-95229244:-|nuORF	REV__ENST00000444292.2_1_X:95228575-95229244:-|nuORF	MSMS	A375_MHC_IP_R2	2	486.968994140625	2	487.238604	972.462655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.942	1	19.545	19.045	20.045	0.60308								0	0	0	0.16876	1	5689	5689		5.7604	0	1		+		1699	18942	1061	1076	1685	1685					-0.02467781960069715
AETPARPGL	9	Unmodified	_AETPARPGL_					0	0	0		ENSG00000111252|ENST00000341259|SH2B3	ENSG00000111252|ENST00000341259|SH2B3	ENSG00000111252|ENST00000341259|SH2B3	MULTI-MSMS	A375_MHC_IP_R2	2	456.6505432128906	2	456.250892	910.48723	-0.21498	-9.8083E-05	-0.048452	-2.2106E-05	-0.26343	-0.00012019	456.2508021456631	27.58	0.60769	28.258	28.098	28.706	0.67857					14	11	2	0	0	0	0.29981	1	9520	9520		30.637	6.616	1	2568600			1700	2975	1062	1077	1686	1686					0.028406142376638854
AETPARPGL	9	Unmodified	_AETPARPGL_					0	0	0		ENSG00000111252|ENST00000341259|SH2B3	ENSG00000111252|ENST00000341259|SH2B3	ENSG00000111252|ENST00000341259|SH2B3	MULTI-MATCH	A375_MHC_IP_R1	1		2	456.250892	910.48723	-0.36519	-0.00016662	-0.018155	-8.2832E-06	-0.38334	-0.0001749	456.2508429307023	28.163	0.40295	28.163	27.987	28.39	0	-0.04776	9.5365E-06	NaN	30.637	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3376400			1701	2975	1062	1077							0.028406142376638854
AETPDIKLF	9	Unmodified	_AETPDIKLF_					0	0	0		ENST00000598807.1_1_19:58899504-58905010:+|nuORF;ENSG00000083845|ENST00000196551|RPS5;ENST00000599909.1_1_19:58899504-58899627:+|nuORF	ENST00000598807.1_1_19:58899504-58905010:+|nuORF	ENST00000598807.1_1_19:58899504-58905010:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	517.6815185546875	2	517.281857	1032.54916	-0.63444	-0.00032818	0.41058	0.00021239	-0.22386	-0.0001158	517.2820977799784	65.119	2.3402	65.119	64.495	66.836	0					107	45	3	0	0	0	0.44024	2	23454	23454;23892		22.736	4.5899	1	11976000			1702	1790	1063	1078	1687;1688	1687					0.034189208661246084
AETPDIKLF	9	Unmodified	_AETPDIKLF_					0	0	0		ENST00000598807.1_1_19:58899504-58905010:+|nuORF;ENSG00000083845|ENST00000196551|RPS5;ENST00000599909.1_1_19:58899504-58899627:+|nuORF	ENST00000598807.1_1_19:58899504-58905010:+|nuORF	ENST00000598807.1_1_19:58899504-58905010:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	519.835693359375	2	517.281857	1032.54916	-0.70354	-0.00036393	-0.26214	-0.0001356	-0.96568	-0.00049953	517.2818036461775	86.597	2.7975	86.597	86.121	88.919	0					171	54	6	0	0	0	0.51106	1	31794	31794		19.257	5.3509	1	1347500000			1703	1790	1063	1078	1689	1689					0.034189208661246084
AETPDIKLF	9	Unmodified	_AETPDIKLF_					0	0	0		ENST00000598807.1_1_19:58899504-58905010:+|nuORF;ENSG00000083845|ENST00000196551|RPS5;ENST00000599909.1_1_19:58899504-58899627:+|nuORF	ENST00000598807.1_1_19:58899504-58905010:+|nuORF	ENST00000598807.1_1_19:58899504-58905010:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	517.6818237304688	2	517.281857	1032.54916	-0.69782	-0.00036097	0.14034	7.2595E-05	-0.55748	-0.00028838	517.2819487419068	64.263	2.7476	65.003	64.394	67.142	0.74023					112	53	3	0	0	0	0.12771	1	24452	24452		45.7	1.8413	1	10989000			1704	1790	1063	1078	1690	1690					0.034189208661246084
AETPDIKLF	9	Unmodified	_AETPDIKLF_					0	0	0		ENST00000598807.1_1_19:58899504-58905010:+|nuORF;ENSG00000083845|ENST00000196551|RPS5;ENST00000599909.1_1_19:58899504-58899627:+|nuORF	ENST00000598807.1_1_19:58899504-58905010:+|nuORF	ENST00000598807.1_1_19:58899504-58905010:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	517.6819458007812	2	517.281857	1032.54916	-0.56803	-0.00029383	-0.35531	-0.00018379	-0.92334	-0.00047763	517.2817469997913	85.799	2.8954	86.535	86.034	88.929	0.73602					172	56	6	0	0	0	0.018261	4	32972	32972;33091;33115;33131		85.642	24.284	1	1416900000			1705	1790	1063	1078	1691;1692;1693;1694	1691					0.034189208661246084
AETQILTDW	9	Unmodified	_AETQILTDW_					0	0	0		ENSG00000171148|ENST00000301964|TADA3;nc|ENSG00000171148|O75528-2|TADA3	ENSG00000171148|ENST00000301964|TADA3	ENSG00000171148|ENST00000301964|TADA3	MULTI-MSMS	A375_MHC_IP_R1	1	538.6803588867188	2	538.766571	1075.51859	-0.63146	-0.00034021	0.22527	0.00012137	-0.40619	-0.00021884	538.7668690787842	104.35	0.56058	104.35	104.08	104.64	0					22	10	3	0	0	0	0.10622	1	38366	38366		49.554	9.3151	1	1743100			1706	7577	1064	1079	1695	1695					-0.016148575188935865
AETQILTDW	9	Unmodified	_AETQILTDW_					0	0	0		ENSG00000171148|ENST00000301964|TADA3;nc|ENSG00000171148|O75528-2|TADA3	ENSG00000171148|ENST00000301964|TADA3	ENSG00000171148|ENST00000301964|TADA3	MULTI-SECPEP	A375_MHC_IP_R2	2	539.166259765625	2	538.766571	1075.51859	-0.82822	-0.00044622	0.58811	0.00031685	-0.24012	-0.00012937	538.7667836008511	103.6	0.50703	104.36	104.09	104.6	0.76428					19	9	3	0	0	0	0.14572	1	39242	39242		53.833	13.883	1	1443300			1707	7577	1064	1079	1696	1696					-0.016148575188935865
AETRAGLTL	9	Unmodified	_AETRAGLTL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-SECPEP	A375_MHC_IP_R1	1	465.6980895996094	2	466.263999	930.513445	-0.4446	-0.0002073	-0.2145	-0.00010002	-0.65911	-0.00030732	466.2639662733276	41.802	0.41086	41.802	41.571	41.982	0					14	7	2	0	0	0	0.14554	1	14436	14436		57.249	0	1	2909300			1708	2432	1065	1080	1697	1697					0.04540883409140406
AETSYVKV	8	Unmodified	_AETSYVKV_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;ENSG00000156009|ENST00000286482|MAGEA8;ENSG00000198681|ENST00000356661|MAGEA1	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;ENSG00000198681|ENST00000356661|MAGEA1	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-SECPEP	A375_MHC_IP_R1	1	449.1397399902344	2	448.739825	895.465098	-0.27964	-0.00012548	0.12317	5.5272E-05	-0.15646	-7.0212E-05	448.7398220861029	32.313	0.60901	32.313	32.075	32.684	0					22	11	3	0	0	0	0.23546	1	10416	10416		85.272	34.417	1	6427900			1709	520;9298	1066	1081	1698	1698					0.01318389769244277
AETSYVKV	8	Unmodified	_AETSYVKV_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;ENSG00000156009|ENST00000286482|MAGEA8;ENSG00000198681|ENST00000356661|MAGEA1	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;ENSG00000198681|ENST00000356661|MAGEA1	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-SECPEP	A375_MHC_IP_R2	2	449.1395568847656	2	448.739825	895.465098	-0.33738	-0.0001514	0.10521	4.7213E-05	-0.23217	-0.00010418	448.739839051913	31.584	0.50859	32.32	32.144	32.653	0.73552					21	9	3	0	0	0	0.20774	1	11185	11185		92.491	56.447	1	6861700			1710	520;9298	1066	1081	1699	1699					0.01318389769244277
AETSYVKVL	9	Unmodified	_AETSYVKVL_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;ENSG00000156009|ENST00000286482|MAGEA8;ENSG00000198681|ENST00000356661|MAGEA1	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;ENSG00000198681|ENST00000356661|MAGEA1	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-MSMS	A375_MHC_IP_R1	1	505.68145751953125	2	505.281857	1008.54916	-0.18233	-9.213E-05	-0.096845	-4.8934E-05	-0.27918	-0.00014106	505.2818191848767	53.937	1.2667	53.937	53.555	54.822	0					62	24	4	0	0	0	0.0037351	1	19184	19184		137.42	89.078	1	155490000			1711	520;9298	1067	1082	1700	1700					0.0452292086615671
AETSYVKVL	9	Unmodified	_AETSYVKVL_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;ENSG00000156009|ENST00000286482|MAGEA8;ENSG00000198681|ENST00000356661|MAGEA1	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;ENSG00000198681|ENST00000356661|MAGEA1	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-MSMS	A375_MHC_IP_R2	2	505.6810302734375	2	505.281857	1008.54916	-1.2736	-0.00064352	0.19815	0.00010012	-1.0754	-0.00054339	505.2819415657394	53.117	1.4299	53.868	53.436	54.866	0.75105					68	27	5	0	0	0	0.010055	1	19965	19965		125.53	81.671	1	131900000			1712	520;9298	1067	1082	1701	1701					0.0452292086615671
AETVQTVRY	9	Unmodified	_AETVQTVRY_					0	0	0		ENSG00000133104|ENST00000438666|SPART;ENST00000460126.5_1_13:36882565-36886495:-|nuORF;ENST00000491805.5_1_13:36878504-36886627:-|nuORF	ENSG00000133104|ENST00000438666|SPART	ENSG00000133104|ENST00000438666|SPART	MULTI-SECPEP	A375_MHC_IP_R1	1	534.1795654296875	2	533.780013	1065.54547	-0.88248	-0.00047105	0.058084	3.1004E-05	-0.82439	-0.00044005	533.7800167493394	30.864	0.70909	30.864	30.603	31.312	0					38	13	4	0	0	0	0.011357	1	9821	9821		125.53	59.072	1	20072000			1713	4486	1068	1083	1702	1702					0.015322510922942456
AETVQTVRY	9	Unmodified	_AETVQTVRY_					0	0	0		ENSG00000133104|ENST00000438666|SPART;ENST00000460126.5_1_13:36882565-36886495:-|nuORF;ENST00000491805.5_1_13:36878504-36886627:-|nuORF	ENSG00000133104|ENST00000438666|SPART	ENSG00000133104|ENST00000438666|SPART	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1793823242188	2	533.780013	1065.54547	-0.81968	-0.00043753	0.07176	3.8304E-05	-0.74792	-0.00039922	533.7799816985132	30.255	0.7093	30.973	30.658	31.367	0.71857					39	13	4	0	0	0	0.011031	1	10589	10589		140.63	74.176	1	22027000			1714	4486	1068	1083	1703	1703					0.015322510922942456
AEVAAEKSF	9	Unmodified	_AEVAAEKSF_					0	0	0		ENSG00000086589|ENST00000199814|RBM22;nc|ENSG00000086589|Q9NW64-2|RBM22;ENST00000520132.1_1_5:150071315-150073858:-|nuORF	ENSG00000086589|ENST00000199814|RBM22	ENSG00000086589|ENST00000199814|RBM22	MULTI-MSMS	A375_MHC_IP_R1	1	476.6424255371094	2	476.242732	950.470912	-0.65836	-0.00031354	0.17889	8.5193E-05	-0.47947	-0.00022834	476.24275192870283	28.856	0.81123	28.856	28.592	29.403	0					36	15	4	0	0	0	0.0098082	1	8923	8923		114.19	61.918	1	50447000			1715	1839	1069	1084	1704	1704					-0.006305117191004683
AEVAAEKSF	9	Unmodified	_AEVAAEKSF_					0	0	0		ENSG00000086589|ENST00000199814|RBM22;nc|ENSG00000086589|Q9NW64-2|RBM22;ENST00000520132.1_1_5:150071315-150073858:-|nuORF	ENSG00000086589|ENST00000199814|RBM22	ENSG00000086589|ENST00000199814|RBM22	MULTI-SECPEP	A375_MHC_IP_R2	2	476.6421813964844	2	476.242732	950.470912	-0.80949	-0.00038551	0.01414	6.734E-06	-0.79535	-0.00037878	476.2426926267889	28.204	0.55836	28.883	28.655	29.214	0.67857					30	10	4	0	0	0	0.013536	1	9697	9697		121.35	67.513	1	49987000			1716	1839	1069	1084	1705	1705					-0.006305117191004683
AEVAEHVQY	9	Unmodified	_AEVAEHVQY_					0	0	0		ENSG00000112312|ENST00000230056|GMNN	ENSG00000112312|ENST00000230056|GMNN	ENSG00000112312|ENST00000230056|GMNN	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1953125	2	523.251089	1044.48762	-0.83023	-0.00043442	0.64622	0.00033813	-0.18402	-9.6288E-05	523.2509812447868	30.192	0.5539	30.192	29.999	30.553	0					24	10	5	0	0	0	0.50484	1	9560	9560		34.932	21.89	1	8687200			1717	3076	1070	1085	1706	1706					-0.032840108331583906
AEVAGQFVI	9	Unmodified	_AEVAGQFVI_					0	0	0		ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	MULTI-SECPEP	A375_MHC_IP_R1	1	467.6554870605469	2	467.255643	932.496732	-0.29903	-0.00013972	0.32819	0.00015335	0.029158	1.3624E-05	467.2557187919542	95.946	0.91338	95.946	95.565	96.478	0					39	17	3	0	0	0	0.059859	1	35232	35232		81.89	28.315	1	6587100			1718	1534	1071	1086	1707	1707					0.027783825231722403
AEVAGQFVI	9	Unmodified	_AEVAGQFVI_					0	0	0		ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	MULTI-SECPEP	A375_MHC_IP_R2	2	467.6561279296875	2	467.255643	932.496732	-0.38502	-0.0001799	0.46726	0.00021833	0.082237	3.8426E-05	467.25584132758155	95.139	0.86456	95.89	95.533	96.398	0.75045					36	16	3	0	0	0	0.11436	1	36103	36103		68.081	30.107	1	7045100			1719	1534	1071	1086	1708	1708					0.027783825231722403
AEVDDRSY	8	Unmodified	_AEVDDRSY_					0	0	0		ENST00000562354.2_1_16:31718295-31719595:+|nuORF	ENST00000562354.2_1_16:31718295-31719595:+|nuORF	ENST00000562354.2_1_16:31718295-31719595:+|nuORF	MSMS	A375_MHC_IP_R1	1	477.6502380371094	2	477.711796	953.40904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.093	1	36.093	35.593	36.593	0								0	0	0	0.16876	1	12052	12052		9.3474	0	1				1720	13517	1072	1087	1709	1709					-0.06952863138235443
AEVDKVTGRF	10	Unmodified	_AEVDKVTGRF_					0	0	0		ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	MULTI-MSMS	A375_MHC_IP_R1	1	374.93670654296875	3	374.536501	1120.58767	0.31749	0.00011891	-0.108	-4.0448E-05	0.2095	7.8464E-05	374.5364736510869	31.895	1.2206	31.895	31.565	32.785	0					76	23	5	0	0	0	0.048243	1	10215	10215		76.416	44.78	1	344880000			1721	7651	1073	1088	1710	1710					0.03220226500661738
AEVDKVTGRF	10	Unmodified	_AEVDKVTGRF_					0	0	0		ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	MULTI-SECPEP	A375_MHC_IP_R1	1	561.179931640625	2	561.301113	1120.58767	-0.48052	-0.00026972	0.078277	4.3937E-05	-0.40224	-0.00022578	561.3011452118196	31.895	0.61472	31.895	31.667	32.282	0					35	11	4	0	0	0	0.017081	1	10244	10244		121.93	92.493	1	80867000			1722	7651	1073	1088	1711	1711					0.03220226500661738
AEVDKVTGRF	10	Unmodified	_AEVDKVTGRF_					0	0	0		ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	MULTI-MSMS	A375_MHC_IP_R2	2	374.9364929199219	3	374.536501	1120.58767	0.29908	0.00011202	-0.361	-0.00013521	-0.061922	-2.3192E-05	374.5363502858005	31.179	1.1689	31.897	31.567	32.736	0.71857					73	22	5	0	0	0	0.10407	1	10970	10970		62.78	26.385	1	297250000			1723	7651	1073	1088	1712	1712					0.03220226500661738
AEVDKVTGRF	10	Unmodified	_AEVDKVTGRF_					0	0	0		ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	MULTI-SECPEP	A375_MHC_IP_R2	2	561.130615234375	2	561.301113	1120.58767	-0.63725	-0.00035769	-0.020186	-1.133E-05	-0.65743	-0.00036902	561.301089690091	31.179	0.56109	31.897	31.618	32.18	0.71857					36	10	5	0	0	0	0.023081	1	10984	10984		108.26	66.422	1	56396000			1724	7651	1073	1088	1713	1713					0.03220226500661738
AEVDTRESL	9	Unmodified	_AEVDTRESL_					0	0	0		ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-SECPEP	A375_MHC_IP_R2	2	510.97369384765625	2	510.253828	1018.4931	-1.054	-0.0005378	0.0099115	5.0574E-06	-1.0441	-0.00053275	510.25387797682316	28.252	0.60944	28.931	28.604	29.214	0.67857					21	11	3	0	0	0	0.10495	1	9762	9762		74.2	22.57	1	6282000			1725	1066	1074	1089	1714	1714					-0.015403320413270194
AEVDTRESL	9	Unmodified	_AEVDTRESL_					0	0	0		ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MATCH	A375_MHC_IP_R1	1		2	510.253828	1018.4931	-0.58132	-0.00029662	-0.55516	-0.00028327	-1.1365	-0.0005799	510.25361922080305	28.85	0.65989	28.85	28.541	29.201	0	-0.040464	-0.00024503	NaN	74.2	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6997700			1726	1066	1074	1089							-0.015403320413270194
AEVDTVRRAL	10	Unmodified	_AEVDTVRRAL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R1	1	377.61566162109375	3	377.21565	1128.62512	0.39052	0.00014731	-0.31106	-0.00011734	0.079459	2.9973E-05	377.21551675907364	33.576	0.45425	33.576	33.393	33.848	0					19	8	3	0	0	0	0.54537	1	11001	11001		24.957	5.8131	1	7232000			1727	14788	1075	1090	1715	1715					0.06595317766277731
AEVDTVRRAL	10	Unmodified	_AEVDTVRRAL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R2	2	377.6155700683594	3	377.21565	1128.62512	0.11791	4.4477E-05	-0.15904	-5.9994E-05	-0.041136	-1.5517E-05	377.2155531898936	32.821	0.5089	33.558	33.367	33.876	0.73692					23	9	4	0	0	0	0.42123	1	11720	11720		32.898	3.4606	1	5374300			1728	14788	1075	1090	1716	1716					0.06595317766277731
AEVDVTRDI	9	Unmodified	_AEVDVTRDI_					0	0	0		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MULTI-SECPEP	A375_MHC_IP_R1	1	509.66357421875	2	509.264196	1016.51384	-0.19258	-9.8073E-05	-0.41028	-0.00020894	-0.60286	-0.00030701	509.263912760123	48.011	0.4042	48.011	47.768	48.173	0					18	7	3	0	0	0	0.40495	1	16912	16912		44.392	9.4599	1	3118600			1729	4570	1076	1091	1717	1717					0.006242583383254896
AEVEGAGVKAW	11	Unmodified	_AEVEGAGVKAW_					0	0	0		ENST00000491911.5_1_9:140508423-140509541:+|nuORF;ENSG00000197070|ENST00000371421|ARRDC1	ENST00000491911.5_1_9:140508423-140509541:+|nuORF	ENST00000491911.5_1_9:140508423-140509541:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	559.6888427734375	2	558.787838	1115.56112	-0.68581	-0.00038322	0.43036	0.00024048	-0.25545	-0.00014274	558.7879808800024	45.762	0.65404	46.527	46.201	46.855	0.76519					32	12	3	0	0	0	0.42429	1	17096	17096		37.075	9.4458	1	21985000			1730	9112	1077	1092	1718	1718					0.007965376093352461
AEVELASRV	9	Unmodified	_AEVELASRV_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R1	1	487.3151550292969	2	487.269281	972.52401	-0.58324	-0.0002842	0.099981	4.8718E-05	-0.48326	-0.00023548	487.26936837057764	41.648	0.35749	41.648	41.419	41.777	0					15	6	3	0	0	0	0.14659	1	14339	14339		42.312	7.9108	1	4290000			1731	14788	1078	1093	1719	1719					0.03664866063559202
AEVELASRV	9	Unmodified	_AEVELASRV_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R2	2	487.6775817871094	2	487.269281	972.52401	-0.79224	-0.00038603	-0.6694	-0.00032618	-1.4616	-0.00071221	487.2690948625675	40.841	0.45905	41.615	41.386	41.845	0.77451					18	8	3	0	0	0	0.41731	1	15116	15116		35.612	6.5307	1	2864600			1732	14788	1078	1093	1720	1720					0.03664866063559202
AEVELSARRL	10	Unmodified	_AEVELSARRL_					0	0	0		nc|ENSG00000161618|Q8IZ83-3|ALDH16A1;ENSG00000161618|ENST00000293350|ALDH16A1;ENST00000599652.5_1_19:49969097-49972327:+|nuORF	nc|ENSG00000161618|Q8IZ83-3|ALDH16A1	nc|ENSG00000161618|Q8IZ83-3|ALDH16A1	MULTI-MSMS	A375_MHC_IP_R1	1	382.2874450683594	3	381.887533	1142.64077	0.52297	0.00019972	-0.35199	-0.00013442	0.17098	6.5296E-05	381.8873769054449	35.546	0.61274	35.546	35.269	35.881	0					32	11	4	0	0	0	0.046805	1	11797	11797		59.013	14.068	1	42268000			1733	6480	1079	1094	1721	1721					0.07515604283321409
AEVELSARRL	10	Unmodified	_AEVELSARRL_					0	0	0		nc|ENSG00000161618|Q8IZ83-3|ALDH16A1;ENSG00000161618|ENST00000293350|ALDH16A1;ENST00000599652.5_1_19:49969097-49972327:+|nuORF	nc|ENSG00000161618|Q8IZ83-3|ALDH16A1	nc|ENSG00000161618|Q8IZ83-3|ALDH16A1	MULTI-SECPEP	A375_MHC_IP_R1	1	572.727294921875	2	572.327662	1142.64077	-0.067575	-3.8675E-05	-0.21089	-0.0001207	-0.27846	-0.00015937	572.3275694419831	35.546	0.50973	35.546	35.269	35.778	0					25	9	4	0	0	0	0.24526	1	11815	11815		67.081	30.575	1	11924000			1734	6480	1079	1094	1722	1722					0.07515604283321409
AEVELSARRL	10	Unmodified	_AEVELSARRL_					0	0	0		nc|ENSG00000161618|Q8IZ83-3|ALDH16A1;ENSG00000161618|ENST00000293350|ALDH16A1;ENST00000599652.5_1_19:49969097-49972327:+|nuORF	nc|ENSG00000161618|Q8IZ83-3|ALDH16A1	nc|ENSG00000161618|Q8IZ83-3|ALDH16A1	MULTI-SECPEP	A375_MHC_IP_R2	2	572.7275390625	2	572.327662	1142.64077	-0.45632	-0.00026116	-0.084514	-4.837E-05	-0.54083	-0.00030953	572.3276055533173	34.687	0.45483	35.45	35.223	35.677	0.76338					22	8	4	0	0	0	0.31583	1	12521	12521		53.317	23.476	1	7661700			1735	6480	1079	1094	1723	1723					0.07515604283321409
AEVEPGVHL	9	Unmodified	_AEVEPGVHL_					0	0	0		nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;ENSG00000143398|ENST00000368888|PIP5K1A;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF	nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000180764|A2A3N6|PIPSL	nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-SECPEP	A375_MHC_IP_R1	1	476.15020751953125	2	475.750724	949.486896	-0.17525	-8.3376E-05	-0.27854	-0.00013251	-0.45379	-0.00021589	475.75064606251584	48.339	0.60819	48.339	48.02	48.629	0					23	11	3	0	0	0	0.061132	1	17036	17036		77.984	31.963	1	8682400			1736	12500;5384	1080	1095	1724	1724					0.010131945178045498
AEVEPGVHL	9	Unmodified	_AEVEPGVHL_					0	0	0		nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;ENSG00000143398|ENST00000368888|PIP5K1A;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF	nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000180764|A2A3N6|PIPSL	nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-SECPEP	A375_MHC_IP_R2	2	476.15032958984375	2	475.750724	949.486896	-0.37749	-0.00017959	-0.35303	-0.00016796	-0.73052	-0.00034755	475.7505761942146	47.522	0.50959	48.283	47.97	48.48	0.76127					16	9	2	0	0	0	0.061132	1	17798	17798		77.984	27.129	1	8496700			1737	12500;5384	1080	1095	1725	1725					0.010131945178045498
AEVFCRGRDFV	11	Unmodified	_AEVFCRGRDFV_					0	0	0		POLR3E|p.L349F|1|0.23|ENSG00000058600|chr16:22322908-22322908|C/T|missense_variant	POLR3E|p.L349F|1|0.23|ENSG00000058600|chr16:22322908-22322908|C/T|missense_variant	POLR3E|p.L349F|1|0.23|ENSG00000058600|chr16:22322908-22322908|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	433.94818115234375	3	433.548523	1297.62374	-0.51701	-0.00022415	-0.67316	-0.00029185	-1.1902	-0.000516	433.54836487454116	18.854	0.16035	19.457	19.423	19.583	0.60308					9	4	3	0	0	0	0.73378	1	5643	5643		2.4348	0.50728	1	76498000			1738	15206	1081	1096	1726	1726					-0.013166395941425435
AEVFGNGCEPP	11	Unmodified	_AEVFGNGCEPP_					0	0	0			REV__ENSG00000073670|ENST00000200557|ADAM11	REV__ENSG00000073670|ENST00000200557|ADAM11	MULTI-MSMS	A375_MHC_IP_R2	2	560.6419067382812	2	560.242406	1118.47026	-0.60486	-0.00033887	-1.5302	-0.00085726	-2.135	-0.0011961	560.2416536329057	42.006	1.376	42.78	42.35	43.726	0.77451					41	26	3	0	0	0	0.65093	1	15584	15584		19.362	2.249	1	3711700	+		1739	16621	1082	1097	1727	1727					-0.08423674430446226
AEVFKKDKLY	10	Unmodified	_AEVFKKDKLY_					0	0	0			REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	MSMS	A375_MHC_IP_R2	2	620.7469482421875	2	620.850438	1239.68632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.575	1	29.273	28.773	29.773	0.69872								0	0	0	0.15451	1	9882	9882		6.2058	1.6769	1		+		1740	20820	1083	1098	1728	1728					0.07606829745714094
AEVFPLKVF	9	Unmodified	_AEVFPLKVF_					0	0	0		ENSG00000243749|ENST00000373337|TMEM35B	ENSG00000243749|ENST00000373337|TMEM35B	ENSG00000243749|ENST00000373337|TMEM35B	MULTI-SECPEP	A375_MHC_IP_R1	1	525.6780395507812	2	525.305136	1048.59572	-0.2577	-0.00013537	-0.23814	-0.00012509	-0.49583	-0.00026046	525.3049864971276	111.8	1.1217	111.8	111.41	112.53	0					38	21	2	0	0	0	0.042716	1	40948	40948		86.332	57.25	1	76345000			1741	9814	1084	1099	1729	1729					0.07336405488081255
AEVFPLKVF	9	Unmodified	_AEVFPLKVF_					0	0	0		ENSG00000243749|ENST00000373337|TMEM35B	ENSG00000243749|ENST00000373337|TMEM35B	ENSG00000243749|ENST00000373337|TMEM35B	MULTI-MSMS	A375_MHC_IP_R2	2	525.7044677734375	2	525.305136	1048.59572	-0.31788	-0.00016698	-0.074023	-3.8885E-05	-0.3919	-0.00020587	525.3050577487126	110.89	1.1762	111.62	111.24	112.42	0.73692					42	22	2	0	0	0	0.017727	2	41767	41767;41836		86.332	63.183	1	78584000			1742	9814	1084	1099	1730;1731	1730					0.07336405488081255
AEVFSQKHF	9	Unmodified	_AEVFSQKHF_					0	0	0		nc|ENSG00000117153|Q53G59-2|KLHL12;ENSG00000117153|ENST00000367261|KLHL12	nc|ENSG00000117153|Q53G59-2|KLHL12	nc|ENSG00000117153|Q53G59-2|KLHL12	MULTI-SECPEP	A375_MHC_IP_R1	1	365.2525939941406	3	364.853941	1091.53999	-0.028359	-1.0347E-05	-1.8108	-0.00066067	-1.8391	-0.00067102	364.8533395537171	26.874	0.45104	26.874	26.677	27.128	0					21	8	4	0	0	0	0.72623	1	8091	8091		13.615	6.9845	1	4665700			1743	3461	1085	1100	1732	1732					-0.002114276995371256
AEVGELQRRL	10	Unmodified	_AEVGELQRRL_					0	0	0		nc|ENSG00000143367|Q9NNX1-3|TUFT1;nc|ENSG00000143367|Q9NNX1-2|TUFT1;ENSG00000143367|ENST00000368849|TUFT1	nc|ENSG00000143367|Q9NNX1-3|TUFT1	nc|ENSG00000143367|Q9NNX1-3|TUFT1	MULTI-SECPEP	A375_MHC_IP_R1	1	391.2911682128906	3	390.891166	1169.65167	0.11509	4.4987E-05	0.10987	4.2947E-05	0.22496	8.7934E-05	390.8911487069819	34.2	0.45535	34.2	34.001	34.456	0					15	8	2	0	0	0	0.51228	1	11249	11249		42.835	19.034	1	6905800			1744	5374	1086	1101	1733	1733					0.07363006657601545
AEVGELQRRL	10	Unmodified	_AEVGELQRRL_					0	0	0		nc|ENSG00000143367|Q9NNX1-3|TUFT1;nc|ENSG00000143367|Q9NNX1-2|TUFT1;ENSG00000143367|ENST00000368849|TUFT1	nc|ENSG00000143367|Q9NNX1-3|TUFT1	nc|ENSG00000143367|Q9NNX1-3|TUFT1	MULTI-SECPEP	A375_MHC_IP_R2	2	391.2908935546875	3	390.891166	1169.65167	-0.52876	-0.00020669	0.067837	2.6517E-05	-0.46092	-0.00018017	390.89121267656424	33.345	0.5587	34.097	33.891	34.45	0.75225					23	10	3	0	0	0	0.46518	1	11952	11952		46.475	18.242	1	5009900			1745	5374	1086	1101	1734	1734					0.07363006657601545
AEVGFVRFF	9	Unmodified	_AEVGFVRFF_					0	0	0		ENSG00000095002|ENST00000233146|MSH2	ENSG00000095002|ENST00000233146|MSH2	ENSG00000095002|ENST00000233146|MSH2	MULTI-MSMS	A375_MHC_IP_R1	1	536.6842651367188	2	536.284734	1070.55492	-0.34969	-0.00018753	0.19253	0.00010325	-0.15716	-8.4283E-05	536.2847420464936	112.71	0.66057	112.71	112.38	113.04	0					30	12	3	0	0	0	0.032333	2	41275	41275;41420		72.968	49.178	1	7086700			1746	2032	1087	1102	1735;1736	1735					0.02246064168457451
AEVGFVRFF	9	Unmodified	_AEVGFVRFF_					0	0	0		ENSG00000095002|ENST00000233146|MSH2	ENSG00000095002|ENST00000233146|MSH2	ENSG00000095002|ENST00000233146|MSH2	MULTI-MSMS	A375_MHC_IP_R2	2	536.6844482421875	2	536.284734	1070.55492	-0.67099	-0.00035984	0.088732	4.7586E-05	-0.58226	-0.00031226	536.2846822435752	111.82	0.61519	112.55	112.2	112.82	0.72459					27	11	3	0	0	0	0.024574	1	42128	42128		79.596	55.807	1	6716500			1747	2032	1087	1102	1737	1737					0.02246064168457451
AEVGIGNSSF	10	Unmodified	_AEVGIGNSSF_					0	0	0		ENSG00000196757|ENST00000254321|ZNF700	ENSG00000196757|ENST00000254321|ZNF700	ENSG00000196757|ENST00000254321|ZNF700	MULTI-SECPEP	A375_MHC_IP_R1	1	491.1373291015625	2	490.737814	979.461075	-0.63943	-0.00031379	0.23739	0.00011649	-0.40204	-0.0001973	490.7377978100825	68.315	0.61024	68.315	67.955	68.565	0					16	11	2	0	0	0	0.52647	1	24783	24783		47.732	26.195	1	1686200			1748	9081	1088	1103	1738	1738					-0.029476997244614722
AEVGIGNSSF	10	Unmodified	_AEVGIGNSSF_					0	0	0		ENSG00000196757|ENST00000254321|ZNF700	ENSG00000196757|ENST00000254321|ZNF700	ENSG00000196757|ENST00000254321|ZNF700	MULTI-SECPEP	A375_MHC_IP_R2	2	491.127197265625	2	490.737814	979.461075	-0.50949	-0.00025003	0.059196	2.905E-05	-0.4503	-0.00022098	490.73791768256143	67.582	0.55965	68.318	68.052	68.612	0.73631					14	10	2	0	0	0	0.20239	1	25622	25622		55.235	26.748	1	1360300			1749	9081	1088	1103	1739	1739					-0.029476997244614722
AEVGRKLLL	9	Unmodified	_AEVGRKLLL_					0	0	0		ENSG00000186130|ENST00000373659|ZBTB6	ENSG00000186130|ENST00000373659|ZBTB6	ENSG00000186130|ENST00000373659|ZBTB6	MULTI-MSMS	A375_MHC_IP_R1	1	500.22125244140625	2	499.821484	997.628415	-0.11548	-5.7718E-05	-0.26275	-0.00013133	-0.37823	-0.00018905	499.8213572698961	44.344	0.35825	44.344	44.165	44.523	0					11	6	2	0	0	0	0.19747	1	15504	15504		38.176	10.547	1	2028700			1750	8722	1089	1104	1740	1740					0.1295061261095043
AEVGRKLLL	9	Unmodified	_AEVGRKLLL_					0	0	0		ENSG00000186130|ENST00000373659|ZBTB6	ENSG00000186130|ENST00000373659|ZBTB6	ENSG00000186130|ENST00000373659|ZBTB6	MULTI-MATCH	A375_MHC_IP_R2	2		2	499.821484	997.628415	-0.42251	-0.00021118	-0.19236	-9.6146E-05	-0.61487	-0.00030732	499.8213159088688	43.35	0.30511	44.122	43.926	44.231	0.7724	-0.11103	4.9893E-05	NaN	38.176	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1039400			1751	8722	1089	1104							0.1295061261095043
AEVGSCPSSPW	11	Unmodified	_AEVGSCPSSPW_					0	0	0			REV__chr2:223985080-223991803|331|243.54|0.39|9.29|-|0|None,SERPINE2|1	REV__chr2:223985080-223991803|331|243.54|0.39|9.29|-|0|None,SERPINE2|1	MULTI-MSMS	A375_MHC_IP_R1	1	560.2149658203125	2	560.242406	1118.47026	-0.31298	-0.00017535	-1.2757	-0.00071469	-1.5887	-0.00089004	560.2415417898146	42.681	1.6743	42.681	42.285	43.959	0					52	32	2	0	0	0	0.69231	1	14830	14830		16.149	2.2431	1	2916400	+		1752	15734	1090	1105	1741	1741					-0.08423674430446226
AEVGSCPSSPW	11	Unmodified	_AEVGSCPSSPW_					0	0	0			REV__chr2:223985080-223991803|331|243.54|0.39|9.29|-|0|None,SERPINE2|1	REV__chr2:223985080-223991803|331|243.54|0.39|9.29|-|0|None,SERPINE2|1	MULTI-MSMS	A375_MHC_IP_R2	2	560.214599609375	2	560.242406	1118.47026	-0.60486	-0.00033887	-1.5302	-0.00085726	-2.135	-0.0011961	560.2416536329057	42.006	1.376	42.78	42.35	43.726	0.77451					41	26	3	0	0	0	0.67989	1	15542	15542		17.113	1.2657	1	3711700	+		1753	15734	1090	1105	1742	1742					-0.08423674430446226
AEVGVLVGK	9	Unmodified	_AEVGVLVGK_					0	0	0		ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	MSMS	A375_MHC_IP_R2	2	435.962158203125	2	436.26601	870.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.312	1	41.087	40.587	41.587	0.77451								0	0	0	0.15003	1	14924	14924		21.537	6.6987	1				1754	2810	1091	1106	1743	1743					0.0770297290284816
AEVGVLVGKDR	11	Unmodified	_AEVGVLVGKDR_					0	0	0		ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	MULTI-MSMS	A375_MHC_IP_R2	2	381.9181213378906	3	381.555784	1141.64552	-0.1276	-4.8686E-05	-0.19114	-7.2932E-05	-0.31874	-0.00012162	381.5557202314484	30.182	0.60877	30.901	30.708	31.317	0.71857					22	11	3	0	0	0	0.72751	2	10615	10555;10615		11.271	2.5194	1	2229700			1755	2810	1092	1107	1744;1745	1745					0.08036488426091637
AEVGVLVGKDR	11	Unmodified	_AEVGVLVGKDR_					0	0	0		ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	MULTI-SECPEP	A375_MHC_IP_R2	2	572.229736328125	2	571.830037	1141.64552	-0.36584	-0.0002092	-0.25328	-0.00014483	-0.61912	-0.00035403	571.8299958672912	30.167	0.45717	30.886	30.759	31.216	0.71857					12	8	2	0	0	0	0.96429	1	10625	10625		20.871	9.3764	1	1705800			1756	2810	1092	1107	1746	1746					0.08036488426091637
AEVGVWDNY	9	Unmodified	_AEVGVWDNY_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000466479.1_1_7:56130338-56130775:+|nuORF	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	A375_MHC_IP_R2	2	527.2391357421875	2	526.737814	1051.46108	-0.37881	-0.00019953	-0.15722	-8.2816E-05	-0.53603	-0.00028235	526.7377738401239	84.04	0.66586	84.779	84.407	85.073	0.73962					14	10	2	0	0	0	0.6656	1	31911	31911		10.074	1.4806	1	1162100			1757	5633	1093	1108	1747	1747					-0.06259699724478196
AEVHIDIRKL	10	Unmodified	_AEVHIDIRKL_					0	0	0		nc|ENSG00000136273|O60921-2|HUS1;ENSG00000136273|ENST00000258774|HUS1	nc|ENSG00000136273|O60921-2|HUS1	nc|ENSG00000136273|O60921-2|HUS1	MULTI-MSMS	A375_MHC_IP_R1	1	398.9716796875	3	398.571545	1192.69281	0.096781	3.8574E-05	-0.10006	-3.988E-05	-0.0032752	-1.3054E-06	398.5714658869198	48.106	0.556	48.106	47.87	48.426	0					19	10	3	0	0	0	0.19516	1	16954	16954		38.161	21.886	1	4711800			1758	4777	1094	1109	1748	1748					0.10416767697097384
AEVHIDIRKL	10	Unmodified	_AEVHIDIRKL_					0	0	0		nc|ENSG00000136273|O60921-2|HUS1;ENSG00000136273|ENST00000258774|HUS1	nc|ENSG00000136273|O60921-2|HUS1	nc|ENSG00000136273|O60921-2|HUS1	MULTI-MSMS	A375_MHC_IP_R2	2	398.9714660644531	3	398.571545	1192.69281	0.10903	4.3458E-05	0.19758	7.8749E-05	0.30661	0.00012221	398.57152844295007	47.235	0.40774	47.996	47.766	48.174	0.76128					18	7	3	0	0	0	0.11193	1	17710	17710		53.798	29.997	1	6687900			1759	4777	1094	1109	1749	1749					0.10416767697097384
AEVHKEGKYY	10	Unmodified	_AEVHKEGKYY_					0	0	0		tr|U7SKN6|U7SKN6_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02089PE=4SV=1	tr|U7SKN6|U7SKN6_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02089PE=4SV=1	tr|U7SKN6|U7SKN6_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02089PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	408.28253173828125	3	408.540022	1222.59824	-0.16188	-6.6136E-05	0.23884	9.7575E-05	0.076955	3.1439E-05	408.54017562185487	19.906	0.35443	19.906	19.725	20.079	0					8	6	2	0	0	0	0.93194	1	5055	5055		0.50596	0	1	1090800			1760	29478	1095	1110	1750	1750					-0.004157908448860326
AEVIILPKKH	10	Unmodified	_AEVIILPKKH_					0	0	0		ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1;ENST00000473552.1_1_X:153991228-153994704:+|nuORF;ENST00000475423.1_1_X:153991228-153993352:+|nuORF	ENSG00000130826|ENST00000369550|DKC1	ENSG00000130826|ENST00000369550|DKC1	MULTI-MSMS	A375_MHC_IP_R1	1	383.64471435546875	3	383.24477	1146.71248	-0.16428	-6.2958E-05	0.26672	0.00010222	0.10245	3.9263E-05	383.24484749924375	29.273	0.35573	29.273	29.047	29.403	0					16	6	3	0	0	0	0.38461	1	9129	9129		35.08	16.358	1	15702000			1761	4287	1096	1111	1751	1751					0.1449914370782608
AEVIILPKKH	10	Unmodified	_AEVIILPKKH_					0	0	0		ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1;ENST00000473552.1_1_X:153991228-153994704:+|nuORF;ENST00000475423.1_1_X:153991228-153993352:+|nuORF	ENSG00000130826|ENST00000369550|DKC1	ENSG00000130826|ENST00000369550|DKC1	MULTI-SECPEP	A375_MHC_IP_R1	1	575.1423950195312	2	574.363516	1146.71248	-0.69199	-0.00039745	0.13127	7.5395E-05	-0.56072	-0.00032206	574.3636767116581	29.243	0.25363	29.243	29.149	29.403	0					7	4	2	0	0	0	0.41513	1	9156	9156		53.404	28.413	1	2778000			1762	4287	1096	1111	1752	1752					0.1449914370782608
AEVIILPKKH	10	Unmodified	_AEVIILPKKH_					0	0	0		ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1;ENST00000473552.1_1_X:153991228-153994704:+|nuORF;ENST00000475423.1_1_X:153991228-153993352:+|nuORF	ENSG00000130826|ENST00000369550|DKC1	ENSG00000130826|ENST00000369550|DKC1	MULTI-MSMS	A375_MHC_IP_R2	2	383.97900390625	3	383.24477	1146.71248	-0.58516	-0.00022426	0.52549	0.00020139	-0.059671	-2.2869E-05	383.2449127654392	28.487	0.30369	29.166	28.96	29.263	0.67857					14	5	4	0	0	0	0.27942	2	9845	9845;9862		41.347	22.626	1	18469000			1763	4287	1096	1111	1753;1754	1753					0.1449914370782608
AEVIILPKKH	10	Unmodified	_AEVIILPKKH_					0	0	0		ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1;ENST00000473552.1_1_X:153991228-153994704:+|nuORF;ENST00000475423.1_1_X:153991228-153993352:+|nuORF	ENSG00000130826|ENST00000369550|DKC1	ENSG00000130826|ENST00000369550|DKC1	MULTI-MATCH	A375_MHC_IP_R2	2		2	574.363516	1146.71248	-0.69951	-0.00040178	-0.0098777	-5.6734E-06	-0.70939	-0.00040745	574.3634900929438	28.51	0.2035	29.189	29.01	29.214	0.67857	-0.02713	-6.5697E-05	NaN	53.404	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3518300			1764	4287	1096	1111							0.1449914370782608
AEVKCGAAVF	10	Unmodified	_AEVKCGAAVF_					0	0	0			REV__ENST00000486530.1_1_3:148847510-148871436:+|nuORF	REV__ENST00000486530.1_1_3:148847510-148871436:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	497.6531066894531	2	497.754953	993.495352	-0.29679	-0.00014773	-1.8293	-0.00091055	-2.1261	-0.0010583	497.75474188721597	28.546	0.60658	28.546	28.288	28.895	0					22	11	4	0	0	0	0.90853	1	8822	8822		10.824	7.2274	1	4313400	+		1765	20408	1097	1112	1755	1755					-0.0016557483721726385
AEVKGVYQF	9	Unmodified	_AEVKGVYQF_					0	0	0		ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-SECPEP	A375_MHC_IP_R1	1	521.1740112304688	2	520.7742	1039.53385	-0.63663	-0.00033154	0.12845	6.6895E-05	-0.50818	-0.00026465	520.7741670178588	52.703	0.66125	52.703	52.387	53.048	0					42	12	5	0	0	0	0.011236	1	18727	18727		118.07	63.295	1	15110000			1766	7089	1098	1113	1756	1756					0.01566054068939593
AEVKGVYQF	9	Unmodified	_AEVKGVYQF_					0	0	0		ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-SECPEP	A375_MHC_IP_R2	2	521.1739501953125	2	520.7742	1039.53385	-0.95973	-0.0004998	-0.13117	-6.8308E-05	-1.0909	-0.00056811	520.7740180235695	51.993	0.60953	52.745	52.423	53.032	0.75225					29	11	3	0	0	0	0.010978	1	19551	19551		129.77	74.999	1	14485000			1767	7089	1098	1113	1757	1757					0.01566054068939593
AEVLAARHQAQ	11	Unmodified	_AEVLAARHQAQ_					0	0	0		nc|ENSG00000140459|P05108-2|CYP11A1;ENSG00000140459|ENST00000268053|CYP11A1	nc|ENSG00000140459|P05108-2|CYP11A1	nc|ENSG00000140459|P05108-2|CYP11A1	MSMS	A375_MHC_IP_R2	2	597.208984375	2	597.322911	1192.63127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.242	1	46.007	45.507	46.507	0.76519								0	0	0	0.15837	1	16906	16906		15.248	2.206	1				1768	5155	1099	1114	1758	1758					0.04265835997807699
AEVLDLRRL	9	Unmodified	_AEVLDLRRL_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-SECPEP	A375_MHC_IP_R1	1	362.9549865722656	3	362.220624	1083.64004	0.11798	4.2736E-05	-1.4413	-0.00052207	-1.3233	-0.00047933	362.55478150610594	64.713	0.40693	64.713	64.444	64.851	0					19	7	4	0	0	0	0.48845	1	23416	23416		30.703	14.965	1	2368500			1769	1462	1100	1115	1759	1759					0.10156809634281672
AEVLDLRRL	9	Unmodified	_AEVLDLRRL_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	A375_MHC_IP_R2	2	362.61712646484375	3	362.220624	1083.64004	-0.085173	-3.0852E-05	-4.0831	-0.001479	-4.1683	-0.0015098	362.21824505171804	63.773	1.1172	64.513	63.582	64.699	0.74022					31	21	3	0	0	0	0.11638	2	24140	24140;24196		47.732	29.359	1	3381800			1770	1462	1100	1115	1760;1761	1760					0.10156809634281672
AEVLDLRRLY	10	Unmodified	_AEVLDLRRLY_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	A375_MHC_IP_R1	1	416.9750671386719	3	416.575067	1246.70337	0.16424	6.8419E-05	-0.031812	-1.3252E-05	0.13243	5.5167E-05	416.5750155620313	80.101	0.56195	80.101	79.879	80.441	0					30	10	4	0	0	0	0.21149	1	29215	29215		48.073	25.298	1	8528500			1771	1462	1101	1116	1762	1762					0.08988750351545605
AEVLDLRRLY	10	Unmodified	_AEVLDLRRLY_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	A375_MHC_IP_R1	1	624.7584838867188	2	624.358962	1246.70337	-0.59044	-0.00036865	0.59857	0.00037372	0.0081258	5.0734E-06	624.3593990709762	80.145	0.61195	80.145	79.728	80.34	0					17	11	2	0	0	0	0.37567	1	29237	29237		34.402	11.665	1	4040000			1772	1462	1101	1116	1763	1763					0.08988750351545605
AEVLDLRRLY	10	Unmodified	_AEVLDLRRLY_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	A375_MHC_IP_R2	2	416.9751281738281	3	416.575067	1246.70337	0.076366	3.1812E-05	-0.20102	-8.3738E-05	-0.12465	-5.1926E-05	416.57491282483414	79.295	0.70831	80.04	79.693	80.401	0.74474					28	13	3	0	0	0	0.21149	1	30070	30070		48.073	15.175	1	9748100			1773	1462	1101	1116	1764	1764					0.08988750351545605
AEVLDLRRLY	10	Unmodified	_AEVLDLRRLY_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-SECPEP	A375_MHC_IP_R2	2	624.7581787109375	2	624.358962	1246.70337	-0.66473	-0.00041503	0.10595	6.6152E-05	-0.55878	-0.00034888	624.3589325059517	79.346	0.50386	80.091	79.846	80.35	0.74474					18	9	3	0	0	0	0.6774	1	30110	30110		34.402	17.289	1	3317400			1774	1462	1101	1116	1765	1765					0.08988750351545605
AEVLEAHTI	9	Unmodified	_AEVLEAHTI_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	A375_MHC_IP_R1	1	492.1637878417969	2	491.763832	981.513111	-0.06794	-3.3411E-05	-0.18305	-9.0019E-05	-0.25099	-0.00012343	491.7637320388969	45.509	0.45441	45.509	45.334	45.789	0					13	8	2	0	0	0	0.14422	1	15946	15946		61.357	40.904	1	3002000			1775	3882	1102	1117	1766	1766					0.02161463689287757
AEVLEAHTI	9	Unmodified	_AEVLEAHTI_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	A375_MHC_IP_R2	2	492.1636657714844	2	491.763832	981.513111	-0.64169	-0.00031556	-0.14606	-7.1829E-05	-0.78775	-0.00038739	491.76375285095446	44.697	0.40714	45.466	45.239	45.646	0.7691					11	7	2	0	0	0	0.24548	1	16716	16716		52.268	31.815	1	2181700			1776	3882	1102	1117	1767	1767					0.02161463689287757
AEVLELPDSP	10	Unmodified	_AEVLELPDSP_					0	0	0			REV__IGSF1|p.G1248E|1|0.32|ENSG00000147255|chrX:131274607-131274607|C/T|missense_variant	REV__IGSF1|p.G1248E|1|0.32|ENSG00000147255|chrX:131274607-131274607|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	535.6739501953125	2	535.274229	1068.53391	-0.20708	-0.00011084	-0.73358	-0.00039267	-0.94065	-0.00050351	535.273629308627	48.905	0.75851	48.905	48.577	49.336	0					30	13	3	0	0	0	0.83355	1	17266	17266		22.736	1.1993	1	6714900	+		1777	26781	1103	1118	1768	1768					0.0023800927829142893
AEVLELPDSP	10	Unmodified	_AEVLELPDSP_					0	0	0			REV__IGSF1|p.G1248E|1|0.32|ENSG00000147255|chrX:131274607-131274607|C/T|missense_variant	REV__IGSF1|p.G1248E|1|0.32|ENSG00000147255|chrX:131274607-131274607|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	534.6658935546875	2	535.274229	1068.53391	-0.74703	-0.00039986	-0.32813	-0.00017564	-1.0752	-0.00057551	535.2738318612097	48.116	0.70445	48.877	48.632	49.336	0.76127					27	12	3	0	0	0	0.61662	2	18081	18081;18124		22.736	10.496	1	7139800	+		1778	26781	1103	1118	1769;1770	1769					0.0023800927829142893
AEVLGLILRY	10	Unmodified	_AEVLGLILRY_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	A375_MHC_IP_R1	1	573.9502563476562	2	573.847699	1145.68084	-0.31775	-0.00018234	0.63706	0.00036558	0.31931	0.00018323	573.8479847031474	119.55	0.3074	119.55	119.33	119.64	0					7	5	2	0	0	0	0.095173	1	44154	44154		74.2	33.96	1	7214600			1779	9866	1104	1119	1771	1771					0.11383150953906807
AEVLKQGPLPP	11	Unmodified	_AEVLKQGPLPP_					0	0	0		nc|ENSG00000179168|Q86UU5-2|GGN;ENSG00000179168|ENST00000334928|GGN	nc|ENSG00000179168|Q86UU5-2|GGN	nc|ENSG00000179168|Q86UU5-2|GGN	MULTI-MSMS	A375_MHC_IP_R2	2	383.9232177734375	3	383.560646	1147.66011	-0.45471	-0.00017441	-1.9685	-0.00075503	-2.4232	-0.00092944	383.55996732703846	22.743	0.25483	23.374	23.215	23.47	0.63015					6	4	2	0	0	0	0.72964	1	7205	7205		9.2438	3.0094	1	472850			1780	8212	1105	1120	1772	1772					0.09218560574208823
AEVLNKHSL	9	Unmodified	_AEVLNKHSL_					0	0	0		HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant;nc|ENSG00000099783|P52272-2|HNRNPM;ENSG00000099783|ENST00000325495|HNRNPM;ENST00000597813.5_1_19:8528492-8528615:+|nuORF	HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant	HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	506.18438720703125	2	505.785099	1009.55564	-0.9715	-0.00049137	-0.24752	-0.00012519	-1.219	-0.00061657	505.7850317145806	24.07	0.71314	24.713	24.448	25.161	0.64368					15	13	2	0	0	0	0.16945	1	7890	7890		40.239	8.9709	1	4621600			1781	2081	1106	1121	1773	1773					0.051248588175326404
AEVLPQHKF	9	Unmodified	_AEVLPQHKF_					0	0	0		ENST00000469042.5_1_3:132298334-132378619:-|nuORF;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11;ENST00000489991.1_1_3:132349350-132378619:-|nuORF	ENST00000469042.5_1_3:132298334-132378619:-|nuORF	ENST00000469042.5_1_3:132298334-132378619:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	535.1951293945312	2	534.795466	1067.57638	-0.67721	-0.00036217	0.20566	0.00010998	-0.47156	-0.00025219	534.7955484334371	31.895	0.51121	31.895	31.616	32.127	0					14	9	2	0	0	0	0.11849	1	10239	10239		53.404	16.898	1	7615900			1782	9772	1107	1122	1774	1774					0.045294491971844764
AEVLPQHKF	9	Unmodified	_AEVLPQHKF_					0	0	0		ENST00000469042.5_1_3:132298334-132378619:-|nuORF;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11;ENST00000489991.1_1_3:132349350-132378619:-|nuORF	ENST00000469042.5_1_3:132298334-132378619:-|nuORF	ENST00000469042.5_1_3:132298334-132378619:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	535.1948852539062	2	534.795466	1067.57638	-0.83923	-0.00044882	-0.10107	-5.4051E-05	-0.9403	-0.00050287	534.7953748471247	31.092	0.40704	31.811	31.567	31.974	0.71857					19	7	4	0	0	0	0.056023	1	10958	10958		66.457	33.671	1	5566700			1783	9772	1107	1122	1775	1775					0.045294491971844764
AEVLQQAGY	9	Unmodified	_AEVLQQAGY_					0	0	0		ENSG00000141337|ENST00000621439|ARSG	ENSG00000141337|ENST00000621439|ARSG	ENSG00000141337|ENST00000621439|ARSG	MSMS	A375_MHC_IP_R2	2	489.50128173828125	2	489.748182	977.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.882	1	52.634	52.134	53.134	0.75225								0	0	0	0.15142	1	19538	19538		19.257	3.1079	1				1784	5228	1108	1123	1776	1776					-0.007831093448203319
AEVLQSTQRF	10	Unmodified	_AEVLQSTQRF_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;ENST00000498596.5_1_1:171557633-171560983:+|nuORF	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-SECPEP	A375_MHC_IP_R1	1	590.2120361328125	2	589.811845	1177.60914	-0.32636	-0.00019249	0.20142	0.0001188	-0.12494	-7.3691E-05	589.8119500296881	43.815	0.61084	43.815	43.502	44.113	0					24	11	3	0	0	0	0.013856	1	15230	15230		124.95	54.621	1	12147000			1785	3490	1109	1124	1777	1777					0.027436115293539842
AEVLQSTQRF	10	Unmodified	_AEVLQSTQRF_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;ENST00000498596.5_1_1:171557633-171560983:+|nuORF	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	A375_MHC_IP_R2	2	590.2116088867188	2	589.811845	1177.60914	-0.47086	-0.00027772	-0.17056	-0.0001006	-0.64142	-0.00037832	589.811784199303	43.025	0.60717	43.797	43.472	44.079	0.7724					32	11	4	0	0	0	0.011657	1	16006	16006		114.5	56.775	1	11525000			1786	3490	1109	1124	1778	1778					0.027436115293539842
AEVLQSTQRFF	11	Unmodified	_AEVLQSTQRFF_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;ENST00000498596.5_1_1:171557633-171560983:+|nuORF	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-SECPEP	A375_MHC_IP_R2	2	441.9635009765625	3	442.56646	1324.67755	-0.65499	-0.00028988	-0.096071	-4.2518E-05	-0.75106	-0.00033239	442.56622447084425	58.36	0.25751	59.109	58.929	59.187	0.74894					6	4	2	0	0	0	0.99548	1	22034	22034		3.5927	3.1844	1	835300			1787	3490	1110	1125	1779	1779					0.02819856109204011
AEVLTEAPW	9	Unmodified	_AEVLTEAPW_					0	0	0		ENST00000471223.1_1_1:3548577-3548739:-|nuORF	ENST00000471223.1_1_1:3548577-3548739:-|nuORF	ENST00000471223.1_1_1:3548577-3548739:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	508.6689758300781	2	508.258382	1014.50221	-0.8891	-0.00045189	0.06926	3.5202E-05	-0.81984	-0.00041669	508.25821366725233	41.435	0.3535	42.209	41.997	42.35	0.77451					10	6	2	0	0	0	0.4261	1	15404	15404		18.146	0	1	1687900			1788	12350	1111	1126	1780	1780					-0.004459386850044211
AEVMAVMPSI	10	Unmodified	_AEVMAVMPSI_					0	0	0		ENSG00000204178|ENST00000374343|MACO1;nc|ENSG00000204178|Q8N5G2-3|MACO1;nc|ENSG00000204178|Q8N5G2-2|MACO1	ENSG00000204178|ENST00000374343|MACO1	ENSG00000204178|ENST00000374343|MACO1	MSMS	A375_MHC_IP_R1	1	524.2158813476562	2	524.264296	1046.51404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.92	1	104.92	104.42	105.42	0								0	0	0	0.15038	1	38522	38522		17.113	1.2657	1				1789	9413	1112	1127	1781	1781					-0.00735781257662893
AEVMAVMPSI	10	Unmodified	_AEVMAVMPSI_					0	0	0		ENSG00000204178|ENST00000374343|MACO1;nc|ENSG00000204178|Q8N5G2-3|MACO1;nc|ENSG00000204178|Q8N5G2-2|MACO1	ENSG00000204178|ENST00000374343|MACO1	ENSG00000204178|ENST00000374343|MACO1	MSMS	A375_MHC_IP_R2	2	524.2159423828125	2	524.264296	1046.51404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.98	1	104.75	104.25	105.25	0.76377								0	0	0	0.15038	1	39357	39357		17.113	1.2657	1				1790	9413	1112	1127	1782	1782					-0.00735781257662893
AEVNALDGY	9	Unmodified	_AEVNALDGY_					0	0	0		ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	MULTI-SECPEP	A375_MHC_IP_R2	2	951.841552734375	1	951.441802	950.434526	-0.47606	-0.00045294	0.62105	0.00059089	0.145	0.00013795	951.4426863392079	61.386	0.35291	62.132	61.919	62.272	0.74504					10	6	2	0	0	0	0.044425	1	23268	23268		96.936	60.429	1	1491800			1791	8120	1113	1128	1783	1783					-0.04267388615812706
AEVNALDGY	9	Unmodified	_AEVNALDGY_					0	0	0		ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	MULTI-MATCH	A375_MHC_IP_R1	1		1	951.441802	950.434526	0.090247	8.5865E-05	-0.18135	-0.00017255	-0.091105	-8.6681E-05	951.4417267486309	62.02	0.41045	62.02	61.737	62.148	0	-0.055677	-0.00040748	NaN	96.936	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2123700			1792	8120	1113	1128							-0.04267388615812706
AEVPEQKNY	9	Unmodified	_AEVPEQKNY_					0	0	0		nc|ENSG00000257594|Q8N4A0-2|GALNT4;ENST00000547474.1_3_12:89916592-89919989:-|nuORF;ENSG00000257594|ENST00000529983|GALNT4	nc|ENSG00000257594|Q8N4A0-2|GALNT4	nc|ENSG00000257594|Q8N4A0-2|GALNT4	MULTI-MSMS	A375_MHC_IP_R2	2	539.6638793945312	2	539.264196	1076.51384	-1.1857	-0.0006394	0.52492	0.00028307	-0.66077	-0.00035633	539.2644257742638	20.859	0.55716	21.469	21.109	21.666	0.61029					25	10	4	0	0	0	0.037683	2	6500	6464;6500		69.105	42.837	1	4315500			1793	9911	1114	1129	1784;1785	1785					-0.021357416616638147
AEVPKEHW	8	Unmodified	_AEVPKEHW_					0	0	0		SAT1|p.P66L|1|0.93|ENSG00000130066|chrX:23783878-23783878|C/T|missense_variant;ENST00000489394.5_1_X:23801366-23802421:+|nuORF;ENSG00000130066|ENST00000379270|SAT1	SAT1|p.P66L|1|0.93|ENSG00000130066|chrX:23783878-23783878|C/T|missense_variant	SAT1|p.P66L|1|0.93|ENSG00000130066|chrX:23783878-23783878|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	499.2407531738281	2	498.250892	994.48723	-0.70901	-0.00035327	0.023347	1.1633E-05	-0.68567	-0.00034163	498.25080561335653	26.569	0.45555	26.569	26.373	26.828	0					19	8	3	0	0	0	0.76654	1	7988	7988		15.847	3.3156	1	8087000			1794	4221	1115	1130	1786	1786					-0.010233857623461518
AEVPKEHW	8	Unmodified	_AEVPKEHW_					0	0	0		SAT1|p.P66L|1|0.93|ENSG00000130066|chrX:23783878-23783878|C/T|missense_variant;ENST00000489394.5_1_X:23801366-23802421:+|nuORF;ENSG00000130066|ENST00000379270|SAT1	SAT1|p.P66L|1|0.93|ENSG00000130066|chrX:23783878-23783878|C/T|missense_variant	SAT1|p.P66L|1|0.93|ENSG00000130066|chrX:23783878-23783878|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	498.6503601074219	2	498.250892	994.48723	-0.95141	-0.00047404	0.083859	4.1783E-05	-0.86755	-0.00043226	498.2508717243792	25.971	0.45839	26.631	26.449	26.907	0.65992					21	8	3	0	0	0	0.46955	1	8742	8742		65.235	29.191	1	7908400			1795	4221	1115	1130	1787	1787					-0.010233857623461518
AEVPTQLVSY	10	Unmodified	_AEVPTQLVSY_					0	0	0		ENSG00000214078|ENST00000397443|CPNE1;ENST00000401607.6_1_20:34214165-34218368:-|nuORF;ENST00000483495.5_1_20:34214165-34218616:-|nuORF;ENST00000473373.1_1_20:34214165-34214426:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-SECPEP	A375_MHC_IP_R1	1	554.1892700195312	2	553.790047	1105.56554	-0.76089	-0.00042137	0.18435	0.00010209	-0.57654	-0.00031928	553.7898179914928	86.109	0.5561	86.109	85.921	86.477	0					29	10	4	0	0	0	0.13157	1	31586	31586		80.676	42.5	1	4455200			1796	9604	1116	1131	1788	1788					0.01698002032230761
AEVPTQLVSY	10	Unmodified	_AEVPTQLVSY_					0	0	0		ENSG00000214078|ENST00000397443|CPNE1;ENST00000401607.6_1_20:34214165-34218368:-|nuORF;ENST00000483495.5_1_20:34214165-34218616:-|nuORF;ENST00000473373.1_1_20:34214165-34214426:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-SECPEP	A375_MHC_IP_R2	2	554.1806030273438	2	553.790047	1105.56554	-0.61175	-0.00033878	-0.17234	-9.5441E-05	-0.78409	-0.00043422	553.7898672331567	85.541	0.50897	86.277	86.034	86.543	0.73601					23	9	3	0	0	0	0.13157	1	32482	32482		63.227	30.442	1	5708000			1797	9604	1116	1131	1789	1789					0.01698002032230761
AEVRASVLNFL	11	Unmodified	_AEVRASVLNFL_					0	0	0		ENST00000478756.1_1_1:155580834-155581160:+|nuORF;ENST00000473327.5_1_1:155580203-155581350:+|nuORF;ENST00000488901.5_1_1:155580006-155581350:+|nuORF	ENST00000478756.1_1_1:155580834-155581160:+|nuORF	ENST00000478756.1_1_1:155580834-155581160:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	407.28839111328125	3	406.89955	1217.67682	-0.0050275	-2.0457E-06	-0.5612	-0.00022835	-0.56622	-0.0002304	406.8994203037424	31.674	1.0691	32.41	31.788	32.857	0.73692					46	20	4	0	0	0	0.68343	1	11103	11103		16.838	7.0741	1	15655000			1798	12386	1117	1132	1790	1790					0.07669061460183002
AEVSGGLKI	9	Unmodified	_AEVSGGLKI_					0	0	0		ENSG00000224470|ENST00000427980|ATXN1L	ENSG00000224470|ENST00000427980|ATXN1L	ENSG00000224470|ENST00000427980|ATXN1L	MULTI-SECPEP	A375_MHC_IP_R1	1	436.9229736328125	2	437.255643	872.496732	0.010741	4.6967E-06	-0.00079874	-3.4925E-07	0.0099427	4.3475E-06	437.2555805062143	45.893	0.35511	45.893	45.636	45.992	0					11	6	2	0	0	0	0.69381	1	16073	16073		20.415	2.2682	1	1302800			1799	9692	1118	1133	1791	1791					0.055383825231729134
AEVSGGLKI	9	Unmodified	_AEVSGGLKI_					0	0	0		ENSG00000224470|ENST00000427980|ATXN1L	ENSG00000224470|ENST00000427980|ATXN1L	ENSG00000224470|ENST00000427980|ATXN1L	MULTI-MSMS	A375_MHC_IP_R2	2	437.65570068359375	2	437.255643	872.496732	-0.41733	-0.00018248	0.3625	0.00015851	-0.054822	-2.3971E-05	437.25580827053017	44.918	0.45924	45.688	45.492	45.951	0.7691					12	8	2	0	0	0	0.12771	1	16800	16800		45.7	1.8413	1	2039300			1800	9692	1118	1133	1792	1792					0.055383825231729134
AEVTLKTYW	9	Unmodified	_AEVTLKTYW_					0	0	0		ENSG00000179115|ENST00000314606|FARSA;ENST00000592662.5_1_19:13039347-13044510:-|nuORF	ENSG00000179115|ENST00000314606|FARSA	ENSG00000179115|ENST00000314606|FARSA	MULTI-SECPEP	A375_MHC_IP_R1	1	556.1970825195312	2	555.795132	1109.57571	-0.62516	-0.00034746	0.52212	0.00029019	-0.10304	-5.7268E-05	555.7956528369983	76.315	1.0161	76.315	76.067	77.083	0					39	19	3	0	0	0	0.05217	1	27817	27817		89.401	78.577	1	3683800			1801	8205	1119	1134	1793	1793					0.0253060975749122
AEVTSMARIL	10	Unmodified	_AEVTSMARIL_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;ENST00000532027.5_1_11:6568031-6569307:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	A375_MHC_IP_R2	2	546.1990356445312	2	545.799891	1089.58523	-1.1986	-0.00065417	-1.4781	-0.00080676	-2.6767	-0.0014609	545.7987623894365	33.486	0.40657	34.238	33.992	34.399	0.75225					17	7	3	0	0	0	0.46496	1	12020	12020		49.554	7.7147	1	6046900			1802	8235	1120	1135	1794	1794					0.0440205477134441
AEVVPTEGL	9	Unmodified	_AEVVPTEGL_					0	0	0		ENSG00000162852|ENST00000366513|CNST	ENSG00000162852|ENST00000366513|CNST	ENSG00000162852|ENST00000366513|CNST	MULTI-SECPEP	A375_MHC_IP_R1	1	914.9310302734375	1	914.482939	913.475663	0.08702	7.9578E-05	-0.23773	-0.0002174	-0.15071	-0.00013782	914.482454406889	72.092	0.65773	72.092	71.765	72.423	0					18	12	2	0	0	0	0.46045	1	26090	26090		36.127	7.6402	1	2936000			1803	6605	1121	1136	1795	1795					0.015463724236838061
AEVVPTEGL	9	Unmodified	_AEVVPTEGL_					0	0	0		ENSG00000162852|ENST00000366513|CNST	ENSG00000162852|ENST00000366513|CNST	ENSG00000162852|ENST00000366513|CNST	MULTI-MATCH	A375_MHC_IP_R2	2		1	914.482939	913.475663	-0.61774	-0.00056492	0.18927	0.00017308	-0.42848	-0.00039183	914.4831445558938	71.402	0.55714	72.136	71.857	72.414	0.73421	0.021768	0.00011668	NaN	36.127	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2934600			1804	6605	1121	1136							0.015463724236838061
AEVVRGDVK	9	Unmodified	_AEVVRGDVK_					0	0	0			REV__chr12:54281908-54283827|472|76.45|0.0|22.87|+|ENST00000678448|HNRNPA1,HNRNPA1	REV__chr12:54281908-54283827|472|76.45|0.0|22.87|+|ENST00000678448|HNRNPA1,HNRNPA1	MULTI-MSMS	A375_MHC_IP_R2	2	486.6456604003906	2	486.777274	971.539994	-0.67569	-0.00032891	0.099101	4.824E-05	-0.57659	-0.00028067	486.7771721103555	55.552	0.96458	56.303	55.678	56.642	0.75075					52	18	4	0	0	0	0.57432	1	20843	20843		16.149	2.2431	1	24765000	+		1805	15688	1122	1137	1796	1796					0.05308572300475589
AEWASRFW	8	Unmodified	_AEWASRFW_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	A375_MHC_IP_R2	2	527.1506958007812	2	526.751059	1051.48756	-0.38318	-0.00020184	-2.1568	-0.0011361	-2.54	-0.0013379	526.7507135680956	88.857	1.6192	89.589	88.316	89.936	0.7318					38	31	2	0	0	0	0.43631	2	33851	33794;33851		51.63	34.517	1	2001200			1806	4092	1123	1138	1797;1798	1798					-0.03611966042490167
AEWDQVTVY	9	Unmodified	_AEWDQVTVY_					0	0	0		nc|ENSG00000001497|Q9Y4W2-4|LAS1L;nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-3|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	MULTI-SECPEP	A375_MHC_IP_R1	1	556.158203125	2	555.758746	1109.50294	-0.63942	-0.00035536	-0.22063	-0.00012262	-0.86005	-0.00047798	555.7585567845632	94.239	0.6581	94.239	93.89	94.548	0					27	12	3	0	0	0	0.29257	1	34608	34608		57.722	23.62	1	4723100			1807	845	1124	1139	1799	1799					-0.047431440359332555
AEWDQVTVY	9	Unmodified	_AEWDQVTVY_					0	0	0		nc|ENSG00000001497|Q9Y4W2-4|LAS1L;nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-3|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	MULTI-SECPEP	A375_MHC_IP_R2	2	555.48876953125	2	555.758746	1109.50294	-0.6298	-0.00035001	0.020116	1.118E-05	-0.60968	-0.00033883	555.7587065358047	93.693	0.70926	94.437	94.058	94.768	0.74474					30	13	3	0	0	0	0.13199	1	35608	35608		75.761	31.354	1	6589000			1808	845	1124	1139	1800	1800					-0.047431440359332555
AEWEANPLI	9	Unmodified	_AEWEANPLI_					0	0	0		nc|ENSG00000129197|Q86UA6-3|RPAIN;nc|ENSG00000129197|Q86UA6-4|RPAIN;nc|ENSG00000129197|Q86UA6-9|RPAIN;nc|ENSG00000129197|Q86UA6-2|RPAIN;ENST00000571043.5_1_17:5323428-5329403:+|nuORF;ENSG00000129197|ENST00000381209|RPAIN;nc|ENSG00000129197|Q86UA6-8|RPAIN	nc|ENSG00000129197|Q86UA6-3|RPAIN	nc|ENSG00000129197|Q86UA6-3|RPAIN	MULTI-MSMS	A375_MHC_IP_R1	1	1042.48681640625	1	1042.52039	1041.51311	0.35641	0.00037156	-0.041326	-4.3083E-05	0.31508	0.00032848	1042.520440514909	106.79	0.66365	106.79	106.42	107.08	0					27	12	3	0	0	0	0.029064	1	39268	39268		75.761	31.903	1	11053000			1809	4180	1125	1140	1801	1801					-0.00598536310712916
AEWEANPLI	9	Unmodified	_AEWEANPLI_					0	0	0		nc|ENSG00000129197|Q86UA6-3|RPAIN;nc|ENSG00000129197|Q86UA6-4|RPAIN;nc|ENSG00000129197|Q86UA6-9|RPAIN;nc|ENSG00000129197|Q86UA6-2|RPAIN;ENST00000571043.5_1_17:5323428-5329403:+|nuORF;ENSG00000129197|ENST00000381209|RPAIN;nc|ENSG00000129197|Q86UA6-8|RPAIN	nc|ENSG00000129197|Q86UA6-3|RPAIN	nc|ENSG00000129197|Q86UA6-3|RPAIN	MULTI-SECPEP	A375_MHC_IP_R1	1	522.1653442382812	2	521.763832	1041.51311	-0.30239	-0.00015778	0.33532	0.00017496	0.032932	1.7183E-05	521.7640865495831	106.75	0.81778	106.75	106.37	107.19	0					36	15	3	0	0	0	0.04395	1	39149	39149		92.491	40.223	1	6900400			1810	4180	1125	1140	1802	1802					-0.00598536310712916
AEWEANPLI	9	Unmodified	_AEWEANPLI_					0	0	0		nc|ENSG00000129197|Q86UA6-3|RPAIN;nc|ENSG00000129197|Q86UA6-4|RPAIN;nc|ENSG00000129197|Q86UA6-9|RPAIN;nc|ENSG00000129197|Q86UA6-2|RPAIN;ENST00000571043.5_1_17:5323428-5329403:+|nuORF;ENSG00000129197|ENST00000381209|RPAIN;nc|ENSG00000129197|Q86UA6-8|RPAIN	nc|ENSG00000129197|Q86UA6-3|RPAIN	nc|ENSG00000129197|Q86UA6-3|RPAIN	MULTI-SECPEP	A375_MHC_IP_R2	2	522.1641235351562	2	521.763832	1041.51311	-0.61035	-0.00031846	0.10437	5.4456E-05	-0.50598	-0.000264	521.7639031585804	105.99	0.81513	106.75	106.27	107.09	0.75977					32	15	3	0	0	0	0.04038	1	40028	40028		85.642	33.373	1	5061100			1811	4180	1125	1140	1803	1803					-0.00598536310712916
AEWEANPLI	9	Unmodified	_AEWEANPLI_					0	0	0		nc|ENSG00000129197|Q86UA6-3|RPAIN;nc|ENSG00000129197|Q86UA6-4|RPAIN;nc|ENSG00000129197|Q86UA6-9|RPAIN;nc|ENSG00000129197|Q86UA6-2|RPAIN;ENST00000571043.5_1_17:5323428-5329403:+|nuORF;ENSG00000129197|ENST00000381209|RPAIN;nc|ENSG00000129197|Q86UA6-8|RPAIN	nc|ENSG00000129197|Q86UA6-3|RPAIN	nc|ENSG00000129197|Q86UA6-3|RPAIN	MULTI-SECPEP	A375_MHC_IP_R2	2	1042.988525390625	1	1042.52039	1041.51311	0.038794	4.0443E-05	-0.24481	-0.00025522	-0.20602	-0.00021478	1042.5200761926797	105.95	0.66328	106.71	106.42	107.09	0.75977					30	12	3	0	0	0	0.04038	1	40146	40146		85.642	33.373	1	10920000			1812	4180	1125	1140	1804	1804					-0.00598536310712916
AEWEDGERF	9	Unmodified	_AEWEDGERF_					0	0	0		nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8;nc|ENSG00000214655|A7E2V4-2|ZSWIM8;ENST00000446546.2_1_10:75545483-75546011:+|nuORF;ZSWIM8|p.R856Efs*21|1|0.46|ENSG00000214655|chr10:73793984-73793984|C/-|frameshift_variant	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	MULTI-MSMS	A375_MHC_IP_R1	1	570.1434326171875	2	569.743628	1137.4727	-0.29422	-0.00016763	-0.25148	-0.00014328	-0.5457	-0.00031091	569.7435440974189	50.739	0.5579	50.739	50.51	51.068	0					17	10	2	0	0	0	0.06083	1	18017	18017		60.074	37.338	1	2511800			1813	9621	1126	1141	1805	1805					-0.09053502701135585
AEWEDGERF	9	Unmodified	_AEWEDGERF_					0	0	0		nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8;nc|ENSG00000214655|A7E2V4-2|ZSWIM8;ENST00000446546.2_1_10:75545483-75546011:+|nuORF;ZSWIM8|p.R856Efs*21|1|0.46|ENSG00000214655|chr10:73793984-73793984|C/-|frameshift_variant	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	MULTI-SECPEP	A375_MHC_IP_R1	1	570.199951171875	2	569.743628	1137.4727	-0.17158	-9.7757E-05	-0.12386	-7.057E-05	-0.29544	-0.00016833	569.7437468220236	51.5	0.40566	51.5	51.27	51.676	0					11	7	2	0	0	0	0.67539	1	18339	18339		21.537	14.248	1	1816900			1814	9621	1126	1141	1806	1806					-0.09053502701135585
AEWEDGERF	9	Unmodified	_AEWEDGERF_					0	0	0		nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8;nc|ENSG00000214655|A7E2V4-2|ZSWIM8;ENST00000446546.2_1_10:75545483-75546011:+|nuORF;ZSWIM8|p.R856Efs*21|1|0.46|ENSG00000214655|chr10:73793984-73793984|C/-|frameshift_variant	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	MULTI-MSMS	A375_MHC_IP_R2	2	570.1432495117188	2	569.743628	1137.4727	-0.52524	-0.00029925	-0.0756	-4.3073E-05	-0.60084	-0.00034232	569.7436240514226	50.111	0.60842	50.865	50.702	51.311	0.75406					15	11	2	0	0	0	0.19747	1	18865	18865		38.176	25.133	1	1739700			1815	9621	1126	1141	1807	1807					-0.09053502701135585
AEWEDGERF	9	Unmodified	_AEWEDGERF_					0	0	0		nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8;nc|ENSG00000214655|A7E2V4-2|ZSWIM8;ENST00000446546.2_1_10:75545483-75546011:+|nuORF;ZSWIM8|p.R856Efs*21|1|0.46|ENSG00000214655|chr10:73793984-73793984|C/-|frameshift_variant	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	MULTI-MSMS	A375_MHC_IP_R2	2	570.1987915039062	2	569.743628	1137.4727	-0.41012	-0.00023366	-1.3593	-0.00077448	-1.7695	-0.0010081	569.7433172143224	50.936	0.45356	51.69	51.412	51.866	0.75406					10	8	2	0	0	0	0.19747	1	19122	19122		38.176	18.919	1	1673900			1816	9621	1126	1141	1808	1808					-0.09053502701135585
AEWERRQRRRM	11	Unmodified	_AEWERRQRRRM_					0	0	0			REV__nc|ENSG00000093009|O75419-2|CDC45	REV__nc|ENSG00000093009|O75419-2|CDC45	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6401977539062	3	525.279541	1572.81679	-0.35803	-0.00018807	-1.1059	-0.00058089	-1.4639	-0.00076896	525.6134448143011	42.482	0.30361	42.482	42.233	42.537	0					9	5	3	0	0	0	1.0014	1	14729	14729		0.45452	0.37117	1	872090	+		1817	16980	1127	1142	1809	1809					0.053299152455792864
AEWEVQNRI	9	Unmodified	_AEWEVQNRI_					0	0	0		nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF;ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;ENST00000509936.5_1_12:112130513-112147506:+|nuORF;nc|ENSG00000111271|Q6JQN1-4|ACAD10;ENST00000507135.5_1_12:112130513-112159479:+|nuORF	nc|ENSG00000111271|Q6JQN1-2|ACAD10	nc|ENSG00000111271|Q6JQN1-2|ACAD10	MULTI-SECPEP	A375_MHC_IP_R1	1	573.1910400390625	2	572.790912	1143.56727	-0.21281	-0.0001219	-0.76583	-0.00043866	-0.97864	-0.00056056	572.7905491404822	54.772	0.50866	54.772	54.516	55.025	0					16	9	2	0	0	0	0.24324	1	19576	19576		53.833	9.9745	1	2462700			1818	2980	1128	1143	1810	1810					0.001230558408451543
AEWKDGLNEAW	11	Unmodified	_AEWKDGLNEAW_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000160460|Q9H254-3|SPTBN4;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-5|SPTBN4;nc|ENSG00000160460|Q9H254-4|SPTBN4	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000160460|Q9H254-3|SPTBN4	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	A375_MHC_IP_R1	1	660.2058715820312	2	659.806759	1317.59897	-0.41408	-0.00027321	-0.39285	-0.0002592	-0.80693	-0.00053242	659.8064002910138	78.023	0.50911	78.023	77.742	78.251	0					20	9	3	0	0	0	0.2687	1	28473	28473		67.081	67.081	1	3889800			1819	3298;6422	1129	1144	1811	1811					-0.047129961958717104
AEWKDGLNEAW	11	Unmodified	_AEWKDGLNEAW_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000160460|Q9H254-3|SPTBN4;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-5|SPTBN4;nc|ENSG00000160460|Q9H254-4|SPTBN4	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000160460|Q9H254-3|SPTBN4	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	A375_MHC_IP_R2	2	660.2059326171875	2	659.806759	1317.59897	-0.91056	-0.00060079	0.098169	6.4773E-05	-0.81239	-0.00053602	659.806756880219	77.378	0.55833	78.121	77.807	78.365	0.74293					18	10	2	0	0	0	0.30526	2	29386	29362;29386		63.227	37.469	1	2801500			1820	3298;6422	1129	1144	1812;1813	1813					-0.047129961958717104
AEWKSLEY	8	Unmodified	_AEWKSLEY_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	A375_MHC_IP_R2	2	513.6499633789062	2	513.250557	1024.48656	-0.83254	-0.0004273	0.005336	2.7387E-06	-0.82721	-0.00042456	513.2505259905593	55.562	0.55728	56.312	56.034	56.591	0.75075					19	10	2	0	0	0	0.16721	2	20976	20976;21002		75.761	41.658	1	6324700			1821	9866	1130	1145	1814;1815	1814					-0.024702252020460946
AEWPAQTNY	9	Unmodified	_AEWPAQTNY_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-SECPEP	A375_MHC_IP_R1	1	540.6434326171875	2	540.243264	1078.47197	-0.57376	-0.00030997	0.37216	0.00020106	-0.2016	-0.00010892	540.2434203083617	63.185	0.61433	63.185	62.914	63.529	0					23	11	3	0	0	0	0.10362	1	22826	22826		72.968	43.886	1	2718000			1822	1806	1131	1146	1816	1816					-0.06412297350175322
AEWPAQTNY	9	Unmodified	_AEWPAQTNY_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-SECPEP	A375_MHC_IP_R2	2	540.6429443359375	2	540.243264	1078.47197	-0.88172	-0.00047635	0.21473	0.00011601	-0.66699	-0.00036034	540.2432420812232	62.701	0.75998	63.444	63.028	63.788	0.74263					25	14	3	0	0	0	0.67483	1	23740	23740		14.838	2.3067	1	3947900			1823	1806	1131	1146	1817	1817					-0.06412297350175322
AEWSMRQY	8	Unmodified	_AEWSMRQY_					0	0	0			REV__ENSG00000163510|ENST00000410053|CWC22	REV__ENSG00000163510|ENST00000410053|CWC22	MULTI-SECPEP	A375_MHC_IP_R2	2	357.9292297363281	3	357.495648	1069.46511	-0.59622	-0.00021315	0.73984	0.00026449	0.14362	5.1345E-05	357.4958219316762	26.442	0.30464	27.102	26.957	27.262	0.65992					6	5	2	0	0	0	0.972	1	8913	8913		6.7232	0	1	1117500	+		1824	20371	1132	1147	1818	1818					-0.06683933502404216
AEWSSKTSY	9	Unmodified	_AEWSSKTSY_					0	0	0		ENST00000537218.1_1_12:110338138-110342619:+|nuORF;ENSG00000139437|ENST00000405876|TCHP	ENST00000537218.1_1_12:110338138-110342619:+|nuORF	ENST00000537218.1_1_12:110338138-110342619:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	530.1423950195312	2	529.743096	1057.47164	-1.2451	-0.0006596	0.3919	0.00020761	-0.85323	-0.00045199	529.743248348179	29.542	0.60692	30.241	29.981	30.588	0.69872					22	11	3	0	0	0	0.030891	1	10329	10329		74.2	20.367	1	3691900			1825	5078	1133	1148	1819	1819					-0.05479717070033985
AEWTEREKW	9	Unmodified	_AEWTEREKW_					0	0	0			REV__ENSG00000178217|ENST00000646907|SH2D4B	REV__ENSG00000178217|ENST00000646907|SH2D4B	MULTI-SECPEP	A375_MHC_IP_R1	1	412.5995788574219	3	412.199889	1233.57784	0.012676	5.2252E-06	-0.61389	-0.00025305	-0.60121	-0.00024782	412.19959980354105	19.444	0.30355	19.444	19.268	19.571	0					14	5	4	0	0	0	0.80101	1	4831	4831		2.7352	0	1	11543000	+		1826	21495	1134	1149	1820	1820					-0.02960961504709303
AEYDNFFQHL	10	Unmodified	_AEYDNFFQHL_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;ENST00000491646.1_1_2:122217554-122217677:-|nuORF	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-SECPEP	A375_MHC_IP_R1	1	642.687744140625	2	642.288202	1282.56185	-0.50621	-0.00032513	0.081482	5.2335E-05	-0.42473	-0.0002728	642.288194390666	100.74	0.70935	100.74	100.33	101.04	0					26	13	3	0	0	0	0.049712	1	37017	37017		128.93	96.147	1	4621400			1827	1576	1135	1150	1821	1821					-0.06812667741610312
AEYDNFFQHL	10	Unmodified	_AEYDNFFQHL_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;ENST00000491646.1_1_2:122217554-122217677:-|nuORF	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	A375_MHC_IP_R2	2	642.6884765625	2	642.288202	1282.56185	-0.4875	-0.00031312	0.0098009	6.295E-06	-0.4777	-0.00030682	642.28825589674	99.989	0.96672	100.75	100.32	101.29	0.76278					33	18	3	0	0	0	0.014421	1	37901	37901		89.401	63.133	1	3833600			1828	1576	1135	1150	1822	1822					-0.06812667741610312
AEYDNTQGALS	11	Unmodified	_AEYDNTQGALS_					0	0	0		nc|ENSG00000154783|Q6ZNL6-2|FGD5;ENSG00000154783|ENST00000285046|FGD5	nc|ENSG00000154783|Q6ZNL6-2|FGD5	nc|ENSG00000154783|Q6ZNL6-2|FGD5	MULTI-SECPEP	A375_MHC_IP_R1	1	390.28875732421875	3	390.175409	1167.5044	0.38043	0.00014843	3.0413	0.0011866	3.4217	0.0013351	390.51180148020137	35.804	0.3069	35.804	35.625	35.932	0					6	5	2	0	0	0	0.99676	1	11882	11882		0.40827	0	1	1092200			1829	6109	1136	1151	1823	1823					-0.0726555473784174
AEYDRPNLL	9	Unmodified	_AEYDRPNLL_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;ENSG00000006715|ENST00000310301|VPS41;nc|ENSG00000006715|P49754-3|VPS41;VPS41|p.P630S|1|0.28|ENSG00000006715|chr7:38752214-38752214|G/A|missense_variant;VPS41|p.P630L|1|0.09|ENSG00000006715|chr7:38752213-38752213|G/A|missense_variant	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-SECPEP	A375_MHC_IP_R1	1	546.1798706054688	2	545.780013	1089.54547	-0.43582	-0.00023786	0.14908	8.1366E-05	-0.28674	-0.0001565	545.7800720180052	56.644	0.9156	56.644	56.295	57.211	0					48	17	4	0	0	0	0.028087	1	20254	20254		96.367	58.393	1	20317000			1830	927	1137	1152	1824	1824					0.0042825109228488145
AEYDRPNLL	9	Unmodified	_AEYDRPNLL_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;ENSG00000006715|ENST00000310301|VPS41;nc|ENSG00000006715|P49754-3|VPS41;VPS41|p.P630S|1|0.28|ENSG00000006715|chr7:38752214-38752214|G/A|missense_variant;VPS41|p.P630L|1|0.09|ENSG00000006715|chr7:38752213-38752213|G/A|missense_variant	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-SECPEP	A375_MHC_IP_R2	2	546.235107421875	2	545.780013	1089.54547	-0.95503	-0.00052123	0.27574	0.00015049	-0.67928	-0.00037074	545.7801590556919	55.887	0.86529	56.638	56.287	57.152	0.75014					49	16	4	0	0	0	0.042716	1	21162	21162		86.332	55.695	1	20746000			1831	927	1137	1152	1825	1825					0.0042825109228488145
AEYFPTKPM	9	Unmodified	_AEYFPTKPM_					0	0	0		ENST00000527793.1_1_8:38124876-38126435:-|nuORF;ENST00000531823.5_1_8:38125951-38126678:-|nuORF;ENST00000528814.1_1_8:38126264-38126717:-|nuORF;nc|ENSG00000147535|Q8NEB5-4|PLPP5;nc|ENSG00000147535|Q8NEB5-2|PLPP5;nc|ENSG00000147535|Q8NEB5-3|PLPP5;ENSG00000147535|ENST00000424479|PLPP5	ENST00000527793.1_1_8:38124876-38126435:-|nuORF	ENST00000527793.1_1_8:38124876-38126435:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	542.6528930664062	2	542.26261	1082.51067	-0.97901	-0.00053088	-0.20448	-0.00011088	-1.1835	-0.00064176	542.2624021447084	54.983	0.20389	55.733	55.575	55.779	0.75075					5	3	2	0	0	0	0.65527	1	20704	20704		12.241	0	1	1070700			1832	5690	1138	1153	1826	1826					-0.02728708040035599
AEYFPTKPMF	10	Unmodified	_AEYFPTKPMF_					0	0	0		ENST00000527793.1_1_8:38124876-38126435:-|nuORF;ENST00000531823.5_1_8:38125951-38126678:-|nuORF;ENST00000528814.1_1_8:38126264-38126717:-|nuORF;nc|ENSG00000147535|Q8NEB5-4|PLPP5;nc|ENSG00000147535|Q8NEB5-2|PLPP5;nc|ENSG00000147535|Q8NEB5-3|PLPP5;ENSG00000147535|ENST00000424479|PLPP5	ENST00000527793.1_1_8:38124876-38126435:-|nuORF	ENST00000527793.1_1_8:38124876-38126435:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	616.1961059570312	2	615.796817	1229.57908	-0.33647	-0.0002072	0.33297	0.00020504	-0.0034998	-2.1552E-06	615.7971441132444	87.953	0.40743	87.953	87.644	88.052	0					12	7	2	0	0	0	0.79938	1	32245	32245		40.239	27.197	1	1682100			1833	5690	1139	1154	1827	1827					-0.026524634601855723
AEYFPTKPMF	10	Unmodified	_AEYFPTKPMF_					0	0	0		ENST00000527793.1_1_8:38124876-38126435:-|nuORF;ENST00000531823.5_1_8:38125951-38126678:-|nuORF;ENST00000528814.1_1_8:38126264-38126717:-|nuORF;nc|ENSG00000147535|Q8NEB5-4|PLPP5;nc|ENSG00000147535|Q8NEB5-2|PLPP5;nc|ENSG00000147535|Q8NEB5-3|PLPP5;ENSG00000147535|ENST00000424479|PLPP5	ENST00000527793.1_1_8:38124876-38126435:-|nuORF	ENST00000527793.1_1_8:38124876-38126435:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	616.2586669921875	2	615.796817	1229.57908	-0.512	-0.00031529	0.074008	4.5574E-05	-0.43799	-0.00026971	615.7969259888986	87.15	0.40444	87.883	87.662	88.067	0.733					18	7	3	0	0	0	0.29801	1	33174	33174		40.239	30.165	1	1828000			1834	5690	1139	1154	1828	1828					-0.026524634601855723
AEYFPTKPMF	10	Oxidation (M)	_AEYFPTKPM(Oxidation (M))F_		AEYFPTKPM(1)F		AEYFPTKPM(64)F	0	0	1		ENST00000527793.1_1_8:38124876-38126435:-|nuORF;ENST00000531823.5_1_8:38125951-38126678:-|nuORF;ENST00000528814.1_1_8:38126264-38126717:-|nuORF;nc|ENSG00000147535|Q8NEB5-4|PLPP5;nc|ENSG00000147535|Q8NEB5-2|PLPP5;nc|ENSG00000147535|Q8NEB5-3|PLPP5;ENSG00000147535|ENST00000424479|PLPP5	ENST00000527793.1_1_8:38124876-38126435:-|nuORF	ENST00000527793.1_1_8:38124876-38126435:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	624.1943359375	2	623.794275	1245.574	-0.41902	-0.00026138	-0.41989	-0.00026192	-0.83891	-0.00052331	623.7945055321909	72.814	0.507	72.814	72.575	73.082	0					19	9	3	0	0	0	0.24808	1	26517	26517		63.961	45.814	1	2477200			1835	5690	1139	1155	1829	1829		301			-0.03896767322794403
AEYGEIKNI	9	Unmodified	_AEYGEIKNI_					0	0	0		ENSG00000265241|ENST00000583313|RBM8A;nc|ENSG00000265241|Q9Y5S9-2|RBM8A	ENSG00000265241|ENST00000583313|RBM8A	ENSG00000265241|ENST00000583313|RBM8A	MULTI-SECPEP	A375_MHC_IP_R1	1	518.9712524414062	2	518.769114	1035.52368	-0.41667	-0.00021616	-0.082948	-4.3031E-05	-0.49962	-0.00025919	518.7690721409933	44.139	1.0202	44.139	43.757	44.777	0					68	19	5	0	0	0	5.1125E-05	1	15346	15346		171.09	118.82	1	198440000			1836	9958	1140	1156	1830	1830					0.007334463437246086
AEYGEIKNI	9	Unmodified	_AEYGEIKNI_					0	0	0		ENSG00000265241|ENST00000583313|RBM8A;nc|ENSG00000265241|Q9Y5S9-2|RBM8A	ENSG00000265241|ENST00000583313|RBM8A	ENSG00000265241|ENST00000583313|RBM8A	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1683349609375	2	518.769114	1035.52368	-0.55259	-0.00028667	-0.0659	-3.4187E-05	-0.61849	-0.00032086	518.7690844756827	43.332	1.5676	44.105	43.826	45.393	0.7724					85	30	5	0	0	0	0.0020135	1	16084	16084		171.09	89.473	1	225280000			1837	9958	1140	1156	1831	1831					0.007334463437246086
AEYGEIKNIHL	11	Unmodified	_AEYGEIKNIHL_					0	0	0		ENSG00000265241|ENST00000583313|RBM8A;nc|ENSG00000265241|Q9Y5S9-2|RBM8A	ENSG00000265241|ENST00000583313|RBM8A	ENSG00000265241|ENST00000583313|RBM8A	MULTI-MSMS	A375_MHC_IP_R1	1	429.61883544921875	3	429.562827	1285.66665	-0.11066	-4.7533E-05	-0.71833	-0.00030857	-0.82899	-0.0003561	429.5626641967103	57.338	0.4089	57.338	57.109	57.518	0					14	7	2	0	0	0	0.63742	1	20572	20572		20.411	4.8724	1	3081800			1838	9958	1141	1157	1832	1832					0.035244537349626626
AEYGEIKNIHL	11	Unmodified	_AEYGEIKNIHL_					0	0	0		ENSG00000265241|ENST00000583313|RBM8A;nc|ENSG00000265241|Q9Y5S9-2|RBM8A	ENSG00000265241|ENST00000583313|RBM8A	ENSG00000265241|ENST00000583313|RBM8A	MULTI-MSMS	A375_MHC_IP_R2	2	429.6187744140625	3	429.562827	1285.66665	-0.59515	-0.00025565	-0.76454	-0.00032842	-1.3597	-0.00058407	429.562677404996	56.541	0.56141	57.291	57	57.561	0.75015					20	10	3	0	0	0	0.61555	2	21354	21354;21398		22.109	7.9382	1	2974500			1839	9958	1141	1157	1833;1834	1833					0.035244537349626626
AEYGHFVDI	9	Unmodified	_AEYGHFVDI_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	A375_MHC_IP_R1	1	526.1482543945312	2	525.748182	1049.48181	-0.36771	-0.00019332	1.5362	0.00080767	1.1685	0.00061435	525.7489750704909	71.069	0.86867	71.069	70.597	71.465	0					30	13	3	0	0	0	0.030038	1	25806	25806		74.929	26.583	1	7615100			1840	1349	1142	1158	1835	1835					-0.040951093448029496
AEYGHFVDI	9	Unmodified	_AEYGHFVDI_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1478271484375	2	525.748182	1049.48181	-0.42857	-0.00022532	2.0904	0.001099	1.6618	0.0008737	525.749233261599	70.392	0.75964	71.126	70.693	71.453	0.73421					34	14	3	0	0	0	0.083712	1	26651	26651		74.929	26.583	1	6348500			1841	1349	1142	1158	1836	1836					-0.040951093448029496
AEYGRIIKEQ	10	Unmodified	_AEYGRIIKEQ_					0	0	0			REV__nc|ENSG00000162620|A6PVS8-2|LRRIQ3	REV__nc|ENSG00000162620|A6PVS8-2|LRRIQ3	MULTI-MSMS	A375_MHC_IP_R2	2	402.94879150390625	3	402.887422	1205.64044	-0.084421	-3.4012E-05	-0.15523	-6.2539E-05	-0.23965	-9.6552E-05	402.88734397501577	39.316	0.8642	40.09	39.812	40.676	0.77451					52	16	6	0	0	0	0.71175	1	14696	14696		7.0371	0.41363	1	83326000	+		1842	20276	1143	1159	1837	1837					0.04584184563486815
AEYIEKVVY	9	Unmodified	_AEYIEKVVY_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1;ENST00000472714.1_1_7:107564398-107569844:-|nuORF	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-SECPEP	A375_MHC_IP_R1	1	556.638671875	2	557.294965	1112.57538	-0.55685	-0.00031033	0.1214	6.7657E-05	-0.43544	-0.00024267	557.2948490588637	57.949	1.0148	57.949	57.364	58.379	0					51	19	4	0	0	0	0.044425	1	20804	20804		96.936	47.003	1	34597000			1843	1971	1144	1160	1838	1838					0.023591900376231933
AEYIEKVVY	9	Unmodified	_AEYIEKVVY_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1;ENST00000472714.1_1_7:107564398-107569844:-|nuORF	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-SECPEP	A375_MHC_IP_R2	2	557.6943359375	2	557.294965	1112.57538	-1.1444	-0.00063777	0.31309	0.00017449	-0.8313	-0.00046328	557.2950614279065	57.195	1.0185	57.945	57.306	58.324	0.7501					42	19	4	0	0	0	0.062502	1	21664	21664		83.429	39.57	1	37314000			1844	1971	1144	1160	1839	1839					0.023591900376231933
AEYIQKNVQLY	11	Unmodified	_AEYIQKNVQLY_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	A375_MHC_IP_R1	1	685.762939453125	2	684.861534	1367.70852	-0.6801	-0.00046577	0.98875	0.00067716	0.30865	0.00021138	684.862043658726	58.338	0.35484	58.338	58.126	58.481	0					16	6	3	0	0	0	0.4047	1	20968	20968		38.615	22.466	1	4603700			1845	4022	1145	1161	1840	1840					0.039370094234755015
AEYIQKNVQLY	11	Unmodified	_AEYIQKNVQLY_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-SECPEP	A375_MHC_IP_R2	2	685.2606811523438	2	684.861534	1367.70852	-0.96649	-0.00066191	0.3589	0.0002458	-0.60759	-0.00041611	684.8616021157355	57.675	0.40739	58.424	58.17	58.578	0.74895					18	7	4	0	0	0	0.040169	1	21794	21794		101.54	61.594	1	4086500			1846	4022	1145	1161	1841	1841					0.039370094234755015
AEYLHWDVM	9	Unmodified	_AEYLHWDVM_					0	0	0		MYOM2|p.T1141M|1|0.53|ENSG00000036448|chr8:2117921-2117921|C/T|missense_variant	MYOM2|p.T1141M|1|0.53|ENSG00000036448|chr8:2117921-2117921|C/T|missense_variant	MYOM2|p.T1141M|1|0.53|ENSG00000036448|chr8:2117921-2117921|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	582.6632080078125	2	582.263142	1162.51173	-0.67954	-0.00039567	0.8902	0.00051833	0.21066	0.00012266	582.2633972535509	61.7	1.7176	62.445	61.668	63.386	0.74504					61	33	3	0	0	0	0.62767	1	23316	23316		23.148	0	1	34564000			1847	14442	1146	1162	1842	1842					-0.06302493671159937
AEYLIKEGY	9	Unmodified	_AEYLIKEGY_					0	0	0		ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-SECPEP	A375_MHC_IP_R1	1	543.64501953125	2	543.279315	1084.54408	-0.71928	-0.00039077	0.46124	0.00025058	-0.25804	-0.00014019	543.2794304895913	52.724	0.71177	52.724	52.387	53.099	0					37	13	4	0	0	0	0.40495	1	18812	18812		55.503	40.664	1	31372000			1848	1809	1147	1163	1843	1843					0.005186170035358373
AEYLIKEGY	9	Unmodified	_AEYLIKEGY_					0	0	0		ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-SECPEP	A375_MHC_IP_R2	2	543.6445922851562	2	543.279315	1084.54408	-1.1656	-0.00063324	0.19411	0.00010546	-0.97147	-0.00052778	543.2793368019406	52.081	0.61038	52.834	52.524	53.134	0.75225					28	11	4	0	0	0	0.078412	1	19624	19624		100.09	56.318	1	30181000			1849	1809	1147	1163	1844	1844					0.005186170035358373
AEYLLSSLIN	10	Unmodified	_AEYLLSSLIN_					0	0	0		ENST00000509520.5_1_1:179086401-179112191:-|nuORF;ENST00000504324.1_1_1:179086401-179112191:-|nuORF;nc|ENSG00000143322|P42684-8|ABL2;ABL2|p.E637Kfs*21|1|0.58|ENSG00000143322|chr1:179109358-179109358|C/-|frameshift_variant;nc|ENSG00000143322|P42684-4|ABL2;nc|ENSG00000143322|P42684-7|ABL2;nc|ENSG00000143322|P42684-10|ABL2;nc|ENSG00000143322|P42684-5|ABL2;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2	ENST00000509520.5_1_1:179086401-179112191:-|nuORF	ENST00000509520.5_1_1:179086401-179112191:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	374.3582458496094	3	374.87289	1121.59684	0.32698	0.00012258	-0.14781	-5.541E-05	0.17917	6.7166E-05	374.87279032194846	43.971	0.51003	43.971	43.706	44.216	0					18	9	3	0	0	0	0.90513	1	15384	15384		7.4771	1.6936	1	2015300			1850	23	1148	1164	1845	1845					0.04090575066356905
AEYMEEVAHL	10	Unmodified	_AEYMEEVAHL_					0	0	0		ENSG00000260286|ENST00000565469|ARMH2	ENSG00000260286|ENST00000565469|ARMH2	ENSG00000260286|ENST00000565469|ARMH2	MULTI-MSMS	A375_MHC_IP_R2	2	398.24969482421875	3	397.849868	1190.52777	-0.42906	-0.0001707	3.5579	0.0014155	3.1288	0.0012448	397.84991301384855	22.274	0.81594	22.893	22.643	23.459	0.61932					52	15	5	0	0	0	0.60556	1	7065	7065		12.873	0	1	6903000			1851	9929	1149	1165	1846	1846					-0.05986832224880345
AEYNRYTW	8	Unmodified	_AEYNRYTW_					0	0	0		nc|ENSG00000004866|Q9NRC1-7|ST7;ENST00000487459.5_1_7:116660544-116830896:+|nuORF;nc|ENSG00000004866|Q9NRC1-6|ST7;nc|ENSG00000004866|Q9NRC1-5|ST7;nc|ENSG00000004866|Q9NRC1-4|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1|ST7	nc|ENSG00000004866|Q9NRC1-7|ST7	nc|ENSG00000004866|Q9NRC1-7|ST7	MSMS	A375_MHC_IP_R2	2	551.687255859375	2	551.751256	1101.48796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.876	1	53.627	53.127	54.127	0.75105								0	0	0	0.16876	1	19944	19944		16.942	2.104	1				1852	875	1150	1166	1847	1847					-0.058725911133024056
AEYPAAPVY	9	Unmodified	_AEYPAAPVY_					0	0	0		ENSG00000119446|ENST00000417201|RBM18	ENSG00000119446|ENST00000417201|RBM18	ENSG00000119446|ENST00000417201|RBM18	MULTI-MSMS	A375_MHC_IP_R1	1	980.4743041992188	1	980.472374	979.465098	-0.071652	-7.0253E-05	-0.16885	-0.00016555	-0.2405	-0.0002358	980.4722276309802	66.691	0.86795	66.691	66.275	67.143	0					27	16	2	0	0	0	0.03063	1	24088	24088		74.423	58.576	1	7322500			1853	3595	1151	1167	1848	1848					-0.025456102307657602
AEYPAAPVY	9	Unmodified	_AEYPAAPVY_					0	0	0		ENSG00000119446|ENST00000417201|RBM18	ENSG00000119446|ENST00000417201|RBM18	ENSG00000119446|ENST00000417201|RBM18	MULTI-MATCH	A375_MHC_IP_R2	2		1	980.472374	979.465098	-0.19333	-0.00018956	-0.049686	-4.8716E-05	-0.24302	-0.00023827	980.4722136143682	66.103	0.61435	66.841	66.526	67.14	0.73811	0.075149	5.9275E-05	NaN	74.423	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8185900			1854	3595	1151	1167							-0.025456102307657602
AEYPAVKF	8	Unmodified	_AEYPAVKF_					0	0	0		nc|ENSG00000136940|Q13371-2|PDCL;ENSG00000136940|ENST00000259467|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	MULTI-SECPEP	A375_MHC_IP_R1	1	463.16864013671875	2	462.744911	923.475269	-0.29792	-0.00013786	0.033561	1.553E-05	-0.26436	-0.00012233	462.7448757415377	58.814	1.0174	58.814	58.43	59.448	0					59	19	4	0	0	0	0.4193	1	21100	21100		68.081	32.037	1	30282000			1855	4847	1152	1168	1849	1849					0.010469974944726346
AEYPAVKF	8	Unmodified	_AEYPAVKF_					0	0	0		nc|ENSG00000136940|Q13371-2|PDCL;ENSG00000136940|ENST00000259467|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	MULTI-SECPEP	A375_MHC_IP_R2	2	463.1445007324219	2	462.744911	923.475269	-0.80504	-0.00037253	0.16967	7.8515E-05	-0.63537	-0.00029401	462.7449166067825	58.054	1.0647	58.803	58.375	59.44	0.74894					53	20	4	0	0	0	0.26691	1	21902	21902		68.081	32.037	1	26850000			1856	4847	1152	1168	1850	1850					0.010469974944726346
AEYPDSFGHY	10	Unmodified	_AEYPDSFGHY_					0	0	0		ENSG00000168282|ENST00000305386|MGAT2	ENSG00000168282|ENST00000305386|MGAT2	ENSG00000168282|ENST00000305386|MGAT2	MULTI-MSMS	A375_MHC_IP_R2	2	593.645751953125	2	593.246003	1184.47745	-1.157	-0.00068638	0.26446	0.00015689	-0.89253	-0.00052949	593.246114610845	53.27	0.5114	54.021	53.842	54.353	0.75105					13	9	2	0	0	0	0.47932	1	20114	20114		41.84	27.934	1	2179200			1857	7283	1153	1169	1851	1851					-0.10740618558361348
AEYPEGFEI	9	Unmodified	_AEYPEGFEI_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	A375_MHC_IP_R1	1	528.1403198242188	2	527.740022	1053.46549	-0.52134	-0.00027513	-0.89041	-0.00046991	-1.4118	-0.00074504	527.7400662177871	99.736	0.80563	99.736	99.473	100.28	0					30	15	3	0	0	0	0.22528	1	36693	36693		36.127	11.453	1	1811700			1858	1458	1154	1170	1852	1852					-0.05910235301553257
AEYPEGFEI	9	Unmodified	_AEYPEGFEI_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	A375_MHC_IP_R2	2	528.1397094726562	2	527.740022	1053.46549	-0.33499	-0.00017679	-1.1405	-0.00060186	-1.4754	-0.00077865	527.7397350990062	99.157	0.86458	99.917	99.403	100.27	0.75977					31	16	3	0	0	0	0.026268	1	37606	37606		78.149	39.998	1	3003800			1859	1458	1154	1170	1853	1853					-0.05910235301553257
AEYPELRGVF	10	Unmodified	_AEYPELRGVF_					0	0	0		ENST00000409011.5_2_2:39005336-39005417:+|nuORF	ENST00000409011.5_2_2:39005336-39005417:+|nuORF	ENST00000409011.5_2_2:39005336-39005417:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	591.2034301757812	2	590.803488	1179.59242	-0.53598	-0.00031666	-0.19874	-0.00011742	-0.73472	-0.00043408	590.8034165075787	85.896	0.65829	85.896	85.616	86.274	0					28	12	3	0	0	0	0.69834	1	31490	31490		35.612	20.364	1	4180200			1860	11617	1155	1171	1854	1854					0.009811106434199246
AEYPELRGVF	10	Unmodified	_AEYPELRGVF_					0	0	0		ENST00000409011.5_2_2:39005336-39005417:+|nuORF	ENST00000409011.5_2_2:39005336-39005417:+|nuORF	ENST00000409011.5_2_2:39005336-39005417:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	591.2036743164062	2	590.803488	1179.59242	-0.419	-0.00024755	-0.33226	-0.0001963	-0.75127	-0.00044385	590.8031833948438	85.214	0.66409	85.95	85.626	86.29	0.73602					28	12	3	0	0	0	0.67395	1	32400	32400		37.075	20.926	1	4206600			1861	11617	1155	1171	1855	1855					0.009811106434199246
AEYPFSSEQKW	11	Unmodified	_AEYPFSSEQKW_					0	0	0		nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1;nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1	nc|ENSG00000017260|P98194-4|ATP2C1	nc|ENSG00000017260|P98194-4|ATP2C1	MULTI-MSMS	A375_MHC_IP_R1	1	686.714599609375	2	686.314417	1370.61428	-0.30798	-0.00021137	0.22367	0.00015351	-0.084306	-5.786E-05	686.3145144075498	70.005	0.55688	70.005	69.732	70.289	0					28	10	4	0	0	0	0.023034	2	25387	25387;25436		85.764	56.327	1	7832200			1862	1040	1156	1172	1856;1857	1856					-0.05620129398675999
AEYPFSSEQKW	11	Unmodified	_AEYPFSSEQKW_					0	0	0		nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1;nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1	nc|ENSG00000017260|P98194-4|ATP2C1	nc|ENSG00000017260|P98194-4|ATP2C1	MULTI-MSMS	A375_MHC_IP_R2	2	686.7135009765625	2	686.314417	1370.61428	-0.56995	-0.00039116	-0.0996	-6.8357E-05	-0.66955	-0.00045952	686.3142430161216	69.451	0.55767	70.185	69.931	70.488	0.73421					26	10	4	0	0	0	0.30351	2	26293	26293;26328		46.475	36.16	1	6281400			1863	1040	1156	1172	1858;1859	1858					-0.05620129398675999
AEYPHEVPQ	9	Unmodified	_AEYPHEVPQ_					0	0	0		ENSG00000163481|ENST00000295704|RNF25;ENST00000463188.5_1_2:219529923-219536693:-|nuORF	ENSG00000163481|ENST00000295704|RNF25	ENSG00000163481|ENST00000295704|RNF25	MULTI-MSMS	A375_MHC_IP_R2	2	535.2257080078125	2	535.251089	1068.48762	-1.1661	-0.00062416	-1.4557	-0.00077918	-2.6218	-0.0014033	535.2503873558846	37.445	0.66405	38.216	37.968	38.632	0.7709					17	12	2	0	0	0	0.60101	1	13663	13663		14.838	0	1	2491400			1864	6670	1157	1173	1860	1860					-0.043880108331450174
AEYPHEVPQ	9	Unmodified	_AEYPHEVPQ_					0	0	0		ENSG00000163481|ENST00000295704|RNF25;ENST00000463188.5_1_2:219529923-219536693:-|nuORF	ENSG00000163481|ENST00000295704|RNF25	ENSG00000163481|ENST00000295704|RNF25	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	535.251089	1068.48762	-1.0449	-0.00055927	-1.8383	-0.00098394	-2.8831	-0.0015432	535.2499793913108	38.143	0.45867	38.143	37.913	38.371	0	-0.036453	-8.7495E-05	NaN	14.838	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4190800			1865	6670	1157	1173							-0.043880108331450174
AEYQFTGTY	9	Unmodified	_AEYQFTGTY_					0	0	0		ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4;ENST00000504256.5_1_4:25418140-25418221:+|nuORF;ENST00000506973.1_1_4:25418140-25419370:+|nuORF	ENSG00000053900|ENST00000315368|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	MULTI-MSMS	A375_MHC_IP_R1	1	540.6372680664062	2	540.237647	1078.46074	-0.34718	-0.00018756	0.34018	0.00018378	-0.0070004	-3.7819E-06	540.2376098662653	69.065	0.45632	69.065	68.819	69.275	0					14	8	2	0	0	0	0.070818	1	25094	25094		56.177	32.156	1	1640300			1866	1252	1158	1174	1861	1861					-0.07535119444310112
AEYQFTGTY	9	Unmodified	_AEYQFTGTY_					0	0	0		ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4;ENST00000504256.5_1_4:25418140-25418221:+|nuORF;ENST00000506973.1_1_4:25418140-25419370:+|nuORF	ENSG00000053900|ENST00000315368|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	MULTI-MSMS	A375_MHC_IP_R2	2	540.6373291015625	2	540.237647	1078.46074	-0.73501	-0.00039708	-0.086799	-4.6892E-05	-0.82181	-0.00044397	540.2376622643384	68.555	0.50624	69.29	69.018	69.525	0.73511					23	9	4	0	0	0	0.070818	1	25995	25995		56.177	20.05	1	2297500			1867	1252	1158	1174	1862	1862					-0.07535119444310112
AEYSVNIRY	9	Unmodified	_AEYSVNIRY_					0	0	0		ENST00000606965.5_1_6:158535743-158540110:-|nuORF;ENST00000607742.5_1_6:158532400-158537340:-|nuORF;ENSG00000122335|ENST00000647468|SERAC1	ENST00000606965.5_1_6:158535743-158540110:-|nuORF	ENST00000606965.5_1_6:158535743-158540110:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	558.2152099609375	2	557.780013	1113.54547	-0.86845	-0.00048441	-0.65475	-0.0003652	-1.5232	-0.00084961	557.7799236834773	55.156	0.35634	55.907	55.678	56.034	0.75075					10	6	2	0	0	0	0.44024	1	20856	20856		22.736	5.794	1	1353100			1868	3772	1159	1175	1863	1863					-0.006757489077244827
AEYTGPKLF	9	Unmodified	_AEYTGPKLF_					0	0	0		ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	MULTI-MSMS	A375_MHC_IP_R1	1	513.19287109375	2	513.26875	1024.52295	-0.40453	-0.00020763	-0.13563	-6.9614E-05	-0.54016	-0.00027725	513.2687241839452	70.979	0.5629	70.979	70.648	71.211	0					25	10	3	0	0	0	0.073067	1	25762	25762		55.503	19.376	1	4634400			1869	4255	1160	1176	1864	1864					0.011666516946434058
AEYTGPKLF	9	Unmodified	_AEYTGPKLF_					0	0	0		ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	MULTI-MSMS	A375_MHC_IP_R2	2	513.6683349609375	2	513.26875	1024.52295	-0.69692	-0.00035771	-0.41113	-0.00021102	-1.108	-0.00056872	513.2685149504792	70.166	0.60846	70.9	70.591	71.2	0.73421					24	11	3	0	0	0	0.024574	1	26592	26592		79.596	23.419	1	3184400			1870	4255	1160	1176	1865	1865					0.011666516946434058
AEYVHGSQAW	10	Unmodified	_AEYVHGSQAW_					0	0	0		ENSG00000166326|ENST00000299413|TRIM44	ENSG00000166326|ENST00000299413|TRIM44	ENSG00000166326|ENST00000299413|TRIM44	MULTI-MSMS	A375_MHC_IP_R1	1	574.25341796875	2	574.261988	1146.50942	0.057104	3.2793E-05	0.025094	1.4411E-05	0.082198	4.7203E-05	574.7633831987773	39.118	0.25497	39.118	38.983	39.238	0					9	4	3	0	0	0	0.36067	1	13307	13307		36.506	22.6	1	1328500			1871	7058	1161	1177	1866	1866					-0.05797206084571371
AEYVSAREW	9	Unmodified	_AEYVSAREW_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1;ENST00000496458.1_1_2:198262707-198263303:-|nuORF	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MSMS	A375_MHC_IP_R1	1	555.6864013671875	2	555.764363	1109.51417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.873	1	47.873	47.373	48.373	0								0	0	0	0.11801	1	16858	16858		36.506	7.4246	1				1872	3317	1162	1178	1867	1867					-0.036203219417984656
AEYVSAREW	9	Unmodified	_AEYVSAREW_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1;ENST00000496458.1_1_2:198262707-198263303:-|nuORF	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-SECPEP	A375_MHC_IP_R2	2	555.6867065429688	2	555.764363	1109.51417	-0.58481	-0.00032501	0.45157	0.00025097	-0.13324	-7.4049E-05	555.7639463332031	47.235	0.3068	47.996	47.766	48.073	0.76128					10	5	3	0	0	0	0.73008	1	17639	17639		12.241	0	1	1731100			1873	3317	1162	1178	1868	1868					-0.036203219417984656
AEYYGPSLF	9	Unmodified	_AEYYGPSLF_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.S3306Afs*6|1|0.29|ENSG00000086758|chrX:53549078-53549079|-/ACGC|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	A375_MHC_IP_R1	1	1046.884765625	1	1046.48294	1045.47566	0.29473	0.00030843	0.63266	0.00066206	0.92738	0.00097049	1046.4837015239348	111.27	0.71667	111.27	110.85	111.57	0					27	13	3	0	0	0	0.10103	1	40857	40857		62.573	35.689	1	7055100			1874	1846	1163	1179	1869	1869					-0.045256275763449594
AEYYGPSLF	9	Unmodified	_AEYYGPSLF_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.S3306Afs*6|1|0.29|ENSG00000086758|chrX:53549078-53549079|-/ACGC|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MATCH	A375_MHC_IP_R2	2		1	1046.48294	1045.47566	0.21431	0.00022427	0.63192	0.0006613	0.84624	0.00088557	1046.4840563590801	110.49	0.76463	111.23	110.78	111.55	0.73691	-0.021202	-4.4069E-07	NaN	62.573	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5079800			1875	1846	1163	1179							-0.045256275763449594
AEYYTIAMSY	10	Unmodified	_AEYYTIAMSY_					0	0	0			REV__TTC21B|p.Y1260Ifs*9|1|0.17|ENSG00000123607|chr2:165880706-165880706|A/-|frameshift_variant	REV__TTC21B|p.Y1260Ifs*9|1|0.17|ENSG00000123607|chr2:165880706-165880706|A/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	606.5071411132812	2	606.26809	1210.52163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.9	1	101.67	101.17	102.17	0.76278								0	0	0	0.15158	1	38253	38253		14.838	2.3067	1		+		1876	18252	1164	1180	1870	1870					-0.07521350456386244
AFCVSLDESKY	11	Unmodified	_AFCVSLDESKY_					0	0	0			REV__ENST00000473067.1_1_2:37315561-37321362:+|nuORF	REV__ENST00000473067.1_1_2:37315561-37321362:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	631.6907958984375	2	631.292096	1260.56964	-1.0377	-0.00065511	-0.097241	-6.1387E-05	-1.135	-0.0007165	631.291848083581	49.922	0.7137	50.676	50.394	51.108	0.75406					24	13	2	0	0	0	0.73016	1	18775	18775		8.7454	0.83525	1	3373000	+		1877	25142	1165	1181	1871	1871					-0.050222765363514554
AFDRPSLF	8	Unmodified	_AFDRPSLF_					0	0	0		ENSG00000249709|ENST00000339282|ZNF564;ENST00000593682.1_1_19:12637262-12688404:-|nuORF	ENSG00000249709|ENST00000339282|ZNF564	ENSG00000249709|ENST00000339282|ZNF564	MULTI-SECPEP	A375_MHC_IP_R1	1	477.147705078125	2	476.747985	951.481417	-0.49768	-0.00023727	-0.31602	-0.00015066	-0.8137	-0.00038793	476.7478156947282	77.562	0.50732	77.562	77.286	77.793	0					15	9	2	0	0	0	0.72637	1	28311	28311		39.95	27.418	1	2605500			1878	9840	1166	1182	1872	1872					0.0037351572600528016
AFDRPSLF	8	Unmodified	_AFDRPSLF_					0	0	0		ENSG00000249709|ENST00000339282|ZNF564;ENST00000593682.1_1_19:12637262-12688404:-|nuORF	ENSG00000249709|ENST00000339282|ZNF564	ENSG00000249709|ENST00000339282|ZNF564	MULTI-SECPEP	A375_MHC_IP_R2	2	477.14788818359375	2	476.747985	951.481417	-0.53125	-0.00025327	0.21244	0.00010128	-0.31881	-0.00015199	476.7479795916634	76.777	0.50642	77.517	77.199	77.705	0.74052					22	9	3	0	0	0	0.6033	1	29148	29148		56.177	24.06	1	2185800			1879	9840	1166	1182	1873	1873					0.0037351572600528016
AFDYPSRF	8	Unmodified	_AFDYPSRF_					0	0	0		ENSG00000196646|ENST00000343979|ZNF136;ENST00000464860.1_1_19:12296590-12298813:+|nuORF	ENSG00000196646|ENST00000343979|ZNF136	ENSG00000196646|ENST00000343979|ZNF136	MULTI-MSMS	A375_MHC_IP_R1	1	501.6205139160156	2	501.737617	1001.46068	-0.2808	-0.00014089	0.41776	0.00020961	0.13696	6.8716E-05	501.73767627925696	62.869	0.35794	62.869	62.66	63.018	0					10	6	2	0	0	0	0.77028	1	22678	22678		14.838	2.3067	1	901090			1880	9068	1167	1183	1874	1874					-0.03999074653665957
AFEASREV	8	Unmodified	_AFEASREV_					0	0	0			REV__nc|ENSG00000178177|Q8N3X6|LCORL	REV__nc|ENSG00000178177|Q8N3X6|LCORL	MULTI-MSMS	A375_MHC_IP_R2	2	455.1271057128906	2	454.727249	907.439946	-0.41584	-0.0001891	-0.013881	-6.3119E-06	-0.42972	-0.00019541	454.72719795836855	35.616	0.40458	36.379	36.183	36.587	0.76338					11	7	2	0	0	0	0.77374	1	12957	12957		13.906	1.3745	1	1684600	+		1881	27381	1168	1184	1875	1875					-0.01747665033337853
AFEKDYNL	8	Unmodified	_AFEKDYNL_					0	0	0		ANK3|p.S2024F|1|0.6|ENSG00000151150|chr10:60074810-60074810|G/A|missense_variant	ANK3|p.S2024F|1|0.6|ENSG00000151150|chr10:60074810-60074810|G/A|missense_variant	ANK3|p.S2024F|1|0.6|ENSG00000151150|chr10:60074810-60074810|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	500.22137451171875	2	500.242732	998.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.604	1	42.604	42.104	43.104	0								0	0	0	0.16876	1	14770	14770		9.3474	2.6243	1				1882	138	1169	1185	1876	1876					-0.02838511719107828
AFFARDEL	8	Unmodified	_AFFARDEL_					0	0	0		ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33;nc|ENSG00000077254|Q8TEY7-3|USP33;ENST00000461986.5_1_1:78183501-78187881:-|nuORF	ENSG00000077254|ENST00000370794|USP33	ENSG00000077254|ENST00000370794|USP33	MULTI-SECPEP	A375_MHC_IP_R1	1	485.1452331542969	2	484.745442	967.476331	-0.6701	-0.00032483	-0.065479	-3.1741E-05	-0.73558	-0.00035657	484.7454065976673	68.184	0.45782	68.184	67.955	68.412	0					15	8	2	0	0	0	0.92091	1	24709	24709		26.268	4.5215	1	2385900			1883	1651	1170	1186	1877	1877					-0.008707881366376569
AFFATHCTF	9	Unmodified	_AFFATHCTF_					0	0	0			REV__ENST00000472488.5_1_1:160085570-160106822:+|nuORF	REV__ENST00000472488.5_1_1:160085570-160106822:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	523.0828247070312	2	522.73402	1043.45349	-0.55479	-0.00029001	-3.2649	-0.0017067	-3.8197	-0.0019967	522.73230670755	32.065	0.30957	32.065	31.87	32.179	0					7	5	2	0	0	0	0.40041	1	10351	10351		38.151	2.107	1	1236100	+		1884	16255	1171	1187	1878	1878					-0.06650130525758868
AFFDTEASYL	10	Unmodified	_AFFDTEASYL_					0	0	0		CNTNAP4|p.S796F|1|0.16|ENSG00000152910|chr16:76521161-76521161|C/T|missense_variant	CNTNAP4|p.S796F|1|0.16|ENSG00000152910|chr16:76521161-76521161|C/T|missense_variant	CNTNAP4|p.S796F|1|0.16|ENSG00000152910|chr16:76521161-76521161|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	582.3228759765625	2	582.266404	1162.51826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.998	1	92.737	92.237	93.237	0.73902								0	0	0	0.15417	1	34988	34988		7.2892	0.56607	1				1885	552	1172	1188	1879	1879					-0.05650277238760282
AFFGRSANL	9	Unmodified	_AFFGRSANL_					0	0	0			REV__ENSG00000090861|ENST00000261772|AARS1	REV__ENSG00000090861|ENST00000261772|AARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	492.1585388183594	2	491.758884	981.503215	-0.35761	-0.00017586	0.11573	5.6913E-05	-0.24188	-0.00011895	491.7588336558716	59.117	0.51004	59.117	58.887	59.397	0					21	9	3	0	0	0	0.28216	1	21252	21252		49.933	3.0121	1	3595800	+		1886	16933	1173	1189	1880	1880					0.011723204745521798
AFFGRSANL	9	Unmodified	_AFFGRSANL_					0	0	0			REV__ENSG00000090861|ENST00000261772|AARS1	REV__ENSG00000090861|ENST00000261772|AARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	492.1585693359375	2	491.758884	981.503215	-0.8123	-0.00039946	0.27497	0.00013522	-0.53733	-0.00026424	491.75884915920255	58.198	0.60797	58.947	58.679	59.287	0.74894					22	11	3	0	0	0	0.28216	1	22041	22041		49.933	3.0121	1	3699800	+		1887	16933	1173	1189	1881	1881					0.011723204745521798
AFFKKSELI	9	Unmodified	_AFFKKSELI_					0	0	0		ENSG00000196458|ENST00000360187|ZNF605;nc|ENSG00000196458|Q86T29-2|ZNF605	ENSG00000196458|ENST00000360187|ZNF605	ENSG00000196458|ENST00000360187|ZNF605	MULTI-SECPEP	A375_MHC_IP_R2	2	542.1973876953125	2	541.815867	1081.61718	-0.74952	-0.0004061	0.71541	0.00038762	-0.034112	-1.8482E-05	541.8160613002937	87.73	0.30379	88.461	88.266	88.57	0.7318					9	5	2	0	0	0	0.62767	1	33311	33311		16.942	4.4107	1	918960			1888	9045	1174	1190	1882	1882					0.07963790516805602
AFFRWKLYPRM	11	Unmodified	_AFFRWKLYPRM_					0	0	0		HAO1|p.S45F|1|0.46|ENSG00000101323|chr20:7940289-7940289|G/A|missense_variant	HAO1|p.S45F|1|0.46|ENSG00000101323|chr20:7940289-7940289|G/A|missense_variant	HAO1|p.S45F|1|0.46|ENSG00000101323|chr20:7940289-7940289|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	505.6456298828125	3	505.607825	1513.80165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.123	1	51.123	50.623	51.623	0								0	0	0	0.16309	1	18135	18135		2.6312	1.1761	1				1889	14097	1175	1191	1883	1883					0.06529655395706868
AFGGSRIPR	9	Unmodified	_AFGGSRIPR_					0	0	0		ENST00000237536.8_2_20:35410688-35410808:-|nuORF	ENST00000237536.8_2_20:35410688-35410808:-|nuORF	ENST00000237536.8_2_20:35410688-35410808:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	481.1719970703125	2	480.772326	959.530098	-0.58146	-0.00027955	-0.024438	-1.1749E-05	-0.6059	-0.0002913	480.7722773187658	31.823	0.76185	32.559	31.993	32.755	0.73691					22	14	2	0	0	0	0.71541	1	11256	11256		16.942	2.3606	1	5412100			1890	10162	1176	1192	1884	1884					0.04871429085744694
AFGKYQMNVQ	10	Unmodified	_AFGKYQMNVQ_					0	0	0		ENST00000326505.3_1_3:182989020-182989101:+|nuORF	ENST00000326505.3_1_3:182989020-182989101:+|nuORF	ENST00000326505.3_1_3:182989020-182989101:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	593.6873168945312	2	593.289691	1184.56483	-0.50915	-0.00030207	-2.6093	-0.0015481	-3.1184	-0.0018501	593.2889115161296	40.995	0.70726	40.995	40.712	41.419	0					17	13	3	0	0	0	0.70012	1	14162	14162		12.241	2.1667	1	2367200			1891	10733	1177	1193	1885	1885					-0.020071158884547913
AFGKYQMNVQ	10	Unmodified	_AFGKYQMNVQ_					0	0	0		ENST00000326505.3_1_3:182989020-182989101:+|nuORF	ENST00000326505.3_1_3:182989020-182989101:+|nuORF	ENST00000326505.3_1_3:182989020-182989101:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	593.289691	1184.56483	-0.6255	-0.00037111	-3.4914	-0.0020714	-4.1169	-0.0024425	593.2879398394658	40.282	0.40543	41.056	40.879	41.285	0.77451	0.030876	-0.00052766	NaN	12.241	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2587800			1892	10733	1177	1193							-0.020071158884547913
AFHERNRYHS	10	Unmodified	_AFHERNRYHS_					0	0	0			REV__nc|ENSG00000160551|Q7L7X3-2|TAOK1	REV__nc|ENSG00000160551|Q7L7X3-2|TAOK1	MULTI-SECPEP	A375_MHC_IP_R2	2	439.1322021484375	3	439.546282	1315.61702	-0.78694	-0.0003459	-0.32459	-0.00014267	-1.1115	-0.00048857	439.5459319329941	33.979	0.60654	34.731	34.247	34.853	0.75225					31	11	4	0	0	0	0.94163	1	12202	12202		6.1918	3.9391	1	7859700	+		1893	20173	1178	1194	1886	1886					-0.028168164304815946
AFIVGTNKK	9	Unmodified	_AFIVGTNKK_					0	0	0			REV__tr|U7SYR5|U7SYR5_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00888PE=3SV=1	REV__tr|U7SYR5|U7SYR5_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00888PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	489.66845703125	2	489.292559	976.570566	-0.49373	-0.00024158	-0.5547	-0.00027141	-1.0484	-0.00051299	489.2921500036875	70.049	0.71349	70.783	70.335	71.048	0.73421					22	13	2	0	0	0	0.69507	1	26610	26610		13.906	0.86358	1	4597500	+		1894	28633	1179	1195	1887	1887					0.0813435068552053
AFKEIRLHK	9	Unmodified	_AFKEIRLHK_					0	0	0		TLR4|p.Q562Tfs*9|1|0.19|ENSG00000136869|chr9:117713805-117713806|-/A|frameshift_variant;nc|ENSG00000136869|O00206-3|TLR4;nc|ENSG00000136869|O00206-2|TLR4;ENSG00000136869|ENST00000355622|TLR4	TLR4|p.Q562Tfs*9|1|0.19|ENSG00000136869|chr9:117713805-117713806|-/A|frameshift_variant	TLR4|p.Q562Tfs*9|1|0.19|ENSG00000136869|chr9:117713805-117713806|-/A|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	381.63134765625	3	381.232864	1140.67676	-0.0010176	-3.8794E-07	-0.48728	-0.00018577	-0.48829	-0.00018615	381.5677347442369	29.993	1.2505	29.993	29.607	30.857	0					41	24	2	0	0	0	0.76187	1	9611	9611		0.86438	0	1	13534000			1895	4832	1180	1196	1888	1888					0.11205106250827157
AFKISIPIRN	10	Unmodified	_AFKISIPIRN_					0	0	0		ENSG00000221890|ENST00000333039|NPTXR	ENSG00000221890|ENST00000333039|NPTXR	ENSG00000221890|ENST00000333039|NPTXR	MULTI-MSMS	A375_MHC_IP_R1	1	387.304931640625	3	386.904636	1157.69208	0.37254	0.00014414	-0.40612	-0.00015713	-0.033576	-1.2991E-05	386.90463309327646	71.153	0.51033	71.153	71.005	71.516	0					14	9	2	0	0	0	0.70972	1	25864	25864		7.9454	0.46833	1	1862000			1896	9670	1181	1197	1889	1889					0.11953973048025546
AFKTWRKTTVK	11	Unmodified	_AFKTWRKTTVK_					0	0	0		tr|U7SHE9|U7SHE9_FUSNUAldehydedehydrogenasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02287PE=3SV=1	tr|U7SHE9|U7SHE9_FUSNUAldehydedehydrogenasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02287PE=3SV=1	tr|U7SHE9|U7SHE9_FUSNUAldehydedehydrogenasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02287PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	455.1548767089844	3	455.938228	1364.79285	-0.81755	-0.00037275	-0.77204	-0.000352	-1.5896	-0.00072475	455.9379121539591	53.36	0.35771	54.111	53.944	54.301	0.75105					15	6	3	0	0	0	1.0004	1	20109	20109		2.6312	2.6312	1	1844800			1897	29424	1182	1198	1890	1890					0.1250500503085732
AFKTWRKTTVK	11	Unmodified	_AFKTWRKTTVK_					0	0	0		tr|U7SHE9|U7SHE9_FUSNUAldehydedehydrogenasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02287PE=3SV=1	tr|U7SHE9|U7SHE9_FUSNUAldehydedehydrogenasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02287PE=3SV=1	tr|U7SHE9|U7SHE9_FUSNUAldehydedehydrogenasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02287PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	455.938228	1364.79285	-0.078604	-3.5839E-05	-1.4993	-0.0006836	-1.5779	-0.00071944	456.27186373274054	54.28	0.50385	54.28	54.013	54.516	0	0.084577	-0.00028802	NaN	2.6312	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2512500			1898	29424	1182	1198							0.1250500503085732
AFLASESLI	9	Unmodified	_AFLASESLI_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-SECPEP	A375_MHC_IP_R1	1	949.8943481445312	1	950.519325	949.512048	0.40472	0.00038469	0.018778	1.7849E-05	0.4235	0.00040254	950.5189789202544	115.77	0.50803	115.77	115.53	116.04	0					18	9	3	0	0	0	0.043556	1	42490	42490		89.427	11.442	1	7881200			1899	9318	1183	1199	1891	1891					0.03527249320381998
AFLASESLI	9	Unmodified	_AFLASESLI_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MATCH	A375_MHC_IP_R2	2		1	950.519325	949.512048	0.028399	2.6994E-05	0.42363	0.00040267	0.45203	0.00042966	950.5197105083017	114.91	0.56242	115.6	115.27	115.83	0.68999	-0.083419	0.00028444	NaN	89.427	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7632700			1900	9318	1183	1199							0.03527249320381998
AFLKKLEEL	9	Unmodified	_AFLKKLEEL_					0	0	0			REV__CCDC148|p.I447F|1|0.29|ENSG00000153237|chr2:158220626-158220626|T/A|missense_variant	REV__CCDC148|p.I447F|1|0.29|ENSG00000153237|chr2:158220626-158220626|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	364.95623779296875	3	364.221742	1089.6434	0.38714	0.00014101	-0.57301	-0.0002087	-0.18587	-6.7696E-05	364.2214360798459	71.44	3.596	71.44	71.108	74.704	0					171	70	5	0	0	0	0.50892	1	26398	26398		19.362	0.98885	1	558380000	+		1901	15592	1184	1200	1892	1892					0.10216059688286805
AFLKKLEEL	9	Unmodified	_AFLKKLEEL_					0	0	0			REV__CCDC148|p.I447F|1|0.29|ENSG00000153237|chr2:158220626-158220626|T/A|missense_variant	REV__CCDC148|p.I447F|1|0.29|ENSG00000153237|chr2:158220626-158220626|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	364.6217041015625	3	364.221742	1089.6434	-0.042933	-1.5637E-05	-0.33889	-0.00012343	-0.38182	-0.00013907	364.22157366248575	70.647	3.0423	71.382	70.997	74.039	0.73421					185	59	6	0	0	0	0.50892	1	27147	27147		19.362	0.98885	1	776080000	+		1902	15592	1184	1200	1893	1893					0.10216059688286805
AFLSVLIWVAW	11	Unmodified	_AFLSVLIWVAW_					0	0	0		ENSG00000167191|ENST00000300571|GPRC5B;nc|ENSG00000167191|Q9NZH0-2|GPRC5B	ENSG00000167191|ENST00000300571|GPRC5B	ENSG00000167191|ENST00000300571|GPRC5B	MULTI-SECPEP	A375_MHC_IP_R1	1	653.2728271484375	2	652.873717	1303.73288	-0.62491	-0.00040799	-0.36305	-0.00023703	-0.98796	-0.00064501	652.8732706519911	130.93	1.8705	130.93	130.46	132.33	0					79	36	3	0	0	0	0.99921	1	50682	50682		3.2813	0.28607	1	49224000			1903	7166	1185	1201	1894	1894					0.0931631436767475
AFMEQFRTVA	10	Unmodified	_AFMEQFRTVA_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-6|OBSCN	REV__nc|ENSG00000154358|Q5VST9-6|OBSCN	MULTI-SECPEP	A375_MHC_IP_R1	1	599.686767578125	2	600.297516	1198.58048	-0.36391	-0.00021845	2.6881	0.0016137	2.3242	0.0013952	600.7991967604646	100.27	0.20292	100.27	100.18	100.38	0					5	3	2	0	0	0	0.91556	1	36870	36870		14.838	8.6325	1	822890	+		1904	27298	1186	1202	1895	1895					-0.010868293714111132
AFNKLRMAYRL	11	Unmodified	_AFNKLRMAYRL_					0	0	0			REV__nc|ENSG00000155966|P51816-7|AFF2	REV__nc|ENSG00000155966|P51816-7|AFF2	MSMS	A375_MHC_IP_R2	2	461.6653137207031	3	461.595696	1381.76526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.18	1	129.42	128.92	129.92	0.23946								0	0	0	0.16309	1	50765	50765		2.6312	0.37851	1		+		1905	19953	1187	1203	1896	1896					0.0896477849898929
AFNYMGFVAY	10	Unmodified	_AFNYMGFVAY_					0	0	0			REV__ENST00000424326.5_1_2:167262092-167297919:-|nuORF	REV__ENST00000424326.5_1_2:167262092-167297919:-|nuORF	MSMS	A375_MHC_IP_R2	2	591.66259765625	2	591.76806	1181.52157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.732	1	75.47	74.97	75.97	0.73752								0	0	0	0.15308	1	28365	28365		10.824	1.4408	1		+		1906	24624	1188	1204	1897	1897					-0.0619330566573808
AFPRLFLKT	9	Unmodified	_AFPRLFLKT_					0	0	0		nc|ENSG00000205111|Q5MAI5|CDKL4	nc|ENSG00000205111|Q5MAI5|CDKL4	nc|ENSG00000205111|Q5MAI5|CDKL4	MSMS	A375_MHC_IP_R1	1	364.9490051269531	3	364.890327	1091.64915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.643	1	19.643	19.143	20.143	0								0	0	0	0.15196	1	4925	4925		18.373	0.22675	1				1907	14865	1189	1205	1898	1898					0.10699202990599588
AFPVQEDK	8	Unmodified	_AFPVQEDK_					0	0	0			REV__TNFRSF1B|p.S424A|1|0.11|ENSG00000028137|chr1:12206904-12206904|T/G|missense_variant	REV__TNFRSF1B|p.S424A|1|0.11|ENSG00000028137|chr1:12206904-12206904|T/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	467.9770812988281	2	467.23745	932.460347	-0.59562	-0.0002783	0.37403	0.00017476	-0.22159	-0.00010353	467.2376678193889	67.412	0.71439	67.412	67.04	67.754	0					17	13	2	0	0	0	0.93416	1	24535	24535		9.3474	2.0582	1	1738500	+		1908	28138	1190	1206	1899	1899					-0.008584943735286288
AFQASLEGGLA	11	Unmodified	_AFQASLEGGLA_					0	0	0		nc|ENSG00000130714|Q9Y6A1-4|POMT1;nc|ENSG00000130714|Q9Y6A1-3|POMT1;ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1;ENST00000462375.5_1_9:134385592-134386855:+|nuORF	nc|ENSG00000130714|Q9Y6A1-4|POMT1;ENST00000462375.5_1_9:134385592-134386855:+|nuORF	nc|ENSG00000130714|Q9Y6A1-4|POMT1	MULTI-MSMS	A375_MHC_IP_R1	1	532.747314453125	2	532.274564	1062.53457	-0.63296	-0.00033691	-1.3504	-0.00071876	-1.9833	-0.0010557	532.2737989710954	60.509	0.40777	60.509	60.312	60.719	0					12	7	2	0	0	0	0.72869	1	21737	21737		10.151	0.76745	1	921510			1909	4270;12201	1191	1207	1900	1900					0.00580848718004745
AFQERLNSY	9	Unmodified	_AFQERLNSY_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	A375_MHC_IP_R1	1	564.6771240234375	2	564.277638	1126.54072	-0.76222	-0.0004301	0.30683	0.00017314	-0.45539	-0.00025697	564.2778041922248	41.596	0.61474	41.596	41.317	41.932	0					30	11	4	0	0	0	0.00025214	2	14354	14333;14354		205.91	135.2	1	24635000			1910	3161	1192	1208	1901;1902	1902					-0.017486330504880243
AFQERLNSY	9	Unmodified	_AFQERLNSY_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	A375_MHC_IP_R2	2	564.6771240234375	2	564.277638	1126.54072	-0.69974	-0.00039485	-0.07972	-4.4984E-05	-0.77946	-0.00043983	564.2775789690784	40.856	0.5601	41.631	41.386	41.946	0.77451					27	10	4	0	0	0	0.0086813	1	15138	15138		171.46	112.79	1	20047000			1911	3161	1192	1208	1903	1903					-0.017486330504880243
AFQTAHRVI	9	Unmodified	_AFQTAHRVI_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16;nc|ENSG00000221843|Q68DN1|SPATA31H1	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	A375_MHC_IP_R2	2	521.6927490234375	2	521.793258	1041.57196	-0.56424	-0.00029442	-0.4221	-0.00022025	-0.98634	-0.00051467	522.2934721742204	108.68	0.76458	109.43	108.91	109.67	0.74683					20	14	2	0	0	0	0.78348	1	41109	41109		7.9102	6.2575	1	770960			1912	9666	1193	1209	1904	1904					0.05283984774268902
AFQVKVKAF	9	Unmodified	_AFQVKVKAF_					0	0	0		ENSG00000018236|ENST00000551295|CNTN1;nc|ENSG00000018236|Q12860-2|CNTN1	ENSG00000018236|ENST00000551295|CNTN1	ENSG00000018236|ENST00000551295|CNTN1	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1686401367188	2	519.310752	1036.60695	-0.52354	-0.00027188	-1.0547	-0.00054773	-1.5783	-0.00081962	519.3095116633385	59.398	0.71126	59.398	58.99	59.701	0					23	13	3	0	0	0	0.74651	1	21218	21218		2.0598	0	1	1391200			1913	1045	1194	1210	1905	1905					0.09011227582209358
AFRDVYHLSRH	11	Unmodified	_AFRDVYHLSRH_					0	0	0		ENST00000423931.1_1_3:192873384-192874521:-|nuORF	ENST00000423931.1_1_3:192873384-192874521:-|nuORF	ENST00000423931.1_1_3:192873384-192874521:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	467.9768371582031	3	467.577582	1399.71092	-0.69399	-0.00032449	-0.7469	-0.00034923	-1.4409	-0.00067372	467.5772442029174	66.959	0.50613	67.695	67.445	67.951	0.73631					17	9	2	0	0	0	0.73239	1	25354	25354		6.6235	0.3891	1	3394600			1914	11763	1195	1211	1906	1906					0.027049026717804736
AFRTYPKGY	9	Unmodified	_AFRTYPKGY_					0	0	0		ENST00000415778.1_1_6:93801823-93802168:-|nuORF;ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF;COPS5|p.S296Ifs*14|1|0.06|ENSG00000121022|chr8:67045846-67045847|-/T|frameshift_variant;ENSG00000121022|ENST00000357849|COPS5	ENST00000415778.1_1_6:93801823-93802168:-|nuORF	ENST00000415778.1_1_6:93801823-93802168:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1846923828125	2	551.787641	1101.56073	-0.83016	-0.00045807	-2.3957	-0.0013219	-3.2259	-0.00178	551.7863726889367	82.07	0.50887	82.813	82.431	82.94	0.74293					12	9	2	0	0	0	0.58271	1	31204	31204		26.884	23.888	1	1572800			1915	640	1196	1212	1907	1907					0.014011626801448074
AFRWMFEIEDR	11	Unmodified	_AFRWMFEIEDR_					0	0	0			REV__nc|ENSG00000115841|Q96LZ7-3|RMDN2	REV__nc|ENSG00000115841|Q96LZ7-3|RMDN2	MSMS	A375_MHC_IP_R1	1	500.47515869140625	3	500.57485	1498.70272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.43	1	101.43	100.93	101.93	0								0	0	0	0.16331	1	37277	37277		0.50596	0	1		+		1916	17918	1197	1213	1908	1908					-0.02668412359867034
AFRYEARFQQK	11	Unmodified	_AFRYEARFQQK_					0	0	0		ENSG00000006071|ENST00000389817|ABCC8;nc|ENSG00000006071|Q09428-2|ABCC8	ENSG00000006071|ENST00000389817|ABCC8	ENSG00000006071|ENST00000389817|ABCC8	MULTI-SECPEP	A375_MHC_IP_R2	2	482.1562194824219	3	481.921237	1442.74188	-0.70881	-0.00034159	0.64264	0.0003097	-0.066169	-3.1888E-05	482.2561703993479	55.055	0.76455	55.805	55.473	56.237	0.75075					35	14	4	0	0	0	0.98663	1	20747	20747		12.228	3.16	1	19221000			1917	907	1198	1214	1909	1909					0.038220559860064895
AFSDPAGSANP	11	Unmodified	_AFSDPAGSANP_					0	0	0		nc|ENSG00000161911|Q86YW5-2|TREML1;nc|ENSG00000161911|Q86YW5-3|TREML1;ENSG00000161911|ENST00000426005|TREML1	nc|ENSG00000161911|Q86YW5-2|TREML1	nc|ENSG00000161911|Q86YW5-2|TREML1	MULTI-MSMS	A375_MHC_IP_R2	2	517.6325073242188	2	517.232896	1032.45124	-0.65652	-0.00033957	0.13991	7.2367E-05	-0.51661	-0.00026721	517.2328478337687	87.616	0.90962	88.348	88.016	88.925	0.7318					39	17	3	0	0	0	0.67989	1	33306	33306		17.113	2.2746	1	6294800			1918	6492	1199	1215	1910	1910					-0.06368887729877315
AFSIRAISHFA	11	Unmodified	_AFSIRAISHFA_					0	0	0			REV__THAP4|p.S522F|1|0.17|ENSG00000176946|chr2:241601945-241601945|G/A|missense_variant	REV__THAP4|p.S522F|1|0.17|ENSG00000176946|chr2:241601945-241601945|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	610.7343139648438	2	610.332747	1218.65094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.19	1	130.19	129.69	130.69	0								0	0	0	0.16232	1	50084	50084		8.1555	1.9497	1		+		1919	28102	1200	1216	1911	1911					0.050362120085537754
AFSRSKKKK	9	Unmodified	_AFSRSKKKK_					0	0	0		nc|ENSG00000089335|Q9NR11|ZNF302	nc|ENSG00000089335|Q9NR11|ZNF302	nc|ENSG00000089335|Q9NR11|ZNF302	MULTI-MSMS	A375_MHC_IP_R1	1	360.9609069824219	3	360.560981	1078.66111	0.10167	3.6656E-05	-0.29259	-0.0001055	-0.19092	-6.884E-05	360.56082611663527	28.364	0.35262	28.364	28.138	28.491	0					11	6	2	0	0	0	0.6343	1	8777	8777		12.873	3.3286	1	3549800			1920	14497	1201	1217	1912	1912					0.12492819733802207
AFSRSKKKK	9	Unmodified	_AFSRSKKKK_					0	0	0		nc|ENSG00000089335|Q9NR11|ZNF302	nc|ENSG00000089335|Q9NR11|ZNF302	nc|ENSG00000089335|Q9NR11|ZNF302	MULTI-MATCH	A375_MHC_IP_R2	2		3	360.560981	1078.66111	-0.1259	-4.5395E-05	-0.59808	-0.00021565	-0.72399	-0.00026104	360.56075926674265	27.394	0.40791	28.073	27.792	28.2	0.67857	-0.14581	-0.0002106	NaN	12.873	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2681800			1921	14497	1201	1217							0.12492819733802207
AFSSASSSSR	10	Unmodified	_AFSSASSSSR_					0	0	0			REV__ENSG00000076864|ENST00000374765|RAP1GAP	REV__ENSG00000076864|ENST00000374765|RAP1GAP	MSMS	A375_MHC_IP_R1	1	493.6507873535156	2	493.73052	985.446488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.69	1	108.69	108.19	109.19	0								0	0	0	0.14925	1	39871	39871		19.257	0	1		+		1922	16682	1202	1218	1913	1913					-0.046817718726060775
AFTDAIRMY	9	Oxidation (M)	_AFTDAIRM(Oxidation (M))Y_		AFTDAIRM(1)Y		AFTDAIRM(42)Y	0	0	1		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-MSMS	A375_MHC_IP_R1	1	552.6629638671875	2	552.263142	1102.51173	-0.42917	-0.00023702	0.17058	9.4207E-05	-0.25859	-0.00014281	552.2634696923567	62.583	0.51262	62.583	62.3	62.813	0					13	9	2	0	0	0	0.14858	1	22623	22623		41.956	21.502	1	1868300			1923	4826	1203	1219	1914	1914		255			-0.035424936711251576
AFVNWFVAF	9	Unmodified	_AFVNWFVAF_					0	0	0			REV__ENST00000450775.2_1_16:727761-728049:+|nuORF	REV__ENST00000450775.2_1_16:727761-728049:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	368.24163818359375	3	367.523644	1099.5491	0.068854	2.5306E-05	3.0978	0.0011385	3.1666	0.0011638	367.52420135344397	33.021	0.40769	33.761	33.471	33.879	0.73991					10	7	2	0	0	0	0.62767	1	11708	11708		11.495	5.7629	1	1344800	+		1924	17266	1204	1220	1915	1915					0.003309656567807906
AFVNWFVAF	9	Unmodified	_AFVNWFVAF_					0	0	0			REV__ENST00000450775.2_1_16:727761-728049:+|nuORF	REV__ENST00000450775.2_1_16:727761-728049:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	367.523644	1099.5491	0.32505	0.00011946	4.8641	0.0017877	5.1891	0.0019071	367.5258017632235	33.757	0.25016	33.757	33.597	33.848	0	-0.002107	0.00043879	NaN	11.495	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1024800	+		1925	17266	1204	1220							0.003309656567807906
AFVRFFVKI	9	Unmodified	_AFVRFFVKI_					0	0	0		DENND2A|p.E909K|1|0.3|ENSG00000146966|chr7:140522041-140522041|C/T|missense_variant	DENND2A|p.E909K|1|0.3|ENSG00000146966|chr7:140522041-140522041|C/T|missense_variant	DENND2A|p.E909K|1|0.3|ENSG00000146966|chr7:140522041-140522041|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	376.25299072265625	3	376.230572	1125.66989	0.16628	6.2559E-05	2.6853	0.0010103	2.8516	0.0010729	376.2316543825279	24.35	0.30259	24.35	24.245	24.547	0					9	5	3	0	0	0	0.80332	1	6943	6943		2.4985	1.0434	1	1197400			1926	735	1205	1221	1916	1916					0.11207793370272157
AFVRKSSILI	10	Unmodified	_AFVRKSSILI_					0	0	0		nc|ENSG00000069431|O60706|ABCC9;ENSG00000069431|ENST00000261200|ABCC9	nc|ENSG00000069431|O60706|ABCC9	nc|ENSG00000069431|O60706|ABCC9	MSMS	A375_MHC_IP_R1	1	378.6383361816406	3	378.572886	1132.69683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.038	1	97.038	96.538	97.538	0								0	0	0	0.15522	1	35656	35656		3.8763	0.80407	1				1927	1477	1206	1222	1917	1917					0.13578857190827875
AFYCDEEC	8	Unmodified	_AFYCDEEC_					0	0	0		BMP5|p.G384E|1|0.39|ENSG00000112175|chr6:55759069-55759069|C/T|missense_variant	BMP5|p.G384E|1|0.39|ENSG00000112175|chr6:55759069-55759069|C/T|missense_variant	BMP5|p.G384E|1|0.39|ENSG00000112175|chr6:55759069-55759069|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	490.20806884765625	2	490.162236	978.309919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.651	1	65.651	65.151	66.151	0								0	0	0	0.16876	1	23771	23771		2.8892	0	1				1928	238	1207	1223	1918	1918					-0.1801034541899753
AFYFFRKKYR	10	Unmodified	_AFYFFRKKYR_					0	0	0		ENSG00000113389|ENST00000265074|NPR3;nc|ENSG00000113389|P17342-2|NPR3;nc|ENSG00000113389|P17342-3|NPR3	ENSG00000113389|ENST00000265074|NPR3	ENSG00000113389|ENST00000265074|NPR3	MSMS	A375_MHC_IP_R1	1	713.6544189453125	2	713.393139	1424.77173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.54	1	143.54	143.04	144.04	0								0	0	0	0.15629	1	55065	55065		0.40072	0.050084	1				1929	3147	1208	1224	1919	1919					0.07633039722009016
AFYFFRKKYR	10	Unmodified	_AFYFFRKKYR_					0	0	0		ENSG00000113389|ENST00000265074|NPR3;nc|ENSG00000113389|P17342-2|NPR3;nc|ENSG00000113389|P17342-3|NPR3	ENSG00000113389|ENST00000265074|NPR3	ENSG00000113389|ENST00000265074|NPR3	MSMS	A375_MHC_IP_R2	2	713.6543579101562	2	713.393139	1424.77173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.56	1	143.58	143.08	144.08	0.024414								0	0	0	0.15629	1	56101	56101		0.40072	0	1				1930	3147	1208	1224	1920	1920					0.07633039722009016
AFYNTEQLL	9	Unmodified	_AFYNTEQLL_					0	0	0		ENSG00000135801|ENST00000258281|TAF5L;nc|ENSG00000135801|O75529-2|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	MULTI-MSMS	A375_MHC_IP_R1	1	549.7029418945312	2	549.776939	1097.53933	-0.17884	-9.8325E-05	-1.5304	-0.00084137	-1.7092	-0.00093969	550.2773674692589	115.81	0.86551	115.81	115.32	116.19	0					20	16	2	0	0	0	0.25276	1	42468	42468		34.102	1.797	1	1687500			1931	4714	1209	1225	1921	1921					-0.005542671392504417
AGADRLTW	8	Unmodified	_AGADRLTW_					0	0	0			REV__ENST00000369886.7_1_20:62606541-62606862:-|nuORF	REV__ENST00000369886.7_1_20:62606541-62606862:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	444.6685485839844	2	445.229959	888.445365	-0.43263	-0.00019262	-0.1853	-8.25E-05	-0.61793	-0.00027512	445.22972111506505	40.13	0.45673	40.905	40.676	41.133	0.77451					11	8	2	0	0	0	0.97021	1	14846	14846		10.824	0	1	2462500	+		1932	24022	1210	1226	1922	1922					-0.003319414508837326
AGAELVAPEAH	11	Unmodified	_AGAELVAPEAH_					0	0	0			REV__nc|ENSG00000292277|Q9UJ98-2|STAG3	REV__nc|ENSG00000292277|Q9UJ98-2|STAG3	MULTI-SECPEP	A375_MHC_IP_R1	1	532.6742553710938	2	532.772188	1063.52982	-0.89942	-0.00047918	0.80951	0.00043129	-0.089902	-4.7897E-05	532.7727844964495	66.922	1.0738	66.922	66.478	67.552	0					52	20	4	0	0	0	0.82225	1	24150	24150		12.241	0	1	14317000	+		1933	27563	1211	1227	1923	1923					0.0005996457521177945
AGAIKLER	8	Unmodified	_AGAIKLER_					0	0	0			REV__SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	REV__SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	428.6866455078125	2	429.263802	856.513051	-0.16417	-7.0472E-05	0.41721	0.00017909	0.25304	0.00010862	429.263900360194	63.058	0.35437	63.8	63.584	63.938	0.74263					11	6	2	0	0	0	0.972	1	23842	23842		8.5933	0	1	1685100	+		1934	17157	1212	1228	1924	1924					0.07905508479939272
AGAKIKDP	8	Unmodified	_AGAKIKDP_					0	0	0			REV__tr|U7SNH4|U7SNH4_FUSNUCitrate-sodiumsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01991PE=4SV=1	REV__tr|U7SNH4|U7SNH4_FUSNUCitrate-sodiumsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01991PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	399.9312744140625	2	400.237253	798.459953	-0.44079	-0.00017642	-0.056604	-2.2655E-05	-0.49739	-0.00019908	400.23715255250863	29.873	0.30324	30.572	30.385	30.688	0.69872					9	5	3	0	0	0	0.972	1	10435	10435		8.5933	4.264	1	1517600	+		1935	28326	1213	1229	1925	1925					0.0526613069727091
AGAKLLEV	8	Unmodified	_AGAKLLEV_					0	0	0			REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	MULTI-SECPEP	A375_MHC_IP_R1	1	401.1474609375	2	400.747453	799.480354	-0.3111	-0.00012467	0.70853	0.00028394	0.39743	0.00015927	400.7476789578642	43.85	0.6119	43.85	43.553	44.165	0					28	11	4	0	0	0	0.1889	1	15246	15246		74.929	0	1	13922000	+		1936	19485	1214	1230	1926	1926					0.07259301357089498
AGAKLLEV	8	Unmodified	_AGAKLLEV_					0	0	0			REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	MULTI-SECPEP	A375_MHC_IP_R2	2	401.147216796875	2	400.747453	799.480354	0.050536	2.0252E-05	0.044112	1.7678E-05	0.094648	3.793E-05	400.74740462101545	42.893	0.55606	43.666	43.421	43.977	0.7724					23	10	3	0	0	0	0.1889	1	15950	15950		74.929	0	1	11625000	+		1937	19485	1214	1230	1927	1927					0.07259301357089498
AGAPPGVC	8	Unmodified	_AGAPPGVC_					0	0	0		ENST00000550265.5_1_12:53607169-53614138:-|nuORF	ENST00000550265.5_1_12:53607169-53614138:-|nuORF	ENST00000550265.5_1_12:53607169-53614138:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	671.2853393554688	1	671.318122	670.310846	-0.69539	-0.00046683	-3.6755	-0.0024674	-4.3709	-0.0029342	671.314554444964	132.65	0.25391	132.82	132.64	132.89	0.16487					7	4	2	0	0	0	0.77781	1	52166	52166		2.8892	0	1	1415200			1938	13366	1215	1231	1928	1928					-0.03749718197138918
AGASPDPYP	9	Unmodified	_AGASPDPYP_					0	0	0			REV__CDSN|p.H476Y|1|0.46|ENSG00000204539|chr6:31116189-31116189|G/A|missense_variant	REV__CDSN|p.H476Y|1|0.46|ENSG00000204539|chr6:31116189-31116189|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	437.6610107421875	2	437.7007	873.386848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.871	1	53.622	53.122	54.122	0.75105								0	0	0	0.15283	1	19942	19942		16.942	1.0951	1		+		1939	15629	1216	1232	1929	1929					-0.0549104281600421
AGATLLIRGAA	11	Unmodified	_AGATLLIRGAA_					0	0	0			REV__ENST00000244565.7_1_6:41000663-41001646:-|nuORF	REV__ENST00000244565.7_1_6:41000663-41001646:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	507.1557922363281	2	507.308741	1012.60293	-1.1728	-0.00059496	-8.3236E-05	-4.2226E-08	-1.1729	-0.000595	507.3087034141674	26.003	0.20282	26.663	26.551	26.754	0.65992					5	3	2	0	0	0	0.90673	1	8706	8706		13.615	0	1	814890	+		1940	23105	1217	1233	1930	1930					0.0971313808852301
AGCAHSAPQ	9	Unmodified	_AGCAHSAPQ_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	A375_MHC_IP_R1	1	841.1527099609375	1	841.362112	840.354836	-0.22347	-0.00018802	1.665	0.0014009	1.4416	0.0012129	841.3687150124206	128.38	0.20325	128.38	128.23	128.43	0					5	3	2	0	0	0	0.76187	1	49229	49229		3.9444	0	1	2233300			1941	1177	1218	1234	1931	1931					-0.07172733770801187
AGCGEDSHGV	10	Unmodified	_AGCGEDSHGV_					0	0	0			REV__ENST00000377658.8_1_1:6651099-6651537:-|nuORF	REV__ENST00000377658.8_1_1:6651099-6651537:-|nuORF	MSMS	A375_MHC_IP_R1	1	466.184326171875	2	466.182349	930.350144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.719	1	52.719	52.219	53.219	0								0	0	0	0.15508	1	18764	18764		4.3292	0.38484	1		+		1942	24162	1219	1235	1932	1932					-0.11781662704197515
AGCGEDSHGV	10	Unmodified	_AGCGEDSHGV_					0	0	0			REV__ENST00000377658.8_1_1:6651099-6651537:-|nuORF	REV__ENST00000377658.8_1_1:6651099-6651537:-|nuORF	MSMS	A375_MHC_IP_R2	2	466.18353271484375	2	466.182349	930.350144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.716	1	52.468	51.968	52.968	0.75225								0	0	0	0.15417	1	19471	19471		7.2892	2.5332	1		+		1943	24162	1219	1235	1933	1933					-0.11781662704197515
AGDAVKEDVVP	11	Unmodified	_AGDAVKEDVVP_					0	0	0		nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2;HELZ2|p.D2407Afs*38|1|0.4|ENSG00000130589|chr20:63560856-63560856|T/-|frameshift_variant	nc|ENSG00000130589|Q9BYK8|HELZ2	nc|ENSG00000130589|Q9BYK8|HELZ2	MULTI-SECPEP	A375_MHC_IP_R2	2	549.6073608398438	2	550.285128	1098.5557	-0.80982	-0.00044563	0.95412	0.00052504	0.1443	7.9409E-05	550.2856108489341	30.304	0.50701	31.023	30.86	31.367	0.71857					13	9	2	0	0	0	0.88538	1	10763	10763		5.2969	0	1	1301000			1944	14599	1220	1236	1934	1934					0.01036814026861066
AGDDEEDDD	9	Unmodified	_AGDDEEDDD_					0	0	0			REV__chr2:231461273-231461540|99|26.33|0.49|5.75|-|2|None,NCL|1	REV__chr2:231461273-231461540|99|26.33|0.49|5.75|-|2|None,NCL|1	MSMS	A375_MHC_IP_R1	1	490.6658935546875	2	490.651798	979.289044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.935	1	80.935	80.435	81.435	0								0	0	0	0.15486	1	29572	29572		4.756	2.4533	1		+		1945	15736	1221	1237	1935	1935					-0.2014294099332119
AGDFRSGDEEF	11	Unmodified	_AGDFRSGDEEF_					0	0	0		ENSG00000105127|ENST00000269701|AKAP8;ENST00000537303.5_1_19:15472501-15484105:-|nuORF	ENSG00000105127|ENST00000269701|AKAP8	ENSG00000105127|ENST00000269701|AKAP8	MULTI-MSMS	A375_MHC_IP_R2	2	615.6570434570312	2	615.257099	1228.49965	-0.63867	-0.00039295	0.097015	5.9689E-05	-0.54166	-0.00033326	615.2571289648772	70.693	0.30276	71.427	71.302	71.605	0.73421					10	5	3	0	0	0	0.69231	1	26836	26836		16.149	3.9084	1	3626000			1946	2567	1222	1238	1936	1936					-0.1054643888062401
AGDPTLLAAV	10	Unmodified	_AGDPTLLAAV_					0	0	0		ENST00000339276.5_1_1:27190446-27190644:+|nuORF	ENST00000339276.5_1_1:27190446-27190644:+|nuORF	ENST00000339276.5_1_1:27190446-27190644:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	464.6328430175781	2	464.260925	926.507297	-0.052745	-2.4487E-05	-0.11322	-5.2566E-05	-0.16597	-7.7053E-05	464.2610130404936	43.314	0.55939	43.314	42.891	43.451	0					16	10	2	0	0	0	0.91556	1	14976	14976		14.838	11.557	1	1537600			1947	10843	1223	1239	1937	1937					0.04110365177598396
AGDRLVEV	8	Unmodified	_AGDRLVEV_					0	0	0		nc|ENSG00000065054|Q15599-2|NHERF2;ENSG00000065054|ENST00000424542|NHERF2;ENSG00000109062|ENST00000262613|NHERF1	nc|ENSG00000065054|Q15599-2|NHERF2	nc|ENSG00000065054|Q15599-2|NHERF2	MULTI-SECPEP	A375_MHC_IP_R1	1	430.1375427246094	2	429.737617	857.460681	-0.02192	-9.4199E-06	-0.017271	-7.4218E-06	-0.039191	-1.6842E-05	429.7375965110536	40.537	0.75903	40.537	40.254	41.013	0					35	14	4	0	0	0	0.10166	1	13900	13900		92.653	18.231	1	43920000			1948	1367	1224	1240	1938	1938					0.02624925346344753
AGDRLVEV	8	Unmodified	_AGDRLVEV_					0	0	0		nc|ENSG00000065054|Q15599-2|NHERF2;ENSG00000065054|ENST00000424542|NHERF2;ENSG00000109062|ENST00000262613|NHERF1	nc|ENSG00000065054|Q15599-2|NHERF2	nc|ENSG00000065054|Q15599-2|NHERF2	MULTI-SECPEP	A375_MHC_IP_R2	2	430.13763427734375	2	429.737617	857.460681	-0.25125	-0.00010797	-0.035386	-1.5207E-05	-0.28664	-0.00012318	429.7375593956168	39.673	1.0152	40.448	40.067	41.082	0.77451					45	19	4	0	0	0	0.11213	1	14626	14626		92.653	18.231	1	42701000			1949	1367	1224	1240	1939	1939					0.02624925346344753
AGDRQLECRFL	11	Unmodified	_AGDRQLECRFL_					0	0	0		ENST00000473019.5_1_11:6518539-6524157:+|nuORF	ENST00000473019.5_1_11:6518539-6524157:+|nuORF	ENST00000473019.5_1_11:6518539-6524157:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	436.6174011230469	3	436.555678	1306.6452	-0.22678	-9.9004E-05	0.81607	0.00035626	0.58929	0.00025726	436.8900932389414	40.988	0.45353	40.988	40.66	41.114	0					12	8	2	0	0	0	0.72728	1	14141	14141		6.2344	1.0359	1	1349500			1950	12381	1225	1241	1940	1940					0.004147454345684309
AGEAEALASMP	11	Unmodified	_AGEAEALASMP_					0	0	0		ENSG00000204291|ENST00000375001|COL15A1	ENSG00000204291|ENST00000375001|COL15A1	ENSG00000204291|ENST00000375001|COL15A1	MSMS	A375_MHC_IP_R2	2	523.6685791015625	2	523.744782	1045.47501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.119	1	47.88	47.38	48.38	0.76128								0	0	0	0.14647	1	17661	17661		22.736	2.3217	1				1951	9424	1226	1242	1941	1941					-0.045907902876933804
AGEAFMPESLV	11	Unmodified	_AGEAFMPESLV_					0	0	0			REV__ENST00000477047.6_1_5:94991719-94994596:-|nuORF	REV__ENST00000477047.6_1_5:94991719-94994596:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	576.2652587890625	2	575.776082	1149.53761	0.058111	3.3459E-05	-0.47339	-0.00027257	-0.41528	-0.00023911	575.7759490975446	99.868	0.76129	100.63	100.37	101.13	0.76278					29	14	3	0	0	0	0.66658	1	37808	37808		18.146	3.3081	1	2919000	+		1952	25193	1227	1243	1942	1942					-0.03117644219491922
AGECSCDEEM	10	Unmodified	_AGECSCDEEM_					0	0	0			REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	MSMS	A375_MHC_IP_R1	1	537.203125	2	537.16465	1072.31475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.378	1	62.378	61.878	62.878	0								0	0	0	0.1552	1	22529	22529		3.9444	2.2918	1		+		1953	20176	1228	1244	1943	1943					-0.21851829338561402
AGECSCDEEM	10	Unmodified	_AGECSCDEEM_					0	0	0			REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	MSMS	A375_MHC_IP_R2	2	537.2030639648438	2	537.16465	1072.31475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.402	1	62.147	61.647	62.647	0.74503								0	0	0	0.1552	1	23272	23272		3.9444	3.1508	1		+		1954	20176	1228	1244	1944	1944					-0.21851829338561402
AGEIEHDEF	9	Unmodified	_AGEIEHDEF_					0	0	0			REV__ENSG00000251322|ENST00000262795|SHANK3	REV__ENSG00000251322|ENST00000262795|SHANK3	MSMS	A375_MHC_IP_R2	2	523.6793823242188	2	523.724904	1045.43525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.845	1	55.596	55.096	56.096	0.75075								0	0	0	0.15486	1	20706	20706		13.508	1.8676	1		+		1955	22846	1229	1245	1945	1945					-0.08564593966752909
AGENESYEE	9	Unmodified	_AGENESYEE_					0	0	0		ENST00000413069.5_1_2:70312962-70313612:-|nuORF	ENST00000413069.5_1_2:70312962-70313612:-|nuORF	ENST00000413069.5_1_2:70312962-70313612:-|nuORF	MSMS	A375_MHC_IP_R1	1	514.1845092773438	2	514.196176	1026.3778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.38	1	101.38	100.88	101.88	0								0	0	0	0.15486	1	37261	37261		8.5933	0	1				1956	11652	1230	1246	1946	1946					-0.13433480962976319
AGENQAPKEGP	11	Unmodified	_AGENQAPKEGP_					0	0	0			REV__NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant	REV__NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	549.1483154296875	2	549.264727	1096.5149	-1.2561	-0.00068995	2.139	0.0011749	0.88291	0.00048495	549.265882264933	52.711	0.55534	53.462	53.133	53.688	0.75105					13	10	2	0	0	0	0.75408	1	19779	19779		21.537	0	1	1279900	+		1957	21616	1231	1247	1947	1947					-0.029495272927533733
AGEPRLGPE	9	Unmodified	_AGEPRLGPE_					0	0	0		ENST00000464954.1_1_1:167691199-167735064:+|nuORF	ENST00000464954.1_1_1:167691199-167735064:+|nuORF	ENST00000464954.1_1_1:167691199-167735064:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	463.6401062011719	2	463.240524	924.466495	-0.18275	-8.4659E-05	-0.93677	-0.00043395	-1.1195	-0.00051861	463.2401064986933	72.888	0.81171	72.888	72.625	73.437	0					23	15	2	0	0	0	0.64808	2	26566	26566;26595		11.64	3.7301	1	1349900			1958	12233	1232	1248	1948;1949	1948					0.0012402385799532567
AGFAGDDAPR	10	Unmodified	_AGFAGDDAPR_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000482085.1_1_10:90708534-90712518:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;POTEF|p.A729V|1|0.17|ENSG00000196604|chr2:130075286-130075286|G/A|missense_variant;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-SECPEP	A375_MHC_IP_R1	1	488.6498718261719	2	488.727781	975.441008	-0.39344	-0.00019229	-0.41276	-0.00020173	-0.80621	-0.00039401	488.72754778916834	25.588	0.40641	25.588	25.46	25.866	0					11	7	2	0	0	0	0.75968	1	7476	7476		24.882	9.6331	1	3795600			1959	1615;5418;9064	1233	1249	1950	1950					-0.04769450664434771
AGFAGDDAPR	10	Unmodified	_AGFAGDDAPR_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000482085.1_1_10:90708534-90712518:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;POTEF|p.A729V|1|0.17|ENSG00000196604|chr2:130075286-130075286|G/A|missense_variant;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-SECPEP	A375_MHC_IP_R2	2	488.6497802734375	2	488.727781	975.441008	-0.99613	-0.00048684	0.12977	6.3422E-05	-0.86636	-0.00042341	488.7278104887312	25.06	0.40853	25.704	25.568	25.976	0.64368					11	7	2	0	0	0	0.71464	1	8335	8335		21.59	4.6479	1	3199800			1960	1615;5418;9064	1233	1249	1951	1951					-0.04769450664434771
AGFGKKKIKR	10	Unmodified	_AGFGKKKIKR_					0	0	0			REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	A375_MHC_IP_R2	2	378.27880859375	3	378.248625	1131.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.899	1	72.633	72.133	73.133	0.73421								0	0	0	0.1562	1	27283	27283		0.69767	0.19171	1		+		1961	17937	1234	1250	1952	1952					0.1634538552182221
AGFGLSWID	9	Unmodified	_AGFGLSWID_					0	0	0		ENST00000304191.3_1_15:83655008-83656109:+|nuORF	ENST00000304191.3_1_15:83655008-83656109:+|nuORF	ENST00000304191.3_1_15:83655008-83656109:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	967.5460815429688	1	965.472709	964.465432	-0.069537	-6.7136E-05	0.33242	0.00032095	0.26289	0.00025381	965.4727865590953	105.58	0.76398	106.34	105.97	106.73	0.75977					31	14	3	0	0	0	0.5339	1	39931	39931		18.135	1.1927	1	10390000			1962	10561	1235	1251	1953	1953					-0.0182219051090442
AGFGLSWID	9	Unmodified	_AGFGLSWID_					0	0	0		ENST00000304191.3_1_15:83655008-83656109:+|nuORF	ENST00000304191.3_1_15:83655008-83656109:+|nuORF	ENST00000304191.3_1_15:83655008-83656109:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	965.472709	964.465432	0.27942	0.00026977	-0.028147	-2.7175E-05	0.25128	0.0002426	965.4725102022163	106.53	0.76847	106.53	106.11	106.88	0	0.090824	-0.00022157	NaN	18.135	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11068000			1963	10561	1235	1251							-0.0182219051090442
AGFKDIRSY	9	Unmodified	_AGFKDIRSY_					0	0	0		ENSG00000120053|ENST00000370508|GOT1;nc|ENSG00000120053|P17174-2|GOT1;GOT1|p.R160C|1|0.31|ENSG00000120053|chr10:99406196-99406196|G/A|missense_variant	ENSG00000120053|ENST00000370508|GOT1	ENSG00000120053|ENST00000370508|GOT1	MULTI-SECPEP	A375_MHC_IP_R1	1	353.2537536621094	3	352.853941	1055.53999	-0.14527	-5.1259E-05	-0.11796	-4.1623E-05	-0.26323	-9.2881E-05	352.8538897345568	34.482	0.50606	34.482	34.253	34.759	0					22	9	3	0	0	0	0.14554	1	11374	11374		46.475	29.033	1	8811000			1964	3645	1236	1252	1954	1954					0.01444572300465552
AGFKDIRSY	9	Unmodified	_AGFKDIRSY_					0	0	0		ENSG00000120053|ENST00000370508|GOT1;nc|ENSG00000120053|P17174-2|GOT1;GOT1|p.R160C|1|0.31|ENSG00000120053|chr10:99406196-99406196|G/A|missense_variant	ENSG00000120053|ENST00000370508|GOT1	ENSG00000120053|ENST00000370508|GOT1	MULTI-MSMS	A375_MHC_IP_R2	2	353.2538146972656	3	352.853941	1055.53999	-0.76694	-0.00027062	0.50322	0.00017756	-0.26372	-9.3053E-05	352.8540665001352	33.723	0.50597	34.475	34.247	34.753	0.75225					24	9	3	0	0	0	0.030891	1	12110	12110		60.899	40.485	1	10143000			1965	3645	1236	1252	1955	1955					0.01444572300465552
AGFLIRNI	8	Unmodified	_AGFLIRNI_					0	0	0		nc|ENSG00000164038|Q86UD5-2|SLC9B2;ENSG00000164038|ENST00000394785|SLC9B2;ENST00000515424.5_1_4:103970048-103988653:-|nuORF	nc|ENSG00000164038|Q86UD5-2|SLC9B2	nc|ENSG00000164038|Q86UD5-2|SLC9B2	MULTI-MSMS	A375_MHC_IP_R1	1	452.6742858886719	2	452.27417	902.533787	0.33393	0.00015103	-0.34474	-0.00015592	-0.010811	-4.8897E-06	452.2739666615152	69.554	0.50598	69.554	69.326	69.832	0					19	9	3	0	0	0	0.078619	1	25249	25249		98.807	4.9238	1	4492500			1966	6761	1237	1253	1956	1956					0.07862098859607158
AGFLIRNI	8	Unmodified	_AGFLIRNI_					0	0	0		nc|ENSG00000164038|Q86UD5-2|SLC9B2;ENSG00000164038|ENST00000394785|SLC9B2;ENST00000515424.5_1_4:103970048-103988653:-|nuORF	nc|ENSG00000164038|Q86UD5-2|SLC9B2	nc|ENSG00000164038|Q86UD5-2|SLC9B2	MULTI-MSMS	A375_MHC_IP_R2	2	452.6741638183594	2	452.27417	902.533787	-0.14834	-6.7091E-05	-0.06332	-2.8638E-05	-0.21166	-9.5728E-05	452.2741134223144	68.519	0.76001	69.254	68.968	69.728	0.73511					27	14	3	0	0	0	0.078619	1	25977	25977		98.807	4.9238	1	3692400			1967	6761	1237	1253	1957	1957					0.07862098859607158
AGFSGNSCITY	11	Unmodified	_AGFSGNSCITY_					0	0	0		PIP5K1A|p.S475F|1|0.37|ENSG00000143398|chr1:151242183-151242183|C/T|missense_variant	PIP5K1A|p.S475F|1|0.37|ENSG00000143398|chr1:151242183-151242183|C/T|missense_variant	PIP5K1A|p.S475F|1|0.37|ENSG00000143398|chr1:151242183-151242183|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	559.6542358398438	2	560.242406	1118.47026	-0.23335	-0.00013073	0.42685	0.00023914	0.1935	0.00010841	560.2424308463295	111.97	0.61053	111.97	111.67	112.28	0					16	11	2	0	0	0	0.94168	1	41046	41046		20.415	9.5906	1	1086100			1968	15180	1238	1254	1958	1958					-0.08423674430446226
AGFSGNSCITY	11	Unmodified	_AGFSGNSCITY_					0	0	0		PIP5K1A|p.S475F|1|0.37|ENSG00000143398|chr1:151242183-151242183|C/T|missense_variant	PIP5K1A|p.S475F|1|0.37|ENSG00000143398|chr1:151242183-151242183|C/T|missense_variant	PIP5K1A|p.S475F|1|0.37|ENSG00000143398|chr1:151242183-151242183|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	559.6544799804688	2	560.242406	1118.47026	-0.46485	-0.00026043	1.5456	0.0008659	1.0807	0.00060547	560.2432379385749	111.49	0.46413	112.22	111.96	112.42	0.73691					13	8	2	0	0	0	0.98524	1	42009	42009		15.248	2.7169	1	2110700			1969	15180	1238	1254	1959	1959					-0.08423674430446226
AGFTASPF	8	Unmodified	_AGFTASPF_					0	0	0		ENSG00000079335|ENST00000336454|CDC14A;nc|ENSG00000079335|Q9UNH5-5|CDC14A;nc|ENSG00000079335|Q9UNH5-2|CDC14A	ENSG00000079335|ENST00000336454|CDC14A	ENSG00000079335|ENST00000336454|CDC14A	MULTI-MSMS	A375_MHC_IP_R1	1	399.1611022949219	2	399.195054	796.375555	-0.4035	-0.00016108	0.3942	0.00015736	-0.0092992	-3.7122E-06	399.19514963397563	28.966	0.81154	28.966	28.541	29.353	0					23	15	2	0	0	0	0.77686	1	8841	8841		6.3541	0	1	1978500			1970	1694	1239	1255	1960	1960					-0.030778201194721078
AGFTKAAL	8	Unmodified	_AGFTKAAL_					0	0	0		nc|ENSG00000032742|Q13099-3|IFT88;ENSG00000032742|ENST00000351808|IFT88;nc|ENSG00000032742|Q13099-1|IFT88	nc|ENSG00000032742|Q13099-3|IFT88	nc|ENSG00000032742|Q13099-3|IFT88	MULTI-SECPEP	A375_MHC_IP_R1	1	390.12652587890625	2	389.726521	777.438489	-0.12578	-4.902E-05	0.32476	0.00012657	0.19898	7.7547E-05	389.7265533957509	41.265	0.60786	41.265	40.963	41.571	0					18	11	2	0	0	0	0.64713	1	14245	14245		43.858	11.553	1	2131900			1971	1118	1240	1256	1961	1961					0.04086745668553249
AGFTKAAL	8	Unmodified	_AGFTKAAL_					0	0	0		nc|ENSG00000032742|Q13099-3|IFT88;ENSG00000032742|ENST00000351808|IFT88;nc|ENSG00000032742|Q13099-1|IFT88	nc|ENSG00000032742|Q13099-3|IFT88	nc|ENSG00000032742|Q13099-3|IFT88	MULTI-SECPEP	A375_MHC_IP_R2	2	390.1266174316406	2	389.726521	777.438489	-0.23368	-9.1071E-05	0.25974	0.00010123	0.026058	1.0156E-05	389.72657134306405	40.396	0.60954	41.17	40.828	41.438	0.77451					20	11	2	0	0	0	0.85715	1	14899	14899		36.127	7.9538	1	3299900			1972	1118	1240	1256	1962	1962					0.04086745668553249
AGGAAQLALDK	11	Unmodified	_AGGAAQLALDK_					0	0	0		ENSG00000072778|ENST00000356839|ACADVL;nc|ENSG00000072778|P49748-3|ACADVL;ACADVL|p.I373Nfs*22|1|0.49|ENSG00000072778|chr17:7223168-7223169|-/A|frameshift_variant;ENST00000581562.5_1_17:7123303-7125294:+|nuORF;ENST00000577191.5_1_17:7123303-7125473:+|nuORF;ENST00000582056.5_1_17:7123303-7124179:+|nuORF	ENSG00000072778|ENST00000356839|ACADVL	ENSG00000072778|ENST00000356839|ACADVL	MULTI-SECPEP	A375_MHC_IP_R1	1	508.1822204589844	2	507.782556	1013.55056	-0.41382	-0.00021013	-0.43036	-0.00021853	-0.84418	-0.00042866	507.782379549619	34.077	0.40453	34.077	33.898	34.303	0					11	7	2	0	0	0	0.28775	1	11234	11234		48.561	15.116	1	2605800			1973	1546	1241	1257	1963	1963					0.044325549548943854
AGGAAQLALDK	11	Unmodified	_AGGAAQLALDK_					0	0	0		ENSG00000072778|ENST00000356839|ACADVL;nc|ENSG00000072778|P49748-3|ACADVL;ACADVL|p.I373Nfs*22|1|0.49|ENSG00000072778|chr17:7223168-7223169|-/A|frameshift_variant;ENST00000581562.5_1_17:7123303-7125294:+|nuORF;ENST00000577191.5_1_17:7123303-7125473:+|nuORF;ENST00000582056.5_1_17:7123303-7124179:+|nuORF	ENSG00000072778|ENST00000356839|ACADVL	ENSG00000072778|ENST00000356839|ACADVL	MULTI-MATCH	A375_MHC_IP_R2	2		2	507.782556	1013.55056	-1.0677	-0.00054215	0.025353	1.2874E-05	-1.0423	-0.00052928	507.7825796167749	33.317	0.35612	34.069	33.942	34.298	0.75225	-0.003934	0.00023684	NaN	48.561	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2996600			1974	1546	1241	1257							0.044325549548943854
AGGAFLPG	8	Unmodified	_AGGAFLPG_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MULTI-SECPEP	A375_MHC_IP_R2	2	688.8052978515625	1	689.361702	688.354425	-0.67121	-0.00046271	1.4497	0.00099934	0.77845	0.00053663	689.3623236762704	62.766	0.50565	63.509	63.23	63.736	0.74263					13	9	2	0	0	0	0.972	1	23786	23786		0.79363	0	1	2315500	+		1975	22397	1242	1258	1964	1964					-0.0022178542832307357
AGGDCESDEGP	11	Unmodified	_AGGDCESDEGP_					0	0	0			REV__ENST00000589258.1_1_18:33077719-33077869:-|nuORF	REV__ENST00000589258.1_1_18:33077719-33077869:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	519.6901245117188	2	518.679836	1035.34512	-0.55091	-0.00028574	1.8476	0.00095831	1.2967	0.00067256	518.6813247768252	31.936	0.5635	31.936	31.667	32.231	0					26	10	3	0	0	0	0.73378	1	10316	10316		5.2969	1.7004	1	11073000	+		1976	26421	1243	1259	1965	1965					-0.1711401135748929
AGGGCAAA	8	Unmodified	_AGGGCAAA_					0	0	0			REV__ENSG00000130449|ENST00000252744|ZSWIM6	REV__ENSG00000130449|ENST00000252744|ZSWIM6	MULTI-SECPEP	A375_MHC_IP_R2	2	577.1265869140625	1	577.239872	576.232595	-0.45662	-0.00026358	-0.63066	-0.00036404	-1.0873	-0.00062762	577.243494050039	61.882	0.25212	62.624	62.421	62.673	0.74263					5	4	2	0	0	0	0.972	1	23402	23402		0	0	1	426500	+		1977	18540	1244	1260	1966	1966					-0.07247150782370682
AGGGLFRQV	9	Unmodified	_AGGGLFRQV_					0	0	0			REV__ENST00000371626.8_1_1:52520892-52521162:-|nuORF	REV__ENST00000371626.8_1_1:52520892-52521162:-|nuORF	MSMS	A375_MHC_IP_R1	1	452.6740417480469	2	452.753601	903.49265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.61	1	69.61	69.11	70.11	0								0	0	0	0.14905	1	25263	25263		23.148	2.6948	1		+		1978	24045	1245	1261	1967	1967					0.03704337820136061
AGGGNRRTANV	11	Unmodified	_AGGGNRRTANV_					0	0	0		nc|ENSG00000170289|Q9NQW8-2|CNGB3;ENSG00000170289|ENST00000320005|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	MSMS	A375_MHC_IP_R2	2	536.7109375	2	536.783953	1071.55335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.546	1	26.201	25.701	26.701	0.65556								0	0	0	0.14647	1	8549	8549		22.736	5.6234	1				1979	7489	1246	1262	1968	1968					0.020438231324078515
AGGPENSWNP	10	Unmodified	_AGGPENSWNP_					0	0	0		ENST00000392657.7_1_11:128893918-128894020:-|nuORF	ENST00000392657.7_1_11:128893918-128894020:-|nuORF	ENST00000392657.7_1_11:128893918-128894020:-|nuORF	MSMS	A375_MHC_IP_R1	1	514.6869506835938	2	514.725238	1027.43592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.609	1	28.609	28.109	29.109	0								0	0	0	0.15105	1	8850	8850		15.847	3.3156	1				1980	11425	1247	1263	1969	1969					-0.0766975452704628
AGGPSDDD	8	Unmodified	_AGGPSDDD_					0	0	0		ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MSMS	A375_MHC_IP_R1	1	367.0924072265625	2	367.13539	732.256227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.582	1	31.582	31.082	32.082	0								0	0	0	0.16876	1	10122	10122		5.2307	0	1				1981	1208	1248	1264	1970	1970					-0.12061058534857239
AGGQLLYQLL	10	Unmodified	_AGGQLLYQLL_					0	0	0			REV__ENSG00000128564|ENST00000249330|VGF	REV__ENSG00000128564|ENST00000249330|VGF	MULTI-SECPEP	A375_MHC_IP_R1	1	538.71044921875	2	538.310949	1074.60735	-0.69705	-0.00037523	0.084322	4.5391E-05	-0.61273	-0.00032984	538.3110110271919	75.811	0.50275	75.811	75.564	76.067	0					14	9	2	0	0	0	0.32951	1	27633	27633		54.774	12.934	1	2292100	+		1982	18452	1249	1265	1971	1971					0.0730260251141317
AGGQLLYQLL	10	Unmodified	_AGGQLLYQLL_					0	0	0			REV__ENSG00000128564|ENST00000249330|VGF	REV__ENSG00000128564|ENST00000249330|VGF	MULTI-SECPEP	A375_MHC_IP_R2	2	538.181884765625	2	538.310949	1074.60735	-0.92583	-0.00049839	0.209	0.00011251	-0.71684	-0.00038588	538.3111575508474	74.925	0.40495	75.662	75.467	75.872	0.73752					12	7	2	0	0	0	0.24499	1	28435	28435		43.858	0	1	2093700	+		1983	18452	1249	1265	1972	1972					0.0730260251141317
AGGSEATFSF	10	Unmodified	_AGGSEATFSF_					0	0	0			REV__nc|ENSG00000120318|Q8WWN8-2|ARAP3	REV__nc|ENSG00000120318|Q8WWN8-2|ARAP3	MULTI-SECPEP	A375_MHC_IP_R1	1	486.6272277832031	2	487.216714	972.418876	-0.3107	-0.00015138	0.52168	0.00025417	0.21098	0.00010279	487.216830538097	58.252	0.50756	58.252	58.075	58.582	0					11	9	2	0	0	0	0.89109	1	20915	20915		7.2892	0	1	1010700	+		1984	18121	1250	1266	1973	1973					-0.06843675132847693
AGGSQRRVAVC	11	Unmodified	_AGGSQRRVAVC_					0	0	0		ADAMTS9|p.V1353A|1|0.38|ENSG00000163638|chr3:64596951-64596951|A/G|missense_variant	ADAMTS9|p.V1353A|1|0.38|ENSG00000163638|chr3:64596951-64596951|A/G|missense_variant	ADAMTS9|p.V1353A|1|0.38|ENSG00000163638|chr3:64596951-64596951|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	551.6273803710938	2	552.290556	1102.56656	-0.93728	-0.00051765	0.44606	0.00024636	-0.49122	-0.0002713	552.2907567729385	30.143	0.15283	30.861	30.759	30.911	0.71857					4	2	2	0	0	0	0.99109	1	10591	10591		6.2058	3.2105	1	611840			1985	55	1251	1267	1974	1974					0.01937937920160948
AGGWALPS	8	Unmodified	_AGGWALPS_					0	0	0		ENST00000587213.5_1_19:56159450-56160182:+|nuORF;ENST00000593069.1_2_19:56159450-56160373:+|nuORF	ENST00000587213.5_1_19:56159450-56160182:+|nuORF	ENST00000587213.5_1_19:56159450-56160182:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	379.580322265625	2	379.695221	757.375889	0.50709	0.00019254	0.95318	0.00036192	1.4603	0.00055445	379.69547214655506	106.38	0.36028	106.38	106.06	106.42	0					11	6	2	0	0	0	0.972	1	39059	39059		5.7604	0.52976	1	984380			1986	13742	1252	1268	1975	1975					-0.012504003996241408
AGHGPCCS	8	Unmodified	_AGHGPCCS_					0	0	0			REV__ENST00000483015.1_1_1:1563968-1564546:+|nuORF	REV__ENST00000483015.1_1_1:1563968-1564546:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	732.366455078125	1	731.259955	730.252679	-0.51201	-0.00037441	3.4698	0.0025374	2.9578	0.002163	731.2646542620869	104.5	0.25351	104.5	104.34	104.59	0					6	4	2	0	0	0	0.77839	1	38355	38355		0.79363	0	1	1001500	+		1987	25287	1253	1269	1976	1976					-0.1232372311404788
AGHGSSGG	8	Unmodified	_AGHGSSGG_					0	0	0		ENSG00000133710|ENST00000256084|SPINK5;nc|ENSG00000133710|Q9NQ38-3|SPINK5;nc|ENSG00000133710|Q9NQ38-2|SPINK5	ENSG00000133710|ENST00000256084|SPINK5	ENSG00000133710|ENST00000256084|SPINK5	MULTI-SECPEP	A375_MHC_IP_R1	1	629.7139282226562	1	629.263779	628.256502	-0.94242	-0.00059303	0.98536	0.00062005	0.042939	2.702E-05	629.2684295824972	138.34	2.2383	138.34	137.18	139.42	0					65	43	2	0	0	0	0.972	1	53131	53131		2.5775	0.27475	1	1326900			1988	4526	1254	1270	1977	1977					-0.07249594024324324
AGHLPGLAF	9	Unmodified	_AGHLPGLAF_					0	0	0		ENST00000477081.1_1_17:59482609-59483362:+|nuORF;ENSG00000121068|ENST00000240328|TBX2	ENST00000477081.1_1_17:59482609-59483362:+|nuORF	ENST00000477081.1_1_17:59482609-59483362:+|nuORF	MSMS	A375_MHC_IP_R2	2	441.6578063964844	2	441.745245	881.475937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.026	1	72.761	72.261	73.261	0.73421								0	0	0	0.14459	1	27331	27331		28.173	1.9051	1				1989	3707	1255	1271	1978	1978					0.030458369341772595
AGIEKDAVT	9	Unmodified	_AGIEKDAVT_					0	0	0		nc|ENSG00000100578|Q9BVV6-2|KIAA0586;nc|ENSG00000100578|Q9BVV6-4|KIAA0586;nc|ENSG00000100578|Q9BVV6|KIAA0586;ENSG00000100578|ENST00000652326|KIAA0586;ENST00000538571.6_1_14:58909433-59003756:+|nuORF;nc|ENSG00000100578|Q9BVV6-3|KIAA0586	nc|ENSG00000100578|Q9BVV6-2|KIAA0586	nc|ENSG00000100578|Q9BVV6-2|KIAA0586	MULTI-SECPEP	A375_MHC_IP_R2	2	451.6585998535156	2	452.242732	902.470912	-0.15197	-6.8728E-05	-0.46054	-0.00020828	-0.61251	-0.000277	452.2424576372433	68.904	0.45728	69.639	69.373	69.83	0.73512					14	8	3	0	0	0	0.74651	1	26082	26082		8.5933	0	1	2016800			1990	2195	1256	1272	1979	1979					0.015774882808955226
AGIENAEIYNY	11	Unmodified	_AGIENAEIYNY_					0	0	0		ENSG00000092445|ENST00000263798|TYRO3	ENSG00000092445|ENST00000263798|TYRO3	ENSG00000092445|ENST00000263798|TYRO3	MULTI-MSMS	A375_MHC_IP_R2	2	628.7850341796875	2	628.793318	1255.57208	-0.79336	-0.00049886	0.070263	4.4181E-05	-0.7231	-0.00045468	628.7930057576959	67.546	0.7115	68.282	67.9	68.612	0.73631					34	13	3	0	0	0	0.67989	1	25680	25680		17.113	3.2068	1	13645000			1991	2006	1257	1273	1980	1980					-0.045481048070541874
AGIEWIRNHQL	11	Unmodified	_AGIEWIRNHQL_					0	0	0			REV__ENST00000487787.5_1_1:202275897-202288332:+|nuORF	REV__ENST00000487787.5_1_1:202275897-202288332:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	669.7182006835938	2	668.85966	1335.70477	-0.5621	-0.00037596	1.7336	0.0011595	1.1715	0.00078355	668.8609191134892	103.69	0.35701	103.69	103.47	103.83	0					10	6	2	0	0	0	0.73195	1	38025	38025		8.7454	2.0222	1	1696300	+		1992	18704	1258	1274	1981	1981					0.0503438444029598
AGIIFKVLV	9	Unmodified	_AGIIFKVLV_					0	0	0			REV__ENSG00000162885|ENST00000366600|B3GALNT2	REV__ENSG00000162885|ENST00000366600|B3GALNT2	MULTI-SECPEP	A375_MHC_IP_R1	1	479.67755126953125	2	480.318046	958.621539	-0.23573	-0.00011323	0.10267	4.9312E-05	-0.13307	-6.3915E-05	480.3180708054927	117.65	0.45749	117.65	117.36	117.82	0					14	8	2	0	0	0	0.69504	1	43187	43187		4.3292	0	1	6774100	+		1993	20317	1259	1275	1982	1982					0.14057299730370687
AGIKAVTIH	9	Unmodified	_AGIKAVTIH_					0	0	0		ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-3|UBA6;nc|ENSG00000033178|A0AVT1-4|UBA6;ENST00000429659.7_1_4:68529542-68566852:-|nuORF;ENST00000506571.1_1_4:68544155-68566852:-|nuORF	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	MULTI-SECPEP	A375_MHC_IP_R2	2	455.67926025390625	2	455.279452	908.544351	-0.1631	-7.4255E-05	-0.098367	-4.4784E-05	-0.26146	-0.00011904	455.2793663764452	27.242	0.81232	27.921	27.69	28.502	0.67857					43	15	4	0	0	0	0.43707	1	9264	9264		36.044	11.37	1	76577000			1994	1123	1260	1276	1983	1983					0.08642081514040001
AGITGLHPPG	10	Unmodified	_AGITGLHPPG_					0	0	0		nc|ENSG00000144320|Q9C0E8-4|LNPK	nc|ENSG00000144320|Q9C0E8-4|LNPK	nc|ENSG00000144320|Q9C0E8-4|LNPK	MULTI-SECPEP	A375_MHC_IP_R1	1	459.461181640625	2	460.253434	918.492316	0.033337	1.5344E-05	-4.3203	-0.0019884	-4.287	-0.0019731	460.25244007794856	22.866	0.25075	22.866	22.673	22.924	0					5	4	2	0	0	0	0.94311	1	6167	6167		0.45834	0	1	499430			1995	14658	1261	1277	1984	1984					0.029809181002860896
AGKHQDLKY	9	Unmodified	_AGKHQDLKY_					0	0	0		nc|ENSG00000164045|P30304-2|CDC25A;ENSG00000164045|ENST00000302506|CDC25A	nc|ENSG00000164045|P30304-2|CDC25A	nc|ENSG00000164045|P30304-2|CDC25A	MULTI-MSMS	A375_MHC_IP_R2	2	530.9521484375	2	530.282723	1058.55089	-0.88262	-0.00046804	0.04849	2.5713E-05	-0.83413	-0.00044233	530.2827010984249	49.718	0.61103	50.472	50.193	50.804	0.75406					32	11	4	0	0	0	0.53367	1	18600	18600		18.146	2.2992	1	22669000			1996	6762	1262	1278	1985	1985					0.023959746747550525
AGKIAHTKSF	10	Unmodified	_AGKIAHTKSF_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	A375_MHC_IP_R2	2	529.7149658203125	2	530.300916	1058.58728	-0.67934	-0.00036025	-0.83508	-0.00044285	-1.5144	-0.0008031	530.2999992346117	41.681	0.60998	42.456	41.997	42.607	0.77451					15	11	2	0	0	0	0.92957	1	15381	15381		3.2813	0	1	3086300			1997	7983	1263	1279	1986	1986					0.06032851571490028
AGKIAQRQPL	10	Unmodified	_AGKIAQRQPL_					0	0	0			REV__nc|ENSG00000026559|Q9UIX4-2|KCNG1	REV__nc|ENSG00000026559|Q9UIX4-2|KCNG1	MULTI-SECPEP	A375_MHC_IP_R2	2	361.6203918457031	3	361.220735	1080.64038	-0.62359	-0.00022525	-0.60421	-0.00021825	-1.2278	-0.00044351	361.22053626816506	25.115	0.35731	25.759	25.516	25.873	0.64368					10	6	2	0	0	0	0.9269	1	8381	8381		3.5871	0	1	3826300	+		1998	16289	1264	1280	1987	1987					0.10328229354149698
AGKIFGSICSL	11	Unmodified	_AGKIFGSICSL_					0	0	0		ENSG00000184408|ENST00000331113|KCND2;nc|ENSG00000102057|Q9NSA2-2|KCND1;nc|ENSG00000171385|Q9UK17-2|KCND3;ENSG00000102057|ENST00000218176|KCND1;ENSG00000171385|ENST00000302127|KCND3	ENSG00000184408|ENST00000331113|KCND2	ENSG00000184408|ENST00000331113|KCND2	MULTI-SECPEP	A375_MHC_IP_R1	1	366.26708984375	3	365.867082	1094.57942	0.22286	8.1538E-05	-0.021105	-7.7218E-06	0.20176	7.3816E-05	365.86706913318966	34.078	0.45536	34.078	33.848	34.303	0					26	8	5	0	0	0	0.82225	1	11181	11181		9.7643	0	1	15838000			1999	8582	1265	1281	1988	1988					0.03590956259677114
AGKKCKGK	8	Unmodified	_AGKKCKGK_					0	0	0			REV__ENSG00000241058|ENST00000377304|NSUN6	REV__ENSG00000241058|ENST00000377304|NSUN6	MULTI-SECPEP	A375_MHC_IP_R1	1	819.9672241210938	1	819.486919	818.479642	0.031983	2.6209E-05	2.4935	0.0020434	2.5255	0.0020696	819.4905244194406	115.27	1.2676	115.27	114.52	115.78	0					35	24	4	0	0	0	0.972	1	42233	42233		0	0	1	7307000	+		2000	22784	1266	1282	1989	1989					0.0631418343639325
AGKLHCFTES	10	Unmodified	_AGKLHCFTES_					0	0	0		nc|ENSG00000203805|Q5VZY2-2|PLPP4;ENSG00000203805|ENST00000398250|PLPP4	nc|ENSG00000203805|Q5VZY2-2|PLPP4	nc|ENSG00000203805|Q5VZY2-2|PLPP4	MULTI-MSMS	A375_MHC_IP_R1	1	547.7033081054688	2	546.760766	1091.50698	-0.88405	-0.00048336	-1.2737	-0.00069642	-2.1578	-0.0011798	546.7607375963539	29.956	0.4026	29.956	29.798	30.2	0					12	7	3	0	0	0	0.70329	1	9402	9402		10.824	0.024421	1	7073100			2001	9396	1267	1283	1990	1990					-0.035113778139020724
AGKLKEGFMTL	11	Unmodified	_AGKLKEGFMTL_					0	0	0			REV__ENST00000549029.1_1_12:111351051-111352089:-|nuORF	REV__ENST00000549029.1_1_12:111351051-111352089:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	398.97979736328125	3	398.889886	1193.64783	0.093661	3.736E-05	-0.5464	-0.00021796	-0.45274	-0.00018059	398.8897176499481	43.517	0.35383	44.289	44.079	44.433	0.7724					11	6	3	0	0	0	0.82939	1	16247	16247		14.838	2.6103	1	1079700	+		2002	17657	1268	1284	1991	1991					0.05875200839545869
AGKLVLDGP	9	Unmodified	_AGKLVLDGP_					0	0	0			REV__ENSG00000091127|ENST00000469408|PUS7	REV__ENSG00000091127|ENST00000469408|PUS7	MSMS	A375_MHC_IP_R1	1	435.2823486328125	2	435.258185	868.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.178	1	35.178	34.678	35.678	0								0	0	0	0.15486	1	11677	11677		7.2892	0.56607	1		+		2003	16942	1269	1285	1992	1992					0.06230686385811168
AGKPLKKKDL	10	Unmodified	_AGKPLKKKDL_					0	0	0		tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1	tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1	tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	366.26708984375	3	366.572886	1096.69683	0.20325	7.4505E-05	0.31788	0.00011653	0.52113	0.00019103	366.57293177739376	34.136	0.75902	34.136	33.898	34.657	0					16	14	2	0	0	0	0.61429	1	11181	11181		20.581	0	1	1098800			2004	30059	1270	1286	1993	1993					0.15234857190785078
AGKTDILW	8	Unmodified	_AGKTDILW_					0	0	0		ENSG00000144395|ENST00000389175|CCDC150;ENST00000471546.5_1_2:197504460-197531652:+|nuORF;ENST00000471033.5_1_2:197521363-197521654:+|nuORF	ENSG00000144395|ENST00000389175|CCDC150	ENSG00000144395|ENST00000389175|CCDC150	MULTI-SECPEP	A375_MHC_IP_R1	1	452.6581726074219	2	452.25036	902.486168	0.023063	1.043E-05	-1.3602	-0.00061517	-1.3372	-0.00060474	452.2498307752377	72.128	0.25217	72.128	71.917	72.169	0					6	4	2	0	0	0	0.97144	1	26186	26186		9.3474	1.4373	1	613170			2005	5483	1271	1287	1994	1994					0.031023998687601306
AGKTGKAY	8	Unmodified	_AGKTGKAY_					0	0	0		nc|ENSG00000089094|Q8NHM5-2|KDM2B	nc|ENSG00000089094|Q8NHM5-2|KDM2B	nc|ENSG00000089094|Q8NHM5-2|KDM2B	MULTI-SECPEP	A375_MHC_IP_R1	1	397.626220703125	2	398.221603	794.428653	-0.29674	-0.00011817	0.30874	0.00012295	0.012004	4.7802E-06	398.22167347849194	41.004	0.35194	41.004	40.813	41.164	0					11	6	2	0	0	0	0.90224	1	14065	14065		19.439	10.092	1	2625300			2006	14496	1272	1288	1995	1995					0.023215576631855583
AGKTTILKKF	10	Unmodified	_AGKTTILKKF_					0	0	0		nc|ENSG00000213465|P36404-2|ARL2;ENSG00000213465|ENST00000246747|ARL2;ENST00000524585.1_1_11:64781679-64786448:+|nuORF	nc|ENSG00000213465|P36404-2|ARL2	nc|ENSG00000213465|P36404-2|ARL2	MULTI-MSMS	A375_MHC_IP_R2	2	369.9691467285156	3	369.569253	1105.68593	-0.017845	-6.595E-06	0.017965	6.6395E-06	0.00012036	4.4483E-08	369.56918041362235	19.943	0.60626	20.553	20.095	20.701	0.61029					26	11	3	0	0	0	0.72006	1	6130	6130		3.3196	0.82116	1	1589000			2007	9567	1273	1289	1996	1996					0.13731454816502264
AGLAPGELQQL	11	Unmodified	_AGLAPGELQQL_					0	0	0		ENST00000477976.5_1_1:880076-889593:-|nuORF;ENST00000483767.5_1_1:880076-882054:-|nuORF;ENSG00000188976|ENST00000327044|NOC2L	ENST00000477976.5_1_1:880076-889593:-|nuORF;ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	MULTI-SECPEP	A375_MHC_IP_R2	2	549.178955078125	2	548.803488	1095.59242	-0.71936	-0.00039479	0.71742	0.00039372	-0.0019382	-1.0637E-06	548.8038037407765	42.499	0.60978	43.272	43.014	43.623	0.7724					14	11	2	0	0	0	0.79632	1	15947	15947		18.146	0	1	2005500			2008	12454;8948	1274	1290	1997	1997					0.048451106434413305
AGLCNRADFK	10	Unmodified	_AGLCNRADFK_					0	0	0		ENSG00000132681|ENST00000368081|ATP1A4	ENSG00000132681|ENST00000368081|ATP1A4	ENSG00000132681|ENST00000368081|ATP1A4	MULTI-SECPEP	A375_MHC_IP_R2	2	365.9731140136719	3	365.518564	1093.53386	-0.4842	-0.00017698	2.5539	0.00093349	2.0697	0.00075651	365.8538758576111	29.743	0.25105	30.442	30.286	30.537	0.69872					5	4	2	0	0	0	0.92389	1	10443	10443		3.8763	2.3944	1	745220			2009	4440	1275	1291	1998	1998					-0.009162692027075536
AGLELLHP	8	Unmodified	_AGLELLHP_					0	0	0		ENST00000421108.1_1_17:18419857-18420688:-|nuORF	ENST00000421108.1_1_17:18419857-18420688:-|nuORF	ENST00000421108.1_1_17:18419857-18420688:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	424.5946350097656	2	425.245078	848.475603	0.0079778	3.3925E-06	-0.80415	-0.00034196	-0.79617	-0.00033857	425.24495518070233	43.425	0.45766	43.425	43.197	43.655	0					10	8	2	0	0	0	0.95423	1	15125	15125		12.532	0	1	1447500			2010	11735	1276	1292	1999	1999					0.04530417214323279
AGLERYEGSY	10	Unmodified	_AGLERYEGSY_					0	0	0			REV__nc|ENSG00000198513|Q8WXF7-2|ATL1	REV__nc|ENSG00000198513|Q8WXF7-2|ATL1	MULTI-SECPEP	A375_MHC_IP_R2	2	572.7020263671875	2	572.767103	1143.51965	-0.46142	-0.00026429	1.8297	0.001048	1.3683	0.00078369	573.2716161821718	62.134	0.20156	62.876	62.724	62.925	0.74263					5	3	2	0	0	0	0.78945	1	23557	23557		13.906	0	1	815060	+		2011	22376	1277	1293	2000	2000					-0.046366431500018734
AGLGDGSIRVY	11	Unmodified	_AGLGDGSIRVY_					0	0	0		ENSG00000141564|ENST00000306801|RPTOR;nc|ENSG00000141564|Q8N122-3|RPTOR	ENSG00000141564|ENST00000306801|RPTOR	ENSG00000141564|ENST00000306801|RPTOR	MULTI-SECPEP	A375_MHC_IP_R1	1	369.2732238769531	3	369.864617	1106.57202	-0.04681	-1.7313E-05	0.55168	0.00020405	0.50487	0.00018673	370.19930544152237	29.924	0.45226	29.924	29.748	30.2	0					14	8	2	0	0	0	0.86796	1	9401	9401		16.275	9.6442	1	11862000			2012	5257	1278	1294	2001	2001					0.0229993998361806
AGLGKLRQAI	10	Unmodified	_AGLGKLRQAI_					0	0	0			REV__nc|ENSG00000068120|Q13057-2|COASY	REV__nc|ENSG00000068120|Q13057-2|COASY	MULTI-SECPEP	A375_MHC_IP_R1	1	513.9673461914062	2	513.824558	1025.63456	-0.45375	-0.00023315	-1.0287	-0.0005286	-1.4825	-0.00076175	513.8239843198442	25.219	0.20205	25.219	25.104	25.306	0					5	3	2	0	0	0	0.85226	1	7287	7287		10.074	0	1	2452700	+		2013	16539	1279	1295	2002	2002					0.12277130842471706
AGLIATALLSF	11	Unmodified	_AGLIATALLSF_					0	0	0			REV__ENSG00000146802|ENST00000312814|TMEM168	REV__ENSG00000146802|ENST00000312814|TMEM168	MULTI-SECPEP	A375_MHC_IP_R2	2	539.2208862304688	2	538.82115	1075.62775	-0.91295	-0.00049192	0.14547	7.8381E-05	-0.76748	-0.00041353	538.8212479809971	81.907	0.66139	82.65	82.381	83.042	0.74293					27	12	3	0	0	0	0.67995	1	31119	31119		26.268	2.2476	1	4363400	+		2014	19549	1280	1296	2003	2003					0.0929577317122039
AGLLLLLQL	9	Unmodified	_AGLLLLLQL_					0	0	0			REV__ENSG00000130812|ENST00000253109|ANGPTL6	REV__ENSG00000130812|ENST00000253109|ANGPTL6	MULTI-SECPEP	A375_MHC_IP_R1	1	477.7232666015625	2	477.323328	952.632104	-0.27591	-0.0001317	0.3887	0.00018554	0.11279	5.3839E-05	477.3234505167673	107.06	0.66423	107.06	106.78	107.44	0					23	12	3	0	0	0	0.12259	1	39270	39270		44.407	0	1	2807400	+		2015	18567	1281	1297	2004	2004					0.15389282384796843
AGLLLLLQL	9	Unmodified	_AGLLLLLQL_					0	0	0			REV__ENSG00000130812|ENST00000253109|ANGPTL6	REV__ENSG00000130812|ENST00000253109|ANGPTL6	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	477.323328	952.632104	-0.55276	-0.00026384	-0.13426	-6.4085E-05	-0.68702	-0.00032793	477.3232147635792	105.91	0.71408	106.67	106.48	107.19	0.75977	-0.19486	-0.00026146	NaN	44.407	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1541100	+		2016	18567	1281	1297							0.15389282384796843
AGLQEQLAQA	10	Unmodified	_AGLQEQLAQA_					0	0	0			REV__ENSG00000186648|ENST00000342740|CARMIL3	REV__ENSG00000186648|ENST00000342740|CARMIL3	MULTI-MSMS	A375_MHC_IP_R1	1	514.6717529296875	2	514.772188	1027.52982	-0.42098	-0.00021671	1.6038	0.00082561	1.1828	0.0006089	514.7730872771624	97.249	0.30277	97.249	97.036	97.338	0					7	5	2	0	0	0	0.60556	1	35760	35760		20.454	5.2051	1	739990	+		2017	21980	1282	1298	2005	2005					0.01715964575214457
AGLQFPVGR	9	Unmodified	_AGLQFPVGR_					0	0	0		nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000274997|ENST00000377459|H2AC12;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000188486|ENST00000530167|H2AX;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000105968|Q71UI9-5|H2AZ2;ENSG00000105968|ENST00000308153|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;nc|ENSG00000105968|Q71UI9-2|H2AZ2;ENST00000511319.5_1_4:100869621-100871200:-|nuORF	nc|ENSG00000288859|Q6FI13|H2AC18	nc|ENSG00000288859|Q6FI13|H2AC18	MULTI-MSMS	A375_MHC_IP_R2	2	473.16900634765625	2	472.769252	943.52395	-0.86927	-0.00041096	-0.024164	-1.1424E-05	-0.89343	-0.00042239	472.76926398639006	60.441	0.46045	61.186	60.903	61.364	0.74503					11	8	2	0	0	0	0.53367	1	22913	22913		18.146	1.2041	1	2547700			2018	8566	1283	1299	2006	2006					0.04992910854230104
AGLRSVHLL	9	Unmodified	_AGLRSVHLL_					0	0	0		ENST00000487159.5_2_3:42055459-42128703:+|nuORF	ENST00000487159.5_2_3:42055459-42128703:+|nuORF	ENST00000487159.5_2_3:42055459-42128703:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6576843261719	2	483.298176	964.581799	-0.71601	-0.00034605	0.013404	6.4783E-06	-0.70261	-0.00033957	483.2981523277695	36.053	0.6126	36.817	36.587	37.2	0.76338					18	11	2	0	0	0	0.58271	1	13075	13075		14.838	0	1	5161700			2019	12593	1284	1300	2007	2007					0.09809172779660003
AGLTQQLLL	9	Unmodified	_AGLTQQLLL_					0	0	0			REV__ENST00000339464.8_1_22:46316419-46316704:-|nuORF	REV__ENST00000339464.8_1_22:46316419-46316704:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	479.19219970703125	2	478.792392	955.570232	-0.57621	-0.00027589	-0.37052	-0.0001774	-0.94673	-0.00045329	478.79245894753967	75.383	0.66237	76.123	75.825	76.487	0.74052					21	12	2	0	0	0	0.24548	1	28595	28595		36.127	0	1	3070700	+		2020	23710	1285	1301	2008	2008					0.09066930965661868
AGLTSPRIVL	10	Unmodified	_AGLTSPRIVL_					0	0	0		MAP3K14|p.P454L|1|0.33|ENSG00000006062|chr17:45274523-45274523|G/A|missense_variant	MAP3K14|p.P454L|1|0.33|ENSG00000006062|chr17:45274523-45274523|G/A|missense_variant	MAP3K14|p.P454L|1|0.33|ENSG00000006062|chr17:45274523-45274523|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	513.1921997070312	2	513.818941	1025.62333	-0.71681	-0.00036831	0.29703	0.00015262	-0.41977	-0.00021569	513.818954246946	64.595	0.3063	65.335	65.157	65.463	0.74022					7	5	2	0	0	0	0.85226	1	24534	24534		10.074	0	1	908720			2021	14347	1286	1302	2009	2009					0.11154308748336916
AGLVHEYRTSF	11	Unmodified	_AGLVHEYRTSF_					0	0	0			REV__ENSG00000011405|ENST00000691414|PIK3C2A	REV__ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	A375_MHC_IP_R2	2	427.6186828613281	3	427.219172	1278.63569	-0.22444	-9.5884E-05	-0.67223	-0.00028719	-0.89666	-0.00038307	427.2187297750566	70.699	1.3683	71.433	70.743	72.111	0.73421					43	26	3	0	0	0	0.72515	1	26770	26770		13.519	2.0008	1	24537000	+		2022	16208	1287	1303	2010	2010					0.007513004206884943
AGLWFQCW	8	Unmodified	_AGLWFQCW_					0	0	0		ENST00000486860.5_1_7:87839387-87846454:-|nuORF;ENST00000419179.5_1_7:87838740-87846454:-|nuORF	ENST00000486860.5_1_7:87839387-87846454:-|nuORF	ENST00000486860.5_1_7:87839387-87846454:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	505.6745910644531	2	505.73128	1009.44801	-0.40266	-0.00020364	0.33317	0.00016849	-0.06949	-3.5143E-05	505.73126443832723	58.084	0.65916	58.084	57.72	58.379	0					16	12	2	0	0	0	0.77554	1	20787	20787		11.114	11.114	1	1081700			2023	12588	1288	1304	2011	2011					-0.05633809317566829
AGLWFQCW	8	Unmodified	_AGLWFQCW_					0	0	0		ENST00000486860.5_1_7:87839387-87846454:-|nuORF;ENST00000419179.5_1_7:87838740-87846454:-|nuORF	ENST00000486860.5_1_7:87839387-87846454:-|nuORF	ENST00000486860.5_1_7:87839387-87846454:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	505.73128	1009.44801	-0.40266	-0.00020364	0.33317	0.00016849	-0.06949	-3.5143E-05	505.73126443832723	58.084	0.65916	58.084	57.72	58.379	0	0.040248	-0.00026518	NaN	11.114	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1081700			2024	12588	1288	1304							-0.05633809317566829
AGLWFQCW	8	Unmodified	_AGLWFQCW_					0	0	0		ENST00000486860.5_1_7:87839387-87846454:-|nuORF;ENST00000419179.5_1_7:87838740-87846454:-|nuORF	ENST00000486860.5_1_7:87839387-87846454:-|nuORF	ENST00000486860.5_1_7:87839387-87846454:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	505.73128	1009.44801	-1.0843	-0.00054835	0.91962	0.00046508	-0.16465	-8.3269E-05	505.73160349954463	57.254	0.66514	58.003	57.762	58.427	0.74894	-0.040248	0.00032799	NaN	11.114	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1329500			2025	12588	1288	1304							-0.05633809317566829
AGMLAATIQIQ	11	Unmodified	_AGMLAATIQIQ_					0	0	0			REV__ENST00000582740.1_1_17:56700236-56725433:-|nuORF	REV__ENST00000582740.1_1_17:56700236-56725433:-|nuORF	MSMS	A375_MHC_IP_R2	2	372.8757629394531	3	372.874236	1115.60088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.288	1	26.948	26.448	27.448	0.65992								0	0	0	0.1624	1	8869	8869		2.8433	0	1		+		2026	26359	1289	1305	2012	2012					0.04770341288394775
AGPDFQIKV	9	Unmodified	_AGPDFQIKV_					0	0	0		nc|ENSG00000182010|Q8IZC4-2|RTKN2;ENSG00000182010|ENST00000373789|RTKN2	nc|ENSG00000182010|Q8IZC4-2|RTKN2	nc|ENSG00000182010|Q8IZC4-2|RTKN2	MULTI-MSMS	A375_MHC_IP_R2	2	487.6981201171875	2	487.768917	973.523281	-0.65304	-0.00031853	0.46345	0.00022606	-0.18959	-9.2478E-05	487.76910735930494	107.25	0.71089	108.01	107.64	108.35	0.75436					21	13	2	0	0	0	0.5339	1	40449	40449		18.135	1.1927	1	2484900			2027	8371	1290	1306	2013	2013					0.03546071414530161
AGPEKRPKSSR	11	Unmodified	_AGPEKRPKSSR_					0	0	0		ENSG00000130669|ENST00000360442|PAK4	ENSG00000130669|ENST00000360442|PAK4	ENSG00000130669|ENST00000360442|PAK4	MSMS	A375_MHC_IP_R1	1	606.770263671875	2	606.84401	1211.67347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.83	1	129.83	129.33	130.33	0								0	0	0	0.16265	1	49946	49946		4.897	0	1				2028	4261	1291	1307	2014	2014					0.07609811406155131
AGPEQKYWY	9	Unmodified	_AGPEQKYWY_					0	0	0			REV__nc|ENSG00000211779|A0A0B4J249|TRAV5	REV__nc|ENSG00000211779|A0A0B4J249|TRAV5	MULTI-SECPEP	A375_MHC_IP_R2	2	571.5994262695312	2	571.269281	1140.52401	-0.29633	-0.00016928	1.7405	0.0009943	1.4442	0.00082502	571.2714033260113	67.31	0.3051	68.046	67.9	68.205	0.73631					8	5	2	0	0	0	0.77244	1	25500	25500		0.6015	0	1	661290	+		2029	27476	1292	1308	2015	2015					-0.04063133936415397
AGPGAGAG	8	Unmodified	_AGPGAGAG_					0	0	0		ENST00000487451.1_1_X:48896773-48897261:-|nuORF;nc|ENSG00000101190|Q9UL49-1|TCFL5;ENSG00000101190|ENST00000335351|TCFL5	REV__ENSG00000114166|ENST00000263754|KAT2B;nc|ENSG00000101190|Q9UL49-1|TCFL5;REV__nc|ENSG00000136379|Q6PCB6-2|ABHD17C	REV__ENSG00000114166|ENST00000263754|KAT2B	MULTI-SECPEP	A375_MHC_IP_R2	2	556.596435546875	1	557.267801	556.260525	-1.2201	-0.0006799	2.5268	0.0014081	1.3067	0.00072819	557.2645474298944	52.683	0.3545	53.434	53.134	53.488	0.75169					10	6	2	0	0	0	0.972	1	19859	19859		0.79363	0	1	873590			2030	17815;2267;18933	1293	1309	2016	2016					-0.03535504530611888
AGPKLHNL	8	Unmodified	_AGPKLHNL_					0	0	0			REV__ADAMTS20|p.S1840Rfs*14|1|0.32|ENSG00000173157|chr12:43369308-43369309|-/CTGTAGCAAT|frameshift_variant	REV__ADAMTS20|p.S1840Rfs*14|1|0.32|ENSG00000173157|chr12:43369308-43369309|-/CTGTAGCAAT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	425.1291198730469	2	425.250695	848.486836	-0.045743	-1.9452E-05	-0.15702	-6.6773E-05	-0.20276	-8.6226E-05	425.25075398174835	33.654	0.30039	33.654	33.547	33.848	0					8	5	2	0	0	0	0.85124	1	10981	10981		26.341	5.4701	1	899420	+		2031	15324	1294	1310	2017	2017					0.05653239308469438
AGPKLHNL	8	Unmodified	_AGPKLHNL_					0	0	0			REV__ADAMTS20|p.S1840Rfs*14|1|0.32|ENSG00000173157|chr12:43369308-43369309|-/CTGTAGCAAT|frameshift_variant	REV__ADAMTS20|p.S1840Rfs*14|1|0.32|ENSG00000173157|chr12:43369308-43369309|-/CTGTAGCAAT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	425.12890625	2	425.250695	848.486836	-0.23052	-9.8027E-05	-0.32952	-0.00014013	-0.56004	-0.00023816	425.2504620746803	32.767	0.30431	33.504	33.367	33.671	0.73692					8	5	2	0	0	0	0.93416	1	11727	11727		20.871	2.7362	1	1111700	+		2032	15324	1294	1310	2018	2018					0.05653239308469438
AGPKRKKFIKR	11	Unmodified	_AGPKRKKFIKR_					0	0	0			REV__ENSG00000156395|ENST00000369701|SORCS3	REV__ENSG00000156395|ENST00000369701|SORCS3	MSMS	A375_MHC_IP_R1	1	665.01025390625	2	664.935506	1327.85646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.81	1	123.81	123.31	124.31	0								0	0	0	0.16331	1	46361	46361		1.4819	0	1		+		2033	19978	1295	1311	2019	2019					0.2056441025863478
AGPLPPFSSL	10	Unmodified	_AGPLPPFSSL_					0	0	0			REV__ENSG00000107929|ENST00000316157|LARP4B	REV__ENSG00000107929|ENST00000316157|LARP4B	MULTI-SECPEP	A375_MHC_IP_R2	2	492.47735595703125	2	493.271293	984.528032	-0.49151	-0.00024245	2.294	0.0011316	1.8025	0.00088912	493.27319687026096	45.762	0.25086	46.527	46.403	46.654	0.76519					6	4	2	0	0	0	0.92389	1	17077	17077		0.40072	0.40072	1	927530	+		2034	17505	1296	1312	2020	2020					0.035149555572729696
AGPLQVGFP	9	Unmodified	_AGPLQVGFP_					0	0	0			REV__nc|ENSG00000198488|Q6ZMB0-2|B3GNT6	REV__nc|ENSG00000198488|Q6ZMB0-2|B3GNT6	MULTI-SECPEP	A375_MHC_IP_R1	1	884.8873291015625	1	885.482879	884.475603	-0.20568	-0.00018213	1.2895	0.0011418	1.0838	0.00095971	885.4842375480337	100.61	0.50574	100.61	100.43	100.94	0					14	9	2	0	0	0	0.75466	1	37096	37096		7.9102	2.1497	1	1782400	+		2035	22375	1297	1313	2021	2021					0.0287441721433197
AGPLQVGFP	9	Unmodified	_AGPLQVGFP_					0	0	0			REV__nc|ENSG00000198488|Q6ZMB0-2|B3GNT6	REV__nc|ENSG00000198488|Q6ZMB0-2|B3GNT6	MULTI-MATCH	A375_MHC_IP_R2	2		1	885.482879	884.475603	-0.24451	-0.00021651	0.50633	0.00044834	0.26182	0.00023184	885.4830000982237	99.837	0.40527	100.6	100.32	100.73	0.76278	-0.0045511	-0.00015697	NaN	7.9102	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1589600	+		2036	22375	1297	1313							0.0287441721433197
AGPPAAAEV	9	Unmodified	_AGPPAAAEV_					0	0	0		ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-5|ANKRD17;ANKRD17|p.Q529Rfs*10|1|0.07|ENSG00000132466|chr4:73147415-73147415|G/-|frameshift_variant	ENSG00000132466|ENST00000358602|ANKRD17	ENSG00000132466|ENST00000358602|ANKRD17	MULTI-SECPEP	A375_MHC_IP_R1	1	782.2108154296875	1	782.404295	781.397018	-0.34367	-0.00026889	-0.34223	-0.00026776	-0.68591	-0.00053666	782.4040393536719	37.618	0.51119	37.618	37.301	37.812	0					13	9	2	0	0	0	0.40041	1	12606	12606		30.225	12.09	1	3291100			2037	4411	1298	1314	2022	2022					-0.0024243509077450653
AGPQRLLL	8	Unmodified	_AGPQRLLL_					0	0	0			REV__ENST00000538423.5_1_19:41903720-41916874:+|nuORF	REV__ENST00000538423.5_1_19:41903720-41916874:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	435.17523193359375	2	434.27417	866.533787	-0.19771	-8.5861E-05	-0.1264	-5.4891E-05	-0.32411	-0.00014075	434.27412902111564	63.68	1.628	64.42	63.936	65.564	0.74022					109	31	5	0	0	0	0.41058	1	24074	24074		52.693	3.0242	1	278460000	+		2038	22831	1299	1315	2023	2023					0.09518098859621205
AGPRLQLL	8	Unmodified	_AGPRLQLL_					0	0	0			REV__ENSG00000167600|ENST00000310054|CYP2S1	REV__ENSG00000167600|ENST00000310054|CYP2S1	MULTI-MSMS	A375_MHC_IP_R1	1	435.2821350097656	2	434.27417	866.533787	-0.23175	-0.00010064	0.23239	0.00010092	0.0006381	2.7711E-07	434.2742694630885	64.725	1.7792	64.725	64.04	65.819	0					109	34	5	0	0	0	0.32803	2	23411	23411;23795		56.541	5.6862	1	257160000	+		2039	20774	1300	1316	2024;2025	2024					0.09518098859621205
AGPRLQLL	8	Unmodified	_AGPRLQLL_					0	0	0			REV__ENSG00000167600|ENST00000310054|CYP2S1	REV__ENSG00000167600|ENST00000310054|CYP2S1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	434.27417	866.533787	-0.23175	-0.00010064	0.23239	0.00010092	0.0006381	2.7711E-07	434.2742694630885	64.725	1.7792	64.725	64.04	65.819	0	0.15284	9.9662E-05	NaN	56.541	109	34	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257160000	+		2040	20774	1300	1316							0.09518098859621205
AGPTAPVVP	9	Unmodified	_AGPTAPVVP_					0	0	0			REV__AluJr_dup55786|chr12:55959098-55959386:+|1.4066961328933956|0.017221199365652|6.35|407.0|11|3|sense	REV__AluJr_dup55786|chr12:55959098-55959386:+|1.4066961328933956|0.017221199365652|6.35|407.0|11|3|sense	MULTI-SECPEP	A375_MHC_IP_R1	1	808.8599853515625	1	808.45633	807.449054	-0.12481	-0.00010091	1.0489	0.00084801	0.92412	0.00074711	808.4574413203358	116.68	0.40692	116.68	116.55	116.95	0					10	7	2	0	0	0	0.74651	1	42828	42828		13.508	9.1786	1	4056600	+		2041	15365	1301	1317	2026	2026					0.037627283229994646
AGPTAPVVP	9	Unmodified	_AGPTAPVVP_					0	0	0			REV__AluJr_dup55786|chr12:55959098-55959386:+|1.4066961328933956|0.017221199365652|6.35|407.0|11|3|sense	REV__AluJr_dup55786|chr12:55959098-55959386:+|1.4066961328933956|0.017221199365652|6.35|407.0|11|3|sense	MULTI-MATCH	A375_MHC_IP_R2	2		1	808.45633	807.449054	-0.70292	-0.00056828	-0.3557	-0.00028757	-1.0586	-0.00085585	808.4559993064524	115.65	0.40717	116.34	116.19	116.59	0.69	-0.16642	-0.00016246	NaN	13.508	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3806600	+		2042	15365	1301	1317							0.037627283229994646
AGPTRLLEEY	10	Unmodified	_AGPTRLLEEY_					0	0	0			REV__NF1|p.H647Y|1|0.24|ENSG00000196712|chr17:31225188-31225188|C/T|missense_variant	REV__NF1|p.H647Y|1|0.24|ENSG00000196712|chr17:31225188-31225188|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	574.7108154296875	2	574.800946	1147.58734	-0.46058	-0.00026474	0.25723	0.00014786	-0.20335	-0.00011688	574.8012783558635	38.386	0.45901	38.386	38.118	38.577	0					18	8	3	0	0	0	0.48529	1	12957	12957		29.082	2.8134	1	11508000	+		2043	27596	1302	1318	2027	2027					0.01944806780829822
AGPVGDDM	8	Unmodified	_AGPVGDDM_					0	0	0		ENST00000503282.1_1_4:103730810-103747665:-|nuORF;ENST00000503742.5_1_4:103723687-103747665:-|nuORF;ENSG00000131508|ENST00000398733|UBE2D2;ENSG00000109332|ENST00000453744|UBE2D3;nc|ENSG00000109332|P61077-2|UBE2D3;nc|ENSG00000109332|P61077-3|UBE2D3	ENST00000503282.1_1_4:103730810-103747665:-|nuORF	ENST00000503282.1_1_4:103730810-103747665:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	762.5756225585938	1	761.313431	760.306154	-0.86463	-0.00065825	1.3576	0.0010336	0.49299	0.00037532	761.3158838929489	126.5	0.24966	126.79	126.63	126.88	0.2951					6	4	2	0	0	0	0.77686	1	49439	49439		6.3541	0	1	7636700			2044	2866	1303	1319	2028	2028					-0.08358647130535246
AGPYITFT	8	Unmodified	_AGPYITFT_					0	0	0		nc|ENSG00000144857|Q9BWV1|BOC;ENSG00000144857|ENST00000682979|BOC	nc|ENSG00000144857|Q9BWV1|BOC	nc|ENSG00000144857|Q9BWV1|BOC	MSMS	A375_MHC_IP_R1	1	435.2821960449219	2	435.223811	868.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.746	1	94.746	94.246	95.246	0								0	0	0	0.16876	1	34824	34824		5.7604	2.8712	1				2045	5523	1304	1320	2029	2029					-0.006409779139062266
AGPYLLKLYK	10	Unmodified	_AGPYLLKLYK_					0	0	0			REV__ENST00000367456.5_1_6:149691155-149699232:+|nuORF	REV__ENST00000367456.5_1_6:149691155-149699232:+|nuORF	MSMS	A375_MHC_IP_R2	2	389.280029296875	3	389.237504	1164.69068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.902	1	31.621	31.121	32.121	0.71857								0	0	0	0.15397	1	10893	10893		7.9454	2.162	1		+		2046	23971	1305	1321	2030	2030					0.11492338959283188
AGQHQFQY	8	Unmodified	_AGQHQFQY_					0	0	0			REV__ENST00000498717.2_1_3:143566691-143567164:-|nuORF	REV__ENST00000498717.2_1_3:143566691-143567164:-|nuORF	MSMS	A375_MHC_IP_R1	1	489.6543884277344	2	489.725041	977.435529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.824	1	19.824	19.324	20.324	0								0	0	0	0.16876	1	5000	5000		5.2307	0.47466	1		+		2047	21666	1306	1322	2031	2031					-0.05409129456234041
AGQRVSVF	8	Unmodified	_AGQRVSVF_					0	0	0			REV__PCDH17|p.P860Sfs*17|1|0.3|ENSG00000118946|chr13:57666475-57666476|-/T|frameshift_variant	REV__PCDH17|p.P860Sfs*17|1|0.3|ENSG00000118946|chr13:57666475-57666476|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	432.6404724121094	2	432.240327	862.466101	-0.10798	-4.6671E-05	-0.17959	-7.7626E-05	-0.28756	-0.0001243	432.24029112740635	43.666	0.35672	43.666	43.451	43.808	0					10	6	2	0	0	0	0.92636	1	15235	15235		16.942	0	1	1759400	+		2048	18057	1307	1323	2032	2032					0.029366489288122466
AGQSMIPEQY	10	Unmodified	_AGQSMIPEQY_					0	0	0			REV__nc|ENSG00000198408|O60502-3|OGA	REV__nc|ENSG00000198408|O60502-3|OGA	MULTI-MSMS	A375_MHC_IP_R1	1	562.685302734375	2	562.258056	1122.50156	-0.26439	-0.00014865	-2.3805	-0.0013384	-2.6449	-0.0014871	562.2570632872354	49.922	0.96932	49.922	49.336	50.305	0					35	18	3	0	0	0	0.58828	1	17542	17542		21.747	3.6003	1	3977200	+		2049	22369	1308	1324	2033	2033					-0.05479101396349506
AGQWFLKVW	9	Unmodified	_AGQWFLKVW_					0	0	0		ENST00000533911.1_1_11:75154120-75160980:-|nuORF;ENST00000527322.5_1_11:75154120-75168815:-|nuORF	ENST00000533911.1_1_11:75154120-75160980:-|nuORF	ENST00000533911.1_1_11:75154120-75160980:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	378.9813232421875	3	378.874677	1133.6022	0.29592	0.00011212	-2.757	-0.0010446	-2.4611	-0.00093246	378.873418862216	43.858	0.50428	44.627	44.43	44.934	0.7691					15	9	2	0	0	0	0.75466	1	16411	16411		4.897	0	1	1357700			2050	13096	1309	1325	2034	2034					0.04074343439469885
AGRGLAIW	8	Unmodified	_AGRGLAIW_					0	0	0		chr13:77903607-77912239|165|163.13|0.25|9.37|-|2|EDNRB,None|1	chr13:77903607-77912239|165|163.13|0.25|9.37|-|2|EDNRB,None|1	chr13:77903607-77912239|165|163.13|0.25|9.37|-|2|EDNRB,None|1	MULTI-MSMS	A375_MHC_IP_R2	2	422.6451110839844	2	422.245412	842.476272	-0.71474	-0.0003018	-0.06938	-2.9296E-05	-0.78412	-0.00033109	422.2453099635759	28.66	0.20036	29.358	29.234	29.434	0.69872					5	3	2	0	0	0	0.7758	1	9941	9941		10.183	0	1	17747000			2051	423	1310	1326	2035	2035					0.048732566540252265
AGRKLALKTID	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AGRKLALKTID_					1	0	0		ENST00000582341.1_1_17:73038242-73038745:-|nuORF;nc|ENSG00000167863|O75947-2|ATP5PD;ENSG00000167863|ENST00000301587|ATP5PD	ENST00000582341.1_1_17:73038242-73038745:-|nuORF	ENST00000582341.1_1_17:73038242-73038745:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	410.3187255859375	3	409.918834	1226.73467	-0.021678	-8.8864E-06	-0.23931	-9.8098E-05	-0.26099	-0.00010698	409.9187470890408	39.622	0.40663	40.397	40.118	40.524	0.77451					14	7	2	0	0	0	0.33933	1	14649	14649		43.713	31.915	1	3173000			2052	7230	1311	1327	2036	2036					0.13037323385606214
AGRLGLWA	8	Unmodified	_AGRLGLWA_					0	0	0		ENST00000262370.11_1_16:4740150-4740852:+|nuORF	ENST00000262370.11_1_16:4740150-4740852:+|nuORF	ENST00000262370.11_1_16:4740150-4740852:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	422.6453552246094	2	422.245412	842.476272	-0.45101	-0.00019044	0.13165	5.5587E-05	-0.31937	-0.00013485	422.2453668837241	29.46	0.35452	29.46	29.302	29.657	0					9	6	2	0	0	0	0.76683	1	9244	9244		15.768	1.1865	1	16507000			2053	10300	1312	1328	2037	2037					0.04873256654036595
AGRLQRAA	8	Unmodified	_AGRLQRAA_					0	0	0		ENST00000256257.1_1_8:33424221-33424608:-|nuORF	ENST00000256257.1_1_8:33424221-33424608:-|nuORF	ENST00000256257.1_1_8:33424221-33424608:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	422.15142822265625	2	421.751393	841.488233	0.10787	4.5493E-05	0.05968	2.517E-05	0.16755	7.0663E-05	421.75133770899765	99.975	1.9333	100.74	99.304	101.24	0.76278					55	37	2	0	0	0	0.77717	1	37385	37385		5.2307	0	1	3557900			2054	10236	1313	1329	2038	2038					0.06114873397223164
AGRLQRQFW	9	Unmodified	_AGRLQRQFW_					0	0	0			REV__ENST00000589294.1_1_19:10248495-10248684:-|nuORF	REV__ENST00000589294.1_1_19:10248495-10248684:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	387.5997314453125	3	387.880713	1160.62031	-0.57731	-0.00022393	-2.427	-0.00094137	-3.0043	-0.0011653	387.87888852371657	25.235	0.60987	25.879	25.568	26.178	0.64368					14	11	2	0	0	0	0.74169	1	8492	8492		7.609	0	1	1157500	+		2055	18568	1314	1330	2039	2039					0.046424784141890996
AGRNSPWQI	9	Unmodified	_AGRNSPWQI_					0	0	0		ENST00000565738.1_1_16:75674022-75675473:-|nuORF	ENST00000565738.1_1_16:75674022-75675473:-|nuORF	ENST00000565738.1_1_16:75674022-75675473:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	515.165771484375	2	514.76724	1027.51993	-0.74397	-0.00038297	0.3391	0.00017456	-0.40487	-0.00020842	514.7662928027979	103.18	0.55925	103.95	103.63	104.19	0.76428					19	10	3	0	0	0	0.5339	1	39097	39097		18.135	2.2878	1	2110800			2056	13550	1315	1331	2040	2040					0.0072682136051298585
AGRPGAPAW	9	Unmodified	_AGRPGAPAW_					0	0	0			REV__ENST00000527920.5_1_11:65339976-65340141:+|nuORF	REV__ENST00000527920.5_1_11:65339976-65340141:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	442.13226318359375	2	441.732669	881.450785	-0.64045	-0.00028291	-0.047965	-2.1188E-05	-0.68841	-0.00030409	441.73261385556873	36.465	0.61005	37.235	37.005	37.615	0.7709					24	11	3	0	0	0	0.43707	1	13273	13273		21.747	0	1	12270000	+		2057	25794	1316	1332	2041	2041					0.005317821316111804
AGSALPGEI	9	Unmodified	_AGSALPGEI_					0	0	0		ENST00000473414.5_1_3:149470236-149470281:-|nuORF	ENST00000473414.5_1_3:149470236-149470281:-|nuORF	ENST00000473414.5_1_3:149470236-149470281:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	814.2788696289062	1	814.430509	813.423233	-0.40499	-0.00032984	0.30261	0.00024646	-0.10238	-8.3381E-05	814.4304607121311	99.534	0.75829	99.534	99.268	100.03	0					21	14	2	0	0	0	0.0090669	1	36621	36621		100.37	10.945	1	6409400			2058	12390	1317	1333	2042	2042					0.00905834080731438
AGSALPGEI	9	Unmodified	_AGSALPGEI_					0	0	0		ENST00000473414.5_1_3:149470236-149470281:-|nuORF	ENST00000473414.5_1_3:149470236-149470281:-|nuORF	ENST00000473414.5_1_3:149470236-149470281:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	814.430509	813.423233	-0.7407	-0.00060325	0.35272	0.00028726	-0.38799	-0.00031599	814.430611391437	98.844	0.71181	99.604	99.301	100.01	0.75977	0.035285	2.2911E-05	NaN	100.37	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8510200			2059	12390	1317	1333							0.00905834080731438
AGSFHCAC	8	Unmodified	_AGSFHCAC_					0	0	0		ENSG00000090006|ENST00000396819|LTBP4;nc|ENSG00000090006|Q8N2S1-3|LTBP4;nc|ENSG00000090006|Q8N2S1|LTBP4	ENSG00000090006|ENST00000396819|LTBP4	ENSG00000090006|ENST00000396819|LTBP4	MULTI-SECPEP	A375_MHC_IP_R2	2	795.47900390625	1	795.291256	794.283979	-0.98202	-0.00078099	-4.1512	-0.0033014	-5.1332	-0.0040824	795.2913734945629	127.68	0.25424	127.94	127.71	127.97	0.26593					6	4	2	0	0	0	0.972	1	49996	49996		2.5775	1.976	1	7521200			2060	1940	1318	1334	2043	2043					-0.12139150079963201
AGSHYFKCPF	10	Unmodified	_AGSHYFKCPF_					0	0	0			REV__ENSG00000188177|ENST00000409871|ZC3H6	REV__ENSG00000188177|ENST00000409871|ZC3H6	MULTI-SECPEP	A375_MHC_IP_R1	1	579.263671875	2	578.765852	1155.51715	-0.40214	-0.00023275	2.3579	0.0013647	1.9558	0.0011319	578.7674800007125	66.583	0.40768	66.583	66.326	66.734	0					11	7	2	0	0	0	0.93194	1	24016	24016		2.9952	1.151	1	1358800	+		2061	22076	1319	1335	2044	2044					-0.05438770088653655
AGSLCALS	8	Unmodified	_AGSLCALS_					0	0	0		ENSG00000003989|ENST00000494857|SLC7A2;nc|ENSG00000003989|P52569-2|SLC7A2;nc|ENSG00000003989|P52569-3|SLC7A2	ENSG00000003989|ENST00000494857|SLC7A2	ENSG00000003989|ENST00000494857|SLC7A2	MULTI-SECPEP	A375_MHC_IP_R1	1	721.75634765625	1	721.354902	720.347625	-0.54005	-0.00038957	3.0669	0.0022123	2.5269	0.0018228	721.3571865480297	103.71	0.25376	103.71	103.57	103.83	0					6	4	2	0	0	0	0.90224	1	38112	38112		19.439	0	1	1012300			2062	862	1320	1336	2045	2045					-0.02373466371216182
AGSPEWTDADP	11	Unmodified	_AGSPEWTDADP_					0	0	0		ENST00000583454.1_1_17:73512940-73513526:+|nuORF	ENST00000583454.1_1_17:73512940-73513526:+|nuORF	ENST00000583454.1_1_17:73512940-73513526:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	572.6163330078125	2	573.240918	1144.46728	-0.41138	-0.00023582	0.059463	3.4086E-05	-0.35192	-0.00020173	573.2413178126883	27.062	0.65405	27.062	26.828	27.482	0					31	12	4	0	0	0	0.92455	1	8078	8078		16.149	0	1	15687000			2063	13696	1321	1337	2046	2046					-0.0991722628361913
AGSPTRPNYR	10	Unmodified	_AGSPTRPNYR_					0	0	0		ENST00000493195.5_1_1:159902482-159902782:-|nuORF	ENST00000493195.5_1_1:159902482-159902782:-|nuORF	ENST00000493195.5_1_1:159902482-159902782:-|nuORF	MSMS	A375_MHC_IP_R2	2	559.6682739257812	2	559.788704	1117.56285	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.982	1	19.585	19.085	20.085	0.60308								0	0	0	0.15372	1	5736	5736		8.7454	0.58988	1				2064	12679	1322	1338	2047	2047					0.008775914179295796
AGSQCMEAHL	10	Unmodified	_AGSQCMEAHL_					0	0	0			REV__ENST00000574767.5_1_17:78727982-78796039:+|nuORF	REV__ENST00000574767.5_1_17:78727982-78796039:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	523.6689453125	2	523.723326	1045.4321	-0.70344	-0.00036841	1.8269	0.00095679	1.1235	0.00058838	524.2259861686161	66.739	1.1703	66.739	65.819	66.99	0					34	22	2	0	0	0	0.69306	1	24065	24065		13.906	0.39817	1	1599400	+		2065	26301	1323	1339	2048	2048					-0.08879883616782536
AGSQEHDP	8	Unmodified	_AGSQEHDP_					0	0	0		AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;ENSG00000131016|ENST00000402676|AKAP12	AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant	AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	840.4620971679688	1	840.348236	839.34096	-0.9376	-0.00078791	0.014492	1.2178E-05	-0.92311	-0.00077573	840.3524980832609	123.77	0.30265	123.77	123.54	123.84	0					7	5	2	0	0	0	0.972	1	46357	46357		2.3027	0	1	9366200			2066	97	1324	1340	2049	2049					-0.0851368799823149
AGSSDTFSRIC	11	Unmodified	_AGSSDTFSRIC_					0	0	0			REV__nc|ENSG00000176845|Q641Q3-2|METRNL	REV__nc|ENSG00000176845|Q641Q3-2|METRNL	MULTI-SECPEP	A375_MHC_IP_R1	1	572.134521484375	2	572.258588	1142.50262	-0.23484	-0.00013439	2.9557	0.0016914	2.7209	0.0015571	572.2608161164128	33.938	0.3547	33.938	33.748	34.103	0					9	6	2	0	0	0	0.95991	1	11157	11157		8.7454	0	1	2245300	+		2067	21421	1325	1341	2050	2050					-0.06292887027416327
AGSSVLREL	9	Unmodified	_AGSSVLREL_					0	0	0		ENSG00000198841|ENST00000371614|KTI12	ENSG00000198841|ENST00000371614|KTI12	ENSG00000198841|ENST00000371614|KTI12	MULTI-MSMS	A375_MHC_IP_R1	1	466.6639404296875	2	466.263999	930.513445	-0.1535	-7.1571E-05	-0.093874	-4.377E-05	-0.24737	-0.00011534	466.263964241542	51.156	0.55908	51.156	50.966	51.525	0					16	10	2	0	0	0	0.068071	1	18201	18201		57.249	15.409	1	2478300			2068	9345	1326	1342	2051	2051					0.04540883409140406
AGSSVLREL	9	Unmodified	_AGSSVLREL_					0	0	0		ENSG00000198841|ENST00000371614|KTI12	ENSG00000198841|ENST00000371614|KTI12	ENSG00000198841|ENST00000371614|KTI12	MULTI-MATCH	A375_MHC_IP_R2	2		2	466.263999	930.513445	-0.82847	-0.00038628	0.43164	0.00020126	-0.39683	-0.00018503	466.2642270171023	50.293	0.55774	51.047	50.804	51.361	0.75406	-0.054865	0.00030322	NaN	57.249	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2946500			2069	9345	1326	1342							0.04540883409140406
AGSVPPTH	8	Unmodified	_AGSVPPTH_					0	0	0			REV__nc|ENSG00000071564|P15923-2|TCF3	REV__nc|ENSG00000071564|P15923-2|TCF3	MULTI-MSMS	A375_MHC_IP_R2	2	767.4957275390625	1	765.388979	764.381703	-0.80475	-0.00061595	-1.7503	-0.0013397	-2.555	-0.0019556	765.391897913235	117.86	0.15255	118.47	118.34	118.49	0.60909					6	2	3	0	0	0	0.77488	1	44592	44592		13.508	3.3245	1	55354000	+		2070	16589	1327	1343	2052	2052					-0.009913018879615265
AGTFISGY	8	Unmodified	_AGTFISGY_					0	0	0			REV__nc|ENSG00000292372|Q9NQA3|WASH6P;REV__nc|ENSG00000185596|C4AMC7|WASH3P	REV__nc|ENSG00000185596|C4AMC7|WASH3P	MULTI-SECPEP	A375_MHC_IP_R2	2	407.9591064453125	2	408.200336	814.386119	0.21767	8.8855E-05	-0.3855	-0.00015736	-0.16782	-6.8506E-05	408.2001338811953	43.821	0.55415	44.59	44.278	44.833	0.76909					16	10	2	0	0	0	0.90224	1	16319	16319		13.508	0	1	1090900	+		2071	21694;27414	1328	1344	2053	2053					-0.02849837465055316
AGTFRDLRL	9	Unmodified	_AGTFRDLRL_					0	0	0		ENSG00000173080|ENST00000368318|RXFP4	ENSG00000173080|ENST00000368318|RXFP4	ENSG00000173080|ENST00000368318|RXFP4	MULTI-SECPEP	A375_MHC_IP_R2	2	524.6767578125	2	524.79854	1047.58253	-0.6769	-0.00035524	-0.0044156	-2.3173E-06	-0.68132	-0.00035756	524.798418033123	35.812	0.61259	36.576	36.333	36.946	0.76338					20	11	3	0	0	0	0.60012	1	13135	13135		7.9102	0	1	5623900			2072	7765	1329	1345	2054	2054					0.060639674286903755
AGTQWLVFF	9	Unmodified	_AGTQWLVFF_					0	0	0			REV__nc|ENSG00000180354|Q8N3F0-2|MTURN	REV__nc|ENSG00000180354|Q8N3F0-2|MTURN	MULTI-SECPEP	A375_MHC_IP_R1	1	535.177490234375	2	534.779285	1067.54402	-0.84999	-0.00045456	-1.1809	-0.00063152	-2.0309	-0.0010861	534.7781374644057	66.057	0.86354	66.057	65.717	66.58	0					39	16	3	0	0	0	0.3213	1	23883	23883		24.021	0	1	5534500	+		2073	27386	1330	1346	2055	2055					0.012946617941679506
AGTQWLVFF	9	Unmodified	_AGTQWLVFF_					0	0	0			REV__nc|ENSG00000180354|Q8N3F0-2|MTURN	REV__nc|ENSG00000180354|Q8N3F0-2|MTURN	MULTI-SECPEP	A375_MHC_IP_R2	2	535.1764526367188	2	534.779285	1067.54402	-0.86732	-0.00046382	-1.8282	-0.00097766	-2.6955	-0.0014415	534.778144942801	65.06	1.0646	65.798	65.41	66.475	0.73812					35	19	3	0	0	0	0.1277	1	24639	24639		37.974	0	1	5759000	+		2074	27386	1330	1346	2056	2056					0.012946617941679506
AGTVLQRLI	9	Unmodified	_AGTVLQRLI_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	MULTI-SECPEP	A375_MHC_IP_R1	1	486.14495849609375	2	485.805834	969.597115	-0.4842	-0.00023523	-0.38968	-0.00018931	-0.87388	-0.00042454	485.8058427258511	41.205	0.40451	41.205	40.963	41.368	0					11	7	2	0	0	0	0.69504	1	14198	14198		12.532	8.9351	1	1298800			2075	7019	1331	1347	2057	2057					0.11110039576851705
AGVANALAHK	10	Unmodified	_AGVANALAHK_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-SECPEP	A375_MHC_IP_R2	2	476.32794189453125	2	476.272158	950.529764	-0.78637	-0.00037453	0.275	0.00013098	-0.51137	-0.00024355	476.2722739716831	33.265	0.61064	34.017	33.737	34.348	0.75225					21	11	3	0	0	0	0.021795	1	11874	11874		103.35	67.226	1	8311900			2076	9826	1332	1348	2058	2058					0.052520093658813494
AGVIKRTE	8	Unmodified	_AGVIKRTE_					0	0	0			REV__PXDN|p.D1187Efs*3|1|0.08|ENSG00000130508|chr2:1648215-1648219|TCAGG/-|frameshift_variant	REV__PXDN|p.D1187Efs*3|1|0.08|ENSG00000130508|chr2:1648215-1648219|TCAGG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	873.227783203125	1	873.515242	872.507966	-0.056969	-4.9763E-05	-2.6239	-0.002292	-2.6809	-0.0023418	873.5110593145951	109.37	0.86347	109.37	108.76	109.63	0					21	16	2	0	0	0	0.972	1	39927	39927		2.8892	0.31174	1	2786600	+		2077	18543	1333	1349	2059	2059					0.0666120461733044
AGVLKHLQ	8	Unmodified	_AGVLKHLQ_					0	0	0		nc|ENSG00000160882|P15538-2|CYP11B1	nc|ENSG00000160882|P15538-2|CYP11B1	nc|ENSG00000160882|P15538-2|CYP11B1	MULTI-MSMS	A375_MHC_IP_R1	1	433.6661376953125	2	433.266345	864.518136	-0.30621	-0.00013267	0.073507	3.1848E-05	-0.2327	-0.00010082	433.2663569703437	27.658	0.85706	27.658	27.381	28.238	0					44	16	4	0	0	0	0.28913	2	8389	8389;8473		59.795	27.678	1	75250000			2078	14714	1334	1350	2060;2061	2060					0.08045812342561476
AGVLKHLQ	8	Unmodified	_AGVLKHLQ_					0	0	0		nc|ENSG00000160882|P15538-2|CYP11B1	nc|ENSG00000160882|P15538-2|CYP11B1	nc|ENSG00000160882|P15538-2|CYP11B1	MULTI-MSMS	A375_MHC_IP_R2	2	433.666259765625	2	433.266345	864.518136	-0.32658	-0.00014149	0.15601	6.7593E-05	-0.17057	-7.3902E-05	433.26635988956644	27.041	0.8669	27.719	27.484	28.351	0.67857					41	16	4	0	0	0	0.28913	1	9177	9177		59.795	19.347	1	66362000			2079	14714	1334	1350	2062	2062					0.08045812342561476
AGVMNKLCL	9	Unmodified	_AGVMNKLCL_					0	0	0			REV__ENST00000467080.1_1_10:6155999-6157276:+|nuORF	REV__ENST00000467080.1_1_10:6155999-6157276:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	949.2146606445312	1	948.50052	947.493244	0.48855	0.00046339	1.3611	0.001291	1.8496	0.0017544	948.501406272944	126.92	0.20225	126.92	126.76	126.96	0					5	3	2	0	0	0	0.67221	1	48489	48489		8.5933	0	1	10190000	+		2080	25051	1335	1351	2063	2063					0.017396731533153797
AGVRCWEPGP	10	Unmodified	_AGVRCWEPGP_					0	0	0		ENSG00000214279|ENST00000640237|SCART1	ENSG00000214279|ENST00000640237|SCART1	ENSG00000214279|ENST00000640237|SCART1	MULTI-MSMS	A375_MHC_IP_R2	2	358.2389831542969	3	357.839526	1070.49675	-0.032304	-1.156E-05	-0.90641	-0.00032435	-0.93872	-0.00033591	357.8391123529652	85.81	0.60942	86.546	86.29	86.899	0.73601					17	11	2	0	0	0	0.59108	1	32634	32634		14.218	14.218	1	2631400			2081	9611	1336	1352	2064	2064					-0.03567940748462206
AGVRCWEPGP	10	Unmodified	_AGVRCWEPGP_					0	0	0		ENSG00000214279|ENST00000640237|SCART1	ENSG00000214279|ENST00000640237|SCART1	ENSG00000214279|ENST00000640237|SCART1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	357.839526	1070.49675	-0.11915	-4.2636E-05	-0.83902	-0.00030023	-0.95817	-0.00034287	357.8391596034083	86.579	0.60725	86.579	86.325	86.933	0	0.016352	1.9351E-05	NaN	14.218	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2826700			2082	9611	1336	1352							-0.03567940748462206
AGVRKSLRHR	10	Unmodified	_AGVRKSLRHR_					0	0	0			REV__ENST00000478666.5_1_3:75471877-75472048:-|nuORF	REV__ENST00000478666.5_1_3:75471877-75472048:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	590.1770629882812	2	590.362705	1178.71086	-0.36019	-0.00021264	-1.5821	-0.00093399	-1.9423	-0.0011466	590.3627907029658	114.12	0.50317	114.83	114.63	115.14	0.70985					12	9	2	0	0	0	0.93615	1	43008	43008		7.2892	4.0079	1	1828800	+		2083	25054	1337	1353	2065	2065					0.12864947462458076
AGVSESRIY	9	Unmodified	_AGVSESRIY_					0	0	0		nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5;nc|ENSG00000134532|P35711-3|SOX5;nc|ENSG00000134532|P35711-4|SOX5	nc|ENSG00000134532|P35711-2|SOX5	nc|ENSG00000134532|P35711-2|SOX5	MULTI-SECPEP	A375_MHC_IP_R1	1	491.65350341796875	2	491.253631	980.49271	-0.44581	-0.00021901	-0.29719	-0.00014599	-0.743	-0.000365	491.2533872548464	31.043	0.75909	31.043	30.857	31.616	0					33	14	3	0	0	0	0.056023	1	9909	9909		85.642	26.963	1	14541000			2084	4585	1338	1354	2066	2066					0.001682930294578
AGVSESRIY	9	Unmodified	_AGVSESRIY_					0	0	0		nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5;nc|ENSG00000134532|P35711-3|SOX5;nc|ENSG00000134532|P35711-4|SOX5	nc|ENSG00000134532|P35711-2|SOX5	nc|ENSG00000134532|P35711-2|SOX5	MULTI-SECPEP	A375_MHC_IP_R2	2	491.6533508300781	2	491.253631	980.49271	-0.54578	-0.00026812	-0.40234	-0.00019765	-0.94812	-0.00046577	491.25336063598814	30.433	0.65602	31.151	30.911	31.567	0.71857					33	12	3	0	0	0	0.013591	1	10675	10675		96.367	46.434	1	13290000			2085	4585	1338	1354	2067	2067					0.001682930294578
AGVVLPQVQ	9	Unmodified	_AGVVLPQVQ_					0	0	0		nc|ENSG00000273345|Q8IVW4-2|CDKL3;ENSG00000006837|ENST00000265334|CDKL3;ENST00000520515.5_1_5:133541561-133657575:-|nuORF	nc|ENSG00000273345|Q8IVW4-2|CDKL3	nc|ENSG00000273345|Q8IVW4-2|CDKL3	MULTI-SECPEP	A375_MHC_IP_R1	1	456.1712951660156	2	455.77146	909.528367	-0.39768	-0.00018125	0.14473	6.5963E-05	-0.25295	-0.00011529	455.77145723264243	31.027	0.86095	31.027	30.653	31.514	0					34	16	3	0	0	0	0.12259	1	9876	9876		44.407	0	1	5799600			2086	933	1339	1355	2068	2068					0.06998375277134983
AGVVLPQVQ	9	Unmodified	_AGVVLPQVQ_					0	0	0		nc|ENSG00000273345|Q8IVW4-2|CDKL3;ENSG00000006837|ENST00000265334|CDKL3;ENST00000520515.5_1_5:133541561-133657575:-|nuORF	nc|ENSG00000273345|Q8IVW4-2|CDKL3	nc|ENSG00000273345|Q8IVW4-2|CDKL3	MULTI-SECPEP	A375_MHC_IP_R2	2	456.171142578125	2	455.77146	909.528367	-0.24405	-0.00011123	-0.37701	-0.00017183	-0.62106	-0.00028306	455.77124766642675	30.404	0.91054	31.123	30.708	31.618	0.71857					27	17	2	0	0	0	0.12259	1	10648	10648		53.576	0	1	6036600			2087	933	1339	1355	2069	2069					0.06998375277134983
AGVVNFFV	8	Unmodified	_AGVVNFFV_					0	0	0		tr|U7SM82|U7SM82_FUSNUShort-chainfattyacidstransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01859PE=4SV=1	tr|U7SM82|U7SM82_FUSNUShort-chainfattyacidstransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01859PE=4SV=1	tr|U7SM82|U7SM82_FUSNUShort-chainfattyacidstransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01859PE=4SV=1	MSMS	A375_MHC_IP_R2	2	426.6707458496094	2	426.734346	851.454139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.249	1	35.002	34.502	35.502	0.75225								0	0	0	0.16876	1	12334	12334		20.871	1.4322	1				2088	29522	1340	1356	2070	2070					0.022470321856076225
AGWGDVGCCDY	11	Unmodified	_AGWGDVGCCDY_					0	0	0			REV__ENSG00000174004|ENST00000328557|NRROS	REV__ENSG00000174004|ENST00000328557|NRROS	MULTI-SECPEP	A375_MHC_IP_R2	2	573.6038818359375	2	573.204967	1144.39538	-0.33059	-0.0001895	-0.73113	-0.00041909	-1.0617	-0.00060858	573.2042460368642	72.632	0.55947	73.368	73.175	73.734	0.73541					17	10	2	0	0	0	0.99606	1	27655	27655		1.3295	0	1	1746900	+		2089	21258	1341	1357	2071	2071					-0.17104180233332045
AGWSNKLIWYP	11	Unmodified	_AGWSNKLIWYP_					0	0	0			REV__ENSG00000172543|ENST00000307886|CTSW	REV__ENSG00000172543|ENST00000307886|CTSW	MULTI-MSMS	A375_MHC_IP_R1	1	445.62957763671875	3	445.567912	1333.68191	-0.088698	-3.9521E-05	-0.039541	-1.7618E-05	-0.12824	-5.7139E-05	445.5680728954257	40.838	0.30109	40.838	40.712	41.013	0					8	5	2	0	0	0	0.73781	1	14123	14123		1.4551	0.24029	1	1033100	+		2090	21154	1342	1358	2072	2072					0.028413653227971736
AGWSNKLIWYP	11	Unmodified	_AGWSNKLIWYP_					0	0	0			REV__ENSG00000172543|ENST00000307886|CTSW	REV__ENSG00000172543|ENST00000307886|CTSW	MULTI-MATCH	A375_MHC_IP_R2	2		3	445.567912	1333.68191	-0.4293	-0.00019128	0.32481	0.00014473	-0.10449	-4.6556E-05	445.5681573046743	40.103	0.25341	40.877	40.727	40.98	0.77451	0.019783	0.00018299	NaN	1.4551	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	811050	+		2091	21154	1342	1358							0.028413653227971736
AGWTPWRP	8	Unmodified	_AGWTPWRP_					0	0	0			REV__ENST00000471359.1_1_20:25274588-25274768:+|nuORF	REV__ENST00000471359.1_1_20:25274588-25274768:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	484.968017578125	2	485.748319	969.482085	-0.86672	-0.00042101	3.0534	0.0014832	2.1867	0.0010622	485.74994278232066	18.855	0.1105	19.458	19.423	19.533	0.60308					5	3	2	0	0	0	0.972	1	5646	5646		5.7604	0	1	23009000	+		2092	25118	1343	1359	2073	2073					-0.003876448342907679
AGYDHTVRFW	10	Unmodified	_AGYDHTVRFW_					0	0	0		ENST00000565330.5_1_16:2256050-2256424:+|nuORF;ENST00000568542.5_1_16:2255373-2256424:+|nuORF;ENST00000564294.5_1_16:2256050-2256778:+|nuORF;nc|ENSG00000167965|Q9BVC4-4|MLST8;ENST00000563067.5_1_16:2256050-2258447:+|nuORF;nc|ENSG00000167965|Q9BVC4-5|MLST8;ENSG00000167965|ENST00000569417|MLST8	ENST00000565330.5_1_16:2256050-2256424:+|nuORF	ENST00000565330.5_1_16:2256050-2256424:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	418.6087951660156	3	417.868362	1250.58326	0.1906	7.9644E-05	-0.43454	-0.00018158	-0.24395	-0.00010194	417.86839460133706	63.947	0.4058	63.947	63.735	64.141	0					11	7	2	0	0	0	0.84881	1	23146	23146		19.987	13.363	1	701920			2093	7241	1344	1360	2074	2074					-0.0320123792225786
AGYDHTVRFW	10	Unmodified	_AGYDHTVRFW_					0	0	0		ENST00000565330.5_1_16:2256050-2256424:+|nuORF;ENST00000568542.5_1_16:2255373-2256424:+|nuORF;ENST00000564294.5_1_16:2256050-2256778:+|nuORF;nc|ENSG00000167965|Q9BVC4-4|MLST8;ENST00000563067.5_1_16:2256050-2258447:+|nuORF;nc|ENSG00000167965|Q9BVC4-5|MLST8;ENSG00000167965|ENST00000569417|MLST8	ENST00000565330.5_1_16:2256050-2256424:+|nuORF	ENST00000565330.5_1_16:2256050-2256424:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	417.868362	1250.58326	-0.0044927	-1.8773E-06	-0.94266	-0.00039391	-0.94715	-0.00039579	417.86808732605834	63.222	0.35538	63.964	63.685	64.04	0.74263	0.0086381	-0.00032355	NaN	35.08	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1124200			2094	7241	1344	1360							-0.0320123792225786
AGYDVHWY	8	Unmodified	_AGYDVHWY_					0	0	0		nc|ENSG00000211653|P01703|IGLV1-40	nc|ENSG00000211653|P01703|IGLV1-40	nc|ENSG00000211653|P01703|IGLV1-40	MSMS	A375_MHC_IP_R1	1	505.7049255371094	2	505.721967	1009.42938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.671	1	99.671	99.171	100.17	0								0	0	0	0.16876	1	36617	36617		5.7604	0.028577	1				2095	14872	1345	1361	2075	2075					-0.0749564768776736
AGYDVPTI	8	Unmodified	_AGYDVPTI_					0	0	0		CASKIN2|p.P971Afs*141|1|0.82|ENSG00000177303|chr17:75502139-75502163|CGGGGGGCACGGGTGTCTCTCGGGG/-|frameshift_variant;nc|ENSG00000177303|Q8WXE0-2|CASKIN2;ENSG00000177303|ENST00000321617|CASKIN2;ENST00000580021.1_1_17:73499628-73500004:-|nuORF	CASKIN2|p.P971Afs*141|1|0.82|ENSG00000177303|chr17:75502139-75502163|CGGGGGGCACGGGTGTCTCTCGGGG/-|frameshift_variant	CASKIN2|p.P971Afs*141|1|0.82|ENSG00000177303|chr17:75502139-75502163|CGGGGGGCACGGGTGTCTCTCGGGG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	835.4683227539062	1	835.41961	834.412334	-0.74396	-0.00062152	-0.11074	-9.2514E-05	-0.8547	-0.00071403	835.4194068306142	80.19	0.50607	80.935	80.708	81.214	0.74474					13	9	2	0	0	0	0.76248	1	30377	30377		16.942	3.4344	1	3393600			2096	292	1346	1362	2076	2076					-0.011495682935674267
AGYNCGDC	8	Unmodified	_AGYNCGDC_					0	0	0		ENST00000472871.1_1_13:95120883-95131509:-|nuORF;ENSG00000080166|ENST00000377028|DCT;nc|ENSG00000080166|P40126-2|DCT;chr13:94452662-94460091|388|60.69|0.09|9.36|-|ENST00000446125|DCT,DCT;chr13:94445761-94452607|358|29.59|0.04|9.64|-|ENST00000446125|DCT,DCT;chr13:94443637-94445719|398|75.55|0.07|9.99|-|ENST00000446125|DCT,DCT	ENST00000472871.1_1_13:95120883-95131509:-|nuORF	ENST00000472871.1_1_13:95120883-95131509:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	802.0978393554688	1	802.24945	801.242174	-0.80557	-0.00064627	-3.8256	-0.0030691	-4.6312	-0.0037154	802.2504999008962	124.35	0.20234	124.35	124.19	124.39	0					5	3	2	0	0	0	0.972	1	46746	46746		0	0	1	11564000			2097	427	1347	1363	2077	2077					-0.16639750559147615
AGYPHIRYI	9	Unmodified	_AGYPHIRYI_					0	0	0		ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111	ENSG00000157450|ENST00000348370|RNF111	ENSG00000157450|ENST00000348370|RNF111	MULTI-SECPEP	A375_MHC_IP_R1	1	364.26605224609375	3	363.866181	1088.57671	0.63245	0.00023013	-0.54303	-0.00019759	0.089424	3.2538E-05	363.86592786832466	48.68	0.75861	48.68	48.325	49.084	0					28	14	3	0	0	0	0.71541	1	17185	17185		4.5289	2.7866	1	3615900			2098	6245	1348	1364	2078	2078					0.03596868917043139
AHCNYFQNPS	10	Unmodified	_AHCNYFQNPS_					0	0	0		ENSG00000176160|ENST00000323777|HSF5;nc|ENSG00000176160|Q4G112-2|HSF5	ENSG00000176160|ENST00000323777|HSF5	ENSG00000176160|ENST00000323777|HSF5	MULTI-MSMS	A375_MHC_IP_R2	2	590.7217407226562	2	590.745647	1179.47674	-0.61133	-0.00036114	-0.93012	-0.00054946	-1.5414	-0.0009106	590.7450628769905	72.82	0.45707	73.556	73.379	73.836	0.73541					11	8	2	0	0	0	0.71466	1	27623	27623		5.7319	0.43497	1	1727000			2099	8006	1349	1365	2079	2079					-0.10581736479070969
AHCNYFQNPS	10	Unmodified	_AHCNYFQNPS_					0	0	0		ENSG00000176160|ENST00000323777|HSF5;nc|ENSG00000176160|Q4G112-2|HSF5	ENSG00000176160|ENST00000323777|HSF5	ENSG00000176160|ENST00000323777|HSF5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	590.745647	1179.47674	-0.32874	-0.0001942	-0.31784	-0.00018776	-0.64657	-0.00038196	590.7451127730781	73.379	0.45741	73.379	73.132	73.589	0	-0.088306	0.00056401	NaN	5.7319	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1655600			2100	8006	1349	1365							-0.10581736479070969
AHCNYFQNPS	10	Unmodified	_AHCNYFQNPS_					0	0	0		ENSG00000176160|ENST00000323777|HSF5;nc|ENSG00000176160|Q4G112-2|HSF5	ENSG00000176160|ENST00000323777|HSF5	ENSG00000176160|ENST00000323777|HSF5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	590.745647	1179.47674	-0.61133	-0.00036114	-0.93012	-0.00054946	-1.5414	-0.0009106	590.7450628769905	72.82	0.45707	73.556	73.379	73.836	0.73541	0.088306	-0.0001594	NaN	5.7319	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1727000			2101	8006	1349	1365							-0.10581736479070969
AHCTIPEL	8	Unmodified	_AHCTIPEL_					0	0	0			REV__ENSG00000241685|ENST00000262942|ARPC1A	REV__ENSG00000241685|ENST00000262942|ARPC1A	MSMS	A375_MHC_IP_R2	2	442.1864929199219	2	442.220746	882.426938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.914	1	84.653	84.153	85.153	0.73962								0	0	0	0.16876	1	31896	31896		19.439	10.092	1		+		2102	22789	1350	1366	2080	2080					-0.018978194170813367
AHDINFNDD	9	Unmodified	_AHDINFNDD_					0	0	0			REV__ENSG00000177575|ENST00000432237|CD163	REV__ENSG00000177575|ENST00000432237|CD163	MULTI-MSMS	A375_MHC_IP_R1	1	531.6650390625	2	530.720153	1059.42575	-0.66649	-0.00035372	-2.129	-0.0011299	-2.7955	-0.0014836	531.2212047513452	87.312	0.81334	87.312	86.831	87.644	0					30	15	3	0	0	0	0.61998	1	32063	32063		13.906	0.39817	1	1972300	+		2103	21463	1351	1367	2081	2081					-0.10158362252286679
AHESVVKSEDF	11	Unmodified	_AHESVVKSEDF_					0	0	0		ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	MULTI-MSMS	A375_MHC_IP_R1	1	417.2690734863281	3	416.534937	1246.58298	-0.041404	-1.7246E-05	0.34055	0.00014185	0.29915	0.00012461	416.5348416226992	26.711	0.65472	26.711	26.373	27.027	0					32	12	4	0	0	0	0.022115	1	8034	8034		86.276	74.645	1	7525300			2104	4311	1352	1368	2082	2082					-0.03044702432748636
AHESVVKSEDF	11	Unmodified	_AHESVVKSEDF_					0	0	0		ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	MULTI-MSMS	A375_MHC_IP_R1	1	624.6982421875	2	624.298767	1246.58298	-0.79799	-0.00049819	0.16478	0.00010287	-0.63321	-0.00039532	624.2988990152337	26.754	0.40165	26.754	26.626	27.027	0					18	7	3	0	0	0	0.00089986	1	8035	8035		132.57	114.42	1	5906700			2105	4311	1352	1368	2083	2083					-0.03044702432748636
AHESVVKSEDF	11	Unmodified	_AHESVVKSEDF_					0	0	0		ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	MULTI-MSMS	A375_MHC_IP_R2	2	624.6986083984375	2	624.298767	1246.58298	-1.1856	-0.00074014	0.33405	0.00020855	-0.85151	-0.0005316	624.2990164543485	26.171	0.40521	26.831	26.653	27.058	0.65992					17	7	3	0	0	0	0.00024133	1	8826	8826		150.18	128.64	1	6405000			2106	4311	1352	1368	2084	2084					-0.03044702432748636
AHESVVKSEDF	11	Unmodified	_AHESVVKSEDF_					0	0	0		ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	MULTI-MSMS	A375_MHC_IP_R2	2	416.9349365234375	3	416.534937	1246.58298	-0.4483	-0.00018673	1.1338	0.00047226	0.68547	0.00028552	416.53491178282593	26.157	0.71202	26.817	26.449	27.161	0.65992					32	13	4	0	0	0	0.0023491	1	8827	8827		97.284	77.297	1	11388000			2107	4311	1352	1368	2085	2085					-0.03044702432748636
AHFRGQIYW	9	Unmodified	_AHFRGQIYW_					0	0	0		ENST00000527144.5_1_8:145138126-145139470:+|nuORF;nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1	ENST00000527144.5_1_8:145138126-145139470:+|nuORF	ENST00000527144.5_1_8:145138126-145139470:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	392.6280517578125	3	393.201564	1176.58286	-0.099829	-3.9253E-05	0.71487	0.00028109	0.61504	0.00024184	393.20178435457785	52.863	0.60759	52.863	52.541	53.148	0					22	11	3	0	0	0	0.73008	1	18795	18795		12.241	0	1	1567000			2108	9200	1353	1369	2086	2086					0.0016338714854100544
AHGVSLVLEP	10	Unmodified	_AHGVSLVLEP_					0	0	0		ENST00000588598.5_1_19:1881968-1882184:-|nuORF	ENST00000588598.5_1_19:1881968-1882184:-|nuORF	ENST00000588598.5_1_19:1881968-1882184:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	511.68701171875	2	511.287474	1020.5604	-0.63873	-0.00032657	0.097273	4.9734E-05	-0.54146	-0.00027684	511.28746661167503	68.36	0.9631	69.095	68.765	69.728	0.73511					38	18	3	0	0	0	0.87163	1	25861	25861		19.257	1.1106	1	9205700			2109	13766	1354	1370	2087	2087					0.05093742960286818
AHHVPRNGAP	10	Unmodified	_AHHVPRNGAP_					0	0	0			REV__ENST00000361171.7_1_9:129089216-129102806:+|nuORF	REV__ENST00000361171.7_1_9:129089216-129102806:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	352.36968994140625	3	352.521296	1054.54206	-0.49182	-0.00017338	-1.1852	-0.00041781	-1.677	-0.00059119	352.520843268951	24.036	0.40738	24.679	24.55	24.958	0.64368					12	7	2	0	0	0	0.93615	1	7844	7844		1.9064	0	1	3187800	+		2110	23902	1355	1371	2088	2088					0.016970458289279122
AHKALCIL	8	Unmodified	_AHKALCIL_					0	0	0		nc|ENSG00000114026|O15527-8|OGG1;nc|ENSG00000114026|O15527-2|OGG1;ENSG00000114026|ENST00000344629|OGG1;nc|ENSG00000114026|O15527-7|OGG1;nc|ENSG00000114026|O15527-5|OGG1;nc|ENSG00000114026|O15527-3|OGG1;nc|ENSG00000114026|O15527-4|OGG1	nc|ENSG00000114026|O15527-8|OGG1	nc|ENSG00000114026|O15527-8|OGG1	MULTI-MSMS	A375_MHC_IP_R1	1	435.16595458984375	2	434.757298	867.500044	-0.57306	-0.00024914	-2.1751	-0.00094565	-2.7482	-0.0011948	434.756177271681	67.905	0.35427	67.905	67.804	68.159	0					9	6	2	0	0	0	0.77123	1	24596	24596		14.582	1.0738	1	442290			2111	3192	1356	1372	2089	2089					0.0609935409619311
AHLFTRRW	8	Unmodified	_AHLFTRRW_					0	0	0			REV__nc|ENSG00000124508|Q8WVV5-3|BTN2A2	REV__nc|ENSG00000124508|Q8WVV5-3|BTN2A2	MULTI-SECPEP	A375_MHC_IP_R2	2	362.54290771484375	3	362.870037	1085.58828	-0.44837	-0.0001627	-1.9826	-0.00071942	-2.431	-0.00088212	362.86956870051563	60.082	0.30223	60.829	60.603	60.906	0.74714					7	5	2	0	0	0	0.972	1	22716	22716		1.8442	0	1	903630	+		2112	18310	1357	1373	2090	2090					0.048911107310459556
AHLIAHQSL	9	Unmodified	_AHLIAHQSL_					0	0	0		ENSG00000085644|ENST00000396878|ZNF213;nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF	ENSG00000085644|ENST00000396878|ZNF213	ENSG00000085644|ENST00000396878|ZNF213	MULTI-SECPEP	A375_MHC_IP_R2	2	495.65594482421875	2	495.279983	988.545414	-0.60762	-0.00030094	0.63444	0.00031422	0.026818	1.3283E-05	495.2798272663493	33.059	0.76342	33.81	33.432	34.195	0.75142					23	14	3	0	0	0	0.58271	1	11978	11978		20.454	3.3671	1	2287500			2113	1816	1358	1374	2091	2091					0.050682958829384006
AHLMVVSL	8	Unmodified	_AHLMVVSL_					0	0	0		nc|ENSG00000204700|O76002|OR2J2;ENSG00000204702|ENST00000641659|OR2J1;ENSG00000204700|ENST00000641417|OR2J2	nc|ENSG00000204700|O76002|OR2J2	nc|ENSG00000204700|O76002|OR2J2	MSMS	A375_MHC_IP_R1	1	435.2823181152344	2	435.249306	868.484059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.265	1	67.265	66.765	67.765	0								0	0	0	0.16876	1	24373	24373		9.3474	3.587	1				2114	9474	1359	1375	2092	2092					0.04455647859299461
AHMYPTEWREM	11	Unmodified	_AHMYPTEWREM_					0	0	0			REV__ENSG00000130005|ENST00000252288|GAMT	REV__ENSG00000130005|ENST00000252288|GAMT	MULTI-SECPEP	A375_MHC_IP_R2	2	484.6762390136719	3	484.212923	1449.61694	-0.68538	-0.00033187	-0.49174	-0.00023811	-1.1771	-0.00056998	484.21286790531093	55.38	0.60836	56.131	55.881	56.489	0.75075					34	11	4	0	0	0	0.99548	1	20897	20897		8.7518	2.1283	1	13048000	+		2115	18514	1360	1376	2093	2093					-0.08988320537059735
AHPFDQIYY	9	Unmodified	_AHPFDQIYY_					0	0	0		MEGF11|p.S41W|1|0.32|ENSG00000157890|chr15:66123977-66123977|G/C|missense_variant;nc|ENSG00000157890|A6BM72-3|MEGF11;nc|ENSG00000157890|A6BM72|MEGF11;ENSG00000157890|ENST00000395614|MEGF11	MEGF11|p.S41W|1|0.32|ENSG00000157890|chr15:66123977-66123977|G/C|missense_variant	MEGF11|p.S41W|1|0.32|ENSG00000157890|chr15:66123977-66123977|G/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	577.669189453125	2	577.269281	1152.52401	-0.12798	-7.3879E-05	-0.65888	-0.00038035	-0.78686	-0.00045423	577.2689872854328	78.421	1.3708	79.166	78.828	80.199	0.74474					79	26	6	0	0	0	0.27715	1	29925	29925		32.305	0	1	55878000			2116	6275	1361	1377	2094	2094					-0.046151339364541855
AHPLCTGAVEV	11	Unmodified	_AHPLCTGAVEV_					0	0	0			REV__ENSG00000146904|ENST00000275815|EPHA1	REV__ENSG00000146904|ENST00000275815|EPHA1	MULTI-SECPEP	A375_MHC_IP_R1	1	549.1787719726562	2	548.776416	1095.53828	-0.4893	-0.00026852	1.2397	0.00068032	0.7504	0.0004118	549.277963842466	43.632	1.0187	43.632	43.146	44.165	0					45	19	4	0	0	0	0.71172	1	15120	15120		38.176	17.304	1	9081100	+		2117	19557	1362	1378	2095	2095					-0.0056680477980535215
AHSTYVTAY	9	Unmodified	_AHSTYVTAY_					0	0	0		ENST00000297591.9_1_8:95522716-95522764:-|nuORF	ENST00000297591.9_1_8:95522716-95522764:-|nuORF	ENST00000297591.9_1_8:95522716-95522764:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	506.6781005859375	2	506.740357	1011.46616	-0.72571	-0.00036775	-0.079282	-4.0175E-05	-0.80499	-0.00040792	506.7402261422669	76.177	0.91175	76.918	76.589	77.501	0.74052					34	17	3	0	0	0	0.5339	1	29022	29022		18.135	3.2967	1	7651800			2118	10516	1363	1379	2096	2096					-0.03911395861860001
AHTFIYSC	8	Unmodified	_AHTFIYSC_					0	0	0			REV__ENSG00000162654|ENST00000355754|GBP4;REV__ENSG00000183347|ENST00000370456|GBP6	REV__ENSG00000162654|ENST00000355754|GBP4	MSMS	A375_MHC_IP_R1	1	471.17138671875	2	471.212921	940.411288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.216	1	32.216	31.716	32.716	0								0	0	0	0.16876	1	10390	10390		14.582	5.2343	1		+		2119	20286;21751	1364	1380	2097	2097					-0.06130105934119001
AIAGAECSGMI	11	Unmodified	_AIAGAECSGMI_					0	0	0		nc|ENSG00000143748|O15381-4|NVL	nc|ENSG00000143748|O15381-4|NVL	nc|ENSG00000143748|O15381-4|NVL	MULTI-MSMS	A375_MHC_IP_R2	2	512.1356201171875	2	511.735902	1021.45725	-1.1406	-0.00058368	0.43692	0.00022359	-0.70368	-0.0003601	511.73589845239115	59.614	0.55632	60.361	59.996	60.553	0.74714					32	10	4	0	0	0	0.41285	1	22538	22538		37.974	7.3375	1	1935500			2120	14654	1365	1381	2098	2098					-0.05261828814195724
AIAGAECSGMI	11	Unmodified	_AIAGAECSGMI_					0	0	0		nc|ENSG00000143748|O15381-4|NVL	nc|ENSG00000143748|O15381-4|NVL	nc|ENSG00000143748|O15381-4|NVL	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	511.735902	1021.45725	-1.1406	-0.00058368	0.43692	0.00022359	-0.70368	-0.0003601	511.73589845239115	59.614	0.55632	60.361	59.996	60.553	0.74714	0.044346	-0.0001062	NaN	37.974	32	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1935500			2121	14654	1365	1381							-0.05261828814195724
AIAHLIYSLN	10	Unmodified	_AIAHLIYSLN_					0	0	0		CPVL|p.H218Y|1|0.29|ENSG00000106066|chr7:29072381-29072381|G/A|missense_variant	CPVL|p.H218Y|1|0.29|ENSG00000106066|chr7:29072381-29072381|G/A|missense_variant	CPVL|p.H218Y|1|0.29|ENSG00000106066|chr7:29072381-29072381|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	372.6017761230469	3	372.213358	1113.61824	0.16674	6.2063E-05	-0.071555	-2.6634E-05	0.095184	3.5429E-05	372.213294976506	41.038	0.40316	41.038	40.863	41.266	0					17	7	3	0	0	0	0.93594	1	14222	14222		2.6312	0.54523	1	3830300			2122	654	1366	1382	2099	2099					0.06598004885699993
AIAKCLHCL	9	Unmodified	_AIAKCLHCL_					0	0	0			REV__ENSG00000204624|ENST00000294484|DISP3	REV__ENSG00000204624|ENST00000294484|DISP3	MULTI-MSMS	A375_MHC_IP_R2	2	486.6624755859375	2	486.26189	970.509228	-0.62824	-0.00030549	1.3427	0.00065291	0.71447	0.00034742	486.2625712246814	32.264	0.30493	33	32.857	33.162	0.73691					9	5	2	0	0	0	0.5339	1	11494	11494		18.135	18.135	1	3205500	+		2123	22532	1367	1383	2100	2100					0.02279379390199665
AIALWFTLDP	10	Unmodified	_AIALWFTLDP_					0	0	0		nc|ENSG00000117385|Q32P28-4|P3H1;ENSG00000117385|ENST00000296388|P3H1;nc|ENSG00000117385|Q32P28-3|P3H1;ENST00000460031.5_1_1:43212370-43220777:-|nuORF	nc|ENSG00000117385|Q32P28-4|P3H1	nc|ENSG00000117385|Q32P28-4|P3H1	MULTI-SECPEP	A375_MHC_IP_R1	1	383.27789306640625	3	382.877975	1145.6121	0.35439	0.00013569	-0.27368	-0.00010479	0.08071	3.0902E-05	382.8778434498808	61.884	0.71519	61.884	61.636	62.351	0					28	13	3	0	0	0	0.76414	1	22340	22340		12.873	3.3286	1	4864300			2124	3477	1368	1384	2101	2101					0.04511486654178043
AIANPFLTLI	10	Unmodified	_AIANPFLTLI_					0	0	0			REV__nc|ENSG00000204361|Q96DL1-3|NXPE2	REV__nc|ENSG00000204361|Q96DL1-3|NXPE2	MULTI-MSMS	A375_MHC_IP_R2	2	358.6177062988281	3	358.21822	1071.63283	-0.21806	-7.8114E-05	-0.10593	-3.7946E-05	-0.32399	-0.00011606	358.2181084328312	70.693	1.2665	71.427	70.997	72.264	0.73421					61	24	5	0	0	0	0.71266	1	26952	26952		6.6304	2.1015	1	68340000	+		2125	22509	1369	1385	2102	2102					0.09988077033835907
AIANPFLTLI	10	Unmodified	_AIANPFLTLI_					0	0	0			REV__nc|ENSG00000204361|Q96DL1-3|NXPE2	REV__nc|ENSG00000204361|Q96DL1-3|NXPE2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	358.21822	1071.63283	0.25504	9.1359E-05	-0.54894	-0.00019664	-0.2939	-0.00010528	358.21799584918375	71.478	1.1625	71.478	71.159	72.321	0	0.025304	-0.00022855	NaN	6.6304	54	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41969000	+		2126	22509	1369	1385							0.09988077033835907
AIAPIIAAV	9	Unmodified	_AIAPIIAAV_					0	0	0		ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	420.1735534667969	2	419.773471	837.53239	0.11264	4.7283E-05	-0.11541	-4.8444E-05	-0.0027675	-1.1617E-06	419.77337561479055	111.91	1.0196	112.64	112.3	113.32	0.72458					36	19	3	0	0	0	0.011425	1	42148	42148		109.15	41.741	1	10267000			2127	929	1370	1386	2103	2103					0.1071246477083605
AIASHSVCL	9	Unmodified	_AIASHSVCL_					0	0	0		nc|ENSG00000119946|Q9NRU3-2|CNNM1;ENSG00000119946|ENST00000356713|CNNM1	nc|ENSG00000119946|Q9NRU3-2|CNNM1	nc|ENSG00000119946|Q9NRU3-2|CNNM1	MSMS	A375_MHC_IP_R1	1	450.68743896484375	2	450.73402	899.453487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.05	1	60.05	59.55	60.55	0								0	0	0	0.15486	1	21614	21614		13.508	3.3245	1				2128	3639	1371	1387	2104	2104					-0.00026130525748158107
AIATFWGSL	9	Unmodified	_AIATFWGSL_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	A375_MHC_IP_R1	1	483.6579895019531	2	483.258185	964.501818	-0.18708	-9.0409E-05	-1.0601	-0.00051232	-1.2472	-0.00060273	483.25778586164625	70.353	1.0736	70.353	70.034	71.108	0					30	20	2	0	0	0	0.3054	1	25546	25546		30.225	8.4782	1	1412700			2129	8255	1372	1388	2105	2105					0.01814686385796449
AICEYNEN	8	Unmodified	_AICEYNEN_					0	0	0		nc|ENSG00000156313|Q92834-4|RPGR;nc|ENSG00000156313|Q92834-2|RPGR;nc|ENSG00000156313|Q92834|RPGR	nc|ENSG00000156313|Q92834-4|RPGR	nc|ENSG00000156313|Q92834-4|RPGR	MSMS	A375_MHC_IP_R2	2	478.1659851074219	2	478.194925	954.375297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.11	1	108.86	108.36	109.36	0.75436								0	0	0	0.16876	1	40828	40828		5.7604	1.0044	1				2130	14697	1373	1389	2106	2106					-0.10371607901652169
AICGIEMDEY	10	Unmodified	_AICGIEMDEY_					0	0	0		PNPLA1|p.T164Dfs*101|1|0.49|ENSG00000180316|chr6:36293104-36293105|-/C|frameshift_variant;nc|ENSG00000180316|Q8N8W4|PNPLA1;ENSG00000180316|ENST00000636260|PNPLA1	PNPLA1|p.T164Dfs*101|1|0.49|ENSG00000180316|chr6:36293104-36293105|-/C|frameshift_variant	PNPLA1|p.T164Dfs*101|1|0.49|ENSG00000180316|chr6:36293104-36293105|-/C|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	572.7145385742188	2	572.238475	1142.4624	-0.58017	-0.00033199	2.7771	0.0015892	2.197	0.0012572	572.2402015293537	58.425	0.40876	59.174	58.98	59.389	0.74894					11	7	2	0	0	0	0.7098	1	22088	22088		7.9102	0.62092	1	1422200			2131	8288	1374	1390	2107	2107					-0.1031356974224309
AICGIEMDEY	10	Unmodified	_AICGIEMDEY_					0	0	0		PNPLA1|p.T164Dfs*101|1|0.49|ENSG00000180316|chr6:36293104-36293105|-/C|frameshift_variant;nc|ENSG00000180316|Q8N8W4|PNPLA1;ENSG00000180316|ENST00000636260|PNPLA1	PNPLA1|p.T164Dfs*101|1|0.49|ENSG00000180316|chr6:36293104-36293105|-/C|frameshift_variant	PNPLA1|p.T164Dfs*101|1|0.49|ENSG00000180316|chr6:36293104-36293105|-/C|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	572.238475	1142.4624	-0.28176	-0.00016123	4.5194	0.0025862	4.2376	0.0024249	572.2408394954734	59.174	0.40745	59.174	58.938	59.346	0	6.1171E-06	0.0009556	NaN	7.9102	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1050200			2132	8288	1374	1390							-0.1031356974224309
AICPNNHEV	9	Carbamidomethyl (C)	_AIC(Carbamidomethyl (C))PNNHEV_	AIC(1)PNNHEV		AIC(68)PNNHEV		0	1	0		ENST00000484600.6_1_7:98983337-98987636:+|nuORF;ENST00000484375.5_1_7:98972330-98988614:+|nuORF;ENSG00000130429|ENST00000646101|ARPC1B	ENST00000484600.6_1_7:98983337-98987636:+|nuORF	ENST00000484600.6_1_7:98983337-98987636:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	527.6424560546875	2	527.242741	1052.47093	-0.69967	-0.0003689	0.33986	0.00017919	-0.35981	-0.00018971	527.2429605956719	24.22	0.80962	24.22	23.991	24.801	0					38	15	3	0	0	0	0.040308	2	6880	6880;6971		68.081	24.786	1	103010000			2133	4244	1375	1391	2108;2109	2108	28				-0.05320834990743606
AICPNNHEV	9	Carbamidomethyl (C)	_AIC(Carbamidomethyl (C))PNNHEV_	AIC(1)PNNHEV		AIC(75)PNNHEV		0	1	0		ENST00000484600.6_1_7:98983337-98987636:+|nuORF;ENST00000484375.5_1_7:98972330-98988614:+|nuORF;ENSG00000130429|ENST00000646101|ARPC1B	ENST00000484600.6_1_7:98983337-98987636:+|nuORF	ENST00000484600.6_1_7:98983337-98987636:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	527.6423950195312	2	527.242741	1052.47093	-0.76216	-0.00040185	0.24121	0.00012718	-0.52095	-0.00027467	527.243081186918	23.576	0.86386	24.206	23.979	24.843	0.63014					32	16	4	0	0	0	0.030038	3	7638	7572;7627;7638		74.929	28.008	1	60506000			2134	4244	1375	1391	2110;2111;2112	2112	28				-0.05320834990743606
AIDEDVLRY	9	Unmodified	_AIDEDVLRY_					0	0	0		ENSG00000100023|ENST00000398831|PPIL2;nc|ENSG00000100023|Q13356-2|PPIL2	ENSG00000100023|ENST00000398831|PPIL2	ENSG00000100023|ENST00000398831|PPIL2	MULTI-SECPEP	A375_MHC_IP_R1	1	547.2000122070312	2	547.279846	1092.54514	-0.85698	-0.00046901	0.0025601	1.4011E-06	-0.85442	-0.00046761	547.2801109972552	67.379	1.7321	67.379	66.122	67.854	0					80	33	5	0	0	0	0.019499	1	24479	24479		114.2	60.369	1	68624000			2135	2101	1376	1392	2113	2113					0.002568313724395921
AIDEDVLRY	9	Unmodified	_AIDEDVLRY_					0	0	0		ENSG00000100023|ENST00000398831|PPIL2;nc|ENSG00000100023|Q13356-2|PPIL2	ENSG00000100023|ENST00000398831|PPIL2	ENSG00000100023|ENST00000398831|PPIL2	MULTI-SECPEP	A375_MHC_IP_R2	2	547.2002563476562	2	547.279846	1092.54514	-0.88267	-0.00048307	0.9618	0.00052637	0.079132	4.3307E-05	547.2807224588564	66.733	1.8324	67.469	66.322	68.155	0.73631					97	35	5	0	0	0	0.01147	1	25246	25246		110.55	74.047	1	75434000			2136	2101	1376	1392	2114	2114					0.002568313724395921
AIDEKVQAV	9	Unmodified	_AIDEKVQAV_					0	0	0		ENSG00000100154|ENST00000397906|TTC28	ENSG00000100154|ENST00000397906|TTC28	ENSG00000100154|ENST00000397906|TTC28	MULTI-MSMS	A375_MHC_IP_R1	1	487.1711120605469	2	486.771657	971.528761	-0.34887	-0.00016982	-0.23274	-0.00011329	-0.5816	-0.00028311	486.7717166002144	32.154	0.46321	32.154	31.87	32.333	0					14	8	2	0	0	0	0.056914	1	10391	10391		61.602	9.9721	1	2972400			2137	2128	1377	1393	2115	2115					0.041857502063294305
AIDEPQLSSI	10	Unmodified	_AIDEPQLSSI_					0	0	0			REV__nc|ENSG00000242076|P01594|IGKV1-33	REV__nc|ENSG00000242076|P01594|IGKV1-33	MULTI-SECPEP	A375_MHC_IP_R1	1	536.2078247070312	2	536.779679	1071.5448	-0.51468	-0.00027627	1.1411	0.00061253	0.62644	0.00033626	536.7804527776848	47.895	0.40324	47.895	47.668	48.071	0					11	7	2	0	0	0	0.8528	1	16819	16819		11.495	5.1406	1	1671300	+		2138	27522	1378	1394	2116	2116					0.011894116525809295
AIDHNQMFQY	10	Unmodified	_AIDHNQMFQY_					0	0	0		ENSG00000087502|ENST00000360150|ERGIC2	ENSG00000087502|ENST00000360150|ERGIC2	ENSG00000087502|ENST00000360150|ERGIC2	MULTI-MSMS	A375_MHC_IP_R1	1	634.1823120117188	2	633.78223	1265.54991	-0.73673	-0.00046693	0.43516	0.0002758	-0.30157	-0.00019113	634.284027398752	58.625	0.45708	58.625	58.379	58.836	0					19	8	3	0	0	0	0.29801	1	21068	21068		40.239	24.09	1	2100400			2139	1877	1379	1395	2117	2117					-0.0722460775646141
AIDHNQMFQY	10	Unmodified	_AIDHNQMFQY_					0	0	0		ENSG00000087502|ENST00000360150|ERGIC2	ENSG00000087502|ENST00000360150|ERGIC2	ENSG00000087502|ENST00000360150|ERGIC2	MULTI-MSMS	A375_MHC_IP_R2	2	634.1817016601562	2	633.78223	1265.54991	-1.0616	-0.00067285	-0.27692	-0.00017551	-1.3386	-0.00084835	633.7819994291546	57.922	0.60583	58.671	58.323	58.929	0.74895					16	11	2	0	0	0	0.10955	1	21924	21924		61.602	40.065	1	2572200			2140	1877	1379	1395	2118	2118					-0.0722460775646141
AIDLLKEIY	9	Unmodified	_AIDLLKEIY_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;ENST00000467173.1_1_X:41026737-41027484:+|nuORF	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	A375_MHC_IP_R1	1	539.133544921875	2	539.313158	1076.61176	-0.46292	-0.00024966	-0.10149	-5.4734E-05	-0.56441	-0.00030439	539.3129006493895	106.6	0.40733	106.6	106.47	106.88	0					11	7	2	0	0	0	0.74327	1	39175	39175		23.79	9.3844	1	984230			2141	3905	1380	1396	2119	2119					0.07652066934338109
AIDLLKEIY	9	Unmodified	_AIDLLKEIY_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;ENST00000467173.1_1_X:41026737-41027484:+|nuORF	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-MATCH	A375_MHC_IP_R2	2		2	539.313158	1076.61176	-0.85552	-0.00046139	1.2444	0.0006711	0.38884	0.0002097	539.8159243844889	105.9	0.46037	106.66	106.32	106.78	0.75977	0.027812	0.00096274	NaN	36.506	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	925000			2142	3905	1380	1396							0.07652066934338109
AIDNPLHY	8	Unmodified	_AIDNPLHY_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q831Sfs*11|1|0.38|ENSG00000125107|chr16:58555897-58555898|-/A|frameshift_variant	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	A375_MHC_IP_R1	1	472.67498779296875	2	471.737617	941.460681	-0.42726	-0.00020156	-0.1265	-5.9673E-05	-0.55376	-0.00026123	471.7374936856821	55.148	1.0701	55.148	54.771	55.841	0					50	20	4	0	0	0	0.72761	1	19789	19789		26.341	10.494	1	33030000			2143	3941	1381	1397	2120	2120					-0.012390746536880215
AIDNPLHY	8	Unmodified	_AIDNPLHY_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q831Sfs*11|1|0.38|ENSG00000125107|chr16:58555897-58555898|-/A|frameshift_variant	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	A375_MHC_IP_R2	2	472.1375427246094	2	471.737617	941.460681	-0.80654	-0.00038047	-0.066642	-3.1438E-05	-0.87318	-0.00041191	471.7375240630993	54.403	0.8631	55.154	54.763	55.626	0.75075					46	16	4	0	0	0	0.27673	1	20474	20474		74.396	28.375	1	33287000			2144	3941	1381	1397	2121	2121					-0.012390746536880215
AIDPHLLLSV	10	Unmodified	_AIDPHLLLSV_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-SECPEP	A375_MHC_IP_R1	1	539.718994140625	2	539.318774	1076.623	-0.52548	-0.0002834	0.66284	0.00035748	0.13736	7.4079E-05	539.3192606140789	110.89	0.61482	110.89	110.59	111.21	0					21	11	2	0	0	0	0.56504	1	40655	40655		41.84	13.353	1	2249100			2145	3744	1382	1398	2122	2122					0.08774889028472899
AIDPHLLLSV	10	Unmodified	_AIDPHLLLSV_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-SECPEP	A375_MHC_IP_R2	2	539.7186889648438	2	539.318774	1076.623	-0.70935	-0.00038257	0.087077	4.6962E-05	-0.62228	-0.00033561	539.3187093823241	110	0.66409	110.74	110.38	111.04	0.74082					22	12	3	0	0	0	0.12137	1	41507	41507		60.074	27.288	1	2864000			2146	3744	1382	1398	2123	2123					0.08774889028472899
AIDQIAAISL	10	Unmodified	_AIDQIAAISL_					0	0	0			REV__nc|ENSG00000119509|Q9Y283-2|INVS	REV__nc|ENSG00000119509|Q9Y283-2|INVS	MULTI-SECPEP	A375_MHC_IP_R1	1	507.2236328125	2	507.795132	1013.57571	-0.41069	-0.00020855	-2.5228	-0.001281	-2.9335	-0.0014896	508.2951654219889	73.7	0.75962	73.7	73.336	74.095	0					26	14	3	0	0	0	0.60238	1	26810	26810		20.415	2.0414	1	1152400	+		2147	18074	1383	1399	2124	2124					0.06946609757483202
AIDQLHLEY	9	Unmodified	_AIDQLHLEY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	A375_MHC_IP_R1	1	551.6822509765625	2	551.282389	1100.55022	-0.54851	-0.00030238	0.68586	0.0003781	0.13735	7.572E-05	551.2823717371538	74.123	1.5203	74.123	73.64	75.16	0					87	29	5	0	0	0	0.0078574	1	26962	26962		168.54	105.96	1	122540000			2148	4242	1384	1400	2125	2125					0.003971352350617963
AIDQLHLEY	9	Unmodified	_AIDQLHLEY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	A375_MHC_IP_R2	2	551.68212890625	2	551.282389	1100.55022	-0.72659	-0.00040056	0.86527	0.00047701	0.13868	7.645E-05	551.2824695005023	73.468	1.4263	74.204	73.785	75.211	0.73541					90	27	5	0	0	0	0.0028773	1	27816	27816		193.29	121.37	1	129670000			2149	4242	1384	1400	2126	2126					0.003971352350617963
AIDRLVNIY	9	Unmodified	_AIDRLVNIY_					0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-SECPEP	A375_MHC_IP_R2	2	539.2086181640625	2	538.808574	1075.60259	-0.84475	-0.00045516	-0.24284	-0.00013084	-1.0876	-0.000586	538.8085968446487	76.115	0.81346	76.856	76.487	77.301	0.74052					41	15	4	0	0	0	0.20451	1	28884	28884		49.554	11.58	1	7111100			2150	1905	1385	1401	2127	2127					0.06781718368665679
AIDYIRFL	8	Unmodified	_AIDYIRFL_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1;ENST00000470247.1_1_17:17721556-17722545:-|nuORF;ENST00000469356.3_1_17:17720899-17721766:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	MULTI-SECPEP	A375_MHC_IP_R1	1	506.1873474121094	2	505.78711	1009.55967	-0.21817	-0.00011035	0.36142	0.0001828	0.14324	7.2451E-05	505.78725310751213	110.57	0.66256	110.57	110.14	110.8	0					19	12	2	0	0	0	0.5161	1	40526	40526		62.573	16.552	1	2239800			2151	1535	1386	1402	2128	2128					0.055269483112283524
AIDYIRFL	8	Unmodified	_AIDYIRFL_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1;ENST00000470247.1_1_17:17721556-17722545:-|nuORF;ENST00000469356.3_1_17:17720899-17721766:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	MULTI-SECPEP	A375_MHC_IP_R2	2	506.18682861328125	2	505.78711	1009.55967	-0.60177	-0.00030437	0.053587	2.7104E-05	-0.54819	-0.00027727	505.7871311166111	109.61	0.35307	110.36	110.13	110.48	0.74684					12	6	2	0	0	0	0.5161	1	41350	41350		45.7	0	1	2351700			2152	1535	1386	1402	2129	2129					0.055269483112283524
AIEDEPDQA	9	Unmodified	_AIEDEPDQA_					0	0	0			REV__ENSG00000167434|ENST00000300900|CA4	REV__ENSG00000167434|ENST00000300900|CA4	MSMS	A375_MHC_IP_R2	2	494.17926025390625	2	494.216911	986.41927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.457	1	67.194	66.694	67.694	0.73631								0	0	0	0.14905	1	25179	25179		23.148	2.6948	1		+		2153	20758	1387	1403	2130	2130					-0.07448300203668623
AIEDMVASV	9	Unmodified	_AIEDMVASV_					0	0	0		ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENST00000509849.5_1_5:37107706-37125531:-|nuORF	ENSG00000197603|ENST00000651892|CPLANE1	ENSG00000197603|ENST00000651892|CPLANE1	MULTI-MSMS	A375_MHC_IP_R2	2	467.6612548828125	2	467.731143	933.447733	-1.0315	-0.00048247	-0.046361	-2.1684E-05	-1.0779	-0.00050416	467.73111938677584	59.118	0.55729	59.865	59.59	60.148	0.74714					26	10	3	0	0	0	0.5339	1	22429	22429		18.135	1.1927	1	2779400			2154	9178	1388	1404	2131	2131					-0.021652738280636186
AIEGTYIDK	9	Unmodified	_AIEGTYIDK_					0	0	0		ENSG00000142534|ENST00000270625|RPS11;ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-SECPEP	A375_MHC_IP_R2	2	504.6800842285156	2	505.263665	1008.51278	-0.7368	-0.00037228	-2.1889	-0.001106	-2.9257	-0.0014783	505.2630092132122	67.089	0.96545	67.826	67.495	68.461	0.73631					28	18	3	0	0	0	0.65246	1	25412	25412		21.747	10.632	1	2004800			2155	5311	1389	1405	2132	2132					0.008860439694217348
AIEKNVLF	8	Unmodified	_AIEKNVLF_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-SECPEP	A375_MHC_IP_R1	1	467.6739807128906	2	467.273835	932.533118	-0.17403	-8.132E-05	0.12065	5.6378E-05	-0.053378	-2.4942E-05	467.2738309287794	62.737	0.71859	62.737	62.454	63.173	0					25	13	3	0	0	0	0.26691	1	22658	22658		78.149	23.376	1	4208100			2156	2847	1390	1406	2133	2133					0.06415259419907215
AIEKNVLF	8	Unmodified	_AIEKNVLF_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-SECPEP	A375_MHC_IP_R2	2	467.673583984375	2	467.273835	932.533118	-0.93514	-0.00043697	0.10103	4.721E-05	-0.83411	-0.00038976	467.2738547275389	61.841	0.60344	62.584	62.22	62.824	0.74263					22	11	3	0	0	0	0.26691	1	23413	23413		68.081	28.123	1	2681800			2157	2847	1390	1406	2134	2134					0.06415259419907215
AIEKSVPEQEK	11	Unmodified	_AIEKSVPEQEK_					0	0	0			REV__ENST00000560388.1_1_15:56927391-56935206:-|nuORF	REV__ENST00000560388.1_1_15:56927391-56935206:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	629.2846069335938	2	629.337892	1256.66123	-0.84335	-0.00053075	-0.61366	-0.0003862	-1.457	-0.00091695	629.3372445819587	131.22	0.4028	131.22	131.07	131.48	0					9	7	2	0	0	0	0.73494	1	50557	50557		4.1895	0.59301	1	1427700	+		2158	19046	1391	1407	2135	2135					0.043167301524590584
AIEPNYVFDP	10	Unmodified	_AIEPNYVFDP_					0	0	0			REV__tr|U7SNI7|U7SNI7_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01728PE=4SV=1	REV__tr|U7SNI7|U7SNI7_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01728PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	582.2161865234375	2	582.782222	1163.54989	-0.59424	-0.00034631	-0.17903	-0.00010434	-0.77327	-0.00045065	582.7819727415424	34.74	0.80891	35.504	35.171	35.98	0.76338					22	15	2	0	0	0	0.91556	1	12617	12617		1.3295	0	1	1664700	+		2159	28329	1392	1408	2136	2136					-0.025342844847955348
AIESFDPYS	9	Unmodified	_AIESFDPYS_					0	0	0			REV__nc|ENSG00000104415|O95388-3|CCN4	REV__nc|ENSG00000104415|O95388-3|CCN4	MULTI-MSMS	A375_MHC_IP_R2	2	515.2025146484375	2	514.732197	1027.44984	-0.94285	-0.00048532	-0.043633	-2.246E-05	-0.98648	-0.00050777	514.7324115279498	97.325	0.561	98.081	97.72	98.281	0.75586					16	10	2	0	0	0	0.63811	1	36898	36898		12.532	0.89125	1	1260300	+		2160	17324	1393	1409	2137	2137					-0.06278521818626359
AIESFDPYS	9	Unmodified	_AIESFDPYS_					0	0	0			REV__nc|ENSG00000104415|O95388-3|CCN4	REV__nc|ENSG00000104415|O95388-3|CCN4	MULTI-MATCH	A375_MHC_IP_R1	1		2	514.732197	1027.44984	-0.45561	-0.00023452	0.79201	0.00040768	0.3364	0.00017316	514.7324581159368	97.974	0.60988	97.974	97.59	98.2	0	-0.053579	0.00039786	NaN	12.532	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	993690	+		2161	17324	1393	1409							-0.06278521818626359
AIFASGSPF	9	Unmodified	_AIFASGSPF_					0	0	0		nc|ENSG00000065833|P48163-2|ME1;ENSG00000065833|ENST00000369705|ME1	nc|ENSG00000065833|P48163-2|ME1	nc|ENSG00000065833|P48163-2|ME1	MULTI-SECPEP	A375_MHC_IP_R2	2	448.1306457519531	2	448.729261	895.443968	-0.2624	-0.00011775	0.34819	0.00015624	0.085789	3.8496E-05	448.7291906460071	83.712	0.40929	84.452	84.305	84.715	0.73962					10	7	2	0	0	0	0.76187	1	31768	31768		11.64	11.64	1	1187700			2162	1393	1394	1410	2138	2138					-0.007935755396147215
AIFGTSRSW	9	Unmodified	_AIFGTSRSW_					0	0	0		nc|ENSG00000141376|Q9H6U6-6|BCAS3;ENSG00000141376|ENST00000407086|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3;ENST00000592827.1_1_17:59112066-59118167:+|nuORF	nc|ENSG00000141376|Q9H6U6-6|BCAS3	nc|ENSG00000141376|Q9H6U6-6|BCAS3	MULTI-SECPEP	A375_MHC_IP_R1	1	513.163818359375	2	512.764166	1023.51378	-0.64858	-0.00033257	0.37031	0.00018988	-0.27827	-0.00014269	512.7642516152531	66.079	0.70916	66.079	65.819	66.529	0					21	13	2	0	0	0	0.11849	1	23922	23922		61.602	38.866	1	2752900			2163	5232	1395	1411	2139	2139					0.0029630312900508216
AIFGTSRSW	9	Unmodified	_AIFGTSRSW_					0	0	0		nc|ENSG00000141376|Q9H6U6-6|BCAS3;ENSG00000141376|ENST00000407086|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3;ENST00000592827.1_1_17:59112066-59118167:+|nuORF	nc|ENSG00000141376|Q9H6U6-6|BCAS3	nc|ENSG00000141376|Q9H6U6-6|BCAS3	MULTI-SECPEP	A375_MHC_IP_R2	2	513.1637573242188	2	512.764166	1023.51378	-0.83839	-0.0004299	0.030072	1.542E-05	-0.80832	-0.00041448	512.7641746153307	65.207	0.60918	65.945	65.664	66.273	0.73811					24	11	3	0	0	0	0.30925	1	24698	24698		41.956	9.8386	1	2354100			2164	5232	1395	1411	2140	2140					0.0029630312900508216
AIFIRLRSL	9	Unmodified	_AIFIRLRSL_					0	0	0		DLG4|p.P652L|1|0.19|ENSG00000132535|chr17:7191914-7191914|G/A|missense_variant	DLG4|p.P652L|1|0.19|ENSG00000132535|chr17:7191914-7191914|G/A|missense_variant	DLG4|p.P652L|1|0.19|ENSG00000132535|chr17:7191914-7191914|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	544.9054565429688	2	544.850576	1087.6866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.335	1	86.335	85.835	86.835	0								0	0	0	0.15486	1	31656	31656		8.5933	0.68312	1				2165	752	1396	1412	2141	2141					0.14626294256208894
AIFKSLAA	8	Unmodified	_AIFKSLAA_					0	0	0			REV__ENST00000469841.5_1_3:57131519-57204269:-|nuORF	REV__ENST00000469841.5_1_3:57131519-57204269:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	411.1495361328125	2	410.749996	819.485439	-0.3664	-0.0001505	-0.75139	-0.00030863	-1.1178	-0.00045913	410.7498514150221	57.227	0.40871	57.976	57.762	58.171	0.74937					13	7	2	0	0	0	0.9187	1	21678	21678		19.257	1.1106	1	1408800	+		2166	19442	1397	1413	2142	2142					0.0684760521970702
AIFKSLAA	8	Unmodified	_AIFKSLAA_					0	0	0			REV__ENST00000469841.5_1_3:57131519-57204269:-|nuORF	REV__ENST00000469841.5_1_3:57131519-57204269:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	410.749996	819.485439	0.0054299	2.2303E-06	-0.078764	-3.2352E-05	-0.073334	-3.0122E-05	410.7501307615069	58.203	0.50665	58.203	57.923	58.43	0	0.11331	0.00022043	NaN	19.257	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1838000	+		2167	19442	1397	1413							0.0684760521970702
AIFMGIWVT	9	Unmodified	_AIFMGIWVT_					0	0	0		ENSG00000171714|ENST00000324559|ANO5	ENSG00000171714|ENST00000324559|ANO5	ENSG00000171714|ENST00000324559|ANO5	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1815795898438	2	519.278063	1036.54157	-0.52986	-0.00027514	2.3947	0.0012435	1.8648	0.00096836	519.7811316044478	95.943	0.55809	95.943	95.716	96.274	0					14	10	2	0	0	0	0.67221	1	35253	35253		8.5933	0	1	622290			2168	7630	1398	1414	2143	2143					0.0247649006487336
AIFYPVQGQ	9	Unmodified	_AIFYPVQGQ_					0	0	0		nc|ENSG00000135362|Q6MZQ0-4|PRR5L;ENSG00000135362|ENST00000530639|PRR5L	nc|ENSG00000135362|Q6MZQ0-4|PRR5L	nc|ENSG00000135362|Q6MZQ0-4|PRR5L	MULTI-MSMS	A375_MHC_IP_R1	1	512.22119140625	2	511.768917	1021.52328	-0.29291	-0.0001499	0.87302	0.00044678	0.58011	0.00029688	511.7692602340914	78.53	0.3547	78.53	78.352	78.707	0					11	6	2	0	0	0	0.40079	1	28693	28693		24.674	2.9272	1	5410800			2169	4674	1399	1415	2144	2144					0.013380714145228012
AIFYPVQGQ	9	Unmodified	_AIFYPVQGQ_					0	0	0		nc|ENSG00000135362|Q6MZQ0-4|PRR5L;ENSG00000135362|ENST00000530639|PRR5L	nc|ENSG00000135362|Q6MZQ0-4|PRR5L	nc|ENSG00000135362|Q6MZQ0-4|PRR5L	MULTI-MATCH	A375_MHC_IP_R2	2		2	511.768917	1021.52328	-0.76072	-0.00038932	0.9191	0.00047037	0.15837	8.1051E-05	511.7693544064103	77.719	0.81862	78.462	77.908	78.726	0.74293	-0.03421	2.3272E-05	NaN	24.674	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3369900			2170	4674	1399	1415							0.013380714145228012
AIGASLDPA	9	Unmodified	_AIGASLDPA_					0	0	0			REV__ENSG00000076356|ENST00000367033|PLXNA2	REV__ENSG00000076356|ENST00000367033|PLXNA2	MULTI-SECPEP	A375_MHC_IP_R2	2	408.1192932128906	2	407.718893	813.423233	0.11953	4.8736E-05	-0.025508	-1.04E-05	0.094024	3.8335E-05	407.71890202549025	98.86	0.70963	99.62	99.251	99.961	0.75977					23	13	4	0	0	0	0.089948	1	37487	37487		60.39	0	1	3453600	+		2171	16673	1400	1416	2145	2145					0.009058340807200693
AIGAVHEK	8	Unmodified	_AIGAVHEK_					0	0	0			REV__tr|U7SL89|U7SL89_FUSNUPolyribonucleotidenucleotidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pnpPE=3SV=1	REV__tr|U7SL89|U7SL89_FUSNUPolyribonucleotidenucleotidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pnpPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	412.630126953125	2	412.734877	823.455202	0.0003719	1.535E-07	-1.4279	-0.00058935	-1.4275	-0.0005892	412.73190447727916	106.03	2.3913	106.79	105.97	108.36	0.75977					83	46	3	0	0	0	0.77554	1	40628	40628		11.114	4.7604	1	3269600	+		2172	28265	1401	1417	2146	2146					0.036412465545254236
AIGDCLCCCC	10	Unmodified	_AIGDCLCCCC_					0	0	0			REV__ENST00000538918.5_1_12:133707252-133707324:+|nuORF	REV__ENST00000538918.5_1_12:133707252-133707324:+|nuORF	MSMS	A375_MHC_IP_R1	1	502.1900939941406	2	502.162344	1002.31014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.121	1	78.121	77.621	78.621	0								0	0	0	0.15417	1	28515	28515		7.2892	4.7117	1		+		2173	25938	1402	1418	2147	2147					-0.19092708286655125
AIGEGRVVYI	10	Unmodified	_AIGEGRVVYI_					0	0	0		nc|ENSG00000155846|Q86YN6-6|PPARGC1B;nc|ENSG00000155846|Q86YN6-5|PPARGC1B;nc|ENSG00000155846|Q86YN6-4|PPARGC1B;nc|ENSG00000155846|Q86YN6-2|PPARGC1B;nc|ENSG00000155846|Q86YN6-3|PPARGC1B;ENSG00000155846|ENST00000309241|PPARGC1B	nc|ENSG00000155846|Q86YN6-6|PPARGC1B	nc|ENSG00000155846|Q86YN6-6|PPARGC1B	MULTI-SECPEP	A375_MHC_IP_R1	1	539.2085571289062	2	538.808574	1075.60259	-0.74173	-0.00039965	-0.1818	-9.7956E-05	-0.92354	-0.00049761	538.8086712673481	76.971	0.71332	76.971	76.673	77.386	0					37	13	4	0	0	0	0.74754	1	28042	28042		29.082	0	1	7966100			2174	6158	1403	1419	2148	2148					0.06781718368665679
AIGEQNYCT	9	Unmodified	_AIGEQNYCT_					0	0	0			REV__CACNA1C|p.P1597Qfs*32|1|0.14|ENSG00000151067|chr12:2668954-2668961|CCTCTGAA/-|frameshift_variant	REV__CACNA1C|p.P1597Qfs*32|1|0.14|ENSG00000151067|chr12:2668954-2668961|CCTCTGAA/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	499.6873474121094	2	499.716024	997.417496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.858	1	79.858	79.358	80.358	0								0	0	0	0.15486	1	29152	29152		11.64	1.4569	1		+		2175	15548	1404	1420	2149	2149					-0.08131632493279994
AIGEQNYCT	9	Unmodified	_AIGEQNYCT_					0	0	0			REV__CACNA1C|p.P1597Qfs*32|1|0.14|ENSG00000151067|chr12:2668954-2668961|CCTCTGAA/-|frameshift_variant	REV__CACNA1C|p.P1597Qfs*32|1|0.14|ENSG00000151067|chr12:2668954-2668961|CCTCTGAA/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	499.68695068359375	2	499.716024	997.417496	-0.44576	-0.00022275	-1.0109	-0.00050517	-1.4567	-0.00072792	499.71574499864147	79.344	0.35313	80.089	79.896	80.249	0.74474					11	6	2	0	0	0	0.64808	1	30042	30042		11.64	3.047	1	943940	+		2176	15548	1404	1420	2150	2150					-0.08131632493279994
AIGSLAFFAV	10	Unmodified	_AIGSLAFFAV_					0	0	0			REV__ENSG00000110108|ENST00000227525|TMEM109	REV__ENSG00000110108|ENST00000227525|TMEM109	MULTI-SECPEP	A375_MHC_IP_R1	1	498.681396484375	2	498.28166	994.548768	-0.35474	-0.00017676	0.23155	0.00011538	-0.12318	-6.1381E-05	498.28171776233376	103.9	0.55912	103.9	103.63	104.18	0					18	10	2	0	0	0	0.2728	1	38143	38143		57.471	13.699	1	2424200	+		2177	17618	1405	1421	2151	2151					0.05127545936943534
AIGSVISVIL	10	Unmodified	_AIGSVISVIL_					0	0	0			REV__tr|U7SM82|U7SM82_FUSNUShort-chainfattyacidstransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01859PE=4SV=1	REV__tr|U7SM82|U7SM82_FUSNUShort-chainfattyacidstransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01859PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	486.6732177734375	2	486.310418	970.606283	-0.52521	-0.00025542	-0.49094	-0.00023875	-1.0162	-0.00049417	486.3101710631634	92.526	0.40552	93.265	93.038	93.443	0.73902					12	7	2	0	0	0	0.65982	1	35118	35118		34.102	14.845	1	743550	+		2178	28293	1406	1422	2152	2152					0.11980388142512766
AIGSVISVIL	10	Unmodified	_AIGSVISVIL_					0	0	0			REV__tr|U7SM82|U7SM82_FUSNUShort-chainfattyacidstransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01859PE=4SV=1	REV__tr|U7SM82|U7SM82_FUSNUShort-chainfattyacidstransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01859PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	486.310418	970.606283	-0.14095	-6.8544E-05	-1.3008	-0.00063257	-1.4417	-0.00070112	486.310029308361	93.428	0.40783	93.428	93.228	93.635	0	0.081439	-0.00063022	NaN	26.884	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	864350	+		2179	28293	1406	1422							0.11980388142512766
AIGTGLNPQNF	11	Unmodified	_AIGTGLNPQNF_					0	0	0		ENSG00000100354|ENST00000454349|TNRC6B	ENSG00000100354|ENST00000454349|TNRC6B	ENSG00000100354|ENST00000454349|TNRC6B	MULTI-SECPEP	A375_MHC_IP_R1	1	377.2649841308594	3	377.864617	1130.57202	0.39186	0.00014807	-0.015443	-5.8355E-06	0.37642	0.00014223	377.86442628030403	31.56	0.50705	31.56	31.414	31.921	0					11	9	2	0	0	0	0.98591	1	10081	10081		2.6312	0	1	842480			2180	2167	1407	1423	2153	2153					0.011959399836086959
AIGVLSGLI	9	Unmodified	_AIGVLSGLI_					0	0	0		nc|ENSG00000241356|P0C626|OR5G3	nc|ENSG00000241356|P0C626|OR5G3	nc|ENSG00000241356|P0C626|OR5G3	MULTI-SECPEP	A375_MHC_IP_R2	2	422.1706848144531	2	421.770929	841.527304	-0.011442	-4.826E-06	-0.1353	-5.7066E-05	-0.14674	-6.1892E-05	421.7706918153282	68.903	0.50727	69.638	69.323	69.83	0.73512					14	9	2	0	0	0	0.20094	1	26140	26140		53.576	0	1	1849700			2181	14913	1408	1424	2154	2154					0.10020160908231901
AIHIGDRIL	9	Unmodified	_AIHIGDRIL_					0	0	0		nc|ENSG00000155974|Q9Y3R0-3|GRIP1;nc|ENSG00000155974|Q9Y3R0-2|GRIP1;ENSG00000155974|ENST00000359742|GRIP1	nc|ENSG00000155974|Q9Y3R0-3|GRIP1	nc|ENSG00000155974|Q9Y3R0-3|GRIP1	MULTI-MSMS	A375_MHC_IP_R1	1	504.70318603515625	2	504.303458	1006.59236	-0.2991	-0.00015083	0.15714	7.9245E-05	-0.14196	-7.1589E-05	504.3034424490477	51.143	0.40595	51.143	50.864	51.27	0					12	7	2	0	0	0	0.6656	1	18162	18162		10.074	0.6908	1	2206100			2182	6168	1409	1425	2155	2155					0.08933155434078799
AIHKLFVPV	9	Unmodified	_AIHKLFVPV_					0	0	0			REV__nc|ENSG00000128159|Q96RT7-2|TUBGCP6	REV__nc|ENSG00000128159|Q96RT7-2|TUBGCP6	MSMS	A375_MHC_IP_R1	1	512.3564453125	2	512.32112	1022.62769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.105	1	77.105	76.605	77.605	0								0	0	0	0.15486	1	28123	28123		12.532	3.1841	1		+		2183	18443	1410	1426	2156	2156					0.11727817961889286
AIHPCENPTV	10	Unmodified	_AIHPCENPTV_					0	0	0		LMOD2|p.G194E|1|0.33|ENSG00000170807|chr7:123662167-123662167|G/A|missense_variant	LMOD2|p.G194E|1|0.33|ENSG00000170807|chr7:123662167-123662167|G/A|missense_variant	LMOD2|p.G194E|1|0.33|ENSG00000170807|chr7:123662167-123662167|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	540.6592407226562	2	540.760766	1079.50698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.47	1	108.47	107.97	108.97	0								0	0	0	0.15047	1	39789	39789		16.942	2.104	1				2184	14304	1411	1427	2157	2157					-0.029593778138860216
AIIANLQPTL	10	Unmodified	_AIIANLQPTL_					0	0	0			REV__FMNL3|p.F788Lfs*19|1|0.06|ENSG00000161791|chr12:49649280-49649281|-/TTCTGCTTTT|frameshift_variant	REV__FMNL3|p.F788Lfs*19|1|0.06|ENSG00000161791|chr12:49649280-49649281|-/TTCTGCTTTT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	527.1976928710938	2	527.318774	1052.623	-0.27558	-0.00014532	-0.63542	-0.00033507	-0.911	-0.00048039	527.3184965190673	114.22	0.50626	114.93	114.73	115.24	0.70985					12	9	2	0	0	0	0.72086	1	43137	43137		30.637	1.555	1	1324100	+		2185	20218	1412	1428	2158	2158					0.09878889028482263
AIICPNQPMY	10	Unmodified	_AIICPNQPMY_					0	0	0			REV__ENST00000401893.7_1_1:33116898-33134028:+|nuORF	REV__ENST00000401893.7_1_1:33116898-33134028:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	576.1754150390625	2	575.275195	1148.53584	-0.14223	-8.1821E-05	-1.1339	-0.00065233	-1.2762	-0.00073415	575.2745847956982	73.482	0.9689	74.218	73.836	74.805	0.7354					29	18	3	0	0	0	0.71118	1	27884	27884		7.2892	1.0834	1	2366400	+		2186	20262	1413	1429	2159	2159					-0.03248976509098611
AIIDGKIFCV	10	Carbamidomethyl (C)	_AIIDGKIFC(Carbamidomethyl (C))V_	AIIDGKIFC(1)V		AIIDGKIFC(66)V		0	1	0		ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF	ENSG00000149923|ENST00000279387|PPP4C	ENSG00000149923|ENST00000279387|PPP4C	MULTI-SECPEP	A375_MHC_IP_R1	1	568.7119750976562	2	568.312635	1134.61072	-0.31785	-0.00018064	-0.46872	-0.00026638	-0.78657	-0.00044702	568.312466867156	98.708	0.76566	98.708	98.352	99.117	0					30	14	3	0	0	0	0.15002	1	36261	36261		66.457	35.82	1	3371000			2187	5832	1414	1430	2160	2160	39				0.04879529293748419
AIIDGKIFCV	10	Carbamidomethyl (C)	_AIIDGKIFC(Carbamidomethyl (C))V_	AIIDGKIFC(1)V		AIIDGKIFC(48)V		0	1	0		ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF	ENSG00000149923|ENST00000279387|PPP4C	ENSG00000149923|ENST00000279387|PPP4C	MULTI-SECPEP	A375_MHC_IP_R2	2	568.7120361328125	2	568.312635	1134.61072	-0.45017	-0.00025584	-0.13977	-7.9434E-05	-0.58994	-0.00033527	568.8140089645018	97.832	1.0173	98.588	97.923	98.941	0.75586					32	19	2	0	0	0	0.37302	1	37139	37139		47.594	36.77	1	2684000			2188	5832	1414	1430	2161	2161	39				0.04879529293748419
AIIDGVESV	9	Unmodified	_AIIDGVESV_					0	0	0		nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000106278|P23471-3|PTPRZ1;PTPRZ1|p.N1301Tfs*23|1|0.25|ENSG00000106278|chr7:122012947-122012947|A/-|frameshift_variant	nc|ENSG00000106278|P23471-2|PTPRZ1	nc|ENSG00000106278|P23471-2|PTPRZ1	MULTI-MSMS	A375_MHC_IP_R2	2	902.8828735351562	1	902.482939	901.475663	-0.37283	-0.00033647	-0.064766	-5.845E-05	-0.4376	-0.00039492	902.4828865283912	78.382	0.50729	79.127	78.88	79.387	0.74474					14	9	2	0	0	0	0.0090669	1	29753	29753		100.37	18.507	1	3646700			2189	2679	1415	1431	2162	2162					0.020983724236771195
AIIDGVESV	9	Unmodified	_AIIDGVESV_					0	0	0		nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000106278|P23471-3|PTPRZ1;PTPRZ1|p.N1301Tfs*23|1|0.25|ENSG00000106278|chr7:122012947-122012947|A/-|frameshift_variant	nc|ENSG00000106278|P23471-2|PTPRZ1	nc|ENSG00000106278|P23471-2|PTPRZ1	MULTI-MATCH	A375_MHC_IP_R1	1		1	902.482939	901.475663	-0.028042	-2.5308E-05	0.15986	0.00014427	0.13181	0.00011896	902.4830555987376	79.086	0.55952	79.086	78.807	79.367	0	-0.020419	7.8262E-05	NaN	100.37	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5052400			2190	2679	1415	1431							0.020983724236771195
AIIDKYIKL	9	Unmodified	_AIIDKYIKL_					0	0	0		ENSG00000042445|ENST00000295802|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF;nc|ENSG00000042445|Q6NUM9-2|RETSAT	ENSG00000042445|ENST00000295802|RETSAT	ENSG00000042445|ENST00000295802|RETSAT	MULTI-MSMS	A375_MHC_IP_R1	1	359.96197509765625	3	359.561987	1075.66413	0.027797	9.9948E-06	-0.32811	-0.00011798	-0.30032	-0.00010798	359.5617831185852	76.595	0.55975	76.595	76.37	76.93	0					27	10	4	0	0	0	0.11715	1	27923	27923		47.594	13.373	1	5525900			2191	1174	1416	1432	2163	2163					0.12932650067932627
AIIDKYIKL	9	Unmodified	_AIIDKYIKL_					0	0	0		ENSG00000042445|ENST00000295802|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF;nc|ENSG00000042445|Q6NUM9-2|RETSAT	ENSG00000042445|ENST00000295802|RETSAT	ENSG00000042445|ENST00000295802|RETSAT	MULTI-SECPEP	A375_MHC_IP_R1	1	539.6297607421875	2	538.839342	1075.66413	-0.74615	-0.00040206	-0.27833	-0.00014997	-1.0245	-0.00055203	538.8391858026379	76.602	0.40676	76.602	76.421	76.827	0					16	7	3	0	0	0	0.14606	1	27946	27946		55.503	11.73	1	1849100			2192	1174	1416	1432	2164	2164					0.12932650067932627
AIIDKYIKL	9	Unmodified	_AIIDKYIKL_					0	0	0		ENSG00000042445|ENST00000295802|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF;nc|ENSG00000042445|Q6NUM9-2|RETSAT	ENSG00000042445|ENST00000295802|RETSAT	ENSG00000042445|ENST00000295802|RETSAT	MULTI-MSMS	A375_MHC_IP_R2	2	359.961669921875	3	359.561987	1075.66413	-0.19877	-7.1471E-05	-0.41164	-0.00014801	-0.61041	-0.00021948	359.561790801434	75.727	0.50999	76.467	76.232	76.742	0.74052					20	9	3	0	0	0	0.11715	1	28740	28740		47.594	13.373	1	6420600			2193	1174	1416	1432	2165	2165					0.12932650067932627
AIIDKYIKL	9	Unmodified	_AIIDKYIKL_					0	0	0		ENSG00000042445|ENST00000295802|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF;nc|ENSG00000042445|Q6NUM9-2|RETSAT	ENSG00000042445|ENST00000295802|RETSAT	ENSG00000042445|ENST00000295802|RETSAT	MULTI-MSMS	A375_MHC_IP_R2	2	538.9351196289062	2	538.839342	1075.66413	-0.85627	-0.00046139	-0.33604	-0.00018107	-1.1923	-0.00064246	538.8391990443874	75.736	0.40833	76.477	76.282	76.691	0.74052					12	7	2	0	0	0	0.28625	1	28765	28765		40.239	10.399	1	1705000			2194	1174	1416	1432	2166	2166					0.12932650067932627
AIIDPDDQFDQ	11	Unmodified	_AIIDPDDQFDQ_					0	0	0			REV__nc|ENSG00000132912|Q9UJW0-2|DCTN4	REV__nc|ENSG00000132912|Q9UJW0-2|DCTN4	MULTI-SECPEP	A375_MHC_IP_R1	1	638.1356201171875	2	638.788232	1275.56191	-0.66527	-0.00042497	-0.84974	-0.00054281	-1.515	-0.00096777	639.2886640382744	93.921	0.60655	93.921	93.584	94.191	0					28	11	3	0	0	0	0.86796	1	34490	34490		20.415	0	1	1467600	+		2195	18690	1417	1433	2167	2167					-0.06484712532301273
AIIDPDDQFDQ	11	Unmodified	_AIIDPDDQFDQ_					0	0	0			REV__nc|ENSG00000132912|Q9UJW0-2|DCTN4	REV__nc|ENSG00000132912|Q9UJW0-2|DCTN4	MULTI-SECPEP	A375_MHC_IP_R2	2	639.1884765625	2	638.788232	1275.56191	-0.66929	-0.00042753	0.1104	7.0524E-05	-0.55888	-0.00035701	638.7893283557784	93.216	0.86133	93.955	93.495	94.356	0.73902					27	16	3	0	0	0	0.94168	1	35402	35402		15.248	5.8654	1	2048100	+		2196	18690	1417	1433	2168	2168					-0.06484712532301273
AIIGGMFTV	9	Unmodified	_AIIGGMFTV_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;ENST00000488384.1_1_20:34144716-34145272:+|nuORF	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-SECPEP	A375_MHC_IP_R1	1	909.2859497070312	1	908.491001	907.483725	-0.0011229	-1.0201E-06	-0.17772	-0.00016146	-0.17884	-0.00016248	908.4914395432284	125.91	0.50183	125.91	125.6	126.1	0					12	9	2	0	0	0	0.0088186	1	48040	48040		137.59	84.01	1	19892000			2197	4017	1418	1434	2169	2169					0.026282281394401252
AIIGGTFTV	9	Unmodified	_AIIGGTFTV_					0	0	0		nc|ENSG00000113719|Q969X5-2|ERGIC1;ENSG00000113719|ENST00000393784|ERGIC1	nc|ENSG00000113719|Q969X5-2|ERGIC1	nc|ENSG00000113719|Q969X5-2|ERGIC1	MULTI-MSMS	A375_MHC_IP_R1	1	878.8978271484375	1	878.498195	877.490919	-0.20902	-0.00018363	-0.0041753	-3.668E-06	-0.2132	-0.00018729	878.4981376371011	104.67	0.96351	104.67	104.39	105.35	0					48	18	4	0	0	0	0.010868	1	38389	38389		179.23	33.223	1	69620000			2198	3176	1419	1435	2170	2170					0.047272840115169856
AIIGGTFTV	9	Unmodified	_AIIGGTFTV_					0	0	0		nc|ENSG00000113719|Q969X5-2|ERGIC1;ENSG00000113719|ENST00000393784|ERGIC1	nc|ENSG00000113719|Q969X5-2|ERGIC1	nc|ENSG00000113719|Q969X5-2|ERGIC1	MULTI-MSMS	A375_MHC_IP_R2	2	878.3275756835938	1	878.498195	877.490919	-0.49298	-0.00043309	0.40169	0.00035289	-0.091291	-8.0199E-05	878.4985245090013	103.86	1.0674	104.62	104.3	105.36	0.76428					54	20	4	0	0	0	0.010868	1	39292	39292		179.23	47.932	1	74227000			2199	3176	1419	1435	2171	2171					0.047272840115169856
AIIGTPWFC	9	Unmodified	_AIIGTPWFC_					0	0	0			REV__nc|ENSG00000204314|Q99946-2|PRRT1	REV__nc|ENSG00000204314|Q99946-2|PRRT1	MULTI-MSMS	A375_MHC_IP_R2	2	504.6830139160156	2	504.254588	1006.49462	-0.59831	-0.0003017	0.4867	0.00024542	-0.11161	-5.628E-05	504.25482039287596	92.952	0.81204	93.691	93.24	94.053	0.73902					34	15	3	0	0	0	0.43185	1	35411	35411		23.148	23.148	1	4874000	+		2200	22505	1420	1436	2172	2172					-0.008363694862850934
AIIIWVCNL	9	Unmodified	_AIIIWVCNL_					0	0	0			REV__ENSG00000107611|ENST00000377833|CUBN	REV__ENSG00000107611|ENST00000377833|CUBN	MULTI-MSMS	A375_MHC_IP_R1	1	523.29541015625	2	522.799163	1043.58377	-0.54696	-0.00028595	-4.2277	-0.0022103	-4.7747	-0.0024962	522.7966685868018	91.524	0.60777	91.524	91.199	91.807	0					17	11	2	0	0	0	0.46038	1	33712	33712		21.747	0.87544	1	1372000	+		2201	17491	1421	1437	2173	2173					0.06372465473259581
AIIIWVCNL	9	Unmodified	_AIIIWVCNL_					0	0	0			REV__ENSG00000107611|ENST00000377833|CUBN	REV__ENSG00000107611|ENST00000377833|CUBN	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	522.799163	1043.58377	-0.54696	-0.00028595	-4.2277	-0.0022103	-4.7747	-0.0024962	522.7966685868018	91.524	0.60777	91.524	91.199	91.807	0	0	0	NaN	21.747	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1372000	+		2202	17491	1421	1437							0.06372465473259581
AIIMERLKSY	10	Unmodified	_AIIMERLKSY_					0	0	0		ENSG00000197016|ENST00000330619|ZNF470	ENSG00000197016|ENST00000330619|ZNF470	ENSG00000197016|ENST00000330619|ZNF470	MULTI-SECPEP	A375_MHC_IP_R2	2	408.6514892578125	3	408.565403	1222.67438	-0.16883	-6.898E-05	0.015152	6.1906E-06	-0.15368	-6.2789E-05	408.56522838807143	54.614	0.9659	55.365	55.068	56.034	0.75075					30	18	2	0	0	0	0.92832	1	20814	20814		12.175	3.7304	1	1506900			2203	9103	1422	1438	2174	2174					0.07194889730862997
AIISELVSI	9	Unmodified	_AIISELVSI_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10821544-10823273:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	A375_MHC_IP_R1	1	473.1861267089844	2	472.786776	943.558998	-0.069743	-3.2974E-05	-0.54008	-0.00025534	-0.60982	-0.00028832	472.7864912495475	127.44	0.20293	127.44	127.32	127.52	0					8	3	3	0	0	0	0.010002	1	48868	48868		123.1	22.725	1	15138000			2204	2929	1423	1439	2175	2175					0.08496108871520391
AIISELVSI	9	Unmodified	_AIISELVSI_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10821544-10823273:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	A375_MHC_IP_R2	2	473.1875305175781	2	472.786776	943.558998	-0.56883	-0.00026894	-0.21343	-0.00010091	-0.78227	-0.00036985	472.7867690283313	127.07	0.30356	127.34	127.16	127.46	0.26593					8	5	2	0	0	0	0.001809	1	49787	49787		146.01	44.285	1	16133000			2205	2929	1423	1439	2176	2176					0.08496108871520391
AIISTLPFVDN	11	Unmodified	_AIISTLPFVDN_					0	0	0			REV__nc|ENSG00000163053|Q7RTX9-2|SLC16A14	REV__nc|ENSG00000163053|Q7RTX9-2|SLC16A14	MULTI-SECPEP	A375_MHC_IP_R2	2	397.6202087402344	3	397.22029	1188.63904	-0.42086	-0.00016717	0.27064	0.0001075	-0.15021	-5.9668E-05	397.2203437533553	57.553	0.60972	58.302	58.019	58.629	0.74894					34	11	4	0	0	0	0.47836	1	21783	21783		33.821	15.958	1	11973000	+		2206	20332	1424	1440	2177	2177					0.05226550474731084
AIKAPPGK	8	Unmodified	_AIKAPPGK_					0	0	0			REV__SATB1|p.D22N|1|0.35|ENSG00000182568|chr3:18420904-18420904|C/T|missense_variant	REV__SATB1|p.D22N|1|0.35|ENSG00000182568|chr3:18420904-18420904|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	391.6502380371094	2	391.250163	780.485774	-0.21008	-8.2195E-05	0.34002	0.00013303	0.12993	5.0836E-05	391.2501980148916	27.799	0.50659	28.477	28.301	28.808	0.67857					23	9	3	0	0	0	0.77717	1	9546	9546		5.2307	0	1	16532000	+		2207	21700	1425	1441	2178	2178					0.08675024939566356
AIKATFDIS	9	Unmodified	_AIKATFDIS_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000274487|A6NEC2|NPEPPSL1	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-SECPEP	A375_MHC_IP_R1	1	483.6560974121094	2	483.26875	964.522947	-0.29125	-0.00014075	-0.28985	-0.00014007	-0.5811	-0.00028083	483.26869220198415	37.684	0.3065	37.684	37.505	37.812	0					8	5	2	0	0	0	0.50702	1	12704	12704		25.399	8.457	1	927620			2208	5224	1426	1442	2179	2179					0.039266516946554475
AIKFLNRNAY	10	Unmodified	_AIKFLNRNAY_					0	0	0		nc|ENSG00000137968|Q8NCS7|SLC44A5;nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5	nc|ENSG00000137968|Q8NCS7|SLC44A5	nc|ENSG00000137968|Q8NCS7|SLC44A5	MULTI-SECPEP	A375_MHC_IP_R1	1	403.8919982910156	3	403.89614	1208.66659	-0.41886	-0.00016918	-3.6501	-0.0014743	-4.069	-0.0016434	404.2284941677699	59.716	0.50766	59.716	59.448	59.955	0					14	9	2	0	0	0	0.94587	1	21409	21409		1.9064	0	1	916250			2209	14630	1427	1443	2180	2180					0.07060498525629555
AIKGCFKG	8	Unmodified	_AIKGCFKG_					0	0	0			REV__NRP1|p.R100K|1|0.21|ENSG00000099250|chr10:33270806-33270806|C/T|missense_variant	REV__NRP1|p.R100K|1|0.21|ENSG00000099250|chr10:33270806-33270806|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	412.28729248046875	2	412.228374	822.442194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.818	1	19.818	19.318	20.318	0								0	0	0	0.16876	1	4997	4997		10.183	3.8293	1		+		2210	17014	1428	1444	2181	2181					0.023870921707725756
AIKISDVDV	9	Unmodified	_AIKISDVDV_					0	0	0			REV__nc|ENSG00000115414|P02751-4|FN1	REV__nc|ENSG00000115414|P02751-4|FN1	MULTI-SECPEP	A375_MHC_IP_R2	2	480.6737976074219	2	480.274032	958.533512	-0.70017	-0.00033627	0.752	0.00036117	0.051834	2.4894E-05	480.274007439638	50.512	0.65869	51.266	51.006	51.665	0.75406					24	12	3	0	0	0	0.24548	1	19034	19034		36.127	0	1	1891300	+		2211	17883	1429	1445	2182	2182					0.05258634349092972
AIKKENDW	8	Unmodified	_AIKKENDW_					0	0	0			REV__ENST00000565532.5_1_16:66762088-66770076:-|nuORF	REV__ENST00000565532.5_1_16:66762088-66770076:-|nuORF	MSMS	A375_MHC_IP_R1	1	502.194580078125	2	502.263999	1002.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.376	1	69.376	68.876	69.876	0								0	0	0	0.16876	1	25173	25173		14.582	0.67564	1		+		2212	18878	1430	1446	2183	2183					0.012288834091350509
AIKQEAPAIN	10	Unmodified	_AIKQEAPAIN_					0	0	0			REV__DYNC2H1|p.I391N|1|0.83|ENSG00000187240|chr11:103120726-103120726|T/A|missense_variant	REV__DYNC2H1|p.I391N|1|0.83|ENSG00000187240|chr11:103120726-103120726|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	527.6639404296875	2	527.798206	1053.58186	-0.3279	-0.00017306	-0.81881	-0.00043217	-1.1467	-0.00060523	527.7978601027434	47.891	0.45318	47.891	47.618	48.071	0					14	8	2	0	0	0	0.90853	1	16893	16893		6.7232	0	1	1251800	+		2213	16049	1431	1447	2184	2184					0.05721127988999797
AIKQLHISS	9	Unmodified	_AIKQLHISS_					0	0	0		nc|ENSG00000266094|Q8WWW0-2|RASSF5;nc|ENSG00000266094|Q8WWW0-3|RASSF5;ENSG00000266094|ENST00000579436|RASSF5	nc|ENSG00000266094|Q8WWW0-2|RASSF5	nc|ENSG00000266094|Q8WWW0-2|RASSF5	MULTI-SECPEP	A375_MHC_IP_R1	1	499.1953430175781	2	498.795466	995.57638	-0.51568	-0.00025722	0.03079	1.5358E-05	-0.48489	-0.00024186	498.7954442232348	27.638	0.70647	27.638	27.432	28.138	0					32	13	3	0	0	0	0.50702	1	8402	8402		19.257	0	1	42493000			2214	9961	1432	1448	2185	2185					0.07841449197189831
AIKSRPVS	8	Unmodified	_AIKSRPVS_					0	0	0		nc|ENSG00000189195|Q5XKL5-4|BTBD8;nc|ENSG00000189195|Q5XKL5|BTBD8	nc|ENSG00000189195|Q5XKL5-4|BTBD8	nc|ENSG00000189195|Q5XKL5-4|BTBD8	MULTI-MSMS	A375_MHC_IP_R2	2	429.2908020019531	2	429.263802	856.513051	-0.25494	-0.00010944	-0.53712	-0.00023057	-0.79206	-0.00034	429.2633291415708	39.957	0.45573	40.731	40.524	40.98	0.77451					11	8	2	0	0	0	0.7479	1	14841	14841		20.871	1.4322	1	1568600			2215	14830	1433	1449	2186	2186					0.0790550847995064
AILAHLNTV	9	Unmodified	_AILAHLNTV_					0	0	0		nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS;ENST00000557589.1_1_12:56815505-56817595:-|nuORF;ENST00000555808.1_1_12:56815681-56815917:-|nuORF	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-SECPEP	A375_MHC_IP_R2	2	476.6845397949219	2	476.284734	950.554916	-0.83532	-0.00039785	0.056255	2.6793E-05	-0.77907	-0.00037106	476.28465656341695	60.338	0.56119	61.083	60.853	61.414	0.74503					12	10	2	0	0	0	0.070665	1	22877	22877		78.728	36.633	1	2762800			2216	3000	1434	1450	2187	2187					0.07766064168470166
AILDHQQF	8	Unmodified	_AILDHQQF_					0	0	0		ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;ENSG00000133812|ENST00000256190|SBF2;ENST00000526353.1_1_11:9983413-9985421:-|nuORF	ENST00000533770.5_1_11:9861043-10215451:-|nuORF	ENST00000533770.5_1_11:9861043-10215451:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	486.2184143066406	2	486.250892	970.48723	0.33985	0.00016525	-0.96479	-0.00046913	-0.62495	-0.00030388	486.2504068285066	44.954	0.30378	44.954	44.777	45.081	0					9	5	2	0	0	0	0.94479	1	15669	15669		13.508	0.97634	1	1267500			2217	4531	1435	1451	2188	2188					0.0008061423767458109
AILDKDGNF	9	Unmodified	_AILDKDGNF_					0	0	0		tr|U7SJ85|U7SJ85_FUSNUThioredoxin-disulfidereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02144PE=4SV=1	tr|U7SJ85|U7SJ85_FUSNUThioredoxin-disulfidereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02144PE=4SV=1	tr|U7SJ85|U7SJ85_FUSNUThioredoxin-disulfidereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02144PE=4SV=1	MSMS	A375_MHC_IP_R1	1	496.6943054199219	2	496.756007	991.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.161	1	78.161	77.661	78.661	0								0	0	0	0.1521	1	28530	28530		18.135	2.2878	1				2218	29447	1436	1452	2189	2189					0.001371771722460835
AILDPYKSV	9	Unmodified	_AILDPYKSV_					0	0	0			REV__ENSG00000015413|ENST00000690203|DPEP1	REV__ENSG00000015413|ENST00000690203|DPEP1	MULTI-SECPEP	A375_MHC_IP_R2	2	502.6766662597656	2	503.2844	1004.55425	-0.62927	-0.0003167	-1.2471	-0.00062764	-1.8764	-0.00094434	503.2829004596388	131.58	0.40598	131.77	131.65	132.05	0.18953					10	7	2	0	0	0	0.60012	1	51865	51865		12.532	3.9383	1	4836900	+		2219	16245	1437	1453	2190	2190					0.05215224728760859
AILDQKNFV	9	Unmodified	_AILDQKNFV_					0	0	0		ENST00000509159.1_1_5:105752187-105752631:-|nuORF	ENST00000509159.1_1_5:105752187-105752631:-|nuORF	ENST00000509159.1_1_5:105752187-105752631:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6949462890625	2	524.295299	1046.57605	-0.30392	-0.00015935	1.1007	0.0005771	0.79679	0.00041775	524.2950177000707	72.228	0.55684	72.228	71.866	72.423	0					19	10	3	0	0	0	0.50702	1	26287	26287		32.305	6.9062	1	2287300			2220	12888	1438	1454	2191	2191					0.05462029477325814
AILEKVQGL	9	Unmodified	_AILEKVQGL_					0	0	0		ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	MULTI-SECPEP	A375_MHC_IP_R1	1	485.6606140136719	2	485.800217	969.585882	-0.23254	-0.00011297	-0.7169	-0.00034827	-0.94944	-0.00046124	485.7999038898224	63.727	0.46113	63.727	63.477	63.939	0					10	8	2	0	0	0	0.47368	1	23072	23072		26.884	11.036	1	1063100			2221	5936	1439	1455	2192	2192					0.09987217482705546
AILESTEFLL	10	Unmodified	_AILESTEFLL_					0	0	0		PPP1R3A|p.S135F|1|0.24|ENSG00000154415|chr7:113918593-113918593|G/A|missense_variant	PPP1R3A|p.S135F|1|0.24|ENSG00000154415|chr7:113918593-113918593|G/A|missense_variant	PPP1R3A|p.S135F|1|0.24|ENSG00000154415|chr7:113918593-113918593|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	568.7156372070312	2	568.315897	1134.61724	-0.11918	-6.7733E-05	-0.47818	-0.00027176	-0.59736	-0.00033949	568.31554264599	109.4	0.71399	109.4	109.07	109.78	0					29	13	3	0	0	0	0.60556	1	40109	40109		20.454	4.6064	1	5509700			2222	15215	1440	1456	2193	2193					0.05531745726148074
AILESTEFLL	10	Unmodified	_AILESTEFLL_					0	0	0		PPP1R3A|p.S135F|1|0.24|ENSG00000154415|chr7:113918593-113918593|G/A|missense_variant	PPP1R3A|p.S135F|1|0.24|ENSG00000154415|chr7:113918593-113918593|G/A|missense_variant	PPP1R3A|p.S135F|1|0.24|ENSG00000154415|chr7:113918593-113918593|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	568.315897	1134.61724	-0.33096	-0.00018809	-0.31731	-0.00018033	-0.64827	-0.00036842	568.3157444385423	108.47	0.55908	109.23	108.92	109.48	0.75436	-0.087156	8.5745E-05	NaN	20.454	30	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5913600			2223	15215	1440	1456							0.05531745726148074
AILGIHNEV	9	Unmodified	_AILGIHNEV_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-SECPEP	A375_MHC_IP_R1	1	483.65008544921875	2	483.274367	964.53418	-0.27508	-0.00013294	-0.17333	-8.3767E-05	-0.44841	-0.00021671	483.27424343066536	57.185	1.0698	57.185	56.65	57.72	0					42	20	3	0	0	0	0.046478	1	20513	20513		92.653	28.417	1	9986800			2224	1529	1441	1457	2194	2194					0.05049473788812975
AILGIHNEV	9	Unmodified	_AILGIHNEV_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-SECPEP	A375_MHC_IP_R2	2	483.67401123046875	2	483.274367	964.53418	-0.8793	-0.00042494	0.030553	1.4765E-05	-0.84874	-0.00041018	483.27434925120247	56.276	1.0704	57.026	56.745	57.815	0.75015					35	20	3	0	0	0	0.074405	1	21232	21232		79.596	24.823	1	10581000			2225	1529	1441	1457	2195	2195					0.05049473788812975
AILKHQRGTV	10	Unmodified	_AILKHQRGTV_					0	0	0		ENSG00000132849|ENST00000642238|PATJ;ENST00000484937.5_1_1:62582831-62626723:+|nuORF	ENSG00000132849|ENST00000642238|PATJ	ENSG00000132849|ENST00000642238|PATJ	MULTI-SECPEP	A375_MHC_IP_R1	1	562.2417602539062	2	561.840739	1121.66693	-0.48732	-0.00027379	1.7854	0.0010031	1.2981	0.00072934	561.8419921227477	87.67	0.35741	87.67	87.441	87.798	0					11	6	2	0	0	0	0.90144	1	32177	32177		10.824	2.9138	1	2917200			2226	4458	1442	1458	2196	2196					0.11095918245450775
AILKKVIQW	9	Unmodified	_AILKKVIQW_					0	0	0		nc|ENSG00000113558|P63208-2|SKP1;ENSG00000113558|ENST00000353411|SKP1	nc|ENSG00000113558|P63208-2|SKP1	nc|ENSG00000113558|P63208-2|SKP1	MULTI-MSMS	A375_MHC_IP_R1	1	550.3805541992188	2	549.855327	1097.6961	-0.7758	-0.00042658	0.4352	0.0002393	-0.3406	-0.00018728	549.8554878637644	66.709	0.61313	66.709	66.478	67.091	0					25	11	3	0	0	0	0.027818	1	24141	24141		96.285	67.798	1	9421200			2227	3160	1443	1459	2197	2197					0.15116062541756037
AILKKVIQW	9	Unmodified	_AILKKVIQW_					0	0	0		nc|ENSG00000113558|P63208-2|SKP1;ENSG00000113558|ENST00000353411|SKP1	nc|ENSG00000113558|P63208-2|SKP1	nc|ENSG00000113558|P63208-2|SKP1	MULTI-SECPEP	A375_MHC_IP_R1	1	367.3060302734375	3	366.905977	1097.6961	0.018695	6.8592E-06	0.20737	7.6086E-05	0.22607	8.2946E-05	366.90607509183513	66.729	0.71495	66.729	66.428	67.143	0					26	13	4	0	0	0	0.69504	1	24167	24167		12.241	7.7118	1	3167100			2228	3160	1443	1459	2198	2198					0.15116062541756037
AILKKVIQW	9	Unmodified	_AILKKVIQW_					0	0	0		nc|ENSG00000113558|P63208-2|SKP1;ENSG00000113558|ENST00000353411|SKP1	nc|ENSG00000113558|P63208-2|SKP1	nc|ENSG00000113558|P63208-2|SKP1	MULTI-SECPEP	A375_MHC_IP_R2	2	367.3060302734375	3	366.905977	1097.6961	-0.041058	-1.5065E-05	-0.0021855	-8.0187E-07	-0.043244	-1.5866E-05	366.9059760057135	65.662	0.66142	66.4	66.121	66.782	0.73811					28	12	3	0	0	0	0.3243	1	24877	24877		39.95	18.413	1	5905800			2229	3160	1443	1459	2199	2199					0.15116062541756037
AILKKVIQW	9	Unmodified	_AILKKVIQW_					0	0	0		nc|ENSG00000113558|P63208-2|SKP1;ENSG00000113558|ENST00000353411|SKP1	nc|ENSG00000113558|P63208-2|SKP1	nc|ENSG00000113558|P63208-2|SKP1	MULTI-SECPEP	A375_MHC_IP_R2	2	550.2548828125	2	549.855327	1097.6961	-0.95635	-0.00052585	0.29579	0.00016264	-0.66055	-0.00036321	549.8553817692772	65.657	0.5593	66.395	66.121	66.68	0.73812					24	10	3	0	0	0	0.037185	1	24866	24866		85.272	56.785	1	10041000			2230	3160	1443	1459	2200	2200					0.15116062541756037
AILKPGPSL	9	Unmodified	_AILKPGPSL_					0	0	0		ENST00000489692.1_2_1:235492091-235492536:+|nuORF	ENST00000489692.1_2_1:235492091-235492536:+|nuORF	ENST00000489692.1_2_1:235492091-235492536:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	448.683837890625	2	448.284203	894.553853	0.085966	3.8537E-05	-0.87862	-0.00039387	-0.79266	-0.00035533	448.28372497208835	71.629	0.6544	71.629	71.313	71.968	0					21	12	3	0	0	0	0.4867	1	26003	26003		20.454	0	1	3653100			2231	12640	1444	1460	2201	2201					0.10235849799562402
AILKPGPSL	9	Unmodified	_AILKPGPSL_					0	0	0		ENST00000489692.1_2_1:235492091-235492536:+|nuORF	ENST00000489692.1_2_1:235492091-235492536:+|nuORF	ENST00000489692.1_2_1:235492091-235492536:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	448.6842346191406	2	448.284203	894.553853	-0.378	-0.00016945	-0.38869	-0.00017424	-0.76669	-0.00034369	448.2839153510094	70.761	0.55519	71.495	71.251	71.806	0.73421					16	10	2	0	0	0	0.4867	1	26834	26834		20.454	0	1	3550600			2232	12640	1444	1460	2202	2202					0.10235849799562402
AILLRTCRY	9	Unmodified	_AILLRTCRY_					0	0	0			REV__chr5:151266913-151270150|100|13.41|0.39|5.1|+|0|TE_info:L1MC4a,L1MC4a_dup3311,L1,LINE,acceptor,+,151270150,151271608|GM2A,None|15	REV__chr5:151266913-151270150|100|13.41|0.39|5.1|+|0|TE_info:L1MC4a,L1MC4a_dup3311,L1,LINE,acceptor,+,151270150,151271608|GM2A,None|15	MSMS	A375_MHC_IP_R1	1	554.6843872070312	2	554.818418	1107.62228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.381	1	88.381	87.881	88.881	0								0	0	0	0.11948	1	32443	32443		36.044	3.7387	1		+		2233	15759	1445	1461	2203	2203					0.072777711077606
AILLSTRWAR	10	Unmodified	_AILLSTRWAR_					0	0	0			REV__ENSG00000185291|ENST00000331035|IL3RA	REV__ENSG00000185291|ENST00000331035|IL3RA	MULTI-SECPEP	A375_MHC_IP_R1	1	396.9840087890625	3	396.240018	1185.69823	0.031533	1.2495E-05	-1.4346	-0.00056845	-1.4031	-0.00055596	396.23933749078697	62.732	0.92264	62.732	62.454	63.377	0					29	17	3	0	0	0	0.85074	1	22701	22701		23.801	5.0798	1	3769700	+		2234	21886	1446	1462	2204	2204					0.11280491279558191
AILMELERV	9	Unmodified	_AILMELERV_					0	0	0		ENSG00000103429|ENST00000261658|BFAR;nc|ENSG00000103429|Q9NZS9-2|BFAR	ENSG00000103429|ENST00000261658|BFAR	ENSG00000103429|ENST00000261658|BFAR	MULTI-SECPEP	A375_MHC_IP_R1	1	537.7044067382812	2	537.30481	1072.59507	-0.86828	-0.00046653	0.83294	0.00044754	-0.035335	-1.8985E-05	537.3049352295205	91.127	0.30273	91.127	90.997	91.299	0					10	5	2	0	0	0	0.61452	1	33491	33491		26.268	3.5319	1	1537800			2235	2451	1447	1463	2205	2205					0.06167242776700732
AILMELERV	9	Unmodified	_AILMELERV_					0	0	0		ENSG00000103429|ENST00000261658|BFAR;nc|ENSG00000103429|Q9NZS9-2|BFAR	ENSG00000103429|ENST00000261658|BFAR	ENSG00000103429|ENST00000261658|BFAR	MULTI-MATCH	A375_MHC_IP_R2	2		2	537.30481	1072.59507	-0.77216	-0.00041489	-0.12195	-6.5527E-05	-0.89412	-0.00048041	537.3045581509925	90.246	0.25526	90.978	90.851	91.106	0.7318	-0.074255	-0.00078129	NaN	26.268	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1344900			2236	2451	1447	1463							0.06167242776700732
AILPTSIFL	9	Unmodified	_AILPTSIFL_					0	0	0		nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5	nc|ENSG00000100462|O14744-3|PRMT5	nc|ENSG00000100462|O14744-3|PRMT5	MULTI-SECPEP	A375_MHC_IP_R2	2	975.30126953125	1	974.592096	973.584819	0.020265	1.975E-05	-0.013045	-1.2713E-05	0.0072204	7.037E-06	974.5919554845161	132.75	0.203	132.92	132.79	132.99	0.16487					7	3	3	0	0	0	0.10969	1	52188	52188		67.344	9.8725	1	15428000			2237	2182	1448	1464	2206	2206					0.09697003113808478
AILPTSIFL	9	Unmodified	_AILPTSIFL_					0	0	0		nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5	nc|ENSG00000100462|O14744-3|PRMT5	nc|ENSG00000100462|O14744-3|PRMT5	MULTI-MATCH	A375_MHC_IP_R1	1		1	974.592096	973.584819	-0.11799	-0.000115	-0.31946	-0.00031135	-0.43746	-0.00042634	974.5918263697531	132.92	0.25667	132.92	132.79	133.05	0	0.0019071	-0.00021123	NaN	67.344	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17541000			2238	2182	1448	1464							0.09697003113808478
AILRSYDV	8	Unmodified	_AILRSYDV_					0	0	0			REV__ENSG00000162897|ENST00000324852|FCAMR	REV__ENSG00000162897|ENST00000324852|FCAMR	MULTI-SECPEP	A375_MHC_IP_R1	1	468.6468200683594	2	468.761092	935.507631	-0.2922	-0.00013697	0.094314	4.4211E-05	-0.19789	-9.2762E-05	468.76103317595425	59.741	0.50746	59.741	59.498	60.006	0					16	9	2	0	0	0	0.8824	1	21592	21592		16.942	0	1	1841800	+		2239	20321	1449	1465	2207	2207					0.03729784897461741
AILRSYDV	8	Unmodified	_AILRSYDV_					0	0	0			REV__ENSG00000162897|ENST00000324852|FCAMR	REV__ENSG00000162897|ENST00000324852|FCAMR	MULTI-SECPEP	A375_MHC_IP_R2	2	469.1605529785156	2	468.761092	935.507631	-0.98219	-0.00046041	0.20336	9.5327E-05	-0.77883	-0.00036508	468.7610744386582	58.867	0.4057	59.614	59.336	59.742	0.74714					13	7	2	0	0	0	0.90775	1	22288	22288		10.074	6.1295	1	1481400	+		2240	20321	1449	1465	2208	2208					0.03729784897461741
AILRVIRLVRV	11	Unmodified	_AILRVIRLVRV_					0	0	0		ENSG00000111262|ENST00000382545|KCNA1;nc|ENSG00000130037|P22460-2|KCNA5;ENSG00000104848|ENST00000221444|KCNA7;ENSG00000177301|ENST00000316361|KCNA2;nc|ENSG00000151079|P17658|KCNA6;ENSG00000177272|ENST00000369769|KCNA3;ENSG00000130037|ENST00000252321|KCNA5	ENSG00000111262|ENST00000382545|KCNA1	ENSG00000111262|ENST00000382545|KCNA1	MSMS	A375_MHC_IP_R1	1	654.483642578125	2	654.453531	1306.89251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.2	1	110.2	109.7	110.7	0								0	0	0	0.1636	1	40411	40411		0	0	1				2241	2978	1450	1466	2209	2209					0.2513386743546562
AILSPAFKV	9	Unmodified	_AILSPAFKV_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1;ENSG00000170606|ENST00000304858|HSPA4;HSPA4L|p.I498Nfs*5|1|0.07|ENSG00000164070|chr4:127811548-127811549|-/TAACTTATTC|frameshift_variant;ENSG00000164070|ENST00000296464|HSPA4L	nc|ENSG00000120694|Q92598-2|HSPH1;ENSG00000170606|ENST00000304858|HSPA4	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MSMS	A375_MHC_IP_R1	1	474.193359375	2	473.292028	944.569503	-0.32603	-0.00015431	1.391	0.00065836	1.065	0.00050406	473.29314046998564	82.124	1.72	82.124	81.506	83.226	0					42	33	3	0	0	0	0.61998	1	30037	30037		13.906	3.8321	1	2229000			2242	3678;7525	1451	1467	2210	2210					0.09500136316603403
AILSPAFKV	9	Unmodified	_AILSPAFKV_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1;ENSG00000170606|ENST00000304858|HSPA4;HSPA4L|p.I498Nfs*5|1|0.07|ENSG00000164070|chr4:127811548-127811549|-/TAACTTATTC|frameshift_variant;ENSG00000164070|ENST00000296464|HSPA4L	nc|ENSG00000120694|Q92598-2|HSPH1;ENSG00000170606|ENST00000304858|HSPA4	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-SECPEP	A375_MHC_IP_R2	2	473.69189453125	2	473.292028	944.569503	-0.65832	-0.00031158	1.4218	0.00067292	0.76347	0.00036135	473.2929114059267	81.156	1.3211	81.901	81.112	82.433	0.74474					30	25	2	0	0	0	0.28216	1	30825	30825		41.84	5.7126	1	1618800			2243	3678;7525	1451	1467	2211	2211					0.09500136316603403
AILTTYKT	8	Unmodified	_AILTTYKT_					0	0	0			REV__ENST00000485009.1_1_7:115863047-115889401:+|nuORF	REV__ENST00000485009.1_1_7:115863047-115889401:+|nuORF	MSMS	A375_MHC_IP_R2	2	455.6976623535156	2	455.765843	909.517133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.461	1	86.197	85.697	86.697	0.73601								0	0	0	0.16876	1	32491	32491		9.3474	2.9933	1		+		2244	18838	1452	1468	2212	2212					0.058755531829774554
AILTVVPKI	9	Unmodified	_AILTVVPKI_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-SECPEP	A375_MHC_IP_R1	1	477.72296142578125	2	477.323328	952.632104	-0.66568	-0.00031775	0.3232	0.00015427	-0.34248	-0.00016347	477.32350142968687	91.188	0.65778	91.188	90.896	91.554	0					22	12	3	0	0	0	0.39388	1	33490	33490		32.305	19.774	1	2110600			2245	5536	1453	1469	2213	2213					0.15389282384796843
AILTVVPKI	9	Unmodified	_AILTVVPKI_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-SECPEP	A375_MHC_IP_R2	2	477.7229309082031	2	477.323328	952.632104	-0.43989	-0.00020997	0.20285	9.6826E-05	-0.23704	-0.00011314	477.32343193298243	90.213	0.71176	90.945	90.597	91.309	0.7318					24	13	3	0	0	0	0.20567	1	34339	34339		37.974	19.839	1	2420800			2246	5536	1453	1469	2214	2214					0.15389282384796843
AIMDIVIKV	9	Oxidation (M)	_AIM(Oxidation (M))DIVIKV_		AIM(1)DIVIKV		AIM(64)DIVIKV	0	0	1		ENSG00000172071|ENST00000303236|EIF2AK3	ENSG00000172071|ENST00000303236|EIF2AK3	ENSG00000172071|ENST00000303236|EIF2AK3	MULTI-MSMS	A375_MHC_IP_R1	1	509.70404052734375	2	509.304278	1016.594	-0.2679	-0.00013644	-0.57302	-0.00029184	-0.84091	-0.00042828	509.3039445607622	82.188	0.86273	82.188	81.86	82.722	0					30	16	3	0	0	0	0.050868	1	30015	30015		63.961	33.324	1	6059200			2247	7678	1454	1470	2215	2215		386			0.08637028407827074
AIMDIVIKV	9	Oxidation (M)	_AIM(Oxidation (M))DIVIKV_		AIM(1)DIVIKV		AIM(48)DIVIKV	0	0	1		ENSG00000172071|ENST00000303236|EIF2AK3	ENSG00000172071|ENST00000303236|EIF2AK3	ENSG00000172071|ENST00000303236|EIF2AK3	MULTI-MSMS	A375_MHC_IP_R1	1	509.3023986816406	2	509.304278	1016.594	-0.39977	-0.00020361	-3.1359	-0.0015971	-3.5357	-0.0018007	509.30343032525883	89.566	1.7759	89.566	88.205	89.981	0					47	34	3	0	0	0	0.11629	1	32626	32626		47.749	13.347	1	2000700			2248	7678	1454	1470	2216	2216		386			0.08637028407827074
AIMDIVIKV	9	Oxidation (M)	_AIM(Oxidation (M))DIVIKV_		AIM(1)DIVIKV		AIM(73)DIVIKV	0	0	1		ENSG00000172071|ENST00000303236|EIF2AK3	ENSG00000172071|ENST00000303236|EIF2AK3	ENSG00000172071|ENST00000303236|EIF2AK3	MULTI-MSMS	A375_MHC_IP_R2	2	509.7039489746094	2	509.304278	1016.594	-0.83626	-0.00042591	-0.014291	-7.2785E-06	-0.85055	-0.00043319	509.3042437021613	81.361	1.1161	82.103	81.518	82.634	0.74293					37	21	3	0	0	0	0.032333	1	30853	30853		72.968	41.7	1	7783800			2249	7678	1454	1470	2217	2217		386			0.08637028407827074
AIMDIVIKV	9	Oxidation (M)	_AIM(Oxidation (M))DIVIKV_		AIM(1)DIVIKV		AIM(59)DIVIKV	0	0	1		ENSG00000172071|ENST00000303236|EIF2AK3	ENSG00000172071|ENST00000303236|EIF2AK3	ENSG00000172071|ENST00000303236|EIF2AK3	MULTI-SECPEP	A375_MHC_IP_R2	2	509.70361328125	2	509.304278	1016.594	-0.74159	-0.00037769	-0.11159	-5.6836E-05	-0.85318	-0.00043453	509.30415458498584	80.171	0.86131	80.916	80.607	81.468	0.74474					31	16	3	0	0	0	0.0575	1	30431	30431		59.368	40.006	1	5015400			2250	7678	1454	1470	2218	2218		386			0.08637028407827074
AIMDIVIKV	9	Unmodified	_AIMDIVIKV_					0	0	0		ENSG00000172071|ENST00000303236|EIF2AK3	ENSG00000172071|ENST00000303236|EIF2AK3	ENSG00000172071|ENST00000303236|EIF2AK3	MULTI-SECPEP	A375_MHC_IP_R1	1	501.7063903808594	2	501.306821	1000.59909	-0.15408	-7.7242E-05	-0.19301	-9.6756E-05	-0.34709	-0.000174	501.30662833161347	109.34	0.6627	109.34	109.02	109.68	0					19	12	2	0	0	0	0.03109	1	40075	40075		103.35	68.952	1	3108300			2251	7678	1454	1471	2219	2219					0.09881332270435905
AIMDIVIKV	9	Unmodified	_AIMDIVIKV_					0	0	0		ENSG00000172071|ENST00000303236|EIF2AK3	ENSG00000172071|ENST00000303236|EIF2AK3	ENSG00000172071|ENST00000303236|EIF2AK3	MULTI-SECPEP	A375_MHC_IP_R2	2	501.7062683105469	2	501.306821	1000.59909	-0.57295	-0.00028723	0.003488	1.7486E-06	-0.56947	-0.00028548	501.30679746764696	108.38	0.76452	109.13	108.86	109.63	0.75436					24	14	2	0	0	0	0.11711	1	40933	40933		69.105	54.267	1	2038300			2252	7678	1454	1471	2220	2220					0.09881332270435905
AINDECYQV	9	Unmodified	_AINDECYQV_					0	0	0		nc|ENSG00000083642|Q9NTI5-2|PDS5B;ENSG00000083642|ENST00000315596|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-MSMS	A375_MHC_IP_R2	2	528.1287231445312	2	527.729132	1053.44371	-0.88762	-0.00046842	-0.73565	-0.00038823	-1.6233	-0.00085665	527.7288000120004	59.422	0.80854	60.169	59.845	60.653	0.74714					23	15	2	0	0	0	0.34064	1	22518	22518		27.629	13.047	1	1487900			2253	1783	1455	1472	2221	2221					-0.08087363321806151
AINEKYGMS	9	Unmodified	_AINEKYGMS_					0	0	0		tr|U7T3C0|U7T3C0_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00346PE=4SV=1	tr|U7T3C0|U7T3C0_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00346PE=4SV=1	tr|U7T3C0|U7T3C0_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00346PE=4SV=1	MSMS	A375_MHC_IP_R1	1	506.68426513671875	2	506.742042	1011.46953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.515	1	65.515	65.015	66.015	0								0	0	0	0.15411	1	23720	23720		14.838	1.3304	1				2254	29962	1456	1473	2222	2222					-0.035744690794899725
AINGDHTESE	10	Unmodified	_AINGDHTESE_					0	0	0		nc|ENSG00000289758|Q92902-2|HPS1;nc|ENSG00000289758|Q92902-4|HPS1;ENSG00000107521|ENST00000361490|HPS1;ENST00000474873.5_1_10:100195027-100205113:-|nuORF;ENST00000467246.5_1_10:100191016-100205113:-|nuORF;nc|ENSG00000289758|Q92902-3|HPS1	nc|ENSG00000289758|Q92902-2|HPS1	nc|ENSG00000289758|Q92902-2|HPS1	MULTI-SECPEP	A375_MHC_IP_R1	1	537.131103515625	2	536.730717	1071.44688	-1.0395	-0.00055793	0.80973	0.00043461	-0.22978	-0.00012333	536.7313226617395	30.227	0.70422	30.227	29.999	30.703	0					30	13	4	0	0	0	0.72086	1	9561	9561		30.637	7.4881	1	26716000			2255	2741	1457	1474	2223	2223					-0.08598396943420994
AINISVEQI	9	Unmodified	_AINISVEQI_					0	0	0			REV__ENSG00000082212|ENST00000321341|ME2	REV__ENSG00000082212|ENST00000321341|ME2	MULTI-SECPEP	A375_MHC_IP_R1	1	493.142822265625	2	493.779482	985.544411	-0.18207	-8.99E-05	-0.66931	-0.00033049	-0.85137	-0.00042039	493.7788781091078	51.773	0.50604	51.773	51.424	51.93	0					11	9	2	0	0	0	0.52144	1	18389	18389		23.148	0	1	805060	+		2256	16787	1458	1475	2224	2224					0.05106036723384477
AINRDTAF	8	Unmodified	_AINRDTAF_					0	0	0		ENSG00000164292|ENST00000379982|RHOBTB3;ENST00000504949.1_1_5:95067575-95091515:+|nuORF	ENSG00000164292|ENST00000379982|RHOBTB3	ENSG00000164292|ENST00000379982|RHOBTB3	MULTI-SECPEP	A375_MHC_IP_R1	1	454.5835266113281	2	454.235242	906.45593	-0.26007	-0.00011813	-0.26276	-0.00011935	-0.52282	-0.00023748	454.2351712662852	64.406	0.40717	64.406	64.242	64.649	0					12	7	2	0	0	0	0.972	1	23381	23381		2.8892	0	1	752770			2257	6813	1459	1476	2225	2225					-0.0010395879644420347
AINRDTAF	8	Unmodified	_AINRDTAF_					0	0	0		ENSG00000164292|ENST00000379982|RHOBTB3;ENST00000504949.1_1_5:95067575-95091515:+|nuORF	ENSG00000164292|ENST00000379982|RHOBTB3	ENSG00000164292|ENST00000379982|RHOBTB3	MULTI-MATCH	A375_MHC_IP_R2	2		2	454.235242	906.45593	-0.15983	-7.2601E-05	-1.0716	-0.00048674	-1.2314	-0.00055934	454.235104050247	63.707	0.45689	64.447	64.292	64.749	0.74022	0.020736	-0.00046258	NaN	2.8892	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	687520			2258	6813	1459	1476							-0.0010395879644420347
AINRGIFV	8	Unmodified	_AINRGIFV_					0	0	0		SLC23A2|p.I524Pfs*41|1|0.39|ENSG00000089057|chr20:4861987-4862003|CGAGCCCAAAGAAGATC/-|frameshift_variant;ENSG00000089057|ENST00000338244|SLC23A2;nc|ENSG00000089057|Q9UGH3-2|SLC23A2	SLC23A2|p.I524Pfs*41|1|0.39|ENSG00000089057|chr20:4861987-4862003|CGAGCCCAAAGAAGATC/-|frameshift_variant	SLC23A2|p.I524Pfs*41|1|0.39|ENSG00000089057|chr20:4861987-4862003|CGAGCCCAAAGAAGATC/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	445.6657409667969	2	445.266345	888.518136	-0.44434	-0.00019785	-0.23997	-0.00010685	-0.68431	-0.0003047	445.26611547209575	72.769	0.55947	73.505	73.175	73.734	0.73541					18	10	2	0	0	0	0.77123	1	27617	27617		14.582	1.0738	1	2336800			2259	1912	1460	1477	2226	2226					0.0694181234256348
AINRRLGTF	9	Unmodified	_AINRRLGTF_					0	0	0		ENSG00000197635|ENST00000360534|DPP4;ENST00000434918.6_1_2:162849795-162888681:-|nuORF	ENSG00000197635|ENST00000360534|DPP4	ENSG00000197635|ENST00000360534|DPP4	MSMS	A375_MHC_IP_R2	2	524.4561157226562	2	524.306532	1046.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.919	1	60.666	60.166	61.166	0.74714								0	0	0	0.15486	1	22675	22675		13.508	0	1				2260	9181	1461	1478	2227	2227					0.07707673665595394
AINWSLYL	8	Unmodified	_AINWSLYL_					0	0	0		nc|ENSG00000145476|Q6ZWL3-2|CYP4V2;ENSG00000145476|ENST00000378802|CYP4V2;ENST00000502665.1_1_4:187126176-187131792:+|nuORF	nc|ENSG00000145476|Q6ZWL3-2|CYP4V2	nc|ENSG00000145476|Q6ZWL3-2|CYP4V2	MSMS	A375_MHC_IP_R1	1	490.0266418457031	2	490.26601	978.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.501	1	90.501	90.001	91.001	0								0	0	0	0.16876	1	33259	33259		26.341	1.6674	1				2261	5562	1462	1479	2228	2228					0.02734972902840127
AIPSEDILY	9	Unmodified	_AIPSEDILY_					0	0	0		nc|ENSG00000165730|Q6ZVD7-2|STOX1;ENSG00000165730|ENST00000298596|STOX1	nc|ENSG00000165730|Q6ZVD7-2|STOX1	nc|ENSG00000165730|Q6ZVD7-2|STOX1	MULTI-MSMS	A375_MHC_IP_R2	2	510.71063232421875	2	510.76604	1019.51753	-0.58687	-0.00029975	0.53307	0.00027228	-0.053795	-2.7477E-05	510.766272969316	110.58	0.6618	111.32	110.99	111.65	0.73692					29	12	3	0	0	0	0.1978	1	41731	41731		38.151	5.8457	1	4075600			2262	6985	1463	1480	2229	2229					0.00854928112187281
AIPVQGEVFG	10	Unmodified	_AIPVQGEVFG_					0	0	0		ENSG00000138336|ENST00000373644|TET1;nc|ENSG00000138336|Q8NFU7-3|TET1;nc|ENSG00000138336|Q8NFU7-4|TET1	ENSG00000138336|ENST00000373644|TET1	ENSG00000138336|ENST00000373644|TET1	MSMS	A375_MHC_IP_R2	2	508.7185974121094	2	508.7742	1015.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.864	1	87.597	87.097	88.097	0.733								0	0	0	0.14793	1	33034	33034		21.747	5.8995	1				2263	4979	1464	1481	2230	2230					0.026700540689716945
AIQAELLKV	9	Unmodified	_AIQAELLKV_					0	0	0		ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	MULTI-SECPEP	A375_MHC_IP_R1	1	493.2079772949219	2	492.808042	983.601532	-0.3349	-0.00016504	-0.33571	-0.00016544	-0.67061	-0.00033048	492.80790006554656	77.541	0.6095	77.541	77.184	77.793	0					24	11	3	0	0	0	0.3213	1	28260	28260		37.974	0	1	4213000			2264	7611	1465	1482	2231	2231					0.10907503999760593
AIQDEIRSV	9	Unmodified	_AIQDEIRSV_					0	0	0		ENSG00000164109|ENST00000296509|MAD2L1;ENST00000504707.1_1_4:120981275-120987923:-|nuORF	ENSG00000164109|ENST00000296509|MAD2L1;ENST00000504707.1_1_4:120981275-120987923:-|nuORF	ENSG00000164109|ENST00000296509|MAD2L1	MULTI-SECPEP	A375_MHC_IP_R1	1	516.179931640625	2	515.780013	1029.54547	-0.43041	-0.00022199	0.098856	5.0988E-05	-0.33155	-0.00017101	515.7799174860154	51.28	0.40672	51.28	51.068	51.475	0					13	7	2	0	0	0	0.13244	1	18214	18214		59.368	19.419	1	3075300			2265	6781;12824	1466	1483	2232	2232					0.03188251092274186
AIQDKLFQV	9	Unmodified	_AIQDKLFQV_					0	0	0		ENST00000514908.5_1_3:126423131-126653948:+|nuORF;ENSG00000159685|ENST00000290913|CHCHD6	ENST00000514908.5_1_3:126423131-126653948:+|nuORF	ENST00000514908.5_1_3:126423131-126653948:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	531.7031860351562	2	531.303124	1060.5917	-0.50546	-0.00026855	-0.077445	-4.1147E-05	-0.58291	-0.0003097	531.3030668850479	79.291	0.76747	79.291	78.96	79.728	0					24	14	2	0	0	0	0.011351	1	28908	28908		143.91	58.637	1	17259000			2266	6383	1467	1484	2233	2233					0.06382315994369492
AIQDKLFQV	9	Unmodified	_AIQDKLFQV_					0	0	0		ENST00000514908.5_1_3:126423131-126653948:+|nuORF;ENSG00000159685|ENST00000290913|CHCHD6	ENST00000514908.5_1_3:126423131-126653948:+|nuORF	ENST00000514908.5_1_3:126423131-126653948:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	531.70263671875	2	531.303124	1060.5917	-0.6016	-0.00031963	-0.18402	-9.777E-05	-0.78562	-0.0004174	531.3029505008747	78.517	0.76241	79.261	78.828	79.591	0.74474					24	14	2	0	0	0	0.051108	1	29779	29779		114.19	41.218	1	18979000			2267	6383	1467	1484	2234	2234					0.06382315994369492
AIQEQITRV	9	Unmodified	_AIQEQITRV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	A375_MHC_IP_R2	2	529.6417846679688	2	529.303655	1056.59276	-0.61565	-0.00032587	0.41431	0.00021929	-0.20134	-0.00010657	529.3034507645218	39.876	0.40633	40.651	40.422	40.828	0.77451					25	7	5	0	0	0	0.04566	1	14761	14761		97.741	19.681	1	8293900			2268	3941	1468	1485	2235	2235					0.0667253036326656
AIQGTPPSVP	10	Unmodified	_AIQGTPPSVP_					0	0	0		nc|ENSG00000166963|P78559-2|MAP1A;ENSG00000166963|ENST00000300231|MAP1A	nc|ENSG00000166963|P78559-2|MAP1A	nc|ENSG00000166963|P78559-2|MAP1A	MULTI-MSMS	A375_MHC_IP_R2	2	483.7906494140625	2	483.766374	965.518196	-0.56957	-0.00027554	0.30111	0.00014567	-0.26846	-0.00012987	483.76658258627685	83.197	0.30322	83.937	83.745	84.049	0.73962					11	5	3	0	0	0	0.70496	1	31648	31648		10.074	0.6908	1	821540			2269	7142	1469	1486	2236	2236					0.03405767551907957
AIQGTPPSVP	10	Unmodified	_AIQGTPPSVP_					0	0	0		nc|ENSG00000166963|P78559-2|MAP1A;ENSG00000166963|ENST00000300231|MAP1A	nc|ENSG00000166963|P78559-2|MAP1A	nc|ENSG00000166963|P78559-2|MAP1A	MULTI-MATCH	A375_MHC_IP_R1	1		2	483.766374	965.518196	-0.46465	-0.00022478	0.36549	0.00017681	-0.099154	-4.7967E-05	483.76659185194285	84.091	0.45495	84.091	83.837	84.292	0	0.076973	1.1666E-05	NaN	10.074	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1003200			2270	7142	1469	1486							0.03405767551907957
AIQGTPPSVP	10	Unmodified	_AIQGTPPSVP_					0	0	0		nc|ENSG00000166963|P78559-2|MAP1A;ENSG00000166963|ENST00000300231|MAP1A	nc|ENSG00000166963|P78559-2|MAP1A	nc|ENSG00000166963|P78559-2|MAP1A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	483.766374	965.518196	-0.56957	-0.00027554	0.30111	0.00014567	-0.26846	-0.00012987	483.76658258627685	83.197	0.30322	83.937	83.745	84.049	0.73962	-0.076973	-5.0629E-05	NaN	10.074	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	821540			2271	7142	1469	1486							0.03405767551907957
AIQKWQEP	8	Unmodified	_AIQKWQEP_					0	0	0			REV__nc|ENSG00000120053|P17174-2|GOT1	REV__nc|ENSG00000120053|P17174-2|GOT1	MULTI-SECPEP	A375_MHC_IP_R2	2	500.474853515625	2	500.266542	998.51853	-0.5012	-0.00025073	0.84734	0.00042389	0.34614	0.00017316	500.2668537075416	83.949	0.25777	84.689	84.559	84.817	0.73962					6	4	2	0	0	0	0.91495	1	31919	31919		24.674	13.85	1	733240	+		2272	18112	1470	1487	2237	2237					0.01921187271761937
AIQNVLNMA	9	Unmodified	_AIQNVLNMA_					0	0	0		SPTA1|p.D1774N|1|0.21|ENSG00000163554|chr1:158636025-158636025|C/T|missense_variant	SPTA1|p.D1774N|1|0.21|ENSG00000163554|chr1:158636025-158636025|C/T|missense_variant	SPTA1|p.D1774N|1|0.21|ENSG00000163554|chr1:158636025-158636025|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	487.4793701171875	2	487.260402	972.506251	-0.057905	-2.8215E-05	-1.1198	-0.00054561	-1.1777	-0.00057383	487.2597117221405	42.764	0.5059	42.764	42.487	42.993	0					13	9	2	0	0	0	0.77834	1	14736	14736		2.0598	0	1	1645900			2273	29239	1471	1488	2238	2238					0.018898275370702322
AIQQKLTQI	9	Unmodified	_AIQQKLTQI_					0	0	0			REV__nc|ENSG00000151849|Q9HC77-2|CENPJ	REV__nc|ENSG00000151849|Q9HC77-2|CENPJ	MULTI-SECPEP	A375_MHC_IP_R1	1	522.1978759765625	2	521.816399	1041.61824	-0.40091	-0.0002092	0.14043	7.3279E-05	-0.26048	-0.00013592	521.8164284858274	54.552	0.45708	54.552	54.263	54.72	0					20	8	3	0	0	0	0.064992	1	19508	19508		68.081	0	1	4081300	+		2274	19780	1472	1489	2239	2239					0.09910004885705348
AIQRVVGSA	9	Unmodified	_AIQRVVGSA_					0	0	0		nc|ENSG00000112280|P20849-3|COL9A1;ENSG00000112280|ENST00000357250|COL9A1	nc|ENSG00000112280|P20849-3|COL9A1	nc|ENSG00000112280|P20849-3|COL9A1	MULTI-MSMS	A375_MHC_IP_R2	2	450.6927185058594	2	450.766709	899.518865	-0.43186	-0.00019467	-0.25267	-0.0001139	-0.68452	-0.00030856	450.7666911530202	35.937	0.45926	36.7	36.486	36.946	0.76338					14	8	3	0	0	0	0.35581	1	13140	13140		26.884	1.4843	1	3588300			2275	3066	1473	1490	2240	2240					0.06508606991621946
AIQSNNFTTY	10	Unmodified	_AIQSNNFTTY_					0	0	0			REV__tr|U7SRI4|U7SRI4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01614PE=4SV=1	REV__tr|U7SRI4|U7SRI4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01614PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	581.220458984375	2	579.774928	1157.5353	-0.23572	-0.00013667	1.815	0.0010523	1.5792	0.00091561	579.776668245252	59.124	0.86485	59.124	58.633	59.498	0					45	16	4	0	0	0	0.71245	1	21228	21228		6.7232	0	1	9290100	+		2276	28399	1474	1491	2241	2241					-0.03716356632935458
AIRAHVGV	8	Unmodified	_AIRAHVGV_					0	0	0		nc|ENSG00000169660|Q8WVB3-2|HEXD	nc|ENSG00000169660|Q8WVB3-2|HEXD	nc|ENSG00000169660|Q8WVB3-2|HEXD	MULTI-MSMS	A375_MHC_IP_R2	2	411.6498107910156	2	411.750862	821.487171	0.20488	8.4361E-05	1.4943	0.00061527	1.6992	0.00069963	411.7514074693046	141.63	0.3571	141.67	141.48	141.84	0.04216					10	6	2	0	0	0	0.7779	1	55403	55403		2.5775	0	1	715970			2277	14759	1475	1492	2242	2242					0.06928659028324091
AIRLRVHPLY	10	Unmodified	_AIRLRVHPLY_					0	0	0		nc|ENSG00000158296|Q8WWT9-3|SLC13A3;nc|ENSG00000158296|Q8WWT9-5|SLC13A3;nc|ENSG00000158296|Q8WWT9-6|SLC13A3;ENSG00000158296|ENST00000279027|SLC13A3	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	MULTI-SECPEP	A375_MHC_IP_R1	1	619.779052734375	2	619.380032	1236.74551	-0.59232	-0.00036687	-0.17224	-0.00010668	-0.76456	-0.00047355	619.3799095592924	84.468	0.91469	84.468	84.091	85.005	0					33	17	3	0	0	0	0.9269	1	30901	30901		10.824	10.824	1	10565000			2278	6300	1476	1493	2243	2243					0.1366077055056394
AIRMQMEI	8	Oxidation (M)	_AIRM(Oxidation (M))QMEI_		AIRM(0.5)QM(0.5)EI		AIRM(0)QM(0)EI	0	0	1			REV__CFTR|p.G149E|1|0.17|ENSG00000001626|chr7:117531071-117531071|G/A|missense_variant	REV__CFTR|p.G149E|1|0.17|ENSG00000001626|chr7:117531071-117531071|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	504.65496826171875	2	504.254262	1006.49397	-0.32316	-0.00016295	0.74624	0.0003763	0.42308	0.00021334	504.25486465892465	93.673	1.0638	93.673	93.228	94.291	0					48	20	4	0	0	0	0.66714	1	34375	34375		42.095	6.0504	2	4958600	+		2279	15655	1477	1494	2244	2244		472;473			-0.00901532197610777
AIRRKKQGRWF	11	Unmodified	_AIRRKKQGRWF_					0	0	0			REV__nc|ENSG00000137807|Q02241-2|KIF23	REV__nc|ENSG00000137807|Q02241-2|KIF23	MSMS	A375_MHC_IP_R2	2	482.677978515625	3	482.624866	1444.85277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.32	1	87.053	86.553	87.553	0.733								0	0	0	0.16332	1	32827	32827		1.4551	0	1		+		2280	15713	1478	1495	2245	2245					0.1481374048478301
AIRTLGRLQK	10	Unmodified	_AIRTLGRLQK_					0	0	0		LGR6|p.E261K|1|0.23|ENSG00000133067|chr1:202297572-202297572|G/A|missense_variant	LGR6|p.E261K|1|0.23|ENSG00000133067|chr1:202297572-202297572|G/A|missense_variant	LGR6|p.E261K|1|0.23|ENSG00000133067|chr1:202297572-202297572|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	386.6231689453125	3	385.915535	1154.72478	0.3903	0.00015062	0.0015842	6.1135E-07	0.39188	0.00015123	385.9154696720591	40.554	0.30541	40.554	40.355	40.66	0					12	5	3	0	0	0	0.71455	2	13938	13938;13985		5.7834	0.80407	1	3557800			2281	14295	1479	1496	2246;2247	2246					0.1536018017088736
AISDFYYTV	9	Unmodified	_AISDFYYTV_					0	0	0		nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	MULTI-SECPEP	A375_MHC_IP_R1	1	539.20849609375	2	539.758215	1077.50188	-0.38741	-0.00020911	-0.36628	-0.0001977	-0.75369	-0.00040681	539.7583561811898	108.44	0.7609	108.44	108	108.76	0					22	14	2	0	0	0	0.47368	1	39749	39749		26.884	0	1	2104600			2282	6534	1480	1497	2248	2248					-0.03377358404873121
AISDFYYTV	9	Unmodified	_AISDFYYTV_					0	0	0		nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	MULTI-SECPEP	A375_MHC_IP_R2	2	540.1575317382812	2	539.758215	1077.50188	-0.88367	-0.00047697	-0.54079	-0.00029189	-1.4245	-0.00076886	539.7581952966855	107.72	0.61246	108.47	108.15	108.76	0.75436					25	11	3	0	0	0	0.16229	1	40684	40684		57.471	17.514	1	3224300			2283	6534	1480	1497	2249	2249					-0.03377358404873121
AISFGKKFV	9	Unmodified	_AISFGKKFV_					0	0	0			REV__ENSG00000173267|ENST00000372017|SNCG	REV__ENSG00000173267|ENST00000372017|SNCG	MULTI-SECPEP	A375_MHC_IP_R1	1	499.1971740722656	2	498.797478	995.580402	0.058127	2.8993E-05	-0.89147	-0.00044466	-0.83334	-0.00041567	498.7969421008833	48.689	0.40647	48.689	48.526	48.933	0					14	7	2	0	0	0	0.24548	1	17202	17202		36.127	0	1	1907500	+		2284	21210	1481	1498	2250	2250					0.08243538690896912
AISHFLDAL	9	Unmodified	_AISHFLDAL_					0	0	0			REV__ENST00000514536.5_1_4:53464769-53497293:-|nuORF	REV__ENST00000514536.5_1_4:53464769-53497293:-|nuORF	MSMS	A375_MHC_IP_R1	1	493.7052307128906	2	493.768917	985.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.656	1	95.656	95.156	96.156	0								0	0	0	0.1521	1	35159	35159		18.135	1.1927	1		+		2285	17574	1482	1499	2251	2251					0.029940714145027414
AISKSELTKF	10	Unmodified	_AISKSELTKF_					0	0	0		nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6	nc|ENSG00000125354|Q14141-3|SEPTIN6	nc|ENSG00000125354|Q14141-3|SEPTIN6	MULTI-MSMS	A375_MHC_IP_R1	1	375.6169128417969	3	375.216768	1122.62847	0.14404	5.4046E-05	0.31172	0.00011696	0.45576	0.00017101	375.2167309972797	27.825	0.40373	27.825	27.684	28.088	0					15	7	3	0	0	0	0.71118	1	8526	8526		3.8763	0	1	3075400			2286	3952	1483	1500	2252	2252					0.07206567820298915
AISLIEYVDI	10	Unmodified	_AISLIEYVDI_					0	0	0			REV__tr|U7SQS4|U7SQS4_FUSNU[RibosomalproteinbS18]-alanineN-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01774PE=3SV=1	REV__tr|U7SQS4|U7SQS4_FUSNU[RibosomalproteinbS18]-alanineN-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01774PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	568.7158813476562	2	568.315897	1134.61724	-0.13727	-7.8011E-05	-0.097761	-5.5559E-05	-0.23503	-0.00013357	568.3156396471172	111.61	1.0695	111.61	111.26	112.33	0					38	20	3	0	0	0	0.76414	1	40892	40892		20.454	4.6064	1	4862900	+		2287	28380	1484	1501	2253	2253					0.05531745726148074
AISPSLLPL	9	Unmodified	_AISPSLLPL_					0	0	0		nc|ENSG00000072121|Q68DK2-3|ZFYVE26;ENST00000394455.6_1_14:68196461-68236507:-|nuORF	nc|ENSG00000072121|Q68DK2-3|ZFYVE26	nc|ENSG00000072121|Q68DK2-3|ZFYVE26	MULTI-MSMS	A375_MHC_IP_R1	1	456.1836242675781	2	455.784036	909.553519	-0.24925	-0.0001136	0.77404	0.0003528	0.52479	0.00023919	455.7840662086825	74.02	0.71002	74.02	73.792	74.502	0					23	13	2	0	0	0	0.5339	1	26995	26995		18.135	4.6271	1	1614000			2288	11451	1485	1502	2254	2254					0.09512430079723799
AISPSLLPL	9	Unmodified	_AISPSLLPL_					0	0	0		nc|ENSG00000072121|Q68DK2-3|ZFYVE26;ENST00000394455.6_1_14:68196461-68236507:-|nuORF	nc|ENSG00000072121|Q68DK2-3|ZFYVE26	nc|ENSG00000072121|Q68DK2-3|ZFYVE26	MULTI-SECPEP	A375_MHC_IP_R2	2	456.1838684082031	2	455.784036	909.553519	-0.23081	-0.0001052	0.94239	0.00042953	0.71158	0.00032433	455.7840373856383	72.973	0.71236	73.709	73.429	74.141	0.73541					20	13	2	0	0	0	0.48581	1	27734	27734		24.674	7.7316	1	1730300			2289	11451	1485	1502	2255	2255					0.09512430079723799
AISVSRNRQPI	11	Unmodified	_AISVSRNRQPI_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-12|SYTL2;nc|ENSG00000137501|Q9HCH5-11|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MSMS	A375_MHC_IP_R1	1	414.6419372558594	3	414.242199	1239.70477	0.24937	0.0001033	-0.48784	-0.00020208	-0.23847	-9.8783E-05	414.24195371452873	32.133	0.46321	32.133	31.87	32.333	0					13	8	2	0	0	0	0.62292	1	10392	10392		12.856	0.62836	1	2534400			2290	4889	1486	1503	2256	2256					0.09450384440287962
AISYSSPYF	9	Unmodified	_AISYSSPYF_					0	0	0			REV__RBMS1|p.P274S|1|0.3|ENSG00000153250|chr2:160284855-160284855|G/A|missense_variant	REV__RBMS1|p.P274S|1|0.3|ENSG00000153250|chr2:160284855-160284855|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	517.693115234375	2	517.745108	1033.47566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.741	1	47.741	47.241	48.241	0								0	0	0	0.15486	1	16807	16807		8.5933	0	1		+		2291	27875	1487	1504	2257	2257					-0.039736275763289086
AITAIIAY	8	Unmodified	_AITAIIAY_					0	0	0		nc|ENSG00000073464|P51793-2|CLCN4;ENSG00000073464|ENST00000380833|CLCN4;CLCN4|p.P388L|1|0.41|ENSG00000073464|chrX:10208364-10208364|C/T|missense_variant;tr|U7SQT6|U7SQT6_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01789PE=4SV=1	nc|ENSG00000073464|P51793-2|CLCN4	nc|ENSG00000073464|P51793-2|CLCN4	MULTI-MSMS	A375_MHC_IP_R1	1	418.6497497558594	2	418.249829	834.485105	0.1066	4.4583E-05	-0.19505	-8.1578E-05	-0.088452	-3.6995E-05	418.249697269637	76.395	0.35341	76.395	76.219	76.572	0					10	6	2	0	0	0	0.24409	1	27881	27881		63.563	7.0216	1	1148500			2292	1562	1488	1505	2258	2258					0.0612418549984568
AITAIIAY	8	Unmodified	_AITAIIAY_					0	0	0		nc|ENSG00000073464|P51793-2|CLCN4;ENSG00000073464|ENST00000380833|CLCN4;CLCN4|p.P388L|1|0.41|ENSG00000073464|chrX:10208364-10208364|C/T|missense_variant;tr|U7SQT6|U7SQT6_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01789PE=4SV=1	nc|ENSG00000073464|P51793-2|CLCN4	nc|ENSG00000073464|P51793-2|CLCN4	MULTI-MSMS	A375_MHC_IP_R2	2	418.649658203125	2	418.249829	834.485105	-0.071486	-2.9899E-05	-0.22593	-9.4496E-05	-0.29742	-0.0001244	418.24970518998737	75.521	0.40965	76.261	76.078	76.487	0.74052					13	7	3	0	0	0	0.16801	1	28696	28696		74.396	7.361	1	1569400			2293	1562	1488	1505	2259	2259					0.0612418549984568
AITAWYNE	8	Unmodified	_AITAWYNE_					0	0	0		ZDHHC17-GLIPR1L1|2|fusion;nc|ENSG00000173401|Q6UWM5-2|GLIPR1L1;ENSG00000173401|ENST00000378695|GLIPR1L1	ZDHHC17-GLIPR1L1|2|fusion	ZDHHC17-GLIPR1L1|2|fusion	MSMS	A375_MHC_IP_R1	1	484.15606689453125	2	484.229625	966.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.534	1	69.534	69.034	70.034	0								0	0	0	0.16876	1	25234	25234		20.871	0	1				2294	7794	1489	1506	2260	2260					-0.039867808905796664
AITAWYNK	8	Unmodified	_AITAWYNK_					0	0	0		GLIPR1L1|p.E120K|1|0.5|ENSG00000173401|chr12:75343876-75343876|G/A|missense_variant	GLIPR1L1|p.E120K|1|0.5|ENSG00000173401|chr12:75343876-75343876|G/A|missense_variant	GLIPR1L1|p.E120K|1|0.5|ENSG00000173401|chr12:75343876-75343876|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	483.69219970703125	2	483.75581	965.497067	0.17157	8.2997E-05	-0.063009	-3.0481E-05	0.10856	5.2516E-05	483.75589954744305	69.57	0.86131	69.57	69.173	70.034	0					29	16	2	0	0	0	0.7479	1	25137	25137		20.871	0	1	3493100			2295	14050	1490	1507	2261	2261					0.012938022430375895
AITDVINIGI	10	Unmodified	_AITDVINIGI_					0	0	0		CON__Q3ZBD7	CON__Q3ZBD7	CON__Q3ZBD7	MULTI-SECPEP	A375_MHC_IP_R2	2	515.2025146484375	2	514.802957	1027.59136	-0.956	-0.00049215	-0.10583	-5.4481E-05	-1.0618	-0.00054663	514.8029128353833	97.127	0.71114	97.883	97.519	98.23	0.75586					17	13	2	0	0	0	0.43292	1	36898	36898		39.957	10.876	1	1802700		+	2296	621	1491	1508	2262	2262					0.0786689627452688
AITILLFFSIA	11	Unmodified	_AITILLFFSIA_					0	0	0			REV__CCL14|p.P9S|1|0.41|ENSG00000276409|chr17:35986625-35986625|G/A|missense_variant	REV__CCL14|p.P9S|1|0.41|ENSG00000276409|chr17:35986625-35986625|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	605.2685546875	2	604.8681	1207.72165	-0.2451	-0.00014825	0.72251	0.00043702	0.47741	0.00028877	605.3691737581025	145.24	0.29144	145.26	145.15	145.44	0.021408					27	18	2	0	0	0	0.99955	1	56689	56689		2.9952	1.3426	1	283770	+		2297	15603	1492	1509	2263	2263					0.12609492273531941
AITUQCKE	8	Unmodified	_AITUQCKE_					0	0	0		ENSG00000250722|ENST00000514985|SELENOP	ENSG00000250722|ENST00000514985|SELENOP	ENSG00000250722|ENST00000514985|SELENOP	MULTI-MSMS	A375_MHC_IP_R1	1	472.6451110839844	2	472.176464	942.338375	-0.39077	-0.00018451	0.74218	0.00035044	0.35142	0.00016593	472.1767887354564	73.158	0.25495	73.158	72.98	73.235	0					6	4	2	0	0	0	0.77488	1	26601	26601		0	0	0	841810			2298	9849	1493	1510	2264	2264					-0.1351010328249913
AITVDVWTL	9	Unmodified	_AITVDVWTL_					0	0	0		ENSG00000007202|ENST00000528896|BLTP2;nc|ENSG00000007202|Q14667-2|BLTP2;ENST00000579253.1_1_17:26967576-26969063:-|nuORF;nc|ENSG00000007202|Q14667-4|BLTP2;ENST00000577417.5_1_17:26966838-26970337:-|nuORF;ENST00000580882.5_1_17:26966325-26972074:-|nuORF	ENSG00000007202|ENST00000528896|BLTP2	ENSG00000007202|ENST00000528896|BLTP2	MULTI-SECPEP	A375_MHC_IP_R2	2	509.70361328125	2	509.2844	1016.55425	-0.72687	-0.00037018	-0.14679	-7.4757E-05	-0.87366	-0.00044494	509.28400847691603	80.06	0.50517	80.805	80.556	81.062	0.74474					16	9	2	0	0	0	0.3243	1	30431	30431		44.407	44.407	1	1887600			2299	937	1494	1511	2265	2265					0.04663224728756177
AIVDGVFAA	9	Unmodified	_AIVDGVFAA_					0	0	0		nc|ENSG00000125355|Q5JRV8-4|TMEM255A;ENSG00000125355|ENST00000371369|TMEM255A;ENSG00000184497|ENST00000375353|TMEM255B;nc|ENSG00000125355|Q5JRV8|TMEM255A	nc|ENSG00000125355|Q5JRV8-4|TMEM255A	nc|ENSG00000125355|Q5JRV8-4|TMEM255A	MULTI-SECPEP	A375_MHC_IP_R1	1	862.9172973632812	1	862.466895	861.459619	-0.38374	-0.00033096	0.20528	0.00017704	-0.17846	-0.00015392	862.4671439798344	95.487	0.60712	95.487	95.16	95.767	0					21	11	3	0	0	0	0.050875	1	35008	35008		85.357	40.95	1	6067500			2300	3953	1495	1512	2266	2266					0.023347109774135788
AIVDGVFAA	9	Unmodified	_AIVDGVFAA_					0	0	0		nc|ENSG00000125355|Q5JRV8-4|TMEM255A;ENSG00000125355|ENST00000371369|TMEM255A;ENSG00000184497|ENST00000375353|TMEM255B;nc|ENSG00000125355|Q5JRV8|TMEM255A	nc|ENSG00000125355|Q5JRV8-4|TMEM255A	nc|ENSG00000125355|Q5JRV8-4|TMEM255A	MULTI-MATCH	A375_MHC_IP_R2	2		1	862.466895	861.459619	-0.36961	-0.00031877	-0.080597	-6.9512E-05	-0.45021	-0.00038829	862.4667665321923	94.656	0.60647	95.401	95.071	95.678	0.74474	-0.04318	-0.00011476	NaN	85.357	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5154100			2301	3953	1495	1512							0.023347109774135788
AIVDKVPSV	9	Unmodified	_AIVDKVPSV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	A375_MHC_IP_R1	1	464.67889404296875	2	464.279118	926.543683	-0.039612	-1.8391E-05	-0.27262	-0.00012657	-0.31223	-0.00014496	464.27902301370233	53.983	2.5894	53.983	53.352	55.941	0					135	50	4	0	0	0	0.0098082	2	19355	19180;19355		125.04	56.957	1	602150000			2302	8361	1496	1513	2267;2268	2268					0.07747242074333371
AIVDKVPSV	9	Unmodified	_AIVDKVPSV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	A375_MHC_IP_R2	2	464.67852783203125	2	464.279118	926.543683	-1.18	-0.00054784	0.33485	0.00015546	-0.84512	-0.00039237	464.2793015248104	53.213	3.1559	53.964	53.284	56.439	0.75105					157	61	6	0	0	0	0.0098082	3	20179	19993;20179;20622		125.04	53.904	1	615380000			2303	8361	1496	1513	2269;2270;2271	2270					0.07747242074333371
AIVREGDSV	9	Unmodified	_AIVREGDSV_					0	0	0		nc|ENSG00000012124|P20273-5|CD22;nc|ENSG00000012124|P20273-4|CD22;nc|ENSG00000012124|P20273-3|CD22;ENSG00000012124|ENST00000085219|CD22	nc|ENSG00000012124|P20273-5|CD22	nc|ENSG00000012124|P20273-5|CD22	MULTI-MSMS	A375_MHC_IP_R1	1	473.6539611816406	2	473.253631	944.49271	-0.61831	-0.00029262	0.66848	0.00031636	0.050175	2.3745E-05	473.2542315583422	80.63	0.60825	80.63	80.34	80.948	0					25	11	3	0	0	0	0.36834	1	29428	29428		26.268	0.86883	1	4271400			2304	1007	1497	1514	2272	2272					0.01824293029483215
AIVREGDSV	9	Unmodified	_AIVREGDSV_					0	0	0		nc|ENSG00000012124|P20273-5|CD22;nc|ENSG00000012124|P20273-4|CD22;nc|ENSG00000012124|P20273-3|CD22;ENSG00000012124|ENST00000085219|CD22	nc|ENSG00000012124|P20273-5|CD22	nc|ENSG00000012124|P20273-5|CD22	MULTI-MSMS	A375_MHC_IP_R2	2	473.6536560058594	2	473.253631	944.49271	-0.49317	-0.0002334	0.94112	0.00044539	0.44795	0.00021199	473.254148286135	79.751	1.0138	80.496	79.796	80.81	0.74474					26	19	2	0	0	0	0.27064	1	30243	30243		32.786	7.3864	1	3876400			2305	1007	1497	1514	2273	2273					0.01824293029483215
AIVRRSGVLVW	11	Unmodified	_AIVRRSGVLVW_					0	0	0			REV__ENST00000551706.1_1_12:58144639-58145133:-|nuORF	REV__ENST00000551706.1_1_12:58144639-58145133:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	629.2872314453125	2	628.385314	1254.75608	-0.56559	-0.00035541	0.54703	0.00034374	-0.018566	-1.1667E-05	628.3856284734425	68.743	0.55562	68.743	68.514	69.07	0					23	10	4	0	0	0	0.72949	1	24938	24938		9.3831	5.0539	1	9005400	+		2306	26045	1498	1515	2274	2274					0.13888753204969362
AIVRSLPSV	9	Unmodified	_AIVRSLPSV_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;ENST00000549840.1_1_12:110765624-110769845:+|nuORF;nc|ENSG00000196296|O14983|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983-3|ATP2A1;nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3	nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000196296|O14983|ATP2A1;nc|ENSG00000074370|Q93084-4|ATP2A3	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	A375_MHC_IP_R1	1	471.69219970703125	2	471.292559	940.570566	-0.42967	-0.0002025	0.12309	5.8013E-05	-0.30658	-0.00014449	471.2925810094867	58.096	0.60833	58.096	57.72	58.328	0					24	11	3	0	0	0	0.030891	1	20832	20832		74.2	24.267	1	5167000			2307	7877;9024;1583	1499	1516	2275	2275					0.09790350685534577
AIVRSLPSV	9	Unmodified	_AIVRSLPSV_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;ENST00000549840.1_1_12:110765624-110769845:+|nuORF;nc|ENSG00000196296|O14983|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983-3|ATP2A1;nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3	nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000196296|O14983|ATP2A1;nc|ENSG00000074370|Q93084-4|ATP2A3	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-SECPEP	A375_MHC_IP_R2	2	471.6920471191406	2	471.292559	940.570566	-0.97649	-0.00046021	0.11401	5.3731E-05	-0.86249	-0.00040648	471.2925806618351	57.193	0.6608	57.943	57.612	58.273	0.75015					25	12	3	0	0	0	0.23313	1	21608	21608		57.249	25.981	1	7860800			2308	7877;9024;1583	1499	1516	2276	2276					0.09790350685534577
AIVSHRHL	8	Unmodified	_AIVSHRHL_					0	0	0			REV__nc|ENSG00000196832|Q8NGC1|OR11G2	REV__nc|ENSG00000196832|Q8NGC1|OR11G2	MULTI-MSMS	A375_MHC_IP_R2	2	467.1747741699219	2	466.774868	931.535184	-0.64165	-0.0002995	0.66762	0.00031163	0.025976	1.2125E-05	466.77520271445536	108.14	0.7673	108.9	108.51	109.27	0.75436					34	14	3	0	0	0	0.76248	1	40789	40789		16.942	16.942	1	6435700	+		2309	27438	1500	1517	2277	2277					0.06667732948380944
AIVSHRHL	8	Unmodified	_AIVSHRHL_					0	0	0			REV__nc|ENSG00000196832|Q8NGC1|OR11G2	REV__nc|ENSG00000196832|Q8NGC1|OR11G2	MULTI-MATCH	A375_MHC_IP_R1	1		2	466.774868	931.535184	-0.023766	-1.1093E-05	0.23519	0.00010978	0.21142	9.8686E-05	466.7750242373997	108.89	0.7605	108.89	108.66	109.42	0	-0.0043792	-0.0002187	NaN	16.942	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6031500	+		2310	27438	1500	1517							0.06667732948380944
AIVSHRHL	8	Unmodified	_AIVSHRHL_					0	0	0			REV__nc|ENSG00000196832|Q8NGC1|OR11G2	REV__nc|ENSG00000196832|Q8NGC1|OR11G2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	466.774868	931.535184	-0.64165	-0.0002995	0.66762	0.00031163	0.025976	1.2125E-05	466.77520271445536	108.14	0.7673	108.9	108.51	109.27	0.75436	0.0043792	0.000185	NaN	16.942	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6435700	+		2311	27438	1500	1517							0.06667732948380944
AIVSTRLAV	9	Unmodified	_AIVSTRLAV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R2	2	465.6923828125	2	465.292559	928.570566	-0.57311	-0.00026666	-0.10262	-4.7747E-05	-0.67573	-0.00031441	465.29247293615913	63.883	0.35454	64.623	64.394	64.749	0.74022					11	6	2	0	0	0	0.53748	1	24247	24247		24.021	0	1	1929500	+		2312	19932	1501	1518	2278	2278					0.10342350685516521
AIVVRKPS	8	Unmodified	_AIVVRKPS_					0	0	0		ENST00000399070.3_2_18:32886564-32887857:+|nuORF	ENST00000399070.3_2_18:32886564-32887857:+|nuORF	ENST00000399070.3_2_18:32886564-32887857:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	435.6817321777344	2	435.281995	868.549437	-0.17257	-7.5116E-05	-0.15089	-6.5678E-05	-0.32346	-0.00014079	435.28177240353045	69.239	0.30322	69.974	69.779	70.082	0.7348					8	5	2	0	0	0	0.8957	1	26264	26264		28.487	11.545	1	1046600			2313	11534	1502	1519	2279	2279					0.10990385376669565
AIVVRKPS	8	Unmodified	_AIVVRKPS_					0	0	0		ENST00000399070.3_2_18:32886564-32887857:+|nuORF	ENST00000399070.3_2_18:32886564-32887857:+|nuORF	ENST00000399070.3_2_18:32886564-32887857:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	435.281995	868.549437	0.047825	2.0817E-05	-0.17953	-7.8148E-05	-0.13171	-5.7331E-05	435.2818609413809	70.226	0.40854	70.226	69.983	70.392	0	0.12636	-8.4857E-06	NaN	28.487	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	857500			2314	11534	1502	1519							0.10990385376669565
AIVVSGHALTF	11	Unmodified	_AIVVSGHALTF_					0	0	0			REV__ENSG00000122729|ENST00000309951|ACO1	REV__ENSG00000122729|ENST00000309951|ACO1	MULTI-MSMS	A375_MHC_IP_R1	1	558.4631958007812	2	557.816399	1113.61824	-0.61917	-0.00034539	-0.27434	-0.00015303	-0.89352	-0.00049842	557.8162202047155	41.906	0.61085	41.906	41.674	42.285	0					21	11	2	0	0	0	0.73239	1	14557	14557		12.241	8.9593	1	7345300	+		2315	18217	1503	1520	2280	2280					0.06598004885699993
AIVVSTPSP	9	Unmodified	_AIVVSTPSP_					0	0	0			REV__ENST00000554335.5_1_14:55034028-55034365:+|nuORF	REV__ENST00000554335.5_1_14:55034028-55034365:+|nuORF	MSMS	A375_MHC_IP_R2	2	435.6817321777344	2	435.750193	869.485833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.306	1	70.041	69.541	70.541	0.73421								0	0	0	0.15486	1	26264	26264		12.532	2.3482	1		+		2316	26078	1504	1521	2281	2281					0.0458698014890615
AIYCYDPV	8	Unmodified	_AIYCYDPV_					0	0	0		ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	MULTI-SECPEP	A375_MHC_IP_R1	1	471.6687316894531	2	472.215129	942.415705	-0.40203	-0.00018985	-1.1884	-0.00056118	-1.5904	-0.00075103	472.21441861392844	59.98	0.30534	59.98	59.752	60.057	0					8	5	2	0	0	0	0.96296	1	21597	21597		5.7604	0	1	631800			2317	3247	1505	1522	2282	2282					-0.057806415112281684
AIYEALISI	9	Unmodified	_AIYEALISI_					0	0	0			REV__TATDN3|p.S238L|1|0.25|ENSG00000203705|chr1:212815044-212815044|C/T|missense_variant	REV__TATDN3|p.S238L|1|0.25|ENSG00000203705|chr1:212815044-212815044|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	497.68719482421875	2	496.786776	991.558998	-0.24293	-0.00012068	-0.34285	-0.00017033	-0.58578	-0.00029101	496.7866676973233	128.28	0.30502	128.28	128.13	128.43	0					11	5	3	0	0	0	0.1478	1	49276	49276		42.095	3.9434	1	13417000	+		2318	28081	1506	1523	2283	2283					0.062881088715244
AIYEGDWV	8	Unmodified	_AIYEGDWV_					0	0	0		ENSG00000101890|ENST00000218006|GUCY2F	ENSG00000101890|ENST00000218006|GUCY2F	ENSG00000101890|ENST00000218006|GUCY2F	MULTI-SECPEP	A375_MHC_IP_R2	2	477.1241760253906	2	476.724175	951.433798	-0.34077	-0.00016245	-0.49883	-0.0002378	-0.83959	-0.00040026	476.7242827735371	47.206	0.45928	47.967	47.664	48.123	0.76127					20	8	3	0	0	0	0.93416	1	17672	17672		20.871	0	1	5499700			2319	2333	1507	1524	2284	2284					-0.04386183264853116
AIYEGDWV	8	Unmodified	_AIYEGDWV_					0	0	0		ENSG00000101890|ENST00000218006|GUCY2F	ENSG00000101890|ENST00000218006|GUCY2F	ENSG00000101890|ENST00000218006|GUCY2F	MULTI-MATCH	A375_MHC_IP_R1	1		2	476.724175	951.433798	-0.27573	-0.00013145	0.19996	9.5325E-05	-0.075773	-3.6123E-05	476.724214699249	48.027	0.50483	48.027	47.718	48.223	0	0.030077	8.6258E-05	NaN	20.871	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4955300			2320	2333	1507	1524							-0.04386183264853116
AKAGKGGT	8	Unmodified	_AKAGKGGT_					0	0	0		ENSG00000268041|ENST00000597630|ERFL	ENSG00000268041|ENST00000597630|ERFL	ENSG00000268041|ENST00000597630|ERFL	MULTI-SECPEP	A375_MHC_IP_R2	2	690.1521606445312	1	689.394064	688.386788	-0.56856	-0.00039196	2.0059	0.0013829	1.4374	0.00099091	689.3949758946727	134.36	0.25395	134.5	134.39	134.65	0.13901					7	4	2	0	0	0	0.972	1	52894	52894		2.3027	0	1	915660			2321	9969	1508	1525	2285	2285					0.03013001974670715
AKAKIDALTR	10	Unmodified	_AKAKIDALTR_					0	0	0			REV__nc|ENSG00000143970|Q76L83-2|ASXL2	REV__nc|ENSG00000143970|Q76L83-2|ASXL2	MULTI-MSMS	A375_MHC_IP_R2	2	1087.061767578125	1	1086.66297	1085.65569	0.27933	0.00030353	-0.59038	-0.00064154	-0.31105	-0.00033801	1086.6620712534818	145.28	0.42142	145.3	145.06	145.48	0.021408					42	28	2	0	0	0	0.72747	1	56737	56737		0	0	1	213560	+		2322	19400	1509	1526	2286	2286					0.11629096151273188
AKAKIDALTR	10	Unmodified	_AKAKIDALTR_					0	0	0			REV__nc|ENSG00000143970|Q76L83-2|ASXL2	REV__nc|ENSG00000143970|Q76L83-2|ASXL2	MULTI-MATCH	A375_MHC_IP_R1	1		1	1086.66297	1085.65569	-0.25058	-0.0002723	-0.37392	-0.00040633	-0.6245	-0.00067862	1086.6623538842557	145.29	0.43372	145.29	144.97	145.4	0	-0.0070616	0.00014278	NaN	0	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237180	+		2323	19400	1509	1526							0.11629096151273188
AKAKIDALTR	10	Unmodified	_AKAKIDALTR_					0	0	0			REV__nc|ENSG00000143970|Q76L83-2|ASXL2	REV__nc|ENSG00000143970|Q76L83-2|ASXL2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	1086.66297	1085.65569	0.27933	0.00030353	-0.59038	-0.00064154	-0.31105	-0.00033801	1086.6620712534818	145.28	0.42142	145.3	145.06	145.48	0.021408	0.0070616	-9.2434E-05	NaN	0	42	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213560	+		2324	19400	1509	1526							0.11629096151273188
AKALPQNK	8	Unmodified	_AKALPQNK_					0	0	0		nc|ENSG00000140598|Q7Z2Z2-2|EFL1;ENSG00000140598|ENST00000268206|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	MULTI-MSMS	A375_MHC_IP_R1	1	435.663818359375	2	435.263802	868.513051	-0.29019	-0.00012631	-0.22647	-9.8576E-05	-0.51667	-0.00022489	435.26377383952894	46.784	0.75725	46.784	46.195	46.952	0					26	14	2	0	0	0	0.70206	1	16412	16412		34.102	5.0209	1	5920800			2325	5173	1510	1527	2287	2287					0.07353508479945958
AKANKWVT	8	Unmodified	_AKANKWVT_					0	0	0			REV__ART3|p.E71K|1|0.77|ENSG00000156219|chr4:76081965-76081965|G/A|missense_variant	REV__ART3|p.E71K|1|0.77|ENSG00000156219|chr4:76081965-76081965|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	458.68475341796875	2	459.263802	916.513051	0.17664	8.1123E-05	-1.0383	-0.00047685	-0.86165	-0.00039572	459.2632829696106	45.259	0.55538	45.259	44.928	45.484	0					16	10	2	0	0	0	0.95423	1	15699	15699		4.3292	4.3292	1	1224900	+		2326	15457	1511	1528	2288	2288					0.051455084799385986
AKAPTKPP	8	Unmodified	_AKAPTKPP_					0	0	0		nc|ENSG00000125731|Q9BRG2-2|SH2D3A;ENST00000595681.5_1_19:6754625-6763810:-|nuORF;ENSG00000125731|ENST00000245908|SH2D3A	nc|ENSG00000125731|Q9BRG2-2|SH2D3A	nc|ENSG00000125731|Q9BRG2-2|SH2D3A	MULTI-SECPEP	A375_MHC_IP_R1	1	405.5876770019531	2	405.247621	808.480688	-0.46285	-0.00018757	0.64064	0.00025962	0.17778	7.2047E-05	405.2477065895118	34.365	0.35453	34.365	34.253	34.608	0					10	6	2	0	0	0	0.84294	1	11348	11348		24.021	4.7636	1	978760			2327	14581	1512	1529	2289	2289					0.06878721076941474
AKCKKLRTL	9	Unmodified	_AKCKKLRTL_					0	0	0		ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	MSMS	A375_MHC_IP_R2	2	354.5675354003906	3	354.226833	1059.65867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.56	1	105.32	104.82	105.82	0.76308								0	0	0	0.15486	1	39559	39559		0.23584	0	1				2328	3062	1513	1530	2290	2290					0.13122648004491566
AKCKLTAA	8	Unmodified	_AKCKLTAA_					0	0	0			REV__ENSG00000156564|ENST00000338305|LRFN2	REV__ENSG00000156564|ENST00000338305|LRFN2	MSMS	A375_MHC_IP_R1	1	403.63250732421875	2	403.233656	804.452759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.8358	1	1.8358	1.3358	2.3358	0								0	0	0	0.16876	1	420	420		0.79363	0	1		+		2329	19989	1514	1531	2291	2291					0.04271074825180676
AKCKLTAA	8	Unmodified	_AKCKLTAA_					0	0	0			REV__ENSG00000156564|ENST00000338305|LRFN2	REV__ENSG00000156564|ENST00000338305|LRFN2	MSMS	A375_MHC_IP_R1	1	403.63250732421875	2	403.233656	804.452759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.0787	1	7.0787	6.5787	7.5787	0								0	0	0	0.16876	1	1611	1611		0.79363	0	1		+		2330	19989	1514	1531	2292	2292					0.04271074825180676
AKCKLTAA	8	Unmodified	_AKCKLTAA_					0	0	0			REV__ENSG00000156564|ENST00000338305|LRFN2	REV__ENSG00000156564|ENST00000338305|LRFN2	MSMS	A375_MHC_IP_R1	1	403.6326599121094	2	403.233656	804.452759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.5894	1	9.5894	9.0894	10.089	0								0	0	0	0.16876	1	2191	2191		0.79363	0	1		+		2331	19989	1514	1531	2293	2293					0.04271074825180676
AKCKLTAA	8	Unmodified	_AKCKLTAA_					0	0	0			REV__ENSG00000156564|ENST00000338305|LRFN2	REV__ENSG00000156564|ENST00000338305|LRFN2	MSMS	A375_MHC_IP_R1	1	403.63275146484375	2	403.233656	804.452759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.196	1	10.196	9.6959	10.696	0								0	0	0	0.16876	1	2339	2339		0.79363	0	1		+		2332	19989	1514	1531	2294	2294					0.04271074825180676
AKCKLTAA	8	Unmodified	_AKCKLTAA_					0	0	0			REV__ENSG00000156564|ENST00000338305|LRFN2	REV__ENSG00000156564|ENST00000338305|LRFN2	MSMS	A375_MHC_IP_R1	1	403.6326904296875	2	403.233656	804.452759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.726	1	10.726	10.226	11.226	0								0	0	0	0.16876	1	2462	2462		0.79363	0	1		+		2333	19989	1514	1531	2295	2295					0.04271074825180676
AKCKLTAA	8	Unmodified	_AKCKLTAA_					0	0	0			REV__ENSG00000156564|ENST00000338305|LRFN2	REV__ENSG00000156564|ENST00000338305|LRFN2	MSMS	A375_MHC_IP_R1	1	403.6328430175781	2	403.233656	804.452759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.73	1	13.73	13.23	14.23	0								0	0	0	0.16876	1	3148	3148		0.79363	0	1		+		2334	19989	1514	1531	2296	2296					0.04271074825180676
AKDMWDKLR	9	Unmodified	_AKDMWDKLR_					0	0	0		ENSG00000124785|ENST00000244766|NRN1;ENST00000495850.1_1_6:5999211-6003125:-|nuORF	ENSG00000124785|ENST00000244766|NRN1	ENSG00000124785|ENST00000244766|NRN1	MULTI-MSMS	A375_MHC_IP_R2	2	388.2622375488281	3	388.206098	1161.59646	-0.11528	-4.4753E-05	-0.37265	-0.00014466	-0.48793	-0.00018942	388.20602073109796	27.575	0.91317	28.254	27.895	28.808	0.67857					32	17	3	0	0	0	0.46357	1	9301	9301		21.59	10.095	1	2511300			2335	3930	1515	1532	2297	2297					0.02212876865473845
AKDMWDKLR	9	Unmodified	_AKDMWDKLR_					0	0	0		ENSG00000124785|ENST00000244766|NRN1;ENST00000495850.1_1_6:5999211-6003125:-|nuORF	ENSG00000124785|ENST00000244766|NRN1	ENSG00000124785|ENST00000244766|NRN1	MULTI-MATCH	A375_MHC_IP_R1	1		3	388.206098	1161.59646	0.17045	6.6171E-05	0.068329	2.6526E-05	0.23878	9.2697E-05	388.2061303020212	28.329	1.0583	28.329	27.887	28.945	0	0.037719	0.00010972	NaN	21.59	37	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3103100			2336	3930	1515	1532							0.02212876865473845
AKDTLCCPW	9	Unmodified	_AKDTLCCPW_					0	0	0		ENST00000343632.8_1_22:38028782-38028866:+|nuORF	ENST00000343632.8_1_22:38028782-38028866:+|nuORF	ENST00000343632.8_1_22:38028782-38028866:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	518.676513671875	2	518.733163	1035.45177	-1.0656	-0.00055279	-0.80271	-0.00041639	-1.8684	-0.00096918	518.7327367882968	57.361	0.81599	58.109	57.611	58.427	0.74894					33	15	3	0	0	0	0.6656	1	21627	21627		10.074	10.074	1	2887800			2337	10886	1516	1533	2298	2298					-0.06453507606011044
AKENAPAIIFI	11	Unmodified	_AKENAPAIIFI_					0	0	0		ENSG00000013275|ENST00000157812|PSMC4;ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;ENST00000601697.5_1_19:40477100-40486546:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4	ENSG00000013275|ENST00000157812|PSMC4	ENSG00000013275|ENST00000157812|PSMC4	MULTI-SECPEP	A375_MHC_IP_R2	2	594.245361328125	2	593.845156	1185.67576	-0.61967	-0.00036799	-0.1954	-0.00011604	-0.81507	-0.00048402	593.8450745347069	97.984	0.50867	98.744	98.436	98.945	0.75977					15	9	2	0	0	0	0.81292	1	37206	37206		26.021	0	1	1380500			2338	1016	1517	1534	2299	2299					0.09034847091265874
AKERQEKLKQL	11	Unmodified	_AKERQEKLKQL_					0	0	0			REV__nc|ENSG00000126787|Q15398-1|DLGAP5	REV__nc|ENSG00000126787|Q15398-1|DLGAP5	MULTI-MSMS	A375_MHC_IP_R2	2	686.3084716796875	2	685.90935	1369.80415	-0.64753	-0.00044415	-0.744	-0.00051032	-1.3915	-0.00095446	685.9086956358855	131.32	1.1195	131.51	130.88	132	0.18953					100	21	5	0	0	0	0.73679	1	51545	51545		5.2969	0.76802	1	154900000	+		2339	18397	1518	1535	2300	2300					0.1340378233435331
AKERQEKLKQL	11	Unmodified	_AKERQEKLKQL_					0	0	0			REV__nc|ENSG00000126787|Q15398-1|DLGAP5	REV__nc|ENSG00000126787|Q15398-1|DLGAP5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	685.90935	1369.80415	-0.85574	-0.00058696	-0.60401	-0.0004143	-1.4598	-0.0010013	685.9088168385904	131.5	1.1137	131.5	130.82	131.93	0	-0.0048065	9.2481E-05	NaN	5.2969	92	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151040000	+		2340	18397	1518	1535							0.1340378233435331
AKERQEKLKQL	11	Unmodified	_AKERQEKLKQL_					0	0	0			REV__nc|ENSG00000126787|Q15398-1|DLGAP5	REV__nc|ENSG00000126787|Q15398-1|DLGAP5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	685.90935	1369.80415	-0.64753	-0.00044415	-0.744	-0.00051032	-1.3915	-0.00095446	685.9086956358855	131.32	1.1195	131.51	130.88	132	0.18953	0.0048065	-9.9558E-05	NaN	5.2969	100	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154900000	+		2341	18397	1518	1535							0.1340378233435331
AKERVVQV	8	Unmodified	_AKERVVQV_					0	0	0			REV__nc|ENSG00000122966|O14578|CIT	REV__nc|ENSG00000122966|O14578|CIT	MULTI-MSMS	A375_MHC_IP_R1	1	465.1820068359375	2	464.782359	927.550165	-0.52529	-0.00024415	-0.43051	-0.00020009	-0.95581	-0.00044424	464.7822431383636	26.754	0.45243	26.754	26.575	27.027	0					11	8	2	0	0	0	0.27045	1	8038	8038		61.357	9.0891	1	4333400	+		2342	18225	1519	1536	2301	2301					0.08349180025709302
AKERVVQV	8	Unmodified	_AKERVVQV_					0	0	0			REV__nc|ENSG00000122966|O14578|CIT	REV__nc|ENSG00000122966|O14578|CIT	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	464.782359	927.550165	-0.52529	-0.00024415	-0.43051	-0.00020009	-0.95581	-0.00044424	464.7822431383636	26.754	0.45243	26.754	26.575	27.027	0	0.031869	-0.00019761	NaN	61.357	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4333400	+		2343	18225	1519	1536							0.08349180025709302
AKERVVQV	8	Unmodified	_AKERVVQV_					0	0	0			REV__nc|ENSG00000122966|O14578|CIT	REV__nc|ENSG00000122966|O14578|CIT	MULTI-MATCH	A375_MHC_IP_R2	2		2	464.782359	927.550165	-1.049	-0.00048755	0.1734	8.0592E-05	-0.87559	-0.00040696	464.7824555882953	26.03	0.30516	26.69	26.5	26.805	0.65992	-0.031869	0.00036376	NaN	61.357	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1782600	+		2344	18225	1519	1536							0.08349180025709302
AKFADDFSDS	10	Unmodified	_AKFADDFSDS_					0	0	0			REV__ENSG00000137200|ENST00000373451|CMTR1	REV__ENSG00000137200|ENST00000373451|CMTR1	MSMS	A375_MHC_IP_R2	2	551.6370849609375	2	551.738011	1101.46147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.44	1	102.2	101.7	102.7	0.76428								0	0	0	0.15207	1	38449	38449		13.906	1.3745	1		+		2345	18992	1520	1537	2302	2302					-0.08520324795290435
AKFLKKRRR	9	Unmodified	_AKFLKKRRR_					0	0	0		ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	MULTI-SECPEP	A375_MHC_IP_R2	2	1202.502197265625	1	1202.79565	1201.78838	0.19721	0.0002372	3.5536	0.0042743	3.7508	0.0045115	1202.8002316122202	123.04	0.35618	123.42	123.23	123.58	0.37661					8	6	2	0	0	0	0.81254	1	47150	47150		0.52476	0	1	37366000			2346	1736	1521	1538	2303	2303					0.19555585398620678
AKFRKIKQQIR	11	Unmodified	_AKFRKIKQQIR_					0	0	0			REV__ENSG00000171316|ENST00000423902|CHD7	REV__ENSG00000171316|ENST00000423902|CHD7	MSMS	A375_MHC_IP_R2	2	472.6833190917969	3	472.636772	1414.88849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.01	1	133.17	132.67	133.67	0.16487								0	0	0	0.16352	1	52327	52327		0.40827	0	1		+		2347	21060	1522	1539	2304	2304					0.1976377794178461
AKFTVFFILYL	11	Unmodified	_AKFTVFFILYL_					0	0	0			REV__SLC38A9|p.L328F|1|0.27|ENSG00000177058|chr5:55649285-55649285|G/A|missense_variant	REV__SLC38A9|p.L328F|1|0.27|ENSG00000177058|chr5:55649285-55649285|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	681.6273803710938	2	681.397025	1360.7795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.34	1	143.34	142.84	143.84	0								0	0	0	0.16334	1	54989	54989		1.3295	0	1		+		2348	27993	1523	1540	2305	2305					0.11353754198944443
AKGGALMA	8	Unmodified	_AKGGALMA_					0	0	0		nc|ENSG00000158865|Q8WWX8-5|SLC5A11;nc|ENSG00000158865|Q8WWX8-2|SLC5A11;ENSG00000158865|ENST00000424767|SLC5A11;nc|ENSG00000158865|Q8WWX8-4|SLC5A11;nc|ENSG00000158865|Q8WWX8-3|SLC5A11	nc|ENSG00000158865|Q8WWX8-5|SLC5A11	nc|ENSG00000158865|Q8WWX8-5|SLC5A11	MULTI-SECPEP	A375_MHC_IP_R2	2	359.4283447265625	2	359.699449	717.384345	-0.38703	-0.00013922	-2.9607	-0.0010649	-3.3477	-0.0012042	359.6979540614561	50.21	0.70902	50.964	50.753	51.462	0.75406					17	13	2	0	0	0	0.972	1	18858	18858		2.3027	1.5091	1	881160			2349	6338	1524	1541	2306	2306					0.01434830245352714
AKGGIIGF	8	Unmodified	_AKGGIIGF_					0	0	0			REV__MPDZ|p.G1669Cfs*20|1|0.13|ENSG00000107186|chr9:13122119-13122120|-/AGCCAGGCCGGCA|frameshift_variant	REV__MPDZ|p.G1669Cfs*20|1|0.13|ENSG00000107186|chr9:13122119-13122120|-/AGCCAGGCCGGCA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	382.12908935546875	2	381.729064	761.443575	-0.17875	-6.8233E-05	0.3508	0.00013391	0.17205	6.5678E-05	381.72909838963426	44.697	0.56129	45.466	45.188	45.75	0.7691					22	10	3	0	0	0	0.73517	1	16674	16674		34.187	0	1	5725300	+		2350	17476	1525	1542	2307	2307					0.05331049531196186
AKIAQAESILV	11	Unmodified	_AKIAQAESILV_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1;REV__ENST00000556791.1_1_14:102499420-102503925:+|nuORF	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R1	1	381.5966491699219	3	381.564168	1141.67067	0.52665	0.00020095	0.1699	6.4828E-05	0.69655	0.00026578	381.56392277234573	37.36	0.35748	37.36	37.198	37.556	0					15	6	3	0	0	0	0.72964	1	12618	12618		9.2438	0.79947	1	1294500	+		2351	22253;26112	1526	1543	2308	2308					0.10550543228669085
AKIIVEGRK	9	Unmodified	_AKIIVEGRK_					0	0	0			REV__tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1	REV__tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	507.7265625	2	507.326934	1012.63931	-0.54845	-0.00027825	-0.24981	-0.00012674	-0.79827	-0.00040498	507.32683355687215	142.76	0.40472	142.79	142.64	143.04	0.030746					10	7	2	0	0	0	0.73415	1	55848	55848		3.9444	0.66309	1	835820	+		2352	28769	1527	1544	2309	2309					0.13350014985235248
AKIIVEGRK	9	Unmodified	_AKIIVEGRK_					0	0	0			REV__tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1	REV__tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	507.326934	1012.63931	-0.74574	-0.00037833	-0.037711	-1.9132E-05	-0.78345	-0.00039746	507.3269020132995	142.73	0.45523	142.73	142.54	142.99	0	-0.029826	0.00016247	NaN	3.9444	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	866650	+		2353	28769	1527	1544							0.13350014985235248
AKITYNIKMNR	11	Unmodified	_AKITYNIKMNR_					0	0	0		nc|ENSG00000134779|Q68CL5-5|TPGS2	nc|ENSG00000134779|Q68CL5-5|TPGS2	nc|ENSG00000134779|Q68CL5-5|TPGS2	MSMS	A375_MHC_IP_R2	2	676.588134765625	2	676.379371	1350.74419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.82	1	105.59	105.09	106.09	0.76308								0	0	0	0.16273	1	39654	39654		4.5289	0	1				2354	14612	1528	1545	2310	2310					0.08284768399494169
AKIVHVPPL	9	Unmodified	_AKIVHVPPL_					0	0	0			REV__ENSG00000135723|ENST00000258201|FHOD1	REV__ENSG00000135723|ENST00000258201|FHOD1	MULTI-SECPEP	A375_MHC_IP_R1	1	487.7132263183594	2	487.313295	972.612037	-0.26595	-0.0001296	-0.15758	-7.6791E-05	-0.42353	-0.00020639	487.31315079559033	87.7	0.91573	87.7	87.34	88.256	0					24	17	2	0	0	0	0.52144	1	32224	32224		23.148	10.617	1	2010800	+		2355	18879	1529	1546	2311	2311					0.12463531444836917
AKIYKKGVKK	10	Unmodified	_AKIYKKGVKK_					0	0	0			REV__ENSG00000155307|ENST00000400566|SAMSN1	REV__ENSG00000155307|ENST00000400566|SAMSN1	MSMS	A375_MHC_IP_R2	2	581.7869262695312	2	581.887158	1161.75976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.23	1	147.25	146.75	147.75	0.019913								0	0	0	0.15628	1	57272	57272		0.45834	0.10771	1		+		2356	19921	1530	1547	2312	2312					0.18535422978834504
AKKKKKKKKG	10	Unmodified	_AKKKKKKKKG_					0	0	0		ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	MSMS	A375_MHC_IP_R1	1	391.2959289550781	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.094	1	39.094	38.594	39.594	0								0	0	0	0.15637	1	13326	13326		0.13989	0.017027	1				2357	11606	1531	1548	2313	2313					0.25026506998392506
AKKKKKKKKG	10	Unmodified	_AKKKKKKKKG_					0	0	0		ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	MSMS	A375_MHC_IP_R1	1	391.29351806640625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.07	1	73.07	72.57	73.57	0								0	0	0	0.1562	1	26596	26596		0.69767	0	1				2358	11606	1531	1548	2314	2314					0.25026506998392506
AKKKKKKKKG	10	Unmodified	_AKKKKKKKKG_					0	0	0		ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	MSMS	A375_MHC_IP_R2	2	391.2847900390625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.383	1	59.132	58.632	59.632	0.74894								0	0	0	0.15637	1	22089	22089		0.13989	0.13989	1				2359	11606	1531	1548	2315	2315					0.25026506998392506
AKKKRKLKKKA	11	Unmodified	_AKKKRKLKKKA_					0	0	0		ENSG00000157895|ENST00000288757|C12orf43	ENSG00000157895|ENST00000288757|C12orf43	ENSG00000157895|ENST00000288757|C12orf43	MSMS	A375_MHC_IP_R2	2	663.973876953125	2	663.974631	1325.93471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.273	1	79.016	78.516	79.516	0.74293								0	0	0	0.1636	1	29723	29723		0	0	1				2360	6276	1532	1549	2316	2316					0.28477842843858525
AKKLCGICV	9	Unmodified	_AKKLCGICV_					0	0	0		ENST00000228506.7_1_12:121137175-121137400:+|nuORF	ENST00000228506.7_1_12:121137175-121137400:+|nuORF	ENST00000228506.7_1_12:121137175-121137400:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	468.1633605957031	2	467.764266	933.513979	-0.57911	-0.00027089	-0.91142	-0.00042633	-1.4905	-0.00069722	467.7636462876578	126.26	0.40485	126.56	126.33	126.73	0.2951					12	7	2	0	0	0	0.77244	1	49391	49391		5.2307	2.9279	1	6794600			2361	10128	1533	1550	2317	2317					0.04456263532995308
AKKLLKKKR	9	Unmodified	_AKKLLKKKR_					0	0	0			REV__ENSG00000198173|ENST00000358047|FAM47C	REV__ENSG00000198173|ENST00000358047|FAM47C	MULTI-SECPEP	A375_MHC_IP_R2	2	556.176513671875	2	556.903143	1111.79173	-0.7274	-0.00040509	-1.4036	-0.00078169	-2.131	-0.0011868	557.4028218691944	83.522	0.15392	84.261	84.152	84.305	0.73962					4	2	2	0	0	0	0.81779	1	31761	31761		0.52476	0	1	425600	+		2362	22350	1534	1551	2318	2318					0.2403083545264053
AKKMDMKKLK	10	Unmodified	_AKKMDMKKLK_					0	0	0		ENSG00000121152|ENST00000240423|NCAPH;nc|ENSG00000121152|Q15003-2|NCAPH	ENSG00000121152|ENST00000240423|NCAPH	ENSG00000121152|ENST00000240423|NCAPH	MULTI-SECPEP	A375_MHC_IP_R1	1	610.5835571289062	2	610.864511	1219.71447	-0.60402	-0.00036898	-0.1916	-0.00011704	-0.79562	-0.00048602	610.8638945485405	134.45	0.35291	134.45	134.32	134.67	0					12	6	3	0	0	0	0.94516	1	51861	51861		3.5965	0	1	2803100			2363	3709	1535	1552	2319	2319					0.11340113129790552
AKKRVLRKA	9	Unmodified	_AKKRVLRKA_					0	0	0		ENSG00000101161|ENST00000266079|PRPF6;nc|ENSG00000101161|O94906-2|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	MSMS	A375_MHC_IP_R2	2	535.4796142578125	2	535.369467	1068.72438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.839	1	78.582	78.082	79.082	0.74293								0	0	0	0.15486	1	29558	29558		2.0598	0	1				2364	2259	1536	1553	2320	2320					0.19276805241702277
AKKSMEKVTTS	11	Unmodified	_AKKSMEKVTTS_					0	0	0			REV__nc|ENSG00000198947|P11532-4|DMD	REV__nc|ENSG00000198947|P11532-4|DMD	MULTI-MSMS	A375_MHC_IP_R1	1	404.6220397949219	3	403.888434	1208.64347	-0.73738	-0.00029782	-1.1307	-0.00045667	-1.8681	-0.00075449	403.8878493269415	29.038	0.25444	29.038	28.895	29.149	0					12	4	3	0	0	0	0.73064	1	9068	9068		8.2864	8.2864	1	2883500	+		2365	22456	1537	1554	2321	2321					0.04749691625966079
AKKUEUPSN	9	Unmodified	_AKKUEUPSN_					0	0	0		ENSG00000250722|ENST00000514985|SELENOP	ENSG00000250722|ENST00000514985|SELENOP	ENSG00000250722|ENST00000514985|SELENOP	MSMS	A375_MHC_IP_R1	1	538.1837158203125	2	538.164871	1074.31519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.12	1	109.12	108.62	109.62	0								0	0	0	0.15486	1	40026	40026		0	0	0				2366	9849	1538	1555	2322	2322					-0.21899649630563545
AKKUEUPSN	9	Unmodified	_AKKUEUPSN_					0	0	0		ENSG00000250722|ENST00000514985|SELENOP	ENSG00000250722|ENST00000514985|SELENOP	ENSG00000250722|ENST00000514985|SELENOP	MSMS	A375_MHC_IP_R1	1	538.1845703125	2	538.164871	1074.31519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.72	1	109.72	109.22	110.22	0								0	0	0	0.15486	1	40240	40240		0	0	0				2367	9849	1538	1555	2323	2323					-0.21899649630563545
AKKUEUPSN	9	Unmodified	_AKKUEUPSN_					0	0	0		ENSG00000250722|ENST00000514985|SELENOP	ENSG00000250722|ENST00000514985|SELENOP	ENSG00000250722|ENST00000514985|SELENOP	MSMS	A375_MHC_IP_R2	2	538.18408203125	2	538.164871	1074.31519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.76	1	109.51	109.01	110.01	0.74684								0	0	0	0.15486	1	41061	41061		0	0	0				2368	9849	1538	1555	2324	2324					-0.21899649630563545
AKLDDADGQ	9	Unmodified	_AKLDDADGQ_					0	0	0			REV__nc|ENSG00000070182|P11277-3|SPTB	REV__nc|ENSG00000070182|P11277-3|SPTB	MSMS	A375_MHC_IP_R1	1	466.6875305175781	2	466.719621	931.42469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.091	1	27.091	26.591	27.591	0								0	0	0	0.15486	1	8166	8166		8.7454	0.15213	1		+		2369	16568	1539	1556	2325	2325					-0.04376576621189088
AKLEADKVKL	10	Unmodified	_AKLEADKVKL_					0	0	0			REV__tr|U7SJ61|U7SJ61_FUSNUV-typeH+-transportingATPasesubunitEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02119PE=4SV=1	REV__tr|U7SJ61|U7SJ61_FUSNUV-typeH+-transportingATPasesubunitEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02119PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	557.72900390625	2	557.845156	1113.67576	-0.58343	-0.00032546	-0.068926	-3.845E-05	-0.65236	-0.00036391	557.8450187528481	58.895	0.61121	58.895	58.633	59.245	0					18	11	2	0	0	0	0.93566	1	21077	21077		10.8	10.8	1	2055200	+		2370	28226	1540	1557	2326	2326					0.12346847091271229
AKLELPKIL	9	Unmodified	_AKLELPKIL_					0	0	0		AKAP11|p.P339L|1|0.34|ENSG00000023516|chr13:42299762-42299762|C/T|missense_variant	AKAP11|p.P339L|1|0.34|ENSG00000023516|chr13:42299762-42299762|C/T|missense_variant	AKAP11|p.P339L|1|0.34|ENSG00000023516|chr13:42299762-42299762|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	512.6776123046875	2	512.841885	1023.66922	-0.40047	-0.00020538	0.15017	7.7012E-05	-0.25031	-0.00012837	512.8418763587721	55.956	0.55751	55.956	55.687	56.244	0					19	10	2	0	0	0	0.56537	1	20010	20010		22.736	5.6234	1	2610700			2371	96	1541	1558	2327	2327					0.15832953930566873
AKLHEEKTKE	10	Unmodified	_AKLHEEKTKE_					0	0	0		nc|ENSG00000152969|Q96N16-3|JAKMIP1;nc|ENSG00000152969|Q96N16-4|JAKMIP1;nc|ENSG00000152969|Q96N16|JAKMIP1;ENSG00000152969|ENST00000409021|JAKMIP1	nc|ENSG00000152969|Q96N16-3|JAKMIP1	nc|ENSG00000152969|Q96N16-3|JAKMIP1	MSMS	A375_MHC_IP_R2	2	404.9287109375	3	404.890944	1211.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.816	1	24.446	23.946	24.946	0.63014								0	0	0	0.15287	1	7724	7724		11.518	3.0736	1				2372	5995	1542	1559	2328	2328					0.05364167217908289
AKLRSINP	8	Unmodified	_AKLRSINP_					0	0	0		ENSG00000115904|ENST00000402219|SOS1	ENSG00000115904|ENST00000402219|SOS1	ENSG00000115904|ENST00000402219|SOS1	MULTI-SECPEP	A375_MHC_IP_R1	1	450.1768798828125	2	449.777077	897.5396	-0.00023879	-1.074E-07	-0.14848	-6.6785E-05	-0.14872	-6.6892E-05	449.7769654437402	71.208	0.66559	71.208	70.85	71.516	0					29	12	3	0	0	0	0.6033	1	25844	25844		32.786	0	1	5823900			2373	3349	1543	1560	2329	2329					0.08673197371285823
AKLTQNGIVQV	11	Unmodified	_AKLTQNGIVQV_					0	0	0			REV__ENSG00000134744|ENST00000257177|TUT4	REV__ENSG00000134744|ENST00000257177|TUT4	MULTI-SECPEP	A375_MHC_IP_R1	1	586.24755859375	2	585.845687	1169.67682	-0.52298	-0.00030638	4.0314	0.0023618	3.5084	0.0020554	585.8477290506796	133.64	0.25468	133.64	133.56	133.81	0					9	4	3	0	0	0	0.78118	1	51562	51562		26.268	11.43	1	6862500	+		2374	18796	1544	1561	2330	2330					0.09877061460156256
AKMYVKILKFP	11	Unmodified	_AKMYVKILKFP_					0	0	0		ENST00000542527.6_1_16:22092763-22092889:+|nuORF	ENST00000542527.6_1_16:22092763-22092889:+|nuORF	ENST00000542527.6_1_16:22092763-22092889:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	669.8031616210938	2	669.404327	1336.7941	-0.58551	-0.00039194	-0.67907	-0.00045457	-1.2646	-0.00084651	669.4040682738632	142.19	0.6575	142.22	141.77	142.43	0.030731					18	12	2	0	0	0	0.73809	1	55588	55588		1.1933	0.66858	1	1932100			2375	13302	1545	1562	2331	2331					0.1391750307541315
AKNAVLDWV	9	Unmodified	_AKNAVLDWV_					0	0	0			REV__ENST00000404802.7_1_22:37419824-37419929:+|nuORF	REV__ENST00000404802.7_1_22:37419824-37419929:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	508.6819152832031	2	508.282192	1014.54983	-0.72699	-0.00036952	-0.5584	-0.00028383	-1.2854	-0.00065334	508.2821976149691	73.098	0.71232	73.833	73.581	74.294	0.73541					24	13	2	0	0	0	0.55359	1	27740	27740		21.747	0	1	5553800	+		2376	24430	1546	1563	2332	2332					0.043137603058426066
AKNKRRSEFVG	11	Unmodified	_AKNKRRSEFVG_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MULTI-MSMS	A375_MHC_IP_R2	2	646.763916015625	2	646.36511	1290.71567	-0.48304	-0.00031222	0.64087	0.00041423	0.15783	0.00010202	646.365106036675	143.03	0.70773	143.06	142.64	143.34	0.030731					27	13	3	0	0	0	0.73679	1	55813	55813		5.2969	5.2969	1	2610600	+		2377	22098	1547	1564	2333	2333					0.08193786814535997
AKPDRKLW	8	Unmodified	_AKPDRKLW_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9800109863281	2	507.298176	1012.5818	-1.1216	-0.00056899	2.0447	0.0010373	0.92314	0.00046831	507.299107853914	58.918	0.35632	59.666	59.54	59.896	0.74714					10	6	2	0	0	0	0.97021	1	22255	22255		3.5965	3.5965	1	553360	+		2378	18422	1548	1565	2334	2334					0.07601172779641274
AKPLLQARFL	10	Unmodified	_AKPLLQARFL_					0	0	0			REV__nc|ENSG00000107862|Q92538-3|GBF1	REV__nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MSMS	A375_MHC_IP_R2	2	386.2574768066406	3	386.244881	1155.71281	-0.50758	-0.00019605	1.1209	0.00043293	0.6133	0.00023688	386.57938735967787	59.653	0.45573	60.4	60.148	60.603	0.74714					14	8	2	0	0	0	0.72061	1	22641	22641		3.0723	1.1659	1	752640	+		2379	17501	1549	1566	2335	2335					0.14118563427678055
AKPRSFDKP	9	Unmodified	_AKPRSFDKP_					0	0	0			REV__ULK4|p.S244F|2|0.38|ENSG00000168038|chr3:41916049-41916049|G/A|missense_variant	REV__ULK4|p.S244F|2|0.38|ENSG00000168038|chr3:41916049-41916049|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	523.692626953125	2	523.293091	1044.57163	-0.5312	-0.00027798	-2.2266	-0.0011652	-2.7578	-0.0014431	523.2917447543682	34.187	0.6072	34.187	33.95	34.557	0					26	11	3	0	0	0	0.73008	1	11230	11230		17.113	10.907	1	4522900	+		2380	28954	1550	1567	2336	2336					0.05112565054423612
AKPRYRARQRR	11	Unmodified	_AKPRYRARQRR_					0	0	0		ENSG00000187486|ENST00000339994|KCNJ11	ENSG00000187486|ENST00000339994|KCNJ11	ENSG00000187486|ENST00000339994|KCNJ11	MULTI-SECPEP	A375_MHC_IP_R1	1	487.35870361328125	3	486.62727	1456.85998	-0.5419	-0.0002637	-1.5755	-0.00076668	-2.1174	-0.0010304	486.62715903971895	135.93	0.81848	135.93	135.54	136.36	0					29	15	3	0	0	0	1.0005	1	52302	52302		2.4348	0.18206	1	3755600			2381	8826	1551	1568	2337	2337					0.149824730851833
AKPSKAGF	8	Unmodified	_AKPSKAGF_					0	0	0			REV__AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	REV__AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	402.9574890136719	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.222	1	22.222	21.722	22.722	0								0	0	0	0.16876	1	5942	5942		4.756	1.8668	1		+		2382	15345	1552	1569	2338	2338					0.039341480428561226
AKQKFQVV	8	Unmodified	_AKQKFQVV_					0	0	0		ENST00000433921.5_1_2:219503064-219516433:-|nuORF;nc|ENSG00000115568|P52746|ZNF142;ENSG00000115568|ENST00000411696|ZNF142	ENST00000433921.5_1_2:219503064-219516433:-|nuORF	ENST00000433921.5_1_2:219503064-219516433:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	474.68707275390625	2	474.287277	946.560001	-0.33662	-0.00015965	0.50637	0.00024016	0.16975	8.0512E-05	474.2874918195113	79.034	0.86886	79.034	78.756	79.625	0					42	16	4	0	0	0	0.23624	1	28811	28811		81.864	32.195	1	19792000			2383	3322	1553	1570	2339	2339					0.08458368031097052
AKQKFQVV	8	Unmodified	_AKQKFQVV_					0	0	0		ENST00000433921.5_1_2:219503064-219516433:-|nuORF;nc|ENSG00000115568|P52746|ZNF142;ENSG00000115568|ENST00000411696|ZNF142	ENST00000433921.5_1_2:219503064-219516433:-|nuORF	ENST00000433921.5_1_2:219503064-219516433:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	474.6868896484375	2	474.287277	946.560001	-0.53711	-0.00025475	0.39178	0.00018582	-0.14533	-6.893E-05	474.2874215263546	78.009	0.76696	78.752	78.416	79.183	0.74293					36	14	4	0	0	0	0.16366	1	29590	29590		81.864	32.195	1	21087000			2384	3322	1553	1570	2340	2340					0.08458368031097052
AKRGGTVH	8	Unmodified	_AKRGGTVH_					0	0	0		nc|ENSG00000102796|A0PJE2|DHRS12	nc|ENSG00000102796|A0PJE2|DHRS12	nc|ENSG00000102796|A0PJE2|DHRS12	MULTI-MSMS	A375_MHC_IP_R2	2	413.6380310058594	2	413.238119	824.461684	0.017201	7.1079E-06	0.19077	7.8832E-05	0.20797	8.594E-05	413.2381073757852	126.97	0.60702	127.23	127.06	127.66	0.26593					28	11	4	0	0	0	0.7773	1	49704	49704		4.756	0.42677	1	37508000			2385	14519	1554	1571	2341	2341					0.04243184505901354
AKRIKSKPH	9	Unmodified	_AKRIKSKPH_					0	0	0			REV__RRP12|p.P250S|1|0.14|ENSG00000052749|chr10:97390428-97390428|G/A|missense_variant	REV__RRP12|p.P250S|1|0.14|ENSG00000052749|chr10:97390428-97390428|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	355.5978698730469	3	355.561092	1063.66145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.74	1	36.74	36.24	37.24	0								0	0	0	0.15486	1	12323	12323		2.2828	0.19677	1		+		2386	27900	1555	1572	2342	2342					0.1321623945364081
AKRLKRRLEKM	11	Unmodified	_AKRLKRRLEKM_					0	0	0		ENST00000566987.5_1_16:71893923-71901814:-|nuORF;nc|ENSG00000102984|O75541-2|ZNF821;ENSG00000102984|ENST00000425432|ZNF821	ENST00000566987.5_1_16:71893923-71901814:-|nuORF	ENST00000566987.5_1_16:71893923-71901814:-|nuORF	MSMS	A375_MHC_IP_R2	2	714.9509887695312	2	714.95083	1427.88711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.53	1	143.56	143.06	144.06	0.024414								0	0	0	0.16354	1	56091	56091		0.30703	0	1				2387	2409	1556	1573	2343	2343					0.19027820581345622
AKRRIVKGCE	10	Unmodified	_AKRRIVKGCE_					0	0	0			REV__ENSG00000198556|ENST00000331410|ZNF789	REV__ENSG00000198556|ENST00000331410|ZNF789	MULTI-MSMS	A375_MHC_IP_R1	1	580.7399291992188	2	580.340049	1158.66555	-0.077885	-4.52E-05	-0.47404	-0.0002751	-0.55193	-0.0003203	580.3395657861251	111.05	0.5629	111.05	110.8	111.36	0					21	10	3	0	0	0	0.15514	1	40711	40711		53.833	21.527	1	3220000	+		2388	22381	1557	1574	2344	2344					0.09255960885047898
AKRRIVKGCE	10	Unmodified	_AKRRIVKGCE_					0	0	0			REV__ENSG00000198556|ENST00000331410|ZNF789	REV__ENSG00000198556|ENST00000331410|ZNF789	MULTI-MSMS	A375_MHC_IP_R2	2	580.7412719726562	2	580.340049	1158.66555	-0.13925	-8.0812E-05	-1.1331	-0.00065756	-1.2723	-0.00073838	580.3393282115394	110.14	0.56352	110.88	110.63	111.19	0.73692					16	10	2	0	0	0	0.27246	1	41537	41537		41.84	20.093	1	3985800	+		2389	22381	1557	1574	2345	2345					0.09255960885047898
AKRRIVKGCE	10	Unmodified	_AKRRIVKGCE_					0	0	0			REV__ENSG00000198556|ENST00000331410|ZNF789	REV__ENSG00000198556|ENST00000331410|ZNF789	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	580.340049	1158.66555	-0.077885	-4.52E-05	-0.47404	-0.0002751	-0.55193	-0.0003203	580.3395657861251	111.05	0.5629	111.05	110.8	111.36	0	0.087955	0.00021398	NaN	53.833	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3220000	+		2390	22381	1557	1574							0.09255960885047898
AKRRIVKGCE	10	Unmodified	_AKRRIVKGCE_					0	0	0			REV__ENSG00000198556|ENST00000331410|ZNF789	REV__ENSG00000198556|ENST00000331410|ZNF789	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	580.340049	1158.66555	-0.13925	-8.0812E-05	-1.1331	-0.00065756	-1.2723	-0.00073838	580.3393282115394	110.14	0.56352	110.88	110.63	111.19	0.73692	-0.087955	-0.00055094	NaN	53.833	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3985800	+		2391	22381	1557	1574							0.09255960885047898
AKRRQKREWV	10	Unmodified	_AKRRQKREWV_					0	0	0		ENSG00000134757|ENST00000257189|DSG3	ENSG00000134757|ENST00000257189|DSG3	ENSG00000134757|ENST00000257189|DSG3	MSMS	A375_MHC_IP_R1	1	678.74560546875	2	678.902194	1355.78984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.35	1	106.35	105.85	106.85	0								0	0	0	0.15435	1	39038	39038		6.7232	1.4263	1				2392	4603	1558	1575	2346	2346					0.1261717469674295
AKRRRRELRRL	11	Unmodified	_AKRRRRELRRL_					0	0	0			REV__nc|ENSG00000196557|O95180-2|CACNA1H	REV__nc|ENSG00000196557|O95180-2|CACNA1H	MSMS	A375_MHC_IP_R2	2	503.9222412109375	3	503.993953	1508.96003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.835	1	19.438	18.938	19.938	0.60308								0	0	0	0.16358	1	5622	5622		0.08335	0.08335	1		+		2393	27437	1559	1576	2347	2347					0.22590710419012794
AKSHSTNPLDQ	11	Unmodified	_AKSHSTNPLDQ_					0	0	0			REV__DSC1|p.P386S|1|0.74|ENSG00000134765|chr18:31142103-31142103|G/A|missense_variant	REV__DSC1|p.P386S|1|0.74|ENSG00000134765|chr18:31142103-31142103|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	400.59930419921875	3	399.866798	1196.57856	-0.28969	-0.00011584	-1.4905	-0.00059601	-1.7802	-0.00071185	400.2001526934447	53.324	0.8129	53.324	53.048	53.861	0					41	15	4	0	0	0	0.73135	1	19040	19040		3.8459	0.52627	1	3374500	+		2394	16036	1560	1577	2348	2348					-0.01186166855677584
AKSKRSRRRVP	11	Unmodified	_AKSKRSRRRVP_					0	0	0			REV__ENST00000413684.1_1_2:91935968-91936997:-|nuORF	REV__ENST00000413684.1_1_2:91935968-91936997:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	447.6816101074219	3	447.616371	1339.82728	-0.3258	-0.00014583	0.029433	1.3175E-05	-0.29636	-0.00013266	447.61635818997706	25.892	0.25217	25.892	25.714	25.966	0					6	4	2	0	0	0	0.73807	1	7645	7645		1.2148	0.588	1	2610400	+		2395	24496	1561	1578	2349	2349					0.1709626596234557
AKSLNYYLI	9	Unmodified	_AKSLNYYLI_					0	0	0			REV__GPR171|p.H287N|1|0.22|ENSG00000174946|chr3:151198528-151198528|G/T|missense_variant	REV__GPR171|p.H287N|1|0.22|ENSG00000174946|chr3:151198528-151198528|G/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	542.1683349609375	2	542.8055	1083.59645	-0.60773	-0.00032988	-0.0095877	-5.2042E-06	-0.61732	-0.00033508	542.8054136194573	61.59	0.40734	61.59	61.279	61.686	0					11	7	2	0	0	0	0.3213	1	22222	22222		13.042	0	1	3440900	+		2396	26700	1562	1579	2350	2350					0.05799200137153093
AKSQFRNMDL	10	Unmodified	_AKSQFRNMDL_					0	0	0			REV__ENSG00000163781|ENST00000260810|TOPBP1	REV__ENSG00000163781|ENST00000260810|TOPBP1	MSMS	A375_MHC_IP_R1	1	403.6327819824219	3	403.873007	1208.59719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.921	1	17.921	17.421	18.421	0								0	0	0	0.15628	1	4232	4232		0.15932	0	1		+		2397	20409	1563	1580	2351	2351					0.0012367151455237035
AKSQRWSIW	9	Unmodified	_AKSQRWSIW_					0	0	0			REV__nc|ENSG00000160145|O60229-5|KALRN	REV__nc|ENSG00000160145|O60229-5|KALRN	MULTI-SECPEP	A375_MHC_IP_R2	2	388.2765808105469	3	387.876969	1160.60908	-0.42012	-0.00016295	0.32739	0.00012699	-0.092724	-3.5965E-05	387.87694412630907	19.105	0.40093	19.708	19.483	19.884	0.60308					17	7	3	0	0	0	0.76106	1	5844	5844		9.544	0	1	2747100	+		2398	24294	1564	1581	2352	2352					0.03519656320031572
AKTGSWGGPGP	11	Unmodified	_AKTGSWGGPGP_					0	0	0		ENST00000564546.5_1_16:30076568-30077015:+|nuORF	ENST00000564546.5_1_16:30076568-30077015:+|nuORF	ENST00000564546.5_1_16:30076568-30077015:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	507.72625732421875	2	507.753798	1013.49304	-0.56496	-0.00028686	-0.38244	-0.00019418	-0.9474	-0.00048104	507.7538093881315	43.627	0.80897	44.397	43.974	44.783	0.76963					34	15	3	0	0	0	0.69231	1	16222	16222		16.149	4.5088	1	8351600			2399	13534	1565	1582	2353	2353					-0.013162872506654821
AKTKKKTKK	9	Unmodified	_AKTKKKTKK_					0	0	0			REV__nc|ENSG00000135541|Q8N157-2|AHI1	REV__nc|ENSG00000135541|Q8N157-2|AHI1	MSMS	A375_MHC_IP_R1	1	354.2659606933594	3	354.244881	1059.71281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.283	1	34.283	33.783	34.783	0								0	0	0	0.15486	1	11284	11284		2.086	1.0145	1		+		2400	18863	1566	1583	2354	2354					0.1853456342771551
AKTVFVEDMT	10	Unmodified	_AKTVFVEDMT_					0	0	0		nc|ENSG00000101557|P54578-3|USP14;ENSG00000101557|ENST00000261601|USP14;ENST00000583119.5_2_18:178935-196640:+|nuORF	nc|ENSG00000101557|P54578-3|USP14	nc|ENSG00000101557|P54578-3|USP14	MULTI-SECPEP	A375_MHC_IP_R2	2	380.97161865234375	3	380.858363	1139.55326	-0.0090951	-3.4639E-06	3.0132	0.0011476	3.0042	0.0011442	380.85929030888065	44.444	0.15257	45.214	45.086	45.239	0.7691					4	2	2	0	0	0	0.93405	1	16568	16568		7.9454	5.6626	1	325360			2401	2308	1567	1584	2355	2355					-0.01093357702461617
AKTWSLGLRQL	11	Unmodified	_AKTWSLGLRQL_					0	0	0			REV__ENSG00000196739|ENST00000356083|COL27A1	REV__ENSG00000196739|ENST00000356083|COL27A1	MULTI-SECPEP	A375_MHC_IP_R2	2	424.14520263671875	3	424.918945	1271.73501	-0.38839	-0.00016503	-0.082657	-3.5122E-05	-0.47104	-0.00020016	424.9188997596965	40.912	0.45708	41.687	41.438	41.895	0.77451					20	8	3	0	0	0	0.99165	1	15221	15221		12.228	2.077	1	4105800	+		2402	22228	1568	1585	2356	2356					0.11000743105455513
AKTYTYINPWD	11	Unmodified	_AKTYTYINPWD_					0	0	0			REV__nc|ENSG00000064763|Q96K12-2|FAR2	REV__nc|ENSG00000064763|Q96K12-2|FAR2	MSMS	A375_MHC_IP_R2	2	686.553955078125	2	686.33261	1370.65067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.387	1	79.132	78.632	79.632	0.74474								0	0	0	0.16273	1	29766	29766		4.5289	0.58447	1		+		2403	16483	1569	1586	2357	2357					-0.01983252501986499
AKWLRDRPSQ	10	Unmodified	_AKWLRDRPSQ_					0	0	0			REV__TESPA1|p.R284W|1|0.14|ENSG00000135426|chr12:54963048-54963048|G/A|missense_variant	REV__TESPA1|p.R284W|1|0.14|ENSG00000135426|chr12:54963048-54963048|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	419.966796875	3	419.566794	1255.67855	-0.3732	-0.00015658	-0.19014	-7.9777E-05	-0.56334	-0.00023636	419.56675558974194	23.524	0.3536	24.155	23.878	24.232	0.63014					10	6	2	0	0	0	0.93733	1	7619	7619		3.0723	3.0723	1	4507600	+		2404	28096	1570	1587	2358	2358					0.060941152687973954
AKWRRNHNHIW	11	Unmodified	_AKWRRNHNHIW_					0	0	0		ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000514047.1_1_5:24170479-24171004:+|nuORF	ENSG00000166971|ENST00000394657|AKTIP	ENSG00000166971|ENST00000394657|AKTIP	MULTI-MSMS	A375_MHC_IP_R2	2	506.6658935546875	3	506.604354	1516.79123	-0.6301	-0.00031921	1.0467	0.00053028	0.41663	0.00021107	506.60478301958864	84.549	0.45415	85.285	85.069	85.523	0.73602					19	8	3	0	0	0	0.73647	1	32219	32219		1.1098	0.6038	1	1792200			2405	7144	1571	1588	2359	2359					0.05350808785510708
AKWRRNHNHIW	11	Unmodified	_AKWRRNHNHIW_					0	0	0		ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000514047.1_1_5:24170479-24171004:+|nuORF	ENSG00000166971|ENST00000394657|AKTIP	ENSG00000166971|ENST00000394657|AKTIP	MULTI-MATCH	A375_MHC_IP_R1	1		3	506.604354	1516.79123	-0.58296	-0.00029533	0.5761	0.00029185	-0.0068641	-3.4774E-06	506.6045206511807	85.372	0.50917	85.372	85.107	85.616	0	0.043574	-0.00020705	NaN	1.1098	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1837200			2406	7144	1571	1588							0.05350808785510708
AKYIERRYARK	11	Unmodified	_AKYIERRYARK_					0	0	0		nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	nc|ENSG00000151693|O43150-2|ASAP2	nc|ENSG00000151693|O43150-2|ASAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	484.6816101074219	3	485.284398	1452.83137	-0.5923	-0.00028744	1.0905	0.0005292	0.49819	0.00024176	485.28484244261915	26.523	0.25318	26.523	26.423	26.677	0					5	4	2	0	0	0	1.0005	1	7935	7935		2.4348	0.18206	1	1176200			2407	5921	1572	1589	2360	2360					0.12306310665394449
AKYRRIKKLTA	11	Unmodified	_AKYRRIKKLTA_					0	0	0			REV__nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	REV__nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	MSMS	A375_MHC_IP_R2	2	674.407470703125	2	674.432796	1346.85104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.17	1	143.2	142.7	143.7	0.030731								0	0	0	0.16337	1	55960	55960		1.1933	0	1		+		2408	20784	1573	1590	2361	2361					0.1914868667618066
ALAAALAHI	9	Unmodified	_ALAAALAHI_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000107625|ENST00000373585|DDX50	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-SECPEP	A375_MHC_IP_R1	1	425.6365661621094	2	425.760895	849.507237	-0.094737	-4.0335E-05	-0.18128	-7.7181E-05	-0.27601	-0.00011752	425.76081348310026	73.158	0.65793	73.158	72.83	73.488	0					28	12	3	0	0	0	0.030079	1	26667	26667		79.935	34.185	1	8867900			2409	6987	1574	1591	2362	2362					0.0764640996825392
ALAAALAHI	9	Unmodified	_ALAAALAHI_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000107625|ENST00000373585|DDX50	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	A375_MHC_IP_R2	2	426.30145263671875	2	425.760895	849.507237	-0.38216	-0.00016271	-0.12813	-5.4555E-05	-0.5103	-0.00021726	425.76081683807996	72.162	0.65806	72.896	72.618	73.276	0.73421					28	12	3	0	0	0	0.12743	1	27294	27294		45.75	17.577	1	8243700			2410	6987	1574	1591	2363	2363					0.0764640996825392
ALAAALALTA	10	Unmodified	_ALAAALALTA_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3;ENST00000475306.1_1_1:24410803-24434643:-|nuORF	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-MSMS	A375_MHC_IP_R1	1	885.9379272460938	1	885.540394	884.533118	-0.59005	-0.00052251	-0.96797	-0.00085717	-1.558	-0.0013797	885.5391267073201	147.73	0.29335	147.73	147.6	147.9	0					43	22	3	0	0	0	0.72747	1	56428	56428		0	0	1	273030			2411	5323	1575	1592	2364	2364					0.08623259419857732
ALAAALALTA	10	Unmodified	_ALAAALALTA_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3;ENST00000475306.1_1_1:24410803-24434643:-|nuORF	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	885.540394	884.533118	-0.30756	-0.00027236	-1.1052	-0.00097868	-1.4127	-0.001251	885.5390671500018	147.75	0.25894	147.77	147.64	147.9	0.018707	0.020483	-6.1225E-05	NaN	0	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282800			2412	5323	1575	1592							0.08623259419857732
ALAAGQRR	8	Unmodified	_ALAAGQRR_					0	0	0			REV__ENSG00000130287|ENST00000252575|NCAN	REV__ENSG00000130287|ENST00000252575|NCAN	MULTI-MSMS	A375_MHC_IP_R1	1	422.1510925292969	2	421.751393	841.488233	0.41665	0.00017572	-0.32645	-0.00013768	0.090206	3.8044E-05	421.75118787898435	127.31	0.40639	127.31	127.11	127.52	0					12	7	2	0	0	0	0.7779	1	48785	48785		2.5775	0	1	23767000	+		2413	18529	1576	1593	2365	2365					0.06114873397223164
ALAALHVTL	9	Unmodified	_ALAALHVTL_					0	0	0		ENSG00000143570|ENST00000356205|SLC39A1	ENSG00000143570|ENST00000356205|SLC39A1	ENSG00000143570|ENST00000356205|SLC39A1	MULTI-SECPEP	A375_MHC_IP_R1	1	455.1818542480469	2	454.781828	907.549102	-0.38105	-0.0001733	0.22579	0.00010269	-0.15526	-7.061E-05	454.781932240119	84.079	0.45495	84.079	83.837	84.292	0					14	8	2	0	0	0	0.025883	1	30809	30809		89.427	25.864	1	1553100			2414	5410	1577	1594	2366	2366					0.09162965656810229
ALAALHVTL	9	Unmodified	_ALAALHVTL_					0	0	0		ENSG00000143570|ENST00000356205|SLC39A1	ENSG00000143570|ENST00000356205|SLC39A1	ENSG00000143570|ENST00000356205|SLC39A1	MULTI-MATCH	A375_MHC_IP_R2	2		2	454.781828	907.549102	-0.20435	-9.2936E-05	-0.016877	-7.6752E-06	-0.22123	-0.00010061	454.78174385215794	83.083	0.40329	83.822	83.544	83.947	0.73962	-0.12823	-0.00011323	NaN	89.427	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1627900			2415	5410	1577	1594							0.09162965656810229
ALAAVVTEV	9	Unmodified	_ALAAVVTEV_					0	0	0		DDX3X|p.A68Rfs*153|1|0.89|ENSG00000215301|chrX:41341534-41341534|G/-|frameshift_variant	DDX3X|p.A68Rfs*153|1|0.89|ENSG00000215301|chrX:41341534-41341534|G/-|frameshift_variant	DDX3X|p.A68Rfs*153|1|0.89|ENSG00000215301|chrX:41341534-41341534|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	436.64764404296875	2	436.758018	871.501483	-0.35069	-0.00015317	-0.10009	-4.3715E-05	-0.45078	-0.00019688	436.7578416867154	84.834	0.45995	84.834	84.647	85.107	0					11	8	2	0	0	0	0.32388	1	31133	31133		34.187	11.039	1	787420			2416	726	1578	1595	2367	2367					0.060592666659431416
ALAAVVTEV	9	Unmodified	_ALAAVVTEV_					0	0	0		DDX3X|p.A68Rfs*153|1|0.89|ENSG00000215301|chrX:41341534-41341534|G/-|frameshift_variant	DDX3X|p.A68Rfs*153|1|0.89|ENSG00000215301|chrX:41341534-41341534|G/-|frameshift_variant	DDX3X|p.A68Rfs*153|1|0.89|ENSG00000215301|chrX:41341534-41341534|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	437.1579284667969	2	436.758018	871.501483	-0.22117	-9.6598E-05	0.23379	0.00010211	0.012614	5.5092E-06	436.75803052426454	83.964	0.56451	84.703	84.407	84.971	0.73962					14	10	2	0	0	0	0.025922	1	31929	31929		78.445	21.903	1	1618100			2417	726	1578	1595	2368	2368					0.060592666659431416
ALADCCWW	8	Unmodified	_ALADCCWW_					0	0	0		ENST00000383463.8_1_3:129024401-129024683:+|nuORF	ENST00000383463.8_1_3:129024401-129024683:+|nuORF	ENST00000383463.8_1_3:129024401-129024683:+|nuORF	MSMS	A375_MHC_IP_R1	1	484.1739807128906	2	484.193674	966.372794	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.395	1	68.395	67.895	68.895	0								0	0	0	0.16876	1	24796	24796		6.3541	0	1				2418	11389	1579	1596	2369	2369					-0.1117373484030395
ALADEPPSL	9	Unmodified	_ALADEPPSL_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R1	1	456.6813659667969	2	456.737283	911.460012	-0.1405	-6.4171E-05	0.25971	0.00011862	0.11921	5.445E-05	456.7372785457157	71.102	1.1241	71.102	70.392	71.516	0					36	21	2	0	0	0	0.11296	1	25869	25869		48.346	6.2513	1	1510500			2419	7807	1580	1597	2370	2370					0.0007408590662407732
ALADEPPSL	9	Unmodified	_ALADEPPSL_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R2	2	456.6812438964844	2	456.737283	911.460012	-0.24252	-0.00011077	-0.16814	-7.6794E-05	-0.41065	-0.00018756	456.7371705807407	70.504	1.2663	71.239	70.54	71.806	0.73421					43	24	2	0	0	0	0.05754	1	26691	26691		61.357	13.012	1	2621000			2420	7807	1580	1597	2371	2371					0.0007408590662407732
ALADGVPVA	9	Unmodified	_ALADGVPVA_					0	0	0		ENSG00000254470|ENST00000532090|AP5B1	ENSG00000254470|ENST00000532090|AP5B1	ENSG00000254470|ENST00000532090|AP5B1	MULTI-SECPEP	A375_MHC_IP_R2	2	812.299072265625	1	812.451245	811.443968	-0.79596	-0.00064667	0.30064	0.00024426	-0.49531	-0.00040242	812.4513647744842	64.493	0.66199	65.234	64.902	65.564	0.74022					19	12	2	0	0	0	0.3213	1	24501	24501		46.021	15.796	1	8306300			2421	9877	1581	1598	2372	2372					0.030704244603612096
ALADGVPVAL	10	Unmodified	_ALADGVPVAL_					0	0	0		ENSG00000254470|ENST00000532090|AP5B1	ENSG00000254470|ENST00000532090|AP5B1	ENSG00000254470|ENST00000532090|AP5B1	MULTI-SECPEP	A375_MHC_IP_R1	1	925.3739013671875	1	925.535309	924.528032	0.063821	5.9068E-05	0.05161	4.7767E-05	0.11543	0.00010684	925.5352458339555	105.79	0.86519	105.79	105.45	106.32	0					36	16	3	0	0	0	0.027166	1	38798	38798		100.37	45.598	1	16275000			2422	9877	1582	1599	2373	2373					0.06274955557273643
ALADGVPVAL	10	Unmodified	_ALADGVPVAL_					0	0	0		ENSG00000254470|ENST00000532090|AP5B1	ENSG00000254470|ENST00000532090|AP5B1	ENSG00000254470|ENST00000532090|AP5B1	MULTI-SECPEP	A375_MHC_IP_R2	2	924.8845825195312	1	925.535309	924.528032	-0.23639	-0.00021879	-0.23922	-0.00022141	-0.47562	-0.0004402	925.5347986443562	104.93	0.76228	105.69	105.31	106.07	0.76308					30	14	3	0	0	0	0.52461	1	39778	39778		29.082	5.061	1	17460000			2423	9877	1582	1599	2374	2374					0.06274955557273643
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-SECPEP	A375_MHC_IP_R1	1	451.1610412597656	2	450.761092	899.507631	-0.39298	-0.00017714	0.011206	5.0511E-06	-0.38177	-0.00017209	450.76103552659583	32.712	1.0154	32.712	32.024	33.04	0					32	19	4	0	0	0	0.011236	1	10573	10573		106.94	32.517	1	15161000			2424	2160	1583	1600	2375	2375					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	A375_MHC_IP_R2	2	451.1607971191406	2	450.761092	899.507631	-0.29381	-0.00013244	0.11403	5.1398E-05	-0.17978	-8.1039E-05	450.7610816564279	32.029	0.86312	32.765	32.198	33.061	0.73691					27	16	3	0	0	0	0.012843	1	11335	11335		92.653	28.417	1	17535000			2425	2160	1583	1600	2376	2376					0.053857848974644185
ALADHPFPV	9	Unmodified	_ALADHPFPV_					0	0	0			REV__nc|ENSG00000140332|Q04726-2|TLE3	REV__nc|ENSG00000140332|Q04726-2|TLE3	MULTI-MSMS	A375_MHC_IP_R2	2	483.65777587890625	2	483.75581	965.497067	-0.48423	-0.00023425	0.24471	0.00011838	-0.23952	-0.00011587	483.7560766625212	68.916	1.013	69.651	69.221	70.234	0.73511					38	19	3	0	0	0	0.60623	1	26278	26278		14.582	1.5392	1	4068300	+		2426	19205	1584	1601	2377	2377					0.012938022430375895
ALADIVWRA	9	Unmodified	_ALADIVWRA_					0	0	0		ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	MULTI-MSMS	A375_MHC_IP_R1	1	507.8481750488281	2	507.790184	1013.56581	-0.4737	-0.00024054	-0.38669	-0.00019636	-0.86039	-0.0004369	507.7899961827364	91.478	0.85892	91.478	91.148	92.007	0					38	16	4	0	0	0	0.037683	1	33677	33677		69.105	29.148	1	13036000			2427	2670	1585	1602	2378	2378					0.05957466542736256
ALADIVWRA	9	Unmodified	_ALADIVWRA_					0	0	0		ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	MULTI-MSMS	A375_MHC_IP_R2	2	508.719482421875	2	507.790184	1013.56581	-0.63673	-0.00032332	-0.21226	-0.00010778	-0.84899	-0.00043111	507.79002442515815	90.697	0.76042	91.431	91.007	91.767	0.73451					39	14	4	0	0	0	0.11629	1	34469	34469		47.749	22.349	1	10279000			2428	2670	1585	1602	2379	2379					0.05957466542736256
ALADKISIL	9	Unmodified	_ALADKISIL_					0	0	0		ENST00000381055.7_1_5:64447501-64447618:-|nuORF	ENST00000381055.7_1_5:64447501-64447618:-|nuORF	ENST00000381055.7_1_5:64447501-64447618:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	473.68560791015625	2	472.294768	942.574983	0.031238	1.4754E-05	-0.1022	-4.8267E-05	-0.070958	-3.3513E-05	472.2946229992073	69.66	1.7289	69.66	69.173	70.902	0					97	33	5	0	0	0	0.22528	1	25379	25379		36.127	0	1	87934000			2429	11365	1586	1603	2380	2380					0.10139815108436778
ALADLQEAV	9	Unmodified	_ALADLQEAV_					0	0	0		ENSG00000115183|ENST00000263635|TANC1;nc|ENSG00000115183|Q9C0D5-2|TANC1;ENST00000470074.1_1_2:160076105-160087520:+|nuORF	ENSG00000115183|ENST00000263635|TANC1	ENSG00000115183|ENST00000263635|TANC1	MULTI-MSMS	A375_MHC_IP_R1	1	465.65008544921875	2	465.250557	928.486562	-0.36123	-0.00016806	-0.22197	-0.00010327	-0.5832	-0.00027133	465.2504683467828	80.374	0.96429	80.374	80.034	80.999	0					28	18	3	0	0	0	0.050162	1	29330	29330		64.236	0	1	3146100			2430	3279	1587	1604	2381	2381					0.019457747979458873
ALADLQEAV	9	Unmodified	_ALADLQEAV_					0	0	0		ENSG00000115183|ENST00000263635|TANC1;nc|ENSG00000115183|Q9C0D5-2|TANC1;ENST00000470074.1_1_2:160076105-160087520:+|nuORF	ENSG00000115183|ENST00000263635|TANC1	ENSG00000115183|ENST00000263635|TANC1	MULTI-MSMS	A375_MHC_IP_R2	2	465.64990234375	2	465.250557	928.486562	-0.56059	-0.00026082	-0.55724	-0.00025926	-1.1178	-0.00052007	465.2504328504765	79.662	0.71194	80.407	80.047	80.759	0.74473					25	13	3	0	0	0	0.0097736	1	30206	30206		112.59	0	1	2916700			2431	3279	1587	1604	2382	2382					0.019457747979458873
ALAEALKEV	9	Unmodified	_ALAEALKEV_					0	0	0		ENSG00000144736|ENST00000325599|SHQ1;nc|ENSG00000144736|Q6PI26-2|SHQ1;ENST00000437111.1_1_10:52389508-52390123:-|nuORF	ENSG00000144736|ENST00000325599|SHQ1;ENST00000437111.1_1_10:52389508-52390123:-|nuORF	ENSG00000144736|ENST00000325599|SHQ1	MULTI-MSMS	A375_MHC_IP_R1	1	472.6761779785156	2	472.276575	942.538597	-0.43612	-0.00020597	-0.80399	-0.00037971	-1.2401	-0.00058568	472.27594565922124	59.27	2.0839	59.27	58.126	60.21	0					75	40	4	0	0	0	0.0098859	1	21278	21278		117.76	44.793	1	28899000			2432	5511;11935	1588	1605	2383	2383					0.06502938211701803
ALAEALKEV	9	Unmodified	_ALAEALKEV_					0	0	0		ENSG00000144736|ENST00000325599|SHQ1;nc|ENSG00000144736|Q6PI26-2|SHQ1;ENST00000437111.1_1_10:52389508-52390123:-|nuORF	ENSG00000144736|ENST00000325599|SHQ1;ENST00000437111.1_1_10:52389508-52390123:-|nuORF	ENSG00000144736|ENST00000325599|SHQ1	MULTI-MSMS	A375_MHC_IP_R2	2	472.67535400390625	2	472.276575	942.538597	-0.87943	-0.00041534	-0.26852	-0.00012682	-1.148	-0.00054215	472.27635069732895	58.36	0.91297	59.109	58.578	59.491	0.74894					42	17	4	0	0	0	0.0098859	1	22039	22039		117.76	44.793	1	29081000			2433	5511;11935	1588	1605	2384	2384					0.06502938211701803
ALAEEVEQV	9	Unmodified	_ALAEEVEQV_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MULTI-MSMS	A375_MHC_IP_R1	1	494.6531066894531	2	494.253297	986.492041	-0.24769	-0.00012242	0.26987	0.00013338	0.02218	1.0962E-05	494.2532255016847	62.689	0.61443	62.689	62.403	63.018	0					30	11	3	0	0	0	0.033557	1	22611	22611		71.922	2.8174	1	11877000			2434	4134	1589	1606	2385	2385					-0.0017454641023277873
ALAEEVEQV	9	Unmodified	_ALAEEVEQV_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MULTI-MSMS	A375_MHC_IP_R2	2	494.6530456542969	2	494.253297	986.492041	-0.72355	-0.00035762	0.077599	3.8354E-05	-0.64595	-0.00031926	494.25313854620873	61.982	0.75948	62.724	62.421	63.18	0.74263					34	14	4	0	0	0	0.0090669	1	23461	23461		100.37	22.387	1	10511000			2435	4134	1589	1606	2386	2386					-0.0017454641023277873
ALAEIAKAEL	10	Unmodified	_ALAEIAKAEL_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-SECPEP	A375_MHC_IP_R1	1	515.2022094726562	2	514.802957	1027.59136	-0.66203	-0.00034082	0.27456	0.00014134	-0.38747	-0.00019947	514.8029784085699	68.551	1.165	68.551	67.804	68.969	0					16	9	2	0	0	0	0.31583	1	24881	24881		61.09	13.341	1	2583600			2436	3405	1590	1607	2387	2387					0.0786689627452688
ALAEIAKAEL	10	Unmodified	_ALAEIAKAEL_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-MSMS	A375_MHC_IP_R2	2	515.20263671875	2	514.802957	1027.59136	-0.71935	-0.00037033	0.19264	9.9172E-05	-0.52671	-0.00027115	514.8030247728283	67.673	0.81508	68.41	68.104	68.919	0.73631					19	10	3	0	0	0	0.084058	1	25646	25646		67.081	25.125	1	2196800			2437	3405	1590	1607	2388	2388					0.0786689627452688
ALAEITEMV	9	Oxidation (M)	_ALAEITEM(Oxidation (M))V_		ALAEITEM(1)V		ALAEITEM(85)V	0	0	1		nc|ENSG00000152767|Q9Y4F1-2|FARP1;ENSG00000152767|ENST00000319562|FARP1	nc|ENSG00000152767|Q9Y4F1-2|FARP1	nc|ENSG00000152767|Q9Y4F1-2|FARP1	MULTI-SECPEP	A375_MHC_IP_R1	1	497.1517639160156	2	496.752075	991.489598	-0.42411	-0.00021068	0.0028765	1.4289E-06	-0.42124	-0.00020925	496.7521390749071	76.151	0.65572	76.151	75.664	76.319	0					20	12	2	0	0	0	0.050875	1	27794	27794		85.357	53.051	1	1240800			2438	5982	1591	1608	2389	2389		320			-0.006487181395414154
ALAEITEMV	9	Oxidation (M)	_ALAEITEM(Oxidation (M))V_		ALAEITEM(1)V		ALAEITEM(67)V	0	0	1		nc|ENSG00000152767|Q9Y4F1-2|FARP1;ENSG00000152767|ENST00000319562|FARP1	nc|ENSG00000152767|Q9Y4F1-2|FARP1	nc|ENSG00000152767|Q9Y4F1-2|FARP1	MULTI-SECPEP	A375_MHC_IP_R2	2	497.1520080566406	2	496.752075	991.489598	-0.51323	-0.00025495	-0.068625	-3.409E-05	-0.58186	-0.00028904	496.7519819090675	75.101	0.86359	75.839	75.57	76.433	0.73751					21	16	2	0	0	0	0.061132	1	28662	28662		67.344	27.387	1	2030400			2439	5982	1591	1608	2390	2390		320			-0.006487181395414154
ALAELLHGA	9	Unmodified	_ALAELLHGA_					0	0	0		nc|ENSG00000174938|Q6UXD5-6|SEZ6L2;nc|ENSG00000174938|Q6UXD5-2|SEZ6L2;nc|ENSG00000174938|Q6UXD5-3|SEZ6L2;nc|ENSG00000174938|Q6UXD5|SEZ6L2;ENSG00000174938|ENST00000617533|SEZ6L2;nc|ENSG00000174938|Q6UXD5-4|SEZ6L2	nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	MULTI-SECPEP	A375_MHC_IP_R1	1	448.1560974121094	2	447.75581	893.497067	-0.016817	-7.5298E-06	-0.03624	-1.6227E-05	-0.053057	-2.3757E-05	447.7558201423643	68.775	0.96487	68.775	68.361	69.326	0					38	18	3	0	0	0	0.089948	1	24923	24923		60.39	20.432	1	8577000			2440	7914	1592	1609	2391	2391					0.04605802243054313
ALAELLHGA	9	Unmodified	_ALAELLHGA_					0	0	0		nc|ENSG00000174938|Q6UXD5-6|SEZ6L2;nc|ENSG00000174938|Q6UXD5-2|SEZ6L2;nc|ENSG00000174938|Q6UXD5-3|SEZ6L2;nc|ENSG00000174938|Q6UXD5|SEZ6L2;ENSG00000174938|ENST00000617533|SEZ6L2;nc|ENSG00000174938|Q6UXD5-4|SEZ6L2	nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	MULTI-MSMS	A375_MHC_IP_R2	2	447.74664306640625	2	447.75581	893.497067	-0.27447	-0.00012289	-0.27506	-0.00012316	-0.54953	-0.00024605	447.7557565934558	67.804	1.2212	68.539	68.051	69.272	0.73511					41	23	3	0	0	0	0.40079	2	25818	25818;25874		24.674	7.7316	1	10805000			2441	7914	1592	1609	2392;2393	2392					0.04605802243054313
ALAERLDIV	9	Unmodified	_ALAERLDIV_					0	0	0		ENSG00000189114|ENST00000433642|BLOC1S3	ENSG00000189114|ENST00000433642|BLOC1S3	ENSG00000189114|ENST00000433642|BLOC1S3	MULTI-SECPEP	A375_MHC_IP_R1	1	500.694580078125	2	500.295299	998.576045	-0.36605	-0.00018313	-0.58096	-0.00029065	-0.94701	-0.00047378	500.2950275752555	73.21	0.30477	73.21	73.082	73.386	0					8	5	2	0	0	0	0.33896	1	26675	26675		47.594	7.6447	1	1591800			2442	8961	1593	1610	2394	2394					0.07670029477321805
ALAETGIAV	9	Unmodified	_ALAETGIAV_					0	0	0		ENST00000433877.6_1_12:122990076-123005058:-|nuORF;nc|ENSG00000111011|Q7L4I2-2|RSRC2;RSRC2|p.G373Lfs*31|1|0.07|ENSG00000111011|chr12:122506842-122506843|-/AAATCTCCACCTGAAAATTCCGCAAAAAG|frameshift_variant;ENSG00000111011|ENST00000331738|RSRC2;ENST00000531389.2_1_12:122991779-122992905:-|nuORF;ENST00000392442.6_1_12:122990076-122998315:-|nuORF	ENST00000433877.6_1_12:122990076-123005058:-|nuORF	ENST00000433877.6_1_12:122990076-123005058:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	844.8776245117188	1	844.47746	843.470183	-0.15513	-0.000131	0.1591	0.00013436	0.0039721	3.3544E-06	844.4776085074521	72.296	0.45575	72.296	72.018	72.474	0					12	8	2	0	0	0	0.050162	1	26268	26268		64.236	6.765	1	2633800			2443	2961	1594	1611	2395	2395					0.04218693631844417
ALAETGIAV	9	Unmodified	_ALAETGIAV_					0	0	0		ENST00000433877.6_1_12:122990076-123005058:-|nuORF;nc|ENSG00000111011|Q7L4I2-2|RSRC2;RSRC2|p.G373Lfs*31|1|0.07|ENSG00000111011|chr12:122506842-122506843|-/AAATCTCCACCTGAAAATTCCGCAAAAAG|frameshift_variant;ENSG00000111011|ENST00000331738|RSRC2;ENST00000531389.2_1_12:122991779-122992905:-|nuORF;ENST00000392442.6_1_12:122990076-122998315:-|nuORF	ENST00000433877.6_1_12:122990076-123005058:-|nuORF	ENST00000433877.6_1_12:122990076-123005058:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	844.47746	843.470183	-0.96634	-0.00081606	0.086188	7.2783E-05	-0.88016	-0.00074327	844.4774434237682	71.454	0.45551	72.188	71.908	72.364	0.73421	-0.053909	-2.2143E-05	NaN	64.236	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3155000			2444	2961	1594	1611							0.04218693631844417
ALAEVFHQL	9	Unmodified	_ALAEVFHQL_					0	0	0		ENST00000605862.4_1_7:128214806-128231910:+|nuORF;ENST00000479267.2_3_7:128218036-128231910:+|nuORF	ENST00000605862.4_1_7:128214806-128231910:+|nuORF	ENST00000605862.4_1_7:128214806-128231910:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	514.6819458007812	2	514.282192	1026.54983	-0.51093	-0.00026276	-0.30358	-0.00015613	-0.81452	-0.00041889	514.2820486142692	83.263	0.50937	83.263	83.125	83.634	0					15	9	2	0	0	0	0.4261	1	30488	30488		37.974	7.3375	1	1637200			2445	12470	1595	1612	2396	2396					0.03761760305860662
ALAGDQPSV	9	Unmodified	_ALAGDQPSV_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	MULTI-SECPEP	A375_MHC_IP_R1	1	429.6216125488281	2	429.2218	856.429047	-0.24296	-0.00010429	0.12174	5.2254E-05	-0.12122	-5.2031E-05	429.2218381723313	40.988	0.60557	40.988	40.66	41.266	0					19	11	2	0	0	0	0.14422	1	14093	14093		61.357	23.206	1	4260900			2446	9093;12651	1596	1613	2397	2397					-0.004910674076086252
ALAGDQPSV	9	Unmodified	_ALAGDQPSV_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	MULTI-SECPEP	A375_MHC_IP_R2	2	429.6217956542969	2	429.2218	856.429047	-0.26864	-0.00011531	-0.018901	-8.1126E-06	-0.28754	-0.00012342	429.22173687838483	40.282	0.86358	41.056	40.676	41.54	0.77451					25	16	2	0	0	0	0.39388	1	14876	14876		32.305	9.1571	1	8425700			2447	9093;12651	1596	1613	2398	2398					-0.004910674076086252
ALAGNWAM	8	Unmodified	_ALAGNWAM_					0	0	0		ENST00000466953.6_1_1:177929778-177937161:-|nuORF	ENST00000466953.6_1_1:177929778-177937161:-|nuORF	ENST00000466953.6_1_1:177929778-177937161:-|nuORF	MSMS	A375_MHC_IP_R1	1	417.1375732421875	2	417.202356	832.390159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.431	1	35.431	34.931	35.931	0								0	0	0	0.16876	1	11783	11783		11.114	1.767	1				2448	12269	1597	1614	2399	2399					-0.032740712429927044
ALAGPVARF	9	Unmodified	_ALAGPVARF_					0	0	0			REV__ELN|p.G581R|1|0.29|ENSG00000049540|chr7:74060408-74060408|G/A|missense_variant	REV__ELN|p.G581R|1|0.29|ENSG00000049540|chr7:74060408-74060408|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	451.6663818359375	2	451.266345	900.518136	-0.38186	-0.00017232	0.19966	9.0099E-05	-0.1822	-8.222E-05	451.2662771219061	55.229	0.40764	55.979	55.779	56.187	0.75075					16	7	3	0	0	0	0.1978	1	20882	20882		38.151	3.9638	1	2531800	+		2449	16075	1598	1615	2400	2400					0.06389812342558798
ALAGPVARF	9	Unmodified	_ALAGPVARF_					0	0	0			REV__ELN|p.G581R|1|0.29|ENSG00000049540|chr7:74060408-74060408|G/A|missense_variant	REV__ELN|p.G581R|1|0.29|ENSG00000049540|chr7:74060408-74060408|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	451.266345	900.518136	-0.063783	-2.8783E-05	-0.08797	-3.9698E-05	-0.15175	-6.8481E-05	451.26626852532115	56.117	0.40382	56.117	55.891	56.295	0	0.068904	-0.00011278	NaN	38.151	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3791600	+		2450	16075	1598	1615							0.06389812342558798
ALAGPVARF	9	Unmodified	_ALAGPVARF_					0	0	0			REV__ELN|p.G581R|1|0.29|ENSG00000049540|chr7:74060408-74060408|G/A|missense_variant	REV__ELN|p.G581R|1|0.29|ENSG00000049540|chr7:74060408-74060408|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	451.266345	900.518136	-0.38186	-0.00017232	0.19966	9.0099E-05	-0.1822	-8.222E-05	451.2662771219061	55.229	0.40764	55.979	55.779	56.187	0.75075	-0.068904	0.00014681	NaN	38.151	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2531800	+		2451	16075	1598	1615							0.06389812342558798
ALAGVSFEI	9	Unmodified	_ALAGVSFEI_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENST00000574894.1_1_16:16367711-16371421:+|nuORF	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-SECPEP	A375_MHC_IP_R2	2	906.8948974609375	1	906.49311	905.485833	-0.25387	-0.00023013	1.2387	0.0011229	0.98481	0.00089272	906.4939252060944	116.93	0.50896	117.59	117.38	117.89	0.65961					16	9	2	0	0	0	0.047455	1	44277	44277		78.149	38.192	1	6356300			2452	2432	1599	1616	2401	2401					0.029309801489034726
ALAGVVGV	8	Unmodified	_ALAGVVGV_					0	0	0		nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MULTI-SECPEP	A375_MHC_IP_R2	2	684.77783203125	1	685.424302	684.417025	-0.68171	-0.00046726	0.14558	9.9787E-05	-0.53612	-0.00036747	685.4242728720869	75.4	0.51103	76.14	75.925	76.436	0.74052					14	9	2	0	0	0	0.37475	1	28606	28606		32.454	8.2437	1	3885700			2453	2270	1600	1617	2402	2402					0.062193606398523116
ALAGVVGV	8	Unmodified	_ALAGVVGV_					0	0	0		nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MULTI-MATCH	A375_MHC_IP_R1	1		1	685.424302	684.417025	-0.6824	-0.00046774	0.26464	0.00018139	-0.41776	-0.00028634	685.4243902653582	76.308	0.55558	76.308	75.966	76.522	0	0.08393	5.6602E-05	NaN	32.454	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3232800			2454	2270	1600	1617							0.062193606398523116
ALAKAPGK	8	Unmodified	_ALAKAPGK_					0	0	0		ENST00000293261.7_1_19:48848603-48867193:-|nuORF	ENST00000293261.7_1_19:48848603-48867193:-|nuORF	ENST00000293261.7_1_19:48848603-48867193:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	378.6488037109375	2	378.242338	754.470124	0.35659	0.00013488	1.8107	0.00068489	2.1673	0.00081977	378.24246711173856	60.003	0.76317	60.003	59.651	60.414	0					30	14	3	0	0	0	0.77702	1	21696	21696		5.7604	0	1	2447000			2455	10481	1601	1618	2403	2403					0.08306738422515991
ALAKATIN	8	Unmodified	_ALAKATIN_					0	0	0			REV__ENSG00000160111|ENST00000443236|CPAMD8	REV__ENSG00000160111|ENST00000443236|CPAMD8	MULTI-SECPEP	A375_MHC_IP_R2	2	401.1656494140625	2	401.245078	800.475603	-0.32416	-0.00013007	0.20173	8.0944E-05	-0.12243	-4.9123E-05	401.2450586602261	60.427	1.0161	61.172	60.499	61.515	0.74503					35	19	3	0	0	0	0.8957	1	22714	22714		28.487	13.905	1	4324700	+		2456	20146	1602	1619	2404	2404					0.06738417214330639
ALAKPPVVSV	10	Unmodified	_ALAKPPVVSV_					0	0	0		nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400	nc|ENSG00000183495|Q96L91-4|EP400	nc|ENSG00000183495|Q96L91-4|EP400	MULTI-SECPEP	A375_MHC_IP_R2	2	490.6817321777344	2	490.810585	979.606617	-0.87528	-0.0004296	0.47461	0.00023294	-0.40067	-0.00019665	490.8105715019894	56.394	0.45949	57.144	56.948	57.408	0.75015					10	8	2	0	0	0	0.70528	1	21323	21323		26.268	13.737	1	971450			2457	8499	1603	1620	2405	2405					0.1159980786237611
ALAKQNLTL	9	Unmodified	_ALAKQNLTL_					0	0	0			REV__nc|ENSG00000135773|O14815-2|CAPN9	REV__nc|ENSG00000135773|O14815-2|CAPN9	MULTI-MSMS	A375_MHC_IP_R1	1	486.3326721191406	2	486.297842	970.581131	-0.65269	-0.0003174	0.36423	0.00017713	-0.28845	-0.00014027	486.297989745589	68.155	0.50838	68.155	67.904	68.412	0					22	9	3	0	0	0	0.11296	1	24732	24732		48.346	2.3249	1	3466700	+		2458	18883	1604	1621	2406	2406					0.09466333339935318
ALAKQNLTL	9	Unmodified	_ALAKQNLTL_					0	0	0			REV__nc|ENSG00000135773|O14815-2|CAPN9	REV__nc|ENSG00000135773|O14815-2|CAPN9	MULTI-SECPEP	A375_MHC_IP_R1	1	486.697509765625	2	486.297842	970.581131	-0.65269	-0.0003174	0.36423	0.00017713	-0.28845	-0.00014027	486.297989745589	68.155	0.50838	68.155	67.904	68.412	0					22	9	3	0	0	0	0.28475	1	24694	24694		48.346	8.3961	1	3466700	+		2459	18883	1604	1621	2407	2407					0.09466333339935318
ALALIYNEA	9	Unmodified	_ALALIYNEA_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-MSMS	A375_MHC_IP_R1	1	977.9283447265625	1	977.530224	976.522947	0.31263	0.00030561	0.19926	0.00019479	0.5119	0.0005004	977.5302543083047	92.287	0.71162	92.287	91.956	92.668	0					30	13	3	0	0	0	0.0007967	1	33863	33863		197.17	100.88	1	13186000			2460	9212	1605	1622	2408	2408					0.033746516946507654
ALALIYNEA	9	Unmodified	_ALALIYNEA_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-SECPEP	A375_MHC_IP_R1	1	489.66851806640625	2	489.26875	976.522947	-0.12231	-5.9843E-05	0.28083	0.0001374	0.15852	7.756E-05	489.2686870236144	92.236	0.81181	92.236	91.906	92.718	0					33	15	3	0	0	0	0.011358	1	33879	33879		108	68.04	1	4640300			2461	9212	1605	1622	2409	2409					0.033746516946507654
ALALIYNEA	9	Unmodified	_ALALIYNEA_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-MSMS	A375_MHC_IP_R2	2	489.6690673828125	2	489.26875	976.522947	-0.46728	-0.00022863	0.21	0.00010275	-0.25728	-0.00012588	489.2686988232874	91.442	0.81247	92.177	91.818	92.63	0.7345					32	15	3	0	0	0	0.034481	1	34761	34761		71.134	39.865	1	4733300			2462	9212	1605	1622	2410	2410					0.033746516946507654
ALALIYNEA	9	Unmodified	_ALALIYNEA_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-MATCH	A375_MHC_IP_R2	2		1	977.530224	976.522947	0.073036	7.1395E-05	-0.096796	-9.4621E-05	-0.02376	-2.3226E-05	977.5300614438638	91.479	0.66168	92.214	91.919	92.581	0.73451	-0.036454	-0.00020233	NaN	197.17	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9748400			2463	9212	1605	1622							0.033746516946507654
ALANHLIKV	9	Unmodified	_ALANHLIKV_					0	0	0		ENSG00000013016|ENST00000322054|EHD3;ENSG00000110047|ENST00000320631|EHD1;ENST00000484846.1_1_11:64621807-64623066:-|nuORF	ENSG00000013016|ENST00000322054|EHD3;ENSG00000110047|ENST00000320631|EHD1	ENSG00000110047|ENST00000320631|EHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	490.20819091796875	2	489.808377	977.6022	0.11734	5.7473E-05	-0.14543	-7.1231E-05	-0.028088	-1.3758E-05	489.8080715638083	45.209	0.55538	45.209	44.928	45.484	0					20	10	3	0	0	0	0.011178	1	15816	15816		128.37	32.081	1	6755400			2464	1015;2911	1606	1623	2411	2411					0.11250343439473909
ALANHLIKV	9	Unmodified	_ALANHLIKV_					0	0	0		ENSG00000013016|ENST00000322054|EHD3;ENSG00000110047|ENST00000320631|EHD1;ENST00000484846.1_1_11:64621807-64623066:-|nuORF	ENSG00000013016|ENST00000322054|EHD3;ENSG00000110047|ENST00000320631|EHD1	ENSG00000110047|ENST00000320631|EHD1	MULTI-SECPEP	A375_MHC_IP_R2	2	490.2079772949219	2	489.808377	977.6022	-0.44669	-0.00021879	-0.30298	-0.0001484	-0.74967	-0.0003672	489.8080293436856	44.14	0.40593	44.909	44.782	45.188	0.7691					13	7	2	0	0	0	0.012104	1	16481	16481		103.75	28.819	1	5189200			2465	1015;2911	1606	1623	2412	2412					0.11250343439473909
ALANLTGTVV	10	Unmodified	_ALANLTGTVV_					0	0	0		nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN;ENST00000491390.1_1_1:160325502-160326610:+|nuORF	nc|ENSG00000162736|Q92542-2|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	MULTI-MSMS	A375_MHC_IP_R2	2	480.1815490722656	2	479.782025	957.549496	-0.47883	-0.00022973	0.5084	0.00024392	0.029572	1.4188E-05	479.78209495013766	89.113	0.3	89.844	89.685	89.985	0.7318					9	5	2	0	0	0	0.45919	1	33931	33931		30.637	4.2953	1	1104900			2466	6585	1607	1624	2413	2413					0.06902340586009359
ALANLTGTVV	10	Unmodified	_ALANLTGTVV_					0	0	0		nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN;ENST00000491390.1_1_1:160325502-160326610:+|nuORF	nc|ENSG00000162736|Q92542-2|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	MULTI-MATCH	A375_MHC_IP_R1	1		2	479.782025	957.549496	-0.51299	-0.00024612	0.96099	0.00046106	0.448	0.00021494	479.7822151579477	89.901	0.40318	89.901	89.73	90.133	0	0.028413	0.00016661	NaN	30.637	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	780030			2467	6585	1607	1624							0.06902340586009359
ALANQIPTV	9	Unmodified	_ALANQIPTV_					0	0	0		ENSG00000095002|ENST00000233146|MSH2;nc|ENSG00000095002|P43246-2|MSH2	ENSG00000095002|ENST00000233146|MSH2	ENSG00000095002|ENST00000233146|MSH2	MULTI-SECPEP	A375_MHC_IP_R1	1	464.1686096191406	2	463.768917	925.523281	-0.26001	-0.00012058	-0.042821	-1.9859E-05	-0.30283	-0.00014044	463.7688344098529	77.264	0.65833	77.264	76.981	77.639	0					30	12	3	0	0	0	0.040439	1	28161	28161		92.822	21.689	1	3758600			2468	2032	1608	1625	2414	2414					0.05754071414514783
ALANQIPTV	9	Unmodified	_ALANQIPTV_					0	0	0		ENSG00000095002|ENST00000233146|MSH2;nc|ENSG00000095002|P43246-2|MSH2	ENSG00000095002|ENST00000233146|MSH2	ENSG00000095002|ENST00000233146|MSH2	MULTI-SECPEP	A375_MHC_IP_R2	2	464.16827392578125	2	463.768917	925.523281	-0.57111	-0.00026486	0.12451	5.7742E-05	-0.44661	-0.00020712	463.76894886106635	76.48	0.71118	77.22	76.893	77.604	0.74052					29	13	3	0	0	0	0.011207	1	29024	29024		125.62	44.012	1	4663300			2469	2032	1608	1625	2415	2415					0.05754071414514783
ALAPAPPQV	9	Unmodified	_ALAPAPPQV_					0	0	0		ENST00000525693.5_1_11:65421851-65422496:-|nuORF;nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA;ENST00000531484.5_1_11:65421851-65429483:-|nuORF;ENSG00000173039|ENST00000406246|RELA	ENST00000525693.5_1_11:65421851-65422496:-|nuORF	ENST00000525693.5_1_11:65421851-65422496:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	432.65277099609375	2	432.252903	862.491253	-0.19482	-8.421E-05	0.2055	8.883E-05	0.010688	4.6198E-06	432.2529098495074	64.419	0.76234	64.419	64.141	64.903	0					28	14	3	0	0	0	0.0094266	1	23275	23275		97.075	52.668	1	6536300			2470	7760	1609	1626	2416	2416					0.05450703731366957
ALAPAPPQV	9	Unmodified	_ALAPAPPQV_					0	0	0		ENST00000525693.5_1_11:65421851-65422496:-|nuORF;nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA;ENST00000531484.5_1_11:65421851-65429483:-|nuORF;ENSG00000173039|ENST00000406246|RELA	ENST00000525693.5_1_11:65421851-65422496:-|nuORF	ENST00000525693.5_1_11:65421851-65422496:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	432.6525573730469	2	432.252903	862.491253	-0.17615	-7.6142E-05	0.050383	2.1778E-05	-0.12577	-5.4364E-05	432.2528616230547	63.68	0.65988	64.42	64.191	64.85	0.74022					28	12	3	0	0	0	0.0098247	1	24129	24129		114.94	51.381	1	10423000			2471	7760	1609	1626	2417	2417					0.05450703731366957
ALAPGLPTA	9	Unmodified	_ALAPGLPTA_					0	0	0		ENSG00000117691|ENST00000366988|NENF;ENST00000472389.1_1_1:212606336-212608058:+|nuORF;ENST00000479589.5_1_1:212606267-212617713:+|nuORF	ENSG00000117691|ENST00000366988|NENF	ENSG00000117691|ENST00000366988|NENF	MULTI-MSMS	A375_MHC_IP_R2	2	810.77783203125	1	810.47198	809.464704	-0.93052	-0.00075416	0.51991	0.00042137	-0.41061	-0.00033278	810.4723294203213	74.751	1.2704	75.489	75.009	76.279	0.73752					60	24	4	0	0	0	0.018481	1	28463	28463		85.357	24.967	1	83655000			2472	3507	1610	1627	2418	2418					0.05235014840036456
ALAPGLPTA	9	Unmodified	_ALAPGLPTA_					0	0	0		ENSG00000117691|ENST00000366988|NENF;ENST00000472389.1_1_1:212606336-212608058:+|nuORF;ENST00000479589.5_1_1:212606267-212617713:+|nuORF	ENSG00000117691|ENST00000366988|NENF	ENSG00000117691|ENST00000366988|NENF	MULTI-SECPEP	A375_MHC_IP_R2	2	406.1395568847656	2	405.739628	809.464704	-0.046497	-1.8866E-05	0.16923	6.8664E-05	0.12273	4.9798E-05	405.739547948614	74.703	0.96471	75.441	74.907	75.872	0.73752					31	18	2	0	0	0	0.043556	1	28324	28324		89.427	35.851	1	12233000			2473	3507	1610	1627	2419	2419					0.05235014840036456
ALAPGLPTA	9	Unmodified	_ALAPGLPTA_					0	0	0		ENSG00000117691|ENST00000366988|NENF;ENST00000472389.1_1_1:212606336-212608058:+|nuORF;ENST00000479589.5_1_1:212606267-212617713:+|nuORF	ENSG00000117691|ENST00000366988|NENF	ENSG00000117691|ENST00000366988|NENF	MULTI-MATCH	A375_MHC_IP_R1	1		1	810.47198	809.464704	-0.40062	-0.00032469	0.17542	0.00014217	-0.22519	-0.00018251	810.4720431333458	75.49	1.3605	75.49	75.06	76.421	0	0.00028858	-0.00016062	NaN	85.357	59	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84189000			2474	3507	1610	1627							0.05235014840036456
ALAPGVRAV	9	Unmodified	_ALAPGVRAV_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MSMS	A375_MHC_IP_R1	1	427.6662292480469	2	427.266345	852.518136	-0.37291	-0.00015933	0.4727	0.00020197	0.099786	4.2635E-05	427.2665313525135	39.819	1.068	39.819	39.541	40.609	0					50	20	4	0	0	0	0.018481	2	13587	13587;13737		85.357	27.885	1	157100000			2475	3889	1611	1628	2420;2421	2420					0.08597812342554789
ALAPGVRAV	9	Unmodified	_ALAPGVRAV_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MSMS	A375_MHC_IP_R2	2	427.6662292480469	2	427.266345	852.518136	-0.41681	-0.00017809	0.071017	3.0343E-05	-0.3458	-0.00014775	427.2663565200278	38.959	1.2748	39.734	39.401	40.676	0.77451					54	24	4	0	0	0	0.0094266	1	14318	14318		97.075	29.731	1	196260000			2476	3889	1611	1628	2422	2422					0.08597812342554789
ALAPTSFLQ	9	Unmodified	_ALAPTSFLQ_					0	0	0			REV__ENST00000425802.1_1_1:52499214-52509659:+|nuORF	REV__ENST00000425802.1_1_1:52499214-52509659:+|nuORF	MSMS	A375_MHC_IP_R1	1	474.14068603515625	2	474.263468	946.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.21	1	33.21	32.71	33.71	0								0	0	0	0.14851	1	10816	10816		24.021	2.2739	1		+		2477	24639	1612	1629	2423	2423					0.03698669040238656
ALAPVTIEV	9	Unmodified	_ALAPVTIEV_					0	0	0		ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	A375_MHC_IP_R1	1	912.8851318359375	1	912.54006	911.532783	-0.091451	-8.3453E-05	0.43645	0.00039828	0.345	0.00031483	912.5402521445101	104.38	0.50916	104.38	104.08	104.59	0					16	9	2	0	0	0	0.03063	2	38384	38384;38402		74.423	16.951	1	3621100			2478	7061	1613	1630	2424;2425	2424					0.07347839700048553
ALAPVTIEV	9	Unmodified	_ALAPVTIEV_					0	0	0		ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	MULTI-MATCH	A375_MHC_IP_R2	2		1	912.54006	911.532783	-0.3364	-0.00030698	0.35389	0.00032294	0.017494	1.5964E-05	912.5403095515563	103.49	0.50885	104.25	103.99	104.5	0.76428	-0.067376	-3.0553E-05	NaN	74.423	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3534300			2479	7061	1613	1630							0.07347839700048553
ALAQERLVV	9	Unmodified	_ALAQERLVV_					0	0	0			REV__ENSG00000170178|ENST00000406506|HOXD12	REV__ENSG00000170178|ENST00000406506|HOXD12	MULTI-MSMS	A375_MHC_IP_R1	1	500.20330810546875	2	499.803291	997.59203	-0.64054	-0.00032014	0.047384	2.3683E-05	-0.59316	-0.00029646	499.8033458969271	38.041	0.35648	38.041	37.812	38.168	0					15	6	3	0	0	0	0.05754	1	12877	12877		61.357	6.5839	1	5470300	+		2480	20971	1614	1631	2426	2426					0.09313735714226823
ALAQERLVV	9	Unmodified	_ALAQERLVV_					0	0	0			REV__ENSG00000170178|ENST00000406506|HOXD12	REV__ENSG00000170178|ENST00000406506|HOXD12	MULTI-MSMS	A375_MHC_IP_R2	2	500.2029113769531	2	499.803291	997.59203	-1.1259	-0.00056273	0.29808	0.00014898	-0.82782	-0.00041375	499.80341682465973	37.171	0.40466	37.942	37.767	38.171	0.7709					14	7	2	0	0	0	0.064406	1	13599	13599		58.679	14.821	1	4488000	+		2481	20971	1614	1631	2427	2427					0.09313735714226823
ALAQERLVV	9	Unmodified	_ALAQERLVV_					0	0	0			REV__ENSG00000170178|ENST00000406506|HOXD12	REV__ENSG00000170178|ENST00000406506|HOXD12	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	499.803291	997.59203	-1.1259	-0.00056273	0.29808	0.00014898	-0.82782	-0.00041375	499.80341682465973	37.171	0.40466	37.942	37.767	38.171	0.7709	-0.049571	0.00010601	NaN	61.357	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4488000	+		2482	20971	1614	1631							0.09313735714226823
ALAQYLITA	9	Unmodified	_ALAQYLITA_					0	0	0		nc|ENSG00000090097|P57723-2|PCBP4;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000492809.5_1_3:51992079-51994784:-|nuORF	nc|ENSG00000090097|P57723-2|PCBP4	nc|ENSG00000090097|P57723-2|PCBP4	MULTI-MSMS	A375_MHC_IP_R1	1	482.67889404296875	2	482.279118	962.543683	-0.32573	-0.00015709	0.16529	7.9716E-05	-0.16044	-7.7379E-05	482.27913146703	104.17	0.61079	104.17	103.88	104.49	0					28	11	3	0	0	0	0.034481	1	38221	38221		71.134	3.7897	1	5049100			2483	1945	1615	1632	2428	2428					0.06091242074319325
ALAQYLITA	9	Unmodified	_ALAQYLITA_					0	0	0		nc|ENSG00000090097|P57723-2|PCBP4;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000492809.5_1_3:51992079-51994784:-|nuORF	nc|ENSG00000090097|P57723-2|PCBP4	nc|ENSG00000090097|P57723-2|PCBP4	MULTI-MSMS	A375_MHC_IP_R2	2	482.6784973144531	2	482.279118	962.543683	-0.55621	-0.00026825	-0.079269	-3.823E-05	-0.63548	-0.00030648	482.2790246061673	103.34	0.71264	104.1	103.74	104.45	0.76428					32	13	3	0	0	0	0.026461	1	39080	39080		77.984	14.421	1	6279700			2484	1945	1615	1632	2429	2429					0.06091242074319325
ALARSTGPV	9	Unmodified	_ALARSTGPV_					0	0	0			REV__ENST00000355943.7_1_5:110074761-110074947:+|nuORF	REV__ENST00000355943.7_1_5:110074761-110074947:+|nuORF	MSMS	A375_MHC_IP_R2	2	436.20501708984375	2	436.253434	870.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.03	1	101.8	101.3	102.3	0.76428								0	0	0	0.15486	1	38300	38300		10.824	0.64053	1		+		2485	23826	1616	1633	2430	2430					0.051889181002820806
ALASGVLYGA	10	Unmodified	_ALASGVLYGA_					0	0	0		nc|ENSG00000121753|O60241-4|ADGRB2;nc|ENSG00000121753|O60241-3|ADGRB2;nc|ENSG00000121753|O60241-2|ADGRB2;ENSG00000121753|ENST00000373658|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	MULTI-MSMS	A375_MHC_IP_R2	2	461.65447998046875	2	461.255643	920.496732	-0.67095	-0.00030948	-1.4955	-0.0006898	-2.1664	-0.00099928	461.25468203138286	72.067	1.1138	72.801	72.264	73.377	0.7342					33	21	3	0	0	0	0.33603	1	27491	27491		37.974	7.3375	1	3802600			2486	3735	1617	1634	2431	2431					0.03330382523188291
ALASHDQNTL	10	Unmodified	_ALASHDQNTL_					0	0	0		EFS|p.D278N|1|0.12|ENSG00000100842|chr14:23359646-23359646|C/T|missense_variant	EFS|p.D278N|1|0.12|ENSG00000100842|chr14:23359646-23359646|C/T|missense_variant	EFS|p.D278N|1|0.12|ENSG00000100842|chr14:23359646-23359646|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	535.669677734375	2	535.26727	1068.51999	-1.1313	-0.00060554	0.13496	7.224E-05	-0.99632	-0.0005333	535.7679672256197	58.238	0.9128	58.987	58.629	59.542	0.74894					40	17	4	0	0	0	0.83355	1	22232	22232		4.897	0	1	4740300			2487	828	1618	1635	2432	2432					-0.01153223430151229
ALASHILTA	9	Unmodified	_ALASHILTA_					0	0	0		nc|ENSG00000160049|O00273-2|DFFA;ENSG00000160049|ENST00000377038|DFFA	nc|ENSG00000160049|O00273-2|DFFA	nc|ENSG00000160049|O00273-2|DFFA	MULTI-SECPEP	A375_MHC_IP_R1	1	449.16351318359375	2	448.763635	895.512717	-0.048047	-2.1562E-05	0.40273	0.00018073	0.35469	0.00015917	448.7636880106954	52.111	0.60945	52.111	51.829	52.438	0					24	11	3	0	0	0	0.0065996	1	18501	18501		133.7	48.345	1	10161000			2488	6392	1619	1636	2433	2433					0.06078088760079936
ALASHILTA	9	Unmodified	_ALASHILTA_					0	0	0		nc|ENSG00000160049|O00273-2|DFFA;ENSG00000160049|ENST00000377038|DFFA	nc|ENSG00000160049|O00273-2|DFFA	nc|ENSG00000160049|O00273-2|DFFA	MULTI-SECPEP	A375_MHC_IP_R2	2	449.1632995605469	2	448.763635	895.512717	-0.45476	-0.00020408	-0.11759	-5.2772E-05	-0.57236	-0.00025685	448.76354362407403	51.188	0.60713	51.94	51.663	52.27	0.75225					24	11	3	0	0	0	0.011207	1	19224	19224		125.62	36.198	1	10062000			2489	6392	1619	1636	2434	2434					0.06078088760079936
ALASHLIEA	9	Unmodified	_ALASHLIEA_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	A375_MHC_IP_R1	1	462.7112121582031	2	462.761092	923.507631	-0.25071	-0.00011602	0.0090724	4.1983E-06	-0.24164	-0.00011182	462.7610689907923	52.361	1.2161	52.361	52.034	53.25	0					57	23	4	0	0	0	0.047602	1	18742	18742		65.235	20.828	1	106110000			2490	1083	1620	1637	2435	2435					0.04281784897466423
ALASHLIEA	9	Unmodified	_ALASHLIEA_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	A375_MHC_IP_R2	2	462.7108154296875	2	462.761092	923.507631	-0.73652	-0.00034083	0.18017	8.3375E-05	-0.55635	-0.00025746	462.7611355792374	51.393	1.2196	52.145	51.813	53.032	0.75225					61	23	5	0	0	0	0.0097736	1	19436	19436		112.59	55.122	1	85806000			2491	1083	1620	1637	2436	2436					0.04281784897466423
ALASLENHV	9	Unmodified	_ALASLENHV_					0	0	0		nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33;ENST00000476908.1_1_1:114948024-114949565:-|nuORF	nc|ENSG00000197323|Q9UPN9-2|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	MULTI-MSMS	A375_MHC_IP_R1	1	477.6560363769531	2	477.256174	952.497795	-0.31825	-0.00015189	0.56815	0.00027115	0.2499	0.00011927	477.2564283512195	43.227	0.76402	43.227	42.942	43.706	0					25	14	3	0	0	0	0.004328	1	15001	15001		136.33	71.098	1	6084600			2492	9144	1621	1638	2437	2437					0.019645968920940504
ALASLENHV	9	Unmodified	_ALASLENHV_					0	0	0		nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33;ENST00000476908.1_1_1:114948024-114949565:-|nuORF	nc|ENSG00000197323|Q9UPN9-2|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	MULTI-MSMS	A375_MHC_IP_R2	2	477.65582275390625	2	477.256174	952.497795	-0.47714	-0.00022772	0.74254	0.00035438	0.2654	0.00012666	477.25668031559445	42.369	0.76543	43.141	42.757	43.523	0.7724					24	14	3	0	0	0	0.2487	1	15830	15830		34.402	34.402	1	5370200			2493	9144	1621	1638	2438	2438					0.019645968920940504
ALASLENHV	9	Unmodified	_ALASLENHV_					0	0	0		nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33;ENST00000476908.1_1_1:114948024-114949565:-|nuORF	nc|ENSG00000197323|Q9UPN9-2|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	477.256174	952.497795	-0.47714	-0.00022772	0.74254	0.00035438	0.2654	0.00012666	477.25668031559445	42.369	0.76543	43.141	42.757	43.523	0.7724	-0.042991	0.00011637	NaN	136.33	24	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5370200			2494	9144	1621	1638							0.019645968920940504
ALASLIRSV	9	Unmodified	_ALASLIRSV_					0	0	0		ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	MULTI-SECPEP	A375_MHC_IP_R1	1	465.6922912597656	2	465.292559	928.570566	-0.27232	-0.00012671	-0.088825	-4.133E-05	-0.36115	-0.00016804	465.29247851631976	77.193	0.55685	77.193	76.93	77.486	0					17	10	2	0	0	0	0.20059	1	28147	28147		59.368	15.51	1	4024600			2495	2498	1622	1639	2439	2439					0.10342350685516521
ALASLIRSV	9	Unmodified	_ALASLIRSV_					0	0	0		ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	MULTI-SECPEP	A375_MHC_IP_R2	2	465.6924743652344	2	465.292559	928.570566	-0.62934	-0.00029282	-0.090974	-4.2329E-05	-0.72031	-0.00033515	465.2924376206377	76.177	0.50624	76.918	76.64	77.146	0.74052					21	9	3	0	0	0	0.26374	1	28912	28912		47.732	15.694	1	4532500			2496	2498	1622	1639	2440	2440					0.10342350685516521
ALASLLQEL	9	Unmodified	_ALASLLQEL_					0	0	0		ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	MULTI-MSMS	A375_MHC_IP_R1	1	479.6846008300781	2	479.2844	956.554247	-0.57804	-0.00027705	1.175	0.00056316	0.59695	0.00028611	479.28504048006084	129.32	0.55945	129.32	129.09	129.65	0					13	10	2	0	0	0	0.054426	1	49766	49766		62.573	10.304	1	8576200			2497	4145	1623	1640	2441	2441					0.0742322472875685
ALASRFLKKA	10	Unmodified	_ALASRFLKKA_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	A375_MHC_IP_R1	1	369.30096435546875	3	368.901114	1103.68151	-0.04289	-1.5822E-05	0.39591	0.00014605	0.35302	0.00013023	368.9011673813322	29.102	0.35717	29.102	28.895	29.252	0					16	6	4	0	0	0	0.57453	1	9053	9053		22.775	11.876	1	4452700			2498	8551	1624	1641	2442	2442					0.13381990393600063
ALASRFLKKA	10	Unmodified	_ALASRFLKKA_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	A375_MHC_IP_R2	2	369.3009033203125	3	368.901114	1103.68151	0.043182	1.593E-05	-0.16425	-6.0592E-05	-0.12107	-4.4662E-05	368.900987312853	28.154	0.40649	28.833	28.553	28.96	0.67857					11	7	2	0	0	0	0.68889	1	9704	9704		14.218	6.6092	1	6477800			2499	8551	1624	1641	2443	2443					0.13381990393600063
ALASVHHPP	9	Unmodified	_ALASVHHPP_					0	0	0			REV__ENST00000332047.9_1_3:134204707-134214160:+|nuORF	REV__ENST00000332047.9_1_3:134204707-134214160:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	464.7084045410156	2	464.753601	927.49265	-0.20833	-9.6821E-05	0.12358	5.7434E-05	-0.084749	-3.9388E-05	464.75363935796025	54.792	0.81256	54.792	54.415	55.228	0					41	15	4	0	0	0	0.5339	1	19448	19448		18.135	3.2967	1	34063000	+		2500	23634	1625	1642	2444	2444					0.026003378201380656
ALATDEKW	8	Unmodified	_ALATDEKW_					0	0	0			REV__nc|ENSG00000143498|Q15573-2|TAF1A	REV__nc|ENSG00000143498|Q15573-2|TAF1A	MULTI-MSMS	A375_MHC_IP_R2	2	467.18182373046875	2	467.23745	932.460347	-0.77756	-0.0003633	0.50134	0.00023425	-0.27621	-0.00012906	467.2376573502396	66.325	0.91827	67.061	66.78	67.698	0.73631					22	17	2	0	0	0	0.7758	1	25325	25325		10.183	0.83596	1	1738400	+		2501	19363	1626	1643	2445	2445					-0.008584943735286288
ALATLFKST	9	Unmodified	_ALATLFKST_					0	0	0			REV__ENSG00000170248|ENST00000307296|PDCD6IP	REV__ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-SECPEP	A375_MHC_IP_R1	1	475.6950378417969	2	476.279118	950.543683	-0.55802	-0.00026577	0.47708	0.00022722	-0.080943	-3.8551E-05	476.27937656210764	43.884	0.25272	43.884	43.706	43.959	0					8	4	2	0	0	0	0.65246	1	15278	15278		3.5965	0	1	1393200	+		2502	20977	1627	1644	2446	2446					0.06643242074335376
ALATLIHQV	9	Unmodified	_ALATLIHQV_					0	0	0		ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	MULTI-SECPEP	A375_MHC_IP_R1	1	482.6241760253906	2	483.292559	964.570566	0.19866	9.6012E-05	-0.35295	-0.00017058	-0.15429	-7.4567E-05	483.292367662155	69.453	2.0375	69.453	69.121	71.159	0					104	39	5	0	0	0	0.01091	1	25295	25295		144.35	89.577	1	155780000			2503	3007	1628	1645	2447	2447					0.08686350685502475
ALATLIHQV	9	Unmodified	_ALATLIHQV_					0	0	0		ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6924133300781	2	483.292559	964.570566	-0.47512	-0.00022962	0.13782	6.6608E-05	-0.3373	-0.00016301	483.29263257179036	68.511	2.1309	69.247	68.867	70.998	0.73512					111	41	6	0	0	0	0.0020441	1	25889	25889		181.33	76.528	1	230250000			2504	3007	1628	1645	2448	2448					0.08686350685502475
ALATRVQV	8	Unmodified	_ALATRVQV_					0	0	0			REV__nc|ENSG00000204314|Q99946-2|PRRT1	REV__nc|ENSG00000204314|Q99946-2|PRRT1	MULTI-SECPEP	A375_MHC_IP_R1	1	429.6216125488281	2	429.263802	856.513051	-0.14371	-6.1691E-05	-0.34718	-0.00014903	-0.49089	-0.00021072	429.26366741746665	40.825	0.30282	40.825	40.66	40.963	0					10	5	2	0	0	0	0.8824	1	14093	14093		23.148	3.7094	1	1220600	+		2505	22505	1629	1646	2449	2449					0.07905508479939272
ALATSISLPSF	11	Unmodified	_ALATSISLPSF_					0	0	0			REV__SERPINA3|p.A91Pfs*6|1|0.27|ENSG00000196136|chr14:94614708-94614708|G/-|frameshift_variant	REV__SERPINA3|p.A91Pfs*6|1|0.27|ENSG00000196136|chr14:94614708-94614708|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	554.2084350585938	2	553.808239	1105.60193	-0.38885	-0.00021535	0.0089542	4.9589E-06	-0.37989	-0.00021039	553.8082250918591	72.296	0.40548	72.296	72.169	72.575	0					10	7	2	0	0	0	0.95991	1	26375	26375		18.146	8.0724	1	1710900	+		2506	22162	1630	1647	2450	2450					0.05334878928942999
ALCFLVCLTL	10	Unmodified	_ALCFLVCLTL_					0	0	0			REV__BMP10|p.A10V|1|0.13|ENSG00000163217|chr2:68871330-68871330|G/A|missense_variant	REV__BMP10|p.A10V|1|0.13|ENSG00000163217|chr2:68871330-68871330|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6450805664062	2	548.300681	1094.58681	-0.38634	-0.00021183	-1.2328	-0.00067596	-1.6192	-0.00088779	548.3000733554553	71.322	0.256	71.322	71.159	71.415	0					6	4	2	0	0	0	0.68963	1	25897	25897		26.884	0	1	2142000	+		2507	15513	1631	1648	2451	2451					0.043299725357655916
ALCHLPSL	8	Unmodified	_ALCHLPSL_					0	0	0			REV__ARHGAP4|p.W103L|1|0.89|ENSG00000089820|chrX:153921492-153921492|C/A|missense_variant	REV__ARHGAP4|p.W103L|1|0.89|ENSG00000089820|chrX:153921492-153921492|C/A|missense_variant	MSMS	A375_MHC_IP_R1	1	427.1505126953125	2	427.233656	852.452759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.976	1	56.976	56.476	57.476	0								0	0	0	0.16876	1	20424	20424		10.183	0	1		+		2508	15438	1632	1649	2452	2452					0.020630748252074227
ALCLQHCHL	9	Unmodified	_ALCLQHCHL_					0	0	0		ENST00000603037.2_2_X:73422686-73423058:-|nuORF	ENST00000603037.2_2_X:73422686-73423058:-|nuORF	ENST00000603037.2_2_X:73422686-73423058:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	518.6917114257812	2	519.254597	1036.49464	-0.3426	-0.0001779	-2.1179	-0.0010998	-2.4605	-0.0012777	519.7549998276318	82.239	0.30563	82.239	82.163	82.469	0					7	5	2	0	0	0	0.74651	1	30055	30055		8.5933	1.304	1	981180			2509	13892	1633	1650	2453	2453					-0.022146927579342446
ALCPQVINA	9	Unmodified	_ALCPQVINA_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	A375_MHC_IP_R1	1	464.6741027832031	2	464.74967	927.484787	-0.12144	-5.644E-05	0.0045654	2.1218E-06	-0.11688	-5.4318E-05	464.7495905827289	79.089	2.0377	79.089	78.707	80.744	0					73	39	3	0	0	0	0.0093345	2	28861	28861;29219		104.8	58.778	1	15748000			2510	1184	1634	1651	2454;2455	2454					0.018144425083505666
ALCPQVINA	9	Unmodified	_ALCPQVINA_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	A375_MHC_IP_R2	2	465.1494445800781	2	464.74967	927.484787	-0.57564	-0.00026753	-0.16986	-7.8943E-05	-0.7455	-0.00034647	464.74955004244896	78.312	1.523	79.055	78.624	80.147	0.74293					60	29	3	0	0	0	0.0093345	2	29669	29669;30035		104.8	57.878	1	14393000			2511	1184	1634	1651	2456;2457	2456					0.018144425083505666
ALCPQVINA	9	Carbamidomethyl (C)	_ALC(Carbamidomethyl (C))PQVINA_	ALC(1)PQVINA		ALC(52)PQVINA		0	1	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-SECPEP	A375_MHC_IP_R2	2	492.71673583984375	2	493.260402	984.506251	-0.43244	-0.00021331	-0.77314	-0.00038136	-1.2056	-0.00059467	493.2603014473768	64.475	0.45889	65.215	64.902	65.361	0.74022					18	8	3	0	0	0	0.05755	1	24463	24463		52.268	17.867	1	2495400			2512	1184	1634	1652	2458	2458	3				0.013378275370655501
ALCPQYPAW	9	Unmodified	_ALCPQYPAW_					0	0	0		ENSG00000166704|ENST00000551380|ZNF606	ENSG00000166704|ENST00000551380|ZNF606	ENSG00000166704|ENST00000551380|ZNF606	MSMS	A375_MHC_IP_R2	2	524.713134765625	2	524.74967	1047.48479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.07	1	73.805	73.305	74.305	0.73541								0	0	0	0.15486	1	27736	27736		9.3474	0.75416	1				2513	7103	1635	1653	2459	2459					-0.03705557491639411
ALCVLWCSV	9	Unmodified	_ALCVLWCSV_					0	0	0		ENSG00000158292|ENST00000377893|GPR153	ENSG00000158292|ENST00000377893|GPR153	ENSG00000158292|ENST00000377893|GPR153	MULTI-SECPEP	A375_MHC_IP_R2	2	497.6476745605469	2	497.248449	992.482345	-0.48814	-0.00024273	-0.55415	-0.00027555	-1.0423	-0.00051828	497.2481946715993	76.769	0.65957	77.509	77.095	77.755	0.74052					19	12	2	0	0	0	0.69504	1	29226	29226		4.3292	0	1	2093300			2514	6299	1636	1654	2460	2460					-0.014197292209587431
ALDAGNIKL	9	Unmodified	_ALDAGNIKL_					0	0	0		nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B	nc|ENSG00000110844|Q6NWY9-2|PRPF40B	nc|ENSG00000110844|Q6NWY9-2|PRPF40B	MULTI-MSMS	A375_MHC_IP_R1	1	458.16851806640625	2	457.768917	913.523281	-0.20309	-9.2968E-05	-0.17796	-8.1463E-05	-0.38105	-0.00017443	457.76880829965734	61.903	0.6128	61.903	61.636	62.249	0					17	11	2	0	0	0	0.066859	1	22338	22338		57.722	5.4536	1	4141100			2515	2951	1637	1655	2461	2461					0.06306071414508096
ALDAGNIKL	9	Unmodified	_ALDAGNIKL_					0	0	0		nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B	nc|ENSG00000110844|Q6NWY9-2|PRPF40B	nc|ENSG00000110844|Q6NWY9-2|PRPF40B	MULTI-MSMS	A375_MHC_IP_R2	2	458.1685485839844	2	457.768917	913.523281	-0.61633	-0.00028214	-0.19796	-9.0621E-05	-0.81429	-0.00037276	457.7688123608955	61.017	0.60572	61.762	61.566	62.172	0.74503					17	11	2	0	0	0	0.035419	1	23154	23154		70.332	20.399	1	3806100			2516	2951	1637	1655	2462	2462					0.06306071414508096
ALDANIARL	9	Unmodified	_ALDANIARL_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14;nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14;ENSG00000175455|ENST00000409697|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MULTI-SECPEP	A375_MHC_IP_R1	1	479.1797790527344	2	478.779816	955.545079	-0.48779	-0.00023354	-0.013971	-6.6891E-06	-0.50176	-0.00024023	478.7797818148827	64.356	0.35472	64.356	64.191	64.546	0					10	6	2	0	0	0	0.4465	1	23319	23319		38.176	11.907	1	1101600			2517	14778	1638	1656	2463	2463					0.0655287616308442
ALDANIARL	9	Unmodified	_ALDANIARL_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14;nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14;ENSG00000175455|ENST00000409697|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MULTI-MATCH	A375_MHC_IP_R2	2		2	478.779816	955.545079	-0.49172	-0.00023543	4.2361	0.0020282	3.7444	0.0017927	478.77953114656015	63.572	0.55956	64.312	63.987	64.547	0.74022	-0.021776	0.0039968	NaN	38.176	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1184000			2518	14778	1638	1656							0.0655287616308442
ALDDFSISV	9	Unmodified	_ALDDFSISV_					0	0	0		ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENSG00000134987|ENST00000513710|WDR36	ENSG00000134987|ENST00000513710|WDR36	MULTI-MSMS	A375_MHC_IP_R2	2	967.4873657226562	1	966.477854	965.470577	0.10539	0.00010186	1.0344	0.00099977	1.1398	0.0011016	966.4787034033037	115.36	0.81336	116.05	115.63	116.44	0.68999					23	15	2	0	0	0	0.27715	1	43460	43460		32.305	5.4218	1	11800000			2519	4633	1639	1657	2464	2464					-0.013539314389504398
ALDDFSISV	9	Unmodified	_ALDDFSISV_					0	0	0		ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENSG00000134987|ENST00000513710|WDR36	ENSG00000134987|ENST00000513710|WDR36	MULTI-MATCH	A375_MHC_IP_R1	1		1	966.477854	965.470577	0.44571	0.00043077	1.5491	0.0014971	1.9948	0.0019279	966.4791114688825	116.01	0.71292	116.01	115.68	116.4	0	-0.016558	0.00012501	NaN	32.305	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21606000			2520	4633	1639	1657							-0.013539314389504398
ALDDPYENY	9	Unmodified	_ALDDPYENY_					0	0	0		ENSG00000085872|ENST00000546361|CHERP;ENST00000409035.1_1_19:16629978-16630065:-|nuORF	ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	MULTI-MSMS	A375_MHC_IP_R1	1	550.7206420898438	2	550.232561	1098.45057	-0.7064	-0.00038869	0.95699	0.00052656	0.25058	0.00013788	550.2328038884473	66.079	0.6093	66.079	65.768	66.377	0					23	11	4	0	0	0	0.64808	1	23966	23966		11.64	4.3511	1	1814000			2521	1821	1640	1658	2465	2465					-0.09471727169579935
ALDDPYENY	9	Unmodified	_ALDDPYENY_					0	0	0		ENSG00000085872|ENST00000546361|CHERP;ENST00000409035.1_1_19:16629978-16630065:-|nuORF	ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	MULTI-MSMS	A375_MHC_IP_R2	2	550.632568359375	2	550.232561	1098.45057	-0.92858	-0.00051094	0.73967	0.00040699	-0.18892	-0.00010395	550.2329390776944	65.493	0.60809	66.231	65.917	66.526	0.73811					19	11	2	0	0	0	0.41409	1	24829	24829		24.021	14.673	1	1901100			2522	1821	1640	1658	2466	2466					-0.09471727169579935
ALDDREPLH	9	Unmodified	_ALDDREPLH_					0	0	0			REV__ENSG00000135338|ENST00000369846|LCA5	REV__ENSG00000135338|ENST00000369846|LCA5	MULTI-MSMS	A375_MHC_IP_R1	1	533.6823120117188	2	533.269813	1064.52507	-0.45537	-0.00024283	1.6777	0.00089467	1.2223	0.00065183	533.2707088949356	68.97	0.65896	68.97	68.565	69.224	0					18	12	2	0	0	0	0.53367	1	25074	25074		18.146	1.2041	1	995700	+		2523	18845	1641	1659	2467	2467					-0.004609195675357114
ALDDRPQVL	9	Unmodified	_ALDDRPQVL_					0	0	0		ENSG00000173276|ENST00000310826|ZBTB21;ZBTB21|p.R583Gfs*18|1|0.49|ENSG00000173276|chr21:41992350-41992350|C/-|frameshift_variant;nc|ENSG00000173276|Q9ULJ3-2|ZBTB21	ENSG00000173276|ENST00000310826|ZBTB21	ENSG00000173276|ENST00000310826|ZBTB21	MULTI-SECPEP	A375_MHC_IP_R1	1	514.1825561523438	2	513.782556	1025.55056	-0.43591	-0.00022396	-0.31131	-0.00015994	-0.74721	-0.0003839	513.7824717576049	51.106	0.6612	51.106	50.814	51.475	0					25	12	3	0	0	0	0.43207	1	18116	18116		40.239	16.449	1	2733300			2524	7785	1642	1660	2468	2468					0.03880554954912441
ALDDRPQVL	9	Unmodified	_ALDDRPQVL_					0	0	0		ENSG00000173276|ENST00000310826|ZBTB21;ZBTB21|p.R583Gfs*18|1|0.49|ENSG00000173276|chr21:41992350-41992350|C/-|frameshift_variant;nc|ENSG00000173276|Q9ULJ3-2|ZBTB21	ENSG00000173276|ENST00000310826|ZBTB21	ENSG00000173276|ENST00000310826|ZBTB21	MULTI-SECPEP	A375_MHC_IP_R2	2	514.1820678710938	2	513.782556	1025.55056	-0.9371	-0.00048147	0.19297	9.9142E-05	-0.74414	-0.00038232	513.7821296419138	50.313	1.017	51.067	50.445	51.462	0.75406					27	19	3	0	0	0	0.16595	1	18921	18921		61.602	25.096	1	2967700			2525	7785	1642	1660	2469	2469					0.03880554954912441
ALDDYEHHY	9	Unmodified	_ALDDYEHHY_					0	0	0		ENST00000482153.1_1_10:135122453-135123793:+|nuORF;ENSG00000198546|ENST00000361518|ZNF511;nc|ENSG00000198546|Q8NB15-1|ZNF511	ENST00000482153.1_1_10:135122453-135123793:+|nuORF	ENST00000482153.1_1_10:135122453-135123793:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	388.5646667480469	3	388.164844	1161.4727	-0.21393	-8.3038E-05	0.38641	0.00014999	0.17249	6.6954E-05	388.16485860656917	29.548	0.29967	29.548	29.403	29.703	0					8	5	2	0	0	0	0.27064	1	9319	9319		32.786	24.341	1	10186000			2526	9280	1643	1661	2470	2470					-0.10157502701144949
ALDEKLLNI	9	Unmodified	_ALDEKLLNI_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1;ENST00000532560.5_1_8:145625727-145626379:-|nuORF	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-SECPEP	A375_MHC_IP_R1	1	515.2025756835938	2	514.802957	1027.59136	-0.72573	-0.00037361	2.8819	0.0014836	2.1562	0.00111	514.8028557678093	85.906	1.4703	85.906	85.159	86.629	0					32	18	3	0	0	0	0.090157	1	31506	31506		76.825	22.992	1	5547500			2527	1521	1644	1662	2471	2471					0.0786689627452688
ALDEKLLNI	9	Unmodified	_ALDEKLLNI_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1;ENST00000532560.5_1_8:145625727-145626379:-|nuORF	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-SECPEP	A375_MHC_IP_R2	2	515.2025146484375	2	514.802957	1027.59136	-0.62638	-0.00032246	0.073132	3.7648E-05	-0.55325	-0.00028482	514.802892486098	85.019	1.016	85.755	85.069	86.085	0.73602					18	10	2	0	0	0	0.025037	1	32324	32324		110.55	47.98	1	3071500			2528	1521	1644	1662	2472	2472					0.0786689627452688
ALDEPTTNL	9	Unmodified	_ALDEPTTNL_					0	0	0		ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50	ENSG00000113522|ENST00000378823|RAD50	ENSG00000113522|ENST00000378823|RAD50	MULTI-SECPEP	A375_MHC_IP_R1	1	487.6451721191406	2	487.245472	972.476391	-0.23218	-0.00011313	-0.28316	-0.00013797	-0.51535	-0.0002511	487.2452878477582	59.644	0.60937	59.644	59.346	59.955	0					20	11	2	0	0	0	0.35487	1	21439	21439		43.858	15.371	1	4203300			2529	3158	1645	1663	2473	2473					-0.010948329272878254
ALDEPTTNL	9	Unmodified	_ALDEPTTNL_					0	0	0		ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50	ENSG00000113522|ENST00000378823|RAD50	ENSG00000113522|ENST00000378823|RAD50	MULTI-SECPEP	A375_MHC_IP_R2	2	487.64495849609375	2	487.245472	972.476391	-0.96486	-0.00047012	-0.1617	-7.8789E-05	-1.1266	-0.00054891	487.2453240974799	58.919	0.50914	59.666	59.387	59.896	0.74714					18	9	2	0	0	0	0.14422	1	22261	22261		61.357	19.263	1	6184700			2530	3158	1645	1663	2474	2474					-0.010948329272878254
ALDETGKETF	10	Unmodified	_ALDETGKETF_					0	0	0		nc|ENSG00000215421|Q9C0G0-3|ZNF407;nc|ENSG00000215421|Q9C0G0-2|ZNF407;ENSG00000215421|ENST00000299687|ZNF407	nc|ENSG00000215421|Q9C0G0-3|ZNF407	nc|ENSG00000215421|Q9C0G0-3|ZNF407	MULTI-SECPEP	A375_MHC_IP_R1	1	370.3453674316406	3	370.848633	1109.52407	0.30377	0.00011265	1.4241	0.00052811	1.7278	0.00064076	370.8491998393951	19.954	0.45669	19.954	19.623	20.079	0					12	8	2	0	0	0	0.88918	1	4999	4999		11.518	4.4162	1	2577900			2531	9645	1646	1664	2475	2475					-0.02631178727074257
ALDEVFTKV	9	Unmodified	_ALDEVFTKV_					0	0	0		ENSG00000117691|ENST00000366988|NENF;ENST00000479589.5_1_1:212606272-212619345:+|nuORF	ENSG00000117691|ENST00000366988|NENF	ENSG00000117691|ENST00000366988|NENF	MULTI-MSMS	A375_MHC_IP_R2	2	511.67791748046875	2	511.281857	1020.54916	-0.77808	-0.00039782	-3.5331	-0.0018064	-4.3112	-0.0022043	511.278719934888	74.314	0.81275	75.052	74.706	75.519	0.73752					52	15	6	0	0	0	0.01185	1	28242	28242		93.938	46.189	1	15098000			2532	3507	1647	1665	2476	2476					0.03970920866152028
ALDFKLAAA	9	Unmodified	_ALDFKLAAA_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;nc|ENSG00000131503|Q8IWZ3-5|ANKHD1;nc|ENSG00000131503|Q8IWZ3-3|ANKHD1;nc|ENSG00000131503|Q8IWZ3-2|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	459.6795959472656	2	460.26601	918.517468	-0.24339	-0.00011202	0.046485	2.1395E-05	-0.19691	-9.0629E-05	460.26592437750935	75.589	0.35086	75.589	75.413	75.764	0					9	6	2	0	0	0	0.65527	1	27549	27549		12.241	1.4167	1	1503600			2533	4336	1648	1666	2477	2477					0.05494972902852169
ALDFKLAAA	9	Unmodified	_ALDFKLAAA_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;nc|ENSG00000131503|Q8IWZ3-5|ANKHD1;nc|ENSG00000131503|Q8IWZ3-3|ANKHD1;nc|ENSG00000131503|Q8IWZ3-2|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MATCH	A375_MHC_IP_R2	2		2	460.26601	918.517468	-0.48194	-0.00022182	0.086335	3.9737E-05	-0.3956	-0.00018208	460.26606948824934	74.716	0.30544	75.454	75.264	75.57	0.73752	-0.067555	9.6699E-06	NaN	12.241	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1084100			2534	4336	1648	1666							0.05494972902852169
ALDGFLFVV	9	Unmodified	_ALDGFLFVV_					0	0	0		nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENSG00000124151|ENST00000371998|NCOA3;nc|ENSG00000124151|Q9Y6Q9-4|NCOA3;NCOA3|p.P612Lfs*26|1|0.22|ENSG00000124151|chr20:47636220-47636220|C/-|frameshift_variant	nc|ENSG00000124151|Q9Y6Q9-2|NCOA3	nc|ENSG00000124151|Q9Y6Q9-2|NCOA3	MULTI-SECPEP	A375_MHC_IP_R2	2	980.0549926757812	1	980.545145	979.537869	0.1215	0.00011914	-0.22035	-0.00021607	-0.098852	-9.6928E-05	980.5447480032259	135.22	0.25569	135.36	135.25	135.51	0.13901					8	4	3	0	0	0	0.10969	1	53163	53163		67.344	13.768	1	5836400			2535	3873	1649	1667	2478	2478					0.047281435626587154
ALDGFLFVV	9	Unmodified	_ALDGFLFVV_					0	0	0		nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENSG00000124151|ENST00000371998|NCOA3;nc|ENSG00000124151|Q9Y6Q9-4|NCOA3;NCOA3|p.P612Lfs*26|1|0.22|ENSG00000124151|chr20:47636220-47636220|C/-|frameshift_variant	nc|ENSG00000124151|Q9Y6Q9-2|NCOA3	nc|ENSG00000124151|Q9Y6Q9-2|NCOA3	MULTI-MATCH	A375_MHC_IP_R1	1		1	980.545145	979.537869	-0.12539	-0.00012295	0.36945	0.00036227	0.24407	0.00023932	980.5452427356918	135.36	0.25247	135.36	135.18	135.44	0	-0.0025619	0.00044305	NaN	67.344	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9088100			2536	3873	1649	1667							0.047281435626587154
ALDGGFQMHY	10	Unmodified	_ALDGGFQMHY_					0	0	0		nc|ENSG00000255302|Q9Y6B2-2|EID1;ENSG00000255302|ENST00000530028|EID1	nc|ENSG00000255302|Q9Y6B2-2|EID1	nc|ENSG00000255302|Q9Y6B2-2|EID1	MULTI-MSMS	A375_MHC_IP_R1	1	570.1527709960938	2	569.752941	1137.49133	-0.071772	-4.0892E-05	-0.026654	-1.5186E-05	-0.098427	-5.6079E-05	569.7529225561831	69	0.66003	69	68.666	69.326	0					36	12	4	0	0	0	0.040108	1	25008	25008		78.728	55.992	1	8773200			2537	9888	1650	1668	2479	2479					-0.07191664330935055
ALDGGFQMHY	10	Unmodified	_ALDGGFQMHY_					0	0	0		nc|ENSG00000255302|Q9Y6B2-2|EID1;ENSG00000255302|ENST00000530028|EID1	nc|ENSG00000255302|Q9Y6B2-2|EID1	nc|ENSG00000255302|Q9Y6B2-2|EID1	MULTI-MSMS	A375_MHC_IP_R2	2	570.2567749023438	2	569.752941	1137.49133	-0.21066	-0.00012002	-0.084025	-4.7874E-05	-0.29468	-0.0001679	569.7528887008841	68.36	0.60736	69.095	68.816	69.423	0.73511					30	11	3	0	0	0	0.45919	1	25989	25989		30.637	19.813	1	9611300			2538	9888	1650	1668	2480	2480					-0.07191664330935055
ALDGGFQMHY	10	Oxidation (M)	_ALDGGFQM(Oxidation (M))HY_		ALDGGFQM(1)HY		ALDGGFQM(82)HY	0	0	1		nc|ENSG00000255302|Q9Y6B2-2|EID1;ENSG00000255302|ENST00000530028|EID1	nc|ENSG00000255302|Q9Y6B2-2|EID1	nc|ENSG00000255302|Q9Y6B2-2|EID1	MULTI-SECPEP	A375_MHC_IP_R1	1	578.1503295898438	2	577.750398	1153.48624	-0.34868	-0.00020145	0.14658	8.4689E-05	-0.2021	-0.00011676	577.7507920848439	46.895	0.512	46.895	46.647	47.159	0					20	9	3	0	0	0	0.099365	1	16490	16490		81.89	55.007	1	5721700			2539	9888	1650	1669	2481	2481		446			-0.08435968193566623
ALDGGFQMHY	10	Oxidation (M)	_ALDGGFQM(Oxidation (M))HY_		ALDGGFQM(1)HY		ALDGGFQM(64)HY	0	0	1		nc|ENSG00000255302|Q9Y6B2-2|EID1;ENSG00000255302|ENST00000530028|EID1	nc|ENSG00000255302|Q9Y6B2-2|EID1	nc|ENSG00000255302|Q9Y6B2-2|EID1	MULTI-SECPEP	A375_MHC_IP_R2	2	578.1505737304688	2	577.750398	1153.48624	-0.1003	-5.7946E-05	-0.010195	-5.8901E-06	-0.11049	-6.3836E-05	577.750636407825	46.2	0.50714	46.965	46.755	47.262	0.76519					23	9	3	0	0	0	0.17675	1	17329	17329		63.961	50.054	1	3495700			2540	9888	1650	1669	2482	2482		446			-0.08435968193566623
ALDGKIYEL	9	Unmodified	_ALDGKIYEL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-MSMS	A375_MHC_IP_R1	1	511.3064270019531	2	511.281857	1020.54916	-0.3112	-0.00015911	-0.18135	-9.2723E-05	-0.49255	-0.00025183	511.2817342749713	71.312	0.70917	71.312	71.005	71.715	0					33	13	3	0	0	0	0.0096967	1	25940	25940		110.79	18.139	1	27702000			2541	2226	1651	1670	2483	2483					0.039709208661292905
ALDGKIYEL	9	Unmodified	_ALDGKIYEL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-SECPEP	A375_MHC_IP_R2	2	511.6811828613281	2	511.281857	1020.54916	-0.72374	-0.00037004	-0.034451	-1.7614E-05	-0.75819	-0.00038765	511.28185729841084	70.541	0.6591	71.275	70.946	71.605	0.73421					45	12	5	0	0	0	0.011256	1	26693	26693		132.38	76.203	1	44432000			2542	2226	1651	1670	2484	2484					0.039709208661292905
ALDGRETDFY	10	Unmodified	_ALDGRETDFY_					0	0	0		nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-MSMS	A375_MHC_IP_R1	1	595.2220458984375	2	593.772385	1185.53022	-0.24629	-0.00014624	0.20139	0.00011958	-0.044901	-2.6661E-05	593.7724352845521	54.389	0.86015	54.389	54.013	54.873	0					47	16	4	0	0	0	0.56097	1	19451	19451		23.79	9.8837	1	38152000			2543	5433	1652	1671	2485	2485					-0.05512660495583077
ALDGRETDFY	10	Unmodified	_ALDGRETDFY_					0	0	0		nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-MSMS	A375_MHC_IP_R2	2	595.2216796875	2	593.772385	1185.53022	-1.0132	-0.00060161	0.38743	0.00023005	-0.62578	-0.00037157	593.7725747167099	53.761	0.81954	54.512	54.097	54.916	0.75105					42	15	4	0	0	0	0.60608	2	20298	20187;20298		20.415	11.821	1	37482000			2544	5433	1652	1671	2486;2487	2487					-0.05512660495583077
ALDGRLAGL	9	Unmodified	_ALDGRLAGL_					0	0	0			REV__ENST00000394487.4_1_9:120466806-120470508:+|nuORF	REV__ENST00000394487.4_1_9:120466806-120470508:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	443.6611633300781	2	443.261259	884.507966	-0.069307	-3.0721E-05	0.17809	7.8941E-05	0.10879	4.822E-05	443.26127483484635	60.25	0.45864	60.25	59.955	60.414	0					12	8	2	0	0	0	0.084766	1	21682	21682		53.404	0	1	1582100	+		2545	24309	1653	1672	2488	2488					0.0610920461731439
ALDGRLAGL	9	Unmodified	_ALDGRLAGL_					0	0	0			REV__ENST00000394487.4_1_9:120466806-120470508:+|nuORF	REV__ENST00000394487.4_1_9:120466806-120470508:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	443.6609802246094	2	443.261259	884.507966	-0.76558	-0.00033935	0.10403	4.611E-05	-0.66155	-0.00029324	443.2612916120181	59.338	0.45324	60.085	59.896	60.349	0.74714					14	8	2	0	0	0	0.084766	1	22474	22474		53.404	0	1	2194200	+		2546	24309	1653	1672	2489	2489					0.0610920461731439
ALDGRLAGL	9	Unmodified	_ALDGRLAGL_					0	0	0			REV__ENST00000394487.4_1_9:120466806-120470508:+|nuORF	REV__ENST00000394487.4_1_9:120466806-120470508:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	443.261259	884.507966	-0.069307	-3.0721E-05	0.17809	7.8941E-05	0.10879	4.822E-05	443.26127483484635	60.25	0.45864	60.25	59.955	60.414	0	0.082891	2.6136E-05	NaN	53.404	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1582100	+		2547	24309	1653	1672							0.0610920461731439
ALDIGPKP	8	Unmodified	_ALDIGPKP_					0	0	0			REV__CADPS2|p.M1172I|1|0.51|ENSG00000081803|chr7:122345670-122345670|C/T|missense_variant	REV__CADPS2|p.M1172I|1|0.51|ENSG00000081803|chr7:122345670-122345670|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	406.28363037109375	2	405.739628	809.464704	-0.1632	-6.6217E-05	1.0454	0.00042418	0.88225	0.00035796	405.7394796481507	72.212	0.96214	72.946	72.669	73.632	0.73421					26	18	2	0	0	0	0.77123	1	27487	27487		14.582	0	1	1496900	+		2548	15563	1654	1673	2490	2490					0.05235014840036456
ALDKATVLL	9	Unmodified	_ALDKATVLL_					0	0	0		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-MSMS	A375_MHC_IP_R1	1	472.6947021484375	2	472.294768	942.574983	0.031238	1.4754E-05	-0.1022	-4.8267E-05	-0.070958	-3.3513E-05	472.2946229992073	69.66	1.7289	69.66	69.173	70.902	0					97	33	5	0	0	0	0.012447	1	25223	25223		93.166	11.553	1	87934000			2549	5850	1655	1674	2491	2491					0.10139815108414041
ALDKATVLL	9	Unmodified	_ALDKATVLL_					0	0	0		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-MSMS	A375_MHC_IP_R2	2	472.6941223144531	2	472.294768	942.574983	-0.46666	-0.0002204	0.048975	2.313E-05	-0.41768	-0.00019727	472.29472673901057	68.714	1.4707	69.449	69.018	70.489	0.73511					79	28	4	0	0	0	0.020087	1	25945	25945		83.429	1.8157	1	91439000			2550	5850	1655	1674	2492	2492					0.10139815108414041
ALDLEIATY	9	Unmodified	_ALDLEIATY_					0	0	0		ENSG00000167768|ENST00000252244|KRT1;CON__P04264	ENSG00000167768|ENST00000252244|KRT1	ENSG00000167768|ENST00000252244|KRT1	MULTI-MSMS	A375_MHC_IP_R1	1	1008.8685302734375	1	1008.5248	1007.51753	0.44891	0.00045274	0.31228	0.00031494	0.76119	0.00076768	1008.5251226057843	108.08	0.66096	108.08	107.8	108.46	0					20	12	2	0	0	0	0.0099443	1	39678	39678		120.45	0	1	5292800		+	2551	590	1656	1675	2493	2493					0.01406928112191963
ALDLEIATY	9	Unmodified	_ALDLEIATY_					0	0	0		ENSG00000167768|ENST00000252244|KRT1;CON__P04264	ENSG00000167768|ENST00000252244|KRT1	ENSG00000167768|ENST00000252244|KRT1	MULTI-SECPEP	A375_MHC_IP_R2	2	1008.960693359375	1	1008.5248	1007.51753	-0.036773	-3.7087E-05	-0.34491	-0.00034785	-0.38168	-0.00038494	1008.5247707099024	107.35	0.61043	108.11	107.9	108.51	0.75436					18	11	2	0	0	0	0.4261	1	40682	40682		30.637	0	1	2907600		+	2552	590	1656	1675	2494	2494					0.01406928112191963
ALDMDDED	8	Unmodified	_ALDMDDED_					0	0	0		ENSG00000132467|ENST00000254803|UTP3	ENSG00000132467|ENST00000254803|UTP3	ENSG00000132467|ENST00000254803|UTP3	MSMS	A375_MHC_IP_R1	1	462.1720275878906	2	462.168573	922.322592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.09	1	133.09	132.59	133.59	0								0	0	0	0.16876	1	51325	51325		2.8892	0	1				2553	4412	1657	1676	2495	2495					-0.14167610755112037
ALDMEIHAY	9	Unmodified	_ALDMEIHAY_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000368298.2_1_1:156104977-156106341:+|nuORF;ENST00000496738.5_1_1:156104620-156106879:+|nuORF	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-MSMS	A375_MHC_IP_R1	1	532.149169921875	2	531.749867	1061.48518	-0.22591	-0.00012013	-0.31399	-0.00016696	-0.5399	-0.00028709	531.7495863995686	69.224	0.91336	69.224	68.717	69.631	0					31	17	3	0	0	0	0.39434	2	25095	25095;25127		34.102	20.196	1	5395200			2554	6442	1658	1677	2496;2497	2496					-0.04310182562448972
ALDMEIHAY	9	Unmodified	_ALDMEIHAY_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000368298.2_1_1:156104977-156106341:+|nuORF;ENST00000496738.5_1_1:156104620-156106879:+|nuORF	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-MSMS	A375_MHC_IP_R2	2	532.1492309570312	2	531.749867	1061.48518	-0.56209	-0.00029889	-0.28367	-0.00015084	-0.84576	-0.00044973	531.749658863559	68.511	0.86152	69.247	68.918	69.779	0.73511					30	16	3	0	0	0	0.12771	2	25947	25944;25947		60.39	38.643	1	6094100			2555	6442	1658	1677	2498;2499	2499					-0.04310182562448972
ALDMEIHAY	9	Oxidation (M)	_ALDM(Oxidation (M))EIHAY_		ALDM(1)EIHAY		ALDM(48)EIHAY	0	0	1		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000368298.2_1_1:156104977-156106341:+|nuORF;ENST00000496738.5_1_1:156104620-156106879:+|nuORF	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-SECPEP	A375_MHC_IP_R1	1	540.1470947265625	2	539.747324	1077.4801	-0.37245	-0.00020103	-0.61378	-0.00033129	-0.98624	-0.00053232	539.7470157170297	48.074	0.35435	48.074	47.92	48.274	0					10	6	2	0	0	0	0.28475	1	16959	16959		48.346	29.089	1	2120800			2556	6442	1658	1678	2500	2500		345			-0.055544864250805404
ALDMEIHAY	9	Oxidation (M)	_ALDM(Oxidation (M))EIHAY_		ALDM(1)EIHAY		ALDM(60)EIHAY	0	0	1		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000368298.2_1_1:156104977-156106341:+|nuORF;ENST00000496738.5_1_1:156104620-156106879:+|nuORF	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-SECPEP	A375_MHC_IP_R2	2	540.1470336914062	2	539.747324	1077.4801	-0.73126	-0.0003947	-0.38201	-0.00020619	-1.1133	-0.00060088	539.7471942427032	47.845	0.45472	48.607	48.378	48.833	0.76128					11	8	2	0	0	0	0.14105	1	17985	17985		60.39	34.99	1	2036700			2557	6442	1658	1678	2501	2501		345			-0.055544864250805404
ALDMEIHAY	9	Oxidation (M)	_ALDM(Oxidation (M))EIHAY_		ALDM(1)EIHAY		ALDM(67)EIHAY	0	0	1		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000368298.2_1_1:156104977-156106341:+|nuORF;ENST00000496738.5_1_1:156104620-156106879:+|nuORF	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-SECPEP	A375_MHC_IP_R2	2	540.1744995117188	2	539.747324	1077.4801	-0.68417	-0.00036928	-0.1502	-8.1069E-05	-0.83436	-0.00045035	539.7472211072117	47.423	0.35599	48.184	47.97	48.326	0.76128					11	6	2	0	0	0	0.10969	1	17778	17778		67.344	44.195	1	2324100			2558	6442	1658	1678	2502	2502		345			-0.055544864250805404
ALDMEIHAY	9	Oxidation (M)	_ALDM(Oxidation (M))EIHAY_					0	0	1		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000368298.2_1_1:156104977-156106341:+|nuORF;ENST00000496738.5_1_1:156104620-156106879:+|nuORF	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	539.747324	1077.4801	-0.24382	-0.0001316	-0.84348	-0.00045527	-1.0873	-0.00058687	539.7469185659818	48.603	0.50544	48.603	48.325	48.831	0	-0.0018858	-0.0002728	NaN	60.39	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1959200			2559	6442	1658	1678				345			-0.055544864250805404
ALDNDNYNL	9	Unmodified	_ALDNDNYNL_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-MSMS	A375_MHC_IP_R1	1	526.637939453125	2	526.238178	1050.4618	-0.50868	-0.00026769	-0.12514	-6.5855E-05	-0.63382	-0.00033354	526.238185132273	61.407	0.7644	61.407	60.973	61.737	0					33	14	3	0	0	0	0.018261	3	22138	22110;22113;22138		85.642	39.621	1	11869000			2560	6577	1659	1679	2503;2504;2505	2505					-0.06140905075426417
ALDNDNYNL	9	Unmodified	_ALDNDNYNL_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	526.238178	1050.4618	-0.75754	-0.00039865	-0.10913	-5.7428E-05	-0.86667	-0.00045607	526.2381861667878	60.694	0.96388	61.439	61.006	61.97	0.74503	0.016003	8.5217E-06	NaN	85.642	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9255000			2561	6577	1659	1679							-0.06140905075426417
ALDNGLFTL	9	Unmodified	_ALDNGLFTL_					0	0	0		ENST00000514482.1_1_4:190862182-190882061:+|nuORF;ENSG00000109536|ENST00000226798|FRG1;FRG1|p.G81R|1|0.06|ENSG00000109536|chr4:189952269-189952269|G/C|missense_variant;ENST00000278882.8_1_20:29623184-29624050:+|nuORF	ENST00000514482.1_1_4:190862182-190882061:+|nuORF	ENST00000514482.1_1_4:190862182-190882061:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	482.66082763671875	2	482.260925	962.507297	0.094711	4.5675E-05	-0.52846	-0.00025486	-0.43375	-0.00020918	482.2607807095356	127.14	0.45644	127.14	126.76	127.22	0					11	8	3	0	0	0	0.0098409	1	48669	48669		115.69	19.407	1	12920000			2562	2875	1660	1680	2506	2506					0.02454365177618456
ALDNGLFTL	9	Unmodified	_ALDNGLFTL_					0	0	0		ENST00000514482.1_1_4:190862182-190882061:+|nuORF;ENSG00000109536|ENST00000226798|FRG1;FRG1|p.G81R|1|0.06|ENSG00000109536|chr4:189952269-189952269|G/C|missense_variant;ENST00000278882.8_1_20:29623184-29624050:+|nuORF	ENST00000514482.1_1_4:190862182-190882061:+|nuORF	ENST00000514482.1_1_4:190862182-190882061:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	482.6611328125	2	482.260925	962.507297	-0.55403	-0.00026719	0.11259	5.4298E-05	-0.44144	-0.00021289	482.2609952999452	126.77	0.55412	127.03	126.6	127.16	0.26593					15	10	2	0	0	0	0.0094788	1	49627	49627		107.19	10.902	1	18667000			2563	2875	1660	1680	2507	2507					0.02454365177618456
ALDPGTRDSY	10	Unmodified	_ALDPGTRDSY_					0	0	0		ENSG00000119403|ENST00000373896|PHF19;nc|ENSG00000119403|Q5T6S3-3|PHF19;nc|ENSG00000119403|Q5T6S3-2|PHF19	ENSG00000119403|ENST00000373896|PHF19	ENSG00000119403|ENST00000373896|PHF19	MULTI-MSMS	A375_MHC_IP_R1	1	547.6692504882812	2	547.759278	1093.504	-0.97131	-0.00053204	0.0976	5.3462E-05	-0.87371	-0.00047858	547.7592835657922	29.466	0.5533	29.466	29.149	29.703	0					18	10	2	0	0	0	0.45806	1	9228	9228		30.703	14.554	1	10862000			2564	3591	1661	1681	2508	2508					-0.03900929667042874
ALDPIIHGL	9	Unmodified	_ALDPIIHGL_					0	0	0		nc|ENSG00000144724|P23470-2|PTPRG;ENSG00000144724|ENST00000474889|PTPRG	nc|ENSG00000144724|P23470-2|PTPRG	nc|ENSG00000144724|P23470-2|PTPRG	MULTI-MSMS	A375_MHC_IP_R1	1	475.1791076660156	2	474.779285	947.544017	-0.68284	-0.0003242	0.15816	7.5093E-05	-0.52468	-0.00024911	474.7792901269183	86.554	0.65822	86.554	86.274	86.933	0					34	12	4	0	0	0	0.1209	1	31710	31710		46.921	0.89992	1	23926000			2565	5509	1662	1682	2509	2509					0.06814661794192034
ALDPIIHGL	9	Unmodified	_ALDPIIHGL_					0	0	0		nc|ENSG00000144724|P23470-2|PTPRG;ENSG00000144724|ENST00000474889|PTPRG	nc|ENSG00000144724|P23470-2|PTPRG	nc|ENSG00000144724|P23470-2|PTPRG	MULTI-MSMS	A375_MHC_IP_R2	2	474.79852294921875	2	474.779285	947.544017	-0.37098	-0.00017613	-0.11129	-5.2839E-05	-0.48227	-0.00022897	474.77918678400783	85.684	0.91639	86.42	86.085	87.001	0.73601					40	17	4	0	0	0	0.27971	1	32645	32645		32.117	1.8922	1	20840000			2566	5509	1662	1682	2510	2510					0.06814661794192034
ALDPKANFST	10	Unmodified	_ALDPKANFST_					0	0	0		nc|ENSG00000061938|Q07912-3|TNK2;ENSG00000061938|ENST00000672887|TNK2;ENST00000420716.2_1_3:195591054-195595875:-|nuORF;nc|ENSG00000061938|Q07912|TNK2	nc|ENSG00000061938|Q07912-3|TNK2	nc|ENSG00000061938|Q07912-3|TNK2	MULTI-SECPEP	A375_MHC_IP_R2	2	532.67431640625	2	532.274564	1062.53457	-0.80265	-0.00042723	-0.23376	-0.00012442	-1.0364	-0.00055165	532.2745785097741	40.537	0.40733	41.311	41.082	41.489	0.77451					16	7	4	0	0	0	0.49165	1	15033	15033		42.312	21.898	1	7307800			2567	1323	1663	1683	2511	2511					0.0058084871798200766
ALDPKNNLV	9	Unmodified	_ALDPKNNLV_					0	0	0		nc|ENSG00000145730|P19021-2|PAM;nc|ENSG00000145730|P19021-4|PAM;nc|ENSG00000145730|P19021-3|PAM;nc|ENSG00000145730|P19021-6|PAM;ENSG00000145730|ENST00000438793|PAM;nc|ENSG00000145730|P19021-5|PAM;PAM|p.G516E|1|0.42|ENSG00000145730|chr5:102990335-102990335|G/A|missense_variant	nc|ENSG00000145730|P19021-2|PAM	nc|ENSG00000145730|P19021-2|PAM	MULTI-SECPEP	A375_MHC_IP_R2	2	492.6791687011719	2	492.279649	982.544745	-0.45457	-0.00022378	-0.018969	-9.3378E-06	-0.47354	-0.00023311	492.27968110589677	42.466	0.50986	43.238	42.962	43.472	0.7724					13	9	2	0	0	0	0.46045	1	15813	15813		29.082	15.176	1	1538200			2568	5575	1664	1684	2512	2512					0.052774564432297666
ALDPNAWHGKL	11	Unmodified	_ALDPNAWHGKL_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	A375_MHC_IP_R2	2	408.6514892578125	3	407.884012	1220.63021	-0.11252	-4.5893E-05	0.32105	0.00013095	0.20854	8.5059E-05	407.884291325667	55.05	0.509	55.801	55.678	56.187	0.75075					10	9	2	0	0	0	0.98734	1	20814	20814		7.4771	3.3604	1	1242300	+		2569	18422	1665	1685	2513	2513					0.028716216289012664
ALDPNGTRV	9	Unmodified	_ALDPNGTRV_					0	0	0		ENSG00000141570|ENST00000269385|CBX8	ENSG00000141570|ENST00000269385|CBX8	ENSG00000141570|ENST00000269385|CBX8	MULTI-SECPEP	A375_MHC_IP_R1	1	472.1536560058594	2	471.753798	941.493044	-0.62217	-0.00029351	0.25314	0.00011942	-0.36903	-0.00017409	471.75382459566606	28.012	0.40167	28.012	27.836	28.238	0					13	7	2	0	0	0	0.34746	1	8587	8587		45.7	13.394	1	5637000			2570	5259	1666	1686	2514	2514					0.019957127493285043
ALDPNIATL	9	Unmodified	_ALDPNIATL_					0	0	0		ENST00000520580.5_1_5:65455027-65458421:+|nuORF;nc|ENSG00000153914|Q8WXA9|SREK1;ENSG00000153914|ENST00000334121|SREK1	ENST00000520580.5_1_5:65455027-65458421:+|nuORF	ENST00000520580.5_1_5:65455027-65458421:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	927.4615478515625	1	927.514573	926.507297	-0.20243	-0.00018776	-1.0959	-0.0010164	-1.2983	-0.0012042	927.5144138381006	92.218	0.60719	92.957	92.734	93.341	0.73902					36	11	4	0	0	0	0.032333	1	35024	35024		72.968	23.035	1	12782000			2571	6047	1667	1687	2515	2515					0.04110365177609765
ALDPQDRKW	9	Unmodified	_ALDPQDRKW_					0	0	0		nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	MULTI-SECPEP	A375_MHC_IP_R1	1	377.2649841308594	3	376.864729	1127.57236	0.37277	0.00014048	0.12352	4.6552E-05	0.49629	0.00018703	376.864769955158	31.506	0.71036	31.506	31.211	31.921	0					24	13	2	0	0	0	0.4465	1	10081	10081		29.437	0	1	7617900			2572	4765	1668	1688	2516	2516					0.013673597034767226
ALDQCSTASL	10	Unmodified	_ALDQCSTASL_					0	0	0			REV__NLRP13|p.A825T|1|0.53|ENSG00000173572|chr19:55905087-55905087|C/T|missense_variant	REV__NLRP13|p.A825T|1|0.53|ENSG00000173572|chr19:55905087-55905087|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	505.1365966796875	2	504.736957	1007.45936	-0.65392	-0.00033006	-0.10251	-5.1743E-05	-0.75644	-0.0003818	504.73684688272357	73.215	0.96876	73.951	73.53	74.499	0.73541					52	18	4	0	0	0	0.91556	1	27741	27741		3.2813	0	1	19342000	+		2573	27615	1669	1689	2517	2517					-0.04407076804739063
ALDQCSTASL	10	Unmodified	_ALDQCSTASL_					0	0	0			REV__NLRP13|p.A825T|1|0.53|ENSG00000173572|chr19:55905087-55905087|C/T|missense_variant	REV__NLRP13|p.A825T|1|0.53|ENSG00000173572|chr19:55905087-55905087|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	504.736957	1007.45936	-0.37634	-0.00018995	-0.24893	-0.00012564	-0.62527	-0.0003156	504.73677028208124	73.969	1.0638	73.969	73.336	74.4	0	0.0092428	-8.8798E-05	NaN	3.2813	53	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24338000	+		2574	27615	1669	1689							-0.04407076804739063
ALDQFQEKY	9	Unmodified	_ALDQFQEKY_					0	0	0		ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-3|UBA6;ENST00000429659.7_1_4:68528855-68528909:-|nuORF	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	MULTI-SECPEP	A375_MHC_IP_R1	1	571.6796264648438	2	571.279846	1140.54514	-0.25009	-0.00014287	0.46588	0.00026615	0.21579	0.00012328	571.2800508030751	47.436	0.70896	47.436	47.211	47.92	0					24	13	3	0	0	0	0.33428	1	16682	16682		63.227	63.227	1	7018900			2575	1123	1670	1690	2518	2518					-0.019511686275791362
ALDQFQEKY	9	Unmodified	_ALDQFQEKY_					0	0	0		ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-3|UBA6;ENST00000429659.7_1_4:68528855-68528909:-|nuORF	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	MULTI-SECPEP	A375_MHC_IP_R2	2	571.6793823242188	2	571.279846	1140.54514	-0.11202	-6.3996E-05	-0.17927	-0.00010241	-0.29129	-0.00016641	571.2795689358518	46.772	0.61073	47.533	47.206	47.817	0.76128					21	11	3	0	0	0	0.33428	1	17519	17519		63.227	63.227	1	5895700			2576	1123	1670	1690	2519	2519					-0.019511686275791362
ALDRDNFEL	9	Unmodified	_ALDRDNFEL_					0	0	0		nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-2|KIFAP3	nc|ENSG00000075945|Q92845-2|KIFAP3	MULTI-SECPEP	A375_MHC_IP_R1	1	547.1695556640625	2	546.769645	1091.52474	-0.78809	-0.00043091	0.50008	0.00027343	-0.28801	-0.00015747	546.7698578720707	66.866	1.3281	66.866	66.275	67.603	0					55	25	3	0	0	0	0.061442	1	24086	24086		82.529	54.901	1	18068000			2577	1626	1671	1691	2520	2520					-0.017363392873676275
ALDRDNFEL	9	Unmodified	_ALDRDNFEL_					0	0	0		nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-2|KIFAP3	nc|ENSG00000075945|Q92845-2|KIFAP3	MULTI-MSMS	A375_MHC_IP_R2	2	547.1695556640625	2	546.769645	1091.52474	-0.97558	-0.00053342	0.16954	9.2701E-05	-0.80604	-0.00044072	546.7697408992092	66.058	1.4268	66.796	66.172	67.599	0.73812					61	27	3	0	0	0	0.029064	2	24901	24901;24956		75.761	33.921	1	15104000			2578	1626	1671	1691	2521;2522	2521					-0.017363392873676275
ALDRGTAQY	9	Unmodified	_ALDRGTAQY_					0	0	0		ENSG00000174080|ENST00000310325|CTSF;ENST00000527141.5_1_11:66331945-66334941:-|nuORF	ENSG00000174080|ENST00000310325|CTSF	ENSG00000174080|ENST00000310325|CTSF	MULTI-MSMS	A375_MHC_IP_R1	1	498.1507263183594	2	497.751256	993.487959	-0.4286	-0.00021333	-0.45831	-0.00022813	-0.88691	-0.00044146	497.75096502743264	24.815	0.45686	24.815	24.647	25.104	0					11	8	2	0	0	0	0.082375	1	7166	7166		53.833	22.564	1	5411000			2579	7853	1672	1692	2523	2523					-0.00904591113294373
ALDRQTATQLL	11	Unmodified	_ALDRQTATQLL_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000485706.5_1_9:136216467-136216912:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-SECPEP	A375_MHC_IP_R2	2	614.9415283203125	2	615.346052	1228.67755	-0.94718	-0.00058284	0.90222	0.00055518	-0.044963	-2.7668E-05	615.3463471213498	60.06	0.25214	60.807	60.653	60.906	0.74714					6	4	2	0	0	0	0.92067	1	22736	22736		3.8763	0	1	1080000			2580	5729	1673	1693	2524	2524					0.07235856109241467
ALDSGAFQSV	10	Unmodified	_ALDSGAFQSV_					0	0	0		nc|ENSG00000111726|Q8NFW8-2|CMAS;ENSG00000111726|ENST00000229329|CMAS	nc|ENSG00000111726|Q8NFW8-2|CMAS	nc|ENSG00000111726|Q8NFW8-2|CMAS	MULTI-SECPEP	A375_MHC_IP_R1	1	498.1460266113281	2	497.745639	993.476725	-0.17336	-8.6287E-05	0.56156	0.00027951	0.3882	0.00019323	497.74589252188423	72.06	0.55618	72.06	71.715	72.271	0					14	10	2	0	0	0	0.37864	1	26226	26226		45.7	24.163	1	2243500			2581	3023	1674	1694	2525	2525					-0.020274132074177942
ALDSGAFQSV	10	Unmodified	_ALDSGAFQSV_					0	0	0		nc|ENSG00000111726|Q8NFW8-2|CMAS;ENSG00000111726|ENST00000229329|CMAS	nc|ENSG00000111726|Q8NFW8-2|CMAS	nc|ENSG00000111726|Q8NFW8-2|CMAS	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	497.745639	993.476725	-0.76994	-0.00038323	0.24049	0.0001197	-0.52945	-0.00026353	497.74584975872625	71.371	0.65875	72.105	71.857	72.516	0.73421	0.022652	-0.00012519	NaN	57.722	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1149200			2582	3023	1674	1694							-0.020274132074177942
ALDSGASLLHL	11	Unmodified	_ALDSGASLLHL_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	MULTI-SECPEP	A375_MHC_IP_R1	1	549.203125	2	548.803488	1095.59242	-0.54678	-0.00030008	-0.10416	-5.7163E-05	-0.65094	-0.00035724	548.803406287119	93.871	0.75792	93.871	93.533	94.291	0					34	14	3	0	0	0	0.013847	1	34485	34485		96.111	52.339	1	7247700			2583	8491	1675	1695	2526	2526					0.048451106434413305
ALDSGASLLHL	11	Unmodified	_ALDSGASLLHL_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	MULTI-SECPEP	A375_MHC_IP_R2	2	549.2030639648438	2	548.803488	1095.59242	-0.70252	-0.00038554	0.40465	0.00022207	-0.29787	-0.00016347	548.8036541530805	93.028	0.71107	93.767	93.443	94.154	0.73902					35	13	4	0	0	0	0.013847	1	35342	35342		118.89	40.167	1	9449300			2584	8491	1675	1695	2527	2527					0.048451106434413305
ALDSHILDY	9	Unmodified	_ALDSHILDY_					0	0	0		ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	MULTI-SECPEP	A375_MHC_IP_R1	1	524.1605834960938	2	523.761289	1045.50803	-0.49492	-0.00025922	0.35696	0.00018696	-0.13796	-7.2256E-05	523.7613657560853	73.462	1.672	73.462	72.728	74.4	0					72	32	4	0	0	0	0.030624	1	26694	26694		100.37	36.135	1	33647000			2585	4549	1676	1696	2528	2528					-0.012908401733284336
ALDSHILDY	9	Unmodified	_ALDSHILDY_					0	0	0		ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	MULTI-SECPEP	A375_MHC_IP_R2	2	524.1607666015625	2	523.761289	1045.50803	-0.61077	-0.0003199	-0.15758	-8.2536E-05	-0.76835	-0.00040243	523.761144465524	72.668	1.3715	73.404	72.922	74.294	0.73541					67	26	4	0	0	0	0.3213	1	27542	27542		37.974	3.8716	1	29430000			2586	4549	1676	1696	2529	2529					-0.012908401733284336
ALDSHILDYY	10	Unmodified	_ALDSHILDYY_					0	0	0		ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	MULTI-SECPEP	A375_MHC_IP_R2	2	605.69287109375	2	605.292953	1208.57135	-0.35267	-0.00021347	0.97275	0.0005888	0.62008	0.00037533	605.7945691711948	88.789	0.75786	89.521	89.128	89.886	0.7318					24	14	3	0	0	0	0.67395	1	33834	33834		52.268	31.815	1	3033700			2587	4549	1677	1697	2530	2530					-0.024588994560645006
ALDSTNVEA	9	Unmodified	_ALDSTNVEA_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-SECPEP	A375_MHC_IP_R1	1	460.6199951171875	2	460.221997	918.429441	-0.4681	-0.00021543	-0.25828	-0.00011887	-0.72638	-0.0003343	460.2217917449336	36.494	0.7617	36.494	36.084	36.845	0					34	14	4	0	0	0	0.16676	1	12183	12183		41.84	5.3334	1	13859000			2588	2469	1678	1698	2531	2531					-0.03303692478425546
ALDTAGLFRG	10	Unmodified	_ALDTAGLFRG_					0	0	0		ENST00000305103.3_1_8:146076679-146078290:-|nuORF	ENST00000305103.3_1_8:146076679-146078290:-|nuORF	ENST00000305103.3_1_8:146076679-146078290:-|nuORF	MSMS	A375_MHC_IP_R2	2	510.6866149902344	2	510.777274	1019.53999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.75	1	100.51	100.01	101.01	0.76278								0	0	0	0.14862	1	37836	37836		20.454	2.3073	1				2589	10568	1679	1699	2532	2532					0.031005723004795982
ALDTAGLFRG	10	Unmodified	_ALDTAGLFRG_					0	0	0		ENST00000305103.3_1_8:146076679-146078290:-|nuORF	ENST00000305103.3_1_8:146076679-146078290:-|nuORF	ENST00000305103.3_1_8:146076679-146078290:-|nuORF	MSMS	A375_MHC_IP_R2	2	510.6758728027344	2	510.777274	1019.53999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.842	1	100.6	100.1	101.1	0.76278								0	0	0	0.14601	1	37870	37870		25.399	0.72543	1				2590	10568	1679	1699	2533	2533					0.031005723004795982
ALDTGWNEL	9	Unmodified	_ALDTGWNEL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R1	1	510.1454772949219	2	509.745639	1017.47673	-0.40742	-0.00020768	-0.64171	-0.00032711	-1.0491	-0.00053479	510.2462939267471	98.505	1.3197	98.505	97.999	99.319	0					32	25	2	0	0	0	0.24548	1	36230	36230		43.858	13.222	1	1463400			2591	3298	1680	1700	2534	2534					-0.03131413207438527
ALDTGWNEL	9	Unmodified	_ALDTGWNEL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	A375_MHC_IP_R2	2	1019.4251708984375	1	1018.484	1017.47673	-0.047294	-4.8168E-05	-0.79027	-0.00080487	-0.83756	-0.00085304	1018.4830571851428	97.855	0.45909	98.611	98.381	98.84	0.75586					14	8	2	0	0	0	0.34064	1	37141	37141		27.629	9.4825	1	2578300			2592	3298	1680	1700	2535	2535					-0.03131413207438527
ALDTGWNEL	9	Unmodified	_ALDTGWNEL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MATCH	A375_MHC_IP_R1	1		1	1018.484	1017.47673	0.21182	0.00021574	-0.80538	-0.00082027	-0.59356	-0.00060453	1018.4831651128741	98.633	0.46144	98.633	98.352	98.813	0	0.011077	-4.4667E-06	NaN	27.629	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3268500			2593	3298	1680	1700							-0.03131413207438527
ALDTGWNEL	9	Unmodified	_ALDTGWNEL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MATCH	A375_MHC_IP_R2	2		2	509.745639	1017.47673	-0.82693	-0.00042153	-0.37446	-0.00019088	-1.2014	-0.00061241	509.74577429210433	97.806	1.0173	98.562	97.923	98.941	0.75586	0.028583	0.00017871	NaN	43.858	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1099700			2594	3298	1680	1700							-0.03131413207438527
ALDTIKQY	8	Unmodified	_ALDTIKQY_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B;ENSG00000130477|ENST00000519716|UNC13A	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	A375_MHC_IP_R2	2	476.64215087890625	2	476.260925	950.507297	-1.0946	-0.00052133	-3.3703	-0.0016052	-4.4649	-0.0021265	476.25973337015256	53.233	0.9669	53.984	53.487	54.454	0.75105					26	18	2	0	0	0	0.78043	1	20089	20089		40.449	9.812	1	1437800			2595	9308	1681	1701	2536	2536					0.030063651776117695
ALDTKIGRY	9	Unmodified	_ALDTKIGRY_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-SECPEP	A375_MHC_IP_R1	1	518.9564208984375	2	518.792924	1035.57129	-0.55658	-0.00028875	-0.035335	-1.8331E-05	-0.59191	-0.00030708	518.7929222477792	31.266	0.81028	31.266	30.908	31.718	0					32	15	3	0	0	0	0.27114	1	10075	10075		38.615	14.594	1	5373200			2596	6011	1682	1702	2537	2537					0.05493145334571636
ALDTSNVMV	9	Oxidation (M)	_ALDTSNVM(Oxidation (M))V_		ALDTSNVM(1)V		ALDTSNVM(59)V	0	0	1		ENSG00000203485|ENST00000392634|INF2;nc|ENSG00000203485|Q27J81-2|INF2;nc|ENSG00000203485|Q27J81-3|INF2	ENSG00000203485|ENST00000392634|INF2	ENSG00000203485|ENST00000392634|INF2	MULTI-MSMS	A375_MHC_IP_R2	2	483.6336975097656	2	483.23405	964.453547	-0.82334	-0.00039787	-0.021609	-1.0442E-05	-0.84495	-0.00040831	483.23396473773636	54.576	0.76012	55.327	54.763	55.523	0.75075					25	14	2	0	0	0	0.064406	3	20582	20449;20582;20601		58.679	14.816	1	1712300			2597	9388	1683	1703	2538;2539;2540	2539		434			-0.030101753163989997
ALDVANKIGII	11	Unmodified	_ALDVANKIGII_					0	0	0		ENST00000471152.1_2_3:161146917-161147007:-|nuORF;ENST00000498752.1_1_11:43740306-43740693:+|nuORF;ENST00000467573.1_1_21:40499576-40499963:+|nuORF;ENSG00000198242|ENST00000422514|RPL23A	ENST00000471152.1_2_3:161146917-161147007:-|nuORF	ENST00000471152.1_2_3:161146917-161147007:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	563.643798828125	2	563.845156	1125.67576	-0.40461	-0.00022814	0.26861	0.00015146	-0.136	-7.6684E-05	563.8451456246493	90.451	0.50748	91.185	90.804	91.311	0.7345					13	9	2	0	0	0	0.82239	1	34375	34375		49.527	21.898	1	1083500			2598	9246	1684	1704	2541	2541					0.11794847091277916
ALDVEPYRY	9	Unmodified	_ALDVEPYRY_					0	0	0		GRIK2|p.E365Rfs*11|1|0.25|ENSG00000164418|chr6:101799784-101799784|T/-|frameshift_variant;nc|ENSG00000164418|Q13002-3|GRIK2;nc|ENSG00000164418|Q13002-6|GRIK2;nc|ENSG00000164418|Q13002-7|GRIK2;nc|ENSG00000164418|Q13002-4|GRIK2;nc|ENSG00000164418|Q13002-2|GRIK2;nc|ENSG00000164418|Q13002-5|GRIK2;ENSG00000164418|ENST00000369134|GRIK2	GRIK2|p.E365Rfs*11|1|0.25|ENSG00000164418|chr6:101799784-101799784|T/-|frameshift_variant	GRIK2|p.E365Rfs*11|1|0.25|ENSG00000164418|chr6:101799784-101799784|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	563.6825561523438	2	563.282389	1124.55022	-0.85612	-0.00048224	-0.15947	-8.9829E-05	-1.0156	-0.00057207	563.2826501411599	58.531	0.56181	59.28	58.929	59.491	0.74894					14	10	2	0	0	0	0.14922	1	22145	22145		41.84	23.693	1	1339900			2599	6837	1685	1705	2542	2542					-0.007068647649475679
ALDVEPYRY	9	Unmodified	_ALDVEPYRY_					0	0	0		GRIK2|p.E365Rfs*11|1|0.25|ENSG00000164418|chr6:101799784-101799784|T/-|frameshift_variant;nc|ENSG00000164418|Q13002-3|GRIK2;nc|ENSG00000164418|Q13002-6|GRIK2;nc|ENSG00000164418|Q13002-7|GRIK2;nc|ENSG00000164418|Q13002-4|GRIK2;nc|ENSG00000164418|Q13002-2|GRIK2;nc|ENSG00000164418|Q13002-5|GRIK2;ENSG00000164418|ENST00000369134|GRIK2	GRIK2|p.E365Rfs*11|1|0.25|ENSG00000164418|chr6:101799784-101799784|T/-|frameshift_variant	GRIK2|p.E365Rfs*11|1|0.25|ENSG00000164418|chr6:101799784-101799784|T/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	563.282389	1124.55022	-0.45482	-0.00025619	0.43847	0.00024698	-0.016351	-9.2103E-06	563.2829050683229	59.236	0.40652	59.236	58.99	59.397	0	-0.022303	0.00045302	NaN	41.84	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1802300			2600	6837	1685	1705							-0.007068647649475679
ALDVPAESL	9	Unmodified	_ALDVPAESL_					0	0	0			REV__ENST00000557830.1_1_14:24710868-24711254:-|nuORF	REV__ENST00000557830.1_1_14:24710868-24711254:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	457.2890319824219	2	457.745108	913.475663	-0.33299	-0.00015243	-0.26433	-0.000121	-0.59733	-0.00027342	457.7448496580649	70.742	0.55656	71.477	71.149	71.706	0.73421					15	10	2	0	0	0	0.43707	1	26789	26789		28.487	0	1	1575600	+		2601	16968	1686	1706	2543	2543					0.015463724236610688
ALDVPNTAF	9	Unmodified	_ALDVPNTAF_					0	0	0		nc|ENSG00000150527|Q96PC5-11|MIA2;nc|ENSG00000150527|Q96PC5-13|MIA2;nc|ENSG00000150527|Q96PC5-5|MIA2;nc|ENSG00000150527|Q96PC5-8|MIA2;nc|ENSG00000150527|Q96PC5-10|MIA2;nc|ENSG00000150527|Q96PC5-9|MIA2;nc|ENSG00000150527|Q96PC5-14|MIA2;nc|ENSG00000150527|Q96PC5-7|MIA2;nc|ENSG00000150527|Q96PC5-12|MIA2;ENSG00000150527|ENST00000640607|MIA2;ENST00000416709.1_1_6:168687664-168688738:-|nuORF;nc|ENSG00000150527|Q96PC5-6|MIA2	nc|ENSG00000150527|Q96PC5-11|MIA2	nc|ENSG00000150527|Q96PC5-11|MIA2	MULTI-MSMS	A375_MHC_IP_R1	1	474.6452941894531	2	474.245275	946.475997	-0.26631	-0.0001263	-0.17233	-8.1728E-05	-0.43865	-0.00020803	474.2452000483244	71.688	0.55275	71.688	71.415	71.968	0					14	10	2	0	0	0	0.29981	1	26083	26083		30.637	5.2372	1	3195500			2602	5848	1687	1707	2544	2544					0.0006179214351504925
ALEAQLRGV	9	Unmodified	_ALEAQLRGV_					0	0	0			REV__nc|ENSG00000088899|O60299-2|LZTS3	REV__nc|ENSG00000088899|O60299-2|LZTS3	MULTI-SECPEP	A375_MHC_IP_R2	2	479.463623046875	2	478.779816	955.545079	-0.76885	-0.00036811	-2.0618	-0.00098717	-2.8307	-0.0013553	478.7788023323222	54.504	0.40364	55.255	54.967	55.37	0.75075					10	7	2	0	0	0	0.55359	1	20581	20581		21.747	1.293	1	635620	+		2603	16897	1688	1708	2545	2545					0.06552876163095789
ALEAVFIH	8	Unmodified	_ALEAVFIH_					0	0	0		ENSG00000225190|ENST00000430334|PLEKHM1;ENST00000578036.5_1_17:62801160-62825332:-|nuORF;ENST00000584585.1_1_17:62817020-62825332:-|nuORF;ENST00000580919.5_1_17:62811233-62825332:-|nuORF;ENST00000397718.8_1_17:62816508-62825332:-|nuORF	ENSG00000225190|ENST00000430334|PLEKHM1	ENSG00000225190|ENST00000430334|PLEKHM1	MULTI-SECPEP	A375_MHC_IP_R2	2	449.6738586425781	2	450.252903	898.491253	-0.36786	-0.00016563	-2.0252	-0.00091184	-2.393	-0.0010775	450.2521244623619	45.359	0.86627	46.124	45.437	46.303	0.76519					18	16	2	0	0	0	0.972	1	16726	16726		8.5933	0.68312	1	1305000			2604	9695	1689	1709	2546	2546					0.03794703731375648
ALECGGGFAY	10	Unmodified	_ALECGGGFAY_					0	0	0			REV__ENSG00000127884|ENST00000368547|ECHS1	REV__ENSG00000127884|ENST00000368547|ECHS1	MSMS	A375_MHC_IP_R2	2	494.2154846191406	2	494.21566	986.416767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.581	1	82.324	81.824	82.824	0.74293								0	0	0	0.15283	1	30983	30983		11.64	0	1		+		2605	18433	1690	1710	2547	2547					-0.07698427142315722
ALEDLRQGL	9	Unmodified	_ALEDLRQGL_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-SECPEP	A375_MHC_IP_R1	1	508.18170166015625	2	507.782556	1013.55056	-0.37568	-0.00019076	-1.4957	-0.00075949	-1.8714	-0.00095025	507.7817634886014	61.789	0.76585	61.789	61.483	62.249	0					28	14	3	0	0	0	0.087712	1	22261	22261		57.722	17.772	1	6014500			2606	3526	1691	1711	2548	2548					0.04432554954905754
ALEEEAQASRL	11	Unmodified	_ALEEEAQASRL_					0	0	0			REV__ENSG00000078814|ENST00000262873|MYH7B	REV__ENSG00000078814|ENST00000262873|MYH7B	MULTI-MSMS	A375_MHC_IP_R1	1	608.7053833007812	2	608.812042	1215.60953	-0.31626	-0.00019254	-3.2696	-0.0019906	-3.5859	-0.0021831	609.3127919171469	63.819	0.50986	63.819	63.58	64.09	0					22	9	3	0	0	0	0.73016	1	23122	23122		8.7454	0.15213	1	3290600	+		2607	16720	1692	1712	2549	2549					0.010349864585805335
ALEEELKSV	9	Unmodified	_ALEEELKSV_					0	0	0			REV__ENSG00000143079|ENST00000271277|CTTNBP2NL	REV__ENSG00000143079|ENST00000271277|CTTNBP2NL	MULTI-SECPEP	A375_MHC_IP_R2	2	509.6457214355469	2	509.276772	1016.53899	-0.62993	-0.00032081	-0.30208	-0.00015384	-0.93201	-0.00047465	509.27668811752363	87.045	0.50712	87.778	87.56	88.067	0.733					12	9	2	0	0	0	0.69504	1	33128	33128		12.532	0	1	954000	+		2608	19334	1693	1713	2550	2550					0.031383131409029374
ALEELLGTAL	10	Unmodified	_ALEELLGTAL_					0	0	0		nc|ENSG00000173338|Q9Y2U2-2|KCNK7;nc|ENSG00000173338|Q9Y2U2-3|KCNK7;ENSG00000173338|ENST00000340313|KCNK7	nc|ENSG00000173338|Q9Y2U2-2|KCNK7	nc|ENSG00000173338|Q9Y2U2-2|KCNK7	MULTI-SECPEP	A375_MHC_IP_R1	1	515.6944580078125	2	515.294965	1028.57538	-0.43482	-0.00022406	0.026462	1.3636E-05	-0.40836	-0.00021042	515.294936804577	79.335	0.81807	79.335	78.96	79.778	0					40	15	4	0	0	0	0.082288	1	28905	28905		74.929	5.8241	1	28376000			2609	7791	1694	1714	2551	2551					0.06223190037621862
ALEGFFESL	9	Unmodified	_ALEGFFESL_					0	0	0		ENSG00000080511|ENST00000591589|RDH8	ENSG00000080511|ENST00000591589|RDH8	ENSG00000080511|ENST00000591589|RDH8	MSMS	A375_MHC_IP_R2	2	506.7497253417969	2	506.752933	1011.49131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.961	1	76.702	76.202	77.202	0.74052								0	0	0	0.15486	1	28836	28836		11.64	0.52583	1				2610	1715	1695	1715	2552	2552					-0.01397341059282553
ALEKLRHK	8	Unmodified	_ALEKLRHK_					0	0	0		nc|ENSG00000126602|Q12931-2|TRAP1;ENSG00000126602|ENST00000246957|TRAP1	nc|ENSG00000126602|Q12931-2|TRAP1	nc|ENSG00000126602|Q12931-2|TRAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	498.2296447753906	2	497.811451	993.608348	-0.62037	-0.00030883	0.10075	5.0156E-05	-0.51962	-0.00025867	497.81148544204603	39.68	0.40575	39.68	39.491	39.896	0					12	7	2	0	0	0	0.972	1	13553	13553		8.5933	0	1	2505700			2611	4052	1696	1716	2553	2553					0.11128861670999868
ALENEVDQRLQ	11	Unmodified	_ALENEVDQRLQ_					0	0	0			REV__nc|ENSG00000204130|Q8WXA3-5|RUFY2	REV__nc|ENSG00000204130|Q8WXA3-5|RUFY2	MULTI-MSMS	A375_MHC_IP_R1	1	658.2357177734375	2	657.836048	1313.65754	-0.31649	-0.0002082	-0.050225	-3.304E-05	-0.36672	-0.00024124	657.8360591809176	51.648	1.3719	51.648	51.322	52.694	0					79	26	5	0	0	0	0.082464	1	18283	18283		73.196	27.456	1	140540000	+		2612	22489	1697	1717	2554	2554					0.013260603786193315
ALENEVDQRLQ	11	Unmodified	_ALENEVDQRLQ_					0	0	0			REV__nc|ENSG00000204130|Q8WXA3-5|RUFY2	REV__nc|ENSG00000204130|Q8WXA3-5|RUFY2	MULTI-SECPEP	A375_MHC_IP_R1	1	658.2355346679688	2	657.836048	1313.65754	-0.31649	-0.0002082	-0.050225	-3.304E-05	-0.36672	-0.00024124	657.8360591809176	51.648	1.3719	51.648	51.322	52.694	0					79	26	5	0	0	0	0.87221	1	18509	18509		28.234	4.4438	1	140540000	+		2613	22489	1697	1717	2555	2555					0.013260603786193315
ALENEVDQRLQ	11	Unmodified	_ALENEVDQRLQ_					0	0	0			REV__nc|ENSG00000204130|Q8WXA3-5|RUFY2	REV__nc|ENSG00000204130|Q8WXA3-5|RUFY2	MULTI-MSMS	A375_MHC_IP_R2	2	658.235595703125	2	657.836048	1313.65754	-1.0283	-0.00067645	0.17228	0.00011333	-0.85601	-0.00056312	657.8362002913835	51.035	1.2678	51.789	51.462	52.73	0.75406					70	24	5	0	0	0	0.11652	2	19143	19143;19363		67.081	21.341	1	141790000	+		2614	22489	1697	1717	2556;2557	2556					0.013260603786193315
ALENEVDQRLQ	11	Unmodified	_ALENEVDQRLQ_					0	0	0			REV__nc|ENSG00000204130|Q8WXA3-5|RUFY2	REV__nc|ENSG00000204130|Q8WXA3-5|RUFY2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	657.836048	1313.65754	-1.0283	-0.00067645	0.17228	0.00011333	-0.85601	-0.00056312	657.8362002913835	51.035	1.2678	51.789	51.462	52.73	0.75406	0.070785	0.00020888	NaN	73.196	70	24	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141790000	+		2615	22489	1697	1717							0.013260603786193315
ALENSLELVT	10	Unmodified	_ALENSLELVT_					0	0	0			REV__TRPC3|p.A311V|1|0.16|ENSG00000138741|chr4:121932326-121932326|G/A|missense_variant	REV__TRPC3|p.A311V|1|0.16|ENSG00000138741|chr4:121932326-121932326|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	545.1948852539062	2	544.795329	1087.5761	-0.69529	-0.00037879	-1.4981	-0.00081618	-2.1934	-0.001195	544.7952448966863	65.725	0.60997	65.725	65.462	66.072	0					18	11	2	0	0	0	0.60238	1	23836	23836		39.95	3.8227	1	1597900	+		2616	28910	1698	1718	2558	2558					0.03581984686684336
ALENTEVPV	9	Unmodified	_ALENTEVPV_					0	0	0		ENSG00000189007|ENST00000237283|ADAT2	ENSG00000189007|ENST00000237283|ADAT2	ENSG00000189007|ENST00000237283|ADAT2	MULTI-MSMS	A375_MHC_IP_R1	1	486.65576171875	2	486.25584	970.497126	-0.23172	-0.00011268	0.0021941	1.0669E-06	-0.22953	-0.00011161	486.25571429468226	46.593	3.7505	46.593	44.928	48.679	0					179	73	3	0	0	0	0.17328	1	15845	15845		39.957	0.0076237	1	14500000			2617	8952	1699	1719	2559	2559					0.010697574523760522
ALENYPNFRSV	11	Unmodified	_ALENYPNFRSV_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.Y6402Ffs*2|1|0.34|ENSG00000183091|chr2:151492486-151492487|AT/-|frameshift_variant;NEB|p.V4554Gfs*42|1|0.12|ENSG00000183091|chr2:151562738-151562739|-/CC|frameshift_variant;NEB|p.L4555Rfs*43|1|0.12|ENSG00000183091|chr2:151562736-151562737|-/CCTGCTCT|frameshift_variant	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	A375_MHC_IP_R2	2	437.13958740234375	3	437.222693	1308.64625	-0.25784	-0.00011274	-0.31732	-0.00013874	-0.57517	-0.00025148	437.2223779051776	83.488	0.25564	84.228	83.998	84.254	0.73962					8	4	2	0	0	0	0.69231	1	31724	31724		9.2438	5.1271	1	744470			2618	8464	1700	1720	2560	2560					0.004272830751233414
ALEPKDKDL	9	Unmodified	_ALEPKDKDL_					0	0	0		nc|ENSG00000166963|P78559-2|MAP1A;ENSG00000166963|ENST00000300231|MAP1A;MAP1A|p.D1426N|1|0.23|ENSG00000166963|chr15:43525749-43525749|G/A|missense_variant	nc|ENSG00000166963|P78559-2|MAP1A	nc|ENSG00000166963|P78559-2|MAP1A	MSMS	A375_MHC_IP_R2	2	515.0183715820312	2	514.784764	1027.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.203	1	82.946	82.446	83.446	0.74293								0	0	0	0.15069	1	31225	31225		20.454	2.3073	1				2619	7142	1701	1721	2561	2561					0.04230019377791905
ALEQFQFI	8	Unmodified	_ALEQFQFI_					0	0	0		ENSG00000153936|ENST00000370550|HS2ST1	ENSG00000153936|ENST00000370550|HS2ST1	ENSG00000153936|ENST00000370550|HS2ST1	MULTI-SECPEP	A375_MHC_IP_R1	1	497.6475830078125	2	498.263468	994.512382	-0.18593	-9.2644E-05	-0.86877	-0.00043288	-1.0547	-0.00052552	498.2627892235034	93.048	0.56058	93.048	92.718	93.279	0					16	10	2	0	0	0	0.94479	1	34271	34271		13.508	13.508	1	1170000			2620	6050	1702	1722	2562	2562					0.014906690402312961
ALERALAGT	9	Unmodified	_ALERALAGT_					0	0	0			REV__nc|ENSG00000292339|O95671-3|ASMTL	REV__nc|ENSG00000292339|O95671-3|ASMTL	MULTI-MSMS	A375_MHC_IP_R1	1	451.6585388183594	2	451.258717	900.50288	-0.35127	-0.00015851	0.16249	7.3325E-05	-0.18878	-8.5188E-05	451.25874054858303	36.834	1.168	36.834	36.439	37.607	0					48	22	4	0	0	0	0.17328	2	12339	12339;12446		39.957	11.47	1	28897000	+		2621	20906	1703	1723	2563;2564	2563					0.0486490075469419
ALERALAGT	9	Unmodified	_ALERALAGT_					0	0	0			REV__nc|ENSG00000292339|O95671-3|ASMTL	REV__nc|ENSG00000292339|O95671-3|ASMTL	MULTI-MSMS	A375_MHC_IP_R1	1	451.6585388183594	2	451.258717	900.50288	-0.54604	-0.00024641	-0.0069791	-3.1494E-06	-0.55302	-0.00024956	451.25867311706503	41.444	0.9185	41.444	41.013	41.932	0					46	17	4	0	0	0	0.17328	1	14266	14266		39.957	9.3208	1	28544000	+		2622	20906	1703	1723	2565	2565					0.0486490075469419
ALERALAGT	9	Unmodified	_ALERALAGT_					0	0	0			REV__nc|ENSG00000292339|O95671-3|ASMTL	REV__nc|ENSG00000292339|O95671-3|ASMTL	MULTI-SECPEP	A375_MHC_IP_R1	1	451.1666564941406	2	451.258717	900.50288	-0.35127	-0.00015851	0.16249	7.3325E-05	-0.18878	-8.5188E-05	451.25874054858303	36.834	1.168	36.834	36.439	37.607	0					48	22	4	0	0	0	0.39388	1	12376	12376		39.957	13.074	1	28897000	+		2623	20906	1703	1723	2566	2566					0.0486490075469419
ALERALAGT	9	Unmodified	_ALERALAGT_					0	0	0			REV__nc|ENSG00000292339|O95671-3|ASMTL	REV__nc|ENSG00000292339|O95671-3|ASMTL	MULTI-MSMS	A375_MHC_IP_R2	2	451.65850830078125	2	451.258717	900.50288	-0.41943	-0.00018927	0.026927	1.2151E-05	-0.3925	-0.00017712	451.25869586320476	35.952	1.1214	36.716	36.384	37.505	0.76338					43	21	3	0	0	0	0.27715	1	13046	13046		32.305	3.8186	1	30270000	+		2624	20906	1703	1723	2567	2567					0.0486490075469419
ALERALAGT	9	Unmodified	_ALERALAGT_					0	0	0			REV__nc|ENSG00000292339|O95671-3|ASMTL	REV__nc|ENSG00000292339|O95671-3|ASMTL	MULTI-MSMS	A375_MHC_IP_R2	2	451.65838623046875	2	451.258717	900.50288	-0.40396	-0.00018229	0.15483	6.9868E-05	-0.24913	-0.00011242	451.25873443504213	40.632	0.81362	41.407	40.98	41.794	0.77451					36	15	3	0	0	0	0.12592	1	14997	14997		46.021	16.939	1	21300000	+		2625	20906	1703	1723	2568	2568					0.0486490075469419
ALERALAGT	9	Unmodified	_ALERALAGT_					0	0	0			REV__nc|ENSG00000292339|O95671-3|ASMTL	REV__nc|ENSG00000292339|O95671-3|ASMTL	MULTI-MSMS	A375_MHC_IP_R2	2	451.65826416015625	2	451.258717	900.50288	-0.37488	-0.00016917	-0.2664	-0.00012021	-0.64128	-0.00028938	451.2585079387381	55.612	0.71301	56.362	56.135	56.848	0.75075					22	13	2	0	0	0	0.10622	1	21035	21035		49.554	0	1	2844400	+		2626	20906	1703	1723	2569	2569					0.0486490075469419
ALERALAGT	9	Unmodified	_ALERALAGT_					0	0	0			REV__nc|ENSG00000292339|O95671-3|ASMTL	REV__nc|ENSG00000292339|O95671-3|ASMTL	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	451.258717	900.50288	-0.54604	-0.00024641	-0.0069791	-3.1494E-06	-0.55302	-0.00024956	451.25867311706503	41.444	0.9185	41.444	41.013	41.932	0	0.018635	-6.8306E-05	NaN	46.021	46	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28544000	+		2627	20906	1703	1723							0.0486490075469419
ALERALAGT	9	Unmodified	_ALERALAGT_					0	0	0			REV__nc|ENSG00000292339|O95671-3|ASMTL	REV__nc|ENSG00000292339|O95671-3|ASMTL	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	451.258717	900.50288	-0.37488	-0.00016917	-0.2664	-0.00012021	-0.64128	-0.00028938	451.2585079387381	55.612	0.71301	56.362	56.135	56.848	0.75075	-0.17797	-0.00022975	NaN	49.554	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2844400	+		2628	20906	1703	1723							0.0486490075469419
ALERALAGT	9	Unmodified	_ALERALAGT_					0	0	0			REV__nc|ENSG00000292339|O95671-3|ASMTL	REV__nc|ENSG00000292339|O95671-3|ASMTL	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	451.258717	900.50288	-0.40396	-0.00018229	0.15483	6.9868E-05	-0.24913	-0.00011242	451.25873443504213	40.632	0.81362	41.407	40.98	41.794	0.77451	-0.018635	7.7729E-05	NaN	46.021	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21300000	+		2629	20906	1703	1723							0.0486490075469419
ALERELALL	9	Unmodified	_ALERELALL_					0	0	0			REV__ENSG00000185215|ENST00000560869|TNFAIP2	REV__ENSG00000185215|ENST00000560869|TNFAIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	514.710205078125	2	514.310949	1026.60735	-0.65662	-0.0003377	-1.2036	-0.00061903	-1.8602	-0.00095673	514.310796398108	90.703	0.81093	91.438	91.007	91.818	0.7345					34	15	3	0	0	0	0.11711	1	34493	34493		43.772	0	1	8191800	+		2630	21877	1704	1724	2570	2570					0.09510602511409161
ALESEEHSL	9	Unmodified	_ALESEEHSL_					0	0	0			REV__ENSG00000115816|ENST00000234170|CEBPZ	REV__ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MSMS	A375_MHC_IP_R2	2	508.2181396484375	2	507.740554	1013.46655	-1.1527	-0.00058527	0.62284	0.00031624	-0.52986	-0.00026903	507.74088829540955	53.791	1.5291	54.542	53.893	55.422	0.75105					53	29	2	0	0	0	0.68216	1	20128	20128		8.5933	0.68312	1	1908300	+		2631	17914	1705	1725	2571	2571					-0.0396402093266488
ALESFLKQV	9	Unmodified	_ALESFLKQV_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.L313F|1|0.54|ENSG00000253729|chr8:47943238-47943238|G/A|missense_variant	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	A375_MHC_IP_R1	1	517.66845703125	2	517.797675	1033.5808	-0.58833	-0.00030464	0.081406	4.2152E-05	-0.50693	-0.00026249	517.7976503871427	83.615	0.60848	83.615	83.329	83.937	0					24	11	3	0	0	0	0.018261	1	30533	30533		85.642	33.373	1	7207500			2632	9866	1706	1726	2572	2572					0.06534913620112093
ALESFLKQV	9	Unmodified	_ALESFLKQV_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.L313F|1|0.54|ENSG00000253729|chr8:47943238-47943238|G/A|missense_variant	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1978149414062	2	517.797675	1033.5808	-0.7326	-0.00037934	-0.086607	-4.4845E-05	-0.8192	-0.00042418	517.7976433702349	82.728	0.60559	83.471	83.195	83.8	0.74294					25	11	3	0	0	0	5.1125E-05	1	31410	31410		199.75	76.299	1	6538600			2633	9866	1706	1726	2573	2573					0.06534913620112093
ALESKKLNY	9	Unmodified	_ALESKKLNY_					0	0	0			REV__tr|U7ST00|U7ST00_FUSNUNagDproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01658PE=3SV=1	REV__tr|U7ST00|U7ST00_FUSNUNagDproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01658PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	533.1846923828125	2	533.300581	1064.58661	-0.48764	-0.00026006	-0.35809	-0.00019097	-0.84573	-0.00045103	533.3002867510817	99.837	0.40501	100.6	100.37	100.78	0.76278					13	7	2	0	0	0	0.69381	1	37896	37896		15.847	0	1	1534100	+		2634	28454	1707	1727	2574	2574					0.05690012131753974
ALEVLLPRC	9	Unmodified	_ALEVLLPRC_					0	0	0			REV__ENST00000370793.5_1_1:78211275-78225441:-|nuORF	REV__ENST00000370793.5_1_1:78211275-78225441:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.241943359375	2	507.294245	1012.57394	-0.28943	-0.00014683	-2.9609	-0.001502	-3.2503	-0.0016489	507.29244481034425	89.044	0.40656	89.044	88.764	89.171	0					10	7	2	0	0	0	0.3607	1	32650	32650		26.884	6.43	1	1357200	+		2635	24038	1708	1728	2575	2575					0.06815277467876513
ALFDAQAQV	9	Unmodified	_ALFDAQAQV_					0	0	0		ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	MULTI-MSMS	A375_MHC_IP_R1	1	482.1505432128906	2	481.750724	961.486896	-0.21282	-0.00010253	-0.40928	-0.00019717	-0.6221	-0.0002997	481.75054652274804	82.109	0.76167	82.109	81.809	82.571	0					43	14	4	0	0	0	0.015701	1	30012	30012		88.954	28.88	1	5637400			2636	2599	1709	1729	2576	2576					0.0046119451779986775
ALFDAQAQV	9	Unmodified	_ALFDAQAQV_					0	0	0		ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	MULTI-MSMS	A375_MHC_IP_R2	2	482.1503601074219	2	481.750724	961.486896	-0.66133	-0.00031859	0.13461	6.4847E-05	-0.52672	-0.00025375	481.75080480187194	81.422	0.60531	82.165	81.826	82.431	0.74293					21	11	2	0	0	0	0.015701	1	30897	30897		88.954	19.849	1	4890400			2637	2599	1709	1729	2577	2577					0.0046119451779986775
ALFDGDPHL	9	Unmodified	_ALFDGDPHL_					0	0	0		PRUNE2|p.I2429Mfs*8|1|0.09|ENSG00000106772|chr9:76704987-76704988|-/C|frameshift_variant;nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	PRUNE2|p.I2429Mfs*8|1|0.09|ENSG00000106772|chr9:76704987-76704988|-/C|frameshift_variant	PRUNE2|p.I2429Mfs*8|1|0.09|ENSG00000106772|chr9:76704987-76704988|-/C|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	493.1427307128906	2	492.742899	983.471246	-0.20416	-0.0001006	0.68499	0.00033752	0.48083	0.00023693	492.74288240841855	79.128	0.81179	79.128	78.606	79.418	0					34	15	4	0	0	0	0.3054	2	28877	28838;28877		30.225	12.078	1	2830300			2638	2711	1710	1730	2578;2579	2579					-0.02115091999235119
ALFDGDPHL	9	Unmodified	_ALFDGDPHL_					0	0	0		PRUNE2|p.I2429Mfs*8|1|0.09|ENSG00000106772|chr9:76704987-76704988|-/C|frameshift_variant;nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	PRUNE2|p.I2429Mfs*8|1|0.09|ENSG00000106772|chr9:76704987-76704988|-/C|frameshift_variant	PRUNE2|p.I2429Mfs*8|1|0.09|ENSG00000106772|chr9:76704987-76704988|-/C|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	493.1422119140625	2	492.742899	983.471246	-0.46986	-0.00023152	0.98213	0.00048394	0.51227	0.00025242	492.7428869709226	78.365	0.81158	79.11	78.677	79.489	0.74474					36	15	4	0	0	0	0.1978	2	29770	29770;29817		38.151	21.209	1	2392600			2639	2711	1710	1730	2580;2581	2580					-0.02115091999235119
ALFEEQGIGV	10	Unmodified	_ALFEEQGIGV_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1;ENST00000494467.1_1_9:107587931-107593243:-|nuORF	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	A375_MHC_IP_R1	1	532.176513671875	2	531.776939	1061.53933	-0.57573	-0.00030616	0.33514	0.00017822	-0.2406	-0.00012794	531.7768803979081	103.24	0.8146	103.24	102.96	103.78	0					30	15	3	0	0	0	0.088367	1	37933	37933		75.761	35.312	1	4164300			2640	6906	1711	1731	2582	2582					0.011017328607749732
ALFEEVPEL	9	Unmodified	_ALFEEVPEL_					0	0	0		nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF	nc|ENSG00000138363|P31939-2|ATIC	nc|ENSG00000138363|P31939-2|ATIC	MSMS	A375_MHC_IP_R1	1	523.7054443359375	2	523.773865	1045.53318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.7	1	125.7	125.2	126.2	0								0	0	0	0.033426	1	47896	47896		64.236	15.89	1				2641	4983	1712	1732	2583	2583					0.012232146292262769
ALFEGKVQL	9	Unmodified	_ALFEGKVQL_					0	0	0		ENSG00000157796|ENST00000399820|WDR19;ENST00000512095.5_1_4:39217537-39276579:+|nuORF;nc|ENSG00000157796|Q8NEZ3-2|WDR19	ENSG00000157796|ENST00000399820|WDR19	ENSG00000157796|ENST00000399820|WDR19	MULTI-SECPEP	A375_MHC_IP_R1	1	502.1900939941406	2	502.792392	1003.57023	-0.27158	-0.00013655	-0.28168	-0.00014163	-0.55326	-0.00027818	502.79223223738757	78.125	1.6759	78.125	77.742	79.418	0					74	32	3	0	0	0	0.0085579	1	28515	28515		149.91	61.01	1	145890000			2642	6266	1713	1733	2584	2584					0.06858930965665877
ALFEGKVQL	9	Unmodified	_ALFEGKVQL_					0	0	0		ENSG00000157796|ENST00000399820|WDR19;ENST00000512095.5_1_4:39217537-39276579:+|nuORF;nc|ENSG00000157796|Q8NEZ3-2|WDR19	ENSG00000157796|ENST00000399820|WDR19	ENSG00000157796|ENST00000399820|WDR19	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1920166015625	2	502.792392	1003.57023	-0.64341	-0.0003235	-0.18376	-9.2395E-05	-0.82717	-0.0004159	502.7922920290762	77.156	1.8306	77.899	77.404	79.234	0.74294					72	35	3	0	0	0	0.011066	1	29238	29238		137.42	54.895	1	116730000			2643	6266	1713	1733	2585	2585					0.06858930965665877
ALFFIFVYFFN	11	Unmodified	_ALFFIFVYFFN_					0	0	0			REV__ENST00000310137.4_1_11:66394295-66394520:+|nuORF	REV__ENST00000310137.4_1_11:66394295-66394520:+|nuORF	MSMS	A375_MHC_IP_R2	2	476.48492431640625	3	476.584792	1426.73255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.986	1	79.73	79.23	80.23	0.74474								0	0	0	0.16331	1	29974	29974		0.50596	0	1		+		2644	23496	1714	1734	2586	2586					0.03624894647805377
ALFFQLVDV	9	Unmodified	_ALFFQLVDV_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-SECPEP	A375_MHC_IP_R2	2	526.6942749023438	2	526.294768	1050.57498	-0.36865	-0.00019402	-0.66317	-0.00034902	-1.0318	-0.00054304	526.2941873341425	133.92	0.40665	134.08	133.75	134.16	0.16487					13	7	3	0	0	0	0.053904	1	52692	52692		85.272	54.635	1	13135000			2645	3557	1715	1735	2587	2587					0.051718151084287456
ALFGDVKFV	9	Unmodified	_ALFGDVKFV_					0	0	0		ENSG00000183696|ENST00000395564|UPP1	ENSG00000183696|ENST00000395564|UPP1	ENSG00000183696|ENST00000395564|UPP1	MULTI-MSMS	A375_MHC_IP_R2	2	498.6815185546875	2	498.28166	994.548768	-0.5066	-0.00025243	0.010736	5.3498E-06	-0.49586	-0.00024708	498.28154784689065	103.06	0.40842	103.82	103.53	103.94	0.76428					14	7	2	0	0	0	0.12771	1	39025	39025		45.7	1.8413	1	1467700			2646	8521	1716	1736	2588	2588					0.051275459369549026
ALFGKTDVV	9	Unmodified	_ALFGKTDVV_					0	0	0		nc|ENSG00000064999|Q92625-2|ANKS1A;ENSG00000064999|ENST00000360359|ANKS1A	nc|ENSG00000064999|Q92625-2|ANKS1A	nc|ENSG00000064999|Q92625-2|ANKS1A	MULTI-MSMS	A375_MHC_IP_R1	1	475.6713562011719	2	475.271293	948.528032	-0.52092	-0.00024758	0.40429	0.00019215	-0.11663	-5.5429E-05	475.2713005128099	64.043	0.55733	64.043	63.735	64.292	0					18	10	3	0	0	0	0.12771	1	23195	23195		45.7	15.063	1	2582100			2647	1365	1717	1737	2589	2589					0.05170955557275647
ALFKGLEKA	9	Unmodified	_ALFKGLEKA_					0	0	0		ENSG00000175294|ENST00000312106|CATSPER1	ENSG00000175294|ENST00000312106|CATSPER1	ENSG00000175294|ENST00000312106|CATSPER1	MULTI-MSMS	A375_MHC_IP_R1	1	489.19488525390625	2	488.794935	975.575317	-0.64195	-0.00031378	0.13121	6.4136E-05	-0.51073	-0.00024964	488.7949321800246	41.394	0.55984	41.394	41.114	41.674	0					28	10	4	0	0	0	0.0094735	1	14251	14251		107.1	18.146	1	16393000			2648	7948	1718	1738	2590	2590					0.0865523482827939
ALFKGLEKA	9	Unmodified	_ALFKGLEKA_					0	0	0		ENSG00000175294|ENST00000312106|CATSPER1	ENSG00000175294|ENST00000312106|CATSPER1	ENSG00000175294|ENST00000312106|CATSPER1	MULTI-MSMS	A375_MHC_IP_R2	2	489.1944580078125	2	488.794935	975.575317	-0.63447	-0.00031013	0.29782	0.00014557	-0.33666	-0.00016456	488.7949619773006	40.384	0.50642	41.158	40.879	41.386	0.77451					25	9	4	0	0	0	0.0095341	1	14938	14938		96.936	18.207	1	14893000			2649	7948	1718	1738	2591	2591					0.0865523482827939
ALFLRLRNV	9	Unmodified	_ALFLRLRNV_					0	0	0		ENST00000581489.1_1_17:80250576-80250666:-|nuORF	ENST00000581489.1_1_17:80250576-80250666:-|nuORF	ENST00000581489.1_1_17:80250576-80250666:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	551.2081909179688	2	551.3482	1100.68185	-0.80222	-0.0004423	2.4129	0.0013304	1.6107	0.00088807	551.8529388256147	72.973	0.25482	73.709	73.53	73.785	0.73541					5	4	2	0	0	0	0.78351	1	27701	27701		13.508	6.2187	1	530400			2650	13683	1719	1739	2592	2592					0.13553410113445352
ALFLWPYGL	9	Unmodified	_ALFLWPYGL_					0	0	0			REV__ENSG00000154252|ENST00000192314|GAL3ST2	REV__ENSG00000154252|ENST00000192314|GAL3ST2	MULTI-SECPEP	A375_MHC_IP_R1	1	539.6297607421875	2	540.299853	1078.58515	-0.71585	-0.00038677	-2.8414	-0.0015352	-3.5573	-0.001922	540.8001285050794	76.548	0.25188	76.548	76.421	76.673	0					5	4	2	0	0	0	0.64653	1	27946	27946		14.582	8.8498	1	605330	+		2651	19873	1720	1740	2593	2593					0.04900422833657103
ALFNGAQKL	9	Unmodified	_ALFNGAQKL_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-SECPEP	A375_MHC_IP_R1	1	481.6769104003906	2	481.276909	960.539266	-0.31049	-0.00014943	-0.010211	-4.9142E-06	-0.3207	-0.00015435	481.2768366604784	55.847	0.7621	55.847	55.482	56.244	0					37	14	4	0	0	0	0.010819	1	19950	19950		147.83	94.256	1	17424000			2652	1290;12706	1721	1741	2594	2594					0.05741777651417124
ALFNGAQKL	9	Unmodified	_ALFNGAQKL_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	A375_MHC_IP_R2	2	482.32073974609375	2	481.276909	960.539266	-0.72467	-0.00034877	0.23856	0.00011481	-0.48611	-0.00023395	481.2769664985733	54.851	0.61337	55.602	55.37	55.984	0.75075					31	11	4	0	0	0	0.098973	1	20776	20776		50.855	20.63	1	19189000			2653	1290;12706	1721	1741	2595	2595					0.05741777651417124
ALFNIRASFS	10	Unmodified	_ALFNIRASFS_					0	0	0			REV__LRRK2|p.M1162I|1|0.25|ENSG00000188906|chr12:40299247-40299247|G/A|missense_variant	REV__LRRK2|p.M1162I|1|0.25|ENSG00000188906|chr12:40299247-40299247|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	375.2574768066406	3	375.873224	1124.59784	0.346	0.00013005	0.34111	0.00012821	0.68711	0.00025827	375.87305407672636	46.116	0.40361	46.881	46.704	47.108	0.76519					12	7	2	0	0	0	0.63381	1	17291	17291		21.799	1.8126	1	1198600	+		2654	26959	1722	1742	2596	2596					0.0405283422589946
ALFNKGGSVFL	11	Unmodified	_ALFNKGGSVFL_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.N3444Tfs*24|1|0.36|ENSG00000164199|chr5:90728837-90728837|A/-|frameshift_variant;ENST00000509621.1_3_5:89989878-90055411:+|nuORF	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	A375_MHC_IP_R1	1	577.2238159179688	2	576.824224	1151.63389	-0.27624	-0.00015934	0.043595	2.5147E-05	-0.23264	-0.00013419	576.824151027094	94.369	0.50916	94.369	94.09	94.599	0					17	9	3	0	0	0	0.039874	1	34672	34672		100.09	30.986	1	2294100			2655	6801	1723	1743	2597	2597					0.06414291402757044
ALFNKGGSVFL	11	Unmodified	_ALFNKGGSVFL_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.N3444Tfs*24|1|0.36|ENSG00000164199|chr5:90728837-90728837|A/-|frameshift_variant;ENST00000509621.1_3_5:89989878-90055411:+|nuORF	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	A375_MHC_IP_R2	2	577.2242431640625	2	576.824224	1151.63389	-0.050327	-2.903E-05	-0.18421	-0.00010626	-0.23454	-0.00013529	576.8242811747895	93.32	0.50955	94.059	93.797	94.306	0.73901					17	9	2	0	0	0	0.1966	1	35518	35518		63.227	26.721	1	1617900			2656	6801	1723	1743	2598	2598					0.06414291402757044
ALFPAPLAQI	10	Unmodified	_ALFPAPLAQI_					0	0	0		ENSG00000167257|ENST00000300650|RNF214;nc|ENSG00000167257|Q8ND24-2|RNF214;ENST00000534709.1_1_11:117152603-117155864:+|nuORF	ENSG00000167257|ENST00000300650|RNF214	ENSG00000167257|ENST00000300650|RNF214	MULTI-SECPEP	A375_MHC_IP_R2	2	521.210205078125	2	520.810585	1039.60662	-0.66232	-0.00034494	0.33785	0.00017596	-0.32447	-0.00016899	520.8104187941508	129.75	0.45322	129.96	129.69	130.15	0.2142					19	8	3	0	0	0	0.037391	1	50996	50996		131.3	89.203	1	14556000			2657	7172	1724	1744	2599	2599					0.08839807862364069
ALFPELPKSA	10	Unmodified	_ALFPELPKSA_					0	0	0		ENSG00000198824|ENST00000361283|CHAMP1	ENSG00000198824|ENST00000361283|CHAMP1	ENSG00000198824|ENST00000361283|CHAMP1	MULTI-SECPEP	A375_MHC_IP_R1	1	537.2053833007812	2	536.8055	1071.59645	-0.61713	-0.00033128	0.043208	2.3194E-05	-0.57392	-0.00030809	536.8055096281464	82.827	0.75859	82.827	82.622	83.38	0					19	14	2	0	0	0	0.68963	1	30325	30325		28.495	28.495	1	2153600			2658	9336	1725	1745	2600	2600					0.06351200137146407
ALFPELPKSA	10	Unmodified	_ALFPELPKSA_					0	0	0		ENSG00000198824|ENST00000361283|CHAMP1	ENSG00000198824|ENST00000361283|CHAMP1	ENSG00000198824|ENST00000361283|CHAMP1	MULTI-SECPEP	A375_MHC_IP_R2	2	537.2048950195312	2	536.8055	1071.59645	-0.92185	-0.00049485	-0.21648	-0.00011621	-1.1383	-0.00061106	536.8053221968441	82.07	0.71254	82.813	82.533	83.246	0.74293					23	13	2	0	0	0	0.58856	1	31165	31165		41.956	12.874	1	4004000			2659	9336	1725	1745	2601	2601					0.06351200137146407
ALFPERITV	9	Unmodified	_ALFPERITV_					0	0	0		nc|ENSG00000137343|Q5SQI0-7|ATAT1;nc|ENSG00000137343|Q5SQI0-6|ATAT1;nc|ENSG00000137343|Q5SQI0-5|ATAT1;nc|ENSG00000137343|Q5SQI0-4|ATAT1;nc|ENSG00000137343|Q5SQI0-3|ATAT1;nc|ENSG00000137343|Q5SQI0|ATAT1	nc|ENSG00000137343|Q5SQI0-7|ATAT1	nc|ENSG00000137343|Q5SQI0-7|ATAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	523.7051391601562	2	523.305667	1044.59678	-0.42644	-0.00022316	0.069183	3.6204E-05	-0.35726	-0.00018696	523.305637047914	88.231	1.8331	88.231	87.542	89.375	0					63	35	3	0	0	0	0.11849	1	32348	32348		61.602	14.008	1	73473000			2660	14627	1726	1746	2602	2602					0.07626619856978323
ALFPERITV	9	Unmodified	_ALFPERITV_					0	0	0		nc|ENSG00000137343|Q5SQI0-7|ATAT1;nc|ENSG00000137343|Q5SQI0-6|ATAT1;nc|ENSG00000137343|Q5SQI0-5|ATAT1;nc|ENSG00000137343|Q5SQI0-4|ATAT1;nc|ENSG00000137343|Q5SQI0-3|ATAT1;nc|ENSG00000137343|Q5SQI0|ATAT1	nc|ENSG00000137343|Q5SQI0-7|ATAT1	nc|ENSG00000137343|Q5SQI0-7|ATAT1	MULTI-MSMS	A375_MHC_IP_R2	2	523.7051391601562	2	523.305667	1044.59678	-0.45219	-0.00023663	-0.24741	-0.00012947	-0.6996	-0.0003661	523.3054720036838	87.361	2.0781	88.094	87.151	89.229	0.73294					102	40	4	0	0	0	0.024574	1	33204	33204		79.596	19.522	1	72833000			2661	14627	1726	1746	2603	2603					0.07626619856978323
ALFPGDVDRL	10	Unmodified	_ALFPGDVDRL_					0	0	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R1	1	553.236572265625	2	551.798206	1101.58186	-0.48012	-0.00026493	0.051962	2.8673E-05	-0.42815	-0.00023625	551.798224515549	88.23	1.5763	88.23	87.747	89.323	0					103	29	6	0	0	0	0.30332	1	32389	32389		45.74	24.203	1	152960000			2662	2241	1727	1747	2604	2604					0.03513127989003806
ALFPGDVDRL	10	Unmodified	_ALFPGDVDRL_					0	0	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R2	2	553.2362060546875	2	551.798206	1101.58186	-0.68645	-0.00037878	0.041775	2.3051E-05	-0.64468	-0.00035573	551.7982102573468	87.51	2.0246	88.241	87.61	89.635	0.7318					118	39	6	0	0	0	0.56082	1	33188	33188		21.537	3.3906	1	153010000			2663	2241	1727	1747	2605	2605					0.03513127989003806
ALFPGEELKHA	11	Unmodified	_ALFPGEELKHA_					0	0	0		nc|ENSG00000102554|Q13887-3|KLF5;nc|ENSG00000102554|Q13887-2|KLF5;ENSG00000102554|ENST00000377687|KLF5	nc|ENSG00000102554|Q13887-3|KLF5	nc|ENSG00000102554|Q13887-3|KLF5	MULTI-MSMS	A375_MHC_IP_R1	1	404.9521789550781	3	404.552151	1210.63462	-0.42067	-0.00017018	0.8792	0.00035568	0.45853	0.0001855	404.552464973653	50.891	0.70929	50.891	50.561	51.27	0					29	13	4	0	0	0	0.36066	1	18013	18013		42.068	22.081	1	6718300			2664	2382	1728	1748	2606	2606					0.03773086051796781
ALFPGEELKHA	11	Unmodified	_ALFPGEELKHA_					0	0	0		nc|ENSG00000102554|Q13887-3|KLF5;nc|ENSG00000102554|Q13887-2|KLF5;ENSG00000102554|ENST00000377687|KLF5	nc|ENSG00000102554|Q13887-3|KLF5	nc|ENSG00000102554|Q13887-3|KLF5	MULTI-MSMS	A375_MHC_IP_R2	2	404.9517517089844	3	404.552151	1210.63462	-0.20775	-8.4048E-05	0.021378	8.6485E-06	-0.18638	-7.5399E-05	404.5520834900588	50.006	0.86525	50.76	50.445	51.311	0.75406					35	16	3	0	0	0	0.36066	1	18782	18782		42.068	27.111	1	4408600			2665	2382	1728	1748	2607	2607					0.03773086051796781
ALFPGVALL	9	Unmodified	_ALFPGVALL_					0	0	0		ENST00000469684.1_1_15:44038662-44048907:+|nuORF;ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3	ENST00000469684.1_1_15:44038662-44048907:+|nuORF	ENST00000469684.1_1_15:44038662-44048907:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	451.18109130859375	2	450.781296	899.54804	-0.41216	-0.0001858	0.57821	0.00026064	0.16604	7.4849E-05	450.781494044073	133.07	0.46045	133.07	132.89	133.36	0					18	8	3	0	0	0	0.14801	1	51319	51319		56.048	10.298	1	61907000			2666	7148	1729	1749	2608	2608					0.09424751287883737
ALFPGVALL	9	Unmodified	_ALFPGVALL_					0	0	0		ENST00000469684.1_1_15:44038662-44048907:+|nuORF;ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3	ENST00000469684.1_1_15:44038662-44048907:+|nuORF	ENST00000469684.1_1_15:44038662-44048907:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	451.18084716796875	2	450.781296	899.54804	-0.22352	-0.00010076	-0.070123	-3.161E-05	-0.29364	-0.00013237	450.7812073595888	132.85	0.4576	133.02	132.89	133.35	0.16487					21	8	4	0	0	0	0.0515	1	52273	52273		79.935	16.541	1	57103000			2667	7148	1729	1749	2609	2609					0.09424751287883737
ALFPHLLQPV	10	Unmodified	_ALFPHLLQPV_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	A375_MHC_IP_R1	1	567.9913330078125	2	567.837134	1133.65972	-0.17363	-9.8595E-05	-0.29163	-0.0001656	-0.46527	-0.0002642	567.8369539213519	111.46	0.45924	111.46	111.21	111.67	0					12	8	2	0	0	0	0.71364	1	40807	40807		10.824	6.0679	1	2811200			2668	3884	1730	1750	2610	2610					0.09823185645018384
ALFPHLLQPV	10	Unmodified	_ALFPHLLQPV_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-SECPEP	A375_MHC_IP_R2	2	568.2371215820312	2	567.837134	1133.65972	-0.2031	-0.00011533	-0.86315	-0.00049013	-1.0663	-0.00060546	567.8370595957375	110.51	0.46072	111.24	110.94	111.4	0.73692					19	8	3	0	0	0	0.57563	1	41705	41705		39.957	24.11	1	1655900			2669	3884	1730	1750	2611	2611					0.09823185645018384
ALFPHLLQPV	10	Unmodified	_ALFPHLLQPV_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	567.837134	1133.65972	-0.17363	-9.8595E-05	-0.29163	-0.0001656	-0.46527	-0.0002642	567.8369539213519	111.46	0.45924	111.46	111.21	111.67	0	0.10634	0.00019083	NaN	39.957	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2811200			2670	3884	1730	1750							0.09823185645018384
ALFQKRRF	8	Unmodified	_ALFQKRRF_					0	0	0		nc|ENSG00000214300|A6NKU9-2|SPDYE3;ENSG00000214300|ENST00000332397|SPDYE3	nc|ENSG00000214300|A6NKU9-2|SPDYE3	nc|ENSG00000214300|A6NKU9-2|SPDYE3	MULTI-SECPEP	A375_MHC_IP_R1	1	533.718994140625	2	533.319443	1064.62433	-0.81653	-0.00043547	-0.92828	-0.00049507	-1.7448	-0.00093054	533.3189624435428	46.914	0.40781	46.914	46.647	47.055	0					12	7	2	0	0	0	0.972	1	16517	16517		10.183	10.183	1	2089600			2671	9613	1731	1751	2612	2612					0.09460567907876793
ALFQQNNLV	9	Unmodified	_ALFQQNNLV_					0	0	0			REV__ENSG00000173599|ENST00000393960|PC	REV__ENSG00000173599|ENST00000393960|PC	MULTI-SECPEP	A375_MHC_IP_R2	2	524.1851196289062	2	523.785099	1045.55564	-0.46127	-0.00024161	0.82439	0.0004318	0.36312	0.00019019	523.7852136059371	92.84	0.45546	93.579	93.341	93.797	0.73902					17	8	3	0	0	0	0.67221	1	35326	35326		13.508	13.508	1	2021100	+		2672	21235	1732	1752	2613	2613					0.03468858817495857
ALFQRPPLI	9	Unmodified	_ALFQRPPLI_					0	0	0		ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1	ENSG00000130826|ENST00000369550|DKC1	ENSG00000130826|ENST00000369550|DKC1	MULTI-SECPEP	A375_MHC_IP_R1	1	528.223876953125	2	527.824027	1053.6335	-0.57069	-0.00030122	-0.12245	-6.4633E-05	-0.69314	-0.00036586	527.8238997098414	94.07	1.0141	94.07	93.738	94.752	0					51	19	4	0	0	0	0.036758	1	34526	34526		100.37	70.147	1	35966000			2673	4287	1733	1753	2614	2614					0.10882916473565274
ALFQRPPLI	9	Unmodified	_ALFQRPPLI_					0	0	0		ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1	ENSG00000130826|ENST00000369550|DKC1	ENSG00000130826|ENST00000369550|DKC1	MULTI-SECPEP	A375_MHC_IP_R2	2	528.2237548828125	2	527.824027	1053.6335	-0.41515	-0.00021913	0.35194	0.00018576	-0.063212	-3.3365E-05	527.8241264477352	93.135	1.1172	93.874	93.443	94.56	0.73902					58	21	4	0	0	0	0.011405	1	35339	35339		112.59	82.368	1	29370000			2674	4287	1733	1753	2615	2615					0.10882916473565274
ALFRDFSL	8	Unmodified	_ALFRDFSL_					0	0	0			REV__OR51A4|p.M120L|1|0.2|ENSG00000205497|chr11:4946743-4946743|T/A|missense_variant	REV__OR51A4|p.M120L|1|0.2|ENSG00000205497|chr11:4946743-4946743|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	485.3118896484375	2	484.763635	967.512717	-0.60531	-0.00029343	0.18379	8.9093E-05	-0.42152	-0.00020434	484.76370691286604	70.717	0.3539	71.451	71.149	71.503	0.73421					10	6	2	0	0	0	0.75322	1	26732	26732		19.439	4.8573	1	1124300	+		2675	27675	1734	1754	2616	2616					0.027660887600859496
ALFRGVSPILS	11	Unmodified	_ALFRGVSPILS_					0	0	0			REV__ENST00000506213.1_1_5:43490704-43493698:-|nuORF	REV__ENST00000506213.1_1_5:43490704-43493698:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	387.4452209472656	3	387.232641	1158.67609	-0.056673	-2.1946E-05	0.21417	8.2934E-05	0.1575	6.0988E-05	387.567059600498	36.695	0.35325	36.695	36.592	36.945	0					10	6	2	0	0	0	0.99681	1	12316	12316		4.4062	0	1	1623100	+		2676	21131	1735	1755	2617	2617					0.10310266811166002
ALFRLSYETF	10	Unmodified	_ALFRLSYETF_					0	0	0			REV__ENSG00000187323|ENST00000442544|DCC	REV__ENSG00000187323|ENST00000442544|DCC	MULTI-SECPEP	A375_MHC_IP_R2	2	415.9112548828125	3	416.220401	1245.63937	-0.048954	-2.0376E-05	-2.6131	-0.0010876	-2.662	-0.001108	416.21872986422625	30.693	0.65587	31.411	31.013	31.669	0.71857					29	12	4	0	0	0	0.94269	1	10660	10660		1.5923	0.72791	1	3683300	+		2677	22020	1736	1756	2618	2618					0.02637970194564332
ALFSAVPYL	9	Unmodified	_ALFSAVPYL_					0	0	0			REV__nc|ENSG00000064270|O75185-2|ATP2C2	REV__nc|ENSG00000064270|O75185-2|ATP2C2	MSMS	A375_MHC_IP_R2	2	490.7181091308594	2	490.776211	979.537869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.897	1	89.629	89.129	90.129	0.7318								0	0	0	0.11276	1	33833	33833		38.151	2.107	1		+		2678	27110	1737	1757	2619	2619					0.04728143562670084
ALFSGDALSV	10	Unmodified	_ALFSGDALSV_					0	0	0		ENSG00000103253|ENST00000389703|HAGHL;nc|ENSG00000103253|Q6PII5|HAGHL	ENSG00000103253|ENST00000389703|HAGHL	ENSG00000103253|ENST00000389703|HAGHL	MULTI-MSMS	A375_MHC_IP_R1	1	490.658203125	2	490.258382	978.502212	-0.26314	-0.000129	0.066831	3.2765E-05	-0.1963	-9.624E-05	490.2583876434275	103.14	0.6613	103.14	102.81	103.47	0					30	12	3	0	0	0	0.0042327	1	37838	37838		100.37	0.57254	1	7782800			2679	2436	1738	1758	2620	2620					0.012100613149982564
ALFSGDALSV	10	Unmodified	_ALFSGDALSV_					0	0	0		ENSG00000103253|ENST00000389703|HAGHL;nc|ENSG00000103253|Q6PII5|HAGHL	ENSG00000103253|ENST00000389703|HAGHL	ENSG00000103253|ENST00000389703|HAGHL	MULTI-MSMS	A375_MHC_IP_R2	2	490.6583251953125	2	490.258382	978.502212	-0.53933	-0.00026441	0.24167	0.00011848	-0.29766	-0.00014593	490.25843512493833	102.34	0.81237	103.1	102.77	103.58	0.76428					35	15	3	0	0	0	0.011733	1	38729	38729		112.59	1.3062	1	9009500			2680	2436	1738	1758	2621	2621					0.012100613149982564
ALFTFFRSRSL	11	Unmodified	_ALFTFFRSRSL_					0	0	0			REV__nc|ENSG00000290691|A6NGW2|STRCP1	REV__nc|ENSG00000290691|A6NGW2|STRCP1	MULTI-MSMS	A375_MHC_IP_R1	1	673.2742309570312	2	672.874779	1343.73501	-0.60951	-0.00041013	0.20293	0.00013655	-0.40658	-0.00027358	672.8748516403529	104.24	0.76369	104.24	103.68	104.44	0					24	14	3	0	0	0	0.67989	1	38290	38290		17.113	0	1	3103200	+		2681	22803	1739	1759	2622	2622					0.07688743105472895
ALFVKSTV	8	Unmodified	_ALFVKSTV_					0	0	0			REV__nc|ENSG00000159167|P52823-2|STC1	REV__nc|ENSG00000159167|P52823-2|STC1	MULTI-SECPEP	A375_MHC_IP_R1	1	433.1632385253906	2	432.763104	863.511654	-0.16803	-7.2715E-05	0.21911	9.4824E-05	0.051087	2.2109E-05	432.7631114629853	73.366	0.55835	73.366	73.082	73.64	0					20	10	3	0	0	0	0.69059	1	26738	26738		38.151	0	1	2776900	+		2682	20102	1740	1760	2623	2623					0.07443874391196914
ALFVKSTV	8	Unmodified	_ALFVKSTV_					0	0	0			REV__nc|ENSG00000159167|P52823-2|STC1	REV__nc|ENSG00000159167|P52823-2|STC1	MULTI-MSMS	A375_MHC_IP_R2	2	433.28509521484375	2	432.763104	863.511654	-0.3902	-0.00016886	-0.31895	-0.00013803	-0.70916	-0.0003069	432.76293011734913	72.437	0.65818	73.172	72.821	73.48	0.73541					18	12	2	0	0	0	0.68907	1	27567	27567		38.151	4.0487	1	1864600	+		2683	20102	1740	1760	2624	2624					0.07443874391196914
ALFVRLLALA	10	Unmodified	_ALFVRLLALA_					0	0	0		ENSG00000120708|ENST00000442011|TGFBI;ENST00000504185.5_1_5:135364744-135380547:+|nuORF	ENSG00000120708|ENST00000442011|TGFBI	ENSG00000120708|ENST00000442011|TGFBI	MULTI-SECPEP	A375_MHC_IP_R1	1	544.2557983398438	2	543.855327	1085.6961	-0.37598	-0.00020448	0.32363	0.00017601	-0.052351	-2.8471E-05	543.8556735113107	128.06	0.25354	128.06	127.97	128.23	0					11	4	4	0	0	0	0.55923	1	49179	49179		62.573	53.979	1	9497000			2684	3681	1741	1761	2625	2625					0.1566806254174935
ALFVRLLALA	10	Unmodified	_ALFVRLLALA_					0	0	0		ENSG00000120708|ENST00000442011|TGFBI;ENST00000504185.5_1_5:135364744-135380547:+|nuORF	ENSG00000120708|ENST00000442011|TGFBI	ENSG00000120708|ENST00000442011|TGFBI	MULTI-SECPEP	A375_MHC_IP_R2	2	544.254638671875	2	543.855327	1085.6961	-0.86019	-0.00046782	0.25007	0.000136	-0.61012	-0.00033182	543.8555631803557	127.77	0.25271	128.04	127.92	128.17	0.26592					9	4	3	0	0	0	0.69834	1	50169	50169		34.402	28.196	1	7759800			2685	3681	1741	1761	2626	2626					0.1566806254174935
ALGAFLFIA	9	Unmodified	_ALGAFLFIA_					0	0	0			REV__CLDN1|p.L128F|1|0.38|ENSG00000163347|chr3:190312878-190312878|G/A|missense_variant	REV__CLDN1|p.L128F|1|0.38|ENSG00000163347|chr3:190312878-190312878|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	462.1733703613281	2	461.773471	921.53239	-0.51453	-0.00023759	0.21036	9.7138E-05	-0.30417	-0.00014046	461.77350436157906	134.99	0.30563	134.99	134.83	135.13	0					11	5	3	0	0	0	0.27873	1	52062	52062		45.75	0	1	12158000	+		2686	15798	1742	1762	2627	2627					0.06848464770837381
ALGAFLFIA	9	Unmodified	_ALGAFLFIA_					0	0	0			REV__CLDN1|p.L128F|1|0.38|ENSG00000163347|chr3:190312878-190312878|G/A|missense_variant	REV__CLDN1|p.L128F|1|0.38|ENSG00000163347|chr3:190312878-190312878|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	922.9386596679688	1	922.539666	921.53239	-0.19508	-0.00017997	0.24817	0.00022895	0.05309	4.8977E-05	922.5397608614027	134.83	1.1687	134.97	134.75	135.92	0.13901					56	22	5	0	0	0	0.12743	1	53271	53271		45.75	0	1	312590000	+		2687	15798	1742	1762	2628	2628					0.06848464770837381
ALGAFLFIA	9	Unmodified	_ALGAFLFIA_					0	0	0			REV__CLDN1|p.L128F|1|0.38|ENSG00000163347|chr3:190312878-190312878|G/A|missense_variant	REV__CLDN1|p.L128F|1|0.38|ENSG00000163347|chr3:190312878-190312878|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	462.17340087890625	2	461.773471	921.53239	-0.37112	-0.00017137	0.30357	0.00014018	-0.067543	-3.119E-05	461.77354003111833	134.84	0.30144	134.98	134.8	135.1	0.13901					9	5	2	0	0	0	0.14801	1	53034	53034		56.048	0	1	13945000	+		2688	15798	1742	1762	2629	2629					0.06848464770837381
ALGAFLFIA	9	Unmodified	_ALGAFLFIA_					0	0	0			REV__CLDN1|p.L128F|1|0.38|ENSG00000163347|chr3:190312878-190312878|G/A|missense_variant	REV__CLDN1|p.L128F|1|0.38|ENSG00000163347|chr3:190312878-190312878|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		1	922.539666	921.53239	-0.3585	-0.00033073	0.054905	5.0652E-05	-0.30359	-0.00028008	922.5395934408854	135	1.4252	135	134.78	136.2	0	0.016836	-9.418E-05	NaN	45.75	67	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	353190000	+		2689	15798	1742	1762							0.06848464770837381
ALGAFLFIA	9	Unmodified	_ALGAFLFIA_					0	0	0			REV__CLDN1|p.L128F|1|0.38|ENSG00000163347|chr3:190312878-190312878|G/A|missense_variant	REV__CLDN1|p.L128F|1|0.38|ENSG00000163347|chr3:190312878-190312878|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	922.539666	921.53239	-0.19508	-0.00017997	0.24817	0.00022895	0.05309	4.8977E-05	922.5397608614027	134.83	1.1687	134.97	134.75	135.92	0.13901	-0.016836	8.4119E-05	NaN	45.75	56	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	312590000	+		2690	15798	1742	1762							0.06848464770837381
ALGAPKKVK	9	Unmodified	_ALGAPKKVK_					0	0	0		ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	MULTI-SECPEP	A375_MHC_IP_R1	1	456.17132568359375	2	456.30547	910.596387	-0.24169	-0.00011028	0.15603	7.1197E-05	-0.085662	-3.9088E-05	456.3053954800481	75.065	0.60695	75.065	74.857	75.464	0					17	11	2	0	0	0	0.77244	1	27478	27478		9.3474	1.4373	1	1657800			2691	8634	1743	1763	2630	2630					0.137512449278006
ALGAVVKV	8	Unmodified	_ALGAVVKV_					0	0	0		ENSG00000234616|ENST00000612905|JRK	ENSG00000234616|ENST00000612905|JRK	ENSG00000234616|ENST00000612905|JRK	MULTI-SECPEP	A375_MHC_IP_R1	1	378.61468505859375	2	378.752539	755.490525	0.82435	0.00031223	-0.12609	-4.7758E-05	0.69826	0.00026447	378.752309751744	49.292	0.40553	49.292	49.033	49.439	0					11	7	2	0	0	0	0.84748	1	17424	17424		28.487	6.7402	1	655720			2692	9741	1744	1764	2631	2631					0.1029990908233458
ALGDIREV	8	Unmodified	_ALGDIREV_					0	0	0		ENSG00000154945|ENST00000285243|ANKRD40;ENST00000507114.1_1_17:48777854-48785015:-|nuORF	ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	MULTI-SECPEP	A375_MHC_IP_R1	1	437.14532470703125	2	436.745442	871.476331	0.033486	1.4625E-05	-0.27233	-0.00011894	-0.23884	-0.00010431	436.7453180264384	47.892	0.55511	47.892	47.668	48.223	0					23	10	3	0	0	0	0.72637	1	16828	16828		39.95	0	1	12856000			2693	6117	1745	1765	2632	2632					0.035452118633770624
ALGDIREV	8	Unmodified	_ALGDIREV_					0	0	0		ENSG00000154945|ENST00000285243|ANKRD40;ENST00000507114.1_1_17:48777854-48785015:-|nuORF	ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	MULTI-SECPEP	A375_MHC_IP_R2	2	437.1452941894531	2	436.745442	871.476331	-0.086181	-3.7639E-05	-0.1097	-4.7912E-05	-0.19588	-8.5551E-05	436.7453746153818	46.979	0.66109	47.741	47.513	48.174	0.76128					29	12	3	0	0	0	0.21478	1	17606	17606		82.529	21.172	1	15043000			2694	6117	1745	1765	2633	2633					0.035452118633770624
ALGDRIFGL	9	Unmodified	_ALGDRIFGL_					0	0	0		nc|ENSG00000143127|O75578-3|ITGA10;ENSG00000143127|ENST00000369304|ITGA10	nc|ENSG00000143127|O75578-3|ITGA10	nc|ENSG00000143127|O75578-3|ITGA10	MULTI-SECPEP	A375_MHC_IP_R1	1	481.6765441894531	2	481.276909	960.539266	-0.3708	-0.00017846	0.045504	2.19E-05	-0.3253	-0.00015656	481.27685123789723	100.2	0.50729	100.2	99.925	100.43	0					14	9	2	0	0	0	0.11849	1	36813	36813		70.332	24.632	1	3121000			2695	5347	1746	1766	2634	2634					0.05741777651439861
ALGDRIFGL	9	Unmodified	_ALGDRIFGL_					0	0	0		nc|ENSG00000143127|O75578-3|ITGA10;ENSG00000143127|ENST00000369304|ITGA10	nc|ENSG00000143127|O75578-3|ITGA10	nc|ENSG00000143127|O75578-3|ITGA10	MULTI-SECPEP	A375_MHC_IP_R2	2	481.67657470703125	2	481.276909	960.539266	-0.3851	-0.00018534	-0.30661	-0.00014756	-0.6917	-0.0003329	481.2766795488969	99.191	0.56114	99.951	99.758	100.32	0.75977					16	10	2	0	0	0	0.16595	1	37645	37645		61.602	27.499	1	2839700			2696	5347	1746	1766	2635	2635					0.05741777651439861
ALGELSCYTL	10	Unmodified	_ALGELSCYTL_					0	0	0			REV__ENST00000253237.9_1_19:48956291-48956450:+|nuORF	REV__ENST00000253237.9_1_19:48956291-48956450:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	534.6754150390625	2	535.26535	1068.51615	-0.52025	-0.00027847	-0.072218	-3.8656E-05	-0.59247	-0.00031713	535.2654822760701	54.002	1.2678	54.002	53.656	54.924	0					30	24	2	0	0	0	0.92957	1	19516	19516		1.3295	0	1	1618700	+		2697	23135	1747	1767	2636	2636					-0.015370292482202785
ALGEPLYRV	9	Unmodified	_ALGEPLYRV_					0	0	0		ENSG00000100151|ENST00000356976|PICK1	ENSG00000100151|ENST00000356976|PICK1	ENSG00000100151|ENST00000356976|PICK1	MULTI-SECPEP	A375_MHC_IP_R1	1	509.6899108886719	2	509.290017	1016.56548	-0.4162	-0.00021197	-0.33199	-0.00016908	-0.74819	-0.00038105	509.28976516600176	63.822	0.86517	63.822	63.477	64.343	0					48	16	4	0	0	0	0.11711	1	23040	23040		60.074	27.768	1	9881500			2698	2127	1748	1768	2637	2637					0.05786046822890967
ALGEPLYRV	9	Unmodified	_ALGEPLYRV_					0	0	0		ENSG00000100151|ENST00000356976|PICK1	ENSG00000100151|ENST00000356976|PICK1	ENSG00000100151|ENST00000356976|PICK1	MULTI-SECPEP	A375_MHC_IP_R2	2	509.6891784667969	2	509.290017	1016.56548	-0.70332	-0.00035819	-0.33396	-0.00017008	-1.0373	-0.00052827	509.28992982230596	63.019	1.9791	63.762	63.333	65.312	0.74263					62	38	3	0	0	0	0.14572	1	23837	23837		62.573	28.47	1	12190000			2699	2127	1748	1768	2638	2638					0.05786046822890967
ALGFIHEA	8	Unmodified	_ALGFIHEA_					0	0	0		ENSG00000139211|ENST00000550413|AMIGO2;AMIGO2|p.N345*|1|0.2|ENSG00000139211|chr12:47077955-47077970|TAACCAGACTTCCATT/-|frameshift_variant;AMIGO2|p.R292C|1|0.9|ENSG00000139211|chr12:47078129-47078129|G/A|missense_variant	ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	MULTI-SECPEP	A375_MHC_IP_R1	1	429.6293029785156	2	429.229428	856.444303	-0.034323	-1.4733E-05	0.23718	0.00010181	0.20286	8.7073E-05	429.2295045801947	56.607	0.4572	56.607	56.347	56.804	0					18	8	3	0	0	0	0.73563	1	20280	20280		44.407	14.182	1	4585400			2700	123	1749	1769	2639	2639					0.010338441802218767
ALGFIHEA	8	Unmodified	_ALGFIHEA_					0	0	0		ENSG00000139211|ENST00000550413|AMIGO2;AMIGO2|p.N345*|1|0.2|ENSG00000139211|chr12:47077955-47077970|TAACCAGACTTCCATT/-|frameshift_variant;AMIGO2|p.R292C|1|0.9|ENSG00000139211|chr12:47078129-47078129|G/A|missense_variant	ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	MULTI-MSMS	A375_MHC_IP_R2	2	429.6291809082031	2	429.229428	856.444303	-0.29789	-0.00012786	-0.0042939	-1.8431E-06	-0.30218	-0.00012971	429.2294029125777	55.681	0.66186	56.432	56.135	56.796	0.75053					23	12	3	0	0	0	0.61116	1	21037	21037		44.407	14.182	1	4312100			2701	123	1749	1769	2640	2640					0.010338441802218767
ALGGGECGESL	11	Unmodified	_ALGGGECGESL_					0	0	0		nc|ENSG00000149639|O94964-4|MTCL2;nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1	nc|ENSG00000149639|O94964-4|MTCL2	nc|ENSG00000149639|O94964-4|MTCL2	MSMS	A375_MHC_IP_R2	2	496.6998596191406	2	496.721307	991.42806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.135	1	68.87	68.37	69.37	0.73511								0	0	0	0.1501	1	25820	25820		20.454	3.3671	1				2702	5824	1750	1770	2641	2641					-0.06799649838819732
ALGGHRPFPDL	11	Unmodified	_ALGGHRPFPDL_					0	0	0			REV__ENSG00000111676|ENST00000396684|ATN1	REV__ENSG00000111676|ENST00000396684|ATN1	MULTI-MSMS	A375_MHC_IP_R1	1	394.2804870605469	3	393.88049	1178.61964	0.19364	7.6271E-05	-0.097935	-3.8575E-05	0.095705	3.7696E-05	393.8803505309581	51.585	0.814	51.585	51.168	51.982	0					39	15	4	0	0	0	0.72651	1	18306	18306		12.228	12.228	1	8910200	+		2703	17685	1751	1771	2642	2642					0.0374763897448247
ALGGPERVTF	10	Unmodified	_ALGGPERVTF_					0	0	0		nc|ENSG00000142233|Q8WTR8-2|NTN5;ENST00000600468.1_1_19:49166991-49176216:-|nuORF;ENSG00000142233|ENST00000270235|NTN5	nc|ENSG00000142233|Q8WTR8-2|NTN5	nc|ENSG00000142233|Q8WTR8-2|NTN5	MULTI-MSMS	A375_MHC_IP_R2	2	524.2911987304688	2	523.785099	1045.55564	-0.92693	-0.00048551	4.0861	0.0021402	3.1592	0.0016547	523.7871177315673	59.577	0.25149	60.324	60.098	60.349	0.74714					6	4	2	0	0	0	0.45919	1	22547	22547		30.637	8.8899	1	1193500			2704	5299	1752	1772	2643	2643					0.03468858817495857
ALGILQGFLV	10	Unmodified	_ALGILQGFLV_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-SECPEP	A375_MHC_IP_R1	1	515.6460571289062	2	515.81841	1029.62227	-0.43912	-0.00022651	-0.58313	-0.00030079	-1.0222	-0.0005273	515.8185081027882	93.483	0.76553	93.483	93.023	93.789	0					20	14	2	0	0	0	0.90853	1	34368	34368		15.847	13.544	1	1496900			2705	2844	1753	1773	2644	2644					0.10864094379394373
ALGISMRH	8	Unmodified	_ALGISMRH_					0	0	0			REV__nc|ENSG00000170927|P08F94-2|PKHD1	REV__nc|ENSG00000170927|P08F94-2|PKHD1	MSMS	A375_MHC_IP_R2	2	442.6407470703125	2	442.742179	883.469806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.3	1	109.06	108.56	109.56	0.75436								0	0	0	0.16876	1	40898	40898		3.9444	1.0552	1		+		2706	21034	1754	1774	2645	2645					0.023409954310182002
ALGKQASF	8	Unmodified	_ALGKQASF_					0	0	0		ENSG00000184545|ENST00000397374|DUSP8	ENSG00000184545|ENST00000397374|DUSP8	ENSG00000184545|ENST00000397374|DUSP8	MULTI-SECPEP	A375_MHC_IP_R2	2	411.6294250488281	2	411.229428	820.444303	0.065922	2.7109E-05	0.032246	1.3261E-05	0.098169	4.037E-05	411.22930725887204	63.34	0.50695	64.08	63.785	64.292	0.74022					16	9	3	0	0	0	0.972	1	24016	24016		8.5933	0	1	1813400			2707	8593	1755	1775	2646	2646					0.02689844180235923
ALGLTTSTK	9	Unmodified	_ALGLTTSTK_					0	0	0			REV__ENST00000427836.7_2_2:208866461-208866548:-|nuORF	REV__ENST00000427836.7_2_2:208866461-208866548:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	446.6604309082031	2	446.260925	890.507297	-0.33064	-0.00014755	-1.1239	-0.00050155	-1.4545	-0.0006491	446.2603361878393	133.99	0.65964	133.99	133.66	134.32	0					18	12	2	0	0	0	0.75978	1	51666	51666		1.6526	1.6526	1	8185600	+		2708	24671	1756	1776	2647	2647					0.05766365177623811
ALGLTTSTK	9	Unmodified	_ALGLTTSTK_					0	0	0			REV__ENST00000427836.7_2_2:208866461-208866548:-|nuORF	REV__ENST00000427836.7_2_2:208866461-208866548:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	446.260925	890.507297	-0.33064	-0.00014755	-1.1239	-0.00050155	-1.4545	-0.0006491	446.2603361878393	133.99	0.65964	133.99	133.66	134.32	0	0.0044248	-6.8763E-05	NaN	1.6526	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8185600	+		2709	24671	1756	1776							0.05766365177623811
ALGLTTSTK	9	Unmodified	_ALGLTTSTK_					0	0	0			REV__ENST00000427836.7_2_2:208866461-208866548:-|nuORF	REV__ENST00000427836.7_2_2:208866461-208866548:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	446.260925	890.507297	-0.27422	-0.00012237	-1.0037	-0.00044793	-1.278	-0.0005703	446.2603679428398	133.82	0.81761	133.98	133.8	134.62	0.16487	-0.0044248	3.848E-05	NaN	1.6526	27	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9996100	+		2710	24671	1756	1776							0.05766365177623811
ALGLYFSRDAY	11	Unmodified	_ALGLYFSRDAY_					0	0	0		nc|ENSG00000165731|P07949-2|RET;ENSG00000165731|ENST00000355710|RET	nc|ENSG00000165731|P07949-2|RET	nc|ENSG00000165731|P07949-2|RET	MULTI-SECPEP	A375_MHC_IP_R1	1	637.6932983398438	2	638.322045	1274.62954	-0.64074	-0.000409	2.4267	0.001549	1.786	0.00114	638.8250144447852	102.99	0.40803	102.99	102.71	103.12	0					15	7	3	0	0	0	0.97871	1	37864	37864		10.824	5.527	1	903840			2711	6986	1757	1777	2648	2648					0.003207821892146967
ALGNIVHGL	9	Unmodified	_ALGNIVHGL_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD;FOCAD|p.K1247Gfs*36|1|0.38|ENSG00000188352|chr9:20948333-20948346|AAAAGCTGAAGACT/-|frameshift_variant	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MULTI-MSMS	A375_MHC_IP_R2	2	447.66363525390625	2	447.263802	892.513051	-0.23284	-0.00010414	0.30179	0.00013498	0.06895	3.0839E-05	447.2637078106134	68.511	0.45483	69.247	69.07	69.525	0.73511					13	8	2	0	0	0	0.1978	1	25994	25994		38.151	13.477	1	1949000			2712	8904	1758	1778	2649	2649					0.06249508479936594
ALGNIVHGL	9	Unmodified	_ALGNIVHGL_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD;FOCAD|p.K1247Gfs*36|1|0.38|ENSG00000188352|chr9:20948333-20948346|AAAAGCTGAAGACT/-|frameshift_variant	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MULTI-MATCH	A375_MHC_IP_R1	1		2	447.263802	892.513051	0.4449	0.00019899	-0.29355	-0.0001313	0.15135	6.7692E-05	447.2635107124367	69.586	0.40553	69.586	69.326	69.732	0	0.1696	-0.00018028	NaN	38.151	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1433000			2713	8904	1758	1778							0.06249508479936594
ALGNLLRTRL	10	Unmodified	_ALGNLLRTRL_					0	0	0			REV__ENST00000578151.1_1_17:56787228-56811489:+|nuORF	REV__ENST00000578151.1_1_17:56787228-56811489:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	377.2649841308594	3	376.240018	1125.69823	0.20363	7.6613E-05	-2.763	-0.0010396	-2.5594	-0.00096294	376.23986006361883	30.968	1.1652	31.687	30.962	32.128	0.71857					61	22	5	0	0	0	0.70174	1	10864	10864		11.518	0.61892	1	19000000	+		2714	17527	1759	1779	2650	2650					0.14040491279547496
ALGNQSLLVT	10	Unmodified	_ALGNQSLLVT_					0	0	0			REV__nc|ENSG00000163803|Q6P1J6-3|PLB1	REV__nc|ENSG00000163803|Q6P1J6-3|PLB1	MULTI-SECPEP	A375_MHC_IP_R2	2	507.63177490234375	2	508.292756	1014.57096	-0.74117	-0.00037673	-0.14934	-7.5906E-05	-0.8905	-0.00045264	508.29248243883774	76.969	0.30393	77.712	77.453	77.757	0.74293					7	5	2	0	0	0	0.78945	1	29234	29234		9.3831	0.63772	1	1380400	+		2715	27321	1760	1780	2651	2651					0.06425725614712974
ALGNVRSL	8	Unmodified	_ALGNVRSL_					0	0	0			REV__SDR16C5|p.G183R|1|0.56|ENSG00000170786|chr8:56308946-56308946|C/T|missense_variant	REV__SDR16C5|p.G183R|1|0.56|ENSG00000170786|chr8:56308946-56308946|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	414.6115417480469	2	415.248152	828.481751	-0.033296	-1.3826E-05	-0.21776	-9.0426E-05	-0.25106	-0.00010425	415.2480093881531	30.124	0.30231	30.124	29.999	30.301	0					7	5	2	0	0	0	0.80467	1	9541	9541		27.629	0	1	6501100	+		2716	27929	1761	1781	2652	2652					0.06064935445840547
ALGNVRTV	8	Unmodified	_ALGNVRTV_					0	0	0		nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;ENST00000466514.5_1_7:150731570-150742433:+|nuORF;nc|ENSG00000197150|Q9NUT2-5|ABCB8;nc|ENSG00000197150|Q9NUT2-4|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8;ENST00000470645.5_1_7:150732911-150733055:+|nuORF	nc|ENSG00000197150|Q9NUT2-3|ABCB8	nc|ENSG00000197150|Q9NUT2-3|ABCB8	MULTI-SECPEP	A375_MHC_IP_R2	2	414.9459533691406	2	415.248152	828.481751	-0.8017	-0.00033291	0.19581	8.1309E-05	-0.6059	-0.0002516	415.2481743210333	29.358	0.50425	30.057	29.93	30.434	0.69872					10	9	2	0	0	0	0.90057	1	10275	10275		29.082	0	1	4512200			2717	9123	1762	1782	2653	2653					0.060649354458519156
ALGNYDYWP	9	Unmodified	_ALGNYDYWP_					0	0	0		SMPDL3A|p.H152Y|1|0.44|ENSG00000172594|chr6:122796951-122796951|C/T|missense_variant	SMPDL3A|p.H152Y|1|0.44|ENSG00000172594|chr6:122796951-122796951|C/T|missense_variant	SMPDL3A|p.H152Y|1|0.44|ENSG00000172594|chr6:122796951-122796951|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	367.3060302734375	3	366.834547	1097.48181	-0.007328	-2.6882E-06	0.46751	0.0001715	0.46018	0.00016881	366.83475107336716	66.845	0.40727	66.845	66.684	67.091	0					10	7	2	0	0	0	0.79683	1	24167	24167		0.26902	0	1	1101500			2718	29211	1763	1783	2654	2654					-0.06303109344821678
ALGPCEYVT	9	Unmodified	_ALGPCEYVT_					0	0	0			REV__ENST00000496498.1_1_9:139934226-139934605:-|nuORF	REV__ENST00000496498.1_1_9:139934226-139934605:-|nuORF	MSMS	A375_MHC_IP_R1	1	476.6744079589844	2	476.725861	951.437169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.458	1	50.458	49.958	50.958	0								0	0	0	0.1499	1	17877	17877		21.747	8.2388	1		+		2719	17478	1764	1784	2655	2655					-0.04049256482517194
ALGPGVPHI	9	Unmodified	_ALGPGVPHI_					0	0	0		nc|ENSG00000137054|Q9GZS1-1|POLR1E;ENST00000442009.6_1_9:37489340-37503196:+|nuORF;ENSG00000137054|ENST00000377798|POLR1E	nc|ENSG00000137054|Q9GZS1-1|POLR1E	nc|ENSG00000137054|Q9GZS1-1|POLR1E	MULTI-SECPEP	A375_MHC_IP_R1	1	431.1529846191406	2	430.75307	859.491587	-0.046954	-2.0226E-05	0.18371	7.9133E-05	0.13675	5.8907E-05	430.75307621138126	62.808	0.56416	62.808	62.557	63.121	0					17	10	2	0	0	0	0.090069	1	22676	22676		56.048	34.302	1	1893600			2720	14624	1765	1785	2656	2656					0.05622123451234984
ALGPGVPHI	9	Unmodified	_ALGPGVPHI_					0	0	0		nc|ENSG00000137054|Q9GZS1-1|POLR1E;ENST00000442009.6_1_9:37489340-37503196:+|nuORF;ENSG00000137054|ENST00000377798|POLR1E	nc|ENSG00000137054|Q9GZS1-1|POLR1E	nc|ENSG00000137054|Q9GZS1-1|POLR1E	MULTI-MSMS	A375_MHC_IP_R2	2	430.6654968261719	2	430.75307	859.491587	-0.47299	-0.00020374	-0.085504	-3.6831E-05	-0.55849	-0.00024057	430.75301051920394	61.968	0.50466	62.711	62.421	62.925	0.74263					20	9	3	0	0	0	0.12743	1	23471	23471		45.75	24.879	1	1865300			2721	14624	1765	1785	2657	2657					0.05622123451234984
ALGPGVVGI	9	Unmodified	_ALGPGVVGI_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A;nc|ENSG00000117362|Q96BI3-3|APH1A;ENST00000461320.5_1_1:150239547-150241394:-|nuORF	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MSMS	A375_MHC_IP_R1	1	782.3303833007812	1	782.477066	781.469789	-0.41629	-0.00032573	0.34888	0.00027299	-0.067403	-5.2742E-05	782.4772938689176	93.712	0.55816	93.712	93.433	93.991	0					17	10	2	0	0	0	0.4782	1	34381	34381		20.871	0	1	5133200			2722	3476	1766	1786	2658	2658					0.07031318702672706
ALGPGVVGI	9	Unmodified	_ALGPGVVGI_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A;nc|ENSG00000117362|Q96BI3-3|APH1A;ENST00000461320.5_1_1:150239547-150241394:-|nuORF	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MSMS	A375_MHC_IP_R2	2	783.2410278320312	1	782.477066	781.469789	-0.90675	-0.00070951	0.82286	0.00064387	-0.083886	-6.5639E-05	782.477613225236	92.866	0.60867	93.605	93.341	93.95	0.73901					19	11	2	0	0	0	0.33325	1	35370	35370		28.173	5.7206	1	6079800			2723	3476	1766	1786	2659	2659					0.07031318702672706
ALGPIREL	8	Unmodified	_ALGPIREL_					0	0	0		nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	MULTI-SECPEP	A375_MHC_IP_R1	1	435.1661376953125	2	434.766178	867.517802	-0.060994	-2.6518E-05	0.20812	9.0483E-05	0.14713	6.3965E-05	434.76622024000403	62.736	0.92268	62.736	62.351	63.274	0					44	17	4	0	0	0	0.60242	1	22609	22609		54.774	12.679	1	35258000			2724	1064	1767	1787	2660	2660					0.07874392622716186
ALGPKPQGL	9	Unmodified	_ALGPKPQGL_					0	0	0		ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D	ENSG00000167548|ENST00000301067|KMT2D	ENSG00000167548|ENST00000301067|KMT2D	MULTI-SECPEP	A375_MHC_IP_R1	1	441.1662292480469	2	440.766178	879.517802	0.085176	3.7543E-05	0.074308	3.2752E-05	0.15948	7.0295E-05	440.7661709706182	37.376	0.35748	37.376	37.198	37.556	0					10	6	2	0	0	0	0.10969	1	12628	12628		39.957	23.015	1	3147500			2725	7193	1768	1788	2661	2661					0.07322392622711504
ALGPKPQGL	9	Unmodified	_ALGPKPQGL_					0	0	0		ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D	ENSG00000167548|ENST00000301067|KMT2D	ENSG00000167548|ENST00000301067|KMT2D	MULTI-MSMS	A375_MHC_IP_R2	2	441.165771484375	2	440.766178	879.517802	-0.64798	-0.00028561	0.2069	9.1195E-05	-0.44108	-0.00019441	440.76622198440697	36.494	0.40552	37.265	37.056	37.461	0.7709					12	7	2	0	0	0	0.077132	1	13328	13328		54.774	20.671	1	2661200			2726	7193	1768	1788	2662	2662					0.07322392622711504
ALGPLGALGAA	11	Unmodified	_ALGPLGALGAA_					0	0	0			REV__ENSG00000184828|ENST00000590800|ZBTB7C	REV__ENSG00000184828|ENST00000590800|ZBTB7C	MULTI-MSMS	A375_MHC_IP_R1	1	456.17132568359375	2	455.77146	909.528367	-0.24542	-0.00011185	0.48611	0.00022156	0.24069	0.0001097	455.7716489568593	75.455	0.65359	75.455	75.11	75.764	0					20	12	2	0	0	0	0.33033	1	27478	27478		44.407	4.4497	1	2311900	+		2727	21839	1769	1789	2663	2663					0.06998375277134983
ALGPLGALGAA	11	Unmodified	_ALGPLGALGAA_					0	0	0			REV__ENSG00000184828|ENST00000590800|ZBTB7C	REV__ENSG00000184828|ENST00000590800|ZBTB7C	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	455.77146	909.528367	-0.24542	-0.00011185	0.48611	0.00022156	0.24069	0.0001097	455.7716489568593	75.455	0.65359	75.455	75.11	75.764	0	0.031341	0.00028441	NaN	44.407	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2311900	+		2728	21839	1769	1789							0.06998375277134983
ALGPPSSRS	9	Unmodified	_ALGPPSSRS_					0	0	0			REV__ENST00000504406.5_1_5:176829295-176830555:-|nuORF	REV__ENST00000504406.5_1_5:176829295-176830555:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	436.63507080078125	2	436.235242	870.45593	-0.16815	-7.3351E-05	-0.60781	-0.00026515	-0.77596	-0.0003385	436.2349131440067	87.156	0.50712	87.889	87.56	88.067	0.733					15	9	2	0	0	0	0.64808	1	33177	33177		11.64	1.5664	1	1503000	+		2729	25526	1770	1790	2664	2664					0.015520412035698428
ALGPPSSRS	9	Unmodified	_ALGPPSSRS_					0	0	0			REV__ENST00000504406.5_1_5:176829295-176830555:-|nuORF	REV__ENST00000504406.5_1_5:176829295-176830555:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	436.235242	870.45593	-0.13317	-5.8093E-05	-0.57949	-0.00025279	-0.71266	-0.00031089	436.234910157724	87.975	0.45813	87.975	87.747	88.205	0	0.043105	1.3625E-05	NaN	11.64	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1931700	+		2730	25526	1770	1790							0.015520412035698428
ALGPPSSRS	9	Unmodified	_ALGPPSSRS_					0	0	0			REV__ENST00000504406.5_1_5:176829295-176830555:-|nuORF	REV__ENST00000504406.5_1_5:176829295-176830555:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	436.235242	870.45593	-0.16815	-7.3351E-05	-0.60781	-0.00026515	-0.77596	-0.0003385	436.2349131440067	87.156	0.50712	87.889	87.56	88.067	0.733	-0.043105	-1.1087E-05	NaN	11.64	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1503000	+		2731	25526	1770	1790							0.015520412035698428
ALGPTGRGV	9	Unmodified	_ALGPTGRGV_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	A375_MHC_IP_R1	1	414.6404724121094	2	414.240327	826.466101	0.20437	8.466E-05	-0.44584	-0.00018469	-0.24147	-0.00010003	414.240125964008	27.204	0.90909	27.204	26.978	27.887	0					42	17	3	0	0	0	0.015701	1	8183	8183		88.954	20.873	1	77327000			2732	2197	1771	1791	2665	2665					0.04592648928814924
ALGPTGRGV	9	Unmodified	_ALGPTGRGV_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-SECPEP	A375_MHC_IP_R2	2	414.6402282714844	2	414.240327	826.466101	-0.35075	-0.00014529	-0.12449	-5.1567E-05	-0.47523	-0.00019686	414.24022248096594	26.575	0.86808	27.235	27.008	27.876	0.65992					36	16	3	0	0	0	0.037185	1	8973	8973		85.272	17.928	1	56247000			2733	2197	1771	1791	2666	2666					0.04592648928814924
ALGRINVKNEE	11	Unmodified	_ALGRINVKNEE_					0	0	0		ENSG00000106436|ENST00000223167|MYL10	ENSG00000106436|ENST00000223167|MYL10	ENSG00000106436|ENST00000223167|MYL10	MSMS	A375_MHC_IP_R2	2	414.87615966796875	3	414.89821	1241.6728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.122	1	27.801	27.301	28.301	0.67857								0	0	0	0.16207	1	9232	9232		7.9454	4.0995	1				2734	2689	1772	1792	2667	2667					0.06162971966477926
ALGRLVAISV	10	Unmodified	_ALGRLVAISV_					0	0	0			REV__ENST00000597008.5_1_19:4100806-4102439:-|nuORF	REV__ENST00000597008.5_1_19:4100806-4102439:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	500.4748840332031	2	499.821484	997.628415	-0.68095	-0.00034035	-0.32188	-0.00016088	-1.0028	-0.00050123	500.3227615769252	96.706	0.50429	97.462	97.165	97.67	0.75587					12	9	2	0	0	0	0.77204	1	36746	36746		7.609	0	1	599600	+		2735	26477	1773	1793	2668	2668					0.1295061261093906
ALGRNSVLL	9	Unmodified	_ALGRNSVLL_					0	0	0		ENST00000379225.2_1_9:33935729-33948657:-|nuORF	ENST00000379225.2_1_9:33935729-33948657:-|nuORF	ENST00000379225.2_1_9:33935729-33948657:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	471.7174377441406	2	471.790184	941.565815	-0.71517	-0.00033741	-0.94902	-0.00044774	-1.6642	-0.00078515	471.7900000252382	72.403	0.86069	73.139	72.721	73.581	0.7354					25	16	2	0	0	0	0.5339	1	27419	27419		18.135	2.2878	1	1134300			2736	11328	1774	1794	2669	2669					0.0926946654275298
ALGRPDGN	8	Unmodified	_ALGRPDGN_					0	0	0		ENSG00000173572|ENST00000342929|NLRP13	ENSG00000173572|ENST00000342929|NLRP13	ENSG00000173572|ENST00000342929|NLRP13	MULTI-MSMS	A375_MHC_IP_R2	2	800.3220825195312	1	799.405692	798.398415	-0.90652	-0.00072468	-3.9718	-0.003175	-4.8783	-0.0038997	799.4058108457828	126.82	0.2028	127.08	126.9	127.11	0.26593					5	3	2	0	0	0	0.7479	1	49645	49645		20.871	2.7362	1	4357600			2737	7810	1775	1795	2670	2670					-0.00884801002007407
ALGRVFSLNF	10	Unmodified	_ALGRVFSLNF_					0	0	0		ENSG00000279051|ENST00000302622|OR6Q1	ENSG00000279051|ENST00000302622|OR6Q1	ENSG00000279051|ENST00000302622|OR6Q1	MULTI-SECPEP	A375_MHC_IP_R1	1	562.6150512695312	2	562.316566	1122.61858	-0.65522	-0.00036844	0.18596	0.00010457	-0.46926	-0.00026387	562.3165558739817	66.508	0.66245	66.508	66.173	66.836	0					22	12	3	0	0	0	0.60238	1	24078	24078		39.95	7.164	1	3782100			2738	10042	1776	1796	2671	2671					0.06217424605551969
ALGSAPAHLTL	11	Unmodified	_ALGSAPAHLTL_					0	0	0		ENST00000571650.5_1_17:1531532-1531625:-|nuORF	ENST00000571650.5_1_17:1531532-1531625:-|nuORF	ENST00000571650.5_1_17:1531532-1531625:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	526.176513671875	2	525.800749	1049.58694	-0.31006	-0.00016303	-2.7499	-0.0014459	-3.0599	-0.0016089	525.799821524956	110.31	0.51115	111.04	110.83	111.34	0.73692					18	9	3	0	0	0	0.82225	1	41554	41554		29.082	5.9332	1	1498900			2739	13608	1777	1797	2672	2672					0.06413431851615314
ALGSGISKV	9	Unmodified	_ALGSGISKV_					0	0	0		ENSG00000120318|ENST00000239440|ARAP3;nc|ENSG00000120318|Q8WWN8-2|ARAP3	ENSG00000120318|ENST00000239440|ARAP3	ENSG00000120318|ENST00000239440|ARAP3	MULTI-MSMS	A375_MHC_IP_R1	1	416.6505432128906	2	416.25036	830.486168	0.246	0.0001024	-0.21022	-8.7505E-05	0.035776	1.4892E-05	416.2501723225087	34.733	0.35426	34.733	34.405	34.759	0					11	6	3	0	0	0	0.29123	1	11487	11487		31.268	5.0002	1	5390500			2740	3658	1778	1798	2673	2673					0.06414399868754117
ALGSGISKV	9	Unmodified	_ALGSGISKV_					0	0	0		ENSG00000120318|ENST00000239440|ARAP3;nc|ENSG00000120318|Q8WWN8-2|ARAP3	ENSG00000120318|ENST00000239440|ARAP3	ENSG00000120318|ENST00000239440|ARAP3	MULTI-MSMS	A375_MHC_IP_R2	2	416.6502990722656	2	416.25036	830.486168	-0.51456	-0.00021419	0.87817	0.00036554	0.36361	0.00015135	416.2508109016715	33.896	0.40417	34.649	34.399	34.803	0.75225					12	7	3	0	0	0	0.14858	1	12204	12204		41.956	9.1699	1	2858300			2741	3658	1778	1798	2674	2674					0.06414399868754117
ALGSILAYLTD	11	Unmodified	_ALGSILAYLTD_					0	0	0		ENSG00000107719|ENST00000263563|PALD1	ENSG00000107719|ENST00000263563|PALD1	ENSG00000107719|ENST00000263563|PALD1	MULTI-MSMS	A375_MHC_IP_R1	1	379.92950439453125	3	379.544773	1135.61249	0.46362	0.00017596	-0.03056	-1.1599E-05	0.43306	0.00016436	379.54475579241694	56.473	0.81297	56.473	56.092	56.905	0					43	15	4	0	0	0	0.72565	1	20288	20288		7.0371	0	1	23275000			2742	2751	1779	1799	2675	2675					0.050108615833551085
ALGSKEIPKG	10	Unmodified	_ALGSKEIPKG_					0	0	0		ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1	ENSG00000035928|ENST00000349703|RFC1	ENSG00000035928|ENST00000349703|RFC1	MULTI-SECPEP	A375_MHC_IP_R2	2	500.4748229980469	2	500.295299	998.576045	-0.73263	-0.00036653	0.73639	0.00036841	0.0037607	1.8815E-06	500.29581734450767	72.371	0.304	73.106	72.922	73.226	0.73541					7	5	2	0	0	0	0.79457	1	27506	27506		26.268	6.9062	1	813320			2743	1134	1780	1800	2676	2676					0.07670029477333173
ALGSKITGFL	10	Unmodified	_ALGSKITGFL_					0	0	0		SCGB1D1|p.E30K|1|0.64|ENSG00000168515|chr11:62192088-62192088|G/A|missense_variant	SCGB1D1|p.E30K|1|0.64|ENSG00000168515|chr11:62192088-62192088|G/A|missense_variant	SCGB1D1|p.E30K|1|0.64|ENSG00000168515|chr11:62192088-62192088|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	504.1999816894531	2	503.800217	1005.58588	-0.26306	-0.00013253	0.034922	1.7594E-05	-0.22814	-0.00011494	503.8002415806891	71.082	0.51376	71.082	70.749	71.262	0					20	9	3	0	0	0	0.42954	1	25825	25825		34.402	0	1	3923200			2744	29112	1781	1801	2677	2677					0.08331217482702868
ALGSPMYFII	10	Unmodified	_ALGSPMYFII_					0	0	0		C3|p.S27F|1|0.32|ENSG00000125730|chr19:6719398-6719398|G/A|missense_variant	C3|p.S27F|1|0.32|ENSG00000125730|chr19:6719398-6719398|G/A|missense_variant	C3|p.S27F|1|0.32|ENSG00000125730|chr19:6719398-6719398|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	556.6959228515625	2	556.296453	1110.57835	-0.55714	-0.00030994	2.2495	0.0012514	1.6924	0.00094145	556.2975002592174	75.526	0.50281	75.526	75.312	75.815	0					11	9	2	0	0	0	0.65982	1	27551	27551		20.454	4.6064	1	1290400			2745	267	1782	1802	2678	2678					0.02748741890763995
ALGTVTNV	8	Unmodified	_ALGTVTNV_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	A375_MHC_IP_R1	1	388.12152099609375	2	387.721436	773.428318	0.25558	9.9096E-05	0.31116	0.00012064	0.56674	0.00021974	387.7215557296703	50.89	0.50481	50.89	50.663	51.168	0					17	9	2	0	0	0	0.19889	1	18054	18054		67.344	22.937	1	3553500			2746	3064	1783	1803	2679	2679					0.03254137943326896
ALGTVTNV	8	Unmodified	_ALGTVTNV_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	A375_MHC_IP_R1	1	774.4189453125	1	774.435595	773.428318	-0.43212	-0.00033465	0.24145	0.00018699	-0.19066	-0.00014766	774.4357297322485	50.89	0.55561	50.89	50.613	51.168	0					22	10	3	0	0	0	0.073333	1	18075	18075		99.799	32.455	1	15649000			2747	3064	1783	1803	2680	2680					0.03254137943326896
ALGTVTNV	8	Unmodified	_ALGTVTNV_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	A375_MHC_IP_R2	2	388.12139892578125	2	387.721436	773.428318	-0.36158	-0.00014019	0.51865	0.00020109	0.15707	6.09E-05	387.72154182941034	50.089	0.56032	50.843	50.548	51.108	0.75406					15	10	2	0	0	0	0.32803	1	18819	18819		56.541	24.424	1	2779400			2748	3064	1783	1803	2681	2681					0.03254137943326896
ALGTVTNV	8	Unmodified	_ALGTVTNV_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MATCH	A375_MHC_IP_R2	2		1	774.435595	773.428318	-1.1617	-0.00089963	0.5231	0.00040511	-0.63856	-0.00049452	774.4359192010979	50.09	0.61093	50.844	50.548	51.159	0.75406	-0.023014	8.9868E-05	NaN	99.799	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10838000			2749	3064	1783	1803							0.03254137943326896
ALGVLRRPL	9	Unmodified	_ALGVLRRPL_					0	0	0			REV__nc|ENSG00000117305|P35914-3|HMGCL	REV__nc|ENSG00000117305|P35914-3|HMGCL	MULTI-SECPEP	A375_MHC_IP_R2	2	498.2292785644531	2	497.829643	993.644734	-0.86384	-0.00043004	0.053517	2.6642E-05	-0.81032	-0.0004034	497.82958673858525	38.601	0.3567	39.376	39.2	39.556	0.77451					13	6	3	0	0	0	0.74651	1	14230	14230		8.5933	5.7041	1	3762800			2750	18001	1784	1804	2682	2682					0.14765738567689368
ALGVTITKTL	10	Unmodified	_ALGVTITKTL_					0	0	0		nc|ENSG00000114547|Q9BZX4-2|ROPN1B;ENSG00000114547|ENST00000514116|ROPN1B;ENSG00000065371|ENST00000405845|ROPN1	nc|ENSG00000114547|Q9BZX4-2|ROPN1B	nc|ENSG00000114547|Q9BZX4-2|ROPN1B	MULTI-SECPEP	A375_MHC_IP_R1	1	509.2208557128906	2	508.82115	1015.62775	-0.17601	-8.956E-05	-0.15642	-7.9591E-05	-0.33244	-0.00016915	508.8209947480095	107.6	0.61317	107.6	107.34	107.95	0					26	11	4	0	0	0	0.47386	1	39477	39477		32.786	0	1	4202800			2751	1380	1785	1805	2683	2683					0.120557731712438
ALGVTITKTL	10	Unmodified	_ALGVTITKTL_					0	0	0		nc|ENSG00000114547|Q9BZX4-2|ROPN1B;ENSG00000114547|ENST00000514116|ROPN1B;ENSG00000065371|ENST00000405845|ROPN1	nc|ENSG00000114547|Q9BZX4-2|ROPN1B	nc|ENSG00000114547|Q9BZX4-2|ROPN1B	MULTI-SECPEP	A375_MHC_IP_R2	2	509.2210693359375	2	508.82115	1015.62775	-0.78613	-0.0004	0.2403	0.00012227	-0.54583	-0.00027773	508.82117197728365	106.38	0.76349	107.14	106.88	107.65	0.75977					27	14	3	0	0	0	0.60238	1	40208	40208		39.95	18.413	1	4155300			2752	1380	1785	1805	2684	2684					0.120557731712438
ALGWATPL	8	Unmodified	_ALGWATPL_					0	0	0			REV__ENST00000554803.5_3_14:35452198-35465902:+|nuORF	REV__ENST00000554803.5_3_14:35452198-35465902:+|nuORF	MSMS	A375_MHC_IP_R2	2	414.6247863769531	2	414.734346	827.454139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.955	1	77.697	77.197	78.197	0.74293								0	0	0	0.16876	1	29218	29218		26.341	5.4701	1		+		2753	26085	1786	1806	2685	2685					0.03351032185616987
ALGYAKAI	8	Unmodified	_ALGYAKAI_					0	0	0		ENSG00000166169|ENST00000370162|POLL	ENSG00000166169|ENST00000370162|POLL	ENSG00000166169|ENST00000370162|POLL	MULTI-SECPEP	A375_MHC_IP_R2	2	404.1422119140625	2	403.742171	805.469789	-0.13808	-5.5748E-05	0.11198	4.5212E-05	-0.026096	-1.0536E-05	403.74222291222014	50.419	0.50757	51.173	50.955	51.462	0.75406					15	9	2	0	0	0	0.78017	1	18988	18988		22.453	1.5814	1	2475600			2754	7034	1787	1807	2686	2686					0.059273187026519736
ALHACPHC	8	Unmodified	_ALHACPHC_					0	0	0		ZBTB9|p.R445G|1|0.3|ENSG00000213588|chr6:33456433-33456433|C/G|missense_variant;ENSG00000213588|ENST00000395064|ZBTB9	ZBTB9|p.R445G|1|0.3|ENSG00000213588|chr6:33456433-33456433|C/G|missense_variant	ZBTB9|p.R445G|1|0.3|ENSG00000213588|chr6:33456433-33456433|C/G|missense_variant	MSMS	A375_MHC_IP_R2	2	426.1607360839844	2	426.186183	850.357813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.069	1	72.803	72.303	73.303	0.73421								0	0	0	0.16876	1	27347	27347		11.114	4.7604	1				2755	9572	1788	1808	2687	2687					-0.0733518191764233
ALHDSSDYL	9	Unmodified	_ALHDSSDYL_					0	0	0		ENSG00000143418|ENST00000368954|CERS2;ENST00000482825.7_1_1:150939531-150940017:-|nuORF	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-MSMS	A375_MHC_IP_R1	1	510.7156677246094	2	510.735271	1019.45599	-0.43684	-0.00022311	-0.33019	-0.00016864	-0.76703	-0.00039175	510.7350306693719	40.805	0.35381	40.805	40.609	40.963	0					11	6	2	0	0	0	0.55818	1	14098	14098		16.942	1.0951	1	2278300			2756	5388	1789	1809	2688	2688					-0.05296003587102405
ALHDSSDYL	9	Unmodified	_ALHDSSDYL_					0	0	0		ENSG00000143418|ENST00000368954|CERS2;ENST00000482825.7_1_1:150939531-150940017:-|nuORF	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-SECPEP	A375_MHC_IP_R2	2	511.1339111328125	2	510.735271	1019.45599	-0.79779	-0.00040746	-0.58808	-0.00030035	-1.3859	-0.00070781	510.73502637205905	40.028	0.6601	40.803	40.371	41.031	0.77451					17	12	2	0	0	0	0.3243	1	14815	14815		44.407	16.234	1	2453200			2757	5388	1789	1809	2689	2689					-0.05296003587102405
ALHEPANWHL	10	Unmodified	_ALHEPANWHL_					0	0	0			REV__ENSG00000160294|ENST00000291688|MCM3AP	REV__ENSG00000160294|ENST00000291688|MCM3AP	MULTI-SECPEP	A375_MHC_IP_R1	1	396.164794921875	3	396.536724	1186.58834	-0.088537	-3.5108E-05	-0.68467	-0.0002715	-0.77321	-0.00030661	396.8706724267033	54.847	0.55894	54.847	54.567	55.126	0					14	10	2	0	0	0	0.93404	1	19684	19684		0	0	1	2427300	+		2758	20159	1790	1810	2690	2690					0.0025106594034696172
ALHEPANWHL	10	Unmodified	_ALHEPANWHL_					0	0	0			REV__ENSG00000160294|ENST00000291688|MCM3AP	REV__ENSG00000160294|ENST00000291688|MCM3AP	MULTI-SECPEP	A375_MHC_IP_R2	2	396.1643371582031	3	396.536724	1186.58834	-0.46906	-0.000186	-0.52165	-0.00020685	-0.99071	-0.00039285	396.53632492721624	54.021	0.56343	54.773	54.454	55.018	0.75105					17	10	2	0	0	0	0.93404	1	20465	20465		0.77653	0.63664	1	1209900	+		2759	20159	1790	1810	2691	2691					0.0025106594034696172
ALHHKDIAL	9	Unmodified	_ALHHKDIAL_					0	0	0		IBTK|p.Y927Tfs*4|1|0.31|ENSG00000005700|chr6:82201433-82201433|A/-|frameshift_variant;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;ENSG00000005700|ENST00000306270|IBTK;ENST00000505222.5_1_6:82901346-82950269:-|nuORF	IBTK|p.Y927Tfs*4|1|0.31|ENSG00000005700|chr6:82201433-82201433|A/-|frameshift_variant	IBTK|p.Y927Tfs*4|1|0.31|ENSG00000005700|chr6:82201433-82201433|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	508.6435546875	2	509.295633	1016.57671	-0.65237	-0.00033225	-0.13148	-6.6964E-05	-0.78386	-0.00039922	509.2956911463947	24.067	0.25393	24.067	23.94	24.194	0					6	4	2	0	0	0	0.65246	1	6704	6704		6.7232	0	1	2976100			2760	898	1791	1811	2692	2692					0.06908868917014388
ALHLIDKLR	9	Unmodified	_ALHLIDKLR_					0	0	0			REV__ENSG00000180884|ENST00000404801|ZNF792	REV__ENSG00000180884|ENST00000404801|ZNF792	MSMS	A375_MHC_IP_R2	2	360.2731628417969	3	360.229231	1077.66586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.979	1	37.749	37.249	38.249	0.7709								0	0	0	0.15142	1	13509	13509		13.615	2.1202	1		+		2761	21625	1792	1812	2693	2693					0.13013703876549698
ALHNHQVCV	9	Unmodified	_ALHNHQVCV_					0	0	0		nc|ENSG00000165115|Q86VH2-3|KIF27;nc|ENSG00000165115|Q86VH2-2|KIF27;ENSG00000165115|ENST00000297814|KIF27	nc|ENSG00000165115|Q86VH2-3|KIF27	nc|ENSG00000165115|Q86VH2-3|KIF27	MULTI-SECPEP	A375_MHC_IP_R1	1	510.1927490234375	2	510.755818	1019.49708	-0.63989	-0.00032683	-3.4284	-0.0017511	-4.0683	-0.0020779	510.7546917781426	28.074	0.50225	28.074	27.836	28.339	0					10	9	2	0	0	0	0.73662	1	8543	8543		2.3027	0	1	1664500			2762	6914	1793	1813	2694	2694					-0.011885210286095571
ALHPNLKIA	9	Unmodified	_ALHPNLKIA_					0	0	0			REV__ENST00000456632.1_1_X:92543289-92543514:-|nuORF	REV__ENST00000456632.1_1_X:92543289-92543514:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	489.1640625	2	488.800552	975.58655	0.072679	3.5526E-05	-0.53735	-0.00026266	-0.46467	-0.00022713	488.80023022848866	45.347	0.35195	45.347	45.132	45.484	0					9	6	2	0	0	0	0.69504	1	15791	15791		18.135	2.2878	1	1242600	+		2763	24937	1794	1814	2695	2695					0.09778056922402811
ALHPTPATHT	10	Unmodified	_ALHPTPATHT_					0	0	0		ENST00000467443.5_1_22:21831964-21846319:-|nuORF	ENST00000467443.5_1_22:21831964-21846319:-|nuORF	ENST00000467443.5_1_22:21831964-21846319:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	523.6749267578125	2	523.274898	1044.53524	-0.50334	-0.00026339	0.73601	0.00038513	0.23267	0.00012175	523.2747997924262	37.738	0.61347	37.738	37.402	38.016	0					28	11	4	0	0	0	0.55789	1	12789	12789		24.021	0.23079	1	6263300			2764	12280	1795	1815	2696	2696					0.014756881576886371
ALHSVFEGL	9	Unmodified	_ALHSVFEGL_					0	0	0		ENSG00000143570|ENST00000356205|SLC39A1;nc|ENSG00000143570|Q9NY26-2|SLC39A1	ENSG00000143570|ENST00000356205|SLC39A1	ENSG00000143570|ENST00000356205|SLC39A1	MULTI-SECPEP	A375_MHC_IP_R1	1	486.15277099609375	2	486.761092	971.507631	-0.37764	-0.00018382	-0.22823	-0.00011109	-0.60586	-0.00029491	486.76077345251366	80.82	1.0652	80.82	80.541	81.607	0					40	20	3	0	0	0	0.58271	1	29611	29611		26.884	8.7487	1	6489700			2765	5410	1796	1816	2697	2697					0.020737848974931694
ALICGFSWI	9	Unmodified	_ALICGFSWI_					0	0	0			REV__ENSG00000143479|ENST00000367109|DYRK3	REV__ENSG00000143479|ENST00000367109|DYRK3	MULTI-MSMS	A375_MHC_IP_R1	1	505.66162109375	2	505.262413	1008.51027	-0.36837	-0.00018612	-0.86926	-0.00043921	-1.2376	-0.00062533	505.2618368005323	75.179	0.85683	75.179	74.857	75.714	0					59	16	5	0	0	0	0.1978	1	27335	27335		38.151	2.107	1	29068000	+		2766	19361	1797	1817	2698	2698					0.0063591703077463535
ALIDEDPQA	9	Unmodified	_ALIDEDPQA_					0	0	0		ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	MULTI-SECPEP	A375_MHC_IP_R2	2	486.63739013671875	2	486.237647	970.460741	-0.99409	-0.00048336	-0.61981	-0.00030138	-1.6139	-0.00078474	486.23724048325965	53.936	0.46158	54.687	54.404	54.866	0.75105					11	8	2	0	0	0	0.50702	1	20393	20393		25.399	19.667	1	1547300			2767	6949	1798	1818	2699	2699					-0.025671194443361856
ALIEGQFMA	9	Oxidation (M)	_ALIEGQFM(Oxidation (M))A_		ALIEGQFM(1)A		ALIEGQFM(42)A	0	0	1		nc|ENSG00000093217|O75191-2|XYLB;ENSG00000093217|ENST00000207870|XYLB	nc|ENSG00000093217|O75191-2|XYLB	nc|ENSG00000093217|O75191-2|XYLB	MULTI-SECPEP	A375_MHC_IP_R1	1	498.64697265625	2	498.24696	994.479368	-0.2061	-0.00010269	0.21441	0.00010683	0.0083105	4.1407E-06	498.2470600901334	78.554	0.65933	78.554	78.301	78.96	0					26	12	3	0	0	0	0.38578	1	28662	28662		41.84	24.897	1	5114300			2768	2023	1799	1819	2700	2700		73			-0.018092810741109133
ALIEGQFMA	9	Unmodified	_ALIEGQFMA_					0	0	0		nc|ENSG00000093217|O75191-2|XYLB;ENSG00000093217|ENST00000207870|XYLB	nc|ENSG00000093217|O75191-2|XYLB	nc|ENSG00000093217|O75191-2|XYLB	MULTI-MSMS	A375_MHC_IP_R2	2	490.6489562988281	2	490.249503	978.484453	-0.49512	-0.00024273	-0.65079	-0.00031905	-1.1459	-0.00056178	490.2490057198122	95.978	0.4061	96.728	96.5	96.906	0.75045					10	7	2	0	0	0	0.2264	1	36484	36484		36.044	16.787	1	1260900			2769	2023	1799	1820	2701	2701					-0.0056497721150208235
ALIEKLVEL	9	Unmodified	_ALIEKLVEL_					0	0	0		ENST00000532469.1_1_11:65029724-65047127:+|nuORF;ENSG00000014138|ENST00000265465|POLA2	ENST00000532469.1_1_11:65029724-65047127:+|nuORF	ENST00000532469.1_1_11:65029724-65047127:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	514.7228393554688	2	514.323525	1026.6325	-0.40906	-0.00021039	-0.64204	-0.00033022	-1.0511	-0.0005406	514.3232116659311	105.42	0.50665	105.42	105.1	105.6	0					21	9	3	0	0	0	0.03341	1	38674	38674		103.42	20.89	1	6324700			2770	1028	1800	1821	2702	2702					0.12024657313986609
ALIEKLVEL	9	Unmodified	_ALIEKLVEL_					0	0	0		ENST00000532469.1_1_11:65029724-65047127:+|nuORF;ENSG00000014138|ENST00000265465|POLA2	ENST00000532469.1_1_11:65029724-65047127:+|nuORF	ENST00000532469.1_1_11:65029724-65047127:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	514.7230834960938	2	514.323525	1026.6325	-0.70476	-0.00036247	-0.17404	-8.9511E-05	-0.87879	-0.00045198	514.3234297473867	104.41	0.56028	105.18	104.85	105.41	0.76308					27	10	3	0	0	0	0.0098085	1	39458	39458		114.2	21.548	1	7649600			2771	1028	1800	1821	2703	2703					0.12024657313986609
ALIEQKVEL	9	Unmodified	_ALIEQKVEL_					0	0	0		nc|ENSG00000188026|Q5EBL4-2|RILPL1;ENSG00000188026|ENST00000376874|RILPL1;nc|ENSG00000188026|Q5EBL4-3|RILPL1;ENST00000340724.6_2_12:123957087-123997908:-|nuORF	nc|ENSG00000188026|Q5EBL4-2|RILPL1	nc|ENSG00000188026|Q5EBL4-2|RILPL1	MULTI-SECPEP	A375_MHC_IP_R1	1	522.2107543945312	2	521.810782	1041.60701	-0.60731	-0.0003169	0.31007	0.0001618	-0.29724	-0.0001551	521.811060693373	65.319	0.40861	65.319	65.105	65.514	0					19	7	3	0	0	0	0.10362	1	23659	23659		63.961	6.2385	1	3472400			2772	8874	1801	1822	2704	2704					0.0878718279154782
ALIEVPDGFTA	11	Unmodified	_ALIEVPDGFTA_					0	0	0		ENST00000478617.5_1_1:201952590-201969135:+|nuORF;ENSG00000176393|ENST00000295640|RNPEP	ENST00000478617.5_1_1:201952590-201969135:+|nuORF	ENST00000478617.5_1_1:201952590-201969135:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	567.1976318359375	2	566.797872	1131.58119	-0.50718	-0.00028747	0.64269	0.00036428	0.13551	7.6809E-05	566.7979506500393	119.84	0.916	119.84	119.23	120.15	0					21	17	2	0	0	0	0.14327	1	44381	44381		62.573	33.491	1	7253400			2773	8018	1802	1823	2705	2705					0.02066288549303863
ALIEVPDGFTA	11	Unmodified	_ALIEVPDGFTA_					0	0	0		ENST00000478617.5_1_1:201952590-201969135:+|nuORF;ENSG00000176393|ENST00000295640|RNPEP	ENST00000478617.5_1_1:201952590-201969135:+|nuORF	ENST00000478617.5_1_1:201952590-201969135:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	567.1966552734375	2	566.797872	1131.58119	-0.32843	-0.00018615	0.034292	1.9437E-05	-0.29414	-0.00016672	566.7977604757034	119.25	0.61057	119.78	119.38	119.99	0.5321					19	11	2	0	0	0	0.14327	1	45448	45448		62.573	36.305	1	20575000			2774	8018	1802	1823	2706	2706					0.02066288549303863
ALIFFFFFLRW	11	Unmodified	_ALIFFFFFLRW_					0	0	0		ENST00000597488.1_1_10:104211754-104212027:+|nuORF	ENST00000597488.1_1_10:104211754-104212027:+|nuORF	ENST00000597488.1_1_10:104211754-104212027:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	503.3481140136719	3	502.948064	1505.82236	-1.0575	-0.00053186	1.0535	0.00052987	-0.0039552	-1.9893E-06	502.9485569231838	56.987	0.51063	57.737	57.51	58.02	0.75015					15	9	2	0	0	0	1.001	1	21578	21578		0.094841	0	1	2740600			2775	13846	1803	1824	2707	2707					0.0896856904703327
ALIKQLFEA	9	Unmodified	_ALIKQLFEA_					0	0	0		ENSG00000186193|ENST00000409687|SAPCD2	ENSG00000186193|ENST00000409687|SAPCD2	ENSG00000186193|ENST00000409687|SAPCD2	MULTI-SECPEP	A375_MHC_IP_R1	1	517.2074584960938	2	516.808042	1031.60153	-0.58854	-0.00030416	-1.2567	-0.00064947	-1.8452	-0.00095363	516.8079131142533	87.475	0.61232	87.475	87.083	87.696	0					26	11	3	0	0	0	0.20451	1	32113	32113		41.956	26.108	1	5252100			2776	8728	1804	1825	2708	2708					0.08699503999764602
ALIKQLFEA	9	Unmodified	_ALIKQLFEA_					0	0	0		ENSG00000186193|ENST00000409687|SAPCD2	ENSG00000186193|ENST00000409687|SAPCD2	ENSG00000186193|ENST00000409687|SAPCD2	MULTI-SECPEP	A375_MHC_IP_R2	2	517.2079467773438	2	516.808042	1031.60153	-0.6118	-0.00031618	-0.62646	-0.00032376	-1.2383	-0.00063994	516.8081304121563	86.474	0.51192	87.207	86.845	87.357	0.733					20	9	3	0	0	0	0.14572	1	32879	32879		45.7	26.443	1	3384900			2777	8728	1804	1825	2709	2709					0.08699503999764602
ALIKYLLNISN	11	Unmodified	_ALIKYLLNISN_					0	0	0		tr|U7ST72|U7ST72_FUSNU2,3-bisphosphoglycerate-dependentphosphoglyceratemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gpmAPE=3SV=1	tr|U7ST72|U7ST72_FUSNU2,3-bisphosphoglycerate-dependentphosphoglyceratemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gpmAPE=3SV=1	tr|U7ST72|U7ST72_FUSNU2,3-bisphosphoglycerate-dependentphosphoglyceratemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gpmAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	631.7789916992188	2	631.379363	1260.74417	-0.6924	-0.00043717	1.0073	0.00063601	0.31493	0.00019884	631.3797807630713	76.294	0.25231	76.294	76.168	76.421	0					7	4	2	0	0	0	0.72513	1	27818	27818		16.566	2.1605	1	2209200			2778	29662	1805	1826	2710	2710					0.12423091671121256
ALIKYLLNISN	11	Unmodified	_ALIKYLLNISN_					0	0	0		tr|U7ST72|U7ST72_FUSNU2,3-bisphosphoglycerate-dependentphosphoglyceratemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gpmAPE=3SV=1	tr|U7ST72|U7ST72_FUSNU2,3-bisphosphoglycerate-dependentphosphoglyceratemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gpmAPE=3SV=1	tr|U7ST72|U7ST72_FUSNU2,3-bisphosphoglycerate-dependentphosphoglyceratemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gpmAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	631.779052734375	2	631.379363	1260.74417	-0.835	-0.0005272	0.91759	0.00057935	0.08259	5.2146E-05	631.3802658760919	75.414	0.35652	76.155	75.875	76.232	0.74052					11	6	2	0	0	0	0.73111	1	28655	28655		9.544	0.16085	1	2426800			2779	29662	1805	1826	2711	2711					0.12423091671121256
ALINVPPPFL	10	Unmodified	_ALINVPPPFL_					0	0	0		ENSG00000204394|ENST00000375663|VARS1;ENST00000461328.1_1_6:31750434-31752201:-|nuORF	ENSG00000204394|ENST00000375663|VARS1	ENSG00000204394|ENST00000375663|VARS1	MULTI-MSMS	A375_MHC_IP_R2	2	540.7290649414062	2	540.826235	1079.63792	-0.82829	-0.00044796	-2.5014	-0.0013528	-3.3297	-0.0018008	540.8250102430738	131.33	0.25552	131.52	131.34	131.59	0.18953					7	4	2	0	0	0	0.33603	1	51646	51646		37.974	8.8924	1	2132900			2780	9439	1806	1827	2712	2712					0.10128380896458111
ALIPIPLAV	9	Unmodified	_ALIPIPLAV_					0	0	0		nc|ENSG00000116815|P19256-2|CD58;nc|ENSG00000116815|P19256-3|CD58;ENSG00000116815|ENST00000369489|CD58;CD58|p.I226N|1|0.38|ENSG00000116815|chr1:116521935-116521935|A/T|missense_variant	nc|ENSG00000116815|P19256-2|CD58	nc|ENSG00000116815|P19256-2|CD58	MULTI-MSMS	A375_MHC_IP_R1	1	907.43310546875	1	906.602266	905.59499	-0.40192	-0.00036438	0.27869	0.00025266	-0.12323	-0.00011172	906.602624263862	133.18	0.40868	133.18	133	133.41	0					9	7	2	0	0	0	0.024178	1	51373	51373		79.935	23.886	1	16299000			2781	3435	1807	1828	2713	2713					0.13841610839028817
ALIPIPLAVI	10	Unmodified	_ALIPIPLAVI_					0	0	0		nc|ENSG00000116815|P19256-2|CD58;nc|ENSG00000116815|P19256-3|CD58;ENSG00000116815|ENST00000369489|CD58	nc|ENSG00000116815|P19256-2|CD58	nc|ENSG00000116815|P19256-2|CD58	MULTI-SECPEP	A375_MHC_IP_R1	1	510.2214050292969	2	510.346803	1018.67905	-0.74863	-0.00038206	-0.069315	-3.5375E-05	-0.81795	-0.00041744	510.34669065407803	137.03	0.20543	137.03	136.92	137.13	0					5	3	2	0	0	0	0.37407	1	52775	52775		32.117	7.4431	1	1058200			2782	3435	1808	1829	2714	2714					0.17046141935929882
ALIPIPLAVI	10	Unmodified	_ALIPIPLAVI_					0	0	0		nc|ENSG00000116815|P19256-2|CD58;nc|ENSG00000116815|P19256-3|CD58;ENSG00000116815|ENST00000369489|CD58	nc|ENSG00000116815|P19256-2|CD58	nc|ENSG00000116815|P19256-2|CD58	MULTI-SECPEP	A375_MHC_IP_R2	2	511.0340270996094	2	510.346803	1018.67905	-0.57237	-0.00029211	0.012883	6.5746E-06	-0.55949	-0.00028553	510.3466492640987	136.88	0.15385	136.99	136.92	137.07	0.11134					6	2	3	0	0	0	0.13605	1	53750	53750		59.795	10.126	1	1346300			2783	3435	1808	1829	2715	2715					0.17046141935929882
ALIPVINKL	9	Unmodified	_ALIPVINKL_					0	0	0		nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;ENST00000547932.5_1_12:32832273-32871588:+|nuORF;ENST00000550011.5_1_12:32832273-32858928:+|nuORF;ENST00000551076.5_1_12:32832273-32863873:+|nuORF	nc|ENSG00000087470|O00429-4|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	MULTI-SECPEP	A375_MHC_IP_R2	2	491.47222900390625	2	490.828778	979.643003	-0.52348	-0.00025694	0.74221	0.0003643	0.21873	0.00010736	490.82906072891177	96.165	0.40652	96.915	96.653	97.059	0.75045					12	7	2	0	0	0	0.55359	1	36488	36488		21.747	0	1	770600			2784	1874	1809	1830	2716	2716					0.15236684759088348
ALIQFLEQV	9	Unmodified	_ALIQFLEQV_					0	0	0		ENSG00000120054|ENST00000370418|CPN1;CON__Q2KJ83	ENSG00000120054|ENST00000370418|CPN1	ENSG00000120054|ENST00000370418|CPN1	MULTI-MSMS	A375_MHC_IP_R1	1	531.2046508789062	2	530.8055	1059.59645	-0.81063	-0.00043029	-0.6864	-0.00036434	-1.497	-0.00079463	530.8051444976443	130.79	0.20236	130.79	130.67	130.87	0					7	3	3	0	0	0	0.034481	1	50422	50422		71.134	27.275	1	21350000		+	2785	3646	1810	1831	2717	2717					0.0690320013713972
ALIQFLEQV	9	Unmodified	_ALIQFLEQV_					0	0	0		ENSG00000120054|ENST00000370418|CPN1;CON__Q2KJ83	ENSG00000120054|ENST00000370418|CPN1	ENSG00000120054|ENST00000370418|CPN1	MULTI-MSMS	A375_MHC_IP_R2	2	531.7070922851562	2	530.8055	1059.59645	-0.63976	-0.00033959	0.32333	0.00017162	-0.31643	-0.00016796	531.3073460363855	130.51	0.20242	130.73	130.65	130.86	0.2142					5	3	2	0	0	0	0.0090323	1	51347	51347		99.799	47.531	1	13495000		+	2786	3646	1810	1831	2718	2718					0.0690320013713972
ALIRRLPV	8	Unmodified	_ALIRRLPV_					0	0	0			REV__nc|ENSG00000186063|Q96BJ3-3|AIDA	REV__nc|ENSG00000186063|Q96BJ3-3|AIDA	MULTI-SECPEP	A375_MHC_IP_R1	1	468.6468200683594	2	469.318912	936.62327	-0.32106	-0.00015068	0.70769	0.00033213	0.38663	0.00018145	469.31909913274734	59.95	0.35667	59.95	59.803	60.159	0					11	6	2	0	0	0	0.95327	1	21592	21592		2.8892	0	1	1099600	+		2787	21942	1811	1832	2719	2719					0.15242353538974385
ALISGGTDTHL	11	Unmodified	_ALISGGTDTHL_					0	0	0		ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4	ENSG00000141076|ENST00000314423|UTP4	ENSG00000141076|ENST00000314423|UTP4	MULTI-SECPEP	A375_MHC_IP_R1	1	361.5736083984375	3	362.192623	1083.55604	0.052024	1.8843E-05	2.2899	0.00082939	2.3419	0.00084823	362.1932406139669	24.55	0.45494	24.55	24.397	24.852	0					12	8	2	0	0	0	0.98856	1	7128	7128		4.4062	1.0865	1	1347400			2788	5212	1812	1833	2720	2720					0.017602337466996687
ALISNSHQL	9	Unmodified	_ALISNSHQL_					0	0	0		nc|ENSG00000178573|O75444|MAF;ENSG00000178573|ENST00000326043|MAF	nc|ENSG00000178573|O75444|MAF	nc|ENSG00000178573|O75444|MAF	MULTI-SECPEP	A375_MHC_IP_R2	2	492.1688537597656	2	491.769448	981.524344	-0.89045	-0.0004379	1.0667	0.00052459	0.17629	8.6692E-05	491.7694736541073	38.544	0.81378	39.318	38.946	39.76	0.77451					44	15	4	0	0	0	0.025235	1	14178	14178		96.111	13.582	1	34019000			2789	8167	1813	1834	2721	2721					0.03284285783422547
ALISPDVVLIF	11	Unmodified	_ALISPDVVLIF_					0	0	0			REV__ENSG00000179846|ENST00000686631|NKPD1	REV__ENSG00000179846|ENST00000686631|NKPD1	MULTI-SECPEP	A375_MHC_IP_R2	2	594.59619140625	2	593.857732	1185.70091	-0.84147	-0.00049971	-3.1203	-0.001853	-3.9618	-0.0023527	593.8557016179026	61.911	0.25274	62.654	62.471	62.724	0.74263					6	4	2	0	0	0	0.98968	1	23479	23479		17.113	4.0704	1	1079400	+		2790	21582	1814	1835	2722	2722					0.11548901893843322
ALISPDVVLIF	11	Unmodified	_ALISPDVVLIF_					0	0	0			REV__ENSG00000179846|ENST00000686631|NKPD1	REV__ENSG00000179846|ENST00000686631|NKPD1	MULTI-MATCH	A375_MHC_IP_R1	1		2	593.857732	1185.70091	-0.25938	-0.00015403	-3.4071	-0.0020233	-3.6664	-0.0021773	593.8556390200554	62.714	0.35728	62.714	62.557	62.914	0	0.029999	-5.0171E-05	NaN	17.113	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1201400	+		2791	21582	1814	1835							0.11548901893843322
ALISVYNW	8	Unmodified	_ALISVYNW_					0	0	0			REV__GRM7|p.T223I|1|0.42|ENSG00000196277|chr3:7146600-7146600|C/T|missense_variant	REV__GRM7|p.T223I|1|0.42|ENSG00000196277|chr3:7146600-7146600|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	483.69232177734375	2	483.258185	964.501818	-0.18708	-9.0409E-05	-1.0601	-0.00051232	-1.2472	-0.00060273	483.25778586164625	70.353	1.0736	70.353	70.034	71.108	0					30	20	2	0	0	0	0.75322	1	25603	25603		19.439	4.8573	1	1412700	+		2792	26718	1815	1836	2723	2723					0.01814686385796449
ALISVYNW	8	Unmodified	_ALISVYNW_					0	0	0			REV__GRM7|p.T223I|1|0.42|ENSG00000196277|chr3:7146600-7146600|C/T|missense_variant	REV__GRM7|p.T223I|1|0.42|ENSG00000196277|chr3:7146600-7146600|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	483.65771484375	2	483.258185	964.501818	-0.48867	-0.00023615	-1.061	-0.00051271	-1.5496	-0.00074887	483.2580441982966	68.203	1.3717	68.203	67.955	69.326	0					44	26	3	0	0	0	0.59711	1	24726	24726		53.576	15.424	1	2520600	+		2793	26718	1815	1836	2724	2724					0.01814686385796449
ALISVYNW	8	Unmodified	_ALISVYNW_					0	0	0			REV__GRM7|p.T223I|1|0.42|ENSG00000196277|chr3:7146600-7146600|C/T|missense_variant	REV__GRM7|p.T223I|1|0.42|ENSG00000196277|chr3:7146600-7146600|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	483.6575622558594	2	483.258185	964.501818	-0.48398	-0.00023389	-0.3761	-0.00018175	-0.86008	-0.00041564	483.2580687992453	68.004	0.66115	68.739	68.51	69.171	0.73511					22	12	2	0	0	0	0.45507	1	25767	25767		50.855	50.855	1	1622100	+		2794	26718	1815	1836	2725	2725					0.01814686385796449
ALITRIFGV	9	Unmodified	_ALITRIFGV_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;ENST00000436947.1_1_2:43711555-43732871:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	A375_MHC_IP_R1	1	495.7108154296875	2	495.310752	988.606951	-0.1452	-7.1919E-05	-0.030881	-1.5296E-05	-0.17608	-8.7215E-05	495.3106499752169	109.21	0.81296	109.21	108.81	109.63	0					40	15	4	0	0	0	0.017727	1	40003	40003		86.332	30.155	1	12351000			2795	3357	1816	1837	2726	2726					0.11219227582228086
ALITRIFGV	9	Unmodified	_ALITRIFGV_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;ENST00000436947.1_1_2:43711555-43732871:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-SECPEP	A375_MHC_IP_R2	2	495.7103576660156	2	495.310752	988.606951	-0.47449	-0.00023502	0.20906	0.00010355	-0.26543	-0.00013147	495.3107960233511	108.12	0.71501	108.88	108.61	109.32	0.75436					36	13	4	0	0	0	0.090157	1	40793	40793		76.825	29.076	1	14097000			2796	3357	1816	1837	2727	2727					0.11219227582228086
ALIYGTPRAA	10	Unmodified	_ALIYGTPRAA_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1947631835938	2	516.795466	1031.57638	-0.7035	-0.00036357	-0.56957	-0.00029435	-1.2731	-0.00065792	516.7949599442605	44.308	0.55712	45.078	44.782	45.34	0.7691					24	10	3	0	0	0	0.63381	1	16540	16540		38.176	5.8701	1	3675000			2797	2847;8891	1817	1838	2728	2728					0.06185449197187154
ALKDLINEA	9	Unmodified	_ALKDLINEA_					0	0	0		ENSG00000132646|ENST00000379143|PCNA;PCNA|p.K110Sfs*5|1|0.32|ENSG00000132646|chr20:5118667-5118668|TT/-|frameshift_variant	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-SECPEP	A375_MHC_IP_R1	1	494.17889404296875	2	493.779482	985.544411	-0.69348	-0.00034243	0.30008	0.00014817	-0.39341	-0.00019426	493.7797203028018	67.425	1.372	67.425	66.938	68.31	0					86	26	4	0	0	0	0.011357	1	24381	24381		125.53	32.876	1	60467000			2798	4431	1818	1839	2729	2729					0.051060367233731085
ALKDLINEA	9	Unmodified	_ALKDLINEA_					0	0	0		ENSG00000132646|ENST00000379143|PCNA;PCNA|p.K110Sfs*5|1|0.32|ENSG00000132646|chr20:5118667-5118668|TT/-|frameshift_variant	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-SECPEP	A375_MHC_IP_R2	2	494.17926025390625	2	493.779482	985.544411	-0.59852	-0.00029554	0.13251	6.5432E-05	-0.46601	-0.00023011	493.7796205102363	66.596	1.6804	67.332	66.78	68.461	0.73631					87	32	5	0	0	0	0.011031	1	25179	25179		140.63	47.98	1	64778000			2799	4431	1818	1839	2730	2730					0.051060367233731085
ALKEFKLERE	10	Unmodified	_ALKEFKLERE_					0	0	0		ENSG00000023287|ENST00000025008|RB1CC1;nc|ENSG00000023287|Q8TDY2-2|RB1CC1	ENSG00000023287|ENST00000025008|RB1CC1	ENSG00000023287|ENST00000025008|RB1CC1	MULTI-MSMS	A375_MHC_IP_R1	1	422.942138671875	3	421.574955	1261.70304	0.098956	4.1717E-05	-0.28613	-0.00012062	-0.18717	-7.8906E-05	421.5748468205133	20.332	0.65862	20.332	19.98	20.638	0					44	12	5	0	0	0	0.68889	1	5221	5221		14.218	2.7003	1	40385000			2800	1075	1819	1840	2731	2731					0.08265330631684265
ALKELQQIY	9	Unmodified	_ALKELQQIY_					0	0	0			REV__ENSG00000117408|ENST00000372343|IPO13	REV__ENSG00000117408|ENST00000372343|IPO13	MULTI-SECPEP	A375_MHC_IP_R1	1	553.6484985351562	2	553.316232	1104.61791	-0.59727	-0.00033048	2.3491	0.0012998	1.7518	0.00096931	553.8191016643668	64.554	0.40784	64.554	64.343	64.75	0					18	7	3	0	0	0	0.39388	1	23339	23339		39.957	5.77	1	1487300	+		2801	18006	1820	1841	2732	2732					0.06978585165870754
ALKGQFNF	8	Unmodified	_ALKGQFNF_					0	0	0		ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	MULTI-SECPEP	A375_MHC_IP_R1	1	463.1507263183594	2	462.750527	923.486502	-0.24151	-0.00011176	0.75778	0.00035066	0.51627	0.0002389	462.7505912484842	57.773	0.50671	57.773	57.568	58.075	0					12	9	2	0	0	0	0.91495	1	20781	20781		18.135	10.225	1	1324300			2802	5356	1821	1842	2733	2733					0.021698195886074245
ALKGQFNF	8	Unmodified	_ALKGQFNF_					0	0	0		ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	MULTI-SECPEP	A375_MHC_IP_R2	2	463.150390625	2	462.750527	923.486502	-0.97632	-0.00045179	0.43077	0.00019934	-0.54555	-0.00025245	462.75063350737065	56.853	0.51024	57.604	57.356	57.867	0.75014					17	9	3	0	0	0	0.8211	1	21514	21514		30.225	7.0764	1	3018600			2803	5356	1821	1842	2734	2734					0.021698195886074245
ALKKQEAKAD	10	Unmodified	_ALKKQEAKAD_					0	0	0		ENSG00000100629|ENST00000555265|CEP128;nc|ENSG00000100629|Q6ZU80-1|CEP128;nc|ENSG00000100629|Q6ZU80-3|CEP128	ENSG00000100629|ENST00000555265|CEP128	ENSG00000100629|ENST00000555265|CEP128	MULTI-MSMS	A375_MHC_IP_R2	2	368.2801208496094	3	367.880267	1100.61897	-0.24728	-9.0968E-05	0.19618	7.2172E-05	-0.051094	-1.8797E-05	367.8803589230216	25.261	0.66109	25.905	25.619	26.28	0.64368					28	12	3	0	0	0	0.71361	1	8451	8451		3.3196	0.24738	1	4147400			2804	2205	1822	1843	2735	2735					0.07268799534745085
ALKKQEAKAD	10	Unmodified	_ALKKQEAKAD_					0	0	0		ENSG00000100629|ENST00000555265|CEP128;nc|ENSG00000100629|Q6ZU80-1|CEP128;nc|ENSG00000100629|Q6ZU80-3|CEP128	ENSG00000100629|ENST00000555265|CEP128	ENSG00000100629|ENST00000555265|CEP128	MULTI-MATCH	A375_MHC_IP_R1	1		3	367.880267	1100.61897	0.012145	4.4679E-06	0.37406	0.00013761	0.3862	0.00014208	367.88045204950555	25.886	0.70908	25.886	25.664	26.373	0	-0.0093922	0.0001404	NaN	3.3196	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5253100			2805	2205	1822	1843							0.07268799534745085
ALKNYFFYYYF	11	Unmodified	_ALKNYFFYYYF_					0	0	0		ENST00000265138.3_1_5:90665956-90666349:-|nuORF	ENST00000265138.3_1_5:90665956-90666349:-|nuORF	ENST00000265138.3_1_5:90665956-90666349:-|nuORF	MSMS	A375_MHC_IP_R2	2	513.4691162109375	3	513.583339	1537.72819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.606	1	76.347	75.847	76.847	0.74052								0	0	0	0.16305	1	28701	28701		2.8433	1.3882	1				2806	10347	1823	1844	2736	2736					-0.019166145657663947
ALKPDLVNV	9	Unmodified	_ALKPDLVNV_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1;ENST00000493342.1_1_X:24745055-24752029:+|nuORF	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-SECPEP	A375_MHC_IP_R1	1	485.1924133300781	2	484.792392	967.570232	-0.253	-0.00012265	-0.62819	-0.00030454	-0.88119	-0.00042719	484.79186933936256	61.813	0.66343	61.813	61.534	62.198	0					19	12	2	0	0	0	0.14606	1	22310	22310		63.961	17.94	1	3966100			2807	2330	1824	1845	2737	2737					0.08514930965657186
ALKPDLVNV	9	Unmodified	_ALKPDLVNV_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1;ENST00000493342.1_1_X:24745055-24752029:+|nuORF	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-MSMS	A375_MHC_IP_R2	2	485.1920166015625	2	484.792392	967.570232	-0.89814	-0.00043541	-0.17549	-8.5075E-05	-1.0736	-0.00052049	484.79217322025005	60.932	0.40457	61.677	61.464	61.869	0.74504					12	7	2	0	0	0	0.050868	1	23097	23097		63.961	16.212	1	4434900			2808	2330	1824	1845	2738	2738					0.08514930965657186
ALKTACARNI	10	Unmodified	_ALKTACARNI_					0	0	0		nc|ENSG00000161542|Q14558|PRPSAP1;ENSG00000161542|ENST00000446526|PRPSAP1	nc|ENSG00000161542|Q14558|PRPSAP1	nc|ENSG00000161542|Q14558|PRPSAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	354.288818359375	3	354.202576	1059.5859	-0.28272	-0.00010014	-0.22656	-8.0248E-05	-0.50928	-0.00018039	354.2024498961905	32.716	0.66236	33.453	33.162	33.825	0.73692					19	12	2	0	0	0	0.91057	1	11653	11653		14.218	2.7235	1	2847400			2809	6475	1825	1846	2739	2739					0.05848894211044353
ALLAASIYSI	10	Unmodified	_ALLAASIYSI_					0	0	0		tr|U7SV29|U7SV29_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01107PE=4SV=1	tr|U7SV29|U7SV29_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01107PE=4SV=1	tr|U7SV29|U7SV29_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01107PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	511.6871032714844	2	511.30005	1020.58555	-0.53697	-0.00027455	-0.01011	-5.1691E-06	-0.54708	-0.00027972	511.30005931149174	64.939	1.2215	64.939	64.495	65.717	0					45	23	3	0	0	0	0.80715	1	23655	23655		16.942	1.0951	1	2285700			2810	29787	1826	1847	2740	2740					0.07607797762852897
ALLAELEKI	9	Unmodified	_ALLAELEKI_					0	0	0		ENSG00000150316|ENST00000279839|CWC15	ENSG00000150316|ENST00000279839|CWC15	ENSG00000150316|ENST00000279839|CWC15	MULTI-SECPEP	A375_MHC_IP_R1	1	500.7077331542969	2	500.307875	998.601197	-0.32546	-0.00016283	-0.12681	-6.3446E-05	-0.45227	-0.00022628	500.3076583971982	101.15	0.50815	101.15	100.99	101.5	0					15	9	2	0	0	0	0.061442	1	37195	37195		63.961	15.615	1	1135200			2811	5840	1827	1848	2741	2741					0.10184084279910621
ALLAELEKI	9	Unmodified	_ALLAELEKI_					0	0	0		ENSG00000150316|ENST00000279839|CWC15	ENSG00000150316|ENST00000279839|CWC15	ENSG00000150316|ENST00000279839|CWC15	MULTI-SECPEP	A375_MHC_IP_R2	2	500.47491455078125	2	500.307875	998.601197	-0.36363	-0.00018193	0.047001	2.3515E-05	-0.31663	-0.00015841	500.3078575807243	100.28	0.45957	101.04	100.78	101.24	0.76278					14	8	2	0	0	0	0.074405	1	38052	38052		79.596	20.917	1	1590500			2812	5840	1827	1848	2742	2742					0.10184084279910621
ALLAGLQEEP	10	Unmodified	_ALLAGLQEEP_					0	0	0			REV__ENSG00000170619|ENST00000305103|COMMD5	REV__ENSG00000170619|ENST00000305103|COMMD5	MULTI-SECPEP	A375_MHC_IP_R1	1	520.14013671875	2	520.784764	1039.55498	-0.56953	-0.00029661	0.64285	0.00033479	0.073318	3.8183E-05	520.7850691956564	52.516	0.30674	52.516	52.387	52.694	0					6	5	2	0	0	0	0.83355	1	18704	18704		8.1555	0.54658	1	1194600	+		2813	21009	1828	1849	2743	2743					0.03678019377821329
ALLAGPLRPA	10	Unmodified	_ALLAGPLRPA_					0	0	0		ENST00000522309.1_1_X:134185341-134186138:-|nuORF;ENSG00000203950|ENST00000370775|RTL8A;ENST00000520964.1_1_X:134185341-134186186:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	490.20806884765625	2	489.808377	977.6022	-0.42671	-0.00020901	-0.010891	-5.3343E-06	-0.43761	-0.00021434	489.8082404206002	65.612	0.45937	65.612	65.411	65.871	0					16	8	3	0	0	0	0.61429	1	23771	23771		30.637	7.4881	1	2087800			2814	13023	1829	1850	2744	2744					0.11250343439473909
ALLAGPLRPA	10	Unmodified	_ALLAGPLRPA_					0	0	0		ENST00000522309.1_1_X:134185341-134186138:-|nuORF;ENSG00000203950|ENST00000370775|RTL8A;ENST00000520964.1_1_X:134185341-134186186:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	489.6736755371094	2	489.808377	977.6022	-0.53362	-0.00026137	0.11582	5.6731E-05	-0.41779	-0.00020464	489.8082730233503	64.698	0.45802	65.438	65.259	65.717	0.74022					13	8	2	0	0	0	0.92957	1	24632	24632		3.2813	1.4371	1	1980400			2815	13023	1829	1850	2745	2745					0.11250343439473909
ALLAGSEYL	9	Unmodified	_ALLAGSEYL_					0	0	0		ENST00000462641.1_1_22:36907036-36908721:-|nuORF;nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D	ENST00000462641.1_1_22:36907036-36908721:-|nuORF	ENST00000462641.1_1_22:36907036-36908721:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	936.8792114257812	1	936.503674	935.496398	-0.0023241	-2.1765E-06	-0.030281	-2.8358E-05	-0.032605	-3.0535E-05	936.5035452220552	100.36	1.0643	100.36	99.975	101.04	0					41	20	3	0	0	0	0.0068722	2	36881	36881;37125		188.08	42.071	1	29814000			2816	2166	1830	1851	2746;2747	2746					0.026069628033155823
ALLAGSEYL	9	Unmodified	_ALLAGSEYL_					0	0	0		ENST00000462641.1_1_22:36907036-36908721:-|nuORF;nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D	ENST00000462641.1_1_22:36907036-36908721:-|nuORF	ENST00000462641.1_1_22:36907036-36908721:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	936.503674	935.496398	-0.0038303	-3.5871E-06	-0.47165	-0.00044171	-0.47549	-0.00044529	936.5031355900238	99.53	0.96663	100.29	99.912	100.88	0.76278	-0.031543	-0.00014778	NaN	188.08	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20907000			2817	2166	1830	1851							0.026069628033155823
ALLALLPEL	9	Unmodified	_ALLALLPEL_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MSMS	A375_MHC_IP_R2	2	952.7960815429688	1	952.607746	951.600469	-0.043261	-4.1211E-05	-0.1328	-0.00012651	-0.17606	-0.00016772	952.607276431495	134.58	0.15337	134.72	134.65	134.8	0.13901					4	2	2	0	0	0	0.27971	1	52935	52935		32.117	7.4431	1	2421200			2818	3998	1831	1852	2748	2748					0.12273289630843465
ALLALLPEL	9	Unmodified	_ALLALLPEL_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MATCH	A375_MHC_IP_R1	1		1	952.607746	951.600469	-0.23119	-0.00022023	-0.68236	-0.00065002	-0.91355	-0.00087025	952.607404708523	134.75	0.20364	134.75	134.62	134.83	0	0.014321	-0.00014452	NaN	32.117	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3156300			2819	3998	1831	1852							0.12273289630843465
ALLATLAAYL	10	Unmodified	_ALLATLAAYL_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4;REV__nc|ENSG00000127481|Q5T4S7-5|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	A375_MHC_IP_R1	1	510.70989990234375	2	510.310418	1018.60628	-0.30643	-0.00015637	0.22422	0.00011442	-0.082213	-4.1954E-05	510.31051804235886	111.18	1.5821	111.18	110.8	112.38	0					97	30	5	0	0	0	0.011733	2	40686	40686;41118		112.59	12.607	1	320950000	+		2820	18422;27212	1832	1853	2749;2750	2749					0.09772388142516775
ALLATLAAYL	10	Unmodified	_ALLATLAAYL_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4;REV__nc|ENSG00000127481|Q5T4S7-5|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	A375_MHC_IP_R1	1	510.71014404296875	2	510.310418	1018.60628	-0.30643	-0.00015637	0.22422	0.00011442	-0.082213	-4.1954E-05	510.31051804235886	111.18	1.5821	111.18	110.8	112.38	0					97	30	5	0	0	0	0.023713	1	40890	40890		85.272	0	1	320950000	+		2821	18422;27212	1832	1853	2751	2751					0.09772388142516775
ALLATLAAYL	10	Unmodified	_ALLATLAAYL_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4;REV__nc|ENSG00000127481|Q5T4S7-5|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	A375_MHC_IP_R2	2	510.71014404296875	2	510.310418	1018.60628	-0.59204	-0.00030212	-0.014117	-7.204E-06	-0.60615	-0.00030933	510.31039131892175	110.22	1.8926	110.96	110.63	112.52	0.73692					110	36	5	0	0	0	0.055257	1	41937	41937		74.423	16.701	1	236620000	+		2822	18422;27212	1832	1853	2752	2752					0.09772388142516775
ALLCALMPGL	10	Unmodified	_ALLCALMPGL_					0	0	0			REV__ENSG00000167434|ENST00000300900|CA4	REV__ENSG00000167434|ENST00000300900|CA4	MULTI-MSMS	A375_MHC_IP_R2	2	502.1822204589844	2	501.279749	1000.54494	-0.7459	-0.00037391	1.5242	0.00076407	0.77834	0.00039016	501.7824151159159	35.889	0.91615	36.652	36.081	36.997	0.76338					31	17	3	0	0	0	0.69947	1	13188	13188		12.532	12.532	1	4939100	+		2823	20758	1833	1854	2753	2753					0.04469416847246066
ALLCTGNTGS	10	Unmodified	_ALLCTGNTGS_					0	0	0			REV__ENSG00000185896|ENST00000332556|LAMP1	REV__ENSG00000185896|ENST00000332556|LAMP1	MULTI-MSMS	A375_MHC_IP_R2	2	469.1264953613281	2	468.726392	935.438231	-0.50698	-0.00023764	0.28064	0.00013154	-0.22634	-0.00010609	468.7268608265226	68.516	0.86152	69.251	68.918	69.779	0.73511					36	16	4	0	0	0	0.50967	1	25931	25931		27.629	0.74515	1	5518700	+		2824	21928	1834	1855	2754	2754					-0.032070421135813376
ALLDELQKV	9	Unmodified	_ALLDELQKV_					0	0	0		ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;nc|ENSG00000167716|Q562E7-2|WDR81;ENST00000495411.1_1_17:1634478-1636223:+|nuORF	ENSG00000167716|ENST00000409644|WDR81	ENSG00000167716|ENST00000409644|WDR81	MULTI-SECPEP	A375_MHC_IP_R1	1	515.2025146484375	2	514.802957	1027.59136	-0.63021	-0.00032444	0.50934	0.00026221	-0.12088	-6.2228E-05	514.8031183894801	90.064	0.75813	90.064	89.679	90.437	0					25	14	3	0	0	0	0.03341	1	33078	33078		93.166	27.931	1	2512800			2825	7216	1835	1856	2755	2755					0.0786689627452688
ALLDELQKV	9	Unmodified	_ALLDELQKV_					0	0	0		ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;nc|ENSG00000167716|Q562E7-2|WDR81;ENST00000495411.1_1_17:1634478-1636223:+|nuORF	ENSG00000167716|ENST00000409644|WDR81	ENSG00000167716|ENST00000409644|WDR81	MULTI-SECPEP	A375_MHC_IP_R2	2	515.20263671875	2	514.802957	1027.59136	-0.67994	-0.00035004	0.26719	0.00013755	-0.41275	-0.00021249	514.8030691812759	89.234	0.85769	89.966	89.533	90.391	0.7318					30	16	3	0	0	0	0.016309	1	33982	33982		103.35	18.081	1	2412800			2826	7216	1835	1856	2756	2756					0.0786689627452688
ALLDGRVQL	9	Unmodified	_ALLDGRVQL_					0	0	0		nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN;nc|ENSG00000188157|O00468-2|AGRN;ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN	nc|ENSG00000188157|O00468-4|AGRN	nc|ENSG00000188157|O00468-4|AGRN	MULTI-SECPEP	A375_MHC_IP_R1	1	493.1953430175781	2	492.795466	983.57638	-0.27472	-0.00013538	0.39741	0.00019584	0.12269	6.0462E-05	492.7958049787631	79.392	0.81802	79.392	79.061	79.879	0					43	15	4	0	0	0	0.019499	1	28983	28983		114.2	35.474	1	14234000			2827	14823	1836	1857	2757	2757					0.08393449197183145
ALLDGRVQL	9	Unmodified	_ALLDGRVQL_					0	0	0		nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN;nc|ENSG00000188157|O00468-2|AGRN;ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN	nc|ENSG00000188157|O00468-4|AGRN	nc|ENSG00000188157|O00468-4|AGRN	MULTI-SECPEP	A375_MHC_IP_R2	2	492.6682434082031	2	492.795466	983.57638	-0.45478	-0.00022412	0.51865	0.00025559	0.063866	3.1473E-05	492.7957550512578	78.517	0.66037	79.261	79.033	79.693	0.74474					22	12	2	0	0	0	0.090157	1	29864	29864		76.825	31.125	1	15508000			2828	14823	1836	1857	2758	2758					0.08393449197183145
ALLDKPPFL	9	Unmodified	_ALLDKPPFL_					0	0	0		ENST00000284384.6_1_17:64637544-64770230:+|nuORF;ENSG00000154229|ENST00000413366|PRKCA	ENST00000284384.6_1_17:64637544-64770230:+|nuORF	ENST00000284384.6_1_17:64637544-64770230:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	507.7052307128906	2	507.305136	1012.59572	-0.33471	-0.0001698	-0.47566	-0.0002413	-0.81037	-0.0004111	507.3049240858519	104.67	0.60783	104.67	104.49	105.1	0					18	11	2	0	0	0	0.082375	1	38455	38455		53.833	15.682	1	1423800			2829	6072	1837	1858	2759	2759					0.08992405488095301
ALLDKPPFL	9	Unmodified	_ALLDKPPFL_					0	0	0		ENST00000284384.6_1_17:64637544-64770230:+|nuORF;ENSG00000154229|ENST00000413366|PRKCA	ENST00000284384.6_1_17:64637544-64770230:+|nuORF	ENST00000284384.6_1_17:64637544-64770230:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	507.7049255371094	2	507.305136	1012.59572	-0.70113	-0.00035568	0.050585	2.5662E-05	-0.65054	-0.00033002	507.3052644642938	103.82	0.55852	104.59	104.24	104.8	0.76428					16	10	2	0	0	0	0.2002	1	39340	39340		37.974	7.7492	1	1314200			2830	6072	1837	1858	2760	2760					0.08992405488095301
ALLDLTDLV	9	Unmodified	_ALLDLTDLV_					0	0	0			REV__ENSG00000169136|ENST00000423777|ATF5	REV__ENSG00000169136|ENST00000423777|ATF5	MSMS	A375_MHC_IP_R2	2	486.63739013671875	2	486.784233	971.553913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.02	1	54.772	54.272	55.272	0.75105								0	0	0	0.1521	1	20393	20393		18.135	3.5533	1		+		2831	20909	1838	1859	2761	2761					0.06699805008906878
ALLDNMTESSE	11	Unmodified	_ALLDNMTESSE_					0	0	0			REV__ENST00000460049.6_1_14:24033375-24036327:-|nuORF;REV__ENSG00000213983|ENST00000397120|AP1G2	REV__ENST00000460049.6_1_14:24033375-24036327:-|nuORF	MSMS	A375_MHC_IP_R1	1	604.7924194335938	2	605.268818	1208.52308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.47	1	129.47	128.97	129.97	0								0	0	0	0.16203	1	49805	49805		8.1555	0.54658	1		+		2832	24959;22638	1839	1860	2762	2762					-0.07283761158328161
ALLDNNIGL	9	Unmodified	_ALLDNNIGL_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000574210.5_1_17:2594901-2597328:-|nuORF;ENST00000572014.1_1_17:2595653-2597426:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-MSMS	A375_MHC_IP_R1	1	472.1660461425781	2	471.766374	941.518196	-0.164	-7.7371E-05	-0.10416	-4.9137E-05	-0.26816	-0.00012651	471.76634092782206	108	1.5292	108	106.98	108.51	0					67	29	3	0	0	0	0.040308	1	39475	39475		68.081	9.4019	1	9881600			2833	4399	1840	1861	2763	2763					0.04509767551905952
ALLDNNIGL	9	Unmodified	_ALLDNNIGL_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000574210.5_1_17:2594901-2597328:-|nuORF;ENST00000572014.1_1_17:2595653-2597426:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-MSMS	A375_MHC_IP_R2	2	472.1659240722656	2	471.766374	941.518196	-0.65438	-0.00030871	-0.23921	-0.00011285	-0.89359	-0.00042156	471.76625932000155	107.05	1.4224	107.81	106.83	108.25	0.75436					62	27	3	0	0	0	0.01574	1	40349	40349		88.904	16.981	1	10036000			2834	4399	1840	1861	2764	2764					0.04509767551905952
ALLDNNIGL	9	Unmodified	_ALLDNNIGL_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000574210.5_1_17:2594901-2597328:-|nuORF;ENST00000572014.1_1_17:2595653-2597426:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-MSMS	A375_MHC_IP_R2	2	942.92724609375	1	942.525473	941.518196	-0.28231	-0.00026609	0.33413	0.00031493	0.051824	4.8845E-05	942.5259447537557	107.04	0.91352	107.8	107.39	108.3	0.75436					29	17	3	0	0	0	0.012843	1	40371	40371		92.653	30.081	1	6170500			2835	4399	1840	1861	2765	2765					0.04509767551905952
ALLDNNIGL	9	Unmodified	_ALLDNNIGL_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000574210.5_1_17:2594901-2597328:-|nuORF;ENST00000572014.1_1_17:2595653-2597426:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-MATCH	A375_MHC_IP_R1	1		1	942.525473	941.518196	0.25412	0.00023952	0.17615	0.00016602	0.43027	0.00040554	942.5257073408255	107.99	0.86523	107.99	107.44	108.31	0	0.098297	-6.5179E-05	NaN	92.653	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5833700			2836	4399	1840	1861							0.04509767551905952
ALLDQALSNA	10	Unmodified	_ALLDQALSNA_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1	ENSG00000127603|ENST00000564288|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	A375_MHC_IP_R2	2	508.6741027832031	2	508.274564	1014.53457	-0.66193	-0.00033644	0.38739	0.0001969	-0.27454	-0.00013954	508.2748159454004	89.148	0.90636	89.88	89.279	90.186	0.7318					26	17	2	0	0	0	0.011232	1	33942	33942		125.04	50.838	1	3718800			2837	4099	1841	1862	2766	2766					0.027888487179893673
ALLDQLHTL	9	Unmodified	_ALLDQLHTL_					0	0	0		nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENSG00000124151|ENST00000371998|NCOA3;nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	nc|ENSG00000124151|Q9Y6Q9-2|NCOA3	nc|ENSG00000124151|Q9Y6Q9-2|NCOA3	MULTI-SECPEP	A375_MHC_IP_R1	1	512.63720703125	2	512.295299	1022.57605	-0.40501	-0.00020749	0.16278	8.3394E-05	-0.24223	-0.00012409	512.2953255828738	93.558	0.56081	93.558	93.279	93.84	0					17	10	2	0	0	0	0.096726	1	34398	34398		61.357	21.4	1	1616800			2838	3873	1842	1863	2767	2767					0.06566029477335178
ALLDQLHTL	9	Unmodified	_ALLDQLHTL_					0	0	0		nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENSG00000124151|ENST00000371998|NCOA3;nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	nc|ENSG00000124151|Q9Y6Q9-2|NCOA3	nc|ENSG00000124151|Q9Y6Q9-2|NCOA3	MULTI-SECPEP	A375_MHC_IP_R2	2	512.6949462890625	2	512.295299	1022.57605	-0.6795	-0.0003481	0.19105	9.7875E-05	-0.48845	-0.00025023	512.2953073354398	92.831	0.55597	93.571	93.19	93.746	0.73902					14	10	2	0	0	0	0.096726	1	35307	35307		43.858	16.229	1	1807400			2839	3873	1842	1863	2768	2768					0.06566029477335178
ALLDRIVSV	9	Unmodified	_ALLDRIVSV_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-SECPEP	A375_MHC_IP_R1	1	492.69183349609375	2	493.305667	984.596781	-0.46608	-0.00022992	-0.21136	-0.00010426	-0.67743	-0.00033418	493.3055247467364	94.373	1.2197	94.373	93.991	95.211	0					69	23	5	0	0	0	0.11887	1	34682	34682		71.708	18.304	1	52835000			2840	6149	1843	1864	2769	2769					0.10386619857001733
ALLDRIVSV	9	Unmodified	_ALLDRIVSV_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-SECPEP	A375_MHC_IP_R2	2	493.6702575683594	2	493.305667	984.596781	-0.37619	-0.00018558	0.1328	6.5511E-05	-0.24339	-0.00012007	493.3057144366195	93.441	1.1162	94.185	93.702	94.818	0.74474					62	21	4	0	0	0	0.076731	1	35580	35580		80.676	14.219	1	53453000			2841	6149	1843	1864	2770	2770					0.10386619857001733
ALLDSAHLL	9	Unmodified	_ALLDSAHLL_					0	0	0		nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	MULTI-SECPEP	A375_MHC_IP_R1	1	477.17633056640625	2	476.776742	951.538931	-0.33347	-0.00015899	-0.011286	-5.3811E-06	-0.34475	-0.00016437	476.7766947228436	93.048	0.66311	93.048	92.821	93.484	0					20	12	2	0	0	0	0.061132	1	34220	34220		57.471	37.018	1	6475200			2842	1366	1844	1865	2771	2771					0.06122357931565148
ALLDSAHLL	9	Unmodified	_ALLDSAHLL_					0	0	0		nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	MSMS	A375_MHC_IP_R2	2	476.5986022949219	2	476.776742	951.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.044	1	92.783	92.283	93.283	0.73902								0	0	0	0.14905	1	35006	35006		23.148	0	1				2843	1366	1844	1865	2772	2772					0.06122357931565148
ALLDVTPNAV	10	Unmodified	_ALLDVTPNAV_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-SECPEP	A375_MHC_IP_R1	1	507.13623046875	2	506.787307	1011.56006	-0.3243	-0.00016435	-0.036538	-1.8517E-05	-0.36083	-0.00018287	506.78710353893536	97.934	0.35622	97.934	97.794	98.151	0					11	6	2	0	0	0	0.56504	1	35981	35981		34.402	7.5181	1	825160			2844	2483	1845	1866	2773	2773					0.05474323240434842
ALLDWVTSV	9	Unmodified	_ALLDWVTSV_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	A375_MHC_IP_R1	1	502.6767272949219	2	502.276575	1002.5386	-0.61575	-0.00030928	0.48744	0.00024483	-0.12831	-6.4445E-05	502.27682575529764	132.01	0.60291	132.01	131.78	132.38	0					15	11	2	0	0	0	0.034481	1	50905	50905		71.134	44.25	1	13674000			2845	4099;14587	1846	1867	2774	2774					0.037429382117238674
ALLDYIKRC	9	Unmodified	_ALLDYIKRC_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;ENST00000561268.5_1_15:44859616-44864898:-|nuORF	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-SECPEP	A375_MHC_IP_R2	2	366.0981750488281	3	365.539077	1093.5954	0.067189	2.456E-05	0.14342	5.2427E-05	0.21061	7.6987E-05	365.53915336929316	73.799	0.409	74.535	74.346	74.755	0.73581					10	7	2	0	0	0	0.77003	1	28054	28054		11.495	6.5977	1	529050			2846	2486	1847	1868	2775	2775					0.05234662496582132
ALLEEEEGV	9	Unmodified	_ALLEEEEGV_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-MSMS	A375_MHC_IP_R1	1	495.1641540527344	2	494.745305	987.476056	-0.77598	-0.00038391	0.43183	0.00021365	-0.34415	-0.00017026	494.74547468287193	68.083	0.60706	68.083	67.754	68.361	0					19	11	2	0	0	0	0.021919	1	24710	24710		81.864	37.457	1	4088000			2847	520	1848	1869	2776	2776					-0.018182526471264282
ALLEEEEGV	9	Unmodified	_ALLEEEEGV_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-MSMS	A375_MHC_IP_R2	2	495.1452941894531	2	494.745305	987.476056	-0.47956	-0.00023726	-0.07378	-3.6502E-05	-0.55334	-0.00027376	494.74518575388095	67.402	0.65994	68.139	67.801	68.461	0.73631					18	12	2	0	0	0	0.012712	2	25535	25499;25535		92.822	40.554	1	4455600			2848	520	1848	1869	2777;2778	2778					-0.018182526471264282
ALLEEEEGV	9	Unmodified	_ALLEEEEGV_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-MSMS	A375_MHC_IP_R2	2	989.4371337890625	1	988.483333	987.476056	0.0013361	1.3207E-06	-0.26114	-0.00025814	-0.25981	-0.00025681	988.4829144348041	67.407	0.60931	68.143	67.801	68.41	0.73631					24	11	3	0	0	0	0.067501	1	25585	25585		57.471	17.514	1	8699200			2849	520	1848	1869	2779	2779					-0.018182526471264282
ALLEEEEGV	9	Unmodified	_ALLEEEEGV_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-MATCH	A375_MHC_IP_R1	1		1	988.483333	987.476056	-0.21635	-0.00021386	0.4135	0.00040874	0.19715	0.00019488	988.4835991184009	68.083	0.60799	68.083	67.804	68.412	0	-0.030318	0.00026397	NaN	57.471	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8458700			2850	520	1848	1869							-0.018182526471264282
ALLEGLLEL	9	Unmodified	_ALLEGLLEL_					0	0	0		ENSG00000169217|ENST00000305596|CD2BP2	ENSG00000169217|ENST00000305596|CD2BP2	ENSG00000169217|ENST00000305596|CD2BP2	MULTI-SECPEP	A375_MHC_IP_R1	1	970.2092895507812	1	970.581925	969.574648	-0.14981	-0.0001454	-0.03527	-3.4232E-05	-0.18508	-0.00017963	970.5819956335597	134.09	0.45844	134.09	133.86	134.32	0					10	8	2	0	0	0	0.50702	1	51762	51762		32.305	5.4218	1	21014000			2851	7390	1849	1870	2780	2780					0.08864395388559387
ALLEGLLEL	9	Unmodified	_ALLEGLLEL_					0	0	0		ENSG00000169217|ENST00000305596|CD2BP2	ENSG00000169217|ENST00000305596|CD2BP2	ENSG00000169217|ENST00000305596|CD2BP2	MULTI-MATCH	A375_MHC_IP_R2	2		1	970.581925	969.574648	0.032728	3.1765E-05	-0.51789	-0.00050266	-0.48516	-0.00047089	970.5813776540834	133.92	0.30563	134.08	133.96	134.26	0.16487	-0.0041349	-0.00034647	NaN	32.305	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18187000			2852	7390	1849	1870							0.08864395388559387
ALLEGLTVV	9	Unmodified	_ALLEGLTVV_					0	0	0		ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-3|COPZ1;nc|ENSG00000111481|P61923-5|COPZ1;ENSG00000111481|ENST00000262061|COPZ1;nc|ENSG00000111481|P61923-4|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF	ENST00000551412.5_1_12:54718935-54741629:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	914.2355346679688	1	914.55571	913.548434	-0.32812	-0.00030008	1.2279	0.001123	0.8998	0.00082292	914.5560733880052	124.58	0.40224	124.91	124.65	125.05	0.32969					14	7	3	0	0	0	0.07754	1	48239	48239		74.423	10.186	1	28618000			2853	2995	1850	1871	2781	2781					0.08820126217085544
ALLELLERL	9	Unmodified	_ALLELLERL_					0	0	0		nc|ENSG00000113595|P36406-3|TRIM23;nc|ENSG00000113595|P36406-2|TRIM23;ENSG00000113595|ENST00000231524|TRIM23;ENST00000506400.1_1_5:64906824-64920129:-|nuORF	nc|ENSG00000113595|P36406-3|TRIM23	nc|ENSG00000113595|P36406-3|TRIM23	MULTI-MSMS	A375_MHC_IP_R2	2	535.7333374023438	2	535.334424	1068.6543	-0.87833	-0.0004702	-0.61664	-0.00033011	-1.495	-0.00080031	535.3340296345812	128.75	0.20084	128.99	128.86	129.06	0.23946					6	3	2	0	0	0	0.30259	1	50604	50604		38.615	17.025	1	5405600			2854	3166	1851	1872	2782	2782					0.12271462062562932
ALLELLHEL	9	Unmodified	_ALLELLHEL_					0	0	0		ENSG00000161904|ENST00000293760|LEMD2;ENST00000514636.1_1_6:33747875-33752267:-|nuORF	ENSG00000161904|ENST00000293760|LEMD2	ENSG00000161904|ENST00000293760|LEMD2	MULTI-SECPEP	A375_MHC_IP_R1	1	526.21337890625	2	525.813325	1049.6121	-0.028359	-1.4912E-05	-0.96014	-0.00050486	-0.9885	-0.00051977	525.812733512967	126.87	0.45636	126.87	126.71	127.16	0					17	8	3	0	0	0	0.011207	1	48516	48516		125.62	57.544	1	12413000			2855	6490	1852	1873	2783	2783					0.08927486654192762
ALLELLHEL	9	Unmodified	_ALLELLHEL_					0	0	0		ENSG00000161904|ENST00000293760|LEMD2;ENST00000514636.1_1_6:33747875-33752267:-|nuORF	ENSG00000161904|ENST00000293760|LEMD2	ENSG00000161904|ENST00000293760|LEMD2	MULTI-SECPEP	A375_MHC_IP_R2	2	526.2140502929688	2	525.813325	1049.6121	-0.43107	-0.00022666	1.1771	0.00061892	0.746	0.00039226	525.8139086558394	126.46	0.19921	126.76	126.63	126.83	0.2951					8	3	3	0	0	0	0.033126	1	49478	49478		97.075	43.499	1	31272000			2856	6490	1852	1873	2784	2784					0.08927486654192762
ALLEQVNAL	9	Unmodified	_ALLEQVNAL_					0	0	0		nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3;ENST00000479399.5_1_9:34616009-34616228:-|nuORF	nc|ENSG00000137100|O75935-2|DCTN3	nc|ENSG00000137100|O75935-2|DCTN3	MULTI-MSMS	A375_MHC_IP_R1	1	486.1815185546875	2	485.782025	969.549496	-0.17915	-8.703E-05	-0.3033	-0.00014734	-0.48245	-0.00023437	485.78191261610476	97.742	0.76224	97.742	97.338	98.101	0					21	14	2	0	0	0	0.030038	1	35872	35872		74.929	31.071	1	4231500			2857	4859	1853	1874	2785	2785					0.0635034058598194
ALLEQVNAL	9	Unmodified	_ALLEQVNAL_					0	0	0		nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3;ENST00000479399.5_1_9:34616009-34616228:-|nuORF	nc|ENSG00000137100|O75935-2|DCTN3	nc|ENSG00000137100|O75935-2|DCTN3	MULTI-SECPEP	A375_MHC_IP_R2	2	486.1817321777344	2	485.782025	969.549496	-0.76806	-0.00037311	-0.06585	-3.1989E-05	-0.83391	-0.0004051	485.7819623879829	96.876	0.60598	97.632	97.368	97.974	0.75586					25	11	3	0	0	0	0.059859	1	36758	36758		81.89	15.434	1	5343300			2858	4859	1853	1874	2786	2786					0.0635034058598194
ALLERGYSL	9	Unmodified	_ALLERGYSL_					0	0	0		nc|ENSG00000182199|P34897-3|SHMT2;nc|ENSG00000182199|P34897-2|SHMT2;ENSG00000182199|ENST00000328923|SHMT2;ENST00000557433.5_1_12:57625333-57628141:+|nuORF;ENST00000553837.5_1_12:57625333-57628141:+|nuORF;ENST00000555774.5_1_12:57624752-57628141:+|nuORF;ENST00000556825.5_1_12:57623475-57628141:+|nuORF;ENST00000557348.5_1_12:57623887-57628141:+|nuORF;ENST00000554467.5_1_12:57627324-57627898:+|nuORF	nc|ENSG00000182199|P34897-3|SHMT2	nc|ENSG00000182199|P34897-3|SHMT2	MULTI-SECPEP	A375_MHC_IP_R1	1	511.6871032714844	2	511.287474	1020.5604	-0.56676	-0.00028978	-0.26754	-0.00013679	-0.83429	-0.00042656	511.28731304450383	65.42	0.56094	65.42	65.105	65.666	0					17	10	2	0	0	0	0.048303	1	23655	23655		74.2	11.627	1	4792500			2859	8388	1854	1875	2787	2787					0.05093742960275449
ALLERGYSL	9	Unmodified	_ALLERGYSL_					0	0	0		nc|ENSG00000182199|P34897-3|SHMT2;nc|ENSG00000182199|P34897-2|SHMT2;ENSG00000182199|ENST00000328923|SHMT2;ENST00000557433.5_1_12:57625333-57628141:+|nuORF;ENST00000553837.5_1_12:57625333-57628141:+|nuORF;ENST00000555774.5_1_12:57624752-57628141:+|nuORF;ENST00000556825.5_1_12:57623475-57628141:+|nuORF;ENST00000557348.5_1_12:57623887-57628141:+|nuORF;ENST00000554467.5_1_12:57627324-57627898:+|nuORF	nc|ENSG00000182199|P34897-3|SHMT2	nc|ENSG00000182199|P34897-3|SHMT2	MULTI-SECPEP	A375_MHC_IP_R2	2	511.6867980957031	2	511.287474	1020.5604	-0.69182	-0.00035372	-1.0063	-0.0005145	-1.6981	-0.00086822	511.2872182468736	64.536	0.66199	65.276	64.902	65.564	0.74022					29	12	3	0	0	0	0.062502	1	24455	24455		74.2	20.367	1	5732100			2860	8388	1854	1875	2788	2788					0.05093742960275449
ALLESSLRQA	10	Unmodified	_ALLESSLRQA_					0	0	0		ENSG00000110092|ENST00000227507|CCND1	ENSG00000110092|ENST00000227507|CCND1	ENSG00000110092|ENST00000227507|CCND1	MULTI-SECPEP	A375_MHC_IP_R1	1	544.7080688476562	2	544.308938	1086.60332	-0.60049	-0.00032685	0.21117	0.00011494	-0.38932	-0.00021191	544.3090653642856	50.382	0.51128	50.382	50.101	50.613	0					17	9	2	0	0	0	0.081287	1	17842	17842		80.676	18.103	1	7303600			2861	2920	1855	1876	2789	2789					0.06348513017701407
ALLESSLRQA	10	Unmodified	_ALLESSLRQA_					0	0	0		ENSG00000110092|ENST00000227507|CCND1	ENSG00000110092|ENST00000227507|CCND1	ENSG00000110092|ENST00000227507|CCND1	MULTI-SECPEP	A375_MHC_IP_R2	2	544.708740234375	2	544.308938	1086.60332	-1.1012	-0.00059938	-0.019815	-1.0786E-05	-1.121	-0.00061016	544.3089940918745	49.51	0.76188	50.267	49.995	50.757	0.75737					33	14	3	0	0	0	0.027638	1	18596	18596		97.741	35.168	1	7994800			2862	2920	1855	1876	2790	2790					0.06348513017701407
ALLESTANV	9	Unmodified	_ALLESTANV_					0	0	0		ENSG00000152413|ENST00000334082|HOMER1	ENSG00000152413|ENST00000334082|HOMER1	ENSG00000152413|ENST00000334082|HOMER1	MULTI-SECPEP	A375_MHC_IP_R1	1	459.650390625	2	459.250557	916.486562	-0.2964	-0.00013612	0.45558	0.00020923	0.15918	7.3103E-05	459.2505978765768	64.719	0.86368	64.719	64.191	65.055	0					25	16	3	0	0	0	0.43707	1	23447	23447		10.824	2.9138	1	1808600			2863	5963	1856	1877	2791	2791					0.024977747979392007
ALLESTANV	9	Unmodified	_ALLESTANV_					0	0	0		ENSG00000152413|ENST00000334082|HOMER1	ENSG00000152413|ENST00000334082|HOMER1	ENSG00000152413|ENST00000334082|HOMER1	MULTI-SECPEP	A375_MHC_IP_R2	2	459.650146484375	2	459.250557	916.486562	-0.30398	-0.0001396	-0.1236	-5.6764E-05	-0.42758	-0.00019637	459.2505070791327	63.92	0.456	64.661	64.394	64.85	0.74022					15	8	2	0	0	0	0.16229	1	24238	24238		32.305	6.9062	1	2027000			2864	5963	1856	1877	2792	2792					0.024977747979392007
ALLETNPYL	9	Unmodified	_ALLETNPYL_					0	0	0		ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1	ENSG00000104853|ENST00000337392|CLPTM1	ENSG00000104853|ENST00000337392|CLPTM1	MULTI-MSMS	A375_MHC_IP_R1	1	517.6815795898438	2	517.281857	1032.54916	-0.49247	-0.00025475	0.22842	0.00011816	-0.26405	-0.00013659	517.281960325155	103.16	0.7136	103.16	102.86	103.57	0					27	13	3	0	0	0	0.010171	1	37873	37873		96.111	59.984	1	5833400			2865	2542	1857	1878	2793	2793					0.034189208661246084
ALLETNPYL	9	Unmodified	_ALLETNPYL_					0	0	0		ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1	ENSG00000104853|ENST00000337392|CLPTM1	ENSG00000104853|ENST00000337392|CLPTM1	MULTI-MSMS	A375_MHC_IP_R2	2	517.6818237304688	2	517.281857	1032.54916	-0.7398	-0.00038268	0.31718	0.00016407	-0.42262	-0.00021861	517.2820415128027	102.34	0.76109	103.1	102.72	103.48	0.76428					35	14	3	0	0	0	0.018261	2	38730	38730;38788		85.642	42.681	1	7272400			2866	2542	1857	1878	2794;2795	2794					0.034189208661246084
ALLFDELRA	9	Unmodified	_ALLFDELRA_					0	0	0		ENSG00000276747|ENST00000619609|PADI6	ENSG00000276747|ENST00000619609|PADI6	ENSG00000276747|ENST00000619609|PADI6	MULTI-SECPEP	A375_MHC_IP_R2	2	524.695068359375	2	524.295299	1046.57605	-0.78863	-0.00041347	-0.67331	-0.00035301	-1.4619	-0.00076649	524.2951522295704	71.47	0.60801	72.204	71.806	72.414	0.73421					17	11	2	0	0	0	0.3213	1	27121	27121		37.974	16.227	1	2299700			2867	10023	1858	1879	2796	2796					0.054620294773030764
ALLFDRFV	8	Unmodified	_ALLFDRFV_					0	0	0			REV__ENSG00000105738|ENST00000222345|SIPA1L3;REV__ENSG00000116991|ENST00000674635|SIPA1L2;REV__nc|ENSG00000197555|O43166-3|SIPA1L1	REV__ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-SECPEP	A375_MHC_IP_R1	1	490.67657470703125	2	490.781828	979.549102	-0.13188	-6.4724E-05	-0.78551	-0.00038551	-0.91739	-0.00045024	490.78165622419044	68.857	0.65922	68.857	68.717	69.377	0					15	12	2	0	0	0	0.95327	1	25118	25118		6.3541	1.1234	1	1207500	+		2868	17408;17986;22297	1859	1880	2797	2797					0.05850965656804874
ALLFMHVY	8	Oxidation (M)	_ALLFM(Oxidation (M))HVY_		ALLFM(1)HVY		ALLFM(52)HVY	0	0	1			REV__MC3R|p.F213L|1|0.08|ENSG00000124089|chr20:56249482-56249482|T/G|missense_variant	REV__MC3R|p.F213L|1|0.08|ENSG00000124089|chr20:56249482-56249482|T/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	505.67059326171875	2	505.262413	1008.51027	-0.72514	-0.00036638	-0.51243	-0.00025891	-1.2376	-0.0006253	505.26211216865363	74.251	1.1715	74.989	74.449	75.621	0.73752					64	22	4	0	0	0	0.41926	1	28165	28165		52.334	52.334	1	45506000	+		2869	21879	1860	1881	2798	2798		486			0.0063591703077463535
ALLFRLWRRLW	11	Unmodified	_ALLFRLWRRLW_					0	0	0			REV__ENST00000341418.9_1_15:68114320-68117168:+|nuORF	REV__ENST00000341418.9_1_15:68114320-68117168:+|nuORF	MSMS	A375_MHC_IP_R2	2	765.8628540039062	2	765.46443	1528.91431	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.57	1	142.6	142.1	143.1	0.030731								0	0	0	0.1636	1	55734	55734		0	0	1		+		2870	23732	1861	1882	2799	2799					0.17100672184028554
ALLGILQHV	9	Unmodified	_ALLGILQHV_					0	0	0		ENSG00000015676|ENST00000355451|NUDCD3;ENST00000464812.1_1_7:44525191-44530199:-|nuORF	ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	MULTI-MSMS	A375_MHC_IP_R1	1	482.702880859375	2	482.302927	962.591301	-0.27224	-0.0001313	0.16021	7.7269E-05	-0.11203	-5.4034E-05	482.3029305805898	105.03	0.60846	105.03	104.74	105.35	0					26	11	3	0	0	0	0.026461	1	38527	38527		77.984	20.513	1	3834400			2871	1036	1862	1883	2800	2800					0.10850941065177722
ALLGILQHV	9	Unmodified	_ALLGILQHV_					0	0	0		ENSG00000015676|ENST00000355451|NUDCD3;ENST00000464812.1_1_7:44525191-44530199:-|nuORF	ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	MULTI-SECPEP	A375_MHC_IP_R2	2	482.7026062011719	2	482.302927	962.591301	-0.53577	-0.0002584	0.20213	9.7487E-05	-0.33364	-0.00016092	482.30297273279336	103.97	0.60646	104.73	104.35	104.95	0.76416					27	11	3	0	0	0	0.089948	1	39318	39318		70.716	17.14	1	5132000			2872	1036	1862	1883	2801	2801					0.10850941065177722
ALLGKIEKV	9	Unmodified	_ALLGKIEKV_					0	0	0		nc|ENSG00000143641|Q10471-2|GALNT2;ENSG00000143641|ENST00000366672|GALNT2	nc|ENSG00000143641|Q10471-2|GALNT2	nc|ENSG00000143641|Q10471-2|GALNT2	MULTI-SECPEP	A375_MHC_IP_R1	1	486.2184143066406	2	485.81841	969.622267	0.31728	0.00015414	-0.70097	-0.00034055	-0.38369	-0.00018641	485.8180073811583	44.97	0.90873	44.97	44.676	45.585	0					51	17	5	0	0	0	0.011308	1	15669	15669		128.93	39.532	1	73143000			2873	5420	1863	1884	2802	2802					0.13624094379417784
ALLGKIEKV	9	Unmodified	_ALLGKIEKV_					0	0	0		nc|ENSG00000143641|Q10471-2|GALNT2;ENSG00000143641|ENST00000366672|GALNT2	nc|ENSG00000143641|Q10471-2|GALNT2	nc|ENSG00000143641|Q10471-2|GALNT2	MULTI-SECPEP	A375_MHC_IP_R2	2	486.21807861328125	2	485.81841	969.622267	-0.40151	-0.00019506	-0.10342	-5.0243E-05	-0.50493	-0.0002453	485.81828890976493	43.938	0.85915	44.707	44.43	45.289	0.7691					44	16	4	0	0	0	0.016541	1	16346	16346		107.1	27.503	1	59355000			2874	5420	1863	1884	2803	2803					0.13624094379417784
ALLGKPVNAV	10	Unmodified	_ALLGKPVNAV_					0	0	0			REV__ATP12A|p.E349K|1|0.37|ENSG00000075673|chr13:24691227-24691227|G/A|missense_variant	REV__ATP12A|p.E349K|1|0.37|ENSG00000075673|chr13:24691227-24691227|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	491.6787414550781	2	491.30821	980.601866	-0.2631	-0.00012926	-0.57463	-0.00028232	-0.83773	-0.00041158	491.3075830107944	101.92	1.3156	101.92	101.65	102.96	0					62	25	5	0	0	0	0.76414	1	37592	37592		14.838	0.93222	1	22437000	+		2875	15474	1864	1885	2804	2804					0.11078923719605882
ALLGRLAEL	9	Unmodified	_ALLGRLAEL_					0	0	0		nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	MULTI-SECPEP	A375_MHC_IP_R1	1	478.6999816894531	2	478.300384	954.586216	-0.27325	-0.0001307	-0.18054	-8.6351E-05	-0.45379	-0.00021705	478.300205078594	93.048	0.61137	93.048	92.718	93.329	0					24	11	3	0	0	0	0.30925	1	34171	34171		49.554	49.554	1	4381100			2876	4020	1865	1886	2805	2805					0.10710637202555517
ALLGRLAEL	9	Unmodified	_ALLGRLAEL_					0	0	0		nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	MULTI-SECPEP	A375_MHC_IP_R2	2	478.1739501953125	2	478.300384	954.586216	-0.46255	-0.00022124	0.39868	0.00019069	-0.063869	-3.0549E-05	478.3004960685715	92.066	0.80801	92.805	92.483	93.291	0.73902					25	15	3	0	0	0	0.20451	1	35001	35001		49.554	3.5333	1	3368700			2877	4020	1865	1886	2806	2806					0.10710637202555517
ALLGSMTVV	9	Unmodified	_ALLGSMTVV_					0	0	0		ENSG00000001461|ENST00000374399|NIPAL3;nc|ENSG00000001461|Q6P499-2|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	MULTI-SECPEP	A375_MHC_IP_R1	1	891.2805786132812	1	890.501566	889.494289	0.04194	3.7347E-05	0.22624	0.00020146	0.26818	0.00023881	890.5016427973302	108.59	0.96331	108.59	108.31	109.27	0					29	18	2	0	0	0	0.39388	1	40012	40012		32.305	0	1	5188300			2878	844	1866	1887	2807	2807					0.045122107938937006
ALLGTIISA	9	Unmodified	_ALLGTIISA_					0	0	0		ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	MULTI-SECPEP	A375_MHC_IP_R2	2	858.0379638671875	1	858.529495	857.522219	-0.40791	-0.0003502	0.78816	0.00067666	0.38025	0.00032646	858.5298886282266	113.04	0.45992	113.74	113.62	114.08	0.70985					13	8	2	0	0	0	0.011031	1	42663	42663		133.7	16.103	1	9400900			2879	6374	1867	1888	2808	2808					0.08775857045611701
ALLGTIISA	9	Unmodified	_ALLGTIISA_					0	0	0		ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	858.529495	857.522219	0.21448	0.00018414	0.52869	0.00045389	0.74317	0.00063803	858.5297085889214	114.05	0.36	114.05	113.85	114.21	0	0.1526	-8.3184E-05	NaN	133.7	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5180700			2880	6374	1867	1888							0.08775857045611701
ALLGYLQEV	9	Unmodified	_ALLGYLQEV_					0	0	0		nc|ENSG00000155256|Q5T4F4-4|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27	nc|ENSG00000155256|Q5T4F4-4|ZFYVE27	nc|ENSG00000155256|Q5T4F4-4|ZFYVE27	MULTI-MSMS	A375_MHC_IP_R2	2	503.68353271484375	2	503.2844	1004.55425	-0.66842	-0.00033641	0.32231	0.00016221	-0.34611	-0.00017419	503.2844765386096	121.94	0.50647	122.38	122.08	122.58	0.44488					19	9	3	0	0	0	0.0014061	1	46638	46638		149.99	53.71	1	25303000			2881	6134	1868	1889	2809	2809					0.0521522472874949
ALLITAAEPI	10	Unmodified	_ALLITAAEPI_					0	0	0			REV__ENSG00000134548|ENST00000256969|SPX	REV__ENSG00000134548|ENST00000256969|SPX	MULTI-SECPEP	A375_MHC_IP_R1	1	506.70782470703125	2	506.307875	1010.6012	-0.28701	-0.00014531	0.052995	2.6832E-05	-0.23401	-0.00011848	506.30784095302556	97.4	0.45358	97.4	97.137	97.59	0					11	8	2	0	0	0	0.69172	1	35821	35821		32.305	3.2239	1	1207900	+		2882	18787	1869	1890	2810	2810					0.0963208427989457
ALLITAAEPI	10	Unmodified	_ALLITAAEPI_					0	0	0			REV__ENSG00000134548|ENST00000256969|SPX	REV__ENSG00000134548|ENST00000256969|SPX	MULTI-MATCH	A375_MHC_IP_R2	2		2	506.307875	1010.6012	-0.7878	-0.00039887	-0.228	-0.00011544	-1.0158	-0.00051431	506.3075438093054	96.466	0.55791	97.221	96.861	97.419	0.75586	-0.089358	-0.0002201	NaN	32.305	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	830860	+		2883	18787	1869	1890							0.0963208427989457
ALLITKPN	8	Unmodified	_ALLITKPN_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q831Sfs*11|1|0.38|ENSG00000125107|chr16:58555897-58555898|-/A|frameshift_variant	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	A375_MHC_IP_R2	2	434.93853759765625	2	435.276378	868.538203	-0.41099	-0.00017889	0.092307	4.0179E-05	-0.31868	-0.00013871	435.2765329516405	35.952	0.25545	36.716	36.638	36.894	0.76338					6	4	2	0	0	0	0.972	1	13079	13079		5.7604	0	1	717910			2884	3941	1870	1891	2811	2811					0.09867563282523406
ALLKDSIVQL	10	Unmodified	_ALLKDSIVQL_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENST00000592194.1_1_17:66508623-66511738:+|nuORF;PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant;PRKAR1A|p.A48Dfs*82|1|0.42|ENSG00000108946|chr17:68515541-68515542|-/AT|frameshift_variant	nc|ENSG00000108946|P10644-2|PRKAR1A;PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-SECPEP	A375_MHC_IP_R1	1	550.6924438476562	2	550.339707	1098.66486	-0.76858	-0.00042298	-0.05239	-2.8832E-05	-0.82097	-0.00045181	550.339608238761	90.992	0.50709	90.992	90.742	91.249	0					14	9	2	0	0	0	0.37302	1	33451	33451		55.503	11.73	1	2014900			2885	2847;15226	1871	1892	2812	2812					0.1194744471699778
ALLKDSIVQL	10	Unmodified	_ALLKDSIVQL_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENST00000592194.1_1_17:66508623-66511738:+|nuORF;PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant;PRKAR1A|p.A48Dfs*82|1|0.42|ENSG00000108946|chr17:68515541-68515542|-/AT|frameshift_variant	nc|ENSG00000108946|P10644-2|PRKAR1A;PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-SECPEP	A375_MHC_IP_R2	2	550.7392578125	2	550.339707	1098.66486	-0.68393	-0.0003764	0.26235	0.00014438	-0.42159	-0.00023202	550.3396701684875	90.135	0.35617	90.867	90.648	91.004	0.7318					13	6	3	0	0	0	0.50381	1	34305	34305		47.594	16.326	1	1911700			2886	2847;15226	1871	1892	2813	2813					0.1194744471699778
ALLKGLAAV	9	Unmodified	_ALLKGLAAV_					0	0	0		ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000170185|Q8NB14-2|USP38;USP35|p.S563*|1|0.13|ENSG00000118369|chr11:78209543-78209543|C/-|frameshift_variant;nc|ENSG00000118369|Q9P2H5-2|USP35;ENSG00000118369|ENST00000529308|USP35	ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000118369|Q9P2H5-2|USP35	ENSG00000170185|ENST00000307017|USP38	MULTI-SECPEP	A375_MHC_IP_R1	1	428.6867370605469	2	428.286746	854.558939	-0.14053	-6.0189E-05	0.2503	0.0001072	0.10977	4.7011E-05	428.28679045206025	73.871	0.60744	73.871	73.539	74.146	0					22	11	3	0	0	0	0.4261	1	26886	26886		37.974	1.9298	1	4217300			2887	7479;3538	1872	1893	2814	2814					0.12584153662169228
ALLKGLAAV	9	Unmodified	_ALLKGLAAV_					0	0	0		ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000170185|Q8NB14-2|USP38;USP35|p.S563*|1|0.13|ENSG00000118369|chr11:78209543-78209543|C/-|frameshift_variant;nc|ENSG00000118369|Q9P2H5-2|USP35;ENSG00000118369|ENST00000529308|USP35	ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000118369|Q9P2H5-2|USP35	ENSG00000170185|ENST00000307017|USP38	MULTI-SECPEP	A375_MHC_IP_R2	2	428.6864013671875	2	428.286746	854.558939	-0.26217	-0.00011228	-0.17317	-7.4166E-05	-0.43534	-0.00018645	428.2866445667117	72.778	0.5589	73.514	73.226	73.785	0.73541					22	10	3	0	0	0	0.28475	1	27619	27619		48.346	7.8973	1	3560800			2888	7479;3538	1872	1893	2815	2815					0.12584153662169228
ALLKQIQEA	9	Unmodified	_ALLKQIQEA_					0	0	0		ENST00000484795.5_1_12:6761826-6762560:-|nuORF;nc|ENSG00000111653|Q9UNL4-8|ING4;ENST00000488381.5_1_12:6760363-6764813:-|nuORF;nc|ENSG00000111653|Q9UNL4-3|ING4;nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000111653|Q9UNL4-7|ING4;nc|ENSG00000111653|Q9UNL4-5|ING4;nc|ENSG00000111653|Q9UNL4-6|ING4;ENSG00000111653|ENST00000341550|ING4;nc|ENSG00000111653|Q9UNL4|ING4	ENST00000484795.5_1_12:6761826-6762560:-|nuORF	ENST00000484795.5_1_12:6761826-6762560:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.70281982421875	2	507.303124	1012.5917	-0.356	-0.0001806	-0.43737	-0.00022188	-0.79337	-0.00040248	507.3028427404862	47.442	0.66009	47.442	47.159	47.819	0					20	12	2	0	0	0	0.011107	1	16691	16691		134.3	62.373	1	22151000			2889	3008	1873	1894	2816	2816					0.08590315994376851
ALLKQIQEA	9	Unmodified	_ALLKQIQEA_					0	0	0		ENST00000484795.5_1_12:6761826-6762560:-|nuORF;nc|ENSG00000111653|Q9UNL4-8|ING4;ENST00000488381.5_1_12:6760363-6764813:-|nuORF;nc|ENSG00000111653|Q9UNL4-3|ING4;nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000111653|Q9UNL4-7|ING4;nc|ENSG00000111653|Q9UNL4-5|ING4;nc|ENSG00000111653|Q9UNL4-6|ING4;ENSG00000111653|ENST00000341550|ING4;nc|ENSG00000111653|Q9UNL4|ING4	ENST00000484795.5_1_12:6761826-6762560:-|nuORF	ENST00000484795.5_1_12:6761826-6762560:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	507.70257568359375	2	507.303124	1012.5917	-0.59145	-0.00030004	-0.30035	-0.00015237	-0.8918	-0.00045241	507.30291800976835	46.591	0.66123	47.356	47.058	47.719	0.76519					22	12	2	0	0	0	0.011107	1	17446	17446		134.3	62.373	1	20736000			2890	3008	1873	1894	2817	2817					0.08590315994376851
ALLKVNQEL	9	Unmodified	_ALLKVNQEL_					0	0	0		ENSG00000100347|ENST00000350028|SAMM50;ENST00000474323.5_1_22:44371844-44392260:+|nuORF	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-SECPEP	A375_MHC_IP_R1	1	514.7107543945312	2	514.310949	1026.60735	-0.55261	-0.00028421	-0.2003	-0.00010302	-0.75291	-0.00038723	514.3108093014338	61.201	0.50961	61.201	60.922	61.432	0					12	9	2	0	0	0	0.3213	1	22081	22081		46.021	9.8939	1	3442400			2891	2164	1874	1895	2818	2818					0.09510602511409161
ALLKVNQEL	9	Unmodified	_ALLKVNQEL_					0	0	0		ENSG00000100347|ENST00000350028|SAMM50;ENST00000474323.5_1_22:44371844-44392260:+|nuORF	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-MSMS	A375_MHC_IP_R2	2	514.7107543945312	2	514.310949	1026.60735	-1.0757	-0.00055322	-0.66914	-0.00034415	-1.7448	-0.00089737	514.3109960181487	60.28	0.61247	61.025	60.801	61.414	0.74504					23	11	3	0	0	0	0.009271	1	22807	22807		103.75	14.845	1	4611500			2892	2164	1874	1895	2819	2819					0.09510602511409161
ALLKYIETL	9	Unmodified	_ALLKYIETL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	A375_MHC_IP_R1	1	532.7236328125	2	532.323525	1062.6325	-0.58492	-0.00031137	0.33159	0.00017651	-0.25333	-0.00013485	532.3236359513146	102.94	0.66018	102.94	102.56	103.22	0					25	12	3	0	0	0	0.025235	1	37813	37813		96.111	0	1	4678400			2893	4716	1875	1896	2820	2820					0.10368657313983931
ALLKYNEAVKL	11	Unmodified	_ALLKYNEAVKL_					0	0	0		nc|ENSG00000175556|Q496Y0-3|LONRF3;nc|ENSG00000175556|Q496Y0-2|LONRF3;ENSG00000175556|ENST00000371628|LONRF3	nc|ENSG00000175556|Q496Y0-3|LONRF3	nc|ENSG00000175556|Q496Y0-3|LONRF3	MULTI-MSMS	A375_MHC_IP_R1	1	421.6552429199219	3	421.255334	1260.74417	-0.024898	-1.0489E-05	0.20853	8.7845E-05	0.18363	7.7357E-05	421.25538207634116	76.294	0.55515	76.294	76.017	76.572	0					25	10	4	0	0	0	0.60387	1	27800	27800		23.016	1.7743	1	6404400			2894	7969	1876	1897	2821	2821					0.12423091671121256
ALLKYNEAVKL	11	Unmodified	_ALLKYNEAVKL_					0	0	0		nc|ENSG00000175556|Q496Y0-3|LONRF3;nc|ENSG00000175556|Q496Y0-2|LONRF3;ENSG00000175556|ENST00000371628|LONRF3	nc|ENSG00000175556|Q496Y0-3|LONRF3	nc|ENSG00000175556|Q496Y0-3|LONRF3	MULTI-MSMS	A375_MHC_IP_R2	2	421.6552734375	3	421.255334	1260.74417	-0.13209	-5.5644E-05	0.073984	3.1166E-05	-0.058106	-2.4477E-05	421.25530337142374	75.414	0.56141	76.155	75.875	76.436	0.74052					21	10	3	0	0	0	0.61555	1	28621	28621		22.109	0.8675	1	6980900			2895	7969	1876	1897	2822	2822					0.12423091671121256
ALLLDTAPRLQ	11	Unmodified	_ALLLDTAPRLQ_					0	0	0			REV__nc|ENSG00000198825|Q9Y2H2-3|INPP5F	REV__nc|ENSG00000198825|Q9Y2H2-3|INPP5F	MULTI-MSMS	A375_MHC_IP_R1	1	404.64349365234375	3	404.243317	1209.70812	-0.50729	-0.00020507	0.72017	0.00029112	0.21289	8.6057E-05	404.2435737305884	58.345	0.35484	58.345	58.126	58.481	0					14	6	3	0	0	0	0.73154	1	20976	20976		7.4291	0.80562	1	2067600	+		2896	22425	1877	1898	2823	2823					0.11165634494273036
ALLLLLPPL	9	Unmodified	_ALLLLLPPL_					0	0	0		nc|ENSG00000101955|P78539-4|SRPX;nc|ENSG00000101955|P78539-3|SRPX;nc|ENSG00000101955|P78539-5|SRPX;ENSG00000101955|ENST00000378533|SRPX	REV__ENST00000554631.2_1_14:95624158-95624227:+|nuORF	REV__ENST00000554631.2_1_14:95624158-95624227:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	482.23553466796875	2	481.836071	961.65759	-0.68868	-0.00033183	-0.036217	-1.7451E-05	-0.72489	-0.00034928	481.83599488152964	138.23	0.20282	138.23	138.15	138.36	0					5	3	2	0	0	0	0.4045	1	53207	53207		20.871	0	1	907190			2897	2338	1878	1899	2824	2824					0.17522756907226267
ALLLQKLQL	9	Unmodified	_ALLLQKLQL_					0	0	0		nc|ENSG00000114487|Q86VD1-2|MORC1;ENSG00000114487|ENST00000232603|MORC1;chr3:108959120-108963414|153|11.49|0.53|4.44|-|0|MORC1,MORC1|1	nc|ENSG00000114487|Q86VD1-2|MORC1	nc|ENSG00000114487|Q86VD1-2|MORC1	MULTI-SECPEP	A375_MHC_IP_R2	2	520.7473754882812	2	520.347335	1038.68012	-0.57673	-0.0003001	0.18044	9.3889E-05	-0.39629	-0.00020621	520.3473912388818	109.01	0.51203	109.76	109.52	110.03	0.74683					20	9	3	0	0	0	0.55359	1	41172	41172		21.747	0	1	1752500			2898	3224	1879	1900	2825	2825					0.1623235630486306
ALLLTKKYY	9	Unmodified	_ALLLTKKYY_					0	0	0			REV__ENSG00000121957|ENST00000264126|GPSM2	REV__ENSG00000121957|ENST00000264126|GPSM2	MULTI-SECPEP	A375_MHC_IP_R1	1	371.308349609375	3	371.561987	1111.66413	0.32702	0.00012151	0.21454	7.9715E-05	0.54156	0.00020122	371.5618655260869	64.039	0.71199	64.039	63.58	64.292	0					18	13	2	0	0	0	0.81645	1	23054	23054		0	0	1	1092700	+		2899	18181	1880	1901	2826	2826					0.11276650067952687
ALLNAILHSA	10	Unmodified	_ALLNAILHSA_					0	0	0		ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-SECPEP	A375_MHC_IP_R1	1	512.2032470703125	2	511.803291	1021.59203	-0.36676	-0.00018771	0.098767	5.0549E-05	-0.268	-0.00013716	511.80332089545226	97.144	0.45527	97.144	96.883	97.338	0					15	8	2	0	0	0	0.15002	1	35724	35724		66.457	16.524	1	1694900			2900	4293	1881	1902	2827	2827					0.08209735714240196
ALLNEAKEV	9	Unmodified	_ALLNEAKEV_					0	0	0		ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR;nc|ENSG00000164327|Q6R327-4|RICTOR;ENST00000513566.1_1_5:38981926-39074494:-|nuORF;ENST00000510711.5_1_5:38971963-39074479:-|nuORF	ENSG00000164327|ENST00000357387|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	MULTI-MSMS	A375_MHC_IP_R2	2	494.1789245605469	2	493.779482	985.544411	-0.41629	-0.00020556	-0.30295	-0.00014959	-0.71924	-0.00035514	493.7793239434296	42.846	0.55672	43.619	43.369	43.926	0.7724					19	10	3	0	0	0	0.04699	1	15971	15971		65.474	10.7	1	2718200			2901	6825	1882	1903	2828	2828					0.05106036723384477
ALLNEEDVIY	10	Unmodified	_ALLNEEDVIY_					0	0	0		ENSG00000115604|ENST00000233957|IL18R1	ENSG00000115604|ENST00000233957|IL18R1	ENSG00000115604|ENST00000233957|IL18R1	MULTI-SECPEP	A375_MHC_IP_R2	2	393.9037780761719	3	393.536166	1177.58667	-0.51108	-0.00020113	0.37168	0.00014627	-0.13941	-5.4861E-05	393.53628505452014	52.007	0.55952	52.759	52.524	53.083	0.75225					12	10	2	0	0	0	0.94163	1	19514	19514		1.7423	1.7423	1	942630			2902	3326	1883	1904	2829	2829					0.004979673411071417
ALLNGEYLL	9	Unmodified	_ALLNGEYLL_					0	0	0		ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	MULTI-MSMS	A375_MHC_IP_R1	1	1005.5843505859375	1	1005.56152	1004.55425	-0.0026374	-2.652E-06	-0.49851	-0.00050128	-0.50115	-0.00050393	1005.5608656907842	124.88	0.35147	124.88	124.75	125.1	0					11	6	3	0	0	0	0.004328	1	47337	47337		136.33	25.046	1	157400000			2903	1373	1884	1905	2830	2830					0.0521522472874949
ALLNGEYLL	9	Unmodified	_ALLNGEYLL_					0	0	0		ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	MULTI-MSMS	A375_MHC_IP_R2	2	1005.48828125	1	1005.56152	1004.55425	0.038211	3.8424E-05	-0.011064	-1.1126E-05	0.027147	2.7298E-05	1005.5618415913381	124.28	0.3546	124.61	124.44	124.8	0.32969					14	6	3	0	0	0	0.004328	1	48019	48019		136.33	17.439	1	70325000			2904	1373	1884	1905	2831	2831					0.0521522472874949
ALLNIKVKL	9	Unmodified	_ALLNIKVKL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;CON__P05784;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF;ENST00000397031.2_1_2:182825941-182826409:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-SECPEP	A375_MHC_IP_R2	2	506.7497253417969	2	506.349877	1010.6852	-0.71642	-0.00036276	0.21296	0.00010783	-0.50347	-0.00025493	506.34994834388255	75.911	0.50755	76.652	76.385	76.893	0.74052					14	9	2	0	0	0	0.53748	1	28836	28836		24.021	1.2843	1	1452200			2905	2963	1885	1906	2832	2832					0.18028660167453836
ALLNILSEV	9	Unmodified	_ALLNILSEV_					0	0	0		ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	MULTI-SECPEP	A375_MHC_IP_R1	1	486.6918640136719	2	486.292225	970.569897	-0.47433	-0.00023066	-0.29219	-0.00014209	-0.76652	-0.00037275	486.29203186784224	131.15	0.55537	131.15	131.02	131.58	0					21	10	3	0	0	0	0.0091148	1	50565	50565		141.83	45.542	1	20014000			2906	1123	1886	1907	2833	2833					0.08343511245811897
ALLNILSEV	9	Unmodified	_ALLNILSEV_					0	0	0		ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	MULTI-SECPEP	A375_MHC_IP_R2	2	486.69171142578125	2	486.292225	970.569897	-0.59996	-0.00029175	-0.059624	-2.8995E-05	-0.65958	-0.00032075	486.2921330493917	130.92	0.45648	131.14	130.96	131.41	0.2142					13	8	3	0	0	0	0.010923	1	51507	51507		128.37	32.081	1	24533000			2907	1123	1886	1907	2834	2834					0.08343511245811897
ALLPELREV	9	Unmodified	_ALLPELREV_					0	0	0		CHRNB1|p.S438F|1|0.42|ENSG00000170175|chr17:7455889-7455889|C/T|missense_variant;nc|ENSG00000170175|P11230-2|CHRNB1;ENSG00000170175|ENST00000306071|CHRNB1	CHRNB1|p.S438F|1|0.42|ENSG00000170175|chr17:7455889-7455889|C/T|missense_variant	CHRNB1|p.S438F|1|0.42|ENSG00000170175|chr17:7455889-7455889|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	520.7105712890625	2	520.310949	1038.60735	-0.52543	-0.00027339	-0.21814	-0.0001135	-0.74357	-0.00038689	520.3108549780054	87.735	0.81443	87.735	87.34	88.154	0					30	15	3	0	0	0	0.27064	1	32157	32157		32.786	3.7041	1	8464700			2908	517	1887	1908	2835	2835					0.08958602511415847
ALLPELREV	9	Unmodified	_ALLPELREV_					0	0	0		CHRNB1|p.S438F|1|0.42|ENSG00000170175|chr17:7455889-7455889|C/T|missense_variant;nc|ENSG00000170175|P11230-2|CHRNB1;ENSG00000170175|ENST00000306071|CHRNB1	CHRNB1|p.S438F|1|0.42|ENSG00000170175|chr17:7455889-7455889|C/T|missense_variant	CHRNB1|p.S438F|1|0.42|ENSG00000170175|chr17:7455889-7455889|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	519.985595703125	2	520.310949	1038.60735	-0.5193	-0.0002702	0.14851	7.7272E-05	-0.37078	-0.00019292	520.3109515309515	86.801	0.7625	87.534	87.203	87.966	0.733					36	14	3	0	0	0	0.56537	1	33063	33063		22.736	12.662	1	11063000			2909	517	1887	1908	2836	2836					0.08958602511415847
ALLPHLYTL	9	Unmodified	_ALLPHLYTL_					0	0	0		ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	MULTI-SECPEP	A375_MHC_IP_R1	1	521.2100830078125	2	520.810585	1039.60662	-0.40593	-0.00021141	-0.43068	-0.0002243	-0.83662	-0.00043572	520.8102993749675	105.44	0.55781	105.44	105.1	105.65	0					16	10	2	0	0	0	0.3607	1	38707	38707		26.884	0	1	4137700			2910	7591	1888	1909	2837	2837					0.08839807862386806
ALLPHLYTL	9	Unmodified	_ALLPHLYTL_					0	0	0		ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	MULTI-SECPEP	A375_MHC_IP_R2	2	521.2095947265625	2	520.810585	1039.60662	-0.57125	-0.00029751	-0.25241	-0.00013146	-0.82366	-0.00042897	520.8103756887182	104.42	0.51038	105.18	104.85	105.36	0.76308					25	9	4	0	0	0	0.0062982	1	39494	39494		131.3	81.629	1	6401100			2911	7591	1888	1909	2838	2838					0.08839807862386806
ALLPIFFGA	9	Unmodified	_ALLPIFFGA_					0	0	0		nc|ENSG00000101294|Q8TCT9-5|HM13;nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9-5|HM13	nc|ENSG00000101294|Q8TCT9-5|HM13	MULTI-MSMS	A375_MHC_IP_R2	2	475.1807861328125	2	474.781296	947.54804	-0.4145	-0.0001968	-0.028461	-1.3513E-05	-0.44296	-0.00021031	474.78118358302385	135.29	0.45964	135.43	135.15	135.61	0.13901					19	8	4	0	0	0	0.011986	1	53201	53201		93.763	48.013	1	14318000			2912	14514	1889	1910	2839	2839					0.07216751287899115
ALLPPLLRW	9	Unmodified	_ALLPPLLRW_					0	0	0			REV__ENST00000378623.5_1_11:46896536-46896644:-|nuORF	REV__ENST00000378623.5_1_11:46896536-46896644:-|nuORF	MSMS	A375_MHC_IP_R2	2	539.6669921875	2	539.84222	1077.66989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.714	1	76.454	75.954	76.954	0.74052								0	0	0	0.15486	1	28741	28741		5.2307	3.1709	1		+		2913	24183	1890	1911	2840	2840					0.1341579337024541
ALLPPPPQML	10	Unmodified	_ALLPPPPQML_					0	0	0		ENSG00000143294|ENST00000271526|PRCC	ENSG00000143294|ENST00000271526|PRCC	ENSG00000143294|ENST00000271526|PRCC	MULTI-SECPEP	A375_MHC_IP_R2	2	360.2389831542969	3	359.543939	1075.60999	-0.52456	-0.0001886	1.9056	0.00068514	1.381	0.00049654	359.54486897636025	38.685	0.45807	39.46	39.25	39.708	0.77451					11	8	2	0	0	0	0.91556	1	14340	14340		8.9762	3.5735	1	1225300			2914	5364	1891	1912	2841	2841					0.0752073464473142
ALLPQASNV	9	Unmodified	_ALLPQASNV_					0	0	0		ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MULTI-SECPEP	A375_MHC_IP_R1	1	457.1610412597656	2	456.761092	911.507631	-0.092278	-4.2149E-05	0.074371	3.397E-05	-0.017908	-8.1795E-06	456.76102004284456	71.338	0.51033	71.338	71.005	71.516	0					13	9	2	0	0	0	0.11436	1	25927	25927		41.84	9.5341	1	2525200			2915	7476	1892	1913	2842	2842					0.04833784897471105
ALLPQASNV	9	Unmodified	_ALLPQASNV_					0	0	0		ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MULTI-SECPEP	A375_MHC_IP_R2	2	457.16082763671875	2	456.761092	911.507631	-0.23214	-0.00010603	-0.040406	-1.8456E-05	-0.27254	-0.00012449	456.7609861128258	70.491	0.50672	71.225	70.946	71.453	0.73421					16	9	2	0	0	0	0.10103	1	26728	26728		62.573	26.446	1	4186000			2916	7476	1892	1913	2843	2843					0.04833784897471105
ALLPQNHKL	9	Unmodified	_ALLPQNHKL_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	A375_MHC_IP_R1	1	517.7109375	2	517.311284	1032.60801	-0.45901	-0.00023745	-0.13851	-7.1653E-05	-0.59752	-0.0003091	517.3111584923445	33.676	0.40306	33.676	33.445	33.848	0					18	7	3	0	0	0	0.07754	1	11011	11011		74.423	16.951	1	10355000			2917	3986	1893	1914	2844	2844					0.09301441951129163
ALLPQNHKL	9	Unmodified	_ALLPQNHKL_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	A375_MHC_IP_R2	2	517.7105712890625	2	517.311284	1032.60801	-0.80689	-0.00041741	0.064901	3.3574E-05	-0.74199	-0.00038384	517.3112170213719	32.76	0.40554	33.497	33.317	33.722	0.73691					14	7	3	0	0	0	0.05755	1	11694	11694		81.613	26.84	1	7447500			2918	3986	1893	1914	2845	2845					0.09301441951129163
ALLPRLQA	8	Unmodified	_ALLPRLQA_					0	0	0			REV__ENST00000586439.1_1_19:36604659-36605969:-|nuORF	REV__ENST00000586439.1_1_19:36604659-36605969:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	441.6819763183594	2	441.281995	880.549437	-0.038917	-1.7174E-05	0.25047	0.00011053	0.21155	9.3355E-05	441.28207974244634	70.771	0.76719	70.771	70.392	71.159	0					31	14	3	0	0	0	0.55372	1	25647	25647		48.346	6.2513	1	10873000	+		2919	26388	1894	1915	2846	2846					0.10438385376653514
ALLPRLQA	8	Unmodified	_ALLPRLQA_					0	0	0			REV__ENST00000586439.1_1_19:36604659-36605969:-|nuORF	REV__ENST00000586439.1_1_19:36604659-36605969:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	441.681884765625	2	441.281995	880.549437	-0.2595	-0.00011451	0.10562	4.6608E-05	-0.15388	-6.7905E-05	441.2819998838767	69.728	0.76254	70.462	70.132	70.895	0.73421					32	14	3	0	0	0	0.40488	1	26390	26390		57.471	9.1255	1	16664000	+		2920	26388	1894	1915	2847	2847					0.10438385376653514
ALLPSSPTL	9	Unmodified	_ALLPSSPTL_					0	0	0		nc|ENSG00000185024|Q92994-9|BRF1;nc|ENSG00000185024|Q92994-3|BRF1;nc|ENSG00000185024|Q92994-7|BRF1;nc|ENSG00000185024|Q92994-8|BRF1;nc|ENSG00000185024|Q92994-5|BRF1;ENSG00000185024|ENST00000547530|BRF1;ENST00000547374.5_1_14:105676890-105677657:-|nuORF;ENST00000546997.1_1_14:105676890-105678659:-|nuORF	nc|ENSG00000185024|Q92994-9|BRF1	nc|ENSG00000185024|Q92994-9|BRF1	MULTI-SECPEP	A375_MHC_IP_R1	1	450.1661376953125	2	449.765843	897.517133	-0.091715	-4.125E-05	0.50755	0.00022828	0.41583	0.00018703	449.7659316605761	98.175	0.55891	98.175	97.896	98.455	0					22	10	3	0	0	0	0.011229	1	36067	36067		123.1	21.374	1	2512300			2921	8632	1895	1916	2848	2848					0.06427553183004875
ALLPSSPTL	9	Unmodified	_ALLPSSPTL_					0	0	0		nc|ENSG00000185024|Q92994-9|BRF1;nc|ENSG00000185024|Q92994-3|BRF1;nc|ENSG00000185024|Q92994-7|BRF1;nc|ENSG00000185024|Q92994-8|BRF1;nc|ENSG00000185024|Q92994-5|BRF1;ENSG00000185024|ENST00000547530|BRF1;ENST00000547374.5_1_14:105676890-105677657:-|nuORF;ENST00000546997.1_1_14:105676890-105678659:-|nuORF	nc|ENSG00000185024|Q92994-9|BRF1	nc|ENSG00000185024|Q92994-9|BRF1	MULTI-SECPEP	A375_MHC_IP_R2	2	450.1657409667969	2	449.765843	897.517133	-0.46461	-0.00020896	0.44614	0.00020066	-0.01847	-8.3073E-06	449.7658846825501	97.417	0.76286	98.172	97.822	98.585	0.75587					22	14	2	0	0	0	0.0090634	1	36950	36950		154.46	44.834	1	3152800			2922	8632	1895	1916	2849	2849					0.06427553183004875
ALLPVDIFL	9	Unmodified	_ALLPVDIFL_					0	0	0		nc|ENSG00000168216|Q9NUN5-2|LMBRD1;ENSG00000168216|ENST00000649934|LMBRD1	nc|ENSG00000168216|Q9NUN5-2|LMBRD1	nc|ENSG00000168216|Q9NUN5-2|LMBRD1	MULTI-SECPEP	A375_MHC_IP_R1	1	1000.9027099609375	1	1000.60775	999.600469	-0.10677	-0.00010683	0.41922	0.00041947	0.31245	0.00031264	1000.6079135126114	137.39	0.25792	137.39	137.28	137.54	0					8	4	3	0	0	0	0.054184	1	52880	52880		81.864	31.009	1	3377200			2923	7275	1896	1917	2850	2850					0.10065289630847474
ALLPVDIFL	9	Unmodified	_ALLPVDIFL_					0	0	0		nc|ENSG00000168216|Q9NUN5-2|LMBRD1;ENSG00000168216|ENST00000649934|LMBRD1	nc|ENSG00000168216|Q9NUN5-2|LMBRD1	nc|ENSG00000168216|Q9NUN5-2|LMBRD1	MULTI-MATCH	A375_MHC_IP_R2	2		1	1000.60775	999.600469	0.19898	0.0001991	-0.042297	-4.2322E-05	0.15668	0.00015677	1000.6080034048356	137.28	0.3597	137.36	137.2	137.56	0.083954	-0.016513	-0.0003486	NaN	81.864	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1989300			2924	7275	1896	1917							0.10065289630847474
ALLQDLHKA	9	Unmodified	_ALLQDLHKA_					0	0	0		ENST00000544613.5_2_16:30770684-30771731:-|nuORF;ENST00000546006.5_1_16:30770549-30771803:-|nuORF;ENST00000537986.1_1_16:30768799-30771803:-|nuORF;ENST00000544487.5_1_16:30770684-30771803:-|nuORF;nc|ENSG00000196118|A1A4V9-4|CFAP119;nc|ENSG00000196118|A1A4V9-2|CFAP119;ENSG00000196118|ENST00000543610|CFAP119	ENST00000544613.5_2_16:30770684-30771731:-|nuORF	ENST00000544613.5_2_16:30770684-30771731:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	505.1956787109375	2	504.795466	1007.57638	-0.22749	-0.00011484	-0.10323	-5.2108E-05	-0.33072	-0.00016695	504.795478875533	37.526	0.46038	37.526	37.301	37.761	0					20	8	3	0	0	0	0.27114	1	12658	12658		53.404	19.002	1	9417700			2925	8998	1897	1918	2851	2851					0.07289449197162412
ALLQDLHKA	9	Unmodified	_ALLQDLHKA_					0	0	0		ENST00000544613.5_2_16:30770684-30771731:-|nuORF;ENST00000546006.5_1_16:30770549-30771803:-|nuORF;ENST00000537986.1_1_16:30768799-30771803:-|nuORF;ENST00000544487.5_1_16:30770684-30771803:-|nuORF;nc|ENSG00000196118|A1A4V9-4|CFAP119;nc|ENSG00000196118|A1A4V9-2|CFAP119;ENSG00000196118|ENST00000543610|CFAP119	ENST00000544613.5_2_16:30770684-30771731:-|nuORF	ENST00000544613.5_2_16:30770684-30771731:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	505.1947937011719	2	504.795466	1007.57638	-1.0304	-0.00052014	0.27088	0.00013674	-0.75951	-0.0003834	504.7956682455259	36.561	0.55908	37.331	37.056	37.615	0.7709					21	10	3	0	0	0	0.20451	1	13321	13321		57.722	9.9733	1	7077100			2926	8998	1897	1918	2852	2852					0.07289449197162412
ALLQIQQGL	9	Unmodified	_ALLQIQQGL_					0	0	0		nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;ENSG00000160803|ENST00000368309|UBQLN4	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	MULTI-MSMS	A375_MHC_IP_R1	1	492.6975402832031	2	492.297842	982.581131	-0.27043	-0.00013313	0.15872	7.8138E-05	-0.11171	-5.4996E-05	492.2978288901415	101.49	0.45573	101.49	101.24	101.7	0					19	8	3	0	0	0	0.0093345	1	37317	37317		104.8	33.666	1	1821000			2927	4634	1898	1919	2853	2853					0.08914333339930636
ALLQIQQGL	9	Unmodified	_ALLQIQQGL_					0	0	0		nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;ENSG00000160803|ENST00000368309|UBQLN4	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	nc|ENSG00000135018|Q9UMX0-3|UBQLN1	MULTI-MSMS	A375_MHC_IP_R2	2	492.69732666015625	2	492.297842	982.581131	-0.34484	-0.00016977	-0.14715	-7.2441E-05	-0.49199	-0.00024221	492.29785931826854	100.67	0.51315	101.43	101.13	101.65	0.76278					19	9	3	0	0	0	0.0098824	1	38150	38150		117.6	35.986	1	1898500			2928	4634	1898	1919	2854	2854					0.08914333339930636
ALLQQIPD	8	Unmodified	_ALLQQIPD_					0	0	0		nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1;ATP8A2|p.C240Hfs*17|1|0.43|ENSG00000132932|chr13:25541985-25542016|TGTGAAGGGCCCAACCGCCACCTCTATGACTT/-|frameshift_variant;nc|ENSG00000132932|Q9NTI2-3|ATP8A2;nc|ENSG00000132932|Q9NTI2-1|ATP8A2;ENSG00000132932|ENST00000381655|ATP8A2	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;ATP8A2|p.C240Hfs*17|1|0.43|ENSG00000132932|chr13:25541985-25542016|TGTGAAGGGCCCAACCGCCACCTCTATGACTT/-|frameshift_variant;nc|ENSG00000132932|Q9NTI2-3|ATP8A2	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MSMS	A375_MHC_IP_R2	2	449.28570556640625	2	449.255643	896.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.583	1	33.32	32.82	33.82	0.73692								0	0	0	0.16876	1	11611	11611		8.5933	1.304	1				2929	3898;4464;211	1899	1920	2855	2855					0.04434382523174918
ALLQQVHSA	9	Unmodified	_ALLQQVHSA_					0	0	0		PROSER1|p.S909L|1|0.26|ENSG00000120685|chr13:39011474-39011474|G/A|missense_variant;ENST00000484434.3_1_13:39585504-39597381:-|nuORF;nc|ENSG00000120685|Q86XN7-2|PROSER1;ENSG00000120685|ENST00000352251|PROSER1	PROSER1|p.S909L|1|0.26|ENSG00000120685|chr13:39011474-39011474|G/A|missense_variant	PROSER1|p.S909L|1|0.26|ENSG00000120685|chr13:39011474-39011474|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	484.6732177734375	2	483.771991	965.529429	-0.57665	-0.00027896	-0.062013	-3E-05	-0.63866	-0.00030896	483.771913407785	36.716	0.55622	36.716	36.489	37.045	0					22	10	3	0	0	0	0.026268	1	12345	12345		78.149	13.913	1	7157700			2930	3675	1900	1921	2856	2856					0.045285896460427466
ALLQQVHSA	9	Unmodified	_ALLQQVHSA_					0	0	0		PROSER1|p.S909L|1|0.26|ENSG00000120685|chr13:39011474-39011474|G/A|missense_variant;ENST00000484434.3_1_13:39585504-39597381:-|nuORF;nc|ENSG00000120685|Q86XN7-2|PROSER1;ENSG00000120685|ENST00000352251|PROSER1	PROSER1|p.S909L|1|0.26|ENSG00000120685|chr13:39011474-39011474|G/A|missense_variant	PROSER1|p.S909L|1|0.26|ENSG00000120685|chr13:39011474-39011474|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	484.6731262207031	2	483.771991	965.529429	-0.74294	-0.00035941	0.1598	7.7308E-05	-0.58314	-0.0002821	483.77204040993496	35.857	0.71444	36.62	36.435	37.15	0.76338					23	13	3	0	0	0	0.01574	1	13038	13038		88.904	14.481	1	7998900			2931	3675	1900	1921	2857	2857					0.045285896460427466
ALLQRLEAL	9	Unmodified	_ALLQRLEAL_					0	0	0		ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	MULTI-SECPEP	A375_MHC_IP_R1	1	513.454345703125	2	513.818941	1025.62333	-0.57747	-0.00029672	-0.16803	-8.6338E-05	-0.7455	-0.00038305	513.8188103170638	94.196	0.50491	94.196	93.941	94.446	0					15	9	2	0	0	0	0.11711	1	34646	34646		69.105	16.837	1	1684200			2932	2215	1901	1922	2858	2858					0.11154308748336916
ALLQRLEAL	9	Unmodified	_ALLQRLEAL_					0	0	0		ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	MULTI-SECPEP	A375_MHC_IP_R2	2	514.2195434570312	2	513.818941	1025.62333	-0.65969	-0.00033896	1.0821	0.00055603	0.42245	0.00021706	513.8192641737581	93.225	0.45801	93.964	93.696	94.154	0.73902					17	8	3	0	0	0	0.34746	1	35443	35443		38.176	7.539	1	1211600			2933	2215	1901	1922	2859	2859					0.11154308748336916
ALLQSDVRL	9	Unmodified	_ALLQSDVRL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9797058105469	2	507.800749	1013.58694	-0.65376	-0.00033198	-0.19663	-9.9851E-05	-0.8504	-0.00043183	507.8005745111246	69.536	0.86339	70.27	69.879	70.743	0.7342					43	16	4	0	0	0	0.03341	1	26354	26354		93.166	27.931	1	16246000			2934	14788	1902	1923	2860	2860					0.08069431851606623
ALLRARVP	8	Unmodified	_ALLRARVP_					0	0	0		ENST00000446587.2_1_12:66524292-66524445:-|nuORF	ENST00000446587.2_1_12:66524292-66524445:-|nuORF	ENST00000446587.2_1_12:66524292-66524445:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	448.6954040527344	2	448.295436	894.57632	-0.2838	-0.00012723	0.22445	0.00010062	-0.059346	-2.6605E-05	448.29556320693246	39.567	0.3029	39.567	39.441	39.744	0					9	5	2	0	0	0	0.972	1	13570	13570		2.5775	0	1	4127200			2935	12037	1903	1924	2861	2861					0.12481493987831982
ALLRDLNKA	9	Unmodified	_ALLRDLNKA_					0	0	0		ENSG00000129933|ENST00000262815|MAU2;nc|ENSG00000129933|Q9Y6X3-2|MAU2;nc|ENSG00000129933|Q9Y6X3-3|MAU2;ENST00000587709.5_1_19:19459550-19466588:+|nuORF;ENST00000499453.2_1_19:19464952-19466588:+|nuORF;ENST00000262816.11_1_19:19463093-19466588:+|nuORF	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-SECPEP	A375_MHC_IP_R2	2	507.7084655761719	2	507.308741	1012.60293	-1.2486	-0.00063341	0.058595	2.9726E-05	-1.19	-0.00060369	507.30884329014907	33.862	0.35415	34.614	34.399	34.753	0.75225					14	6	3	0	0	0	0.47674	1	12184	12184		29.841	3.5724	1	2102700			2936	4214	1904	1925	2862	2862					0.09713138088511641
ALLREWTTY	9	Unmodified	_ALLREWTTY_					0	0	0		nc|ENSG00000196730|P53355-4|DAPK1;ENSG00000196730|ENST00000408954|DAPK1;nc|ENSG00000196730|P53355-3|DAPK1;DAPK1|p.P1369S|1|0.71|ENSG00000196730|chr9:87707176-87707176|C/T|missense_variant	nc|ENSG00000196730|P53355-4|DAPK1	nc|ENSG00000196730|P53355-4|DAPK1	MULTI-SECPEP	A375_MHC_IP_R2	2	577.2052612304688	2	576.806031	1151.59751	-0.091673	-5.2878E-05	-0.33872	-0.00019538	-0.4304	-0.00024826	576.8053144612555	46.174	0.55537	46.939	46.552	47.108	0.76519					19	10	3	0	0	0	0.62767	1	17297	17297		23.148	15.859	1	2973300			2937	9079	1905	1926	2863	2863					0.027774145060448063
ALLRHVLVDA	10	Unmodified	_ALLRHVLVDA_					0	0	0			REV__ENST00000433430.5_1_2:233196570-233200992:+|nuORF	REV__ENST00000433430.5_1_2:233196570-233200992:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	369.4446105957031	3	369.560869	1105.66078	-0.14783	-5.4632E-05	-0.042586	-1.5738E-05	-0.19042	-7.037E-05	369.5608611361226	25.29	0.3576	25.934	25.619	25.976	0.64368					8	6	2	0	0	0	0.94651	1	8406	8406		1.7423	0	1	3223100	+		2938	19429	1906	1927	2864	2864					0.11217400013947554
ALLRLITS	8	Unmodified	_ALLRLITS_					0	0	0			REV__HUWE1|p.S3306Afs*6|1|0.29|ENSG00000086758|chrX:53549078-53549079|-/ACGC|frameshift_variant	REV__HUWE1|p.S3306Afs*6|1|0.29|ENSG00000086758|chrX:53549078-53549079|-/ACGC|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	443.1565246582031	2	443.789653	885.564752	-0.36342	-0.00016128	0.0034168	1.5163E-06	-0.36	-0.00015977	443.78956488152534	75.743	0.56055	76.483	76.232	76.792	0.74052					13	10	2	0	0	0	0.8957	1	28818	28818		10.824	3.5347	1	684930	+		2939	16859	1907	1928	2865	2865					0.11739252173845216
ALLRQLPV	8	Unmodified	_ALLRQLPV_					0	0	0			REV__ENSG00000162639|ENST00000651461|HENMT1	REV__ENSG00000162639|ENST00000651461|HENMT1	MULTI-SECPEP	A375_MHC_IP_R2	2	455.6976623535156	2	455.297645	908.580737	-0.049068	-2.2341E-05	-0.30623	-0.00013942	-0.35529	-0.00016176	455.29736421692724	85.515	0.55936	86.251	85.882	86.441	0.73601					21	10	3	0	0	0	0.64068	1	32491	32491		40.449	0	1	2937200	+		2940	20282	1908	1929	2866	2866					0.12278958410752239
ALLRVTPF	8	Unmodified	_ALLRVTPF_					0	0	0		ENST00000354833.7_1_5:70213930-70214023:+|nuORF;ENSG00000175768|ENST00000321301|TOMM5	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	459.1839294433594	2	458.78437	915.554188	-0.14916	-6.8433E-05	0.089966	4.1275E-05	-0.059195	-2.7158E-05	458.78426506771683	89.044	0.60904	89.044	88.867	89.476	0					20	11	3	0	0	0	0.4193	1	32711	32711		58.679	22.635	1	3262900			2941	7981	1909	1930	2867	2867					0.09303269519421065
ALLRVTPF	8	Unmodified	_ALLRVTPF_					0	0	0		ENST00000354833.7_1_5:70213930-70214023:+|nuORF;ENSG00000175768|ENST00000321301|TOMM5	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	459.18402099609375	2	458.78437	915.554188	-0.28669	-0.00013153	0.12471	5.7216E-05	-0.16198	-7.4314E-05	458.78426290460345	88.108	0.55717	88.84	88.621	89.178	0.7318					16	10	2	0	0	0	0.4193	1	33513	33513		49.933	13.889	1	3183700			2942	7981	1909	1930	2868	2868					0.09303269519421065
ALLRVTPFI	9	Unmodified	_ALLRVTPFI_					0	0	0		ENST00000354833.7_1_5:70213930-70214023:+|nuORF;ENSG00000175768|ENST00000321301|TOMM5	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	515.725830078125	2	515.326402	1028.63825	-0.3075	-0.00015846	-0.26568	-0.00013691	-0.57318	-0.00029538	515.3262884986722	109.41	0.51067	109.41	109.17	109.68	0					16	9	2	0	0	0	0.19747	1	40149	40149		38.176	12.776	1	1553600			2943	7981	1910	1931	2869	2869					0.1250780061632213
ALLRVTPFI	9	Unmodified	_ALLRVTPFI_					0	0	0		ENST00000354833.7_1_5:70213930-70214023:+|nuORF;ENSG00000175768|ENST00000321301|TOMM5	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	515.7257690429688	2	515.326402	1028.63825	-0.7459	-0.00038438	-0.033877	-1.7458E-05	-0.77977	-0.00040184	515.3263649648139	108.36	0.4586	109.11	108.92	109.37	0.75436					18	8	3	0	0	0	0.17338	1	40942	40942		39.95	14.55	1	1416900			2944	7981	1910	1931	2870	2870					0.1250780061632213
ALLSALQRS	9	Unmodified	_ALLSALQRS_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;ENST00000529821.5_1_11:6587803-6593213:+|nuORF;ENST00000530197.5_1_11:6587352-6593213:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1;ENST00000530197.5_1_11:6587352-6593213:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	MSMS	A375_MHC_IP_R2	2	479.6844177246094	2	479.787641	957.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.12	1	129.36	128.86	129.86	0.23946								0	0	0	0.12568	1	50738	50738		34.102	9.4286	1				2945	8235;13147	1911	1932	2871	2871					0.08025162680144149
ALLSAVTRL	9	Unmodified	_ALLSAVTRL_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-3|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-SECPEP	A375_MHC_IP_R1	1	472.7002868652344	2	472.300384	942.586216	-0.51972	-0.00024546	-0.051665	-2.4402E-05	-0.57138	-0.00026986	472.30031717396184	83.861	0.86014	83.861	83.432	84.292	0					30	16	3	0	0	0	0.048303	1	30659	30659		83.429	16.972	1	8830600			2946	1184;1400	1912	1933	2872	2872					0.112626372025602
ALLSAVTRL	9	Unmodified	_ALLSAVTRL_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-3|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-SECPEP	A375_MHC_IP_R2	2	472.6765441894531	2	472.300384	942.586216	-0.58312	-0.00027541	-0.1178	-5.5637E-05	-0.70092	-0.00033105	472.30028211178166	82.68	0.70689	83.423	83.144	83.851	0.74293					28	13	4	0	0	0	0.27114	1	31425	31425		45.74	1.9675	1	7444900			2947	1184;1400	1912	1933	2873	2873					0.112626372025602
ALLSELLLGLL	11	Unmodified	_ALLSELLLGLL_					0	0	0			REV__ENST00000417456.1_1_1:35441975-35442986:-|nuORF	REV__ENST00000417456.1_1_1:35441975-35442986:-|nuORF	MSMS	A375_MHC_IP_R2	2	385.6096496582031	3	385.58468	1153.73221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.946	1	37.717	37.217	38.217	0.7709								0	0	0	0.16336	1	13496	13496		1.2148	0.10508	1		+		2948	24542	1913	1934	2874	2874					0.16149474927965457
ALLSFGKLQS	10	Unmodified	_ALLSFGKLQS_					0	0	0			REV__ENSG00000143799|ENST00000366794|PARP1	REV__ENSG00000143799|ENST00000366794|PARP1	MSMS	A375_MHC_IP_R2	2	532.7113647460938	2	532.310949	1062.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.709	1	69.444	68.944	69.944	0.73511								0	0	0	0.1524	1	26036	26036		13.042	4.4492	1		+		2949	19387	1914	1935	2875	2875					0.0785460251142922
ALLSGFVTGA	10	Unmodified	_ALLSGFVTGA_					0	0	0		ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	MULTI-MSMS	A375_MHC_IP_R1	1	936.8413696289062	1	935.519659	934.512382	0.13814	0.00012923	-0.040078	-3.7494E-05	0.098058	9.1735E-05	935.5192972663294	111.35	0.8699	111.35	111	111.87	0					42	16	3	0	0	0	0.10503	1	40813	40813		62.573	28.47	1	23387000			2950	6160	1915	1936	2876	2876					0.04250669040231969
ALLSGFVTGA	10	Unmodified	_ALLSGFVTGA_					0	0	0		ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	MULTI-MSMS	A375_MHC_IP_R2	2	936.5409545898438	1	935.519659	934.512382	-0.080171	-7.5002E-05	0.75012	0.00070175	0.66995	0.00062675	935.5200492836484	110.55	0.86533	111.29	110.83	111.7	0.73692					40	16	3	0	0	0	0.42311	1	41753	41753		32.786	5.902	1	20795000			2951	6160	1915	1936	2877	2877					0.04250669040231969
ALLSGLREA	9	Unmodified	_ALLSGLREA_					0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	MULTI-SECPEP	A375_MHC_IP_R1	1	465.67388916015625	2	465.274367	928.53418	-0.17659	-8.2164E-05	-0.56861	-0.00026456	-0.7452	-0.00034672	465.2741828000251	57.124	0.81414	57.124	56.804	57.618	0					28	15	3	0	0	0	0.20059	1	20460	20460		59.368	8.5134	1	6322800			2952	866	1916	1937	2878	2878					0.06705473788792915
ALLSGLREA	9	Unmodified	_ALLSGLREA_					0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	MULTI-MSMS	A375_MHC_IP_R2	2	465.67413330078125	2	465.274367	928.53418	-0.88857	-0.00041343	-0.43227	-0.00020113	-1.3208	-0.00061455	465.2742818564272	56.187	0.76626	56.938	56.489	57.255	0.75015					30	14	3	0	0	0	0.12748	1	21198	21198		45.74	5.7826	1	6108800			2953	866	1916	1937	2879	2879					0.06705473788792915
ALLSHVPRA	9	Unmodified	_ALLSHVPRA_					0	0	0		ENST00000453096.6_1_11:18343889-18344213:+|nuORF	ENST00000453096.6_1_11:18343889-18344213:+|nuORF	ENST00000453096.6_1_11:18343889-18344213:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	482.1429443359375	2	482.290351	962.566149	-0.78041	-0.00037639	0.47342	0.00022833	-0.30699	-0.00014806	482.2906870662674	35.617	0.20342	36.381	36.283	36.486	0.76338					5	3	2	0	0	0	0.63327	1	12953	12953		24.021	9.1823	1	769890			2954	12091	1917	1938	2880	2880					0.08336886262600274
ALLSHVPRA	9	Unmodified	_ALLSHVPRA_					0	0	0		ENST00000453096.6_1_11:18343889-18344213:+|nuORF	ENST00000453096.6_1_11:18343889-18344213:+|nuORF	ENST00000453096.6_1_11:18343889-18344213:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	482.290351	962.566149	-0.6723	-0.00032424	0.099805	4.8135E-05	-0.57249	-0.00027611	482.29030101878647	36.651	0.35603	36.651	36.489	36.845	0	0.13518	-0.00020769	NaN	24.021	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	937290			2955	12091	1917	1938							0.08336886262600274
ALLSIIATV	9	Unmodified	_ALLSIIATV_					0	0	0		ENST00000515876.5_1_4:941527-949679:+|nuORF;ENSG00000127419|ENST00000264771|TMEM175;ENST00000452360.6_1_4:941527-942053:+|nuORF;ENST00000505734.1_1_4:941527-942022:+|nuORF	ENST00000515876.5_1_4:941527-949679:+|nuORF	ENST00000515876.5_1_4:941527-949679:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	451.1910095214844	2	450.791861	899.569169	-0.37547	-0.00016926	-0.68647	-0.00030946	-1.0619	-0.00047871	450.7914503459639	130.18	0.30597	130.18	130.06	130.36	0					11	5	3	0	0	0	0.0091485	1	50103	50103		101.72	4.6473	1	15782000			2956	4090	1918	1939	2881	2881					0.11536716596754104
ALLSRLEQI	9	Unmodified	_ALLSRLEQI_					0	0	0		nc|ENSG00000125970|Q9UKM9-2|RALY;ENSG00000125970|ENST00000246194|RALY;ENST00000481580.1_1_20:32664521-32665129:+|nuORF	nc|ENSG00000125970|Q9UKM9-2|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	MULTI-SECPEP	A375_MHC_IP_R1	1	522.2160034179688	2	521.816399	1041.61824	-0.70573	-0.00036826	-0.083159	-4.3394E-05	-0.78889	-0.00041165	521.8163338989862	85.12	0.55804	85.12	84.904	85.462	0					21	10	3	0	0	0	0.39273	1	31165	31165		37.075	2.1426	1	4399500			2957	4015	1919	1940	2882	2882					0.09910004885705348
ALLSRLEQI	9	Unmodified	_ALLSRLEQI_					0	0	0		nc|ENSG00000125970|Q9UKM9-2|RALY;ENSG00000125970|ENST00000246194|RALY;ENST00000481580.1_1_20:32664521-32665129:+|nuORF	nc|ENSG00000125970|Q9UKM9-2|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	MULTI-MSMS	A375_MHC_IP_R2	2	522.4334716796875	2	521.816399	1041.61824	-0.51489	-0.00026868	-0.35851	-0.00018708	-0.87341	-0.00045576	521.8160376331459	84.178	0.51158	84.918	84.663	85.175	0.73962					20	9	3	0	0	0	0.066859	1	32046	32046		57.722	9.3761	1	5557600			2958	4015	1919	1940	2883	2883					0.09910004885705348
ALLSSLARC	9	Unmodified	_ALLSSLARC_					0	0	0		nc|ENSG00000107789|Q9UNW1-3|MINPP1;nc|ENSG00000107789|Q9UNW1-2|MINPP1;ENSG00000107789|ENST00000371996|MINPP1	nc|ENSG00000107789|Q9UNW1-3|MINPP1	nc|ENSG00000107789|Q9UNW1-3|MINPP1	MULTI-MSMS	A375_MHC_IP_R1	1	467.66265869140625	2	467.262945	932.511337	-0.14427	-6.7414E-05	-0.19429	-9.0782E-05	-0.33856	-0.0001582	467.2627847060499	71.082	2.688	71.082	70.648	73.336	0					86	52	4	0	0	0	0.02559	2	25981	25981;26217		78.728	23.954	1	28113000			2959	2758	1920	1941	2884;2885	2884					0.0423813139966569
ALLSSNPNF	9	Unmodified	_ALLSSNPNF_					0	0	0		nc|ENSG00000153246|Q13018-2|PLA2R1;ENSG00000153246|ENST00000283243|PLA2R1	nc|ENSG00000153246|Q13018-2|PLA2R1	nc|ENSG00000153246|Q13018-2|PLA2R1	MULTI-SECPEP	A375_MHC_IP_R2	2	482.15802001953125	2	481.750724	961.486896	-0.58003	-0.00027943	-0.97611	-0.00047024	-1.5561	-0.00074967	481.75022977816946	82.704	0.35243	83.447	83.246	83.598	0.74293					11	6	3	0	0	0	0.67221	1	31472	31472		13.508	3.434	1	1304300			2960	6021	1921	1942	2886	2886					0.0046119451779986775
ALLSTEIGL	9	Unmodified	_ALLSTEIGL_					0	0	0		ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	MULTI-SECPEP	A375_MHC_IP_R2	2	459.1712341308594	2	458.771126	915.527698	-0.16428	-7.5365E-05	-1.1293	-0.00051811	-1.2936	-0.00059347	458.77049884007874	115.12	0.81766	115.81	115.22	116.04	0.68999					20	15	2	0	0	0	0.04649	1	43379	43379		86.121	11.725	1	4931200			2961	6160	1922	1943	2887	2887					0.06655535837421667
ALLSTEIGL	9	Unmodified	_ALLSTEIGL_					0	0	0		ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	MULTI-SECPEP	A375_MHC_IP_R2	2	917.094482421875	1	916.534975	915.527698	-0.15541	-0.00014244	0.16776	0.00015376	0.012351	1.132E-05	916.5353292441316	114.99	1.067	115.68	115.37	116.44	0.68999					42	20	3	0	0	0	0.011042	1	43373	43373		117.6	39.614	1	34388000			2962	6160	1922	1943	2888	2888					0.06655535837421667
ALLSTEIGL	9	Unmodified	_ALLSTEIGL_					0	0	0		ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	MULTI-MATCH	A375_MHC_IP_R1	1		1	916.534975	915.527698	0.23587	0.00021618	0.01997	1.8303E-05	0.25584	0.00023448	916.5351700785159	116.01	1.424	116.01	115.53	116.95	0	0.16524	-2.5745E-05	NaN	117.6	50	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37268000			2963	6160	1922	1943							0.06655535837421667
ALLSTLHTV	9	Unmodified	_ALLSTLHTV_					0	0	0		ENSG00000178950|ENST00000314167|GAK;nc|ENSG00000178950|O14976-2|GAK;ENST00000502799.1_1_4:843463-843892:-|nuORF	ENSG00000178950|ENST00000314167|GAK	ENSG00000178950|ENST00000314167|GAK	MULTI-SECPEP	A375_MHC_IP_R1	1	478.18414306640625	2	477.784567	953.554582	-0.88058	-0.00042073	0.1374	6.5648E-05	-0.74318	-0.00035508	477.7846676708303	67.879	0.50481	67.879	67.654	68.159	0					14	9	2	0	0	0	0.10969	1	24618	24618		48.346	0	1	1178200			2964	8189	1923	1944	2889	2889					0.07594644448613508
ALLSTLHTV	9	Unmodified	_ALLSTLHTV_					0	0	0		ENSG00000178950|ENST00000314167|GAK;nc|ENSG00000178950|O14976-2|GAK;ENST00000502799.1_1_4:843463-843892:-|nuORF	ENSG00000178950|ENST00000314167|GAK	ENSG00000178950|ENST00000314167|GAK	MULTI-SECPEP	A375_MHC_IP_R2	2	478.1842956542969	2	477.784567	953.554582	-0.62293	-0.00029763	0.12624	6.0314E-05	-0.4967	-0.00023731	477.78463530012067	66.803	0.40839	67.54	67.342	67.75	0.73631					13	7	2	0	0	0	0.025883	1	25314	25314		77.984	7.2688	1	1936300			2965	8189	1923	1944	2890	2890					0.07594644448613508
ALLSWYSAA	9	Unmodified	_ALLSWYSAA_					0	0	0			REV__ENST00000582179.5_1_17:70943804-71084903:-|nuORF	REV__ENST00000582179.5_1_17:70943804-71084903:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	491.6546936035156	2	491.255643	980.496732	-0.42854	-0.00021052	-0.74839	-0.00036765	-1.1769	-0.00057817	491.25528074884664	68.916	2.4381	69.651	68.662	71.1	0.73511					83	47	3	0	0	0	0.13491	1	26235	26235		44.407	19.733	1	18495000	+		2966	18712	1924	1945	2891	2891					0.005703825231762494
ALLSWYSAA	9	Unmodified	_ALLSWYSAA_					0	0	0			REV__ENST00000582179.5_1_17:70943804-71084903:-|nuORF	REV__ENST00000582179.5_1_17:70943804-71084903:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	491.6549377441406	2	491.255643	980.496732	-0.42854	-0.00021052	-0.74839	-0.00036765	-1.1769	-0.00057817	491.25528074884664	68.916	2.4381	69.651	68.662	71.1	0.73511					83	47	3	0	0	0	0.52144	1	26023	26023		30.225	30.225	1	18495000	+		2967	18712	1924	1945	2892	2892					0.005703825231762494
ALLSWYSAA	9	Unmodified	_ALLSWYSAA_					0	0	0			REV__ENST00000582179.5_1_17:70943804-71084903:-|nuORF	REV__ENST00000582179.5_1_17:70943804-71084903:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	491.255643	980.496732	0.099587	4.8922E-05	-0.94743	-0.00046543	-0.84784	-0.00041651	491.25530144721637	69.762	2.031	69.762	68.769	70.8	0	0.055745	-0.00010253	NaN	44.407	74	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14378000	+		2968	18712	1924	1945							0.005703825231762494
ALLTFMEQV	9	Unmodified	_ALLTFMEQV_					0	0	0		ENSG00000106624|ENST00000223357|AEBP1;nc|ENSG00000106624|Q8IUX7-2|AEBP1	ENSG00000106624|ENST00000223357|AEBP1;nc|ENSG00000106624|Q8IUX7-2|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	MULTI-MSMS	A375_MHC_IP_R2	2	526.6776123046875	2	526.27826	1050.54197	-0.52582	-0.00027673	-0.32525	-0.00017117	-0.85107	-0.0004479	526.2780490634625	128.08	0.60893	128.35	127.97	128.58	0.26593					17	11	3	0	0	0	0.0053789	1	50308	50308		163.04	97.801	1	5685400			2969	2703;14529	1925	1946	2893	2893					0.018718649940637988
ALLTGIISKA	10	Unmodified	_ALLTGIISKA_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-SECPEP	A375_MHC_IP_R1	1	494.2156066894531	2	493.815867	985.617182	-0.19257	-9.5096E-05	-0.23404	-0.00011557	-0.42661	-0.00021067	493.8158130001749	82.476	0.50888	82.476	82.214	82.722	0					18	9	3	0	0	0	0.43087	1	30178	30178		55.249	19.122	1	2332000			2970	6149	1926	1947	2894	2894					0.12379790516808953
ALLTGIISKA	10	Unmodified	_ALLTGIISKA_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-SECPEP	A375_MHC_IP_R2	2	493.6726989746094	2	493.815867	985.617182	-0.57717	-0.00028502	0.074033	3.6559E-05	-0.50314	-0.00024846	493.81586227278	81.512	0.5543	82.255	81.979	82.533	0.74293					16	10	2	0	0	0	0.31583	1	30935	30935		61.09	13.496	1	2346600			2971	6149	1926	1947	2895	2895					0.12379790516808953
ALLTGPASSLV	11	Unmodified	_ALLTGPASSLV_					0	0	0		FHOD1|p.P407L|1|0.33|ENSG00000135723|chr16:67236656-67236656|G/A|missense_variant	FHOD1|p.P407L|1|0.33|ENSG00000135723|chr16:67236656-67236656|G/A|missense_variant	FHOD1|p.P407L|1|0.33|ENSG00000135723|chr16:67236656-67236656|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	515.220703125	2	514.802957	1027.59136	-0.66037	-0.00033996	1.6041	0.00082581	0.94376	0.00048585	514.8039451830217	69.21	0.55757	69.945	69.525	70.082	0.73511					16	10	2	0	0	0	0.72469	1	26250	26250		36.127	2.0246	1	4851100			2972	14000	1927	1948	2896	2896					0.07866896274504143
ALLVGPIRA	9	Unmodified	_ALLVGPIRA_					0	0	0			REV__ENST00000532150.1_1_11:75917479-75921696:-|nuORF	REV__ENST00000532150.1_1_11:75917479-75921696:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	455.697509765625	2	455.297645	908.580737	-0.43755	-0.00019921	-0.12008	-5.4672E-05	-0.55763	-0.00025389	455.29753755573086	86.452	0.65877	86.452	86.172	86.831	0					18	12	2	0	0	0	0.060021	1	31707	31707		60.39	9.5345	1	3064600	+		2973	25863	1928	1949	2897	2897					0.1227895841074087
ALLVGPIRA	9	Unmodified	_ALLVGPIRA_					0	0	0			REV__ENST00000532150.1_1_11:75917479-75921696:-|nuORF	REV__ENST00000532150.1_1_11:75917479-75921696:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	455.297645	908.580737	-0.43755	-0.00019921	-0.12008	-5.4672E-05	-0.55763	-0.00025389	455.29753755573086	86.452	0.65877	86.452	86.172	86.831	0	0.10005	7.8988E-05	NaN	60.39	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3064600	+		2974	25863	1928	1949							0.1227895841074087
ALLVKTTLNI	10	Unmodified	_ALLVKTTLNI_					0	0	0		nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	MULTI-SECPEP	A375_MHC_IP_R1	1	543.7495727539062	2	543.350074	1084.6856	-0.79006	-0.00042928	0.49275	0.00026773	-0.29731	-0.00016154	543.3498745624239	86.054	0.50657	86.054	85.717	86.224	0					15	9	3	0	0	0	0.69172	1	31579	31579		19.257	0	1	2604600			2975	14849	1929	1950	2898	2898					0.14664035096643602
ALLYGDPEL	9	Unmodified	_ALLYGDPEL_					0	0	0		ENSG00000138080|ENST00000380320|EMILIN1;nc|ENSG00000138080|Q9Y6C2-2|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	MULTI-SECPEP	A375_MHC_IP_R2	2	496.16009521484375	2	495.760758	989.506963	-0.43544	-0.00021587	0.34342	0.00017025	-0.09202	-4.562E-05	495.7607936312906	103.7	0.6608	104.46	104.09	104.75	0.76428					26	12	3	0	0	0	0.52144	1	39223	39223		30.225	9.7712	1	3464500			2976	4954	1930	1951	2899	2899					0.011789454577638026
ALLYHCHF	8	Unmodified	_ALLYHCHF_					0	0	0		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;ENST00000583043.5_1_18:67684852-67806940:-|nuORF	nc|ENSG00000176225|Q86VV8-3|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-SECPEP	A375_MHC_IP_R1	1	501.69293212890625	2	502.244555	1002.47456	0.060447	3.0359E-05	3.2473	0.001631	3.3078	0.0016613	502.24612615203165	69.822	0.70829	69.822	69.377	70.085	0					17	13	2	0	0	0	0.95327	1	25293	25293		2.8892	0	1	1139100			2977	8010	1931	1952	2900	2900					-0.026581204262242863
ALMDEVVKA	9	Unmodified	_ALMDEVVKA_					0	0	0		nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1	nc|ENSG00000102144|P00558-2|PGK1	nc|ENSG00000102144|P00558-2|PGK1	MULTI-SECPEP	A375_MHC_IP_R1	1	488.6623840332031	2	488.26261	974.510668	-0.1938	-9.4627E-05	-0.2344	-0.00011445	-0.4282	-0.00020908	488.26249154962	62.173	1.1766	62.173	61.636	62.813	0					34	22	2	0	0	0	0.056023	1	22415	22415		75.761	39.634	1	9372600			2978	2359	1932	1953	2901	2901					0.022392919599724337
ALMDEVVKA	9	Oxidation (M)	_ALM(Oxidation (M))DEVVKA_		ALM(1)DEVVKA		ALM(64)DEVVKA	0	0	1		nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1	nc|ENSG00000102144|P00558-2|PGK1	nc|ENSG00000102144|P00558-2|PGK1	MULTI-SECPEP	A375_MHC_IP_R1	1	496.66021728515625	2	496.260068	990.505582	-0.46948	-0.00023299	0.43443	0.00021559	-0.035055	-1.7396E-05	496.26025869060766	37.007	0.5038	37.007	36.695	37.198	0					23	9	3	0	0	0	0.14606	1	12448	12448		63.961	35.474	1	5607200			2979	2359	1932	1954	2902	2902		99			0.009949880973636027
ALMDEVVKA	9	Oxidation (M)	_ALM(Oxidation (M))DEVVKA_		ALM(1)DEVVKA		ALM(83)DEVVKA	0	0	1		nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1	nc|ENSG00000102144|P00558-2|PGK1	nc|ENSG00000102144|P00558-2|PGK1	MULTI-SECPEP	A375_MHC_IP_R2	2	496.65972900390625	2	496.260068	990.505582	-0.61584	-0.00030561	0.070834	3.5152E-05	-0.545	-0.00027046	496.26012776643245	36.26	0.76421	37.03	36.595	37.359	0.7709					24	14	3	0	0	0	0.061442	1	13211	13211		82.529	54.901	1	6637200			2980	2359	1932	1954	2903	2903		99			0.009949880973636027
ALMDFAYTA	9	Unmodified	_ALMDFAYTA_					0	0	0		ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	MULTI-SECPEP	A375_MHC_IP_R1	1	1002.8606567382812	1	1002.4601	1001.45282	0.4021	0.00040309	0.66754	0.00066918	1.0696	0.0010723	1002.4602361269132	109.63	0.51139	109.63	109.52	110.04	0					16	9	2	0	0	0	0.050875	1	40273	40273		54.774	24.549	1	2800100			2981	8190	1933	1955	2904	2904					-0.04784969965464825
ALMDFAYTA	9	Unmodified	_ALMDFAYTA_					0	0	0		ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	MULTI-MATCH	A375_MHC_IP_R2	2		1	1002.4601	1001.45282	0.078934	7.9128E-05	0.41001	0.00041102	0.48895	0.00049015	1002.4601563920844	108.97	0.56175	109.71	109.42	109.98	0.74684	0.039913	-0.00014914	NaN	54.774	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2787700			2982	8190	1933	1955							-0.04784969965464825
ALMDLLLRL	9	Unmodified	_ALMDLLLRL_					0	0	0		nc|ENSG00000100239|O75170-6|PPP6R2;nc|ENSG00000100239|O75170-2|PPP6R2;nc|ENSG00000100239|O75170-4|PPP6R2;nc|ENSG00000100239|O75170-3|PPP6R2;ENSG00000100239|ENST00000612753|PPP6R2;nc|ENSG00000100239|O75170|PPP6R2	nc|ENSG00000100239|O75170-6|PPP6R2	nc|ENSG00000100239|O75170-6|PPP6R2	MULTI-SECPEP	A375_MHC_IP_R1	1	529.7249755859375	2	529.325545	1056.63654	-0.78416	-0.00041508	-0.95485	-0.00050543	-1.739	-0.0009205	529.3247269642152	131.45	0.30186	131.45	131.28	131.58	0					8	5	2	0	0	0	0.69507	1	50710	50710		19.257	0	1	3362900			2983	2142	1934	1956	2905	2905					0.11048423536067276
ALMDLLLRL	9	Unmodified	_ALMDLLLRL_					0	0	0		nc|ENSG00000100239|O75170-6|PPP6R2;nc|ENSG00000100239|O75170-2|PPP6R2;nc|ENSG00000100239|O75170-4|PPP6R2;nc|ENSG00000100239|O75170-3|PPP6R2;ENSG00000100239|ENST00000612753|PPP6R2;nc|ENSG00000100239|O75170|PPP6R2	nc|ENSG00000100239|O75170-6|PPP6R2	nc|ENSG00000100239|O75170-6|PPP6R2	MULTI-SECPEP	A375_MHC_IP_R2	2	529.7247924804688	2	529.325545	1056.63654	-0.55177	-0.00029207	-0.56234	-0.00029766	-1.1141	-0.00058973	529.3251068767696	131.22	0.20348	131.41	131.29	131.49	0.18953					5	3	2	0	0	0	0.75164	1	51648	51648		13.906	0	1	3569700			2984	2142	1934	1956	2906	2906					0.11048423536067276
ALMEHGCVQL	10	Unmodified	_ALMEHGCVQL_					0	0	0			REV__ENST00000459929.5_1_1:185275751-185278625:-|nuORF	REV__ENST00000459929.5_1_1:185275751-185278625:-|nuORF	MSMS	A375_MHC_IP_R1	1	550.6924438476562	2	550.764994	1099.51544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.039	1	91.039	90.539	91.539	0								0	0	0	0.14601	1	33451	33451		25.399	6.1423	1		+		2985	17963	1935	1957	2907	2907					-0.030341471689098398
ALMEQQHYV	9	Unmodified	_ALMEQQHYV_					0	0	0		ENSG00000105855|ENST00000222573|ITGB8;nc|ENSG00000105855|P26012-2|ITGB8;ITGB8|p.D671N|1|0.36|ENSG00000105855|chr7:20406159-20406159|G/A|missense_variant	ENSG00000105855|ENST00000222573|ITGB8	ENSG00000105855|ENST00000222573|ITGB8	MULTI-SECPEP	A375_MHC_IP_R1	1	560.16845703125	2	559.768591	1117.52263	-0.36049	-0.00020179	-0.42859	-0.00023991	-0.78907	-0.0004417	559.7683409890919	43.376	0.3557	43.376	43.197	43.553	0					15	6	3	0	0	0	0.047455	1	15082	15082		88.904	38.049	1	5197700			2986	2644	1936	1958	2908	2908					-0.031430912968289704
ALMEQQHYV	9	Unmodified	_ALMEQQHYV_					0	0	0		ENSG00000105855|ENST00000222573|ITGB8;nc|ENSG00000105855|P26012-2|ITGB8;ITGB8|p.D671N|1|0.36|ENSG00000105855|chr7:20406159-20406159|G/A|missense_variant	ENSG00000105855|ENST00000222573|ITGB8	ENSG00000105855|ENST00000222573|ITGB8	MULTI-SECPEP	A375_MHC_IP_R2	2	560.1680297851562	2	559.768591	1117.52263	-0.59971	-0.0003357	-0.40992	-0.00022946	-1.0096	-0.00056516	559.7683414397898	42.655	0.45669	43.427	43.167	43.623	0.7724					14	8	2	0	0	0	0.04395	1	15865	15865		81.89	41.933	1	8153500			2987	2644	1936	1958	2909	2909					-0.031430912968289704
ALMNLIQYI	9	Unmodified	_ALMNLIQYI_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-SECPEP	A375_MHC_IP_R1	1	540.2013549804688	2	539.801903	1077.58925	-0.8981	-0.0004848	-0.50527	-0.00027275	-1.4034	-0.00075754	539.8017518767953	132.92	0.25667	132.92	132.79	133.05	0					9	4	3	0	0	0	0.3243	1	51282	51282		28.487	0	1	4702000			2988	1419	1937	1959	2910	2910					0.05356144265056173
ALMNTLLYL	9	Unmodified	_ALMNTLLYL_					0	0	0		ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	MULTI-MSMS	A375_MHC_IP_R1	1	526.6957397460938	2	526.296453	1050.57835	-0.71871	-0.00037826	-0.99988	-0.00052623	-1.7186	-0.00090449	526.2956745783406	131.96	0.35124	131.96	131.83	132.18	0					9	6	2	0	0	0	0.11296	1	50903	50903		48.346	3.9388	1	7522200			2989	8705	1938	1960	2911	2911					0.055087418907760366
ALMNTLLYL	9	Unmodified	_ALMNTLLYL_					0	0	0		ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	MULTI-MATCH	A375_MHC_IP_R2	2		2	526.296453	1050.57835	-0.43155	-0.00022713	-0.6116	-0.00032189	-1.0432	-0.00054901	526.2960807525741	131.74	0.20215	131.93	131.8	132	0.18953	-0.016103	5.9541E-05	NaN	48.346	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3201700			2990	8705	1938	1960							0.055087418907760366
ALMPVLNQV	9	Oxidation (M)	_ALM(Oxidation (M))PVLNQV_		ALM(1)PVLNQV		ALM(150)PVLNQV	0	0	1		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	A375_MHC_IP_R1	1	501.1784362792969	2	500.778428	999.542302	-0.20523	-0.00010277	-0.095006	-4.7577E-05	-0.30023	-0.00015035	500.77839669220015	78.53	1.1182	78.53	78.352	79.47	0					52	21	3	0	0	0	0.001076	1	28678	28678		153.26	88.027	1	111930000			2991	9684	1939	1961	2912	2912		440			0.04251284713939185
ALMPVLNQV	9	Oxidation (M)	_ALM(Oxidation (M))PVLNQV_		ALM(1)PVLNQV		ALM(140)PVLNQV	0	0	1		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	A375_MHC_IP_R1	1	501.18707275390625	2	500.778428	999.542302	-0.23955	-0.00011996	-0.34382	-0.00017218	-0.58337	-0.00029214	500.77821169215775	110.78	1.2778	110.78	110.39	111.67	0					43	24	3	0	0	0	0.0036473	2	40583	40583;40597		137.59	75.625	1	3856500			2992	9684	1939	1961	2913;2914	2913		440			0.04251284713939185
ALMPVLNQV	9	Oxidation (M)	_ALM(Oxidation (M))PVLNQV_		ALM(1)PVLNQV		ALM(150)PVLNQV	0	0	1		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-SECPEP	A375_MHC_IP_R1	1	500.41046142578125	2	500.778428	999.542302	-0.26649	-0.00013345	-0.47417	-0.00023745	-0.74066	-0.00037091	500.7782812838134	78.179	1.1159	78.179	77.793	78.909	0					58	21	5	0	0	0	0.0088186	1	28533	28533		153.26	78.333	1	92557000			2993	9684	1939	1961	2915	2915		440			0.04251284713939185
ALMPVLNQV	9	Oxidation (M)	_ALM(Oxidation (M))PVLNQV_		ALM(1)PVLNQV		ALM(40)PVLNQV	0	0	1		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-SECPEP	A375_MHC_IP_R1	1	500.4748229980469	2	500.778428	999.542302	-0.13059	-6.5395E-05	-0.16371	-8.198E-05	-0.29429	-0.00014737	500.77822517480826	108	2.3913	108	106.93	109.32	0					59	46	2	0	0	0	0.23974	1	39483	39483		40.449	22.314	1	853690			2994	9684	1939	1961	2916	2916		440			0.04251284713939185
ALMPVLNQV	9	Oxidation (M)	_ALM(Oxidation (M))PVLNQV_		ALM(1)PVLNQV		ALM(140)PVLNQV	0	0	1		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	A375_MHC_IP_R2	2	501.17816162109375	2	500.778428	999.542302	-0.5937	-0.00029731	-0.20369	-0.000102	-0.79739	-0.00039932	500.77835844484633	77.345	0.50816	78.088	77.757	78.265	0.74293					34	9	4	0	0	0	0.0036473	1	29313	29313		137.59	84.01	1	92737000			2995	9684	1939	1961	2917	2917		440			0.04251284713939185
ALMPVLNQV	9	Oxidation (M)	_ALM(Oxidation (M))PVLNQV_		ALM(1)PVLNQV		ALM(150)PVLNQV	0	0	1		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	A375_MHC_IP_R2	2	501.17822265625	2	500.778428	999.542302	-0.59135	-0.00029613	-0.11184	-5.6008E-05	-0.70319	-0.00035214	500.7783557636423	77.752	1.5783	78.494	78.216	79.794	0.74293					72	30	4	0	0	0	0.001076	1	29525	29525		153.26	78.333	1	83457000			2996	9684	1939	1961	2918	2918		440			0.04251284713939185
ALMPVLNQV	9	Oxidation (M)	_ALM(Oxidation (M))PVLNQV_		ALM(1)PVLNQV		ALM(130)PVLNQV	0	0	1		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	A375_MHC_IP_R2	2	501.177734375	2	500.778428	999.542302	-0.44584	-0.00022327	-0.087862	-4.4E-05	-0.5337	-0.00026727	500.7783268557856	109.87	1.4267	110.61	110.28	111.71	0.74684					51	27	3	0	0	0	0.008207	2	41421	41421;41458		129.2	75.625	1	6995000			2997	9684	1939	1961	2919;2920	2919		440			0.04251284713939185
ALMPVLNQV	9	Oxidation (M)	_ALM(Oxidation (M))PVLNQV_		ALM(1)PVLNQV		ALM(150)PVLNQV	0	0	1		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-SECPEP	A375_MHC_IP_R2	2	500.474853515625	2	500.778428	999.542302	-0.47559	-0.00023817	0.32107	0.00016078	-0.15452	-7.738E-05	500.7782717665237	84.506	7.9738	85.242	83.39	91.364	0.73602					288	156	3	0	0	0	0.0088186	1	32170	32170		153.26	85.182	1	8208300			2998	9684	1939	1961	2921	2921		440			0.04251284713939185
ALMPVLNQV	9	Unmodified	_ALMPVLNQV_					0	0	0		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	A375_MHC_IP_R1	1	493.1813049316406	2	492.78097	983.547388	-0.19916	-9.8145E-05	-0.10974	-5.4077E-05	-0.3089	-0.00015222	492.7809955333249	110.72	2.0414	110.72	110.34	112.38	0					94	39	5	0	0	0	0.008381	2	40524	40524;40723		170.4	106.83	1	118500000			2999	9684	1939	1962	2922;2923	2922					0.05495588576548016
ALMPVLNQV	9	Unmodified	_ALMPVLNQV_					0	0	0		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	A375_MHC_IP_R2	2	493.1806335449219	2	492.78097	983.547388	-0.37264	-0.00018363	0.023553	1.1606E-05	-0.34908	-0.00017202	492.7810483644699	109.87	1.4771	110.61	110.23	111.71	0.74684					80	28	5	0	0	0	0.008381	2	41376	41376;41585		170.4	106.83	1	144730000			3000	9684	1939	1962	2924;2925	2924					0.05495588576548016
ALMQERPV	8	Unmodified	_ALMQERPV_					0	0	0		ENST00000569930.1_1_16:2133412-2138608:+|nuORF	ENST00000569930.1_1_16:2133412-2138608:+|nuORF	ENST00000569930.1_1_16:2133412-2138608:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	471.66845703125	2	472.25512	942.495686	-0.6141	-0.00029001	1.8771	0.00088645	1.263	0.00059644	472.25699910303626	39.734	0.306	40.509	40.32	40.626	0.77451					7	5	2	0	0	0	0.97144	1	14667	14667		2.3027	0.24298	1	941230			3001	13597	1940	1963	2926	2926					0.02213844882646754
ALNANFVSWK	10	Unmodified	_ALNANFVSWK_					0	0	0		ENST00000487429.1_1_6:43025779-43026944:-|nuORF;ENST00000491898.5_1_6:43023672-43027146:-|nuORF;ENSG00000112651|ENST00000388752|MRPL2	ENST00000487429.1_1_6:43025779-43026944:-|nuORF	ENST00000487429.1_1_6:43025779-43026944:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	384.2963562011719	3	383.873224	1148.59784	-0.22823	-8.7611E-05	3.303	0.001268	3.0748	0.0011803	384.2082312352282	33.093	0.61001	33.845	33.382	33.992	0.75225					16	11	2	0	0	0	0.78945	1	11859	11859		8.4443	0	1	5211600			3002	3098	1941	1964	2927	2927					0.029488342258900957
ALNARLPL	8	Unmodified	_ALNARLPL_					0	0	0		ENSG00000100385|ENST00000216223|IL2RB	ENSG00000100385|ENST00000216223|IL2RB	ENSG00000100385|ENST00000216223|IL2RB	MSMS	A375_MHC_IP_R2	2	434.1946105957031	2	434.27417	866.533787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.249	1	86.982	86.482	87.482	0.733								0	0	0	0.16876	1	32800	32800		14.582	1.0738	1				3003	2171	1942	1965	2928	2928					0.09518098859598467
ALNDHFVKL	9	Unmodified	_ALNDHFVKL_					0	0	0		ENSG00000111640|ENST00000229239|GAPDH;nc|ENSG00000111640|P04406-2|GAPDH;ENST00000466525.1_1_12:6646524-6647333:+|nuORF;ENST00000405405.2_1_6:80662724-80663060:-|nuORF	ENSG00000111640|ENST00000229239|GAPDH	ENSG00000111640|ENST00000229239|GAPDH	MULTI-SECPEP	A375_MHC_IP_R2	2	353.2659912109375	3	352.86607	1055.57638	-0.60611	-0.00021388	0.047942	1.6917E-05	-0.55817	-0.00019696	352.8660425774398	52.23	0.40567	52.982	52.729	53.134	0.75225					17	7	3	0	0	0	0.67483	1	19725	19725		14.405	6.2499	1	2084200			3004	3003	1943	1966	2929	2929					0.0508144919717779
ALNDHFVKL	9	Unmodified	_ALNDHFVKL_					0	0	0		ENSG00000111640|ENST00000229239|GAPDH;nc|ENSG00000111640|P04406-2|GAPDH;ENST00000466525.1_1_12:6646524-6647333:+|nuORF;ENST00000405405.2_1_6:80662724-80663060:-|nuORF	ENSG00000111640|ENST00000229239|GAPDH	ENSG00000111640|ENST00000229239|GAPDH	MULTI-MATCH	A375_MHC_IP_R1	1		3	352.86607	1055.57638	-0.24181	-8.5328E-05	0.12736	4.4939E-05	-0.11446	-4.0388E-05	352.8660051509845	53.118	0.50512	53.118	52.796	53.301	0	0.067849	3.5443E-05	NaN	19.362	16	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1621900			3005	3003	1943	1966							0.0508144919717779
ALNEDIVRV	9	Unmodified	_ALNEDIVRV_					0	0	0		ENSG00000166813|ENST00000394412|KIF7	ENSG00000166813|ENST00000394412|KIF7	ENSG00000166813|ENST00000394412|KIF7	MSMS	A375_MHC_IP_R1	1	514.7107543945312	2	514.790381	1027.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.27	1	61.27	60.77	61.77	0								0	0	0	0.076528	1	22081	22081		47.594	5.7548	1				3006	7112	1944	1967	2930	2930					0.05352841471949432
ALNEDIVRV	9	Unmodified	_ALNEDIVRV_					0	0	0		ENSG00000166813|ENST00000394412|KIF7	ENSG00000166813|ENST00000394412|KIF7	ENSG00000166813|ENST00000394412|KIF7	MULTI-MSMS	A375_MHC_IP_R2	2	515.1900024414062	2	514.790381	1027.56621	-1.0574	-0.00054436	-0.27173	-0.00013988	-1.3292	-0.00068424	514.7903340541951	60.58	0.91508	61.325	60.651	61.566	0.74503					30	17	3	0	0	0	0.01185	1	22931	22931		93.938	36.216	1	6433200			3007	7112	1944	1967	2931	2931					0.05352841471949432
ALNEKLVNL	9	Unmodified	_ALNEKLVNL_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-SECPEP	A375_MHC_IP_R1	1	507.70263671875	2	507.303124	1012.5917	-0.52837	-0.00026804	-1.3168	-0.00066799	-1.8451	-0.00093604	507.30296796879	65.641	2.0908	65.641	65.206	67.297	0					117	40	5	0	0	0	0.011418	1	23733	23733		125.04	32.384	1	45125000			3008	7956	1945	1968	2932	2932					0.08590315994376851
ALNEKLVNL	9	Unmodified	_ALNEKLVNL_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-SECPEP	A375_MHC_IP_R2	2	507.70263671875	2	507.303124	1012.5917	-0.73718	-0.00037397	-1.1898	-0.00060359	-1.927	-0.00097756	507.30298131141086	64.798	2.2898	65.536	65.002	67.292	0.73811					111	44	5	0	0	0	0.010931	1	24529	24529		148.27	44.849	1	48523000			3009	7956	1945	1968	2933	2933					0.08590315994376851
ALNELLQHV	9	Unmodified	_ALNELLQHV_					0	0	0		nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	MULTI-MSMS	A375_MHC_IP_R1	1	519.8585815429688	2	518.792924	1035.57129	-0.54636	-0.00028345	-0.013784	-7.1513E-06	-0.56015	-0.0002906	518.7929144710193	81.322	1.2657	81.322	80.948	82.214	0					59	24	4	0	0	0	0.018546	1	29730	29730		85.272	49.228	1	37050000			3010	4857	1946	1969	2934	2934					0.05493145334571636
ALNELLQHV	9	Unmodified	_ALNELLQHV_					0	0	0		nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	MULTI-MSMS	A375_MHC_IP_R2	2	519.81298828125	2	518.792924	1035.57129	-0.7182	-0.0003726	-0.0074313	-3.8553E-06	-0.72563	-0.00037645	518.7929185150509	80.392	1.371	81.137	80.759	82.13	0.74474					64	26	4	0	0	0	0.2487	1	30596	30596		34.402	13.948	1	43424000			3011	4857	1946	1969	2935	2935					0.05493145334571636
ALNENIDRV	9	Unmodified	_ALNENIDRV_					0	0	0		nc|ENSG00000152782|Q8TE04-3|PANK1;nc|ENSG00000152782|Q8TE04-2|PANK1;nc|ENSG00000152782|Q8TE04-4|PANK1;ENSG00000152782|ENST00000307534|PANK1;nc|ENSG00000152782|Q8TE04|PANK1	nc|ENSG00000152782|Q8TE04-3|PANK1;nc|ENSG00000152782|Q8TE04|PANK1	nc|ENSG00000152782|Q8TE04-3|PANK1	MULTI-SECPEP	A375_MHC_IP_R2	2	522.979248046875	2	522.277638	1042.54072	-1.2052	-0.00062945	2.4375	0.001273	1.2323	0.00064359	522.2780243358238	37.144	0.35444	37.915	37.716	38.07	0.7709					11	6	2	0	0	0	0.57304	1	13580	13580		23.79	7.9426	1	1458600			3012	14687;14688	1947	1970	2936	2936					0.021153669495106442
ALNENINQV	9	Unmodified	_ALNENINQV_					0	0	0		nc|ENSG00000125779|Q9BZ23-3|PANK2;ENSG00000125779|ENST00000610179|PANK2;nc|ENSG00000125779|Q9BZ23|PANK2;nc|ENSG00000125779|Q9BZ23-2|PANK2	nc|ENSG00000125779|Q9BZ23-3|PANK2	nc|ENSG00000125779|Q9BZ23-3|PANK2	MULTI-MSMS	A375_MHC_IP_R1	1	508.6796569824219	2	507.764363	1013.51417	-0.025487	-1.2941E-05	-0.24457	-0.00012419	-0.27006	-0.00013713	507.7643786238307	49.461	0.96365	49.461	48.933	49.896	0					32	12	4	0	0	0	0.29981	1	17435	17435		30.637	5.2372	1	15718000			3013	3988	1948	1971	2937	2937					0.007956780581821477
ALNENINQV	9	Unmodified	_ALNENINQV_					0	0	0		nc|ENSG00000125779|Q9BZ23-3|PANK2;ENSG00000125779|ENST00000610179|PANK2;nc|ENSG00000125779|Q9BZ23|PANK2;nc|ENSG00000125779|Q9BZ23-2|PANK2	nc|ENSG00000125779|Q9BZ23-3|PANK2	nc|ENSG00000125779|Q9BZ23-3|PANK2	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9798889160156	2	507.764363	1013.51417	-0.84086	-0.00042696	0.12495	6.3446E-05	-0.7159	-0.00036351	507.7645140060158	48.786	1.0149	49.543	48.98	49.995	0.75737					48	13	5	0	0	0	0.011405	1	18290	18290		110.67	42.594	1	15403000			3014	3988	1948	1971	2938	2938					0.007956780581821477
ALNEQIARL	9	Unmodified	_ALNEQIARL_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-SECPEP	A375_MHC_IP_R1	1	514.6983032226562	2	514.298373	1026.58219	-0.3982	-0.00020479	0.82708	0.00042537	0.42888	0.00022057	514.2989722149449	56.588	0.4572	56.588	56.347	56.804	0					14	8	2	0	0	0	0.34746	1	20302	20302		45.7	16.618	1	2089500			3015	1726	1949	1972	2939	2939					0.0699654770885445
ALNEQIARL	9	Unmodified	_ALNEQIARL_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-SECPEP	A375_MHC_IP_R2	2	513.6607055664062	2	514.298373	1026.58219	-0.87094	-0.00044792	1.7236	0.00088643	0.85263	0.00043851	514.2993930355864	55.739	0.86425	56.489	56.033	56.898	0.75015					22	16	2	0	0	0	0.40377	1	21085	21085		41.956	15.687	1	2162300			3016	1726	1949	1972	2940	2940					0.0699654770885445
ALNETFKTL	9	Unmodified	_ALNETFKTL_					0	0	0		tr|U7T5E1|U7T5E1_FUSNU16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00032PE=3SV=1	tr|U7T5E1|U7T5E1_FUSNU16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00032PE=3SV=1	tr|U7T5E1|U7T5E1_FUSNU16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00032PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1921997070312	2	518.787307	1035.56006	-0.65407	-0.00033932	-0.19363	-0.00010045	-0.84769	-0.00043977	518.7870422581954	79.944	1.3173	80.689	79.744	81.062	0.74473					13	7	2	0	0	0	0.14572	1	30463	30463		45.7	15.859	1	4506900			3017	30020	1950	1973	2941	2941					0.04370323240414109
ALNETFKTL	9	Unmodified	_ALNETFKTL_					0	0	0		tr|U7T5E1|U7T5E1_FUSNU16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00032PE=3SV=1	tr|U7T5E1|U7T5E1_FUSNU16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00032PE=3SV=1	tr|U7T5E1|U7T5E1_FUSNU16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00032PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	518.787307	1035.56006	-0.66854	-0.00034683	0.56756	0.00029444	-0.10098	-5.2385E-05	518.7875391514654	80.797	1.5262	80.797	79.676	81.202	0	0.054029	0.00018837	NaN	45.7	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6890500			3018	30020	1950	1973							0.04370323240414109
ALNGEQEGF	9	Unmodified	_ALNGEQEGF_					0	0	0			REV__ENSG00000182898|ENST00000368806|TCHHL1	REV__ENSG00000182898|ENST00000368806|TCHHL1	MULTI-MSMS	A375_MHC_IP_R1	1	483.12158203125	2	482.722164	963.429775	-0.59616	-0.00028778	-0.15023	-7.2521E-05	-0.74639	-0.0003603	482.72203789562025	68.353	0.81396	68.353	67.955	68.769	0					38	15	3	0	0	0	0.63811	2	24730	24726;24730		12.532	9.3474	1	8502800	+		3019	21715	1951	1974	2942;2943	2943					-0.05340272758564879
ALNGEQEGF	9	Unmodified	_ALNGEQEGF_					0	0	0			REV__ENSG00000182898|ENST00000368806|TCHHL1	REV__ENSG00000182898|ENST00000368806|TCHHL1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	482.722164	963.429775	-0.5383	-0.00025985	-0.30176	-0.00014566	-0.84006	-0.00040552	482.72195061917364	67.684	0.91755	68.42	67.951	68.868	0.73631	0.033888	-6.3799E-05	NaN	12.532	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7939300	+		3020	21715	1951	1974							-0.05340272758564879
ALNGKLYLV	9	Unmodified	_ALNGKLYLV_					0	0	0		KLHL1|p.S604L|1|0.19|ENSG00000150361|chr13:69719573-69719573|G/A|missense_variant	KLHL1|p.S604L|1|0.19|ENSG00000150361|chr13:69719573-69719573|G/A|missense_variant	KLHL1|p.S604L|1|0.19|ENSG00000150361|chr13:69719573-69719573|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	496.16455078125	2	495.80276	989.590967	-0.17393	-8.6233E-05	0.41549	0.000206	0.24156	0.00011977	495.8029121701371	72.088	0.96348	72.088	71.815	72.779	0					42	18	4	0	0	0	0.010819	1	26187	26187		147.83	0	1	38798000			3021	14225	1952	1975	2944	2944					0.095755213453117
ALNGKLYLV	9	Unmodified	_ALNGKLYLV_					0	0	0		KLHL1|p.S604L|1|0.19|ENSG00000150361|chr13:69719573-69719573|G/A|missense_variant	KLHL1|p.S604L|1|0.19|ENSG00000150361|chr13:69719573-69719573|G/A|missense_variant	KLHL1|p.S604L|1|0.19|ENSG00000150361|chr13:69719573-69719573|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	496.2024230957031	2	495.80276	989.590967	-0.65608	-0.00032529	-0.078372	-3.8857E-05	-0.73445	-0.00036414	495.8026563853184	71.148	0.86029	71.883	71.656	72.516	0.73421					42	16	4	0	0	0	0.010819	1	26965	26965		147.83	0	1	40369000			3022	14225	1952	1975	2945	2945					0.095755213453117
ALNNEEDPV	9	Unmodified	_ALNNEEDPV_					0	0	0			REV__MDH1B|p.K480N|1|0.29|ENSG00000138400|chr2:206741073-206741073|T/A|missense_variant	REV__MDH1B|p.K480N|1|0.29|ENSG00000138400|chr2:206741073-206741073|T/A|missense_variant	MSMS	A375_MHC_IP_R2	2	500.6890869140625	2	500.732729	999.450904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.079	1	72.813	72.313	73.313	0.73421								0	0	0	0.1521	1	27351	27351		18.135	5.6034	1		+		3023	26998	1953	1976	2946	2946					-0.04884307449708558
ALNNLLHSL	9	Unmodified	_ALNNLLHSL_					0	0	0		ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF	ENSG00000157106|ENST00000446231|SMG1;ENST00000522480.5_1_16:21475086-21478634:-|nuORF	ENSG00000157106|ENST00000446231|SMG1	MULTI-SECPEP	A375_MHC_IP_R1	1	498.1871032714844	2	497.787641	993.56073	-0.39564	-0.00019694	-0.16012	-7.9707E-05	-0.55576	-0.00027665	497.7874080396909	87.732	0.71381	87.732	87.441	88.154	0					24	13	3	0	0	0	0.011451	1	32175	32175		107.19	72.785	1	3717900			3024	6228;10614	1954	1977	2947	2947					0.0636916268015284
ALNNLLHSL	9	Unmodified	_ALNNLLHSL_					0	0	0		ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF	ENSG00000157106|ENST00000446231|SMG1;ENST00000522480.5_1_16:21475086-21478634:-|nuORF	ENSG00000157106|ENST00000446231|SMG1	MULTI-SECPEP	A375_MHC_IP_R2	2	498.18731689453125	2	497.787641	993.56073	-0.37494	-0.00018664	-0.14833	-7.3839E-05	-0.52327	-0.00026048	497.787384930949	86.672	0.86536	87.405	87.151	88.017	0.73301					31	16	3	0	0	0	0.01091	1	32936	32936		131.27	87.409	1	3880500			3025	6228;10614	1954	1977	2948	2948					0.0636916268015284
ALNPADITV	9	Unmodified	_ALNPADITV_					0	0	0		ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;ENST00000478389.5_1_20:57565995-57566166:+|nuORF	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	457.6526794433594	2	457.2531	912.491647	-0.3318	-0.00015171	-0.53926	-0.00024658	-0.87106	-0.00039829	457.25299257859575	87.184	0.71127	87.184	86.831	87.542	0					36	13	4	0	0	0	0.01574	1	31961	31961		88.904	30.225	1	3914100			3026	2257	1955	1978	2949	2949					0.03190078660566087
ALNPADITV	9	Unmodified	_ALNPADITV_					0	0	0		ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;ENST00000478389.5_1_20:57565995-57566166:+|nuORF	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	457.6529541015625	2	457.2531	912.491647	-0.14739	-6.7395E-05	-0.61911	-0.00028309	-0.7665	-0.00035048	457.253083763901	86.492	0.76653	87.225	86.845	87.612	0.733					40	14	5	0	0	0	0.009271	1	32857	32857		103.75	38.513	1	5136400			3027	2257	1955	1978	2950	2950					0.03190078660566087
ALNPECNSV	9	Unmodified	_ALNPECNSV_					0	0	0		ENSG00000170500|ENST00000393437|LONRF2;nc|ENSG00000170500|Q1L5Z9-2|LONRF2	ENSG00000170500|ENST00000393437|LONRF2	ENSG00000170500|ENST00000393437|LONRF2	MULTI-MSMS	A375_MHC_IP_R2	2	474.1182556152344	2	473.718567	945.422581	-0.57969	-0.00027461	-0.43416	-0.00020567	-1.0138	-0.00048028	473.71851194739116	44.414	0.66012	45.183	44.934	45.594	0.7691					18	12	2	0	0	0	0.32899	1	16603	16603		28.487	9.0478	1	1552500			3028	7513	1956	1979	2951	2951					-0.052313286306457485
ALNPELVQA	9	Unmodified	_ALNPELVQA_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-SECPEP	A375_MHC_IP_R1	1	478.1664123535156	2	477.766374	953.518196	-0.3924	-0.00018747	0.16354	7.8136E-05	-0.22885	-0.00010934	477.7665069361527	68.796	0.60786	68.796	68.565	69.173	0					23	11	3	0	0	0	0.14572	1	24960	24960		53.833	22.564	1	3726000			3029	2654	1957	1980	2952	2952					0.0395776755190127
ALNPELVQA	9	Unmodified	_ALNPELVQA_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-SECPEP	A375_MHC_IP_R2	2	478.16607666015625	2	477.766374	953.518196	-0.44409	-0.00021217	-0.38827	-0.0001855	-0.83236	-0.00039767	477.76632750655966	68.047	0.81281	68.782	68.459	69.272	0.73511					27	15	3	0	0	0	0.061442	1	25769	25769		63.961	7.7835	1	4160800			3030	2654	1957	1980	2953	2953					0.0395776755190127
ALNRRILLPH	10	Unmodified	_ALNRRILLPH_					0	0	0			REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2	REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MSMS	A375_MHC_IP_R1	1	601.87939453125	2	601.877656	1201.74076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.46	1	121.46	120.96	121.96	0								0	0	0	0.15522	1	45103	45103		1.6526	1.1943	1		+		3031	17302	1958	1981	2954	2954					0.14795886407796388
ALNSKILSV	9	Unmodified	_ALNSKILSV_					0	0	0		ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	MULTI-SECPEP	A375_MHC_IP_R1	1	473.1924133300781	2	472.792392	943.570232	-0.48179	-0.00022779	0.13986	6.6124E-05	-0.34193	-0.00016166	472.7923647798704	61.165	0.76395	61.165	60.618	61.382	0					25	14	3	0	0	0	0.090157	1	22036	22036		59.368	9.4354	1	3271000			3032	2572	1959	1982	2955	2955					0.09618930965677919
ALNSKILSV	9	Unmodified	_ALNSKILSV_					0	0	0		ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	MULTI-SECPEP	A375_MHC_IP_R2	2	473.19195556640625	2	472.792392	943.570232	-0.89872	-0.00042491	0.25703	0.00012152	-0.64169	-0.00030338	472.7924238710029	60.184	0.86515	60.931	60.4	61.265	0.74714					29	16	2	0	0	0	0.053555	1	22755	22755		71.708	13.029	1	4469400			3033	2572	1959	1982	2956	2956					0.09618930965677919
ALNSQKKQL	9	Unmodified	_ALNSQKKQL_					0	0	0			REV__nc|ENSG00000109686|Q5HYK7-5|SH3D19	REV__nc|ENSG00000109686|Q5HYK7-5|SH3D19	MULTI-MSMS	A375_MHC_IP_R1	1	515.7057495117188	2	515.306198	1028.59784	-0.055632	-2.8667E-05	-0.47456	-0.00024454	-0.53019	-0.00027321	515.3059218152029	49.209	1.2199	49.209	48.933	50.153	0					58	23	4	0	0	0	0.34064	1	17576	17576		27.629	0.74515	1	91571000	+		3034	17591	1960	1983	2957	2957					0.08468834225891442
ALPAPKQEV	9	Unmodified	_ALPAPKQEV_					0	0	0		nc|ENSG00000006118|Q24JP5-4|TMEM132A;ENSG00000006118|ENST00000453848|TMEM132A;nc|ENSG00000006118|Q24JP5-2|TMEM132A	nc|ENSG00000006118|Q24JP5-4|TMEM132A	nc|ENSG00000006118|Q24JP5-4|TMEM132A	MULTI-SECPEP	A375_MHC_IP_R1	1	477.161865234375	2	476.776742	951.538931	-0.43065	-0.00020532	0.055067	2.6255E-05	-0.37558	-0.00017907	476.77679449210206	82.224	2.3325	82.224	80.541	82.874	0					62	45	2	0	0	0	0.56939	1	30306	30306		13.508	0	1	1351100			3035	908	1961	1984	2958	2958					0.06122357931565148
ALPDLTKVI	9	Unmodified	_ALPDLTKVI_					0	0	0		ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MULTI-SECPEP	A375_MHC_IP_R1	1	485.7019348144531	2	485.302593	968.590633	-0.21226	-0.00010301	-0.11142	-5.4075E-05	-0.32368	-0.00015708	485.302469282707	102.42	0.60516	102.42	102.15	102.76	0					29	11	3	0	0	0	0.074405	1	37608	37608		79.596	37.757	1	5269000			3036	2384	1962	1985	2959	2959					0.10508101625475774
ALPDLTKVI	9	Unmodified	_ALPDLTKVI_					0	0	0		ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MULTI-SECPEP	A375_MHC_IP_R2	2	485.7020263671875	2	485.302593	968.590633	-0.52178	-0.00025322	0.24677	0.00011976	-0.27501	-0.00013346	485.3026146292662	101.57	0.60918	102.34	102.01	102.62	0.76428					25	11	3	0	0	0	0.048303	1	38486	38486		83.429	37.408	1	7398600			3037	2384	1962	1985	2960	2960					0.10508101625475774
ALPDNSAGV	9	Unmodified	_ALPDNSAGV_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-SECPEP	A375_MHC_IP_R1	1	422.614013671875	2	422.213975	842.413397	-0.063908	-2.6983E-05	0.16213	6.8452E-05	0.098219	4.1469E-05	422.21400660305517	40.14	0.71452	40.14	39.794	40.509	0					30	13	3	0	0	0	0.096726	1	13751	13751		61.357	25.23	1	7105300			3038	2223	1963	1986	2961	2961					-0.01411353924663672
ALPDNSAGV	9	Unmodified	_ALPDNSAGV_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-SECPEP	A375_MHC_IP_R2	2	422.62255859375	2	422.213975	842.413397	-0.18416	-7.7753E-05	0.082257	3.473E-05	-0.1019	-4.3023E-05	422.213963758429	39.419	0.76254	40.194	39.863	40.626	0.77451					31	14	3	0	0	0	0.20567	1	14607	14607		54.774	34.32	1	11546000			3039	2223	1963	1986	2962	2962					-0.01411353924663672
ALPDQGIAKA	10	Unmodified	_ALPDQGIAKA_					0	0	0		ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	492.4773864746094	2	492.279649	982.544745	-0.34887	-0.00017174	-0.06421	-3.1609E-05	-0.41308	-0.00020335	492.279570314272	34.633	0.76185	34.633	34.405	35.167	0					42	14	5	0	0	0	0.12766	1	11377	11377		79.596	57.85	1	64945000			3040	1926	1964	1987	2963	2963					0.052774564432297666
ALPDQGIAKA	10	Unmodified	_ALPDQGIAKA_					0	0	0		ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	492.67919921875	2	492.279649	982.544745	-0.96987	-0.00047745	0.0038749	1.9076E-06	-0.966	-0.00047554	492.27965584435765	33.962	1.0155	34.714	34.399	35.414	0.75225					49	19	5	0	0	0	0.055108	1	12154	12154		96.936	53.077	1	63084000			3041	1926	1964	1987	2964	2964					0.052774564432297666
ALPDSMVSV	9	Unmodified	_ALPDSMVSV_					0	0	0		nc|ENSG00000188554|Q14596-2|NBR1;ENSG00000188554|ENST00000590996|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	MULTI-MSMS	A375_MHC_IP_R1	1	918.8597412109375	1	918.460095	917.452819	-0.30146	-0.00027688	0.048396	4.445E-05	-0.25306	-0.00023243	918.4600259614454	85.286	0.55914	85.286	85.005	85.565	0					17	10	2	0	0	0	0.034481	1	31274	31274		71.134	29.039	1	2458000			3042	8914	1965	1988	2965	2965					-0.00920969965443419
ALPDSMVSV	9	Unmodified	_ALPDSMVSV_					0	0	0		nc|ENSG00000188554|Q14596-2|NBR1;ENSG00000188554|ENST00000590996|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	MULTI-SECPEP	A375_MHC_IP_R2	2	917.8380737304688	1	918.460095	917.452819	-0.23093	-0.0002121	0.11381	0.00010453	-0.11712	-0.00010757	918.4599076854508	84.537	0.60727	85.273	85.018	85.626	0.73601					18	11	2	0	0	0	0.47368	1	32213	32213		34.102	10.954	1	2194900			3043	8914	1965	1988	2966	2966					-0.00920969965443419
ALPDSRILY	9	Unmodified	_ALPDSRILY_					0	0	0			REV__nc|ENSG00000107147|Q5JUK3-4|KCNT1	REV__nc|ENSG00000107147|Q5JUK3-4|KCNT1	MSMS	A375_MHC_IP_R2	2	524.3748779296875	2	524.295299	1046.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.896	1	70.63	70.13	71.13	0.73421								0	0	0	0.15486	1	26495	26495		12.532	0	1		+		3044	17475	1966	1989	2967	2967					0.05462029477325814
ALPEDLVEV	9	Unmodified	_ALPEDLVEV_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3;nc|ENSG00000136167|P13796-2|LCP1;ENSG00000136167|ENST00000323076|LCP1	nc|ENSG00000102024|P13797-3|PLS3	nc|ENSG00000102024|P13797-3|PLS3	MULTI-SECPEP	A375_MHC_IP_R1	1	493.15399169921875	2	492.76604	983.517527	-0.084297	-4.1539E-05	0.10405	5.1271E-05	0.01975	9.732E-06	492.7660227574992	108.14	1.574	108.14	107.44	109.02	0					57	30	3	0	0	0	0.3607	1	39540	39540		42.095	13.608	1	2154500			3045	2350	1967	1990	2968	2968					0.025109281121899585
ALPEDLVEV	9	Unmodified	_ALPEDLVEV_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3;nc|ENSG00000136167|P13796-2|LCP1;ENSG00000136167|ENST00000323076|LCP1	nc|ENSG00000102024|P13797-3|PLS3	nc|ENSG00000102024|P13797-3|PLS3	MULTI-SECPEP	A375_MHC_IP_R2	2	493.15386962890625	2	492.76604	983.517527	-0.56082	-0.00027635	-0.10904	-5.373E-05	-0.66986	-0.00033008	492.7659069699056	107.46	1.4261	108.21	107.49	108.92	0.75436					50	27	3	0	0	0	0.43707	1	40395	40395		28.487	11.545	1	2242300			3046	2350	1967	1990	2969	2969					0.025109281121899585
ALPEIFTEL	9	Unmodified	_ALPEIFTEL_					0	0	0		ENSG00000130741|ENST00000253039|EIF2S3;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000130741|ENST00000253039|EIF2S3	ENSG00000130741|ENST00000253039|EIF2S3	MULTI-SECPEP	A375_MHC_IP_R1	1	517.1837768554688	2	516.784233	1031.55391	-0.75447	-0.0003899	-0.70523	-0.00036445	-1.4597	-0.00075435	516.7838364488217	130.54	0.40674	130.54	130.41	130.82	0					23	7	5	0	0	0	0.011031	1	50259	50259		108	37.282	1	701340000			3047	4276	1968	1991	2970	2970					0.039398050088948366
ALPEIFTEL	9	Unmodified	_ALPEIFTEL_					0	0	0		ENSG00000130741|ENST00000253039|EIF2S3;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000130741|ENST00000253039|EIF2S3	ENSG00000130741|ENST00000253039|EIF2S3	MULTI-MSMS	A375_MHC_IP_R2	2	1033.462890625	1	1032.56119	1031.55391	0.026988	2.7867E-05	-0.19041	-0.00019661	-0.16342	-0.00016875	1032.5608932472705	130.36	0.71141	130.58	130.4	131.11	0.2142					32	13	5	0	0	0	0.010037	1	51275	51275		96.285	38.813	1	919980000			3048	4276	1968	1991	2971	2971					0.039398050088948366
ALPEIFTEL	9	Unmodified	_ALPEIFTEL_					0	0	0		ENSG00000130741|ENST00000253039|EIF2S3;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000130741|ENST00000253039|EIF2S3	ENSG00000130741|ENST00000253039|EIF2S3	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1836547851562	2	516.784233	1031.55391	-0.77146	-0.00039868	0.10725	5.5427E-05	-0.66421	-0.00034325	516.7842567806829	130.36	0.91414	130.58	130.4	131.31	0.2142					37	17	5	0	0	0	0.011031	1	51226	51226		120.45	49.735	1	766610000			3049	4276	1968	1991	2972	2972					0.039398050088948366
ALPEIFTEL	9	Unmodified	_ALPEIFTEL_					0	0	0		ENSG00000130741|ENST00000253039|EIF2S3;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000130741|ENST00000253039|EIF2S3	ENSG00000130741|ENST00000253039|EIF2S3	MULTI-MATCH	A375_MHC_IP_R1	1		1	1032.56119	1031.55391	-0.05305	-5.4777E-05	-0.71679	-0.00074013	-0.76984	-0.00079491	1032.5603526465727	130.59	0.40674	130.59	130.41	130.82	0	0.0073887	-0.00024508	NaN	96.285	21	7	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	964430000			3050	4276	1968	1991							0.039398050088948366
ALPENPPAI	9	Unmodified	_ALPENPPAI_					0	0	0		ENST00000582341.1_1_17:73038242-73038745:-|nuORF;nc|ENSG00000167863|O75947-2|ATP5PD;ENSG00000167863|ENST00000301587|ATP5PD	ENST00000582341.1_1_17:73038242-73038745:-|nuORF	ENST00000582341.1_1_17:73038242-73038745:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	461.65557861328125	2	461.255643	920.496732	-0.10633	-4.9047E-05	-0.25692	-0.00011851	-0.36325	-0.00016755	461.2555086450434	72.499	0.60953	72.499	72.22	72.83	0					20	11	2	0	0	0	0.41409	1	26347	26347		24.021	4.7636	1	3172500			3051	7230	1969	1992	2973	2973					0.033303825231769224
ALPENPPAI	9	Unmodified	_ALPENPPAI_					0	0	0		ENST00000582341.1_1_17:73038242-73038745:-|nuORF;nc|ENSG00000167863|O75947-2|ATP5PD;ENSG00000167863|ENST00000301587|ATP5PD	ENST00000582341.1_1_17:73038242-73038745:-|nuORF	ENST00000582341.1_1_17:73038242-73038745:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	461.6554260253906	2	461.255643	920.496732	-0.67095	-0.00030948	-1.4955	-0.0006898	-2.1664	-0.00099928	461.25468203138286	72.067	1.1138	72.801	72.264	73.377	0.7342					33	21	3	0	0	0	0.082375	1	27251	27251		53.833	9.9745	1	3802600			3052	7230	1969	1992	2974	2974					0.033303825231769224
ALPEVQKQV	9	Unmodified	_ALPEVQKQV_					0	0	0		ENST00000405489.7_2_2:27435269-27435350:+|nuORF	ENST00000405489.7_2_2:27435269-27435350:+|nuORF	ENST00000405489.7_2_2:27435269-27435350:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	505.94342041015625	2	506.295299	1010.57605	-0.41	-0.00020758	0.01859	9.4118E-06	-0.39141	-0.00019817	506.2952865874696	37.049	0.76037	37.049	36.745	37.505	0					34	14	4	0	0	0	0.22013	1	12483	12483		36.506	12.486	1	17067000			3053	11591	1970	1993	2975	2975					0.0711802947733986
ALPEVQKQV	9	Unmodified	_ALPEVQKQV_					0	0	0		ENST00000405489.7_2_2:27435269-27435350:+|nuORF	ENST00000405489.7_2_2:27435269-27435350:+|nuORF	ENST00000405489.7_2_2:27435269-27435350:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	505.608642578125	2	506.295299	1010.57605	-0.87643	-0.00044373	0.053202	2.6936E-05	-0.82323	-0.0004168	506.29525408805	36.258	0.71315	37.029	36.646	37.359	0.7709					35	13	5	0	0	0	0.14572	1	13206	13206		53.833	13.875	1	22290000			3054	11591	1970	1993	2976	2976					0.0711802947733986
ALPGGAGPK	9	Unmodified	_ALPGGAGPK_					0	0	0			REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	MULTI-MSMS	A375_MHC_IP_R1	1	768.3538208007812	1	767.441015	766.433738	-0.83742	-0.00064267	1.1108	0.00085248	0.2734	0.00020982	767.4416262480999	143.47	0.59094	143.47	143.29	143.89	0					21	11	3	0	0	0	0.75764	1	55029	55029		1.8442	1.0506	1	6396200	+		3055	18720	1971	1994	2977	2977					0.041178615257990714
ALPGQRVP	8	Unmodified	_ALPGQRVP_					0	0	0		ENST00000366756.3_1_6:170597857-170599216:-|nuORF	ENST00000366756.3_1_6:170597857-170599216:-|nuORF	ENST00000366756.3_1_6:170597857-170599216:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	419.6504211425781	2	419.250695	836.486836	-0.61558	-0.00025808	0.42644	0.00017878	-0.18915	-7.93E-05	419.250852328572	33.726	0.50628	34.479	34.196	34.702	0.75225					21	9	3	0	0	0	0.86765	1	12099	12099		32.117	3.6301	1	9318500			3056	11067	1972	1995	2978	2978					0.06205239308462751
ALPKEDPTAV	10	Unmodified	_ALPKEDPTAV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-SECPEP	A375_MHC_IP_R1	1	521.1842041015625	2	520.784764	1039.55498	-0.29305	-0.00015262	-0.47402	-0.00024686	-0.76707	-0.00039948	520.784417535963	35.721	0.71353	35.721	35.269	35.982	0					27	13	3	0	0	0	0.36543	1	11901	11901		57.249	19.275	1	6882200			3057	8361	1973	1996	2979	2979					0.036780193777985914
ALPKEDPTAV	10	Unmodified	_ALPKEDPTAV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-SECPEP	A375_MHC_IP_R2	2	521.1841430664062	2	520.784764	1039.55498	-0.85384	-0.00044467	-0.29447	-0.00015335	-1.1483	-0.00059802	520.7846076409552	35.024	0.45447	35.788	35.576	36.03	0.76338					15	8	2	0	0	0	0.41513	1	12670	12670		53.404	15.43	1	5685600			3058	8361	1973	1996	2980	2980					0.036780193777985914
ALPLAHKLY	9	Unmodified	_ALPLAHKLY_					0	0	0			REV__ENST00000452891.5_1_2:242440235-242447450:-|nuORF	REV__ENST00000452891.5_1_2:242440235-242447450:-|nuORF	MSMS	A375_MHC_IP_R1	1	513.4312133789062	2	513.310752	1024.60695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.985	1	76.985	76.485	77.485	0								0	0	0	0.15486	1	28071	28071		8.5933	0.68312	1		+		3059	24791	1974	1997	2981	2981					0.09563227582248146
ALPLGLPGPV	10	Unmodified	_ALPLGLPGPV_					0	0	0		ENST00000585051.1_1_17:45897093-45897692:-|nuORF	ENST00000585051.1_1_17:45897093-45897692:-|nuORF	ENST00000585051.1_1_17:45897093-45897692:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	467.6923522949219	2	467.292028	932.569503	-0.033209	-1.5519E-05	0.038739	1.8102E-05	0.0055295	2.5839E-06	467.29202112706935	107.91	1.3245	107.91	107.08	108.41	0					54	25	3	0	0	0	0.67143	1	39439	39439		18.135	0	1	5384000			3060	13711	1975	1998	2982	2982					0.10052136316619453
ALPLLEQKQVI	11	Unmodified	_ALPLLEQKQVI_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MULTI-SECPEP	A375_MHC_IP_R1	1	418.1579284667969	3	417.927218	1250.75982	0.056108	2.3449E-05	0.09385	3.9222E-05	0.14996	6.2672E-05	417.9271982860569	52.603	1.4701	52.603	52.085	53.555	0					38	28	2	0	0	0	0.99493	1	18716	18716		3.0723	0	1	2599700			3061	3964	1976	1999	2983	2983					0.14447378188174298
ALPLLRAQ	8	Unmodified	_ALPLLRAQ_					0	0	0		ENST00000373142.5_1_9:130648986-130649796:-|nuORF	ENST00000373142.5_1_9:130648986-130649796:-|nuORF	ENST00000373142.5_1_9:130648986-130649796:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	441.68194580078125	2	441.281995	880.549437	-0.10491	-4.6295E-05	0.33542	0.00014802	0.23051	0.00010172	441.2820697238224	73.462	0.70937	73.462	73.285	73.995	0					21	13	2	0	0	0	0.86765	1	26786	26786		18.135	4.6271	1	1773000			3062	11224	1977	2000	2984	2984					0.10438385376653514
ALPLNQEPKY	10	Unmodified	_ALPLNQEPKY_					0	0	0		ENST00000367607.7_2_1:180082752-180082971:+|nuORF	ENST00000367607.7_2_1:180082752-180082971:+|nuORF	ENST00000367607.7_2_1:180082752-180082971:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	391.60137939453125	3	391.548518	1171.62372	0.29431	0.00011524	-0.34366	-0.00013456	-0.049343	-1.932E-05	391.54835624937544	54.389	0.35343	54.389	54.113	54.467	0					10	6	2	0	0	0	0.71693	1	19362	19362		4.7159	0.18705	1	1655200			3063	11096	1978	2001	2985	2985					0.04477683677509958
ALPPKPRFL	9	Unmodified	_ALPPKPRFL_					0	0	0		ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	MULTI-SECPEP	A375_MHC_IP_R1	1	520.226318359375	2	519.826569	1037.63859	-0.53826	-0.0002798	0.090955	4.7281E-05	-0.4473	-0.00023252	519.8265820409139	52.546	2.3349	52.546	51.119	53.453	0					67	45	2	0	0	0	0.65246	1	18629	18629		15.847	10.617	1	2259400			3064	7660	1979	2002	2986	2986					0.12127220336174105
ALPPKPRFL	9	Unmodified	_ALPPKPRFL_					0	0	0		ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	MULTI-SECPEP	A375_MHC_IP_R2	2	520.2261962890625	2	519.826569	1037.63859	-0.87171	-0.00045314	0.022957	1.1934E-05	-0.84875	-0.0004412	519.8265143426192	51.565	2.1785	52.318	51.106	53.285	0.75225					71	42	2	0	0	0	0.65246	1	19352	19352		15.847	11.091	1	2745800			3065	7660	1979	2002	2987	2987					0.12127220336174105
ALPPLYSCP	9	Unmodified	_ALPPLYSCP_					0	0	0		nc|ENSG00000136883|Q96FN5|KIF12;ENSG00000136883|ENST00000640217|KIF12	nc|ENSG00000136883|Q96FN5|KIF12	nc|ENSG00000136883|Q96FN5|KIF12	MULTI-SECPEP	A375_MHC_IP_R1	1	481.14678955078125	2	480.746596	959.478639	-0.67552	-0.00032475	1.0398	0.00049987	0.36426	0.00017512	480.74704450040434	135	0.20341	135	134.88	135.08	0					8	3	3	0	0	0	0.75466	1	52071	52071		12.532	0	1	3195100			3066	4837	1980	2003	2988	2988					-0.002720757231713833
ALPPQHAL	8	Unmodified	_ALPPQHAL_					0	0	0			REV__ENST00000564184.1_1_15:72455114-72459029:-|nuORF	REV__ENST00000564184.1_1_15:72455114-72459029:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	423.6207275390625	2	423.745245	845.475937	-0.41033	-0.00017388	-0.21729	-9.2074E-05	-0.62762	-0.00026595	423.7450771267097	139.17	0.25171	139.17	139.06	139.32	0					6	4	2	0	0	0	0.972	1	53520	53520		0.79363	0	1	507130	+		3067	26212	1981	2004	2989	2989					0.047018369341685684
ALPPVLTTV	9	Unmodified	_ALPPVLTTV_					0	0	0		ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	MULTI-MSMS	A375_MHC_IP_R1	1	456.183837890625	2	455.784036	909.553519	-0.007094	-3.2333E-06	0.17483	7.9683E-05	0.16773	7.6449E-05	455.7840498763498	109.09	1.9799	109.09	108.51	110.49	0					89	38	4	0	0	0	0.015336	1	39888	39888		89.427	18.711	1	63507000			3068	6144	1982	2005	2990	2990					0.09512430079689693
ALPPVLTTV	9	Unmodified	_ALPPVLTTV_					0	0	0		ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	MULTI-MSMS	A375_MHC_IP_R1	1	910.9601440429688	1	910.560795	909.553519	0.1092	9.943E-05	0.17156	0.00015622	0.28076	0.00025564	910.5608703583371	109.09	1.6752	109.09	108.51	110.19	0					84	32	4	0	0	0	0.13491	1	40329	40329		44.407	15.92	1	101130000			3069	6144	1982	2005	2991	2991					0.09512430079689693
ALPRRHGT	8	Unmodified	_ALPRRHGT_					0	0	0		ENST00000524906.5_2_8:144650334-144651020:-|nuORF	ENST00000524906.5_2_8:144650334-144651020:-|nuORF	ENST00000524906.5_2_8:144650334-144651020:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	454.6661376953125	2	454.264668	906.514782	-0.13227	-6.0085E-05	0.86923	0.00039486	0.73696	0.00033477	454.26601039976595	62.758	1.3322	62.758	62.454	63.786	0					38	25	3	0	0	0	0.75805	1	22697	22697		18.135	18.135	1	1807600			3070	13062	1983	2006	2992	2992					0.0577856228857172
ALPRRILG	8	Unmodified	_ALPRRILG_					0	0	0		ENST00000598809.5_1_19:50529209-50534310:+|nuORF	ENST00000598809.5_1_19:50529209-50534310:+|nuORF	ENST00000598809.5_1_19:50529209-50534310:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	448.6950378417969	2	448.295436	894.57632	-0.68257	-0.00030599	0.093149	4.1758E-05	-0.58942	-0.00026423	448.29540322143265	38.601	0.45811	39.376	39.098	39.556	0.77451					13	8	2	0	0	0	0.972	1	14247	14247		0.69038	0	1	3990100			3071	13854	1984	2007	2993	2993					0.1248149398785472
ALPTVLVGV	9	Unmodified	_ALPTVLVGV_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	A375_MHC_IP_R1	1	869.2799072265625	1	868.550231	867.542954	-0.19686	-0.00017098	-0.15688	-0.00013626	-0.35374	-0.00030724	868.5501601773997	118.28	0.45665	118.28	117.92	118.37	0					14	8	2	0	0	0	0.015336	1	43481	43481		89.427	11.442	1	20281000			3072	1777	1985	2008	2994	2994					0.10388447425282266
ALPTVLVGV	9	Unmodified	_ALPTVLVGV_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MATCH	A375_MHC_IP_R2	2		1	868.550231	867.542954	-0.45163	-0.00039226	0.88277	0.00076673	0.43114	0.00037447	868.5509901530886	117.33	0.55676	117.99	117.68	118.24	0.65961	-0.1446	0.00070293	NaN	89.427	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20064000			3073	1777	1985	2008							0.10388447425282266
ALQAPHVLS	9	Unmodified	_ALQAPHVLS_					0	0	0		ENST00000561302.5_1_15:76430142-76521275:+|nuORF;nc|ENSG00000169758|Q2M3C6-2|TMEM266;ENSG00000169758|ENST00000388942|TMEM266	ENST00000561302.5_1_15:76430142-76521275:+|nuORF	ENST00000561302.5_1_15:76430142-76521275:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	467.62200927734375	2	468.269084	934.523616	-0.80849	-0.00037859	0.24417	0.00011434	-0.56432	-0.00026426	468.2692892241994	65.762	0.4053	66.5	66.172	66.577	0.73811					10	7	2	0	0	0	0.75466	1	24888	24888		4.3292	0	1	783950			3074	7435	1986	2009	2995	2995					0.05373491134378128
ALQCEVSDPE	10	Unmodified	_ALQCEVSDPE_					0	0	0		nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.R4794Afs*50|1|0.26|ENSG00000154358|chr1:228319130-228319130|C/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.C2753Afs*104|1|0.16|ENSG00000154358|chr1:228281992-228282004|TGCAGCTTTGAGT/-|frameshift_variant;OBSCN|p.V3655Wfs*18|1|0.18|ENSG00000154358|chr1:228293443-228293443|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9-3|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	A375_MHC_IP_R2	2	545.7052001953125	2	545.739696	1089.46484	-0.62406	-0.00034057	2.2292	0.0012166	1.6052	0.00087601	546.2420818693275	85.793	0.55871	86.529	86.239	86.797	0.73601					17	10	2	0	0	0	0.70329	1	32527	32527		10.824	4.1008	1	3824000			3075	14690	1987	2010	2996	2996					-0.07631398012927093
ALQDEVAHT	9	Unmodified	_ALQDEVAHT_					0	0	0		ENST00000557552.1_1_14:105241211-105241541:-|nuORF	ENST00000557552.1_1_14:105241211-105241541:-|nuORF	ENST00000557552.1_1_14:105241211-105241541:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	492.1926574707031	2	492.243264	982.471974	-0.52952	-0.00026065	0.019786	9.7393E-06	-0.50974	-0.00025091	492.2432430345752	31.843	0.65936	32.58	32.198	32.857	0.73692					26	12	3	0	0	0	0.6656	1	11171	11171		10.074	2.1638	1	5558200			3076	13453	1988	2011	2997	2997					-0.019962973501833403
ALQDRVDSL	9	Unmodified	_ALQDRVDSL_					0	0	0		ENSG00000058453|ENST00000375541|CROCC;nc|ENSG00000058453|Q5TZA2-2|CROCC	ENSG00000058453|ENST00000375541|CROCC	ENSG00000058453|ENST00000375541|CROCC	MULTI-SECPEP	A375_MHC_IP_R1	1	507.97998046875	2	508.772188	1015.52982	-0.33428	-0.00017007	-0.080171	-4.0789E-05	-0.41446	-0.00021086	508.7722611133771	62.166	1.1779	62.166	61.891	63.069	0					49	22	3	0	0	0	0.67483	1	22551	22551		6.2058	0	1	10480000			3077	1293	1989	2012	2998	2998					0.022679645752418764
ALQEALENA	9	Unmodified	_ALQEALENA_					0	0	0		ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-SECPEP	A375_MHC_IP_R1	1	480.171142578125	2	479.745639	957.476725	-0.45259	-0.00021713	-0.3961	-0.00019003	-0.84869	-0.00040715	479.7454942341088	54.972	0.45715	54.972	54.822	55.279	0					11	8	2	0	0	0	0.49205	1	19747	19747		27.629	20.527	1	1569100			3078	3161	1990	2013	2999	2999					-0.003714132074264853
ALQEALENA	9	Unmodified	_ALQEALENA_					0	0	0		ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	A375_MHC_IP_R2	2	480.1709289550781	2	479.745639	957.476725	-0.79449	-0.00038115	-0.38449	-0.00018446	-1.179	-0.00056561	479.7452962025835	54.377	0.45435	55.128	54.865	55.32	0.75075					11	8	2	0	0	0	0.070818	1	20523	20523		56.177	21.775	1	1310000			3079	3161	1990	2013	3000	3000					-0.003714132074264853
ALQEKIEEL	9	Unmodified	_ALQEKIEEL_					0	0	0		ENSG00000185532|ENST00000373980|PRKG1	ENSG00000185532|ENST00000373980|PRKG1	ENSG00000185532|ENST00000373980|PRKG1	MULTI-SECPEP	A375_MHC_IP_R1	1	537.197509765625	2	536.797872	1071.58119	-0.60552	-0.00032504	-0.51439	-0.00027612	-1.1199	-0.00060116	536.797599166697	56.041	0.91424	56.041	55.381	56.295	0					23	11	3	0	0	0	0.048303	1	19820	19820		83.429	14.324	1	9409200			3080	8674	1991	2014	3001	3001					0.04826288549293167
ALQEKIEEL	9	Unmodified	_ALQEKIEEL_					0	0	0		ENSG00000185532|ENST00000373980|PRKG1	ENSG00000185532|ENST00000373980|PRKG1	ENSG00000185532|ENST00000373980|PRKG1	MULTI-SECPEP	A375_MHC_IP_R1	1	537.197509765625	2	536.797872	1071.58119	-0.67942	-0.00036471	-1.5237	-0.00081793	-2.2031	-0.0011826	536.7973006580963	55.438	0.66412	55.438	55.177	55.841	0					26	12	4	0	0	0	0.048303	1	19820	19820		83.429	14.324	1	5654400			3081	8674	1991	2014	3002	3002					0.04826288549293167
ALQEKIEEL	9	Unmodified	_ALQEKIEEL_					0	0	0		ENSG00000185532|ENST00000373980|PRKG1	ENSG00000185532|ENST00000373980|PRKG1	ENSG00000185532|ENST00000373980|PRKG1	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1971435546875	2	536.797872	1071.58119	-1.0659	-0.00057219	-0.73353	-0.00039376	-1.7995	-0.00096594	536.7975519887771	54.627	0.61062	55.378	55.118	55.729	0.75075					18	11	2	0	0	0	0.01147	1	20617	20617		110.55	21.599	1	6907400			3082	8674	1991	2014	3003	3003					0.04826288549293167
ALQEKLQYL	9	Unmodified	_ALQEKLQYL_					0	0	0		ENSG00000142459|ENST00000538904|EVI5L;nc|ENSG00000142459|Q96CN4|EVI5L	ENSG00000142459|ENST00000538904|EVI5L	ENSG00000142459|ENST00000538904|EVI5L	MULTI-SECPEP	A375_MHC_IP_R2	2	552.6774291992188	2	553.316232	1104.61791	-0.71242	-0.00039419	0.50358	0.00027864	-0.20885	-0.00011556	553.8178907480029	63.758	0.40687	64.498	64.241	64.648	0.74022					10	7	2	0	0	0	0.49205	1	24187	24187		16.149	0.90062	1	1191100			3083	5309	1992	2015	3004	3004					0.06978585165848017
ALQEKLWNV	9	Unmodified	_ALQEKLWNV_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;ENST00000533180.1_1_11:77612465-77632469:-|nuORF	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2081909179688	2	550.808574	1099.60259	-0.54918	-0.00030249	0.073371	4.0413E-05	-0.47581	-0.00026208	550.8085743277048	73.872	0.65794	73.872	73.539	74.197	0					31	12	4	0	0	0	0.011191	1	26874	26874		133.05	66.596	1	8799600			3084	5794	1993	2016	3005	3005					0.05677718368656315
ALQEKLWNV	9	Unmodified	_ALQEKLWNV_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;ENST00000533180.1_1_11:77612465-77632469:-|nuORF	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-SECPEP	A375_MHC_IP_R2	2	551.2081909179688	2	550.808574	1099.60259	-0.78702	-0.0004335	0.31345	0.00017265	-0.47357	-0.00026085	550.8086667964932	73.073	0.56118	73.808	73.48	74.041	0.73541					31	10	4	0	0	0	0.011418	1	27701	27701		125.04	75.105	1	8372000			3085	5794	1993	2016	3006	3006					0.05677718368656315
ALQEKVQAV	9	Unmodified	_ALQEKVQAV_					0	0	0		ENSG00000165660|ENST00000298492|ABRAXAS2	ENSG00000165660|ENST00000298492|ABRAXAS2	ENSG00000165660|ENST00000298492|ABRAXAS2	MULTI-SECPEP	A375_MHC_IP_R1	1	493.6872863769531	2	493.287474	984.560395	-0.67162	-0.0003313	-0.021955	-1.083E-05	-0.69358	-0.00034213	493.28743110175725	30.566	0.40442	30.566	30.402	30.806	0					16	7	3	0	0	0	0.011308	1	9716	9716		107.1	35.177	1	4291800			3086	6975	1994	2017	3007	3007					0.06749742960289495
ALQEKVQAV	9	Unmodified	_ALQEKVQAV_					0	0	0		ENSG00000165660|ENST00000298492|ABRAXAS2	ENSG00000165660|ENST00000298492|ABRAXAS2	ENSG00000165660|ENST00000298492|ABRAXAS2	MULTI-MATCH	A375_MHC_IP_R2	2		2	493.287474	984.560395	-0.92184	-0.00045473	-0.10814	-5.3342E-05	-1.03	-0.00050808	493.28740734053775	29.789	0.55475	30.488	30.286	30.84	0.69872	-0.03892	-3.7492E-05	NaN	107.1	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4164800			3087	6975	1994	2017							0.06749742960289495
ALQEMVHQV	9	Unmodified	_ALQEMVHQV_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-SECPEP	A375_MHC_IP_R1	1	528.1709594726562	2	527.771134	1053.52771	-0.55121	-0.00029091	2.441	0.0012883	1.8898	0.00099738	527.7720555796994	47.334	0.46357	47.334	47.003	47.467	0					18	8	4	0	0	0	0.064556	1	16657	16657		93.166	49.308	1	2830100			3088	3034	1995	2018	3008	3008					0.003092125657985889
ALQEMVHQV	9	Unmodified	_ALQEMVHQV_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-SECPEP	A375_MHC_IP_R2	2	528.1708984375	2	527.771134	1053.52771	-0.37062	-0.0001956	0.82287	0.00043429	0.45225	0.00023869	527.7708741138588	46.535	0.40844	47.3	47.058	47.466	0.76519					21	7	4	0	0	0	0.14273	1	17428	17428		74.2	47.316	1	4381100			3089	3034	1995	2018	3009	3009					0.003092125657985889
ALQEMVHQV	9	Oxidation (M)	_ALQEM(Oxidation (M))VHQV_		ALQEM(1)VHQV		ALQEM(46)VHQV	0	0	1		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1683349609375	2	535.768591	1069.52263	-0.86153	-0.00046158	-0.18156	-9.7276E-05	-1.0431	-0.00055886	535.7685409027755	28.956	0.25138	28.956	28.745	28.996	0					7	4	2	0	0	0	0.34746	1	8997	8997		45.7	11.597	1	2253500			3090	3034	1995	2019	3010	3010		145			-0.009350912968329794
ALQESLVQI	9	Unmodified	_ALQESLVQI_					0	0	0		ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	MULTI-SECPEP	A375_MHC_IP_R2	2	501.1871643066406	2	500.787307	999.560061	-0.4641	-0.00023242	0.099497	4.9827E-05	-0.3646	-0.00018259	500.78731826981476	95.724	0.71218	96.475	96.093	96.805	0.75045					25	13	2	0	0	0	0.022401	1	36322	36322		110.67	31.947	1	5734900			3091	8448	1996	2020	3011	3011					0.060263232404167866
ALQEVLKTA	9	Unmodified	_ALQEVLKTA_					0	0	0		ENST00000484616.2_1_6:133135907-133136327:+|nuORF;ENSG00000112306|ENST00000230050|RPS12	ENST00000484616.2_1_6:133135907-133136327:+|nuORF	ENST00000484616.2_1_6:133135907-133136327:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	487.1895751953125	2	486.78985	971.565146	-0.13524	-6.5833E-05	-0.039043	-1.9006E-05	-0.17428	-8.4839E-05	486.789716780996	47.684	2.3845	47.684	45.89	48.274	0					79	46	4	0	0	0	0.18869	1	16764	16764		41.347	5.22	1	6452200			3092	3075	1997	2021	3012	3012					0.07822627103053037
ALQEVLKTA	9	Unmodified	_ALQEVLKTA_					0	0	0		ENST00000484616.2_1_6:133135907-133136327:+|nuORF;ENSG00000112306|ENST00000230050|RPS12	ENST00000484616.2_1_6:133135907-133136327:+|nuORF	ENST00000484616.2_1_6:133135907-133136327:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	487.1893615722656	2	486.78985	971.565146	-0.40912	-0.00019915	-0.16646	-8.1029E-05	-0.57557	-0.00028018	486.78976289459143	46.932	1.4278	47.693	47.104	48.532	0.76128					56	27	4	0	0	0	0.091861	1	17512	17512		55.249	15.009	1	5639300			3093	3075	1997	2021	3013	3013					0.07822627103053037
ALQFMKHW	8	Unmodified	_ALQFMKHW_					0	0	0		ENST00000432673.1_1_6:139013686-139015644:+|nuORF	ENST00000432673.1_1_6:139013686-139015644:+|nuORF	ENST00000432673.1_1_6:139013686-139015644:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	354.2815246582031	3	354.184745	1059.53241	0.070403	2.4936E-05	-0.57378	-0.00020322	-0.50338	-0.00017829	354.1845061150897	42.461	0.35373	42.461	42.233	42.587	0					11	6	2	0	0	0	0.972	1	14674	14674		6.7232	6.7232	1	2322600			3094	11881	1998	2022	3014	3014					0.0050214149919156625
ALQGFQTQV	9	Unmodified	_ALQGFQTQV_					0	0	0		nc|ENSG00000132481|Q96LD4-2|TRIM47;ENST00000587339.2_2_17:73870566-73874273:-|nuORF;ENSG00000132481|ENST00000254816|TRIM47	nc|ENSG00000132481|Q96LD4-2|TRIM47	nc|ENSG00000132481|Q96LD4-2|TRIM47	MULTI-SECPEP	A375_MHC_IP_R2	2	496.6639709472656	2	496.263999	990.513445	-0.55194	-0.00027391	0.12629	6.2671E-05	-0.42566	-0.00021124	496.2641366202883	66.821	0.81262	67.557	67.189	68.001	0.73631					20	15	2	0	0	0	0.087712	1	25308	25308		66.457	44.71	1	2625600			3095	4415	1999	2023	3015	3015					0.017808834091511017
ALQGGLRQV	9	Unmodified	_ALQGGLRQV_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.P1556Afs*122|1|0.27|ENSG00000272333|chr19:35728865-35728866|-/A|frameshift_variant;KMT2B|p.G1602Rfs*76|1|0.53|ENSG00000272333|chr19:35729180-35729181|-/T|frameshift_variant	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MULTI-SECPEP	A375_MHC_IP_R1	1	471.6796875	2	471.279983	940.545414	-0.43853	-0.00020667	-0.069997	-3.2988E-05	-0.50853	-0.00023966	471.27988037916674	34.228	0.35348	34.228	34.052	34.405	0					13	6	3	0	0	0	0.11436	1	11273	11273		58.679	20.705	1	4835600			3096	9990	2000	2024	3016	3016					0.0727629588294576
ALQGGLRQV	9	Unmodified	_ALQGGLRQV_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.P1556Afs*122|1|0.27|ENSG00000272333|chr19:35728865-35728866|-/A|frameshift_variant;KMT2B|p.G1602Rfs*76|1|0.53|ENSG00000272333|chr19:35729180-35729181|-/T|frameshift_variant	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MULTI-MSMS	A375_MHC_IP_R2	2	471.6794738769531	2	471.279983	940.545414	-0.97033	-0.0004573	-0.023029	-1.0853E-05	-0.99336	-0.00046815	471.27989339763	33.417	0.35597	34.169	33.992	34.348	0.75225					12	6	3	0	0	0	0.026268	1	12001	12001		78.149	25.881	1	4544800			3097	9990	2000	2024	3017	3017					0.0727629588294576
ALQGIIHSI	9	Unmodified	_ALQGIIHSI_					0	0	0		nc|ENSG00000169604|Q9H6X2-3|ANTXR1;ENST00000463335.1_1_2:69240622-69330161:+|nuORF;nc|ENSG00000169604|Q9H6X2-4|ANTXR1;nc|ENSG00000169604|Q9H6X2-6|ANTXR1;nc|ENSG00000169604|Q9H6X2-2|ANTXR1;nc|ENSG00000169604|Q9H6X2-5|ANTXR1;ENSG00000169604|ENST00000303714|ANTXR1	nc|ENSG00000169604|Q9H6X2-3|ANTXR1	nc|ENSG00000169604|Q9H6X2-3|ANTXR1	MULTI-SECPEP	A375_MHC_IP_R1	1	476.68463134765625	2	476.284734	950.554916	-0.53591	-0.00025524	0.3289	0.00015665	-0.20701	-9.8594E-05	476.2848706243983	73.566	1.0131	73.566	73.184	74.197	0					29	19	2	0	0	0	0.55359	1	26790	26790		3.5965	0	1	1422900			3098	12212	2001	2025	3018	3018					0.07766064168481535
ALQGLYTTV	9	Unmodified	_ALQGLYTTV_					0	0	0		GLB1|p.G526Afs*74|1|0.18|ENSG00000170266|chr3:33014213-33014213|C/-|frameshift_variant;nc|ENSG00000170266|P16278-3|GLB1;nc|ENSG00000170266|P16278|GLB1;ENSG00000170266|ENST00000307363|GLB1	GLB1|p.G526Afs*74|1|0.18|ENSG00000170266|chr3:33014213-33014213|C/-|frameshift_variant	GLB1|p.G526Afs*74|1|0.18|ENSG00000170266|chr3:33014213-33014213|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6560974121094	2	483.26875	964.522947	-1.2012	-0.00058048	0.77918	0.00037655	-0.42197	-0.00020393	483.2695269314255	36.892	0.35524	37.663	37.461	37.816	0.7709					8	6	2	0	0	0	0.39388	1	13469	13469		39.957	7.1716	1	713970			3099	7487	2002	2026	3019	3019					0.03926651694666816
ALQHEKEGY	9	Unmodified	_ALQHEKEGY_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000574210.5_1_17:2594901-2597328:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1104125976562	2	537.764363	1073.51417	-0.84464	-0.00045422	1.3208	0.00071026	0.47613	0.00025604	538.2659817224478	73.123	0.50885	73.858	73.684	74.192	0.73541					12	9	2	0	0	0	0.75466	1	27849	27849		7.9102	0.62092	1	575370			3100	4399	2003	2027	3020	3020					-0.01964321941795788
ALQITDEGF	9	Unmodified	_ALQITDEGF_					0	0	0		tr|U7SJP8|U7SJP8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02046PE=4SV=1	tr|U7SJP8|U7SJP8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02046PE=4SV=1	tr|U7SJP8|U7SJP8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02046PE=4SV=1	MSMS	A375_MHC_IP_R2	2	497.1551818847656	2	497.248015	992.481476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.067	1	82.81	82.31	83.31	0.74293								0	0	0	0.14812	1	31173	31173		24.674	0.65332	1				3101	29462	2004	2028	3021	3021					-0.015065290646589347
ALQKRLDEV	9	Unmodified	_ALQKRLDEV_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MSMS	A375_MHC_IP_R1	1	358.2766418457031	3	357.876746	1070.60841	-0.26577	-9.5113E-05	-0.21753	-7.7847E-05	-0.4833	-0.00017296	357.8766435625061	26.296	0.7615	26.296	25.966	26.728	0					30	14	3	0	0	0	0.3489	1	7804	7804		27.223	1.2258	1	21875000			3102	3998	2005	2029	3022	3022					0.07592816880332975
ALQKRLDEV	9	Unmodified	_ALQKRLDEV_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MSMS	A375_MHC_IP_R1	1	536.7108764648438	2	536.31148	1070.60841	-1.0343	-0.00055473	0.10515	5.6393E-05	-0.92919	-0.00049833	536.3115224352692	26.296	0.55815	26.296	26.068	26.626	0					26	10	3	0	0	0	0.024772	1	7811	7811		96.367	33.794	1	12018000			3103	3998	2005	2029	3023	3023					0.07592816880332975
ALQKRLDEV	9	Unmodified	_ALQKRLDEV_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	536.7109375	2	536.31148	1070.60841	-1.3162	-0.00070588	-0.13761	-7.3801E-05	-1.4538	-0.00077968	536.3115659895019	25.554	0.71224	26.212	25.939	26.651	0.65827					32	13	4	0	0	0	0.046478	1	8549	8549		82.529	36.508	1	8554600			3104	3998	2005	2029	3024	3024					0.07592816880332975
ALQLKDLGHIH	11	Unmodified	_ALQLKDLGHIH_					0	0	0			REV__ENSG00000187730|ENST00000378585|GABRD	REV__ENSG00000187730|ENST00000378585|GABRD	MULTI-SECPEP	A375_MHC_IP_R2	2	622.2005615234375	2	622.859129	1243.70371	-0.87065	-0.00054229	0.4993	0.000311	-0.37135	-0.0002313	622.859530292276	55.417	1.4776	56.167	55.37	56.848	0.75075					36	28	2	0	0	0	0.84606	1	20864	20864		27.629	13.723	1	1365600	+		3105	22041	2006	2030	3025	3025					0.09160170071368157
ALQLLCWRLI	10	Unmodified	_ALQLLCWRLI_					0	0	0			REV__nc|ENSG00000184999|Q63ZE4-2|SLC22A10	REV__nc|ENSG00000184999|Q63ZE4-2|SLC22A10	MULTI-SECPEP	A375_MHC_IP_R1	1	615.2648315429688	2	614.865369	1227.71618	-0.67761	-0.00041664	-0.51887	-0.00031904	-1.1965	-0.00073568	614.8650758162183	139.36	0.60794	139.36	139.06	139.67	0					25	11	3	0	0	0	0.74754	1	53546	53546		29.082	0	1	3277300	+		3106	21854	2007	2031	3026	3026					0.11143490210042728
ALQLQIKPV	9	Unmodified	_ALQLQIKPV_					0	0	0			REV__ENSG00000145041|ENST00000684031|DCAF1	REV__ENSG00000145041|ENST00000684031|DCAF1	MULTI-SECPEP	A375_MHC_IP_R2	2	505.6697998046875	2	505.32386	1008.63317	-0.74584	-0.00037689	-0.086295	-4.3607E-05	-0.83213	-0.0004205	505.82528109886704	75.16	0.50648	75.897	75.671	76.178	0.73752					14	9	2	0	0	0	0.79683	1	28450	28450		2.3027	0	1	1550600	+		3107	19459	2008	2032	3027	3027					0.12919496753693238
ALQLYFWRLVF	11	Unmodified	_ALQLYFWRLVF_					0	0	0			REV__SLC22A25|p.S179F|1|0.15|ENSG00000196600|chr11:63217706-63217706|G/A|missense_variant	REV__SLC22A25|p.S179F|1|0.15|ENSG00000196600|chr11:63217706-63217706|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	485.2107238769531	3	485.943091	1454.80744	-0.50635	-0.00024606	0.50113	0.00024352	-0.0052182	-2.5358E-06	485.943194828307	133.35	1.0199	133.35	133	134.02	0					41	19	3	0	0	0	1.0005	1	51377	51377		0.36667	0.36667	1	2117700	+		3108	27979	2009	2033	3028	3028					0.09823077179021311
ALQLYFWRLVF	11	Unmodified	_ALQLYFWRLVF_					0	0	0			REV__SLC22A25|p.S179F|1|0.15|ENSG00000196600|chr11:63217706-63217706|G/A|missense_variant	REV__SLC22A25|p.S179F|1|0.15|ENSG00000196600|chr11:63217706-63217706|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	485.2102966308594	3	485.943091	1454.80744	-0.5272	-0.00025619	0.39037	0.0001897	-0.13683	-6.649E-05	485.94325566095796	133.49	0.9639	133.66	133.15	134.11	0.16487					41	18	3	0	0	0	1.0005	1	52336	52336		2.4348	2.4348	1	2837900	+		3109	27979	2009	2033	3029	3029					0.09823077179021311
ALQNYIKEA	9	Unmodified	_ALQNYIKEA_					0	0	0		nc|ENSG00000087510|Q92754-2|TFAP2C;ENSG00000087510|ENST00000201031|TFAP2C	nc|ENSG00000087510|Q92754-2|TFAP2C	nc|ENSG00000087510|Q92754-2|TFAP2C	MULTI-SECPEP	A375_MHC_IP_R1	1	525.6848754882812	2	525.284931	1048.55531	-0.63918	-0.00033575	-1.5267	-0.00080193	-2.1658	-0.0011377	525.285305797226	46.853	0.76912	46.853	46.545	47.315	0					32	14	3	0	0	0	0.030244	1	16473	16473		96.936	30.479	1	4840300			3110	1878	2010	2034	3030	3030					0.03297439097673305
ALQNYIKEA	9	Unmodified	_ALQNYIKEA_					0	0	0		nc|ENSG00000087510|Q92754-2|TFAP2C;ENSG00000087510|ENST00000201031|TFAP2C	nc|ENSG00000087510|Q92754-2|TFAP2C	nc|ENSG00000087510|Q92754-2|TFAP2C	MULTI-SECPEP	A375_MHC_IP_R2	2	525.6849365234375	2	525.284931	1048.55531	-0.42603	-0.00022379	0.010479	5.5044E-06	-0.41555	-0.00021828	525.2848710312401	46.033	0.55578	46.798	46.603	47.159	0.76519					17	10	2	0	0	0	0.11887	1	17226	17226		55.235	24.598	1	4598200			3111	1878	2010	2034	3031	3031					0.03297439097673305
ALQNYLTEA	9	Unmodified	_ALQNYLTEA_					0	0	0		ENSG00000008196|ENST00000393655|TFAP2B;nc|ENSG00000008196|Q92481-2|TFAP2B;nc|ENSG00000137203|P05549-5|TFAP2A;nc|ENSG00000137203|P05549-6|TFAP2A;nc|ENSG00000137203|P05549|TFAP2A;ENSG00000137203|ENST00000379613|TFAP2A	ENSG00000008196|ENST00000393655|TFAP2B	ENSG00000008196|ENST00000393655|TFAP2B	MULTI-MSMS	A375_MHC_IP_R1	1	512.1608276367188	2	511.761289	1021.50803	-0.48975	-0.00025063	0.82763	0.00042355	0.33788	0.00017292	511.7610936086397	77.463	0.8636	77.463	76.878	77.742	0					41	16	3	0	0	0	0.034481	1	28150	28150		71.134	3.0529	1	3317700			3112	954	2011	2035	3032	3032					-0.001868401733418068
ALQNYLTEA	9	Unmodified	_ALQNYLTEA_					0	0	0		ENSG00000008196|ENST00000393655|TFAP2B;nc|ENSG00000008196|Q92481-2|TFAP2B;nc|ENSG00000137203|P05549-5|TFAP2A;nc|ENSG00000137203|P05549-6|TFAP2A;nc|ENSG00000137203|P05549|TFAP2A;ENSG00000137203|ENST00000379613|TFAP2A	ENSG00000008196|ENST00000393655|TFAP2B	ENSG00000008196|ENST00000393655|TFAP2B	MULTI-MSMS	A375_MHC_IP_R2	2	512.22119140625	2	511.761289	1021.50803	-0.74627	-0.00038191	0.8971	0.0004591	0.15084	7.7192E-05	511.76116136071744	76.494	1.0134	77.234	76.742	77.755	0.74052					43	19	3	0	0	0	0.034481	1	29062	29062		71.134	3.0529	1	4325200			3113	954	2011	2035	3033	3033					-0.001868401733418068
ALQPLLHTV	9	Unmodified	_ALQPLLHTV_					0	0	0		ENST00000469841.5_1_3:57131519-57204269:-|nuORF;nc|ENSG00000144730|Q8NFM7-4|IL17RD;nc|ENSG00000144730|Q8NFM7-3|IL17RD;ENSG00000144730|ENST00000296318|IL17RD;nc|ENSG00000144730|Q8NFM7-2|IL17RD	ENST00000469841.5_1_3:57131519-57204269:-|nuORF	ENST00000469841.5_1_3:57131519-57204269:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	496.1579284667969	2	496.300384	990.586216	-0.37286	-0.00018505	-0.26578	-0.00013191	-0.63865	-0.00031696	496.30010765914585	68.042	0.50848	68.777	68.51	69.018	0.73511					14	9	2	0	0	0	0.52144	1	25839	25839		16.942	0	1	1223900			3114	5510	2012	2036	3034	3034					0.09054637202564209
ALQPLPAT	8	Unmodified	_ALQPLPAT_					0	0	0		ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-3|RPAP1;nc|ENSG00000103932|Q9BWH6-2|RPAP1	ENSG00000103932|ENST00000304330|RPAP1	ENSG00000103932|ENST00000304330|RPAP1	MULTI-MSMS	A375_MHC_IP_R1	1	406.2612609863281	2	405.739628	809.464704	-0.35212	-0.00014287	0.61846	0.00025093	0.26635	0.00010807	405.73974198031095	75.574	0.80511	75.574	75.11	75.915	0					34	15	4	0	0	0	0.77123	1	27380	27380		14.582	0	1	6790900			3115	2474	2013	2037	3035	3035					0.05235014840047825
ALQQRPSV	8	Unmodified	_ALQQRPSV_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-2|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-SECPEP	A375_MHC_IP_R1	1	450.1712646484375	2	449.758884	897.503215	-0.50814	-0.00022854	0.22686	0.00010203	-0.28128	-0.00012651	449.7589280153789	29.175	0.70879	29.175	28.694	29.403	0					25	13	3	0	0	0	0.86765	1	9199	9199		32.117	11.663	1	6393300			3116	9048	2014	2038	3036	3036					0.05036320474573586
ALQREAWDP	9	Unmodified	_ALQREAWDP_					0	0	0			REV__nc|ENSG00000179583|P33076-2|CIITA	REV__nc|ENSG00000179583|P33076-2|CIITA	MULTI-SECPEP	A375_MHC_IP_R1	1	542.645263671875	2	543.272355	1084.53016	-0.11046	-6.0009E-05	-1.5443	-0.00083896	-1.6547	-0.00089897	543.271184293762	48.838	1.468	48.838	48.325	49.793	0					41	28	3	0	0	0	0.71541	1	17200	17200		11.64	0.81637	1	5101000	+		3117	21570	2015	2039	3037	3037					-0.008726157049068206
ALQRPILW	8	Unmodified	_ALQRPILW_					0	0	0			REV__ENST00000367145.3_1_1:205633820-205633997:-|nuORF	REV__ENST00000367145.3_1_1:205633820-205633997:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	499.2034606933594	2	498.803094	995.591636	-0.39501	-0.00019703	0.93657	0.00046716	0.54156	0.00027013	498.80382687351806	64.097	0.55629	64.097	63.837	64.393	0					24	10	3	0	0	0	0.972	1	23236	23236		2.8892	0.31174	1	1729300	+		3118	23958	2016	2040	3038	3038					0.09366360785031702
ALQRPILW	8	Unmodified	_ALQRPILW_					0	0	0			REV__ENST00000367145.3_1_1:205633820-205633997:-|nuORF	REV__ENST00000367145.3_1_1:205633820-205633997:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	498.803094	995.591636	-0.49273	-0.00024577	1.7918	0.00089374	1.299	0.00064797	498.8037843483329	63.035	0.35437	63.777	63.584	63.938	0.74263	-0.1596	0.00017732	NaN	2.8892	16	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3555900	+		3119	23958	2016	2040							0.09366360785031702
ALQRVLVSL	9	Unmodified	_ALQRVLVSL_					0	0	0		ENSG00000100154|ENST00000397906|TTC28	ENSG00000100154|ENST00000397906|TTC28	ENSG00000100154|ENST00000397906|TTC28	MULTI-SECPEP	A375_MHC_IP_R1	1	500.47491455078125	2	499.821484	997.628415	-0.47527	-0.00023755	0.0071296	3.5635E-06	-0.46814	-0.00023399	499.82142931322136	89.972	0.55579	89.972	89.628	90.184	0					15	10	2	0	0	0	0.50702	1	33018	33018		25.399	2.663	1	1252600			3120	2128	2017	2041	3039	3039					0.1295061261095043
ALQSLDELSL	10	Unmodified	_ALQSLDELSL_					0	0	0			REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	MULTI-SECPEP	A375_MHC_IP_R2	2	545.19482421875	2	544.795329	1087.5761	-0.84545	-0.0004606	-1.2704	-0.00069212	-2.1159	-0.0011527	544.7950985337337	64.849	0.86377	65.587	65.359	66.222	0.73811					27	16	2	0	0	0	0.78945	1	24616	24616		25.399	7.2643	1	1849300	+		3121	17938	2018	2042	3040	3040					0.03581984686684336
ALQTQWSWMLQ	11	Unmodified	_ALQTQWSWMLQ_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R1	1	465.1944885253906	3	464.564062	1390.67036	-0.18075	-8.397E-05	-0.6616	-0.00030736	-0.84235	-0.00039133	464.56364393957523	36.036	0.61126	36.036	35.727	36.339	0					18	11	2	0	0	0	0.99819	1	11919	11919		5.8681	5.5389	1	2200000			3122	14788	2019	2043	3041	3041					-0.009351997628527897
ALQVDALAA	9	Unmodified	_ALQVDALAA_					0	0	0			REV__ENST00000518881.5_1_8:23425823-23429007:+|nuORF	REV__ENST00000518881.5_1_8:23425823-23429007:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	436.64764404296875	2	436.247818	870.481082	-0.35724	-0.00015585	-0.043812	-1.9113E-05	-0.40105	-0.00017496	436.2477407270138	84.967	0.51254	84.967	84.697	85.21	0					16	9	2	0	0	0	0.17328	1	31133	31133		39.957	3.9131	1	1543600	+		3123	25678	2020	2044	3042	3042					0.04066096006135922
ALQVDALAA	9	Unmodified	_ALQVDALAA_					0	0	0			REV__ENST00000518881.5_1_8:23425823-23429007:+|nuORF	REV__ENST00000518881.5_1_8:23425823-23429007:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	436.6479187011719	2	436.247818	870.481082	-0.20077	-8.7586E-05	-0.20201	-8.8127E-05	-0.40278	-0.00017571	436.24766302132844	84.189	0.56345	84.929	84.611	85.175	0.73962					17	10	2	0	0	0	0.17328	1	32032	32032		39.957	0.0076237	1	2352300	+		3124	25678	2020	2044	3043	3043					0.04066096006135922
ALQVDALAA	9	Unmodified	_ALQVDALAA_					0	0	0			REV__ENST00000518881.5_1_8:23425823-23429007:+|nuORF	REV__ENST00000518881.5_1_8:23425823-23429007:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	436.247818	870.481082	-0.35724	-0.00015585	-0.043812	-1.9113E-05	-0.40105	-0.00017496	436.2477407270138	84.967	0.51254	84.967	84.697	85.21	0	0.018964	4.1826E-05	NaN	39.957	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1543600	+		3125	25678	2020	2044							0.04066096006135922
ALQVDALAA	9	Unmodified	_ALQVDALAA_					0	0	0			REV__ENST00000518881.5_1_8:23425823-23429007:+|nuORF	REV__ENST00000518881.5_1_8:23425823-23429007:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	436.247818	870.481082	-0.20077	-8.7586E-05	-0.20201	-8.8127E-05	-0.40278	-0.00017571	436.24766302132844	84.189	0.56345	84.929	84.611	85.175	0.73962	-0.018964	-9.6203E-05	NaN	39.957	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2352300	+		3126	25678	2020	2044							0.04066096006135922
ALRARAALY	9	Unmodified	_ALRARAALY_					0	0	0			REV__ENSG00000033100|ENST00000035307|CHPF2	REV__ENSG00000033100|ENST00000035307|CHPF2	MULTI-SECPEP	A375_MHC_IP_R1	1	503.2033996582031	2	502.803626	1003.5927	-0.39808	-0.00020016	-0.39041	-0.0001963	-0.78849	-0.00039645	502.80371824526003	59.241	0.45835	59.241	58.938	59.397	0					14	8	3	0	0	0	0.77244	1	21333	21333		9.3474	4.1168	1	1188100	+		3127	16305	2021	2045	3044	3044					0.09104575153924088
ALRARFECWTV	11	Unmodified	_ALRARFECWTV_					0	0	0			REV__nc|ENSG00000128159|Q96RT7-2|TUBGCP6	REV__nc|ENSG00000128159|Q96RT7-2|TUBGCP6	MULTI-SECPEP	A375_MHC_IP_R2	2	450.6814880371094	3	451.236168	1350.68668	-0.43386	-0.00019577	1.0831	0.00048871	0.6492	0.00029294	451.57072010235606	33.127	0.45837	33.88	33.534	33.992	0.75225					12	8	2	0	0	0	0.99109	1	11851	11851		1.3296	0	1	1509300	+		3128	18443	2022	2046	3045	3045					0.025359261939001954
ALREALVP	8	Unmodified	_ALREALVP_					0	0	0		ENST00000308064.6_1_11:45687014-45687152:-|nuORF	ENST00000308064.6_1_11:45687014-45687152:-|nuORF	ENST00000308064.6_1_11:45687014-45687152:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	434.958740234375	2	434.766178	867.517802	-0.56074	-0.00024379	-0.018817	-8.1812E-06	-0.57956	-0.00025197	434.7661329819273	61.802	1.1636	62.545	62.17	63.333	0.74263					54	22	4	0	0	0	0.97021	1	23631	23631		10.824	1.4408	1	41561000			3129	10595	2023	2047	3046	3046					0.07874392622704818
ALRFRNIN	8	Unmodified	_ALRFRNIN_					0	0	0		ENST00000324138.7_2_X:14883662-14891178:-|nuORF	ENST00000324138.7_2_X:14883662-14891178:-|nuORF	ENST00000324138.7_2_X:14883662-14891178:-|nuORF	MSMS	A375_MHC_IP_R1	1	502.4380187988281	2	502.293425	1002.5723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.508	1	78.508	78.008	79.008	0								0	0	0	0.16876	1	28650	28650		20.871	6.2895	1				3130	10714	2024	2048	3047	3047					0.07111404494139606
ALRFSRTL	8	Unmodified	_ALRFSRTL_					0	0	0			REV__ENSG00000234828|ENST00000636793|IQCM	REV__ENSG00000234828|ENST00000636793|IQCM	MULTI-SECPEP	A375_MHC_IP_R2	2	482.64239501953125	2	482.290351	962.566149	-0.71477	-0.00034473	2.0476	0.00098753	1.3328	0.00064281	482.2914751755231	97.55	0.35495	98.306	98.077	98.432	0.75587					9	6	2	0	0	0	0.972	1	37067	37067		0.69038	0	1	507540	+		3131	22755	2025	2049	3048	3048					0.08336886262623011
ALRGETIPV	9	Unmodified	_ALRGETIPV_					0	0	0		nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1	nc|ENSG00000163374|Q9H869-8|YY1AP1	nc|ENSG00000163374|Q9H869-8|YY1AP1	MULTI-SECPEP	A375_MHC_IP_R2	2	478.681884765625	2	478.282192	954.549831	-0.53992	-0.00025823	-1.4526	-0.00069477	-1.9926	-0.00095301	478.2819631448769	76.53	0.70911	77.27	76.792	77.501	0.74052					15	13	2	0	0	0	0.74651	1	29096	29096		2.0598	0	1	1407700			3132	14719	2026	2050	3049	3049					0.0707376030584328
ALRGHLEV	8	Unmodified	_ALRGHLEV_					0	0	0		nc|ENSG00000170921|Q9HCD6-4|TANC2;nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;ENST00000581143.1_1_17:61466073-61473304:+|nuORF	nc|ENSG00000170921|Q9HCD6-4|TANC2	nc|ENSG00000170921|Q9HCD6-4|TANC2	MULTI-SECPEP	A375_MHC_IP_R1	1	448.150146484375	2	447.761426	893.5083	0.091784	4.1098E-05	-1.8046	-0.00080804	-1.7128	-0.00076694	447.7604417361871	37.349	0.30693	37.349	37.249	37.556	0					9	5	2	0	0	0	0.972	1	12579	12579		4.3292	0.38484	1	466090			3133	7560	2027	2051	3050	3050					0.05728624337200472
ALRGKGDR	8	Unmodified	_ALRGKGDR_					0	0	0			REV__ENSG00000167721|ENST00000301364|TSR1	REV__ENSG00000167721|ENST00000301364|TSR1	MULTI-SECPEP	A375_MHC_IP_R1	1	437.1568908691406	2	436.756675	871.498798	0.086702	3.7868E-05	0.12019	5.2496E-05	0.2069	9.0363E-05	436.75663251374857	108.89	1.5247	108.89	108.41	109.93	0					44	29	2	0	0	0	0.972	1	39954	39954		5.2307	2.9279	1	2203800	+		3134	20787	2028	2052	3051	3051					0.05790856051658011
ALRKPVINYKQ	11	Unmodified	_ALRKPVINYKQ_					0	0	0			REV__tr|U7SUD7|U7SUD7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01195PE=3SV=1	REV__tr|U7SUD7|U7SUD7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01195PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	665.8024291992188	2	665.403704	1328.79285	-0.91438	-0.00060843	-0.63983	-0.00042574	-1.5542	-0.0010342	665.4031417122342	149.89	1.196	149.89	148.81	150	0					117	46	3	0	0	0	0.73902	1	57120	57120		0.30703	0	1	194640	+		3135	28548	2029	2053	3052	3052					0.14161005030882734
ALRKPVINYKQ	11	Unmodified	_ALRKPVINYKQ_					0	0	0			REV__tr|U7SUD7|U7SUD7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01195PE=3SV=1	REV__tr|U7SUD7|U7SUD7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01195PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	665.403704	1328.79285	-0.63602	-0.00042321	-0.76595	-0.00050967	-1.402	-0.00093288	665.4031179776152	149.9	0.85162	149.92	149.16	150.01	0.01825	0.013295	-7.9746E-05	NaN	0.30703	105	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167020	+		3136	28548	2029	2053							0.14161005030882734
ALRLDQLKL	9	Unmodified	_ALRLDQLKL_					0	0	0		ENSG00000144535|ENST00000325385|DIS3L2;nc|ENSG00000144535|Q8IYB7-2|DIS3L2;ENST00000498319.2_1_2:233127988-233172255:+|nuORF;ENST00000433430.5_1_2:233125383-233196385:+|nuORF;ENST00000445090.5_1_2:233028172-233195406:+|nuORF	ENSG00000144535|ENST00000325385|DIS3L2	ENSG00000144535|ENST00000325385|DIS3L2	MULTI-MSMS	A375_MHC_IP_R2	2	357.62872314453125	3	357.229119	1068.66553	-0.99144	-0.00035417	-0.19852	-7.0919E-05	-1.19	-0.00042509	357.22908355897584	28.86	0.59724	29.559	29.384	29.981	0.69872					15	11	2	0	0	0	0.65748	1	10097	10097		10.8	0.48427	1	8886400			3137	5491	2030	2054	3053	3053					0.13394284156697722
ALRLLGTL	8	Unmodified	_ALRLLGTL_					0	0	0			REV__nc|ENSG00000115464|Q70CQ2-3|USP34	REV__nc|ENSG00000115464|Q70CQ2-3|USP34	MULTI-SECPEP	A375_MHC_IP_R1	1	429.1846618652344	2	428.78437	855.554188	0.014958	6.4137E-06	-0.11776	-5.0494E-05	-0.1028	-4.408E-05	428.7842862999203	82.508	0.71059	82.508	82.163	82.874	0					23	13	3	0	0	0	0.55372	1	30190	30190		48.346	14.243	1	2497300	+		3138	17889	2031	2055	3054	3054					0.12063269519433106
ALRLLGTL	8	Unmodified	_ALRLLGTL_					0	0	0			REV__nc|ENSG00000115464|Q70CQ2-3|USP34	REV__nc|ENSG00000115464|Q70CQ2-3|USP34	MULTI-SECPEP	A375_MHC_IP_R2	2	429.18414306640625	2	428.78437	855.554188	-0.29078	-0.00012468	-0.16561	-7.1013E-05	-0.4564	-0.0001957	428.78433677824916	81.361	0.55409	82.103	81.877	82.431	0.74293					22	10	3	0	0	0	0.55372	1	30904	30904		39.957	11.47	1	2891500	+		3139	17889	2031	2055	3055	3055					0.12063269519433106
ALRLLRAVY	9	Unmodified	_ALRLLRAVY_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-SECPEP	A375_MHC_IP_R2	2	537.4241943359375	2	537.842751	1073.67095	-1.1479	-0.0006174	0.22612	0.00012162	-0.9218	-0.00049578	537.8428490517193	33.317	0.35625	34.069	33.84	34.196	0.75225					11	6	2	0	0	0	0.79683	1	11948	11948		2.3027	0.24298	1	1385300			3140	2444	2032	2056	3056	3056					0.13706007739165216
ALRLSASA	8	Unmodified	_ALRLSASA_					0	0	0		ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	MULTI-SECPEP	A375_MHC_IP_R1	1	395.13482666015625	2	394.734877	787.455202	-0.22951	-9.0596E-05	0.1702	6.7182E-05	-0.059315	-2.3414E-05	394.734881351416	32.712	0.55498	32.712	32.485	33.04	0					22	10	3	0	0	0	0.42778	1	10593	10593		69.105	10.426	1	5203500			3141	4145	2033	2057	3057	3057					0.052972465545167324
ALRLSASA	8	Unmodified	_ALRLSASA_					0	0	0		ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	MULTI-MSMS	A375_MHC_IP_R2	2	395.1348571777344	2	394.734877	787.455202	-0.16059	-6.3389E-05	0.21294	8.4055E-05	0.052354	2.0666E-05	394.7349127162864	32.008	0.45578	32.745	32.504	32.96	0.73691					18	8	3	0	0	0	0.16549	1	11354	11354		78.728	9.6231	1	4277600			3142	4145	2033	2057	3058	3058					0.052972465545167324
ALRLSASALF	10	Unmodified	_ALRLSASALF_					0	0	0		ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	MULTI-SECPEP	A375_MHC_IP_R1	1	525.2111206054688	2	524.811116	1047.60768	-0.42354	-0.00022228	0.147	7.7149E-05	-0.27654	-0.00014513	524.8112641543152	96.606	1.0646	96.606	96.274	97.338	0					43	20	4	0	0	0	0.54012	1	35458	35458		45.74	12.954	1	17584000			3143	4145	2034	2058	3059	3059					0.08578022231267823
ALRLSASALF	10	Unmodified	_ALRLSASALF_					0	0	0		ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	MULTI-SECPEP	A375_MHC_IP_R2	2	525.2106323242188	2	524.811116	1047.60768	-0.37317	-0.00019584	-0.0075431	-3.9587E-06	-0.38071	-0.0001998	524.8111702168972	95.653	0.96627	96.404	96.093	97.059	0.75045					43	18	4	0	0	0	0.41513	1	36284	36284		53.404	17.277	1	17246000			3144	4145	2034	2058	3060	3060					0.08578022231267823
ALRLSSQLV	9	Unmodified	_ALRLSSQLV_					0	0	0		ENST00000534797.5_1_11:503263-503554:-|nuORF	ENST00000534797.5_1_11:503263-503554:-|nuORF	ENST00000534797.5_1_11:503263-503554:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	494.2032470703125	2	493.803291	985.59203	-0.45135	-0.00022288	0.36599	0.00018073	-0.085362	-4.2152E-05	493.8033246819649	68.563	0.55899	68.563	68.31	68.869	0					16	10	2	0	0	0	0.60917	1	24905	24905		5.7319	0	1	1636200			3145	13217	2035	2059	3061	3061					0.09865735714242874
ALRNILGV	8	Unmodified	_ALRNILGV_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	A375_MHC_IP_R1	1	428.673828125	2	428.27417	854.533787	-0.46019	-0.00019709	0.58265	0.00024953	0.12246	5.2446E-05	428.2743847335085	67.424	0.61354	67.424	67.091	67.704	0					27	11	3	0	0	0	0.48378	1	24382	24382		49.669	0	1	6996800			3146	1791	2036	2060	3062	3062					0.10070098859625887
ALRPPLPPL	9	Unmodified	_ALRPPLPPL_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1;ENST00000466794.5_1_19:12769146-12777470:-|nuORF;ENST00000600281.1_1_19:12776145-12777515:-|nuORF	nc|ENSG00000104774|O00754-2|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-MSMS	A375_MHC_IP_R2	2	487.71453857421875	2	487.313295	972.612037	-0.45591	-0.00022217	0.19013	9.2654E-05	-0.26578	-0.00012952	487.31337076588704	86.706	0.91621	87.439	86.998	87.914	0.733					34	17	3	0	0	0	0.17328	1	32980	32980		39.957	11.47	1	2160400			3147	2535	2037	2061	3063	3063					0.12463531444836917
ALRPSKFSL	9	Unmodified	_ALRPSKFSL_					0	0	0			REV__LMAN1L|p.G41S|1|0.38|ENSG00000140506|chr15:74812975-74812975|G/A|missense_variant	REV__LMAN1L|p.G41S|1|0.38|ENSG00000140506|chr15:74812975-74812975|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	509.8871765136719	2	509.805834	1017.59712	-0.6436	-0.00032811	2.539	0.0012944	1.8954	0.00096628	510.3096632554789	86.039	0.50658	86.039	85.768	86.274	0					10	9	2	0	0	0	0.62767	1	31524	31524		23.148	3.7094	1	1030200	+		3148	26933	2038	2062	3064	3064					0.08902039576844345
ALRQELATL	9	Unmodified	_ALRQELATL_					0	0	0		ENSG00000197599|ENST00000389176|CCDC154	ENSG00000197599|ENST00000389176|CCDC154	ENSG00000197599|ENST00000389176|CCDC154	MULTI-SECPEP	A375_MHC_IP_R1	1	507.98016357421875	2	507.800749	1013.58694	-0.43231	-0.00021953	-0.087919	-4.4645E-05	-0.52023	-0.00026417	507.80067333084685	60.95	1.0197	60.95	60.566	61.585	0					34	19	3	0	0	0	0.059859	1	21978	21978		71.922	0	1	20299000			3149	9176	2039	2063	3065	3065					0.0806943185162936
ALRQLRPTL	9	Unmodified	_ALRQLRPTL_					0	0	0			REV__ENST00000529211.1_1_11:8640457-8640535:-|nuORF	REV__ENST00000529211.1_1_11:8640457-8640535:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	356.9485168457031	3	356.560981	1066.66111	-0.47587	-0.00016968	-0.34919	-0.00012451	-0.82506	-0.00029418	356.5609548923921	26.796	0.46053	27.456	27.262	27.722	0.65992					10	8	2	0	0	0	0.74768	1	9079	9079		2.7352	0.23671	1	1387100	+		3150	25815	2040	2064	3066	3066					0.1304481973379552
ALRRALLSL	9	Unmodified	_ALRRALLSL_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	A375_MHC_IP_R1	1	506.22137451171875	2	506.834926	1011.6553	-0.019994	-1.0134E-05	0.15082	7.6439E-05	0.13082	6.6306E-05	506.83491965992266	49.501	0.25415	49.501	49.387	49.642	0					7	4	2	0	0	0	0.74651	1	17478	17478		8.5933	3.8373	1	1093400			3151	7927	2041	2065	3067	3067					0.14993721222128897
ALRRRARERHQ	11	Unmodified	_ALRRRARERHQ_					0	0	0		ENST00000415259.5_2_3:51705798-51705969:+|nuORF	ENST00000415259.5_2_3:51705798-51705969:+|nuORF	ENST00000415259.5_2_3:51705798-51705969:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	725.321044921875	2	724.924523	1447.83449	-0.33002	-0.00023924	-2.9709	-0.0021537	-3.3009	-0.0023929	724.9207507754171	107.26	0.1525	107.26	107.19	107.34	0					4	2	2	0	0	0	0.7362	1	39383	39383		2.9952	1.5133	1	1814300			3152	11676	2042	2066	3068	3068					0.12848998562776615
ALRSDSDQSL	10	Unmodified	_ALRSDSDQSL_					0	0	0		ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6690063476562	2	546.27001	1090.52547	-0.43327	-0.00023668	-0.69179	-0.0003779	-1.1251	-0.00061459	546.269005763678	56.134	0.45553	56.134	55.891	56.347	0					12	8	2	0	0	0	0.88918	1	20134	20134		13.042	0	1	1706500			3153	979	2043	2067	3069	3069					-0.01617544638338586
ALRSEAGDSVP	11	Unmodified	_ALRSEAGDSVP_					0	0	0		ENST00000434316.6_1_13:114145319-114149817:+|nuORF	ENST00000434316.6_1_13:114145319-114149817:+|nuORF	ENST00000434316.6_1_13:114145319-114149817:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	551.2081909179688	2	551.280377	1100.5462	-0.79375	-0.00043758	1.4505	0.00079964	0.65677	0.00036206	551.2812987844947	72.986	0.25431	73.722	73.581	73.836	0.73541					5	3	2	0	0	0	0.86796	1	27701	27701		26.268	4.5215	1	639720			3154	11898	2044	2068	3070	3070					-4.9542586793904775E-05
ALRSLRNSF	9	Unmodified	_ALRSLRNSF_					0	0	0		ENST00000526500.5_1_11:111859671-111889757:+|nuORF;nc|ENSG00000150764|Q155Q3-2|DIXDC1;ENSG00000150764|ENST00000440460|DIXDC1;ENST00000530645.1_1_11:111866135-111866902:+|nuORF	ENST00000526500.5_1_11:111859671-111889757:+|nuORF	ENST00000526500.5_1_11:111859671-111889757:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	532.7035522460938	2	532.30399	1062.59343	-0.95657	-0.00050919	-0.12169	-6.4776E-05	-1.0783	-0.00057396	532.3038763423177	34.398	0.25557	35.151	35.006	35.262	0.75225					7	4	2	0	0	0	0.75466	1	12436	12436		4.3292	0	1	2089000			3155	5862	2045	2069	3071	3071					0.06463369802986563
ALRVTDGALV	10	Unmodified	_ALRVTDGALV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.R415Efs*11|1|0.09|ENSG00000167658|chr19:3980617-3980617|G/-|frameshift_variant;EEF2|p.V416Lfs*18|1|0.09|ENSG00000167658|chr19:3980618-3980619|-/AGCAATCCGCCTGCCTCAGCCTC|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	A375_MHC_IP_R2	2	508.337158203125	2	507.800749	1013.58694	-0.62919	-0.0003195	-0.020668	-1.0495E-05	-0.64986	-0.00033	507.80073939747814	68.355	1.116	69.09	68.409	69.525	0.73511					45	21	3	0	0	0	0.52785	1	25797	25797		26.268	0.86883	1	11359000			3156	7207	2046	2070	3072	3072					0.08069431851617992
ALRWYNHI	8	Unmodified	_ALRWYNHI_					0	0	0		ENST00000479587.1_1_2:207024402-207025435:+|nuORF;ENST00000460760.1_1_2:207024637-207025435:+|nuORF;ENSG00000114942|ENST00000392222|EEF1B2	ENST00000479587.1_1_2:207024402-207025435:+|nuORF	ENST00000479587.1_1_2:207024402-207025435:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1868286132812	2	536.787976	1071.5614	-0.68634	-0.00036842	-1.3665	-0.00073352	-2.0528	-0.0011019	536.7871059856737	139.17	0.19968	139.23	139.1	139.3	0.059906					6	3	2	0	0	0	0.94479	1	54546	54546		19.439	0.18201	1	2264800			3157	3259	2047	2071	3073	3073					0.028480021198447503
ALRYDQPF	8	Unmodified	_ALRYDQPF_					0	0	0			REV__ENSG00000010292|ENST00000315579|NCAPD2	REV__ENSG00000010292|ENST00000315579|NCAPD2	MULTI-MSMS	A375_MHC_IP_R2	2	506.6657409667969	2	505.258717	1008.50288	-0.78371	-0.00039597	0.15637	7.9007E-05	-0.62734	-0.00031697	505.2587202365727	65.2	1.0163	65.938	65.308	66.324	0.73811					46	19	4	0	0	0	0.77515	1	24625	24625		12.532	3.1841	1	18032000	+		3158	16192	2048	2072	3074	3074					-0.0010309924529110503
ALRYRLIY	8	Unmodified	_ALRYRLIY_					0	0	0			REV__nc|ENSG00000146555|Q7Z5N4-3|SDK1	REV__nc|ENSG00000146555|Q7Z5N4-3|SDK1	MULTI-SECPEP	A375_MHC_IP_R1	1	534.174560546875	2	534.321651	1066.62875	-0.32886	-0.00017571	-0.094874	-5.0693E-05	-0.42373	-0.00022641	534.3216504956687	48.308	0.40513	48.308	48.071	48.476	0					16	7	3	0	0	0	0.972	1	17103	17103		2.8892	2.8892	1	2015800	+		3159	19542	2049	2073	3075	3075					0.09810032330801732
ALSAGASLVI	10	Unmodified	_ALSAGASLVI_					0	0	0		ENST00000528273.5_1_17:43509052-43510583:-|nuORF	ENST00000528273.5_1_17:43509052-43510583:-|nuORF	ENST00000528273.5_1_17:43509052-43510583:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	451.67144775390625	2	451.271293	900.528032	-0.1455	-6.5658E-05	0.79317	0.00035793	0.64767	0.00029228	451.2716924347153	60.031	0.56023	60.031	59.548	60.109	0					15	10	2	0	0	0	0.30274	1	21594	21594		39.957	3.8303	1	1764900			3160	13115	2050	2074	3076	3076					0.07378955557271638
ALSAGASLVI	10	Unmodified	_ALSAGASLVI_					0	0	0		ENST00000528273.5_1_17:43509052-43510583:-|nuORF	ENST00000528273.5_1_17:43509052-43510583:-|nuORF	ENST00000528273.5_1_17:43509052-43510583:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	451.271293	900.528032	-0.1455	-6.5658E-05	0.79317	0.00035793	0.64767	0.00029228	451.2716924347153	60.031	0.56023	60.031	59.548	60.109	0	0.10299	0.0002391	NaN	39.957	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1764900			3161	13115	2050	2074							0.07378955557271638
ALSALTARL	9	Unmodified	_ALSALTARL_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-MSMS	A375_MHC_IP_R1	1	458.6850280761719	2	458.284734	914.554916	-0.18227	-8.3532E-05	0.47534	0.00021784	0.29307	0.00013431	458.28484525195876	68.747	0.45467	68.747	68.565	69.02	0					21	8	3	0	0	0	0.11715	1	24951	24951		47.594	3.822	1	3020200			3162	3557	2051	2075	3077	3077					0.09422064168461475
ALSALTARL	9	Unmodified	_ALSALTARL_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-MSMS	A375_MHC_IP_R2	2	458.6845703125	2	458.284734	914.554916	-0.27113	-0.00012426	0.060704	2.7819E-05	-0.21043	-9.6436E-05	458.28468925643483	67.8	0.56092	68.535	68.255	68.816	0.73511					17	10	2	0	0	0	0.037683	1	25681	25681		69.105	10.426	1	2777900			3163	3557	2051	2075	3078	3078					0.09422064168461475
ALSCDEEE	8	Unmodified	_ALSCDEEE_					0	0	0			REV__nc|ENSG00000130396|P55196-1|AFDN	REV__nc|ENSG00000130396|P55196-1|AFDN	MSMS	A375_MHC_IP_R1	1	448.173828125	2	448.171115	894.327678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.118	1	75.118	74.618	75.618	0								0	0	0	0.16876	1	27365	27365		10.183	7.2942	1		+		3164	18537	2052	2076	3079	3079					-0.12371306892487155
ALSDGVHKI	9	Unmodified	_ALSDGVHKI_					0	0	0		ENST00000491175.1_1_3:138340270-138348004:+|nuORF;ENST00000470889.5_1_3:138329799-138348004:+|nuORF;nc|ENSG00000158234|Q9NVQ4|FAIM;ENSG00000158234|ENST00000360570|FAIM;nc|ENSG00000158234|Q9NVQ4-2|FAIM	ENST00000491175.1_1_3:138340270-138348004:+|nuORF	ENST00000491175.1_1_3:138340270-138348004:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	470.1391296386719	2	470.266542	938.51853	-0.69189	-0.00032537	0.16494	7.7567E-05	-0.52695	-0.00024781	470.2665554442598	26.196	0.60879	26.196	26.017	26.626	0					34	11	4	0	0	0	0.073067	2	7839	7836;7839		55.503	15.553	1	33579000			3165	6295	2053	2077	3080;3081	3081					0.0468118727176261
ALSDGVHKI	9	Unmodified	_ALSDGVHKI_					0	0	0		ENST00000491175.1_1_3:138340270-138348004:+|nuORF;ENST00000470889.5_1_3:138329799-138348004:+|nuORF;nc|ENSG00000158234|Q9NVQ4|FAIM;ENSG00000158234|ENST00000360570|FAIM;nc|ENSG00000158234|Q9NVQ4-2|FAIM	ENST00000491175.1_1_3:138340270-138348004:+|nuORF	ENST00000491175.1_1_3:138340270-138348004:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	470.7998352050781	2	470.266542	938.51853	-1.0493	-0.00049344	0.23014	0.00010823	-0.81915	-0.00038522	470.2666235309504	25.512	0.66033	26.157	25.977	26.638	0.64488					29	12	3	0	0	0	0.073067	1	8570	8570		55.503	21.101	1	19851000			3166	6295	2053	2077	3082	3082					0.0468118727176261
ALSDHHIYL	9	Unmodified	_ALSDHHIYL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	A375_MHC_IP_R1	1	357.2537841796875	3	356.853941	1067.53999	0.14869	5.306E-05	0.072262	2.5787E-05	0.22095	7.8847E-05	356.853915957421	47.693	0.75631	47.693	47.416	48.173	0					42	14	4	0	0	0	0.015336	1	16753	16753		69.105	47.568	1	66742000			3167	5833	2054	2078	3083	3083					0.008925723004722386
ALSDHHIYL	9	Unmodified	_ALSDHHIYL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-SECPEP	A375_MHC_IP_R1	1	535.1766357421875	2	534.777274	1067.53999	-0.56667	-0.00030304	0.19826	0.00010602	-0.36842	-0.00019702	534.7773255971614	47.693	0.70563	47.693	47.416	48.122	0					39	13	4	0	0	0	0.016207	1	16750	16750		109.63	73.502	1	80705000			3168	5833	2054	2078	3084	3084					0.008925723004722386
ALSDHHIYL	9	Unmodified	_ALSDHHIYL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	A375_MHC_IP_R2	2	357.2537536621094	3	356.853941	1067.53999	-0.035603	-1.2705E-05	-0.076084	-2.7151E-05	-0.11169	-3.9856E-05	356.8538820311872	46.777	0.61073	47.538	47.206	47.817	0.76128					38	11	4	0	0	0	0.026461	1	17475	17475		60.074	38.537	1	61015000			3169	5833	2054	2078	3085	3085					0.008925723004722386
ALSDHHIYL	9	Unmodified	_ALSDHHIYL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-SECPEP	A375_MHC_IP_R2	2	535.177001953125	2	534.777274	1067.53999	-0.62733	-0.00033548	-0.27713	-0.0001482	-0.90446	-0.00048369	534.7770137735424	46.776	0.66109	47.537	47.206	47.867	0.76128					36	12	4	0	0	0	0.010819	1	17477	17477		131.3	86.891	1	58186000			3170	5833	2054	2078	3086	3086					0.008925723004722386
ALSDLLTLL	9	Unmodified	_ALSDLLTLL_					0	0	0		ENSG00000101188|ENST00000370501|NTSR1	ENSG00000101188|ENST00000370501|NTSR1	ENSG00000101188|ENST00000370501|NTSR1	MULTI-MSMS	A375_MHC_IP_R1	1	958.7075805664062	1	958.581925	957.574648	-0.24564	-0.00023547	0.55254	0.00052965	0.30689	0.00029418	958.582291389715	137.62	0.15245	137.62	137.54	137.69	0					4	2	2	0	0	0	0.03063	1	52964	52964		74.423	3.2892	1	1590000			3171	2265	2055	2079	3087	3087					0.09416395388586807
ALSDLRCNL	9	Unmodified	_ALSDLRCNL_					0	0	0		nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6;ENST00000469182.1_1_6:31610750-31613330:-|nuORF	nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-4|BAG6	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1626281738281	2	502.763309	1003.51206	-0.53363	-0.00026829	0.25164	0.00012652	-0.28199	-0.00014178	502.76356939265287	69.082	0.70929	69.817	69.474	70.184	0.73511					16	13	2	0	0	0	0.63327	1	26211	26211		13.042	0	1	1090700			3172	9446	2056	2080	3088	3088					0.010449260487234824
ALSDRALAV	9	Unmodified	_ALSDRALAV_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-SECPEP	A375_MHC_IP_R1	1	458.6664123535156	2	458.266542	914.51853	-0.2583	-0.00011837	-0.21805	-9.9925E-05	-0.47635	-0.0002183	458.2664363749288	36.158	0.50647	36.158	35.932	36.439	0					22	9	3	0	0	0	0.27742	1	12061	12061		51.63	5.9302	1	5901300	+		3173	19022	2057	2081	3089	3089					0.05785187271760606
ALSDRALAV	9	Unmodified	_ALSDRALAV_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-SECPEP	A375_MHC_IP_R2	2	458.6662292480469	2	458.266542	914.51853	-0.57509	-0.00026354	0.16606	7.6099E-05	-0.40903	-0.00018745	458.26654043305103	35.299	0.55659	36.062	35.878	36.435	0.76338					21	10	3	0	0	0	0.37663	1	12792	12792		43.772	14.691	1	5828400	+		3174	19022	2057	2081	3090	3090					0.05785187271760606
ALSDSIHTV	9	Unmodified	_ALSDSIHTV_					0	0	0		ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	MULTI-MSMS	A375_MHC_IP_R1	1	472.1478271484375	2	471.748182	941.481811	-0.20613	-9.7242E-05	-0.35607	-0.00016798	-0.5622	-0.00026522	471.7479443153932	42.764	1.0648	42.764	42.386	43.451	0					44	20	4	0	0	0	0.0016247	2	14815	14815;14855		147.83	80.487	1	63204000			3175	2952	2058	2082	3091;3092	3091					0.008728906551937143
ALSDSIHTV	9	Unmodified	_ALSDSIHTV_					0	0	0		ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	MULTI-MSMS	A375_MHC_IP_R2	2	472.2206115722656	2	471.748182	941.481811	-0.53183	-0.00025089	-0.16798	-7.9246E-05	-0.69982	-0.00033014	471.7480472047902	41.963	0.91865	42.738	42.453	43.372	0.77451					45	17	4	0	0	0	0.0016247	3	15616	15574;15595;15616		147.83	80.487	1	59105000			3176	2952	2058	2082	3093;3094;3095	3095					0.008728906551937143
ALSEELVQL	9	Unmodified	_ALSEELVQL_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	A375_MHC_IP_R1	1	501.67919921875	2	501.279315	1000.54408	-0.24958	-0.00012511	0.34011	0.00017049	0.090527	4.5379E-05	501.27935789401124	105.69	1.8359	105.69	105.25	107.08	0					79	35	5	0	0	0	0.012712	1	38731	38731		92.822	25.478	1	27310000			3177	7534	2059	2083	3096	3096					0.04382617003534506
ALSEELVQL	9	Unmodified	_ALSEELVQL_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	A375_MHC_IP_R2	2	501.67919921875	2	501.279315	1000.54408	-0.539	-0.00027019	-0.05015	-2.5139E-05	-0.58915	-0.00029533	501.2792307033006	104.86	2.2387	105.62	104.7	106.94	0.76308					79	43	3	0	0	0	0.0090669	1	39586	39586		100.37	29.238	1	32607000			3178	7534	2059	2083	3097	3097					0.04382617003534506
ALSEKIVSV	9	Unmodified	_ALSEKIVSV_					0	0	0		ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	MULTI-MSMS	A375_MHC_IP_R1	1	473.68402099609375	2	473.2844	944.554247	-0.56681	-0.00026826	0.21133	0.00010002	-0.35548	-0.00016824	473.2844304093848	53.179	0.55695	53.179	52.897	53.453	0					24	10	3	0	0	0	0.0061124	1	18951	18951		133.05	29.304	1	7559900			3179	3973	2060	2084	3098	3098					0.079752247287729
ALSEKIVSV	9	Unmodified	_ALSEKIVSV_					0	0	0		ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	MULTI-MSMS	A375_MHC_IP_R2	2	473.68389892578125	2	473.2844	944.554247	-0.9771	-0.00046245	0.36217	0.00017141	-0.61493	-0.00029103	473.2845002242221	52.376	0.55503	53.128	52.882	53.437	0.75225					22	10	3	0	0	0	0.0099679	2	19736	19736;19823		121.53	32.63	1	8399300			3180	3973	2060	2084	3099;3100	3099					0.079752247287729
ALSELLQQV	9	Unmodified	_ALSELLQQV_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-SECPEP	A375_MHC_IP_R1	1	500.1610412597656	2	500.787307	999.560061	-0.23763	-0.000119	1.0755	0.00053859	0.83785	0.00041958	500.7872916288822	110.69	0.71461	110.69	110.39	111.1	0					35	13	4	0	0	0	0.096726	1	40637	40637		71.134	31.176	1	3229500			3181	4710	2061	2085	3101	3101					0.06026323240428155
ALSELTQGV	9	Unmodified	_ALSELTQGV_					0	0	0		nc|ENSG00000138182|Q96Q89-4|KIF20B;KIF20B|p.E1695Gfs*11|1|0.6|ENSG00000138182|chr10:89768376-89768377|-/A|frameshift_variant;nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B	nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-4|KIF20B	MULTI-SECPEP	A375_MHC_IP_R1	1	459.6506042480469	2	459.250557	916.486562	-0.18467	-8.4809E-05	0.59777	0.00027453	0.4131	0.00018972	459.2505877518879	70.662	0.5619	70.662	70.392	70.953	0					19	10	3	0	0	0	0.50702	1	25677	25677		25.399	9.5521	1	1470300			3182	14633	2062	2086	3102	3102					0.024977747979505693
ALSELTQGV	9	Unmodified	_ALSELTQGV_					0	0	0		nc|ENSG00000138182|Q96Q89-4|KIF20B;KIF20B|p.E1695Gfs*11|1|0.6|ENSG00000138182|chr10:89768376-89768377|-/A|frameshift_variant;nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B	nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-4|KIF20B	MULTI-SECPEP	A375_MHC_IP_R2	2	459.651123046875	2	459.250557	916.486562	-0.30734	-0.00014114	0.72239	0.00033176	0.41505	0.00019061	459.25073646943247	69.882	0.50848	70.616	70.386	70.895	0.73421					22	9	3	0	0	0	0.10103	1	26517	26517		62.573	26.446	1	2534700			3183	14633	2062	2086	3103	3103					0.024977747979505693
ALSEMASEQLK	11	Unmodified	_ALSEMASEQLK_					0	0	0		nc|ENSG00000119392|Q53GS7-2|GLE1;ENSG00000119392|ENST00000309971|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	MULTI-SECPEP	A375_MHC_IP_R1	1	603.2269287109375	2	603.805371	1205.59619	-0.29246	-0.00017659	-2.658	-0.0016049	-2.9504	-0.0017815	604.3047881928693	93.543	0.35593	93.543	93.433	93.789	0					9	6	2	0	0	0	0.9754	1	34420	34420		12.241	5.5175	1	2533300			3184	3587	2063	2087	3104	3104					0.0016141235496434092
ALSEQILMV	9	Oxidation (M)	_ALSEQILM(Oxidation (M))V_		ALSEQILM(1)V		ALSEQILM(96)V	0	0	1		NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant;ENSG00000180530|ENST00000318948|NRIP1	NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant	NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	510.6754150390625	2	510.275718	1018.53688	-0.42137	-0.00021502	-0.42399	-0.00021635	-0.84536	-0.00043137	510.2755148556795	100.31	2.2255	100.31	99.673	101.9	0					79	43	3	0	0	0	0.010171	2	36925	36704;36925		96.111	34.753	1	4263000			3185	8302	2064	2088	3105;3106	3106		401			0.028355611314623275
ALSEQILMV	9	Oxidation (M)	_ALSEQILM(Oxidation (M))V_		ALSEQILM(1)V		ALSEQILM(140)V	0	0	1		NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant;ENSG00000180530|ENST00000318948|NRIP1	NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant	NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	510.1454772949219	2	510.275718	1018.53688	-0.40646	-0.0002074	-0.10965	-5.5953E-05	-0.51611	-0.00026336	510.2757020646893	98.381	0.86409	98.381	98.05	98.914	0					46	16	4	0	0	0	0.01091	1	36230	36230		144.35	69.421	1	18703000			3186	8302	2064	2088	3107	3107		401			0.028355611314623275
ALSEQILMV	9	Unmodified	_ALSEQILMV_					0	0	0		NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant;ENSG00000180530|ENST00000318948|NRIP1	NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant	NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	502.67889404296875	2	502.27826	1002.54197	0.14011	7.0376E-05	-0.54688	-0.00027468	-0.40676	-0.00020431	502.27797584928936	114.08	0.76642	114.08	113.8	114.57	0					27	14	3	0	0	0	0.026268	1	41816	41816		78.149	13.913	1	7853800			3187	8302	2064	2089	3108	3108					0.040798649940711584
ALSEQILMV	9	Unmodified	_ALSEQILMV_					0	0	0		NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant;ENSG00000180530|ENST00000318948|NRIP1	NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant	NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	502.6784973144531	2	502.27826	1002.54197	-0.40214	-0.00020199	-0.13163	-6.6114E-05	-0.53377	-0.0002681	502.27817874658047	113.2	0.71692	113.91	113.56	114.28	0.70985					28	13	3	0	0	0	0.021889	1	42657	42657		81.89	17.654	1	9612600			3188	8302	2064	2089	3109	3109					0.040798649940711584
ALSGHLETV	9	Unmodified	_ALSGHLETV_					0	0	0		nc|ENSG00000182718|P07355-2|ANXA2;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000182718|P07355-2|ANXA2	MULTI-SECPEP	A375_MHC_IP_R1	1	464.15057373046875	2	463.750724	925.486896	-0.0079705	-3.6963E-06	-0.023253	-1.0783E-05	-0.031223	-1.448E-05	463.7506809351052	39.161	1.167	39.161	38.73	39.896	0					60	22	5	0	0	0	0.004194	1	13314	13314		156.16	85.44	1	141620000			3189	8430;14909	2065	2090	3110	3110					0.02117194517813914
ALSGHLETV	9	Unmodified	_ALSGHLETV_					0	0	0		nc|ENSG00000182718|P07355-2|ANXA2;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000182718|P07355-2|ANXA2	MULTI-MSMS	A375_MHC_IP_R2	2	463.7002868652344	2	463.750724	925.486896	-0.91983	-0.00042657	0.30229	0.00014019	-0.61754	-0.00028639	463.75083161847897	38.298	1.278	39.073	38.636	39.914	0.77451					63	24	4	0	0	0	0.0090669	1	14213	14213		100.37	39.982	1	116450000			3190	8430;14909	2065	2090	3111	3111					0.02117194517813914
ALSGHVSTV	9	Unmodified	_ALSGHVSTV_					0	0	0		nc|ENSG00000119509|Q9Y283-2|INVS;ENSG00000119509|ENST00000262457|INVS	nc|ENSG00000119509|Q9Y283-2|INVS	nc|ENSG00000119509|Q9Y283-2|INVS	MULTI-MSMS	A375_MHC_IP_R1	1	436.13726806640625	2	435.737617	869.460681	-0.42955	-0.00018717	0.085136	3.7097E-05	-0.34442	-0.00015007	435.73760354403487	26.803	0.65429	26.803	26.626	27.28	0					16	12	2	0	0	0	0.0095277	1	8049	8049		108	47.607	1	7182100			3191	3599	2066	2091	3112	3112					0.02072925346340071
ALSGHVSTV	9	Unmodified	_ALSGHVSTV_					0	0	0		nc|ENSG00000119509|Q9Y283-2|INVS;ENSG00000119509|ENST00000262457|INVS	nc|ENSG00000119509|Q9Y283-2|INVS	nc|ENSG00000119509|Q9Y283-2|INVS	MULTI-MSMS	A375_MHC_IP_R2	2	436.13720703125	2	435.737617	869.460681	-0.68931	-0.00030036	0.086019	3.7482E-05	-0.60329	-0.00026288	435.7375676790936	26.171	0.55821	26.831	26.551	27.109	0.65992					16	10	2	0	0	0	0.010037	1	8850	8850		96.285	54.19	1	4211900			3192	3599	2066	2091	3113	3113					0.02072925346340071
ALSGLAVRL	9	Unmodified	_ALSGLAVRL_					0	0	0		nc|ENSG00000286075|A0A0C4DGP1|SMIM10L3;ENSG00000196972|ENST00000433425|SMIM10L2B;ENSG00000178947|ENST00000417443|SMIM10L2A;ENST00000533877.1_1_7:6381544-6388389:-|nuORF;ENSG00000184785|ENST00000330288|SMIM10	nc|ENSG00000286075|A0A0C4DGP1|SMIM10L3	nc|ENSG00000286075|A0A0C4DGP1|SMIM10L3	MULTI-MSMS	A375_MHC_IP_R1	1	450.68719482421875	2	450.287277	898.560001	-0.077538	-3.4914E-05	-0.1643	-7.398E-05	-0.24183	-0.00010889	450.287159154728	77.869	0.46001	77.869	77.69	78.15	0					13	8	2	0	0	0	0.054426	1	28434	28434		62.573	11.718	1	2092400			3193	8188	2067	2092	3114	3114					0.10666368031081674
ALSGLAVRL	9	Unmodified	_ALSGLAVRL_					0	0	0		nc|ENSG00000286075|A0A0C4DGP1|SMIM10L3;ENSG00000196972|ENST00000433425|SMIM10L2B;ENSG00000178947|ENST00000417443|SMIM10L2A;ENST00000533877.1_1_7:6381544-6388389:-|nuORF;ENSG00000184785|ENST00000330288|SMIM10	nc|ENSG00000286075|A0A0C4DGP1|SMIM10L3	nc|ENSG00000286075|A0A0C4DGP1|SMIM10L3	MULTI-MSMS	A375_MHC_IP_R2	2	450.6875	2	450.287277	898.560001	-0.29063	-0.00013087	0.042367	1.9077E-05	-0.24827	-0.00011179	450.2872210808134	76.898	0.50346	77.64	77.354	77.857	0.74293					20	9	3	0	0	0	0.12771	1	29197	29197		45.7	5.7423	1	1645400			3194	8188	2067	2092	3115	3115					0.10666368031081674
ALSGLPTSGS	10	Unmodified	_ALSGLPTSGS_					0	0	0			REV__ARID3B|p.P68S|1|0.52|ENSG00000179361|chr15:74544138-74544138|C/T|missense_variant	REV__ARID3B|p.P68S|1|0.52|ENSG00000179361|chr15:74544138-74544138|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	445.6709289550781	2	445.234907	888.455261	0.056929	2.5347E-05	0.10567	4.7046E-05	0.1626	7.2393E-05	445.2349157587592	51.296	0.5063	51.296	51.068	51.575	0					13	9	2	0	0	0	0.6806	1	18187	18187		14.838	2.3067	1	1521700	+		3195	15444	2068	2093	3116	3116					0.006572017638632133
ALSGLPTSGS	10	Unmodified	_ALSGLPTSGS_					0	0	0			REV__ARID3B|p.P68S|1|0.52|ENSG00000179361|chr15:74544138-74544138|C/T|missense_variant	REV__ARID3B|p.P68S|1|0.52|ENSG00000179361|chr15:74544138-74544138|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	445.234907	888.455261	0.056929	2.5347E-05	0.10567	4.7046E-05	0.1626	7.2393E-05	445.2349157587592	51.296	0.5063	51.296	51.068	51.575	0	-0.0077701	-0.00022358	NaN	14.838	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1521700	+		3196	15444	2068	2093							0.006572017638632133
ALSGTLSGV	9	Unmodified	_ALSGTLSGV_					0	0	0		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-SECPEP	A375_MHC_IP_R2	2	805.0239868164062	1	804.44616	803.438883	-1.2204	-0.00098176	0.28925	0.00023268	-0.93117	-0.00074908	804.4463375582145	61.502	0.65427	62.247	61.919	62.573	0.74503					29	12	3	0	0	0	0.010813	1	23335	23335		123.45	30.628	1	15042000			3197	2155	2069	2094	3117	3117					0.02930120597761743
ALSGTLSGV	9	Unmodified	_ALSGTLSGV_					0	0	0		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MATCH	A375_MHC_IP_R1	1		1	804.44616	803.438883	-0.32102	-0.00025824	-0.034531	-2.7778E-05	-0.35555	-0.00028602	804.4460520006425	62.275	0.71644	62.275	61.994	62.711	0	0.013794	-0.00012344	NaN	123.45	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15964000			3198	2155	2069	2094							0.02930120597761743
ALSHWASPA	9	Unmodified	_ALSHWASPA_					0	0	0		ENST00000484523.1_1_11:2335717-2337299:+|nuORF;ENST00000461200.5_1_11:2336930-2337299:+|nuORF	ENST00000484523.1_1_11:2335717-2337299:+|nuORF	ENST00000484523.1_1_11:2335717-2337299:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	469.65740966796875	2	470.237784	938.461016	-0.28519	-0.00013411	0.59911	0.00028172	0.31392	0.00014762	470.2377232064008	43.982	0.97007	43.982	43.757	44.727	0					25	18	2	0	0	0	0.52144	1	15501	15501		23.148	1.4018	1	1889300			3199	12182	2070	2095	3118	3118					-0.010676549338199948
ALSIQELVA	9	Unmodified	_ALSIQELVA_					0	0	0		nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1	nc|ENSG00000257923|P39880-6|CUX1	nc|ENSG00000257923|P39880-6|CUX1	MULTI-MSMS	A375_MHC_IP_R2	2	472.69989013671875	2	472.276575	942.538597	-0.58791	-0.00027766	0.2735	0.00012917	-0.31441	-0.00014849	472.2764427894042	82.598	0.45453	83.341	83.093	83.547	0.74293					12	8	2	0	0	0	0.17328	2	31391	31391;31425		39.957	3.9131	1	1022700			3200	9913	2071	2096	3119;3120	3119					0.06502938211713172
ALSKEGIVAL	10	Unmodified	_ALSKEGIVAL_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;CCT6A|p.L444Ffs*16|1|0.27|ENSG00000146731|chr7:56060920-56060921|-/CATT|frameshift_variant;ENST00000482776.1_1_7:56124009-56126486:+|nuORF	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-SECPEP	A375_MHC_IP_R1	1	501.205322265625	2	500.8055	999.596446	-0.3998	-0.00020022	0.046271	2.3173E-05	-0.35353	-0.00017705	500.80546508522315	64.267	0.86256	64.267	63.786	64.649	0					32	16	3	0	0	0	0.20239	1	23213	23213		63.227	7.0505	1	10961000			3201	5633	2072	2097	3121	3121					0.09663200137140393
ALSKEGIVAL	10	Unmodified	_ALSKEGIVAL_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;CCT6A|p.L444Ffs*16|1|0.27|ENSG00000146731|chr7:56060920-56060921|-/CATT|frameshift_variant;ENST00000482776.1_1_7:56124009-56126486:+|nuORF	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-SECPEP	A375_MHC_IP_R2	2	501.2055358886719	2	500.8055	999.596446	-0.70143	-0.00035128	-0.076626	-3.8375E-05	-0.77806	-0.00038965	500.8054198915348	72.568	0.96589	73.303	72.973	73.938	0.73541					41	18	3	0	0	0	0.028447	1	27490	27490		99.799	7.3075	1	14555000			3202	5633	2072	2097	3122	3122					0.09663200137140393
ALSKEGIVAL	10	Unmodified	_ALSKEGIVAL_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;CCT6A|p.L444Ffs*16|1|0.27|ENSG00000146731|chr7:56060920-56060921|-/CATT|frameshift_variant;ENST00000482776.1_1_7:56124009-56126486:+|nuORF	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-SECPEP	A375_MHC_IP_R2	2	501.20513916015625	2	500.8055	999.596446	-0.53572	-0.00026829	-0.10137	-5.0765E-05	-0.63708	-0.00031906	500.80534192168653	63.302	0.60997	64.042	63.734	64.344	0.74022					29	11	3	0	0	0	0.32288	1	23972	23972		59.368	23.756	1	8075200			3203	5633	2072	2097	3123	3123					0.09663200137140393
ALSKIFAV	8	Unmodified	_ALSKIFAV_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32;ENST00000523701.1_1_8:104413742-104414267:-|nuORF	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-SECPEP	A375_MHC_IP_R1	1	425.16534423828125	2	424.765646	847.516739	-0.19574	-8.3142E-05	0.18951	8.0496E-05	-0.0062291	-2.6459E-06	424.76569856668465	76.597	0.71287	76.597	76.37	77.083	0					17	13	2	0	0	0	0.25204	1	27948	27948		81.89	9.9679	1	1793000			3204	6894	2073	2098	3124	3124					0.08688178253794376
ALSKIFAV	8	Unmodified	_ALSKIFAV_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32;ENST00000523701.1_1_8:104413742-104414267:-|nuORF	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-SECPEP	A375_MHC_IP_R2	2	425.1655578613281	2	424.765646	847.516739	-0.16766	-7.1215E-05	-0.1148	-4.8763E-05	-0.28246	-0.00011998	424.76554350808107	75.67	0.86689	76.411	75.976	76.843	0.74052					25	16	2	0	0	0	0.20774	1	28695	28695		92.491	10.601	1	2183300			3205	6894	2073	2098	3125	3125					0.08688178253794376
ALSKLRRRWEL	11	Unmodified	_ALSKLRRRWEL_					0	0	0			REV__ENST00000456222.1_1_3:42605456-42610538:-|nuORF	REV__ENST00000456222.1_1_3:42605456-42610538:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	476.948974609375	3	476.624643	1426.8521	-0.34098	-0.00016252	-1.1427	-0.00054463	-1.4837	-0.00070715	476.62422413014457	142.3	1.4787	142.33	141.16	142.64	0.030731					38	28	2	0	0	0	1.0014	1	55281	55281		0.50596	0	1	3308100	+		3206	16983	2074	2099	3126	3126					0.1557490104507906
ALSKLSQL	8	Unmodified	_ALSKLSQL_					0	0	0		tr|U7SRN2|U7SRN2_FUSNUUPF0371proteinHMPREF1766_01593OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01593PE=3SV=1	tr|U7SRN2|U7SRN2_FUSNUUPF0371proteinHMPREF1766_01593OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01593PE=3SV=1	tr|U7SRN2|U7SRN2_FUSNUUPF0371proteinHMPREF1766_01593OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01593PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	430.66546630859375	2	430.26601	858.517468	-0.040388	-1.7377E-05	-0.41154	-0.00017707	-0.45193	-0.00019445	430.2656534855598	56.624	0.71169	56.624	56.244	56.956	0					28	13	3	0	0	0	0.51581	1	20271	20271		48.346	2.3249	1	4533300			3207	29616	2075	2100	3127	3127					0.08254972902852842
ALSLYCSIAP	10	Unmodified	_ALSLYCSIAP_					0	0	0		ENST00000425394.6_1_12:56711247-56712050:-|nuORF	ENST00000425394.6_1_12:56711247-56712050:-|nuORF	ENST00000425394.6_1_12:56711247-56712050:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	518.7001953125	2	519.270435	1036.52632	-0.1575	-8.1786E-05	0.85028	0.00044152	0.69278	0.00035974	519.270784595628	48.35	0.50648	48.35	48.122	48.629	0					16	9	2	0	0	0	0.90853	1	17038	17038		15.847	9.6414	1	7203300			3208	11788	2076	2101	3128	3128					0.009515784770201208
ALSNHLNAV	9	Unmodified	_ALSNHLNAV_					0	0	0		nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-3|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-7|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-6|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1	nc|ENSG00000126214|Q07866-8|KLC1	nc|ENSG00000126214|Q07866-8|KLC1	MULTI-MSMS	A375_MHC_IP_R1	1	470.6563720703125	2	469.756341	937.498129	-0.29819	-0.00014008	-1.3667	-0.00064201	-1.6649	-0.00078208	469.7561113638582	34.969	0.55909	34.969	34.81	35.369	0					20	10	3	0	0	0	0.32092	1	11614	11614		29.082	4.4077	1	5001500			3209	4027	2077	2102	3129	3129					0.02688016611944022
ALSNLEVTL	9	Unmodified	_ALSNLEVTL_					0	0	0		ENSG00000101311|ENST00000217289|FERMT1;nc|ENSG00000101311|Q9BQL6-2|FERMT1;nc|ENSG00000101311|Q9BQL6-4|FERMT1	ENSG00000101311|ENST00000217289|FERMT1;nc|ENSG00000101311|Q9BQL6-4|FERMT1	ENSG00000101311|ENST00000217289|FERMT1	MULTI-MSMS	A375_MHC_IP_R1	1	480.6739807128906	2	480.274032	958.533512	-0.36798	-0.00017673	0.48855	0.00023464	0.12057	5.7907E-05	480.2742624195509	104.51	0.60783	104.51	104.24	104.84	0					20	11	3	0	0	0	0.01001	1	38390	38390		123.45	15.454	1	2049400			3210	2281;14515	2078	2103	3130	3130					0.05258634349092972
ALSNLEVTL	9	Unmodified	_ALSNLEVTL_					0	0	0		ENSG00000101311|ENST00000217289|FERMT1;nc|ENSG00000101311|Q9BQL6-2|FERMT1;nc|ENSG00000101311|Q9BQL6-4|FERMT1	ENSG00000101311|ENST00000217289|FERMT1;nc|ENSG00000101311|Q9BQL6-4|FERMT1	ENSG00000101311|ENST00000217289|FERMT1	MULTI-MSMS	A375_MHC_IP_R2	2	480.6738586425781	2	480.274032	958.533512	-0.52777	-0.00025347	0.095871	4.6044E-05	-0.4319	-0.00020743	480.2741599914805	103.72	0.45758	104.48	104.24	104.7	0.76428					19	8	3	0	0	0	0.0099105	1	39271	39271		118.89	22.61	1	2984600			3211	2281;14515	2078	2103	3131	3131					0.05258634349092972
ALSPATPPAI	10	Unmodified	_ALSPATPPAI_					0	0	0			REV__nc|ENSG00000175727|Q9HAP2-3|MLXIP	REV__nc|ENSG00000175727|Q9HAP2-3|MLXIP	MULTI-SECPEP	A375_MHC_IP_R1	1	468.6105041503906	2	469.271293	936.528032	-0.33324	-0.00015638	0.48797	0.00022899	0.15472	7.2607E-05	469.27151547523994	83.251	0.55917	83.251	83.024	83.583	0					11	10	2	0	0	0	0.76414	1	30491	30491		20.454	0	1	924580	+		3212	21362	2079	2104	3132	3132					0.057229555572689605
ALSPEPNQL	9	Unmodified	_ALSPEPNQL_					0	0	0			REV__ENST00000498004.5_1_X:15768244-15782785:+|nuORF	REV__ENST00000498004.5_1_X:15768244-15782785:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	486.17138671875	2	484.756007	967.497461	-0.45216	-0.00021919	0.17547	8.5061E-05	-0.27669	-0.00013413	484.756035729249	43.382	2.0256	44.155	43.623	45.649	0.7724					90	39	5	0	0	0	0.4867	1	16205	16205		20.454	3.3407	1	274420000	+		3213	25475	2080	2105	3133	3133					0.01241177172244079
ALSPHNILL	9	Unmodified	_ALSPHNILL_					0	0	0		nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK	nc|ENSG00000145348|Q8TEA7-2|TBCK	nc|ENSG00000145348|Q8TEA7-2|TBCK	MULTI-MSMS	A375_MHC_IP_R2	2	489.02325439453125	2	489.292559	976.570566	-0.61677	-0.00030178	-0.63444	-0.00031043	-1.2512	-0.00061221	489.2919714441996	74.977	0.91333	75.715	75.264	76.178	0.73752					23	17	2	0	0	0	0.021889	1	28407	28407		81.89	17.654	1	3711400			3214	5553	2081	2106	3134	3134					0.0813435068552053
ALSPNNHEV	9	Unmodified	_ALSPNNHEV_					0	0	0		ENSG00000241685|ENST00000262942|ARPC1A	ENSG00000241685|ENST00000262942|ARPC1A	ENSG00000241685|ENST00000262942|ARPC1A	MULTI-SECPEP	A375_MHC_IP_R1	1	491.1430358886719	2	490.743431	979.472308	-0.53706	-0.00026356	-0.27095	-0.00013297	-0.80801	-0.00039653	490.74330310137185	24.067	0.40699	24.067	23.889	24.296	0					14	7	3	0	0	0	0.04395	1	6743	6743		81.89	25.713	1	32305000			3215	9786	2082	2107	3135	3135					-0.01824877630338051
ALSPNNHEV	9	Unmodified	_ALSPNNHEV_					0	0	0		ENSG00000241685|ENST00000262942|ARPC1A	ENSG00000241685|ENST00000262942|ARPC1A	ENSG00000241685|ENST00000262942|ARPC1A	MULTI-SECPEP	A375_MHC_IP_R2	2	491.14306640625	2	490.743431	979.472308	-0.84096	-0.00041269	-0.3244	-0.0001592	-1.1654	-0.00057189	490.74332889492894	23.424	0.40439	24.054	23.878	24.283	0.63014					11	7	2	0	0	0	0.056023	1	7530	7530		66.457	18.708	1	18311000			3216	9786	2082	2107	3136	3136					-0.01824877630338051
ALSPQLQQL	9	Unmodified	_ALSPQLQQL_					0	0	0		ENSG00000141456|ENST00000572293|PELP1;PELP1|p.C237F|1|0.18|ENSG00000141456|chr17:4676500-4676500|C/A|missense_variant	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MULTI-SECPEP	A375_MHC_IP_R1	1	499.6873474121094	2	499.287474	996.560395	-0.39793	-0.00019868	0.56273	0.00028096	0.1648	8.2283E-05	499.287723854034	79.819	0.46053	79.819	79.574	80.034	0					13	8	2	0	0	0	0.056023	1	29152	29152		85.642	23.069	1	2074900			3217	5243	2083	2108	3137	3137					0.06197742960296182
ALSQDIPEI	9	Unmodified	_ALSQDIPEI_					0	0	0		nc|ENSG00000038358|Q6P2E9-2|EDC4;ENSG00000038358|ENST00000358933|EDC4	nc|ENSG00000038358|Q6P2E9-2|EDC4	nc|ENSG00000038358|Q6P2E9-2|EDC4	MULTI-MSMS	A375_MHC_IP_R1	1	493.6636657714844	2	493.263665	984.512776	-0.29274	-0.0001444	0.33737	0.00016641	0.044624	2.2011E-05	493.26378193766493	93.66	0.91402	93.66	93.176	94.09	0					64	17	5	0	0	0	0.0092471	2	34334	34334;34539		103.35	24.625	1	57129000			3218	1152	2084	2109	3138;3139	3138					0.01990043969431099
ALSQDIPEI	9	Unmodified	_ALSQDIPEI_					0	0	0		nc|ENSG00000038358|Q6P2E9-2|EDC4;ENSG00000038358|ENST00000358933|EDC4	nc|ENSG00000038358|Q6P2E9-2|EDC4	nc|ENSG00000038358|Q6P2E9-2|EDC4	MULTI-MSMS	A375_MHC_IP_R2	2	493.66339111328125	2	493.263665	984.512776	-0.42452	-0.0002094	0.34898	0.00017214	-0.075542	-3.7262E-05	493.26380109138074	92.958	0.86232	93.697	93.19	94.053	0.73901					63	16	5	0	0	0	0.0090323	2	35248	35248;35452		99.799	10.845	1	65598000			3219	1152	2084	2109	3140;3141	3140					0.01990043969431099
ALSQPGPHSV	10	Unmodified	_ALSQPGPHSV_					0	0	0		ENSG00000122728|ENST00000242310|TAF1L;nc|ENSG00000147133|P21675-25|TAF1;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675|TAF1;ENSG00000147133|ENST00000423759|TAF1;nc|ENSG00000147133|P21675-1|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-13|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-21|TAF1;nc|ENSG00000147133|P21675-24|TAF1;nc|ENSG00000147133|P21675-23|TAF1;TAF1|p.L947Rfs*2|1|0.51|ENSG00000147133|chrX:71392630-71392630|T/-|frameshift_variant	ENSG00000122728|ENST00000242310|TAF1L	ENSG00000122728|ENST00000242310|TAF1L	MULTI-MSMS	A375_MHC_IP_R2	2	496.6598815917969	2	496.761623	991.508694	-0.71951	-0.00035742	0.1318	6.5471E-05	-0.58771	-0.00029195	496.76163048329965	35.39	1.0619	36.154	35.525	36.587	0.76338					50	20	4	0	0	0	0.69833	1	12716	12716		13.042	0	1	95701000			3220	3804	2085	2110	3142	3142					0.012599992663922421
ALSRGHGK	8	Unmodified	_ALSRGHGK_					0	0	0		nc|ENSG00000157445|Q8IZS8-2|CACNA2D3;ENSG00000157445|ENST00000474759|CACNA2D3	nc|ENSG00000157445|Q8IZS8-2|CACNA2D3	nc|ENSG00000157445|Q8IZS8-2|CACNA2D3	MULTI-MSMS	A375_MHC_IP_R1	1	413.6383056640625	2	413.238119	824.461684	0.28589	0.00011814	0.2217	9.1615E-05	0.50759	0.00020976	413.2381298573126	96.521	1.823	96.521	95.465	97.288	0					59	35	2	0	0	0	0.7773	1	35585	35585		4.756	0	1	1746500			3221	6244	2086	2111	3143	3143					0.04243184505912723
ALSRGSSLV	9	Unmodified	_ALSRGSSLV_					0	0	0			REV__SPTBN5|p.Q2777Rfs*33|1|0.22|ENSG00000137877|chr15:41857606-41857609|CTGG/-|frameshift_variant	REV__SPTBN5|p.Q2777Rfs*33|1|0.22|ENSG00000137877|chr15:41857606-41857609|CTGG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	444.6815490722656	2	445.258717	888.50288	0.013024	5.7989E-06	-0.3081	-0.00013719	-0.29508	-0.00013139	445.25854522055465	46.068	0.85861	46.068	45.789	46.647	0					41	16	4	0	0	0	0.38578	1	16119	16119		34.402	4.5611	1	40801000	+		3222	19047	2087	2112	3144	3144					0.05416900754710241
ALSRLTATS	9	Unmodified	_ALSRLTATS_					0	0	0		ENST00000574594.5_1_16:4526450-4533743:+|nuORF;ENST00000421525.5_3_19:9730200-9731858:-|nuORF	ENST00000574594.5_1_16:4526450-4533743:+|nuORF	ENST00000574594.5_1_16:4526450-4533743:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	460.66387939453125	2	460.263999	918.513445	-0.19197	-8.8358E-05	-0.40297	-0.00018547	-0.59494	-0.00027383	460.2636949936597	40.329	0.45801	40.329	40.151	40.609	0					20	8	3	0	0	0	0.60917	1	13851	13851		25.399	1.3787	1	12093000			3223	11738	2088	2113	3145	3145					0.050928834091337194
ALSRLTATS	9	Unmodified	_ALSRLTATS_					0	0	0		ENST00000574594.5_1_16:4526450-4533743:+|nuORF;ENST00000421525.5_3_19:9730200-9731858:-|nuORF	ENST00000574594.5_1_16:4526450-4533743:+|nuORF	ENST00000574594.5_1_16:4526450-4533743:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	460.66357421875	2	460.263999	918.513445	-0.46837	-0.00021557	-0.22258	-0.00010245	-0.69095	-0.00031802	460.2637411084044	39.487	0.60942	40.262	40.016	40.626	0.77451					20	11	3	0	0	0	0.69507	1	14576	14576		19.257	6.2145	1	8667100			3224	11738	2088	2113	3146	3146					0.050928834091337194
ALSRVSVNV	9	Unmodified	_ALSRVSVNV_					0	0	0		nc|ENSG00000154743|Q8NCE0-5|TSEN2;nc|ENSG00000154743|Q8NCE0-4|TSEN2;nc|ENSG00000154743|Q8NCE0-3|TSEN2;nc|ENSG00000154743|Q8NCE0-2|TSEN2;ENSG00000154743|ENST00000284995|TSEN2	nc|ENSG00000154743|Q8NCE0-5|TSEN2	nc|ENSG00000154743|Q8NCE0-5|TSEN2	MULTI-SECPEP	A375_MHC_IP_R1	1	473.1799011230469	2	472.779816	943.545079	-0.44978	-0.00021265	0.17679	8.3581E-05	-0.273	-0.00012907	472.77994785231317	43.884	0.51003	43.884	43.706	44.216	0					16	9	2	0	0	0	0.24324	1	15290	15290		53.833	8.1332	1	2858400			3225	6105	2089	2114	3147	3147					0.07104876163100471
ALSRVSVNV	9	Unmodified	_ALSRVSVNV_					0	0	0		nc|ENSG00000154743|Q8NCE0-5|TSEN2;nc|ENSG00000154743|Q8NCE0-4|TSEN2;nc|ENSG00000154743|Q8NCE0-3|TSEN2;nc|ENSG00000154743|Q8NCE0-2|TSEN2;ENSG00000154743|ENST00000284995|TSEN2	nc|ENSG00000154743|Q8NCE0-5|TSEN2	nc|ENSG00000154743|Q8NCE0-5|TSEN2	MULTI-SECPEP	A375_MHC_IP_R2	2	473.1798095703125	2	472.779816	943.545079	-0.46615	-0.00022039	-0.080983	-3.8287E-05	-0.54713	-0.00025867	472.77969420165084	43.061	0.60767	43.833	43.573	44.181	0.7724					18	11	2	0	0	0	0.38578	1	16038	16038		27.629	0	1	2481700			3226	6105	2089	2114	3148	3148					0.07104876163100471
ALSSLLHAL	9	Unmodified	_ALSSLLHAL_					0	0	0		ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	463.17901611328125	2	462.779285	923.544017	-0.20503	-9.4882E-05	0.50516	0.00023378	0.30013	0.00013889	462.77949200626585	91.816	0.8597	91.816	91.452	92.312	0					35	16	4	0	0	0	0.054184	1	33693	33693		81.864	0	1	15696000			3227	12540	2090	2115	3149	3149					0.0791866179419003
ALSSLLHAL	9	Unmodified	_ALSSLLHAL_					0	0	0		ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	463.17877197265625	2	462.779285	923.544017	-0.43366	-0.00020069	-0.12452	-5.7625E-05	-0.55818	-0.00025831	462.7791590309618	90.805	0.81021	91.539	91.211	92.021	0.7345					40	15	4	0	0	0	0.011416	1	34517	34517		114.94	0	1	10046000			3228	12540	2090	2115	3150	3150					0.0791866179419003
ALSSVVVDP	9	Unmodified	_ALSSVVVDP_					0	0	0		nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG	nc|ENSG00000042832|P01266-2|TG	nc|ENSG00000042832|P01266-2|TG	MULTI-MSMS	A375_MHC_IP_R2	2	443.660888671875	2	443.74765	885.480748	-0.54711	-0.00024278	1.8358	0.00081462	1.2887	0.00057184	443.7481217226198	26.868	0.66428	27.528	27.212	27.876	0.65992					16	12	2	0	0	0	0.65721	1	9121	9121		10.824	0	1	1999000			3229	1178	2091	2116	3151	3151					0.03342676286297319
ALSVEQRSL	9	Unmodified	_ALSVEQRSL_					0	0	0			REV__SERPINI1|p.P263S|1|0.38|ENSG00000163536|chr3:167794730-167794730|C/T|missense_variant	REV__SERPINI1|p.P263S|1|0.38|ENSG00000163536|chr3:167794730-167794730|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	501.1783447265625	2	501.782556	1001.55056	-0.36195	-0.00018162	0.7072	0.00035486	0.34525	0.00017324	501.7829011639046	60.031	0.35667	60.031	59.803	60.159	0					9	6	2	0	0	0	0.69504	1	21522	21522		7.9102	3.9658	1	1203500	+		3230	27944	2092	2117	3152	3152					0.04984554954910436
ALSVLSASTS	10	Unmodified	_ALSVLSASTS_					0	0	0			REV__ENSG00000260903|ENST00000562532|XKR7	REV__ENSG00000260903|ENST00000562532|XKR7	MULTI-MSMS	A375_MHC_IP_R2	2	468.6552734375	2	468.25584	934.497126	-0.55493	-0.00025985	-0.56244	-0.00026337	-1.1174	-0.00052322	468.2555261043434	109.72	2.4977	110.46	108.6	111.1	0.74683					70	48	2	0	0	0	0.71245	1	40863	40863		6.7232	6.7232	1	2362200	+		3231	22908	2093	2118	3153	3153					0.027257574523900985
ALSVLSASTS	10	Unmodified	_ALSVLSASTS_					0	0	0			REV__ENSG00000260903|ENST00000562532|XKR7	REV__ENSG00000260903|ENST00000562532|XKR7	MULTI-SECPEP	A375_MHC_IP_R2	2	468.6552734375	2	468.25584	934.497126	-0.55493	-0.00025985	-0.56244	-0.00026337	-1.1174	-0.00052322	468.2555261043434	109.72	2.4977	110.46	108.6	111.1	0.74683					70	48	2	0	0	0	0.93799	1	40863	40863		6.7232	6.7232	1	2362200	+		3232	22908	2093	2118	3154	3154					0.027257574523900985
ALTAAATLSV	10	Unmodified	_ALTAAATLSV_					0	0	0		ENSG00000100084|ENST00000263208|HIRA;ENST00000509549.5_1_22:19341546-19435194:-|nuORF	ENSG00000100084|ENST00000263208|HIRA	ENSG00000100084|ENST00000263208|HIRA	MULTI-MSMS	A375_MHC_IP_R1	1	459.6874084472656	2	459.26875	916.522947	0.24002	0.00011023	-0.39671	-0.0001822	-0.15669	-7.1963E-05	459.26850427103443	48.926	1.4186	48.926	48.223	49.642	0					70	27	3	0	0	0	0.011448	2	17328	17328;17357		111.29	15.002	1	30919000			3233	2113	2094	2119	3155;3156	3155					0.06134651694662807
ALTAAATLSV	10	Unmodified	_ALTAAATLSV_					0	0	0		ENSG00000100084|ENST00000263208|HIRA;ENST00000509549.5_1_22:19341546-19435194:-|nuORF	ENSG00000100084|ENST00000263208|HIRA	ENSG00000100084|ENST00000263208|HIRA	MULTI-SECPEP	A375_MHC_IP_R2	2	459.66864013671875	2	459.26875	916.522947	-0.29314	-0.00013463	-0.00134	-6.1543E-07	-0.29448	-0.00013525	459.26866432858577	48.095	1.3143	48.857	48.123	49.438	0.76127					68	25	4	0	0	0	0.023713	1	17989	17989		108	7.6255	1	39588000			3234	2113	2094	2119	3157	3157					0.06134651694662807
ALTAALVKV	9	Unmodified	_ALTAALVKV_					0	0	0		nc|ENSG00000174669|Q14542-3|SLC29A2;nc|ENSG00000174669|Q14542-4|SLC29A2;ENSG00000174669|ENST00000357440|SLC29A2	nc|ENSG00000174669|Q14542-3|SLC29A2	nc|ENSG00000174669|Q14542-3|SLC29A2	MULTI-SECPEP	A375_MHC_IP_R2	2	443.6793518066406	2	443.292028	884.569503	-0.4608	-0.00020427	1.6415	0.00072768	1.1807	0.00052341	443.2925182178425	66.639	0.30609	67.376	67.24	67.546	0.73631					6	5	2	0	0	0	0.63327	1	25279	25279		18.146	8.0724	1	371880			3235	7894	2095	2120	3158	3158					0.12260136316604076
ALTAHGCLPV	10	Unmodified	_ALTAHGCLPV_					0	0	0			REV__ENST00000478192.1_1_10:70055990-70056739:-|nuORF	REV__ENST00000478192.1_1_10:70055990-70056739:-|nuORF	MSMS	A375_MHC_IP_R1	1	491.2200012207031	2	491.262945	980.511337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.931	1	89.931	89.431	90.431	0								0	0	0	0.15047	1	33046	33046		16.942	3.4344	1		+		3236	17519	2096	2121	3159	3159					0.020301313996924364
ALTALQNYL	9	Unmodified	_ALTALQNYL_					0	0	0		ENSG00000008196|ENST00000393655|TFAP2B;nc|ENSG00000008196|Q92481-2|TFAP2B	ENSG00000008196|ENST00000393655|TFAP2B	ENSG00000008196|ENST00000393655|TFAP2B	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1266174316406	2	503.782025	1005.5495	-0.46533	-0.00023442	-0.058028	-2.9233E-05	-0.52336	-0.00026366	504.28362541374344	111.98	0.40881	112.7	112.56	112.97	0.72458					11	7	2	0	0	0	0.14422	1	42201	42201		36.127	13.391	1	1170600			3237	954	2097	2122	3160	3160					0.04694340585979262
ALTALQNYL	9	Unmodified	_ALTALQNYL_					0	0	0		ENSG00000008196|ENST00000393655|TFAP2B;nc|ENSG00000008196|Q92481-2|TFAP2B	ENSG00000008196|ENST00000393655|TFAP2B	ENSG00000008196|ENST00000393655|TFAP2B	MULTI-MATCH	A375_MHC_IP_R1	1		2	503.782025	1005.5495	0.017674	8.904E-06	-0.56525	-0.00028476	-0.54757	-0.00027586	503.78208411526833	112.92	0.50322	112.92	112.69	113.19	0	0.10659	-0.00033479	NaN	36.127	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1320300			3238	954	2097	2122							0.04694340585979262
ALTATSYSL	9	Unmodified	_ALTATSYSL_					0	0	0			REV__ENSG00000149635|ENST00000279028|OCSTAMP	REV__ENSG00000149635|ENST00000279028|OCSTAMP	MSMS	A375_MHC_IP_R1	1	463.7005310058594	2	463.745108	925.475663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.745	1	39.745	39.245	40.245	0								0	0	0	0.13805	1	13611	13611		30.225	1.738	1		+		3239	19693	2098	2123	3161	3161					0.009943724236563867
ALTAVSSQL	9	Unmodified	_ALTAVSSQL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.S3306Afs*6|1|0.29|ENSG00000086758|chrX:53549078-53549079|-/ACGC|frameshift_variant	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	A375_MHC_IP_R1	1	889.8386840820312	1	889.498923	888.491647	-0.3221	-0.00028651	-0.2307	-0.00020521	-0.5528	-0.00049172	889.4987490571789	65.231	0.35728	65.231	65.105	65.462	0					10	6	2	0	0	0	0.23894	1	23641	23641		47.594	17.754	1	948410			3240	1846	2099	2124	3162	3162					0.04294078660575451
ALTDFVRSV	9	Unmodified	_ALTDFVRSV_					0	0	0		ENSG00000112514|ENST00000488034|CUTA;ENST00000465956.1_1_6:33384429-33385110:-|nuORF;nc|ENSG00000112514|O60888-3|CUTA;nc|ENSG00000112514|O60888-2|CUTA	ENSG00000112514|ENST00000488034|CUTA	ENSG00000112514|ENST00000488034|CUTA	MULTI-SECPEP	A375_MHC_IP_R1	1	504.6793212890625	2	504.279649	1006.54475	-0.57631	-0.00029062	0.063183	3.1862E-05	-0.51312	-0.00025876	504.2797257250572	85.049	0.91756	85.049	84.647	85.565	0					32	17	3	0	0	0	0.30133	1	31141	31141		43.982	5.8063	1	6552600			3241	3092	2100	2125	3163	3163					0.0417345644324314
ALTDWGRRP	9	Unmodified	_ALTDWGRRP_					0	0	0		ENST00000512718.7_1_5:122848133-122888819:+|nuORF;ENST00000511130.6_1_5:122848133-122909123:+|nuORF;ENST00000345990.8_2_5:122847977-122881201:+|nuORF	ENST00000512718.7_1_5:122848133-122888819:+|nuORF	ENST00000512718.7_1_5:122848133-122888819:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	357.9309997558594	3	357.861319	1070.56213	0.12999	4.6518E-05	-0.49431	-0.00017689	-0.36432	-0.00013038	357.8611245095499	50.118	0.3581	50.118	49.896	50.254	0					11	6	2	0	0	0	0.74768	1	17732	17732		2.7352	2.7352	1	1810000			3242	10909	2101	2126	3164	3164					0.02966796768896529
ALTDWGRRP	9	Unmodified	_ALTDWGRRP_					0	0	0		ENST00000512718.7_1_5:122848133-122888819:+|nuORF;ENST00000511130.6_1_5:122848133-122909123:+|nuORF;ENST00000345990.8_2_5:122847977-122881201:+|nuORF	ENST00000512718.7_1_5:122848133-122888819:+|nuORF	ENST00000512718.7_1_5:122848133-122888819:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	357.861319	1070.56213	0.12999	4.6518E-05	-0.49431	-0.00017689	-0.36432	-0.00013038	357.8611245095499	50.118	0.3581	50.118	49.896	50.254	0	0.12487	2.1756E-05	NaN	2.7352	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1810000			3243	10909	2101	2126							0.02966796768896529
ALTGHLEEV	9	Unmodified	_ALTGHLEEV_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	A375_MHC_IP_R1	1	484.6639709472656	2	484.756007	967.497461	-0.098992	-4.7987E-05	-0.11499	-5.5743E-05	-0.21398	-0.00010373	484.7559118898648	44.241	1.8797	44.241	43.757	45.636	0					100	36	6	0	0	0	0.0097736	4	15529	15427;15459;15529;15600		112.59	52.204	1	294590000			3244	4636	2102	2127	3165;3166;3167;3168	3167					0.012411771722327103
ALTGHLEEV	9	Unmodified	_ALTGHLEEV_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	A375_MHC_IP_R2	2	484.64105224609375	2	484.756007	967.497461	-0.45216	-0.00021919	0.17547	8.5061E-05	-0.27669	-0.00013413	484.756035729249	43.382	2.0256	44.155	43.623	45.649	0.7724					90	39	5	0	0	0	0.0053385	2	16230	16230;16329		162.95	88.528	1	274420000			3245	4636	2102	2127	3169;3170	3169					0.012411771722327103
ALTGTSILI	9	Unmodified	_ALTGTSILI_					0	0	0		tr|U7SSU4|U7SSU4_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01499PE=3SV=1	tr|U7SSU4|U7SSU4_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01499PE=3SV=1	tr|U7SSU4|U7SSU4_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01499PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	889.263671875	1	888.54006	887.532783	0.0070265	6.2433E-06	-1.014	-0.00090099	-1.007	-0.00089474	888.5401648138171	111.85	0.35767	111.85	111.62	111.98	0					9	6	2	0	0	0	0.061132	1	40979	40979		57.471	6.6163	1	2436400			3246	29651	2103	2128	3171	3171					0.08451839700046548
ALTGYLHTI	9	Unmodified	_ALTGYLHTI_					0	0	0		ENST00000471788.1_1_2:207651391-207655428:+|nuORF;nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000487777.5_1_2:207631381-207653673:+|nuORF;ENSG00000118246|ENST00000402774|FASTKD2	ENST00000471788.1_1_2:207651391-207655428:+|nuORF	ENST00000471788.1_1_2:207651391-207655428:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	495.176025390625	2	494.776742	987.538931	-0.33141	-0.00016397	-0.66739	-0.00033021	-0.9988	-0.00049418	494.7764681897509	73.106	0.607	73.106	72.83	73.437	0					19	11	2	0	0	0	0.05755	1	26607	26607		71.134	31.176	1	3459100			3247	3533	2104	2129	3172	3172					0.0446635793156247
ALTGYLHTI	9	Unmodified	_ALTGYLHTI_					0	0	0		ENST00000471788.1_1_2:207651391-207655428:+|nuORF;nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000487777.5_1_2:207631381-207653673:+|nuORF;ENSG00000118246|ENST00000402774|FASTKD2	ENST00000471788.1_1_2:207651391-207655428:+|nuORF	ENST00000471788.1_1_2:207651391-207655428:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1886291503906	2	494.776742	987.538931	-0.68427	-0.00033856	-0.30102	-0.00014894	-0.98529	-0.0004875	494.7766635085782	72.192	0.55569	72.926	72.669	73.225	0.73421					19	10	2	0	0	0	0.14422	1	27427	27427		43.858	16.975	1	2994900			3248	3533	2104	2129	3173	3173					0.0446635793156247
ALTHADAQGG	10	Unmodified	_ALTHADAQGG_					0	0	0			REV__PPFIA1|p.S620G|1|0.18|ENSG00000131626|chr11:70343819-70343819|A/G|missense_variant	REV__PPFIA1|p.S620G|1|0.18|ENSG00000131626|chr11:70343819-70343819|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	470.6661682128906	2	470.727781	939.441008	-0.70295	-0.0003309	-0.25603	-0.00012052	-0.95898	-0.00045142	470.7278462027391	26.296	0.45675	26.296	26.118	26.575	0					13	8	2	0	0	0	0.66712	1	7760	7760		15.847	1.0089	1	2501100	+		3249	27827	2105	2130	3174	3174					-0.03113450664420725
ALTHADAQGG	10	Unmodified	_ALTHADAQGG_					0	0	0			REV__PPFIA1|p.S620G|1|0.18|ENSG00000131626|chr11:70343819-70343819|A/G|missense_variant	REV__PPFIA1|p.S620G|1|0.18|ENSG00000131626|chr11:70343819-70343819|A/G|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	470.727781	939.441008	-1.0482	-0.00049341	-0.28546	-0.00013437	-1.3336	-0.00062778	470.7274991225901	25.764	0.30571	26.424	26.296	26.602	0.65992	0.063662	-1.9219E-05	NaN	15.847	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1703000	+		3250	27827	2105	2130							-0.03113450664420725
ALTKDTAVAL	10	Unmodified	_ALTKDTAVAL_					0	0	0			REV__nc|ENSG00000173826|Q9H252-2|KCNH6	REV__nc|ENSG00000173826|Q9H252-2|KCNH6	MULTI-SECPEP	A375_MHC_IP_R2	2	502.1949768066406	2	501.795132	1001.57571	-0.50227	-0.00025204	-0.53207	-0.00026699	-1.0343	-0.00051903	501.7947668889916	68.553	0.8113	69.288	68.968	69.779	0.73511					30	15	3	0	0	0	0.72086	1	25972	25972		18.146	0	1	3806200	+		3251	21250	2106	2131	3175	3175					0.07498609757453778
ALTLTRAQL	9	Unmodified	_ALTLTRAQL_					0	0	0			REV__NES|p.P383L|1|0.46|ENSG00000132688|chr1:156673040-156673040|G/A|missense_variant	REV__NES|p.P383L|1|0.46|ENSG00000132688|chr1:156673040-156673040|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	494.20330810546875	2	493.803291	985.59203	-0.46537	-0.0002298	0.532	0.0002627	0.066635	3.2905E-05	493.8031999301086	67.618	0.6104	68.354	68.001	68.612	0.73631					16	11	2	0	0	0	0.58271	1	25672	25672		20.454	7.9221	1	1583100	+		3252	27593	2107	2132	3176	3176					0.09865735714231505
ALTPRTEE	8	Unmodified	_ALTPRTEE_					0	0	0		nc|ENSG00000081189|Q06413-6|MEF2C;nc|ENSG00000081189|Q06413-5|MEF2C	nc|ENSG00000081189|Q06413-6|MEF2C	nc|ENSG00000081189|Q06413-6|MEF2C	MULTI-MSMS	A375_MHC_IP_R2	2	458.55035400390625	2	458.740357	915.46616	-0.28876	-0.00013247	0.26799	0.00012294	-0.020772	-9.5287E-06	458.74041611961417	83.949	0.35905	84.689	84.458	84.817	0.73962					10	6	2	0	0	0	0.7758	1	31848	31848		10.183	4.4515	1	707740			3253	14490	2108	2133	3177	3177					0.005046041381433497
ALTPVVVTL	9	Unmodified	_ALTPVVVTL_					0	0	0		ENSG00000135446|ENST00000257904|CDK4;nc|ENSG00000135446|P11802-2|CDK4	ENSG00000135446|ENST00000257904|CDK4	ENSG00000135446|ENST00000257904|CDK4	MULTI-SECPEP	A375_MHC_IP_R2	2	912.9752197265625	1	912.576445	911.569169	-0.2355	-0.00021491	0.22915	0.00020912	-0.0063479	-5.793E-06	912.5765811874737	117.39	0.55623	118.05	117.73	118.29	0.65961					24	10	3	0	0	0	0.35487	1	44530	44530		36.127	17.992	1	31634000			3254	4684	2109	2134	3178	3178					0.10984716596760791
ALTPVVVTL	9	Unmodified	_ALTPVVVTL_					0	0	0		ENSG00000135446|ENST00000257904|CDK4;nc|ENSG00000135446|P11802-2|CDK4	ENSG00000135446|ENST00000257904|CDK4	ENSG00000135446|ENST00000257904|CDK4	MULTI-MATCH	A375_MHC_IP_R1	1		1	912.576445	911.569169	-0.037821	-3.4514E-05	-0.15658	-0.00014289	-0.1944	-0.0001774	912.5758885117672	118.3	0.45657	118.3	117.97	118.42	0	0.12536	-0.00014442	NaN	36.127	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49072000			3255	4684	2109	2134							0.10984716596760791
ALTQNDIKK	9	Unmodified	_ALTQNDIKK_					0	0	0		ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1380615234375	2	515.798206	1029.58186	-0.71792	-0.0003703	-0.41745	-0.00021532	-1.1354	-0.00058562	515.7980475354224	30.972	0.40594	30.972	30.754	31.16	0					11	7	2	0	0	0	0.73008	1	9961	9961		17.113	9.2027	1	1302100			3256	9324	2110	2135	3179	3179					0.06825127988986424
ALTRALALA	9	Unmodified	_ALTRALALA_					0	0	0		ENSG00000151176|ENST00000280800|PLBD2;nc|ENSG00000151176|Q8NHP8-2|PLBD2;PLBD2|p.S157Afs*7|1|0.68|ENSG00000151176|chr12:113372732-113372732|G/-|frameshift_variant	ENSG00000151176|ENST00000280800|PLBD2	ENSG00000151176|ENST00000280800|PLBD2	MULTI-SECPEP	A375_MHC_IP_R1	1	450.68743896484375	2	450.287277	898.560001	-0.13453	-6.0578E-05	0.71636	0.00032257	0.58183	0.00026199	450.2875536612083	60.092	0.5089	60.092	59.854	60.363	0					20	9	3	0	0	0	0.55534	1	21614	21614		26.021	10.772	1	3231400			3257	5885	2111	2136	3180	3180					0.10666368031070306
ALTRALALA	9	Unmodified	_ALTRALALA_					0	0	0		ENSG00000151176|ENST00000280800|PLBD2;nc|ENSG00000151176|Q8NHP8-2|PLBD2;PLBD2|p.S157Afs*7|1|0.68|ENSG00000151176|chr12:113372732-113372732|G/-|frameshift_variant	ENSG00000151176|ENST00000280800|PLBD2	ENSG00000151176|ENST00000280800|PLBD2	MULTI-MSMS	A375_MHC_IP_R2	2	450.68701171875	2	450.287277	898.560001	-0.68674	-0.00030923	-0.063305	-2.8505E-05	-0.75005	-0.00033774	450.28719735536174	59.078	0.45671	59.825	59.59	60.047	0.74714					18	8	3	0	0	0	0.12748	1	22345	22345		45.74	7.5887	1	2709900			3258	5885	2111	2136	3181	3181					0.10666368031070306
ALTRTLKVI	9	Unmodified	_ALTRTLKVI_					0	0	0			REV__tr|U7SG82|U7SG82_FUSNUUPF0324membraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02215PE=3SV=1	REV__tr|U7SG82|U7SG82_FUSNUUPF0324membraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02215PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	507.442626953125	2	507.837134	1013.65972	-0.29491	-0.00014977	-0.39661	-0.00020141	-0.69152	-0.00035118	507.8369745688045	56.136	0.40572	56.136	55.941	56.347	0					12	7	2	0	0	0	0.78348	1	20148	20148		7.9102	0	1	1780000	+		3259	28177	2112	2137	3182	3182					0.15343185645053836
ALTSLELEL	9	Unmodified	_ALTSLELEL_					0	0	0		ENSG00000179862|ENST00000372638|CITED4	ENSG00000179862|ENST00000372638|CITED4	ENSG00000179862|ENST00000372638|CITED4	MULTI-MSMS	A375_MHC_IP_R1	1	989.647216796875	1	988.556104	987.548827	0.059033	5.8357E-05	2.2131	0.0021878	2.2722	0.0022462	988.5582242875065	125.1	0.25048	125.1	125	125.25	0					5	4	2	0	0	0	0.17328	1	47366	47366		39.957	5.8549	1	18156000			3260	8254	2113	2138	3183	3183					0.0545550114627531
ALTSLLKTV	9	Unmodified	_ALTSLLKTV_					0	0	0		ENST00000565642.5_1_16:71777395-71799448:-|nuORF;ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	473.7025146484375	2	473.302593	944.590633	-0.28751	-0.00013608	0.55782	0.00026402	0.27031	0.00012794	473.30273532483926	82.477	0.60962	82.477	82.214	82.823	0					17	11	2	0	0	0	0.0099679	1	30171	30171		121.53	62.855	1	3743700			3261	7107	2114	2139	3184	3184					0.11612101625462401
ALTSLLKTV	9	Unmodified	_ALTSLLKTV_					0	0	0		ENST00000565642.5_1_16:71777395-71799448:-|nuORF;ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	473.302593	944.590633	-0.65024	-0.00030776	0.02332	1.1037E-05	-0.62692	-0.00029672	473.302585999074	81.461	0.50399	82.204	81.877	82.381	0.74293	-0.13655	-0.00018248	NaN	121.53	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3881600			3262	7107	2114	2139							0.11612101625462401
ALTSTLISV	9	Unmodified	_ALTSTLISV_					0	0	0		ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB;ENST00000470994.1_1_7:23309673-23313234:+|nuORF	ENSG00000136235|ENST00000258733|GPNMB	ENSG00000136235|ENST00000258733|GPNMB	MULTI-MSMS	A375_MHC_IP_R1	1	453.17095947265625	2	452.771126	903.527698	-0.15511	-7.0228E-05	-0.082206	-3.7221E-05	-0.23731	-0.00010745	452.77110828249255	100.91	0.65753	100.91	100.48	101.14	0					22	12	2	0	0	0	0.0094266	1	37059	37059		97.075	35.717	1	4772000			3263	4767	2115	2140	3185	3185					0.07207535837437717
ALTSTLISV	9	Unmodified	_ALTSTLISV_					0	0	0		ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB;ENST00000470994.1_1_7:23309673-23313234:+|nuORF	ENSG00000136235|ENST00000258733|GPNMB	ENSG00000136235|ENST00000258733|GPNMB	MULTI-MSMS	A375_MHC_IP_R2	2	453.1711120605469	2	452.771126	903.527698	-0.013281	-6.0131E-06	-0.015196	-6.8804E-06	-0.028477	-1.2893E-05	452.77108306513713	99.94	0.60866	100.7	100.42	101.03	0.76278					25	11	3	0	0	0	0.0094266	1	37888	37888		97.075	22.652	1	6233100			3264	4767	2115	2140	3186	3186					0.07207535837437717
ALTTGGGPGRL	11	Unmodified	_ALTTGGGPGRL_					0	0	0			REV__ENST00000288912.8_1_12:122356509-122356590:+|nuORF	REV__ENST00000288912.8_1_12:122356509-122356590:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	500.6822204589844	2	500.282723	998.550893	-0.95353	-0.00047703	1.6415	0.0008212	0.68794	0.00034416	500.2826524449361	123.31	1.8151	123.31	122.83	124.65	0					77	35	3	0	0	0	0.60747	1	45958	45958		22.736	2.2827	1	34907000	+		3265	23348	2116	2141	3187	3187					0.051559746747557256
ALTTPQAEV	9	Unmodified	_ALTTPQAEV_					0	0	0			REV__ENSG00000103326|ENST00000219611|CAPN15	REV__ENSG00000103326|ENST00000219611|CAPN15	MSMS	A375_MHC_IP_R2	2	465.1583557128906	2	465.250557	928.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.707	1	41.482	40.982	41.982	0.77451								0	0	0	0.083165	1	15082	15082		46.021	3.9264	1		+		3266	17271	2117	2142	3188	3188					0.01945774797957256
ALTVAHELL	9	Unmodified	_ALTVAHELL_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-SECPEP	A375_MHC_IP_R2	2	483.1344299316406	2	483.784567	965.554582	-0.58678	-0.00028388	-0.46165	-0.00022334	-1.0484	-0.00050722	483.7842984854624	75.685	0.50999	76.425	76.232	76.742	0.74052					13	9	2	0	0	0	0.71541	1	28847	28847		7.2892	0	1	838610			3267	3341	2118	2143	3189	3189					0.07042644448608826
ALVASSVGTL	10	Unmodified	_ALVASSVGTL_					0	0	0			REV__nc|ENSG00000139292|O75473-3|LGR5	REV__nc|ENSG00000139292|O75473-3|LGR5	MULTI-MSMS	A375_MHC_IP_R1	1	459.6686096191406	2	459.26875	916.522947	-0.2949	-0.00013544	0.21481	9.8658E-05	-0.080082	-3.6779E-05	459.26877740577186	40.201	0.35624	40.201	39.999	40.355	0					14	6	3	0	0	0	0.43117	1	13796	13796		32.305	0	1	3790000	+		3268	19147	2119	2144	3190	3190					0.06134651694674176
ALVASSVGTL	10	Unmodified	_ALVASSVGTL_					0	0	0			REV__nc|ENSG00000139292|O75473-3|LGR5	REV__nc|ENSG00000139292|O75473-3|LGR5	MULTI-MSMS	A375_MHC_IP_R2	2	459.6682434082031	2	459.26875	916.522947	-0.44593	-0.0002048	0.29866	0.00013716	-0.14727	-6.7639E-05	459.2688532718	39.419	0.40576	40.194	39.965	40.371	0.77451					12	7	2	0	0	0	0.45919	1	14550	14550		30.637	1.555	1	6901000	+		3269	19147	2119	2144	3191	3191					0.06134651694674176
ALVCMPLWYLL	11	Unmodified	_ALVCMPLWYLL_					0	0	0			REV__ENSG00000147606|ENST00000276609|SLC26A7	REV__ENSG00000147606|ENST00000276609|SLC26A7	MULTI-MSMS	A375_MHC_IP_R1	1	441.6401672363281	3	441.239751	1320.69742	-0.13188	-5.819E-05	0.89096	0.00039313	0.75909	0.00033494	441.2399187035733	50.474	0.55974	50.474	50.204	50.764	0					14	10	2	0	0	0	0.73367	1	17884	17884		5.4027	0.99656	1	4729900	+		3270	19599	2120	2145	3192	3192					0.04990192523996484
ALVDIVRSL	9	Unmodified	_ALVDIVRSL_					0	0	0		ENST00000533676.5_1_11:61641288-61643947:-|nuORF;ENSG00000221968|ENST00000278829|FADS3	ENST00000533676.5_1_11:61641288-61643947:-|nuORF	ENST00000533676.5_1_11:61641288-61643947:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	493.7054748535156	2	493.305667	984.596781	-0.095313	-4.7018E-05	-0.11526	-5.6858E-05	-0.21057	-0.00010388	493.3055546893559	112.02	0.50901	112.02	111.67	112.18	0					16	9	2	0	0	0	0.058501	1	41034	41034		69.338	31.163	1	4863500			3271	9676	2121	2146	3193	3193					0.10386619857001733
ALVDIVRSL	9	Unmodified	_ALVDIVRSL_					0	0	0		ENST00000533676.5_1_11:61641288-61643947:-|nuORF;ENSG00000221968|ENST00000278829|FADS3	ENST00000533676.5_1_11:61641288-61643947:-|nuORF	ENST00000533676.5_1_11:61641288-61643947:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	493.7056884765625	2	493.305667	984.596781	-0.32897	-0.00016228	-0.19868	-9.801E-05	-0.52765	-0.0002603	493.305546554405	111.01	0.61349	111.74	111.5	112.11	0.73692					18	11	2	0	0	0	0.13199	1	41842	41842		46.022	46.022	1	3955100			3272	9676	2121	2146	3194	3194					0.10386619857001733
ALVDQRELYL	10	Unmodified	_ALVDQRELYL_					0	0	0		ENST00000561840.1_2_16:88923580-88926055:+|nuORF;ENST00000565309.1_1_16:88925068-88926212:+|nuORF;ENST00000564547.1_1_16:88923507-88925305:+|nuORF;ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L	ENST00000561840.1_2_16:88923580-88926055:+|nuORF	ENST00000561840.1_2_16:88923580-88926055:+|nuORF	MSMS	A375_MHC_IP_R2	2	610.5845947265625	2	610.337695	1218.66084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.2	1	84.939	84.439	85.439	0.73962								0	0	0	0.13839	1	32004	32004		30.703	8.0454	1				3273	7187	2122	2147	3195	3195					0.06025355223300721
ALVEGQVKL	9	Unmodified	_ALVEGQVKL_					0	0	0		DOK7|p.R14Q|1|0.52|ENSG00000175920|chr4:3463416-3463416|G/A|missense_variant;nc|ENSG00000175920|Q18PE1-4|DOK7;ENSG00000175920|ENST00000340083|DOK7;nc|ENSG00000175920|Q18PE1-3|DOK7	DOK7|p.R14Q|1|0.52|ENSG00000175920|chr4:3463416-3463416|G/A|missense_variant	DOK7|p.R14Q|1|0.52|ENSG00000175920|chr4:3463416-3463416|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	478.6539001464844	2	478.792392	955.570232	-0.36313	-0.00017386	0.47427	0.00022708	0.11114	5.3212E-05	478.79244581584146	56.748	0.45927	56.748	56.548	57.007	0					13	8	2	0	0	0	0.53748	1	20356	20356		18.146	0	1	1130600			3274	787	2123	2148	3196	3196					0.09066930965661868
ALVESLITV	9	Unmodified	_ALVESLITV_					0	0	0		ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	MSMS	A375_MHC_IP_R1	1	473.1863708496094	2	472.786776	943.558998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.05	1	123.05	122.55	123.55	0								0	0	0	0.00015982	1	45919	45919		109.63	9.2578	1				3275	9017	2124	2149	3197	3197					0.0849610887153176
ALVESLITV	9	Unmodified	_ALVESLITV_					0	0	0		ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	MULTI-MSMS	A375_MHC_IP_R2	2	473.1862487792969	2	472.786776	943.558998	-0.58449	-0.00027634	-0.06937	-3.2797E-05	-0.65386	-0.00030913	472.786750809139	121.96	0.5062	122.41	122.13	122.64	0.44488					16	9	2	0	0	0	0.0070665	1	46701	46701		131.3	26.499	1	26317000			3276	9017	2124	2149	3198	3198					0.0849610887153176
ALVGASLMIL	10	Unmodified	_ALVGASLMIL_					0	0	0		tr|U7STI9|U7STI9_FUSNUNickel/cobalteffluxsystemOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01502PE=3SV=1	tr|U7STI9|U7STI9_FUSNUNickel/cobalteffluxsystemOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01502PE=3SV=1	tr|U7STI9|U7STI9_FUSNUNickel/cobalteffluxsystemOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01502PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	494.1710205078125	2	494.298996	986.583439	-0.32544	-0.00016087	0.25973	0.00012838	-0.065713	-3.2482E-05	494.29904246675295	103.47	0.50954	103.47	103.12	103.63	0					13	9	2	0	0	0	0.73628	1	38044	38044		28.487	10.352	1	639740			3277	29696	2125	2150	3199	3199					0.08961045753392227
ALVMFVVKAVW	11	Unmodified	_ALVMFVVKAVW_					0	0	0			REV__nc|ENSG00000188833|Q5MY95-2|ENTPD8	REV__nc|ENSG00000188833|Q5MY95-2|ENTPD8	MULTI-MSMS	A375_MHC_IP_R1	1	631.7615966796875	2	631.87012	1261.72569	-0.83331	-0.00052654	-1.7633	-0.0011142	-2.5967	-0.0016408	631.8688155728711	129.52	0.45686	129.52	129.3	129.75	0					11	8	2	0	0	0	0.72877	1	49859	49859		10.074	4.777	1	3993000	+		3278	22119	2126	2151	3200	3200					0.10529258495580507
ALVNLATTSI	10	Unmodified	_ALVNLATTSI_					0	0	0		ENSG00000169189|ENST00000361439|NSMCE1;ENST00000569236.5_1_16:27236480-27252833:-|nuORF;ENST00000565070.5_1_16:27237776-27268891:-|nuORF	ENSG00000169189|ENST00000361439|NSMCE1	ENSG00000169189|ENST00000361439|NSMCE1	MULTI-SECPEP	A375_MHC_IP_R1	1	502.1948547363281	2	501.795132	1001.57571	-0.21684	-0.00010881	-0.19117	-9.5926E-05	-0.40801	-0.00020474	501.7949938256742	45.763	0.60991	45.763	45.484	46.094	0					25	11	3	0	0	0	0.24752	1	16030	16030		62.573	16.552	1	12032000			3279	7388	2127	2152	3201	3201					0.07498609757476515
ALVNLATTSI	10	Unmodified	_ALVNLATTSI_					0	0	0		ENSG00000169189|ENST00000361439|NSMCE1;ENST00000569236.5_1_16:27236480-27252833:-|nuORF;ENST00000565070.5_1_16:27237776-27268891:-|nuORF	ENSG00000169189|ENST00000361439|NSMCE1	ENSG00000169189|ENST00000361439|NSMCE1	MULTI-SECPEP	A375_MHC_IP_R2	2	502.1947021484375	2	501.795132	1001.57571	-0.73939	-0.00037102	0.042042	2.1097E-05	-0.69735	-0.00034993	501.79513694070414	44.903	0.56122	45.672	45.39	45.951	0.7691					30	10	4	0	0	0	0.60238	1	16743	16743		39.95	9.3132	1	14476000			3280	7388	2127	2152	3202	3202					0.07498609757476515
ALVNRKITV	9	Unmodified	_ALVNRKITV_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-SECPEP	A375_MHC_IP_R1	1	507.9801330566406	2	507.326934	1012.63931	-0.43823	-0.00022233	0.56536	0.00028682	0.12713	6.4494E-05	507.3272634080298	37.736	0.35709	37.736	37.607	37.964	0					10	6	2	0	0	0	0.58271	1	12724	12724		20.454	0	1	2106200			3281	5785	2128	2153	3203	3203					0.13350014985235248
ALVNYPDLGK	10	Unmodified	_ALVNYPDLGK_					0	0	0			REV__ENSG00000135940|ENST00000258424|COX5B	REV__ENSG00000135940|ENST00000258424|COX5B	MULTI-SECPEP	A375_MHC_IP_R1	1	363.2815856933594	3	363.86948	1088.58661	0.090389	3.289E-05	-0.47937	-0.00017443	-0.38898	-0.00014154	363.8692803591847	27.258	0.35399	27.258	27.078	27.432	0					15	6	3	0	0	0	0.88918	1	8286	8286		5.0475	0	1	4067400	+		3282	18900	2129	2154	3204	3204					0.0458601213174461
ALVPKEIPG	9	Unmodified	_ALVPKEIPG_					0	0	0		ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	462.1535339355469	2	462.28166	922.548768	-0.11315	-5.2309E-05	-0.0053773	-2.4858E-06	-0.11853	-5.4795E-05	462.2816136504468	56.473	0.50697	56.473	56.194	56.701	0					15	9	2	0	0	0	0.55359	1	20228	20228		15.847	0	1	1792200			3283	7007	2130	2155	3205	3205					0.08439545936948889
ALVQDLAKA	9	Unmodified	_ALVQDLAKA_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	MULTI-SECPEP	A375_MHC_IP_R1	1	465.17681884765625	2	464.776742	927.538931	-0.085721	-3.9841E-05	-0.0082307	-3.8254E-06	-0.093952	-4.3667E-05	464.7767176624945	51.927	0.51078	51.927	51.625	52.136	0					20	9	3	0	0	0	0.087712	1	18407	18407		66.457	12.881	1	5508400			3284	4546	2131	2156	3206	3206					0.07226357931551775
ALVQDLAKA	9	Unmodified	_ALVQDLAKA_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	MULTI-SECPEP	A375_MHC_IP_R2	2	465.1765441894531	2	464.776742	927.538931	-0.72165	-0.00033541	0.070126	3.2593E-05	-0.65153	-0.00030281	464.7767077563792	51.035	0.55683	51.789	51.462	52.019	0.75406					24	10	3	0	0	0	0.022401	1	19172	19172		89.401	31.929	1	7073400			3285	4546	2131	2156	3207	3207					0.07226357931551775
ALVQFRAYL	9	Unmodified	_ALVQFRAYL_					0	0	0			REV__nc|ENSG00000177595|Q9HB75-7|PIDD1	REV__nc|ENSG00000177595|Q9HB75-7|PIDD1	MULTI-SECPEP	A375_MHC_IP_R1	1	361.5988464355469	3	360.878198	1079.61277	0.32315	0.00011662	-0.39333	-0.00014194	-0.070183	-2.5327E-05	360.8779607198018	39.213	0.45832	39.213	38.983	39.441	0					13	8	2	0	0	0	0.67483	1	13373	13373		14.405	0	1	2660000	+		3286	27376	2132	2157	3208	3208					0.07614326093880663
ALVRTLNVAL	10	Unmodified	_ALVRTLNVAL_					0	0	0			REV__ENSG00000143303|ENST00000368216|METTL25B	REV__ENSG00000143303|ENST00000368216|METTL25B	MULTI-MSMS	A375_MHC_IP_R1	1	357.6289367675781	3	357.229119	1068.66553	-0.20982	-7.4955E-05	0.27236	9.7296E-05	0.062541	2.2341E-05	357.22906128421096	41.7	0.46127	41.7	41.521	41.982	0					17	8	3	0	0	0	0.70312	1	14446	14446		10.899	0.58372	1	2989600	+		3287	19344	2133	2158	3209	3209					0.13394284156697722
ALVSAVATLP	10	Unmodified	_ALVSAVATLP_					0	0	0		ENSG00000247626|ENST00000282276|MARS2	ENSG00000247626|ENST00000282276|MARS2	ENSG00000247626|ENST00000282276|MARS2	MULTI-SECPEP	A375_MHC_IP_R1	1	471.6687316894531	2	471.286943	940.559333	-0.39606	-0.00018666	0.56328	0.00026547	0.16722	7.8807E-05	471.2870471682446	60.192	0.50908	60.192	59.905	60.414	0					18	9	3	0	0	0	0.78945	1	21597	21597		13.906	6.6168	1	1271200			3288	9830	2134	2159	3210	3210					0.0866752859137705
ALVSAVATLP	10	Unmodified	_ALVSAVATLP_					0	0	0		ENSG00000247626|ENST00000282276|MARS2	ENSG00000247626|ENST00000282276|MARS2	ENSG00000247626|ENST00000282276|MARS2	MULTI-MATCH	A375_MHC_IP_R2	2		2	471.286943	940.559333	-0.99454	-0.00046872	-1.1199	-0.00052778	-2.1144	-0.00099649	471.28687490805066	59.274	0.50567	60.021	59.793	60.299	0.74714	-0.085549	-0.0013577	NaN	13.906	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1016300			3289	9830	2134	2159							0.0866752859137705
ALVSGLHGV	9	Unmodified	_ALVSGLHGV_					0	0	0		ENST00000572179.5_1_17:3623679-3627129:-|nuORF;ENST00000570360.1_1_17:3626633-3627135:-|nuORF	ENST00000572179.5_1_17:3623679-3627129:-|nuORF	ENST00000572179.5_1_17:3623679-3627129:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	427.15057373046875	2	426.750527	851.486502	-0.29244	-0.0001248	0.1412	6.0259E-05	-0.15123	-6.4539E-05	426.75054918266187	53.089	0.60705	53.089	52.796	53.403	0					23	11	3	0	0	0	0.054184	1	18891	18891		50.855	6.448	1	12869000			3290	13604	2135	2160	3211	3211					0.05481819588624148
ALVSGLHGV	9	Unmodified	_ALVSGLHGV_					0	0	0		ENST00000572179.5_1_17:3623679-3627129:-|nuORF;ENST00000570360.1_1_17:3626633-3627135:-|nuORF	ENST00000572179.5_1_17:3623679-3627129:-|nuORF	ENST00000572179.5_1_17:3623679-3627129:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	427.1502380371094	2	426.750527	851.486502	-0.55423	-0.00023652	0.011722	5.0024E-06	-0.54251	-0.00023151	426.75049980016433	52.155	0.65917	52.907	52.626	53.285	0.75225					27	12	3	0	0	0	0.030661	1	19639	19639		74.396	19.623	1	14074000			3291	13604	2135	2160	3212	3212					0.05481819588624148
ALVSLRAGV	9	Unmodified	_ALVSLRAGV_					0	0	0			REV__nc|ENSG00000114054|P05166-2|PCCB	REV__nc|ENSG00000114054|P05166-2|PCCB	MULTI-SECPEP	A375_MHC_IP_R1	1	443.6794128417969	2	443.279452	884.544351	-0.071788	-3.1822E-05	0.10618	4.7069E-05	0.034395	1.5247E-05	443.27946602009763	57.606	0.50871	57.606	57.364	57.873	0					24	9	4	0	0	0	0.27742	1	20661	20661		51.63	17.228	1	6102300	+		3292	27182	2136	2161	3213	3213					0.09746081514037996
ALVSPAAVAAA	11	Unmodified	_ALVSPAAVAAA_					0	0	0			REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	MULTI-MSMS	A375_MHC_IP_R2	2	471.1763610839844	2	470.776742	939.538931	-0.52679	-0.000248	0.06295	2.9635E-05	-0.46384	-0.00021837	470.77669717466586	88.421	0.91255	89.153	88.671	89.584	0.7318					36	17	3	0	0	0	0.11059	1	33618	33618		68.081	6.7232	1	6735700	+		3293	19174	2137	2162	3214	3214					0.06674357931558461
ALVSSFGVFT	10	Unmodified	_ALVSSFGVFT_					0	0	0		ATP13A5|p.K907T|1|0.41|ENSG00000187527|chr3:193301266-193301266|T/G|missense_variant	ATP13A5|p.K907T|1|0.41|ENSG00000187527|chr3:193301266-193301266|T/G|missense_variant	ATP13A5|p.K907T|1|0.41|ENSG00000187527|chr3:193301266-193301266|T/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	513.7028198242188	2	514.276575	1026.5386	-0.87162	-0.00044826	0.90968	0.00046782	0.038052	1.9569E-05	514.276895224087	55.764	0.25384	56.514	56.337	56.591	0.75015					6	4	2	0	0	0	0.76414	1	21002	21002		14.838	0	1	714560			3294	205	2138	2163	3215	3215					0.02638938211725872
ALVSSLHLL	9	Unmodified	_ALVSSLHLL_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-SECPEP	A375_MHC_IP_R1	1	477.1944885253906	2	476.794935	951.575317	-0.41747	-0.00019905	0.34552	0.00016474	-0.071949	-3.4305E-05	476.79505868892414	97.254	0.50478	97.254	96.985	97.49	0					23	9	3	0	0	0	0.28475	1	35716	35716		32.305	20.665	1	3614400			3295	8361	2139	2164	3216	3216					0.09759234828288754
ALVSSLHLL	9	Unmodified	_ALVSSLHLL_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	A375_MHC_IP_R2	2	476.6156921386719	2	476.794935	951.575317	-0.53067	-0.00025302	0.35331	0.00016845	-0.17737	-8.4569E-05	476.7950734163515	96.221	0.55853	96.971	96.653	97.211	0.75045					25	10	3	0	0	0	0.051888	1	36498	36498		63.563	25.412	1	3801900			3296	8361	2139	2164	3217	3217					0.09759234828288754
ALVVQVAEA	9	Unmodified	_ALVVQVAEA_					0	0	0		ENSG00000049860|ENST00000261416|HEXB;ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF	ENSG00000049860|ENST00000261416|HEXB	ENSG00000049860|ENST00000261416|HEXB	MULTI-MSMS	A375_MHC_IP_R1	1	450.6633605957031	2	450.263468	898.512382	-0.11507	-5.1813E-05	-0.31672	-0.00014261	-0.43179	-0.00019442	450.2632644931662	73.114	1.6726	73.114	72.676	74.349	0					81	32	4	0	0	0	0.009271	2	26535	26535;26751		103.75	6.6736	1	68922000			3297	1224	2140	2165	3218;3219	3218					0.05906669040234647
ALVVQVAEA	9	Unmodified	_ALVVQVAEA_					0	0	0		ENSG00000049860|ENST00000261416|HEXB;ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF	ENSG00000049860|ENST00000261416|HEXB	ENSG00000049860|ENST00000261416|HEXB	MULTI-MSMS	A375_MHC_IP_R2	2	450.66278076171875	2	450.263468	898.512382	-0.47228	-0.00021265	-0.091755	-4.1314E-05	-0.56403	-0.00025396	450.2633851931904	72.262	1.6244	72.996	72.567	74.191	0.73421					86	31	4	0	0	0	0.0097266	3	27333	27333;27562;27658		111.29	14.212	1	89272000			3298	1224	2140	2165	3220;3221;3222	3220					0.05906669040234647
ALVVTERKY	9	Unmodified	_ALVVTERKY_					0	0	0		ENSG00000180875|ENST00000318160|GREM2	ENSG00000180875|ENST00000318160|GREM2	ENSG00000180875|ENST00000318160|GREM2	MULTI-SECPEP	A375_MHC_IP_R1	1	360.61322021484375	3	360.213358	1077.61824	0.049022	1.7658E-05	-0.42523	-0.00015317	-0.3762	-0.00013551	360.213227207778	40.125	0.4586	40.125	39.948	40.406	0					12	8	2	0	0	0	0.78753	1	13826	13826		4.897	0	1	3321600			3299	8321	2141	2166	3223	3223					0.08254004885725408
ALVYEQNN	8	Unmodified	_ALVYEQNN_					0	0	0			REV__ENSG00000115306|ENST00000356805|SPTBN1;REV__nc|ENSG00000115306|Q01082-2|SPTBN1	REV__ENSG00000115306|ENST00000356805|SPTBN1	MSMS	A375_MHC_IP_R2	2	475.64556884765625	2	475.732532	949.45051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.775	1	65.513	65.013	66.013	0.73811								0	0	0	0.16876	1	24558	24558		20.871	3.9289	1		+		3300	17871;27186	2142	2167	3224	3224					-0.02623682378907688
ALWAMYHV	8	Unmodified	_ALWAMYHV_					0	0	0		nc|ENSG00000203995|Q6WRX3-2|ZYG11A;ENSG00000203995|ENST00000371528|ZYG11A	nc|ENSG00000203995|Q6WRX3-2|ZYG11A	nc|ENSG00000203995|Q6WRX3-2|ZYG11A	MULTI-SECPEP	A375_MHC_IP_R1	1	495.97674560546875	2	495.746931	989.479308	-0.20345	-0.00010086	-0.38712	-0.00019191	-0.59056	-0.00029277	495.7472325772812	44.206	0.56509	44.206	44.01	44.575	0					14	10	2	0	0	0	0.90851	1	15414	15414		24.21	13.095	1	1261900			3301	9404	2143	2168	3225	3225					-0.015852362834721134
ALWDKLFNL	9	Unmodified	_ALWDKLFNL_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	A375_MHC_IP_R1	1	560.7142333984375	2	560.313492	1118.61243	-0.69394	-0.00038883	1.2213	0.0006843	0.52734	0.00029548	560.3140699999445	129.83	0.2522	129.83	129.7	129.95	0					12	4	4	0	0	0	0.0091377	1	49954	49954		121.53	73.188	1	13184000			3302	1262	2144	2169	3226	3226					0.057869063740326965
ALWDKLFNL	9	Unmodified	_ALWDKLFNL_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	A375_MHC_IP_R2	2	560.7130737304688	2	560.313492	1118.61243	-0.68303	-0.00038271	-0.34705	-0.00019446	-1.0301	-0.00057717	560.31324614199	129.6	0.30261	129.84	129.72	130.02	0.23946					8	5	2	0	0	0	0.053667	1	50953	50953		76.825	76.825	1	14880000			3303	1262	2144	2169	3227	3227					0.057869063740326965
ALWDPGPEAA	10	Unmodified	_ALWDPGPEAA_					0	0	0		MZF1|p.R44C|1|0.44|ENSG00000099326|chr19:58571260-58571260|G/A|missense_variant;ENST00000600048.1_1_19:59082132-59084077:-|nuORF;nc|ENSG00000099326|P28698-3|MZF1;ENSG00000099326|ENST00000215057|MZF1	MZF1|p.R44C|1|0.44|ENSG00000099326|chr19:58571260-58571260|G/A|missense_variant	MZF1|p.R44C|1|0.44|ENSG00000099326|chr19:58571260-58571260|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	1026.8614501953125	1	1026.48909	1025.48181	0.1858	0.00019072	1.1785	0.0012097	1.3643	0.0014004	1026.4886103310268	85.249	0.40786	85.985	85.78	86.188	0.73602					18	7	3	0	0	0	0.33265	1	32476	32476		38.176	15.439	1	2021300			3304	2071	2145	2170	3228	3228					-0.02991109344816323
ALWDPGPEAA	10	Unmodified	_ALWDPGPEAA_					0	0	0		MZF1|p.R44C|1|0.44|ENSG00000099326|chr19:58571260-58571260|G/A|missense_variant;ENST00000600048.1_1_19:59082132-59084077:-|nuORF;nc|ENSG00000099326|P28698-3|MZF1;ENSG00000099326|ENST00000215057|MZF1	MZF1|p.R44C|1|0.44|ENSG00000099326|chr19:58571260-58571260|G/A|missense_variant	MZF1|p.R44C|1|0.44|ENSG00000099326|chr19:58571260-58571260|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		1	1026.48909	1025.48181	-0.032801	-3.367E-05	-0.22111	-0.00022697	-0.25391	-0.00026064	1026.4886649880098	85.946	0.45516	85.946	85.717	86.172	0	-0.019843	-0.0001932	NaN	38.176	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2624900			3305	2071	2145	2170							-0.02991109344816323
ALWEDEGVRA	10	Unmodified	_ALWEDEGVRA_					0	0	0		nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000494081.5_1_20:57478601-57480533:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF	nc|ENSG00000087460|P63092-3|GNAS	nc|ENSG00000087460|P63092-3|GNAS	MULTI-MSMS	A375_MHC_IP_R1	1	573.68310546875	2	573.28292	1144.55129	-0.28673	-0.00016438	-0.21542	-0.0001235	-0.50216	-0.00028788	573.2829215762948	59.006	0.96663	59.006	58.43	59.397	0					44	18	4	0	0	0	0.046805	1	21160	21160		76.825	49.196	1	18875000			3306	1873	2146	2171	3229	3229					-0.015206503960371265
ALWEGPSKA	9	Unmodified	_ALWEGPSKA_					0	0	0		nc|ENSG00000006607|O94887-3|FARP2;nc|ENSG00000006607|O94887-2|FARP2;ENSG00000006607|ENST00000264042|FARP2	nc|ENSG00000006607|O94887-3|FARP2	nc|ENSG00000006607|O94887-3|FARP2	MULTI-MSMS	A375_MHC_IP_R2	2	480.1529541015625	2	479.753267	957.491981	-0.37537	-0.00018008	0.59143	0.00028374	0.21606	0.00010365	479.75354505328454	43.723	0.95972	44.492	43.873	44.833	0.7691					37	18	3	0	0	0	0.06083	1	16277	16277		60.074	22.1	1	3181000			3307	920	2147	2172	3230	3230					0.01153498380426754
ALWEKNTHL	9	Unmodified	_ALWEKNTHL_					0	0	0		ENSG00000126001|ENST00000397527|CEP250;nc|ENSG00000126001|Q9BV73-2|CEP250	ENSG00000126001|ENST00000397527|CEP250	ENSG00000126001|ENST00000397527|CEP250	MULTI-SECPEP	A375_MHC_IP_R1	1	371.6013488769531	3	371.201341	1110.58219	-0.047827	-1.7753E-05	-0.10221	-3.7939E-05	-0.15003	-5.5693E-05	371.20126681467275	41.475	0.71582	41.475	41.164	41.88	0					26	13	3	0	0	0	0.74875	1	14336	14336		14.957	6.5129	1	4070900			3308	4019	2148	2173	3231	3231					0.03132547708855782
ALWEKNTHL	9	Unmodified	_ALWEKNTHL_					0	0	0		ENSG00000126001|ENST00000397527|CEP250;nc|ENSG00000126001|Q9BV73-2|CEP250	ENSG00000126001|ENST00000397527|CEP250	ENSG00000126001|ENST00000397527|CEP250	MULTI-SECPEP	A375_MHC_IP_R2	2	371.6013488769531	3	371.201341	1110.58219	0.27825	0.00010329	-0.50109	-0.00018601	-0.22284	-8.272E-05	371.20133529769333	40.559	0.86407	41.333	40.93	41.794	0.77451					23	16	3	0	0	0	0.67539	1	15039	15039		26.021	9.4548	1	3627400			3309	4019	2148	2173	3232	3232					0.03132547708855782
ALWEKNTHL	9	Unmodified	_ALWEKNTHL_					0	0	0		ENSG00000126001|ENST00000397527|CEP250;nc|ENSG00000126001|Q9BV73-2|CEP250	ENSG00000126001|ENST00000397527|CEP250	ENSG00000126001|ENST00000397527|CEP250	MULTI-SECPEP	A375_MHC_IP_R2	2	556.6983032226562	2	556.298373	1110.58219	-0.9034	-0.00050256	0.36221	0.0002015	-0.5412	-0.00030107	556.2986800055986	40.612	0.50779	41.386	41.082	41.59	0.77451					19	9	3	0	0	0	0.37663	1	15067	15067		43.772	7.6454	1	3292600			3310	4019	2148	2173	3233	3233					0.03132547708855782
ALWERIEGV	9	Unmodified	_ALWERIEGV_					0	0	0		ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1929321289062	2	536.792924	1071.57129	-0.90351	-0.000485	0.98696	0.00052979	0.083444	4.4792E-05	536.7934362111754	84.52	0.91924	84.52	84.341	85.261	0					24	17	2	0	0	0	0.14273	1	30943	30943		83.429	29.596	1	9645800			3311	2109	2149	2174	3234	3234					0.03837145334568959
ALWERIEGV	9	Unmodified	_ALWERIEGV_					0	0	0		ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	MULTI-SECPEP	A375_MHC_IP_R2	2	537.2099609375	2	536.792924	1071.57129	-0.82012	-0.00044024	0.63126	0.00033885	-0.18886	-0.00010138	536.7933472539208	83.726	0.87014	84.466	84.254	85.124	0.73962					21	16	2	0	0	0	0.30942	1	31787	31787		65.474	65.474	1	8947400			3312	2109	2149	2174	3235	3235					0.03837145334568959
ALWGEFALV	9	Unmodified	_ALWGEFALV_					0	0	0			REV__ENST00000521348.5_1_8:42251729-42259534:+|nuORF	REV__ENST00000521348.5_1_8:42251729-42259534:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	503.21038818359375	2	503.273835	1004.53312	-0.16511	-8.3094E-05	-1.9062	-0.00095933	-2.0713	-0.0010424	503.2733949152057	45.661	0.25378	45.661	45.484	45.738	0					7	4	2	0	0	0	0.5339	1	15993	15993		18.135	0	1	513960	+		3313	16713	2150	2175	3236	3236					0.03103259419913229
ALWGFFPVL	9	Unmodified	_ALWGFFPVL_					0	0	0		ENSG00000134153|ENST00000256545|EMC7	ENSG00000134153|ENST00000256545|EMC7	ENSG00000134153|ENST00000256545|EMC7	MULTI-SECPEP	A375_MHC_IP_R1	1	525.6942138671875	2	525.294571	1048.57459	-0.81638	-0.00042884	0.58172	0.00030558	-0.23466	-0.00012327	525.294734038481	139.24	0.40201	139.24	139.12	139.52	0					19	7	4	0	0	0	0.030079	1	53528	53528		93.763	63.538	1	15510000			3314	4553	2151	2176	3237	3237					0.05224440179222256
ALWGFFPVL	9	Unmodified	_ALWGFFPVL_					0	0	0		ENSG00000134153|ENST00000256545|EMC7	ENSG00000134153|ENST00000256545|EMC7	ENSG00000134153|ENST00000256545|EMC7	MULTI-MSMS	A375_MHC_IP_R2	2	1051.4490966796875	1	1049.58187	1048.57459	0.24655	0.00025878	-0.078509	-8.2402E-05	0.16804	0.00017637	1049.5816036198346	139.17	0.39941	139.23	139.05	139.45	0.059906					19	7	4	0	0	0	0.33325	1	54506	54506		28.173	13.592	1	57570000			3315	4553	2151	2176	3238	3238					0.05224440179222256
ALWGFFPVL	9	Unmodified	_ALWGFFPVL_					0	0	0		ENSG00000134153|ENST00000256545|EMC7	ENSG00000134153|ENST00000256545|EMC7	ENSG00000134153|ENST00000256545|EMC7	MULTI-SECPEP	A375_MHC_IP_R2	2	525.6943969726562	2	525.294571	1048.57459	-0.29902	-0.00015708	-0.38869	-0.00020418	-0.68771	-0.00036125	525.2942985525639	139.17	0.34958	139.23	139.05	139.4	0.059906					12	6	2	0	0	0	0.0515	1	54538	54538		79.935	27.666	1	18275000			3316	4553	2151	2176	3239	3239					0.05224440179222256
ALWKGVQSL	9	Unmodified	_ALWKGVQSL_					0	0	0		ENSG00000140678|ENST00000268296|ITGAX;ENST00000571644.1_1_16:31372467-31381400:+|nuORF	ENSG00000140678|ENST00000268296|ITGAX	ENSG00000140678|ENST00000268296|ITGAX	MULTI-SECPEP	A375_MHC_IP_R1	1	501.6922912597656	2	501.292559	1000.57057	-0.37786	-0.00018942	-0.38746	-0.00019423	-0.76532	-0.00038365	501.2922610341087	74.528	0.55773	74.528	74.247	74.805	0					29	10	4	0	0	0	0.016309	1	27115	27115		103.35	71.048	1	6886500			3317	5176	2152	2177	3240	3240					0.07030350685522535
ALWKGVQSL	9	Unmodified	_ALWKGVQSL_					0	0	0		ENSG00000140678|ENST00000268296|ITGAX;ENST00000571644.1_1_16:31372467-31381400:+|nuORF	ENSG00000140678|ENST00000268296|ITGAX	ENSG00000140678|ENST00000268296|ITGAX	MULTI-SECPEP	A375_MHC_IP_R2	2	501.6922607421875	2	501.292559	1000.57057	-0.55707	-0.00027926	-0.5054	-0.00025335	-1.0625	-0.00053261	501.29220395699065	73.618	0.7656	74.354	73.938	74.704	0.73541					25	12	3	0	0	0	0.05021	1	27918	27918		88.954	40.608	1	6940800			3318	5176	2152	2177	3241	3241					0.07030350685522535
ALWLVGFLVY	10	Unmodified	_ALWLVGFLVY_					0	0	0			REV__ENST00000569075.5_1_15:42525398-42565582:-|nuORF	REV__ENST00000569075.5_1_15:42525398-42565582:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	393.6137390136719	3	394.230349	1179.66922	-0.70188	-0.0002767	-0.10513	-4.1446E-05	-0.80702	-0.00031815	394.2302280351977	33.772	0.35427	34.525	34.348	34.702	0.75225					10	6	2	0	0	0	0.93005	1	12107	12107		10.8	10.8	1	1284200	+		3319	17294	2153	2178	3242	3242					0.0865695393056285
ALWNEEALL	9	Unmodified	_ALWNEEALL_					0	0	0		ENST00000424022.2_1_1:225594357-225599062:-|nuORF;ENSG00000143815|ENST00000272163|LBR	ENST00000424022.2_1_1:225594357-225599062:-|nuORF	ENST00000424022.2_1_1:225594357-225599062:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	530.1800537109375	2	529.779482	1057.54441	-0.54086	-0.00028654	0.040989	2.1715E-05	-0.49987	-0.00026482	530.2807204918308	125.83	0.35455	126.13	125.87	126.23	0.2951					9	6	2	0	0	0	0.026268	1	49172	49172		78.149	6.2271	1	7771200			3320	5437	2154	2179	3243	3243					0.017940367233904908
ALWNEEALL	9	Unmodified	_ALWNEEALL_					0	0	0		ENST00000424022.2_1_1:225594357-225599062:-|nuORF;ENSG00000143815|ENST00000272163|LBR	ENST00000424022.2_1_1:225594357-225599062:-|nuORF	ENST00000424022.2_1_1:225594357-225599062:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	529.779482	1057.54441	-0.31116	-0.00016484	1.1664	0.00061795	0.85527	0.0004531	529.7799888829528	126.28	0.30347	126.28	126.1	126.41	0	0.076505	0.00036687	NaN	78.149	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3543400			3321	5437	2154	2179							0.017940367233904908
ALWNQAADI	9	Unmodified	_ALWNQAADI_					0	0	0			REV__nc|ENSG00000035403|P18206-2|VCL	REV__nc|ENSG00000035403|P18206-2|VCL	MULTI-MSMS	A375_MHC_IP_R1	1	501.6555480957031	2	501.256174	1000.49779	-0.28449	-0.0001426	-0.821	-0.00041153	-1.1055	-0.00055413	501.2559029292235	79.308	0.51302	79.308	79.061	79.574	0					15	9	2	0	0	0	0.62719	1	28957	28957		13.508	13.508	1	1312200	+		3322	16315	2155	2180	3244	3244					-0.002434031079246779
ALWWLATY	8	Unmodified	_ALWWLATY_					0	0	0			REV__PCDHA11|p.S723L|1|0.57|ENSG00000249158|chr5:140871271-140871271|C/T|missense_variant	REV__PCDHA11|p.S723L|1|0.57|ENSG00000249158|chr5:140871271-140871271|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	512.1665649414062	2	512.268553	1022.52255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.064	1	27.064	26.564	27.564	0								0	0	0	0.16876	1	8151	8151		20.871	3.7583	1		+		3323	27731	2156	2181	3245	3245					0.012192767654710224
ALWWLATY	8	Unmodified	_ALWWLATY_					0	0	0			REV__PCDHA11|p.S723L|1|0.57|ENSG00000249158|chr5:140871271-140871271|C/T|missense_variant	REV__PCDHA11|p.S723L|1|0.57|ENSG00000249158|chr5:140871271-140871271|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1666259765625	2	512.268553	1022.52255	-1.139	-0.00058346	0.46391	0.00023765	-0.67507	-0.00034581	512.2686359412173	26.423	0.4559	27.083	26.907	27.363	0.65992					11	8	2	0	0	0	0.96296	1	8957	8957		15.768	2.2603	1	3454800	+		3324	27731	2156	2181	3246	3246					0.012192767654710224
ALYASRLYL	9	Unmodified	_ALYASRLYL_					0	0	0		ENSG00000144591|ENST00000313597|GMPPA;nc|ENSG00000144591|Q96IJ6-2|GMPPA	ENSG00000144591|ENST00000313597|GMPPA	ENSG00000144591|ENST00000313597|GMPPA	MULTI-MSMS	A375_MHC_IP_R1	1	535.7054443359375	2	535.305667	1068.59678	-0.85643	-0.00045845	0.23014	0.00012319	-0.62629	-0.00033525	535.3049025917566	80.731	0.55786	80.731	80.441	80.999	0					18	10	3	0	0	0	0.56584	1	29519	29519		17.113	2.5312	1	2343200			3325	5496	2157	2182	3247	3247					0.06522619856968959
ALYDICFRT	9	Unmodified	_ALYDICFRT_					0	0	0		ENSG00000101162|ENST00000217133|TUBB1;CON__ENSEMBL:ENSBTAP00000025008;ENST00000450755.1_1_X:122696050-122696458:+|nuORF;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3;chr16:89921431-89932571|440|11.67|0.7|4.06|+|ENST00000555810|TUBB3,TUBB3;ENST00000404155.1_1_6:3177457-3179994:-|nuORF;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6	ENSG00000101162|ENST00000217133|TUBB1;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;nc|ENSG00000258947|Q13509-2|TUBB3;ENST00000404155.1_1_6:3177457-3179994:-|nuORF;ENST00000417736.2_1_18:12308439-12326126:+|nuORF	nc|ENSG00000258947|Q13509-2|TUBB3	MULTI-MSMS	A375_MHC_IP_R1	1	551.712158203125	2	551.273509	1100.53247	-0.64508	-0.00035561	-0.39819	-0.00021951	-1.0433	-0.00057512	551.2736021493641	95.316	0.70895	95.316	95.007	95.716	0					18	13	2	0	0	0	0.29123	1	34970	34970		31.268	5.869	1	1048600		+	3326	9924;4872;9016;7993;2260;11580	2158	2183	3248	3248					-0.013779032914726486
ALYDNVEKL	9	Unmodified	_ALYDNVEKL_					0	0	0		nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;nc|ENSG00000070669|P08243-3|ASNS	nc|ENSG00000070669|P08243-2|ASNS	nc|ENSG00000070669|P08243-2|ASNS	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1842041015625	2	532.784764	1063.55498	-0.61118	-0.00032563	-0.23284	-0.00012406	-0.84403	-0.00044969	532.7846532751668	63.702	0.56179	63.702	63.377	63.939	0					23	10	3	0	0	0	0.16595	1	23018	23018		61.602	41.187	1	7930500			3327	1496	2159	2184	3249	3249					0.025740193777892273
ALYDNVEKL	9	Unmodified	_ALYDNVEKL_					0	0	0		nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;nc|ENSG00000070669|P08243-3|ASNS	nc|ENSG00000070669|P08243-2|ASNS	nc|ENSG00000070669|P08243-2|ASNS	MULTI-SECPEP	A375_MHC_IP_R2	2	533.1845092773438	2	532.784764	1063.55498	-0.68047	-0.00036255	1.0997	0.00058589	0.41921	0.00022335	532.784826620996	62.971	0.60502	63.713	63.333	63.938	0.74263					25	10	3	0	0	0	0.074405	1	23857	23857		70.332	25.925	1	7545300			3328	1496	2159	2184	3250	3250					0.025740193777892273
ALYDSVILL	9	Unmodified	_ALYDSVILL_					0	0	0		ENST00000438257.8_2_14:80669457-80677836:-|nuORF;ENSG00000211448|ENST00000438257|DIO2;nc|ENSG00000211448|Q92813-2|DIO2	ENST00000438257.8_2_14:80669457-80677836:-|nuORF	ENST00000438257.8_2_14:80669457-80677836:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1006.909423828125	1	1006.58192	1005.57465	0.016692	1.6802E-05	0.98816	0.00099466	1.0049	0.0010115	1006.5833311389324	130.77	0.30569	130.98	130.91	131.21	0.2142					7	5	2	0	0	0	0.089948	1	51444	51444		60.39	20.432	1	6558700			3329	9548	2160	2185	3251	3251					0.07208395388579447
ALYEESTV	8	Unmodified	_ALYEESTV_					0	0	0			REV__ENSG00000123594|ENST00000380622|ATXN3L	REV__ENSG00000123594|ENST00000380622|ATXN3L	MSMS	A375_MHC_IP_R2	2	456.1836853027344	2	456.221465	910.428378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.39	1	109.15	108.65	109.65	0.75436								0	0	0	0.16876	1	40930	40930		15.768	1.1865	1		+		3330	18251	2161	2186	3252	3252					-0.030419068473179323
ALYGKTEVV	9	Unmodified	_ALYGKTEVV_					0	0	0		CASKIN2|p.P971Afs*141|1|0.82|ENSG00000177303|chr17:75502139-75502163|CGGGGGGCACGGGTGTCTCTCGGGG/-|frameshift_variant;nc|ENSG00000177303|Q8WXE0-2|CASKIN2;ENSG00000177303|ENST00000321617|CASKIN2	CASKIN2|p.P971Afs*141|1|0.82|ENSG00000177303|chr17:75502139-75502163|CGGGGGGCACGGGTGTCTCTCGGGG/-|frameshift_variant	CASKIN2|p.P971Afs*141|1|0.82|ENSG00000177303|chr17:75502139-75502163|CGGGGGGCACGGGTGTCTCTCGGGG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	490.6763916015625	2	490.276575	978.538597	-0.36314	-0.00017804	0.10651	5.2218E-05	-0.25664	-0.00012582	490.2765824145694	42.024	0.45672	42.024	41.777	42.233	0					23	8	4	0	0	0	0.029064	1	14521	14521		75.761	27.415	1	9879500			3331	292	2162	2187	3253	3253					0.048469382116991255
ALYGKTEVV	9	Unmodified	_ALYGKTEVV_					0	0	0		CASKIN2|p.P971Afs*141|1|0.82|ENSG00000177303|chr17:75502139-75502163|CGGGGGGCACGGGTGTCTCTCGGGG/-|frameshift_variant;nc|ENSG00000177303|Q8WXE0-2|CASKIN2;ENSG00000177303|ENST00000321617|CASKIN2	CASKIN2|p.P971Afs*141|1|0.82|ENSG00000177303|chr17:75502139-75502163|CGGGGGGCACGGGTGTCTCTCGGGG/-|frameshift_variant	CASKIN2|p.P971Afs*141|1|0.82|ENSG00000177303|chr17:75502139-75502163|CGGGGGGCACGGGTGTCTCTCGGGG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	490.6760559082031	2	490.276575	978.538597	-0.7929	-0.00038874	0.089055	4.3662E-05	-0.70385	-0.00034508	490.27659533816507	41.197	0.55709	41.972	41.743	42.3	0.77451					16	10	2	0	0	0	0.087712	1	15261	15261		75.761	27.415	1	9182500			3332	292	2162	2187	3254	3254					0.048469382116991255
ALYGRLEVV	9	Unmodified	_ALYGRLEVV_					0	0	0		nc|ENSG00000064999|Q92625-2|ANKS1A;ENSG00000064999|ENST00000360359|ANKS1A	nc|ENSG00000064999|Q92625-2|ANKS1A	nc|ENSG00000064999|Q92625-2|ANKS1A	MULTI-SECPEP	A375_MHC_IP_R2	2	510.6974182128906	2	510.297842	1018.58113	-1.0384	-0.00052989	1.1795	0.00060189	0.1411	7.2003E-05	510.2982392514416	71.516	0.20294	72.25	72.111	72.314	0.73421					8	3	3	0	0	0	0.23894	1	27155	27155		55.503	17.529	1	2367900			3333	1365	2163	2188	3255	3255					0.07258333339950696
ALYHEQLAL	9	Unmodified	_ALYHEQLAL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	A375_MHC_IP_R1	1	529.6871337890625	2	529.287474	1056.5604	-0.83558	-0.00044226	0.12231	6.474E-05	-0.71327	-0.00037752	529.2874079222003	67.082	0.6142	67.082	66.785	67.399	0					18	11	2	0	0	0	0.59098	1	24305	24305		21.537	1.1224	1	1468100			3334	3688	2164	2189	3256	3256					0.034377429602727716
ALYHEQLAL	9	Unmodified	_ALYHEQLAL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	A375_MHC_IP_R2	2	529.7109985351562	2	529.287474	1056.5604	-0.73544	-0.00038926	0.30296	0.00016035	-0.43248	-0.00022891	529.2876088420154	66.193	0.51077	66.931	66.68	67.191	0.73811					13	9	2	0	0	0	0.4261	1	25087	25087		37.974	8.8924	1	1808300			3335	3688	2164	2189	3257	3257					0.034377429602727716
ALYNALDKV	9	Unmodified	_ALYNALDKV_					0	0	0		nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8;ENST00000524925.1_1_11:77817969-77825348:-|nuORF	nc|ENSG00000159063|Q9BVK2-2|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	MULTI-SECPEP	A375_MHC_IP_R1	1	504.181640625	2	503.782025	1005.5495	-0.3522	-0.00017743	-1.6635	-0.00083805	-2.0157	-0.0010155	503.7817643521903	63.812	1.4806	63.812	62.711	64.191	0					36	28	2	0	0	0	0.10362	1	23067	23067		55.503	19.376	1	3649000			3336	6345	2165	2190	3258	3258					0.04694340585979262
ALYNALDKV	9	Unmodified	_ALYNALDKV_					0	0	0		nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8;ENST00000524925.1_1_11:77817969-77825348:-|nuORF	nc|ENSG00000159063|Q9BVK2-2|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	MULTI-SECPEP	A375_MHC_IP_R2	2	503.3001708984375	2	503.782025	1005.5495	-0.63523	-0.00032002	-0.9513	-0.00047925	-1.5865	-0.00079927	503.78212450100943	62.935	0.70678	63.677	63.333	64.04	0.74263					24	13	3	0	0	0	0.20451	1	23880	23880		41.956	2.0059	1	3391000			3337	6345	2165	2190	3259	3259					0.04694340585979262
ALYPNVVQV	9	Unmodified	_ALYPNVVQV_					0	0	0		ENSG00000163214|ENST00000457308|DHX57;ENST00000497514.2_1_2:39033679-39046075:-|nuORF	ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MULTI-SECPEP	A375_MHC_IP_R1	1	502.18450927734375	2	501.784567	1001.55458	-0.40049	-0.00020096	-0.24901	-0.00012495	-0.6495	-0.00032591	501.7845443591309	95.942	0.86214	95.942	95.565	96.427	0					63	16	5	0	0	0	0.050875	1	35202	35202		74.423	18.246	1	33041000			3338	6638	2166	2191	3260	3260					0.05386644448617517
ALYPNVVQV	9	Unmodified	_ALYPNVVQV_					0	0	0		ENSG00000163214|ENST00000457308|DHX57;ENST00000497514.2_1_2:39033679-39046075:-|nuORF	ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	A375_MHC_IP_R2	2	502.1847229003906	2	501.784567	1001.55458	-0.37155	-0.00018644	-0.16012	-8.0344E-05	-0.53167	-0.00026678	501.78452146510926	95.206	0.76396	95.957	95.583	96.347	0.75045					56	14	5	0	0	0	0.0070665	1	36099	36099		131.3	56.875	1	37108000			3339	6638	2166	2191	3261	3261					0.05386644448617517
ALYRDCFMVRY	11	Unmodified	_ALYRDCFMVRY_					0	0	0			REV__OR10G8|p.S118F|1|0.64|ENSG00000234560|chr11:124029975-124029975|C/T|missense_variant	REV__OR10G8|p.S118F|1|0.64|ENSG00000234560|chr11:124029975-124029975|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	479.463623046875	3	479.565297	1435.67406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.535	1	55.286	54.786	55.786	0.75075								0	0	0	0.16305	1	20581	20581		2.8433	0	1		+		3340	27648	2167	2192	3262	3262					-0.02634853260633463
ALYSAEHGL	9	Unmodified	_ALYSAEHGL_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MSMS	A375_MHC_IP_R1	1	480.66119384765625	2	480.742899	959.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.451	1	43.451	42.951	43.951	0								0	0	0	0.14905	1	15103	15103		23.148	0	1				3341	8061	2168	2193	3263	3263					-0.010110919992371237
ALYSAEHGL	9	Unmodified	_ALYSAEHGL_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MSMS	A375_MHC_IP_R2	2	480.6611022949219	2	480.742899	959.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.612	1	43.385	42.885	43.885	0.7724								0	0	0	0.14359	1	15858	15858		28.487	6.7402	1				3342	8061	2168	2193	3264	3264					-0.010110919992371237
ALYSKGILL	9	Unmodified	_ALYSKGILL_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-SECPEP	A375_MHC_IP_R2	2	489.6517028808594	2	489.305136	976.595718	-0.5035	-0.00024637	-0.45896	-0.00022457	-0.96246	-0.00047094	489.304840127134	79.802	0.51033	80.547	80.299	80.81	0.74473					15	9	2	0	0	0	0.54812	1	30348	30348		31.268	4.3847	1	3621800			3343	3161	2169	2194	3265	3265					0.10648405488097978
ALYTLPRSV	9	Unmodified	_ALYTLPRSV_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.Y6402Ffs*2|1|0.34|ENSG00000183091|chr2:151492486-151492487|AT/-|frameshift_variant	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MULTI-SECPEP	A375_MHC_IP_R2	2	510.1633605957031	2	510.297842	1018.58113	-1.0048	-0.00051274	-0.68676	-0.00035045	-1.6915	-0.00086319	510.29720486070755	51.666	0.25388	52.419	52.321	52.574	0.75225					6	4	2	0	0	0	0.74651	1	19498	19498		4.756	0	1	773900			3344	8464	2170	2195	3266	3266					0.07258333339950696
ALYTVIETV	9	Unmodified	_ALYTVIETV_					0	0	0		nc|ENSG00000165476|Q6NUK4-2|REEP3;ENSG00000165476|ENST00000373758|REEP3	nc|ENSG00000165476|Q6NUK4-2|REEP3	nc|ENSG00000165476|Q6NUK4-2|REEP3	MULTI-SECPEP	A375_MHC_IP_R1	1	505.1831359863281	2	504.784233	1007.55391	-0.10921	-5.5128E-05	-0.62047	-0.0003132	-0.72968	-0.00036833	504.78390088296067	108.49	0.35459	108.49	108.31	108.66	0					9	6	2	0	0	0	0.050875	1	39804	39804		85.357	0.084716	1	2897800			3345	6957	2171	2196	3267	3267					0.05043805008904201
ALYTVIETV	9	Unmodified	_ALYTVIETV_					0	0	0		nc|ENSG00000165476|Q6NUK4-2|REEP3;ENSG00000165476|ENST00000373758|REEP3	nc|ENSG00000165476|Q6NUK4-2|REEP3	nc|ENSG00000165476|Q6NUK4-2|REEP3	MULTI-SECPEP	A375_MHC_IP_R1	1	1008.9716186523438	1	1008.56119	1007.55391	0.45866	0.00046259	1.4625	0.001475	1.9211	0.0019376	1008.5625969417794	108.48	0.45627	108.48	108.26	108.71	0					14	8	2	0	0	0	0.050875	1	39758	39758		74.423	19.649	1	4034700			3346	6957	2171	2196	3268	3268					0.05043805008904201
ALYTVIETV	9	Unmodified	_ALYTVIETV_					0	0	0		nc|ENSG00000165476|Q6NUK4-2|REEP3;ENSG00000165476|ENST00000373758|REEP3	nc|ENSG00000165476|Q6NUK4-2|REEP3	nc|ENSG00000165476|Q6NUK4-2|REEP3	MULTI-SECPEP	A375_MHC_IP_R2	2	1008.960693359375	1	1008.56119	1007.55391	-0.01997	-2.0141E-05	2.2342	0.0022533	2.2142	0.0022332	1008.5618047108488	107.73	0.71399	108.49	107.95	108.66	0.75436					19	13	2	0	0	0	0.030624	1	40682	40682		100.37	29.238	1	2495700			3347	6957	2171	2196	3269	3269					0.05043805008904201
ALYVAVVNV	9	Unmodified	_ALYVAVVNV_					0	0	0		nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENSG00000105677|ENST00000222284|TMEM147;ENST00000593027.6_1_19:36036533-36038346:+|nuORF	nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000593027.6_1_19:36036533-36038346:+|nuORF	nc|ENSG00000105677|Q9BVK8-2|TMEM147	MULTI-MSMS	A375_MHC_IP_R1	1	948.5729370117188	1	947.556044	946.548768	0.27418	0.0002598	0.29658	0.00028103	0.57076	0.00054083	947.5562444537344	107.93	0.45641	107.93	107.7	108.15	0					14	8	2	0	0	0	0.40079	1	39607	39607		24.674	15.291	1	2792900			3348	2629;13821	2172	2197	3270	3270					0.07335545936950894
ALYVAVVNV	9	Unmodified	_ALYVAVVNV_					0	0	0		nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENSG00000105677|ENST00000222284|TMEM147;ENST00000593027.6_1_19:36036533-36038346:+|nuORF	nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000593027.6_1_19:36036533-36038346:+|nuORF	nc|ENSG00000105677|Q9BVK8-2|TMEM147	MULTI-MSMS	A375_MHC_IP_R1	1	474.68182373046875	2	474.28166	946.548768	-0.23263	-0.00011033	0.72843	0.00034548	0.49579	0.00023515	474.2819273874988	107.93	0.45656	107.93	107.75	108.21	0					14	8	2	0	0	0	0.10558	1	39628	39628		49.669	32.727	1	1789300			3349	2629;13821	2172	2197	3271	3271					0.07335545936950894
ALYVAVVNV	9	Unmodified	_ALYVAVVNV_					0	0	0		nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENSG00000105677|ENST00000222284|TMEM147;ENST00000593027.6_1_19:36036533-36038346:+|nuORF	nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000593027.6_1_19:36036533-36038346:+|nuORF	nc|ENSG00000105677|Q9BVK8-2|TMEM147	MULTI-SECPEP	A375_MHC_IP_R2	2	948.109619140625	1	947.556044	946.548768	-0.2579	-0.00024438	-0.08266	-7.8325E-05	-0.34056	-0.0003227	947.5556786439557	107.16	0.40494	107.91	107.64	108.05	0.75436					12	7	2	0	0	0	0.52144	1	40445	40445		30.225	17.693	1	2067100			3350	2629;13821	2172	2197	3272	3272					0.07335545936950894
ALYVSGALSV	10	Unmodified	_ALYVSGALSV_					0	0	0			REV__ENST00000394971.7_1_16:31102457-31105584:-|nuORF	REV__ENST00000394971.7_1_16:31102457-31105584:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	489.72918701171875	2	490.276575	978.538597	-0.44351	-0.00021744	-1.3236	-0.00064891	-1.7671	-0.00086635	490.2754141301766	90.27	0.76195	91.002	90.801	91.563	0.7318					16	14	2	0	0	0	0.24499	1	34356	34356		29.082	0	1	1356800	+		3351	20757	2173	2198	3273	3273					0.04846938211721863
ALYYNPHLL	9	Unmodified	_ALYYNPHLL_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1846923828125	2	552.297842	1102.58113	-0.8204	-0.0004531	-1.6271	-0.00089862	-2.4475	-0.0013517	552.2960261781411	82.166	0.56126	82.909	82.684	83.246	0.74293					15	10	3	0	0	0	0.43707	1	31204	31204		36.044	14.298	1	1353400			3352	9510	2174	2199	3274	3274					0.033943333399292897
AMAPGAPQV	9	Oxidation (M)	_AM(Oxidation (M))APGAPQV_		AM(1)APGAPQV		AM(42)APGAPQV	0	0	1		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	A375_MHC_IP_R2	2	429.61273193359375	2	429.212921	856.411288	-0.34002	-0.00014594	0.29538	0.00012678	-0.04464	-1.916E-05	429.21283865034445	36.049	0.66274	36.812	36.537	37.2	0.76338					25	12	3	0	0	0	0.1478	1	13108	13108		42.095	20.348	1	5579800			3353	5332	2175	2200	3275	3275		286			-0.022661059341203327
AMAPGAPQV	9	Oxidation (M)	_AM(Oxidation (M))APGAPQV_					0	0	1		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	429.212921	856.411288	-0.38376	-0.00016472	0.051956	2.23E-05	-0.3318	-0.00014241	429.21290527207026	36.778	0.70906	36.778	36.439	37.148	0	-0.017049	-9.0517E-05	NaN	42.095	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4416300			3354	5332	2175	2200				286			-0.022661059341203327
AMAPGAPQV	9	Unmodified	_AMAPGAPQV_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	A375_MHC_IP_R2	2	421.17449951171875	2	421.215463	840.416374	-0.11009	-4.6371E-05	0.20552	8.6566E-05	0.095427	4.0195E-05	421.2155479990064	48.462	0.55557	49.22	48.929	49.485	0.75736					15	10	2	0	0	0	0.021919	2	18212	18212;18221		81.864	43.713	1	2312500			3355	5332	2175	2201	3276;3277	3276					-0.010218020715115017
AMAPGAPQV	9	Unmodified	_AMAPGAPQV_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MATCH	A375_MHC_IP_R1	1		2	421.215463	840.416374	0.54305	0.00022874	-0.58563	-0.00024668	-0.042584	-1.7937E-05	421.2151021813283	49.209	0.45612	49.209	48.983	49.439	0	-0.0051505	-0.00023351	NaN	81.864	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1090900			3356	5332	2175	2201							-0.010218020715115017
AMAVVEHDP	9	Unmodified	_AMAVVEHDP_					0	0	0			REV__ENSG00000141867|ENST00000679869|BRD4	REV__ENSG00000141867|ENST00000679869|BRD4	MULTI-MSMS	A375_MHC_IP_R1	1	485.1296081542969	2	484.728935	967.443317	-0.25328	-0.00012277	1.7967	0.00087089	1.5434	0.00074812	484.7295115931629	104.26	0.50885	104.26	104.03	104.54	0					16	9	2	0	0	0	0.43185	1	38313	38313		23.148	1.4018	1	1605100	+		3357	19288	2176	2202	3278	3278					-0.04170738250979866
AMAVVEHDP	9	Unmodified	_AMAVVEHDP_					0	0	0			REV__ENSG00000141867|ENST00000679869|BRD4	REV__ENSG00000141867|ENST00000679869|BRD4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	484.728935	967.443317	-0.25328	-0.00012277	1.7967	0.00087089	1.5434	0.00074812	484.7295115931629	104.26	0.50885	104.26	104.03	104.54	0	0.056494	-0.00022059	NaN	23.148	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1605100	+		3358	19288	2176	2202							-0.04170738250979866
AMAVVEHDP	9	Unmodified	_AMAVVEHDP_					0	0	0			REV__ENSG00000141867|ENST00000679869|BRD4	REV__ENSG00000141867|ENST00000679869|BRD4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	484.728935	967.443317	-0.56829	-0.00027546	2.054	0.00099563	1.4857	0.00072016	484.72987917937223	103.38	0.45823	104.15	103.99	104.45	0.76428	-0.056494	2.888E-05	NaN	23.148	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1463500	+		3359	19288	2176	2202							-0.04170738250979866
AMDDPNCNF	9	Unmodified	_AMDDPNCNF_					0	0	0			REV__ENST00000586435.1_1_17:33316537-33318256:+|nuORF	REV__ENST00000586435.1_1_17:33316537-33318256:+|nuORF	MSMS	A375_MHC_IP_R2	2	513.6918334960938	2	513.68641	1025.35827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.645	1	47.409	46.909	47.909	0.76365								0	0	0	0.15486	1	17472	17472		4.756	1.8668	1		+		3360	26387	2177	2203	3279	3279					-0.15339851779094715
AMDPVSVSY	9	Oxidation (M)	_AM(Oxidation (M))DPVSVSY_		AM(1)DPVSVSY		AM(48)DPVSVSY	0	0	1		ENSG00000109787|ENST00000261438|KLF3;nc|ENSG00000109787|P57682-2|KLF3	ENSG00000109787|ENST00000261438|KLF3	ENSG00000109787|ENST00000261438|KLF3	MULTI-MSMS	A375_MHC_IP_R1	1	493.1205139160156	2	492.720775	983.426998	-0.28273	-0.00013931	-0.17215	-8.4823E-05	-0.45488	-0.00022413	492.72065272915813	55.81	1.0683	55.81	55.126	56.194	0					45	20	3	0	0	0	0.11296	1	20056	20056		48.346	16.229	1	6405300			3361	2892	2178	2204	3280	3280		135			-0.06537864207723487
AMDPVSVSY	9	Oxidation (M)	_AM(Oxidation (M))DPVSVSY_		AM(1)DPVSVSY		AM(55)DPVSVSY	0	0	1		ENSG00000109787|ENST00000261438|KLF3;nc|ENSG00000109787|P57682-2|KLF3	ENSG00000109787|ENST00000261438|KLF3	ENSG00000109787|ENST00000261438|KLF3	MULTI-MSMS	A375_MHC_IP_R1	1	492.68084716796875	2	492.720775	983.426998	-0.38191	-0.00018818	0.076291	3.759E-05	-0.30562	-0.00015059	492.7208327515067	58.471	2.1337	58.471	57.618	59.752	0					59	41	2	0	0	0	0.077132	2	21188	21188;21293		54.774	16.622	1	1390900			3362	2892	2178	2204	3281;3282	3281		135			-0.06537864207723487
AMDPVSVSY	9	Unmodified	_AMDPVSVSY_					0	0	0		ENSG00000109787|ENST00000261438|KLF3;nc|ENSG00000109787|P57682-2|KLF3	ENSG00000109787|ENST00000261438|KLF3	ENSG00000109787|ENST00000261438|KLF3	MULTI-MSMS	A375_MHC_IP_R1	1	485.17431640625	2	484.723318	967.432083	-0.11932	-5.7836E-05	-0.22323	-0.00010821	-0.34255	-0.00016604	484.7232065006277	72.361	0.60754	72.361	72.069	72.676	0					18	11	2	0	0	0	0.12592	1	26320	26320		46.021	17.534	1	2408700			3363	2892	2178	2205	3283	3283					-0.05293560345114656
AMDPVSVSY	9	Unmodified	_AMDPVSVSY_					0	0	0		ENSG00000109787|ENST00000261438|KLF3;nc|ENSG00000109787|P57682-2|KLF3	ENSG00000109787|ENST00000261438|KLF3	ENSG00000109787|ENST00000261438|KLF3	MULTI-MSMS	A375_MHC_IP_R2	2	485.1226806640625	2	484.723318	967.432083	-0.90121	-0.00043684	-0.073308	-3.5534E-05	-0.97452	-0.00047237	484.72329276844425	71.705	0.60848	72.44	72.111	72.72	0.73421					21	11	3	0	0	0	0.05754	2	27190	27190;27206		61.357	39.611	1	3715700			3364	2892	2178	2205	3284;3285	3284					-0.05293560345114656
AMDVYKNLY	9	Oxidation (M)	_AM(Oxidation (M))DVYKNLY_		AM(1)DVYKNLY		AM(120)DVYKNLY	0	0	1		ENST00000518442.5_1_8:109247181-109261015:-|nuORF;ENSG00000104408|ENST00000220849|EIF3E	ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENST00000518442.5_1_8:109247181-109261015:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	567.1909790039062	2	566.7708	1131.52705	-0.22471	-0.00012736	0.68531	0.00038842	0.4606	0.00026106	566.7713630039497	47.758	0.70602	47.758	47.467	48.173	0					22	9	3	0	0	0	0.0098926	1	16843	16843		118.07	64.236	1	4189800			3365	2507	2179	2206	3286	3286		111			-0.0334562687394282
AMDVYKNLY	9	Oxidation (M)	_AM(Oxidation (M))DVYKNLY_		AM(1)DVYKNLY		AM(93)DVYKNLY	0	0	1		ENST00000518442.5_1_8:109247181-109261015:-|nuORF;ENSG00000104408|ENST00000220849|EIF3E	ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENST00000518442.5_1_8:109247181-109261015:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	567.170654296875	2	566.7708	1131.52705	-0.19327	-0.00010954	0.49619	0.00028123	0.30292	0.00017169	566.7711793039267	47.049	0.66109	47.81	47.513	48.174	0.76128					28	12	4	0	0	0	0.03341	1	17670	17670		93.166	56.66	1	5373500			3366	2507	2179	2206	3287	3287		111			-0.0334562687394282
AMDVYKNLY	9	Unmodified	_AMDVYKNLY_					0	0	0		ENST00000518442.5_1_8:109247181-109261015:-|nuORF;ENSG00000104408|ENST00000220849|EIF3E	ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENST00000518442.5_1_8:109247181-109261015:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	558.189697265625	2	558.773342	1115.53213	-0.55154	-0.00030819	-0.016017	-8.9499E-06	-0.56756	-0.00031714	558.7732255687279	64.511	0.86417	64.511	64.09	64.954	0					28	16	3	0	0	0	0.12771	1	23332	23332		45.7	22.963	1	3691800			3367	2507	2179	2207	3288	3288					-0.021013230113112513
AMDVYKNLY	9	Unmodified	_AMDVYKNLY_					0	0	0		ENST00000518442.5_1_8:109247181-109261015:-|nuORF;ENSG00000104408|ENST00000220849|EIF3E	ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENST00000518442.5_1_8:109247181-109261015:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	559.1725463867188	2	558.773342	1115.53213	-0.63661	-0.00035572	0.36769	0.00020545	-0.26892	-0.00015026	558.7732210459346	63.81	0.76271	64.551	64.139	64.902	0.74022					30	14	3	0	0	0	0.056023	1	24190	24190		85.642	39.942	1	5536500			3368	2507	2179	2207	3289	3289					-0.021013230113112513
AMFDFSEKL	9	Unmodified	_AMFDFSEKL_					0	0	0		ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	MULTI-SECPEP	A375_MHC_IP_R1	1	544.0325317382812	2	544.260068	1086.50558	-0.51527	-0.00028044	-2.0155	-0.001097	-2.5308	-0.0013774	544.2588792730552	96.572	0.50735	96.572	96.274	96.781	0					15	9	2	0	0	0	0.5212	1	35470	35470		26.268	2.2476	1	1143400			3369	4039	2180	2208	3290	3290					-0.034210119026511165
AMFDISQKL	9	Unmodified	_AMFDISQKL_					0	0	0			REV__ENST00000406170.1_1_6:111751648-111751957:+|nuORF	REV__ENST00000406170.1_1_6:111751648-111751957:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	526.1950073242188	2	526.775885	1051.53722	-0.42568	-0.00022424	-3.2337	-0.0017034	-3.6594	-0.0019277	527.275121835001	55.745	0.50803	55.745	55.584	56.092	0					13	9	2	0	0	0	0.60917	1	19989	19989		25.399	4.9848	1	992370	+		3370	15525	2181	2209	3291	3291					0.013509808512935706
AMFDKKVQL	9	Unmodified	_AMFDKKVQL_					0	0	0		ENSG00000182253|ENST00000336292|SYNM;nc|ENSG00000182253|O15061-2|SYNM	ENSG00000182253|ENST00000336292|SYNM	ENSG00000182253|ENST00000336292|SYNM	MULTI-SECPEP	A375_MHC_IP_R1	1	540.6993408203125	2	540.299527	1078.5845	-0.1205	-6.5108E-05	-2.1022	-0.0011358	-2.2227	-0.0012009	540.2994903232037	49.107	0.60833	49.107	48.831	49.439	0					34	11	4	0	0	0	0.087712	1	17340	17340		57.722	32.323	1	5988600			3371	8392	2182	2210	3292	3292					0.04835260122285945
AMFDKKVQL	9	Unmodified	_AMFDKKVQL_					0	0	0		ENSG00000182253|ENST00000336292|SYNM;nc|ENSG00000182253|O15061-2|SYNM	ENSG00000182253|ENST00000336292|SYNM	ENSG00000182253|ENST00000336292|SYNM	MULTI-MSMS	A375_MHC_IP_R2	2	360.93536376953125	3	360.535444	1078.5845	-0.11463	-4.1327E-05	-0.22407	-8.0784E-05	-0.33869	-0.00012211	360.5353247490054	48.096	0.75523	48.858	48.632	49.387	0.76128					30	14	3	0	0	0	0.01574	1	18058	18058		70.332	40.491	1	15023000			3372	8392	2182	2210	3293	3293					0.04835260122285945
AMFDKKVQL	9	Unmodified	_AMFDKKVQL_					0	0	0		ENSG00000182253|ENST00000336292|SYNM;nc|ENSG00000182253|O15061-2|SYNM	ENSG00000182253|ENST00000336292|SYNM	ENSG00000182253|ENST00000336292|SYNM	MULTI-SECPEP	A375_MHC_IP_R2	2	540.699462890625	2	540.299527	1078.5845	-0.7693	-0.00041565	-1.2881	-0.00069597	-2.0574	-0.0011116	540.2997927578896	48.172	0.8049	48.931	48.58	49.385	0.75933					42	15	4	0	0	0	0.11849	1	18077	18077		53.404	26.52	1	7149600			3373	8392	2182	2210	3294	3294					0.04835260122285945
AMFDKKVQL	9	Oxidation (M)	_AM(Oxidation (M))FDKKVQL_		AM(1)FDKKVQL		AM(78)FDKKVQL	0	0	1		ENSG00000182253|ENST00000336292|SYNM;nc|ENSG00000182253|O15061-2|SYNM	ENSG00000182253|ENST00000336292|SYNM	ENSG00000182253|ENST00000336292|SYNM	MULTI-SECPEP	A375_MHC_IP_R1	1	548.69677734375	2	548.296985	1094.57942	-0.54998	-0.00030155	-0.16293	-8.9336E-05	-0.71292	-0.00039089	548.2969712589527	34.123	0.40453	34.123	33.898	34.303	0					19	7	3	0	0	0	0.058501	1	11204	11204		78.06	48.979	1	7282000			3374	8392	2182	2211	3295	3295		405			0.03590956259677114
AMFDKKVQL	9	Oxidation (M)	_AM(Oxidation (M))FDKKVQL_		AM(1)FDKKVQL		AM(40)FDKKVQL	0	0	1		ENSG00000182253|ENST00000336292|SYNM;nc|ENSG00000182253|O15061-2|SYNM	ENSG00000182253|ENST00000336292|SYNM	ENSG00000182253|ENST00000336292|SYNM	MULTI-SECPEP	A375_MHC_IP_R2	2	366.2669982910156	3	365.867082	1094.57942	-0.18932	-6.9266E-05	0.027021	9.8859E-06	-0.1623	-5.938E-05	365.8670713664821	33.277	0.40756	34.029	33.789	34.196	0.75225					25	7	5	0	0	0	0.43207	1	11885	11885		40.239	36.05	1	16870000			3375	8392	2182	2211	3296	3296		405			0.03590956259677114
AMFDKKVQL	9	Oxidation (M)	_AM(Oxidation (M))FDKKVQL_		AM(1)FDKKVQL		AM(74)FDKKVQL	0	0	1		ENSG00000182253|ENST00000336292|SYNM;nc|ENSG00000182253|O15061-2|SYNM	ENSG00000182253|ENST00000336292|SYNM	ENSG00000182253|ENST00000336292|SYNM	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6962280273438	2	548.296985	1094.57942	-1.0825	-0.00059351	0.12008	6.5841E-05	-0.96238	-0.00052767	548.2969983375683	33.312	0.86235	34.064	33.789	34.651	0.75225					24	16	3	0	0	0	0.10495	1	11911	11911		74.2	43.563	1	5455000			3376	8392	2182	2211	3297	3297		405			0.03590956259677114
AMFENFVSV	9	Oxidation (M)	_AM(Oxidation (M))FENFVSV_		AM(1)FENFVSV		AM(68)FENFVSV	0	0	1		ENSG00000136937|ENST00000375147|NCBP1;NCBP1|p.F710Sfs*10|1|0.05|ENSG00000136937|chr9:97668955-97668955|T/-|frameshift_variant;ENST00000478100.3_1_9:100403935-100409818:+|nuORF	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-MSMS	A375_MHC_IP_R1	1	530.6443481445312	2	530.244418	1058.47428	-0.54435	-0.00028864	-0.10158	-5.3861E-05	-0.64593	-0.0003425	530.2443807370297	100.71	0.60764	100.71	100.33	100.94	0					31	11	4	0	0	0	0.040308	2	36981	36981;37084		68.081	35.775	1	9803300			3377	4844	2183	2212	3298;3299	3298		256			-0.052615849367384726
AMFENFVSV	9	Oxidation (M)	_AM(Oxidation (M))FENFVSV_		AM(1)FENFVSV		AM(100)FENFVSV	0	0	1		ENSG00000136937|ENST00000375147|NCBP1;NCBP1|p.F710Sfs*10|1|0.05|ENSG00000136937|chr9:97668955-97668955|T/-|frameshift_variant;ENST00000478100.3_1_9:100403935-100409818:+|nuORF	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-MSMS	A375_MHC_IP_R1	1	530.6444091796875	2	530.244418	1058.47428	-0.52194	-0.00027675	-0.21334	-0.00011312	-0.73528	-0.00038988	530.2444317972555	101.26	0.70853	101.26	100.94	101.65	0					39	13	4	0	0	0	0.009271	1	37184	37184		103.75	48.975	1	9634800			3378	4844	2183	2212	3300	3300		256			-0.052615849367384726
AMFENFVSV	9	Oxidation (M)	_AM(Oxidation (M))FENFVSV_		AM(1)FENFVSV		AM(68)FENFVSV	0	0	1		ENSG00000136937|ENST00000375147|NCBP1;NCBP1|p.F710Sfs*10|1|0.05|ENSG00000136937|chr9:97668955-97668955|T/-|frameshift_variant;ENST00000478100.3_1_9:100403935-100409818:+|nuORF	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-MSMS	A375_MHC_IP_R1	1	530.6442260742188	2	530.244418	1058.47428	-0.50495	-0.00026775	-0.039565	-2.0979E-05	-0.54452	-0.00028873	530.2443290119697	104.96	1.1154	104.96	104.24	105.35	0					39	21	2	0	0	0	0.040308	1	38464	38464		68.081	35.775	1	2233500			3379	4844	2183	2212	3301	3301		256			-0.052615849367384726
AMFENFVSV	9	Oxidation (M)	_AM(Oxidation (M))FENFVSV_		AM(1)FENFVSV		AM(92)FENFVSV	0	0	1		ENSG00000136937|ENST00000375147|NCBP1;NCBP1|p.F710Sfs*10|1|0.05|ENSG00000136937|chr9:97668955-97668955|T/-|frameshift_variant;ENST00000478100.3_1_9:100403935-100409818:+|nuORF	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-MSMS	A375_MHC_IP_R2	2	530.7183227539062	2	530.244418	1058.47428	-0.36974	-0.00019605	-0.16644	-8.8255E-05	-0.53618	-0.00028431	530.2443398199905	100	0.65903	100.76	100.32	100.98	0.76278					30	12	3	0	0	0	0.012968	1	37947	37947		92.491	44.146	1	7464600			3380	4844	2183	2212	3302	3302		256			-0.052615849367384726
AMFENFVSV	9	Oxidation (M)	_AM(Oxidation (M))FENFVSV_		AM(1)FENFVSV		AM(100)FENFVSV	0	0	1		ENSG00000136937|ENST00000375147|NCBP1;NCBP1|p.F710Sfs*10|1|0.05|ENSG00000136937|chr9:97668955-97668955|T/-|frameshift_variant;ENST00000478100.3_1_9:100403935-100409818:+|nuORF	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-MSMS	A375_MHC_IP_R2	2	530.2176513671875	2	530.244418	1058.47428	-0.42624	-0.00022601	0.012174	6.4553E-06	-0.41407	-0.00021956	530.2444239221257	100.51	0.66615	101.27	100.98	101.65	0.76278					32	12	3	0	0	0	0.009271	2	38116	38074;38116		103.75	48.975	1	9126500			3381	4844	2183	2212	3303;3304	3304		256			-0.052615849367384726
AMFENFVSV	9	Oxidation (M)	_AM(Oxidation (M))FENFVSV_		AM(1)FENFVSV		AM(82)FENFVSV	0	0	1		ENSG00000136937|ENST00000375147|NCBP1;NCBP1|p.F710Sfs*10|1|0.05|ENSG00000136937|chr9:97668955-97668955|T/-|frameshift_variant;ENST00000478100.3_1_9:100403935-100409818:+|nuORF	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-MSMS	A375_MHC_IP_R2	2	530.7003173828125	2	530.244418	1058.47428	-0.55384	-0.00029367	-0.088236	-4.6786E-05	-0.64208	-0.00034046	530.2442406458082	104.39	0.91504	105.16	104.4	105.31	0.76308					30	17	2	0	0	0	0.021889	3	39526	39469;39477;39526		81.89	43.916	1	1894900			3382	4844	2183	2212	3305;3306;3307	3307		256			-0.052615849367384726
AMFENFVSV	9	Unmodified	_AMFENFVSV_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1;NCBP1|p.F710Sfs*10|1|0.05|ENSG00000136937|chr9:97668955-97668955|T/-|frameshift_variant;ENST00000478100.3_1_9:100403935-100409818:+|nuORF	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-MSMS	A375_MHC_IP_R1	1	522.72607421875	2	522.24696	1042.47937	-0.9601	-0.00050141	0.23182	0.00012107	-0.72828	-0.00038034	522.247027627282	122.12	0.3555	122.12	121.92	122.28	0					10	6	2	0	0	0	0.091096	1	45406	45406		52.268	27.277	1	14400000			3383	4844	2183	2213	3308	3308					-0.040172810741296416
AMFENFVSV	9	Unmodified	_AMFENFVSV_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1;NCBP1|p.F710Sfs*10|1|0.05|ENSG00000136937|chr9:97668955-97668955|T/-|frameshift_variant;ENST00000478100.3_1_9:100403935-100409818:+|nuORF	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-MATCH	A375_MHC_IP_R2	2		2	522.24696	1042.47937	-0.58915	-0.00030768	-0.3245	-0.00016947	-0.91365	-0.00047715	522.7483264150817	121.3	0.30509	121.75	121.62	121.93	0.44488	-0.18725	-0.00037714	NaN	52.268	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25468000			3384	4844	2183	2213							-0.040172810741296416
AMFGKLMTI	9	Unmodified	_AMFGKLMTI_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-SECPEP	A375_MHC_IP_R1	1	506.67144775390625	2	506.271924	1010.52929	-0.36135	-0.00018294	-0.28187	-0.0001427	-0.64323	-0.00032565	506.2717601931755	98.886	0.66071	98.886	98.607	99.268	0					23	12	3	0	0	0	0.13208	1	36315	36315		66.457	35.82	1	3902000			3385	3744	2184	2214	3309	3309					0.02445130330181655
AMFGKLMTI	9	Unmodified	_AMFGKLMTI_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-SECPEP	A375_MHC_IP_R2	2	506.6715087890625	2	506.271924	1010.52929	-0.80046	-0.00040525	0.12498	6.3275E-05	-0.67548	-0.00034197	506.27197507089545	97.855	0.45909	98.611	98.381	98.84	0.75586					16	8	2	0	0	0	0.087712	1	37136	37136		75.761	45.124	1	3864700			3386	3744	2184	2214	3310	3310					0.02445130330181655
AMFGKLMTI	9	2 Oxidation (M)	_AM(Oxidation (M))FGKLM(Oxidation (M))TI_		AM(1)FGKLM(1)TI		AM(44)FGKLM(44)TI	0	0	2		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	A375_MHC_IP_R2	2	522.666259765625	2	522.266838	1042.51912	-0.91546	-0.00047811	2.0216	0.0010558	1.1061	0.00057769	522.268043863736	57.497	0.60965	58.246	57.968	58.578	0.74894					20	11	2	0	0	0	0.13845	1	21721	21721		43.772	19.752	1	3390300			3387	3744	2184	2215	3311	3311		191;192			-0.00043477395047375467
AMFMVKNG	8	Unmodified	_AMFMVKNG_					0	0	0		ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1;ENST00000472564.1_1_13:113960786-113974926:+|nuORF	ENSG00000185896|ENST00000332556|LAMP1	ENSG00000185896|ENST00000332556|LAMP1	MULTI-MSMS	A375_MHC_IP_R2	2	449.6614685058594	2	449.219691	896.42483	-0.23381	-0.00010503	-0.91712	-0.00041199	-1.1509	-0.00051702	449.21927291423185	42.826	0.70866	43.598	43.218	43.926	0.7724					21	13	2	0	0	0	0.75805	1	16035	16035		18.135	8.7875	1	2598600			3388	8702	2185	2216	3312	3312					-0.027525714265266288
AMGEKSFSV	9	Oxidation (M)	_AM(Oxidation (M))GEKSFSV_		AM(1)GEKSFSV		AM(77)GEKSFSV	0	0	1		ENSG00000148358|ENST00000347136|GPR107;ENST00000493417.5_1_9:132839594-132891041:+|nuORF;nc|ENSG00000148358|Q5VW38|GPR107;nc|ENSG00000148358|Q5VW38-3|GPR107	ENSG00000148358|ENST00000347136|GPR107	ENSG00000148358|ENST00000347136|GPR107	MULTI-MSMS	A375_MHC_IP_R1	1	486.6284484863281	2	486.228768	970.442982	-0.58195	-0.00028296	0.24634	0.00011978	-0.33561	-0.00016318	486.22882240475997	30.208	0.4032	30.208	30.049	30.453	0					13	7	2	0	0	0	0.027818	1	9586	9586		76.825	25.97	1	7976000			3389	5737	2186	2217	3313	3313		309			-0.04342157970813787
AMGEKSFSV	9	Oxidation (M)	_AM(Oxidation (M))GEKSFSV_					0	0	1		ENSG00000148358|ENST00000347136|GPR107;ENST00000493417.5_1_9:132839594-132891041:+|nuORF;nc|ENSG00000148358|Q5VW38|GPR107;nc|ENSG00000148358|Q5VW38-3|GPR107	ENSG00000148358|ENST00000347136|GPR107	ENSG00000148358|ENST00000347136|GPR107	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	486.228768	970.442982	-1.2697	-0.00061735	0.89861	0.00043693	-0.37105	-0.00018042	486.22911086144177	29.536	0.40271	30.235	30.032	30.434	0.69872	0.013189	0.00023322	NaN	76.825	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6309100			3390	5737	2186	2217				309			-0.04342157970813787
AMGEKSFSV	9	Unmodified	_AMGEKSFSV_					0	0	0		ENSG00000148358|ENST00000347136|GPR107;ENST00000493417.5_1_9:132839594-132891041:+|nuORF;nc|ENSG00000148358|Q5VW38|GPR107;nc|ENSG00000148358|Q5VW38-3|GPR107	ENSG00000148358|ENST00000347136|GPR107	ENSG00000148358|ENST00000347136|GPR107	MULTI-MSMS	A375_MHC_IP_R1	1	478.7181091308594	2	478.23131	954.448068	-0.84159	-0.00040247	0.021525	1.0294E-05	-0.82006	-0.00039218	478.23125260647043	41.407	0.35616	41.407	41.164	41.521	0					12	6	2	0	0	0	0.12771	2	14241	14241;14297		45.7	3.86	1	2610900			3391	5737	2186	2218	3314;3315	3314					-0.03097854108204956
AMGEKSFSV	9	Unmodified	_AMGEKSFSV_					0	0	0		ENSG00000148358|ENST00000347136|GPR107;ENST00000493417.5_1_9:132839594-132891041:+|nuORF;nc|ENSG00000148358|Q5VW38|GPR107;nc|ENSG00000148358|Q5VW38-3|GPR107	ENSG00000148358|ENST00000347136|GPR107	ENSG00000148358|ENST00000347136|GPR107	MULTI-MSMS	A375_MHC_IP_R2	2	478.6306457519531	2	478.23131	954.448068	-0.66411	-0.0003176	0.09684	4.6312E-05	-0.56727	-0.00027128	478.2312483417131	40.565	0.40685	41.34	41.133	41.54	0.77451					12	7	2	0	0	0	0.033808	1	15024	15024		71.708	29.868	1	3554200			3392	5737	2186	2218	3316	3316					-0.03097854108204956
AMGIAPPKV	9	Oxidation (M)	_AM(Oxidation (M))GIAPPKV_		AM(1)GIAPPKV		AM(64)GIAPPKV	0	0	1		ENSG00000117360|ENST00000324862|PRPF3;ENST00000467329.5_1_1:150300781-150316915:+|nuORF;nc|ENSG00000117360|O43395-3|PRPF3	ENSG00000117360|ENST00000324862|PRPF3	ENSG00000117360|ENST00000324862|PRPF3	MULTI-MSMS	A375_MHC_IP_R1	1	450.654296875	2	450.254588	898.494624	-0.18726	-8.4315E-05	-0.4325	-0.00019473	-0.61976	-0.00027905	450.25432820171136	39.452	0.55696	39.452	39.187	39.744	0					16	10	2	0	0	0	0.050162	1	13481	13481		64.236	36.063	1	3952400			3393	3475	2187	2219	3317	3317		176			0.041316305137456766
AMGIAPPKV	9	Oxidation (M)	_AM(Oxidation (M))GIAPPKV_		AM(1)GIAPPKV		AM(55)GIAPPKV	0	0	1		ENSG00000117360|ENST00000324862|PRPF3;ENST00000467329.5_1_1:150300781-150316915:+|nuORF;nc|ENSG00000117360|O43395-3|PRPF3	ENSG00000117360|ENST00000324862|PRPF3	ENSG00000117360|ENST00000324862|PRPF3	MULTI-MSMS	A375_MHC_IP_R2	2	450.6543273925781	2	450.254588	898.494624	-0.62701	-0.00028231	-0.10828	-4.8755E-05	-0.73529	-0.00033107	450.2544577887458	38.639	0.76486	39.413	39.149	39.914	0.77451					20	14	2	0	0	0	0.077132	1	14239	14239		54.774	26.6	1	3068200			3394	3475	2187	2219	3318	3318		176			0.041316305137456766
AMGIAPPKV	9	Unmodified	_AMGIAPPKV_					0	0	0		ENSG00000117360|ENST00000324862|PRPF3;ENST00000467329.5_1_1:150300781-150316915:+|nuORF;nc|ENSG00000117360|O43395-3|PRPF3	ENSG00000117360|ENST00000324862|PRPF3	ENSG00000117360|ENST00000324862|PRPF3	MULTI-MSMS	A375_MHC_IP_R2	2	442.6571044921875	2	442.257131	882.499709	-0.92572	-0.00040941	0.28369	0.00012546	-0.64204	-0.00028394	442.2572847544893	53.401	0.51073	54.152	53.944	54.454	0.75105					15	9	2	0	0	0	0.29981	1	20173	20173		30.637	13.694	1	1673900			3395	3475	2187	2220	3319	3319					0.053759343763545075
AMGIAPPKV	9	Unmodified	_AMGIAPPKV_					0	0	0		ENSG00000117360|ENST00000324862|PRPF3;ENST00000467329.5_1_1:150300781-150316915:+|nuORF;nc|ENSG00000117360|O43395-3|PRPF3	ENSG00000117360|ENST00000324862|PRPF3	ENSG00000117360|ENST00000324862|PRPF3	MULTI-MATCH	A375_MHC_IP_R1	1		2	442.257131	882.499709	0.098496	4.356E-05	-0.49131	-0.00021729	-0.39282	-0.00017373	442.2566542805655	54.2	0.55464	54.2	53.809	54.364	0	0.024209	-0.00039354	NaN	30.637	16	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1564200			3396	3475	2187	2220							0.053759343763545075
AMIEEVFEA	9	Unmodified	_AMIEEVFEA_					0	0	0		ENSG00000124596|ENST00000424266|OARD1	ENSG00000124596|ENST00000424266|OARD1	ENSG00000124596|ENST00000424266|OARD1	MULTI-SECPEP	A375_MHC_IP_R1	1	520.14404296875	2	519.74425	1037.47395	-0.28994	-0.0001507	-0.18345	-9.5346E-05	-0.47339	-0.00024604	519.7441693810607	107.14	0.51127	107.14	106.88	107.39	0					15	9	2	0	0	0	0.50702	1	39329	39329		13.906	3.8321	1	1168300			3397	3918	2188	2221	3320	3320					-0.04329004656574398
AMIELVERL	9	Unmodified	_AMIELVERL_					0	0	0		ENSG00000166326|ENST00000299413|TRIM44	ENSG00000166326|ENST00000299413|TRIM44	ENSG00000166326|ENST00000299413|TRIM44	MULTI-MSMS	A375_MHC_IP_R1	1	537.70458984375	2	537.30481	1072.59507	-0.64271	-0.00034533	-0.35277	-0.00018954	-0.99547	-0.00053487	537.3047029868769	101.08	1.315	101.08	100.63	101.95	0					53	25	4	0	0	0	0.0099679	1	37114	37114		121.53	45.773	1	12820000			3398	7058	2189	2222	3321	3321					0.061672427767234694
AMIELVERL	9	Unmodified	_AMIELVERL_					0	0	0		ENSG00000166326|ENST00000299413|TRIM44	ENSG00000166326|ENST00000299413|TRIM44	ENSG00000166326|ENST00000299413|TRIM44	MULTI-SECPEP	A375_MHC_IP_R2	2	537.7044067382812	2	537.30481	1072.59507	-0.6596	-0.00035441	-0.21866	-0.00011749	-0.87826	-0.00047189	537.3047207942807	100.22	1.6346	100.98	100.37	102.01	0.76278					52	31	3	0	0	0	0.27114	1	37943	37943		53.404	3.471	1	10564000			3399	7058	2189	2222	3322	3322					0.061672427767234694
AMIELVERL	9	Oxidation (M)	_AM(Oxidation (M))IELVERL_		AM(1)IELVERL		AM(50)IELVERL	0	0	1		ENSG00000166326|ENST00000299413|TRIM44	ENSG00000166326|ENST00000299413|TRIM44	ENSG00000166326|ENST00000299413|TRIM44	MULTI-MSMS	A375_MHC_IP_R1	1	545.7020263671875	2	545.302267	1088.58998	-0.49729	-0.00027117	-0.30205	-0.00016471	-0.79933	-0.00043588	545.302230598272	101.08	0.4558	101.08	100.89	101.34	0					19	8	3	0	0	0	0.10637	1	37166	37166		49.527	9.5699	1	1798200			3400	7058	2189	2223	3323	3323		359			0.049229389141146385
AMITDLVKR	9	Unmodified	_AMITDLVKR_					0	0	0			REV__PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant	REV__PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	523.7031860351562	2	523.804977	1045.5954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.17	1	122.17	121.67	122.67	0								0	0	0	0.15142	1	45435	45435		19.257	2.3147	1		+		3401	21201	2190	2224	3324	3324					0.07442662496578123
AMKRRWRRRRF	11	Unmodified	_AMKRRWRRRRF_					0	0	0			REV__nc|ENSG00000138119|Q9NZM1-5|MYOF	REV__nc|ENSG00000138119|Q9NZM1-5|MYOF	MSMS	A375_MHC_IP_R1	1	809.8727416992188	2	809.976036	1617.93752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.12	1	136.12	135.62	136.62	0								0	0	0	0.16358	1	52445	52445		0.30703	0.30703	1		+		3402	19067	2191	2225	3325	3325					0.15326787749722826
AMKRRWRRRRF	11	Unmodified	_AMKRRWRRRRF_					0	0	0			REV__nc|ENSG00000138119|Q9NZM1-5|MYOF	REV__nc|ENSG00000138119|Q9NZM1-5|MYOF	MULTI-SECPEP	A375_MHC_IP_R1	1	809.8727416992188	2	809.976036	1617.93752	-0.69828	-0.00056559	-1.1896	-0.00096351	-1.8878	-0.0015291	810.4755854981292	136.25	0.46225	136.25	136.1	136.56	0					12	8	2	0	0	0	1.0015	1	52445	52445		0.30703	0.30703	1	1077000	+		3403	19067	2191	2225	3326	3326					0.15326787749722826
AMKRRWRRRRF	11	Unmodified	_AMKRRWRRRRF_					0	0	0			REV__nc|ENSG00000138119|Q9NZM1-5|MYOF	REV__nc|ENSG00000138119|Q9NZM1-5|MYOF	MULTI-SECPEP	A375_MHC_IP_R2	2	540.384765625	3	540.319783	1617.93752	-0.77491	-0.0004187	-0.076989	-4.1599E-05	-0.8519	-0.0004603	540.3196501796618	133.3	0.30487	133.47	133.3	133.6	0.16487					9	5	2	0	0	0	1.0015	1	52455	52455		0.08335	0.08335	1	3443100	+		3404	19067	2191	2225	3327	3327					0.15326787749722826
AMKTRRPLPI	10	Unmodified	_AMKTRRPLPI_					0	0	0			REV__nc|ENSG00000014919|Q7KZN9-2|COX15	REV__nc|ENSG00000014919|Q7KZN9-2|COX15	MSMS	A375_MHC_IP_R2	2	394.7467041015625	3	394.909504	1181.70668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.7856	1	6.2025	5.7025	6.7025	0.41691								0	0	0	0.15637	1	1849	1849		0.13989	0.017027	1		+		3405	16243	2192	2226	3328	3328					0.12309721924521
AMLAVLHTV	9	Oxidation (M)	_AM(Oxidation (M))LAVLHTV_		AM(1)LAVLHTV		AM(85)LAVLHTV	0	0	1		ENSG00000123395|ENST00000336854|ATG101	ENSG00000123395|ENST00000336854|ATG101	ENSG00000123395|ENST00000336854|ATG101	MULTI-SECPEP	A375_MHC_IP_R1	1	486.1871337890625	2	485.773145	969.531738	-0.26108	-0.00012683	-0.74131	-0.00036011	-1.0024	-0.00048694	485.77284304635833	60.666	0.61061	60.666	60.21	60.821	0					25	11	3	0	0	0	0.033126	1	21803	21803		85.357	37.011	1	3549300			3406	3845	2193	2227	3329	3329		197			0.045753020594929694
AMLAVLHTV	9	Oxidation (M)	_AM(Oxidation (M))LAVLHTV_		AM(1)LAVLHTV		AM(97)LAVLHTV	0	0	1		ENSG00000123395|ENST00000336854|ATG101	ENSG00000123395|ENST00000336854|ATG101	ENSG00000123395|ENST00000336854|ATG101	MULTI-SECPEP	A375_MHC_IP_R2	2	486.1867980957031	2	485.773145	969.531738	-0.98295	-0.00047749	-0.011848	-5.7555E-06	-0.99479	-0.00048324	485.7730101430011	59.665	0.75677	60.412	59.996	60.753	0.74714					31	14	3	0	0	0	0.016207	1	22548	22548		97.075	44.806	1	3267300			3407	3845	2193	2227	3330	3330		197			0.045753020594929694
AMLAVLHTV	9	Unmodified	_AMLAVLHTV_					0	0	0		ENSG00000123395|ENST00000336854|ATG101	ENSG00000123395|ENST00000336854|ATG101	ENSG00000123395|ENST00000336854|ATG101	MULTI-MSMS	A375_MHC_IP_R2	2	477.6758728027344	2	477.775688	953.536823	-0.45098	-0.00021547	1.8197	0.00086941	1.3687	0.00065395	477.77666348470035	79.6	0.66111	80.345	79.946	80.607	0.74474					22	12	2	0	0	0	0.11296	1	30222	30222		48.346	18.121	1	5739800			3408	3845	2193	2228	3331	3331					0.058196059221018004
AMLPSITNV	9	Unmodified	_AMLPSITNV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.T2707Mfs*5|1|0.21|ENSG00000196367|chr7:98976664-98976688|CGCTGATGTTGGAGCACCAGGCTTT/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	A375_MHC_IP_R2	2	473.65728759765625	2	473.257328	944.500103	-0.47586	-0.0002252	-0.33325	-0.00015771	-0.80911	-0.00038292	473.25747528192153	101.45	0.71226	102.21	101.91	102.62	0.76428					24	13	3	0	0	0	0.27715	1	38515	38515		32.305	10.559	1	1598800			3409	9031	2194	2229	3332	3332					0.025633093055375866
AMLTDGRYYFI	11	Unmodified	_AMLTDGRYYFI_					0	0	0			REV__ENSG00000141012|ENST00000268695|GALNS	REV__ENSG00000141012|ENST00000268695|GALNS	MULTI-MSMS	A375_MHC_IP_R1	1	450.9468078613281	3	450.556796	1348.64856	-0.31723	-0.00014293	-0.28628	-0.00012899	-0.60352	-0.00027192	450.5566371914856	19.415	0.38484	19.415	19.238	19.623	0					15	7	3	0	0	0	0.73679	1	4669	4669		2.4348	0	1	4367700	+		3410	19240	2195	2230	3333	3333					-0.01182004511406376
AMLTVLHEI	9	Unmodified	_AMLTVLHEI_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	A375_MHC_IP_R1	1	514.1858520507812	2	513.786253	1025.55795	-0.60042	-0.00030849	-0.010845	-5.5718E-06	-0.61127	-0.00031406	513.786189248678	91.41	0.50581	91.41	91.098	91.604	0					16	9	2	0	0	0	0.042197	1	33598	33598		67.344	25.504	1	1702300			3411	3064	2196	2231	3334	3334					0.04619571230955444
AMLTVLHEI	9	Unmodified	_AMLTVLHEI_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	A375_MHC_IP_R2	2	513.9556884765625	2	513.786253	1025.55795	-0.65374	-0.00033588	-0.31749	-0.00016312	-0.97123	-0.000499	513.7861185709481	90.512	0.50851	91.246	90.904	91.413	0.7345					16	9	2	0	0	0	0.042197	1	34429	34429		67.344	31.217	1	2243700			3412	3064	2196	2231	3335	3335					0.04619571230955444
AMNDLLAQV	9	Unmodified	_AMNDLLAQV_					0	0	0		AP1G1|p.I270L|1|0.47|ENSG00000166747|chr16:71764657-71764657|T/A|missense_variant	AP1G1|p.I270L|1|0.47|ENSG00000166747|chr16:71764657-71764657|T/A|missense_variant	AP1G1|p.I270L|1|0.47|ENSG00000166747|chr16:71764657-71764657|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	488.1521301269531	2	487.75241	973.490267	-0.22642	-0.00011044	-0.0098698	-4.814E-06	-0.23629	-0.00011525	487.75233139160486	103.21	0.5596	103.21	102.81	103.37	0					18	10	2	0	0	0	0.012843	1	37880	37880		92.653	0	1	2369700			3413	153	2197	2232	3336	3336					0.0024612130016521405
AMNDLLAQV	9	Unmodified	_AMNDLLAQV_					0	0	0		AP1G1|p.I270L|1|0.47|ENSG00000166747|chr16:71764657-71764657|T/A|missense_variant	AP1G1|p.I270L|1|0.47|ENSG00000166747|chr16:71764657-71764657|T/A|missense_variant	AP1G1|p.I270L|1|0.47|ENSG00000166747|chr16:71764657-71764657|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	488.1524963378906	2	487.75241	973.490267	-0.57535	-0.00028063	0.54663	0.00026662	-0.028719	-1.4008E-05	487.75255698290664	102.34	0.50885	103.1	102.77	103.28	0.76428					20	9	3	0	0	0	0.01128	1	38761	38761		114.65	0	1	2659100			3414	153	2197	2232	3337	3337					0.0024612130016521405
AMNGHVPAV	9	Unmodified	_AMNGHVPAV_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	A375_MHC_IP_R1	1	448.62628173828125	2	448.226362	894.438172	-0.11296	-5.0634E-05	0.069851	3.1309E-05	-0.043113	-1.9325E-05	448.22636432503225	34.077	0.40554	34.077	33.848	34.253	0					12	7	2	0	0	0	0.098973	1	11211	11211		50.855	29.984	1	3036200			3415	4336	2198	2233	3338	3338					-0.013269973229398602
AMNGHVPAV	9	Unmodified	_AMNGHVPAV_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	A375_MHC_IP_R2	2	448.6259765625	2	448.226362	894.438172	-0.61757	-0.00027681	0.063522	2.8472E-05	-0.55405	-0.00024834	448.2263656577066	33.3	0.50927	34.053	33.789	34.298	0.75225					14	9	2	0	0	0	0.015336	1	11919	11919		89.427	55.239	1	4333800			3416	4336	2198	2233	3339	3339					-0.013269973229398602
AMNGHVPAV	9	Oxidation (M)	_AM(Oxidation (M))NGHVPAV_		AM(1)NGHVPAV		AM(78)NGHVPAV	0	0	1		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-SECPEP	A375_MHC_IP_R2	2	456.62353515625	2	456.22382	910.433086	-0.66888	-0.00030516	-0.30069	-0.00013718	-0.96957	-0.00044234	456.22371867885346	25.067	0.76352	25.711	25.414	26.178	0.64368					22	14	2	0	0	0	0.061132	1	8333	8333		77.984	41.857	1	3745200			3417	4336	2198	2234	3340	3340		226			-0.02571301185548691
AMPHSIMRID	10	Unmodified	_AMPHSIMRID_					0	0	0		ENSG00000138107|ENST00000369905|ACTR1A;ENST00000480947.1_1_10:104243895-104247966:-|nuORF	ENSG00000138107|ENST00000369905|ACTR1A	ENSG00000138107|ENST00000369905|ACTR1A	MULTI-SECPEP	A375_MHC_IP_R1	1	390.12689208984375	3	390.863454	1169.56853	0.25792	0.00010081	0.25448	9.9469E-05	0.5124	0.00020028	390.8639272758107	37.67	0.61201	37.67	37.301	37.913	0					15	11	2	0	0	0	0.91909	1	12785	12785		8.4443	0	1	1203700			3418	4958	2199	2235	3341	3341					-0.009467693862461601
AMRKLPKE	8	Unmodified	_AMRKLPKE_					0	0	0		ENST00000261534.8_1_14:77743417-77743654:-|nuORF	ENST00000261534.8_1_14:77743417-77743654:-|nuORF	ENST00000261534.8_1_14:77743417-77743654:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	973.6329345703125	1	972.565898	971.558621	0.14413	0.00014018	-2.5789	-0.0025081	-2.4347	-0.0023679	972.5623445033684	141.44	0.25671	141.48	141.37	141.63	0.04216					5	4	2	0	0	0	0.7779	1	55335	55335		2.5775	0.27475	1	463700			3419	10284	2200	2236	3342	3342					0.0717041067067612
AMSMALHFL	9	Unmodified	_AMSMALHFL_					0	0	0		nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3;ENST00000570773.5_1_17:3828718-3833746:-|nuORF;ENST00000571245.5_1_17:3831639-3833719:-|nuORF	nc|ENSG00000074370|Q93084-4|ATP2A3	nc|ENSG00000074370|Q93084-4|ATP2A3	MULTI-SECPEP	A375_MHC_IP_R2	2	510.205078125	2	510.753898	1019.49324	-0.89773	-0.00045852	-1.0708	-0.00054691	-1.9685	-0.0010054	510.75218604435986	65.561	0.25482	66.299	66.069	66.324	0.73811					5	4	2	0	0	0	0.69504	1	24835	24835		12.532	4.6214	1	442920			3420	1583	2201	2237	3343	3343					-0.015723268466899754
AMSSKFFLV	9	Unmodified	_AMSSKFFLV_					0	0	0		ENST00000497817.1_1_3:55513315-55514913:-|nuORF;nc|ENSG00000114251|P41221-2|WNT5A;ENSG00000114251|ENST00000264634|WNT5A	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	515.6460571289062	2	515.275521	1028.53649	-0.44077	-0.00022712	0.32122	0.00016552	-0.11955	-6.1602E-05	515.27569251993	93.487	1.2179	93.487	93.125	94.343	0					62	23	4	0	0	0	0.028087	1	34368	34368		106.94	65.101	1	43998000			3421	3205	2202	2238	3344	3344					0.02336186202251156
AMSSKFFLV	9	Unmodified	_AMSSKFFLV_					0	0	0		ENST00000497817.1_1_3:55513315-55514913:-|nuORF;nc|ENSG00000114251|P41221-2|WNT5A;ENSG00000114251|ENST00000264634|WNT5A	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	515.6749877929688	2	515.275521	1028.53649	-0.68651	-0.00035374	-0.23145	-0.00011926	-0.91797	-0.00047301	515.2754303871588	92.577	1.1663	93.316	92.886	94.053	0.73902					60	22	5	0	0	0	0.061442	1	35140	35140		82.529	48.128	1	49772000			3422	3205	2202	2238	3345	3345					0.02336186202251156
AMSSKFFLV	9	Oxidation (M)	_AM(Oxidation (M))SSKFFLV_		AM(1)SSKFFLV		AM(80)SSKFFLV	0	0	1		ENST00000497817.1_1_3:55513315-55514913:-|nuORF;nc|ENSG00000114251|P41221-2|WNT5A;ENSG00000114251|ENST00000264634|WNT5A	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	523.673095703125	2	523.272978	1044.5314	-0.40029	-0.00020946	-0.10888	-5.6974E-05	-0.50917	-0.00026643	523.2729974617118	93.459	1.8279	93.459	92.463	94.291	0					51	35	2	0	0	0	0.074405	1	34374	34374		79.596	41.445	1	9390200			3423	3205	2202	2239	3346	3346		152			0.01091882339642325
AMSSKFFLV	9	Oxidation (M)	_AM(Oxidation (M))SSKFFLV_		AM(1)SSKFFLV		AM(73)SSKFFLV	0	0	1		ENST00000497817.1_1_3:55513315-55514913:-|nuORF;nc|ENSG00000114251|P41221-2|WNT5A;ENSG00000114251|ENST00000264634|WNT5A	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	523.6727905273438	2	523.272978	1044.5314	-0.39951	-0.00020905	-0.11589	-6.0645E-05	-0.5154	-0.0002697	523.2729424114757	81.804	3.2908	81.804	81.151	84.442	0					146	64	3	0	0	0	0.10362	1	30010	30010		72.968	40.851	1	13968000			3424	3205	2202	2239	3347	3347		152			0.01091882339642325
AMSSKFFLV	9	Oxidation (M)	_AM(Oxidation (M))SSKFFLV_		AM(1)SSKFFLV		AM(73)SSKFFLV	0	0	1		ENST00000497817.1_1_3:55513315-55514913:-|nuORF;nc|ENSG00000114251|P41221-2|WNT5A;ENSG00000114251|ENST00000264634|WNT5A	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	523.6723022460938	2	523.272978	1044.5314	-0.6279	-0.00032856	-0.2872	-0.00015029	-0.9151	-0.00047885	523.2728534496058	81.314	2.9421	82.058	80.96	83.903	0.74463					134	57	3	0	0	0	0.10362	1	30915	30915		72.968	40.851	1	11938000			3425	3205	2202	2239	3348	3348		152			0.01091882339642325
AMSSKFFLV	9	Oxidation (M)	_AM(Oxidation (M))SSKFFLV_		AM(1)SSKFFLV		AM(60)SSKFFLV	0	0	1		ENST00000497817.1_1_3:55513315-55514913:-|nuORF;nc|ENSG00000114251|P41221-2|WNT5A;ENSG00000114251|ENST00000264634|WNT5A	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	523.6726684570312	2	523.272978	1044.5314	-0.45189	-0.00023646	-0.42981	-0.00022491	-0.8817	-0.00046137	523.2727899718108	79.176	1.0675	79.921	79.489	80.556	0.74474					57	20	6	0	0	0	0.16764	1	29956	29956		60.074	27.957	1	66617000			3426	3205	2202	2239	3349	3349		152			0.01091882339642325
AMSSKFFLV	9	Oxidation (M)	_AM(Oxidation (M))SSKFFLV_					0	0	1		ENST00000497817.1_1_3:55513315-55514913:-|nuORF;nc|ENSG00000114251|P41221-2|WNT5A;ENSG00000114251|ENST00000264634|WNT5A	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	523.272978	1044.5314	-0.57384	-0.00030028	0.11504	6.0199E-05	-0.4588	-0.00024008	523.2730503664878	80.146	1.4236	80.146	79.728	81.151	0	0.11249	0.00029483	NaN	60.074	62	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63104000			3427	3205	2202	2239				152			0.01091882339642325
AMSSKFFLV	9	Oxidation (M)	_AM(Oxidation (M))SSKFFLV_					0	0	1		ENST00000497817.1_1_3:55513315-55514913:-|nuORF;nc|ENSG00000114251|P41221-2|WNT5A;ENSG00000114251|ENST00000264634|WNT5A	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	523.272978	1044.5314	-0.47126	-0.0002466	-0.88906	-0.00046522	-1.3603	-0.00071182	523.2727929808151	92.639	2.2298	93.378	92.432	94.661	0.73902	-0.040281	-0.00024614	NaN	79.596	88	43	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12318000			3428	3205	2202	2239				152			0.01091882339642325
AMTKDNNLL	9	Unmodified	_AMTKDNNLL_					0	0	0		ENSG00000173110|ENST00000309758|HSPA6;ENST00000445535.1_1_1:161576981-161578004:+|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000173110|ENST00000309758|HSPA6;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	A375_MHC_IP_R1	1	510.66302490234375	2	510.263142	1018.51173	-0.30228	-0.00015424	-0.18345	-9.3609E-05	-0.48573	-0.00024785	510.2630334052145	39.213	0.71033	39.213	38.882	39.592	0					20	13	2	0	0	0	0.054426	1	13418	13418		62.573	9.8796	1	3731100			3429	2906;9437;7769;9438	2203	2240	3350	3350					0.0032150632887351094
AMTKDNNLL	9	Unmodified	_AMTKDNNLL_					0	0	0		ENSG00000173110|ENST00000309758|HSPA6;ENST00000445535.1_1_1:161576981-161578004:+|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000173110|ENST00000309758|HSPA6;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8	MULTI-SECPEP	A375_MHC_IP_R2	2	510.662841796875	2	510.263142	1018.51173	-1.1114	-0.00056709	0.16348	8.3418E-05	-0.94789	-0.00048367	510.26331173572385	38.333	0.45746	39.108	38.843	39.3	0.77451					18	8	3	0	0	0	0.074405	1	14099	14099		70.332	12.861	1	5900800			3430	2906;9437;7769;9438	2203	2240	3351	3351					0.0032150632887351094
AMTQLLAGV	9	Oxidation (M)	_AM(Oxidation (M))TQLLAGV_		AM(1)TQLLAGV		AM(65)TQLLAGV	0	0	1		nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC	nc|ENSG00000041982|P24821-6|TNC	nc|ENSG00000041982|P24821-6|TNC	MULTI-MSMS	A375_MHC_IP_R1	1	460.6493835449219	2	460.249503	918.484453	-0.076446	-3.5184E-05	-0.26094	-0.0001201	-0.33739	-0.00015528	460.2494168666605	78.529	0.70811	78.529	78.15	78.859	0					33	13	4	0	0	0	0.047602	1	28589	28589		65.235	10.461	1	22224000			3431	1171	2204	2241	3352	3352		20			0.02195022788521328
AMTQLLAGV	9	Unmodified	_AMTQLLAGV_					0	0	0		nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC	nc|ENSG00000041982|P24821-6|TNC	nc|ENSG00000041982|P24821-6|TNC	MULTI-MSMS	A375_MHC_IP_R1	1	452.65130615234375	2	452.252046	902.489538	-0.16031	-7.2501E-05	-0.0086924	-3.9312E-06	-0.169	-7.6433E-05	452.25195495590145	103.95	0.8655	103.95	103.52	104.39	0					33	16	3	0	0	0	0.010037	1	38159	38159		96.285	21.862	1	6842000			3432	1171	2204	2242	3353	3353					0.03439326651130159
AMTQLLAGV	9	Unmodified	_AMTQLLAGV_					0	0	0		nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC	nc|ENSG00000041982|P24821-6|TNC	nc|ENSG00000041982|P24821-6|TNC	MULTI-MSMS	A375_MHC_IP_R2	2	452.65167236328125	2	452.252046	902.489538	-0.24324	-0.00011	-0.79317	-0.00035871	-1.0364	-0.00046872	452.25166708516275	103.05	0.71288	103.81	103.53	104.24	0.76428					32	13	3	0	0	0	0.021889	1	39000	39000		81.89	14.546	1	9612200			3433	1171	2204	2242	3354	3354					0.03439326651130159
AMVMGTHTY	9	Unmodified	_AMVMGTHTY_					0	0	0		nc|ENSG00000166090|Q9H293-2|IL25;ENSG00000166090|ENST00000329715|IL25	nc|ENSG00000166090|Q9H293-2|IL25	nc|ENSG00000166090|Q9H293-2|IL25	MULTI-MSMS	A375_MHC_IP_R2	2	505.7297058105469	2	505.725338	1009.43612	-0.5491	-0.00027769	0.36811	0.00018616	-0.18098	-9.1528E-05	505.72545825565214	85.542	0.8132	86.278	85.933	86.746	0.73602					30	15	3	0	0	0	0.46038	1	32442	32442		21.747	4.8044	1	6762700			3434	7022	2205	2243	3355	3355					-0.06821794123061409
AMWEHPITA	9	Oxidation (M)	_AM(Oxidation (M))WEHPITA_		AM(1)WEHPITA		AM(96)WEHPITA	0	0	1		nc|ENSG00000138621|Q96CD2-2|PPCDC;ENSG00000138621|ENST00000342932|PPCDC	nc|ENSG00000138621|Q96CD2-2|PPCDC	nc|ENSG00000138621|Q96CD2-2|PPCDC	MULTI-MSMS	A375_MHC_IP_R1	1	536.6497192382812	2	536.250034	1070.48552	-0.23224	-0.00012454	0.5352	0.000287	0.30296	0.00016246	536.2501995961127	44.719	1.118	44.719	44.216	45.334	0					41	21	3	0	0	0	0.010037	1	15561	15561		96.285	72.264	1	6776700			3435	5009	2206	2244	3356	3356		266			-0.04690762842596996
AMWEHPITA	9	Oxidation (M)	_AM(Oxidation (M))WEHPITA_		AM(1)WEHPITA		AM(85)WEHPITA	0	0	1		nc|ENSG00000138621|Q96CD2-2|PPCDC;ENSG00000138621|ENST00000342932|PPCDC	nc|ENSG00000138621|Q96CD2-2|PPCDC	nc|ENSG00000138621|Q96CD2-2|PPCDC	MULTI-SECPEP	A375_MHC_IP_R2	2	536.6494750976562	2	536.250034	1070.48552	-0.67747	-0.00036329	0.36678	0.00019669	-0.31068	-0.0001666	536.2501405921579	43.924	1.8212	44.693	43.417	45.239	0.76909					53	35	3	0	0	0	0.021422	1	16333	16333		85.272	61.251	1	7469800			3436	5009	2206	2244	3357	3357		266			-0.04690762842596996
AMWEHPITA	9	Unmodified	_AMWEHPITA_					0	0	0		nc|ENSG00000138621|Q96CD2-2|PPCDC;ENSG00000138621|ENST00000342932|PPCDC	nc|ENSG00000138621|Q96CD2-2|PPCDC	nc|ENSG00000138621|Q96CD2-2|PPCDC	MULTI-SECPEP	A375_MHC_IP_R1	1	528.6525268554688	2	528.252577	1054.4906	-0.60259	-0.00031832	0.5424	0.00028652	-0.060194	-3.1798E-05	528.2525670535537	58.817	0.56049	58.817	58.531	59.092	0					26	10	4	0	0	0	0.021422	1	21117	21117		85.272	72.23	1	5858700			3437	5009	2206	2245	3358	3358					-0.03446458979988165
AMWEHPITA	9	Unmodified	_AMWEHPITA_					0	0	0		nc|ENSG00000138621|Q96CD2-2|PPCDC;ENSG00000138621|ENST00000342932|PPCDC	nc|ENSG00000138621|Q96CD2-2|PPCDC	nc|ENSG00000138621|Q96CD2-2|PPCDC	MULTI-SECPEP	A375_MHC_IP_R2	2	528.6524047851562	2	528.252577	1054.4906	-0.78344	-0.00041385	-0.58254	-0.00030773	-1.366	-0.00072158	528.2524003379476	58.009	0.50265	58.758	58.477	58.98	0.74894					22	9	3	0	0	0	0.011358	1	21918	21918		120.45	95.051	1	6543600			3438	5009	2206	2245	3359	3359					-0.03446458979988165
AMYAVSWCF	9	Unmodified	_AMYAVSWCF_					0	0	0		ENST00000531346.1_1_11:120196007-120201221:+|nuORF;ENSG00000181264|ENST00000375095|TLCD5;nc|ENSG00000181264|Q6ZRR5-3|TLCD5	ENST00000531346.1_1_11:120196007-120201221:+|nuORF	ENST00000531346.1_1_11:120196007-120201221:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	539.1295166015625	2	539.230256	1076.44596	-0.73806	-0.00039798	0.61353	0.00033083	-0.12453	-6.715E-05	539.2306138267058	76.682	1.016	76.682	76.117	77.133	0					36	19	3	0	0	0	0.6898	1	27851	27851		7.9102	0	1	2766500			3439	8341	2207	2246	3360	3360					-0.08920606117681018
AMYGNFML	8	Unmodified	_AMYGNFML_					0	0	0		ENSG00000180071|ENST00000399703|ANKRD18A	ENSG00000180071|ENST00000399703|ANKRD18A	ENSG00000180071|ENST00000399703|ANKRD18A	MSMS	A375_MHC_IP_R1	1	473.6934814453125	2	473.711699	945.408845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.53	1	101.53	101.03	102.03	0								0	0	0	0.16876	1	37312	37312		11.114	2.5212	1				3440	8276	2208	2247	3361	3361					-0.06604277663427638
AMYPDQVQL	9	Oxidation (M)	_AM(Oxidation (M))YPDQVQL_		AM(1)YPDQVQL		AM(46)YPDQVQL	0	0	1		ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	MULTI-SECPEP	A375_MHC_IP_R1	1	541.1547241210938	2	540.755149	1079.49575	-0.45675	-0.00024699	-0.072007	-3.8938E-05	-0.52876	-0.00028593	540.755028854547	71.486	0.65764	71.486	71.057	71.715	0					24	12	3	0	0	0	0.3213	1	25922	25922		46.021	20.622	1	4654800			3441	4646	2209	2248	3362	3362		244			-0.040821999080208116
AMYPDQVQL	9	Oxidation (M)	_AM(Oxidation (M))YPDQVQL_		AM(1)YPDQVQL		AM(58)YPDQVQL	0	0	1		ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	MULTI-MSMS	A375_MHC_IP_R2	2	541.1549682617188	2	540.755149	1079.49575	-0.90544	-0.00048962	0.11611	6.2784E-05	-0.78934	-0.00042684	540.7552003800489	70.88	0.75941	71.614	71.149	71.908	0.73421					24	14	2	0	0	0	0.066859	1	26812	26812		57.722	31.454	1	4232300			3442	4646	2209	2248	3363	3363		244			-0.040821999080208116
ANAFRRIL	8	Unmodified	_ANAFRRIL_					0	0	0		ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000512472.5_1_6:43484832-43487226:+|nuORF	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	480.116455078125	2	480.790518	959.566484	-0.65111	-0.00031305	-0.50905	-0.00024475	-1.1602	-0.0005578	480.79013763621	41.736	0.35966	41.736	41.521	41.88	0					9	6	2	0	0	0	0.94479	1	14367	14367		8.5933	8.5933	1	956280			3443	7601	2210	2249	3364	3364					0.08508305982479669
ANCEDSSCC	9	Unmodified	_ANCEDSSCC_					0	0	0		ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	MSMS	A375_MHC_IP_R1	1	466.14776611328125	2	466.133153	930.251752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.739	1	26.739	26.239	27.239	0								0	0	0	0.15486	1	8012	8012		4.756	2.9118	1				3444	6155	2211	2250	3365	3365					-0.21616350335921197
ANCLKTMRY	9	Unmodified	_ANCLKTMRY_					0	0	0		ENST00000528944.5_1_1:145816715-145818810:-|nuORF	ENST00000528944.5_1_1:145816715-145818810:-|nuORF	ENST00000528944.5_1_1:145816715-145818810:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	552.72705078125	2	550.272986	1098.53142	-0.49091	-0.00027013	-1.3505	-0.00074313	-1.8414	-0.0010133	550.2722429844894	79.345	1.4301	79.345	78.859	80.289	0					117	27	6	0	0	0	0.67332	1	28956	28956		9.3831	1.473	1	53848000			3445	13123	2212	2251	3366	3366					-0.013904409320048217
ANDNIDEILF	10	Unmodified	_ANDNIDEILF_					0	0	0			REV__ENSG00000099715|ENST00000698851|PCDH11Y	REV__ENSG00000099715|ENST00000698851|PCDH11Y	MULTI-MSMS	A375_MHC_IP_R1	1	582.229736328125	2	582.282586	1162.55062	0.035107	2.0442E-05	0.0024135	1.4053E-06	0.03752	2.1847E-05	582.2826034597877	108.54	0.76109	108.54	108.15	108.92	0					38	14	4	0	0	0	0.57505	1	39717	39717		22.736	3.3743	1	5649800	+		3446	17021	2213	2252	3367	3367					-0.024154898357664933
ANECDLME	8	Unmodified	_ANECDLME_					0	0	0		ENSG00000123892|ENST00000243662|RAB38	ENSG00000123892|ENST00000243662|RAB38	ENSG00000123892|ENST00000243662|RAB38	MSMS	A375_MHC_IP_R2	2	462.6706237792969	2	462.675511	923.336468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.269	1	24.912	24.412	25.412	0.64368								0	0	0	0.16876	1	7946	7946		2.5775	0	1				3447	3861	2214	2253	3368	3368					-0.12826656527658997
ANELVEEEY	9	Unmodified	_ANELVEEEY_					0	0	0			REV__ENSG00000047936|ENST00000368507|ROS1	REV__ENSG00000047936|ENST00000368507|ROS1	MULTI-MSMS	A375_MHC_IP_R1	1	549.1761474609375	2	548.245669	1094.47678	-0.4138	-0.00022687	3.6806	0.0020179	3.2668	0.001791	548.2461036639959	49.943	0.91951	49.943	49.642	50.561	0					47	17	4	0	0	0	0.38603	1	17772	17772		25.399	2.663	1	4539200	+		3448	16367	2215	2254	3369	3369					-0.06667457998082682
ANEQELPFY	9	Unmodified	_ANEQELPFY_					0	0	0			REV__ENST00000564844.1_1_16:87426873-87433248:+|nuORF	REV__ENST00000564844.1_1_16:87426873-87433248:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	556.71142578125	2	555.758746	1109.50294	-0.63942	-0.00035536	-0.22063	-0.00012262	-0.86005	-0.00047798	555.7585567845632	94.239	0.6581	94.239	93.89	94.548	0					27	12	3	0	0	0	0.63811	1	34732	34732		12.532	3.1484	1	4723100	+		3449	26221	2216	2255	3370	3370					-0.04743144035955993
ANEQVQEPV	9	Unmodified	_ANEQVQEPV_					0	0	0			REV__ENST00000540114.5_3_12:27817320-27817371:+|nuORF	REV__ENST00000540114.5_3_12:27817320-27817371:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	507.8250427246094	2	507.248546	1012.48254	-0.57638	-0.00029237	-0.47727	-0.00024209	-1.0537	-0.00053446	507.2482297420021	86.602	1.0135	86.602	86.172	87.186	0					46	19	4	0	0	0	0.63811	1	31828	31828		12.532	0.89125	1	25166000	+		3450	25929	2217	2256	3371	3371					-0.02320314695759862
ANEQVQEPV	9	Unmodified	_ANEQVQEPV_					0	0	0			REV__ENST00000540114.5_3_12:27817320-27817371:+|nuORF	REV__ENST00000540114.5_3_12:27817320-27817371:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.64764404296875	2	507.248546	1012.48254	-0.57638	-0.00029237	-0.47727	-0.00024209	-1.0537	-0.00053446	507.2482297420021	86.602	1.0135	86.602	86.172	87.186	0					46	19	4	0	0	0	0.60012	1	31673	31673		12.532	0.89125	1	25166000	+		3451	25929	2217	2256	3372	3372					-0.02320314695759862
ANGEIGFLSN	10	Unmodified	_ANGEIGFLSN_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.N3444Tfs*24|1|0.36|ENSG00000164199|chr5:90728837-90728837|A/-|frameshift_variant;nc|ENSG00000164199|Q8WXG9-3|ADGRV1;ENST00000504142.2_2_5:89924394-89949789:+|nuORF;nc|ENSG00000164199|Q8WXG9-4|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MSMS	A375_MHC_IP_R1	1	511.1715393066406	2	511.251089	1020.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.2	1	116.2	115.7	116.7	0								0	0	0	0.089777	1	42622	42622		45.7	1.8413	1				3452	6801	2218	2257	3373	3373					-0.021800108331376578
ANGLEDIKNI	10	Unmodified	_ANGLEDIKNI_					0	0	0		tr|U7T159|U7T159_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00702PE=4SV=1	tr|U7T159|U7T159_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00702PE=4SV=1	tr|U7T159|U7T159_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00702PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	543.1610107421875	2	543.793121	1085.57169	-0.63386	-0.00034469	0.058463	3.1792E-05	-0.5754	-0.0003129	543.7931462619132	43.682	0.45373	44.451	44.177	44.631	0.7691					14	8	2	0	0	0	0.75488	1	16189	16189		18.373	0	1	1647200			3453	29901	2219	2258	3374	3374					0.032325202637593975
ANIFDEHQ	8	Unmodified	_ANIFDEHQ_					0	0	0			REV__ENSG00000118491|ENST00000237275|ZC2HC1B	REV__ENSG00000118491|ENST00000237275|ZC2HC1B	MULTI-MSMS	A375_MHC_IP_R2	2	487.621826171875	2	487.222331	972.430109	-0.82535	-0.00040213	0.11687	5.6943E-05	-0.70848	-0.00034519	487.2223450443172	38.006	0.46294	38.781	38.534	38.997	0.77451					15	8	2	0	0	0	0.66714	1	13948	13948		42.095	6.0504	1	7893300	+		3454	18041	2220	2259	3375	3375					-0.05720853038712903
ANLPLFLMG	9	Unmodified	_ANLPLFLMG_					0	0	0		ENST00000484981.1_1_3:58151207-58156486:+|nuORF	ENST00000484981.1_1_3:58151207-58156486:+|nuORF	ENST00000484981.1_1_3:58151207-58156486:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	487.622314453125	2	488.270238	974.525924	0.15185	7.4142E-05	1.8265	0.00089184	1.9784	0.00096598	488.27084837738187	38.907	0.40576	38.907	38.679	39.085	0					9	7	2	0	0	0	0.71541	1	13180	13180		16.942	2.3606	1	1782700			3455	12569	2221	2260	3376	3376					0.03764203547814304
ANNFEYSDPV	10	Unmodified	_ANNFEYSDPV_					0	0	0		PGM1|p.D472N|1|0.56|ENSG00000079739|chr1:63651802-63651802|G/A|missense_variant	PGM1|p.D472N|1|0.56|ENSG00000079739|chr1:63651802-63651802|G/A|missense_variant	PGM1|p.D472N|1|0.56|ENSG00000079739|chr1:63651802-63651802|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	579.6737060546875	2	578.251286	1154.48802	-0.16001	-9.2529E-05	-1.0416	-0.0006023	-1.2016	-0.00069483	578.2508104581054	77.631	0.71155	77.631	77.286	77.998	0					40	13	4	0	0	0	0.70496	1	28440	28440		10.074	2.7847	1	11059000			3456	15162	2222	2261	3377	3377					-0.08304635903982671
ANPHSFVF	8	Unmodified	_ANPHSFVF_					0	0	0		nc|ENSG00000130810|Q9NQ55-3|PPAN;nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN	nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-3|PPAN	MULTI-SECPEP	A375_MHC_IP_R1	1	460.1267395019531	2	459.727052	917.439552	-0.24931	-0.00011461	0.23739	0.00010913	-0.011916	-5.4783E-06	459.72701359905005	60.519	0.55964	60.519	60.261	60.821	0					16	10	2	0	0	0	0.60242	1	21801	21801		37.974	19.839	1	1849800			3457	14602	2223	2262	3378	3378					-0.02247039962526287
ANQGERIVW	9	Unmodified	_ANQGERIVW_					0	0	0			REV__nc|ENSG00000029534|P16157-14|ANK1	REV__nc|ENSG00000029534|P16157-14|ANK1	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1802978515625	2	536.780348	1071.54614	-0.64583	-0.00034667	0.69132	0.00037109	0.045486	2.4416E-05	536.7806005439758	52.152	0.55812	52.152	51.829	52.387	0					21	10	4	0	0	0	0.47368	1	18564	18564		20.454	11.071	1	3623300	+		3458	16297	2224	2263	3379	3379					0.01323090531991511
ANRDELKRI	9	Unmodified	_ANRDELKRI_					0	0	0			REV__nc|ENSG00000188385|Q5VZ66|JAKMIP3	REV__nc|ENSG00000188385|Q5VZ66|JAKMIP3	MULTI-SECPEP	A375_MHC_IP_R2	2	372.6163024902344	3	372.215761	1113.62546	0.18835	7.0106E-05	-0.041868	-1.5584E-05	0.14648	5.4522E-05	372.2159012667657	18.855	0.52214	19.458	19.413	19.935	0.60308					31	12	5	0	0	0	0.24548	1	5630	5630		47.594	24.936	1	667300000	+		3459	22089	2225	2264	3380	3380					0.07318737486116333
ANSDRKRHSPP	11	Unmodified	_ANSDRKRHSPP_					0	0	0			REV__PELP1|p.G513R|1|0.27|ENSG00000141456|chr17:4674555-4674555|C/T|missense_variant	REV__PELP1|p.G513R|1|0.27|ENSG00000141456|chr17:4674555-4674555|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	632.9923095703125	2	632.828892	1263.64323	-0.70293	-0.00044483	2.089	0.001322	1.3861	0.00087714	632.8305551006031	40.164	0.20425	40.164	40.05	40.254	0					6	3	2	0	0	0	0.92455	1	13748	13748		7.609	4.8738	1	829080	+		3460	27765	2226	2265	3381	3381					0.021954527409889124
ANTIQRKL	8	Unmodified	_ANTIQRKL_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.R7429Ifs*19|1|0.07|ENSG00000131018|chr6:152214911-152214966|TCTTTCTGTAGTCTGAGAGGAGATCAGAGACCAATGGCGGTTCAGATTCTGCATTC/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-10|SYNE1;nc|ENSG00000131018|Q8NF91-6|SYNE1;nc|ENSG00000131018|Q8NF91-5|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	A375_MHC_IP_R1	1	472.40155029296875	2	472.287808	942.561064	-0.35153	-0.00016603	0.18699	8.8315E-05	-0.16454	-7.7711E-05	472.28792532145525	37.648	0.30738	37.648	37.454	37.761	0					7	5	2	0	0	0	0.94479	1	12718	12718		8.5933	0	1	1192600			3461	4300	2227	2266	3382	3382					0.08748582399982752
ANTKNQKI	8	Unmodified	_ANTKNQKI_					0	0	0		ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-MSMS	A375_MHC_IP_R1	1	459.6657409667969	2	458.764166	915.513779	-0.62635	-0.00028735	0.66816	0.00030653	0.041808	1.918E-05	458.76423460348144	29.753	0.29227	29.753	29.607	29.899	0					9	5	2	0	0	0	0.74945	1	9383	9383		20.454	2.3186	1	8598100			3462	1799	2228	2267	3383	3383					0.052643031289903774
ANVGCCPPGCV	11	Unmodified	_ANVGCCPPGCV_					0	0	0			REV__ENST00000486440.5_1_7:100203133-100203232:+|nuORF	REV__ENST00000486440.5_1_7:100203133-100203232:+|nuORF	MSMS	A375_MHC_IP_R2	2	510.2110595703125	2	510.208998	1018.40344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.17	1	45.935	45.435	46.435	0.76519								0	0	0	0.16179	1	16879	16879		9.3831	0.035688	1		+		3463	25321	2229	2268	3384	3384					-0.10502324517563011
ANVLEHSVY	9	Unmodified	_ANVLEHSVY_					0	0	0			REV__ENSG00000183977|ENST00000389050|PP2D1	REV__ENSG00000183977|ENST00000389050|PP2D1	MULTI-MSMS	A375_MHC_IP_R1	1	517.6727905273438	2	516.261456	1030.50836	-0.66226	-0.0003419	0.33045	0.0001706	-0.33181	-0.0001713	516.2614577255827	53.171	1.0647	53.171	52.592	53.656	0					56	20	5	0	0	0	0.46038	1	18818	18818		21.747	1.293	1	10813000	+		3464	21791	2230	2269	3385	3385					-0.005674204534898308
ANYYDDSVY	9	Unmodified	_ANYYDDSVY_					0	0	0			REV__tr|U7SWW5|U7SWW5_FUSNUcysteine-S-conjugatebeta-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01196PE=3SV=1	REV__tr|U7SWW5|U7SWW5_FUSNUcysteine-S-conjugatebeta-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01196PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	555.6248168945312	2	555.224736	1108.43492	-0.78842	-0.00043775	0.74934	0.00041605	-0.039075	-2.1696E-05	555.2252008071076	64.873	0.91467	65.611	65.206	66.121	0.73811					37	17	3	0	0	0	0.58047	1	24537	24537		15.847	1.0089	1	4487000	+		3465	28612	2231	2270	3386	3386					-0.1149601368661024
ANYYDDSVY	9	Unmodified	_ANYYDDSVY_					0	0	0			REV__tr|U7SWW5|U7SWW5_FUSNUcysteine-S-conjugatebeta-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01196PE=3SV=1	REV__tr|U7SWW5|U7SWW5_FUSNUcysteine-S-conjugatebeta-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01196PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	555.224736	1108.43492	-0.67163	-0.00037291	0.8513	0.00047266	0.17967	9.9756E-05	555.2253602565827	65.506	0.91643	65.506	65.055	65.972	0	-0.052797	5.7702E-05	NaN	15.847	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5078400	+		3466	28612	2231	2270							-0.1149601368661024
ANYYTREV	8	Unmodified	_ANYYTREV_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	A375_MHC_IP_R1	1	508.6454162597656	2	508.245806	1014.47706	-0.87412	-0.00044427	0.12503	6.3548E-05	-0.74909	-0.00038072	508.2457750990152	29.24	0.35523	29.24	29.098	29.453	0					10	6	2	0	0	0	0.054387	1	9145	9145		103.35	59.495	1	4733800			3467	3317	2232	2271	3387	3387					-0.029599934875705003
ANYYTREV	8	Unmodified	_ANYYTREV_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MSMS	A375_MHC_IP_R2	2	508.6454162597656	2	508.245806	1014.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.628	1	29.326	28.826	29.826	0.69872								0	0	0	0.050881	1	9911	9911		74.929	24.996	1				3468	3317	2232	2271	3388	3388					-0.029599934875705003
APAAAADKQ	9	Unmodified	_APAAAADKQ_					0	0	0			REV__ENSG00000185585|ENST00000373580|OLFML2A	REV__ENSG00000185585|ENST00000373580|OLFML2A	MULTI-SECPEP	A375_MHC_IP_R1	1	842.8992919921875	1	842.436658	841.429381	-0.51689	-0.00043544	-2.5433	-0.0021426	-3.0602	-0.002578	842.4306851915753	129.44	0.25301	129.44	129.3	129.55	0					6	4	2	0	0	0	0.64653	1	49770	49770		20.871	0	1	4177500	+		3469	21901	2233	2272	3389	3389					0.0023235231222997754
APAAIPIAVRL	11	Unmodified	_APAAIPIAVRL_					0	0	0			REV__ENST00000262738.7_1_22:46932303-46932903:-|nuORF	REV__ENST00000262738.7_1_22:46932303-46932903:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	546.1744995117188	2	546.350409	1090.68626	-0.67496	-0.00036876	0.96863	0.00052921	0.29367	0.00016045	546.3503484169465	84.743	0.96465	85.479	85.12	86.085	0.73602					24	18	2	0	0	0	0.97871	1	32114	32114		6.7232	3.4419	1	834300	+		3470	23213	2234	2273	3390	3390					0.14454874536363604
APAAKKAL	8	Unmodified	_APAAKKAL_					0	0	0			REV__ENSG00000121892|ENST00000303538|PDS5A	REV__ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	A375_MHC_IP_R2	2	385.6501770019531	2	385.250163	768.485774	-0.12478	-4.8072E-05	0.36821	0.00014185	0.24342	9.3779E-05	385.25023469312276	48.458	0.50612	49.215	49.03	49.536	0.75737					12	9	2	0	0	0	0.77515	1	18227	18227		12.532	3.9383	1	1807900	+		3471	18175	2235	2274	3391	3391					0.09227024939559669
APAAPRVRLS	10	Unmodified	_APAAPRVRLS_					0	0	0			REV__ENST00000400087.7_1_21:27102104-27107872:-|nuORF	REV__ENST00000400087.7_1_21:27102104-27107872:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	519.9855346679688	2	519.314358	1036.61416	-0.68349	-0.00035495	0.176	9.1398E-05	-0.50749	-0.00026355	519.3152932260083	82.88	0.40082	83.62	83.294	83.694	0.73962					10	7	2	0	0	0	0.9269	1	31432	31432		3.5965	0	1	729020	+		3472	24398	2236	2275	3392	3392					0.09731960182671173
APACFCSAPCF	11	Unmodified	_APACFCSAPCF_					0	0	0			REV__ENST00000592811.5_1_19:45976300-45976501:+|nuORF	REV__ENST00000592811.5_1_19:45976300-45976501:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	558.9446411132812	2	558.719198	1115.42384	-0.35928	-0.00020073	-4.4279	-0.002474	-4.7872	-0.0026747	559.2175857132393	82.558	0.2032	82.558	82.418	82.622	0					5	3	2	0	0	0	0.99526	1	30146	30146		3.5965	3.5965	1	2645000	+		3473	26453	2237	2276	3393	3393					-0.12925153857759142
APAELQIRPD	10	Unmodified	_APAELQIRPD_					0	0	0			REV__ENST00000322315.5_1_19:3590178-3593283:+|nuORF	REV__ENST00000322315.5_1_19:3590178-3593283:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	370.6135559082031	3	370.536501	1108.58767	0.22678	8.403E-05	-0.2103	-7.7925E-05	0.016474	6.1043E-06	370.53641421523514	46.564	0.504	46.564	46.295	46.799	0					19	9	3	0	0	0	0.94311	1	16278	16278		0.15932	0	1	2320900	+		3474	23578	2238	2277	3394	3394					0.03772226500677789
APAEYNLVY	9	Unmodified	_APAEYNLVY_					0	0	0			REV__ENST00000524965.5_1_8:145540219-145541001:-|nuORF	REV__ENST00000524965.5_1_8:145540219-145541001:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	520.2546997070312	2	520.258382	1038.50221	-0.35334	-0.00018383	1.787	0.00092972	1.4337	0.00074589	520.2571098254064	82.47	0.35618	82.47	82.316	82.672	0					9	6	2	0	0	0	0.71977	1	30211	30211		5.2307	0.90143	1	495680	+		3475	21855	2239	2278	3395	3395					-0.015499386850024166
APAEYNLVYY	10	Unmodified	_APAEYNLVYY_					0	0	0			REV__ENST00000524965.5_1_8:145540219-145541001:-|nuORF	REV__ENST00000524965.5_1_8:145540219-145541001:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	602.3153076171875	2	601.790047	1201.56554	-0.41254	-0.00024826	2.5037	0.0015067	2.0911	0.0012584	602.2927750200364	87.59	0.40733	87.59	87.237	87.644	0					13	7	3	0	0	0	0.69947	1	32089	32089		12.532	0.29089	1	837400	+		3476	21855	2240	2279	3396	3396					-0.02717997967761221
APAFAGPG	8	Unmodified	_APAFAGPG_					0	0	0		nc|ENSG00000187391|Q86UL8-2|MAGI2;ENSG00000187391|ENST00000354212|MAGI2	nc|ENSG00000187391|Q86UL8-2|MAGI2	nc|ENSG00000187391|Q86UL8-2|MAGI2	MULTI-SECPEP	A375_MHC_IP_R1	1	686.7106323242188	1	687.346052	686.338775	-0.58071	-0.00039915	0.76084	0.00052296	0.18013	0.00012381	687.3464408179611	93.216	1.9327	93.216	92.718	94.651	0					59	37	2	0	0	0	0.972	1	34716	34716		0	0	1	2378600			3477	8823	2241	2280	3397	3397					-0.016940719453714337
APAFAGPG	8	Unmodified	_APAFAGPG_					0	0	0		nc|ENSG00000187391|Q86UL8-2|MAGI2;ENSG00000187391|ENST00000354212|MAGI2	nc|ENSG00000187391|Q86UL8-2|MAGI2	nc|ENSG00000187391|Q86UL8-2|MAGI2	MULTI-SECPEP	A375_MHC_IP_R1	1	686.9141845703125	1	687.346052	686.338775	-0.62953	-0.00043271	0.75942	0.00052198	0.12988	8.9275E-05	687.3463481627507	91.705	2.0768	91.705	90.641	92.718	0					74	40	2	0	0	0	0.972	1	33403	33403		0.79363	0	1	4970200			3478	8823	2241	2280	3398	3398					-0.016940719453714337
APAGGRGF	8	Unmodified	_APAGGRGF_					0	0	0		ENSG00000142025|ENST00000269945|DMRTC2	ENSG00000142025|ENST00000269945|DMRTC2	ENSG00000142025|ENST00000269945|DMRTC2	MSMS	A375_MHC_IP_R2	2	366.6383056640625	2	366.693013	731.371472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.068	1	48.829	48.329	49.329	0.76128								0	0	0	0.16876	1	18043	18043		0.79363	0.10326	1				3479	5285	2242	2281	3399	3399					-0.004958648225169782
APAGPFPPSLY	11	Unmodified	_APAGPFPPSLY_					0	0	0			REV__ENST00000435817.6_1_5:141019007-141019274:-|nuORF	REV__ENST00000435817.6_1_5:141019007-141019274:-|nuORF	MSMS	A375_MHC_IP_R1	1	558.6978759765625	2	558.78985	1115.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.568	1	57.568	57.068	58.068	0								0	0	0	0.15902	1	20658	20658		14.838	1.7958	1		+		3480	24755	2243	2282	3400	3400					0.011986271030536955
APAHIQSRR	9	Unmodified	_APAHIQSRR_					0	0	0			REV__ENSG00000145934|ENST00000518659|TENM2	REV__ENSG00000145934|ENST00000518659|TENM2	MULTI-SECPEP	A375_MHC_IP_R1	1	518.1927490234375	2	518.293956	1034.57336	-0.55427	-0.00028727	1.2311	0.00063808	0.67685	0.00035081	518.2945645103446	24.946	0.2524	24.946	24.801	25.053	0					5	4	2	0	0	0	0.79535	1	7181	7181		3.2813	0	1	2139700	+		3481	19505	2244	2283	3401	3401					0.057456188630339966
APAHIQSRR	9	Unmodified	_APAHIQSRR_					0	0	0			REV__ENSG00000145934|ENST00000518659|TENM2	REV__ENSG00000145934|ENST00000518659|TENM2	MULTI-MATCH	A375_MHC_IP_R2	2		2	518.293956	1034.57336	-1.0196	-0.00052847	1.2841	0.00066555	0.26449	0.00013708	518.294820185899	24.349	0.20321	24.992	24.857	25.06	0.64368	0.023377	3.8896E-05	NaN	3.2813	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3453600	+		3482	19505	2244	2283							0.057456188630339966
APAITRSSCR	10	Unmodified	_APAITRSSCR_					0	0	0		ENSG00000129749|ENST00000250699|CHRNA10	ENSG00000129749|ENST00000250699|CHRNA10	ENSG00000129749|ENST00000250699|CHRNA10	MSMS	A375_MHC_IP_R2	2	354.61346435546875	3	354.522197	1060.54476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.808	1	40.582	40.082	41.082	0.77451								0	0	0	0.15531	1	14716	14716		3.5871	1.0886	1				3483	4210	2245	2284	3402	3402					0.016911331715846245
APAKIKKA	8	Unmodified	_APAKIKKA_					0	0	0			REV__RGS1|p.T167A|1|0.13|ENSG00000090104|chr1:192579191-192579191|A/G|missense_variant	REV__RGS1|p.T167A|1|0.13|ENSG00000090104|chr1:192579191-192579191|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	826.17724609375	1	826.550899	825.543623	-0.64799	-0.0005356	0.089256	7.3775E-05	-0.55874	-0.00046182	826.5509594852816	85.168	0.51147	85.904	85.626	86.137	0.73602					19	9	3	0	0	0	0.77781	1	32397	32397		2.8892	0.31174	1	7109700	+		3484	27886	2246	2285	3403	3403					0.1238728686498689
APAKPPGP	8	Unmodified	_APAKPPGP_					0	0	0		nc|ENSG00000102181|Q8TCZ2-5|CD99L2	nc|ENSG00000102181|Q8TCZ2-5|CD99L2	nc|ENSG00000102181|Q8TCZ2-5|CD99L2	MULTI-SECPEP	A375_MHC_IP_R1	1	368.11358642578125	2	367.713414	733.412274	0.29992	0.00011029	0.45511	0.00016735	0.75503	0.00027764	367.71354131189446	57.237	0.45926	57.237	57.059	57.518	0					12	8	2	0	0	0	0.972	1	20580	20580		2.5775	1.7838	1	1656400			3485	14517	2247	2286	3404	3404					0.03490476497097461
APALRGLARAF	11	Unmodified	_APALRGLARAF_					0	0	0		nc|ENSG00000158792|Q8IUW3-2|SPATA2L;ENSG00000158792|ENST00000289805|SPATA2L	nc|ENSG00000158792|Q8IUW3-2|SPATA2L	nc|ENSG00000158792|Q8IUW3-2|SPATA2L	MSMS	A375_MHC_IP_R1	1	381.618896484375	3	381.564614	1141.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.329	1	35.329	34.829	35.829	0								0	0	0	0.16151	1	11745	11745		5.4027	0	1				3486	6329	2248	2287	3405	3405					0.10684222108079666
APANVPPAAPR	11	Unmodified	_APANVPPAAPR_					0	0	0			REV__ENST00000462001.1_1_3:50327954-50329668:-|nuORF	REV__ENST00000462001.1_1_3:50327954-50329668:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	354.61358642578125	3	354.201452	1059.58253	0.089959	3.1863E-05	0.38929	0.00013789	0.47924	0.00016975	354.2015564340077	38.704	0.56285	38.704	38.319	38.882	0					20	10	3	0	0	0	0.68072	1	13199	13199		17.049	2.0914	1	6213400	+		3487	24545	2249	2288	3406	3406					0.05511967428697062
APAPDSDPLM	10	Unmodified	_APAPDSDPLM_					0	0	0			REV__ENSG00000102034|ENST00000308167|ELF4	REV__ENSG00000102034|ENST00000308167|ELF4	MSMS	A375_MHC_IP_R2	2	507.2105712890625	2	507.23405	1012.45355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.845	1	83.587	83.087	84.087	0.74192								0	0	0	0.15256	1	31476	31476		12.532	0	1		+		3488	17202	2250	2289	3407	3407					-0.05218175316394991
APAPTGTGFHY	11	Unmodified	_APAPTGTGFHY_					0	0	0			REV__nc|ENSG00000005483|Q8IZD2-6|KMT2E	REV__nc|ENSG00000005483|Q8IZD2-6|KMT2E	MSMS	A375_MHC_IP_R2	2	559.6634521484375	2	559.766906	1117.51926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.137	1	81.882	81.382	82.382	0.74474								0	0	0	0.16151	1	30809	30809		10.824	1.4765	1		+		3489	27088	2251	2290	3408	3408					-0.034800180791762614
APAQTLRPNPG	11	Unmodified	_APAQTLRPNPG_					0	0	0			REV__ENST00000354992.6_1_22:34316098-34316365:-|nuORF	REV__ENST00000354992.6_1_22:34316098-34316365:-|nuORF	MSMS	A375_MHC_IP_R1	1	561.1941528320312	2	561.306729	1120.59891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.432	1	19.432	18.932	19.932	0								0	0	0	0.1623	1	4817	4817		6.7232	0	1		+		3490	23817	2252	2291	3409	3409					0.04343048594796528
APAQTNEPP	9	Unmodified	_APAQTNEPP_					0	0	0			REV__ENSG00000134398|ENST00000256797|ERN2	REV__ENSG00000134398|ENST00000256797|ERN2	MULTI-SECPEP	A375_MHC_IP_R2	2	462.65264892578125	2	462.724707	923.43486	-1.0124	-0.00046845	0.38319	0.00017731	-0.62918	-0.00029114	462.7249111390667	36.728	0.3567	37.499	37.308	37.665	0.7709					11	6	2	0	0	0	0.77244	1	13448	13448		0.6015	0	1	1366400	+		3491	18777	2253	2292	3410	3410					-0.02991968895946684
APASDDEG	8	Unmodified	_APASDDEG_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MSMS	A375_MHC_IP_R2	2	381.1214599609375	2	381.15104	760.287527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.453	1	66.191	65.691	66.691	0.73811								0	0	0	0.16876	1	24814	24814		2.3027	1.5091	1				3492	4093	2254	2293	3411	3411					-0.10220485500747145
APASGGESISL	11	Unmodified	_APASGGESISL_					0	0	0			REV__ENST00000274031.7_1_4:140477598-140477679:-|nuORF	REV__ENST00000274031.7_1_4:140477598-140477679:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	496.66351318359375	2	494.750921	987.48729	-0.6084	-0.00030101	0.066546	3.2924E-05	-0.54185	-0.00026808	494.75100941774656	41.189	3.3492	41.189	40.66	44.01	0					150	65	5	0	0	0	0.69231	1	14118	14118		16.149	0.30192	1	588870000	+		3493	23285	2255	2294	3412	3412					-0.006954305529802696
APASILWRY	9	Unmodified	_APASILWRY_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MULTI-SECPEP	A375_MHC_IP_R1	1	539.1976318359375	2	538.798009	1075.58147	-0.45774	-0.00024663	-0.78846	-0.00042482	-1.2462	-0.00067145	538.7976164793247	22.921	0.4015	22.921	22.723	23.125	0					18	7	3	0	0	0	0.77244	1	6205	6205		2.3027	0	1	4838400	+		3494	19731	2256	2295	3413	3413					0.046697530598066805
APASPVTVQV	10	Unmodified	_APASPVTVQV_					0	0	0		ENSG00000253958|ENST00000519106|CLDN23	ENSG00000253958|ENST00000519106|CLDN23	ENSG00000253958|ENST00000519106|CLDN23	MULTI-SECPEP	A375_MHC_IP_R1	1	485.1739501953125	2	484.7742	967.533846	-0.62701	-0.00030396	0.20213	9.7987E-05	-0.42488	-0.00020597	484.77426357224147	41.542	0.86844	41.542	41.063	41.932	0					29	16	3	0	0	0	0.24499	1	14349	14349		61.357	0	1	10178000			3495	9872	2257	2296	3414	3414					0.048780540689676855
APASQSGSFP	10	Unmodified	_APASQSGSFP_					0	0	0			REV__ENST00000492449.5_1_3:184603882-184769810:+|nuORF	REV__ENST00000492449.5_1_3:184603882-184769810:+|nuORF	MSMS	A375_MHC_IP_R2	2	474.73297119140625	2	474.724707	947.43486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.694	1	81.439	80.939	81.939	0.74474								0	0	0	0.15398	1	30638	30638		7.9102	1.5561	1		+		3496	20001	2258	2297	3415	3415					-0.04095968895933311
APASRESP	8	Unmodified	_APASRESP_					0	0	0		ENST00000361961.7_1_12:39764061-39837002:-|nuORF	ENST00000361961.7_1_12:39764061-39837002:-|nuORF	ENST00000361961.7_1_12:39764061-39837002:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	408.2824401855469	2	407.706317	813.398081	-0.25336	-0.0001033	0.4282	0.00017458	0.17484	7.1284E-05	407.7059405149994	19.005	0.19953	19.608	19.483	19.683	0.60308					5	3	2	0	0	0	0.96296	1	5767	5767		15.768	0	1	1605300			3497	11053	2259	2298	3416	3416					-0.0160822072184601
APATIRNKTYL	11	Unmodified	_APATIRNKTYL_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-SECPEP	A375_MHC_IP_R2	2	624.7582397460938	2	624.358962	1246.70337	-0.94253	-0.00058848	0.59823	0.00037351	-0.34431	-0.00021497	624.3592306416969	66.221	1.1226	66.959	66.425	67.547	0.73811					55	21	4	0	0	0	0.9754	1	25032	25032		12.241	0	1	19465000			3498	2325	2260	2299	3417	3417					0.08988750351545605
APATLLRRRRA	11	Unmodified	_APATLLRRRRA_					0	0	0		ENST00000403856.1_2_2:43820015-43823127:-|nuORF;ENST00000405975.6_3_2:43819535-43823169:-|nuORF	ENST00000403856.1_2_2:43820015-43823127:-|nuORF	ENST00000403856.1_2_2:43820015-43823127:-|nuORF	MSMS	A375_MHC_IP_R1	1	640.9896850585938	2	640.904737	1279.79492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.052	1	82.052	81.552	82.552	0								0	0	0	0.16313	1	29995	29995		5.2969	0	1				3499	11578	2261	2300	3418	3418					0.16621478559363823
APATPTRPDAL	11	Unmodified	_APATPTRPDAL_					0	0	0			REV__ENSG00000167978|ENST00000301740|SRRM2	REV__ENSG00000167978|ENST00000301740|SRRM2	MULTI-SECPEP	A375_MHC_IP_R2	2	370.9366760253906	3	370.536501	1108.58767	0.34365	0.00012734	-0.28601	-0.00010598	0.057638	2.1357E-05	370.53639687182164	45.662	0.40141	46.427	46.201	46.603	0.76519					13	7	2	0	0	0	0.99109	1	17106	17106		0.45452	0.35968	1	2574500	+		3500	20809	2262	2301	3419	3419					0.037722265006550515
APCPKDLRPL	10	Unmodified	_APCPKDLRPL_					0	0	0			REV__nc|ENSG00000165271|Q9H6R4-2|NOL6	REV__nc|ENSG00000165271|Q9H6R4-2|NOL6	MULTI-SECPEP	A375_MHC_IP_R2	2	370.9366760253906	3	370.54271	1108.6063	0.34473	0.00012774	-1.9322	-0.00071597	-1.5875	-0.00058823	370.54178552615195	45.685	0.19955	46.45	46.303	46.503	0.76519					5	3	2	0	0	0	0.93615	1	17106	17106		1.9064	1.9064	1	550100	+		3501	20569	2263	2302	3420	3420					0.05634064870855582
APCSGESAPP	10	Unmodified	_APCSGESAPP_					0	0	0			REV__nc|ENSG00000113719|Q969X5-3|ERGIC1	REV__nc|ENSG00000113719|Q969X5-3|ERGIC1	MULTI-MSMS	A375_MHC_IP_R2	2	458.61932373046875	2	458.197467	914.380382	-0.53841	-0.0002467	-3.0515	-0.0013982	-3.5899	-0.0016449	458.1961828894044	34.922	0.20197	35.685	35.525	35.727	0.76338					5	3	2	0	0	0	0.6806	1	12624	12624		14.838	0	1	1314300	+		3502	27179	2264	2303	3421	3421					-0.08023304039033974
APCSGESAPP	10	Unmodified	_APCSGESAPP_					0	0	0			REV__nc|ENSG00000113719|Q969X5-3|ERGIC1	REV__nc|ENSG00000113719|Q969X5-3|ERGIC1	MULTI-MATCH	A375_MHC_IP_R1	1		2	458.197467	914.380382	-0.022044	-1.01E-05	-3.8556	-0.0017666	-3.8776	-0.0017767	458.1956203090284	35.651	0.20521	35.651	35.522	35.727	0	-0.016817	-9.1108E-05	NaN	14.838	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	869030	+		3503	27179	2264	2303							-0.08023304039033974
APCSGESAPP	10	Unmodified	_APCSGESAPP_					0	0	0			REV__nc|ENSG00000113719|Q969X5-3|ERGIC1	REV__nc|ENSG00000113719|Q969X5-3|ERGIC1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	458.197467	914.380382	-0.53841	-0.0002467	-3.0515	-0.0013982	-3.5899	-0.0016449	458.1961828894044	34.922	0.20197	35.685	35.525	35.727	0.76338	0.016817	0.00064576	NaN	14.838	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1314300	+		3504	27179	2264	2303							-0.08023304039033974
APDDQELL	8	Unmodified	_APDDQELL_					0	0	0		nc|ENSG00000213397|Q99871-2|HAUS7;nc|ENSG00000213397|Q99871-3|HAUS7;ENSG00000213397|ENST00000370211|HAUS7;ENST00000464993.1_1_X:152722593-152735946:-|nuORF	nc|ENSG00000213397|Q99871-2|HAUS7	nc|ENSG00000213397|Q99871-2|HAUS7	MULTI-MSMS	A375_MHC_IP_R1	1	451.68243408203125	2	450.71909	899.423627	-0.32159	-0.00014495	-4.0348	-0.0018186	-4.3564	-0.0019635	450.71773642782114	32.346	0.30623	32.346	32.127	32.434	0					15	5	4	0	0	0	0.76654	1	10355	10355		15.847	6.4997	1	1948700			3505	14894	2265	2304	3422	3422					-0.030107909900834784
APDKLSVVKK	10	Unmodified	_APDKLSVVKK_					0	0	0		nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	MSMS	A375_MHC_IP_R1	1	362.2734375	3	362.229008	1083.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.666	1	45.666	45.166	46.166	0								0	0	0	0.15382	1	15991	15991		8.4443	0.83535	1				3506	8923	2266	2305	3423	3423					0.1267086443685912
APDLPVSGLF	10	Unmodified	_APDLPVSGLF_					0	0	0			REV__ENSG00000095906|ENST00000262302|NUBP2	REV__ENSG00000095906|ENST00000262302|NUBP2	MULTI-SECPEP	A375_MHC_IP_R1	1	508.6766662597656	2	508.276575	1014.5386	-0.57566	-0.00029259	-0.19554	-9.9389E-05	-0.7712	-0.00039198	508.2764555837752	86.671	0.96249	86.671	86.274	87.237	0					27	18	2	0	0	0	0.48072	1	31743	31743		46.021	15.384	1	4409500	+		3507	17001	2267	2306	3424	3424					0.03190938211719185
APDPNFNVDV	10	Unmodified	_APDPNFNVDV_					0	0	0			REV__nc|ENSG00000167074|Q10587-2|TEF	REV__nc|ENSG00000167074|Q10587-2|TEF	MULTI-MSMS	A375_MHC_IP_R1	1	544.243408203125	2	544.256371	1086.49819	-0.45688	-0.00024866	-1.1279	-0.00061388	-1.5848	-0.00086254	544.2558126113454	88.879	1.1699	88.879	88.205	89.375	0					36	22	2	0	0	0	0.70329	1	32457	32457		10.824	0.75	1	2582100	+		3508	20728	2268	2307	3425	3425					-0.04160028178716857
APEEQDAEA	9	Unmodified	_APEEQDAEA_					0	0	0		ENSG00000154429|ENST00000284617|CCSAP;nc|ENSG00000154429|Q6IQ19-3|CCSAP;nc|ENSG00000154429|Q6IQ19-4|CCSAP;ENST00000483092.1_1_1:229463285-229478721:-|nuORF	ENSG00000154429|ENST00000284617|CCSAP	ENSG00000154429|ENST00000284617|CCSAP	MSMS	A375_MHC_IP_R1	1	480.135498046875	2	480.201261	958.38797	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.687	1	70.687	70.187	71.187	0								0	0	0	0.15486	1	25668	25668		11.64	0	1				3509	6086	2269	2308	3426	3426					-0.09288873237767348
APEEQDAEA	9	Unmodified	_APEEQDAEA_					0	0	0		ENSG00000154429|ENST00000284617|CCSAP;nc|ENSG00000154429|Q6IQ19-3|CCSAP;nc|ENSG00000154429|Q6IQ19-4|CCSAP;ENST00000483092.1_1_1:229463285-229478721:-|nuORF	ENSG00000154429|ENST00000284617|CCSAP	ENSG00000154429|ENST00000284617|CCSAP	MSMS	A375_MHC_IP_R2	2	480.13592529296875	2	480.201261	958.38797	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.945	1	70.679	70.179	71.179	0.73421								0	0	0	0.15283	1	26514	26514		16.942	7.5949	1				3510	6086	2269	2308	3427	3427					-0.09288873237767348
APEHREQEW	9	Unmodified	_APEHREQEW_					0	0	0		ENSG00000110811|ENST00000290510|P3H3;nc|ENSG00000110811|Q8IVL6-2|P3H3	ENSG00000110811|ENST00000290510|P3H3	ENSG00000110811|ENST00000290510|P3H3	MULTI-MSMS	A375_MHC_IP_R1	1	591.669921875	2	591.270344	1180.52613	-0.43468	-0.00025701	-0.11794	-6.9733E-05	-0.55261	-0.00032674	591.2704153847135	27.254	0.4048	27.254	27.078	27.482	0					13	7	2	0	0	0	0.4867	1	8254	8254		20.454	0	1	5675100			3511	2950	2270	2309	3428	3428					-0.05690705198617252
APEHREQEW	9	Unmodified	_APEHREQEW_					0	0	0		ENSG00000110811|ENST00000290510|P3H3;nc|ENSG00000110811|Q8IVL6-2|P3H3	ENSG00000110811|ENST00000290510|P3H3	ENSG00000110811|ENST00000290510|P3H3	MULTI-MSMS	A375_MHC_IP_R2	2	591.6700439453125	2	591.270344	1180.52613	-0.90227	-0.00053349	0.42015	0.00024842	-0.48212	-0.00028506	591.2706010584685	26.671	0.4588	27.331	27.161	27.62	0.65992					20	8	3	0	0	0	0.4867	1	9037	9037		20.454	0	1	4766100			3512	2950	2270	2309	3429	3429					-0.05690705198617252
APEIFGMN	8	Unmodified	_APEIFGMN_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7;nc|ENSG00000118997|Q8WXX0-2|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MSMS	A375_MHC_IP_R1	1	439.7733154296875	2	439.707471	877.400389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.678	1	20.678	20.178	21.178	0								0	0	0	0.16876	1	5342	5342		9.3474	0	1				3513	3568	2271	2310	3430	3430					-0.0432150830839646
APEKDLPLRLR	11	Unmodified	_APEKDLPLRLR_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MSMS	A375_MHC_IP_R2	2	654.2034301757812	2	654.393336	1306.77212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.48	1	110.22	109.72	110.72	0.74684								0	0	0	0.16249	1	41314	41314		5.7319	1.5423	1		+		3514	21494	2272	2311	3431	3431					0.13100414651216852
APFIWRISM	9	Unmodified	_APFIWRISM_					0	0	0		ENST00000576846.1_1_17:7530278-7530680:-|nuORF	ENST00000576846.1_1_17:7530278-7530680:-|nuORF	ENST00000576846.1_1_17:7530278-7530680:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	561.0717163085938	2	560.802237	1119.58992	-0.6798	-0.00038124	2.6069	0.001462	1.9271	0.0010807	561.3049558447152	85.573	0.30511	85.573	85.412	85.717	0					13	5	3	0	0	0	0.75466	1	31363	31363		7.9102	0	1	997490			3515	13644	2273	2312	3432	3432					0.03490983704750761
APFKDKRNF	9	Unmodified	_APFKDKRNF_					0	0	0			REV__MED16|p.L271F|1|0.35|ENSG00000175221|chr19:885838-885838|G/A|missense_variant	REV__MED16|p.L271F|1|0.35|ENSG00000175221|chr19:885838-885838|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	374.43353271484375	3	374.873336	1121.59818	0.33407	0.00012523	-1.2966	-0.00048605	-0.9625	-0.00036081	374.8730995885164	37.071	0.55826	37.071	36.895	37.454	0					16	10	2	0	0	0	0.73363	1	12576	12576		10.8	8.5167	1	1147700	+		3516	27004	2274	2313	3433	3433					0.04224253945744749
APFNVLVP	8	Unmodified	_APFNVLVP_					0	0	0		nc|ENSG00000173947|Q8TCI5-2|CIMAP3;ENST00000484512.1_1_1:111889274-111891329:+|nuORF;nc|ENSG00000173947|Q8TCI5-3|CIMAP3;ENSG00000173947|ENST00000369738|PIFO	nc|ENSG00000173947|Q8TCI5-2|CIMAP3	nc|ENSG00000173947|Q8TCI5-2|CIMAP3	MULTI-SECPEP	A375_MHC_IP_R1	1	428.3189697265625	2	428.749996	855.485439	-0.50071	-0.00021468	0.56191	0.00024092	0.061201	2.624E-05	428.750109681822	38.317	0.30512	38.317	38.118	38.423	0					7	5	2	0	0	0	0.96296	1	12955	12955		10.183	0	1	786060			3517	7844	2275	2314	3434	3434					0.05191605219704343
APGELSSVTAT	11	Unmodified	_APGELSSVTAT_					0	0	0			REV__nc|ENSG00000130940|Q86V15-2|CASZ1	REV__nc|ENSG00000130940|Q86V15-2|CASZ1	MSMS	A375_MHC_IP_R2	2	516.9417724609375	2	516.764029	1031.5135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.84	1	19.443	18.943	19.943	0.60308								0	0	0	0.14647	1	5624	5624		22.736	2.2827	1		+		3518	18574	2276	2315	3435	3435					-0.0009916138151311316
APGGAAPS	8	Unmodified	_APGGAAPS_					0	0	0			REV__ENST00000492099.1_1_15:84116018-84234026:+|nuORF	REV__ENST00000492099.1_1_15:84116018-84234026:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	627.6878051757812	1	627.309666	626.30239	-0.77168	-0.00048408	-0.60619	-0.00038027	-1.3779	-0.00086435	627.3128117932355	91.257	1.013	91.257	90.794	91.807	0					31	19	3	0	0	0	0.93416	1	33709	33709		9.3474	0	1	2227700	+		3519	25404	2277	2316	3436	3436					-0.02570948842094367
APGGRSWWK	9	Unmodified	_APGGRSWWK_					0	0	0		ENSG00000109762|ENST00000652585|SNX25	ENSG00000109762|ENST00000652585|SNX25	ENSG00000109762|ENST00000652585|SNX25	MULTI-SECPEP	A375_MHC_IP_R2	2	1044.1925048828125	1	1044.53737	1043.5301	0.040815	4.2633E-05	1.2165	0.0012707	1.2573	0.0013133	1044.535260427474	130.46	0.20291	130.68	130.55	130.75	0.2142					5	3	2	0	0	0	0.77244	1	51245	51245		9.3474	1.4373	1	9826800			3520	2890	2278	2317	3437	3437					0.010074290857346568
APGGTESQS	9	Unmodified	_APGGTESQS_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-SECPEP	A375_MHC_IP_R1	1	833.8201293945312	1	833.363552	832.356276	-0.56506	-0.0004709	2.4014	0.0020012	1.8363	0.0015303	833.366440686424	129.66	0.25471	129.66	129.55	129.8	0					6	4	2	0	0	0	0.69504	1	49855	49855		12.532	0	1	2589600			3521	5618	2279	2318	3438	3438					-0.06660821201035105
APGKKGII	8	Unmodified	_APGKKGII_					0	0	0			REV__tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	REV__tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	392.6580505371094	2	392.257988	782.501424	0.13045	5.1171E-05	0.28829	0.00011309	0.41875	0.00016426	392.25794705591284	57.492	0.50831	57.492	57.263	57.771	0					16	9	3	0	0	0	0.7338	1	20654	20654		24.674	5.2349	1	2552700	+		3522	28801	2280	2319	3439	3439					0.10147311456626085
APGKKGII	8	Unmodified	_APGKKGII_					0	0	0			REV__tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	REV__tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	392.65826416015625	2	392.257988	782.501424	0.11097	4.3529E-05	0.33719	0.00013227	0.44816	0.0001758	392.2580009173601	60.523	0.56025	60.523	60.21	60.77	0					18	10	2	0	0	0	0.7338	1	21786	21786		24.674	5.2349	1	2224200	+		3523	28801	2280	2319	3440	3440					0.10147311456626085
APGKKGII	8	Unmodified	_APGKKGII_					0	0	0			REV__tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	REV__tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	392.627685546875	2	392.257988	782.501424	-0.515	-0.00020201	0.45447	0.00017827	-0.06053	-2.3743E-05	392.25813044966833	56.376	0.50922	57.126	56.847	57.356	0.75015					13	9	2	0	0	0	0.75805	2	21309	21309;21336		18.135	5.6034	1	2492700	+		3524	28801	2280	2319	3441;3442	3441					0.10147311456626085
APGKKGII	8	Unmodified	_APGKKGII_					0	0	0			REV__tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	REV__tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	392.6578369140625	2	392.257988	782.501424	-0.59056	-0.00023165	0.40973	0.00016072	-0.18083	-7.0933E-05	392.2580716296866	59.425	0.45324	60.172	59.896	60.349	0.74714					14	8	2	0	0	0	0.7338	1	22483	22483		24.674	5.2349	1	2144400	+		3525	28801	2280	2319	3443	3443					0.10147311456626085
APGKKGII	8	Unmodified	_APGKKGII_					0	0	0			REV__tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	REV__tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	392.257988	782.501424	0.13045	5.1171E-05	0.28829	0.00011309	0.41875	0.00016426	392.25794705591284	57.492	0.50831	57.492	57.263	57.771	0	0.18323	-6.4413E-05	NaN	24.674	16	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2552700	+		3526	28801	2280	2319							0.10147311456626085
APGKKGII	8	Unmodified	_APGKKGII_					0	0	0			REV__tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	REV__tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	392.257988	782.501424	0.11097	4.3529E-05	0.33719	0.00013227	0.44816	0.0001758	392.2580009173601	60.523	0.56025	60.523	60.21	60.77	0	0.17547	-2.6251E-05	NaN	24.674	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2224200	+		3527	28801	2280	2319							0.10147311456626085
APGKKGII	8	Unmodified	_APGKKGII_					0	0	0			REV__tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	REV__tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	392.257988	782.501424	-0.515	-0.00020201	0.45447	0.00017827	-0.06053	-2.3743E-05	392.25813044966833	56.376	0.50922	57.126	56.847	57.356	0.75015	-0.18323	6.5953E-05	NaN	24.674	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2492700	+		3528	28801	2280	2319							0.10147311456626085
APGKKGII	8	Unmodified	_APGKKGII_					0	0	0			REV__tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	REV__tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	392.257988	782.501424	-0.59056	-0.00023165	0.40973	0.00016072	-0.18083	-7.0933E-05	392.2580716296866	59.425	0.45324	60.172	59.896	60.349	0.74714	-0.17547	3.0653E-05	NaN	24.674	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2144400	+		3529	28801	2280	2319							0.10147311456626085
APGLRQLPVR	10	Unmodified	_APGLRQLPVR_					0	0	0		ENST00000314134.3_1_11:45826648-45827152:+|nuORF	ENST00000314134.3_1_11:45826648-45827152:+|nuORF	ENST00000314134.3_1_11:45826648-45827152:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	369.6017150878906	3	369.564614	1105.67201	0.37908	0.0001401	-0.059224	-2.1887E-05	0.31986	0.00011821	369.56455891997354	37.18	1.3229	37.18	36.895	38.218	0					56	25	4	0	0	0	0.41205	1	12600	12600		33.445	3.0134	1	41102000			3530	10648	2281	2320	3444	3444					0.12340222108082344
APGNISCLWVF	11	Unmodified	_APGNISCLWVF_					0	0	0		nc|ENSG00000122025|P36888-2|FLT3;ENSG00000122025|ENST00000241453|FLT3	nc|ENSG00000122025|P36888-2|FLT3	nc|ENSG00000122025|P36888-2|FLT3	MULTI-SECPEP	A375_MHC_IP_R1	1	603.7794189453125	2	603.802434	1205.59032	-0.53349	-0.00032213	-2.1567	-0.0013022	-2.6902	-0.0016244	603.801664875081	90.341	0.25299	90.341	90.235	90.488	0					5	4	2	0	0	0	0.97871	1	33216	33216		6.7232	3.4419	1	1769800			3531	3757	2282	2321	3445	3445					-0.004256413660641556
APGPGLRLS	9	Unmodified	_APGPGLRLS_					0	0	0			REV__ENST00000572240.5_1_16:3078109-3079857:-|nuORF	REV__ENST00000572240.5_1_16:3078109-3079857:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	434.6557922363281	2	434.255977	866.497401	-0.4955	-0.00021517	0.28248	0.00012267	-0.21301	-9.2503E-05	434.25605646827995	26.347	0.80744	26.347	26.17	26.978	0					22	15	2	0	0	0	0.053904	1	7842	7842		47.749	14.963	1	16936000	+		3532	20233	2283	2322	3446	3446					0.05881221962908967
APGPGLRLS	9	Unmodified	_APGPGLRLS_					0	0	0			REV__ENST00000572240.5_1_16:3078109-3079857:-|nuORF	REV__ENST00000572240.5_1_16:3078109-3079857:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	434.65576171875	2	434.255977	866.497401	-0.71251	-0.00030941	0.061987	2.6918E-05	-0.65053	-0.00028249	434.2559406671036	25.727	0.66276	26.387	26.194	26.857	0.65992					29	12	3	0	0	0	0.13064	1	8625	8625		39.95	13.682	1	12035000	+		3533	20233	2283	2322	3447	3447					0.05881221962908967
APGPPVGL	8	Unmodified	_APGPPVGL_					0	0	0			REV__ENSG00000141642|ENST00000269466|ELAC1	REV__ENSG00000141642|ENST00000269466|ELAC1	MULTI-SECPEP	A375_MHC_IP_R1	1	707.17822265625	1	707.408652	706.401375	-0.64602	-0.000457	-0.045459	-3.2158E-05	-0.69147	-0.00048916	707.4084852040705	81.228	0.60845	81.228	80.948	81.556	0					15	11	2	0	0	0	0.972	1	29703	29703		6.3541	0	1	5398600	+		3534	19283	2284	2323	3448	3448					0.03643074122805956
APGPPVGL	8	Unmodified	_APGPPVGL_					0	0	0			REV__ENSG00000141642|ENST00000269466|ELAC1	REV__ENSG00000141642|ENST00000269466|ELAC1	MULTI-MATCH	A375_MHC_IP_R2	2		1	707.408652	706.401375	-0.72807	-0.00051504	-0.17079	-0.00012082	-0.89886	-0.00063586	707.408515415057	80.19	0.65705	80.935	80.708	81.365	0.74474	-0.14646	-2.7251E-05	NaN	6.3541	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4757000	+		3535	19283	2284	2323							0.03643074122805956
APGQHLKFQP	10	Unmodified	_APGQHLKFQP_					0	0	0		ENSG00000105696|ENST00000262817|TMEM59L;ENST00000598660.1_1_19:18729161-18731343:+|nuORF	ENSG00000105696|ENST00000262817|TMEM59L	ENSG00000105696|ENST00000262817|TMEM59L	MULTI-SECPEP	A375_MHC_IP_R2	2	374.4333801269531	3	374.873336	1121.59818	0.19581	7.3406E-05	-1.3783	-0.0005167	-1.1825	-0.0004433	374.8727949163521	36.019	0.30717	36.783	36.69	36.997	0.76338					7	5	2	0	0	0	0.9269	1	13167	13167		6.1918	4.2855	1	1663000			3536	2631	2285	2324	3449	3449					0.04224253945744749
APGQRTCT	8	Unmodified	_APGQRTCT_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;ENST00000461325.1_1_3:52551001-52552043:+|nuORF	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-SECPEP	A375_MHC_IP_R2	2	417.2909851074219	2	417.200344	832.386136	-0.11989	-5.002E-05	0.90452	0.00037737	0.78462	0.00032735	417.20072731547174	32.943	0.30608	33.68	33.518	33.825	0.73691					7	5	2	0	0	0	0.972	1	11707	11707		3.9444	0	1	1154800			3537	981	2286	2325	3450	3450					-0.03676160736699785
APGSAAPATP	10	Unmodified	_APGSAAPATP_					0	0	0			REV__TRRAP|p.P494S|1|0.51|ENSG00000196367|chr7:98910185-98910185|C/T|missense_variant	REV__TRRAP|p.P494S|1|0.51|ENSG00000196367|chr7:98910185-98910185|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	838.8392333984375	1	839.425758	838.418482	-0.75793	-0.00063622	3.0194	0.0025346	2.2615	0.0018984	839.4286576072973	129.76	0.30286	129.98	129.79	130.1	0.2142					7	5	2	0	0	0	0.69172	1	50965	50965		32.305	14.171	1	2803700	+		3538	28918	2287	2326	3451	3451					-0.00719050062059523
APGSCALWSY	10	Unmodified	_APGSCALWSY_					0	0	0		ENST00000547736.1_1_12:120964341-120966944:-|nuORF;ENST00000547448.1_1_12:120965158-120966944:-|nuORF;ENSG00000110871|ENST00000288532|COQ5	ENST00000547736.1_1_12:120964341-120966944:-|nuORF	ENST00000547736.1_1_12:120964341-120966944:-|nuORF	MSMS	A375_MHC_IP_R2	2	527.6771240234375	2	527.73676	1053.45897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.926	1	33.663	33.163	34.163	0.73692								0	0	0	0.14522	1	11758	11758		26.884	0.54238	1				3539	2953	2288	2327	3452	3452					-0.06562451733930175
APGSGLGNNQ	10	Unmodified	_APGSGLGNNQ_					0	0	0			REV__nc|ENSG00000134313|Q9ULH0-4|KIDINS220	REV__nc|ENSG00000134313|Q9ULH0-4|KIDINS220	MULTI-MSMS	A375_MHC_IP_R2	2	458.1190490722656	2	457.719956	913.425358	-0.62229	-0.00028484	-0.2934	-0.00013429	-0.91569	-0.00041913	457.7194747959291	34.312	0.50956	35.064	34.803	35.312	0.75225					12	9	2	0	0	0	0.70651	1	12368	12368		9.3831	9.3831	1	3550900	+		3540	27232	2289	2328	3453	3453					-0.034817371814710896
APGSGLGNNQ	10	Unmodified	_APGSGLGNNQ_					0	0	0			REV__nc|ENSG00000134313|Q9ULH0-4|KIDINS220	REV__nc|ENSG00000134313|Q9ULH0-4|KIDINS220	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	457.719956	913.425358	-0.62229	-0.00028484	-0.2934	-0.00013429	-0.91569	-0.00041913	457.7194747959291	34.312	0.50956	35.064	34.803	35.312	0.75225	0.082096	-0.00024645	NaN	9.3831	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3550900	+		3541	27232	2289	2328							-0.034817371814710896
APGTPWGAV	9	Unmodified	_APGTPWGAV_					0	0	0		ENST00000459703.5_1_6:36709177-36709585:-|nuORF	ENST00000459703.5_1_6:36709177-36709585:-|nuORF	ENST00000459703.5_1_6:36709177-36709585:-|nuORF	MSMS	A375_MHC_IP_R2	2	428.158203125	2	428.221603	854.428653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.87	1	37.641	37.141	38.141	0.7709								0	0	0	0.15131	1	13464	13464		19.439	4.8573	1				3542	12153	2290	2329	3454	3454					-0.00438442336803746
APGVLHPA	8	Unmodified	_APGVLHPA_					0	0	0		ENSG00000112290|ENST00000392589|WASF1	ENSG00000112290|ENST00000392589|WASF1	ENSG00000112290|ENST00000392589|WASF1	MULTI-MSMS	A375_MHC_IP_R2	2	381.618896484375	2	381.218863	760.423173	-0.26065	-9.9365E-05	1.2167	0.00046382	0.95602	0.00036445	381.21878747344346	34.434	0.50792	35.186	35.057	35.565	0.75225					15	9	3	0	0	0	0.70735	1	12461	12461		32.454	8.2437	1	2298500			3543	3068	2291	2330	3455	3455					0.033378788713775975
APGYFYFPL	9	Unmodified	_APGYFYFPL_					0	0	0		LAMA5|p.H580Y|1|0.43|ENSG00000130702|chr20:62338250-62338250|G/A|missense_variant	LAMA5|p.H580Y|1|0.43|ENSG00000130702|chr20:62338250-62338250|G/A|missense_variant	LAMA5|p.H580Y|1|0.43|ENSG00000130702|chr20:62338250-62338250|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	359.24761962890625	3	358.848016	1073.52222	-0.12376	-4.441E-05	-0.79418	-0.00028499	-0.91793	-0.0003294	358.8476972560099	27.912	0.35302	27.912	27.735	28.088	0					12	6	2	0	0	0	0.77244	1	8566	8566		0	0	1	5361000			3544	14282	2292	2331	3456	3456					-0.01160142954404364
APHFNSLPRA	10	Unmodified	_APHFNSLPRA_					0	0	0		ENSG00000113621|ENST00000358387|TXNDC15;nc|ENSG00000113621|Q96J42-2|TXNDC15;ENST00000506350.1_1_5:134223848-134231723:+|nuORF	ENSG00000113621|ENST00000358387|TXNDC15	ENSG00000113621|ENST00000358387|TXNDC15	MULTI-MSMS	A375_MHC_IP_R1	1	370.9334716796875	3	370.533202	1108.57778	0.39871	0.00014773	0.21654	8.0235E-05	0.61524	0.00022797	370.5331866102228	46.046	0.50687	46.046	45.789	46.295	0					24	9	4	0	0	0	0.7086	1	16137	16137		8.4443	1.3426	1	3825500			3545	3169	2293	2332	3457	3457					0.02783083285930843
APHHSGVYP	9	Unmodified	_APHHSGVYP_					0	0	0		ENSG00000166507|ENST00000309979|NDST2;NDST4|p.H430Y|1|0.35|ENSG00000138653|chr4:114937437-114937437|G/A|missense_variant;nc|ENSG00000138653|Q9H3R1-2|NDST4;nc|ENSG00000070614|P52848-2|NDST1;nc|ENSG00000164100|O95803-3|NDST3;nc|ENSG00000070614|P52848-3|NDST1;ENSG00000138653|ENST00000264363|NDST4;ENSG00000164100|ENST00000296499|NDST3;ENSG00000070614|ENST00000261797|NDST1	ENSG00000166507|ENST00000309979|NDST2	ENSG00000166507|ENST00000309979|NDST2	MULTI-SECPEP	A375_MHC_IP_R1	1	964.209228515625	1	964.463541	963.456264	0.048664	4.6935E-05	0.36669	0.00035366	0.41535	0.00040059	964.4641793605921	89.593	1.3172	89.593	89.069	90.387	0					41	25	2	0	0	0	0.74651	1	33110	33110		8.5933	8.5933	1	2996100			3546	7083	2294	2333	3458	3458					-0.026925390765768498
APHPPAHRY	9	Unmodified	_APHPPAHRY_					0	0	0			REV__AluSp_dup17164|chr6:42889159-42889460:+|1.12422977904819|0.1877517114460719|2.58|472.0|12|1|anti-sense	REV__AluSp_dup17164|chr6:42889159-42889460:+|1.12422977904819|0.1877517114460719|2.58|472.0|12|1|anti-sense	MULTI-SECPEP	A375_MHC_IP_R2	2	522.7194213867188	2	523.26995	1044.52535	-0.45919	-0.00024028	0.84246	0.00044083	0.38327	0.00020055	523.7716641237668	134.05	0.20273	134.21	134.06	134.26	0.16487					5	3	2	0	0	0	0.8028	1	52690	52690		4.3292	0.38484	1	2095000	+		3547	15374	2295	2334	3459	3459					0.00486544942987166
APHPPAHRY	9	Unmodified	_APHPPAHRY_					0	0	0			REV__AluSp_dup17164|chr6:42889159-42889460:+|1.12422977904819|0.1877517114460719|2.58|472.0|12|1|anti-sense	REV__AluSp_dup17164|chr6:42889159-42889460:+|1.12422977904819|0.1877517114460719|2.58|472.0|12|1|anti-sense	MULTI-MATCH	A375_MHC_IP_R1	1		2	523.26995	1044.52535	-0.76212	-0.00039879	0.59284	0.00031022	-0.16927	-8.8575E-05	523.270449207704	134.19	0.20265	134.19	134.07	134.27	0	-0.0088123	-0.0001701	NaN	4.3292	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2190500	+		3548	15374	2295	2334							0.00486544942987166
APHSGPLQPR	10	Unmodified	_APHSGPLQPR_					0	0	0			REV__nc|ENSG00000165025|P43405-2|SYK	REV__nc|ENSG00000165025|P43405-2|SYK	MULTI-MSMS	A375_MHC_IP_R2	2	354.61328125	3	353.861319	1058.56213	-0.32128	-0.00011369	-1.275	-0.00045116	-1.5963	-0.00056485	353.8612983688853	39.323	0.40619	40.097	39.863	40.269	0.77451					15	7	3	0	0	0	0.66712	1	14472	14472		9.544	2.9136	1	1189600	+		3549	20540	2296	2335	3460	3460					0.035187967688898425
APHSGPLQPR	10	Unmodified	_APHSGPLQPR_					0	0	0			REV__nc|ENSG00000165025|P43405-2|SYK	REV__nc|ENSG00000165025|P43405-2|SYK	MULTI-MATCH	A375_MHC_IP_R1	1		3	353.861319	1058.56213	-0.098716	-3.4932E-05	0.067234	2.3792E-05	-0.031482	-1.114E-05	353.8612738539709	40.143	0.30516	40.143	40.05	40.355	0	0.022725	0.00035277	NaN	9.544	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1187500	+		3550	20540	2296	2335							0.035187967688898425
APHSGPLQPR	10	Unmodified	_APHSGPLQPR_					0	0	0			REV__nc|ENSG00000165025|P43405-2|SYK	REV__nc|ENSG00000165025|P43405-2|SYK	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	353.861319	1058.56213	-0.32128	-0.00011369	-1.275	-0.00045116	-1.5963	-0.00056485	353.8612983688853	39.323	0.40619	40.097	39.863	40.269	0.77451	-0.022725	-0.0010721	NaN	9.544	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1189600	+		3551	20540	2296	2335							0.035187967688898425
APIEFRPFA	9	Unmodified	_APIEFRPFA_					0	0	0			REV__ENSG00000188620|ENST00000357878|HMX3	REV__ENSG00000188620|ENST00000357878|HMX3	MSMS	A375_MHC_IP_R2	2	524.4458618164062	2	524.284734	1046.55492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.196	1	20.807	20.307	21.307	0.61029								0	0	0	0.15486	1	6267	6267		2.3027	0	1		+		3552	22101	2297	2336	3461	3461					0.03350064168489553
APIFGKKA	8	Unmodified	_APIFGKKA_					0	0	0		ENSG00000226479|ENST00000426077|TMEM185B	ENSG00000226479|ENST00000426077|TMEM185B	ENSG00000226479|ENST00000426077|TMEM185B	MSMS	A375_MHC_IP_R1	1	416.2788391113281	2	416.257988	830.501424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.399	1	24.399	23.899	24.899	0								0	0	0	0.16876	1	6920	6920		5.7604	1.4312	1				3553	9705	2298	2337	3462	3462					0.07939311456607356
APITPGNENT	10	Unmodified	_APITPGNENT_					0	0	0		tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	507.6475830078125	2	507.248546	1012.48254	-0.56444	-0.00028631	-0.51125	-0.00025933	-1.0757	-0.00054564	507.2481634393242	85.754	0.96602	86.49	86.137	87.103	0.73601					50	18	4	0	0	0	0.71118	1	32796	32796		7.2892	0	1	22327000			3554	29975	2299	2338	3463	3463					-0.023203146957712306
APITRAVYTA	10	Unmodified	_APITRAVYTA_					0	0	0		ENST00000486940.2_1_13:46090326-46105393:+|nuORF	ENST00000486940.2_1_13:46090326-46105393:+|nuORF	ENST00000486940.2_1_13:46090326-46105393:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	354.907470703125	3	354.869591	1061.58694	-0.38977	-0.00013832	0.2778	9.8584E-05	-0.11197	-3.9735E-05	354.8697280500252	39.051	0.56143	39.825	39.658	40.219	0.77451					13	10	2	0	0	0	0.71364	1	14346	14346		6.1918	0.40842	1	1104600			3555	12589	2300	2339	3464	3464					0.058614318515992636
APKFRRPLPQA	11	Unmodified	_APKFRRPLPQA_					0	0	0			REV__ENST00000529840.5_1_11:71189446-71191828:+|nuORF	REV__ENST00000529840.5_1_11:71189446-71191828:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	427.6477966308594	3	427.591051	1279.75132	-0.22512	-9.6259E-05	-0.047365	-2.0253E-05	-0.27249	-0.00011651	427.5911205728836	27.571	0.35366	27.571	27.381	27.735	0					11	6	3	0	0	0	0.73472	1	8435	8435		4.4062	0	1	1376500	+		3556	25829	2301	2340	3465	3465					0.12263869062235244
APKFRRPLPQA	11	Unmodified	_APKFRRPLPQA_					0	0	0			REV__ENST00000529840.5_1_11:71189446-71191828:+|nuORF	REV__ENST00000529840.5_1_11:71189446-71191828:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	427.591051	1279.75132	-0.22512	-9.6259E-05	-0.047365	-2.0253E-05	-0.27249	-0.00011651	427.5911205728836	27.571	0.35366	27.571	27.381	27.735	0	0.167	0.00053561	NaN	4.4062	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1376500	+		3557	25829	2301	2340							0.12263869062235244
APKFRRPLPQA	11	Unmodified	_APKFRRPLPQA_					0	0	0			REV__ENST00000529840.5_1_11:71189446-71191828:+|nuORF	REV__ENST00000529840.5_1_11:71189446-71191828:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	427.591051	1279.75132	-0.53697	-0.0002296	-0.58457	-0.00024996	-1.1215	-0.00047956	427.59079556548164	26.577	0.35622	27.237	27.161	27.517	0.65992	-0.167	-0.0001535	NaN	4.4062	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2334100	+		3558	25829	2301	2340							0.12263869062235244
APKGALIFGW	10	Unmodified	_APKGALIFGW_					0	0	0			REV__ENST00000591843.1_1_19:13255226-13260604:-|nuORF	REV__ENST00000591843.1_1_19:13255226-13260604:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	353.63421630859375	3	353.871044	1058.5913	-0.87334	-0.00030905	-2.9489	-0.0010435	-3.8223	-0.0013526	353.8702866217113	37.094	0.45592	37.865	37.564	38.02	0.7709					11	8	2	0	0	0	0.91556	1	13544	13544		8.9762	0.53194	1	803000	+		3559	26447	2302	2341	3466	3466					0.0643494106518574
APKGALIFGW	10	Unmodified	_APKGALIFGW_					0	0	0			REV__ENST00000591843.1_1_19:13255226-13260604:-|nuORF	REV__ENST00000591843.1_1_19:13255226-13260604:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	353.871044	1058.5913	-0.35727	-0.00012643	-3.6229	-0.001282	-3.9801	-0.0014085	353.86963953262295	38.063	0.25445	38.063	37.964	38.218	0	0.098732	-0.0001347	NaN	8.9762	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	576380	+		3560	26447	2302	2341							0.0643494106518574
APKKGRKVHTQ	11	Unmodified	_APKKGRKVHTQ_					0	0	0		ENST00000542104.5_2_12:65090023-65090110:+|nuORF	ENST00000542104.5_2_12:65090023-65090110:+|nuORF	ENST00000542104.5_2_12:65090023-65090110:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1250.1494140625	1	1249.74876	1248.74149	-0.36813	-0.00046007	0.57529	0.00071897	0.20716	0.0002589	1249.7491464384436	149.48	1.6443	149.48	148.16	149.81	0					101	39	4	0	0	0	0.73906	1	56986	56986		0.26902	0.26902	1	470680			3561	13294	2303	2342	3467	3467					0.12706681056829439
APKKGRKVHTQ	11	Unmodified	_APKKGRKVHTQ_					0	0	0		ENST00000542104.5_2_12:65090023-65090110:+|nuORF	ENST00000542104.5_2_12:65090023-65090110:+|nuORF	ENST00000542104.5_2_12:65090023-65090110:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1250.148681640625	1	1249.74876	1248.74149	0.44014	0.00055006	-0.15977	-0.00019967	0.28037	0.00035039	1249.7482334697547	149.42	1.7645	149.44	148.11	149.88	0.01825					131	54	3	0	0	0	0.73906	1	58087	58087		0.26902	0.26902	1	491650			3562	13294	2303	2342	3468	3468					0.12706681056829439
APKLIFKRS	9	Unmodified	_APKLIFKRS_					0	0	0			REV__nc|ENSG00000078018|P11137-3|MAP2	REV__nc|ENSG00000078018|P11137-3|MAP2	MULTI-MSMS	A375_MHC_IP_R1	1	353.9498291015625	3	353.89396	1058.66005	-0.08789	-3.1104E-05	-0.10952	-3.8759E-05	-0.19741	-6.9863E-05	353.8938816598435	24.882	0.35534	24.882	24.749	25.104	0					10	6	3	0	0	0	0.69884	1	7159	7159		7.1017	0.47135	1	4543200	+		3563	16701	2304	2343	3469	3469					0.13306605364869029
APKLQFQVP	9	Unmodified	_APKLQFQVP_					0	0	0		ENSG00000120899|ENST00000346049|PTK2B;PTK2B|p.D926Ffs*52|1|0.3|ENSG00000120899|chr8:27454572-27454573|-/TTTGTGACTAACATTTCCAGAATATGGACTTTATG|frameshift_variant	ENSG00000120899|ENST00000346049|PTK2B	ENSG00000120899|ENST00000346049|PTK2B	MSMS	A375_MHC_IP_R1	1	514.1669921875	2	514.300384	1026.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.342	1	55.342	54.842	55.842	0								0	0	0	0.1521	1	19790	19790		18.135	1.0221	1				3564	3695	2305	2344	3470	3470					0.07398637202550162
APKNKLEVI	9	Unmodified	_APKNKLEVI_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	A375_MHC_IP_R2	2	506.8450927734375	2	506.313492	1010.61243	-0.69631	-0.00035255	-0.70028	-0.00035456	-1.3966	-0.00070712	506.3133299067568	83.387	1.8815	84.127	83.344	85.225	0.73962					111	36	4	0	0	0	0.41409	1	32034	32034		24.021	5.8742	1	100580000	+		3565	18422	2306	2345	3471	3471					0.1075490637402936
APLEARRRNTV	11	Unmodified	_APLEARRRNTV_					0	0	0			REV__ENST00000220812.2_1_8:42234649-42234682:-|nuORF	REV__ENST00000220812.2_1_8:42234649-42234682:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	642.2698974609375	2	641.87056	1281.72657	-0.53746	-0.00034498	-0.42069	-0.00027003	-0.95815	-0.00061501	641.8704391757353	142.98	0.50449	143.01	142.69	143.19	0.030731					16	9	2	0	0	0	0.99985	1	55867	55867		2.7352	0	1	1607500	+		3566	23051	2307	2346	3472	3472					0.09697189188818811
APLFFPRLQQQ	11	Unmodified	_APLFFPRLQQQ_					0	0	0		ENST00000404334.1_1_22:25595840-25599741:+|nuORF	ENST00000404334.1_1_22:25595840-25599741:+|nuORF	ENST00000404334.1_1_22:25595840-25599741:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	673.2738037109375	2	672.874779	1343.73501	-0.70582	-0.00047493	0.43463	0.00029245	-0.27119	-0.00018248	672.8753532891656	103.35	0.866	104.12	103.58	104.45	0.76428					22	16	2	0	0	0	0.95991	1	39129	39129		13.042	0	1	3853700			3567	11582	2308	2347	3473	3473					0.07688743105472895
APLLRGQKR	9	Unmodified	_APLLRGQKR_					0	0	0			REV__nc|ENSG00000170983|Q96KT6|LINC00208	REV__nc|ENSG00000170983|Q96KT6|LINC00208	MSMS	A375_MHC_IP_R2	2	519.7377319335938	2	519.830175	1037.6458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.555	1	82.298	81.798	82.798	0.74293								0	0	0	0.15486	1	30972	30972		4.756	1.1595	1		+		3568	27354	2309	2348	3474	3474					0.12847952936590445
APLLRTYI	8	Unmodified	_APLLRTYI_					0	0	0			REV__nc|ENSG00000243989|Q03154-2|ACY1	REV__nc|ENSG00000243989|Q03154-2|ACY1	MULTI-SECPEP	A375_MHC_IP_R2	2	474.552978515625	2	473.789653	945.564752	-0.59067	-0.00027985	0.64131	0.00030384	0.050635	2.399E-05	473.78974240506324	82.301	0.20337	83.044	82.889	83.093	0.74293					5	3	2	0	0	0	0.96296	1	31231	31231		15.768	11.012	1	290910	+		3569	22816	2310	2349	3475	3475					0.08979252173821806
APLNLGIKDLK	11	Unmodified	_APLNLGIKDLK_					0	0	0			REV__nc|ENSG00000087510|Q92754-2|TFAP2C	REV__nc|ENSG00000087510|Q92754-2|TFAP2C	MULTI-SECPEP	A375_MHC_IP_R1	1	394.157958984375	3	394.579929	1180.71796	0.59678	0.00023548	-0.70022	-0.00027629	-0.10344	-4.0816E-05	394.57957318302454	44.865	0.25199	44.865	44.676	44.928	0					6	4	2	0	0	0	0.94804	1	15690	15690		18.34	10.863	1	767320	+		3570	16874	2311	2350	3476	3476					0.1348282249962267
APLQVSDPQLR	11	Unmodified	_APLQVSDPQLR_					0	0	0			REV__ENST00000271357.9_1_1:168066332-168073966:-|nuORF	REV__ENST00000271357.9_1_1:168066332-168073966:-|nuORF	MSMS	A375_MHC_IP_R2	2	408.2937316894531	3	408.562938	1222.66699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.151	1	29.849	29.349	30.349	0.69872								0	0	0	0.16157	1	10156	10156		10.527	0.76322	1		+		3571	23274	2312	2351	3477	3477					0.06455873454797256
APLVHLAEREL	11	Unmodified	_APLVHLAEREL_					0	0	0		ENST00000590307.1_1_18:77636237-77659813:+|nuORF;ENSG00000178342|ENST00000316249|KCNG2	ENST00000590307.1_1_18:77636237-77659813:+|nuORF	ENST00000590307.1_1_18:77636237-77659813:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	624.63623046875	2	624.358962	1246.70337	-0.7954	-0.00049661	0.48908	0.00030536	-0.30632	-0.00019125	624.3592099830556	67.089	0.97043	67.089	66.632	67.603	0					49	18	4	0	0	0	0.69069	1	24251	24251		26.268	0	1	16530000			3572	8153	2313	2352	3478	3478					0.08988750351522867
APLVTPPLK	9	Unmodified	_APLVTPPLK_					0	0	0		TDRKH|p.P255L|1|0.36|ENSG00000182134|chr1:151778804-151778804|G/A|missense_variant	TDRKH|p.P255L|1|0.36|ENSG00000182134|chr1:151778804-151778804|G/A|missense_variant	TDRKH|p.P255L|1|0.36|ENSG00000182134|chr1:151778804-151778804|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	468.6998291015625	2	468.299853	934.585153	-0.64065	-0.00030002	0.53373	0.00024994	-0.10692	-5.0072E-05	468.30015141970273	127.34	0.1515	127.6	127.51	127.66	0.26592					4	2	2	0	0	0	0.5339	1	49961	49961		18.135	1.1927	1	6228300			3573	29316	2314	2353	3479	3479					0.11524422833667813
APLWDYWL	8	Unmodified	_APLWDYWL_					0	0	0			REV__ENST00000555918.1_1_14:36295434-36295554:-|nuORF	REV__ENST00000555918.1_1_14:36295434-36295554:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	355.4600524902344	3	355.179766	1062.51747	-0.46889	-0.00016654	-0.80979	-0.00028762	-1.2787	-0.00045416	355.17938077416244	38.945	0.61462	39.719	39.351	39.965	0.77451					30	11	4	0	0	0	0.77686	1	14388	14388		4.3292	1.334	1	16132000	+		3574	26101	2315	2354	3480	3480					-0.011290270971585414
APNKGGLE	8	Unmodified	_APNKGGLE_					0	0	0			REV__ENST00000349305.8_1_6:135239555-135263608:-|nuORF	REV__ENST00000349305.8_1_6:135239555-135263608:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	393.61090087890625	2	393.211235	784.407917	0.21481	8.4466E-05	-0.78147	-0.00030728	-0.56666	-0.00022282	393.2108539262022	105.87	0.4063	105.87	105.7	106.11	0					11	7	2	0	0	0	0.7779	1	38894	38894		2.5775	0	1	1689400	+		3575	18046	2316	2355	3481	3481					0.007089672835036254
APPAAFGG	8	Unmodified	_APPAAFGG_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-SECPEP	A375_MHC_IP_R1	1	688.0574951171875	1	687.346052	686.338775	-0.56739	-0.00039	0.77819	0.00053488	0.21079	0.00014489	687.3466233743649	81.746	0.91084	81.746	81.202	82.113	0					25	17	2	0	0	0	0.972	1	29790	29790		2.8892	0	1	2443900			3576	14845	2317	2356	3482	3482					-0.016940719453714337
APPAPPYDAPV	11	Unmodified	_APPAPPYDAPV_					0	0	0			REV__ENSG00000163874|ENST00000373087|ZC3H12A	REV__ENSG00000163874|ENST00000373087|ZC3H12A	MULTI-SECPEP	A375_MHC_IP_R1	1	1093.9205322265625	1	1094.55169	1093.54441	0.070579	7.7252E-05	-3.0545	-0.0033433	-2.9839	-0.0032661	1094.547753723743	75.816	0.25239	75.816	75.714	75.966	0					7	4	2	0	0	0	0.97871	1	27666	27666		15.847	0	1	1356800	+		3577	20423	2318	2357	3483	3483					0.0013803672336507589
APPARFPL	8	Unmodified	_APPARFPL_					0	0	0			REV__ENSG00000125430|ENST00000360954|HS3ST3B1	REV__ENSG00000125430|ENST00000360954|HS3ST3B1	MULTI-MSMS	A375_MHC_IP_R1	1	434.6744689941406	2	434.755613	867.496673	-0.57307	-0.00024914	1.7015	0.00073976	1.1285	0.00049061	434.756177271681	67.905	0.35427	67.905	67.804	68.159	0					9	6	2	0	0	0	0.7338	1	24668	24668		24.674	0	1	442290	+		3578	18341	2319	2358	3484	3484					0.05762427313857188
APPARFPL	8	Unmodified	_APPARFPL_					0	0	0			REV__ENSG00000125430|ENST00000360954|HS3ST3B1	REV__ENSG00000125430|ENST00000360954|HS3ST3B1	MSMS	A375_MHC_IP_R2	2	434.6746826171875	2	434.755613	867.496673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.963	1	67.7	67.2	68.2	0.73631								0	0	0	0.16876	1	25369	25369		19.439	0	1		+		3579	18341	2319	2358	3485	3485					0.05762427313857188
APPAVPKP	8	Unmodified	_APPAVPKP_					0	0	0			REV__nc|ENSG00000100722|Q6PJT7-3|ZC3H14	REV__nc|ENSG00000100722|Q6PJT7-3|ZC3H14	MSMS	A375_MHC_IP_R2	2	388.63311767578125	2	388.736889	775.459225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.697	1	58.446	57.946	58.946	0.74894								0	0	0	0.16876	1	21819	21819		2.8892	0	1		+		3580	27145	2320	2359	3486	3486					0.06251336048239864
APPDAPARPAV	11	Unmodified	_APPDAPARPAV_					0	0	0		ENSG00000272636|ENST00000613549|DOC2B	ENSG00000272636|ENST00000613549|DOC2B	ENSG00000272636|ENST00000613549|DOC2B	MULTI-MSMS	A375_MHC_IP_R1	1	354.61358642578125	3	354.529458	1060.56654	0.024817	8.7982E-06	-0.24334	-8.6272E-05	-0.21853	-7.7474E-05	354.5293634227307	39.352	0.71033	39.352	38.882	39.592	0					25	13	3	0	0	0	0.65918	1	13446	13446		18.721	6.4936	1	11035000			3581	9993	2321	2360	3487	3487					0.03868261191792044
APPDAPARPAV	11	Unmodified	_APPDAPARPAV_					0	0	0		ENSG00000272636|ENST00000613549|DOC2B	ENSG00000272636|ENST00000613549|DOC2B	ENSG00000272636|ENST00000613549|DOC2B	MULTI-MSMS	A375_MHC_IP_R2	2	354.9291076660156	3	354.529458	1060.56654	-0.60907	-0.00021593	-0.25215	-8.9395E-05	-0.86122	-0.00030533	354.5294119549017	38.444	0.45531	39.218	38.946	39.401	0.77451					22	8	3	0	0	0	0.65918	1	14138	14138		18.721	7.8223	1	12878000			3582	9993	2321	2360	3488	3488					0.03868261191792044
APPEEMPP	8	Unmodified	_APPEEMPP_					0	0	0		ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11;ANKRD11|p.L2160F|1|0.22|ENSG00000167522|chr16:89280064-89280064|G/A|missense_variant	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MSMS	A375_MHC_IP_R1	1	434.14202880859375	2	434.199479	866.384405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.819	1	38.819	38.319	39.319	0								0	0	0	0.16876	1	13203	13203		17.087	5.9721	1				3583	7188	2322	2361	3489	3489					-0.054132145453195335
APPEPLQL	8	Unmodified	_APPEPLQL_					0	0	0			REV__ENST00000503498.1_1_3:129133914-129140362:-|nuORF	REV__ENST00000503498.1_1_3:129133914-129140362:-|nuORF	MSMS	A375_MHC_IP_R2	2	432.6580810546875	2	432.744911	863.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.462	1	37.233	36.733	37.733	0.7709								0	0	0	0.16876	1	13295	13295		10.183	0	1		+		3584	21169	2323	2362	3490	3490					0.03806997494461939
APPHGLPA	8	Unmodified	_APPHGLPA_					0	0	0			REV__ENST00000331203.6_1_2:112896141-112922743:+|nuORF	REV__ENST00000331203.6_1_2:112896141-112922743:+|nuORF	MSMS	A375_MHC_IP_R1	1	380.2680969238281	2	380.211038	758.407523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.737	1	28.737	28.237	29.237	0								0	0	0	0.16832	1	8906	8906		41.817	9.3636	1		+		3585	23629	2324	2363	3491	3491					0.018655923543178687
APPIHKKRKRP	11	Unmodified	_APPIHKKRKRP_					0	0	0			REV__nc|ENSG00000166006|Q96PR1-3|KCNC2	REV__nc|ENSG00000166006|Q96PR1-3|KCNC2	MSMS	A375_MHC_IP_R1	1	664.489013671875	2	664.425305	1326.83606	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.388	1	92.388	91.888	92.888	0								0	0	0	0.1629	1	33954	33954		3.5965	0.31518	1		+		3586	20643	2325	2364	3492	3492					0.1857123959882756
APPPLQWF	8	Unmodified	_APPPLQWF_					0	0	0			REV__PLAGL1|p.G385D|1|0.25|ENSG00000118495|chr6:143941662-143941662|C/T|missense_variant	REV__PLAGL1|p.G385D|1|0.25|ENSG00000118495|chr6:143941662-143941662|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	478.6544494628906	2	478.255446	954.496338	-0.6303	-0.00030144	-1.6435	-0.00078603	-2.2738	-0.0010875	478.25487521773084	55.562	0.60978	56.312	56.084	56.694	0.75075					20	11	2	0	0	0	0.77488	1	21022	21022		13.508	0	1	3388800	+		3587	18043	2326	2365	3493	3493					0.017270075939904928
APPPPLFDA	9	Unmodified	_APPPPLFDA_					0	0	0		ENSG00000261221|ENST00000568956|ZNF865	ENSG00000261221|ENST00000568956|ZNF865	ENSG00000261221|ENST00000568956|ZNF865	MULTI-SECPEP	A375_MHC_IP_R1	1	923.6962890625	1	924.482545	923.475269	-0.13794	-0.00012753	-0.27014	-0.00024974	-0.40808	-0.00037726	924.4821601239332	58.841	0.40786	58.841	58.633	59.041	0					12	7	2	0	0	0	0.80005	1	21169	21169		4.756	0	1	1045500			3588	9936	2327	2366	3494	3494					0.010469974944612659
APPPPPYM	8	Unmodified	_APPPPPYM_					0	0	0			REV__ENSG00000106299|ENST00000223023|WASL	REV__ENSG00000106299|ENST00000223023|WASL	MSMS	A375_MHC_IP_R1	1	435.282470703125	2	435.214932	868.415311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.573	1	37.573	37.073	38.073	0								0	0	0	0.16876	1	12677	12677		17.087	2.5049	1		+		3589	17439	2328	2367	3495	3495					-0.02416016440417934
APPPPQGDS	9	Unmodified	_APPPPQGDS_					0	0	0			REV__nc|ENSG00000144331|Q569K4-5|ZNF385B	REV__nc|ENSG00000144331|Q569K4-5|ZNF385B	MSMS	A375_MHC_IP_R2	2	433.2850036621094	2	433.20615	864.397747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.278	1	54.029	53.529	54.529	0.75105								0	0	0	0.15486	1	20101	20101		9.3474	0	1		+		3590	19418	2329	2368	3496	3496					-0.039876404417100275
APPPVADQA	9	Unmodified	_APPPVADQA_					0	0	0		ENSG00000187678|ENST00000434127|SPRY4	ENSG00000187678|ENST00000434127|SPRY4	ENSG00000187678|ENST00000434127|SPRY4	MSMS	A375_MHC_IP_R2	2	433.2852478027344	2	433.224342	864.434132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.764	1	41.539	41.039	42.039	0.77451								0	0	0	0.15427	1	15105	15105		14.582	0	1				3591	8848	2330	2369	3497	3497					-0.003507635450091584
APPQAQLMQQ	10	Unmodified	_APPQAQLMQQ_					0	0	0			REV__ENSG00000142599|ENST00000400908|RERE	REV__ENSG00000142599|ENST00000400908|RERE	MULTI-SECPEP	A375_MHC_IP_R2	2	371.9571838378906	3	371.190336	1110.54918	0.38028	0.00014116	-1.0786	-0.00040038	-0.69835	-0.00025922	371.18988165799095	31.568	0.50966	32.298	32.088	32.597	0.72959					15	9	2	0	0	0	0.94516	1	11194	11194		1.7423	1.7423	1	879350	+		3592	19313	2331	2370	3498	3498					-0.0016740240553190233
APPQQSAAPV	10	Unmodified	_APPQQSAAPV_					0	0	0			REV__ENSG00000204612|ENST00000376708|FOXB2	REV__ENSG00000204612|ENST00000376708|FOXB2	MULTI-SECPEP	A375_MHC_IP_R1	1	482.666259765625	2	483.256174	964.497795	-0.32042	-0.00015485	-2.4233	-0.0011711	-2.7437	-0.0013259	483.25518058154233	61.661	0.40733	61.661	61.432	61.839	0					12	7	3	0	0	0	0.74754	1	22184	22184		12.241	0	1	2163400	+		3593	22530	2332	2371	3499	3499					0.014125968920893683
APPRLTASA	9	Unmodified	_APPRLTASA_					0	0	0		SVA_D_dup1229|chr17:30522805-30524227:+|1.105592693116747|0.476847412502663|1.21|471.0|25|3|sense	SVA_D_dup1229|chr17:30522805-30524227:+|1.105592693116747|0.476847412502663|1.21|471.0|25|3|sense	SVA_D_dup1229|chr17:30522805-30524227:+|1.105592693116747|0.476847412502663|1.21|471.0|25|3|sense	MULTI-MSMS	A375_MHC_IP_R2	2	442.6533203125	2	442.253434	882.492316	-0.47805	-0.00021142	0.34135	0.00015096	-0.13669	-6.0454E-05	442.2535447611578	40.573	1.1176	41.347	40.777	41.895	0.77451					56	21	4	0	0	0	0.094655	1	14971	14971		51.63	5.8899	1	57654000			3594	29272	2333	2372	3500	3500					0.04636918100254661
APPRRKYKE	9	Unmodified	_APPRRKYKE_					0	0	0			REV__ENSG00000104356|ENST00000401707|POP1	REV__ENSG00000104356|ENST00000401707|POP1	MULTI-MSMS	A375_MHC_IP_R1	1	382.2577209472656	3	382.224368	1143.65128	0.2107	8.0535E-05	0.64048	0.00024481	0.85119	0.00032534	382.2245601441056	24.572	0.55597	24.572	24.296	24.852	0					14	10	2	0	0	0	0.62591	1	7066	7066		13.615	6.0059	1	6728700	+		3595	17317	2334	2373	3501	3501					0.0851963172840442
APPTAAPLQRR	11	Unmodified	_APPTAAPLQRR_					0	0	0		nc|ENSG00000154928|P54762-6|EPHB1	nc|ENSG00000154928|P54762-6|EPHB1	nc|ENSG00000154928|P54762-6|EPHB1	MULTI-MSMS	A375_MHC_IP_R1	1	589.7431030273438	2	589.343646	1176.67274	-0.018495	-1.09E-05	-1.0249	-0.000604	-1.0434	-0.0006149	589.3429110765745	127.95	2.075	127.95	126.41	128.48	0					137	40	5	0	0	0	0.7362	1	48752	48752		2.9952	0.26005	1	265560000			3596	14691	2335	2374	3502	3502					0.09147016757128767
APPTAAPLQRR	11	Unmodified	_APPTAAPLQRR_					0	0	0		nc|ENSG00000154928|P54762-6|EPHB1	nc|ENSG00000154928|P54762-6|EPHB1	nc|ENSG00000154928|P54762-6|EPHB1	MULTI-MSMS	A375_MHC_IP_R2	2	589.743896484375	2	589.343646	1176.67274	-0.58738	-0.00034617	-0.8852	-0.00052169	-1.4726	-0.00086786	589.3430001848916	127.47	2.0758	127.73	126.45	128.53	0.26593					163	40	5	0	0	0	0.73378	1	49724	49724		5.2969	2.5617	1	422840000			3597	14691	2335	2374	3503	3503					0.09147016757128767
APPTIISSGSM	11	Unmodified	_APPTIISSGSM_					0	0	0		nc|ENSG00000118257|O60462-2|NRP2;ENSG00000118257|ENST00000357785|NRP2;nc|ENSG00000118257|O60462|NRP2;nc|ENSG00000118257|O60462-4|NRP2;nc|ENSG00000118257|O60462-5|NRP2;nc|ENSG00000118257|O60462-6|NRP2	nc|ENSG00000118257|O60462-2|NRP2	nc|ENSG00000118257|O60462-2|NRP2	MSMS	A375_MHC_IP_R2	2	354.281494140625	3	354.182959	1059.52705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.289	1	42.064	41.564	42.564	0.77451								0	0	0	0.16258	1	15315	15315		2.4348	0	1				3598	3534	2336	2375	3504	3504					-0.00033626873914727184
APPTRRTA	8	Unmodified	_APPTRRTA_					0	0	0			REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF	REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	435.65142822265625	2	435.251226	868.487899	-0.041176	-1.7922E-05	0.2438	0.00010612	0.20263	8.8194E-05	435.2512280958006	104.22	6.8161	104.22	102.61	109.42	0					311	133	3	0	0	0	0.7779	2	38248	38248;38492		2.5775	0	1	16984000	+		3599	24079	2337	2376	3505;3506	3505					0.04839453677379879
APPTRRTA	8	Unmodified	_APPTRRTA_					0	0	0			REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF	REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	435.281982421875	2	435.251226	868.487899	-0.3118	-0.00013571	0.0015902	6.9213E-07	-0.31021	-0.00013502	435.2511447455881	106.59	3.868	107.35	106.63	110.5	0.75977					134	75	2	0	0	0	0.7779	2	40162	40162;40584		2.5775	0	1	14524000	+		3600	24079	2337	2376	3507;3508	3507					0.04839453677379879
APPVHAPA	8	Unmodified	_APPVHAPA_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A;REV__ENST00000583079.1_1_17:18023566-18025792:+|nuORF	REV__ENSG00000091536|ENST00000647165|MYO15A	MSMS	A375_MHC_IP_R1	1	380.2644348144531	2	380.211038	758.407523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.879	1	28.879	28.379	29.379	0								0	0	0	0.16876	1	8964	8964		32.454	0	1		+		3601	16952;26361	2338	2377	3509	3509					0.018655923543178687
APQHVPWLL	9	Unmodified	_APQHVPWLL_					0	0	0			REV__chr15:31070226-31076905|404|262.31|0.22|10.22|-|0|TRPM1,TRPM1|3	REV__chr15:31070226-31076905|404|262.31|0.22|10.22|-|0|TRPM1,TRPM1|3	MULTI-SECPEP	A375_MHC_IP_R1	1	354.280517578125	3	354.202793	1059.58655	-0.022099	-7.8274E-06	-0.7525	-0.00026654	-0.7746	-0.00027436	354.20240904878557	33.504	0.75994	33.504	33.19	33.95	0					26	14	3	0	0	0	0.71341	1	11003	11003		5.2969	1.1074	1	3576300	+		3602	15709	2339	2378	3510	3510					0.059140569224155115
APQPPRPPPE	10	Unmodified	_APQPPRPPPE_					0	0	0			REV__nc|ENSG00000061938|Q07912-3|TNK2	REV__nc|ENSG00000061938|Q07912-3|TNK2	MULTI-SECPEP	A375_MHC_IP_R1	1	363.2815856933594	3	362.529458	1084.56654	0.057044	2.068E-05	-0.46598	-0.00016893	-0.40893	-0.00014825	362.5292694643653	27.204	0.45488	27.204	27.027	27.482	0					12	8	2	0	0	0	0.74754	1	8286	8286		19.626	0.90473	1	2810400	+		3603	16453	2340	2379	3511	3511					0.027642611918054172
APQYYDEYV	9	Unmodified	_APQYYDEYV_					0	0	0		nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENSG00000101745|ENST00000262126|ANKRD12	nc|ENSG00000101745|Q6UB98-2|ANKRD12	nc|ENSG00000101745|Q6UB98-2|ANKRD12	MULTI-SECPEP	A375_MHC_IP_R1	1	574.6146850585938	2	574.250754	1146.48696	-0.4177	-0.00023986	-0.13988	-8.0324E-05	-0.55758	-0.00032019	574.2503953330742	85.125	0.86706	85.125	84.697	85.565	0					39	16	4	0	0	0	0.3213	1	31116	31116		37.974	12.575	1	6644100			3604	2319	2341	2380	3512	3512					-0.08042850272886426
APREEKERE	9	Unmodified	_APREEKERE_					0	0	0		nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123170580-123298708:-|nuORF	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	MULTI-MSMS	A375_MHC_IP_R2	2	1144.7681884765625	1	1143.57528	1142.568	0.3303	0.00037772	-1.1936	-0.001365	-0.86334	-0.00098729	1143.575518379133	140.59	0.40742	140.63	140.5	140.91	0.04216					9	7	2	0	0	0	0.70307	1	55056	55056		6.7232	1.8262	1	620740			3605	4830	2342	2381	3513	3513					0.002418504899196705
APRPGWAL	8	Unmodified	_APRPGWAL_					0	0	0		ENST00000475696.5_1_2:220110217-220110445:+|nuORF	ENST00000475696.5_1_2:220110217-220110445:+|nuORF	ENST00000475696.5_1_2:220110217-220110445:+|nuORF	MSMS	A375_MHC_IP_R1	1	434.1419372558594	2	434.245412	866.476272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.165	1	41.165	40.665	41.665	0								0	0	0	0.16876	1	14197	14197		17.087	1.3183	1				3606	12425	2343	2382	3514	3514					0.03769256654027231
APRRRKMSRRR	11	Unmodified	_APRRRKMSRRR_					0	0	0			REV__ENST00000358939.8_1_15:65809863-65809971:-|nuORF	REV__ENST00000358939.8_1_15:65809863-65809971:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	735.84326171875	2	735.444569	1468.87458	-0.63367	-0.00046603	-0.80274	-0.00059037	-1.4364	-0.0010564	735.4435258013463	148.99	2.0797	149.01	147.81	149.89	0.018707					215	69	4	0	0	0	0.73897	1	57961	57961		0.35063	0.043601	1	1230700	+		3607	23868	2344	2383	3515	3515					0.15890221961694806
APRVRRRK	8	Unmodified	_APRVRRRK_					0	0	0		ENST00000592087.1_1_19:36980552-36981209:+|nuORF	ENST00000592087.1_1_19:36980552-36981209:+|nuORF	ENST00000592087.1_1_19:36980552-36981209:+|nuORF	MSMS	A375_MHC_IP_R2	2	519.8829956054688	2	519.841408	1037.66826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.692	1	82.435	81.935	82.935	0.74293								0	0	0	0.16876	1	31027	31027		5.2307	0.90143	1				3608	13808	2345	2384	3516	3516					0.15093597124882763
APSDPNRRK	9	Unmodified	_APSDPNRRK_					0	0	0			REV__ENST00000477040.1_1_1:36921391-36921985:-|nuORF	REV__ENST00000477040.1_1_1:36921391-36921985:-|nuORF	MSMS	A375_MHC_IP_R2	2	520.8648071289062	2	520.783422	1039.55229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.933	1	19.536	19.036	20.036	0.60308								0	0	0	0.15486	1	5678	5678		7.9102	0.62092	1		+		3609	17979	2346	2385	3517	3517					0.03409608763513461
APSDTVALV	9	Unmodified	_APSDTVALV_					0	0	0			REV__ENST00000531756.5_1_11:74862426-74914042:+|nuORF	REV__ENST00000531756.5_1_11:74862426-74914042:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	437.13958740234375	2	436.739825	871.465098	-0.24175	-0.00010558	-0.38449	-0.00016792	-0.62624	-0.00027351	436.739590858334	83.664	0.66495	84.404	83.998	84.663	0.73962					29	12	3	0	0	0	0.14105	1	31724	31724		60.39	22.416	1	6504500	+		3610	19011	2347	2386	3518	3518					0.024223897692309038
APSGSQGVL	9	Unmodified	_APSGSQGVL_					0	0	0		nc|ENSG00000221978|Q96S94-5|CCNL2;nc|ENSG00000221978|Q96S94-2|CCNL2;nc|ENSG00000221978|Q96S94-4|CCNL2;ENSG00000221978|ENST00000400809|CCNL2	nc|ENSG00000221978|Q96S94-5|CCNL2	nc|ENSG00000221978|Q96S94-5|CCNL2	MULTI-MSMS	A375_MHC_IP_R1	1	408.6164855957031	2	408.216517	814.418482	-0.12763	-5.21E-05	0.34218	0.00013969	0.21456	8.7585E-05	408.21662167297774	37.633	1.1748	37.633	37.351	38.526	0					55	22	4	0	0	0	0.026461	1	12664	12664		77.984	3.0553	1	71707000			3611	9677	2348	2387	3519	3519					0.003849499379612098
APSHKLQQLF	10	Unmodified	_APSHKLQQLF_					0	0	0			REV__MER49_dup1305|chr21:41210187-41211078:+|3.35816670135563|0.4412608656295442|2.93|472.0|5|1|sense	REV__MER49_dup1305|chr21:41210187-41211078:+|3.35816670135563|0.4412608656295442|2.93|472.0|5|1|sense	MULTI-MSMS	A375_MHC_IP_R1	1	390.62054443359375	3	390.220624	1167.64004	0.18689	7.2928E-05	-0.29093	-0.00011353	-0.10404	-4.0597E-05	390.2204856157361	63.729	0.51241	63.729	63.477	63.99	0					13	9	2	0	0	0	0.71455	1	23087	23087		5.7834	0.38072	1	1585900	+		3612	27009	2349	2388	3520	3520					0.06292809634260266
APSHKLQQLF	10	Unmodified	_APSHKLQQLF_					0	0	0			REV__MER49_dup1305|chr21:41210187-41211078:+|3.35816670135563|0.4412608656295442|2.93|472.0|5|1|sense	REV__MER49_dup1305|chr21:41210187-41211078:+|3.35816670135563|0.4412608656295442|2.93|472.0|5|1|sense	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	390.220624	1167.64004	0.18689	7.2928E-05	-0.29093	-0.00011353	-0.10404	-4.0597E-05	390.2204856157361	63.729	0.51241	63.729	63.477	63.99	0	0	0	NaN	5.7834	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1585900	+		3613	27009	2349	2388							0.06292809634260266
APSQRHFE	8	Unmodified	_APSQRHFE_					0	0	0			REV__ENSG00000077943|ENST00000378076|ITGA8	REV__ENSG00000077943|ENST00000378076|ITGA8	MSMS	A375_MHC_IP_R2	2	486.1691589355469	2	486.238316	970.462078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.779	1	36.542	36.042	37.042	0.76338								0	0	0	0.16876	1	12993	12993		13.508	0	1		+		3614	16700	2350	2389	3521	3521					-0.024334405649028668
APSRAPAEGPL	11	Unmodified	_APSRAPAEGPL_					0	0	0		CCDC88B|p.S253L|1|0.26|ENSG00000168071|chr11:64342076-64342076|C/T|missense_variant	CCDC88B|p.S253L|1|0.26|ENSG00000168071|chr11:64342076-64342076|C/T|missense_variant	CCDC88B|p.S253L|1|0.26|ENSG00000168071|chr11:64342076-64342076|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	355.4598388671875	3	355.861096	1064.56146	-0.59062	-0.00021018	-1.2622	-0.00044916	-1.8528	-0.00065934	356.1944671079375	38.527	0.25312	39.302	39.2	39.453	0.77451					6	4	2	0	0	0	0.99133	1	14153	14153		5.8681	1.3393	1	457360			3615	321	2351	2390	3522	3522					0.031759573291765264
APSSFTESQL	10	Unmodified	_APSSFTESQL_					0	0	0			REV__AKAP6|p.S573F|1|0.28|ENSG00000151320|chr14:32546371-32546371|C/T|missense_variant	REV__AKAP6|p.S573F|1|0.28|ENSG00000151320|chr14:32546371-32546371|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	533.744384765625	2	533.756204	1065.49785	-0.48271	-0.00025765	0.29543	0.00015769	-0.18728	-9.9964E-05	533.7561177875498	78.595	0.65933	78.595	78.301	78.96	0					23	12	3	0	0	0	0.70146	2	28713	28713;28717		11.64	0.81637	1	2698800	+		3616	15350	2352	2391	3523;3524	3523					-0.03227447898552782
APSVKKRFW	9	Unmodified	_APSVKKRFW_					0	0	0			REV__ENSG00000124557|ENST00000684113|BTN1A1	REV__ENSG00000124557|ENST00000684113|BTN1A1	MULTI-SECPEP	A375_MHC_IP_R1	1	373.6328125	3	373.553826	1117.63965	0.52518	0.00019618	0.19608	7.3248E-05	0.72127	0.00026943	373.888376249743	37.452	0.30608	37.452	37.301	37.607	0					8	5	2	0	0	0	0.79683	1	12586	12586		2.9952	0	1	643320	+		3617	18312	2353	2392	3525	3525					0.08553434705095242
APSVQTLLII	10	Unmodified	_APSVQTLLII_					0	0	0			REV__ENSG00000175398|ENST00000309675|OR10P1	REV__ENSG00000175398|ENST00000309675|OR10P1	MULTI-SECPEP	A375_MHC_IP_R1	1	528.1375732421875	2	527.828975	1053.6434	-0.49918	-0.00026348	0.6837	0.00036088	0.18452	9.7397E-05	527.8293654161695	53.428	0.45698	53.428	53.301	53.758	0					14	8	2	0	0	0	0.91328	1	19129	19129		14.838	0	1	1871500	+		3618	21342	2354	2393	3526	3526					0.1187205968831222
APSVQTLLII	10	Unmodified	_APSVQTLLII_					0	0	0			REV__ENSG00000175398|ENST00000309675|OR10P1	REV__ENSG00000175398|ENST00000309675|OR10P1	MULTI-SECPEP	A375_MHC_IP_R2	2	528.137451171875	2	527.828975	1053.6434	-0.92648	-0.00048903	1.2048	0.00063594	0.27833	0.00014691	527.8295711569992	52.431	0.4544	53.183	52.983	53.437	0.75225					14	8	3	0	0	0	0.92603	1	19774	19774		10.074	1.9184	1	2102400	+		3619	21342	2354	2393	3527	3527					0.1187205968831222
APSWSGVCYLY	11	Unmodified	_APSWSGVCYLY_					0	0	0			REV__nc|ENSG00000167034|Q99801-3|NKX3-1	REV__nc|ENSG00000167034|Q99801-3|NKX3-1	MULTI-SECPEP	A375_MHC_IP_R2	2	623.714111328125	2	623.284074	1244.5536	-0.87165	-0.00054329	-0.3927	-0.00024477	-1.2644	-0.00078805	623.2840729524773	66.543	0.25589	67.279	67.189	67.445	0.73631					6	4	2	0	0	0	0.95991	1	25260	25260		8.7454	0	1	851320	+		3620	20726	2355	2394	3528	3528					-0.058899379825788856
APTFWDVSRAF	11	Unmodified	_APTFWDVSRAF_					0	0	0		ENST00000602477.1_1_1:9299915-9300071:+|nuORF	ENST00000602477.1_1_1:9299915-9300071:+|nuORF	ENST00000602477.1_1_1:9299915-9300071:+|nuORF	MSMS	A375_MHC_IP_R2	2	433.28515625	3	432.8839	1295.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.764	1	48.526	48.026	49.026	0.76128								0	0	0	0.1629	1	17921	17921		1.4551	0	1				3621	13883	2356	2395	3529	3529					-0.006117980909493781
APTGFGHTI	9	Unmodified	_APTGFGHTI_					0	0	0			REV__ENSG00000008197|ENST00000008391|TFAP2D	REV__ENSG00000008197|ENST00000008391|TFAP2D	MSMS	A375_MHC_IP_R1	1	450.69976806640625	2	450.732335	899.450116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.929	1	42.929	42.429	43.429	0								0	0	0	0.14812	1	14897	14897		24.674	2.2213	1		+		3622	16167	2357	2396	3530	3530					-0.0036305730808408043
APTGSDATF	9	Unmodified	_APTGSDATF_					0	0	0			REV__ENST00000562235.5_1_16:67262534-67263013:+|nuORF	REV__ENST00000562235.5_1_16:67262534-67263013:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	434.1419982910156	2	433.698158	865.381762	-0.052159	-2.2621E-05	-0.093367	-4.0493E-05	-0.14553	-6.3115E-05	433.69802339732246	42.461	0.35401	42.461	42.183	42.537	0					11	6	2	0	0	0	0.3243	1	14715	14715		36.044	10.645	1	1645500	+		3623	20878	2358	2397	3531	3531					-0.056313466786264144
APTLGAPHPD	10	Unmodified	_APTLGAPHPD_					0	0	0			REV__ENST00000457052.2_2_19:46265255-46265294:+|nuORF	REV__ENST00000457052.2_2_19:46265255-46265294:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	487.4794616699219	2	488.248349	974.482145	-0.27676	-0.00013513	-2.9565	-0.0014435	-3.2332	-0.0015786	488.24677353963347	43.867	0.96759	43.867	43.197	44.165	0					29	18	3	0	0	0	0.8125	1	15215	15215		8.7454	0	1	5370400	+		3624	24940	2359	2398	3532	3532					-0.0061168962496367385
APTPQSLW	8	Unmodified	_APTPQSLW_					0	0	0			REV__ENSG00000110777|ENST00000393067|POU2AF1	REV__ENSG00000110777|ENST00000393067|POU2AF1	MULTI-SECPEP	A375_MHC_IP_R1	1	449.658447265625	2	450.23471	898.454868	-0.031902	-1.4363E-05	-1.3815	-0.00062199	-1.4134	-0.00063636	450.2338864761217	56.348	0.91171	56.348	55.738	56.65	0					21	17	2	0	0	0	0.8824	1	20129	20129		23.148	0	1	1304800	+		3625	17640	2360	2399	3533	3533					0.001578268346634104
APTQMYRLTLR	11	Unmodified	_APTQMYRLTLR_					0	0	0		ENST00000601356.1_1_19:50309826-50310012:+|nuORF	ENST00000601356.1_1_19:50309826-50310012:+|nuORF	ENST00000601356.1_1_19:50309826-50310012:+|nuORF	MSMS	A375_MHC_IP_R1	1	450.66912841796875	3	450.583456	1348.72854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.624	1	27.624	27.124	28.124	0								0	0	0	0.16224	1	8407	8407		7.0371	0.80273	1				3626	13872	2361	2400	3534	3534					0.0681248188243444
APVAPRKGG	9	Unmodified	_APVAPRKGG_					0	0	0			REV__ENSG00000183779|ENST00000331569|ZNF703	REV__ENSG00000183779|ENST00000331569|ZNF703	MULTI-MSMS	A375_MHC_IP_R1	1	426.6711730957031	2	426.756144	851.497735	-0.055068	-2.3501E-05	0.046959	2.004E-05	-0.0081097	-3.4609E-06	426.75604981221244	35.047	0.30609	35.047	34.861	35.167	0					8	5	2	0	0	0	0.67372	1	11621	11621		9.3474	0	1	3077900	+		3627	21778	2362	2401	3535	3535					0.06604641682758938
APWGSSSPSP	10	Unmodified	_APWGSSSPSP_					0	0	0		nc|ENSG00000129116|Q8WX93|PALLD;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD	nc|ENSG00000129116|Q8WX93|PALLD	nc|ENSG00000129116|Q8WX93|PALLD	MULTI-MSMS	A375_MHC_IP_R2	2	487.12420654296875	2	486.724707	971.43486	-0.5334	-0.00025962	0.16035	7.8047E-05	-0.37305	-0.00018157	486.7247527119149	70.051	0.60895	70.785	70.54	71.149	0.7342					19	11	2	0	0	0	0.69306	1	26621	26621		13.906	13.906	1	1498900			3628	14593	2363	2402	3536	3536					-0.05199968895942675
APWGSSSPSP	10	Unmodified	_APWGSSSPSP_					0	0	0		nc|ENSG00000129116|Q8WX93|PALLD;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD	nc|ENSG00000129116|Q8WX93|PALLD	nc|ENSG00000129116|Q8WX93|PALLD	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	486.724707	971.43486	-0.5334	-0.00025962	0.16035	7.8047E-05	-0.37305	-0.00018157	486.7247527119149	70.051	0.60895	70.785	70.54	71.149	0.7342	-0.050328	-0.00016926	NaN	13.906	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1498900			3629	14593	2363	2402							-0.05199968895942675
APWQLCRY	8	Unmodified	_APWQLCRY_					0	0	0			REV__ENSG00000213996|ENST00000389363|TM6SF2	REV__ENSG00000213996|ENST00000389363|TM6SF2	MSMS	A375_MHC_IP_R2	2	518.7984619140625	2	518.755287	1035.49602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.109	1	85.845	85.345	86.345	0.73601								0	0	0	0.16876	1	32355	32355		6.3541	0	1		+		3630	22639	2364	2403	3537	3537					-0.020307353975113074
APWTWWCI	8	Unmodified	_APWTWWCI_					0	0	0			REV__ENST00000323777.7_2_17:56499731-56536131:-|nuORF	REV__ENST00000323777.7_2_17:56499731-56536131:-|nuORF	MSMS	A375_MHC_IP_R2	2	354.921875	3	354.833713	1061.47931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.071	1	40.845	40.345	41.345	0.77451								0	0	0	0.16876	1	14825	14825		1.8442	0.6509	1		+		3631	23586	2365	2404	3538	3538					-0.048972362834774685
APYCFWYYFHY	11	Unmodified	_APYCFWYYFHY_					0	0	0			REV__ENSG00000197548|ENST00000693202|ATG7	REV__ENSG00000197548|ENST00000693202|ATG7	MSMS	A375_MHC_IP_R2	2	780.0169677734375	2	780.326273	1558.63799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.31	1	140.35	139.85	140.85	0.04216								0	0	0	0.16353	1	54930	54930		0.35063	0.043601	1		+		3632	22296	2366	2405	3539	3539					-0.11897987165843915
APYHTGDPQL	10	Unmodified	_APYHTGDPQL_					0	0	0		ENSG00000165434|ENST00000298198|PGM2L1	ENSG00000165434|ENST00000298198|PGM2L1	ENSG00000165434|ENST00000298198|PGM2L1	MULTI-SECPEP	A375_MHC_IP_R1	1	367.2452697753906	3	366.845334	1097.51417	0.26575	9.7489E-05	-0.20173	-7.4004E-05	0.064017	2.3484E-05	366.8452100143029	25.089	0.76075	25.089	24.903	25.664	0					29	14	3	0	0	0	0.72086	1	7256	7256		15.739	1.3332	1	14521000			3633	6951	2367	2406	3540	3540					-0.030683219418278895
AQAEVYKEL	9	Unmodified	_AQAEVYKEL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	A375_MHC_IP_R1	1	526.1767578125	2	525.776939	1049.53933	-0.39632	-0.00020838	0.016668	8.7639E-06	-0.37965	-0.00019961	525.7769903961466	40.465	0.76255	40.465	40.1	40.863	0					25	14	3	0	0	0	0.063333	1	13901	13901		59.052	0	1	5484400			3634	7431	2368	2407	3541	3541					0.016537328607682866
AQAEVYKEL	9	Unmodified	_AQAEVYKEL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1765747070312	2	525.776939	1049.53933	-0.51126	-0.00026881	-0.071683	-3.7689E-05	-0.58295	-0.0003065	525.7768821815016	39.678	0.65992	40.452	40.067	40.727	0.77451					23	12	3	0	0	0	0.26374	1	14648	14648		47.732	0	1	6801600			3635	7431	2368	2407	3542	3542					0.016537328607682866
AQAPDLQRV	9	Unmodified	_AQAPDLQRV_					0	0	0		nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2	nc|ENSG00000111641|P46087-3|NOP2	nc|ENSG00000111641|P46087-3|NOP2	MULTI-SECPEP	A375_MHC_IP_R1	1	499.1078186035156	2	499.274898	996.535243	-0.31502	-0.00015728	-0.10417	-5.201E-05	-0.41919	-0.00020929	499.27478331754025	33.748	0.60692	33.748	33.445	34.052	0					24	11	3	0	0	0	0.14572	1	11064	11064		53.833	17.706	1	12469000			3636	3004	2369	2408	3543	3543					0.03683688157718734
AQAPDLQRV	9	Unmodified	_AQAPDLQRV_					0	0	0		nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2	nc|ENSG00000111641|P46087-3|NOP2	nc|ENSG00000111641|P46087-3|NOP2	MULTI-SECPEP	A375_MHC_IP_R2	2	498.993408203125	2	499.274898	996.535243	-0.66079	-0.00032991	-0.31566	-0.0001576	-0.97644	-0.00048751	499.2747214308761	33.012	0.50921	33.749	33.519	34.028	0.73719					28	9	4	0	0	0	0.13208	1	11783	11783		49.554	20.473	1	14949000			3637	3004	2369	2408	3544	3544					0.03683688157718734
AQAVDEVEPL	10	Unmodified	_AQAVDEVEPL_					0	0	0		nc|ENSG00000132912|Q9UJW0-2|DCTN4;ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4	nc|ENSG00000132912|Q9UJW0-2|DCTN4	nc|ENSG00000132912|Q9UJW0-2|DCTN4	MSMS	A375_MHC_IP_R2	2	535.669677734375	2	535.771854	1069.52915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.759	1	59.506	59.006	60.006	0.74714								0	0	0	0.15332	1	22232	22232		10.074	1.3285	1				3638	4462	2370	2409	3545	3545					-0.002828748644787993
AQEKSFHHV	9	Unmodified	_AQEKSFHHV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.T2707Mfs*5|1|0.21|ENSG00000196367|chr7:98976664-98976688|CGCTGATGTTGGAGCACCAGGCTTT/-|frameshift_variant;TRRAP|p.I1891Sfs*37|1|0.32|ENSG00000196367|chr7:98953393-98953393|T/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	A375_MHC_IP_R1	1	361.9294738769531	3	361.51744	1081.53049	0.29414	0.00010634	4.2763	0.001546	4.5704	0.0016523	361.5184489108904	20.63	0.307	20.63	20.435	20.742	0					7	5	2	0	0	0	0.58271	1	5286	5286		14.405	4.3315	1	391460			3639	9031	2372	2410	3546	3546					-0.007011959850387939
AQEREATSLK	10	Unmodified	_AQEREATSLK_					0	0	0			REV__ENSG00000101997|ENST00000376227|CCDC22	REV__ENSG00000101997|ENST00000376227|CCDC22	MULTI-SECPEP	A375_MHC_IP_R1	1	378.9486389160156	3	378.20341	1131.5884	0.45931	0.00017371	-0.098227	-3.715E-05	0.36108	0.00013656	378.5375931769175	20.413	0.76493	20.413	20.232	20.997	0					24	14	3	0	0	0	0.87043	1	5389	5389		6.6235	6.6235	1	1303600	+		3640	17198	2373	2411	3547	3547					0.02787021149697466
AQFAFRIITE	10	Unmodified	_AQFAFRIITE_					0	0	0			REV__nc|ENSG00000165240|Q04656-5|ATP7A	REV__nc|ENSG00000165240|Q04656-5|ATP7A	MULTI-SECPEP	A375_MHC_IP_R2	2	597.67578125	2	598.327131	1194.63971	-0.89319	-0.00053442	0.86372	0.00051679	-0.029475	-1.7635E-05	598.3274305509353	38.632	0.50873	39.406	39.149	39.658	0.77451					14	9	2	0	0	0	0.92957	1	14169	14169		3.2813	0	1	1533900	+		3641	20565	2374	2412	3548	3548					0.050173899144283496
AQFEHTILL	9	Unmodified	_AQFEHTILL_					0	0	0		nc|ENSG00000111142|P50579-3|METAP2;ENSG00000111142|ENST00000323666|METAP2;nc|ENSG00000111142|P50579-2|METAP2	nc|ENSG00000111142|P50579-3|METAP2	nc|ENSG00000111142|P50579-3|METAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	536.6953125	2	536.295299	1070.57605	-0.86818	-0.0004656	2.5615	0.0013737	1.6933	0.0009081	536.2965209483082	80.622	1.0144	80.622	80.086	81.1	0					56	19	4	0	0	0	0.046478	1	29427	29427		82.529	13.424	1	33549000			3642	2966	2375	2413	3549	3549					0.04358029477339187
AQFPESFTV	9	Unmodified	_AQFPESFTV_					0	0	0		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	A375_MHC_IP_R1	1	513.6506958007812	2	513.250557	1024.48656	-0.43251	-0.00022198	-0.031767	-1.6304E-05	-0.46427	-0.00023829	513.2505056761959	101.83	1.2137	101.83	101.24	102.45	0					34	23	2	0	0	0	0.033557	1	37388	37388		71.922	21.067	1	1521800			3643	2464	2376	2414	3550	3550					-0.024702252020460946
AQFPESFTV	9	Unmodified	_AQFPESFTV_					0	0	0		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	A375_MHC_IP_R2	2	513.6507568359375	2	513.250557	1024.48656	-0.62881	-0.00032274	0.1481	7.6013E-05	-0.48071	-0.00024672	513.2505344708827	101.01	1.2758	101.77	101.19	102.46	0.76428					36	24	2	0	0	0	0.021889	1	38307	38307		81.89	21.501	1	1184300			3644	2464	2376	2414	3551	3551					-0.024702252020460946
AQFPSSGRFW	10	Unmodified	_AQFPSSGRFW_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3;nc|ENSG00000176102|Q12996-2|CSTF3;ENST00000526480.1_1_11:33157665-33182871:-|nuORF	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-SECPEP	A375_MHC_IP_R2	2	592.188720703125	2	591.788173	1181.56179	-0.49525	-0.00029308	-0.1254	-7.4208E-05	-0.62064	-0.00036729	591.788144177521	78.786	0.96378	79.53	79.033	79.997	0.74474					49	18	3	0	0	0	0.88038	1	29828	29828		24.991	16.835	1	7179100			3645	8001	2377	2415	3552	3552					-0.02172622950956793
AQFWLTMFY	9	Unmodified	_AQFWLTMFY_					0	0	0		ENSG00000159650|ENST00000290868|UROC1;nc|ENSG00000159650|Q96N76-2|UROC1	ENSG00000159650|ENST00000290868|UROC1	ENSG00000159650|ENST00000290868|UROC1	MULTI-SECPEP	A375_MHC_IP_R1	1	603.2197265625	2	603.786253	1205.55795	-0.14485	-8.7461E-05	-0.82074	-0.00049555	-0.96559	-0.00058301	603.7855879772676	42.789	0.86113	42.789	42.336	43.197	0					23	16	2	0	0	0	0.65246	1	14993	14993		15.847	1.9411	1	1763200			3646	6382	2378	2416	3553	3553					-0.036604287690352066
AQGPLGPDMES	11	Unmodified	_AQGPLGPDMES_					0	0	0		nc|ENSG00000004777|O14559-11|ARHGAP33;ENSG00000004777|ENST00000007510|ARHGAP33;nc|ENSG00000004777|O14559-10|ARHGAP33	nc|ENSG00000004777|O14559-11|ARHGAP33	nc|ENSG00000004777|O14559-11|ARHGAP33	MULTI-MSMS	A375_MHC_IP_R1	1	551.711181640625	2	551.247689	1100.48082	-0.62004	-0.00034179	-3.9999	-0.0022049	-4.6199	-0.0025467	551.246193060907	46.531	0.60538	46.531	46.144	46.749	0					24	11	3	0	0	0	0.72565	1	16366	16366		13.042	0.80181	1	1254300			3647	870	2379	2417	3554	3554					-0.06539691776038126
AQGPLRQGL	9	Unmodified	_AQGPLRQGL_					0	0	0		ENST00000477592.2_1_6:3737425-3751765:-|nuORF;ENSG00000168994|ENST00000380283|PXDC1	ENST00000477592.2_1_6:3737425-3751765:-|nuORF	ENST00000477592.2_1_6:3737425-3751765:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	470.6717224121094	2	470.272158	938.529764	-0.39332	-0.00018497	0.12535	5.8946E-05	-0.26798	-0.00012602	470.27210575566323	34.203	0.35292	34.203	33.95	34.303	0					10	6	2	0	0	0	0.047455	1	11258	11258		41.84	11.203	1	3495000			3648	7367	2380	2418	3555	3555					0.05804009365908769
AQGPLRQGL	9	Unmodified	_AQGPLRQGL_					0	0	0		ENST00000477592.2_1_6:3737425-3751765:-|nuORF;ENSG00000168994|ENST00000380283|PXDC1	ENST00000477592.2_1_6:3737425-3751765:-|nuORF	ENST00000477592.2_1_6:3737425-3751765:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	470.272158	938.529764	-0.95026	-0.00044688	0.24084	0.00011326	-0.70941	-0.00033362	470.27225574563926	33.418	0.40642	34.171	33.942	34.348	0.75225	-0.015982	6.2124E-05	NaN	41.84	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2682000			3649	7367	2380	2418							0.05804009365908769
AQGPTPRYF	9	Unmodified	_AQGPTPRYF_					0	0	0		ENSG00000149485|ENST00000350997|FADS1;nc|ENSG00000149485|O60427|FADS1	ENSG00000149485|ENST00000350997|FADS1	ENSG00000149485|ENST00000350997|FADS1	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1640014648438	2	518.764166	1035.51378	-0.32284	-0.00016748	0.46268	0.00024002	0.13983	7.2541E-05	518.7641822734018	43.171	0.61056	43.171	42.891	43.502	0					30	11	3	0	0	0	0.11711	1	14963	14963		43.772	32.132	1	9012800			3650	5808	2381	2419	3556	3556					-0.002556968710223373
AQGPTPRYF	9	Unmodified	_AQGPTPRYF_					0	0	0		ENSG00000149485|ENST00000350997|FADS1;nc|ENSG00000149485|O60427|FADS1	ENSG00000149485|ENST00000350997|FADS1	ENSG00000149485|ENST00000350997|FADS1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1639404296875	2	518.764166	1035.51378	-0.63127	-0.00032748	0.061151	3.1723E-05	-0.57012	-0.00029576	518.764014891662	42.407	0.71304	43.179	42.91	43.623	0.7724					34	13	4	0	0	0	0.24324	1	15744	15744		45.7	28.757	1	9037500			3651	5808	2381	2419	3557	3557					-0.002556968710223373
AQGTTWPEY	9	Unmodified	_AQGTTWPEY_					0	0	0		ENST00000264057.6_1_2:234350552-234356938:+|nuORF	ENST00000264057.6_1_2:234350552-234356938:+|nuORF	ENST00000264057.6_1_2:234350552-234356938:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	528.1708984375	2	526.737814	1051.46108	-0.32887	-0.00017323	-0.16413	-8.6456E-05	-0.49301	-0.00025969	526.7376446968184	46.537	0.76157	47.302	46.855	47.617	0.76519					40	14	4	0	0	0	0.4867	1	17428	17428		20.454	3.3407	1	8465600			3652	10330	2382	2420	3558	3558					-0.06259699724478196
AQGVLRQV	8	Unmodified	_AQGVLRQV_					0	0	0		nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1	nc|ENSG00000257923|P39880-6|CUX1	nc|ENSG00000257923|P39880-6|CUX1	MULTI-MSMS	A375_MHC_IP_R1	1	436.1612854003906	2	435.761426	869.5083	-0.2693	-0.00011735	-0.069835	-3.0431E-05	-0.33914	-0.00014778	435.7613651889667	31.138	0.50605	31.138	30.959	31.465	0					15	9	3	0	0	0	0.36021	2	9966	9966;9971		54.774	14.816	1	3985000			3653	9913	2383	2421	3559;3560	3559					0.06832624337187099
AQGVLRQV	8	Unmodified	_AQGVLRQV_					0	0	0		nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1	nc|ENSG00000257923|P39880-6|CUX1	nc|ENSG00000257923|P39880-6|CUX1	MULTI-SECPEP	A375_MHC_IP_R2	2	436.1612854003906	2	435.761426	869.5083	-0.30176	-0.0001315	-0.2282	-9.9441E-05	-0.52996	-0.00023094	435.7613931033445	30.32	0.50731	31.039	30.759	31.266	0.71857					12	9	2	0	0	0	0.84748	1	10681	10681		21.747	3.6003	1	2637400			3654	9913	2383	2421	3561	3561					0.06832624337187099
AQGVWSWFRQA	11	Unmodified	_AQGVWSWFRQA_					0	0	0			REV__nc|ENSG00000283706|Q9UI38|PRSS50	REV__nc|ENSG00000283706|Q9UI38|PRSS50	MULTI-MSMS	A375_MHC_IP_R1	1	668.7318115234375	2	668.333279	1334.652	-0.56029	-0.00037446	-2.051	-0.0013707	-2.6113	-0.0017452	668.3325318111454	40.321	0.4085	40.321	40.1	40.509	0					14	7	3	0	0	0	0.72992	1	13867	13867		8.9762	0.23084	1	3680800	+		3655	27548	2384	2422	3562	3562					-0.001935736225277651
AQHPRKRRFQR	11	Unmodified	_AQHPRKRRFQR_					0	0	0		ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	741.3311157226562	2	740.429442	1478.84433	-0.65052	-0.00048166	0.17172	0.00012714	-0.4788	-0.00035452	740.4293633270878	142.41	0.60941	142.44	142.03	142.64	0.030731					37	11	4	0	0	0	0.73902	1	55589	55589		0.30703	0.30703	1	9655400			3656	7188	2385	2423	3563	3563					0.12406186568136945
AQIETDFKIEE	11	Unmodified	_AQIETDFKIEE_					0	0	0			REV__nc|ENSG00000142166|P17181-2|IFNAR1	REV__nc|ENSG00000142166|P17181-2|IFNAR1	MULTI-MSMS	A375_MHC_IP_R2	2	441.95465087890625	3	441.553997	1321.64016	-0.45644	-0.00020154	0.76135	0.00033618	0.30491	0.00013463	441.55436412064404	55.258	0.86476	56.009	55.523	56.388	0.75075					37	16	3	0	0	0	0.73354	1	20808	20808		5.5233	1.647	1	3977200	+		3657	19295	2386	2424	3564	3564					-0.007792799470053069
AQIGSYVHV	9	Unmodified	_AQIGSYVHV_					0	0	0		ENSG00000166847|ENST00000300087|DCTN5;ENST00000566053.5_1_16:23652819-23678462:+|nuORF;nc|ENSG00000166847|Q9BTE1-2|DCTN5	ENSG00000166847|ENST00000300087|DCTN5	ENSG00000166847|ENST00000300087|DCTN5	MULTI-MSMS	A375_MHC_IP_R1	1	487.658447265625	2	487.258717	972.50288	-0.34169	-0.00016649	0.068364	3.3311E-05	-0.27332	-0.00013318	487.258747891699	53.291	0.45652	53.291	53.048	53.505	0					15	8	2	0	0	0	0.098973	1	18984	18984		50.855	18.55	1	2190300			3658	7117	2387	2425	3565	3565					0.015529007547115725
AQIGSYVHV	9	Unmodified	_AQIGSYVHV_					0	0	0		ENSG00000166847|ENST00000300087|DCTN5;ENST00000566053.5_1_16:23652819-23678462:+|nuORF;nc|ENSG00000166847|Q9BTE1-2|DCTN5	ENSG00000166847|ENST00000300087|DCTN5	ENSG00000166847|ENST00000300087|DCTN5	MULTI-MSMS	A375_MHC_IP_R2	2	487.6585998535156	2	487.258717	972.50288	-1.0226	-0.00049827	0.33972	0.00016553	-0.68287	-0.00033273	487.2589419520491	52.507	0.4037	53.259	52.983	53.386	0.75225					11	7	2	0	0	0	0.1478	1	19817	19817		42.095	15.211	1	4424600			3659	7117	2387	2425	3566	3566					0.015529007547115725
AQKELTALLP	10	Unmodified	_AQKELTALLP_					0	0	0			REV__PPP6R3|p.E246A|1|0.41|ENSG00000110075|chr11:68558571-68558571|A/C|missense_variant	REV__PPP6R3|p.E246A|1|0.41|ENSG00000110075|chr11:68558571-68558571|A/C|missense_variant	MSMS	A375_MHC_IP_R1	1	361.9294738769531	3	361.88513	1082.63356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.532	1	20.532	20.032	21.032	0								0	0	0	0.14739	1	5286	5286		22.775	8.3696	1		+		3660	27830	2388	2426	3567	3567					0.09554871682894372
AQKGVLFQE	9	Unmodified	_AQKGVLFQE_					0	0	0		nc|ENSG00000137601|Q96PY6-5|NEK1;nc|ENSG00000137601|Q96PY6-4|NEK1;nc|ENSG00000137601|Q96PY6-2|NEK1;nc|ENSG00000137601|Q96PY6-6|NEK1;nc|ENSG00000137601|Q96PY6|NEK1;ENSG00000137601|ENST00000507142|NEK1	nc|ENSG00000137601|Q96PY6-5|NEK1	nc|ENSG00000137601|Q96PY6-5|NEK1	MULTI-SECPEP	A375_MHC_IP_R2	2	509.689208984375	2	510.279649	1018.54475	-0.72599	-0.00037046	0.28258	0.00014419	-0.44342	-0.00022627	510.27958087109636	67.506	0.50981	68.242	68.001	68.511	0.73631					16	9	2	0	0	0	0.65246	1	25555	25555		21.747	6.9084	1	1704200			3661	4899	2389	2427	3568	3568					0.03621456443238458
AQKGVLFQE	9	Unmodified	_AQKGVLFQE_					0	0	0		nc|ENSG00000137601|Q96PY6-5|NEK1;nc|ENSG00000137601|Q96PY6-4|NEK1;nc|ENSG00000137601|Q96PY6-2|NEK1;nc|ENSG00000137601|Q96PY6-6|NEK1;nc|ENSG00000137601|Q96PY6|NEK1;ENSG00000137601|ENST00000507142|NEK1	nc|ENSG00000137601|Q96PY6-5|NEK1	nc|ENSG00000137601|Q96PY6-5|NEK1	MULTI-MATCH	A375_MHC_IP_R1	1		2	510.279649	1018.54475	-0.53438	-0.00027268	0.35573	0.00018152	-0.17865	-9.1163E-05	510.27997778760056	68.489	0.70983	68.489	68.26	68.969	0	0.12327	2.8481E-05	NaN	15.847	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2162700			3662	4899	2389	2427							0.03621456443238458
AQKKTRRRPFW	11	Unmodified	_AQKKTRRRPFW_					0	0	0		nc|ENSG00000116698|Q92540-4|SMG7	nc|ENSG00000116698|Q92540-4|SMG7	nc|ENSG00000116698|Q92540-4|SMG7	MULTI-SECPEP	A375_MHC_IP_R2	2	492.1636962890625	3	491.956505	1472.84768	-0.45033	-0.00022154	1.3847	0.00068123	0.93442	0.00045969	491.9573186562399	63.832	0.60995	64.572	64.394	65.004	0.74022					27	11	3	0	0	0	1.0005	1	24241	24241		1.1098	1.1098	1	986060			3663	14558	2390	2428	3569	3569					0.13017436622135392
AQKRKWRSQ	9	Unmodified	_AQKRKWRSQ_					0	0	0			REV__ENST00000424326.5_1_2:167262092-167297919:-|nuORF	REV__ENST00000424326.5_1_2:167262092-167297919:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	594.8233642578125	2	594.341438	1186.66832	-0.34938	-0.00020765	1.9669	0.001169	1.6176	0.00096138	594.8465528835518	100.23	0.30505	100.99	100.78	101.08	0.76278					9	5	3	0	0	0	0.73804	1	37966	37966		3.5965	0.31518	1	828210	+		3664	24624	2391	2429	3570	3570					0.08245552334233253
AQLFKRSL	8	Unmodified	_AQLFKRSL_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MSMS	A375_MHC_IP_R1	1	481.6912536621094	2	481.792727	961.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.006	1	79.006	78.506	79.506	0								0	0	0	0.16876	1	28837	28837		12.532	2.3482	1				3665	3034	2392	2430	3571	3571					0.08857770405370502
AQLLQILQAL	10	Unmodified	_AQLLQILQAL_					0	0	0		nc|ENSG00000182872|P98175-5|RBM10;nc|ENSG00000182872|P98175-4|RBM10;nc|ENSG00000182872|P98175-3|RBM10;nc|ENSG00000182872|P98175-2|RBM10;ENSG00000182872|ENST00000377604|RBM10	nc|ENSG00000182872|P98175-5|RBM10	nc|ENSG00000182872|P98175-5|RBM10	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1446533203125	2	555.847699	1109.68084	-0.82989	-0.00046129	-0.7134	-0.00039654	-1.5433	-0.00085784	556.3489819491609	81.877	0.40744	82.62	82.482	82.889	0.74293					15	7	3	0	0	0	0.88918	1	31156	31156		13.042	2.1435	1	2208800			3666	14805	2393	2431	3572	3572					0.13039150953886747
AQNDSQYD	8	Unmodified	_AQNDSQYD_					0	0	0			REV__ENSG00000116711|ENST00000367466|PLA2G4A	REV__ENSG00000116711|ENST00000367466|PLA2G4A	MULTI-MSMS	A375_MHC_IP_R1	1	470.6557922363281	2	470.685778	939.357004	-0.38594	-0.00018166	-0.19661	-9.2541E-05	-0.58255	-0.0002742	470.68559224957386	64.068	0.7094	64.068	63.684	64.393	0					28	13	3	0	0	0	0.77702	1	23050	23050		5.7604	5.7604	1	3894300	+		3667	17968	2394	2432	3573	3573					-0.11510026551991359
AQPLPSCTSL	10	Unmodified	_AQPLPSCTSL_					0	0	0			REV__ENST00000485071.2_1_7:100172732-100173215:-|nuORF	REV__ENST00000485071.2_1_7:100172732-100173215:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	508.1664733886719	2	508.757692	1015.50083	-0.45488	-0.00023142	-0.21253	-0.00010812	-0.6674	-0.00033955	508.75748514397776	58.252	1.32	58.252	57.313	58.633	0					28	25	2	0	0	0	0.78945	1	20775	20775		13.906	13.906	1	1506500	+		3668	25307	2395	2433	3574	3574					-0.006298960453932523
AQPQNDFFAF	10	Unmodified	_AQPQNDFFAF_					0	0	0			REV__nc|ENSG00000140853|Q86WI3-4|NLRC5;REV__ENST00000543049.1_1_16:57114926-57116437:+|nuORF	REV__nc|ENSG00000140853|Q86WI3-4|NLRC5	MSMS	A375_MHC_IP_R1	1	592.6895751953125	2	592.772188	1183.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.825	1	79.825	79.325	80.325	0								0	0	0	0.15417	1	29140	29140		7.2892	0.18751	1		+		3669	19233;25974	2396	2434	3575	3575					-0.054600354247895666
AQPSPQQDVY	10	Unmodified	_AQPSPQQDVY_					0	0	0		ARID1A|p.R1879Sfs*22|1|0.55|ENSG00000117713|chr1:26779531-26779532|-/T|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;nc|ENSG00000117713|O14497-3|ARID1A	ARID1A|p.R1879Sfs*22|1|0.55|ENSG00000117713|chr1:26779531-26779532|-/T|frameshift_variant	ARID1A|p.R1879Sfs*22|1|0.55|ENSG00000117713|chr1:26779531-26779532|-/T|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	568.689208984375	2	566.767103	1131.51965	-0.59936	-0.0003397	-0.089857	-5.0928E-05	-0.68921	-0.00039062	566.7670955727237	34.792	1.5185	35.556	35.223	36.741	0.76338					95	29	5	0	0	0	0.52785	1	12723	12723		26.268	9.3258	1	120290000			3670	177	2397	2435	3576	3576					-0.0408464315000856
AQQASCLRSLW	11	Unmodified	_AQQASCLRSLW_					0	0	0			REV__LTR2752_dup21|chr2:81481148-81482372:-|1.6527395747859144|0.0780133736102343|4.4|397.0|54|3|anti-sense	REV__LTR2752_dup21|chr2:81481148-81482372:-|1.6527395747859144|0.0780133736102343|4.4|397.0|54|3|anti-sense	MSMS	A375_MHC_IP_R2	2	631.7535400390625	2	631.819147	1261.62374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.76	1	106.52	106.02	107.02	0.75977								0	0	0	0.16203	1	39991	39991		8.1555	0.54658	1		+		3671	26966	2398	2436	3577	3577					0.0033936040586013405
AQQPHIAGV	9	Unmodified	_AQQPHIAGV_					0	0	0		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-MSMS	A375_MHC_IP_R1	1	460.6583557128906	2	460.751059	919.487565	-0.35224	-0.00016229	0.19314	8.8988E-05	-0.1591	-7.3306E-05	460.75106323966065	32.193	0.56329	32.193	31.921	32.485	0					16	10	2	0	0	0	0.35581	1	10326	10326		26.884	3.7352	1	3373700			3672	1273	2399	2437	3578	3578					0.0246003395752723
AQREIKLDWMF	11	Unmodified	_AQREIKLDWMF_					0	0	0		ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	MULTI-SECPEP	A375_MHC_IP_R1	1	719.2706298828125	2	718.871379	1435.72821	-0.48679	-0.00034994	-0.39212	-0.00028189	-0.87892	-0.00063183	718.8708718485318	53.69	0.30466	53.69	53.505	53.809	0					12	5	3	0	0	0	0.99331	1	19182	19182		5.2969	0	1	2060900			3673	4417	2400	2438	3579	3579					0.02777062162567745
AQRRFAHRRR	10	Unmodified	_AQRRFAHRRR_					0	0	0			REV__SLC45A4|p.V701Wfs*8|1|0.47|ENSG00000022567|chr8:141212398-141212398|A/-|frameshift_variant	REV__SLC45A4|p.V701Wfs*8|1|0.47|ENSG00000022567|chr8:141212398-141212398|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	678.3170166015625	2	677.395402	1352.77625	-0.47631	-0.00032265	-0.17859	-0.00012097	-0.6549	-0.00044362	677.3949291377653	148.87	2.4106	148.89	147.6	150.01	0.018692					187	99	4	0	0	0	0.72607	1	57800	57800		1.4819	1.4819	1	871300	+		3674	16272	2401	2439	3580	3580					0.11397361708122844
AQRRLEHL	8	Unmodified	_AQRRLEHL_					0	0	0		ENSG00000149782|ENST00000279230|PLCB3;nc|ENSG00000149782|Q01970-2|PLCB3	ENSG00000149782|ENST00000279230|PLCB3	ENSG00000149782|ENST00000279230|PLCB3	MSMS	A375_MHC_IP_R2	2	511.7105712890625	2	511.796332	1021.57811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.74	1	142.77	142.27	143.27	0.030731								0	0	0	0.16876	1	55802	55802		5.2307	0	1				3675	5830	2402	2440	3581	3581					0.06818503005797538
AQSLASVQSV	10	Unmodified	_AQSLASVQSV_					0	0	0		ENSG00000180488|ENST00000370791|MIGA1;nc|ENSG00000180488|Q8NAN2|MIGA1;nc|ENSG00000180488|Q8NAN2-2|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	MULTI-MSMS	A375_MHC_IP_R2	2	496.1679382324219	2	495.266739	988.518924	-0.5246	-0.00025982	-0.019209	-9.5135E-06	-0.54381	-0.00026933	495.2666543691656	32.593	0.81417	33.33	33.01	33.825	0.73692					21	15	2	0	0	0	0.54492	1	11592	11592		24.991	2.2547	1	4948400			3676	8301	2403	2441	3582	3582					0.0242056220096174
AQTAEWGTT	9	Unmodified	_AQTAEWGTT_					0	0	0			REV__ENST00000398372.2_1_2:26372115-26372244:+|nuORF	REV__ENST00000398372.2_1_2:26372115-26372244:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	482.6845703125	2	482.722164	963.429775	-0.59616	-0.00028778	-0.15023	-7.2521E-05	-0.74639	-0.0003603	482.72203789562025	68.353	0.81396	68.353	67.955	68.769	0					38	15	3	0	0	0	0.64808	1	24873	24873		11.64	0	1	8502800	+		3677	24375	2404	2442	3583	3583					-0.05340272758576248
AQTNKFNY	8	Unmodified	_AQTNKFNY_					0	0	0		nc|ENSG00000106366|P05121-2|SERPINE1;ENSG00000106366|ENST00000223095|SERPINE1	nc|ENSG00000106366|P05121-2|SERPINE1	nc|ENSG00000106366|P05121-2|SERPINE1	MULTI-MSMS	A375_MHC_IP_R2	2	493.6505126953125	2	493.240524	984.466495	-0.53539	-0.00026408	0.22451	0.00011074	-0.31087	-0.00015334	493.24057106608274	31.281	0.41028	32	31.821	32.231	0.71857					14	7	2	0	0	0	0.73946	1	10988	10988		23.148	6.2061	1	4099700			3678	2686	2405	2443	3584	3584					-0.026359761420053474
AQTSYRDLW	9	Unmodified	_AQTSYRDLW_					0	0	0		ENST00000590083.5_1_19:1229180-1230152:-|nuORF;ENSG00000099625|ENST00000650044|CBARP	ENST00000590083.5_1_19:1229180-1230152:-|nuORF	ENST00000590083.5_1_19:1229180-1230152:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	570.9671020507812	2	570.277638	1138.54072	-0.59459	-0.00033908	0.53378	0.0003044	-0.060809	-3.4678E-05	570.7794187073391	57.739	0.25348	58.488	58.375	58.629	0.74894					7	4	2	0	0	0	0.58271	1	21810	21810		26.884	0	1	1836000			3679	2080	2406	2444	3585	3585					-0.023006330504813377
AQYQALERKY	10	Unmodified	_AQYQALERKY_					0	0	0		ENSG00000108819|ENST00000612501|PPP1R9B	ENSG00000108819|ENST00000612501|PPP1R9B	ENSG00000108819|ENST00000612501|PPP1R9B	MULTI-MSMS	A375_MHC_IP_R1	1	424.29083251953125	3	423.891055	1268.65134	-0.21813	-9.2461E-05	-0.47115	-0.00019972	-0.68928	-0.00029218	423.89097767688884	27.677	0.45507	27.677	27.432	27.887	0					26	8	4	0	0	0	0.27133	1	8428	8428		36.395	11.438	1	11308000			3680	2840	2407	2445	3586	3586					0.027755869377415365
AQYQALERKY	10	Unmodified	_AQYQALERKY_					0	0	0		ENSG00000108819|ENST00000612501|PPP1R9B	ENSG00000108819|ENST00000612501|PPP1R9B	ENSG00000108819|ENST00000612501|PPP1R9B	MULTI-MSMS	A375_MHC_IP_R2	2	424.2911682128906	3	423.891055	1268.65134	-0.33062	-0.00014015	0.3913	0.00016587	0.060684	2.5724E-05	423.89117487855344	26.934	0.41021	27.594	27.363	27.773	0.65992					14	7	2	0	0	0	0.27133	1	9158	9158		30.431	10.445	1	12313000			3681	2840	2407	2445	3587	3587					0.027755869377415365
ARAAALCLLS	10	Unmodified	_ARAAALCLLS_					0	0	0		ENST00000435359.5_1_17:2592883-2592961:-|nuORF	ENST00000435359.5_1_17:2592883-2592961:-|nuORF	ENST00000435359.5_1_17:2592883-2592961:-|nuORF	MSMS	A375_MHC_IP_R2	2	494.6820373535156	2	494.784044	987.553536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.15	1	123.53	123.03	124.03	0.3766								0	0	0	0.15451	1	47275	47275		6.2058	0	1				3682	11908	2408	2446	3588	3588					0.05926106808044551
ARAELEMRL	9	Unmodified	_ARAELEMRL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	A375_MHC_IP_R2	2	363.9339599609375	3	363.534214	1087.58081	-0.16346	-5.9422E-05	0.23804	8.6534E-05	0.074579	2.7112E-05	363.8686803380799	45.061	0.81464	45.831	45.34	46.154	0.76909					30	15	3	0	0	0	0.4782	1	16867	16867		20.871	6.653	1	2161000			3683	4888	2409	2447	3589	3589					0.04052590348442209
ARAELEMRL	9	Unmodified	_ARAELEMRL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	363.534214	1087.58081	0.27317	9.9308E-05	-0.49914	-0.00018145	-0.22596	-8.2145E-05	363.53399737029696	45.966	0.45652	45.966	45.839	46.295	0	0.067643	-0.00028571	NaN	20.871	16	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2589400			3684	4888	2409	2447							0.04052590348442209
ARAFQYVKE	9	Unmodified	_ARAFQYVKE_					0	0	0		ENSG00000136943|ENST00000259470|CTSV;CTSV|p.G194R|1|0.44|ENSG00000136943|chr9:97036564-97036564|C/T|missense_variant	ENSG00000136943|ENST00000259470|CTSV	ENSG00000136943|ENST00000259470|CTSV	MULTI-SECPEP	A375_MHC_IP_R1	1	370.6083984375	3	371.201341	1110.58219	0.39011	0.00014481	-0.36959	-0.00013719	0.020518	7.6165E-06	371.2012400964911	33.784	0.50516	33.784	33.496	34.001	0					27	9	4	0	0	0	0.80516	1	10946	10946		0.18151	0.041616	1	10975000			3685	4849	2410	2448	3590	3590					0.031325477088330445
ARASDSGRY	9	Unmodified	_ARASDSGRY_					0	0	0		ENSG00000162746|ENST00000367948|FCRLB;ENST00000495397.1_1_1:161695693-161695912:+|nuORF;nc|ENSG00000162746|Q6BAA4-3|FCRLB;nc|ENSG00000162746|Q6BAA4-2|FCRLB;nc|ENSG00000162746|Q6BAA4-5|FCRLB;nc|ENSG00000162746|Q6BAA4-4|FCRLB;nc|ENSG00000148357|Q8NDA2-4|HMCN2;nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2	ENSG00000162746|ENST00000367948|FCRLB;nc|ENSG00000148357|Q8NDA2-4|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	MSMS	A375_MHC_IP_R2	2	491.6549377441406	2	491.73868	981.462806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.674	1	69.409	68.909	69.909	0.73511								0	0	0	0.15069	1	26023	26023		20.454	4.6854	1				3686	14668;6588	2411	2449	3591	3591					-0.0286664591585577
ARDLHLREA	9	Unmodified	_ARDLHLREA_					0	0	0		nc|ENSG00000078295|Q08462-2|ADCY2	nc|ENSG00000078295|Q08462-2|ADCY2	nc|ENSG00000078295|Q08462-2|ADCY2	MSMS	A375_MHC_IP_R1	1	360.92596435546875	3	360.868473	1079.58359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.493	1	32.493	31.993	32.993	0								0	0	0	0.15486	1	10504	10504		5.4027	0	1				3687	14485	2412	2450	3592	3592					0.046981817976075035
AREEEFKAF	9	Unmodified	_AREEEFKAF_					0	0	0			REV__nc|ENSG00000259207|P05106-2|ITGB3	REV__nc|ENSG00000259207|P05106-2|ITGB3	MSMS	A375_MHC_IP_R2	2	376.24163818359375	3	376.189101	1125.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.119	1	41.894	41.394	42.394	0.77451								0	0	0	0.15486	1	15248	15248		9.544	3.8121	1		+		3688	22902	2413	2451	3593	3593					-0.012277489077177961
AREEVWLAK	9	Unmodified	_AREEVWLAK_					0	0	0			REV__ENSG00000123171|ENST00000242819|CCDC70	REV__ENSG00000123171|ENST00000242819|CCDC70	MULTI-SECPEP	A375_MHC_IP_R1	1	551.7056884765625	2	551.306198	1100.59784	-0.43656	-0.00024068	-0.022315	-1.2302E-05	-0.45887	-0.00025298	551.3061458362445	42.337	0.5051	42.337	42.032	42.537	0					18	7	3	0	0	0	0.61452	1	14700	14700		15.248	7.9593	1	8625300	+		3689	18233	2414	2452	3594	3594					0.051568342258860866
ARELDGLQR	9	Unmodified	_ARELDGLQR_					0	0	0			REV__ENSG00000164151|ENST00000296564|ICE1	REV__ENSG00000164151|ENST00000296564|ICE1	MULTI-SECPEP	A375_MHC_IP_R1	1	529.6907958984375	2	529.291079	1056.56761	-0.66133	-0.00035004	0.20442	0.0001082	-0.45691	-0.00024184	529.2911021503165	19.597	0.35599	19.597	19.42	19.776	0					15	6	3	0	0	0	0.65623	1	4912	4912		23.79	0	1	6766900	+		3690	20458	2415	2453	3595	3595					0.04158475560689112
ARFGSVNEL	9	Unmodified	_ARFGSVNEL_					0	0	0		ENSG00000117000|ENST00000372771|RLF	ENSG00000117000|ENST00000372771|RLF	ENSG00000117000|ENST00000372771|RLF	MULTI-MSMS	A375_MHC_IP_R1	1	497.1611022949219	2	496.761623	991.508694	0.020541	1.0204E-05	-1.6196	-0.00080456	-1.5991	-0.00079435	496.7606496170619	48.519	0.76002	48.519	48.173	48.933	0					24	14	2	0	0	0	0.10622	1	17117	17117		49.554	13.427	1	6062500			3691	3451	2416	2454	3596	3596					0.012599992663695048
ARFKKVVLI	9	Unmodified	_ARFKKVVLI_					0	0	0		ENSG00000181433|ENST00000370709|SAGE1	ENSG00000181433|ENST00000370709|SAGE1	ENSG00000181433|ENST00000370709|SAGE1	MULTI-SECPEP	A375_MHC_IP_R1	1	358.9779357910156	3	358.577972	1072.71209	0.14743	5.2864E-05	-0.22815	-8.1809E-05	-0.080721	-2.8945E-05	358.57785875238636	40.749	0.50434	40.749	40.509	41.013	0					19	9	3	0	0	0	0.47674	1	14049	14049		29.841	0	1	2507100			3692	8346	2417	2455	3597	3597					0.1786376877867042
ARFKKVVLI	9	Unmodified	_ARFKKVVLI_					0	0	0		ENSG00000181433|ENST00000370709|SAGE1	ENSG00000181433|ENST00000370709|SAGE1	ENSG00000181433|ENST00000370709|SAGE1	MULTI-SECPEP	A375_MHC_IP_R2	2	358.97796630859375	3	358.577972	1072.71209	-0.24297	-8.7122E-05	-0.07828	-2.8069E-05	-0.32125	-0.00011519	358.57789693235355	39.549	0.4576	40.324	40.067	40.524	0.77451					14	8	2	0	0	0	0.65623	1	14633	14633		23.79	0	1	3817400			3693	8346	2417	2455	3598	3598					0.1786376877867042
ARFNKLDTFAS	11	Unmodified	_ARFNKLDTFAS_					0	0	0			REV__Tigger1_dup5491|chr7:22483914-22485489:+|2.0575126454345183|0.2644366730707643|2.96|467.0|74|1|anti-sense	REV__Tigger1_dup5491|chr7:22483914-22485489:+|2.0575126454345183|0.2644366730707643|2.96|467.0|74|1|anti-sense	MULTI-MSMS	A375_MHC_IP_R2	2	424.2789306640625	3	423.891055	1268.65134	-0.18733	-7.9408E-05	0.20397	8.6461E-05	0.016638	7.0528E-06	423.89114142640767	39.679	0.45702	40.454	40.169	40.626	0.77451					17	8	3	0	0	0	0.72728	1	14555	14555		6.2344	2.1177	1	7185700	+		3694	28111	2418	2456	3599	3599					0.027755869377415365
ARFRNISRI	9	Unmodified	_ARFRNISRI_					0	0	0		ENSG00000159377|ENST00000290541|PSMB4;ENST00000495288.5_1_1:151372054-151373071:+|nuORF;ENST00000493673.1_1_1:151372075-151372920:+|nuORF;ENST00000476467.1_1_1:151372063-151372664:+|nuORF	ENSG00000159377|ENST00000290541|PSMB4	ENSG00000159377|ENST00000290541|PSMB4	MULTI-MSMS	A375_MHC_IP_R1	1	378.6280212402344	3	378.228113	1131.66251	0.019202	7.2628E-06	-0.18601	-7.0356E-05	-0.16681	-6.3093E-05	378.2280918197015	26.144	0.60862	26.144	25.966	26.575	0					18	11	2	0	0	0	0.22164	1	7748	7748		36.395	8.1614	1	11303000			3695	6369	2419	2457	3600	3600					0.1019445382255526
ARFRRPWRRRF	11	Unmodified	_ARFRRPWRRRF_					0	0	0			REV__ENST00000575234.1_1_16:3355499-3356027:+|nuORF	REV__ENST00000575234.1_1_16:3355499-3356027:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	802.8668823242188	2	802.468901	1602.92325	-0.093139	-7.4741E-05	-0.37258	-0.00029898	-0.46572	-0.00037372	802.4666632453324	69.954	0.60603	69.954	69.631	70.237	0					25	11	3	0	0	0	1.0014	1	25400	25400		0.30703	0	1	3951900	+		3696	26305	2420	2458	3601	3601					0.14590458593079347
ARFSGNLLV	9	Unmodified	_ARFSGNLLV_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	A375_MHC_IP_R1	1	489.1678771972656	2	488.782359	975.550165	-0.63401	-0.00030989	0.46535	0.00022745	-0.16867	-8.2441E-05	488.7825483879686	67.577	0.91396	67.577	67.194	68.108	0					50	17	5	0	0	0	0.082375	1	24517	24517		53.833	2.9778	1	74680000			3697	1290	2421	2459	3602	3602					0.061411800257246796
ARGERRGCSR	10	Unmodified	_ARGERRGCSR_					0	0	0		nc|ENSG00000140326|Q8IWY9-1|CDAN1;ENSG00000140326|ENST00000356231|CDAN1	nc|ENSG00000140326|Q8IWY9-1|CDAN1	nc|ENSG00000140326|Q8IWY9-1|CDAN1	MSMS	A375_MHC_IP_R1	1	383.2682189941406	3	383.200228	1146.57886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.603	1	23.603	23.103	24.103	0								0	0	0	0.15038	1	6513	6513		10.899	0.74838	1				3698	5144	2422	2460	3603	3603					0.011429743832195527
ARGRSRLSM	9	Unmodified	_ARGRSRLSM_					0	0	0		ENST00000514495.1_1_4:1222021-1242776:-|nuORF	ENST00000514495.1_1_4:1222021-1242776:-|nuORF	ENST00000514495.1_1_4:1222021-1242776:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	516.6797485351562	2	517.287817	1032.56108	-0.69178	-0.00035785	-0.69643	-0.00036026	-1.3882	-0.00071811	517.2876064687713	68.55	1.6728	68.55	67.754	69.427	0					75	32	3	0	0	0	0.38603	2	24856	24777;24856		25.399	25.399	1	24551000			3699	12940	2423	2461	3604;3605	3605					0.04610259128344296
ARGRSRLSM	9	Unmodified	_ARGRSRLSM_					0	0	0		ENST00000514495.1_1_4:1222021-1242776:-|nuORF	ENST00000514495.1_1_4:1222021-1242776:-|nuORF	ENST00000514495.1_1_4:1222021-1242776:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	517.711181640625	2	517.287817	1032.56108	-0.4191	-0.0002168	-0.67193	-0.00034758	-1.091	-0.00056438	517.2873200156408	40.674	0.50815	40.674	40.304	40.813	0					15	9	2	0	0	0	0.60917	1	14038	14038		25.399	25.399	1	5483300			3700	12940	2423	2461	3606	3606					0.04610259128344296
ARGRSRLSM	9	Unmodified	_ARGRSRLSM_					0	0	0		ENST00000514495.1_1_4:1222021-1242776:-|nuORF	ENST00000514495.1_1_4:1222021-1242776:-|nuORF	ENST00000514495.1_1_4:1222021-1242776:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	516.6788940429688	2	517.287817	1032.56108	-0.72758	-0.00037637	-0.94759	-0.00049018	-1.6752	-0.00086655	517.2873897656715	67.504	1.2196	68.24	67.495	68.715	0.73631					72	23	4	0	0	0	0.38603	3	25593	25593;25674;25753		25.399	25.399	1	28541000			3701	12940	2423	2461	3607;3608;3609	3607					0.04610259128344296
ARGRSRLSM	9	Unmodified	_ARGRSRLSM_					0	0	0		ENST00000514495.1_1_4:1222021-1242776:-|nuORF	ENST00000514495.1_1_4:1222021-1242776:-|nuORF	ENST00000514495.1_1_4:1222021-1242776:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	517.7111206054688	2	517.287817	1032.56108	-0.78807	-0.00040766	-0.40286	-0.00020839	-1.1909	-0.00061605	517.2873841231985	39.862	0.761	40.637	40.169	40.93	0.77451					20	14	2	0	0	0	0.60917	1	14721	14721		25.399	25.399	1	4735600			3702	12940	2423	2461	3610	3610					0.04610259128344296
ARGWVSAL	8	Unmodified	_ARGWVSAL_					0	0	0			REV__ENSG00000155858|ENST00000286307|LSM11	REV__ENSG00000155858|ENST00000286307|LSM11	MULTI-SECPEP	A375_MHC_IP_R1	1	429.632080078125	2	430.24287	858.471186	-0.50175	-0.00021587	1.2612	0.00054263	0.75947	0.00032675	430.24330219348013	67.643	0.40568	67.643	67.399	67.804	0					11	7	2	0	0	0	0.972	1	24513	24513		4.756	0	1	524270	+		3703	19943	2424	2462	3611	3611					0.03628952791427764
ARHAIRLA	8	Unmodified	_ARHAIRLA_					0	0	0			REV__AMDHD2|p.P286L|1|0.46|ENSG00000162066|chr16:2528375-2528375|C/T|missense_variant	REV__AMDHD2|p.P286L|1|0.46|ENSG00000162066|chr16:2528375-2528375|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	454.6824035644531	2	454.28286	906.551168	-0.58092	-0.0002639	-0.77087	-0.00035019	-1.3518	-0.00061409	454.28223897068847	143.61	0.34146	143.61	143.49	143.84	0					14	6	3	0	0	0	0.7779	1	55090	55090		2.5775	2.5775	1	2463500	+		3704	15387	2425	2463	3612	3612					0.09415439185261221
ARHAIRLA	8	Unmodified	_ARHAIRLA_					0	0	0			REV__AMDHD2|p.P286L|1|0.46|ENSG00000162066|chr16:2528375-2528375|C/T|missense_variant	REV__AMDHD2|p.P286L|1|0.46|ENSG00000162066|chr16:2528375-2528375|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	454.28286	906.551168	-0.034606	-1.5721E-05	-1.6073	-0.00073018	-1.6419	-0.0007459	454.28162913130336	143.64	0.50085	143.66	143.44	143.94	0.024414	0.028292	-0.00062232	NaN	2.5775	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1939500	+		3705	15387	2425	2463							0.09415439185261221
ARIRLLRRLL	10	Unmodified	_ARIRLLRRLL_					0	0	0			REV__ENST00000526508.5_1_11:46694742-46694910:+|nuORF	REV__ENST00000526508.5_1_11:46694742-46694910:+|nuORF	MSMS	A375_MHC_IP_R2	2	640.4974975585938	2	640.443498	1278.87244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.142	1	24.785	24.285	25.285	0.64368								0	0	0	0.15642	1	7883	7883		0	0	1		+		3706	25773	2426	2464	3613	3613					0.24416116495558526
ARKFTHISAL	10	Unmodified	_ARKFTHISAL_					0	0	0		ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4;nc|ENSG00000053900|Q9UJX5-2|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	MSMS	A375_MHC_IP_R1	1	381.9482727050781	3	381.892619	1142.65603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.208	1	34.208	33.708	34.708	0								0	0	0	0.15382	1	11250	11250		8.4443	0	1				3707	1252	2427	2465	3614	3614					0.09040515871197385
ARKFTHISAL	10	Unmodified	_ARKFTHISAL_					0	0	0		ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4;nc|ENSG00000053900|Q9UJX5-2|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	MSMS	A375_MHC_IP_R2	2	381.9485168457031	3	381.892619	1142.65603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.135	1	33.887	33.387	34.387	0.75225								0	0	0	0.15267	1	11846	11846		12.175	0.68004	1				3708	1252	2427	2465	3615	3615					0.09040515871197385
ARKPALPRFI	10	Unmodified	_ARKPALPRFI_					0	0	0			REV__ENSG00000166317|ENST00000394810|SYNPO2L	REV__ENSG00000166317|ENST00000394810|SYNPO2L	MSMS	A375_MHC_IP_R1	1	390.2888488769531	3	390.248625	1167.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.168	1	73.168	72.668	73.668	0								0	0	0	0.15245	1	26633	26633		12.873	7.0892	1		+		3709	20668	2428	2466	3616	3616					0.1468938552184227
ARKPALPRFI	10	Unmodified	_ARKPALPRFI_					0	0	0			REV__ENSG00000166317|ENST00000394810|SYNPO2L	REV__ENSG00000166317|ENST00000394810|SYNPO2L	MSMS	A375_MHC_IP_R2	2	390.2886962890625	3	390.248625	1167.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.274	1	73.008	72.508	73.508	0.7345								0	0	0	0.15245	1	27426	27426		12.873	6.2491	1		+		3710	20668	2428	2466	3617	3617					0.1468938552184227
ARLASFESKEL	11	Unmodified	_ARLASFESKEL_					0	0	0			REV__ENSG00000050393|ENST00000379170|MCUR1	REV__ENSG00000050393|ENST00000379170|MCUR1	MULTI-MSMS	A375_MHC_IP_R2	2	417.1388854980469	3	417.562827	1249.66665	-0.37882	-0.00015818	2.2603	0.00094381	1.8815	0.00078563	417.8988113573488	38.683	0.56018	39.457	39.2	39.76	0.77451					19	8	3	0	0	0	0.68072	1	14274	14274		17.049	3.5299	1	2467400	+		3711	16386	2429	2467	3618	3618					0.0518045373496534
ARLDLERKV	9	Unmodified	_ARLDLERKV_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R1	1	368.2802429199219	3	367.224257	1098.65094	0.18884	6.9347E-05	-0.22584	-8.2932E-05	-0.036993	-1.3585E-05	367.2241395974521	25.434	0.86365	25.434	25.255	26.118	0					47	16	4	0	0	0	0.48411	1	7479	7479		20.581	8.4062	1	65884000			3712	1093	2430	2468	3619	3619					0.10556212008555121
ARLDLERKV	9	Unmodified	_ARLDLERKV_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	A375_MHC_IP_R2	2	367.6239318847656	3	367.224257	1098.65094	-0.23869	-8.7651E-05	-0.28013	-0.00010287	-0.51882	-0.00019052	367.22413191745727	24.745	0.60936	25.389	25.212	25.822	0.64368					33	11	3	0	0	0	0.010822	1	8162	8162		118.81	69.286	1	71584000			3713	1093	2430	2468	3620	3620					0.10556212008555121
ARLEYYLNPEK	11	Unmodified	_ARLEYYLNPEK_					0	0	0			REV__tr|U7T609|U7T609_FUSNUPeptidaseM23domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00048PE=4SV=1	REV__tr|U7T609|U7T609_FUSNUPeptidaseM23domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00048PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	466.3048095703125	3	465.913748	1394.71942	-0.93894	-0.00043747	0.21795	0.00010154	-0.72099	-0.00033592	466.2482802216435	18.955	1.3645	19.559	19.483	20.848	0.60308					49	26	2	0	0	0	0.73318	1	5806	5806		5.8681	0	1	3179900	+		3714	28851	2431	2469	3621	3621					0.03784411797755638
ARLHVPPHW	9	Unmodified	_ARLHVPPHW_					0	0	0			REV__ENST00000512760.5_1_4:79841695-79860421:-|nuORF	REV__ENST00000512760.5_1_4:79841695-79860421:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	372.30133056640625	3	371.54192	1111.60393	0.3245	0.00012057	-0.74588	-0.00027713	-0.42138	-0.00015656	371.54144328643804	34.039	0.30498	34.039	33.898	34.203	0					7	5	2	0	0	0	0.76187	1	11139	11139		7.609	4.8738	1	1453600	+		3715	25629	2432	2470	3622	3622					0.05259397248073583
ARLLIELLR	9	Unmodified	_ARLLIELLR_					0	0	0		BRD1|p.G784Afs*109|1|0.19|ENSG00000100425|chr22:49794042-49794042|C/-|frameshift_variant;nc|ENSG00000100425|O95696|BRD1;BRD1|p.V933Cfs*14|1|0.27|ENSG00000100425|chr22:49776091-49776091|C/-|frameshift_variant;ENSG00000100425|ENST00000404760|BRD1	BRD1|p.G784Afs*109|1|0.19|ENSG00000100425|chr22:49794042-49794042|C/-|frameshift_variant	BRD1|p.G784Afs*109|1|0.19|ENSG00000100425|chr22:49794042-49794042|C/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	366.2735290527344	3	366.244881	1095.71281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.363	1	23.363	22.863	23.863	0								0	0	0	0.15486	1	6398	6398		10.151	0	1				3716	249	2433	2471	3623	3623					0.16878563427690096
ARLNDGPP	8	Unmodified	_ARLNDGPP_					0	0	0		MLT1D_dup20345|chr22:17062038-17062465:-|1.1618948411281238|0.3497789998645094|1.73|463.0|1|1|sense	MLT1D_dup20345|chr22:17062038-17062465:-|1.1618948411281238|0.3497789998645094|1.73|463.0|1|1|sense	MLT1D_dup20345|chr22:17062038-17062465:-|1.1618948411281238|0.3497789998645094|1.73|463.0|1|1|sense	MSMS	A375_MHC_IP_R1	1	420.1847839355469	2	420.222134	838.429715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.738	1	49.738	49.238	50.238	0								0	0	0	0.16876	1	17597	17597		5.2307	0	1				3717	14386	2434	2472	3624	3624					0.004037720320980043
ARLRDKTAF	9	Unmodified	_ARLRDKTAF_					0	0	0			REV__nc|ENSG00000103495|P56270-4|MAZ	REV__nc|ENSG00000103495|P56270-4|MAZ	MSMS	A375_MHC_IP_R2	2	359.9422607421875	3	359.876969	1076.60908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.471	1	38.242	37.742	38.742	0.7709								0	0	0	0.15486	1	13711	13711		7.609	0	1		+		3718	17281	2435	2473	3625	3625					0.07383656320052978
ARLVRRRHRPQ	11	Unmodified	_ARLVRRRHRPQ_					0	0	0			REV__ENSG00000059588|ENST00000040877|TARBP1	REV__ENSG00000059588|ENST00000040877|TARBP1	MULTI-MSMS	A375_MHC_IP_R1	1	482.69891357421875	3	482.299265	1443.87596	-0.67184	-0.00032403	0.29472	0.00014214	-0.37711	-0.00018188	482.2992506115231	138.03	1.3223	138.03	137.79	139.12	0					61	25	3	0	0	0	0.73925	1	53297	53297		0.08335	0	1	18933000	+		3719	16441	2436	2474	3626	3626					0.17178179322127107
ARLYSLMAKP	10	Unmodified	_ARLYSLMAKP_					0	0	0			REV__LRRK1|p.I1366Nfs*21|1|0.31|ENSG00000154237|chr15:101054981-101054982|-/A|frameshift_variant	REV__LRRK1|p.I1366Nfs*21|1|0.31|ENSG00000154237|chr15:101054981-101054982|-/A|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	383.6170654296875	3	383.886476	1148.6376	0.47302	0.00018158	2.7301	0.0010481	3.2032	0.0012297	384.2225235575708	42.715	1.2678	42.715	42.183	43.451	0					38	24	2	0	0	0	0.92514	1	14841	14841		7.4771	0	1	4006500	+		3720	19871	2437	2475	3627	3627					0.06922637904949624
ARMPPGAAGW	10	Unmodified	_ARMPPGAAGW_					0	0	0		ENST00000263563.6_1_10:72238698-72285885:+|nuORF	ENST00000263563.6_1_10:72238698-72285885:+|nuORF	ENST00000263563.6_1_10:72238698-72285885:+|nuORF	MSMS	A375_MHC_IP_R1	1	507.190673828125	2	507.252911	1012.49127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.19	1	133.19	132.69	133.69	0								0	0	0	0.15508	1	51362	51362		4.3292	0.38484	1				3721	10320	2438	2476	3628	3628					-0.014476195402721714
ARNECLEVEF	10	Unmodified	_ARNECLEVEF_					0	0	0		nc|ENSG00000145700|Q8N7Z5|ANKRD31;ENSG00000145700|ENST00000506364|ANKRD31	nc|ENSG00000145700|Q8N7Z5|ANKRD31	nc|ENSG00000145700|Q8N7Z5|ANKRD31	MULTI-MSMS	A375_MHC_IP_R2	2	605.6950073242188	2	605.282063	1208.54957	-0.29582	-0.00017905	-2.3576	-0.001427	-2.6534	-0.0016061	605.2811003526654	47.745	0.15351	48.506	48.378	48.532	0.76128					4	2	2	0	0	0	0.63639	1	17885	17885		18.146	1.0335	1	592230			3722	5570	2439	2477	3629	3629					-0.04636027476317395
ARPAAELCVH	10	Unmodified	_ARPAAELCVH_					0	0	0			REV__ENST00000265022.7_1_3:185867058-185867445:-|nuORF	REV__ENST00000265022.7_1_3:185867058-185867445:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	355.94873046875	3	356.186926	1065.53895	-0.29645	-0.00010559	-0.34336	-0.0001223	-0.63981	-0.00022789	356.186863636074	23.572	0.25504	23.572	23.432	23.687	0					7	4	2	0	0	0	0.88918	1	6552	6552		11.518	9.0194	1	2218800	+		3723	23243	2440	2478	3630	3630					0.008800346599173281
ARPGFEQAI	9	Unmodified	_ARPGFEQAI_					0	0	0		ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17	ENSG00000052841|ENST00000039989|TTC17	ENSG00000052841|ENST00000039989|TTC17	MULTI-MSMS	A375_MHC_IP_R1	1	495.1636962890625	2	494.764166	987.513779	-0.36928	-0.00018271	-0.21026	-0.00010403	-0.57955	-0.00028674	494.76390863698356	43.884	0.86425	43.884	43.249	44.113	0					27	16	3	0	0	0	0.12771	1	15249	15249		45.7	9.6554	1	6706200			3724	1242	2441	2479	3631	3631					0.019523031289850223
ARPGFEQAI	9	Unmodified	_ARPGFEQAI_					0	0	0		ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17	ENSG00000052841|ENST00000039989|TTC17	ENSG00000052841|ENST00000039989|TTC17	MULTI-SECPEP	A375_MHC_IP_R2	2	495.1636962890625	2	494.764166	987.513779	-0.39345	-0.00019466	-0.62557	-0.00030951	-1.019	-0.00050417	494.7638119784739	43.028	1.1156	43.801	43.116	44.231	0.7724					28	21	2	0	0	0	0.37663	1	16008	16008		36.506	5.8697	1	7173400			3725	1242	2441	2479	3632	3632					0.019523031289850223
ARPLAGSL	8	Unmodified	_ARPLAGSL_					0	0	0			REV__ENST00000541239.5_1_13:111293886-111295180:-|nuORF	REV__ENST00000541239.5_1_13:111293886-111295180:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	393.137451171875	2	392.73742	783.460287	0.020384	8.0055E-06	0.50406	0.00019796	0.52444	0.00020597	392.73751970667547	39.466	0.35458	39.466	39.238	39.592	0					9	6	2	0	0	0	0.8824	1	13530	13530		23.148	9.6405	1	2634800	+		3726	25958	2442	2480	3633	3633					0.0598955041713225
ARPPLLREL	9	Unmodified	_ARPPLLREL_					0	0	0		ENST00000485557.5_1_6:31938644-31939452:-|nuORF;ENST00000491327.5_1_6:31938351-31939452:-|nuORF;ENSG00000204348|ENST00000337523|DXO;ENST00000478221.5_1_6:31938491-31939710:-|nuORF;ENST00000477826.5_1_6:31938644-31938935:-|nuORF;ENST00000474587.1_1_6:31938491-31939807:-|nuORF	ENST00000485557.5_1_6:31938644-31939452:-|nuORF	ENST00000485557.5_1_6:31938644-31939452:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	355.95733642578125	3	355.557348	1063.65021	0.075832	2.6962E-05	0.055422	1.9706E-05	0.13125	4.6668E-05	355.5573055337207	53.664	0.56043	53.664	53.352	53.912	0					18	10	2	0	0	0	0.6894	1	19153	19153		7.9454	5.6626	1	3132900			3727	9432	2443	2481	3634	3634					0.1209341735950602
ARPPLLREL	9	Unmodified	_ARPPLLREL_					0	0	0		ENST00000485557.5_1_6:31938644-31939452:-|nuORF;ENST00000491327.5_1_6:31938351-31939452:-|nuORF;ENSG00000204348|ENST00000337523|DXO;ENST00000478221.5_1_6:31938491-31939710:-|nuORF;ENST00000477826.5_1_6:31938644-31938935:-|nuORF;ENST00000474587.1_1_6:31938491-31939807:-|nuORF	ENST00000485557.5_1_6:31938644-31939452:-|nuORF	ENST00000485557.5_1_6:31938644-31939452:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	355.9570617675781	3	355.557348	1063.65021	-0.68111	-0.00024217	-0.015076	-5.3602E-06	-0.69619	-0.00024753	355.5572891264309	52.614	0.55609	53.366	53.083	53.639	0.75225					24	10	3	0	0	0	0.26911	1	19842	19842		32.898	19.283	1	3968000			3728	9432	2443	2481	3635	3635					0.1209341735950602
ARPRQQIRPRK	11	Unmodified	_ARPRQQIRPRK_					0	0	0			REV__ENSG00000162571|ENST00000379289|TTLL10	REV__ENSG00000162571|ENST00000379289|TTLL10	MULTI-MSMS	A375_MHC_IP_R2	2	352.36968994140625	4	352.220735	1404.85383	-0.49614	-0.00017475	-0.71081	-0.00025036	-1.207	-0.00042511	352.2204936954876	24.137	0.40738	24.78	24.55	24.958	0.64368					11	7	3	0	0	0	0.73807	1	7844	7844		1.2148	0.10508	1	1804700	+		3729	20267	2444	2482	3636	3636					0.1675995485366002
ARPVRPFVR	9	Unmodified	_ARPVRPFVR_					0	0	0			REV__ENST00000317907.8_1_2:32853147-32853201:+|nuORF	REV__ENST00000317907.8_1_2:32853147-32853201:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	366.9610290527344	3	366.561203	1096.66178	0.15424	5.654E-05	0.072058	2.6413E-05	0.2263	8.2953E-05	366.56118280637867	28.82	0.45481	28.82	28.643	29.098	0					20	8	3	0	0	0	0.17328	1	8944	8944		29.841	10.479	1	13057000	+		3730	23547	2445	2483	3637	3637					0.11731659173506159
ARPVRPFVR	9	Unmodified	_ARPVRPFVR_					0	0	0			REV__ENST00000317907.8_1_2:32853147-32853201:+|nuORF	REV__ENST00000317907.8_1_2:32853147-32853201:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	366.96099853515625	3	366.561203	1096.66178	0.049365	1.8095E-05	-0.10715	-3.9277E-05	-0.057786	-2.1182E-05	366.56115619299356	27.951	0.45692	28.63	28.401	28.858	0.67857					18	8	3	0	0	0	0.27715	1	9595	9595		23.79	4.4278	1	18624000	+		3731	23547	2445	2483	3638	3638					0.11731659173506159
ARQVDCVEY	9	Unmodified	_ARQVDCVEY_					0	0	0			REV__ENST00000487222.5_1_7:100401085-100421908:-|nuORF	REV__ENST00000487222.5_1_7:100401085-100421908:-|nuORF	MSMS	A375_MHC_IP_R1	1	541.867919921875	2	541.750398	1081.48624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.45	1	107.45	106.95	107.95	0								0	0	0	0.15486	1	39426	39426		11.64	1.4569	1		+		3732	22193	2446	2484	3639	3639					-0.05123968193561268
ARQVHIRRQRR	11	Unmodified	_ARQVHIRRQRR_					0	0	0			REV__ENST00000396426.7_1_22:42373013-42377694:+|nuORF	REV__ENST00000396426.7_1_22:42373013-42377694:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	738.8474731445312	2	738.448166	1474.88178	-0.78599	-0.00058041	0.41624	0.00030737	-0.36975	-0.00027304	738.4483195837387	132.63	0.96649	132.63	132.13	133.1	0					62	18	4	0	0	0	0.73886	1	51238	51238		0.30703	0.30703	1	17792000	+		3733	24338	2447	2485	3640	3640					0.1633327783376899
ARQVHIRRQRR	11	Unmodified	_ARQVHIRRQRR_					0	0	0			REV__ENST00000396426.7_1_22:42373013-42377694:+|nuORF	REV__ENST00000396426.7_1_22:42373013-42377694:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	738.8483276367188	2	738.448166	1474.88178	-0.79807	-0.00058933	0.34001	0.00025108	-0.45805	-0.00033825	738.4482702670025	133.49	1.4724	133.49	133.1	134.57	0					81	28	4	0	0	0	0.73886	1	51461	51461		0.30703	0	1	44509000	+		3734	24338	2447	2485	3641	3641					0.1633327783376899
ARRQGRTPPV	10	Unmodified	_ARRQGRTPPV_					0	0	0			REV__nc|ENSG00000131263|Q9NVW2-2|RLIM	REV__nc|ENSG00000131263|Q9NVW2-2|RLIM	MSMS	A375_MHC_IP_R1	1	379.92791748046875	3	379.891501	1136.65267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.526	1	23.526	23.026	24.026	0								0	0	0	0.15152	1	6476	6476		14.957	2.7824	1		+		3735	18597	2448	2486	3642	3642					0.08981265817169515
ARRQKKEQRRR	11	Unmodified	_ARRQKKEQRRR_					0	0	0			REV__nc|ENSG00000110104|Q9H6F5-2|CCDC86	REV__nc|ENSG00000110104|Q9H6F5-2|CCDC86	MSMS	A375_MHC_IP_R1	1	504.6983642578125	3	504.641579	1510.90291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.918	1	80.918	80.418	81.418	0								0	0	0	0.16354	1	29565	29565		0.08335	0	1		+		3736	17617	2449	2487	3643	3643					0.16789243142602572
ARRRRLRKREL	11	Unmodified	_ARRRRLRKREL_					0	0	0			REV__ENST00000451493.5_1_13:36920782-36920917:-|nuORF	REV__ENST00000451493.5_1_13:36920782-36920917:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	377.62744140625	4	378.247284	1508.96003	0.17759	6.7171E-05	2.2884	0.00086558	2.466	0.00093275	378.49886910299443	104.16	0.30389	104.93	104.75	105.05	0.76308					6	5	2	0	0	0	1.0015	1	39423	39423		0	0	1	449570	+		3737	24892	2450	2488	3644	3644					0.2259071041903553
ARRSRIPRV	9	Unmodified	_ARRSRIPRV_					0	0	0			REV__ENSG00000135063|ENST00000303068|ENTREP1	REV__ENSG00000135063|ENST00000303068|ENTREP1	MSMS	A375_MHC_IP_R1	1	370.9765930175781	3	370.903741	1109.68939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.251	1	24.251	23.751	24.751	0								0	0	0	0.15486	1	6843	6843		1.9064	0.31409	1		+		3738	18820	2451	2489	3645	3645					0.13893562433736406
ARRWPHKRRR	10	Unmodified	_ARRWPHKRRR_					0	0	0			REV__ENST00000264607.8_1_2:239335652-239342206:+|nuORF	REV__ENST00000264607.8_1_2:239335652-239342206:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	710.8106079101562	2	709.926869	1417.83919	-0.94714	-0.0006724	0.16893	0.00011993	-0.77821	-0.00055247	709.9268365775617	143.09	0.85799	143.09	142.59	143.45	0					51	16	5	0	0	0	0.72712	1	54736	54736		0	0	1	13470000	+		3739	23238	2452	2490	3646	3646					0.14697927496195007
ARRWRRKRRLK	11	Unmodified	_ARRWRRKRRLK_					0	0	0			REV__ENSG00000224109|ENST00000417339|CENPVL3	REV__ENSG00000224109|ENST00000417339|CENPVL3	MSMS	A375_MHC_IP_R1	1	791.5109252929688	2	791.5111	1581.00765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.449	1	95.449	94.949	95.949	0								0	0	0	0.1636	1	35082	35082		0	0	1		+		3740	22708	2453	2491	3647	3647					0.2403840940983173
ARSASLRLHY	10	Unmodified	_ARSASLRLHY_					0	0	0		ENST00000360566.6_1_2:10262891-10263518:+|nuORF;ENST00000461327.5_1_2:10262891-10263119:+|nuORF	ENST00000360566.6_1_2:10262891-10263518:+|nuORF	ENST00000360566.6_1_2:10262891-10263518:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	587.1253662109375	2	587.327996	1172.64144	-0.51655	-0.00030338	1.0223	0.0006004	0.5057	0.00029701	587.8290827491436	108.79	0.86707	109.54	109.06	109.93	0.74684					37	16	3	0	0	0	0.91909	1	41006	41006		13.906	0.86358	1	969350			3741	11032	2454	2492	3648	3648					0.06202443723032047
ARSPALQVL	9	Unmodified	_ARSPALQVL_					0	0	0		ENST00000480102.1_1_2:86352635-86354493:+|nuORF;ENST00000484203.5_1_2:86348636-86354493:+|nuORF;ENSG00000132300|ENST00000254630|PTCD3	ENST00000480102.1_1_2:86352635-86354493:+|nuORF	ENST00000480102.1_1_2:86352635-86354493:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	477.1802673339844	2	477.790184	953.565815	-0.36083	-0.0001724	0.21171	0.00010115	-0.14912	-7.1248E-05	477.79017676365993	56.437	0.45571	56.437	56.143	56.599	0					13	8	2	0	0	0	0.69381	1	20197	20197		15.248	8.5253	1	1007100			3742	4388	2455	2493	3649	3649					0.08717466542748298
ARTFRREKRAE	11	Unmodified	_ARTFRREKRAE_					0	0	0		nc|ENSG00000164362|O14746-3|TERT;ENSG00000164362|ENST00000310581|TERT;nc|ENSG00000164362|O14746-4|TERT;nc|ENSG00000164362|O14746-2|TERT	nc|ENSG00000164362|O14746-3|TERT	nc|ENSG00000164362|O14746-3|TERT	MULTI-MSMS	A375_MHC_IP_R1	1	710.7993774414062	2	710.400015	1418.78548	-0.83119	-0.00059048	-0.40253	-0.00028596	-1.2337	-0.00087644	710.3993405914069	132.05	1.0602	132.05	131.48	132.54	0					61	20	4	0	0	0	0.73494	1	50998	50998		4.1895	1.1943	1	16185000			3743	6833	2456	2494	3650	3650					0.0928366548316717
ARTKEKFNVP	10	Unmodified	_ARTKEKFNVP_					0	0	0		tr|U7ST66|U7ST66_FUSNU2-dehydro-3-deoxyphosphooctonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kdsAPE=3SV=1	tr|U7ST66|U7ST66_FUSNU2-dehydro-3-deoxyphosphooctonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kdsAPE=3SV=1	tr|U7ST66|U7ST66_FUSNU2-dehydro-3-deoxyphosphooctonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kdsAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	396.94024658203125	3	397.227779	1188.66151	-0.1712	-6.8005E-05	-0.8669	-0.00034435	-1.0381	-0.00041236	397.2271856583502	19.843	0.50899	19.843	19.471	19.98	0					13	9	2	0	0	0	0.92832	1	4855	4855		3.0723	0	1	1270500			3744	29661	2457	2495	3651	3651					0.07472194663000664
ARVLDSRV	8	Unmodified	_ARVLDSRV_					0	0	0		nc|ENSG00000006118|Q24JP5-4|TMEM132A;ENSG00000006118|ENST00000453848|TMEM132A;nc|ENSG00000006118|Q24JP5-2|TMEM132A	nc|ENSG00000006118|Q24JP5-4|TMEM132A	nc|ENSG00000006118|Q24JP5-4|TMEM132A	MSMS	A375_MHC_IP_R1	1	458.3211364746094	2	458.272158	914.529764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.475	1	60.475	59.975	60.975	0								0	0	0	0.16876	1	21772	21772		15.847	1.2655	1				3745	908	2458	2496	3652	3652					0.06908009365906764
ARVLQYREL	9	Unmodified	_ARVLQYREL_					0	0	0		ENSG00000124194|ENST00000342560|GDAP1L1;nc|ENSG00000124194|Q96MZ0-4|GDAP1L1	ENSG00000124194|ENST00000342560|GDAP1L1	ENSG00000124194|ENST00000342560|GDAP1L1	MULTI-SECPEP	A375_MHC_IP_R1	1	383.627685546875	3	383.224257	1146.65094	0.084187	3.2262E-05	-0.7169	-0.00027473	-0.63272	-0.00024247	383.2237374328768	32.513	0.45272	32.513	32.282	32.734	0					16	8	3	0	0	0	0.75519	1	10425	10425		10.151	0	1	2975600			3746	3880	2459	2497	3653	3653					0.0834821200855913
ARWRRWWWRR	10	Unmodified	_ARWRRWWWRR_					0	0	0		ENST00000475204.5_1_1:70687068-70687435:+|nuORF;ENST00000370951.5_1_1:70671397-70687435:+|nuORF;ENST00000463877.1_1_1:70671397-70687435:+|nuORF;ENST00000395136.6_2_1:70687096-70687432:+|nuORF	ENST00000475204.5_1_1:70687068-70687435:+|nuORF	ENST00000475204.5_1_1:70687068-70687435:+|nuORF	MSMS	A375_MHC_IP_R1	1	807.8431396484375	2	807.942519	1613.87049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.224	1	82.224	81.724	82.724	0								0	0	0	0.15637	1	30064	30064		0	0	1				3747	11161	2460	2498	3654	3654					0.08810500530262289
ARYAVRRSL	9	Unmodified	_ARYAVRRSL_					0	0	0		ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	MSMS	A375_MHC_IP_R2	2	364.6107177734375	3	364.552597	1090.63596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.394	1	44.166	43.666	44.666	0.7724								0	0	0	0.15486	1	16166	16166		7.1017	2.2047	1				3748	8120	2461	2499	3655	3655					0.09426764931231446
ARYPNGVVV	9	Unmodified	_ARYPNGVVV_					0	0	0		ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000564994.5_1_15:42452954-42453724:-|nuORF;ENST00000562258.5_1_15:42452954-42456706:-|nuORF	ENSG00000166887|ENST00000318006|VPS39	ENSG00000166887|ENST00000318006|VPS39	MULTI-MSMS	A375_MHC_IP_R1	1	488.1744079589844	2	487.774534	973.534515	-0.36275	-0.00017694	0.67398	0.00032875	0.31124	0.00015181	487.7750371247561	41.906	0.71354	41.906	41.571	42.285	0					35	13	4	0	0	0	0.034481	2	14516	14495;14516		71.134	40.909	1	28081000			3749	7127	2462	2500	3656;3657	3657					0.046688935086763195
ARYPNGVVV	9	Unmodified	_ARYPNGVVV_					0	0	0		ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000564994.5_1_15:42452954-42453724:-|nuORF;ENST00000562258.5_1_15:42452954-42456706:-|nuORF	ENSG00000166887|ENST00000318006|VPS39	ENSG00000166887|ENST00000318006|VPS39	MULTI-MSMS	A375_MHC_IP_R2	2	488.1741027832031	2	487.774534	973.534515	-0.83114	-0.00040541	0.86357	0.00042123	0.032425	1.5816E-05	487.7752184899046	41.144	0.91412	41.918	41.335	42.249	0.77451					39	17	4	0	0	0	0.067501	1	15239	15239		57.471	2.6978	1	23694000			3750	7127	2462	2500	3658	3658					0.046688935086763195
ASAATTRQC	9	Unmodified	_ASAATTRQC_					0	0	0		chr2:223980209-223980311|169|274.15|0.13|11.03|-|2|None,SERPINE2|1	chr2:223980209-223980311|169|274.15|0.13|11.03|-|2|None,SERPINE2|1	chr2:223980209-223980311|169|274.15|0.13|11.03|-|2|None,SERPINE2|1	MSMS	A375_MHC_IP_R2	2	454.6531066894531	2	454.716359	907.418164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.623	1	33.36	32.86	33.86	0.73692								0	0	0	0.14905	1	11628	11628		23.148	1.4018	1				3751	462	2463	2501	3659	3659					-0.039247930535452724
ASAAVRVAY	9	Unmodified	_ASAAVRVAY_					0	0	0		ENST00000427191.6_1_4:87515508-87515601:+|nuORF	ENST00000427191.6_1_4:87515508-87515601:+|nuORF	ENST00000427191.6_1_4:87515508-87515601:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	454.65338134765625	2	454.253434	906.492316	-0.22612	-0.00010271	-0.088948	-4.0405E-05	-0.31507	-0.00014312	454.2533327883223	33.416	0.55856	33.416	33.14	33.698	0					20	10	3	0	0	0	0.022401	1	10888	10888		99.755	51.409	1	15319000			3752	11817	2464	2502	3660	3660					0.03532918100279403
ASAAVRVAY	9	Unmodified	_ASAAVRVAY_					0	0	0		ENST00000427191.6_1_4:87515508-87515601:+|nuORF	ENST00000427191.6_1_4:87515508-87515601:+|nuORF	ENST00000427191.6_1_4:87515508-87515601:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	454.6531066894531	2	454.253434	906.492316	-0.28148	-0.00012786	-0.14523	-6.5971E-05	-0.42671	-0.00019383	454.25327673305935	32.673	0.55989	33.41	33.213	33.773	0.73692					25	10	3	0	0	0	0.16764	1	11628	11628		51.63	23.143	1	15599000			3753	11817	2464	2502	3661	3661					0.03532918100279403
ASADGTIKLW	10	Unmodified	_ASADGTIKLW_					0	0	0		ENSG00000183751|ENST00000568546|TBL3;ENST00000564171.1_1_16:2026070-2027324:+|nuORF	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	A375_MHC_IP_R1	1	531.6843872070312	2	531.284931	1060.55531	-0.5476	-0.00029093	-0.64831	-0.00034444	-1.1959	-0.00063537	531.2845904323129	77.808	0.76521	77.808	77.436	78.201	0					35	14	3	0	0	0	0.0045604	3	28342	28307;28342;28503		135.86	46.463	1	15171000			3754	8524	2465	2503	3662;3663;3664	3663					0.02745439097657254
ASADLSPYVR	10	Unmodified	_ASADLSPYVR_					0	0	0		ENSG00000132842|ENST00000255194|AP3B1;nc|ENSG00000132842|O00203-3|AP3B1	ENSG00000132842|ENST00000255194|AP3B1	ENSG00000132842|ENST00000255194|AP3B1	MULTI-SECPEP	A375_MHC_IP_R1	1	360.9609069824219	3	360.189101	1077.54547	0.21931	7.8992E-05	-0.59235	-0.00021336	-0.37304	-0.00013436	360.18887638093526	28.577	0.45544	28.577	28.39	28.845	0					14	8	2	0	0	0	0.79457	1	8777	8777		13.519	2.0008	1	4177300			3755	4457	2466	2504	3665	3665					0.009802510922781948
ASAFFTYVSLS	11	Unmodified	_ASAFFTYVSLS_					0	0	0		ENST00000377860.8_1_1:6324659-6342844:-|nuORF;nc|ENSG00000097021|O00154-6|ACOT7;nc|ENSG00000097021|O00154-4|ACOT7;nc|ENSG00000097021|O00154-5|ACOT7;ENSG00000097021|ENST00000361521|ACOT7;nc|ENSG00000097021|O00154|ACOT7	ENST00000377860.8_1_1:6324659-6342844:-|nuORF	ENST00000377860.8_1_1:6324659-6342844:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	398.95458984375	3	398.201007	1191.58119	0.23367	9.3046E-05	0.66277	0.00026392	0.89644	0.00035696	398.20127682502255	49.435	0.60886	49.435	49.134	49.743	0					18	11	2	0	0	0	0.99482	1	17454	17454		3.8459	0	1	1570400			3756	2065	2467	2505	3666	3666					-0.0069371145070817875
ASAGNLKPVW	10	Unmodified	_ASAGNLKPVW_					0	0	0		nc|ENSG00000161618|Q8IZ83-3|ALDH16A1;ENSG00000161618|ENST00000293350|ALDH16A1;ENST00000594549.1_1_19:49971616-49973721:+|nuORF;ENST00000599652.5_1_19:49973508-49973721:+|nuORF	nc|ENSG00000161618|Q8IZ83-3|ALDH16A1	nc|ENSG00000161618|Q8IZ83-3|ALDH16A1	MULTI-SECPEP	A375_MHC_IP_R1	1	521.65380859375	2	521.787641	1041.56073	-0.44722	-0.00023336	-1.3269	-0.00069236	-1.7741	-0.00092571	521.7875160117837	57.206	0.9181	57.206	56.65	57.568	0					25	17	2	0	0	0	0.41513	1	20436	20436		45.74	28.798	1	3882800			3757	6480	2468	2506	3667	3667					0.04161162680134112
ASAGNLKPVW	10	Unmodified	_ASAGNLKPVW_					0	0	0		nc|ENSG00000161618|Q8IZ83-3|ALDH16A1;ENSG00000161618|ENST00000293350|ALDH16A1;ENST00000594549.1_1_19:49971616-49973721:+|nuORF;ENST00000599652.5_1_19:49973508-49973721:+|nuORF	nc|ENSG00000161618|Q8IZ83-3|ALDH16A1	nc|ENSG00000161618|Q8IZ83-3|ALDH16A1	MULTI-SECPEP	A375_MHC_IP_R2	2	522.1868896484375	2	521.787641	1041.56073	-0.87121	-0.00045459	-1.7534	-0.00091489	-2.6246	-0.0013695	522.2876737588282	56.327	0.91839	57.077	56.388	57.306	0.75015					27	17	2	0	0	0	0.20239	1	21251	21251		55.235	24.598	1	4497600			3758	6480	2468	2506	3668	3668					0.04161162680134112
ASAIIIQRW	9	Unmodified	_ASAIIIQRW_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant;ASPM|p.V2172Sfs*9|1|0.47|ENSG00000066279|chr1:197102741-197102741|A/-|frameshift_variant	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	A375_MHC_IP_R1	1	529.71044921875	2	529.311284	1056.60801	-0.55666	-0.00029465	0.094672	5.0111E-05	-0.46199	-0.00024454	529.3112617713341	74.317	0.50706	74.317	73.995	74.502	0					22	9	3	0	0	0	0.011107	1	27025	27025		110.67	28.145	1	6327500			3759	1407	2469	2507	3669	3669					0.08197441951142537
ASAIIIQRW	9	Unmodified	_ASAIIIQRW_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant;ASPM|p.V2172Sfs*9|1|0.47|ENSG00000066279|chr1:197102741-197102741|A/-|frameshift_variant	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	A375_MHC_IP_R2	2	529.7106323242188	2	529.311284	1056.60801	-0.5114	-0.00027069	-0.58335	-0.00030877	-1.0947	-0.00057946	529.3109247492587	73.401	1.0718	74.137	73.581	74.653	0.73541					37	20	3	0	0	0	0.016309	1	27823	27823		92.653	26.197	1	7321800			3760	1407	2469	2507	3670	3670					0.08197441951142537
ASAIISLIIV	10	Unmodified	_ASAIISLIIV_					0	0	0			REV__tr|U7SM51|U7SM51_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02083PE=4SV=1	REV__tr|U7SM51|U7SM51_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02083PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	500.725341796875	2	500.326068	998.637583	-0.64964	-0.00032503	-0.61349	-0.00030695	-1.2631	-0.00063198	500.32574169295054	134.35	0.20178	134.35	134.22	134.42	0					8	3	3	0	0	0	0.11184	1	51822	51822		68.081	0	1	5301700	+		3761	28290	2470	2508	3671	3671					0.1382096117662286
ASALPSSATD	10	Unmodified	_ASALPSSATD_					0	0	0			REV__nc|ENSG00000197558|A2VEC9|SSPOP	REV__nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-SECPEP	A375_MHC_IP_R2	2	459.65594482421875	2	460.221997	918.429441	-0.59131	-0.00027213	-0.054231	-2.4958E-05	-0.64554	-0.00029709	460.22188901614516	35.844	1.0177	36.608	36.03	37.048	0.76338					38	19	3	0	0	0	0.8528	1	12837	12837		7.609	0	1	21931000	+		3762	27442	2471	2509	3672	3672					-0.03303692478436915
ASARAGIHLW	10	Unmodified	_ASARAGIHLW_					0	0	0		ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	MULTI-MSMS	A375_MHC_IP_R1	1	361.6015319824219	3	361.201564	1080.58286	0.32373	0.00011693	-0.19028	-6.8728E-05	0.13346	4.8205E-05	361.20142225696196	51.723	0.45747	51.723	51.525	51.982	0					14	8	2	0	0	0	0.70012	1	18387	18387		10.899	3.6097	1	2359400			3763	8079	2472	2510	3673	3673					0.04579387148555725
ASARASLVV	9	Unmodified	_ASARASLVV_					0	0	0			REV__ENST00000464873.5_2_3:127872298-127872493:-|nuORF	REV__ENST00000464873.5_2_3:127872298-127872493:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	437.9503479003906	2	437.261259	872.507966	0.0022534	9.8534E-07	0.18677	8.1668E-05	0.18902	8.2653E-05	437.2612836781658	53.818	0.55814	53.818	53.555	54.113	0					17	10	2	0	0	0	0.41434	1	19237	19237		32.786	3.7041	1	4531900	+		3764	25018	2473	2511	3674	3674					0.06661204617319072
ASAREWPLS	9	Unmodified	_ASAREWPLS_					0	0	0			REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	MULTI-MSMS	A375_MHC_IP_R1	1	509.1610412597656	2	508.761623	1015.50869	-0.35341	-0.0001798	-0.14329	-7.2902E-05	-0.4967	-0.0002527	508.7615347056985	63.257	0.87021	63.257	62.762	63.632	0					27	16	2	0	0	0	0.2002	1	22863	22863		37.974	3.5723	1	2617600	+		3765	19028	2474	2512	3675	3675					0.001559992663715093
ASAREWPLS	9	Unmodified	_ASAREWPLS_					0	0	0			REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	MULTI-SECPEP	A375_MHC_IP_R1	1	508.2041320800781	2	508.761623	1015.50869	-0.35341	-0.0001798	-0.14329	-7.2902E-05	-0.4967	-0.0002527	508.7615347056985	63.257	0.87021	63.257	62.762	63.632	0					27	16	2	0	0	0	0.53748	1	22915	22915		18.146	0	1	2617600	+		3766	19028	2474	2512	3676	3676					0.001559992663715093
ASAREWPLS	9	Unmodified	_ASAREWPLS_					0	0	0			REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	MULTI-MSMS	A375_MHC_IP_R2	2	509.1611022949219	2	508.761623	1015.50869	-0.83442	-0.00042452	-0.1968	-0.00010012	-1.0312	-0.00052464	508.7615025813124	62.545	1.063	63.287	62.622	63.685	0.74263					32	20	2	0	0	0	0.2002	1	23745	23745		37.974	8.8924	1	2640700	+		3767	19028	2474	2512	3677	3677					0.001559992663715093
ASAREWPLS	9	Unmodified	_ASAREWPLS_					0	0	0			REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	MULTI-SECPEP	A375_MHC_IP_R2	2	508.6401672363281	2	508.761623	1015.50869	-0.83442	-0.00042452	-0.1968	-0.00010012	-1.0312	-0.00052464	508.7615025813124	62.545	1.063	63.287	62.622	63.685	0.74263					32	20	2	0	0	0	0.53748	1	23637	23637		30.637	5.6456	1	2640700	+		3768	19028	2474	2512	3678	3678					0.001559992663715093
ASARLTVL	8	Unmodified	_ASARLTVL_					0	0	0		nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.R4794Afs*50|1|0.26|ENSG00000154358|chr1:228319130-228319130|C/-|frameshift_variant;ENSG00000174498|ENST00000327987|IGDCC3	nc|ENSG00000154358|Q5VST9-3|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-SECPEP	A375_MHC_IP_R1	1	416.1585388183594	2	415.758352	829.502152	0.55457	0.00023057	-0.34497	-0.00014342	0.2096	8.7143E-05	415.7581391777811	49.717	0.40665	49.717	49.49	49.896	0					12	7	2	0	0	0	0.80467	1	17607	17607		34.402	3.7652	1	1719900			3769	14690	2475	2513	3679	3679					0.08058106105647767
ASARLTVL	8	Unmodified	_ASARLTVL_					0	0	0		nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.R4794Afs*50|1|0.26|ENSG00000154358|chr1:228319130-228319130|C/-|frameshift_variant;ENSG00000174498|ENST00000327987|IGDCC3	nc|ENSG00000154358|Q5VST9-3|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MATCH	A375_MHC_IP_R2	2		2	415.758352	829.502152	-0.070389	-2.9265E-05	-0.63194	-0.00026274	-0.70233	-0.000292	415.7580717913301	48.709	0.50944	49.466	49.13	49.639	0.75736	-0.12576	-0.00010788	NaN	34.402	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1465300			3770	14690	2475	2513							0.08058106105647767
ASARTLYEV	9	Unmodified	_ASARTLYEV_					0	0	0		ENSG00000135372|ENST00000257829|NAT10;nc|ENSG00000135372|Q9H0A0-2|NAT10;NAT10|p.S464F|1|0.27|ENSG00000135372|chr11:34131402-34131402|C/T|missense_variant	ENSG00000135372|ENST00000257829|NAT10	ENSG00000135372|ENST00000257829|NAT10	MULTI-SECPEP	A375_MHC_IP_R1	1	505.6690979003906	2	505.269281	1008.52401	-0.24299	-0.00012277	0.14694	7.4243E-05	-0.096048	-4.853E-05	505.26932124443243	56.376	0.35471	56.376	56.143	56.498	0					15	6	3	0	0	0	0.41434	1	20214	20214		39.95	8.6814	1	5564500			3771	4676	2476	2514	3680	3680					0.020088660635678934
ASARTLYEV	9	Unmodified	_ASARTLYEV_					0	0	0		ENSG00000135372|ENST00000257829|NAT10;nc|ENSG00000135372|Q9H0A0-2|NAT10;NAT10|p.S464F|1|0.27|ENSG00000135372|chr11:34131402-34131402|C/T|missense_variant	ENSG00000135372|ENST00000257829|NAT10	ENSG00000135372|ENST00000257829|NAT10	MULTI-SECPEP	A375_MHC_IP_R2	2	505.6689758300781	2	505.269281	1008.52401	-0.77726	-0.00039273	0.065638	3.3165E-05	-0.71162	-0.00035956	505.26934324031447	55.59	0.40523	56.34	56.034	56.439	0.75075					19	7	3	0	0	0	0.59098	1	20995	20995		21.537	9.8967	1	5849100			3772	4676	2476	2514	3681	3681					0.020088660635678934
ASASYHISNL	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ASASYHISNL_					1	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1;ENST00000541058.1_1_12:67663497-67675834:+|nuORF	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MULTI-SECPEP	A375_MHC_IP_R1	1	553.1691284179688	2	552.769645	1103.52474	-0.55286	-0.0003056	-0.19951	-0.00011029	-0.75237	-0.00041589	552.7694859973427	75.568	0.60315	75.568	75.211	75.815	0					35	11	4	0	0	0	0.018542	1	27487	27487		114.19	74.237	1	13129000			3773	2996	2477	2515	3682	3682					-0.022883392873836783
ASASYHISNL	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ASASYHISNL_					1	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1;ENST00000541058.1_1_12:67663497-67675834:+|nuORF	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MULTI-MSMS	A375_MHC_IP_R2	2	553.6708984375	2	552.769645	1103.52474	-0.84244	-0.00046568	0.12053	6.6627E-05	-0.72191	-0.00039905	552.7696223581613	74.904	0.70841	75.641	75.264	75.973	0.73751					38	13	4	0	0	0	0.0022429	1	28382	28382		139.38	87.748	1	13426000			3774	2996	2477	2515	3683	3683					-0.022883392873836783
ASAVPSSRGWL	11	Unmodified	_ASAVPSSRGWL_					0	0	0		ENST00000536835.2_1_15:29967228-29967648:+|nuORF	ENST00000536835.2_1_15:29967228-29967648:+|nuORF	ENST00000536835.2_1_15:29967228-29967648:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	378.2887878417969	3	377.536612	1129.58801	-0.37434	-0.00014133	1.3535	0.00051099	0.97916	0.00036967	377.5372138070459	33.772	0.30367	34.525	34.399	34.702	0.75225					6	5	2	0	0	0	0.98994	1	12187	12187		7.4291	3.2396	1	978000			3775	13241	2478	2516	3684	3684					0.028396462205364514
ASCAQSKALDW	11	Unmodified	_ASCAQSKALDW_					0	0	0			REV__ENST00000395395.6_1_9:97062480-97062831:+|nuORF	REV__ENST00000395395.6_1_9:97062480-97062831:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	589.71435546875	2	590.27678	1178.53901	-0.23923	-0.00014121	-2.1328	-0.0012589	-2.372	-0.0014001	590.2744402268393	51.143	0.71131	51.143	50.764	51.475	0					28	13	3	0	0	0	0.60761	1	18121	18121		36.506	0	1	3353600	+		3776	24320	2479	2517	3685	3685					-0.04312010130752242
ASCCRINAI	9	Unmodified	_ASCCRINAI_					0	0	0			REV__ENSG00000047188|ENST00000161863|YTHDC2	REV__ENSG00000047188|ENST00000161863|YTHDC2	MULTI-SECPEP	A375_MHC_IP_R2	2	476.1307678222656	2	475.730954	949.447356	-1.0686	-0.00050835	0.3464	0.00016479	-0.72216	-0.00034355	475.73110996145556	29.661	0.5031	30.36	30.185	30.688	0.69872					16	9	2	0	0	0	0.4261	1	10392	10392		30.637	4.2953	1	7649900	+		3777	16358	2480	2518	3686	3686					-0.029389720289259458
ASCKLTQTFCV	11	Unmodified	_ASCKLTQTFCV_					0	0	0		ENSG00000168830|ENST00000305344|HTR1E	ENSG00000168830|ENST00000305344|HTR1E	ENSG00000168830|ENST00000305344|HTR1E	MULTI-MSMS	A375_MHC_IP_R1	1	601.2281494140625	2	600.791209	1199.56787	-0.59788	-0.0003592	1.8052	0.0010846	1.2073	0.00072536	600.7921637494192	66.658	0.66263	66.658	66.224	66.887	0					17	12	2	0	0	0	0.67989	1	24026	24026		17.113	0.1706	1	1742200			3778	7351	2481	2519	3687	3687					-0.023936088259915778
ASCSLVSTPEE	11	Unmodified	_ASCSLVSTPEE_					0	0	0		nc|ENSG00000146857|Q7Z7C7|STRA8;ENSG00000146857|ENST00000662584|STRA8	nc|ENSG00000146857|Q7Z7C7|STRA8	nc|ENSG00000146857|Q7Z7C7|STRA8	MSMS	A375_MHC_IP_R2	2	561.7257080078125	2	561.752804	1121.49105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.64	1	83.383	82.883	83.883	0.74293								0	0	0	0.15541	1	31393	31393		17.113	0	1				3779	5643	2482	2520	3688	3688					-0.06483128841455255
ASCSPEWGSAL	11	Unmodified	_ASCSPEWGSAL_					0	0	0		ENSG00000122180|ENST00000241651|MYOG	ENSG00000122180|ENST00000241651|MYOG	ENSG00000122180|ENST00000241651|MYOG	MULTI-MSMS	A375_MHC_IP_R2	2	554.6996459960938	2	554.242406	1106.47026	-0.76165	-0.00042214	0.82303	0.00045616	0.061384	3.4022E-05	554.242728363546	76.026	0.40575	76.767	76.487	76.893	0.74052					11	7	2	0	0	0	0.72565	1	28868	28868		13.042	1.4022	1	1479300			3780	3765	2483	2521	3689	3689					-0.07871674430452913
ASDALDKIRY	10	Unmodified	_ASDALDKIRY_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;HSP90AB1|p.I628Sfs*56|1|0.12|ENSG00000096384|chr6:44253195-44253195|A/-|frameshift_variant;nc|ENSG00000183199|Q58FF7|HSP90AB3P;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000282100|Q58FF6|HSP90AB4P	ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000282100|Q58FF6|HSP90AB4P	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-SECPEP	A375_MHC_IP_R2	2	384.9818115234375	3	384.540022	1150.59824	-0.17682	-6.7996E-05	-0.084838	-3.2623E-05	-0.26166	-0.00010062	384.53999693937106	40.302	0.40543	41.076	40.879	41.285	0.77451					12	7	2	0	0	0	0.60589	1	14936	14936		21.241	14.611	1	2299500			3781	2057;14942	2484	2522	3690	3690					0.02896209155096585
ASDAWWNVD	9	Unmodified	_ASDAWWNVD_					0	0	0			REV__nc|ENSG00000151779|A2RRP1-2|NBAS	REV__nc|ENSG00000151779|A2RRP1-2|NBAS	MULTI-MSMS	A375_MHC_IP_R2	2	532.2186279296875	2	532.227613	1062.44067	-0.68889	-0.00036665	2.9892	0.0015909	2.3003	0.0012243	532.2298948688704	76.818	0.35352	77.56	77.353	77.707	0.742					9	6	2	0	0	0	0.64808	1	29178	29178		11.64	0.81637	1	636850	+		3782	19773	2485	2523	3691	3691					-0.08804870384278729
ASDDGTVRIW	10	Unmodified	_ASDDGTVRIW_					0	0	0		nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26;ENSG00000162923|ENST00000414423|WDR26;ENST00000486652.5_1_1:224577539-224589708:-|nuORF	nc|ENSG00000162923|Q9H7D7-2|WDR26	nc|ENSG00000162923|Q9H7D7-2|WDR26	MULTI-SECPEP	A375_MHC_IP_R1	1	559.6348876953125	2	560.275095	1118.53564	-0.44904	-0.00025159	-0.48771	-0.00027325	-0.93675	-0.00052484	560.2749021908272	63.59	0.86955	63.59	63.018	63.887	0					51	16	4	0	0	0	0.043964	1	23037	23037		91.085	25.611	1	9308900			3783	6613	2486	2524	3692	3692					-0.01888936913087491
ASDDGTVRIW	10	Unmodified	_ASDDGTVRIW_					0	0	0		nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26;ENSG00000162923|ENST00000414423|WDR26;ENST00000486652.5_1_1:224577539-224589708:-|nuORF	nc|ENSG00000162923|Q9H7D7-2|WDR26	nc|ENSG00000162923|Q9H7D7-2|WDR26	MULTI-SECPEP	A375_MHC_IP_R2	2	560.2135620117188	2	560.275095	1118.53564	-0.63497	-0.00035576	-0.36545	-0.00020475	-1.0004	-0.00056051	560.2749473233088	62.835	0.96194	63.578	62.976	63.938	0.74263					52	18	4	0	0	0	0.043964	1	23751	23751		91.085	25.611	1	9528400			3784	6613	2486	2524	3693	3693					-0.01888936913087491
ASDDQTIRVW	10	Unmodified	_ASDDQTIRVW_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA;ENST00000541366.1_1_1:160303391-160312960:-|nuORF	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	A375_MHC_IP_R1	1	596.1927490234375	2	595.793652	1189.57275	-0.27703	-0.00016505	-1.0869	-0.00064755	-1.3639	-0.0008126	595.7925722111612	62.515	0.56427	62.515	62.198	62.762	0					14	10	2	0	0	0	0.013856	1	22604	22604		124.95	84.714	1	1695600			3785	3768	2487	2525	3694	3694					-0.014452653673288296
ASDDQTIRVW	10	Unmodified	_ASDDQTIRVW_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA;ENST00000541366.1_1_1:160303391-160312960:-|nuORF	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	A375_MHC_IP_R2	2	596.1931762695312	2	595.793652	1189.57275	-0.87448	-0.00052101	-0.88209	-0.00052554	-1.7566	-0.0010465	595.7929956659041	61.753	0.55385	62.495	62.27	62.824	0.74265					15	10	2	0	0	0	0.072569	1	23436	23436		85.764	60.773	1	1720000			3786	3768	2487	2525	3695	3695					-0.014452653673288296
ASDEGGGDEEE	11	Unmodified	_ASDEGGGDEEE_					0	0	0		ENSG00000188070|ENST00000433688|ZFTA	ENSG00000188070|ENST00000433688|ZFTA	ENSG00000188070|ENST00000433688|ZFTA	MSMS	A375_MHC_IP_R2	2	547.6790771484375	2	547.691455	1093.36836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.415	1	85.151	84.651	85.651	0.73601								0	0	0	0.15377	1	32089	32089		18.146	5.6148	1				3787	8881	2488	2526	3696	3696					-0.17459294039167617
ASDEPQLTHL	10	Unmodified	_ASDEPQLTHL_					0	0	0			REV__nc|ENSG00000211745|A0A539|TRBV4-2	REV__nc|ENSG00000211745|A0A539|TRBV4-2	MULTI-MSMS	A375_MHC_IP_R2	2	556.6852416992188	2	555.774928	1109.5353	-0.68861	-0.00038271	-1.3398	-0.00074462	-2.0284	-0.0011273	555.7740603855053	84.162	0.71224	84.901	84.663	85.375	0.73962					34	13	3	0	0	0	0.69306	1	32116	32116		13.906	0.86358	1	11163000	+		3788	27469	2489	2527	3697	3697					-0.015083566329394671
ASDEREGDSD	10	Unmodified	_ASDEREGDSD_					0	0	0			REV__ENSG00000183011|ENST00000575771|NAA38	REV__ENSG00000183011|ENST00000575771|NAA38	MSMS	A375_MHC_IP_R2	2	540.6900024414062	2	540.707439	1079.40033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.661	1	85.397	84.897	85.897	0.73601								0	0	0	0.14862	1	32185	32185		20.454	4.6064	1		+		3789	21725	2490	2528	3698	3698					-0.13619881565364267
ASDFITKMDY	10	Oxidation (M)	_ASDFITKM(Oxidation (M))DY_		ASDFITKM(1)DY		ASDFITKM(130)DY	0	0	1		ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN;ENST00000373807.5_1_9:124074589-124093809:+|nuORF	ENSG00000148180|ENST00000432226|GSN	ENSG00000148180|ENST00000432226|GSN	MULTI-MSMS	A375_MHC_IP_R1	1	604.1709594726562	2	603.770997	1205.52744	-0.16577	-0.00010009	-0.17847	-0.00010775	-0.34424	-0.00020784	603.7710015757268	48.028	0.75626	48.028	47.467	48.223	0					33	14	3	0	0	0	0.006963	1	16777	16777		132.22	95.714	1	4146000		+	3790	5721	2491	2529	3699	3699		307			-0.06710251944741685
ASDFITKMDY	10	Oxidation (M)	_ASDFITKM(Oxidation (M))DY_		ASDFITKM(1)DY		ASDFITKM(130)DY	0	0	1		ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN;ENST00000373807.5_1_9:124074589-124093809:+|nuORF	ENSG00000148180|ENST00000432226|GSN	ENSG00000148180|ENST00000432226|GSN	MULTI-MSMS	A375_MHC_IP_R2	2	604.1705932617188	2	603.770997	1205.52744	-0.26378	-0.00015926	-0.53916	-0.00032553	-0.80294	-0.00048479	603.77094030758	47.122	0.81528	47.883	47.563	48.378	0.76128					36	15	3	0	0	0	0.006963	1	17603	17603		132.22	97.818	1	5427100		+	3791	5721	2491	2529	3700	3700		307			-0.06710251944741685
ASDFITKMDY	10	Oxidation (M)	_ASDFITKM(Oxidation (M))DY_		ASDFITKM(1)DY		ASDFITKM(44)DY	0	0	1		ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN;ENST00000373807.5_1_9:124074589-124093809:+|nuORF	ENSG00000148180|ENST00000432226|GSN	ENSG00000148180|ENST00000432226|GSN	MULTI-SECPEP	A375_MHC_IP_R2	2	604.1707153320312	2	603.770997	1205.52744	-0.34705	-0.00020954	-0.19015	-0.00011481	-0.5372	-0.00032434	603.7708745347647	68.627	0.35358	69.362	69.171	69.525	0.73511					12	6	2	0	0	0	0.5901	1	26048	26048		44.392	16.763	1	1514100		+	3792	5721	2491	2529	3701	3701		307			-0.06710251944741685
ASDFITKMDY	10	Oxidation (M)	_ASDFITKM(Oxidation (M))DY_					0	0	1		ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN;ENST00000373807.5_1_9:124074589-124093809:+|nuORF	ENSG00000148180|ENST00000432226|GSN	ENSG00000148180|ENST00000432226|GSN	MULTI-MATCH	A375_MHC_IP_R1	1		2	603.770997	1205.52744	0.106	6.4001E-05	-1.5447	-0.00093266	-1.4387	-0.00086866	603.7698268990225	69.32	0.45865	69.32	69.07	69.529	0	-0.021098	-0.0013245	NaN	44.392	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	863490		+	3793	5721	2491	2529				307			-0.06710251944741685
ASDFITKMDY	10	Unmodified	_ASDFITKMDY_					0	0	0		ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN;ENST00000373807.5_1_9:124074589-124093809:+|nuORF	ENSG00000148180|ENST00000432226|GSN	ENSG00000148180|ENST00000432226|GSN	MULTI-SECPEP	A375_MHC_IP_R1	1	596.1735229492188	2	595.773539	1189.53253	0.035512	2.1157E-05	-0.17463	-0.00010404	-0.13912	-8.2882E-05	595.7734634913148	69.249	0.50914	69.249	69.02	69.529	0					23	9	4	0	0	0	0.017076	1	25111	25111		121.93	91.293	1	10052000		+	3794	5721	2491	2530	3702	3702					-0.05465948082132854
ASDFITKMDY	10	Unmodified	_ASDFITKMDY_					0	0	0		ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN;ENST00000373807.5_1_9:124074589-124093809:+|nuORF	ENSG00000148180|ENST00000432226|GSN	ENSG00000148180|ENST00000432226|GSN	MULTI-SECPEP	A375_MHC_IP_R2	2	596.1732788085938	2	595.773539	1189.53253	-0.45609	-0.00027172	0.043062	2.5655E-05	-0.41302	-0.00024607	595.7735124786104	68.598	0.55569	69.334	69.07	69.626	0.73511					27	10	4	0	0	0	0.026407	1	25982	25982		101.54	76.552	1	8412100		+	3795	5721	2491	2530	3703	3703					-0.05465948082132854
ASDGEPSESPH	11	Unmodified	_ASDGEPSESPH_					0	0	0		RAB11FIP1|p.P854S|1|0.52|ENSG00000156675|chr8:37872242-37872242|G/A|missense_variant	RAB11FIP1|p.P854S|1|0.52|ENSG00000156675|chr8:37872242-37872242|G/A|missense_variant	RAB11FIP1|p.P854S|1|0.52|ENSG00000156675|chr8:37872242-37872242|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	556.6856689453125	2	556.728175	1111.4418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.316	1	85.316	84.816	85.816	0								0	0	0	0.16124	1	31265	31265		12.241	3.4953	1				3796	15262	2492	2531	3704	3704					-0.10946700806016452
ASDGFETVID	10	Unmodified	_ASDGFETVID_					0	0	0			REV__ENST00000533415.5_1_17:45198303-45266605:-|nuORF	REV__ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	527.1612548828125	2	527.240386	1052.46622	-0.44203	-0.00023306	-0.21876	-0.00011534	-0.66079	-0.0003484	527.2402350842023	62.946	0.70678	63.688	63.333	64.04	0.74263					32	13	3	0	0	0	0.60556	1	23987	23987		20.454	3.5113	1	8066200	+		3797	16104	2493	2532	3705	3705					-0.05791440652524216
ASDHDKDQF	9	Unmodified	_ASDHDKDQF_					0	0	0			REV__PLXDC1|p.E362K|1|0.37|ENSG00000161381|chr17:39078015-39078015|C/T|missense_variant	REV__PLXDC1|p.E362K|1|0.37|ENSG00000161381|chr17:39078015-39078015|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	532.6795654296875	2	531.727978	1061.4414	-0.67004	-0.00035628	-0.75108	-0.00039937	-1.4211	-0.00075565	531.7278302007653	41.962	1.019	42.737	41.997	43.016	0.77451					34	19	3	0	0	0	0.63811	1	15543	15543		12.532	6.3258	1	3718200	+		3798	27807	2494	2533	3706	3706					-0.08686075735249688
ASDHPIASY	9	Unmodified	_ASDHPIASY_					0	0	0		ENST00000582201.5_1_17:62781409-62811241:-|nuORF;ENSG00000225190|ENST00000430334|PLEKHM1	ENST00000582201.5_1_17:62781409-62811241:-|nuORF;ENSG00000225190|ENST00000430334|PLEKHM1	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	481.12432861328125	2	480.724707	959.43486	-0.59467	-0.00028587	0.11346	5.4541E-05	-0.48121	-0.00023133	480.72475911418815	27.861	0.40373	27.861	27.684	28.088	0					16	7	3	0	0	0	0.011358	1	8519	8519		96.285	52.426	1	5375800			3799	13689;9695	2495	2534	3707	3707					-0.0464796889596073
ASDHPIASY	9	Unmodified	_ASDHPIASY_					0	0	0		ENST00000582201.5_1_17:62781409-62811241:-|nuORF;ENSG00000225190|ENST00000430334|PLEKHM1	ENST00000582201.5_1_17:62781409-62811241:-|nuORF;ENSG00000225190|ENST00000430334|PLEKHM1	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	481.12445068359375	2	480.724707	959.43486	-0.52272	-0.00025128	0.12924	6.2131E-05	-0.39348	-0.00018915	480.72469173831183	27.256	0.40791	27.934	27.792	28.2	0.67857					12	7	3	0	0	0	0.047455	1	9319	9319		78.149	47.513	1	3079300			3800	13689;9695	2495	2534	3708	3708					-0.0464796889596073
ASDKETYELRY	11	Unmodified	_ASDKETYELRY_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	A375_MHC_IP_R1	1	458.9547119140625	3	458.88938	1373.64631	-0.15411	-7.0719E-05	-0.43485	-0.00019955	-0.58896	-0.00027027	459.2233257826322	35.09	0.61049	35.09	34.81	35.421	0					26	11	3	0	0	0	0.58393	1	11565	11565		24.564	24.564	1	14495000			3801	6688	2496	2535	3709	3709					-0.025567617155275002
ASDKETYELRY	11	Unmodified	_ASDKETYELRY_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	A375_MHC_IP_R1	1	688.2299194335938	2	687.830431	1373.64631	-0.53658	-0.00036907	0.10619	7.3041E-05	-0.43039	-0.00029603	687.8304635028003	35.083	0.50871	35.083	34.912	35.421	0					16	9	3	0	0	0	0.0012946	1	11642	11642		124.34	103.93	1	4677700			3802	6688	2496	2535	3710	3710					-0.025567617155275002
ASDKETYELRY	11	Unmodified	_ASDKETYELRY_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	A375_MHC_IP_R2	2	688.2305297851562	2	687.830431	1373.64631	-0.92064	-0.00063324	0.45843	0.00031532	-0.46221	-0.00031793	687.8305231940242	34.409	0.45991	35.161	34.904	35.364	0.75225					15	8	3	0	0	0	0.00064416	1	12414	12414		133.85	108.86	1	3757100			3803	6688	2496	2535	3711	3711					-0.025567617155275002
ASDKETYELRY	11	Unmodified	_ASDKETYELRY_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-SECPEP	A375_MHC_IP_R2	2	459.2889099121094	3	458.88938	1373.64631	-0.61463	-0.00028205	-0.32235	-0.00014792	-0.93699	-0.00042997	458.8893258600825	34.456	0.66133	35.208	34.803	35.464	0.75225					30	12	4	0	0	0	0.039942	1	12400	12400		111.53	111.53	1	13793000			3804	6688	2496	2535	3712	3712					-0.025567617155275002
ASDKLHTCMY	10	Carbamidomethyl (C)	_ASDKLHTC(Carbamidomethyl (C))MY_	ASDKLHTC(1)MY		ASDKLHTC(52)MY		0	1	0			REV__ENST00000417869.5_1_1:39988131-40011420:-|nuORF	REV__ENST00000417869.5_1_1:39988131-40011420:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	613.23095703125	2	613.270641	1224.52673	-0.63935	-0.0003921	-0.40223	-0.00024667	-1.0416	-0.00063877	613.2703979260334	23.61	0.3057	23.61	23.432	23.737	0					14	5	4	0	0	0	0.17669	1	6496	6496		51.63	9.7902	1	13688000	+		3805	24549	2497	2536	3713	3713	84				-0.0765536986546067
ASDKLHTCMY	10	Carbamidomethyl (C)	_ASDKLHTC(Carbamidomethyl (C))MY_	ASDKLHTC(1)MY		ASDKLHTC(52)MY		0	1	0			REV__ENST00000417869.5_1_1:39988131-40011420:-|nuORF	REV__ENST00000417869.5_1_1:39988131-40011420:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	613.6697998046875	2	613.270641	1224.52673	-0.90552	-0.00055533	-0.50929	-0.00031233	-1.4148	-0.00086766	613.270357923328	22.937	0.35741	23.567	23.368	23.726	0.63014					15	6	3	0	0	0	0.17669	1	7298	7298		51.63	11.68	1	7997900	+		3806	24549	2497	2536	3714	3714	84				-0.0765536986546067
ASDKLHTCMY	10	Carbamidomethyl (C)	_ASDKLHTC(Carbamidomethyl (C))MY_					0	1	0			REV__ENST00000417869.5_1_1:39988131-40011420:-|nuORF	REV__ENST00000417869.5_1_1:39988131-40011420:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	613.270641	1224.52673	-0.90552	-0.00055533	-0.50929	-0.00031233	-1.4148	-0.00086766	613.270357923328	22.937	0.35741	23.567	23.368	23.726	0.63014	-0.0216	-3.7581E-05	NaN	51.63	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7997900	+		3807	24549	2497	2536			84				-0.0765536986546067
ASDLEASFPI	10	Unmodified	_ASDLEASFPI_					0	0	0		nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1;nc|ENSG00000138759|Q86XX4-5|FRAS1;FRAS1|p.R2238Sfs*21|1|0.53|ENSG00000138759|chr4:78452305-78452306|AA/-|frameshift_variant	nc|ENSG00000138759|Q86XX4|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	A375_MHC_IP_R2	2	525.6602172851562	2	525.261122	1048.50769	-0.43626	-0.00022915	-0.54461	-0.00028606	-0.98087	-0.00051521	525.2608696746125	104.92	1.2714	105.69	105.26	106.53	0.76308					37	24	2	0	0	0	0.62155	1	39702	39702		19.257	5.3509	1	2681100			3808	5027	2498	2537	3715	3715					-0.014622598931964603
ASDLSQPDLVY	11	Unmodified	_ASDLSQPDLVY_					0	0	0		nc|ENSG00000136813|Q5VYK3|ECPAS;ENSG00000136813|ENST00000684092|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-MSMS	A375_MHC_IP_R1	1	604.7532348632812	2	604.295693	1206.57683	-0.44175	-0.00026694	2.353	0.0014219	1.9113	0.001155	604.7985814477214	83.842	0.96509	83.842	83.226	84.191	0					28	18	2	0	0	0	0.67565	1	30721	30721		17.443	4.4002	1	3199900			3809	4820	2499	2538	3716	3716					-0.018192206642879682
ASDMLQLEY	9	Oxidation (M)	_ASDM(Oxidation (M))LQLEY_		ASDM(1)LQLEY		ASDM(72)LQLEY	0	0	1		ENSG00000120696|ENST00000379483|KBTBD7;ENSG00000165572|ENST00000379485|KBTBD6	ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	MULTI-MSMS	A375_MHC_IP_R1	1	543.6441650390625	2	543.244615	1084.47468	-0.62325	-0.00033858	-0.15573	-8.4602E-05	-0.77899	-0.00042318	543.2446228512628	77.255	0.66039	77.255	76.776	77.436	0					35	12	4	0	0	0	0.033557	1	28127	28127		71.922	14.451	1	10002000			3810	3679	2500	2539	3717	3717		189			-0.06418210007564085
ASDMLQLEY	9	Oxidation (M)	_ASDM(Oxidation (M))LQLEY_		ASDM(1)LQLEY		ASDM(63)LQLEY	0	0	1		ENSG00000120696|ENST00000379483|KBTBD7;ENSG00000165572|ENST00000379485|KBTBD6	ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	MULTI-MSMS	A375_MHC_IP_R2	2	543.6441040039062	2	543.244615	1084.47468	-0.82196	-0.00044652	0.078616	4.2708E-05	-0.74334	-0.00040382	543.2447315726469	76.989	0.50634	77.732	77.504	78.01	0.74293					25	9	3	0	0	0	0.054426	1	29252	29252		62.573	14.227	1	11580000			3811	3679	2500	2539	3718	3718		189			-0.06418210007564085
ASDMLQLEY	9	Oxidation (M)	_ASDM(Oxidation (M))LQLEY_		ASDM(1)LQLEY		ASDM(120)LQLEY	0	0	1		ENSG00000120696|ENST00000379483|KBTBD7;ENSG00000165572|ENST00000379485|KBTBD6	ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	MULTI-SECPEP	A375_MHC_IP_R2	2	1085.80908203125	1	1085.48195	1084.47468	0.086568	9.3968E-05	-0.40834	-0.00044324	-0.32177	-0.00034928	1085.4814579125652	77.028	0.55817	77.771	77.504	78.062	0.74293					26	10	3	0	0	0	0.011308	1	29224	29224		117.76	56.403	1	7352000			3812	3679	2500	2539	3719	3719		189			-0.06418210007564085
ASDMLQLEY	9	Oxidation (M)	_ASDM(Oxidation (M))LQLEY_					0	0	1		ENSG00000120696|ENST00000379483|KBTBD7;ENSG00000165572|ENST00000379485|KBTBD6	ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	MULTI-MATCH	A375_MHC_IP_R1	1		1	1085.48195	1084.47468	0.13646	0.00014812	-0.38188	-0.00041452	-0.24542	-0.0002664	1085.4815245878074	77.665	0.51029	77.665	77.436	77.946	0	-0.053063	1.6543E-05	NaN	117.76	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10095000			3813	3679	2500	2539				189			-0.06418210007564085
ASDMLQLEY	9	Unmodified	_ASDMLQLEY_					0	0	0		ENSG00000120696|ENST00000379483|KBTBD7;ENSG00000165572|ENST00000379485|KBTBD6	ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	MULTI-MSMS	A375_MHC_IP_R1	1	535.6466064453125	2	535.247157	1068.47976	-0.62907	-0.00033671	1.1019	0.00058977	0.47279	0.00025306	535.247294396609	97.771	1.2147	97.771	97.137	98.352	0					68	23	5	0	0	0	0.0092471	2	35865	35865;35944		103.35	45.882	1	15249000			3814	3679	2500	2540	3720;3721	3720					-0.05173906144932516
ASDMLQLEY	9	Unmodified	_ASDMLQLEY_					0	0	0		ENSG00000120696|ENST00000379483|KBTBD7;ENSG00000165572|ENST00000379485|KBTBD6	ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	MULTI-MSMS	A375_MHC_IP_R2	2	535.6465454101562	2	535.247157	1068.47976	-1.0151	-0.0005433	0.73804	0.00039503	-0.27701	-0.00014827	535.2471363923402	97.036	1.7758	97.791	96.911	98.687	0.75586					67	34	5	0	0	0	0.029064	2	36785	36785;36811		75.761	30.061	1	17521000			3815	3679	2500	2540	3722;3723	3722					-0.05173906144932516
ASDPAGPSY	9	Unmodified	_ASDPAGPSY_					0	0	0		ENSG00000073050|ENST00000262887|XRCC1;ENST00000595789.5_1_19:44056953-44079610:-|nuORF	ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	MULTI-MSMS	A375_MHC_IP_R1	1	864.201416015625	1	864.373389	863.366112	-0.63089	-0.00054533	-0.081447	-7.0401E-05	-0.71234	-0.00061573	864.3733199756862	30.323	0.50368	30.323	30.15	30.653	0					18	9	3	0	0	0	0.41409	1	9546	9546		24.021	9.1823	1	7687200			3816	1556	2501	2541	3724	3724					-0.07103633195652037
ASDPAGPSY	9	Unmodified	_ASDPAGPSY_					0	0	0		ENSG00000073050|ENST00000262887|XRCC1;ENST00000595789.5_1_19:44056953-44079610:-|nuORF	ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	MULTI-MATCH	A375_MHC_IP_R2	2		1	864.373389	863.366112	-1.0517	-0.0009091	0.44958	0.00038861	-0.60216	-0.00052049	864.3736470131465	29.758	0.60478	30.457	30.236	30.84	0.69872	0.066957	0.00024089	NaN	24.021	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8214400			3817	1556	2501	2541							-0.07103633195652037
ASDPFFRHY	9	Unmodified	_ASDPFFRHY_					0	0	0		ENST00000477418.2_1_1:27206170-27212721:-|nuORF;ENSG00000142751|ENST00000374135|GPN2	ENST00000477418.2_1_1:27206170-27212721:-|nuORF	ENST00000477418.2_1_1:27206170-27212721:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	380.91400146484375	3	380.513807	1138.51959	0.50428	0.00019189	-0.13168	-5.0105E-05	0.3726	0.00014178	380.5137238235244	45.778	0.86134	45.778	45.434	46.295	0					53	16	5	0	0	0	0.074405	1	15986	15986		70.332	52.889	1	51801000			3818	12441	2502	2542	3725	3725					-0.04412598359340336
ASDPFFRHY	9	Unmodified	_ASDPFFRHY_					0	0	0		ENST00000477418.2_1_1:27206170-27212721:-|nuORF;ENSG00000142751|ENST00000374135|GPN2	ENST00000477418.2_1_1:27206170-27212721:-|nuORF	ENST00000477418.2_1_1:27206170-27212721:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	570.666748046875	2	570.267073	1138.51959	-0.43123	-0.00024592	-0.11311	-6.4502E-05	-0.54434	-0.00031042	570.2669045466911	44.901	0.66174	45.67	45.39	46.052	0.76909					32	12	4	0	0	0	0.0092511	3	16755	16702;16755;16765		103.42	67.292	1	12854000			3819	12441	2502	2542	3726;3727;3728	3727					-0.04412598359340336
ASDPFFRHY	9	Unmodified	_ASDPFFRHY_					0	0	0		ENST00000477418.2_1_1:27206170-27212721:-|nuORF;ENSG00000142751|ENST00000374135|GPN2	ENST00000477418.2_1_1:27206170-27212721:-|nuORF	ENST00000477418.2_1_1:27206170-27212721:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	380.91357421875	3	380.513807	1138.51959	-0.11788	-4.4853E-05	0.19213	7.3108E-05	0.074253	2.8254E-05	380.51383453743443	44.903	0.81537	45.672	45.39	46.205	0.7691					50	15	5	0	0	0	0.16595	1	16731	16731		61.602	44.159	1	68852000			3820	12441	2502	2542	3729	3729					-0.04412598359340336
ASDPFVYSLL	10	Unmodified	_ASDPFVYSLL_					0	0	0		ENSG00000154478|ENST00000284674|GPR26	ENSG00000154478|ENST00000284674|GPR26	ENSG00000154478|ENST00000284674|GPR26	MULTI-SECPEP	A375_MHC_IP_R2	2	556.6852416992188	2	556.28714	1110.55973	-0.67852	-0.00037745	-2.0893	-0.0011623	-2.7678	-0.0015397	556.2856033855555	84.397	0.61047	85.133	84.711	85.322	0.73602					19	11	3	0	0	0	0.72086	1	32116	32116		24.021	4.7636	1	2164700			3821	6091	2503	2543	3730	3730					0.008869035205634646
ASDPIHTFDLY	11	Unmodified	_ASDPIHTFDLY_					0	0	0		ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;nc|ENSG00000167716|Q562E7-2|WDR81;ENST00000464528.5_1_17:1639209-1640976:+|nuORF	ENSG00000167716|ENST00000409644|WDR81	ENSG00000167716|ENST00000409644|WDR81	MULTI-SECPEP	A375_MHC_IP_R1	1	640.2042846679688	2	639.803685	1277.59282	-0.57949	-0.00037076	0.39148	0.00025047	-0.18801	-0.00012029	639.8038140496789	93.594	0.56075	93.594	93.329	93.89	0					15	10	2	0	0	0	0.78118	1	34456	34456		20.415	5.8328	1	1630300			3822	7216	2504	2544	3731	3731					-0.03487514427388305
ASDPNSSIFL	10	Unmodified	_ASDPNSSIFL_					0	0	0		ENST00000557614.1_1_14:100803287-100808848:-|nuORF;nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1	ENST00000557614.1_1_14:100803287-100808848:-|nuORF	ENST00000557614.1_1_14:100803287-100808848:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	526.1588745117188	2	525.758746	1049.50294	-0.37832	-0.0001989	0.090088	4.7364E-05	-0.28823	-0.00015154	525.7588499304943	93.433	0.71468	93.433	93.125	93.84	0					30	13	3	0	0	0	0.29801	1	34325	34325		40.239	4.1122	1	4190600			3823	5127	2505	2545	3732	3732					-0.019831440359666885
ASDPYQVHV	9	Unmodified	_ASDPYQVHV_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	A375_MHC_IP_R1	1	508.66912841796875	2	508.245806	1014.47706	-0.30159	-0.00015328	1.6631	0.00084529	1.3616	0.000692	508.2456345742727	42.386	0.80798	42.386	41.982	42.79	0					53	15	5	0	0	0	0.0095277	2	14659	14659;14681		108	36.075	1	73203000			3824	1197	2506	2546	3733;3734	3733					-0.029599934875591316
ASDPYQVHV	9	Unmodified	_ASDPYQVHV_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	A375_MHC_IP_R2	2	508.6689758300781	2	508.245806	1014.47706	-0.82395	-0.00041877	2.3125	0.0011753	1.4885	0.00075653	508.24578336706554	41.612	0.76349	42.387	42.047	42.811	0.77451					56	14	7	0	0	0	0.026268	3	15404	15404;15447;15507		78.149	28.109	1	75747000			3825	1197	2506	2546	3735;3736;3737	3735					-0.029599934875591316
ASDRNIVLY	9	Unmodified	_ASDRNIVLY_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	A375_MHC_IP_R1	1	526.1820678710938	2	525.782556	1049.55056	-0.34066	-0.00017911	-0.17269	-9.0795E-05	-0.51334	-0.00026991	525.782543656743	51.904	1.5249	51.904	51.322	52.847	0					124	29	6	0	0	0	0.056914	1	18343	18343		61.602	15.581	1	653990000			3826	6895	2507	2547	3738	3738					0.027765549549030766
ASDRNIVLY	9	Unmodified	_ASDRNIVLY_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	A375_MHC_IP_R2	2	525.6663208007812	2	525.782556	1049.55056	-0.59071	-0.00031059	-0.45253	-0.00023793	-1.0432	-0.00054852	525.7823841805788	51.036	3.2456	51.79	49.789	53.034	0.75406					174	63	6	0	0	0	0.035419	2	19180	19180;19339		70.332	21.986	1	544540000			3827	6895	2507	2547	3739;3740	3739					0.027765549549030766
ASDSPSVSY	9	Unmodified	_ASDSPSVSY_					0	0	0		nc|ENSG00000244694|Q6ZW05-4|PTCHD4;PTCHD4|p.E600Kfs*30|1|0.26|ENSG00000244694|chr6:47879046-47879046|C/-|frameshift_variant;ENSG00000244694|ENST00000339488|PTCHD4;nc|ENSG00000244694|Q6ZW05|PTCHD4	nc|ENSG00000244694|Q6ZW05-4|PTCHD4	nc|ENSG00000244694|Q6ZW05-4|PTCHD4	MULTI-SECPEP	A375_MHC_IP_R1	1	912.1843872070312	1	912.394518	911.387241	-0.1672	-0.00015255	0.0063605	5.8033E-06	-0.16084	-0.00014675	912.3944550711144	37.067	0.50548	37.067	36.795	37.301	0					19	9	3	0	0	0	0.11436	1	12435	12435		68.081	28.123	1	5375500			3828	9825	2508	2548	3741	3741					-0.07199667886800398
ASDSPSVSY	9	Unmodified	_ASDSPSVSY_					0	0	0		nc|ENSG00000244694|Q6ZW05-4|PTCHD4;PTCHD4|p.E600Kfs*30|1|0.26|ENSG00000244694|chr6:47879046-47879046|C/-|frameshift_variant;ENSG00000244694|ENST00000339488|PTCHD4;nc|ENSG00000244694|Q6ZW05|PTCHD4	nc|ENSG00000244694|Q6ZW05-4|PTCHD4	nc|ENSG00000244694|Q6ZW05-4|PTCHD4	MULTI-SECPEP	A375_MHC_IP_R2	2	911.6815185546875	1	912.394518	911.387241	-0.59992	-0.00054736	0.063803	5.8214E-05	-0.53612	-0.00048915	912.3944864037911	36.393	0.45667	37.163	36.953	37.41	0.7709					18	8	3	0	0	0	0.50702	1	13239	13239		32.305	6.9062	1	5748600			3829	9825	2508	2548	3742	3742					-0.07199667886800398
ASDYFDQLY	9	Unmodified	_ASDYFDQLY_					0	0	0		nc|ENSG00000172053|P47897-2|QARS1;ENSG00000172053|ENST00000306125|QARS1;ENST00000478561.5_1_3:49137386-49138086:-|nuORF	nc|ENSG00000172053|P47897-2|QARS1	nc|ENSG00000172053|P47897-2|QARS1	MULTI-MSMS	A375_MHC_IP_R1	1	560.7059326171875	2	561.242929	1120.47131	-0.42717	-0.00023975	0.041503	2.3293E-05	-0.38567	-0.00021645	561.2430639221789	103.14	0.81541	103.14	102.76	103.57	0					54	15	5	0	0	0	0.010037	3	37888	37828;37888;38030		96.285	47.939	1	12740000			3830	7675	2509	2549	3743;3744;3745	3744					-0.08411136789891316
ASDYFDQLY	9	Unmodified	_ASDYFDQLY_					0	0	0		nc|ENSG00000172053|P47897-2|QARS1;ENSG00000172053|ENST00000306125|QARS1;ENST00000478561.5_1_3:49137386-49138086:-|nuORF	nc|ENSG00000172053|P47897-2|QARS1	nc|ENSG00000172053|P47897-2|QARS1	MULTI-MSMS	A375_MHC_IP_R2	2	561.642578125	2	561.242929	1120.47131	-0.60516	-0.00033964	0.27875	0.00015645	-0.32641	-0.00018319	561.243030059888	102.49	0.91601	103.26	102.87	103.79	0.76428					48	17	4	0	0	0	0.040308	2	38779	38758;38779		68.081	39.594	1	13016000			3831	7675	2509	2549	3746;3747	3747					-0.08411136789891316
ASEAEMRLFY	10	Unmodified	_ASEAEMRLFY_					0	0	0		DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant;ENSG00000150990|ENST00000308736|DHX37	DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant	DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	608.682861328125	2	608.786981	1215.55941	-0.37024	-0.0002254	-0.62684	-0.00038161	-0.99708	-0.00060701	608.7864307032029	78.809	0.50827	79.554	79.236	79.744	0.74473					19	9	3	0	0	0	0.53116	1	29930	29930		26.021	15.947	1	2593000			3832	741	2510	2550	3748	3748					-0.039748394709477
ASEAIKGAVVG	11	Unmodified	_ASEAIKGAVVG_					0	0	0		ENSG00000113013|ENST00000297185|HSPA9;ENST00000506477.5_1_5:137906647-137911007:-|nuORF	ENSG00000113013|ENST00000297185|HSPA9	ENSG00000113013|ENST00000297185|HSPA9	MULTI-SECPEP	A375_MHC_IP_R1	1	501.684326171875	2	501.284931	1000.55531	-0.71799	-0.00035992	-0.26471	-0.00013269	-0.98269	-0.00049261	501.2848238120473	30.175	0.30231	30.175	29.999	30.301	0					7	5	2	0	0	0	0.88931	1	9589	9589		20.581	4.7337	1	4725600			3833	3122	2511	2551	3749	3749					0.05505439097657927
ASECCADLIGC	11	Unmodified	_ASECCADLIGC_					0	0	0			REV__ENSG00000112559|ENST00000230321|MDFI	REV__ENSG00000112559|ENST00000230321|MDFI	MSMS	A375_MHC_IP_R2	2	542.6710815429688	2	542.709027	1083.4035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.092	1	97.847	97.347	98.347	0.75586								0	0	0	0.16179	1	36854	36854		9.3831	1.2276	1		+		3834	17737	2512	2552	3750	3750					-0.1348636930822522
ASEDRSVRIW	10	Unmodified	_ASEDRSVRIW_					0	0	0		WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENSG00000178252|ENST00000608424|WDR6;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	407.27886962890625	3	406.879038	1217.61528	-0.43005	-0.00017498	0.46073	0.00018746	0.030678	1.2482E-05	406.87917377441875	41.83	0.56121	41.83	41.521	42.082	0					22	10	3	0	0	0	0.13001	1	14459	14459		57.204	36.333	1	8239900			3835	8149;11731;12639	2513	2553	3751	3751					0.015181297608933164
ASEDRSVRIW	10	Unmodified	_ASEDRSVRIW_					0	0	0		WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENSG00000178252|ENST00000608424|WDR6;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	407.2785949707031	3	406.879038	1217.61528	-0.24195	-9.8442E-05	-0.20922	-8.5127E-05	-0.45117	-0.00018357	406.8789078827895	41.034	0.45713	41.808	41.54	41.997	0.77451					21	8	3	0	0	0	0.11281	1	15207	15207		60.899	37.884	1	7742000			3836	8149;11731;12639	2513	2553	3752	3752					0.015181297608933164
ASEDSVLLY	9	Unmodified	_ASEDSVLLY_					0	0	0		ENSG00000159259|ENST00000314103|CHAF1B;ENST00000481458.1_1_21:37771819-37785123:+|nuORF	ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	MULTI-MSMS	A375_MHC_IP_R1	1	499.1476745605469	2	498.747847	995.481142	-0.49935	-0.00024905	-1.4516	-0.00072397	-1.9509	-0.00097302	498.747703463637	87.055	0.96425	87.055	86.629	87.593	0					43	18	4	0	0	0	0.11296	1	31875	31875		48.346	1.425	1	4226700			3837	6362	2514	2554	3753	3753					-0.016779487845155927
ASEDSVLLY	9	Unmodified	_ASEDSVLLY_					0	0	0		ENSG00000159259|ENST00000314103|CHAF1B;ENST00000481458.1_1_21:37771819-37785123:+|nuORF	ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	MULTI-SECPEP	A375_MHC_IP_R2	2	499.14801025390625	2	498.747847	995.481142	-0.37012	-0.0001846	0.084609	4.2199E-05	-0.28551	-0.0001424	498.74778843999326	86.241	0.76639	86.974	86.488	87.255	0.733					25	14	2	0	0	0	0.10969	1	32760	32760		39.957	0	1	5465400			3838	6362	2514	2554	3754	3754					-0.016779487845155927
ASEFGNHYLY	10	Unmodified	_ASEFGNHYLY_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-SECPEP	A375_MHC_IP_R2	2	601.168701171875	2	600.769645	1199.52474	-0.86607	-0.00052031	-0.48299	-0.00029017	-1.3491	-0.00081048	600.7695198116605	58.862	0.61004	59.609	59.235	59.845	0.74714					34	11	4	0	0	0	0.024081	1	22223	22223		110.67	55.172	1	12291000			3839	8958	2515	2555	3755	3755					-0.0670433928737566
ASEFGNHYLY	10	Unmodified	_ASEFGNHYLY_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MATCH	A375_MHC_IP_R1	1		2	600.769645	1199.52474	-0.35469	-0.00021309	-0.01144	-6.8727E-06	-0.36613	-0.00021996	600.7695103537953	59.593	0.76144	59.593	59.194	59.955	0	-0.0083454	0.00017915	NaN	145.13	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11663000			3840	8958	2515	2555							-0.0670433928737566
ASEFPGAQHY	10	Unmodified	_ASEFPGAQHY_					0	0	0		ENST00000566509.5_1_15:73052730-73067416:-|nuORF;nc|ENSG00000159322|Q9BRR6-5|ADPGK;ENST00000567941.5_1_15:73044684-73075795:-|nuORF;nc|ENSG00000159322|Q9BRR6-2|ADPGK;ENSG00000159322|ENST00000456471|ADPGK	ENST00000566509.5_1_15:73052730-73067416:-|nuORF	ENST00000566509.5_1_15:73052730-73067416:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	554.148681640625	2	553.748713	1105.48287	-0.53725	-0.0002975	0.29913	0.00016564	-0.23812	-0.00013186	553.7488446445327	37.7	0.76672	37.7	37.351	38.118	0					48	14	5	0	0	0	0.0097732	1	12673	12673		92.653	60.348	1	69019000			3841	6364	2516	2556	3756	3756					-0.06564894975895186
ASEKEHLE	8	Unmodified	_ASEKEHLE_					0	0	0		nc|ENSG00000133103|Q9Y2V7-2|COG6;ENSG00000133103|ENST00000455146|COG6	nc|ENSG00000133103|Q9Y2V7-2|COG6	nc|ENSG00000133103|Q9Y2V7-2|COG6	MULTI-MSMS	A375_MHC_IP_R2	2	471.6644287109375	2	471.729989	941.445425	-0.7837	-0.0003697	0.835	0.0003939	0.051304	2.4202E-05	471.7302790244111	35.627	0.4551	36.39	36.132	36.587	0.76338					13	8	2	0	0	0	0.76248	1	12826	12826		16.942	4.4107	1	1457500			3842	4485	2517	2557	3757	3757					-0.02763986241529892
ASELKALGY	9	Unmodified	_ASELKALGY_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-SECPEP	A375_MHC_IP_R1	1	476.5767517089844	2	476.260925	950.507297	-0.3786	-0.00018031	0.26768	0.00012748	-0.11093	-5.283E-05	476.26098020259053	51.536	1.2186	51.536	51.168	52.387	0					48	23	4	0	0	0	0.011066	1	18256	18256		125.53	47.38	1	23191000			3843	8001	2518	2558	3758	3758					0.030063651776117695
ASELKALGY	9	Unmodified	_ASELKALGY_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-SECPEP	A375_MHC_IP_R2	2	476.6606140136719	2	476.260925	950.507297	-0.63827	-0.00030399	0.30582	0.00014565	-0.33246	-0.00015834	476.26105567538997	50.78	1.6722	51.534	50.65	52.322	0.75406					60	32	4	0	0	0	0.011357	1	19064	19064		125.53	47.38	1	20739000			3844	8001	2518	2558	3759	3759					0.030063651776117695
ASELYTSLH	9	Unmodified	_ASELYTSLH_					0	0	0		MDN1|p.H3419Y|1|0.56|ENSG00000112159|chr6:89692775-89692775|G/A|missense_variant	MDN1|p.H3419Y|1|0.56|ENSG00000112159|chr6:89692775-89692775|G/A|missense_variant	MDN1|p.H3419Y|1|0.56|ENSG00000112159|chr6:89692775-89692775|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	511.1529541015625	2	510.753464	1019.49238	-0.67738	-0.00034598	-2.4742	-0.0012637	-3.1515	-0.0016097	510.7533646746549	42.708	1.2168	43.481	43.065	44.282	0.7724					75	23	5	0	0	0	0.077132	1	15842	15842		54.774	0	1	77292000			3845	14364	2519	2559	3760	3760					-0.016591266903787982
ASEPRNMAY	9	Oxidation (M)	_ASEPRNM(Oxidation (M))AY_		ASEPRNM(1)AY		ASEPRNM(69)AY	0	0	1		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-MSMS	A375_MHC_IP_R1	1	528.1339721679688	2	527.734748	1053.45494	-0.38195	-0.00020157	-0.6615	-0.0003491	-1.0434	-0.00055066	527.7343436330897	20.478	0.51047	20.478	20.334	20.844	0					16	9	2	0	0	0	0.037683	1	5289	5289		69.105	45.084	1	1185500			3846	5103	2520	2560	3761	3761		271			-0.06964541227648624
ASEPSAQLSY	10	Unmodified	_ASEPSAQLSY_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	A375_MHC_IP_R1	1	526.6744995117188	2	526.748379	1051.4822	-0.48865	-0.00025739	0.2364	0.00012452	-0.25225	-0.00013287	526.748493043798	50.636	1.2203	50.636	49.998	51.219	0					49	21	3	0	0	0	0.011381	1	17956	17956		121.35	75.646	1	13133000			3847	4338	2521	2561	3762	3762					-0.0414773441559646
ASEPSAQLSY	10	Unmodified	_ASEPSAQLSY_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	A375_MHC_IP_R2	2	526.6741943359375	2	526.748379	1051.4822	-0.67414	-0.0003551	0.20004	0.00010537	-0.47409	-0.00024973	526.748479787424	50.144	1.2701	50.899	50.142	51.412	0.75406					55	24	3	0	0	0	0.0036544	3	18767	18729;18767;18950		96.936	53.968	1	14326000			3848	4338	2521	2561	3763;3764;3765	3764					-0.0414773441559646
ASEQKQFHV	9	Unmodified	_ASEQKQFHV_					0	0	0			REV__ENSG00000186288|ENST00000373519|PABPC1L2A	REV__ENSG00000186288|ENST00000373519|PABPC1L2A	MULTI-SECPEP	A375_MHC_IP_R2	2	536.6103515625	2	537.272355	1072.53016	-0.91879	-0.00049364	1.0938	0.00058767	0.17502	9.4035E-05	537.2736957453894	75.109	0.9142	75.847	75.365	76.279	0.73752					41	17	4	0	0	0	0.77396	1	28353	28353		6.2058	4.146	1	11759000	+		3849	21816	2522	2562	3766	3766					-0.003206157049135072
ASERKITKLF	10	Unmodified	_ASERKITKLF_					0	0	0		tr|U7SUZ7|U7SUZ7_FUSNUDUF4357domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01067PE=4SV=1	tr|U7SUZ7|U7SUZ7_FUSNUDUF4357domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01067PE=4SV=1	tr|U7SUZ7|U7SUZ7_FUSNUDUF4357domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01067PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	397.96771240234375	3	398.239796	1191.69756	-0.029249	-1.1648E-05	-0.4264	-0.00016981	-0.45565	-0.00018146	398.2395262088474	70.229	0.75964	70.963	70.693	71.453	0.73421					33	14	3	0	0	0	0.69871	1	26644	26644		12.873	0.016656	1	4428500			3850	29781	2523	2563	3767	3767					0.10937651839822138
ASETAGSGFLY	11	Unmodified	_ASETAGSGFLY_					0	0	0		ENSG00000170832|ENST00000300896|USP32;ENST00000587651.1_1_17:58296950-58303472:-|nuORF	ENSG00000170832|ENST00000300896|USP32	ENSG00000170832|ENST00000300896|USP32	MULTI-SECPEP	A375_MHC_IP_R1	1	552.1559448242188	2	551.756204	1101.49785	-0.51909	-0.00028641	-0.27388	-0.00015112	-0.79298	-0.00043753	551.756016054332	77.7	0.86403	77.7	77.184	78.048	0					37	16	3	0	0	0	0.053978	1	28288	28288		69.105	34.703	1	6634500			3851	7544	2524	2564	3768	3768					-0.04883447898532722
ASETAGSGFLY	11	Unmodified	_ASETAGSGFLY_					0	0	0		ENSG00000170832|ENST00000300896|USP32;ENST00000587651.1_1_17:58296950-58303472:-|nuORF	ENSG00000170832|ENST00000300896|USP32	ENSG00000170832|ENST00000300896|USP32	MULTI-MSMS	A375_MHC_IP_R2	2	552.2470092773438	2	551.756204	1101.49785	-0.78029	-0.00043053	0.076977	4.2472E-05	-0.70332	-0.00038806	551.756208883208	76.96	0.70783	77.703	77.354	78.062	0.74293					35	13	3	0	0	0	0.10452	1	29276	29276		69.105	34.703	1	8310900			3852	7544	2524	2564	3769	3769					-0.04883447898532722
ASETGFLTY	9	Unmodified	_ASETGFLTY_					0	0	0		ENST00000489905.1_1_6:33248421-33255161:-|nuORF;WDR46|p.H402Lfs*101|1|0.3|ENSG00000227057|chr6:33280898-33280898|T/-|frameshift_variant;ENSG00000227057|ENST00000374617|WDR46	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	495.13433837890625	2	494.73474	987.454927	-0.57458	-0.00028426	-0.082125	-4.063E-05	-0.6567	-0.00032489	494.7346587880801	86.351	0.96261	86.351	85.768	86.73	0					47	18	4	0	0	0	0.0097736	1	31568	31568		112.59	53.914	1	28067000			3853	9707	2525	2565	3770	3770					-0.03930217956008164
ASETGFLTY	9	Unmodified	_ASETGFLTY_					0	0	0		ENST00000489905.1_1_6:33248421-33255161:-|nuORF;WDR46|p.H402Lfs*101|1|0.3|ENSG00000227057|chr6:33280898-33280898|T/-|frameshift_variant;ENSG00000227057|ENST00000374617|WDR46	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	988.3924560546875	1	988.462204	987.454927	-0.014575	-1.4406E-05	-0.12801	-0.00012653	-0.14258	-0.00014094	988.461992416275	86.3	1.7233	86.3	85.819	87.542	0					97	33	6	0	0	0	0.01001	1	31810	31810		123.45	77.43	1	360640000			3854	9707	2525	2565	3771	3771					-0.03930217956008164
ASETGFLTY	9	Unmodified	_ASETGFLTY_					0	0	0		ENST00000489905.1_1_6:33248421-33255161:-|nuORF;WDR46|p.H402Lfs*101|1|0.3|ENSG00000227057|chr6:33280898-33280898|T/-|frameshift_variant;ENSG00000227057|ENST00000374617|WDR46	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	495.13409423828125	2	494.73474	987.454927	-0.31358	-0.00015514	-0.32252	-0.00015956	-0.6361	-0.0003147	494.7345158582637	85.528	1.0171	86.264	85.831	86.848	0.73601					56	19	4	0	0	0	0.010057	2	32457	32457;32469		125.62	61.388	1	40671000			3855	9707	2525	2565	3772;3773	3772					-0.03930217956008164
ASETGFLTY	9	Unmodified	_ASETGFLTY_					0	0	0		ENST00000489905.1_1_6:33248421-33255161:-|nuORF;WDR46|p.H402Lfs*101|1|0.3|ENSG00000227057|chr6:33280898-33280898|T/-|frameshift_variant;ENSG00000227057|ENST00000374617|WDR46	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	988.3925170898438	1	988.462204	987.454927	0.16888	0.00016693	-0.46281	-0.00045747	-0.29393	-0.00029054	988.4616658088746	85.528	1.9889	86.264	85.523	87.512	0.73601					98	38	5	0	0	0	0.030038	2	32789	32712;32789		74.929	36.955	1	326120000			3856	9707	2525	2565	3774;3775	3775					-0.03930217956008164
ASEYDQIRY	9	Unmodified	_ASEYDQIRY_					0	0	0		nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2;ENSG00000064393|ENST00000406875|HIPK2	nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	MULTI-SECPEP	A375_MHC_IP_R1	1	573.1669311523438	2	572.767103	1143.51965	-0.018947	-1.0852E-05	0.12396	7.0998E-05	0.10501	6.0146E-05	572.7671292404432	43.016	1.2168	43.016	42.336	43.553	0					59	23	4	0	0	0	0.022401	1	14850	14850		110.67	44.218	1	15337000			3857	6651	2526	2566	3776	3776					-0.046366431500018734
ASFDAREQW	9	Unmodified	_ASFDAREQW_					0	0	0		ENST00000525315.5_1_8:11708209-11710963:-|nuORF;ENSG00000164733|ENST00000353047|CTSB	ENST00000525315.5_1_8:11708209-11710963:-|nuORF	ENST00000525315.5_1_8:11708209-11710963:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	555.6541137695312	2	555.254163	1108.49377	-0.53898	-0.00029927	0.37039	0.00020566	-0.16859	-9.3609E-05	555.2543610970313	50.756	0.45597	50.756	50.561	51.017	0					14	8	2	0	0	0	0.29123	1	18046	18046		31.268	11.906	1	2069200			3858	6872	2527	2567	3777	3777					-0.056134926016284226
ASFDAREQW	9	Unmodified	_ASFDAREQW_					0	0	0		ENST00000525315.5_1_8:11708209-11710963:-|nuORF;ENSG00000164733|ENST00000353047|CTSB	ENST00000525315.5_1_8:11708209-11710963:-|nuORF	ENST00000525315.5_1_8:11708209-11710963:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	555.2252807617188	2	555.254163	1108.49377	-0.97448	-0.00054108	0.24168	0.0001342	-0.73279	-0.00040689	555.2544419919382	50.16	0.60988	50.914	50.65	51.26	0.75406					18	11	2	0	0	0	0.073067	2	18834	18834;18864		55.503	31.482	1	2204500			3859	6872	2527	2567	3778;3779	3778					-0.056134926016284226
ASFFRARQTLY	11	Unmodified	_ASFFRARQTLY_					0	0	0			REV__ENSG00000179292|ENST00000327259|TMEM151A	REV__ENSG00000179292|ENST00000327259|TMEM151A	MULTI-MSMS	A375_MHC_IP_R2	2	454.3101501464844	3	453.910449	1358.70952	-0.37161	-0.00016868	-1.3048	-0.00059225	-1.6764	-0.00076092	453.909645088924	28.045	0.55826	28.723	28.452	29.01	0.67857					18	10	3	0	0	0	0.73064	1	9662	9662		8.2864	2.0521	1	4926300	+		3860	21552	2528	2568	3780	3780					0.044512685830568444
ASFFRARQTLY	11	Unmodified	_ASFFRARQTLY_					0	0	0			REV__ENSG00000179292|ENST00000327259|TMEM151A	REV__ENSG00000179292|ENST00000327259|TMEM151A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	453.910449	1358.70952	-0.37161	-0.00016868	-1.3048	-0.00059225	-1.6764	-0.00076092	453.909645088924	28.045	0.55826	28.723	28.452	29.01	0.67857	-0.035235	0.00076787	NaN	8.2864	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4926300	+		3861	21552	2528	2568							0.044512685830568444
ASFGMVNFI	9	Unmodified	_ASFGMVNFI_					0	0	0			REV__CDK8|p.P262S|1|0.36|ENSG00000132964|chr13:26393504-26393504|C/T|missense_variant	REV__CDK8|p.P262S|1|0.36|ENSG00000132964|chr13:26393504-26393504|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	494.6768798828125	2	493.244221	984.473888	-0.36335	-0.00017922	-0.14474	-7.1392E-05	-0.50809	-0.00025061	493.2442368855498	87.705	1.1705	87.705	87.34	88.51	0					46	22	4	0	0	0	0.46038	1	32217	32217		21.747	21.747	1	19264000	+		3862	15627	2529	2569	3781	3781					-0.01896959865939607
ASFGSFHLI	9	Unmodified	_ASFGSFHLI_					0	0	0		nc|ENSG00000080298|P48380-2|RFX3;ENSG00000080298|ENST00000617270|RFX3;RFX3|p.A617T|1|0.19|ENSG00000080298|chr9:3248151-3248151|C/T|missense_variant;ENST00000590778.1_1_19:5994848-5997295:-|nuORF;nc|ENSG00000087903|P48378-2|RFX2;ENSG00000087903|ENST00000303657|RFX2;ENSG00000132005|ENST00000254325|RFX1	nc|ENSG00000080298|P48380-2|RFX3;ENSG00000132005|ENST00000254325|RFX1	nc|ENSG00000080298|P48380-2|RFX3	MULTI-MSMS	A375_MHC_IP_R1	1	490.1559143066406	2	489.75581	977.497067	-0.25232	-0.00012358	0.19842	9.7175E-05	-0.053906	-2.6401E-05	489.7557940923119	98.225	0.50728	98.225	97.999	98.507	0					17	9	2	0	0	0	0.060021	1	36112	36112		60.39	10.721	1	2373700			3863	1711;4368	2530	2570	3782	3782					0.007418022430556448
ASFGSFHLI	9	Unmodified	_ASFGSFHLI_					0	0	0		nc|ENSG00000080298|P48380-2|RFX3;ENSG00000080298|ENST00000617270|RFX3;RFX3|p.A617T|1|0.19|ENSG00000080298|chr9:3248151-3248151|C/T|missense_variant;ENST00000590778.1_1_19:5994848-5997295:-|nuORF;nc|ENSG00000087903|P48378-2|RFX2;ENSG00000087903|ENST00000303657|RFX2;ENSG00000132005|ENST00000254325|RFX1	nc|ENSG00000080298|P48380-2|RFX3;ENSG00000132005|ENST00000254325|RFX1	nc|ENSG00000080298|P48380-2|RFX3	MULTI-MSMS	A375_MHC_IP_R2	2	490.1555480957031	2	489.75581	977.497067	-0.72469	-0.00035492	0.10028	4.9114E-05	-0.6244	-0.00030581	489.7557195143118	97.397	0.55913	98.153	97.822	98.381	0.75586					14	10	2	0	0	0	0.098973	1	36984	36984		50.855	16.753	1	1875700			3864	1711;4368	2530	2570	3783	3783					0.007418022430556448
ASFHNPWF	8	Unmodified	_ASFHNPWF_					0	0	0		ENST00000308511.8_1_8:22477836-22477959:+|nuORF	ENST00000308511.8_1_8:22477836-22477959:+|nuORF	ENST00000308511.8_1_8:22477836-22477959:+|nuORF	MSMS	A375_MHC_IP_R1	1	503.179931640625	2	503.232502	1004.45045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.246	1	97.246	96.746	97.746	0								0	0	0	0.16876	1	35730	35730		14.582	2.9414	1				3865	10600	2531	2571	3784	3784					-0.05159637588246824
ASFHQDSAW	9	Unmodified	_ASFHQDSAW_					0	0	0		ENSG00000134897|ENST00000257336|BIVM;ENST00000490317.1_1_13:103473357-103492212:+|nuORF;nc|ENSG00000134897|Q86UB2-2|BIVM	ENSG00000134897|ENST00000257336|BIVM	ENSG00000134897|ENST00000257336|BIVM	MULTI-MSMS	A375_MHC_IP_R2	2	525.1272583007812	2	524.727781	1047.44101	-0.5605	-0.00029411	-0.020742	-1.0884E-05	-0.58124	-0.00030499	524.7276771792216	39.453	0.30415	40.227	40.067	40.371	0.77451					8	5	2	0	0	0	0.4875	1	14614	14614		20.415	3.4722	1	1727500			3866	4620	2532	2572	3785	3785					-0.08081450664440126
ASFIGGIRW	9	Unmodified	_ASFIGGIRW_					0	0	0		nc|ENSG00000080189|Q9NQQ7-2|SLC35C2;ENSG00000080189|ENST00000372230|SLC35C2;nc|ENSG00000080189|Q9NQQ7-3|SLC35C2;ENST00000480329.5_1_20:44979343-44983832:-|nuORF	nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	MULTI-SECPEP	A375_MHC_IP_R1	1	504.17706298828125	2	503.777077	1005.5396	-0.29095	-0.00014657	-0.38294	-0.00019292	-0.67389	-0.00033949	503.7773818438974	97.414	2.0307	97.414	96.12	98.151	0					95	39	6	0	0	0	0.04038	1	35741	35741		85.642	39.621	1	32593000			3867	1708	2533	2573	3786	3786					0.037051973712891595
ASFIGGIRW	9	Unmodified	_ASFIGGIRW_					0	0	0		nc|ENSG00000080189|Q9NQQ7-2|SLC35C2;ENSG00000080189|ENST00000372230|SLC35C2;nc|ENSG00000080189|Q9NQQ7-3|SLC35C2;ENST00000480329.5_1_20:44979343-44983832:-|nuORF	nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	MULTI-SECPEP	A375_MHC_IP_R2	2	503.17950439453125	2	503.777077	1005.5396	-0.75858	-0.00038216	-0.47994	-0.00024178	-1.2385	-0.00062394	503.77749672819596	96.521	2.0284	97.277	96.556	98.585	0.75586					101	39	7	0	0	0	0.04038	1	36604	36604		85.642	45.684	1	24397000			3868	1708	2533	2573	3787	3787					0.037051973712891595
ASFIRTRLL	9	Unmodified	_ASFIRTRLL_					0	0	0		nc|nan|Q96EF9|ZHX1-C8orf76;ENSG00000189376|ENST00000276704|C8orf76	nc|nan|Q96EF9|ZHX1-C8orf76	nc|nan|Q96EF9|ZHX1-C8orf76	MSMS	A375_MHC_IP_R1	1	359.597412109375	3	359.557348	1075.65021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.287	1	28.287	27.787	28.787	0								0	0	0	0.15142	1	8706	8706		13.615	3.4643	1				3869	8983	2534	2574	3788	3788					0.11541417359512707
ASFISRDEAR	10	Unmodified	_ASFISRDEAR_					0	0	0			REV__nc|ENSG00000021826|P31327-2|CPS1	REV__nc|ENSG00000021826|P31327-2|CPS1	MSMS	A375_MHC_IP_R1	1	576.2429809570312	2	576.293819	1150.57309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.05	1	128.05	127.55	128.55	0								0	0	0	0.15372	1	49152	49152		8.7454	2.5396	1		+		3870	16270	2535	2575	3789	3789					0.003821543525191373
ASFLRLAI	8	Unmodified	_ASFLRLAI_					0	0	0		ENST00000495425.6_1_17:19458825-19480863:+|nuORF;ENSG00000142494|ENST00000270570|SLC47A1;nc|ENSG00000142494|Q96FL8-3|SLC47A1;nc|ENSG00000142494|Q96FL8-2|SLC47A1;ENST00000497548.5_1_17:19437252-19459239:+|nuORF	ENST00000495425.6_1_17:19458825-19480863:+|nuORF	ENST00000495425.6_1_17:19458825-19480863:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	446.17633056640625	2	445.776545	889.538538	-0.20583	-9.1754E-05	-0.051422	-2.2923E-05	-0.25725	-0.00011468	445.7767341009209	90.21	0.45609	90.21	89.981	90.437	0					13	8	2	0	0	0	0.93661	1	33181	33181		15.847	0	1	1259400			3871	5310	2536	2576	3790	3790					0.08934983002347963
ASFLRLAI	8	Unmodified	_ASFLRLAI_					0	0	0		ENST00000495425.6_1_17:19458825-19480863:+|nuORF;ENSG00000142494|ENST00000270570|SLC47A1;nc|ENSG00000142494|Q96FL8-3|SLC47A1;nc|ENSG00000142494|Q96FL8-2|SLC47A1;ENST00000497548.5_1_17:19437252-19459239:+|nuORF	ENST00000495425.6_1_17:19458825-19480863:+|nuORF	ENST00000495425.6_1_17:19458825-19480863:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	445.776545	889.538538	-0.29446	-0.00013126	-1.337	-0.00059601	-1.6315	-0.00072727	445.7764440714711	89.159	0.65227	89.891	89.635	90.287	0.7318	-0.15929	-0.00091912	NaN	15.847	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	886070			3872	5310	2536	2576							0.08934983002347963
ASFLTGYFV	9	Unmodified	_ASFLTGYFV_					0	0	0			REV__ENSG00000171505|ENST00000304880|OR1N1	REV__ENSG00000171505|ENST00000304880|OR1N1	MSMS	A375_MHC_IP_R1	1	502.6944580078125	2	502.758018	1003.50148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.614	1	77.614	77.114	78.114	0								0	0	0	0.15486	1	28317	28317		11.64	0	1		+		3873	21074	2537	2577	3791	3791					-0.00012733334040149202
ASFPLRNSL	9	Unmodified	_ASFPLRNSL_					0	0	0			REV__ENSG00000176809|ENST00000584306|LRRC37A3	REV__ENSG00000176809|ENST00000584306|LRRC37A3	MULTI-SECPEP	A375_MHC_IP_R1	1	503.16876220703125	2	502.779816	1003.54508	-0.32494	-0.00016337	1.2134	0.0006101	0.88851	0.00044673	502.78074663334564	70.558	0.35707	70.558	70.442	70.8	0					10	6	2	0	0	0	0.49205	1	25583	25583		21.537	4.5947	1	1206100	+		3874	21419	2538	2578	3792	3792					0.04344876163088429
ASFQAERKF	9	Unmodified	_ASFQAERKF_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-SECPEP	A375_MHC_IP_R2	2	362.2574462890625	3	361.857574	1082.55089	-0.61632	-0.00022302	1.4635	0.00052957	0.84715	0.00030655	361.85763316277075	25.661	0.8131	26.321	26.094	26.907	0.65992					28	15	3	0	0	0	0.5212	1	8598	8598		24.882	13.387	1	5285300			3875	4101	2539	2579	3793	3793					0.012919746747684258
ASFQYSKSPS	10	Unmodified	_ASFQYSKSPS_					0	0	0		nc|ENSG00000258890|Q96GE4-2|CEP95;ENSG00000258890|ENST00000556440|CEP95;ENST00000553956.6_1_17:62527116-62533894:+|nuORF	nc|ENSG00000258890|Q96GE4-2|CEP95	nc|ENSG00000258890|Q96GE4-2|CEP95	MULTI-SECPEP	A375_MHC_IP_R2	2	551.14794921875	2	551.264196	1100.51384	-1.2578	-0.00069338	0.1851	0.00010204	-1.0727	-0.00059134	551.2642235689109	52.762	0.70717	53.513	52.931	53.638	0.75105					14	13	2	0	0	0	0.88918	1	19924	19924		5.2969	0	1	2299100			3876	9923	2540	2580	3794	3794					-0.03239741661673179
ASFREKIPM	9	Unmodified	_ASFREKIPM_					0	0	0		ENST00000467963.5_3_5:889215-891867:-|nuORF	ENST00000467963.5_3_5:889215-891867:-|nuORF	ENST00000467963.5_3_5:889215-891867:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	539.687255859375	2	539.789327	1077.5641	-0.64722	-0.00034936	-0.43959	-0.00023729	-1.0868	-0.00058665	539.7890402762515	28.364	0.55544	28.364	28.088	28.643	0					17	10	2	0	0	0	0.73363	1	8741	8741		15.847	1.0089	1	10018000			3877	12292	2541	2581	3795	3795					0.028420894624787252
ASFSRRSLW	9	Unmodified	_ASFSRRSLW_					0	0	0		ENST00000302763.11_1_5:138118944-138119043:+|nuORF	ENST00000302763.11_1_5:138118944-138119043:+|nuORF	ENST00000302763.11_1_5:138118944-138119043:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	370.9330749511719	3	370.533202	1108.57778	0.25627	9.4956E-05	-0.10952	-4.0579E-05	0.14675	5.4377E-05	370.53310851296374	45.106	0.50869	45.875	45.543	46.052	0.7691					21	9	3	0	0	0	0.77948	1	16845	16845		3.8763	0	1	4917600			3878	10552	2542	2582	3796	3796					0.02783083285930843
ASFWLSAL	8	Unmodified	_ASFWLSAL_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	MULTI-SECPEP	A375_MHC_IP_R1	1	448.4860534667969	2	447.739628	893.464704	-0.42474	-0.00019017	-0.47766	-0.00021387	-0.9024	-0.00040404	447.7392726011985	26.511	0.35373	26.511	26.221	26.575	0					9	6	2	0	0	0	0.95423	1	7880	7880		7.9102	2.6795	1	1108300			3879	7244	2543	2583	3797	3797					0.013710148400264188
ASGEPLRAVQ	10	Unmodified	_ASGEPLRAVQ_					0	0	0		ENST00000430889.2_1_12:54449518-54449665:+|nuORF	ENST00000430889.2_1_12:54449518-54449665:+|nuORF	ENST00000430889.2_1_12:54449518-54449665:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	514.4328002929688	2	514.28018	1026.54581	-0.3344	-0.00017197	-1.1069	-0.00056926	-1.4413	-0.00074124	514.2795120557503	20.905	0.46096	20.905	20.587	21.048	0					10	8	2	0	0	0	0.93194	1	5391	5391		0.26902	0	1	820900			3880	11861	2544	2584	3798	3798					0.033596708121422125
ASGGKDRWP	9	Unmodified	_ASGGKDRWP_					0	0	0			REV__ENSG00000213023|ENST00000600079|SYT3	REV__ENSG00000213023|ENST00000600079|SYT3	MULTI-SECPEP	A375_MHC_IP_R1	1	972.7195434570312	1	973.485005	972.477728	0.32272	0.00031416	-0.69298	-0.0006746	-0.37026	-0.00036044	973.4851750524329	117.54	0.81033	117.54	117.16	117.97	0					20	15	2	0	0	0	0.65246	1	43284	43284		6.7232	0	1	13058000	+		3881	22609	2545	2585	3799	3799					-0.009611540478658753
ASGIHSCFV	9	Unmodified	_ASGIHSCFV_					0	0	0		ENSG00000109685|ENST00000508803|NSD2;ENST00000353275.9_2_4:1944147-1980633:+|nuORF;ENST00000505643.5_1_4:1953834-1956331:+|nuORF	ENSG00000109685|ENST00000508803|NSD2	ENSG00000109685|ENST00000508803|NSD2	MSMS	A375_MHC_IP_R1	1	460.6166687011719	2	460.71837	919.422187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.816	1	35.816	35.316	36.316	0								0	0	0	0.15486	1	11941	11941		11.64	0.14559	1				3882	2884	2546	2586	3800	3800					-0.04074703559842874
ASGIHSCFV	9	Unmodified	_ASGIHSCFV_					0	0	0		ENSG00000109685|ENST00000508803|NSD2;ENST00000353275.9_2_4:1944147-1980633:+|nuORF;ENST00000505643.5_1_4:1953834-1956331:+|nuORF	ENSG00000109685|ENST00000508803|NSD2	ENSG00000109685|ENST00000508803|NSD2	MSMS	A375_MHC_IP_R2	2	460.6168212890625	2	460.71837	919.422187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.003	1	35.767	35.267	36.267	0.76338								0	0	0	0.15486	1	12668	12668		11.64	0.14559	1				3883	2884	2546	2586	3801	3801					-0.04074703559842874
ASGLASVSLW	10	Unmodified	_ASGLASVSLW_					0	0	0			REV__nc|ENSG00000099364|Q6PCT2-2|FBXL19	REV__nc|ENSG00000099364|Q6PCT2-2|FBXL19	MULTI-SECPEP	A375_MHC_IP_R1	1	496.1659851074219	2	495.766374	989.518196	-0.40909	-0.00020281	0.00052673	2.6114E-07	-0.40856	-0.00020255	495.7664496858665	57.999	0.65956	57.999	57.669	58.328	0					19	12	2	0	0	0	0.83355	1	20851	20851		12.241	0	1	1829600	+		3884	17020	2547	2587	3802	3802					0.023017675519099612
ASGLIHRV	8	Unmodified	_ASGLIHRV_					0	0	0		ENST00000490672.1_1_1:155141918-155142388:-|nuORF;ENST00000463527.5_1_1:155141918-155144917:-|nuORF;ENST00000471891.5_1_1:155141918-155145146:-|nuORF;ENSG00000163463|ENST00000295682|KRTCAP2;nc|ENSG00000163463|Q8N6L1-2|KRTCAP2;ENST00000497317.5_1_1:155141901-155145703:-|nuORF	ENST00000490672.1_1_1:155141918-155142388:-|nuORF	ENST00000490672.1_1_1:155141918-155142388:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	427.1561279296875	2	426.756144	851.497735	-0.13001	-5.5482E-05	0.26443	0.00011285	0.13442	5.7364E-05	426.7561339093286	42.073	0.40429	42.073	41.88	42.285	0					15	7	3	0	0	0	0.46048	1	14587	14587		54.774	3.9185	1	2407000			3885	6666	2548	2588	3803	3803					0.06604641682758938
ASGLLQTL	8	Unmodified	_ASGLLQTL_					0	0	0		ENSG00000165556|ENST00000381020|CDX2	ENSG00000165556|ENST00000381020|CDX2	ENSG00000165556|ENST00000381020|CDX2	MULTI-SECPEP	A375_MHC_IP_R2	2	802.8655395507812	1	802.466895	801.459619	-0.81004	-0.00065003	0.6024	0.0004834	-0.20764	-0.00016663	802.4670632461703	91.007	0.45597	91.742	91.463	91.919	0.7345					11	8	2	0	0	0	0.10679	1	34625	34625		118.89	10.898	1	1910600			3886	6968	2549	2589	3804	3804					0.050947109774256205
ASGLLRPL	8	Unmodified	_ASGLLRPL_					0	0	0			REV__nc|ENSG00000196943|Q86U38-2|NOP9	REV__nc|ENSG00000196943|Q86U38-2|NOP9	MSMS	A375_MHC_IP_R2	2	413.6517639160156	2	413.760895	825.507237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.632	1	71.367	70.867	71.867	0.73421								0	0	0	0.16876	1	26775	26775		30.637	0	1		+		3887	22241	2550	2590	3805	3805					0.08750409968274653
ASGRFGQDF	9	Unmodified	_ASGRFGQDF_					0	0	0		nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	MULTI-MSMS	A375_MHC_IP_R1	1	493.13018798828125	2	492.730323	983.446094	0.01032	5.0848E-06	-0.16606	-8.1823E-05	-0.15574	-7.6738E-05	492.73017406751126	39.062	0.50816	39.062	38.78	39.289	0					26	9	4	0	0	0	0.019126	1	13274	13274		84.522	32.254	1	10034000			3888	4857	2551	2591	3806	3806					-0.04629146801812567
ASGRFGQDF	9	Unmodified	_ASGRFGQDF_					0	0	0		nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	MULTI-MSMS	A375_MHC_IP_R2	2	492.6741027832031	2	492.730323	983.446094	-0.8249	-0.00040645	0.22503	0.00011088	-0.59987	-0.00029557	492.7304050862378	38.211	0.46059	38.986	38.739	39.2	0.77451					21	8	3	0	0	0	0.095851	1	14134	14134		51.415	15.288	1	8812500			3889	4857	2551	2591	3807	3807					-0.04629146801812567
ASGRHGQGRSL	11	Unmodified	_ASGRHGQGRSL_					0	0	0		ENSG00000204438|ENST00000375896|GPANK1	ENSG00000204438|ENST00000375896|GPANK1	ENSG00000204438|ENST00000375896|GPANK1	MSMS	A375_MHC_IP_R2	2	375.6363830566406	3	375.867244	1124.5799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.37	1	42.145	41.645	42.645	0.77451								0	0	0	0.16273	1	15348	15348		2.084	0	1				3890	9444	2552	2592	3808	3808					0.0225951202376109
ASGSIVLQL	9	Unmodified	_ASGSIVLQL_					0	0	0		ENSG00000205863|ENST00000382137|C1QTNF9B	ENSG00000205863|ENST00000382137|C1QTNF9B	ENSG00000205863|ENST00000382137|C1QTNF9B	MULTI-MSMS	A375_MHC_IP_R2	2	444.66290283203125	2	444.263468	886.512382	-0.61815	-0.00027462	0.044285	1.9674E-05	-0.57387	-0.00025495	444.26342733952777	49.303	0.50534	50.06	49.792	50.297	0.75736					15	9	2	0	0	0	0.6324	1	18560	18560		13.042	2.9685	1	1950500			3891	9532	2553	2593	3809	3809					0.06458669040239329
ASGYFCFSEAD	11	Unmodified	_ASGYFCFSEAD_					0	0	0		CMYA5|p.S1036F|1|0.23|ENSG00000164309|chr5:79731872-79731872|C/T|missense_variant	CMYA5|p.S1036F|1|0.23|ENSG00000164309|chr5:79731872-79731872|C/T|missense_variant	CMYA5|p.S1036F|1|0.23|ENSG00000164309|chr5:79731872-79731872|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	598.6625366210938	2	598.731871	1195.44919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.58	1	110.58	110.08	111.08	0								0	0	0	0.16203	1	40544	40544		8.1555	2.4237	1				3892	544	2554	2594	3810	3810					-0.14071684529972117
ASHLSISIKI	10	Unmodified	_ASHLSISIKI_					0	0	0		ENST00000455213.6_1_8:11627262-11629042:+|nuORF;ENST00000284503.6_1_8:11627404-11629042:+|nuORF	ENST00000455213.6_1_8:11627262-11629042:+|nuORF	ENST00000455213.6_1_8:11627262-11629042:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	535.2236328125	2	534.824224	1067.63389	-1.2342	-0.00066009	0.16054	8.5859E-05	-1.0737	-0.00057423	534.8241322523488	25.255	0.2576	25.898	25.77	26.028	0.64368					7	4	2	0	0	0	0.91909	1	8454	8454		9.3831	0	1	3376700			3893	10444	2555	2595	3811	3811					0.10278291402732975
ASIAARLGTY	10	Unmodified	_ASIAARLGTY_					0	0	0		nc|ENSG00000111666|Q8WUD6-2|CHPT1;ENSG00000111666|ENST00000229266|CHPT1;ENST00000550385.1_1_12:102090725-102108674:+|nuORF	nc|ENSG00000111666|Q8WUD6-2|CHPT1	nc|ENSG00000111666|Q8WUD6-2|CHPT1	MULTI-MSMS	A375_MHC_IP_R2	2	513.157958984375	2	511.785099	1021.55564	-1.3779	-0.00070518	-0.068351	-3.4981E-05	-1.4462	-0.00074016	511.78507297171063	28.69	0.54974	29.389	29.132	29.681	0.69872					19	10	3	0	0	0	0.63336	1	9975	9975		18.373	0.23811	1	29015000			3894	3009	2556	2596	3812	3812					0.045728588175165896
ASIGPLTGV	9	Unmodified	_ASIGPLTGV_					0	0	0		nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9;ENST00000451399.5_1_6:43152048-43155921:+|nuORF;ENST00000515773.5_1_6:43152048-43164205:+|nuORF	nc|ENSG00000112659|Q8IWT3-3|CUL9	nc|ENSG00000112659|Q8IWT3-3|CUL9	MULTI-SECPEP	A375_MHC_IP_R2	2	814.8651123046875	1	814.466895	813.459619	-0.80245	-0.00065357	-0.64283	-0.00052356	-1.4453	-0.0011771	814.4663462121956	83.677	0.45958	84.417	84.099	84.559	0.73962					11	8	2	0	0	0	0.16676	1	31828	31828		58.679	12.658	1	1604800			3895	3099	2557	2597	3813	3813					0.04542710977432307
ASILRAEAF	9	Unmodified	_ASILRAEAF_					0	0	0			REV__nc|ENSG00000077684|Q6IE81-2|JADE1	REV__nc|ENSG00000077684|Q6IE81-2|JADE1	MULTI-SECPEP	A375_MHC_IP_R2	2	489.674072265625	2	489.274367	976.53418	-0.56758	-0.0002777	-0.16453	-8.0502E-05	-0.73211	-0.0003582	489.27426720123634	80.292	0.70901	81.036	80.759	81.468	0.74474					29	13	3	0	0	0	0.4261	1	30445	30445		30.637	12.49	1	15704000	+		3896	16697	2558	2598	3814	3814					0.04497473788796924
ASIWKGKEKF	10	Unmodified	_ASIWKGKEKF_					0	0	0		nc|ENSG00000167889|Q3V5L5-5|MGAT5B;nc|ENSG00000167889|Q3V5L5-2|MGAT5B;chr17:76932775-76937988|409|26.93|0.82|5.04|+|ENST00000428789|MGAT5B,MGAT5B	nc|ENSG00000167889|Q3V5L5-5|MGAT5B	nc|ENSG00000167889|Q3V5L5-5|MGAT5B	MULTI-SECPEP	A375_MHC_IP_R2	2	397.93975830078125	3	398.560758	1192.66044	-0.13138	-5.2362E-05	0.13042	5.1979E-05	-0.00096287	-3.8376E-07	398.56069490593546	32.67	0.45779	33.407	33.213	33.671	0.73692					25	8	4	0	0	0	0.75968	1	11657	11657		30.703	8.0454	1	10548000			3897	446	2559	2599	3815	3815					0.07181980294080859
ASIYRVIEV	9	Unmodified	_ASIYRVIEV_					0	0	0			REV__ENSG00000164061|ENST00000296452|BSN	REV__ENSG00000164061|ENST00000296452|BSN	MULTI-SECPEP	A375_MHC_IP_R1	1	525.1818237304688	2	525.303124	1048.5917	-0.68174	-0.00035812	1.1096	0.00058287	0.42785	0.00022475	525.3038401942428	84.622	0.46079	84.622	84.391	84.852	0					14	8	2	0	0	0	0.35487	1	31072	31072		29.082	9.8246	1	2416100	+		3898	20443	2560	2600	3816	3816					0.06934315994362805
ASKGVKLV	8	Unmodified	_ASKGVKLV_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;nc|ENSG00000077522|P35609-2|ACTN2;ENSG00000077522|ENST00000366578|ACTN2;ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-SECPEP	A375_MHC_IP_R2	2	401.63812255859375	2	401.263271	800.511988	0.12123	4.8646E-05	-0.621	-0.00024918	-0.49976	-0.00020054	401.26300592323355	46.523	0.20528	47.288	47.21	47.416	0.76519					5	3	2	0	0	0	0.92867	1	17434	17434		13.042	2.9685	1	720990			3899	1529;4242;9835	2561	2601	3817	3817					0.10375294111031508
ASKPVELRDI	10	Unmodified	_ASKPVELRDI_					0	0	0			REV__ENST00000474293.2_1_6:127775237-127796815:-|nuORF	REV__ENST00000474293.2_1_6:127775237-127796815:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	564.1048583984375	2	564.324588	1126.63462	-0.61894	-0.00034928	-0.7783	-0.00043921	-1.3972	-0.0007885	564.8251114015578	85.11	0.51166	85.11	84.647	85.159	0					12	9	2	0	0	0	0.70528	1	31203	31203		26.268	0.86883	1	933890	+		3900	22651	2562	2602	3818	3818					0.0763708605179545
ASKQRQFT	8	Unmodified	_ASKQRQFT_					0	0	0		nc|ENSG00000144357|Q6ZT12-2|UBR3	nc|ENSG00000144357|Q6ZT12-2|UBR3	nc|ENSG00000144357|Q6ZT12-2|UBR3	MULTI-MSMS	A375_MHC_IP_R1	1	483.160888671875	2	483.261791	964.509028	-0.1041	-5.0306E-05	0.6363	0.0003075	0.5322	0.00025719	483.26213769324903	109.39	1.8785	109.39	108.51	110.39	0					80	36	3	0	0	0	0.7754	1	40237	40237		11.64	1.4569	1	5388000			3901	14660	2563	2603	3819	3819					0.025354189862468957
ASKVKLAPERI	11	Unmodified	_ASKVKLAPERI_					0	0	0		ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	MULTI-SECPEP	A375_MHC_IP_R1	1	403.92767333984375	3	404.587195	1210.73976	-0.48165	-0.00019487	0.21418	8.6655E-05	-0.26747	-0.00010821	404.5872664964656	40.822	0.3527	40.822	40.66	41.013	0					14	6	3	0	0	0	0.99406	1	14129	14129		10.527	2.0832	1	2055500			3902	3187	2564	2604	3820	3820					0.14281627248215045
ASKVKLAPERI	11	Unmodified	_ASKVKLAPERI_					0	0	0		ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	MULTI-MATCH	A375_MHC_IP_R2	2		3	404.587195	1210.73976	-0.032581	-1.3182E-05	-0.30941	-0.00012518	-0.34199	-0.00013836	404.587012849166	40.022	0.35487	40.796	40.524	40.879	0.77451	-0.012676	-0.00034065	NaN	10.527	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1168000			3903	3187	2564	2604							0.14281627248215045
ASLAERLKAL	10	Unmodified	_ASLAERLKAL_					0	0	0		ENSG00000176895|ENST00000641490|OR51A7	ENSG00000176895|ENST00000641490|OR51A7	ENSG00000176895|ENST00000641490|OR51A7	MULTI-MSMS	A375_MHC_IP_R2	2	358.2882995605469	3	357.888874	1070.64479	-0.25765	-9.2211E-05	-0.34788	-0.0001245	-0.60553	-0.00021671	357.8886882079093	40.027	0.81176	40.802	40.473	41.285	0.77451					26	15	3	0	0	0	0.51689	1	14822	14822		27.088	0	1	2605700			3904	8040	2565	2605	3821	3821					0.11229693777045213
ASLDISRKW	9	Unmodified	_ASLDISRKW_					0	0	0		ENSG00000082515|ENST00000523037|MRPL22	ENSG00000082515|ENST00000523037|MRPL22	ENSG00000082515|ENST00000523037|MRPL22	MULTI-MSMS	A375_MHC_IP_R1	1	538.6984252929688	2	538.298373	1074.58219	-0.51001	-0.00027454	0.81159	0.00043688	0.30158	0.00016234	538.2987638541082	45.814	0.50896	45.814	45.534	46.043	0					16	9	2	0	0	0	0.2989	1	16046	16046		30.703	3.0746	1	3266900			3905	1762	2566	2606	3822	3822					0.047885477088584594
ASLDISRKW	9	Unmodified	_ASLDISRKW_					0	0	0		ENSG00000082515|ENST00000523037|MRPL22	ENSG00000082515|ENST00000523037|MRPL22	ENSG00000082515|ENST00000523037|MRPL22	MULTI-SECPEP	A375_MHC_IP_R1	1	359.6013488769531	3	359.201341	1074.58219	0.25896	9.3018E-05	-0.079911	-2.8704E-05	0.17905	6.4314E-05	359.2012111665028	45.763	0.55975	45.763	45.534	46.094	0					27	10	3	0	0	0	0.44554	1	16031	16031		40.725	7.8271	1	6936900			3906	1762	2566	2606	3823	3823					0.047885477088584594
ASLDISRKW	9	Unmodified	_ASLDISRKW_					0	0	0		ENSG00000082515|ENST00000523037|MRPL22	ENSG00000082515|ENST00000523037|MRPL22	ENSG00000082515|ENST00000523037|MRPL22	MULTI-SECPEP	A375_MHC_IP_R2	2	359.60113525390625	3	359.201341	1074.58219	-0.32718	-0.00011753	0.38885	0.00013967	0.061662	2.2149E-05	359.2014620504019	44.903	0.61142	45.672	45.39	46.001	0.7691					18	11	2	0	0	0	0.31976	1	16780	16780		51.488	5.4657	1	9777400			3907	1762	2566	2606	3824	3824					0.047885477088584594
ASLDISRKW	9	Unmodified	_ASLDISRKW_					0	0	0		ENSG00000082515|ENST00000523037|MRPL22	ENSG00000082515|ENST00000523037|MRPL22	ENSG00000082515|ENST00000523037|MRPL22	MULTI-SECPEP	A375_MHC_IP_R2	2	538.697998046875	2	538.298373	1074.58219	-0.9896	-0.0005327	0.57985	0.00031213	-0.40975	-0.00022057	538.298526163375	44.882	0.41037	45.651	45.39	45.8	0.7691					11	7	2	0	0	0	0.58126	1	16804	16804		33.445	17.598	1	2649600			3908	1762	2566	2606	3825	3825					0.047885477088584594
ASLDQTVRVW	10	Unmodified	_ASLDQTVRVW_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	A375_MHC_IP_R1	1	588.2144775390625	2	587.814387	1173.61422	-0.28201	-0.00016577	-0.25993	-0.00015279	-0.54194	-0.00031856	588.3158430189563	75.412	0.45343	75.412	75.16	75.614	0					12	8	2	0	0	0	0.63289	1	27515	27515		34.222	22.047	1	2277200			3909	3768	2567	2607	3826	3826					0.034359153920149765
ASLDQTVRVW	10	Unmodified	_ASLDQTVRVW_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	A375_MHC_IP_R2	2	588.2135009765625	2	587.814387	1173.61422	-0.62541	-0.00036763	0.037185	2.1858E-05	-0.58823	-0.00034577	587.814240368717	74.653	0.55818	75.39	75.163	75.721	0.73752					15	10	2	0	0	0	0.40545	1	28357	28357		47.732	31.583	1	2554400			3910	3768	2567	2607	3827	3827					0.034359153920149765
ASLISFLASP	10	Unmodified	_ASLISFLASP_					0	0	0		ENST00000349228.8_1_17:7462268-7463366:+|nuORF	ENST00000349228.8_1_17:7462268-7463366:+|nuORF	ENST00000349228.8_1_17:7462268-7463366:+|nuORF	MSMS	A375_MHC_IP_R2	2	503.22015380859375	2	503.2844	1004.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.81	1	147.83	147.33	148.33	0.018707								0	0	0	0.15596	1	57442	57442		1.4819	0	1				3911	10920	2568	2608	3828	3828					0.05215224728760859
ASLLIAIKPV	10	Unmodified	_ASLLIAIKPV_					0	0	0		nc|ENSG00000160505|Q96MN2-2|NLRP4;nc|ENSG00000160505|Q96MN2-3|NLRP4;ENSG00000160505|ENST00000301295|NLRP4	nc|ENSG00000160505|Q96MN2-2|NLRP4	nc|ENSG00000160505|Q96MN2-2|NLRP4	MSMS	A375_MHC_IP_R1	1	512.8975219726562	2	512.841885	1023.66922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.126	1	55.126	54.626	55.626	0								0	0	0	0.1552	1	19705	19705		3.9444	1.6417	1				3912	6423	2569	2609	3829	3829					0.15832953930566873
ASLLNSQYY	9	Unmodified	_ASLLNSQYY_					0	0	0		nc|ENSG00000173482|P28827|PTPRM;ENSG00000173482|ENST00000580170|PTPRM;FAM59A-PTPRM|2|fusion;FAM59A-PTPRM|1|fusion	nc|ENSG00000173482|P28827|PTPRM	nc|ENSG00000173482|P28827|PTPRM	MULTI-SECPEP	A375_MHC_IP_R1	1	529.6463623046875	2	529.761289	1057.50803	-0.56365	-0.0002986	-2.6103	-0.0013828	-3.1739	-0.0016814	529.7593550859564	74.477	0.30547	74.477	74.247	74.553	0					8	5	2	0	0	0	0.52144	1	27061	27061		23.148	7.3012	1	494700			3913	7802	2570	2610	3830	3830					-0.01842840173321747
ASLMEVAVFL	10	Oxidation (M)	_ASLM(Oxidation (M))EVAVFL_		ASLM(1)EVAVFL		ASLM(44)EVAVFL	0	0	1			REV__ENSG00000183856|ENST00000361170|IQGAP3	REV__ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	A375_MHC_IP_R2	2	548.6946411132812	2	548.291368	1094.56818	-0.58448	-0.00032046	2.24	0.0012282	1.6555	0.00090769	548.2924758028671	100.42	1.0728	101.18	100.57	101.65	0.76278					52	20	3	0	0	0	0.25271	1	37960	37960		43.858	7.3521	1	12983000	+		3914	21786	2571	2611	3831	3831		485			0.02468134165542324
ASLNEGAQFL	10	Unmodified	_ASLNEGAQFL_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;USH2A|p.V2904Tfs*33|1|0.04|ENSG00000042781|chr1:215867142-215867143|CG/-|frameshift_variant	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MULTI-MSMS	A375_MHC_IP_R2	2	526.18359375	2	525.266739	1048.51892	-0.955	-0.00050163	-0.25251	-0.00013263	-1.2075	-0.00063426	525.2666523301855	53.767	1.7846	54.518	53.688	55.473	0.75105					61	34	3	0	0	0	0.69833	1	20151	20151		13.042	0	1	23164000			3915	1177	2572	2612	3832	3832					-0.00339437799038933
ASLNVKEQV	9	Unmodified	_ASLNVKEQV_					0	0	0			REV__TTC17|p.R182K|1|0.28|ENSG00000052841|chr11:43391834-43391834|G/A|missense_variant	REV__TTC17|p.R182K|1|0.28|ENSG00000052841|chr11:43391834-43391834|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	494.67755126953125	2	494.277106	986.53966	-0.68707	-0.0003396	-2.0937	-0.0010348	-2.7807	-0.0013744	494.27795023301724	26.425	0.75973	26.425	26.118	26.878	0					30	14	3	0	0	0	0.63327	1	7891	7891		13.042	0	1	6337700	+		3916	28920	2573	2613	3833	3833					0.04585152580625618
ASLPLERTL	9	Unmodified	_ASLPLERTL_					0	0	0		ENSG00000108557|ENST00000353383|RAI1;nc|ENSG00000258436|Q7Z5J4-2|RAI1	ENSG00000108557|ENST00000353383|RAI1	ENSG00000108557|ENST00000353383|RAI1	MULTI-SECPEP	A375_MHC_IP_R1	1	500.695068359375	2	500.295299	998.576045	-0.4408	-0.00022053	-0.067545	-3.3793E-05	-0.50835	-0.00025433	500.2951759362409	64.738	0.71159	64.738	64.393	65.105	0					24	13	3	0	0	0	0.57806	1	23414	23414		24.882	8.3157	1	3219000			3917	2813	2574	2614	3834	3834					0.07670029477333173
ASLPLRVSF	9	Unmodified	_ASLPLRVSF_					0	0	0		ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1	ENSG00000104853|ENST00000337392|CLPTM1	ENSG00000104853|ENST00000337392|CLPTM1	MULTI-MSMS	A375_MHC_IP_R1	1	495.6922912597656	2	495.292559	988.570566	-0.51303	-0.0002541	0.17028	8.4338E-05	-0.34275	-0.00016976	495.2927376757412	90.159	0.80864	90.159	89.679	90.488	0					48	15	4	0	0	0	0.019126	1	33095	33095		84.522	25.843	1	27041000			3918	2542	2575	2615	3835	3835					0.07582350685515848
ASLPLRVSF	9	Unmodified	_ASLPLRVSF_					0	0	0		ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1	ENSG00000104853|ENST00000337392|CLPTM1	ENSG00000104853|ENST00000337392|CLPTM1	MULTI-MSMS	A375_MHC_IP_R2	2	495.69219970703125	2	495.292559	988.570566	-0.39071	-0.00019351	-0.41306	-0.00020458	-0.80376	-0.0003981	495.2925016505115	89.278	1.267	90.01	89.584	90.851	0.7318					55	24	4	0	0	0	0.0095341	1	33941	33941		96.936	50.915	1	26895000			3919	2542	2575	2615	3836	3836					0.07582350685515848
ASLQALHTL	9	Unmodified	_ASLQALHTL_					0	0	0			REV__ENST00000471757.5_1_2:96687909-96690664:-|nuORF	REV__ENST00000471757.5_1_2:96687909-96690664:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	477.6502990722656	2	477.274367	952.53418	-0.49456	-0.00023604	0.55937	0.00026697	0.064813	3.0933E-05	477.27427281405573	40.314	0.30602	40.314	40.1	40.406	0					7	5	2	0	0	0	0.73363	1	13809	13809		6.7232	0	1	633770	+		3920	21961	2576	2616	3837	3837					0.056014737887949195
ASLRDLAL	8	Unmodified	_ASLRDLAL_					0	0	0			REV__ENSG00000113555|ENST00000231484|PCDH12	REV__ENSG00000113555|ENST00000231484|PCDH12	MULTI-SECPEP	A375_MHC_IP_R2	2	430.15545654296875	2	429.75581	857.497067	-0.49838	-0.00021418	-0.47882	-0.00020577	-0.97719	-0.00041995	429.75558831428503	57.804	0.40769	58.553	58.272	58.679	0.74894					14	7	2	0	0	0	0.91117	1	21873	21873		21.537	0	1	1752100	+		3921	17785	2577	2617	3838	3838					0.06261802243022885
ASLRDLAL	8	Unmodified	_ASLRDLAL_					0	0	0			REV__ENSG00000113555|ENST00000231484|PCDH12	REV__ENSG00000113555|ENST00000231484|PCDH12	MULTI-MATCH	A375_MHC_IP_R1	1		2	429.75581	857.497067	-0.21719	-9.3341E-05	-0.268	-0.00011517	-0.48519	-0.00020852	429.75573151582677	58.764	0.40789	58.764	58.582	58.99	0	0.1055	8.62E-05	NaN	21.537	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	976710	+		3922	17785	2577	2617							0.06261802243022885
ASLRDSLLT	9	Unmodified	_ASLRDSLLT_					0	0	0		nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3	nc|ENSG00000064419|Q9Y5L0-5|TNPO3	nc|ENSG00000064419|Q9Y5L0-5|TNPO3	MULTI-SECPEP	A375_MHC_IP_R2	2	488.6765441894531	2	488.277106	974.53966	-0.78363	-0.00038263	0.26706	0.0001304	-0.51657	-0.00025223	488.27703974270685	50.125	0.60988	50.879	50.65	51.26	0.75406					16	11	2	0	0	0	0.63622	1	18872	18872		10.151	0.076642	1	2948200			3923	1350	2578	2618	3839	3839					0.051371525806075624
ASLSRPKSLL	10	Unmodified	_ASLSRPKSLL_					0	0	0		nc|ENSG00000134909|A7KAX9-2|ARHGAP32;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;ENST00000534357.1_1_11:128850446-128851410:-|nuORF	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-MSMS	A375_MHC_IP_R1	1	358.2886657714844	3	357.888874	1070.64479	-0.033256	-1.1902E-05	-0.41746	-0.00014941	-0.45072	-0.00016131	357.8887281049314	40.916	0.65646	40.916	40.66	41.317	0					27	12	3	0	0	0	0.58757	1	14111	14111		21.799	1.8126	1	2915500			3924	4625	2579	2619	3840	3840					0.1122969377706795
ASLVVKGTL	9	Unmodified	_ASLVVKGTL_					0	0	0			REV__ENSG00000179023|ENST00000400664|KLHDC7A	REV__ENSG00000179023|ENST00000400664|KLHDC7A	MULTI-SECPEP	A375_MHC_IP_R1	1	443.6213073730469	2	444.28166	886.548768	0.036066	1.6023E-05	-0.3433	-0.00015252	-0.30724	-0.0001365	444.2815403638061	45.966	0.40601	45.966	45.789	46.195	0					13	7	2	0	0	0	0.34746	1	16133	16133		24.991	0	1	2310600	+		3925	21537	2580	2620	3841	3841					0.10095545936962935
ASMKLREFPYR	11	Unmodified	_ASMKLREFPYR_					0	0	0			REV__ENSG00000168807|ENST00000336278|SNTB2	REV__ENSG00000168807|ENST00000336278|SNTB2	MSMS	A375_MHC_IP_R2	2	466.6163024902344	3	466.583456	1396.72854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.275	1	36.038	35.538	36.538	0.76338								0	0	0	0.16275	1	12782	12782		4.4062	1.5629	1		+		3926	20888	2581	2621	3842	3842					0.04604481882438449
ASNDLLRSL	9	Unmodified	_ASNDLLRSL_					0	0	0			REV__nc|ENSG00000293379|A0ZSE6|TMEM30CP	REV__nc|ENSG00000293379|A0ZSE6|TMEM30CP	MSMS	A375_MHC_IP_R2	2	494.6334533691406	2	494.774731	987.534909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.045	1	36.808	36.308	37.308	0.76338								0	0	0	0.14169	1	13106	13106		29.082	1.4528	1		+		3927	27565	2582	2622	3843	3843					0.04064268437866758
ASNFRSNFGY	10	Unmodified	_ASNFRSNFGY_					0	0	0		ENST00000556321.1_1_14:58714534-58724570:+|nuORF;ENST00000555931.5_1_14:58714534-58727692:+|nuORF;ENST00000553665.5_1_14:58711638-58724717:+|nuORF;ENST00000554812.5_1_14:58714534-58734239:+|nuORF;ENST00000555743.1_1_14:58711638-58734239:+|nuORF;nc|ENSG00000100567|P25788-2|PSMA3;ENSG00000100567|ENST00000216455|PSMA3	ENST00000556321.1_1_14:58714534-58724570:+|nuORF	ENST00000556321.1_1_14:58714534-58724570:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	582.1669311523438	2	581.767437	1161.52032	-0.14252	-8.2915E-05	-1.0224	-0.00059478	-1.1649	-0.0006777	582.268207908199	54.597	0.5081	54.597	54.314	54.822	0					15	9	2	0	0	0	0.54492	1	19495	19495		24.991	0.97039	1	2647500			3928	2193	2583	2623	3844	3844					-0.05397803710275184
ASNFRSNFGY	10	Unmodified	_ASNFRSNFGY_					0	0	0		ENST00000556321.1_1_14:58714534-58724570:+|nuORF;ENST00000555931.5_1_14:58714534-58727692:+|nuORF;ENST00000553665.5_1_14:58711638-58724717:+|nuORF;ENST00000554812.5_1_14:58714534-58734239:+|nuORF;ENST00000555743.1_1_14:58711638-58734239:+|nuORF;nc|ENSG00000100567|P25788-2|PSMA3;ENSG00000100567|ENST00000216455|PSMA3	ENST00000556321.1_1_14:58714534-58724570:+|nuORF	ENST00000556321.1_1_14:58714534-58724570:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	581.767437	1161.52032	-0.14252	-8.2915E-05	-1.0224	-0.00059478	-1.1649	-0.0006777	582.268207908199	54.597	0.5081	54.597	54.314	54.822	0	-0.018996	0.00039068	NaN	24.991	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2647500			3929	2193	2583	2623							-0.05397803710275184
ASNFRSNFGY	10	Unmodified	_ASNFRSNFGY_					0	0	0		ENST00000556321.1_1_14:58714534-58724570:+|nuORF;ENST00000555931.5_1_14:58714534-58727692:+|nuORF;ENST00000553665.5_1_14:58711638-58724717:+|nuORF;ENST00000554812.5_1_14:58714534-58734239:+|nuORF;ENST00000555743.1_1_14:58711638-58734239:+|nuORF;nc|ENSG00000100567|P25788-2|PSMA3;ENSG00000100567|ENST00000216455|PSMA3	ENST00000556321.1_1_14:58714534-58724570:+|nuORF	ENST00000556321.1_1_14:58714534-58724570:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	581.767437	1161.52032	-0.75949	-0.00044185	-1.5193	-0.00088388	-2.2788	-0.0013257	581.7666298875023	53.884	1.0225	54.635	54.046	55.068	0.75105	0.018996	-0.00018752	NaN	24.991	22	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3026700			3930	2193	2583	2623							-0.05397803710275184
ASNKYLVEF	9	Unmodified	_ASNKYLVEF_					0	0	0		ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	MULTI-SECPEP	A375_MHC_IP_R2	2	536.17919921875	2	535.779482	1069.54441	-0.7518	-0.0004028	-0.16317	-8.7425E-05	-0.91497	-0.00049022	535.7794230036573	69.397	0.40452	70.131	69.879	70.284	0.73421					16	7	3	0	0	0	0.14606	1	26279	26279		47.594	7.6447	1	1532300			3931	4266	2584	2624	3845	3845					0.012420367233517027
ASNLKINIF	9	Unmodified	_ASNLKINIF_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MULTI-SECPEP	A375_MHC_IP_R1	1	510.697509765625	2	510.297842	1018.58113	-0.45133	-0.00023031	-0.32003	-0.00016331	-0.77136	-0.00039362	510.29762651717425	55.125	0.86544	55.125	54.924	55.79	0					26	16	3	0	0	0	0.5212	1	19706	19706		26.268	4.678	1	2848600	+		3932	18617	2585	2625	3846	3846					0.07258333339950696
ASPADYTKGF	10	Unmodified	_ASPADYTKGF_					0	0	0			REV__ENSG00000250254|ENST00000504686|PTTG2	REV__ENSG00000250254|ENST00000504686|PTTG2	MULTI-MSMS	A375_MHC_IP_R1	1	528.6907958984375	2	528.753464	1055.49238	-0.46035	-0.00024341	-0.10806	-5.7135E-05	-0.5684	-0.00030054	528.7536267714164	63.095	0.41102	63.095	62.863	63.274	0					13	7	2	0	0	0	0.69306	1	22755	22755		13.906	0	1	1704100	+		3933	22840	2586	2626	3847	3847					-0.03315126690404213
ASPCCFCCCT	10	Unmodified	_ASPCCFCCCT_					0	0	0			REV__ENSG00000114698|ENST00000354952|PLSCR4	REV__ENSG00000114698|ENST00000354952|PLSCR4	MSMS	A375_MHC_IP_R1	1	519.1561889648438	2	519.154519	1036.29449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.536	1	42.536	42.036	43.036	0								0	0	0	0.15531	1	14743	14743		3.5965	1.5367	1		+		3934	17838	2587	2627	3848	3848					-0.222209948037289
ASPCCFCCCT	10	Unmodified	_ASPCCFCCCT_					0	0	0			REV__ENSG00000114698|ENST00000354952|PLSCR4	REV__ENSG00000114698|ENST00000354952|PLSCR4	MSMS	A375_MHC_IP_R1	1	519.1583862304688	2	519.154519	1036.29449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.481	1	70.481	69.981	70.981	0								0	0	0	0.15531	1	25592	25592		3.5965	1.9439	1		+		3935	17838	2587	2627	3849	3849					-0.222209948037289
ASPCCGCCCGD	11	Unmodified	_ASPCCGCCCGD_					0	0	0		nc|ENSG00000077238|P24394-3|IL4R;ENSG00000077238|ENST00000395762|IL4R	nc|ENSG00000077238|P24394-3|IL4R	nc|ENSG00000077238|P24394-3|IL4R	MSMS	A375_MHC_IP_R2	2	509.6529846191406	2	509.631408	1017.24826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.449	1	42.223	41.723	42.723	0.77451								0	0	0	0.16334	1	15383	15383		1.3295	1.3295	1				3936	1650	2588	2628	3850	3850					-0.2596705970580615
ASPEPELGEE	10	Unmodified	_ASPEPELGEE_					0	0	0			REV__ENSG00000158792|ENST00000289805|SPATA2L	REV__ENSG00000158792|ENST00000289805|SPATA2L	MSMS	A375_MHC_IP_R1	1	529.1771850585938	2	529.237844	1056.46113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.655	1	52.655	52.155	53.155	0								0	0	0	0.15207	1	18738	18738		13.906	1.3745	1		+		3937	20090	2589	2629	3851	3851					-0.06483744515116996
ASPPSAGLSSF	11	Unmodified	_ASPPSAGLSSF_					0	0	0		ENST00000578361.5_1_17:79969964-79975195:+|nuORF	ENST00000578361.5_1_17:79969964-79975195:+|nuORF	ENST00000578361.5_1_17:79969964-79975195:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	511.1529846191406	2	510.753464	1019.49238	-0.36684	-0.00018736	-3.0245	-0.0015448	-3.3913	-0.0017321	510.75331051538024	43.534	1.0699	43.534	43.095	44.165	0					82	20	7	0	0	0	0.18122	1	15074	15074		56.177	3.9087	1	68601000			3938	13653	2590	2630	3852	3852					-0.016591266903674295
ASPRRVRY	8	Unmodified	_ASPRRVRY_					0	0	0		BUD13|p.H220Y|1|0.61|ENSG00000137656|chr11:116762931-116762931|G/A|missense_variant	BUD13|p.H220Y|1|0.61|ENSG00000137656|chr11:116762931-116762931|G/A|missense_variant	BUD13|p.H220Y|1|0.61|ENSG00000137656|chr11:116762931-116762931|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	502.9765930175781	2	502.79105	1003.56755	-0.14419	-7.2497E-05	-1.7946	-0.00090229	-1.9387	-0.00097478	502.79033475568264	21.348	0.25468	21.348	21.148	21.403	0					7	4	2	0	0	0	0.972	1	5532	5532		0.69038	0.16561	1	792140			3939	261	2591	2631	3853	3853					0.06590520351369378
ASPRVGLDTW	10	Unmodified	_ASPRVGLDTW_					0	0	0			REV__ENST00000539693.1_1_19:19312736-19313791:-|nuORF	REV__ENST00000539693.1_1_19:19312736-19313791:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	551.14794921875	2	551.288005	1100.56146	-1.312	-0.00072329	0.23363	0.0001288	-1.0784	-0.00059449	551.2880324059685	52.885	0.60951	53.637	53.385	53.995	0.75105					30	11	4	0	0	0	0.74754	1	19924	19924		17.113	0	1	7968500	+		3940	25947	2592	2632	3854	3854					0.015199573291738488
ASQFWGCDV	9	Unmodified	_ASQFWGCDV_					0	0	0			REV__ENST00000313386.8_1_5:177575040-177575496:+|nuORF	REV__ENST00000313386.8_1_5:177575040-177575496:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	507.64764404296875	2	506.713285	1011.41202	-0.58986	-0.00029889	1.4628	0.00074124	0.87297	0.00044235	506.71376331472123	86.3	0.65761	86.3	85.971	86.629	0					27	12	3	0	0	0	0.60101	1	31673	31673		14.838	5.4908	1	5329700	+		3941	23520	2593	2633	3855	3855					-0.09323311285072577
ASQPENTDVP	10	Unmodified	_ASQPENTDVP_					0	0	0			REV__ENST00000391748.5_1_19:54778385-54778490:-|nuORF	REV__ENST00000391748.5_1_19:54778385-54778490:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	529.6417846679688	2	529.24346	1056.47237	-0.60927	-0.00032245	-0.81932	-0.00043362	-1.4286	-0.00075607	529.243563736355	39.904	0.76107	40.679	40.422	41.183	0.77451					24	14	3	0	0	0	0.77204	1	14761	14761		27.629	3.6082	1	2608800	+		3942	24263	2594	2634	3856	3856					-0.05360922420982206
ASQQKPIL	8	Unmodified	_ASQQKPIL_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD;FOCAD|p.K1247Gfs*36|1|0.38|ENSG00000188352|chr9:20948333-20948346|AAAAGCTGAAGACT/-|frameshift_variant;FOCAD|p.M1118Ifs*13|1|0.02|ENSG00000188352|chr9:20933048-20933049|-/T|frameshift_variant	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MULTI-SECPEP	A375_MHC_IP_R1	1	442.1394958496094	2	442.763635	883.512717	-0.26049	-0.00011533	-1.5949	-0.00070615	-1.8554	-0.00082149	442.7635180562876	36.391	0.30482	36.391	36.236	36.541	0					8	5	2	0	0	0	0.90775	1	12147	12147		10.074	2.7847	1	1123100			3943	8904	2595	2635	3857	3857					0.06630088760084618
ASRAPEMPET	10	Unmodified	_ASRAPEMPET_					0	0	0			REV__ENSG00000172782|ENST00000612771|FADS6	REV__ENSG00000172782|ENST00000612771|FADS6	MULTI-MSMS	A375_MHC_IP_R1	1	363.9065246582031	3	363.506213	1087.49681	0.29707	0.00010799	1.7302	0.00062895	2.0273	0.00073694	363.50735066276906	51.892	1.4735	51.892	51.575	53.048	0					46	28	3	0	0	0	0.64579	1	18449	18449		11.631	0.73241	1	2161000	+		3944	21170	2596	2636	3858	3858					-0.04343985539117057
ASRKFHGNLY	10	Unmodified	_ASRKFHGNLY_					0	0	0		ENSG00000174448|ENST00000307844|STARD6	ENSG00000174448|ENST00000307844|STARD6	ENSG00000174448|ENST00000307844|STARD6	MULTI-SECPEP	A375_MHC_IP_R1	1	596.1927490234375	2	596.814722	1191.61489	-0.29514	-0.00017614	-0.8484	-0.00050634	-1.1435	-0.00068248	596.8142064069951	62.737	0.46016	62.737	62.454	62.914	0					12	8	2	0	0	0	0.92199	1	22604	22604		17.113	17.113	1	1104700			3945	7881	2597	2637	3859	3859					0.026747548317189285
ASRPPVTL	8	Unmodified	_ASRPPVTL_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000548190.1_1_12:53849722-53854210:+|nuORF;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2	ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-7|PCBP2	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	A375_MHC_IP_R1	1	421.15057373046875	2	420.750527	839.486502	0.43574	0.00018334	-0.28264	-0.00011892	0.1531	6.4418E-05	420.7503793760312	38.857	1.2179	38.857	38.526	39.744	0					60	23	5	0	0	0	0.16884	2	13164	13164;13432		72.968	19.135	1	251760000			3946	7414;9115	2598	2638	3860;3861	3860					0.06033819588606093
ASRPPVTL	8	Unmodified	_ASRPPVTL_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000548190.1_1_12:53849722-53854210:+|nuORF;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2	ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-7|PCBP2	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	A375_MHC_IP_R2	2	421.15032958984375	2	420.750527	839.486502	-0.3176	-0.00013363	0.14925	6.2799E-05	-0.16835	-7.0831E-05	420.75056629316543	37.99	1.2256	38.764	38.432	39.658	0.77451					65	23	5	0	0	0	0.57987	1	14143	14143		45.7	9.5726	1	191120000			3947	7414;9115	2598	2638	3862	3862					0.06033819588606093
ASRQRFRQF	9	Unmodified	_ASRQRFRQF_					0	0	0		ENST00000304926.7_1_16:3440119-3447566:-|nuORF;nc|ENSG00000121903|P17040-4|ZSCAN20;ENSG00000140987|ENST00000396852|ZSCAN32;nc|ENSG00000121903|P17040-3|ZSCAN20;ENSG00000121903|ENST00000684572|ZSCAN20	ENST00000304926.7_1_16:3440119-3447566:-|nuORF	ENST00000304926.7_1_16:3440119-3447566:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	399.61859130859375	3	399.219617	1194.63702	-0.4196	-0.00016751	-1.7021	-0.00067952	-2.1217	-0.00084703	399.21870679930976	59.817	0.7077	60.564	60.198	60.906	0.74714					16	13	2	0	0	0	0.65748	1	22685	22685		10.8	5.9025	1	2520700			3948	3747	2599	2639	3863	3863					0.047489793001204816
ASRRLWKMWHY	11	Unmodified	_ASRRLWKMWHY_					0	0	0			REV__nc|ENSG00000163125|Q5VT52-5|RPRD2	REV__nc|ENSG00000163125|Q5VT52-5|RPRD2	MSMS	A375_MHC_IP_R2	2	511.9337463378906	3	511.934712	1532.78231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.068	1	32.805	32.305	33.305	0.73692								0	0	0	0.16336	1	11377	11377		1.2148	0	1		+		3949	20340	2600	2640	3864	3864					0.03722699104832827
ASRSEPLVSFS	11	Unmodified	_ASRSEPLVSFS_					0	0	0		ENSG00000124479|ENST00000642620|NDP	ENSG00000124479|ENST00000642620|NDP	ENSG00000124479|ENST00000642620|NDP	MSMS	A375_MHC_IP_R2	2	393.927490234375	3	393.87166	1178.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.442	1	21.052	20.552	21.552	0.61029								0	0	0	0.16108	1	6363	6363		7.0371	0.41363	1				3950	3904	2601	2641	3865	3865					0.010999052924944408
ASRSQTLLI	9	Unmodified	_ASRSQTLLI_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	A375_MHC_IP_R2	2	495.1337890625	2	494.792924	987.571294	-0.75627	-0.0003742	-0.5016	-0.00024819	-1.2579	-0.00062238	494.79266560795674	57.822	0.30221	58.571	58.427	58.729	0.74894					7	5	2	0	0	0	0.71341	1	21907	21907		13.042	6.3193	1	540040	+		3951	18059	2602	2642	3866	3866					0.07701145334590365
ASRVLAAL	8	Unmodified	_ASRVLAAL_					0	0	0		ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	MULTI-MSMS	A375_MHC_IP_R1	1	401.2713623046875	2	400.75307	799.491587	-0.27094	-0.00010858	0.13276	5.3204E-05	-0.13818	-5.5378E-05	400.7530061594684	55.438	0.61279	55.438	55.228	55.841	0					15	11	2	0	0	0	0.73622	1	19792	19792		24.021	3.5669	1	2581500			3952	9819	2603	2643	3867	3867					0.08382123451235657
ASRVLAAL	8	Unmodified	_ASRVLAAL_					0	0	0		ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	MULTI-SECPEP	A375_MHC_IP_R2	2	401.1528625488281	2	400.75307	799.491587	-0.24905	-9.9808E-05	-0.13753	-5.5115E-05	-0.38658	-0.00015492	400.7529925419879	54.479	0.55673	55.23	54.967	55.523	0.75075					22	10	3	0	0	0	0.88903	1	20554	20554		24.021	0	1	2618100			3953	9819	2603	2643	3868	3868					0.08382123451235657
ASSAPFLYL	9	Unmodified	_ASSAPFLYL_					0	0	0		nc|ENSG00000152430|Q8N9W6-5|BOLL;ENSG00000152430|ENST00000392296|BOLL;nc|ENSG00000152430|Q8N9W6-4|BOLL;nc|ENSG00000152430|Q8N9W6-3|BOLL;nc|ENSG00000152430|Q8N9W6-2|BOLL	nc|ENSG00000152430|Q8N9W6-5|BOLL	nc|ENSG00000152430|Q8N9W6-5|BOLL	MSMS	A375_MHC_IP_R1	1	484.6552734375	2	484.758018	967.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.516	1	21.516	21.016	22.016	0								0	0	0	0.15486	1	5668	5668		8.5933	0	1				3954	5965	2604	2644	3869	3869					0.01643266665939791
ASSDVNYLIEE	11	Unmodified	_ASSDVNYLIEE_					0	0	0		ENSG00000170209|ENST00000303941|ANKK1	ENSG00000170209|ENST00000303941|ANKK1	ENSG00000170209|ENST00000303941|ANKK1	MULTI-SECPEP	A375_MHC_IP_R2	2	619.6805419921875	2	620.290608	1238.56666	-0.62485	-0.00038759	0.98978	0.00061395	0.36493	0.00022636	620.291058884572	42.968	0.45417	43.741	43.472	43.926	0.7724					17	8	3	0	0	0	0.92455	1	16004	16004		11.495	0	1	2956800			3955	7481	2605	2645	3870	3870					-0.0430782838950563
ASSDWSCLS	9	Unmodified	_ASSDWSCLS_					0	0	0		nc|ENSG00000141568|Q01167-2|FOXK2	nc|ENSG00000141568|Q01167-2|FOXK2	nc|ENSG00000141568|Q01167-2|FOXK2	MSMS	A375_MHC_IP_R2	2	478.1605529785156	2	478.194925	954.375297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.815	1	57.565	57.065	58.065	0.75015								0	0	0	0.15486	1	21477	21477		12.532	0	1				3956	14646	2606	2646	3871	3871					-0.10371607901652169
ASSFWETASF	10	Unmodified	_ASSFWETASF_					0	0	0		ENST00000340524.9_1_3:191034083-191048257:-|nuORF	ENST00000340524.9_1_3:191034083-191048257:-|nuORF	ENST00000340524.9_1_3:191034083-191048257:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	566.6937255859375	2	566.750921	1131.48729	-0.80221	-0.00045465	-0.077235	-4.3773E-05	-0.87945	-0.00049843	567.2522469178207	59.2	0.35583	59.947	59.742	60.098	0.74714					10	6	2	0	0	0	0.70496	1	22340	22340		10.074	0.52995	1	765590			3957	10857	2607	2647	3872	3872					-0.07319430553002348
ASSGHYIAY	9	Unmodified	_ASSGHYIAY_					0	0	0		ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33;nc|ENSG00000077254|Q8TEY7-3|USP33	ENSG00000077254|ENST00000370794|USP33	ENSG00000077254|ENST00000370794|USP33	MULTI-MSMS	A375_MHC_IP_R1	1	485.1270751953125	2	484.727249	967.439946	-0.3878	-0.00018798	-0.20842	-0.00010103	-0.59622	-0.00028901	484.72715911421363	33.13	0.45544	33.13	32.887	33.342	0					16	8	3	0	0	0	0.050162	1	10803	10803		64.236	26.262	1	3147600			3958	1651	2608	2648	3873	3873					-0.04507665033338526
ASSGHYIAY	9	Unmodified	_ASSGHYIAY_					0	0	0		ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33;nc|ENSG00000077254|Q8TEY7-3|USP33	ENSG00000077254|ENST00000370794|USP33	ENSG00000077254|ENST00000370794|USP33	MULTI-MSMS	A375_MHC_IP_R2	2	485.1268310546875	2	484.727249	967.439946	-0.63142	-0.00030607	0.15937	7.7251E-05	-0.47205	-0.00022882	484.72722069401357	32.388	0.45735	33.125	32.96	33.417	0.73692					18	8	3	0	0	0	0.077132	1	11542	11542		54.774	16.8	1	3723900			3959	1651	2608	2648	3874	3874					-0.04507665033338526
ASSHWRVFSR	10	Unmodified	_ASSHWRVFSR_					0	0	0		ENST00000415912.6_1_1:21546261-21546360:-|nuORF	ENST00000415912.6_1_1:21546261-21546360:-|nuORF	ENST00000415912.6_1_1:21546261-21546360:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	617.2169189453125	2	616.817796	1231.62104	-0.30824	-0.00019013	-0.40202	-0.00024797	-0.71025	-0.0004381	616.8172443239857	68.766	0.70889	68.766	68.412	69.121	0					29	13	3	0	0	0	0.6502	1	24911	24911		17.113	1.8644	1	3004700			3960	11684	2609	2649	3875	3875					0.01449273063212786
ASSLLQLDH	9	Unmodified	_ASSLLQLDH_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ENST00000407916.2_1_7:55002927-55003332:+|nuORF	nc|ENSG00000100852|Q13017-2|ARHGAP5;ENST00000407916.2_1_7:55002927-55003332:+|nuORF	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-SECPEP	A375_MHC_IP_R2	2	492.1958312988281	2	492.261456	982.50836	-0.64497	-0.00031749	0.96498	0.00047502	0.32001	0.00015753	492.26177907985925	50.622	0.50667	51.376	51.108	51.615	0.75406					10	9	2	0	0	0	0.74412	1	19118	19118		6.2058	4.146	1	960740			3961	2226;11612	2610	2650	3876	3876					0.016405795465175288
ASSPFFREA	9	Unmodified	_ASSPFFREA_					0	0	0		ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	MULTI-MSMS	A375_MHC_IP_R1	1	506.64801025390625	2	506.248349	1010.48214	-0.070213	-3.5545E-05	1.7273	0.00087443	1.6571	0.00083888	506.2497964289807	49.657	1.0702	49.657	49.134	50.204	0					26	20	2	0	0	0	0.37338	1	17577	17577		26.021	6.7637	1	2384800			3962	7867	2611	2651	3877	3877					-0.022676896249549827
ASSPTPPHGY	10	Unmodified	_ASSPTPPHGY_					0	0	0		nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-8|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3;ENSG00000160584|ENST00000445177|SIK3;ENST00000480468.1_1_11:116728475-116732017:-|nuORF;nc|ENSG00000160584|Q9Y2K2-6|SIK3	nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-6|SIK3	nc|ENSG00000160584|Q9Y2K2-6|SIK3	MULTI-SECPEP	A375_MHC_IP_R1	1	507.6958923339844	2	507.237981	1012.46141	-0.40437	-0.00020511	-1.2786	-0.00064853	-1.6829	-0.00085365	507.7382918132746	24.977	0.20087	24.977	24.852	25.053	0					5	3	2	0	0	0	0.43292	1	7215	7215		32.305	20.811	1	5153900			3963	6425;14712	2612	2652	3878	3878					-0.04432280004630229
ASSPTPPHGY	10	Unmodified	_ASSPTPPHGY_					0	0	0		nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-8|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3;ENSG00000160584|ENST00000445177|SIK3;ENST00000480468.1_1_11:116728475-116732017:-|nuORF;nc|ENSG00000160584|Q9Y2K2-6|SIK3	nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-6|SIK3	nc|ENSG00000160584|Q9Y2K2-6|SIK3	MSMS	A375_MHC_IP_R2	2	507.1981506347656	2	507.237981	1012.46141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.434	1	25.078	24.578	25.578	0.64368								0	0	0	0.14925	1	8023	8023		19.257	5.3509	1				3964	6425;14712	2612	2652	3879	3879					-0.04432280004630229
ASSPVLRQM	9	Unmodified	_ASSPVLRQM_					0	0	0		nc|ENSG00000084676|Q15788-2|NCOA1;nc|ENSG00000084676|Q15788-3|NCOA1;ENSG00000084676|ENST00000348332|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-SECPEP	A375_MHC_IP_R1	1	495.1659851074219	2	494.765852	987.51715	-0.52676	-0.00026062	0.062301	3.0824E-05	-0.46446	-0.0002298	494.7659375871387	36.349	0.56002	36.349	36.084	36.644	0					17	10	2	0	0	0	0.087712	1	12152	12152		57.722	32.323	1	4722200			3965	1800	2613	2653	3880	3880					0.022892299113550507
ASSPVLRQM	9	Unmodified	_ASSPVLRQM_					0	0	0		nc|ENSG00000084676|Q15788-2|NCOA1;nc|ENSG00000084676|Q15788-3|NCOA1;ENSG00000084676|ENST00000348332|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-SECPEP	A375_MHC_IP_R2	2	495.16552734375	2	494.765852	987.51715	-0.70044	-0.00034655	0.16926	8.3745E-05	-0.53117	-0.00026281	494.7659623014611	35.565	0.60712	36.328	35.98	36.587	0.76338					27	11	3	0	0	0	0.01128	1	12858	12858		82.529	51.893	1	8292500			3966	1800	2613	2653	3881	3881					0.022892299113550507
ASSPVLRQM	9	Oxidation (M)	_ASSPVLRQM(Oxidation (M))_		ASSPVLRQM(1)		ASSPVLRQM(62)	0	0	1		nc|ENSG00000084676|Q15788-2|NCOA1;nc|ENSG00000084676|Q15788-3|NCOA1;ENSG00000084676|ENST00000348332|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-SECPEP	A375_MHC_IP_R1	1	502.9764404296875	2	502.763309	1003.51206	-0.49453	-0.00024863	0.41859	0.00021045	-0.075936	-3.8178E-05	502.7632525492275	24.473	0.81015	24.473	24.143	24.953	0					35	15	3	0	0	0	0.036758	1	6994	6994		61.602	31.761	1	9642900			3967	1800	2613	2654	3882	3882		62			0.01044926048734851
ASSTAFRIY	9	Unmodified	_ASSTAFRIY_					0	0	0		ENST00000507606.2_1_7:135347283-135358947:+|nuORF	ENST00000507606.2_1_7:135347283-135358947:+|nuORF	ENST00000507606.2_1_7:135347283-135358947:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	508.69268798828125	2	508.263999	1014.51345	-0.2853	-0.00014501	-0.14085	-7.1587E-05	-0.42615	-0.0002166	508.2639443779738	56.373	1.4234	56.373	55.584	57.007	0					68	27	5	0	0	0	0.0098085	1	20234	20234		114.2	74.252	1	69715000			3968	12866	2614	2655	3883	3883					0.006768834091417375
ASSTAFRIY	9	Unmodified	_ASSTAFRIY_					0	0	0		ENST00000507606.2_1_7:135347283-135358947:+|nuORF	ENST00000507606.2_1_7:135347283-135358947:+|nuORF	ENST00000507606.2_1_7:135347283-135358947:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	508.6922302246094	2	508.263999	1014.51345	-0.82135	-0.00041746	0.084289	4.2841E-05	-0.73706	-0.00037462	508.2640459638346	55.491	0.86419	56.241	55.881	56.745	0.75075					41	16	3	0	0	0	0.0092511	2	20992	20972;20992		114.2	74.252	1	77655000			3969	12866	2614	2655	3884;3885	3885					0.006768834091417375
ASSVVLSPSY	10	Unmodified	_ASSVVLSPSY_					0	0	0		MED12L|p.G1994S|1|0.33|ENSG00000144893|chr3:151411452-151411452|G/A|missense_variant	MED12L|p.G1994S|1|0.33|ENSG00000144893|chr3:151411452-151411452|G/A|missense_variant	MED12L|p.G1994S|1|0.33|ENSG00000144893|chr3:151411452-151411452|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	505.6690979003906	2	505.263665	1008.51278	-0.27244	-0.00013765	0.29441	0.00014875	0.02197	1.11E-05	505.2637765176615	56.669	0.86389	56.669	56.347	57.211	0					61	16	5	0	0	0	0.24499	1	20214	20214		61.357	2.6787	1	49360000			3970	14367	2615	2656	3886	3886					0.008860439694444722
ASSWTLFVG	9	Unmodified	_ASSWTLFVG_					0	0	0			REV__ENST00000589718.5_1_12:12232564-12240182:+|nuORF	REV__ENST00000589718.5_1_12:12232564-12240182:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	484.6476745605469	2	484.247818	966.481082	-0.41948	-0.00020313	0.05979	2.8953E-05	-0.35969	-0.00017418	484.24776738190627	110.89	0.55886	111.62	111.4	111.96	0.73692					16	10	2	0	0	0	0.55818	1	41849	41849		16.942	1.0951	1	1461900	+		3971	26424	2616	2657	3887	3887					-0.0034990399385605997
ASSYIAHL	8	Unmodified	_ASSYIAHL_					0	0	0		ENSG00000118526|ENST00000367882|TCF21;ENSG00000125878|ENST00000246080|TCF15;ENSG00000178860|ENST00000325509|MSC	ENSG00000118526|ENST00000367882|TCF21	ENSG00000118526|ENST00000367882|TCF21	MULTI-MSMS	A375_MHC_IP_R1	1	431.6268310546875	2	431.226885	860.439217	-0.26699	-0.00011514	0.026678	1.1504E-05	-0.24032	-0.00010363	431.22683507037	46.636	0.60656	46.636	46.345	46.952	0					29	11	3	0	0	0	0.20258	1	16355	16355		67.035	16.18	1	9495500			3972	3551	2617	2658	3888	3888					0.003415403175949905
ASSYIAHL	8	Unmodified	_ASSYIAHL_					0	0	0		ENSG00000118526|ENST00000367882|TCF21;ENSG00000125878|ENST00000246080|TCF15;ENSG00000178860|ENST00000325509|MSC	ENSG00000118526|ENST00000367882|TCF21	ENSG00000118526|ENST00000367882|TCF21	MULTI-SECPEP	A375_MHC_IP_R2	2	431.62677001953125	2	431.226885	860.439217	-0.21971	-9.4746E-05	-0.056567	-2.4393E-05	-0.27628	-0.00011914	431.22683668651104	45.758	0.65404	46.523	46.201	46.855	0.76519					27	12	3	0	0	0	0.19086	1	17072	17072		67.035	26.587	1	11065000			3973	3551	2617	2658	3889	3889					0.003415403175949905
ASTALGNNSSL	11	Unmodified	_ASTALGNNSSL_					0	0	0		SIGLEC7|p.S261N|1|0.37|ENSG00000168995|chr19:51145876-51145876|G/A|missense_variant	SIGLEC7|p.S261N|1|0.37|ENSG00000168995|chr19:51145876-51145876|G/A|missense_variant	SIGLEC7|p.S261N|1|0.37|ENSG00000168995|chr19:51145876-51145876|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	518.660888671875	2	517.759278	1033.504	-0.86626	-0.00044851	1.8983	0.00098288	1.0321	0.00053437	518.2610207149801	30.127	1.0085	30.127	29.798	30.806	0					36	19	4	0	0	0	0.73189	1	9584	9584		7.1017	0.37856	1	8444200			3974	29159	2618	2659	3890	3890					-0.011409296670308322
ASTLTPTPR	9	Unmodified	_ASTLTPTPR_					0	0	0		MUC16|p.T8997A|1|0.25|ENSG00000181143|chr19:8949781-8949781|T/C|missense_variant	MUC16|p.T8997A|1|0.25|ENSG00000181143|chr19:8949781-8949781|T/C|missense_variant	MUC16|p.T8997A|1|0.25|ENSG00000181143|chr19:8949781-8949781|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	472.2967834472656	2	472.263999	942.513445	-0.59608	-0.00028151	0.027906	1.3179E-05	-0.56818	-0.00026833	472.264046641465	32.353	2.1297	32.353	31.973	34.103	0					123	41	6	0	0	0	0.0090323	1	10479	10479		99.799	10.845	1	628770000			3975	14421	2619	2660	3891	3891					0.039888834091470926
ASTNRPLLSI	10	Unmodified	_ASTNRPLLSI_					0	0	0		ENSG00000107863|ENST00000396432|ARHGAP21;ENST00000486374.5_1_10:24873343-24884978:-|nuORF;ENST00000577174.1_1_16:10934243-10934807:-|nuORF	ENSG00000107863|ENST00000396432|ARHGAP21	ENSG00000107863|ENST00000396432|ARHGAP21	MULTI-SECPEP	A375_MHC_IP_R2	2	536.7116088867188	2	536.31148	1070.60841	-0.85391	-0.00045796	1.8953	0.0010165	1.0414	0.0005585	536.3111103465792	70.593	0.6591	71.327	70.946	71.605	0.73421					23	12	3	0	0	0	0.64789	1	26764	26764		38.615	20.468	1	7188300			3976	2765	2620	2661	3892	3892					0.07592816880332975
ASTPVAREL	9	Unmodified	_ASTPVAREL_					0	0	0		nc|ENSG00000058600|Q9NVU0-3|POLR3E;nc|ENSG00000058600|Q9NVU0-2|POLR3E;nc|ENSG00000058600|Q9NVU0-5|POLR3E;ENST00000564061.5_1_16:22308800-22337695:+|nuORF;nc|ENSG00000058600|Q9NVU0-4|POLR3E;ENSG00000058600|ENST00000299853|POLR3E;POLR3E|p.G552S|1|0.48|ENSG00000058600|chr16:22326066-22326066|G/A|missense_variant	nc|ENSG00000058600|Q9NVU0-3|POLR3E	nc|ENSG00000058600|Q9NVU0-3|POLR3E	MULTI-MSMS	A375_MHC_IP_R1	1	472.66357421875	2	472.263999	942.513445	-0.59608	-0.00028151	0.027906	1.3179E-05	-0.56818	-0.00026833	472.264046641465	32.353	2.1297	32.353	31.973	34.103	0					123	41	6	0	0	0	0.0018976	1	10364	10364		145.13	41.776	1	628770000			3977	1294	2621	2662	3893	3893					0.03988883409135724
ASTPVAREL	9	Unmodified	_ASTPVAREL_					0	0	0		nc|ENSG00000058600|Q9NVU0-3|POLR3E;nc|ENSG00000058600|Q9NVU0-2|POLR3E;nc|ENSG00000058600|Q9NVU0-5|POLR3E;ENST00000564061.5_1_16:22308800-22337695:+|nuORF;nc|ENSG00000058600|Q9NVU0-4|POLR3E;ENSG00000058600|ENST00000299853|POLR3E;POLR3E|p.G552S|1|0.48|ENSG00000058600|chr16:22326066-22326066|G/A|missense_variant	nc|ENSG00000058600|Q9NVU0-3|POLR3E	nc|ENSG00000058600|Q9NVU0-3|POLR3E	MULTI-MSMS	A375_MHC_IP_R2	2	472.6636657714844	2	472.263999	942.513445	-0.59477	-0.00028089	-0.029855	-1.41E-05	-0.62463	-0.00029499	472.2640534348299	31.588	1.9335	32.325	31.993	33.926	0.73692					117	37	5	0	0	0	0.0018976	3	11115	11115;11297;11746		145.13	55.729	1	749670000			3978	1294	2621	2662	3894;3895;3896	3894					0.03988883409135724
ASTTFDNFLR	10	Unmodified	_ASTTFDNFLR_					0	0	0		nc|ENSG00000134028|O15204-2|ADAMDEC1;ENSG00000134028|ENST00000256412|ADAMDEC1	nc|ENSG00000134028|O15204-2|ADAMDEC1	nc|ENSG00000134028|O15204-2|ADAMDEC1	MSMS	A375_MHC_IP_R1	1	391.1333923339844	3	391.196256	1170.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.9	1	105.9	105.4	106.4	0								0	0	0	0.15557	1	38874	38874		1.3296	0	1				3979	4544	2622	2663	3897	3897					-0.011523638790094992
ASTYAIRVSNY	11	Unmodified	_ASTYAIRVSNY_					0	0	0		nc|ENSG00000086991|Q9NPH5-5|NOX4;nc|ENSG00000086991|Q9NPH5-9|NOX4;chr11:89490553-89492121|256|10.86|0.47|4.52|-|ENST00000532825|NOX4,NOX4;nc|ENSG00000086991|Q9NPH5-6|NOX4;nc|ENSG00000086991|Q9NPH5-8|NOX4;chr11:89492219-89497997|199|14.56|0.13|6.76|-|ENST00000527956|NOX4,NOX4;ENSG00000086991|ENST00000263317|NOX4;nc|ENSG00000086991|Q9NPH5-2|NOX4	nc|ENSG00000086991|Q9NPH5-5|NOX4	nc|ENSG00000086991|Q9NPH5-5|NOX4	MULTI-MSMS	A375_MHC_IP_R2	2	415.9112548828125	3	415.547177	1243.6197	-0.028864	-1.1995E-05	-1.4653	-0.00060889	-1.4941	-0.00062088	415.546721119307	30.486	0.50701	31.205	30.86	31.367	0.71857					13	9	2	0	0	0	0.73016	1	10660	10660		4.4062	0.56024	1	1500300			3980	405	2623	2664	3898	3898					0.007635941838316285
ASTYVWVQ	8	Unmodified	_ASTYVWVQ_					0	0	0		ENSG00000204178|ENST00000374343|MACO1;nc|ENSG00000204178|Q8N5G2-3|MACO1	ENSG00000204178|ENST00000374343|MACO1	ENSG00000204178|ENST00000374343|MACO1	MULTI-MSMS	A375_MHC_IP_R1	1	477.6393127441406	2	477.239993	952.465432	-0.43809	-0.00020908	0.20465	9.7665E-05	-0.23345	-0.00011141	477.24001325429236	63.3	0.56232	63.3	62.966	63.529	0					15	10	2	0	0	0	0.76248	1	22874	22874		16.942	1.0951	1	2259200			3981	9413	2624	2665	3899	3899					-0.01270190510899738
ASTYVWVQ	8	Unmodified	_ASTYVWVQ_					0	0	0		ENSG00000204178|ENST00000374343|MACO1;nc|ENSG00000204178|Q8N5G2-3|MACO1	ENSG00000204178|ENST00000374343|MACO1	ENSG00000204178|ENST00000374343|MACO1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	477.239993	952.465432	-0.43809	-0.00020908	0.20465	9.7665E-05	-0.23345	-0.00011141	477.24001325429236	63.3	0.56232	63.3	62.966	63.529	0	0.058111	0.00014708	NaN	16.942	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2259200			3982	9413	2624	2665							-0.01270190510899738
ASVEWCSIP	9	Unmodified	_ASVEWCSIP_					0	0	0			REV__ENST00000317204.10_1_11:1297899-1298181:-|nuORF	REV__ENST00000317204.10_1_11:1297899-1298181:-|nuORF	MSMS	A375_MHC_IP_R1	1	496.16455078125	2	496.23131	990.448068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.239	1	77.239	76.739	77.739	0								0	0	0	0.15283	1	28173	28173		16.942	0	1		+		3983	23542	2625	2666	3900	3900					-0.04753854108230371
ASVHALPE	8	Unmodified	_ASVHALPE_					0	0	0		ENSG00000148408|ENST00000371372|CACNA1B	ENSG00000148408|ENST00000371372|CACNA1B	ENSG00000148408|ENST00000371372|CACNA1B	MULTI-SECPEP	A375_MHC_IP_R1	1	412.6189880371094	2	412.21906	822.423567	0.27993	0.00011539	-0.22505	-9.2772E-05	0.054881	2.2623E-05	412.21890964388035	40.484	0.50828	40.484	40.254	40.762	0					20	9	3	0	0	0	0.73563	1	13905	13905		36.044	10.645	1	5926200			3984	5740	2626	2667	3901	3901					0.005252538005720453
ASVIFPAWY	9	Unmodified	_ASVIFPAWY_					0	0	0		ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	MULTI-SECPEP	A375_MHC_IP_R1	1	527.6761474609375	2	527.273835	1052.53312	-0.55315	-0.00029166	2.0058	0.0010576	1.4527	0.00076596	527.2748542868497	46.52	0.65553	46.52	46.094	46.749	0					21	12	2	0	0	0	0.3243	1	16271	16271		36.044	36.044	1	19083000			3985	7747	2627	2668	3902	3902					0.008952594198945008
ASVLLAGARNW	11	Unmodified	_ASVLLAGARNW_					0	0	0		ENST00000468380.1_1_3:183165467-183165554:+|nuORF;ENST00000471496.5_1_3:183165407-183170079:+|nuORF	ENST00000468380.1_1_3:183165467-183165554:+|nuORF	ENST00000468380.1_1_3:183165467-183165554:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	579.7245483398438	2	579.324922	1156.63529	-0.27288	-0.00015809	0.49157	0.00028478	0.21869	0.00012669	579.3252687062779	76.546	0.60932	76.546	76.269	76.878	0					22	11	3	0	0	0	0.1966	1	27890	27890		63.227	45.081	1	3849800			3986	12306	2628	2669	3903	3903					0.06323925491506088
ASVLLAGARNW	11	Unmodified	_ASVLLAGARNW_					0	0	0		ENST00000468380.1_1_3:183165467-183165554:+|nuORF;ENST00000471496.5_1_3:183165407-183170079:+|nuORF	ENST00000468380.1_1_3:183165467-183165554:+|nuORF	ENST00000468380.1_1_3:183165467-183165554:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	579.7246704101562	2	579.324922	1156.63529	-0.25692	-0.00014884	0.099944	5.79E-05	-0.15698	-9.0942E-05	579.3249812810917	75.67	0.66388	76.411	76.078	76.742	0.74052					24	12	3	0	0	0	0.6385	1	28713	28713		43.982	28.733	1	4704300			3987	12306	2628	2669	3904	3904					0.06323925491506088
ASVPDPHLL	9	Unmodified	_ASVPDPHLL_					0	0	0		nc|ENSG00000198089|A8K8P3-4|SFI1;nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;nc|ENSG00000198089|A8K8P3-5|SFI1;ENST00000382162.7_1_22:32002284-32014401:+|nuORF;ENST00000474741.5_1_22:32009833-32014520:+|nuORF;ENST00000464333.5_1_22:32012607-32014401:+|nuORF	nc|ENSG00000198089|A8K8P3-4|SFI1	nc|ENSG00000198089|A8K8P3-4|SFI1	MULTI-SECPEP	A375_MHC_IP_R1	1	475.16082763671875	2	474.761092	947.507631	-0.49209	-0.00023362	-0.086538	-4.1085E-05	-0.57863	-0.00027471	474.76122665471166	63.913	0.55906	63.913	63.632	64.191	0					19	10	2	0	0	0	0.3607	1	23113	23113		34.102	10.082	1	2764200			3988	9228	2629	2670	3905	3905					0.031777848974684275
ASVPTLQGGVS	11	Unmodified	_ASVPTLQGGVS_					0	0	0			REV__ENSG00000196663|ENST00000359520|TECPR2	REV__ENSG00000196663|ENST00000359520|TECPR2	MSMS	A375_MHC_IP_R2	2	508.1841735839844	2	508.274564	1014.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.061	1	99.82	99.32	100.32	0.75977								0	0	0	0.15694	1	37578	37578		16.149	0.30192	1		+		3989	22219	2630	2671	3906	3906					0.027888487180121047
ASVPTSEEPA	10	Unmodified	_ASVPTSEEPA_					0	0	0		nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|O94854-4|MACF1	nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|O94854|MACF1	MULTI-MSMS	A375_MHC_IP_R2	2	494.1738586425781	2	494.235104	986.455655	-0.91804	-0.00045373	1.2286	0.00060722	0.31057	0.00015349	494.2356678856615	25.089	0.35662	25.733	25.568	25.924	0.64368					9	6	2	0	0	0	0.66712	1	8362	8362		15.847	1.0089	1	2709900			3990	14586	2631	2672	3907	3907					-0.03811423306956385
ASVPTSEEPA	10	Unmodified	_ASVPTSEEPA_					0	0	0		nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|O94854-4|MACF1	nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|O94854|MACF1	MULTI-MATCH	A375_MHC_IP_R1	1		2	494.235104	986.455655	-0.48781	-0.00024109	1.1967	0.00059144	0.70887	0.00035035	494.23566991676	25.638	0.35538	25.638	25.511	25.866	0	-0.047096	-1.5144E-05	NaN	15.847	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2627500			3991	14586	2631	2672							-0.03811423306956385
ASVRTYVVP	9	Unmodified	_ASVRTYVVP_					0	0	0			REV__ENSG00000162438|ENST00000375949|CTRC	REV__ENSG00000162438|ENST00000375949|CTRC	MSMS	A375_MHC_IP_R1	1	496.3160705566406	2	496.282192	990.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.254	1	88.254	87.754	88.754	0								0	0	0	0.14812	1	32394	32394		24.674	1.5255	1		+		3992	20256	2632	2673	3908	3908					0.05417760305851971
ASVSPTVPEF	10	Unmodified	_ASVSPTVPEF_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7-2|MRTFB;nc|ENSG00000186260|Q9ULH7-3|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	A375_MHC_IP_R1	1	517.6632690429688	2	517.263665	1032.51278	-0.4084	-0.00021125	0.0545	2.8191E-05	-0.3539	-0.00018306	517.2636114789412	105.57	1.5287	105.57	105.2	106.73	0					61	29	3	0	0	0	0.6806	1	38909	38909		14.838	0.93222	1	14387000			3993	8736	2633	2674	3909	3909					-0.00217956030564892
ASVYSRLPFF	10	Unmodified	_ASVYSRLPFF_					0	0	0			REV__ANK3|p.S1776F|2|0.49|ENSG00000151150|chr10:60075554-60075554|G/A|missense_variant	REV__ANK3|p.S1776F|2|0.49|ENSG00000151150|chr10:60075554-60075554|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	396.24853515625	3	396.213358	1185.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.1	1	21.719	21.219	22.219	0.61932								0	0	0	0.15225	1	6618	6618		13.519	0	1		+		3994	15405	2634	2675	3910	3910					0.032860048856719004
ASWGPCCPS	9	Unmodified	_ASWGPCCPS_					0	0	0			REV__ENST00000455097.5_1_21:38739883-38787831:+|nuORF	REV__ENST00000455097.5_1_21:38739883-38787831:+|nuORF	MSMS	A375_MHC_IP_R1	1	454.1559143066406	2	454.175481	906.336409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.969	1	66.969	66.469	67.469	0								0	0	0	0.15486	1	24264	24264		4.3292	1.44	1		+		3995	24925	2635	2676	3911	3911					-0.12050611737015515
ASWIAQVFLQ	10	Unmodified	_ASWIAQVFLQ_					0	0	0		ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000409825.5_1_2:47184044-47301059:+|nuORF	ENSG00000068724|ENST00000319190|TTC7A	ENSG00000068724|ENST00000319190|TTC7A	MULTI-SECPEP	A375_MHC_IP_R2	2	388.6130676269531	3	388.213358	1161.61824	-0.34726	-0.00013481	-0.71306	-0.00027682	-1.0603	-0.00041163	388.2130398813647	34.775	0.45451	35.538	35.324	35.778	0.76338					13	8	2	0	0	0	0.93999	1	12609	12609		7.4771	7.4771	1	2838100			3996	1463	2636	2677	3912	3912					0.04390004885704002
ASYAWRESC	9	Unmodified	_ASYAWRESC_					0	0	0		ENST00000221554.12_1_19:13858648-13862607:+|nuORF	ENST00000221554.12_1_19:13858648-13862607:+|nuORF	ENST00000221554.12_1_19:13858648-13862607:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1996459960938	2	536.729466	1071.44438	-0.58476	-0.00031386	2.2596	0.0012128	1.6748	0.00089892	537.2328092133549	105.6	0.81197	105.6	105.25	106.06	0					25	15	2	0	0	0	0.67483	1	38756	38756		10.074	8.0142	1	2813700			3997	10108	2637	2678	3913	3913					-0.08848523882079462
ASYFIYDVT	9	Unmodified	_ASYFIYDVT_					0	0	0			REV__nc|ENSG00000174606|Q5VTE6-2|ANGEL2	REV__nc|ENSG00000174606|Q5VTE6-2|ANGEL2	MSMS	A375_MHC_IP_R1	1	539.675537109375	2	539.758215	1077.50188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.694	1	45.694	45.194	46.194	0								0	0	0	0.15069	1	16001	16001		20.454	6.5476	1		+		3998	21293	2638	2679	3914	3914					-0.03377358404873121
ASYGGSPVGH	10	Unmodified	_ASYGGSPVGH_					0	0	0		nc|ENSG00000121716|Q9UKJ0-3|PILRB	nc|ENSG00000121716|Q9UKJ0-3|PILRB	nc|ENSG00000121716|Q9UKJ0-3|PILRB	MULTI-MSMS	A375_MHC_IP_R1	1	466.18414306640625	2	466.217049	930.419545	-0.29206	-0.00013616	-0.19036	-8.8747E-05	-0.48241	-0.00022491	466.2169324335196	28.517	1.5681	28.517	27.684	29.252	0					59	30	2	0	0	0	0.43117	1	8726	8726		32.305	0.18852	1	9291000			3999	14570	2639	2680	3915	3915					-0.04844835693143068
ASYGGSPVGH	10	Unmodified	_ASYGGSPVGH_					0	0	0		nc|ENSG00000121716|Q9UKJ0-3|PILRB	nc|ENSG00000121716|Q9UKJ0-3|PILRB	nc|ENSG00000121716|Q9UKJ0-3|PILRB	MULTI-MSMS	A375_MHC_IP_R2	2	466.1843566894531	2	466.217049	930.419545	-0.70458	-0.00032849	0.066548	3.1026E-05	-0.63803	-0.00029746	466.2170601116236	27.875	1.5234	28.553	27.69	29.214	0.67857					56	29	2	0	0	0	0.43117	1	9469	9469		32.305	3.8186	1	9560900			4000	14570	2639	2680	3916	3916					-0.04844835693143068
ASYHTVSLQL	10	Unmodified	_ASYHTVSLQL_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MSMS	A375_MHC_IP_R2	2	373.4803466796875	3	373.532868	1117.57677	0.58988	0.00022034	-0.7196	-0.00026879	-0.12972	-4.8456E-05	373.53256157251593	47.154	0.40894	47.915	47.664	48.073	0.76128					13	7	2	0	0	0	0.7154	1	17657	17657		5.4027	2.0831	1	1366400			4001	14531	2640	2681	3917	3917					0.022688241263722375
ASYHTVSLQL	10	Unmodified	_ASYHTVSLQL_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MATCH	A375_MHC_IP_R1	1		3	373.532868	1117.57677	0.60081	0.00022442	-0.44833	-0.00016747	0.15248	5.6955E-05	373.53260606329576	48.096	0.55673	48.096	47.768	48.325	0	0.09065	0.00018651	NaN	5.4027	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2235900			4002	14531	2640	2681							0.022688241263722375
ASYQDRRQSW	10	Unmodified	_ASYQDRRQSW_					0	0	0		nc|ENSG00000149636|Q9H410-2|DSN1;nc|ENSG00000149636|Q9H410-4|DSN1;ENSG00000149636|ENST00000373750|DSN1	nc|ENSG00000149636|Q9H410-2|DSN1	nc|ENSG00000149636|Q9H410-2|DSN1	MULTI-SECPEP	A375_MHC_IP_R1	1	433.274169921875	3	432.874175	1295.6007	0.0005451	2.3596E-07	-0.1505	-6.5148E-05	-0.14996	-6.4912E-05	432.8741638756545	22.992	0.30116	22.992	22.773	23.074	0					11	5	3	0	0	0	0.91057	1	6268	6268		10.315	3.6918	1	2945300			4003	5823	2641	2682	3918	3918					-0.03527942387245275
ASYRVTVPE	9	Unmodified	_ASYRVTVPE_					0	0	0		ENSG00000166341|ENST00000299441|DCHS1;DCHS1|p.D2614N|1|0.37|ENSG00000166341|chr11:6623836-6623836|C/T|missense_variant	ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	A375_MHC_IP_R2	2	511.1782531738281	2	511.269281	1020.52401	-0.72288	-0.00036959	2.4603	0.0012579	1.7374	0.00088827	511.27111793480054	63.031	0.65629	63.774	63.282	63.938	0.74263					17	12	2	0	0	0	0.64136	1	23869	23869		12.241	0.60036	1	1809900			4004	7061	2642	2683	3919	3919					0.0145686606357458
ASYTRHLV	8	Unmodified	_ASYTRHLV_					0	0	0			REV__nc|ENSG00000070882|Q9H4L5-8|OSBPL3	REV__nc|ENSG00000070882|Q9H4L5-8|OSBPL3	MULTI-SECPEP	A375_MHC_IP_R2	2	473.6369934082031	2	473.758884	945.503215	-0.84773	-0.00040162	0.1218	5.7703E-05	-0.72593	-0.00034392	473.75884680710203	28.223	0.30344	28.902	28.757	29.06	0.67857					10	5	3	0	0	0	0.84748	1	9722	9722		21.747	0	1	1853300	+		4005	16582	2643	2684	3920	3920					0.02828320474566226
ASYVGQAK	8	Unmodified	_ASYVGQAK_					0	0	0			REV__nc|ENSG00000171551|O95672-2|ECEL1	REV__nc|ENSG00000171551|O95672-2|ECEL1	MULTI-SECPEP	A375_MHC_IP_R2	2	412.61895751953125	2	412.21906	822.423567	-0.024495	-1.0097E-05	-0.095455	-3.9348E-05	-0.11995	-4.9446E-05	412.21896489297	39.708	0.8631	40.483	39.965	40.828	0.77451					25	16	3	0	0	0	0.69122	1	14669	14669		48.346	3.9388	1	6039900	+		4006	21076	2644	2685	3921	3921					0.005252538005606766
ATAAPHRT	8	Unmodified	_ATAAPHRT_					0	0	0			REV__ENSG00000121680|ENST00000378750|PEX16	REV__ENSG00000121680|ENST00000378750|PEX16	MSMS	A375_MHC_IP_R2	2	412.6210021972656	2	412.722301	823.43005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.418	1	61.163	60.663	61.663	0.74503								0	0	0	0.16876	1	22876	22876		7.9102	1.187	1		+		4007	18168	2645	2686	3922	3922					0.01127191751936607
ATAAPNSQ	8	Unmodified	_ATAAPNSQ_					0	0	0		ENST00000462558.5_1_7:97937677-98030347:-|nuORF;ENSG00000006453|ENST00000005260|BAIAP2L1	ENST00000462558.5_1_7:97937677-98030347:-|nuORF	ENST00000462558.5_1_7:97937677-98030347:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	759.7608642578125	1	759.363158	758.355882	-0.7068	-0.00053672	-0.89552	-0.00068003	-1.6023	-0.0012167	759.363197895543	111.54	1.4327	112.27	111.69	113.12	0.72816					39	27	2	0	0	0	0.86765	1	41896	41896		18.135	0	1	3464400			4008	914	2646	2687	3923	3923					-0.0329619613023624
ATAAQVLENH	10	Unmodified	_ATAAQVLENH_					0	0	0		ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	MULTI-SECPEP	A375_MHC_IP_R1	1	527.1660766601562	2	527.269813	1052.52507	-0.38076	-0.00020076	-2.888	-0.0015228	-3.2688	-0.0017235	527.2683008555165	35.928	0.20345	35.928	35.83	36.033	0					5	3	2	0	0	0	0.92514	1	12009	12009		12.241	8.6442	1	781290			4009	1384	2647	2688	3924	3924					0.0009108043248033937
ATAATTSH	8	Unmodified	_ATAATTSH_					0	0	0		ENST00000525904.5_1_11:679767-681035:-|nuORF	ENST00000525904.5_1_11:679767-681035:-|nuORF	ENST00000525904.5_1_11:679767-681035:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	759.2257690429688	1	759.363158	758.355882	-0.18814	-0.00014287	-1.243	-0.00094391	-1.4312	-0.0010868	759.3632898330734	112.45	1.2209	112.45	111.77	112.99	0					34	23	2	0	0	0	0.78043	1	41326	41326		12.532	0	1	4209000			4010	13075	2648	2689	3925	3925					-0.0329619613023624
ATADKVPCN	9	Unmodified	_ATADKVPCN_					0	0	0			REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E;REV__nc|ENSG00000005483|Q8IZD2-6|KMT2E	REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E	MSMS	A375_MHC_IP_R2	2	459.674072265625	2	459.72111	917.427666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.908	1	35.672	35.172	36.172	0.76338								0	0	0	0.15411	1	12628	12628		14.838	3.198	1		+		4011	16123;27088	2649	2690	3926	3926					-0.034350247680322354
ATAEPRVF	8	Unmodified	_ATAEPRVF_					0	0	0		nc|ENSG00000105137|Q6ZW31-2|SYDE1;ENSG00000105137|ENST00000342784|SYDE1	nc|ENSG00000105137|Q6ZW31-2|SYDE1	nc|ENSG00000105137|Q6ZW31-2|SYDE1	MULTI-SECPEP	A375_MHC_IP_R2	2	446.1398010253906	2	445.74016	889.465767	-0.50558	-0.00022536	-0.14711	-6.5574E-05	-0.65269	-0.00029093	445.7400799250996	39.249	0.45941	40.024	39.76	40.219	0.77451					19	8	3	0	0	0	0.30564	1	14462	14462		54.774	18.647	1	5963700			4012	2568	2650	2691	3927	3927					0.016612292089462244
ATAESRIRLI	10	Unmodified	_ATAESRIRLI_					0	0	0			REV__ENSG00000137513|ENST00000281038|NARS2	REV__ENSG00000137513|ENST00000281038|NARS2	MULTI-SECPEP	A375_MHC_IP_R2	2	377.2484130859375	3	377.227779	1128.66151	-0.25591	-9.6535E-05	-0.038279	-1.444E-05	-0.29419	-0.00011097	377.22761194423543	25.805	0.76253	26.465	26.094	26.857	0.65992					21	14	2	0	0	0	0.88038	1	8802	8802		21.799	6.0608	1	3141100	+		4013	19017	2651	2692	3928	3928					0.10232194662989968
ATAFIVLLAPK	11	Unmodified	_ATAFIVLLAPK_					0	0	0		tr|U7SHC0|U7SHC0_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02191PE=3SV=1	tr|U7SHC0|U7SHC0_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02191PE=3SV=1	tr|U7SHC0|U7SHC0_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02191PE=3SV=1	MSMS	A375_MHC_IP_R1	1	381.91461181640625	3	381.909387	1142.70633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.5	1	19.5	19	20	0								0	0	0	0.16338	1	4854	4854		1.1098	0.14748	1				4014	29421	2652	2693	3929	3929					0.14068625476306806
ATAGPRLGW	9	Unmodified	_ATAGPRLGW_					0	0	0		nc|ENSG00000110841|Q86W92-3|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	MULTI-MSMS	A375_MHC_IP_R1	1	465.15362548828125	2	464.753601	927.49265	-0.20833	-9.6821E-05	0.12358	5.7434E-05	-0.084749	-3.9388E-05	464.75363935796025	54.792	0.81256	54.792	54.415	55.228	0					41	15	4	0	0	0	0.0099819	2	19526	19526;19581		122.18	73.833	1	34063000			4015	14540	2653	2694	3930;3931	3930					0.02600337820126697
ATAGPRLGW	9	Unmodified	_ATAGPRLGW_					0	0	0		nc|ENSG00000110841|Q86W92-3|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	MULTI-MSMS	A375_MHC_IP_R2	2	464.67901611328125	2	464.753601	927.49265	-1.003	-0.00046614	0.22684	0.00010543	-0.77615	-0.00036072	464.75365037798247	53.935	0.76691	54.686	54.301	55.068	0.75105					38	14	4	0	0	0	0.0096896	3	20400	20319;20400;20421		122.18	73.833	1	25425000			4016	14540	2653	2694	3932;3933;3934	3933					0.02600337820126697
ATAGVVTSV	9	Unmodified	_ATAGVVTSV_					0	0	0		ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF	ENSG00000013588|ENST00000014914|GPRC5A	ENSG00000013588|ENST00000014914|GPRC5A	MULTI-SECPEP	A375_MHC_IP_R1	1	805.0236206054688	1	804.44616	803.438883	-0.23361	-0.00018793	-0.082622	-6.6465E-05	-0.31623	-0.00025439	804.4459742954086	45.763	0.60735	45.763	45.384	45.992	0					19	11	3	0	0	0	0.059859	1	16080	16080		62.573	12.64	1	6546200			4017	1026	2654	2695	3935	3935					0.02930120597750374
ATAGVVTSV	9	Unmodified	_ATAGVVTSV_					0	0	0		ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF	ENSG00000013588|ENST00000014914|GPRC5A	ENSG00000013588|ENST00000014914|GPRC5A	MULTI-SECPEP	A375_MHC_IP_R2	2	805.0237426757812	1	804.44616	803.438883	-1.0206	-0.00082101	0.275	0.00022122	-0.74559	-0.00059979	804.4462793358178	44.903	0.51058	45.672	45.441	45.951	0.7691					16	9	2	0	0	0	0.50702	1	16883	16883		19.257	4.4187	1	5849000			4018	1026	2654	2695	3936	3936					0.02930120597750374
ATAHFVSALY	10	Unmodified	_ATAHFVSALY_					0	0	0			REV__ENSG00000149257|ENST00000358171|SERPINH1	REV__ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	A375_MHC_IP_R2	2	540.67919921875	2	540.279649	1078.54475	-0.74144	-0.00040059	-0.67322	-0.00036372	-1.4147	-0.00076431	540.2791479445729	79.423	0.45665	80.168	79.997	80.453	0.74474					11	8	2	0	0	0	0.6502	1	30159	30159		17.113	0.1706	1	2132900	+		4019	19670	2655	2696	3937	3937					0.00861456443226416
ATAKQRLGKI	10	Unmodified	_ATAKQRLGKI_					0	0	0		ENSG00000197724|ENST00000359246|PHF2;ENST00000478996.1_1_7:139790896-139791898:-|nuORF;ENST00000472616.1_1_7:139790896-139796717:-|nuORF;ENSG00000006459|ENST00000397560|KDM7A	ENSG00000197724|ENST00000359246|PHF2;ENSG00000006459|ENST00000397560|KDM7A	ENSG00000006459|ENST00000397560|KDM7A	MULTI-SECPEP	A375_MHC_IP_R1	1	362.96441650390625	3	362.564502	1084.67168	-0.088511	-3.2091E-05	-0.1094	-3.9666E-05	-0.19791	-7.1757E-05	362.5644722119842	23.863	0.30433	23.863	23.687	23.991	0					8	5	2	0	0	0	0.88918	1	6679	6679		5.0475	0	1	4222700			4020	915;9188	2656	2697	3938	3938					0.13272802388246419
ATALENRSHKV	11	Unmodified	_ATALENRSHKV_					0	0	0		ENSG00000203910|ENST00000370375|C1orf146	ENSG00000203910|ENST00000370375|C1orf146	ENSG00000203910|ENST00000370375|C1orf146	MULTI-MSMS	A375_MHC_IP_R2	2	409.2906188964844	3	409.226438	1224.65748	-0.42972	-0.00017585	-0.55958	-0.00022899	-0.9893	-0.00040485	409.2263021488755	25.509	1.0187	26.152	25.77	26.789	0.64368					24	19	2	0	0	0	0.72651	1	8554	8554		12.228	2.4633	1	2640400			4021	9401	2657	2698	3939	3939					0.05414105169279537
ATALPPRLQPV	11	Unmodified	_ATALPPRLQPV_					0	0	0		ENSG00000213694|ENST00000358157|S1PR3	ENSG00000213694|ENST00000358157|S1PR3	ENSG00000213694|ENST00000358157|S1PR3	MSMS	A375_MHC_IP_R2	2	581.90625	2	581.850773	1161.68699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.573	1	94.318	93.818	94.818	0.74474								0	0	0	0.16213	1	35572	35572		7.609	0.50723	1				4022	9578	2658	2699	3940	3940					0.11261669185410028
ATANEIHFW	9	Unmodified	_ATANEIHFW_					0	0	0		AMBRA1|p.H985Qfs*7|1|0.15|ENSG00000110497|chr11:46433495-46433495|A/-|frameshift_variant;nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1;AMBRA1|p.Y510*|1|0.18|ENSG00000110497|chr11:46542487-46542487|A/-|frameshift_variant;nc|ENSG00000110497|Q9C0C7-6|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1	AMBRA1|p.H985Qfs*7|1|0.15|ENSG00000110497|chr11:46433495-46433495|A/-|frameshift_variant	AMBRA1|p.H985Qfs*7|1|0.15|ENSG00000110497|chr11:46433495-46433495|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	544.5653076171875	2	544.761623	1087.50869	-0.57565	-0.00031359	3.0789	0.0016772	2.5032	0.0013637	544.7634621444321	79.974	0.87148	79.974	79.367	80.238	0					31	16	3	0	0	0	0.35487	1	29162	29162		43.858	21.2	1	2928700			4023	122	2659	2700	3941	3941					-0.031560007336111084
ATAQLAGHSM	10	Unmodified	_ATAQLAGHSM_					0	0	0		nc|ENSG00000111879|Q8NB25-2|FAM184A;FAM184A|p.Q613Hfs*10|1|0.23|ENSG00000111879|chr6:119003599-119003599|T/-|frameshift_variant;nc|ENSG00000111879|Q8NB25-3|FAM184A;ENSG00000111879|ENST00000338891|FAM184A	nc|ENSG00000111879|Q8NB25-2|FAM184A	nc|ENSG00000111879|Q8NB25-2|FAM184A	MSMS	A375_MHC_IP_R1	1	493.6872863769531	2	493.739834	985.465115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.543	1	30.543	30.043	31.043	0								0	0	0	0.14483	1	9716	9716		27.629	2.2295	1				4024	14545	2660	2701	3942	3942					-0.028199335023941785
ATAQVPVR	8	Unmodified	_ATAQVPVR_					0	0	0			REV__ENST00000478927.5_1_3:119298448-119301006:+|nuORF	REV__ENST00000478927.5_1_3:119298448-119301006:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	421.1322326660156	2	421.248152	840.481751	0.079481	3.3481E-05	-0.1726	-7.2709E-05	-0.093123	-3.9228E-05	421.24802733638336	36.059	0.71264	36.059	35.676	36.389	0					24	13	2	0	0	0	0.46048	1	11994	11994		54.774	6.4277	1	12336000	+		4025	25127	2661	2702	3943	3943					0.05512935445858602
ATASAGVPATV	11	Unmodified	_ATASAGVPATV_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MSMS	A375_MHC_IP_R2	2	472.6814880371094	2	472.756007	943.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.836	1	54.587	54.087	55.087	0.75105								0	0	0	0.15016	1	20329	20329		20.415	2.2796	1				4026	4852	2662	2703	3944	3944					0.023451771722307058
ATASEWRL	8	Unmodified	_ATASEWRL_					0	0	0		ENSG00000166813|ENST00000394412|KIF7	ENSG00000166813|ENST00000394412|KIF7	ENSG00000166813|ENST00000394412|KIF7	MULTI-SECPEP	A375_MHC_IP_R1	1	467.64300537109375	2	467.243067	932.47158	-0.16703	-7.8044E-05	1.1904	0.00055618	1.0233	0.00047814	467.2431298833953	40.484	0.5585	40.484	40.254	40.813	0					25	10	4	0	0	0	0.87643	1	13907	13907		32.305	8.2849	1	6399700			4027	7112	2663	2704	3945	3945					0.0026432772061752985
ATASFFAAGV	10	Unmodified	_ATASFFAAGV_					0	0	0			REV__tr|U7STS2|U7STS2_FUSNUDAACSfamilydicarboxylate/aminoacid:cation(Na+orH+)symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01168PE=4SV=1	REV__tr|U7STS2|U7STS2_FUSNUDAACSfamilydicarboxylate/aminoacid:cation(Na+orH+)symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01168PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	471.6398010253906	2	471.239993	940.465432	-0.23089	-0.00010881	0.83856	0.00039516	0.60767	0.00028636	471.24036639075644	78.455	0.45533	78.455	78.251	78.707	0					14	8	2	0	0	0	0.53946	1	28653	28653		25.399	5.9603	1	1515700	+		4028	28502	2664	2705	3946	3946					-0.007181905109064246
ATASFFAAGV	10	Unmodified	_ATASFFAAGV_					0	0	0			REV__tr|U7STS2|U7STS2_FUSNUDAACSfamilydicarboxylate/aminoacid:cation(Na+orH+)symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01168PE=4SV=1	REV__tr|U7STS2|U7STS2_FUSNUDAACSfamilydicarboxylate/aminoacid:cation(Na+orH+)symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01168PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	471.239993	940.465432	-0.59754	-0.00028159	1.1531	0.00054338	0.55555	0.0002618	471.2406712254916	77.615	0.56198	78.358	78.062	78.624	0.74294	-0.048553	0.0001135	NaN	25.399	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1540600	+		4029	28502	2664	2705							-0.007181905109064246
ATATPLWRR	9	Unmodified	_ATATPLWRR_					0	0	0		nc|ENSG00000179348|P23769-2|GATA2;ENSG00000179348|ENST00000341105|GATA2;nc|ENSG00000102145|P15976-3|GATA1;nc|ENSG00000102145|P15976-2|GATA1;ENSG00000102145|ENST00000376670|GATA1	nc|ENSG00000179348|P23769-2|GATA2	nc|ENSG00000179348|P23769-2|GATA2	MULTI-SECPEP	A375_MHC_IP_R2	2	358.6011047363281	3	357.873447	1070.59851	-0.55539	-0.00019876	0.16129	5.7721E-05	-0.3941	-0.00014104	357.8734588755238	22.626	0.66458	23.256	22.907	23.572	0.63015					23	12	3	0	0	0	0.71541	1	7291	7291		7.609	7.609	1	1828900			4030	8224	2665	2706	3947	3947					0.06603673665608767
ATCAWLGSQMH	11	Unmodified	_ATCAWLGSQMH_					0	0	0			REV__nc|ENSG00000136099|O95206-2|PCDH8	REV__nc|ENSG00000136099|O95206-2|PCDH8	MSMS	A375_MHC_IP_R1	1	402.1233825683594	3	402.179443	1203.5165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.369	1	41.369	40.869	41.869	0								0	0	0	0.16286	1	14276	14276		3.8459	1.9395	1		+		4031	18916	2666	2707	3948	3948					-0.07711932800020804
ATCAWLGSQMH	11	Unmodified	_ATCAWLGSQMH_					0	0	0			REV__nc|ENSG00000136099|O95206-2|PCDH8	REV__nc|ENSG00000136099|O95206-2|PCDH8	MSMS	A375_MHC_IP_R2	2	402.1231994628906	3	402.179443	1203.5165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.438	1	41.213	40.713	41.713	0.77451								0	0	0	0.16286	1	14974	14974		3.8459	0.77364	1		+		4032	18916	2666	2707	3949	3949					-0.07711932800020804
ATCRYDDL	8	Unmodified	_ATCRYDDL_					0	0	0			REV__ENSG00000196569|ENST00000421865|LAMA2	REV__ENSG00000196569|ENST00000421865|LAMA2	MSMS	A375_MHC_IP_R1	1	478.6098937988281	2	478.710742	955.406931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.898	1	44.898	44.398	45.398	0								0	0	0	0.16876	1	15685	15685		9.3474	3.587	1		+		4033	22209	2667	2708	3950	3950					-0.0725561514769879
ATDAAIRVW	9	Unmodified	_ATDAAIRVW_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-SECPEP	A375_MHC_IP_R1	1	502.172119140625	2	501.771991	1001.52943	-0.31294	-0.00015702	0.19407	9.738E-05	-0.11886	-5.9643E-05	501.7720420075101	63.244	0.76941	63.244	62.863	63.632	0					30	14	3	0	0	0	0.013591	1	22821	22821		118.07	64.236	1	9473400			4034	8524	2668	2709	3951	3951					0.028725896460287004
ATDAAIRVW	9	Unmodified	_ATDAAIRVW_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-SECPEP	A375_MHC_IP_R2	2	502.1716613769531	2	501.771991	1001.52943	-0.73133	-0.00036696	0.1899	9.5286E-05	-0.54143	-0.00027168	501.77203149980505	62.384	0.66007	63.127	62.774	63.434	0.74263					31	12	3	0	0	0	0.013591	1	23624	23624		118.07	64.236	1	6463600			4035	8524	2668	2709	3952	3952					0.028725896460287004
ATDAGKIPF	9	Unmodified	_ATDAGKIPF_					0	0	0		nc|ENSG00000145284|Q86SK9-2|SCD5;ENSG00000145284|ENST00000319540|SCD5	nc|ENSG00000145284|Q86SK9-2|SCD5	nc|ENSG00000145284|Q86SK9-2|SCD5	MULTI-MSMS	A375_MHC_IP_R2	2	460.6477355957031	2	460.247818	918.481082	-0.52144	-0.00023999	0.18084	8.3232E-05	-0.3406	-0.00015676	460.2478907533524	41.518	0.35546	42.292	42.149	42.504	0.77451					14	6	3	0	0	0	0.41409	1	15440	15440		24.021	2.4836	1	2145500			4036	5550	2669	2710	3953	3953					0.018580960061285623
ATDDFKSKY	9	Unmodified	_ATDDFKSKY_					0	0	0		ENSG00000204889|ENST00000377755|KRT40;CON__Q6IFU5	ENSG00000204889|ENST00000377755|KRT40	ENSG00000204889|ENST00000377755|KRT40	MULTI-SECPEP	A375_MHC_IP_R1	1	537.6416015625	2	537.758746	1073.50294	-0.49448	-0.00026591	-0.48489	-0.00026076	-0.97937	-0.00052667	537.7583121269217	71.553	0.60339	71.553	71.262	71.866	0					18	11	3	0	0	0	0.69504	1	26080	26080		18.135	12.838	1	6190400		+	4037	623	2670	2711	3954	3954					-0.03087144035930578
ATDDGAIRVW	10	Unmodified	_ATDDGAIRVW_					0	0	0		ENSG00000141564|ENST00000306801|RPTOR;nc|ENSG00000141564|Q8N122-3|RPTOR	ENSG00000141564|ENST00000306801|RPTOR	ENSG00000141564|ENST00000306801|RPTOR	MULTI-SECPEP	A375_MHC_IP_R1	1	552.6775512695312	2	552.277638	1102.54072	-0.59487	-0.00032853	-0.23544	-0.00013003	-0.8303	-0.00045856	552.277308248874	64.552	0.91414	64.552	64.04	64.954	0					43	17	3	0	0	0	0.17899	1	23336	23336		57.249	35.712	1	3022200			4038	5257	2671	2712	3955	3955					-0.0064463305047866015
ATDDGAIRVW	10	Unmodified	_ATDDGAIRVW_					0	0	0		ENSG00000141564|ENST00000306801|RPTOR;nc|ENSG00000141564|Q8N122-3|RPTOR	ENSG00000141564|ENST00000306801|RPTOR	ENSG00000141564|ENST00000306801|RPTOR	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	552.277638	1102.54072	-0.71263	-0.00039357	-0.51512	-0.00028449	-1.2277	-0.00067806	552.2771130514914	63.711	1.0174	64.451	63.987	65.004	0.74022	-0.050689	-0.00019459	NaN	57.249	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2871500			4039	5257	2671	2712							-0.0064463305047866015
ATDDSLHQL	9	Unmodified	_ATDDSLHQL_					0	0	0		ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	MULTI-SECPEP	A375_MHC_IP_R1	1	500.6401672363281	2	500.240721	998.466889	-0.43152	-0.00021586	-0.38304	-0.00019161	-0.81456	-0.00040748	500.240714319184	34.55	0.45468	34.55	34.253	34.708	0					18	8	3	0	0	0	0.13208	1	11399	11399		66.457	26.507	1	3822000			4040	2520	2672	2713	3956	3956					-0.0324060121280354
ATDDSLHQL	9	Unmodified	_ATDDSLHQL_					0	0	0		ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	MULTI-MSMS	A375_MHC_IP_R2	2	500.640380859375	2	500.240721	998.466889	-1.0884	-0.00054444	0.60335	0.00030182	-0.48501	-0.00024262	500.24093665667965	33.864	0.40475	34.616	34.348	34.753	0.75225					17	7	3	0	0	0	0.066859	1	12176	12176		57.722	21.595	1	3074600			4041	2520	2672	2713	3957	3957					-0.0324060121280354
ATDDYFQCNT	10	Unmodified	_ATDDYFQCNT_					0	0	0		nc|ENSG00000173320|Q9P2F5-2|STOX2;ENSG00000173320|ENST00000308497|STOX2	nc|ENSG00000173320|Q9P2F5-2|STOX2	nc|ENSG00000173320|Q9P2F5-2|STOX2	MULTI-MSMS	A375_MHC_IP_R2	2	393.5534362792969	3	393.153728	1176.43935	-0.17723	-6.9677E-05	0.69977	0.00027512	0.52254	0.00020544	393.15397636909915	76.426	0.60816	77.167	76.893	77.501	0.74052					20	11	2	0	0	0	0.67512	1	29034	29034		9.7643	0	1	1699100			4042	7787	2673	2714	3958	3958					-0.141808725353485
ATDFDVLSY	9	Unmodified	_ATDFDVLSY_					0	0	0		ENST00000445499.2_1_3:45730957-45754662:+|nuORF;ENST00000463237.5_1_3:45730948-45754703:+|nuORF;ENSG00000211456|ENST00000389061|SACM1L;ENST00000463347.5_1_3:45730948-45748420:+|nuORF	ENST00000445499.2_1_3:45730957-45754662:+|nuORF	ENST00000445499.2_1_3:45730957-45754662:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1030.6820068359375	1	1030.47277	1029.46549	0.40631	0.00041869	0.33286	0.000343	0.73917	0.0007617	1030.4729053640326	107.41	1.1725	107.41	106.98	108.15	0					50	22	3	0	0	0	0.010037	1	39389	39389		96.285	25.151	1	27159000			4043	9550	2674	2715	3959	3959					-0.048062353015666304
ATDFDVLSY	9	Unmodified	_ATDFDVLSY_					0	0	0		ENST00000445499.2_1_3:45730957-45754662:+|nuORF;ENST00000463237.5_1_3:45730948-45754703:+|nuORF;ENSG00000211456|ENST00000389061|SACM1L;ENST00000463347.5_1_3:45730948-45748420:+|nuORF	ENST00000445499.2_1_3:45730957-45754662:+|nuORF	ENST00000445499.2_1_3:45730957-45754662:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1029.679931640625	1	1030.47277	1029.46549	-0.021298	-2.1947E-05	0.19462	0.00020055	0.17333	0.00017861	1030.472723494648	106.66	1.1174	107.42	106.99	108.1	0.75977					46	21	3	0	0	0	0.76187	1	40231	40231		7.2892	0	1	31357000			4044	9550	2674	2715	3960	3960					-0.048062353015666304
ATDFKFAMYPP	11	Unmodified	_ATDFKFAMYPP_					0	0	0		ENST00000536795.1_1_12:4387934-4398180:+|nuORF;ENSG00000118971|ENST00000261254|CCND2	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	430.59002685546875	3	429.874125	1286.60055	-0.16382	-7.0421E-05	1.3555	0.00058268	1.1916	0.00051226	429.8746162040929	43.929	0.40671	43.929	43.706	44.113	0					9	7	2	0	0	0	0.99424	1	15233	15233		2.2527	0	1	949480			4045	3567	2675	2716	3961	3961					-0.031290784314478515
ATDFYVSGNS	10	Unmodified	_ATDFYVSGNS_					0	0	0			REV__nc|ENSG00000110619|P49589-2|CARS1	REV__nc|ENSG00000110619|P49589-2|CARS1	MSMS	A375_MHC_IP_R1	1	530.6528930664062	2	530.732729	1059.4509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.409	1	47.409	46.909	47.909	0								0	0	0	0.14555	1	16675	16675		26.268	8.1218	1		+		4046	17633	2676	2717	3962	3962					-0.07644307449709231
ATDGGDLSLTV	11	Unmodified	_ATDGGDLSLTV_					0	0	0			REV__ENSG00000117983|ENST00000529681|MUC5B	REV__ENSG00000117983|ENST00000529681|MUC5B	MSMS	A375_MHC_IP_R2	2	524.7130126953125	2	524.761486	1047.50842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.64	1	103.41	102.91	103.91	0.76428								0	0	0	0.15377	1	38887	38887		18.146	1.2041	1		+		4047	18026	2677	2718	3963	3963					-0.013434652441446815
ATDGKVLLW	9	Unmodified	_ATDGKVLLW_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MSMS	A375_MHC_IP_R1	1	502.18463134765625	2	501.784567	1001.55458	-0.50842	-0.00025512	0.34352	0.00017237	-0.1649	-8.2743E-05	501.78468881647575	80.336	0.81121	80.336	80.034	80.846	0					25	15	2	0	0	0	0.073067	1	29314	29314		55.503	5.5697	1	3404200			4048	3584	2678	2719	3964	3964					0.05386644448606148
ATDGKVLLW	9	Unmodified	_ATDGKVLLW_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-SECPEP	A375_MHC_IP_R2	2	502.18426513671875	2	501.784567	1001.55458	-0.50989	-0.00025585	0.32902	0.0001651	-0.18086	-9.0755E-05	501.78469021527576	79.371	0.71024	80.116	79.846	80.556	0.74473					24	13	2	0	0	0	0.34746	1	30117	30117		38.176	0	1	3012700			4049	3584	2678	2719	3965	3965					0.05386644448606148
ATDGKVLLW	9	Unmodified	_ATDGKVLLW_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	501.784567	1001.55458	-0.50842	-0.00025512	0.34352	0.00017237	-0.1649	-8.2743E-05	501.78468881647575	80.336	0.81121	80.336	80.034	80.846	0	0.10996	3.9455E-06	NaN	55.503	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3404200			4050	3584	2678	2719							0.05386644448606148
ATDHPHPSTP	10	Unmodified	_ATDHPHPSTP_					0	0	0		nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF;nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT	nc|ENSG00000122966|O14578-3|CIT	nc|ENSG00000122966|O14578-3|CIT	MULTI-MSMS	A375_MHC_IP_R1	1	530.6461181640625	2	530.246338	1058.47812	-0.48261	-0.0002559	-0.044927	-2.3822E-05	-0.52754	-0.00027973	530.2462817536699	56.779	0.40758	56.779	56.548	56.956	0					13	7	2	0	0	0	0.36703	1	20354	20354		36.127	9.8589	1	3753900			4051	3818	2679	2720	3966	3966					-0.04877779118669423
ATDHPHPSTP	10	Unmodified	_ATDHPHPSTP_					0	0	0		nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF;nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT	nc|ENSG00000122966|O14578-3|CIT	nc|ENSG00000122966|O14578-3|CIT	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	530.246338	1058.47812	-0.48261	-0.0002559	-0.044927	-2.3822E-05	-0.52754	-0.00027973	530.2462817536699	56.779	0.40758	56.779	56.548	56.956	0	-0.011128	0.00018463	NaN	36.127	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3753900			4052	3818	2679	2720							-0.04877779118669423
ATDIFSYLVEY	11	Unmodified	_ATDIFSYLVEY_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;ENST00000554574.1_1_14:91942052-91948315:-|nuORF	nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENST00000554574.1_1_14:91942052-91948315:-|nuORF	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	A375_MHC_IP_R1	1	661.221435546875	2	660.821544	1319.62853	-0.76338	-0.00050446	0.21451	0.00014175	-0.54887	-0.00036271	660.82159961449	133.02	0.20551	133.02	132.89	133.1	0					5	3	2	0	0	0	0.43152	1	51326	51326		36.506	27.123	1	4183500			4053	2219;13422	2680	2721	3967	3967					-0.01849476970392061
ATDIFSYLVEY	11	Unmodified	_ATDIFSYLVEY_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;ENST00000554574.1_1_14:91942052-91948315:-|nuORF	nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENST00000554574.1_1_14:91942052-91948315:-|nuORF	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MATCH	A375_MHC_IP_R2	2		2	660.821544	1319.62853	-0.82982	-0.00054836	0.22877	0.00015118	-0.60105	-0.00039719	660.8215567656055	132.9	0.25436	133.07	132.89	133.15	0.16487	0.022995	9.4647E-06	NaN	36.506	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2586100			4054	2219;13422	2680	2721							-0.01849476970392061
ATDIKITVY	9	Unmodified	_ATDIKITVY_					0	0	0		ENSG00000124596|ENST00000424266|OARD1	ENSG00000124596|ENST00000424266|OARD1	ENSG00000124596|ENST00000424266|OARD1	MULTI-SECPEP	A375_MHC_IP_R2	2	512.634765625	2	512.289682	1022.56481	-0.77365	-0.00039633	-0.45618	-0.0002337	-1.2298	-0.00063003	512.2892617407767	62.688	0.75758	63.431	63.13	63.888	0.74263					32	14	3	0	0	0	0.59614	1	23736	23736		28.495	12.345	1	5138200			4055	3918	2681	2722	3968	3968					0.05443207383166282
ATDLDVANFY	10	Unmodified	_ATDLDVANFY_					0	0	0		ENSG00000142252|ENST00000270257|GEMIN7	ENSG00000142252|ENST00000270257|GEMIN7	ENSG00000142252|ENST00000270257|GEMIN7	MULTI-MSMS	A375_MHC_IP_R1	1	1128.3670654296875	1	1128.52078	1127.5135	0.10744	0.00012124	0.53837	0.00060757	0.64581	0.00072881	1128.5215989236121	104.68	0.70821	104.68	104.29	104.99	0					33	13	3	0	0	0	0.30287	1	38348	38348		39.95	18.203	1	7518600			4056	5301	2682	2723	3969	3969					-0.045151613815278324
ATDLDVANFY	10	Unmodified	_ATDLDVANFY_					0	0	0		ENSG00000142252|ENST00000270257|GEMIN7	ENSG00000142252|ENST00000270257|GEMIN7	ENSG00000142252|ENST00000270257|GEMIN7	MULTI-MATCH	A375_MHC_IP_R2	2		1	1128.52078	1127.5135	0.17084	0.00019279	0.2182	0.00024624	0.38904	0.00043904	1128.521246396843	104.04	0.86363	104.8	104.24	105.11	0.76308	0.057871	-0.00011145	NaN	39.95	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6749500			4057	5301	2682	2723							-0.045151613815278324
ATDLEDYSIK	10	Unmodified	_ATDLEDYSIK_					0	0	0		RANBP3L|p.T374P|1|0.44|ENSG00000164188|chr5:36253694-36253694|T/G|missense_variant;ENSG00000164188|ENST00000296604|RANBP3L;nc|ENSG00000164188|Q86VV4-3|RANBP3L	RANBP3L|p.T374P|1|0.44|ENSG00000164188|chr5:36253694-36253694|T/G|missense_variant	RANBP3L|p.T374P|1|0.44|ENSG00000164188|chr5:36253694-36253694|T/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	578.2431640625	2	577.782418	1153.55028	0.053707	3.1031E-05	-0.25184	-0.00014551	-0.19814	-0.00011448	577.7823027215073	48.086	0.75811	48.086	47.567	48.325	0					37	14	3	0	0	0	0.48529	1	16958	16958		29.082	0	1	6753600			4058	6799	2683	2724	3970	3970					-0.020349095556412067
ATDLTREVY	9	Unmodified	_ATDLTREVY_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	A375_MHC_IP_R1	1	534.6717529296875	2	534.272021	1066.52949	-0.43889	-0.00023449	-0.29121	-0.00015559	-0.7301	-0.00039007	534.2718352656841	42.938	0.76241	42.938	42.638	43.4	0					41	14	4	0	0	0	0.0098082	1	14861	14861		114.19	68.487	1	17367000			4059	1082	2684	2725	3971	3971					-0.0011145514461077255
ATDLTREVY	9	Unmodified	_ATDLTREVY_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-SECPEP	A375_MHC_IP_R2	2	534.67138671875	2	534.272021	1066.52949	-0.7223	-0.0003859	-0.44445	-0.00023746	-1.1667	-0.00062336	534.2718955888188	42.218	0.8158	42.991	42.707	43.523	0.7724					40	15	4	0	0	0	0.010931	1	15661	15661		136.39	86.459	1	17212000			4060	1082	2684	2725	3972	3972					-0.0011145514461077255
ATDMPVKNQY	10	Oxidation (M)	_ATDM(Oxidation (M))PVKNQY_		ATDM(1)PVKNQY		ATDM(170)PVKNQY	0	0	1		ENSG00000142459|ENST00000538904|EVI5L;nc|ENSG00000142459|Q96CN4|EVI5L;ENST00000597440.5_1_19:7913809-7917719:+|nuORF	ENSG00000142459|ENST00000538904|EVI5L	ENSG00000142459|ENST00000538904|EVI5L	MULTI-SECPEP	A375_MHC_IP_R1	1	592.17626953125	2	591.776613	1181.53867	-0.0024801	-1.4676E-06	-0.067072	-3.9692E-05	-0.069552	-4.1159E-05	591.7765303353477	22.779	0.60492	22.779	22.469	23.074	0					24	11	3	0	0	0	0.022852	1	6105	6105		173.69	149.67	1	4255600			4061	5309	2685	2726	3973	3973		285			-0.04483429850597531
ATDMPVKNQY	10	Oxidation (M)	_ATDM(Oxidation (M))PVKNQY_					0	0	1		ENSG00000142459|ENST00000538904|EVI5L;nc|ENSG00000142459|Q96CN4|EVI5L;ENST00000597440.5_1_19:7913809-7917719:+|nuORF	ENSG00000142459|ENST00000538904|EVI5L	ENSG00000142459|ENST00000538904|EVI5L	MULTI-MATCH	A375_MHC_IP_R2	2		2	591.776613	1181.53867	-0.9119	-0.00053964	0.36707	0.00021722	-0.54483	-0.00032242	591.7768408190221	22.406	0.61341	23.025	22.744	23.358	0.61932	0.1233	0.00024555	NaN	201.57	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3345400			4062	5309	2685	2726				285			-0.04483429850597531
ATDNALLRY	9	Unmodified	_ATDNALLRY_					0	0	0		nc|ENSG00000140945|P55290-5|CDH13;ENSG00000140945|ENST00000567109|CDH13;nc|ENSG00000140945|P55290-4|CDH13	nc|ENSG00000140945|P55290-5|CDH13	nc|ENSG00000140945|P55290-5|CDH13	MULTI-SECPEP	A375_MHC_IP_R1	1	519.17431640625	2	518.774731	1035.53491	-0.49163	-0.00025504	-0.57822	-0.00029997	-1.0698	-0.00055501	518.7747249603854	52.242	0.60935	52.242	51.982	52.592	0					29	11	4	0	0	0	0.01147	1	18549	18549		110.55	74.047	1	6459700			4063	5195	2686	2727	3974	3974					0.018562684378366612
ATDNALLRY	9	Unmodified	_ATDNALLRY_					0	0	0		nc|ENSG00000140945|P55290-5|CDH13;ENSG00000140945|ENST00000567109|CDH13;nc|ENSG00000140945|P55290-4|CDH13	nc|ENSG00000140945|P55290-5|CDH13	nc|ENSG00000140945|P55290-5|CDH13	MULTI-SECPEP	A375_MHC_IP_R2	2	519.17431640625	2	518.774731	1035.53491	-0.89045	-0.00046194	-0.70666	-0.0003666	-1.5971	-0.00082854	518.7746172288769	51.522	0.55892	52.274	51.864	52.423	0.75225					28	10	4	0	0	0	0.028087	1	19345	19345		86.332	49.826	1	5915300			4064	5195	2686	2727	3975	3975					0.018562684378366612
ATDPGRLLL	9	Unmodified	_ATDPGRLLL_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.E4343Kfs*13|1|0.36|ENSG00000055609|chr7:152148900-152148900|C/-|frameshift_variant;KMT2C|p.Q2128Rfs*25|1|0.04|ENSG00000055609|chr7:152181476-152181477|CT/-|frameshift_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-MSMS	A375_MHC_IP_R1	1	478.6816711425781	2	478.282192	954.549831	0.057951	2.7717E-05	-0.29988	-0.00014343	-0.24193	-0.00011571	478.28205721243313	69.523	0.81036	69.523	69.173	69.983	0					30	15	3	0	0	0	0.11715	1	25193	25193		47.594	16.958	1	4944700			4065	1271	2687	2728	3976	3976					0.07073760305854648
ATDPGRLLL	9	Unmodified	_ATDPGRLLL_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.E4343Kfs*13|1|0.36|ENSG00000055609|chr7:152148900-152148900|C/-|frameshift_variant;KMT2C|p.Q2128Rfs*25|1|0.04|ENSG00000055609|chr7:152181476-152181477|CT/-|frameshift_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-MSMS	A375_MHC_IP_R2	2	478.68194580078125	2	478.282192	954.549831	-0.43539	-0.00020824	0.25976	0.00012424	-0.17563	-8.4002E-05	478.2822766880353	68.495	0.81023	69.23	68.918	69.728	0.73511					21	15	2	0	0	0	0.050868	1	25934	25934		63.961	25.987	1	4570600			4066	1271	2687	2728	3977	3977					0.07073760305854648
ATDPNILGR	9	Unmodified	_ATDPNILGR_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC;ENST00000536483.1_1_8:48686736-48691238:-|nuORF	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	A375_MHC_IP_R2	2	479.1615905761719	2	478.761623	955.508694	-0.95834	-0.00045881	1.88	0.00090007	0.92166	0.00044125	478.7620911785465	36.628	0.50857	37.399	37.106	37.615	0.7709					15	9	2	0	0	0	0.11629	1	13392	13392		47.749	9.7747	1	2168500			4067	9866	2688	2729	3978	3978					0.02915999266383551
ATDPNILGRTW	11	Unmodified	_ATDPNILGRTW_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC;ENST00000536483.1_1_8:48686736-48691238:-|nuORF	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	A375_MHC_IP_R1	1	623.2265014648438	2	622.325119	1242.63569	-0.43593	-0.00027129	-0.56598	-0.00035222	-1.0019	-0.00062351	622.3246166832791	77.69	0.55867	77.69	77.336	77.895	0					24	10	3	0	0	0	0.1532	1	28353	28353		60.899	34.631	1	2914100			4068	9866	2689	2730	3979	3979					0.024073004207139093
ATDPNILGRTW	11	Unmodified	_ATDPNILGRTW_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC;ENST00000536483.1_1_8:48686736-48691238:-|nuORF	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	A375_MHC_IP_R2	2	622.7255859375	2	622.325119	1242.63569	-0.74077	-0.000461	-0.09623	-5.9886E-05	-0.837	-0.00052088	622.3250328154494	76.96	0.55466	77.703	77.404	77.958	0.74294					17	10	2	0	0	0	0.13072	1	29207	29207		64.688	34.847	1	2937200			4069	9866	2689	2730	3980	3980					0.024073004207139093
ATDPNSEWKEH	11	Unmodified	_ATDPNSEWKEH_					0	0	0		ENSG00000107021|ENST00000372648|TBC1D13;nc|ENSG00000107021|Q9NVG8-3|TBC1D13	ENSG00000107021|ENST00000372648|TBC1D13	ENSG00000107021|ENST00000372648|TBC1D13	MULTI-MSMS	A375_MHC_IP_R2	2	657.689697265625	2	657.291473	1312.56839	-0.75799	-0.00049822	-0.76993	-0.00050607	-1.5279	-0.0010043	657.2907532138863	110.08	0.56351	110.82	110.58	111.14	0.73692					20	10	3	0	0	0	0.66366	1	41555	41555		18.373	1.2602	1	2357100			4070	2721	2690	2731	3981	3981					-0.07538774580893914
ATDPTIHTV	9	Unmodified	_ATDPTIHTV_					0	0	0		nc|ENSG00000086848|Q9H6U8-2|ALG9;nc|ENSG00000086848|Q9H6U8-4|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9;ENSG00000086848|ENST00000616540|ALG9	nc|ENSG00000086848|Q9H6U8-2|ALG9	nc|ENSG00000086848|Q9H6U8-2|ALG9	MULTI-MSMS	A375_MHC_IP_R1	1	478.1475830078125	2	477.748182	953.481811	-0.81862	-0.0003911	0.35155	0.00016795	-0.46708	-0.00022315	477.74829107885154	30.326	0.65473	30.326	30.099	30.754	0					31	12	3	0	0	0	0.0099443	1	9606	9606		120.45	69.595	1	31083000			4071	1847	2691	2732	3982	3982					0.0032089065518903226
ATDPTIHTV	9	Unmodified	_ATDPTIHTV_					0	0	0		nc|ENSG00000086848|Q9H6U8-2|ALG9;nc|ENSG00000086848|Q9H6U8-4|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9;ENSG00000086848|ENST00000616540|ALG9	nc|ENSG00000086848|Q9H6U8-2|ALG9	nc|ENSG00000086848|Q9H6U8-2|ALG9	MULTI-MSMS	A375_MHC_IP_R2	2	478.14776611328125	2	477.748182	953.481811	-1.1001	-0.00052557	0.52052	0.00024868	-0.57957	-0.00027689	477.7483422867125	29.658	0.65625	30.357	30.083	30.739	0.69872					30	12	4	0	0	0	0.005759	1	10343	10343		133.7	76.231	1	30296000			4072	1847	2691	2732	3983	3983					0.0032089065518903226
ATDPVTGDLY	10	Unmodified	_ATDPVTGDLY_					0	0	0		ENSG00000218336|ENST00000511685|TENM3;ENST00000502950.1_1_4:183601480-183676413:+|nuORF	ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	MULTI-MSMS	A375_MHC_IP_R1	1	526.6505737304688	2	526.250754	1050.48696	-0.25878	-0.00013618	0.049172	2.5877E-05	-0.20961	-0.00011031	526.2507527448703	71.95	1.6667	71.95	71.465	73.132	0					99	32	5	0	0	0	3.2202E-05	3	26049	26035;26049;26120		166.45	105.09	1	197270000			4073	9655	2692	2733	3984;3985;3986	3985					-0.03626850272848969
ATDPVTGDLY	10	Unmodified	_ATDPVTGDLY_					0	0	0		ENSG00000218336|ENST00000511685|TENM3;ENST00000502950.1_1_4:183601480-183676413:+|nuORF	ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	MULTI-MSMS	A375_MHC_IP_R2	2	526.6502685546875	2	526.250754	1050.48696	-0.6824	-0.00035912	-0.20355	-0.00010712	-0.88596	-0.00046624	526.2506400599673	71.302	1.5175	72.036	71.605	73.122	0.73421					93	29	5	0	0	0	2.7186E-05	2	26935	26935;27166		166.45	114.18	1	271910000			4074	9655	2692	2733	3987;3988	3987					-0.03626850272848969
ATDPVTGDLY	10	Unmodified	_ATDPVTGDLY_					0	0	0		ENSG00000218336|ENST00000511685|TENM3;ENST00000502950.1_1_4:183601480-183676413:+|nuORF	ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	MULTI-MSMS	A375_MHC_IP_R2	2	1052.895751953125	1	1051.49423	1050.48696	-0.16271	-0.00017108	-0.32911	-0.00034605	-0.49181	-0.00051714	1051.4938198874786	71.257	1.3161	71.991	71.605	72.921	0.73421					86	25	5	0	0	0	0.011479	1	26940	26940		118.89	68.962	1	253140000			4075	9655	2692	2733	3989	3989					-0.03626850272848969
ATDPVTGDLY	10	Unmodified	_ATDPVTGDLY_					0	0	0		ENSG00000218336|ENST00000511685|TENM3;ENST00000502950.1_1_4:183601480-183676413:+|nuORF	ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	MULTI-MATCH	A375_MHC_IP_R1	1		1	1051.49423	1050.48696	0.37159	0.00039072	-0.21053	-0.00022137	0.16106	0.00016935	1051.4939323750973	71.941	1.5153	71.941	71.516	73.031	0	-0.02495	6.3718E-05	NaN	118.89	86	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	287130000			4076	9655	2692	2733							-0.03626850272848969
ATDRWYDEY	9	Unmodified	_ATDRWYDEY_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5;ENST00000539304.1_1_12:7344181-7354515:+|nuORF	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-SECPEP	A375_MHC_IP_R1	1	610.1570434570312	2	609.756735	1217.49892	-0.25712	-0.00015678	0.11493	7.0079E-05	-0.14219	-8.6704E-05	609.7567357345614	55.874	0.76192	55.874	55.533	56.295	0					46	14	4	0	0	0	0.011143	1	19940	19940		114.19	90.166	1	35346000			4077	5059	2693	2734	3990	3990					-0.10113233529659738
ATDRWYDEY	9	Unmodified	_ATDRWYDEY_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5;ENST00000539304.1_1_12:7344181-7354515:+|nuORF	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-SECPEP	A375_MHC_IP_R2	2	610.1565551757812	2	609.756735	1217.49892	-0.57813	-0.00035252	0.10478	6.3892E-05	-0.47335	-0.00028863	609.7567538570485	55.219	0.81276	55.97	55.626	56.439	0.75075					47	15	4	0	0	0	0.011308	1	20811	20811		117.76	83.359	1	35996000			4078	5059	2693	2734	3991	3991					-0.10113233529659738
ATDVCVALRK	10	Unmodified	_ATDVCVALRK_					0	0	0			REV__ENST00000570069.5_1_16:1823417-1825633:+|nuORF	REV__ENST00000570069.5_1_16:1823417-1825633:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	538.32568359375	2	538.300059	1074.58556	-0.48755	-0.00026245	0.39405	0.00021212	-0.093508	-5.0336E-05	538.8030025906405	72.251	0.35378	72.251	71.968	72.321	0					9	6	2	0	0	0	0.6806	1	26207	26207		14.838	3.7238	1	1420100	+		4079	22313	2694	2735	3992	3992					0.051254744912057504
ATDVGAPFTPA	11	Unmodified	_ATDVGAPFTPA_					0	0	0			REV__ENSG00000165731|ENST00000355710|RET	REV__ENSG00000165731|ENST00000355710|RET	MULTI-MSMS	A375_MHC_IP_R1	1	524.16064453125	2	523.761289	1045.50803	-0.49999	-0.00026188	-0.16663	-8.7273E-05	-0.66662	-0.00034915	523.7611978009562	75.618	0.95683	75.618	74.958	75.915	0					39	18	4	0	0	0	0.1581	1	27523	27523		60.074	25.672	1	15514000	+		4080	20619	2695	2736	3993	3993					-0.012908401733284336
ATDVGAPFTPA	11	Unmodified	_ATDVGAPFTPA_					0	0	0			REV__ENSG00000165731|ENST00000355710|RET	REV__ENSG00000165731|ENST00000355710|RET	MULTI-SECPEP	A375_MHC_IP_R1	1	523.7416381835938	2	523.761289	1045.50803	-0.49999	-0.00026188	-0.16663	-8.7273E-05	-0.66662	-0.00034915	523.7611978009562	75.618	0.95683	75.618	74.958	75.915	0					39	18	4	0	0	0	0.78118	1	27480	27480		26.268	4.5215	1	15514000	+		4081	20619	2695	2736	3994	3994					-0.012908401733284336
ATDVGAPFTPA	11	Unmodified	_ATDVGAPFTPA_					0	0	0			REV__ENSG00000165731|ENST00000355710|RET	REV__ENSG00000165731|ENST00000355710|RET	MULTI-SECPEP	A375_MHC_IP_R2	2	524.1610717773438	2	523.761289	1045.50803	-0.59952	-0.000314	-0.11006	-5.7645E-05	-0.70958	-0.00037165	523.761207538296	74.876	0.80991	75.614	75.163	75.973	0.73752					37	15	4	0	0	0	0.2067	1	28378	28378		60.074	20.124	1	15786000	+		4082	20619	2695	2736	3995	3995					-0.012908401733284336
ATDVVEKEMY	10	Unmodified	_ATDVVEKEMY_					0	0	0		tr|U7SXD8|U7SXD8_FUSNUHistidine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hisSPE=3SV=1	tr|U7SXD8|U7SXD8_FUSNUHistidine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hisSPE=3SV=1	tr|U7SXD8|U7SXD8_FUSNUHistidine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hisSPE=3SV=1	MSMS	A375_MHC_IP_R2	2	592.6779174804688	2	592.778822	1183.54309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.339	1	22.958	22.458	23.458	0.61932								0	0	0	0.15435	1	7090	7090		6.7232	0	1				4083	29826	2696	2737	3996	3996					-0.0413396542769533
ATDWGDTQAY	10	Unmodified	_ATDWGDTQAY_					0	0	0		nc|ENSG00000149761|Q9BRQ3-2|NUDT22;ENST00000537707.1_1_11:63993896-63994784:+|nuORF;ENST00000422364.2_1_11:63994043-63994784:+|nuORF;nc|ENSG00000149761|Q9BRQ3-3|NUDT22;ENSG00000149761|ENST00000279206|NUDT22	nc|ENSG00000149761|Q9BRQ3-2|NUDT22	nc|ENSG00000149761|Q9BRQ3-2|NUDT22	MULTI-MSMS	A375_MHC_IP_R1	1	564.690185546875	2	564.235635	1126.45672	-0.42365	-0.00023904	-0.12511	-7.0593E-05	-0.54876	-0.00030963	564.2355496326134	59.297	0.81336	59.297	58.938	59.752	0					38	15	4	0	0	0	0.026732	2	21384	21301;21384		82.529	55.646	1	7561600			4084	5828	2697	2738	3997;3998	3998					-0.1014520893804729
ATDWGDTQAY	10	Unmodified	_ATDWGDTQAY_					0	0	0		nc|ENSG00000149761|Q9BRQ3-2|NUDT22;ENST00000537707.1_1_11:63993896-63994784:+|nuORF;ENST00000422364.2_1_11:63994043-63994784:+|nuORF;nc|ENSG00000149761|Q9BRQ3-3|NUDT22;ENSG00000149761|ENST00000279206|NUDT22	nc|ENSG00000149761|Q9BRQ3-2|NUDT22	nc|ENSG00000149761|Q9BRQ3-2|NUDT22	MULTI-MSMS	A375_MHC_IP_R2	2	564.6351318359375	2	564.235635	1126.45672	-0.84882	-0.00047893	-0.35168	-0.00019843	-1.2005	-0.00067736	564.2354656126544	58.796	0.71137	59.543	59.134	59.845	0.74714					34	13	3	0	0	0	0.0044674	1	22203	22203		96.367	69.483	1	6775700			4085	5828	2697	2738	3999	3999					-0.1014520893804729
ATDYHFHFY	9	Unmodified	_ATDYHFHFY_					0	0	0		nc|ENSG00000124920|Q9Y2G1-2|MYRF;ENSG00000124920|ENST00000278836|MYRF	nc|ENSG00000124920|Q9Y2G1-2|MYRF	nc|ENSG00000124920|Q9Y2G1-2|MYRF	MULTI-MSMS	A375_MHC_IP_R1	1	401.2418212890625	3	400.841813	1199.50361	-0.19145	-7.6741E-05	0.30433	0.00012199	0.11288	4.5248E-05	400.8418599479643	62.315	0.46104	62.315	62.148	62.609	0					13	8	2	0	0	0	0.2487	1	22516	22516		34.402	27.365	1	2519900			4086	3938	2698	2739	4000	4000					-0.08816304596234659
ATDYHFHFY	9	Unmodified	_ATDYHFHFY_					0	0	0		nc|ENSG00000124920|Q9Y2G1-2|MYRF;ENSG00000124920|ENST00000278836|MYRF	nc|ENSG00000124920|Q9Y2G1-2|MYRF	nc|ENSG00000124920|Q9Y2G1-2|MYRF	MULTI-MSMS	A375_MHC_IP_R2	2	401.2413330078125	3	400.841813	1199.50361	-0.34467	-0.00013816	0.064092	2.5691E-05	-0.28057	-0.00011247	400.84171855739555	61.683	0.45262	62.428	62.223	62.675	0.74503					20	8	3	0	0	0	0.14922	1	23384	23384		41.84	31.524	1	2356600			4087	3938	2698	2739	4001	4001					-0.08816304596234659
ATDYHVRVY	9	Unmodified	_ATDYHVRVY_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;FNDC3B|p.P347S|1|0.33|ENSG00000075420|chr3:172298765-172298765|C/T|missense_variant;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-SECPEP	A375_MHC_IP_R1	1	375.58929443359375	3	375.189212	1122.54581	0.16235	6.091E-05	0.23232	8.7165E-05	0.39467	0.00014808	375.189291464221	32.36	0.55909	32.36	32.075	32.634	0					33	10	4	0	0	0	0.16595	1	10430	10430		53.404	21.367	1	45940000			4088	1610	2699	2740	4002	4002					-0.010563291878725067
ATDYHVRVY	9	Unmodified	_ATDYHVRVY_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;FNDC3B|p.P347S|1|0.33|ENSG00000075420|chr3:172298765-172298765|C/T|missense_variant;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-SECPEP	A375_MHC_IP_R1	1	562.6798706054688	2	562.28018	1122.54581	-0.6253	-0.0003516	0.48813	0.00027447	-0.13718	-7.7131E-05	562.2804739200227	32.358	0.40527	32.358	32.179	32.585	0					19	7	3	0	0	0	0.044425	1	10443	10443		118.89	75.036	1	17122000			4089	1610	2699	2740	4003	4003					-0.010563291878725067
ATDYHVRVY	9	Unmodified	_ATDYHVRVY_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;FNDC3B|p.P347S|1|0.33|ENSG00000075420|chr3:172298765-172298765|C/T|missense_variant;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-SECPEP	A375_MHC_IP_R2	2	375.5892028808594	3	375.189212	1122.54581	0.27931	0.00010479	0.024032	9.0165E-06	0.30334	0.00011381	375.189172788752	31.667	0.55955	32.404	32.095	32.654	0.73691					30	10	4	0	0	0	0.16595	1	11179	11179		53.404	27.383	1	40744000			4090	1610	2699	2740	4004	4004					-0.010563291878725067
ATDYHVRVY	9	Unmodified	_ATDYHVRVY_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;FNDC3B|p.P347S|1|0.33|ENSG00000075420|chr3:172298765-172298765|C/T|missense_variant;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-SECPEP	A375_MHC_IP_R2	2	562.6800537109375	2	562.28018	1122.54581	-0.58614	-0.00032957	0.24104	0.00013553	-0.3451	-0.00019404	562.2802636891898	31.651	0.50859	32.388	32.146	32.654	0.73691					20	9	3	0	0	0	0.030244	1	11190	11190		131.27	87.409	1	13701000			4091	1610	2699	2740	4005	4005					-0.010563291878725067
ATEDPWKTNY	10	Unmodified	_ATEDPWKTNY_					0	0	0		ENSG00000139684|ENST00000378720|ESD	ENSG00000139684|ENST00000378720|ESD	ENSG00000139684|ENST00000378720|ESD	MULTI-MSMS	A375_MHC_IP_R1	1	613.1801147460938	2	612.78021	1223.54587	-0.30164	-0.00018484	0.019479	1.1937E-05	-0.28216	-0.0001729	612.7801786404443	47.442	1.168	47.442	47.055	48.223	0					70	22	4	0	0	0	1.7815E-15	1	16616	16616		224.51	174.96	1	286970000			4092	5101	2700	2741	4006	4006					-0.056963739785032885
ATEDPWKTNY	10	Unmodified	_ATEDPWKTNY_					0	0	0		ENSG00000139684|ENST00000378720|ESD	ENSG00000139684|ENST00000378720|ESD	ENSG00000139684|ENST00000378720|ESD	MULTI-MSMS	A375_MHC_IP_R2	2	613.1799926757812	2	612.78021	1223.54587	-0.35901	-0.00022	0.086362	5.2921E-05	-0.27265	-0.00016707	612.7802177008849	46.827	1.1717	47.588	47.155	48.326	0.76128					74	22	4	0	0	0	1.8327E-22	2	17466	17466;17776		238.63	189.07	1	231470000			4093	5101	2700	2741	4007;4008	4007					-0.056963739785032885
ATEEAPYWTY	10	Unmodified	_ATEEAPYWTY_					0	0	0		nc|ENSG00000111666|Q8WUD6-2|CHPT1;ENSG00000111666|ENST00000229266|CHPT1;ENST00000546490.1_1_12:102091639-102108044:+|nuORF	nc|ENSG00000111666|Q8WUD6-2|CHPT1	nc|ENSG00000111666|Q8WUD6-2|CHPT1	MULTI-MSMS	A375_MHC_IP_R1	1	616.1689453125	2	615.769311	1229.52407	-0.21539	-0.00013263	0.12851	7.9131E-05	-0.086885	-5.3501E-05	615.7692256233703	88.811	1.0168	88.811	88.409	89.426	0					54	19	4	0	0	0	3.2202E-05	3	32543	32543;32566;32590		166.45	140.18	1	28733000			4094	3009	2701	2742	4009;4010;4011	4009					-0.08151178727075603
ATEEAPYWTY	10	Unmodified	_ATEEAPYWTY_					0	0	0		nc|ENSG00000111666|Q8WUD6-2|CHPT1;ENSG00000111666|ENST00000229266|CHPT1;ENST00000546490.1_1_12:102091639-102108044:+|nuORF	nc|ENSG00000111666|Q8WUD6-2|CHPT1	nc|ENSG00000111666|Q8WUD6-2|CHPT1	MULTI-SECPEP	A375_MHC_IP_R2	2	616.1691284179688	2	615.769311	1229.52407	-0.559	-0.00034421	0.18864	0.00011616	-0.37036	-0.00022806	615.7693237102775	88.269	0.9627	89.001	88.57	89.533	0.7318					57	18	4	0	0	0	0.025558	1	33525	33525		166.45	166.45	1	31380000			4095	3009	2701	2742	4012	4012					-0.08151178727075603
ATEEDERTF	9	Unmodified	_ATEEDERTF_					0	0	0			REV__ENSG00000171115|ENST00000307271|GIMAP8	REV__ENSG00000171115|ENST00000307271|GIMAP8	MULTI-SECPEP	A375_MHC_IP_R2	2	549.0111083984375	2	549.240918	1096.46728	-0.69689	-0.00038276	-0.67168	-0.00036891	-1.3686	-0.00075167	549.2412400480847	89.655	1.4705	90.387	89.331	90.801	0.7318					37	28	3	0	0	0	0.69507	1	33804	33804		13.906	0.86358	1	1552800	+		4096	21044	2702	2743	4013	4013					-0.07709226283623138
ATEFIMNEY	9	Oxidation (M)	_ATEFIM(Oxidation (M))NEY_		ATEFIM(1)NEY		ATEFIM(96)NEY	0	0	1		ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R1	1	567.6451416015625	2	567.244615	1132.47468	-0.62115	-0.00035234	1.4806	0.00083988	0.85949	0.00048754	567.2452300074435	66.875	1.782	66.875	66.022	67.804	0					60	34	3	0	0	0	0.010171	2	24194	24152;24194		96.111	42.278	1	5332900			4097	9114	2703	2744	4014;4015	4015		417			-0.08626210007560076
ATEFIMNEY	9	Oxidation (M)	_ATEFIM(Oxidation (M))NEY_		ATEFIM(1)NEY		ATEFIM(120)NEY	0	0	1		ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R2	2	567.64453125	2	567.244615	1132.47468	-0.54015	-0.00030639	1.1155	0.00063275	0.57533	0.00032635	567.2450725027937	66.228	1.8839	66.966	65.511	67.395	0.73788					65	36	3	0	0	0	0.0099105	1	25065	25065		118.89	65.062	1	6340900			4098	9114	2703	2744	4016	4016		417			-0.08626210007560076
ATEFIMNEY	9	Unmodified	_ATEFIMNEY_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R1	1	559.7214965820312	2	559.247157	1116.47976	-0.63441	-0.00035479	0.21284	0.00011903	-0.42158	-0.00023577	559.2473226173582	90.159	0.86137	90.159	89.78	90.641	0					24	16	2	0	0	0	0.60101	2	33039	33039;33208		14.838	6.245	1	5103500			4099	9114	2703	2745	4017;4018	4017					-0.07381906144928507
ATEFIMNEY	9	Unmodified	_ATEFIMNEY_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R2	2	559.2062377929688	2	559.247157	1116.47976	-0.59528	-0.00033291	-0.70661	-0.00039517	-1.3019	-0.00072808	559.2472260019161	89.465	0.76041	90.197	89.836	90.597	0.7318					47	14	4	0	0	0	0.01001	1	34051	34051		123.45	64.772	1	6084600			4100	9114	2703	2745	4019	4019					-0.07381906144928507
ATEGDNTEF	9	Unmodified	_ATEGDNTEF_					0	0	0		ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	MSMS	A375_MHC_IP_R2	2	492.1958312988281	2	492.201261	982.38797	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.824	1	51.578	51.078	52.078	0.75406								0	0	0	0.15486	1	19118	19118		7.9102	0.62092	1				4101	2005	2704	2746	4020	4020					-0.10392873237753975
ATEGTLPNYF	10	Unmodified	_ATEGTLPNYF_					0	0	0			REV__ENST00000529357.5_1_17:43475293-43487738:-|nuORF	REV__ENST00000529357.5_1_17:43475293-43487738:-|nuORF	MSMS	A375_MHC_IP_R1	1	556.6959228515625	2	556.766571	1111.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.618	1	75.618	75.118	76.118	0								0	0	0	0.14862	1	27551	27551		20.454	0	1		+		4102	20113	2705	2747	4021	4021					-0.032708575189190014
ATEKEKVWY	9	Unmodified	_ATEKEKVWY_					0	0	0		nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-2|DDX1;DDX1|p.H629D|1|0.3|ENSG00000079785|chr2:15629611-15629611|C/G|missense_variant	nc|ENSG00000079785|Q92499-3|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	MULTI-SECPEP	A375_MHC_IP_R1	1	385.94891357421875	3	385.201118	1152.58152	-0.17012	-6.5531E-05	-0.11992	-4.6192E-05	-0.29004	-0.00011172	385.2010338487345	29.478	0.2539	29.478	29.353	29.607	0					6	4	2	0	0	0	0.65527	1	9250	9250		27.223	21.44	1	12688000			4103	1702	2706	2748	4022	4022					0.011337082691625255
ATEKLPDNI	9	Unmodified	_ATEKLPDNI_					0	0	0			REV__ENSG00000163625|ENST00000295888|WDFY3	REV__ENSG00000163625|ENST00000295888|WDFY3	MULTI-MSMS	A375_MHC_IP_R2	2	501.1870422363281	2	500.769114	999.523675	-0.65884	-0.00032992	-0.23849	-0.00011943	-0.89732	-0.00044935	500.7689776644237	72.769	0.71204	73.505	73.124	73.836	0.73541					26	13	3	0	0	0	0.38603	1	27541	27541		25.399	0	1	3304500	+		4104	20386	2707	2749	4023	4023					0.0238944634369318
ATELLAAKY	9	Unmodified	_ATELLAAKY_					0	0	0		ENSG00000084731|ENST00000264712|KIF3C;ENST00000475453.1_1_2:26177134-26203442:-|nuORF	ENSG00000084731|ENST00000264712|KIF3C	ENSG00000084731|ENST00000264712|KIF3C	MULTI-SECPEP	A375_MHC_IP_R1	1	490.1661376953125	2	490.276575	978.538597	-0.27659	-0.0001356	0.54501	0.00026721	0.26843	0.0001316	490.2767553990359	50.846	0.30225	50.846	50.663	50.966	0					9	5	2	0	0	0	0.38578	1	18028	18028		27.629	2.2295	1	1284100			4105	1802	2708	2750	4024	4024					0.048469382116991255
ATELQSMMY	9	Oxidation (M)	_ATELQSMM(Oxidation (M))Y_		ATELQSM(0.01)M(0.99)Y		ATELQSM(-20)M(20)Y	0	0	1		ENSG00000196284|ENST00000371459|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	MULTI-MSMS	A375_MHC_IP_R2	2	545.6328125	2	545.233193	1088.45183	-1.1049	-0.00060245	0.2242	0.00012224	-0.88074	-0.00048021	545.2332961235849	60.948	0.45481	61.693	61.414	61.869	0.74503					16	8	2	0	0	0	0.06083	1	23102	23102		60.074	41.928	2	3383100			4106	9022	2709	2751	4025	4025		416			-0.08885552396668572
ATELTHEDY	9	Unmodified	_ATELTHEDY_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	A375_MHC_IP_R1	1	540.1376342773438	2	539.738011	1077.46147	-0.69256	-0.0003738	-0.17459	-9.4232E-05	-0.86715	-0.00046803	539.737874506622	28.316	0.40312	28.316	28.138	28.541	0					19	7	3	0	0	0	0.0022313	3	8712	8712;8741;8767		141.83	97.968	1	10805000			4107	7003	2710	2752	4026;4027;4028	4026					-0.0741632479528107
ATELTHEDY	9	Unmodified	_ATELTHEDY_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	A375_MHC_IP_R2	2	539.6871948242188	2	539.738011	1077.46147	-0.84772	-0.00045755	0.18706	0.00010096	-0.66066	-0.00035658	539.7380555748957	27.703	0.45537	28.381	28.2	28.655	0.67857					19	8	3	0	0	0	0.0099443	3	9501	9471;9501;9549		120.45	76.592	1	10868000			4108	7003	2710	2752	4029;4030;4031	4030					-0.0741632479528107
ATERINLFY	9	Unmodified	_ATERINLFY_					0	0	0		ENSG00000144821|ENST00000693548|MYH15	ENSG00000144821|ENST00000693548|MYH15	ENSG00000144821|ENST00000693548|MYH15	MULTI-SECPEP	A375_MHC_IP_R1	1	564.1979370117188	2	563.798206	1125.58186	-0.31013	-0.00017485	-0.30512	-0.00017203	-0.61525	-0.00034688	563.7979154036532	78.13	0.55935	78.13	77.844	78.403	0					18	10	3	0	0	0	0.67323	1	28538	28538		19.362	7.7216	1	3294400			4109	5517	2711	2753	4032	4032					0.024091279889717043
ATESVSLYYY	10	Unmodified	_ATESVSLYYY_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	A375_MHC_IP_R1	1	598.7267456054688	2	598.279512	1194.54447	-0.59547	-0.00035626	0.28782	0.0001722	-0.30765	-0.00018406	598.2796601835428	90.463	0.71221	90.463	90.133	90.845	0					34	13	3	0	0	0	0.009532	1	33247	33247		92.822	70.086	1	9737800			4110	1428	2712	2754	4033	4033					-0.04502008067288443
ATESVSLYYY	10	Unmodified	_ATESVSLYYY_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-SECPEP	A375_MHC_IP_R2	2	598.6788940429688	2	598.279512	1194.54447	-0.44795	-0.000268	-0.34294	-0.00020517	-0.79089	-0.00047317	598.2792573660738	89.888	1.2749	90.62	90.236	91.511	0.7318					57	24	4	0	0	0	0.13293	1	34147	34147		74.423	56.276	1	8989900			4111	1428	2712	2754	4034	4034					-0.04502008067288443
ATETQPIVY	9	Unmodified	_ATETQPIVY_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	A375_MHC_IP_R1	1	511.6637268066406	2	511.263665	1020.51278	-0.46015	-0.00023526	0.21854	0.00011173	-0.24161	-0.00012353	511.26370474717464	57.72	1.5252	57.72	56.956	58.481	0					59	29	4	0	0	0	0.010171	1	20650	20650		96.111	46.178	1	16292000			4112	5230	2713	2755	4035	4035					0.003340439694284214
ATETQPIVY	9	Unmodified	_ATETQPIVY_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	A375_MHC_IP_R2	2	511.6631164550781	2	511.263665	1020.51278	-1.1751	-0.00060079	0.39804	0.0002035	-0.77707	-0.00039729	511.26378694844635	56.984	1.1718	57.734	57	58.172	0.75015					53	22	4	0	0	0	0.021889	1	21486	21486		81.89	39.796	1	22259000			4113	5230	2713	2755	4036	4036					0.003340439694284214
ATEVDSRWQEY	11	Unmodified	_ATEVDSRWQEY_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;ENST00000485063.1_1_1:39748843-39749872:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	A375_MHC_IP_R1	1	692.7359008789062	2	692.312406	1382.61026	-0.20129	-0.00013935	-0.66841	-0.00046275	-0.86969	-0.0006021	692.8133990400048	48.58	0.35437	48.58	48.426	48.78	0					10	6	2	0	0	0	0.59376	1	17106	17106		23.801	18.069	1	1803700			4114	4099;14587	2714	2756	4037	4037					-0.06574218892387762
ATFFFRHF	8	Unmodified	_ATFFFRHF_					0	0	0			REV__ENST00000565662.5_1_16:58035387-58051252:+|nuORF	REV__ENST00000565662.5_1_16:58035387-58051252:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	357.9488220214844	3	358.183622	1071.52904	-0.15528	-5.5618E-05	0.22619	8.1019E-05	0.070916	2.5401E-05	358.1835762934795	23.327	0.51047	23.327	23.125	23.635	0					20	9	3	0	0	0	0.95423	1	6458	6458		13.906	6.2971	1	7236900	+		4115	17244	2715	2757	4038	4038					-0.0038678528314903815
ATFLIRHRF	9	Unmodified	_ATFLIRHRF_					0	0	0		nc|ENSG00000214517|Q9Y570-2|PPME1;ENSG00000214517|ENST00000328257|PPME1;ENST00000538501.5_1_11:73950145-73964552:+|nuORF;nc|ENSG00000214517|Q9Y570-4|PPME1;ENST00000541340.5_1_11:73962668-73964552:+|nuORF;ENST00000539021.1_1_11:73961967-73964552:+|nuORF	nc|ENSG00000214517|Q9Y570-2|PPME1	nc|ENSG00000214517|Q9Y570-2|PPME1	MULTI-SECPEP	A375_MHC_IP_R1	1	388.2957763671875	3	387.561092	1159.66145	-0.072469	-2.8086E-05	0.54407	0.00021086	0.4716	0.00018277	387.8957479308735	41.257	0.45751	41.257	41.063	41.521	0					16	8	3	0	0	0	0.50702	1	14262	14262		23.79	15.844	1	2977800			4116	9619	2716	2758	4039	4039					0.08800239453648828
ATFLIRHRF	9	Unmodified	_ATFLIRHRF_					0	0	0		nc|ENSG00000214517|Q9Y570-2|PPME1;ENSG00000214517|ENST00000328257|PPME1;ENST00000538501.5_1_11:73950145-73964552:+|nuORF;nc|ENSG00000214517|Q9Y570-4|PPME1;ENST00000541340.5_1_11:73962668-73964552:+|nuORF;ENST00000539021.1_1_11:73961967-73964552:+|nuORF	nc|ENSG00000214517|Q9Y570-2|PPME1	nc|ENSG00000214517|Q9Y570-2|PPME1	MULTI-SECPEP	A375_MHC_IP_R2	2	387.9610595703125	3	387.561092	1159.66145	-0.19734	-7.6481E-05	0.26789	0.00010382	0.070547	2.7341E-05	387.56109291593935	40.166	0.55738	40.94	40.575	41.133	0.77451					23	10	3	0	0	0	0.3213	1	14886	14886		34.932	24.133	1	3403600			4117	9619	2716	2758	4040	4040					0.08800239453648828
ATFPDPNVKY	10	Unmodified	_ATFPDPNVKY_					0	0	0		ENSG00000158773|ENST00000368021|USF1;ENST00000529476.1_1_1:161011414-161013065:-|nuORF;USF1|p.A137*|1|0.15|ENSG00000158773|chr1:161041715-161041716|-/AG|frameshift_variant;ENST00000491629.5_1_1:161011414-161013065:-|nuORF	ENSG00000158773|ENST00000368021|USF1	ENSG00000158773|ENST00000368021|USF1	MULTI-MSMS	A375_MHC_IP_R1	1	576.6900634765625	2	576.290214	1150.56587	-0.23062	-0.0001329	0.27891	0.00016073	0.048291	2.783E-05	576.2902796262828	58.404	0.91393	58.404	57.822	58.736	0					51	17	4	0	0	0	0.011381	1	20942	20942		121.35	77.573	1	24032000			4118	6328	2717	2759	4041	4041					-0.0033857824791994062
ATFPDTLTY	9	Unmodified	_ATFPDTLTY_					0	0	0		nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6	nc|ENSG00000091409|P23229-4|ITGA6	nc|ENSG00000091409|P23229-4|ITGA6	MULTI-MSMS	A375_MHC_IP_R2	2	1030.37451171875	1	1028.4935	1027.48623	0.23819	0.00024497	-0.8645	-0.00088913	-0.62631	-0.00064416	1028.4929012238745	94.229	0.86002	94.974	94.515	95.375	0.74474					38	16	3	0	0	0	0.4867	1	35875	35875		20.454	7.581	1	9629800			4119	14499	2718	2760	4042	4042					-0.02641644921891384
ATFPREPC	8	Unmodified	_ATFPREPC_					0	0	0			REV__ENSG00000183479|ENST00000370231|TREX2	REV__ENSG00000183479|ENST00000370231|TREX2	MULTI-SECPEP	A375_MHC_IP_R1	1	921.1686401367188	1	920.429464	919.422187	0.3136	0.00028865	0.01046	9.628E-06	0.32406	0.00029828	920.4311666925487	115.41	1.7256	115.41	114.46	116.19	0					70	33	3	0	0	0	0.972	1	42435	42435		2.5775	1.976	1	14990000	+		4120	21758	2719	2761	4043	4043					-0.04074703559842874
ATFPREPC	8	Unmodified	_ATFPREPC_					0	0	0			REV__ENSG00000183479|ENST00000370231|TREX2	REV__ENSG00000183479|ENST00000370231|TREX2	MULTI-MATCH	A375_MHC_IP_R2	2		1	920.429464	919.422187	-0.1341	-0.00012343	0.49339	0.00045413	0.35929	0.0003307	920.4309808471937	115.06	1.7301	115.75	114.81	116.54	0.68999	0.17345	0.00022259	NaN	2.5775	56	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19105000	+		4121	21758	2719	2761							-0.04074703559842874
ATFQFRTRW	9	Unmodified	_ATFQFRTRW_					0	0	0		nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT	MULTI-MSMS	A375_MHC_IP_R1	1	405.2805480957031	3	404.880602	1211.61998	-0.46236	-0.0001872	0.52904	0.0002142	0.066678	2.6997E-05	404.88081507094324	60.958	0.40653	60.958	60.821	61.227	0					20	7	3	0	0	0	0.33243	1	21982	21982		28.234	16.059	1	2552000			4122	3874	2720	2762	4044	4044					0.022630586943023445
ATFQFRTRW	9	Unmodified	_ATFQFRTRW_					0	0	0		nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT	MULTI-SECPEP	A375_MHC_IP_R1	1	405.29132080078125	3	404.880602	1211.61998	-0.57932	-0.00023455	-2.4236	-0.00098128	-3.0029	-0.0012158	404.8794397198201	19.457	0.45714	19.457	19.268	19.725	0					14	8	2	0	0	0	0.75842	1	4830	4830		8.7454	2.115	1	2313400			4123	3874	2720	2762	4045	4045					0.022630586943023445
ATFQFRTRW	9	Unmodified	_ATFQFRTRW_					0	0	0		nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT	MULTI-MSMS	A375_MHC_IP_R2	2	404.9206848144531	3	404.880602	1211.61998	-0.30863	-0.00012496	0.01814	7.3443E-06	-0.29049	-0.00011761	404.88055113636204	60.199	0.61001	60.945	60.603	61.213	0.74653					23	11	3	0	0	0	0.58268	1	22757	22757		15.739	7.2943	1	2084600			4124	3874	2720	2762	4046	4046					0.022630586943023445
ATFWFCSW	8	Unmodified	_ATFWFCSW_					0	0	0		ENSG00000221855|ENST00000408916|TAS2R41	ENSG00000221855|ENST00000408916|TAS2R41	ENSG00000221855|ENST00000408916|TAS2R41	MSMS	A375_MHC_IP_R1	1	524.2305297851562	2	524.223288	1046.43202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.1	1	101.1	100.6	101.6	0								0	0	0	0.16876	1	37160	37160		5.7604	0.52976	1				4125	9667	2721	2763	4047	4047					-0.08933515554463156
ATGAEHCDC	9	Unmodified	_ATGAEHCDC_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-SECPEP	A375_MHC_IP_R2	2	906.6328125	1	906.308028	905.300751	-0.42305	-0.00038341	-0.091784	-8.3184E-05	-0.51483	-0.0004666	906.309268056435	129.86	1.1107	130.07	129.44	130.55	0.2142					29	21	2	0	0	0	0.76187	1	51096	51096		7.2892	4.9865	1	18989000	+		4126	18555	2722	2764	4048	4048					-0.15568693984675974
ATGEACSRTV	10	Unmodified	_ATGEACSRTV_					0	0	0			REV__ENSG00000154342|ENST00000284523|WNT3A	REV__ENSG00000154342|ENST00000284523|WNT3A	MULTI-MSMS	A375_MHC_IP_R2	2	498.1446838378906	2	497.734748	993.454944	-0.65361	-0.00032532	-2.665	-0.0013265	-3.3186	-0.0016518	497.7328978694631	62.234	0.55832	62.976	62.724	63.282	0.74263					13	10	2	0	0	0	0.69306	1	23501	23501		13.906	0.39817	1	578840	+		4127	19880	2723	2765	4049	4049					-0.04204541227647951
ATGENLPRV	9	Unmodified	_ATGENLPRV_					0	0	0		nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-5|API5	nc|ENSG00000166181|Q9BZZ5-3|API5	nc|ENSG00000166181|Q9BZZ5-3|API5	MULTI-SECPEP	A375_MHC_IP_R1	1	479.1614685058594	2	478.761623	955.508694	-0.52676	-0.00025219	0.081375	3.8959E-05	-0.44539	-0.00021324	478.76162192544496	36.245	0.55707	36.245	35.932	36.489	0					18	10	2	0	0	0	0.011405	1	12095	12095		122.18	55.723	1	3604600			4128	7037	2724	2766	4050	4050					0.029159992663721823
ATGENLPRV	9	Unmodified	_ATGENLPRV_					0	0	0		nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-5|API5	nc|ENSG00000166181|Q9BZZ5-3|API5	nc|ENSG00000166181|Q9BZZ5-3|API5	MULTI-SECPEP	A375_MHC_IP_R2	2	479.1612548828125	2	478.761623	955.508694	-0.78202	-0.0003744	-0.10018	-4.7963E-05	-0.88221	-0.00042237	478.7615599078558	35.411	0.65874	36.174	35.878	36.537	0.76338					24	12	3	0	0	0	0.025235	1	12859	12859		96.111	46.178	1	3382100			4129	7037	2724	2766	4051	4051					0.029159992663721823
ATGGRGGH	8	Unmodified	_ATGGRGGH_					0	0	0			REV__ENST00000492773.5_1_3:183859720-183860594:+|nuORF	REV__ENST00000492773.5_1_3:183859720-183860594:+|nuORF	MSMS	A375_MHC_IP_R2	2	356.6402587890625	2	356.677894	711.341235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.748	1	30.447	29.947	30.947	0.69872								0	0	0	0.16876	1	10412	10412		2.5775	0	1		+		4130	25413	2725	2767	4052	4052					-0.02598223487711948
ATGGRIVPRF	10	Unmodified	_ATGGRIVPRF_					0	0	0		ENST00000423695.6_1_5:10250480-10261980:+|nuORF;nc|ENSG00000150753|P48643-2|CCT5;ENSG00000150753|ENST00000280326|CCT5	ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENST00000423695.6_1_5:10250480-10261980:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	358.9452819824219	3	358.545331	1072.61416	-0.074086	-2.6563E-05	-0.033318	-1.1946E-05	-0.1074	-3.8509E-05	358.54540073908083	39.942	0.61081	39.942	39.744	40.355	0					15	11	2	0	0	0	0.50967	1	13720	13720		23.801	15.357	1	3159100			4131	11762	2726	2768	4053	4053					0.08075960182645758
ATGGRIVPRF	10	Unmodified	_ATGGRIVPRF_					0	0	0		ENST00000423695.6_1_5:10250480-10261980:+|nuORF;nc|ENSG00000150753|P48643-2|CCT5;ENSG00000150753|ENST00000280326|CCT5	ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENST00000423695.6_1_5:10250480-10261980:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	358.545331	1072.61416	-0.40656	-0.00014577	-0.16649	-5.9693E-05	-0.57305	-0.00020546	358.5452063851691	39.011	0.76337	39.786	39.556	40.32	0.77451	-0.078085	-5.2136E-05	NaN	23.801	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3215700			4132	11762	2726	2768							0.08075960182645758
ATGHQQTLLVP	11	Unmodified	_ATGHQQTLLVP_					0	0	0		nc|ENSG00000156535|Q6YHK3-2|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	MULTI-MSMS	A375_MHC_IP_R2	2	583.22216796875	2	582.822212	1163.62987	-0.39867	-0.00023236	-0.069549	-4.0535E-05	-0.46822	-0.00027289	582.8221702164983	31.98	0.30241	32.717	32.555	32.857	0.73691					10	5	2	0	0	0	0.70919	1	11381	11381		18.373	0.93045	1	1932300			4133	6199	2727	2769	4054	4054					0.054602019090452814
ATGINKDF	8	Unmodified	_ATGINKDF_					0	0	0			REV__tr|U7T258|U7T258_FUSNUCyclically-permutedmutarotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00557PE=4SV=1	REV__tr|U7T258|U7T258_FUSNUCyclically-permutedmutarotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00557PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	433.653076171875	2	433.224342	864.434132	0.059461	2.576E-05	-2.7802	-0.0012045	-2.7207	-0.0011787	433.2222219917093	35.687	0.20525	35.687	35.573	35.778	0					7	3	3	0	0	0	0.97144	1	11892	11892		2.3027	0	1	289560	+		4134	28722	2728	2770	4055	4055					-0.0035076354499778972
ATGIPVTTW	9	Unmodified	_ATGIPVTTW_					0	0	0		ENSG00000101311|ENST00000217289|FERMT1;FERMT1|p.D594N|1|0.45|ENSG00000101311|chr20:6079516-6079516|C/T|missense_variant;nc|ENSG00000101311|Q9BQL6-3|FERMT1	ENSG00000101311|ENST00000217289|FERMT1	ENSG00000101311|ENST00000217289|FERMT1	MULTI-MSMS	A375_MHC_IP_R1	1	945.5449829101562	1	945.504009	944.496732	-0.1088	-0.00010287	-0.19902	-0.00018817	-0.30782	-0.00029104	945.5034745615274	95.145	0.45866	95.145	94.853	95.312	0					15	8	2	0	0	0	0.29981	1	35007	35007		30.637	10.183	1	1914900			4135	2281	2729	2771	4056	4056					0.02226382523178927
ATGIPVTTW	9	Unmodified	_ATGIPVTTW_					0	0	0		ENSG00000101311|ENST00000217289|FERMT1;FERMT1|p.D594N|1|0.45|ENSG00000101311|chr20:6079516-6079516|C/T|missense_variant;nc|ENSG00000101311|Q9BQL6-3|FERMT1	ENSG00000101311|ENST00000217289|FERMT1	ENSG00000101311|ENST00000217289|FERMT1	MULTI-MATCH	A375_MHC_IP_R2	2		1	945.504009	944.496732	0.022362	2.1143E-05	-0.16324	-0.00015434	-0.14087	-0.0001332	945.5037742073538	94.403	0.50629	95.147	94.818	95.324	0.74474	0.0011045	8.0935E-06	NaN	30.637	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2304300			4136	2281	2729	2771							0.02226382523178927
ATGIQKRSLQ	10	Unmodified	_ATGIQKRSLQ_					0	0	0			REV__ENST00000225805.8_2_17:30668279-30669045:-|nuORF	REV__ENST00000225805.8_2_17:30668279-30669045:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	367.96441650390625	3	367.884012	1100.63021	0.022224	8.1757E-06	2.128	0.00078285	2.1502	0.00079102	367.885376265779	24.017	0.45657	24.017	23.635	24.092	0					11	8	2	0	0	0	0.92227	1	6652	6652		7.9454	3.2295	1	3709000	+		4137	23060	2730	2772	4057	4057					0.08391621628902612
ATGLLYIIET	10	Unmodified	_ATGLLYIIET_					0	0	0		nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	MULTI-SECPEP	A375_MHC_IP_R2	2	547.1890869140625	2	547.310615	1092.60668	-0.72565	-0.00039716	1.1789	0.0006452	0.4532	0.00024804	547.3112689699142	63.625	0.50813	64.366	64.191	64.699	0.74022					19	9	3	0	0	0	0.70528	1	24243	24243		26.268	17.523	1	1842800			4138	14849	2731	2773	4058	4058					0.06407763071729278
ATGLLYIIET	10	Unmodified	_ATGLLYIIET_					0	0	0		nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	MULTI-MATCH	A375_MHC_IP_R1	1		2	547.310615	1092.60668	-0.59364	-0.00032491	2.1184	0.0011594	1.5247	0.0008345	547.3118721173956	64.733	0.45875	64.733	64.444	64.903	0	0.18352	0.00030396	NaN	26.268	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1951100			4139	14849	2731	2773							0.06407763071729278
ATGPELKDGI	10	Unmodified	_ATGPELKDGI_					0	0	0		ENST00000405737.2_2_13:41635295-41635541:-|nuORF	ENST00000405737.2_2_13:41635295-41635541:-|nuORF	ENST00000405737.2_2_13:41635295-41635541:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	501.16925048828125	2	500.769114	999.523675	-0.72546	-0.00036329	1.2223	0.00061208	0.49682	0.00024879	500.7696707067788	48.997	0.51034	49.755	49.434	49.944	0.75737					14	9	2	0	0	0	0.52785	1	18405	18405		26.268	3.5319	1	1739700			4140	11594	2732	2774	4059	4059					0.023894463437159175
ATGPPKHAPG	10	Unmodified	_ATGPPKHAPG_					0	0	0		ENSG00000167178|ENST00000453268|ISLR2	ENSG00000167178|ENST00000453268|ISLR2	ENSG00000167178|ENST00000453268|ISLR2	MULTI-SECPEP	A375_MHC_IP_R2	2	467.150634765625	2	466.751059	931.487565	-1.0072	-0.00047012	0.38546	0.00017991	-0.62177	-0.00029021	466.7511477018763	53.956	0.71448	54.707	54.454	55.169	0.75105					16	13	2	0	0	0	0.58856	1	20387	20387		34.932	4.2955	1	2483700			4141	7164	2733	2775	4060	4060					0.019080339575111793
ATGPRLARHW	10	Unmodified	_ATGPRLARHW_					0	0	0			REV__ENSG00000178971|ENST00000651323|CTC1	REV__ENSG00000178971|ENST00000651323|CTC1	MULTI-SECPEP	A375_MHC_IP_R1	1	582.6555786132812	2	582.822881	1163.63121	-0.40516	-0.00023614	-1.0193	-0.00059405	-1.4244	-0.00083019	583.3237886488893	52.892	0.40552	52.892	52.643	53.048	0					12	7	2	0	0	0	0.88361	1	18833	18833		18.146	4.5315	1	1814400	+		4142	21530	2734	2776	4061	4061					0.05593880788455863
ATGPRLARHW	10	Unmodified	_ATGPRLARHW_					0	0	0			REV__ENSG00000178971|ENST00000651323|CTC1	REV__ENSG00000178971|ENST00000651323|CTC1	MULTI-SECPEP	A375_MHC_IP_R2	2	582.6559448242188	2	582.822881	1163.63121	-0.7859	-0.00045804	-1.6947	-0.00098769	-2.4806	-0.0014457	582.822279263824	52.253	0.35281	53.006	52.831	53.184	0.75225					9	6	2	0	0	0	0.91057	1	19666	19666		27.629	27.629	1	1051400	+		4143	21530	2734	2776	4062	4062					0.05593880788455863
ATGPSIKI	8	Unmodified	_ATGPSIKI_					0	0	0		ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-SECPEP	A375_MHC_IP_R1	1	394.139892578125	2	393.739628	785.464704	0.24974	9.8333E-05	0.31526	0.00012413	0.565	0.00022246	393.7396966068677	43.159	0.50871	43.159	42.942	43.451	0					13	9	2	0	0	0	0.55873	1	14999	14999		58.679	14.272	1	3792900			4144	9470	2735	2777	4063	4063					0.06339014840023083
ATGPSIKI	8	Unmodified	_ATGPSIKI_					0	0	0		ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-SECPEP	A375_MHC_IP_R2	2	394.1395568847656	2	393.739628	785.464704	-0.11178	-4.4011E-05	0.10604	4.1753E-05	-0.0057355	-2.2583E-06	393.73962415454815	42.308	0.51123	43.081	42.757	43.268	0.7724					17	9	3	0	0	0	0.68831	1	15731	15731		49.933	17.628	1	2606100			4145	9470	2735	2777	4064	4064					0.06339014840023083
ATGPSIKIW	9	Unmodified	_ATGPSIKIW_					0	0	0		ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-SECPEP	A375_MHC_IP_R1	1	487.1788024902344	2	486.779285	971.544017	-0.25111	-0.00012223	-0.1244	-6.0555E-05	-0.37551	-0.00018279	486.7791493025725	75.344	0.75447	75.344	75.06	75.815	0					28	14	3	0	0	0	0.16595	1	27433	27433		61.602	31.377	1	3532100			4146	9470	2736	2778	4065	4065					0.05710661794171301
ATGPSIKIW	9	Unmodified	_ATGPSIKIW_					0	0	0		ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-SECPEP	A375_MHC_IP_R2	2	487.1789855957031	2	486.779285	971.544017	-0.63728	-0.00031022	0.26266	0.00012786	-0.37463	-0.00018236	486.77930040370137	74.451	0.81401	75.189	74.807	75.621	0.73752					32	15	3	0	0	0	0.11849	1	28244	28244		70.332	30.375	1	5450300			4147	9470	2736	2778	4066	4066					0.05710661794171301
ATGRKIWHDP	10	Unmodified	_ATGRKIWHDP_					0	0	0			REV__ENSG00000183914|ENST00000572933|DNAH2	REV__ENSG00000183914|ENST00000572933|DNAH2	MULTI-SECPEP	A375_MHC_IP_R1	1	591.2132568359375	2	590.814722	1179.61489	-0.35196	-0.00020794	-1.4342	-0.00084733	-1.7861	-0.0010553	590.8140195170462	77.248	0.55588	77.248	77.032	77.588	0					23	10	3	0	0	0	0.90513	1	28213	28213		17.113	0	1	1402800	+		4148	21788	2737	2779	4067	4067					0.032267548316895045
ATHILKLERY	10	Unmodified	_ATHILKLERY_					0	0	0		ENST00000494065.2_1_22:32232959-32233274:+|nuORF	ENST00000494065.2_1_22:32232959-32233274:+|nuORF	ENST00000494065.2_1_22:32232959-32233274:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	415.8851318359375	3	415.243429	1242.70846	0.18138	7.5315E-05	0.23285	9.6687E-05	0.41422	0.000172	415.24340554503556	41.882	0.45753	41.882	41.725	42.183	0					17	8	3	0	0	0	0.72006	1	14450	14450		3.3196	1.5372	1	4077000			4149	12685	2738	2780	4068	4068					0.09681054214138385
ATHSPPTDLVW	11	Unmodified	_ATHSPPTDLVW_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156106882-156107552:+|nuORF	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-SECPEP	A375_MHC_IP_R1	1	612.7066040039062	2	612.306395	1222.59824	-0.20011	-0.00012253	-0.11521	-7.0545E-05	-0.31532	-0.00019307	612.3062435772492	72.559	0.91202	72.559	72.018	72.93	0					35	17	3	0	0	0	0.4173	1	26328	26328		51.63	36.792	1	6074300			4150	6442	2739	2781	4069	4069					-0.004157908449087699
ATHSPPTDLVW	11	Unmodified	_ATHSPPTDLVW_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156106882-156107552:+|nuORF	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-MSMS	A375_MHC_IP_R2	2	612.7059326171875	2	612.306395	1222.59824	-0.82569	-0.00050558	-0.12337	-7.5538E-05	-0.94906	-0.00058112	612.3062033627505	71.762	0.91007	72.496	72.061	72.971	0.73421					37	17	3	0	0	0	0.33856	1	27169	27169		43.772	21.036	1	7466300			4151	6442	2739	2781	4070	4070					-0.004157908449087699
ATHSSRFIPLK	11	Unmodified	_ATHSSRFIPLK_					0	0	0		ENSG00000115268|ENST00000592588|RPS15;ENST00000586096.3_1_19:1440314-1440458:+|nuORF	ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	MULTI-MSMS	A375_MHC_IP_R1	1	419.97491455078125	3	419.575178	1255.70371	-0.011963	-5.0193E-06	-0.39582	-0.00016608	-0.40778	-0.00017109	419.5750018819872	27.229	0.60617	27.229	26.978	27.584	0					24	11	3	0	0	0	0.0003796	1	8201	8201		87.442	65.334	1	7575800			4152	3291	2740	2782	4071	4071					0.08608170071374843
ATHSSRFIPLK	11	Unmodified	_ATHSSRFIPLK_					0	0	0		ENSG00000115268|ENST00000592588|RPS15;ENST00000586096.3_1_19:1440314-1440458:+|nuORF	ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	MULTI-MSMS	A375_MHC_IP_R2	2	419.9748229980469	3	419.575178	1255.70371	-0.46705	-0.00019596	0.014318	6.0076E-06	-0.45273	-0.00018995	419.57511825906687	26.358	0.71212	27.018	26.805	27.517	0.65992					29	13	3	0	0	0	0.065406	1	8910	8910		58.398	44.228	1	5966800			4153	3291	2740	2782	4072	4072					0.08608170071374843
ATHTREHRQ	9	Unmodified	_ATHTREHRQ_					0	0	0			REV__ENSG00000180855|ENST00000301547|ZNF443	REV__ENSG00000180855|ENST00000301547|ZNF443	MULTI-SECPEP	A375_MHC_IP_R2	2	379.95697021484375	3	379.19536	1134.56425	-0.31264	-0.00011855	-0.10656	-4.0408E-05	-0.41921	-0.00015896	379.19542450370983	33.431	0.65994	34.183	33.84	34.5	0.75225					18	12	2	0	0	0	0.78798	1	11918	11918		0.86438	0	1	1044100	+		4154	21624	2741	2783	4073	4073					0.0023522550670804776
ATIEELRERVW	11	Unmodified	_ATIEELRERVW_					0	0	0		ENSG00000147854|ENST00000276893|UHRF2;ENST00000469298.5_1_9:6413336-6434174:+|nuORF;nc|ENSG00000147854|Q96PU4-2|UHRF2	ENSG00000147854|ENST00000276893|UHRF2	ENSG00000147854|ENST00000276893|UHRF2	MULTI-MSMS	A375_MHC_IP_R1	1	468.3208312988281	3	467.921014	1400.74121	0.061465	2.8761E-05	-0.083914	-3.9265E-05	-0.022449	-1.0504E-05	467.9208687680953	69.876	0.45341	69.876	69.681	70.135	0					19	8	3	0	0	0	0.5997	1	25376	25376		23.34	18.624	1	2756100			4155	5709	2742	2784	4074	4074					0.05687216546311902
ATIEELRERVW	11	Unmodified	_ATIEELRERVW_					0	0	0		ENSG00000147854|ENST00000276893|UHRF2;ENST00000469298.5_1_9:6413336-6434174:+|nuORF;nc|ENSG00000147854|Q96PU4-2|UHRF2	ENSG00000147854|ENST00000276893|UHRF2	ENSG00000147854|ENST00000276893|UHRF2	MULTI-MSMS	A375_MHC_IP_R2	2	468.32037353515625	3	467.921014	1400.74121	-0.52778	-0.00024696	-0.15391	-7.2017E-05	-0.68169	-0.00031898	468.2552400574657	69.223	0.40464	69.958	69.779	70.184	0.7351					17	7	3	0	0	0	0.56388	1	26242	26242		26.121	21.715	1	2062100			4156	5709	2742	2784	4075	4075					0.05687216546311902
ATIEIPNFNW	10	Unmodified	_ATIEIPNFNW_					0	0	0		ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	MULTI-MSMS	A375_MHC_IP_R1	1	603.202880859375	2	602.803488	1203.59242	-0.54876	-0.0003308	-0.13118	-7.9076E-05	-0.67994	-0.00040987	602.8032130801768	129.52	0.30464	129.52	129.3	129.6	0					8	5	2	0	0	0	0.36703	1	49847	49847		36.127	13.391	1	8465200			4157	10016	2743	2785	4076	4076					-0.0012288935658943956
ATIGELAQV	9	Unmodified	_ATIGELAQV_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	A375_MHC_IP_R1	1	451.6531677246094	2	451.2531	900.491647	-0.20044	-9.0447E-05	0.39501	0.00017825	0.19458	8.7804E-05	451.25323871956687	79.853	0.61329	79.853	79.574	80.187	0					28	11	3	0	0	0	0.0098409	1	29149	29149		115.69	7.695	1	8610200			4158	9326	2744	2786	4077	4077					0.03742078660570769
ATIGELAQV	9	Unmodified	_ATIGELAQV_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	A375_MHC_IP_R1	1	901.4723510742188	1	901.498923	900.491647	-0.20174	-0.00018187	0.338	0.00030471	0.13626	0.00012284	901.4991060586625	79.853	0.61329	79.853	79.574	80.187	0					27	11	3	0	0	0	0.0017027	1	29227	29227		147.06	26.609	1	14421000			4159	9326	2744	2786	4078	4078					0.03742078660570769
ATIGELAQV	9	Unmodified	_ATIGELAQV_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	A375_MHC_IP_R2	2	451.6527404785156	2	451.2531	900.491647	-0.17883	-8.0696E-05	-0.17792	-8.0285E-05	-0.35674	-0.00016098	451.25297918482437	79.16	0.709	79.905	79.54	80.249	0.74473					31	13	3	0	0	0	0.009271	1	29996	29996		103.75	7.4635	1	8865400			4160	9326	2744	2786	4079	4079					0.03742078660570769
ATIGELAQV	9	Unmodified	_ATIGELAQV_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MATCH	A375_MHC_IP_R2	2		1	901.498923	900.491647	-0.32187	-0.00029016	-0.25557	-0.00023039	-0.57744	-0.00052056	901.4985923357258	79.141	0.55785	79.886	79.591	80.149	0.74473	0.016542	-0.00018176	NaN	147.06	26	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14678000			4161	9326	2744	2786							0.03742078660570769
ATIHRTMGKI	10	Unmodified	_ATIHRTMGKI_					0	0	0			REV__ENST00000539300.5_1_12:10561570-10562035:-|nuORF	REV__ENST00000539300.5_1_12:10561570-10562035:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1127.034912109375	1	1127.63537	1126.6281	0.061127	6.8929E-05	-0.56445	-0.0006365	-0.50333	-0.00056757	1128.6359834482535	107.33	0.50754	108.09	107.79	108.3	0.75436					11	9	2	0	0	0	0.91556	1	40459	40459		6.2058	0.9089	1	3855300	+		4162	25941	2745	2787	4080	4080					0.0698486961944127
ATIKDIREHEW	11	Unmodified	_ATIKDIREHEW_					0	0	0		ENSG00000132356|ENST00000397128|PRKAA1;nc|ENSG00000132356|Q13131-2|PRKAA1;ENSG00000162409|ENST00000371244|PRKAA2	ENSG00000132356|ENST00000397128|PRKAA1;ENSG00000162409|ENST00000371244|PRKAA2	ENSG00000132356|ENST00000397128|PRKAA1	MULTI-SECPEP	A375_MHC_IP_R1	1	466.9772033691406	3	466.577247	1396.70991	-0.55548	-0.00025917	-0.008117	-3.7872E-06	-0.5636	-0.00026296	466.57725698885986	36.72	0.50676	36.72	36.439	36.945	0					22	9	3	0	0	0	0.16379	1	12296	12296		66.84	52.002	1	14522000			4163	4396;6529	2746	2788	4081	4081					0.027426435122151815
ATIKDIREHEW	11	Unmodified	_ATIKDIREHEW_					0	0	0		ENSG00000132356|ENST00000397128|PRKAA1;nc|ENSG00000132356|Q13131-2|PRKAA1;ENSG00000162409|ENST00000371244|PRKAA2	ENSG00000132356|ENST00000397128|PRKAA1;ENSG00000162409|ENST00000371244|PRKAA2	ENSG00000132356|ENST00000397128|PRKAA1	MULTI-SECPEP	A375_MHC_IP_R2	2	467.3113708496094	3	466.577247	1396.70991	-0.80085	-0.00037366	0.29021	0.00013541	-0.51064	-0.00023825	466.57737955314644	35.864	0.61341	36.628	36.384	36.997	0.76338					26	11	3	0	0	0	0.060079	1	13009	13009		66.84	55.775	1	14762000			4164	4396;6529	2746	2788	4082	4082					0.027426435122151815
ATIPNARQF	9	Unmodified	_ATIPNARQF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-SECPEP	A375_MHC_IP_R1	1	509.67694091796875	2	509.277441	1016.54033	-0.25878	-0.00013179	-2.5726	-0.0013102	-2.8314	-0.001442	509.2770581742445	42.596	1.1151	42.596	42.082	43.197	0					66	21	5	0	0	0	0.05021	1	14740	14740		69.105	32.978	1	41390000			4165	1156	2747	2789	4083	4083					0.03271992020336256
ATIPNARQF	9	Unmodified	_ATIPNARQF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	A375_MHC_IP_R2	2	510.2012634277344	2	509.277441	1016.54033	-0.73516	-0.0003744	-2.3819	-0.0012131	-3.1171	-0.0015875	509.2771544171825	41.903	1.1721	42.678	42.098	43.27	0.77451					85	22	5	0	0	0	0.22528	1	15560	15560		36.127	3.8215	1	53667000			4166	1156	2747	2789	4084	4084					0.03271992020336256
ATIPYHPSL	9	Unmodified	_ATIPYHPSL_					0	0	0		nc|ENSG00000090097|P57723-2|PCBP4;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000492809.5_1_3:51992079-51994784:-|nuORF	nc|ENSG00000090097|P57723-2|PCBP4	nc|ENSG00000090097|P57723-2|PCBP4	MULTI-SECPEP	A375_MHC_IP_R1	1	500.168701171875	2	499.768917	997.523281	-0.41233	-0.00020607	0.10778	5.3866E-05	-0.30455	-0.0001522	499.76892791788816	59.067	0.86548	59.067	58.836	59.701	0					27	16	2	0	0	0	0.3213	1	21240	21240		30.637	10.183	1	5159300			4167	1945	2748	2790	4085	4085					0.024420714145321654
ATIPYHPSL	9	Unmodified	_ATIPYHPSL_					0	0	0		nc|ENSG00000090097|P57723-2|PCBP4;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000492809.5_1_3:51992079-51994784:-|nuORF	nc|ENSG00000090097|P57723-2|PCBP4	nc|ENSG00000090097|P57723-2|PCBP4	MULTI-MSMS	A375_MHC_IP_R2	2	499.68682861328125	2	499.768917	997.523281	-0.85409	-0.00042685	-0.00038668	-1.9325E-07	-0.85448	-0.00042704	499.7688754172049	58.291	0.71082	59.04	58.729	59.44	0.74894					24	13	2	0	0	0	0.29981	1	21995	21995		30.637	5.2372	1	5048600			4168	1945	2748	2790	4086	4086					0.024420714145321654
ATIQYDQIH	9	Unmodified	_ATIQYDQIH_					0	0	0			REV__EDIL3|p.S327L|1|0.35|ENSG00000164176|chr5:84060457-84060457|G/A|missense_variant	REV__EDIL3|p.S327L|1|0.35|ENSG00000164176|chr5:84060457-84060457|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	362.9689636230469	3	363.517218	1087.52982	-0.015901	-5.7801E-06	-1.1289	-0.00041039	-1.1448	-0.00041617	363.5168662275647	42.13	0.35812	42.902	42.707	43.065	0.7724					8	6	2	0	0	0	0.78348	1	15724	15724		4.897	1.31	1	683310	+		4169	16060	2749	2791	4087	4087					-0.010440354247748473
ATITKTEKW	9	Unmodified	_ATITKTEKW_					0	0	0		tr|U7SLR1|U7SLR1_FUSNUSmallribosomalsubunitproteinbS6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsFPE=3SV=1	tr|U7SLR1|U7SLR1_FUSNUSmallribosomalsubunitproteinbS6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsFPE=3SV=1	tr|U7SLR1|U7SLR1_FUSNUSmallribosomalsubunitproteinbS6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsFPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	539.1736450195312	2	539.300581	1076.58661	-0.77832	-0.00041975	-0.095811	-5.1671E-05	-0.87413	-0.00047142	539.3005959522369	41.93	0.30643	41.93	41.725	42.032	0					8	5	2	0	0	0	0.65246	1	14499	14499		21.747	6.9084	1	1400400			4170	29509	2750	2792	4088	4088					0.05138012131760661
ATKALGIGWPT	11	Unmodified	_ATKALGIGWPT_					0	0	0		nc|ENSG00000138002|Q9UG01-3|IFT172	nc|ENSG00000138002|Q9UG01-3|IFT172	nc|ENSG00000138002|Q9UG01-3|IFT172	MULTI-MSMS	A375_MHC_IP_R1	1	372.5967712402344	3	372.213358	1113.61824	0.21684	8.0712E-05	0.15258	5.6792E-05	0.36942	0.0001375	372.21330495693496	41.906	0.5597	41.906	41.674	42.233	0					25	10	4	0	0	0	0.73698	1	14614	14614		2.2527	0.34635	1	9817500			4171	14631	2751	2793	4089	4089					0.06598004885699993
ATKELERL	8	Unmodified	_ATKELERL_					0	0	0			REV__ENST00000484819.1_1_1:154241897-154242149:+|nuORF	REV__ENST00000484819.1_1_1:154241897-154242149:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	480.67962646484375	2	480.279649	958.544745	-0.43649	-0.00020964	0.21111	0.00010139	-0.22538	-0.00010825	480.27976559425645	57.949	0.35529	57.949	57.771	58.126	0					9	6	2	0	0	0	0.91117	1	20842	20842		16.149	0	1	1400200	+		4172	25305	2752	2794	4090	4090					0.06381456443239131
ATKFAMPCF	9	Unmodified	_ATKFAMPCF_					0	0	0			REV__ENSG00000166716|ENST00000560079|ZNF592	REV__ENSG00000166716|ENST00000560079|ZNF592	MULTI-SECPEP	A375_MHC_IP_R1	1	1015.5724487304688	1	1015.47397	1014.46669	0.51518	0.00052316	-0.71526	-0.00072633	-0.20007	-0.00020317	1015.4736038435706	116.15	0.60973	116.15	115.94	116.55	0					15	11	2	0	0	0	0.74412	1	42730	42730		6.2058	1.4498	1	9010900	+		4173	20696	2753	2795	4091	4091					-0.03996015738005099
ATKFIKEGVS	10	Unmodified	_ATKFIKEGVS_					0	0	0			REV__ENSG00000133661|ENST00000372292|SFTPD	REV__ENSG00000133661|ENST00000372292|SFTPD	MSMS	A375_MHC_IP_R1	1	360.60791015625	3	360.541363	1078.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.656	1	40.656	40.156	41.156	0								0	0	0	0.15181	1	13986	13986		9.2438	0	1		+		4174	18727	2754	2796	4092	4092					0.0661029864882039
ATKIEKELF	9	Unmodified	_ATKIEKELF_					0	0	0		PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant;nc|ENSG00000118482|Q92576-2|PHF3;ENSG00000118482|ENST00000262043|PHF3	PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant	PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	360.6091613769531	3	360.209613	1077.60701	-0.27437	-9.8831E-05	-0.11007	-3.9649E-05	-0.38444	-0.00013848	360.20917619716244	40.311	0.81252	41.086	40.828	41.641	0.77451					32	15	3	0	0	0	0.048303	1	14941	14941		60.899	35.942	1	3300000			4175	3542	2755	2797	4093	4093					0.0713118279156788
ATKIRNLPC	9	Unmodified	_ATKIRNLPC_					0	0	0		ENST00000420967.5_1_12:118454632-118456902:+|nuORF	ENST00000420967.5_1_12:118454632-118456902:+|nuORF	ENST00000420967.5_1_12:118454632-118456902:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1015.6727905273438	1	1015.57171	1014.56443	0.087389	8.875E-05	0.13512	0.00013722	0.22251	0.00022597	1015.5723389180018	104.92	0.50832	105.68	105.46	105.97	0.76308					12	9	2	0	0	0	0.38603	1	39711	39711		25.399	13.759	1	2801300			4176	11733	2756	2798	4094	4094					0.057735091823246876
ATKKEITFF	9	Unmodified	_ATKKEITFF_					0	0	0		ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF	ENSG00000183486|ENST00000330714|MX2	ENSG00000183486|ENST00000330714|MX2	MULTI-SECPEP	A375_MHC_IP_R1	1	543.2048950195312	2	542.8055	1083.59645	-0.43915	-0.00023837	-0.22046	-0.00011967	-0.65961	-0.00035804	542.8052883502546	49.923	0.61293	49.923	49.642	50.254	0					35	11	4	0	0	0	0.27114	1	17637	17637		53.404	29.383	1	13513000			4177	8498	2757	2799	4095	4095					0.05799200137153093
ATKKEITFF	9	Unmodified	_ATKKEITFF_					0	0	0		ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF	ENSG00000183486|ENST00000330714|MX2	ENSG00000183486|ENST00000330714|MX2	MULTI-MSMS	A375_MHC_IP_R2	2	362.46771240234375	3	362.206092	1083.59645	-0.27873	-0.00010096	0.065718	2.3804E-05	-0.21302	-7.7155E-05	362.20602065246106	48.886	0.91386	49.644	49.282	50.196	0.75737					46	17	4	0	0	0	0.58268	1	18413	18413		15.739	5.5881	1	17420000			4178	8498	2757	2799	4096	4096					0.05799200137153093
ATKKEITFF	9	Unmodified	_ATKKEITFF_					0	0	0		ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF	ENSG00000183486|ENST00000330714|MX2	ENSG00000183486|ENST00000330714|MX2	MULTI-SECPEP	A375_MHC_IP_R2	2	543.2049560546875	2	542.8055	1083.59645	-0.95532	-0.00051855	0.25071	0.00013608	-0.70461	-0.00038247	542.8055048086981	48.916	0.66279	49.674	49.332	49.995	0.75736					30	12	3	0	0	0	0.36673	1	18334	18334		32.037	15.095	1	12290000			4179	8498	2757	2799	4097	4097					0.05799200137153093
ATKKLIGEW	9	Unmodified	_ATKKLIGEW_					0	0	0		ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-SECPEP	A375_MHC_IP_R1	1	523.7054443359375	2	523.305667	1044.59678	-0.39717	-0.00020784	-0.53275	-0.00027879	-0.92992	-0.00048663	523.3053693286394	42.31	0.40479	42.31	42.082	42.487	0					13	7	2	0	0	0	0.31976	1	14665	14665		37.771	11.751	1	3323300			4180	2808	2758	2800	4098	4098					0.0762661985700106
ATKLHELL	8	Unmodified	_ATKLHELL_					0	0	0			REV__ENSG00000162408|ENST00000377705|NOL9	REV__ENSG00000162408|ENST00000377705|NOL9	MULTI-SECPEP	A375_MHC_IP_R2	2	923.8313598632812	1	924.551293	923.544017	-0.087723	-8.1105E-05	-0.01422	-1.3147E-05	-0.10194	-9.4252E-05	924.5507890415845	113.67	0.60217	114.38	114.18	114.78	0.70985					22	11	3	0	0	0	0.92636	1	42982	42982		16.942	6.1184	1	7576100	+		4181	20250	2759	2801	4099	4099					0.0791866179419003
ATKLHELL	8	Unmodified	_ATKLHELL_					0	0	0			REV__ENSG00000162408|ENST00000377705|NOL9	REV__ENSG00000162408|ENST00000377705|NOL9	MULTI-MATCH	A375_MHC_IP_R1	1		1	924.551293	923.544017	0.39866	0.00036858	0.51677	0.00047778	0.91543	0.00084636	924.5514852506799	114.6	0.60905	114.6	114.31	114.92	0	0.1134	0.00038746	NaN	16.942	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5148600	+		4182	20250	2759	2801							0.0791866179419003
ATKLKIDLDK	10	Unmodified	_ATKLKIDLDK_					0	0	0		tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	MSMS	A375_MHC_IP_R2	2	382.2873840332031	3	382.236051	1143.68632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.605	1	35.368	34.868	35.868	0.76338								0	0	0	0.15152	1	12499	12499		14.957	2.1012	1				4183	29999	2760	2802	4100	4100					0.12022829745706076
ATKLQKVKSV	10	Unmodified	_ATKLQKVKSV_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	A375_MHC_IP_R1	1	367.28192138671875	3	367.904524	1100.69174	0.029174	1.0733E-05	0.69395	0.00025531	0.72313	0.00026604	367.90435893279135	39.744	0.71006	39.744	39.289	39.999	0					20	13	3	0	0	0	0.93578	1	13710	13710		5.7834	3.0482	1	1731600			4184	9666	2761	2803	4101	4101					0.1454255332816956
ATKQPGITF	9	Unmodified	_ATKQPGITF_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-SECPEP	A375_MHC_IP_R1	1	482.1688537597656	2	481.768917	961.523281	0.17624	8.4906E-05	-2.9958	-0.0014433	-2.8196	-0.0013584	481.768830743363	44.954	0.60732	44.954	44.727	45.334	0					18	11	2	0	0	0	0.10495	1	15737	15737		65.474	25.516	1	3560900			4185	3520	2762	2804	4102	4102					0.040980714145121055
ATKQPGITF	9	Unmodified	_ATKQPGITF_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-SECPEP	A375_MHC_IP_R2	2	482.1687316894531	2	481.768917	961.523281	-0.4948	-0.00023838	-2.6456	-0.0012746	-3.1404	-0.001513	481.7689296488524	44.436	1.1694	45.205	44.631	45.8	0.7691					32	22	2	0	0	0	0.16595	1	16477	16477		53.404	17.277	1	3827300			4186	3520	2762	2804	4103	4103					0.040980714145121055
ATKSEEKIQI	10	Unmodified	_ATKSEEKIQI_					0	0	0			REV__ENSG00000117724|ENST00000366955|CENPF	REV__ENSG00000117724|ENST00000366955|CENPF	MSMS	A375_MHC_IP_R1	1	382.931396484375	3	382.883677	1145.6292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.128	1	23.128	22.628	23.628	0								0	0	0	0.14953	1	6298	6298		18.721	5.8486	1		+		4187	18020	2763	2805	4104	4104					0.062213624693413294
ATKTFVDFF	9	Unmodified	_ATKTFVDFF_					0	0	0		ENST00000533802.5_2_11:43855633-43876795:+|nuORF;ENST00000533090.6_2_11:43852474-43876795:+|nuORF;ENSG00000149084|ENST00000278353|HSD17B12	ENST00000533802.5_2_11:43855633-43876795:+|nuORF	ENST00000533802.5_2_11:43855633-43876795:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	538.6759643554688	2	538.276575	1074.5386	-0.64707	-0.0003483	2.9586	0.0015926	2.3116	0.0012443	538.2787148672658	104.23	1.0181	104.23	103.72	104.74	0					24	19	2	0	0	0	0.068433	1	38216	38216		61.602	25.136	1	2088600			4188	5780	2764	2806	4105	4105					0.004309382117071436
ATLAKPTVPQ	10	Unmodified	_ATLAKPTVPQ_					0	0	0			REV__ENST00000482926.1_1_6:42018279-42030992:+|nuORF	REV__ENST00000482926.1_1_6:42018279-42030992:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	513.7030639648438	2	513.303124	1024.5917	-0.59449	-0.00030515	0.33503	0.00017197	-0.25946	-0.00013318	513.3033365799671	100.71	0.51369	101.47	101.19	101.7	0.76278					17	9	2	0	0	0	0.51493	1	38203	38203		38.176	15.439	1	2310800	+		4189	19004	2765	2807	4106	4106					0.0803831599437217
ATLCINPSYL	10	Unmodified	_ATLCINPSYL_					0	0	0			REV__ENST00000609439.2_2_7:45847154-45848297:+|nuORF	REV__ENST00000609439.2_2_7:45847154-45848297:+|nuORF	MSMS	A375_MHC_IP_R1	1	365.6003112792969	3	365.523204	1093.54778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.938	1	33.938	33.438	34.438	0								0	0	0	0.15332	1	11131	11131		5.7834	0.48655	1		+		4190	26568	2766	2808	4107	4107					0.004749635057123669
ATLEVSVERHL	11	Unmodified	_ATLEVSVERHL_					0	0	0			REV__ENST00000524819.5_1_11:62529062-62529592:+|nuORF	REV__ENST00000524819.5_1_11:62529062-62529592:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	418.9662170410156	3	418.56646	1252.67755	0.11597	4.854E-05	0.018192	7.6144E-06	0.13416	5.6155E-05	418.56639937898586	34.583	0.50711	34.583	34.303	34.81	0					30	9	4	0	0	0	0.68343	2	11380	11358;11380		16.838	5.207	1	26204000	+		4191	25760	2767	2809	4108;4109	4109					0.06131856109254841
ATLEVSVERHL	11	Unmodified	_ATLEVSVERHL_					0	0	0			REV__ENST00000524819.5_1_11:62529062-62529592:+|nuORF	REV__ENST00000524819.5_1_11:62529062-62529592:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	419.6504211425781	3	418.56646	1252.67755	-0.59258	-0.00024803	0.26019	0.00010891	-0.33239	-0.00013913	418.5665364568141	33.709	0.60732	34.461	34.146	34.753	0.75225					38	11	4	0	0	0	0.73154	1	12099	12099		7.4291	7.4291	1	25922000	+		4192	25760	2767	2809	4110	4110					0.06131856109254841
ATLKNPILW	9	Unmodified	_ATLKNPILW_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-MSMS	A375_MHC_IP_R1	1	528.7157592773438	2	528.316035	1054.61752	-0.49495	-0.00026149	0.13692	7.2336E-05	-0.35804	-0.00018916	528.3160362071433	88.071	1.2227	88.071	87.644	88.867	0					65	23	5	0	0	0	0.12771	1	32467	32467		45.7	5.7423	1	77202000			4193	3557	2768	2810	4111	4111					0.09239210236660256
ATLKNPILW	9	Unmodified	_ATLKNPILW_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-SECPEP	A375_MHC_IP_R2	2	528.7156982421875	2	528.316035	1054.61752	-0.41388	-0.00021866	-0.16813	-8.8828E-05	-0.58202	-0.00030749	528.3158287620105	87.105	1.2655	87.838	87.458	88.724	0.733					71	24	4	0	0	0	0.03109	1	33056	33056		103.35	49.778	1	81784000			4194	3557	2768	2810	4112	4112					0.09239210236660256
ATLKSLSSWKR	11	Unmodified	_ATLKSLSSWKR_					0	0	0			REV__ENST00000483035.5_1_6:118886676-118973579:-|nuORF	REV__ENST00000483035.5_1_6:118886676-118973579:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	639.271728515625	2	638.872237	1275.72992	-1.1156	-0.00071275	0.12532	8.0061E-05	-0.99033	-0.00063269	638.8722899793695	52.105	0.60968	52.857	52.574	53.184	0.75225					30	11	4	0	0	0	0.97182	1	19593	19593		13.615	2.1202	1	29305000	+		4195	17700	2769	2811	4113	4113					0.10308439242817258
ATLKTLLHY	9	Unmodified	_ATLKTLLHY_					0	0	0		tr|U7SRU5|U7SRU5_FUSNUPhosphoglyceratemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01433PE=4SV=1	tr|U7SRU5|U7SRU5_FUSNUPhosphoglyceratemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01433PE=4SV=1	tr|U7SRU5|U7SRU5_FUSNUPhosphoglyceratemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01433PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	530.7133178710938	2	530.313492	1058.61243	-0.54336	-0.00028815	-0.5187	-0.00027507	-1.0621	-0.00056322	530.313553731146	88.066	0.81544	88.066	87.644	88.46	0					33	15	3	0	0	0	0.63622	1	32387	32387		14.405	0	1	5942800			4196	29620	2770	2812	4114	4114					0.08546906374067476
ATLLIVNRY	9	Unmodified	_ATLLIVNRY_					0	0	0		ENSG00000103549|ENST00000324685|RNF40;nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;nc|ENSG00000103549|O75150-4|RNF40;RNF40|p.E411Rfs*76|1|0.29|ENSG00000103549|chr16:30766496-30766496|G/-|frameshift_variant	ENSG00000103549|ENST00000324685|RNF40	ENSG00000103549|ENST00000324685|RNF40	MULTI-SECPEP	A375_MHC_IP_R1	1	532.2186279296875	2	531.818941	1061.62333	-0.56707	-0.00030158	-0.38363	-0.00020402	-0.95069	-0.0005056	531.8187509518118	77.755	0.86413	77.755	77.235	78.099	0					23	16	2	0	0	0	0.20567	1	28373	28373		37.974	1.4678	1	2314900			4197	2462	2771	2813	4115	4115					0.09498308748334239
ATLNIIHSV	9	Unmodified	_ATLNIIHSV_					0	0	0		nc|ENSG00000143952|Q9P1Q0-2|VPS54;ENSG00000143952|ENST00000272322|VPS54;nc|ENSG00000143952|Q9P1Q0-3|VPS54;nc|ENSG00000143952|Q9P1Q0-4|VPS54	nc|ENSG00000143952|Q9P1Q0-2|VPS54	nc|ENSG00000143952|Q9P1Q0-2|VPS54	MULTI-MSMS	A375_MHC_IP_R1	1	484.6824951171875	2	484.282192	966.549831	-0.44658	-0.00021627	0.43939	0.00021279	-0.0071889	-3.4815E-06	484.2824864668938	65.93	0.45631	65.93	65.666	66.122	0					11	8	2	0	0	0	0.0099737	1	23887	23887		96.367	48.021	1	1556200			4198	5450	2772	2814	4116	4116					0.06521760305849966
ATLPRNFHY	9	Unmodified	_ATLPRNFHY_					0	0	0		ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1	ENSG00000198561|ENST00000399050|CTNND1	ENSG00000198561|ENST00000399050|CTNND1	MULTI-SECPEP	A375_MHC_IP_R1	1	374.2639465332031	3	373.529569	1117.56688	0.19174	7.1619E-05	0.30099	0.00011243	0.49273	0.00018405	373.52961853797507	40.024	0.61055	40.024	39.592	40.203	0					20	11	3	0	0	0	0.75519	1	13745	13745		10.151	1.995	1	4529400			4199	9283	2773	2815	4117	4117					0.01279680911648029
ATLPRNFHY	9	Unmodified	_ATLPRNFHY_					0	0	0		ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1	ENSG00000198561|ENST00000399050|CTNND1	ENSG00000198561|ENST00000399050|CTNND1	MULTI-SECPEP	A375_MHC_IP_R2	2	373.9295654296875	3	373.529569	1117.56688	0.26417	9.8675E-05	-0.12572	-4.6961E-05	0.13845	5.1714E-05	373.5294719404044	39.216	0.76646	39.991	39.453	40.219	0.77451					18	14	2	0	0	0	0.71071	1	14494	14494		10.151	10.151	1	5171700			4200	9283	2773	2815	4118	4118					0.01279680911648029
ATLQDIIRRF	10	Unmodified	_ATLQDIIRRF_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENSG00000068976|ENST00000164139|PYGM;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R1	1	411.9750061035156	3	411.575178	1231.70371	0.14658	6.033E-05	-0.27232	-0.00011208	-0.12574	-5.175E-05	411.57505955233245	98.633	0.91714	98.633	98.3	99.218	0					56	17	5	0	0	0	0.076247	2	36202	36202;36378		68.76	46.651	1	47708000			4201	2241;2187	2774	2816	4119;4120	4119					0.0971217007136147
ATLQDIIRRF	10	Unmodified	_ATLQDIIRRF_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENSG00000068976|ENST00000164139|PYGM;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R2	2	411.9754333496094	3	411.575178	1231.70371	-0.090782	-3.7364E-05	-0.02893	-1.1907E-05	-0.11971	-4.9271E-05	411.5751619858118	97.716	1.0169	98.471	98.077	99.094	0.75586					60	19	5	0	0	0	0.26272	2	37015	37015;37235		42.835	18.871	1	45565000			4202	2241;2187	2774	2816	4121;4122	4121					0.0971217007136147
ATLQDIIRRF	10	Unmodified	_ATLQDIIRRF_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENSG00000068976|ENST00000164139|PYGM;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	A375_MHC_IP_R2	2	617.2588500976562	2	616.859129	1231.70371	-0.7549	-0.00046566	-0.037089	-2.2878E-05	-0.79198	-0.00048854	616.8590570179531	97.677	0.71207	98.433	98.128	98.84	0.75587					37	13	4	0	0	0	0.85215	1	37035	37035		17.443	5.202	1	8920500			4203	2241;2187	2774	2816	4123	4123					0.0971217007136147
ATLTKYPESRI	11	Unmodified	_ATLTKYPESRI_					0	0	0		ENSG00000134504|ENST00000580059|KCTD1;nc|ENSG00000134504|Q719H9|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	MULTI-SECPEP	A375_MHC_IP_R2	2	640.2557373046875	2	639.856252	1277.69795	-0.57711	-0.00036926	-0.25551	-0.00016349	-0.83261	-0.00053275	639.8558797557381	85.861	0.60989	86.595	86.339	86.949	0.73436					25	11	3	0	0	0	0.9754	1	32667	32667		12.241	2.8575	1	2518900			4204	4581	2775	2817	4124	4124					0.07021026769029959
ATLTTGKCED	10	Unmodified	_ATLTTGKCED_					0	0	0			REV__ENSG00000163029|ENST00000448223|SMC6	REV__ENSG00000163029|ENST00000448223|SMC6	MSMS	A375_MHC_IP_R2	2	519.6547241210938	2	519.742239	1037.46993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.177	1	43.949	43.449	44.449	0.7724								0	0	0	0.14983	1	16079	16079		18.146	4.2403	1		+		4205	20330	2776	2818	4125	4125					-0.04731094150292847
ATLYHPASSP	10	Unmodified	_ATLYHPASSP_					0	0	0			REV__EPHA2|p.P329S|1|0.1|ENSG00000142627|chr1:16138180-16138180|G/A|missense_variant	REV__EPHA2|p.P329S|1|0.1|ENSG00000142627|chr1:16138180-16138180|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	523.6602783203125	2	522.261456	1042.50836	-0.62758	-0.00032776	-0.98638	-0.00051515	-1.614	-0.00084291	522.2612095629999	40.002	1.1679	40.777	40.422	41.59	0.77451					77	22	7	0	0	0	0.57505	1	14728	14728		22.736	2.3217	1	64823000	+		4206	26582	2777	2819	4126	4126					-0.011194204534831442
ATMEKTFYKLN	11	Unmodified	_ATMEKTFYKLN_					0	0	0			REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	A375_MHC_IP_R2	2	449.6317443847656	3	449.232201	1344.67477	-0.57477	-0.00025821	-0.5952	-0.00026738	-1.17	-0.00052559	449.23195200952955	18.874	0.31025	19.477	19.423	19.733	0.60308					14	7	3	0	0	0	0.99625	1	5717	5717		4.7159	0	1	40118000	+		4207	22186	2778	2820	4127	4127					0.0162226466006814
ATMFPRREF	9	Unmodified	_ATMFPRREF_					0	0	0		ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	MULTI-SECPEP	A375_MHC_IP_R1	1	385.93072509765625	3	385.530693	1153.57025	0.78241	0.00030164	-0.65728	-0.0002534	0.12513	4.8241E-05	385.530573216303	44.752	0.40693	44.752	44.471	44.878	0					12	7	2	0	0	0	0.49205	1	15625	15625		15.739	8.7015	1	2578600			4208	5471	2779	2821	4128	4128					-0.0003939230598462018
ATMFPRREF	9	Unmodified	_ATMFPRREF_					0	0	0		ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	MULTI-SECPEP	A375_MHC_IP_R2	2	385.93084716796875	3	385.530693	1153.57025	0.085467	3.295E-05	-0.21337	-8.226E-05	-0.1279	-4.9309E-05	385.5307140201677	43.848	0.4529	44.617	44.38	44.833	0.76909					14	8	2	0	0	0	0.59098	1	16352	16352		20.581	10.266	1	3856300			4209	5471	2779	2821	4129	4129					-0.0003939230598462018
ATMPEPLAS	9	Unmodified	_ATMPEPLAS_					0	0	0			REV__BMP2K|p.P334S|1|0.39|ENSG00000138756|chr4:78861401-78861401|C/T|missense_variant	REV__BMP2K|p.P334S|1|0.39|ENSG00000138756|chr4:78861401-78861401|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	459.14794921875	2	458.725861	915.437169	0.20484	9.3963E-05	-0.58653	-0.00026906	-0.38169	-0.00017509	458.7255226884535	38.895	0.20243	38.895	38.78	38.983	0					5	3	2	0	0	0	0.58271	1	13247	13247		14.838	0	1	1138500	+		4210	15514	2780	2822	4130	4130					-0.023932564825031477
ATNALHTTF	9	Unmodified	_ATNALHTTF_					0	0	0			REV__nc|ENSG00000186174|Q86UU0-3|BCL9L	REV__nc|ENSG00000186174|Q86UU0-3|BCL9L	MULTI-MSMS	A375_MHC_IP_R2	2	489.1493835449219	2	488.248349	974.482145	-0.48435	-0.00023648	-1.6991	-0.00082959	-2.1835	-0.0010661	488.24718470531485	42.983	0.7601	43.755	43.319	44.079	0.7724					25	14	3	0	0	0	0.61998	1	16058	16058		13.906	1.3745	1	4454000	+		4211	21952	2781	2823	4131	4131					-0.006116896249750425
ATNPESKVF	9	Unmodified	_ATNPESKVF_					0	0	0		ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	MULTI-MSMS	A375_MHC_IP_R1	1	497.1557312011719	2	496.756007	991.497461	-0.3717	-0.00018465	-0.045327	-2.2516E-05	-0.41703	-0.00020716	496.75593777019793	33.465	0.91257	33.465	33.19	34.103	0					44	17	4	0	0	0	0.0095015	1	10886	10886		107.56	53.731	1	51103000			4212	4564	2782	2824	4132	4132					0.001371771722460835
ATNPESKVF	9	Unmodified	_ATNPESKVF_					0	0	0		ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	MULTI-MSMS	A375_MHC_IP_R2	2	497.1552734375	2	496.756007	991.497461	-0.5409	-0.0002687	-0.048871	-2.4277E-05	-0.58978	-0.00029297	496.75592886843486	32.707	0.76421	33.444	33.162	33.926	0.73692					46	14	5	0	0	0	0.0085482	1	11626	11626		128.57	74.74	1	57429000			4213	4564	2782	2824	4133	4133					0.001371771722460835
ATNPISRVL	9	Unmodified	_ATNPISRVL_					0	0	0		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	486.1524658203125	2	485.787641	969.56073	-0.97103	-0.00047171	0.29765	0.0001446	-0.67337	-0.00032712	485.78771965002096	59.78	0.80775	60.527	60.047	60.855	0.74714					25	15	2	0	0	0	0.13244	1	22640	22640		51.415	18.63	1	10143000			4214	2789	2783	2825	4134	4134					0.07473162680150836
ATNRITVTW	9	Unmodified	_ATNRITVTW_					0	0	0		ENSG00000105229|ENST00000262971|PIAS4	ENSG00000105229|ENST00000262971|PIAS4	ENSG00000105229|ENST00000262971|PIAS4	MULTI-SECPEP	A375_MHC_IP_R1	1	531.6902465820312	2	531.290548	1060.56654	-0.57662	-0.00030635	0.42353	0.00022502	-0.15309	-8.1334E-05	531.29069049731	59.88	0.66201	59.88	59.599	60.261	0					22	12	2	0	0	0	0.044425	1	21550	21550		96.936	48.59	1	28872000			4215	2580	2784	2826	4135	4135					0.03868261191792044
ATNRPDTLDPA	11	Unmodified	_ATNRPDTLDPA_					0	0	0		nc|ENSG00000161057|P35998-2|PSMC2;ENSG00000161057|ENST00000292644|PSMC2;ENSG00000100519|ENST00000445930|PSMC6	nc|ENSG00000161057|P35998-2|PSMC2;ENSG00000100519|ENST00000445930|PSMC6	nc|ENSG00000161057|P35998-2|PSMC2	MULTI-SECPEP	A375_MHC_IP_R1	1	391.5964050292969	3	390.863165	1169.56767	0.063181	2.4695E-05	1.2015	0.00046962	1.2647	0.00049432	390.86343949874555	33.189	1.6688	33.189	32.535	34.203	0					68	32	4	0	0	0	0.98303	1	10652	10652		4.8923	2.049	1	11436000			4216	6463;2188	2785	2827	4136	4136					-0.01033569229934983
ATNTKMMNY	9	Unmodified	_ATNTKMMNY_					0	0	0			REV__ENST00000477063.5_1_3:122928052-122962678:+|nuORF	REV__ENST00000477063.5_1_3:122928052-122962678:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	537.6416015625	2	537.241352	1072.46815	-0.46552	-0.0002501	0.7752	0.00041647	0.30968	0.00016637	537.2417169520212	71.923	0.90909	71.923	71.615	72.524	0					47	17	4	0	0	0	0.4261	1	26080	26080		37.974	1.9298	1	30048000	+		4217	18163	2786	2828	4137	4137					-0.06518426439902214
ATNTKMMNY	9	Unmodified	_ATNTKMMNY_					0	0	0			REV__ENST00000477063.5_1_3:122928052-122962678:+|nuORF	REV__ENST00000477063.5_1_3:122928052-122962678:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	537.241352	1072.46815	-1.0922	-0.00058675	0.82101	0.00044108	-0.27114	-0.00014567	537.2417512526249	71.279	0.96188	72.013	71.605	72.567	0.73421	0.044977	2.1218E-05	NaN	37.974	50	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31444000	+		4218	18163	2786	2828							-0.06518426439902214
ATNVVRLL	8	Unmodified	_ATNVVRLL_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-MSMS	A375_MHC_IP_R1	1	443.6793518066406	2	443.279452	884.544351	-0.13319	-5.9042E-05	0.19033	8.4369E-05	0.057137	2.5328E-05	443.2795118945994	64.37	4.0168	64.37	63.887	67.904	0					212	78	4	0	0	0	0.033954	1	23176	23176		107.19	35.265	1	103310000			4219	2385	2787	2829	4138	4138					0.09746081514037996
ATNVVRLL	8	Unmodified	_ATNVVRLL_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-MSMS	A375_MHC_IP_R2	2	443.67938232421875	2	443.279452	884.544351	-0.31226	-0.00013842	-0.026883	-1.1917E-05	-0.33914	-0.00015034	443.2793990105494	63.374	3.6112	64.114	63.582	67.193	0.74022					208	70	4	0	0	0	0.033954	1	23895	23895		107.19	49.465	1	102680000			4220	2385	2787	2829	4139	4139					0.09746081514037996
ATNWNFLFF	9	Unmodified	_ATNWNFLFF_					0	0	0		nc|ENSG00000183780|Q8IY50|SLC35F3;ENSG00000183780|ENST00000366618|SLC35F3	nc|ENSG00000183780|Q8IY50|SLC35F3	nc|ENSG00000183780|Q8IY50|SLC35F3	MULTI-SECPEP	A375_MHC_IP_R1	1	387.95709228515625	3	387.190553	1158.54983	-0.051837	-2.0071E-05	-0.11755	-4.5514E-05	-0.16939	-6.5585E-05	387.1905893228665	30.78	0.20381	30.78	30.653	30.857	0					5	3	2	0	0	0	0.80101	1	9781	9781		2.7352	0	1	598340			4221	8528	2788	2830	4140	4140					-0.023102396941339975
ATPAKKAA	8	Unmodified	_ATPAKKAA_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MSMS	A375_MHC_IP_R1	1	379.2729797363281	2	379.231971	756.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.702	1	42.702	42.202	43.202	0								0	0	0	0.16876	1	14809	14809		10.824	0	1				4222	3266	2789	2831	4141	4141					0.06142148042840745
ATPFDSEHL	9	Unmodified	_ATPFDSEHL_					0	0	0		ENST00000376723.7_1_2:128947369-128947495:+|nuORF	ENST00000376723.7_1_2:128947369-128947495:+|nuORF	ENST00000376723.7_1_2:128947369-128947495:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	509.16546630859375	2	508.737814	1015.46108	-0.73091	-0.00037184	-1.0173	-0.00051752	-1.7482	-0.00088936	508.7371393042203	76.153	0.55703	76.894	76.589	77.146	0.74052					17	10	2	0	0	0	0.63811	1	28796	28796		12.532	12.532	1	1473700			4223	11289	2790	2832	4142	4142					-0.046036997244755185
ATPFNMVIIK	10	Unmodified	_ATPFNMVIIK_					0	0	0		ENST00000253692.11_2_3:17198669-17198723:-|nuORF	ENST00000253692.11_2_3:17198669-17198723:-|nuORF	ENST00000253692.11_2_3:17198669-17198723:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1133.4892578125	1	1133.63873	1132.63145	0.56618	0.00064184	1.1594	0.0013143	1.7255	0.0019561	1134.6438975503113	114.24	0.86625	114.24	113.5	114.36	0					24	16	2	0	0	0	0.91556	1	41662	41662		6.2058	0	1	8671400			4224	10219	2791	2833	4143	4143					0.07044119673423666
ATPQRWSP	8	Unmodified	_ATPQRWSP_					0	0	0			REV__ENSG00000270765|ENST00000604641|GAS2L2	REV__ENSG00000270765|ENST00000604641|GAS2L2	MULTI-SECPEP	A375_MHC_IP_R1	1	471.3243713378906	2	471.743234	941.471915	-0.30197	-0.00014245	0.79376	0.00037445	0.4918	0.000232	471.74354194095156	47.659	0.25191	47.659	47.517	47.768	0					7	4	2	0	0	0	0.972	1	16729	16729		7.9102	7.9102	1	771200	+		4225	22942	2792	2834	4144	4144					-0.0011625255953049418
ATPTVSAVPIQ	11	Unmodified	_ATPTVSAVPIQ_					0	0	0			REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C	REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	A375_MHC_IP_R1	1	362.273193359375	3	361.873001	1082.59717	0.37823	0.00013687	0.40518	0.00014662	0.78341	0.00028349	361.87315077335995	35.722	0.76423	35.722	35.369	36.133	0					35	14	4	0	0	0	0.61555	1	11862	11862		22.109	7.271	1	13823000	+		4226	18012	2793	2835	4145	4145					0.05917994786182135
ATQAHCRRTP	10	Unmodified	_ATQAHCRRTP_					0	0	0		ENST00000325167.9_1_17:78972954-78973176:+|nuORF	ENST00000325167.9_1_17:78972954-78973176:+|nuORF	ENST00000325167.9_1_17:78972954-78973176:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	570.9671020507812	2	570.788181	1139.56181	-0.57765	-0.00032971	-0.88648	-0.00050599	-1.4641	-0.00083571	570.7877574509994	58.1	1.2689	58.849	58.323	59.592	0.74894					55	24	4	0	0	0	0.88361	1	21810	21810		30.637	30.637	1	11862000			4227	10721	2794	2836	4146	4146					-0.0023894622261195764
ATQERTDLY	9	Unmodified	_ATQERTDLY_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-SECPEP	A375_MHC_IP_R1	1	549.1665649414062	2	548.767103	1095.51965	-0.64263	-0.00035266	-0.47957	-0.00026317	-1.1222	-0.00061583	548.766723905723	27.538	0.80749	27.538	27.28	28.088	0					28	15	3	0	0	0	0.05217	1	8360	8360		79.596	48.96	1	12099000			4228	2781	2795	2837	4147	4147					-0.02428643149983145
ATQERTDLY	9	Unmodified	_ATQERTDLY_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-SECPEP	A375_MHC_IP_R2	2	549.1669921875	2	548.767103	1095.51965	-0.92646	-0.00050841	-0.27318	-0.00014991	-1.1996	-0.00065832	548.7666535426354	26.934	0.76727	27.594	27.414	28.181	0.65992					27	14	3	0	0	0	0.05217	1	9161	9161		79.596	47.291	1	10597000			4229	2781	2795	2837	4148	4148					-0.02428643149983145
ATQGALFRP	9	Unmodified	_ATQGALFRP_					0	0	0			REV__ENST00000464262.6_1_7:36910010-37025590:-|nuORF	REV__ENST00000464262.6_1_7:36910010-37025590:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	480.1820373535156	2	480.766709	959.518865	-0.3768	-0.00018115	0.26049	0.00012524	-0.11631	-5.5916E-05	480.7667646160595	47.183	0.45928	47.945	47.664	48.123	0.76128					12	8	2	0	0	0	0.56537	1	17744	17744		29.082	7.3349	1	1135400	+		4230	25011	2796	2838	4149	4149					0.03748606991609904
ATQQPDEQI	9	Unmodified	_ATQQPDEQI_					0	0	0			REV__ENSG00000188786|ENST00000373036|MTF1	REV__ENSG00000188786|ENST00000373036|MTF1	MULTI-MSMS	A375_MHC_IP_R2	2	515.1504516601562	2	515.246003	1028.47745	-0.66144	-0.00034081	1.9364	0.00099772	1.2749	0.00065691	515.2470149116785	90.334	0.91538	91.066	90.545	91.46	0.7318					24	17	2	0	0	0	0.58047	1	34466	34466		15.847	1.2655	1	2588700	+		4231	22114	2797	2839	4150	4150					-0.035646185583800616
ATQTRGLW	8	Unmodified	_ATQTRGLW_					0	0	0			REV__nc|ENSG00000173898|O15020-2|SPTBN2	REV__nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-SECPEP	A375_MHC_IP_R1	1	467.15069580078125	2	466.751059	931.487565	-0.24721	-0.00011538	0.22014	0.00010275	-0.027071	-1.2635E-05	466.7510192105265	54.764	0.66019	54.764	54.516	55.177	0					17	12	2	0	0	0	0.76996	1	19573	19573		36.127	2.0246	1	3912200	+		4232	21253	2798	2840	4151	4151					0.019080339575111793
ATRCSYNL	8	Unmodified	_ATRCSYNL_					0	0	0			REV__ENST00000254322.2_1_19:14626154-14626388:-|nuORF	REV__ENST00000254322.2_1_19:14626154-14626388:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	464.68450927734375	2	464.221277	926.428001	-0.1879	-8.7226E-05	-1.4167	-0.00065768	-1.6046	-0.00074491	464.22009150597836	33.522	0.20312	33.522	33.445	33.648	0					5	3	2	0	0	0	0.75805	1	10941	10941		18.135	0	1	417810	+		4233	23138	2799	2841	4152	4152					-0.038156050481802595
ATRFLELK	8	Unmodified	_ATRFLELK_					0	0	0		ENST00000552395.5_1_12:54854238-54867343:-|nuORF	ENST00000552395.5_1_12:54854238-54867343:-|nuORF	ENST00000552395.5_1_12:54854238-54867343:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	488.6477355957031	2	489.292559	976.570566	-0.87527	-0.00042826	-0.45423	-0.00022225	-1.3295	-0.00065052	489.2920744757899	58.49	0.45881	59.239	58.879	59.338	0.74895					12	8	2	0	0	0	0.972	1	22022	22022		13.508	0	1	840660			4234	13389	2800	2842	4153	4153					0.08134350685509162
ATRFLELK	8	Unmodified	_ATRFLELK_					0	0	0		ENST00000552395.5_1_12:54854238-54867343:-|nuORF	ENST00000552395.5_1_12:54854238-54867343:-|nuORF	ENST00000552395.5_1_12:54854238-54867343:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	489.292559	976.570566	-0.28326	-0.0001386	-0.71193	-0.00034834	-0.99519	-0.00048694	489.2920223059755	59.473	0.40522	59.473	59.194	59.599	0	0.11684	-0.00014766	NaN	13.508	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1565800			4235	13389	2800	2842							0.08134350685509162
ATRLDSRSFFW	11	Unmodified	_ATRLDSRSFFW_					0	0	0		nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN;ENST00000459963.5_1_1:160321502-160323118:+|nuORF	nc|ENSG00000162736|Q92542-2|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	MULTI-MSMS	A375_MHC_IP_R1	1	462.9701232910156	3	462.570204	1384.68878	-0.19175	-8.8699E-05	-0.04464	-2.0649E-05	-0.23639	-0.00010935	462.5701588198566	81.639	0.55729	81.639	81.353	81.911	0					23	10	3	0	0	0	0.56388	1	29856	29856		26.121	12.602	1	3124600			4236	6585	2801	2843	4154	4154					0.011826782033722338
ATRLDSRSFFW	11	Unmodified	_ATRLDSRSFFW_					0	0	0		nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN;ENST00000459963.5_1_1:160321502-160323118:+|nuORF	nc|ENSG00000162736|Q92542-2|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	MULTI-MSMS	A375_MHC_IP_R2	2	462.9696350097656	3	462.570204	1384.68878	-0.60181	-0.00027838	-0.034829	-1.6111E-05	-0.63664	-0.00029449	462.5700155912377	80.783	0.61472	81.528	81.315	81.93	0.74474					22	11	3	0	0	0	0.64767	1	30683	30683		19.615	3.0495	1	3615700			4237	6585	2801	2843	4155	4155					0.011826782033722338
ATRLPWVLF	9	Unmodified	_ATRLPWVLF_					0	0	0			REV__ENST00000381153.7_1_11:2320921-2323091:-|nuORF	REV__ENST00000381153.7_1_11:2320921-2323091:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	367.6289978027344	3	368.218443	1101.6335	0.070184	2.5843E-05	-0.12398	-4.5652E-05	-0.053797	-1.9809E-05	368.2184041015918	38.449	0.30896	38.449	38.268	38.577	0					10	5	2	0	0	0	0.80005	1	13004	13004		1.0715	0.10919	1	3002600	+		4238	24230	2802	2844	4156	4156					0.08674916473546546
ATRNRNQF	8	Unmodified	_ATRNRNQF_					0	0	0			REV__nc|ENSG00000163606|Q8TD46-1|CD200R1	REV__nc|ENSG00000163606|Q8TD46-1|CD200R1	MULTI-SECPEP	A375_MHC_IP_R2	2	504.183349609375	2	503.762489	1005.51043	-0.89605	-0.0004514	1.9232	0.00096884	1.0272	0.00051744	503.76323970986067	35.43	0.35332	36.193	36.03	36.384	0.76338					10	6	2	0	0	0	0.97144	1	12881	12881		5.2307	0.47466	1	1636200	+		4239	20382	2803	2845	4157	4157					0.007890530749932623
ATRPHRMPF	9	Unmodified	_ATRPHRMPF_					0	0	0		ENST00000441094.5_1_3:9792033-9793586:+|nuORF	ENST00000441094.5_1_3:9792033-9793586:+|nuORF	ENST00000441094.5_1_3:9792033-9793586:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	371.2696228027344	3	371.530915	1111.57092	0.40478	0.00015039	1.3301	0.00049419	1.7349	0.00064457	371.5310958966278	50.127	0.15424	50.127	49.998	50.153	0					4	2	2	0	0	0	0.80005	1	17712	17712		0.23584	0	1	658470			4240	11978	2804	2846	4158	4158					0.01959447133708636
ATRPSFPV	8	Unmodified	_ATRPSFPV_					0	0	0			REV__nc|ENSG00000127603|O94854-4|MACF1;REV__nc|ENSG00000127603|O94854|MACF1	REV__nc|ENSG00000127603|O94854|MACF1	MULTI-SECPEP	A375_MHC_IP_R2	2	437.1816711425781	2	437.742702	873.470852	-0.48928	-0.00021418	0.14794	6.4758E-05	-0.34134	-0.00014942	437.74260167085083	65.752	0.30422	66.49	66.273	66.577	0.73812					7	5	2	0	0	0	0.94479	1	24876	24876		13.508	13.508	1	987680	+		4241	27214;27213	2805	2847	4159	4159					0.029055330715777927
ATRRLRKEVG	10	Unmodified	_ATRRLRKEVG_					0	0	0			REV__ENST00000296930.9_1_5:170814684-170814831:+|nuORF	REV__ENST00000296930.9_1_5:170814684-170814831:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	593.9869995117188	2	593.36237	1184.71019	-0.36881	-0.00021884	2.2383	0.0013281	1.8695	0.0011093	593.3638011699721	73.39	0.40573	73.39	73.184	73.589	0					11	7	2	0	0	0	0.93405	1	26760	26760		5.2969	0.39987	1	1213800	+		4242	23393	2806	2848	4160	4160					0.1252210802274476
ATRRPVGV	8	Unmodified	_ATRRPVGV_					0	0	0			REV__ENST00000206595.10_1_14:31028388-31028445:+|nuORF	REV__ENST00000206595.10_1_14:31028388-31028445:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	428.6612854003906	2	428.261594	854.508634	0.13337	5.7117E-05	1.0003	0.00042839	1.1337	0.00048551	428.261928471874	127.65	1.6237	127.65	127.42	129.04	0					74	31	3	0	0	0	0.77839	1	48934	48934		0.79363	0	1	158820000	+		4243	23024	2807	2849	4161	4161					0.07556044057048439
ATRSLEKL	8	Unmodified	_ATRSLEKL_					0	0	0			REV__ENSG00000164256|ENST00000296682|PRDM9	REV__ENSG00000164256|ENST00000296682|PRDM9	MULTI-MSMS	A375_MHC_IP_R2	2	459.36993408203125	2	459.274367	916.53418	-0.41885	-0.00019237	-0.075079	-3.4482E-05	-0.49393	-0.00022685	459.2743800468325	39.876	0.25378	40.651	40.473	40.727	0.77451					7	4	2	0	0	0	0.77028	1	14759	14759		14.838	0.93222	1	1927200	+		4244	20472	2808	2850	4162	4162					0.07257473788820334
ATRSPVDINY	10	Unmodified	_ATRSPVDINY_					0	0	0			REV__nc|ENSG00000116690|Q92954-4|PRG4	REV__nc|ENSG00000116690|Q92954-4|PRG4	MULTI-SECPEP	A375_MHC_IP_R2	2	568.6900634765625	2	568.290745	1134.56694	-0.67683	-0.00038464	0.45703	0.00025973	-0.2198	-0.00012491	568.2909786303331	54.05	0.66253	54.801	54.557	55.22	0.75105					16	12	2	0	0	0	0.83327	1	20423	20423		29.841	11.694	1	2059400	+		4245	17965	2809	2851	4163	4163					0.005036361209931783
ATRSWVWTRS	10	Unmodified	_ATRSWVWTRS_					0	0	0		ENST00000549793.5_2_15:42695178-42701567:+|nuORF	ENST00000549793.5_2_15:42695178-42701567:+|nuORF	ENST00000549793.5_2_15:42695178-42701567:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	416.94482421875	3	417.219395	1248.63635	0.14257	5.9482E-05	0.039824	1.6615E-05	0.18239	7.6097E-05	417.5542041915336	27.43	0.45445	27.43	27.229	27.684	0					18	8	4	0	0	0	0.70682	1	8329	8329		9.2438	0.49199	1	2424500			4246	13362	2810	2852	4164	4164					0.021981398604111746
ATSDLNIKV	9	Unmodified	_ATSDLNIKV_					0	0	0		nc|ENSG00000163069|Q16585-2|SGCB;ENSG00000163069|ENST00000381431|SGCB	nc|ENSG00000163069|Q16585-2|SGCB	nc|ENSG00000163069|Q16585-2|SGCB	MULTI-MSMS	A375_MHC_IP_R1	1	481.17144775390625	2	480.771657	959.528761	-0.053726	-2.583E-05	0.36339	0.00017471	0.30966	0.00014888	480.7717578621644	49.564	0.5584	49.564	49.235	49.793	0					19	10	3	0	0	0	0.032333	1	17573	17573		72.968	25.219	1	3006800			4247	6629	2811	2853	4165	4165					0.04737750206345481
ATSGKFGY	8	Unmodified	_ATSGKFGY_					0	0	0		ENST00000340080.8_1_7:7606567-7607293:+|nuORF	ENST00000340080.8_1_7:7606567-7607293:+|nuORF	ENST00000340080.8_1_7:7606567-7607293:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	416.1056823730469	2	415.705786	829.397018	0.19128	7.9516E-05	-0.10225	-4.2505E-05	0.089032	3.7011E-05	415.7056981489019	33.15	0.4554	33.15	32.938	33.393	0					16	8	3	0	0	0	0.74945	1	10786	10786		20.454	1.0146	1	4977600			4248	10852	2812	2854	4166	4166					-0.024504350907591288
ATSGKFGY	8	Unmodified	_ATSGKFGY_					0	0	0		ENST00000340080.8_1_7:7606567-7607293:+|nuORF	ENST00000340080.8_1_7:7606567-7607293:+|nuORF	ENST00000340080.8_1_7:7606567-7607293:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	416.1056213378906	2	415.705786	829.397018	-0.056191	-2.3359E-05	-0.0021199	-8.8125E-07	-0.058311	-2.424E-05	415.7057115131304	32.451	0.45735	33.187	32.96	33.417	0.73692					14	8	2	0	0	0	0.76248	1	11546	11546		16.942	4.4107	1	5347400			4249	10852	2812	2854	4167	4167					-0.024504350907591288
ATSLLDTLVL	10	Unmodified	_ATSLLDTLVL_					0	0	0		ENSG00000254470|ENST00000532090|AP5B1	ENSG00000254470|ENST00000532090|AP5B1	ENSG00000254470|ENST00000532090|AP5B1	MULTI-SECPEP	A375_MHC_IP_R1	1	523.7098999023438	2	523.310615	1044.60668	-0.34905	-0.00018266	-0.49301	-0.000258	-0.84207	-0.00044066	523.3102161965239	78.383	0.75854	78.383	77.998	78.756	0					32	14	3	0	0	0	0.69172	1	28565	28565		19.257	4.4187	1	7064700			4250	9877	2813	2855	4168	4168					0.08615763071702531
ATSPFAKER	9	Unmodified	_ATSPFAKER_					0	0	0		nc|ENSG00000088881|Q9BQW3-1|EBF4	nc|ENSG00000088881|Q9BQW3-1|EBF4	nc|ENSG00000088881|Q9BQW3-1|EBF4	MULTI-SECPEP	A375_MHC_IP_R2	2	504.12005615234375	2	503.769448	1005.52434	-1.0615	-0.00053474	0.0042253	2.1286E-06	-1.0572	-0.00053261	503.7693895384588	52.305	0.45345	53.057	52.831	53.285	0.75225					11	8	2	0	0	0	0.71341	1	19705	19705		18.146	10.857	1	3291100			4251	14494	2814	2856	4169	4169					0.021802857834245515
ATSPGRLF	8	Unmodified	_ATSPGRLF_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-SECPEP	A375_MHC_IP_R2	2	425.1344299316406	2	424.734877	847.455202	-0.12197	-5.1805E-05	-0.010715	-4.5508E-06	-0.13268	-5.6356E-05	424.7347583778924	45.901	0.40295	46.666	46.453	46.855	0.76519					12	7	2	0	0	0	0.972	1	17216	17216		10.074	0	1	1541100			4252	2144	2815	2857	4170	4170					0.02537246554527428
ATSPGRLF	8	Unmodified	_ATSPGRLF_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MATCH	A375_MHC_IP_R1	1		2	424.734877	847.455202	-0.28061	-0.00011919	0.49822	0.00021161	0.21761	9.2426E-05	424.7348606831298	46.857	0.40781	46.857	46.647	47.055	0	0.095371	0.00025693	NaN	10.074	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1281800			4253	2144	2815	2857							0.02537246554527428
ATSQLIGTIFF	11	Unmodified	_ATSQLIGTIFF_					0	0	0		SLC23A2|p.I524Pfs*41|1|0.39|ENSG00000089057|chr20:4861987-4862003|CGAGCCCAAAGAAGATC/-|frameshift_variant;ENSG00000089057|ENST00000338244|SLC23A2;ENST00000468355.5_1_20:4850526-4913271:-|nuORF;nc|ENSG00000089057|Q9UGH3-2|SLC23A2	SLC23A2|p.I524Pfs*41|1|0.39|ENSG00000089057|chr20:4861987-4862003|CGAGCCCAAAGAAGATC/-|frameshift_variant	SLC23A2|p.I524Pfs*41|1|0.39|ENSG00000089057|chr20:4861987-4862003|CGAGCCCAAAGAAGATC/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	599.72900390625	2	599.329339	1196.64412	-0.62631	-0.00037537	-0.052165	-3.1264E-05	-0.67847	-0.00040663	599.329349636354	131.96	0.20126	131.96	131.83	132.03	0					6	3	2	0	0	0	0.056695	1	50901	50901		78.06	46.792	1	13728000			4254	1912	2816	2858	4171	4171					0.05366854337330551
ATSQLIGTIFF	11	Unmodified	_ATSQLIGTIFF_					0	0	0		SLC23A2|p.I524Pfs*41|1|0.39|ENSG00000089057|chr20:4861987-4862003|CGAGCCCAAAGAAGATC/-|frameshift_variant;ENSG00000089057|ENST00000338244|SLC23A2;ENST00000468355.5_1_20:4850526-4913271:-|nuORF;nc|ENSG00000089057|Q9UGH3-2|SLC23A2	SLC23A2|p.I524Pfs*41|1|0.39|ENSG00000089057|chr20:4861987-4862003|CGAGCCCAAAGAAGATC/-|frameshift_variant	SLC23A2|p.I524Pfs*41|1|0.39|ENSG00000089057|chr20:4861987-4862003|CGAGCCCAAAGAAGATC/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	599.329339	1196.64412	-0.49849	-0.00029876	0.062978	3.7745E-05	-0.43551	-0.00026101	599.3290042437714	131.79	0.55573	131.98	131.7	132.25	0.18953	0.0088752	0.00011229	NaN	78.06	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8656900			4255	1912	2816	2858							0.05366854337330551
ATSQVYWTAK	10	Unmodified	_ATSQVYWTAK_					0	0	0		ENSG00000241322|ENST00000395906|FBXW10B;nc|ENSG00000171931|Q5XX13-3|FBXW10;nc|ENSG00000171931|Q5XX13-4|FBXW10;ENSG00000171931|ENST00000395665|FBXW10;nc|ENSG00000171931|Q5XX13-2|FBXW10	ENSG00000241322|ENST00000395906|FBXW10B	ENSG00000241322|ENST00000395906|FBXW10B	MSMS	A375_MHC_IP_R1	1	385.5853576660156	3	385.532868	1153.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.745	1	23.745	23.245	24.245	0								0	0	0	0.15397	1	6586	6586		7.9454	0.46833	1				4256	9783	2817	2859	4172	4172					0.006128241263922973
ATSRFRPIK	9	Unmodified	_ATSRFRPIK_					0	0	0			REV__ENST00000528499.5_1_11:130013375-130013492:+|nuORF	REV__ENST00000528499.5_1_11:130013375-130013492:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	359.9423828125	3	359.217214	1074.62981	-0.4869	-0.0001749	-0.25579	-9.1886E-05	-0.74269	-0.00026679	359.2170220322145	36.461	0.3034	37.232	37.056	37.359	0.7709					8	5	2	0	0	0	0.77948	1	13276	13276		6.6304	0	1	1760000	+		4257	25803	2818	2860	4173	4173					0.09548246699705487
ATSSSERRVAP	11	Unmodified	_ATSSSERRVAP_					0	0	0		ENST00000234256.3_1_2:65216547-65216976:+|nuORF	ENST00000234256.3_1_2:65216547-65216976:+|nuORF	ENST00000234256.3_1_2:65216547-65216976:+|nuORF	MSMS	A375_MHC_IP_R2	2	387.5865478515625	3	387.538793	1159.59455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.612	1	28.291	27.791	28.791	0.67857								0	0	0	0.16182	1	9457	9457		9.2438	1.7667	1				4258	10154	2819	2861	4174	4174					0.02113539381252849
ATSTSWVQAIL	11	Unmodified	_ATSTSWVQAIL_					0	0	0		chr1:9736042-9736856|143|19.35|0.04|9.06|-|1|TE_info:AluSx,AluSx_dup652,Alu,SINE,donor,+,9736856,9737093|CLSTN1,None|2;AluSz6_dup29376|chr11:33733335-33733634:+|1.190464796814965|0.3317479787122618|1.84|472.0|16|3|anti-sense;AluSc8_dup19972|chr19:11449845-11450143:-|1.2528153627575611|0.184113349524997|2.77|472.0|19|3|anti-sense;chr17:81644084-81644992|222|93.22|0.05|10.91|+|0|TE_info:AluSx,AluSx_dup101065,Alu,SINE,donor,-,81643814,81644084|None,TSPAN10|2;ENST00000433619.2_1_X:153740652-153741217:-|nuORF;ENST00000494322.5_1_2:219247091-219256951:+|nuORF	chr1:9736042-9736856|143|19.35|0.04|9.06|-|1|TE_info:AluSx,AluSx_dup652,Alu,SINE,donor,+,9736856,9737093|CLSTN1,None|2	chr1:9736042-9736856|143|19.35|0.04|9.06|-|1|TE_info:AluSx,AluSx_dup652,Alu,SINE,donor,+,9736856,9737093|CLSTN1,None|2	MULTI-MSMS	A375_MHC_IP_R1	1	392.9179382324219	3	392.880156	1175.61864	-0.058548	-2.3002E-05	0.99537	0.00039106	0.93682	0.00036806	392.8804904342974	28.006	1.2103	28.006	27.331	28.541	0					37	23	2	0	0	0	0.7328	1	8736	8736		6.2344	0.45093	1	1627300			4259	114	2820	2862	4175	4175					0.037853798148944406
ATSTSWVQAIL	11	Unmodified	_ATSTSWVQAIL_					0	0	0		chr1:9736042-9736856|143|19.35|0.04|9.06|-|1|TE_info:AluSx,AluSx_dup652,Alu,SINE,donor,+,9736856,9737093|CLSTN1,None|2;AluSz6_dup29376|chr11:33733335-33733634:+|1.190464796814965|0.3317479787122618|1.84|472.0|16|3|anti-sense;AluSc8_dup19972|chr19:11449845-11450143:-|1.2528153627575611|0.184113349524997|2.77|472.0|19|3|anti-sense;chr17:81644084-81644992|222|93.22|0.05|10.91|+|0|TE_info:AluSx,AluSx_dup101065,Alu,SINE,donor,-,81643814,81644084|None,TSPAN10|2;ENST00000433619.2_1_X:153740652-153741217:-|nuORF;ENST00000494322.5_1_2:219247091-219256951:+|nuORF	chr1:9736042-9736856|143|19.35|0.04|9.06|-|1|TE_info:AluSx,AluSx_dup652,Alu,SINE,donor,+,9736856,9737093|CLSTN1,None|2	chr1:9736042-9736856|143|19.35|0.04|9.06|-|1|TE_info:AluSx,AluSx_dup652,Alu,SINE,donor,+,9736856,9737093|CLSTN1,None|2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	392.880156	1175.61864	-0.1624	-6.3804E-05	1.2126	0.0004764	1.0502	0.0004126	393.215016858545	27.408	0.8669	28.086	27.484	28.351	0.67857	0.040317	0.00019241	NaN	6.2344	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2594500			4260	114	2820	2862							0.037853798148944406
ATTHVKSIF	9	Unmodified	_ATTHVKSIF_					0	0	0			REV__ENSG00000217236|ENST00000394967|SP9	REV__ENSG00000217236|ENST00000394967|SP9	MULTI-MSMS	A375_MHC_IP_R2	2	502.69244384765625	2	502.282192	1002.54983	-0.63442	-0.00031866	0.32181	0.00016164	-0.31261	-0.00015702	502.2823291830245	75.533	0.40965	76.274	76.078	76.487	0.74052					10	7	2	0	0	0	0.44024	1	28669	28669		22.736	2.2827	1	1358500	+		4261	22682	2821	2863	4176	4176					0.04865760305847289
ATTIHQIVRQW	11	Unmodified	_ATTIHQIVRQW_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000478082.5_1_7:100856177-100861250:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	A375_MHC_IP_R2	2	451.6482849121094	3	451.585966	1351.73607	-0.42928	-0.00019386	0.12501	5.6454E-05	-0.30427	-0.0001374	451.5859461726378	50.395	0.50757	51.149	50.955	51.462	0.75406					15	9	2	0	0	0	0.62672	1	18961	18961		21.241	13.764	1	1824200			4262	2688	2822	2864	4177	4177					0.07426957474353912
ATTILQHW	8	Unmodified	_ATTILQHW_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	A375_MHC_IP_R1	1	485.6610412597656	2	485.261259	968.507966	-0.31006	-0.00015046	0.77706	0.00037708	0.46701	0.00022662	485.26120390597083	64.558	0.50878	64.558	64.343	64.851	0					21	9	3	0	0	0	0.16582	1	23369	23369		78.149	45.844	1	2955900			4263	9866	2823	2865	4178	4178					0.022452046173157214
ATTILQHW	8	Unmodified	_ATTILQHW_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MATCH	A375_MHC_IP_R2	2		2	485.261259	968.507966	-0.5363	-0.00026025	0.15298	7.4237E-05	-0.38332	-0.00018601	485.2611237266467	63.71	0.71134	64.45	64.038	64.749	0.74023	-0.053943	-8.3159E-05	NaN	78.149	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2513500			4264	9866	2823	2865							0.022452046173157214
ATTRDYYF	8	Unmodified	_ATTRDYYF_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENST00000530336.2_1_14:51390668-51411121:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	A375_MHC_IP_R2	2	518.7005615234375	2	518.740357	1035.46616	-0.52792	-0.00027385	-0.26309	-0.00013647	-0.79101	-0.00041033	518.7402037212912	47.405	0.51056	48.167	47.867	48.378	0.76128					24	9	3	0	0	0	0.7535	1	17739	17739		19.362	2.4196	1	12072000			4265	2187	2824	2866	4179	4179					-0.05015395861869365
ATTRQRLF	8	Unmodified	_ATTRQRLF_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-SECPEP	A375_MHC_IP_R1	1	497.14312744140625	2	496.785433	991.556313	-0.62584	-0.00031091	-0.29146	-0.00014479	-0.91729	-0.0004557	496.78541184125777	32.616	0.55488	32.616	32.383	32.938	0					21	10	3	0	0	0	0.96266	1	10586	10586		7.2892	4.0079	1	2516100			4266	2487	2825	2867	4180	4180					0.06019698257227901
ATTRQRLF	8	Unmodified	_ATTRQRLF_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-SECPEP	A375_MHC_IP_R2	2	497.1849365234375	2	496.785433	991.556313	-0.49347	-0.00024515	-0.03433	-1.7055E-05	-0.5278	-0.0002622	496.7853173623633	31.757	0.45465	32.494	32.3	32.755	0.73691					12	8	2	0	0	0	0.94587	1	11274	11274		14.838	4.7643	1	2603100			4267	2487	2825	2867	4181	4181					0.06019698257227901
ATTRVEKLQY	10	Unmodified	_ATTRVEKLQY_					0	0	0		ENSG00000120071|ENST00000432791|KANSL1;nc|ENSG00000120071|Q7Z3B3-4|KANSL1;ENST00000576870.5_2_17:44108844-44117263:-|nuORF;nc|ENSG00000120071|Q7Z3B3-2|KANSL1;ENST00000572218.5_2_17:44108844-44117263:-|nuORF	ENSG00000120071|ENST00000432791|KANSL1	ENSG00000120071|ENST00000432791|KANSL1	MULTI-MSMS	A375_MHC_IP_R1	1	605.23486328125	2	604.83532	1207.65609	-0.55466	-0.00033548	-0.086867	-5.254E-05	-0.64153	-0.00038802	604.8352263445423	32.811	0.30476	32.811	32.684	32.989	0					9	5	2	0	0	0	0.71245	1	10673	10673		6.7232	0	1	2748100			4268	3649	2826	2868	4182	4182					0.060564710805238064
ATTRVEKLQY	10	Unmodified	_ATTRVEKLQY_					0	0	0		ENSG00000120071|ENST00000432791|KANSL1;nc|ENSG00000120071|Q7Z3B3-4|KANSL1;ENST00000576870.5_2_17:44108844-44117263:-|nuORF;nc|ENSG00000120071|Q7Z3B3-2|KANSL1;ENST00000572218.5_2_17:44108844-44117263:-|nuORF	ENSG00000120071|ENST00000432791|KANSL1	ENSG00000120071|ENST00000432791|KANSL1	MULTI-SECPEP	A375_MHC_IP_R1	1	605.235107421875	2	604.83532	1207.65609	-0.30841	-0.00018654	0.11633	7.0362E-05	-0.19208	-0.00011618	604.8353264820026	50.183	0.61394	50.183	49.896	50.51	0					24	11	3	0	0	0	0.78945	1	17778	17778		25.399	4.9848	1	4342600			4269	3649	2826	2868	4183	4183					0.060564710805238064
ATTRVEKLQY	10	Unmodified	_ATTRVEKLQY_					0	0	0		ENSG00000120071|ENST00000432791|KANSL1;nc|ENSG00000120071|Q7Z3B3-4|KANSL1;ENST00000576870.5_2_17:44108844-44117263:-|nuORF;nc|ENSG00000120071|Q7Z3B3-2|KANSL1;ENST00000572218.5_2_17:44108844-44117263:-|nuORF	ENSG00000120071|ENST00000432791|KANSL1	ENSG00000120071|ENST00000432791|KANSL1	MULTI-MATCH	A375_MHC_IP_R2	2		2	604.83532	1207.65609	-0.45038	-0.00027241	-0.12055	-7.2912E-05	-0.57093	-0.00034532	604.8350862803212	32.146	0.25578	32.882	32.704	32.96	0.73692	0.035514	-2.282E-05	NaN	6.7232	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2859300			4270	3649	2826	2868							0.060564710805238064
ATTVEEESLY	10	Unmodified	_ATTVEEESLY_					0	0	0			REV__tr|U7SEC4|U7SEC4_FUSNUElongationfactorTsOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tsfPE=3SV=1	REV__tr|U7SEC4|U7SEC4_FUSNUElongationfactorTsOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tsfPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	572.1680908203125	2	571.266601	1140.51865	-0.015488	-8.8479E-06	1.1185	0.00063897	1.103	0.00063012	571.2671986029386	108.56	0.96283	108.56	108	108.97	0					36	18	3	0	0	0	0.51963	1	39798	39798		26.884	9.9414	1	7598300	+		4271	28158	2827	2869	4184	4184					-0.045989023095671655
ATTVIPRVY	9	Unmodified	_ATTVIPRVY_					0	0	0		ENST00000508561.5_1_4:56283240-56284276:+|nuORF;nc|ENSG00000134851|Q9HC07-2|TMEM165;ENST00000508404.5_1_4:56269487-56291616:+|nuORF;ENSG00000134851|ENST00000381334|TMEM165	ENST00000508561.5_1_4:56283240-56284276:+|nuORF	ENST00000508561.5_1_4:56283240-56284276:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	510.45147705078125	2	510.297842	1018.58113	-0.43423	-0.00022158	-0.06762	-3.4507E-05	-0.50185	-0.00025609	510.2977646993986	60.269	0.40806	60.269	60.006	60.414	0					13	7	2	0	0	0	0.4261	1	21709	21709		30.637	11.38	1	1551500			4272	4615	2828	2870	4185	4185					0.07258333339950696
ATTYVHKGLLQ	11	Unmodified	_ATTYVHKGLLQ_					0	0	0		ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	MSMS	A375_MHC_IP_R1	1	410.94317626953125	3	410.89955	1229.67682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.686	1	23.686	23.186	24.186	0								0	0	0	0.16136	1	6556	6556		11.631	0.56609	1				4273	6067	2829	2871	4186	4186					0.07117061460212426
ATTYVHKGLLQ	11	Unmodified	_ATTYVHKGLLQ_					0	0	0		ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	MULTI-MSMS	A375_MHC_IP_R2	2	410.943359375	3	410.89955	1229.67682	-0.33563	-0.00013791	-1.8827	-0.0007736	-2.2183	-0.00091151	410.8983239655037	22.953	0.15346	23.583	23.47	23.623	0.63014					4	2	2	0	0	0	0.72713	1	7282	7282		11.631	3.1871	1	770310			4274	6067	2829	2871	4187	4187					0.07117061460212426
ATVDNWSQIQS	11	Unmodified	_ATVDNWSQIQS_					0	0	0		ENSG00000198203|ENST00000251481|SULT1C2;nc|ENSG00000198203|O00338-2|SULT1C2	ENSG00000198203|ENST00000251481|SULT1C2	ENSG00000198203|ENST00000251481|SULT1C2	MULTI-SECPEP	A375_MHC_IP_R2	2	625.196044921875	2	624.796392	1247.57823	-0.81709	-0.00051052	-0.019263	-1.2035E-05	-0.83636	-0.00052255	624.7964223825854	31.04	0.45821	31.759	31.567	32.026	0.71857					14	8	3	0	0	0	0.9574	1	10989	10989		14.405	0	1	1570300			4275	9242	2830	2872	4188	4188					-0.03565586575518864
ATVDNWSQIQS	11	Unmodified	_ATVDNWSQIQS_					0	0	0		ENSG00000198203|ENST00000251481|SULT1C2;nc|ENSG00000198203|O00338-2|SULT1C2	ENSG00000198203|ENST00000251481|SULT1C2	ENSG00000198203|ENST00000251481|SULT1C2	MULTI-MATCH	A375_MHC_IP_R1	1		2	624.796392	1247.57823	-0.46968	-0.00029345	0.46011	0.00028747	-0.0095712	-5.98E-06	624.7963938691546	31.635	0.35454	31.635	31.465	31.819	0	-0.061813	0.00051883	NaN	14.405	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1195300			4276	9242	2830	2872							-0.03565586575518864
ATVGLIRNL	9	Unmodified	_ATVGLIRNL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-SECPEP	A375_MHC_IP_R1	1	479.19781494140625	2	478.798009	955.581465	-0.84449	-0.00040434	0.55443	0.00026546	-0.29006	-0.00013888	478.7982205212334	68.174	0.55934	68.174	67.904	68.463	0					27	10	3	0	0	0	0.05217	1	24688	24688		79.596	18.239	1	6677400			4277	7257	2831	2873	4189	4189					0.10189753059808027
ATVGRRYLW	9	Unmodified	_ATVGRRYLW_					0	0	0		nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	MULTI-MSMS	A375_MHC_IP_R1	1	374.9453430175781	3	374.545331	1120.61416	0.59136	0.00022149	-0.11602	-4.3453E-05	0.47534	0.00017804	374.545233558571	45.509	0.60574	45.509	45.284	45.89	0					24	11	3	0	0	0	0.13797	1	15918	15918		33.445	9.6551	1	11304000			4278	14568	2832	2874	4190	4190					0.058679601826497674
ATVGRRYLW	9	Unmodified	_ATVGRRYLW_					0	0	0		nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	MULTI-MSMS	A375_MHC_IP_R2	2	374.9452209472656	3	374.545331	1120.61416	0.28177	0.00010554	-0.64205	-0.00024048	-0.36028	-0.00013494	374.5450806812452	44.529	0.50782	45.298	45.035	45.543	0.7691					24	9	3	0	0	0	0.06083	1	16616	16616		47.732	26.142	1	9353900			4279	14568	2832	2874	4191	4191					0.058679601826497674
ATVRLLYKAT	10	Unmodified	_ATVRLLYKAT_					0	0	0			REV__ENSG00000086570|ENST00000261800|FAT2	REV__ENSG00000086570|ENST00000261800|FAT2	MSMS	A375_MHC_IP_R2	2	379.27288818359375	3	379.232641	1134.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.997	1	42.771	42.271	43.271	0.77451								0	0	0	0.15246	1	15610	15610		12.856	2.5407	1		+		4280	16857	2833	2875	4192	4192					0.11414266811129892
ATVSFGKELTR	11	Unmodified	_ATVSFGKELTR_					0	0	0		ENST00000444537.5_1_2:165636273-165698319:-|nuORF	ENST00000444537.5_1_2:165636273-165698319:-|nuORF	ENST00000444537.5_1_2:165636273-165698319:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	605.2348022460938	2	604.83532	1207.65609	-0.30905	-0.00018693	0.31358	0.00018967	0.0045286	2.7391E-06	604.8355354120689	33.839	0.7603	33.839	33.393	34.154	0					37	14	3	0	0	0	0.9881	1	10994	10994		9.544	0	1	17238000			4281	12017	2834	2876	4193	4193					0.060564710805238064
ATVSHNRHWL	10	Unmodified	_ATVSHNRHWL_					0	0	0			REV__ENST00000520252.5_1_14:102695981-102698935:-|nuORF	REV__ENST00000520252.5_1_14:102695981-102698935:-|nuORF	MSMS	A375_MHC_IP_R1	1	610.6987915039062	2	610.817796	1219.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.03	1	104.03	103.53	104.53	0								0	0	0	0.15479	1	38200	38200		5.2969	0	1		+		4282	25692	2835	2877	4194	4194					0.020012730632288367
ATVSSVANSTL	11	Unmodified	_ATVSSVANSTL_					0	0	0			REV__ENST00000528808.1_1_11:60150614-60157189:+|nuORF	REV__ENST00000528808.1_1_11:60150614-60157189:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	525.7046508789062	2	525.277303	1048.54005	-0.27764	-0.00014584	1.3842	0.00072709	1.1066	0.00058126	525.2782890640756	111.64	0.30585	111.64	111.46	111.77	0					7	5	2	0	0	0	0.62292	1	40908	40908		21.537	2.28	1	2953400	+		4283	20718	2836	2878	4195	4195					0.017725275098200655
ATVTRIYNF	9	Unmodified	_ATVTRIYNF_					0	0	0			REV__ENSG00000187554|ENST00000642603|TLR5	REV__ENSG00000187554|ENST00000642603|TLR5	MULTI-SECPEP	A375_MHC_IP_R2	2	362.6289367675781	3	362.197708	1083.57129	-0.37744	-0.00013671	0.47919	0.00017356	0.10175	3.6852E-05	362.19784283836776	49.25	0.2529	50.008	49.843	50.096	0.75737					6	4	2	0	0	0	0.78351	1	18451	18451		2.7352	0	1	425320	+		4284	22028	2837	2879	4196	4196					0.03285145334552908
ATWFVFIRFCW	11	Unmodified	_ATWFVFIRFCW_					0	0	0		ENST00000248071.5_1_19:16438179-16438317:+|nuORF	ENST00000248071.5_1_19:16438179-16438317:+|nuORF	ENST00000248071.5_1_19:16438179-16438317:+|nuORF	MSMS	A375_MHC_IP_R1	1	492.47784423828125	3	492.581276	1474.722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.09	1	51.09	50.59	51.59	0								0	0	0	0.16249	1	18123	18123		2.6312	1.1761	1				4285	10193	2838	2880	4197	4197					0.003625887217140189
ATYIGTSNW	9	Unmodified	_ATYIGTSNW_					0	0	0		ENSG00000105223|ENST00000409735|PLD3;PLD3|p.E423K|1|0.37|ENSG00000105223|chr19:40377867-40377867|G/A|missense_variant	ENSG00000105223|ENST00000409735|PLD3	ENSG00000105223|ENST00000409735|PLD3	MULTI-MSMS	A375_MHC_IP_R1	1	506.74993896484375	2	506.740357	1011.46616	-0.47096	-0.00023866	-0.16487	-8.3544E-05	-0.63583	-0.0003222	506.74017675946016	76.857	0.61171	76.857	76.522	77.133	0					28	11	3	0	0	0	0.021889	1	28055	28055		81.89	32.221	1	8349300			4286	2578	2839	2881	4198	4198					-0.039113958618713696
ATYIKCNILD	10	Unmodified	_ATYIKCNILD_					0	0	0		ADAM29|p.S547L|1|0.38|ENSG00000168594|chr4:174977165-174977165|C/T|missense_variant	ADAM29|p.S547L|1|0.38|ENSG00000168594|chr4:174977165-174977165|C/T|missense_variant	ADAM29|p.S547L|1|0.38|ENSG00000168594|chr4:174977165-174977165|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	577.2389526367188	2	577.299724	1152.5849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.22	1	145.24	144.74	145.74	0.021408								0	0	0	0.15601	1	56704	56704		1.3295	0.63916	1				4287	49	2840	2882	4199	4199					0.014706350514870792
ATYMKPEMW	9	Oxidation (M)	_ATYMKPEM(Oxidation (M))W_		ATYM(0.112)KPEM(0.888)W		ATYM(-9)KPEM(9)W	0	0	1		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	A375_MHC_IP_R1	1	587.1596069335938	2	586.759378	1171.5042	-0.15082	-8.8497E-05	0.19584	0.00011491	0.04502	2.6416E-05	586.7596518027799	51.967	0.56142	51.967	51.625	52.186	0					24	10	3	0	0	0	0.11715	1	18482	18482		47.594	28.337	2	3510100			4288	8551	2841	2883	4200	4200		408;409			-0.07468969263049985
ATYMKPEMW	9	Oxidation (M)	_ATYMKPEM(Oxidation (M))W_		ATYM(0.096)KPEM(0.904)W		ATYM(-9.8)KPEM(9.8)W	0	0	1		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	A375_MHC_IP_R2	2	587.1593627929688	2	586.759378	1171.5042	-0.72225	-0.00042378	0.49037	0.00028773	-0.23187	-0.00013605	586.7594227426927	51.372	0.60756	52.124	51.713	52.321	0.75225					20	11	2	0	0	0	0.073067	1	19313	19313		55.503	33.756	2	3840300			4289	8551	2841	2883	4201	4201		408;409			-0.07468969263049985
ATYMKPEMW	9	Unmodified	_ATYMKPEMW_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-SECPEP	A375_MHC_IP_R1	1	579.1622314453125	2	578.76192	1155.50929	0.11011	6.3726E-05	-0.51765	-0.0002996	-0.40754	-0.00023587	578.7619893742273	69.153	0.40582	69.153	68.869	69.275	0					16	7	3	0	0	0	0.4465	1	25083	25083		31.268	15.421	1	2007100			4290	8551	2841	2884	4202	4202					-0.06224665400441154
ATYMKPEMW	9	Unmodified	_ATYMKPEMW_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-SECPEP	A375_MHC_IP_R2	2	579.1617431640625	2	578.76192	1155.50929	-0.11361	-6.5751E-05	0.32398	0.00018751	0.21038	0.00012176	578.7619155301588	68.378	0.45543	69.113	68.867	69.323	0.73511					15	8	2	0	0	0	0.30925	1	25909	25909		49.554	33.707	1	3308400			4291	8551	2841	2884	4203	4203					-0.06224665400441154
ATYMKPEMW	9	2 Oxidation (M)	_ATYM(Oxidation (M))KPEM(Oxidation (M))W_		ATYM(1)KPEM(1)W		ATYM(70)KPEM(70)W	0	0	2		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-SECPEP	A375_MHC_IP_R1	1	595.1566772460938	2	594.756835	1187.49912	-0.63388	-0.00037701	-1.108	-0.00065897	-1.7418	-0.001036	594.7562037594319	36.536	0.61148	36.536	36.133	36.745	0					22	11	3	0	0	0	0.074405	1	12223	12223		70.332	51.075	1	3303100			4292	8551	2841	2885	4204	4204		408;409			-0.08713273125658816
ATYNEIVTF	9	Unmodified	_ATYNEIVTF_					0	0	0		ENST00000547729.1_1_12:42826097-42826994:-|nuORF;nc|ENSG00000114416|P51114-3|FXR1;nc|ENSG00000114416|P51114-2|FXR1;ENSG00000114416|ENST00000357559|FXR1	ENST00000547729.1_1_12:42826097-42826994:-|nuORF;nc|ENSG00000114416|P51114-3|FXR1	nc|ENSG00000114416|P51114-3|FXR1	MULTI-SECPEP	A375_MHC_IP_R2	2	529.6633911132812	2	529.263665	1056.51278	-0.35983	-0.00019044	-0.77011	-0.00040759	-1.1299	-0.00059803	529.2632298610417	99.38	0.46107	100.14	99.858	100.32	0.75977					13	8	2	0	0	0	0.35487	1	37711	37711		36.127	0	1	2234300			4293	13346;3219	2842	2886	4205	4205					-0.013219560305742561
ATYRIEYNDQL	11	Unmodified	_ATYRIEYNDQL_					0	0	0			REV__ENSG00000147251|ENST00000276202|DOCK11;REV__ENST00000553480.1_1_14:45332201-45332396:-|nuORF	REV__ENSG00000147251|ENST00000276202|DOCK11	MULTI-MSMS	A375_MHC_IP_R1	1	694.2394409179688	2	693.338424	1384.66229	-0.64216	-0.00044523	0.09629	6.6761E-05	-0.54587	-0.00037847	693.840205432174	83.376	0.61099	83.376	83.125	83.736	0					26	11	3	0	0	0	0.67565	1	30542	30542		17.443	3.0373	1	3673000	+		4294	19581;26066	2843	2887	4206	4206					-0.014650554786157954
ATYVFLHTV	9	Unmodified	_ATYVFLHTV_					0	0	0		ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	MSMS	A375_MHC_IP_R1	1	525.703125	2	525.784567	1049.55458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.693	1	78.693	78.193	79.193	0								0	0	0	0.0036235	1	28718	28718		96.285	50.585	1				4295	3840	2844	2888	4207	4207					0.031786444485987886
ATYVFLHTV	9	Unmodified	_ATYVFLHTV_					0	0	0		ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	MULTI-MSMS	A375_MHC_IP_R2	2	525.7022705078125	2	525.784567	1049.55458	-0.47538	-0.00024995	-0.61567	-0.00032371	-1.0911	-0.00057366	525.7842762945899	77.855	0.56347	78.598	78.365	78.929	0.74293					15	10	2	0	0	0	0.05754	1	29587	29587		61.357	21.4	1	4426500			4296	3840	2844	2888	4208	4208					0.031786444485987886
AVAAEGASDTE	11	Unmodified	_AVAAEGASDTE_					0	0	0		nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MULTI-MSMS	A375_MHC_IP_R2	2	511.1766662597656	2	510.727643	1019.44073	-1.0375	-0.0005299	0.88776	0.0004534	-0.14978	-7.6497E-05	510.72818441126026	58.253	0.60797	59.001	58.679	59.287	0.74894					20	11	2	0	0	0	0.67989	1	22105	22105		17.113	3.605	1	4152600			4297	14477	2845	2889	4209	4209					-0.06820915174932907
AVAAVLTQV	9	Unmodified	_AVAAVLTQV_					0	0	0		ENST00000378892.5_1_9:34637493-34637721:-|nuORF;nc|ENSG00000147955|Q99720-4|SIGMAR1;ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-3|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1;nc|ENSG00000147955|Q99720-5|SIGMAR1;nc|ENSG00000147955|Q99720-2|SIGMAR1	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	436.6659240722656	2	436.26601	870.517468	-0.049094	-2.1418E-05	-0.26884	-0.00011728	-0.31793	-0.0001387	436.2660895738008	81.902	0.65726	81.902	81.556	82.214	0					21	12	3	0	0	0	0.015336	1	29942	29942		89.427	34.653	1	2437000			4298	5713	2846	2890	4210	4210					0.0770297290284816
AVAAVLTQV	9	Unmodified	_AVAAVLTQV_					0	0	0		ENST00000378892.5_1_9:34637493-34637721:-|nuORF;nc|ENSG00000147955|Q99720-4|SIGMAR1;ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-3|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1;nc|ENSG00000147955|Q99720-5|SIGMAR1;nc|ENSG00000147955|Q99720-2|SIGMAR1	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	436.6658630371094	2	436.26601	870.517468	-0.38573	-0.00016828	-0.54379	-0.00023724	-0.92953	-0.00040552	436.2659535890588	81.057	0.61013	81.802	81.52	82.13	0.74474					26	11	3	0	0	0	0.018481	1	30777	30777		85.357	33.088	1	3362000			4299	5713	2846	2890	4211	4211					0.0770297290284816
AVAAVLTQV	9	Unmodified	_AVAAVLTQV_					0	0	0		ENST00000378892.5_1_9:34637493-34637721:-|nuORF;nc|ENSG00000147955|Q99720-4|SIGMAR1;ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-3|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1;nc|ENSG00000147955|Q99720-5|SIGMAR1;nc|ENSG00000147955|Q99720-2|SIGMAR1	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	872.8773803710938	1	871.524744	870.517468	-0.67169	-0.0005854	0.19826	0.00017279	-0.47343	-0.00041261	871.5249569059193	81.057	0.35812	81.802	81.622	81.981	0.74474					11	6	2	0	0	0	0.091096	1	30815	30815		52.268	8.4101	1	2555100			4300	5713	2846	2890	4212	4212					0.0770297290284816
AVAAVLTQV	9	Unmodified	_AVAAVLTQV_					0	0	0		ENST00000378892.5_1_9:34637493-34637721:-|nuORF;nc|ENSG00000147955|Q99720-4|SIGMAR1;ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-3|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1;nc|ENSG00000147955|Q99720-5|SIGMAR1;nc|ENSG00000147955|Q99720-2|SIGMAR1	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	871.524744	870.517468	-0.17875	-0.00015579	0.12294	0.00010715	-0.05581	-4.864E-05	871.5249420521998	81.985	0.40584	81.985	81.707	82.113	0	0.091633	-3.8892E-05	NaN	52.268	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2646000			4301	5713	2846	2890							0.0770297290284816
AVADNEDQSY	10	Unmodified	_AVADNEDQSY_					0	0	0			REV__ENSG00000101353|ENST00000343811|MROH8	REV__ENSG00000101353|ENST00000343811|MROH8	MSMS	A375_MHC_IP_R2	2	556.2183227539062	2	556.23055	1110.44655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.49	1	104.25	103.75	104.75	0.76428								0	0	0	0.15283	1	39193	39193		11.64	2.2929	1		+		4302	17165	2847	2891	4213	4213					-0.10425816663268961
AVADSIPDV	9	Unmodified	_AVADSIPDV_					0	0	0		nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MULTI-MSMS	A375_MHC_IP_R1	1	443.63763427734375	2	443.729458	885.444362	-0.043715	-1.9398E-05	0.35298	0.00015663	0.30927	0.00013723	443.72985574073334	57.441	0.45875	57.441	57.159	57.618	0					11	8	2	0	0	0	0.1209	1	20553	20553		46.921	4.8263	1	874380			4303	9947	2848	2892	4214	4214					-0.002942006104262873
AVADSIPDV	9	Unmodified	_AVADSIPDV_					0	0	0		nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MSMS	A375_MHC_IP_R2	2	443.6371765136719	2	443.729458	885.444362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.548	1	57.298	56.798	57.798	0.75015								0	0	0	0.13201	1	21375	21375		32.117	5.2333	1				4304	9947	2848	2892	4215	4215					-0.002942006104262873
AVADTVYRA	9	Unmodified	_AVADTVYRA_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6553649902344	2	483.256174	964.497795	-0.62215	-0.00030066	0.44434	0.00021473	-0.17781	-8.593E-05	483.2561386815224	30.277	0.45657	30.996	30.809	31.266	0.71857					20	8	4	0	0	0	0.31606	1	10711	10711		39.95	0	1	2809400			4305	9204	2849	2893	4216	4216					0.014125968920893683
AVAEIFVQK	9	Unmodified	_AVAEIFVQK_					0	0	0			REV__TOP3A|p.N830Tfs*52|1|0.27|ENSG00000177302|chr17:18278015-18278015|G/-|frameshift_variant	REV__TOP3A|p.N830Tfs*52|1|0.27|ENSG00000177302|chr17:18278015-18278015|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	503.19268798828125	2	502.792392	1003.57023	-0.52059	-0.00026175	1.0633	0.0005346	0.54268	0.00027286	502.7926617227176	101.18	0.35631	101.95	101.8	102.16	0.76428					10	6	2	0	0	0	0.3213	1	38385	38385		46.021	15.796	1	1028800	+		4306	21452	2850	2894	4217	4217					0.06858930965665877
AVAELLQIS	9	Unmodified	_AVAELLQIS_					0	0	0		ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	MULTI-SECPEP	A375_MHC_IP_R1	1	472.1407470703125	2	472.276575	942.538597	-0.45016	-0.0002126	-0.38821	-0.00018334	-0.83837	-0.00039594	472.27640686009505	83.44	0.56056	83.44	83.175	83.736	0					14	10	2	0	0	0	0.62767	1	30497	30497		7.2892	3.6927	1	1463900			4307	1982	2851	2895	4218	4218					0.06502938211713172
AVAELSNSY	9	Unmodified	_AVAELSNSY_					0	0	0			REV__ENSG00000101974|ENST00000682941|ATP11C	REV__ENSG00000101974|ENST00000682941|ATP11C	MULTI-SECPEP	A375_MHC_IP_R1	1	476.67657470703125	2	477.232364	952.450176	-0.72782	-0.00034734	0.096783	4.6188E-05	-0.63104	-0.00030115	477.2323995684463	36.49	0.20215	36.49	36.339	36.541	0					5	3	2	0	0	0	0.74651	1	12232	12232		13.508	0.97634	1	442030	+		4308	17195	2852	2896	4219	4219					-0.02795102098764346
AVAEYDVYVK	10	Unmodified	_AVAEYDVYVK_					0	0	0		HP|p.G387D|1|0.27|ENSG00000257017|chr16:72060829-72060829|G/A|missense_variant	HP|p.G387D|1|0.27|ENSG00000257017|chr16:72060829-72060829|G/A|missense_variant	HP|p.G387D|1|0.27|ENSG00000257017|chr16:72060829-72060829|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	579.1976928710938	2	578.797872	1155.58119	0.0076201	4.4105E-06	0.1099	6.3611E-05	0.11752	6.8022E-05	578.7978607708382	72.194	0.4556	72.194	71.866	72.321	0					14	8	2	0	0	0	0.63381	1	26263	26263		38.176	14.155	1	2711200			4309	14133	2853	2897	4220	4220					0.009622885492717614
AVAEYDVYVK	10	Unmodified	_AVAEYDVYVK_					0	0	0		HP|p.G387D|1|0.27|ENSG00000257017|chr16:72060829-72060829|G/A|missense_variant	HP|p.G387D|1|0.27|ENSG00000257017|chr16:72060829-72060829|G/A|missense_variant	HP|p.G387D|1|0.27|ENSG00000257017|chr16:72060829-72060829|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	579.1976928710938	2	578.797872	1155.58119	-0.49348	-0.00028563	-0.13265	-7.678E-05	-0.62613	-0.00036241	578.7980410844112	71.454	0.55677	72.188	71.908	72.465	0.73421					17	10	2	0	0	0	0.328	1	27093	27093		49.554	18.918	1	3308200			4310	14133	2853	2897	4221	4221					0.009622885492717614
AVALAVILPV	10	Unmodified	_AVALAVILPV_					0	0	0		ENSG00000164010|ENST00000372517|ERMAP	ENSG00000164010|ENST00000372517|ERMAP	ENSG00000164010|ENST00000372517|ERMAP	MULTI-SECPEP	A375_MHC_IP_R2	2	964.878662109375	1	965.63938	964.632104	-0.083346	-8.0482E-05	4.4776	0.0043238	4.3943	0.0042433	965.6468967208244	122.87	0.25457	123.25	123.07	123.33	0.3766					5	4	2	0	0	0	0.93404	1	47078	47078		1.8442	0	1	11294000			4311	6758	2854	2898	4222	4222					0.1483728238480353
AVALDTLLY	9	Unmodified	_AVALDTLLY_					0	0	0		ENSG00000105784|ENST00000394654|RUNDC3B;nc|ENSG00000105784|Q96NL0|RUNDC3B	ENSG00000105784|ENST00000394654|RUNDC3B	ENSG00000105784|ENST00000394654|RUNDC3B	MULTI-MSMS	A375_MHC_IP_R1	1	980.5573120117188	1	978.550625	977.543348	-0.1387	-0.00013573	0.56411	0.00055201	0.4254	0.00041628	978.5506727263654	135.72	0.25487	135.72	135.64	135.9	0					10	4	3	0	0	0	0.50735	1	52314	52314		19.439	4.8573	1	5538400			4312	2638	2855	2899	4223	4223					0.05367822354469354
AVALYGGH	8	Unmodified	_AVALYGGH_					0	0	0		nc|ENSG00000002726|P19801-2|AOC1;ENSG00000002726|ENST00000360937|AOC1	nc|ENSG00000002726|P19801-2|AOC1	nc|ENSG00000002726|P19801-2|AOC1	MSMS	A375_MHC_IP_R1	1	394.1453552246094	2	394.208495	786.402438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.047	1	46.047	45.547	46.547	0								0	0	0	0.16876	1	16139	16139		11.114	0.93107	1				4313	14446	2856	2900	4224	4224					0.0006928849171572438
AVANIVNSV	9	Unmodified	_AVANIVNSV_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-SECPEP	A375_MHC_IP_R1	1	444.1533508300781	2	443.753267	885.491981	-0.1401	-6.2169E-05	0.38132	0.00016921	0.24122	0.00010704	443.753434056092	68.596	0.45748	68.596	68.361	68.819	0					17	8	3	0	0	0	0.096726	1	24867	24867		52.268	14.294	1	3534700			4314	1172	2857	2901	4225	4225					0.04465498380432109
AVANIVNSV	9	Unmodified	_AVANIVNSV_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-MSMS	A375_MHC_IP_R2	2	443.69171142578125	2	443.753267	885.491981	-0.30547	-0.00013555	0.20875	9.2633E-05	-0.096725	-4.2922E-05	443.7533409805887	67.8	0.56092	68.535	68.255	68.816	0.73511					16	10	2	0	0	0	0.32899	1	25640	25640		28.487	8.0332	1	3166300			4315	1172	2857	2901	4226	4226					0.04465498380432109
AVAPGHFLW	9	Unmodified	_AVAPGHFLW_					0	0	0		nc|ENSG00000067182|P19438-4|TNFRSF1A	nc|ENSG00000067182|P19438-4|TNFRSF1A	nc|ENSG00000067182|P19438-4|TNFRSF1A	MULTI-SECPEP	A375_MHC_IP_R1	1	499.71331787109375	2	499.266345	996.518136	-0.54397	-0.00027159	0.60831	0.00030371	0.064338	3.2122E-05	499.26624336495314	90.25	0.40532	90.25	90.032	90.437	0					13	7	3	0	0	0	0.64653	1	33220	33220		20.871	6.9652	1	700030			4316	14474	2858	2902	4227	4227					0.019738123425668164
AVAPGPWKV	9	Unmodified	_AVAPGPWKV_					0	0	0		nc|ENSG00000187391|Q86UL8-2|MAGI2;ENSG00000187391|ENST00000354212|MAGI2	nc|ENSG00000187391|Q86UL8-2|MAGI2	nc|ENSG00000187391|Q86UL8-2|MAGI2	MULTI-SECPEP	A375_MHC_IP_R1	1	463.16864013671875	2	462.76872	923.522887	-0.30991	-0.00014342	1.019	0.00047158	0.70914	0.00032817	462.7691331749315	58.749	0.60916	58.749	58.278	58.887	0					23	11	3	0	0	0	0.47368	1	21100	21100		26.884	2.2098	1	3667000			4317	8823	2859	2903	4228	4228					0.05806696485319662
AVAPGPWKV	9	Unmodified	_AVAPGPWKV_					0	0	0		nc|ENSG00000187391|Q86UL8-2|MAGI2;ENSG00000187391|ENST00000354212|MAGI2	nc|ENSG00000187391|Q86UL8-2|MAGI2	nc|ENSG00000187391|Q86UL8-2|MAGI2	MULTI-SECPEP	A375_MHC_IP_R2	2	463.1684875488281	2	462.76872	923.522887	-0.81526	-0.00037728	1.2227	0.00056582	0.40742	0.00018854	462.769049155666	57.848	0.65871	58.597	58.17	58.829	0.74894					25	12	4	0	0	0	0.3607	1	21865	21865		34.102	5.9292	1	3629600			4318	8823	2859	2903	4229	4229					0.05806696485319662
AVAPQVPAL	9	Unmodified	_AVAPQVPAL_					0	0	0		ENST00000527247.5_1_11:126099171-126110978:+|nuORF;ENSG00000197798|ENST00000533050|FAM118B	ENST00000527247.5_1_11:126099171-126110978:+|nuORF	ENST00000527247.5_1_11:126099171-126110978:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	433.6605224609375	2	433.260728	864.506903	-0.25388	-0.00011	0.011863	5.1397E-06	-0.24202	-0.00010486	433.26073649623817	82.731	0.75804	83.474	83.093	83.851	0.74293					23	14	2	0	0	0	0.021919	1	31437	31437		81.864	11	1	1758900			4319	9196	2860	2904	4230	4230					0.06922990248415317
AVAPQVPAL	9	Unmodified	_AVAPQVPAL_					0	0	0		ENST00000527247.5_1_11:126099171-126110978:+|nuORF;ENSG00000197798|ENST00000533050|FAM118B	ENST00000527247.5_1_11:126099171-126110978:+|nuORF	ENST00000527247.5_1_11:126099171-126110978:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	433.260728	864.506903	-0.22142	-9.5931E-05	0.091788	3.9768E-05	-0.12963	-5.6163E-05	433.2607102382419	83.544	0.66	83.544	83.277	83.937	0	0.034887	3.1056E-05	NaN	81.864	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1479300			4320	9196	2860	2904							0.06922990248415317
AVAQTFEKI	9	Unmodified	_AVAQTFEKI_					0	0	0		LIG1|p.R294Q|1|0.15|ENSG00000105486|chr19:48143576-48143576|C/T|missense_variant	LIG1|p.R294Q|1|0.15|ENSG00000105486|chr19:48143576-48143576|C/T|missense_variant	LIG1|p.R294Q|1|0.15|ENSG00000105486|chr19:48143576-48143576|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	503.6695556640625	2	503.782025	1005.5495	-0.56701	-0.00028565	-2.4325	-0.0012255	-2.9995	-0.0015111	503.78194818634114	43.103	0.81103	43.875	43.369	44.181	0.7724					20	15	2	0	0	0	0.69504	1	16169	16169		4.3292	0	1	1282100			4321	14297	2861	2905	4231	4231					0.04694340585979262
AVARARVLLL	10	Unmodified	_AVARARVLLL_					0	0	0		CHRD|p.S190L|1|0.5|ENSG00000090539|chr3:184381773-184381773|C/T|missense_variant	CHRD|p.S190L|1|0.5|ENSG00000090539|chr3:184381773-184381773|C/T|missense_variant	CHRD|p.S190L|1|0.5|ENSG00000090539|chr3:184381773-184381773|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	1082.3963623046875	1	1081.72042	1080.71315	-0.24502	-0.00026504	4.3677	0.0047246	4.1227	0.0044596	1081.7209319235026	124.44	0.15071	124.44	124.34	124.49	0					4	2	2	0	0	0	0.92957	1	46825	46825		3.2813	0	1	18833000			4322	514	2862	2906	4232	4232					0.17601983147574174
AVARAVYQ	8	Unmodified	_AVARAVYQ_					0	0	0		ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF	ENST00000522480.5_1_16:21475086-21478634:-|nuORF	ENST00000522480.5_1_16:21475086-21478634:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	439.6746520996094	2	439.248152	876.481751	-0.4764	-0.00020926	1.2604	0.00055364	0.78403	0.00034438	439.2482633128146	50.396	0.25403	51.15	51.006	51.26	0.75406					6	4	2	0	0	0	0.91495	1	18990	18990		7.9102	2.6795	1	398870			4323	10614	2863	2907	4233	4233					0.03856935445844556
AVASAASAGP	10	Unmodified	_AVASAASAGP_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MSMS	A375_MHC_IP_R2	2	401.1527404785156	2	401.208692	800.402832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.383	1	33.12	32.62	33.62	0.73692								0	0	0	0.15256	1	11523	11523		12.532	1.4171	1				4324	6011	2864	2908	4234	4234					-0.005353365791052056
AVASKEDSW	9	Unmodified	_AVASKEDSW_					0	0	0		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	MULTI-MSMS	A375_MHC_IP_R1	1	496.6767883300781	2	496.737814	991.461075	-0.63337	-0.00031462	0.45279	0.00022492	-0.18058	-8.97E-05	496.73810556027763	26.903	0.50149	26.903	26.728	27.229	0					10	9	2	0	0	0	0.2002	1	8055	8055		37.974	3.8716	1	3440800			4325	2789	2865	2909	4235	4235					-0.03499699724477523
AVASLGPDGV	10	Unmodified	_AVASLGPDGV_					0	0	0			REV__ENST00000300682.14_2_17:77082467-77082989:+|nuORF	REV__ENST00000300682.14_2_17:77082467-77082989:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	443.63763427734375	2	443.23745	884.460347	-0.049957	-2.2143E-05	0.021787	9.6569E-06	-0.02817	-1.2486E-05	443.23742474553393	57.441	0.81424	57.441	57.059	57.873	0					31	15	4	0	0	0	0.61429	1	20553	20553		37.974	15.238	1	11259000	+		4326	23414	2866	2910	4236	4236					0.013495056264787308
AVASLGPDGV	10	Unmodified	_AVASLGPDGV_					0	0	0			REV__ENST00000300682.14_2_17:77082467-77082989:+|nuORF	REV__ENST00000300682.14_2_17:77082467-77082989:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	443.6789855957031	2	443.23745	884.460347	-0.76603	-0.00033953	0.32971	0.00014614	-0.43632	-0.00019339	443.23753436147246	56.574	0.91866	57.324	57.051	57.969	0.75015					41	17	4	0	0	0	0.024589	1	21409	21409		92.822	21.689	1	9635100	+		4327	23414	2866	2910	4237	4237					0.013495056264787308
AVASSTIGIV	10	Unmodified	_AVASSTIGIV_					0	0	0		ENSG00000158158|ENST00000377075|CNNM4	ENSG00000158158|ENST00000377075|CNNM4	ENSG00000158158|ENST00000377075|CNNM4	MULTI-SECPEP	A375_MHC_IP_R1	1	458.67889404296875	2	459.26875	916.522947	-0.21271	-9.7692E-05	0.3495	0.00016051	0.13678	6.2821E-05	459.26887894735273	103.95	1.6768	103.95	103.47	105.15	0					85	32	4	0	0	0	0.073604	1	38148	38148		74.423	14.349	1	86823000			4328	6290	2867	2911	4238	4238					0.06134651694662807
AVATFLQSV	9	Unmodified	_AVATFLQSV_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-SECPEP	A375_MHC_IP_R1	1	467.6331787109375	2	468.263468	934.512382	-0.27494	-0.00012875	0.17145	8.0286E-05	-0.10349	-4.8459E-05	468.263588661461	103.35	0.86394	103.35	103.06	103.93	0					34	16	3	0	0	0	0.60012	1	37909	37909		24.674	8.9057	1	4038600			4329	4297	2868	2912	4239	4239					0.04250669040243338
AVATFLQSV	9	Unmodified	_AVATFLQSV_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	A375_MHC_IP_R2	2	468.6631164550781	2	468.263468	934.512382	-0.62304	-0.00029175	0.099268	4.6483E-05	-0.52377	-0.00024526	468.2635165298958	102.44	0.86426	103.2	102.82	103.68	0.76428					36	16	3	0	0	0	0.01001	1	38797	38797		123.45	58.216	1	5374300			4330	4297	2868	2912	4240	4240					0.04250669040243338
AVATNRGSSL	10	Unmodified	_AVATNRGSSL_					0	0	0		ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6	ENSG00000163029|ENST00000448223|SMC6	ENSG00000163029|ENST00000448223|SMC6	MULTI-SECPEP	A375_MHC_IP_R2	2	488.46917724609375	2	488.26453	974.514508	-0.70069	-0.00034212	1.4315	0.00069897	0.73084	0.00035685	488.2653265796089	44.879	0.3084	45.648	45.492	45.8	0.7691					8	5	2	0	0	0	0.91442	1	16775	16775		2.2828	0	1	1223400			4331	6624	2869	2913	4241	4241					0.026230977780642206
AVAVTTAHTL	10	Unmodified	_AVAVTTAHTL_					0	0	0			REV__nc|ENSG00000139445|Q96NZ1-3|FOXN4	REV__nc|ENSG00000139445|Q96NZ1-3|FOXN4	MULTI-SECPEP	A375_MHC_IP_R1	1	492.6798400878906	2	492.279649	982.544745	-0.6688	-0.00032924	0.63735	0.00031376	-0.03145	-1.5482E-05	492.2799843624641	67.424	0.5594	67.424	67.245	67.804	0					16	10	2	0	0	0	0.85226	1	24441	24441		14.838	0.93222	1	2742100	+		4332	19158	2870	2914	4242	4242					0.05277456443241135
AVAYKQPIHH	10	Unmodified	_AVAYKQPIHH_					0	0	0		ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;DMXL2|p.T2022Hfs*16|1|0.5|ENSG00000104093|chr15:51481042-51481042|T/-|frameshift_variant;DMXL2|p.I1754Lfs*19|1|0.32|ENSG00000104093|chr15:51486296-51486296|A/-|frameshift_variant	ENSG00000104093|ENST00000560891|DMXL2	ENSG00000104093|ENST00000560891|DMXL2	MULTI-MSMS	A375_MHC_IP_R1	1	388.9413146972656	3	388.548852	1162.62473	0.23032	8.949E-05	-0.10311	-4.0064E-05	0.12721	4.9426E-05	388.5487880124974	46.198	0.50334	46.198	45.992	46.495	0					22	9	3	0	0	0	0.71944	1	16252	16252		1.7423	0	1	2783500			4333	2485	2871	2915	4243	4243					0.04991942837091301
AVAYKQPIHH	10	Unmodified	_AVAYKQPIHH_					0	0	0		ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;DMXL2|p.T2022Hfs*16|1|0.5|ENSG00000104093|chr15:51481042-51481042|T/-|frameshift_variant;DMXL2|p.I1754Lfs*19|1|0.32|ENSG00000104093|chr15:51486296-51486296|A/-|frameshift_variant	ENSG00000104093|ENST00000560891|DMXL2	ENSG00000104093|ENST00000560891|DMXL2	MULTI-SECPEP	A375_MHC_IP_R1	1	388.27703857421875	3	388.548852	1162.62473	0.35554	0.00013815	-0.29027	-0.00011278	0.065277	2.5363E-05	388.54862945189643	51.562	0.81456	51.562	51.27	52.085	0					36	12	4	0	0	0	0.9269	1	18382	18382		6.1918	3.1196	1	10284000			4334	2485	2871	2915	4244	4244					0.04991942837091301
AVCEPSQA	8	Unmodified	_AVCEPSQA_					0	0	0		ENST00000558767.5_1_15:80445344-80452198:+|nuORF	ENST00000558767.5_1_15:80445344-80452198:+|nuORF	ENST00000558767.5_1_15:80445344-80452198:+|nuORF	MSMS	A375_MHC_IP_R2	2	402.5798645019531	2	402.681453	803.348354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.589	1	66.327	65.827	66.827	0.73811								0	0	0	0.16876	1	24867	24867		4.756	0	1				4335	13472	2872	2916	4245	4245					-0.061186717221630715
AVCFDNGRC	9	Unmodified	_AVCFDNGRC_					0	0	0		nc|ENSG00000118965|Q9P2L0|WDR35;ENSG00000118965|ENST00000281405|WDR35	nc|ENSG00000118965|Q9P2L0|WDR35	nc|ENSG00000118965|Q9P2L0|WDR35	MULTI-MSMS	A375_MHC_IP_R2	2	986.306396484375	1	984.402597	983.39532	-0.0019764	-1.9456E-06	2.1631	0.0021294	2.1611	0.0021274	984.4068316796155	121.02	1.0137	121.47	121.17	122.18	0.44488					36	19	3	0	0	0	0.72507	1	46150	46150		4.756	1.8668	1	89933000			4336	3566	2873	2917	4246	4246					-0.09704135442677853
AVDCYVEY	8	Unmodified	_AVDCYVEY_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	A375_MHC_IP_R1	1	481.6950988769531	2	481.202218	960.389884	-0.39024	-0.00018779	-2.7669	-0.0013314	-3.1571	-0.0015192	481.2020295195315	96.044	0.45674	96.044	95.817	96.274	0					12	8	2	0	0	0	0.75322	1	35368	35368		19.439	5.9311	1	739810	+		4337	22046	2874	2918	4247	4247					-0.09189535753500877
AVDCYVEY	8	Unmodified	_AVDCYVEY_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	A375_MHC_IP_R1	1	480.7750244140625	2	481.202218	960.389884	-0.39024	-0.00018779	-2.7669	-0.0013314	-3.1571	-0.0015192	481.2020295195315	96.044	0.45674	96.044	95.817	96.274	0					12	8	2	0	0	0	0.94479	1	35243	35243		19.439	9.3651	1	739810	+		4338	22046	2874	2918	4248	4248					-0.09189535753500877
AVDCYVEY	8	Unmodified	_AVDCYVEY_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	A375_MHC_IP_R2	2	481.695068359375	2	481.202218	960.389884	-0.3562	-0.00017141	-1.8814	-0.00090535	-2.2376	-0.0010768	481.2018774508312	95.382	0.51104	96.133	95.735	96.246	0.75045					11	9	2	0	0	0	0.75322	1	36165	36165		19.439	4.6007	1	598390	+		4339	22046	2874	2918	4249	4249					-0.09189535753500877
AVDCYVEY	8	Unmodified	_AVDCYVEY_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	481.202218	960.389884	-0.3562	-0.00017141	-1.8814	-0.00090535	-2.2376	-0.0010768	481.2018774508312	95.382	0.51104	96.133	95.735	96.246	0.75045	0.044559	0.00045245	NaN	19.439	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	598390	+		4340	22046	2874	2918							-0.09189535753500877
AVDFAERHGY	10	Unmodified	_AVDFAERHGY_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF;ENST00000528296.5_1_8:146015816-146017457:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	A375_MHC_IP_R1	1	582.7303466796875	2	582.775262	1163.53597	-0.54006	-0.00031473	0.75385	0.00043933	0.2138	0.00012459	582.775169694075	30.675	0.40453	30.675	30.453	30.857	0					18	7	3	0	0	0	0.66308	1	9842	9842		16.149	5.3252	1	2127500			4341	6459	2875	2919	4250	4250					-0.03925517193238193
AVDFAERHGY	10	Unmodified	_AVDFAERHGY_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF;ENST00000528296.5_1_8:146015816-146017457:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-SECPEP	A375_MHC_IP_R1	1	389.25238037109375	3	388.8526	1163.53597	-0.11851	-4.6082E-05	0.34383	0.0001337	0.22532	8.7616E-05	388.85270518718573	30.627	0.65685	30.627	30.402	31.059	0					31	12	4	0	0	0	0.81668	1	9753	9753		21.799	13.644	1	5448700			4342	6459	2875	2919	4251	4251					-0.03925517193238193
AVDFAERHGY	10	Unmodified	_AVDFAERHGY_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF;ENST00000528296.5_1_8:146015816-146017457:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-SECPEP	A375_MHC_IP_R2	2	389.2526550292969	3	388.8526	1163.53597	-0.44807	-0.00017423	0.55579	0.00021612	0.10772	4.1887E-05	388.85286938410667	29.94	0.60908	30.638	30.485	31.094	0.69872					23	11	3	0	0	0	0.65827	1	10504	10504		21.799	14.762	1	5790100			4343	6459	2875	2919	4252	4252					-0.03925517193238193
AVDFAERHGY	10	Unmodified	_AVDFAERHGY_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF;ENST00000528296.5_1_8:146015816-146017457:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-SECPEP	A375_MHC_IP_R2	2	583.1568603515625	2	582.775262	1163.53597	-0.68306	-0.00039807	0.89495	0.00052155	0.21188	0.00012348	582.7754667389307	29.99	0.35534	30.689	30.485	30.84	0.69872					10	6	2	0	0	0	0.51228	1	10538	10538		28.495	9.2375	1	1456700			4344	6459	2875	2919	4253	4253					-0.03925517193238193
AVDFIRTL	8	Unmodified	_AVDFIRTL_					0	0	0		ENSG00000164543|ENST00000319357|STK17A;STK17A|p.E292Q|1|0.2|ENSG00000164543|chr7:43623842-43623842|G/C|missense_variant	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	MULTI-SECPEP	A375_MHC_IP_R1	1	468.1712646484375	2	467.77146	933.528367	-0.11863	-5.5493E-05	0.070814	3.3125E-05	-0.047818	-2.2368E-05	467.77142535196435	82.388	0.45814	82.388	82.163	82.622	0					18	8	3	0	0	0	0.68299	1	30135	30135		36.506	12.486	1	2906200			4345	6849	2876	2920	4254	4254					0.05894375277148356
AVDFIRTL	8	Unmodified	_AVDFIRTL_					0	0	0		ENSG00000164543|ENST00000319357|STK17A;STK17A|p.E292Q|1|0.2|ENSG00000164543|chr7:43623842-43623842|G/C|missense_variant	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	MULTI-SECPEP	A375_MHC_IP_R2	2	468.1291198730469	2	467.77146	933.528367	-0.71316	-0.0003336	0.2036	9.5237E-05	-0.50956	-0.00023836	467.77152271417947	81.461	0.45242	82.204	81.979	82.431	0.74293					14	8	2	0	0	0	0.72637	1	30920	30920		47.749	11.704	1	2996300			4346	6849	2876	2920	4255	4255					0.05894375277148356
AVDFQFSKGAV	11	Unmodified	_AVDFQFSKGAV_					0	0	0		ENSG00000162337|ENST00000294304|LRP5	ENSG00000162337|ENST00000294304|LRP5	ENSG00000162337|ENST00000294304|LRP5	MULTI-MSMS	A375_MHC_IP_R1	1	390.12652587890625	3	390.204751	1167.59242	-0.11187	-4.3651E-05	0.14691	5.7324E-05	0.035041	1.3673E-05	390.2047026974858	41.249	0.50633	41.249	40.913	41.419	0					12	9	2	0	0	0	0.60747	1	14245	14245		13.519	1.8873	1	1008900			4347	6518	2877	2921	4256	4256					0.01533110643413238
AVDFQRRY	8	Unmodified	_AVDFQRRY_					0	0	0		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MSMS	A375_MHC_IP_R2	2	352.21221923828125	3	352.185802	1053.53558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.587	1	91.321	90.821	91.821	0.7345								0	0	0	0.16876	1	34467	34467		4.3292	0	1				4348	3223	2878	2922	4257	4257					0.010951078775633505
AVDGIIKVW	9	Unmodified	_AVDGIIKVW_					0	0	0		ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	MULTI-SECPEP	A375_MHC_IP_R2	2	500.4747619628906	2	500.794935	999.575317	-0.49679	-0.00024879	-0.1059	-5.3033E-05	-0.60269	-0.00030182	500.7948860091048	87.617	0.65663	88.349	88.066	88.722	0.7318					19	12	2	0	0	0	0.3213	1	33284	33284		46.021	19.137	1	1938600			4349	5397	2879	2923	4258	4258					0.07551234828281395
AVDGSIIRY	9	Unmodified	_AVDGSIIRY_					0	0	0			REV__ENSG00000086570|ENST00000261800|FAT2	REV__ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	A375_MHC_IP_R1	1	497.1610412597656	2	497.271824	992.529095	-0.26947	-0.000134	-0.48447	-0.00024091	-0.75394	-0.00037491	497.2717264024202	44.139	0.71413	44.139	43.706	44.42	0					22	13	2	0	0	0	0.37663	1	15461	15461		43.772	3.5332	1	10267000	+		4350	16857	2880	2924	4259	4259					0.03253169926199462
AVDPAFAERY	10	Unmodified	_AVDPAFAERY_					0	0	0		nc|ENSG00000196923|Q9NR12-2|PDLIM7;ENST00000486828.6_1_5:176910647-176917003:-|nuORF;ENSG00000196923|ENST00000355841|PDLIM7	nc|ENSG00000196923|Q9NR12-2|PDLIM7	nc|ENSG00000196923|Q9NR12-2|PDLIM7	MULTI-MSMS	A375_MHC_IP_R1	1	570.179443359375	2	569.780013	1137.54547	-0.36912	-0.00021032	-0.24444	-0.00013928	-0.61357	-0.0003496	569.779853559901	52.464	0.5089	52.464	52.287	52.796	0					12	9	2	0	0	0	0.31523	2	18690	18654;18690		39.213	39.213	1	3154200			4351	14842	2881	2925	4260;4261	4261					-0.017797489077111095
AVDPAFAERY	10	Unmodified	_AVDPAFAERY_					0	0	0		nc|ENSG00000196923|Q9NR12-2|PDLIM7;ENST00000486828.6_1_5:176910647-176917003:-|nuORF;ENSG00000196923|ENST00000355841|PDLIM7	nc|ENSG00000196923|Q9NR12-2|PDLIM7	nc|ENSG00000196923|Q9NR12-2|PDLIM7	MULTI-MSMS	A375_MHC_IP_R2	2	570.179443359375	2	569.780013	1137.54547	-0.62054	-0.00035357	-0.24861	-0.00014165	-0.86915	-0.00049522	569.7798145512476	51.837	0.45978	52.589	52.372	52.831	0.75225					17	8	3	0	0	0	0.21482	2	19536	19456;19536		47.732	32.483	1	1831200			4352	14842	2881	2925	4262;4263	4263					-0.017797489077111095
AVDPASYLV	9	Unmodified	_AVDPASYLV_					0	0	0		ENST00000474430.5_1_1:155151285-155154671:+|nuORF;ENST00000468878.1_1_1:155151285-155156663:+|nuORF;nc|ENSG00000163462|Q7Z4K8-5|TRIM46;ENSG00000163462|ENST00000334634|TRIM46	ENST00000474430.5_1_1:155151285-155154671:+|nuORF	ENST00000474430.5_1_1:155151285-155154671:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	468.14794921875	2	467.74765	933.480748	-0.27563	-0.00012892	0.24621	0.00011516	-0.029421	-1.3762E-05	467.7476891829671	100.32	0.65968	100.32	99.975	100.63	0					20	12	2	0	0	0	0.022213	1	36869	36869		81.613	30.758	1	1895200			4353	6665	2882	2926	4264	4264					0.011346762862899595
AVDPGLLGY	9	Unmodified	_AVDPGLLGY_					0	0	0		ENSG00000111676|ENST00000396684|ATN1	ENSG00000111676|ENST00000396684|ATN1	ENSG00000111676|ENST00000396684|ATN1	MULTI-MSMS	A375_MHC_IP_R1	1	453.14202880859375	2	452.742368	903.470183	-0.20148	-9.1218E-05	0.58816	0.00026629	0.38669	0.00017507	452.74254015337266	95.993	0.55846	95.993	95.817	96.376	0					18	10	2	0	0	0	0.067501	1	35281	35281		57.471	15.377	1	3369800			4354	3015	2883	2927	4265	4265					0.014586936318664812
AVDPGLLGY	9	Unmodified	_AVDPGLLGY_					0	0	0		ENSG00000111676|ENST00000396684|ATN1	ENSG00000111676|ENST00000396684|ATN1	ENSG00000111676|ENST00000396684|ATN1	MULTI-SECPEP	A375_MHC_IP_R1	1	904.8093872070312	1	904.47746	903.470183	-0.16105	-0.00014567	0.38926	0.00035208	0.2282	0.00020641	904.4777718602063	96.095	1.0157	96.095	95.665	96.68	0					50	19	3	0	0	0	0.0088186	1	35339	35339		137.59	55.721	1	65366000			4355	3015	2883	2927	4266	4266					0.014586936318664812
AVDPGLLGY	9	Unmodified	_AVDPGLLGY_					0	0	0		ENSG00000111676|ENST00000396684|ATN1	ENSG00000111676|ENST00000396684|ATN1	ENSG00000111676|ENST00000396684|ATN1	MULTI-MSMS	A375_MHC_IP_R2	2	453.1422424316406	2	452.742368	903.470183	-0.045862	-2.0763E-05	0.1329	6.0169E-05	0.087038	3.9406E-05	452.7423082491628	95.268	0.66325	96.019	95.735	96.398	0.75045					28	12	3	0	0	0	0.03063	1	36195	36195		74.423	23.568	1	3281800			4356	3015	2883	2927	4267	4267					0.014586936318664812
AVDPGLLGY	9	Unmodified	_AVDPGLLGY_					0	0	0		ENSG00000111676|ENST00000396684|ATN1	ENSG00000111676|ENST00000396684|ATN1	ENSG00000111676|ENST00000396684|ATN1	MULTI-MATCH	A375_MHC_IP_R2	2		1	904.47746	903.470183	-0.20493	-0.00018536	0.23608	0.00021353	0.031147	2.8171E-05	904.4776797809084	95.321	1.1709	96.071	95.583	96.754	0.75045	-0.011852	-5.1568E-05	NaN	137.59	52	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57396000			4357	3015	2883	2927							0.014586936318664812
AVDPRFLAY	9	Unmodified	_AVDPRFLAY_					0	0	0		ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	ENSG00000100888|ENST00000646647|CHD8	ENSG00000100888|ENST00000646647|CHD8	MULTI-MSMS	A375_MHC_IP_R1	1	526.04345703125	2	526.282192	1050.54983	-0.35624	-0.00018748	-1.3485	-0.00070969	-1.7047	-0.00089717	526.2810987076031	78.268	1.4237	78.268	77.537	78.96	0					49	27	4	0	0	0	0.056914	1	28575	28575		61.602	33.115	1	16470000			4358	2228	2884	2928	4268	4268					0.026577603058285604
AVDPTSGQLY	10	Unmodified	_AVDPTSGQLY_					0	0	0		ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1583862304688	2	525.758746	1049.50294	-0.77341	-0.00040663	-0.43691	-0.00022971	-1.2103	-0.00063634	525.7586583666202	60.948	1.6211	61.693	60.751	62.372	0.74503					62	31	3	0	0	0	0.050206	1	23007	23007		96.367	16.77	1	38646000			4359	4379	2885	2929	4269	4269					-0.01983144035943951
AVDRYLRVKL	10	Unmodified	_AVDRYLRVKL_					0	0	0		ENSG00000282608|ENST00000241356|ADORA3;ENSG00000121933|ENST00000369716|TMIGD3	ENSG00000282608|ENST00000241356|ADORA3	ENSG00000282608|ENST00000241356|ADORA3	MULTI-MSMS	A375_MHC_IP_R1	1	411.89111328125	3	411.587307	1231.74009	-0.26127	-0.00010754	0.036496	1.5021E-05	-0.22478	-9.2516E-05	411.5872591299715	41.546	0.51078	41.546	41.215	41.725	0					16	9	2	0	0	0	0.70972	1	14218	14218		7.9454	0	1	3865300			4360	3751	2886	2930	4270	4270					0.13349046968073708
AVDRYLRVKL	10	Unmodified	_AVDRYLRVKL_					0	0	0		ENSG00000282608|ENST00000241356|ADORA3;ENSG00000121933|ENST00000369716|TMIGD3	ENSG00000282608|ENST00000241356|ADORA3	ENSG00000282608|ENST00000241356|ADORA3	MULTI-MSMS	A375_MHC_IP_R2	2	411.8908996582031	3	411.587307	1231.74009	-0.057985	-2.3866E-05	-0.043309	-1.7825E-05	-0.10129	-4.1691E-05	411.5872950548568	40.39	0.40557	41.164	40.98	41.386	0.77451					17	7	3	0	0	0	0.62871	1	14937	14937		18.721	0	1	5713000			4361	3751	2886	2930	4271	4271					0.13349046968073708
AVDSLRQLSM	10	Unmodified	_AVDSLRQLSM_					0	0	0		ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-SECPEP	A375_MHC_IP_R2	2	560.6935424804688	2	560.294973	1118.57539	-0.51726	-0.00028982	-0.3918	-0.00021952	-0.90906	-0.00050934	560.7967880940862	109.68	0.86353	110.43	109.93	110.79	0.74684					46	15	4	0	0	0	0.75488	1	41345	41345		23.79	0	1	3670600			4362	1420;3881	2887	2931	4272	4272					0.020848667659493003
AVDSQITSL	9	Unmodified	_AVDSQITSL_					0	0	0		TBC1D25|p.P58S|1|0.12|ENSG00000068354|chrX:48541381-48541381|C/T|missense_variant	TBC1D25|p.P58S|1|0.12|ENSG00000068354|chrX:48541381-48541381|C/T|missense_variant	TBC1D25|p.P58S|1|0.12|ENSG00000068354|chrX:48541381-48541381|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	467.64764404296875	2	467.248015	932.481476	-0.27319	-0.00012765	0.05179	2.4199E-05	-0.2214	-0.00010345	467.24822172115506	75.035	0.60783	75.035	74.604	75.211	0					15	11	2	0	0	0	0.53748	1	27369	27369		24.021	0	1	866610			4363	29303	2888	2932	4273	4273					0.012534709353303697
AVDSTVKVW	9	Unmodified	_AVDSTVKVW_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-SECPEP	A375_MHC_IP_R1	1	503.173828125	2	502.7742	1003.53385	-0.25141	-0.0001264	0.19071	9.5886E-05	-0.060696	-3.0516E-05	502.7741824129603	56.321	0.65915	56.321	55.991	56.65	0					20	12	2	0	0	0	0.03341	1	20184	20184		93.166	62.529	1	3600100			4364	4341	2889	2933	4274	4274					0.032220540689422705
AVDSTVKVW	9	Unmodified	_AVDSTVKVW_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1737060546875	2	502.7742	1003.53385	-0.72046	-0.00036223	0.14616	7.3487E-05	-0.5743	-0.00028874	502.77417722203495	55.507	0.96545	56.258	55.933	56.898	0.75075					26	18	3	0	0	0	0.0575	1	20974	20974		86.332	40.311	1	3817700			4365	4341	2889	2933	4275	4275					0.032220540689422705
AVDTGRVLY	9	Unmodified	_AVDTGRVLY_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	A375_MHC_IP_R2	2	497.1611328125	2	497.271824	992.529095	-0.35269	-0.00017538	-0.24926	-0.00012395	-0.60194	-0.00029933	497.2717370964139	43.332	0.75946	44.105	43.623	44.383	0.7724					23	14	2	0	0	0	0.33896	1	16192	16192		47.594	12.662	1	10988000			4366	7807	2890	2934	4276	4276					0.03253169926188093
AVEDAFVPV	9	Unmodified	_AVEDAFVPV_					0	0	0		nc|ENSG00000115421|Q9BWT3-2|PAPOLG;ENSG00000115421|ENST00000238714|PAPOLG	nc|ENSG00000115421|Q9BWT3-2|PAPOLG	nc|ENSG00000115421|Q9BWT3-2|PAPOLG	MSMS	A375_MHC_IP_R2	2	473.6792297363281	2	473.74765	945.480748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.557	1	71.291	70.791	71.791	0.73421								0	0	0	0.1521	1	26746	26746		18.135	0	1				4367	3307	2891	2935	4277	4277					0.0058267628628527746
AVEDEGLRVF	10	Unmodified	_AVEDEGLRVF_					0	0	0		ENSG00000185989|ENST00000334062|RASA3	ENSG00000185989|ENST00000334062|RASA3	ENSG00000185989|ENST00000334062|RASA3	MULTI-SECPEP	A375_MHC_IP_R1	1	567.7122192382812	2	567.793121	1133.57169	-0.3424	-0.00019442	0.12384	7.0314E-05	-0.21857	-0.0001241	568.2944773714959	91.804	0.45345	91.804	91.554	92.007	0					11	8	2	0	0	0	0.89761	1	33782	33782		8.1555	0	1	969630			4368	8714	2892	2936	4278	4278					0.010245202637634065
AVEEAMGMY	9	Unmodified	_AVEEAMGMY_					0	0	0		ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172;ENST00000507184.5_1_2:27680991-27709067:-|nuORF	ENSG00000138002|ENST00000260570|IFT172	ENSG00000138002|ENST00000260570|IFT172	MSMS	A375_MHC_IP_R1	1	500.62109375	2	500.709353	999.404154	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.532	1	51.532	51.032	52.032	0								0	0	0	0.14905	1	18294	18294		23.148	3.7094	1				4369	4942	2893	2937	4279	4279					-0.09557206596855394
AVEFGNQLEA	10	Unmodified	_AVEFGNQLEA_					0	0	0		ENST00000378052.5_1_7:148984726-148987127:+|nuORF;ENST00000476295.5_1_7:148984726-148990880:+|nuORF	ENST00000378052.5_1_7:148984726-148987127:+|nuORF	ENST00000378052.5_1_7:148984726-148987127:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	539.1976318359375	2	539.264196	1076.51384	-0.56794	-0.00030627	-0.00423	-2.2811E-06	-0.57217	-0.00030855	539.2640514972569	23.049	0.30234	23.049	22.873	23.176	0					11	5	3	0	0	0	0.69833	1	6205	6205		13.042	13.042	1	8450700			4370	11305	2894	2938	4280	4280					-0.021357416616638147
AVEFGNQLEA	10	Unmodified	_AVEFGNQLEA_					0	0	0		ENST00000378052.5_1_7:148984726-148987127:+|nuORF;ENST00000476295.5_1_7:148984726-148990880:+|nuORF	ENST00000378052.5_1_7:148984726-148987127:+|nuORF	ENST00000378052.5_1_7:148984726-148987127:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	539.264196	1076.51384	-0.56794	-0.00030627	-0.00423	-2.2811E-06	-0.57217	-0.00030855	539.2640514972569	23.049	0.30234	23.049	22.873	23.176	0	0	0	NaN	13.042	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8450700			4371	11305	2894	2938							-0.021357416616638147
AVEHLGAVVHP	11	Unmodified	_AVEHLGAVVHP_					0	0	0			REV__nc|ENSG00000075826|Q9NQW1-5|SEC31B	REV__nc|ENSG00000075826|Q9NQW1-5|SEC31B	MULTI-SECPEP	A375_MHC_IP_R1	1	377.6138916015625	3	376.876857	1127.60874	0.43464	0.0001638	-0.023485	-8.8508E-06	0.41115	0.00015495	376.87680429624436	51.177	0.71038	51.177	50.966	51.676	0					15	13	2	0	0	0	0.94285	1	18311	18311		10.899	3.8619	1	1545000	+		4372	16663	2895	2939	4281	4281					0.050042366001889604
AVEHLGAVVHP	11	Unmodified	_AVEHLGAVVHP_					0	0	0			REV__nc|ENSG00000075826|Q9NQW1-5|SEC31B	REV__nc|ENSG00000075826|Q9NQW1-5|SEC31B	MULTI-MATCH	A375_MHC_IP_R2	2		3	376.876857	1127.60874	0.029684	1.1187E-05	0.18012	6.7883E-05	0.20981	7.9071E-05	376.87688055336	50.339	0.355	51.093	50.804	51.159	0.75406	-0.04184	9.8694E-05	NaN	10.899	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1429100	+		4373	16663	2895	2939							0.050042366001889604
AVEMCCAL	8	Unmodified	_AVEMCCAL_					0	0	0			REV__ENST00000578759.1_1_17:60214444-60217453:-|nuORF	REV__ENST00000578759.1_1_17:60214444-60217453:-|nuORF	MSMS	A375_MHC_IP_R1	1	420.1790771484375	2	420.176635	838.338717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.787	1	70.787	70.287	71.287	0								0	0	0	0.16876	1	25706	25706		6.3541	1.1234	1		+		4374	17025	2896	2940	4282	4282					-0.08691899323559937
AVEMCCAL	8	Unmodified	_AVEMCCAL_					0	0	0			REV__ENST00000578759.1_1_17:60214444-60217453:-|nuORF	REV__ENST00000578759.1_1_17:60214444-60217453:-|nuORF	MSMS	A375_MHC_IP_R2	2	420.178955078125	2	420.176635	838.338717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.715	1	70.449	69.949	70.949	0.73421								0	0	0	0.16876	1	26421	26421		6.3541	1.1234	1		+		4375	17025	2896	2940	4283	4283					-0.08691899323559937
AVENEYKLR	9	Unmodified	_AVENEYKLR_					0	0	0			REV__ENSG00000186395|ENST00000269576|KRT10	REV__ENSG00000186395|ENST00000269576|KRT10	MULTI-SECPEP	A375_MHC_IP_R2	2	375.2645263671875	3	374.536501	1120.58767	0.024522	9.1844E-06	-1.2782	-0.00047874	-1.2537	-0.00046955	374.53590032539125	23.296	0.30227	23.926	23.777	24.079	0.63014					7	5	2	0	0	0	0.75519	1	7540	7540		14.405	6.1189	1	745730	+	+	4376	15858	2897	2941	4284	4284					0.03220226500661738
AVEPFQRGL	9	Unmodified	_AVEPFQRGL_					0	0	0		ENSG00000186184|ENST00000302979|POLR1D	ENSG00000186184|ENST00000302979|POLR1D	ENSG00000186184|ENST00000302979|POLR1D	MSMS	A375_MHC_IP_R1	1	508.68939208984375	2	508.779816	1015.54508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.87	1	104.87	104.37	105.37	0								0	0	0	0.14677	1	38505	38505		26.884	1.4843	1				4377	8725	2898	2942	4285	4285					0.03792876163083747
AVEPTDVFL	9	Unmodified	_AVEPTDVFL_					0	0	0		ENST00000556704.1_1_15:91486092-91490047:+|nuORF	ENST00000556704.1_1_15:91486092-91490047:+|nuORF	ENST00000556704.1_1_15:91486092-91490047:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	990.91455078125	1	990.514239	989.506963	0.058878	5.832E-05	2.9628	0.0029347	3.0217	0.002993	990.5177274088164	108.9	0.56229	109.65	109.27	109.83	0.74684					14	10	2	0	0	0	0.11296	1	41072	41072		48.346	8.3885	1	3891300			4378	13444	2899	2943	4286	4286					0.011789454577638026
AVERREPRASH	11	Unmodified	_AVERREPRASH_					0	0	0			REV__KIAA1755|p.G1072E|1|0.58|ENSG00000149633|chr20:38213430-38213430|C/T|missense_variant	REV__KIAA1755|p.G1072E|1|0.58|ENSG00000149633|chr20:38213430-38213430|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	436.6361389160156	3	436.569086	1306.68543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.954	1	19.557	19.057	20.057	0.60308								0	0	0	0.16275	1	5706	5706		4.4062	0.52982	1		+		4379	26845	2900	2944	4287	4287					0.04435428149372456
AVFDKTLAEL	10	Unmodified	_AVFDKTLAEL_					0	0	0		nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000539659.5_1_12:14576849-14613468:+|nuORF;ENST00000541654.1_1_12:14538317-14613468:+|nuORF;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	nc|ENSG00000171681|Q6VMQ6-5|ATF7IP	nc|ENSG00000171681|Q6VMQ6-5|ATF7IP	MULTI-SECPEP	A375_MHC_IP_R1	1	554.208251953125	2	553.808239	1105.60193	-0.56138	-0.0003109	-1.407	-0.00077922	-1.9684	-0.0010901	553.8082519138229	89.546	0.55824	89.546	89.272	89.83	0					21	10	3	0	0	0	0.13157	1	32910	32910		80.676	24.499	1	3326900			4380	7628	2901	2945	4288	4288					0.05334878928965736
AVFEDKVFW	9	Unmodified	_AVFEDKVFW_					0	0	0		nc|ENSG00000130164|P01130-2|LDLR;nc|ENSG00000130164|P01130-3|LDLR;nc|ENSG00000130164|P01130-6|LDLR;nc|ENSG00000130164|P01130-4|LDLR;nc|ENSG00000130164|P01130-5|LDLR;ENSG00000130164|ENST00000558518|LDLR;ENST00000460214.5_1_1:53723708-53728160:-|nuORF	nc|ENSG00000130164|P01130-2|LDLR	nc|ENSG00000130164|P01130-2|LDLR	MULTI-MSMS	A375_MHC_IP_R1	1	571.1895751953125	2	570.78985	1139.56515	-0.23086	-0.00013178	-0.50745	-0.00028964	-0.73831	-0.00042142	570.7897371296336	102.12	0.60701	102.12	101.75	102.35	0					22	11	3	0	0	0	0.17338	2	37519	37504;37519		39.95	14.55	1	1867900			4381	4225	2902	2946	4289;4290	4290					0.0009462710304433131
AVFEETLEKT	10	Unmodified	_AVFEETLEKT_					0	0	0		nc|ENSG00000171204|Q8IUX1-2|TMEM126B;ENSG00000171204|ENST00000358867|TMEM126B;nc|ENSG00000171204|Q8IUX1-5|TMEM126B	nc|ENSG00000171204|Q8IUX1-2|TMEM126B	nc|ENSG00000171204|Q8IUX1-2|TMEM126B	MULTI-SECPEP	A375_MHC_IP_R2	2	388.9488830566406	3	389.536166	1165.58667	-0.46901	-0.0001827	3.0327	0.0011813	2.5637	0.00099864	389.5364008697455	34.259	0.25618	35.011	34.904	35.16	0.75225					7	4	2	0	0	0	0.92514	1	12392	12392		4.7159	0	1	1562500			4382	7580	2903	2947	4291	4291					0.010499673411004551
AVFKQQTSL	9	Unmodified	_AVFKQQTSL_					0	0	0			REV__ENST00000513061.1_1_4:172734932-172737255:+|nuORF	REV__ENST00000513061.1_1_4:172734932-172737255:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	511.6875305175781	2	511.287474	1020.5604	-0.60469	-0.00030917	0.29433	0.00015049	-0.31036	-0.00015868	511.2874202646477	85.201	0.66409	85.937	85.626	86.29	0.73602					23	12	3	0	0	0	0.69504	1	32410	32410		7.9102	0	1	3394700	+		4383	25634	2904	2948	4292	4292					0.050937429602981865
AVFPHLTVV	9	Unmodified	_AVFPHLTVV_					0	0	0		ENSG00000134825|ENST00000537328|TMEM258	ENSG00000134825|ENST00000537328|TMEM258	ENSG00000134825|ENST00000537328|TMEM258	MULTI-MSMS	A375_MHC_IP_R1	1	492.18951416015625	2	491.789653	981.564752	-0.28478	-0.00014005	-1.6102	-0.00079186	-1.895	-0.00093192	491.7897893569461	91.786	1.114	91.786	91.503	92.617	0					54	21	4	0	0	0	0.0098247	1	33710	33710		114.94	58.403	1	8631800			4384	4614	2905	2949	4293	4293					0.07323252173853234
AVFPHLTVV	9	Unmodified	_AVFPHLTVV_					0	0	0		ENSG00000134825|ENST00000537328|TMEM258	ENSG00000134825|ENST00000537328|TMEM258	ENSG00000134825|ENST00000537328|TMEM258	MULTI-SECPEP	A375_MHC_IP_R2	2	492.1895751953125	2	491.789653	981.564752	-0.42206	-0.00020757	-3.2573	-0.0016019	-3.6793	-0.0018095	491.7893923433103	90.961	1.3185	91.696	91.16	92.478	0.7345					51	25	3	0	0	0	0.011416	1	34536	34536		114.94	58.403	1	5537200			4385	4614	2905	2949	4294	4294					0.07323252173853234
AVFPSIVGR	9	Unmodified	_AVFPSIVGR_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000482085.1_1_10:90708534-90712518:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196834|ENST00000451531|POTEI;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	A375_MHC_IP_R1	1	473.67919921875	2	473.279452	944.544351	-0.29144	-0.00013793	-0.23965	-0.00011342	-0.53108	-0.00025135	473.2792652186341	71.373	0.50755	71.373	71.108	71.615	0					16	9	2	0	0	0	0.070818	2	25920	25920;26001		56.177	14.082	1	3368500			4386	1615;5418;9064	2906	2950	4295;4296	4295					0.06986081514048692
AVFPSIVGR	9	Unmodified	_AVFPSIVGR_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000482085.1_1_10:90708534-90712518:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196834|ENST00000451531|POTEI;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	A375_MHC_IP_R2	2	473.6590270996094	2	473.279452	944.544351	-0.54425	-0.00025758	0.037572	1.7782E-05	-0.50668	-0.0002398	473.27936607109194	70.552	0.55705	71.286	70.946	71.503	0.7342					19	10	3	0	0	0	0.41409	1	26683	26683		24.021	4.7636	1	3834500			4387	1615;5418;9064	2906	2950	4297	4297					0.06986081514048692
AVFRGVGP	8	Unmodified	_AVFRGVGP_					0	0	0			REV__ENSG00000167972|ENST00000301732|ABCA3	REV__ENSG00000167972|ENST00000301732|ABCA3	MULTI-SECPEP	A375_MHC_IP_R1	1	401.14501953125	2	401.732138	801.449723	-0.4234	-0.00017009	0.82609	0.00033187	0.40269	0.00016177	401.7324185498984	40.086	0.45934	40.086	39.845	40.304	0					13	8	2	0	0	0	0.94479	1	13816	13816		13.508	8.7519	1	2201400	+		4388	20808	2907	2951	4298	4298					0.04105567762712781
AVFSNVDLNN	10	Unmodified	_AVFSNVDLNN_					0	0	0		nc|ENSG00000124787|O75818-2|RPP40;ENSG00000124787|ENST00000380051|RPP40	nc|ENSG00000124787|O75818-2|RPP40	nc|ENSG00000124787|O75818-2|RPP40	MULTI-MSMS	A375_MHC_IP_R1	1	546.7261352539062	2	546.769645	1091.52474	-0.53153	-0.00029062	-0.17816	-9.7412E-05	-0.70969	-0.00038803	546.7700095506303	40.195	0.96526	40.195	39.948	40.913	0					27	18	2	0	0	0	0.63639	1	13906	13906		18.146	6.5061	1	3220400			4389	3931	2908	2952	4299	4299					-0.017363392873676275
AVGAKFGQVGL	11	Unmodified	_AVGAKFGQVGL_					0	0	0		ENSG00000092470|ENST00000263795|WDR76	ENSG00000092470|ENST00000263795|WDR76	ENSG00000092470|ENST00000263795|WDR76	MULTI-MSMS	A375_MHC_IP_R1	1	524.375	2	523.803291	1045.59203	-0.47437	-0.00024848	0.15319	8.0241E-05	-0.32118	-0.00016824	523.8034528897721	77.562	1.1184	77.562	76.93	78.048	0					41	20	3	0	0	0	0.5062	1	28356	28356		30.637	3.7529	1	27864000			4390	2007	2909	2953	4300	4300					0.0710573571425357
AVGDGPPRV	9	Unmodified	_AVGDGPPRV_					0	0	0		nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	MULTI-SECPEP	A375_MHC_IP_R1	1	434.63775634765625	2	434.237784	866.461016	-0.10584	-4.5959E-05	-0.08516	-3.698E-05	-0.191	-8.2939E-05	434.2377254994358	28.511	0.50668	28.511	28.238	28.745	0					22	9	3	0	0	0	0.23894	1	8795	8795		55.503	19.376	1	8049500			4391	9460	2910	2954	4301	4301					0.022443450661853603
AVGDGPPRV	9	Unmodified	_AVGDGPPRV_					0	0	0		nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	MULTI-SECPEP	A375_MHC_IP_R2	2	434.637939453125	2	434.237784	866.461016	-0.29977	-0.00013017	-0.0942	-4.0905E-05	-0.39397	-0.00017108	434.2376791678377	27.849	0.50707	28.528	28.351	28.858	0.67857					20	9	3	0	0	0	0.056023	1	9561	9561		85.642	39.621	1	9250800			4392	9460	2910	2954	4302	4302					0.022443450661853603
AVGDIPGVR	9	Unmodified	_AVGDIPGVR_					0	0	0		ENST00000429775.2_1_X:70182861-70183140:+|nuORF;ENSG00000186468|ENST00000296674|RPS23	ENST00000429775.2_1_X:70182861-70183140:+|nuORF	ENST00000429775.2_1_X:70182861-70183140:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	442.6536560058594	2	442.253434	882.492316	-0.059884	-2.6484E-05	0.1934	8.5533E-05	0.13352	5.9048E-05	442.2534851937938	59.844	0.35511	59.844	59.651	60.006	0					12	6	3	0	0	0	0.13797	1	21547	21547		43.858	11.553	1	1136300			4393	8747	2911	2955	4303	4303					0.04636918100288767
AVGDIPGVR	9	Unmodified	_AVGDIPGVR_					0	0	0		ENST00000429775.2_1_X:70182861-70183140:+|nuORF;ENSG00000186468|ENST00000296674|RPS23	ENST00000429775.2_1_X:70182861-70183140:+|nuORF	ENST00000429775.2_1_X:70182861-70183140:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	442.6532287597656	2	442.253434	882.492316	-0.73857	-0.00032664	0.20988	9.2821E-05	-0.52869	-0.00023381	442.25353077099044	59.072	0.50732	59.819	59.54	60.047	0.74714					12	9	2	0	0	0	0.41409	1	22387	22387		24.021	8.1734	1	1413900			4394	8747	2911	2955	4304	4304					0.04636918100288767
AVGDPHRDFLF	11	Unmodified	_AVGDPHRDFLF_					0	0	0			REV__HTATSF1|p.L305F|1|0.5|ENSG00000102241|chrX:136509169-136509169|C/T|missense_variant	REV__HTATSF1|p.L305F|1|0.5|ENSG00000102241|chrX:136509169-136509169|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	636.7459716796875	2	637.319837	1272.62512	-0.5197	-0.00033121	-1.3942	-0.00088855	-1.9139	-0.0012198	637.3185257426674	82.426	0.35696	82.426	82.214	82.571	0					11	6	2	0	0	0	0.90584	1	30079	30079		12.241	4.0851	1	1414600	+		4395	26764	2912	2956	4305	4305					-0.0002868223373297951
AVGEMGPWVT	10	Unmodified	_AVGEMGPWVT_					0	0	0		ENST00000316084.9_1_X:71492477-71493137:-|nuORF	ENST00000316084.9_1_X:71492477-71493137:-|nuORF	ENST00000316084.9_1_X:71492477-71493137:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	523.5650634765625	2	523.75241	1045.49027	-0.23312	-0.0001221	-0.58024	-0.0003039	-0.81336	-0.000426	523.7522445968987	92.665	0.60942	92.665	92.261	92.871	0					14	11	2	0	0	0	0.91556	1	34129	34129		6.2058	0	1	919980			4396	10660	2913	2957	4306	4306					-0.03065878699840141
AVGERSPAT	9	Unmodified	_AVGERSPAT_					0	0	0			REV__nc|ENSG00000292343|Q02040-3|AKAP17A	REV__nc|ENSG00000292343|Q02040-3|AKAP17A	MULTI-SECPEP	A375_MHC_IP_R2	2	886.7670288085938	1	887.458121	886.450845	-0.49977	-0.00044352	-1.0575	-0.00093849	-1.5573	-0.001382	887.4533417290056	130.48	0.25313	130.7	130.5	130.75	0.2142					5	4	2	0	0	0	0.74412	1	51271	51271		14.838	1.3304	1	4373400	+		4397	27564	2914	2958	4307	4307					0.003077373409610118
AVGGDLSSASL	11	Unmodified	_AVGGDLSSASL_					0	0	0			REV__ENST00000527249.5_1_11:65767937-65769464:-|nuORF	REV__ENST00000527249.5_1_11:65767937-65769464:-|nuORF	MSMS	A375_MHC_IP_R1	1	488.6710510253906	2	488.750921	975.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.311	1	63.311	62.811	63.811	0								0	0	0	0.14647	1	22881	22881		22.736	1.8651	1		+		4398	23514	2915	2959	4308	4308					-0.0014343055299832486
AVGQEVFGLV	10	Unmodified	_AVGQEVFGLV_					0	0	0		ENST00000490885.6_1_1:186645551-186649536:-|nuORF;ENSG00000073756|ENST00000367468|PTGS2	ENST00000490885.6_1_1:186645551-186649536:-|nuORF	ENST00000490885.6_1_1:186645551-186649536:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	510.1817321777344	2	509.782025	1017.5495	-0.40499	-0.00020646	-0.14273	-7.2759E-05	-0.54772	-0.00027922	509.7819792314898	103.9	0.55912	103.9	103.63	104.18	0					17	10	2	0	0	0	0.48072	1	38178	38178		18.146	0	1	2246200			4399	1570	2916	2960	4309	4309					0.04142340585997317
AVGSDPDVGSL	11	Unmodified	_AVGSDPDVGSL_					0	0	0		ENST00000493544.1_1_2:242054361-242072488:-|nuORF;nc|ENSG00000115687|Q96RG2-4|PASK;ENSG00000115687|ENST00000234040|PASK;nc|ENSG00000115687|Q96RG2-2|PASK	ENST00000493544.1_1_2:242054361-242072488:-|nuORF	ENST00000493544.1_1_2:242054361-242072488:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	507.98004150390625	2	508.748379	1015.4822	-0.69848	-0.00035535	-0.40466	-0.00020587	-1.1031	-0.00056122	508.7482587889302	67.72	0.66245	68.457	68.155	68.817	0.73631					19	12	2	0	0	0	0.98416	1	25671	25671		6.2058	6.2058	1	1347500			4400	3331	2917	2961	4310	4310					-0.024917344156051513
AVGSNDST	8	Unmodified	_AVGSNDST_					0	0	0			REV__ENSG00000169933|ENST00000675598|FRMPD4	REV__ENSG00000169933|ENST00000675598|FRMPD4	MULTI-SECPEP	A375_MHC_IP_R2	2	750.6767578125	1	750.326438	749.319162	-0.83421	-0.00062593	0.66366	0.00049796	-0.17055	-0.00012797	750.3280653149241	125.3	0.20054	125.6	125.52	125.72	0.2951					5	3	2	0	0	0	0.972	1	48814	48814		4.756	0	1	28600000	+		4401	20954	2918	2962	4311	4311					-0.06552492746789085
AVGTILGV	8	Unmodified	_AVGTILGV_					0	0	0		tr|U7T3E2|U7T3E2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00397PE=4SV=1;HECW2|p.V344A|1|0.47|ENSG00000138411|chr2:196319859-196319859|A/G|missense_variant;ENSG00000138411|ENST00000644978|HECW2	tr|U7T3E2|U7T3E2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00397PE=4SV=1;ENSG00000138411|ENST00000644978|HECW2	tr|U7T3E2|U7T3E2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00397PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	729.85009765625	1	729.450517	728.44324	-0.55561	-0.00040529	0.07052	5.1441E-05	-0.48509	-0.00035385	729.4503089764814	87.786	0.5095	87.786	87.542	88.052	0					13	9	2	0	0	0	0.78043	1	32273	32273		18.135	0	1	1741900			4402	29969;4991	2919	2963	4312	4312					0.06815629811330837
AVHDSFVAV	9	Unmodified	_AVHDSFVAV_					0	0	0		ENSG00000080345|ENST00000444746|RIF1;nc|ENSG00000080345|Q5UIP0-2|RIF1	ENSG00000080345|ENST00000444746|RIF1	ENSG00000080345|ENST00000444746|RIF1	MULTI-SECPEP	A375_MHC_IP_R1	1	473.1454162597656	2	472.745442	943.476331	-0.32609	-0.00015416	0.094059	4.4466E-05	-0.23203	-0.00010969	472.74548475149965	51.296	0.65925	51.296	50.966	51.625	0					20	12	2	0	0	0	0.054184	1	18209	18209		70.716	23.795	1	8016900			4403	1712	2920	2964	4313	4313					0.00233211863383076
AVHDSFVAV	9	Unmodified	_AVHDSFVAV_					0	0	0		ENSG00000080345|ENST00000444746|RIF1;nc|ENSG00000080345|Q5UIP0-2|RIF1	ENSG00000080345|ENST00000444746|RIF1	ENSG00000080345|ENST00000444746|RIF1	MULTI-MSMS	A375_MHC_IP_R2	2	473.14544677734375	2	472.745442	943.476331	-0.72443	-0.00034247	0.30657	0.00014493	-0.41787	-0.00019754	472.74558336688784	50.465	0.60916	51.219	50.955	51.564	0.75406					19	11	2	0	0	0	0.03497	1	18956	18956		70.716	30.267	1	7385800			4404	1712	2920	2964	4314	4314					0.00233211863383076
AVHEDIVAV	9	Unmodified	_AVHEDIVAV_					0	0	0		nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3;DIS3|p.L296P|1|0.24|ENSG00000083520|chr13:72775311-72775311|A/G|missense_variant	nc|ENSG00000083520|Q9Y2L1-2|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	MULTI-SECPEP	A375_MHC_IP_R1	1	477.15838623046875	2	476.758549	951.502546	-0.2547	-0.00012143	0.08089	3.8565E-05	-0.17381	-8.2865E-05	476.75843237891576	48.082	0.80811	48.082	47.618	48.426	0					44	15	5	0	0	0	0.035471	1	16888	16888		81.864	39.769	1	25800000			4405	1779	2921	2965	4315	4315					0.0248548103485291
AVHEDIVAV	9	Unmodified	_AVHEDIVAV_					0	0	0		nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3;DIS3|p.L296P|1|0.24|ENSG00000083520|chr13:72775311-72775311|A/G|missense_variant	nc|ENSG00000083520|Q9Y2L1-2|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	MULTI-SECPEP	A375_MHC_IP_R2	2	477.1241760253906	2	476.758549	951.502546	-0.34633	-0.00016512	0.29943	0.00014276	-0.046898	-2.2359E-05	476.75856017963326	47.235	0.86376	47.996	47.412	48.275	0.76128					38	16	4	0	0	0	0.035471	1	17672	17672		93.883	45.538	1	25840000			4406	1779	2921	2965	4316	4316					0.0248548103485291
AVHETLVAV	9	Unmodified	_AVHETLVAV_					0	0	0		ENSG00000141873|ENST00000269740|SLC39A3	ENSG00000141873|ENST00000269740|SLC39A3	ENSG00000141873|ENST00000269740|SLC39A3	MULTI-MSMS	A375_MHC_IP_R1	1	470.1687927246094	2	469.768917	937.523281	-0.091423	-4.2948E-05	1.5868	0.00074542	1.4954	0.00070247	469.7687568560605	49.736	0.45773	49.736	49.49	49.947	0					18	8	3	0	0	0	0.015336	1	17602	17602		89.427	35.851	1	2256800			4407	5276	2922	2966	4317	4317					0.0520207141452147
AVHETLVAV	9	Unmodified	_AVHETLVAV_					0	0	0		ENSG00000141873|ENST00000269740|SLC39A3	ENSG00000141873|ENST00000269740|SLC39A3	ENSG00000141873|ENST00000269740|SLC39A3	MULTI-MSMS	A375_MHC_IP_R2	2	470.16839599609375	2	469.768917	937.523281	-0.69775	-0.00032778	0.24787	0.00011644	-0.44988	-0.00021134	469.7689579906898	48.792	0.35784	49.549	49.332	49.69	0.75737					10	6	2	0	0	0	0.03497	1	18339	18339		70.716	19.86	1	2267700			4408	5276	2922	2966	4318	4318					0.0520207141452147
AVHNFMCY	8	Unmodified	_AVHNFMCY_					0	0	0			REV__ENSG00000094631|ENST00000334136|HDAC6	REV__ENSG00000094631|ENST00000334136|HDAC6	MSMS	A375_MHC_IP_R1	1	492.7164611816406	2	492.706948	983.399343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.371	1	89.371	88.871	89.871	0								0	0	0	0.16876	1	32829	32829		14.582	4.3983	1		+		4409	16984	2923	2967	4319	4319					-0.09302045948970772
AVHTRNRSLLE	11	Unmodified	_AVHTRNRSLLE_					0	0	0			REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	MSMS	A375_MHC_IP_R1	1	648.4321899414062	2	648.362567	1294.71058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.41	1	124.41	123.91	124.91	0								0	0	0	0.16176	1	46830	46830		9.544	0.16085	1		+		4410	16654	2924	2968	4320	4320					0.07501482951965954
AVIDVGINRV	10	Unmodified	_AVIDVGINRV_					0	0	0		nc|ENSG00000065911|P13995-2|MTHFD2;ENSG00000065911|ENST00000394053|MTHFD2	nc|ENSG00000065911|P13995-2|MTHFD2	nc|ENSG00000065911|P13995-2|MTHFD2	MULTI-SECPEP	A375_MHC_IP_R2	2	528.7135620117188	2	528.314023	1054.61349	-0.50009	-0.0002642	-0.18481	-9.7636E-05	-0.68489	-0.00036184	528.3139105330408	67.546	0.61092	68.282	67.9	68.511	0.73631					20	11	2	0	0	0	0.42334	1	25580	25580		51.63	26.23	1	3616400			4411	1395	2925	2969	4321	4321					0.08837120742941806
AVIDVGINRV	10	Unmodified	_AVIDVGINRV_					0	0	0		nc|ENSG00000065911|P13995-2|MTHFD2;ENSG00000065911|ENST00000394053|MTHFD2	nc|ENSG00000065911|P13995-2|MTHFD2	nc|ENSG00000065911|P13995-2|MTHFD2	MULTI-MATCH	A375_MHC_IP_R1	1		2	528.314023	1054.61349	-0.83976	-0.00044366	0.51891	0.00027415	-0.32085	-0.00016951	528.3143249547726	68.318	0.50744	68.318	68.057	68.565	0	0.017962	0.00021423	NaN	51.63	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2720600			4412	1395	2925	2969							0.08837120742941806
AVIEAEHTL	9	Unmodified	_AVIEAEHTL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;ENST00000436565.2_1_13:77561342-77561690:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	A375_MHC_IP_R1	1	492.1634826660156	2	491.763832	981.513111	-0.37723	-0.00018551	-0.078325	-3.8517E-05	-0.45556	-0.00022403	491.7638470772668	42.043	0.45753	42.043	41.725	42.183	0					13	8	2	0	0	0	0.24479	1	14586	14586		42.095	42.095	1	2889500			4413	4716	2926	2970	4322	4322					0.02161463689287757
AVIEAEHTL	9	Unmodified	_AVIEAEHTL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;ENST00000436565.2_1_13:77561342-77561690:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	A375_MHC_IP_R2	2	492.1632995605469	2	491.763832	981.513111	-0.77043	-0.00037887	0.13398	6.5888E-05	-0.63644	-0.00031298	491.76383066594036	41.211	0.30467	41.986	41.794	42.098	0.77451					9	5	2	0	0	0	0.14105	1	15316	15316		60.39	22.238	1	2096100			4414	4716	2926	2970	4323	4323					0.02161463689287757
AVIEDTWHY	9	Unmodified	_AVIEDTWHY_					0	0	0		ENSG00000052802|ENST00000261507|MSMO1;nc|ENSG00000052802|Q15800-2|MSMO1	ENSG00000052802|ENST00000261507|MSMO1	ENSG00000052802|ENST00000261507|MSMO1	MSMS	A375_MHC_IP_R1	1	567.0638427734375	2	567.266739	1132.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.651	1	69.651	69.151	70.151	0								0	0	0	0.14905	1	25279	25279		23.148	5.0134	1				4415	1241	2927	2971	4324	4324					-0.042034377990376015
AVIEHLERL	9	Unmodified	_AVIEHLERL_					0	0	0		ENSG00000257218|ENST00000551765|GATC	ENSG00000257218|ENST00000551765|GATC	ENSG00000257218|ENST00000551765|GATC	MULTI-MSMS	A375_MHC_IP_R1	1	360.94512939453125	3	360.545108	1078.61349	0.34271	0.00012356	-0.72431	-0.00026115	-0.38159	-0.00013758	360.5447794910123	49.86	0.56156	49.86	49.591	50.153	0					21	10	3	0	0	0	0.29123	1	17618	17618		29.437	15.822	1	3558400			4416	9906	2928	2972	4325	4325					0.0773312074295518
AVIEHLERL	9	Unmodified	_AVIEHLERL_					0	0	0		ENSG00000257218|ENST00000551765|GATC	ENSG00000257218|ENST00000551765|GATC	ENSG00000257218|ENST00000551765|GATC	MULTI-MSMS	A375_MHC_IP_R2	2	360.9447937011719	3	360.545108	1078.61349	-0.32789	-0.00011822	-0.063502	-2.2895E-05	-0.39139	-0.00014111	360.5450212577799	48.883	0.51034	49.64	49.434	49.944	0.75737					20	9	3	0	0	0	0.2415	1	18373	18373		27.088	12.87	1	3331100			4417	9906	2928	2972	4326	4326					0.0773312074295518
AVIGDVIRV	9	Unmodified	_AVIGDVIRV_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	A375_MHC_IP_R1	1	471.6925354003906	2	471.292559	940.570566	-0.54396	-0.00025636	-0.38302	-0.00018052	-0.92698	-0.00043688	471.2925128361717	80.488	0.86214	80.488	80.086	80.948	0					54	16	5	0	0	0	0.0097266	1	29312	29312		111.29	40.153	1	30610000			4418	6987	2929	2973	4327	4327					0.09790350685523208
AVIGDVIRV	9	Unmodified	_AVIGDVIRV_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MATCH	A375_MHC_IP_R2	2		2	471.292559	940.570566	-0.48721	-0.00022962	-0.6736	-0.00031746	-1.1608	-0.00054708	471.29248205470776	79.458	0.96426	80.203	79.896	80.86	0.74473	-0.14269	-0.00016509	NaN	111.29	57	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28202000			4419	6987	2929	2973							0.09790350685523208
AVIGDVIRVY	10	Unmodified	_AVIGDVIRVY_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1800537109375	2	552.824224	1103.63389	-0.68312	-0.00037764	0.010119	5.5938E-06	-0.673	-0.00037205	552.8242159685491	89.93	0.40834	90.661	90.493	90.902	0.7318					12	7	2	0	0	0	0.73104	1	34202	34202		31.268	24.545	1	1335600			4420	6987	2930	2974	4328	4328					0.08622291402775772
AVIGDVIRVY	10	Unmodified	_AVIGDVIRVY_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MATCH	A375_MHC_IP_R1	1		2	552.824224	1103.63389	-0.80005	-0.00044228	-1.2657	-0.00069972	-2.0658	-0.001142	552.8236051579809	90.667	0.40829	90.667	90.488	90.896	0	0.0026151	-0.0010619	NaN	24.991	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	616730			4421	6987	2930	2974							0.08622291402775772
AVIGGVIAV	9	Unmodified	_AVIGGVIAV_					0	0	0		ENSG00000154529|ENST00000377561|CNTNAP3B;ENST00000435173.1_9:65632066-65661969:+|nuORF;ENST00000333554.4_9:40307429-40337427:+|nuORF;ENSG00000106714|ENST00000297668|CNTNAP3;nc|ENSG00000155052|Q8WYK1|CNTNAP5;ENSG00000155052|ENST00000682447|CNTNAP5	ENSG00000154529|ENST00000377561|CNTNAP3B;nc|ENSG00000155052|Q8WYK1|CNTNAP5	ENSG00000154529|ENST00000377561|CNTNAP3B	MULTI-MSMS	A375_MHC_IP_R1	1	798.9083862304688	1	798.508366	797.501089	-0.38106	-0.00030428	0.47459	0.00037897	0.093532	7.4686E-05	798.5086883645187	102.95	0.71255	102.95	102.61	103.32	0					31	13	3	0	0	0	0.071148	1	37921	37921		56.048	2.4727	1	11877000			4422	6094;6121	2931	2975	4329	4329					0.09423891736753376
AVIGGVIAV	9	Unmodified	_AVIGGVIAV_					0	0	0		ENSG00000154529|ENST00000377561|CNTNAP3B;ENST00000435173.1_9:65632066-65661969:+|nuORF;ENST00000333554.4_9:40307429-40337427:+|nuORF;ENSG00000106714|ENST00000297668|CNTNAP3;nc|ENSG00000155052|Q8WYK1|CNTNAP5;ENSG00000155052|ENST00000682447|CNTNAP5	ENSG00000154529|ENST00000377561|CNTNAP3B;nc|ENSG00000155052|Q8WYK1|CNTNAP5	ENSG00000154529|ENST00000377561|CNTNAP3B	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	798.508366	797.501089	-0.89903	-0.00071788	0.36105	0.0002883	-0.53798	-0.00042958	798.5085433170686	102.03	0.81528	102.8	102.46	103.28	0.76428	-0.076304	-5.6304E-05	NaN	56.048	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11560000			4423	6094;6121	2931	2975							0.09423891736753376
AVIGGVLGV	9	Unmodified	_AVIGGVLGV_					0	0	0		ENSG00000158887|ENST00000533357|MPZ;nc|ENSG00000158887|P25189-2|MPZ	ENSG00000158887|ENST00000533357|MPZ	ENSG00000158887|ENST00000533357|MPZ	MULTI-SECPEP	A375_MHC_IP_R1	1	784.8928833007812	1	784.492716	783.485439	-0.37492	-0.00029412	0.2509	0.00019683	-0.12402	-9.7293E-05	784.4927183759876	105.04	0.4549	105.04	104.74	105.2	0					14	8	2	0	0	0	0.090069	1	38618	38618		56.048	10.298	1	1776500			4424	6339	2932	2976	4330	4330					0.08503605219709698
AVIGGVVAV	9	Unmodified	_AVIGGVVAV_					0	0	0		ENST00000537140.5_1_11:115040311-115375169:-|nuORF;nc|ENSG00000182985|Q9BY67-5|CADM1;nc|ENSG00000182985|Q9BY67|CADM1;nc|ENSG00000182985|Q9BY67-4|CADM1;ENSG00000182985|ENST00000331581|CADM1;ENST00000545960.5_1_11:115040311-115061650:-|nuORF;ENST00000546000.1_1_11:115047196-115049577:-|nuORF	ENST00000537140.5_1_11:115040311-115375169:-|nuORF	ENST00000537140.5_1_11:115040311-115375169:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	784.8925170898438	1	784.492716	783.485439	-0.32793	-0.00025726	0.127	9.9629E-05	-0.20093	-0.00015763	784.4927117951772	88.94	0.96469	88.94	88.561	89.526	0					44	18	4	0	0	0	0.14801	1	32809	32809		45.75	9.2838	1	28515000			4425	8453	2933	2977	4331	4331					0.08503605219709698
AVIGGVVAV	9	Unmodified	_AVIGGVVAV_					0	0	0		ENST00000537140.5_1_11:115040311-115375169:-|nuORF;nc|ENSG00000182985|Q9BY67-5|CADM1;nc|ENSG00000182985|Q9BY67|CADM1;nc|ENSG00000182985|Q9BY67-4|CADM1;ENSG00000182985|ENST00000331581|CADM1;ENST00000545960.5_1_11:115040311-115061650:-|nuORF;ENST00000546000.1_1_11:115047196-115049577:-|nuORF	ENST00000537140.5_1_11:115040311-115375169:-|nuORF	ENST00000537140.5_1_11:115040311-115375169:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	784.492716	783.485439	-0.91991	-0.00072167	0.47714	0.00037431	-0.44277	-0.00034735	784.4930530788163	88.016	0.86155	88.748	88.418	89.279	0.7318	-0.096179	0.00010251	NaN	45.75	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34879000			4426	8453	2933	2977							0.08503605219709698
AVIGHNEAFL	10	Unmodified	_AVIGHNEAFL_					0	0	0			REV__ENSG00000112796|ENST00000371383|ENPP5	REV__ENSG00000112796|ENST00000371383|ENPP5	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1849365234375	2	535.785099	1069.55564	-0.73954	-0.00039623	-0.35539	-0.00019041	-1.0949	-0.00058665	535.7848558172742	61.357	0.66339	61.357	60.973	61.636	0					20	12	2	0	0	0	0.83086	1	22151	22151		10.824	2.2306	1	2440100	+		4427	17756	2934	2978	4332	4332					0.023648588175319674
AVIGHNEAFL	10	Unmodified	_AVIGHNEAFL_					0	0	0			REV__ENSG00000112796|ENST00000371383|ENPP5	REV__ENSG00000112796|ENST00000371383|ENPP5	MULTI-MATCH	A375_MHC_IP_R2	2		2	535.785099	1069.55564	-1.1392	-0.00061035	-0.062327	-3.3394E-05	-1.2015	-0.00064375	535.7850472375926	60.605	0.61181	61.35	60.955	61.566	0.74504	-0.0030946	0.00016369	NaN	10.824	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2997000	+		4428	17756	2934	2978							0.023648588175319674
AVIGSVLTTI	10	Unmodified	_AVIGSVLTTI_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	A375_MHC_IP_R2	2	487.160888671875	2	487.30005	972.585547	-0.6743	-0.00032858	-1.0297	-0.0005018	-1.704	-0.00083038	487.29915020687014	70.916	0.25278	71.65	71.503	71.756	0.7342					5	4	2	0	0	0	0.52461	1	26900	26900		29.082	0	1	2053700			4429	9009	2935	2979	4333	4333					0.09815797762848888
AVIHEPKP	8	Unmodified	_AVIHEPKP_					0	0	0		ENSG00000170091|ENST00000303177|NSG2	ENSG00000170091|ENST00000303177|NSG2	ENSG00000170091|ENST00000303177|NSG2	MULTI-SECPEP	A375_MHC_IP_R1	1	446.1581726074219	2	445.758352	889.502152	0.093428	4.1646E-05	-0.34442	-0.00015353	-0.25099	-0.00011188	445.75816792324434	78.378	1.0627	78.378	78.048	79.111	0					30	20	2	0	0	0	0.69122	1	28576	28576		48.346	3.9388	1	3682500			4430	7471	2936	2980	4334	4334					0.05298106105658462
AVIHEPKP	8	Unmodified	_AVIHEPKP_					0	0	0		ENSG00000170091|ENST00000303177|NSG2	ENSG00000170091|ENST00000303177|NSG2	ENSG00000170091|ENST00000303177|NSG2	MULTI-SECPEP	A375_MHC_IP_R2	2	446.15802001953125	2	445.758352	889.502152	-0.38028	-0.00016951	-0.019391	-8.6437E-06	-0.39967	-0.00017816	445.7582555117213	77.44	1.1218	78.183	77.807	78.929	0.74293					38	21	3	0	0	0	0.69122	1	29381	29381		39.957	3.9131	1	3809900			4431	7471	2936	2980	4335	4335					0.05298106105658462
AVIVHHWDI	9	Unmodified	_AVIVHHWDI_					0	0	0		ENSG00000130383|ENST00000588525|FUT5	ENSG00000130383|ENST00000588525|FUT5	ENSG00000130383|ENST00000588525|FUT5	MULTI-SECPEP	A375_MHC_IP_R2	2	544.6876831054688	2	545.295633	1088.57671	-0.69116	-0.00037689	-2.8039	-0.0015289	-3.495	-0.0019058	545.2917441704387	68.511	0.35478	69.246	68.968	69.323	0.73512					11	6	2	0	0	0	0.73662	1	25898	25898		14.582	4.5078	1	956590			4432	4239	2937	2981	4336	4336					0.03596868917043139
AVKALNEM	8	Unmodified	_AVKALNEM_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A;nc|ENSG00000083642|Q9NTI5-2|PDS5B;ENSG00000083642|ENST00000315596|PDS5B	ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000083642|Q9NTI5-2|PDS5B	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	A375_MHC_IP_R1	1	438.6363830566406	2	438.236396	874.458238	-0.36311	-0.00015913	0.27374	0.00011996	-0.089368	-3.9164E-05	438.23641072547684	39.618	0.40381	39.618	39.441	39.845	0					13	7	2	0	0	0	0.77123	1	13592	13592		14.582	0	1	3232700			4433	3744;1783	2938	2982	4337	4337					0.015987536170200656
AVKARLRRPS	10	Unmodified	_AVKARLRRPS_					0	0	0			REV__ENST00000607710.1_1_8:123792649-123793066:-|nuORF	REV__ENST00000607710.1_1_8:123792649-123793066:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	577.7667236328125	2	577.367456	1152.72036	-0.44819	-0.00025877	-1.1516	-0.00066488	-1.5998	-0.00092365	577.3667727745983	134.3	0.40375	134.3	134.17	134.57	0					15	7	3	0	0	0	0.72422	1	51805	51805		2.9952	2.4705	1	5477100	+		4434	26551	2939	2983	4338	4338					0.1501071574798516
AVKARLRRPS	10	Unmodified	_AVKARLRRPS_					0	0	0			REV__ENST00000607710.1_1_8:123792649-123793066:-|nuORF	REV__ENST00000607710.1_1_8:123792649-123793066:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	577.367456	1152.72036	-0.44819	-0.00025877	-1.1516	-0.00066488	-1.5998	-0.00092365	577.3667727745983	134.3	0.40375	134.3	134.17	134.57	0	-0.0092463	4.4516E-05	NaN	2.9952	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5477100	+		4435	26551	2939	2983							0.1501071574798516
AVKARLRRPS	10	Unmodified	_AVKARLRRPS_					0	0	0			REV__ENST00000607710.1_1_8:123792649-123793066:-|nuORF	REV__ENST00000607710.1_1_8:123792649-123793066:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	577.367456	1152.72036	-0.072874	-4.2075E-05	-1.2222	-0.00070567	-1.2951	-0.00074774	577.3666163632435	134.18	0.41071	134.31	134.18	134.6	0.13901	0.0092463	-3.7053E-05	NaN	2.9952	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3651800	+		4436	26551	2939	2983							0.1501071574798516
AVKFLTPL	8	Unmodified	_AVKFLTPL_					0	0	0		ADCK2|p.P386L|1|0.63|ENSG00000133597|chr7:140679231-140679231|C/T|missense_variant	ADCK2|p.P386L|1|0.63|ENSG00000133597|chr7:140679231-140679231|C/T|missense_variant	ADCK2|p.P386L|1|0.63|ENSG00000133597|chr7:140679231-140679231|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	445.64239501953125	2	444.781296	887.54804	-0.0040665	-1.8087E-06	-0.59024	-0.00026253	-0.5943	-0.00026433	444.7809506788863	102.28	0.45498	102.28	101.95	102.4	0					11	8	2	0	0	0	0.7779	1	37559	37559		2.5775	0	1	750330			4437	57	2940	2984	4339	4339					0.09976751287888419
AVKFTQEEW	9	Unmodified	_AVKFTQEEW_					0	0	0		nc|ENSG00000269343|E7ETH6|ZNF587B;ENSG00000269343|ENST00000594901|ZNF587B;ENST00000597134.5_3_19:58350396-58367491:+|nuORF;ENST00000600397.1_1_19:58324632-58324782:-|nuORF;ENST00000596248.1_1_19:58319410-58325921:-|nuORF;ENSG00000178935|ENST00000391701|ZNF552	nc|ENSG00000269343|E7ETH6|ZNF587B	nc|ENSG00000269343|E7ETH6|ZNF587B	MULTI-SECPEP	A375_MHC_IP_R1	1	569.681884765625	2	569.282389	1136.55022	-0.38446	-0.00021887	-0.81009	-0.00046117	-1.1946	-0.00068004	569.2819148436448	58.861	0.45839	58.861	58.633	59.092	0					20	8	3	0	0	0	0.03109	1	21158	21158		103.35	67.226	1	3495500			4438	9980	2941	2985	4340	4340					-0.012588647649408813
AVKFTQEEW	9	Unmodified	_AVKFTQEEW_					0	0	0		nc|ENSG00000269343|E7ETH6|ZNF587B;ENSG00000269343|ENST00000594901|ZNF587B;ENST00000597134.5_3_19:58350396-58367491:+|nuORF;ENST00000600397.1_1_19:58324632-58324782:-|nuORF;ENST00000596248.1_1_19:58319410-58325921:-|nuORF;ENSG00000178935|ENST00000391701|ZNF552	nc|ENSG00000269343|E7ETH6|ZNF587B	nc|ENSG00000269343|E7ETH6|ZNF587B	MULTI-SECPEP	A375_MHC_IP_R2	2	569.6815795898438	2	569.282389	1136.55022	-0.6047	-0.00034424	-0.70865	-0.00040342	-1.3133	-0.00074766	569.2820687581021	58.034	0.55448	58.783	58.477	59.032	0.74894					17	10	2	0	0	0	0.011405	1	21965	21965		122.18	72.246	1	3041400			4439	9980	2941	2985	4341	4341					-0.012588647649408813
AVKKLRRWK	9	Unmodified	_AVKKLRRWK_					0	0	0		nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2	nc|ENSG00000119139|Q9UDY2-6|TJP2	nc|ENSG00000119139|Q9UDY2-6|TJP2	MULTI-SECPEP	A375_MHC_IP_R1	1	1184.6151123046875	1	1184.77386	1183.76658	0.23081	0.00027346	-0.23976	-0.00028407	-0.0089536	-1.0608E-05	1184.7715466375664	111.89	0.25546	111.89	111.77	112.03	0					6	4	2	0	0	0	0.80005	1	41023	41023		4.756	0.81161	1	1468700			4440	14565	2942	2986	4342	4342					0.18204780650057728
AVKSRIEL	8	Unmodified	_AVKSRIEL_					0	0	0		ENST00000368895.2_1_10:124641150-124648192:+|nuORF	ENST00000368895.2_1_10:124641150-124648192:+|nuORF	ENST00000368895.2_1_10:124641150-124648192:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	458.68463134765625	2	458.284734	914.554916	-0.31078	-0.00014243	0.16412	7.5212E-05	-0.14666	-6.7213E-05	458.284784162633	39.466	0.55631	39.466	39.238	39.794	0					24	10	3	0	0	0	0.66714	1	13478	13478		42.095	42.095	1	12611000			4441	11127	2943	2987	4343	4343					0.09422064168461475
AVKSVLLVV	9	Unmodified	_AVKSVLLVV_					0	0	0		ENST00000487787.5_1_1:202275897-202288332:+|nuORF;nc|ENSG00000133067|Q9HBX8-1|LGR6;nc|ENSG00000133067|Q9HBX8-2|LGR6;ENSG00000133067|ENST00000367278|LGR6	ENST00000487787.5_1_1:202275897-202288332:+|nuORF	ENST00000487787.5_1_1:202275897-202288332:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	464.13311767578125	2	464.315503	926.616454	-0.40955	-0.00019016	-0.08348	-3.8761E-05	-0.49303	-0.00022892	464.3154180435454	95.493	0.30649	96.243	95.99	96.296	0.75045					9	5	2	0	0	0	0.46045	1	36194	36194		12.241	2.1667	1	711890			4442	4482	2944	2988	4344	4344					0.15020995867757847
AVKTPEKLRS	10	Unmodified	_AVKTPEKLRS_					0	0	0			REV__nc|ENSG00000134369|Q8NEY1-5|NAV1	REV__nc|ENSG00000134369|Q8NEY1-5|NAV1	MULTI-MSMS	A375_MHC_IP_R1	1	377.63128662109375	3	376.896029	1127.66626	0.26477	9.979E-05	1.9351	0.00072934	2.1999	0.00082913	377.23145337694154	28.246	0.55388	28.246	27.937	28.491	0					20	10	3	0	0	0	0.67512	1	8731	8731		9.7643	2.2872	1	4293000	+		4443	18774	2945	2989	4345	4345					0.1075307880573746
AVKTPEKLRS	10	Unmodified	_AVKTPEKLRS_					0	0	0			REV__nc|ENSG00000134369|Q8NEY1-5|NAV1	REV__nc|ENSG00000134369|Q8NEY1-5|NAV1	MULTI-SECPEP	A375_MHC_IP_R1	1	377.54791259765625	3	376.896029	1127.66626	0.26477	9.979E-05	1.9351	0.00072934	2.1999	0.00082913	377.23145337694154	28.246	0.55388	28.246	27.937	28.491	0					20	10	3	0	0	0	0.93566	1	8794	8794		9.7643	6.921	1	4293000	+		4444	18774	2945	2989	4346	4346					0.1075307880573746
AVLAPLIALVY	11	Unmodified	_AVLAPLIALVY_					0	0	0		ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2	ENSG00000213593|ENST00000278422|TMX2	ENSG00000213593|ENST00000278422|TMX2	MULTI-SECPEP	A375_MHC_IP_R1	1	572.2622680664062	2	571.862818	1141.71108	-0.56643	-0.00032392	0.14098	8.0624E-05	-0.42544	-0.00024329	571.8627515058746	136.49	0.25703	136.49	136.36	136.61	0					7	4	2	0	0	0	0.99048	1	52596	52596		21.747	10.923	1	2586300			4445	9573	2946	2990	4347	4347					0.14589509619077035
AVLAPLIALVY	11	Unmodified	_AVLAPLIALVY_					0	0	0		ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2	ENSG00000213593|ENST00000278422|TMX2	ENSG00000213593|ENST00000278422|TMX2	MULTI-SECPEP	A375_MHC_IP_R2	2	572.2625122070312	2	571.862818	1141.71108	-0.11658	-6.667E-05	-0.50976	-0.00029151	-0.62635	-0.00035818	571.8624480691258	136.37	0.20207	136.48	136.35	136.55	0.11134					6	3	2	0	0	0	0.9398	1	53590	53590		28.487	22.755	1	2330400			4446	9573	2946	2990	4348	4348					0.14589509619077035
AVLDNPYPV	9	Unmodified	_AVLDNPYPV_					0	0	0		nc|ENSG00000100983|P48637-2|GSS;ENSG00000100983|ENST00000651619|GSS	nc|ENSG00000100983|P48637-2|GSS	nc|ENSG00000100983|P48637-2|GSS	MULTI-MSMS	A375_MHC_IP_R1	1	494.6604309082031	2	494.260925	986.507297	-0.35187	-0.00017391	-0.81248	-0.00040157	-1.1643	-0.00057549	494.2609737731992	83.244	0.5088	83.244	82.974	83.483	0					20	9	3	0	0	0	0.46038	1	30487	30487		21.747	0	1	2407300			4447	2239	2947	2991	4349	4349					0.01350365177609092
AVLDTYCNQCY	11	Unmodified	_AVLDTYCNQCY_					0	0	0			REV__SELP|p.R63C|2|0.31|ENSG00000174175|chr1:169617322-169617322|G/A|missense_variant	REV__SELP|p.R63C|2|0.31|ENSG00000174175|chr1:169617322-169617322|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	647.1673583984375	2	646.767931	1291.52131	-0.42038	-0.00027189	-0.37334	-0.00024146	-0.79371	-0.00051335	646.7674911372193	33.266	0.45644	33.266	33.04	33.496	0					14	8	2	0	0	0	0.67989	1	10862	10862		17.113	0.96379	1	4552600	+		4448	27937	2948	2992	4350	4350					-0.11279093447910782
AVLDTYCNQCY	11	Unmodified	_AVLDTYCNQCY_					0	0	0			REV__SELP|p.R63C|2|0.31|ENSG00000174175|chr1:169617322-169617322|G/A|missense_variant	REV__SELP|p.R63C|2|0.31|ENSG00000174175|chr1:169617322-169617322|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	646.767931	1291.52131	-0.71744	-0.00046402	-0.58093	-0.00037573	-1.2984	-0.00083974	646.7675793516651	32.529	0.45745	33.266	33.061	33.518	0.73691	0.00013035	-0.00010208	NaN	17.113	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3865400	+		4449	27937	2948	2992							-0.11279093447910782
AVLGGKLYV	9	Unmodified	_AVLGGKLYV_					0	0	0		ENSG00000162413|ENST00000377658|KLHL21;KLHL21|p.S517F|1|0.44|ENSG00000162413|chr1:6593609-6593609|G/A|missense_variant	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-SECPEP	A375_MHC_IP_R2	2	459.8744812011719	2	460.284203	918.553853	-0.59139	-0.00027221	0.6375	0.00029343	0.046109	2.1223E-05	460.28446342938105	66.217	0.61226	66.955	66.68	67.292	0.73811					24	11	3	0	0	0	0.14422	1	25093	25093		43.858	5.6827	1	9934400			4450	6530	2949	2993	4351	4351					0.09131849799553038
AVLGSGAIDDL	11	Unmodified	_AVLGSGAIDDL_					0	0	0			REV__nc|ENSG00000148842|Q9H8M5-2|CNNM2	REV__nc|ENSG00000148842|Q9H8M5-2|CNNM2	MULTI-MSMS	A375_MHC_IP_R2	2	516.2283935546875	2	515.774396	1029.53424	-1.3252	-0.0006835	-0.88732	-0.00045765	-2.2125	-0.0011412	515.7742513576314	53.035	0.71291	53.786	53.588	54.301	0.75105					17	13	2	0	0	0	0.43635	1	20061	20061		36.127	3.8215	1	2949200	+		4451	19650	2950	2994	4352	4352					0.02065428998139396
AVLGSPFP	8	Unmodified	_AVLGSPFP_					0	0	0			REV__nc|ENSG00000145506|Q969F2-2|NKD2	REV__nc|ENSG00000145506|Q969F2-2|NKD2	MSMS	A375_MHC_IP_R1	1	394.28045654296875	2	394.221072	786.42759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.624	1	32.624	32.124	33.124	0								0	0	0	0.16876	1	10557	10557		19.439	0	1		+		4452	27276	2951	2995	4353	4353					0.025833432942818035
AVLGSPFP	8	Unmodified	_AVLGSPFP_					0	0	0			REV__nc|ENSG00000145506|Q969F2-2|NKD2	REV__nc|ENSG00000145506|Q969F2-2|NKD2	MULTI-MSMS	A375_MHC_IP_R2	2	394.2803039550781	2	394.221072	786.42759	-0.18441	-7.27E-05	-1.1051	-0.00043567	-1.2896	-0.00050837	394.22058848788214	31.639	0.51081	32.375	32.044	32.555	0.73691					11	9	2	0	0	0	0.77488	1	11271	11271		13.508	4.1604	1	1207100	+		4453	27276	2951	2995	4354	4354					0.025833432942818035
AVLHSGFPQ	9	Unmodified	_AVLHSGFPQ_					0	0	0		ENSG00000158555|ENST00000336898|GDPD5;nc|ENSG00000158555|Q8WTR4-5|GDPD5;nc|ENSG00000158555|Q8WTR4-4|GDPD5;nc|ENSG00000158555|Q8WTR4-3|GDPD5;nc|ENSG00000158555|Q8WTR4-2|GDPD5	ENSG00000158555|ENST00000336898|GDPD5	ENSG00000158555|ENST00000336898|GDPD5	MULTI-MSMS	A375_MHC_IP_R1	1	478.6539001464844	2	478.253434	954.492316	-0.36302	-0.00017362	3.1793	0.0015205	2.8162	0.0013469	478.2550099501031	56.657	0.86372	56.657	56.041	56.905	0					25	16	2	0	0	0	0.65721	1	20356	20356		10.824	1.4408	1	1450900			4454	6314	2952	2996	4355	4355					0.013249181002947807
AVLHSGFPQ	9	Unmodified	_AVLHSGFPQ_					0	0	0		ENSG00000158555|ENST00000336898|GDPD5;nc|ENSG00000158555|Q8WTR4-5|GDPD5;nc|ENSG00000158555|Q8WTR4-4|GDPD5;nc|ENSG00000158555|Q8WTR4-3|GDPD5;nc|ENSG00000158555|Q8WTR4-2|GDPD5	ENSG00000158555|ENST00000336898|GDPD5	ENSG00000158555|ENST00000336898|GDPD5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	478.253434	954.492316	-0.36302	-0.00017362	3.1793	0.0015205	2.8162	0.0013469	478.2550099501031	56.657	0.86372	56.657	56.041	56.905	0	0.17236	0.00033972	NaN	10.824	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1450900			4455	6314	2952	2996							0.013249181002947807
AVLHSGFPQ	9	Unmodified	_AVLHSGFPQ_					0	0	0		ENSG00000158555|ENST00000336898|GDPD5;nc|ENSG00000158555|Q8WTR4-5|GDPD5;nc|ENSG00000158555|Q8WTR4-4|GDPD5;nc|ENSG00000158555|Q8WTR4-3|GDPD5;nc|ENSG00000158555|Q8WTR4-2|GDPD5	ENSG00000158555|ENST00000336898|GDPD5	ENSG00000158555|ENST00000336898|GDPD5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	478.253434	954.492316	-0.6303	-0.00030144	2.5621	0.0012253	1.9318	0.0009239	478.25487521773084	55.562	0.60978	56.312	56.084	56.694	0.75075	-0.17236	-0.00025057	NaN	10.824	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3388800			4456	6314	2952	2996							0.013249181002947807
AVLLLRRPG	9	Unmodified	_AVLLLRRPG_					0	0	0			REV__ENSG00000181104|ENST00000319211|F2R	REV__ENSG00000181104|ENST00000319211|F2R	MULTI-SECPEP	A375_MHC_IP_R1	1	498.2296447753906	2	497.829643	993.644734	-0.55806	-0.00027782	0.31374	0.00015619	-0.24432	-0.00012163	497.82970076269066	39.567	0.45368	39.567	39.391	39.845	0					13	8	2	0	0	0	0.60012	1	13553	13553		18.135	4.6271	1	6603700	+		4457	21638	2953	2997	4356	4356					0.14765738567700737
AVLPSRVYW	9	Unmodified	_AVLPSRVYW_					0	0	0		nc|ENSG00000100395|Q969R5-2|L3MBTL2;nc|ENSG00000100395|Q969R5-3|L3MBTL2;ENST00000466589.5_1_22:41601366-41623356:+|nuORF;ENSG00000100395|ENST00000216237|L3MBTL2;ENST00000479978.5_1_22:41615341-41623356:+|nuORF	nc|ENSG00000100395|Q969R5-2|L3MBTL2	nc|ENSG00000100395|Q969R5-2|L3MBTL2	MULTI-SECPEP	A375_MHC_IP_R1	1	546.2042846679688	2	545.805834	1089.59712	-0.42807	-0.00023364	-1.2948	-0.00070669	-1.7228	-0.00094034	545.8047600312806	82.825	0.91114	82.825	82.163	83.075	0					32	17	3	0	0	0	0.69179	1	30256	30256		29.082	29.082	1	3003700			4458	2173	2954	2998	4357	4357					0.055900395768503586
AVLPSRVYW	9	Unmodified	_AVLPSRVYW_					0	0	0		nc|ENSG00000100395|Q969R5-2|L3MBTL2;nc|ENSG00000100395|Q969R5-3|L3MBTL2;ENST00000466589.5_1_22:41601366-41623356:+|nuORF;ENSG00000100395|ENST00000216237|L3MBTL2;ENST00000479978.5_1_22:41615341-41623356:+|nuORF	nc|ENSG00000100395|Q969R5-2|L3MBTL2	nc|ENSG00000100395|Q969R5-2|L3MBTL2	MULTI-SECPEP	A375_MHC_IP_R2	2	545.7014770507812	2	545.805834	1089.59712	-0.85498	-0.00046665	-1.8116	-0.00098878	-2.6666	-0.0014554	545.8044967937017	81.931	1.0163	82.674	82.229	83.246	0.74293					26	19	2	0	0	0	0.69179	1	31104	31104		29.082	29.082	1	3766300			4459	2173	2954	2998	4358	4358					0.055900395768503586
AVLPTVIICV	10	Unmodified	_AVLPTVIICV_					0	0	0		nc|ENSG00000114013|P42081-2|CD86;nc|ENSG00000114013|P42081-5|CD86;nc|ENSG00000114013|P42081-6|CD86;nc|ENSG00000114013|P42081-3|CD86;ENSG00000114013|ENST00000330540|CD86	nc|ENSG00000114013|P42081-2|CD86	nc|ENSG00000114013|P42081-2|CD86	MSMS	A375_MHC_IP_R2	2	514.3303833007812	2	514.314646	1026.61474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.577	1	75.315	74.815	75.815	0.73752								0	0	0	0.15047	1	28307	28307		16.942	1.0951	1				4460	3190	2955	2999	4359	4359					0.10249618787497639
AVLSFEHSL	9	Unmodified	_AVLSFEHSL_					0	0	0			REV__KIF20B|p.E1695Gfs*11|1|0.6|ENSG00000138182|chr10:89768376-89768377|-/A|frameshift_variant	REV__KIF20B|p.E1695Gfs*11|1|0.6|ENSG00000138182|chr10:89768376-89768377|-/A|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	501.69720458984375	2	501.766374	1001.5182	-0.44199	-0.00022178	-0.37349	-0.00018741	-0.81549	-0.00040918	501.7663845669279	95.59	0.45325	95.59	95.364	95.817	0					11	8	2	0	0	0	0.5339	1	35096	35096		18.135	2.2878	1	509780	+		4461	19074	2956	3000	4360	4360					0.01749767551905279
AVLSGSLGWL	10	Unmodified	_AVLSGSLGWL_					0	0	0			REV__ENSG00000255587|ENST00000612677|RAB44	REV__ENSG00000255587|ENST00000612677|RAB44	MSMS	A375_MHC_IP_R1	1	501.69012451171875	2	501.784567	1001.55458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.4	1	115.4	114.9	115.9	0								0	0	0	0.15451	1	42321	42321		6.2058	0.47393	1		+		4462	22878	2957	3001	4361	4361					0.05386644448606148
AVLSILRLL	9	Unmodified	_AVLSILRLL_					0	0	0		ENST00000359135.7_1_2:189157519-189157720:+|nuORF	ENST00000359135.7_1_2:189157519-189157720:+|nuORF	ENST00000359135.7_1_2:189157519-189157720:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	499.7415771484375	2	499.342052	996.669552	-0.41186	-0.00020566	-0.1995	-9.9619E-05	-0.61136	-0.00030528	499.34179018203366	128.91	0.15393	128.91	128.84	128.99	0					4	2	2	0	0	0	0.047602	1	49569	49569		65.235	6.5562	1	6424300			4463	11008	2958	3002	4362	4362					0.17108373650421527
AVLSILRLL	9	Unmodified	_AVLSILRLL_					0	0	0		ENST00000359135.7_1_2:189157519-189157720:+|nuORF	ENST00000359135.7_1_2:189157519-189157720:+|nuORF	ENST00000359135.7_1_2:189157519-189157720:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	499.342052	996.669552	-0.61079	-0.00030499	-0.23537	-0.00011753	-0.84616	-0.00042252	499.34192706532366	128.64	0.15132	128.88	128.76	128.91	0.23946	-0.014921	-3.9222E-06	NaN	65.235	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6355300			4464	11008	2958	3002							0.17108373650421527
AVLTGITGL	9	Unmodified	_AVLTGITGL_					0	0	0			REV__nc|ENSG00000115607|O95256-2|IL18RAP	REV__nc|ENSG00000115607|O95256-2|IL18RAP	MULTI-MSMS	A375_MHC_IP_R2	2	423.16064453125	2	422.760561	843.506569	-0.068521	-2.8968E-05	0.14225	6.0136E-05	0.073726	3.1168E-05	422.7605732468411	63.735	0.65988	64.475	64.191	64.85	0.74022					27	12	3	0	0	0	0.021919	1	24150	24150		81.864	3.8797	1	5645200	+		4465	17899	2959	3003	4363	4363					0.07855570528568023
AVLTSARYAPS	11	Unmodified	_AVLTSARYAPS_					0	0	0			REV__ENST00000584979.1_1_18:14361435-14361894:-|nuORF	REV__ENST00000584979.1_1_18:14361435-14361894:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	378.58416748046875	3	379.208384	1134.60332	-0.37439	-0.00014197	0.063829	2.4204E-05	-0.31056	-0.00011777	379.20838666637485	28.407	0.50536	29.086	28.808	29.313	0.67857					13	9	2	0	0	0	0.97636	1	9788	9788		15.538	6.2947	1	4294500	+		4466	26372	2960	3004	4364	4364					0.04140513017682679
AVLTTHHHW	9	Unmodified	_AVLTTHHHW_					0	0	0		ENSG00000103253|ENST00000389703|HAGHL;nc|ENSG00000103253|Q6PII5|HAGHL;nc|ENSG00000103253|Q6PII5-3|HAGHL;nc|ENSG00000103253|Q6PII5-4|HAGHL;ENST00000569143.1_1_16:777475-778030:+|nuORF;ENST00000567696.1_1_16:777676-778482:+|nuORF	ENSG00000103253|ENST00000389703|HAGHL	ENSG00000103253|ENST00000389703|HAGHL	MULTI-SECPEP	A375_MHC_IP_R1	1	368.2578125	3	367.857797	1100.55156	0.087304	3.2115E-05	-0.40388	-0.00014857	-0.31658	-0.00011645	367.85776762729773	24.322	0.30471	24.322	24.143	24.447	0					12	5	3	0	0	0	0.62767	1	6912	6912		16.149	12.562	1	4572700			4467	2436	2961	3005	4365	4365					0.005308141144723777
AVLTTHHHW	9	Unmodified	_AVLTTHHHW_					0	0	0		ENSG00000103253|ENST00000389703|HAGHL;nc|ENSG00000103253|Q6PII5|HAGHL;nc|ENSG00000103253|Q6PII5-3|HAGHL;nc|ENSG00000103253|Q6PII5-4|HAGHL;ENST00000569143.1_1_16:777475-778030:+|nuORF;ENST00000567696.1_1_16:777676-778482:+|nuORF	ENSG00000103253|ENST00000389703|HAGHL	ENSG00000103253|ENST00000389703|HAGHL	MULTI-SECPEP	A375_MHC_IP_R2	2	368.2578430175781	3	367.857797	1100.55156	-0.10531	-3.874E-05	0.051392	1.8905E-05	-0.053921	-1.9835E-05	367.8577248922916	23.539	0.30335	24.169	23.979	24.283	0.63015					7	5	2	0	0	0	0.69504	1	7631	7631		8.1555	0	1	2556100			4468	2436	2961	3005	4366	4366					0.005308141144723777
AVLVKGLL	8	Unmodified	_AVLVKGLL_					0	0	0			REV__nc|ENSG00000117868|A0FGR8-5|ESYT2	REV__nc|ENSG00000117868|A0FGR8-5|ESYT2	MULTI-SECPEP	A375_MHC_IP_R2	2	407.18414306640625	2	406.783839	811.553125	0.14211	5.7807E-05	0.38055	0.0001548	0.52266	0.00021261	406.7839006241751	86.801	0.65961	87.534	87.255	87.914	0.733					16	12	2	0	0	0	0.90224	1	33036	33036		19.439	1.304	1	2354600	+		4469	18023	2962	3006	4367	4367					0.1398105515053203
AVMAETLGW	9	Unmodified	_AVMAETLGW_					0	0	0			REV__LOXL4|p.E452K|1|0.5|ENSG00000138131|chr10:98256854-98256854|C/T|missense_variant	REV__LOXL4|p.E452K|1|0.5|ENSG00000138131|chr10:98256854-98256854|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	489.1636047363281	2	489.241678	976.468803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.482	1	42.257	41.757	42.757	0.77451								0	0	0	0.14812	1	15395	15395		24.674	0	1		+		4470	19068	2963	3007	4368	4368					-0.020372637285504425
AVMLVIPLSY	10	Unmodified	_AVMLVIPLSY_					0	0	0			REV__ENSG00000144452|ENST00000272895|ABCA12	REV__ENSG00000144452|ENST00000272895|ABCA12	MULTI-SECPEP	A375_MHC_IP_R1	1	553.7037963867188	2	553.319928	1104.6253	-0.45679	-0.00025275	3.3608	0.0018596	2.904	0.0016068	553.8235217332925	35.16	0.20476	35.16	35.013	35.218	0					6	3	2	0	0	0	0.9269	1	11632	11632		3.5965	0	1	1044300	+		4471	19424	2964	3008	4369	4369					0.07717601441936495
AVMTSEVSPCW	11	Unmodified	_AVMTSEVSPCW_					0	0	0		ENST00000395053.7_1_20:62701563-62701860:+|nuORF	ENST00000395053.7_1_20:62701563-62701860:+|nuORF	ENST00000395053.7_1_20:62701563-62701860:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	404.2961120605469	3	403.84747	1208.52058	-0.4456	-0.00017995	1.7458	0.00070503	1.3002	0.00052508	403.84765553385563	60.558	0.25495	60.558	60.363	60.618	0					5	4	2	0	0	0	0.99881	1	21787	21787		0.50596	0.10524	1	606010			4472	11464	2965	3009	4370	4370					-0.07533888096941155
AVNFTQEEW	9	Unmodified	_AVNFTQEEW_					0	0	0		ENSG00000196757|ENST00000254321|ZNF700;ENSG00000197054|ENST00000358987|ZNF763;nc|ENSG00000197054|Q0D2J5-2|ZNF763;ENSG00000257446|ENST00000547628|ZNF878;nc|ENSG00000196418|Q15973-5|ZNF124;nc|ENSG00000196418|Q15973-4|ZNF124;ZNF124|p.T339Nfs*9|1|0.57|ENSG00000196418|chr1:247156606-247156607|-/T|frameshift_variant;ENSG00000196418|ENST00000543802|ZNF124;ENSG00000223547|ENST00000439326|ZNF844;nc|ENSG00000171291|Q8NDP4|ZNF439;ENSG00000171291|ENST00000682736|ZNF439;ENSG00000198429|ENST00000429654|ZNF69;ENSG00000171295|ENST00000304060|ZNF440;ENSG00000188295|ENST00000448299|ZNF669;nc|ENSG00000188295|Q96BR6|ZNF669;nc|ENSG00000204644|Q9NU63-2|ZFP57;ENSG00000204644|ENST00000376883|ZFP57	ENSG00000196757|ENST00000254321|ZNF700;ENSG00000257446|ENST00000547628|ZNF878;nc|ENSG00000171291|Q8NDP4|ZNF439;ENSG00000188295|ENST00000448299|ZNF669;nc|ENSG00000204644|Q9NU63-2|ZFP57	ENSG00000257446|ENST00000547628|ZNF878	MULTI-SECPEP	A375_MHC_IP_R1	1	561.9771118164062	2	562.256371	1122.49819	-0.35442	-0.00019927	-0.15015	-8.4421E-05	-0.50456	-0.00028369	562.7578237064167	88.587	0.61109	88.587	88.103	88.714	0					16	11	2	0	0	0	0.51395	1	32522	32522		31.268	31.268	1	2648100			4473	9081;9910;7590;8897;9473	2966	3010	4371	4371					-0.058160281787195345
AVNHVFEPV	9	Unmodified	_AVNHVFEPV_					0	0	0			REV__nc|ENSG00000170921|Q9HCD6|TANC2	REV__nc|ENSG00000170921|Q9HCD6|TANC2	MULTI-MSMS	A375_MHC_IP_R2	2	507.241455078125	2	506.266542	1010.51853	-0.66496	-0.00033665	-0.97437	-0.00049329	-1.6393	-0.00082994	506.26626250521167	88.481	0.91191	89.213	88.621	89.533	0.7318					32	17	3	0	0	0	0.62719	1	33632	33632		13.508	1.8676	1	2114500	+		4474	21033	2967	3011	4372	4372					0.01369187271757255
AVNPGDNC	8	Unmodified	_AVNPGDNC_					0	0	0		ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;DMXL2|p.T2022Hfs*16|1|0.5|ENSG00000104093|chr15:51481042-51481042|T/-|frameshift_variant;DMXL2|p.I1754Lfs*19|1|0.32|ENSG00000104093|chr15:51486296-51486296|A/-|frameshift_variant;nc|ENSG00000104093|Q8TDJ6-2|DMXL2;ENST00000558507.1_1_15:51860668-51914742:-|nuORF	ENSG00000104093|ENST00000560891|DMXL2	ENSG00000104093|ENST00000560891|DMXL2	MULTI-SECPEP	A375_MHC_IP_R2	2	789.82470703125	1	789.319579	788.312302	-0.93607	-0.00073886	-0.066561	-5.2538E-05	-1.0026	-0.0007914	789.319669977875	125.86	0.30434	126.15	125.92	126.23	0.2951					6	5	2	0	0	0	0.972	1	49165	49165		10.183	0.83596	1	9312300			4475	2485	2968	3012	4373	4373					-0.09032128899025338
AVNPLLRVI	9	Unmodified	_AVNPLLRVI_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	497.6973571777344	2	497.824027	993.633501	-0.30158	-0.00015013	0.050075	2.4928E-05	-0.2515	-0.0001252	497.8239809123141	96.786	0.70921	96.786	96.478	97.187	0					36	13	3	0	0	0	0.027983	1	35588	35588		92.491	37.718	1	12301000			4476	2175	2969	3013	4374	4374					0.13642916473577316
AVNPLLRVI	9	Unmodified	_AVNPLLRVI_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	498.22406005859375	2	497.824027	993.633501	-0.38689	-0.0001926	-0.0464	-2.3099E-05	-0.43329	-0.0002157	497.82396530179557	95.719	0.96627	96.469	96.093	97.059	0.75045					42	18	4	0	0	0	0.20567	1	36288	36288		46.021	0	1	16580000			4477	2175	2969	3013	4375	4375					0.13642916473577316
AVNPRDPPSW	10	Unmodified	_AVNPRDPPSW_					0	0	0		nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	MULTI-MSMS	A375_MHC_IP_R1	1	570.1854858398438	2	569.78563	1137.55671	-0.33996	-0.0001937	0.075831	4.3208E-05	-0.26413	-0.0001505	569.7856180775827	46.426	0.90947	46.426	45.941	46.85	0					48	17	4	0	0	0	0.0025034	3	16210	16210;16347;16351		97.741	62.129	1	12779000			4478	4857	2970	3014	4376;4377;4378	4376					-0.006569268135990569
AVNPRDPPSW	10	Unmodified	_AVNPRDPPSW_					0	0	0		nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	MULTI-MSMS	A375_MHC_IP_R2	2	570.18505859375	2	569.78563	1137.55671	-0.3177	-0.00018102	-0.044692	-2.5465E-05	-0.36239	-0.00020649	569.7855013787866	45.737	0.95978	46.502	45.997	46.957	0.76519					46	18	3	0	0	0	0.017482	2	16998	16998;17235		87.258	49.284	1	11725000			4479	4857	2970	3014	4379;4380	4379					-0.006569268135990569
AVNPTPSSW	9	Unmodified	_AVNPTPSSW_					0	0	0		nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-4|DOCK4;ENST00000486186.1_7:111368332-111379399:-|nuORF	nc|ENSG00000128512|Q8N1I0|DOCK4	nc|ENSG00000128512|Q8N1I0|DOCK4	MULTI-MSMS	A375_MHC_IP_R1	1	958.4918212890625	1	958.462872	957.455596	0.079081	7.5797E-05	-0.067509	-6.4705E-05	0.011572	1.1091E-05	958.462534435303	60.128	0.40676	60.128	59.905	60.312	0					11	7	2	0	0	0	0.70886	1	21574	21574		6.2058	1.8765	1	1158500			4480	4139	2971	3015	4381	4381					-0.024833785162854838
AVNPTPSSW	9	Unmodified	_AVNPTPSSW_					0	0	0		nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-4|DOCK4;ENST00000486186.1_7:111368332-111379399:-|nuORF	nc|ENSG00000128512|Q8N1I0|DOCK4	nc|ENSG00000128512|Q8N1I0|DOCK4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	958.462872	957.455596	0.079081	7.5797E-05	-0.067509	-6.4705E-05	0.011572	1.1091E-05	958.462534435303	60.128	0.40676	60.128	59.905	60.312	0	-0.029134	-0.00026932	NaN	6.2058	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1158500			4481	4139	2971	3015							-0.024833785162854838
AVNPTPSSW	9	Unmodified	_AVNPTPSSW_					0	0	0		nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-4|DOCK4;ENST00000486186.1_7:111368332-111379399:-|nuORF	nc|ENSG00000128512|Q8N1I0|DOCK4	nc|ENSG00000128512|Q8N1I0|DOCK4	MULTI-MATCH	A375_MHC_IP_R2	2		1	958.462872	957.455596	-0.51849	-0.00049695	0.33256	0.00031875	-0.18593	-0.0001782	958.4633469634098	59.439	0.35291	60.186	59.996	60.349	0.74714	0.029134	0.00011413	NaN	6.2058	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	733550			4482	4139	2971	3015							-0.024833785162854838
AVNQQQEV	8	Unmodified	_AVNQQQEV_					0	0	0		ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	MULTI-MSMS	A375_MHC_IP_R1	1	458.6297302246094	2	458.230156	914.445759	-0.25436	-0.00011656	-0.29838	-0.00013673	-0.55274	-0.00025328	458.2299447925122	96.01	0.86365	96.01	95.614	96.478	0					36	16	3	0	0	0	0.7758	1	35247	35247		10.183	10.183	1	5562100			4483	6155	2972	3016	4382	4382					-0.0148856652166387
AVNQQQEV	8	Unmodified	_AVNQQQEV_					0	0	0		ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	MULTI-MSMS	A375_MHC_IP_R2	2	458.6301574707031	2	458.230156	914.445759	-0.071514	-3.277E-05	-0.40238	-0.00018438	-0.47389	-0.00021715	458.22992748714177	95.015	0.81388	95.765	95.533	96.347	0.75045					30	15	3	0	0	0	0.7758	1	36101	36101		10.183	0.83596	1	6903200			4484	6155	2972	3016	4383	4383					-0.0148856652166387
AVNQQQEV	8	Unmodified	_AVNQQQEV_					0	0	0		ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	458.230156	914.445759	-0.25436	-0.00011656	-0.29838	-0.00013673	-0.55274	-0.00025328	458.2299447925122	96.01	0.86365	96.01	95.614	96.478	0	0.12229	5.2264E-05	NaN	10.183	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5562100			4485	6155	2972	3016							-0.0148856652166387
AVPAHCCIL	9	Unmodified	_AVPAHCCIL_					0	0	0		ENSG00000233436|ENST00000422652|BTBD18	ENSG00000233436|ENST00000422652|BTBD18	ENSG00000233436|ENST00000422652|BTBD18	MULTI-SECPEP	A375_MHC_IP_R1	1	464.13323974609375	2	463.732966	925.451379	-0.23964	-0.00011113	1.0834	0.00050239	0.84373	0.00039127	463.7333505004657	96.055	0.60873	96.055	95.767	96.376	0					26	11	3	0	0	0	0.64653	1	35267	35267		14.582	14.582	1	2786300			4486	9735	2973	3017	4384	4384					-0.01432882535209501
AVPAHCCIL	9	Unmodified	_AVPAHCCIL_					0	0	0		ENSG00000233436|ENST00000422652|BTBD18	ENSG00000233436|ENST00000422652|BTBD18	ENSG00000233436|ENST00000422652|BTBD18	MULTI-MATCH	A375_MHC_IP_R2	2		2	463.732966	925.451379	-0.37317	-0.00017305	1.034	0.0004795	0.66083	0.00030645	463.733345166837	95.361	0.71516	96.111	95.836	96.551	0.75045	0.027909	-1.4295E-05	NaN	14.582	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2316000			4487	9735	2973	3017							-0.01432882535209501
AVPDHPIHL	9	Unmodified	_AVPDHPIHL_					0	0	0			REV__ENSG00000023892|ENST00000316637|DEF6	REV__ENSG00000023892|ENST00000316637|DEF6	MULTI-SECPEP	A375_MHC_IP_R1	1	500.1922912597656	2	499.774534	997.534515	-0.52257	-0.00026117	-2.1364	-0.0010677	-2.6589	-0.0013289	499.77351986990413	80.499	0.65847	80.499	80.086	80.744	0					15	12	2	0	0	0	0.64653	1	29361	29361		9.3474	5.0182	1	1171700	+		4488	16284	2974	3018	4385	4385					0.035648935086555866
AVPFPPSHRL	10	Unmodified	_AVPFPPSHRL_					0	0	0		nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA;nc|ENSG00000138814|Q08209-4|PPP3CA	nc|ENSG00000138814|Q08209-3|PPP3CA	nc|ENSG00000138814|Q08209-3|PPP3CA	MULTI-MSMS	A375_MHC_IP_R1	1	374.2706604003906	3	374.213581	1119.61891	0.33185	0.00012418	-1.4345	-0.00053682	-1.1027	-0.00041263	374.21291185787237	28.406	0.55544	28.406	28.088	28.643	0					22	10	3	0	0	0	0.71455	1	8637	8637		5.7834	0.48655	1	8310800			4489	5040	2975	3019	4386	4386					0.06388844325419996
AVPPALRGP	9	Unmodified	_AVPPALRGP_					0	0	0			REV__ENSG00000260220|ENST00000638797|CCDC187	REV__ENSG00000260220|ENST00000638797|CCDC187	MULTI-MSMS	A375_MHC_IP_R1	1	439.2942199707031	2	439.266345	876.518136	-0.058682	-2.5777E-05	0.093697	4.1158E-05	0.035014	1.5381E-05	439.26636073808237	38.86	5.133	38.86	37.556	42.689	0					293	100	5	0	0	0	0.2264	2	13940	13940;14023		36.044	5.8194	1	188910000	+		4490	22905	2976	3020	4387;4388	4387					0.07493812342568162
AVPPPPSSV	9	Unmodified	_AVPPPPSSV_					0	0	0		nc|ENSG00000159217|Q9NZI8-2|IGF2BP1;ENSG00000159217|ENST00000290341|IGF2BP1	nc|ENSG00000159217|Q9NZI8-2|IGF2BP1	nc|ENSG00000159217|Q9NZI8-2|IGF2BP1	MULTI-MSMS	A375_MHC_IP_R1	1	426.1367492675781	2	425.737086	849.459619	9.1714E-05	3.9046E-08	0.36709	0.00015629	0.36718	0.00015632	425.7371274621083	43.339	1.8849	43.339	42.638	44.523	0					79	36	3	0	0	0	0.03063	1	14893	14893		74.423	30.016	1	7165800			4491	6360	2977	3021	4389	4389					0.028867109774296296
AVPPPPSSV	9	Unmodified	_AVPPPPSSV_					0	0	0		nc|ENSG00000159217|Q9NZI8-2|IGF2BP1;ENSG00000159217|ENST00000290341|IGF2BP1	nc|ENSG00000159217|Q9NZI8-2|IGF2BP1	nc|ENSG00000159217|Q9NZI8-2|IGF2BP1	MULTI-MSMS	A375_MHC_IP_R2	2	426.1371765136719	2	425.737086	849.459619	-0.087869	-3.7409E-05	0.0011773	5.0124E-07	-0.086692	-3.6908E-05	425.7369968704	42.674	2.2303	43.446	42.656	44.887	0.7724					91	43	3	0	0	0	0.03063	1	15694	15694		74.423	20.847	1	10785000			4492	6360	2977	3021	4390	4390					0.028867109774296296
AVPPPTKVV	9	Unmodified	_AVPPPTKVV_					0	0	0		ENSG00000141867|ENST00000679869|BRD4;nc|ENSG00000141867|O60885-2|BRD4;nc|ENSG00000141867|O60885-3|BRD4;BRD4|p.S470F|2|0.22|ENSG00000141867|chr19:15257106-15257106|G/A|missense_variant	ENSG00000141867|ENST00000679869|BRD4	ENSG00000141867|ENST00000679869|BRD4	MULTI-MSMS	A375_MHC_IP_R1	1	454.32965087890625	2	454.284203	906.553853	-0.093248	-4.2361E-05	0.16972	7.71E-05	0.076469	3.4739E-05	454.28411176076594	35.344	0.7142	35.344	35.013	35.727	0					17	13	2	0	0	0	0.51106	1	11728	11728		19.257	1.122	1	1606600			4493	5275	2978	3022	4391	4391					0.09683849799569089
AVQASTPPP	9	Unmodified	_AVQASTPPP_					0	0	0			REV__ENSG00000176986|ENST00000345254|SEC24C	REV__ENSG00000176986|ENST00000345254|SEC24C	MSMS	A375_MHC_IP_R2	2	434.1422119140625	2	434.232168	866.449782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.566	1	41.341	40.841	41.841	0.77451								0	0	0	0.15486	1	15025	15025		12.532	0.89125	1		+		4494	21433	2979	3023	4392	4392					0.011215229720392017
AVQDANVEA	9	Unmodified	_AVQDANVEA_					0	0	0			REV__CON__Q32PJ2	REV__CON__Q32PJ2	MULTI-SECPEP	A375_MHC_IP_R1	1	459.1219787597656	2	458.722164	915.429775	-0.035135	-1.6117E-05	-0.44657	-0.00020485	-0.48171	-0.00022097	458.7219501457257	92.362	0.91374	92.362	92.059	92.973	0					36	17	3	0	0	0	0.65246	1	33907	33907		15.847	0	1	7854800	+	+	4495	15883	2980	3024	4393	4393					-0.03132272758580257
AVQDANVEA	9	Unmodified	_AVQDANVEA_					0	0	0			REV__CON__Q32PJ2	REV__CON__Q32PJ2	MULTI-SECPEP	A375_MHC_IP_R2	2	459.1217346191406	2	458.722164	915.429775	-0.26407	-0.00012114	-0.62865	-0.00028838	-0.89272	-0.00040951	458.7218415799399	91.672	0.75911	92.407	92.021	92.78	0.7345					32	14	3	0	0	0	0.65246	1	34818	34818		15.847	0	1	8844400	+	+	4496	15883	2980	3024	4394	4394					-0.03132272758580257
AVQDFLHEI	9	Unmodified	_AVQDFLHEI_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	A375_MHC_IP_R1	1	536.6764526367188	2	536.277106	1070.53966	-0.66773	-0.00035809	-0.10042	-5.3853E-05	-0.76815	-0.00041194	536.2770217873697	96.47	0.55863	96.47	96.223	96.781	0					17	10	2	0	0	0	0.20567	1	35484	35484		37.974	19.828	1	3270600			4497	7927	2981	3025	4395	4395					0.007211525806042118
AVQDFLHEI	9	Unmodified	_AVQDFLHEI_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	A375_MHC_IP_R2	2	536.6766357421875	2	536.277106	1070.53966	-0.73549	-0.00039443	0.11016	5.9077E-05	-0.62533	-0.00033535	536.2771801714505	95.657	0.50839	96.407	96.144	96.653	0.75045					21	9	3	0	0	0	0.033557	2	36340	36329;36340		71.922	18.714	1	3586100			4498	7927	2981	3025	4396;4397	4397					0.007211525806042118
AVQEWRSWFRR	11	Unmodified	_AVQEWRSWFRR_					0	0	0			REV__ENSG00000173714|ENST00000311378|WFIKKN2	REV__ENSG00000173714|ENST00000311378|WFIKKN2	MULTI-SECPEP	A375_MHC_IP_R2	2	508.2004089355469	3	507.600498	1519.77966	-0.6723	-0.00034126	1.2266	0.00062265	0.55434	0.00028138	507.601348474722	63.838	0.20268	64.578	64.446	64.648	0.74022					6	3	2	0	0	0	0.99916	1	24228	24228		2.4348	1.1051	1	477060	+		4499	21244	2982	3026	4398	4398					0.040565669714624164
AVQGGGAYF	9	Unmodified	_AVQGGGAYF_					0	0	0		nc|ENSG00000146828|Q9BXP2-3|SLC12A9;nc|ENSG00000146828|Q9BXP2-4|SLC12A9;ENSG00000146828|ENST00000354161|SLC12A9;ENST00000462106.1_1_7:100451807-100453521:+|nuORF	nc|ENSG00000146828|Q9BXP2-3|SLC12A9	nc|ENSG00000146828|Q9BXP2-3|SLC12A9	MSMS	A375_MHC_IP_R2	2	435.2821960449219	2	435.211235	868.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.833	1	68.568	68.068	69.068	0.73511								0	0	0	0.15486	1	25705	25705		4.756	1.8668	1				4500	5638	2983	3027	4399	4399					-0.031550327164836744
AVQGKQFHW	9	Unmodified	_AVQGKQFHW_					0	0	0		ENSG00000105855|ENST00000222573|ITGB8;nc|ENSG00000105855|P26012-2|ITGB8	ENSG00000105855|ENST00000222573|ITGB8	ENSG00000105855|ENST00000222573|ITGB8	MULTI-SECPEP	A375_MHC_IP_R1	1	367.9259948730469	3	367.526047	1099.55631	0.28203	0.00010365	-0.037125	-1.3645E-05	0.2449	9.0008E-05	367.5259916692501	34.835	0.60956	34.835	34.557	35.167	0					18	11	2	0	0	0	0.69504	1	11523	11523		12.241	12.241	1	63064000			4501	2644	2984	3028	4400	4400					0.010516982572426059
AVQLRWGPRRR	11	Unmodified	_AVQLRWGPRRR_					0	0	0		ENSG00000161638|ENST00000293379|ITGA5	ENSG00000161638|ENST00000293379|ITGA5	ENSG00000161638|ENST00000293379|ITGA5	MSMS	A375_MHC_IP_R1	1	465.62725830078125	3	465.612849	1393.81672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.285	1	45.285	44.785	45.785	0								0	0	0	0.16336	1	15840	15840		1.2148	0.10508	1				4502	6481	2985	3029	4401	4401					0.13556283307889316
AVQQKPSSLPP	11	Unmodified	_AVQQKPSSLPP_					0	0	0		ENST00000513565.6_1_5:122694091-122724023:-|nuORF;nc|ENSG00000168944|Q8N960-2|CEP120;ENSG00000168944|ENST00000306467|CEP120	ENST00000513565.6_1_5:122694091-122724023:-|nuORF	ENST00000513565.6_1_5:122694091-122724023:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	385.14007568359375	3	384.552151	1150.63462	0.32135	0.00012358	-3.776	-0.0014521	-3.4546	-0.0013285	384.8854401592975	33.858	0.30305	33.858	33.698	34.001	0					9	5	2	0	0	0	0.98397	1	11156	11156		17.863	5.6884	1	1489900			4503	7364	2986	3030	4402	4402					0.06533086051808823
AVQSDIPHQI	10	Unmodified	_AVQSDIPHQI_					0	0	0			REV__nc|ENSG00000147202|O60879-2|DIAPH2	REV__nc|ENSG00000147202|O60879-2|DIAPH2	MULTI-SECPEP	A375_MHC_IP_R1	1	554.1531982421875	2	554.293288	1106.57202	-0.76621	-0.00042471	-0.41982	-0.0002327	-1.186	-0.00065741	554.2927732096573	32.51	0.30144	32.51	32.333	32.634	0					10	5	3	0	0	0	0.8125	1	10506	10506		18.146	1.0335	1	2719100	+		4504	19577	2987	3031	4403	4403					0.0229993998361806
AVQSEPRSW	9	Unmodified	_AVQSEPRSW_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;ENST00000587429.1_1_19:14544333-14557253:+|nuORF	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-MSMS	A375_MHC_IP_R1	1	531.1655883789062	2	530.26453	1058.51451	-0.98487	-0.00052224	0.23639	0.00012535	-0.74847	-0.00039689	530.2646443791142	29.663	0.44501	29.663	29.353	29.798	0					12	8	2	0	0	0	0.017727	1	9303	9303		86.332	50.205	1	15035000			4505	3829	2988	3032	4404	4404					-0.012409022219571852
AVQSEPRSW	9	Unmodified	_AVQSEPRSW_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;ENST00000587429.1_1_19:14544333-14557253:+|nuORF	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-MSMS	A375_MHC_IP_R2	2	530.1494750976562	2	530.26453	1058.51451	-1.3926	-0.00073844	0.42855	0.00022724	-0.96403	-0.00051119	530.2646257402192	28.975	0.54692	29.674	29.434	29.981	0.69872					17	10	2	0	0	0	0.10622	1	10024	10024		49.554	5.696	1	13260000			4506	3829	2988	3032	4405	4405					-0.012409022219571852
AVRHLCLQSWR	11	Unmodified	_AVRHLCLQSWR_					0	0	0			REV__ENSG00000182327|ENST00000331264|GLTPD2	REV__ENSG00000182327|ENST00000331264|GLTPD2	MSMS	A375_MHC_IP_R2	2	684.6036376953125	2	684.869505	1367.72446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.639	1	99.399	98.899	99.899	0.75977								0	0	0	0.16297	1	37419	37419		3.2813	0	1		+		4507	21683	2989	3033	4406	4406					0.05530437179368164
AVRLLHTHY	9	Unmodified	_AVRLLHTHY_					0	0	0		ENST00000557684.5_1_12:25267803-25348012:-|nuORF;nc|ENSG00000118307|Q6TDU7-4|DNAI7;nc|ENSG00000118307|Q6TDU7-2|DNAI7;nc|ENSG00000118307|Q6TDU7-3|DNAI7;nc|ENSG00000118307|Q6TDU7|DNAI7;ENSG00000118307|ENST00000395987|DNAI7	ENST00000557684.5_1_12:25267803-25348012:-|nuORF	ENST00000557684.5_1_12:25267803-25348012:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1485595703125	2	555.314358	1108.61416	-0.7976	-0.00044292	-1.4845	-0.00082437	-2.2821	-0.0012673	555.3134431290333	27.833	0.20272	28.511	28.401	28.604	0.67857					5	3	2	0	0	0	0.80101	1	9565	9565		8.5933	0	1	1303000			4508	3535	2990	3034	4407	4407					0.06419960182665818
AVRLLILILKL	11	Unmodified	_AVRLLILILKL_					0	0	0		nc|ENSG00000205583|P0CL83|STAG3L1;ENST00000569650.1_1_7:72469123-72470067:-|nuORF;ENST00000359898.5_7:74299379-74304447:-|nuORF	nc|ENSG00000205583|P0CL83|STAG3L1	nc|ENSG00000205583|P0CL83|STAG3L1	MSMS	A375_MHC_IP_R2	2	632.9696655273438	2	632.957584	1263.90061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.522	1	100.29	99.785	100.79	0.76278								0	0	0	0.16331	1	37751	37751		1.4819	1.4819	1				4509	14866	2991	3035	4408	4408					0.2792200163225971
AVRNPTGGKLH	11	Unmodified	_AVRNPTGGKLH_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	ENSG00000070371|ENST00000427926|CLTCL1	ENSG00000070371|ENST00000427926|CLTCL1	MULTI-MSMS	A375_MHC_IP_R2	2	384.6240539550781	3	383.887756	1148.64144	-0.45745	-0.00017561	-1.3789	-0.00052933	-1.8363	-0.00070494	383.88654261606104	38.415	2.1433	39.189	38.432	40.575	0.77451					85	41	3	0	0	0	0.69069	1	13998	13998		16.275	2.7559	1	75937000			4510	1491	2992	3036	4409	4409					0.07306443723041411
AVRRFRGKAVW	11	Unmodified	_AVRRFRGKAVW_					0	0	0		ENSG00000184857|ENST00000333050|TMEM186	ENSG00000184857|ENST00000333050|TMEM186	ENSG00000184857|ENST00000333050|TMEM186	MSMS	A375_MHC_IP_R2	2	673.55810546875	2	673.40183	1344.78911	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.38	1	134.52	134.02	135.02	0.13901								0	0	0	0.16334	1	52861	52861		1.3295	0.13619	1				4511	8613	2993	3037	4410	4410					0.13050380047684484
AVRTYIGPKK	10	Unmodified	_AVRTYIGPKK_					0	0	0			REV__ENSG00000197766|ENST00000327726|CFD	REV__ENSG00000197766|ENST00000327726|CFD	MULTI-MSMS	A375_MHC_IP_R1	1	378.28564453125	3	378.232752	1131.67643	0.50949	0.0001927	0.18805	7.1127E-05	0.69754	0.00026383	378.567132772435	51.777	0.30617	51.777	51.676	51.982	0					6	5	2	0	0	0	0.70312	1	18466	18466		10.899	1.5158	1	679800	+		4512	22311	2994	3038	4411	4411					0.11585686530997918
AVRTYIGPKK	10	Unmodified	_AVRTYIGPKK_					0	0	0			REV__ENSG00000197766|ENST00000327726|CFD	REV__ENSG00000197766|ENST00000327726|CFD	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	378.232752	1131.67643	0.50949	0.0001927	0.18805	7.1127E-05	0.69754	0.00026383	378.567132772435	51.777	0.30617	51.777	51.676	51.982	0	0	0	NaN	10.899	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	679800	+		4513	22311	2994	3038							0.11585686530997918
AVSAFTALAV	10	Unmodified	_AVSAFTALAV_					0	0	0			REV__ENSG00000131899|ENST00000316843|LLGL1	REV__ENSG00000131899|ENST00000316843|LLGL1	MULTI-SECPEP	A375_MHC_IP_R2	2	475.1604919433594	2	475.271293	948.528032	-0.49458	-0.00023506	0.036972	1.7572E-05	-0.4576	-0.00021749	475.2712079773243	63.071	0.50687	63.813	63.584	64.091	0.74263					16	9	2	0	0	0	0.57563	1	23923	23923		25.399	0	1	2587900	+		4514	18626	2995	3039	4412	4412					0.05170955557275647
AVSEEEEL	8	Unmodified	_AVSEEEEL_					0	0	0			REV__ENST00000334805.10_1_11:72492260-72504101:-|nuORF	REV__ENST00000334805.10_1_11:72492260-72504101:-|nuORF	MSMS	A375_MHC_IP_R1	1	453.16241455078125	2	453.208555	904.402557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.04	1	105.04	104.54	105.54	0								0	0	0	0.16876	1	38564	38564		10.183	0	1		+		4515	23662	2996	3040	4413	4413					-0.05346801089615383
AVSEEEEL	8	Unmodified	_AVSEEEEL_					0	0	0			REV__ENST00000334805.10_1_11:72492260-72504101:-|nuORF	REV__ENST00000334805.10_1_11:72492260-72504101:-|nuORF	MSMS	A375_MHC_IP_R2	2	453.162109375	2	453.208555	904.402557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.08	1	104.84	104.34	105.34	0.76308								0	0	0	0.16876	1	39389	39389		10.183	0	1		+		4516	23662	2996	3040	4414	4414					-0.05346801089615383
AVSERIFSY	9	Unmodified	_AVSERIFSY_					0	0	0			REV__nc|ENSG00000104133|Q96JI7-2|SPG11	REV__nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-SECPEP	A375_MHC_IP_R1	1	536.5651245117188	2	536.277106	1070.53966	-0.71778	-0.00038493	-0.32502	-0.0001743	-1.0428	-0.00055923	536.2769079643476	75.618	0.45274	75.618	75.362	75.815	0					21	8	3	0	0	0	0.69507	1	27566	27566		9.3831	0	1	2649000	+		4517	17305	2997	3041	4415	4415					0.007211525806042118
AVSESVQLQY	10	Unmodified	_AVSESVQLQY_					0	0	0			REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2	REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2	MULTI-SECPEP	A375_MHC_IP_R2	2	562.6848754882812	2	562.285128	1122.5557	-0.71532	-0.00040221	0.12953	7.2833E-05	-0.58579	-0.00032938	562.2851197417218	49.015	0.8134	49.772	49.332	50.145	0.75736					33	15	3	0	0	0	0.17241	1	18355	18355		71.922	6.4486	1	7795600	+		4518	22806	2998	3042	4416	4416					-0.0006718597312556085
AVSFVLMVI	9	Unmodified	_AVSFVLMVI_					0	0	0			REV__OR2M2|p.P210S|1|0.36|ENSG00000198601|chr1:248180613-248180613|C/T|missense_variant	REV__OR2M2|p.P210S|1|0.36|ENSG00000198601|chr1:248180613-248180613|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	489.68768310546875	2	489.788264	977.561975	-0.52851	-0.00025886	0.28068	0.00013747	-0.24783	-0.00012139	489.7881802576379	67.553	0.40839	68.289	68.052	68.461	0.73631					10	7	2	0	0	0	0.69504	1	25617	25617		7.9102	0	1	1161600	+		4519	27662	2999	3043	4417	4417					0.07229660724692621
AVSGLSHV	8	Unmodified	_AVSGLSHV_					0	0	0		ENST00000469042.5_1_3:132298334-132378619:-|nuORF;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11;nc|ENSG00000240303|Q709F0-3|ACAD11	ENST00000469042.5_1_3:132298334-132378619:-|nuORF	ENST00000469042.5_1_3:132298334-132378619:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	385.6136779785156	2	385.213778	768.413003	0.22844	8.7997E-05	-0.29095	-0.00011208	-0.062517	-2.4082E-05	385.21359555879684	25.415	0.55976	25.415	25.154	25.714	0					18	10	3	0	0	0	0.69059	1	7431	7431		46.921	2.5139	1	3985000			4520	9772	3000	3044	4418	4418					0.019532711461465624
AVSGSKEVLHF	11	Unmodified	_AVSGSKEVLHF_					0	0	0		ENST00000609118.1_1_1:111505930-111506428:+|nuORF	ENST00000609118.1_1_1:111505930-111506428:+|nuORF	ENST00000609118.1_1_1:111505930-111506428:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	588.3507080078125	2	587.316763	1172.61897	-0.44483	-0.00026125	0.47859	0.00028108	0.033763	1.983E-05	587.3169432320658	46.903	0.82047	46.903	46.596	47.416	0					44	15	5	0	0	0	0.67989	1	16541	16541		17.113	2.2746	1	26527000			4521	13932	3001	3045	4419	4419					0.0395679953473973
AVSHDRSYL	9	Unmodified	_AVSHDRSYL_					0	0	0			REV__ENST00000601333.1_1_19:39306255-39306727:-|nuORF	REV__ENST00000601333.1_1_19:39306255-39306727:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	524.1486206054688	2	524.26453	1046.51451	-0.55916	-0.00029315	-1.028	-0.00053897	-1.5872	-0.00083211	524.2643210044232	32.485	0.60896	33.222	32.96	33.569	0.73692					38	11	5	0	0	0	0.67483	1	11655	11655		14.838	5.2943	1	17730000	+		4522	17341	3002	3046	4420	4420					-0.0068890222196387185
AVSKDIANW	9	Unmodified	_AVSKDIANW_					0	0	0		ENSG00000101161|ENST00000266079|PRPF6;nc|ENSG00000101161|O94906-2|PRPF6;PRPF6|p.K924N|1|0.24|ENSG00000101161|chr20:64032939-64032939|G/T|missense_variant	ENSG00000101161|ENST00000266079|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	MULTI-SECPEP	A375_MHC_IP_R1	1	502.6640625	2	502.263999	1002.51345	0.10871	5.4599E-05	0.29751	0.00014943	0.40622	0.00020403	502.26437964764057	49.012	1.216	49.012	48.577	49.793	0					33	23	3	0	0	0	0.14572	1	17314	17314		62.573	20.733	1	4638500			4523	2259	3003	3047	4421	4421					0.012288834091350509
AVSKDIANW	9	Unmodified	_AVSKDIANW_					0	0	0		ENSG00000101161|ENST00000266079|PRPF6;nc|ENSG00000101161|O94906-2|PRPF6;PRPF6|p.K924N|1|0.24|ENSG00000101161|chr20:64032939-64032939|G/T|missense_variant	ENSG00000101161|ENST00000266079|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	MULTI-SECPEP	A375_MHC_IP_R2	2	502.6635437011719	2	502.263999	1002.51345	-0.58164	-0.00029214	0.93035	0.00046728	0.34871	0.00017514	502.2644429566294	48.251	1.112	49.008	48.578	49.69	0.75736					31	21	3	0	0	0	0.10103	1	18102	18102		62.573	24.599	1	3974200			4524	2259	3003	3047	4422	4422					0.012288834091350509
AVSKDKTW	8	Unmodified	_AVSKDKTW_					0	0	0			REV__nc|ENSG00000124140|Q9H2X9|SLC12A5	REV__nc|ENSG00000124140|Q9H2X9|SLC12A5	MULTI-SECPEP	A375_MHC_IP_R1	1	468.1532287597656	2	467.753267	933.491981	-0.52163	-0.00024399	0.11068	5.1773E-05	-0.41094	-0.00019222	467.75339364500707	39.819	0.5589	39.819	39.592	40.151	0					20	10	3	0	0	0	0.69059	1	13651	13651		46.921	14.615	1	3573600	+		4525	18273	3004	3048	4423	4423					0.022574983804247495
AVSKDKTW	8	Unmodified	_AVSKDKTW_					0	0	0			REV__nc|ENSG00000124140|Q9H2X9|SLC12A5	REV__nc|ENSG00000124140|Q9H2X9|SLC12A5	MULTI-SECPEP	A375_MHC_IP_R2	2	468.15283203125	2	467.753267	933.491981	-0.85552	-0.00040017	-0.061631	-2.8828E-05	-0.91715	-0.000429	467.75331240415574	38.955	0.4607	39.729	39.504	39.965	0.77451					17	8	3	0	0	0	0.8211	1	14372	14372		38.151	9.6643	1	5016000	+		4526	18273	3004	3048	4424	4424					0.022574983804247495
AVSLAVITV	9	Unmodified	_AVSLAVITV_					0	0	0			REV__ENSG00000126950|ENST00000372930|TMEM35A	REV__ENSG00000126950|ENST00000372930|TMEM35A	MULTI-MSMS	A375_MHC_IP_R1	1	436.6690673828125	2	436.776211	871.537869	0.12155	5.3091E-05	-2.6015	-0.0011363	-2.4799	-0.0010832	436.7750956097418	127.7	1.0134	127.7	127.42	128.43	0					35	19	2	0	0	0	0.58047	1	48914	48914		15.847	0	1	45916000	+		4527	18408	3005	3049	4425	4425					0.0969614356265538
AVSLAVITV	9	Unmodified	_AVSLAVITV_					0	0	0			REV__ENSG00000126950|ENST00000372930|TMEM35A	REV__ENSG00000126950|ENST00000372930|TMEM35A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	436.776211	871.537869	-0.31282	-0.00013663	-3.1607	-0.0013805	-3.4735	-0.0015171	436.7747321948367	127.37	1.4232	127.64	127.36	128.78	0.26593	-0.028597	-0.00011525	NaN	15.847	58	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111730000	+		4528	18408	3005	3049							0.0969614356265538
AVSLDRYLK	9	Unmodified	_AVSLDRYLK_					0	0	0		ENSG00000124818|ENST00000371211|OPN5	ENSG00000124818|ENST00000371211|OPN5	ENSG00000124818|ENST00000371211|OPN5	MSMS	A375_MHC_IP_R2	2	355.45977783203125	3	355.541475	1063.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.57	1	48.332	47.832	48.832	0.76128								0	0	0	0.15486	1	17841	17841		4.897	0	1				4529	3936	3006	3050	4426	4426					0.07333718368636255
AVSLIREEW	9	Unmodified	_AVSLIREEW_					0	0	0		ENSG00000198315|ENST00000330236|ZKSCAN8	ENSG00000198315|ENST00000330236|ZKSCAN8	ENSG00000198315|ENST00000330236|ZKSCAN8	MULTI-SECPEP	A375_MHC_IP_R1	1	552.1980590820312	2	551.798206	1101.58186	-0.56365	-0.00031102	-0.28288	-0.00015609	-0.84652	-0.00046711	551.7979656625827	77.384	0.60728	77.384	77.032	77.639	0					20	11	3	0	0	0	0.27742	1	28246	28246		51.63	17.228	1	2123800			4530	9254	3007	3051	4427	4427					0.03513127989003806
AVSLIREEW	9	Unmodified	_AVSLIREEW_					0	0	0		ENSG00000198315|ENST00000330236|ZKSCAN8	ENSG00000198315|ENST00000330236|ZKSCAN8	ENSG00000198315|ENST00000330236|ZKSCAN8	MULTI-MSMS	A375_MHC_IP_R2	2	552.7000732421875	2	551.798206	1101.58186	-0.77333	-0.00042672	0.66479	0.00036683	-0.10854	-5.989E-05	551.7982169304316	76.511	0.50796	77.251	77.045	77.553	0.74052					12	9	2	0	0	0	0.41856	1	29069	29069		31.268	12.011	1	1954700			4531	9254	3007	3051	4428	4428					0.03513127989003806
AVSLLWSCWES	11	Unmodified	_AVSLLWSCWES_					0	0	0			REV__nc|ENSG00000126217|O15068-8|MCF2L	REV__nc|ENSG00000126217|O15068-8|MCF2L	MSMS	A375_MHC_IP_R2	2	640.7333374023438	2	640.802631	1279.59071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.299	1	100.06	99.559	100.56	0.75977								0	0	0	0.16051	1	37668	37668		13.906	0.86358	1		+		4532	27208	3008	3052	4429	4429					-0.03790266436840284
AVSLPRTRLY	10	Unmodified	_AVSLPRTRLY_					0	0	0			REV__ENST00000531791.1_1_11:65149642-65149978:-|nuORF	REV__ENST00000531791.1_1_11:65149642-65149978:-|nuORF	MSMS	A375_MHC_IP_R2	2	588.3511352539062	2	588.348397	1174.68224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.467	1	47.232	46.732	47.732	0.76519								0	0	0	0.15283	1	17403	17403		11.64	1.5664	1		+		4533	25856	3009	3053	4430	4430					0.10188785042646487
AVSLRSCSY	9	Unmodified	_AVSLRSCSY_					0	0	0		ENST00000420176.5_2_2:96991157-96991292:+|nuORF	ENST00000420176.5_2_2:96991157-96991292:+|nuORF	ENST00000420176.5_2_2:96991157-96991292:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	493.6422119140625	2	493.242209	984.469866	-0.48667	-0.00024005	0.2998	0.00014787	-0.18688	-9.2176E-05	493.2422486738897	39.953	1.1195	39.953	39.592	40.712	0					41	21	3	0	0	0	0.053555	1	13666	13666		90.135	40.466	1	10566000			4534	11724	3010	3054	4431	4431					-0.022990493596580563
AVSLRSCSY	9	Unmodified	_AVSLRSCSY_					0	0	0		ENST00000420176.5_2_2:96991157-96991292:+|nuORF	ENST00000420176.5_2_2:96991157-96991292:+|nuORF	ENST00000420176.5_2_2:96991157-96991292:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	493.641845703125	2	493.242209	984.469866	-0.62818	-0.00030984	-0.21289	-0.00010501	-0.84107	-0.00041485	493.24199681201407	39.134	1.2208	39.908	39.607	40.828	0.77451					53	23	3	0	0	0	0.02331	1	14424	14424		80.676	34.655	1	9898500			4535	11724	3010	3054	4432	4432					-0.022990493596580563
AVSQGTPDVNT	11	Unmodified	_AVSQGTPDVNT_					0	0	0			REV__nc|ENSG00000089012|Q9P1W8-2|SIRPG	REV__nc|ENSG00000089012|Q9P1W8-2|SIRPG	MULTI-SECPEP	A375_MHC_IP_R2	2	544.155029296875	2	544.76456	1087.51457	-0.70571	-0.00038445	1.3532	0.00073719	0.64751	0.00035274	544.7652049428964	46.424	0.66077	47.189	46.755	47.416	0.76519					16	12	2	0	0	0	0.98524	1	17288	17288		10.8	3.5103	1	992610	+		4536	16899	3011	3055	4433	4433					-0.025689470126280867
AVSRLQQL	8	Unmodified	_AVSRLQQL_					0	0	0		ENST00000405510.5_2_22:39131979-39132159:-|nuORF	ENST00000405510.5_2_22:39131979-39132159:-|nuORF	ENST00000405510.5_2_22:39131979-39132159:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	457.6348876953125	2	457.774534	913.534515	-0.30765	-0.00014083	-0.28818	-0.00013192	-0.59583	-0.00027276	457.7744725094602	44.474	0.60812	45.243	44.833	45.441	0.7691					16	11	2	0	0	0	0.88903	1	16547	16547		30.637	3.7529	1	1110800			4537	11592	3012	3056	4434	4434					0.07428893508676992
AVSSLLRVL	9	Unmodified	_AVSSLLRVL_					0	0	0		nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;MON2|p.L1675Ffs*21|1|0.57|ENSG00000061987|chr12:62592617-62592618|-/T|frameshift_variant;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF	nc|ENSG00000061987|Q7Z3U7-2|MON2	nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-MSMS	A375_MHC_IP_R1	1	479.70794677734375	2	479.30821	956.601866	-0.64661	-0.00030993	0.056463	2.7063E-05	-0.59015	-0.00028286	479.30819534470686	85.691	0.50884	85.691	85.412	85.921	0					16	9	2	0	0	0	0.11296	1	31391	31391		48.346	4.4876	1	6735200			4538	1324	3013	3057	4435	4435					0.12182923719615246
AVSSTKGA	8	Unmodified	_AVSSTKGA_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	A375_MHC_IP_R2	2	720.0588989257812	1	720.388645	719.381368	-0.73628	-0.00053041	0.80715	0.00058147	0.070873	5.1056E-05	720.3895792832386	125.33	0.65392	125.63	125.42	126.07	0.2951					13	12	2	0	0	0	0.77123	1	48760	48760		14.582	4.3983	1	24058000			4539	5879	3014	3058	4436	4436					0.01045278392189175
AVSVNPSVV	9	Unmodified	_AVSVNPSVV_					0	0	0			REV__ENST00000446660.5_1_2:55496202-55496262:-|nuORF	REV__ENST00000446660.5_1_2:55496202-55496262:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	436.6473388671875	2	436.247818	870.481082	-0.22652	-9.8818E-05	-0.50984	-0.00022242	-0.73636	-0.00032124	436.2475463535588	63.459	0.71228	64.199	63.885	64.597	0.74022					22	13	2	0	0	0	0.077132	1	24023	24023		54.774	3.9185	1	4934300	+		4540	24857	3015	3059	4437	4437					0.040660960061472906
AVSVNPSVV	9	Unmodified	_AVSVNPSVV_					0	0	0			REV__ENST00000446660.5_1_2:55496202-55496262:-|nuORF	REV__ENST00000446660.5_1_2:55496202-55496262:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	436.247818	870.481082	-0.17373	-7.5789E-05	0.0034226	1.4931E-06	-0.17031	-7.4296E-05	436.2477700041117	64.267	0.55684	64.267	63.939	64.495	0	0.033905	0.00022393	NaN	54.774	28	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4664000	+		4541	24857	3015	3059							0.040660960061472906
AVSWRRGRSRR	11	Unmodified	_AVSWRRGRSRR_					0	0	0			REV__ENST00000371753.5_1_9:138902765-138903128:-|nuORF	REV__ENST00000371753.5_1_9:138902765-138903128:-|nuORF	MSMS	A375_MHC_IP_R2	2	462.66845703125	3	462.936103	1385.78648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.25	1	133.42	132.92	133.92	0.16487								0	0	0	0.16334	1	52419	52419		0.45452	0.046251	1		+		4542	24052	3016	3060	4438	4438					0.10901924642712402
AVTALAARTW	10	Unmodified	_AVTALAARTW_					0	0	0		nc|ENSG00000130770|Q9UII2-2|ATP5IF1;nc|ENSG00000130770|Q9UII2-3|ATP5IF1;ENSG00000130770|ENST00000335514|ATP5IF1	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	MULTI-SECPEP	A375_MHC_IP_R1	1	530.6529541015625	2	530.300916	1058.58728	-0.60882	-0.00032286	-0.38382	-0.00020354	-0.99264	-0.0005264	530.3005216182949	61.05	1.0687	61.05	60.719	61.788	0					34	20	2	0	0	0	0.024623	1	22035	22035		104.48	52.216	1	18097000			4543	14601	3017	3061	4439	4439					0.0603285157146729
AVTALAARTW	10	Unmodified	_AVTALAARTW_					0	0	0		nc|ENSG00000130770|Q9UII2-2|ATP5IF1;nc|ENSG00000130770|Q9UII2-3|ATP5IF1;ENSG00000130770|ENST00000335514|ATP5IF1	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	MULTI-MSMS	A375_MHC_IP_R2	2	530.7001342773438	2	530.300916	1058.58728	-0.93388	-0.00049524	-0.40778	-0.00021625	-1.3417	-0.00071149	530.3005691231019	60.133	0.55832	60.88	60.553	61.111	0.74714					19	10	2	0	0	0	0.011226	1	22741	22741		125.18	81.323	1	16772000			4544	14601	3017	3061	4440	4440					0.0603285157146729
AVTEDELF	8	Unmodified	_AVTEDELF_					0	0	0			REV__ENSG00000111647|ENST00000279907|BLTP3B	REV__ENSG00000111647|ENST00000279907|BLTP3B	MULTI-SECPEP	A375_MHC_IP_R2	2	462.12060546875	2	462.221465	922.428378	-0.42802	-0.00019784	0.48744	0.0002253	0.059413	2.7462E-05	462.22208825313186	84.206	0.56412	84.946	84.458	85.022	0.73962					12	10	2	0	0	0	0.96296	1	31942	31942		15.768	2.2603	1	1622500	+		4545	17682	3018	3062	4441	4441					-0.03593906847322614
AVTGILVQL	9	Unmodified	_AVTGILVQL_					0	0	0		ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123;ENST00000487805.6_1_3:49750857-49758735:+|nuORF	ENSG00000164068|ENST00000327697|RNF123	ENSG00000164068|ENST00000327697|RNF123	MULTI-SECPEP	A375_MHC_IP_R1	1	914.0073852539062	1	913.571694	912.564418	-0.3472	-0.0003172	0.56185	0.00051329	0.21464	0.00019609	913.5721433299582	131.3	0.55429	131.3	131.18	131.73	0					25	10	5	0	0	0	0.083712	1	50773	50773		56.177	0	1	281640000			4546	6769	3019	3063	4442	4442					0.10463832454001931
AVTGRLLVVS	10	Unmodified	_AVTGRLLVVS_					0	0	0		ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;MROH1|p.S548F|1|0.38|ENSG00000179832|chr8:144239624-144239624|C/T|missense_variant;ENST00000544576.1_1_8:145294015-145297158:+|nuORF;nc|ENSG00000179832|Q8NDA8-7|MROH1	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-SECPEP	A375_MHC_IP_R1	1	508.21856689453125	2	507.818941	1013.62333	-0.47492	-0.00024117	-0.16468	-8.363E-05	-0.6396	-0.0003248	507.8187941681765	76.521	0.96519	76.521	76.219	77.184	0					41	18	4	0	0	0	0.51493	1	27856	27856		31.268	0	1	14031000			4547	8251	3020	3064	4443	4443					0.1170630874833023
AVTKCDQEW	9	Unmodified	_AVTKCDQEW_					0	0	0			REV__AGPAT4|p.R152C|2|0.62|ENSG00000026652|chr6:161154205-161154205|G/A|missense_variant	REV__AGPAT4|p.R152C|2|0.62|ENSG00000026652|chr6:161154205-161154205|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	540.1470336914062	2	540.244949	1078.47534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.927	1	48.688	48.188	49.188	0.76128								0	0	0	0.1535	1	17985	17985		15.847	2.8047	1		+		4548	15344	3021	3065	4444	4444					-0.060753705678507686
AVTREKIVC	9	Unmodified	_AVTREKIVC_					0	0	0			REV__ENSG00000258315|ENST00000439424|C17orf49	REV__ENSG00000258315|ENST00000439424|C17orf49	MULTI-SECPEP	A375_MHC_IP_R2	2	509.6565856933594	2	509.789327	1017.5641	-0.6798	-0.00034656	0.61196	0.00031197	-0.067841	-3.4585E-05	509.78959416380934	42.606	0.30527	43.379	43.167	43.472	0.7724					8	5	2	0	0	0	0.73363	1	15864	15864		6.7232	0	1	866660	+		4549	22896	3022	3066	4445	4445					0.05602089462490767
AVTSLERVL	9	Unmodified	_AVTSLERVL_					0	0	0		ENST00000381031.7_1_22:46689600-46689630:+|nuORF	ENST00000381031.7_1_22:46689600-46689630:+|nuORF	ENST00000381031.7_1_22:46689600-46689630:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	494.69512939453125	2	494.295299	986.576045	-0.26345	-0.00013022	-0.23223	-0.00011479	-0.49569	-0.00024502	494.29509137015043	88.505	0.5593	88.505	88.256	88.815	0					17	10	2	0	0	0	0.2487	1	32468	32468		34.402	0.29928	1	3992700			4550	11364	3023	3067	4446	4446					0.08222029477337855
AVTSLERVL	9	Unmodified	_AVTSLERVL_					0	0	0		ENST00000381031.7_1_22:46689600-46689630:+|nuORF	ENST00000381031.7_1_22:46689600-46689630:+|nuORF	ENST00000381031.7_1_22:46689600-46689630:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	494.295299	986.576045	-0.26345	-0.00013022	-0.23223	-0.00011479	-0.49569	-0.00024502	494.29509137015043	88.505	0.5593	88.505	88.256	88.815	0	0.037979	-0.00020284	NaN	34.402	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3992700			4551	11364	3023	3067							0.08222029477337855
AVTSQKLLI	9	Unmodified	_AVTSQKLLI_					0	0	0		VPS13B|p.A1194Ifs*14|1|0.16|ENSG00000132549|chr8:99467545-99467557|CTTGCTACGGGAC/-|frameshift_variant	VPS13B|p.A1194Ifs*14|1|0.16|ENSG00000132549|chr8:99467545-99467557|CTTGCTACGGGAC/-|frameshift_variant	VPS13B|p.A1194Ifs*14|1|0.16|ENSG00000132549|chr8:99467545-99467557|CTTGCTACGGGAC/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	487.207763671875	2	486.808042	971.601532	-0.54469	-0.00026516	-0.022117	-1.0767E-05	-0.56681	-0.00027593	486.80805775729436	78.534	0.50731	79.278	79.033	79.54	0.74474					13	9	2	0	0	0	0.3213	1	29841	29841		37.974	0	1	1811800			4552	30147	3024	3068	4447	4447					0.11459503999765275
AVTSSHGEEL	10	Unmodified	_AVTSSHGEEL_					0	0	0			REV__RNMT|p.E339Vfs*6|1|0.29|ENSG00000101654|chr18:13742528-13742529|-/TA|frameshift_variant	REV__RNMT|p.E339Vfs*6|1|0.29|ENSG00000101654|chr18:13742528-13742529|-/TA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	514.704833984375	2	515.246003	1028.47745	-0.68572	-0.00035331	0.11982	6.1737E-05	-0.5659	-0.00029158	515.2460099150824	92.883	0.66077	93.622	93.392	94.053	0.73902					29	12	3	0	0	0	0.90853	1	35360	35360		6.7232	0	1	7144700	+		4553	17181	3025	3069	4448	4448					-0.035646185583800616
AVTTSANEV	9	Unmodified	_AVTTSANEV_					0	0	0		ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENSG00000167037|ENST00000400358|SGSM1;ENST00000480523.1_1_22:25240737-25320238:+|nuORF;nc|ENSG00000167037|Q2NKQ1|SGSM1;nc|ENSG00000167037|Q2NKQ1-3|SGSM1	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	446.1084899902344	2	446.224539	890.434526	-0.17715	-7.9047E-05	-0.12999	-5.8005E-05	-0.30714	-0.00013705	446.2242589355348	39.515	0.30315	39.515	39.34	39.643	0					8	5	2	0	0	0	0.62767	1	13506	13506		11.64	2.8949	1	1167900			4554	7149	3026	3070	4449	4449					-0.015073886158120331
AVTTSANEV	9	Unmodified	_AVTTSANEV_					0	0	0		ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENSG00000167037|ENST00000400358|SGSM1;ENST00000480523.1_1_22:25240737-25320238:+|nuORF;nc|ENSG00000167037|Q2NKQ1|SGSM1;nc|ENSG00000167037|Q2NKQ1-3|SGSM1	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	446.1083068847656	2	446.224539	890.434526	-0.65048	-0.00029026	-0.28904	-0.00012898	-0.93952	-0.00041923	446.22444463152306	38.795	0.35847	39.569	39.401	39.76	0.77451					9	6	2	0	0	0	0.62767	1	14290	14290		23.148	5.0134	1	1446300			4555	7149	3026	3070	4450	4450					-0.015073886158120331
AVVEQIHKFAQ	11	Unmodified	_AVVEQIHKFAQ_					0	0	0		ENSG00000078142|ENST00000262039|PIK3C3;ENST00000587328.2_1_18:39644671-39661098:+|nuORF	ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	MULTI-SECPEP	A375_MHC_IP_R1	1	635.7504272460938	2	635.351137	1268.68772	-0.53764	-0.00034159	-0.14842	-9.4299E-05	-0.68606	-0.00043589	635.3507607731739	68.844	0.50642	68.844	68.666	69.173	0					14	9	2	0	0	0	0.53535	1	24984	24984		33.445	0	1	2509900			4556	1668	3027	3071	4451	4451					0.06412463834476512
AVVEQIHKFAQ	11	Unmodified	_AVVEQIHKFAQ_					0	0	0		ENSG00000078142|ENST00000262039|PIK3C3;ENST00000587328.2_1_18:39644671-39661098:+|nuORF	ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	MULTI-SECPEP	A375_MHC_IP_R2	2	635.7506103515625	2	635.351137	1268.68772	-0.69803	-0.00044349	-0.12726	-8.0852E-05	-0.82528	-0.00052434	635.350911601338	67.981	0.71211	68.716	68.409	69.121	0.73511					22	13	3	0	0	0	0.85086	1	25774	25774		22.658	1.0679	1	2660500			4557	1668	3027	3071	4452	4452					0.06412463834476512
AVVGAATAPV	10	Unmodified	_AVVGAATAPV_					0	0	0			REV__ENSG00000006047|ENST00000007699|YBX2	REV__ENSG00000006047|ENST00000007699|YBX2	MULTI-MSMS	A375_MHC_IP_R1	1	428.6500549316406	2	428.25036	854.486168	0.42769	0.00018316	-0.72957	-0.00031244	-0.30188	-0.00012928	428.24995134651607	44.94	0.65937	44.94	44.575	45.234	0					19	12	2	0	0	0	0.60556	1	15745	15745		20.454	2.3073	1	1781500	+		4558	16129	3028	3072	4453	4453					0.053103998687561216
AVVGGVVAV	9	Unmodified	_AVVGGVVAV_					0	0	0		ENSG00000165948|ENST00000555523|IFI27L1	ENSG00000165948|ENST00000555523|IFI27L1	ENSG00000165948|ENST00000555523|IFI27L1	MULTI-MSMS	A375_MHC_IP_R2	2	770.8766479492188	1	770.477066	769.469789	-0.97504	-0.00075124	0.022302	1.7183E-05	-0.95273	-0.00073406	770.4771055056656	74.481	0.35558	75.219	75.06	75.416	0.73752					9	6	2	0	0	0	0.071148	1	28331	28331		56.048	17.897	1	1135600			4559	7008	3029	3073	4454	4454					0.0758331870266602
AVVGVMRRPRR	11	Unmodified	_AVVGVMRRPRR_					0	0	0		ENST00000444165.1_1_1:148853888-148854101:-|nuORF	ENST00000444165.1_1_1:148853888-148854101:-|nuORF	ENST00000444165.1_1_1:148853888-148854101:-|nuORF	MSMS	A375_MHC_IP_R2	2	648.79248046875	2	648.893315	1295.77208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.76	1	141.79	141.29	142.29	0.030731								0	0	0	0.16331	1	55437	55437		1.4819	0.15237	1				4560	12013	3030	3074	4455	4455					0.13602136170220547
AVVHPLRY	8	Unmodified	_AVVHPLRY_					0	0	0		ENSG00000169508|ENST00000376414|GPR183	ENSG00000169508|ENST00000376414|GPR183	ENSG00000169508|ENST00000376414|GPR183	MULTI-SECPEP	A375_MHC_IP_R1	1	477.32037353515625	2	477.779619	953.544686	-0.47618	-0.00022751	0.7395	0.00035332	0.26332	0.00012581	477.77981713240905	53.443	0.70999	53.443	52.997	53.707	0					23	13	3	0	0	0	0.97144	1	18910	18910		5.2307	0	1	3886400			4561	7411	3031	3075	4456	4456					0.06605501233900668
AVVKLTAPP	9	Unmodified	_AVVKLTAPP_					0	0	0			REV__ENSG00000173546|ENST00000308508|CSPG4	REV__ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	A375_MHC_IP_R2	2	448.1065368652344	2	448.284203	894.553853	-0.31702	-0.00014211	-0.45873	-0.00020564	-0.77575	-0.00034775	448.28393744082945	76.33	0.35596	77.07	76.843	77.199	0.74052					9	6	2	0	0	0	0.73363	1	29006	29006		10.824	6.4947	1	786060	+		4562	21229	3032	3076	4457	4457					0.10235849799551033
AVVLETVKQA	10	Unmodified	_AVVLETVKQA_					0	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;ENST00000562067.5_1_15:75648526-75649181:-|nuORF;ENST00000561693.5_1_15:75648526-75649300:-|nuORF;ENST00000564929.5_1_15:75648526-75649229:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-SECPEP	A375_MHC_IP_R2	2	529.7160034179688	2	529.316232	1056.61791	-0.46448	-0.00024586	0.090474	4.7889E-05	-0.37401	-0.00019797	529.316187757581	91.108	0.45488	91.843	91.616	92.071	0.7345					14	8	2	0	0	0	0.85226	1	34665	34665		14.838	0	1	4598900			4563	5152	3033	3077	4458	4458					0.09186585165844008
AVVPKIFYV	9	Unmodified	_AVVPKIFYV_					0	0	0		nc|ENSG00000154217|Q9UKF7-2|PITPNC1;ENSG00000154217|ENST00000581322|PITPNC1;ENST00000581923.5_1_17:65529052-65574345:+|nuORF	nc|ENSG00000154217|Q9UKF7-2|PITPNC1	nc|ENSG00000154217|Q9UKF7-2|PITPNC1	MULTI-SECPEP	A375_MHC_IP_R1	1	518.7155151367188	2	518.315503	1034.61645	-0.5099	-0.00026429	0.30782	0.00015955	-0.20208	-0.00010474	518.3155514345307	100.26	0.45685	100.26	99.975	100.43	0					18	8	3	0	0	0	0.58271	1	36873	36873		20.454	7.9221	1	1963100			4564	6069	3034	3078	4459	4459					0.10052995867727077
AVVPKIFYV	9	Unmodified	_AVVPKIFYV_					0	0	0		nc|ENSG00000154217|Q9UKF7-2|PITPNC1;ENSG00000154217|ENST00000581322|PITPNC1;ENST00000581923.5_1_17:65529052-65574345:+|nuORF	nc|ENSG00000154217|Q9UKF7-2|PITPNC1	nc|ENSG00000154217|Q9UKF7-2|PITPNC1	MULTI-SECPEP	A375_MHC_IP_R2	2	518.7147216796875	2	518.315503	1034.61645	-0.52463	-0.00027192	-0.75048	-0.00038899	-1.2751	-0.00066091	518.314896226517	99.233	0.50964	99.993	99.758	100.27	0.75977					16	9	3	0	0	0	0.24479	1	37658	37658		34.102	1.9855	1	2176100			4565	6069	3034	3078	4460	4460					0.10052995867727077
AVVRHVEQVL	10	Unmodified	_AVVRHVEQVL_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	MULTI-MSMS	A375_MHC_IP_R1	1	384.2962341308594	3	383.89614	1148.66659	0.27982	0.00010742	0.075659	2.9045E-05	0.35548	0.00013647	383.89621478767253	34.076	1.52	34.076	33.698	35.218	0					75	29	5	0	0	0	0.57453	2	11396	11195;11396		22.775	3.149	1	239410000			4566	1631	3035	3079	4461;4462	4462					0.09820498525618859
AVVRLAFP	8	Unmodified	_AVVRLAFP_					0	0	0		ENST00000539506.5_1_12:132270282-132270423:+|nuORF	ENST00000539506.5_1_12:132270282-132270423:+|nuORF	ENST00000539506.5_1_12:132270282-132270423:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	436.689697265625	2	436.771263	871.527973	-0.077549	-3.3871E-05	0.14112	6.1639E-05	0.063576	2.7768E-05	436.7712655671292	33.656	0.25206	33.656	33.496	33.748	0					7	4	2	0	0	0	0.90224	1	10948	10948		19.439	0	1	1108800			4567	13262	3036	3080	4463	4463					0.08707000347931171
AVVSLKKKV	9	Unmodified	_AVVSLKKKV_					0	0	0			REV__ENST00000536939.1_1_11:63706535-63720038:+|nuORF	REV__ENST00000536939.1_1_11:63706535-63720038:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	485.6716613769531	2	486.334227	970.653902	-0.20577	-0.00010007	-0.59439	-0.00028907	-0.80016	-0.00038914	486.33376306922895	25.229	0.30351	25.229	25.104	25.408	0					7	5	2	0	0	0	0.77834	1	7401	7401		8.5933	0.68312	1	2136100	+		4568	25917	3037	3081	4464	4464					0.16740087133371162
AVVSVWSAF	9	Unmodified	_AVVSVWSAF_					0	0	0		ENSG00000124818|ENST00000371211|OPN5	ENSG00000124818|ENST00000371211|OPN5	ENSG00000124818|ENST00000371211|OPN5	MULTI-SECPEP	A375_MHC_IP_R1	1	483.65826416015625	2	483.258185	964.501818	-0.42853	-0.00020709	0.48191	0.00023289	0.053385	2.5799E-05	483.25836200720613	65.348	0.46013	65.348	65.105	65.565	0					16	8	2	0	0	0	0.62767	1	23670	23670		11.64	11.64	1	1354300			4569	3936	3038	3082	4465	4465					0.018146863858078177
AVVSVWSAF	9	Unmodified	_AVVSVWSAF_					0	0	0		ENSG00000124818|ENST00000371211|OPN5	ENSG00000124818|ENST00000371211|OPN5	ENSG00000124818|ENST00000371211|OPN5	MULTI-MATCH	A375_MHC_IP_R2	2		2	483.258185	964.501818	-0.5254	-0.0002539	0.012221	5.9057E-06	-0.51318	-0.000248	483.25816073516427	64.51	0.50942	65.251	64.954	65.463	0.74022	-0.048776	-0.0002537	NaN	11.64	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2027600			4570	3936	3038	3082							0.018146863858078177
AVVTIAVQL	9	Unmodified	_AVVTIAVQL_					0	0	0			REV__ENST00000471815.5_1_10:14572088-14646275:-|nuORF	REV__ENST00000471815.5_1_10:14572088-14646275:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	457.68951416015625	2	457.289485	912.564418	-0.47376	-0.00021665	0.55408	0.00025337	0.080314	3.6727E-05	457.2897004207572	131.3	0.70657	131.3	131.18	131.88	0					29	13	4	0	0	0	0.011031	1	50626	50626		133.7	18.01	1	176640000	+		4571	25125	3039	3083	4466	4466					0.10463832454001931
AVVTIAVQL	9	Unmodified	_AVVTIAVQL_					0	0	0			REV__ENST00000471815.5_1_10:14572088-14646275:-|nuORF	REV__ENST00000471815.5_1_10:14572088-14646275:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	457.689453125	2	457.289485	912.564418	-0.28528	-0.00013045	0.037032	1.6935E-05	-0.24824	-0.00011352	457.28945592317206	131.07	0.56035	131.29	131.11	131.67	0.2142					28	10	4	0	0	0	0.010819	1	51564	51564		120.45	0	1	146660000	+		4572	25125	3039	3083	4467	4467					0.10463832454001931
AVVTQVNKV	9	Unmodified	_AVVTQVNKV_					0	0	0		ENST00000527435.5_1_11:62529161-62533976:+|nuORF;ENSG00000168002|ENST00000301788|POLR2G;ENST00000526368.1_1_11:62530297-62533976:+|nuORF	ENST00000527435.5_1_11:62529161-62533976:+|nuORF	ENST00000527435.5_1_11:62529161-62533976:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	479.6897888183594	2	479.290017	956.565481	-0.83965	-0.00040244	0.32943	0.00015789	-0.51022	-0.00024454	479.2901969604311	29.145	0.3575	29.145	28.945	29.302	0					12	6	3	0	0	0	0.030038	1	9106	9106		74.929	20.155	1	3137700			4573	7251	3040	3084	4468	4468					0.0854604682289164
AVVTQVNKV	9	Unmodified	_AVVTQVNKV_					0	0	0		ENST00000527435.5_1_11:62529161-62533976:+|nuORF;ENSG00000168002|ENST00000301788|POLR2G;ENST00000526368.1_1_11:62530297-62533976:+|nuORF	ENST00000527435.5_1_11:62529161-62533976:+|nuORF	ENST00000527435.5_1_11:62529161-62533976:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	479.6893615722656	2	479.290017	956.565481	-1.0094	-0.00048378	-0.12073	-5.7865E-05	-1.1301	-0.00054165	479.2898902920152	28.445	0.25393	29.124	28.96	29.214	0.67857					8	4	2	0	0	0	0.05754	1	9859	9859		61.357	10.502	1	4175600			4574	7251	3040	3084	4469	4469					0.0854604682289164
AVWAAVQAV	9	Unmodified	_AVWAAVQAV_					0	0	0		ENSG00000196453|ENST00000247930|ZNF777	ENSG00000196453|ENST00000247930|ZNF777	ENSG00000196453|ENST00000247930|ZNF777	MULTI-MSMS	A375_MHC_IP_R1	1	458.15838623046875	2	457.758352	913.502152	-0.16972	-7.7691E-05	0.55678	0.00025487	0.38706	0.00017718	457.7585680415073	93.61	0.61154	93.61	93.279	93.89	0					20	11	2	0	0	0	0.030661	1	34408	34408		74.396	3.5318	1	1840800			4575	9043	3041	3085	4470	4470					0.04194106105649098
AVWAAVQAV	9	Unmodified	_AVWAAVQAV_					0	0	0		ENSG00000196453|ENST00000247930|ZNF777	ENSG00000196453|ENST00000247930|ZNF777	ENSG00000196453|ENST00000247930|ZNF777	MULTI-SECPEP	A375_MHC_IP_R2	2	458.15814208984375	2	457.758352	913.502152	-0.23801	-0.00010895	0.34702	0.00015885	0.10901	4.9901E-05	457.7583573642816	92.805	0.55618	93.544	93.24	93.797	0.73901					16	10	2	0	0	0	0.068175	1	35305	35305		74.396	33.948	1	1686300			4576	9043	3041	3085	4471	4471					0.04194106105649098
AVWAGPAQA	9	Unmodified	_AVWAGPAQA_					0	0	0		ENSG00000087074|ENST00000200453|PPP1R15A;nc|ENSG00000087074|O75807-2|PPP1R15A;ENST00000600406.1_2_19:49378777-49379227:+|nuORF	ENSG00000087074|ENST00000200453|PPP1R15A	ENSG00000087074|ENST00000200453|PPP1R15A	MULTI-SECPEP	A375_MHC_IP_R1	1	436.12677001953125	2	435.727052	869.439552	-0.1776	-7.7383E-05	-0.052879	-2.3041E-05	-0.23047	-0.00010042	435.7270144783699	57.898	0.5081	57.898	57.618	58.126	0					14	9	2	0	0	0	0.12259	1	20812	20812		63.563	25.412	1	1979300			4577	1851	3042	3086	4472	4472					-0.00039039962553033547
AVWKPLMKV	9	Unmodified	_AVWKPLMKV_					0	0	0		ENST00000460495.5_1_3:137956301-138014731:+|nuORF;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8;nc|ENSG00000114098|Q8IUR7-8|ARMC8;ENST00000466762.1_1_3:137982955-138014731:+|nuORF	ENST00000460495.5_1_3:137956301-138014731:+|nuORF	ENST00000460495.5_1_3:137956301-138014731:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	357.9292297363281	3	357.884296	1070.63106	-0.62125	-0.00022234	-0.54237	-0.00019411	-1.1636	-0.00041644	357.8840921603168	26.171	0.50798	26.831	26.653	27.161	0.65992					20	9	3	0	0	0	0.68705	1	8913	8913		8.1555	8.1555	1	6041500			4578	3196	3043	3087	4473	4473					0.09856744744229218
AVWPYRRL	8	Unmodified	_AVWPYRRL_					0	0	0		ATP13A1|p.G798Afs*55|1|0.25|ENSG00000105726|chr19:19649883-19649883|C/-|frameshift_variant;ENSG00000105726|ENST00000357324|ATP13A1;ENST00000487364.1_1_19:19771386-19774475:-|nuORF	ATP13A1|p.G798Afs*55|1|0.25|ENSG00000105726|chr19:19649883-19649883|C/-|frameshift_variant	ATP13A1|p.G798Afs*55|1|0.25|ENSG00000105726|chr19:19649883-19649883|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	354.6064453125	3	354.206538	1059.59778	0.35369	0.00012528	-0.13437	-4.7594E-05	0.21932	7.7685E-05	354.2064160907764	49.394	0.76113	49.394	49.084	49.845	0					28	14	3	0	0	0	0.72761	2	17459	17440;17459		20.454	20.454	1	6018300			4579	203	3044	3088	4474;4475	4475					0.07036879016550301
AVWPYRRL	8	Unmodified	_AVWPYRRL_					0	0	0		ATP13A1|p.G798Afs*55|1|0.25|ENSG00000105726|chr19:19649883-19649883|C/-|frameshift_variant;ENSG00000105726|ENST00000357324|ATP13A1;ENST00000487364.1_1_19:19771386-19774475:-|nuORF	ATP13A1|p.G798Afs*55|1|0.25|ENSG00000105726|chr19:19649883-19649883|C/-|frameshift_variant	ATP13A1|p.G798Afs*55|1|0.25|ENSG00000105726|chr19:19649883-19649883|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	531.2059326171875	2	530.806168	1059.59778	-0.43723	-0.00023208	0.69937	0.00037123	0.26215	0.00013915	531.3081129187844	51.592	0.40584	51.592	51.322	51.728	0					20	7	3	0	0	0	0.86263	1	18299	18299		26.341	26.341	1	6344200			4580	203	3044	3088	4476	4476					0.07036879016550301
AVWWREVEPTR	11	Unmodified	_AVWWREVEPTR_					0	0	0		ENST00000456101.6_1_6:109775989-109776820:-|nuORF	ENST00000456101.6_1_6:109775989-109776820:-|nuORF	ENST00000456101.6_1_6:109775989-109776820:-|nuORF	MSMS	A375_MHC_IP_R2	2	714.8721313476562	2	714.872768	1427.73098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.18	1	125.47	124.97	125.97	0.2951								0	0	0	0.15628	1	48685	48685		16.566	6.4153	1				4581	12125	3045	3089	4477	4477					0.0342265361173304
AVYEGHVSCV	10	Carbamidomethyl (C)	_AVYEGHVSC(Carbamidomethyl (C))V_	AVYEGHVSC(1)V		AVYEGHVSC(110)V		0	1	0		ENSG00000105887|ENST00000393085|MTPN	ENSG00000105887|ENST00000393085|MTPN	ENSG00000105887|ENST00000393085|MTPN	MULTI-MSMS	A375_MHC_IP_R1	1	561.1577758789062	2	560.758223	1119.50189	-0.50715	-0.00028439	-0.2067	-0.00011591	-0.71385	-0.0004003	560.7583743280887	33.351	0.5079	33.351	33.09	33.597	0					18	9	3	0	0	0	0.0087379	1	10854	10854		107.19	73.085	1	4279900			4582	2649	3046	3090	4478	4478	15				-0.05307681676526954
AVYFIRKEW	9	Unmodified	_AVYFIRKEW_					0	0	0		nc|ENSG00000166526|P17036-2|ZNF3;ENSG00000166526|ENST00000299667|ZNF3;ENST00000487620.1_1_7:99668768-99673049:-|nuORF	nc|ENSG00000166526|P17036-2|ZNF3	nc|ENSG00000166526|P17036-2|ZNF3	MULTI-MSMS	A375_MHC_IP_R1	1	404.95721435546875	3	404.557236	1210.64988	-0.3314	-0.00013407	0.30302	0.00012259	-0.02838	-1.1481E-05	404.5573722100859	62.576	0.51262	62.576	62.3	62.813	0					20	9	3	0	0	0	0.074562	1	22593	22593		55.235	28.011	1	5264600			4583	7085	3047	3091	4479	4479					0.05297997639627283
AVYFIRKEW	9	Unmodified	_AVYFIRKEW_					0	0	0		nc|ENSG00000166526|P17036-2|ZNF3;ENSG00000166526|ENST00000299667|ZNF3;ENST00000487620.1_1_7:99668768-99673049:-|nuORF	nc|ENSG00000166526|P17036-2|ZNF3	nc|ENSG00000166526|P17036-2|ZNF3	MULTI-MSMS	A375_MHC_IP_R2	2	404.9567565917969	3	404.557236	1210.64988	-0.3013	-0.00012189	-0.14679	-5.9386E-05	-0.4481	-0.00018128	404.55711523132913	61.719	0.55399	62.463	62.171	62.725	0.74429					23	10	3	0	0	0	0.074562	1	23392	23392		55.235	23.197	1	5317300			4584	7085	3047	3091	4480	4480					0.05297997639627283
AVYQKPLTLN	10	Unmodified	_AVYQKPLTLN_					0	0	0			REV__nc|ENSG00000129003|Q709C8-4|VPS13C	REV__nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	A375_MHC_IP_R1	1	382.9454040527344	3	382.888763	1145.64446	0.39691	0.00015197	0.13612	5.2119E-05	0.53303	0.00020409	382.88880509352174	50.996	1.0641	50.996	50.663	51.728	0					34	20	2	0	0	0	0.69306	1	18286	18286		8.4443	0	1	1761500	+		4585	18478	3048	3092	4481	4481					0.07746274057171831
AVYSPPHHV	9	Unmodified	_AVYSPPHHV_					0	0	0			REV__nc|ENSG00000106366|P05121-2|SERPINE1	REV__nc|ENSG00000106366|P05121-2|SERPINE1	MSMS	A375_MHC_IP_R1	1	503.6673583984375	2	503.758884	1005.50321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.025	1	48.025	47.525	48.525	0								0	0	0	0.15486	1	16919	16919		12.532	4.6214	1		+		4586	17444	3049	3093	4482	4482					0.0006832047456555301
AVYTSFCCC	9	Unmodified	_AVYTSFCCC_					0	0	0		nc|ENSG00000184949|F5H4B4-2|FAM227A;ENSG00000184949|ENST00000535113|FAM227A	nc|ENSG00000184949|F5H4B4-2|FAM227A	nc|ENSG00000184949|F5H4B4-2|FAM227A	MULTI-MSMS	A375_MHC_IP_R1	1	499.1551513671875	2	498.684824	995.355095	-0.60595	-0.00030218	-0.46558	-0.00023218	-1.0715	-0.00053435	498.6845156391028	90.921	0.55715	90.921	90.742	91.299	0					11	10	2	0	0	0	0.68216	1	33446	33446		8.5933	2.8329	1	775640			4587	8621	3050	3094	4483	4483					-0.14276818157463822
AWARIGLAAF	10	Unmodified	_AWARIGLAAF_					0	0	0			REV__ENST00000315796.4_1_2:172945816-172945978:+|nuORF	REV__ENST00000315796.4_1_2:172945816-172945978:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	359.2498779296875	3	359.206426	1074.59745	-0.49346	-0.00017725	0.76345	0.00027424	0.26999	9.6984E-05	359.20660083609675	57.703	0.4574	58.452	58.272	58.729	0.74894					14	8	2	0	0	0	0.85226	1	21927	21927		8.9762	0	1	750490	+		4588	23536	3051	3095	4484	4484					0.06313459296688961
AWCRQMLRYLK	11	Unmodified	_AWCRQMLRYLK_					0	0	0			REV__nc|ENSG00000112655|Q13308-3|PTK7	REV__nc|ENSG00000112655|Q13308-3|PTK7	MULTI-MSMS	A375_MHC_IP_R2	2	367.9524841308594	4	367.698246	1466.76388	-0.093154	-3.4252E-05	-0.98576	-0.00036246	-1.0789	-0.00039672	367.6978785718134	19.005	0.35003	19.608	19.483	19.833	0.60308					10	6	2	0	0	0	0.73195	1	5652	5652		7.0371	0.41363	1	7907000	+		4589	17744	3052	3096	4485	4485					0.04916821138567684
AWEEEEDAP	9	Unmodified	_AWEEEEDAP_					0	0	0		EBAG9|p.A166P|1|0.22|ENSG00000147654|chr8:109560904-109560904|G/C|missense_variant	EBAG9|p.A166P|1|0.22|ENSG00000147654|chr8:109560904-109560904|G/C|missense_variant	EBAG9|p.A166P|1|0.22|ENSG00000147654|chr8:109560904-109560904|G/C|missense_variant	MSMS	A375_MHC_IP_R1	1	538.20068359375	2	538.214369	1074.41418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.122	1	40.122	39.622	40.622	0								0	0	0	0.15486	1	13766	13766		7.9102	0	1				4590	813	3053	3097	4486	4486					-0.12004604066305546
AWEVTASKYV	10	Unmodified	_AWEVTASKYV_					0	0	0		ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000197136|Q9H6A9-3|PCNX3;ENST00000439247.2_1_11:65394334-65404446:+|nuORF;ENST00000531280.1_1_11:65397907-65401612:+|nuORF	ENSG00000197136|ENST00000355703|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	MULTI-MSMS	A375_MHC_IP_R2	2	385.6007385253906	3	385.201118	1152.58152	-0.75812	-0.00029203	0.20326	7.8294E-05	-0.55487	-0.00021374	385.20109385067013	28.697	0.25029	29.395	29.283	29.534	0.69872					6	4	2	0	0	0	0.70793	1	10004	10004		7.9454	4.3583	1	11820000			4591	9121	3054	3098	4487	4487					0.011337082691397882
AWRYVRQQLQP	11	Unmodified	_AWRYVRQQLQP_					0	0	0		ENST00000578434.1_1_17:26879057-26879575:-|nuORF	ENST00000578434.1_1_17:26879057-26879575:-|nuORF	ENST00000578434.1_1_17:26879057-26879575:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	723.2948608398438	2	722.894035	1443.77352	-0.57136	-0.00041303	1.459	0.0010547	0.8876	0.00064164	722.8947882271715	73.969	0.45627	73.969	73.69	74.146	0					15	8	3	0	0	0	0.86796	1	26974	26974		26.268	14.027	1	2255500			4592	13654	3055	3099	4488	4488					0.06938048739993974
AWSNHRPV	8	Unmodified	_AWSNHRPV_					0	0	0		CSMD3|p.D538N|2|0.4|ENSG00000164796|chr8:112921648-112921648|C/T|missense_variant	CSMD3|p.D538N|2|0.4|ENSG00000164796|chr8:112921648-112921648|C/T|missense_variant	CSMD3|p.D538N|2|0.4|ENSG00000164796|chr8:112921648-112921648|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6468505859375	2	483.74885	965.483148	-0.58548	-0.00028323	-0.26687	-0.0001291	-0.85235	-0.00041232	483.748722681578	45.712	0.5026	46.478	46.201	46.704	0.76519					16	9	2	0	0	0	0.94479	1	17058	17058		8.5933	0	1	9585100			4593	672	3056	3100	4489	4489					-0.0009743046539369971
AWTIIPPPL	9	Unmodified	_AWTIIPPPL_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	A375_MHC_IP_R1	1	504.6993713378906	2	504.299853	1006.58515	-0.72808	-0.00036717	-1.843	-0.00092944	-2.5711	-0.0012966	504.2992790143554	142.09	0.45737	142.09	141.83	142.29	0					12	8	3	0	0	0	0.72507	1	54548	54548		4.756	0.42677	1	1017100	+		4594	19347	3057	3101	4490	4490					0.08212422833662458
AWWKSWIE	8	Unmodified	_AWWKSWIE_					0	0	0		nc|ENSG00000276850|P13928-2|ANXA8;ENSG00000265190|ENST00000585281|ANXA8	nc|ENSG00000276850|P13928-2|ANXA8	nc|ENSG00000276850|P13928-2|ANXA8	MULTI-MSMS	A375_MHC_IP_R1	1	369.4447326660156	3	369.187032	1104.53927	0.16476	6.0829E-05	-0.33257	-0.00012278	-0.16781	-6.1952E-05	369.1867679714491	25.676	0.30556	25.676	25.46	25.765	0					10	5	2	0	0	0	0.77752	1	7458	7458		2.7352	0.99292	1	1019600			4595	9956	3058	3102	4491	4491					-0.008822223485822178
AYAGRESDGYF	11	Unmodified	_AYAGRESDGYF_					0	0	0			REV__tr|U7SMP1|U7SMP1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01766PE=4SV=1	REV__tr|U7SMP1|U7SMP1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01766PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	618.669189453125	2	618.27001	1234.52547	-0.62733	-0.00038786	-0.49787	-0.00030782	-1.1252	-0.00069567	618.2698550230409	23.425	1.2729	23.425	23.074	24.347	0					53	24	3	0	0	0	0.57844	1	6756	6756		24.991	1.2012	1	7660000	+		4596	28307	3059	3103	4492	4492					-0.08241544638326559
AYATSSILGF	10	Unmodified	_AYATSSILGF_					0	0	0			REV__ENSG00000165030|ENST00000297689|NFIL3	REV__ENSG00000165030|ENST00000297689|NFIL3	MSMS	A375_MHC_IP_R1	1	514.9549560546875	2	515.266207	1028.51786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.416	1	64.416	63.916	64.916	0								0	0	0	0.15158	1	23305	23305		14.838	4.0143	1		+		4597	20542	3060	3104	4493	4493					0.004743478320506256
AYCCDKEPL	9	Unmodified	_AYCCDKEPL_					0	0	0			REV__ENST00000602547.1_1_12:6994092-6994545:+|nuORF	REV__ENST00000602547.1_1_12:6994092-6994545:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	521.6229858398438	2	521.222628	1040.4307	-0.53365	-0.00027815	-1.6221	-0.00084547	-2.1557	-0.0011236	521.7228765025138	92.962	0.65955	93.701	93.341	94.001	0.73902					29	12	3	0	0	0	0.4867	1	35333	35333		20.454	8.8133	1	2894200	+		4598	26514	3061	3105	4494	4494					-0.0878951770553158
AYDEKPNYQ	9	Unmodified	_AYDEKPNYQ_					0	0	0		nc|ENSG00000028116|Q86Y07-5|VRK2;nc|ENSG00000028116|Q86Y07-2|VRK2;ENSG00000028116|ENST00000340157|VRK2;nc|ENSG00000028116|Q86Y07-4|VRK2;nc|ENSG00000028116|Q86Y07-3|VRK2	nc|ENSG00000028116|Q86Y07-5|VRK2	nc|ENSG00000028116|Q86Y07-5|VRK2	MULTI-MSMS	A375_MHC_IP_R1	1	564.1852416992188	2	564.253828	1126.4931	-0.42298	-0.00023867	1.0154	0.00057295	0.59243	0.00033428	564.2546245406933	83.428	1.3678	83.428	82.418	83.786	0					56	26	4	0	0	0	0.41409	1	30528	30528		24.021	5.8742	1	4864600			4599	1100	3062	3106	4495	4495					-0.06508332041335052
AYDEKPNYQ	9	Unmodified	_AYDEKPNYQ_					0	0	0		nc|ENSG00000028116|Q86Y07-5|VRK2;nc|ENSG00000028116|Q86Y07-2|VRK2;ENSG00000028116|ENST00000340157|VRK2;nc|ENSG00000028116|Q86Y07-4|VRK2;nc|ENSG00000028116|Q86Y07-3|VRK2	nc|ENSG00000028116|Q86Y07-5|VRK2	nc|ENSG00000028116|Q86Y07-5|VRK2	MULTI-MSMS	A375_MHC_IP_R2	2	564.184814453125	2	564.253828	1126.4931	-0.49138	-0.00027726	0.41566	0.00023454	-0.07572	-4.2725E-05	564.2544092366059	82.836	1.7757	83.578	82.533	84.308	0.74255					64	34	4	0	0	0	0.53367	1	31390	31390		18.146	18.146	1	6246700			4600	1100	3062	3106	4496	4496					-0.06508332041335052
AYDLLGAF	8	Unmodified	_AYDLLGAF_					0	0	0		ENSG00000130775|ENST00000373921|THEMIS2	ENSG00000130775|ENST00000373921|THEMIS2	ENSG00000130775|ENST00000373921|THEMIS2	MSMS	A375_MHC_IP_R2	2	435.6220397949219	2	435.223811	868.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.169	1	92.908	92.408	93.408	0.73902								0	0	0	0.16876	1	35054	35054		14.582	0	1				4601	4281	3063	3107	4497	4497					-0.006409779139062266
AYDLRPSL	8	Unmodified	_AYDLRPSL_					0	0	0		ENSG00000172680|ENST00000311923|MOS	ENSG00000172680|ENST00000311923|MOS	ENSG00000172680|ENST00000311923|MOS	MULTI-SECPEP	A375_MHC_IP_R1	1	468.1530456542969	2	467.753267	933.491981	-0.17891	-8.3688E-05	0.058606	2.7413E-05	-0.12031	-5.6275E-05	467.75316405550643	62.586	0.76841	62.586	62.198	62.966	0					30	14	3	0	0	0	0.59711	1	22582	22582		36.044	1.9418	1	6368300			4602	7729	3064	3108	4498	4498					0.022574983804247495
AYDRYVTIY	9	Unmodified	_AYDRYVTIY_					0	0	0		OR5M11|p.A124T|1|0.5|ENSG00000255223|chr11:56542888-56542888|C/T|missense_variant	OR5M11|p.A124T|1|0.5|ENSG00000255223|chr11:56542888-56542888|C/T|missense_variant	OR5M11|p.A124T|1|0.5|ENSG00000255223|chr11:56542888-56542888|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	582.689453125	2	582.290214	1162.56587	-0.4682	-0.00027263	-0.033281	-1.9379E-05	-0.50148	-0.00029201	582.2900395445994	66.734	0.61127	67.47	67.087	67.698	0.73631					17	11	2	0	0	0	0.58271	1	25333	25333		26.884	6.43	1	2370300			4603	15092	3065	3109	4499	4499					-0.008905782478905166
AYDSNSSYE	9	Unmodified	_AYDSNSSYE_					0	0	0		LILRB1|p.P205S|1|0.71|ENSG00000104972|chr19:54632189-54632189|C/T|missense_variant	LILRB1|p.P205S|1|0.71|ENSG00000104972|chr19:54632189-54632189|C/T|missense_variant	LILRB1|p.P205S|1|0.71|ENSG00000104972|chr19:54632189-54632189|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	518.5982666015625	2	518.198719	1034.38288	-1.2247	-0.00063466	0.51592	0.00026735	-0.70882	-0.00036731	518.1988994607042	33.857	0.45477	34.609	34.348	34.803	0.75225					18	8	3	0	0	0	0.73363	1	12144	12144		3.5965	0	1	3643700			4604	14300	3066	3110	4500	4500					-0.13293177100376852
AYEPPPPP	8	Unmodified	_AYEPPPPP_					0	0	0		ENST00000476870.5_1_7:100465042-100470283:+|nuORF;ENSG00000087077|ENST00000200457|TRIP6	ENST00000476870.5_1_7:100465042-100470283:+|nuORF	ENST00000476870.5_1_7:100465042-100470283:+|nuORF	MSMS	A375_MHC_IP_R2	2	434.158447265625	2	434.215986	866.417419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.568	1	46.333	45.833	46.833	0.76519								0	0	0	0.16876	1	17038	17038		11.114	0	1				4605	1852	3067	3111	4501	4501					-0.021132644309545867
AYESDHALF	9	Unmodified	_AYESDHALF_					0	0	0			REV__FAM120C|p.L257F|1|0.65|ENSG00000184083|chrX:54159547-54159547|G/A|missense_variant	REV__FAM120C|p.L257F|1|0.65|ENSG00000184083|chrX:54159547-54159547|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	526.1257934570312	2	526.737814	1051.46108	-0.68894	-0.00036289	0.44235	0.000233	-0.24659	-0.00012989	526.738145838343	84.631	0.46079	84.631	84.391	84.852	0					12	8	2	0	0	0	0.60012	1	30942	30942		24.674	1.5255	1	1560100	+		4606	26605	3068	3112	4502	4502					-0.06259699724478196
AYESDHALF	9	Unmodified	_AYESDHALF_					0	0	0			REV__FAM120C|p.L257F|1|0.65|ENSG00000184083|chrX:54159547-54159547|G/A|missense_variant	REV__FAM120C|p.L257F|1|0.65|ENSG00000184083|chrX:54159547-54159547|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	526.737814	1051.46108	-0.37881	-0.00019953	-0.15722	-8.2816E-05	-0.53603	-0.00028235	526.7377738401239	84.04	0.66586	84.779	84.407	85.073	0.73962	0.07428	-0.00039263	NaN	24.674	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1162100	+		4607	26605	3068	3112							-0.06259699724478196
AYETESREKF	10	Unmodified	_AYETESREKF_					0	0	0			REV__GCSAML|p.R103K|1|0.28|ENSG00000169224|chr1:247574282-247574282|G/A|missense_variant	REV__GCSAML|p.R103K|1|0.28|ENSG00000169224|chr1:247574282-247574282|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	420.68939208984375	3	420.534937	1258.58298	0.0132	5.5512E-06	-0.22352	-9.3997E-05	-0.21032	-8.8445E-05	420.5347814504119	43.13	0.55743	43.903	43.674	44.231	0.7724					17	10	3	0	0	0	0.92957	1	16028	16028		3.3196	0	1	1979300	+		4608	26677	3069	3113	4503	4503					-0.03596702432787424
AYEVEVHRL	9	Unmodified	_AYEVEVHRL_					0	0	0		ENSG00000085998|ENST00000371984|POMGNT1;nc|ENSG00000085998|Q8WZA1-2|POMGNT1;ENST00000396420.7_1_1:46654944-46659087:-|nuORF	ENSG00000085998|ENST00000371984|POMGNT1	ENSG00000085998|ENST00000371984|POMGNT1	MULTI-SECPEP	A375_MHC_IP_R2	2	373.3049621582031	3	372.532979	1114.57711	0.42287	0.00015753	-0.57524	-0.0002143	-0.15237	-5.6762E-05	372.5326602855495	30.802	0.30194	31.521	31.417	31.719	0.71857					9	5	2	0	0	0	0.75466	1	10866	10866		8.1555	1.0538	1	1357000			4609	1824	3070	3114	4504	4504					0.024402438462402642
AYFAHARKV	9	Unmodified	_AYFAHARKV_					0	0	0		CRNKL1|p.L672*|1|0.43|ENSG00000101343|chr20:20039622-20039622|A/-|frameshift_variant;ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	CRNKL1|p.L672*|1|0.43|ENSG00000101343|chr20:20039622-20039622|A/-|frameshift_variant	CRNKL1|p.L672*|1|0.43|ENSG00000101343|chr20:20039622-20039622|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	354.9694519042969	3	354.866293	1061.57705	-0.18953	-6.7258E-05	-0.19427	-6.8941E-05	-0.3838	-0.0001362	354.8661898084301	19.425	0.38484	19.425	19.238	19.623	0					16	7	3	0	0	0	0.07754	1	4815	4815		49.554	40.171	1	10287000			4610	663	3071	3115	4505	4505					0.048722886368977925
AYFAHARKV	9	Unmodified	_AYFAHARKV_					0	0	0		CRNKL1|p.L672*|1|0.43|ENSG00000101343|chr20:20039622-20039622|A/-|frameshift_variant;ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	CRNKL1|p.L672*|1|0.43|ENSG00000101343|chr20:20039622-20039622|A/-|frameshift_variant	CRNKL1|p.L672*|1|0.43|ENSG00000101343|chr20:20039622-20039622|A/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	354.866293	1061.57705	-0.4842	-0.00017183	-0.61517	-0.0002183	-1.0994	-0.00039013	354.8660871014162	18.873	0.09527	19.476	19.438	19.533	0.60308	0.025786	-0.0001866	NaN	49.554	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11596000			4611	663	3071	3115							0.048722886368977925
AYFRDRHHVTV	11	Unmodified	_AYFRDRHHVTV_					0	0	0		ENST00000550216.1_1_12:70636609-70636892:-|nuORF	ENST00000550216.1_1_12:70636609-70636892:-|nuORF	ENST00000550216.1_1_12:70636609-70636892:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	467.9770812988281	3	467.577582	1399.71092	-0.65133	-0.00030455	-0.37004	-0.00017302	-1.0214	-0.00047757	467.57738542543217	67.709	0.40491	67.709	67.449	67.854	0					14	7	2	0	0	0	0.72585	1	24535	24535		12.856	6.2325	1	2640700			4612	13365	3072	3116	4506	4506					0.027049026717577362
AYGHEVGKRP	10	Unmodified	_AYGHEVGKRP_					0	0	0		ENSG00000115919|ENST00000264170|KYNU;ENST00000460143.1_1_2:143676251-143715440:+|nuORF;nc|ENSG00000115919|Q16719-2|KYNU;ENST00000424385.5_1_2:143643067-143712385:+|nuORF	ENSG00000115919|ENST00000264170|KYNU	ENSG00000115919|ENST00000264170|KYNU	MULTI-SECPEP	A375_MHC_IP_R1	1	372.30224609375	3	371.86484	1112.57269	0.25405	9.4473E-05	0.93502	0.0003477	1.1891	0.00044217	371.86529318131653	25.434	0.71178	25.434	25.255	25.966	0					22	13	2	0	0	0	0.93615	1	7346	7346		1.9064	0	1	4735600			4613	3350	3073	3117	4507	4507					0.020907794233380628
AYGHIGLKYK	10	Unmodified	_AYGHIGLKYK_					0	0	0			REV__nc|ENSG00000157445|Q8IZS8-3|CACNA2D3	REV__nc|ENSG00000157445|Q8IZS8-3|CACNA2D3	MSMS	A375_MHC_IP_R1	1	383.9190368652344	3	383.885353	1148.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.265	1	38.265	37.765	38.765	0								0	0	0	0.14568	1	12965	12965		26.021	15.705	1		+		4614	20031	3074	3118	4508	4508					0.06585711122602333
AYGHIGLKYK	10	Unmodified	_AYGHIGLKYK_					0	0	0			REV__nc|ENSG00000157445|Q8IZS8-3|CACNA2D3	REV__nc|ENSG00000157445|Q8IZS8-3|CACNA2D3	MSMS	A375_MHC_IP_R2	2	383.9189453125	3	383.885353	1148.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.398	1	38.168	37.668	38.668	0.7709								0	0	0	0.14855	1	13679	13679		20.581	13.544	1		+		4615	20031	3074	3118	4509	4509					0.06585711122602333
AYGLLCHCEY	10	Unmodified	_AYGLLCHCEY_					0	0	0			REV__CRB2|p.P135L|1|0.2|ENSG00000148204|chr9:123363174-123363174|C/T|missense_variant	REV__CRB2|p.P135L|1|0.2|ENSG00000148204|chr9:123363174-123363174|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	586.1931762695312	2	586.249177	1170.4838	-0.2513	-0.00014733	-0.9151	-0.00053648	-1.1664	-0.0006838	586.7500691020706	63.76	0.91606	63.76	63.477	64.393	0					24	17	2	0	0	0	0.70146	1	23166	23166		11.64	11.64	1	3220900	+		4616	15915	3075	3119	4510	4510					-0.09462139922857205
AYGLSREV	8	Unmodified	_AYGLSREV_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159889062-159890299:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-SECPEP	A375_MHC_IP_R1	1	448.1374206542969	2	447.737617	893.460681	-0.31275	-0.00014003	0.058959	2.6398E-05	-0.25379	-0.00011363	447.7376106184329	36.42	0.71184	36.42	36.133	36.845	0					36	13	4	0	0	0	0.33704	1	12166	12166		66.457	32.055	1	52141000			4617	6324	3076	3120	4511	4511					0.009689253463420755
AYGLSREV	8	Unmodified	_AYGLSREV_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159889062-159890299:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MSMS	A375_MHC_IP_R2	2	447.7465515136719	2	447.737617	893.460681	-0.53566	-0.00023984	0.13773	6.1667E-05	-0.39793	-0.00017817	447.73765331013857	35.595	0.81347	36.358	36.132	36.946	0.76338					38	15	4	0	0	0	0.31391	1	12896	12896		57.722	15.882	1	77488000			4618	6324	3076	3120	4512	4512					0.009689253463420755
AYHIYHEEF	9	Unmodified	_AYHIYHEEF_					0	0	0		nc|ENSG00000169402|B2RC85-2|RSPH10B2;ENSG00000169402|ENST00000404077|RSPH10B2;ENSG00000155026|ENST00000404406|RSPH10B	nc|ENSG00000169402|B2RC85-2|RSPH10B2	nc|ENSG00000169402|B2RC85-2|RSPH10B2	MULTI-MSMS	A375_MHC_IP_R1	1	604.717041015625	2	604.772188	1207.52982	-0.2496	-0.00015095	-0.21118	-0.00012772	-0.46079	-0.00027867	604.772092187018	78.08	1.4205	78.08	77.286	78.707	0					44	27	2	0	0	0	0.62719	1	28370	28370		13.508	4.1248	1	1758600			4619	6119	3077	3121	4513	4513					-0.06564035424776193
AYHIYHEEF	9	Unmodified	_AYHIYHEEF_					0	0	0		nc|ENSG00000169402|B2RC85-2|RSPH10B2;ENSG00000169402|ENST00000404077|RSPH10B2;ENSG00000155026|ENST00000404406|RSPH10B	nc|ENSG00000169402|B2RC85-2|RSPH10B2	nc|ENSG00000169402|B2RC85-2|RSPH10B2	MULTI-MSMS	A375_MHC_IP_R2	2	605.1878662109375	2	604.772188	1207.52982	-0.43746	-0.00026457	-1.1498	-0.00069535	-1.5872	-0.00095992	605.7730557279982	77.473	1.6273	78.216	77.404	79.031	0.74293					66	31	3	0	0	0	0.62719	1	29283	29283		13.508	1.2672	1	2883200			4620	6119	3077	3121	4514	4514					-0.06564035424776193
AYHIYHEEF	9	Unmodified	_AYHIYHEEF_					0	0	0		nc|ENSG00000169402|B2RC85-2|RSPH10B2;ENSG00000169402|ENST00000404077|RSPH10B2;ENSG00000155026|ENST00000404406|RSPH10B	nc|ENSG00000169402|B2RC85-2|RSPH10B2	nc|ENSG00000169402|B2RC85-2|RSPH10B2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	604.772188	1207.52982	-0.2496	-0.00015095	-0.21118	-0.00012772	-0.46079	-0.00027867	604.772092187018	78.08	1.4205	78.08	77.286	78.707	0	-0.067775	0.00049518	NaN	13.508	44	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1758600			4621	6119	3077	3121							-0.06564035424776193
AYHIYHEEF	9	Unmodified	_AYHIYHEEF_					0	0	0		nc|ENSG00000169402|B2RC85-2|RSPH10B2;ENSG00000169402|ENST00000404077|RSPH10B2;ENSG00000155026|ENST00000404406|RSPH10B	nc|ENSG00000169402|B2RC85-2|RSPH10B2	nc|ENSG00000169402|B2RC85-2|RSPH10B2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	604.772188	1207.52982	-0.43746	-0.00026457	-1.1498	-0.00069535	-1.5872	-0.00095992	605.7730557279982	77.473	1.6273	78.216	77.404	79.031	0.74293	0.067775	-0.00064009	NaN	13.508	66	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2883200			4622	6119	3077	3121							-0.06564035424776193
AYICVCFFNAY	11	Unmodified	_AYICVCFFNAY_					0	0	0			REV__ENST00000426194.1_1_18:30353372-30353567:+|nuORF	REV__ENST00000426194.1_1_18:30353372-30353567:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	656.6041870117188	2	657.288302	1312.56205	-0.26914	-0.00017691	-2.8857	-0.0018967	-3.1549	-0.0020736	657.7883926230317	93.048	0.15184	93.048	92.922	93.074	0					4	2	2	0	0	0	0.99109	1	34202	34202		3.2813	0	1	1730000	+		4623	24647	3078	3122	4515	4515					-0.08172707337598695
AYIHRYYLEKY	11	Unmodified	_AYIHRYYLEKY_					0	0	0			REV__ENSG00000100129|ENST00000652021|EIF3L	REV__ENSG00000100129|ENST00000652021|EIF3L	MSMS	A375_MHC_IP_R2	2	506.9273986816406	3	506.92951	1517.7667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.133	1	33.885	33.385	34.385	0.75225								0	0	0	0.16332	1	11845	11845		1.4551	0.24029	1		+		4624	17052	3079	3123	4516	4516					0.02852691068733293
AYKGLQPIY	9	Unmodified	_AYKGLQPIY_					0	0	0			REV__ENSG00000173064|ENST00000682272|HECTD4	REV__ENSG00000173064|ENST00000682272|HECTD4	MULTI-SECPEP	A375_MHC_IP_R1	1	527.1921997070312	2	526.792392	1051.57023	-0.5683	-0.00029937	-0.18518	-9.7554E-05	-0.75348	-0.00039693	526.7919467847688	24.564	1.1126	24.564	24.347	25.46	0					38	21	4	0	0	0	0.69504	1	6971	6971		18.135	1.1927	1	13658000	+		4625	21191	3080	3124	4517	4517					0.046509309656585174
AYKKREMVV	9	Unmodified	_AYKKREMVV_					0	0	0		nc|ENSG00000115750|Q53T94-3|TAF1B;ENSG00000115750|ENST00000263663|TAF1B;nc|ENSG00000115750|Q53T94-2|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	MULTI-SECPEP	A375_MHC_IP_R1	1	375.61456298828125	3	375.214593	1122.62195	0.63921	0.00023984	-0.48575	-0.00018226	0.15346	5.758E-05	375.21434439753926	21.886	0.35686	21.886	21.656	22.013	0					10	6	2	0	0	0	0.53748	1	5829	5829		17.443	0	1	1870200			4626	3334	3081	3125	4518	4518					0.06554351387921997
AYLFSSRMY	9	Unmodified	_AYLFSSRMY_					0	0	0			REV__ENST00000424834.6_1_13:24878485-24878731:+|nuORF	REV__ENST00000424834.6_1_13:24878485-24878731:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	569.6732177734375	2	569.273509	1136.53247	-0.28581	-0.00016271	-0.20542	-0.00011694	-0.49123	-0.00027965	569.2731389421552	100.77	0.55743	100.77	100.53	101.09	0					19	10	3	0	0	0	0.3243	1	37058	37058		44.407	4.4573	1	2409300	+		4627	24631	3082	3126	4519	4519					-0.030339032914525887
AYLFSSRMY	9	Unmodified	_AYLFSSRMY_					0	0	0			REV__ENST00000424834.6_1_13:24878485-24878731:+|nuORF	REV__ENST00000424834.6_1_13:24878485-24878731:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	569.6732788085938	2	569.273509	1136.53247	-0.083807	-4.7709E-05	0.15587	8.8733E-05	0.072063	4.1024E-05	569.2734188675597	99.808	0.55658	100.57	100.32	100.88	0.76278					16	10	2	0	0	0	0.43707	1	37866	37866		36.044	0	1	2582200	+		4628	24631	3082	3126	4520	4520					-0.030339032914525887
AYLKDTTFSL	10	Unmodified	_AYLKDTTFSL_					0	0	0			REV__ENSG00000087128|ENST00000305363|TMPRSS11E	REV__ENSG00000087128|ENST00000305363|TMPRSS11E	MULTI-SECPEP	A375_MHC_IP_R1	1	579.1798095703125	2	579.805697	1157.59684	-0.15451	-8.9585E-05	1.2428	0.0007206	1.0883	0.00063101	579.8063995171369	102.63	0.65869	102.63	102.35	103.01	0					21	12	2	0	0	0	0.92351	1	37733	37733		10.824	10.824	1	2202900	+		4629	16865	3083	3127	4521	4521					0.02434575066308753
AYLNWIYN	8	Unmodified	_AYLNWIYN_					0	0	0		nc|ENSG00000137648|Q9NRS4-2|TMPRSS4;nc|ENSG00000137648|Q9NRS4-3|TMPRSS4;ENSG00000137648|ENST00000437212|TMPRSS4;nc|ENSG00000137648|Q9NRS4-4|TMPRSS4	nc|ENSG00000137648|Q9NRS4-2|TMPRSS4	nc|ENSG00000137648|Q9NRS4-2|TMPRSS4	MULTI-SECPEP	A375_MHC_IP_R1	1	528.725830078125	2	528.761092	1055.50763	-0.78023	-0.00041256	-0.64261	-0.00033979	-1.4228	-0.00075234	528.7607675112549	23.965	0.50762	23.965	23.737	24.245	0					15	9	2	0	0	0	0.91495	1	6838	6838		12.532	10.687	1	2774200			4630	4902	3084	3128	4522	4522					-0.017902151025282365
AYLRRRRRRRV	11	Unmodified	_AYLRRRRRRRV_					0	0	0			REV__ENST00000554273.1_1_14:50998823-50999316:-|nuORF	REV__ENST00000554273.1_1_14:50998823-50999316:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	519.9854736328125	3	519.997697	1556.97126	-0.63534	-0.00033037	0.8692	0.00045198	0.23386	0.0001216	520.3330050865756	108.39	0.25449	109.15	109.07	109.32	0.75436					6	4	2	0	0	0	0.73924	1	40992	40992		0.094841	0.094841	1	637050	+		4631	26077	3085	3129	4523	4523					0.21505532513128855
AYLRRRRRRRV	11	Unmodified	_AYLRRRRRRRV_					0	0	0			REV__ENST00000554273.1_1_14:50998823-50999316:-|nuORF	REV__ENST00000554273.1_1_14:50998823-50999316:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	520.6553344726562	3	519.997697	1556.97126	-0.63534	-0.00033037	0.8692	0.00045198	0.23386	0.0001216	520.3330050865756	108.39	0.25449	109.15	109.07	109.32	0.75436					6	4	2	0	0	0	1.0015	1	40969	40969		0	0	1	637050	+		4632	26077	3085	3129	4524	4524					0.21505532513128855
AYLRVLRK	8	Unmodified	_AYLRVLRK_					0	0	0			REV__BLK|p.E294K|1|0.25|ENSG00000136573|chr8:11556765-11556765|G/A|missense_variant	REV__BLK|p.E294K|1|0.25|ENSG00000136573|chr8:11556765-11556765|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	510.22930908203125	2	509.829643	1017.64473	-0.72194	-0.00036807	-0.86979	-0.00044345	-1.5917	-0.00081151	509.8295578227559	48.374	0.70747	49.131	48.829	49.536	0.75737					23	13	2	0	0	0	0.972	1	18159	18159		9.3474	4.5914	1	3814000	+		4633	15512	3086	3130	4525	4525					0.13661738567691373
AYLVGERSI	9	Unmodified	_AYLVGERSI_					0	0	0			REV__IGHMBP2|p.G953S|1|0.36|ENSG00000132740|chr11:68939606-68939606|G/A|missense_variant	REV__IGHMBP2|p.G953S|1|0.36|ENSG00000132740|chr11:68939606-68939606|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	504.1995849609375	2	504.279649	1006.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.694	1	71.694	71.194	72.194	0								0	0	0	0.1521	1	26061	26061		18.135	4.6271	1		+		4634	18675	3087	3131	4526	4526					0.04173456443231771
AYLYWRSLA	9	Unmodified	_AYLYWRSLA_					0	0	0			REV__ENSG00000198133|ENST00000554480|TMEM229B	REV__ENSG00000198133|ENST00000554480|TMEM229B	MSMS	A375_MHC_IP_R2	2	381.595947265625	3	381.537953	1141.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.605	1	44.376	43.876	44.876	0.77114								0	0	0	0.15386	1	16250	16250		15.248	9.8458	1		+		4635	22345	3088	3132	4527	4527					0.026897357142161127
AYNVDFKSN	9	Unmodified	_AYNVDFKSN_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-4|HACE1	REV__nc|ENSG00000085382|Q8IYU2-4|HACE1	MULTI-SECPEP	A375_MHC_IP_R1	1	528.6609497070312	2	529.251089	1056.48762	-0.3502	-0.00018534	-0.25202	-0.00013338	-0.60222	-0.00031873	529.2513152491267	106.76	0.91909	106.76	106.37	107.29	0					23	17	2	0	0	0	0.67483	1	39319	39319		20.454	3.5113	1	3992100	+		4636	16834	3089	3133	4528	4528					-0.038360108331289666
AYPFFDDH	8	Unmodified	_AYPFFDDH_					0	0	0			REV__ENSG00000104774|ENST00000456935|MAN2B1	REV__ENSG00000104774|ENST00000456935|MAN2B1	MULTI-SECPEP	A375_MHC_IP_R2	2	1010.737060546875	1	1011.42067	1010.4134	0.035846	3.6255E-05	-0.006893	-6.9717E-06	0.028953	2.9284E-05	1012.4238216229161	123.78	0.15227	124.11	124.04	124.19	0.32969					4	2	2	0	0	0	0.972	1	47657	47657		0	0	1	9950200	+		4637	17337	3090	3134	4529	4529					-0.09139353924661009
AYQRSSYY	8	Unmodified	_AYQRSSYY_					0	0	0			REV__ENSG00000196659|ENST00000408939|TTC30B	REV__ENSG00000196659|ENST00000408939|TTC30B	MULTI-MSMS	A375_MHC_IP_R1	1	519.63671875	2	519.237981	1036.46141	-0.98746	-0.00051273	-1.2278	-0.00063755	-2.2153	-0.0011503	519.2373741102009	29.363	0.40593	29.363	29.047	29.453	0					11	7	2	0	0	0	0.70783	1	9168	9168		32.305	7.6316	1	10751000	+		4638	22218	3091	3135	4530	4530					-0.05536280004616856
AYQRSSYY	8	Unmodified	_AYQRSSYY_					0	0	0			REV__ENSG00000196659|ENST00000408939|TTC30B	REV__ENSG00000196659|ENST00000408939|TTC30B	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	519.237981	1036.46141	-0.98746	-0.00051273	-1.2278	-0.00063755	-2.2153	-0.0011503	519.2373741102009	29.363	0.40593	29.363	29.047	29.453	0	0.035887	0.00033212	NaN	32.305	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10751000	+		4639	22218	3091	3135							-0.05536280004616856
AYQTRWEFLYS	11	Unmodified	_AYQTRWEFLYS_					0	0	0			REV__ENSG00000197081|ENST00000356956|IGF2R	REV__ENSG00000197081|ENST00000356956|IGF2R	MSMS	A375_MHC_IP_R1	1	488.6667785644531	3	488.569981	1462.68811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.361	1	51.361	50.861	51.861	0								0	0	0	0.16313	1	18230	18230		2.4348	0.97967	1		+		4640	22252	3092	3136	4531	4531					-0.024721612363237
AYRKNVLAK	9	Unmodified	_AYRKNVLAK_					0	0	0		ENSG00000151806|ENST00000281543|GUF1;ENST00000506793.5_1_4:44680541-44700695:+|nuORF	ENSG00000151806|ENST00000281543|GUF1	ENSG00000151806|ENST00000281543|GUF1	MULTI-MSMS	A375_MHC_IP_R1	1	355.2851867675781	3	354.885464	1061.63456	-0.35219	-0.00012499	-1.8669	-0.00066254	-2.2191	-0.00078753	354.8852147227783	26.301	0.50661	26.301	26.221	26.728	0					12	9	3	0	0	0	0.68705	1	7859	7859		8.1555	0	1	2346300			4641	5929	3093	3137	4532	4532					0.10621130842446291
AYSCQCCQ	8	Unmodified	_AYSCQCCQ_					0	0	0			REV__nc|ENSG00000124092|Q8NI51-11|CTCFL	REV__nc|ENSG00000124092|Q8NI51-11|CTCFL	MULTI-SECPEP	A375_MHC_IP_R1	1	905.5451049804688	1	905.29502	904.287744	0.016426	1.487E-05	1.5679	0.0014194	1.5843	0.0014342	905.296802395758	117.69	0.81143	117.69	117.21	118.02	0					21	15	2	0	0	0	0.972	1	43102	43102		0.79363	0.10326	1	22505000	+		4642	18269	3094	3138	4533	4533					-0.16822848368417453
AYSDPQLWR	9	Unmodified	_AYSDPQLWR_					0	0	0			REV__ENSG00000005810|ENST00000544440|MYCBP2	REV__ENSG00000005810|ENST00000544440|MYCBP2	MULTI-SECPEP	A375_MHC_IP_R1	1	378.6488037109375	3	379.189212	1134.54581	0.34998	0.00013271	0.76262	0.00028918	1.1126	0.00042189	379.1894852417692	60.141	0.35632	60.141	59.955	60.312	0					9	6	2	0	0	0	0.75466	1	21696	21696		4.897	0	1	658650	+		4643	16125	3095	3139	4534	4534					-0.0160832918786582
AYSIPKHSL	9	Unmodified	_AYSIPKHSL_					0	0	0			REV__tr|U7T8Q4|U7T8Q4_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00130PE=3SV=1	REV__tr|U7T8Q4|U7T8Q4_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00130PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	508.2313537597656	2	508.282192	1014.54983	-0.41099	-0.0002089	-0.93141	-0.00047342	-1.3424	-0.00068232	508.2819248074228	74.091	0.75965	74.091	73.64	74.4	0					23	14	2	0	0	0	0.65246	1	26925	26925		10.824	0	1	6264800	+		4644	28890	3096	3140	4535	4535					0.04313760305853975
AYSLAKMFR	9	Unmodified	_AYSLAKMFR_					0	0	0			REV__ENSG00000164327|ENST00000357387|RICTOR	REV__ENSG00000164327|ENST00000357387|RICTOR	MULTI-SECPEP	A375_MHC_IP_R2	2	362.9647521972656	3	362.863672	1085.56919	-0.41546	-0.00015076	1.468	0.00053268	1.0525	0.00038192	362.86436381493456	23.324	0.30159	23.954	23.828	24.129	0.63014					9	5	3	0	0	0	0.76187	1	7486	7486		2.2828	0	1	1528900	+		4645	20484	3097	3141	4536	4536					0.029823933251009294
AYSNRETIY	9	Unmodified	_AYSNRETIY_					0	0	0		ENSG00000124469|ENST00000244336|CEACAM8	ENSG00000124469|ENST00000244336|CEACAM8	ENSG00000124469|ENST00000244336|CEACAM8	MULTI-MSMS	A375_MHC_IP_R2	2	558.6790161132812	2	558.769645	1115.52474	-0.61997	-0.00034642	0.21583	0.0001206	-0.40413	-0.00022582	558.7697098327967	68.272	2.9442	69.008	67.799	70.744	0.73511					77	57	2	0	0	0	0.62719	1	26403	26403		13.508	1.8676	1	2152100			4646	3903	3098	3142	4537	4537					-0.028403392873769917
AYTDALINY	9	Unmodified	_AYTDALINY_					0	0	0			REV__nc|ENSG00000174840|Q6L8Q7-2|PDE12	REV__nc|ENSG00000174840|Q6L8Q7-2|PDE12	MSMS	A375_MHC_IP_R1	1	522.4348754882812	2	522.25584	1042.49713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.312	1	79.312	78.812	79.812	0								0	0	0	0.15486	1	28950	28950		4.756	0	1		+		4647	21308	3099	3143	4538	4538					-0.022422425476406715
AYTIVPLF	8	Unmodified	_AYTIVPLF_					0	0	0			REV__nc|ENSG00000133059|Q6XUX3-2|DSTYK	REV__nc|ENSG00000133059|Q6XUX3-2|DSTYK	MULTI-MSMS	A375_MHC_IP_R1	1	924.7849731445312	1	923.523682	922.516405	-0.33952	-0.00031356	0.21957	0.00020278	-0.11995	-0.00011078	923.5237523108958	133.84	0.20119	133.84	133.71	133.91	0					5	3	2	0	0	0	0.70179	1	51589	51589		34.187	0	1	10205000	+		4648	18702	3100	3144	4539	4539					0.05204758533943732
AYTIVPLF	8	Unmodified	_AYTIVPLF_					0	0	0			REV__nc|ENSG00000133059|Q6XUX3-2|DSTYK	REV__nc|ENSG00000133059|Q6XUX3-2|DSTYK	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	923.523682	922.516405	-0.33952	-0.00031356	0.21957	0.00020278	-0.11995	-0.00011078	923.5237523108958	133.84	0.20119	133.84	133.71	133.91	0	0.0040281	0.00019912	NaN	34.187	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10205000	+		4649	18702	3100	3144							0.05204758533943732
AYTIVPLF	8	Unmodified	_AYTIVPLF_					0	0	0			REV__nc|ENSG00000133059|Q6XUX3-2|DSTYK	REV__nc|ENSG00000133059|Q6XUX3-2|DSTYK	MULTI-MATCH	A375_MHC_IP_R2	2		1	923.523682	922.516405	-0.22386	-0.00020674	-0.40633	-0.00037525	-0.63019	-0.000582	923.5235107843765	133.66	0.35675	133.83	133.65	134.01	0.16487	-0.0040281	-0.00037891	NaN	34.187	9	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9448900	+		4650	18702	3100	3144							0.05204758533943732
AYVALFLW	8	Unmodified	_AYVALFLW_					0	0	0			REV__nc|ENSG00000107331|Q9BZC7|ABCA2	REV__nc|ENSG00000107331|Q9BZC7|ABCA2	MULTI-SECPEP	A375_MHC_IP_R1	1	491.4627990722656	2	491.773471	981.53239	-0.5647	-0.0002777	-3.0421	-0.001496	-3.6068	-0.0017737	491.771753882771	32.696	0.35209	32.696	32.535	32.887	0					11	6	2	0	0	0	0.972	1	10599	10599		11.114	1.767	1	1532600	+		4651	17482	3101	3145	4540	4540					0.04088464770848077
AYVATGPAPL	10	Unmodified	_AYVATGPAPL_					0	0	0			REV__ENST00000461979.1_1_7:150775105-150777853:-|nuORF	REV__ENST00000461979.1_1_7:150775105-150777853:-|nuORF	MSMS	A375_MHC_IP_R2	2	480.1451110839844	2	480.263468	958.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.479	1	55.23	54.73	55.73	0.75075								0	0	0	0.14601	1	20558	20558		25.399	1.3787	1		+		4652	24982	3102	3146	4541	4541					0.031466690402339736
AYVDDKGIVY	10	Unmodified	_AYVDDKGIVY_					0	0	0		tr|U7T101|U7T101_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00756PE=4SV=1	tr|U7T101|U7T101_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00756PE=4SV=1	tr|U7T101|U7T101_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00756PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	571.2059936523438	2	571.790047	1141.56554	-0.23896	-0.00013664	1.3425	0.00076765	1.1036	0.00063102	571.7910665028788	70.474	1.1167	71.208	70.488	71.605	0.73421					29	21	2	0	0	0	0.70528	1	26471	26471		26.268	14.628	1	7502500			4653	29896	3103	3147	4542	4542					0.0004200203222808341
AYYDTERIG	9	Unmodified	_AYYDTERIG_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F;ENST00000530219.1_1_11:8014470-8016722:+|nuORF	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-SECPEP	A375_MHC_IP_R2	2	543.7444458007812	2	544.256371	1086.49819	-1.092	-0.00059433	-0.15933	-8.6717E-05	-1.2513	-0.00068105	544.2562239451366	23.627	0.25399	24.257	24.079	24.333	0.63014					6	4	2	0	0	0	0.77244	1	7549	7549		9.3474	0	1	3313600			4654	7956	3104	3148	4543	4543					-0.04160028178716857
AYYFNKYEDMW	11	Unmodified	_AYYFNKYEDMW_					0	0	0			REV__ENSG00000143641|ENST00000366672|GALNT2	REV__ENSG00000143641|ENST00000366672|GALNT2	MSMS	A375_MHC_IP_R1	1	510.6356506347656	3	510.551711	1528.6333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.1	1	57.1	56.6	57.6	0								0	0	0	0.1629	1	20473	20473		1.4551	0	1		+		4655	19377	3105	3149	4544	4544					-0.10986916099273003
AYYFNKYEDMW	11	Unmodified	_AYYFNKYEDMW_					0	0	0			REV__ENSG00000143641|ENST00000366672|GALNT2	REV__ENSG00000143641|ENST00000366672|GALNT2	MSMS	A375_MHC_IP_R1	1	510.4513854980469	3	510.551711	1528.6333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.403	1	57.403	56.903	57.903	0								0	0	0	0.16331	1	20590	20590		0.50596	0	1		+		4656	19377	3105	3149	4545	4545					-0.10986916099273003
AYYFNKYEDMW	11	Unmodified	_AYYFNKYEDMW_					0	0	0			REV__ENSG00000143641|ENST00000366672|GALNT2	REV__ENSG00000143641|ENST00000366672|GALNT2	MSMS	A375_MHC_IP_R2	2	510.4508972167969	3	510.551711	1528.6333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.291	1	50.048	49.548	50.548	0.75737								0	0	0	0.16331	1	18521	18521		0.50596	0	1		+		4657	19377	3105	3149	4546	4546					-0.10986916099273003
AYYFNKYEDMW	11	Unmodified	_AYYFNKYEDMW_					0	0	0			REV__ENSG00000143641|ENST00000366672|GALNT2	REV__ENSG00000143641|ENST00000366672|GALNT2	MSMS	A375_MHC_IP_R2	2	510.4516906738281	3	510.551711	1528.6333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.466	1	52.218	51.718	52.718	0.75225								0	0	0	0.16331	1	19367	19367		0.50596	0	1		+		4658	19377	3105	3149	4547	4547					-0.10986916099273003
AYYYQKYEDMW	11	Unmodified	_AYYYQKYEDMW_					0	0	0			REV__nc|ENSG00000158089|Q96FL9-3|GALNT14	REV__nc|ENSG00000158089|Q96FL9-3|GALNT14	MSMS	A375_MHC_IP_R2	2	520.6396484375	3	520.555232	1558.64387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.835	1	78.578	78.078	79.078	0.74293								0	0	0	0.16332	1	29556	29556		1.4551	0.94916	1		+		4659	27310	3106	3150	4548	4548					-0.11310933444838156
CAAGCCCF	8	Unmodified	_CAAGCCCF_					0	0	0		ENST00000468067.5_1_13:99853753-99890777:+|nuORF	ENST00000468067.5_1_13:99853753-99890777:+|nuORF	ENST00000468067.5_1_13:99853753-99890777:+|nuORF	MSMS	A375_MHC_IP_R2	2	389.2718200683594	2	389.11298	776.211408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.842	1	48.603	48.103	49.103	0.76128								0	0	0	0.16876	1	17951	17951		0.79363	0.79363	1				4660	12293	3107	3151	4549	4549					-0.18564943469391437
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MSMS	A375_MHC_IP_R2	2	833.5604858398438	1	832.239102	831.231826	-0.57167	-0.00047576	1.0745	0.00089425	0.50285	0.00041849	832.2409430980979	141.19	1.0796	141.23	140.81	141.89	0.04216					36	20	2	0	0	0	0.77861	1	55283	55283		0	0	1	444910	+		4661	17121	3108	3152	4550	4550					-0.19054096081242733
CAEIYPDIT	9	Unmodified	_CAEIYPDIT_					0	0	0		nc|ENSG00000101204|P43681-2|CHRNA4;ENSG00000101204|ENST00000370263|CHRNA4	nc|ENSG00000101204|P43681-2|CHRNA4	nc|ENSG00000101204|P43681-2|CHRNA4	MULTI-SECPEP	A375_MHC_IP_R1	1	512.1580200195312	2	512.736425	1023.4583	-0.28337	-0.00014529	-2.7751	-0.0014229	-3.0585	-0.0015682	513.2378768275355	45.641	0.91104	45.641	45.334	46.245	0					25	17	3	0	0	0	0.65246	1	15974	15974		10.824	0	1	2299600			4662	14513	3109	3153	4551	4551					-0.052492911736635506
CAHLLSDFYE	10	Unmodified	_CAHLLSDFYE_					0	0	0			REV__nc|ENSG00000048462|Q02223-2|TNFRSF17	REV__nc|ENSG00000048462|Q02223-2|TNFRSF17	MSMS	A375_MHC_IP_R2	2	599.2528686523438	2	599.265881	1196.51721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.26	1	145.28	144.78	145.78	0.021408								0	0	0	0.15591	1	56718	56718		1.6526	0.32309	1		+		4663	16370	3110	3154	4552	4552					-0.0731881487931787
CAHRWSHEY	9	Unmodified	_CAHRWSHEY_					0	0	0		ENST00000579593.1_1_17:26723134-26723302:+|nuORF	ENST00000579593.1_1_17:26723134-26723302:+|nuORF	ENST00000579593.1_1_17:26723134-26723302:+|nuORF	MSMS	A375_MHC_IP_R2	2	594.6516723632812	2	594.753807	1187.49306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.798	1	23.428	22.928	23.928	0.63014								0	0	0	0.15486	1	7263	7263		7.9102	1.187	1				4664	13663	3111	3155	4553	4553					-0.09318610522336712
CALNRPAF	8	Unmodified	_CALNRPAF_					0	0	0		ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	MULTI-SECPEP	A375_MHC_IP_R1	1	445.6422424316406	2	446.228905	890.443257	0.065993	2.9448E-05	-0.3723	-0.00016613	-0.3063	-0.00013668	446.22882444473277	42.445	0.60686	42.445	42.183	42.79	0					16	11	3	0	0	0	0.972	1	14720	14720		5.2307	0	1	1951200			4665	4974	3112	3156	4554	4554					-0.006346934603243426
CAPLPIRLS	9	Unmodified	_CAPLPIRLS_					0	0	0			REV__ENST00000471434.1_1_17:73897061-73897597:-|nuORF	REV__ENST00000471434.1_1_17:73897061-73897597:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	485.16314697265625	2	485.281137	968.547722	-0.30225	-0.00014667	-0.32722	-0.00015879	-0.62947	-0.00030547	485.28108825507746	52.433	0.25428	52.433	52.287	52.541	0					6	4	2	0	0	0	0.4261	1	18620	18620		37.974	3.8716	1	683080	+		4666	25120	3113	3157	4555	4555					0.0621900829637525
CAQCDREFY	9	Unmodified	_CAQCDREFY_					0	0	0			REV__STAB2|p.G1956E|2|0.54|ENSG00000136011|chr12:103740742-103740742|G/A|missense_variant	REV__STAB2|p.G1956E|2|0.54|ENSG00000136011|chr12:103740742-103740742|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	568.121337890625	2	567.720784	1133.42701	-0.36751	-0.00020864	0.48686	0.0002764	0.11935	6.7757E-05	567.7209958357241	62.831	0.91011	63.574	63.13	64.04	0.74263					33	17	3	0	0	0	0.69674	1	23771	23771		7.2892	1.5288	1	3088900	+		4667	28054	3114	3158	4556	4556					-0.13436187479396722
CAQNCGPQL	9	Unmodified	_CAQNCGPQL_					0	0	0			REV__GJD2|p.G132Afs*13|1|0.23|ENSG00000159248|chr15:34753031-34753049|CCCCCACCACTGCCCCCAC/-|frameshift_variant	REV__GJD2|p.G132Afs*13|1|0.23|ENSG00000159248|chr15:34753031-34753049|CCCCCACCACTGCCCCCAC/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	467.59942626953125	2	467.199487	932.384421	-0.49766	-0.00023251	-0.40903	-0.0001911	-0.9067	-0.00042361	467.1994428813392	32.805	1.6168	32.805	32.282	33.898	0					89	31	5	0	0	0	0.46038	1	10499	10499		21.747	4.8044	1	101080000	+		4668	20108	3115	3159	4557	4557					-0.08447537816959994
CAQNCGPQL	9	Unmodified	_CAQNCGPQL_					0	0	0			REV__GJD2|p.G132Afs*13|1|0.23|ENSG00000159248|chr15:34753031-34753049|CCCCCACCACTGCCCCCAC/-|frameshift_variant	REV__GJD2|p.G132Afs*13|1|0.23|ENSG00000159248|chr15:34753031-34753049|CCCCCACCACTGCCCCCAC/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	467.5993347167969	2	467.199487	932.384421	-0.64878	-0.00030311	-0.44758	-0.00020911	-1.0964	-0.00051222	467.19957053617077	32.042	1.8807	32.779	32.3	34.181	0.73691					86	36	5	0	0	0	0.32899	1	11246	11246		28.487	10.352	1	103340000	+		4669	20108	3115	3159	4558	4558					-0.08447537816959994
CAQNCGPQL	9	Unmodified	_CAQNCGPQL_					0	0	0			REV__GJD2|p.G132Afs*13|1|0.23|ENSG00000159248|chr15:34753031-34753049|CCCCCACCACTGCCCCCAC/-|frameshift_variant	REV__GJD2|p.G132Afs*13|1|0.23|ENSG00000159248|chr15:34753031-34753049|CCCCCACCACTGCCCCCAC/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	466.6637268066406	2	467.199487	932.384421	-0.64878	-0.00030311	-0.44758	-0.00020911	-1.0964	-0.00051222	467.19957053617077	32.042	1.8807	32.779	32.3	34.181	0.73691					86	36	5	0	0	0	0.47368	1	11399	11399		26.884	14.352	1	103340000	+		4670	20108	3115	3159	4559	4559					-0.08447537816959994
CAQRAQEEPQ	10	Unmodified	_CAQRAQEEPQ_					0	0	0		ENST00000554170.1_1_14:104177568-104180465:-|nuORF	ENST00000554170.1_1_14:104177568-104180465:-|nuORF	ENST00000554170.1_1_14:104177568-104180465:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	387.44525146484375	3	387.176867	1158.50877	-0.40465	-0.00015667	0.98507	0.0003814	0.58042	0.00022473	387.17715608755907	41.08	0.40639	41.855	41.692	42.098	0.77451					11	7	2	0	0	0	0.7245	1	15272	15272		0.56317	0	1	2025400			4671	13415	3116	3160	4560	4560					-0.06414368795935843
CATKLEMPIN	10	Unmodified	_CATKLEMPIN_					0	0	0			REV__ENSG00000162722|ENST00000366481|TRIM58	REV__ENSG00000162722|ENST00000366481|TRIM58	MSMS	A375_MHC_IP_R2	2	560.195068359375	2	560.280477	1118.5464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.849	1	65.587	65.087	66.087	0.73811								0	0	0	0.14804	1	24587	24587		21.537	1.0834	1		+		4672	20297	3117	3161	4561	4561					-0.008129938546744597
CCAFCMALNF	10	Unmodified	_CCAFCMALNF_					0	0	0			REV__ENST00000381192.8_1_X:2658911-2659019:+|nuORF	REV__ENST00000381192.8_1_X:2658911-2659019:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	562.7162475585938	2	561.715601	1121.41665	-0.76032	-0.00042709	-1.9403	-0.0010899	-2.7006	-0.001517	562.2157454873366	65.664	0.61023	66.402	66.121	66.731	0.73811					28	11	3	0	0	0	0.66712	1	24849	24849		15.847	7.2539	1	2202500	+		4673	24231	3118	3162	4562	4562					-0.13920209729826638
CCAPCCCPQCC	11	Unmodified	_CCAPCCCPQCC_					0	0	0			REV__KRTAP9-9|p.R48C|1|0.35|ENSG00000198083|chr17:41255527-41255527|C/T|missense_variant	REV__KRTAP9-9|p.R48C|1|0.35|ENSG00000198083|chr17:41255527-41255527|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	567.1666259765625	2	567.145314	1132.27608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.697	1	35.46	34.96	35.96	0.76338								0	0	0	0.1636	1	12540	12540		0	0	1		+		4674	26876	3119	3163	4563	4563					-0.2847719604155827
CCCAQCLS	8	Unmodified	_CCCAQCLS_					0	0	0			REV__ENST00000413916.5_1_7:44807392-44807602:+|nuORF	REV__ENST00000413916.5_1_7:44807392-44807602:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	829.6663818359375	1	830.266363	829.259086	-0.5558	-0.00046146	-1.6909	-0.0014039	-2.2467	-0.0018653	830.2670460345373	14.696	0.23619	14.696	14.593	14.83	0					54	33	2	0	0	0	0.972	1	3402	3402		0.69038	0.69038	1	170310	+		4675	24499	3120	3164	4564	4564					-0.16237289269201938
CCCCCCCASF	10	Unmodified	_CCCCCCCASF_					0	0	0			REV__ENST00000238892.3_1_2:46844356-46844401:+|nuORF	REV__ENST00000238892.3_1_2:46844356-46844401:+|nuORF	MSMS	A375_MHC_IP_R1	1	523.1163330078125	2	523.113483	1044.21241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.584	1	96.584	96.084	97.084	0								0	0	0	0.15628	1	35494	35494		0.45834	0.45834	1		+		4676	23091	3121	3165	4565	4565					-0.3079255647867285
CCCCCCCASF	10	Unmodified	_CCCCCCCASF_					0	0	0			REV__ENST00000238892.3_1_2:46844356-46844401:+|nuORF	REV__ENST00000238892.3_1_2:46844356-46844401:+|nuORF	MSMS	A375_MHC_IP_R2	2	523.0997314453125	2	523.113483	1044.21241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.037	1	40.812	40.312	41.312	0.77451								0	0	0	0.15628	1	14810	14810		0.45834	0.45834	1		+		4677	23091	3121	3165	4566	4566					-0.3079255647867285
CCCCCCCCCC	10	Unmodified	_CCCCCCCCCC_					0	0	0		ENST00000606389.5_1_2:69691306-69691378:-|nuORF	REV__ENST00000606389.5_1_2:69691306-69691378:-|nuORF	REV__ENST00000606389.5_1_2:69691306-69691378:-|nuORF	MSMS	A375_MHC_IP_R2	2	525.07080078125	2	525.058481	1048.10241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.78	1	84.519	84.019	85.019	0.73962								0	0	0	0.15642	1	31846	31846		0	0	1				4678	26540	3122	3166	4567	4567					-0.4197176440536623
CCCCCCCCCCF	11	Unmodified	_CCCCCCCCCCF_					0	0	0		ENST00000606389.5_1_2:69691306-69691378:-|nuORF	REV__ENST00000606389.5_1_2:69691306-69691378:-|nuORF	REV__ENST00000606389.5_1_2:69691306-69691378:-|nuORF	MSMS	A375_MHC_IP_R2	2	598.6121826171875	2	598.592688	1195.17082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.54	1	113.27	112.77	113.77	0.72458								0	0	0	0.1636	1	42426	42426		0	0	1				4679	26540	3123	3167	4568	4568					-0.41895519825516203
CCCCCCSDSSC	11	Unmodified	_CCCCCCSDSSC_					0	0	0		ENST00000531526.5_1_11:45944386-45945084:+|nuORF	ENST00000531526.5_1_11:45944386-45945084:+|nuORF	ENST00000531526.5_1_11:45944386-45945084:+|nuORF	MSMS	A375_MHC_IP_R2	2	558.5929565429688	2	558.606219	1115.19788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.087	1	83.827	83.327	84.327	0.73962								0	0	0	0.1636	1	31575	31575		0	0	1				4680	13172	3124	3168	4569	4569					-0.3551067341745693
CCCCCCSH	8	Unmodified	_CCCCCCSH_					0	0	0		nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	MSMS	A375_MHC_IP_R1	1	431.28826904296875	2	431.085582	860.156612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.799	1	24.799	24.299	25.299	0								0	0	0	0.16876	1	7121	7121		0	0	1				4681	12079	3125	3169	4570	4570					-0.2790602160397384
CCCCCCSH	8	Unmodified	_CCCCCCSH_					0	0	0		nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	MSMS	A375_MHC_IP_R1	1	431.2880554199219	2	431.085582	860.156612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.564	1	25.564	25.064	26.064	0								0	0	0	0.16876	1	7480	7480		0	0	1				4682	12079	3125	3169	4571	4571					-0.2790602160397384
CCCCCCSH	8	Unmodified	_CCCCCCSH_					0	0	0		nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	MSMS	A375_MHC_IP_R1	1	431.2882080078125	2	431.085582	860.156612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.758	1	29.758	29.258	30.258	0								0	0	0	0.16876	1	9371	9371		0	0	1				4683	12079	3125	3169	4572	4572					-0.2790602160397384
CCCCCCSH	8	Unmodified	_CCCCCCSH_					0	0	0		nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	MSMS	A375_MHC_IP_R1	1	431.1708984375	2	431.085582	860.156612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.789	1	35.789	35.289	36.289	0								0	0	0	0.16876	1	11930	11930		0	0	1				4684	12079	3125	3169	4573	4573					-0.2790602160397384
CCCCCCSH	8	Unmodified	_CCCCCCSH_					0	0	0		nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	MSMS	A375_MHC_IP_R1	1	431.1395263671875	2	431.085582	860.156612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.042	1	49.042	48.542	49.542	0								0	0	0	0.16876	1	17329	17329		0	0	1				4685	12079	3125	3169	4574	4574					-0.2790602160397384
CCCCCCSH	8	Unmodified	_CCCCCCSH_					0	0	0		nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	MSMS	A375_MHC_IP_R1	1	431.1186828613281	2	431.085582	860.156612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.582	1	76.582	76.082	77.082	0								0	0	0	0.16876	1	27919	27919		0	0	1				4686	12079	3125	3169	4575	4575					-0.2790602160397384
CCCCCCSH	8	Unmodified	_CCCCCCSH_					0	0	0		nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	MSMS	A375_MHC_IP_R2	2	431.2880554199219	2	431.085582	860.156612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.921	1	25.564	25.064	26.064	0.64368								0	0	0	0.16876	1	8267	8267		0	0	1				4687	12079	3125	3169	4576	4576					-0.2790602160397384
CCCCCCSH	8	Unmodified	_CCCCCCSH_					0	0	0		nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	MSMS	A375_MHC_IP_R2	2	431.2882385253906	2	431.085582	860.156612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.487	1	27.147	26.647	27.647	0.65992								0	0	0	0.16876	1	8954	8954		0	0	1				4688	12079	3125	3169	4577	4577					-0.2790602160397384
CCCCCCSH	8	Unmodified	_CCCCCCSH_					0	0	0		nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	MSMS	A375_MHC_IP_R2	2	431.28790283203125	2	431.085582	860.156612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.202	1	43.974	43.474	44.474	0.7724								0	0	0	0.16876	1	16090	16090		0	0	1				4689	12079	3125	3169	4578	4578					-0.2790602160397384
CCCCCCSH	8	Unmodified	_CCCCCCSH_					0	0	0		nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	MSMS	A375_MHC_IP_R2	2	431.2881164550781	2	431.085582	860.156612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.841	1	50.595	50.095	51.095	0.75406								0	0	0	0.16876	1	18733	18733		0	0	1				4690	12079	3125	3169	4579	4579					-0.2790602160397384
CCCCCCSH	8	Unmodified	_CCCCCCSH_					0	0	0		nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	MSMS	A375_MHC_IP_R2	2	431.163330078125	2	431.085582	860.156612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.295	1	60.042	59.542	60.542	0.74714								0	0	0	0.16876	1	22441	22441		0	0	1				4691	12079	3125	3169	4580	4580					-0.2790602160397384
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R1	1	505.1532897949219	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.152	1	31.152	30.652	31.652	0								0	0	0	0.15642	1	9958	9958		0	0	1				4692	7469	3126	3170	4581	4581					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R1	1	505.2008056640625	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.093	1	40.093	39.593	40.593	0								0	0	0	0.15642	1	13754	13754		0	0	1				4693	7469	3126	3170	4582	4582					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R1	1	505.10845947265625	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.095	1	53.095	52.595	53.595	0								0	0	0	0.15642	1	18915	18915		0	0	1				4694	7469	3126	3170	4583	4583					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R1	1	505.17132568359375	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.532	1	58.532	58.032	59.032	0								0	0	0	0.15642	1	21027	21027		0	0	1				4695	7469	3126	3170	4584	4584					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R1	1	505.1773681640625	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.011	1	66.011	65.511	66.511	0								0	0	0	0.15642	1	23901	23901		0	0	1				4696	7469	3126	3170	4585	4585					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R1	1	505.1666564941406	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.919	1	81.919	81.419	82.419	0								0	0	0	0.15642	1	29944	29944		0	0	1				4697	7469	3126	3170	4586	4586					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R1	1	505.1322937011719	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.285	1	96.285	95.785	96.785	0								0	0	0	0.15642	1	35387	35387		0	0	1				4698	7469	3126	3170	4587	4587					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R1	1	505.16583251953125	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.9	1	101.9	101.4	102.4	0								0	0	0	0.15642	1	37447	37447		0	0	1				4699	7469	3126	3170	4588	4588					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R1	1	505.1607360839844	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.3	1	102.3	101.8	102.8	0								0	0	0	0.15642	1	37596	37596		0	0	1				4700	7469	3126	3170	4589	4589					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R1	1	505.1661376953125	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.05	1	108.05	107.55	108.55	0								0	0	0	0.15642	1	39641	39641		0	0	1				4701	7469	3126	3170	4590	4590					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R1	1	505.1901550292969	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.33	1	108.33	107.83	108.83	0								0	0	0	0.15642	1	39740	39740		0	0	1				4702	7469	3126	3170	4591	4591					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R1	1	505.1831359863281	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.51	1	108.51	108.01	109.01	0								0	0	0	0.15642	1	39804	39804		0	0	1				4703	7469	3126	3170	4592	4592					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R1	1	504.75238037109375	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.1	1	129.1	128.6	129.6	0								0	0	0	0.15642	1	49614	49614		0	0	1				4704	7469	3126	3170	4593	4593					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R1	1	505.1841125488281	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.76	1	132.76	132.26	133.26	0								0	0	0	0.15642	1	51188	51188		0	0	1				4705	7469	3126	3170	4594	4594					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R2	2	505.2005920410156	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.185	1	39.96	39.46	40.46	0.77451								0	0	0	0.15642	1	14458	14458		0	0	1				4706	7469	3126	3170	4595	4595					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R2	2	505.1365966796875	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.083	1	73.819	73.319	74.319	0.73541								0	0	0	0.15642	1	27741	27741		0	0	1				4707	7469	3126	3170	4596	4596					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R2	2	505.1484069824219	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.866	1	74.603	74.103	75.103	0.73752								0	0	0	0.15642	1	28037	28037		0	0	1				4708	7469	3126	3170	4597	4597					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R2	2	505.1663513183594	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.562	1	82.305	81.805	82.805	0.74293								0	0	0	0.15642	1	30976	30976		0	0	1				4709	7469	3126	3170	4598	4598					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R2	2	505.14892578125	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.618	1	82.36	81.86	82.86	0.74293								0	0	0	0.15642	1	30999	30999		0	0	1				4710	7469	3126	3170	4599	4599					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R2	2	505.16632080078125	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.13	1	82.873	82.373	83.373	0.74293								0	0	0	0.15642	1	31196	31196		0	0	1				4711	7469	3126	3170	4600	4600					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R2	2	505.16632080078125	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.005	1	87.738	87.238	88.238	0.733								0	0	0	0.15642	1	33087	33087		0	0	1				4712	7469	3126	3170	4601	4601					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R2	2	505.1657409667969	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.267	1	88	87.5	88.5	0.733								0	0	0	0.15642	1	33187	33187		0	0	1				4713	7469	3126	3170	4602	4602					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R2	2	505.1697692871094	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.404	1	91.138	90.638	91.638	0.7345								0	0	0	0.15642	1	34398	34398		0	0	1				4714	7469	3126	3170	4603	4603					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R2	2	505.13128662109375	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.482	1	96.232	95.732	96.732	0.75045								0	0	0	0.15642	1	36269	36269		0	0	1				4715	7469	3126	3170	4604	4604					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R2	2	505.1662292480469	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.08	1	101.85	101.35	102.35	0.76428								0	0	0	0.15642	1	38319	38319		0	0	1				4716	7469	3126	3170	4605	4605					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R2	2	505.1605529785156	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.55	1	102.32	101.82	102.82	0.76428								0	0	0	0.15642	1	38493	38493		0	0	1				4717	7469	3126	3170	4606	4606					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R2	2	505.1840515136719	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.57	1	132.76	132.26	133.26	0.18953								0	0	0	0.15642	1	52151	52151		0	0	1				4718	7469	3126	3170	4607	4607					-0.30998394848859334
CCCCCSYCWP	10	Unmodified	_CCCCCSYCWP_					0	0	0		ENST00000326294.3_1_11:67203673-67203718:-|nuORF	ENST00000326294.3_1_11:67203673-67203718:-|nuORF	ENST00000326294.3_1_11:67203673-67203718:-|nuORF	MSMS	A375_MHC_IP_R1	1	585.640380859375	2	585.653829	1169.29311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.081	1	77.081	76.581	77.581	0								0	0	0	0.15628	1	28113	28113		0.45834	0	1				4719	10730	3127	3171	4608	4608					-0.2847695216412376
CCCCHGPD	8	Unmodified	_CCCCHGPD_					0	0	0			REV__ENST00000496381.5_1_20:31967493-31989268:-|nuORF	REV__ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	A375_MHC_IP_R1	1	419.3641662597656	2	419.110969	836.207385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.777	1	15.777	15.277	16.277	0								0	0	0	0.16876	1	3650	3650		0	0	1		+		4720	23775	3128	3172	4609	4609					-0.2172703296309919
CCCCHGPD	8	Unmodified	_CCCCHGPD_					0	0	0			REV__ENST00000496381.5_1_20:31967493-31989268:-|nuORF	REV__ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	A375_MHC_IP_R1	1	419.3642272949219	2	419.110969	836.207385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.56	1	16.56	16.06	17.06	0								0	0	0	0.16876	1	3858	3858		0	0	1		+		4721	23775	3128	3172	4610	4610					-0.2172703296309919
CCCCRHAC	8	Unmodified	_CCCCRHAC_					0	0	0		ENST00000375896.8_1_6:31632737-31632893:-|nuORF	ENST00000375896.8_1_6:31632737-31632893:-|nuORF	ENST00000375896.8_1_6:31632737-31632893:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	898.8063354492188	1	898.2609	897.253624	-0.42717	-0.00038371	0.27989	0.00025141	-0.14728	-0.0001323	898.2626170693784	126.92	0.1521	127.18	127.11	127.26	0.26593					4	2	2	0	0	0	0.972	1	49693	49693		0	0	1	4274500			4722	11279	3129	3173	4611	4611					-0.19911291332675773
CCCCWCFCCA	10	Unmodified	_CCCCWCFCCA_					0	0	0			REV__nc|ENSG00000147509|O76081-5|RGS20	REV__nc|ENSG00000147509|O76081-5|RGS20	MSMS	A375_MHC_IP_R2	2	572.66796875	2	572.637125	1143.2597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.128	1	25.771	25.271	26.271	0.64368								0	0	0	0.15642	1	8359	8359		0	0	1		+		4723	19592	3130	3174	4612	4612					-0.30620277207663094
CCCCWCFCCT	10	Unmodified	_CCCCWCFCCT_					0	0	0			REV__ENSG00000091844|ENST00000206262|RGS17	REV__ENSG00000091844|ENST00000206262|RGS17	MSMS	A375_MHC_IP_R2	2	587.7273559570312	2	587.642407	1173.27026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.9	1	93.639	93.139	94.139	0.73902								0	0	0	0.15642	1	35324	35324		0	0	1		+		4724	16958	3131	3175	4613	4613					-0.30944294553250984
CCCECDQSWHY	11	Unmodified	_CCCECDQSWHY_					0	0	0			REV__TNFRSF11A|p.R128C|1|0.52|ENSG00000141655|chr18:62354489-62354489|C/T|missense_variant	REV__TNFRSF11A|p.R128C|1|0.52|ENSG00000141655|chr18:62354489-62354489|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	459.3695373535156	3	459.476942	1375.409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.366	1	53.118	52.618	53.618	0.75225								0	0	0	0.16355	1	19737	19737		0.073264	0	1		+		4725	28137	3132	3176	4614	4614					-0.26369013788030315
CCCFCCCCCF	10	Unmodified	_CCCFCCCCCF_					0	0	0		ENSG00000163793|ENST00000296097|DNAJC5G	ENSG00000163793|ENST00000296097|DNAJC5G	ENSG00000163793|ENST00000296097|DNAJC5G	MSMS	A375_MHC_IP_R2	2	569.1294555664062	2	569.117711	1136.22087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.104	1	77.847	77.347	78.347	0.74293								0	0	0	0.15642	1	29278	29278		0	0	1				4726	6720	3133	3177	4615	4615					-0.3417932583372476
CCCFNCCCGK	10	Unmodified	_CCCFNCCCGK_					0	0	0		ENSG00000101152|ENST00000360864|DNAJC5;nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	MSMS	A375_MHC_IP_R2	2	542.1538696289062	2	542.153996	1082.29344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.35	1	127.61	127.11	128.11	0.26593								0	0	0	0.15642	1	49933	49933		0	0	1				4727	2256	3134	3178	4616	4616					-0.244415324442798
CCCFSDETV	9	Unmodified	_CCCFSDETV_					0	0	0			REV__nc|ENSG00000081913|O60346-2|PHLPP1	REV__nc|ENSG00000081913|O60346-2|PHLPP1	MSMS	A375_MHC_IP_R2	2	503.6831970214844	2	503.669371	1005.32419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.437	1	93.176	92.676	93.676	0.73902								0	0	0	0.15486	1	35154	35154		4.756	2.6963	1		+		4728	16781	3135	3179	4617	4617					-0.17826016262370104
CCCHCCEP	8	Unmodified	_CCCHCCEP_					0	0	0		ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	MSMS	A375_MHC_IP_R1	1	449.1397399902344	2	449.112654	896.210756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.281	1	32.281	31.781	32.781	0								0	0	0	0.16876	1	10416	10416		0	0	1				4729	9485	3136	3180	4618	4618					-0.24150106180752573
CCCHCCEP	8	Unmodified	_CCCHCCEP_					0	0	0		ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	MSMS	A375_MHC_IP_R1	1	449.1167297363281	2	449.112654	896.210756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.689	1	36.689	36.189	37.189	0								0	0	0	0.16876	1	12299	12299		0	0	1				4730	9485	3136	3180	4619	4619					-0.24150106180752573
CCCHCCEP	8	Unmodified	_CCCHCCEP_					0	0	0		ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	MSMS	A375_MHC_IP_R1	1	449.18157958984375	2	449.112654	896.210756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.63	1	42.63	42.13	43.13	0								0	0	0	0.16876	1	14780	14780		0	0	1				4731	9485	3136	3180	4620	4620					-0.24150106180752573
CCCHCCEP	8	Unmodified	_CCCHCCEP_					0	0	0		ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	MSMS	A375_MHC_IP_R1	1	449.16351318359375	2	449.112654	896.210756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.064	1	52.064	51.564	52.564	0								0	0	0	0.16876	1	18501	18501		0	0	1				4732	9485	3136	3180	4621	4621					-0.24150106180752573
CCCHCCEP	8	Unmodified	_CCCHCCEP_					0	0	0		ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	MSMS	A375_MHC_IP_R1	1	449.1525573730469	2	449.112654	896.210756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.208	1	75.208	74.708	75.708	0								0	0	0	0.16876	1	27400	27400		0	0	1				4733	9485	3136	3180	4622	4622					-0.24150106180752573
CCCHCCEP	8	Unmodified	_CCCHCCEP_					0	0	0		ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	MSMS	A375_MHC_IP_R2	2	449.15045166015625	2	449.112654	896.210756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.462	1	28.141	27.641	28.641	0.67857								0	0	0	0.16876	1	9383	9383		0	0	1				4734	9485	3136	3180	4623	4623					-0.24150106180752573
CCCHCCEP	8	Unmodified	_CCCHCCEP_					0	0	0		ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	MSMS	A375_MHC_IP_R2	2	449.1164855957031	2	449.112654	896.210756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.835	1	36.598	36.098	37.098	0.76338								0	0	0	0.16876	1	13018	13018		0	0	1				4735	9485	3136	3180	4624	4624					-0.24150106180752573
CCCHCCEP	8	Unmodified	_CCCHCCEP_					0	0	0		ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	MSMS	A375_MHC_IP_R2	2	449.146728515625	2	449.112654	896.210756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.879	1	38.653	38.153	39.153	0.77451								0	0	0	0.16876	1	13897	13897		0	0	1				4736	9485	3136	3180	4625	4625					-0.24150106180752573
CCCHCCEP	8	Unmodified	_CCCHCCEP_					0	0	0		ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	MSMS	A375_MHC_IP_R2	2	449.1815185546875	2	449.112654	896.210756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.631	1	42.406	41.906	42.906	0.77451								0	0	0	0.16876	1	15455	15455		0	0	1				4737	9485	3136	3180	4626	4626					-0.24150106180752573
CCCHCCEP	8	Unmodified	_CCCHCCEP_					0	0	0		ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	MSMS	A375_MHC_IP_R2	2	449.1632995605469	2	449.112654	896.210756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.095	1	51.849	51.349	52.349	0.75406								0	0	0	0.16876	1	19224	19224		0	0	1				4738	9485	3136	3180	4627	4627					-0.24150106180752573
CCCHCCEP	8	Unmodified	_CCCHCCEP_					0	0	0		ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	MSMS	A375_MHC_IP_R2	2	449.139404296875	2	449.112654	896.210756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.397	1	55.148	54.648	55.648	0.75075								0	0	0	0.16876	1	20526	20526		0	0	1				4739	9485	3136	3180	4628	4628					-0.24150106180752573
CCCHCCEP	8	Unmodified	_CCCHCCEP_					0	0	0		ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	MSMS	A375_MHC_IP_R2	2	449.18170166015625	2	449.112654	896.210756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.969	1	88.701	88.201	89.201	0.7318								0	0	0	0.16876	1	33470	33470		0	0	1				4740	9485	3136	3180	4629	4629					-0.24150106180752573
CCCHCCEP	8	Unmodified	_CCCHCCEP_					0	0	0		ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	MSMS	A375_MHC_IP_R2	2	449.11871337890625	2	449.112654	896.210756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.569	1	92.303	91.803	92.803	0.7345								0	0	0	0.16876	1	34829	34829		0	0	1				4741	9485	3136	3180	4630	4630					-0.24150106180752573
CCCHWCSWSCW	11	Unmodified	_CCCHWCSWSCW_					0	0	0		ENST00000440083.6_1_12:6443346-6451099:-|nuORF	ENST00000440083.6_1_12:6443346-6451099:-|nuORF	ENST00000440083.6_1_12:6443346-6451099:-|nuORF	MSMS	A375_MHC_IP_R2	2	702.566650390625	2	702.215974	1402.41739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.27	1	113.98	113.48	114.48	0.70985								0	0	0	0.16353	1	42707	42707		0.35063	0.35063	1				4742	11968	3137	3181	4631	4631					-0.26771738352431385
CCCKCNPD	8	Unmodified	_CCCKCNPD_					0	0	0			REV__nc|ENSG00000155890|Q8IWZ5-2|TRIM42	REV__nc|ENSG00000155890|Q8IWZ5-2|TRIM42	MSMS	A375_MHC_IP_R2	2	443.1635437011719	2	443.139726	884.2649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.999	1	89.731	89.231	90.231	0.7318								0	0	0	0.16876	1	33873	33873		2.5775	1.7838	1		+		4743	19945	3138	3182	4632	4632					-0.18186190757546683
CCCPCCGG	8	Unmodified	_CCCPCCGG_					0	0	0		ENST00000599649.5_1_19:52149845-52150035:-|nuORF	ENST00000599649.5_1_19:52149845-52150035:-|nuORF	ENST00000599649.5_1_19:52149845-52150035:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	746.0582275390625	1	745.159455	744.152178	-0.9045	-0.00067399	3.9708	0.0029589	3.0663	0.0022849	745.1621597097909	124.42	0.50465	124.42	124.09	124.6	0					13	9	2	0	0	0	0.77861	1	46985	46985		0	0	1	24666000			4744	13860	3139	3183	4633	4633					-0.23013162755216854
CCCPCCSCCS	10	Unmodified	_CCCPCCSCCS_					0	0	0		ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	MSMS	A375_MHC_IP_R1	1	506.1845397949219	2	506.103115	1010.19168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.231	1	24.231	23.731	24.731	0								0	0	0	0.15642	1	6828	6828		0	0	1				4745	12080	3140	3184	4634	4634					-0.3130114685832268
CCCPCCSCCS	10	Unmodified	_CCCPCCSCCS_					0	0	0		ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	MSMS	A375_MHC_IP_R1	1	506.1607666015625	2	506.103115	1010.19168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.085	1	38.085	37.585	38.585	0								0	0	0	0.15642	1	12886	12886		0	0	1				4746	12080	3140	3184	4635	4635					-0.3130114685832268
CCCPCCSCCS	10	Unmodified	_CCCPCCSCCS_					0	0	0		ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	MSMS	A375_MHC_IP_R1	1	506.12420654296875	2	506.103115	1010.19168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.575	1	41.575	41.075	42.075	0								0	0	0	0.15642	1	14364	14364		0	0	1				4747	12080	3140	3184	4636	4636					-0.3130114685832268
CCCPCCSCCS	10	Unmodified	_CCCPCCSCCS_					0	0	0		ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	MSMS	A375_MHC_IP_R1	1	506.19732666015625	2	506.103115	1010.19168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.441	1	46.441	45.941	46.941	0								0	0	0	0.15642	1	16295	16295		0	0	1				4748	12080	3140	3184	4637	4637					-0.3130114685832268
CCCPCCSCCS	10	Unmodified	_CCCPCCSCCS_					0	0	0		ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	MSMS	A375_MHC_IP_R1	1	506.1844787597656	2	506.103115	1010.19168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.03	1	48.03	47.53	48.53	0								0	0	0	0.15642	1	16922	16922		0	0	1				4749	12080	3140	3184	4638	4638					-0.3130114685832268
CCCPCCSCCS	10	Unmodified	_CCCPCCSCCS_					0	0	0		ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	MSMS	A375_MHC_IP_R1	1	506.17022705078125	2	506.103115	1010.19168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.21	1	49.21	48.71	49.71	0								0	0	0	0.15642	1	17397	17397		0	0	1				4750	12080	3140	3184	4639	4639					-0.3130114685832268
CCCPCCSCCS	10	Unmodified	_CCCPCCSCCS_					0	0	0		ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	MSMS	A375_MHC_IP_R1	1	506.1943359375	2	506.103115	1010.19168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.009	1	64.009	63.509	64.509	0								0	0	0	0.15642	1	23151	23151		0	0	1				4751	12080	3140	3184	4640	4640					-0.3130114685832268
CCCPCCSCCS	10	Unmodified	_CCCPCCSCCS_					0	0	0		ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	MSMS	A375_MHC_IP_R1	1	506.00970458984375	2	506.103115	1010.19168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.846	1	89.846	89.346	90.346	0								0	0	0	0.15642	1	33014	33014		0	0	1				4752	12080	3140	3184	4641	4641					-0.3130114685832268
CCCPCCSCCS	10	Unmodified	_CCCPCCSCCS_					0	0	0		ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	MSMS	A375_MHC_IP_R1	1	506.1458435058594	2	506.103115	1010.19168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.184	1	91.184	90.684	91.684	0								0	0	0	0.15642	1	33505	33505		0	0	1				4753	12080	3140	3184	4642	4642					-0.3130114685832268
CCCPCCSCCS	10	Unmodified	_CCCPCCSCCS_					0	0	0		ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	MSMS	A375_MHC_IP_R2	2	506.435546875	2	506.103115	1010.19168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.651	1	20.262	19.762	20.762	0.61029								0	0	0	0.15642	1	6054	6054		0	0	1				4754	12080	3140	3184	4643	4643					-0.3130114685832268
CCCPCCSCCS	10	Unmodified	_CCCPCCSCCS_					0	0	0		ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	MSMS	A375_MHC_IP_R2	2	506.1375427246094	2	506.103115	1010.19168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.593	1	35.357	34.857	35.857	0.76338								0	0	0	0.15642	1	12493	12493		0	0	1				4755	12080	3140	3184	4644	4644					-0.3130114685832268
CCCPCCSCCS	10	Unmodified	_CCCPCCSCCS_					0	0	0		ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	MSMS	A375_MHC_IP_R2	2	506.1608581542969	2	506.103115	1010.19168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.247	1	38.018	37.518	38.518	0.7709								0	0	0	0.15642	1	13617	13617		0	0	1				4756	12080	3140	3184	4645	4645					-0.3130114685832268
CCCPCCSCCS	10	Unmodified	_CCCPCCSCCS_					0	0	0		ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	MSMS	A375_MHC_IP_R2	2	506.1974792480469	2	506.103115	1010.19168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.387	1	46.152	45.652	46.652	0.76519								0	0	0	0.15642	1	16964	16964		0	0	1				4757	12080	3140	3184	4646	4646					-0.3130114685832268
CCCPCCSCCS	10	Unmodified	_CCCPCCSCCS_					0	0	0		ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	MSMS	A375_MHC_IP_R2	2	506.142822265625	2	506.103115	1010.19168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.817	1	54.568	54.068	55.068	0.75105								0	0	0	0.15642	1	20322	20322		0	0	1				4758	12080	3140	3184	4647	4647					-0.3130114685832268
CCCPCCSCCS	10	Unmodified	_CCCPCCSCCS_					0	0	0		ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	MSMS	A375_MHC_IP_R2	2	506.1252746582031	2	506.103115	1010.19168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.432	1	86.168	85.668	86.668	0.73601								0	0	0	0.15642	1	32479	32479		0	0	1				4759	12080	3140	3184	4648	4648					-0.3130114685832268
CCCPCCSCCS	10	Unmodified	_CCCPCCSCCS_					0	0	0		ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	MSMS	A375_MHC_IP_R2	2	506.196533203125	2	506.103115	1010.19168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.952	1	95.702	95.202	96.202	0.74976								0	0	0	0.15642	1	36076	36076		0	0	1				4760	12080	3140	3184	4649	4649					-0.3130114685832268
CCCQRSVGAVY	11	Unmodified	_CCCQRSVGAVY_					0	0	0		ENST00000475028.2_1_6:679447-689206:-|nuORF	ENST00000475028.2_1_6:679447-689206:-|nuORF	ENST00000475028.2_1_6:679447-689206:-|nuORF	MSMS	A375_MHC_IP_R1	1	594.6881103515625	2	594.751561	1187.48857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.389	1	23.389	22.889	23.889	0								0	0	0	0.16249	1	6411	6411		5.7319	0	1				4761	12414	3141	3185	4650	4650					-0.09767579051754183
CCDSSSGGC	9	Unmodified	_CCDSSSGGC_					0	0	0		LCE1F|p.G53D|1|0.11|ENSG00000240386|chr1:152776529-152776529|G/A|missense_variant	LCE1F|p.G53D|1|0.11|ENSG00000240386|chr1:152776529-152776529|G/A|missense_variant	LCE1F|p.G53D|1|0.11|ENSG00000240386|chr1:152776529-152776529|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	818.6119995117188	1	818.21135	817.204074	-0.52507	-0.00042962	0.19702	0.00016121	-0.32804	-0.00026841	818.2127712914947	65.561	1.3731	65.561	65.156	66.529	0					35	26	2	0	0	0	0.77827	1	23802	23802		0	0	1	1571100			4762	14287	3142	3186	4651	4651					-0.21184004536098655
CCDSSSGGC	9	Unmodified	_CCDSSSGGC_					0	0	0		LCE1F|p.G53D|1|0.11|ENSG00000240386|chr1:152776529-152776529|G/A|missense_variant	LCE1F|p.G53D|1|0.11|ENSG00000240386|chr1:152776529-152776529|G/A|missense_variant	LCE1F|p.G53D|1|0.11|ENSG00000240386|chr1:152776529-152776529|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	818.4224243164062	1	818.21135	817.204074	-0.36538	-0.00029896	0.24309	0.0001989	-0.12229	-0.00010006	818.2126092774344	99.038	1.6285	99.038	97.845	99.473	0					41	31	2	0	0	0	0.77827	1	36088	36088		0	0	1	1984600			4763	14287	3142	3186	4652	4652					-0.21184004536098655
CCGCCGPQCCC	11	Unmodified	_CCGCCGPQCCC_					0	0	0			REV__ENSG00000186860|ENST00000334202|KRTAP17-1	REV__ENSG00000186860|ENST00000334202|KRTAP17-1	MSMS	A375_MHC_IP_R1	1	540.1873779296875	2	540.121839	1078.22912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.033	1	92.033	91.533	92.533	0								0	0	0	0.1636	1	33820	33820		0	0	1		+		4764	21990	3143	3187	4653	4653					-0.3068605559271873
CCGCCGPQCCC	11	Unmodified	_CCGCCGPQCCC_					0	0	0			REV__ENSG00000186860|ENST00000334202|KRTAP17-1	REV__ENSG00000186860|ENST00000334202|KRTAP17-1	MSMS	A375_MHC_IP_R1	1	540.1436767578125	2	540.121839	1078.22912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.23	1	102.23	101.73	102.73	0								0	0	0	0.1636	1	37565	37565		0	0	1		+		4765	21990	3143	3187	4654	4654					-0.3068605559271873
CCGCCGPQCCC	11	Unmodified	_CCGCCGPQCCC_					0	0	0			REV__ENSG00000186860|ENST00000334202|KRTAP17-1	REV__ENSG00000186860|ENST00000334202|KRTAP17-1	MSMS	A375_MHC_IP_R2	2	540.1670532226562	2	540.121839	1078.22912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.57	1	103.33	102.83	103.83	0.76428								0	0	0	0.1636	1	38861	38861		0	0	1		+		4766	21990	3143	3187	4655	4655					-0.3068605559271873
CCGHCFQEL	9	Unmodified	_CCGHCFQEL_					0	0	0		nc|ENSG00000103995|O94986-1|CEP152;nc|ENSG00000103995|O94986-2|CEP152;ENSG00000103995|ENST00000380950|CEP152	nc|ENSG00000103995|O94986-1|CEP152	nc|ENSG00000103995|O94986-1|CEP152	MSMS	A375_MHC_IP_R2	2	520.2313842773438	2	520.193348	1038.37214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.891	1	93.63	93.13	94.13	0.73902								0	0	0	0.15486	1	35320	35320		2.3027	0	1				4767	2478	3144	3188	4656	4656					-0.14550897551657727
CCGSKAIWAL	10	Unmodified	_CCGSKAIWAL_					0	0	0		ENST00000394808.2_1_6:53072259-53072454:-|nuORF	ENST00000394808.2_1_6:53072259-53072454:-|nuORF	ENST00000394808.2_1_6:53072259-53072454:-|nuORF	MSMS	A375_MHC_IP_R2	2	351.12744140625	3	351.173629	1050.49906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.82	1	143.85	143.35	144.35	0.024414								0	0	0	0.15583	1	56196	56196		1.9064	0.71303	1				4768	11458	3145	3189	4657	4657					-0.024172283350253565
CCHEDMCNY	9	Unmodified	_CCHEDMCNY_					0	0	0		ENSG00000095739|ENST00000375533|BAMBI;ENST00000497699.1_1_10:28966826-28970509:+|nuORF	ENSG00000095739|ENST00000375533|BAMBI	ENSG00000095739|ENST00000375533|BAMBI	MULTI-MSMS	A375_MHC_IP_R1	1	559.1773681640625	2	559.16393	1116.31331	-0.39541	-0.0002211	1.014	0.00056698	0.61856	0.00034588	559.1644051822329	35.179	0.45777	35.179	34.963	35.421	0					12	8	2	0	0	0	0.77154	1	11586	11586		0.6015	0.20078	1	1653300			4769	2047	3146	3190	4658	4658					-0.24019741908273318
CCHEDMCNY	9	Unmodified	_CCHEDMCNY_					0	0	0		ENSG00000095739|ENST00000375533|BAMBI;ENST00000497699.1_1_10:28966826-28970509:+|nuORF	ENSG00000095739|ENST00000375533|BAMBI	ENSG00000095739|ENST00000375533|BAMBI	MULTI-MSMS	A375_MHC_IP_R2	2	559.2108154296875	2	559.16393	1116.31331	-0.89158	-0.00049854	0.7267	0.00040635	-0.16488	-9.2196E-05	559.1642096306867	34.547	0.50763	35.302	35.111	35.619	0.75505					12	9	2	0	0	0	0.75764	1	12508	12508		1.8442	0	1	2015900			4770	2047	3146	3190	4659	4659					-0.24019741908273318
CCHEDMCNY	9	Unmodified	_CCHEDMCNY_					0	0	0		ENSG00000095739|ENST00000375533|BAMBI;ENST00000497699.1_1_10:28966826-28970509:+|nuORF	ENSG00000095739|ENST00000375533|BAMBI	ENSG00000095739|ENST00000375533|BAMBI	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	559.16393	1116.31331	-0.39541	-0.0002211	1.014	0.00056698	0.61856	0.00034588	559.1644051822329	35.179	0.45777	35.179	34.963	35.421	0	-0.061668	0.00020091	NaN	1.8442	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1653300			4771	2047	3146	3190							-0.24019741908273318
CCHEDMCNY	9	Unmodified	_CCHEDMCNY_					0	0	0		ENSG00000095739|ENST00000375533|BAMBI;ENST00000497699.1_1_10:28966826-28970509:+|nuORF	ENSG00000095739|ENST00000375533|BAMBI	ENSG00000095739|ENST00000375533|BAMBI	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	559.16393	1116.31331	-0.89158	-0.00049854	0.7267	0.00040635	-0.16488	-9.2196E-05	559.1642096306867	34.547	0.50763	35.302	35.111	35.619	0.75505	0.061668	-0.00012035	NaN	1.8442	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2015900			4772	2047	3146	3190							-0.24019741908273318
CCIELDFDYMC	11	Unmodified	_CCIELDFDYMC_					0	0	0			REV__ENST00000548679.5_1_12:72291037-72301659:+|nuORF	REV__ENST00000548679.5_1_12:72291037-72301659:+|nuORF	MSMS	A375_MHC_IP_R2	2	677.7935180664062	2	677.744753	1353.47495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.46	1	135.6	135.1	136.1	0.13901								0	0	0	0.16334	1	53251	53251		1.3295	0.13619	1		+		4773	26016	3147	3191	4660	4660					-0.1876461766587454
CCMLECGDMGE	11	Unmodified	_CCMLECGDMGE_					0	0	0			REV__nc|ENSG00000114251|P41221-2|WNT5A	REV__nc|ENSG00000114251|P41221-2|WNT5A	MSMS	A375_MHC_IP_R2	2	595.660400390625	2	595.68638	1189.35821	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.5	1	108.26	107.76	108.76	0.75436								0	0	0	0.16334	1	40612	40612		1.3295	1.0225	1		+		4774	17817	3148	3192	4661	4661					-0.228896791572879
CCPCCCCPRCC	11	Unmodified	_CCPCCCCPRCC_					0	0	0			REV__KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	REV__KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	597.11474609375	2	597.152616	1192.29068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.787	1	72.521	72.021	73.021	0.73421								0	0	0	0.16354	1	27236	27236		0.30703	0.30703	1		+		4775	26875	3149	3193	4662	4662					-0.29777447165065496
CCPDCDGCEY	10	Unmodified	_CCPDCDGCEY_					0	0	0		nc|ENSG00000135253|Q6ZWJ8|KCP;ENSG00000135253|ENST00000610776|KCP	nc|ENSG00000135253|Q6ZWJ8|KCP	nc|ENSG00000135253|Q6ZWJ8|KCP	MSMS	A375_MHC_IP_R1	1	554.1481323242188	2	554.147945	1106.28134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.495	1	24.495	23.995	24.995	0								0	0	0	0.15628	1	6966	6966		0.45834	0	1				4776	4661	3150	3194	4663	4663					-0.2675515438209004
CCPDGCHF	8	Unmodified	_CCPDGCHF_					0	0	0			REV__nc|ENSG00000186891|Q9Y5U5-3|TNFRSF18	REV__nc|ENSG00000186891|Q9Y5U5-3|TNFRSF18	MSMS	A375_MHC_IP_R2	2	440.9549560546875	2	441.140584	880.266615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.795	1	58.544	58.044	59.044	0.74894								0	0	0	0.16876	1	21856	21856		0.79363	0.19213	1		+		4777	21994	3151	3195	4664	4664					-0.17830813677267088
CCRACMCGNL	10	Unmodified	_CCRACMCGNL_					0	0	0		ENST00000589874.2_1_19:1432091-1433000:+|nuORF	ENST00000589874.2_1_19:1432091-1433000:+|nuORF	ENST00000589874.2_1_19:1432091-1433000:+|nuORF	MSMS	A375_MHC_IP_R2	2	537.4801635742188	2	537.19451	1072.37447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.0858	1	3.5217	3.0217	4.0217	0.43585								0	0	0	0.15591	1	998	998		1.6526	0	1				4778	13777	3152	3196	4665	4665					-0.15882508409845286
CCREGQDPSY	10	Unmodified	_CCREGQDPSY_					0	0	0		ENST00000609041.1_1_20:60581499-60581991:-|nuORF	ENST00000609041.1_1_20:60581499-60581991:-|nuORF	ENST00000609041.1_1_20:60581499-60581991:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	579.620849609375	2	579.221148	1156.42774	-1.0699	-0.00061971	0.51129	0.00029615	-0.55861	-0.00032356	579.2214331284973	29.005	0.49799	29.704	29.534	30.032	0.69872					16	9	2	0	0	0	0.52785	1	10093	10093		26.268	2.2476	1	11796000			4779	13930	3153	3197	4666	4666					-0.1442139283033157
CCSCMCDEDNA	11	Unmodified	_CCSCMCDEDNA_					0	0	0		ENSG00000172538|ENST00000311787|FAM170B	ENSG00000172538|ENST00000311787|FAM170B	ENSG00000172538|ENST00000311787|FAM170B	MSMS	A375_MHC_IP_R1	1	597.18408203125	2	597.155444	1192.29634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.943	1	84.943	84.443	85.443	0								0	0	0	0.1636	1	31123	31123		0	0	1				4780	7720	3154	3198	4667	4667					-0.2921203057640014
CCSDHQHCC	9	Unmodified	_CCSDHQHCC_					0	0	0		nc|ENSG00000030582|P28799-3|GRN;ENSG00000030582|ENST00000053867|GRN	nc|ENSG00000030582|P28799-3|GRN	nc|ENSG00000030582|P28799-3|GRN	MULTI-SECPEP	A375_MHC_IP_R2	2	1035.690185546875	1	1035.28995	1034.28268	-0.15293	-0.00015833	0.18541	0.00019195	0.032477	3.3623E-05	1035.290255053038	34.752	0.50601	35.515	35.171	35.677	0.76338					15	9	2	0	0	0	0.81896	1	12575	12575		0	0	1	2209800			4781	1110	3155	3199	4668	4668					-0.23309475502674104
CCSFFFFYRLH	11	Unmodified	_CCSFFFFYRLH_					0	0	0		ENST00000534336.1_1_11:65271698-65271851:+|nuORF	ENST00000534336.1_1_11:65271698-65271851:+|nuORF	ENST00000534336.1_1_11:65271698-65271851:+|nuORF	MSMS	A375_MHC_IP_R1	1	735.2344970703125	2	735.328293	1468.64203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.33	1	117.33	116.83	117.83	0								0	0	0	0.16258	1	43080	43080		5.2969	1.7004	1				4782	13210	3156	3200	4669	4669					-0.0735422094378464
CCSPQCCSSVC	11	Unmodified	_CCSPQCCSSVC_					0	0	0			REV__nc|ENSG00000198083|Q9BYP9|KRTAP9-9	REV__nc|ENSG00000198083|Q9BYP9|KRTAP9-9	MSMS	A375_MHC_IP_R1	1	560.1823120117188	2	560.17344	1118.33233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.149	1	94.149	93.649	94.649	0								0	0	0	0.16334	1	34604	34604		1.3295	0.5359	1		+		4783	22019	3157	3201	4670	4670					-0.22210528608889035
CCSSECCY	8	Unmodified	_CCSSECCY_					0	0	0			REV__ENSG00000198271|ENST00000343246|KRTAP4-5	REV__ENSG00000198271|ENST00000343246|KRTAP4-5	MSMS	A375_MHC_IP_R1	1	449.1397705078125	2	449.115917	896.217281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.332	1	44.332	43.832	44.832	0								0	0	0	0.16876	1	15462	15462		0.79363	0.79363	1		+		4784	22358	3158	3202	4671	4671					-0.23497889748387024
CCSTRTMWW	9	Unmodified	_CCSTRTMWW_					0	0	0			REV__ENST00000465181.1_1_3:38175644-38175893:-|nuORF	REV__ENST00000465181.1_1_3:38175644-38175893:-|nuORF	MSMS	A375_MHC_IP_R2	2	587.1517944335938	2	587.235547	1172.45654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.857	1	92.591	92.091	93.091	0.7345								0	0	0	0.15486	1	34934	34934		7.9102	0	1		+		4785	25022	3159	3203	4672	4672					-0.12278946734886631
CCVEKCEIY	9	Unmodified	_CCVEKCEIY_					0	0	0			REV__CON__Q28065	REV__CON__Q28065	MULTI-MSMS	A375_MHC_IP_R2	2	545.1897583007812	2	545.224313	1088.43407	-1.0228	-0.00055767	-0.069208	-3.7734E-05	-1.092	-0.0005954	545.2243226550984	71.256	0.86127	71.991	71.706	72.567	0.73421					35	16	3	0	0	0	0.60101	1	27051	27051		14.838	0	1	9814800	+	+	4786	15873	3160	3204	4673	4673					-0.10660590923157542
CCVTFIKNNNN	11	Unmodified	_CCVTFIKNNNN_					0	0	0			REV__ENST00000568049.1_1_16:22096476-22096536:+|nuORF	REV__ENST00000568049.1_1_16:22096476-22096536:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	423.9278869628906	3	423.862002	1268.56418	0.092324	3.9133E-05	0.67004	0.000284	0.76236	0.00032314	423.86229892614335	35.788	0.9666	35.788	35.167	36.133	0					31	18	2	0	0	0	0.73378	1	11805	11805		2.4348	0.69251	1	1943200	+		4787	26257	3161	3205	4674	4674					-0.05936278599801881
CCWHWECDCYC	11	Unmodified	_CCWHWECDCYC_					0	0	0		nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MSMS	A375_MHC_IP_R2	2	725.7028198242188	2	725.710721	1449.40689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.84	1	118.45	117.95	118.95	0.60909								0	0	0	0.1636	1	44655	44655		0	0	1				4788	14853	3162	3206	4675	4675					-0.2998376579748765
CCWNSEHVTF	10	Unmodified	_CCWNSEHVTF_					0	0	0		nc|ENSG00000171365|P51795-1|CLCN5;ENSG00000171365|ENST00000376091|CLCN5	nc|ENSG00000171365|P51795-1|CLCN5	nc|ENSG00000171365|P51795-1|CLCN5	MULTI-MSMS	A375_MHC_IP_R2	2	613.1980590820312	2	613.241883	1224.46921	-0.48549	-0.00029772	-0.77595	-0.00047584	-1.2614	-0.00077356	613.241501380652	88.162	1.0129	88.894	88.418	89.431	0.7318					29	19	2	0	0	0	0.70329	1	33693	33693		10.824	4.1008	1	2702100			4789	7597	3163	3207	4676	4676					-0.1340421207100917
CCWNSEHVTF	10	Unmodified	_CCWNSEHVTF_					0	0	0		nc|ENSG00000171365|P51795-1|CLCN5;ENSG00000171365|ENST00000376091|CLCN5	nc|ENSG00000171365|P51795-1|CLCN5	nc|ENSG00000171365|P51795-1|CLCN5	MSMS	A375_MHC_IP_R2	2	613.1980590820312	2	613.241883	1224.46921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.088	1	89.82	89.32	90.32	0.7318								0	0	0	0.15308	1	33906	33906		10.824	2.2306	1				4790	7597	3163	3207	4677	4677					-0.1340421207100917
CCYCCCCLCCC	11	Unmodified	_CCYCCCCLCCC_					0	0	0		ENSG00000101152|ENST00000360864|DNAJC5;nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	MSMS	A375_MHC_IP_R2	2	611.83154296875	2	611.627585	1221.24062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.614	1	86.35	85.85	86.85	0.73601								0	0	0	0.1636	1	32551	32551		0	0	1				4791	2256	3164	3208	4678	4678					-0.36115317885241893
CDAGYHMECL	10	Unmodified	_CDAGYHMECL_					0	0	0		nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MSMS	A375_MHC_IP_R1	1	381.541748046875	3	381.141889	1140.40384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.226	1	75.226	74.726	75.726	0								0	0	0	0.15531	1	27407	27407		1.7423	1.0446	1				4792	14477	3165	3209	4679	4679					-0.160749495883465
CDCCDGTDEY	10	Unmodified	_CDCCDGTDEY_					0	0	0		nc|ENSG00000130175|P14314-2|PRKCSH;nc|ENSG00000130175|P14314|PRKCSH;ENSG00000130175|ENST00000677123|PRKCSH	nc|ENSG00000130175|P14314-2|PRKCSH	nc|ENSG00000130175|P14314-2|PRKCSH	MSMS	A375_MHC_IP_R1	1	562.211669921875	2	562.154282	1122.29401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.959	1	78.959	78.459	79.459	0								0	0	0	0.15628	1	28819	28819		0.45834	0.45834	1				4793	4227	3166	3210	4680	4680					-0.262244197182099
CDCPEPCA	8	Unmodified	_CDCPEPCA_					0	0	0			REV__ISLR|p.E27K|1|0.13|ENSG00000129009|chr15:74174937-74174937|G/A|missense_variant	REV__ISLR|p.E27K|1|0.13|ENSG00000129009|chr15:74174937-74174937|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	837.6573486328125	1	837.257572	836.250296	-0.54694	-0.00045793	-0.039817	-3.3337E-05	-0.58676	-0.00049127	837.2575237004177	144.9	0.44759	144.92	144.76	145.21	0.021408					22	13	3	0	0	0	0.77861	1	56578	56578		0	0	1	2108600	+		4794	18479	3167	3211	4681	4681					-0.17437939634044142
CDCYDDLCSYM	11	Unmodified	_CDCYDDLCSYM_					0	0	0		ALMS1|p.R338C|2|0.26|ENSG00000116127|chr2:73424677-73424677|C/T|missense_variant	ALMS1|p.R338C|2|0.26|ENSG00000116127|chr2:73424677-73424677|C/T|missense_variant	ALMS1|p.R338C|2|0.26|ENSG00000116127|chr2:73424677-73424677|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	444.1650695800781	3	444.141337	1329.40218	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.88	1	107.88	107.38	108.38	0								0	0	0	0.16351	1	39581	39581		0.45452	0.29519	1				4795	105	3168	3212	4682	4682					-0.24934371459312388
CDDDQMSN	8	Unmodified	_CDDDQMSN_					0	0	0		nc|ENSG00000143437|P27540-2|ARNT;nc|ENSG00000143437|P27540-3|ARNT;nc|ENSG00000143437|P27540-4|ARNT;ENSG00000143437|ENST00000358595|ARNT	nc|ENSG00000143437|P27540-2|ARNT	nc|ENSG00000143437|P27540-2|ARNT	MSMS	A375_MHC_IP_R1	1	464.15032958984375	2	464.144575	926.274596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.19	1	48.19	47.69	48.69	0								0	0	0	0.16876	1	16987	16987		2.5775	0	1				4796	5391	3169	3213	4683	4683					-0.19149007946793972
CDDDQMSN	8	Unmodified	_CDDDQMSN_					0	0	0		nc|ENSG00000143437|P27540-2|ARNT;nc|ENSG00000143437|P27540-3|ARNT;nc|ENSG00000143437|P27540-4|ARNT;ENSG00000143437|ENST00000358595|ARNT	nc|ENSG00000143437|P27540-2|ARNT	nc|ENSG00000143437|P27540-2|ARNT	MSMS	A375_MHC_IP_R1	1	464.14044189453125	2	464.144575	926.274596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.181	1	60.181	59.681	60.681	0								0	0	0	0.16876	1	21664	21664		2.5775	0	1				4797	5391	3169	3213	4684	4684					-0.19149007946793972
CDDDQMSN	8	Unmodified	_CDDDQMSN_					0	0	0		nc|ENSG00000143437|P27540-2|ARNT;nc|ENSG00000143437|P27540-3|ARNT;nc|ENSG00000143437|P27540-4|ARNT;ENSG00000143437|ENST00000358595|ARNT	nc|ENSG00000143437|P27540-2|ARNT	nc|ENSG00000143437|P27540-2|ARNT	MSMS	A375_MHC_IP_R2	2	464.13311767578125	2	464.144575	926.274596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.275	1	96.026	95.526	96.526	0.75045								0	0	0	0.16876	1	36194	36194		2.5775	0	1				4798	5391	3169	3213	4685	4685					-0.19149007946793972
CDDLHPSRSKL	11	Unmodified	_CDDLHPSRSKL_					0	0	0			REV__ENSG00000118412|ENST00000551025|CASP8AP2	REV__ENSG00000118412|ENST00000551025|CASP8AP2	MSMS	A375_MHC_IP_R1	1	423.8563537597656	3	424.2118	1269.61357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.001	1	16.001	15.501	16.501	0								0	0	0	0.16358	1	3704	3704		0.094841	0	1		+		4799	18038	3170	3214	4686	4686					-0.010452473193709011
CDEGGEYD	8	Unmodified	_CDEGGEYD_					0	0	0		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	MSMS	A375_MHC_IP_R1	1	444.1646423339844	2	444.139815	886.265077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.58	1	108.58	108.08	109.08	0								0	0	0	0.16876	1	39831	39831		0.69038	0.69038	1				4800	2443	3171	3215	4687	4687					-0.18260452960680595
CDEGGEYD	8	Unmodified	_CDEGGEYD_					0	0	0		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	MSMS	A375_MHC_IP_R2	2	444.16412353515625	2	444.139815	886.265077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.03	1	107.79	107.29	108.29	0.75436								0	0	0	0.16876	1	40443	40443		0.69038	0.69038	1				4801	2443	3171	3215	4688	4688					-0.18260452960680595
CDEGGEYD	8	Unmodified	_CDEGGEYD_					0	0	0		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	MSMS	A375_MHC_IP_R2	2	444.18255615234375	2	444.139815	886.265077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.78	1	133.94	133.44	134.44	0.16487								0	0	0	0.16876	1	52624	52624		0.69038	0.69038	1				4802	2443	3171	3215	4689	4689					-0.18260452960680595
CDEGGEYD	8	Unmodified	_CDEGGEYD_					0	0	0		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	MSMS	A375_MHC_IP_R2	2	444.1824645996094	2	444.139815	886.265077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.35	1	134.49	133.99	134.99	0.13901								0	0	0	0.16876	1	52850	52850		2.5775	1.8871	1				4803	2443	3171	3215	4690	4690					-0.18260452960680595
CDEYGENF	8	Unmodified	_CDEYGENF_					0	0	0		ENSG00000197961|ENST00000320451|ZNF121	ENSG00000197961|ENST00000320451|ZNF121	ENSG00000197961|ENST00000320451|ZNF121	MSMS	A375_MHC_IP_R2	2	488.6702575683594	2	488.671282	975.328012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.512	1	82.255	81.755	82.755	0.74293								0	0	0	0.16876	1	30956	30956		5.7604	0	1				4804	9214	3172	3216	4691	4691					-0.16063887172629165
CDFADQLEK	9	Unmodified	_CDFADQLEK_					0	0	0			REV__nc|ENSG00000138639|Q8N264-3|ARHGAP24	REV__nc|ENSG00000138639|Q8N264-3|ARHGAP24	MSMS	A375_MHC_IP_R2	2	534.6891479492188	2	534.736957	1067.45936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.865	1	55.616	55.116	56.116	0.75075								0	0	0	0.15486	1	20714	20714		10.824	1.4408	1		+		4805	19105	3173	3217	4692	4692					-0.07167076804739736
CDFPVWDDY	9	Unmodified	_CDFPVWDDY_					0	0	0		NPY5R|p.S25C|1|0.25|ENSG00000164129|chr4:163350347-163350347|C/G|missense_variant	NPY5R|p.S25C|1|0.25|ENSG00000164129|chr4:163350347-163350347|C/G|missense_variant	NPY5R|p.S25C|1|0.25|ENSG00000164129|chr4:163350347-163350347|C/G|missense_variant	MSMS	A375_MHC_IP_R1	1	580.2347412109375	2	580.223682	1158.43281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.984	1	86.984	86.484	87.484	0								0	0	0	0.15486	1	31909	31909		4.756	0.42677	1				4806	15028	3174	3218	4693	4693					-0.14006765696080947
CDFSIHFSSF	10	Unmodified	_CDFSIHFSSF_					0	0	0		nc|ENSG00000093183|Q9BRL7-3|SEC22C;nc|ENSG00000093183|Q9BRL7-2|SEC22C;ENSG00000093183|ENST00000264454|SEC22C	nc|ENSG00000093183|Q9BRL7-3|SEC22C	nc|ENSG00000093183|Q9BRL7-3|SEC22C	MULTI-SECPEP	A375_MHC_IP_R2	2	595.652099609375	2	595.252774	1188.491	-0.69609	-0.00041435	0.22177	0.00013201	-0.47432	-0.00028234	595.2529200091257	66.442	0.5126	67.178	66.932	67.445	0.73631					17	9	2	0	0	0	0.87163	1	25192	25192		19.257	19.257	1	2226200			4807	2022	3175	3219	4694	4694					-0.09571084050799072
CDGDNDCEDD	10	Unmodified	_CDGDNDCEDD_					0	0	0		ENSG00000134569|ENST00000378623|LRP4;LRP4|p.R108Pfs*4|1|0.39|ENSG00000134569|chr11:46899970-46899971|-/G|frameshift_variant	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MSMS	A375_MHC_IP_R2	2	550.6168823242188	2	550.642593	1099.27063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.718	1	77.459	76.959	77.959	0.74052								0	0	0	0.15642	1	29130	29130		0	0	1				4808	4587	3176	3220	4695	4695					-0.27503142231194033
CDGDNDCEDDS	11	Unmodified	_CDGDNDCEDDS_					0	0	0		ENSG00000134569|ENST00000378623|LRP4;LRP4|p.R108Pfs*4|1|0.39|ENSG00000134569|chr11:46899970-46899971|-/G|frameshift_variant	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MSMS	A375_MHC_IP_R2	2	594.1632690429688	2	594.158607	1186.30266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.564	1	71.299	70.799	71.799	0.73421								0	0	0	0.1636	1	26749	26749		0	0	1				4809	4587	3177	3221	4696	4696					-0.283037745480442
CDGDNDCEDDS	11	Unmodified	_CDGDNDCEDDS_					0	0	0		ENSG00000134569|ENST00000378623|LRP4;LRP4|p.R108Pfs*4|1|0.39|ENSG00000134569|chr11:46899970-46899971|-/G|frameshift_variant	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MSMS	A375_MHC_IP_R2	2	594.2047119140625	2	594.158607	1186.30266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.304	1	73.039	72.539	73.539	0.73521								0	0	0	0.1636	1	27437	27437		0	0	1				4810	4587	3177	3221	4697	4697					-0.283037745480442
CDGDNDCEDDS	11	Unmodified	_CDGDNDCEDDS_					0	0	0		ENSG00000134569|ENST00000378623|LRP4;LRP4|p.R108Pfs*4|1|0.39|ENSG00000134569|chr11:46899970-46899971|-/G|frameshift_variant	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MSMS	A375_MHC_IP_R2	2	594.2450561523438	2	594.158607	1186.30266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.48	1	84.22	83.72	84.72	0.73962								0	0	0	0.1636	1	31729	31729		0	0	1				4811	4587	3177	3221	4698	4698					-0.283037745480442
CDGDNDCEDDS	11	Unmodified	_CDGDNDCEDDS_					0	0	0		ENSG00000134569|ENST00000378623|LRP4;LRP4|p.R108Pfs*4|1|0.39|ENSG00000134569|chr11:46899970-46899971|-/G|frameshift_variant	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MSMS	A375_MHC_IP_R2	2	594.0714721679688	2	594.158607	1186.30266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.506	1	85.242	84.742	85.742	0.73601								0	0	0	0.1636	1	32125	32125		0	0	1				4812	4587	3177	3221	4699	4699					-0.283037745480442
CDGDNDCEDDS	11	Unmodified	_CDGDNDCEDDS_					0	0	0		ENSG00000134569|ENST00000378623|LRP4;LRP4|p.R108Pfs*4|1|0.39|ENSG00000134569|chr11:46899970-46899971|-/G|frameshift_variant	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MSMS	A375_MHC_IP_R2	2	594.1721801757812	2	594.158607	1186.30266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.304	1	86.04	85.54	86.54	0.73601								0	0	0	0.1636	1	32429	32429		0	0	1				4813	4587	3177	3221	4700	4700					-0.283037745480442
CDGDNDCEDDS	11	Unmodified	_CDGDNDCEDDS_					0	0	0		ENSG00000134569|ENST00000378623|LRP4;LRP4|p.R108Pfs*4|1|0.39|ENSG00000134569|chr11:46899970-46899971|-/G|frameshift_variant	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MSMS	A375_MHC_IP_R2	2	594.136962890625	2	594.158607	1186.30266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.706	1	89.438	88.938	89.938	0.7318								0	0	0	0.1636	1	33758	33758		0	0	1				4814	4587	3177	3221	4701	4701					-0.283037745480442
CDGDNDCEDDS	11	Unmodified	_CDGDNDCEDDS_					0	0	0		ENSG00000134569|ENST00000378623|LRP4;LRP4|p.R108Pfs*4|1|0.39|ENSG00000134569|chr11:46899970-46899971|-/G|frameshift_variant	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MSMS	A375_MHC_IP_R2	2	594.0653076171875	2	594.158607	1186.30266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.785	1	94.53	94.03	95.03	0.74474								0	0	0	0.1636	1	35649	35649		0	0	1				4815	4587	3177	3221	4702	4702					-0.283037745480442
CDGDNDCEDDS	11	Unmodified	_CDGDNDCEDDS_					0	0	0		ENSG00000134569|ENST00000378623|LRP4;LRP4|p.R108Pfs*4|1|0.39|ENSG00000134569|chr11:46899970-46899971|-/G|frameshift_variant	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MSMS	A375_MHC_IP_R2	2	594.3245239257812	2	594.158607	1186.30266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.773	1	100.54	100.04	101.04	0.76278								0	0	0	0.1636	1	37845	37845		0	0	1				4816	4587	3177	3221	4703	4703					-0.283037745480442
CDGDNDCEDDS	11	Unmodified	_CDGDNDCEDDS_					0	0	0		ENSG00000134569|ENST00000378623|LRP4;LRP4|p.R108Pfs*4|1|0.39|ENSG00000134569|chr11:46899970-46899971|-/G|frameshift_variant	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MSMS	A375_MHC_IP_R2	2	594.208984375	2	594.158607	1186.30266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.39	1	130.61	130.11	131.11	0.2142								0	0	0	0.1636	1	51259	51259		0	0	1				4817	4587	3177	3221	4704	4704					-0.283037745480442
CDGFPECD	8	Unmodified	_CDGFPECD_					0	0	0		ENSG00000162337|ENST00000294304|LRP5;ENST00000529993.5_1_11:68171724-68216535:+|nuORF	ENSG00000162337|ENST00000294304|LRP5	ENSG00000162337|ENST00000294304|LRP5	MSMS	A375_MHC_IP_R2	2	443.1568603515625	2	443.141304	884.268054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.43	1	111.17	110.67	111.67	0.73692								0	0	0	0.16876	1	41658	41658		0.69038	0	1				4818	6518	3178	3222	4705	4705					-0.17870901107528425
CDGKMKLSF	9	Unmodified	_CDGKMKLSF_					0	0	0			REV__ENST00000445359.1_1_9:38643302-38643692:+|nuORF	REV__ENST00000445359.1_1_9:38643302-38643692:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	515.1480712890625	2	514.748813	1027.48307	-0.73939	-0.0003806	-0.24572	-0.00012648	-0.98511	-0.00050709	514.748711726264	67.526	0.50981	68.262	68.001	68.511	0.73631					15	9	2	0	0	0	0.46465	1	25588	25588		21.537	21.537	1	2237900	+		4819	24843	3179	3223	4706	4706					-0.029569345719210105
CDGSPSWPSPM	11	Unmodified	_CDGSPSWPSPM_					0	0	0			REV__MAPK7|p.A424S|1|0.21|ENSG00000166484|chr17:19381479-19381479|G/T|missense_variant	REV__MAPK7|p.A424S|1|0.21|ENSG00000166484|chr17:19381479-19381479|G/T|missense_variant	MSMS	A375_MHC_IP_R2	2	582.173828125	2	582.228442	1162.44233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.656	1	55.407	54.907	55.907	0.75075								0	0	0	0.16191	1	20629	20629		8.7454	0.15213	1		+		4820	26986	3180	3224	4707	4707					-0.13239320682191646
CDINCCCDPD	10	Unmodified	_CDINCCCDPD_					0	0	0		ENST00000464809.5_1_12:111052207-111065748:+|nuORF;ENST00000478122.6_1_12:111052207-111066834:+|nuORF;nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1	ENST00000464809.5_1_12:111052207-111065748:+|nuORF	ENST00000464809.5_1_12:111052207-111065748:+|nuORF	MSMS	A375_MHC_IP_R2	2	550.6483154296875	2	550.66122	1099.30789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.746	1	34.499	33.999	34.999	0.75225								0	0	0	0.15541	1	12113	12113		3.2813	1.7994	1				4821	9484	3181	3225	4708	4708					-0.23779465490770235
CDKVFNRNSN	10	Unmodified	_CDKVFNRNSN_					0	0	0		nc|ENSG00000167554|Q8N9Z0-2|ZNF610;ENSG00000167554|ENST00000403906|ZNF610	nc|ENSG00000167554|Q8N9Z0-2|ZNF610	nc|ENSG00000167554|Q8N9Z0-2|ZNF610	MULTI-SECPEP	A375_MHC_IP_R1	1	598.6904907226562	2	598.777479	1195.5404	-0.22173	-0.00013276	-2.8749	-0.0017214	-3.0966	-0.0018542	599.2789647355057	82.43	0.50836	82.43	82.113	82.622	0					15	9	2	0	0	0	0.87043	1	30098	30098		20.415	1.1575	1	1771500			4822	7195	3182	3226	4709	4709					-0.04954376041973774
CDKVFNRNSN	10	Unmodified	_CDKVFNRNSN_					0	0	0		nc|ENSG00000167554|Q8N9Z0-2|ZNF610;ENSG00000167554|ENST00000403906|ZNF610	nc|ENSG00000167554|Q8N9Z0-2|ZNF610	nc|ENSG00000167554|Q8N9Z0-2|ZNF610	MULTI-MATCH	A375_MHC_IP_R2	2		2	598.777479	1195.5404	-0.60516	-0.00036235	-2.9009	-0.001737	-3.506	-0.0020993	599.2789294666393	81.715	0.60686	82.458	82.128	82.735	0.74294	0.013982	-1.6708E-05	NaN	20.415	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1814400			4823	7195	3182	3226							-0.04954376041973774
CDLECSHTCNY	11	Unmodified	_CDLECSHTCNY_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6;ENST00000517873.2_1_8:47884723-47885119:-|nuORF	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MSMS	A375_MHC_IP_R2	2	644.2427368164062	2	644.225573	1286.43659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.53	1	104.29	103.79	104.79	0.76428								0	0	0	0.16297	1	39208	39208		3.2813	0	1				4824	1483	3183	3227	4710	4710					-0.19516787256179668
CDNDYDCQW	9	Unmodified	_CDNDYDCQW_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MSMS	A375_MHC_IP_R1	1	581.14990234375	2	581.184231	1160.35391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.305	1	99.305	98.805	99.805	0								0	0	0	0.15486	1	36479	36479		0.6015	0.076735	1		+		4825	18241	3184	3228	4711	4711					-0.2198536099267585
CDQFSRLLC	9	Unmodified	_CDQFSRLLC_					0	0	0		nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-3|CIITA	nc|ENSG00000179583|P33076|CIITA;nc|ENSG00000179583|P33076-3|CIITA	nc|ENSG00000179583|P33076|CIITA	MSMS	A375_MHC_IP_R2	2	542.694580078125	2	542.749344	1083.48414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.847	1	73.582	73.082	74.082	0.73541								0	0	0	0.15486	1	27651	27651		10.824	0.64053	1				4826	8241;14793	3185	3229	4712	4712					-0.05426720202990509
CDQGHDYTM	9	Unmodified	_CDQGHDYTM_					0	0	0		ZNF276|p.E405Kfs*47|1|0.08|ENSG00000158805|chr16:89733344-89733344|T/-|frameshift_variant;ENST00000561536.5_1_16:89789452-89804651:+|nuORF;nc|ENSG00000158805|Q8N554-2|ZNF276;ENSG00000158805|ENST00000443381|ZNF276	ZNF276|p.E405Kfs*47|1|0.08|ENSG00000158805|chr16:89733344-89733344|T/-|frameshift_variant	ZNF276|p.E405Kfs*47|1|0.08|ENSG00000158805|chr16:89733344-89733344|T/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	535.1732788085938	2	535.189316	1068.36408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.528	1	51.282	50.782	51.782	0.75406								0	0	0	0.15486	1	19003	19003		4.3292	1.334	1				4827	6332	3186	3230	4713	4713					-0.16736753267446147
CDRTFQCYSL	10	Unmodified	_CDRTFQCYSL_					0	0	0			REV__ENSG00000172086|ENST00000347055|KRCC1	REV__ENSG00000172086|ENST00000347055|KRCC1	MULTI-MSMS	A375_MHC_IP_R2	2	412.9106750488281	3	412.510969	1234.51108	-0.39936	-0.00016474	0.02138	8.8194E-06	-0.37798	-0.00015592	412.5109137546498	57.005	0.4081	57.755	57.561	57.969	0.75014					14	7	2	0	0	0	0.71361	1	21571	21571		3.3196	1.0669	1	2936100	+		4828	21120	3187	3231	4714	4714					-0.09679656382490975
CDRTFQCYSL	10	Unmodified	_CDRTFQCYSL_					0	0	0			REV__ENSG00000172086|ENST00000347055|KRCC1	REV__ENSG00000172086|ENST00000347055|KRCC1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	412.510969	1234.51108	0.18693	7.7112E-05	-0.29254	-0.00012067	-0.1056	-4.3562E-05	412.5109345500431	57.741	0.50593	57.741	57.518	58.024	0	-0.0068796	-0.00025401	NaN	3.3196	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3511400	+		4829	21120	3187	3231							-0.09679656382490975
CDRWMHAVC	9	Unmodified	_CDRWMHAVC_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.E4343Kfs*13|1|0.36|ENSG00000055609|chr7:152148900-152148900|C/-|frameshift_variant;KMT2C|p.Q2128Rfs*25|1|0.04|ENSG00000055609|chr7:152181476-152181477|CT/-|frameshift_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MSMS	A375_MHC_IP_R1	1	560.7269287109375	2	560.727889	1119.44122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.325	1	75.325	74.825	75.825	0								0	0	0	0.15486	1	27443	27443		4.3292	0	1				4830	1271	3188	3232	4715	4715					-0.11371813532082342
CDVCGKAFSY	10	Unmodified	_CDVCGKAFSY_					0	0	0		nc|ENSG00000278970|Q8NB50-3|ZFP62;ENSG00000196670|ENST00000502412|ZFP62	nc|ENSG00000278970|Q8NB50-3|ZFP62	nc|ENSG00000278970|Q8NB50-3|ZFP62	MSMS	A375_MHC_IP_R2	2	546.6724243164062	2	546.728077	1091.4416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.93	1	27.59	27.09	28.09	0.65992								0	0	0	0.15353	1	9150	9150		9.3831	0	1				4831	9074	3189	3233	4716	4716					-0.10046115331260808
CDVENHCSY	9	Unmodified	_CDVENHCSY_					0	0	0			REV__ENST00000417559.1_1_10:82295376-82295445:-|nuORF	REV__ENST00000417559.1_1_10:82295376-82295445:-|nuORF	MSMS	A375_MHC_IP_R2	2	535.145751953125	2	535.189316	1068.36408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.99	1	51.744	51.244	52.244	0.75406								0	0	0	0.15486	1	19181	19181		2.0598	0.73022	1		+		4832	24544	3190	3234	4717	4717					-0.1673675326742341
CDYHGHSRK	9	Unmodified	_CDYHGHSRK_					0	0	0		nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1	nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MULTI-MSMS	A375_MHC_IP_R2	2	551.6947021484375	2	551.745982	1101.47741	-0.79419	-0.00043819	0.063051	3.4788E-05	-0.73114	-0.00040341	551.7460571495142	67.363	1.1696	68.099	67.342	68.511	0.73631					36	22	2	0	0	0	0.70886	1	25468	25468		6.2058	0.44535	1	2181200			4833	4639	3191	3235	4718	4718					-0.06926897039375035
CEDCCFKWR	9	Unmodified	_CEDCCFKWR_					0	0	0			REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF	REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF	MSMS	A375_MHC_IP_R1	1	595.2298583984375	2	595.233004	1188.45146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.33	1	101.33	100.83	101.83	0								0	0	0	0.15486	1	37241	37241		7.9102	4.6288	1		+		4834	24321	3192	3236	4719	4719					-0.135232505975182
CEDSIGYKN	9	Unmodified	_CEDSIGYKN_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	A375_MHC_IP_R1	1	514.6636352539062	2	514.721307	1027.42806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.375	1	47.375	46.875	47.875	0								0	0	0	0.15486	1	16662	16662		8.7454	0.15213	1		+		4835	19932	3193	3237	4720	4720					-0.08455649838811041
CEECCCCCCCD	11	Unmodified	_CEECCCCCCCD_					0	0	0			REV__ENSG00000170075|ENST00000367282|GPR37L1	REV__ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R2	2	608.6822509765625	2	608.605361	1215.19617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.755	1	92.489	91.989	92.989	0.7345								0	0	0	0.1636	1	34898	34898		0	0	1		+		4836	20964	3194	3238	4721	4721					-0.40282050497739874
CEFCGCDFSGE	11	Unmodified	_CEFCGCDFSGE_					0	0	0		ENSG00000076604|ENST00000262395|TRAF4;nc|ENSG00000076604|Q9BUZ4-2|TRAF4	ENSG00000076604|ENST00000262395|TRAF4	ENSG00000076604|ENST00000262395|TRAF4	MSMS	A375_MHC_IP_R1	1	598.7407836914062	2	598.688292	1195.36203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.84	1	141.84	141.34	142.34	0								0	0	0	0.16334	1	54432	54432		1.3295	1.0225	1				4837	1637	3195	3239	4722	4722					-0.22783550067538272
CEHEENPCQ	9	Unmodified	_CEHEENPCQ_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MSMS	A375_MHC_IP_R1	1	544.7687377929688	2	544.692223	1087.36989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.61	1	147.61	147.11	148.11	0								0	0	0	0.15486	1	56398	56398		0.52476	0	1				4838	5332	3196	3240	4723	4723					-0.17029654755788215
CEICPFVAP	9	Unmodified	_CEICPFVAP_					0	0	0			REV__ENSG00000011451|ENST00000673675|WIZ	REV__ENSG00000011451|ENST00000673675|WIZ	MSMS	A375_MHC_IP_R1	1	489.6903381347656	2	489.724806	977.43506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.884	1	67.884	67.384	68.384	0								0	0	0	0.15486	1	24605	24605		5.2307	0	1		+		4839	16210	3197	3241	4724	4724					-0.05456008491967168
CEIFCDPHE	9	Unmodified	_CEIFCDPHE_					0	0	0			REV__TKT|p.R358C|1|0.23|ENSG00000163931|chr3:53230492-53230492|G/A|missense_variant	REV__TKT|p.R358C|1|0.23|ENSG00000163931|chr3:53230492-53230492|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	546.6388549804688	2	546.709885	1091.40522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.118	1	87.851	87.351	88.351	0.733								0	0	0	0.15486	1	33130	33130		11.64	7.3111	1		+		4840	28116	3198	3242	4725	4725					-0.13682992227950308
CEKRKRRRERR	11	Unmodified	_CEKRKRRRERR_					0	0	0		ENST00000280571.9_1_12:123920858-123920954:-|nuORF	ENST00000280571.9_1_12:123920858-123920954:-|nuORF	ENST00000280571.9_1_12:123920858-123920954:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	525.6935424804688	3	524.974452	1571.90153	-0.54692	-0.00028712	0.64874	0.00034057	0.10182	5.3453E-05	524.9748235843534	75.088	1.2704	75.826	74.907	76.178	0.73751					50	24	4	0	0	0	0.73881	1	28436	28436		0.50596	0.09769	1	13380000			4841	10419	3199	3243	4726	4726					0.1384528578219033
CELRRRWHRAR	11	Unmodified	_CELRRRWHRAR_					0	0	0		ENST00000451786.5_1_7:130630372-130630459:-|nuORF	ENST00000451786.5_1_7:130630372-130630459:-|nuORF	ENST00000451786.5_1_7:130630372-130630459:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	514.0164184570312	3	513.616376	1537.8273	-0.58179	-0.00029882	0.34455	0.00017697	-0.23724	-0.00012185	513.6166447758493	31.258	0.35461	31.258	31.009	31.363	0					15	6	3	0	0	0	0.73502	1	9994	9994		4.1166	0.52395	1	4571100			4842	12078	3200	3244	4727	4727					0.0798994269071045
CENCKYRREEM	11	Unmodified	_CENCKYRREEM_					0	0	0			REV__ENST00000440790.6_1_6:28134336-28135143:+|nuORF	REV__ENST00000440790.6_1_6:28134336-28135143:+|nuORF	MSMS	A375_MHC_IP_R2	2	487.4396667480469	3	487.540823	1459.60064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.736	1	24.366	23.866	24.866	0.63014								0	0	0	0.16291	1	7686	7686		3.5927	1.1579	1		+		4843	24801	3201	3245	4728	4728					-0.11077769765438461
CEPGKVCGAS	10	Unmodified	_CEPGKVCGAS_					0	0	0		nc|ENSG00000233237|Q9H8W2|LINC00472;ENST00000426635.6_1_6:72128415-72130440:-|nuORF	nc|ENSG00000233237|Q9H8W2|LINC00472	nc|ENSG00000233237|Q9H8W2|LINC00472	MSMS	A375_MHC_IP_R1	1	475.6603698730469	2	475.707145	949.399737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.106	1	48.106	47.606	48.606	0								0	0	0	0.15353	1	16952	16952		9.3831	0.78985	1				4844	11811	3202	3246	4729	4729					-0.07698671019761605
CEPGKVCGAS	10	Unmodified	_CEPGKVCGAS_					0	0	0		nc|ENSG00000233237|Q9H8W2|LINC00472;ENST00000426635.6_1_6:72128415-72130440:-|nuORF	nc|ENSG00000233237|Q9H8W2|LINC00472	nc|ENSG00000233237|Q9H8W2|LINC00472	MSMS	A375_MHC_IP_R1	1	475.66046142578125	2	475.707145	949.399737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.951	1	50.951	50.451	51.451	0								0	0	0	0.15435	1	18071	18071		6.7232	0.96273	1				4845	11811	3202	3246	4730	4730					-0.07698671019761605
CEPGKVCGAS	10	Unmodified	_CEPGKVCGAS_					0	0	0		nc|ENSG00000233237|Q9H8W2|LINC00472;ENST00000426635.6_1_6:72128415-72130440:-|nuORF	nc|ENSG00000233237|Q9H8W2|LINC00472	nc|ENSG00000233237|Q9H8W2|LINC00472	MSMS	A375_MHC_IP_R1	1	475.6602783203125	2	475.707145	949.399737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.202	1	54.202	53.702	54.702	0								0	0	0	0.15451	1	19340	19340		6.2058	0.97511	1				4846	11811	3202	3246	4731	4731					-0.07698671019761605
CEPGKVCGAS	10	Unmodified	_CEPGKVCGAS_					0	0	0		nc|ENSG00000233237|Q9H8W2|LINC00472;ENST00000426635.6_1_6:72128415-72130440:-|nuORF	nc|ENSG00000233237|Q9H8W2|LINC00472	nc|ENSG00000233237|Q9H8W2|LINC00472	MSMS	A375_MHC_IP_R1	1	475.6600341796875	2	475.707145	949.399737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.038	1	57.038	56.538	57.538	0								0	0	0	0.15308	1	20447	20447		10.824	1.4765	1				4847	11811	3202	3246	4732	4732					-0.07698671019761605
CEQVLEHLV	9	Unmodified	_CEQVLEHLV_					0	0	0		nc|ENSG00000133454|Q8IUG5-2|MYO18B;MYO18B|p.L2340Sfs*16|1|0.33|ENSG00000133454|chr22:26026991-26026991|A/-|frameshift_variant;ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B	nc|ENSG00000133454|Q8IUG5-2|MYO18B	nc|ENSG00000133454|Q8IUG5-2|MYO18B	MULTI-SECPEP	A375_MHC_IP_R2	2	535.6941528320312	2	535.270967	1068.52738	-1.166	-0.00062414	-1.0844	-0.00058044	-2.2504	-0.0012046	535.2702544641583	37.5	0.15527	38.271	38.171	38.327	0.7709					4	2	2	0	0	0	0.67483	1	13712	13712		20.454	7.4112	1	703410			4848	4511	3203	3247	4733	4733					-0.004142071540854886
CERCAPGYY	9	Unmodified	_CERCAPGYY_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4;ENST00000518842.1_1_6:112510294-112512967:-|nuORF;ENSG00000142798|ENST00000374695|HSPG2	nc|ENSG00000112769|Q16363-2|LAMA4;ENSG00000142798|ENST00000374695|HSPG2	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-MSMS	A375_MHC_IP_R2	2	531.66455078125	2	531.212595	1060.41064	-0.58471	-0.0003106	-2.1668	-0.001151	-2.7515	-0.0014616	531.7127660323019	83.876	0.41046	84.616	84.458	84.868	0.73962					12	7	2	0	0	0	0.65721	1	31860	31860		10.824	1.4408	1	1310100			4849	3109;5332	3204	3248	4734	4734					-0.11715268645480137
CETNRCCCECD	11	Unmodified	_CETNRCCCECD_					0	0	0			REV__TNFRSF11A|p.R128C|1|0.52|ENSG00000141655|chr18:62354489-62354489|C/T|missense_variant	REV__TNFRSF11A|p.R128C|1|0.52|ENSG00000141655|chr18:62354489-62354489|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	639.7005615234375	2	639.687443	1277.36033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.96	1	100.96	100.46	101.46	0								0	0	0	0.16337	1	37108	37108		1.1933	0.59184	1		+		4850	28137	3205	3249	4735	4735					-0.2672525041946301
CEYCNRACAKP	11	Unmodified	_CEYCNRACAKP_					0	0	0		ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	MULTI-SECPEP	A375_MHC_IP_R2	2	420.24346923828125	3	419.843954	1256.51003	-0.38623	-0.00016216	-0.20027	-8.4083E-05	-0.5865	-0.00024624	420.1782710750213	60.898	0.96286	61.643	61.057	62.02	0.74503					27	18	2	0	0	0	0.99424	1	23051	23051		4.1166	0.27072	1	8791000			4851	2051	3206	3250	4736	4736					-0.10796194023032513
CFCFQSKESYS	11	Unmodified	_CFCFQSKESYS_					0	0	0			REV__nc|ENSG00000123427|Q96AZ1-2|EEF1AKMT3	REV__nc|ENSG00000123427|Q96AZ1-2|EEF1AKMT3	MULTI-SECPEP	A375_MHC_IP_R2	2	665.1663208007812	2	664.767931	1327.52131	-1.0808	-0.0007185	-0.74623	-0.00049607	-1.8271	-0.0012146	664.7674431289896	38.063	0.61561	38.837	38.483	39.098	0.77451					23	11	3	0	0	0	0.86796	1	13959	13959		26.268	3.5319	1	4671700	+		4852	18242	3207	3251	4737	4737					-0.1293509344791346
CFCSYGDIGNQ	11	Unmodified	_CFCSYGDIGNQ_					0	0	0			REV__CRB1|p.D165N|1|0.14|ENSG00000134376|chr1:197328844-197328844|G/A|missense_variant	REV__CRB1|p.D165N|1|0.14|ENSG00000134376|chr1:197328844-197328844|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	603.662841796875	2	603.731348	1205.44814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.194	1	91.194	90.694	91.694	0								0	0	0	0.16203	1	33509	33509		8.1555	1.9497	1		+		4853	15913	3208	3252	4738	4738					-0.1463622217052034
CFCYYSSEY	9	Unmodified	_CFCYYSSEY_					0	0	0		CTSC|p.R339C|1|0.34|ENSG00000109861|chr11:88294383-88294383|G/A|missense_variant	CTSC|p.R339C|1|0.34|ENSG00000109861|chr11:88294383-88294383|G/A|missense_variant	CTSC|p.R339C|1|0.34|ENSG00000109861|chr11:88294383-88294383|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	582.6671142578125	2	582.704268	1163.39398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.84	1	104.84	104.34	105.34	0								0	0	0	0.15486	1	38494	38494		4.756	0.42677	1				4854	682	3209	3253	4739	4739					-0.1811781432211319
CFFCVWQSY	9	Unmodified	_CFFCVWQSY_					0	0	0		ENST00000565867.2_1_16:48395883-48396060:+|nuORF	ENST00000565867.2_1_16:48395883-48396060:+|nuORF	ENST00000565867.2_1_16:48395883-48396060:+|nuORF	MSMS	A375_MHC_IP_R1	1	591.6396484375	2	591.740988	1181.46742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.78	1	101.78	101.28	102.28	0								0	0	0	0.15486	1	37402	37402		13.508	1.2672	1				4855	13553	3210	3254	4740	4740					-0.11605221088962026
CFLASCFY	8	Unmodified	_CFLASCFY_					0	0	0			REV__ENST00000360351.8_2_2:210595311-210595557:+|nuORF	REV__ENST00000360351.8_2_2:210595311-210595557:+|nuORF	MSMS	A375_MHC_IP_R2	2	477.1293640136719	2	477.198425	952.382296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.012	1	40.786	40.286	41.286	0.77451								0	0	0	0.16876	1	14799	14799		5.7604	0	1		+		4856	23888	3211	3255	4741	4741					-0.0957996655477018
CFSDEDENGY	10	Unmodified	_CFSDEDENGY_					0	0	0			REV__ENSG00000111667|ENST00000229268|USP5	REV__ENSG00000111667|ENST00000229268|USP5	MULTI-MSMS	A375_MHC_IP_R1	1	393.8709716796875	3	393.469604	1177.38698	0.14863	5.8482E-05	2.2204	0.00087365	2.369	0.00093213	393.4707697780437	97.464	0.45349	97.464	97.187	97.641	0					14	8	2	0	0	0	0.72335	1	35856	35856		0.77653	0.078866	1	1154600	+		4857	17683	3212	3256	4742	4742					-0.19461455668965755
CFSDEDENGY	10	Unmodified	_CFSDEDENGY_					0	0	0			REV__ENSG00000111667|ENST00000229268|USP5	REV__ENSG00000111667|ENST00000229268|USP5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	393.469604	1177.38698	0.14863	5.8482E-05	2.2204	0.00087365	2.369	0.00093213	393.4707697780437	97.464	0.45349	97.464	97.187	97.641	0	-0.069797	0.00013839	NaN	0.77653	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1154600	+		4858	17683	3212	3256							-0.19461455668965755
CFSDEDENGY	10	Unmodified	_CFSDEDENGY_					0	0	0			REV__ENSG00000111667|ENST00000229268|USP5	REV__ENSG00000111667|ENST00000229268|USP5	MULTI-MATCH	A375_MHC_IP_R2	2		3	393.469604	1177.38698	-0.33031	-0.00012997	1.9269	0.00075818	1.5966	0.00062821	393.4709784865505	96.847	0.65591	97.603	97.268	97.923	0.75587	0.069797	-0.00020802	NaN	0.77653	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	830110	+		4859	17683	3212	3256							-0.19461455668965755
CFSRQEREA	9	Unmodified	_CFSRQEREA_					0	0	0			REV__ENSG00000163873|ENST00000373091|GRIK3	REV__ENSG00000163873|ENST00000373091|GRIK3	MULTI-SECPEP	A375_MHC_IP_R1	1	563.1740112304688	2	563.258922	1124.50329	-0.40954	-0.00023068	-1.0184	-0.00057362	-1.4279	-0.0008043	563.2583189557902	77.613	0.4081	77.613	77.436	77.844	0					14	7	2	0	0	0	0.71341	1	28401	28401		18.146	2.2992	1	1284200	+		4860	20422	3213	3257	4743	4743					-0.05398047587732435
CFWLLIFF	8	Unmodified	_CFWLLIFF_					0	0	0		ENST00000526594.1_1_11:102033229-102056975:+|nuORF	ENST00000526594.1_1_11:102033229-102056975:+|nuORF	ENST00000526594.1_1_11:102033229-102056975:+|nuORF	MSMS	A375_MHC_IP_R2	2	363.58526611328125	3	363.526108	1087.5565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.319	1	53.072	52.572	53.572	0.75225								0	0	0	0.16876	1	19719	19719		7.9102	0	1				4861	13085	3214	3258	4744	4744					0.016219819328625817
CGCCCCCPCC	10	Unmodified	_CGCCCCCPCC_					0	0	0			REV__ENSG00000183307|ENST00000331437|TMEM121B	REV__ENSG00000183307|ENST00000331437|TMEM121B	MSMS	A375_MHC_IP_R2	2	499.1293029785156	2	499.086411	996.158268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.685	1	49.442	48.942	49.942	0.75737								0	0	0	0.15642	1	18283	18283		0	0	1		+		4862	21748	3215	3259	4745	4745					-0.33996471901889436
CGCCCCCPCC	10	Unmodified	_CGCCCCCPCC_					0	0	0			REV__ENSG00000183307|ENST00000331437|TMEM121B	REV__ENSG00000183307|ENST00000331437|TMEM121B	MSMS	A375_MHC_IP_R2	2	499.1591491699219	2	499.086411	996.158268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.903	1	50.657	50.157	51.157	0.75406								0	0	0	0.15642	1	18758	18758		0	0	1		+		4863	21748	3215	3259	4746	4746					-0.33996471901889436
CGCCCCCPCC	10	Unmodified	_CGCCCCCPCC_					0	0	0			REV__ENSG00000183307|ENST00000331437|TMEM121B	REV__ENSG00000183307|ENST00000331437|TMEM121B	MSMS	A375_MHC_IP_R2	2	499.1289978027344	2	499.086411	996.158268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.964	1	57.714	57.214	58.214	0.75015								0	0	0	0.15642	1	21536	21536		0	0	1		+		4864	21748	3215	3259	4747	4747					-0.33996471901889436
CGCCCCWWSG	10	Unmodified	_CGCCCCWWSG_					0	0	0		chr14:75847918-75863667|188|12.78|0.07|7.49|+|2|TE_info:MER5A,MER5A_dup27546,hAT-Charlie,DNA,donor,-,75847755,75847918|None,TTLL5|2	chr14:75847918-75863667|188|12.78|0.07|7.49|+|2|TE_info:MER5A,MER5A_dup27546,hAT-Charlie,DNA,donor,-,75847755,75847918|None,TTLL5|2	chr14:75847918-75863667|188|12.78|0.07|7.49|+|2|TE_info:MER5A,MER5A_dup27546,hAT-Charlie,DNA,donor,-,75847755,75847918|None,TTLL5|2	MSMS	A375_MHC_IP_R2	2	554.1806030273438	2	554.152311	1106.29007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.441	1	86.177	85.677	86.677	0.73601								0	0	0	0.15642	1	32482	32482		0	0	1				4865	435	3216	3260	4748	4748					-0.25882459226636456
CGCCCCWWSG	10	Unmodified	_CGCCCCWWSG_					0	0	0		chr14:75847918-75863667|188|12.78|0.07|7.49|+|2|TE_info:MER5A,MER5A_dup27546,hAT-Charlie,DNA,donor,-,75847755,75847918|None,TTLL5|2	chr14:75847918-75863667|188|12.78|0.07|7.49|+|2|TE_info:MER5A,MER5A_dup27546,hAT-Charlie,DNA,donor,-,75847755,75847918|None,TTLL5|2	chr14:75847918-75863667|188|12.78|0.07|7.49|+|2|TE_info:MER5A,MER5A_dup27546,hAT-Charlie,DNA,donor,-,75847755,75847918|None,TTLL5|2	MSMS	A375_MHC_IP_R2	2	554.1895141601562	2	554.152311	1106.29007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.547	1	86.283	85.783	86.783	0.73601								0	0	0	0.15642	1	32523	32523		0	0	1				4866	435	3216	3260	4749	4749					-0.25882459226636456
CGCEDYRC	8	Unmodified	_CGCEDYRC_					0	0	0		EXOSC7|p.R27C|1|0.28|ENSG00000075914|chr3:44989161-44989161|C/T|missense_variant	EXOSC7|p.R27C|1|0.28|ENSG00000075914|chr3:44989161-44989161|C/T|missense_variant	EXOSC7|p.R27C|1|0.28|ENSG00000075914|chr3:44989161-44989161|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	948.9609985351562	1	948.300834	947.293558	-0.15267	-0.00014477	0.27181	0.00025776	0.11915	0.00011299	948.3007613948505	120.55	0.30132	121.08	120.9	121.2	0.5321					6	5	2	0	0	0	0.972	1	46037	46037		8.5933	2.8329	1	9493000			4867	13964	3217	3261	4750	4750					-0.18219749856746148
CGCKRLPLYT	10	Unmodified	_CGCKRLPLYT_					0	0	0			REV__ENST00000599904.2_1_20:45947364-45947934:+|nuORF	REV__ENST00000599904.2_1_20:45947364-45947934:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	577.6964721679688	2	577.296462	1152.57837	-0.06872	-3.9672E-05	1.6831	0.00097164	1.6144	0.00093197	577.2970404428938	90.907	0.65773	91.641	91.261	91.919	0.7345					21	12	3	0	0	0	0.6502	1	34594	34594		17.113	17.113	1	3425800	+		4868	26498	3218	3262	4751	4751					0.00818418619132899
CGDGCCCPSCY	11	Unmodified	_CGDGCCCPSCY_					0	0	0		ENSG00000186965|ENST00000334055|KRTAP19-2	ENSG00000186965|ENST00000334055|KRTAP19-2	ENSG00000186965|ENST00000334055|KRTAP19-2	MSMS	A375_MHC_IP_R1	1	555.7030639648438	2	555.644516	1109.27448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.514	1	85.514	85.014	86.014	0								0	0	0	0.16353	1	31340	31340		0.35063	0.35063	1				4869	8793	3219	3263	4752	4752					-0.2757879053431225
CGEPSCLAH	9	Unmodified	_CGEPSCLAH_					0	0	0			REV__ENSG00000146648|ENST00000275493|EGFR	REV__ENSG00000146648|ENST00000275493|EGFR	MSMS	A375_MHC_IP_R2	2	458.6355895996094	2	458.686213	915.357872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.866	1	42.64	42.14	43.14	0.77451								0	0	0	0.15486	1	15555	15555		7.9102	0.62092	1		+		4870	19545	3220	3264	4753	4753					-0.10319226708304541
CGGGGCGY	8	Unmodified	_CGGGGCGY_					0	0	0			REV__ENSG00000138356|ENST00000374700|AOX1	REV__ENSG00000138356|ENST00000374700|AOX1	MULTI-SECPEP	A375_MHC_IP_R1	1	673.0081176757812	1	673.206857	672.199581	-0.64877	-0.00043675	-0.42108	-0.00028347	-1.0698	-0.00072023	673.2052398310542	99.421	0.25571	99.421	99.218	99.473	0					5	4	2	0	0	0	0.972	1	36522	36522		0	0	1	995460	+		4871	19088	3221	3265	4754	4754					-0.1496310089672761
CGIFAYLNY	9	Acetyl (Protein N-term),Carbamidomethyl (C)	_(Acetyl (Protein N-term))C(Carbamidomethyl (C))GIFAYLNY_	C(1)GIFAYLNY		C(54)GIFAYLNY		1	1	0		ENSG00000198380|ENST00000357308|GFPT1;nc|ENSG00000198380|Q06210-2|GFPT1;ENST00000494201.1_1_2:69598548-69614317:-|nuORF	ENSG00000198380|ENST00000357308|GFPT1	ENSG00000198380|ENST00000357308|GFPT1	MULTI-MSMS	A375_MHC_IP_R1	1	582.1668090820312	2	581.765517	1161.51648	-0.19426	-0.00011302	0.9857	0.00057345	0.79144	0.00046043	582.2671157163364	79.447	3	79.447	79.011	82.011	0					89	58	3	0	0	0	0.083809	1	29000	29000		53.576	21.27	1	6906900			4872	9261	3222	3266	4755	4755	46				-0.057816095283897084
CGKGMQTRQRM	11	Unmodified	_CGKGMQTRQRM_					0	0	0		SPON1|p.R635Q|1|0.4|ENSG00000262655|chr11:14260660-14260660|G/A|missense_variant	SPON1|p.R635Q|1|0.4|ENSG00000262655|chr11:14260660-14260660|G/A|missense_variant	SPON1|p.R635Q|1|0.4|ENSG00000262655|chr11:14260660-14260660|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	432.60919189453125	3	432.542498	1294.60566	-0.38441	-0.00016627	1.3031	0.00056367	0.91874	0.00039739	432.5438623844703	40.649	0.30589	41.423	41.234	41.54	0.77451					10	5	2	0	0	0	0.72964	1	15066	15066		9.2438	3.7205	1	1114900			4873	29237	3223	3267	4756	4756					-0.029854211121346452
CGNYCESDTCS	11	Unmodified	_CGNYCESDTCS_					0	0	0		tr|U7SXB0|U7SXB0_FUSNURecombinationproteinRecROS=FusobacteriumnucleatumCTI-5OX=1316586GN=recRPE=3SV=1	tr|U7SXB0|U7SXB0_FUSNURecombinationproteinRecROS=FusobacteriumnucleatumCTI-5OX=1316586GN=recRPE=3SV=1	tr|U7SXB0|U7SXB0_FUSNURecombinationproteinRecROS=FusobacteriumnucleatumCTI-5OX=1316586GN=recRPE=3SV=1	MSMS	A375_MHC_IP_R2	2	591.1638793945312	2	591.180831	1180.34711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.194	1	20.804	20.304	21.304	0.61029								0	0	0	0.16354	1	6266	6266		0.30703	0.03801	1				4874	29824	3224	3268	4757	4757					-0.2358504193553017
CGSLSLFLLVR	11	Unmodified	_CGSLSLFLLVR_					0	0	0			REV__nc|ENSG00000118564|Q9UKA1-2|FBXL5	REV__nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-MSMS	A375_MHC_IP_R2	2	403.6336669921875	3	403.233765	1206.67946	-0.30197	-0.00012177	-0.30657	-0.00012362	-0.60855	-0.00024539	403.23360452613804	61.416	0.80531	62.161	61.819	62.624	0.74504					30	15	3	0	0	0	0.72585	1	23266	23266		12.856	1.957	1	3226700	+		4875	18048	3225	3269	4758	4758					0.08439193593471828
CGVMRLVKF	9	Unmodified	_CGVMRLVKF_					0	0	0		tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1	tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1	tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	527.189697265625	2	526.790815	1051.56708	-0.55068	-0.00029009	-0.87667	-0.00046182	-1.4273	-0.00075191	526.7902195378583	34.532	0.30401	34.532	34.353	34.657	0					9	5	2	0	0	0	0.67483	1	11405	11405		14.838	0	1	3068200			4876	29776	3226	3270	4759	4759					0.04335641315651628
CGYGSGCGCGY	11	Unmodified	_CGYGSGCGCGY_					0	0	0		ENSG00000187005|ENST00000335093|KRTAP21-1	ENSG00000187005|ENST00000335093|KRTAP21-1	ENSG00000187005|ENST00000335093|KRTAP21-1	MSMS	A375_MHC_IP_R1	1	513.6609497070312	2	513.659338	1025.30412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.679	1	83.679	83.179	84.179	0								0	0	0	0.16331	1	30626	30626		1.4819	0	1				4877	8799	3227	3271	4760	4760					-0.2075176720231866
CHAREEAF	8	Unmodified	_CHAREEAF_					0	0	0			REV__ENST00000482165.1_1_10:1169988-1170211:+|nuORF	REV__ENST00000482165.1_1_10:1169988-1170211:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	481.13507080078125	2	481.711076	961.4076	-0.42522	-0.00020483	0.0055558	2.6763E-06	-0.41967	-0.00020216	481.71093607651085	46.52	0.35077	46.52	46.245	46.596	0					10	6	2	0	0	0	0.972	1	16354	16354		8.5933	0	1	1592600	+		4878	25276	3228	3272	4761	4761					-0.07464775707978788
CHARYNEY	8	Unmodified	_CHARYNEY_					0	0	0			REV__ENSG00000184702|ENST00000455784|SEPTIN5	REV__ENSG00000184702|ENST00000455784|SEPTIN5	MSMS	A375_MHC_IP_R2	2	528.1653442382812	2	528.221808	1054.42906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.906	1	47.667	47.167	48.167	0.76128								0	0	0	0.16876	1	17577	17577		14.838	5.4908	1		+		4879	21834	3229	3273	4762	4762					-0.09597390679255113
CHCRETQV	8	Unmodified	_CHCRETQV_					0	0	0			REV__nc|ENSG00000114251|P41221-2|WNT5A	REV__nc|ENSG00000114251|P41221-2|WNT5A	MSMS	A375_MHC_IP_R1	1	488.183349609375	2	488.210386	974.40622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.394	1	81.394	80.894	81.894	0								0	0	0	0.16876	1	29743	29743		13.508	1.8676	1		+		4880	17817	3230	3274	4763	4763					-0.0820073306838367
CHDQNCCYTTT	11	Unmodified	_CHDQNCCYTTT_					0	0	0			REV__nc|ENSG00000106799|P36897-3|TGFBR1	REV__nc|ENSG00000106799|P36897-3|TGFBR1	MSMS	A375_MHC_IP_R2	2	644.760009765625	2	644.723197	1287.43184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.38	1	132.57	132.07	133.07	0.18953								0	0	0	0.16334	1	52076	52076		1.3295	0	1		+		4881	17466	3231	3275	4764	4764					-0.20037671398949897
CHEDTCNCNL	10	Unmodified	_CHEDTCNCNL_					0	0	0		OTOGL|p.Q1836Sfs*45|1|0.64|ENSG00000165899|chr12:80353484-80353484|C/-|frameshift_variant;ENSG00000165899|ENST00000547103|OTOGL	OTOGL|p.Q1836Sfs*45|1|0.64|ENSG00000165899|chr12:80353484-80353484|C/-|frameshift_variant	OTOGL|p.Q1836Sfs*45|1|0.64|ENSG00000165899|chr12:80353484-80353484|C/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	576.18603515625	2	576.199358	1150.38416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.922	1	90.654	90.154	91.154	0.7318								0	0	0	0.15332	1	34214	34214		10.074	6.1295	1				4882	7000	3232	3276	4765	4765					-0.1850132559911799
CHEPCFLSQN	10	Unmodified	_CHEPCFLSQN_					0	0	0		ENST00000367634.6_1_1:178885614-178885728:+|nuORF	ENST00000367634.6_1_1:178885614-178885728:+|nuORF	ENST00000367634.6_1_1:178885614-178885728:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	590.1428833007812	2	589.241883	1176.46921	-0.74017	-0.00043614	0.91429	0.00053874	0.17412	0.0001026	589.2423220853619	62.125	1.7194	62.867	62.118	63.838	0.74263					54	33	3	0	0	0	0.69306	2	23558	23558;23563		13.906	1.6654	1	1787900			4883	11098	3233	3277	4766;4767	4766					-0.11196212070990441
CHGCCCNCCCC	11	Unmodified	_CHGCCCNCCCC_					0	0	0			REV__ENSG00000147570|ENST00000276570|DNAJC5B	REV__ENSG00000147570|ENST00000276570|DNAJC5B	MSMS	A375_MHC_IP_R1	1	576.1409912109375	2	576.110948	1150.20734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.24	1	100.24	99.738	100.74	0								0	0	0	0.1636	1	36841	36841		0	0	1		+		4884	19595	3234	3278	4768	4768					-0.36175183612931505
CHGGGSCK	8	Unmodified	_CHGGGSCK_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-SECPEP	A375_MHC_IP_R2	2	748.572021484375	1	748.286505	747.279228	-0.85163	-0.00063726	-2.8945	-0.0021659	-3.7461	-0.0028032	748.2814070822932	123.87	0.30507	124.2	123.99	124.29	0.32969					7	5	2	0	0	0	0.972	1	47632	47632		0	0	1	14173000			4885	5564	3235	3279	4769	4769					-0.10452034222714701
CHGLDSTSGML	11	Unmodified	_CHGLDSTSGML_					0	0	0			REV__ENST00000517543.1_1_8:4645561-4645723:+|nuORF	REV__ENST00000517543.1_1_8:4645561-4645723:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	374.4332580566406	3	374.16357	1119.46888	0.4298	0.00016081	4.2241	0.0015805	4.6539	0.0017413	374.16563648828196	42.659	0.20348	43.432	43.319	43.523	0.7724					5	3	2	0	0	0	0.7359	1	15834	15834		1.3296	0.21989	1	623740	+		4886	18442	3236	3280	4770	4770					-0.08607631790823689
CHGTDAAT	8	Unmodified	_CHGTDAAT_					0	0	0			REV__ENST00000535641.5_1_12:121765331-121765427:-|nuORF	REV__ENST00000535641.5_1_12:121765331-121765427:-|nuORF	MSMS	A375_MHC_IP_R2	2	388.2421875	2	388.155603	774.296652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.779	1	19.382	18.882	19.882	0.60308								0	0	0	0.16876	1	5604	5604		0.79363	0	1		+		4887	25906	3237	3281	4771	4771					-0.09952415416080385
CHHFGHRRSE	10	Unmodified	_CHHFGHRRSE_					0	0	0			REV__ENST00000217909.7_1_X:118540464-118544252:+|nuORF	REV__ENST00000217909.7_1_X:118540464-118544252:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	633.6881713867188	2	633.288879	1264.56321	-0.79475	-0.00050331	-0.26056	-0.00016501	-1.0553	-0.00066832	633.2886195994237	77.883	0.51238	78.626	78.365	78.878	0.74293					22	9	3	0	0	0	0.66308	1	29591	29591		16.149	0.90062	1	3166800	+		4888	23041	3238	3282	4772	4772					-0.05849312133841522
CHHHSMTTVYY	11	Unmodified	_CHHHSMTTVYY_					0	0	0			REV__OR1L8|p.H132Y|1|0.38|ENSG00000171496|chr9:122568084-122568084|G/A|missense_variant	REV__OR1L8|p.H132Y|1|0.38|ENSG00000171496|chr9:122568084-122568084|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	689.7845458984375	2	689.786989	1377.55943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.112	1	79.857	79.357	80.357	0.74474								0	0	0	0.1624	1	30022	30022		6.2058	2.2614	1		+		4889	27657	3239	3283	4773	4773					-0.11425162742580142
CHKCHRPTL	9	Unmodified	_CHKCHRPTL_					0	0	0			REV__nc|ENSG00000174038|Q5VYM1-3|SPATA31G1	REV__nc|ENSG00000174038|Q5VYM1-3|SPATA31G1	MULTI-SECPEP	A375_MHC_IP_R1	1	548.1708984375	2	547.770945	1093.52734	-0.84793	-0.00046447	0.42744	0.00023414	-0.42048	-0.00023033	547.7712513819923	23.508	0.25457	23.508	23.381	23.635	0					10	4	3	0	0	0	0.50702	1	6494	6494		25.399	25.399	1	13090000	+		4890	21261	3240	3284	4774	4774					-0.015684856350617338
CHLAPSWMP	9	Unmodified	_CHLAPSWMP_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;ENST00000488988.5_1_3:52422617-52433783:+|nuORF;ENST00000486752.5_1_3:52422617-52434459:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-MSMS	A375_MHC_IP_R2	2	520.6553344726562	2	521.235873	1040.45719	-0.74484	-0.00038824	-1.0055	-0.00052408	-1.7503	-0.00091232	521.2352034290307	44.773	0.56174	45.542	45.239	45.8	0.7691					18	10	2	0	0	0	0.6898	1	16661	16661		7.9102	7.9102	1	3128400			4891	3248	3241	3285	4775	4775					-0.061417840235435506
CHLAPSWMP	9	Unmodified	_CHLAPSWMP_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;ENST00000488988.5_1_3:52422617-52433783:+|nuORF;ENST00000486752.5_1_3:52422617-52434459:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	521.235873	1040.45719	-0.74484	-0.00038824	-1.0055	-0.00052408	-1.7503	-0.00091232	521.2352034290307	44.773	0.56174	45.542	45.239	45.8	0.7691	-0.037169	5.9995E-05	NaN	7.9102	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3128400			4892	3248	3241	3285							-0.061417840235435506
CHLMWAGSWV	10	Unmodified	_CHLMWAGSWV_					0	0	0			REV__ENST00000394906.6_1_17:27206381-27206507:-|nuORF	REV__ENST00000394906.6_1_17:27206381-27206507:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	595.6686401367188	2	595.267704	1188.52086	-0.46857	-0.00027892	2.0552	0.0012234	1.5866	0.00094445	595.2688452952244	84.358	0.6075	85.094	84.865	85.472	0.73601					20	11	2	0	0	0	0.9269	1	32093	32093		6.7232	1.4263	1	2224600	+		4893	24312	3242	3286	4776	4776					-0.06586423586463752
CHLMWAGSWV	10	Unmodified	_CHLMWAGSWV_					0	0	0			REV__ENST00000394906.6_1_17:27206381-27206507:-|nuORF	REV__ENST00000394906.6_1_17:27206381-27206507:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	595.267704	1188.52086	-0.59134	-0.000352	0.82916	0.00049357	0.23782	0.00014157	595.2680859673471	84.9	0.51203	84.9	84.749	85.261	0	-0.09743	-0.0012554	NaN	6.7232	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2500900	+		4894	24312	3242	3286							-0.06586423586463752
CHMYWMSPWK	10	Unmodified	_CHMYWMSPWK_					0	0	0			REV__ENSG00000099139|ENST00000674117|PCSK5	REV__ENSG00000099139|ENST00000674117|PCSK5	MSMS	A375_MHC_IP_R1	1	684.842529296875	2	684.787946	1367.56134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.57	1	114.57	114.07	115.07	0								0	0	0	0.15596	1	42017	42017		1.4819	0.15237	1		+		4895	17011	3243	3287	4777	4777					-0.10773825258343095
CHPELPDGEY	10	Unmodified	_CHPELPDGEY_					0	0	0		nc|ENSG00000204248|P13942-8|COL11A2;nc|ENSG00000204248|P13942-6|COL11A2;chr6:33185054-33186627|320|24.09|0.77|4.96|-|ENST00000374708|COL11A2,COL11A2;nc|ENSG00000204248|P13942-7|COL11A2;nc|ENSG00000204248|P13942-4|COL11A2;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2;ENST00000477772.1_1_6:33131457-33145620:-|nuORF	nc|ENSG00000204248|P13942-8|COL11A2	nc|ENSG00000204248|P13942-8|COL11A2	MSMS	A375_MHC_IP_R1	1	580.2183837890625	2	580.239864	1158.46517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.19	1	107.19	106.69	107.69	0								0	0	0	0.15308	1	39336	39336		10.824	4.1008	1				4896	494	3244	3288	4778	4778					-0.10771978293064421
CHPSKGTCF	9	Unmodified	_CHPSKGTCF_					0	0	0			REV__ENST00000517951.5_1_5:156822576-156936463:-|nuORF	REV__ENST00000517951.5_1_5:156822576-156936463:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	490.60919189453125	2	490.209855	978.405157	-0.44525	-0.00021826	-0.64862	-0.00031796	-1.0939	-0.00053623	490.20973414716025	46.329	1.0624	47.095	46.353	47.416	0.76518					33	20	3	0	0	0	0.73363	1	17327	17327		10.824	10.824	1	5426900	+		4897	18821	3245	3289	4779	4779					-0.08490947437292107
CHPSKGTCF	9	Unmodified	_CHPSKGTCF_					0	0	0			REV__ENST00000517951.5_1_5:156822576-156936463:-|nuORF	REV__ENST00000517951.5_1_5:156822576-156936463:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	490.209855	978.405157	-0.45377	-0.00022244	-0.65168	-0.00031946	-1.1054	-0.0005419	490.20952733271713	46.895	1.0206	46.895	46.345	47.366	0	-0.099556	-1.1778E-06	NaN	10.824	31	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4814700	+		4898	18821	3245	3289							-0.08490947437292107
CHRLTRVT	8	Unmodified	_CHRLTRVT_					0	0	0			REV__ENSG00000136237|ENST00000665637|RAPGEF5	REV__ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-MSMS	A375_MHC_IP_R1	1	493.6692199707031	2	493.271635	984.528718	-0.69923	-0.00034491	-4.1863	-0.002065	-4.8855	-0.0024099	493.2694223863408	143.22	0.15228	143.22	143.14	143.29	0					4	2	2	0	0	0	0.7773	1	54966	54966		4.756	0	1	2361400	+		4899	18923	3246	3290	4780	4780					0.035834717253237613
CHRLTRVT	8	Unmodified	_CHRLTRVT_					0	0	0			REV__ENSG00000136237|ENST00000665637|RAPGEF5	REV__ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	493.271635	984.528718	-0.69923	-0.00034491	-4.1863	-0.002065	-4.8855	-0.0024099	493.2694223863408	143.22	0.15228	143.22	143.14	143.29	0	-0.021646	-0.0011756	NaN	4.756	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2361400	+		4900	18923	3246	3290							0.035834717253237613
CHRQMQQQA	9	Unmodified	_CHRQMQQQA_					0	0	0		ENST00000590499.1_1_18:48593389-48603623:+|nuORF;ENSG00000141646|ENST00000342988|SMAD4	ENST00000590499.1_1_18:48593389-48603623:+|nuORF	ENST00000590499.1_1_18:48593389-48603623:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	377.5711364746094	3	377.17117	1128.49168	0.088724	3.3464E-05	-0.07023	-2.6489E-05	0.018494	6.9752E-06	377.1711384478793	23.915	0.20359	23.915	23.838	24.042	0					6	3	2	0	0	0	0.775	1	6703	6703		4.1895	0.24511	1	3761000			4901	5265	3247	3291	4781	4781					-0.06742567882702133
CHWTLLSV	8	Unmodified	_CHWTLLSV_					0	0	0		ENST00000524739.1_1_11:134129171-134129964:+|nuORF;ENST00000527082.5_1_11:134129171-134129738:+|nuORF	ENST00000524739.1_1_11:134129171-134129964:+|nuORF	ENST00000524739.1_1_11:134129171-134129964:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	480.1816711425781	2	479.744388	957.474223	-0.064346	-3.0869E-05	1.4795	0.0007098	1.4152	0.00067893	479.7453379664718	48.342	0.35355	48.342	48.173	48.526	0					11	6	2	0	0	0	0.75322	1	16993	16993		19.439	3.2899	1	1197500			4902	13060	3248	3292	4782	4782					-0.006215401460735848
CIKWRRRRRRR	11	Unmodified	_CIKWRRRRRRR_					0	0	0		ENST00000303961.8_1_19:41306371-41306464:+|nuORF	ENST00000303961.8_1_19:41306371-41306464:+|nuORF	ENST00000303961.8_1_19:41306371-41306464:+|nuORF	MSMS	A375_MHC_IP_R2	2	821.8444213867188	2	821.50021	1640.98587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.32	1	125.62	125.12	126.12	0.2951								0	0	0	0.1636	1	48817	48817		0	0	1				4903	10557	3249	3293	4783	4783					0.19101281389612268
CIPDSSGAA	9	Unmodified	_CIPDSSGAA_					0	0	0			REV__ENSG00000223601|ENST00000422359|EBLN1	REV__ENSG00000223601|ENST00000422359|EBLN1	MULTI-MSMS	A375_MHC_IP_R1	1	410.5796203613281	2	410.678911	819.343268	0.37466	0.00015387	-1.0603	-0.00043544	-0.68562	-0.00028157	410.67884040745656	112.51	0.61317	112.51	112.18	112.79	0					16	11	3	0	0	0	0.72985	1	41290	41290		4.3292	0	1	3507200	+		4904	22702	3250	3294	4784	4784					-0.07362975584783271
CIQSFKSFNC	10	Unmodified	_CIQSFKSFNC_					0	0	0		nc|ENSG00000204604|Q5VIY5-2|ZNF468;ENSG00000204604|ENST00000595646|ZNF468	nc|ENSG00000204604|Q5VIY5-2|ZNF468	nc|ENSG00000204604|Q5VIY5-2|ZNF468	MULTI-MSMS	A375_MHC_IP_R1	1	588.6723022460938	2	588.762452	1175.51035	0.046445	2.7345E-05	-1.1223	-0.00066079	-1.0759	-0.00063345	588.7617431883779	48.292	0.50621	48.292	48.071	48.577	0					17	9	3	0	0	0	0.59037	1	16938	16938		21.59	3.4552	1	3337500			4905	9465	3251	3295	4785	4785					-0.07038451031507975
CIQSFKSFNC	10	Unmodified	_CIQSFKSFNC_					0	0	0		nc|ENSG00000204604|Q5VIY5-2|ZNF468;ENSG00000204604|ENST00000595646|ZNF468	nc|ENSG00000204604|Q5VIY5-2|ZNF468	nc|ENSG00000204604|Q5VIY5-2|ZNF468	MSMS	A375_MHC_IP_R2	2	588.6723022460938	2	588.762452	1175.51035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.421	1	48.183	47.683	48.683	0.76128								0	0	0	0.14504	1	17781	17781		27.223	5.6863	1				4906	9465	3251	3295	4786	4786					-0.07038451031507975
CIRCLRPIW	9	Unmodified	_CIRCLRPIW_					0	0	0		ENST00000439871.1_1_2:218925303-218925771:-|nuORF	ENST00000439871.1_1_2:218925303-218925771:-|nuORF	ENST00000439871.1_1_2:218925303-218925771:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	579.8135986328125	2	580.314989	1158.61542	-0.18185	-0.00010553	-0.85557	-0.0004965	-1.0374	-0.00060203	580.3143765556994	100.55	0.55882	100.55	100.23	100.79	0					26	10	3	0	0	0	0.74651	1	36948	36948		13.508	12.315	1	4831600			4907	11966	3252	3296	4787	4787					0.04246134955542402
CIWCNSLHNGS	11	Unmodified	_CIWCNSLHNGS_					0	0	0			REV__ENSG00000269526|ENST00000602168|ERVV-1	REV__ENSG00000269526|ENST00000602168|ERVV-1	MULTI-MSMS	A375_MHC_IP_R1	1	617.6609497070312	2	617.260607	1232.50666	-0.51728	-0.00031929	0.44887	0.00027707	-0.068411	-4.2227E-05	617.260912137599	66.135	0.5572	66.135	65.921	66.478	0					18	10	2	0	0	0	0.73078	1	23959	23959		8.1555	0.24537	1	2688200	+		4908	22934	3253	3297	4788	4788					-0.1002912080537044
CIYTEQMYIWF	11	Unmodified	_CIYTEQMYIWF_					0	0	0			REV__ENST00000423427.1_2_3:173114104-173322101:+|nuORF	REV__ENST00000423427.1_2_3:173114104-173322101:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	749.2313842773438	2	748.833074	1495.65159	-0.80555	-0.00060322	-0.66738	-0.00049976	-1.4729	-0.001103	748.8321230257444	78.617	0.45675	79.362	79.185	79.642	0.74474					22	8	4	0	0	0	0.73795	1	29867	29867		1.3295	0	1	5759300	+		4909	24614	3254	3298	4789	4789					-0.07640497448937822
CKACSWTTF	9	Unmodified	_CKACSWTTF_					0	0	0			REV__ENSG00000103326|ENST00000219611|CAPN15	REV__ENSG00000103326|ENST00000219611|CAPN15	MSMS	A375_MHC_IP_R2	2	523.6633911132812	2	523.725338	1045.43612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.082	1	60.829	60.329	61.329	0.74714								0	0	0	0.15486	1	22740	22740		12.532	0	1		+		4910	17271	3255	3299	4790	4790					-0.08477794123064086
CKCTGDTLLY	10	Unmodified	_CKCTGDTLLY_					0	0	0			REV__ENSG00000204406|ENST00000642680|MBD5	REV__ENSG00000204406|ENST00000642680|MBD5	MULTI-MSMS	A375_MHC_IP_R1	1	559.15673828125	2	558.756835	1115.49912	-0.66019	-0.00036889	-0.47093	-0.00026313	-1.1311	-0.00063202	558.756954185002	46.935	0.76655	46.935	46.444	47.211	0					31	14	3	0	0	0	0.57505	1	16479	16479		22.736	0	1	7314300	+		4911	22513	3256	3300	4791	4791					-0.05401273125653461
CKCTGDTLLY	10	Unmodified	_CKCTGDTLLY_					0	0	0			REV__ENSG00000204406|ENST00000642680|MBD5	REV__ENSG00000204406|ENST00000642680|MBD5	MULTI-MATCH	A375_MHC_IP_R2	2		2	558.756835	1115.49912	-0.62879	-0.00035134	-0.6544	-0.00036565	-1.2832	-0.00071699	558.7568049576375	46.15	0.65611	46.915	46.503	47.159	0.76519	-0.010054	-0.00010037	NaN	22.736	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5829900	+		4912	22513	3256	3300							-0.05401273125653461
CKFLYFDY	8	Unmodified	_CKFLYFDY_					0	0	0			REV__ENSG00000198218|ENST00000395443|QRICH1	REV__ENSG00000198218|ENST00000395443|QRICH1	MSMS	A375_MHC_IP_R2	2	549.648193359375	2	549.751879	1097.4892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.372	1	44.145	43.645	44.645	0.7724								0	0	0	0.16876	1	16158	16158		13.508	1.8676	1		+		4913	22354	3257	3301	4792	4792					-0.055640930687332
CKFPLKDSHSQ	11	Unmodified	_CKFPLKDSHSQ_					0	0	0			REV__ENSG00000198795|ENST00000361524|ZNF521	REV__ENSG00000198795|ENST00000361524|ZNF521	MSMS	A375_MHC_IP_R2	2	430.6058349609375	3	430.548412	1288.62341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.341	1	19.944	19.444	20.444	0.60308								0	0	0	0.16209	1	5933	5933		7.846	0.36898	1		+		4914	22421	3258	3302	4793	4793					-0.009360593139717821
CKGDEMFYGE	10	Unmodified	_CKGDEMFYGE_					0	0	0			REV__PCSK5|p.R813K|1|0.31|ENSG00000099139|chr9:76189151-76189151|G/A|missense_variant	REV__PCSK5|p.R813K|1|0.31|ENSG00000099139|chr9:76189151-76189151|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	393.55377197265625	3	393.487942	1177.442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.12	1	77.12	76.62	77.62	0								0	0	0	0.15158	1	28129	28129		8.9762	6.5415	1		+		4915	27748	3259	3303	4794	4794					-0.1396274040203025
CKHPVCIW	8	Unmodified	_CKHPVCIW_					0	0	0		ENST00000356836.10_1_1:44446063-44446210:+|nuORF	ENST00000356836.10_1_1:44446063-44446210:+|nuORF	ENST00000356836.10_1_1:44446063-44446210:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	493.7054748535156	2	493.240958	984.467363	-0.12493	-6.1619E-05	0.35346	0.00017434	0.22853	0.00011272	493.24099050027434	111.78	0.55971	111.78	111.52	112.08	0					18	10	2	0	0	0	0.77603	1	41034	41034		9.3474	9.3474	1	2063500			4916	10971	3260	3304	4795	4795					-0.025491762983165245
CKILEQRL	8	Unmodified	_CKILEQRL_					0	0	0		ENST00000554270.5_1_14:88936247-89016761:-|nuORF;ENSG00000070778|ENST00000556564|PTPN21	ENST00000554270.5_1_14:88936247-89016761:-|nuORF	ENST00000554270.5_1_14:88936247-89016761:-|nuORF	MSMS	A375_MHC_IP_R1	1	501.6903991699219	2	501.791869	1001.56919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.99	1	111.99	111.49	112.49	0								0	0	0	0.16876	1	41051	41051		3.5965	0	1				4917	1501	3261	3305	4796	4796					0.06846393325110967
CKNASHIEEEK	11	Unmodified	_CKNASHIEEEK_					0	0	0			REV__nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L	REV__nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L	MSMS	A375_MHC_IP_R1	1	644.2329711914062	2	644.303526	1286.5925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.769	1	42.769	42.269	43.269	0								0	0	0	0.12828	1	14836	14836		29.841	3.5724	1		+		4918	16645	3262	3306	4797	4797					-0.039332574189074876
CKVFRKTRKRW	11	Unmodified	_CKVFRKTRKRW_					0	0	0		ENST00000476966.5_1_1:156383609-156383882:-|nuORF	ENST00000476966.5_1_1:156383609-156383882:-|nuORF	ENST00000476966.5_1_1:156383609-156383882:-|nuORF	MSMS	A375_MHC_IP_R2	2	754.3338012695312	2	754.443172	1506.87179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.668	1	90.4	89.9	90.9	0.7318								0	0	0	0.16354	1	34120	34120		0.30703	0	1				4919	12435	3263	3307	4798	4798					0.13862953784155252
CKYSREENHIR	11	Unmodified	_CKYSREENHIR_					0	0	0			REV__ENSG00000197385|ENST00000360311|ZNF860	REV__ENSG00000197385|ENST00000360311|ZNF860	MULTI-SECPEP	A375_MHC_IP_R2	2	358.9246826171875	4	359.428122	1433.68338	-0.50772	-0.00018249	-0.33385	-0.00011999	-0.84156	-0.00030248	359.4279494783762	23.374	0.25102	24.005	23.878	24.129	0.63014					8	4	2	0	0	0	0.99581	1	7472	7472		3.5927	2.4829	1	5858200	+		4920	22283	3264	3308	4799	4799					-0.016113686507651437
CKYSVPLDQC	10	Unmodified	_CKYSVPLDQC_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B	REV__ENSG00000168702|ENST00000389484|LRP1B	MULTI-MSMS	A375_MHC_IP_R1	1	577.6774291992188	2	578.262284	1154.51002	-0.18042	-0.00010433	-1.4265	-0.00082487	-1.6069	-0.0009292	578.2613820150066	25.008	0.70964	25.008	24.852	25.562	0					23	13	2	0	0	0	0.56097	1	7309	7309		23.79	1.0535	1	10153000	+		4921	20879	3265	3309	4800	4800					-0.06105870751389375
CLCVWNVPPW	10	Unmodified	_CLCVWNVPPW_					0	0	0		ENST00000274712.7_1_5:140083564-140084067:+|nuORF	ENST00000274712.7_1_5:140083564-140084067:+|nuORF	ENST00000274712.7_1_5:140083564-140084067:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	406.3033752441406	3	406.192912	1215.55691	-0.41346	-0.00016795	-1.4403	-0.00058504	-1.8538	-0.00075298	406.19225745015666	28.223	0.65643	28.223	27.987	28.643	0					17	12	2	0	0	0	0.94421	1	8686	8686		0.69767	0.69767	1	2414400			4922	10401	3266	3310	4801	4801					-0.042249664095834305
CLDKRPLERSS	11	Unmodified	_CLDKRPLERSS_					0	0	0		ENSG00000091428|ENST00000397081|RAPGEF4	ENSG00000091428|ENST00000397081|RAPGEF4	ENSG00000091428|ENST00000397081|RAPGEF4	MULTI-MSMS	A375_MHC_IP_R1	1	652.7430419921875	2	652.342986	1302.67142	-0.59761	-0.00038984	0.74352	0.00048503	0.14592	9.5187E-05	652.3433214674511	129.87	0.96526	129.87	129.4	130.36	0					27	18	3	0	0	0	0.72494	1	49975	49975		13.615	4.8695	1	5668900			4923	1977	3267	3311	4802	4802					0.032190146060656843
CLDKRPLERSS	11	Unmodified	_CLDKRPLERSS_					0	0	0		ENSG00000091428|ENST00000397081|RAPGEF4	ENSG00000091428|ENST00000397081|RAPGEF4	ENSG00000091428|ENST00000397081|RAPGEF4	MULTI-MSMS	A375_MHC_IP_R2	2	652.7425537109375	2	652.342986	1302.67142	-0.78114	-0.00050957	-0.1295	-8.448E-05	-0.91064	-0.00059405	652.343012317818	130.77	1.3232	130.99	130.55	131.87	0.2142					60	25	3	0	0	0	0.72932	2	51462	51384;51462		9.544	2.4423	1	13745000			4924	1977	3267	3311	4803;4804	4804					0.032190146060656843
CLDLRGVCRT	10	Unmodified	_CLDLRGVCRT_					0	0	0		nc|ENSG00000168546|O00451-2|GFRA2;nc|ENSG00000168546|O00451-3|GFRA2;ENSG00000168546|ENST00000524240|GFRA2;ENST00000306793.4_1_8:21550792-21640469:-|nuORF	nc|ENSG00000168546|O00451-2|GFRA2	nc|ENSG00000168546|O00451-2|GFRA2	MSMS	A375_MHC_IP_R1	1	379.16217041015625	3	379.195204	1134.56378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.531	1	95.531	95.031	96.031	0								0	0	0	0.15531	1	35113	35113		1.7423	0.14999	1				4925	7318	3268	3312	4805	4805					0.001883464709862892
CLDPYYCNKF	10	Unmodified	_CLDPYYCNKF_					0	0	0		ENSG00000198846|ENST00000361421|TOX	ENSG00000198846|ENST00000361421|TOX	ENSG00000198846|ENST00000361421|TOX	MSMS	A375_MHC_IP_R2	2	633.1220703125	2	633.270109	1264.52567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.75	1	69.485	68.985	69.985	0.73511								0	0	0	0.15417	1	26052	26052		7.2892	1.0834	1				4926	9348	3269	3313	4806	4806					-0.09601584234383154
CLESYDDSDS	10	Unmodified	_CLESYDDSDS_					0	0	0			REV__ZNF839|p.F398Sfs*36|1|0.24|ENSG00000022976|chr14:102335715-102335715|T/-|frameshift_variant	REV__ZNF839|p.F398Sfs*36|1|0.24|ENSG00000022976|chr14:102335715-102335715|T/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	567.170654296875	2	567.200601	1132.38665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.141	1	47.903	47.403	48.403	0.76128								0	0	0	0.15158	1	17670	17670		14.838	10.509	1		+		4927	16273	3270	3314	4807	4807					-0.17424875388815053
CLGQLCPRRL	10	Unmodified	_CLGQLCPRRL_					0	0	0			REV__ENST00000359534.3_1_6:39158079-39158430:-|nuORF	REV__ENST00000359534.3_1_6:39158079-39158430:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	386.1478576660156	3	386.879327	1157.61615	0.61108	0.00023641	1.7549	0.00067894	2.366	0.00091536	386.880230660473	48.431	0.60744	48.431	48.122	48.729	0					17	11	2	0	0	0	0.93406	1	17101	17101		9.544	1.3884	1	2189900	+		4928	23877	3271	3315	4808	4808					0.04364929604594181
CLGQLCPRRL	10	Unmodified	_CLGQLCPRRL_					0	0	0			REV__ENST00000359534.3_1_6:39158079-39158430:-|nuORF	REV__ENST00000359534.3_1_6:39158079-39158430:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	386.879327	1157.61615	-0.02373	-9.1807E-06	1.7092	0.00066127	1.6855	0.00065208	386.88050479773966	47.868	0.35105	48.629	48.532	48.883	0.76127	0.098791	-3.7835E-05	NaN	9.544	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	751060	+		4929	23877	3271	3315							0.04364929604594181
CLHRSGLV	8	Unmodified	_CLHRSGLV_					0	0	0			REV__ENST00000560010.1_1_15:96833853-96870526:-|nuORF	REV__ENST00000560010.1_1_15:96833853-96870526:-|nuORF	MSMS	A375_MHC_IP_R2	2	442.640869140625	2	442.742179	883.469806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.33	1	107.09	106.59	107.59	0.75977								0	0	0	0.16876	1	40192	40192		7.9102	0	1		+		4930	25495	3272	3316	4809	4809					0.02340995431029569
CLKTEFFKRYY	11	Unmodified	_CLKTEFFKRYY_					0	0	0			REV__nc|ENSG00000163714|O15042-3|U2SURP	REV__nc|ENSG00000163714|O15042-3|U2SURP	MULTI-MSMS	A375_MHC_IP_R1	1	749.6942749023438	2	749.38158	1496.74861	-0.27378	-0.00020517	1.2682	0.00095039	0.99445	0.00074522	749.3818669379627	107.65	0.3573	107.65	107.49	107.85	0					9	6	2	0	0	0	0.73016	1	39515	39515		8.7454	3.0136	1	1334100	+		4931	20403	3273	3317	4810	4810					0.020102328224083976
CLMDVLIEY	9	Unmodified	_CLMDVLIEY_					0	0	0			REV__PSMA6|p.P110L|1|0.17|ENSG00000100902|chr14:35310815-35310815|C/T|missense_variant	REV__PSMA6|p.P110L|1|0.17|ENSG00000100902|chr14:35310815-35310815|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	549.1760864257812	2	549.764129	1097.5137	-0.43761	-0.00024058	-0.84361	-0.00046378	-1.2812	-0.00070436	549.7639345004179	56.269	0.80999	56.269	55.738	56.548	0					20	15	2	0	0	0	0.71541	1	19980	19980		16.942	1.0951	1	1751800	+		4932	27850	3274	3318	4811	4811					-0.031152009775269107
CLMQIDVTY	9	Unmodified	_CLMQIDVTY_					0	0	0		nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;ENSG00000160111|ENST00000443236|CPAMD8	nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	MULTI-MSMS	A375_MHC_IP_R1	1	544.716064453125	2	543.253928	1084.4933	-0.61855	-0.00033603	-1.951	-0.0010599	-2.5695	-0.0013959	543.7551438307703	46.414	1.5768	46.414	45.89	47.467	0					82	30	4	0	0	0	0.58047	1	16388	16388		15.847	1.0089	1	41742000			4933	6397	3275	3319	4812	4812					-0.045563716373180796
CLMRLAKLK	9	Unmodified	_CLMRLAKLK_					0	0	0		nc|ENSG00000165475|Q9Y2S2-2|CRYL1;ENSG00000165475|ENST00000298248|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	MULTI-SECPEP	A375_MHC_IP_R1	1	538.7266845703125	2	538.327565	1074.64058	-0.9346	-0.00050312	-0.57331	-0.00030863	-1.5079	-0.00081175	538.3271191169399	133.58	1.4717	133.58	133.25	134.73	0					72	28	5	0	0	0	0.80332	1	51502	51502		4.3292	4.3292	1	67550000			4934	6956	3276	3320	4813	4813					0.10624189758118519
CLMRLAKLK	9	Unmodified	_CLMRLAKLK_					0	0	0		nc|ENSG00000165475|Q9Y2S2-2|CRYL1;ENSG00000165475|ENST00000298248|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	538.327565	1074.64058	-0.78368	-0.00042187	-0.50961	-0.00027434	-1.2933	-0.00069621	538.3271459439607	133.46	1.3747	133.63	133.45	134.83	0.16487	0.023739	3.1598E-05	NaN	4.3292	64	26	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63232000			4935	6956	3276	3320							0.10624189758118519
CLNDMPFN	8	Unmodified	_CLNDMPFN_					0	0	0			REV__ENSG00000132681|ENST00000368081|ATP1A4	REV__ENSG00000132681|ENST00000368081|ATP1A4	MSMS	A375_MHC_IP_R1	1	477.1863098144531	2	477.196413	952.378273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.98	1	134.98	134.48	135.48	0								0	0	0	0.16876	1	52050	52050		5.2307	0.90143	1		+		4936	18670	3277	3321	4814	4814					-0.09982056048477261
CLRVLFLLS	9	Unmodified	_CLRVLFLLS_					0	0	0			REV__ENST00000352732.9_1_15:89745032-89745188:+|nuORF	REV__ENST00000352732.9_1_15:89745032-89745188:+|nuORF	MSMS	A375_MHC_IP_R1	1	532.2162475585938	2	532.320263	1062.62597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.8	1	119.8	119.3	120.3	0								0	0	0	0.15486	1	44330	44330		4.3292	0	1		+		4937	23803	3278	3322	4815	4815					0.09716440881629751
CLTTLVLH	8	Unmodified	_CLTTLVLH_					0	0	0			REV__ENST00000473331.1_1_1:155295049-155295388:+|nuORF	REV__ENST00000473331.1_1_1:155295049-155295388:+|nuORF	MSMS	A375_MHC_IP_R1	1	450.153076171875	2	450.254588	898.494624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.374	1	41.374	40.874	41.874	0								0	0	0	0.16876	1	14278	14278		20.871	0	1		+		4938	20184	3279	3323	4816	4816					0.04131630513722939
CLWVNNCVG	9	Unmodified	_CLWVNNCVG_					0	0	0		ZDHHC2|p.P158L|1|0.17|ENSG00000104219|chr8:17198410-17198410|C/T|missense_variant	ZDHHC2|p.P158L|1|0.17|ENSG00000104219|chr8:17198410-17198410|C/T|missense_variant	ZDHHC2|p.P158L|1|0.17|ENSG00000104219|chr8:17198410-17198410|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	504.1710510253906	2	504.225505	1006.43646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.21	1	22.21	21.71	22.71	0								0	0	0	0.15486	1	5937	5937		4.3292	1.7518	1				4939	30195	3280	3324	4817	4817					-0.06650374403193382
CLYLALAIYF	10	Unmodified	_CLYLALAIYF_					0	0	0		ENST00000541225.5_1_17:66883094-66937097:-|nuORF;nc|ENSG00000141338|O94911-1|ABCA8;ENSG00000141338|ENST00000586539|ABCA8	ENST00000541225.5_1_17:66883094-66937097:-|nuORF	ENST00000541225.5_1_17:66883094-66937097:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	397.62762451171875	3	397.215711	1188.6253	-0.16697	-6.6324E-05	1.5714	0.00062419	1.4044	0.00055787	397.2162883564606	19.777	0.40707	19.777	19.623	20.03	0					11	7	2	0	0	0	0.93005	1	5049	5049		7.1017	0	1	713350			4940	5229	3281	3325	4818	4818					0.03853601441915089
CLYLLFPI	8	Unmodified	_CLYLLFPI_					0	0	0			REV__ENST00000433477.3_1_4:156847129-156849490:-|nuORF	REV__ENST00000433477.3_1_4:156847129-156849490:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	490.73626708984375	2	491.277532	980.540511	-0.4847	-0.00023812	0.73236	0.00035979	0.24766	0.00012167	491.2778307793257	108.63	0.86707	109.38	109.06	109.93	0.74684					23	16	2	0	0	0	0.972	1	41047	41047		6.3541	0	1	1049000	+		4941	24732	3282	3326	4819	4819					0.049462756959542276
CMCQCHNCLY	10	Unmodified	_CMCQCHNCLY_					0	0	0		ENST00000445430.5_1_3:195412816-195412894:+|nuORF	ENST00000445430.5_1_3:195412816-195412894:+|nuORF	ENST00000445430.5_1_3:195412816-195412894:+|nuORF	MSMS	A375_MHC_IP_R1	1	609.1796264648438	2	609.205075	1216.3956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.77	1	105.77	105.27	106.27	0								0	0	0	0.15591	1	38829	38829		1.6526	0.17072	1				4942	12027	3283	3327	4820	4820					-0.20394543100996998
CMFAVSSFGIY	11	Unmodified	_CMFAVSSFGIY_					0	0	0			REV__tr|U7SMJ9|U7SMJ9_FUSNUSimplesugartransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01898PE=4SV=1	REV__tr|U7SMJ9|U7SMJ9_FUSNUSimplesugartransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01898PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	613.1742553710938	2	612.775028	1223.5355	-0.7402	-0.00045357	-0.73751	-0.00045193	-1.4777	-0.0009055	612.7744542899791	65.778	0.61066	66.516	66.222	66.833	0.73812					19	11	2	0	0	0	0.52598	1	24947	24947		29.082	1.4528	1	2887500	+		4943	28304	3284	3328	4821	4821					-0.06732396228926518
CMFAVSSFGIY	11	Unmodified	_CMFAVSSFGIY_					0	0	0			REV__tr|U7SMJ9|U7SMJ9_FUSNUSimplesugartransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01898PE=4SV=1	REV__tr|U7SMJ9|U7SMJ9_FUSNUSimplesugartransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01898PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	612.775028	1223.5355	-0.54141	-0.00033177	-0.91704	-0.00056194	-1.4584	-0.0008937	612.7745980961906	66.493	0.50977	66.493	66.275	66.785	0	-0.011741	-0.00013806	NaN	29.082	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2344600	+		4944	28304	3284	3328							-0.06732396228926518
CMHNDDCDCA	10	Unmodified	_CMHNDDCDCA_					0	0	0			REV__ENSG00000175065|ENST00000308128|DSG4	REV__ENSG00000175065|ENST00000308128|DSG4	MSMS	A375_MHC_IP_R1	1	563.7049560546875	2	563.656469	1125.29838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.91	1	89.91	89.41	90.41	0								0	0	0	0.15642	1	33038	33038		0	0	1		+		4945	21321	3285	3329	4822	4822					-0.2592523377629732
CMHNDDCDCA	10	Unmodified	_CMHNDDCDCA_					0	0	0			REV__ENSG00000175065|ENST00000308128|DSG4	REV__ENSG00000175065|ENST00000308128|DSG4	MSMS	A375_MHC_IP_R2	2	563.6997680664062	2	563.656469	1125.29838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.143	1	59.89	59.39	60.39	0.74714								0	0	0	0.15642	1	22381	22381		0	0	1		+		4946	21321	3285	3329	4823	4823					-0.2592523377629732
CMNCHLMD	8	Unmodified	_CMNCHLMD_					0	0	0			REV__KMT2C|p.E4343Kfs*13|1|0.36|ENSG00000055609|chr7:152148900-152148900|C/-|frameshift_variant	REV__KMT2C|p.E4343Kfs*13|1|0.36|ENSG00000055609|chr7:152148900-152148900|C/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	483.6575012207031	2	483.668651	965.322749	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.734	1	56.484	55.984	56.984	0.75015								0	0	0	0.16876	1	21058	21058		9.3474	3.587	1		+		4947	16415	3286	3330	4824	4824					-0.16129928832117457
CMSFLLPQA	9	Unmodified	_CMSFLLPQA_					0	0	0			REV__ENST00000264335.12_1_17:1247845-1248070:-|nuORF	REV__ENST00000264335.12_1_17:1247845-1248070:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	506.1788330078125	2	505.245906	1008.47726	-0.93495	-0.00047238	-0.012909	-6.522E-06	-0.94786	-0.0004789	505.24595519619845	35.219	0.8599	35.983	35.727	36.587	0.76338					41	16	4	0	0	0	0.64808	1	12862	12862		11.64	3.047	1	15068000	+		4948	23235	3287	3331	4825	4825					-0.02664033083567574
CMTRAWRRR	9	Unmodified	_CMTRAWRRR_					0	0	0			REV__ENST00000371712.3_1_9:139327509-139329265:-|nuORF	REV__ENST00000371712.3_1_9:139327509-139329265:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	618.2146606445312	2	618.321668	1234.62878	-0.51605	-0.00031908	-3.7792	-0.0023368	-4.2953	-0.0026559	618.8217834653002	100.66	0.61702	101.43	101.13	101.75	0.76278					26	11	3	0	0	0	0.76187	1	38183	38183		11.64	0	1	4117100	+		4949	24050	3288	3332	4826	4826					0.0208538578747266
CNARKRQVRRR	11	Unmodified	_CNARKRQVRRR_					0	0	0			REV__DCAF8|p.R125C|1|0.58|ENSG00000132716|chr1:160240047-160240047|G/A|missense_variant	REV__DCAF8|p.R125C|1|0.58|ENSG00000132716|chr1:160240047-160240047|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	481.6829528808594	3	481.616376	1441.8273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.42	1	140.46	139.96	140.96	0.04216								0	0	0	0.16354	1	54969	54969		0.08335	0	1		+		4950	15968	3289	3333	4827	4827					0.12405942690702432
CNASIASW	8	Unmodified	_CNASIASW_					0	0	0			REV__AluSq_dup1109|chr1:161212562-161212852:-|1.4642519569778285|0.0170353827791468|6.43|472.0|20|3|anti-sense	REV__AluSq_dup1109|chr1:161212562-161212852:-|1.4642519569778285|0.0170353827791468|6.43|472.0|20|3|anti-sense	MSMS	A375_MHC_IP_R1	1	426.136962890625	2	426.189445	850.364338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.05	1	44.05	43.55	44.55	0								0	0	0	0.16876	1	15350	15350		16.942	2.3606	1		+		4951	15375	3290	3334	4828	4828					-0.06682965485254044
CNASIASW	8	Unmodified	_CNASIASW_					0	0	0			REV__AluSq_dup1109|chr1:161212562-161212852:-|1.4642519569778285|0.0170353827791468|6.43|472.0|20|3|anti-sense	REV__AluSq_dup1109|chr1:161212562-161212852:-|1.4642519569778285|0.0170353827791468|6.43|472.0|20|3|anti-sense	MSMS	A375_MHC_IP_R2	2	426.1368408203125	2	426.189445	850.364338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.368	1	44.14	43.64	44.64	0.7724								0	0	0	0.16876	1	16156	16156		18.135	3.5533	1		+		4952	15375	3290	3334	4829	4829					-0.06682965485254044
CNCACEYEDCC	11	Unmodified	_CNCACEYEDCC_					0	0	0			REV__ENSG00000110799|ENST00000261405|VWF	REV__ENSG00000110799|ENST00000261405|VWF	MSMS	A375_MHC_IP_R1	1	419.3954162597656	3	419.111272	1254.31199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.3068	1	1.3068	0.8068	1.8068	0								0	0	0	0.1636	1	303	303		0	0	1		+		4953	17641	3291	3335	4830	4830					-0.3049974405935245
CNCACEYEDCC	11	Unmodified	_CNCACEYEDCC_					0	0	0			REV__ENSG00000110799|ENST00000261405|VWF	REV__ENSG00000110799|ENST00000261405|VWF	MSMS	A375_MHC_IP_R1	1	419.3950500488281	3	419.111272	1254.31199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.431	1	5.431	4.931	5.931	0								0	0	0	0.1636	1	1239	1239		0	0	1		+		4954	17641	3291	3335	4831	4831					-0.3049974405935245
CNCACEYEDCC	11	Unmodified	_CNCACEYEDCC_					0	0	0			REV__ENSG00000110799|ENST00000261405|VWF	REV__ENSG00000110799|ENST00000261405|VWF	MSMS	A375_MHC_IP_R1	1	419.36407470703125	3	419.111272	1254.31199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.235	1	15.235	14.735	15.735	0								0	0	0	0.1636	1	3508	3508		0	0	1		+		4955	17641	3291	3335	4832	4832					-0.3049974405935245
CNCACEYEDCC	11	Unmodified	_CNCACEYEDCC_					0	0	0			REV__ENSG00000110799|ENST00000261405|VWF	REV__ENSG00000110799|ENST00000261405|VWF	MSMS	A375_MHC_IP_R2	2	628.0789794921875	2	628.16327	1254.31199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.668	1	84.407	83.907	84.907	0.73962								0	0	0	0.1636	1	31802	31802		0	0	1		+		4956	17641	3291	3335	4833	4833					-0.3049974405935245
CNCCCRCCF	9	Unmodified	_CNCCCRCCF_					0	0	0		ENSG00000183067|ENST00000380588|IGSF5	ENSG00000183067|ENST00000380588|IGSF5	ENSG00000183067|ENST00000380588|IGSF5	MSMS	A375_MHC_IP_R1	1	527.6624145507812	2	527.646338	1053.27812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.244	1	77.244	76.744	77.744	0								0	0	0	0.15486	1	28175	28175		0.6015	0.6015	1				4957	8462	3292	3336	4834	4834					-0.2463839924146214
CNGCCCAA	8	Unmodified	_CNGCCCAA_					0	0	0			REV__ENST00000479160.1_1_1:109635596-109637201:+|nuORF	REV__ENST00000479160.1_1_1:109635596-109637201:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	744.592529296875	1	744.193198	743.185921	-0.77435	-0.00057627	-1.2189	-0.00090706	-1.9932	-0.0014833	744.1937016364974	45.176	5.5732	45.941	43.465	49.038	0.76518					185	109	2	0	0	0	0.77861	1	17362	17362		0	0	1	2913100	+		4958	25228	3293	3337	4835	4835					-0.19594417991834234
CNGCCCAA	8	Unmodified	_CNGCCCAA_					0	0	0			REV__ENST00000479160.1_1_1:109635596-109637201:+|nuORF	REV__ENST00000479160.1_1_1:109635596-109637201:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	744.5925903320312	1	744.193198	743.185921	-0.77435	-0.00057627	-1.2189	-0.00090706	-1.9932	-0.0014833	744.1937016364974	45.176	5.5732	45.941	43.465	49.038	0.76518					185	109	2	0	0	0	0.972	1	16088	16088		0	0	1	2913100	+		4959	25228	3293	3337	4836	4836					-0.19594417991834234
CNKMFQKKT	9	Unmodified	_CNKMFQKKT_					0	0	0			REV__ENSG00000111536|ENST00000229134|IL26	REV__ENSG00000111536|ENST00000229134|IL26	MSMS	A375_MHC_IP_R2	2	376.8584899902344	3	376.528183	1126.56272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.67	1	146.69	146.19	147.19	0.019913								0	0	0	0.15486	1	57110	57110		0.96228	0	1		+		4960	17675	3294	3338	4837	4837					0.004501321020825344
CNLKFVPYSY	10	Unmodified	_CNLKFVPYSY_					0	0	0		ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	MULTI-SECPEP	A375_MHC_IP_R1	1	411.6072082519531	3	411.870603	1232.58998	0.30697	0.00012643	1.5072	0.00062077	1.8142	0.0007472	411.87132440534185	35.417	0.30448	35.417	35.269	35.573	0					8	5	2	0	0	0	0.92832	1	11760	11760		12.175	3.1985	1	690210			4961	2912	3295	3339	4838	4838					-0.017010610858960717
CNPLRGESPRR	11	Unmodified	_CNPLRGESPRR_					0	0	0			REV__ENSG00000108557|ENST00000353383|RAI1	REV__ENSG00000108557|ENST00000353383|RAI1	MSMS	A375_MHC_IP_R1	1	428.6642761230469	3	428.891172	1283.65169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.46	1	140.46	139.96	140.96	0								0	0	0	0.16309	1	53950	53950		2.6312	1.3016	1		+		4962	17538	3296	3340	4839	4839					0.02120683385942357
CNRYDKKY	8	Unmodified	_CNRYDKKY_					0	0	0		ENST00000498474.2_1_X:7003468-7066154:-|nuORF;nc|ENSG00000130021|Q08623-2|PUDP;nc|ENSG00000130021|Q08623-3|PUDP;ENSG00000130021|ENST00000381077|PUDP;nc|ENSG00000130021|Q08623-4|PUDP	ENST00000498474.2_1_X:7003468-7066154:-|nuORF	ENST00000498474.2_1_X:7003468-7066154:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	363.9374694824219	3	363.843048	1088.50731	-0.10363	-3.7705E-05	-0.27972	-0.00010177	-0.38335	-0.00013948	363.84283893477823	26.02	0.50575	26.02	25.816	26.322	0					19	9	3	0	0	0	0.97144	1	7700	7700		10.824	1.8477	1	5326300			4963	4218	3297	3341	4840	4840					-0.033399580940340456
CNRYDKKY	8	Unmodified	_CNRYDKKY_					0	0	0		ENST00000498474.2_1_X:7003468-7066154:-|nuORF;nc|ENSG00000130021|Q08623-2|PUDP;nc|ENSG00000130021|Q08623-3|PUDP;ENSG00000130021|ENST00000381077|PUDP;nc|ENSG00000130021|Q08623-4|PUDP	ENST00000498474.2_1_X:7003468-7066154:-|nuORF	ENST00000498474.2_1_X:7003468-7066154:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	364.28509521484375	3	363.843048	1088.50731	-0.49038	-0.00017842	-0.21688	-7.8909E-05	-0.70726	-0.00025733	363.84295492213647	25.409	0.55999	26.053	25.822	26.382	0.64368					22	10	3	0	0	0	0.97144	1	8481	8481		10.824	3.215	1	5397200			4964	4218	3297	3341	4841	4841					-0.033399580940340456
CNTIKERGNVY	11	Unmodified	_CNTIKERGNVY_					0	0	0			REV__ENSG00000165124|ENST00000374469|SVEP1	REV__ENSG00000165124|ENST00000374469|SVEP1	MSMS	A375_MHC_IP_R1	1	432.9387512207031	3	432.883683	1295.62922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.268	1	39.268	38.768	39.768	0								0	0	0	0.16124	1	13403	13403		6.6235	2.2173	1		+		4965	20550	3298	3342	4842	4842					-0.006769608023205365
CNYFVFDV	8	Unmodified	_CNYFVFDV_					0	0	0			REV__PLXNA1|p.G1482Hfs*5|1|0.07|ENSG00000114554|chr3:127028020-127028026|GGGTGAG/-|frameshift_variant	REV__PLXNA1|p.G1482Hfs*5|1|0.07|ENSG00000114554|chr3:127028020-127028026|GGGTGAG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	503.68927001953125	2	503.720578	1005.4266	-0.55349	-0.00027881	0.35951	0.00018109	-0.19399	-9.7714E-05	503.7206653948434	53.027	0.65812	53.027	52.643	53.301	0					24	12	3	0	0	0	0.77702	1	18756	18756		5.7604	0.52976	1	4281000	+		4966	17830	3299	3343	4843	4843					-0.07589239136927972
CPCCCCPCCTE	11	Unmodified	_CPCCCCPCCTE_					0	0	0			REV__ENST00000599649.5_1_19:52149845-52150035:-|nuORF	REV__ENST00000599649.5_1_19:52149845-52150035:-|nuORF	MSMS	A375_MHC_IP_R1	1	582.6666870117188	2	582.642604	1163.27066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.942	1	92.942	92.442	93.442	0								0	0	0	0.1636	1	34161	34161		0	0	1		+		4967	26495	3300	3344	4844	4844					-0.3044491962405118
CPCCCSSECCS	11	Unmodified	_CPCCCSSECCS_					0	0	0			REV__ENSG00000241241|ENST00000440582|KRTAP4-16	REV__ENSG00000241241|ENST00000440582|KRTAP4-16	MSMS	A375_MHC_IP_R2	2	562.6383056640625	2	562.635833	1123.25711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.713	1	47.474	46.974	47.974	0.76128								0	0	0	0.1636	1	17500	17500		0	0	1		+		4968	22786	3301	3345	4845	4845					-0.2995845413161078
CPCCFCCL	8	Unmodified	_CPCCFCCL_					0	0	0			REV__ENSG00000135604|ENST00000367568|STX11	REV__ENSG00000135604|ENST00000367568|STX11	MSMS	A375_MHC_IP_R1	1	446.1706848144531	2	446.138141	890.261729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.77	1	87.77	87.27	88.27	0								0	0	0	0.16876	1	32212	32212		0.79363	0	1		+		4969	18867	3302	3346	4846	4846					-0.18779157135918467
CPCCPAHCCC	10	Unmodified	_CPCCPAHCCC_					0	0	0		nc|ENSG00000145103|Q86SU0-3|ILDR1;ENST00000460554.1_1_3:121712781-121740924:-|nuORF;nc|ENSG00000145103|Q86SU0-2|ILDR1;nc|ENSG00000145103|Q86SU0-6|ILDR1;ENSG00000145103|ENST00000344209|ILDR1	nc|ENSG00000145103|Q86SU0-3|ILDR1	nc|ENSG00000145103|Q86SU0-3|ILDR1	MSMS	A375_MHC_IP_R2	2	520.2203369140625	2	520.140889	1038.26722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.92	1	119.53	119.03	120.03	0.60909								0	0	0	0.15642	1	45227	45227		0	0	1				4970	5538	3303	3347	4847	4847					-0.25037801615758326
CPCLPGYNAAY	11	Unmodified	_CPCLPGYNAAY_					0	0	0		ENSG00000185933|ENST00000329905|CALHM1	ENSG00000185933|ENST00000329905|CALHM1	ENSG00000185933|ENST00000329905|CALHM1	MULTI-SECPEP	A375_MHC_IP_R2	2	585.6878662109375	2	586.249177	1170.4838	-0.43414	-0.00025451	-0.29813	-0.00017478	-0.73227	-0.00042929	586.2486498336999	87.237	0.50558	87.97	87.712	88.218	0.733					19	9	3	0	0	0	0.99109	1	33216	33216		10.074	2.1638	1	2970700			4971	8708	3304	3348	4848	4848					-0.09462139922857205
CPCNCDDGME	10	Unmodified	_CPCNCDDGME_					0	0	0			REV__ENST00000431629.5_2_7:114654517-114655986:+|nuORF	REV__ENST00000431629.5_2_7:114654517-114655986:+|nuORF	MSMS	A375_MHC_IP_R2	2	543.374267578125	2	543.653395	1085.29224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.755	1	18.351	17.851	18.851	0.59616								0	0	0	0.15642	1	5240	5240		0	0	1		+		4972	18839	3305	3349	4849	4849					-0.24699752007791176
CPEDNRIKE	9	Unmodified	_CPEDNRIKE_					0	0	0		FILIP1|p.K628R|1|0.49|ENSG00000118407|chr6:75313949-75313949|T/C|missense_variant	FILIP1|p.K628R|1|0.49|ENSG00000118407|chr6:75313949-75313949|T/C|missense_variant	FILIP1|p.K628R|1|0.49|ENSG00000118407|chr6:75313949-75313949|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	552.695068359375	2	552.26113	1102.50771	-0.51922	-0.00028674	-0.081275	-4.4885E-05	-0.60049	-0.00033163	552.2609562960198	95.011	1.169	95.761	95.28	96.449	0.75045					57	22	4	0	0	0	0.70307	1	35988	35988		3.5965	0	1	15640000			4973	14002	3306	3350	4850	4850					-0.039445831648208696
CPGQSPKY	8	Unmodified	_CPGQSPKY_					0	0	0		ENST00000264033.5_1_11:119149415-119156175:+|nuORF	ENST00000264033.5_1_11:119149415-119156175:+|nuORF	ENST00000264033.5_1_11:119149415-119156175:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	439.7731628417969	2	440.205096	878.395638	0.27426	0.00012073	1.3602	0.00059875	1.6344	0.00071948	440.20480370614047	22.461	0.70921	22.461	22.164	22.873	0					15	13	2	0	0	0	0.972	1	6030	6030		7.2892	0	1	959050			4974	10327	3307	3351	4851	4851					-0.04842392451166688
CPHRGHDDIV	10	Unmodified	_CPHRGHDDIV_					0	0	0		nc|ENSG00000166689|Q6IQ23|PLEKHA7;nc|ENSG00000166689|Q6IQ23-2|PLEKHA7;ENSG00000166689|ENST00000531066|PLEKHA7	nc|ENSG00000166689|Q6IQ23|PLEKHA7	nc|ENSG00000166689|Q6IQ23|PLEKHA7	MULTI-SECPEP	A375_MHC_IP_R1	1	575.2027587890625	2	574.766914	1147.51928	-0.16409	-9.4313E-05	-2.8187	-0.0016201	-2.9828	-0.0017144	575.2679894553467	101.03	0.45518	101.03	100.69	101.14	0					12	8	2	0	0	0	0.91909	1	37116	37116		9.3831	5.0539	1	458430			4975	7102	3308	3352	4852	4852					-0.048583413508595186
CPPCDEDWDKD	11	Unmodified	_CPPCDEDWDKD_					0	0	0		ENST00000546575.1_1_12:54852895-54857111:-|nuORF;ENST00000552395.5_1_12:54852895-54867341:-|nuORF;ENSG00000170627|ENST00000305879|GTSF1	ENST00000546575.1_1_12:54852895-54857111:-|nuORF	ENST00000546575.1_1_12:54852895-54857111:-|nuORF	MSMS	A375_MHC_IP_R1	1	661.5867919921875	2	661.736828	1321.4591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.24	1	113.24	112.74	113.74	0								0	0	0	0.16302	1	41507	41507		2.9952	0	1				4976	7526	3309	3353	4853	4853					-0.1887686458690041
CPRDFEDY	8	Carbamidomethyl (C)	_C(Carbamidomethyl (C))PRDFEDY_	C(1)PRDFEDY		C(55)PRDFEDY		0	1	0		ENSG00000253117|ENST00000254627|OC90;nc|ENSG00000253117|Q02509-3|OC90	ENSG00000253117|ENST00000254627|OC90	ENSG00000253117|ENST00000254627|OC90	MULTI-MSMS	A375_MHC_IP_R1	1	551.6212768554688	2	551.218931	1100.42331	-0.49256	-0.00027151	4.3237	0.0023833	3.8311	0.0021118	551.2193894541394	73.213	1.6726	73.213	71.917	73.589	0					50	32	3	0	0	0	0.36021	1	26635	26635		54.774	7.0249	1	3368100			4977	9855	3310	3354	4854	4854	51				-0.12288533981609362
CPSSAAPCPA	10	Unmodified	_CPSSAAPCPA_					0	0	0		ENSG00000283536|ENST00000635789|unknown	ENSG00000283536|ENST00000635789|unknown	ENSG00000283536|ENST00000635789|unknown	MSMS	A375_MHC_IP_R2	2	452.1868591308594	2	452.188588	902.362623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.47	1	81.215	80.715	81.715	0.74474								0	0	0	0.15398	1	30550	30550		7.9102	1.5561	1				4978	10048	3311	3355	4855	4855					-0.09246342565540999
CQAGRANG	8	Unmodified	_CQAGRANG_					0	0	0		SBK1|p.D226N|1|0.47|ENSG00000188322|chr16:28320322-28320322|G/A|missense_variant	SBK1|p.D226N|1|0.47|ENSG00000188322|chr16:28320322-28320322|G/A|missense_variant	SBK1|p.D226N|1|0.47|ENSG00000188322|chr16:28320322-28320322|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	776.4730834960938	1	776.346797	775.33952	-0.66765	-0.00051833	-1.0248	-0.0007956	-1.6925	-0.0013139	776.3458852861016	86.388	0.60785	86.388	86.072	86.679	0					17	11	2	0	0	0	0.7779	1	31657	31657		2.5775	0	1	2686200			4979	29109	3312	3356	4856	4856					-0.057136005679922164
CQAGRANG	8	Unmodified	_CQAGRANG_					0	0	0		SBK1|p.D226N|1|0.47|ENSG00000188322|chr16:28320322-28320322|G/A|missense_variant	SBK1|p.D226N|1|0.47|ENSG00000188322|chr16:28320322-28320322|G/A|missense_variant	SBK1|p.D226N|1|0.47|ENSG00000188322|chr16:28320322-28320322|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	776.346797	775.33952	-0.66765	-0.00051833	-1.0248	-0.0007956	-1.6925	-0.0013139	776.3458852861016	86.388	0.60785	86.388	86.072	86.679	0	-0.13155	-0.00011819	NaN	2.5775	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2686200			4980	29109	3312	3356							-0.057136005679922164
CQAGRANG	8	Unmodified	_CQAGRANG_					0	0	0		SBK1|p.D226N|1|0.47|ENSG00000188322|chr16:28320322-28320322|G/A|missense_variant	SBK1|p.D226N|1|0.47|ENSG00000188322|chr16:28320322-28320322|G/A|missense_variant	SBK1|p.D226N|1|0.47|ENSG00000188322|chr16:28320322-28320322|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		1	776.346797	775.33952	-0.7808	-0.00060617	-0.67139	-0.00052123	-1.4522	-0.0011274	776.3460485186592	85.918	0.5583	86.651	86.338	86.896	0.73301	0.13155	0.00015618	NaN	2.5775	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2187300			4981	29109	3312	3356							-0.057136005679922164
CQCCPQYCCC	10	Unmodified	_CQCCPQYCCC_					0	0	0		nc|ENSG00000145103|Q86SU0-3|ILDR1;ENST00000460554.1_1_3:121712781-121740924:-|nuORF;nc|ENSG00000145103|Q86SU0-2|ILDR1;nc|ENSG00000145103|Q86SU0-6|ILDR1;ENSG00000145103|ENST00000344209|ILDR1	nc|ENSG00000145103|Q86SU0-3|ILDR1	nc|ENSG00000145103|Q86SU0-3|ILDR1	MSMS	A375_MHC_IP_R2	2	577.1998901367188	2	577.156736	1152.29892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.38	1	106.14	105.64	106.64	0.76308								0	0	0	0.15642	1	39857	39857		0	0	1				4982	5538	3313	3357	4857	4857					-0.2711385365244041
CQCDSCGMSF	10	Unmodified	_CQCDSCGMSF_					0	0	0		nc|ENSG00000189180|Q06730|ZNF33A;ENSG00000189180|ENST00000432900|ZNF33A;nc|ENSG00000189180|Q06730-3|ZNF33A	nc|ENSG00000189180|Q06730|ZNF33A	nc|ENSG00000189180|Q06730|ZNF33A	MSMS	A375_MHC_IP_R2	2	540.6566162109375	2	540.666305	1079.31806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.726	1	97.482	96.982	97.982	0.75586								0	0	0	0.1552	1	36720	36720		3.9444	1.3669	1				4983	8968	3314	3358	4858	4858					-0.2184285776552315
CQCDSCGMSF	10	Unmodified	_CQCDSCGMSF_					0	0	0		nc|ENSG00000189180|Q06730|ZNF33A;ENSG00000189180|ENST00000432900|ZNF33A;nc|ENSG00000189180|Q06730-3|ZNF33A	nc|ENSG00000189180|Q06730|ZNF33A	nc|ENSG00000189180|Q06730|ZNF33A	MSMS	A375_MHC_IP_R2	2	540.7023315429688	2	540.666305	1079.31806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.749	1	97.505	97.005	98.005	0.75586								0	0	0	0.1552	1	36728	36728		3.9444	1.3669	1				4984	8968	3314	3358	4859	4859					-0.2184285776552315
CQDYERKM	8	Unmodified	_CQDYERKM_					0	0	0			REV__ENSG00000170855|ENST00000546954|TRIAP1	REV__ENSG00000170855|ENST00000546954|TRIAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1310424804688	2	536.731151	1071.44775	-1.5296	-0.000821	0.6416	0.00034437	-0.88804	-0.00047664	536.7316276771872	29.526	0.60634	30.225	30.032	30.638	0.69872					28	11	3	0	0	0	0.86263	1	10290	10290		26.884	15.243	1	17892000	+		4985	21025	3315	3359	4860	4860					-0.08511597099732171
CQFPVCMLD	9	Unmodified	_CQFPVCMLD_					0	0	0		ENST00000379162.8_1_X:24549786-24549834:+|nuORF	ENST00000379162.8_1_X:24549786-24549834:+|nuORF	ENST00000379162.8_1_X:24549786-24549834:+|nuORF	MSMS	A375_MHC_IP_R1	1	528.1654663085938	2	528.221574	1054.42859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.886	1	64.886	64.386	65.386	0								0	0	0	0.1535	1	23485	23485		15.847	3.3156	1				4986	11327	3316	3360	4861	4861					-0.09644269714976872
CQFQFRNGR	9	Unmodified	_CQFQFRNGR_					0	0	0		ENSG00000154764|ENST00000285018|WNT7A	ENSG00000154764|ENST00000285018|WNT7A	ENSG00000154764|ENST00000285018|WNT7A	MULTI-SECPEP	A375_MHC_IP_R2	2	385.1341552734375	3	385.854058	1154.54035	-0.46506	-0.00017944	-0.095072	-3.6684E-05	-0.56013	-0.00021613	386.5241616277001	34.196	0.50956	34.948	34.803	35.312	0.75225					24	9	4	0	0	0	0.77003	1	12289	12289		7.609	2.7119	1	4746200			4987	6106	3317	3361	4862	4862					-0.03074331251309559
CQICFNYY	8	Unmodified	_CQICFNYY_					0	0	0		RNF152|p.S20N|1|0.23|ENSG00000176641|chr18:61816405-61816405|C/T|missense_variant;RNF152|p.P21S|1|0.18|ENSG00000176641|chr18:61816403-61816403|G/A|missense_variant;RNF152|p.P21L|1|0.19|ENSG00000176641|chr18:61816402-61816402|G/A|missense_variant;ENSG00000176641|ENST00000312828|RNF152	RNF152|p.S20N|1|0.23|ENSG00000176641|chr18:61816405-61816405|C/T|missense_variant	RNF152|p.S20N|1|0.23|ENSG00000176641|chr18:61816405-61816405|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	526.7217407226562	2	527.212063	1052.40957	-0.74489	-0.00039272	0.47094	0.00024829	-0.27395	-0.00014443	527.2122169274746	41.182	0.50633	41.182	40.913	41.419	0					16	9	2	0	0	0	0.77717	1	14107	14107		5.2307	5.2307	1	3302000			4988	8030	3318	3362	4863	4863					-0.11453483014406629
CQKERFDRS	9	Unmodified	_CQKERFDRS_					0	0	0			REV__nc|ENSG00000049192|Q9UKP5-2|ADAMTS6	REV__nc|ENSG00000049192|Q9UKP5-2|ADAMTS6	MSMS	A375_MHC_IP_R2	2	584.6780395507812	2	584.780022	1167.54549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.62	1	107.38	106.88	107.88	0.75977								0	0	0	0.15142	1	40297	40297		19.257	0	1		+		4989	27102	3319	3363	4864	4864					-0.03158072179371629
CQKIFTSTSN	10	Unmodified	_CQKIFTSTSN_					0	0	0			REV__ENST00000482162.1_1_3:119176866-119180963:-|nuORF	REV__ENST00000482162.1_1_3:119176866-119180963:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	564.664306640625	2	564.771331	1127.52811	-0.67572	-0.00038163	-0.90398	-0.00051054	-1.5797	-0.00089217	564.7696311901589	33.15	1.4207	33.902	33.483	34.904	0.75225					75	27	4	0	0	0	0.67512	1	11748	11748		15.248	0	1	81175000	+		4990	25275	3320	3364	4865	4865					-0.03055412505023014
CQNCETRWAF	10	Unmodified	_CQNCETRWAF_					0	0	0			REV__ENST00000483629.5_1_22:29695128-29696148:+|nuORF	REV__ENST00000483629.5_1_22:29695128-29696148:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	629.6603393554688	2	629.260607	1256.50666	-0.80262	-0.00050506	-0.042046	-2.6458E-05	-0.84467	-0.00053152	629.2605302073985	39.879	1.0665	39.879	39.238	40.304	0					27	20	2	0	0	0	0.6502	1	13683	13683		17.113	5.4726	1	2019200	+		4991	21720	3321	3365	4866	4866					-0.11133120805379804
CQTGIVLHKY	10	Unmodified	_CQTGIVLHKY_					0	0	0		ENSG00000161036|ENST00000292616|LRWD1;ENST00000473880.5_1_7:102108873-102109143:+|nuORF	ENSG00000161036|ENST00000292616|LRWD1	ENSG00000161036|ENST00000292616|LRWD1	MSMS	A375_MHC_IP_R1	1	581.25537109375	2	581.307884	1160.60121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.862	1	83.862	83.362	84.362	0								0	0	0	0.14673	1	30697	30697		24.021	0	1				4992	6461	3322	3366	4867	4867					0.027337610082440733
CRCLFFLL	8	Unmodified	_CRCLFFLL_					0	0	0		ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9419250488281	2	507.766809	1013.51906	-0.84681	-0.00042998	4.1032	0.0020835	3.2564	0.0016535	507.7679488803564	81.118	0.25681	81.863	81.673	81.93	0.74474					6	4	2	0	0	0	0.95327	1	30810	30810		17.087	7.7391	1	421400			4993	1371	3323	3367	4868	4868					0.012845673955894199
CRGCCGGC	8	Unmodified	_CRGCCGGC_					0	0	0		nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000285843|P0DSO2|SCYGR9	nc|ENSG00000285843|P0DSO2|SCYGR9	MULTI-MSMS	A375_MHC_IP_R1	1	758.2720336914062	1	758.220081	757.212805	-0.47204	-0.00035791	0.96866	0.00073446	0.49662	0.00037655	758.2216731766597	88.97	1.8267	88.97	88.205	90.032	0					50	35	2	0	0	0	0.77861	2	32754	32754;32865		0	0	1	1944200			4994	14947	3324	3368	4869;4870	4869					-0.1755130938062166
CRGCCGGC	8	Unmodified	_CRGCCGGC_					0	0	0		nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000285843|P0DSO2|SCYGR9	nc|ENSG00000285843|P0DSO2|SCYGR9	MULTI-MSMS	A375_MHC_IP_R1	1	758.0797729492188	1	758.220081	757.212805	-0.69993	-0.0005307	1.0397	0.00078832	0.33977	0.00025762	758.22168350843	90.647	1.3686	90.647	89.931	91.299	0					46	26	2	0	0	0	0.77861	2	33201	33201;33336		0	0	1	1871800			4995	14947	3324	3368	4871;4872	4871					-0.1755130938062166
CRGCCGGC	8	Unmodified	_CRGCCGGC_					0	0	0		nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000285843|P0DSO2|SCYGR9	nc|ENSG00000285843|P0DSO2|SCYGR9	MULTI-MSMS	A375_MHC_IP_R1	1	758.0269775390625	1	758.220081	757.212805	-0.47006	-0.00035641	0.7091	0.00053765	0.23904	0.00018124	758.2215458243405	91.856	1.1633	91.856	91.249	92.413	0					35	22	2	0	0	0	0.77861	1	33660	33660		0	0	1	1641400			4996	14947	3324	3368	4873	4873					-0.1755130938062166
CRGCCGGC	8	Unmodified	_CRGCCGGC_					0	0	0		nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000285843|P0DSO2|SCYGR9	nc|ENSG00000285843|P0DSO2|SCYGR9	MULTI-MSMS	A375_MHC_IP_R1	1	758.380859375	1	758.220081	757.212805	-0.35443	-0.00026874	1.3174	0.00099889	0.96298	0.00073015	758.2216964203266	93.167	1.879	93.167	92.261	94.14	0					56	36	2	0	0	0	0.77861	1	34494	34494		0	0	1	1980500			4997	14947	3324	3368	4874	4874					-0.1755130938062166
CRGCCGGC	8	Unmodified	_CRGCCGGC_					0	0	0		nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000285843|P0DSO2|SCYGR9	nc|ENSG00000285843|P0DSO2|SCYGR9	MULTI-MSMS	A375_MHC_IP_R1	1	759.2776489257812	1	758.220081	757.212805	-0.46371	-0.00035159	0.96687	0.0007331	0.50316	0.00038151	758.221722573389	101.01	2.2778	101.01	99.825	102.1	0					61	44	2	0	0	0	0.77861	1	37046	37046		0	0	1	1797500			4998	14947	3324	3368	4875	4875					-0.1755130938062166
CRGCCGGC	8	Unmodified	_CRGCCGGC_					0	0	0		nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000285843|P0DSO2|SCYGR9	nc|ENSG00000285843|P0DSO2|SCYGR9	MULTI-MSMS	A375_MHC_IP_R1	1	758.2822265625	1	758.220081	757.212805	-0.28946	-0.00021948	0.91968	0.00069732	0.63022	0.00047784	758.2217401959342	106.69	1.4335	106.69	106.16	107.6	0					43	27	2	0	0	0	0.77861	1	39121	39121		0	0	1	1266100			4999	14947	3324	3368	4876	4876					-0.1755130938062166
CRGCCGGC	8	Unmodified	_CRGCCGGC_					0	0	0		nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000285843|P0DSO2|SCYGR9	nc|ENSG00000285843|P0DSO2|SCYGR9	MULTI-MSMS	A375_MHC_IP_R1	1	758.6226196289062	1	758.220081	757.212805	-0.24747	-0.00018764	1.1021	0.00083562	0.85461	0.00064798	758.2219995165699	108.3	1.6743	108.3	107.65	109.32	0					54	32	2	0	0	0	0.77861	1	39646	39646		0	0	1	1448200			5000	14947	3324	3368	4877	4877					-0.1755130938062166
CRGCCGGC	8	Unmodified	_CRGCCGGC_					0	0	0		nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000285843|P0DSO2|SCYGR9	nc|ENSG00000285843|P0DSO2|SCYGR9	MULTI-SECPEP	A375_MHC_IP_R1	1	758.8523559570312	1	758.220081	757.212805	-0.85505	-0.00064831	1.0064	0.00076311	0.1514	0.0001148	758.2217178132562	144.31	0.70844	144.31	144.16	144.87	0					20	18	2	0	0	0	0.972	1	55403	55403		0	0	1	200070			5001	14947	3324	3368	4878	4878					-0.1755130938062166
CRGCCGGC	8	Unmodified	_CRGCCGGC_					0	0	0		nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000285843|P0DSO2|SCYGR9	nc|ENSG00000285843|P0DSO2|SCYGR9	MULTI-SECPEP	A375_MHC_IP_R1	1	757.7955322265625	1	758.220081	757.212805	-0.45499	-0.00034498	1.0184	0.00077218	0.56341	0.00042719	758.2216948859232	54.131	4.1101	54.131	52.438	56.548	0					130	80	2	0	0	0	0.972	1	19406	19406		0	0	1	2087400			5002	14947	3324	3368	4879	4879					-0.1755130938062166
CRGCCGGC	8	Unmodified	_CRGCCGGC_					0	0	0		nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000285843|P0DSO2|SCYGR9	nc|ENSG00000285843|P0DSO2|SCYGR9	MULTI-MSMS	A375_MHC_IP_R2	2	759.2944946289062	1	758.220081	757.212805	-1.0117	-0.00076712	1.0528	0.00079825	0.041054	3.1128E-05	758.2219986472247	55.289	1.4746	56.039	55.219	56.694	0.75075					43	28	2	0	0	0	0.77861	1	20978	20978		0	0	1	1750300			5003	14947	3324	3368	4880	4880					-0.1755130938062166
CRGCCGGC	8	Unmodified	_CRGCCGGC_					0	0	0		nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000285843|P0DSO2|SCYGR9	nc|ENSG00000285843|P0DSO2|SCYGR9	MULTI-MSMS	A375_MHC_IP_R2	2	759.1143798828125	1	758.220081	757.212805	-0.83171	-0.00063062	0.9654	0.00073199	0.13369	0.00010137	758.2216968762472	63.719	1.8786	64.459	63.431	65.31	0.74022					56	36	2	0	0	0	0.77861	2	24138	24138;24372		0	0	1	1316400			5004	14947	3324	3368	4881;4882	4881					-0.1755130938062166
CRGCCGGC	8	Unmodified	_CRGCCGGC_					0	0	0		nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000285843|P0DSO2|SCYGR9	nc|ENSG00000285843|P0DSO2|SCYGR9	MULTI-MSMS	A375_MHC_IP_R2	2	759.1116333007812	1	758.220081	757.212805	-0.86759	-0.00065782	1.207	0.0009152	0.33945	0.00025738	758.2217764925546	102.77	2.8961	103.53	102.16	105.06	0.76428					82	56	2	0	0	0	0.77861	2	38737	38737;39376		0	0	1	1894000			5005	14947	3324	3368	4883;4884	4883					-0.1755130938062166
CRGCCGGC	8	Unmodified	_CRGCCGGC_					0	0	0		nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000285843|P0DSO2|SCYGR9	nc|ENSG00000285843|P0DSO2|SCYGR9	MULTI-SECPEP	A375_MHC_IP_R2	2	758.775390625	1	758.220081	757.212805	-0.9009	-0.00068308	0.85571	0.00064882	-0.045186	-3.4261E-05	758.2217380195249	82.98	1.571	83.72	82.581	84.152	0.73962					44	30	2	0	0	0	0.972	1	31241	31241		0	0	1	1413800			5006	14947	3324	3368	4885	4885					-0.1755130938062166
CRGCCGGC	8	Unmodified	_CRGCCGGC_					0	0	0		nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000285843|P0DSO2|SCYGR9	nc|ENSG00000285843|P0DSO2|SCYGR9	MULTI-SECPEP	A375_MHC_IP_R2	2	758.1219482421875	1	758.220081	757.212805	-1.0532	-0.00079855	1.3553	0.0010276	0.30207	0.00022903	758.2221699540191	66.12	1.6312	66.858	66.121	67.752	0.73811					40	31	2	0	0	0	0.972	1	25258	25258		0	0	1	1757900			5007	14947	3324	3368	4886	4886					-0.1755130938062166
CRGCCGGC	8	Unmodified	_CRGCCGGC_					0	0	0		nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000285843|P0DSO2|SCYGR9	nc|ENSG00000285843|P0DSO2|SCYGR9	MULTI-MATCH	A375_MHC_IP_R2	2		1	758.220081	757.212805	-0.71091	-0.00053902	1.0888	0.00082556	0.3779	0.00028653	758.2218667979153	100.61	2.6497	101.38	99.761	102.41	0.76278	0.18168	4.4115E-05	NaN	0	90	51	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1411700			5008	14947	3324	3368							-0.1755130938062166
CRHKEKHKYRE	11	Unmodified	_CRHKEKHKYRE_					0	0	0			REV__ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	REV__ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	504.6750183105469	3	505.265009	1512.7732	-0.64587	-0.00032634	-0.65102	-0.00032894	-1.2969	-0.00065528	505.2647505417917	42.203	0.40891	42.975	42.707	43.116	0.7724					14	7	3	0	0	0	1.0007	1	15587	15587		2.2527	1.7982	1	1674500	+		5009	15463	3325	3369	4887	4887					0.0373230574846275
CRHKEKHKYRE	11	Unmodified	_CRHKEKHKYRE_					0	0	0			REV__ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	REV__ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	505.265009	1512.7732	-0.13914	-7.0305E-05	-0.67196	-0.00033952	-0.8111	-0.00040982	505.2647516525586	42.89	0.35421	42.89	42.689	43.043	0	-0.042585	-1.9597E-05	NaN	2.2527	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1521600	+		5010	15463	3325	3369							0.0373230574846275
CRIRENGI	8	Unmodified	_CRIRENGI_					0	0	0			REV__POTEE|p.F955I|1|0.16|ENSG00000188219|chr2:131264318-131264318|T/A|missense_variant	REV__POTEE|p.F955I|1|0.16|ENSG00000188219|chr2:131264318-131264318|T/A|missense_variant	MSMS	A375_MHC_IP_R2	2	480.6917724609375	2	480.755818	959.497083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.357	1	68.093	67.593	68.593	0.73631								0	0	0	0.16876	1	25517	25517		18.135	3.2967	1		+		5011	27824	3326	3370	4888	4888					0.01571478971391116
CRLEVQKVR	9	Unmodified	_CRLEVQKVR_					0	0	0		ENST00000274242.9_2_5:40827335-40827488:-|nuORF	ENST00000274242.9_2_5:40827335-40827488:-|nuORF	ENST00000274242.9_2_5:40827335-40827488:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	377.9535217285156	3	377.553609	1129.639	0.36231	0.00013679	-0.34783	-0.00013132	0.014485	5.4687E-06	377.5534802653152	25.127	0.45506	25.127	24.953	25.408	0					21	8	3	0	0	0	0.67539	1	7284	7284		15.739	6.7624	1	13674000			5012	10395	3327	3371	4889	4889					0.0793627199373077
CRLFIVVPK	9	Unmodified	_CRLFIVVPK_					0	0	0		ENST00000395290.6_1_11:47490324-47490525:-|nuORF;ENST00000358597.7_2_11:47490324-47493758:-|nuORF	ENST00000395290.6_1_11:47490324-47490525:-|nuORF	ENST00000395290.6_1_11:47490324-47490525:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	537.7257080078125	2	537.828255	1073.64196	-1.0383	-0.00055841	-0.55781	-0.00030001	-1.5961	-0.00085842	537.8274318190296	149.91	0.94484	149.91	149.06	150	0					68	41	2	0	0	0	0.7724	1	57138	57138		0.52476	0.52476	1	91595			5013	11469	3328	3372	4890	4890					0.10808147118518718
CRLSPRARY	9	Unmodified	_CRLSPRARY_					0	0	0			REV__ENSG00000178057|ENST00000326925|NDUFAF3	REV__ENSG00000178057|ENST00000326925|NDUFAF3	MULTI-SECPEP	A375_MHC_IP_R1	1	561.1853637695312	2	561.303467	1120.59238	-0.49963	-0.00028045	-0.58826	-0.00033019	-1.0879	-0.00061064	561.3030593491225	50.504	0.45895	50.504	50.254	50.713	0					12	8	2	0	0	0	0.53748	1	17888	17888		30.637	14.487	1	1490200	+		5014	21484	3329	3373	4891	4891					0.036908321624196105
CRLSPRARY	9	Unmodified	_CRLSPRARY_					0	0	0			REV__ENSG00000178057|ENST00000326925|NDUFAF3	REV__ENSG00000178057|ENST00000326925|NDUFAF3	MULTI-SECPEP	A375_MHC_IP_R2	2	561.6866455078125	2	561.303467	1120.59238	-0.88305	-0.00049566	0.19697	0.00011056	-0.68608	-0.0003851	561.8046917136503	49.693	0.56008	50.447	50.142	50.702	0.75406					14	10	2	0	0	0	0.53748	1	18732	18732		30.637	18.996	1	1323600	+		5015	21484	3329	3373	4892	4892					0.036908321624196105
CRPCCCCPCCC	11	Unmodified	_CRPCCCCPCCC_					0	0	0		KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	597.1961669921875	2	597.152616	1192.29068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.79	1	47.79	47.29	48.29	0								0	0	0	0.1636	1	16826	16826		0	0	1				5016	14240	3330	3374	4893	4893					-0.29777447165065496
CRPCCCCPCCC	11	Unmodified	_CRPCCCCPCCC_					0	0	0		KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	597.1849975585938	2	597.152616	1192.29068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.016	1	58.016	57.516	58.516	0								0	0	0	0.1636	1	20831	20831		0	0	1				5017	14240	3330	3374	4894	4894					-0.29777447165065496
CRPCCCCPCCC	11	Unmodified	_CRPCCCCPCCC_					0	0	0		KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	597.11474609375	2	597.152616	1192.29068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.077	1	74.077	73.577	74.577	0								0	0	0	0.1636	1	26982	26982		0	0	1				5018	14240	3330	3374	4895	4895					-0.29777447165065496
CRPCCCCPCCC	11	Unmodified	_CRPCCCCPCCC_					0	0	0		KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	597.2083129882812	2	597.152616	1192.29068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.928	1	87.928	87.428	88.428	0								0	0	0	0.1636	1	32272	32272		0	0	1				5019	14240	3330	3374	4896	4896					-0.29777447165065496
CRPCCCCPCCC	11	Unmodified	_CRPCCCCPCCC_					0	0	0		KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	597.205322265625	2	597.152616	1192.29068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.895	1	91.895	91.395	92.395	0								0	0	0	0.1636	1	33767	33767		0	0	1				5020	14240	3330	3374	4897	4897					-0.29777447165065496
CRPCCCCPCCC	11	Unmodified	_CRPCCCCPCCC_					0	0	0		KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	597.3857421875	2	597.152616	1192.29068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.325	1	99.325	98.825	99.825	0								0	0	0	0.1636	1	36487	36487		0	0	1				5021	14240	3330	3374	4898	4898					-0.29777447165065496
CRPCCCCPCCC	11	Unmodified	_CRPCCCCPCCC_					0	0	0		KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	597.1674194335938	2	597.152616	1192.29068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.829	1	69.564	69.064	70.064	0.73511								0	0	0	0.1636	1	26081	26081		0	0	1				5022	14240	3330	3374	4899	4899					-0.29777447165065496
CRPCCCCPCCC	11	Unmodified	_CRPCCCCPCCC_					0	0	0		KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	597.3001098632812	2	597.152616	1192.29068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.65	1	105.41	104.91	105.91	0.76308								0	0	0	0.1636	1	39591	39591		0	0	1				5023	14240	3330	3374	4900	4900					-0.29777447165065496
CRPCCCCPCCC	11	Unmodified	_CRPCCCCPCCC_					0	0	0		KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	597.0889282226562	2	597.152616	1192.29068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.69	1	107.45	106.95	107.95	0.75977								0	0	0	0.1636	1	40322	40322		0	0	1				5024	14240	3330	3374	4901	4901					-0.29777447165065496
CRPCCCCPCCC	11	Unmodified	_CRPCCCCPCCC_					0	0	0		KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	597.1328735351562	2	597.152616	1192.29068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.18	1	108.93	108.43	109.43	0.75436								0	0	0	0.1636	1	40853	40853		0	0	1				5025	14240	3330	3374	4902	4902					-0.29777447165065496
CRPRRLRRRWF	11	Unmodified	_CRPRRLRRRWF_					0	0	0		ENST00000574110.5_1_19:30433210-30433438:+|nuORF	ENST00000574110.5_1_19:30433210-30433438:+|nuORF	ENST00000574110.5_1_19:30433210-30433438:+|nuORF	MSMS	A375_MHC_IP_R2	2	534.6355590820312	3	534.644266	1600.91097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.931	1	36.694	36.194	37.194	0.76338								0	0	0	0.16358	1	13055	13055		0.08335	0	1				5026	13628	3331	3375	4903	4903					0.13455098858389647
CRPRRSALV	9	Unmodified	_CRPRRSALV_					0	0	0		ENST00000375736.8_2_13:111806157-111857643:+|nuORF	ENST00000375736.8_2_13:111806157-111857643:+|nuORF	ENST00000375736.8_2_13:111806157-111857643:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	529.7796020507812	2	529.30601	1056.59747	-0.6146	-0.00032531	-0.91439	-0.00048399	-1.529	-0.0008093	529.3055694447412	87.421	0.66382	87.421	87.083	87.747	0					25	12	3	0	0	0	0.4867	1	31991	31991		20.454	0.039092	1	6148500			5027	11276	3332	3376	4904	4904					0.0714313602504717
CRQPYCCCCC	10	Unmodified	_CRQPYCCCCC_					0	0	0		ENST00000377988.6_1_9:35829886-35834472:+|nuORF	ENST00000377988.6_1_9:35829886-35834472:+|nuORF	ENST00000377988.6_1_9:35829886-35834472:+|nuORF	MSMS	A375_MHC_IP_R1	1	591.1904907226562	2	591.178003	1180.34145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.307	1	53.307	52.807	53.807	0								0	0	0	0.15591	1	18999	18999		1.6526	0	1				5028	11304	3333	3377	4905	4905					-0.24150458524218266
CRRNRRFFHDF	11	Unmodified	_CRRNRRFFHDF_					0	0	0		ENSG00000196131|ENST00000341702|VN1R2	ENSG00000196131|ENST00000341702|VN1R2	ENSG00000196131|ENST00000341702|VN1R2	MSMS	A375_MHC_IP_R2	2	518.6529541015625	3	518.593349	1552.75822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.548	1	87.281	86.781	87.781	0.733								0	0	0	0.16351	1	32914	32914		0.45452	0.087843	1				5029	9001	3334	3378	4906	4906					0.003948586711203461
CRRQQRRRRRR	11	Unmodified	_CRRQQRRRRRR_					0	0	0			REV__ENST00000397992.5_1_16:72984846-73092758:-|nuORF	REV__ENST00000397992.5_1_16:72984846-73092758:-|nuORF	MSMS	A375_MHC_IP_R2	2	542.8062744140625	3	542.989207	1625.94579	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.985	1	99.745	99.245	100.25	0.75977								0	0	0	0.1636	1	37550	37550		0	0	1		+		5030	24368	3335	3379	4907	4907					0.1578573471904292
CRRSRQPDP	9	Unmodified	_CRRSRQPDP_					0	0	0			REV__nc|ENSG00000105290|P51693|APLP1	REV__nc|ENSG00000105290|P51693|APLP1	MULTI-SECPEP	A375_MHC_IP_R1	1	372.61322021484375	3	372.189329	1113.54616	0.52447	0.0001952	-1.2261	-0.00045634	-0.70163	-0.00026114	372.18890040003095	42.664	0.55655	42.664	42.487	43.043	0					13	10	2	0	0	0	0.79191	1	14892	14892		2.086	1.0145	1	765070	+		5031	17370	3336	3380	4908	4908					-0.006072327396623223
CRRWRYWEYWS	11	Unmodified	_CRRWRYWEYWS_					0	0	0		ENST00000299314.11_1_12:102159966-102161843:-|nuORF	ENST00000299314.11_1_12:102159966-102161843:-|nuORF	ENST00000299314.11_1_12:102159966-102161843:-|nuORF	MSMS	A375_MHC_IP_R1	1	845.7904052734375	2	845.888426	1689.7623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.8	1	125.8	125.3	126.3	0								0	0	0	0.16354	1	47949	47949		0.30703	0.30703	1				5032	10527	3337	3381	4909	4909					-0.05499096625817401
CRTLRKDQVE	10	Unmodified	_CRTLRKDQVE_					0	0	0		ENSG00000111911|ENST00000229633|HINT3	ENSG00000111911|ENST00000229633|HINT3	ENSG00000111911|ENST00000229633|HINT3	MSMS	A375_MHC_IP_R1	1	416.6224365234375	3	416.555678	1246.6452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.001	1	36.001	35.501	36.501	0								0	0	0	0.15225	1	12015	12015		13.519	3.7544	1				5033	3041	3338	3382	4910	4910					0.0317474543460321
CRTSTKRDEPN	11	Unmodified	_CRTSTKRDEPN_					0	0	0			REV__CRISP2|p.D84N|3|0.29|ENSG00000124490|chr6:49699825-49699825|C/T|missense_variant	REV__CRISP2|p.D84N|3|0.29|ENSG00000124490|chr6:49699825-49699825|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	436.6094665527344	3	436.210459	1305.60955	-0.61924	-0.00027012	-0.23515	-0.00010258	-0.85439	-0.0003727	436.21016728727096	21.59	0.40729	22.21	21.928	22.336	0.61932					11	7	2	0	0	0	0.72964	1	6808	6808		9.2438	3.8411	1	1807200	+		5034	15917	3339	3383	4911	4911					-0.031033368130692907
CRWDKRRWRKI	11	Unmodified	_CRWDKRRWRKI_					0	0	0		nc|ENSG00000168539|P11229-2|CHRM1;ENSG00000168539|ENST00000306960|CHRM1	nc|ENSG00000168539|P11229-2|CHRM1	nc|ENSG00000168539|P11229-2|CHRM1	MULTI-SECPEP	A375_MHC_IP_R1	1	534.6480102539062	3	534.968527	1601.88375	-0.76447	-0.00040897	1.1127	0.00059527	0.34825	0.0001863	534.9691083323595	76.904	0.61252	76.904	76.622	77.235	0					22	11	3	0	0	0	1.001	1	28110	28110		0.50596	0.41111	1	3382000			5035	7317	3340	3384	4912	4912					0.10688570527349839
CRWKFFARGR	10	Unmodified	_CRWKFFARGR_					0	0	0			REV__nc|ENSG00000084234|Q06481-6|APLP2	REV__nc|ENSG00000084234|Q06481-6|APLP2	MULTI-SECPEP	A375_MHC_IP_R2	2	443.639404296875	3	442.904864	1325.69276	-0.63775	-0.00028246	0.86894	0.00038486	0.23118	0.00010239	442.90527144725235	19.226	0.50439	19.829	19.583	20.088	0.60308					20	9	3	0	0	0	0.93578	1	5898	5898		8.9762	8.9762	1	5633400	+		5036	27126	3341	3385	4913	4913					0.04294489216067632
CRYGNIAV	8	Unmodified	_CRYGNIAV_					0	0	0		ENST00000265036.9_1_5:59982930-59995985:-|nuORF	ENST00000265036.9_1_5:59982930-59995985:-|nuORF	ENST00000265036.9_1_5:59982930-59995985:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	448.6270446777344	2	448.226362	894.438172	-0.12224	-5.4792E-05	1.1209	0.00050242	0.99865	0.00044762	448.22680864671287	95.982	0.65981	95.982	95.716	96.376	0					18	12	3	0	0	0	0.72761	1	35284	35284		26.341	1.6674	1	1966600			5037	10344	3342	3386	4914	4914					-0.013269973229398602
CSCTCRSL	8	Unmodified	_CSCTCRSL_					0	0	0			REV__nc|ENSG00000168477|P22105-1|TNXB	REV__nc|ENSG00000168477|P22105-1|TNXB	MULTI-MSMS	A375_MHC_IP_R2	2	437.07537841796875	2	436.674791	871.335028	-0.87302	-0.00038123	1.4994	0.00065477	0.62642	0.00027354	436.6758792564595	36.803	0.50751	37.574	37.359	37.867	0.7709					15	9	2	0	0	0	0.77603	1	13481	13481		9.3474	0	1	2417100	+		5038	20858	3343	3387	4915	4915					-0.10578569097401669
CSCTCRSL	8	Unmodified	_CSCTCRSL_					0	0	0			REV__nc|ENSG00000168477|P22105-1|TNXB	REV__nc|ENSG00000168477|P22105-1|TNXB	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	436.674791	871.335028	-0.87302	-0.00038123	1.4994	0.00065477	0.62642	0.00027354	436.6758792564595	36.803	0.50751	37.574	37.359	37.867	0.7709	-0.037824	2.7359E-05	NaN	9.3474	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2417100	+		5039	20858	3343	3387							-0.10578569097401669
CSDEECSYCC	10	Unmodified	_CSDEECSYCC_					0	0	0			REV__ENSG00000117983|ENST00000529681|MUC5B	REV__ENSG00000117983|ENST00000529681|MUC5B	MSMS	A375_MHC_IP_R2	2	571.1716918945312	2	571.150685	1140.28682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.616	1	63.359	62.859	63.859	0.74263								0	0	0	0.15642	1	23735	23735		0	0	1		+		5040	18026	3344	3388	4916	4916					-0.2777147559027071
CSFRKLRPPPP	11	Unmodified	_CSFRKLRPPPP_					0	0	0			REV__AluSx_dup37265|chr6:41933345-41933641:+|1.0835245921448011|0.326388098022754|1.73|472.0|12|1|anti-sense	REV__AluSx_dup37265|chr6:41933345-41933641:+|1.0835245921448011|0.326388098022754|1.73|472.0|12|1|anti-sense	MSMS	A375_MHC_IP_R2	2	649.4133911132812	2	649.363524	1296.7125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.646	1	75.384	74.884	75.884	0.73752								0	0	0	0.16249	1	28333	28333		5.7319	0.83484	1		+		5041	15377	3345	3389	4917	4917					0.0760082043618695
CSGWNFLAM	9	Unmodified	_CSGWNFLAM_					0	0	0		ENST00000535200.1_1_12:120648894-120650312:+|nuORF	ENST00000535200.1_1_12:120648894-120650312:+|nuORF	ENST00000535200.1_1_12:120648894-120650312:+|nuORF	MSMS	A375_MHC_IP_R1	1	514.7012329101562	2	514.720055	1027.42556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.106	1	64.106	63.606	64.606	0								0	0	0	0.15486	1	23188	23188		11.64	0.81637	1				5042	13224	3346	3390	4918	4918					-0.08705776777492247
CSHEALFQ	8	Unmodified	_CSHEALFQ_					0	0	0		ENSG00000144596|ENST00000621039|GRIP2;nc|ENSG00000144596|Q9C0E4-2|GRIP2;ENST00000422481.5_1_3:14563134-14563311:-|nuORF	ENSG00000144596|ENST00000621039|GRIP2	ENSG00000144596|ENST00000621039|GRIP2	MSMS	A375_MHC_IP_R1	1	467.6659240722656	2	467.708002	933.401452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.784	1	35.784	35.284	36.284	0								0	0	0	0.16876	1	11928	11928		7.9102	0	1				5043	5497	3347	3391	4919	4919					-0.06791293939500065
CSIETEYCTC	10	Unmodified	_CSIETEYCTC_					0	0	0			REV__ENSG00000263639|ENST00000582163|MSMB	REV__ENSG00000263639|ENST00000582163|MSMB	MULTI-MSMS	A375_MHC_IP_R1	1	576.6061401367188	2	576.206318	1150.39808	-0.0098374	-5.6683E-06	-0.088306	-5.0882E-05	-0.098143	-5.6551E-05	576.2062365421303	70.185	0.61376	70.185	70.034	70.648	0					15	11	2	0	0	0	0.71245	1	25523	25523		6.7232	2.3939	1	1152500	+		5044	22921	3348	3392	4920	4920					-0.1711009289069807
CSIETEYCTC	10	Unmodified	_CSIETEYCTC_					0	0	0			REV__ENSG00000263639|ENST00000582163|MSMB	REV__ENSG00000263639|ENST00000582163|MSMB	MULTI-MATCH	A375_MHC_IP_R2	2		2	576.206318	1150.39808	-0.10283	-5.9248E-05	-0.080507	-4.6388E-05	-0.18333	-0.00010564	576.2062230907985	69.794	0.40819	70.528	70.335	70.743	0.73421	0.17184	6.8172E-06	NaN	6.7232	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1342600	+		5045	22921	3348	3392							-0.1711009289069807
CSKTWPFSQ	9	Unmodified	_CSKTWPFSQ_					0	0	0		ENST00000473429.5_1_1:110591964-110592183:+|nuORF	ENST00000473429.5_1_1:110591964-110592183:+|nuORF	ENST00000473429.5_1_1:110591964-110592183:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	542.1848754882812	2	542.250034	1082.48552	-0.60989	-0.00033071	1.1429	0.00061975	0.53303	0.00028904	542.2491327833551	64.065	0.1517	64.065	63.939	64.09	0					4	2	2	0	0	0	0.51106	1	23173	23173		19.257	1.1106	1	654580			5046	12391	3349	3393	4921	4921					-0.05242762842613047
CSQSNQLNPE	10	Unmodified	_CSQSNQLNPE_					0	0	0		TRPM6|p.D1606N|1|0.39|ENSG00000119121|chr9:74755443-74755443|C/T|missense_variant	TRPM6|p.D1606N|1|0.39|ENSG00000119121|chr9:74755443-74755443|C/T|missense_variant	TRPM6|p.D1606N|1|0.39|ENSG00000119121|chr9:74755443-74755443|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	560.177490234375	2	560.240395	1118.46624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.282	1	86.018	85.518	86.518	0.73601								0	0	0	0.15265	1	32420	32420		12.241	2.8575	1				5047	30081	3350	3394	4922	4922					-0.08825763924164676
CSWPCYTSRE	10	Unmodified	_CSWPCYTSRE_					0	0	0			REV__ENST00000488833.1_1_2:220092516-220093771:-|nuORF	REV__ENST00000488833.1_1_2:220092516-220093771:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	616.6460571289062	2	616.247166	1230.47978	-0.64607	-0.00039814	-0.83546	-0.00051485	-1.4815	-0.00091299	616.2466394299892	41.65	0.71511	41.65	41.317	42.032	0					42	13	4	0	0	0	0.70496	1	14331	14331		10.074	1.9184	1	17400000	+		5048	25362	3351	3395	4923	4923					-0.12624229416610433
CTAGKRCPNS	10	Unmodified	_CTAGKRCPNS_					0	0	0			REV__ENSG00000134250|ENST00000256646|NOTCH2	REV__ENSG00000134250|ENST00000256646|NOTCH2	MULTI-MSMS	A375_MHC_IP_R1	1	519.6361083984375	2	518.736768	1035.45898	-0.4772	-0.00024754	1.3754	0.00071349	0.89824	0.00046595	518.7382021997137	34.835	3.549	34.835	32.535	36.084	0					150	69	3	0	0	0	0.72078	1	10988	10988		2.9952	0.41776	1	93373000	+		5049	18763	3352	3396	4924	4924					-0.057327750055947035
CTCCCCMGWW	10	Unmodified	_CTCCCCMGWW_					0	0	0		nc|ENSG00000112212|Q5TGU0-2|TSPO2	nc|ENSG00000112212|Q5TGU0-2|TSPO2	nc|ENSG00000112212|Q5TGU0-2|TSPO2	MSMS	A375_MHC_IP_R2	2	598.2107543945312	2	598.169646	1194.32474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.014	1	94.759	94.259	95.259	0.74474								0	0	0	0.15628	1	35734	35734		0.45834	0	1				5050	14549	3353	3397	4925	4925					-0.2646495941014564
CTFATFVNQDF	11	Unmodified	_CTFATFVNQDF_					0	0	0			REV__nc|ENSG00000101311|Q9BQL6-3|FERMT1	REV__nc|ENSG00000101311|Q9BQL6-3|FERMT1	MSMS	A375_MHC_IP_R2	2	646.6828002929688	2	646.784438	1291.55432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.184	1	65.922	65.422	66.422	0.73811								0	0	0	0.16138	1	24714	24714		11.495	1.4208	1		+		5051	17158	3354	3398	4926	4926					-0.07979143333568572
CTGCCGDENL	10	Unmodified	_CTGCCGDENL_					0	0	0		ENST00000555234.1_1_14:75415208-75421922:-|nuORF;ENST00000556939.5_1_14:75415208-75421945:-|nuORF;nc|ENSG00000119630|P49763-2|PGF;ENSG00000119630|ENST00000555567|PGF;nc|ENSG00000119630|P49763|PGF;nc|ENSG00000119630|P49763-4|PGF	ENST00000555234.1_1_14:75415208-75421922:-|nuORF	ENST00000555234.1_1_14:75415208-75421922:-|nuORF	MSMS	A375_MHC_IP_R1	1	507.6666564941406	2	507.669902	1013.32525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.373	1	77.373	76.873	77.873	0								0	0	0	0.1552	1	28225	28225		3.9444	0.66309	1				5052	3606	3355	3399	4927	4927					-0.1808780189345498
CTGTLLLLER	10	Unmodified	_CTGTLLLLER_					0	0	0			REV__ENST00000493544.1_1_2:242054361-242072488:-|nuORF	REV__ENST00000493544.1_1_2:242054361-242072488:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	373.9460144042969	3	373.54612	1117.61653	0.39281	0.00014673	-0.55187	-0.00020615	-0.15907	-5.9419E-05	373.5458707897058	41.806	0.46056	42.581	42.401	42.862	0.77451					12	8	2	0	0	0	0.68638	1	15566	15566		9.2438	0	1	2543300	+		5053	17907	3356	3400	4928	4928					0.06242627805431766
CTIDEVRY	8	Unmodified	_CTIDEVRY_					0	0	0			REV__ENSG00000182223|ENST00000327939|ZAR1	REV__ENSG00000182223|ENST00000327939|ZAR1	MULTI-SECPEP	A375_MHC_IP_R1	1	500.1337890625	2	499.734217	997.453881	-0.64958	-0.00032462	-0.13004	-6.4988E-05	-0.77963	-0.00038961	499.7343002032285	36.657	0.86183	36.657	36.084	36.945	0					21	16	2	0	0	0	0.85715	1	12312	12312		22.736	0	1	2057700	+		5054	21679	3357	3401	4929	4929					-0.04494755596545019
CTKCDEAESD	10	Unmodified	_CTKCDEAESD_					0	0	0			REV__nc|ENSG00000167608|Q7Z404-1|TMC4	REV__nc|ENSG00000167608|Q7Z404-1|TMC4	MSMS	A375_MHC_IP_R1	1	550.6754150390625	2	550.697171	1099.37979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.366	1	80.366	79.866	80.866	0								0	0	0	0.15531	1	29347	29347		3.5965	0.70727	1		+		5055	20776	3358	3402	4930	4930					-0.1659251154105732
CTKEMEFKCML	11	Unmodified	_CTKEMEFKCML_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76423133-76435249:-|nuORF	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MSMS	A375_MHC_IP_R1	1	455.2670593261719	3	454.869	1361.58517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.978	1	16.978	16.478	17.478	0								0	0	0	0.16352	1	3973	3973		0.40827	0.24894	1				5056	8855	3359	3403	4931	4931					-0.08115772606811333
CTLELPPQVY	10	Unmodified	_CTLELPPQVY_					0	0	0			REV__nc|ENSG00000122507|Q3SYG4-6|BBS9	REV__nc|ENSG00000122507|Q3SYG4-6|BBS9	MULTI-SECPEP	A375_MHC_IP_R2	2	388.258544921875	3	388.198609	1161.574	-0.41863	-0.00016251	-0.95528	-0.00037084	-1.3739	-0.00053335	388.1982988685578	19.004	0.3307	19.607	19.452	19.783	0.60308					17	6	4	0	0	0	0.91909	1	5857	5857		3.0723	0	1	32572000	+		5057	18211	3360	3404	4932	4932					-0.0003276732277299743
CTRESCVVSFY	11	Unmodified	_CTRESCVVSFY_					0	0	0		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103553216-103586042:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	MULTI-MSMS	A375_MHC_IP_R1	1	647.6831665039062	2	647.283748	1292.55294	-0.43799	-0.0002835	-0.43997	-0.00028479	-0.87796	-0.00056829	647.2831557109552	41.89	1.1671	41.89	41.674	42.841	0					36	22	3	0	0	0	0.71476	1	14484	14484		14.405	2.1647	1	5443000			5058	2865	3361	3405	4933	4933					-0.08163100693946035
CTSPLVREMS	10	Unmodified	_CTSPLVREMS_					0	0	0			REV__N4BP2|p.S724L|1|0.52|ENSG00000078177|chr4:40120282-40120282|C/T|missense_variant	REV__N4BP2|p.S724L|1|0.52|ENSG00000078177|chr4:40120282-40120282|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	561.6665649414062	2	561.767734	1121.52091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.167	1	71.167	70.667	71.667	0								0	0	0	0.15038	1	25851	25851		17.113	0	1		+		5059	27076	3362	3406	4934	4934					-0.03498468377097197
CTTIKVSKDGQ	11	Unmodified	_CTTIKVSKDGQ_					0	0	0		nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	MULTI-MSMS	A375_MHC_IP_R1	1	590.873291015625	2	590.305538	1178.59652	-0.078845	-4.6543E-05	2.5266	0.0014915	2.4477	0.0014449	590.3058264528269	107.71	0.61317	107.71	107.34	107.95	0					24	11	3	0	0	0	0.62223	1	39559	39559		21.59	1.1756	1	2908700			5060	3338	3363	3407	4935	4935					0.014368320748189944
CTTRAWTLI	9	Unmodified	_CTTRAWTLI_					0	0	0			REV__ENST00000540260.1_1_12:2904946-2905357:+|nuORF	REV__ENST00000540260.1_1_12:2904946-2905357:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	532.2127075195312	2	532.781502	1063.54845	-0.45254	-0.0002411	0.41236	0.0002197	-0.040176	-2.1405E-05	532.7815776204283	72.099	0.65857	72.099	71.866	72.524	0					18	12	2	0	0	0	0.73363	1	26129	26129		6.7232	0	1	1042400	+		5061	25949	3364	3408	4936	4936					0.019218029454577845
CTTRRTSGCW	10	Unmodified	_CTTRRTSGCW_					0	0	0			REV__ENST00000348956.6_1_14:103986846-103986924:-|nuORF	REV__ENST00000348956.6_1_14:103986846-103986924:-|nuORF	MSMS	A375_MHC_IP_R2	2	585.6824951171875	2	585.760775	1169.507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.936	1	60.683	60.183	61.183	0.74714								0	0	0	0.14983	1	22683	22683		18.146	1.0335	1		+		5062	23788	3365	3409	4937	4937					-0.07097701085535846
CTYRQPII	8	Unmodified	_CTYRQPII_					0	0	0			REV__ENST00000244051.2_1_20:49576777-49576906:+|nuORF	REV__ENST00000244051.2_1_20:49576777-49576906:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	497.6628112792969	2	497.262945	992.511337	-0.41467	-0.0002062	-0.18844	-9.3706E-05	-0.60311	-0.0002999	497.2629132376866	42.057	1.6762	42.057	41.266	42.942	0					40	32	3	0	0	0	0.66714	1	14542	14542		42.095	11.87	1	7260800	+		5063	23102	3366	3410	4938	4938					0.014781313996763856
CVAEPHSEV	9	Unmodified	_CVAEPHSEV_					0	0	0			REV__ENST00000306317.6_1_8:22006075-22006111:-|nuORF	REV__ENST00000306317.6_1_8:22006075-22006111:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	485.12945556640625	2	485.718567	969.422581	-0.5763	-0.00027992	-0.96764	-0.00047	-1.5439	-0.00074992	485.7178319058173	103.47	0.45823	104.23	103.99	104.45	0.76428					11	8	2	0	0	0	0.74651	1	39216	39216		8.5933	3.3626	1	776000	+		5064	23468	3367	3411	4939	4939					-0.06335328630643744
CVCCCFCSLHY	11	Unmodified	_CVCCCFCSLHY_					0	0	0			REV__ENSG00000162761|ENST00000342310|LMX1A	REV__ENSG00000162761|ENST00000342310|LMX1A	MSMS	A375_MHC_IP_R1	1	640.6737060546875	2	640.7231	1279.43165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.835	1	68.835	68.335	69.335	0								0	0	0	0.16297	1	24970	24970		3.2813	0.28607	1		+		5065	20305	3368	3412	4940	4940					-0.19689085924119354
CVCMNECAC	9	Unmodified	_CVCMNECAC_					0	0	0			REV__ENST00000537498.1_1_16:89114163-89119334:-|nuORF	REV__ENST00000537498.1_1_16:89114163-89119334:-|nuORF	MSMS	A375_MHC_IP_R2	2	488.1524963378906	2	488.146694	974.278835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.29	1	103.05	102.55	103.55	0.76428								0	0	0	0.15486	1	38761	38761		2.3027	0	1		+		5066	25926	3369	3413	4941	4941					-0.2093328132075385
CVDKGHLLLCH	11	Unmodified	_CVDKGHLLLCH_					0	0	0			REV__ENST00000603844.1_1_9:20823009-20862792:+|nuORF	REV__ENST00000603844.1_1_9:20823009-20862792:+|nuORF	MSMS	A375_MHC_IP_R2	2	619.3244018554688	2	619.312643	1236.61073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.185	1	90.917	90.417	91.417	0.7318								0	0	0	0.1623	1	34313	34313		6.7232	0	1		+		5067	26524	3370	3414	4942	4942					0.0018920602215075633
CVDKREELY	9	Unmodified	_CVDKREELY_					0	0	0			REV__ENST00000343855.5_1_7:150029108-150029612:+|nuORF	REV__ENST00000343855.5_1_7:150029108-150029612:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	578.1788940429688	2	577.779156	1153.54376	-0.16675	-9.6347E-05	-0.34047	-0.00019671	-0.50722	-0.00029306	577.7789642238247	63.82	0.51165	63.82	63.529	64.04	0					22	9	3	0	0	0	0.28475	1	23057	23057		39.957	17.221	1	3960100	+		5068	23754	3371	3415	4943	4943					-0.026871259879726495
CVEVGVRVEAF	11	Unmodified	_CVEVGVRVEAF_					0	0	0		ENSG00000172497|ENST00000307624|ACOT12	ENSG00000172497|ENST00000307624|ACOT12	ENSG00000172497|ENST00000307624|ACOT12	MULTI-SECPEP	A375_MHC_IP_R2	2	403.281494140625	3	403.209508	1206.60669	-0.29027	-0.00011704	0.94405	0.00038065	0.65378	0.00026361	403.5439214294336	23.364	0.6585	23.994	23.675	24.333	0.63014					24	12	4	0	0	0	0.9836	1	7455	7455		6.2344	0	1	3079100			5069	7715	3372	3416	4944	4944					0.01165439800047352
CVGCDSFCDCM	11	Unmodified	_CVGCDSFCDCM_					0	0	0			REV__ENSG00000145287|ENST00000311507|PLAC8	REV__ENSG00000145287|ENST00000311507|PLAC8	MULTI-MSMS	A375_MHC_IP_R1	1	591.700927734375	2	591.673273	1181.33199	-0.23414	-0.00013853	1.5645	0.00092565	1.3303	0.00078712	591.6732941162921	81.91	0.30429	81.91	81.758	82.062	0					7	5	2	0	0	0	0.73779	1	29981	29981		0.35063	0.35063	1	1783300	+		5070	19470	3373	3417	4945	4945					-0.25141948328769104
CVGNKINTEW	10	Unmodified	_CVGNKINTEW_					0	0	0			REV__nc|ENSG00000243667|Q96MX6-2|DNAAF10	REV__nc|ENSG00000243667|Q96MX6-2|DNAAF10	MULTI-MSMS	A375_MHC_IP_R1	1	582.17431640625	2	582.279323	1162.54409	-0.21929	-0.00012769	-1.1104	-0.00064655	-1.3297	-0.00077423	582.78103447151	55.319	0.61012	55.319	55.025	55.635	0					27	11	3	0	0	0	0.55789	1	19802	19802		24.021	7.0783	1	4558700	+		5071	22810	3374	3418	4946	4946					-0.030677062681206735
CVGNKINTEW	10	Unmodified	_CVGNKINTEW_					0	0	0			REV__nc|ENSG00000243667|Q96MX6-2|DNAAF10	REV__nc|ENSG00000243667|Q96MX6-2|DNAAF10	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	582.279323	1162.54409	-0.21929	-0.00012769	-1.1104	-0.00064655	-1.3297	-0.00077423	582.78103447151	55.319	0.61012	55.319	55.025	55.635	0	0	0	NaN	24.021	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4558700	+		5072	22810	3374	3418							-0.030677062681206735
CVGQCNNAQY	10	Unmodified	_CVGQCNNAQY_					0	0	0			REV__ENSG00000104899|ENST00000221496|AMH	REV__ENSG00000104899|ENST00000221496|AMH	MSMS	A375_MHC_IP_R1	1	550.1754760742188	2	550.218408	1098.42226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.258	1	59.258	58.758	59.758	0								0	0	0	0.15417	1	21311	21311		7.2892	1.5288	1		+		5073	17350	3375	3419	4947	4947					-0.12301071622164272
CVHQPSPEL	9	Unmodified	_CVHQPSPEL_					0	0	0		ENST00000357156.6_1_20:33128465-33128741:+|nuORF	ENST00000357156.6_1_20:33128465-33128741:+|nuORF	ENST00000357156.6_1_20:33128465-33128741:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	505.6416931152344	2	505.242209	1008.46987	-0.31148	-0.00015737	0.29477	0.00014893	-0.016705	-8.4399E-06	505.24281981038536	93.674	0.7608	93.674	93.329	94.09	0					27	14	3	0	0	0	0.11296	1	34412	34412		48.346	0	1	1519500			5074	10979	3376	3420	4948	4948					-0.03403049359644683
CVIAPICTSL	10	Unmodified	_CVIAPICTSL_					0	0	0			REV__ENSG00000243749|ENST00000373337|TMEM35B	REV__ENSG00000243749|ENST00000373337|TMEM35B	MULTI-SECPEP	A375_MHC_IP_R1	1	509.69036865234375	2	510.266838	1018.51912	-0.442	-0.00022554	1.8841	0.0009614	1.4421	0.00073586	510.7716876627879	57.671	0.30415	57.671	57.518	57.822	0					6	5	2	0	0	0	0.57563	1	20691	20691		32.305	0	1	596650	+		5075	22813	3377	3421	4949	4949					0.010605226049619887
CVKCEYPRK	9	Unmodified	_CVKCEYPRK_					0	0	0			REV__nc|ENSG00000181896|Q8IZC7-2|ZNF101	REV__nc|ENSG00000181896|Q8IZC7-2|ZNF101	MULTI-SECPEP	A375_MHC_IP_R2	2	376.6002197265625	3	375.8563	1124.54707	0.26982	0.00010141	-0.81006	-0.00030447	-0.54024	-0.00020305	376.19043024115115	27.723	0.35331	28.402	28.2	28.553	0.67857					10	6	2	0	0	0	0.71541	1	9435	9435		0.86438	0	1	1328200	+		5076	21669	3378	3422	4950	4950					-0.010221544149771944
CVKESHKFQRW	11	Unmodified	_CVKESHKFQRW_					0	0	0			REV__ENST00000520364.1_1_6:109309715-109314184:-|nuORF	REV__ENST00000520364.1_1_6:109309715-109314184:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	483.6468505859375	3	483.246956	1446.71904	-0.57916	-0.00027988	0.73858	0.00035692	0.15942	7.7038E-05	483.2472914181016	45.715	0.75568	46.48	46.15	46.906	0.76519					17	14	2	0	0	0	0.73612	1	17058	17058		3.0723	3.0723	1	18142000	+		5077	25697	3379	3423	4951	4951					0.013547135969020019
CVPELGEEVC	10	Unmodified	_CVPELGEEVC_					0	0	0			REV__nc|ENSG00000131781|P49326-3|FMO5	REV__nc|ENSG00000131781|P49326-3|FMO5	MULTI-MSMS	A375_MHC_IP_R2	2	539.1715698242188	2	539.233193	1076.45183	-0.66956	-0.00036105	1.0152	0.00054743	0.34565	0.00018638	539.2332729676431	43.682	0.50449	44.451	44.126	44.631	0.76909					13	9	2	0	0	0	0.71118	1	16242	16242		7.2892	0	1	1687700	+		5078	27227	3380	3424	4952	4952					-0.08333552396652522
CVPELGEEVC	10	Unmodified	_CVPELGEEVC_					0	0	0			REV__nc|ENSG00000131781|P49326-3|FMO5	REV__nc|ENSG00000131781|P49326-3|FMO5	MSMS	A375_MHC_IP_R2	2	539.1715698242188	2	539.233193	1076.45183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.455	1	55.205	54.705	55.705	0.75075								0	0	0	0.15158	1	20548	20548		14.838	2.3067	1		+		5079	27227	3380	3424	4953	4953					-0.08333552396652522
CVQALEYQL	9	Unmodified	_CVQALEYQL_					0	0	0			REV__nc|ENSG00000141013|O95995-2|GAS8	REV__nc|ENSG00000141013|O95995-2|GAS8	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1572875976562	2	533.765517	1065.51648	-0.86609	-0.00046229	-0.15754	-8.4091E-05	-1.0236	-0.00054638	533.7655064756096	86.416	0.60785	86.416	86.072	86.679	0					23	10	3	0	0	0	0.67483	1	31708	31708		20.454	5.6154	1	5548600	+		5080	19241	3381	3425	4954	4954					-0.013656095283522518
CVSIQSGLNLY	11	Unmodified	_CVSIQSGLNLY_					0	0	0			REV__nc|ENSG00000196208|Q4ZG55-4|GREB1	REV__nc|ENSG00000196208|Q4ZG55-4|GREB1	MULTI-SECPEP	A375_MHC_IP_R1	1	399.9645080566406	3	399.537513	1195.59071	-0.36968	-0.0001477	-1.7477	-0.00069827	-2.1174	-0.00084597	399.5359453183334	25.689	0.20359	25.689	25.562	25.765	0					5	3	2	0	0	0	0.98524	1	7499	7499		5.8681	0.46543	1	479490	+		5081	15732	3382	3426	4955	4955					0.0007373356315838464
CVVDKLYVV	9	Unmodified	_CVVDKLYVV_					0	0	0			REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF	REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	519.6884765625	2	519.288628	1036.5627	-0.45339	-0.00023544	0.26677	0.00013853	-0.18662	-9.6911E-05	519.2887679058645	96.724	0.55819	96.724	96.427	96.985	0					15	10	2	0	0	0	0.75164	1	35569	35569		9.3831	2.0939	1	1279200	+		5082	16437	3383	3427	4956	4956					0.04588455373709621
CVVDKLYVV	9	Unmodified	_CVVDKLYVV_					0	0	0			REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF	REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	519.288628	1036.5627	-0.58871	-0.00030571	-0.26235	-0.00013623	-0.85106	-0.00044194	519.288824596233	95.802	0.71108	96.553	96.195	96.906	0.75044	-0.085648	-0.00043479	NaN	9.3831	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1214300	+		5083	16437	3383	3427							0.04588455373709621
CWDDAEHNTNY	11	Unmodified	_CWDDAEHNTNY_					0	0	0			REV__ENSG00000152256|ENST00000282077|PDK1	REV__ENSG00000152256|ENST00000282077|PDK1	MSMS	A375_MHC_IP_R1	1	684.5010986328125	2	684.251491	1366.48843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.61	1	85.61	85.11	86.11	0								0	0	0	0.16297	1	31377	31377		3.2813	0	1		+		5084	19798	3384	3428	4957	4957					-0.18015584246404615
CWEPRKWRILF	11	Unmodified	_CWEPRKWRILF_					0	0	0			REV__ENST00000528563.5_1_19:46807167-46825077:+|nuORF	REV__ENST00000528563.5_1_19:46807167-46825077:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	512.343505859375	3	511.943096	1532.80746	-0.78872	-0.00040378	1.9116	0.00097863	1.1229	0.00057485	511.9438952980876	80.493	0.55962	81.238	80.961	81.52	0.74474					29	10	5	0	0	0	1.0004	1	30589	30589		1.2148	0	1	2591100	+		5085	25805	3385	3429	4958	4958					0.06236753907387538
CWEVPDGLY	9	Unmodified	_CWEVPDGLY_					0	0	0		PTPRH|p.P412L|1|0.44|ENSG00000080031|chr19:55200421-55200421|G/A|missense_variant	PTPRH|p.P412L|1|0.44|ENSG00000080031|chr19:55200421-55200421|G/A|missense_variant	PTPRH|p.P412L|1|0.44|ENSG00000080031|chr19:55200421-55200421|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	541.681396484375	2	541.236593	1080.45863	-0.77494	-0.00041943	-0.84784	-0.00045888	-1.6228	-0.00087831	541.237338222279	104.79	1.1698	105.55	105.11	106.28	0.76308					41	22	3	0	0	0	0.62719	1	39775	39775		13.508	0.46542	1	5487700			5086	15248	3386	3430	4959	4959					-0.07837871453784828
CWEWYWPRSVR	11	Unmodified	_CWEWYWPRSVR_					0	0	0		ENST00000409198.5_2_2:152506865-152507290:-|nuORF	ENST00000409198.5_2_2:152506865-152507290:-|nuORF	ENST00000409198.5_2_2:152506865-152507290:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	785.268310546875	2	784.366795	1566.71904	-0.47154	-0.00036986	0.13767	0.00010799	-0.33386	-0.00026187	784.3670596375214	55.11	0.76164	55.11	54.72	55.482	0					30	14	3	0	0	0	0.7362	1	19672	19672		2.9952	2.7262	1	6093200			5087	11626	3387	3431	4960	4960					-0.04165286403099344
CWEWYWPRSVR	11	Unmodified	_CWEWYWPRSVR_					0	0	0		ENST00000409198.5_2_2:152506865-152507290:-|nuORF	ENST00000409198.5_2_2:152506865-152507290:-|nuORF	ENST00000409198.5_2_2:152506865-152507290:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	784.7662353515625	2	784.366795	1566.71904	-1.2155	-0.0009534	0.40148	0.00031491	-0.81402	-0.00063849	784.8686759913368	54.406	0.65918	55.156	54.916	55.575	0.75075					30	12	4	0	0	0	0.7362	1	20522	20522		2.9952	0.26005	1	4803700			5088	11626	3387	3431	4961	4961					-0.04165286403099344
CWFLSVVL	8	Unmodified	_CWFLSVVL_					0	0	0			REV__ENST00000478190.3_2_2:148782796-148782865:+|nuORF	REV__ENST00000478190.3_2_2:148782796-148782865:+|nuORF	MSMS	A375_MHC_IP_R1	1	484.15789794921875	2	483.759507	965.50446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.71	1	117.71	117.21	118.21	0								0	0	0	0.16516	1	43260	43260		42.968	4.994	1		+		5089	25207	3388	3432	4962	4962					0.020328185191146986
CWFPGIGDFP	10	Unmodified	_CWFPGIGDFP_					0	0	0		ENST00000591278.5_1_19:9266676-9268567:+|nuORF	ENST00000591278.5_1_19:9266676-9268567:+|nuORF	ENST00000591278.5_1_19:9266676-9268567:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	570.1903686523438	2	569.754953	1137.49535	-0.48839	-0.00027826	-0.89938	-0.00051243	-1.3878	-0.00079069	569.7543412412622	25.778	0.35484	25.778	25.562	25.917	0					10	6	2	0	0	0	0.66712	1	7538	7538		15.847	5.0233	1	2531100			5090	13796	3389	3433	4963	4963					-0.06789574837216605
CWFPGIGDFP	10	Unmodified	_CWFPGIGDFP_					0	0	0		ENST00000591278.5_1_19:9266676-9268567:+|nuORF	ENST00000591278.5_1_19:9266676-9268567:+|nuORF	ENST00000591278.5_1_19:9266676-9268567:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	569.754953	1137.49535	-0.48839	-0.00027826	-0.89938	-0.00051243	-1.3878	-0.00079069	569.7543412412622	25.778	0.35484	25.778	25.562	25.917	0	-0.045408	0.00026358	NaN	15.847	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2531100			5091	13796	3389	3433							-0.06789574837216605
CWFPGIGDFP	10	Unmodified	_CWFPGIGDFP_					0	0	0		ENST00000591278.5_1_19:9266676-9268567:+|nuORF	ENST00000591278.5_1_19:9266676-9268567:+|nuORF	ENST00000591278.5_1_19:9266676-9268567:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	569.754953	1137.49535	-0.76098	-0.00043357	-1.3904	-0.00079221	-2.1514	-0.0012258	569.7543584066625	25.225	0.45911	25.869	25.668	26.128	0.64368	0.045408	-0.00029598	NaN	15.847	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2544200			5092	13796	3389	3433							-0.06789574837216605
CWRCCCCCCA	10	Unmodified	_CWRCCCCCCA_					0	0	0			REV__ENST00000519715.1_1_5:140012405-140013200:-|nuORF	REV__ENST00000519715.1_1_5:140012405-140013200:-|nuORF	MSMS	A375_MHC_IP_R2	2	577.1917114257812	2	577.153473	1152.29239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.53	1	95.274	94.774	95.774	0.74474								0	0	0	0.15642	1	35922	35922		0	0	1		+		5093	25688	3390	3434	4964	4964					-0.2776607008481733
CWVYSCWFIV	10	Unmodified	_CWVYSCWFIV_					0	0	0		nc|ENSG00000140612|P67812-3|SEC11A	nc|ENSG00000140612|P67812-3|SEC11A	nc|ENSG00000140612|P67812-3|SEC11A	MULTI-MSMS	A375_MHC_IP_R1	1	653.6925659179688	2	653.293388	1304.57222	-0.095926	-6.2668E-05	-0.72665	-0.00047472	-0.82258	-0.00053739	653.2927912867005	44.445	0.40979	44.445	44.216	44.626	0					14	7	3	0	0	0	0.7178	1	15540	15540		4.3292	0.73274	1	3393000			5094	14642	3391	3435	4965	4965					-0.06788099612413134
CWVYSCWFIV	10	Unmodified	_CWVYSCWFIV_					0	0	0		nc|ENSG00000140612|P67812-3|SEC11A	nc|ENSG00000140612|P67812-3|SEC11A	nc|ENSG00000140612|P67812-3|SEC11A	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	653.293388	1304.57222	-0.095926	-6.2668E-05	-0.72665	-0.00047472	-0.82258	-0.00053739	653.2927912867005	44.445	0.40979	44.445	44.216	44.626	0	0.020289	0.00034644	NaN	4.3292	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3393000			5095	14642	3391	3435							-0.06788099612413134
CWYDFAGSW	9	Unmodified	_CWYDFAGSW_					0	0	0			REV__ENSG00000102098|ENST00000251900|SCML2	REV__ENSG00000102098|ENST00000251900|SCML2	MULTI-MSMS	A375_MHC_IP_R1	1	568.1210327148438	2	567.72111	1133.42767	-0.28721	-0.00016306	0.49308	0.00027993	0.20587	0.00011688	567.7212815809178	63.224	0.87207	63.224	62.863	63.735	0					31	16	3	0	0	0	0.68216	1	22814	22814		8.5933	8.5933	1	3098700	+		5096	17205	3392	3436	4966	4966					-0.13371024768025563
CWYDFAGSW	9	Unmodified	_CWYDFAGSW_					0	0	0			REV__ENSG00000102098|ENST00000251900|SCML2	REV__ENSG00000102098|ENST00000251900|SCML2	MULTI-SECPEP	A375_MHC_IP_R1	1	567.2091674804688	2	567.72111	1133.42767	-0.28721	-0.00016306	0.49308	0.00027993	0.20587	0.00011688	567.7212815809178	63.224	0.87207	63.224	62.863	63.735	0					31	16	3	0	0	0	0.78348	1	22768	22768		4.3292	4.3292	1	3098700	+		5097	17205	3392	3436	4967	4967					-0.13371024768025563
CWYDFAGSW	9	Unmodified	_CWYDFAGSW_					0	0	0			REV__ENSG00000102098|ENST00000251900|SCML2	REV__ENSG00000102098|ENST00000251900|SCML2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	567.72111	1133.42767	-0.36751	-0.00020864	-0.087303	-4.9564E-05	-0.45481	-0.00025821	567.7209958357241	62.831	0.91011	63.574	63.13	64.04	0.74263	0.17482	-0.0004184	NaN	8.5933	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3088900	+		5098	17205	3392	3436							-0.13371024768025563
CYCCCCCI	8	Unmodified	_CYCCCCCI_					0	0	0			REV__ENST00000242728.4_1_12:26273527-26273698:-|nuORF	REV__ENST00000242728.4_1_12:26273527-26273698:-|nuORF	MSMS	A375_MHC_IP_R1	1	457.19732666015625	2	457.113809	912.213064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.602	1	98.602	98.102	99.102	0								0	0	0	0.16876	1	36226	36226		0.79363	0	1		+		5099	23100	3393	3437	4968	4968					-0.246553937673184
CYCCCCCI	8	Unmodified	_CYCCCCCI_					0	0	0			REV__ENST00000242728.4_1_12:26273527-26273698:-|nuORF	REV__ENST00000242728.4_1_12:26273527-26273698:-|nuORF	MSMS	A375_MHC_IP_R2	2	457.1972961425781	2	457.113809	912.213064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.485	1	98.241	97.741	98.741	0.75586								0	0	0	0.16876	1	37000	37000		0.79363	0	1		+		5100	23100	3393	3437	4969	4969					-0.246553937673184
CYCCCCCI	8	Unmodified	_CYCCCCCI_					0	0	0			REV__ENST00000242728.4_1_12:26273527-26273698:-|nuORF	REV__ENST00000242728.4_1_12:26273527-26273698:-|nuORF	MSMS	A375_MHC_IP_R2	2	457.162841796875	2	457.113809	912.213064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.804	1	100.57	100.07	101.07	0.76278								0	0	0	0.16876	1	37856	37856		2.8892	0	1		+		5101	23100	3393	3437	4970	4970					-0.246553937673184
CYCCCCLCCC	10	Unmodified	_CYCCCCLCCC_					0	0	0		ENSG00000101152|ENST00000360864|DNAJC5;nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	MSMS	A375_MHC_IP_R1	1	560.165771484375	2	560.122993	1118.23143	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.645	1	89.645	89.145	90.145	0								0	0	0	0.15642	1	32933	32933		0	0	1				5102	2256	3394	3438	4971	4971					-0.3229534317924845
CYCDCEWHWCC	11	Unmodified	_CYCDCEWHWCC_					0	0	0			REV__nc|ENSG00000198788|Q02817|MUC2	REV__nc|ENSG00000198788|Q02817|MUC2	MSMS	A375_MHC_IP_R1	1	725.5625610351562	2	725.710721	1449.40689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.999	1	83.999	83.499	84.499	0								0	0	0	0.1636	1	30755	30755		0	0	1		+		5103	27450	3395	3439	4972	4972					-0.29983765797510387
CYCDCEWHWCC	11	Unmodified	_CYCDCEWHWCC_					0	0	0			REV__nc|ENSG00000198788|Q02817|MUC2	REV__nc|ENSG00000198788|Q02817|MUC2	MSMS	A375_MHC_IP_R1	1	725.61376953125	2	725.710721	1449.40689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.47	1	119.47	118.97	119.97	0								0	0	0	0.1636	1	44161	44161		0	0	1		+		5104	27450	3395	3439	4973	4973					-0.29983765797510387
CYCMSLQAQY	10	Unmodified	_CYCMSLQAQY_					0	0	0		ENST00000427859.5_1_1:239870879-239871044:-|nuORF	ENST00000427859.5_1_1:239870879-239871044:-|nuORF	ENST00000427859.5_1_1:239870879-239871044:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	605.2024536132812	2	605.240495	1208.46644	-0.42139	-0.00025504	-0.23182	-0.00014031	-0.65321	-0.00039535	605.2402529655457	48.298	0.8112	49.055	48.879	49.69	0.75737					23	15	3	0	0	0	0.70329	1	18303	18303		10.824	0	1	2780500			5105	11829	3396	3440	4974	4974					-0.12945803520187837
CYDPIIDSW	9	Unmodified	_CYDPIIDSW_					0	0	0		nc|ENSG00000117153|Q53G59-2|KLHL12;ENSG00000117153|ENST00000367261|KLHL12	nc|ENSG00000117153|Q53G59-2|KLHL12	nc|ENSG00000117153|Q53G59-2|KLHL12	MSMS	A375_MHC_IP_R2	2	556.1085815429688	2	556.241875	1110.4692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.383	1	96.134	95.634	96.634	0.75045								0	0	0	0.15283	1	36234	36234		16.942	2.3606	1				5106	3461	3397	3441	4975	4975					-0.08161888799349981
CYESDTDIY	9	Unmodified	_CYESDTDIY_					0	0	0		ENSG00000189269|ENST00000317749|DRICH1	ENSG00000189269|ENST00000317749|DRICH1	ENSG00000189269|ENST00000317749|DRICH1	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1094360351562	2	554.710605	1107.40666	-0.99402	-0.00055139	-1.6322	-0.00090541	-2.6262	-0.0014568	554.7102917094995	71.22	0.70829	71.954	71.656	72.364	0.73421					30	12	3	0	0	0	0.69504	1	27025	27025		18.135	4.2289	1	6273200			5107	8976	3398	3442	4976	4976					-0.1427507965820496
CYILILEEM	9	Unmodified	_CYILILEEM_					0	0	0			REV__ACAD11|p.S290L|1|0.43|ENSG00000240303|chr3:132630531-132630531|G/A|missense_variant	REV__ACAD11|p.S290L|1|0.43|ENSG00000240303|chr3:132630531-132630531|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	375.92132568359375	3	376.188945	1125.545	0.22055	8.297E-05	2.1385	0.00080448	2.3591	0.00088745	376.5239368036544	27.665	0.40472	27.665	27.381	27.786	0					11	7	2	0	0	0	0.71541	1	8353	8353		11.495	0	1	680870	+		5108	15292	3399	3443	4977	4977					-0.012746279434395547
CYLSPEINY	9	Unmodified	_CYLSPEINY_					0	0	0			REV__ENSG00000027001|ENST00000382172|MIPEP	REV__ENSG00000027001|ENST00000382172|MIPEP	MULTI-MSMS	A375_MHC_IP_R1	1	551.232177734375	2	551.2497	1100.48485	-0.26688	-0.00014712	-3.2909	-0.0018141	-3.5578	-0.0019612	551.7508524664797	49.666	0.61095	49.666	49.387	49.998	0					23	11	3	0	0	0	0.63811	1	17622	17622		12.532	2.4576	1	3208400	+		5109	16290	3400	3444	4978	4978					-0.06137602282319676
CYNAALTYMPS	11	Unmodified	_CYNAALTYMPS_					0	0	0		nc|ENSG00000122591|Q9BYI3-3|HYCC1;ENSG00000122591|ENST00000432176|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	MULTI-SECPEP	A375_MHC_IP_R1	1	617.1319580078125	2	617.267567	1232.52058	-0.30295	-0.000187	-0.48229	-0.0002977	-0.78524	-0.0004847	617.7686758334637	102.98	0.65994	102.98	102.51	103.17	0					13	12	2	0	0	0	0.98748	1	37816	37816		5.2969	0	1	1107300			5110	14572	3401	3445	4979	4979					-0.08637888096973256
CYNGMCQYY	9	Unmodified	_CYNGMCQYY_					0	0	0		nc|ENSG00000168615|Q13443-2|ADAM9;ENSG00000168615|ENST00000487273|ADAM9	nc|ENSG00000168615|Q13443-2|ADAM9	nc|ENSG00000168615|Q13443-2|ADAM9	MSMS	A375_MHC_IP_R2	2	572.6874389648438	2	572.698463	1143.38237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.053	1	60.8	60.3	61.3	0.74714								0	0	0	0.15486	1	22728	22728		2.3027	0	1				5111	7327	3402	3446	4980	4980					-0.18358334617073524
CYNGMCQYY	9	Unmodified	_CYNGMCQYY_					0	0	0		nc|ENSG00000168615|Q13443-2|ADAM9;ENSG00000168615|ENST00000487273|ADAM9	nc|ENSG00000168615|Q13443-2|ADAM9	nc|ENSG00000168615|Q13443-2|ADAM9	MSMS	A375_MHC_IP_R2	2	572.678955078125	2	572.698463	1143.38237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.47	1	87.203	86.703	87.703	0.733								0	0	0	0.15486	1	32884	32884		5.2307	0.33366	1				5112	7327	3402	3446	4981	4981					-0.18358334617073524
CYSCPWDLF	9	Unmodified	_CYSCPWDLF_					0	0	0		ENST00000458301.5_1_16:90046667-90051003:+|nuORF	ENST00000458301.5_1_16:90046667-90051003:+|nuORF	ENST00000458301.5_1_16:90046667-90051003:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	567.626220703125	2	567.225171	1132.43579	-0.23474	-0.00013315	0.28899	0.00016392	0.054249	3.0771E-05	567.7262114235635	111.05	0.61348	111.05	110.7	111.31	0					20	11	2	0	0	0	0.69504	1	40736	40736		18.135	10.846	1	1574700			5113	12147	3403	3447	4982	4982					-0.12513213842930782
CYSCPWDLF	9	Unmodified	_CYSCPWDLF_					0	0	0		ENST00000458301.5_1_16:90046667-90051003:+|nuORF	ENST00000458301.5_1_16:90046667-90051003:+|nuORF	ENST00000458301.5_1_16:90046667-90051003:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	567.225171	1132.43579	-0.2247	-0.00012746	0.6379	0.00036183	0.41319	0.00023437	567.2258978032623	110.17	0.56327	110.91	110.68	111.24	0.73692	-0.074143	0.00021855	NaN	18.135	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1541800			5114	12147	3403	3447							-0.12513213842930782
CYSHSPPTP	9	Unmodified	_CYSHSPPTP_					0	0	0		nc|ENSG00000104907|Q9NXH9-2|TRMT1;ENSG00000104907|ENST00000357720|TRMT1;ENST00000593157.5_1_19:13215751-13216296:-|nuORF	nc|ENSG00000104907|Q9NXH9-2|TRMT1	nc|ENSG00000104907|Q9NXH9-2|TRMT1	MULTI-MSMS	A375_MHC_IP_R2	2	988.8211669921875	1	988.419293	987.412016	0.19188	0.00018966	0.82533	0.00081578	1.0172	0.0010054	988.4213746223362	144.22	0.48318	144.25	143.84	144.32	0.024414					15	9	3	0	0	0	0.75764	1	56338	56338		1.8442	0	1	1238000			5115	2554	3404	3448	4983	4983					-0.08219311285074582
CYSNDAPDDMV	11	Unmodified	_CYSNDAPDDMV_					0	0	0		ENSG00000187676|ENST00000343307|B3GLCT	ENSG00000187676|ENST00000343307|B3GLCT	ENSG00000187676|ENST00000343307|B3GLCT	MSMS	A375_MHC_IP_R2	2	615.2238159179688	2	615.226096	1228.43764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.367	1	88.1	87.6	88.6	0.7328								0	0	0	0.16249	1	33225	33225		5.7319	0.43497	1				5116	8847	3405	3449	4984	4984					-0.16744249615635454
DAAAPARYE	9	Unmodified	_DAAAPARYE_					0	0	0		ENST00000544974.6_2_15:71256204-71272504:+|nuORF	ENST00000544974.6_2_15:71256204-71272504:+|nuORF	ENST00000544974.6_2_15:71256204-71272504:+|nuORF	MSMS	A375_MHC_IP_R1	1	482.0180358886719	2	482.230156	962.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.64	1	143.64	143.14	144.14	0								0	0	0	0.15486	1	55100	55100		4.3292	0	1				5117	13320	3406	3450	4985	4985					-0.036965665216712296
DAAEFWRKFFG	11	Unmodified	_DAAEFWRKFFG_					0	0	0		nc|ENSG00000114423|Q13191-3|CBLB;nc|ENSG00000114423|Q13191-2|CBLB;ENSG00000114423|ENST00000394030|CBLB	nc|ENSG00000114423|Q13191-3|CBLB	nc|ENSG00000114423|Q13191-3|CBLB	MSMS	A375_MHC_IP_R2	2	686.875732421875	2	687.335487	1372.65642	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.02	1	116.71	116.21	117.21	0.68999								0	0	0	0.16191	1	43746	43746		8.7454	0.58988	1				5118	3220	3407	3451	4986	4986					-0.015001091996509786
DAAFTVCEKA	10	Unmodified	_DAAFTVCEKA_					0	0	0			REV__nc|ENSG00000143889|Q8WVV9-3|HNRNPLL	REV__nc|ENSG00000143889|Q8WVV9-3|HNRNPLL	MULTI-MSMS	A375_MHC_IP_R2	2	528.197265625	2	527.747324	1053.4801	-0.77357	-0.00040825	-0.41664	-0.00021988	-1.1902	-0.00062813	527.746635802525	28.255	0.35429	28.934	28.706	29.06	0.67857					8	6	2	0	0	0	0.52785	1	9714	9714		26.268	1.2772	1	2138600	+		5119	19396	3408	3452	4987	4987					-0.04450486425048439
DAAKDLKVY	9	Unmodified	_DAAKDLKVY_					0	0	0			REV__ENSG00000167513|ENST00000301019|CDT1	REV__ENSG00000167513|ENST00000301019|CDT1	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1788330078125	2	511.779482	1021.54441	-0.72469	-0.00037088	-0.28624	-0.00014649	-1.0109	-0.00051737	511.7792399383493	44.361	0.60753	45.13	44.782	45.39	0.7691					16	11	2	0	0	0	0.39388	1	16574	16574		32.305	8.2849	1	2852700	+		5120	20764	3409	3453	4988	4988					0.03450036723370431
DAARIKYVIF	10	Unmodified	_DAARIKYVIF_					0	0	0			REV__ENSG00000156411|ENST00000286953|ATP5MJ	REV__ENSG00000156411|ENST00000286953|ATP5MJ	MULTI-MSMS	A375_MHC_IP_R1	1	399.2593688964844	3	399.232641	1194.67609	-0.1686	-6.7311E-05	-2.8825	-0.0011508	-3.0511	-0.0012181	399.23161854814475	23.133	0.30264	23.133	22.924	23.227	0					8	5	2	0	0	0	0.70741	1	6267	6267		8.9762	0.68981	1	2649900	+		5121	19980	3410	3454	4989	4989					0.0865426681111785
DAARVPLRPPQ	11	Unmodified	_DAARVPLRPPQ_					0	0	0			REV__nc|ENSG00000184154|Q96E66-5|LRRC51	REV__nc|ENSG00000184154|Q96E66-5|LRRC51	MSMS	A375_MHC_IP_R1	1	610.5835571289062	2	610.348929	1218.6833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.48	1	134.48	133.98	134.98	0								0	0	0	0.16258	1	51861	51861		5.2969	1.7004	1		+		5122	27405	3411	3455	4990	4990					0.08270999411547564
DAATRKPIW	9	Unmodified	_DAATRKPIW_					0	0	0		POLR3B|p.V828*|1|0.07|ENSG00000013503|chr12:106459280-106459280|G/-|frameshift_variant;ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B	POLR3B|p.V828*|1|0.07|ENSG00000013503|chr12:106459280-106459280|G/-|frameshift_variant	POLR3B|p.V828*|1|0.07|ENSG00000013503|chr12:106459280-106459280|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	529.692626953125	2	529.293091	1056.57163	-0.76547	-0.00040516	-0.20638	-0.00010923	-0.97185	-0.00051439	529.2930447600976	34.642	0.86113	35.406	35.068	35.929	0.76338					33	16	3	0	0	0	0.10103	1	12471	12471		62.573	0	1	9410200			5123	1023	3412	3456	4991	4991					0.04560565054430299
DACDFDEDCWF	11	Unmodified	_DACDFDEDCWF_					0	0	0			REV__LRP1B|p.G3536E|1|0.41|ENSG00000168702|chr2:140378211-140378211|C/T|missense_variant	REV__LRP1B|p.G3536E|1|0.41|ENSG00000168702|chr2:140378211-140378211|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	683.201904296875	2	683.223553	1364.43255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.875	1	97.875	97.375	98.375	0								0	0	0	0.16297	1	35959	35959		3.2813	1.9518	1		+		5124	26947	3413	3457	4992	4992					-0.2350855347824563
DACDPDEDCV	10	Unmodified	_DACDPDEDCV_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B	REV__ENSG00000168702|ENST00000389484|LRP1B	MULTI-MSMS	A375_MHC_IP_R1	1	541.575439453125	2	541.176072	1080.33759	-0.59458	-0.00032177	-1.6734	-0.0009056	-2.268	-0.0012274	541.1759019565258	59.726	0.71052	59.726	59.245	59.955	0					30	13	3	0	0	0	0.71866	2	21470	21470;21491		3.9444	0.66309	1	4410200	+		5125	20879	3414	3458	4993;4994	4993					-0.1993648694942749
DACKLCRMAE	10	Unmodified	_DACKLCRMAE_					0	0	0			REV__ENSG00000188641|ENST00000370192|DPYD	REV__ENSG00000188641|ENST00000370192|DPYD	MULTI-MSMS	A375_MHC_IP_R1	1	570.7134399414062	2	570.253936	1138.49332	-0.079314	-4.5229E-05	-0.28323	-0.00016152	-0.36255	-0.00020674	570.2537725791144	70.063	1.8844	70.063	69.326	71.211	0					76	36	3	0	0	0	0.52785	1	25526	25526		26.268	0.86883	1	2935500	+		5126	22104	3415	3459	4995	4995					-0.07038694909010701
DACKLCRMAE	10	Unmodified	_DACKLCRMAE_					0	0	0			REV__ENSG00000188641|ENST00000370192|DPYD	REV__ENSG00000188641|ENST00000370192|DPYD	MULTI-MSMS	A375_MHC_IP_R2	2	570.6531372070312	2	570.253936	1138.49332	-0.22972	-0.000131	-0.46096	-0.00026286	-0.69068	-0.00039386	570.2537219390673	69.655	1.9791	70.39	69.474	71.453	0.73421					76	38	3	0	0	0	0.67512	1	26241	26241		15.248	1.3424	1	2906600	+		5127	22104	3415	3459	4996	4996					-0.07038694909010701
DADDVAILTY	10	Unmodified	_DADDVAILTY_					0	0	0		ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	MULTI-MSMS	A375_MHC_IP_R1	1	548.6631469726562	2	548.263862	1094.51317	-0.29486	-0.00016166	-0.15222	-8.3459E-05	-0.44708	-0.00024512	548.2632995585114	112.05	1.6335	112.05	111.16	112.79	0					73	31	3	0	0	0	0.064055	2	40969	40931;40969		71.922	31.973	1	12703000			5128	7118	3416	3460	4997;4998	4998					-0.030305811013704442
DADDVAILTY	10	Unmodified	_DADDVAILTY_					0	0	0		ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	MULTI-MSMS	A375_MHC_IP_R1	1	1096.4136962890625	1	1095.52045	1094.51317	0.34531	0.00037829	0.0064017	7.0131E-06	0.35171	0.0003853	1095.520325125358	112	0.76228	112	111.57	112.33	0					44	14	4	0	0	0	0.0087379	1	41068	41068		107.19	47.113	1	24343000			5129	7118	3416	3460	4999	4999					-0.030305811013704442
DADDVAILTY	10	Unmodified	_DADDVAILTY_					0	0	0		ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	MULTI-MSMS	A375_MHC_IP_R2	2	548.6638793945312	2	548.263862	1094.51317	-0.60045	-0.0003292	-0.11588	-6.3533E-05	-0.71633	-0.00039274	548.2635938144097	111.4	1.634	112.14	111.45	113.08	0.73692					59	31	3	0	0	0	0.011448	1	41936	41936		111.29	42.182	1	12834000			5130	7118	3416	3460	5000	5000					-0.030305811013704442
DADDVAILTY	10	Unmodified	_DADDVAILTY_					0	0	0		ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	MULTI-MATCH	A375_MHC_IP_R2	2		1	1095.52045	1094.51317	0.28165	0.00030856	0.10967	0.00012014	0.39132	0.0004287	1095.5204697904326	111.43	0.92319	112.17	111.65	112.57	0.73692	0.085046	7.7125E-05	NaN	107.19	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17452000			5131	7118	3416	3460							-0.030305811013704442
DADRIVYYY	9	Unmodified	_DADRIVYYY_					0	0	0		ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3	ENSG00000013375|ENST00000513973|PGM3	ENSG00000013375|ENST00000513973|PGM3	MULTI-MSMS	A375_MHC_IP_R2	2	589.6795654296875	2	589.279846	1176.54514	-0.76793	-0.00045253	0.10053	5.9241E-05	-0.6674	-0.00039329	589.7811336887546	72.19	0.60688	72.924	72.567	73.174	0.73421					21	11	3	0	0	0	0.54799	1	27408	27408		17.443	6.6187	1	2545500			5132	1020	3417	3461	5001	5001					-0.03607168627581814
DAEDDCGNDF	10	Unmodified	_DAEDDCGNDF_					0	0	0		ENSG00000113600|ENST00000263408|C9	ENSG00000113600|ENST00000263408|C9	ENSG00000113600|ENST00000263408|C9	MSMS	A375_MHC_IP_R1	1	550.6920166015625	2	550.677293	1099.34003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.73	1	110.73	110.23	111.23	0								0	0	0	0.15601	1	40598	40598		1.3295	0.5359	1				5133	3167	3418	3462	5002	5002					-0.2056631522011685
DAEDMVTHH	9	Unmodified	_DAEDMVTHH_					0	0	0		nc|ENSG00000066230|P48764-2|SLC9A3;ENSG00000066230|ENST00000264938|SLC9A3	nc|ENSG00000066230|P48764-2|SLC9A3	nc|ENSG00000066230|P48764-2|SLC9A3	MULTI-MSMS	A375_MHC_IP_R2	2	527.6334838867188	2	527.716556	1053.41856	-0.83268	-0.00043942	-0.38627	-0.00020384	-1.2189	-0.00064326	527.7162184142941	21.501	1.3229	22.12	21.625	22.948	0.61932					45	25	2	0	0	0	0.32899	6	6833	6603;6667;6696;6771;6833;7044		28.487	28.487	1	2564700			5134	1406	3419	3463	5003;5004;5005;5006;5007;5008	5007					-0.10601418124360862
DAEDMVTHH	9	Unmodified	_DAEDMVTHH_					0	0	0		nc|ENSG00000066230|P48764-2|SLC9A3;ENSG00000066230|ENST00000264938|SLC9A3	nc|ENSG00000066230|P48764-2|SLC9A3	nc|ENSG00000066230|P48764-2|SLC9A3	MULTI-MSMS	A375_MHC_IP_R2	2	528.1161499023438	2	527.716556	1053.41856	-1.1521	-0.00060801	0.31091	0.00016407	-0.84123	-0.00044393	527.7165904135231	37.021	0.35472	37.792	37.665	38.02	0.7709					10	6	2	0	0	0	0.58047	1	13586	13586		15.847	5.7733	1	1931800			5135	1406	3419	3463	5009	5009					-0.10601418124360862
DAEDMVTHH	9	Unmodified	_DAEDMVTHH_					0	0	0		nc|ENSG00000066230|P48764-2|SLC9A3;ENSG00000066230|ENST00000264938|SLC9A3	nc|ENSG00000066230|P48764-2|SLC9A3	nc|ENSG00000066230|P48764-2|SLC9A3	MULTI-MATCH	A375_MHC_IP_R1	1		2	527.716556	1053.41856	-0.63634	-0.0003358	1.0213	0.00053893	0.38492	0.00020313	527.7165082035326	37.868	0.30573	37.868	37.71	38.016	0	0.038371	0.00061064	NaN	15.847	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	922740			5136	1406	3419	3463							-0.10601418124360862
DAELVAQWNY	10	Unmodified	_DAELVAQWNY_					0	0	0		ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	MULTI-MSMS	A375_MHC_IP_R1	1	605.1823120117188	2	604.782753	1207.55095	-0.20613	-0.00012466	-0.42719	-0.00025836	-0.63332	-0.00038302	604.782657568269	110.7	0.66345	110.7	110.44	111.1	0					17	12	2	0	0	0	0.074642	1	40615	40615		69.105	40.023	1	1409200			5137	1067	3420	3464	5010	5010					-0.044520701158944576
DAELVAQWNY	10	Unmodified	_DAELVAQWNY_					0	0	0		ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	MULTI-MATCH	A375_MHC_IP_R2	2		2	604.782753	1207.55095	-0.28118	-0.00017005	0.059963	3.6265E-05	-0.22121	-0.00013379	604.7826915637763	110.23	0.81818	110.97	110.63	111.45	0.73691	0.13257	0.00049881	NaN	69.105	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1349400			5138	1067	3420	3464							-0.044520701158944576
DAESLDKRAF	10	Unmodified	_DAESLDKRAF_					0	0	0			REV__nc|ENSG00000185507|Q92985-2|IRF7	REV__nc|ENSG00000185507|Q92985-2|IRF7	MULTI-SECPEP	A375_MHC_IP_R2	2	384.6240539550781	3	384.527894	1150.56185	-0.44177	-0.00016987	0.61175	0.00023524	0.16998	6.5363E-05	384.52804137467893	38.208	0.35661	38.983	38.843	39.2	0.77451					9	6	2	0	0	0	0.91442	1	13998	13998		2.4348	2.2533	1	1382100	+		5139	21896	3421	3465	5011	5011					-0.007406677416156526
DAFLMLNSL	9	Unmodified	_DAFLMLNSL_					0	0	0		tr|U7STN1|U7STN1_FUSNU23SrRNA(-C5)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01407PE=3SV=1	tr|U7STN1|U7STN1_FUSNU23SrRNA(-C5)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01407PE=3SV=1	tr|U7STN1|U7STN1_FUSNU23SrRNA(-C5)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01407PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	512.6611328125	2	512.26261	1022.51067	-0.64212	-0.00032893	-1.4386	-0.00073695	-2.0807	-0.0010659	512.261814522864	95.695	0.81277	96.445	96.144	96.957	0.75045					22	15	2	0	0	0	0.65527	1	36361	36361		22.736	12.662	1	2514700			5140	29708	3422	3466	5012	5012					0.0003129195997644274
DAFLMLNSL	9	Unmodified	_DAFLMLNSL_					0	0	0		tr|U7STN1|U7STN1_FUSNU23SrRNA(-C5)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01407PE=3SV=1	tr|U7STN1|U7STN1_FUSNU23SrRNA(-C5)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01407PE=3SV=1	tr|U7STN1|U7STN1_FUSNU23SrRNA(-C5)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01407PE=3SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	512.26261	1022.51067	-0.42437	-0.00021739	-1.7966	-0.00092035	-2.221	-0.0011377	512.2616373112497	96.568	0.86492	96.568	96.018	96.883	0	0.06134	-0.00012593	NaN	22.736	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1816400			5141	29708	3422	3466							0.0003129195997644274
DAGDGHRGTEV	11	Unmodified	_DAGDGHRGTEV_					0	0	0		ENSG00000164715|ENST00000297293|LMTK2	ENSG00000164715|ENST00000297293|LMTK2	ENSG00000164715|ENST00000297293|LMTK2	MSMS	A375_MHC_IP_R2	2	557.1773681640625	2	557.249609	1112.48466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.666	1	43.439	42.939	43.939	0.7724								0	0	0	0.16108	1	15875	15875		13.042	0.51092	1				5142	6871	3423	3467	5013	5013					-0.06707885957939652
DAGDYTCKF	9	Unmodified	_DAGDYTCKF_					0	0	0		nc|ENSG00000115602|Q01638-4|IL1RL1;nc|ENSG00000115602|Q01638-3|IL1RL1;nc|ENSG00000115602|Q01638-2|IL1RL1;ENSG00000115602|ENST00000233954|IL1RL1	nc|ENSG00000115602|Q01638-4|IL1RL1	nc|ENSG00000115602|Q01638-4|IL1RL1	MSMS	A375_MHC_IP_R1	1	510.18157958984375	2	510.210575	1018.4066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.741	1	74.741	74.241	75.241	0								0	0	0	0.14905	1	27225	27225		23.148	10.617	1				5143	3325	3424	3468	5014	5014					-0.10187034867533384
DAGDYTCKF	9	Unmodified	_DAGDYTCKF_					0	0	0		nc|ENSG00000115602|Q01638-4|IL1RL1;nc|ENSG00000115602|Q01638-3|IL1RL1;nc|ENSG00000115602|Q01638-2|IL1RL1;ENSG00000115602|ENST00000233954|IL1RL1	nc|ENSG00000115602|Q01638-4|IL1RL1	nc|ENSG00000115602|Q01638-4|IL1RL1	MSMS	A375_MHC_IP_R2	2	510.1820373535156	2	510.210575	1018.4066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.915	1	74.653	74.153	75.153	0.73752								0	0	0	0.14905	1	28056	28056		23.148	8.3102	1				5144	3325	3424	3468	5015	5015					-0.10187034867533384
DAGEVGSAKFR	11	Unmodified	_DAGEVGSAKFR_					0	0	0			REV__nc|ENSG00000156515|P19367-4|HK1	REV__nc|ENSG00000156515|P19367-4|HK1	MULTI-SECPEP	A375_MHC_IP_R1	1	568.6306762695312	2	568.78837	1135.56219	-0.77367	-0.00044006	-0.60161	-0.00034219	-1.3753	-0.00078224	569.2895365604444	29.501	0.20279	29.501	29.353	29.555	0					5	3	2	0	0	0	0.98748	1	9215	9215		5.2969	0	1	5002500	+		5145	19987	3425	3469	5016	5016					-0.00017248021754312504
DAGRRFSAGW	10	Unmodified	_DAGRRFSAGW_					0	0	0			REV__nc|ENSG00000186063|Q96BJ3-3|AIDA	REV__nc|ENSG00000186063|Q96BJ3-3|AIDA	MULTI-SECPEP	A375_MHC_IP_R1	1	561.1900024414062	2	561.775597	1121.53664	-0.84174	-0.00047287	0.27029	0.00015184	-0.57145	-0.00032103	561.7750699932166	38.256	0.4595	38.256	37.964	38.423	0					12	8	2	0	0	0	0.93194	1	12864	12864		1.1933	0	1	2577700	+		5146	21942	3426	3470	5017	5017					-0.01926677753522199
DAGSLQVAPFE	11	Unmodified	_DAGSLQVAPFE_					0	0	0			REV__ENST00000367467.7_1_6:148663875-148664016:+|nuORF	REV__ENST00000367467.7_1_6:148663875-148664016:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	567.690185546875	2	567.277303	1132.54005	-0.40705	-0.00023091	-0.43566	-0.00024714	-0.84271	-0.00047805	567.2770517888015	32.34	0.56063	33.077	32.806	33.367	0.73691					21	10	3	0	0	0	0.57844	1	11584	11584		24.991	1.2012	1	9130000	+		5147	23972	3427	3471	5018	5018					-0.020914724902013404
DAGYIPSNY	9	Unmodified	_DAGYIPSNY_					0	0	0			REV__ENSG00000186280|ENST00000335080|KDM4D	REV__ENSG00000186280|ENST00000335080|KDM4D	MULTI-SECPEP	A375_MHC_IP_R1	1	500.6249084472656	2	500.224539	998.434526	-0.43922	-0.00021971	2.099	0.0010499	1.6597	0.00083024	500.2246536064247	58.404	0.66119	58.404	58.024	58.685	0					27	12	3	0	0	0	0.16676	1	21003	21003		49.933	0	1	3480700	+		5148	21960	3428	3472	5019	5019					-0.06475388615808697
DAHECFVSPV	10	Unmodified	_DAHECFVSPV_					0	0	0		nc|ENSG00000120254|Q6UB35-2|MTHFD1L;ENSG00000120254|ENST00000367321|MTHFD1L	nc|ENSG00000120254|Q6UB35-2|MTHFD1L	nc|ENSG00000120254|Q6UB35-2|MTHFD1L	MULTI-MSMS	A375_MHC_IP_R2	2	552.1975708007812	2	552.244949	1102.47534	-1.045	-0.0005771	-0.71192	-0.00039315	-1.7569	-0.00097026	552.2446068809063	58.025	0.50265	58.774	58.477	58.98	0.74895					14	9	2	0	0	0	0.70496	1	21978	21978		10.074	3.3508	1	1341600			5149	3654	3429	3473	5020	5020					-0.07179370567814658
DAHYAKSGY	9	Unmodified	_DAHYAKSGY_					0	0	0		ENSG00000036672|ENST00000260187|USP2	ENSG00000036672|ENST00000260187|USP2	ENSG00000036672|ENST00000260187|USP2	MSMS	A375_MHC_IP_R1	1	506.1369323730469	2	506.230156	1010.44576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.55	1	28.55	28.05	29.05	0								0	0	0	0.15486	1	8823	8823		6.2058	0.97511	1				5150	1141	3430	3474	5021	5021					-0.059045665216672205
DAIELYRKANY	11	Unmodified	_DAIELYRKANY_					0	0	0		nc|ENSG00000118965|Q9P2L0|WDR35;ENSG00000118965|ENST00000281405|WDR35	nc|ENSG00000118965|Q9P2L0|WDR35	nc|ENSG00000118965|Q9P2L0|WDR35	MULTI-MSMS	A375_MHC_IP_R1	1	678.7506103515625	2	678.351334	1354.68811	-0.36695	-0.00024892	0.65947	0.00044735	0.29251	0.00019843	678.3521058243831	49.743	0.45773	49.743	49.49	49.947	0					18	8	3	0	0	0	0.65374	1	17624	17624		18.373	3.1246	1	2489800			5151	3566	3431	3475	5022	5022					0.024958387636615953
DAKTSRPDKPF	11	Unmodified	_DAKTSRPDKPF_					0	0	0		ENSG00000187678|ENST00000434127|SPRY4	ENSG00000187678|ENST00000434127|SPRY4	ENSG00000187678|ENST00000434127|SPRY4	MULTI-MSMS	A375_MHC_IP_R1	1	421.6228332519531	3	421.222693	1260.64625	-0.043894	-1.8489E-05	-0.56577	-0.00023832	-0.60967	-0.00025681	421.5562298377724	19.772	0.66159	19.772	19.318	19.98	0					25	12	3	0	0	0	0.50903	1	4980	4980		30.414	13.575	1	4130900			5152	8848	3432	3476	5023	5023					0.026352830751193324
DAKVMSWWDY	10	Unmodified	_DAKVMSWWDY_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A	ENSG00000134910|ENST00000392708|STT3A	ENSG00000134910|ENST00000392708|STT3A	MSMS	A375_MHC_IP_R1	1	650.7410888671875	2	650.786981	1299.55941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.5	1	107.5	107	108	0								0	0	0	0.15332	1	39444	39444		10.074	1.9184	1				5153	4626	3433	3477	5024	5024					-0.07838839470923631
DALAKGLY	8	Unmodified	_DALAKGLY_					0	0	0		ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENSG00000142347|ENST00000644032|MYO1F;MYO1F|p.R360G|1|0.34|ENSG00000142347|chr19:8550183-8550183|G/C|missense_variant;ENST00000595191.1_1_19:8614980-8615536:-|nuORF;ENST00000600825.1_1_19:8612859-8615196:-|nuORF	ENST00000594977.5_1_19:8612968-8642307:-|nuORF	ENST00000594977.5_1_19:8612968-8642307:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	426.1369323730469	2	425.737086	849.459619	-0.4018	-0.00017106	0.1628	6.9312E-05	-0.239	-0.00010175	425.7370902248048	37.683	1.025	38.457	38.124	39.149	0.77451					35	19	2	0	0	0	0.74466	1	14053	14053		21.747	0	1	6466000			5154	5305	3434	3478	5025	5025					0.02886710977418261
DALEDEESW	9	Unmodified	_DALEDEESW_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MSMS	A375_MHC_IP_R1	1	547.2000122070312	2	547.219651	1092.42475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.548	1	67.548	67.048	68.048	0								0	0	0	0.15411	1	24479	24479		14.838	2.3067	1		+		5155	16641	3435	3479	5026	5026					-0.11776621411831911
DALESLLAIGH	11	Unmodified	_DALESLLAIGH_					0	0	0			REV__ENSG00000266074|ENST00000675386|BAHCC1	REV__ENSG00000266074|ENST00000675386|BAHCC1	MULTI-SECPEP	A375_MHC_IP_R1	1	570.2078247070312	2	569.808771	1137.60299	-0.093052	-5.3022E-05	-0.8696	-0.00049551	-0.96266	-0.00054853	569.8080306261495	47.936	0.4042	47.936	47.768	48.173	0					11	7	2	0	0	0	0.92455	1	16918	16918		21.537	0	1	2553600	+		5156	22925	3436	3480	5027	5027					0.039690932978373894
DALSYGRY	8	Unmodified	_DALSYGRY_					0	0	0			REV__SPACA3|p.G106R|1|0.75|ENSG00000141316|chr17:32995690-32995690|G/A|missense_variant	REV__SPACA3|p.G106R|1|0.75|ENSG00000141316|chr17:32995690-32995690|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	472.6896667480469	2	472.727249	943.439946	-0.4433	-0.00020956	0.035767	1.6908E-05	-0.40753	-0.00019265	472.72722953725724	43.819	0.50756	43.819	43.502	44.01	0					15	9	2	0	0	0	0.77123	1	15304	15304		14.582	2.0501	1	2909400	+		5157	19255	3437	3481	5028	5028					-0.03403665033329162
DALTELQALKK	11	Unmodified	_DALTELQALKK_					0	0	0			REV__GBP5|p.P252A|1|0.27|ENSG00000154451|chr1:89266460-89266460|G/C|missense_variant	REV__GBP5|p.P252A|1|0.27|ENSG00000154451|chr1:89266460-89266460|G/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	410.5953063964844	3	410.574844	1228.7027	0.095752	3.9313E-05	0.024668	1.0128E-05	0.12042	4.9442E-05	410.9091834831518	23.1	0.25163	23.1	22.924	23.176	0					6	4	2	0	0	0	0.73135	1	6213	6213		3.8459	0.25323	1	2912000	+		5158	26668	3438	3482	5029	5029					0.0974991091177344
DALTLLHKL	9	Unmodified	_DALTLLHKL_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1029663085938	2	512.313492	1022.61243	-1.1456	-0.00058691	-1.8909	-0.00096872	-3.0365	-0.0015556	512.3117745480347	52.292	0.25224	53.044	52.882	53.134	0.75225					6	4	2	0	0	0	0.76187	1	19733	19733		11.64	7.6959	1	765040	+		5159	21249	3439	3483	5030	5030					0.10202906374036047
DALTPVIE	8	Unmodified	_DALTPVIE_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1;ENST00000468077.5_1_1:234541177-234541731:-|nuORF;ENST00000483404.5_1_1:234536679-234541836:-|nuORF	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MSMS	A375_MHC_IP_R2	2	429.290771484375	2	429.234376	856.454199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.479	1	72.213	71.713	72.713	0.73421								0	0	0	0.16876	1	27116	27116		13.508	0	1				5160	1303	3440	3484	5031	5031					0.020229873949460853
DALVVDFRSEQ	11	Unmodified	_DALVVDFRSEQ_					0	0	0			REV__nc|ENSG00000156096|P06133-3|UGT2B4	REV__nc|ENSG00000156096|P06133-3|UGT2B4	MULTI-MSMS	A375_MHC_IP_R2	2	426.9472351074219	3	426.882337	1277.62518	-0.46816	-0.00019985	-0.14443	-6.1654E-05	-0.61259	-0.0002615	426.8822796818412	19.324	0.95891	19.927	19.583	20.542	0.60308					43	18	3	0	0	0	0.72964	1	6126	6126		9.2438	0.49199	1	14928000	+		5161	19960	3441	3485	5032	5032					-0.002527270243717794
DAMDSYYDY	9	Unmodified	_DAMDSYYDY_					0	0	0		nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8;ENST00000523998.1_1_8:95888437-95888774:+|nuORF	nc|ENSG00000164941|Q75QN2-2|INTS8	nc|ENSG00000164941|Q75QN2-2|INTS8	MSMS	A375_MHC_IP_R2	2	571.6986083984375	2	571.70278	1141.39101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.692	1	61.437	60.937	61.937	0.74503								0	0	0	0.15486	1	22984	22984		7.9102	1.7044	1				5162	6896	3442	3486	5033	5033					-0.17403366175244628
DANESGFESYE	11	Unmodified	_DANESGFESYE_					0	0	0		ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	ENSG00000130816|ENST00000359526|DNMT1	ENSG00000130816|ENST00000359526|DNMT1	MSMS	A375_MHC_IP_R1	1	624.1648559570312	2	624.238572	1246.46259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.84	1	108.84	108.34	109.34	0								0	0	0	0.16302	1	39924	39924		2.9952	1.3426	1				5163	4284	3443	3487	5034	5034					-0.1507815521702014
DANESGFESYE	11	Unmodified	_DANESGFESYE_					0	0	0		ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	ENSG00000130816|ENST00000359526|DNMT1	ENSG00000130816|ENST00000359526|DNMT1	MSMS	A375_MHC_IP_R2	2	624.236083984375	2	624.238572	1246.46259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.89	1	103.65	103.15	104.15	0.76428								0	0	0	0.16302	1	38975	38975		2.9952	0.49676	1				5164	4284	3443	3487	5035	5035					-0.1507815521702014
DAPFRPANTH	10	Unmodified	_DAPFRPANTH_					0	0	0		GRM2|p.D436N|1|0.4|ENSG00000164082|chr3:51715079-51715079|G/A|missense_variant	GRM2|p.D436N|1|0.4|ENSG00000164082|chr3:51715079-51715079|G/A|missense_variant	GRM2|p.D436N|1|0.4|ENSG00000164082|chr3:51715079-51715079|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	376.25299072265625	3	375.852712	1124.53631	0.17542	6.5931E-05	0.32264	0.00012126	0.49806	0.0001872	375.85281922841915	24.372	0.45294	24.372	24.245	24.698	0					12	8	2	0	0	0	0.92957	1	6943	6943		0.56317	0	1	4083000			5165	14089	3444	3488	5036	5036					-0.020980974733902258
DAPYYENNI	9	Unmodified	_DAPYYENNI_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	A375_MHC_IP_R2	2	550.1397705078125	2	549.740554	1097.46655	-0.73627	-0.00040476	0.36045	0.00019815	-0.37582	-0.0002066	549.7406199555916	73.515	0.7663	74.251	73.887	74.653	0.73541					27	14	3	0	0	0	0.73363	1	27965	27965		10.824	10.824	1	1943800	+		5166	18137	3445	3489	5037	5037					-0.0782802093265218
DAQCSCCLLE	10	Unmodified	_DAQCSCCLLE_					0	0	0			REV__nc|ENSG00000104228|Q9UPQ4-2|TRIM35	REV__nc|ENSG00000104228|Q9UPQ4-2|TRIM35	MSMS	A375_MHC_IP_R1	1	542.6715698242188	2	542.709027	1083.4035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.824	1	97.824	97.324	98.324	0								0	0	0	0.15332	1	35939	35939		10.074	0.72649	1		+		5167	17309	3446	3490	5038	5038					-0.1348636930822522
DARDLVKKF	9	Unmodified	_DARDLVKKF_					0	0	0		ENST00000525088.5_1_11:67200641-67201630:+|nuORF;ENSG00000175634|ENST00000312629|RPS6KB2	ENST00000525088.5_1_11:67200641-67201630:+|nuORF	ENST00000525088.5_1_11:67200641-67201630:+|nuORF	MSMS	A375_MHC_IP_R1	1	364.5830383300781	3	364.545108	1090.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.807	1	27.807	27.307	28.307	0								0	0	0	0.15411	1	8487	8487		10.151	4.3671	1				5168	7973	3447	3491	5039	5039					0.07181120742961866
DARIVRFKRRF	11	Unmodified	_DARIVRFKRRF_					0	0	0			REV__nc|ENSG00000156795|Q96HA8-2|NTAQ1	REV__nc|ENSG00000156795|Q96HA8-2|NTAQ1	MSMS	A375_MHC_IP_R1	1	488.6781921386719	3	488.628388	1462.86333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.22	1	143.22	142.72	143.72	0								0	0	0	0.16337	1	54946	54946		0.40827	0	1		+		5169	19997	3448	3492	5040	5040					0.15041723139211172
DARKERVYYK	10	Unmodified	_DARKERVYYK_					0	0	0		tr|U7SWJ5|U7SWJ5_FUSNUUniversalbacterialproteinYeaZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01066PE=4SV=1	tr|U7SWJ5|U7SWJ5_FUSNUUniversalbacterialproteinYeaZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01066PE=4SV=1	tr|U7SWJ5|U7SWJ5_FUSNUUniversalbacterialproteinYeaZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01066PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	442.64654541015625	3	443.242088	1326.70443	-0.70303	-0.00031161	-4.2289	-0.0018744	-4.9319	-0.002186	443.23983917357634	22.252	0.15255	22.871	22.744	22.897	0.61932					4	2	2	0	0	0	0.94755	1	7031	7031		0.094841	0	1	775060			5170	29810	3449	3493	5041	5041					0.05414964720421267
DARLKKLPG	9	Unmodified	_DARLKKLPG_					0	0	0		DQX1|p.E192K|1|0.21|ENSG00000144045|chr2:74524165-74524165|C/T|missense_variant	DQX1|p.E192K|1|0.21|ENSG00000144045|chr2:74524165-74524165|C/T|missense_variant	DQX1|p.E192K|1|0.21|ENSG00000144045|chr2:74524165-74524165|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	499.9827575683594	2	499.311284	996.608014	-0.609	-0.00030408	-0.15781	-7.8794E-05	-0.76681	-0.00038288	499.3112599631453	25.873	0.30237	25.873	25.765	26.068	0					6	5	2	0	0	0	0.77396	1	7590	7590		1.3295	0	1	1233800			5171	798	3450	3494	5042	5042					0.10957441951131841
DASDTDVPDI	10	Unmodified	_DASDTDVPDI_					0	0	0		ENSG00000165105|ENST00000376447|RASEF	ENSG00000165105|ENST00000376447|RASEF	ENSG00000165105|ENST00000376447|RASEF	MSMS	A375_MHC_IP_R1	1	524.2009887695312	2	524.227476	1046.4404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.17	1	106.17	105.67	106.67	0								0	0	0	0.15158	1	38975	38975		14.838	0.25658	1				5172	6913	3451	3495	5043	5043					-0.08096334894798929
DASFSSSTLHA	11	Unmodified	_DASFSSSTLHA_					0	0	0			REV__ENSG00000197168|ENST00000684899|NEK5	REV__ENSG00000197168|ENST00000684899|NEK5	MULTI-MSMS	A375_MHC_IP_R1	1	562.1561279296875	2	561.756735	1121.49892	-0.62956	-0.00035366	0.028522	1.6022E-05	-0.60104	-0.00033764	561.7568267475174	25.719	0.65855	25.719	25.46	26.118	0					30	12	4	0	0	0	0.67989	2	7545	7545;7589		17.113	0.1706	1	16221000	+		5173	22266	3452	3496	5044;5045	5044					-0.05697233529645018
DASFSSSTLHA	11	Unmodified	_DASFSSSTLHA_					0	0	0			REV__ENSG00000197168|ENST00000684899|NEK5	REV__ENSG00000197168|ENST00000684899|NEK5	MULTI-MSMS	A375_MHC_IP_R2	2	561.6947021484375	2	561.756735	1121.49892	-1.02	-0.00057297	0.15615	8.7719E-05	-0.86381	-0.00048525	561.7568267355205	25.198	0.60987	25.842	25.568	26.178	0.64368					29	11	4	0	0	0	0.67989	2	8367	8367;8400		17.113	0.1706	1	13957000	+		5174	22266	3452	3496	5046;5047	5046					-0.05697233529645018
DASNEEYSL	9	Unmodified	_DASNEEYSL_					0	0	0		ENST00000460720.5_1_2:9546965-9548358:-|nuORF;ENST00000490426.5_1_2:9546965-9563580:-|nuORF;ENSG00000119185|ENST00000355346|ITGB1BP1	ENST00000460720.5_1_2:9546965-9548358:-|nuORF	ENST00000460720.5_1_2:9546965-9548358:-|nuORF	MSMS	A375_MHC_IP_R1	1	514.1661987304688	2	514.214369	1026.41418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.999	1	44.999	44.499	45.499	0								0	0	0	0.15486	1	15724	15724		12.532	0.89125	1				5175	3575	3453	3497	5048	5048					-0.09796604066286818
DATFSAVYN	9	Unmodified	_DATFSAVYN_					0	0	0		ENSG00000162928|ENST00000295030|PEX13	ENSG00000162928|ENST00000295030|PEX13	ENSG00000162928|ENST00000295030|PEX13	MSMS	A375_MHC_IP_R1	1	494.2196960449219	2	494.224539	986.434526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.449	1	86.449	85.949	86.949	0								0	0	0	0.11948	1	31700	31700		36.044	9.7029	1				5176	6615	3454	3498	5049	5049					-0.05923388615804015
DATIFWYFNVR	11	Unmodified	_DATIFWYFNVR_					0	0	0			REV__HINT3|p.S167F|1|0.21|ENSG00000111911|chr6:125974957-125974957|C/T|missense_variant	REV__HINT3|p.S167F|1|0.21|ENSG00000111911|chr6:125974957-125974957|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	716.4077758789062	2	716.356419	1430.69829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.8	1	110.8	110.3	111.3	0								0	0	0	0.15541	1	40624	40624		17.113	8.3675	1		+		5177	26742	3455	3499	5050	5050					0.00016446488871224574
DATKHKLIE	9	Unmodified	_DATKHKLIE_					0	0	0		ENSG00000135074|ENST00000257527|ADAM19;nc|ENSG00000135074|Q9H013|ADAM19	ENSG00000135074|ENST00000257527|ADAM19	ENSG00000135074|ENST00000257527|ADAM19	MULTI-MSMS	A375_MHC_IP_R1	1	352.24176025390625	3	352.201229	1053.58186	-0.31076	-0.00010945	0.03385	1.1922E-05	-0.27691	-9.7528E-05	352.2011097462443	25.791	0.404	25.791	25.664	26.068	0					10	7	2	0	0	0	0.66474	1	7667	7667		10.151	0.076642	1	5009300			5178	4641	3456	3500	5051	5051					0.05721127988999797
DATKHKLIE	9	Unmodified	_DATKHKLIE_					0	0	0		ENSG00000135074|ENST00000257527|ADAM19;nc|ENSG00000135074|Q9H013|ADAM19	ENSG00000135074|ENST00000257527|ADAM19	ENSG00000135074|ENST00000257527|ADAM19	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	352.201229	1053.58186	-0.31076	-0.00010945	0.03385	1.1922E-05	-0.27691	-9.7528E-05	352.2011097462443	25.791	0.404	25.791	25.664	26.068	0	0	0	NaN	10.151	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5009300			5179	4641	3456	3500							0.05721127988999797
DATLIFEIEL	10	Unmodified	_DATLIFEIEL_					0	0	0		nc|ENSG00000079150|Q9Y680-3|FKBP7;ENSG00000079150|ENST00000424785|FKBP7	nc|ENSG00000079150|Q9Y680-3|FKBP7	nc|ENSG00000079150|Q9Y680-3|FKBP7	MULTI-SECPEP	A375_MHC_IP_R2	2	387.9486389160156	3	388.544662	1162.61216	-0.06149	-2.3891E-05	-0.27957	-0.00010863	-0.34106	-0.00013252	388.5438878006959	48.08	0.55231	48.841	48.632	49.184	0.76128					19	10	3	0	0	0	0.92957	1	18117	18117		5.7834	0.38072	1	2141900			5180	1688	3457	3501	5052	5052					0.0373544186354593
DAVARAGQVV	10	Unmodified	_DAVARAGQVV_					0	0	0		nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	MULTI-SECPEP	A375_MHC_IP_R2	2	492.4772644042969	2	493.274898	984.535243	-0.35818	-0.00017668	-0.35866	-0.00017692	-0.71684	-0.0003536	493.27472850868196	47.591	1.0122	48.352	48.022	49.034	0.76128					50	19	4	0	0	0	0.92227	1	17976	17976		8.7454	1.4562	1	37591000			5181	9421	3458	3502	5053	5053					0.04235688157723416
DAVCNFSTL	9	Unmodified	_DAVCNFSTL_					0	0	0			REV__ENSG00000119714|ENST00000650645|GPR68	REV__ENSG00000119714|ENST00000650645|GPR68	MULTI-SECPEP	A375_MHC_IP_R2	2	485.6208801269531	2	485.220943	968.427332	-0.91344	-0.00044322	0.67385	0.00032696	-0.23959	-0.00011626	485.22115442511466	51.97	0.45874	52.722	52.473	52.932	0.75225					14	8	2	0	0	0	0.74412	1	19598	19598		10.074	0	1	1370000	+		5182	18089	3459	3503	5054	5054					-0.05814444487862147
DAVSPLQAFI	10	Unmodified	_DAVSPLQAFI_					0	0	0		MDN1|p.S3403F|1|0.54|ENSG00000112159|chr6:89692822-89692822|G/A|missense_variant	MDN1|p.S3403F|1|0.54|ENSG00000112159|chr6:89692822-89692822|G/A|missense_variant	MDN1|p.S3403F|1|0.54|ENSG00000112159|chr6:89692822-89692822|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	530.6808471679688	2	530.787307	1059.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.528	1	57.278	56.778	57.778	0.75015								0	0	0	0.14804	1	21368	21368		21.537	2.098	1				5183	14365	3460	3504	5055	5055					0.03266323240427482
DAVVLTSAMK	10	Unmodified	_DAVVLTSAMK_					0	0	0			REV__ENSG00000102755|ENST00000282397|FLT1	REV__ENSG00000102755|ENST00000282397|FLT1	MSMS	A375_MHC_IP_R2	2	517.6790161132812	2	517.781167	1033.54778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.273	1	62.018	61.518	62.518	0.74503								0	0	0	0.15207	1	23219	23219		13.906	0.86358	1		+		5184	17229	3461	3505	5056	5056					0.032349635057244086
DAVYNSPKM	9	Unmodified	_DAVYNSPKM_					0	0	0		OLFML1|p.V175M|1|0.33|ENSG00000183801|chr11:7509502-7509502|G/A|missense_variant	OLFML1|p.V175M|1|0.33|ENSG00000183801|chr11:7509502-7509502|G/A|missense_variant	OLFML1|p.V175M|1|0.33|ENSG00000183801|chr11:7509502-7509502|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	512.6240234375	2	512.742042	1023.46953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.17	1	54.921	54.421	55.421	0.75087								0	0	0	0.1521	1	20446	20446		18.146	3.3081	1				5185	15051	3462	3506	5057	5057					-0.041264690794946546
DAYADRVFD	9	Unmodified	_DAYADRVFD_					0	0	0		ENSG00000119943|ENST00000370575|PYROXD2	ENSG00000119943|ENST00000370575|PYROXD2	ENSG00000119943|ENST00000370575|PYROXD2	MULTI-SECPEP	A375_MHC_IP_R2	2	535.6663208007812	2	536.240721	1070.46689	-0.72104	-0.00038665	-0.6413	-0.00034389	-1.3623	-0.00073054	536.2403312391336	44.108	0.45511	44.877	44.631	45.086	0.76909					11	8	2	0	0	0	0.71341	1	16388	16388		8.7454	8.7454	1	947300			5186	3638	3463	3507	5058	5058					-0.06552601212820264
DCAYKWLY	8	Unmodified	_DCAYKWLY_					0	0	0		ENSG00000162851|ENST00000366514|TFB2M	ENSG00000162851|ENST00000366514|TFB2M	ENSG00000162851|ENST00000366514|TFB2M	MSMS	A375_MHC_IP_R2	2	531.1481323242188	2	531.241678	1060.4688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.052	1	81.797	81.297	82.297	0.74474								0	0	0	0.16876	1	30778	30778		9.3474	1.4373	1				5187	6604	3464	3508	5059	5059					-0.05901263728537742
DCCPDCDGCEY	11	Unmodified	_DCCPDCDGCEY_					0	0	0		nc|ENSG00000135253|Q6ZWJ8|KCP;ENSG00000135253|ENST00000610776|KCP	nc|ENSG00000135253|Q6ZWJ8|KCP	nc|ENSG00000135253|Q6ZWJ8|KCP	MSMS	A375_MHC_IP_R1	1	611.7262573242188	2	611.661417	1221.30828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.22	1	128.22	127.72	128.72	0								0	0	0	0.1636	1	49223	49223		0	0	1				5188	4661	3465	3509	5060	5060					-0.2935209056156509
DCCPDCDGCEY	11	Unmodified	_DCCPDCDGCEY_					0	0	0		nc|ENSG00000135253|Q6ZWJ8|KCP;ENSG00000135253|ENST00000610776|KCP	nc|ENSG00000135253|Q6ZWJ8|KCP	nc|ENSG00000135253|Q6ZWJ8|KCP	MSMS	A375_MHC_IP_R1	1	611.7568359375	2	611.661417	1221.30828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.25	1	128.25	127.75	128.75	0								0	0	0	0.1636	1	49238	49238		0	0	1				5189	4661	3465	3509	5061	5061					-0.2935209056156509
DCCRSLKEPC	10	Unmodified	_DCCRSLKEPC_					0	0	0		ENST00000457283.3_1_16:30547771-30547972:+|nuORF	ENST00000457283.3_1_16:30547771-30547972:+|nuORF	ENST00000457283.3_1_16:30547771-30547972:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	577.6434936523438	2	577.243569	1152.47258	0.028856	1.6657E-05	0.61534	0.0003552	0.6442	0.00037186	577.2436502434448	72.1	0.75946	72.1	71.765	72.524	0					25	14	3	0	0	0	0.63639	1	26203	26203		18.146	1.0335	1	5048100			5190	12139	3466	3510	5062	5062					-0.09755285288633786
DCCSCQEKWV	10	Unmodified	_DCCSCQEKWV_					0	0	0		ENST00000538997.1_1_12:10460676-10464247:+|nuORF;nc|ENSG00000134539|Q13241-3|KLRD1;ENSG00000134539|ENST00000336164|KLRD1;nc|ENSG00000134539|Q13241-2|KLRD1	ENST00000538997.1_1_12:10460676-10464247:+|nuORF	ENST00000538997.1_1_12:10460676-10464247:+|nuORF	MSMS	A375_MHC_IP_R2	2	600.6692504882812	2	600.727751	1199.44095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.5	1	48.261	47.761	48.761	0.76128								0	0	0	0.15465	1	17811	17811		5.7319	0.97584	1				5191	4586	3467	3511	5063	5063					-0.1507927804261726
DCCYSDDGP	9	Unmodified	_DCCYSDDGP_					0	0	0		ENSG00000047346|ENST00000619572|ATOSA;nc|ENSG00000047346|Q32MH5-3|ATOSA;nc|ENSG00000047346|Q32MH5-2|ATOSA	ENSG00000047346|ENST00000619572|ATOSA	ENSG00000047346|ENST00000619572|ATOSA	MULTI-MSMS	A375_MHC_IP_R1	1	488.1606750488281	2	487.64695	973.279347	-0.14311	-6.9789E-05	-3.2975	-0.001608	-3.4406	-0.0016778	487.6463605757427	62.583	0.25698	62.583	62.505	62.762	0					6	4	2	0	0	0	0.72507	1	22631	22631		4.756	2.1785	1	1001000			5192	1198	3468	3512	5064	5064					-0.20836123804042472
DCDCGYHMYC	10	Unmodified	_DCDCGYHMYC_					0	0	0		DPF2|p.R350C|1|0.1|ENSG00000133884|chr11:65348880-65348880|C/T|missense_variant	DPF2|p.R350C|1|0.1|ENSG00000133884|chr11:65348880-65348880|C/T|missense_variant	DPF2|p.R350C|1|0.1|ENSG00000133884|chr11:65348880-65348880|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	605.1929321289062	2	605.177037	1208.33952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.324	1	85.324	84.824	85.824	0								0	0	0	0.15642	1	31268	31268		0	0	1				5193	789	3469	3513	5065	5065					-0.2563147273681352
DCGCNSLN	8	Unmodified	_DCGCNSLN_					0	0	0			REV__WNT7B|p.E136K|1|0.79|ENSG00000188064|chr22:45931262-45931262|C/T|missense_variant	REV__WNT7B|p.E136K|1|0.79|ENSG00000188064|chr22:45931262-45931262|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	413.1457214355469	2	413.14692	824.279288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.16	1	124.16	123.66	124.66	0								0	0	0	0.16876	1	46632	46632		2.3027	0	1		+		5194	22070	3470	3514	5066	5066					-0.13988079013392962
DCLSIMTYV	9	Unmodified	_DCLSIMTYV_					0	0	0		ENSG00000100139|ENST00000215957|MICALL1	ENSG00000100139|ENST00000215957|MICALL1	ENSG00000100139|ENST00000215957|MICALL1	MSMS	A375_MHC_IP_R2	2	522.5357055664062	2	522.740654	1043.46675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.687	1	73.423	72.923	73.923	0.73541								0	0	0	0.15486	1	27586	27586		11.64	0.81637	1				5195	2125	3471	3515	5067	5067					-0.053240605286646314
DCMCSCCSQY	10	Unmodified	_DCMCSCCSQY_					0	0	0			REV__ENSG00000172538|ENST00000311787|FAM170B	REV__ENSG00000172538|ENST00000311787|FAM170B	MSMS	A375_MHC_IP_R2	2	571.6742553710938	2	571.657623	1141.30069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.498	1	73.233	72.733	73.733	0.73541								0	0	0	0.15628	1	27513	27513		0.45834	0.057624	1		+		5196	21153	3472	3516	5068	5068					-0.2643052136284041
DCMCVEGL	8	Unmodified	_DCMCVEGL_					0	0	0		ENSG00000162490|ENST00000294485|DRAXIN	ENSG00000162490|ENST00000294485|DRAXIN	ENSG00000162490|ENST00000294485|DRAXIN	MSMS	A375_MHC_IP_R1	1	435.147216796875	2	435.163724	868.312896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.62	1	143.62	143.12	144.12	0								0	0	0	0.16876	1	55094	55094		2.5775	0.27475	1				5197	6538	3473	3517	5069	5069					-0.12652793565837328
DCMDGSDEEA	10	Unmodified	_DCMDGSDEEA_					0	0	0		ENSG00000123384|ENST00000243077|LRP1;ENST00000451724.6_1_12:57597195-57598570:+|nuORF	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MSMS	A375_MHC_IP_R2	2	536.16259765625	2	536.165704	1070.31685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.415	1	49.172	48.672	49.672	0.75737								0	0	0	0.15591	1	18180	18180		1.6526	0	1				5198	3844	3474	3518	5070	5070					-0.21549077329086685
DCNCHCSCFC	10	Unmodified	_DCNCHCSCFC_					0	0	0			REV__ENST00000472558.6_1_12:6657995-6658223:-|nuORF	REV__ENST00000472558.6_1_12:6657995-6658223:-|nuORF	MSMS	A375_MHC_IP_R1	1	567.6761474609375	2	567.650132	1133.28571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.878	1	43.878	43.378	44.378	0								0	0	0	0.15642	1	15282	15282		0	0	1		+		5199	25138	3475	3519	5071	5071					-0.2755996844018682
DCPCFCSCHC	10	Unmodified	_DCPCFCSCHC_					0	0	0		ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	MSMS	A375_MHC_IP_R1	1	559.1712036132812	2	559.155051	1116.29555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.589	1	75.589	75.089	76.089	0								0	0	0	0.15642	1	27541	27541		0	0	1				5200	12375	3476	3520	5072	5072					-0.2579478043480776
DCPWGNTS	8	Unmodified	_DCPWGNTS_					0	0	0			REV__ENST00000233813.4_1_2:217539197-217539506:-|nuORF	REV__ENST00000233813.4_1_2:217539197-217539506:-|nuORF	MSMS	A375_MHC_IP_R2	2	440.11376953125	2	440.16871	878.322867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.936	1	62.679	62.179	63.179	0.74263								0	0	0	0.16876	1	23476	23476		11.64	3.047	1		+		5201	23079	3477	3521	5073	5073					-0.12116146244602533
DCQGPRCPLY	10	Unmodified	_DCQGPRCPLY_					0	0	0		nc|ENSG00000163638|Q9P2N4-4|ADAMTS9;ENSG00000163638|ENST00000498707|ADAMTS9;nc|ENSG00000163638|Q9P2N4-1|ADAMTS9;ENST00000482490.5_1_3:64536549-64672246:-|nuORF	nc|ENSG00000163638|Q9P2N4-4|ADAMTS9	nc|ENSG00000163638|Q9P2N4-4|ADAMTS9	MULTI-SECPEP	A375_MHC_IP_R2	2	576.6520385742188	2	576.252251	1150.48995	-0.55644	-0.00032065	0.77029	0.00044388	0.21385	0.00012323	576.2526481641193	57.185	0.56087	57.935	57.712	58.273	0.75015					21	10	3	0	0	0	0.83355	1	21622	21622		22.736	22.736	1	2706600			5202	6701	3478	3522	5074	5074					-0.07927621691351305
DCRPPRWR	8	Unmodified	_DCRPPRWR_					0	0	0		ENST00000326840.10_1_3:98620151-98620508:-|nuORF	ENST00000326840.10_1_3:98620151-98620508:-|nuORF	ENST00000326840.10_1_3:98620151-98620508:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	362.9381408691406	3	362.518898	1084.53487	0.082078	2.9755E-05	-0.65271	-0.00023662	-0.57063	-0.00020686	362.51865494772176	43.85	0.50331	44.619	44.329	44.833	0.7691					21	9	3	0	0	0	0.972	1	16354	16354		9.3831	1.473	1	2848000			5203	10736	3479	3523	5075	5075					-0.004020100431489482
DCSDNSDSDND	11	Unmodified	_DCSDNSDSDND_					0	0	0		ENST00000594893.5_1_19:15511079-15529746:-|nuORF;ENST00000593845.5_1_19:15510111-15529746:-|nuORF;nc|ENSG00000011243|Q9ULX6-2|AKAP8L;ENSG00000011243|ENST00000397410|AKAP8L;ENST00000598292.1_1_19:15511553-15512083:-|nuORF	ENST00000594893.5_1_19:15511079-15529746:-|nuORF	ENST00000594893.5_1_19:15511079-15529746:-|nuORF	MSMS	A375_MHC_IP_R1	1	396.164306640625	3	396.119411	1185.3364	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.689	1	55.689	55.189	56.189	0								0	0	0	0.1636	1	19925	19925		0	0	1				5204	994	3480	3524	5076	5076					-0.24885029784627477
DCSESCCEPCC	11	Unmodified	_DCSESCCEPCC_					0	0	0		KRTAP10-10|p.P23S|1|0.3|ENSG00000221859|chr21:44637484-44637484|C/T|missense_variant	KRTAP10-10|p.P23S|1|0.3|ENSG00000221859|chr21:44637484-44637484|C/T|missense_variant	KRTAP10-10|p.P23S|1|0.3|ENSG00000221859|chr21:44637484-44637484|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	589.603515625	2	589.649995	1177.28544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.972	1	72.972	72.472	73.472	0								0	0	0	0.1636	1	26559	26559		0	0	1				5205	14236	3481	3525	5077	5077					-0.2961143295067359
DDCDDDDDDA	10	Unmodified	_DDCDDDDDDA_					0	0	0		ENSG00000189269|ENST00000317749|DRICH1	ENSG00000189269|ENST00000317749|DRICH1	ENSG00000189269|ENST00000317749|DRICH1	MSMS	A375_MHC_IP_R2	2	557.208251953125	2	557.14348	1112.27241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.094	1	93.833	93.333	94.333	0.73902								0	0	0	0.15642	1	35395	35395		0	0	1				5206	8976	3482	3526	5078	5078					-0.2792380994155792
DDCNCPCDMD	10	Unmodified	_DDCNCPCDMD_					0	0	0		ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC;nc|ENSG00000135272|Q9P1T7-1|MDFIC	ENST00000431629.5_2_7:114654517-114655986:+|nuORF	ENST00000431629.5_2_7:114654517-114655986:+|nuORF	MSMS	A375_MHC_IP_R2	2	565.6172485351562	2	565.64831	1129.28207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.909	1	28.587	28.087	29.087	0.67857								0	0	0	0.15628	1	9589	9589		0.45834	0.45834	1				5207	4663	3483	3527	5079	5079					-0.27740359733047626
DDCTGCCFDP	10	Unmodified	_DDCTGCCFDP_					0	0	0			REV__nc|ENSG00000164054|Q8N114-2|SHISA5	REV__nc|ENSG00000164054|Q8N114-2|SHISA5	MSMS	A375_MHC_IP_R2	2	538.167724609375	2	538.16191	1074.30927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.732	1	28.411	27.911	28.911	0.67857								0	0	0	0.15591	1	9515	9515		1.6526	0.17072	1		+		5208	20442	3484	3528	5080	5080					-0.2249150813036067
DDDALARSA	9	Unmodified	_DDDALARSA_					0	0	0		ENST00000423995.5_1_1:32706007-32706379:-|nuORF;ENST00000441044.5_1_1:32706007-32706920:-|nuORF	ENST00000423995.5_1_1:32706007-32706379:-|nuORF	ENST00000423995.5_1_1:32706007-32706379:-|nuORF	MSMS	A375_MHC_IP_R2	2	467.16302490234375	2	467.217246	932.419939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.393	1	56.144	55.644	56.644	0.75075								0	0	0	0.15411	1	20925	20925		14.838	5.4908	1				5209	11765	3485	3529	5081	5081					-0.04897460763959316
DDDCDDDD	8	Unmodified	_DDDCDDDD_					0	0	0		ENSG00000189269|ENST00000317749|DRICH1	ENSG00000189269|ENST00000317749|DRICH1	ENSG00000189269|ENST00000317749|DRICH1	MSMS	A375_MHC_IP_R1	1	464.00762939453125	2	464.111452	926.20835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.668	1	21.668	21.168	22.168	0								0	0	0	0.16876	1	5729	5729		2.5775	0	1				5210	8976	3486	3530	5082	5082					-0.25770545307875636
DDDCDDDD	8	Unmodified	_DDDCDDDD_					0	0	0		ENSG00000189269|ENST00000317749|DRICH1	ENSG00000189269|ENST00000317749|DRICH1	ENSG00000189269|ENST00000317749|DRICH1	MSMS	A375_MHC_IP_R2	2	464.0077209472656	2	464.111452	926.20835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.057	1	22.677	22.177	23.177	0.61932								0	0	0	0.16876	1	6985	6985		2.5775	0	1				5211	8976	3486	3530	5083	5083					-0.25770545307875636
DDDCGDGSDEV	11	Unmodified	_DDDCGDGSDEV_					0	0	0		ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.N3185Ifs*33|1|0.2|ENSG00000168702|chr2:140475211-140475211|A/-|frameshift_variant	ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	MSMS	A375_MHC_IP_R2	2	563.6683959960938	2	563.67749	1125.34043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.634	1	68.37	67.87	68.87	0.73631								0	0	0	0.16297	1	25627	25627		3.2813	1.9518	1				5212	7335	3487	3531	5084	5084					-0.21722940290919723
DDDDDDDAQI	10	Unmodified	_DDDDDDDAQI_					0	0	0		ENSG00000189269|ENST00000317749|DRICH1	ENSG00000189269|ENST00000317749|DRICH1	ENSG00000189269|ENST00000317749|DRICH1	MSMS	A375_MHC_IP_R1	1	568.703857421875	2	568.696737	1135.37892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.502	1	84.502	84.002	85.002	0								0	0	0	0.1552	1	30953	30953		3.9444	1.0552	1				5213	8976	3488	3532	5085	5085					-0.1833531138474882
DDDDDDDC	8	Unmodified	_DDDDDDDC_					0	0	0		nc|ENSG00000182621|Q9NQ66-2|PLCB1;ENSG00000182621|ENST00000338037|PLCB1	REV__ENSG00000189269|ENST00000317749|DRICH1;nc|ENSG00000182621|Q9NQ66-2|PLCB1	nc|ENSG00000182621|Q9NQ66-2|PLCB1	MSMS	A375_MHC_IP_R1	1	464.00787353515625	2	464.111452	926.20835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.25	1	22.25	21.75	22.75	0								0	0	0	0.16876	1	5952	5952		0	0	1				5214	8424;22146	3489	3533	5086	5086					-0.25770545307875636
DDDDDDDC	8	Unmodified	_DDDDDDDC_					0	0	0		nc|ENSG00000182621|Q9NQ66-2|PLCB1;ENSG00000182621|ENST00000338037|PLCB1	REV__ENSG00000189269|ENST00000317749|DRICH1;nc|ENSG00000182621|Q9NQ66-2|PLCB1	nc|ENSG00000182621|Q9NQ66-2|PLCB1	MSMS	A375_MHC_IP_R2	2	464.0076904296875	2	464.111452	926.20835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.5	1	22.119	21.619	22.619	0.61932								0	0	0	0.16876	1	6774	6774		0	0	1				5215	8424;22146	3489	3533	5087	5087					-0.25770545307875636
DDDDDDDCDDD	11	Unmodified	_DDDDDDDCDDD_					0	0	0			REV__ENSG00000189269|ENST00000317749|DRICH1	REV__ENSG00000189269|ENST00000317749|DRICH1	MSMS	A375_MHC_IP_R1	1	636.6532592773438	2	636.651866	1271.28918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.89	1	119.89	119.39	120.39	0								0	0	0	0.1636	1	44367	44367		0	0	1		+		5216	22146	3490	3534	5088	5088					-0.3356135384628942
DDDDDDDDDDD	11	Unmodified	_DDDDDDDDDDD_					0	0	0		ENSG00000273841|ENST00000217893|TAF9;ENST00000438918.1_1_2:204637659-204638058:-|nuORF;ENSG00000106819|ENST00000375544|ASPN;nc|ENSG00000105176|O94763-2|URI1;nc|ENSG00000105176|O94763-4|URI1;nc|ENSG00000105176|O94763-3|URI1;ENSG00000105176|ENST00000392271|URI1;nc|ENSG00000156802|Q6PL18-2|ATAD2;ENST00000521903.5_1_8:124361561-124413087:-|nuORF;ENSG00000130528|ENST00000252825|HRC;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2	ENSG00000273841|ENST00000217893|TAF9;REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000130528|ENST00000252825|HRC;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;REV__ENSG00000106819|ENST00000375544|ASPN	REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MSMS	A375_MHC_IP_R2	2	642.6876220703125	2	642.660745	1283.30694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.894	1	65.633	65.133	66.133	0.73811								0	0	0	0.1636	1	24603	24603		0	0	1				5217	19998;4251;6209;10000;17467	3491	3535	5089	5089					-0.32338315319793765
DDDDDDDDGDE	11	Unmodified	_DDDDDDDDGDE_					0	0	0		ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP	ENSG00000230667|ENST00000596516|SETSIP	ENSG00000230667|ENST00000596516|SETSIP	MSMS	A375_MHC_IP_R2	2	620.667236328125	2	620.665831	1239.31711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.722	1	91.457	90.957	91.957	0.7345								0	0	0	0.1636	1	34518	34518		0	0	1				5218	9719	3492	3536	5090	5090					-0.29297707594514577
DDDDDDDDY	9	Unmodified	_DDDDDDDDY_					0	0	0		ENSG00000273841|ENST00000217893|TAF9	ENSG00000273841|ENST00000217893|TAF9	ENSG00000273841|ENST00000217893|TAF9	MULTI-MSMS	A375_MHC_IP_R1	1	551.6900024414062	2	551.651995	1101.28944	-0.48269	-0.00026628	2.932	0.0016175	2.4493	0.0013512	551.6522773041966	82.978	0.30099	82.978	82.874	83.175	0					6	5	2	0	0	0	0.77154	1	30406	30406		0.6015	0.6015	1	508730			5219	10000	3493	3537	5091	5091					-0.25715566064127415
DDDDDDDDY	9	Unmodified	_DDDDDDDDY_					0	0	0		ENSG00000273841|ENST00000217893|TAF9	ENSG00000273841|ENST00000217893|TAF9	ENSG00000273841|ENST00000217893|TAF9	MSMS	A375_MHC_IP_R2	2	551.7138671875	2	551.651995	1101.28944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.488	1	90.22	89.72	90.72	0.7318								0	0	0	0.15486	1	34053	34053		0.6015	0.20078	1				5220	10000	3493	3537	5092	5092					-0.25715566064127415
DDDDDDDDY	9	Unmodified	_DDDDDDDDY_					0	0	0		ENSG00000273841|ENST00000217893|TAF9	ENSG00000273841|ENST00000217893|TAF9	ENSG00000273841|ENST00000217893|TAF9	MSMS	A375_MHC_IP_R2	2	551.6581420898438	2	551.651995	1101.28944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.35	1	93.089	92.589	93.589	0.73902								0	0	0	0.15486	1	35123	35123		0.6015	0.6015	1				5221	10000	3493	3537	5093	5093					-0.25715566064127415
DDDDDSSSEEK	11	Unmodified	_DDDDDSSSEEK_					0	0	0		nc|ENSG00000077782|P11362-21|FGFR1;ENSG00000077782|ENST00000447712|FGFR1;nc|ENSG00000077782|P11362-19|FGFR1;nc|ENSG00000077782|P11362-2|FGFR1;nc|ENSG00000077782|P11362-7|FGFR1;nc|ENSG00000077782|P11362-20|FGFR1;nc|ENSG00000077782|P11362-3|FGFR1;nc|ENSG00000077782|P11362-14|FGFR1;nc|ENSG00000077782|P11362-4|FGFR1;nc|ENSG00000077782|P11362-8|FGFR1;nc|ENSG00000077782|P11362-9|FGFR1;nc|ENSG00000077782|P11362-10|FGFR1;nc|ENSG00000077782|P11362-11|FGFR1;ENST00000470826.5_1_8:38281789-38325791:-|nuORF;ENST00000496296.5_1_8:38281789-38325791:-|nuORF;nc|ENSG00000077782|P11362-16|FGFR1;nc|ENSG00000077782|P11362-18|FGFR1;ENST00000474970.1_1_8:38285813-38287302:-|nuORF;ENST00000526570.5_1_8:38285813-38285975:-|nuORF	nc|ENSG00000077782|P11362-21|FGFR1	nc|ENSG00000077782|P11362-21|FGFR1	MSMS	A375_MHC_IP_R1	1	414.3797607421875	3	414.481115	1240.42151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.309	1	22.309	21.809	22.809	0								0	0	0	0.16338	1	5976	5976		1.1098	0.6038	1				5222	1662	3494	3538	5094	5094					-0.1890796104717083
DDDDEDTTELQ	11	Unmodified	_DDDDEDTTELQ_					0	0	0			REV__ENSG00000023516|ENST00000025301|AKAP11	REV__ENSG00000023516|ENST00000025301|AKAP11	MSMS	A375_MHC_IP_R1	1	432.6404724121094	3	432.496765	1294.46846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.766	1	43.766	43.266	44.266	0								0	0	0	0.16338	1	15235	15235		1.1098	0.33322	1		+		5223	16279	3495	3539	5095	5095					-0.16699101496033109
DDDDGDDDDDF	11	Unmodified	_DDDDGDDDDDF_					0	0	0		nc|ENSG00000172661|Q9Y4E1-5|WASHC2C;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C;nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A;ENST00000456967.5_1_10:51818876-51821299:-|nuORF	nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	MSMS	A375_MHC_IP_R1	1	629.7141723632812	2	629.678741	1257.34293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.213	1	55.213	54.713	55.713	0								0	0	0	0.16353	1	19740	19740		0.35063	0	1				5224	7728	3496	3540	5096	5096					-0.27544813352255915
DDDDNRCL	8	Unmodified	_DDDDNRCL_					0	0	0		ENSG00000110328|ENST00000227756|GALNT18	ENSG00000110328|ENST00000227756|GALNT18	ENSG00000110328|ENST00000227756|GALNT18	MULTI-SECPEP	A375_MHC_IP_R2	2	483.4720153808594	2	483.185088	964.355624	-0.45232	-0.00021855	0.83703	0.00040444	0.38471	0.00018589	483.18546190670355	43.346	0.30442	44.118	43.876	44.181	0.7724					10	5	2	0	0	0	0.972	1	16094	16094		5.2307	0.47466	1	1562900			5225	2931	3497	3541	5097	5097					-0.12797983912412292
DDDEDDDPYD	10	Unmodified	_DDDEDDDPYD_					0	0	0			REV__ENST00000557382.1_1_14:91925105-91927973:-|nuORF	REV__ENST00000557382.1_1_14:91925105-91927973:-|nuORF	MSMS	A375_MHC_IP_R1	1	606.7825317382812	2	607.186202	1212.35785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.1	1	97.1	96.6	97.6	0								0	0	0	0.15591	1	35678	35678		1.6526	0.17072	1		+		5226	17120	3498	3542	5098	5098					-0.2398332148427471
DDDNDDDDDND	11	Unmodified	_DDDNDDDDDND_					0	0	0		ENST00000366930.8_1_1:218614709-218614793:+|nuORF	ENST00000366930.8_1_1:218614709-218614793:+|nuORF	ENST00000366930.8_1_1:218614709-218614793:+|nuORF	MSMS	A375_MHC_IP_R1	1	641.5405883789062	2	641.67673	1281.33891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.568	1	79.568	79.068	80.068	0								0	0	0	0.1636	1	29045	29045		0	0	1				5227	11071	3499	3543	5099	5099					-0.2905090284596099
DDDPEDRMSY	10	Unmodified	_DDDPEDRMSY_					0	0	0		nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2	nc|ENSG00000119139|Q9UDY2-6|TJP2	nc|ENSG00000119139|Q9UDY2-6|TJP2	MULTI-MSMS	A375_MHC_IP_R1	1	415.224365234375	3	414.824159	1241.45065	0.40778	0.00016916	0.13287	5.5116E-05	0.54065	0.00022427	414.8243573768534	47.648	0.55408	47.648	47.366	47.92	0					18	10	3	0	0	0	0.72321	1	16761	16761		1.9064	0.1641	1	2559400			5228	14565	3500	3544	5100	5100					-0.1604209523186455
DDDPEDRMSY	10	Unmodified	_DDDPEDRMSY_					0	0	0		nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2	nc|ENSG00000119139|Q9UDY2-6|TJP2	nc|ENSG00000119139|Q9UDY2-6|TJP2	MULTI-MSMS	A375_MHC_IP_R2	2	415.55853271484375	3	414.824159	1241.45065	0.19427	8.0587E-05	0.20859	8.6529E-05	0.40286	0.00016712	415.158516033444	46.903	0.71174	47.664	47.412	48.123	0.76128					23	13	3	0	0	0	0.72321	1	17588	17588		1.9064	0.1641	1	3341200			5229	14565	3500	3544	5101	5101					-0.1604209523186455
DDDPEDRMSY	10	Unmodified	_DDDPEDRMSY_					0	0	0		nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2	nc|ENSG00000119139|Q9UDY2-6|TJP2	nc|ENSG00000119139|Q9UDY2-6|TJP2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	414.824159	1241.45065	0.40778	0.00016916	0.13287	5.5116E-05	0.54065	0.00022427	414.8243573768534	47.648	0.55408	47.648	47.366	47.92	0	-0.007802	-5.387E-05	NaN	1.9064	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2559400			5230	14565	3500	3544							-0.1604209523186455
DDDYDGIDMV	10	Unmodified	_DDDYDGIDMV_					0	0	0			REV__ERICH6|p.T82M|1|0.4|ENSG00000163645|chr3:150703654-150703654|G/A|missense_variant	REV__ERICH6|p.T82M|1|0.4|ENSG00000163645|chr3:150703654-150703654|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	579.1978149414062	2	579.218794	1156.42303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.493	1	65.493	64.993	65.993	0								0	0	0	0.15435	1	23711	23711		6.7232	0.51738	1		+		5231	26592	3501	3545	5102	5102					-0.1489199849211218
DDEEEDYEDY	10	Unmodified	_DDEEEDYEDY_					0	0	0			REV__nc|ENSG00000134532|P35711-4|SOX5	REV__nc|ENSG00000134532|P35711-4|SOX5	MSMS	A375_MHC_IP_R1	1	661.2628173828125	2	661.21496	1320.41537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.91	1	106.91	106.41	107.41	0								0	0	0	0.15628	1	39237	39237		0.45834	0	1		+		5232	18785	3502	3546	5103	5103					-0.2320247927868877
DDEPVNSQY	9	Unmodified	_DDEPVNSQY_					0	0	0		nc|ENSG00000147231|Q6NSI4-3|RADX;nc|ENSG00000147231|Q6NSI4-4|RADX;ENSG00000147231|ENST00000372548|RADX	nc|ENSG00000147231|Q6NSI4-3|RADX	nc|ENSG00000147231|Q6NSI4-3|RADX	MULTI-MSMS	A375_MHC_IP_R2	2	533.6912841796875	2	533.719818	1065.42508	-1.0875	-0.00058043	-0.79386	-0.0004237	-1.8814	-0.0010041	533.7193446216742	26.64	0.56157	27.3	27.058	27.62	0.65992					14	10	2	0	0	0	0.69674	1	9029	9029		7.2892	2.96	1	2424900			5233	5671	3503	3547	5104	5104					-0.10501201691977258
DDESYTGSSYQ	11	Unmodified	_DDESYTGSSYQ_					0	0	0		ENST00000540578.6_1_18:9182415-9235682:+|nuORF	ENST00000540578.6_1_18:9182415-9235682:+|nuORF	ENST00000540578.6_1_18:9182415-9235682:+|nuORF	MSMS	A375_MHC_IP_R1	1	626.2164916992188	2	626.236029	1250.45751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.02	1	99.02	98.52	99.52	0								0	0	0	0.16258	1	36377	36377		5.2969	1.3525	1				5234	13271	3504	3548	5105	5105					-0.15770459079635657
DDEYSDDDDM	10	Unmodified	_DDEYSDDDDM_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-3|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MSMS	A375_MHC_IP_R1	1	610.182373046875	2	610.182605	1218.35066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.045	1	79.045	78.545	79.545	0								0	0	0	0.15629	1	28851	28851		0.40072	0.40072	1				5235	2996	3505	3549	5106	5106					-0.24978377356342207
DDFCRICED	9	Unmodified	_DDFCRICED_					0	0	0		ENST00000504961.1_1_5:112312516-112319704:+|nuORF	ENST00000504961.1_1_5:112312516-112319704:+|nuORF	ENST00000504961.1_1_5:112312516-112319704:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	372.46240234375	3	372.475925	1114.40594	0.053714	2.0007E-05	-0.28245	-0.00010521	-0.22874	-8.5199E-05	372.4757694744555	26.323	0.45803	26.983	26.754	27.212	0.65992					13	8	2	0	0	0	0.77154	1	8857	8857		0.26902	0	1	6917300			5236	12831	3506	3550	5107	5107					-0.14668197578907893
DDFDDDENDDD	11	Unmodified	_DDFDDDENDDD_					0	0	0			REV__ENST00000415681.1_1_6:55804812-55805085:-|nuORF	REV__ENST00000415681.1_1_6:55804812-55805085:-|nuORF	MSMS	A375_MHC_IP_R1	1	665.5966796875	2	665.197298	1328.38004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.66	1	17.66	17.16	18.16	0								0	0	0	0.1636	1	4154	4154		0	0	1		+		5237	24521	3507	3551	5108	5108					-0.27101141806497253
DDFDDDENDDD	11	Unmodified	_DDFDDDENDDD_					0	0	0			REV__ENST00000415681.1_1_6:55804812-55805085:-|nuORF	REV__ENST00000415681.1_1_6:55804812-55805085:-|nuORF	MSMS	A375_MHC_IP_R1	1	665.5972900390625	2	665.197298	1328.38004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.506	1	18.506	18.006	19.006	0								0	0	0	0.1636	1	4412	4412		0	0	1		+		5238	24521	3507	3551	5109	5109					-0.27101141806497253
DDFDNDNIPD	10	Unmodified	_DDFDNDNIPD_					0	0	0		ENSG00000186340|ENST00000617924|THBS2	ENSG00000186340|ENST00000617924|THBS2	ENSG00000186340|ENST00000617924|THBS2	MULTI-MSMS	A375_MHC_IP_R2	2	394.5545959472656	3	393.819402	1178.43638	0.015048	5.926E-06	2.4902	0.00098069	2.5052	0.00098661	394.15473262751965	111.19	0.56375	111.92	111.6	112.16	0.73692					35	10	5	0	0	0	0.71245	1	41958	41958		3.5871	0	1	3159400			5239	8742	3508	3552	5110	5110					-0.14570424388512038
DDFEELLEVQQ	11	Unmodified	_DDFEELLEVQQ_					0	0	0		ENSG00000151240|ENST00000280886|DIP2C;ENSG00000160305|ENST00000417564|DIP2A;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;ENST00000494435.5_1_21:47924311-47965916:+|nuORF;nc|ENSG00000160305|Q14689-5|DIP2A	ENSG00000151240|ENST00000280886|DIP2C;ENSG00000160305|ENST00000417564|DIP2A	ENSG00000160305|ENST00000417564|DIP2A	MULTI-MSMS	A375_MHC_IP_R2	2	683.214599609375	2	682.814447	1363.61434	-0.9518	-0.0006499	0.90576	0.00061846	-0.046043	-3.1439E-05	682.8151674805106	60.948	0.50475	61.693	61.364	61.869	0.74503					22	9	3	0	0	0	0.73135	1	23056	23056		7.609	0.50723	1	6153200			5240	5890;6415	3509	3553	5111	5111					-0.05292174189321486
DDFIRSYF	8	Unmodified	_DDFIRSYF_					0	0	0			REV__C6|p.L353F|1|0.13|ENSG00000039537|chr5:41176584-41176584|C/G|missense_variant	REV__C6|p.L353F|1|0.13|ENSG00000039537|chr5:41176584-41176584|C/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	532.2006225585938	2	531.748182	1061.48181	-0.59191	-0.00031475	2.616	0.0013911	2.0241	0.0010763	531.751159281783	81.581	0.25324	81.581	81.353	81.607	0					5	4	2	0	0	0	0.75805	1	29781	29781		18.135	3.2967	1	894150	+		5241	15544	3510	3554	5112	5112					-0.046471093448190004
DDGDCVCEGPF	11	Unmodified	_DDGDCVCEGPF_					0	0	0			REV__ENST00000369781.8_3_1:110925517-110931892:-|nuORF	REV__ENST00000369781.8_3_1:110925517-110931892:-|nuORF	MSMS	A375_MHC_IP_R1	1	578.7002563476562	2	578.699714	1155.38487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.33	1	104.33	103.83	104.83	0								0	0	0	0.16297	1	38311	38311		3.2813	0.39209	1		+		5242	24019	3511	3555	5113	5113					-0.18660207678431107
DDGDDDDDDD	10	Unmodified	_DDGDDDDDDD_					0	0	0			REV__ENST00000483012.1_1_7:148516133-148534012:-|nuORF	REV__ENST00000483012.1_1_7:148516133-148534012:-|nuORF	MSMS	A375_MHC_IP_R2	2	556.205810546875	2	556.144534	1110.27452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.604	1	63.347	62.847	63.847	0.74263								0	0	0	0.15642	1	23729	23729		0	0	1		+		5243	17451	3512	3556	5114	5114					-0.2762105793210594
DDGEDDMGL	9	Unmodified	_DDGEDDMGL_					0	0	0			REV__nc|ENSG00000113558|P63208-2|SKP1	REV__nc|ENSG00000113558|P63208-2|SKP1	MSMS	A375_MHC_IP_R2	2	483.6498718261719	2	483.671479	965.328406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.552	1	83.294	82.794	83.794	0.74293								0	0	0	0.15486	1	31358	31358		8.5933	0	1		+		5244	17786	3513	3557	5115	5115					-0.15564512243417994
DDIFCDILN	9	Unmodified	_DDIFCDILN_					0	0	0			REV__DNAH7|p.M1824I|1|0.09|ENSG00000118997|chr2:195886207-195886207|C/T|missense_variant	REV__DNAH7|p.M1824I|1|0.09|ENSG00000118997|chr2:195886207-195886207|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	534.5589599609375	2	534.239332	1066.46411	-0.81359	-0.00043465	-0.94801	-0.00050647	-1.7616	-0.00094112	534.2384071947437	107.65	0.45955	108.4	108.2	108.66	0.75436					13	8	2	0	0	0	0.6656	1	40708	40708		10.074	2.1638	1	705630	+		5245	16015	3514	3558	5116	5116					-0.06646192661969508
DDIIDDVII	9	Unmodified	_DDIIDDVII_					0	0	0			REV__nc|ENSG00000141127|O60256-4|PRPSAP2	REV__nc|ENSG00000141127|O60256-4|PRPSAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	515.455078125	2	515.76878	1029.52301	-0.39634	-0.00020442	3.4494	0.0017791	3.053	0.0015747	515.7704648692719	54.338	0.60724	54.338	54.113	54.72	0					13	11	2	0	0	0	0.43707	1	19389	19389		36.044	24.404	1	1335200	+		5246	19247	3515	3559	5117	5117					0.009426069040046059
DDIKDLKV	8	Unmodified	_DDIKDLKV_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-MSMS	A375_MHC_IP_R1	1	473.665771484375	2	473.266207	944.517862	-0.63524	-0.00030064	0.40267	0.00019057	-0.23257	-0.00011007	473.26643507536136	66.279	0.40547	66.279	66.072	66.478	0					11	7	2	0	0	0	0.34256	1	24020	24020		55.503	17.327	1	1924600			5247	6139	3516	3560	5118	5118					0.04338347832049294
DDIKDLKV	8	Unmodified	_DDIKDLKV_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-MSMS	A375_MHC_IP_R2	2	473.66583251953125	2	473.266207	944.517862	-0.6941	-0.00032849	0.23608	0.00011173	-0.45802	-0.00021677	473.26631920256307	65.423	0.70889	66.161	65.817	66.526	0.73812					16	13	2	0	0	0	0.16659	1	24823	24823		76.825	19.103	1	2092700			5248	6139	3516	3560	5119	5119					0.04338347832049294
DDINRNSSCI	10	Unmodified	_DDINRNSSCI_					0	0	0			REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1	REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	569.2088623046875	2	568.753669	1135.49279	-0.27595	-0.00015695	2.8182	0.0016029	2.5423	0.0014459	569.257249765768	109.06	0.25661	109.8	109.62	109.88	0.74684					6	4	2	0	0	0	0.87163	1	41185	41185		19.257	1.1106	1	308580	+		5249	28658	3517	3561	5120	5120					-0.06954075032831497
DDIPQGERKTV	11	Unmodified	_DDIPQGERKTV_					0	0	0		ENSG00000173611|ENST00000336505|SCAI;nc|ENSG00000173611|Q8N9R8-2|SCAI	ENSG00000173611|ENST00000336505|SCAI	ENSG00000173611|ENST00000336505|SCAI	MULTI-SECPEP	A375_MHC_IP_R2	2	420.3099060058594	3	419.88597	1256.63608	0.022069	9.2663E-06	0.68039	0.00028569	0.70246	0.00029495	419.88502898192706	48.026	0.40155	48.787	48.532	48.933	0.76127					12	7	2	0	0	0	0.9907	1	17954	17954		9.2438	5.6511	1	921770			5250	7815	3518	3562	5121	5121					0.018026753498816106
DDISGFKENY	10	Unmodified	_DDISGFKENY_					0	0	0		KAT2B|p.Y278F|1|0.18|ENSG00000114166|chr3:20101450-20101450|A/T|missense_variant	KAT2B|p.Y278F|1|0.18|ENSG00000114166|chr3:20101450-20101450|A/T|missense_variant	KAT2B|p.Y278F|1|0.18|ENSG00000114166|chr3:20101450-20101450|A/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	594.6642456054688	2	594.264393	1186.51423	-0.70562	-0.00041932	0.41443	0.00024628	-0.29118	-0.00017304	594.2645218259505	62.318	0.50974	63.061	62.824	63.333	0.74263					20	9	3	0	0	0	0.70651	1	23611	23611		9.3831	0.63772	1	2131300			5251	14188	3519	3563	5122	5122					-0.07156366732488095
DDISGFKENY	10	Unmodified	_DDISGFKENY_					0	0	0		KAT2B|p.Y278F|1|0.18|ENSG00000114166|chr3:20101450-20101450|A/T|missense_variant	KAT2B|p.Y278F|1|0.18|ENSG00000114166|chr3:20101450-20101450|A/T|missense_variant	KAT2B|p.Y278F|1|0.18|ENSG00000114166|chr3:20101450-20101450|A/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	594.264393	1186.51423	-0.28762	-0.00017092	0.18777	0.00011159	-0.099841	-5.9332E-05	594.2644856799562	62.953	0.56356	62.953	62.66	63.223	0	-0.05383	-0.00016369	NaN	9.3831	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2132300			5252	14188	3519	3563							-0.07156366732488095
DDISGFKENY	10	Unmodified	_DDISGFKENY_					0	0	0		KAT2B|p.Y278F|1|0.18|ENSG00000114166|chr3:20101450-20101450|A/T|missense_variant	KAT2B|p.Y278F|1|0.18|ENSG00000114166|chr3:20101450-20101450|A/T|missense_variant	KAT2B|p.Y278F|1|0.18|ENSG00000114166|chr3:20101450-20101450|A/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	594.264393	1186.51423	-0.70562	-0.00041932	0.41443	0.00024628	-0.29118	-0.00017304	594.2645218259505	62.318	0.50974	63.061	62.824	63.333	0.74263	0.05383	0.0001057	NaN	9.3831	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2131300			5253	14188	3519	3563							-0.07156366732488095
DDISGYKENYT	11	Unmodified	_DDISGYKENYT_					0	0	0		ENSG00000114166|ENST00000263754|KAT2B	ENSG00000114166|ENST00000263754|KAT2B	ENSG00000114166|ENST00000263754|KAT2B	MULTI-SECPEP	A375_MHC_IP_R1	1	653.1857299804688	2	652.785689	1303.55683	-0.27809	-0.00018154	0.020661	1.3487E-05	-0.25743	-0.00016805	652.7858020836821	43.431	0.5088	43.431	43.146	43.655	0					16	9	2	0	0	0	0.99424	1	15148	15148		8.1555	0	1	3435000			5254	3202	3520	3564	5123	5123					-0.0828101639488068
DDKHMFKQF	9	Unmodified	_DDKHMFKQF_					0	0	0		ENSG00000179632|ENST00000322428|MAF1	ENSG00000179632|ENST00000322428|MAF1	ENSG00000179632|ENST00000322428|MAF1	MULTI-SECPEP	A375_MHC_IP_R1	1	398.9211120605469	3	399.190336	1194.54918	-0.30517	-0.00012182	1.8734	0.00074783	1.5682	0.00062601	399.19112026739754	28.287	0.55478	28.287	28.037	28.592	0					16	10	2	0	0	0	0.78348	1	8785	8785		4.897	2.3985	1	2226600			5255	8243	3521	3565	5124	5124					-0.04031402405530571
DDKLYELSEYV	11	Unmodified	_DDKLYELSEYV_					0	0	0			REV__tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1	REV__tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1	MSMS	A375_MHC_IP_R1	1	458.6339111328125	3	458.553886	1372.63983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.992	1	26.992	26.492	27.492	0								0	0	0	0.16309	1	8121	8121		2.6312	0	1		+		5256	28872	3522	3566	5125	5125					-0.03158699666892062
DDLEKLEAL	9	Unmodified	_DDLEKLEAL_					0	0	0		nc|ENSG00000119778|Q9ULI0-2|ATAD2B;ENSG00000119778|ENST00000238789|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-SECPEP	A375_MHC_IP_R2	2	523.7235107421875	2	523.274229	1044.53391	-0.45491	-0.00023804	1.5515	0.00081184	1.0966	0.0005738	523.2730182525723	91.311	0.81045	92.045	91.463	92.273	0.7345					22	15	3	0	0	0	0.58271	1	34631	34631		20.454	4.6064	1	1079200			5257	3622	3523	3567	5126	5126					0.013420092782780557
DDLFRTPTL	9	Unmodified	_DDLFRTPTL_					0	0	0			REV__ENST00000601061.1_1_19:7712126-7712693:+|nuORF	REV__ENST00000601061.1_1_19:7712126-7712693:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	359.2972717285156	3	359.857351	1076.55022	-0.5359	-0.00019285	0.25063	9.0191E-05	-0.28527	-0.00010266	359.8574621824179	33.367	0.35612	34.12	33.942	34.298	0.75225					13	6	3	0	0	0	0.60917	1	11904	11904		18.373	8.2225	1	2149200	+		5258	16684	3524	3568	5127	5127					0.01501135235048423
DDNDNAPYF	9	Unmodified	_DDNDNAPYF_					0	0	0		nc|ENSG00000134765|Q08554-2|DSC1;ENSG00000134765|ENST00000257198|DSC1;DSC1|p.E243K|1|0.38|ENSG00000134765|chr18:31148543-31148543|C/T|missense_variant;DSC1|p.E233K|1|0.25|ENSG00000134765|chr18:31148573-31148573|C/T|missense_variant	nc|ENSG00000134765|Q08554-2|DSC1	nc|ENSG00000134765|Q08554-2|DSC1	MSMS	A375_MHC_IP_R1	1	535.6596069335938	2	535.706711	1069.39887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.956	1	62.956	62.456	63.456	0								0	0	0	0.15486	1	22746	22746		4.3292	0.38484	1				5259	4606	3525	3569	5128	5128					-0.1330547086347451
DDNDNAPYF	9	Unmodified	_DDNDNAPYF_					0	0	0		nc|ENSG00000134765|Q08554-2|DSC1;ENSG00000134765|ENST00000257198|DSC1;DSC1|p.E243K|1|0.38|ENSG00000134765|chr18:31148543-31148543|C/T|missense_variant;DSC1|p.E233K|1|0.25|ENSG00000134765|chr18:31148573-31148573|C/T|missense_variant	nc|ENSG00000134765|Q08554-2|DSC1	nc|ENSG00000134765|Q08554-2|DSC1	MSMS	A375_MHC_IP_R1	1	535.6873779296875	2	535.706711	1069.39887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.997	1	62.997	62.497	63.497	0								0	0	0	0.15486	1	22762	22762		4.3292	0	1				5260	4606	3525	3569	5129	5129					-0.1330547086347451
DDNPNLPR	8	Unmodified	_DDNPNLPR_					0	0	0		nc|ENSG00000163631|P02768-3|ALB;ENSG00000163631|ENST00000295897|ALB;CON__P02768-1	nc|ENSG00000163631|P02768-3|ALB	nc|ENSG00000163631|P02768-3|ALB	MULTI-SECPEP	A375_MHC_IP_R1	1	470.7998046875	2	470.727781	939.441008	-0.70295	-0.0003309	-0.25603	-0.00012052	-0.95898	-0.00045142	470.7278462027391	26.296	0.45675	26.296	26.118	26.575	0					13	8	2	0	0	0	0.9187	1	7836	7836		25.399	16.806	1	2501100		+	5261	585	3526	3570	5130	5130					-0.03113450664420725
DDPDEAQY	8	Unmodified	_DDPDEAQY_					0	0	0			REV__PLXNB3|p.G159D|1|0.41|ENSG00000198753|chrX:153767303-153767303|G/A|missense_variant	REV__PLXNB3|p.G159D|1|0.41|ENSG00000198753|chrX:153767303-153767303|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	476.64215087890625	2	476.680162	951.345771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.247	1	53.998	53.498	54.498	0.75105								0	0	0	0.16876	1	20089	20089		5.7604	1.0044	1		+		5262	27811	3527	3571	5131	5131					-0.1318484864613083
DDPDPIRG	8	Unmodified	_DDPDPIRG_					0	0	0			REV__ENSG00000135063|ENST00000303068|ENTREP1	REV__ENSG00000135063|ENST00000303068|ENTREP1	MSMS	A375_MHC_IP_R1	1	442.5748291015625	2	442.709057	883.40356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.136	1	19.136	18.636	19.636	0								0	0	0	0.16876	1	4609	4609		0.69038	0	1		+		5263	18820	3528	3572	5132	5132					-0.04280541930029358
DDPEVEQVR	9	Unmodified	_DDPEVEQVR_					0	0	0		ENST00000483774.1_1_17:41108336-41109171:-|nuORF	ENST00000483774.1_1_17:41108336-41109171:-|nuORF	ENST00000483774.1_1_17:41108336-41109171:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	543.7037353515625	2	543.756735	1085.49892	-1.2246	-0.00066588	1.3878	0.0007546	0.16316	8.8719E-05	543.757228774472	56.614	0.66128	57.364	57.051	57.712	0.75014					16	12	2	0	0	0	0.41409	1	21357	21357		24.021	1.2843	1	1456500			5264	12547	3529	3573	5133	5133					-0.04041233529665078
DDQFHEEL	8	Unmodified	_DDQFHEEL_					0	0	0			REV__DEF6|p.R56Q|1|0.28|ENSG00000023892|chr6:35309740-35309740|G/A|missense_variant	REV__DEF6|p.R56Q|1|0.28|ENSG00000023892|chr6:35309740-35309740|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	516.684326171875	2	516.717079	1031.4196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.827	1	73.827	73.327	74.327	0								0	0	0	0.16876	1	26888	26888		14.582	0	1		+		5265	15982	3530	3574	5134	5134					-0.09484880483796587
DDRDSPVFW	9	Unmodified	_DDRDSPVFW_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MSMS	A375_MHC_IP_R1	1	568.7109985351562	2	568.753995	1135.49344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.439	1	74.439	73.939	74.939	0								0	0	0	0.15486	1	27113	27113		7.9102	0.62092	1				5266	6535	3531	3575	5135	5135					-0.06888912321460339
DDRTPDVI	8	Unmodified	_DDRTPDVI_					0	0	0		ENSG00000169359|ENST00000643144|SLC33A1;SLC33A1|p.L269*|1|0.14|ENSG00000169359|chr3:155842589-155842589|A/-|frameshift_variant	ENSG00000169359|ENST00000643144|SLC33A1	ENSG00000169359|ENST00000643144|SLC33A1	MULTI-MSMS	A375_MHC_IP_R1	1	466.1298522949219	2	465.729989	929.445425	-0.091163	-4.2458E-05	-0.42076	-0.00019596	-0.51193	-0.00023842	465.72995238693306	51.859	1.5728	51.859	50.764	52.336	0					52	30	3	0	0	0	0.51581	1	18355	18355		48.346	2.3249	1	12990000			5267	7402	3532	3576	5136	5136					-0.022119862415138414
DDSARFLEY	9	Unmodified	_DDSARFLEY_					0	0	0		nc|ENSG00000196296|O14983|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983-3|ATP2A1	nc|ENSG00000196296|O14983|ATP2A1	nc|ENSG00000196296|O14983|ATP2A1	MULTI-MSMS	A375_MHC_IP_R2	2	558.2319946289062	2	558.253828	1114.4931	-0.92268	-0.00051509	1.0489	0.00058554	0.12619	7.0449E-05	558.7573999004171	50.155	0.60988	50.909	50.65	51.26	0.75406					13	11	2	0	0	0	0.65721	1	18784	18784		10.824	0.64053	1	1128600			5268	9024	3533	3577	5137	5137					-0.05956332041341739
DDSDDEDDDES	11	Unmodified	_DDSDDEDDDES_					0	0	0			REV__ENSG00000084463|ENST00000261167|WBP11	REV__ENSG00000084463|ENST00000261167|WBP11	MSMS	A375_MHC_IP_R2	2	628.7371826171875	2	628.681481	1255.34841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.24	1	106.01	105.51	106.51	0.76308								0	0	0	0.1636	1	39809	39809		0	0	1		+		5269	16822	3534	3578	5138	5138					-0.2690513456043391
DDSDFRELHI	10	Unmodified	_DDSDFRELHI_					0	0	0		RTN2|p.T39I|1|0.43|ENSG00000125744|chr19:45494969-45494969|G/A|missense_variant	RTN2|p.T39I|1|0.43|ENSG00000125744|chr19:45494969-45494969|G/A|missense_variant	RTN2|p.T39I|1|0.43|ENSG00000125744|chr19:45494969-45494969|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	623.741943359375	2	623.788566	1245.56258	-0.79446	-0.00049558	0.63268	0.00039466	-0.16179	-0.00010092	623.7891902668341	44.469	0.86636	45.238	44.934	45.8	0.7691					28	16	3	0	0	0	0.70651	1	16518	16518		9.3831	0.035688	1	2751400			5270	29096	3535	3579	5139	5139					-0.05037873092555856
DDSLPPGSV	9	Unmodified	_DDSLPPGSV_					0	0	0			REV__nc|ENSG00000138769|Q92772|CDKL2	REV__nc|ENSG00000138769|Q92772|CDKL2	MULTI-MSMS	A375_MHC_IP_R2	2	443.67364501953125	2	443.711265	885.407977	-0.96587	-0.00042857	0.81883	0.00036332	-0.14704	-6.5243E-05	443.7114811313128	36.881	0.60919	37.652	37.359	37.968	0.7709					16	11	2	0	0	0	0.63811	1	13575	13575		12.532	0	1	1557200	+		5271	19120	3536	3580	5140	5140					-0.039310775071271564
DDSPDLPK	8	Unmodified	_DDSPDLPK_					0	0	0		CON__P02769	CON__P02769	CON__P02769	MULTI-MSMS	A375_MHC_IP_R1	1	443.67919921875	2	443.711265	885.407977	-0.11998	-5.3234E-05	-0.54966	-0.00024389	-0.66963	-0.00029712	443.71113013533375	28.719	0.35299	28.719	28.643	28.996	0					9	6	2	0	0	0	0.77583	1	8955	8955		10.074	3.8681	1	713650		+	5272	586	3537	3581	5141	5141					-0.039310775071271564
DDSRDETY	8	Unmodified	_DDSRDETY_					0	0	0		ZFP91|p.P230S|1|0.44|ENSG00000186660|chr11:58611020-58611020|C/T|missense_variant	ZFP91|p.P230S|1|0.44|ENSG00000186660|chr11:58611020-58611020|C/T|missense_variant	ZFP91|p.P230S|1|0.44|ENSG00000186660|chr11:58611020-58611020|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	500.6761779785156	2	500.696343	999.378133	-0.97128	-0.00048631	-0.59474	-0.00029778	-1.566	-0.0007841	500.6959892919986	59.003	0.76072	59.75	59.387	60.148	0.74714					22	14	2	0	0	0	0.77717	1	22322	22322		5.2307	5.2307	1	2147400			5273	30199	3538	3582	5142	5142					-0.12158061243133034
DDVDFCDP	8	Unmodified	_DDVDFCDP_					0	0	0		ENST00000594696.1_1_19:8555075-8556051:-|nuORF;ENSG00000133246|ENST00000423345|PRAM1	ENST00000594696.1_1_19:8555075-8556051:-|nuORF	ENST00000594696.1_1_19:8555075-8556051:-|nuORF	MSMS	A375_MHC_IP_R1	1	463.1610412597656	2	463.165833	924.317113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.96	1	43.96	43.46	44.46	0								0	0	0	0.16876	1	15314	15314		0.79363	0	1				5274	4496	3539	3583	5143	5143					-0.14807289546922675
DDVFVNGISQ	10	Unmodified	_DDVFVNGISQ_					0	0	0		tr|U7SLS6|U7SLS6_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02155PE=3SV=1	tr|U7SLS6|U7SLS6_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02155PE=3SV=1	tr|U7SLS6|U7SLS6_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02155PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	547.7160034179688	2	547.261653	1092.50875	-1.283	-0.00070211	-0.40594	-0.00022216	-1.6889	-0.00092427	547.2614805744157	53.66	0.71774	54.411	54.046	54.764	0.75105					22	13	2	0	0	0	0.70179	1	20310	20310		11.495	0.67078	1	3307600			5275	29511	3540	3584	5144	5144					-0.03380045524272646
DDVNSFSQV	9	Unmodified	_DDVNSFSQV_					0	0	0			REV__ENST00000504745.1_1_4:113347516-113362363:+|nuORF	REV__ENST00000504745.1_1_4:113347516-113362363:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	505.6815490722656	2	505.724904	1009.43525	-0.91855	-0.00046453	-0.10896	-5.5106E-05	-1.0275	-0.00051964	505.7248595918536	40.825	0.6611	41.599	41.285	41.946	0.77451					19	12	2	0	0	0	0.38603	1	15045	15045		25.399	0.72543	1	3504000	+		5276	16618	3541	3585	5145	5145					-0.06908593966750232
DDVSFGLHRY	10	Unmodified	_DDVSFGLHRY_					0	0	0			REV__ENST00000531489.1_1_11:34356761-34356935:-|nuORF	REV__ENST00000531489.1_1_11:34356761-34356935:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	402.9338073730469	3	403.528005	1207.56219	-0.14712	-5.9366E-05	-2.1701	-0.00087568	-2.3172	-0.00093505	403.5267069685015	21.663	0.35438	21.663	21.454	21.808	0					13	6	3	0	0	0	0.91442	1	5769	5769		7.0371	3.9648	1	2213900	+		5277	25851	3542	3586	5146	5146					-0.033292480217596676
DDYNSDSSL	9	Unmodified	_DDYNSDSSL_					0	0	0		nc|ENSG00000053108|Q6MZW2-3|FSTL4;ENSG00000053108|ENST00000265342|FSTL4	nc|ENSG00000053108|Q6MZW2-3|FSTL4	nc|ENSG00000053108|Q6MZW2-3|FSTL4	MSMS	A375_MHC_IP_R1	1	508.1681823730469	2	508.196176	1014.3778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.629	1	74.629	74.129	75.129	0								0	0	0	0.15486	1	27185	27185		7.9102	1.5561	1				5278	1243	3543	3587	5147	5147					-0.12881480962971636
DDYNSDSSL	9	Unmodified	_DDYNSDSSL_					0	0	0		nc|ENSG00000053108|Q6MZW2-3|FSTL4;ENSG00000053108|ENST00000265342|FSTL4	nc|ENSG00000053108|Q6MZW2-3|FSTL4	nc|ENSG00000053108|Q6MZW2-3|FSTL4	MSMS	A375_MHC_IP_R1	1	508.1668395996094	2	508.196176	1014.3778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.933	1	74.933	74.433	75.433	0								0	0	0	0.15486	1	27297	27297		7.9102	1.5561	1				5279	1243	3543	3587	5148	5148					-0.12881480962971636
DEAAISKLY	9	Unmodified	_DEAAISKLY_					0	0	0		ENSG00000052749|ENST00000370992|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;nc|ENSG00000052749|Q5JTH9-2|RRP12;ENST00000479481.5_1_10:99131673-99132940:-|nuORF	ENSG00000052749|ENST00000370992|RRP12	ENSG00000052749|ENST00000370992|RRP12	MULTI-SECPEP	A375_MHC_IP_R2	2	505.6531066894531	2	505.263665	1008.51278	-1.0132	-0.00051193	0.087203	4.406E-05	-0.92599	-0.00046787	505.2637104680818	60.338	0.56269	61.083	60.751	61.314	0.74503					19	10	2	0	0	0	0.57304	1	22770	22770		29.841	9.387	1	3185100			5280	1240	3544	3588	5149	5149					0.008860439694217348
DEAEQSSDEL	10	Unmodified	_DEAEQSSDEL_					0	0	0			REV__nc|ENSG00000083454|Q93086|P2RX5	REV__nc|ENSG00000083454|Q93086|P2RX5	MSMS	A375_MHC_IP_R2	2	561.695068359375	2	561.725298	1121.43604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.75	1	101.52	101.02	102.02	0.76278								0	0	0	0.15308	1	38198	38198		10.824	0.75	1		+		5281	27125	3545	3589	5150	5150					-0.11981844108345285
DEAEVHLKF	9	Unmodified	_DEAEVHLKF_					0	0	0		nc|ENSG00000007237|O60861-2|GAS7;nc|ENSG00000007237|O60861-1|GAS7;nc|ENSG00000007237|O60861-4|GAS7;ENSG00000007237|ENST00000432992|GAS7	nc|ENSG00000007237|O60861-2|GAS7	nc|ENSG00000007237|O60861-2|GAS7	MULTI-SECPEP	A375_MHC_IP_R1	1	362.5976257324219	3	363.185468	1086.53457	0.023099	8.3893E-06	-0.1594	-5.7893E-05	-0.1363	-4.9503E-05	363.18534634044755	53.042	0.55605	53.042	52.796	53.352	0					24	10	3	0	0	0	0.59614	1	18920	18920		28.495	15.622	1	4180700			5282	939	3546	3590	5151	5151					-0.005231512819818818
DEAHAESTV	9	Unmodified	_DEAHAESTV_					0	0	0			REV__ENSG00000065989|ENST00000380702|PDE4A	REV__ENSG00000065989|ENST00000380702|PDE4A	MULTI-SECPEP	A375_MHC_IP_R1	1	480.1095275878906	2	479.709254	957.403954	-0.4771	-0.00022887	0.66428	0.00031866	0.18718	8.9794E-05	479.7095083529407	34.549	0.55579	34.549	34.203	34.759	0					18	10	2	0	0	0	0.24479	1	11389	11389		50.855	18.55	1	5334100	+		5283	16507	3547	3591	5152	5152					-0.07645167000850961
DEAHAESTV	9	Unmodified	_DEAHAESTV_					0	0	0			REV__ENSG00000065989|ENST00000380702|PDE4A	REV__ENSG00000065989|ENST00000380702|PDE4A	MULTI-SECPEP	A375_MHC_IP_R2	2	480.1094665527344	2	479.709254	957.403954	-1.0827	-0.0005194	0.92085	0.00044174	-0.16189	-7.766E-05	479.7098095236915	33.808	0.55676	34.56	34.196	34.753	0.75225					20	10	3	0	0	0	0.3243	1	12120	12120		44.407	14.182	1	4343700	+		5284	16507	3547	3591	5153	5153					-0.07645167000850961
DEAKSNPEEC	10	Unmodified	_DEAKSNPEEC_					0	0	0		nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000157388|Q01668-4|CACNA1D	nc|ENSG00000157388|Q01668-3|CACNA1D	nc|ENSG00000157388|Q01668-3|CACNA1D	MSMS	A375_MHC_IP_R2	2	561.148193359375	2	561.22441	1120.43427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.862	1	57.612	57.112	58.112	0.75015								0	0	0	0.1524	1	21495	21495		13.042	1.5478	1				5285	6240	3548	3592	5154	5154					-0.12113176397951975
DEALIGKKF	9	Unmodified	_DEALIGKKF_					0	0	0		ENSG00000173575|ENST00000394196|CHD2;nc|ENSG00000173575|O14647-2|CHD2;nc|ENSG00000173575|O14647-3|CHD2	ENSG00000173575|ENST00000394196|CHD2	ENSG00000173575|ENST00000394196|CHD2	MULTI-SECPEP	A375_MHC_IP_R1	1	511.18963623046875	2	510.78985	1019.56515	-0.41184	-0.00021036	-0.016075	-8.2111E-06	-0.42792	-0.00021858	510.7898149406725	42.156	1.9794	42.156	41.828	43.808	0					86	38	5	0	0	0	0.022401	1	14539	14539		99.755	41.076	1	190350000			5286	7811	3549	3593	5155	5155					0.05614627103057046
DEALIGKKF	9	Unmodified	_DEALIGKKF_					0	0	0		ENSG00000173575|ENST00000394196|CHD2;nc|ENSG00000173575|O14647-2|CHD2;nc|ENSG00000173575|O14647-3|CHD2	ENSG00000173575|ENST00000394196|CHD2	ENSG00000173575|ENST00000394196|CHD2	MULTI-SECPEP	A375_MHC_IP_R2	2	510.1869201660156	2	510.78985	1019.56515	-0.92955	-0.0004748	0.11163	5.7018E-05	-0.81792	-0.00041779	510.78984699056844	41.348	1.6796	42.123	41.692	43.372	0.77451					83	32	5	0	0	0	0.04038	1	15304	15304		85.642	23.069	1	196010000			5287	7811	3549	3593	5156	5156					0.05614627103057046
DEALKLRGRSF	11	Unmodified	_DEALKLRGRSF_					0	0	0		ENST00000547581.5_1_12:48529049-48539488:+|nuORF;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;nc|ENSG00000152556|P08237-2|PFKM	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	431.9264221191406	3	431.242088	1290.70443	-0.57057	-0.00024605	-0.42121	-0.00018164	-0.99178	-0.0004277	431.57633223701794	26.661	0.35622	27.32	27.161	27.517	0.65992					10	6	2	0	0	0	0.99252	1	9028	9028		8.2864	8.2864	1	2715200			5288	5973	3550	3594	5157	5157					0.07070964720401207
DEANFINKL	9	Unmodified	_DEANFINKL_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	MSMS	A375_MHC_IP_R1	1	532.2007446289062	2	532.274564	1062.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.119	1	50.119	49.619	50.619	0								0	0	0	0.14905	1	17746	17746		23.148	2.6948	1		+		5289	21924	3551	3595	5158	5158					0.00580848718004745
DEAPVLDVRY	10	Unmodified	_DEAPVLDVRY_					0	0	0		ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	MULTI-MSMS	A375_MHC_IP_R1	1	589.1982421875	2	588.798403	1175.58225	-0.38185	-0.00022483	0.0036114	2.1264E-06	-0.37823	-0.0002227	588.7983356055266	76.597	1.0155	76.597	76.168	77.184	0					61	19	5	0	0	0	0.012014	1	27870	27870		91.085	58.299	1	58549000			5290	1939	3552	3596	5159	5159					0.0014850291820494022
DEAPVLDVRY	10	Unmodified	_DEAPVLDVRY_					0	0	0		ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	MULTI-SECPEP	A375_MHC_IP_R2	2	589.1978759765625	2	588.798403	1175.58225	-0.55347	-0.00032588	0.24871	0.00014644	-0.30476	-0.00017944	588.7985105017515	75.924	1.0691	76.665	76.282	77.352	0.74052					60	20	5	0	0	0	0.20174	1	28770	28770		64.927	38.659	1	62457000			5291	1939	3552	3596	5160	5160					0.0014850291820494022
DEAQLNKENW	10	Unmodified	_DEAQLNKENW_					0	0	0		ENSG00000159259|ENST00000314103|CHAF1B;ENST00000480486.1_1_21:37758395-37770302:+|nuORF	ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	MULTI-MSMS	A375_MHC_IP_R1	1	623.7421264648438	2	623.788566	1245.56258	-0.12816	-7.9942E-05	0.13456	8.3935E-05	0.0064012	3.993E-06	623.7886957800988	45.382	0.85937	45.382	44.98	45.839	0					27	16	3	0	0	0	0.54638	2	15751	15751;15778		24.882	11.839	1	2780700			5292	6362	3553	3597	5161;5162	5161					-0.05037873092555856
DEAQLNKENW	10	Unmodified	_DEAQLNKENW_					0	0	0		ENSG00000159259|ENST00000314103|CHAF1B;ENST00000480486.1_1_21:37758395-37770302:+|nuORF	ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	MULTI-MSMS	A375_MHC_IP_R2	2	624.6893310546875	2	623.788566	1245.56258	-0.79446	-0.00049558	0.63268	0.00039466	-0.16179	-0.00010092	623.7891902668341	44.469	0.86636	45.238	44.934	45.8	0.7691					28	16	3	0	0	0	0.60608	1	16576	16576		20.415	12.259	1	2751400			5293	6362	3553	3597	5163	5163					-0.05037873092555856
DEARDLIQRY	10	Unmodified	_DEARDLIQRY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	A375_MHC_IP_R1	1	426.639892578125	3	426.886081	1277.63641	0.35614	0.00015203	-0.51628	-0.00022039	-0.16014	-6.8363E-05	426.885879037101	49.243	0.86051	49.243	48.933	49.793	0					36	16	3	0	0	0	0.013856	1	17405	17405		110.18	83.091	1	36997000			5294	7864	3554	3598	5164	5164					0.008700950697630105
DEARDLIQRY	10	Unmodified	_DEARDLIQRY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	A375_MHC_IP_R1	1	640.2249145507812	2	639.825483	1277.63641	-0.14687	-9.3973E-05	-0.4094	-0.00026194	-0.55627	-0.00035592	639.8252262668615	49.255	0.60715	49.255	48.933	49.54	0					31	11	4	0	0	0	0.17911	1	17374	17374		68.76	49.398	1	10953000			5295	7864	3554	3598	5165	5165					0.008700950697630105
DEARDLIQRY	10	Unmodified	_DEARDLIQRY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R2	2	427.2861022949219	3	426.886081	1277.63641	-0.23022	-9.8276E-05	-0.42537	-0.00018159	-0.65559	-0.00027986	426.8859071231902	48.602	0.71175	49.36	49.08	49.792	0.75737					47	13	5	0	0	0	0.010716	2	18206	18206;18287		110.18	85.222	1	35823000			5296	7864	3554	3598	5166;5167	5166					0.008700950697630105
DEARDLIQRY	10	Unmodified	_DEARDLIQRY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R2	2	640.2247924804688	2	639.825483	1277.63641	-0.79548	-0.00050897	-0.16744	-0.00010714	-0.96292	-0.0006161	639.8253564035997	48.651	0.5601	49.408	49.13	49.69	0.75737					27	10	3	0	0	0	0.011479	1	18236	18236		135.72	97.543	1	10634000			5297	7864	3554	3598	5168	5168					0.008700950697630105
DEARNLHSKW	10	Unmodified	_DEARNLHSKW_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R1	1	419.6109313964844	3	419.210788	1254.61053	0.38992	0.00016346	-0.65331	-0.00027387	-0.26339	-0.00011041	419.2105075295541	21.572	0.35496	21.572	21.301	21.656	0					14	6	3	0	0	0	0.40453	1	5698	5698		59.177	44.772	1	3411700			5298	3298	3555	3599	5169	5169					-0.00658754381856852
DEARTLYHYLY	11	Unmodified	_DEARTLYHYLY_					0	0	0			REV__ENSG00000137473|ENST00000325106|TTC29	REV__ENSG00000137473|ENST00000325106|TTC29	MSMS	A375_MHC_IP_R2	2	722.347900390625	2	722.348791	1442.68303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.847	1	45.616	45.116	46.116	0.7691								0	0	0	0.16297	1	16749	16749		3.2813	0	1		+		5299	19008	3556	3600	5170	5170					-0.020604650989298534
DEASHKGSW	9	Unmodified	_DEASHKGSW_					0	0	0		ZBP1|p.E421K|1|0.32|ENSG00000124256|chr20:57604602-57604602|C/T|missense_variant	ZBP1|p.E421K|1|0.32|ENSG00000124256|chr20:57604602-57604602|C/T|missense_variant	ZBP1|p.E421K|1|0.32|ENSG00000124256|chr20:57604602-57604602|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	508.9313049316406	2	508.725238	1015.43592	-0.7627	-0.00038801	0.04514	2.2964E-05	-0.71756	-0.00036504	508.72505836053244	31.69	0.25476	32.427	32.249	32.504	0.73691					6	4	2	0	0	0	0.69507	1	11233	11233		13.906	5.9959	1	1100500			5300	30181	3557	3601	5171	5171					-0.07117754527030229
DEASPLSEW	9	Unmodified	_DEASPLSEW_					0	0	0		nc|ENSG00000170266|P16278-2|GLB1	nc|ENSG00000170266|P16278-2|GLB1	nc|ENSG00000170266|P16278-2|GLB1	MULTI-MSMS	A375_MHC_IP_R1	1	517.7109375	2	517.227279	1032.44001	-0.46878	-0.00024247	1.0269	0.00053112	0.55808	0.00028866	517.2278412186791	33.673	0.50425	33.673	33.547	34.052	0					13	9	2	0	0	0	0.6898	1	11011	11011		7.9102	2.1783	1	2694800			5301	14763	3558	3602	5172	5172					-0.07491709823989368
DEASPLSEW	9	Unmodified	_DEASPLSEW_					0	0	0		nc|ENSG00000170266|P16278-2|GLB1	nc|ENSG00000170266|P16278-2|GLB1	nc|ENSG00000170266|P16278-2|GLB1	MULTI-MSMS	A375_MHC_IP_R2	2	517.6266479492188	2	517.227279	1032.44001	-0.87239	-0.00045123	0.71554	0.00037009	-0.15686	-8.1131E-05	517.2276170197191	33.011	0.45869	33.748	33.569	34.028	0.73692					13	8	2	0	0	0	0.69674	1	11834	11834		7.2892	0.56607	1	2797000			5302	14763	3558	3602	5173	5173					-0.07491709823989368
DEASPLSEW	9	Unmodified	_DEASPLSEW_					0	0	0		nc|ENSG00000170266|P16278-2|GLB1	nc|ENSG00000170266|P16278-2|GLB1	nc|ENSG00000170266|P16278-2|GLB1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	517.227279	1032.44001	-0.87239	-0.00045123	0.71554	0.00037009	-0.15686	-8.1131E-05	517.2276170197191	33.011	0.45869	33.748	33.569	34.028	0.73692	0.037341	-0.00021361	NaN	7.2892	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2797000			5303	14763	3558	3602							-0.07491709823989368
DEATAEWQPEP	11	Unmodified	_DEATAEWQPEP_					0	0	0		nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	MULTI-MSMS	A375_MHC_IP_R2	2	637.1719360351562	2	636.772582	1271.53061	-0.59261	-0.00037736	-0.16039	-0.00010213	-0.753	-0.00047949	636.7725156018323	46.785	0.60937	47.546	47.309	47.919	0.76128					30	11	3	0	0	0	0.67989	2	17539	17539;17619		17.113	4.0704	1	4806100			5304	6775	3559	3603	5174;5175	5174					-0.09429285566375256
DEAVGVQKW	9	Unmodified	_DEAVGVQKW_					0	0	0		ENSG00000007202|ENST00000528896|BLTP2;nc|ENSG00000007202|Q14667-2|BLTP2	ENSG00000007202|ENST00000528896|BLTP2	ENSG00000007202|ENST00000528896|BLTP2	MULTI-SECPEP	A375_MHC_IP_R1	1	516.6611938476562	2	516.261456	1030.50836	-0.088855	-4.5872E-05	-0.096307	-4.972E-05	-0.18516	-9.5592E-05	516.2614031739398	48.775	0.70775	48.775	48.476	49.184	0					26	13	3	0	0	0	0.04395	1	17221	17221		81.89	45.763	1	5570800			5305	937	3560	3604	5176	5176					-0.005674204534898308
DEAVGVQKW	9	Unmodified	_DEAVGVQKW_					0	0	0		ENSG00000007202|ENST00000528896|BLTP2;nc|ENSG00000007202|Q14667-2|BLTP2	ENSG00000007202|ENST00000528896|BLTP2	ENSG00000007202|ENST00000528896|BLTP2	MULTI-MSMS	A375_MHC_IP_R2	2	516.660888671875	2	516.261456	1030.50836	-0.66739	-0.00034455	0.066025	3.4086E-05	-0.60137	-0.00031046	516.2614364149379	48.093	0.55404	48.855	48.48	49.034	0.76127					22	10	3	0	0	0	0.054426	1	18027	18027		62.573	38.552	1	6829500			5306	937	3560	3604	5177	5177					-0.005674204534898308
DEAVINKKL	9	Unmodified	_DEAVINKKL_					0	0	0		nc|ENSG00000108306|Q96IG2-2|FBXL20;ENSG00000108306|ENST00000264658|FBXL20	nc|ENSG00000108306|Q96IG2-2|FBXL20	nc|ENSG00000108306|Q96IG2-2|FBXL20	MULTI-MSMS	A375_MHC_IP_R1	1	515.7000732421875	2	515.300581	1028.58661	-0.73836	-0.00038048	-0.76711	-0.00039529	-1.5055	-0.00077577	515.3006203638937	27.933	0.60399	27.933	27.735	28.339	0					29	11	4	0	0	0	0.0098926	1	8552	8552		118.07	14.715	1	9835900			5307	2791	3561	3605	5178	5178					0.07346012131756652
DEAVINKKL	9	Unmodified	_DEAVINKKL_					0	0	0		nc|ENSG00000108306|Q96IG2-2|FBXL20;ENSG00000108306|ENST00000264658|FBXL20	nc|ENSG00000108306|Q96IG2-2|FBXL20	nc|ENSG00000108306|Q96IG2-2|FBXL20	MULTI-MSMS	A375_MHC_IP_R2	2	515.7002563476562	2	515.300581	1028.58661	-0.70151	-0.00036149	-0.99868	-0.00051462	-1.7002	-0.00087611	515.3005390855045	27.334	0.76315	28.013	27.638	28.401	0.67857					36	14	4	0	0	0	0.0022058	1	9311	9311		142.08	15.514	1	8760900			5308	2791	3561	3605	5179	5179					0.07346012131756652
DEAVLFVQV	9	Unmodified	_DEAVLFVQV_					0	0	0		ENSG00000184985|ENST00000507866|SORCS2	ENSG00000184985|ENST00000507866|SORCS2	ENSG00000184985|ENST00000507866|SORCS2	MULTI-SECPEP	A375_MHC_IP_R1	1	1019.1053466796875	1	1019.54079	1018.53351	0.1649	0.00016812	-0.26164	-0.00026675	-0.096747	-9.8637E-05	1019.540461618913	128.86	0.40915	128.86	128.68	129.09	0					15	7	3	0	0	0	0.46045	1	49576	49576		36.127	5.4905	1	76250000			5309	8625	3562	3606	5180	5180					0.024986343491036678
DECALMMPI	9	Unmodified	_DECALMMPI_					0	0	0			REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-SECPEP	A375_MHC_IP_R1	1	511.18463134765625	2	511.721407	1021.42826	-0.38648	-0.00019777	-1.8287	-0.0009358	-2.2152	-0.0011336	512.2239549767793	50.15	0.81854	50.15	49.743	50.561	0					19	15	2	0	0	0	0.69504	1	17722	17722		7.9102	5.6074	1	3033300	+		5310	20185	3563	3607	5181	5181					-0.08159689434830852
DECDPDPCHY	10	Unmodified	_DECDPDPCHY_					0	0	0		ENSG00000148400|ENST00000651671|NOTCH1	ENSG00000148400|ENST00000651671|NOTCH1	ENSG00000148400|ENST00000651671|NOTCH1	MSMS	A375_MHC_IP_R2	2	597.1959228515625	2	597.197338	1192.38012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.843	1	76.584	76.084	77.084	0.74052								0	0	0	0.1552	1	28790	28790		3.9444	1.8846	1				5311	5739	3564	3608	5182	5182					-0.20837091821204012
DECEDYGDPV	10	Unmodified	_DECEDYGDPV_					0	0	0		ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	MSMS	A375_MHC_IP_R1	1	381.0228271484375	3	381.137855	1140.39173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.759	1	23.759	23.259	24.259	0								0	0	0	0.15585	1	6592	6592		0.77653	0.078866	1				5312	3608	3565	3609	5183	5183					-0.1728457152619285
DECIYQKSF	9	Unmodified	_DECIYQKSF_					0	0	0		ENSG00000168672|ENST00000304916|LRATD2	ENSG00000168672|ENST00000304916|LRATD2	ENSG00000168672|ENST00000304916|LRATD2	MULTI-SECPEP	A375_MHC_IP_R1	1	567.152587890625	2	566.752607	1131.49066	-0.29817	-0.00016899	0.012161	6.8922E-06	-0.28601	-0.0001621	566.7525751271884	55.889	1.0669	55.889	55.431	56.498	0					32	20	2	0	0	0	0.30925	1	20005	20005		41.956	22.699	1	2464600			5313	7333	3566	3610	5184	5184					-0.0698250377063232
DECIYQKSF	9	Unmodified	_DECIYQKSF_					0	0	0		ENSG00000168672|ENST00000304916|LRATD2	ENSG00000168672|ENST00000304916|LRATD2	ENSG00000168672|ENST00000304916|LRATD2	MULTI-MSMS	A375_MHC_IP_R2	2	567.1522827148438	2	566.752607	1131.49066	-0.51002	-0.00028905	0.24801	0.00014056	-0.26201	-0.00014849	566.7527462941619	55.188	1.1704	55.939	55.626	56.797	0.75075					31	22	2	0	0	0	0.0092511	1	20818	20818		103.42	72.783	1	2737500			5314	7333	3566	3610	5185	5185					-0.0698250377063232
DECKSLHY	8	Unmodified	_DECKSLHY_					0	0	0		ENST00000479543.1_3_11:35283254-35308332:-|nuORF	ENST00000479543.1_3_11:35283254-35308332:-|nuORF	ENST00000479543.1_3_11:35283254-35308332:-|nuORF	MSMS	A375_MHC_IP_R2	2	497.6494445800781	2	497.718567	993.422581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.108	1	66.846	66.346	67.346	0.73811								0	0	0	0.16876	1	25057	25057		24.674	6.5389	1				5315	12477	3567	3611	5186	5186					-0.0743932863064174
DEDASRMEEVD	11	Unmodified	_DEDASRMEEVD_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	A375_MHC_IP_R1	1	648.65625	2	648.256439	1294.49832	-0.58384	-0.00037848	-0.19017	-0.00012328	-0.77401	-0.00050176	648.2564470234473	30.844	0.45531	30.844	30.603	31.059	0					18	8	3	0	0	0	0.013697	1	9843	9843		90.964	5.3228	1	4111100			5316	2057	3568	3612	5187	5187					-0.1371444103167505
DEDASRMEEVD	11	Unmodified	_DEDASRMEEVD_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	A375_MHC_IP_R2	2	648.65576171875	2	648.256439	1294.49832	-0.73474	-0.0004763	-0.14857	-9.6309E-05	-0.88331	-0.00057261	648.2564959117262	30.29	0.55806	31.009	30.759	31.317	0.71857					23	10	3	0	0	0	0.00059444	1	10619	10619		109.15	23.505	1	3830500			5317	2057	3568	3612	5188	5188					-0.1371444103167505
DEDASRMEEVD	11	Oxidation (M)	_DEDASRM(Oxidation (M))EEVD_		DEDASRM(1)EEVD		DEDASRM(59)EEVD	0	0	1		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MSMS	A375_MHC_IP_R1	1	656.396728515625	2	656.253896	1310.49324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.219	1	22.219	21.719	22.719	0								0	0	0	0.0027489	1	5941	5941		59.013	38.598	1				5318	2057	3568	3613	5189	5189		76			-0.1495874489430662
DEDASRMEEVD	11	Oxidation (M)	_DEDASRM(Oxidation (M))EEVD_		DEDASRM(1)EEVD		DEDASRM(57)EEVD	0	0	1		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	A375_MHC_IP_R2	2	656.6532592773438	2	656.253896	1310.49324	-1.2208	-0.00080113	0.074435	4.8848E-05	-1.1463	-0.00075228	656.253968229645	21.823	1.0729	22.443	22.081	23.153	0.61932					34	20	2	0	0	0	0.17512	1	6883	6883		57.204	41.955	1	1705700			5319	2057	3568	3613	5190	5190		76			-0.1495874489430662
DEDAYKKQF	9	Unmodified	_DEDAYKKQF_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000434805.1_1_1:35816564-35817152:+|nuORF;ENST00000480199.1_1_8:28157565-28157883:+|nuORF	ENSG00000122406|ENST00000370321|RPL5;ENST00000480199.1_1_8:28157565-28157883:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	MULTI-SECPEP	A375_MHC_IP_R1	1	382.2489013671875	3	381.848744	1142.5244	0.26824	0.00010243	0.21439	8.1865E-05	0.48263	0.00018429	381.84870188074177	25.476	0.56127	25.476	25.255	25.816	0					20	10	3	0	0	0	0.75519	1	7459	7459		14.405	14.405	1	5089300			5320	3779;12492	3569	3614	5191	5191					-0.04115759007231645
DEDAYKKQF	9	Unmodified	_DEDAYKKQF_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000434805.1_1_1:35816564-35817152:+|nuORF;ENST00000480199.1_1_8:28157565-28157883:+|nuORF	ENSG00000122406|ENST00000370321|RPL5;ENST00000480199.1_1_8:28157565-28157883:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	MULTI-SECPEP	A375_MHC_IP_R1	1	572.6685791015625	2	572.269478	1142.5244	-0.32364	-0.00018521	-1.2789	-0.00073189	-1.6026	-0.0009171	572.2686157948463	25.513	0.86355	25.513	25.204	26.068	0					23	9	3	0	0	0	0.011465	1	7432	7432		125.53	69.352	1	13553000			5321	3779;12492	3569	3614	5192	5192					-0.04115759007231645
DEDAYKKQF	9	Unmodified	_DEDAYKKQF_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000434805.1_1_1:35816564-35817152:+|nuORF;ENST00000480199.1_1_8:28157565-28157883:+|nuORF	ENSG00000122406|ENST00000370321|RPL5;ENST00000480199.1_1_8:28157565-28157883:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	MULTI-SECPEP	A375_MHC_IP_R2	2	382.2486267089844	3	381.848744	1142.5244	-0.48593	-0.00018555	0.43338	0.00016549	-0.052547	-2.0065E-05	381.8488193690785	24.995	0.40746	25.639	25.414	25.822	0.64368					16	7	3	0	0	0	0.40377	1	8311	8311		34.932	28.726	1	5681800			5322	3779;12492	3569	3614	5193	5193					-0.04115759007231645
DEDAYKKQF	9	Unmodified	_DEDAYKKQF_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000434805.1_1_1:35816564-35817152:+|nuORF;ENST00000480199.1_1_8:28157565-28157883:+|nuORF	ENSG00000122406|ENST00000370321|RPL5;ENST00000480199.1_1_8:28157565-28157883:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	MULTI-SECPEP	A375_MHC_IP_R2	2	572.6687622070312	2	572.269478	1142.5244	-0.68693	-0.00039311	-1.306	-0.00074739	-1.9929	-0.0011405	572.2685743061393	24.996	0.6634	25.639	25.364	26.028	0.64368					22	12	3	0	0	0	0.011465	1	8304	8304		137.42	87.87	1	11659000			5323	3779;12492	3569	3614	5194	5194					-0.04115759007231645
DEDDDDDEL	9	Unmodified	_DEDDDDDEL_					0	0	0			REV__nc|ENSG00000145833|Q7L014|DDX46	REV__nc|ENSG00000145833|Q7L014|DDX46	MSMS	A375_MHC_IP_R2	2	540.6358032226562	2	540.678013	1079.34147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.746	1	73.482	72.982	73.982	0.73541								0	0	0	0.15486	1	27611	27611		4.756	2.1785	1		+		5324	19496	3570	3615	5195	5195					-0.19502402650368822
DEDDDKDEISS	11	Unmodified	_DEDDDKDEISS_					0	0	0		ENST00000508756.2_1_5:98204705-98207835:-|nuORF	ENST00000508756.2_1_5:98204705-98207835:-|nuORF	ENST00000508756.2_1_5:98204705-98207835:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	633.716796875	2	634.244051	1266.47355	-0.57021	-0.00036165	1.255	0.00079596	0.68476	0.00043431	634.2450657402962	56.032	0.65979	56.032	55.635	56.295	0					20	9	3	0	0	0	0.73135	1	19965	19965		7.609	1.8771	1	2457500			5325	12883	3571	3616	5196	5196					-0.14902797633408227
DEDDSEYEDC	10	Unmodified	_DEDDSEYEDC_					0	0	0		ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	MSMS	A375_MHC_IP_R1	1	610.1570434570312	2	610.182605	1218.35066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.726	1	55.726	55.226	56.226	0								0	0	0	0.15591	1	19940	19940		1.6526	1.0511	1				5326	1170	3572	3617	5197	5197					-0.2497837735631947
DEDDSEYEDC	10	Unmodified	_DEDDSEYEDC_					0	0	0		ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	MSMS	A375_MHC_IP_R2	2	610.1565551757812	2	610.182605	1218.35066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.105	1	55.856	55.356	56.356	0.75075								0	0	0	0.15591	1	20811	20811		1.6526	1.0511	1				5327	1170	3572	3617	5198	5198					-0.2497837735631947
DEDDSGDDTF	10	Unmodified	_DEDDSGDDTF_					0	0	0		nc|ENSG00000152592|Q13316-2|DMP1;ENSG00000152592|ENST00000339673|DMP1	nc|ENSG00000152592|Q13316-2|DMP1	nc|ENSG00000152592|Q13316-2|DMP1	MSMS	A375_MHC_IP_R1	1	558.1490478515625	2	558.186005	1114.35746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.067	1	88.067	87.567	88.567	0								0	0	0	0.1552	1	32324	32324		3.9444	0.94915	1				5328	5975	3573	3618	5199	5199					-0.1951469641346648
DEDEDEEC	8	Unmodified	_DEDEDEEC_					0	0	0		ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-2|RPAP1	ENSG00000103932|ENST00000304330|RPAP1	ENSG00000103932|ENST00000304330|RPAP1	MSMS	A375_MHC_IP_R1	1	492.1959228515625	2	492.142752	982.270951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.44	1	52.44	51.94	52.94	0								0	0	0	0.16876	1	18649	18649		0.79363	0	1				5329	2474	3574	3619	5200	5200					-0.22089399239666818
DEDEDMLSY	9	Unmodified	_DEDEDMLSY_					0	0	0		ENSG00000168757|ENST00000320701|TSPY2;nc|ENSG00000258992|Q01534-2|TSPY1;ENSG00000258992|ENST00000451548|TSPY1;ENSG00000236424|ENST00000428845|TSPY10;ENSG00000229549|ENST00000287721|TSPY8;ENSG00000228927|ENST00000457222|TSPY3;ENSG00000238074|ENST00000440215|TSPY9;ENSG00000233803|ENST00000426950|TSPY4	ENSG00000168757|ENST00000320701|TSPY2	ENSG00000168757|ENST00000320701|TSPY2	MULTI-MSMS	A375_MHC_IP_R2	2	559.1510620117188	2	558.705519	1115.39649	-0.71932	-0.00040189	1.5707	0.00087759	0.85143	0.0004757	558.7062616042283	31.958	0.35302	32.695	32.504	32.857	0.73691					10	6	2	0	0	0	0.68216	1	11352	11352		8.5933	2.3875	1	1287200			5330	7338	3575	3620	5201	5201					-0.15659687383435994
DEDEDMLSY	9	Unmodified	_DEDEDMLSY_					0	0	0		ENSG00000168757|ENST00000320701|TSPY2;nc|ENSG00000258992|Q01534-2|TSPY1;ENSG00000258992|ENST00000451548|TSPY1;ENSG00000236424|ENST00000428845|TSPY10;ENSG00000229549|ENST00000287721|TSPY8;ENSG00000228927|ENST00000457222|TSPY3;ENSG00000238074|ENST00000440215|TSPY9;ENSG00000233803|ENST00000426950|TSPY4	ENSG00000168757|ENST00000320701|TSPY2	ENSG00000168757|ENST00000320701|TSPY2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	558.705519	1115.39649	-0.75705	-0.00042297	2.012	0.0011241	1.2549	0.00070115	558.7064469567778	32.612	0.35179	32.612	32.434	32.785	0	-0.041474	0.00038324	NaN	8.5933	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1224500			5331	7338	3575	3620							-0.15659687383435994
DEDEEMPED	9	Unmodified	_DEDEEMPED_					0	0	0		ENST00000497453.1_1_1:154524878-154531400:-|nuORF;nc|ENSG00000160714|Q7Z7E8-2|UBE2Q1;ENSG00000160714|ENST00000292211|UBE2Q1	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	MSMS	A375_MHC_IP_R1	1	370.15679931640625	3	370.125615	1107.35501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.88	1	114.88	114.38	115.38	0								0	0	0	0.15486	1	42126	42126		0.23584	0	1				5332	6437	3576	3621	5202	5202					-0.19436868142747699
DEDEFDSDFY	10	Unmodified	_DEDEFDSDFY_					0	0	0			REV__EAPP|p.S111F|1|0.44|ENSG00000129518|chr14:34533464-34533464|G/A|missense_variant	REV__EAPP|p.S111F|1|0.44|ENSG00000129518|chr14:34533464-34533464|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	640.9947509765625	2	641.22513	1280.43571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.39	1	109.14	108.64	109.64	0.75436								0	0	0	0.15585	1	40927	40927		1.8442	0.19162	1		+		5333	16054	3577	3622	5203	5203					-0.19329263828194598
DEDGEDEESDH	11	Unmodified	_DEDGEDEESDH_					0	0	0			REV__ENSG00000165105|ENST00000376447|RASEF	REV__ENSG00000165105|ENST00000376447|RASEF	MSMS	A375_MHC_IP_R1	1	638.7078247070312	2	638.707833	1275.40111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.21	1	123.21	122.71	123.71	0								0	0	0	0.16297	1	46011	46011		3.2813	1.6287	1		+		5334	20547	3578	3623	5204	5204					-0.22557131706980726
DEDGEDEESDH	11	Unmodified	_DEDGEDEESDH_					0	0	0			REV__ENSG00000165105|ENST00000376447|RASEF	REV__ENSG00000165105|ENST00000376447|RASEF	MSMS	A375_MHC_IP_R2	2	638.6774291992188	2	638.707833	1275.40111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.65	1	122.09	121.59	122.59	0.44488								0	0	0	0.16334	1	46555	46555		1.3295	0	1		+		5335	20547	3578	3623	5205	5205					-0.22557131706980726
DEDGSDEH	8	Unmodified	_DEDGSDEH_					0	0	0			REV__ENSG00000196591|ENST00000519065|HDAC2	REV__ENSG00000196591|ENST00000519065|HDAC2	MULTI-SECPEP	A375_MHC_IP_R1	1	903.8790893554688	1	903.29626	902.288984	0.12776	0.00011541	-0.85889	-0.00077583	-0.73113	-0.00066043	903.2995079822794	116.84	1.9813	116.84	115.43	117.41	0					106	38	5	0	0	0	0.972	1	42361	42361		0.79363	0.10326	1	27902000	+		5336	22212	3579	3624	5206	5206					-0.16606896202654298
DEDKDYLQY	9	Unmodified	_DEDKDYLQY_					0	0	0			REV__nc|ENSG00000198961|O43164-2|PJA2	REV__nc|ENSG00000198961|O43164-2|PJA2	MULTI-SECPEP	A375_MHC_IP_R1	1	595.1559448242188	2	594.756401	1187.49825	-0.057452	-3.417E-05	0.079078	4.7032E-05	0.021625	1.2862E-05	594.7563499679399	44.487	1.2245	44.487	44.01	45.234	0					48	23	3	0	0	0	0.56537	1	15474	15474		29.082	3.6823	1	3369000	+		5337	22458	3580	3625	5207	5207					-0.08800072969370376
DEDKIDYVI	9	Unmodified	_DEDKIDYVI_					0	0	0			REV__tr|U7SNS3|U7SNS3_FUSNUVOCdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01928PE=4SV=1	REV__tr|U7SNS3|U7SNS3_FUSNUVOCdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01928PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	371.312255859375	3	370.516883	1108.52882	0.0018548	6.8725E-07	1.0205	0.00037811	1.0223	0.00037879	370.51723673471326	36.567	0.25597	36.567	36.439	36.695	0					6	4	2	0	0	0	0.81275	1	12225	12225		0.20686	0.20686	1	859460	+		5338	28339	3581	3626	5208	5208					-0.021102945843267662
DEDKPGANYY	10	Unmodified	_DEDKPGANYY_					0	0	0			REV__nc|ENSG00000284194|O43819|SCO2	REV__nc|ENSG00000284194|O43819|SCO2	MULTI-MSMS	A375_MHC_IP_R1	1	587.1928100585938	2	586.248743	1170.48293	-0.32677	-0.00019157	-0.22593	-0.00013245	-0.55269	-0.00032402	586.2485259003615	77.04	1.0179	77.04	76.673	77.69	0					51	19	4	0	0	0	0.70496	1	28244	28244		10.074	1.9184	1	9432600	+		5339	27549	3582	3627	5209	5209					-0.09548939766546027
DEDKTSVHF	9	Unmodified	_DEDKTSVHF_					0	0	0		nc|ENSG00000196557|O95180-2|CACNA1H;ENSG00000196557|ENST00000348261|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	MULTI-MSMS	A375_MHC_IP_R2	2	539.6464233398438	2	539.246003	1076.47745	-0.92401	-0.00049827	0.91698	0.00049448	-0.0070238	-3.7875E-06	539.2463323486731	66.905	1.3242	67.642	66.932	68.256	0.73631					45	25	2	0	0	0	0.69674	1	25376	25376		7.2892	0.56607	1	1331900			5340	9057	3583	3628	5210	5210					-0.057726185583760525
DEDLFRGRHY	10	Unmodified	_DEDLFRGRHY_					0	0	0		ENST00000484783.1_1_20:44472824-44485954:-|nuORF;ENSG00000101473|ENST00000217455|ACOT8	ENST00000484783.1_1_20:44472824-44485954:-|nuORF	ENST00000484783.1_1_20:44472824-44485954:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	436.9423522949219	3	436.542426	1306.60545	-0.12139	-5.2993E-05	0.2764	0.00012066	0.155	6.7666E-05	436.5421437814163	33.878	0.40465	33.878	33.698	34.103	0					18	7	4	0	0	0	0.45806	1	11145	11145		30.703	18.529	1	2619600			5341	2303	3584	3629	5211	5211					-0.035590582444683605
DEDLFRGRHY	10	Unmodified	_DEDLFRGRHY_					0	0	0		ENST00000484783.1_1_20:44472824-44485954:-|nuORF;ENSG00000101473|ENST00000217455|ACOT8	ENST00000484783.1_1_20:44472824-44485954:-|nuORF	ENST00000484783.1_1_20:44472824-44485954:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	436.542426	1306.60545	-0.48967	-0.00021376	0.1264	5.5178E-05	-0.36328	-0.00015859	436.877325592059	33.167	0.45863	33.92	33.737	34.196	0.75225	0.020982	-0.00010626	NaN	30.703	20	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2017800			5342	2303	3584	3629							-0.035590582444683605
DEDNDSDEAF	10	Unmodified	_DEDNDSDEAF_					0	0	0		ENSG00000164190|ENST00000282516|NIPBL;nc|ENSG00000164190|Q6KC79-2|NIPBL;ENST00000504430.5_1_5:36961623-36995905:+|nuORF;nc|ENSG00000164190|Q6KC79-3|NIPBL	ENSG00000164190|ENST00000282516|NIPBL	ENSG00000164190|ENST00000282516|NIPBL	MSMS	A375_MHC_IP_R2	2	578.6054077148438	2	578.69928	1155.38401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.559	1	95.304	94.804	95.804	0.74474								0	0	0	0.1552	1	35933	35933		3.9444	1.0552	1				5343	6800	3585	3630	5212	5212					-0.18747007522142667
DEDPENKIEF	10	Unmodified	_DEDPENKIEF_					0	0	0		ENSG00000113141|ENST00000417647|IK;ENST00000434096.1_1_2:58688403-58689123:-|nuORF	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-MSMS	A375_MHC_IP_R1	1	618.6744384765625	2	618.274958	1234.53536	-0.32603	-0.00020157	-0.39046	-0.00024141	-0.71648	-0.00044298	618.2746298965698	61.915	0.76585	61.915	61.483	62.249	0					31	13	3	0	0	0	0.0014869	1	22326	22326		143.21	110.43	1	10963000			5344	3127	3586	3631	5213	5213					-0.07252401423625088
DEDPENKIEF	10	Unmodified	_DEDPENKIEF_					0	0	0		ENSG00000113141|ENST00000417647|IK;ENST00000434096.1_1_2:58688403-58689123:-|nuORF	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-MSMS	A375_MHC_IP_R2	2	618.67431640625	2	618.274958	1234.53536	-0.99244	-0.0006136	0.38422	0.00023755	-0.60823	-0.00037605	618.2750980256704	61.273	0.75518	62.018	61.718	62.473	0.74503					42	14	4	0	0	0	3.1693E-05	1	23193	23193		182.24	148.13	1	13021000			5345	3127	3586	3631	5214	5214					-0.07252401423625088
DEDPTGNKALW	11	Unmodified	_DEDPTGNKALW_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	A375_MHC_IP_R1	1	623.69091796875	2	623.290942	1244.56733	-0.40622	-0.00025319	-0.099068	-6.1748E-05	-0.50529	-0.00031494	623.2908171611363	62.267	0.7694	62.267	61.839	62.609	0					24	14	3	0	0	0	0.056695	1	22515	22515		78.06	50.432	1	3615100			5346	8958	3587	3632	5215	5215					-0.045169889497856275
DEDPTGNKALW	11	Unmodified	_DEDPTGNKALW_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	A375_MHC_IP_R2	2	623.6904907226562	2	623.290942	1244.56733	-1.079	-0.00067251	-0.041592	-2.5924E-05	-1.1206	-0.00069844	623.2909665931106	61.565	0.60398	62.31	62.02	62.624	0.74503					21	11	3	0	0	0	0.020352	1	23351	23351		87.258	58.177	1	3424800			5347	8958	3587	3632	5216	5216					-0.045169889497856275
DEDRFSYT	8	Unmodified	_DEDRFSYT_					0	0	0			REV__ZNRF4|p.S375F|1|0.28|ENSG00000105428|chr19:5456615-5456615|C/T|missense_variant	REV__ZNRF4|p.S375F|1|0.28|ENSG00000105428|chr19:5456615-5456615|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	517.11669921875	2	516.717079	1031.4196	-0.74202	-0.00038342	-0.19644	-0.00010151	-0.93847	-0.00048492	516.7169225765043	86.269	0.80975	86.269	85.921	86.73	0					36	15	4	0	0	0	0.972	1	31592	31592		7.2892	0.56607	1	22103000	+		5348	17383	3588	3633	5217	5217					-0.09484880483796587
DEDRMQVYR	9	Unmodified	_DEDRMQVYR_					0	0	0		ENST00000421312.5_1_7:56099714-56119136:-|nuORF	ENST00000421312.5_1_7:56099714-56119136:-|nuORF	ENST00000421312.5_1_7:56099714-56119136:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	405.2806396484375	3	404.520633	1210.54007	-0.30686	-0.00012413	0.60123	0.00024321	0.29438	0.00011908	404.52077493514673	60.095	0.81334	60.842	60.553	61.366	0.74714					36	15	3	0	0	0	0.775	1	22809	22809		7.1017	7.1017	1	4138800			5349	11736	3589	3634	5218	5218					-0.05677795761835114
DEDRTEKCV	9	Unmodified	_DEDRTEKCV_					0	0	0			REV__tr|U7T652|U7T652_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00108PE=4SV=1	REV__tr|U7T652|U7T652_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00108PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	547.6793212890625	2	547.74277	1093.47099	-0.95038	-0.00052057	0.90446	0.00049541	-0.045924	-2.5155E-05	547.7430989467257	65.539	1.4789	66.277	65.968	67.446	0.73812					42	28	2	0	0	0	0.60012	1	25227	25227		12.532	4.6214	1	1260100	+		5350	28854	3590	3635	5219	5219					-0.07200879781407821
DEDSHSSAGTL	11	Unmodified	_DEDSHSSAGTL_					0	0	0		ENSG00000099991|ENST00000263119|CABIN1;nc|ENSG00000099991|Q9Y6J0-2|CABIN1	ENSG00000099991|ENST00000263119|CABIN1	ENSG00000099991|ENST00000263119|CABIN1	MSMS	A375_MHC_IP_R1	1	559.6461791992188	2	559.733457	1117.45236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.875	1	91.875	91.375	92.375	0								0	0	0	0.16179	1	33759	33759		9.3831	0.035688	1				5351	2097	3591	3636	5220	5220					-0.10166718151594978
DEDSPVLIQDQ	11	Unmodified	_DEDSPVLIQDQ_					0	0	0		ENST00000456064.1_1_20:10594086-10594842:-|nuORF	ENST00000456064.1_1_20:10594086-10594842:-|nuORF	ENST00000456064.1_1_20:10594086-10594842:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	629.750244140625	2	629.793514	1257.57248	-0.89414	-0.00056312	0.1019	6.4175E-05	-0.79224	-0.00049895	629.7934908416253	134.63	0.35403	134.63	134.47	134.83	0					14	6	3	0	0	0	0.51633	1	51910	51910		29.841	12.728	1	6735500			5352	12124	3592	3637	5221	5221					-0.046007298778249606
DEDSPVLIQDQ	11	Unmodified	_DEDSPVLIQDQ_					0	0	0		ENST00000456064.1_1_20:10594086-10594842:-|nuORF	ENST00000456064.1_1_20:10594086-10594842:-|nuORF	ENST00000456064.1_1_20:10594086-10594842:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	630.193115234375	2	629.793514	1257.57248	-0.70606	-0.00044467	0.46773	0.00029458	-0.23832	-0.00015009	629.7938234753695	134.58	0.45642	134.72	134.44	134.9	0.13901					15	8	3	0	0	0	0.88813	1	52938	52938		24.991	11.948	1	6322700			5353	12124	3592	3637	5222	5222					-0.046007298778249606
DEDSSRPVW	9	Unmodified	_DEDSSRPVW_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	A375_MHC_IP_R1	1	545.1538696289062	2	545.743628	1089.4727	-0.49949	-0.00027259	0.57029	0.00031123	0.070801	3.8639E-05	545.7436413966235	47.469	0.66148	47.469	47.107	47.768	0					23	12	3	0	0	0	0.16764	1	16646	16646		51.63	26.23	1	2729900			5354	7431	3593	3638	5223	5223					-0.06845502701116857
DEDSSRPVW	9	Unmodified	_DEDSSRPVW_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	A375_MHC_IP_R2	2	546.1430053710938	2	545.743628	1089.4727	-0.62233	-0.00033963	0.075031	4.0947E-05	-0.5473	-0.00029869	545.7437288430077	46.776	0.61073	47.538	47.206	47.817	0.76128					21	11	2	0	0	0	0.22013	1	17542	17542		36.506	22.6	1	2676400			5355	7431	3593	3638	5224	5224					-0.06845502701116857
DEDSTCSSSSD	11	Unmodified	_DEDSTCSSSSD_					0	0	0		nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	MSMS	A375_MHC_IP_R2	2	378.4055480957031	3	378.124274	1131.35099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.976	1	12.52	12.02	13.02	0.54443								0	0	0	0.1636	1	3709	3709		0	0	1				5356	3143	3594	3639	5225	5225					-0.20942957636452775
DEDTGTFRIY	10	Unmodified	_DEDTGTFRIY_					0	0	0		nc|ENSG00000114416|P51114-3|FXR1;nc|ENSG00000114416|P51114-2|FXR1;ENSG00000114416|ENST00000357559|FXR1;ENST00000473375.1_1_3:180669142-180671642:+|nuORF	nc|ENSG00000114416|P51114-3|FXR1	nc|ENSG00000114416|P51114-3|FXR1	MULTI-SECPEP	A375_MHC_IP_R1	1	609.177490234375	2	608.777667	1215.54078	-0.33389	-0.00020326	0.092883	5.6545E-05	-0.241	-0.00014672	608.7778123275566	73.689	0.45641	73.689	73.386	73.843	0					17	8	3	0	0	0	0.37062	1	26814	26814		69.338	41.709	1	2099100			5357	3219	3595	3640	5226	5226					-0.05836677841125493
DEDTGTFRIY	10	Unmodified	_DEDTGTFRIY_					0	0	0		nc|ENSG00000114416|P51114-3|FXR1;nc|ENSG00000114416|P51114-2|FXR1;ENSG00000114416|ENST00000357559|FXR1;ENST00000473375.1_1_3:180669142-180671642:+|nuORF	nc|ENSG00000114416|P51114-3|FXR1	nc|ENSG00000114416|P51114-3|FXR1	MULTI-SECPEP	A375_MHC_IP_R2	2	609.177734375	2	608.777667	1215.54078	-0.45129	-0.00027473	0.0031073	1.8917E-06	-0.44818	-0.00027284	608.7773750992643	73.075	0.56118	73.81	73.48	74.041	0.73541					14	10	2	0	0	0	0.098731	1	27731	27731		93.938	59.536	1	2583200			5358	3219	3595	3640	5227	5227					-0.05836677841125493
DEDTPKFFF	9	Unmodified	_DEDTPKFFF_					0	0	0			REV__ENST00000328381.9_2_17:29297643-29297919:+|nuORF	REV__ENST00000328381.9_2_17:29297643-29297919:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1145.60107421875	1	1145.51497	1144.50769	0.26613	0.00030485	-1.6296	-0.0018667	-1.3635	-0.0015619	1145.5126230992491	111.8	0.55971	111.8	111.52	112.08	0					17	10	2	0	0	0	0.69674	1	40976	40976		7.2892	1.0834	1	4893000	+		5359	23608	3596	3641	5228	5228					-0.05878259893165705
DEDTPKFFF	9	Unmodified	_DEDTPKFFF_					0	0	0			REV__ENST00000328381.9_2_17:29297643-29297919:+|nuORF	REV__ENST00000328381.9_2_17:29297643-29297919:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	1145.51497	1144.50769	0.26613	0.00030485	-1.6296	-0.0018667	-1.3635	-0.0015619	1145.5126230992491	111.8	0.55971	111.8	111.52	112.08	0	-0.071727	-6.6099E-05	NaN	7.2892	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4893000	+		5360	23608	3596	3641							-0.05878259893165705
DEDTSEFKFT	10	Unmodified	_DEDTSEFKFT_					0	0	0			REV__nc|ENSG00000111785|Q9NVN3|RIC8B	REV__nc|ENSG00000111785|Q9NVN3|RIC8B	MULTI-SECPEP	A375_MHC_IP_R2	2	610.1608276367188	2	609.761683	1217.50881	-0.38228	-0.0002331	-1.1159	-0.00068042	-1.4982	-0.00091352	609.7612009452125	69.605	0.61087	70.339	70.031	70.642	0.73421					17	11	2	0	0	0	0.74754	1	26392	26392		29.082	2.1979	1	3290900	+		5361	17693	3597	3642	5229	5229					-0.09124090314958266
DEDVGRVIF	9	Unmodified	_DEDVGRVIF_					0	0	0		ENST00000561048.1_1_15:64452264-64455191:-|nuORF;ENSG00000166794|ENST00000300026|PPIB	ENST00000561048.1_1_15:64452264-64455191:-|nuORF	ENST00000561048.1_1_15:64452264-64455191:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	525.7029418945312	2	525.266739	1048.51892	-0.38134	-0.00020031	-0.13479	-7.0799E-05	-0.51613	-0.00027111	525.26672590778	79.353	0.30312	80.098	79.896	80.199	0.74474					9	5	2	0	0	0	0.49205	1	30073	30073		27.629	5.8822	1	1859800			5362	7111	3598	3643	5230	5230					-0.00339437799038933
DEDVTSKAF	9	Unmodified	_DEDVTSKAF_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	A375_MHC_IP_R1	1	506.6658935546875	2	506.235104	1010.45566	-0.31326	-0.00015858	0.10708	5.4208E-05	-0.20618	-0.00010437	506.23512525655707	38.601	0.71468	38.601	38.268	38.983	0					36	13	4	0	0	0	0.0061124	1	13146	13146		133.05	84.706	1	32304000			5363	7877	3599	3644	5231	5231					-0.04915423306943012
DEDVTSKAF	9	Unmodified	_DEDVTSKAF_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	A375_MHC_IP_R2	2	506.66595458984375	2	506.235104	1010.45566	-0.92408	-0.0004678	0.22122	0.00011199	-0.70286	-0.00035581	506.23519854638056	37.871	0.86861	38.646	38.382	39.25	0.77451					40	16	4	0	0	0	0.0061124	1	13916	13916		133.05	84.706	1	33366000			5364	7877	3599	3644	5232	5232					-0.04915423306943012
DEDVWITKRQE	11	Unmodified	_DEDVWITKRQE_					0	0	0			REV__ENSG00000198286|ENST00000396946|CARD11	REV__ENSG00000198286|ENST00000396946|CARD11	MSMS	A375_MHC_IP_R1	1	709.9644775390625	2	709.849155	1417.68376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110	1	110	109.5	110.5	0								0	0	0	0.16213	1	40339	40339		7.609	2.3121	1		+		5365	22359	3600	3645	5233	5233					-0.008376704498914478
DEEDEDSDF	9	Unmodified	_DEEDEDSDF_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MSMS	A375_MHC_IP_R2	2	550.6170043945312	2	550.680556	1099.34656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.98	1	103.74	103.24	104.24	0.76428								0	0	0	0.15486	1	39007	39007		2.0598	0	1				5366	3637	3601	3646	5234	5234					-0.1991409878773993
DEEDEENHY	9	Unmodified	_DEEDEENHY_					0	0	0			REV__ENSG00000148411|ENST00000277554|NACC2	REV__ENSG00000148411|ENST00000277554|NACC2	MSMS	A375_MHC_IP_R1	1	590.1612548828125	2	590.207272	1178.39999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.706	1	76.706	76.206	77.206	0								0	0	0	0.15486	1	27965	27965		7.9102	3.1541	1		+		5367	19631	3602	3647	5235	5235					-0.18207301285224275
DEEDERDCPEN	11	Unmodified	_DEEDERDCPEN_					0	0	0		ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	MULTI-MSMS	A375_MHC_IP_R2	2	675.8272705078125	2	675.741153	1349.46775	-0.68266	-0.0004613	1.8727	0.0012655	1.1901	0.00080417	676.2427807507772	108.24	0.25599	108.99	108.81	109.07	0.75436					5	4	2	0	0	0	0.7362	1	40874	40874		2.9952	0	1	1782300			5368	7335	3603	3648	5236	5236					-0.19300219416709297
DEEDLFEDY	9	Unmodified	_DEEDLFEDY_					0	0	0			REV__nc|ENSG00000121446|A5PLK6-5|RGSL1	REV__nc|ENSG00000121446|A5PLK6-5|RGSL1	MULTI-MSMS	A375_MHC_IP_R2	2	587.7268676757812	2	587.724766	1173.43498	-0.49	-0.00028798	-2.4467	-0.001438	-2.9367	-0.001726	587.7229791842486	89.08	0.75439	89.812	89.381	90.135	0.7318					25	14	2	0	0	0	0.51106	1	33856	33856		19.257	7.6167	1	2654900	+		5369	18161	3604	3649	5237	5237					-0.14480058477261082
DEEDLFEDY	9	Unmodified	_DEEDLFEDY_					0	0	0			REV__nc|ENSG00000121446|A5PLK6-5|RGSL1	REV__nc|ENSG00000121446|A5PLK6-5|RGSL1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	587.724766	1173.43498	-0.49	-0.00028798	-2.4467	-0.001438	-2.9367	-0.001726	587.7229791842486	89.08	0.75439	89.812	89.381	90.135	0.7318	0.11555	5.5662E-05	NaN	19.257	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2654900	+		5370	18161	3604	3649							-0.14480058477261082
DEEDQFSY	8	Unmodified	_DEEDQFSY_					0	0	0			REV__ENST00000513705.5_1_4:5205889-5347127:+|nuORF	REV__ENST00000513705.5_1_4:5205889-5347127:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	517.11669921875	2	516.693269	1031.37199	-0.74327	-0.00038404	0.10114	5.2258E-05	-0.64213	-0.00033178	517.1947534100175	86.344	0.40517	86.344	86.072	86.477	0					11	7	2	0	0	0	0.972	1	31592	31592		9.3474	0	1	1332800	+		5371	15758	3605	3650	5238	5238					-0.14244579474643615
DEEDRYQIPGE	11	Unmodified	_DEEDRYQIPGE_					0	0	0			REV__ENST00000493669.2_1_1:28733953-28817463:+|nuORF	REV__ENST00000493669.2_1_1:28733953-28817463:+|nuORF	MSMS	A375_MHC_IP_R2	2	675.6387939453125	2	675.794046	1349.57354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.18	1	112.9	112.4	113.4	0.72458								0	0	0	0.16302	1	42292	42292		2.9952	0	1		+		5372	22490	3606	3651	5239	5239					-0.08726515508919874
DEEEAGRRGE	10	Unmodified	_DEEEAGRRGE_					0	0	0			REV__ENSG00000109265|ENST00000682029|CRACD	REV__ENSG00000109265|ENST00000682029|CRACD	MULTI-SECPEP	A375_MHC_IP_R2	2	573.9971313476562	2	574.252348	1146.49014	-0.48284	-0.00027727	0.92245	0.00052972	0.43961	0.00025245	574.2527650565453	41.164	0.40666	41.938	41.641	42.047	0.77451					10	7	2	0	0	0	0.85226	1	15232	15232		14.838	14.838	1	1661900	+		5373	17576	3607	3652	5240	5240					-0.07724207166120323
DEEEDDDENDG	11	Unmodified	_DEEEDDDENDG_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MSMS	A375_MHC_IP_R2	2	427.7025451660156	3	427.800624	1280.38004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.471	1	63.214	62.714	63.714	0.74263								0	0	0	0.16351	1	23679	23679		0.45452	0	1				5374	1199	3608	3653	5241	5241					-0.24893141806524
DEEEEEESCSL	11	Unmodified	_DEEEEEESCSL_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MSMS	A375_MHC_IP_R1	1	649.9014282226562	2	649.732462	1297.45037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.873	1	79.873	79.373	80.373	0								0	0	0	0.16297	1	29157	29157		3.2813	0	1				5375	7640	3609	3654	5242	5242					-0.18645559742390105
DEEEEEKQNL	10	Unmodified	_DEEEEEKQNL_					0	0	0			REV__HRC|p.E533K|1|0.46|ENSG00000130528|chr19:49153641-49153641|C/T|missense_variant	REV__HRC|p.E533K|1|0.46|ENSG00000130528|chr19:49153641-49153641|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	632.0377807617188	2	631.772779	1261.53101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.453	1	59.453	58.953	59.953	0								0	0	0	0.15332	1	21386	21386		10.074	0.6908	1		+		5376	26756	3610	3655	5243	5243					-0.08929910637175453
DEEEEQGP	8	Unmodified	_DEEEEQGP_					0	0	0			REV__ENSG00000188483|ENST00000372491|IER5L	REV__ENSG00000188483|ENST00000372491|IER5L	MULTI-SECPEP	A375_MHC_IP_R1	1	932.6565551757812	1	932.347962	931.340685	0.20731	0.00019329	-3.4318	-0.0031996	-3.2244	-0.0030063	932.3457251005547	108.93	0.25194	108.93	108.81	109.07	0					6	4	2	0	0	0	0.972	1	39953	39953		5.7604	1.0044	1	1107900	+		5377	22092	3611	3656	5244	5244					-0.12773152508748353
DEEETLLH	8	Unmodified	_DEEETLLH_					0	0	0			REV__ENSG00000070371|ENST00000427926|CLTCL1	REV__ENSG00000070371|ENST00000427926|CLTCL1	MULTI-SECPEP	A375_MHC_IP_R2	2	492.4508972167969	2	493.227279	984.440005	-0.53168	-0.00026224	1.2618	0.00062237	0.73015	0.00036013	493.22764465448114	30.792	0.40259	31.51	31.367	31.77	0.71857					10	7	2	0	0	0	0.96296	1	10793	10793		15.768	13.708	1	1103500	+		5378	16574	3612	3657	5245	5245					-0.052837098239933766
DEEETYRLW	9	Unmodified	_DEEETYRLW_					0	0	0		ENSG00000099817|ENST00000615234|POLR2E;ENST00000592597.1_1_19:1093873-1095344:-|nuORF;ENST00000586817.5_1_19:1095212-1095344:-|nuORF	ENSG00000099817|ENST00000615234|POLR2E	ENSG00000099817|ENST00000615234|POLR2E	MULTI-SECPEP	A375_MHC_IP_R2	2	621.478759765625	2	620.777667	1239.54078	-0.60568	-0.00037599	0.47532	0.00029507	-0.13036	-8.0922E-05	620.7774381483498	84.7	0.60727	85.436	85.018	85.626	0.73602					16	11	2	0	0	0	0.31606	1	32135	32135		47.749	31.6	1	1618800			5379	2086	3613	3658	5246	5246					-0.06940677841157594
DEEEWENTEAV	11	Unmodified	_DEEEWENTEAV_					0	0	0		ENSG00000198883|ENST00000535214|PNMA5	ENSG00000198883|ENST00000535214|PNMA5	ENSG00000198883|ENST00000535214|PNMA5	MULTI-SECPEP	A375_MHC_IP_R2	2	676.5147705078125	2	675.770236	1349.52592	-0.58025	-0.00039211	0.74602	0.00050414	0.16578	0.00011203	675.7703285921064	68.534	0.45595	69.27	69.018	69.474	0.73511					11	8	2	0	0	0	0.99606	1	26006	26006		6.2058	1.8765	1	1363100			5380	9359	3614	3659	5247	5247					-0.13486214499812377
DEEGRALLHW	10	Unmodified	_DEEGRALLHW_					0	0	0		ENSG00000230124|ENST00000367595|ACBD6	ENSG00000230124|ENST00000367595|ACBD6	ENSG00000230124|ENST00000367595|ACBD6	MULTI-MSMS	A375_MHC_IP_R2	2	613.7009887695312	2	613.301644	1224.58874	-0.44875	-0.00027522	-0.91824	-0.00056316	-1.367	-0.00083838	613.3008755171036	68.505	1.1661	69.24	68.816	69.982	0.73511					40	22	3	0	0	0	0.42595	1	25952	25952		37.075	20.132	1	4479500			5381	9714	3615	3660	5248	5248					-0.01457559130426489
DEEHFYAY	8	Unmodified	_DEEHFYAY_					0	0	0			REV__ENSG00000100353|ENST00000216190|EIF3D	REV__ENSG00000100353|ENST00000216190|EIF3D	MSMS	A375_MHC_IP_R2	2	537.2031860351562	2	537.214172	1072.41379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.67	1	51.424	50.924	51.924	0.75406								0	0	0	0.16876	1	19057	19057		5.7604	1.0044	1		+		5382	17081	3616	3661	5249	5249					-0.11951978995466561
DEEHFYAY	8	Unmodified	_DEEHFYAY_					0	0	0			REV__ENSG00000100353|ENST00000216190|EIF3D	REV__ENSG00000100353|ENST00000216190|EIF3D	MSMS	A375_MHC_IP_R2	2	537.203125	2	537.214172	1072.41379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.728	1	51.482	50.982	51.982	0.75406								0	0	0	0.16876	1	19080	19080		10.183	0.83596	1		+		5383	17081	3616	3661	5250	5250					-0.11951978995466561
DEEIYYNY	8	Unmodified	_DEEIYYNY_					0	0	0			REV__KCNV2|p.H446Tfs*8|1|0.33|ENSG00000168263|chr9:2719071-2719071|C/-|frameshift_variant	REV__KCNV2|p.H446Tfs*8|1|0.33|ENSG00000168263|chr9:2719071-2719071|C/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	554.7054443359375	2	554.727112	1107.43967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.694	1	24.694	24.194	25.194	0								0	0	0	0.16876	1	7069	7069		10.183	1.5901	1		+		5384	20836	3617	3662	5251	5251					-0.10975129543840012
DEEKIEFEWNT	11	Unmodified	_DEEKIEFEWNT_					0	0	0		ENSG00000084674|ENST00000233242|APOB;APOB|p.F2409Lfs*15|1|0.3|ENSG00000084674|chr2:21009641-21009641|A/-|frameshift_variant	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MSMS	A375_MHC_IP_R1	1	480.4453430175781	3	480.549023	1438.62524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.011	1	23.011	22.511	23.511	0								0	0	0	0.16334	1	6242	6242		0.45452	0.046251	1				5385	1799	3618	3663	5252	5252					-0.0765277181503734
DEELEIWSNI	10	Unmodified	_DEELEIWSNI_					0	0	0			REV__ENSG00000169087|ENST00000306103|HSPBAP1	REV__ENSG00000169087|ENST00000306103|HSPBAP1	MSMS	A375_MHC_IP_R2	2	416.4306335449219	3	416.531192	1246.57175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.409	1	41.183	40.683	41.683	0.77451								0	0	0	0.15486	1	14962	14962		5.0475	0	1		+		5386	20905	3619	3664	5253	5253					-0.04167524526883426
DEELHNLFY	9	Unmodified	_DEELHNLFY_					0	0	0		tr|U7SVV7|U7SVV7_FUSNUOxygen-independentcoproporphyrinogenIIIoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01354PE=4SV=1	tr|U7SVV7|U7SVV7_FUSNUOxygen-independentcoproporphyrinogenIIIoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01354PE=4SV=1	tr|U7SVV7|U7SVV7_FUSNUOxygen-independentcoproporphyrinogenIIIoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01354PE=4SV=1	MSMS	A375_MHC_IP_R1	1	589.9168701171875	2	590.269478	1178.5244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.82	1	116.82	116.32	117.32	0								0	0	0	0.15486	1	42862	42862		12.532	0.89125	1				5387	29799	3620	3665	5254	5254					-0.05771759007234323
DEENAFLRKEF	11	Unmodified	_DEENAFLRKEF_					0	0	0		ENSG00000044459|ENST00000380647|CNTLN;nc|ENSG00000044459|Q9NXG0|CNTLN;nc|ENSG00000044459|Q9NXG0-3|CNTLN	ENSG00000044459|ENST00000380647|CNTLN	ENSG00000044459|ENST00000380647|CNTLN	MULTI-MSMS	A375_MHC_IP_R2	2	466.63067626953125	3	466.561375	1396.66229	-0.51883	-0.00024207	-0.11073	-5.1665E-05	-0.62957	-0.00029373	466.56110264933363	43.258	0.30405	44.03	43.826	44.13	0.7724					9	5	2	0	0	0	0.7328	1	16149	16149		6.2344	1.8282	1	2358900			5388	1186	3621	3666	5255	5255					-0.020170554786318462
DEENAFLRKEF	11	Unmodified	_DEENAFLRKEF_					0	0	0		ENSG00000044459|ENST00000380647|CNTLN;nc|ENSG00000044459|Q9NXG0|CNTLN;nc|ENSG00000044459|Q9NXG0-3|CNTLN	ENSG00000044459|ENST00000380647|CNTLN	ENSG00000044459|ENST00000380647|CNTLN	MULTI-MATCH	A375_MHC_IP_R1	1		3	466.561375	1396.66229	-0.26458	-0.00012345	-0.36386	-0.00016976	-0.62844	-0.00029321	466.89592673149144	44.006	0.35611	44.006	43.757	44.113	0	-0.012402	-0.00022728	NaN	6.2344	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1115600			5389	1186	3621	3666							-0.020170554786318462
DEENFYAY	8	Unmodified	_DEENFYAY_					0	0	0		C4BPA|p.G188D|1|0.39|ENSG00000123838|chr1:207124223-207124223|G/A|missense_variant	C4BPA|p.G188D|1|0.39|ENSG00000123838|chr1:207124223-207124223|G/A|missense_variant	C4BPA|p.G188D|1|0.39|ENSG00000123838|chr1:207124223-207124223|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	526.1060180664062	2	525.70618	1049.39781	-0.42777	-0.00022488	-0.04164	-2.189E-05	-0.46941	-0.00024677	525.706373396174	54.593	0.81218	54.593	54.263	55.075	0					21	15	2	0	0	0	0.77603	1	19532	19532		9.3474	0	1	2110500			5390	269	3622	3667	5256	5256					-0.12491685232384953
DEENFYAY	8	Unmodified	_DEENFYAY_					0	0	0		C4BPA|p.G188D|1|0.39|ENSG00000123838|chr1:207124223-207124223|G/A|missense_variant	C4BPA|p.G188D|1|0.39|ENSG00000123838|chr1:207124223-207124223|G/A|missense_variant	C4BPA|p.G188D|1|0.39|ENSG00000123838|chr1:207124223-207124223|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	525.6661987304688	2	525.70618	1049.39781	-0.81804	-0.00043005	0.17232	9.0589E-05	-0.64572	-0.00033946	525.7065910818002	54.06	0.91814	54.811	54.301	55.22	0.75105					25	17	2	0	0	0	0.77686	1	20289	20289		6.3541	0.14832	1	1874500			5391	269	3622	3667	5257	5257					-0.12491685232384953
DEENVLRDRF	10	Unmodified	_DEENVLRDRF_					0	0	0			REV__ENSG00000114841|ENST00000420323|DNAH1	REV__ENSG00000114841|ENST00000420323|DNAH1	MULTI-SECPEP	A375_MHC_IP_R1	1	431.9456787109375	3	431.545836	1291.61568	0.32404	0.00013984	-0.20983	-9.0552E-05	0.1142	4.9284E-05	431.5455661470519	49.294	0.50639	49.294	49.033	49.54	0					19	9	3	0	0	0	0.93711	1	17428	17428		9.2438	5.6511	1	1962700	+		5392	17843	3623	3668	5258	5258					-0.018464953099282866
DEENVLRDRF	10	Unmodified	_DEENVLRDRF_					0	0	0			REV__ENSG00000114841|ENST00000420323|DNAH1	REV__ENSG00000114841|ENST00000420323|DNAH1	MULTI-SECPEP	A375_MHC_IP_R2	2	431.945556640625	3	431.545836	1291.61568	-0.27967	-0.00012069	-0.073018	-3.1511E-05	-0.35269	-0.0001522	431.5456212062474	48.679	0.40831	49.436	49.18	49.588	0.75737					13	7	2	0	0	0	0.93407	1	18324	18324		10.315	6.9956	1	1685100	+		5393	17843	3623	3668	5259	5259					-0.018464953099282866
DEEQDEEEI	9	Unmodified	_DEEQDEEEI_					0	0	0			REV__nc|ENSG00000001497|Q9Y4W2-3|LAS1L	REV__nc|ENSG00000001497|Q9Y4W2-3|LAS1L	MSMS	A375_MHC_IP_R1	1	568.2111206054688	2	568.217305	1134.42006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.967	1	98.967	98.467	99.467	0								0	0	0	0.15486	1	36358	36358		11.64	0	1		+		5394	27084	3624	3669	5260	5260					-0.14177550345266354
DEEQEEQN	8	Unmodified	_DEEQEEQN_					0	0	0			REV__ENSG00000109670|ENST00000281708|FBXW7	REV__ENSG00000109670|ENST00000281708|FBXW7	MULTI-SECPEP	A375_MHC_IP_R2	2	1020.5714111328125	1	1020.37524	1019.36796	-0.042107	-4.2965E-05	-2.9267	-0.0029863	-2.9688	-0.0030293	1020.3715119560491	107.1	0.76159	107.85	107.59	108.35	0.75436					18	14	2	0	0	0	0.972	1	40390	40390		2.5775	0	1	2943700	+		5395	17587	3625	3670	5261	5261					-0.1409466896836875
DEEQMEYLCYF	11	Unmodified	_DEEQMEYLCYF_					0	0	0			REV__nc|ENSG00000162711|Q96P20-3|NLRP3	REV__nc|ENSG00000162711|Q96P20-3|NLRP3	MSMS	A375_MHC_IP_R2	2	490.4482116699219	3	490.524833	1468.55267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.678	1	24.308	23.808	24.808	0.63014								0	0	0	0.16353	1	7662	7662		0.094841	0.021578	1		+		5396	20295	3626	3671	5262	5262					-0.16286565204472936
DEEQSPHV	8	Unmodified	_DEEQSPHV_					0	0	0			REV__ENST00000529172.1_1_11:68305336-68318669:+|nuORF	REV__ENST00000529172.1_1_11:68305336-68318669:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	471.1034851074219	2	470.703971	939.393389	-0.31306	-0.00014736	-0.40277	-0.00018959	-0.71583	-0.00033694	470.70368869804815	62.122	0.51215	62.122	61.891	62.403	0					14	9	2	0	0	0	0.7758	1	22419	22419		10.183	2.2732	1	2982500	+		5397	17614	3627	3672	5263	5263					-0.07873149655279121
DEERRKREKEM	11	Unmodified	_DEERRKREKEM_					0	0	0			REV__nc|ENSG00000196586|Q9UM54-5|MYO6	REV__nc|ENSG00000196586|Q9UM54-5|MYO6	MSMS	A375_MHC_IP_R1	1	502.6008605957031	3	502.587818	1504.74162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.903	1	31.903	31.403	32.403	0								0	0	0	0.16336	1	10258	10258		1.2148	0	1		+		5398	22211	3628	3673	5264	5264					0.009442682038752537
DEERTVIYDS	10	Unmodified	_DEERTVIYDS_					0	0	0		AIPL1|p.D50Y|1|0.43|ENSG00000129221|chr17:6434047-6434047|C/A|missense_variant	AIPL1|p.D50Y|1|0.43|ENSG00000129221|chr17:6434047-6434047|C/A|missense_variant	AIPL1|p.D50Y|1|0.43|ENSG00000129221|chr17:6434047-6434047|C/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	409.250732421875	3	409.522697	1225.54626	-0.31559	-0.00012924	-0.22465	-9.2E-05	-0.54024	-0.00022124	409.5225579930507	20.715	0.65881	21.325	20.958	21.616	0.61029					37	12	4	0	0	0	0.70174	1	6460	6460		11.518	2.5416	1	3526500			5399	91	3629	3674	5265	5265					-0.057489990493195364
DEEWTLYW	8	Unmodified	_DEEWTLYW_					0	0	0		nc|ENSG00000213471|A6NNM8-2|TTLL13;ENSG00000213471|ENST00000641754|TTLL13;nc|ENSG00000213471|A6NNM8|TTLL13	nc|ENSG00000213471|A6NNM8-2|TTLL13	nc|ENSG00000213471|A6NNM8-2|TTLL13	MSMS	A375_MHC_IP_R1	1	571.2317504882812	2	571.245472	1140.47639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.179	1	76.179	75.679	76.679	0								0	0	0	0.16876	1	27765	27765		6.3541	0	1				5400	9568	3630	3675	5266	5266					-0.08822832927262425
DEFDGKVTY	9	Unmodified	_DEFDGKVTY_					0	0	0		nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	MULTI-SECPEP	A375_MHC_IP_R1	1	536.6951904296875	2	537.242929	1072.47131	-0.56978	-0.00030611	0.46087	0.0002476	-0.10891	-5.8511E-05	537.2431674075098	51.415	0.4567	51.415	51.168	51.625	0					13	8	2	0	0	0	0.69381	1	18249	18249		20.415	3.4722	1	1646500			5401	1702	3631	3676	5267	5267					-0.06203136789895325
DEFDIANNV	9	Unmodified	_DEFDIANNV_					0	0	0			REV__PCDHA10|p.D305N|1|0.55|ENSG00000250120|chr5:140856961-140856961|G/A|missense_variant	REV__PCDHA10|p.D305N|1|0.55|ENSG00000250120|chr5:140856961-140856961|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	518.65869140625	2	518.732729	1035.4509	-1.0656	-0.00055279	0.034323	1.7805E-05	-1.0313	-0.00053498	518.7327367882968	57.361	0.81599	58.109	57.611	58.427	0.74894					33	15	3	0	0	0	0.5339	1	21808	21808		18.135	5.6034	1	2887800	+		5402	27730	3632	3677	5268	5268					-0.06540307449722604
DEFDIANNV	9	Unmodified	_DEFDIANNV_					0	0	0			REV__PCDHA10|p.D305N|1|0.55|ENSG00000250120|chr5:140856961-140856961|G/A|missense_variant	REV__PCDHA10|p.D305N|1|0.55|ENSG00000250120|chr5:140856961-140856961|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	518.732729	1035.4509	-0.55967	-0.00029032	-0.056622	-2.9371E-05	-0.6163	-0.00031969	518.7327103913171	58.09	0.86261	58.09	57.771	58.633	0	-0.0096957	-3.6332E-05	NaN	18.135	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1879700	+		5403	27730	3632	3677							-0.06540307449722604
DEFEEYDAPD	10	Unmodified	_DEFEEYDAPD_					0	0	0			REV__ENSG00000164236|ENST00000296657|ANKRD33B	REV__ENSG00000164236|ENST00000296657|ANKRD33B	MSMS	A375_MHC_IP_R2	2	615.1778564453125	2	615.227673	1228.44079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.507	1	40.281	39.781	40.781	0.77451								0	0	0	0.14601	1	14591	14591		25.399	16.654	1		+		5404	20469	3633	3678	5269	5269					-0.16428959965605827
DEFFIEPGEL	10	Unmodified	_DEFFIEPGEL_					0	0	0			REV__nc|ENSG00000135108|O94952|FBXO21	REV__nc|ENSG00000135108|O94952|FBXO21	MULTI-MSMS	A375_MHC_IP_R2	2	598.7267456054688	2	598.279512	1194.54447	-0.44795	-0.000268	-0.34294	-0.00020517	-0.79089	-0.00047317	598.2792573660738	89.888	1.2749	90.62	90.236	91.511	0.7318					57	24	4	0	0	0	0.6806	1	34092	34092		14.838	4.0143	1	8989900	+		5405	18824	3634	3679	5270	5270					-0.04502008067265706
DEFFTDIY	8	Unmodified	_DEFFTDIY_					0	0	0			REV__nc|ENSG00000038382|O75962-2|TRIO	REV__nc|ENSG00000038382|O75962-2|TRIO	MSMS	A375_MHC_IP_R2	2	525.1687622070312	2	525.226748	1048.43894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.433	1	58.182	57.682	58.682	0.74894								0	0	0	0.16876	1	21718	21718		10.183	0	1		+		5406	16328	3635	3680	5271	5271					-0.08333924192902487
DEFGDSRRRW	10	Unmodified	_DEFGDSRRRW_					0	0	0		ENST00000375457.2_2_13:113862417-113862534:-|nuORF	ENST00000375457.2_2_13:113862417-113862534:-|nuORF	ENST00000375457.2_2_13:113862417-113862534:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	442.27777099609375	3	441.877808	1322.6116	-0.031653	-1.3987E-05	-0.35093	-0.00015507	-0.38258	-0.00016905	441.87761619277956	28.677	0.60704	28.677	28.44	29.047	0					25	11	3	0	0	0	0.19136	1	8880	8880		50.13	35.173	1	16332000			5407	11272	3636	3681	5272	5272					-0.03680540012965139
DEFGDSRRRW	10	Unmodified	_DEFGDSRRRW_					0	0	0		ENST00000375457.2_2_13:113862417-113862534:-|nuORF	ENST00000375457.2_2_13:113862417-113862534:-|nuORF	ENST00000375457.2_2_13:113862417-113862534:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	442.27752685546875	3	441.877808	1322.6116	-0.44267	-0.00019561	0.033158	1.4652E-05	-0.40951	-0.00018095	441.87777053040634	27.996	0.50783	28.675	28.452	28.96	0.67857					28	9	4	0	0	0	0.54402	1	9594	9594		41.347	26.39	1	11453000			5408	11272	3636	3681	5273	5273					-0.03680540012965139
DEFHNPLAY	9	Unmodified	_DEFHNPLAY_					0	0	0		ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-MSMS	A375_MHC_IP_R1	1	553.6505737304688	2	553.251089	1104.48762	-0.44263	-0.00024489	-0.19932	-0.00011027	-0.64195	-0.00035516	553.2509109029437	78.158	0.71155	78.158	77.793	78.505	0					31	13	3	0	0	0	0.033557	1	28476	28476		71.922	54.98	1	10426000			5409	5186	3637	3682	5274	5274					-0.06044010833147695
DEFHNPLAY	9	Unmodified	_DEFHNPLAY_					0	0	0		ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	553.251089	1104.48762	-0.78652	-0.00043514	0.22134	0.00012246	-0.56518	-0.00031269	553.251099861291	77.527	0.91914	78.27	77.807	78.726	0.74293	0.056047	0.00027406	NaN	71.922	43	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8636300			5410	5186	3637	3682							-0.06044010833147695
DEFIGEKTF	9	Unmodified	_DEFIGEKTF_					0	0	0		ENSG00000152348|ENST00000282185|ATG10;nc|ENSG00000152348|Q9H0Y0-2|ATG10	ENSG00000152348|ENST00000282185|ATG10	ENSG00000152348|ENST00000282185|ATG10	MULTI-MSMS	A375_MHC_IP_R1	1	543.66064453125	2	543.261122	1084.50769	-0.13114	-7.1244E-05	0.10754	5.8421E-05	-0.023603	-1.2823E-05	543.2610749677248	69.707	0.70768	69.707	69.427	70.135	0					28	13	3	0	0	0	0.056914	1	25266	25266		61.602	17.744	1	9240800			5411	5958	3638	3683	5275	5275					-0.03118259893199138
DEFIGEKTF	9	Unmodified	_DEFIGEKTF_					0	0	0		ENSG00000152348|ENST00000282185|ATG10;nc|ENSG00000152348|Q9H0Y0-2|ATG10	ENSG00000152348|ENST00000282185|ATG10	ENSG00000152348|ENST00000282185|ATG10	MULTI-MSMS	A375_MHC_IP_R2	2	543.6607055664062	2	543.261122	1084.50769	-0.71799	-0.00039005	-0.25002	-0.00013583	-0.968	-0.00052588	543.2609473966293	69.08	0.75994	69.815	69.474	70.234	0.73511					31	14	4	0	0	0	0.035419	1	26135	26135		70.332	26.474	1	8243700			5412	5958	3638	3683	5276	5276					-0.03118259893199138
DEFLGHDTESY	11	Unmodified	_DEFLGHDTESY_					0	0	0			REV__PTCH1|p.P1402S|1|0.17|ENSG00000185920|chr9:95447052-95447052|G/A|missense_variant	REV__PTCH1|p.P1402S|1|0.17|ENSG00000185920|chr9:95447052-95447052|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	657.670654296875	2	656.770039	1311.52553	-0.72278	-0.0004747	0.081006	5.3203E-05	-0.64177	-0.0004215	656.770116669717	46.663	0.45716	47.425	47.259	47.716	0.76223					19	8	3	0	0	0	0.73283	1	17501	17501		6.2058	0.47393	1	3223900	+		5413	27854	3639	3684	5277	5277					-0.11777589428970714
DEFMKEDF	8	Unmodified	_DEFMKEDF_					0	0	0		nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2;COG2|p.E154Vfs*27|1|0.11|ENSG00000135775|chr1:230664562-230664563|-/TCAACGT|frameshift_variant;ENST00000494371.5_1_1:230778340-230804693:+|nuORF	nc|ENSG00000135775|Q14746-2|COG2	nc|ENSG00000135775|Q14746-2|COG2	MULTI-MSMS	A375_MHC_IP_R1	1	531.6212158203125	2	530.718233	1059.42191	-0.66649	-0.00035372	1.4886	0.00079001	0.82208	0.00043629	531.2212047513452	87.312	0.81334	87.312	86.831	87.644	0					30	15	3	0	0	0	0.77624	1	32117	32117		8.5933	0.68312	1	1972300			5414	4712	3640	3685	5278	5278					-0.10542168070355729
DEFPEVYRF	9	Unmodified	_DEFPEVYRF_					0	0	0		ENSG00000074935|ENST00000368662|TUBE1;ENST00000604689.1_1_6:112397497-112397677:-|nuORF	ENSG00000074935|ENST00000368662|TUBE1	ENSG00000074935|ENST00000368662|TUBE1	MULTI-MSMS	A375_MHC_IP_R1	1	601.6798095703125	2	601.279846	1200.54514	-0.36215	-0.00021775	0.31291	0.00018815	-0.049234	-2.9603E-05	601.2799554988646	98.916	0.76364	98.916	98.607	99.371	0					32	14	3	0	0	0	0.19747	1	36314	36314		38.176	18.919	1	4625600			5415	1596	3641	3686	5279	5279					-0.04711168627591178
DEFPEVYRF	9	Unmodified	_DEFPEVYRF_					0	0	0		ENSG00000074935|ENST00000368662|TUBE1;ENST00000604689.1_1_6:112397497-112397677:-|nuORF	ENSG00000074935|ENST00000368662|TUBE1	ENSG00000074935|ENST00000368662|TUBE1	MULTI-SECPEP	A375_MHC_IP_R2	2	601.6798095703125	2	601.279846	1200.54514	-0.48559	-0.00029197	-0.10791	-6.4882E-05	-0.59349	-0.00035686	601.2799279365322	98.262	0.81429	99.021	98.64	99.454	0.75977					32	15	3	0	0	0	0.32966	1	37286	37286		53.833	28.433	1	5169000			5416	1596	3641	3686	5280	5280					-0.04711168627591178
DEFPGSSATY	10	Unmodified	_DEFPGSSATY_					0	0	0		nc|ENSG00000087995|Q96IZ6-2|METTL2A;nc|ENSG00000165055|Q6P1Q9-2|METTL2B;ENST00000482555.5_1_7:128117100-128141967:+|nuORF;ENST00000333483.14_1_17:60501544-60526087:+|nuORF;ENSG00000165055|ENST00000262432|METTL2B;ENSG00000087995|ENST00000311506|METTL2A	nc|ENSG00000087995|Q96IZ6-2|METTL2A	nc|ENSG00000087995|Q96IZ6-2|METTL2A	MULTI-MSMS	A375_MHC_IP_R1	1	537.7005615234375	2	537.224736	1072.43492	-0.81986	-0.00044045	0.26819	0.00014408	-0.55167	-0.00029637	537.2248321564467	65.587	1.3724	65.587	65.005	66.377	0					79	26	4	0	0	0	0.0064649	1	23759	23759		103.75	63.3	1	22169000			5417	1881	3642	3687	5281	5281					-0.09840013686584825
DEFPGSSATY	10	Unmodified	_DEFPGSSATY_					0	0	0		nc|ENSG00000087995|Q96IZ6-2|METTL2A;nc|ENSG00000165055|Q6P1Q9-2|METTL2B;ENST00000482555.5_1_7:128117100-128141967:+|nuORF;ENST00000333483.14_1_17:60501544-60526087:+|nuORF;ENSG00000165055|ENST00000262432|METTL2B;ENSG00000087995|ENST00000311506|METTL2A	nc|ENSG00000087995|Q96IZ6-2|METTL2A	nc|ENSG00000087995|Q96IZ6-2|METTL2A	MULTI-MSMS	A375_MHC_IP_R2	2	537.62451171875	2	537.224736	1072.43492	-0.93622	-0.00050296	0.15188	8.1592E-05	-0.78434	-0.00042137	537.2247907259875	65.003	1.3714	65.741	65.206	66.577	0.73811					78	26	4	0	0	0	0.0064649	3	24572	24540;24572;24780		103.75	71.631	1	21308000			5418	1881	3642	3687	5282;5283;5284	5283					-0.09840013686584825
DEFPGVRTY	9	Unmodified	_DEFPGVRTY_					0	0	0		nc|ENSG00000157766|P16112-3|ACAN;nc|ENSG00000157766|P16112-2|ACAN;nc|ENSG00000157766|P16112|ACAN;ENSG00000157766|ENST00000560601|ACAN	nc|ENSG00000157766|P16112-3|ACAN	nc|ENSG00000157766|P16112-3|ACAN	MULTI-SECPEP	A375_MHC_IP_R1	1	542.6951293945312	2	542.258914	1082.50327	-0.60888	-0.00033017	-0.079267	-4.2983E-05	-0.68815	-0.00037316	542.2589049552689	60.479	0.86543	60.479	59.955	60.821	0					31	16	3	0	0	0	0.65623	1	21782	21782		18.373	14.429	1	3682400			5419	6265	3643	3688	5285	5285					-0.03467724316078602
DEFPGVRTY	9	Unmodified	_DEFPGVRTY_					0	0	0		nc|ENSG00000157766|P16112-3|ACAN;nc|ENSG00000157766|P16112-2|ACAN;nc|ENSG00000157766|P16112|ACAN;ENSG00000157766|ENST00000560601|ACAN	nc|ENSG00000157766|P16112-3|ACAN	nc|ENSG00000157766|P16112-3|ACAN	MULTI-MSMS	A375_MHC_IP_R2	2	542.6946411132812	2	542.258914	1082.50327	-1.1845	-0.00064228	0.22401	0.00012147	-0.96045	-0.00052081	542.2591355739902	59.899	0.75797	60.646	60.148	60.906	0.74714					27	14	3	0	0	0	0.41879	4	22605	22600;22605;22703;22732		23.79	6.8475	1	3627200			5420	6265	3643	3688	5286;5287;5288;5289	5287					-0.03467724316078602
DEFPTNLPKY	10	Unmodified	_DEFPTNLPKY_					0	0	0		ENSG00000125848|ENST00000341420|FLRT3	ENSG00000125848|ENST00000341420|FLRT3	ENSG00000125848|ENST00000341420|FLRT3	MULTI-MSMS	A375_MHC_IP_R1	1	612.7008666992188	2	612.300778	1222.587	-0.42368	-0.00025942	-0.32152	-0.00019687	-0.7452	-0.00045629	612.3005548581453	76.769	0.61143	76.769	76.471	77.083	0					18	11	2	0	0	0	0.2515	1	27991	27991		43.982	23.567	1	1854400			5421	3999	3644	3689	5290	5290					-0.015386129390662973
DEFPTNLPKY	10	Unmodified	_DEFPTNLPKY_					0	0	0		ENSG00000125848|ENST00000341420|FLRT3	ENSG00000125848|ENST00000341420|FLRT3	ENSG00000125848|ENST00000341420|FLRT3	MULTI-MSMS	A375_MHC_IP_R2	2	612.2076416015625	2	612.300778	1222.587	-0.52123	-0.00031915	-0.12788	-7.8304E-05	-0.64912	-0.00039746	612.3008520622344	76.218	0.60919	76.959	76.589	77.199	0.74052					23	11	3	0	0	0	0.38709	1	28972	28972		34.932	15.675	1	1787500			5422	3999	3644	3689	5291	5291					-0.015386129390662973
DEFRQIIQRY	10	Unmodified	_DEFRQIIQRY_					0	0	0		nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	MULTI-MSMS	A375_MHC_IP_R1	1	456.9736022949219	3	456.573726	1366.69935	-0.65115	-0.0002973	0.25326	0.00011563	-0.39789	-0.00018167	456.57391736564284	68.031	0.60706	68.031	67.754	68.361	0					27	11	3	0	0	0	0.069075	1	24656	24656		70.496	47.721	1	2767100			5423	9934	3645	3690	5292	5292					0.03066660857803072
DEFRQIIQRY	10	Unmodified	_DEFRQIIQRY_					0	0	0		nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	MULTI-MSMS	A375_MHC_IP_R2	2	456.97344970703125	3	456.573726	1366.69935	-0.2589	-0.00011821	-0.48581	-0.00022181	-0.74471	-0.00034001	456.5735814575443	67.342	0.50961	68.078	67.9	68.41	0.73631					25	9	4	0	0	0	0.017675	1	25527	25527		87.123	64.348	1	4176900			5424	9934	3645	3690	5293	5293					0.03066660857803072
DEFSEAIKAF	10	Unmodified	_DEFSEAIKAF_					0	0	0		ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	MULTI-SECPEP	A375_MHC_IP_R1	1	579.1798095703125	2	578.779679	1155.5448	-0.14881	-8.6126E-05	0.42959	0.00024864	0.28079	0.00016251	578.7798253794841	102.86	1.7753	102.86	101.95	103.72	0					58	23	4	0	0	0	0.0926	1	37733	37733		86.332	51.93	1	13160000			5425	2475	3646	3691	5294	5294					-0.026745883474404764
DEFSEAIKAF	10	Unmodified	_DEFSEAIKAF_					0	0	0		ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	MULTI-SECPEP	A375_MHC_IP_R2	2	579.1799926757812	2	578.779679	1155.5448	-0.21621	-0.00012514	0.0010638	6.1573E-07	-0.21514	-0.00012452	578.7796141552329	102.2	1.5252	102.96	102.21	103.74	0.76428					41	17	3	0	0	0	0.066228	1	38670	38670		93.166	64.084	1	13758000			5426	2475	3646	3691	5295	5295					-0.026745883474404764
DEFSHQVQEW	10	Unmodified	_DEFSHQVQEW_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	A375_MHC_IP_R1	1	653.6812744140625	2	652.780741	1303.54693	-0.72277	-0.00047181	0.51524	0.00033634	-0.20753	-0.00013547	652.7809853604168	67.424	0.86461	67.424	66.99	67.854	0					36	16	3	0	0	0	0.26783	1	24374	24374		42.312	30.818	1	21143000			5427	2857	3647	3692	5296	5296					-0.09270159609627626
DEFSHQVQEW	10	Unmodified	_DEFSHQVQEW_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-SECPEP	A375_MHC_IP_R2	2	653.1806030273438	2	652.780741	1303.54693	-0.86696	-0.00056594	0.29855	0.00019489	-0.56842	-0.00037105	652.7809803865532	66.886	0.86327	67.623	67.138	68.001	0.73631					29	16	2	0	0	0	0.019114	1	25303	25303		148.27	100.52	1	21832000			5428	2857	3647	3692	5297	5297					-0.09270159609627626
DEFTIKKNRK	10	Unmodified	_DEFTIKKNRK_					0	0	0			REV__ENSG00000172209|ENST00000304402|GPR22	REV__ENSG00000172209|ENST00000304402|GPR22	MULTI-SECPEP	A375_MHC_IP_R2	2	1278.4962158203125	1	1278.71646	1277.70918	0.23627	0.00030213	-1.5213	-0.0019453	-1.285	-0.0016431	1279.716908710394	107.71	0.15245	108.47	108.35	108.51	0.75436					6	2	3	0	0	0	0.94862	1	40693	40693		1.6526	0	1	1683000	+		5429	21128	3648	3693	5298	5298					0.08143848863164749
DEFTVNRIY	9	Unmodified	_DEFTVNRIY_					0	0	0			REV__nc|ENSG00000066468|P21802-2|FGFR2	REV__nc|ENSG00000066468|P21802-2|FGFR2	MULTI-SECPEP	A375_MHC_IP_R2	2	579.1847534179688	2	578.785296	1155.55604	-0.23316	-0.00013495	0.013869	8.0271E-06	-0.21929	-0.00012692	578.7852908127917	77.312	0.40857	78.055	77.807	78.216	0.74293					10	7	2	0	0	0	0.69507	1	29409	29409		19.257	4.4187	1	1310900	+		5430	16518	3649	3694	5299	5299					-0.01551766253282949
DEFYDRWYF	9	Unmodified	_DEFYDRWYF_					0	0	0			REV__ENSG00000113272|ENST00000231198|THG1L	REV__ENSG00000113272|ENST00000231198|THG1L	MULTI-SECPEP	A375_MHC_IP_R2	2	670.550048828125	2	670.782753	1339.55095	-0.56623	-0.00037982	-0.77107	-0.00051722	-1.3373	-0.00089704	670.7813994939112	114.93	0.35661	115.62	115.37	115.73	0.68999					10	6	2	0	0	0	0.78348	1	43234	43234		1.8442	0.36234	1	3406600	+		5431	17773	3650	3695	5300	5300					-0.10524070115911854
DEGCDHCSY	9	Unmodified	_DEGCDHCSY_					0	0	0			REV__ENSG00000062370|ENST00000354340|ZNF112	REV__ENSG00000062370|ENST00000354340|ZNF112	MSMS	A375_MHC_IP_R1	1	514.6820068359375	2	514.657849	1027.30115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.407	1	50.407	49.907	50.907	0								0	0	0	0.15486	1	17857	17857		2.3027	1.5091	1		+		5432	16458	3651	3696	5301	5301					-0.211413190554822
DEGEMFCLTPV	11	Unmodified	_DEGEMFCLTPV_					0	0	0		ENST00000514667.1_1_5:130940379-131080327:-|nuORF;ENST00000307954.12_1_5:131055067-131080342:-|nuORF;ENST00000510461.5_1_5:131066679-131080342:-|nuORF	ENST00000514667.1_1_5:130940379-131080327:-|nuORF	ENST00000514667.1_1_5:130940379-131080327:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	620.712158203125	2	620.764857	1239.51516	0.0024579	1.5258E-06	0.44814	0.00027819	0.45059	0.00027971	620.7660561946997	113.33	1.4713	113.33	112.33	113.8	0					56	28	3	0	0	0	0.99227	1	41307	41307		2.9952	0	1	7697800			5433	10593	3652	3697	5302	5302					-0.095016116794568
DEGHCGSLY	9	Unmodified	_DEGHCGSLY_					0	0	0			REV__ENSG00000180921|ENST00000388913|FAM83H	REV__ENSG00000180921|ENST00000388913|FAM83H	MULTI-MSMS	A375_MHC_IP_R2	2	491.0928649902344	2	490.692549	979.370546	-0.93044	-0.00045656	1.0134	0.00049726	0.082941	4.0699E-05	490.6929862842887	59.058	0.60892	59.805	59.438	60.047	0.74714					16	11	2	0	0	0	0.40079	2	22351	22351;22362		24.674	6.5389	1	1501800	+		5434	21629	3653	3698	5303;5304	5303					-0.11996492044409024
DEGHCGSLY	9	Unmodified	_DEGHCGSLY_					0	0	0			REV__ENSG00000180921|ENST00000388913|FAM83H	REV__ENSG00000180921|ENST00000388913|FAM83H	MULTI-SECPEP	A375_MHC_IP_R2	2	491.0928649902344	2	490.692549	979.370546	-0.93044	-0.00045656	1.0134	0.00049726	0.082941	4.0699E-05	490.6929862842887	59.058	0.60892	59.805	59.438	60.047	0.74714					16	11	2	0	0	0	0.60012	1	22351	22351		24.674	6.5389	1	1501800	+		5435	21629	3653	3698	5305	5305					-0.11996492044409024
DEGHCGSLY	9	Unmodified	_DEGHCGSLY_					0	0	0			REV__ENSG00000180921|ENST00000388913|FAM83H	REV__ENSG00000180921|ENST00000388913|FAM83H	MULTI-MATCH	A375_MHC_IP_R1	1		2	490.692549	979.370546	-0.28176	-0.00013826	0.7812	0.00038333	0.49944	0.00024507	490.6929162527505	59.691	0.60937	59.691	59.346	59.955	0	-0.057067	-0.00011599	NaN	24.674	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	985590	+		5436	21629	3653	3698							-0.11996492044409024
DEGKIFKNW	9	Unmodified	_DEGKIFKNW_					0	0	0		ENST00000538250.5_1_12:123647559-123649972:-|nuORF;nc|ENSG00000051825|Q99550-2|MPHOSPH9;ENSG00000051825|ENST00000606320|MPHOSPH9	ENST00000538250.5_1_12:123647559-123649972:-|nuORF	ENST00000538250.5_1_12:123647559-123649972:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	379.92950439453125	3	379.529346	1135.56621	0.44715	0.0001697	0.026321	9.9897E-06	0.47347	0.00017969	379.529287114529	56.624	0.35646	56.624	56.447	56.804	0					11	6	2	0	0	0	0.77396	1	20288	20288		6.6304	3.0377	1	1684000			5437	1238	3654	3699	5306	5306					0.003848414719413995
DEGKIFKNW	9	Unmodified	_DEGKIFKNW_					0	0	0		ENST00000538250.5_1_12:123647559-123649972:-|nuORF;nc|ENSG00000051825|Q99550-2|MPHOSPH9;ENSG00000051825|ENST00000606320|MPHOSPH9	ENST00000538250.5_1_12:123647559-123649972:-|nuORF	ENST00000538250.5_1_12:123647559-123649972:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	568.673828125	2	568.790381	1135.56621	-0.46865	-0.00026656	-0.66788	-0.00037988	-1.1365	-0.00064645	568.7898185764063	55.784	0.30566	56.535	56.388	56.693	0.75014					10	5	2	0	0	0	0.41434	1	21043	21043		32.786	8.7651	1	889590			5438	1238	3654	3699	5307	5307					0.003848414719413995
DEGKIFKNW	9	Unmodified	_DEGKIFKNW_					0	0	0		ENST00000538250.5_1_12:123647559-123649972:-|nuORF;nc|ENSG00000051825|Q99550-2|MPHOSPH9;ENSG00000051825|ENST00000606320|MPHOSPH9	ENST00000538250.5_1_12:123647559-123649972:-|nuORF	ENST00000538250.5_1_12:123647559-123649972:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	379.529346	1135.56621	-0.04943	-1.876E-05	-0.042876	-1.6273E-05	-0.092306	-3.5033E-05	379.5292949443956	55.866	0.45799	56.616	56.287	56.745	0.75015	-0.0042695	-4.511E-05	NaN	10.151	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1514500			5439	1238	3654	3699							0.003848414719413995
DEGKMKLDY	9	Unmodified	_DEGKMKLDY_					0	0	0		ENSG00000170889|ENST00000302907|RPS9	ENSG00000170889|ENST00000302907|RPS9	ENSG00000170889|ENST00000302907|RPS9	MULTI-SECPEP	A375_MHC_IP_R1	1	549.1613159179688	2	549.760432	1097.50631	-0.58793	-0.00032322	-1.296	-0.0007125	-1.884	-0.0010357	550.2615142515837	36.214	0.30568	36.214	36.033	36.339	0					10	5	2	0	0	0	0.67483	1	12047	12047		14.838	0	1	882850			5440	7553	3655	3700	5308	5308					-0.03854217253569914
DEGNIIIHMDA	11	Unmodified	_DEGNIIIHMDA_					0	0	0			REV__ENSG00000124257|ENST00000372518|NEURL2	REV__ENSG00000124257|ENST00000372518|NEURL2	MULTI-MSMS	A375_MHC_IP_R1	1	615.1891479492188	2	614.287345	1226.56014	-0.074842	-4.5975E-05	-2.3766	-0.0014599	-2.4514	-0.0015059	614.7879063774712	22.887	0.55417	22.887	22.52	23.074	0					22	10	4	0	0	0	0.73078	1	6186	6186		8.1555	0.54658	1	3471800	+		5441	18293	3656	3701	5309	5309					-0.04408044821866497
DEGPGKSGQSY	11	Unmodified	_DEGPGKSGQSY_					0	0	0			REV__ENST00000462514.1_1_9:139874378-139874549:+|nuORF	REV__ENST00000462514.1_1_9:139874378-139874549:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	563.1474609375	2	562.746367	1123.47818	-0.16385	-9.2204E-05	0.53437	0.00030072	0.37052	0.00020851	562.7471414496467	70.11	0.65916	70.11	69.681	70.341	0					18	12	2	0	0	0	0.53345	1	25428	25428		28.495	1.6109	1	2483800	+		5442	17481	3657	3702	5310	5310					-0.07861823909320265
DEGPGKSGQSY	11	Unmodified	_DEGPGKSGQSY_					0	0	0			REV__ENST00000462514.1_1_9:139874378-139874549:+|nuORF	REV__ENST00000462514.1_1_9:139874378-139874549:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	562.746367	1123.47818	-0.46006	-0.0002589	-0.45633	-0.0002568	-0.91639	-0.0005157	563.2468868557021	69.474	0.66074	70.208	69.879	70.54	0.73421	0.049162	-0.00057595	NaN	28.495	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1731900	+		5443	17481	3657	3702							-0.07861823909320265
DEGSDNSEVDD	11	Unmodified	_DEGSDNSEVDD_					0	0	0			REV__nc|ENSG00000138231|Q9UK59-2|DBR1	REV__nc|ENSG00000138231|Q9UK59-2|DBR1	MULTI-SECPEP	A375_MHC_IP_R1	1	591.1546020507812	2	591.207469	1180.40038	-0.36892	-0.00021811	-0.91999	-0.00054391	-1.2889	-0.00076202	591.2068736825928	37.054	0.35362	37.054	36.895	37.249	0					12	6	3	0	0	0	0.99331	1	12409	12409		8.7454	1.4562	1	2122900	+		5444	19078	3658	3703	5311	5311					-0.18259926356017786
DEGTMLRSPN	10	Unmodified	_DEGTMLRSPN_					0	0	0			REV__ENST00000461017.1_1_7:66262359-66272860:+|nuORF	REV__ENST00000461017.1_1_7:66262359-66272860:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	560.6580200195312	2	560.258588	1118.50262	-0.68744	-0.00038514	1.3565	0.00075999	0.66906	0.00037485	560.2587557410878	84.648	0.91991	84.648	84.391	85.311	0					22	17	2	0	0	0	0.87043	1	31035	31035		7.1017	0	1	2072300	+		5445	19892	3659	3704	5312	5312					-0.05188887027452438
DEGYDDDG	8	Unmodified	_DEGYDDDG_					0	0	0			REV__ENST00000590384.1_1_17:76247421-76250413:-|nuORF	REV__ENST00000590384.1_1_17:76247421-76250413:-|nuORF	MSMS	A375_MHC_IP_R2	2	443.1184997558594	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.882	1	81.627	81.127	82.127	0.74474								0	0	0	0.16876	1	30712	30712		0.79363	0	1		+		5446	26433	3660	3705	5313	5313					-0.17957700951228617
DEGYGKNAYI	10	Unmodified	_DEGYGKNAYI_					0	0	0		tr|U7SRN2|U7SRN2_FUSNUUPF0371proteinHMPREF1766_01593OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01593PE=3SV=1	tr|U7SRN2|U7SRN2_FUSNUUPF0371proteinHMPREF1766_01593OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01593PE=3SV=1	tr|U7SRN2|U7SRN2_FUSNUUPF0371proteinHMPREF1766_01593OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01593PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	564.7285766601562	2	565.261653	1128.50875	-0.48399	-0.00027358	-0.55643	-0.00031453	-1.0404	-0.00058811	565.2601790146649	98.16	0.25344	98.92	98.691	98.945	0.75977					5	4	2	0	0	0	0.91556	1	37225	37225		6.2058	0	1	650970			5447	29616	3661	3706	5314	5314					-0.050360455242980606
DEHEGPALY	9	Unmodified	_DEHEGPALY_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	A375_MHC_IP_R1	1	516.126953125	2	515.727446	1029.44034	-0.52302	-0.00026973	-0.067819	-3.4976E-05	-0.59084	-0.00030471	515.7273956142003	43.963	0.56078	43.963	43.706	44.267	0					21	10	3	0	0	0	0.27715	1	15351	15351		32.305	6.9062	1	2323800			5448	4022	3662	3707	5315	5315					-0.07320290104121341
DEHEGPALY	9	Unmodified	_DEHEGPALY_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	A375_MHC_IP_R2	2	516.126953125	2	515.727446	1029.44034	-0.62926	-0.00032453	-0.36258	-0.00018699	-0.99184	-0.00051152	515.7272550361632	43.281	0.50681	44.054	43.826	44.333	0.7724					16	9	2	0	0	0	0.27715	1	16135	16135		32.305	19.263	1	3393000			5449	4022	3662	3707	5316	5316					-0.07320290104121341
DEHEGPALY	9	Unmodified	_DEHEGPALY_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	515.727446	1029.44034	-0.62926	-0.00032453	-0.36258	-0.00018699	-0.99184	-0.00051152	515.7272550361632	43.281	0.50681	44.054	43.826	44.333	0.7724	0.045514	-0.00013947	NaN	32.305	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3393000			5450	4022	3662	3707							-0.07320290104121341
DEHEGPALYY	10	Unmodified	_DEHEGPALYY_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	A375_MHC_IP_R1	1	598.2296752929688	2	597.259111	1192.50367	-0.43615	-0.0002605	0.3216	0.00019208	-0.11456	-6.8419E-05	597.2593003980269	61.409	0.76422	61.409	61.024	61.788	0					42	14	4	0	0	0	0.48529	1	22073	22073		29.082	15.176	1	20699000			5451	4022	3663	3708	5317	5317					-0.08488349386880145
DEHEGPALYY	10	Unmodified	_DEHEGPALYY_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	A375_MHC_IP_R2	2	598.1600341796875	2	597.259111	1192.50367	-0.85451	-0.00051036	0.56927	0.00034	-0.28523	-0.00017036	597.2594068949779	60.693	0.70993	61.438	61.109	61.819	0.74504					45	13	4	0	0	0	0.25271	1	23069	23069		43.858	25.712	1	25733000			5452	4022	3663	3708	5318	5318					-0.08488349386880145
DEHFKMHSY	9	Unmodified	_DEHFKMHSY_					0	0	0			REV__ENSG00000147596|ENST00000276594|PRDM14	REV__ENSG00000147596|ENST00000276594|PRDM14	MSMS	A375_MHC_IP_R2	2	597.2325439453125	2	597.255848	1192.49714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.685	1	73.42	72.92	73.92	0.73541								0	0	0	0.15486	1	27585	27585		7.2892	0.56607	1		+		5453	19597	3664	3709	5319	5319					-0.09140565819257063
DEHGEIRSCY	10	Unmodified	_DEHGEIRSCY_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-2|PCNX2;ENST00000324142.4_1_1:233337898-233388268:-|nuORF	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MULTI-MSMS	A375_MHC_IP_R2	2	605.1572875976562	2	604.753669	1207.49279	-0.76059	-0.00045997	-2.9222	-0.0017672	-3.6828	-0.0022272	604.7526955172506	58.547	0.91366	59.296	58.729	59.643	0.74894					37	17	4	0	0	0	0.68638	1	22054	22054		14.405	3.5815	1	5913000			5454	4709	3665	3710	5320	5320					-0.10266075032814115
DEHIQMMLDGG	11	Unmodified	_DEHIQMMLDGG_					0	0	0			REV__ENSG00000160447|ENST00000291906|PKN3	REV__ENSG00000160447|ENST00000291906|PKN3	MSMS	A375_MHC_IP_R1	1	623.1596069335938	2	623.265555	1244.51656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.217	1	85.217	84.717	85.717	0								0	0	0	0.16124	1	31228	31228		12.241	0.74595	1		+		5455	20171	3666	3711	5321	5321					-0.09591977590662282
DEHSPFEFL	9	Unmodified	_DEHSPFEFL_					0	0	0		ENSG00000132464|ENST00000396073|ENAM	ENSG00000132464|ENST00000396073|ENAM	ENSG00000132464|ENST00000396073|ENAM	MULTI-MSMS	A375_MHC_IP_R1	1	561.1702270507812	2	560.750921	1119.48729	-0.48382	-0.0002713	-0.25167	-0.00014112	-0.73549	-0.00041242	560.7508625561092	73.665	0.45606	73.665	73.437	73.893	0					15	8	2	0	0	0	0.32899	1	26901	26901		28.487	11.545	1	2426300			5456	4410	3667	3712	5322	5322					-0.06767430553009035
DEHYDDQFN	9	Unmodified	_DEHYDDQFN_					0	0	0			REV__ENSG00000169071|ENST00000375708|ROR2	REV__ENSG00000169071|ENST00000375708|ROR2	MULTI-MSMS	A375_MHC_IP_R1	1	592.1197509765625	2	591.72035	1181.42615	-0.24933	-0.00014753	-0.12015	-7.1093E-05	-0.36948	-0.00021863	591.7202067653323	62.276	0.81941	62.276	61.943	62.762	0					54	15	5	0	0	0	0.6656	1	22434	22434		10.074	4.3421	1	18809000	+		5457	20903	3668	3713	5323	5323					-0.15730987323081536
DEHYDDQFN	9	Unmodified	_DEHYDDQFN_					0	0	0			REV__ENSG00000169071|ENST00000375708|ROR2	REV__ENSG00000169071|ENST00000375708|ROR2	MULTI-SECPEP	A375_MHC_IP_R1	1	592.1197509765625	2	591.72035	1181.42615	-0.24933	-0.00014753	-0.12015	-7.1093E-05	-0.36948	-0.00021863	591.7202067653323	62.276	0.81941	62.276	61.943	62.762	0					54	15	5	0	0	0	0.77396	1	22434	22434		10.074	4.3421	1	18809000	+		5458	20903	3668	3713	5324	5324					-0.15730987323081536
DEHYDDQFN	9	Unmodified	_DEHYDDQFN_					0	0	0			REV__ENSG00000169071|ENST00000375708|ROR2	REV__ENSG00000169071|ENST00000375708|ROR2	MULTI-MSMS	A375_MHC_IP_R2	2	592.1793823242188	2	591.72035	1181.42615	-0.86224	-0.00051021	-0.21133	-0.00012505	-1.0736	-0.00063526	591.7201563323018	61.757	0.85787	62.499	62.17	63.028	0.74263					47	16	4	0	0	0	0.70307	1	23488	23488		6.7232	6.7232	1	18112000	+		5459	20903	3668	3713	5325	5325					-0.15730987323081536
DEHYDDQFN	9	Unmodified	_DEHYDDQFN_					0	0	0			REV__ENSG00000169071|ENST00000375708|ROR2	REV__ENSG00000169071|ENST00000375708|ROR2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	591.72035	1181.42615	-0.86224	-0.00051021	-0.21133	-0.00012505	-1.0736	-0.00063526	591.7201563323018	61.757	0.85787	62.499	62.17	63.028	0.74263	0.11194	-6.7722E-05	NaN	10.074	47	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18112000	+		5460	20903	3668	3713							-0.15730987323081536
DEHYWWKTKKP	11	Unmodified	_DEHYWWKTKKP_					0	0	0			REV__ENST00000362030.3_1_1:96884238-96884478:+|nuORF	REV__ENST00000362030.3_1_1:96884238-96884478:+|nuORF	MSMS	A375_MHC_IP_R1	1	506.6349792480469	3	506.589376	1516.7463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.509	1	38.509	38.009	39.009	0								0	0	0	0.16305	1	13071	13071		2.8433	0.4085	1		+		5461	23929	3669	3714	5326	5326					0.00859520408903336
DEIDAIATKRF	11	Unmodified	_DEIDAIATKRF_					0	0	0		ENSG00000013275|ENST00000157812|PSMC4;ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;ENST00000601697.5_1_19:40477100-40486546:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4	ENSG00000013275|ENST00000157812|PSMC4	ENSG00000013275|ENST00000157812|PSMC4	MULTI-SECPEP	A375_MHC_IP_R1	1	427.2942199707031	3	426.894465	1277.66157	-0.11052	-4.7179E-05	-0.21721	-9.2726E-05	-0.32773	-0.00013991	426.8943662155332	59.526	0.91489	59.526	59.194	60.109	0					57	17	5	0	0	0	0.040316	1	21359	21359		94.801	71	1	43534000			5462	1016	3670	3715	5327	5327					0.03384149872317721
DEIDAIATKRF	11	Unmodified	_DEIDAIATKRF_					0	0	0		ENSG00000013275|ENST00000157812|PSMC4;ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;ENST00000601697.5_1_19:40477100-40486546:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4	ENSG00000013275|ENST00000157812|PSMC4	ENSG00000013275|ENST00000157812|PSMC4	MULTI-SECPEP	A375_MHC_IP_R1	1	640.2378540039062	2	639.838059	1277.66157	-0.61355	-0.00039258	0.0020821	1.3322E-06	-0.61147	-0.00039124	639.8380397407194	59.524	0.71052	59.524	59.245	59.955	0					33	13	4	0	0	0	0.28137	1	21375	21375		87.123	58.629	1	21698000			5463	1016	3670	3715	5328	5328					0.03384149872317721
DEIDAIATKRF	11	Unmodified	_DEIDAIATKRF_					0	0	0		ENSG00000013275|ENST00000157812|PSMC4;ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;ENST00000601697.5_1_19:40477100-40486546:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4	ENSG00000013275|ENST00000157812|PSMC4	ENSG00000013275|ENST00000157812|PSMC4	MULTI-SECPEP	A375_MHC_IP_R2	2	427.294189453125	3	426.894465	1277.66157	-0.54761	-0.00023377	-0.25138	-0.00010731	-0.79899	-0.00034109	426.89435176071686	58.818	1.0638	59.565	59.185	60.249	0.74714					59	20	5	0	0	0	0.015491	1	22200	22200		120.54	82.772	1	52261000			5464	1016	3670	3715	5329	5329					0.03384149872317721
DEIDAIATKRF	11	Unmodified	_DEIDAIATKRF_					0	0	0		ENSG00000013275|ENST00000157812|PSMC4;ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;ENST00000601697.5_1_19:40477100-40486546:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4	ENSG00000013275|ENST00000157812|PSMC4	ENSG00000013275|ENST00000157812|PSMC4	MULTI-SECPEP	A375_MHC_IP_R2	2	640.2372436523438	2	639.838059	1277.66157	-1.1132	-0.00071229	0.01141	7.3007E-06	-1.1018	-0.00070499	639.8380344423693	58.809	0.66118	59.556	59.235	59.896	0.74714					34	12	4	0	0	0	0.39384	1	22219	22219		80.896	48.858	1	16312000			5465	1016	3670	3715	5330	5330					0.03384149872317721
DEIDAIGGARF	11	Unmodified	_DEIDAIGGARF_					0	0	0		nc|ENSG00000161057|P35998-2|PSMC2;ENSG00000161057|ENST00000292644|PSMC2	nc|ENSG00000161057|P35998-2|PSMC2	nc|ENSG00000161057|P35998-2|PSMC2	MULTI-SECPEP	A375_MHC_IP_R1	1	582.6881103515625	2	582.288202	1162.56185	-0.042165	-2.4552E-05	0.20599	0.00011995	0.16383	9.5394E-05	582.2883201315454	78.655	0.45509	78.655	78.403	78.859	0					16	8	3	0	0	0	0.16819	1	28692	28692		65.474	36.392	1	2419500			5466	6463	3671	3716	5331	5331					-0.012926677416317034
DEIDAIGGARF	11	Unmodified	_DEIDAIGGARF_					0	0	0		nc|ENSG00000161057|P35998-2|PSMC2;ENSG00000161057|ENST00000292644|PSMC2	nc|ENSG00000161057|P35998-2|PSMC2	nc|ENSG00000161057|P35998-2|PSMC2	MULTI-SECPEP	A375_MHC_IP_R2	2	582.687744140625	2	582.288202	1162.56185	-0.36172	-0.00021062	0.18619	0.00010842	-0.17553	-0.00010221	582.2884083876005	78.042	0.56219	78.785	78.52	79.082	0.74293					20	10	3	0	0	0	0.46316	1	29616	29616		43.982	24.725	1	2421000			5467	6463	3671	3716	5332	5332					-0.012926677416317034
DEIDAIGGRRF	11	Unmodified	_DEIDAIGGRRF_					0	0	0		ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	MULTI-SECPEP	A375_MHC_IP_R1	1	417.2825927734375	3	416.882559	1247.62585	0.14272	5.9497E-05	-0.1599	-6.6659E-05	-0.017181	-7.1623E-06	416.88252936965796	52.565	0.91171	52.565	52.237	53.148	0					59	17	5	0	0	0	0.041845	1	18645	18645		55.467	46.223	1	102580000			5468	2188	3672	3717	5333	5333					0.011941124153281635
DEIDAIGGRRF	11	Unmodified	_DEIDAIGGRRF_					0	0	0		ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	MULTI-SECPEP	A375_MHC_IP_R1	1	625.2194213867188	2	624.820201	1247.62585	-0.61413	-0.00038372	0.10886	6.8016E-05	-0.50528	-0.00031571	624.8202836727246	52.567	0.81194	52.567	52.287	53.099	0					41	15	4	0	0	0	0.00096206	1	18661	18661		143.21	108.28	1	36951000			5469	2188	3672	3717	5334	5334					0.011941124153281635
DEIDAIGGRRF	11	Unmodified	_DEIDAIGGRRF_					0	0	0		ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	MULTI-MSMS	A375_MHC_IP_R2	2	417.2822570800781	3	416.882559	1247.62585	-0.35898	-0.00014965	-0.07086	-2.954E-05	-0.42984	-0.00017919	416.8825287542669	51.937	1.2691	52.689	52.321	53.59	0.75225					66	24	5	0	0	0	0.063241	1	19508	19508		55.467	32.692	1	101860000			5470	2188	3672	3717	5335	5335					0.011941124153281635
DEIDAIGGRRF	11	Unmodified	_DEIDAIGGRRF_					0	0	0		ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	MULTI-SECPEP	A375_MHC_IP_R2	2	625.2198486328125	2	624.820201	1247.62585	-1.1023	-0.00068873	-0.20655	-0.00012906	-1.3088	-0.00081779	624.8203027694516	51.901	0.6604	52.653	52.423	53.083	0.75225					38	12	5	0	0	0	0.0092858	1	19528	19528		121.5	93.009	1	33504000			5471	2188	3672	3717	5336	5336					0.011941124153281635
DEIDAIGTKRY	11	Unmodified	_DEIDAIGTKRY_					0	0	0		nc|ENSG00000100764|P62191-2|PSMC1;ENSG00000100764|ENST00000261303|PSMC1;ENST00000555787.1_1_14:90734518-90735894:+|nuORF	nc|ENSG00000100764|P62191-2|PSMC1	nc|ENSG00000100764|P62191-2|PSMC1	MULTI-MSMS	A375_MHC_IP_R1	1	427.954345703125	3	427.55422	1279.64083	-0.10368	-4.433E-05	0.27861	0.00011912	0.17493	7.4791E-05	427.55428218657374	38.602	0.40917	38.602	38.371	38.78	0					19	7	3	0	0	0	0.067248	1	13095	13095		76.068	50.048	1	15004000			5472	2217	3673	3718	5337	5337					0.01219559492665212
DEIDAIGTKRY	11	Unmodified	_DEIDAIGTKRY_					0	0	0		nc|ENSG00000100764|P62191-2|PSMC1;ENSG00000100764|ENST00000261303|PSMC1;ENST00000555787.1_1_14:90734518-90735894:+|nuORF	nc|ENSG00000100764|P62191-2|PSMC1	nc|ENSG00000100764|P62191-2|PSMC1	MULTI-MSMS	A375_MHC_IP_R1	1	641.2274780273438	2	640.827692	1279.64083	-0.55789	-0.00035751	-0.015165	-9.7184E-06	-0.57306	-0.00036723	640.8278180870082	38.577	0.51082	38.577	38.371	38.882	0					18	9	3	0	0	0	0.00031245	1	13109	13109		154.04	96.315	1	5903900			5473	2217	3673	3718	5338	5338					0.01219559492665212
DEIDAIGTKRY	11	Unmodified	_DEIDAIGTKRY_					0	0	0		nc|ENSG00000100764|P62191-2|PSMC1;ENSG00000100764|ENST00000261303|PSMC1;ENST00000555787.1_1_14:90734518-90735894:+|nuORF	nc|ENSG00000100764|P62191-2|PSMC1	nc|ENSG00000100764|P62191-2|PSMC1	MULTI-MSMS	A375_MHC_IP_R2	2	427.9538269042969	3	427.55422	1279.64083	-0.38287	-0.0001637	-0.069284	-2.9623E-05	-0.45215	-0.00019332	427.55414980014336	37.895	0.56455	38.669	38.432	38.997	0.77451					26	10	4	0	0	0	0.17351	1	13896	13896		57.477	42.52	1	14298000			5474	2217	3673	3718	5339	5339					0.01219559492665212
DEIDAIGTKRY	11	Unmodified	_DEIDAIGTKRY_					0	0	0		nc|ENSG00000100764|P62191-2|PSMC1;ENSG00000100764|ENST00000261303|PSMC1;ENST00000555787.1_1_14:90734518-90735894:+|nuORF	nc|ENSG00000100764|P62191-2|PSMC1	nc|ENSG00000100764|P62191-2|PSMC1	MULTI-MSMS	A375_MHC_IP_R2	2	641.2269287109375	2	640.827692	1279.64083	-0.93356	-0.00059825	0.042409	2.7177E-05	-0.89115	-0.00057107	640.8276516610214	37.938	0.46342	38.713	38.483	38.946	0.77451					17	8	3	0	0	0	0.0094376	1	13914	13914		118.81	71.064	1	6949700			5475	2217	3673	3718	5340	5340					0.01219559492665212
DEIENVAKQF	10	Unmodified	_DEIENVAKQF_					0	0	0		nc|ENSG00000111726|Q8NFW8-2|CMAS;ENSG00000111726|ENST00000229329|CMAS	nc|ENSG00000111726|Q8NFW8-2|CMAS	nc|ENSG00000111726|Q8NFW8-2|CMAS	MULTI-MSMS	A375_MHC_IP_R1	1	597.4635009765625	2	596.79586	1191.57717	-0.44537	-0.00026579	0.36767	0.00021943	-0.077693	-4.6367E-05	596.7960279504582	76.04	1.1099	76.04	75.614	76.724	0					60	21	4	0	0	0	2.1049E-23	2	27717	27641;27717		250.47	202.72	1	70105000			5476	3023	3674	3719	5341;5342	5342					-0.010958009444493655
DEIENVAKQF	10	Unmodified	_DEIENVAKQF_					0	0	0		nc|ENSG00000111726|Q8NFW8-2|CMAS;ENSG00000111726|ENST00000229329|CMAS	nc|ENSG00000111726|Q8NFW8-2|CMAS	nc|ENSG00000111726|Q8NFW8-2|CMAS	MULTI-MSMS	A375_MHC_IP_R2	2	597.3121337890625	2	596.79586	1191.57717	-0.58292	-0.00034788	0.1615	9.6384E-05	-0.42142	-0.0002515	596.7959121264477	75.416	0.96696	76.156	75.775	76.742	0.74052					65	18	5	0	0	0	2.3051000000000003E-41	2	28636	28568;28636		266.8	210.62	1	64267000			5477	3023	3674	3719	5343;5344	5344					-0.010958009444493655
DEIERKFDKW	10	Unmodified	_DEIERKFDKW_					0	0	0		nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31	nc|ENSG00000105618|Q8WWY3-2|PRPF31	nc|ENSG00000105618|Q8WWY3-2|PRPF31	MULTI-SECPEP	A375_MHC_IP_R1	1	456.2978820800781	3	455.898098	1364.67246	-0.23447	-0.00010689	0.032549	1.4839E-05	-0.20192	-9.2055E-05	455.89809841720006	43.996	0.81641	43.996	43.655	44.471	0					45	15	4	0	0	0	0.3907	1	15281	15281		61.165	38.39	1	28847000			5478	14526	3675	3720	5345	5345					0.004715522466085531
DEIERKFDKW	10	Unmodified	_DEIERKFDKW_					0	0	0		nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31	nc|ENSG00000105618|Q8WWY3-2|PRPF31	nc|ENSG00000105618|Q8WWY3-2|PRPF31	MULTI-SECPEP	A375_MHC_IP_R2	2	456.2976989746094	3	455.898098	1364.67246	-0.10416	-4.7488E-05	-0.40189	-0.00018322	-0.50606	-0.00023071	455.8978621050241	43.238	0.90955	44.01	43.674	44.583	0.7724					46	17	5	0	0	0	0.24759	1	16069	16069		45.004	19.006	1	34923000			5479	14526	3675	3720	5346	5346					0.004715522466085531
DEIESVKEL	9	Unmodified	_DEIESVKEL_					0	0	0		nc|ENSG00000259207|P05106-2|ITGB3;nc|ENSG00000259207|P05106-3|ITGB3;ENSG00000259207|ENST00000559488|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	MULTI-SECPEP	A375_MHC_IP_R2	2	531.358642578125	2	531.271687	1060.52882	-0.84031	-0.00044643	-0.62862	-0.00033397	-1.4689	-0.0007804	531.2710996647977	54.67	0.86307	55.42	54.916	55.779	0.75075					30	16	3	0	0	0	0.074405	1	20648	20648		70.332	7.7593	1	11759000			5480	9926	3676	3721	5347	5347					0.0009770541569196212
DEIKRLGKRF	10	Unmodified	_DEIKRLGKRF_					0	0	0		ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	MULTI-MSMS	A375_MHC_IP_R1	1	421.65045166015625	3	421.250695	1260.73025	-0.15777	-6.646E-05	-0.17602	-7.415E-05	-0.33379	-0.00014061	421.2506490175868	24.269	0.30471	24.269	24.143	24.447	0					11	5	3	0	0	0	0.72006	1	6891	6891		3.3196	0.24738	1	3730500			5481	9664	3677	3722	5348	5348					0.11031858962701335
DEILHLVPFPN	11	Unmodified	_DEILHLVPFPN_					0	0	0			REV__ENSG00000166387|ENST00000299492|PPFIBP2	REV__ENSG00000166387|ENST00000299492|PPFIBP2	MULTI-SECPEP	A375_MHC_IP_R1	1	647.24072265625	2	647.34552	1292.67649	-0.29171	-0.00018884	-4.2947	-0.0027802	-4.5864	-0.002969	647.3434567293851	97.931	0.40925	97.931	97.691	98.101	0					9	7	2	0	0	0	0.9836	1	35992	35992		16.149	0.90062	1	777040	+		5482	20674	3678	3723	5349	5349					0.04185641740355095
DEINHAEDL	9	Unmodified	_DEINHAEDL_					0	0	0			REV__nc|ENSG00000136492|Q9BX63-2|BRIP1	REV__nc|ENSG00000136492|Q9BX63-2|BRIP1	MULTI-MSMS	A375_MHC_IP_R1	1	528.635009765625	2	528.235635	1054.45672	-0.56307	-0.00029744	-0.37496	-0.00019807	-0.93804	-0.0004955	528.2353339362409	61.05	0.66193	61.05	60.669	61.331	0					23	12	3	0	0	0	0.55818	2	21975	21975;21979		16.942	1.0951	1	4401200	+		5483	18941	3679	3724	5350;5351	5350					-0.06833208938064672
DEINHVQKTY	10	Unmodified	_DEINHVQKTY_					0	0	0		nc|ENSG00000103510|Q9H7Z6-2|KAT8;ENSG00000103510|ENST00000219797|KAT8	nc|ENSG00000103510|Q9H7Z6-2|KAT8	nc|ENSG00000103510|Q9H7Z6-2|KAT8	MULTI-MSMS	A375_MHC_IP_R1	1	416.606689453125	3	416.206932	1245.59897	-0.047464	-1.9755E-05	-0.1155	-4.8072E-05	-0.16297	-6.7827E-05	416.20679661565146	23.508	0.30553	23.508	23.33	23.635	0					14	5	4	0	0	0	0.12159	1	6478	6478		59.013	31.925	1	28138000			5484	2458	3680	3725	5352	5352					-0.014009961958436179
DEINHVQKTY	10	Unmodified	_DEINHVQKTY_					0	0	0		nc|ENSG00000103510|Q9H7Z6-2|KAT8;ENSG00000103510|ENST00000219797|KAT8	nc|ENSG00000103510|Q9H7Z6-2|KAT8	nc|ENSG00000103510|Q9H7Z6-2|KAT8	MULTI-SECPEP	A375_MHC_IP_R1	1	624.2063598632812	2	623.806759	1245.59897	-0.81322	-0.00050729	0.17107	0.00010672	-0.64215	-0.00040058	623.8067340108277	23.508	0.25457	23.508	23.381	23.635	0					10	4	3	0	0	0	0.032847	1	6493	6493		160.97	128.18	1	11862000			5485	2458	3680	3725	5353	5353					-0.014009961958436179
DEINHVQKTY	10	Unmodified	_DEINHVQKTY_					0	0	0		nc|ENSG00000103510|Q9H7Z6-2|KAT8;ENSG00000103510|ENST00000219797|KAT8	nc|ENSG00000103510|Q9H7Z6-2|KAT8	nc|ENSG00000103510|Q9H7Z6-2|KAT8	MULTI-MSMS	A375_MHC_IP_R2	2	416.6063232421875	3	416.206932	1245.59897	-0.36359	-0.00015133	-0.45017	-0.00018736	-0.81376	-0.00033869	416.2067007418292	21.443	0.35667	22.062	21.928	22.285	0.61932					18	6	4	0	0	0	0.054029	1	6755	6755		74.772	49.815	1	11123000			5486	2458	3680	3725	5354	5354					-0.014009961958436179
DEINHVQKTY	10	Unmodified	_DEINHVQKTY_					0	0	0		nc|ENSG00000103510|Q9H7Z6-2|KAT8;ENSG00000103510|ENST00000219797|KAT8	nc|ENSG00000103510|Q9H7Z6-2|KAT8	nc|ENSG00000103510|Q9H7Z6-2|KAT8	MULTI-MSMS	A375_MHC_IP_R2	2	416.6065673828125	3	416.206932	1245.59897	-0.37074	-0.0001543	-0.20468	-8.5191E-05	-0.57542	-0.00023949	416.2068235565145	22.623	1.2258	23.253	22.397	23.623	0.63014					36	23	2	0	0	0	0.32622	1	7105	7105		38.559	25.703	1	2858500			5487	2458	3680	3725	5355	5355					-0.014009961958436179
DEINHVQKTY	10	Unmodified	_DEINHVQKTY_					0	0	0		nc|ENSG00000103510|Q9H7Z6-2|KAT8;ENSG00000103510|ENST00000219797|KAT8	nc|ENSG00000103510|Q9H7Z6-2|KAT8	nc|ENSG00000103510|Q9H7Z6-2|KAT8	MULTI-SECPEP	A375_MHC_IP_R2	2	416.60675048828125	3	416.206932	1245.59897	-0.32111	-0.00013365	-0.4004	-0.00016665	-0.7215	-0.00030029	416.20682675517406	23.474	0.40466	24.104	23.928	24.333	0.63014					11	7	2	0	0	0	0.90513	1	7595	7595		10.899	6.7823	1	7793200			5488	2458	3680	3725	5356	5356					-0.014009961958436179
DEINHVQKTY	10	Unmodified	_DEINHVQKTY_					0	0	0		nc|ENSG00000103510|Q9H7Z6-2|KAT8;ENSG00000103510|ENST00000219797|KAT8	nc|ENSG00000103510|Q9H7Z6-2|KAT8	nc|ENSG00000103510|Q9H7Z6-2|KAT8	MULTI-SECPEP	A375_MHC_IP_R2	2	624.2061767578125	2	623.806759	1245.59897	-1.103	-0.00068805	-0.65119	-0.00040622	-1.7542	-0.0010943	623.8066343631793	21.471	0.25507	22.091	21.928	22.184	0.61932					10	4	3	0	0	0	0.026848	1	6754	6754		102.55	76.281	1	4580400			5489	2458	3680	3725	5357	5357					-0.014009961958436179
DEINHVQKTY	10	Unmodified	_DEINHVQKTY_					0	0	0		nc|ENSG00000103510|Q9H7Z6-2|KAT8;ENSG00000103510|ENST00000219797|KAT8	nc|ENSG00000103510|Q9H7Z6-2|KAT8	nc|ENSG00000103510|Q9H7Z6-2|KAT8	MULTI-MATCH	A375_MHC_IP_R2	2		2	623.806759	1245.59897	-1.1111	-0.0006931	0.36719	0.00022906	-0.74389	-0.00046404	623.8069203147577	22.63	0.51188	23.26	22.856	23.368	0.63014	-0.12393	0.00016777	NaN	160.97	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	834890			5490	2458	3680	3725							-0.014009961958436179
DEINVYTKG	9	Unmodified	_DEINVYTKG_					0	0	0		ENST00000555815.5_1_15:25924490-25961922:-|nuORF;ENSG00000206190|ENST00000555815|ATP10A	ENST00000555815.5_1_15:25924490-25961922:-|nuORF	ENST00000555815.5_1_15:25924490-25961922:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	519.6613159179688	2	519.758746	1037.50294	-0.9687	-0.00050349	0.32865	0.00017082	-0.64005	-0.00033267	519.7589968746446	60.391	1.8241	61.136	60.297	62.121	0.74503					124	35	6	0	0	0	0.67332	1	22621	22621		9.3831	1.473	1	176450000			5491	9537	3681	3726	5358	5358					-0.014311440359506378
DEIPELQQQVP	11	Unmodified	_DEIPELQQQVP_					0	0	0		ENSG00000162543|ENST00000375099|UBXN10	ENSG00000162543|ENST00000375099|UBXN10	ENSG00000162543|ENST00000375099|UBXN10	MULTI-MSMS	A375_MHC_IP_R1	1	648.72705078125	2	648.327524	1294.6405	-0.42608	-0.00027624	-0.12817	-8.3093E-05	-0.55425	-0.00035933	648.3275988320869	65.317	0.51009	65.317	65.055	65.565	0					18	9	3	0	0	0	0.56199	1	23646	23646		26.268	2.4784	1	2520900			5492	6547	3682	3727	5359	5359					0.004961397728038719
DEIPELQQQVP	11	Unmodified	_DEIPELQQQVP_					0	0	0		ENSG00000162543|ENST00000375099|UBXN10	ENSG00000162543|ENST00000375099|UBXN10	ENSG00000162543|ENST00000375099|UBXN10	MULTI-MATCH	A375_MHC_IP_R2	2		2	648.327524	1294.6405	-0.635	-0.00041169	0.17352	0.0001125	-0.46149	-0.0002992	648.8287052714103	64.545	0.66157	65.285	65.004	65.666	0.74022	-0.016211	0.00018206	NaN	26.268	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2260700			5493	6547	3682	3727							0.004961397728038719
DEIRLTRMK	9	Unmodified	_DEIRLTRMK_					0	0	0			REV__ENST00000481895.5_1_1:33256818-33282875:-|nuORF	REV__ENST00000481895.5_1_1:33256818-33282875:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	388.6324768066406	3	387.885135	1160.63358	0.28038	0.00010876	0.66785	0.00025905	0.94823	0.00036781	387.88532303269864	28.642	0.40419	28.642	28.491	28.895	0					11	7	2	0	0	0	0.77003	1	8836	8836		4.5289	0	1	1684900	+		5494	25269	3683	3728	5360	5360					0.05968548411237862
DEIRLTRMK	9	Unmodified	_DEIRLTRMK_					0	0	0			REV__ENST00000481895.5_1_1:33256818-33282875:-|nuORF	REV__ENST00000481895.5_1_1:33256818-33282875:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	388.6325378417969	3	387.885135	1160.63358	-0.15502	-6.0131E-05	1.1466	0.00044474	0.99154	0.0003846	387.8854941335263	27.748	0.25198	28.426	28.301	28.553	0.67857					6	4	2	0	0	0	0.77003	1	9567	9567		7.609	0	1	1481100	+		5495	25269	3683	3728	5361	5361					0.05968548411237862
DEISFQTVY	9	Unmodified	_DEISFQTVY_					0	0	0		ENSG00000157985|ENST00000304032|AGAP1;ENST00000490839.1_1_7:150814483-150814980:+|nuORF;nc|ENSG00000133612|Q96P47-3|AGAP3;nc|ENSG00000133612|Q96P47-6|AGAP3;nc|ENSG00000157985|Q9UPQ3-3|AGAP1;AGAP3|p.L419Rfs*6|1|0.23|ENSG00000133612|chr7:151134437-151134437|T/-|frameshift_variant;nc|ENSG00000157985|Q9UPQ3-2|AGAP1;nc|ENSG00000133612|Q96P47|AGAP3;nc|ENSG00000133612|Q96P47-2|AGAP3;ENSG00000133612|ENST00000397238|AGAP3	ENSG00000157985|ENST00000304032|AGAP1	ENSG00000157985|ENST00000304032|AGAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	551.6586303710938	2	551.258579	1100.50261	-0.51034	-0.00028133	-1.7253	-0.00095107	-2.2356	-0.0012324	551.2587501859042	103.3	1.1195	103.3	102.86	103.98	0					38	21	3	0	0	0	0.4261	1	38010	38010		30.637	2.1497	1	988090			5496	6279	3684	3729	5362	5362					-0.043625637557852315
DEITESNIFF	10	Unmodified	_DEITESNIFF_					0	0	0			REV__ZNF518B|p.S453F|1|0.79|ENSG00000178163|chr4:10444971-10444971|G/A|missense_variant	REV__ZNF518B|p.S453F|1|0.79|ENSG00000178163|chr4:10444971-10444971|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	607.0696411132812	2	607.782418	1213.55028	-0.29773	-0.00018095	0.55277	0.00033596	0.25504	0.00015501	607.7816977492895	79.726	1.531	79.726	79.061	80.592	0					59	29	4	0	0	0	0.85226	1	29400	29400		10.074	0.6908	1	3691200	+		5497	29045	3685	3730	5363	5363					-0.04794909555630511
DEITPKLIRD	10	Unmodified	_DEITPKLIRD_					0	0	0		ENSG00000064763|ENST00000536681|FAR2;nc|ENSG00000064763|Q96K12-2|FAR2;FAR2|p.I189S|1|0.25|ENSG00000064763|chr12:29307678-29307678|T/G|missense_variant	ENSG00000064763|ENST00000536681|FAR2	ENSG00000064763|ENST00000536681|FAR2	MULTI-SECPEP	A375_MHC_IP_R1	1	600.7335205078125	2	600.335153	1198.65575	-0.48607	-0.00029181	-0.99438	-0.00059696	-1.4805	-0.00088877	600.3337955115087	129.1	2.2867	129.1	128.13	130.41	0					120	44	5	0	0	0	0.92957	1	49988	49988		3.2813	0	1	96536000			5498	1359	3686	3731	5364	5364					0.06437051360649093
DEKIHNYIY	9	Unmodified	_DEKIHNYIY_					0	0	0			REV__tr|U7STI1|U7STI1_FUSNUHollidayjunctionbranchmigrationcomplexsubunitRuvAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ruvAPE=3SV=1	REV__tr|U7STI1|U7STI1_FUSNUHollidayjunctionbranchmigrationcomplexsubunitRuvAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ruvAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	597.6427001953125	2	597.793121	1193.57169	-0.3695	-0.00022089	-0.73706	-0.00044061	-1.1066	-0.0006615	597.7920397698284	61.82	0.30812	61.82	61.686	61.994	0					7	5	2	0	0	0	0.77396	1	22350	22350		10.074	3.8681	1	733380	+		5499	28488	3687	3732	5365	5365					-0.01735479736248635
DEKKKEKPNY	10	Unmodified	_DEKKKEKPNY_					0	0	0			REV__tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	REV__tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	426.9750671386719	3	426.894465	1277.66157	-0.45343	-0.00019357	-0.14456	-6.1713E-05	-0.598	-0.00025528	427.22869088667596	57.854	0.50401	58.603	58.375	58.879	0.74894					19	9	3	0	0	0	0.91643	1	21893	21893		12.175	5.9829	1	2154400	+		5500	28535	3688	3733	5366	5366					0.033841498723404584
DEKKRIQI	8	Unmodified	_DEKKRIQI_					0	0	0			REV__L1M1_dup4528|chr9:5911835-5912397:-|14.08193021188599|0.1044078635288352|7.08|469.0|1|1|sense	REV__L1M1_dup4528|chr9:5911835-5912397:-|14.08193021188599|0.1044078635288352|7.08|469.0|1|1|sense	MULTI-MSMS	A375_MHC_IP_R2	2	515.7058715820312	2	515.306198	1028.59784	-0.69094	-0.00035605	0.082444	4.2484E-05	-0.6085	-0.00031356	515.3062071994221	48.197	0.95837	48.955	48.578	49.536	0.75737					47	18	4	0	0	0	0.15346	1	18040	18040		85.357	2.8274	1	84767000	+		5501	26878	3689	3734	5367	5367					0.08468834225891442
DEKLSLYGDG	10	Unmodified	_DEKLSLYGDG_					0	0	0		CAMK2N1|p.P14L|1|0.4|ENSG00000162545|chr1:20485339-20485339|G/A|missense_variant	CAMK2N1|p.P14L|1|0.4|ENSG00000162545|chr1:20485339-20485339|G/A|missense_variant	CAMK2N1|p.P14L|1|0.4|ENSG00000162545|chr1:20485339-20485339|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	549.1609497070312	2	548.761486	1095.50842	-1.0218	-0.0005607	0.28888	0.00015853	-0.73287	-0.00040217	548.7614366502809	35.343	0.50586	36.107	35.929	36.435	0.76338					12	9	2	0	0	0	0.8866	1	12843	12843		14.405	3.5815	1	2802700			5502	285	3690	3735	5368	5368					-0.035514652441406724
DEKMESRKY	9	Unmodified	_DEKMESRKY_					0	0	0			REV__ENSG00000166004|ENST00000325212|CEP295	REV__ENSG00000166004|ENST00000325212|CEP295	MSMS	A375_MHC_IP_R1	1	395.9242858886719	3	395.857134	1184.54957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.262	1	23.262	22.762	23.762	0								0	0	0	0.15411	1	6357	6357		10.151	3.9162	1		+		5503	20642	3691	3736	5369	5369					-0.035320274763080306
DEKQFFLTQF	10	Unmodified	_DEKQFFLTQF_					0	0	0			REV__ENST00000436639.6_1_6:109415456-109415594:-|nuORF	REV__ENST00000436639.6_1_6:109415456-109415594:-|nuORF	MSMS	A375_MHC_IP_R1	1	435.28228759765625	3	434.883677	1301.6292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.239	1	55.239	54.739	55.739	0								0	0	0	0.15486	1	19750	19750		5.0475	0.3316	1		+		5504	24766	3692	3737	5370	5370					-0.009546375306854316
DEKQFYSKA	9	Unmodified	_DEKQFYSKA_					0	0	0		ENSG00000148335|ENST00000372483|NTMT1;nc|ENSG00000148335|Q9BV86-2|NTMT1	ENSG00000148335|ENST00000372483|NTMT1	ENSG00000148335|ENST00000372483|NTMT1	MULTI-SECPEP	A375_MHC_IP_R1	1	372.9522705078125	3	372.517106	1114.52949	0.22725	8.4655E-05	0.22095	8.2308E-05	0.4482	0.00016696	372.5170356962053	33.114	0.45544	33.114	32.887	33.342	0					15	8	2	0	0	0	0.75164	1	10708	10708		9.544	7.6376	1	9061700			5505	5733	3693	3738	5371	5371					-0.023194551446067635
DEKRLLGRQ	9	Unmodified	_DEKRLLGRQ_					0	0	0			REV__ENST00000514102.5_1_5:176797843-176799073:+|nuORF	REV__ENST00000514102.5_1_5:176797843-176799073:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	557.1317749023438	2	557.820004	1113.62546	-0.75923	-0.00042351	1.0706	0.00059718	0.31133	0.00017367	557.820436995252	23.406	0.20485	23.406	23.278	23.483	0					5	3	2	0	0	0	0.76187	1	6396	6396		11.64	0	1	2428800	+		5506	20135	3694	3739	5372	5372					0.07318737486139071
DEKRQRRRLQ	10	Unmodified	_DEKRQRRRLQ_					0	0	0			REV__ENST00000564508.2_1_16:72460469-72460685:+|nuORF	REV__ENST00000564508.2_1_16:72460469-72460685:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	693.2978515625	2	692.89764	1383.78073	-0.85982	-0.00059577	1.5065	0.0010438	0.64663	0.00044805	692.898220556895	132.33	0.70583	132.33	131.78	132.49	0					22	13	3	0	0	0	0.94897	1	51067	51067		0.35063	0.043601	1	2697600	+		5507	26218	3695	3740	5373	5373					0.10418781340399619
DEKSKTRKKF	10	Unmodified	_DEKSKTRKKF_					0	0	0			REV__ENSG00000134007|ENST00000256389|ADAM20	REV__ENSG00000134007|ENST00000256389|ADAM20	MULTI-MSMS	A375_MHC_IP_R1	1	423.31011962890625	3	422.910338	1265.70918	0.10955	4.6332E-05	-0.34545	-0.0001461	-0.2359	-9.9763E-05	422.9101871995064	20.711	0.56202	20.711	20.435	20.997	0					17	10	3	0	0	0	0.7086	1	5387	5387		8.4443	0.49891	1	1903500	+		5508	18745	3696	3741	5374	5374					0.08695848863158062
DEKSKTRKKF	10	Unmodified	_DEKSKTRKKF_					0	0	0			REV__ENSG00000134007|ENST00000256389|ADAM20	REV__ENSG00000134007|ENST00000256389|ADAM20	MULTI-SECPEP	A375_MHC_IP_R1	1	422.13616943359375	3	422.910338	1265.70918	0.10955	4.6332E-05	-0.34545	-0.0001461	-0.2359	-9.9763E-05	422.9101871995064	20.711	0.56202	20.711	20.435	20.997	0					17	10	3	0	0	0	0.92832	1	5309	5309		8.4443	0	1	1903500	+		5509	18745	3696	3741	5375	5375					0.08695848863158062
DEKTLGDSLIY	11	Unmodified	_DEKTLGDSLIY_					0	0	0			REV__tr|U7SGJ5|U7SGJ5_FUSNUFilamentoushaemagglutininFhaB/tRNAnucleaseCdiA-likeTPSdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02209PE=4SV=1;REV__tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	REV__tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	627.7166748046875	2	627.316625	1252.6187	-0.52747	-0.00033089	0.29849	0.00018725	-0.22898	-0.00014364	627.3167200429136	96.666	0.81393	96.666	96.171	96.985	0					28	15	3	0	0	0	0.9754	1	35503	35503		12.241	5.5175	1	3038400	+		5510	28254;28185	3697	3742	5376	5376					0.0024933502425028564
DEKVEPLSF	9	Unmodified	_DEKVEPLSF_					0	0	0			REV__tr|U7T2A0|U7T2A0_FUSNUGlutamate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gltXPE=3SV=1	REV__tr|U7T2A0|U7T2A0_FUSNUGlutamate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gltXPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	531.6839599609375	2	532.268947	1062.52334	-0.99045	-0.00052719	-1.5596	-0.00083011	-2.55	-0.0013573	532.7688320341538	60.492	0.30495	61.237	61.109	61.414	0.74503					8	5	2	0	0	0	0.75466	1	22920	22920		4.3292	0	1	1052800	+		5511	28729	3698	3743	5377	5377					-0.005419733761527823
DELAQPTSI	9	Unmodified	_DELAQPTSI_					0	0	0			REV__ENST00000557184.1_1_14:54976944-54997777:+|nuORF	REV__ENST00000557184.1_1_14:54976944-54997777:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	487.6763916015625	2	487.245472	972.476391	-0.23218	-0.00011313	-0.28316	-0.00013797	-0.51535	-0.0002511	487.2452878477582	59.644	0.60937	59.644	59.346	59.955	0					20	11	2	0	0	0	0.29981	1	21398	21398		30.637	1.555	1	4203300	+		5512	17099	3699	3744	5378	5378					-0.01094832927265088
DELCRMLEY	9	Unmodified	_DELCRMLEY_					0	0	0			REV__nc|ENSG00000125450|Q9BW27-3|NUP85	REV__nc|ENSG00000125450|Q9BW27-3|NUP85	MULTI-MSMS	A375_MHC_IP_R1	1	586.6600341796875	2	586.259742	1170.50493	-0.31729	-0.00018601	0.91403	0.00053586	0.59674	0.00034985	586.2601518040315	58.337	0.61017	58.337	58.075	58.685	0					16	11	2	0	0	0	0.13797	1	20948	20948		43.858	9.4566	1	4408800	+		5513	18342	3700	3745	5379	5379					-0.07350174614020943
DELDAIGTKRF	11	Unmodified	_DELDAIGTKRF_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	A375_MHC_IP_R1	1	422.6220703125	3	422.222582	1263.64592	-0.0095263	-4.0222E-06	-0.46216	-0.00019513	-0.47169	-0.00019916	422.2223337331468	55.304	0.40593	55.304	55.025	55.431	0					11	7	2	0	0	0	0.65749	1	19772	19772		18.853	9.609	1	2652900			5514	7003	3701	3746	5380	5380					0.02463863355274043
DELEGTYKIY	10	Unmodified	_DELEGTYKIY_					0	0	0		ENSG00000107554|ENST00000324109|DNMBP;nc|ENSG00000107554|Q6XZF7-2|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	MULTI-MSMS	A375_MHC_IP_R1	1	616.1978759765625	2	615.798069	1229.58158	0.10993	6.7697E-05	-0.21405	-0.00013181	-0.10412	-6.4115E-05	615.7979326049713	69.255	0.61116	69.255	69.02	69.631	0					25	11	3	0	0	0	0.0093677	1	25135	25135		128.57	38.438	1	4537000			5515	2742	3702	3747	5381	5381					-0.02402336521504367
DELEGTYKIY	10	Unmodified	_DELEGTYKIY_					0	0	0		ENSG00000107554|ENST00000324109|DNMBP;nc|ENSG00000107554|Q6XZF7-2|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	MULTI-MSMS	A375_MHC_IP_R2	2	616.1978149414062	2	615.798069	1229.58158	-0.5116	-0.00031504	0.14066	8.6619E-05	-0.37094	-0.00022842	615.7980703773035	68.782	0.55772	69.517	69.221	69.779	0.73511					19	10	2	0	0	0	0.0019766	1	26040	26040		139.78	49.647	1	3862200			5516	2742	3702	3747	5382	5382					-0.02402336521504367
DELEIKAYY	9	Unmodified	_DELEIKAYY_					0	0	0		nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;ENST00000526904.5_1_1:1250884-1259984:-|nuORF;ENST00000526113.1_1_1:1250782-1259984:-|nuORF;ENST00000421495.6_1_1:1249445-1259984:-|nuORF;ENST00000488042.6_1_1:1250056-1259988:-|nuORF	nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	MULTI-SECPEP	A375_MHC_IP_R1	1	572.6817016601562	2	572.282054	1142.54956	-0.32842	-0.00018795	0.231	0.0001322	-0.097424	-5.5754E-05	572.2818600368887	76.937	1.0149	76.937	76.522	77.537	0					53	19	4	0	0	0	0.074405	1	28008	28008		70.332	26.474	1	11237000			5517	4074	3703	3748	5383	5383					-0.016017042046769348
DELEIKAYY	9	Unmodified	_DELEIKAYY_					0	0	0		nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;ENST00000526904.5_1_1:1250884-1259984:-|nuORF;ENST00000526113.1_1_1:1250782-1259984:-|nuORF;ENST00000421495.6_1_1:1249445-1259984:-|nuORF;ENST00000488042.6_1_1:1250056-1259988:-|nuORF	nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	MULTI-SECPEP	A375_MHC_IP_R2	2	572.681884765625	2	572.282054	1142.54956	-0.25664	-0.00014687	0.17168	9.8251E-05	-0.084954	-4.8618E-05	572.2818873032411	76.415	1.1167	77.156	76.538	77.655	0.74052					42	21	3	0	0	0	0.13208	1	28947	28947		66.457	30.33	1	8182300			5518	4074	3703	3748	5384	5384					-0.016017042046769348
DELELHQRF	9	Unmodified	_DELELHQRF_					0	0	0		nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	MULTI-MSMS	A375_MHC_IP_R1	1	396.599853515625	3	396.199889	1185.57784	-0.17514	-6.939E-05	0.312	0.00012361	0.13686	5.4225E-05	396.1999661135499	47.128	0.51568	47.128	46.85	47.366	0					21	9	3	0	0	0	0.12748	1	16556	16556		45.74	31.522	1	7001800			5519	1033	3704	3749	5385	5385					-0.007529615047360494
DELELHQRF	9	Unmodified	_DELELHQRF_					0	0	0		nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	MULTI-SECPEP	A375_MHC_IP_R1	1	594.1962890625	2	593.796195	1185.57784	-0.47744	-0.0002835	1.2658	0.00075164	0.78837	0.00046813	593.7963706676254	47.133	0.3608	47.133	46.85	47.211	0					10	6	2	0	0	0	0.4465	1	16596	16596		38.176	13.185	1	2690400			5520	1033	3704	3749	5386	5386					-0.007529615047360494
DELELHQRF	9	Unmodified	_DELELHQRF_					0	0	0		nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	MULTI-MSMS	A375_MHC_IP_R2	2	396.5996398925781	3	396.199889	1185.57784	-0.0073181	-2.8994E-06	0.21763	8.6223E-05	0.21031	8.3324E-05	396.1998543997273	46.367	0.61086	47.133	46.855	47.466	0.76519					26	11	3	0	0	0	0.068071	2	17359	17271;17359		57.249	43.031	1	5142300			5521	1033	3704	3749	5387;5388	5388					-0.007529615047360494
DELELHQRF	9	Unmodified	_DELELHQRF_					0	0	0		nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	MULTI-SECPEP	A375_MHC_IP_R2	2	594.1958618164062	2	593.796195	1185.57784	-0.45314	-0.00026907	1.2635	0.00075024	0.81033	0.00048117	593.7963031531506	46.367	0.3047	47.133	46.957	47.262	0.76519					10	5	2	0	0	0	0.61452	1	17401	17401		26.268	11.863	1	2422500			5522	1033	3704	3749	5389	5389					-0.007529615047360494
DELERFTSMR	10	Unmodified	_DELERFTSMR_					0	0	0		ENSG00000131504|ENST00000389054|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	MULTI-MSMS	A375_MHC_IP_R1	1	642.2048950195312	2	642.306069	1282.59759	-0.74634	-0.00047938	1.0498	0.00067428	0.30344	0.0001949	642.3065576739522	23.368	0.25562	23.368	23.278	23.533	0					5	4	2	0	0	0	0.71466	1	6434	6434		5.7319	0.83484	1	2737200			5523	4337	3705	3750	5390	5390					-0.032409535562692326
DELESTNRRY	10	Unmodified	_DELESTNRRY_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	A375_MHC_IP_R1	1	642.2037963867188	2	641.804748	1281.59494	-0.28792	-0.00018479	-0.52261	-0.00033542	-0.81053	-0.0005202	641.8044268645971	21.58	0.30366	21.58	21.403	21.706	0					18	5	4	0	0	0	0.023568	1	5678	5678		83.429	61.892	1	19510000			5524	1197	3706	3751	5391	5391					-0.03459085689564745
DELESTNRRY	10	Unmodified	_DELESTNRRY_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-SECPEP	A375_MHC_IP_R1	1	428.6055603027344	3	428.205591	1281.59494	-0.31878	-0.0001365	0.4714	0.00020186	0.15262	6.5355E-05	428.2054597088242	23.355	0.61248	23.355	23.125	23.737	0					18	11	3	0	0	0	0.65827	1	6420	6420		27.088	27.088	1	12174000			5525	1197	3706	3751	5392	5392					-0.03459085689564745
DELESTNRRY	10	Unmodified	_DELESTNRRY_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	A375_MHC_IP_R2	2	642.203857421875	2	641.804748	1281.59494	-1.0545	-0.00067679	-0.1707	-0.00010956	-1.2252	-0.00078635	641.804758372937	20.448	0.86401	21.059	20.6	21.464	0.61029					40	16	3	0	0	0	0.38709	2	6273	6273;6336		34.932	18.783	1	4877800			5526	1197	3706	3751	5393;5394	5393					-0.03459085689564745
DELESTNRRY	10	Unmodified	_DELESTNRRY_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	A375_MHC_IP_R2	2	428.85107421875	3	428.205591	1281.59494	-0.52457	-0.00022463	-0.023033	-9.8629E-06	-0.54761	-0.00023449	428.2055559803128	20.454	0.8126	21.064	20.549	21.362	0.61029					49	15	4	0	0	0	0.21617	2	6419	6419;6437		35.08	20.909	1	10332000			5527	1197	3706	3751	5395;5396	5395					-0.03459085689564745
DELESTNRRY	10	Unmodified	_DELESTNRRY_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	A375_MHC_IP_R2	2	642.2041625976562	2	641.804748	1281.59494	-1.0769	-0.00069118	0.57753	0.00037066	-0.49941	-0.00032052	641.8048561614285	22.967	0.25497	23.597	23.42	23.675	0.63014					9	4	3	0	0	0	0.5761	1	7349	7349		22.658	7.4096	1	3580700			5528	1197	3706	3751	5397	5397					-0.03459085689564745
DELESTNRRY	10	Unmodified	_DELESTNRRY_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-SECPEP	A375_MHC_IP_R2	2	428.60546875	3	428.205591	1281.59494	-0.54603	-0.00023381	0.18667	7.9934E-05	-0.35935	-0.00015388	428.20558480272325	22.967	0.40843	23.597	23.368	23.777	0.63014					16	7	3	0	0	0	0.76274	1	7339	7339		25.997	25.997	1	9782500			5529	1197	3706	3751	5398	5398					-0.03459085689564745
DELFLTETGW	10	Unmodified	_DELFLTETGW_					0	0	0		ENST00000333050.6_1_16:8890049-8890097:-|nuORF	ENST00000333050.6_1_16:8890049-8890097:-|nuORF	ENST00000333050.6_1_16:8890049-8890097:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	606.6871948242188	2	605.784961	1209.55537	-0.14461	-8.7602E-05	0.85225	0.00051628	0.70764	0.00042868	605.785442820506	42.72	0.4555	42.72	42.487	42.942	0					22	8	3	0	0	0	0.6502	1	14833	14833		17.113	4.0704	1	2776100			5530	10782	3707	3752	5399	5399					-0.041026056930149934
DELGEEEEF	9	Unmodified	_DELGEEEEF_					0	0	0			REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF	REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	549.1197509765625	2	548.719484	1095.42441	-0.27818	-0.00015264	0.62998	0.00034568	0.3518	0.00019304	548.7200117216402	108.63	0.65856	108.63	108.31	108.97	0					19	12	3	0	0	0	0.64808	1	39866	39866		11.64	3.047	1	1951000	+		5531	18488	3708	3753	5400	5400					-0.11948041131699938
DELGLQKKL	9	Unmodified	_DELGLQKKL_					0	0	0		ENSG00000103549|ENST00000324685|RNF40;nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;nc|ENSG00000103549|O75150-4|RNF40	ENSG00000103549|ENST00000324685|RNF40	ENSG00000103549|ENST00000324685|RNF40	MULTI-SECPEP	A375_MHC_IP_R1	1	522.7081909179688	2	522.308406	1042.60226	-0.41752	-0.00021807	-0.25218	-0.00013172	-0.6697	-0.00034979	522.3082303497299	40.681	0.60683	40.681	40.406	41.013	0					25	11	3	0	0	0	0.0575	1	13982	13982		76.825	42.423	1	15243000			5532	2462	3709	3754	5401	5401					0.08266298648823067
DELGLQKKL	9	Unmodified	_DELGLQKKL_					0	0	0		ENSG00000103549|ENST00000324685|RNF40;nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;nc|ENSG00000103549|O75150-4|RNF40	ENSG00000103549|ENST00000324685|RNF40	ENSG00000103549|ENST00000324685|RNF40	MULTI-SECPEP	A375_MHC_IP_R2	2	522.708251953125	2	522.308406	1042.60226	-0.62905	-0.00032856	-0.30376	-0.00015865	-0.93281	-0.00048721	522.3082377739893	39.879	0.50771	40.654	40.422	40.93	0.77451					21	9	3	0	0	0	0.062502	1	14737	14737		74.2	39.268	1	11441000			5533	2462	3709	3754	5402	5402					0.08266298648823067
DELHQRTMWRR	11	Unmodified	_DELHQRTMWRR_					0	0	0		ENSG00000135116|ENST00000257572|HRK	ENSG00000135116|ENST00000257572|HRK	ENSG00000135116|ENST00000257572|HRK	MSMS	A375_MHC_IP_R2	2	509.9590148925781	3	509.924764	1526.75246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.853	1	22.472	21.972	22.972	0.61932								0	0	0	0.16353	1	6909	6909		0.094841	0	1				5534	4648	3710	3755	5403	5403					0.0101571536879419
DELKDVYNHF	10	Unmodified	_DELKDVYNHF_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H;ENST00000577939.1_1_17:27008175-27009006:+|nuORF	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	A375_MHC_IP_R1	1	640.700927734375	2	640.30131	1278.58807	-0.53648	-0.00034351	0.25949	0.00016615	-0.27698	-0.00017735	640.301463904672	63.095	0.51182	63.095	62.762	63.274	0					16	9	2	0	0	0	0.077755	1	22769	22769		77.049	49.825	1	2966900			5535	2857	3711	3756	5404	5404					-0.040083985701585334
DELKDVYNHF	10	Unmodified	_DELKDVYNHF_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H;ENST00000577939.1_1_17:27008175-27009006:+|nuORF	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-SECPEP	A375_MHC_IP_R1	1	427.9372253417969	3	427.203299	1278.58807	-0.048647	-2.0782E-05	0.35051	0.00014974	0.30186	0.00012896	427.20343324721324	63.078	0.66597	63.078	62.711	63.377	0					30	12	3	0	0	0	0.08679	1	22756	22756		84.738	55.457	1	3981400			5536	2857	3711	3756	5405	5405					-0.040083985701585334
DELKDVYNHF	10	Unmodified	_DELKDVYNHF_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H;ENST00000577939.1_1_17:27008175-27009006:+|nuORF	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	A375_MHC_IP_R2	2	427.60284423828125	3	427.203299	1278.58807	-0.29088	-0.00012426	-0.12275	-5.2439E-05	-0.41363	-0.0001767	427.2032161546404	62.453	0.60999	63.196	62.874	63.484	0.74263					29	11	4	0	0	0	0.040521	1	23646	23646		78.61	58.624	1	4108600			5537	2857	3711	3756	5406	5406					-0.040083985701585334
DELKDVYNHF	10	Unmodified	_DELKDVYNHF_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H;ENST00000577939.1_1_17:27008175-27009006:+|nuORF	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	A375_MHC_IP_R2	2	640.6998291015625	2	640.30131	1278.58807	-0.85187	-0.00054545	-0.0297	-1.9017E-05	-0.88157	-0.00056447	640.3011787460756	62.462	0.45821	63.205	62.925	63.383	0.74263					14	8	2	0	0	0	0.077755	1	23653	23653		77.049	49.825	1	3553400			5538	2857	3711	3756	5407	5407					-0.040083985701585334
DELKIPIRSW	10	Unmodified	_DELKIPIRSW_					0	0	0		SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant;ENSG00000101310|ENST00000650089|SEC23B	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	419.9709167480469	3	419.571434	1255.69247	0.12053	5.0573E-05	-0.19063	-7.9981E-05	-0.070092	-2.9408E-05	419.571254673676	83.235	0.55917	83.235	83.024	83.583	0					30	10	4	0	0	0	0.11158	1	30427	30427		61.165	48.937	1	8233200			5539	2280	3712	3757	5408	5408					0.07485347977217316
DELKIPIRSW	10	Unmodified	_DELKIPIRSW_					0	0	0		SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant;ENSG00000101310|ENST00000650089|SEC23B	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	629.2529907226562	2	628.853512	1255.69247	-0.60894	-0.00038294	3.8272	0.0024067	3.2183	0.0020238	629.8617134015327	83.251	1.3669	83.251	82.571	83.937	0					45	26	3	0	0	0	0.77998	1	30485	30485		23.801	12.306	1	5613600			5540	2280	3712	3757	5409	5409					0.07485347977217316
DELKIPIRSW	10	Unmodified	_DELKIPIRSW_					0	0	0		SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant;ENSG00000101310|ENST00000650089|SEC23B	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	419.97149658203125	3	419.571434	1255.69247	-0.10099	-4.2372E-05	-0.14532	-6.097E-05	-0.2463	-0.00010334	419.57138114737126	82.561	0.55573	83.304	82.992	83.547	0.74294					28	10	4	0	0	0	0.11158	1	31327	31327		61.165	48.937	1	6071900			5541	2280	3712	3757	5410	5410					0.07485347977217316
DELLFEVKDP	10	Unmodified	_DELLFEVKDP_					0	0	0		POLN|p.E810K|1|0.33|ENSG00000130997|chr4:2075479-2075479|C/T|missense_variant	POLN|p.E810K|1|0.33|ENSG00000130997|chr4:2075479-2075479|C/T|missense_variant	POLN|p.E810K|1|0.33|ENSG00000130997|chr4:2075479-2075479|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	603.7293701171875	2	602.808436	1203.60232	-0.83321	-0.00050227	1.0791	0.00065049	0.24589	0.00014822	602.8091005433972	38.481	0.71269	39.255	38.895	39.607	0.77451					36	13	4	0	0	0	0.70329	1	14146	14146		10.824	0.024421	1	4068400			5542	15205	3713	3758	5411	5411					0.008662538581575063
DELLHIYGST	10	Unmodified	_DELLHIYGST_					0	0	0		nc|ENSG00000146426|Q8IVF5-4|TIAM2;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2	nc|ENSG00000146426|Q8IVF5-4|TIAM2	nc|ENSG00000146426|Q8IVF5-4|TIAM2	MULTI-SECPEP	A375_MHC_IP_R1	1	573.6951904296875	2	574.285128	1146.5557	-0.44513	-0.00025563	0.062039	3.5628E-05	-0.38309	-0.00022	574.2852869698835	66.709	0.30679	66.709	66.478	66.785	0					7	5	2	0	0	0	0.72086	1	24128	24128		30.637	11.38	1	694980			5543	5623	3714	3759	5412	5412					-0.01171185973134925
DELQDNFREFY	11	Unmodified	_DELQDNFREFY_					0	0	0		nc|ENSG00000150712|Q9C0I1-2|MTMR12;ENSG00000150712|ENST00000382142|MTMR12;nc|ENSG00000150712|Q9C0I1-3|MTMR12	nc|ENSG00000150712|Q9C0I1-2|MTMR12	nc|ENSG00000150712|Q9C0I1-2|MTMR12	MSMS	A375_MHC_IP_R1	1	492.4510498046875	3	492.552768	1474.63647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.656	1	28.656	28.156	29.156	0								0	0	0	0.1624	1	8872	8872		6.2344	0	1				5544	5858	3715	3760	5413	5413					-0.08185949720905228
DELQIPVKW	9	Unmodified	_DELQIPVKW_					0	0	0		ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	MULTI-MSMS	A375_MHC_IP_R1	1	564.708984375	2	564.308406	1126.60226	-0.26126	-0.00014743	0.351	0.00019807	0.089739	5.0641E-05	564.3086564682898	106.14	0.41003	106.14	105.96	106.37	0					11	7	2	0	0	0	0.082375	1	38987	38987		53.833	31.097	1	1552900			5545	1133	3716	3761	5414	5414					0.04402298648801661
DELRHSKM	8	Unmodified	_DELRHSKM_					0	0	0			REV__nc|ENSG00000114923|P48751-3|SLC4A3	REV__nc|ENSG00000114923|P48751-3|SLC4A3	MULTI-SECPEP	A375_MHC_IP_R1	1	1015.986328125	1	1015.49894	1014.49166	-0.14041	-0.00014259	1.9762	0.0020068	1.8358	0.0018643	1015.5033384794722	121.23	0.25321	121.23	121.06	121.31	0					5	4	2	0	0	0	0.972	1	45034	45034		7.2892	0	1	14541000	+		5546	17847	3717	3762	5415	5415					-0.01500244611065682
DELRKRIKGLH	11	Unmodified	_DELRKRIKGLH_					0	0	0			REV__nc|ENSG00000147689|Q86UY5-2|FAM83A	REV__nc|ENSG00000147689|Q86UY5-2|FAM83A	MSMS	A375_MHC_IP_R1	1	682.6302490234375	2	682.909685	1363.80482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.898	1	94.898	94.398	95.398	0								0	0	0	0.16331	1	34880	34880		1.4819	0	1		+		5547	19605	3718	3763	5416	5416					0.13746621774066625
DELRLDKNYL	10	Unmodified	_DELRLDKNYL_					0	0	0			REV__PDE7B|p.H299Y|1|0.33|ENSG00000171408|chr6:136179088-136179088|C/T|missense_variant	REV__PDE7B|p.H299Y|1|0.33|ENSG00000171408|chr6:136179088-136179088|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	427.628662109375	3	426.894465	1277.66157	-0.45343	-0.00019357	-0.14456	-6.1713E-05	-0.598	-0.00025528	427.22869088667596	57.854	0.50401	58.603	58.375	58.879	0.74894					19	9	3	0	0	0	0.67512	1	21909	21909		13.519	0	1	2154400	+		5548	27757	3719	3764	5417	5417					0.033841498723404584
DELRREYYEVQ	11	Unmodified	_DELRREYYEVQ_					0	0	0		GRP|p.E92V|1|0.34|ENSG00000165623|chr18:59225627-59225627|A/T|missense_variant	GRP|p.E92V|1|0.34|ENSG00000165623|chr18:59225627-59225627|A/T|missense_variant	GRP|p.E92V|1|0.34|ENSG00000165623|chr18:59225627-59225627|A/T|missense_variant	MSMS	A375_MHC_IP_R1	1	500.4749755859375	3	500.575684	1498.70522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.529	1	73.529	73.029	74.029	0								0	0	0	0.16258	1	26774	26774		2.4348	1.1051	1				5549	14092	3720	3765	5418	5418					-0.024182854211858285
DELRREYYEVQ	11	Unmodified	_DELRREYYEVQ_					0	0	0		GRP|p.E92V|1|0.34|ENSG00000165623|chr18:59225627-59225627|A/T|missense_variant	GRP|p.E92V|1|0.34|ENSG00000165623|chr18:59225627-59225627|A/T|missense_variant	GRP|p.E92V|1|0.34|ENSG00000165623|chr18:59225627-59225627|A/T|missense_variant	MSMS	A375_MHC_IP_R1	1	500.6712951660156	3	500.575684	1498.70522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.247	1	81.247	80.747	81.747	0								0	0	0	0.15694	1	29688	29688		9.2438	4.8376	1				5550	14092	3720	3765	5419	5419					-0.024182854211858285
DELRREYYEVQ	11	Unmodified	_DELRREYYEVQ_					0	0	0		GRP|p.E92V|1|0.34|ENSG00000165623|chr18:59225627-59225627|A/T|missense_variant	GRP|p.E92V|1|0.34|ENSG00000165623|chr18:59225627-59225627|A/T|missense_variant	GRP|p.E92V|1|0.34|ENSG00000165623|chr18:59225627-59225627|A/T|missense_variant	MSMS	A375_MHC_IP_R2	2	500.474853515625	3	500.575684	1498.70522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.188	1	85.924	85.424	86.424	0.73601								0	0	0	0.16265	1	32384	32384		2.2527	0.92309	1				5551	14092	3720	3765	5420	5420					-0.024182854211858285
DELSILEGY	9	Unmodified	_DELSILEGY_					0	0	0			REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	1038.899169921875	1	1038.49898	1037.49171	0.19382	0.00020128	-0.13798	-0.0001433	0.055832	5.7982E-05	1038.4991329678503	98.501	0.81348	98.501	98.101	98.914	0					33	15	3	0	0	0	0.3607	1	36328	36328		42.095	0	1	6938700	+		5552	15465	3721	3766	5421	5421					-0.025539661300626904
DELSLQVAD	9	Unmodified	_DELSLQVAD_					0	0	0		ENSG00000114790|ENST00000465093|ARHGEF26	ENSG00000114790|ENST00000465093|ARHGEF26	ENSG00000114790|ENST00000465093|ARHGEF26	MULTI-SECPEP	A375_MHC_IP_R1	1	494.6664123535156	2	495.242929	988.471305	0.085958	4.257E-05	-0.47531	-0.00023539	-0.38935	-0.00019282	495.24252536764243	44.954	0.90873	44.954	44.676	45.585	0					41	17	3	0	0	0	0.38578	1	15667	15667		34.402	6.7729	1	6398900			5553	3246	3722	3767	5422	5422					-0.023391367898966564
DELSPNWHM	9	Unmodified	_DELSPNWHM_					0	0	0			REV__ENSG00000116830|ENST00000369466|TTF2	REV__ENSG00000116830|ENST00000369466|TTF2	MULTI-MSMS	A375_MHC_IP_R1	1	564.6826782226562	2	564.742573	1127.47059	-0.28519	-0.00016106	-0.038591	-2.1794E-05	-0.32378	-0.00018285	564.7424607837696	56.342	0.60857	56.342	56.041	56.65	0					27	11	3	0	0	0	0.27715	3	20203	20093;20157;20203		32.305	32.305	1	8233600	+		5554	17975	3723	3768	5423;5424;5425	5425					-0.0880425471059425
DELSPNWHM	9	Unmodified	_DELSPNWHM_					0	0	0			REV__ENSG00000116830|ENST00000369466|TTF2	REV__ENSG00000116830|ENST00000369466|TTF2	MULTI-MSMS	A375_MHC_IP_R2	2	565.1907348632812	2	564.742573	1127.47059	-0.56619	-0.00031975	-0.27759	-0.00015677	-0.84378	-0.00047652	564.7424587936958	55.674	0.61036	56.424	56.135	56.745	0.75062					27	11	3	0	0	0	0.17328	4	20986	20964;20986;21016;21055		39.957	39.957	1	8540200	+		5555	17975	3723	3768	5426;5427;5428;5429	5427					-0.0880425471059425
DELSPNWHM	9	Unmodified	_DELSPNWHM_					0	0	0			REV__ENSG00000116830|ENST00000369466|TTF2	REV__ENSG00000116830|ENST00000369466|TTF2	MULTI-SECPEP	A375_MHC_IP_R2	2	564.71337890625	2	564.742573	1127.47059	-0.56619	-0.00031975	-0.27759	-0.00015677	-0.84378	-0.00047652	564.7424587936958	55.674	0.61036	56.424	56.135	56.745	0.75062					27	11	3	0	0	0	0.50702	1	21055	21055		25.399	25.399	1	8540200	+		5556	17975	3723	3768	5430	5430					-0.0880425471059425
DELSPNWHM	9	Unmodified	_DELSPNWHM_					0	0	0			REV__ENSG00000116830|ENST00000369466|TTF2	REV__ENSG00000116830|ENST00000369466|TTF2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	564.742573	1127.47059	-0.28519	-0.00016106	-0.038591	-2.1794E-05	-0.32378	-0.00018285	564.7424607837696	56.342	0.60857	56.342	56.041	56.65	0	-0.041194	0.00013179	NaN	39.957	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8233600	+		5557	17975	3723	3768							-0.0880425471059425
DELYKEEKI	9	Unmodified	_DELYKEEKI_					0	0	0		ENST00000525971.6_1_12:85431954-85518298:+|nuORF;ENSG00000133640|ENST00000393217|LRRIQ1	ENST00000525971.6_1_12:85431954-85518298:+|nuORF	ENST00000525971.6_1_12:85431954-85518298:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	584.2000122070312	2	583.800611	1165.58667	-0.64299	-0.00037538	-0.55109	-0.00032172	-1.1941	-0.0006971	583.8001812248489	37.705	0.71984	38.479	38.175	38.895	0.77451					34	13	4	0	0	0	0.53748	1	13814	13814		18.146	0	1	11155000			5558	4519	3724	3769	5431	5431					0.010499673411004551
DELYYYINVQR	11	Unmodified	_DELYYYINVQR_					0	0	0			REV__nc|ENSG00000096093|Q5JVL4-3|EFHC1	REV__nc|ENSG00000096093|Q5JVL4-3|EFHC1	MSMS	A375_MHC_IP_R1	1	492.4777526855469	3	492.577025	1474.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.5	1	37.5	37	38	0								0	0	0	0.16297	1	12648	12648		1.3296	0.11481	1		+		5559	17006	3725	3770	5432	5432					-0.009121959275034897
DEMEEDDDDSD	11	Unmodified	_DEMEEDDDDSD_					0	0	0		nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	MSMS	A375_MHC_IP_R1	1	657.6906127929688	2	657.693534	1313.37252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.79	1	110.79	110.29	111.29	0								0	0	0	0.16353	1	40618	40618		0.35063	0.35063	1				5560	7623	3726	3771	5433	5433					-0.2716361739842341
DEMEFYSDDL	10	Unmodified	_DEMEFYSDDL_					0	0	0			REV__ENST00000515849.2_1_5:114726056-114726176:-|nuORF	REV__ENST00000515849.2_1_5:114726056-114726176:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1263.8663330078125	1	1263.47218	1262.4649	0.45695	0.00057734	-3.7775	-0.0047728	-3.3206	-0.0041954	1263.467554504742	114.58	0.45661	114.58	114.46	114.92	0					10	8	2	0	0	0	0.93799	1	42100	42100		3.5965	0	1	5936500	+		5561	25665	3727	3772	5434	5434					-0.15583442803585967
DEMLSSHT	8	Unmodified	_DEMLSSHT_					0	0	0		ENSG00000174446|ENST00000316634|SNAPC5	ENSG00000174446|ENST00000316634|SNAPC5	ENSG00000174446|ENST00000316634|SNAPC5	MULTI-SECPEP	A375_MHC_IP_R2	2	919.7828979492188	1	919.382573	918.375297	-0.2091	-0.00019224	-0.10625	-9.7685E-05	-0.31535	-0.00028993	919.382785759542	117.61	0.30385	118.21	118.04	118.34	0.60909					7	5	2	0	0	0	0.97144	1	44533	44533		14.582	6.6715	1	9850800			5562	7880	3728	3773	5435	5435					-0.08715607901649491
DEMNAALR	8	Unmodified	_DEMNAALR_					0	0	0			REV__LAMB4|p.N1301Mfs*46|1|0.33|ENSG00000091128|chr7:108052113-108052113|A/-|frameshift_variant	REV__LAMB4|p.N1301Mfs*46|1|0.33|ENSG00000091128|chr7:108052113-108052113|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	918.774169921875	1	919.430192	918.422915	-0.17515	-0.00016104	0.50044	0.00046012	0.32529	0.00029909	919.4314911484545	116.46	1.728	117.12	116.51	118.24	0.65962					60	33	2	0	0	0	0.97144	1	44352	44352		14.582	0	1	325950000	+		5563	16943	3729	3774	5436	5436					-0.03955908910791095
DEMNAALR	8	Unmodified	_DEMNAALR_					0	0	0			REV__LAMB4|p.N1301Mfs*46|1|0.33|ENSG00000091128|chr7:108052113-108052113|A/-|frameshift_variant	REV__LAMB4|p.N1301Mfs*46|1|0.33|ENSG00000091128|chr7:108052113-108052113|A/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R1	1		1	919.430192	918.422915	0.12813	0.0001178	-0.18942	-0.00017416	-0.061292	-5.6354E-05	919.4313359658913	117.33	2.2337	117.33	116.04	118.27	0	0.10573	-0.00032037	NaN	14.582	74	43	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327710000	+		5564	16943	3729	3774							-0.03955908910791095
DEMNYEYF	8	Unmodified	_DEMNYEYF_					0	0	0			REV__tr|U7T5R8|U7T5R8_FUSNUMalonicsemialdehydereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00059PE=3SV=1	REV__tr|U7T5R8|U7T5R8_FUSNUMalonicsemialdehydereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00059PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1688232421875	2	555.707865	1109.40118	-0.6987	-0.00038827	3.6258	0.0020149	2.9271	0.0016266	556.2117942089347	84.093	0.2052	84.833	84.663	84.868	0.73962					5	3	2	0	0	0	0.97144	1	31931	31931		9.3474	6.0661	1	913520	+		5565	28835	3730	3775	5437	5437					-0.14914758450026966
DEMQAKAERS	10	Unmodified	_DEMQAKAERS_					0	0	0			REV__nc|ENSG00000069431|O60706|ABCC9	REV__nc|ENSG00000069431|O60706|ABCC9	MSMS	A375_MHC_IP_R1	1	582.6795043945312	2	582.769319	1163.52409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.071	1	42.071	41.571	42.571	0								0	0	0	0.15136	1	14560	14560		15.248	3.0078	1		+		5566	16558	3731	3776	5438	5438					-0.05113501998744141
DEMSQDIVKY	10	Oxidation (M)	_DEM(Oxidation (M))SQDIVKY_		DEM(1)SQDIVKY		DEM(51)SQDIVKY	0	0	1		ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	A375_MHC_IP_R1	1	622.1907958984375	2	622.279186	1242.54382	-0.15556	-9.6804E-05	1.2031	0.00074869	1.0476	0.00065188	622.2792384801417	44.497	0.61521	44.497	44.061	44.676	0					19	11	2	0	0	0	0.17808	1	15421	15421		51.488	34.375	1	2849600			5567	5699	3732	3777	5439	5439		303			-0.06775170778632855
DEMSQDIVKY	10	Oxidation (M)	_DEM(Oxidation (M))SQDIVKY_		DEM(1)SQDIVKY		DEM(67)SQDIVKY	0	0	1		ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	A375_MHC_IP_R2	2	622.6788330078125	2	622.279186	1242.54382	-0.53835	-0.00033501	-0.44452	-0.00027662	-0.98287	-0.00061162	622.2791544623101	43.869	0.65537	44.638	44.228	44.883	0.7691					19	12	3	0	0	0	0.084058	1	16403	16403		67.081	49.968	1	2215600			5568	5699	3732	3777	5440	5440		303			-0.06775170778632855
DEMSQDIVKY	10	Unmodified	_DEMSQDIVKY_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	A375_MHC_IP_R1	1	614.6818237304688	2	614.281728	1226.5489	-0.37103	-0.00022792	0.15876	9.7523E-05	-0.21227	-0.00013039	614.2818682355013	61.013	0.45656	61.013	60.719	61.176	0					14	8	2	0	0	0	0.011522	1	21987	21987		117.84	88.756	1	2347400			5569	5699	3732	3778	5441	5441					-0.05530866916024024
DEMSQDIVKY	10	Unmodified	_DEMSQDIVKY_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	A375_MHC_IP_R2	2	614.6809692382812	2	614.281728	1226.5489	-0.88063	-0.00054096	0.049231	3.0242E-05	-0.8314	-0.00051071	614.2818478478566	60.409	0.56063	61.154	60.903	61.464	0.74503					16	10	2	0	0	0	0.0019766	1	22893	22893		139.78	92.033	1	2545600			5570	5699	3732	3778	5442	5442					-0.05530866916024024
DEMTQRNNRHH	11	Unmodified	_DEMTQRNNRHH_					0	0	0			REV__nc|ENSG00000165304|Q14680-3|MELK	REV__nc|ENSG00000165304|Q14680-3|MELK	MULTI-MSMS	A375_MHC_IP_R2	2	480.2840270996094	3	479.884857	1436.63274	-0.62754	-0.00030115	-0.75858	-0.00036403	-1.3861	-0.00066518	479.88441006693347	27.11	0.35849	27.788	27.587	27.945	0.67857					11	6	2	0	0	0	0.73658	1	9270	9270		2.6312	1.3016	1	4635100	+		5571	20572	3733	3779	5443	5443					-0.06810897975765329
DEMVSLKDY	9	Unmodified	_DEMVSLKDY_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000530115.1_1_11:27910903-27911533:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	A375_MHC_IP_R1	1	550.7451171875	2	550.25244	1098.49033	-0.48222	-0.00026534	0.81801	0.00045011	0.33579	0.00018477	550.2528528136585	63.313	0.51112	63.313	62.966	63.477	0					14	9	2	0	0	0	0.3489	1	22868	22868		27.223	4.487	1	1744800			5572	1722	3734	3780	5444	5444					-0.05497923490497669
DEMVSLKDY	9	Unmodified	_DEMVSLKDY_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000530115.1_1_11:27910903-27911533:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	A375_MHC_IP_R2	2	550.6519775390625	2	550.25244	1098.49033	-0.82271	-0.0004527	-0.82492	-0.00045391	-1.6476	-0.00090661	550.2525041870582	62.646	0.35362	63.389	63.18	63.534	0.74263					12	6	3	0	0	0	0.4875	1	23792	23792		20.415	7.3721	1	1343300			5573	1722	3734	3780	5445	5445					-0.05497923490497669
DENCQINRY	9	Unmodified	_DENCQINRY_					0	0	0		ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB	ENSG00000136235|ENST00000258733|GPNMB	ENSG00000136235|ENST00000258733|GPNMB	MULTI-MSMS	A375_MHC_IP_R1	1	578.6696166992188	2	577.748387	1153.48222	-0.18779	-0.00010849	-0.67563	-0.00039034	-0.86341	-0.00049884	577.7479144781415	57.711	0.96404	57.711	57.313	58.278	0					43	18	3	0	0	0	0.69674	1	20822	20822		7.2892	0.56607	1	10476000			5574	4767	3735	3781	5446	5446					-0.08838057687262335
DENDDDCLL	9	Unmodified	_DENDDDCLL_					0	0	0			REV__ENSG00000277058|ENST00000617807|HNRNPCL3	REV__ENSG00000277058|ENST00000617807|HNRNPCL3	MSMS	A375_MHC_IP_R1	1	526.1983642578125	2	526.197861	1050.38117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.75	1	136.75	136.25	137.25	0								0	0	0	0.15486	1	52664	52664		5.2307	0.47466	1		+		5575	21563	3736	3782	5447	5447					-0.14200554180638392
DENEGRFDY	9	Unmodified	_DENEGRFDY_					0	0	0			REV__nc|ENSG00000109686|Q5HYK7-5|SH3D19	REV__nc|ENSG00000109686|Q5HYK7-5|SH3D19	MULTI-SECPEP	A375_MHC_IP_R2	2	573.1299438476562	2	572.730717	1143.44688	-0.18574	-0.00010638	-0.47175	-0.00027019	-0.65749	-0.00037657	572.7303879324602	63.97	0.66164	64.71	64.292	64.954	0.74022					16	12	2	0	0	0	0.76827	1	24277	24277		10.824	8.7642	1	1505100	+		5576	17591	3737	3783	5448	5448					-0.11910396943426349
DENEHQLSL	9	Unmodified	_DENEHQLSL_					0	0	0		ENST00000436123.1_1_3:24138699-24138891:-|nuORF;ENST00000513394.1_1_8:57014234-57014760:-|nuORF;ENST00000523339.1_1_5:170814874-170817152:+|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1	ENST00000436123.1_1_3:24138699-24138891:-|nuORF	ENST00000436123.1_1_3:24138699-24138891:-|nuORF	MSMS	A375_MHC_IP_R1	1	542.7050170898438	2	542.74891	1083.48327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.321	1	46.321	45.821	46.821	0								0	0	0	0.00086276	1	16245	16245		100.09	37.518	1				5577	8336	3738	3784	5449	5449					-0.055135200467020695
DENEHQLSL	9	Unmodified	_DENEHQLSL_					0	0	0		ENST00000436123.1_1_3:24138699-24138891:-|nuORF;ENST00000513394.1_1_8:57014234-57014760:-|nuORF;ENST00000523339.1_1_5:170814874-170817152:+|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1	ENST00000436123.1_1_3:24138699-24138891:-|nuORF	ENST00000436123.1_1_3:24138699-24138891:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	543.1482543945312	2	542.74891	1083.48327	-0.85904	-0.00046624	0.090721	4.9239E-05	-0.76832	-0.000417	542.748938526591	45.462	0.70601	46.227	45.897	46.603	0.76519					26	13	2	0	0	0	0.017727	3	16933	16888;16933;16957		86.332	29.559	1	28557000			5578	8336	3738	3784	5450;5451;5452	5451					-0.055135200467020695
DENEHVYAV	9	Unmodified	_DENEHVYAV_					0	0	0			REV__tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1;REV__tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1;REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	539.6453857421875	2	538.238178	1074.4618	-1.2332	-0.00066377	1.3361	0.00071917	0.10292	5.5395E-05	538.2382167519016	26.499	0.76301	27.159	26.857	27.62	0.65992					39	14	4	0	0	0	0.64808	1	8915	8915		11.64	3.047	1	21921000	+		5579	28281;28869;28777	3739	3785	5453	5453					-0.07244905075435781
DENELHVTY	9	Unmodified	_DENELHVTY_					0	0	0			REV__SEC14L5|p.P118L|1|0.38|ENSG00000103184|chr16:4990774-4990774|C/T|missense_variant	REV__SEC14L5|p.P118L|1|0.38|ENSG00000103184|chr16:4990774-4990774|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	559.708740234375	2	560.251286	1118.48802	-0.47445	-0.00026581	-0.16657	-9.332E-05	-0.64102	-0.00035913	560.2511372484232	25.043	0.50509	25.043	24.852	25.357	0					17	9	2	0	0	0	0.75466	1	7363	7363		7.9102	0	1	6053600	+		5580	27931	3740	3786	5454	5454					-0.06648635903934519
DENENKIEF	9	Unmodified	_DENENKIEF_					0	0	0		ENSG00000136636|ENST00000259154|KCTD3;nc|ENSG00000136636|Q9Y597-2|KCTD3;nc|ENSG00000136636|Q9Y597-3|KCTD3	ENSG00000136636|ENST00000259154|KCTD3	ENSG00000136636|ENST00000259154|KCTD3	MULTI-MSMS	A375_MHC_IP_R1	1	569.6751098632812	2	569.256568	1136.49858	-0.2595	-0.00014772	1.2328	0.00070178	0.9733	0.00055406	569.759252703665	51.069	0.35445	51.069	50.814	51.168	0					9	6	2	0	0	0	0.14659	1	18099	18099		42.312	5.8063	1	858690			5581	4804	3741	3787	5455	5455					-0.06420653249506358
DENEPLEFVE	10	Unmodified	_DENEPLEFVE_					0	0	0			REV__nc|ENSG00000158528|Q9ULJ8|PPP1R9A	REV__nc|ENSG00000158528|Q9ULJ8|PPP1R9A	MULTI-MSMS	A375_MHC_IP_R2	2	611.6901245117188	2	610.769508	1219.52446	-0.78106	-0.00047705	-0.26934	-0.00016451	-1.0504	-0.00064155	610.7690574870529	49.479	0.75974	50.236	49.894	50.653	0.75737					33	14	3	0	0	0	0.52785	1	18661	18661		26.268	7.0112	1	10093000	+		5582	20082	3742	3788	5456	5456					-0.07651803797921275
DENEPLEFVE	10	Unmodified	_DENEPLEFVE_					0	0	0			REV__nc|ENSG00000158528|Q9ULJ8|PPP1R9A	REV__nc|ENSG00000158528|Q9ULJ8|PPP1R9A	MULTI-MATCH	A375_MHC_IP_R1	1		2	610.769508	1219.52446	-0.2475	-0.00015117	-0.64818	-0.00039589	-0.89568	-0.00054705	610.7688664569713	50.048	0.91951	50.048	49.642	50.561	0	-0.093972	-0.00021565	NaN	26.268	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8368400	+		5583	20082	3742	3788							-0.07651803797921275
DENETDSIW	9	Unmodified	_DENETDSIW_					0	0	0		COBL|p.G1077E|1|0.07|ENSG00000106078|chr7:51027866-51027866|C/T|missense_variant	COBL|p.G1077E|1|0.07|ENSG00000106078|chr7:51027866-51027866|C/T|missense_variant	COBL|p.G1077E|1|0.07|ENSG00000106078|chr7:51027866-51027866|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	554.6580200195312	2	554.725101	1107.43565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.08	1	58.08	57.58	58.58	0								0	0	0	0.15486	1	20856	20856		8.5933	0.68312	1				5584	554	3743	3789	5457	5457					-0.11377219037558461
DENGDIQNINE	11	Unmodified	_DENGDIQNINE_					0	0	0		tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1	tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1	tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1	MSMS	A375_MHC_IP_R2	2	420.9153747558594	3	420.849473	1259.52659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.502	1	24.132	23.632	24.632	0.63014								0	0	0	0.16275	1	7574	7574		4.4062	2.4998	1				5585	29710	3744	3790	5458	5458					-0.09279375060077655
DENGFKCH	8	Unmodified	_DENGFKCH_					0	0	0		nc|ENSG00000151657|O60870-2|KIN;ENSG00000151657|ENST00000379562|KIN	nc|ENSG00000151657|O60870-2|KIN	nc|ENSG00000151657|O60870-2|KIN	MSMS	A375_MHC_IP_R1	1	475.15069580078125	2	475.195259	948.375965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.992	1	24.992	24.492	25.492	0								0	0	0	0.16876	1	7208	7208		10.183	0.83596	1				5586	5917	3745	3791	5459	5459					-0.10028768461927484
DENIKSFIW	9	Unmodified	_DENIKSFIW_					0	0	0		CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7	CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant	CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	576.6922607421875	2	576.290214	1150.56587	0.040962	2.3606E-05	0.26983	0.0001555	0.31079	0.00017911	576.2907929574008	106.85	0.8179	106.85	106.68	107.49	0					18	15	2	0	0	0	0.39434	1	39211	39211		24.991	9.1438	1	1826000			5587	387	3746	3792	5460	5460					-0.0033857824791994062
DENIKSFIW	9	Unmodified	_DENIKSFIW_					0	0	0		CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7	CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant	CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	575.904541015625	2	576.290214	1150.56587	-0.2043	-0.00011774	0.43506	0.00025072	0.23076	0.00013298	576.2908992837523	106.24	0.30466	107	106.78	107.09	0.75977					8	5	2	0	0	0	0.63622	1	40125	40125		24.991	14.167	1	1312600			5588	387	3746	3792	5461	5461					-0.0033857824791994062
DENINVLDLY	10	Unmodified	_DENINVLDLY_					0	0	0		ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	MULTI-MSMS	A375_MHC_IP_R2	2	605.0613403320312	2	604.295693	1206.57683	-0.51059	-0.00030855	-0.074354	-4.4932E-05	-0.58494	-0.00035348	604.2955345890459	72.757	1.0189	73.493	73.073	74.091	0.73541					59	19	4	0	0	0	0.70329	1	27457	27457		10.824	5.0921	1	27305000			5589	7859	3747	3793	5462	5462					-0.018192206642879682
DENKLFKSQ	9	Unmodified	_DENKLFKSQ_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1;ENST00000554306.1_1_14:56122841-56128351:+|nuORF	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	A375_MHC_IP_R1	1	555.1851196289062	2	554.785296	1107.55604	-0.97421	-0.00054048	0.70944	0.00039359	-0.26477	-0.00014689	554.7856554276954	29.175	0.45797	29.175	28.945	29.403	0					13	8	2	0	0	0	0.22013	1	9086	9086		36.506	0.37917	1	15307000			5590	4058	3748	3794	5463	5463					0.006562337467130419
DENLGSVKQY	10	Unmodified	_DENLGSVKQY_					0	0	0		ENSG00000126107|ENST00000372172|HECTD3	ENSG00000126107|ENST00000372172|HECTD3	ENSG00000126107|ENST00000372172|HECTD3	MULTI-SECPEP	A375_MHC_IP_R1	1	577.1805419921875	2	576.78021	1151.54587	0.0079801	4.6028E-06	-0.44017	-0.00025388	-0.43219	-0.00024928	576.7801612249234	37.456	0.35775	37.456	37.301	37.658	0					17	6	4	0	0	0	0.016155	1	12653	12653		111.31	40.977	1	3442100			5591	4026	3749	3795	5464	5464					-0.023843739784979334
DENLGSVKQY	10	Unmodified	_DENLGSVKQY_					0	0	0		ENSG00000126107|ENST00000372172|HECTD3	ENSG00000126107|ENST00000372172|HECTD3	ENSG00000126107|ENST00000372172|HECTD3	MULTI-SECPEP	A375_MHC_IP_R2	2	577.1799926757812	2	576.78021	1151.54587	-0.74791	-0.00043138	0.56649	0.00032674	-0.18142	-0.00010464	576.780504101442	36.879	0.45737	37.65	37.359	37.816	0.7709					15	8	3	0	0	0	0.028865	1	13477	13477		103.82	33.492	1	4658600			5592	4026	3749	3795	5465	5465					-0.023843739784979334
DENPGLQLI	9	Unmodified	_DENPGLQLI_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	A375_MHC_IP_R1	1	500.1610412597656	2	499.761289	997.508025	-0.23882	-0.00011935	-0.33918	-0.00016951	-0.578	-0.00028886	499.7612481857708	110.75	0.56129	110.75	110.39	110.95	0					17	10	2	0	0	0	0.27742	1	40637	40637		51.63	17.228	1	1330000			5593	9866	3750	3796	5466	5466					0.00917159826678926
DENPGLQLI	9	Unmodified	_DENPGLQLI_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	A375_MHC_IP_R2	2	500.1609191894531	2	499.761289	997.508025	-0.41101	-0.00020541	-0.18634	-9.3126E-05	-0.59735	-0.00029853	499.761112305114	110	0.56229	110.74	110.43	110.99	0.73981					15	10	2	0	0	0	0.061442	1	41532	41532		72.968	25.219	1	1454200			5594	9866	3750	3796	5467	5467					0.00917159826678926
DENPNANLL	9	Unmodified	_DENPNANLL_					0	0	0		ENST00000586690.1_1_19:55748009-55750864:-|nuORF;ENSG00000105063|ENST00000412770|PPP6R1	ENST00000586690.1_1_19:55748009-55750864:-|nuORF	ENST00000586690.1_1_19:55748009-55750864:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	500.640380859375	2	500.240721	998.466889	-0.78842	-0.0003944	0.68274	0.00034153	-0.10569	-5.2868E-05	500.2410957179171	68.009	0.55605	68.009	67.754	68.31	0					17	10	2	0	0	0	0.32092	1	24724	24724		29.082	8.628	1	2102800			5595	2566	3751	3797	5468	5468					-0.0324060121280354
DENPYVAKL	9	Unmodified	_DENPYVAKL_					0	0	0		ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6905517578125	2	524.769114	1047.52368	-0.50844	-0.00026681	1.2511	0.00065654	0.74266	0.00038973	524.7690749827779	57.935	0.71003	57.935	57.618	58.328	0					27	13	3	0	0	0	0.59098	1	20846	20846		27.629	10.687	1	2392600			5596	1820	3752	3798	5469	5469					0.001814463437312952
DENPYVAKL	9	Unmodified	_DENPYVAKL_					0	0	0		ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	MSMS	A375_MHC_IP_R2	2	524.690673828125	2	524.769114	1047.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.198	1	57.948	57.448	58.448	0.75004								0	0	0	0.1493	1	21625	21625		22.736	9.2284	1				5597	1820	3752	3798	5470	5470					0.001814463437312952
DENSAFLQF	9	Unmodified	_DENSAFLQF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	A375_MHC_IP_R1	1	536.1422729492188	2	535.743096	1069.47164	-1.2076	-0.00064696	-0.50563	-0.00027089	-1.7132	-0.00091785	535.7428649253932	124.02	0.5536	124.02	123.69	124.24	0					15	10	2	0	0	0	0.0098085	1	46498	46498		114.2	69.795	1	25053000			5598	9183	3753	3799	5471	5471					-0.06031717070072773
DENSAFLQF	9	Unmodified	_DENSAFLQF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	A375_MHC_IP_R2	2	536.14306640625	2	535.743096	1069.47164	-0.83358	-0.00044659	-0.16825	-9.0141E-05	-1.0018	-0.00053673	535.74294414659	123.33	0.6049	123.71	123.48	124.09	0.3766					18	11	2	0	0	0	0.007896	1	47406	47406		129.77	66.209	1	17627000			5599	9183	3753	3799	5472	5472					-0.06031717070072773
DENSLEYKYY	10	Unmodified	_DENSLEYKYY_					0	0	0		ENST00000598240.1_1_19:19105804-19136912:-|nuORF;nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2	ENST00000598240.1_1_19:19105804-19136912:-|nuORF	ENST00000598240.1_1_19:19105804-19136912:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	662.6900024414062	2	662.290608	1322.56666	-0.57367	-0.00037993	-0.067825	-4.492E-05	-0.64149	-0.00042485	662.2904791565264	59.007	0.50879	59.007	58.736	59.245	0					23	9	3	0	0	0	3.2662E-05	1	21183	21183		177.58	126.16	1	7371400			5600	1354	3754	3800	5473	5473					-0.08171828389527036
DENSLEYKYY	10	Unmodified	_DENSLEYKYY_					0	0	0		ENST00000598240.1_1_19:19105804-19136912:-|nuORF;nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2	ENST00000598240.1_1_19:19105804-19136912:-|nuORF	ENST00000598240.1_1_19:19105804-19136912:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	662.6901245117188	2	662.290608	1322.56666	-1.1873	-0.00078636	0.021711	1.4379E-05	-1.1656	-0.00077198	662.2906353772876	58.457	0.56181	59.206	58.929	59.491	0.74894					32	10	4	0	0	0	1.4138E-05	1	22106	22106		190.03	146.05	1	6111400			5601	1354	3754	3800	5474	5474					-0.08171828389527036
DENSNQSF	8	Unmodified	_DENSNQSF_					0	0	0		ENSG00000099385|ENST00000215115|BCL7C;nc|ENSG00000099385|Q8WUZ0-2|BCL7C	ENSG00000099385|ENST00000215115|BCL7C	ENSG00000099385|ENST00000215115|BCL7C	MULTI-SECPEP	A375_MHC_IP_R2	2	471.0850830078125	2	470.685778	939.357004	-0.54013	-0.00025423	-0.62904	-0.00029608	-1.1692	-0.00055031	470.68540440796335	63.421	0.61002	64.161	63.835	64.446	0.74022					28	11	3	0	0	0	0.97144	1	24003	24003		2.3027	0	1	3858100			5602	2077	3755	3801	5475	5475					-0.11510026551991359
DENSVIKSF	9	Unmodified	_DENSVIKSF_					0	0	0		ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	A375_MHC_IP_R1	1	1039.4627685546875	1	1038.51022	1037.50294	0.1203	0.00012493	-0.28586	-0.00029687	-0.16556	-0.00017193	1038.5098426839	61.143	0.61121	61.143	60.821	61.432	0					25	11	3	0	0	0	0.058715	1	21999	21999		60.899	20.66	1	10333000			5603	4293	3756	3802	5476	5476					-0.014311440359506378
DENSVIKSF	9	Unmodified	_DENSVIKSF_					0	0	0		ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-SECPEP	A375_MHC_IP_R1	1	520.18994140625	2	519.758746	1037.50294	-0.55337	-0.00028762	0.18589	9.6616E-05	-0.36749	-0.000191	519.7588874131229	61.15	2.0896	61.15	60.159	62.249	0					121	40	6	0	0	0	1.9351E-08	1	22011	22011		179.28	90.33	1	170590000			5604	4293	3756	3802	5477	5477					-0.014311440359506378
DENSVIKSF	9	Unmodified	_DENSVIKSF_					0	0	0		ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MATCH	A375_MHC_IP_R2	2		1	1038.51022	1037.50294	-0.25739	-0.0002673	-0.38441	-0.00039922	-0.6418	-0.00066652	1038.5097681582859	60.403	0.61143	61.148	60.853	61.464	0.74503	0.0022536	-4.9184E-05	NaN	60.899	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9052100			5605	4293	3756	3802							-0.014311440359506378
DENWYGIK	8	Unmodified	_DENWYGIK_					0	0	0			REV__nc|ENSG00000155511|P42261-3|GRIA1	REV__nc|ENSG00000155511|P42261-3|GRIA1	MULTI-SECPEP	A375_MHC_IP_R2	2	1024.1795654296875	1	1024.47344	1023.46616	0.22222	0.00022766	3.0357	0.00311	3.2579	0.0033376	1024.4778223239425	111.76	1.1287	112.48	111.74	112.87	0.72459					30	21	2	0	0	0	0.95423	1	41957	41957		12.532	5.2423	1	4282300	+		5606	19926	3757	3803	5478	5478					-0.044633958618419456
DEPCNHPDPV	10	Unmodified	_DEPCNHPDPV_					0	0	0			REV__ENST00000463909.1_1_22:21349904-21350666:+|nuORF	REV__ENST00000463909.1_1_22:21349904-21350666:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	561.4796142578125	2	561.729663	1121.44477	-0.5479	-0.00030777	-1.1378	-0.00063913	-1.6857	-0.0009469	562.2317677316072	83.507	0.20596	84.246	84.099	84.305	0.73962					5	3	2	0	0	0	0.9269	1	31706	31706		6.7232	4.4204	1	505760	+		5607	25004	3758	3804	5479	5479					-0.11109148952868964
DEPDILYKR	9	Unmodified	_DEPDILYKR_					0	0	0		ENSG00000048544|ENST00000053468|MRPS10	ENSG00000048544|ENST00000053468|MRPS10	ENSG00000048544|ENST00000053468|MRPS10	MULTI-SECPEP	A375_MHC_IP_R1	1	383.62420654296875	3	383.536389	1147.58734	-0.032563	-1.2489E-05	0.9111	0.00034944	0.87854	0.00033695	383.5359872364705	30.338	0.60588	30.338	30.2	30.806	0					12	7	2	0	0	0	0.71541	1	9809	9809		11.495	0.6952	1	2087900			5608	1215	3759	3805	5480	5480					0.019448067808070846
DEPERARARW	10	Unmodified	_DEPERARARW_					0	0	0			REV__ENST00000393841.5_1_6:44191398-44193833:+|nuORF	REV__ENST00000393841.5_1_6:44191398-44193833:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	428.60546875	3	429.218054	1284.63233	-0.53116	-0.00022798	0.18678	8.0171E-05	-0.34438	-0.00014781	429.2180405581218	20.256	1.5729	20.866	19.892	21.464	0.61029					45	30	3	0	0	0	0.85074	1	6278	6278		23.801	3.8142	1	2280300	+		5609	24298	3760	3806	5481	5481					0.0014005036669004767
DEPEVGEKCLE	11	Unmodified	_DEPEVGEKCLE_					0	0	0			REV__SGK2|p.G179E|1|0.47|ENSG00000101049|chr20:43569512-43569512|G/A|missense_variant	REV__SGK2|p.G179E|1|0.47|ENSG00000101049|chr20:43569512-43569512|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	624.635986328125	2	624.276643	1246.53873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.347	1	62.092	61.592	62.592	0.74503								0	0	0	0.16203	1	23249	23249		8.1555	1.4324	1		+		5610	27952	3761	3807	5482	5482					-0.0746747464127111
DEPFRKEIY	9	Unmodified	_DEPFRKEIY_					0	0	0			REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	A375_MHC_IP_R1	1	399.9361572265625	3	399.536389	1195.58734	-0.21709	-8.6735E-05	0.48494	0.00019375	0.26785	0.00010702	399.53631137793496	25.216	0.50877	25.216	25.053	25.562	0					25	9	4	0	0	0	0.65721	1	7337	7337		10.8	0.64894	1	7872900	+		5611	22186	3762	3808	5483	5483					-0.0026319321918890637
DEPISYMQH	9	Unmodified	_DEPISYMQH_					0	0	0			REV__nc|ENSG00000106633|P35557-3|GCK	REV__nc|ENSG00000106633|P35557-3|GCK	MULTI-SECPEP	A375_MHC_IP_R1	1	559.6615600585938	2	560.242406	1118.47026	-0.31298	-0.00017535	-1.2757	-0.00071469	-1.5887	-0.00089004	560.2415417898146	42.681	1.6743	42.681	42.285	43.959	0					52	32	2	0	0	0	0.4261	1	14903	14903		37.974	1.847	1	2916400	+		5612	17458	3763	3809	5484	5484					-0.08423674430446226
DEPIVFSENY	10	Unmodified	_DEPIVFSENY_					0	0	0			REV__nc|ENSG00000088727|Q9HAQ2-2|KIF9	REV__nc|ENSG00000088727|Q9HAQ2-2|KIF9	MULTI-SECPEP	A375_MHC_IP_R2	2	607.17431640625	2	606.774593	1211.53463	-0.71159	-0.00043178	0.10132	6.1477E-05	-0.61028	-0.0003703	606.7745560085467	61.029	0.45266	61.774	61.618	62.07	0.74503					17	8	3	0	0	0	0.93194	1	23167	23167		5.7319	5.7319	1	2367700	+		5613	16887	3764	3810	5485	5485					-0.06267196072644765
DEPIVFSENY	10	Unmodified	_DEPIVFSENY_					0	0	0			REV__nc|ENSG00000088727|Q9HAQ2-2|KIF9	REV__nc|ENSG00000088727|Q9HAQ2-2|KIF9	MULTI-MATCH	A375_MHC_IP_R1	1		2	606.774593	1211.53463	-0.32125	-0.00019493	0.81231	0.00049289	0.49106	0.00029796	606.7754136473588	61.683	0.56115	61.683	61.382	61.943	0	-0.04556	0.00066031	NaN	5.7319	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2208000	+		5614	16887	3764	3810							-0.06267196072644765
DEPLEIFHND	10	Unmodified	_DEPLEIFHND_					0	0	0			REV__nc|ENSG00000184014|Q6IQ26-2|DENND5A	REV__nc|ENSG00000184014|Q6IQ26-2|DENND5A	MULTI-SECPEP	A375_MHC_IP_R1	1	615.1776733398438	2	614.777667	1227.54078	-0.30593	-0.00018808	-0.087947	-5.4068E-05	-0.39388	-0.00024215	614.7775079384783	57.32	0.61055	57.32	57.007	57.618	0					17	11	2	0	0	0	0.83355	1	20558	20558		17.113	0	1	3756100	+		5615	21792	3765	3811	5486	5486					-0.06388677841141543
DEPLGRAAQRV	11	Unmodified	_DEPLGRAAQRV_					0	0	0		ENST00000560148.5_2_15:74510872-74513593:+|nuORF;nc|ENSG00000140481|Q8N5R6|CCDC33;nc|ENSG00000140481|Q8N5R6-2|CCDC33	ENST00000560148.5_2_15:74510872-74513593:+|nuORF	ENST00000560148.5_2_15:74510872-74513593:+|nuORF	MSMS	A375_MHC_IP_R2	2	404.5907287597656	3	404.554554	1210.64183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.642	1	21.253	20.753	21.753	0.61029								0	0	0	0.16203	1	6443	6443		4.1166	0.27072	1				5616	13486	3766	3812	5487	5487					0.04493818652213122
DEPSAFSALSY	11	Unmodified	_DEPSAFSALSY_					0	0	0		tr|U7T616|U7T616_FUSNUBranched-chainaminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00058PE=3SV=1	tr|U7T616|U7T616_FUSNUBranched-chainaminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00058PE=3SV=1	tr|U7T616|U7T616_FUSNUBranched-chainaminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00058PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	593.6907348632812	2	593.766768	1185.51898	-0.44476	-0.00026408	0.19421	0.00011532	-0.25055	-0.00014877	593.7668334372013	58.809	0.71272	58.809	58.43	59.143	0					39	13	4	0	0	0	0.36362	1	21140	21140		41.84	12.758	1	12192000			5617	30040	3767	3813	5488	5488					-0.06635482589717867
DEPSAFSALSY	11	Unmodified	_DEPSAFSALSY_					0	0	0		tr|U7T616|U7T616_FUSNUBranched-chainaminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00058PE=3SV=1	tr|U7T616|U7T616_FUSNUBranched-chainaminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00058PE=3SV=1	tr|U7T616|U7T616_FUSNUBranched-chainaminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00058PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	593.6906127929688	2	593.766768	1185.51898	-0.84731	-0.00050311	0.25139	0.00014926	-0.59593	-0.00035384	593.7668336128057	58.19	0.6588	58.938	58.578	59.237	0.74894					29	12	3	0	0	0	0.36362	1	22006	22006		41.84	12.758	1	11353000			5618	30040	3767	3813	5489	5489					-0.06635482589717867
DEPTVKLFQN	10	Unmodified	_DEPTVKLFQN_					0	0	0			REV__ENSG00000157613|ENST00000621158|CREB3L1	REV__ENSG00000157613|ENST00000621158|CREB3L1	MULTI-MSMS	A375_MHC_IP_R1	1	397.5900573730469	3	397.539911	1189.5979	-0.40784	-0.00016213	0.1715	6.8177E-05	-0.23634	-9.3955E-05	397.87325133861356	23.736	0.40657	23.736	23.584	23.991	0					10	7	2	0	0	0	0.70012	1	6573	6573		7.4771	0	1	766690	+		5619	20036	3768	3814	5490	5490					0.010687894352258809
DEQDKEGFI	9	Unmodified	_DEQDKEGFI_					0	0	0			REV__nc|ENSG00000215474|Q2VWA4-2|SKOR2	REV__nc|ENSG00000215474|Q2VWA4-2|SKOR2	MULTI-MSMS	A375_MHC_IP_R1	1	540.6659545898438	2	540.745836	1079.47712	-0.82921	-0.00044839	-0.85092	-0.00046013	-1.6801	-0.00090852	540.7456537164635	66.403	0.56079	66.403	66.173	66.734	0					16	10	2	0	0	0	0.4867	1	24104	24104		20.454	2.3186	1	1176100	+		5620	27496	3769	3815	5491	5491					-0.05944038278221342
DEQEHEFY	8	Unmodified	_DEQEHEFY_					0	0	0		ENSG00000013275|ENST00000157812|PSMC4;nc|ENSG00000013275|P43686-2|PSMC4;ENST00000593455.5_1_19:40486165-40487209:+|nuORF	ENSG00000013275|ENST00000157812|PSMC4	ENSG00000013275|ENST00000157812|PSMC4	MULTI-MSMS	A375_MHC_IP_R2	2	550.1657104492188	2	548.714536	1095.41452	-0.8602	-0.000472	0.15398	8.4494E-05	-0.70622	-0.00038751	548.7146222520291	39.419	1.4746	40.194	39.607	41.082	0.77451					82	28	4	0	0	0	0.77515	2	14632	14632;14847		12.532	0.90143	1	110390000			5621	1016	3770	3816	5492;5493	5492					-0.12937184346424146
DEQELQEF	8	Unmodified	_DEQELQEF_					0	0	0		DSTYK|p.I268F|1|0.48|ENSG00000133059|chr1:205169685-205169685|T/A|missense_variant	DSTYK|p.I268F|1|0.48|ENSG00000133059|chr1:205169685-205169685|T/A|missense_variant	DSTYK|p.I268F|1|0.48|ENSG00000133059|chr1:205169685-205169685|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	519.9859008789062	2	519.224736	1036.43492	-0.65268	-0.00033889	0.068739	3.5691E-05	-0.58394	-0.0003032	519.2247096414299	62.966	0.60596	63.708	63.383	63.989	0.74263					25	11	3	0	0	0	0.93661	1	23768	23768		15.847	3.6065	1	3484200			5622	808	3771	3817	5494	5494					-0.08184013686604885
DEQHDNKL	8	Unmodified	_DEQHDNKL_					0	0	0			REV__ENST00000471105.5_1_1:201965436-201974841:+|nuORF	REV__ENST00000471105.5_1_1:201965436-201974841:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	499.2407531738281	2	499.73052	997.446488	-0.70656	-0.00035309	1.3854	0.00069233	0.67885	0.00033924	499.73107278719897	26.431	0.45651	26.431	26.271	26.728	0					12	8	2	0	0	0	0.972	1	7988	7988		2.5775	2.0527	1	1883400	+		5623	21402	3772	3818	5495	5495					-0.05233771872622128
DEQKSMQTL	9	Unmodified	_DEQKSMQTL_					0	0	0		nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16;nc|ENSG00000041515|Q9Y6X6-4|MYO16;ENST00000375857.6_1_13:109445985-109707944:+|nuORF;nc|ENSG00000041515|Q9Y6X6-3|MYO16;nc|ENSG00000041515|Q9Y6X6-2|MYO16	nc|ENSG00000041515|Q9Y6X6|MYO16	nc|ENSG00000041515|Q9Y6X6|MYO16	MSMS	A375_MHC_IP_R2	2	540.37548828125	2	540.255514	1078.49647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.48	1	97.236	96.736	97.736	0.75586								0	0	0	0.15486	1	36631	36631		12.532	0	1				5624	1169	3773	3819	5496	5496					-0.03963405258969033
DEQLLYSFN	9	Unmodified	_DEQLLYSFN_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	A375_MHC_IP_R1	1	1128.5919189453125	1	1128.52078	1127.5135	0.21358	0.00024103	2.4029	0.0027117	2.6165	0.0029527	1128.5258997278363	106.19	0.46129	106.19	105.96	106.42	0					9	8	2	0	0	0	0.74157	1	39034	39034		3.2813	0	1	1557800			5625	9113	3774	3820	5497	5497					-0.045151613815278324
DEQNPHMGEIA	11	Unmodified	_DEQNPHMGEIA_					0	0	0			REV__nc|ENSG00000138760|Q14108-2|SCARB2	REV__nc|ENSG00000138760|Q14108-2|SCARB2	MULTI-MSMS	A375_MHC_IP_R2	2	620.2418212890625	2	620.766777	1239.519	-0.50051	-0.0003107	-1.1676	-0.0007248	-1.6681	-0.0010355	620.7664906790892	112.9	1.7357	113.63	112.3	114.04	0.72459					42	32	2	0	0	0	0.72728	1	42404	42404		11.495	2.7493	1	8498800	+		5626	19119	3775	3821	5498	5498					-0.09117805861342276
DEQPCSTDSY	10	Unmodified	_DEQPCSTDSY_					0	0	0			REV__ENSG00000105229|ENST00000262971|PIAS4	REV__ENSG00000105229|ENST00000262971|PIAS4	MSMS	A375_MHC_IP_R1	1	572.6571655273438	2	572.708593	1143.40263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.489	1	69.489	68.989	69.989	0								0	0	0	0.15417	1	25217	25217		7.2892	2.5332	1		+		5627	17363	3776	3822	5499	5499					-0.16333169151903348
DEQRQVRSEG	10	Unmodified	_DEQRQVRSEG_					0	0	0			REV__chr17:81824390-81833238|98|10.42|0.23|5.48|-|0|MCRIP1,MCRIP1|1	REV__chr17:81824390-81833238|98|10.42|0.23|5.48|-|0|MCRIP1,MCRIP1|1	MULTI-MSMS	A375_MHC_IP_R1	1	602.6889038085938	2	602.289265	1202.56398	-0.51576	-0.00031063	0.0032811	1.9762E-06	-0.51248	-0.00030866	602.2891047476274	19.446	0.25331	19.446	19.318	19.571	0					7	4	2	0	0	0	0.70651	1	4865	4865		9.3831	1.7742	1	4407100	+		5628	15727	3777	3823	5500	5500					-0.029202390038108206
DEQTPIHISW	10	Unmodified	_DEQTPIHISW_					0	0	0		ENSG00000100526|ENST00000335183|CDKN3	ENSG00000100526|ENST00000335183|CDKN3	ENSG00000100526|ENST00000335183|CDKN3	MSMS	A375_MHC_IP_R2	2	613.6958618164062	2	613.296027	1224.5775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.214	1	94.959	94.459	95.459	0.74474								0	0	0	0.0011688	1	35807	35807		93.938	64.857	1				5629	2189	3778	3824	5501	5501					-0.02580381224561279
DEQVEEPEHV	10	Unmodified	_DEQVEEPEHV_					0	0	0			REV__nc|ENSG00000130595|P45378|TNNT3	REV__nc|ENSG00000130595|P45378|TNNT3	MULTI-MSMS	A375_MHC_IP_R1	1	606.1658325195312	2	605.764757	1209.51496	-0.37924	-0.00022973	1.3562	0.00082153	0.97695	0.0005918	605.7658246469091	42.029	0.35484	42.029	41.828	42.183	0					13	6	3	0	0	0	0.66308	1	14571	14571		16.149	0.90062	1	2218200	+		5630	27220	3779	3825	5502	5502					-0.08141572083422943
DEQWQFVF	8	Unmodified	_DEQWQFVF_					0	0	0			REV__ENSG00000182986|ENST00000682928|ZNF320	REV__ENSG00000182986|ENST00000682928|ZNF320	MSMS	A375_MHC_IP_R1	1	549.67236328125	2	549.748182	1097.48181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.829	1	66.829	66.329	67.329	0								0	0	0	0.16876	1	24212	24212		14.582	1.0738	1		+		5631	21724	3780	3826	5503	5503					-0.06303109344821678
DERCLGMVER	10	Unmodified	_DERCLGMVER_					0	0	0			REV__ENSG00000163635|ENST00000674280|ATXN7	REV__ENSG00000163635|ENST00000674280|ATXN7	MSMS	A375_MHC_IP_R2	2	402.92095947265625	3	403.190119	1206.54853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.036	1	38.811	38.311	39.311	0.77451								0	0	0	0.15407	1	13965	13965		4.4062	2.3222	1		+		5632	20391	3781	3827	5504	5504					-0.04648565116872305
DERHDNYVLF	10	Unmodified	_DERHDNYVLF_					0	0	0		ENSG00000023287|ENST00000025008|RB1CC1;nc|ENSG00000023287|Q8TDY2-2|RB1CC1;ENST00000522957.1_1_8:53536344-53555381:-|nuORF	ENSG00000023287|ENST00000025008|RB1CC1	ENSG00000023287|ENST00000025008|RB1CC1	MULTI-SECPEP	A375_MHC_IP_R2	2	654.6564331054688	2	654.304384	1306.59421	-1.3003	-0.00085079	-1.6687	-0.0010918	-2.969	-0.0019426	654.3037639558647	53.732	0.51448	54.483	54.198	54.712	0.75105					34	9	5	0	0	0	0.93405	1	20318	20318		8.7454	2.5396	1	19814000			5633	1075	3782	3828	5505	5505					-0.04681880338625888
DERKLNIKTYT	11	Unmodified	_DERKLNIKTYT_					0	0	0			REV__ENSG00000151838|ENST00000537690|CCDC175	REV__ENSG00000151838|ENST00000537690|CCDC175	MULTI-SECPEP	A375_MHC_IP_R1	1	461.1451416015625	3	460.920903	1379.74088	-0.29741	-0.00013708	-0.14991	-6.9096E-05	-0.44732	-0.00020618	460.92079649078494	34.328	0.25128	34.328	34.154	34.405	0					6	4	2	0	0	0	1.0007	1	11309	11309		2.2527	2.2527	1	1545400	+		5634	19779	3783	3829	5506	5506					0.06619796826475977
DERLDSGGYTK	11	Unmodified	_DERLDSGGYTK_					0	0	0			REV__VSIG2|p.E276K|1|0.15|ENSG00000019102|chr11:124748415-124748415|C/T|missense_variant	REV__VSIG2|p.E276K|1|0.15|ENSG00000019102|chr11:124748415-124748415|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	621.1771240234375	2	620.793849	1239.57314	-0.92094	-0.00057171	3.5211	0.0021859	2.6001	0.0016141	620.7957826090218	37.957	0.30927	38.732	38.534	38.843	0.77451					9	5	2	0	0	0	0.9574	1	13887	13887		19.362	3.5148	1	1023300	+		5635	28986	3784	3830	5507	5507					-0.037058904381410684
DERQLGDP	8	Unmodified	_DERQLGDP_					0	0	0		nc|ENSG00000120690|P32519-2|ELF1;ENSG00000120690|ENST00000239882|ELF1	nc|ENSG00000120690|P32519-2|ELF1	nc|ENSG00000120690|P32519-2|ELF1	MULTI-SECPEP	A375_MHC_IP_R1	1	929.2012939453125	1	929.4323	928.425024	0.29023	0.00026975	0.84879	0.00078889	1.139	0.0010586	929.4325537859008	116.07	0.35555	116.07	115.83	116.19	0					9	6	2	0	0	0	0.97144	1	42492	42492		5.2307	0.47466	1	2285400			5636	3677	3785	3831	5508	5508					-0.0420515690133243
DERQRMLVQR	10	Unmodified	_DERQRMLVQR_					0	0	0		ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	MULTI-SECPEP	A375_MHC_IP_R2	2	443.67926025390625	3	444.23846	1329.69355	-0.37668	-0.00016734	-0.38302	-0.00017015	-0.75969	-0.00033749	444.2380860205108	64.849	0.40737	65.587	65.359	65.766	0.73811					16	7	3	0	0	0	0.93578	1	24531	24531		5.7834	3.3486	1	1653000			5637	6374	3786	3832	5509	5509					0.041892390744578734
DERQRQEE	8	Unmodified	_DERQRQEE_					0	0	0			REV__nc|ENSG00000184368|Q96T17-5|MAP7D2	REV__nc|ENSG00000184368|Q96T17-5|MAP7D2	MULTI-MSMS	A375_MHC_IP_R2	2	546.211669921875	2	545.249609	1088.48466	-1.036	-0.00056488	0.31811	0.00017345	-0.71789	-0.00039143	545.2497017215197	35.403	0.65774	36.166	35.829	36.486	0.76338					29	12	3	0	0	0	0.77562	1	12887	12887		10.824	0.024421	1	4578600	+		5638	21812	3787	3833	5510	5510					-0.056038859579530254
DERQSKESH	9	Unmodified	_DERQSKESH_					0	0	0			REV__ENSG00000089199|ENST00000378961|CHGB	REV__ENSG00000089199|ENST00000378961|CHGB	MULTI-SECPEP	A375_MHC_IP_R2	2	557.6637573242188	2	558.257434	1114.50031	-0.78055	-0.00043575	1.591	0.00088817	0.81043	0.00045243	558.2574982549694	40.202	0.25357	40.977	40.879	41.133	0.77451					5	4	2	0	0	0	0.76827	1	14916	14916		10.824	4.1008	1	487910	+		5639	16908	3788	3834	5511	5511					-0.052355994408799233
DERREVIHL	9	Unmodified	_DERREVIHL_					0	0	0			REV__tr|U7STY0|U7STY0_FUSNU4-hydroxybutyryl-CoAdehydratase/vinylacetyl-CoA-Delta-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01228PE=4SV=1	REV__tr|U7STY0|U7STY0_FUSNU4-hydroxybutyryl-CoAdehydratase/vinylacetyl-CoA-Delta-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01228PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	389.58306884765625	3	389.5474	1165.62037	-0.61334	-0.00023892	-0.15149	-5.9013E-05	-0.76483	-0.00029794	389.88118269650755	25.611	0.65945	26.27	26.044	26.703	0.65992					20	12	2	0	0	0	0.73363	1	8760	8760		4.1895	0	1	4245800	+		5640	28517	3789	3835	5512	5512					0.04418433623527562
DERRIDKFTPF	11	Unmodified	_DERRIDKFTPF_					0	0	0			REV__nc|ENSG00000058729|Q9BVS4-2|RIOK2	REV__nc|ENSG00000058729|Q9BVS4-2|RIOK2	MSMS	A375_MHC_IP_R2	2	712.3721923828125	2	712.370058	1422.72556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.64	1	101.4	100.9	101.9	0.76278								0	0	0	0.16265	1	38157	38157		4.897	1.9018	1		+		5641	27107	3790	3836	5513	5513					0.031109300292655462
DERSLQRWSTW	11	Unmodified	_DERSLQRWSTW_					0	0	0			REV__ENST00000401642.7_1_4:54218857-54231404:-|nuORF	REV__ENST00000401642.7_1_4:54218857-54231404:-|nuORF	MSMS	A375_MHC_IP_R1	1	488.46978759765625	3	488.572385	1462.69533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.848	1	57.848	57.348	58.348	0								0	0	0	0.16269	1	20766	20766		4.7159	0.30977	1		+		5642	24409	3791	3837	5514	5514					-0.017514286359073594
DESDDINL	8	Unmodified	_DESDDINL_					0	0	0			REV__tr|U7T4T7|U7T4T7_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00548PE=3SV=1	REV__tr|U7T4T7|U7T4T7_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00548PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	920.8712768554688	1	920.384347	919.377071	-0.18564	-0.00017086	-1.7852	-0.0016431	-1.9708	-0.0018139	920.3848211204265	117.18	0.30627	117.84	117.58	117.89	0.65962					7	5	2	0	0	0	0.92636	1	44297	44297		11.64	3.047	1	1893500	+		5643	28804	3792	3838	5515	5515					-0.08584275612042802
DESDNSEVP	9	Unmodified	_DESDNSEVP_					0	0	0			REV__nc|ENSG00000106536|P78424-2|POU6F2	REV__nc|ENSG00000106536|P78424-2|POU6F2	MSMS	A375_MHC_IP_R1	1	496.1296081542969	2	496.196176	990.377799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.861	1	58.861	58.361	59.361	0								0	0	0	0.1521	1	21154	21154		18.135	3.2967	1		+		5644	17454	3793	3839	5516	5516					-0.1177748096298501
DESDSWSVY	9	Unmodified	_DESDSWSVY_					0	0	0			REV__nc|ENSG00000100697|Q9UPY3-2|DICER1	REV__nc|ENSG00000100697|Q9UPY3-2|DICER1	MSMS	A375_MHC_IP_R1	1	544.1765747070312	2	544.214369	1086.41418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.002	1	43.002	42.502	43.502	0								0	0	0	0.15486	1	14929	14929		12.532	0	1		+		5645	17115	3794	3840	5517	5517					-0.12556604066276122
DESEDHDDPDN	11	Unmodified	_DESEDHDDPDN_					0	0	0		ENSG00000127083|ENST00000375550|OMD	ENSG00000127083|ENST00000375550|OMD	ENSG00000127083|ENST00000375550|OMD	MSMS	A375_MHC_IP_R2	2	644.201416015625	2	644.215825	1286.4171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.696	1	68.432	67.932	68.932	0.73631								0	0	0	0.16334	1	25652	25652		1.3295	0.80477	1				5646	4076	3795	3841	5518	5518					-0.2146542547009176
DESFFAPV	8	Unmodified	_DESFFAPV_					0	0	0			REV__nc|ENSG00000104517|O95071-2|UBR5	REV__nc|ENSG00000104517|O95071-2|UBR5	MSMS	A375_MHC_IP_R2	2	456.20794677734375	2	456.210901	910.407249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.368	1	58.116	57.616	58.616	0.74894								0	0	0	0.16876	1	21692	21692		10.183	0.83596	1		+		5647	17325	3796	3842	5519	5519					-0.051538721561882994
DESGPGYKDY	10	Unmodified	_DESGPGYKDY_					0	0	0			REV__KRT24|p.G184E|1|0.48|ENSG00000167916|chr17:40703143-40703143|C/T|missense_variant	REV__KRT24|p.G184E|1|0.48|ENSG00000167916|chr17:40703143-40703143|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	565.6796264648438	2	565.735468	1129.45638	-0.088823	-5.025E-05	0.45653	0.00025827	0.36771	0.00020802	566.236229685388	70.079	0.60603	70.079	69.631	70.237	0					14	11	2	0	0	0	0.69306	1	25404	25404		13.906	0.86358	1	665980	+		5648	26870	3797	3843	5520	5520					-0.10316628657915317
DESGSRLLMS	10	Unmodified	_DESGSRLLMS_					0	0	0			REV__ENSG00000179832|ENST00000326134|MROH1	REV__ENSG00000179832|ENST00000326134|MROH1	MULTI-SECPEP	A375_MHC_IP_R1	1	547.1199951171875	2	547.760963	1093.50737	-0.80725	-0.00044218	-2.0696	-0.0011337	-2.8769	-0.0015758	547.7600147736981	67.032	0.66418	67.032	66.632	67.297	0					19	12	2	0	0	0	0.8125	1	24346	24346		18.146	9.9908	1	701120	+		5649	21580	3798	3844	5521	5521					-0.03564002884695583
DESISWEYT	9	Unmodified	_DESISWEYT_					0	0	0			REV__ENSG00000198734|ENST00000367797|F5	REV__ENSG00000198734|ENST00000367797|F5	MSMS	A375_MHC_IP_R2	2	565.2000732421875	2	565.237844	1128.46113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.753	1	71.487	70.987	71.987	0.73421								0	0	0	0.15069	1	26823	26823		20.454	9.6297	1		+		5650	22406	3799	3845	5522	5522					-0.09795744515145088
DESKVTFEQ	9	Unmodified	_DESKVTFEQ_					0	0	0			REV__nc|ENSG00000151150|Q12955-4|ANK3	REV__nc|ENSG00000151150|Q12955-4|ANK3	MULTI-SECPEP	A375_MHC_IP_R2	2	542.171630859375	2	541.753661	1081.49277	-1.0382	-0.00056244	-0.31701	-0.00017174	-1.3552	-0.00073418	541.7520845822645	34.871	1.9801	35.634	35.068	37.048	0.76338					51	38	3	0	0	0	0.61452	1	12772	12772		20.415	2.2682	1	2631700	+		5651	27286	3800	3846	5523	5523					-0.044717517611843505
DESNALGKKF	10	Unmodified	_DESNALGKKF_					0	0	0		ENSG00000272047|ENST00000607778|GTF2H5	ENSG00000272047|ENST00000607778|GTF2H5	ENSG00000272047|ENST00000607778|GTF2H5	MULTI-SECPEP	A375_MHC_IP_R1	1	370.5927429199219	3	370.192623	1107.55604	-0.11642	-4.3099E-05	0.17787	6.5848E-05	0.061451	2.2749E-05	370.1927108449344	29.222	0.55891	29.222	28.945	29.504	0					22	10	3	0	0	0	0.27758	1	9081	9081		39.923	17.265	1	16391000			5652	9989	3801	3847	5524	5524					0.006562337467130419
DESNALGKKF	10	Unmodified	_DESNALGKKF_					0	0	0		ENSG00000272047|ENST00000607778|GTF2H5	ENSG00000272047|ENST00000607778|GTF2H5	ENSG00000272047|ENST00000607778|GTF2H5	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1851196289062	2	554.785296	1107.55604	-1.2742	-0.00070691	0.3919	0.00021742	-0.88232	-0.0004895	554.7854333263575	28.552	0.40398	29.247	28.977	29.381	0.69549					13	7	3	0	0	0	0.0037825	1	9831	9831		169.92	113.75	1	23315000			5653	9989	3801	3847	5525	5525					0.006562337467130419
DESNCYDCF	9	Unmodified	_DESNCYDCF_					0	0	0			REV__nc|ENSG00000053747|Q16787-3|LAMA3	REV__nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-MSMS	A375_MHC_IP_R1	1	549.1671142578125	2	548.173332	1094.33211	-0.43444	-0.00023815	-0.2255	-0.00012362	-0.65994	-0.00036176	548.1733132321363	35.183	0.71339	35.183	34.912	35.625	0					28	13	3	0	0	0	0.63811	2	11590	11590;11841		12.532	3.9383	1	13838000	+		5654	16399	3802	3848	5526;5527	5526					-0.21128165741265548
DESNCYDCF	9	Unmodified	_DESNCYDCF_					0	0	0			REV__nc|ENSG00000053747|Q16787-3|LAMA3	REV__nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-MSMS	A375_MHC_IP_R2	2	549.1665649414062	2	548.173332	1094.33211	-0.98847	-0.00054185	-0.13414	-7.3529E-05	-1.1226	-0.00061538	548.1732844695829	34.61	0.71037	35.374	35.017	35.727	0.76338					29	13	3	0	0	0	0.63811	1	12397	12397		12.532	3.9383	1	16093000	+		5655	16399	3802	3848	5528	5528					-0.21128165741265548
DESPARPSL	9	Unmodified	_DESPARPSL_					0	0	0			REV__ENSG00000142675|ENST00000361530|CNKSR1	REV__ENSG00000142675|ENST00000361530|CNKSR1	MULTI-SECPEP	A375_MHC_IP_R2	2	486.13128662109375	2	486.243264	970.471974	-0.77799	-0.00037829	0.62133	0.00030212	-0.15667	-7.6178E-05	486.2440450358133	66.171	0.51129	66.909	66.629	67.14	0.73811					13	9	2	0	0	0	0.69507	1	25118	25118		5.7319	0	1	631840	+		5656	19319	3803	3849	5529	5529					-0.01444297350190027
DESPVFKEF	9	Unmodified	_DESPVFKEF_					0	0	0		ENSG00000138604|ENST00000261858|GLCE	ENSG00000138604|ENST00000261858|GLCE	ENSG00000138604|ENST00000261858|GLCE	MULTI-SECPEP	A375_MHC_IP_R1	1	549.648681640625	2	549.261122	1096.50769	-0.54153	-0.00029744	0.2445	0.0001343	-0.29703	-0.00016315	549.2611172849648	79.759	0.61568	79.759	79.47	80.086	0					20	11	2	0	0	0	0.53098	1	29158	29158		33.445	12.991	1	4125500			5657	5005	3804	3850	5530	5530					-0.03670259893192451
DESQSTYCDY	10	Unmodified	_DESQSTYCDY_					0	0	0			REV__nc|ENSG00000180336|A2RUB1-5|MEIOC	REV__nc|ENSG00000180336|A2RUB1-5|MEIOC	MULTI-SECPEP	A375_MHC_IP_R1	1	606.1129760742188	2	605.713876	1209.4132	-0.59712	-0.00036168	-0.29437	-0.0001783	-0.89148	-0.00053998	605.7137769374964	90.768	0.50879	90.768	90.488	90.997	0					13	9	2	0	0	0	0.94421	1	33383	33383		1.6526	0	1	1651000	+		5658	21606	3805	3851	5531	5531					-0.18313186497493916
DESQVESGPSG	11	Unmodified	_DESQVESGPSG_					0	0	0			REV__nc|ENSG00000115464|Q70CQ2-3|USP34	REV__nc|ENSG00000115464|Q70CQ2-3|USP34	MSMS	A375_MHC_IP_R2	2	546.18408203125	2	546.228007	1090.44146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.706	1	67.442	66.942	67.942	0.73631								0	0	0	0.15694	1	25271	25271		16.149	1.3108	1		+		5659	17889	3806	3852	5532	5532					-0.10014120525897852
DESQVVTRY	9	Unmodified	_DESQVVTRY_					0	0	0		nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19;nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;ENST00000483667.1_1_3:49147547-49148163:-|nuORF	nc|ENSG00000172046|O94966-7|USP19	nc|ENSG00000172046|O94966-7|USP19	MULTI-MSMS	A375_MHC_IP_R1	1	548.6815795898438	2	548.767103	1095.51965	-0.45579	-0.00025012	-0.24365	-0.00013371	-0.69944	-0.00038383	548.7669904094566	35.061	0.91737	35.061	34.81	35.727	0					48	17	4	0	0	0	0.46465	1	11890	11890		21.537	5.3879	1	51521000			5660	7674	3807	3853	5533	5533					-0.024286431500058825
DESQVVTRY	9	Unmodified	_DESQVVTRY_					0	0	0		nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19;nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;ENST00000483667.1_1_3:49147547-49148163:-|nuORF	nc|ENSG00000172046|O94966-7|USP19	nc|ENSG00000172046|O94966-7|USP19	MULTI-SECPEP	A375_MHC_IP_R2	2	549.1665649414062	2	548.767103	1095.51965	-1.0125	-0.0005556	-0.26786	-0.00014699	-1.2803	-0.00070259	548.767006995346	34.456	0.66106	35.209	34.955	35.616	0.75225					42	12	4	0	0	0	0.0078253	1	12397	12397		168.54	89.809	1	49284000			5661	7674	3807	3853	5534	5534					-0.024286431500058825
DESRYPDPV	9	Unmodified	_DESRYPDPV_					0	0	0			REV__nc|ENSG00000171004|Q96MM7-2|HS6ST2	REV__nc|ENSG00000171004|Q96MM7-2|HS6ST2	MULTI-MSMS	A375_MHC_IP_R1	1	539.6464233398438	2	539.246003	1076.47745	-0.81795	-0.00044108	0.23178	0.00012498	-0.58617	-0.00031609	539.2463183715531	66.02	0.558	66.02	65.768	66.326	0					14	10	2	0	0	0	0.63811	1	23923	23923		12.532	1.7076	1	1352200	+		5662	21036	3808	3854	5535	5535					-0.0577261855839879
DESSRAPFQY	10	Unmodified	_DESSRAPFQY_					0	0	0		PCLO|p.M3987*|2|0.34|ENSG00000186472|chr7:82916028-82916028|A/-|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO	PCLO|p.M3987*|2|0.34|ENSG00000186472|chr7:82916028-82916028|A/-|frameshift_variant	PCLO|p.M3987*|2|0.34|ENSG00000186472|chr7:82916028-82916028|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	600.6692504882812	2	600.27001	1198.52547	-0.34829	-0.00020907	-0.52132	-0.00031294	-0.86961	-0.000522	600.2695672135877	47.451	0.66294	48.212	47.817	48.48	0.76128					23	12	3	0	0	0	0.8125	1	17811	17811		24.021	3.5669	1	6533600			5663	8749	3809	3855	5536	5536					-0.06585544638323881
DESTHHPSI	9	Unmodified	_DESTHHPSI_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN	REV__ENSG00000152818|ENST00000367545|UTRN	MSMS	A375_MHC_IP_R1	1	511.6872863769531	2	511.73052	1021.44649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.124	1	86.124	85.624	86.624	0								0	0	0	0.15486	1	31572	31572		12.532	4.6214	1		+		5664	19819	3810	3856	5537	5537					-0.06337771872620124
DESVGPHSLD	10	Unmodified	_DESVGPHSLD_					0	0	0			REV__nc|ENSG00000109814|O60701-3|UGDH	REV__nc|ENSG00000109814|O60701-3|UGDH	MULTI-SECPEP	A375_MHC_IP_R1	1	527.6636962890625	2	528.235635	1054.45672	-0.56307	-0.00029744	-0.37496	-0.00019807	-0.93804	-0.0004955	528.2353339362409	61.05	0.66193	61.05	60.669	61.331	0					23	12	3	0	0	0	0.72086	1	22057	22057		24.021	8.1734	1	4401200	+		5665	17597	3811	3857	5538	5538					-0.06833208938041935
DETAEEPGL	9	Unmodified	_DETAEEPGL_					0	0	0			REV__ENSG00000112659|ENST00000252050|CUL9	REV__ENSG00000112659|ENST00000252050|CUL9	MSMS	A375_MHC_IP_R1	1	480.6740417480469	2	480.711462	959.408371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.323	1	67.323	66.823	67.823	0								0	0	0	0.15131	1	24395	24395		19.439	1.304	1		+		5666	17745	3812	3858	5539	5539					-0.0729570257794876
DETDSGAGLKW	11	Unmodified	_DETDSGAGLKW_					0	0	0		nc|ENSG00000160049|O00273-2|DFFA;ENSG00000160049|ENST00000377038|DFFA	nc|ENSG00000160049|O00273-2|DFFA	nc|ENSG00000160049|O00273-2|DFFA	MULTI-MSMS	A375_MHC_IP_R1	1	590.169677734375	2	589.769842	1177.52513	-0.28309	-0.00016696	-0.1302	-7.6787E-05	-0.41329	-0.00024375	589.7697249608925	61.763	0.66341	61.763	61.585	62.249	0					30	12	3	0	0	0	1.9434E-08	1	22285	22285		163.69	129.28	1	8031900			5667	6392	3813	3859	5540	5540					-0.056529643581598066
DETDSGAGLKW	11	Unmodified	_DETDSGAGLKW_					0	0	0		nc|ENSG00000160049|O00273-2|DFFA;ENSG00000160049|ENST00000377038|DFFA	nc|ENSG00000160049|O00273-2|DFFA	nc|ENSG00000160049|O00273-2|DFFA	MULTI-MSMS	A375_MHC_IP_R2	2	589.6559448242188	2	589.769842	1177.52513	-0.87752	-0.00051754	0.25097	0.00014802	-0.62655	-0.00036952	589.7698677585139	61.174	0.85682	61.919	61.515	62.372	0.74504					35	16	3	0	0	0	0.015186	1	23106	23106		90.135	61.053	1	7325700			5668	6392	3813	3859	5541	5541					-0.056529643581598066
DETEAVKRY	9	Unmodified	_DETEAVKRY_					0	0	0		nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	MULTI-MSMS	A375_MHC_IP_R1	1	556.1746215820312	2	555.774928	1109.5353	-0.41025	-0.00022801	0.092697	5.1518E-05	-0.31756	-0.00017649	555.7747945399286	20.73	0.56148	20.73	20.384	20.946	0					16	10	2	0	0	0	0.027818	1	5344	5344		76.825	16.751	1	1751200			5669	1855	3814	3860	5542	5542					-0.015083566329394671
DETEAVKRY	9	Unmodified	_DETEAVKRY_					0	0	0		nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	MULTI-SECPEP	A375_MHC_IP_R1	1	371.25250244140625	3	370.852377	1109.5353	0.46844	0.00017372	0.87872	0.00032588	1.3472	0.0004996	370.8522769684519	20.721	0.76425	20.721	20.334	21.098	0					36	14	4	0	0	0	0.65527	1	5338	5338		16.566	3.6933	1	4821400			5670	1855	3814	3860	5543	5543					-0.015083566329394671
DETEAVKRY	9	Unmodified	_DETEAVKRY_					0	0	0		nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	MULTI-MSMS	A375_MHC_IP_R2	2	556.17431640625	2	555.774928	1109.5353	-1.0612	-0.00058979	0.3903	0.00021692	-0.6709	-0.00037287	555.774900526025	19.39	0.35664	19.993	19.833	20.19	0.60308					12	6	3	0	0	0	0.04093	1	5968	5968		67.838	16.208	1	2064500			5671	1855	3814	3860	5544	5544					-0.015083566329394671
DETEIRSF	8	Unmodified	_DETEIRSF_					0	0	0		ENSG00000092345|ENST00000399444|DAZL;nc|ENSG00000092345|Q92904-2|DAZL	ENSG00000092345|ENST00000399444|DAZL	ENSG00000092345|ENST00000399444|DAZL	MULTI-MSMS	A375_MHC_IP_R2	2	499.6876220703125	2	498.735271	995.45599	-0.56428	-0.00028142	-0.21889	-0.00010917	-0.78317	-0.00039059	498.73513910068397	30.269	0.80909	30.988	30.809	31.618	0.71857					41	15	4	0	0	0	0.73946	1	10667	10667		23.148	3.8914	1	19577000			5672	2003	3815	3861	5545	5545					-0.04192003587081672
DETELVDRPVP	11	Unmodified	_DETELVDRPVP_					0	0	0			REV__nc|ENSG00000148337|Q9ULV3-5|CIZ1	REV__nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-MSMS	A375_MHC_IP_R1	1	423.927978515625	3	423.882225	1268.62485	-0.15292	-6.4821E-05	-0.14231	-6.0322E-05	-0.29523	-0.00012514	423.88211093560557	34.37	0.40358	34.37	34.154	34.557	0					16	7	3	0	0	0	0.73239	1	11289	11289		6.6235	0.3891	1	4545400	+		5673	19621	3816	3862	5546	5546					0.0012785325575350726
DETELVDRPVP	11	Unmodified	_DETELVDRPVP_					0	0	0			REV__nc|ENSG00000148337|Q9ULV3-5|CIZ1	REV__nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-SECPEP	A375_MHC_IP_R1	1	424.2821350097656	3	423.882225	1268.62485	-0.15292	-6.4821E-05	-0.14231	-6.0322E-05	-0.29523	-0.00012514	423.88211093560557	34.37	0.40358	34.37	34.154	34.557	0					16	7	3	0	0	0	0.98748	1	11359	11359		2.4348	2.4348	1	4545400	+		5674	19621	3816	3862	5547	5547					0.0012785325575350726
DETFYSTERY	10	Unmodified	_DETFYSTERY_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MULTI-MSMS	A375_MHC_IP_R1	1	656.1802978515625	2	655.780407	1309.54626	-0.32284	-0.00021171	0.27203	0.00017839	-0.050809	-3.3319E-05	655.7805356370154	56.422	0.55783	56.422	56.092	56.65	0					18	10	3	0	0	0	0.69306	1	20245	20245		13.906	4.5229	1	2067000			5675	7848	3817	3863	5548	5548					-0.09612999049318205
DETGMPKERFS	11	Unmodified	_DETGMPKERFS_					0	0	0		nc|ENSG00000275243|A0A087WV62|TRBV16	nc|ENSG00000275243|A0A087WV62|TRBV16	nc|ENSG00000275243|A0A087WV62|TRBV16	MULTI-MSMS	A375_MHC_IP_R2	2	649.1956176757812	2	648.798077	1295.5816	-0.89559	-0.00058106	-1.9708	-0.0012786	-2.8664	-0.0018597	648.7971923598851	41.254	0.86401	42.029	41.743	42.607	0.77451					35	16	3	0	0	0	0.63737	1	15283	15283		20.415	3.3016	1	8867400			5676	14940	3818	3864	5549	5549					-0.054366597931903016
DETGVLKGF	9	Unmodified	_DETGVLKGF_					0	0	0		ENST00000441170.1_1_4:118496255-118496735:-|nuORF;nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A	ENST00000441170.1_1_4:118496255-118496735:-|nuORF	ENST00000441170.1_1_4:118496255-118496735:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	483.6506652832031	2	483.250557	964.486562	-0.10366	-5.0095E-05	1.1853	0.00057278	1.0816	0.00052268	483.2506581371051	72.008	0.60712	72.008	71.765	72.372	0					28	11	3	0	0	0	0.037683	1	26181	26181		69.105	36.799	1	7430000			5677	3796	3819	3865	5550	5550					0.0028977479796594707
DETGVLKGF	9	Unmodified	_DETGVLKGF_					0	0	0		ENST00000441170.1_1_4:118496255-118496735:-|nuORF;nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A	ENST00000441170.1_1_4:118496255-118496735:-|nuORF	ENST00000441170.1_1_4:118496255-118496735:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	483.6502990722656	2	483.250557	964.486562	-0.79664	-0.00038497	0.72901	0.00035229	-0.067628	-3.2681E-05	483.2505688649211	71.251	0.65837	71.985	71.706	72.364	0.73421					31	12	3	0	0	0	0.015701	1	27008	27008		88.954	31.483	1	7016700			5678	3796	3819	3865	5551	5551					0.0028977479796594707
DETIEHVF	8	Unmodified	_DETIEHVF_					0	0	0		nc|ENSG00000100479|P56282-3|POLE2;ENSG00000100479|ENST00000216367|POLE2	nc|ENSG00000100479|P56282-3|POLE2	nc|ENSG00000100479|P56282-3|POLE2	MSMS	A375_MHC_IP_R2	2	495.1396789550781	2	495.232364	988.450176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.078	1	58.827	58.327	59.327	0.74894								0	0	0	0.16876	1	21969	21969		22.453	7.6144	1				5679	2184	3820	3866	5552	5552					-0.04451102098744286
DETRLRVI	8	Unmodified	_DETRLRVI_					0	0	0			REV__nc|ENSG00000139697|A3KN83-3|SBNO1	REV__nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-MSMS	A375_MHC_IP_R2	2	501.6897888183594	2	501.290548	1000.56654	-0.3975	-0.00019926	0.057157	2.8652E-05	-0.34035	-0.00017061	501.2904638081066	114.09	5.6505	114.8	111.98	117.63	0.70984					264	110	4	0	0	0	0.77702	1	44168	44168		5.7604	0	1	35047000	+		5680	19173	3821	3867	5553	5553					0.06628261191815454
DETSTYSSKL	10	Unmodified	_DETSTYSSKL_					0	0	0		nc|ENSG00000058600|Q9NVU0-3|POLR3E;nc|ENSG00000058600|Q9NVU0-2|POLR3E;nc|ENSG00000058600|Q9NVU0-5|POLR3E;ENST00000564061.5_1_16:22308800-22337695:+|nuORF;nc|ENSG00000058600|Q9NVU0-4|POLR3E;ENSG00000058600|ENST00000299853|POLR3E;POLR3E|p.C378*|1|0.22|ENSG00000058600|chr16:22324507-22324514|GCGCCGAG/-|frameshift_variant;ENST00000564256.1_1_16:22316488-22321235:+|nuORF	nc|ENSG00000058600|Q9NVU0-3|POLR3E	nc|ENSG00000058600|Q9NVU0-3|POLR3E	MULTI-SECPEP	A375_MHC_IP_R1	1	1130.1434326171875	1	1130.52117	1129.5139	0.3024	0.00034187	-1.5961	-0.0018044	-1.2937	-0.0014626	1130.519605041939	107.88	0.71114	107.88	107.6	108.31	0					23	13	2	0	0	0	0.90853	1	39505	39505		10.824	2.9138	1	3595200			5681	1294	3822	3868	5554	5554					-0.045677864522986056
DETVTEMNF	9	Unmodified	_DETVTEMNF_					0	0	0		ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	MSMS	A375_MHC_IP_R1	1	543.0675659179688	2	543.226422	1084.43829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.204	1	87.204	86.704	87.704	0								0	0	0	0.14905	1	31994	31994		23.148	2.6948	1				5682	7828	3823	3869	5555	5555					-0.10055086904253585
DEVASVYQSY	10	Unmodified	_DEVASVYQSY_					0	0	0		ENSG00000088888|ENST00000428216|MAVS;nc|ENSG00000088888|Q7Z434-5|MAVS;nc|ENSG00000088888|Q7Z434-2|MAVS	ENSG00000088888|ENST00000428216|MAVS	ENSG00000088888|ENST00000428216|MAVS	MULTI-MSMS	A375_MHC_IP_R1	1	581.1588745117188	2	580.758943	1159.50333	0.21122	0.00012267	0.45902	0.00026658	0.67024	0.00038925	580.7588385975496	69.707	0.40379	69.707	69.579	69.983	0					11	7	2	0	0	0	0.39599	1	25331	25331		34.402	21.359	1	1153500			5683	1903	3824	3870	5556	5556					-0.07003769106745494
DEVCQLWSW	9	Unmodified	_DEVCQLWSW_					0	0	0			REV__nc|ENSG00000214900|Q8WXQ3|LINC01599	REV__nc|ENSG00000214900|Q8WXQ3|LINC01599	MSMS	A375_MHC_IP_R2	2	583.210205078125	2	583.252774	1164.491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.202	1	78.945	78.445	79.445	0.74293								0	0	0	0.15486	1	29697	29697		7.9102	0.62092	1		+		5684	27493	3825	3871	5557	5557					-0.08467084050789708
DEVDKVNQY	9	Unmodified	_DEVDKVNQY_					0	0	0		ENSG00000198825|ENST00000650623|INPP5F;nc|ENSG00000198825|Q9Y2H2-4|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MSMS	A375_MHC_IP_R1	1	555.2091674804688	2	555.259111	1108.50367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.45	1	29.45	28.95	29.95	0								0	0	0	0.084521	1	9222	9222		45.7	16.618	1				5685	9337	3826	3872	5558	5558					-0.04624349386904214
DEVDKVNQY	9	Unmodified	_DEVDKVNQY_					0	0	0		ENSG00000198825|ENST00000650623|INPP5F;nc|ENSG00000198825|Q9Y2H2-4|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MULTI-MSMS	A375_MHC_IP_R2	2	555.6583862304688	2	555.259111	1108.50367	-1.5812	-0.00087795	-0.19022	-0.00010562	-1.7714	-0.00098357	555.2591679272726	28.97	0.39646	29.668	29.534	29.93	0.69872					12	7	2	0	0	0	0.0098085	1	10092	10092		114.2	66.453	1	15706000			5686	9337	3826	3872	5559	5559					-0.04624349386904214
DEVDRISEW	9	Unmodified	_DEVDRISEW_					0	0	0		nc|ENSG00000167674|Q7Z4V5-2|HDGFL2;ENSG00000167674|ENST00000616600|HDGFL2;nc|ENSG00000167674|Q7Z4V5-4|HDGFL2;nc|ENSG00000167674|Q7Z4V5-3|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	MULTI-SECPEP	A375_MHC_IP_R1	1	575.1649780273438	2	574.76456	1147.51457	0.049441	2.8417E-05	0.67376	0.00038726	0.72321	0.00041567	574.7650896198099	69.002	0.81134	69.002	68.717	69.529	0					26	15	3	0	0	0	0.10412	1	25037	25037		84.522	36.774	1	2645800			5687	7209	3827	3873	5560	5560					-0.05328947012617391
DEVDRISEW	9	Unmodified	_DEVDRISEW_					0	0	0		nc|ENSG00000167674|Q7Z4V5-2|HDGFL2;ENSG00000167674|ENST00000616600|HDGFL2;nc|ENSG00000167674|Q7Z4V5-4|HDGFL2;nc|ENSG00000167674|Q7Z4V5-3|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	MULTI-MSMS	A375_MHC_IP_R2	2	575.1642456054688	2	574.76456	1147.51457	-0.097497	-5.6038E-05	0.18252	0.00010491	0.085027	4.887E-05	574.7647151719502	68.419	0.75896	69.154	68.816	69.575	0.73511					27	14	3	0	0	0	0.014789	1	25930	25930		90.135	37.867	1	2211300			5688	7209	3827	3873	5561	5561					-0.05328947012617391
DEVERVITI	9	Unmodified	_DEVERVITI_					0	0	0		ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18;ENST00000474626.5_1_6:33239896-33243984:+|nuORF	ENST00000496813.5_1_6:33239896-33244045:+|nuORF	ENST00000496813.5_1_6:33239896-33244045:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	536.6582641601562	2	537.295496	1072.57644	-0.86045	-0.00046232	-0.12472	-6.7013E-05	-0.98518	-0.00052933	537.2953371055946	76.177	1.2178	76.918	76.487	77.705	0.74052					38	23	3	0	0	0	0.47674	1	28960	28960		18.373	2.224	1	4688500			5689	9723	3828	3874	5562	5562					0.04305404406522939
DEVFFSEKIY	10	Unmodified	_DEVFFSEKIY_					0	0	0		ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;ENST00000560033.5_1_15:78834730-78834988:+|nuORF;PSMA4|p.L56F|1|0.15|ENSG00000041357|chr15:78542602-78542602|C/T|missense_variant	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	639.2081298828125	2	638.808436	1275.60232	-0.63443	-0.00040528	0.20194	0.000129	-0.4325	-0.00027628	638.8085271868698	98.511	0.7635	98.511	98.151	98.914	0					47	14	4	0	0	0	0.018452	1	36144	36144		147.24	147.24	1	10877000			5690	1168	3829	3875	5563	5563					-0.024457461418478488
DEVFFSEKIY	10	Unmodified	_DEVFFSEKIY_					0	0	0		ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;ENST00000560033.5_1_15:78834730-78834988:+|nuORF;PSMA4|p.L56F|1|0.15|ENSG00000041357|chr15:78542602-78542602|C/T|missense_variant	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	639.2078247070312	2	638.808436	1275.60232	-0.83558	-0.00053378	0.74371	0.00047509	-0.091879	-5.8693E-05	638.8086841397827	97.807	1.0187	98.563	98.178	99.197	0.75586					47	19	4	0	0	0	0.072569	1	37085	37085		94.909	81.003	1	9360800			5691	1168	3829	3875	5564	5564					-0.024457461418478488
DEVIIPHSGW	10	Unmodified	_DEVIIPHSGW_					0	0	0		ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;ENST00000527599.1_1_11:57569484-57571277:+|nuORF	ENSG00000198561|ENST00000399050|CTNND1	ENSG00000198561|ENST00000399050|CTNND1	MULTI-SECPEP	A375_MHC_IP_R1	1	576.1890869140625	2	576.787838	1151.56112	-0.37409	-0.00021577	-0.062285	-3.5925E-05	-0.43637	-0.00025169	576.7878757057234	84.9	0.35828	84.9	84.697	85.056	0					15	6	3	0	0	0	0.51493	1	31102	31102		45.7	31.794	1	3031000			5692	9283	3830	3876	5565	5565					-0.008594623906674315
DEVIIPHSGW	10	Unmodified	_DEVIIPHSGW_					0	0	0		ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;ENST00000527599.1_1_11:57569484-57571277:+|nuORF	ENSG00000198561|ENST00000399050|CTNND1	ENSG00000198561|ENST00000399050|CTNND1	MULTI-SECPEP	A375_MHC_IP_R2	2	576.6564331054688	2	576.787838	1151.56112	-0.075089	-4.3311E-05	-0.066703	-3.8473E-05	-0.14179	-8.1784E-05	576.7879860096863	84.252	0.50963	84.991	84.766	85.276	0.73962					14	9	2	0	0	0	0.33054	1	32000	32000		39.95	30.567	1	3341800			5693	9283	3830	3876	5566	5566					-0.008594623906674315
DEVKRKQY	8	Unmodified	_DEVKRKQY_					0	0	0		ENST00000577083.1_1_16:4491378-4492529:+|nuORF;nc|ENSG00000103423|Q96EY1-2|DNAJA3;ENSG00000103423|ENST00000262375|DNAJA3	ENST00000577083.1_1_16:4491378-4492529:+|nuORF	ENST00000577083.1_1_16:4491378-4492529:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	533.687744140625	2	533.288005	1064.56146	-0.63403	-0.00033812	-0.60458	-0.00032241	-1.2386	-0.00066053	533.2880767542285	59.926	0.50865	59.926	59.651	60.159	0					29	9	4	0	0	0	0.96266	1	21590	21590		7.2892	0	1	4730500			5694	2450	3831	3877	5567	5567					0.03175957329199264
DEVQPNGKIF	10	Unmodified	_DEVQPNGKIF_					0	0	0		ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	MULTI-SECPEP	A375_MHC_IP_R1	1	574.1929931640625	2	573.793121	1145.57169	-0.23795	-0.00013654	-1.177	-0.00067534	-1.4149	-0.00081187	573.7923132209961	55.084	0.8637	55.084	54.72	55.584	0					26	16	2	0	0	0	0.024081	1	19682	19682		99.755	55.897	1	7143700			5695	3865	3832	3878	5568	5568					0.0047252026377009315
DEVQPNGKIF	10	Unmodified	_DEVQPNGKIF_					0	0	0		ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	MULTI-MATCH	A375_MHC_IP_R2	2		2	573.793121	1145.57169	-0.44984	-0.00025812	-1.4316	-0.00082143	-1.8814	-0.0010795	573.7921851593788	54.57	0.96585	55.321	54.66	55.626	0.75075	0.11839	-0.00013934	NaN	99.755	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6320600			5696	3865	3832	3878							0.0047252026377009315
DEVQRLTATLK	11	Unmodified	_DEVQRLTATLK_					0	0	0		ENSG00000144395|ENST00000389175|CCDC150;ENST00000471546.5_1_2:197504460-197531652:+|nuORF;ENST00000471033.5_1_2:197521653-197521863:+|nuORF;ENST00000495513.1_1_2:197521477-197537114:+|nuORF	ENSG00000144395|ENST00000389175|CCDC150	ENSG00000144395|ENST00000389175|CCDC150	MULTI-MSMS	A375_MHC_IP_R2	2	1274.6136474609375	1	1273.71104	1272.70376	0.49326	0.00062827	2.8055	0.0035733	3.2987	0.0042016	1273.7168350665668	113.1	0.25414	113.81	113.67	113.92	0.70985					6	4	2	0	0	0	0.72728	1	42679	42679		11.495	2.1116	1	5128600			5697	5483	3833	3879	5569	5569					0.07832125280697255
DEVQVVRGHY	10	Unmodified	_DEVQVVRGHY_					0	0	0		ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1;ENST00000415894.1_1_1:165788676-165788994:+|nuORF;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENST00000495104.1_1_4:165841962-165842070:-|nuORF	ENSG00000161970|ENST00000648839|RPL26;ENST00000495104.1_1_4:165841962-165842070:-|nuORF	ENSG00000161970|ENST00000648839|RPL26	MULTI-SECPEP	A375_MHC_IP_R1	1	401.5916748046875	3	401.203522	1200.58874	-0.27264	-0.00010938	0.026553	1.0653E-05	-0.24608	-9.873E-05	401.2037391394032	31.541	0.40593	31.541	31.363	31.769	0					11	7	3	0	0	0	0.74754	1	10118	10118		24.882	19.479	1	1493400			5698	1144;12699	3834	3880	5570	5570					-0.0035355913041712483
DEVSADFHV	9	Unmodified	_DEVSADFHV_					0	0	0			REV__ENSG00000129538|ENST00000397967|RNASE1	REV__ENSG00000129538|ENST00000397967|RNASE1	MULTI-MSMS	A375_MHC_IP_R1	1	511.1545104980469	2	509.727446	1017.44034	-0.59668	-0.00030414	0.15079	7.6863E-05	-0.44589	-0.00022728	509.72732732395644	27.057	0.70489	27.057	26.828	27.533	0					42	13	5	0	0	0	0.46038	1	8087	8087		21.747	1.293	1	81303000	+		5699	18497	3835	3881	5571	5571					-0.06768290104139396
DEVSFIKKL	9	Unmodified	_DEVSFIKKL_					0	0	0		ENST00000397876.6_1_16:106379-107140:+|nuORF;ENST00000481947.1_1_16:106326-107140:+|nuORF;ENSG00000161981|ENST00000293861|SNRNP25;nc|ENSG00000161981|Q9BV90|SNRNP25	ENST00000397876.6_1_16:106379-107140:+|nuORF	ENST00000397876.6_1_16:106379-107140:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	540.2108154296875	2	539.810782	1077.60701	-0.80597	-0.00043507	0.63713	0.00034393	-0.16883	-9.1136E-05	539.8110120094711	65.972	0.55803	65.972	65.666	66.224	0					17	10	2	0	0	0	0.16595	1	23894	23894		61.602	23.426	1	1871800			5700	6499	3836	3882	5572	5572					0.07131182791590618
DEVSFIKKL	9	Unmodified	_DEVSFIKKL_					0	0	0		ENST00000397876.6_1_16:106379-107140:+|nuORF;ENST00000481947.1_1_16:106326-107140:+|nuORF;ENSG00000161981|ENST00000293861|SNRNP25;nc|ENSG00000161981|Q9BV90|SNRNP25	ENST00000397876.6_1_16:106379-107140:+|nuORF	ENST00000397876.6_1_16:106379-107140:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	360.6095275878906	3	360.209613	1077.60701	-0.26542	-9.5606E-05	0.15557	5.6038E-05	-0.10985	-3.9567E-05	360.20954465245967	65.142	0.55916	65.88	65.613	66.172	0.73812					31	10	4	0	0	0	0.58268	1	24694	24694		15.739	4.2207	1	1681900			5701	6499	3836	3882	5573	5573					0.07131182791590618
DEVSFIKKL	9	Unmodified	_DEVSFIKKL_					0	0	0		ENST00000397876.6_1_16:106379-107140:+|nuORF;ENST00000481947.1_1_16:106326-107140:+|nuORF;ENSG00000161981|ENST00000293861|SNRNP25;nc|ENSG00000161981|Q9BV90|SNRNP25	ENST00000397876.6_1_16:106379-107140:+|nuORF	ENST00000397876.6_1_16:106379-107140:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	360.209613	1077.60701	-0.029098	-1.0481E-05	0.34049	0.00012265	0.31139	0.00011217	360.209706935664	65.965	0.50719	65.965	65.717	66.224	0	0.04244	8.5661E-05	NaN	15.739	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1425800			5702	6499	3836	3882							0.07131182791590618
DEVSLHKKL	9	Unmodified	_DEVSLHKKL_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	A375_MHC_IP_R2	2	357.2486572265625	3	356.873113	1067.59751	-0.49552	-0.00017684	0.086363	3.0821E-05	-0.40915	-0.00014602	356.8731012325095	19.316	0.50623	19.92	19.633	20.139	0.60308					13	9	2	0	0	0	0.64945	1	5930	5930		11.518	3.0736	1	972200			5703	6157	3837	3883	5574	5574					0.06641414506043475
DEVSPLLKQY	10	Unmodified	_DEVSPLLKQY_					0	0	0		nc|ENSG00000188986|Q8WX92|NELFB;ENSG00000188986|ENST00000343053|NELFB	nc|ENSG00000188986|Q8WX92|NELFB	nc|ENSG00000188986|Q8WX92|NELFB	MULTI-SECPEP	A375_MHC_IP_R1	1	596.7171020507812	2	596.316428	1190.6183	-0.4097	-0.00024431	0.60392	0.00036013	0.19423	0.00011582	596.3168209921541	73.437	0.45499	73.437	73.235	73.69	0					19	8	3	0	0	0	0.22459	1	26736	26736		57.722	19.107	1	3055200			5704	8949	3838	3884	5575	5575					0.03061960095055838
DEVSPLLKQY	10	Unmodified	_DEVSPLLKQY_					0	0	0		nc|ENSG00000188986|Q8WX92|NELFB;ENSG00000188986|ENST00000343053|NELFB	nc|ENSG00000188986|Q8WX92|NELFB	nc|ENSG00000188986|Q8WX92|NELFB	MULTI-SECPEP	A375_MHC_IP_R2	2	596.7174072265625	2	596.316428	1190.6183	-0.63012	-0.00037575	0.74121	0.00044199	0.11108	6.6241E-05	596.3167626627088	72.807	0.5589	73.542	73.226	73.785	0.73541					23	10	3	0	0	0	0.17675	1	27594	27594		72.968	38.036	1	3429100			5705	8949	3838	3884	5576	5576					0.03061960095055838
DEVTHTVPF	9	Unmodified	_DEVTHTVPF_					0	0	0		ENST00000436287.1_1_1:224051789-224052101:-|nuORF	ENST00000436287.1_1_1:224051789-224052101:-|nuORF	ENST00000436287.1_1_1:224051789-224052101:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	522.169677734375	2	522.753464	1043.49238	-0.51247	-0.0002679	-1.5975	-0.0008351	-2.11	-0.001103	522.7531501944973	42.312	0.35796	43.084	42.91	43.268	0.7724					10	6	2	0	0	0	0.71541	1	15798	15798		11.64	1.4569	1	1340600			5706	11926	3839	3885	5577	5577					-0.027631266903881624
DEVTILVHL	9	Unmodified	_DEVTILVHL_					0	0	0			REV__nc|ENSG00000112531|Q96PU8-9|QKI	REV__nc|ENSG00000112531|Q96PU8-9|QKI	MSMS	A375_MHC_IP_R1	1	519.7982177734375	2	519.795132	1037.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.674	1	98.674	98.174	99.174	0								0	0	0	0.15486	1	36252	36252		8.5933	2.8329	1		+		5707	27178	3840	3886	5578	5578					0.058426097574511004
DEVTVGKFY	9	Unmodified	_DEVTVGKFY_					0	0	0		ENSG00000081248|ENST00000362061|CACNA1S;nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000157388|Q01668-4|CACNA1D	ENSG00000081248|ENST00000362061|CACNA1S;nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000157388|Q01668-3|CACNA1D	ENSG00000081248|ENST00000362061|CACNA1S	MULTI-MSMS	A375_MHC_IP_R1	1	529.6633911132812	2	529.263665	1056.51278	-0.68064	-0.00036024	0.077603	4.1073E-05	-0.60303	-0.00031916	529.2636601082216	65.638	0.6118	65.638	65.309	65.921	0					17	11	2	0	0	0	0.46465	1	23822	23822		21.537	6.6987	1	1405100			5708	1734;6240;5876	3841	3887	5579	5579					-0.013219560305742561
DEVTVGKFY	9	Unmodified	_DEVTVGKFY_					0	0	0		ENSG00000081248|ENST00000362061|CACNA1S;nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000157388|Q01668-4|CACNA1D	ENSG00000081248|ENST00000362061|CACNA1S;nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000157388|Q01668-3|CACNA1D	ENSG00000081248|ENST00000362061|CACNA1S	MULTI-MATCH	A375_MHC_IP_R2	2		2	529.263665	1056.51278	-0.5952	-0.00031502	-0.35634	-0.0001886	-0.95154	-0.00050361	529.2633646351485	64.993	0.55722	65.731	65.41	65.968	0.73812	0.046442	-0.00022344	NaN	21.537	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1860700			5709	1734;6240;5876	3841	3887							-0.013219560305742561
DEVYQDNVYS	10	Unmodified	_DEVYQDNVYS_					0	0	0		ENSG00000166123|ENST00000340124|GPT2;nc|ENSG00000166123|Q8TD30-2|GPT2;ENST00000562801.5_1_16:46950457-46962906:+|nuORF	ENSG00000166123|ENST00000340124|GPT2	ENSG00000166123|ENST00000340124|GPT2	MULTI-MSMS	A375_MHC_IP_R1	1	617.598876953125	2	616.259308	1230.50406	-0.22918	-0.00014124	-0.3406	-0.0002099	-0.56978	-0.00035113	616.2596462898881	62.527	1.0757	62.527	62.148	63.223	0					44	20	4	0	0	0	0.69306	1	22508	22508		13.906	1.6654	1	6389200			5710	7024	3842	3888	5580	5580					-0.1019697445769907
DEWITIDKF	9	Unmodified	_DEWITIDKF_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1;ENST00000484454.1_1_1:234534119-234536616:-|nuORF;ENST00000462259.5_1_1:234527325-234536616:-|nuORF	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	390.3076477050781	3	389.529123	1165.56554	0.090264	3.5161E-05	0.38413	0.00014963	0.4744	0.00018479	389.52923997040875	53.305	0.75948	53.305	52.796	53.555	0					18	14	2	0	0	0	0.77834	1	18853	18853		2.7352	0	1	1692000			5711	1303	3843	3889	5581	5581					-0.010619979677585434
DEWNSNHTI	9	Unmodified	_DEWNSNHTI_					0	0	0		ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96	ENSG00000153283|ENST00000352690|CD96	ENSG00000153283|ENST00000352690|CD96	MULTI-MSMS	A375_MHC_IP_R1	1	558.4638671875	2	558.241252	1114.46795	-0.29021	-0.000162	-0.016797	-9.3769E-06	-0.307	-0.00017138	558.2412073581035	42.912	0.81348	42.912	42.487	43.3	0					34	15	3	0	0	0	0.0099679	2	14913	14837;14913		121.53	73.785	1	16893000			5712	6023	3844	3890	5582;5583	5583					-0.08470386843896449
DEWNSNHTI	9	Unmodified	_DEWNSNHTI_					0	0	0		ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96	ENSG00000153283|ENST00000352690|CD96	ENSG00000153283|ENST00000352690|CD96	MULTI-MSMS	A375_MHC_IP_R2	2	558.6407470703125	2	558.241252	1114.46795	-0.66501	-0.00037124	0.078714	4.3941E-05	-0.5863	-0.00032729	558.2412231933874	42.223	0.71306	42.995	42.656	43.369	0.7724					39	13	4	0	0	0	0.02559	1	15645	15645		78.728	38.778	1	16162000			5713	6023	3844	3890	5584	5584					-0.08470386843896449
DEYDFYRSF	9	Unmodified	_DEYDFYRSF_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	A375_MHC_IP_R1	1	621.6580810546875	2	621.259111	1240.50367	-0.5497	-0.00034151	-1.2664	-0.00078676	-1.8161	-0.0011283	621.2585594489608	95.184	0.66305	95.184	94.802	95.465	0					19	12	2	0	0	0	0.21241	1	34986	34986		37.075	27.001	1	2527100			5714	7646	3845	3891	5585	5585					-0.10696349386921611
DEYDFYRSF	9	Unmodified	_DEYDFYRSF_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	A375_MHC_IP_R2	2	621.6588134765625	2	621.259111	1240.50367	-0.47868	-0.00029738	-1.6385	-0.0010179	-2.1172	-0.0013153	621.258280330006	94.673	0.70869	95.418	94.969	95.678	0.74474					20	13	2	0	0	0	0.095851	1	35989	35989		51.415	32.053	1	2741900			5715	7646	3845	3891	5586	5586					-0.10696349386921611
DEYDKVVLKN	10	Unmodified	_DEYDKVVLKN_					0	0	0		ENSG00000125378|ENST00000245451|BMP4	ENSG00000125378|ENST00000245451|BMP4	ENSG00000125378|ENST00000245451|BMP4	MULTI-SECPEP	A375_MHC_IP_R2	2	611.1939086914062	2	611.819335	1221.62412	-0.73824	-0.00045167	0.2717	0.00016623	-0.46654	-0.00028544	611.8194561407372	34.989	0.60569	35.752	35.475	36.081	0.76338					20	11	3	0	0	0	0.93733	1	12594	12594		9.3831	9.3831	1	5838400			5716	3955	3846	3892	5587	5587					0.022170586067204567
DEYDMRDY	8	Unmodified	_DEYDMRDY_					0	0	0			REV__ENSG00000015479|ENST00000394805|MATR3	REV__ENSG00000015479|ENST00000394805|MATR3	MSMS	A375_MHC_IP_R2	2	553.6502685546875	2	553.708396	1105.40224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.366	1	78.109	77.609	78.609	0.74293								0	0	0	0.16876	1	29379	29379		5.7604	1.0044	1		+		5717	16246	3847	3893	5588	5588					-0.1462454408110716
DEYDMRDYY	9	Unmodified	_DEYDMRDYY_					0	0	0			REV__ENSG00000015479|ENST00000394805|MATR3	REV__ENSG00000015479|ENST00000394805|MATR3	MULTI-SECPEP	A375_MHC_IP_R1	1	634.7982177734375	2	635.240061	1268.46557	-0.78073	-0.00049595	-0.40123	-0.00025488	-1.182	-0.00075083	635.2400491655446	95.262	1.0135	95.262	94.853	95.867	0					29	19	3	0	0	0	0.79683	1	35091	35091		5.2307	2.4955	1	3319300	+		5718	16246	3848	3894	5589	5589					-0.15792603363843227
DEYDMRDYY	9	Unmodified	_DEYDMRDYY_					0	0	0			REV__ENSG00000015479|ENST00000394805|MATR3	REV__ENSG00000015479|ENST00000394805|MATR3	MULTI-SECPEP	A375_MHC_IP_R2	2	635.6400756835938	2	635.240061	1268.46557	-0.53706	-0.00034116	-0.60019	-0.00038127	-1.1373	-0.00072243	635.2398912156278	94.656	0.4536	95.401	95.224	95.678	0.74474					18	8	3	0	0	0	0.77834	1	36029	36029		8.5933	3.3626	1	3192900	+		5719	16246	3848	3894	5590	5590					-0.15792603363843227
DEYGETDP	8	Unmodified	_DEYGETDP_					0	0	0		ENSG00000159459|ENST00000290650|UBR1;ENST00000562173.1_1_15:43237529-43242578:-|nuORF	ENSG00000159459|ENST00000290650|UBR1	ENSG00000159459|ENST00000290650|UBR1	MULTI-SECPEP	A375_MHC_IP_R2	2	925.5284423828125	1	925.342148	924.334872	-0.1006	-9.3092E-05	-2.8828	-0.0026676	-2.9834	-0.0027607	925.3407915426021	114.66	0.96887	115.35	114.81	115.78	0.68999					28	18	2	0	0	0	0.97144	1	43310	43310		5.2307	0	1	8040400			5720	6373	3849	3895	5591	5591					-0.13032251020410968
DEYHGEDEFV	10	Unmodified	_DEYHGEDEFV_					0	0	0			REV__tr|U7STX4|U7STX4_FUSNUDUF2207domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01600PE=4SV=1	REV__tr|U7STX4|U7STX4_FUSNUDUF2207domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01600PE=4SV=1	MSMS	A375_MHC_IP_R1	1	620.187744140625	2	620.243657	1238.47276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.185	1	68.185	67.685	68.685	0								0	0	0	0.15435	1	24716	24716		6.7232	0.51738	1		+		5721	28515	3850	3896	5592	5592					-0.13693547491789104
DEYLTYLLLWV	11	Unmodified	_DEYLTYLLLWV_					0	0	0		ENSG00000274764|ENST00000436041|PRAMEF27;ENSG00000204505|ENST00000415919|PRAMEF9;ENSG00000204501|ENST00000376152|PRAMEF15	ENSG00000274764|ENST00000436041|PRAMEF27	ENSG00000274764|ENST00000436041|PRAMEF27	MSMS	A375_MHC_IP_R1	1	476.4850158691406	3	476.58675	1426.73842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.849	1	75.849	75.349	76.349	0								0	0	0	0.16332	1	27637	27637		1.4551	0.24029	1				5722	9449	3851	3897	5593	5593					0.042119483687883985
DEYMLPFEE	9	Unmodified	_DEYMLPFEE_					0	0	0		ENST00000465020.5_1_3:38519799-38524820:+|nuORF;ENSG00000114739|ENST00000352511|ACVR2B;ENST00000495775.1_1_2:148683508-148684840:+|nuORF;nc|ENSG00000121989|P27037-2|ACVR2A;ENSG00000121989|ENST00000241416|ACVR2A	ENST00000465020.5_1_3:38519799-38524820:+|nuORF	ENST00000465020.5_1_3:38519799-38524820:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	391.6248474121094	3	391.498724	1171.47434	0.20811	8.1473E-05	0.30085	0.00011778	0.50896	0.00019926	391.498920008371	97.769	0.56081	97.769	97.54	98.101	0					14	10	2	0	0	0	0.81254	1	35866	35866		0	0	1	1173300			5723	3240	3852	3898	5594	5594					-0.10453629727385305
DEYMLPFEE	9	Unmodified	_DEYMLPFEE_					0	0	0		ENST00000465020.5_1_3:38519799-38524820:+|nuORF;ENSG00000114739|ENST00000352511|ACVR2B;ENST00000495775.1_1_2:148683508-148684840:+|nuORF;nc|ENSG00000121989|P27037-2|ACVR2A;ENSG00000121989|ENST00000241416|ACVR2A	ENST00000465020.5_1_3:38519799-38524820:+|nuORF	ENST00000465020.5_1_3:38519799-38524820:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	391.498724	1171.47434	-0.38182	-0.00014948	-1.2099	-0.00047367	-1.5917	-0.00062315	391.4984966158631	97.132	0.35574	97.888	97.67	98.025	0.75586	0.059371	-0.0008675	NaN	0	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1089400			5724	3240	3852	3898							-0.10453629727385305
DEYQELRDE	9	Unmodified	_DEYQELRDE_					0	0	0			REV__FCGBP|p.G1874D|1|0.19|ENSG00000275395|chr19:39894140-39894140|C/T|missense_variant	REV__FCGBP|p.G1874D|1|0.19|ENSG00000275395|chr19:39894140-39894140|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	598.4306030273438	2	598.756932	1195.49931	-0.90547	-0.00054216	-0.13198	-7.9023E-05	-1.0374	-0.00062118	598.756523496568	58.863	0.76162	59.61	59.185	59.946	0.74714					30	14	3	0	0	0	0.60917	1	22242	22242		25.399	2.2509	1	4100700	+		5725	26623	3853	3899	5595	5595					-0.09061858600466621
DEYRLRLYRRR	11	Unmodified	_DEYRLRLYRRR_					0	0	0			REV__ENSG00000147119|ENST00000276055|CHST7	REV__ENSG00000147119|ENST00000276055|CHST7	MSMS	A375_MHC_IP_R2	2	798.4451293945312	2	798.447497	1594.88044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.111	1	80.856	80.356	81.356	0.74474								0	0	0	0.16353	1	30412	30412		0.35063	0.043601	1		+		5726	19569	3854	3900	5596	5596					0.10679598954334324
DEYRRHWW	8	Unmodified	_DEYRRHWW_					0	0	0		nc|ENSG00000010072|Q9H040-3|SPRTN;nc|ENSG00000010072|Q9H040-2|SPRTN;ENSG00000010072|ENST00000295050|SPRTN	nc|ENSG00000010072|Q9H040-3|SPRTN	nc|ENSG00000010072|Q9H040-3|SPRTN	MULTI-SECPEP	A375_MHC_IP_R2	2	416.3164978027344	3	416.52834	1246.56319	-0.16124	-6.7161E-05	-0.84741	-0.00035297	-1.0087	-0.00042013	416.52792357221745	41.5	0.30284	42.274	42.098	42.401	0.77451					8	5	2	0	0	0	0.972	1	15358	15358		3.9444	3.3176	1	1381500			5727	973	3855	3901	5597	5597					-0.05022988862197053
DEYRYCNEH	9	Unmodified	_DEYRYCNEH_					0	0	0			REV__ENST00000312173.5_1_11:46164605-46165142:+|nuORF	REV__ENST00000312173.5_1_11:46164605-46165142:+|nuORF	MSMS	A375_MHC_IP_R1	1	614.7361450195312	2	614.738019	1227.46149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.74	1	119.74	119.24	120.24	0								0	0	0	0.15486	1	44299	44299		4.756	0.81161	1		+		5728	23513	3856	3902	5598	5598					-0.143146480669202
DEYSGRGIITW	11	Unmodified	_DEYSGRGIITW_					0	0	0		ENST00000483832.5_1_1:155581756-155582119:+|nuORF;nc|ENSG00000125459|Q9BUK6-5|MSTO1;ENST00000494995.5_1_1:155580896-155583988:+|nuORF;ENST00000483734.5_1_1:155580745-155584061:+|nuORF;nc|ENSG00000125459|Q9BUK6-7|MSTO1;nc|ENSG00000125459|Q9BUK6-3|MSTO1;nc|ENSG00000125459|Q9BUK6-2|MSTO1;ENSG00000125459|ENST00000245564|MSTO1	ENST00000483832.5_1_1:155581756-155582119:+|nuORF	ENST00000483832.5_1_1:155581756-155582119:+|nuORF	MSMS	A375_MHC_IP_R1	1	648.7803344726562	2	648.814584	1295.61462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.48	1	90.48	89.98	90.98	0								0	0	0	0.16112	1	33251	33251		12.873	2.7987	1				5729	3966	3857	3903	5599	5599					-0.021367096788026174
DEYVPCVGYY	10	Unmodified	_DEYVPCVGYY_					0	0	0			REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2	REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2	MULTI-SECPEP	A375_MHC_IP_R2	2	603.5469360351562	2	604.25244	1206.49033	-0.36184	-0.00021864	-2.2417	-0.0013546	-2.6036	-0.0015732	604.2512866459892	98.587	0.91447	99.347	99.15	100.06	0.75977					21	17	2	0	0	0	0.92389	1	37513	37513		11.64	3.047	1	1800500	+		5730	21427	3858	3904	5600	5600					-0.10465923490460227
DEYYKPVKW	9	Unmodified	_DEYYKPVKW_					0	0	0		ENSG00000106771|ENST00000374586|TMEM245;nc|ENSG00000106771|Q9H330-3|TMEM245	ENSG00000106771|ENST00000374586|TMEM245	ENSG00000106771|ENST00000374586|TMEM245	MULTI-MSMS	A375_MHC_IP_R1	1	614.705810546875	2	614.305864	1226.59717	-0.28765	-0.0001767	0.25477	0.00015651	-0.032873	-2.0194E-05	614.3058999383469	52.129	0.35313	52.129	52.034	52.387	0					9	6	2	0	0	0	0.095445	1	18555	18555		55.503	43.262	1	2004800			5731	2710	3859	3905	5601	5601					-0.007060052138058381
DEYYKPVKW	9	Unmodified	_DEYYKPVKW_					0	0	0		ENSG00000106771|ENST00000374586|TMEM245;nc|ENSG00000106771|Q9H330-3|TMEM245	ENSG00000106771|ENST00000374586|TMEM245	ENSG00000106771|ENST00000374586|TMEM245	MULTI-MATCH	A375_MHC_IP_R2	2		2	614.305864	1226.59717	-0.8042	-0.00049402	-0.3851	-0.00023657	-1.1893	-0.00073059	614.3056997320326	51.543	0.35523	52.296	52.118	52.473	0.75225	0.083201	-0.00067872	NaN	55.503	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2385700			5732	2710	3859	3905							-0.007060052138058381
DEYYQFCY	8	Unmodified	_DEYYQFCY_					0	0	0		ENST00000503463.5_1_17:46925658-46925868:+|nuORF;nc|ENSG00000136436|Q13137-5|CALCOCO2;nc|ENSG00000136436|Q13137-2|CALCOCO2;ENSG00000136436|ENST00000258947|CALCOCO2;nc|ENSG00000136436|Q13137-3|CALCOCO2;nc|ENSG00000136436|Q13137-4|CALCOCO2	ENST00000503463.5_1_17:46925658-46925868:+|nuORF	ENST00000503463.5_1_17:46925658-46925868:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1130.8125	1	1130.41354	1129.40626	0.072651	8.2126E-05	-1.5613	-0.0017649	-1.4886	-0.0016828	1130.4132195168631	106.59	0.254	107.35	107.24	107.5	0.75977					7	4	2	0	0	0	0.972	1	40296	40296		2.5775	0.51773	1	1747300			5733	4787	3860	3906	5602	5602					-0.15326454587398075
DEYYRQSL	8	Unmodified	_DEYYRQSL_					0	0	0			REV__nc|ENSG00000126883|P35658-2|NUP214	REV__nc|ENSG00000126883|P35658-2|NUP214	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1978149414062	2	537.248546	1072.48254	-1.1545	-0.00062024	0.61952	0.00033284	-0.53496	-0.00028741	537.2489078818757	51.792	0.40816	52.544	52.372	52.78	0.75225					14	7	3	0	0	0	0.97144	1	19435	19435		5.2307	0	1	2266900	+		5734	18405	3861	3907	5603	5603					-0.050803146957377976
DFCITNRSMA	10	Unmodified	_DFCITNRSMA_					0	0	0		nc|ENSG00000170537|Q7Z402-2|TMC7;ENSG00000170537|ENST00000304381|TMC7;ENST00000561963.1_1_16:19045041-19049229:+|nuORF;ENST00000568469.5_1_16:18995385-19051723:+|nuORF	nc|ENSG00000170537|Q7Z402-2|TMC7	nc|ENSG00000170537|Q7Z402-2|TMC7	MULTI-SECPEP	A375_MHC_IP_R1	1	578.6705322265625	2	579.257533	1156.50051	-0.42234	-0.00024465	3.3429	0.0019364	2.9205	0.0016917	579.2592386830994	131.05	0.1539	131.05	130.97	131.13	0					4	2	2	0	0	0	0.90513	1	50532	50532		12.241	1.4167	1	1835300			5735	7519	3862	3908	5604	5604					-0.07147639036907094
DFDTSRVY	8	Unmodified	_DFDTSRVY_					0	0	0			REV__nc|ENSG00000134575|P11117-2|ACP2	REV__nc|ENSG00000134575|P11117-2|ACP2	MULTI-MSMS	A375_MHC_IP_R1	1	502.16455078125	2	501.729989	1001.44543	-0.53411	-0.00026798	0.79513	0.00039894	0.26102	0.00013096	501.7301271788183	27.081	0.5029	27.081	26.878	27.381	0					16	9	2	0	0	0	0.7338	1	8181	8181		24.674	6.5389	1	2641000	+		5736	18790	3863	3909	5605	5605					-0.05523986241530565
DFDTSRVY	8	Unmodified	_DFDTSRVY_					0	0	0			REV__nc|ENSG00000134575|P11117-2|ACP2	REV__nc|ENSG00000134575|P11117-2|ACP2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	501.729989	1001.44543	-0.97712	-0.00049025	0.63085	0.00031652	-0.34626	-0.00017373	502.2320138186997	26.527	0.45898	27.187	27.058	27.517	0.65992	0.053041	-7.6459E-05	NaN	24.674	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3476300	+		5737	18790	3863	3909							-0.05523986241530565
DFEGLLMTHL	10	Unmodified	_DFEGLLMTHL_					0	0	0		nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;ENST00000478380.5_1_9:286487-312499:+|nuORF;ENST00000454469.6_1_9:214976-340322:+|nuORF;ENST00000495184.5_1_9:286487-368312:+|nuORF	nc|ENSG00000107099|Q8NF50-2|DOCK8	nc|ENSG00000107099|Q8NF50-2|DOCK8	MULTI-MSMS	A375_MHC_IP_R2	2	392.9190673828125	3	392.530358	1174.56925	-0.53463	-0.00020986	0.072374	2.8409E-05	-0.46225	-0.00018145	392.53041411874887	22.265	0.45934	22.884	22.643	23.102	0.61932					14	8	2	0	0	0	0.6806	1	7050	7050		8.9762	0	1	539050			5738	2724	3864	3910	5606	5606					-0.011056514655592764
DFELPSPLSY	10	Unmodified	_DFELPSPLSY_					0	0	0		UGT3A1|p.G176E|1|0.21|ENSG00000145626|chr5:35965702-35965702|C/T|missense_variant	UGT3A1|p.G176E|1|0.21|ENSG00000145626|chr5:35965702-35965702|C/T|missense_variant	UGT3A1|p.G176E|1|0.21|ENSG00000145626|chr5:35965702-35965702|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	584.1795654296875	2	584.282054	1166.54956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.288	1	99.288	98.788	99.788	0								0	0	0	0.14925	1	36473	36473		19.257	9.1831	1				5739	30116	3865	3911	5607	5607					-0.027057042046635615
DFELPSPLSY	10	Unmodified	_DFELPSPLSY_					0	0	0		UGT3A1|p.G176E|1|0.21|ENSG00000145626|chr5:35965702-35965702|C/T|missense_variant	UGT3A1|p.G176E|1|0.21|ENSG00000145626|chr5:35965702-35965702|C/T|missense_variant	UGT3A1|p.G176E|1|0.21|ENSG00000145626|chr5:35965702-35965702|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	584.3388671875	2	584.282054	1166.54956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.576	1	86.312	85.812	86.812	0.73601								0	0	0	0.15158	1	32535	32535		14.838	6.9281	1				5740	30116	3865	3911	5608	5608					-0.027057042046635615
DFELPSPLSY	10	Unmodified	_DFELPSPLSY_					0	0	0		UGT3A1|p.G176E|1|0.21|ENSG00000145626|chr5:35965702-35965702|C/T|missense_variant	UGT3A1|p.G176E|1|0.21|ENSG00000145626|chr5:35965702-35965702|C/T|missense_variant	UGT3A1|p.G176E|1|0.21|ENSG00000145626|chr5:35965702-35965702|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	584.63427734375	2	584.282054	1166.54956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.41	1	96.161	95.661	96.661	0.75045								0	0	0	0.15308	1	36244	36244		10.824	4.1008	1				5741	30116	3865	3911	5609	5609					-0.027057042046635615
DFELPSPLSY	10	Unmodified	_DFELPSPLSY_					0	0	0		UGT3A1|p.G176E|1|0.21|ENSG00000145626|chr5:35965702-35965702|C/T|missense_variant	UGT3A1|p.G176E|1|0.21|ENSG00000145626|chr5:35965702-35965702|C/T|missense_variant	UGT3A1|p.G176E|1|0.21|ENSG00000145626|chr5:35965702-35965702|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	584.1903076171875	2	584.282054	1166.54956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.213	1	97.969	97.469	98.469	0.75586								0	0	0	0.14862	1	36900	36900		20.454	4.6064	1				5742	30116	3865	3911	5610	5610					-0.027057042046635615
DFEMCDHDY	9	Unmodified	_DFEMCDHDY_					0	0	0		nc|ENSG00000118513|P10242-12|MYB;nc|ENSG00000118513|P10242-3|MYB;nc|ENSG00000118513|P10242-5|MYB;nc|ENSG00000118513|P10242-11|MYB;nc|ENSG00000118513|P10242-10|MYB;nc|ENSG00000118513|P10242-9|MYB;nc|ENSG00000118513|P10242-2|MYB;nc|ENSG00000118513|P10242|MYB;nc|ENSG00000118513|P10242-6|MYB;nc|ENSG00000118513|P10242-8|MYB;nc|ENSG00000118513|P10242-7|MYB;ENSG00000118513|ENST00000341911|MYB	nc|ENSG00000118513|P10242-12|MYB	nc|ENSG00000118513|P10242-12|MYB	MSMS	A375_MHC_IP_R1	1	587.7060546875	2	587.694432	1173.37431	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.481	1	69.481	68.981	69.981	0								0	0	0	0.15486	1	25214	25214		2.3027	0.24298	1				5743	3547	3866	3912	5611	5611					-0.20544190332861945
DFEYSTQSY	9	Unmodified	_DFEYSTQSY_					0	0	0		nc|ENSG00000134014|Q9H9T3-5|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;ENSG00000134014|ENST00000256398|ELP3;ENST00000522063.1_1_8:27957393-27970048:+|nuORF;ENST00000521938.5_1_8:27950677-27967964:+|nuORF	nc|ENSG00000134014|Q9H9T3-5|ELP3;ENST00000521938.5_1_8:27950677-27967964:+|nuORF	nc|ENSG00000134014|Q9H9T3-5|ELP3	MULTI-MSMS	A375_MHC_IP_R1	1	570.6292724609375	2	570.230019	1138.44548	-0.24276	-0.00013843	-0.15263	-8.7036E-05	-0.39539	-0.00022546	570.2298669891621	72.999	1.3185	72.999	72.524	73.843	0					64	25	4	0	0	0	0.064406	1	26477	26477		58.679	26.373	1	27330000			5744	4542;13018	3867	3913	5612	5612					-0.11820031032175393
DFEYSTQSY	9	Unmodified	_DFEYSTQSY_					0	0	0		nc|ENSG00000134014|Q9H9T3-5|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;ENSG00000134014|ENST00000256398|ELP3;ENST00000522063.1_1_8:27957393-27970048:+|nuORF;ENST00000521938.5_1_8:27950677-27967964:+|nuORF	nc|ENSG00000134014|Q9H9T3-5|ELP3;ENST00000521938.5_1_8:27950677-27967964:+|nuORF	nc|ENSG00000134014|Q9H9T3-5|ELP3	MULTI-MSMS	A375_MHC_IP_R2	2	570.6292724609375	2	570.230019	1138.44548	-0.42816	-0.00024415	-0.16299	-9.2943E-05	-0.59115	-0.00033709	570.2298879442642	72.546	1.1171	73.281	72.821	73.938	0.73541					62	21	5	0	0	0	0.51106	1	27661	27661		19.257	3.4098	1	27883000			5745	4542;13018	3867	3913	5613	5613					-0.11820031032175393
DFFHLFPVR	9	Unmodified	_DFFHLFPVR_					0	0	0			REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	589.7452392578125	2	589.311284	1176.60801	-0.13306	-7.8415E-05	1.2589	0.00074187	1.1258	0.00066345	589.3119808539973	127.95	1.0125	127.95	127.67	128.68	0					33	19	2	0	0	0	0.72985	1	49316	49316		4.3292	0.73274	1	16100000	+		5746	28424	3868	3914	5614	5614					0.026774419511184533
DFFHLFPVR	9	Unmodified	_DFFHLFPVR_					0	0	0			REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	589.311284	1176.60801	-0.61294	-0.00036121	2.147	0.0012652	1.534	0.00090402	589.8138406984255	127.44	1.3716	127.71	127.36	128.73	0.26593	-0.12082	0.00032581	NaN	4.3292	46	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17666000	+		5747	28424	3868	3914							0.026774419511184533
DFFQEEWQWMN	11	Unmodified	_DFFQEEWQWMN_					0	0	0		ZNF471|p.S24F|3|0.16|ENSG00000196263|chr19:56516312-56516312|C/T|missense_variant	ZNF471|p.S24F|3|0.16|ENSG00000196263|chr19:56516312-56516312|C/T|missense_variant	ZNF471|p.S24F|3|0.16|ENSG00000196263|chr19:56516312-56516312|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	780.3140258789062	2	780.316634	1558.61871	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.22	1	110.96	110.46	111.46	0.73692								0	0	0	0.16203	1	41582	41582		8.1555	6.826	1				5748	30220	3869	3915	5615	5615					-0.13824988247415604
DFINWEVTFYY	11	Unmodified	_DFINWEVTFYY_					0	0	0			REV__SCN9A|p.G1577E|1|0.33|ENSG00000169432|chr2:166203999-166203999|C/T|missense_variant	REV__SCN9A|p.G1577E|1|0.33|ENSG00000169432|chr2:166203999-166203999|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	499.4595947265625	3	499.562604	1495.66598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.093	1	53.844	53.344	54.344	0.75105								0	0	0	0.16332	1	20030	20030		1.4551	0	1		+		5749	27925	3870	3916	5616	5616					-0.062023857047734055
DFKSTMTNLK	10	Unmodified	_DFKSTMTNLK_					0	0	0		tr|U7STC7|U7STC7_FUSNUHicB-likeantitoxinoftoxin-antitoxinsystemdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01302PE=4SV=1	tr|U7STC7|U7STC7_FUSNUHicB-likeantitoxinoftoxin-antitoxinsystemdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01302PE=4SV=1	tr|U7STC7|U7STC7_FUSNUHicB-likeantitoxinoftoxin-antitoxinsystemdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01302PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	396.2559509277344	3	395.537513	1183.59071	-0.18302	-7.2393E-05	3.3578	0.0013281	3.1748	0.0012557	395.5387927062014	27.203	0.35768	27.882	27.638	27.996	0.67857					7	4	2	0	0	0	0.77698	1	9297	9297		19.987	7.0582	1	1114300			5750	29681	3871	3917	5617	5617					0.00625733563151698
DFLAEYLF	8	Unmodified	_DFLAEYLF_					0	0	0		ENSG00000140057|ENST00000267584|AK7	ENSG00000140057|ENST00000267584|AK7	ENSG00000140057|ENST00000267584|AK7	MULTI-MSMS	A375_MHC_IP_R1	1	509.7034606933594	2	509.250026	1016.4855	-0.28667	-0.00014599	0.21935	0.0001117	-0.067322	-3.4284E-05	509.2500813102412	72.559	1.1142	72.559	71.917	73.031	0					33	21	2	0	0	0	0.75322	1	26476	26476		19.439	3.6708	1	2883900			5751	5125	3872	3918	5618	5618					-0.02208439570961218
DFLQKLRQKIK	11	Unmodified	_DFLQKLRQKIK_					0	0	0		ENSG00000140650|ENST00000268261|PMM2;nc|ENSG00000140650|O15305-2|PMM2;ENST00000564030.5_1_16:8891706-8900277:+|nuORF	ENSG00000140650|ENST00000268261|PMM2	ENSG00000140650|ENST00000268261|PMM2	MULTI-SECPEP	A375_MHC_IP_R1	1	472.6581726074219	3	472.961033	1415.86127	-0.67686	-0.00032013	0.058372	2.7608E-05	-0.61849	-0.00029252	472.961092916742	30.908	0.20456	30.908	30.754	30.959	0					5	3	2	0	0	0	1.0008	1	9825	9825		2.084	1.578	1	799490			5752	5174	3873	3919	5619	5619					0.16997249610722065
DFLQLHRHDSY	11	Unmodified	_DFLQLHRHDSY_					0	0	0		nc|ENSG00000129219|O14939-3|PLD2;ENST00000575246.6_1_17:4711576-4721404:+|nuORF;nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2	nc|ENSG00000129219|O14939-3|PLD2	nc|ENSG00000129219|O14939-3|PLD2	MSMS	A375_MHC_IP_R1	1	715.7966918945312	2	715.844207	1429.67386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.92	1	124.92	124.42	125.42	0								0	0	0	0.16191	1	47272	47272		8.7454	1.1365	1				5753	4182	3874	3920	5620	5620					-0.023788136646089697
DFLSSVEVQY	10	Unmodified	_DFLSSVEVQY_					0	0	0		FAM83A|p.A68V|1|0.58|ENSG00000147689|chr8:123183059-123183059|C/T|missense_variant	FAM83A|p.A68V|1|0.58|ENSG00000147689|chr8:123183059-123183059|C/T|missense_variant	FAM83A|p.A68V|1|0.58|ENSG00000147689|chr8:123183059-123183059|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	594.184814453125	2	593.784961	1185.55537	-0.76696	-0.00045541	0.42248	0.00025086	-0.34448	-0.00020455	593.7851054601946	67.908	0.75891	67.908	67.552	68.31	0					21	14	2	0	0	0	0.74754	1	24627	24627		29.082	1.4528	1	2048600			5754	13977	3875	3921	5621	5621					-0.02998605692982892
DFLSSVEVQY	10	Unmodified	_DFLSSVEVQY_					0	0	0		FAM83A|p.A68V|1|0.58|ENSG00000147689|chr8:123183059-123183059|C/T|missense_variant	FAM83A|p.A68V|1|0.58|ENSG00000147689|chr8:123183059-123183059|C/T|missense_variant	FAM83A|p.A68V|1|0.58|ENSG00000147689|chr8:123183059-123183059|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	594.1849365234375	2	593.784961	1185.55537	-0.56724	-0.00033682	-0.019658	-1.1672E-05	-0.5869	-0.00034849	593.7848171997078	67.363	0.50728	68.1	67.801	68.308	0.73631					13	9	2	0	0	0	0.78945	1	25539	25539		25.399	12.357	1	2301800			5755	13977	3875	3921	5622	5622					-0.02998605692982892
DFNFISSSS	9	Unmodified	_DFNFISSSS_					0	0	0			REV__ENST00000333219.8_1_13:111373082-111373160:+|nuORF	REV__ENST00000333219.8_1_13:111373082-111373160:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	502.1304016113281	2	502.221997	1002.42944	-0.88673	-0.00044534	0.089174	4.4785E-05	-0.79756	-0.00040055	502.2218470570568	58.005	0.55448	58.754	58.477	59.032	0.74894					13	10	2	0	0	0	0.65721	1	21838	21838		10.824	2.9138	1	1751000	+		5756	23646	3876	3922	5623	5623					-0.07167692478412846
DFNFISSSS	9	Unmodified	_DFNFISSSS_					0	0	0			REV__ENST00000333219.8_1_13:111373082-111373160:+|nuORF	REV__ENST00000333219.8_1_13:111373082-111373160:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	502.221997	1002.42944	-0.45162	-0.00022682	-0.27209	-0.00013665	-0.72371	-0.00036347	502.2218919074155	58.587	0.50778	58.587	58.379	58.887	0	-0.083654	-9.5468E-05	NaN	10.824	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	843770	+		5757	23646	3876	3922							-0.07167692478412846
DFNFISSSS	9	Unmodified	_DFNFISSSS_					0	0	0			REV__ENST00000333219.8_1_13:111373082-111373160:+|nuORF	REV__ENST00000333219.8_1_13:111373082-111373160:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	502.221997	1002.42944	-0.88673	-0.00044534	0.089174	4.4785E-05	-0.79756	-0.00040055	502.2218470570568	58.005	0.55448	58.754	58.477	59.032	0.74894	0.083654	0.0002674	NaN	10.824	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1751000	+		5758	23646	3876	3922							-0.07167692478412846
DFSELISQY	9	Unmodified	_DFSELISQY_					0	0	0		ENSG00000036828|ENST00000639785|CASR;nc|ENSG00000036828|P41180-2|CASR	ENSG00000036828|ENST00000639785|CASR	ENSG00000036828|ENST00000639785|CASR	MULTI-SECPEP	A375_MHC_IP_R2	2	551.6581420898438	2	551.258579	1100.50261	-0.69905	-0.00038536	-0.42828	-0.00023609	-1.1273	-0.00062145	551.2583189098706	92.324	0.50598	93.063	92.684	93.19	0.73902					16	9	2	0	0	0	0.50702	1	35123	35123		32.305	18.399	1	1442000			5759	1142	3877	3923	5624	5624					-0.043625637557852315
DFSELISQY	9	Unmodified	_DFSELISQY_					0	0	0		ENSG00000036828|ENST00000639785|CASR;nc|ENSG00000036828|P41180-2|CASR	ENSG00000036828|ENST00000639785|CASR	ENSG00000036828|ENST00000639785|CASR	MULTI-MATCH	A375_MHC_IP_R1	1		2	551.258579	1100.50261	-0.29765	-0.00016408	-0.63714	-0.00035123	-0.9348	-0.00051532	551.2582560966017	92.781	0.5589	92.781	92.515	93.074	0	-0.14112	-9.0131E-05	NaN	39.957	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1365500			5760	1142	3877	3923							-0.043625637557852315
DFSRCSQNCD	10	Unmodified	_DFSRCSQNCD_					0	0	0		ENST00000523272.1_1_22:22380511-22380834:+|nuORF	ENST00000523272.1_1_22:22380511-22380834:+|nuORF	ENST00000523272.1_1_22:22380511-22380834:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	587.1478881835938	2	587.71623	1173.41791	-0.86783	-0.00051004	0.39064	0.00022959	-0.47719	-0.00028045	587.7153308910824	71.788	0.45553	72.522	72.314	72.77	0.73421					10	8	2	0	0	0	0.91909	1	27248	27248		13.906	2.4113	1	1687500			5761	13039	3878	3924	5625	5625					-0.1618658083571063
DFSSLYPSI	9	Unmodified	_DFSSLYPSI_					0	0	0		ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	MULTI-SECPEP	A375_MHC_IP_R2	2	515.1736450195312	2	514.75039	1027.48623	-0.64982	-0.0003345	0.59214	0.0003048	-0.057688	-2.9695E-05	514.7506048526576	98.851	0.35494	99.611	99.403	99.758	0.75977					9	6	2	0	0	0	0.62767	1	37549	37549		7.2892	0.56607	1	1087100			5762	1335	3879	3925	5626	5626					-0.02641644921891384
DFTQDLGW	8	Unmodified	_DFTQDLGW_					0	0	0		ENST00000497857.5_1_2:218899814-218900102:+|nuORF	ENST00000497857.5_1_2:218899814-218900102:+|nuORF	ENST00000497857.5_1_2:218899814-218900102:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	490.6817321777344	2	491.219257	980.423961	-0.81281	-0.00039927	-0.55832	-0.00027426	-1.3711	-0.00067353	491.21905129606426	56.276	0.4073	57.026	56.796	57.203	0.75015					13	7	2	0	0	0	0.95423	1	21323	21323		12.532	1.7076	1	1255600			5763	12750	3880	3926	5627	5627					-0.06703371270236858
DFTTLKWGNH	10	Unmodified	_DFTTLKWGNH_					0	0	0			REV__TNN|p.F1210L|1|0.19|ENSG00000120332|chr1:175144419-175144419|T/C|missense_variant	REV__TNN|p.F1210L|1|0.19|ENSG00000120332|chr1:175144419-175144419|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	610.5838623046875	2	609.798737	1217.58292	-0.46668	-0.00028458	-1.4671	-0.00089463	-1.9338	-0.0011792	609.7982111707391	73.014	0.91508	73.749	73.379	74.294	0.73541					23	17	2	0	0	0	0.70651	1	27807	27807		9.3831	2.0939	1	1264600	+		5764	28141	3881	3927	5628	5628					-0.01716657642100472
DFYSIIEQY	9	Unmodified	_DFYSIIEQY_					0	0	0			REV__ENSG00000147459|ENST00000276440|DOCK5	REV__ENSG00000147459|ENST00000276440|DOCK5	MULTI-SECPEP	A375_MHC_IP_R1	1	589.6731567382812	2	589.274229	1176.53391	-0.12045	-7.0981E-05	-0.91436	-0.00053881	-1.0348	-0.00060979	589.27341532422	111.48	0.45917	111.48	111.26	111.72	0					15	8	2	0	0	0	0.14422	1	40878	40878		36.127	0	1	1842900	+		5765	19589	3882	3928	5629	5629					-0.04729990721716604
DGCSECGGSF	10	Unmodified	_DGCSECGGSF_					0	0	0		ENSG00000105497|ENST00000262259|ZNF175	ENSG00000105497|ENST00000262259|ZNF175	ENSG00000105497|ENST00000262259|ZNF175	MSMS	A375_MHC_IP_R1	1	481.14837646484375	2	481.154942	960.295332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.548	1	32.548	32.048	33.048	0								0	0	0	0.15531	1	10526	10526		3.5965	1.019	1				5766	2611	3883	3929	5630	5630					-0.18640417567121403
DGCSECGGSF	10	Unmodified	_DGCSECGGSF_					0	0	0		ENSG00000105497|ENST00000262259|ZNF175	ENSG00000105497|ENST00000262259|ZNF175	ENSG00000105497|ENST00000262259|ZNF175	MSMS	A375_MHC_IP_R1	1	481.1720275878906	2	481.154942	960.295332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.65	1	32.65	32.15	33.15	0								0	0	0	0.15531	1	10568	10568		3.5965	1.019	1				5767	2611	3883	3929	5631	5631					-0.18640417567121403
DGEEEEDCIQ	10	Unmodified	_DGEEEEDCIQ_					0	0	0		nc|ENSG00000108840|Q9UQL6-3|HDAC5;ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-2|HDAC5	nc|ENSG00000108840|Q9UQL6-3|HDAC5	nc|ENSG00000108840|Q9UQL6-3|HDAC5	MSMS	A375_MHC_IP_R1	1	583.7319946289062	2	583.711333	1165.40811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.763	1	50.763	50.263	51.263	0								0	0	0	0.15435	1	17996	17996		6.7232	0	1				5768	2843	3884	3930	5632	5632					-0.16797490360113443
DGEILFSSEP	10	Unmodified	_DGEILFSSEP_					0	0	0			REV__ENST00000470582.1_1_2:96799698-96803509:-|nuORF	REV__ENST00000470582.1_1_2:96799698-96803509:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	547.6558837890625	2	547.256037	1092.49752	-0.93138	-0.0005097	0.79954	0.00043756	-0.13184	-7.2149E-05	547.2562814895954	97.5	0.4576	98.256	98.025	98.483	0.75586					15	8	2	0	0	0	0.62155	1	37002	37002		19.257	19.257	1	2296600	+		5769	15468	3885	3931	5633	5633					-0.04502867618407436
DGEWRRLPWW	10	Unmodified	_DGEWRRLPWW_					0	0	0		TG|p.G1548W|1|0.26|ENSG00000042832|chr8:132923451-132923451|G/T|missense_variant	TG|p.G1548W|1|0.26|ENSG00000042832|chr8:132923451-132923451|G/T|missense_variant	TG|p.G1548W|1|0.26|ENSG00000042832|chr8:132923451-132923451|G/T|missense_variant	MSMS	A375_MHC_IP_R1	1	467.6297912597656	3	467.566794	1399.67855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.381	1	56.381	55.881	56.881	0								0	0	0	0.15308	1	20196	20196		6.1918	0.32371	1				5770	29332	3886	3932	5634	5634					-0.005298847312133148
DGFQPSRSIIF	11	Unmodified	_DGFQPSRSIIF_					0	0	0		ENSG00000072274|ENST00000360110|TFRC;ENST00000464368.1_1_3:195789435-195792419:-|nuORF	ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	MULTI-SECPEP	A375_MHC_IP_R1	1	634.2267456054688	2	633.827495	1265.64044	-0.66398	-0.00042085	-0.14908	-9.4488E-05	-0.81305	-0.00051534	633.8273942416535	99.255	0.55911	99.255	98.914	99.473	0					22	10	3	0	0	0	0.66194	1	36441	36441		44.392	21.656	1	2339900			5771	1534	3887	3933	5635	5635					0.018241845634747733
DGFQPSRSIIF	11	Unmodified	_DGFQPSRSIIF_					0	0	0		ENSG00000072274|ENST00000360110|TFRC;ENST00000464368.1_1_3:195789435-195792419:-|nuORF	ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	MULTI-SECPEP	A375_MHC_IP_R2	2	633.687255859375	2	633.827495	1265.64044	-0.7702	-0.00048817	0.70926	0.00044955	-0.060942	-3.8627E-05	634.3298349280245	98.467	0.71141	99.227	98.793	99.505	0.75977					22	13	3	0	0	0	0.87221	1	37365	37365		28.234	11.121	1	2539500			5772	1534	3887	3933	5636	5636					0.018241845634747733
DGFYFEYY	8	Unmodified	_DGFYFEYY_					0	0	0		ENSG00000122482|ENST00000337393|ZNF644;nc|ENSG00000122482|Q9H582-2|ZNF644	ENSG00000122482|ENST00000337393|ZNF644	ENSG00000122482|ENST00000337393|ZNF644	MULTI-MSMS	A375_MHC_IP_R2	2	552.6712646484375	2	552.221465	1102.42838	-0.58947	-0.00032552	0.034653	1.9136E-05	-0.55482	-0.00030638	552.221279102614	46.833	0.60992	47.595	47.361	47.97	0.76128					21	11	2	0	0	0	0.77603	1	17651	17651		9.3474	1.4373	1	5888300			5773	3782	3888	3934	5637	5637					-0.11873906847336002
DGGTLYAAWI	10	Unmodified	_DGGTLYAAWI_					0	0	0			REV__ENSG00000176920|ENST00000425340|FUT2	REV__ENSG00000176920|ENST00000425340|FUT2	MULTI-MSMS	A375_MHC_IP_R1	1	533.6998901367188	2	533.763832	1065.51311	-0.62113	-0.00033153	-0.079293	-4.2324E-05	-0.70042	-0.00037386	533.7637969987376	100.78	1.0133	100.78	100.43	101.45	0					29	19	2	0	0	0	0.43117	1	37047	37047		32.305	6.9062	1	4913200	+		5774	21428	3889	3935	5638	5638					-0.017025363107222802
DGHIKIADFG	10	Unmodified	_DGHIKIADFG_					0	0	0		ENSG00000163932|ENST00000330452|PRKCD;nc|ENSG00000163932|Q05655-2|PRKCD;nc|ENSG00000065675|Q04759-3|PRKCQ;nc|ENSG00000065675|Q04759-2|PRKCQ;ENSG00000065675|ENST00000263125|PRKCQ;nc|ENSG00000110931|Q96RR4-7|CAMKK2;nc|ENSG00000110931|Q96RR4-6|CAMKK2;nc|ENSG00000110931|Q96RR4-5|CAMKK2;nc|ENSG00000110931|Q96RR4-2|CAMKK2;nc|ENSG00000110931|Q96RR4-3|CAMKK2;nc|ENSG00000110931|Q96RR4-4|CAMKK2;ENSG00000110931|ENST00000404169|CAMKK2	ENSG00000163932|ENST00000330452|PRKCD;nc|ENSG00000110931|Q96RR4-7|CAMKK2	ENSG00000163932|ENST00000330452|PRKCD	MULTI-SECPEP	A375_MHC_IP_R2	2	358.58538818359375	3	358.185579	1071.53491	-0.24907	-8.9214E-05	-0.2751	-9.8535E-05	-0.52417	-0.00018775	358.18542420611686	41.666	1.1212	42.441	41.946	43.067	0.77451					36	21	2	0	0	0	0.91773	1	15526	15526		13.519	3.9747	1	2214300			5775	6746;14541	3890	3936	5639	5639					0.0020026843783398363
DGHMCDFC	8	Unmodified	_DGHMCDFC_					0	0	0			REV__ENSG00000146809|ENST00000451215|ASB15	REV__ENSG00000146809|ENST00000451215|ASB15	MSMS	A375_MHC_IP_R1	1	464.1505126953125	2	464.143323	926.272094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.709	1	39.709	39.209	40.209	0								0	0	0	0.16876	1	13596	13596		5.2307	2.6532	1		+		5776	19550	3891	3937	5640	5640					-0.1939913488545244
DGHMCDFC	8	Unmodified	_DGHMCDFC_					0	0	0			REV__ENSG00000146809|ENST00000451215|ASB15	REV__ENSG00000146809|ENST00000451215|ASB15	MSMS	A375_MHC_IP_R2	2	464.1502685546875	2	464.143323	926.272094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.788	1	39.562	39.062	40.062	0.77451								0	0	0	0.16876	1	14296	14296		5.2307	2.6532	1		+		5777	19550	3891	3937	5641	5641					-0.1939913488545244
DGHPGDRAGYS	11	Unmodified	_DGHPGDRAGYS_					0	0	0			REV__nc|ENSG00000004534|P78332-3|RBM6	REV__nc|ENSG00000004534|P78332-3|RBM6	MSMS	A375_MHC_IP_R2	2	566.1774291992188	2	566.244326	1130.4741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.785	1	42.56	42.06	43.06	0.77451								0	0	0	0.15016	1	15519	15519		20.415	0.97554	1		+		5778	16098	3892	3938	5642	5642					-0.0859186861237049
DGHQKIQTGE	10	Unmodified	_DGHQKIQTGE_					0	0	0		ENSG00000186230|ENST00000334181|ZNF749	ENSG00000186230|ENST00000334181|ZNF749	ENSG00000186230|ENST00000334181|ZNF749	MSMS	A375_MHC_IP_R2	2	556.7072143554688	2	556.770177	1111.5258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.11	1	126.41	125.91	126.91	0.2951								0	0	0	0.15391	1	49317	49317		8.1555	0.24537	1				5779	8734	3893	3939	5643	5643					-0.025501249184799235
DGIEFDDDETL	11	Unmodified	_DGIEFDDDETL_					0	0	0			REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	MSMS	A375_MHC_IP_R2	2	634.7393188476562	2	634.76188	1267.50921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.48	1	110.23	109.73	110.73	0.74684								0	0	0	0.16179	1	41315	41315		9.3831	0.63772	1		+		5780	15922	3894	3940	5644	5644					-0.11384715385770505
DGKAAINLAKL	11	Unmodified	_DGKAAINLAKL_					0	0	0		ENSG00000148358|ENST00000347136|GPR107;ENST00000493417.5_1_9:132839594-132891041:+|nuORF	ENSG00000148358|ENST00000347136|GPR107	ENSG00000148358|ENST00000347136|GPR107	MULTI-MSMS	A375_MHC_IP_R2	2	371.9176940917969	3	371.892396	1112.65536	0.38706	0.00014394	-0.0032293	-1.201E-06	0.38383	0.00014274	371.8926004684637	27.139	0.66574	27.818	27.433	28.098	0.67857					17	12	2	0	0	0	0.73189	1	9172	9172		3.5927	0	1	6821500			5781	5737	3895	3941	5645	5645					0.10353676431441272
DGKKTVRFF	9	Unmodified	_DGKKTVRFF_					0	0	0			REV__ENSG00000179776|ENST00000341529|CDH5	REV__ENSG00000179776|ENST00000341529|CDH5	MULTI-MSMS	A375_MHC_IP_R2	2	366.941650390625	3	366.541586	1096.60293	-0.18339	-6.722E-05	0.25612	9.3878E-05	0.072726	2.6657E-05	366.5417091135083	49.595	0.4565	50.352	50.145	50.602	0.75737					18	8	3	0	0	0	0.69884	1	18668	18668		7.1017	0.90987	1	2564600	+		5782	21579	3896	3942	5646	5646					0.058491380885243416
DGKKTVRFF	9	Unmodified	_DGKKTVRFF_					0	0	0			REV__ENSG00000179776|ENST00000341529|CDH5	REV__ENSG00000179776|ENST00000341529|CDH5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	366.541586	1096.60293	-0.18339	-6.722E-05	0.25612	9.3878E-05	0.072726	2.6657E-05	366.5417091135083	49.595	0.4565	50.352	50.145	50.602	0.75737	-0.15473	3.6964E-05	NaN	7.1017	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2564600	+		5783	21579	3896	3942							0.058491380885243416
DGLDLWGTV	9	Unmodified	_DGLDLWGTV_					0	0	0		ATP13A5|p.S532Lfs*22|1|0.06|ENSG00000187527|chr3:193324943-193324944|CT/-|frameshift_variant;ENSG00000187527|ENST00000342358|ATP13A5	ATP13A5|p.S532Lfs*22|1|0.06|ENSG00000187527|chr3:193324943-193324944|CT/-|frameshift_variant	ATP13A5|p.S532Lfs*22|1|0.06|ENSG00000187527|chr3:193324943-193324944|CT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	488.6424255371094	2	488.242732	974.470912	-0.13654	-6.6664E-05	-0.26324	-0.00012853	-0.39978	-0.00019519	488.24245853584927	71.265	0.66386	71.265	70.902	71.565	0					20	12	2	0	0	0	0.098973	1	25857	25857		50.855	10.898	1	2662900			5784	206	3897	3943	5647	5647					-0.017345117190757264
DGLDLWGTV	9	Unmodified	_DGLDLWGTV_					0	0	0		ATP13A5|p.S532Lfs*22|1|0.06|ENSG00000187527|chr3:193324943-193324944|CT/-|frameshift_variant;ENSG00000187527|ENST00000342358|ATP13A5	ATP13A5|p.S532Lfs*22|1|0.06|ENSG00000187527|chr3:193324943-193324944|CT/-|frameshift_variant	ATP13A5|p.S532Lfs*22|1|0.06|ENSG00000187527|chr3:193324943-193324944|CT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	488.6424255371094	2	488.242732	974.470912	-0.55408	-0.00027052	0.014627	7.1413E-06	-0.53945	-0.00026338	488.2426995247353	70.553	0.50577	71.287	70.997	71.503	0.73421					17	9	2	0	0	0	0.098973	1	26736	26736		50.855	10.898	1	3530700			5785	206	3897	3943	5648	5648					-0.017345117190757264
DGMGYGDY	8	Unmodified	_DGMGYGDY_					0	0	0		ENST00000529437.1_1_10:102286710-102289623:-|nuORF;ENST00000466088.5_1_10:102286131-102289614:-|nuORF;nc|ENSG00000255339|O95169-2|NDUFB8;ENSG00000166136|ENST00000299166|NDUFB8;nc|ENSG00000255339|O95169-3|NDUFB8	ENST00000529437.1_1_10:102286710-102289623:-|nuORF	ENST00000529437.1_1_10:102286710-102289623:-|nuORF	MSMS	A375_MHC_IP_R2	2	439.1500244140625	2	439.155268	876.295984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.246	1	59.993	59.493	60.493	0.74714								0	0	0	0.16876	1	22423	22423		5.7604	2.8712	1				5786	7026	3898	3944	5649	5649					-0.14711254855774314
DGNNEAAL	8	Unmodified	_DGNNEAAL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MSMS	A375_MHC_IP_R2	2	402.1551818847656	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.14	1	62.883	62.383	63.383	0.74263								0	0	0	0.16876	1	23553	23553		2.8892	0	1				5787	3636	3899	3945	5650	5650					-0.06336803855481321
DGQQILQK	8	Unmodified	_DGQQILQK_					0	0	0			REV__ENST00000492803.1_1_13:73372062-73409389:+|nuORF	REV__ENST00000492803.1_1_13:73372062-73409389:+|nuORF	MSMS	A375_MHC_IP_R2	2	465.1693420410156	2	465.256174	928.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.76	1	114.47	113.97	114.97	0.70985								0	0	0	0.16876	1	42899	42899		4.756	0	1		+		5788	16806	3900	3946	5651	5651					0.030685968921034146
DGQVSYRLS	9	Unmodified	_DGQVSYRLS_					0	0	0		ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	A375_MHC_IP_R1	1	513.66162109375	2	512.756538	1023.49852	-0.45915	-0.00023543	0.8718	0.00044702	0.41265	0.00021159	512.756193944383	40.714	0.70818	40.714	40.355	41.063	0					28	13	4	0	0	0	0.4867	1	13991	13991		20.454	1.1966	1	3610500			5789	1838	3901	3947	5652	5652					-0.012286084588595259
DGRTAQQDR	9	Unmodified	_DGRTAQQDR_					0	0	0			REV__chr12:122982538-122982624|369|66.53|0.0|22.67|+|2|ARL6IP4,None|1	REV__chr12:122982538-122982624|369|66.53|0.0|22.67|+|2|ARL6IP4,None|1	MSMS	A375_MHC_IP_R2	2	523.81591796875	2	523.752318	1045.49008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.239	1	22.858	22.358	23.358	0.61932								0	0	0	0.15486	1	7051	7051		4.3292	0.38484	1		+		5790	15685	3902	3948	5653	5653					-0.030841623754668035
DGRWRRWRRRR	11	Unmodified	_DGRWRRWRRRR_					0	0	0		ENST00000396912.1_1_7:5085705-5085882:+|nuORF	ENST00000396912.1_1_7:5085705-5085882:+|nuORF	ENST00000396912.1_1_7:5085705-5085882:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	553.0487670898438	3	552.649068	1654.92537	-0.74722	-0.00041295	-0.20949	-0.00011577	-0.95671	-0.00052872	552.6489570181332	67.598	0.50946	68.334	68.052	68.562	0.73631					23	9	3	0	0	0	0.73924	1	25623	25623		0.094841	0.094841	1	4634600			5791	11497	3903	3949	5654	5654					0.1241088733088418
DGSEVYKAIAD	11	Unmodified	_DGSEVYKAIAD_					0	0	0			REV__tr|U7T2T3|U7T2T3_FUSNUGlutaconateCoA-transferase,subunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00406PE=4SV=1	REV__tr|U7T2T3|U7T2T3_FUSNUGlutaconateCoA-transferase,subunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00406PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	584.6806640625	2	584.280043	1166.54553	-0.62068	-0.00036265	2.1157	0.0012362	1.4951	0.00087353	584.2810412139467	38.227	0.40775	38.227	38.016	38.423	0					11	7	2	0	0	0	0.98673	1	12973	12973		10.151	0	1	2979000	+		5792	28757	3904	3950	5655	5655					-0.03107793698382011
DGSQVTMTV	9	Unmodified	_DGSQVTMTV_					0	0	0		nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;ENST00000514623.1_1_3:123428573-123453020:-|nuORF	nc|ENSG00000065534|Q15746-3|MYLK	nc|ENSG00000065534|Q15746-3|MYLK	MULTI-SECPEP	A375_MHC_IP_R2	2	468.4434814453125	2	469.2184	936.422247	-0.59546	-0.0002794	0.85038	0.00039902	0.25492	0.00011961	469.21878877236577	73.943	0.71278	74.681	74.195	74.907	0.73752					20	13	2	0	0	0	0.71541	1	28115	28115		7.2892	5.6366	1	2424000			5793	1387	3905	3951	5656	5656					-0.04850748350474987
DGTMKMWNY	9	Unmodified	_DGTMKMWNY_					0	0	0		ENSG00000215529|ENST00000400522|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	MULTI-SECPEP	A375_MHC_IP_R1	1	382.89666748046875	3	382.49666	1144.46815	0.14384	5.5017E-05	-0.39178	-0.00014986	-0.24795	-9.4838E-05	382.4966375252772	27.053	0.80529	27.053	26.828	27.634	0					41	15	4	0	0	0	0.75466	1	8127	8127		2.4985	0	1	42268000			5794	9647	3906	3952	5657	5657					-0.09830426439907569
DGVKNWPSL	9	Unmodified	_DGVKNWPSL_					0	0	0			REV__tr|U7SPA6|U7SPA6_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01791PE=3SV=1	REV__tr|U7SPA6|U7SPA6_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01791PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9525451660156	2	508.263999	1014.51345	-0.72878	-0.00037041	0.34222	0.00017394	-0.38656	-0.00019647	508.26402090211263	75.941	0.7624	76.681	76.282	77.045	0.74052					24	14	2	0	0	0	0.58271	1	28704	28704		6.2058	0	1	8344200	+		5795	28353	3907	3953	5658	5658					0.006768834091303688
DGWADRYDV	9	Unmodified	_DGWADRYDV_					0	0	0		nc|ENSG00000168959|P41594-3|GRM5;nc|ENSG00000168959|P41594-2|GRM5;ENSG00000168959|ENST00000305447|GRM5	nc|ENSG00000168959|P41594-3|GRM5	nc|ENSG00000168959|P41594-3|GRM5	MULTI-MSMS	A375_MHC_IP_R2	2	549.6538696289062	2	548.738345	1095.46214	-1.2372	-0.00067892	0.4181	0.00022943	-0.81914	-0.00044949	548.7385054991317	25.56	0.76391	26.22	25.838	26.602	0.65992					36	14	4	0	0	0	0.65721	1	8513	8513		10.824	0.64053	1	43294000			5796	7366	3908	3954	5659	5659					-0.08177485355577119
DGWDRTSQV	9	Unmodified	_DGWDRTSQV_					0	0	0		nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6	nc|ENSG00000139505|Q9Y217-2|MTMR6	nc|ENSG00000139505|Q9Y217-2|MTMR6	MULTI-SECPEP	A375_MHC_IP_R1	1	531.66650390625	2	532.243795	1062.47304	-0.64875	-0.00034529	1.144	0.00060889	0.49525	0.00026359	532.2443325047832	55.019	0.35494	55.019	54.822	55.177	0					9	6	2	0	0	0	0.67483	1	19597	19597		14.838	0	1	808280			5797	5080	3909	3955	5660	5660					-0.055700829812849406
DGYDDDNCDY	10	Unmodified	_DGYDDDNCDY_					0	0	0		DYRK1A|p.Y136C|1|0.34|ENSG00000157540|chr21:37480717-37480717|A/G|missense_variant	DYRK1A|p.Y136C|1|0.34|ENSG00000157540|chr21:37480717-37480717|A/G|missense_variant	DYRK1A|p.Y136C|1|0.34|ENSG00000157540|chr21:37480717-37480717|A/G|missense_variant	MSMS	A375_MHC_IP_R2	2	597.7254028320312	2	597.680033	1193.34551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.58	1	107.34	106.84	107.84	0.75977								0	0	0	0.15628	1	40282	40282		0.45834	0	1				5798	812	3910	3956	5661	5661					-0.24342636428286824
DGYEPPVQESV	11	Unmodified	_DGYEPPVQESV_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	A375_MHC_IP_R1	1	610.677001953125	2	610.2775	1218.54045	-0.69015	-0.00042118	0.81679	0.00049847	0.12664	7.7283E-05	610.2774470350562	67.656	0.60678	67.656	67.348	67.955	0					26	11	3	0	0	0	0.36994	1	24493	24493		41.347	30.548	1	2869100			5799	5559	3911	3957	5662	5662					-0.060080975609935194
DGYEPPVQESV	11	Unmodified	_DGYEPPVQESV_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	A375_MHC_IP_R2	2	610.6774291992188	2	610.2775	1218.54045	-0.51637	-0.00031513	0.3131	0.00019108	-0.20327	-0.00012405	610.2770178831166	67.131	0.65968	67.868	67.495	68.155	0.73631					26	12	3	0	0	0	0.36994	1	25446	25446		41.347	33.738	1	2747800			5800	5559	3911	3957	5663	5663					-0.060080975609935194
DGYFENSSL	9	Unmodified	_DGYFENSSL_					0	0	0		MUC4|p.P4519S|1|0.3|ENSG00000145113|chr3:195766726-195766726|G/A|missense_variant	MUC4|p.P4519S|1|0.3|ENSG00000145113|chr3:195766726-195766726|G/A|missense_variant	MUC4|p.P4519S|1|0.3|ENSG00000145113|chr3:195766726-195766726|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	516.164794921875	2	516.219454	1030.42436	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.044	1	55.044	54.544	55.544	0								0	0	0	0.15486	1	19675	19675		7.9102	0.62092	1				5801	14423	3912	3958	5664	5664					-0.08963996341026359
DHAQTVILY	9	Unmodified	_DHAQTVILY_					0	0	0		PRKCI|p.P218L|1|0.35|ENSG00000163558|chr3:170275235-170275235|C/T|missense_variant	PRKCI|p.P218L|1|0.35|ENSG00000163558|chr3:170275235-170275235|C/T|missense_variant	PRKCI|p.P218L|1|0.35|ENSG00000163558|chr3:170275235-170275235|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	530.6818237304688	2	530.277106	1058.53966	-0.44216	-0.00023446	-0.32264	-0.00017109	-0.7648	-0.00040555	530.2770146430049	70.372	0.91757	70.372	69.933	70.85	0					56	17	4	0	0	0	0.13797	1	25685	25685		43.858	3.901	1	72211000			5802	15229	3913	3959	5665	5665					0.01273152580643
DHDEHSTF	8	Unmodified	_DHDEHSTF_					0	0	0			REV__ENSG00000189091|ENST00000302516|SF3B3	REV__ENSG00000189091|ENST00000302516|SF3B3	MSMS	A375_MHC_IP_R2	2	494.1502380371094	2	494.193771	986.372988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.214	1	59.962	59.462	60.462	0.74714								0	0	0	0.16876	1	22410	22410		14.582	4.3983	1		+		5803	22139	3914	3960	5666	5666					-0.12074320315070963
DHDYIPREI	9	Unmodified	_DHDYIPREI_					0	0	0		nc|ENSG00000095110|Q8N323-2|NXPE1;ENSG00000095110|ENST00000534921|NXPE1	nc|ENSG00000095110|Q8N323-2|NXPE1	nc|ENSG00000095110|Q8N323-2|NXPE1	MULTI-SECPEP	A375_MHC_IP_R1	1	386.6217346191406	3	386.524372	1156.55129	0.30386	0.00011745	-0.35312	-0.00013649	-0.049264	-1.9042E-05	386.52426616265933	35.017	0.40794	35.017	34.81	35.218	0					13	7	2	0	0	0	0.79429	1	11602	11602		7.1017	4.3665	1	2653200			5804	2035	3915	3961	5667	5667					-0.020726503960531772
DHFVHMLNDP	10	Unmodified	_DHFVHMLNDP_					0	0	0			REV__ENSG00000144647|ENST00000344697|POMGNT2	REV__ENSG00000144647|ENST00000344697|POMGNT2	MULTI-SECPEP	A375_MHC_IP_R2	2	408.6241455078125	3	408.853724	1223.53934	-0.41087	-0.00016799	1.5851	0.00064809	1.1743	0.0004801	408.85421676504893	25.054	0.46052	25.697	25.516	25.976	0.64368					11	8	2	0	0	0	0.93961	1	8319	8319		1.5923	0	1	1308500	+		5805	19436	3916	3962	5668	5668					-0.06348590410880206
DHGCWADGERL	11	Unmodified	_DHGCWADGERL_					0	0	0		ENST00000462859.5_1_10:124615225-124639145:-|nuORF	ENST00000462859.5_1_10:124615225-124639145:-|nuORF	ENST00000462859.5_1_10:124615225-124639145:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	420.2440185546875	3	420.1805	1257.51967	0.082473	3.4653E-05	-0.17474	-7.3423E-05	-0.09227	-3.877E-05	420.5154805161289	61.661	0.81771	61.661	61.279	62.097	0					23	15	2	0	0	0	0.99331	1	22271	22271		4.4062	2.1534	1	12214000			5806	12207	3917	3963	5669	5669					-0.09878966421661062
DHILGFGED	9	Unmodified	_DHILGFGED_					0	0	0		HHIP|p.G549D|1|0.42|ENSG00000164161|chr4:144715398-144715398|G/A|missense_variant	HHIP|p.G549D|1|0.42|ENSG00000164161|chr4:144715398-144715398|G/A|missense_variant	HHIP|p.G549D|1|0.42|ENSG00000164161|chr4:144715398-144715398|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	502.7049560546875	2	501.729989	1001.44543	-0.97321	-0.00048829	0.78478	0.00039375	-0.18842	-9.4537E-05	501.7300991210158	57.272	1.4726	58.021	57.407	58.879	0.74894					61	28	3	0	0	0	0.64808	1	21800	21800		11.64	0	1	9674900			5807	14123	3918	3964	5670	5670					-0.055239862415191965
DHLDFYSSHI	10	Unmodified	_DHLDFYSSHI_					0	0	0			REV__ENSG00000198837|ENST00000361217|DENND4B	REV__ENSG00000198837|ENST00000361217|DENND4B	MULTI-SECPEP	A375_MHC_IP_R2	2	617.6795654296875	2	617.280377	1232.5462	-0.52525	-0.00032423	-1.0648	-0.00065727	-1.59	-0.00098149	617.2799708354859	43.275	0.35522	44.048	43.876	44.231	0.7724					14	6	3	0	0	0	0.92957	1	16153	16153		10.074	0	1	3063200	+		5808	22427	3919	3965	5671	5671					-0.0607695425867405
DHLPYFIKW	9	Unmodified	_DHLPYFIKW_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	MULTI-SECPEP	A375_MHC_IP_R2	2	406.259033203125	3	406.88172	1217.62333	-0.5134	-0.00020889	0.76036	0.00030938	0.24696	0.00010048	407.21562383058364	33.772	0.40475	34.525	34.348	34.753	0.75225					9	7	2	0	0	0	0.76827	1	12092	12092		4.1895	0	1	753050			5809	7014	3920	3966	5672	5672					0.023223087483074778
DHPGRTNSF	9	Unmodified	_DHPGRTNSF_					0	0	0		nc|ENSG00000073417|O60658-6|PDE8A;ENSG00000073417|ENST00000394553|PDE8A;ENST00000485596.5_1_15:85634092-85681131:+|nuORF;nc|ENSG00000073417|O60658-2|PDE8A;nc|ENSG00000284762|O95263-5|PDE8B;nc|ENSG00000284762|O95263-2|PDE8B;nc|ENSG00000284762|O95263-6|PDE8B;nc|ENSG00000284762|O95263-3|PDE8B;nc|ENSG00000284762|O95263-4|PDE8B;ENSG00000113231|ENST00000264917|PDE8B	nc|ENSG00000073417|O60658-6|PDE8A;nc|ENSG00000284762|O95263-3|PDE8B	nc|ENSG00000073417|O60658-6|PDE8A	MULTI-MSMS	A375_MHC_IP_R2	2	515.6588134765625	2	515.73868	1029.46281	-0.78216	-0.00040339	0.012077	6.2286E-06	-0.77008	-0.00039716	515.7388436848594	31.697	1.2726	32.434	32.044	33.317	0.73691					33	24	2	0	0	0	0.6324	1	11326	11326		13.042	0	1	2678300			5810	1561;3132	3921	3967	5673	5673					-0.05074645915851761
DHPRELVEV	9	Unmodified	_DHPRELVEV_					0	0	0			REV__nc|ENSG00000038382|O75962-2|TRIO	REV__nc|ENSG00000038382|O75962-2|TRIO	MSMS	A375_MHC_IP_R2	2	547.1708374023438	2	547.285463	1092.55637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.064	1	88.796	88.296	89.296	0.7318								0	0	0	0.15486	1	33508	33508		7.2892	1.0834	1		+		5811	16328	3922	3968	5674	5674					0.013796534665516447
DHQHSSIHCF	10	Unmodified	_DHQHSSIHCF_					0	0	0			REV__ENSG00000185010|ENST00000360256|F8	REV__ENSG00000185010|ENST00000360256|F8	MSMS	A375_MHC_IP_R2	2	605.698486328125	2	605.756546	1209.49854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.231	1	82.974	82.474	83.474	0.74293								0	0	0	0.15038	1	31236	31236		17.113	3.2068	1		+		5812	21858	3923	3969	5675	5675					-0.09782931730501332
DHRLYRKKRRK	11	Unmodified	_DHRLYRKKRRK_					0	0	0			REV__FOXH1|p.C325Sfs*3|1|0.04|ENSG00000160973|chr8:144474362-144474362|C/-|frameshift_variant	REV__FOXH1|p.C325Sfs*3|1|0.04|ENSG00000160973|chr8:144474362-144474362|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	778.8742065429688	2	778.473849	1554.93315	-0.67214	-0.00052324	1.597	0.0012432	0.92488	0.00071999	778.4748780899503	91.012	0.40403	91.012	90.845	91.249	0					14	7	3	0	0	0	0.73897	1	33461	33461		0.35063	0.043601	1	1785700	+		5813	20194	3924	3970	5676	5676					0.17787601807799547
DHRLYRKKRRK	11	Unmodified	_DHRLYRKKRRK_					0	0	0			REV__FOXH1|p.C325Sfs*3|1|0.04|ENSG00000160973|chr8:144474362-144474362|C/-|frameshift_variant	REV__FOXH1|p.C325Sfs*3|1|0.04|ENSG00000160973|chr8:144474362-144474362|C/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	778.473849	1554.93315	-0.67214	-0.00052324	1.597	0.0012432	0.92488	0.00071999	778.4748780899503	91.012	0.40403	91.012	90.845	91.249	0	0.015694	0.00042313	NaN	0.35063	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1785700	+		5814	20194	3924	3970							0.17787601807799547
DHRLYRKKRRK	11	Unmodified	_DHRLYRKKRRK_					0	0	0			REV__FOXH1|p.C325Sfs*3|1|0.04|ENSG00000160973|chr8:144474362-144474362|C/-|frameshift_variant	REV__FOXH1|p.C325Sfs*3|1|0.04|ENSG00000160973|chr8:144474362-144474362|C/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	778.473849	1554.93315	-0.86278	-0.00067165	0.77289	0.00060168	-0.089889	-6.9977E-05	778.4751378475061	90.249	0.30517	90.981	90.751	91.056	0.7318	-0.015694	-0.00085999	NaN	0.35063	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1380900	+		5815	20194	3924	3970							0.17787601807799547
DHRRYFYVNEQ	11	Unmodified	_DHRRYFYVNEQ_					0	0	0		nc|ENSG00000109920|Q8N3X1-2|FNBP4;ENSG00000109920|ENST00000263773|FNBP4;ENST00000525792.5_1_11:47746320-47755666:-|nuORF	nc|ENSG00000109920|Q8N3X1-2|FNBP4	nc|ENSG00000109920|Q8N3X1-2|FNBP4	MSMS	A375_MHC_IP_R1	1	509.6297912597656	3	509.576018	1525.70622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.241	1	50.241	49.741	50.741	0								0	0	0	0.16312	1	17793	17793		1.0136	0	1				5816	2904	3925	3971	5677	5677					-0.035600262616299005
DHSELPIG	8	Unmodified	_DHSELPIG_					0	0	0		ENSG00000149451|ENST00000356518|ADAM33;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENST00000466620.5_1_20:3653963-3654391:-|nuORF	ENSG00000149451|ENST00000356518|ADAM33	ENSG00000149451|ENST00000356518|ADAM33	MULTI-SECPEP	A375_MHC_IP_R1	1	434.59130859375	2	434.213975	866.413397	-0.18526	-8.0441E-05	0.11795	5.1216E-05	-0.067304	-2.9224E-05	434.2138840232755	61.488	0.56084	61.488	61.227	61.788	0					16	10	2	0	0	0	0.972	1	22193	22193		9.3474	4.1168	1	1548800			5817	5805	3926	3972	5678	5678					-0.025153539246502987
DHSELPIG	8	Unmodified	_DHSELPIG_					0	0	0		ENSG00000149451|ENST00000356518|ADAM33;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENST00000466620.5_1_20:3653963-3654391:-|nuORF	ENSG00000149451|ENST00000356518|ADAM33	ENSG00000149451|ENST00000356518|ADAM33	MULTI-SECPEP	A375_MHC_IP_R2	2	433.6282043457031	2	434.213975	866.413397	-0.55805	-0.00024231	1.0372	0.00045035	0.47913	0.00020804	434.21408543371786	60.731	0.50581	61.476	61.263	61.769	0.74503					17	9	3	0	0	0	0.972	1	23062	23062		9.3474	3.587	1	1587300			5818	5805	3926	3972	5679	5679					-0.025153539246502987
DHTKLLKLP	9	Unmodified	_DHTKLLKLP_					0	0	0			REV__ENSG00000147160|ENST00000276101|AWAT2	REV__ENSG00000147160|ENST00000276101|AWAT2	MULTI-MSMS	A375_MHC_IP_R1	1	355.9535217285156	3	355.553603	1063.63898	0.19873	7.0661E-05	-0.49872	-0.00017732	-0.29998	-0.00010666	355.5534061616638	35.68	0.76432	35.68	35.269	36.033	0					32	14	3	0	0	0	0.2002	1	11871	11871		28.495	4.7047	1	4639500	+		5819	19575	3927	3973	5680	5680					0.1097059526537123
DHTKVCFTL	9	Unmodified	_DHTKVCFTL_					0	0	0			REV__nc|ENSG00000019144|Q86UU1-2|PHLDB1	REV__nc|ENSG00000019144|Q86UU1-2|PHLDB1	MULTI-MSMS	A375_MHC_IP_R2	2	355.4598083496094	3	355.179548	1062.51682	-0.52384	-0.00018606	-0.077888	-2.7664E-05	-0.60173	-0.00021372	355.17947180774473	34.09	2.8951	34.842	32.67	35.565	0.75225					76	56	2	0	0	0	0.6898	1	12453	12453		4.897	1.5774	1	5326300	+		5820	16258	3928	3974	5681	5681					-0.011941898085069624
DHTQCENPEKN	11	Unmodified	_DHTQCENPEKN_					0	0	0		nc|ENSG00000010310|P48546-2|GIPR;nc|ENSG00000010310|P48546-3|GIPR;ENSG00000010310|ENST00000590918|GIPR;ENST00000588816.1_1_19:46176107-46178652:+|nuORF	nc|ENSG00000010310|P48546-2|GIPR	nc|ENSG00000010310|P48546-2|GIPR	MULTI-MSMS	A375_MHC_IP_R1	1	439.2510986328125	3	438.850819	1313.53063	-0.12155	-5.3341E-05	1.3082	0.00057411	1.1867	0.00052077	438.8510066016015	61.638	0.51088	61.638	61.432	61.943	0					23	9	3	0	0	0	0.73332	1	22278	22278		2.6312	0.54727	1	3994500			5821	978	3929	3975	5682	5682					-0.1135960883802909
DHTQCENPEKN	11	Unmodified	_DHTQCENPEKN_					0	0	0		nc|ENSG00000010310|P48546-2|GIPR;nc|ENSG00000010310|P48546-3|GIPR;ENSG00000010310|ENST00000590918|GIPR;ENST00000588816.1_1_19:46176107-46178652:+|nuORF	nc|ENSG00000010310|P48546-2|GIPR	nc|ENSG00000010310|P48546-2|GIPR	MULTI-MSMS	A375_MHC_IP_R2	2	439.2507629394531	3	438.850819	1313.53063	-0.61384	-0.00026938	0.93978	0.00041242	0.32594	0.00014304	438.8509446191328	60.913	0.60597	61.658	61.364	61.97	0.74503					26	11	3	0	0	0	0.73016	1	23077	23077		4.4062	0.56024	1	5890500			5822	978	3929	3975	5683	5683					-0.1135960883802909
DHVLKRVLP	9	Unmodified	_DHVLKRVLP_					0	0	0			REV__DYNC1LI2|p.P344L|1|0.36|ENSG00000135720|chr16:66730122-66730122|G/A|missense_variant	REV__DYNC1LI2|p.P344L|1|0.36|ENSG00000135720|chr16:66730122-66730122|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	539.2316284179688	2	538.832383	1075.65021	-1.2759	-0.00068751	-0.15764	-8.494E-05	-1.4336	-0.00077245	538.8322956406469	56.992	0.45985	57.742	57.51	57.969	0.75015					17	8	3	0	0	0	0.78348	1	21556	21556		4.3292	0.38484	1	3359400	+		5823	16048	3930	3976	5684	5684					0.11541417359512707
DHVYLQGWED	10	Unmodified	_DHVYLQGWED_					0	0	0		ENST00000461225.5_1_17:37235749-37309234:-|nuORF;nc|ENSG00000161381|Q8IUK5-3|PLXDC1;ENST00000493200.5_1_17:37235696-37288242:-|nuORF;ENST00000578517.5_1_17:37235696-37309234:-|nuORF;nc|ENSG00000161381|Q8IUK5-2|PLXDC1;ENST00000394318.7_1_17:37235696-37307690:-|nuORF;nc|ENSG00000161381|Q8IUK5-4|PLXDC1;ENSG00000161381|ENST00000315392|PLXDC1	ENST00000461225.5_1_17:37235749-37309234:-|nuORF	ENST00000461225.5_1_17:37235749-37309234:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	421.5873718261719	3	421.187649	1260.54112	0.039337	1.6568E-05	-0.41544	-0.00017498	-0.37611	-0.00015841	421.18721029567655	61.646	1.1244	61.646	61.279	62.403	0					60	21	4	0	0	0	0.70651	1	22203	22203		5.4027	1.2861	1	15847000			5824	6472	3931	3977	5685	5685					-0.07873258121298932
DHYEISHQSL	10	Unmodified	_DHYEISHQSL_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	A375_MHC_IP_R1	1	410.31671142578125	3	410.191282	1227.55202	-0.054198	-2.2232E-05	1.232	0.00050534	1.1778	0.00048311	410.5244509114823	64.479	1.4247	64.479	64.191	65.616	0					35	27	2	0	0	0	0.93873	1	23383	23383		2.8433	1.881	1	607910	+		5825	19741	3932	3978	5686	5686					-0.05265855746984016
DHYVHFSSA	9	Unmodified	_DHYVHFSSA_					0	0	0		ENSG00000186912|ENST00000374519|P2RY4	ENSG00000186912|ENST00000374519|P2RY4	ENSG00000186912|ENST00000374519|P2RY4	MULTI-SECPEP	A375_MHC_IP_R2	2	355.61431884765625	3	354.826163	1061.45666	-0.20804	-7.3818E-05	-1.4949	-0.00053042	-1.7029	-0.00060424	355.1599218277402	98.352	0.50769	99.112	98.844	99.352	0.75977					16	9	3	0	0	0	0.81688	1	37264	37264		1.0715	0.10919	1	1525800			5826	8791	3933	3979	5687	5687					-0.07161164147373711
DHYVYKVGI	9	Unmodified	_DHYVYKVGI_					0	0	0		ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ;ENST00000582864.1_1_17:65184426-65184723:-|nuORF	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MULTI-SECPEP	A375_MHC_IP_R1	1	365.5943298339844	3	365.194075	1092.5604	0.66737	0.00024372	-0.19814	-7.2358E-05	0.46923	0.00017136	365.1939843813755	45.157	0.60595	45.157	44.878	45.484	0					20	11	3	0	0	0	0.47674	1	15796	15796		36.506	14.916	1	5484900			5827	9248	3934	3980	5688	5688					0.017817429602928314
DHYVYKVGI	9	Unmodified	_DHYVYKVGI_					0	0	0		ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ;ENST00000582864.1_1_17:65184426-65184723:-|nuORF	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MULTI-SECPEP	A375_MHC_IP_R2	2	365.593994140625	3	365.194075	1092.5604	0.056747	2.0724E-05	-0.21191	-7.739E-05	-0.15517	-5.6666E-05	365.1940147208287	44.391	0.45599	45.16	44.934	45.39	0.7691					24	8	4	0	0	0	0.23894	1	16569	16569		55.503	32.845	1	5665100			5828	9248	3934	3980	5689	5689					0.017817429602928314
DIAAQWSLA	9	Unmodified	_DIAAQWSLA_					0	0	0			REV__CACNA1C|p.P1597Qfs*32|1|0.14|ENSG00000151067|chr12:2668954-2668961|CCTCTGAA/-|frameshift_variant	REV__CACNA1C|p.P1597Qfs*32|1|0.14|ENSG00000151067|chr12:2668954-2668961|CCTCTGAA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	487.1850280761719	2	487.750724	973.486896	-0.22335	-0.00010894	-2.2939	-0.0011189	-2.5173	-0.0012278	487.7511843429663	63.554	0.61366	63.554	63.173	63.786	0					16	11	2	0	0	0	0.59098	1	22888	22888		21.537	13.627	1	855050	+		5829	15548	3935	3981	5690	5690					-0.0009080548220481433
DIAPFFTKP	9	Unmodified	_DIAPFFTKP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;TTN|p.L14011*|1|0.26|ENSG00000155657|chr2:178618595-178618595|A/-|frameshift_variant;TTN|p.V5956Efs*8|1|0.3|ENSG00000155657|chr2:178729292-178729338|CAGGGCAACTCTAGTACTGCATGAGCAGCTGCCGCCTTCATTGGATA/-|frameshift_variant;TTN|p.F5884Lfs*5|1|0.04|ENSG00000155657|chr2:178729553-178729553|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R2	2	517.7105712890625	2	518.279118	1034.54368	-0.78206	-0.00040532	1.2772	0.00066196	0.49516	0.00025663	518.2803783237325	32.756	0.40641	33.493	33.367	33.773	0.73692					9	7	2	0	0	0	0.53748	1	11694	11694		24.021	0	1	1045100			5830	6151;14694	3936	3982	5691	5691					0.027792420743026014
DIASKNFFKVS	11	Unmodified	_DIASKNFFKVS_					0	0	0		tr|U7SRJ7|U7SRJ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01629PE=4SV=1	tr|U7SRJ7|U7SRJ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01629PE=4SV=1	tr|U7SRJ7|U7SRJ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01629PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	629.214111328125	2	628.337695	1254.66084	-0.45111	-0.00028345	0.12615	7.9263E-05	-0.32496	-0.00020419	628.3378868845251	106.09	0.6654	106.09	105.81	106.47	0					32	12	4	0	0	0	0.72565	1	38862	38862		13.042	2.2185	1	7855000			5831	29612	3937	3983	5692	5692					0.04369355223275306
DIATGRAV	8	Unmodified	_DIATGRAV_					0	0	0		ENSG00000071991|ENST00000262150|CDH19;CDH19|p.Q472Sfs*4|1|0.22|ENSG00000071991|chr18:66529890-66529891|-/G|frameshift_variant;nc|ENSG00000071991|Q9H159-2|CDH19;chr18:66505302-66529845|395|18.09|0.51|5.14|-|ENST00000540086|CDH19,CDH19	ENSG00000071991|ENST00000262150|CDH19	ENSG00000071991|ENST00000262150|CDH19	MULTI-SECPEP	A375_MHC_IP_R1	1	401.5931701660156	2	401.72451	801.434466	-0.011277	-4.5301E-06	-0.69323	-0.00027849	-0.7045	-0.00028302	401.7241568322106	112.51	0.71448	112.51	112.18	112.89	0					19	13	3	0	0	0	0.972	1	41210	41210		8.5933	1.8701	1	10142000			5832	1523	3938	3984	5693	5693					0.025806561748481727
DIATSHENEQ	10	Unmodified	_DIATSHENEQ_					0	0	0		ENSG00000102763|ENST00000379310|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8;VWA8|p.C1115G|1|0.67|ENSG00000102763|chr13:41701413-41701413|A/C|missense_variant	ENSG00000102763|ENST00000379310|VWA8	ENSG00000102763|ENST00000379310|VWA8	MULTI-MSMS	A375_MHC_IP_R1	1	382.23553466796875	3	381.835275	1142.484	0.23479	8.965E-05	0.59081	0.00022559	0.82559	0.00031524	381.83539154041557	33.14	0.40443	33.14	32.887	33.291	0					11	7	2	0	0	0	0.71564	1	10817	10817		2.8433	0.3448	1	1879700			5833	2391	3939	3985	5694	5694					-0.0815472539768507
DIATWVILY	9	Unmodified	_DIATWVILY_					0	0	0		ENST00000515254.1_1_5:137506426-137514303:-|nuORF	ENST00000515254.1_1_5:137506426-137514303:-|nuORF	ENST00000515254.1_1_5:137506426-137514303:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6849975585938	2	547.30005	1092.58555	-0.93716	-0.00051291	-2.3077	-0.001263	-3.2448	-0.0017759	547.2990383542275	67.929	0.45487	67.929	67.754	68.209	0					11	8	2	0	0	0	0.47368	1	24617	24617		10.074	0	1	819070			5834	12949	3940	3986	5695	5695					0.04295797762847542
DIAVGASDYG	10	Unmodified	_DIAVGASDYG_					0	0	0			REV__ENSG00000131459|ENST00000253778|GFPT2	REV__ENSG00000131459|ENST00000253778|GFPT2	MULTI-MSMS	A375_MHC_IP_R1	1	484.6216735839844	2	484.221997	966.429441	-0.29011	-0.00014048	0.009658	4.6766E-06	-0.28045	-0.0001358	484.22199798540925	61.665	0.61274	61.665	61.382	61.994	0					25	11	3	0	0	0	0.45919	1	22220	22220		30.637	7.4881	1	8699700	+		5835	18605	3941	3987	5696	5696					-0.05511692478421537
DICLNCWI	8	Unmodified	_DICLNCWI_					0	0	0			REV__nc|ENSG00000163689|Q6ZVT6-2|CFAP20DC	REV__nc|ENSG00000163689|Q6ZVT6-2|CFAP20DC	MULTI-MSMS	A375_MHC_IP_R1	1	490.1734924316406	2	490.222431	978.430309	-0.43473	-0.00021311	0.3907	0.00019153	-0.044029	-2.1584E-05	490.2230916262264	86.958	1.0656	86.958	86.274	87.34	0					29	20	3	0	0	0	0.77488	1	31901	31901		13.508	0	1	2195400	+		5836	20399	3942	3988	5697	5697					-0.05976892634714659
DICYGYCC	8	Unmodified	_DICYGYCC_					0	0	0			REV__ENSG00000198785|ENST00000361820|GRIN3A	REV__ENSG00000198785|ENST00000361820|GRIN3A	MULTI-SECPEP	A375_MHC_IP_R1	1	939.7044677734375	1	939.304522	938.297246	0.017142	1.6101E-05	0.50027	0.0004699	0.51741	0.000486	939.3047900249873	57.39	0.56045	57.39	57.159	57.72	0					15	10	2	0	0	0	0.972	1	20566	20566		0	0	1	5083000	+		5837	22416	3943	3989	5698	5698					-0.17437080082891043
DIDDADAQF	9	Unmodified	_DIDDADAQF_					0	0	0			REV__ENSG00000115306|ENST00000356805|SPTBN1;REV__nc|ENSG00000115306|Q01082-2|SPTBN1	REV__ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R1	1	505.6085510253906	2	505.209086	1008.40362	-0.44262	-0.00022361	0.22365	0.00011299	-0.21896	-0.00011062	505.20916006663873	37.016	0.86169	37.016	36.644	37.505	0					42	16	4	0	0	0	0.43707	1	12389	12389		28.487	0	1	20766000	+		5838	17871;27186	3944	3990	5699	5699					-0.10024586720714979
DIDDADAQF	9	Unmodified	_DIDDADAQF_					0	0	0			REV__ENSG00000115306|ENST00000356805|SPTBN1;REV__nc|ENSG00000115306|Q01082-2|SPTBN1	REV__ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	A375_MHC_IP_R2	2	505.1589050292969	2	505.209086	1008.40362	-0.94461	-0.00047723	0.21006	0.00010612	-0.73456	-0.0003711	505.20915933235455	36.412	1.0174	37.183	36.799	37.816	0.7709					41	19	3	0	0	0	0.2264	1	13245	13245		36.044	5.4077	1	18105000	+		5839	17871;27186	3944	3990	5700	5700					-0.10024586720714979
DIDEDDNVL	9	Unmodified	_DIDEDDNVL_					0	0	0			REV__ENST00000493761.1_1_3:169998074-169999052:+|nuORF	REV__ENST00000493761.1_1_3:169998074-169999052:+|nuORF	MSMS	A375_MHC_IP_R1	1	524.2032470703125	2	524.227476	1046.4404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.727	1	80.727	80.227	81.227	0								0	0	0	0.15486	1	29491	29491		8.5933	0.68312	1		+		5840	20379	3945	3991	5701	5701					-0.08096334894798929
DIDEIHAPY	9	Unmodified	_DIDEIHAPY_					0	0	0			REV__ENSG00000025293|ENST00000374012|PHF20	REV__ENSG00000025293|ENST00000374012|PHF20	MULTI-MSMS	A375_MHC_IP_R2	2	536.67822265625	2	536.750921	1071.48729	-0.94029	-0.0005047	0.24467	0.00013133	-0.69562	-0.00037338	536.7508865412485	70.826	0.55499	71.56	71.302	71.857	0.73421					15	10	2	0	0	0	0.43185	1	26867	26867		23.148	6.2061	1	4424300	+		5841	16286	3946	3992	5702	5702					-0.04559430552990307
DIDEIHAPY	9	Unmodified	_DIDEIHAPY_					0	0	0			REV__ENSG00000025293|ENST00000374012|PHF20	REV__ENSG00000025293|ENST00000374012|PHF20	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1502685546875	2	536.750921	1071.48729	-0.94029	-0.0005047	0.24467	0.00013133	-0.69562	-0.00037338	536.7508865412485	70.826	0.55499	71.56	71.302	71.857	0.73421					15	10	2	0	0	0	0.71541	1	26852	26852		11.64	0	1	4424300	+		5842	16286	3946	3992	5703	5703					-0.04559430552990307
DIDEKKEWHMI	11	Unmodified	_DIDEKKEWHMI_					0	0	0			REV__nc|ENSG00000164946|Q5H8C1-4|FREM1	REV__nc|ENSG00000164946|Q5H8C1-4|FREM1	MSMS	A375_MHC_IP_R2	2	481.77081298828125	3	481.902743	1442.6864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.358	1	83.101	82.601	83.601	0.74293								0	0	0	0.16297	1	31285	31285		1.3296	0.11481	1		+		5843	27330	3947	3993	5704	5704					-0.01723538316628037
DIDEKLLNW	9	Unmodified	_DIDEKLLNW_					0	0	0			REV__nc|ENSG00000152778|Q13325-2|IFIT5	REV__nc|ENSG00000152778|Q13325-2|IFIT5	MULTI-SECPEP	A375_MHC_IP_R2	2	382.9573669433594	3	382.532756	1144.57644	-0.37753	-0.00014442	0.20925	8.0043E-05	-0.16828	-6.4374E-05	382.53283791140933	49.446	0.55499	50.203	49.843	50.398	0.75737					23	10	3	0	0	0	0.77003	1	18545	18545		11.495	5.3029	1	3239000	+		5844	19816	3948	3994	5705	5705					0.00993404406517584
DIDGYLAELE	10	Unmodified	_DIDGYLAELE_					0	0	0			REV__ENSG00000073756|ENST00000367468|PTGS2	REV__ENSG00000073756|ENST00000367468|PTGS2	MSMS	A375_MHC_IP_R1	1	569.1883544921875	2	569.269144	1136.52373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.921	1	22.921	22.421	23.421	0								0	0	0	0.15332	1	6207	6207		10.074	0	1		+		5845	16624	3949	3995	5706	5706					-0.03906598446951648
DIDIRPGLY	9	Unmodified	_DIDIRPGLY_					0	0	0		ENST00000484312.1_1_3:179298984-179304429:+|nuORF;nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000077080|ENST00000160382|ACTL6B;ENSG00000136518|ENST00000429709|ACTL6A	ENST00000484312.1_1_3:179298984-179304429:+|nuORF	ENST00000484312.1_1_3:179298984-179304429:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	531.6842041015625	2	531.284931	1060.55531	-0.5965	-0.00031691	0.069415	3.6879E-05	-0.52708	-0.00028003	531.2847626825939	83.266	0.65938	83.266	82.924	83.583	0					28	12	3	0	0	0	0.16764	1	30446	30446		60.074	34.675	1	7678000			5846	1645	3950	3996	5707	5707					0.027454390976799914
DIDIRPGLY	9	Unmodified	_DIDIRPGLY_					0	0	0		ENST00000484312.1_1_3:179298984-179304429:+|nuORF;nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000077080|ENST00000160382|ACTL6B;ENSG00000136518|ENST00000429709|ACTL6A	ENST00000484312.1_1_3:179298984-179304429:+|nuORF	ENST00000484312.1_1_3:179298984-179304429:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	531.4230346679688	2	531.284931	1060.55531	-0.66414	-0.00035285	-0.3752	-0.00019934	-1.0393	-0.00055219	531.2846811034881	82.648	0.55533	83.391	83.093	83.648	0.74293					24	10	3	0	0	0	0.16764	1	31402	31402		60.074	27.768	1	7978500			5847	1645	3950	3996	5708	5708					0.027454390976799914
DIDKYYTE	8	Unmodified	_DIDKYYTE_					0	0	0		ENSG00000162620|ENST00000354431|LRRIQ3	ENSG00000162620|ENST00000354431|LRRIQ3	ENSG00000162620|ENST00000354431|LRRIQ3	MULTI-MSMS	A375_MHC_IP_R1	1	524.6956787109375	2	523.73748	1045.46041	-0.4297	-0.00022505	0.14342	7.5115E-05	-0.28628	-0.00014994	523.7374615625658	97.978	0.81166	97.978	97.54	98.352	0					31	15	3	0	0	0	0.77515	1	35940	35940		12.532	0.89125	1	5761900			5848	6564	3951	3997	5709	5709					-0.06050539164198199
DIDLDLELR	9	Unmodified	_DIDLDLELR_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R2	2	367.3000183105469	3	367.864394	1100.57135	-0.14573	-5.3608E-05	0.0044698	1.6443E-06	-0.14126	-5.1964E-05	367.86461411119643	21.102	0.50709	21.721	21.371	21.878	0.61932					15	9	2	0	0	0	0.56537	1	6617	6617		8.4443	0.83535	1	632670			5849	6151;14694	3952	3998	5710	5710					0.0250910054387532
DIDLGEYTHDE	11	Unmodified	_DIDLGEYTHDE_					0	0	0			REV__nc|ENSG00000007312|P40259-2|CD79B	REV__nc|ENSG00000007312|P40259-2|CD79B	MSMS	A375_MHC_IP_R1	1	653.7744750976562	2	653.775322	1305.53609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.14	1	121.14	120.64	121.64	0								0	0	0	0.16249	1	44964	44964		5.7319	0	1		+		5850	16155	3953	3999	5711	5711					-0.10445606774578664
DIDLRVYDYF	10	Unmodified	_DIDLRVYDYF_					0	0	0		chr1:186041136-186044224|392|10.18|0.48|4.4|+|2|HMCN1,None|1	chr1:186041136-186044224|392|10.18|0.48|4.4|+|2|HMCN1,None|1	chr1:186041136-186044224|392|10.18|0.48|4.4|+|2|HMCN1,None|1	MSMS	A375_MHC_IP_R1	1	660.0228881835938	2	659.819335	1317.62412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.76	1	119.76	119.26	120.26	0								0	0	0	0.1524	1	44309	44309		13.042	0.80181	1				5851	393	3954	4000	5712	5712					-0.02198941393317
DIDNAANFQA	10	Unmodified	_DIDNAANFQA_					0	0	0			REV__ENST00000566749.5_1_16:30094185-30096380:+|nuORF	REV__ENST00000566749.5_1_16:30094185-30096380:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	539.1541137695312	2	539.743628	1077.4727	-0.87763	-0.00047369	-1.0256	-0.00055357	-1.9032	-0.0010273	539.7433485424534	129.91	0.20186	130.12	130	130.2	0.2142					5	3	2	0	0	0	0.75488	1	51084	51084		29.841	7.1043	1	2972400	+		5852	19701	3955	4001	5713	5713					-0.06293502701146281
DIDNPPAEVE	10	Unmodified	_DIDNPPAEVE_					0	0	0		ENSG00000166819|ENST00000300055|PLIN1	ENSG00000166819|ENST00000300055|PLIN1	ENSG00000166819|ENST00000300055|PLIN1	MULTI-SECPEP	A375_MHC_IP_R2	2	550.151123046875	2	549.751118	1097.48768	-1.0693	-0.00058786	0.30693	0.00016874	-0.76239	-0.00041913	549.7512406069661	23.56	0.45567	24.19	24.029	24.485	0.63014					14	8	3	0	0	0	0.55307	1	7642	7642		43.772	7.6454	1	10074000			5853	7114	3956	4002	5714	5714					-0.05716055623815919
DIDNPPAEVE	10	Unmodified	_DIDNPPAEVE_					0	0	0		ENSG00000166819|ENST00000300055|PLIN1	ENSG00000166819|ENST00000300055|PLIN1	ENSG00000166819|ENST00000300055|PLIN1	MULTI-MATCH	A375_MHC_IP_R1	1		2	549.751118	1097.48768	-0.73879	-0.00040615	0.40674	0.0002236	-0.33205	-0.00018255	549.7514535227118	24.133	0.96182	24.133	23.991	24.953	0	-0.028439	7.5404E-05	NaN	43.772	29	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11712000			5854	7114	3956	4002							-0.05716055623815919
DIDRERDP	8	Unmodified	_DIDRERDP_					0	0	0		ENSG00000197410|ENST00000357232|DCHS2;nc|ENSG00000197410|Q6V1P9-5|DCHS2	ENSG00000197410|ENST00000357232|DCHS2	ENSG00000197410|ENST00000357232|DCHS2	MULTI-MSMS	A375_MHC_IP_R1	1	508.6435546875	2	508.243795	1014.47304	-0.65647	-0.00033365	0.22044	0.00011204	-0.43603	-0.00022161	508.2439694285553	23.915	0.25426	23.915	23.787	24.042	0					7	4	2	0	0	0	0.77515	1	6704	6704		12.532	2.3482	1	4369600			5855	9153	3957	4003	5715	5715					-0.0336208298128895
DIDRFLTEVA	10	Unmodified	_DIDRFLTEVA_					0	0	0			REV__nc|ENSG00000131044|Q3SXZ7-2|TTLL9	REV__nc|ENSG00000131044|Q3SXZ7-2|TTLL9	MULTI-SECPEP	A375_MHC_IP_R1	1	589.1475830078125	2	589.806228	1177.5979	-0.28801	-0.00016987	-0.26478	-0.00015617	-0.5528	-0.00032604	589.8059883867322	81.482	1.0624	81.482	81.202	82.265	0					55	20	4	0	0	0	0.55307	1	29770	29770		43.772	3.5332	1	20451000	+		5856	27224	3958	4004	5716	5716					0.016207894352419316
DIDSHGRW	8	Unmodified	_DIDSHGRW_					0	0	0			REV__ENSG00000185585|ENST00000373580|OLFML2A	REV__ENSG00000185585|ENST00000373580|OLFML2A	MSMS	A375_MHC_IP_R1	1	493.1481018066406	2	493.227948	984.441343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.927	1	86.927	86.427	87.427	0								0	0	0	0.16876	1	31886	31886		14.582	3.4672	1		+		5857	21901	3959	4005	5717	5717					-0.051500309445714265
DIDSVYGRY	9	Unmodified	_DIDSVYGRY_					0	0	0			REV__ENSG00000001084|ENST00000650454|GCLC	REV__ENSG00000001084|ENST00000650454|GCLC	MULTI-MSMS	A375_MHC_IP_R1	1	544.1951904296875	2	544.256371	1086.49819	-0.45688	-0.00024866	-1.1279	-0.00061388	-1.5848	-0.00086254	544.2558126113454	88.879	1.1699	88.879	88.205	89.375	0					36	22	2	0	0	0	0.6898	1	32785	32785		7.9102	0.62092	1	2582100	+		5858	16081	3960	4006	5718	5718					-0.04160028178716857
DIDTAAKF	8	Unmodified	_DIDTAAKF_					0	0	0		ENST00000497075.5_1_2:176043783-176046391:-|nuORF;ENSG00000154518|ENST00000284727|ATP5MC3;ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1;ENSG00000135390|ENST00000394349|ATP5MC2;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2	ENST00000497075.5_1_2:176043783-176046391:-|nuORF	ENST00000497075.5_1_2:176043783-176046391:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	441.1240234375	2	440.724175	879.433798	-0.13621	-6.0029E-05	-0.085966	-3.7887E-05	-0.22217	-9.7917E-05	440.7242520547279	47.119	0.45928	47.88	47.664	48.123	0.76128					14	8	2	0	0	0	0.68964	1	17685	17685		37.974	7.7492	1	1435600			5859	6093	3961	4007	5719	5719					-0.010741832648591298
DIDTAAKFIG	10	Unmodified	_DIDTAAKFIG_					0	0	0		ENST00000497075.5_1_2:176043783-176046391:-|nuORF;ENSG00000154518|ENST00000284727|ATP5MC3;ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1;ENSG00000135390|ENST00000394349|ATP5MC2;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2	ENST00000497075.5_1_2:176043783-176046391:-|nuORF	ENST00000497075.5_1_2:176043783-176046391:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	525.8766479492188	2	525.776939	1049.53933	-0.48169	-0.00025326	-0.13041	-6.8567E-05	-0.61211	-0.00032183	525.7769344409962	73.434	1.3676	73.434	72.779	74.146	0					63	26	4	0	0	0	0.06997	1	26802	26802		84.522	44.572	1	21317000			5860	6093	3962	4008	5720	5720					0.016537328607682866
DIDTAAKFIG	10	Unmodified	_DIDTAAKFIG_					0	0	0		ENST00000497075.5_1_2:176043783-176046391:-|nuORF;ENSG00000154518|ENST00000284727|ATP5MC3;ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1;ENSG00000135390|ENST00000394349|ATP5MC2;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2	ENST00000497075.5_1_2:176043783-176046391:-|nuORF	ENST00000497075.5_1_2:176043783-176046391:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	525.45703125	2	525.776939	1049.53933	-0.5433	-0.00028565	-0.52319	-0.00027508	-1.0665	-0.00056073	525.7767095158565	72.769	1.3207	73.505	72.771	74.091	0.73541					54	25	4	0	0	0	0.027638	1	27648	27648		97.741	57.791	1	18247000			5861	6093	3962	4008	5721	5721					0.016537328607682866
DIDTAAKFIGA	11	Unmodified	_DIDTAAKFIGA_					0	0	0		ENST00000497075.5_1_2:176043783-176046391:-|nuORF;ENSG00000154518|ENST00000284727|ATP5MC3;ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1;ENSG00000135390|ENST00000394349|ATP5MC2;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2	ENST00000497075.5_1_2:176043783-176046391:-|nuORF	ENST00000497075.5_1_2:176043783-176046391:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	561.295166015625	2	561.295496	1120.57644	-0.6684	-0.00037517	0.039917	2.2405E-05	-0.62848	-0.00035277	561.2954990757396	84.647	0.91469	84.647	84.091	85.005	0					40	17	4	0	0	0	0.57984	1	31127	31127		24.882	5.5196	1	9786800			5862	6093	3963	4009	5722	5722					0.02097404406526948
DIDTAAKFIGA	11	Unmodified	_DIDTAAKFIGA_					0	0	0		ENST00000497075.5_1_2:176043783-176046391:-|nuORF;ENSG00000154518|ENST00000284727|ATP5MC3;ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1;ENSG00000135390|ENST00000394349|ATP5MC2;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2	ENST00000497075.5_1_2:176043783-176046391:-|nuORF	ENST00000497075.5_1_2:176043783-176046391:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	561.6952514648438	2	561.295496	1120.57644	-0.53173	-0.00029846	0.047055	2.6412E-05	-0.48468	-0.00027205	561.2953622774762	84.035	0.66586	84.775	84.407	85.073	0.73962					30	12	3	0	0	0	0.019216	1	31912	31912		111.31	76.377	1	9421400			5863	6093	3963	4009	5723	5723					0.02097404406526948
DIDTPEVDLY	10	Unmodified	_DIDTPEVDLY_					0	0	0		ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	MSMS	A375_MHC_IP_R2	2	590.2053833007812	2	590.274426	1178.5343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.164	1	81.909	81.409	82.409	0.74474								0	0	0	0.15158	1	30820	30820		14.838	0.93222	1				5864	6780	3964	4010	5724	5724					-0.04782615792510114
DIDTRSEFY	9	Unmodified	_DIDTRSEFY_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	A375_MHC_IP_R1	1	573.658935546875	2	573.259111	1144.50367	-0.22723	-0.00013026	0.22761	0.00013048	0.00037188	2.1318E-07	573.2591977008607	57.588	0.96651	57.588	57.211	58.177	0					59	18	4	0	0	0	0.030891	2	20588	20588;20639		74.2	45.705	1	50523000			5865	4950	3965	4011	5725;5726	5725					-0.06280349386884154
DIDTRSEFY	9	Unmodified	_DIDTRSEFY_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	A375_MHC_IP_R2	2	573.65869140625	2	573.259111	1144.50367	-0.66977	-0.00038395	0.010474	6.0045E-06	-0.6593	-0.00037795	573.2590194703087	56.983	1.0705	57.734	57.306	58.376	0.75015					62	20	4	0	0	0	0.020087	1	21462	21462		83.429	50.643	1	52454000			5866	4950	3965	4011	5727	5727					-0.06280349386884154
DIDVEEPRYK	10	Unmodified	_DIDVEEPRYK_					0	0	0			REV__nc|ENSG00000052126|Q9HAU0-2|PLEKHA5	REV__nc|ENSG00000052126|Q9HAU0-2|PLEKHA5	MULTI-SECPEP	A375_MHC_IP_R2	2	422.27862548828125	3	421.878704	1262.61428	-0.37128	-0.00015664	0.066311	2.7975E-05	-0.30497	-0.00012866	421.8787067086749	34.357	0.51019	35.109	34.904	35.414	0.75225					14	9	2	0	0	0	0.92199	1	12417	12417		14.957	6.5129	1	2476700	+		5867	27105	3966	4012	5728	5728					-0.006521293986679666
DIDVEEPRYK	10	Unmodified	_DIDVEEPRYK_					0	0	0			REV__nc|ENSG00000052126|Q9HAU0-2|PLEKHA5	REV__nc|ENSG00000052126|Q9HAU0-2|PLEKHA5	MULTI-MATCH	A375_MHC_IP_R1	1		3	421.878704	1262.61428	0.079877	3.3698E-05	-0.2111	-8.9057E-05	-0.13122	-5.5358E-05	421.87872102308785	35.011	0.55909	35.011	34.81	35.369	0	-0.04895	-0.00021419	NaN	14.957	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1993800	+		5868	27105	3966	4012							-0.006521293986679666
DIDYRNYLHQW	11	Unmodified	_DIDYRNYLHQW_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.Y6402Ffs*2|1|0.34|ENSG00000183091|chr2:151492486-151492487|AT/-|frameshift_variant;NEB|p.V4554Gfs*42|1|0.12|ENSG00000183091|chr2:151562738-151562739|-/CC|frameshift_variant;NEB|p.L4555Rfs*43|1|0.12|ENSG00000183091|chr2:151562736-151562737|-/CCTGCTCT|frameshift_variant	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MULTI-SECPEP	A375_MHC_IP_R2	2	508.6512756347656	3	508.240635	1521.70008	-0.67592	-0.00034353	0.6668	0.0003389	-0.0091153	-4.6328E-06	508.24162133565557	42.522	0.20272	43.294	43.167	43.369	0.7724					5	3	2	0	0	0	0.99883	1	15822	15822		2.6312	0	1	1032700			5869	8464	3967	4013	5729	5729					-0.0399054449317191
DIEDMVDWF	9	Unmodified	_DIEDMVDWF_					0	0	0			REV__ENSG00000115392|ENST00000233741|FANCL	REV__ENSG00000115392|ENST00000233741|FANCL	MULTI-SECPEP	A375_MHC_IP_R2	2	585.6472778320312	2	585.244615	1168.47468	-0.6614	-0.00038708	1.3493	0.00078965	0.68787	0.00040257	585.7458929589565	36.251	0.66273	37.022	36.595	37.258	0.7709					25	12	3	0	0	0	0.62767	1	13166	13166		16.942	6.8684	1	2860500	+		5870	17882	3968	4014	5730	5730					-0.10282210007562753
DIEEQHYAFTC	11	Unmodified	_DIEEQHYAFTC_					0	0	0			REV__ENSG00000100403|ENST00000352645|ZC3H7B	REV__ENSG00000100403|ENST00000352645|ZC3H7B	MSMS	A375_MHC_IP_R1	1	678.2301635742188	2	678.28226	1354.54997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.07	1	107.07	106.57	107.57	0								0	0	0	0.16191	1	39292	39292		8.7454	0.83525	1		+		5871	17087	3969	4015	5731	5731					-0.11312652547121615
DIEEQKADIY	10	Unmodified	_DIEEQKADIY_					0	0	0		ENSG00000073711|ENST00000264977|PPP2R3A;nc|ENSG00000073711|Q06190-3|PPP2R3A;nc|ENSG00000073711|Q06190-2|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	MULTI-MSMS	A375_MHC_IP_R1	1	612.6932983398438	2	612.29315	1222.57175	-0.62886	-0.00038505	0.4648	0.00028459	-0.16406	-0.00010045	612.2933345208056	67.189	0.71557	67.189	66.734	67.449	0					31	13	3	0	0	0	0.27246	1	24322	24322		41.84	3.2249	1	5283600			5872	1567	3970	4016	5732	5732					-0.030635245268967992
DIEKHPELKKL	11	Unmodified	_DIEKHPELKKL_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D	nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000012817|Q9BY66-2|KDM5D	MULTI-MSMS	A375_MHC_IP_R2	2	450.99749755859375	3	450.59776	1348.77145	-0.55758	-0.00025124	-0.03412	-1.5374E-05	-0.5917	-0.00026662	450.5976246353005	33.303	0.50942	34.056	33.737	34.247	0.75225					21	8	3	0	0	0	0.73557	1	11934	11934		3.5927	0.45872	1	8249800			5873	1013	3971	4017	5733	5733					0.11101575211500858
DIEKIHIS	8	Unmodified	_DIEKIHIS_					0	0	0			REV__ENSG00000110318|ENST00000263468|CEP126	REV__ENSG00000110318|ENST00000263468|CEP126	MULTI-SECPEP	A375_MHC_IP_R1	1	478.16656494140625	2	477.766374	953.518196	-0.49064	-0.00023441	-0.042607	-2.0356E-05	-0.53325	-0.00025477	477.76638001305344	54.847	0.864	54.847	54.567	55.431	0					27	16	2	0	0	0	0.68831	1	19588	19588		41.84	1.8823	1	4652900	+		5874	17623	3972	4018	5734	5734					0.0395776755190127
DIEKIHIS	8	Unmodified	_DIEKIHIS_					0	0	0			REV__ENSG00000110318|ENST00000263468|CEP126	REV__ENSG00000110318|ENST00000263468|CEP126	MULTI-SECPEP	A375_MHC_IP_R2	2	478.1658935546875	2	477.766374	953.518196	-0.80841	-0.00038623	-0.17216	-8.2251E-05	-0.98057	-0.00046848	477.76632965144876	54.213	0.70959	54.963	54.712	55.422	0.75075					25	13	3	0	0	0	0.6033	1	20456	20456		56.177	6.244	1	4809500	+		5875	17623	3972	4018	5735	5735					0.0395776755190127
DIEKLTEQY	9	Unmodified	_DIEKLTEQY_					0	0	0			REV__ENSG00000168556|ENST00000302327|ING2	REV__ENSG00000168556|ENST00000302327|ING2	MULTI-SECPEP	A375_MHC_IP_R1	1	569.4124145507812	2	569.784961	1137.55537	-0.49022	-0.00027932	-2.2499	-0.001282	-2.7401	-0.0015613	570.285450174966	84.267	0.20061	84.267	84.141	84.341	0					5	3	2	0	0	0	0.75466	1	30872	30872		12.532	0	1	1217600	+		5876	20867	3973	4019	5736	5736					-0.007906056930096383
DIEMKGELFD	10	Unmodified	_DIEMKGELFD_					0	0	0			REV__nc|ENSG00000155975|Q8NEZ2-2|VPS37A	REV__nc|ENSG00000155975|Q8NEZ2-2|VPS37A	MSMS	A375_MHC_IP_R1	1	598.6621704101562	2	598.778822	1195.54309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.28	1	109.28	108.78	109.78	0								0	0	0	0.15207	1	40083	40083		13.906	0.86358	1		+		5877	19955	3974	4020	5737	5737					-0.04685965427688643
DIEQLLEFM	9	Unmodified	_DIEQLLEFM_					0	0	0		nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6;nc|ENSG00000158987|Q8TEU7-6|RAPGEF6;RAPGEF6|p.R1052Efs*2|1|0.16|ENSG00000158987|chr5:131453101-131453101|A/-|frameshift_variant;nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;ENST00000514179.5_1_5:130834202-130867847:-|nuORF;RAPGEF2|p.I1087Ffs*98|1|0.31|ENSG00000109756|chr4:159350159-159350159|A/-|frameshift_variant;nc|ENSG00000109756|Q9Y4G8|RAPGEF2;ENSG00000109756|ENST00000691494|RAPGEF2	nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;RAPGEF2|p.I1087Ffs*98|1|0.31|ENSG00000109756|chr4:159350159-159350159|A/-|frameshift_variant	nc|ENSG00000158987|Q8TEU7-5|RAPGEF6	MULTI-SECPEP	A375_MHC_IP_R2	2	568.7030029296875	2	569.278457	1136.54236	-0.42588	-0.00024245	-3.8302	-0.0021805	-4.2561	-0.0024229	569.2742300721125	81.333	0.75909	82.077	81.775	82.534	0.74393					19	14	2	0	0	0	0.56537	1	31041	31041		29.082	8.628	1	1368700			5878	6342;2888	3975	4021	5738	5738					-0.020447600767283802
DIEREWRAW	9	Unmodified	_DIEREWRAW_					0	0	0			REV__ENSG00000108784|ENST00000225927|NAGLU	REV__ENSG00000108784|ENST00000225927|NAGLU	MULTI-SECPEP	A375_MHC_IP_R1	1	421.27496337890625	3	420.875516	1259.60472	0.2705	0.00011385	-1.0301	-0.00043354	-0.7596	-0.0003197	421.2095177635147	42.872	0.71268	42.872	42.638	43.351	0					29	13	3	0	0	0	0.53098	1	14869	14869		21.59	0	1	3152400	+		5879	17553	3976	4022	5739	5739					-0.014698528935241484
DIEREWRWA	9	Unmodified	_DIEREWRWA_					0	0	0			REV__ENSG00000115524|ENST00000335508|SF3B1	REV__ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	A375_MHC_IP_R1	1	421.6093444824219	3	420.875516	1259.60472	0.2705	0.00011385	-1.0301	-0.00043354	-0.7596	-0.0003197	421.2095177635147	42.872	0.71268	42.872	42.638	43.351	0					29	13	3	0	0	0	0.56584	1	14886	14886		16.566	0	1	3152400	+		5880	17893	3977	4023	5740	5740					-0.014698528935241484
DIFNTQIMRYY	11	Unmodified	_DIFNTQIMRYY_					0	0	0			REV__nc|ENSG00000115657|Q9NP58-4|ABCB6	REV__nc|ENSG00000115657|Q9NP58-4|ABCB6	MSMS	A375_MHC_IP_R1	1	488.4691162109375	3	488.571105	1462.69149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.206	1	61.206	60.706	61.706	0								0	0	0	0.16336	1	22058	22058		1.2148	0.10508	1		+		5881	17904	3978	4024	5741	5741					-0.021352344539536716
DIFNTQIMRYY	11	Unmodified	_DIFNTQIMRYY_					0	0	0			REV__nc|ENSG00000115657|Q9NP58-4|ABCB6	REV__nc|ENSG00000115657|Q9NP58-4|ABCB6	MSMS	A375_MHC_IP_R2	2	488.46923828125	3	488.571105	1462.69149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.594	1	61.339	60.839	61.839	0.74503								0	0	0	0.16336	1	22946	22946		1.2148	0.10508	1		+		5882	17904	3978	4024	5742	5742					-0.021352344539536716
DIFQHMNCI	9	Unmodified	_DIFQHMNCI_					0	0	0			REV__ENST00000469841.5_1_3:57131519-57204269:-|nuORF	REV__ENST00000469841.5_1_3:57131519-57204269:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	560.1387329101562	2	560.749344	1119.48414	-0.46632	-0.00026149	-1.6009	-0.00089768	-2.0672	-0.0011592	560.7484221439739	110.22	0.71601	110.95	110.63	111.34	0.73692					40	13	4	0	0	0	0.76187	1	41568	41568		7.2892	0	1	4242100	+		5883	19442	3979	4025	5743	5743					-0.07082720203015924
DIFQKIKKF	9	Unmodified	_DIFQKIKKF_					0	0	0		nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE;CENPE|p.D1988Mfs*4|1|0.29|ENSG00000138778|chr4:103140032-103140032|T/-|frameshift_variant;CENPE|p.P121S|1|0.18|ENSG00000138778|chr4:103195230-103195230|G/A|missense_variant	nc|ENSG00000138778|Q02224-3|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	MSMS	A375_MHC_IP_R1	1	389.60003662109375	3	389.569253	1165.68593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.573	1	28.573	28.073	29.073	0								0	0	0	0.15486	1	8832	8832		10.8	1.8233	1				5884	5032	3980	4026	5744	5744					0.1097145481651296
DIFRNFFRIPN	11	Unmodified	_DIFRNFFRIPN_					0	0	0			REV__nc|ENSG00000136051|Q2M389-2|WASHC4	REV__nc|ENSG00000136051|Q2M389-2|WASHC4	MSMS	A375_MHC_IP_R2	2	719.8799438476562	2	719.883136	1437.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.81	1	90.541	90.041	91.041	0.7318								0	0	0	0.16297	1	34173	34173		3.2813	0.78282	1		+		5885	18913	3981	4027	5745	5745					0.05035243991414973
DIFTETYRPL	10	Unmodified	_DIFTETYRPL_					0	0	0		tr|U7STB6|U7STB6_FUSNUAdenosylmethionine-8-amino-7-oxononanoateaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioAPE=3SV=1	tr|U7STB6|U7STB6_FUSNUAdenosylmethionine-8-amino-7-oxononanoateaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioAPE=3SV=1	tr|U7STB6|U7STB6_FUSNUAdenosylmethionine-8-amino-7-oxononanoateaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	419.2840270996094	3	418.883677	1253.6292	-0.36813	-0.0001542	0.44024	0.00018441	0.072117	3.0209E-05	418.8837985228743	71.757	0.40554	72.491	72.314	72.72	0.73421					10	7	2	0	0	0	0.94363	1	27259	27259		1.4551	0	1	1874300			5886	29676	3982	4028	5746	5746					0.012533624693332968
DIFVLIAFVP	10	Unmodified	_DIFVLIAFVP_					0	0	0		KCNQ3|p.S209F|1|0.23|ENSG00000184156|chr8:132180308-132180308|G/A|missense_variant	KCNQ3|p.S209F|1|0.23|ENSG00000184156|chr8:132180308-132180308|G/A|missense_variant	KCNQ3|p.S209F|1|0.23|ENSG00000184156|chr8:132180308-132180308|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	378.9188537597656	3	378.558354	1132.65323	0.32166	0.00012177	-0.13009	-4.9247E-05	0.19157	7.2519E-05	378.55815854748073	23.147	0.80924	23.147	22.673	23.483	0					21	15	2	0	0	0	0.71118	1	6253	6253		3.8763	0	1	1826700			5887	14200	3983	4029	5747	5747					0.09221247693653822
DIGFCAIQPTP	11	Unmodified	_DIGFCAIQPTP_					0	0	0		ENST00000542612.1_1_11:72398360-72400579:-|nuORF	ENST00000542612.1_1_11:72398360-72400579:-|nuORF	ENST00000542612.1_1_11:72398360-72400579:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	387.25592041015625	3	387.858475	1160.5536	-0.1013	-3.9291E-05	0.1685	6.5353E-05	0.067196	2.6063E-05	387.85855520804176	26.278	0.96271	26.278	25.816	26.779	0					30	18	2	0	0	0	0.92392	1	7758	7758		10.527	4.3356	1	3515900			5888	13304	3984	4030	5748	5748					-0.020259379826029544
DIGGNEEESFF	11	Unmodified	_DIGGNEEESFF_					0	0	0			REV__nc|ENSG00000108423|Q9UJT1-3|TUBD1	REV__nc|ENSG00000108423|Q9UJT1-3|TUBD1	MSMS	A375_MHC_IP_R2	2	622.2503051757812	2	622.259308	1242.50406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.3	1	103.06	102.56	103.56	0.76428								0	0	0	0.16124	1	38763	38763		12.241	2.1667	1		+		5889	27164	3985	4031	5749	5749					-0.10748974457715121
DIGGPEISKG	10	Unmodified	_DIGGPEISKG_					0	0	0			REV__nc|ENSG00000111912|Q8NI08-7|NCOA7	REV__nc|ENSG00000111912|Q8NI08-7|NCOA7	MSMS	A375_MHC_IP_R2	2	486.65484619140625	2	486.753464	971.492375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.588	1	48.349	47.849	48.849	0.76128								0	0	0	0.14925	1	17848	17848		19.257	1.1106	1		+		5890	17704	3986	4032	5750	5750					0.005488733096171927
DIGKKEIKPF	10	Unmodified	_DIGKKEIKPF_					0	0	0		ENSG00000112562|ENST00000356284|SMOC2;nc|ENSG00000112562|Q9H3U7-2|SMOC2	ENSG00000112562|ENST00000356284|SMOC2	ENSG00000112562|ENST00000356284|SMOC2	MULTI-MSMS	A375_MHC_IP_R2	2	392.9549560546875	3	392.23253	1173.67576	-0.024208	-9.4951E-06	0.097535	3.8256E-05	0.073327	2.8761E-05	392.232511007648	43.529	0.55504	44.302	44.079	44.634	0.7724					19	10	3	0	0	0	0.67901	1	16178	16178		14.957	2.7824	1	7362700			5891	3095	3987	4033	5751	5751					0.09586847091281925
DIGNHWRGLYK	11	Unmodified	_DIGNHWRGLYK_					0	0	0		DNAH7|p.Y803H|1|0.3|ENSG00000118997|chr2:195960744-195960744|A/G|missense_variant	DNAH7|p.Y803H|1|0.3|ENSG00000118997|chr2:195960744-195960744|A/G|missense_variant	DNAH7|p.Y803H|1|0.3|ENSG00000118997|chr2:195960744-195960744|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	454.2953796386719	3	453.570316	1357.68912	-0.42422	-0.00019241	3.9438	0.0017888	3.5196	0.0015964	453.5721315480789	27.023	0.50204	27.023	26.677	27.179	0					12	9	2	0	0	0	0.98748	1	8076	8076		4.4062	0	1	2232700			5892	773	3988	4034	5752	5752					0.024580979232268874
DIGSQLRTI	9	Unmodified	_DIGSQLRTI_					0	0	0			REV__ENSG00000237765|ENST00000422728|FAM200B	REV__ENSG00000237765|ENST00000422728|FAM200B	MULTI-SECPEP	A375_MHC_IP_R2	2	501.0953063964844	2	501.782556	1001.55056	-1.0124	-0.000508	-0.27127	-0.00013612	-1.2837	-0.00064412	501.78219065306126	59.155	0.50666	59.902	59.641	60.148	0.74714					12	9	2	0	0	0	0.60917	1	22367	22367		9.3831	0	1	1112500	+		5893	22767	3989	4035	5753	5753					0.04984554954910436
DIGTRIDTY	9	Unmodified	_DIGTRIDTY_					0	0	0			REV__tr|U7ST00|U7ST00_FUSNUNagDproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01658PE=3SV=1	REV__tr|U7ST00|U7ST00_FUSNUNagDproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01658PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	526.6598510742188	2	527.264196	1052.51384	-0.44225	-0.00023318	-0.82359	-0.00043425	-1.2658	-0.00066743	527.2637097947119	37.642	1.5794	37.642	36.895	38.475	0					27	16	3	0	0	0	0.64808	1	12954	12954		11.64	0	1	6273700	+		5894	28454	3990	4036	5754	5754					-0.01031741661677188
DIGVISKFKI	10	Unmodified	_DIGVISKFKI_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-MSMS	A375_MHC_IP_R2	2	374.6206359863281	3	373.897258	1118.66995	-0.26007	-9.724E-05	-0.13189	-4.9312E-05	-0.39196	-0.00014655	373.89720046038303	28.565	1.5075	29.264	29.08	30.588	0.69872					67	29	4	0	0	0	0.70012	1	9798	9798		7.4771	0.37534	1	133500000	+		5895	20554	3991	4037	5755	5755					0.11535748579603933
DIHDIQNNRLY	11	Unmodified	_DIHDIQNNRLY_					0	0	0			REV__ENSG00000139329|ENST00000266718|LUM	REV__ENSG00000139329|ENST00000266718|LUM	MSMS	A375_MHC_IP_R2	2	700.654052734375	2	700.84949	1399.68443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.338	1	79.082	78.582	79.582	0.74381								0	0	0	0.16249	1	29748	29748		5.7319	1.203	1		+	+	5896	15868	3992	4038	5756	5756					0.0005716898979244434
DIHEPLQLL	9	Unmodified	_DIHEPLQLL_					0	0	0		nc|ENSG00000172954|Q6UWP7-2|LCLAT1;ENSG00000172954|ENST00000379509|LCLAT1;nc|ENSG00000172954|Q6UWP7|LCLAT1	nc|ENSG00000172954|Q6UWP7-2|LCLAT1	nc|ENSG00000172954|Q6UWP7-2|LCLAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	539.7007446289062	2	539.300581	1076.58661	-0.54146	-0.00029201	-0.32594	-0.00017578	-0.8674	-0.00046779	539.300665239601	62.578	0.82012	62.578	62.249	63.069	0					21	15	3	0	0	0	0.55359	1	22601	22601		15.847	1.0089	1	2339300			5897	7752	3993	4039	5757	5757					0.05138012131783398
DIHNMNNGST	10	Unmodified	_DIHNMNNGST_					0	0	0		ENSG00000138336|ENST00000373644|TET1;nc|ENSG00000138336|Q8NFU7-3|TET1;nc|ENSG00000138336|Q8NFU7-2|TET1	ENSG00000138336|ENST00000373644|TET1	ENSG00000138336|ENST00000373644|TET1	MSMS	A375_MHC_IP_R2	2	551.6878662109375	2	551.732737	1101.45092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.802	1	54.553	54.053	55.053	0.75105								0	0	0	0.15479	1	20316	20316		5.2969	0.39987	1				5898	4979	3994	4040	5758	5758					-0.09574630721363064
DIHPESFNLQ	10	Unmodified	_DIHPESFNLQ_					0	0	0		ENSG00000168955|ENST00000304568|TM4SF20	ENSG00000168955|ENST00000304568|TM4SF20	ENSG00000168955|ENST00000304568|TM4SF20	MULTI-MSMS	A375_MHC_IP_R1	1	400.92767333984375	3	400.527894	1198.56185	-0.33738	-0.00013513	-0.33694	-0.00013495	-0.67432	-0.00027008	400.5277032498862	34.34	0.75861	34.34	34.052	34.81	0					25	14	3	0	0	0	0.61662	1	11316	11316		19.626	3.0601	1	4632200			5899	7365	3995	4041	5759	5759					-0.029486677416116436
DIHPESFNLQ	10	Unmodified	_DIHPESFNLQ_					0	0	0		ENSG00000168955|ENST00000304568|TM4SF20	ENSG00000168955|ENST00000304568|TM4SF20	ENSG00000168955|ENST00000304568|TM4SF20	MULTI-SECPEP	A375_MHC_IP_R2	2	400.2798156738281	3	400.527894	1198.56185	-0.52982	-0.00021221	-0.15707	-6.291E-05	-0.68689	-0.00027512	400.5278117517813	33.577	0.55685	34.33	34.146	34.702	0.75225					24	10	3	0	0	0	0.83425	1	12069	12069		14.957	4.0582	1	5335800			5900	7365	3995	4041	5760	5760					-0.029486677416116436
DIHPESFNLQ	10	Unmodified	_DIHPESFNLQ_					0	0	0		ENSG00000168955|ENST00000304568|TM4SF20	ENSG00000168955|ENST00000304568|TM4SF20	ENSG00000168955|ENST00000304568|TM4SF20	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	400.527894	1198.56185	-0.33738	-0.00013513	-0.33694	-0.00013495	-0.67432	-0.00027008	400.5277032498862	34.34	0.75861	34.34	34.052	34.81	0	0.0051907	-0.00015055	NaN	19.626	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4632200			5901	7365	3995	4041							-0.029486677416116436
DIHTFHRFYQY	11	Unmodified	_DIHTFHRFYQY_					0	0	0		ENSG00000108786|ENST00000585807|HSD17B1	ENSG00000108786|ENST00000585807|HSD17B1	ENSG00000108786|ENST00000585807|HSD17B1	MSMS	A375_MHC_IP_R1	1	509.6675109863281	3	509.577359	1525.71025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.464	1	45.464	44.964	45.964	0								0	0	0	0.16297	1	15910	15910		1.3296	0.87513	1				5902	2835	3996	4042	5761	5761					-0.03157936767888714
DIHTNYTLAY	10	Unmodified	_DIHTNYTLAY_					0	0	0			REV__ENSG00000124787|ENST00000380051|RPP40	REV__ENSG00000124787|ENST00000380051|RPP40	MULTI-SECPEP	A375_MHC_IP_R2	2	404.2620849609375	3	404.196144	1209.5666	-0.020235	-8.179E-06	0.97704	0.00039492	0.95681	0.00038674	404.19649142831736	67.139	0.45636	67.875	67.698	68.155	0.73631					11	8	2	0	0	0	0.9269	1	25420	25420		1.7423	0	1	1333900	+		5903	18324	3997	4043	5762	5762					-0.029797835988347288
DIHYEKSITWS	11	Unmodified	_DIHYEKSITWS_					0	0	0			REV__ENSG00000131203|ENST00000518237|IDO1	REV__ENSG00000131203|ENST00000518237|IDO1	MULTI-SECPEP	A375_MHC_IP_R2	2	459.6377868652344	3	460.226103	1377.65648	-0.33776	-0.00015545	0.072167	3.3213E-05	-0.2656	-0.00012223	460.2261152392136	69.639	0.66084	70.373	69.981	70.642	0.73421					26	12	3	0	0	0	0.99819	1	26419	26419		3.5927	0.96144	1	1954400	+		5904	18595	3998	4044	5763	5763					-0.017241539902897784
DIHYEKSITWS	11	Unmodified	_DIHYEKSITWS_					0	0	0			REV__ENSG00000131203|ENST00000518237|IDO1	REV__ENSG00000131203|ENST00000518237|IDO1	MULTI-MATCH	A375_MHC_IP_R1	1		3	460.226103	1377.65648	-0.054965	-2.5296E-05	0.014643	6.7389E-06	-0.040322	-1.8557E-05	460.2263131688354	70.316	0.76561	70.316	69.882	70.648	0	-0.02833	-6.2382E-05	NaN	3.3557	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1875400	+		5905	18595	3998	4044							-0.017241539902897784
DIIKYKKKS	9	Unmodified	_DIIKYKKKS_					0	0	0			REV__tr|U7SGR2|U7SGR2_FUSNUXaa-ProaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02289PE=3SV=1	REV__tr|U7SGR2|U7SGR2_FUSNUXaa-ProaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02289PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	561.2037353515625	2	561.847699	1121.68084	-0.46303	-0.00026015	-2.7519	-0.0015461	-3.2149	-0.0018063	561.844918423789	84.785	0.3067	85.521	85.422	85.729	0.73602					7	5	2	0	0	0	0.74412	1	32232	32232		14.838	0.93222	1	397030	+		5906	28195	3999	4045	5764	5764					0.12487150953870696
DIIRIDVKT	9	Unmodified	_DIIRIDVKT_					0	0	0			REV__IP6K3|p.M367I|1|0.36|ENSG00000161896|chr6:33722852-33722852|C/T|missense_variant	REV__IP6K3|p.M367I|1|0.36|ENSG00000161896|chr6:33722852-33722852|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	357.9535827636719	3	358.21688	1071.62881	-0.4811	-0.00017234	-0.43046	-0.0001542	-0.91156	-0.00032653	358.21672566155996	38.128	0.36021	38.903	38.687	39.047	0.77451					10	6	2	0	0	0	0.79713	1	14047	14047		3.8763	0.28927	1	1453100	+		5907	26797	4000	4046	5765	5765					0.09585987540117458
DIISEKLEAF	10	Unmodified	_DIISEKLEAF_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;ENSG00000152818|ENST00000367545|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	MULTI-SECPEP	A375_MHC_IP_R2	2	583.2110595703125	2	582.810979	1163.6074	-0.37842	-0.00022054	-0.91587	-0.00053378	-1.2943	-0.00075432	582.8101499325276	78.027	0.81779	78.77	78.365	79.183	0.74294					17	15	2	0	0	0	0.8528	1	29655	29655		11.495	0	1	1331900			5908	5986	4001	4047	5766	5766					0.03214557720752964
DIIVLVSN	8	Unmodified	_DIIVLVSN_					0	0	0			REV__PSMD7|p.R114_Y115insIRTSV|1|0.06|ENSG00000103035|chr16:74301636-74301637|-/GATAAGAACATCAGT|inframe_insertion	REV__PSMD7|p.R114_Y115insIRTSV|1|0.06|ENSG00000103035|chr16:74301636-74301637|-/GATAAGAACATCAGT|inframe_insertion	MULTI-SECPEP	A375_MHC_IP_R1	1	871.7815551757812	1	872.50876	871.501483	-0.18633	-0.00016258	-0.83123	-0.00072526	-1.0176	-0.00088783	872.507800426849	105.28	1.3685	105.28	104.64	106.01	0					57	26	4	0	0	0	0.972	1	38483	38483		5.2307	0	1	33038000	+		5909	17245	4002	4048	5767	5767					0.060592666659431416
DIIYTTPQVDR	11	Unmodified	_DIIYTTPQVDR_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-SECPEP	A375_MHC_IP_R1	1	661.2428588867188	2	660.843342	1319.67213	-0.71649	-0.00047348	0.12012	7.938E-05	-0.59637	-0.0003941	660.8434181834444	85.235	0.81277	85.235	84.904	85.717	0					39	15	4	0	0	0	0.97207	1	31180	31180		32.037	32.037	1	18676000			5910	1000	4003	4049	5768	5768					0.025081325267365173
DIKAGAIVKR	10	Unmodified	_DIKAGAIVKR_					0	0	0			REV__ENST00000261254.7_1_12:4410147-4410483:+|nuORF	REV__ENST00000261254.7_1_12:4410147-4410483:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	357.6119384765625	3	357.560869	1069.66078	0.28134	0.0001006	-0.59791	-0.00021379	-0.31656	-0.00011319	357.5606074138808	42.981	0.45872	42.981	42.79	43.249	0					11	8	2	0	0	0	0.71653	1	14998	14998		2.6312	0.34846	1	932330	+		5911	23184	4004	4050	5769	5769					0.12873400013927494
DIKASISLNLP	11	Unmodified	_DIKASISLNLP_					0	0	0		nc|ENSG00000186335|Q495M3-3|SLC36A2;nc|ENSG00000186335|Q495M3-2|SLC36A2;ENSG00000186335|ENST00000335244|SLC36A2	nc|ENSG00000186335|Q495M3-3|SLC36A2	nc|ENSG00000186335|Q495M3-3|SLC36A2	MULTI-SECPEP	A375_MHC_IP_R2	2	586.240478515625	2	585.840071	1169.66559	-0.4565	-0.00026743	0.14621	8.5655E-05	-0.31029	-0.00018178	585.8401280355888	70.084	0.66158	70.818	70.437	71.099	0.73421					27	12	3	0	0	0	0.96045	1	26552	26552		33.445	5.8161	1	7681100			5912	8741	4005	4051	5770	5770					0.08754239366044203
DIKDEEWDTWY	11	Unmodified	_DIKDEEWDTWY_					0	0	0			REV__LRP1B|p.E668K|1|0.36|ENSG00000168702|chr2:141015884-141015884|C/T|missense_variant	REV__LRP1B|p.E668K|1|0.36|ENSG00000168702|chr2:141015884-141015884|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	500.4484558105469	3	500.549023	1498.62524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.872	1	53.872	53.372	54.372	0								0	0	0	0.16334	1	19216	19216		1.3296	0	1		+		5913	26946	4006	4052	5771	5771					-0.10412771815049382
DIKDEEWDTWY	11	Unmodified	_DIKDEEWDTWY_					0	0	0			REV__LRP1B|p.E668K|1|0.36|ENSG00000168702|chr2:141015884-141015884|C/T|missense_variant	REV__LRP1B|p.E668K|1|0.36|ENSG00000168702|chr2:141015884-141015884|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	500.44805908203125	3	500.549023	1498.62524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.97	1	54.97	54.47	55.47	0								0	0	0	0.16334	1	19646	19646		1.3296	0	1		+		5914	26946	4006	4052	5772	5772					-0.10412771815049382
DIKDEEWDTWY	11	Unmodified	_DIKDEEWDTWY_					0	0	0			REV__LRP1B|p.E668K|1|0.36|ENSG00000168702|chr2:141015884-141015884|C/T|missense_variant	REV__LRP1B|p.E668K|1|0.36|ENSG00000168702|chr2:141015884-141015884|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	500.447998046875	3	500.549023	1498.62524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.692	1	56.442	55.942	56.942	0.75041								0	0	0	0.16313	1	21042	21042		2.4348	1.1051	1		+		5915	26946	4006	4052	5773	5773					-0.10412771815049382
DIKDIFRRKEH	11	Unmodified	_DIKDIFRRKEH_					0	0	0			REV__tr|U7T4B0|U7T4B0_FUSNUGlutaconateCoA-transferasesubunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00405PE=3SV=1	REV__tr|U7T4B0|U7T4B0_FUSNUGlutaconateCoA-transferasesubunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00405PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	729.3052978515625	2	728.904599	1455.79465	-0.8494	-0.00061913	1.0904	0.00079476	0.24095	0.00017563	728.9054202492307	98.03	0.35585	98.789	98.589	98.945	0.75977					9	6	2	0	0	0	0.99921	1	37215	37215		0.30703	0.30703	1	1430800	+		5916	28797	4007	4053	5774	5774					0.08498014048836922
DIKDQCLKY	9	Unmodified	_DIKDQCLKY_					0	0	0		ENSG00000217128|ENST00000510461|FNIP1;nc|ENSG00000217128|Q8TF40-2|FNIP1;nc|ENSG00000217128|Q8TF40-3|FNIP1	ENSG00000217128|ENST00000510461|FNIP1	ENSG00000217128|ENST00000510461|FNIP1	MULTI-MSMS	A375_MHC_IP_R2	2	563.2597045898438	2	563.284074	1124.5536	-0.47179	-0.00026575	-1.727	-0.00097281	-2.1988	-0.0012386	563.2835135685668	83.865	0.40929	84.605	84.305	84.715	0.73962					9	7	2	0	0	0	0.60101	1	31783	31783		14.838	2.3067	1	712510			5917	9653	4008	4054	5775	5775					-0.003699379826002769
DIKDQCLKY	9	Unmodified	_DIKDQCLKY_					0	0	0		ENSG00000217128|ENST00000510461|FNIP1;nc|ENSG00000217128|Q8TF40-2|FNIP1;nc|ENSG00000217128|Q8TF40-3|FNIP1	ENSG00000217128|ENST00000510461|FNIP1	ENSG00000217128|ENST00000510461|FNIP1	MULTI-MATCH	A375_MHC_IP_R1	1		2	563.284074	1124.5536	-0.63587	-0.00035818	-1.0545	-0.00059399	-1.6904	-0.00095217	563.2828692549018	84.707	0.20388	84.707	84.596	84.8	0	0.051289	0.00063533	NaN	14.838	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	646060			5918	9653	4008	4054							-0.003699379826002769
DIKDWEDRFYL	11	Unmodified	_DIKDWEDRFYL_					0	0	0		nc|ENSG00000122420|P43088-6|PTGFR;nc|ENSG00000122420|P43088-7|PTGFR;nc|ENSG00000122420|P43088-3|PTGFR;nc|ENSG00000122420|P43088-4|PTGFR;nc|ENSG00000122420|P43088-5|PTGFR;nc|ENSG00000122420|P43088-2|PTGFR;ENSG00000122420|ENST00000370757|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	MSMS	A375_MHC_IP_R1	1	500.47540283203125	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.378	1	72.378	71.878	72.878	0								0	0	0	0.16307	1	26331	26331		1.1098	0	1				5919	3781	4009	4055	5776	5776					-0.02016195927467379
DIKDWEDRFYL	11	Unmodified	_DIKDWEDRFYL_					0	0	0		nc|ENSG00000122420|P43088-6|PTGFR;nc|ENSG00000122420|P43088-7|PTGFR;nc|ENSG00000122420|P43088-3|PTGFR;nc|ENSG00000122420|P43088-4|PTGFR;nc|ENSG00000122420|P43088-5|PTGFR;nc|ENSG00000122420|P43088-2|PTGFR;ENSG00000122420|ENST00000370757|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	MSMS	A375_MHC_IP_R1	1	500.4749450683594	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.666	1	82.666	82.166	83.166	0								0	0	0	0.16297	1	30234	30234		1.3296	0	1				5920	3781	4009	4055	5777	5777					-0.02016195927467379
DIKDWEDRFYL	11	Unmodified	_DIKDWEDRFYL_					0	0	0		nc|ENSG00000122420|P43088-6|PTGFR;nc|ENSG00000122420|P43088-7|PTGFR;nc|ENSG00000122420|P43088-3|PTGFR;nc|ENSG00000122420|P43088-4|PTGFR;nc|ENSG00000122420|P43088-5|PTGFR;nc|ENSG00000122420|P43088-2|PTGFR;ENSG00000122420|ENST00000370757|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	MSMS	A375_MHC_IP_R1	1	500.474853515625	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.749	1	88.749	88.249	89.249	0								0	0	0	0.16297	1	32588	32588		1.3296	0	1				5921	3781	4009	4055	5778	5778					-0.02016195927467379
DIKDWEDRFYL	11	Unmodified	_DIKDWEDRFYL_					0	0	0		nc|ENSG00000122420|P43088-6|PTGFR;nc|ENSG00000122420|P43088-7|PTGFR;nc|ENSG00000122420|P43088-3|PTGFR;nc|ENSG00000122420|P43088-4|PTGFR;nc|ENSG00000122420|P43088-5|PTGFR;nc|ENSG00000122420|P43088-2|PTGFR;ENSG00000122420|ENST00000370757|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	MSMS	A375_MHC_IP_R1	1	500.474853515625	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.814	1	93.814	93.314	94.314	0								0	0	0	0.16297	1	34484	34484		1.3296	0	1				5922	3781	4009	4055	5779	5779					-0.02016195927467379
DIKDWEDRFYL	11	Unmodified	_DIKDWEDRFYL_					0	0	0		nc|ENSG00000122420|P43088-6|PTGFR;nc|ENSG00000122420|P43088-7|PTGFR;nc|ENSG00000122420|P43088-3|PTGFR;nc|ENSG00000122420|P43088-4|PTGFR;nc|ENSG00000122420|P43088-5|PTGFR;nc|ENSG00000122420|P43088-2|PTGFR;ENSG00000122420|ENST00000370757|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	MSMS	A375_MHC_IP_R1	1	500.4747619628906	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.373	1	94.373	93.873	94.873	0								0	0	0	0.16297	1	34688	34688		1.3296	0	1				5923	3781	4009	4055	5780	5780					-0.02016195927467379
DIKDWEDRFYL	11	Unmodified	_DIKDWEDRFYL_					0	0	0		nc|ENSG00000122420|P43088-6|PTGFR;nc|ENSG00000122420|P43088-7|PTGFR;nc|ENSG00000122420|P43088-3|PTGFR;nc|ENSG00000122420|P43088-4|PTGFR;nc|ENSG00000122420|P43088-5|PTGFR;nc|ENSG00000122420|P43088-2|PTGFR;ENSG00000122420|ENST00000370757|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	MSMS	A375_MHC_IP_R1	1	500.4748229980469	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.863	1	96.863	96.363	97.363	0								0	0	0	0.16297	1	35594	35594		1.3296	0	1				5924	3781	4009	4055	5781	5781					-0.02016195927467379
DIKDWEDRFYL	11	Unmodified	_DIKDWEDRFYL_					0	0	0		nc|ENSG00000122420|P43088-6|PTGFR;nc|ENSG00000122420|P43088-7|PTGFR;nc|ENSG00000122420|P43088-3|PTGFR;nc|ENSG00000122420|P43088-4|PTGFR;nc|ENSG00000122420|P43088-5|PTGFR;nc|ENSG00000122420|P43088-2|PTGFR;ENSG00000122420|ENST00000370757|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	MSMS	A375_MHC_IP_R1	1	500.4749450683594	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.092	1	99.092	98.592	99.592	0								0	0	0	0.16249	1	36404	36404		2.6312	1.1761	1				5925	3781	4009	4055	5782	5782					-0.02016195927467379
DIKDWEDRFYL	11	Unmodified	_DIKDWEDRFYL_					0	0	0		nc|ENSG00000122420|P43088-6|PTGFR;nc|ENSG00000122420|P43088-7|PTGFR;nc|ENSG00000122420|P43088-3|PTGFR;nc|ENSG00000122420|P43088-4|PTGFR;nc|ENSG00000122420|P43088-5|PTGFR;nc|ENSG00000122420|P43088-2|PTGFR;ENSG00000122420|ENST00000370757|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	MSMS	A375_MHC_IP_R1	1	500.4747009277344	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.03	1	102.03	101.53	102.53	0								0	0	0	0.16297	1	37494	37494		1.3296	0	1				5926	3781	4009	4055	5783	5783					-0.02016195927467379
DIKDWEDRFYL	11	Unmodified	_DIKDWEDRFYL_					0	0	0		nc|ENSG00000122420|P43088-6|PTGFR;nc|ENSG00000122420|P43088-7|PTGFR;nc|ENSG00000122420|P43088-3|PTGFR;nc|ENSG00000122420|P43088-4|PTGFR;nc|ENSG00000122420|P43088-5|PTGFR;nc|ENSG00000122420|P43088-2|PTGFR;ENSG00000122420|ENST00000370757|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	MSMS	A375_MHC_IP_R1	1	500.4749450683594	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.2	1	103.2	102.7	103.7	0								0	0	0	0.16297	1	37920	37920		1.3296	0	1				5927	3781	4009	4055	5784	5784					-0.02016195927467379
DIKDWEDRFYL	11	Unmodified	_DIKDWEDRFYL_					0	0	0		nc|ENSG00000122420|P43088-6|PTGFR;nc|ENSG00000122420|P43088-7|PTGFR;nc|ENSG00000122420|P43088-3|PTGFR;nc|ENSG00000122420|P43088-4|PTGFR;nc|ENSG00000122420|P43088-5|PTGFR;nc|ENSG00000122420|P43088-2|PTGFR;ENSG00000122420|ENST00000370757|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	MSMS	A375_MHC_IP_R1	1	500.4752197265625	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.78	1	103.78	103.28	104.28	0								0	0	0	0.16297	1	38110	38110		1.3296	0	1				5928	3781	4009	4055	5785	5785					-0.02016195927467379
DIKDWEDRFYL	11	Unmodified	_DIKDWEDRFYL_					0	0	0		nc|ENSG00000122420|P43088-6|PTGFR;nc|ENSG00000122420|P43088-7|PTGFR;nc|ENSG00000122420|P43088-3|PTGFR;nc|ENSG00000122420|P43088-4|PTGFR;nc|ENSG00000122420|P43088-5|PTGFR;nc|ENSG00000122420|P43088-2|PTGFR;ENSG00000122420|ENST00000370757|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	MSMS	A375_MHC_IP_R2	2	500.4745178222656	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.651	1	83.394	82.894	83.894	0.74293								0	0	0	0.16297	1	31398	31398		1.3296	0	1				5929	3781	4009	4055	5786	5786					-0.02016195927467379
DIKDWEDRFYL	11	Unmodified	_DIKDWEDRFYL_					0	0	0		nc|ENSG00000122420|P43088-6|PTGFR;nc|ENSG00000122420|P43088-7|PTGFR;nc|ENSG00000122420|P43088-3|PTGFR;nc|ENSG00000122420|P43088-4|PTGFR;nc|ENSG00000122420|P43088-5|PTGFR;nc|ENSG00000122420|P43088-2|PTGFR;ENSG00000122420|ENST00000370757|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	MSMS	A375_MHC_IP_R2	2	500.47442626953125	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.928	1	95.675	95.175	96.175	0.74696								0	0	0	0.16297	1	36067	36067		1.3296	0.11481	1				5930	3781	4009	4055	5787	5787					-0.02016195927467379
DIKDWEDRFYL	11	Unmodified	_DIKDWEDRFYL_					0	0	0		nc|ENSG00000122420|P43088-6|PTGFR;nc|ENSG00000122420|P43088-7|PTGFR;nc|ENSG00000122420|P43088-3|PTGFR;nc|ENSG00000122420|P43088-4|PTGFR;nc|ENSG00000122420|P43088-5|PTGFR;nc|ENSG00000122420|P43088-2|PTGFR;ENSG00000122420|ENST00000370757|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	MSMS	A375_MHC_IP_R2	2	500.4752197265625	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.554	1	96.304	95.804	96.804	0.75045								0	0	0	0.1624	1	36295	36295		2.8433	0.21205	1				5931	3781	4009	4055	5788	5788					-0.02016195927467379
DIKDWEDRFYL	11	Unmodified	_DIKDWEDRFYL_					0	0	0		nc|ENSG00000122420|P43088-6|PTGFR;nc|ENSG00000122420|P43088-7|PTGFR;nc|ENSG00000122420|P43088-3|PTGFR;nc|ENSG00000122420|P43088-4|PTGFR;nc|ENSG00000122420|P43088-5|PTGFR;nc|ENSG00000122420|P43088-2|PTGFR;ENSG00000122420|ENST00000370757|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	MSMS	A375_MHC_IP_R2	2	500.4753112792969	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.153	1	96.903	96.403	97.403	0.75045								0	0	0	0.16297	1	36512	36512		1.3296	0.21989	1				5932	3781	4009	4055	5789	5789					-0.02016195927467379
DIKDWEDRFYL	11	Unmodified	_DIKDWEDRFYL_					0	0	0		nc|ENSG00000122420|P43088-6|PTGFR;nc|ENSG00000122420|P43088-7|PTGFR;nc|ENSG00000122420|P43088-3|PTGFR;nc|ENSG00000122420|P43088-4|PTGFR;nc|ENSG00000122420|P43088-5|PTGFR;nc|ENSG00000122420|P43088-2|PTGFR;ENSG00000122420|ENST00000370757|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	MSMS	A375_MHC_IP_R2	2	500.4748840332031	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.799	1	97.555	97.055	98.055	0.75586								0	0	0	0.16297	1	36746	36746		1.3296	0	1				5933	3781	4009	4055	5790	5790					-0.02016195927467379
DIKDWEDRFYL	11	Unmodified	_DIKDWEDRFYL_					0	0	0		nc|ENSG00000122420|P43088-6|PTGFR;nc|ENSG00000122420|P43088-7|PTGFR;nc|ENSG00000122420|P43088-3|PTGFR;nc|ENSG00000122420|P43088-4|PTGFR;nc|ENSG00000122420|P43088-5|PTGFR;nc|ENSG00000122420|P43088-2|PTGFR;ENSG00000122420|ENST00000370757|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	MSMS	A375_MHC_IP_R2	2	500.4748229980469	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.92	1	98.677	98.177	99.177	0.75692								0	0	0	0.16297	1	37158	37158		1.3296	0.11481	1				5934	3781	4009	4055	5791	5791					-0.02016195927467379
DIKDWEDRFYL	11	Unmodified	_DIKDWEDRFYL_					0	0	0		nc|ENSG00000122420|P43088-6|PTGFR;nc|ENSG00000122420|P43088-7|PTGFR;nc|ENSG00000122420|P43088-3|PTGFR;nc|ENSG00000122420|P43088-4|PTGFR;nc|ENSG00000122420|P43088-5|PTGFR;nc|ENSG00000122420|P43088-2|PTGFR;ENSG00000122420|ENST00000370757|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	MSMS	A375_MHC_IP_R2	2	500.4746398925781	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.47	1	102.24	101.74	102.74	0.76428								0	0	0	0.16297	1	38462	38462		1.3296	0	1				5935	3781	4009	4055	5792	5792					-0.02016195927467379
DIKDWEDRFYL	11	Unmodified	_DIKDWEDRFYL_					0	0	0		nc|ENSG00000122420|P43088-6|PTGFR;nc|ENSG00000122420|P43088-7|PTGFR;nc|ENSG00000122420|P43088-3|PTGFR;nc|ENSG00000122420|P43088-4|PTGFR;nc|ENSG00000122420|P43088-5|PTGFR;nc|ENSG00000122420|P43088-2|PTGFR;ENSG00000122420|ENST00000370757|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	MSMS	A375_MHC_IP_R2	2	500.4749450683594	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.03	1	102.79	102.29	103.29	0.76428								0	0	0	0.16297	1	38669	38669		1.3296	0.11481	1				5936	3781	4009	4055	5793	5793					-0.02016195927467379
DIKDWEDRFYL	11	Unmodified	_DIKDWEDRFYL_					0	0	0		nc|ENSG00000122420|P43088-6|PTGFR;nc|ENSG00000122420|P43088-7|PTGFR;nc|ENSG00000122420|P43088-3|PTGFR;nc|ENSG00000122420|P43088-4|PTGFR;nc|ENSG00000122420|P43088-5|PTGFR;nc|ENSG00000122420|P43088-2|PTGFR;ENSG00000122420|ENST00000370757|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	MSMS	A375_MHC_IP_R2	2	500.4749755859375	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.6	1	103.36	102.86	103.86	0.76428								0	0	0	0.16297	1	38871	38871		1.3296	0.21989	1				5937	3781	4009	4055	5794	5794					-0.02016195927467379
DIKGDIIY	8	Unmodified	_DIKGDIIY_					0	0	0			REV__tr|U7SM31|U7SM31_FUSNULipoprotein-releasingsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02063PE=3SV=1	REV__tr|U7SM31|U7SM31_FUSNULipoprotein-releasingsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02063PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	469.15509033203125	2	468.755475	935.496398	-0.96707	-0.00045332	0.28357	0.00013292	-0.6835	-0.00032039	468.75561385309135	36.512	0.5592	37.283	37.005	37.564	0.7709					17	10	2	0	0	0	0.90775	1	13350	13350		20.454	11.86	1	2173200	+		5938	28287	4010	4056	5795	5795					0.02606962803326951
DIKGNIKFYDH	11	Unmodified	_DIKGNIKFYDH_					0	0	0		ENST00000535257.1_1_12:122391860-122397069:+|nuORF;nc|ENSG00000158023|Q8TBY9-2|CFAP251;ENSG00000158023|ENST00000288912|CFAP251	ENST00000535257.1_1_12:122391860-122397069:+|nuORF	ENST00000535257.1_1_12:122391860-122397069:+|nuORF	MSMS	A375_MHC_IP_R1	1	675.30078125	2	675.346052	1348.67755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.981	1	92.981	92.481	93.481	0								0	0	0	0.16258	1	34175	34175		5.2969	1.3525	1				5939	13226	4011	4057	5796	5796					0.017158561092401214
DIKHLIQSG	9	Unmodified	_DIKHLIQSG_					0	0	0			REV__nc|ENSG00000061938|Q07912-3|TNK2	REV__nc|ENSG00000061938|Q07912-3|TNK2	MULTI-SECPEP	A375_MHC_IP_R1	1	506.1846923828125	2	505.785099	1009.55564	-0.12392	-6.2677E-05	-0.28048	-0.00014186	-0.4044	-0.00020454	505.7849125422433	44.34	1.1731	44.34	43.959	45.132	0					65	22	5	0	0	0	0.11711	1	15395	15395		51.63	13.454	1	55105000	+		5940	16453	4012	4058	5797	5797					0.05124858817544009
DIKHLIQSG	9	Unmodified	_DIKHLIQSG_					0	0	0			REV__nc|ENSG00000061938|Q07912-3|TNK2	REV__nc|ENSG00000061938|Q07912-3|TNK2	MULTI-SECPEP	A375_MHC_IP_R2	2	506.185302734375	2	505.785099	1009.55564	-0.53022	-0.00026818	0.28282	0.00014304	-0.2474	-0.00012513	505.78518649425945	43.67	0.95933	44.439	44.076	45.035	0.76909					45	18	3	0	0	0	0.14572	1	16211	16211		45.7	7.524	1	41871000	+		5941	16453	4012	4058	5798	5798					0.05124858817544009
DIKKNISW	8	Unmodified	_DIKKNISW_					0	0	0		tr|U7SXN7|U7SXN7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00907PE=4SV=1	tr|U7SXN7|U7SXN7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00907PE=4SV=1	tr|U7SXN7|U7SXN7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00907PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	502.6930847167969	2	502.282192	1002.54983	-0.44318	-0.0002226	0.00027071	1.3597E-07	-0.44291	-0.00022247	502.28237138233993	76.446	0.45387	76.446	76.168	76.622	0					14	8	2	0	0	0	0.7256	1	27831	27831		26.884	2.8631	1	1317000			5942	29829	4013	4059	5799	5799					0.048657603058586574
DIKKPMDVYKI	11	Unmodified	_DIKKPMDVYKI_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5;ENST00000420610.1_1_Y:14088999-14090148:+|nuORF	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MSMS	A375_MHC_IP_R1	1	675.2525024414062	2	675.378506	1348.74246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.576	1	96.576	96.076	97.076	0								0	0	0	0.16265	1	35491	35491		4.897	1.9018	1				5943	2325	4014	4060	5800	5800					0.08203714590854361
DIKNRNVTI	9	Unmodified	_DIKNRNVTI_					0	0	0			REV__tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	REV__tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	536.2076416015625	2	536.809105	1071.60366	-0.67623	-0.000363	-2.0076	-0.0010777	-2.6839	-0.0014407	536.8081489456142	47.017	0.56015	47.778	47.513	48.073	0.76128					14	10	2	0	0	0	0.65246	1	17597	17597		10.824	0	1	1187300	+		5944	28228	4015	4061	5801	5801					0.07071932737562747
DIKPLENW	8	Unmodified	_DIKPLENW_					0	0	0			REV__SPHKAP|p.V451D|1|0.37|ENSG00000153820|chr2:228019502-228019502|A/T|missense_variant	REV__SPHKAP|p.V451D|1|0.37|ENSG00000153820|chr2:228019502-228019502|A/T|missense_variant	MSMS	A375_MHC_IP_R2	2	507.69720458984375	2	507.766374	1013.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.295	1	68.031	67.531	68.531	0.73631								0	0	0	0.16876	1	25493	25493		24.021	2.2739	1		+		5945	28033	4016	4062	5802	5802					0.01197767551900597
DIKPVLHLI	9	Unmodified	_DIKPVLHLI_					0	0	0			REV__PAPOLA|p.N216K|1|0.09|ENSG00000090060|chr14:96532371-96532371|C/G|missense_variant	REV__PAPOLA|p.N216K|1|0.09|ENSG00000090060|chr14:96532371-96532371|C/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	524.6891479492188	2	524.331685	1046.64882	-0.31707	-0.00016625	-0.47561	-0.00024938	-0.79269	-0.00041563	524.331217265284	94.352	0.50696	95.097	94.717	95.224	0.74473					15	9	2	0	0	0	0.67483	1	35749	35749		10.074	0	1	838960	+		5946	27713	4017	4063	5803	5803					0.1273578327075029
DIKPVLHLI	9	Unmodified	_DIKPVLHLI_					0	0	0			REV__PAPOLA|p.N216K|1|0.09|ENSG00000090060|chr14:96532371-96532371|C/G|missense_variant	REV__PAPOLA|p.N216K|1|0.09|ENSG00000090060|chr14:96532371-96532371|C/G|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	524.331685	1046.64882	-0.59222	-0.00031052	-0.021982	-1.1526E-05	-0.6142	-0.00032204	524.8332590909453	95.338	0.4587	95.338	94.956	95.415	0	0.12055	0.00027704	NaN	10.074	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1731200	+		5947	27713	4017	4063							0.1273578327075029
DIKRAMNLIHT	11	Unmodified	_DIKRAMNLIHT_					0	0	0			REV__SSH3|p.E364K|1|0.17|ENSG00000172830|chr11:67309425-67309425|G/A|missense_variant	REV__SSH3|p.E364K|1|0.17|ENSG00000172830|chr11:67309425-67309425|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	656.1217651367188	2	656.363721	1310.71289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.695	1	89.695	89.195	90.195	0								0	0	0	0.16213	1	32952	32952		7.609	2.3121	1		+		5948	28048	4018	4064	5804	5804					0.06996195365400126
DIKTYKKIIT	10	Unmodified	_DIKTYKKIIT_					0	0	0			REV__tr|U7T3R9|U7T3R9_FUSNUUDP-3-O-acylglucosamineN-acyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxDPE=3SV=1	REV__tr|U7T3R9|U7T3R9_FUSNUUDP-3-O-acylglucosamineN-acyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxDPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	611.3531494140625	2	611.873914	1221.73327	-0.30501	-0.00018663	-2.0219	-0.0012371	-2.3269	-0.0014238	611.8751638555773	99.408	0.25462	100.17	100.01	100.27	0.75977					6	4	2	0	0	0	0.93961	1	37676	37676		0.30703	0	1	1308100	+		5949	28786	4019	4065	5805	5805					0.1312768929685717
DIKVDWNH	8	Unmodified	_DIKVDWNH_					0	0	0		CRB1|p.I648V|1|0.42|ENSG00000134376|chr1:197421770-197421770|A/G|missense_variant	CRB1|p.I648V|1|0.42|ENSG00000134376|chr1:197421770-197421770|A/G|missense_variant	CRB1|p.I648V|1|0.42|ENSG00000134376|chr1:197421770-197421770|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	514.200439453125	2	513.753798	1025.49304	-0.64345	-0.00033058	0.58841	0.0003023	-0.055048	-2.8281E-05	513.754027724395	46.74	0.81392	46.74	46.345	47.159	0					30	15	3	0	0	0	0.7754	1	16334	16334		11.64	3.047	1	5553700			5950	660	4020	4066	5806	5806					-0.01868287250681533
DIKWVCQDL	9	Unmodified	_DIKWVCQDL_					0	0	0		ENSG00000151952|ENST00000422113|TMEM132D;nc|ENSG00000151952|Q14C87-2|TMEM132D	ENSG00000151952|ENST00000422113|TMEM132D	ENSG00000151952|ENST00000422113|TMEM132D	MULTI-MSMS	A375_MHC_IP_R1	1	561.2680053710938	2	560.278792	1118.54303	-0.69124	-0.00038728	0.49612	0.00027796	-0.19512	-0.00010932	560.2796584104125	86.009	0.70966	86.009	85.667	86.376	0					25	13	3	0	0	0	0.69674	1	31459	31459		7.2892	0	1	2574000			5951	5937	4021	4067	5807	5807					-0.011499206370217507
DILADDFFNN	10	Unmodified	_DILADDFFNN_					0	0	0			REV__nc|ENSG00000159082|O43426-4|SYNJ1	REV__nc|ENSG00000159082|O43426-4|SYNJ1	MULTI-SECPEP	A375_MHC_IP_R1	1	395.60498046875	3	395.180383	1182.51932	0.15309	6.05E-05	-0.040252	-1.5907E-05	0.11284	4.4593E-05	395.18036190508957	35.459	0.40723	35.459	35.218	35.625	0					10	7	2	0	0	0	0.94163	1	11849	11849		6.1918	1.2948	1	939170	+		5952	20099	4022	4068	5808	5808					-0.06464062869827103
DILDLGKHKL	10	Unmodified	_DILDLGKHKL_					0	0	0		tr|U7SFU1|U7SFU1_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02233PE=3SV=1	tr|U7SFU1|U7SFU1_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02233PE=3SV=1	tr|U7SFU1|U7SFU1_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02233PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	383.9190979003906	3	384.564279	1150.67101	0.13932	5.3579E-05	-1.0959	-0.00042146	-0.95662	-0.00036788	384.56377655108	40.988	0.45241	40.988	40.762	41.215	0					12	8	2	0	0	0	0.93578	1	14062	14062		0.56317	0.15491	1	1448000			5953	29394	4023	4069	5809	5809					0.10169962948521061
DILDQLRDKRH	11	Unmodified	_DILDQLRDKRH_					0	0	0			REV__ENSG00000157741|ENST00000473989|UBN2	REV__ENSG00000157741|ENST00000473989|UBN2	MULTI-MSMS	A375_MHC_IP_R2	2	705.37255859375	2	704.886407	1407.75826	-0.60484	-0.00042634	2.0162	0.0014212	1.4113	0.00099484	704.8879081152096	117.8	0.55666	118.41	117.99	118.54	0.60909					16	10	2	0	0	0	0.73378	1	44574	44574		5.2969	1.1074	1	32236000	+		5954	20040	4024	4070	5810	5810					0.07069137152120675
DILEKYIKF	9	Unmodified	_DILEKYIKF_					0	0	0		nc|ENSG00000187239|Q96RU3-4|FNBP1;nc|ENSG00000187239|Q96RU3-3|FNBP1;nc|ENSG00000187239|Q96RU3-5|FNBP1;nc|ENSG00000187239|Q96RU3-2|FNBP1;ENSG00000187239|ENST00000446176|FNBP1	nc|ENSG00000187239|Q96RU3-4|FNBP1	nc|ENSG00000187239|Q96RU3-4|FNBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	584.2133178710938	2	584.834257	1167.65396	-0.45954	-0.00026875	0.16026	9.3724E-05	-0.29928	-0.00017503	584.8342659364522	83.104	0.3036	83.844	83.694	83.998	0.73962					9	5	2	0	0	0	0.46045	1	31640	31640		29.082	3.6823	1	3211600			5955	8814	4025	4071	5811	5811					0.07684042342702924
DILENKESW	9	Unmodified	_DILENKESW_					0	0	0		ENSG00000198056|ENST00000338193|PRIM1	ENSG00000198056|ENST00000338193|PRIM1	ENSG00000198056|ENST00000338193|PRIM1	MULTI-SECPEP	A375_MHC_IP_R1	1	567.152587890625	2	567.277303	1132.54005	-0.29227	-0.0001658	0.6572	0.00037281	0.36492	0.00020701	567.2771034937739	55.794	0.50796	55.794	55.635	56.143	0					11	9	2	0	0	0	0.60917	1	20005	20005		19.257	0	1	1241300			5956	9225	4026	4072	5812	5812					-0.020914724902013404
DILFFNFT	8	Unmodified	_DILFFNFT_					0	0	0		nc|ENSG00000101251|Q5TEA6-2|SEL1L2;ENSG00000101251|ENST00000284951|SEL1L2	nc|ENSG00000101251|Q5TEA6-2|SEL1L2	nc|ENSG00000101251|Q5TEA6-2|SEL1L2	MSMS	A375_MHC_IP_R2	2	508.68731689453125	2	508.758018	1015.50148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.273	1	59.022	58.522	59.522	0.74894								0	0	0	0.16876	1	22044	22044		24.674	4.2203	1				5957	2274	4027	4073	5813	5813					-0.005647333340562
DILIKKLKQKF	11	Unmodified	_DILIKKLKQKF_					0	0	0		ENST00000442354.1_1_9:44052481-44067763:-|nuORF	ENST00000442354.1_1_9:44052481-44067763:-|nuORF	ENST00000442354.1_1_9:44052481-44067763:-|nuORF	MSMS	A375_MHC_IP_R1	1	687.4464111328125	2	687.44758	1372.88061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.95	1	119.95	119.45	120.45	0								0	0	0	0.16258	1	44396	44396		5.2969	2.3016	1				5958	11991	4028	4074	5814	5814					0.20908205901628207
DILISWGIDV	10	Unmodified	_DILISWGIDV_					0	0	0		nc|ENSG00000164122|Q8WWX0-2|ASB5;ENSG00000164122|ENST00000296525|ASB5	nc|ENSG00000164122|Q8WWX0-2|ASB5	nc|ENSG00000164122|Q8WWX0-2|ASB5	MULTI-SECPEP	A375_MHC_IP_R2	2	566.1715087890625	2	565.808239	1129.60193	-0.46866	-0.00026517	4.0319	0.0022813	3.5633	0.0020161	566.3133793325339	39.755	0.30516	40.53	40.371	40.676	0.77451					6	5	2	0	0	0	0.91328	1	14708	14708		14.838	8.6325	1	838490			5959	6785	4029	4075	5815	5815					0.042308789289336346
DILKKRIKKKE	11	Unmodified	_DILKKRIKKKE_					0	0	0		tr|U7SP84|U7SP84_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01765PE=4SV=1	tr|U7SP84|U7SP84_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01765PE=4SV=1	tr|U7SP84|U7SP84_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01765PE=4SV=1	MSMS	A375_MHC_IP_R1	1	699.9694213867188	2	699.961386	1397.90822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.305	1	81.305	80.805	81.805	0								0	0	0	0.16312	1	29709	29709		2.4985	1.5362	1				5960	29572	4030	4076	5816	5816					0.22518109161887878
DILKKSSHA	9	Unmodified	_DILKKSSHA_					0	0	0		ENSG00000130638|ENST00000252934|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	MULTI-MSMS	A375_MHC_IP_R1	1	500.2340393066406	2	499.785099	997.555644	-0.14741	-7.3674E-05	0.3222	0.00016103	0.17478	8.7355E-05	499.7850948222583	45.509	0.30359	45.509	45.434	45.738	0					9	5	2	0	0	0	0.51106	1	15929	15929		19.257	2.1441	1	1542500			5961	4258	4031	4077	5817	5817					0.05676858817514585
DILKLHSRFY	10	Unmodified	_DILKLHSRFY_					0	0	0		ENSG00000136425|ENST00000258930|CIB2;nc|ENSG00000136425|O75838-2|CIB2	ENSG00000136425|ENST00000258930|CIB2	ENSG00000136425|ENST00000258930|CIB2	MULTI-SECPEP	A375_MHC_IP_R2	2	431.1184387207031	3	431.243429	1290.70846	-0.235	-0.00010134	-0.4793	-0.00020669	-0.7143	-0.00030804	431.2431155140849	75.672	0.46031	76.412	76.129	76.589	0.74052					19	8	3	0	0	0	0.93406	1	28749	28749		9.544	3.3096	1	2222900			5962	4786	4032	4078	5818	5818					0.07473054214142394
DILKREQDE	9	Unmodified	_DILKREQDE_					0	0	0			REV__CON__P13717	REV__CON__P13717	MSMS	A375_MHC_IP_R1	1	382.6083984375	3	382.531415	1144.57242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.828	1	34.828	34.328	35.328	0								0	0	0	0.15061	1	11519	11519		20.581	2.2078	1		+	+	5963	15859	4033	4079	5819	5819					0.005913149127991346
DILLLVQDKTK	11	Unmodified	_DILLLVQDKTK_					0	0	0			REV__nc|ENSG00000197959|Q9UQ16-5|DNM3	REV__nc|ENSG00000197959|Q9UQ16-5|DNM3	MULTI-MSMS	A375_MHC_IP_R1	1	643.0455322265625	2	643.389928	1284.7653	-0.85494	-0.00055006	-0.63831	-0.00041068	-1.4932	-0.00096074	643.3891995737017	146.82	0.33792	146.82	146.66	147	0					56	31	2	0	0	0	0.73906	1	56102	56102		0.26902	0.26902	1	118890	+		5964	22331	4034	4080	5820	5820					0.1343105697997089
DILLLVQDKTK	11	Unmodified	_DILLLVQDKTK_					0	0	0			REV__nc|ENSG00000197959|Q9UQ16-5|DNM3	REV__nc|ENSG00000197959|Q9UQ16-5|DNM3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	643.389928	1284.7653	-0.85494	-0.00055006	-0.63831	-0.00041068	-1.4932	-0.00096074	643.3891995737017	146.82	0.33792	146.82	146.66	147	0	0.013101	0.00025211	NaN	0.26902	56	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118890	+		5965	22331	4034	4080							0.1343105697997089
DILLLVQDKTK	11	Unmodified	_DILLLVQDKTK_					0	0	0			REV__nc|ENSG00000197959|Q9UQ16-5|DNM3	REV__nc|ENSG00000197959|Q9UQ16-5|DNM3	MULTI-MATCH	A375_MHC_IP_R2	2		2	643.389928	1284.7653	-0.51923	-0.00033407	-1.2532	-0.00080632	-1.7725	-0.0011404	643.3886598267923	146.77	0.25018	146.79	146.71	146.96	0.019897	-0.013101	-0.00053917	NaN	0.26902	38	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104010	+		5966	22331	4034	4080							0.1343105697997089
DILNEDKK	8	Unmodified	_DILNEDKK_					0	0	0			REV__tr|U7T6N5|U7T6N5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00309PE=4SV=1	REV__tr|U7T6N5|U7T6N5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00309PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	489.1819763183594	2	487.761289	973.508025	-0.67633	-0.00032989	1.212	0.00059119	0.53571	0.0002613	487.7613613551872	68.083	0.8605	68.083	67.603	68.463	0					58	16	5	0	0	0	0.74543	1	24666	24666		21.537	1.0834	1	12102000	+		5967	28868	4035	4081	5821	5821					0.02021159826665553
DILQVAVKL	9	Unmodified	_DILQVAVKL_					0	0	0		nc|ENSG00000172508|A5YM72|CARNS1;nc|ENSG00000172508|A5YM72-4|CARNS1;ENSG00000172508|ENST00000687366|CARNS1;nc|ENSG00000172508|A5YM72-3|CARNS1	nc|ENSG00000172508|A5YM72|CARNS1	nc|ENSG00000172508|A5YM72|CARNS1	MULTI-SECPEP	A375_MHC_IP_R1	1	499.2407531738281	2	499.815867	997.617182	-0.67352	-0.00033663	-0.063536	-3.1756E-05	-0.73705	-0.00036839	499.8157610076596	26.776	0.35171	26.776	26.626	26.978	0					9	6	2	0	0	0	0.78348	1	7988	7988		1.8442	0	1	1317800			5968	7717	4036	4082	5822	5822					0.11827790516804271
DILQYENSREF	11	Unmodified	_DILQYENSREF_					0	0	0			REV__ENST00000590972.1_1_18:11752889-11825012:+|nuORF	REV__ENST00000590972.1_1_18:11752889-11825012:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	472.6897277832031	3	471.893013	1412.65721	-0.3766	-0.00017772	0.26547	0.00012527	-0.11113	-5.2443E-05	472.2274355316108	43.862	0.50378	44.631	44.38	44.883	0.7691					13	9	2	0	0	0	1.0005	1	16267	16267		1.1098	0	1	1379800	+		5969	19260	4037	4083	5823	5823					-0.03261359341240677
DILSLESSQKK	11	Unmodified	_DILSLESSQKK_					0	0	0		HMGXB4|p.S89L|1|0.76|ENSG00000100281|chr22:35264654-35264654|C/T|missense_variant	HMGXB4|p.S89L|1|0.76|ENSG00000100281|chr22:35264654-35264654|C/T|missense_variant	HMGXB4|p.S89L|1|0.76|ENSG00000100281|chr22:35264654-35264654|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	624.7435302734375	2	624.345717	1246.67688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.55	1	69.55	69.05	70.05	0								0	0	0	0.16191	1	25241	25241		8.7454	2.0222	1				5970	14128	4038	4084	5824	5824					0.063410166695121
DILSRRWK	8	Unmodified	_DILSRRWK_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-SECPEP	A375_MHC_IP_R2	2	536.7111206054688	2	537.314358	1072.61416	-0.8373	-0.00044989	1.891	0.0010161	1.0537	0.00056619	537.3154105256216	132.04	0.50647	132.23	132	132.51	0.18953					19	9	3	0	0	0	0.972	1	51943	51943		0	0	1	8340300			5971	5456	4039	4085	5825	5825					0.08075960182645758
DILTLRLDV	9	Unmodified	_DILTLRLDV_					0	0	0		ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	MULTI-MSMS	A375_MHC_IP_R1	1	529.6499633789062	2	529.316232	1056.61791	-0.45585	-0.00024129	-0.10002	-5.2945E-05	-0.55588	-0.00029423	529.3160767305375	92.017	0.60626	92.017	91.706	92.312	0					20	11	2	0	0	0	0.14922	1	33763	33763		41.84	5.3334	1	2876000			5972	7591	4040	4086	5826	5826					0.0918658516582127
DILVDVQRF	9	Unmodified	_DILVDVQRF_					0	0	0			REV__ENSG00000100347|ENST00000350028|SAMM50	REV__ENSG00000100347|ENST00000350028|SAMM50	MULTI-MSMS	A375_MHC_IP_R1	1	553.6980590820312	2	552.806031	1103.59751	-0.55346	-0.00030596	0.44757	0.00024742	-0.10589	-5.8538E-05	552.8062240780041	73.771	1.1656	73.771	72.93	74.095	0					41	22	4	0	0	0	0.63811	1	26825	26825		12.532	0.89125	1	1876900	+		5973	17079	4041	4087	5827	5827					0.04985414506040797
DILYLWLF	8	Unmodified	_DILYLWLF_					0	0	0			REV__ENST00000341772.4_1_2:230222395-230222521:-|nuORF	REV__ENST00000341772.4_1_2:230222395-230222521:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	360.9571228027344	3	361.535549	1081.58482	-0.10203	-3.6889E-05	-0.7463	-0.00026981	-0.84833	-0.0003067	361.8695874916152	42.894	0.25285	43.666	43.573	43.826	0.7724					7	4	2	0	0	0	0.972	1	15957	15957		11.64	6.2376	1	763050	+		5974	23736	4042	4088	5828	5828					0.04729003113811814
DIMCMECL	8	Unmodified	_DIMCMECL_					0	0	0		nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;nc|ENSG00000145868|Q6PIJ6-3|FBXO38;ENST00000509411.5_1_5:147774339-147778706:+|nuORF;ENST00000508326.5_1_5:147774339-147782111:+|nuORF	nc|ENSG00000145868|Q6PIJ6-2|FBXO38	nc|ENSG00000145868|Q6PIJ6-2|FBXO38	MULTI-SECPEP	A375_MHC_IP_R1	1	479.5810241699219	2	479.18106	956.347567	-0.5322	-0.00025502	0.49379	0.00023661	-0.038408	-1.8405E-05	479.18119898587304	25.564	0.45877	25.564	25.357	25.816	0					14	8	2	0	0	0	0.972	1	7508	7508		2.5775	2.5775	1	3853000			5975	5588	4043	4089	5829	5829					-0.13235293749380617
DIMTALEIICE	11	Unmodified	_DIMTALEIICE_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	MULTI-MSMS	A375_MHC_IP_R1	1	417.9385070800781	3	417.538414	1249.59341	0.1716	7.1651E-05	0.23073	9.6339E-05	0.40233	0.00016799	417.5384183101004	19.903	0.40525	19.903	19.674	20.079	0					21	7	4	0	0	0	0.73195	1	5034	5034		7.0371	0.80273	1	7672500			5976	9513	4044	4090	5830	5830					-0.021401790941581567
DINCEHEK	8	Unmodified	_DINCEHEK_					0	0	0			REV__RB1|p.L743*|1|0.55|ENSG00000139687|chr13:48465013-48465043|TTGATCAAAGAAGAGGAGTATGATTCTATTA/-|frameshift_variant	REV__RB1|p.L743*|1|0.55|ENSG00000139687|chr13:48465013-48465043|TTGATCAAAGAAGAGGAGTATGATTCTATTA/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	494.1794738769531	2	494.213649	986.412745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.077	1	92.077	91.577	92.577	0								0	0	0	0.16876	1	33835	33835		23.148	1.4018	1		+		5977	19172	4045	4091	5831	5831					-0.08100516636022803
DINFEQPY	8	Unmodified	_DINFEQPY_					0	0	0		ENSG00000155085|ENST00000424296|AK9;nc|ENSG00000155085|Q5TCS8-3|AK9;nc|ENSG00000155085|Q5TCS8-6|AK9;nc|ENSG00000155085|Q5TCS8-1|AK9;ENST00000466992.1_1_6:109871214-109940313:-|nuORF	ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	MULTI-SECPEP	A375_MHC_IP_R2	2	513.6319580078125	2	513.232364	1024.45018	-1.0069	-0.00051678	-0.32475	-0.00016667	-1.3317	-0.00068346	513.2323092170353	54.337	0.50522	55.088	54.814	55.32	0.75075					21	9	3	0	0	0	0.94479	1	20530	20530		13.508	0	1	2519000			5978	6123	4046	4092	5832	5832					-0.06107102098746964
DINHYGDD	8	Unmodified	_DINHYGDD_					0	0	0			REV__tr|U7SZE5|U7SZE5_FUSNU4-diphosphocytidyl-2-C-methyl-D-erythritolkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispEPE=3SV=1	REV__tr|U7SZE5|U7SZE5_FUSNU4-diphosphocytidyl-2-C-methyl-D-erythritolkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispEPE=3SV=1	MSMS	A375_MHC_IP_R2	2	474.70587158203125	2	474.688321	947.362089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.461	1	82.204	81.704	82.704	0.74293								0	0	0	0.16876	1	30937	30937		5.2307	0.47466	1		+		5979	28642	4047	4093	5833	5833					-0.11369722689380524
DINKIIIRQ	9	Unmodified	_DINKIIIRQ_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R1	1	371.9646911621094	3	371.564391	1111.67134	0.42414	0.0001576	0.053669	1.9942E-05	0.47781	0.00017754	371.56438078219463	68.751	0.91283	68.751	68.514	69.427	0					43	17	4	0	0	0	0.71358	1	24935	24935		5.7834	1.3773	1	11514000			5980	7864	4048	4094	5834	5834					0.11997382668369028
DINKIIIRQ	9	Unmodified	_DINKIIIRQ_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R2	2	371.9645690917969	3	371.564391	1111.67134	0.50009	0.00018582	-0.33845	-0.00012575	0.16165	6.0062E-05	371.56424874033524	67.8	1.0675	68.535	68.255	69.323	0.73511					47	20	4	0	0	0	0.1915	1	25661	25661		38.615	6.5773	1	18951000			5981	7864	4048	4094	5835	5835					0.11997382668369028
DINKYLVEY	9	Unmodified	_DINKYLVEY_					0	0	0			REV__ENSG00000139304|ENST00000644991|PTPRQ	REV__ENSG00000139304|ENST00000644991|PTPRQ	MULTI-SECPEP	A375_MHC_IP_R1	1	578.1768798828125	2	578.797872	1155.58119	-0.46804	-0.0002709	1.5703	0.00090888	1.1022	0.00063798	579.3004618020976	66.913	0.8184	66.913	66.58	67.399	0					17	15	2	0	0	0	0.71341	1	24276	24276		8.7454	0	1	972630	+		5982	19148	4049	4095	5836	5836					0.009622885492944988
DINLDSIIV	9	Unmodified	_DINLDSIIV_					0	0	0		CYB5R4|p.I240*|1|0.23|ENSG00000065615|chr6:83924492-83924492|A/-|frameshift_variant;ENSG00000065615|ENST00000369681|CYB5R4	CYB5R4|p.I240*|1|0.23|ENSG00000065615|chr6:83924492-83924492|A/-|frameshift_variant	CYB5R4|p.I240*|1|0.23|ENSG00000065615|chr6:83924492-83924492|A/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	501.17803955078125	2	501.279315	1000.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.513	1	86.513	86.013	87.013	0								0	0	0	0.15069	1	31724	31724		20.454	0	1				5983	691	4050	4096	5837	5837					0.043826170035458745
DINLRLPM	8	Unmodified	_DINLRLPM_					0	0	0			REV__ENSG00000066739|ENST00000359933|ATG2B	REV__ENSG00000066739|ENST00000359933|ATG2B	MSMS	A375_MHC_IP_R1	1	486.18170166015625	2	486.27077	970.526987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.784	1	89.784	89.284	90.284	0								0	0	0	0.16876	1	32989	32989		28.487	7.6156	1		+		5984	16523	4051	4097	5838	5838					0.0405441791673411
DINNQICTVK	10	Unmodified	_DINNQICTVK_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	MULTI-SECPEP	A375_MHC_IP_R1	1	574.1622924804688	2	574.29243	1146.57031	0.019597	1.1255E-05	-0.83786	-0.00048118	-0.81827	-0.00046992	574.2922705776538	21.377	0.35667	21.377	21.148	21.505	0					9	6	2	0	0	0	0.92957	1	5660	5660		10.074	0	1	1081900			5985	3531	4052	4098	5839	5839					0.0028856290334715595
DINNQTIY	8	Unmodified	_DINNQTIY_					0	0	0			REV__ENST00000513152.1_1_5:40764586-40764871:-|nuORF	REV__ENST00000513152.1_1_5:40764586-40764871:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	491.1376037597656	2	490.737814	979.461075	0.046549	2.2843E-05	-0.32094	-0.0001575	-0.27439	-0.00013466	490.73757211767054	44.501	0.66408	44.501	44.113	44.777	0					22	12	3	0	0	0	0.66714	1	15554	15554		42.095	2.1372	1	4207400	+		5986	25636	4053	4099	5840	5840					-0.029476997244614722
DINQDGYPDIA	11	Unmodified	_DINQDGYPDIA_					0	0	0		nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6	nc|ENSG00000091409|P23229-4|ITGA6	nc|ENSG00000091409|P23229-4|ITGA6	MSMS	A375_MHC_IP_R2	2	610.808837890625	2	610.775125	1219.5357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.847	1	81.591	81.091	82.091	0.74474								0	0	0	0.16191	1	30698	30698		8.7454	0	1				5987	14499	4054	4100	5841	5841					-0.0652898170374101
DINSCRYL	8	Unmodified	_DINSCRYL_					0	0	0			REV__nc|ENSG00000101868|P09884|POLA1	REV__nc|ENSG00000101868|P09884|POLA1	MSMS	A375_MHC_IP_R2	2	492.1985778808594	2	492.234384	982.454216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.287	1	78.03	77.53	78.53	0.74293								0	0	0	0.16876	1	29349	29349		19.439	4.8573	1		+		5988	27151	4055	4101	5842	5842					-0.037713358767064165
DINTIDWIFYL	11	Unmodified	_DINTIDWIFYL_					0	0	0		GAB1|p.R92W|1|0.48|ENSG00000109458|chr4:143415678-143415678|C/T|missense_variant	GAB1|p.R92W|1|0.48|ENSG00000109458|chr4:143415678-143415678|C/T|missense_variant	GAB1|p.R92W|1|0.48|ENSG00000109458|chr4:143415678-143415678|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	706.7977905273438	2	706.85846	1411.70237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.98	1	133.15	132.65	133.65	0.16487								0	0	0	0.16297	1	52318	52318		3.2813	0.28607	1				5989	14030	4056	4102	5843	5843					0.012984911919602382
DINWRFTGDFT	11	Unmodified	_DINWRFTGDFT_					0	0	0		nc|ENSG00000187258|Q6W5P4-7|NPSR1;nc|ENSG00000187258|Q6W5P4-8|NPSR1;nc|ENSG00000187258|Q6W5P4-5|NPSR1;ENSG00000187258|ENST00000360581|NPSR1;nc|ENSG00000187258|Q6W5P4-4|NPSR1;nc|ENSG00000187258|Q6W5P4-3|NPSR1	nc|ENSG00000187258|Q6W5P4-7|NPSR1	nc|ENSG00000187258|Q6W5P4-7|NPSR1	MULTI-MSMS	A375_MHC_IP_R2	2	457.6527099609375	3	457.882448	1370.62551	-0.59732	-0.0002735	-0.16169	-7.4035E-05	-0.75901	-0.00034754	457.8823114776875	24.34	0.81467	24.983	24.347	25.161	0.64368					36	15	3	0	0	0	0.73195	1	7902	7902		7.0371	0	1	22466000			5990	8818	4057	4103	5844	5844					-0.04497307304541209
DINWRFTGDFT	11	Unmodified	_DINWRFTGDFT_					0	0	0		nc|ENSG00000187258|Q6W5P4-7|NPSR1;nc|ENSG00000187258|Q6W5P4-8|NPSR1;nc|ENSG00000187258|Q6W5P4-5|NPSR1;ENSG00000187258|ENST00000360581|NPSR1;nc|ENSG00000187258|Q6W5P4-4|NPSR1;nc|ENSG00000187258|Q6W5P4-3|NPSR1	nc|ENSG00000187258|Q6W5P4-7|NPSR1	nc|ENSG00000187258|Q6W5P4-7|NPSR1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	457.882448	1370.62551	-0.59732	-0.0002735	-0.16169	-7.4035E-05	-0.75901	-0.00034754	457.8823114776875	24.34	0.81467	24.983	24.347	25.161	0.64368	0.12935	-0.00015344	NaN	7.0371	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22466000			5991	8818	4057	4103							-0.04497307304541209
DINYNETL	8	Unmodified	_DINYNETL_					0	0	0		KIF1A|p.D339N|1|0.41|ENSG00000130294|chr2:240774205-240774205|C/T|missense_variant	KIF1A|p.D339N|1|0.41|ENSG00000130294|chr2:240774205-240774205|C/T|missense_variant	KIF1A|p.D339N|1|0.41|ENSG00000130294|chr2:240774205-240774205|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	491.17388916015625	2	491.229822	980.445091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.944	1	83.944	83.444	84.444	0								0	0	0	0.16876	1	30731	30731		14.582	1.0738	1				5992	14214	4058	4104	5845	5845					-0.045914059613664904
DIPDRTFHS	9	Unmodified	_DIPDRTFHS_					0	0	0		ENSG00000143669|ENST00000389793|LYST;ENST00000473037.5_1_1:235826242-235897989:-|nuORF	ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	MULTI-MSMS	A375_MHC_IP_R1	1	544.6622314453125	2	544.261988	1086.50942	-0.56345	-0.00030666	1.5719	0.00085554	1.0085	0.00054887	544.2626808692797	61.611	0.61366	61.611	61.432	62.046	0					16	11	2	0	0	0	0.46465	1	22250	22250		21.537	1.0834	1	2886500			5993	5423	4059	4105	5846	5846					-0.03037206084582067
DIPDRTFHS	9	Unmodified	_DIPDRTFHS_					0	0	0		ENSG00000143669|ENST00000389793|LYST;ENST00000473037.5_1_1:235826242-235897989:-|nuORF	ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	544.261988	1086.50942	-0.56345	-0.00030666	1.5719	0.00085554	1.0085	0.00054887	544.2626808692797	61.611	0.61366	61.611	61.432	62.046	0	0.0096088	-8.016E-05	NaN	21.537	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2886500			5994	5423	4059	4105							-0.03037206084582067
DIPINKDLTYY	11	Unmodified	_DIPINKDLTYY_					0	0	0			REV__DCC|p.F983Y|1|0.6|ENSG00000187323|chr18:53410464-53410464|T/A|missense_variant	REV__DCC|p.F983Y|1|0.6|ENSG00000187323|chr18:53410464-53410464|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	678.3857421875	2	677.848093	1353.68163	-0.74304	-0.00050367	0.51678	0.0003503	-0.22626	-0.00015337	677.848307507903	65.441	0.51108	65.441	65.105	65.616	0					14	9	2	0	0	0	0.73332	1	23599	23599		5.7319	0.43497	1	1527100	+		5995	15969	4060	4106	5847	5847					0.018939008122970336
DIPINKDLTYY	11	Unmodified	_DIPINKDLTYY_					0	0	0			REV__DCC|p.F983Y|1|0.6|ENSG00000187323|chr18:53410464-53410464|T/A|missense_variant	REV__DCC|p.F983Y|1|0.6|ENSG00000187323|chr18:53410464-53410464|T/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	677.848093	1353.68163	-0.64676	-0.0004384	0.019047	1.2911E-05	-0.62771	-0.00042549	677.8482980840242	64.804	0.5091	65.542	65.155	65.664	0.73812	0.050698	-0.00023549	NaN	5.7319	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2023000	+		5996	15969	4060	4106							0.018939008122970336
DIPKGRKKDC	10	Unmodified	_DIPKGRKKDC_					0	0	0		WFDC3|p.R74K|1|0.29|ENSG00000124116|chr20:45787973-45787973|C/T|missense_variant	WFDC3|p.R74K|1|0.29|ENSG00000124116|chr20:45787973-45787973|C/T|missense_variant	WFDC3|p.R74K|1|0.29|ENSG00000124116|chr20:45787973-45787973|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	387.9484558105469	3	387.213252	1158.61793	-0.50423	-0.00019525	2.341	0.00090648	1.8368	0.00071124	387.5485991344709	59.78	0.45423	60.527	60.349	60.804	0.74714					13	8	2	0	0	0	0.93961	1	22626	22626		3.3196	0	1	2548900			5997	30165	4061	4107	5848	5848					0.04496261894223608
DIPKSSGVCD	10	Unmodified	_DIPKSSGVCD_					0	0	0		ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2;CASP8AP2|p.E691Ifs*13|1|0.25|ENSG00000118412|chr6:89863779-89863780|AG/-|frameshift_variant;CASP8AP2|p.K1315Lfs*4|1|0.44|ENSG00000118412|chr6:89867231-89867249|TTAAAAGTTTGTTGCAAGG/-|frameshift_variant	ENSG00000118412|ENST00000551025|CASP8AP2	ENSG00000118412|ENST00000551025|CASP8AP2	MSMS	A375_MHC_IP_R2	2	510.6918029785156	2	510.736957	1019.45936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.646	1	45.415	44.915	45.915	0.7691								0	0	0	0.15265	1	16670	16670		12.241	0.60036	1				5998	3541	4062	4108	5849	5849					-0.04959076804732376
DIPLARDPKF	10	Unmodified	_DIPLARDPKF_					0	0	0			REV__nc|ENSG00000147256|Q6ZRI8-5|ARHGAP36	REV__nc|ENSG00000147256|Q6ZRI8-5|ARHGAP36	MULTI-MSMS	A375_MHC_IP_R2	2	391.620361328125	3	391.220513	1170.63971	-0.21485	-8.4054E-05	0.1176	4.6009E-05	-0.097246	-3.8045E-05	391.22051372635326	39.701	0.35635	40.475	40.269	40.626	0.77451					16	6	3	0	0	0	0.56082	1	14690	14690		23.801	5.0798	1	5879300	+		5999	19583	4063	4109	5850	5850					0.061213899144149764
DIPMVLFFPLW	11	Unmodified	_DIPMVLFFPLW_					0	0	0			REV__nc|ENSG00000120907|P35348-6|ADRA1A	REV__nc|ENSG00000120907|P35348-6|ADRA1A	MSMS	A375_MHC_IP_R1	1	689.3673095703125	2	689.36741	1376.72027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.4	1	100.4	99.9	100.9	0								0	0	0	0.16297	1	36901	36901		3.2813	0.28607	1		+		6000	27198	4064	4110	5851	5851					0.04697534913111667
DIPNIVINS	9	Unmodified	_DIPNIVINS_					0	0	0		tr|U7SXN7|U7SXN7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00907PE=4SV=1	tr|U7SXN7|U7SXN7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00907PE=4SV=1	tr|U7SXN7|U7SXN7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00907PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	492.6917724609375	2	492.771657	983.528761	-0.12345	-6.0835E-05	-1.2292	-0.00060573	-1.3527	-0.00066657	492.7714974975397	92.998	0.35552	92.998	92.769	93.125	0					9	6	2	0	0	0	0.5212	1	34201	34201		26.268	6.9062	1	771540			6001	29829	4065	4111	5852	5852					0.03633750206336117
DIPQYKYF	8	Unmodified	_DIPQYKYF_					0	0	0			REV__nc|ENSG00000131620|Q5XXA6-3|ANO1	REV__nc|ENSG00000131620|Q5XXA6-3|ANO1	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1390380859375	2	537.26875	1072.52295	-0.75038	-0.00040316	-1.2271	-0.0006593	-1.9775	-0.0010625	537.7693771533394	47.908	0.40668	48.67	48.326	48.733	0.76128					9	7	2	0	0	0	0.94479	1	17853	17853		8.5933	0	1	1293900	+		6002	18613	4066	4112	5853	5853					-0.010413483053525852
DIPSSTASLCS	11	Unmodified	_DIPSSTASLCS_					0	0	0		ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	MULTI-MSMS	A375_MHC_IP_R2	2	541.6612548828125	2	540.747521	1079.48049	-1.2005	-0.00064918	-1.2825	-0.00069353	-2.4831	-0.0013427	540.7464383196002	38.349	0.6623	39.124	38.739	39.401	0.77451					22	12	3	0	0	0	0.67989	1	14062	14062		17.113	0.1706	1	3451400			6003	4548	4067	4113	5854	5854					-0.05607111495896788
DIPVHFDF	8	Unmodified	_DIPVHFDF_					0	0	0		ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000197217|ENST00000358689|ENTPD4	ENST00000523958.5_1_8:23291828-23307413:-|nuORF	ENST00000523958.5_1_8:23291828-23307413:-|nuORF	MSMS	A375_MHC_IP_R1	1	495.176025390625	2	495.239993	988.465432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.099	1	73.099	72.599	73.599	0								0	0	0	0.16876	1	26607	26607		24.674	4.2203	1				6004	9132	4068	4114	5855	5855					-0.029261905109024156
DIQHFVEKV	9	Unmodified	_DIQHFVEKV_					0	0	0		ENSG00000130382|ENST00000252674|MLLT1	ENSG00000130382|ENST00000252674|MLLT1	ENSG00000130382|ENST00000252674|MLLT1	MULTI-SECPEP	A375_MHC_IP_R1	1	372.60150146484375	3	372.201229	1113.58186	0.13482	5.0181E-05	0.27259	0.00010146	0.40741	0.00015164	372.2014015361364	66.364	1.1216	66.364	66.072	67.194	0					33	21	4	0	0	0	0.78353	1	24035	24035		1.7423	1.6343	1	3856700			6005	4238	4069	4115	5856	5856					0.029611279890104925
DIQKLLSGIAV	11	Unmodified	_DIQKLLSGIAV_					0	0	0		ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;ENST00000573364.1_1_17:80890567-80895237:+|nuORF;nc|ENSG00000141556|Q9BTW9-2|TBCD;ENST00000576677.5_1_17:80888388-80900336:+|nuORF;ENST00000576603.5_1_17:80889830-80900336:+|nuORF;RNF213-TBCD|1|fusion	ENSG00000141556|ENST00000355528|TBCD	ENSG00000141556|ENST00000355528|TBCD	MULTI-SECPEP	A375_MHC_IP_R2	2	385.6445007324219	3	386.236051	1155.68632	-0.2037	-7.8678E-05	1.1245	0.00043432	0.9208	0.00035564	386.23646783469235	55.562	0.35453	56.312	56.135	56.489	0.75075					10	6	2	0	0	0	0.9754	1	21023	21023		6.6235	0	1	1200700			6006	5254	4070	4116	5857	5857					0.11470829745712763
DIQKWRKHLRI	11	Unmodified	_DIQKWRKHLRI_					0	0	0		ENST00000524021.1_1_8:33310907-33318970:-|nuORF;ENST00000518672.5_1_8:33310907-33319160:-|nuORF	ENST00000524021.1_1_8:33310907-33318970:-|nuORF	ENST00000524021.1_1_8:33310907-33318970:-|nuORF	MSMS	A375_MHC_IP_R2	2	747.2564086914062	2	746.946602	1491.87865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.897	1	98.653	98.153	99.153	0.75586								0	0	0	0.16334	1	37150	37150		1.3295	1.0225	1				6007	12974	4071	4117	5858	5858					0.15238589936416247
DIQLGLSF	8	Unmodified	_DIQLGLSF_					0	0	0		KEL|p.S502L|1|0.15|ENSG00000197993|chr7:142943870-142943870|G/A|missense_variant	KEL|p.S502L|1|0.15|ENSG00000197993|chr7:142943870-142943870|G/A|missense_variant	KEL|p.S502L|1|0.15|ENSG00000197993|chr7:142943870-142943870|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	891.9402465820312	1	892.47746	891.470183	-0.15203	-0.00013568	-0.37892	-0.00033818	-0.53095	-0.00047386	892.4770014332003	102.09	0.55711	102.09	101.8	102.35	0					19	10	2	0	0	0	0.80467	1	37604	37604		34.402	9.0024	1	5997400			6008	14207	4072	4118	5859	5859					0.020106936318597946
DIQLGLSF	8	Unmodified	_DIQLGLSF_					0	0	0		KEL|p.S502L|1|0.15|ENSG00000197993|chr7:142943870-142943870|G/A|missense_variant	KEL|p.S502L|1|0.15|ENSG00000197993|chr7:142943870-142943870|G/A|missense_variant	KEL|p.S502L|1|0.15|ENSG00000197993|chr7:142943870-142943870|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		1	892.47746	891.470183	-0.36408	-0.00032494	-0.22169	-0.00019785	-0.58577	-0.00052279	892.4772176919291	101.34	0.60861	102.1	101.8	102.41	0.76428	0.0043228	3.8077E-05	NaN	34.402	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6091100			6009	14207	4072	4118							0.020106936318597946
DIQPLVTSF	9	Unmodified	_DIQPLVTSF_					0	0	0			REV__ENST00000471702.2_2_3:132339980-132400782:-|nuORF	REV__ENST00000471702.2_2_3:132339980-132400782:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	511.4674377441406	2	510.274032	1018.53351	-0.51604	-0.00026332	-0.16746	-8.5448E-05	-0.6835	-0.00034877	510.27381613773133	76.905	1.4751	76.905	76.471	77.946	0					50	28	3	0	0	0	0.64808	1	28073	28073		11.64	1.5664	1	5588600	+		6010	22778	4073	4119	5860	5860					0.024986343491036678
DIQRIHLRF	9	Unmodified	_DIQRIHLRF_					0	0	0		DOCK2|p.M502I|1|0.34|ENSG00000134516|chr5:169711958-169711958|G/A|missense_variant	DOCK2|p.M502I|1|0.34|ENSG00000134516|chr5:169711958-169711958|G/A|missense_variant	DOCK2|p.M502I|1|0.34|ENSG00000134516|chr5:169711958-169711958|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	399.9435119628906	3	399.899885	1196.67783	-0.42891	-0.00017152	-0.01471	-5.8825E-06	-0.44362	-0.0001774	399.89985168050606	38.457	0.66109	39.231	38.997	39.658	0.77451					37	12	4	0	0	0	0.60982	1	14275	14275		14.405	5.9611	1	19613000			6011	781	4074	4120	5861	5861					0.08735320619734921
DIQSTLLY	8	Unmodified	_DIQSTLLY_					0	0	0			REV__nc|ENSG00000176994|Q8TEV9-2|SMCR8	REV__nc|ENSG00000176994|Q8TEV9-2|SMCR8	MULTI-MSMS	A375_MHC_IP_R2	2	953.4193725585938	1	952.498589	951.491313	-0.094137	-8.9665E-05	-0.66738	-0.00063568	-0.76152	-0.00072535	952.497848394898	70.219	0.60905	70.954	70.642	71.251	0.73421					16	11	2	0	0	0	0.7256	1	26665	26665		26.884	1.4843	1	2199500	+		6012	21435	4075	4121	5862	5862					0.013626589407294887
DIQSTLLY	8	Unmodified	_DIQSTLLY_					0	0	0			REV__nc|ENSG00000176994|Q8TEV9-2|SMCR8	REV__nc|ENSG00000176994|Q8TEV9-2|SMCR8	MULTI-MATCH	A375_MHC_IP_R1	1		1	952.498589	951.491313	0.12973	0.00012357	-0.20695	-0.00019712	-0.077215	-7.3547E-05	952.4985399065556	70.876	0.5629	70.876	70.648	71.211	0	-0.039038	0.00029213	NaN	26.884	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2807100	+		6013	21435	4075	4121							0.013626589407294887
DIQSTLLY	8	Unmodified	_DIQSTLLY_					0	0	0			REV__nc|ENSG00000176994|Q8TEV9-2|SMCR8	REV__nc|ENSG00000176994|Q8TEV9-2|SMCR8	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	952.498589	951.491313	-0.094137	-8.9665E-05	-0.66738	-0.00063568	-0.76152	-0.00072535	952.497848394898	70.219	0.60905	70.954	70.642	71.251	0.73421	0.039038	-0.00014644	NaN	26.884	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2199500	+		6014	21435	4075	4121							0.013626589407294887
DIQYQNIRDVF	11	Unmodified	_DIQYQNIRDVF_					0	0	0			REV__tr|U7T205|U7T205_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00710PE=4SV=1	REV__tr|U7T205|U7T205_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00710PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	706.25341796875	2	705.854241	1409.69393	-0.71163	-0.00050231	0.27033	0.00019082	-0.44129	-0.00031149	705.8550274207338	131.31	0.81444	131.49	131.14	131.95	0.18954					24	15	2	0	0	0	0.99791	1	51666	51666		4.897	1.6157	1	3769700	+		6015	28713	4076	4122	5863	5863					0.005469372752941126
DIQYQNIRDVF	11	Unmodified	_DIQYQNIRDVF_					0	0	0			REV__tr|U7T205|U7T205_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00710PE=4SV=1	REV__tr|U7T205|U7T205_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00710PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	705.854241	1409.69393	-0.83064	-0.00058631	1.7206	0.0012145	0.88991	0.00062815	705.855753550068	131.46	0.60535	131.46	131.07	131.68	0	-0.01655	0.0011809	NaN	4.897	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5244600	+		6016	28713	4076	4122							0.005469372752941126
DIRCHSCYKV	10	Unmodified	_DIRCHSCYKV_					0	0	0		ENSG00000204421|ENST00000375819|LY6G6C	ENSG00000204421|ENST00000375819|LY6G6C	ENSG00000204421|ENST00000375819|LY6G6C	MULTI-SECPEP	A375_MHC_IP_R2	2	409.14471435546875	3	408.526842	1222.5587	0.023785	9.7169E-06	-0.070719	-2.8891E-05	-0.046934	-1.9174E-05	408.5259936797543	41.861	0.25595	42.636	42.453	42.709	0.77451					7	4	2	0	0	0	0.94363	1	15547	15547		1.4551	0.75745	1	733660			6017	9442	4077	4123	5864	5864					-0.04367957391650634
DIRDFIHQR	9	Unmodified	_DIRDFIHQR_					0	0	0		ENST00000521384.5_1_5:21751848-21889748:-|nuORF;nc|ENSG00000154162|P55289-2|CDH12;ENSG00000154162|ENST00000382254|CDH12	ENST00000521384.5_1_5:21751848-21889748:-|nuORF	ENST00000521384.5_1_5:21751848-21889748:-|nuORF	MSMS	A375_MHC_IP_R2	2	400.6120300292969	3	400.547511	1198.6207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.376	1	51.13	50.63	51.63	0.75406								0	0	0	0.15253	1	18946	18946		17.443	3.0373	1				6018	6066	4078	4124	5865	5865					0.029338533433474367
DIRDFRSSAGL	11	Unmodified	_DIRDFRSSAGL_					0	0	0		nc|ENSG00000105655|Q9NPH2-2|ISYNA1;ENST00000577820.5_1_19:18545725-18548921:-|nuORF;nc|ENSG00000105655|Q9NPH2-3|ISYNA1;ENSG00000105655|ENST00000338128|ISYNA1	nc|ENSG00000105655|Q9NPH2-2|ISYNA1	nc|ENSG00000105655|Q9NPH2-2|ISYNA1	MSMS	A375_MHC_IP_R1	1	618.6920776367188	2	618.820201	1235.62585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.744	1	76.744	76.244	77.244	0								0	0	0	0.15971	1	27980	27980		14.405	1.3629	1				6019	2623	4079	4125	5866	5866					0.017461124153442142
DIRGKLLQV	9	Unmodified	_DIRGKLLQV_					0	0	0		nc|ENSG00000165521|Q05BV3|EML5;ENSG00000165521|ENST00000554922|EML5;ENST00000553281.5_1_14:89088194-89171927:-|nuORF	nc|ENSG00000165521|Q05BV3|EML5	nc|ENSG00000165521|Q05BV3|EML5	MULTI-SECPEP	A375_MHC_IP_R1	1	521.72412109375	2	521.324391	1040.63423	-0.41862	-0.00021824	-0.23306	-0.0001215	-0.65168	-0.00033974	521.3242350279129	55.966	0.55676	55.966	55.738	56.295	0					29	10	4	0	0	0	0.43207	1	20009	20009		40.239	8.9709	1	21042000			6020	6963	4080	4126	5867	5867					0.11553711122587629
DIRGKLLQV	9	Unmodified	_DIRGKLLQV_					0	0	0		nc|ENSG00000165521|Q05BV3|EML5;ENSG00000165521|ENST00000554922|EML5;ENST00000553281.5_1_14:89088194-89171927:-|nuORF	nc|ENSG00000165521|Q05BV3|EML5	nc|ENSG00000165521|Q05BV3|EML5	MULTI-SECPEP	A375_MHC_IP_R2	2	521.7236328125	2	521.324391	1040.63423	-0.7603	-0.00039636	0.078781	4.107E-05	-0.68152	-0.00035529	521.3244106799198	55.004	0.61211	55.755	55.422	56.034	0.75075					30	11	4	0	0	0	0.59614	1	20719	20719		28.495	4.7047	1	18247000			6021	6963	4080	4126	5868	5868					0.11553711122587629
DIRGKYYLIDR	11	Unmodified	_DIRGKYYLIDR_					0	0	0			REV__nc|ENSG00000131089|O43307-3|ARHGEF9	REV__nc|ENSG00000131089|O43307-3|ARHGEF9	MSMS	A375_MHC_IP_R1	1	706.4307861328125	2	706.388251	1410.76195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.78	1	103.78	103.28	104.28	0								0	0	0	0.16265	1	38109	38109		4.897	0.36815	1		+		6022	18588	4081	4127	5869	5869					0.07299806925971097
DIRKKKRRRK	10	Unmodified	_DIRKKKRRRK_					0	0	0			REV__ENSG00000116254|ENST00000262450|CHD5	REV__ENSG00000116254|ENST00000262450|CHD5	MSMS	A375_MHC_IP_R2	2	692.2532348632812	2	692.46021	1382.90587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.73	1	94.475	93.975	94.975	0.74474								0	0	0	0.15629	1	35629	35629		0.40072	0.050084	1		+		6023	17951	4082	4128	5870	5870					0.22973118267418613
DIRKNQSDK	9	Unmodified	_DIRKNQSDK_					0	0	0			REV__ENSG00000163872|ENST00000305135|YEATS2	REV__ENSG00000163872|ENST00000305135|YEATS2	MULTI-SECPEP	A375_MHC_IP_R1	1	1103.8414306640625	1	1103.58036	1102.57309	-0.26542	-0.00029292	-0.33249	-0.00036693	-0.59792	-0.00065985	1103.5795976934828	140.26	0.25497	140.26	140.13	140.39	0					8	4	3	0	0	0	0.81363	1	53840	53840		1.8442	0	1	6276000	+		6024	20421	4083	4129	5871	5871					0.025901543525151283
DIRLIPKDQY	10	Unmodified	_DIRLIPKDQY_					0	0	0		ENSG00000070501|ENST00000265421|POLB	ENSG00000070501|ENST00000265421|POLB	ENSG00000070501|ENST00000265421|POLB	MULTI-MSMS	A375_MHC_IP_R1	1	421.30303955078125	3	420.903072	1259.68739	-0.086757	-3.6516E-05	-0.10013	-4.2145E-05	-0.18689	-7.8661E-05	420.903118108551	41.022	0.40218	41.022	40.813	41.215	0					13	7	2	0	0	0	0.5761	1	14154	14154		15.538	6.2947	1	3957900			6025	1494	4084	4130	5872	5872					0.06793044114624536
DIRLIPKDQY	10	Unmodified	_DIRLIPKDQY_					0	0	0		ENSG00000070501|ENST00000265421|POLB	ENSG00000070501|ENST00000265421|POLB	ENSG00000070501|ENST00000265421|POLB	MULTI-MSMS	A375_MHC_IP_R2	2	421.3032531738281	3	420.903072	1259.68739	-0.16019	-6.7423E-05	-0.47701	-0.00020078	-0.6372	-0.0002682	420.90298162620167	40.237	0.45647	41.012	40.777	41.234	0.77451					21	8	4	0	0	0	0.43567	1	14894	14894		23.016	8.1777	1	5569600			6026	1494	4084	4130	5873	5873					0.06793044114624536
DIRQLGLFKNY	11	Unmodified	_DIRQLGLFKNY_					0	0	0		tr|U7SJ05|U7SJ05_FUSNUPolymer-formingcytoskeletalproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02298PE=4SV=1;tr|U7SFZ5|U7SFZ5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02295PE=4SV=1	tr|U7SJ05|U7SJ05_FUSNUPolymer-formingcytoskeletalproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02298PE=4SV=1	tr|U7SJ05|U7SJ05_FUSNUPolymer-formingcytoskeletalproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02298PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	683.7343139648438	2	683.877519	1365.74048	-1.0134	-0.00069306	0.56032	0.00038319	-0.4531	-0.00030987	684.3803169144762	124.36	0.25248	124.36	124.19	124.44	0					5	4	2	0	0	0	0.9889	1	46681	46681		4.897	0	1	14652000			6027	29400	4085	4131	5874	5874					0.07224421897308275
DIRSQLRY	8	Unmodified	_DIRSQLRY_					0	0	0		RIC8B|p.P316*|1|0.32|ENSG00000111785|chr12:106842697-106842701|GCCCA/-|frameshift_variant;nc|ENSG00000111785|Q9NVN3-3|RIC8B;nc|ENSG00000111785|Q9NVN3|RIC8B;nc|ENSG00000111785|Q9NVN3-1|RIC8B;ENSG00000111785|ENST00000392837|RIC8B	RIC8B|p.P316*|1|0.32|ENSG00000111785|chr12:106842697-106842701|GCCCA/-|frameshift_variant	RIC8B|p.P316*|1|0.32|ENSG00000111785|chr12:106842697-106842701|GCCCA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1875	2	525.788173	1049.56179	-0.52671	-0.00027694	0.15267	8.0273E-05	-0.37404	-0.00019667	525.7875747463652	45.309	0.70678	46.074	45.746	46.453	0.76519					23	13	2	0	0	0	0.972	1	16986	16986		7.9102	7.9102	1	2998300			6028	3027	4086	4132	5875	5875					0.03899377049060604
DIRTECFVPD	10	Unmodified	_DIRTECFVPD_					0	0	0		ENSG00000197616|ENST00000405093|MYH6;ENST00000557461.1_1_14:23869380-23876432:-|nuORF	ENSG00000197616|ENST00000405093|MYH6	ENSG00000197616|ENST00000405093|MYH6	MULTI-SECPEP	A375_MHC_IP_R2	2	598.2109375	2	597.776613	1193.53867	-0.55191	-0.00032992	-0.77176	-0.00046134	-1.3237	-0.00079126	597.776453891109	102.6	0.61032	103.37	102.87	103.48	0.76428					14	11	2	0	0	0	0.88918	1	38760	38760		13.042	2.9685	1	462570			6029	9180	4087	4133	5876	5876					-0.050354298505908446
DIRTIFSY	8	Unmodified	_DIRTIFSY_					0	0	0		ENST00000504807.5_1_5:176939673-176941736:-|nuORF;ENST00000507900.5_1_5:176938794-176942272:-|nuORF;ENST00000503078.5_1_5:176938794-176943460:-|nuORF;ENSG00000183258|ENST00000330503|DDX41;ENST00000512027.1_1_5:176940338-176940763:-|nuORF;ENST00000505081.5_1_5:176940412-176942272:-|nuORF	ENST00000504807.5_1_5:176939673-176941736:-|nuORF	ENST00000504807.5_1_5:176939673-176941736:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	508.1658630371094	2	507.766374	1013.5182	-1.1367	-0.00057719	0.19159	9.7284E-05	-0.94512	-0.0004799	507.7665456671663	57.158	0.71229	57.909	57.612	58.324	0.75014					29	13	3	0	0	0	0.8824	1	21568	21568		23.148	0	1	7333000			6030	8479	4088	4134	5877	5877					0.01197767551900597
DIRTYQRIV	9	Unmodified	_DIRTYQRIV_					0	0	0			REV__ENSG00000170677|ENST00000397942|SOCS6	REV__ENSG00000170677|ENST00000397942|SOCS6	MULTI-SECPEP	A375_MHC_IP_R2	2	387.92919921875	3	388.555895	1162.64586	-0.24555	-9.541E-05	2.3291	0.00090497	2.0835	0.00080956	388.89081090644453	65.296	0.30381	66.034	65.817	66.121	0.73812					11	5	3	0	0	0	0.77396	1	24768	24768		1.9064	0.9441	1	743660	+		6031	21012	4089	4135	5878	5878					0.07103908145927562
DIRVCNSKCVL	11	Unmodified	_DIRVCNSKCVL_					0	0	0		ENST00000411987.5_1_3:12618132-12618201:+|nuORF	ENST00000411987.5_1_3:12618132-12618201:+|nuORF	ENST00000411987.5_1_3:12618132-12618201:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	417.5877380371094	3	417.217897	1248.63186	-0.11798	-4.9224E-05	2.3272	0.00097095	2.2092	0.00092173	417.2187277292774	26.503	0.60963	26.503	26.118	26.728	0					27	11	4	0	0	0	0.73388	1	7895	7895		5.1984	0.79229	1	2096200			6032	11647	4090	4136	5879	5879					0.01749171330993704
DIRYFRDAS	9	Unmodified	_DIRYFRDAS_					0	0	0			REV__ENSG00000157680|ENST00000614521|DGKI	REV__ENSG00000157680|ENST00000614521|DGKI	MULTI-SECPEP	A375_MHC_IP_R1	1	381.5966491699219	3	381.524484	1141.55162	0.54781	0.000209	-0.70688	-0.00026969	-0.15908	-6.0692E-05	381.52400955352005	37.366	0.30687	37.366	37.198	37.505	0					10	5	3	0	0	0	0.55534	1	12618	12618		20.581	3.1383	1	951110	+		6033	20039	4091	4137	5880	5880					-0.013492306761918371
DISAFIERTM	10	Unmodified	_DISAFIERTM_					0	0	0			REV__ENSG00000112659|ENST00000252050|CUL9	REV__ENSG00000112659|ENST00000252050|CUL9	MULTI-MSMS	A375_MHC_IP_R1	1	592.1947021484375	2	591.794806	1181.57506	-0.4642	-0.00027471	2.7019	0.001599	2.2377	0.0013242	592.2988532470591	80.434	1.4252	80.434	79.828	81.253	0					44	27	2	0	0	0	0.69306	1	29364	29364		13.906	0.86358	1	3068900	+		6034	17745	4092	4138	5881	5881					-0.008465529539080308
DISASTNIY	9	Unmodified	_DISASTNIY_					0	0	0			REV__tr|U7T1Z7|U7T1Z7_FUSNUDUF3290domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00700PE=4SV=1	REV__tr|U7T1Z7|U7T1Z7_FUSNUDUF3290domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00700PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	492.1634216308594	2	492.237647	982.460741	-0.46445	-0.00022862	-0.36549	-0.00017991	-0.82994	-0.00040853	492.2374009934266	63.361	0.81398	64.101	63.682	64.496	0.74022					35	15	3	0	0	0	0.17328	1	23988	23988		39.957	7.1716	1	7527500	+		6035	28710	4093	4139	5882	5882					-0.031191194443408676
DISASTNIY	9	Unmodified	_DISASTNIY_					0	0	0			REV__tr|U7T1Z7|U7T1Z7_FUSNUDUF3290domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00700PE=4SV=1	REV__tr|U7T1Z7|U7T1Z7_FUSNUDUF3290domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00700PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	491.6716613769531	2	492.237647	982.460741	-0.46445	-0.00022862	-0.36549	-0.00017991	-0.82994	-0.00040853	492.2374009934266	63.361	0.81398	64.101	63.682	64.496	0.74022					35	15	3	0	0	0	0.24548	1	24046	24046		52.268	19.963	1	7527500	+		6036	28710	4093	4139	5883	5883					-0.031191194443408676
DISCEGEEND	10	Unmodified	_DISCEGEEND_					0	0	0			REV__ALDH1L1|p.D399N|1|0.23|ENSG00000144908|chr3:126137842-126137842|C/T|missense_variant	REV__ALDH1L1|p.D399N|1|0.23|ENSG00000144908|chr3:126137842-126137842|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	555.684326171875	2	555.698226	1109.3819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.378	1	76.119	75.619	76.619	0.74052								0	0	0	0.15435	1	28613	28613		6.7232	1.9672	1		+		6037	15355	4094	4140	5884	5884					-0.16841759531575917
DISEIENYL	9	Unmodified	_DISEIENYL_					0	0	0		tr|U7T6N5|U7T6N5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00309PE=4SV=1	tr|U7T6N5|U7T6N5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00309PE=4SV=1	tr|U7T6N5|U7T6N5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00309PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	547.7109985351562	2	548.263862	1094.51317	-0.6981	-0.00038274	1.3064	0.00071625	0.6083	0.00033351	548.262594541061	93.122	0.25371	93.861	93.696	93.95	0.73902					6	4	2	0	0	0	0.67539	1	35430	35430		30.225	3.3412	1	742810			6038	30052	4095	4141	5885	5885					-0.030305811013704442
DISERLQLREQ	11	Unmodified	_DISERLQLREQ_					0	0	0		ENST00000603680.5_1_12:51748165-51753149:-|nuORF;ENSG00000139629|ENST00000356317|GALNT6	ENST00000603680.5_1_12:51748165-51753149:-|nuORF	ENST00000603680.5_1_12:51748165-51753149:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	694.2705688476562	2	693.870422	1385.72629	-0.63109	-0.0004379	1.3181	0.00091459	0.68701	0.00047669	693.871317226228	73.491	0.35591	74.226	73.99	74.345	0.73541					12	6	3	0	0	0	0.7039	1	27899	27899		15.248	0	1	2516200			6039	5094	4096	4142	5886	5886					0.048857246783200026
DISERLQLREQ	11	Unmodified	_DISERLQLREQ_					0	0	0		ENST00000603680.5_1_12:51748165-51753149:-|nuORF;ENSG00000139629|ENST00000356317|GALNT6	ENST00000603680.5_1_12:51748165-51753149:-|nuORF	ENST00000603680.5_1_12:51748165-51753149:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	693.870422	1385.72629	-0.63109	-0.0004379	1.3181	0.00091459	0.68701	0.00047669	693.871317226228	73.491	0.35591	74.226	73.99	74.345	0.73541	0.067248	0.00027738	NaN	15.248	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2516200			6040	5094	4096	4142							0.048857246783200026
DISHLVRKKRK	11	Unmodified	_DISHLVRKKRK_					0	0	0		nc|ENSG00000132780|P49321-2|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;nc|ENSG00000132780|P49321-4|NASP	nc|ENSG00000132780|P49321-2|NASP	nc|ENSG00000132780|P49321-2|NASP	MSMS	A375_MHC_IP_R1	1	690.76123046875	2	690.433327	1378.8521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.73	1	89.73	89.23	90.23	0								0	0	0	0.16334	1	32967	32967		1.3295	0.13619	1				6041	4447	4097	4143	5887	5887					0.17782901045052313
DISLGHPLY	9	Unmodified	_DISLGHPLY_					0	0	0			REV__PAM|p.D589N|1|0.1|ENSG00000145730|chr5:103005188-103005188|G/A|missense_variant	REV__PAM|p.D589N|1|0.1|ENSG00000145730|chr5:103005188-103005188|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	507.11895751953125	2	507.766374	1013.5182	-0.42365	-0.00021512	-0.25602	-0.00013	-0.67968	-0.00034512	507.7663606042414	57.967	0.65948	57.967	57.618	58.278	0					30	12	3	0	0	0	0.43707	1	20797	20797		28.487	1.6032	1	8157400	+		6042	27711	4098	4144	5888	5888					0.011977675518892283
DISPRSPGSF	10	Unmodified	_DISPRSPGSF_					0	0	0		ENST00000541704.2_1_12:109549217-109563236:+|nuORF	ENST00000541704.2_1_12:109549217-109563236:+|nuORF	ENST00000541704.2_1_12:109549217-109563236:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	531.18505859375	2	531.764363	1061.51417	-0.34617	-0.00018408	0.54081	0.00028758	0.19464	0.0001035	531.7645447127693	39.111	0.45804	39.111	38.882	39.34	0					10	8	2	0	0	0	0.77204	1	13424	13424		16.149	0	1	1456100			6043	13291	4099	4145	5889	5889					-0.014123219418024746
DISSRAPCPD	10	Unmodified	_DISSRAPCPD_					0	0	0			REV__nc|ENSG00000178031|Q8N6G6-4|ADAMTSL1	REV__nc|ENSG00000178031|Q8N6G6-4|ADAMTSL1	MULTI-MSMS	A375_MHC_IP_R1	1	530.63671875	2	530.740031	1059.46551	-0.58817	-0.00031217	-1.5102	-0.00080154	-2.0984	-0.0011137	531.2410869098655	57.668	0.40625	57.668	57.467	57.873	0					11	7	2	0	0	0	0.6806	1	20725	20725		14.838	1.3304	1	960200	+		6044	27379	4100	4146	5890	5890					-0.0618455857322715
DISTIDDVAD	10	Unmodified	_DISTIDDVAD_					0	0	0			REV__nc|ENSG00000044115|P35221-2|CTNNA1	REV__nc|ENSG00000044115|P35221-2|CTNNA1	MULTI-SECPEP	A375_MHC_IP_R2	2	531.6975708007812	2	532.243126	1062.4717	-0.95695	-0.00050933	2.8611	0.0015228	1.9042	0.0010135	532.24472828071	54.229	0.40476	54.98	54.814	55.219	0.75075					12	7	2	0	0	0	0.60238	1	20509	20509		26.268	3.5319	1	760830	+		6045	16353	4101	4147	5891	5891					-0.05703761860695522
DISVDKFTV	9	Unmodified	_DISVDKFTV_					0	0	0			REV__ENST00000361362.6_1_5:178322903-178343648:+|nuORF	REV__ENST00000361362.6_1_5:178322903-178343648:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	512.7783203125	2	512.27149	1022.52843	-1.326	-0.00067925	0.40023	0.00020503	-0.92572	-0.00047422	512.2716408786473	53.082	0.71495	53.833	53.638	54.353	0.75105					22	13	2	0	0	0	0.34064	1	20177	20177		27.629	2.2295	1	2200200	+		6046	23910	4102	4148	5892	5892					0.018063304864767815
DITEETLYS	9	Unmodified	_DITEETLYS_					0	0	0		ENST00000459899.1_1_14:35857513-35858113:-|nuORF;ENST00000496593.5_1_11:61404148-61405105:+|nuORF	ENST00000459899.1_1_14:35857513-35858113:-|nuORF;ENST00000496593.5_1_11:61404148-61405105:+|nuORF	ENST00000496593.5_1_11:61404148-61405105:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	535.6868896484375	2	535.748044	1069.48154	-1.0513	-0.00056323	1.3908	0.00074511	0.33948	0.00018187	535.7486900803118	67.46	0.55771	67.46	67.297	67.854	0					15	10	2	0	0	0	0.76827	1	24430	24430		1.4819	0	1	734880			6047	12158;12730	4103	4149	5893	5893					-0.05042573855325827
DITFRQYNTEM	11	Unmodified	_DITFRQYNTEM_					0	0	0			REV__ENSG00000070061|ENST00000374647|ELP1	REV__ENSG00000070061|ENST00000374647|ELP1	MSMS	A375_MHC_IP_R1	1	709.2888793945312	2	709.324459	1416.63436	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.308	1	88.308	87.808	88.808	0								0	0	0	0.16258	1	32416	32416		5.2969	0.39987	1		+		6048	16565	4104	4150	5894	5894					-0.05728701730367902
DITGVGLEFL	10	Unmodified	_DITGVGLEFL_					0	0	0			REV__ENSG00000203837|ENST00000369230|PNLIPRP3	REV__ENSG00000203837|ENST00000369230|PNLIPRP3	MULTI-SECPEP	A375_MHC_IP_R2	2	532.1763916015625	2	532.28714	1062.55973	-0.59249	-0.00031538	1.6922	0.00090075	1.0997	0.00058538	532.2879357782347	93.224	0.4592	93.963	93.746	94.205	0.73902					13	8	2	0	0	0	0.52461	1	35376	35376		43.858	3.901	1	572110	+		6049	22471	4105	4151	5895	5895					0.03094903520582193
DITISMKTN	9	Unmodified	_DITISMKTN_					0	0	0		tr|U7SP14|U7SP14_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01846PE=4SV=1	tr|U7SP14|U7SP14_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01846PE=4SV=1	tr|U7SP14|U7SP14_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01846PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	1022.4043579101562	1	1022.51867	1021.5114	0.035258	3.6051E-05	-1.4564	-0.0014892	-1.4212	-0.0014532	1022.5171716457482	130.93	0.76427	131.15	130.91	131.67	0.2142					25	14	3	0	0	0	0.61998	1	51425	51425		13.906	0	1	17014000			6050	29566	4106	4152	5896	5896					0.0015008660902822157
DITISMKTN	9	Unmodified	_DITISMKTN_					0	0	0		tr|U7SP14|U7SP14_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01846PE=4SV=1	tr|U7SP14|U7SP14_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01846PE=4SV=1	tr|U7SP14|U7SP14_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01846PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		1	1022.51867	1021.5114	-0.048631	-4.9726E-05	-1.0474	-0.001071	-1.096	-0.0011207	1022.5176686526634	131.12	0.60754	131.12	130.82	131.43	0	-0.013679	0.00032086	NaN	13.906	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15824000			6051	29566	4106	4152							0.0015008660902822157
DITMQWYQQ	9	Unmodified	_DITMQWYQQ_					0	0	0		nc|ENSG00000119392|Q53GS7-2|GLE1;ENSG00000119392|ENST00000309971|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	MULTI-SECPEP	A375_MHC_IP_R1	1	607.429443359375	2	606.771331	1211.52811	-0.33144	-0.00020111	-1.3921	-0.00084469	-1.7235	-0.0010458	607.2718700362262	99.769	0.25118	99.769	99.673	99.925	0					7	4	2	0	0	0	0.78798	1	36676	36676		3.9444	0	1	1675500			6052	3587	4107	4153	5897	5897					-0.0691941250504442
DITQAVSLSQG	11	Unmodified	_DITQAVSLSQG_					0	0	0		ENSG00000143669|ENST00000389793|LYST;ENST00000473037.5_1_1:235826242-235897989:-|nuORF	ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	MSMS	A375_MHC_IP_R1	1	559.5687866210938	2	559.788035	1117.56152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.924	1	74.924	74.424	75.424	0								0	0	0	0.14829	1	27293	27293		21.59	5.441	1				6053	5423	4108	4154	5898	5898					0.007439125385189982
DITQVTVLD	9	Unmodified	_DITQVTVLD_					0	0	0		ENSG00000134121|ENST00000256509|CHL1;nc|ENSG00000134121|O00533|CHL1	ENSG00000134121|ENST00000256509|CHL1	ENSG00000134121|ENST00000256509|CHL1	MULTI-SECPEP	A375_MHC_IP_R1	1	501.63580322265625	2	502.268947	1002.52334	-0.35201	-0.0001768	0.31935	0.0001604	-0.032653	-1.6401E-05	502.26877241061146	96.304	0.7623	96.304	95.968	96.73	0					25	14	3	0	0	0	0.31606	1	35495	35495		47.749	7.7914	1	1384700			6054	4552	4109	4155	5899	5899					0.022180266238478907
DITSEESSST	10	Unmodified	_DITSEESSST_					0	0	0			REV__SCN8A|p.G1134E|1|0.59|ENSG00000196876|chr12:51769896-51769896|G/A|missense_variant	REV__SCN8A|p.G1134E|1|0.59|ENSG00000196876|chr12:51769896-51769896|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	528.1663208007812	2	528.222391	1054.43023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.303	1	44.303	43.803	44.803	0								0	0	0	0.15332	1	15451	15451		10.074	1.4806	1		+		6055	27924	4110	4156	5900	5900					-0.09480942620029964
DITSLIRVYY	10	Unmodified	_DITSLIRVYY_					0	0	0			REV__nc|ENSG00000013275|P43686-2|PSMC4	REV__nc|ENSG00000013275|P43686-2|PSMC4	MSMS	A375_MHC_IP_R2	2	621.9771728515625	2	621.840071	1241.66559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.068	1	89.8	89.3	90.3	0.7318								0	0	0	0.15308	1	33899	33899		10.824	1.4408	1		+		6056	16227	4111	4157	5901	5901					0.05442239366061585
DITVDYILTP	10	Unmodified	_DITVDYILTP_					0	0	0		nc|ENSG00000103248|Q2M296-4|MTHFSD;nc|ENSG00000103248|Q2M296-2|MTHFSD;nc|ENSG00000103248|Q2M296-3|MTHFSD;ENSG00000103248|ENST00000360900|MTHFSD	nc|ENSG00000103248|Q2M296-4|MTHFSD	nc|ENSG00000103248|Q2M296-4|MTHFSD	MULTI-SECPEP	A375_MHC_IP_R2	2	575.172119140625	2	575.305529	1148.59651	-0.085263	-4.9052E-05	1.0861	0.00062486	1.0009	0.00057581	575.3064208736104	93.399	0.66017	94.139	93.697	94.357	0.74007					17	12	2	0	0	0	0.78945	1	35450	35450		13.906	0	1	2017500			6057	2434	4112	4158	5902	5902					0.02815155346456777
DIVDGRKMLF	10	Unmodified	_DIVDGRKMLF_					0	0	0			REV__nc|ENSG00000134313|Q9ULH0-4|KIDINS220	REV__nc|ENSG00000134313|Q9ULH0-4|KIDINS220	MULTI-SECPEP	A375_MHC_IP_R2	2	597.2128295898438	2	597.320991	1192.62743	-0.91559	-0.0005469	-3.2017	-0.0019125	-4.1173	-0.0024594	597.8217481316126	59.854	0.60672	60.601	60.299	60.906	0.74714					21	11	3	0	0	0	0.92389	1	22738	22738		7.2892	0	1	2194300	+		6058	27232	4113	4159	5903	5903					0.03882030179738649
DIVERSKQVRK	11	Unmodified	_DIVERSKQVRK_					0	0	0			REV__nc|ENSG00000084110|P42357-2|HAL	REV__nc|ENSG00000084110|P42357-2|HAL	MULTI-SECPEP	A375_MHC_IP_R1	1	453.16534423828125	3	453.268525	1356.78375	-0.5591	-0.00025342	1.3594	0.00061617	0.8003	0.00036275	453.26890042172573	143	1.2638	143	141.93	143.19	0					24	24	2	0	0	0	1.0002	1	54874	54874		0.45452	0	1	1707300	+		6059	16818	4114	4160	5904	5904					0.11962611674539403
DIVGATLMISF	11	Unmodified	_DIVGATLMISF_					0	0	0		tr|U7STT8|U7STT8_FUSNUManganese/zinc/irontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01565PE=3SV=1	tr|U7STT8|U7STT8_FUSNUManganese/zinc/irontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01565PE=3SV=1	tr|U7STT8|U7STT8_FUSNUManganese/zinc/irontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01565PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	583.707275390625	2	583.809925	1165.6053	-0.46487	-0.0002714	0.0013772	8.0404E-07	-0.4635	-0.00027059	583.810287120745	67.183	0.45636	67.919	67.698	68.155	0.73631					14	8	2	0	0	0	0.90584	1	25406	25406		17.113	5.4726	1	1142100			6060	29712	4115	4161	5905	5905					0.029118057113009854
DIVKIATVNI	10	Unmodified	_DIVKIATVNI_					0	0	0		ENSG00000051341|ENST00000264233|POLQ;nc|ENSG00000051341|O75417-2|POLQ	ENSG00000051341|ENST00000264233|POLQ	ENSG00000051341|ENST00000264233|POLQ	MULTI-SECPEP	A375_MHC_IP_R1	1	543.7324829101562	2	543.331882	1084.64921	-0.77728	-0.00042232	-0.19616	-0.00010658	-0.97344	-0.0005289	543.8332954882486	84.41	0.30265	84.41	84.191	84.494	0					11	5	3	0	0	0	0.91516	1	30892	30892		15.248	0	1	1638700			6061	1235	4116	4162	5906	5906					0.11027158199954101
DIVNTPKPNER	11	Unmodified	_DIVNTPKPNER_					0	0	0		ACTN2|p.D241N|2|0.19|ENSG00000077522|chr1:236735658-236735658|G/A|missense_variant	ACTN2|p.D241N|2|0.19|ENSG00000077522|chr1:236735658-236735658|G/A|missense_variant	ACTN2|p.D241N|2|0.19|ENSG00000077522|chr1:236735658-236735658|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	428.2726745605469	3	428.229848	1281.66771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.46	1	24.09	23.59	24.59	0.63014								0	0	0	0.16203	1	7550	7550		4.1166	1.4854	1				6062	38	4117	4163	5907	5907					0.03814668103859731
DIVQFVPYRRF	11	Unmodified	_DIVQFVPYRRF_					0	0	0		ENSG00000214078|ENST00000397443|CPNE1;ENST00000401607.6_1_20:34214165-34218368:-|nuORF;ENST00000483495.5_1_20:34214165-34218616:-|nuORF;ENST00000473373.1_1_20:34214440-34214716:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MSMS	A375_MHC_IP_R2	2	720.3951416015625	2	720.393336	1438.77212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.588	1	82.331	81.831	82.831	0.74293								0	0	0	0.16203	1	30986	30986		8.1555	1.0538	1				6063	9604	4118	4164	5908	5908					0.07028414651222192
DIVRENTDN	9	Unmodified	_DIVRENTDN_					0	0	0		nc|ENSG00000150471|Q9HAR2-2|ADGRL3;nc|ENSG00000150471|Q9HAR2|ADGRL3;nc|ENSG00000150471|Q9HAR2-4|ADGRL3;ENSG00000150471|ENST00000683033|ADGRL3	nc|ENSG00000150471|Q9HAR2-2|ADGRL3	nc|ENSG00000150471|Q9HAR2-2|ADGRL3	MULTI-MSMS	A375_MHC_IP_R2	2	359.4282531738281	3	359.171999	1074.49417	-0.63117	-0.0002267	1.9017	0.00068305	1.2706	0.00045635	359.1733459257755	25.903	1.5245	26.563	25.992	27.517	0.65992					50	29	4	0	0	0	0.70307	1	8708	8708		4.1895	0.31317	1	5766100			6064	5845	4119	4165	5909	5909					-0.040101176724192555
DIVRQLIEV	9	Unmodified	_DIVRQLIEV_					0	0	0			REV__ENSG00000117318|ENST00000374561|ID3	REV__ENSG00000117318|ENST00000374561|ID3	MULTI-SECPEP	A375_MHC_IP_R1	1	543.2213745117188	2	542.821681	1083.62881	-0.47425	-0.00025744	0.2062	0.00011193	-0.26806	-0.00014551	542.8218201877468	93.374	0.86716	93.374	93.023	93.89	0					33	16	3	0	0	0	0.083712	1	34265	34265		56.177	0	1	7866900	+		6065	18003	4120	4166	5910	5910					0.09033987540146882
DIVRVWDL	8	Unmodified	_DIVRVWDL_					0	0	0			REV__nc|ENSG00000183826|Q96Q07-3|BTBD9	REV__nc|ENSG00000183826|Q96Q07-3|BTBD9	MULTI-SECPEP	A375_MHC_IP_R2	2	508.68206787109375	2	508.282192	1014.54983	-0.6331	-0.00032179	0.02879	1.4633E-05	-0.60431	-0.00030716	508.2821812906732	68.612	0.65815	69.347	69.018	69.677	0.73511					23	12	2	0	0	0	0.8957	1	26000	26000		10.824	5.5933	1	6420700	+		6066	21783	4121	4167	5911	5911					0.04313760305853975
DIVSILVLL	9	Unmodified	_DIVSILVLL_					0	0	0			REV__nc|ENSG00000006283|O43497-27|CACNA1G	REV__nc|ENSG00000006283|O43497-27|CACNA1G	MULTI-MSMS	A375_MHC_IP_R1	1	987.3143920898438	1	984.63396	983.626684	-0.1602	-0.00015774	0.28547	0.00028108	0.12527	0.00012334	984.6341158701188	139.04	1.3202	139.04	138.86	140.18	0					75	25	4	0	0	0	0.58047	1	53578	53578		15.847	0	1	45048000	+		6067	16133	4122	4168	5912	5912					0.1342155880233804
DIVTRWRKSS	10	Unmodified	_DIVTRWRKSS_					0	0	0		tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	623.714111328125	2	624.346386	1246.67822	-0.85205	-0.00053198	-3.5022	-0.0021866	-4.3542	-0.0027186	624.3440763979991	66.812	0.66168	67.548	67.189	67.85	0.73631					24	12	3	0	0	0	0.91909	1	25260	25260		5.7319	0.43497	1	2238000			6068	30043	4123	4169	5913	5913					0.0647469554894542
DIWFSLTFL	9	Unmodified	_DIWFSLTFL_					0	0	0			REV__CCR1|p.P88S|1|0.52|ENSG00000163823|chr3:46204052-46204052|G/A|missense_variant	REV__CCR1|p.P88S|1|0.52|ENSG00000163823|chr3:46204052-46204052|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	380.9609680175781	3	381.202459	1140.58555	0.18818	7.1735E-05	-0.80884	-0.00030833	-0.62065	-0.0002366	381.53652780086685	25.74	0.50669	25.74	25.46	25.966	0					14	9	2	0	0	0	0.73363	1	7509	7509		7.1017	4.6669	1	2303100	+		6069	15607	4124	4170	5914	5914					0.02087797762851551
DIWKLFRNF	9	Unmodified	_DIWKLFRNF_					0	0	0		ENSG00000125965|ENST00000374369|GDF5	ENSG00000125965|ENST00000374369|GDF5	ENSG00000125965|ENST00000374369|GDF5	MULTI-SECPEP	A375_MHC_IP_R1	1	413.95947265625	3	413.560869	1237.66078	-0.045229	-1.8705E-05	2.1203	0.00087688	2.0751	0.00085818	413.5599758122187	67.544	0.96891	67.544	66.836	67.804	0					39	18	4	0	0	0	0.73926	1	24477	24477		12.873	1.9736	1	3844100			6070	4012	4125	4171	5915	5915					0.051454000139528944
DIWSLLKKF	9	Unmodified	_DIWSLLKKF_					0	0	0		nc|ENSG00000151233|Q4G148-2|GXYLT1;ENSG00000151233|ENST00000398675|GXYLT1	nc|ENSG00000151233|Q4G148-2|GXYLT1	nc|ENSG00000151233|Q4G148-2|GXYLT1	MSMS	A375_MHC_IP_R1	1	383.6399841308594	3	383.893737	1148.65938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.008	1	46.008	45.508	46.508	0								0	0	0	0.15438	1	16124	16124		14.405	5.66	1				6071	5889	4126	4172	5916	5916					0.09099765925179781
DIWTIYTNPD	10	Unmodified	_DIWTIYTNPD_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MSMS	A375_MHC_IP_R2	2	619.2538452148438	2	619.290411	1236.56627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.173	1	64.914	64.414	65.414	0.74022								0	0	0	0.15308	1	24334	24334		10.824	0	1		+		6072	22253	4127	4173	5917	5917					-0.04255203318689382
DIYCSDTALY	10	Unmodified	_DIYCSDTALY_					0	0	0		nc|ENSG00000183092|Q9BUH8|BEGAIN;ENSG00000183092|ENST00000554140|BEGAIN	nc|ENSG00000183092|Q9BUH8|BEGAIN	nc|ENSG00000183092|Q9BUH8|BEGAIN	MSMS	A375_MHC_IP_R2	2	582.1749877929688	2	582.249897	1162.48524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.321	1	93.06	92.56	93.56	0.73902								0	0	0	0.15308	1	35112	35112		10.824	2.9138	1				6073	8465	4128	4174	5918	5918					-0.08950227353125229
DIYDHGDVN	9	Unmodified	_DIYDHGDVN_					0	0	0			REV__tr|U7SSE4|U7SSE4_FUSNUUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murEPE=3SV=1	REV__tr|U7SSE4|U7SSE4_FUSNUUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murEPE=3SV=1	MSMS	A375_MHC_IP_R1	1	524.1433715820312	2	524.222528	1046.4305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.162	1	55.162	54.662	55.662	0								0	0	0	0.1499	1	19719	19719		21.747	5.8995	1		+		6074	28425	4129	4175	5919	5919					-0.090854781095004
DIYNEKGY	8	Unmodified	_DIYNEKGY_					0	0	0		ENSG00000137473|ENST00000325106|TTC29;nc|ENSG00000137473|Q8NA56-2|TTC29	ENSG00000137473|ENST00000325106|TTC29	ENSG00000137473|ENST00000325106|TTC29	MULTI-SECPEP	A375_MHC_IP_R2	2	500.47515869140625	2	501.232364	1000.45018	-0.47108	-0.00023612	0.93113	0.00046671	0.46005	0.00023059	501.23323111033375	93.445	0.45662	94.19	93.956	94.412	0.74473					14	8	2	0	0	0	0.96296	1	35448	35448		10.183	8.1236	1	799180			6075	4885	4130	4176	5920	5920					-0.05003102098760337
DIYYCSNSY	9	Unmodified	_DIYYCSNSY_					0	0	0			REV__KLRC3|p.G132D|1|0.33|ENSG00000205810|chr12:10418435-10418435|C/T|missense_variant	REV__KLRC3|p.G132D|1|0.33|ENSG00000205810|chr12:10418435-10418435|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	564.2326049804688	2	564.221139	1126.42773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.252	1	70.252	69.752	70.752	0								0	0	0	0.15486	1	25504	25504		7.9102	2.6795	1		+		6076	26863	4131	4177	5921	5921					-0.13043069558693787
DIYYVLGL	8	Unmodified	_DIYYVLGL_					0	0	0		ENST00000523135.1_1_5:179680521-179691830:-|nuORF	ENST00000523135.1_1_5:179680521-179691830:-|nuORF	ENST00000523135.1_1_5:179680521-179691830:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	478.15948486328125	2	478.260394	954.506234	-0.43489	-0.00020799	1.7675	0.0008453	1.3326	0.00063731	478.26126705452543	101.27	0.81654	102.03	101.55	102.36	0.76428					23	15	2	0	0	0	0.93416	1	38345	38345		14.582	2.0501	1	4604200			6077	13034	4132	4178	5922	5922					0.027161508087147013
DKAENREKLEK	11	Unmodified	_DKAENREKLEK_					0	0	0		ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MSMS	A375_MHC_IP_R1	1	680.6517333984375	2	680.364973	1358.71539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.26	1	125.26	124.76	125.76	0								0	0	0	0.15971	1	47566	47566		14.405	2.9107	1				6078	1572	4133	4179	5923	5923					0.05038322304039866
DKAFSVRQSW	10	Unmodified	_DKAFSVRQSW_					0	0	0			REV__nc|ENSG00000106683|P53667-4|LIMK1	REV__nc|ENSG00000106683|P53667-4|LIMK1	MSMS	A375_MHC_IP_R2	2	612.309814453125	2	612.312012	1222.60947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.88	1	120.41	119.91	120.91	0.5321								0	0	0	0.15038	1	45690	45690		17.113	4.8722	1		+		6079	27161	4134	4180	5924	5924					0.0070703124922602
DKAGKVRKHAT	11	Unmodified	_DKAGKVRKHAT_					0	0	0		ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	MSMS	A375_MHC_IP_R2	2	605.8571166992188	2	605.854378	1209.6942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.865	1	86.599	86.099	87.099	0.73412								0	0	0	0.16223	1	32651	32651		7.1017	1.3699	1				6080	6678	4135	4181	5925	5925					0.09774401785853115
DKAKELILY	9	Unmodified	_DKAKELILY_					0	0	0			REV__tr|U7SQT0|U7SQT0_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01677PE=4SV=1	REV__tr|U7SQT0|U7SQT0_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01677PE=4SV=1	MSMS	A375_MHC_IP_R1	1	364.9228820800781	3	364.881497	1091.62266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.492	1	42.492	41.992	42.992	0								0	0	0	0.15486	1	14732	14732		7.609	0.88579	1		+		6081	28382	4136	4182	5926	5926					0.08051469308611559
DKALVENYTV	10	Unmodified	_DKALVENYTV_					0	0	0			REV__tr|U7SFQ8|U7SFQ8_FUSNUUridylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrHPE=3SV=1	REV__tr|U7SFQ8|U7SFQ8_FUSNUUridylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrHPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	384.2923278808594	3	384.536278	1150.587	-0.36399	-0.00013997	0.52452	0.0002017	0.16053	6.1731E-05	384.5364292837759	24.014	0.51006	24.653	24.341	24.851	0.63815					13	9	2	0	0	0	0.87043	1	7676	7676		9.7643	2.2872	1	2260800	+		6082	28169	4137	4183	5927	5927					0.017733870609163205
DKANKSNQ	8	Unmodified	_DKANKSNQ_					0	0	0			REV__ENSG00000176749|ENST00000313401|CDK5R1	REV__ENSG00000176749|ENST00000313401|CDK5R1	MULTI-SECPEP	A375_MHC_IP_R1	1	903.6982421875	1	904.448285	903.441008	0.090103	8.1493E-05	2.5836	0.0023367	2.6737	0.0024182	904.4526731133288	117.23	1.7273	117.23	115.73	117.46	0					42	33	2	0	0	0	0.91117	1	42504	42504		16.149	0	1	43970000	+		6083	21416	4138	4184	5928	5928					-0.01457450664429416
DKARERFTENF	11	Unmodified	_DKARERFTENF_					0	0	0		ENSG00000164252|ENST00000312916|AGGF1	ENSG00000164252|ENST00000312916|AGGF1	ENSG00000164252|ENST00000312916|AGGF1	MSMS	A375_MHC_IP_R2	2	471.466552734375	3	471.568752	1411.68443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.279	1	29.978	29.478	30.478	0.69872								0	0	0	0.16316	1	10210	10210		2.2527	0	1				6084	6809	4139	4185	5929	5929					-0.004948310102008691
DKAVRCRAPL	10	Unmodified	_DKAVRCRAPL_					0	0	0		ENST00000558838.1_1_15:101845315-101845453:+|nuORF	ENST00000558838.1_1_15:101845315-101845453:+|nuORF	ENST00000558838.1_1_15:101845315-101845453:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	377.2815856933594	3	376.881725	1127.62335	0.22617	8.5239E-05	-0.60253	-0.00022708	-0.37636	-0.00014184	376.88149018697464	73.782	0.6106	74.517	74.345	74.956	0.7354					19	11	3	0	0	0	0.71076	1	28042	28042		7.4771	2.0744	1	1429300			6085	13474	4140	4186	5930	5930					0.06463985476671041
DKCNFGAPNH	10	Unmodified	_DKCNFGAPNH_					0	0	0			REV__ENSG00000087302|ENST00000261700|RTRAF	REV__ENSG00000087302|ENST00000261700|RTRAF	MULTI-SECPEP	A375_MHC_IP_R1	1	367.4966125488281	3	368.162669	1101.46618	0.40031	0.00014738	-0.64062	-0.00023585	-0.24031	-8.8473E-05	368.16244290315154	70.379	0.35992	70.379	70.185	70.545	0					11	6	2	0	0	0	0.94421	1	25538	25538		0.69767	0	1	619820	+		6086	16872	4141	4187	5931	5931					-0.08049719133509825
DKDDHEDHDD	10	Unmodified	_DKDDHEDHDD_					0	0	0		NOL4|p.E385K|2|0.32|ENSG00000101746|chr18:33958322-33958322|C/T|missense_variant	NOL4|p.E385K|2|0.32|ENSG00000101746|chr18:33958322-33958322|C/T|missense_variant	NOL4|p.E385K|2|0.32|ENSG00000101746|chr18:33958322-33958322|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	620.712158203125	2	620.721078	1239.4276	0.0052983	3.2888E-06	-1.8486	-0.0011475	-1.8433	-0.0011442	620.7207910211579	113.42	1.4712	113.42	112.28	113.75	0					57	24	3	0	0	0	0.71944	2	41307	41307;41341		3.5965	0.31518	1	7496700			6087	15013	4142	4188	5932;5933	5932					-0.1825339802499002
DKDEIPTISSY	11	Unmodified	_DKDEIPTISSY_					0	0	0		ENSG00000227729|ENST00000557640|RD3L	ENSG00000227729|ENST00000557640|RD3L	ENSG00000227729|ENST00000557640|RD3L	MULTI-MSMS	A375_MHC_IP_R1	1	634.7057495117188	2	634.306258	1266.59796	-0.69395	-0.00044018	0.5019	0.00031836	-0.19206	-0.00012182	634.3066202296612	64.313	0.45628	64.313	64.141	64.597	0					14	8	2	0	0	0	0.16416	1	23282	23282		59.052	20.438	1	1878200			6088	9710	4143	4189	5934	5934					-0.02467255355418274
DKDEIPTISSY	11	Unmodified	_DKDEIPTISSY_					0	0	0		ENSG00000227729|ENST00000557640|RD3L	ENSG00000227729|ENST00000557640|RD3L	ENSG00000227729|ENST00000557640|RD3L	MULTI-MSMS	A375_MHC_IP_R2	2	634.7056884765625	2	634.306258	1266.59796	-0.72536	-0.0004601	1.2308	0.00078072	0.50547	0.00032062	634.3068889674958	63.813	0.50748	64.553	64.292	64.8	0.74022					20	9	3	0	0	0	0.17486	1	24220	24220		57.249	17.01	1	2028900			6089	9710	4143	4189	5935	5935					-0.02467255355418274
DKDGKESW	8	Unmodified	_DKDGKESW_					0	0	0			REV__ENSG00000179008|ENST00000321731|C14orf39	REV__ENSG00000179008|ENST00000321731|C14orf39	MULTI-MSMS	A375_MHC_IP_R2	2	482.668701171875	2	482.722164	963.429775	-0.49042	-0.00023674	-0.48506	-0.00023415	-0.97548	-0.00047088	482.7217786301068	91.62	0.76004	92.354	92.071	92.831	0.7345					29	14	3	0	0	0	0.7758	1	35014	35014		10.183	2.0279	1	3824500	+		6090	21535	4144	4190	5936	5936					-0.05340272758576248
DKDINKKLF	9	Unmodified	_DKDINKKLF_					0	0	0			REV__tr|U7SH77|U7SH77_FUSNUDNApolymeraseIII,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02212PE=3SV=1	REV__tr|U7SH77|U7SH77_FUSNUDNApolymeraseIII,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02212PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	373.9411926269531	3	374.21688	1119.62881	0.46273	0.00017316	-0.037642	-1.4086E-05	0.42509	0.00015908	374.2168774972183	40.628	0.4063	40.628	40.406	40.813	0					12	7	3	0	0	0	0.80535	1	13913	13913		0.86438	0	1	1104100	+		6091	28199	4145	4191	5937	5937					0.07377987540121467
DKDNKLPSRVR	11	Unmodified	_DKDNKLPSRVR_					0	0	0			REV__nc|ENSG00000100207|Q9UGU0-2|TCF20	REV__nc|ENSG00000100207|Q9UGU0-2|TCF20	MSMS	A375_MHC_IP_R2	2	664.025634765625	2	664.375675	1326.7368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.024	1	83.763	83.263	84.263	0.73962								0	0	0	0.16265	1	31549	31549		4.897	0	1		+		6092	17058	4146	4192	5938	5938					0.08649752123392318
DKEETDSSDS	10	Unmodified	_DKEETDSSDS_					0	0	0			REV__ENSG00000198042|ENST00000360128|MAK16	REV__ENSG00000198042|ENST00000360128|MAK16	MULTI-MSMS	A375_MHC_IP_R2	2	556.67919921875	2	556.71493	1111.41531	-0.94115	-0.00052395	-1.8845	-0.0010492	-2.8257	-0.0015731	556.7137798248192	35.901	0.30624	36.664	36.384	36.69	0.76338					8	5	2	0	0	0	0.70012	1	13045	13045		12.241	2.8575	1	1007200	+		6093	22339	4147	4193	5939	5939					-0.13594434488027218
DKEGKVVKKHK	11	Unmodified	_DKEGKVVKKHK_					0	0	0		ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11;ANKRD11|p.A1681Efs*5|1|0.79|ENSG00000167522|chr16:89281500-89281500|G/-|frameshift_variant;ANKRD11|p.T1707Rfs*12|1|0.86|ENSG00000167522|chr16:89281424-89281424|A/-|frameshift_variant	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	648.1067504882812	2	648.393336	1294.77212	-0.60022	-0.00038918	-1.0472	-0.00067903	-1.6475	-0.0010682	648.3923948644689	134.89	0.25439	134.89	134.73	134.98	0					7	4	2	0	0	0	1.0013	1	52025	52025		0.96228	0.50394	1	812130			6094	7188	4148	4194	5940	5940					0.13652414651210165
DKEIEQLIE	9	Unmodified	_DKEIEQLIE_					0	0	0		nc|ENSG00000183023|P32418-2|SLC8A1;nc|ENSG00000183023|P32418-3|SLC8A1;nc|ENSG00000183023|P32418-4|SLC8A1;nc|ENSG00000183023|P32418-5|SLC8A1;ENSG00000183023|ENST00000332839|SLC8A1	nc|ENSG00000183023|P32418-2|SLC8A1	nc|ENSG00000183023|P32418-2|SLC8A1	MULTI-SECPEP	A375_MHC_IP_R2	2	372.6161193847656	3	372.864283	1115.57102	0.10153	3.7855E-05	1.3158	0.00049061	1.4173	0.00052847	372.8646245073768	20.909	0.45626	21.52	21.21	21.666	0.61029					13	8	2	0	0	0	0.78353	1	6461	6461		6.1918	0	1	830200			6095	8456	4149	4195	5941	5941					0.017856808240594546
DKEILDLQAQL	11	Unmodified	_DKEILDLQAQL_					0	0	0			REV__ENST00000570734.1_2_17:80696358-80706928:+|nuORF	REV__ENST00000570734.1_2_17:80696358-80706928:+|nuORF	MSMS	A375_MHC_IP_R1	1	643.3040161132812	2	643.353542	1284.69253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.355	1	82.355	81.855	82.855	0								0	0	0	0.16203	1	30116	30116		8.1555	0.54658	1		+		6096	20752	4150	4196	5942	5942					0.06157303186591889
DKEKLRKLTTR	11	Unmodified	_DKEKLRKLTTR_					0	0	0		nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1;PDXDC1|p.Y281Cfs*12|1|0.22|ENSG00000179889|chr16:15017148-15017149|TA/-|frameshift_variant;nc|ENSG00000179889|Q6P996-2|PDXDC1;ENST00000570001.5_1_16:15069056-15125764:+|nuORF	nc|ENSG00000179889|Q6P996-4|PDXDC1	nc|ENSG00000179889|Q6P996-4|PDXDC1	MULTI-SECPEP	A375_MHC_IP_R2	2	464.0176696777344	3	463.284175	1386.8307	-0.54293	-0.00025153	-0.60387	-0.00027976	-1.1468	-0.00053129	463.28384569889374	131.34	1.1195	131.53	130.88	132	0.18953					68	21	4	0	0	0	1.001	1	51519	51519		0	0	1	17226000			6097	8258	4151	4197	5943	5943					0.15275471225686488
DKELIEYF	8	Unmodified	_DKELIEYF_					0	0	0		ENSG00000111361|ENST00000424014|EIF2B1;ENST00000543940.1_1_12:124114818-124118191:-|nuORF;ENST00000452159.6_1_12:124114706-124118224:-|nuORF;nc|ENSG00000111361|Q14232-2|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	MULTI-SECPEP	A375_MHC_IP_R1	1	353.301025390625	3	352.846452	1055.51753	0.019587	6.9112E-06	-0.46125	-0.00016275	-0.44166	-0.00015584	352.8461018284926	23.131	0.50359	23.131	22.723	23.227	0					13	9	2	0	0	0	0.972	1	6225	6225		5.7319	0.83484	1	2147200			6098	2988	4152	4198	5944	5944					-0.008010718878267653
DKELIQLIKQR	11	Unmodified	_DKELIQLIKQR_					0	0	0		ENSG00000103994|ENST00000564754|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106;ZNF106|p.S482Pfs*33|1|0.38|ENSG00000103994|chr15:42450759-42450759|A/-|frameshift_variant;ENST00000433596.1_1_2:43908485-43908692:-|nuORF	ENSG00000103994|ENST00000564754|ZNF106	ENSG00000103994|ENST00000564754|ZNF106	MULTI-MSMS	A375_MHC_IP_R1	1	692.8193969726562	2	692.419551	1382.82455	-0.97254	-0.00067341	0.34448	0.00023852	-0.62806	-0.00043488	692.4199661192902	142.47	1.2155	142.47	141.37	142.59	0					32	23	2	0	0	0	0.73886	1	54578	54578		1.3295	0.13619	1	3369700			6099	2477	4153	4199	5945	5945					0.14844952994167215
DKERHGVAIY	10	Unmodified	_DKERHGVAIY_					0	0	0		ENSG00000134516|ENST00000520908|DOCK2;ENST00000522138.1_1_5:169064330-169108764:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2	ENSG00000134516|ENST00000520908|DOCK2	MSMS	A375_MHC_IP_R2	2	396.59326171875	3	396.543767	1186.60947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.115	1	24.758	24.258	25.258	0.64368								0	0	0	0.14741	1	7870	7870		14.957	4.1577	1				6100	4583	4154	4200	5946	5946					0.023630312492286976
DKERIQIW	8	Unmodified	_DKERIQIW_					0	0	0		ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	MULTI-MSMS	A375_MHC_IP_R1	1	544.6986083984375	2	544.298373	1086.58219	-0.40872	-0.00022246	0.17851	9.7162E-05	-0.23021	-0.0001253	544.2984564905528	110.47	0.91497	110.47	110.04	110.95	0					54	17	4	0	0	0	0.16381	1	40438	40438		81.613	4.7883	1	45730000			6101	7641	4155	4201	5947	5947					0.04236547708865146
DKERLEKW	8	Unmodified	_DKERLEKW_					0	0	0		ENST00000484452.1_1_7:108206198-108210073:-|nuORF;ENSG00000177683|ENST00000415914|THAP5	ENST00000484452.1_1_7:108206198-108210073:-|nuORF;ENSG00000177683|ENST00000415914|THAP5	ENST00000484452.1_1_7:108206198-108210073:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	551.9533081054688	2	552.29583	1102.57711	-0.56172	-0.00031024	-0.0009514	-5.2545E-07	-0.56267	-0.00031076	552.2955982566742	94.355	1.3161	95.1	94.463	95.779	0.74474					63	25	3	0	0	0	0.9187	1	35881	35881		19.257	3.4098	1	4603300			6102	12563;8101	4156	4202	5948	5948					0.029922438462335776
DKESSSDREKP	11	Unmodified	_DKESSSDREKP_					0	0	0			REV__CIC|p.V442Gfs*2|1|0.14|ENSG00000079432|chr19:42289371-42289393|TCATCTGTGAGGAGGAAGGGGAT/-|frameshift_variant	REV__CIC|p.V442Gfs*2|1|0.14|ENSG00000079432|chr19:42289371-42289393|TCATCTGTGAGGAGGAAGGGGAT/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	639.3047485351562	2	639.302038	1276.58952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.483	1	92.217	91.717	92.717	0.7345								0	0	0	0.16203	1	34798	34798		8.1555	0	1		+		6103	15791	4157	4203	5949	5949					-0.037708092720322384
DKFAKMKA	8	Unmodified	_DKFAKMKA_					0	0	0			REV__ENSG00000197653|ENST00000673944|DNAH10	REV__ENSG00000197653|ENST00000673944|DNAH10	MSMS	A375_MHC_IP_R1	1	469.6640930175781	2	469.760038	937.505523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.56	1	109.56	109.06	110.06	0								0	0	0	0.16876	1	40184	40184		7.2892	2.0586	1		+		6104	22307	4158	4204	5950	5950					0.03427032888009762
DKFCQQLY	8	Unmodified	_DKFCQQLY_					0	0	0			REV__ENST00000520647.5_1_5:153789305-153796529:+|nuORF	REV__ENST00000520647.5_1_5:153789305-153796529:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	523.144775390625	2	522.744585	1043.47462	-0.34538	-0.00018055	-0.59206	-0.0003095	-0.93744	-0.00049004	522.7450553736849	111.28	0.61568	111.28	110.95	111.57	0					29	11	4	0	0	0	0.92636	1	40820	40820		23.148	0	1	3281500	+		6105	25703	4159	4205	5951	5951					-0.045381652168771325
DKFEHQFETL	10	Unmodified	_DKFEHQFETL_					0	0	0		ENSG00000255112|ENST00000526991|CHMP1B	ENSG00000255112|ENST00000526991|CHMP1B	ENSG00000255112|ENST00000526991|CHMP1B	MULTI-SECPEP	A375_MHC_IP_R2	2	432.2750244140625	3	431.875182	1292.60372	-0.27591	-0.00011916	-0.3916	-0.00016912	-0.66751	-0.00028828	431.87513726036764	39.748	0.55894	40.523	40.269	40.828	0.77451					14	10	2	0	0	0	0.93999	1	14723	14723		4.7159	0	1	2113600			6106	9887	4160	4206	5952	5952					-0.03088112053092118
DKFKKLSGTI	10	Unmodified	_DKFKKLSGTI_					0	0	0			REV__ENSG00000204616|ENST00000376734|TRIM31	REV__ENSG00000204616|ENST00000376734|TRIM31	MSMS	A375_MHC_IP_R1	1	379.5966491699219	3	379.560646	1135.66011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.633	1	31.633	31.133	32.133	0								0	0	0	0.15306	1	10143	10143		10.899	1.355	1		+		6107	22531	4161	4207	5953	5953					0.09770560574247611
DKFNFISVY	9	Unmodified	_DKFNFISVY_					0	0	0		tr|U7SRQ3|U7SRQ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01623PE=4SV=1	tr|U7SRQ3|U7SRQ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01623PE=4SV=1	tr|U7SRQ3|U7SRQ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01623PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	567.187255859375	2	566.787307	1131.56006	-0.28073	-0.00015911	0.43237	0.00024506	0.15165	8.5951E-05	566.7871583036282	68.213	0.71173	68.948	68.56	69.272	0.73512					28	13	3	0	0	0	0.13797	1	25826	25826		43.858	2.0187	1	6120100			6108	29618	4162	4208	5954	5954					-0.0004567675957787287
DKFQILFCT	9	Unmodified	_DKFQILFCT_					0	0	0			REV__ENSG00000172794|ENST00000392613|RAB37	REV__ENSG00000172794|ENST00000392613|RAB37	MULTI-SECPEP	A375_MHC_IP_R2	2	372.57684326171875	3	372.191565	1113.55287	0.13339	4.9648E-05	1.5354	0.00057145	1.6687	0.00062109	372.1920076308433	23.238	0.3051	23.869	23.623	23.928	0.63014					7	5	2	0	0	0	0.75164	1	7460	7460		3.5871	0	1	1510500	+		6109	21171	4163	4209	5955	5955					0.0006326736834125768
DKFYLTQEI	9	Unmodified	_DKFYLTQEI_					0	0	0			REV__ENST00000430630.2_1_9:123483237-123483414:+|nuORF	REV__ENST00000430630.2_1_9:123483237-123483414:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	579.3668823242188	2	578.797872	1155.58119	-0.23922	-0.00013846	0.36361	0.00021046	0.12439	7.1994E-05	578.7979839603469	64.843	1.6265	65.581	64.848	66.475	0.73811					66	31	4	0	0	0	0.59266	1	24429	24429		15.248	2.206	1	18498000	+		6110	17171	4164	4210	5956	5956					0.009622885492944988
DKFYSFPYH	9	Unmodified	_DKFYSFPYH_					0	0	0			REV__tr|U7STL4|U7STL4_FUSNUDUF452domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01103PE=4SV=1	REV__tr|U7STL4|U7STL4_FUSNUDUF452domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01103PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	401.59796142578125	3	401.85383	1202.53966	-0.34534	-0.00013878	3.1769	0.0012766	2.8316	0.0011379	402.1891716325051	21.4	0.25385	22.02	21.878	22.132	0.61932					6	4	2	0	0	0	0.78348	1	6765	6765		2.4985	0.75621	1	1553900	+		6111	28497	4165	4211	5957	5957					-0.053508474193904476
DKGENLHDHM	10	Unmodified	_DKGENLHDHM_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MSMS	A375_MHC_IP_R2	2	598.2466430664062	2	598.261662	1194.50877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.6	1	113.33	112.83	113.83	0.72458								0	0	0	0.15353	1	42447	42447		9.3831	0.63772	1		+		6112	19778	4166	4212	5958	5958					-0.0807036879593852
DKGFVNILMT	10	Unmodified	_DKGFVNILMT_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-SECPEP	A375_MHC_IP_R1	1	379.5966491699219	3	379.870603	1136.58998	0.40205	0.00015273	1.5413	0.0005855	1.9434	0.00073822	379.87110799119404	31.591	0.3045	31.591	31.465	31.769	0					6	5	2	0	0	0	0.87043	1	10143	10143		13.519	4.2749	1	1287800			6113	2929	4167	4213	5959	5959					0.0271493891409591
DKHHLRHRFYR	11	Unmodified	_DKHHLRHRFYR_					0	0	0		ENSG00000101752|ENST00000261537|MIB1;ENST00000578646.5_1_18:19285077-19371317:+|nuORF	ENSG00000101752|ENST00000261537|MIB1	ENSG00000101752|ENST00000261537|MIB1	MSMS	A375_MHC_IP_R2	2	783.1441650390625	2	782.921449	1563.82835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.32	1	125.62	125.12	126.12	0.2951								0	0	0	0.16302	1	48815	48815		2.9952	0	1				6114	2321	4168	4214	5960	5960					0.06898480331255996
DKHLKGKFS	9	Unmodified	_DKHLKGKFS_					0	0	0			REV__nc|ENSG00000184608|Q96KT0|FAM167A-AS1	REV__nc|ENSG00000184608|Q96KT0|FAM167A-AS1	MULTI-SECPEP	A375_MHC_IP_R1	1	529.962646484375	2	530.300916	1058.58728	-0.41343	-0.00021924	-1.5937	-0.00084512	-2.0071	-0.0010644	530.2994088836224	42.644	0.80961	42.644	42.082	42.891	0					22	15	2	0	0	0	0.53748	1	14645	14645		13.042	0	1	4253100	+		6115	27409	4169	4215	5961	5961					0.0603285157146729
DKHLLRRRARR	11	Unmodified	_DKHLLRRRARR_					0	0	0			REV__ENSG00000153822|ENST00000392671|KCNJ16	REV__ENSG00000153822|ENST00000392671|KCNJ16	MULTI-SECPEP	A375_MHC_IP_R2	2	739.237548828125	2	738.958366	1475.90218	-0.87524	-0.00064676	-3.8976	-0.0028802	-4.7729	-0.003527	739.4570906668221	127.68	0.30329	127.94	127.82	128.12	0.26593					7	5	2	0	0	0	0.99955	1	50121	50121		1.1933	0.12188	1	10612000	+		6116	19851	4170	4216	5962	5962					0.18326448493576208
DKHTIHLTT	9	Unmodified	_DKHTIHLTT_					0	0	0			REV__ENSG00000177558|ENST00000324675|FAM187B	REV__ENSG00000177558|ENST00000324675|FAM187B	MULTI-SECPEP	A375_MHC_IP_R2	2	355.4598083496094	3	355.861096	1064.56146	-0.45382	-0.0001615	-0.15732	-5.5983E-05	-0.61113	-0.00021748	355.8610017303641	34.417	0.2555	35.17	35.057	35.312	0.75225					8	4	2	0	0	0	0.75164	1	12453	12453		9.544	1.0997	1	1469600	+		6117	21462	4171	4217	5963	5963					0.031759573291765264
DKIDISAVV	9	Unmodified	_DKIDISAVV_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16554719-16554995:-|nuORF;ENST00000556217.5_1_14:21837875-21852161:-|nuORF;SUPT16H|p.L308Dfs*4|1|0.07|ENSG00000092201|chr14:21368276-21368303|TAATTCCTTCAGCAGCTCCTCTTGAAGC/-|frameshift_variant	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	A375_MHC_IP_R1	1	480.6740417480469	2	480.274032	958.533512	-0.40783	-0.00019587	-0.12342	-5.9274E-05	-0.53124	-0.00025514	480.27399636309656	99.098	0.55711	99.098	98.762	99.319	0					22	10	3	0	0	0	0.17338	1	36394	36394		39.95	3.8227	1	2744600			6118	2000	4172	4218	5964	5964					0.05258634349104341
DKIICNFDQ	9	Unmodified	_DKIICNFDQ_					0	0	0			REV__RAPGEF3|p.R344C|1|0.28|ENSG00000079337|chr12:47749401-47749401|G/A|missense_variant	REV__RAPGEF3|p.R344C|1|0.28|ENSG00000079337|chr12:47749401-47749401|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	365.98541259765625	3	365.842825	1094.50665	-0.021387	-7.8242E-06	0.076374	2.7941E-05	0.054987	2.0117E-05	365.8428648434498	39.699	0.5064	39.699	39.441	39.948	0					16	9	2	0	0	0	0.73926	1	13677	13677		8.9762	3.1928	1	3183300	+		6119	27866	4173	4219	5965	5965					-0.03682797533747362
DKIPLSGSF	9	Unmodified	_DKIPLSGSF_					0	0	0			REV__nc|ENSG00000122367|O75112-4|LDB3	REV__nc|ENSG00000122367|O75112-4|LDB3	MSMS	A375_MHC_IP_R1	1	482.1868896484375	2	482.260925	962.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.59	1	32.59	32.09	33.09	0								0	0	0	0.13141	1	10544	10544		32.305	2.0807	1		+		6120	27201	4174	4220	5966	5966					0.024543651776298248
DKIYEELF	8	Unmodified	_DKIYEELF_					0	0	0			REV__tr|U7ST99|U7ST99_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00978PE=4SV=1	REV__tr|U7ST99|U7ST99_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00978PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	352.2742004394531	3	352.846452	1055.51753	-0.50541	-0.00017833	0.72001	0.00025405	0.2146	7.572E-05	352.8463678555369	58.07	0.65865	58.819	58.629	59.287	0.74894					18	12	2	0	0	0	0.97144	1	22140	22140		3.5965	1.098	1	724970	+		6121	28467	4175	4221	5967	5967					-0.008010718878267653
DKIYEELF	8	Unmodified	_DKIYEELF_					0	0	0			REV__tr|U7ST99|U7ST99_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00978PE=4SV=1	REV__tr|U7ST99|U7ST99_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00978PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		3	352.846452	1055.51753	-0.13948	-4.9214E-05	1.0351	0.00036525	0.89567	0.00031603	353.1812930704687	59.055	0.71236	59.055	58.633	59.346	0	0.11814	0.00017646	NaN	3.5965	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1006700	+		6122	28467	4175	4221							-0.008010718878267653
DKKCRLSVF	9	Unmodified	_DKKCRLSVF_					0	0	0		ENST00000335281.8_1_14:52433988-52434075:+|nuORF	ENST00000335281.8_1_14:52433988-52434075:+|nuORF	ENST00000335281.8_1_14:52433988-52434075:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	366.27069091796875	3	365.870826	1094.59065	-0.19461	-7.1201E-05	0.22089	8.0819E-05	0.026289	9.6182E-06	365.8708181055263	23.784	0.4077	24.414	24.129	24.537	0.63014					14	7	3	0	0	0	0.62591	1	7731	7731		13.615	0.74226	1	6083500			6123	10805	4176	4222	5968	5968					0.04713778353811904
DKKDGFQQ	8	Unmodified	_DKKDGFQQ_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B;ENSG00000130477|ENST00000519716|UNC13A;ENSG00000137766|ENST00000260323|UNC13C	ENSG00000198722|ENST00000635942|UNC13B;ENSG00000137766|ENST00000260323|UNC13C	ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	A375_MHC_IP_R1	1	482.6352233886719	2	483.237981	964.461409	-0.46654	-0.00022545	1.2085	0.00058402	0.74201	0.00035857	483.23852743875534	27.213	0.55352	27.213	26.878	27.432	0					11	10	2	0	0	0	0.96266	1	8219	8219		16.942	1.0951	1	2763800			6124	9308;4911	4177	4223	5969	5969					-0.022242800046115008
DKKDKGIGYI	10	Unmodified	_DKKDKGIGYI_					0	0	0			REV__tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	REV__tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	379.9278564453125	3	379.548518	1135.62372	-0.39135	-0.00014854	0.16807	6.3791E-05	-0.22328	-8.4745E-05	379.54883273973917	25.604	0.96713	26.264	25.838	26.805	0.65992					30	18	3	0	0	0	0.88361	1	8401	8401		15.739	2.22	1	4569900	+		6125	28383	4178	4224	5970	5970					0.06133683677512636
DKKDLQRSFE	10	Unmodified	_DKKDLQRSFE_					0	0	0			REV__MYH4|p.E1297K|2|0.25|ENSG00000264424|chr17:10450872-10450872|C/T|missense_variant	REV__MYH4|p.E1297K|2|0.25|ENSG00000264424|chr17:10450872-10450872|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	423.65802001953125	3	422.554331	1264.64116	0.033589	1.4193E-05	-0.37249	-0.0001574	-0.3389	-0.0001432	422.5542951675304	20.236	0.65841	20.236	19.928	20.587	0					30	12	4	0	0	0	0.71076	1	5074	5074		7.4771	0.85361	1	5095400	+		6126	27061	4179	4225	5971	5971					0.01942979212526552
DKKEIFDYKK	10	Unmodified	_DKKEIFDYKK_					0	0	0			REV__tr|U7SSA3|U7SSA3_FUSNUSigma-54factorinteractiondomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01556PE=4SV=1	REV__tr|U7SSA3|U7SSA3_FUSNUSigma-54factorinteractiondomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01556PE=4SV=1	MSMS	A375_MHC_IP_R1	1	657.4310302734375	2	657.358628	1312.7027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.73	1	128.73	128.23	129.23	0								0	0	0	0.15265	1	49460	49460		12.241	1.4167	1		+		6127	28419	4180	4226	5972	5972					0.05885910911774772
DKKHIGRGGF	10	Unmodified	_DKKHIGRGGF_					0	0	0		tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1	tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1	tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	371.9595947265625	3	372.208718	1113.60433	0.31684	0.00011793	0.43156	0.00016063	0.7484	0.00027856	372.20874671807854	20.06	0.81303	20.06	19.571	20.384	0					23	15	2	0	0	0	0.93405	1	5093	5093		0.45452	0	1	1935600			6128	29410	4181	4227	5973	5973					0.052067721772800724
DKKIPVTV	8	Unmodified	_DKKIPVTV_					0	0	0			REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF	REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	450.68157958984375	2	450.28166	898.548768	-0.15845	-7.1345E-05	-0.15885	-7.1528E-05	-0.3173	-0.00014287	450.28154711256883	34.062	0.76007	34.062	33.848	34.608	0					18	14	2	0	0	0	0.51146	1	11202	11202		61.357	7.5247	1	4747800	+		6129	23380	4182	4228	5974	5974					0.09543545936946884
DKKIPVTV	8	Unmodified	_DKKIPVTV_					0	0	0			REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF	REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	450.6811218261719	2	450.28166	898.548768	-0.08217	-3.7E-05	0.19498	8.7796E-05	0.11281	5.0796E-05	450.28173712524415	54.592	3.8111	54.592	53.707	57.518	0					155	74	5	0	0	0	0.23546	1	19411	19411		65.235	0	1	345200000	+		6130	23380	4182	4228	5975	5975					0.09543545936946884
DKKIPVTV	8	Unmodified	_DKKIPVTV_					0	0	0			REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF	REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	450.6814880371094	2	450.28166	898.548768	-0.47894	-0.00021566	0.032598	1.4678E-05	-0.44634	-0.00020098	450.2815953359243	33.155	0.45909	33.907	33.686	34.146	0.75225					17	8	3	0	0	0	0.51146	1	11851	11851		52.268	6.5687	1	4636000	+		6131	23380	4182	4228	5976	5976					0.09543545936946884
DKKISGKRS	9	Unmodified	_DKKISGKRS_					0	0	0		CNST|p.P109S|2|0.44|ENSG00000162852|chr1:246591887-246591887|C/T|missense_variant	CNST|p.P109S|2|0.44|ENSG00000162852|chr1:246591887-246591887|C/T|missense_variant	CNST|p.P109S|2|0.44|ENSG00000162852|chr1:246591887-246591887|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	510.20318603515625	2	509.803823	1017.59309	-0.49991	-0.00025485	-0.018384	-9.3722E-06	-0.51829	-0.00026423	509.80373660181374	119.31	1.2173	119.31	118.63	119.84	0					36	23	2	0	0	0	0.71416	1	44314	44314		5.7319	1.5423	1	33328000			6132	550	4183	4229	5977	5977					0.08499950083137264
DKKKAIIRNKL	11	Unmodified	_DKKKAIIRNKL_					0	0	0			REV__nc|ENSG00000160746|Q9NW15-4|ANO10	REV__nc|ENSG00000160746|Q9NW15-4|ANO10	MSMS	A375_MHC_IP_R2	2	663.9314575195312	2	663.932628	1325.8507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.04	1	121.49	120.99	121.99	0.44488								0	0	0	0.16302	1	46248	46248		2.9952	0.26005	1		+		6133	20182	4184	4230	5978	5978					0.2008126695629926
DKKKFRRRRR	10	Unmodified	_DKKKFRRRRR_					0	0	0			REV__ENSG00000054598|ENST00000645831|FOXC1	REV__ENSG00000054598|ENST00000645831|FOXC1	MSMS	A375_MHC_IP_R1	1	723.42626953125	2	723.455459	1444.89637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.96	1	129.96	129.46	130.46	0								0	0	0	0.15596	1	49995	49995		1.4819	0.15237	1		+		6134	16405	4185	4231	5979	5979					0.1917134998191159
DKKKKQFRRFK	11	Unmodified	_DKKKKQFRRFK_					0	0	0			REV__PCP4L1|p.R62K|1|0.33|ENSG00000248485|chr1:161284459-161284459|G/A|missense_variant	REV__PCP4L1|p.R62K|1|0.33|ENSG00000248485|chr1:161284459-161284459|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	504.3778991699219	3	503.643927	1507.90995	-0.37787	-0.00019031	-0.8746	-0.00044049	-1.2525	-0.0006308	503.977826247095	24.977	0.35205	24.977	24.852	25.204	0					16	6	3	0	0	0	0.73818	1	7230	7230		1.1098	0.70149	1	16975000	+		6135	27746	4186	4232	5980	5980					0.1763116297047418
DKKKKQFRRFK	11	Unmodified	_DKKKKQFRRFK_					0	0	0			REV__PCP4L1|p.R62K|1|0.33|ENSG00000248485|chr1:161284459-161284459|G/A|missense_variant	REV__PCP4L1|p.R62K|1|0.33|ENSG00000248485|chr1:161284459-161284459|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	504.15069580078125	3	503.643927	1507.90995	-0.37787	-0.00019031	-0.8746	-0.00044049	-1.2525	-0.0006308	503.977826247095	24.977	0.35205	24.977	24.852	25.204	0					16	6	3	0	0	0	1.0012	1	7250	7250		1.1098	1.0264	1	16975000	+		6136	27746	4186	4232	5981	5981					0.1763116297047418
DKKKNPWYLH	10	Unmodified	_DKKKNPWYLH_					0	0	0			REV__nc|ENSG00000189056|P78509-3|RELN	REV__nc|ENSG00000189056|P78509-3|RELN	MSMS	A375_MHC_IP_R1	1	665.0949096679688	2	664.859129	1327.70371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.21	1	122.21	121.71	122.71	0								0	0	0	0.15207	1	45451	45451		13.906	1.6654	1		+		6137	22136	4187	4233	5982	5982					0.05296170071369488
DKKLFKVLILN	11	Unmodified	_DKKLFKVLILN_					0	0	0			REV__ENST00000354179.8_2_5:176638695-176638818:+|nuORF	REV__ENST00000354179.8_2_5:176638695-176638818:+|nuORF	MSMS	A375_MHC_IP_R1	1	665.9281005859375	2	665.92648	1329.83841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.88	1	122.88	122.38	123.38	0								0	0	0	0.16302	1	45822	45822		2.9952	1.5133	1		+		6138	23807	4188	4234	5983	5983					0.1866823049329014
DKKLFRTHVRK	11	Unmodified	_DKKLFRTHVRK_					0	0	0			REV__tr|U7T012|U7T012_FUSNUPeptidaseS8/S53domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00769PE=3SV=1	REV__tr|U7T012|U7T012_FUSNUPeptidaseS8/S53domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00769PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	714.3299560546875	2	714.433327	1426.8521	-0.93853	-0.00067052	-1.1358	-0.00081142	-2.0743	-0.0014819	714.4323812392118	142.49	1.0635	142.49	141.78	142.84	0					37	20	3	0	0	0	0.73897	1	54566	54566		0.35063	0	1	3049200	+		6139	28663	4189	4235	5984	5984					0.15574901045033585
DKKLGGAK	8	Unmodified	_DKKLGGAK_					0	0	0			REV__nc|ENSG00000157168|Q02297-9|NRG1	REV__nc|ENSG00000157168|Q02297-9|NRG1	MULTI-SECPEP	A375_MHC_IP_R2	2	816.89404296875	1	816.493778	815.486502	-0.64927	-0.00053012	1.1803	0.00096368	0.531	0.00043356	816.4944851062377	144.97	0.16721	144.99	144.84	145.01	0.021408					7	3	3	0	0	0	0.972	1	56617	56617		5.2307	0.90143	1	1314800	+		6140	27307	4190	4236	5985	5985					0.07137819588615457
DKKLKEILLQ	10	Unmodified	_DKKLKEILLQ_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-MSMS	A375_MHC_IP_R1	1	615.9556274414062	2	614.387188	1226.75982	-0.69427	-0.00042655	0.026496	1.6279E-05	-0.66778	-0.00041027	614.3870870769123	149.34	2.4004	149.34	147.6	150	0					323	89	5	0	0	0	0.72669	1	56731	56731		0.35063	0.043601	1	7426100			6141	4507	4191	4237	5986	5986					0.15551378188183662
DKKLKKILLQ	10	Unmodified	_DKKLKKILLQ_					0	0	0		MYH11|p.E1853K|1|0.31|ENSG00000133392|chr16:15715220-15715220|C/T|missense_variant	MYH11|p.E1853K|1|0.31|ENSG00000133392|chr16:15715220-15715220|C/T|missense_variant	MYH11|p.E1853K|1|0.31|ENSG00000133392|chr16:15715220-15715220|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	613.9671020507812	2	613.913373	1225.81219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.86	1	119.47	118.97	119.97	0.60909								0	0	0	0.15353	1	45189	45189		9.3831	5.7866	1				6142	14431	4192	4238	5987	5987					0.20831961321800918
DKKLKPKYD	9	Unmodified	_DKKLKPKYD_					0	0	0		ENST00000396387.2_1_22:42504319-42504484:-|nuORF	ENST00000396387.2_1_22:42504319-42504484:-|nuORF	ENST00000396387.2_1_22:42504319-42504484:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	379.2729797363281	3	378.888763	1133.64446	0.56755	0.00021504	-2.62	-0.0009927	-2.0525	-0.00077766	379.2214497776168	42.884	0.60978	42.884	42.587	43.197	0					16	11	2	0	0	0	0.75214	1	14809	14809		5.0475	0.85802	1	1193700			6143	11488	4193	4239	5988	5988					0.08298274057187882
DKKNPYKLK	9	Unmodified	_DKKNPYKLK_					0	0	0		tr|U7SU04|U7SU04_FUSNUATPaseAAA-typecoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01265PE=4SV=1	tr|U7SU04|U7SU04_FUSNUATPaseAAA-typecoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01265PE=4SV=1	tr|U7SU04|U7SU04_FUSNUATPaseAAA-typecoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01265PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	378.574462890625	3	378.560758	1132.66044	-0.18114	-6.8573E-05	-1.3406	-0.00050751	-1.5218	-0.00057608	378.5605504119692	23.433	0.81063	24.063	23.675	24.485	0.63014					26	15	3	0	0	0	0.58268	1	7476	7476		15.739	4.2439	1	4162700			6144	29731	4194	4240	5989	5989					0.09941980294070163
DKKPPKTPSGP	11	Unmodified	_DKKPPKTPSGP_					0	0	0		ENSG00000183638|ENST00000382483|RP1L1;nc|ENSG00000183638|Q8IWN7-2|RP1L1	ENSG00000183638|ENST00000382483|RP1L1	ENSG00000183638|ENST00000382483|RP1L1	MULTI-MSMS	A375_MHC_IP_R1	1	576.7245483398438	2	576.324588	1150.63462	-0.46208	-0.00026631	0.20225	0.00011656	-0.25984	-0.00014975	576.3246658096047	36.602	0.75946	36.602	36.236	36.996	0					25	14	3	0	0	0	0.45155	1	12294	12294		34.932	3.6637	1	3792900			6145	8513	4195	4241	5990	5990					0.06533086051786086
DKKQNVKYY	9	Unmodified	_DKKQNVKYY_					0	0	0		ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	MULTI-MSMS	A375_MHC_IP_R1	1	396.2803955078125	3	395.880267	1184.61897	-0.2052	-8.1236E-05	-0.65691	-0.00026006	-0.86212	-0.00034129	395.8803564208303	28.888	0.5576	28.888	28.592	29.149	0					26	10	4	0	0	0	0.69884	1	8973	8973		7.1017	2.0542	1	3164600			6146	1147	4196	4242	5991	5991					0.034047995347464166
DKKVKLIVLHW	11	Unmodified	_DKKVKLIVLHW_					0	0	0		ILDR1|p.E160K|1|0.43|ENSG00000145103|chr3:122001766-122001766|C/T|missense_variant	ILDR1|p.E160K|1|0.43|ENSG00000145103|chr3:122001766-122001766|C/T|missense_variant	ILDR1|p.E160K|1|0.43|ENSG00000145103|chr3:122001766-122001766|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	690.291748046875	2	689.932097	1377.84964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.99	1	119.99	119.49	120.49	0								0	0	0	0.16302	1	44411	44411		2.9952	0	1				6147	14160	4197	4243	5992	5992					0.175830525874062
DKLAKEEHN	9	Unmodified	_DKLAKEEHN_					0	0	0		ENSG00000139537|ENST00000320516|CCDC65;nc|ENSG00000139537|Q8IXS2-2|CCDC65	ENSG00000139537|ENST00000320516|CCDC65	ENSG00000139537|ENST00000320516|CCDC65	MULTI-SECPEP	A375_MHC_IP_R2	2	542.1973876953125	2	542.275095	1082.53564	-0.75935	-0.00041178	0.012705	6.8899E-06	-0.74665	-0.00040489	542.2745512368588	87.951	1.0643	88.683	88.266	89.331	0.7318					28	20	2	0	0	0	0.69507	1	33311	33311		9.3831	9.3831	1	3985200			6148	5085	4198	4244	5993	5993					-0.0023293691308481357
DKLCTNLCI	9	Unmodified	_DKLCTNLCI_					0	0	0		CRISP1|p.P210L|1|0.28|ENSG00000124812|chr6:49835437-49835437|G/A|missense_variant	CRISP1|p.P210L|1|0.28|ENSG00000124812|chr6:49835437-49835437|G/A|missense_variant	CRISP1|p.P210L|1|0.28|ENSG00000124812|chr6:49835437-49835437|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	511.55450439453125	2	511.754095	1021.49364	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.26	1	111	110.5	111.5	0.73692								0	0	0	0.1535	1	41597	41597		15.847	0.078963	1				6149	662	4199	4245	5994	5994					-0.016249519174948546
DKLDKELNY	9	Unmodified	_DKLDKELNY_					0	0	0			REV__ENSG00000167858|ENST00000338694|TEKT1	REV__ENSG00000167858|ENST00000338694|TEKT1	MULTI-SECPEP	A375_MHC_IP_R2	2	380.2682800292969	3	379.864394	1136.57135	-0.18079	-6.8677E-05	-0.21914	-8.3242E-05	-0.39993	-0.00015192	379.8643111854602	28.141	0.40594	28.82	28.604	29.01	0.67857					18	7	3	0	0	0	0.69179	1	9620	9620		8.4443	0	1	8115100	+		6150	20796	4200	4246	5995	5995					0.008531005438953798
DKLEWENVGY	10	Unmodified	_DKLEWENVGY_					0	0	0			REV__tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	REV__tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	627.2468872070312	2	626.79586	1251.57717	-0.35973	-0.00022548	-2.5978	-0.0016283	-2.9576	-0.0018538	627.7959753639516	92.402	0.86255	92.402	92.11	92.973	0					31	16	3	0	0	0	0.69306	1	33983	33983		13.906	0.86358	1	2985700	+		6151	28243	4201	4247	5996	5996					-0.0385580094443867
DKLIHINIH	9	Unmodified	_DKLIHINIH_					0	0	0			REV__ENSG00000175104|ENST00000526995|TRAF6	REV__ENSG00000175104|ENST00000526995|TRAF6	MULTI-SECPEP	A375_MHC_IP_R2	2	368.9049072265625	3	368.217102	1101.62948	-0.1215	-4.4738E-05	0.40459	0.00014898	0.28309	0.00010424	368.2172769737403	23.167	0.30612	23.798	23.572	23.878	0.63014					10	5	2	0	0	0	0.71541	1	7357	7357		2.2828	0	1	1002000	+		6152	21324	4202	4248	5997	5997					0.08272826979828096
DKLIKEGKY	9	Unmodified	_DKLIKEGKY_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5;NDUFS5|p.P94L|1|0.27|ENSG00000168653|chr1:39034456-39034456|C/T|missense_variant	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	A375_MHC_IP_R1	1	365.6290588378906	3	365.213246	1092.61791	-0.013111	-4.7884E-06	0.39036	0.00014257	0.37725	0.00013778	365.2132938307456	39.789	1.2201	39.789	39.592	40.813	0					40	23	4	0	0	0	0.51106	1	13719	13719		13.615	4.0709	1	10603000			6153	7330	4203	4249	5998	5998					0.0753058516584133
DKLISLIQ	8	Unmodified	_DKLISLIQ_					0	0	0		nc|ENSG00000033800|O75925-3|PIAS1;ENST00000564009.1_1_15:68445936-68446074:+|nuORF	nc|ENSG00000033800|O75925-3|PIAS1	nc|ENSG00000033800|O75925-3|PIAS1	MULTI-MSMS	A375_MHC_IP_R1	1	930.560302734375	1	929.566609	928.559333	0.20121	0.00018704	0.25824	0.00024005	0.45945	0.00042709	929.5666954520109	107.94	0.76154	107.94	107.65	108.41	0					36	14	3	0	0	0	0.7496	1	39715	39715		20.415	0	1	23882000			6154	14460	4204	4250	5999	5999					0.09219528591370363
DKLIVMTYL	9	Unmodified	_DKLIVMTYL_					0	0	0		ENSG00000173442|ENST00000309295|EHBP1L1	ENSG00000173442|ENST00000309295|EHBP1L1	ENSG00000173442|ENST00000309295|EHBP1L1	MULTI-SECPEP	A375_MHC_IP_R1	1	548.699462890625	2	548.309561	1094.60457	-0.57536	-0.00031547	0.48125	0.00026387	-0.094106	-5.1599E-05	548.8113171044378	77.222	0.50577	77.222	76.981	77.486	0					12	9	2	0	0	0	0.53748	1	28267	28267		18.146	18.146	1	1381200			6155	7797	4205	4251	6000	6000					0.06105011062254562
DKLKKANKK	9	Unmodified	_DKLKKANKK_					0	0	0		tr|U7SMT3|U7SMT3_FUSNUGlyceroluptakeoperonantiterminatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01812PE=4SV=1	tr|U7SMT3|U7SMT3_FUSNUGlyceroluptakeoperonantiterminatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01812PE=4SV=1	tr|U7SMT3|U7SMT3_FUSNUGlyceroluptakeoperonantiterminatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01812PE=4SV=1	MSMS	A375_MHC_IP_R2	2	358.2731628417969	3	358.232752	1071.67643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.695	1	23.325	22.825	23.825	0.63014								0	0	0	0.15486	1	7224	7224		3.3196	1.0369	1				6156	29534	4206	4252	6001	6001					0.14345686530964485
DKLKLRSRKFK	11	Unmodified	_DKLKLRSRKFK_					0	0	0			REV__nc|ENSG00000143674|Q5TCX8-2|MAP3K21	REV__nc|ENSG00000143674|Q5TCX8-2|MAP3K21	MSMS	A375_MHC_IP_R1	1	709.9490356445312	2	709.951353	1417.88815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.88	1	122.88	122.38	123.38	0								0	0	0	0.16339	1	45827	45827		1.0715	0	1		+		6157	19380	4207	4253	6002	6002					0.19592358221893846
DKLPHIFRFTL	11	Unmodified	_DKLPHIFRFTL_					0	0	0		nc|ENSG00000290796|A4QPB2-2|LRP5L;nc|ENSG00000290796|A4QPB2|LRP5L	nc|ENSG00000290796|A4QPB2-2|LRP5L	nc|ENSG00000290796|A4QPB2-2|LRP5L	MSMS	A375_MHC_IP_R2	2	693.8213500976562	2	693.898254	1385.78196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.16	1	117.82	117.32	118.32	0.65962								0	0	0	0.16176	1	44317	44317		9.544	0.79857	1				6158	14957	4208	4254	6003	6003					0.10449602656603929
DKLREFLRVEE	11	Unmodified	_DKLREFLRVEE_					0	0	0		ENSG00000104228|ENST00000305364|TRIM35	ENSG00000104228|ENST00000305364|TRIM35	ENSG00000104228|ENST00000305364|TRIM35	MSMS	A375_MHC_IP_R2	2	717.0328369140625	2	717.39099	1432.76743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.926	1	80.671	80.171	81.171	0.74474								0	0	0	0.16213	1	30341	30341		7.609	1.8771	1				6159	2492	4209	4255	6004	6004					0.06835485717806478
DKLRKTSRYLE	11	Unmodified	_DKLRKTSRYLE_					0	0	0			REV__nc|ENSG00000196862|Q7Z3J3-2|RGPD4	REV__nc|ENSG00000196862|Q7Z3J3-2|RGPD4	MULTI-SECPEP	A375_MHC_IP_R1	1	469.6355895996094	3	470.268414	1407.78341	-0.31185	-0.00014665	-0.17029	-8.008E-05	-0.48213	-0.00022673	470.26827766028146	20.244	0.5565	20.244	19.928	20.485	0					14	10	2	0	0	0	0.99581	1	5063	5063		1.9275	1.5192	1	1596800	+		6160	16249	4210	4256	6005	6005					0.09583191954698123
DKLRKTSRYV	10	Unmodified	_DKLRKTSRYV_					0	0	0			REV__ENSG00000153201|ENST00000283195|RANBP2	REV__ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	A375_MHC_IP_R1	1	633.7689819335938	2	633.369861	1264.72517	-0.88564	-0.00056094	-0.7849	-0.00049713	-1.6705	-0.0010581	633.3692105624137	130.95	6.5085	130.95	130.41	136.92	0					397	127	7	0	0	0	0.72358	1	52419	52419		0.35063	0	1	1441100000	+		6161	19831	4211	4257	6006	6006					0.1033955510006308
DKLRYKLLMRF	11	Unmodified	_DKLRYKLLMRF_					0	0	0			REV__LRRK2|p.K639Rfs*15|1|0.3|ENSG00000188906|chr12:40274967-40274967|A/-|frameshift_variant	REV__LRRK2|p.K639Rfs*15|1|0.3|ENSG00000188906|chr12:40274967-40274967|A/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	741.8407592773438	2	741.934314	1481.85407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.26	1	129.5	129	130	0.23946								0	0	0	0.16312	1	50799	50799		2.4985	1.169	1		+		6162	26958	4212	4258	6007	6007					0.13242193738642527
DKLSQQNKL	9	Unmodified	_DKLSQQNKL_					0	0	0		GPC6|p.S79N|1|0.25|ENSG00000183098|chr13:93545338-93545338|G/A|missense_variant	GPC6|p.S79N|1|0.25|ENSG00000183098|chr13:93545338-93545338|G/A|missense_variant	GPC6|p.S79N|1|0.25|ENSG00000183098|chr13:93545338-93545338|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	357.930908203125	3	358.536501	1072.58767	0.037062	1.3288E-05	0.91538	0.0003282	0.95244	0.00034148	358.53661385775104	52.464	0.15331	52.464	52.336	52.49	0					4	2	2	0	0	0	0.76827	1	18623	18623		4.1895	0	1	573050			6163	14060	4213	4259	6008	6008					0.05428226500657729
DKLWYVQPAPV	11	Unmodified	_DKLWYVQPAPV_					0	0	0			REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF	REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF	MSMS	A375_MHC_IP_R1	1	658.3707275390625	2	658.355888	1314.69722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.94	1	104.94	104.44	105.44	0								0	0	0	0.16203	1	38532	38532		8.1555	0.54658	1		+		6164	16475	4214	4260	6009	6009					0.0524623211999824
DKMKMSKLLPI	11	Unmodified	_DKMKMSKLLPI_					0	0	0			REV__ENST00000451005.5_2_2:229983-234184:-|nuORF	REV__ENST00000451005.5_2_2:229983-234184:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	652.7760620117188	2	652.377452	1302.74035	-0.74545	-0.00048632	-0.68722	-0.00044832	-1.4327	-0.00093464	652.3768244718657	142.13	1.0624	142.13	141.42	142.49	0					59	20	4	0	0	0	0.99791	1	54551	54551		2.4985	2.4985	1	9583100	+		6165	24420	4215	4261	6010	6010					0.10108962581443848
DKMKNPITRRW	11	Unmodified	_DKMKNPITRRW_					0	0	0		SH3BP4|p.K930R|1|0.2|ENSG00000130147|chr2:235053713-235053713|A/G|missense_variant	SH3BP4|p.K930R|1|0.2|ENSG00000130147|chr2:235053713-235053713|A/G|missense_variant	SH3BP4|p.K930R|1|0.2|ENSG00000130147|chr2:235053713-235053713|A/G|missense_variant	MSMS	A375_MHC_IP_R2	2	722.772216796875	2	722.89572	1443.77689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.85	1	102.62	102.12	103.12	0.76428								0	0	0	0.16265	1	38603	38603		4.897	1.9018	1				6166	29153	4216	4262	6011	6011					0.0727497552229579
DKMMNGSHYTY	11	Unmodified	_DKMMNGSHYTY_					0	0	0		ENST00000547655.1_1_12:49989013-49989364:+|nuORF	ENST00000547655.1_1_12:49989013-49989364:+|nuORF	ENST00000547655.1_1_12:49989013-49989364:+|nuORF	MSMS	A375_MHC_IP_R2	2	673.8715209960938	2	673.77883	1345.54311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.68	1	105.45	104.95	105.95	0.76308								0	0	0	0.16249	1	39603	39603		5.7319	0.43497	1				6167	13345	4217	4263	6012	6012					-0.11584288699327772
DKMVCYLLKTK	11	Unmodified	_DKMVCYLLKTK_					0	0	0		ENSG00000104147|ENST00000220514|OIP5	ENSG00000104147|ENST00000220514|OIP5	ENSG00000104147|ENST00000220514|OIP5	MSMS	A375_MHC_IP_R2	2	447.9276123046875	3	447.913815	1340.71961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.068	1	22.688	22.188	23.188	0.61932								0	0	0	0.16336	1	6989	6989		1.2148	0	1				6168	2488	4218	4264	6013	6013					0.06288372201720449
DKMVHMTTNGV	11	Unmodified	_DKMVHMTTNGV_					0	0	0			REV__ENSG00000075420|ENST00000415807|FNDC3B	REV__ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	A375_MHC_IP_R1	1	617.1931762695312	2	616.79174	1231.56893	-0.55024	-0.00033938	2.152	0.0013273	1.6017	0.00098792	616.7932734753349	85.793	0.65977	85.793	85.412	86.072	0					19	12	2	0	0	0	0.57844	1	31438	31438		24.991	0.97039	1	1881100	+		6169	16656	4219	4265	6014	6014					-0.037593944570517124
DKNIEIDSEF	10	Unmodified	_DKNIEIDSEF_					0	0	0		tr|U7STX9|U7STX9_FUSNUProbablenicotinate-nucleotideadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadDPE=3SV=1	tr|U7STX9|U7STX9_FUSNUProbablenicotinate-nucleotideadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadDPE=3SV=1	tr|U7STX9|U7STX9_FUSNUProbablenicotinate-nucleotideadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadDPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	604.7136840820312	2	605.285325	1208.5561	-0.46036	-0.00027865	-1.8182	-0.0011005	-2.2785	-0.0013792	605.2838689050675	65.52	0.61362	65.52	65.206	65.819	0					15	11	2	0	0	0	0.83355	1	23753	23753		17.113	0	1	1243600			6170	29723	4220	4266	6015	6015					-0.039838110439632146
DKNLLKNIPEK	11	Unmodified	_DKNLLKNIPEK_					0	0	0		ENSG00000240720|ENST00000458448|LRRD1	ENSG00000240720|ENST00000458448|LRRD1	ENSG00000240720|ENST00000458448|LRRD1	MULTI-SECPEP	A375_MHC_IP_R2	2	655.7821044921875	2	656.385177	1310.7558	-0.91315	-0.00059938	0.15759	0.00010344	-0.75556	-0.00049594	656.3853071791671	129.65	0.35297	129.87	129.69	130.05	0.2142					10	6	2	0	0	0	1.0001	1	50935	50935		0.20686	0	1	6379100			6171	9777	4221	4267	6016	6016					0.11285288694443807
DKNSPIVKY	9	Unmodified	_DKNSPIVKY_					0	0	0		nc|ENSG00000211819|A0A0B4J280|TRAV40	nc|ENSG00000211819|A0A0B4J280|TRAV40	nc|ENSG00000211819|A0A0B4J280|TRAV40	MULTI-SECPEP	A375_MHC_IP_R1	1	354.97186279296875	3	355.197596	1062.57096	-0.078716	-2.796E-05	-0.9638	-0.00034234	-1.0425	-0.0003703	355.19721818446965	34.397	0.65653	34.397	34.103	34.759	0					21	12	2	0	0	0	0.67483	1	11423	11423		10.151	0	1	1743300			6172	14888	4222	4268	6017	6017					0.04217725614716983
DKNSPIVKY	9	Unmodified	_DKNSPIVKY_					0	0	0		nc|ENSG00000211819|A0A0B4J280|TRAV40	nc|ENSG00000211819|A0A0B4J280|TRAV40	nc|ENSG00000211819|A0A0B4J280|TRAV40	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	355.197596	1062.57096	-0.67284	-0.00023899	-0.25008	-8.8826E-05	-0.92292	-0.00032782	355.5319231103288	33.52	0.70988	34.272	34.043	34.753	0.75225	-0.062492	0.00017827	NaN	10.151	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1985500			6173	14888	4222	4268							0.04217725614716983
DKNWSPNPV	9	Unmodified	_DKNWSPNPV_					0	0	0			REV__ENSG00000159445|ENST00000368814|THEM4	REV__ENSG00000159445|ENST00000368814|THEM4	MULTI-MSMS	A375_MHC_IP_R2	2	529.7053833007812	2	528.759081	1055.50361	-0.71754	-0.0003794	0.18052	9.5451E-05	-0.53702	-0.00028395	528.7582573664905	39.102	1.0716	39.877	39.401	40.473	0.77451					50	20	4	0	0	0	0.44024	1	14584	14584		22.736	5.794	1	18702000	+		6174	20120	4223	4269	6018	6018					-0.02192304596246686
DKNYDDYYPD	10	Unmodified	_DKNYDDYYPD_					0	0	0		CXADR|p.I79N|1|0.4|ENSG00000154639|chr21:17551774-17551774|T/A|missense_variant	CXADR|p.I79N|1|0.4|ENSG00000154639|chr21:17551774-17551774|T/A|missense_variant	CXADR|p.I79N|1|0.4|ENSG00000154639|chr21:17551774-17551774|T/A|missense_variant	MSMS	A375_MHC_IP_R1	1	654.2288818359375	2	654.256765	1306.49898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.009	1	93.009	92.509	93.509	0								0	0	0	0.15531	1	34185	34185		3.5965	0	1				6175	688	4224	4270	6019	6019					-0.1420127832034268
DKNYIAWEYD	10	Unmodified	_DKNYIAWEYD_					0	0	0		tr|U7T201|U7T201_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00705PE=4SV=1	tr|U7T201|U7T201_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00705PE=4SV=1	tr|U7T201|U7T201_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00705PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	439.6143493652344	3	439.531304	1315.57208	-0.11643	-5.1176E-05	0.68564	0.00030136	0.5692	0.00025018	439.86601919275853	19.954	0.40461	19.954	19.776	20.18	0					13	7	2	0	0	0	0.92227	1	4996	4996		11.518	7.9252	1	1601400			6176	29914	4225	4271	6020	6020					-0.07308104807043492
DKNYIAWEYD	10	Unmodified	_DKNYIAWEYD_					0	0	0		tr|U7T201|U7T201_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00705PE=4SV=1	tr|U7T201|U7T201_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00705PE=4SV=1	tr|U7T201|U7T201_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00705PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		3	439.531304	1315.57208	-0.6176	-0.00027146	0.52125	0.00022911	-0.096349	-4.2349E-05	439.5313133563424	19.666	0.45602	20.277	19.993	20.449	0.61029	0.16119	-8.6781E-05	NaN	7.9454	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	540160			6177	29914	4225	4271							-0.07308104807043492
DKPDDISTV	9	Unmodified	_DKPDDISTV_					0	0	0		LRRC3B|p.E251K|1|0.26|ENSG00000179796|chr3:26710423-26710423|G/A|missense_variant	LRRC3B|p.E251K|1|0.26|ENSG00000179796|chr3:26710423-26710423|G/A|missense_variant	LRRC3B|p.E251K|1|0.26|ENSG00000179796|chr3:26710423-26710423|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	495.64276123046875	2	495.242929	988.471305	-0.5011	-0.00024816	-0.14948	-7.4027E-05	-0.65057	-0.00032219	495.2427424573382	44.627	0.96722	45.396	44.782	45.75	0.7691					38	18	3	0	0	0	0.064406	1	16532	16532		58.679	6.4105	1	5154500			6178	14316	4226	4272	6021	6021					-0.02339136789908025
DKPKGAGA	8	Unmodified	_DKPKGAGA_					0	0	0		nc|ENSG00000115935|O43516-4|WIPF1;nc|ENSG00000115935|O43516-2|WIPF1;ENSG00000115935|ENST00000679041|WIPF1;nc|ENSG00000115935|O43516-3|WIPF1	nc|ENSG00000115935|O43516-4|WIPF1	nc|ENSG00000115935|O43516-4|WIPF1	MULTI-MSMS	A375_MHC_IP_R2	2	744.3362426757812	1	743.404629	742.397353	-0.65924	-0.00049008	1.3646	0.0010145	0.70538	0.00052438	743.4055490577687	143.33	0.20392	143.35	143.18	143.39	0.024414					5	3	2	0	0	0	0.77839	1	56012	56012		0.79363	0	1	1354000			6179	3351	4227	4273	6022	6022					0.015849846290961978
DKPLELKNSER	11	Unmodified	_DKPLELKNSER_					0	0	0		ZNF518B|p.Q694Rfs*78|1|0.18|ENSG00000178163|chr4:10444250-10444250|C/-|frameshift_variant;ENSG00000178163|ENST00000326756|ZNF518B	ZNF518B|p.Q694Rfs*78|1|0.18|ENSG00000178163|chr4:10444250-10444250|C/-|frameshift_variant	ZNF518B|p.Q694Rfs*78|1|0.18|ENSG00000178163|chr4:10444250-10444250|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	665.7603759765625	2	664.862066	1327.70958	-0.9547	-0.00063474	-1.4359	-0.00095468	-2.3906	-0.0015894	665.3617310208193	121.69	0.40544	121.69	121.52	121.92	0					12	7	2	0	0	0	0.64753	1	45298	45298		19.626	3.4768	1	35171000			6180	8139	4228	4274	6023	6023					0.0588322379235251
DKPLSDPAPF	10	Unmodified	_DKPLSDPAPF_					0	0	0		nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2	nc|ENSG00000101150|O43399-6|TPD52L2	nc|ENSG00000101150|O43399-6|TPD52L2	MULTI-SECPEP	A375_MHC_IP_R2	2	543.1507568359375	2	543.776939	1085.53933	-0.83009	-0.00045138	-0.029933	-1.6277E-05	-0.86002	-0.00046766	543.776977430104	64.898	0.55954	65.636	65.308	65.867	0.73811					29	10	4	0	0	0	0.37864	1	24575	24575		45.7	45.7	1	5863200			6181	2255	4229	4275	6024	6024					-2.2671392571282922E-05
DKQMTLMLL	9	Unmodified	_DKQMTLMLL_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	A375_MHC_IP_R2	2	364.6048889160156	3	364.864572	1091.57189	-0.28776	-0.000105	0.82431	0.00030076	0.53655	0.00019577	364.86479453483963	37.581	0.30766	38.352	38.171	38.479	0.7709					7	5	2	0	0	0	0.775	1	13740	13740		4.1895	1.4543	1	1148600			6182	3055	4230	4276	6025	6025					0.029764806677576416
DKQPLRPLVPD	11	Unmodified	_DKQPLRPLVPD_					0	0	0		nc|ENSG00000196923|Q9NR12-2|PDLIM7	nc|ENSG00000196923|Q9NR12-2|PDLIM7	nc|ENSG00000196923|Q9NR12-2|PDLIM7	MULTI-MSMS	A375_MHC_IP_R2	2	426.3066101074219	3	426.578588	1276.71394	-0.31027	-0.00013236	-0.31183	-0.00013302	-0.6221	-0.00026537	426.5783301517429	36.053	0.76363	36.817	36.486	37.25	0.76338					32	14	4	0	0	0	0.73111	1	13091	13091		7.846	0.80896	1	19375000			6183	14842	4231	4277	6026	6026					0.08664733005934977
DKQSQPIRQWR	11	Unmodified	_DKQSQPIRQWR_					0	0	0			REV__ENSG00000255009|ENST00000530464|UBTFL1;REV__nc|ENSG00000228970|P0CB48|UBTFL6	REV__nc|ENSG00000228970|P0CB48|UBTFL6	MULTI-MSMS	A375_MHC_IP_R1	1	721.7864990234375	2	721.386574	1440.75859	-0.64632	-0.00046625	-0.77918	-0.00056209	-1.4255	-0.0010283	721.3859672909151	58.684	1.1687	58.684	58.177	59.346	0					67	22	5	0	0	0	0.62223	1	21011	21011		21.59	5.441	1	59849000	+		6184	22869;27509	4232	4278	6027	6027					0.055845568719632865
DKQSQPIRQWR	11	Unmodified	_DKQSQPIRQWR_					0	0	0			REV__ENSG00000255009|ENST00000530464|UBTFL1;REV__nc|ENSG00000228970|P0CB48|UBTFL6	REV__nc|ENSG00000228970|P0CB48|UBTFL6	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	721.386574	1440.75859	-0.64632	-0.00046625	-0.77918	-0.00056209	-1.4255	-0.0010283	721.3859672909151	58.684	1.1687	58.684	58.177	59.346	0	0.014758	0.00030089	NaN	21.59	67	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59849000	+		6185	22869;27509	4232	4278							0.055845568719632865
DKQSQPIRQWR	11	Unmodified	_DKQSQPIRQWR_					0	0	0			REV__ENSG00000255009|ENST00000530464|UBTFL1;REV__nc|ENSG00000228970|P0CB48|UBTFL6	REV__nc|ENSG00000228970|P0CB48|UBTFL6	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	721.386574	1440.75859	-1.0461	-0.00075463	-1.1256	-0.00081201	-2.1717	-0.0015666	721.3857477166218	57.905	1.0161	58.654	58.17	59.187	0.74895	-0.014758	-0.00019894	NaN	21.59	63	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80562000	+		6186	22869;27509	4232	4278							0.055845568719632865
DKRFTSRKY	9	Unmodified	_DKRFTSRKY_					0	0	0		TRIOBP|p.G2319R|1|0.38|ENSG00000100106|chr22:37772619-37772619|G/A|missense_variant	TRIOBP|p.G2319R|1|0.38|ENSG00000100106|chr22:37772619-37772619|G/A|missense_variant	TRIOBP|p.G2319R|1|0.38|ENSG00000100106|chr22:37772619-37772619|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	401.60858154296875	3	400.887645	1199.64111	-0.18927	-7.5877E-05	0.35897	0.00014391	0.1697	6.8029E-05	400.8876768702044	20.401	0.45791	20.401	20.18	20.638	0					12	8	2	0	0	0	0.76187	1	5203	5203		4.5289	2.0941	1	1512900			6187	30076	4233	4279	6028	6028					0.04927024003177394
DKRGRATKF	9	Unmodified	_DKRGRATKF_					0	0	0		ENST00000564697.1_1_6:164506107-164506446:-|nuORF	ENST00000564697.1_1_6:164506107-164506446:-|nuORF	ENST00000564697.1_1_6:164506107-164506446:-|nuORF	MSMS	A375_MHC_IP_R2	2	360.2063293457031	3	360.208718	1077.60433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.496	1	40.271	39.771	40.771	0.77451								0	0	0	0.15486	1	14586	14586		4.1895	0	1				6188	13539	4234	4280	6029	6029					0.0686277217728275
DKRHHVKEKRS	11	Unmodified	_DKRHHVKEKRS_					0	0	0			REV__ENST00000598846.1_1_1:1636463-1654047:-|nuORF	REV__ENST00000598846.1_1_1:1636463-1654047:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	474.6629943847656	3	473.935769	1418.78548	-0.71466	-0.0003387	-0.50712	-0.00024034	-1.2218	-0.00057904	473.9353734741977	132.12	1.0602	132.12	131.48	132.54	0					50	20	3	0	0	0	0.73078	1	50800	50800		6.6235	6.6235	1	16684000	+		6189	16166	4235	4281	6030	6030					0.0928366548316717
DKRHHVKEKRS	11	Unmodified	_DKRHHVKEKRS_					0	0	0			REV__ENST00000598846.1_1_1:1636463-1654047:-|nuORF	REV__ENST00000598846.1_1_1:1636463-1654047:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	474.33538818359375	3	473.935769	1418.78548	-0.71466	-0.0003387	-0.50712	-0.00024034	-1.2218	-0.00057904	473.9353734741977	132.12	1.0602	132.12	131.48	132.54	0					50	20	3	0	0	0	0.99424	1	50785	50785		6.6235	6.6235	1	16684000	+		6190	16166	4235	4281	6031	6031					0.0928366548316717
DKRHHVKEKRS	11	Unmodified	_DKRHHVKEKRS_					0	0	0			REV__ENST00000598846.1_1_1:1636463-1654047:-|nuORF	REV__ENST00000598846.1_1_1:1636463-1654047:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	474.66326904296875	3	473.935769	1418.78548	-0.52277	-0.00024776	-0.45676	-0.00021648	-0.97953	-0.00046424	473.9353544820117	131.98	1.3219	132.17	131.29	132.61	0.18953					70	25	4	0	0	0	0.73078	1	51741	51741		6.6235	0.3891	1	25036000	+		6191	16166	4235	4281	6032	6032					0.0928366548316717
DKRHHVKEKRS	11	Unmodified	_DKRHHVKEKRS_					0	0	0			REV__ENST00000598846.1_1_1:1636463-1654047:-|nuORF	REV__ENST00000598846.1_1_1:1636463-1654047:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	474.3351745605469	3	473.935769	1418.78548	-0.52277	-0.00024776	-0.45676	-0.00021648	-0.97953	-0.00046424	473.9353544820117	131.98	1.3219	132.17	131.29	132.61	0.18953					70	25	4	0	0	0	0.99424	1	51768	51768		6.6235	0.3891	1	25036000	+		6192	16166	4235	4281	6033	6033					0.0928366548316717
DKRIQQKIKRF	11	Unmodified	_DKRIQQKIKRF_					0	0	0		CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7;nc|ENSG00000171316|Q9P2D1-2|CHD7;ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9	CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant;ENSG00000177200|ENST00000447540|CHD9	ENSG00000177200|ENST00000447540|CHD9	MSMS	A375_MHC_IP_R2	2	730.443359375	2	730.446434	1458.87832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.84	1	120.37	119.87	120.87	0.5321								0	0	0	0.16258	1	45672	45672		5.2969	2.0156	1				6193	8069;387	4236	4282	6034	6034					0.16723170216505423
DKRISGFKF	9	Unmodified	_DKRISGFKF_					0	0	0		LOXL2|p.P164S|1|0.48|ENSG00000134013|chr8:23360131-23360131|G/A|missense_variant	LOXL2|p.P164S|1|0.48|ENSG00000134013|chr8:23360131-23360131|G/A|missense_variant	LOXL2|p.P164S|1|0.48|ENSG00000134013|chr8:23360131-23360131|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	366.9268493652344	3	366.541586	1096.60293	0.27281	9.9998E-05	-0.28311	-0.00010377	-0.010291	-3.7721E-06	366.54139036049634	25.227	0.61074	25.227	25.053	25.664	0					31	11	5	0	0	0	0.59859	1	7478	7478		14.957	4.8066	1	29572000			6194	14311	4237	4283	6035	6035					0.058491380885243416
DKRISGFKF	9	Unmodified	_DKRISGFKF_					0	0	0		LOXL2|p.P164S|1|0.48|ENSG00000134013|chr8:23360131-23360131|G/A|missense_variant	LOXL2|p.P164S|1|0.48|ENSG00000134013|chr8:23360131-23360131|G/A|missense_variant	LOXL2|p.P164S|1|0.48|ENSG00000134013|chr8:23360131-23360131|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	366.926513671875	3	366.541586	1096.60293	-0.21902	-8.028E-05	-0.13783	-5.052E-05	-0.35685	-0.0001308	366.54144501653417	24.492	0.66082	25.136	24.958	25.619	0.64368					23	12	4	0	0	0	0.39657	1	8263	8263		24.882	6.5085	1	21641000			6195	14311	4237	4283	6036	6036					0.058491380885243416
DKRKEKRKQKQ	11	Unmodified	_DKRKEKRKQKQ_					0	0	0		ENSG00000112290|ENST00000392589|WASF1	ENSG00000112290|ENST00000392589|WASF1	ENSG00000112290|ENST00000392589|WASF1	MULTI-SECPEP	A375_MHC_IP_R1	1	735.8421020507812	2	736.444423	1470.87429	-0.89656	-0.00066027	2.0788	0.0015309	1.1822	0.00087065	736.4458941175567	142.45	0.70891	142.45	141.93	142.64	0					26	13	3	0	0	0	1.0014	1	54641	54641		0.35063	0.043601	1	2614200			6196	3068	4238	4284	6037	6037					0.15769080722839135
DKRKELRKQQ	10	Unmodified	_DKRKELRKQQ_					0	0	0			REV__ENSG00000197816|ENST00000529487|CCDC180	REV__ENSG00000197816|ENST00000529487|CCDC180	MSMS	A375_MHC_IP_R2	2	664.9754638671875	2	664.891492	1327.76843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.57	1	103.34	102.84	103.84	0.76428								0	0	0	0.15541	1	38862	38862		3.2813	0.28607	1		+		6197	22318	4239	4285	6038	6038					0.11765744877357065
DKRLKKVWKPQ	11	Unmodified	_DKRLKKVWKPQ_					0	0	0		ENST00000461550.5_1_16:418974-420218:-|nuORF	ENST00000461550.5_1_16:418974-420218:-|nuORF	ENST00000461550.5_1_16:418974-420218:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	713.837890625	2	713.438078	1424.8616	-0.71514	-0.00051021	-0.32949	-0.00023507	-1.0446	-0.00074528	713.4378669877676	83.393	0.81544	84.133	83.848	84.663	0.73962					45	15	4	0	0	0	1.0001	1	31657	31657		0.96228	0.96228	1	25471000			6198	12188	4240	4286	6039	6039					0.1661666933057404
DKRPPLRKW	9	Unmodified	_DKRPPLRKW_					0	0	0		ENSG00000146409|ENST00000275227|SLC18B1	ENSG00000146409|ENST00000275227|SLC18B1	ENSG00000146409|ENST00000275227|SLC18B1	MULTI-SECPEP	A375_MHC_IP_R1	1	598.2569580078125	2	598.356557	1194.69856	0.056264	3.3666E-05	1.5504	0.00092769	1.6067	0.00096136	598.3574587391656	126.85	0.30331	126.85	126.71	127.01	0					12	5	3	0	0	0	0.78348	1	48529	48529		0.45834	0.057624	1	7816700			6199	5620	4241	4287	6040	6040					0.10899910999410167
DKRPVKDWW	9	Unmodified	_DKRPVKDWW_					0	0	0			REV__POTEC|p.G150D|1|0.72|ENSG00000183206|chr18:14542698-14542698|C/T|missense_variant	REV__POTEC|p.G150D|1|0.72|ENSG00000183206|chr18:14542698-14542698|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	411.15533447265625	3	410.552374	1228.63529	-0.042361	-1.7391E-05	-0.41855	-0.00017184	-0.46091	-0.00018923	410.55222903799915	32.618	0.55998	33.355	33.162	33.722	0.73692					24	10	3	0	0	0	0.65721	1	11636	11636		7.1017	0.47827	1	2370400	+		6200	27822	4242	4288	6041	6041					0.030119254915007332
DKRPVKDWW	9	Unmodified	_DKRPVKDWW_					0	0	0			REV__POTEC|p.G150D|1|0.72|ENSG00000183206|chr18:14542698-14542698|C/T|missense_variant	REV__POTEC|p.G150D|1|0.72|ENSG00000183206|chr18:14542698-14542698|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	410.552374	1228.63529	-0.042361	-1.7391E-05	-0.41855	-0.00017184	-0.46091	-0.00018923	410.55222903799915	32.618	0.55998	33.355	33.162	33.722	0.73692	-0.18397	-0.00016608	NaN	7.1017	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2370400	+		6201	27822	4242	4288							0.030119254915007332
DKRVILRRAE	10	Unmodified	_DKRVILRRAE_					0	0	0			REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	628.782470703125	2	628.383303	1254.75205	-0.66471	-0.00041769	-1.2111	-0.00076105	-1.8758	-0.0011787	628.3824409231725	129.07	1.1705	129.07	128.43	129.6	0					58	22	3	0	0	0	0.71466	1	49503	49503		5.7319	0	1	27505000	+		6202	15465	4243	4289	6042	6042					0.1348666371127365
DKRVILRRAE	10	Unmodified	_DKRVILRRAE_					0	0	0			REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	628.383303	1254.75205	-0.88078	-0.00055347	-0.9924	-0.00062361	-1.8732	-0.0011771	628.3825616919589	128.69	1.6744	128.93	127.99	129.67	0.23947	-0.074347	7.9781E-05	NaN	5.7319	70	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31986000	+		6203	15465	4243	4289							0.1348666371127365
DKRVLALEI	9	Unmodified	_DKRVLALEI_					0	0	0		ENSG00000186767|ENST00000374884|SPIN4	ENSG00000186767|ENST00000374884|SPIN4	ENSG00000186767|ENST00000374884|SPIN4	MULTI-SECPEP	A375_MHC_IP_R2	2	352.2742004394531	3	352.885241	1055.63389	-0.54206	-0.00019128	-0.51102	-0.00018033	-1.0531	-0.00037162	352.8849912995791	58.35	0.40876	59.099	58.98	59.389	0.74894					10	7	2	0	0	0	0.69507	1	22140	22140		6.1918	0	1	607550			6204	8774	4244	4290	6043	6043					0.10830291402749026
DKRWGLEAM	9	Unmodified	_DKRWGLEAM_					0	0	0			REV__ENSG00000108784|ENST00000225927|NAGLU	REV__ENSG00000108784|ENST00000225927|NAGLU	MULTI-MSMS	A375_MHC_IP_R2	2	553.7050170898438	2	553.276583	1104.53861	-1.1553	-0.00063922	1.5411	0.00085267	0.38579	0.00021345	553.2793285939081	58.932	1.5724	59.679	58.827	60.4	0.74714					67	30	4	0	0	0	0.2002	1	22103	22103		37.974	7.3375	1	2734600	+		6205	17553	4245	4291	6044	6044					-0.009473850599533762
DKSFLSNIKR	10	Unmodified	_DKSFLSNIKR_					0	0	0			REV__LGI1|p.S215F|1|0.91|ENSG00000108231|chr10:93792883-93792883|C/T|missense_variant	REV__LGI1|p.S215F|1|0.91|ENSG00000108231|chr10:93792883-93792883|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	604.3419189453125	2	604.343312	1206.67207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.14	1	123.14	122.64	123.64	0								0	0	0	0.1524	1	45970	45970		13.042	3.4985	1		+		6206	26925	4246	4292	6045	6045					0.0770017731738335
DKSIRFRPT	9	Unmodified	_DKSIRFRPT_					0	0	0		ENST00000566590.5_1_16:8807641-8875284:+|nuORF;ENSG00000183044|ENST00000268251|ABAT;ENST00000569156.5_1_16:8875152-8875284:+|nuORF	ENST00000566590.5_1_16:8807641-8875284:+|nuORF	ENST00000566590.5_1_16:8807641-8875284:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	374.2644348144531	3	373.88049	1118.61964	0.13691	5.1188E-05	-0.77593	-0.00029011	-0.63902	-0.00023892	373.880102305483	38.084	0.36108	38.858	38.585	38.946	0.77451					9	6	2	0	0	0	0.62591	1	14022	14022		13.615	2.7159	1	1589500			6207	8460	4247	4293	6046	6046					0.06507638974449037
DKSIYFRTAQK	11	Unmodified	_DKSIYFRTAQK_					0	0	0		nc|ENSG00000137802|O60336-2|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;nc|ENSG00000137802|O60336-4|MAPKBP1	nc|ENSG00000137802|O60336-2|MAPKBP1	nc|ENSG00000137802|O60336-2|MAPKBP1	MSMS	A375_MHC_IP_R1	1	678.869384765625	2	678.867151	1355.71975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.72	1	121.72	121.22	122.22	0								0	0	0	0.1534	1	45228	45228		18.373	3.1246	1				6208	4914	4248	4294	6047	6047					0.05611831517626342
DKSLFRCDL	9	Unmodified	_DKSLFRCDL_					0	0	0			REV__ENSG00000214021|ENST00000685419|TTLL3	REV__ENSG00000214021|ENST00000685419|TTLL3	MULTI-MSMS	A375_MHC_IP_R2	2	548.5848388671875	2	548.776416	1095.53828	-0.67184	-0.00036869	-2.0664	-0.001134	-2.7383	-0.0015027	548.7757533781427	68.36	0.25359	69.095	68.918	69.171	0.73511					6	4	2	0	0	0	0.6324	1	25846	25846		13.042	0.51092	1	699360	+		6209	22641	4249	4295	6048	6048					-0.0056680477980535215
DKSLRRIAELR	11	Unmodified	_DKSLRRIAELR_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4;GOLGA4|p.E834Kfs*10|1|0.21|ENSG00000144674|chr3:37324385-37324386|AG/-|frameshift_variant	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MSMS	A375_MHC_IP_R1	1	679.1549682617188	2	678.907142	1355.79973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.38	1	120.38	119.88	120.88	0								0	0	0	0.16152	1	44591	44591		10.8	2.0541	1				6210	5505	4250	4296	6049	6049					0.1360631791144442
DKSREHRRG	9	Unmodified	_DKSREHRRG_					0	0	0		nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MULTI-MSMS	A375_MHC_IP_R2	2	380.9364318847656	3	380.870877	1139.5908	0.013704	5.2196E-06	-0.45929	-0.00017493	-0.44559	-0.00016971	380.8707166469207	27.273	0.56264	27.951	27.536	28.098	0.67857					13	10	2	0	0	0	0.70902	1	9316	9316		6.1918	6.1918	1	3373800			6211	14477	4251	4297	6050	6050					0.026589143980345398
DKSRFLDWFSY	11	Unmodified	_DKSRFLDWFSY_					0	0	0			REV__SLC2A12|p.L460Ffs*46|1|0.27|ENSG00000146411|chr6:134028445-134028446|-/A|frameshift_variant	REV__SLC2A12|p.L460Ffs*46|1|0.27|ENSG00000146411|chr6:134028445-134028446|-/A|frameshift_variant	MSMS	A375_MHC_IP_R2	2	488.468994140625	3	488.569981	1462.68811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.269	1	45.038	44.538	45.538	0.7691								0	0	0	0.16182	1	16519	16519		9.2438	3.7205	1		+		6212	19534	4252	4298	6051	6051					-0.024721612363237
DKSTYFGQDQ	10	Unmodified	_DKSTYFGQDQ_					0	0	0			REV__ENSG00000188641|ENST00000370192|DPYD	REV__ENSG00000188641|ENST00000370192|DPYD	MULTI-SECPEP	A375_MHC_IP_R1	1	396.2654113769531	3	396.84377	1187.50948	-0.32022	-0.00012708	0.59515	0.00023618	0.27493	0.0001091	396.84380408246767	24.017	0.75996	24.017	23.787	24.547	0					24	14	2	0	0	0	0.81532	1	6737	6737		9.2438	4.5279	1	16794000	+		6213	22104	4253	4299	6052	6052					-0.07677250875212849
DKSTYFGQDQ	10	Unmodified	_DKSTYFGQDQ_					0	0	0			REV__ENSG00000188641|ENST00000370192|DPYD	REV__ENSG00000188641|ENST00000370192|DPYD	MULTI-SECPEP	A375_MHC_IP_R2	2	396.26519775390625	3	396.84377	1187.50948	-0.41075	-0.000163	1.247	0.00049488	0.8363	0.00033188	396.8437942621433	23.43	0.60804	24.061	23.675	24.283	0.63014					19	11	3	0	0	0	0.81532	1	7494	7494		9.2438	3.8411	1	12271000	+		6214	22104	4253	4299	6053	6053					-0.07677250875212849
DKSVKVNYP	9	Unmodified	_DKSVKVNYP_					0	0	0			REV__tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	REV__tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	524.6771240234375	2	525.284931	1048.55531	-0.081768	-4.2952E-05	-0.69272	-0.00036388	-0.77449	-0.00040683	525.2845645152894	69.169	0.60907	69.169	68.92	69.529	0					23	11	3	0	0	0	0.50892	1	25149	25149		19.362	0	1	5730000	+		6215	28243	4254	4300	6054	6054					0.032974390976505674
DKSVKVNYP	9	Unmodified	_DKSVKVNYP_					0	0	0			REV__tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	REV__tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	525.284931	1048.55531	-0.37585	-0.00019743	-0.74335	-0.00039047	-1.1192	-0.0005879	525.2844756786781	68.361	0.76091	69.097	68.714	69.474	0.73511	-0.036361	-2.8516E-05	NaN	19.362	26	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6396200	+		6216	28243	4254	4300							0.032974390976505674
DKSWRIFPDPF	11	Unmodified	_DKSWRIFPDPF_					0	0	0			REV__nc|ENSG00000286095|A0A087WV53|SPEGNB	REV__nc|ENSG00000286095|A0A087WV53|SPEGNB	MSMS	A375_MHC_IP_R1	1	704.6590576171875	2	704.356419	1406.69829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.84	1	116.84	116.34	117.34	0								0	0	0	0.16213	1	42869	42869		7.609	0	1		+		6217	27554	4255	4301	6055	6055					0.011204464888805887
DKSYGLREL	9	Unmodified	_DKSYGLREL_					0	0	0			REV__LRIT1|p.E581K|1|0.42|ENSG00000148602|chr10:84232058-84232058|C/T|missense_variant	REV__LRIT1|p.E581K|1|0.42|ENSG00000148602|chr10:84232058-84232058|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	540.63720703125	2	540.787838	1079.56112	-0.54623	-0.00029539	-0.098238	-5.3126E-05	-0.64446	-0.00034852	540.787866428969	47.601	0.60543	47.601	47.315	47.92	0					19	11	2	0	0	0	0.61452	1	16654	16654		20.415	5.5763	1	3322100	+		6218	26944	4256	4302	6056	6056					0.024525376093379236
DKTEEKDMKGD	11	Unmodified	_DKTEEKDMKGD_					0	0	0			REV__nc|ENSG00000128595|O43852-15|CALU	REV__nc|ENSG00000128595|O43852-15|CALU	MSMS	A375_MHC_IP_R1	1	432.68109130859375	3	432.530975	1294.5711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.33	1	77.33	76.83	77.83	0								0	0	0	0.16265	1	28209	28209		2.2527	0.34635	1		+		6219	18458	4257	4303	6057	6057					-0.06440687238273313
DKTFKKTLYN	10	Unmodified	_DKTFKKTLYN_					0	0	0		ENSG00000171657|ENST00000302548|GPR82	ENSG00000171657|ENST00000302548|GPR82	ENSG00000171657|ENST00000302548|GPR82	MSMS	A375_MHC_IP_R2	2	419.9155578613281	3	419.899439	1256.67649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.899	1	42.673	42.173	43.173	0.77451								0	0	0	0.15306	1	15569	15569		10.899	2.4547	1				6220	7625	4258	4304	6058	6058					0.058416417403577725
DKTGILDFAKF	11	Unmodified	_DKTGILDFAKF_					0	0	0		tr|U7SU44|U7SU44_FUSNUBifunctionalpurinebiosynthesisproteinPurHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purHPE=3SV=1	tr|U7SU44|U7SU44_FUSNUBifunctionalpurinebiosynthesisproteinPurHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purHPE=3SV=1	tr|U7SU44|U7SU44_FUSNUBifunctionalpurinebiosynthesisproteinPurHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purHPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	419.2957763671875	3	418.895806	1253.66559	0.15268	6.3959E-05	0.57137	0.00023935	0.72406	0.0003033	418.8960211702191	63.806	0.66342	63.806	63.477	64.141	0					24	12	3	0	0	0	0.99332	1	23069	23069		7.846	7.577	1	4581400			6221	29737	4259	4305	6059	6059					0.04890239366022797
DKTHLVASV	9	Unmodified	_DKTHLVASV_					0	0	0			REV__nc|ENSG00000104299|Q9NV88-3|INTS9	REV__nc|ENSG00000104299|Q9NV88-3|INTS9	MULTI-SECPEP	A375_MHC_IP_R2	2	485.6607360839844	2	485.271824	968.529095	-0.61071	-0.00029636	0.01429	6.9343E-06	-0.59642	-0.00028943	485.2719000184352	62.942	1.3166	63.685	62.622	63.938	0.74263					31	25	2	0	0	0	0.65246	1	23819	23819		21.747	6.9084	1	1016400	+		6222	17312	4260	4306	6060	6060					0.043571699261860886
DKTILYSVATT	11	Unmodified	_DKTILYSVATT_					0	0	0		nc|ENSG00000141161|Q8IWX7-2|UNC45B;ENSG00000141161|ENST00000394570|UNC45B;nc|ENSG00000141161|Q8IWX7|UNC45B	nc|ENSG00000141161|Q8IWX7-2|UNC45B	nc|ENSG00000141161|Q8IWX7-2|UNC45B	MULTI-MSMS	A375_MHC_IP_R2	2	404.95526123046875	3	404.555449	1210.64452	-0.16403	-6.636E-05	-0.93576	-0.00037857	-1.0998	-0.00044492	404.55543563288336	35.755	0.50819	36.519	36.233	36.741	0.76338					22	9	3	0	0	0	0.70017	1	13000	13000		15.538	5.011	1	2221900			6223	5218	4261	4307	6061	6061					0.0476222926652099
DKTILYSVATT	11	Unmodified	_DKTILYSVATT_					0	0	0		nc|ENSG00000141161|Q8IWX7-2|UNC45B;ENSG00000141161|ENST00000394570|UNC45B;nc|ENSG00000141161|Q8IWX7|UNC45B	nc|ENSG00000141161|Q8IWX7-2|UNC45B	nc|ENSG00000141161|Q8IWX7-2|UNC45B	MULTI-MATCH	A375_MHC_IP_R1	1		3	404.555449	1210.64452	-0.72352	-0.0002927	-0.5494	-0.00022226	-1.2729	-0.00051497	404.88935797899126	36.691	0.70672	36.691	36.339	37.045	0	0.086226	0.00023238	NaN	15.538	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1802000			6224	5218	4261	4307							0.0476222926652099
DKTKPIKGRK	10	Unmodified	_DKTKPIKGRK_					0	0	0			REV__ENST00000495418.5_1_3:111842304-111846933:-|nuORF	REV__ENST00000495418.5_1_3:111842304-111846933:-|nuORF	MSMS	A375_MHC_IP_R2	2	390.9486083984375	3	390.915423	1169.72444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.712	1	40.487	39.987	40.987	0.77451								0	0	0	0.15554	1	14675	14675		2.8433	1.101	1		+		6225	25447	4262	4308	6062	6062					0.14636760451003283
DKTRKVFY	8	Unmodified	_DKTRKVFY_					0	0	0			REV__nc|ENSG00000083223|Q5VYS8-6|TUT7	REV__nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-SECPEP	A375_MHC_IP_R1	1	529.1953125	2	528.795466	1055.57638	-0.57995	-0.00030667	0.15086	7.9774E-05	-0.42909	-0.0002269	528.7953703034418	33.296	0.355	33.296	33.09	33.445	0					11	6	2	0	0	0	0.97021	1	10881	10881		10.824	6.0679	1	3202200	+		6226	16801	4263	4309	6063	6063					0.0508144919717779
DKVLCWAF	8	Unmodified	_DKVLCWAF_					0	0	0			REV__ENST00000589123.5_2_19:3464632-3465073:+|nuORF	REV__ENST00000589123.5_2_19:3464632-3465073:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	491.19219970703125	2	491.246763	980.478974	-0.45136	-0.00022173	-1.821	-0.00089458	-2.2724	-0.0011163	491.24579640606424	46.76	0.9693	46.76	46.345	47.315	0					25	18	2	0	0	0	0.75389	1	16303	16303		19.257	5.7491	1	3296100	+		6227	26418	4264	4310	6064	6064					-0.012046560033240894
DKVRKKMKKK	10	Unmodified	_DKVRKKMKKK_					0	0	0			REV__ENSG00000124201|ENST00000396105|ZNFX1	REV__ENSG00000124201|ENST00000396105|ZNFX1	MSMS	A375_MHC_IP_R1	1	430.3088073730469	3	430.279708	1287.8173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.54	1	132.54	132.04	133.04	0								0	0	0	0.15596	1	51109	51109		0.62683	0.12087	1		+		6228	18282	4265	4311	6065	6065					0.18489941912753238
DKVVKYDCLY	10	Unmodified	_DKVVKYDCLY_					0	0	0			REV__nc|ENSG00000152455|Q9H5I1-3|SUV39H2	REV__nc|ENSG00000152455|Q9H5I1-3|SUV39H2	MSMS	A375_MHC_IP_R2	2	623.2576904296875	2	623.312832	1244.61111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.61	1	110.36	109.86	110.86	0.74684								0	0	0	0.15382	1	41361	41361		13.906	7.1829	1		+		6229	19805	4266	4312	6066	6066					-0.0014109577703038667
DKWPHDMRNH	10	Unmodified	_DKWPHDMRNH_					0	0	0		nc|ENSG00000290757|Q5NE16|CTSL3P	nc|ENSG00000290757|Q5NE16|CTSL3P	nc|ENSG00000290757|Q5NE16|CTSL3P	MSMS	A375_MHC_IP_R1	1	668.302734375	2	668.304195	1334.59384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.7	1	120.7	120.2	121.2	0								0	0	0	0.15435	1	44740	44740		6.7232	0	1				6230	14956	4267	4313	6067	6067					-0.060075785394474224
DKYFLRCKKRK	11	Unmodified	_DKYFLRCKKRK_					0	0	0			REV__ENST00000396597.7_1_11:9501061-9516223:+|nuORF	REV__ENST00000396597.7_1_11:9501061-9516223:+|nuORF	MSMS	A375_MHC_IP_R2	2	743.0571899414062	2	742.929563	1483.84457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.16	1	125.46	124.96	125.96	0.2951								0	0	0	0.16258	1	48671	48671		5.2969	0	1		+		6231	24342	4268	4314	6068	6068					0.1220042545310207
DKYIPSKLY	9	Unmodified	_DKYIPSKLY_					0	0	0			REV__nc|ENSG00000108370|O75916-4|RGS9	REV__nc|ENSG00000108370|O75916-4|RGS9	MULTI-MSMS	A375_MHC_IP_R2	2	376.6094665527344	3	376.209613	1125.60701	-0.046785	-1.7601E-05	0.22916	8.6213E-05	0.18238	6.8613E-05	376.2097232641407	51.874	0.50961	52.627	52.27	52.78	0.75225					18	9	3	0	0	0	0.67332	1	19537	19537		6.1918	1.4759	1	1624400	+		6232	17525	4269	4315	6069	6069					0.04923182791549152
DKYIPSKLY	9	Unmodified	_DKYIPSKLY_					0	0	0			REV__nc|ENSG00000108370|O75916-4|RGS9	REV__nc|ENSG00000108370|O75916-4|RGS9	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	376.209613	1125.60701	0.23373	8.7931E-05	-0.00032693	-1.2299E-07	0.2334	8.7808E-05	376.20965728703294	52.566	0.40844	52.566	52.438	52.847	0	-0.030137	-7.992E-05	NaN	6.1918	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1650900	+		6233	17525	4269	4315							0.04923182791549152
DKYIPSKLY	9	Unmodified	_DKYIPSKLY_					0	0	0			REV__nc|ENSG00000108370|O75916-4|RGS9	REV__nc|ENSG00000108370|O75916-4|RGS9	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	376.209613	1125.60701	-0.046785	-1.7601E-05	0.22916	8.6213E-05	0.18238	6.8613E-05	376.2097232641407	51.874	0.50961	52.627	52.27	52.78	0.75225	0.030137	0.00017909	NaN	6.1918	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1624400	+		6234	17525	4269	4315							0.04923182791549152
DKYLYLSHGRL	11	Unmodified	_DKYLYLSHGRL_					0	0	0			REV__ENST00000401578.2_1_6:80776237-80776996:-|nuORF	REV__ENST00000401578.2_1_6:80776237-80776996:-|nuORF	MSMS	A375_MHC_IP_R2	2	682.5947875976562	2	682.869694	1363.72483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.32	1	119.85	119.35	120.35	0.5321								0	0	0	0.16209	1	45443	45443		9.544	1.935	1		+		6235	17502	4270	4316	6070	6070					0.05752135380203072
DKYNLKKFY	9	Unmodified	_DKYNLKKFY_					0	0	0			REV__ENST00000519149.1_1_5:169714972-169724783:-|nuORF	REV__ENST00000519149.1_1_5:169714972-169724783:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	406.9677734375	3	406.888763	1217.64446	-0.36767	-0.0001496	-0.33442	-0.00013607	-0.70208	-0.00028567	406.8886309252729	32.2	0.35904	32.2	32.024	32.383	0					12	6	3	0	0	0	0.65246	1	10331	10331		15.248	5.0979	1	1869500	+		6236	25681	4271	4317	6071	6071					0.044342740571892136
DKYPKDILTY	10	Unmodified	_DKYPKDILTY_					0	0	0		nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB;nc|ENSG00000076555|O00763-3|ACACB	nc|ENSG00000076555|O00763-2|ACACB	nc|ENSG00000076555|O00763-2|ACACB	MULTI-SECPEP	A375_MHC_IP_R2	2	628.1151123046875	2	628.332079	1254.6496	-0.75477	-0.00047425	-2.3039	-0.0014476	-3.0586	-0.0019218	628.833199257957	88.496	0.15131	89.227	89.128	89.279	0.7318					4	2	2	0	0	0	0.91556	1	33660	33660		6.2058	0	1	501880			6237	1636	4272	4318	6072	6072					0.032465331291405164
DLACSLLWNL	10	Unmodified	_DLACSLLWNL_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	MULTI-SECPEP	A375_MHC_IP_R2	2	383.9184875488281	3	383.19872	1146.57433	-0.078818	-3.0203E-05	3.6916	0.0014146	3.6128	0.0013844	383.1996996916613	48.397	0.30217	49.155	48.98	49.282	0.75737					6	5	2	0	0	0	0.91909	1	18211	18211		5.4027	4.4404	1	596750			6238	1535	4273	4319	6073	6073					0.006906523970656053
DLADSFDEPLD	11	Unmodified	_DLADSFDEPLD_					0	0	0			REV__ENSG00000137628|ENST00000393743|DDX60	REV__ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	A375_MHC_IP_R2	2	619.1661376953125	2	618.766965	1235.51938	-0.96852	-0.00059929	0.57101	0.00035332	-0.39751	-0.00024596	618.7672427945816	49.46	0.863	50.218	49.894	50.757	0.75737					36	16	3	0	0	0	0.98748	1	18556	18556		8.7454	0	1	10426000	+		6239	19020	4274	4320	6074	6074					-0.08896107660507369
DLAECCRAF	9	Unmodified	_DLAECCRAF_					0	0	0		CPSF2|p.L682Vfs*4|1|0.2|ENSG00000165934|chr14:92159204-92159205|TC/-|frameshift_variant;ENSG00000165934|ENST00000298875|CPSF2	CPSF2|p.L682Vfs*4|1|0.2|ENSG00000165934|chr14:92159204-92159205|TC/-|frameshift_variant	CPSF2|p.L682Vfs*4|1|0.2|ENSG00000165934|chr14:92159204-92159205|TC/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	514.620361328125	2	514.22042	1026.42629	-0.92605	-0.00047619	0.75583	0.00038866	-0.17022	-8.7531E-05	514.2208874336675	65.566	0.66151	66.304	66.018	66.68	0.73811					24	12	3	0	0	0	0.51106	2	24868	24868;24928		19.257	4.6385	1	2621100			6240	651	4275	4321	6075;6076	6075					-0.08586982128440468
DLAGLNETQF	10	Unmodified	_DLAGLNETQF_					0	0	0			REV__nc|ENSG00000064270|O75185-2|ATP2C2	REV__nc|ENSG00000064270|O75185-2|ATP2C2	MULTI-MSMS	A375_MHC_IP_R2	2	555.170654296875	2	554.269478	1106.5244	-0.74353	-0.00041211	-0.97499	-0.00054041	-1.7185	-0.00095252	554.2692073739278	64.651	1.0698	65.391	64.749	65.819	0.74022					42	20	3	0	0	0	0.69306	1	24430	24430		13.906	0.39817	1	5148900	+		6241	27110	4276	4322	6077	6077					-0.02459759007251705
DLAGPAPTAS	10	Unmodified	_DLAGPAPTAS_					0	0	0			REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	MSMS	A375_MHC_IP_R1	1	450.1713562011719	2	450.227082	898.439611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.318	1	48.318	47.818	48.818	0								0	0	0	0.10147	1	17037	17037		43.858	14.777	1		+		6242	21742	4277	4323	6078	6078					-0.013670847532011976
DLALIAREI	9	Unmodified	_DLALIAREI_					0	0	0		ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170;nc|ENSG00000154608|Q96L14|CEP170P1;nc|ENSG00000143702|Q5SW79-2|CEP170	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	507.97186279296875	2	507.303124	1012.5917	-0.59518	-0.00030194	-2.6491	-0.0013439	-3.2442	-0.0016458	507.80217943327864	85.03	0.25542	85.03	84.8	85.056	0					6	4	2	0	0	0	0.55818	1	31149	31149		16.942	4.4107	1	869110			6243	5425	4278	4324	6079	6079					0.08590315994376851
DLARYRQQLEH	11	Unmodified	_DLARYRQQLEH_					0	0	0		ENST00000563918.5_1_16:67210716-67213197:-|nuORF;nc|ENSG00000196123|Q68EN5-3|MATCAP1;ENST00000561679.5_1_16:67210716-67212831:-|nuORF;ENSG00000196123|ENST00000563902|MATCAP1	ENST00000563918.5_1_16:67210716-67213197:-|nuORF	ENST00000563918.5_1_16:67210716-67213197:-|nuORF	MSMS	A375_MHC_IP_R2	2	714.8709716796875	2	714.870756	1427.72696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.47	1	120	119.5	120.5	0.5321								0	0	0	0.16258	1	45513	45513		5.2969	0.39987	1				6244	9000	4279	4325	6080	6080					0.030205641180373277
DLASEWRA	8	Unmodified	_DLASEWRA_					0	0	0			REV__ENSG00000134815|ENST00000328771|DHX34	REV__ENSG00000134815|ENST00000328771|DHX34	MULTI-SECPEP	A375_MHC_IP_R2	2	473.6656494140625	2	474.232699	946.450845	-0.45154	-0.00021413	-0.31131	-0.00014763	-0.76285	-0.00036177	474.232540068928	43.064	0.50636	43.836	43.573	44.079	0.7724					13	9	2	0	0	0	0.91495	1	16081	16081		18.135	0	1	1413600	+		6245	18803	4280	4326	6081	6081					-0.0245226265905103
DLATYINMIW	10	Unmodified	_DLATYINMIW_					0	0	0		nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;ENST00000574224.1_1_16:16108407-16150188:+|nuORF	nc|ENSG00000103222|P33527-8|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	MULTI-SECPEP	A375_MHC_IP_R1	1	620.7090454101562	2	620.307549	1238.60055	-0.29	-0.00017989	3.3959	0.0021065	3.1059	0.0019266	620.3091970028502	82.682	0.50568	82.682	82.418	82.924	0					24	9	3	0	0	0	0.52461	1	30235	30235		43.858	1.7637	1	3144800			6246	2431	4281	4327	6082	6082					-0.009210784314518605
DLCCGSHDQEA	11	Unmodified	_DLCCGSHDQEA_					0	0	0			REV__ENST00000591349.5_1_19:14602519-14606929:-|nuORF	REV__ENST00000591349.5_1_19:14602519-14606929:-|nuORF	MSMS	A375_MHC_IP_R1	1	589.2042846679688	2	589.216063	1176.41757	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.767	1	68.767	68.267	69.267	0								0	0	0	0.16138	1	24943	24943		11.495	2.1116	1		+		6247	26443	4282	4328	6083	6083					-0.16358000555578656
DLCCGSHDQEA	11	Unmodified	_DLCCGSHDQEA_					0	0	0			REV__ENST00000591349.5_1_19:14602519-14606929:-|nuORF	REV__ENST00000591349.5_1_19:14602519-14606929:-|nuORF	MSMS	A375_MHC_IP_R2	2	589.2036743164062	2	589.216063	1176.41757	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.047	1	68.782	68.282	69.282	0.73511								0	0	0	0.16138	1	25787	25787		11.495	2.1116	1		+		6248	26443	4282	4328	6084	6084					-0.16358000555578656
DLCDPRERC	9	Unmodified	_DLCDPRERC_					0	0	0			REV__ENSG00000104142|ENST00000220509|VPS18	REV__ENSG00000104142|ENST00000220509|VPS18	MSMS	A375_MHC_IP_R1	1	553.6783447265625	2	553.739508	1105.46446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.496	1	59.496	58.996	59.996	0								0	0	0	0.15486	1	21401	21401		12.241	0.60036	1		+		6249	17306	4283	4329	6085	6085					-0.08405096213778052
DLCEDEEW	8	Unmodified	_DLCEDEEW_					0	0	0			REV__nc|ENSG00000160570|Q8WXF8-2|DEDD2	REV__nc|ENSG00000160570|Q8WXF8-2|DEDD2	MSMS	A375_MHC_IP_R1	1	519.6973876953125	2	519.689672	1037.36479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.819	1	59.819	59.319	60.319	0								0	0	0	0.16876	1	21526	21526		8.5933	4.264	1		+		6250	20175	4284	4330	6086	6086					-0.15239635346733849
DLCGFHYCL	9	Unmodified	_DLCGFHYCL_					0	0	0			REV__nc|ENSG00000106443|O94880-2|PHF14	REV__nc|ENSG00000106443|O94880-2|PHF14	MULTI-SECPEP	A375_MHC_IP_R1	1	1069.6903076171875	1	1070.4434	1069.43612	-0.467	-0.00049989	-3.1521	-0.0033742	-3.6191	-0.003874	1070.4420650805598	122.8	1.4617	122.8	122.63	124.09	0					39	28	2	0	0	0	0.75466	1	45926	45926		4.3292	0	1	96391000	+		6251	17449	4285	4331	6087	6087					-0.0958179412307345
DLCGHTEP	8	Unmodified	_DLCGHTEP_					0	0	0		ENSG00000187372|ENST00000341948|PCDHB13;ENSG00000120322|ENST00000239444|PCDHB8	ENSG00000187372|ENST00000341948|PCDHB13	ENSG00000187372|ENST00000341948|PCDHB13	MSMS	A375_MHC_IP_R2	2	436.1500244140625	2	436.18436	870.354167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.772	1	48.533	48.033	49.033	0.76128								0	0	0	0.16876	1	17924	17924		9.3474	0	1				6252	8822	4286	4332	6088	6088					-0.08619573210512499
DLCHYCENPEA	11	Unmodified	_DLCHYCENPEA_					0	0	0		nc|ENSG00000163803|Q6P1J6-3|PLB1;ENSG00000163803|ENST00000327757|PLB1;nc|ENSG00000163803|Q6P1J6-5|PLB1	nc|ENSG00000163803|Q6P1J6-3|PLB1	nc|ENSG00000163803|Q6P1J6-3|PLB1	MSMS	A375_MHC_IP_R2	2	647.247802734375	2	647.247363	1292.48017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.862	1	86.597	86.097	87.097	0.73428								0	0	0	0.16249	1	32650	32650		5.7319	0	1				6253	6723	4287	4333	6089	6089					-0.15436854487393248
DLCLECYY	8	Unmodified	_DLCLECYY_					0	0	0			REV__ENST00000479510.2_1_6:33387852-33406697:+|nuORF	REV__ENST00000479510.2_1_6:33387852-33406697:+|nuORF	MSMS	A375_MHC_IP_R1	1	511.19671630859375	2	511.203904	1020.39325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.107	1	75.107	74.607	75.607	0								0	0	0	0.16876	1	27361	27361		9.3474	1.4373	1		+		6254	22275	4288	4334	6090	6090					-0.11612608971165628
DLCNLLDCLCA	11	Unmodified	_DLCNLLDCLCA_					0	0	0			REV__ENSG00000005810|ENST00000544440|MYCBP2	REV__ENSG00000005810|ENST00000544440|MYCBP2	MSMS	A375_MHC_IP_R2	2	598.2034912109375	2	598.261427	1194.5083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.047	1	48.808	48.308	49.308	0.76128								0	0	0	0.15971	1	18035	18035		14.405	0	1		+		6255	16125	4289	4335	6091	6091					-0.08117247831660279
DLCQSSDLDV	10	Unmodified	_DLCQSSDLDV_					0	0	0		ZBTB6|p.P148L|1|0.32|ENSG00000186130|chr9:122911630-122911630|G/A|missense_variant	ZBTB6|p.P148L|1|0.32|ENSG00000186130|chr9:122911630-122911630|G/A|missense_variant	ZBTB6|p.P148L|1|0.32|ENSG00000186130|chr9:122911630-122911630|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	547.7056884765625	2	547.737154	1093.45975	-0.51436	-0.00028174	0.87048	0.00047679	0.35612	0.00019506	548.239269590475	104.2	0.2054	104.2	104.03	104.24	0					5	3	2	0	0	0	0.63639	1	38254	38254		18.146	4.2403	1	718610			6256	30186	4290	4336	6092	6092					-0.0832370187554261
DLCQSSGQEL	10	Unmodified	_DLCQSSGQEL_					0	0	0			REV__ENSG00000072840|ENST00000264956|EVC	REV__ENSG00000072840|ENST00000264956|EVC	MULTI-MSMS	A375_MHC_IP_R2	2	540.6775512695312	2	540.237321	1078.46009	-0.89211	-0.00048195	-1.1652	-0.0006295	-2.0573	-0.0011114	540.2365373262284	72.755	0.96616	73.49	73.226	74.192	0.73541					30	18	2	0	0	0	0.6502	1	27533	27533		17.113	0.1706	1	3173700	+		6257	16613	4291	4337	6093	6093					-0.0760028215568127
DLCSFCCQLY	10	Unmodified	_DLCSFCCQLY_					0	0	0			REV__ENST00000557403.5_1_14:23378802-23388343:-|nuORF	REV__ENST00000557403.5_1_14:23378802-23388343:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	597.0911865234375	2	597.735045	1193.45554	-0.14492	-8.6623E-05	-1.7405	-0.0010403	-1.8854	-0.001127	597.7340412254002	108.26	0.50751	108.26	107.85	108.36	0					13	9	2	0	0	0	0.93194	1	39657	39657		5.7319	1.7875	1	788220	+		6258	23883	4292	4338	6094	6094					-0.13345205894461287
DLCYTLFDVI	10	Unmodified	_DLCYTLFDVI_					0	0	0			REV__ENSG00000135966|ENST00000393359|TGFBRAP1	REV__ENSG00000135966|ENST00000393359|TGFBRAP1	MULTI-MSMS	A375_MHC_IP_R1	1	400.94287109375	3	401.198497	1200.57366	-0.24705	-9.9116E-05	-2.1284	-0.0008539	-2.3754	-0.00095302	401.197776787742	20.229	1.3732	20.229	19.725	21.098	0					65	26	4	0	0	0	0.69306	1	5106	5106		8.4443	0	1	15430000	+		6259	18904	4293	4339	6095	6095					-0.018601870426437017
DLDCDGKISR	10	Unmodified	_DLDCDGKISR_					0	0	0		CHP2|p.R127C|1|0.46|ENSG00000166869|chr16:23756414-23756414|C/T|missense_variant	CHP2|p.R127C|1|0.46|ENSG00000166869|chr16:23756414-23756414|C/T|missense_variant	CHP2|p.R127C|1|0.46|ENSG00000166869|chr16:23756414-23756414|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	373.91802978515625	3	374.513367	1120.51827	-0.11395	-4.2677E-05	0.21716	8.1331E-05	0.10321	3.8654E-05	374.51328887954156	25.795	0.35693	26.455	26.245	26.602	0.65992					11	6	2	0	0	0	0.8125	1	8701	8701		7.9454	4.0691	1	2691300			6260	390	4294	4340	6096	6096					-0.037166005104154465
DLDCDGKISR	10	Unmodified	_DLDCDGKISR_					0	0	0		CHP2|p.R127C|1|0.46|ENSG00000166869|chr16:23756414-23756414|C/T|missense_variant	CHP2|p.R127C|1|0.46|ENSG00000166869|chr16:23756414-23756414|C/T|missense_variant	CHP2|p.R127C|1|0.46|ENSG00000166869|chr16:23756414-23756414|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	374.513367	1120.51827	0.0082481	3.089E-06	-0.1024	-3.835E-05	-0.094152	-3.5261E-05	374.5130827410861	26.399	0.40595	26.399	26.118	26.524	0	-0.028318	-0.0001379	NaN	7.9454	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2310300			6261	390	4294	4340							-0.037166005104154465
DLDDAQRTLY	10	Unmodified	_DLDDAQRTLY_					0	0	0		ENST00000491507.1_1_3:75765690-75790926:-|nuORF;ENSG00000227124|ENST00000652011|ZNF717	ENST00000491507.1_1_3:75765690-75790926:-|nuORF	ENST00000491507.1_1_3:75765690-75790926:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	605.6909790039062	2	605.290942	1208.56733	-0.35577	-0.00021535	0.65142	0.0003943	0.29565	0.00017895	605.2912397413345	57.898	0.65929	57.898	57.518	58.177	0					20	12	2	0	0	0	0.022052	1	20735	20735		104.48	64.527	1	6362000			6262	9708	4295	4341	6097	6097					-0.0286098894978295
DLDDAQRTLY	10	Unmodified	_DLDDAQRTLY_					0	0	0		ENST00000491507.1_1_3:75765690-75790926:-|nuORF;ENSG00000227124|ENST00000652011|ZNF717	ENST00000491507.1_1_3:75765690-75790926:-|nuORF	ENST00000491507.1_1_3:75765690-75790926:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	605.6918334960938	2	605.290942	1208.56733	-0.81017	-0.00049039	0.41024	0.00024832	-0.39993	-0.00024207	605.2912936682067	57.188	0.56087	57.938	57.712	58.273	0.75015					27	10	3	0	0	0	0.0064267	1	21597	21597		128.57	80.227	1	7834000			6263	9708	4295	4341	6098	6098					-0.0286098894978295
DLDDWPREL	9	Unmodified	_DLDDWPREL_					0	0	0		ENSG00000135439|ENST00000547588|AGAP2;nc|ENSG00000135439|Q99490|AGAP2;nc|ENSG00000135439|Q99490-2|AGAP2	ENSG00000135439|ENST00000547588|AGAP2	ENSG00000135439|ENST00000547588|AGAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	580.1766967773438	2	579.774928	1157.5353	-0.23572	-0.00013667	1.815	0.0010523	1.5792	0.00091561	579.776668245252	59.124	0.86485	59.124	58.633	59.498	0					45	16	4	0	0	0	0.38578	1	21227	21227		27.629	0	1	9290100			6264	4682	4296	4342	6099	6099					-0.037163566329581954
DLDESPLSDAE	11	Unmodified	_DLDESPLSDAE_					0	0	0			REV__ENSG00000165684|ENST00000684778|SNAPC4	REV__ENSG00000165684|ENST00000684778|SNAPC4	MULTI-SECPEP	A375_MHC_IP_R2	2	596.1552734375	2	595.756598	1189.49864	-0.48279	-0.00028763	0.13666	8.1417E-05	-0.34613	-0.00020621	595.7564381625083	101.37	0.66005	102.13	101.96	102.62	0.76428					13	12	2	0	0	0	0.99331	1	38571	38571		1.0715	0	1	3153900	+		6265	20611	4297	4343	6100	6100					-0.08852698040163887
DLDFRNEL	8	Unmodified	_DLDFRNEL_					0	0	0			REV__tr|U7STE9|U7STE9_FUSNUD-3-phosphoglyceratedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01033PE=3SV=1	REV__tr|U7STE9|U7STE9_FUSNUD-3-phosphoglyceratedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01033PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	511.68170166015625	2	511.251089	1020.48762	-0.33046	-0.00016895	-0.75349	-0.00038522	-1.0839	-0.00055417	511.2506475298584	71.219	0.30773	71.219	71.005	71.313	0					6	5	2	0	0	0	0.72008	1	25859	25859		28.487	8.0332	1	538250	+		6266	28481	4298	4344	6101	6101					-0.021800108331490264
DLDHFLPEA	9	Unmodified	_DLDHFLPEA_					0	0	0			REV__ENSG00000162761|ENST00000342310|LMX1A	REV__ENSG00000162761|ENST00000342310|LMX1A	MULTI-MSMS	A375_MHC_IP_R2	2	529.153076171875	2	528.753464	1055.49238	-0.59896	-0.0003167	-0.47187	-0.0002495	-1.0708	-0.0005662	528.7531100058876	70.787	0.50412	71.521	71.302	71.806	0.73421					21	9	3	0	0	0	0.25276	1	26825	26825		34.102	5.6156	1	13928000	+		6267	20305	4299	4345	6102	6102					-0.03315126690381476
DLDHSIGTQY	10	Unmodified	_DLDHSIGTQY_					0	0	0		nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4	nc|ENSG00000092203|O94842-2|TOX4	nc|ENSG00000092203|O94842-2|TOX4	MULTI-SECPEP	A375_MHC_IP_R1	1	575.1644897460938	2	574.76456	1147.51457	-0.19453	-0.00011181	0.032534	1.8699E-05	-0.162	-9.311E-05	574.76461375579	50.742	0.66059	50.742	50.408	51.068	0					34	12	4	0	0	0	0.072569	1	17951	17951		110.67	110.67	1	22701000			6268	2001	4300	4346	6103	6103					-0.053289470125946536
DLDHSIGTQY	10	Unmodified	_DLDHSIGTQY_					0	0	0		nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4	nc|ENSG00000092203|O94842-2|TOX4	nc|ENSG00000092203|O94842-2|TOX4	MULTI-MSMS	A375_MHC_IP_R2	2	574.2288208007812	2	574.76456	1147.51457	-0.40801	-0.00023451	0.41448	0.00023823	0.006467	3.717E-06	574.7647888132901	50.109	1.2704	50.863	50.394	51.665	0.75406					63	23	4	0	0	0	0.0044674	1	18878	18878		96.367	50.667	1	22669000			6269	2001	4300	4346	6104	6104					-0.053289470125946536
DLDIDWYYRLQ	11	Unmodified	_DLDIDWYYRLQ_					0	0	0			REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	MSMS	A375_MHC_IP_R1	1	500.4748229980469	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.61	1	107.61	107.11	108.11	0								0	0	0	0.16334	1	39483	39483		0.45452	0	1		+		6270	17885	4301	4347	6105	6105					-0.02016195927467379
DLDIDWYYRLQ	11	Unmodified	_DLDIDWYYRLQ_					0	0	0			REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	MSMS	A375_MHC_IP_R2	2	500.4745788574219	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.289	1	72.023	71.523	72.523	0.73421								0	0	0	0.16302	1	27041	27041		1.2148	0	1		+		6271	17885	4301	4347	6106	6106					-0.02016195927467379
DLDIDWYYRLQ	11	Unmodified	_DLDIDWYYRLQ_					0	0	0			REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	MSMS	A375_MHC_IP_R2	2	500.47467041015625	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.736	1	100.5	99.999	101	0.76278								0	0	0	0.16334	1	37832	37832		0.45452	0	1		+		6272	17885	4301	4347	6107	6107					-0.02016195927467379
DLDIDWYYRLQ	11	Unmodified	_DLDIDWYYRLQ_					0	0	0			REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	MSMS	A375_MHC_IP_R2	2	500.474365234375	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.15	1	103.91	103.41	104.41	0.76428								0	0	0	0.16334	1	39069	39069		0.45452	0	1		+		6273	17885	4301	4347	6108	6108					-0.02016195927467379
DLDIFDYR	8	Unmodified	_DLDIFDYR_					0	0	0			REV__nc|ENSG00000074603|Q6V1X1-5|DPP8	REV__nc|ENSG00000074603|Q6V1X1-5|DPP8	MULTI-MSMS	A375_MHC_IP_R1	1	528.6959838867188	2	528.753464	1055.49238	-0.35815	-0.00018937	-0.042741	-2.2599E-05	-0.40089	-0.00021197	528.7530666573401	71.541	0.55415	71.541	71.211	71.765	0					20	10	3	0	0	0	0.69583	1	26025	26025		36.044	0	1	12594000	+		6274	16637	4302	4348	6109	6109					-0.03315126690404213
DLDKELNNY	9	Unmodified	_DLDKELNNY_					0	0	0		ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	A375_MHC_IP_R1	1	562.6664428710938	2	562.266936	1122.51932	-0.38936	-0.00021892	0.047764	2.6856E-05	-0.34159	-0.00019207	562.2669213434691	52.111	0.60945	52.111	51.829	52.438	0					20	11	2	0	0	0	0.04093	3	18504	18484;18504;18541		67.838	20.089	1	5866500			6275	1266	4303	4349	6110;6111;6112	6111					-0.03704062869860536
DLDKHSTQF	9	Unmodified	_DLDKHSTQF_					0	0	0			REV__MRAP2|p.S197F|2|0.52|ENSG00000135324|chr6:84089453-84089453|C/T|missense_variant	REV__MRAP2|p.S197F|2|0.52|ENSG00000135324|chr6:84089453-84089453|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	545.736572265625	2	545.76182	1089.50909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.123	1	57.123	56.623	57.623	0								0	0	0	0.15468	1	20482	20482		13.906	0.39817	1		+		6276	27034	4304	4350	6113	6113					-0.03208625804450094
DLDKKIDQY	9	Unmodified	_DLDKKIDQY_					0	0	0			REV__tr|U7T063|U7T063_FUSNURibonucleasePproteincomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnpAPE=3SV=1	REV__tr|U7T063|U7T063_FUSNURibonucleasePproteincomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnpAPE=3SV=1	MSMS	A375_MHC_IP_R1	1	569.4124145507812	2	569.292953	1136.57135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.299	1	84.299	83.799	84.799	0								0	0	0	0.1535	1	30872	30872		15.847	1.2655	1		+		6277	28668	4305	4351	6114	6114					0.008531005438953798
DLDLAYSEQF	10	Unmodified	_DLDLAYSEQF_					0	0	0			REV__ENSG00000137124|ENST00000377698|ALDH1B1	REV__ENSG00000137124|ENST00000377698|ALDH1B1	MULTI-SECPEP	A375_MHC_IP_R1	1	401.2839050292969	3	400.852154	1199.53463	-0.4574	-0.00018335	-0.91056	-0.000365	-1.368	-0.00054835	400.85140072831757	19.394	0.50369	19.394	19.221	19.725	0					16	11	2	0	0	0	0.91909	1	4858	4858		8.4443	2.6609	1	4474500	+		6278	18987	4306	4352	6115	6115					-0.05715196072674189
DLDLDVVGKRV	11	Unmodified	_DLDLDVVGKRV_					0	0	0			REV__MB21D2|p.E95K|1|0.45|ENSG00000180611|chr3:192799579-192799579|C/T|missense_variant	REV__MB21D2|p.E95K|1|0.45|ENSG00000180611|chr3:192799579-192799579|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	409.9226379394531	3	410.23471	1227.6823	0.064569	2.6488E-05	-0.73437	-0.00030126	-0.6698	-0.00027478	410.2348458506811	23.118	0.25163	23.118	22.924	23.176	0					7	4	2	0	0	0	0.99332	1	6241	6241		10.315	3.6918	1	1317900	+		6279	26993	4307	4353	6116	6116					0.07756740251988958
DLDLESPKSLY	11	Unmodified	_DLDLESPKSLY_					0	0	0		nc|ENSG00000102908|O94916|NFAT5;nc|ENSG00000102908|O94916-4|NFAT5;ENSG00000102908|ENST00000349945|NFAT5;nc|ENSG00000102908|O94916-3|NFAT5;ENST00000393742.6_1_16:69600141-69680463:+|nuORF	nc|ENSG00000102908|O94916|NFAT5	nc|ENSG00000102908|O94916|NFAT5	MULTI-MSMS	A375_MHC_IP_R1	1	640.7234497070312	2	640.32445	1278.63435	-0.81546	-0.00052216	0.26215	0.00016786	-0.55331	-0.0003543	640.3245749360191	86.39	0.55818	86.39	86.121	86.679	0					30	10	4	0	0	0	0.0015197	1	31646	31646		125.18	73.766	1	9342000			6280	2401	4308	4354	6117	6117					0.006176215413006503
DLDLESPKSLY	11	Unmodified	_DLDLESPKSLY_					0	0	0		nc|ENSG00000102908|O94916|NFAT5;nc|ENSG00000102908|O94916-4|NFAT5;ENSG00000102908|ENST00000349945|NFAT5;nc|ENSG00000102908|O94916-3|NFAT5;ENST00000393742.6_1_16:69600141-69680463:+|nuORF	nc|ENSG00000102908|O94916|NFAT5	nc|ENSG00000102908|O94916|NFAT5	MULTI-MSMS	A375_MHC_IP_R2	2	640.7242431640625	2	640.32445	1278.63435	-0.56846	-0.000364	-0.16478	-0.00010552	-0.73325	-0.00046951	640.3244941953374	85.744	0.60934	86.48	86.239	86.848	0.73602					25	11	3	0	0	0	0.00051605	3	32619	32619;32667;32675		128.87	77.454	1	5262600			6281	2401	4308	4354	6118;6119;6120	6118					0.006176215413006503
DLDNKLKSY	9	Unmodified	_DLDNKLKSY_					0	0	0			REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6870727539062	2	548.287671	1094.56079	-1.1488	-0.00062988	-0.26257	-0.00014396	-1.4114	-0.00077384	548.2875752160332	26.589	0.6091	27.249	26.857	27.466	0.65992					16	11	2	0	0	0	0.57806	1	9023	9023		26.268	3.5319	1	6475100	+		6282	28309	4309	4355	6121	6121					0.017291178894765835
DLDNKYFK	8	Unmodified	_DLDNKYFK_					0	0	0		ATP8B4|p.D605N|1|0.43|ENSG00000104043|chr15:49920356-49920356|C/T|missense_variant	ATP8B4|p.D605N|1|0.43|ENSG00000104043|chr15:49920356-49920356|C/T|missense_variant	ATP8B4|p.D605N|1|0.43|ENSG00000104043|chr15:49920356-49920356|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	522.1625366210938	2	521.763832	1041.51311	-0.5805	-0.00030288	-0.96309	-0.00050251	-1.5436	-0.00080539	521.7634293675887	73.821	1.3757	74.558	73.837	75.213	0.7367					31	26	2	0	0	0	0.8957	1	28076	28076		15.847	7.937	1	1354200			6283	212	4310	4356	6122	6122					-0.00598536310712916
DLDNTQLDF	9	Unmodified	_DLDNTQLDF_					0	0	0		nc|ENSG00000111087|P08151-3|GLI1;nc|ENSG00000111087|P08151-2|GLI1;ENSG00000111087|ENST00000228682|GLI1	nc|ENSG00000111087|P08151-3|GLI1	nc|ENSG00000111087|P08151-3|GLI1	MULTI-SECPEP	A375_MHC_IP_R1	1	541.2134399414062	2	540.745836	1079.47712	-0.82921	-0.00044839	-0.85092	-0.00046013	-1.6801	-0.00090852	540.7456537164635	66.403	0.56079	66.403	66.173	66.734	0					16	10	2	0	0	0	0.67483	1	24033	24033		10.074	0	1	1176100			6284	2964	4311	4357	6123	6123					-0.05944038278244079
DLDPNEKW	8	Unmodified	_DLDPNEKW_					0	0	0			REV__tr|U7SRI0|U7SRI0_FUSNUD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01609PE=4SV=1	REV__tr|U7SRI0|U7SRI0_FUSNUD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01609PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	509.1373291015625	2	508.737814	1015.46108	-0.78435	-0.00039903	-0.085364	-4.3428E-05	-0.86972	-0.00044246	508.7378535238778	39.773	0.35577	40.548	40.371	40.727	0.77451					14	6	3	0	0	0	0.7256	1	14715	14715		26.884	3.7352	1	2259000	+		6285	28398	4312	4358	6124	6124					-0.046036997244755185
DLDQEPSLLY	10	Unmodified	_DLDQEPSLLY_					0	0	0		ENSG00000204420|ENST00000649779|MPIG6B;nc|ENSG00000204420|O95866-5|MPIG6B;nc|ENSG00000204420|O95866-3|MPIG6B	ENSG00000204420|ENST00000649779|MPIG6B	ENSG00000204420|ENST00000649779|MPIG6B	MULTI-MSMS	A375_MHC_IP_R2	2	597.7138671875	2	596.790244	1191.56593	-0.4835	-0.00028855	0.13858	8.2706E-05	-0.34491	-0.00020584	596.790228562235	78.868	0.76082	79.613	79.287	80.047	0.74473					39	14	4	0	0	0	0.62155	1	29893	29893		19.257	0	1	14675000			6286	9441	4313	4359	6125	6125					-0.022186230385386807
DLDRHQYNY	9	Unmodified	_DLDRHQYNY_					0	0	0		ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	MULTI-MSMS	A375_MHC_IP_R2	2	408.4331359863281	3	408.51951	1222.5367	-0.39589	-0.00016173	-0.76851	-0.00031395	-1.1644	-0.00047568	408.8533739972346	26.243	0.30463	26.903	26.703	27.008	0.65992					7	5	2	0	0	0	0.67332	1	8858	8858		6.1918	3.1196	1	794800			6287	4816	4314	4360	6126	6126					-0.06566722544175718
DLDRIRTL	8	Unmodified	_DLDRIRTL_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21867883-21868626:-|nuORF	nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000012817|Q9BY66-2|KDM5D	MULTI-SECPEP	A375_MHC_IP_R2	2	501.6790771484375	2	501.290548	1000.56654	-0.5611	-0.00028128	-0.62729	-0.00031445	-1.1884	-0.00059573	501.29011625691896	132.19	0.91315	132.38	131.7	132.61	0.18953					21	17	2	0	0	0	0.96266	1	51968	51968		3.9444	1.6417	1	1695200			6288	1013	4315	4361	6127	6127					0.06628261191815454
DLDRLQIF	8	Unmodified	_DLDRLQIF_					0	0	0			REV__MST1R|p.S1056F|1|0.47|ENSG00000164078|chr3:49895271-49895271|G/A|missense_variant	REV__MST1R|p.S1056F|1|0.47|ENSG00000164078|chr3:49895271-49895271|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	510.1869812011719	2	510.279649	1018.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.279	1	72.014	71.514	72.514	0.73421								0	0	0	0.16876	1	27036	27036		23.148	1.4018	1		+		6289	27043	4316	4362	6128	6128					0.036214564432498264
DLDSQKFGF	9	Unmodified	_DLDSQKFGF_					0	0	0			REV__nc|ENSG00000083223|Q5VYS8-6|TUT7	REV__nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-SECPEP	A375_MHC_IP_R1	1	529.1530151367188	2	528.753464	1055.49238	-0.35815	-0.00018937	-0.042741	-2.2599E-05	-0.40089	-0.00021197	528.7530666573401	71.541	0.55415	71.541	71.211	71.765	0					20	10	3	0	0	0	0.28475	1	25965	25965		39.957	0	1	12594000	+		6290	16801	4317	4363	6129	6129					-0.03315126690381476
DLDSRVLYY	9	Unmodified	_DLDSRVLYY_					0	0	0		ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	ENSG00000130816|ENST00000359526|DNMT1	ENSG00000130816|ENST00000359526|DNMT1	MULTI-SECPEP	A375_MHC_IP_R1	1	572.6876831054688	2	572.287671	1142.56079	-0.26847	-0.00015364	0.47022	0.0002691	0.20175	0.00011546	572.287660070822	81.345	2.8376	81.345	80.136	82.974	0					118	55	6	0	0	0	0.046478	1	29682	29682		92.653	48.795	1	63866000			6291	4284	4318	4364	6130	6130					-0.004788821105421448
DLDSRVLYY	9	Unmodified	_DLDSRVLYY_					0	0	0		ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	ENSG00000130816|ENST00000359526|DNMT1	ENSG00000130816|ENST00000359526|DNMT1	MULTI-SECPEP	A375_MHC_IP_R2	2	572.6875610351562	2	572.287671	1142.56079	-0.32937	-0.0001885	-0.22894	-0.00013102	-0.55832	-0.00031952	572.2874084607981	80.697	2.1808	81.442	80.505	82.686	0.74474					79	42	3	0	0	0	0.056023	1	30565	30565		85.642	20.406	1	62098000			6292	4284	4318	4364	6131	6131					-0.004788821105421448
DLDSRWIF	8	Unmodified	_DLDSRWIF_					0	0	0		ENST00000498255.6_1_13:42772627-42773776:+|nuORF	ENST00000498255.6_1_13:42772627-42773776:+|nuORF	ENST00000498255.6_1_13:42772627-42773776:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	526.1762084960938	2	526.263999	1050.51345	-0.60137	-0.00031648	-0.32165	-0.00016927	-0.92302	-0.00048575	526.2638721924519	72.447	0.76077	73.183	72.872	73.633	0.7354					43	14	4	0	0	0	0.72008	1	27641	27641		28.487	0.85804	1	26288000			6293	12757	4319	4365	6132	6132					-0.0097911659086094
DLDTRTTLSLW	11	Unmodified	_DLDTRTTLSLW_					0	0	0		NOS3|p.S391L|1|0.25|ENSG00000164867|chr7:151000538-151000538|C/T|missense_variant	NOS3|p.S391L|1|0.25|ENSG00000164867|chr7:151000538-151000538|C/T|missense_variant	NOS3|p.S391L|1|0.25|ENSG00000164867|chr7:151000538-151000538|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	661.242919921875	2	660.843342	1319.67213	-0.77753	-0.00051383	0.13912	9.1939E-05	-0.63841	-0.00042189	660.8434174370377	84.61	0.81277	85.346	85.018	85.831	0.73601					43	15	4	0	0	0	0.62672	1	32111	32111		32.037	6.0168	1	18320000			6294	15016	4320	4366	6133	6133					0.025081325267592547
DLDTSLCDIC	10	Unmodified	_DLDTSLCDIC_					0	0	0		ENSG00000001629|ENST00000265742|ANKIB1	ENSG00000001629|ENST00000265742|ANKIB1	ENSG00000001629|ENST00000265742|ANKIB1	MSMS	A375_MHC_IP_R1	1	549.1774291992188	2	549.228107	1096.44166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.657	1	82.657	82.157	83.157	0								0	0	0	0.14601	1	30230	30230		25.399	4.9457	1				6295	849	4321	4367	6134	6134					-0.10270160121922345
DLDTSWVDF	9	Unmodified	_DLDTSWVDF_					0	0	0		nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN;RELN|p.E1720Kfs*109|1|0.28|ENSG00000189056|chr7:103565330-103565330|C/-|frameshift_variant	nc|ENSG00000189056|P78509-3|RELN	nc|ENSG00000189056|P78509-3|RELN	MULTI-SECPEP	A375_MHC_IP_R2	2	550.0283813476562	2	549.242929	1096.47131	-0.7726	-0.00042434	3.1225	0.001715	2.3499	0.0012907	549.2448884086994	73.911	0.35746	74.648	74.449	74.807	0.73751					10	6	2	0	0	0	0.73363	1	28099	28099		15.847	15.389	1	1078600			6296	8956	4322	4368	6135	6135					-0.07307136789904689
DLDTSWVDFV	10	Unmodified	_DLDTSWVDFV_					0	0	0		nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN;RELN|p.E1720Kfs*109|1|0.28|ENSG00000189056|chr7:103565330-103565330|C/-|frameshift_variant	nc|ENSG00000189056|P78509-3|RELN	nc|ENSG00000189056|P78509-3|RELN	MULTI-SECPEP	A375_MHC_IP_R1	1	598.1927490234375	2	598.777136	1195.53972	-0.37826	-0.00022649	-0.28662	-0.00017162	-0.66487	-0.00039811	598.7768696393855	55.369	0.91666	55.369	54.924	55.841	0					40	17	3	0	0	0	0.8125	1	19885	19885		18.146	3.3081	1	8632800			6297	8956	4323	4369	6136	6136					-0.050228922100586715
DLDTTDTGYY	10	Unmodified	_DLDTTDTGYY_					0	0	0		ENSG00000169071|ENST00000375708|ROR2	ENSG00000169071|ENST00000375708|ROR2	ENSG00000169071|ENST00000375708|ROR2	MSMS	A375_MHC_IP_R1	1	582.1740112304688	2	582.240583	1162.46661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.486	1	94.486	93.986	94.986	0								0	0	0	0.15308	1	34729	34729		10.824	0.75	1				6298	7378	4324	4370	6137	6137					-0.10812065723325759
DLDTTIMFAT	10	Unmodified	_DLDTTIMFAT_					0	0	0		nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1;ENST00000486788.2_1_9:35704327-35706084:-|nuORF;ENSG00000171914|ENST00000636159|TLN2	nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000171914|ENST00000636159|TLN2	nc|ENSG00000137076|Q9Y490-2|TLN1	MULTI-MSMS	A375_MHC_IP_R2	2	564.7205200195312	2	564.26809	1126.52163	-0.4455	-0.00025138	3.5732	0.0020163	3.1277	0.0017649	564.7726754103409	73.612	0.25494	74.348	74.141	74.396	0.73541					5	4	2	0	0	0	0.69306	1	27906	27906		13.906	3.8321	1	406890			6299	4857;7658	4325	4371	6138	6138					-0.03657350456387576
DLEAVLADVSY	11	Unmodified	_DLEAVLADVSY_					0	0	0		ENSG00000100077|ENST00000324198|GRK3;ENSG00000173020|ENST00000308595|GRK2	ENSG00000100077|ENST00000324198|GRK3	ENSG00000100077|ENST00000324198|GRK3	MSMS	A375_MHC_IP_R2	2	597.8795776367188	2	597.798069	1193.58158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.96	1	101.72	101.22	102.22	0.76418								0	0	0	0.16108	1	38273	38273		13.042	2.2185	1				6300	2111	4326	4372	6139	6139					-0.007463365215016893
DLEDGPCGHS	10	Unmodified	_DLEDGPCGHS_					0	0	0		nc|ENSG00000147804|Q6P5W5-2|SLC39A4;ENSG00000147804|ENST00000301305|SLC39A4	nc|ENSG00000147804|Q6P5W5-2|SLC39A4	nc|ENSG00000147804|Q6P5W5-2|SLC39A4	MSMS	A375_MHC_IP_R2	2	515.2151489257812	2	515.200738	1028.38692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.16	1	138.24	137.74	138.74	0.083969								0	0	0	0.15435	1	54191	54191		6.7232	1.9672	1				6301	5706	4327	4373	6140	6140					-0.12613410878316245
DLEDHDGLV	9	Unmodified	_DLEDHDGLV_					0	0	0		ENSG00000154227|ENST00000679737|CERS3	ENSG00000154227|ENST00000679737|CERS3	ENSG00000154227|ENST00000679737|CERS3	MULTI-MSMS	A375_MHC_IP_R1	1	507.1340637207031	2	506.732729	1011.4509	-0.38462	-0.0001949	1.1592	0.0005874	0.77457	0.0003925	506.7332467279836	74.003	0.75965	74.003	73.64	74.4	0					27	14	2	0	0	0	0.64808	1	26933	26933		11.64	2.2929	1	3604300			6302	6071	4328	4374	6141	6141					-0.0543630744971324
DLEEDTWY	8	Unmodified	_DLEEDTWY_					0	0	0		nc|ENSG00000257017|P00738-2|HP;ENSG00000257017|ENST00000355906|HP;ENSG00000261701|ENST00000540303|HPR;nc|ENSG00000261701|P00739-2|HPR	nc|ENSG00000257017|P00738-2|HP	nc|ENSG00000257017|P00738-2|HP	MULTI-SECPEP	A375_MHC_IP_R2	2	536.0629272460938	2	535.719287	1069.42402	-0.84999	-0.00045536	3.6986	0.0019814	2.8486	0.001526	536.223083031992	75.588	0.35792	76.328	76.232	76.589	0.74052					10	6	2	0	0	0	0.94479	1	28780	28780		2.0598	0	1	887810			6303	9902	4329	4375	6142	6142					-0.10791416060874326
DLEEENRVLKE	11	Unmodified	_DLEEENRVLKE_					0	0	0		nc|ENSG00000128487|Q5M775-5|SPECC1;nc|ENSG00000128487|Q5M775-3|SPECC1;nc|ENSG00000128487|Q5M775-2|SPECC1;nc|ENSG00000128487|Q5M775-4|SPECC1;ENSG00000128487|ENST00000395527|SPECC1	nc|ENSG00000128487|Q5M775-5|SPECC1	nc|ENSG00000128487|Q5M775-5|SPECC1	MSMS	A375_MHC_IP_R1	1	687.7462768554688	2	687.348988	1372.68342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.389	1	98.389	97.889	98.889	0								0	0	0	0.16249	1	36149	36149		5.7319	0	1				6304	4137	4330	4376	6143	6143					0.011989098302365164
DLEEMEDSY	9	Unmodified	_DLEEMEDSY_					0	0	0		nc|ENSG00000106078|O75128-3|COBL;ENSG00000106078|ENST00000265136|COBL;nc|ENSG00000106078|O75128-7|COBL;nc|ENSG00000106078|O75128-2|COBL;nc|ENSG00000106078|O75128-6|COBL;ENST00000462395.1_1_7:51085250-51098638:-|nuORF	nc|ENSG00000106078|O75128-3|COBL	nc|ENSG00000106078|O75128-3|COBL	MSMS	A375_MHC_IP_R1	1	565.69775390625	2	565.713344	1129.41214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.8	1	110.8	110.3	111.3	0								0	0	0	0.15486	1	40621	40621		7.9102	2.1497	1				6305	2666	4331	4377	6144	6144					-0.14739400866392316
DLEEMEDSY	9	Unmodified	_DLEEMEDSY_					0	0	0		nc|ENSG00000106078|O75128-3|COBL;ENSG00000106078|ENST00000265136|COBL;nc|ENSG00000106078|O75128-7|COBL;nc|ENSG00000106078|O75128-2|COBL;nc|ENSG00000106078|O75128-6|COBL;ENST00000462395.1_1_7:51085250-51098638:-|nuORF	nc|ENSG00000106078|O75128-3|COBL	nc|ENSG00000106078|O75128-3|COBL	MSMS	A375_MHC_IP_R2	2	565.7236938476562	2	565.713344	1129.41214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.15	1	102.91	102.41	103.41	0.76428								0	0	0	0.15486	1	38710	38710		7.9102	5.0209	1				6306	2666	4331	4377	6145	6145					-0.14739400866392316
DLEEMEDSY	9	Unmodified	_DLEEMEDSY_					0	0	0		nc|ENSG00000106078|O75128-3|COBL;ENSG00000106078|ENST00000265136|COBL;nc|ENSG00000106078|O75128-7|COBL;nc|ENSG00000106078|O75128-2|COBL;nc|ENSG00000106078|O75128-6|COBL;ENST00000462395.1_1_7:51085250-51098638:-|nuORF	nc|ENSG00000106078|O75128-3|COBL	nc|ENSG00000106078|O75128-3|COBL	MSMS	A375_MHC_IP_R2	2	565.6812744140625	2	565.713344	1129.41214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.75	1	108.5	108	109	0.75436								0	0	0	0.15486	1	40698	40698		8.5933	2.2392	1				6307	2666	4331	4377	6146	6146					-0.14739400866392316
DLEFAGLILW	10	Unmodified	_DLEFAGLILW_					0	0	0			REV__ENST00000442856.1_1_16:79338-84879:-|nuORF	REV__ENST00000442856.1_1_16:79338-84879:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	393.27294921875	3	392.881497	1175.62266	-0.29904	-0.00011749	0.33301	0.00013083	0.033977	1.3349E-05	392.8814840007281	45.067	0.50945	45.836	45.492	46.001	0.76909					21	9	3	0	0	0	0.91328	1	16830	16830		17.443	16.113	1	1309900	+		6308	24821	4332	4378	6147	6147					0.0418746930861289
DLEFAGLILW	10	Unmodified	_DLEFAGLILW_					0	0	0			REV__ENST00000442856.1_1_16:79338-84879:-|nuORF	REV__ENST00000442856.1_1_16:79338-84879:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	392.881497	1175.62266	0.23776	9.3411E-05	-0.0042936	-1.6869E-06	0.23346	9.1724E-05	392.88145201206385	45.899	0.4575	45.899	45.534	45.992	0	0.031597	-0.00028966	NaN	17.443	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1656900	+		6309	24821	4332	4378							0.0418746930861289
DLEGIRESL	9	Unmodified	_DLEGIRESL_					0	0	0		nc|ENSG00000089177|Q96L93-6|KIF16B;nc|ENSG00000089177|Q96L93-4|KIF16B;ENSG00000089177|ENST00000354981|KIF16B;nc|ENSG00000089177|Q96L93-2|KIF16B	nc|ENSG00000089177|Q96L93-6|KIF16B	nc|ENSG00000089177|Q96L93-6|KIF16B	MSMS	A375_MHC_IP_R2	2	516.1919555664062	2	516.272021	1030.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.743	1	64.484	63.984	64.984	0.74022								0	0	0	0.11332	1	24170	24170		37.974	3.8716	1				6310	1919	4333	4379	6148	6148					0.01544544855391905
DLEGLLEWD	9	Unmodified	_DLEGLLEWD_					0	0	0			REV__ENST00000470840.5_1_9:131140285-131152010:+|nuORF	REV__ENST00000470840.5_1_9:131140285-131152010:+|nuORF	MSMS	A375_MHC_IP_R2	2	545.1837768554688	2	545.258579	1088.50261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.9	1	115.59	115.09	116.09	0.68999								0	0	0	0.040533	1	43315	43315		57.471	27.247	1		+		6311	20735	4334	4380	6149	6149					-0.03810563755791918
DLEHKHEEL	9	Unmodified	_DLEHKHEEL_					0	0	0			REV__ENSG00000100592|ENST00000360909|DAAM1	REV__ENSG00000100592|ENST00000360909|DAAM1	MULTI-MSMS	A375_MHC_IP_R1	1	575.2903442382812	2	575.280377	1148.5462	-0.068913	-3.9644E-05	-0.34385	-0.00019781	-0.41276	-0.00023745	575.2791805238497	105.74	0.30546	105.74	105.6	105.91	0					8	5	2	0	0	0	0.58047	1	38813	38813		15.847	4.2069	1	1904100	+		6312	17106	4335	4381	6150	6150					-0.022129542586753814
DLEHKLNYYFN	11	Unmodified	_DLEHKLNYYFN_					0	0	0		tr|U7T2I2|U7T2I2_FUSNURibonuclease3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rncPE=3SV=1	tr|U7T2I2|U7T2I2_FUSNURibonuclease3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rncPE=3SV=1	tr|U7T2I2|U7T2I2_FUSNURibonuclease3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rncPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	728.7467651367188	2	728.348791	1454.68303	-0.84503	-0.00061547	-3.67	-0.0026731	-4.5151	-0.0032885	728.3461135334788	75.143	0.45361	75.88	75.57	76.023	0.73752					12	8	2	0	0	0	0.72649	1	28542	28542		12.241	0.74595	1	2120100			6313	29933	4336	4382	6151	6151					-0.026124650989459042
DLEKEAPWEY	10	Unmodified	_DLEKEAPWEY_					0	0	0		FGFR1OP-ABCC4|1|fusion;nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4	FGFR1OP-ABCC4|1|fusion	FGFR1OP-ABCC4|1|fusion	MULTI-SECPEP	A375_MHC_IP_R1	1	640.9898681640625	2	640.295693	1278.57683	-0.58761	-0.00037624	0.76928	0.00049257	0.18167	0.00011632	640.2962826461066	79.621	0.61473	79.621	79.316	79.931	0					25	11	3	0	0	0	0.35635	1	29101	29101		59.052	35.263	1	4537500			6314	3947	4337	4383	6152	6152					-0.05131220664270586
DLEKEAPWEY	10	Unmodified	_DLEKEAPWEY_					0	0	0		FGFR1OP-ABCC4|1|fusion;nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4	FGFR1OP-ABCC4|1|fusion	FGFR1OP-ABCC4|1|fusion	MULTI-SECPEP	A375_MHC_IP_R2	2	640.9896850585938	2	640.295693	1278.57683	-0.65236	-0.0004177	-0.63008	-0.00040343	-1.2824	-0.00082114	640.2953168612707	79.041	0.55759	79.786	79.54	80.098	0.74474					25	10	3	0	0	0	0.60589	1	30034	30034		42.312	17.322	1	3852900			6315	3947	4337	4383	6153	6153					-0.05131220664270586
DLELDRWSLRQ	11	Unmodified	_DLELDRWSLRQ_					0	0	0		ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	MSMS	A375_MHC_IP_R1	1	715.831787109375	2	715.872965	1429.73138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.79	1	122.79	122.29	123.29	0								0	0	0	0.15837	1	45764	45764		15.248	3.0078	1				6316	7548	4338	4384	6154	6154					0.03370028540939529
DLELEVKKNL	10	Unmodified	_DLELEVKKNL_					0	0	0			REV__ENSG00000153933|ENST00000284061|DGKE	REV__ENSG00000153933|ENST00000284061|DGKE	MSMS	A375_MHC_IP_R2	2	600.6773681640625	2	600.845353	1199.67615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.4	1	102.16	101.66	102.66	0.76428								0	0	0	0.15158	1	38435	38435		14.838	2.5976	1		+		6317	19856	4339	4385	6155	6155					0.0843022202047905
DLEMAYITY	9	Unmodified	_DLEMAYITY_					0	0	0			REV__ENSG00000139304|ENST00000644991|PTPRQ	REV__ENSG00000139304|ENST00000644991|PTPRQ	MULTI-MSMS	A375_MHC_IP_R1	1	560.219482421875	2	559.757358	1117.50016	-0.47885	-0.00026804	-0.094679	-5.2997E-05	-0.57353	-0.00032104	559.7565989975292	60.057	0.40721	60.057	59.854	60.261	0					9	7	2	0	0	0	0.64808	1	21545	21545		11.64	0	1	600300	+		6318	19148	4340	4386	6156	6156					-0.053887354851212876
DLEPDRCYQ	9	Unmodified	_DLEPDRCYQ_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5;ENST00000506603.5_1_5:79034050-79057839:+|nuORF	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-MSMS	A375_MHC_IP_R2	2	569.66162109375	2	569.745313	1137.47607	-0.97159	-0.00055356	-2.9351	-0.0016722	-3.9067	-0.0022258	570.2442007669413	36.943	0.45559	37.714	37.513	37.968	0.7709					12	8	2	0	0	0	0.4867	1	13492	13492		20.454	1.1966	1	1273600			6319	6823	4341	4387	6157	6157					-0.08716575918811031
DLEQGSANVL	10	Unmodified	_DLEQGSANVL_					0	0	0			REV__ENSG00000163646|ENST00000327047|CLRN1	REV__ENSG00000163646|ENST00000327047|CLRN1	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1315307617188	2	523.261653	1044.50875	-0.82905	-0.00043381	0.61166	0.00032006	-0.21739	-0.00011375	523.2620865885909	30.261	0.45342	30.261	30.099	30.553	0					12	8	2	0	0	0	0.8528	1	9691	9691		16.149	0	1	2807000	+		6320	20395	4342	4388	6158	6158					-0.011720455242766548
DLEQLNYFRNQ	11	Unmodified	_DLEQLNYFRNQ_					0	0	0			REV__USH2A|p.G679R|1|0.4|ENSG00000042781|chr1:216251035-216251035|C/T|missense_variant	REV__USH2A|p.G679R|1|0.4|ENSG00000042781|chr1:216251035-216251035|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	721.2499389648438	2	720.349323	1438.68409	-0.59495	-0.00042858	-0.045957	-3.3105E-05	-0.64091	-0.00046168	720.349370115349	95.943	0.50652	95.943	95.665	96.171	0					24	9	3	0	0	0	0.73332	2	35248	35224;35248		5.7319	5.2969	1	6510900	+		6321	28962	4343	4389	6159;6160	6160					-0.017702507300555226
DLEQQCPTQVC	11	Unmodified	_DLEQQCPTQVC_					0	0	0			REV__ENST00000490362.1_1_2:217526523-217526805:+|nuORF	REV__ENST00000490362.1_1_2:217526523-217526805:+|nuORF	MSMS	A375_MHC_IP_R2	2	632.4691772460938	2	632.270838	1262.52712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.227	1	77.97	77.47	78.47	0.74293								0	0	0	0.16258	1	29326	29326		5.2969	1.3525	1		+		6322	24768	4344	4390	6161	6161					-0.09363994936234121
DLEQWIQERE	10	Unmodified	_DLEQWIQERE_					0	0	0		nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-MSMS	A375_MHC_IP_R1	1	673.7227172851562	2	673.322773	1344.63099	-0.71142	-0.00047902	0.29712	0.00020006	-0.4143	-0.00027896	673.3230215796527	64.968	1.1707	64.968	64.546	65.717	0					66	22	5	0	0	0	0.44858	1	23434	23434		31.268	2.7738	1	58225000			6323	7838	4345	4391	6162	6162					-0.02753628512709838
DLEQWIQERE	10	Unmodified	_DLEQWIQERE_					0	0	0		nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-MSMS	A375_MHC_IP_R2	2	673.7218017578125	2	673.322773	1344.63099	-0.64312	-0.00043303	-0.066404	-4.4712E-05	-0.70953	-0.00047774	673.3227491019946	64.219	0.96671	64.959	64.547	65.513	0.74023					59	18	5	0	0	0	0.54492	1	24276	24276		24.991	1.2012	1	57254000			6324	7838	4345	4391	6163	6163					-0.02753628512709838
DLEQWIQERE	10	Unmodified	_DLEQWIQERE_					0	0	0		nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	673.322773	1344.63099	-0.71142	-0.00047902	0.29712	0.00020006	-0.4143	-0.00027896	673.3230215796527	64.968	1.1707	64.968	64.546	65.717	0	0.0047591	0.00023948	NaN	31.268	66	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58225000			6325	7838	4345	4391							-0.02753628512709838
DLEQWIQERE	10	Unmodified	_DLEQWIQERE_					0	0	0		nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	673.322773	1344.63099	-0.64312	-0.00043303	-0.066404	-4.4712E-05	-0.70953	-0.00047774	673.3227491019946	64.219	0.96671	64.959	64.547	65.513	0.74023	-0.0047591	-0.00025006	NaN	31.268	59	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57254000			6326	7838	4345	4391							-0.02753628512709838
DLERANQTL	9	Unmodified	_DLERANQTL_					0	0	0		nc|ENSG00000085978|Q676U5-2|ATG16L1;ENSG00000085978|ENST00000392017|ATG16L1;ENST00000474148.5_1_2:234160473-234181699:+|nuORF;nc|ENSG00000085978|Q676U5-3|ATG16L1;ENST00000479942.5_1_2:234160473-234198706:+|nuORF	nc|ENSG00000085978|Q676U5-2|ATG16L1	nc|ENSG00000085978|Q676U5-2|ATG16L1	MSMS	A375_MHC_IP_R2	2	530.1902465820312	2	530.275095	1058.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.16	1	32.897	32.397	33.397	0.73692								0	0	0	0.1535	1	11418	11418		15.847	1.0089	1				6327	1822	4346	4392	6164	6164					0.008710630869245506
DLERMLEAH	9	Unmodified	_DLERMLEAH_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST;REV__nc|ENSG00000151914|Q03001-8|DST;REV__nc|ENSG00000151914|Q03001-3|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	A375_MHC_IP_R2	2	556.6577758789062	2	557.271498	1112.52844	-0.81202	-0.00045252	0.34335	0.00019134	-0.46867	-0.00026118	557.2715578201694	40.028	0.20316	40.803	40.676	40.879	0.77451					5	3	2	0	0	0	0.74412	1	14778	14778		10.074	9.3836	1	1093900	+		6328	19783;27289;27288	4347	4393	6165	6165					-0.02331992785161674
DLESEEMEI	9	Unmodified	_DLESEEMEI_					0	0	0			REV__nc|ENSG00000012048|P38398-8|BRCA1	REV__nc|ENSG00000012048|P38398-8|BRCA1	MSMS	A375_MHC_IP_R2	2	547.6887817382812	2	547.731537	1093.44852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.722	1	70.457	69.957	70.957	0.73421								0	0	0	0.15486	1	26424	26424		12.532	0	1		+		6329	16218	4348	4394	6166	6166					-0.094465239696774
DLESLAPECL	10	Unmodified	_DLESLAPECL_					0	0	0			REV__nc|ENSG00000121716|Q9UKJ0-3|PILRB	REV__nc|ENSG00000121716|Q9UKJ0-3|PILRB	MULTI-SECPEP	A375_MHC_IP_R2	2	544.6558837890625	2	545.260265	1088.50598	-0.75223	-0.00041016	-3.6459	-0.0019879	-4.3981	-0.0023981	545.258484013602	104.27	0.20531	105.03	104.9	105.11	0.76308					5	3	2	0	0	0	0.90853	1	39422	39422		10.824	1.4408	1	1002100	+		6330	27200	4349	4395	6167	6167					-0.03473636973444627
DLEVKIRDWYQ	11	Unmodified	_DLEVKIRDWYQ_					0	0	0		CON__P02533;ENSG00000186847|ENST00000167586|KRT14;CON__P08779;ENSG00000186832|ENST00000301653|KRT16;CON__Q9Z2K1;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;CON__Q3ZAW8;ENST00000414673.5_1_17:16734454-16736059:-|nuORF	CON__P02533;ENST00000414673.5_1_17:16734454-16736059:-|nuORF	ENST00000414673.5_1_17:16734454-16736059:-|nuORF	MSMS	A375_MHC_IP_R1	1	732.8242797851562	2	732.877716	1463.74088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.21	1	109.21	108.71	109.71	0								0	0	0	0.16302	1	40061	40061		2.9952	0	1			+	6331	580;11669	4350	4396	6168	6168					0.027557968265000454
DLEYELEAKSY	11	Unmodified	_DLEYELEAKSY_					0	0	0		CGNL1|p.H1054Y|1|0.34|ENSG00000128849|chr15:57528774-57528774|C/T|missense_variant	CGNL1|p.H1054Y|1|0.34|ENSG00000128849|chr15:57528774-57528774|C/T|missense_variant	CGNL1|p.H1054Y|1|0.34|ENSG00000128849|chr15:57528774-57528774|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	680.7191772460938	2	680.319365	1358.62418	-0.27907	-0.00018986	0.29613	0.00020146	0.017061	1.1607E-05	680.3198888545396	115.96	0.76253	115.96	115.58	116.34	0					20	14	2	0	0	0	0.72801	1	42549	42549		10.8	1.4164	1	2791000			6332	382	4351	4397	6169	6169					-0.0407898618393574
DLEYELEAKSY	11	Unmodified	_DLEYELEAKSY_					0	0	0		CGNL1|p.H1054Y|1|0.34|ENSG00000128849|chr15:57528774-57528774|C/T|missense_variant	CGNL1|p.H1054Y|1|0.34|ENSG00000128849|chr15:57528774-57528774|C/T|missense_variant	CGNL1|p.H1054Y|1|0.34|ENSG00000128849|chr15:57528774-57528774|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	680.7194213867188	2	680.319365	1358.62418	-0.45363	-0.00030861	0.011109	7.5578E-06	-0.44252	-0.00030105	680.3196890534381	115.44	0.6608	116.13	115.68	116.34	0.68999					16	12	2	0	0	0	0.99133	1	43441	43441		10.8	5.0677	1	2809200			6333	382	4351	4397	6170	6170					-0.0407898618393574
DLFCCPECD	9	Unmodified	_DLFCCPECD_					0	0	0		ENST00000547636.1_1_12:44915767-44917277:-|nuORF;nc|ENSG00000165973|Q92832-2|NELL1;ENSG00000165973|ENST00000357134|NELL1;nc|ENSG00000184613|Q99435-4|NELL2;ENSG00000184613|ENST00000429094|NELL2;nc|ENSG00000184613|Q99435-2|NELL2;nc|ENSG00000184613|Q99435-3|NELL2	ENST00000547636.1_1_12:44915767-44917277:-|nuORF	ENST00000547636.1_1_12:44915767-44917277:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	522.1235961914062	2	522.677196	1043.33984	-0.75734	-0.00039584	0.9752	0.00050972	0.21787	0.00011387	523.1789024710865	36.361	0.40704	37.131	36.901	37.308	0.7709					17	7	3	0	0	0	0.78348	1	13221	13221		4.3292	2.485	1	3103800			6334	7012	4352	4398	6171	6171					-0.18009729745313052
DLFCLRVW	8	Unmodified	_DLFCLRVW_					0	0	0			REV__ENST00000459741.5_1_21:45509461-45509599:+|nuORF	REV__ENST00000459741.5_1_21:45509461-45509599:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	526.6742553710938	2	526.273312	1050.53207	-0.47685	-0.00025096	2.4975	0.0013144	2.0206	0.0010634	526.2751580586976	64.943	0.45803	65.681	65.359	65.817	0.73812					15	8	2	0	0	0	0.76248	1	24642	24642		16.942	3.0362	1	1517100	+		6335	24954	4353	4399	6172	6172					0.008827217793395903
DLFDELRLFA	10	Unmodified	_DLFDELRLFA_					0	0	0			REV__ENSG00000160447|ENST00000291906|PKN3	REV__ENSG00000160447|ENST00000291906|PKN3	MULTI-MSMS	A375_MHC_IP_R2	2	619.7880859375	2	619.824421	1237.63429	-0.68337	-0.00042357	-2.0719	-0.0012842	-2.7553	-0.0017078	620.3238638258474	103.25	0.15154	104.01	103.89	104.04	0.76428					4	2	2	0	0	0	0.70496	1	39074	39074		10.074	1.3285	1	1458400	+		6336	20171	4354	4400	6173	6173					0.024976663319421277
DLFDEYANF	9	Unmodified	_DLFDEYANF_					0	0	0			REV__ENST00000507780.1_1_4:81256922-81257812:+|nuORF	REV__ENST00000507780.1_1_4:81256922-81257812:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	567.1675415039062	2	567.242929	1132.47131	-0.32864	-0.00018642	0.70613	0.00040054	0.37749	0.00021413	567.7440120968619	104.17	0.76276	104.94	104.65	105.41	0.76308					17	14	2	0	0	0	0.76827	1	39533	39533		6.7232	0	1	1634600	+		6337	22321	4355	4401	6174	6174					-0.08963136789907367
DLFGCQHDF	9	Unmodified	_DLFGCQHDF_					0	0	0			REV__ENSG00000152402|ENST00000526355|GUCY1A2	REV__ENSG00000152402|ENST00000526355|GUCY1A2	MULTI-MSMS	A375_MHC_IP_R1	1	541.1907348632812	2	541.224017	1080.43348	-0.6741	-0.00036484	1.4022	0.0007589	0.72809	0.00039406	541.2246093105473	87.529	0.56151	87.529	87.186	87.747	0					16	10	2	0	0	0	0.6898	1	32002	32002		7.9102	7.9102	1	821220	+		6338	19801	4356	4402	6175	6175					-0.10351926256362276
DLFHRLWHIMN	11	Unmodified	_DLFHRLWHIMN_					0	0	0		nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-2|DOCK4;ENST00000476846.1_7:111503332-111846439:-|nuORF;ENST00000468571.1_7:111617053-111644151:-|nuORF	nc|ENSG00000128512|Q8N1I0|DOCK4	nc|ENSG00000128512|Q8N1I0|DOCK4	MSMS	A375_MHC_IP_R2	2	741.4360961914062	2	741.377163	1480.73977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.059	1	90.791	90.291	91.291	0.7318								0	0	0	0.16334	1	34266	34266		1.3295	0.13619	1				6339	4139	4357	4403	6176	6176					0.018633039765745707
DLFKSLMYS	9	Unmodified	_DLFKSLMYS_					0	0	0		ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MSMS	A375_MHC_IP_R2	2	552.178466796875	2	552.275718	1102.53688	-0.6614	-0.00036527	2.4147	0.0013336	1.7533	0.00096831	552.7775270728079	84.743	0.20268	85.479	85.372	85.574	0.73602					5	3	2	0	0	0	0.57432	1	32221	32221		16.149	3.9084	1	1161100			6340	4468	4358	4404	6177	6177					-0.010284388685477097
DLFKYCIELHW	11	Unmodified	_DLFKYCIELHW_					0	0	0			REV__DNAH7|p.P2142L|1|0.53|ENSG00000118997|chr2:195872458-195872458|G/A|missense_variant	REV__DNAH7|p.P2142L|1|0.53|ENSG00000118997|chr2:195872458-195872458|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	489.6136779785156	3	489.576079	1465.70641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.553	1	56.553	56.053	57.053	0								0	0	0	0.16224	1	20262	20262		7.0371	4.6023	1		+		6341	16016	4359	4405	6178	6178					-0.007817425859911964
DLFKYCIELHW	11	Unmodified	_DLFKYCIELHW_					0	0	0			REV__DNAH7|p.P2142L|1|0.53|ENSG00000118997|chr2:195872458-195872458|G/A|missense_variant	REV__DNAH7|p.P2142L|1|0.53|ENSG00000118997|chr2:195872458-195872458|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	489.6445617675781	3	489.576079	1465.70641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.641	1	56.641	56.141	57.141	0								0	0	0	0.16161	1	20295	20295		10.315	5.5993	1		+		6342	16016	4359	4405	6179	6179					-0.007817425859911964
DLFLILQFVWH	11	Unmodified	_DLFLILQFVWH_					0	0	0		ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	MSMS	A375_MHC_IP_R2	2	716.0292358398438	2	715.89518	1429.77581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.11	1	120.64	120.14	121.14	0.5321								0	0	0	0.16191	1	45792	45792		8.7454	0	1				6343	7855	4360	4406	6180	6180					0.07811084425088666
DLFMNLMIK	9	Unmodified	_DLFMNLMIK_					0	0	0			REV__nc|ENSG00000138101|O60941-6|DTNB	REV__nc|ENSG00000138101|O60941-6|DTNB	MULTI-SECPEP	A375_MHC_IP_R1	1	562.65625	2	562.795763	1123.57697	-0.50461	-0.00028399	-0.71238	-0.00040093	-1.217	-0.00068492	562.79536168174	34.501	0.40485	34.501	34.303	34.708	0					10	7	2	0	0	0	0.76187	1	11439	11439		11.64	0	1	1385300	+		6344	19064	4361	4407	6181	6181					0.020127845303704817
DLFPILMRI	9	Unmodified	_DLFPILMRI_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	A375_MHC_IP_R1	1	559.810302734375	2	559.325545	1116.63654	-0.5245	-0.00029337	-0.20058	-0.00011219	-0.72508	-0.00040556	559.3254808847253	83.424	0.45883	83.424	83.125	83.583	0					10	8	2	0	0	0	0.69381	1	30432	30432		15.847	8.558	1	991000			6345	3688	4362	4408	6182	6182					0.08288423536077971
DLFQRSLSP	9	Unmodified	_DLFQRSLSP_					0	0	0		ENSG00000154415|ENST00000284601|PPP1R3A	ENSG00000154415|ENST00000284601|PPP1R3A	ENSG00000154415|ENST00000284601|PPP1R3A	MULTI-MSMS	A375_MHC_IP_R1	1	532.1822509765625	2	531.782556	1061.55056	-0.43768	-0.00023275	0.13854	7.3671E-05	-0.29914	-0.00015908	531.782609422454	71.44	0.40453	71.44	71.211	71.615	0					11	7	2	0	0	0	0.32092	1	25969	25969		29.082	2.8134	1	3388300			6346	6085	4363	4409	6183	6183					0.022245549549097632
DLFRDLEII	9	Unmodified	_DLFRDLEII_					0	0	0		ENSG00000141560|ENST00000269373|FN3KRP	ENSG00000141560|ENST00000269373|FN3KRP	ENSG00000141560|ENST00000269373|FN3KRP	MULTI-SECPEP	A375_MHC_IP_R1	1	567.2394409179688	2	567.313689	1132.61282	-0.24118	-0.00013682	0.016181	9.1797E-06	-0.225	-0.00012764	567.3137234702822	88.739	1.4745	88.739	88.052	89.526	0					55	28	3	0	0	0	0.24548	1	32527	32527		52.268	8.496	1	14423000			6347	5255	4364	4410	6184	6184					0.05182281303223135
DLFRVPFLR	9	Unmodified	_DLFRVPFLR_					0	0	0			REV__ENST00000546123.2_1_1:228362303-228363211:+|nuORF	REV__ENST00000546123.2_1_1:228362303-228363211:+|nuORF	MSMS	A375_MHC_IP_R1	1	581.9307250976562	2	581.840208	1161.66586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.81	1	115.81	115.31	116.31	0								0	0	0	0.15486	1	42473	42473		10.074	0.6908	1		+		6348	21668	4365	4411	6185	6185					0.0914970387655103
DLFSPFVGDS	10	Unmodified	_DLFSPFVGDS_					0	0	0		ENSG00000171763|ENST00000305560|SPATA5L1;nc|ENSG00000171763|Q9BVQ7-2|AFG2B	ENSG00000171763|ENST00000305560|SPATA5L1	ENSG00000171763|ENST00000305560|SPATA5L1	MSMS	A375_MHC_IP_R1	1	542.1900024414062	2	542.253297	1082.49204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.638	1	31.638	31.138	32.138	0								0	0	0	0.15332	1	10145	10145		10.074	0.72649	1				6349	7636	4366	4412	6186	6186					-0.04590546410236129
DLFTELKRY	9	Unmodified	_DLFTELKRY_					0	0	0		ENSG00000183098|ENST00000377047|GPC6	ENSG00000183098|ENST00000377047|GPC6	ENSG00000183098|ENST00000377047|GPC6	MULTI-SECPEP	A375_MHC_IP_R2	2	395.29248046875	3	395.548518	1183.62372	-0.61541	-0.00024342	0.05595	2.2131E-05	-0.55946	-0.00022129	395.5486000742533	52.633	0.50542	53.385	53.184	53.69	0.75225					16	9	2	0	0	0	0.76187	1	19816	19816		4.5289	0	1	1480500			6350	8466	4367	4413	6187	6187					0.03925683677539382
DLFTPEPHY	9	Unmodified	_DLFTPEPHY_					0	0	0		nc|ENSG00000188163|Q6J272-2|CIMIP2A;ENSG00000188163|ENST00000344774|FAM166A	nc|ENSG00000188163|Q6J272-2|CIMIP2A	nc|ENSG00000188163|Q6J272-2|CIMIP2A	MSMS	A375_MHC_IP_R2	2	559.732666015625	2	559.761289	1117.50803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.09	1	98.85	98.35	99.35	0.75977								0	0	0	0.15486	1	37219	37219		7.9102	0	1				6351	8890	4368	4414	6188	6188					-0.04602840173333789
DLFWVNYEEDF	11	Unmodified	_DLFWVNYEEDF_					0	0	0			REV__ENSG00000156395|ENST00000369701|SORCS3	REV__ENSG00000156395|ENST00000369701|SORCS3	MULTI-SECPEP	A375_MHC_IP_R2	2	492.4775695800781	3	492.882114	1475.62451	-0.31518	-0.00015535	-0.20006	-9.8605E-05	-0.51524	-0.00025395	493.21725538594865	44.009	0.45421	44.778	44.48	44.934	0.7691					12	8	2	0	0	0	1.0004	1	16409	16409		0.40827	0	1	785330	+		6352	19978	4369	4415	6189	6189					-0.09427566464114534
DLFYGDFFG	9	Unmodified	_DLFYGDFFG_					0	0	0		nc|ENSG00000119125|Q9Y2T3-2|GDA;ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA	nc|ENSG00000119125|Q9Y2T3-2|GDA	nc|ENSG00000119125|Q9Y2T3-2|GDA	MULTI-SECPEP	A375_MHC_IP_R2	2	540.6607666015625	2	540.737283	1079.46001	-0.99155	-0.00053617	-1.192	-0.00064458	-2.1836	-0.0011808	540.7367941514593	41.488	0.81379	42.262	41.845	42.659	0.77451					31	15	3	0	0	0	0.74651	1	15527	15527		4.756	2.1785	1	1780500			6353	3574	4370	4416	6190	6190					-0.07653914093384628
DLGAAGSAYEP	11	Unmodified	_DLGAAGSAYEP_					0	0	0			REV__ENSG00000164107|ENST00000359562|HAND2	REV__ENSG00000164107|ENST00000359562|HAND2	MULTI-MSMS	A375_MHC_IP_R1	1	526.1405639648438	2	525.740554	1049.46655	-0.49861	-0.00026214	-0.58636	-0.00030827	-1.085	-0.00057041	525.74055042258	60.827	0.5095	60.827	60.514	61.024	0					16	9	2	0	0	0	0.67989	1	21948	21948		17.113	0.1706	1	1098200	+		6354	20452	4371	4417	6191	6191					-0.05620020932678926
DLGAAGSAYEP	11	Unmodified	_DLGAAGSAYEP_					0	0	0			REV__ENSG00000164107|ENST00000359562|HAND2	REV__ENSG00000164107|ENST00000359562|HAND2	MULTI-MATCH	A375_MHC_IP_R2	2		2	525.740554	1049.46655	-0.81186	-0.00042683	-0.55996	-0.00029439	-1.3718	-0.00072122	525.7406436077955	60.098	0.50682	60.845	60.501	61.008	0.74714	0.0091192	1.41E-05	NaN	17.113	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1456000	+		6355	20452	4371	4417							-0.05620020932678926
DLGALRLEV	9	Unmodified	_DLGALRLEV_					0	0	0			REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B	REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B	MULTI-SECPEP	A375_MHC_IP_R2	2	492.6975402832031	2	493.287474	984.560395	-0.45134	-0.00022264	-3.8005	-0.0018748	-4.2519	-0.0020974	493.2848709469215	73.533	0.30489	74.268	74.091	74.396	0.73541					7	5	2	0	0	0	0.69507	1	27893	27893		9.3831	2.0939	1	320080	+		6356	16901	4372	4418	6192	6192					0.06749742960278127
DLGAMEETFN	10	Unmodified	_DLGAMEETFN_					0	0	0			REV__MYH2|p.L984F|1|0.05|ENSG00000125414|chr17:10529731-10529731|G/A|missense_variant	REV__MYH2|p.L984F|1|0.05|ENSG00000125414|chr17:10529731-10529731|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	563.5814819335938	2	563.739696	1125.46484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.872	1	84.872	84.372	85.372	0								0	0	0	0.15038	1	31096	31096		17.113	0.1706	1		+		6357	27059	4373	4419	6193	6193					-0.0928739801292977
DLGCCGGH	8	Unmodified	_DLGCCGGH_					0	0	0		ENST00000491449.5_1_22:50658476-50664613:-|nuORF	ENST00000491449.5_1_22:50658476-50664613:-|nuORF	ENST00000491449.5_1_22:50658476-50664613:-|nuORF	MSMS	A375_MHC_IP_R2	2	381.2597961425781	2	381.138898	760.263244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.416	1	25.06	24.56	25.56	0.64368								0	0	0	0.16876	1	8014	8014		2.5775	1.7838	1				6358	12661	4374	4420	6194	6194					-0.12647740459624401
DLGDLSRFLV	10	Unmodified	_DLGDLSRFLV_					0	0	0		nc|ENSG00000185615|Q13087-2|PDIA2;ENSG00000185615|ENST00000219406|PDIA2	nc|ENSG00000185615|Q13087-2|PDIA2	nc|ENSG00000185615|Q13087-2|PDIA2	MULTI-SECPEP	A375_MHC_IP_R2	2	567.7090454101562	2	567.811313	1133.60807	-0.26987	-0.00015324	2.1798	0.0012377	1.91	0.0010845	567.8128400999008	91.058	0.5556	91.793	91.616	92.172	0.7345					14	10	2	0	0	0	0.92227	1	34654	34654		13.042	8.1455	1	1220800			6359	8678	4375	4421	6195	6195					0.04661397160475644
DLGEATLKIVG	11	Unmodified	_DLGEATLKIVG_					0	0	0		nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;ENST00000508343.1_1_5:14498325-14498811:+|nuORF;nc|ENSG00000038382|O75962-3|TRIO	nc|ENSG00000038382|O75962-2|TRIO	nc|ENSG00000038382|O75962-2|TRIO	MULTI-MSMS	A375_MHC_IP_R2	2	372.9482727050781	3	372.548406	1114.62339	0.31064	0.00011573	-0.19044	-7.0948E-05	0.1202	4.4782E-05	372.54829186992845	65.459	1.2722	66.197	65.817	67.089	0.73811					75	24	6	0	0	0	0.73378	1	24977	24977		2.4348	0	1	65281000			6360	1153	4376	4422	6196	6196					0.07066263957653973
DLGEEGERDC	10	Unmodified	_DLGEEGERDC_					0	0	0		ENST00000607510.1_1_3:44379447-44379723:-|nuORF	ENST00000607510.1_1_3:44379447-44379723:-|nuORF	ENST00000607510.1_1_3:44379447-44379723:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	561.71484375	2	561.722035	1121.42952	-0.4584	-0.00025749	-0.28007	-0.00015732	-0.73847	-0.00041481	562.2213628861476	93.865	0.15201	93.865	93.789	93.941	0					4	2	2	0	0	0	0.71245	1	34498	34498		6.7232	1.9672	1	730450			6361	13921	4377	4423	6197	6197					-0.12634060540722203
DLGEEWARF	9	Unmodified	_DLGEEWARF_					0	0	0			REV__ENSG00000140511|ENST00000359595|HAPLN3	REV__ENSG00000140511|ENST00000359595|HAPLN3	MULTI-SECPEP	A375_MHC_IP_R2	2	562.13525390625	2	561.764363	1121.51417	-0.56316	-0.00031637	1.2992	0.00072987	0.73608	0.0004135	561.7649961151895	103.43	0.1523	104.2	104.09	104.24	0.76428					4	2	2	0	0	0	0.75466	1	39147	39147		7.9102	3.5809	1	358560	+		6362	19219	4378	4424	6198	6198					-0.04172321941814516
DLGGGRLL	8	Unmodified	_DLGGGRLL_					0	0	0			REV__nc|ENSG00000115705|P07202-4|TPO	REV__nc|ENSG00000115705|P07202-4|TPO	MULTI-SECPEP	A375_MHC_IP_R2	2	401.1347351074219	2	400.734877	799.455202	0.028145	1.1279E-05	-0.11088	-4.4433E-05	-0.082734	-3.3154E-05	400.7347253362594	63.565	0.50924	64.306	63.987	64.496	0.74022					15	9	2	0	0	0	0.84748	1	24126	24126		21.747	0	1	1250100	+		6363	17908	4379	4425	6199	6199					0.047452465545120504
DLGGKPDCACI	11	Unmodified	_DLGGKPDCACI_					0	0	0			REV__ENST00000324731.7_1_9:34917810-34918290:+|nuORF	REV__ENST00000324731.7_1_9:34917810-34918290:+|nuORF	MSMS	A375_MHC_IP_R1	1	546.1819458007812	2	546.246634	1090.47872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.22	1	109.22	108.72	109.72	0								0	0	0	0.14837	1	40063	40063		21.537	6.6987	1		+		6364	23592	4380	4426	6200	6200					-0.06290443785496791
DLGKTRIPY	9	Unmodified	_DLGKTRIPY_					0	0	0		RNF17|p.E1560K|1|0.32|ENSG00000132972|chr13:24877091-24877091|G/A|missense_variant	RNF17|p.E1560K|1|0.32|ENSG00000132972|chr13:24877091-24877091|G/A|missense_variant	RNF17|p.E1560K|1|0.32|ENSG00000132972|chr13:24877091-24877091|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	355.4598388671875	3	354.869591	1061.58694	-0.4456	-0.00015813	0.18588	6.5965E-05	-0.25971	-9.2165E-05	354.8696282897833	49.192	0.80947	49.949	49.639	50.449	0.75737					46	15	5	0	0	0	0.65748	1	18412	18412		10.8	0	1	18247000			6365	29084	4381	4427	6201	6201					0.058614318515992636
DLGLLPKG	8	Unmodified	_DLGLLPKG_					0	0	0		NCOA5|p.S449Afs*74|1|0.08|ENSG00000124160|chr20:46062695-46062695|T/-|frameshift_variant	NCOA5|p.S449Afs*74|1|0.08|ENSG00000124160|chr20:46062695-46062695|T/-|frameshift_variant	NCOA5|p.S449Afs*74|1|0.08|ENSG00000124160|chr20:46062695-46062695|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	407.1473388671875	2	406.747453	811.480354	-0.35621	-0.00014489	0.25707	0.00010456	-0.099136	-4.0323E-05	406.74762159370147	53.236	0.60869	53.236	52.946	53.555	0					24	11	3	0	0	0	0.60242	1	18956	18956		30.637	0	1	3695200			6366	14984	4382	4428	6202	6202					0.06707301357084816
DLGLLPKG	8	Unmodified	_DLGLLPKG_					0	0	0		NCOA5|p.S449Afs*74|1|0.08|ENSG00000124160|chr20:46062695-46062695|T/-|frameshift_variant	NCOA5|p.S449Afs*74|1|0.08|ENSG00000124160|chr20:46062695-46062695|T/-|frameshift_variant	NCOA5|p.S449Afs*74|1|0.08|ENSG00000124160|chr20:46062695-46062695|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	406.2678527832031	2	406.747453	811.480354	-0.42145	-0.00017142	0.069589	2.8305E-05	-0.35186	-0.00014312	406.74747537481176	52.472	0.5061	53.224	52.983	53.489	0.75225					18	9	2	0	0	0	0.84294	1	19787	19787		30.637	0	1	4485900			6367	14984	4382	4428	6203	6203					0.06707301357084816
DLGLLSPQV	9	Unmodified	_DLGLLSPQV_					0	0	0		PIGV|p.F374L|1|0.61|ENSG00000060642|chr1:26795156-26795156|C/A|missense_variant	PIGV|p.F374L|1|0.61|ENSG00000060642|chr1:26795156-26795156|C/A|missense_variant	PIGV|p.F374L|1|0.61|ENSG00000060642|chr1:26795156-26795156|C/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	471.66851806640625	2	471.26875	940.522947	-0.54529	-0.00025698	0.15043	7.0895E-05	-0.39486	-0.00018608	471.2687675163327	73.603	0.91875	74.339	73.836	74.754	0.73541					25	17	2	0	0	0	0.029064	1	27925	27925		75.761	0.83183	1	2888200			6368	15173	4383	4429	6204	6204					0.05030651694664812
DLGLLSPQV	9	Unmodified	_DLGLLSPQV_					0	0	0		PIGV|p.F374L|1|0.61|ENSG00000060642|chr1:26795156-26795156|C/A|missense_variant	PIGV|p.F374L|1|0.61|ENSG00000060642|chr1:26795156-26795156|C/A|missense_variant	PIGV|p.F374L|1|0.61|ENSG00000060642|chr1:26795156-26795156|C/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	472.6904296875	2	471.26875	940.522947	-0.47961	-0.00022603	-0.11791	-5.5565E-05	-0.59752	-0.00028159	471.2687197624091	84.608	1.4245	85.344	84.916	86.341	0.73602					61	27	4	0	0	0	0.2002	1	32190	32190		37.974	1.847	1	27599000			6369	15173	4383	4429	6205	6205					0.05030651694664812
DLGNNEIYN	9	Unmodified	_DLGNNEIYN_					0	0	0		nc|ENSG00000137269|Q9BTT6-2|LRRC1;ENSG00000137269|ENST00000370888|LRRC1	nc|ENSG00000137269|Q9BTT6-2|LRRC1	nc|ENSG00000137269|Q9BTT6-2|LRRC1	MULTI-MSMS	A375_MHC_IP_R2	2	526.6920776367188	2	526.238178	1050.4618	-0.75754	-0.00039865	-0.10913	-5.7428E-05	-0.86667	-0.00045607	526.2381861667878	60.694	0.96388	61.439	61.006	61.97	0.74503					42	18	3	0	0	0	0.61998	1	23128	23128		13.906	1.3745	1	9255000			6370	4873	4384	4430	6206	6206					-0.06140905075426417
DLGNPQKSSW	10	Unmodified	_DLGNPQKSSW_					0	0	0		ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3;nc|ENSG00000165323|Q8TDW7-2|FAT3	ENSG00000165323|ENST00000525166|FAT3	ENSG00000165323|ENST00000525166|FAT3	MULTI-SECPEP	A375_MHC_IP_R1	1	377.2649841308594	3	377.852489	1130.53564	0.38332	0.00014484	0.032078	1.2121E-05	0.41539	0.00015696	377.852469001079	31.523	0.40593	31.523	31.363	31.769	0					11	7	2	0	0	0	0.93578	1	10081	10081		8.9762	0.82072	1	1313300			6371	6942	4385	4431	6207	6207					-0.024409369130808045
DLGQVKSSRGY	11	Unmodified	_DLGQVKSSRGY_					0	0	0			REV__nc|ENSG00000166016|Q8N961-2|ABTB2	REV__nc|ENSG00000166016|Q8N961-2|ABTB2	MULTI-SECPEP	A375_MHC_IP_R2	2	403.256103515625	3	403.878926	1208.61495	-0.045724	-1.8467E-05	2.1393	0.00086401	2.0936	0.00084554	404.5496133173903	27.951	0.2544	28.63	28.502	28.757	0.67857					9	4	3	0	0	0	0.99424	1	9575	9575		2.2527	0.66045	1	1235500	+		6372	20645	4386	4432	6208	6208					0.018987100410413404
DLGRINFKD	9	Unmodified	_DLGRINFKD_					0	0	0		RAB11FIP4|p.P63S|2|0.23|ENSG00000131242|chr17:31431840-31431840|C/T|missense_variant;ENSG00000131242|ENST00000621161|RAB11FIP4	RAB11FIP4|p.P63S|2|0.23|ENSG00000131242|chr17:31431840-31431840|C/T|missense_variant	RAB11FIP4|p.P63S|2|0.23|ENSG00000131242|chr17:31431840-31431840|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	539.6878051757812	2	539.288005	1076.56146	-1.2265	-0.00066144	0.59148	0.00031898	-0.63503	-0.00034246	539.2883763878449	59.718	0.75677	60.465	59.996	60.753	0.74714					31	14	3	0	0	0	0.60917	1	22572	22572		25.399	2.663	1	9580200			6373	4317	4387	4433	6209	6209					0.026239573292059504
DLGTFYREF	9	Unmodified	_DLGTFYREF_					0	0	0		nc|ENSG00000175224|O75143|ATG13;ENSG00000175224|ENST00000683050|ATG13;nc|ENSG00000175224|O75143-4|ATG13;nc|ENSG00000175224|O75143-2|ATG13	nc|ENSG00000175224|O75143|ATG13	nc|ENSG00000175224|O75143|ATG13	MULTI-MSMS	A375_MHC_IP_R1	1	574.2000122070312	2	574.274564	1146.53457	-0.33782	-0.000194	1.246	0.00071555	0.90819	0.00052155	574.276308794884	65.569	0.96738	65.569	65.055	66.022	0					24	18	2	0	0	0	0.4867	1	23867	23867		20.454	2.3073	1	916320			6374	7944	4388	4434	6210	6210					-0.03283151282016661
DLGTGRVRIL	10	Unmodified	_DLGTGRVRIL_					0	0	0			REV__ENSG00000198753|ENST00000361971|PLXNB3	REV__ENSG00000198753|ENST00000361971|PLXNB3	MULTI-SECPEP	A375_MHC_IP_R1	1	549.7083129882812	2	550.332747	1098.65094	-0.58229	-0.00032045	-0.042948	-2.3636E-05	-0.62524	-0.00034409	550.3328213829203	25.434	0.3067	25.434	25.306	25.613	0					6	5	2	0	0	0	0.93578	1	7367	7367		6.2058	2.6093	1	1819400	+		6375	22411	4389	4435	6211	6211					0.10556212008555121
DLGTLLSNMMF	11	Unmodified	_DLGTLLSNMMF_					0	0	0			REV__ENST00000567982.5_1_16:57499867-57500092:+|nuORF	REV__ENST00000567982.5_1_16:57499867-57500092:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	414.27532958984375	3	414.535003	1240.58318	0.15276	6.3322E-05	0.20754	8.6034E-05	0.3603	0.00014936	414.53503630898683	30.96	0.50786	30.96	30.703	31.211	0					19	9	3	0	0	0	0.98748	1	9885	9885		2.4348	0	1	2429700	+		6376	26256	4390	4436	6212	6212					-0.02748742028779816
DLHDQGYSRCH	11	Unmodified	_DLHDQGYSRCH_					0	0	0			REV__ENST00000461757.1_1_2:27423306-27424138:-|nuORF	REV__ENST00000461757.1_1_2:27423306-27424138:-|nuORF	MSMS	A375_MHC_IP_R2	2	665.9265747070312	2	665.783293	1329.55203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.628	1	80.372	79.872	80.872	0.74474								0	0	0	0.16302	1	30219	30219		2.9952	0.26005	1		+		6377	19059	4391	4437	6213	6213					-0.09956179018627154
DLHEHPLY	8	Unmodified	_DLHEHPLY_					0	0	0		nc|ENSG00000130305|Q96P11-5|NSUN5;nc|ENSG00000130305|Q96P11|NSUN5;ENSG00000130305|ENST00000438747|NSUN5;nc|ENSG00000130305|Q96P11-4|NSUN5;nc|ENSG00000290831|Q63ZY6-2|NSUN5P2;nc|ENSG00000290831|Q63ZY6-5|NSUN5P2;nc|ENSG00000290831|Q63ZY6-6|NSUN5P2;nc|ENSG00000290831|Q63ZY6|NSUN5P2;nc|ENSG00000130305|Q96P11-3|NSUN5;ENST00000471461.5_1_7:72717735-72721871:-|nuORF;ENST00000444583.6_1_7:72418925-72425243:-|nuORF;ENST00000485741.6_1_7:72418925-72423926:-|nuORF;ENST00000388955.8_1_7:72418925-72423926:-|nuORF	nc|ENSG00000130305|Q96P11-5|NSUN5	nc|ENSG00000130305|Q96P11-5|NSUN5	MSMS	A375_MHC_IP_R2	2	512.1790771484375	2	512.248349	1022.48214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.895	1	69.63	69.13	70.13	0.73511								0	0	0	0.16876	1	26105	26105		19.439	1.304	1				6378	4234	4392	4438	6214	6214					-0.02819689624948296
DLHEQSYV	8	Unmodified	_DLHEQSYV_					0	0	0			REV__tr|U7T457|U7T457_FUSNUTryptophanaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00262PE=3SV=1	REV__tr|U7T457|U7T457_FUSNUTryptophanaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00262PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	495.65771484375	2	495.729989	989.445425	-0.50625	-0.00025096	-0.20985	-0.00010403	-0.7161	-0.00035499	495.7300255285717	65.591	0.56268	65.591	65.257	65.819	0					16	10	2	0	0	0	0.77123	2	23667	23667;23812		14.582	2.0501	1	1820300	+		6379	28792	4393	4439	6215;6216	6215					-0.049719862415145144
DLHGQLDLLA	10	Unmodified	_DLHGQLDLLA_					0	0	0			REV__ENST00000493523.2_1_2:73302651-73316730:-|nuORF	REV__ENST00000493523.2_1_2:73302651-73316730:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	365.2607727050781	3	365.532868	1093.57677	-0.33153	-0.00012119	-0.28631	-0.00010466	-0.61785	-0.00022584	365.53268062095293	24.635	1.1178	25.278	24.755	25.873	0.64368					27	21	2	0	0	0	0.69306	1	8290	8290		8.4443	0.49891	1	8035900	+		6380	18870	4394	4440	6217	6217					0.03372824126381602
DLHHDVNRF	9	Unmodified	_DLHHDVNRF_					0	0	0		nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN	nc|ENSG00000088812|O75882-3|ATRN	nc|ENSG00000088812|O75882-3|ATRN	MULTI-SECPEP	A375_MHC_IP_R2	2	384.2960205078125	3	384.856345	1151.5472	-0.57604	-0.00022169	0.56583	0.00021776	-0.010216	-3.9317E-06	384.8565945565559	28.454	0.25393	29.132	28.96	29.214	0.67857					7	4	2	0	0	0	0.75466	1	9862	9862		0.96228	0	1	2957300			6381	1897	4395	4441	6218	6218					-0.022506950991100894
DLHKRQEHFKA	11	Unmodified	_DLHKRQEHFKA_					0	0	0			REV__MYOCD|p.E47K|2|0.49|ENSG00000141052|chr17:12715536-12715536|G/A|missense_variant	REV__MYOCD|p.E47K|2|0.49|ENSG00000141052|chr17:12715536-12715536|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	705.7759399414062	2	704.875842	1407.73713	-0.59196	-0.00041726	-0.87558	-0.00061718	-1.4675	-0.0010344	704.8751492412795	55.368	0.55972	55.368	55.075	55.635	0					16	10	2	0	0	0	0.7342	1	19872	19872		4.897	1.6157	1	1754500	+		6382	27074	4396	4442	6219	6219					0.04957171843261676
DLHKWRKWVE	10	Unmodified	_DLHKWRKWVE_					0	0	0			REV__nc|ENSG00000185186|P59037|LINC00313	REV__nc|ENSG00000185186|P59037|LINC00313	MSMS	A375_MHC_IP_R2	2	698.92578125	2	698.877853	1395.74115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.551	1	97.307	96.807	97.807	0.75586								0	0	0	0.15451	1	36656	36656		6.2058	1.3088	1		+		6383	27411	4397	4443	6220	6220					0.059112613369961764
DLHLKAQNF	9	Unmodified	_DLHLKAQNF_					0	0	0		nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0|DOCK4	nc|ENSG00000128512|Q8N1I0|DOCK4	MULTI-MSMS	A375_MHC_IP_R1	1	543.690185546875	2	543.290548	1084.56654	-0.25054	-0.00013612	-0.30502	-0.00016571	-0.55556	-0.00030183	543.2900833608677	48.286	0.60759	48.286	47.97	48.577	0					23	11	3	0	0	0	0.064406	1	17016	17016		58.679	4.846	1	3638400			6384	4139	4398	4444	6221	6221					0.027642611918054172
DLHPKRRRE	9	Unmodified	_DLHPKRRRE_					0	0	0			REV__ENSG00000229549|ENST00000287721|TSPY8	REV__ENSG00000229549|ENST00000287721|TSPY8	MULTI-SECPEP	A375_MHC_IP_R2	2	603.630615234375	2	603.844345	1205.67414	-0.37297	-0.00022522	-3.9172	-0.0023654	-4.2901	-0.0025906	604.3412556336787	92.493	0.60719	93.232	92.734	93.341	0.73902					12	11	2	0	0	0	0.76187	1	35068	35068		11.64	4.3511	1	2080800	+		6385	22739	4399	4445	6222	6222					0.07952650845891185
DLHRQQYSY	9	Unmodified	_DLHRQQYSY_					0	0	0		ENSG00000197147|ENST00000330947|LRRC8B	ENSG00000197147|ENST00000330947|LRRC8B	ENSG00000197147|ENST00000330947|LRRC8B	MULTI-SECPEP	A375_MHC_IP_R1	1	404.6213073730469	3	403.859755	1208.55744	-0.24543	-9.9118E-05	-0.92153	-0.00037217	-1.167	-0.00047129	403.8598832292953	44.282	0.30855	44.282	44.061	44.37	0					7	5	2	0	0	0	0.76827	1	15380	15380		7.1017	1.3183	1	728920			6386	9122	4400	4446	6223	6223					-0.03850132164529896
DLHSGAGTLRP	11	Unmodified	_DLHSGAGTLRP_					0	0	0		ENSG00000179564|ENST00000316436|LSMEM2	ENSG00000179564|ENST00000316436|LSMEM2	ENSG00000179564|ENST00000316436|LSMEM2	MULTI-SECPEP	A375_MHC_IP_R1	1	562.8937377929688	2	562.296362	1122.57817	-0.27894	-0.00015685	1.7023	0.00095718	1.4233	0.00080033	562.2968263108004	78.822	0.96643	78.822	78.556	79.522	0					23	18	2	0	0	0	0.95135	1	28712	28712		7.609	3.6646	1	2098300			6387	8239	4401	4447	6224	6224					0.02178458215144019
DLHVYVSVL	9	Unmodified	_DLHVYVSVL_					0	0	0			REV__nc|ENSG00000173567|Q8IZF5-2|ADGRF3	REV__nc|ENSG00000173567|Q8IZF5-2|ADGRF3	MULTI-SECPEP	A375_MHC_IP_R2	2	522.6318359375	2	522.78985	1043.56515	-0.69514	-0.00036341	-0.2351	-0.00012291	-0.93024	-0.00048632	522.7900752291204	72.445	0.50792	73.18	73.022	73.53	0.73541					13	9	2	0	0	0	0.65246	1	27501	27501		6.7232	5.0705	1	1824000	+		6388	21232	4402	4448	6225	6225					0.04510627103036313
DLIARIQEI	9	Unmodified	_DLIARIQEI_					0	0	0			REV__tr|U7SWV0|U7SWV0_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01181PE=4SV=1	REV__tr|U7SWV0|U7SWV0_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01181PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	536.1497192382812	2	535.813856	1069.61316	-1.0191	-0.00054604	-0.24619	-0.00013191	-1.2653	-0.00067795	535.8139117971442	71.051	0.96175	71.785	71.453	72.414	0.73421					60	18	4	0	0	0	0.16764	1	27050	27050		51.63	2.0755	1	32277000	+		6389	28610	4403	4449	6226	6226					0.08113701023080466
DLIECYTF	8	Unmodified	_DLIECYTF_					0	0	0			REV__tr|U7SHB3|U7SHB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02186PE=4SV=1	REV__tr|U7SHB3|U7SHB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02186PE=4SV=1	MSMS	A375_MHC_IP_R1	1	502.1899719238281	2	502.225694	1002.43683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.333	1	36.333	35.833	36.833	0								0	0	0	0.16876	1	12154	12154		9.3474	0.75416	1		+		6390	28206	4404	4450	6227	6227					-0.06428676202358474
DLIKHFRKYHL	11	Unmodified	_DLIKHFRKYHL_					0	0	0		nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;ENSG00000104447|ENST00000395715|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	MSMS	A375_MHC_IP_R2	2	735.2996826171875	2	735.422428	1468.8303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.89	1	110.64	110.14	111.14	0.74684								0	0	0	0.16338	1	41462	41462		2.7352	1.6637	1				6391	2514	4405	4451	6228	6228					0.11464096296526805
DLILLLLQLIK	11	Unmodified	_DLILLLLQLIK_					0	0	0			REV__ENST00000462957.1_1_6:170858142-170858184:-|nuORF	REV__ENST00000462957.1_1_6:170858142-170858184:-|nuORF	MSMS	A375_MHC_IP_R1	1	647.7477416992188	2	647.939057	1293.86356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.405	1	81.405	80.905	81.905	0								0	0	0	0.16353	1	29747	29747		0.35063	0.043601	1		+		6392	24996	4406	4452	6229	6229					0.22838285295847527
DLILLVWQV	9	Unmodified	_DLILLVWQV_					0	0	0		ENST00000251366.7_1_16:68266662-68269948:-|nuORF;ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2	ENST00000251366.7_1_16:68266662-68269948:-|nuORF	ENST00000251366.7_1_16:68266662-68269948:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	550.2311401367188	2	549.831517	1097.64848	-0.83467	-0.00045893	0.14354	7.8923E-05	-0.69113	-0.00038	549.8315018455713	135.92	0.87123	135.92	135.74	136.61	0					29	16	3	0	0	0	0.053904	1	52375	52375		56.177	0	1	39343000			6393	2419	4407	4453	6230	6230					0.10356363550909009
DLILPCAHSF	10	Unmodified	_DLILPCAHSF_					0	0	0		ENSG00000110315|ENST00000265981|RNF141	ENSG00000110315|ENST00000265981|RNF141	ENSG00000110315|ENST00000265981|RNF141	MULTI-SECPEP	A375_MHC_IP_R2	2	558.6318969726562	2	558.281334	1114.54812	-1.0707	-0.00059773	-1.9836	-0.0011074	-3.0543	-0.0017052	558.2816390570454	22.321	0.2045	22.941	22.795	23	0.61932					5	3	2	0	0	0	0.9269	1	7074	7074		3.5965	0	1	524230			6394	2927	4408	4454	6231	6231					-0.004576167744289705
DLILRLTRV	9	Unmodified	_DLILRLTRV_					0	0	0		ENST00000520311.5_1_8:101542042-101545474:-|nuORF	ENST00000520311.5_1_8:101542042-101545474:-|nuORF	ENST00000520311.5_1_8:101542042-101545474:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	366.9263916015625	3	366.904636	1097.69208	0.27241	9.9948E-05	-0.57293	-0.00021021	-0.30052	-0.00011026	366.9043582978474	25.105	0.81276	25.105	24.749	25.562	0					29	15	3	0	0	0	0.73141	1	7187	7187		4.1895	0.60244	1	7036900			6395	12991	4409	4455	6232	6232					0.14713973048037587
DLILYSSV	8	Unmodified	_DLILYSSV_					0	0	0		ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	MSMS	A375_MHC_IP_R2	2	455.16351318359375	2	455.250026	908.485499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.826	1	68.561	68.061	69.061	0.73511								0	0	0	0.16876	1	25702	25702		12.532	1.4171	1				6396	1868	4410	4456	6233	6233					0.027595604290468145
DLINGDEDRVV	11	Unmodified	_DLINGDEDRVV_					0	0	0			REV__nc|ENSG00000150760|Q14185|DOCK1	REV__nc|ENSG00000150760|Q14185|DOCK1	MULTI-MSMS	A375_MHC_IP_R1	1	415.6426086425781	3	415.542091	1243.60444	0.50767	0.00021096	2.531	0.0010517	3.0387	0.0012627	415.5423648481322	42.887	0.71268	42.887	42.638	43.351	0					36	13	4	0	0	0	0.72964	1	14926	14926		9.2438	1.7667	1	3430900	+		6397	19727	4411	4457	6234	6234					-0.007613174040670856
DLINHYVVVF	10	Unmodified	_DLINHYVVVF_					0	0	0		nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;ENST00000465814.5_1_11:72396711-72407721:-|nuORF;nc|ENSG00000186635|Q96P48-5|ARAP1;ENST00000546293.1_1_11:72406726-72408040:-|nuORF	nc|ENSG00000186635|Q96P48-3|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	406.25933837890625	3	406.888763	1217.64446	-0.34248	-0.00013935	2.4061	0.000979	2.0636	0.00083965	406.88981755811517	34.369	0.3041	34.369	34.253	34.557	0					8	5	2	0	0	0	0.92957	1	11319	11319		3.3196	0.47636	1	1100600			6398	8766	4412	4458	6235	6235					0.044342740571892136
DLITGHFLV	9	Unmodified	_DLITGHFLV_					0	0	0			REV__ENST00000303521.10_1_15:76673691-77134263:-|nuORF	REV__ENST00000303521.10_1_15:76673691-77134263:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	508.16754150390625	2	507.784567	1013.55458	-0.90987	-0.00046202	0.34664	0.00017602	-0.56323	-0.000286	507.78463609284245	72.312	0.55731	73.047	72.821	73.379	0.73541					13	10	2	0	0	0	0.60012	1	27521	27521		18.135	1.1927	1	780340	+		6399	19208	4413	4459	6236	6236					0.04834644448612835
DLIVKTQWPWY	11	Unmodified	_DLIVKTQWPWY_					0	0	0			REV__nc|ENSG00000140043|Q8N8N7-2|PTGR2	REV__nc|ENSG00000140043|Q8N8N7-2|PTGR2	MSMS	A375_MHC_IP_R1	1	483.6210632324219	3	483.590605	1447.74999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.675	1	74.675	74.175	75.175	0								0	0	0	0.16305	1	27201	27201		2.8433	0.4085	1		+		6400	19192	4414	4460	6237	6237					0.044021901828045884
DLKACTKGDSR	11	Unmodified	_DLKACTKGDSR_					0	0	0			REV__nc|ENSG00000132561|O00339-4|MATN2	REV__nc|ENSG00000132561|O00339-4|MATN2	MSMS	A375_MHC_IP_R2	2	398.5902099609375	3	398.536283	1192.58702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.756	1	37.527	37.027	38.027	0.7709								0	0	0	0.16138	1	13418	13418		6.6599	0	1		+		6401	18663	4415	4461	6238	6238					-0.0015693621071477537
DLKELKQLLY	10	Unmodified	_DLKELKQLLY_					0	0	0		tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	421.9833068847656	3	421.583339	1261.72819	-0.031143	-1.3129E-05	0.44512	0.00018765	0.41397	0.00017452	421.5834676998167	68.684	0.86235	68.684	68.361	69.224	0					46	16	5	0	0	0	0.037053	1	24863	24863		60.899	19.552	1	21415000			6402	29597	4416	4462	6239	6239					0.10779385434238975
DLKELLSLGL	10	Unmodified	_DLKELLSLGL_					0	0	0			REV__nc|ENSG00000020181|Q96PE1-2|ADGRA2	REV__nc|ENSG00000020181|Q96PE1-2|ADGRA2	MULTI-SECPEP	A375_MHC_IP_R1	1	551.231201171875	2	550.831714	1099.64888	-0.38312	-0.00021103	0.17738	9.7707E-05	-0.20574	-0.00011333	550.8316627805698	78.429	0.45521	78.429	78.301	78.756	0					14	8	2	0	0	0	0.27758	1	28629	28629		53.404	0	1	3764300	+		6403	27093	4417	4463	6240	6240					0.10303738480092761
DLKGLWRYRVG	11	Unmodified	_DLKGLWRYRVG_					0	0	0		tr|U7T3D3|U7T3D3_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00387PE=3SV=1	tr|U7T3D3|U7T3D3_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00387PE=3SV=1	tr|U7T3D3|U7T3D3_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00387PE=3SV=1	MSMS	A375_MHC_IP_R2	2	681.7843017578125	2	681.885678	1361.7568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.872	1	75.61	75.11	76.11	0.73752								0	0	0	0.15541	1	28418	28418		17.113	5.6182	1				6404	29967	4418	4464	6241	6241					0.09039547854013108
DLKHLDTSY	9	Unmodified	_DLKHLDTSY_					0	0	0			REV__nc|ENSG00000128607|Q6PID8-2|KLHDC10	REV__nc|ENSG00000128607|Q6PID8-2|KLHDC10	MULTI-MSMS	A375_MHC_IP_R1	1	546.709716796875	2	546.272021	1090.52949	-0.4839	-0.00026434	-2.6781	-0.001463	-3.1621	-0.0017273	546.2700562063594	50.965	0.20382	50.965	50.864	51.068	0					5	3	2	0	0	0	0.64808	1	18077	18077		11.64	0.81637	1	465870	+		6405	18460	4419	4465	6242	6242					-0.012154551446201367
DLKILNRPI	9	Unmodified	_DLKILNRPI_					0	0	0		tr|U7SM47|U7SM47_FUSNUUDP-3-O-acyl-N-acetylglucosaminedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxCPE=3SV=1	tr|U7SM47|U7SM47_FUSNUUDP-3-O-acyl-N-acetylglucosaminedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxCPE=3SV=1	tr|U7SM47|U7SM47_FUSNUUDP-3-O-acyl-N-acetylglucosaminedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxCPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	541.6665649414062	2	541.340041	1080.66553	-0.76162	-0.0004123	-1.4636	-0.00079233	-2.2253	-0.0012046	541.3389520312078	89.097	0.40427	89.829	89.482	89.886	0.7318					10	7	2	0	0	0	0.63327	1	33825	33825		18.146	5.9057	1	1206000			6406	29518	4420	4466	6243	6243					0.1284228415670441
DLKIQLTAI	9	Unmodified	_DLKIQLTAI_					0	0	0		SYCP1|p.E482K|1|0.44|ENSG00000198765|chr1:114911497-114911497|G/A|missense_variant	SYCP1|p.E482K|1|0.44|ENSG00000198765|chr1:114911497-114911497|G/A|missense_variant	SYCP1|p.E482K|1|0.44|ENSG00000198765|chr1:114911497-114911497|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	507.1360168457031	2	507.813325	1013.6121	-0.4899	-0.00024878	-0.18241	-9.2628E-05	-0.67231	-0.00034141	508.314718328876	99.663	0.50768	100.43	100.17	100.68	0.76278					12	9	2	0	0	0	0.49205	1	37760	37760		21.537	5.3879	1	540920			6407	29276	4421	4467	6244	6244					0.10583486654161334
DLKKKKKKRR	10	Unmodified	_DLKKKKKKRR_					0	0	0			REV__nc|ENSG00000114923|P48751-3|SLC4A3	REV__nc|ENSG00000114923|P48751-3|SLC4A3	MSMS	A375_MHC_IP_R2	2	664.488525390625	2	664.454062	1326.89357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.728	1	92.463	91.963	92.963	0.7345								0	0	0	0.15628	1	34887	34887		0.45834	0	1		+		6408	17847	4422	4468	6245	6245					0.24320081804398797
DLKKKRGRP	9	Unmodified	_DLKKKRGRP_					0	0	0		ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	366.94140625	3	366.568247	1096.68291	-0.20503	-7.5159E-05	2.8473	0.0010437	2.6423	0.00096857	366.90436622973135	24.42	0.81121	25.063	24.653	25.465	0.64368					31	15	3	0	0	0	0.64971	1	8056	8056		11.495	0.6952	1	10726000			6409	192	4423	4469	6246	6246					0.13843624482387895
DLKKRKPTI	9	Unmodified	_DLKKRKPTI_					0	0	0			REV__ENST00000480924.3_1_12:87563815-87564172:-|nuORF	REV__ENST00000480924.3_1_12:87563815-87564172:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	367.2452697753906	3	366.904636	1097.69208	0.27241	9.9948E-05	-0.57293	-0.00021021	-0.30052	-0.00011026	366.9043582978474	25.105	0.81276	25.105	24.749	25.562	0					29	15	3	0	0	0	0.32889	1	7256	7256		28.495	5.7195	1	7036900	+		6410	25250	4424	4470	6247	6247					0.14713973048060325
DLKLEELNF	9	Unmodified	_DLKLEELNF_					0	0	0			REV__ENSG00000138078|ENST00000409411|PREPL	REV__ENSG00000138078|ENST00000409411|PREPL	MULTI-SECPEP	A375_MHC_IP_R1	1	560.7277221679688	2	560.797872	1119.58119	-0.49746	-0.00027898	0.29445	0.00016513	-0.20302	-0.00011385	560.7978644514408	79.826	0.56252	79.826	79.574	80.136	0					22	10	3	0	0	0	0.73363	1	29111	29111		6.7232	0	1	1581400	+		6411	19060	4425	4471	6248	6248					0.02618288549274439
DLKLPKELL	9	Unmodified	_DLKLPKELL_					0	0	0		ENST00000503823.5_2_4:20255177-20255336:+|nuORF	ENST00000503823.5_2_4:20255177-20255336:+|nuORF	ENST00000503823.5_2_4:20255177-20255336:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	357.29364013671875	3	356.893625	1067.65905	0.25221	9.0012E-05	0.046398	1.6559E-05	0.29861	0.00010657	356.89355204545404	71.964	0.70798	71.964	71.715	72.423	0					24	13	3	0	0	0	0.6421	1	26184	26184		12.175	0.65687	1	2877000			6412	12811	4426	4472	6249	6249					0.1279234620533316
DLKQKMPCY	9	Unmodified	_DLKQKMPCY_					0	0	0			REV__ENST00000366847.8_1_6:167427047-167436005:+|nuORF	REV__ENST00000366847.8_1_6:167427047-167436005:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	375.6045837402344	3	375.852555	1124.53584	0.19434	7.3045E-05	-0.13499	-5.0736E-05	0.059355	2.2309E-05	375.85256086668045	27.976	0.30506	28.654	28.452	28.757	0.67857					8	5	2	0	0	0	0.74412	1	9659	9659		6.6304	0	1	1037900	+		6413	23942	4427	4473	6250	6250					-0.021449765091119843
DLKQLWETKVL	11	Unmodified	_DLKQLWETKVL_					0	0	0		nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;ENSG00000242441|ENST00000403751|GTF2A1L	nc|ENSG00000243244|Q9Y6Q2-3|STON1	nc|ENSG00000243244|Q9Y6Q2-3|STON1	MULTI-SECPEP	A375_MHC_IP_R2	2	458.1506652832031	3	458.26601	1371.7762	-0.21934	-0.00010052	0.37212	0.00017053	0.15279	7.0016E-05	458.6004760581528	68.36	0.25358	69.095	68.968	69.221	0.73511					7	4	2	0	0	0	0.99778	1	25868	25868		6.2344	4.9047	1	1179400			6414	1465	4428	4474	6251	6251					0.1051845935428446
DLKRAIHL	8	Unmodified	_DLKRAIHL_					0	0	0			REV__nc|ENSG00000140853|Q86WI3-4|NLRC5	REV__nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-SECPEP	A375_MHC_IP_R1	1	483.5849304199219	2	483.298176	964.581799	-0.3213	-0.00015528	0.18743	9.0585E-05	-0.13387	-6.4697E-05	483.2982520718757	43.901	0.76491	43.901	43.502	44.267	0					32	14	3	0	0	0	0.96266	1	15383	15383		11.64	2.2929	1	4807600	+		6415	19233	4429	4475	6252	6252					0.09809172779660003
DLKRVAGARV	10	Unmodified	_DLKRVAGARV_					0	0	0			REV__nc|ENSG00000213638|Q96EY9|ADAT3	REV__nc|ENSG00000213638|Q96EY9|ADAT3	MULTI-MSMS	A375_MHC_IP_R1	1	362.62420654296875	3	362.224368	1083.65128	0.23468	8.5007E-05	-0.26421	-9.5704E-05	-0.029532	-1.0697E-05	362.2241446750525	42.173	0.50472	42.173	41.982	42.487	0					18	9	3	0	0	0	0.57505	1	14625	14625		14.957	0	1	2166800	+		6416	22626	4430	4476	6253	6253					0.11279631728416462
DLKSVKQAKM	10	Unmodified	_DLKSVKQAKM_					0	0	0			REV__ENST00000477432.1_1_10:27443766-27443937:-|nuORF	REV__ENST00000477432.1_1_10:27443766-27443937:-|nuORF	MSMS	A375_MHC_IP_R2	2	383.28887939453125	3	383.221636	1146.64308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.546	1	50.303	49.803	50.803	0.75737								0	0	0	0.15067	1	18618	18618		16.566	0.82726	1		+		6417	25198	4431	4477	6254	6254					0.07562316696771632
DLKTQKIL	8	Unmodified	_DLKTQKIL_					0	0	0		RIPK2|p.N151K|1|0.35|ENSG00000104312|chr8:89765466-89765466|T/A|missense_variant	RIPK2|p.N151K|1|0.35|ENSG00000104312|chr8:89765466-89765466|T/A|missense_variant	RIPK2|p.N151K|1|0.35|ENSG00000104312|chr8:89765466-89765466|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	480.89886474609375	2	479.800217	957.585882	-0.82481	-0.00039574	-0.1263	-6.0599E-05	-0.95111	-0.00045634	479.8001076019606	18.955	0.28076	19.559	19.452	19.733	0.60308					12	5	3	0	0	0	0.7773	1	5696	5696		4.756	0	1	26226000			6418	29082	4432	4478	6255	6255					0.1053921748269886
DLKWLVNSP	9	Unmodified	_DLKWLVNSP_					0	0	0		nc|ENSG00000111846|Q8N0V5-2|GCNT2;ENST00000475577.5_1_6:10527835-10626837:+|nuORF;nc|ENSG00000111846|Q8N0V5-3|GCNT2;ENSG00000111846|ENST00000495262|GCNT2	nc|ENSG00000111846|Q8N0V5-2|GCNT2	nc|ENSG00000111846|Q8N0V5-2|GCNT2	MULTI-SECPEP	A375_MHC_IP_R2	2	357.2486572265625	3	357.865958	1070.57605	-0.48817	-0.0001747	3.2947	0.001179	2.8065	0.0010043	357.86695223935357	19.244	0.30274	19.847	19.683	19.986	0.60308					6	5	2	0	0	0	0.73363	1	5930	5930		2.086	0	1	749310			6419	14544	4433	4479	6256	6256					0.04358029477339187
DLKWRWNLFIF	11	Unmodified	_DLKWRWNLFIF_					0	0	0		nc|ENSG00000162989|P48549-2|KCNJ3;ENSG00000162989|ENST00000295101|KCNJ3	nc|ENSG00000162989|P48549-2|KCNJ3	nc|ENSG00000162989|P48549-2|KCNJ3	MSMS	A375_MHC_IP_R1	1	769.416259765625	2	769.419354	1536.82415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.17	1	134.17	133.67	134.67	0								0	0	0	0.16353	1	51742	51742		0.35063	0.043601	1				6420	6620	4434	4480	6257	6257					0.0772157806497944
DLLDVRNKT	9	Unmodified	_DLLDVRNKT_					0	0	0		RP1|p.E1840K|2|0.42|ENSG00000104237|chr8:54629400-54629400|G/A|missense_variant	RP1|p.E1840K|2|0.42|ENSG00000104237|chr8:54629400-54629400|G/A|missense_variant	RP1|p.E1840K|2|0.42|ENSG00000104237|chr8:54629400-54629400|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	358.93707275390625	3	358.536501	1072.58767	-0.2474	-8.8702E-05	0.96468	0.00034587	0.71728	0.00025717	358.53682869539927	26.333	0.50753	26.333	26.118	26.626	0					16	9	2	0	0	0	0.50702	1	7904	7904		18.373	4.7582	1	2521700			6421	29088	4435	4481	6258	6258					0.054282265006804664
DLLEHVDTKFV	11	Unmodified	_DLLEHVDTKFV_					0	0	0			REV__ENST00000533770.5_1_11:9861043-10215451:-|nuORF	REV__ENST00000533770.5_1_11:9861043-10215451:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	439.6344299316406	3	439.234599	1314.68197	-0.27382	-0.00012027	-0.34621	-0.00015207	-0.62003	-0.00027234	439.23421409487185	27.469	0.81176	28.148	27.843	28.655	0.67857					37	15	3	0	0	0	0.66409	1	9405	9405		18.34	0	1	10435000	+		6422	18736	4436	4482	6259	6259					0.03721320532122263
DLLFFPQRDS	10	Unmodified	_DLLFFPQRDS_					0	0	0		ENST00000548527.5_2_12:104238192-104276310:-|nuORF;ENST00000551270.1_1_12:104237536-104277386:-|nuORF;nc|ENSG00000214198|Q6P2S7-2|TTC41P;nc|ENSG00000214198|Q6P2S7|TTC41P	ENST00000548527.5_2_12:104238192-104276310:-|nuORF	ENST00000548527.5_2_12:104238192-104276310:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	413.94622802734375	3	413.211906	1236.61389	-0.027826	-1.1498E-05	0.82715	0.00034179	0.79932	0.00033029	413.2118709756487	39.719	0.76149	40.493	40.067	40.828	0.77451					25	14	3	0	0	0	0.70329	1	14714	14714		6.1918	0.32371	1	4643100			6423	13352	4437	4483	6260	6260					0.005044956721349081
DLLGTVEEIL	10	Unmodified	_DLLGTVEEIL_					0	0	0		SLC27A6|p.L242*|1|0.2|ENSG00000113396|chr5:128988636-128988636|T/-|frameshift_variant;ENSG00000113396|ENST00000262462|SLC27A6	SLC27A6|p.L242*|1|0.2|ENSG00000113396|chr5:128988636-128988636|T/-|frameshift_variant	SLC27A6|p.L242*|1|0.2|ENSG00000113396|chr5:128988636-128988636|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	550.7391967773438	2	551.305529	1100.59651	-0.44637	-0.00024609	0.85023	0.00046874	0.40386	0.00022265	551.3058602273759	47.674	0.50471	47.674	47.315	47.819	0					15	9	2	0	0	0	0.61429	1	16658	16658		30.637	0	1	1856600			6424	3149	4438	4484	6261	6261					0.05023155346475505
DLLKKEIEN	9	Unmodified	_DLLKKEIEN_					0	0	0		ENSG00000236320|ENST00000674182|SLFN14;nc|ENSG00000236320|P0C7P3-2|SLFN14	ENSG00000236320|ENST00000674182|SLFN14	ENSG00000236320|ENST00000674182|SLFN14	MSMS	A375_MHC_IP_R2	2	367.92083740234375	3	367.876523	1100.60774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.042	1	20.652	20.152	21.152	0.61029								0	0	0	0.15486	1	6205	6205		6.6304	1.3335	1				6425	9750	4439	4485	6262	6262					0.06145977440610295
DLLLDFQVV	9	Unmodified	_DLLLDFQVV_					0	0	0		ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	MSMS	A375_MHC_IP_R1	1	531.1984252929688	2	531.297507	1060.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.803	1	38.803	38.303	39.303	0								0	0	0	0.15142	1	13197	13197		19.257	1.122	1				6426	8384	4440	4486	6263	6263					0.05259493900234702
DLLLSDKYW	9	Unmodified	_DLLLSDKYW_					0	0	0			REV__ENSG00000115590|ENST00000332549|IL1R2	REV__ENSG00000115590|ENST00000332549|IL1R2	MULTI-SECPEP	A375_MHC_IP_R1	1	384.6083068847656	3	384.869368	1151.58628	0.27164	0.00010455	2.6178	0.0010075	2.8894	0.0011121	384.87042894425565	31.42	0.20187	31.42	31.312	31.514	0					5	3	2	0	0	0	0.77834	1	10032	10032		2.7352	0	1	726610	+		6427	17895	4441	4487	6264	6264					0.01654592411887279
DLLNMATQLLY	11	Unmodified	_DLLNMATQLLY_					0	0	0			REV__ENSG00000059588|ENST00000040877|TARBP1	REV__ENSG00000059588|ENST00000040877|TARBP1	MSMS	A375_MHC_IP_R2	2	647.9339599609375	2	647.839213	1293.66387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.209	1	72.943	72.443	73.443	0.73421								0	0	0	0.16258	1	27402	27402		5.2969	1.3525	1		+		6428	16441	4442	4488	6265	6265					0.028788622857973678
DLLNPLHRV	9	Unmodified	_DLLNPLHRV_					0	0	0			REV__ENST00000477693.1_1_2:122488402-122494426:-|nuORF	REV__ENST00000477693.1_1_2:122488402-122494426:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	358.9132995605469	3	359.545219	1075.61383	-0.44507	-0.00016002	1.0117	0.00036375	0.56663	0.00020373	359.880032076842	23.96	0.15463	24.591	24.485	24.64	0.63015					4	2	2	0	0	0	0.78798	1	7800	7800		2.2828	0.5405	1	1058800	+		6429	19923	4443	4489	6266	6266					0.07904540462800469
DLLNSVIQF	9	Unmodified	_DLLNSVIQF_					0	0	0			REV__ENSG00000135298|ENST00000370598|ADGRB3	REV__ENSG00000135298|ENST00000370598|ADGRB3	MULTI-MSMS	A375_MHC_IP_R1	1	524.7308959960938	2	524.787307	1047.56006	-0.56685	-0.00029747	-2.6365	-0.0013836	-3.2033	-0.0016811	525.2881049386966	95.416	0.50484	95.416	95.16	95.665	0					12	9	2	0	0	0	0.34064	1	35077	35077		27.629	3.4188	1	2903700	+		6430	18840	4444	4490	6267	6267					0.038183232404207956
DLLNSVIQF	9	Unmodified	_DLLNSVIQF_					0	0	0			REV__ENSG00000135298|ENST00000370598|ADGRB3	REV__ENSG00000135298|ENST00000370598|ADGRB3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	524.787307	1047.56006	-0.56685	-0.00029747	-2.6365	-0.0013836	-3.2033	-0.0016811	525.2881049386966	95.416	0.50484	95.416	95.16	95.665	0	0.027575	-6.127E-05	NaN	27.629	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2903700	+		6431	18840	4444	4490							0.038183232404207956
DLLNSVIQF	9	Unmodified	_DLLNSVIQF_					0	0	0			REV__ENSG00000135298|ENST00000370598|ADGRB3	REV__ENSG00000135298|ENST00000370598|ADGRB3	MULTI-MATCH	A375_MHC_IP_R2	2		2	524.787307	1047.56006	-0.26147	-0.00013721	-2.3669	-0.0012421	-2.6284	-0.0013794	525.2882271445487	94.616	0.35415	95.361	95.173	95.528	0.74474	-0.027575	0.00022162	NaN	27.629	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1961500	+		6432	18840	4444	4490							0.038183232404207956
DLLPHPVL	8	Unmodified	_DLLPHPVL_					0	0	0		ENSG00000123364|ENST00000243056|HOXC13	ENSG00000123364|ENST00000243056|HOXC13	ENSG00000123364|ENST00000243056|HOXC13	MULTI-MSMS	A375_MHC_IP_R2	2	452.66802978515625	2	452.268553	902.522553	-0.45558	-0.00020604	-0.25407	-0.00011491	-0.70965	-0.00032095	452.2684812615103	62.168	0.70977	62.91	62.521	63.23	0.74263					24	13	3	0	0	0	0.48378	1	23530	23530		49.669	0	1	2712700			6433	3842	4445	4491	6268	6268					0.06739276765461
DLLPQPIVDQ	10	Unmodified	_DLLPQPIVDQ_					0	0	0			REV__ENST00000497138.5_1_20:56807969-56820980:-|nuORF	REV__ENST00000497138.5_1_20:56807969-56820980:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	379.9277648925781	3	379.876523	1136.60774	-0.2611	-9.9187E-05	0.013422	5.0985E-06	-0.24768	-9.4088E-05	379.87649894846606	23.424	0.6585	24.054	23.675	24.333	0.63014					37	12	5	0	0	0	0.67901	1	7402	7402		14.957	3.4393	1	239450000	+		6434	25425	4446	4492	6269	6269					0.044899774406076176
DLLRALQNG	9	Unmodified	_DLLRALQNG_					0	0	0			REV__nc|ENSG00000254402|Q50LG9|LRRC24	REV__nc|ENSG00000254402|Q50LG9|LRRC24	MULTI-MSMS	A375_MHC_IP_R2	2	500.71368408203125	2	500.282723	998.550893	-0.3946	-0.00019741	0.068188	3.4113E-05	-0.32642	-0.0001633	500.2816697772683	111.09	0.15302	111.83	111.75	111.9	0.73692					4	2	2	0	0	0	0.35581	1	41914	41914		26.884	6.43	1	461460	+		6435	27530	4447	4493	6270	6270					0.051559746747557256
DLLRCVSCS	9	Unmodified	_DLLRCVSCS_					0	0	0		ENST00000504869.1_1_4:83821360-83821651:-|nuORF	ENST00000504869.1_1_4:83821360-83821651:-|nuORF	ENST00000504869.1_1_4:83821360-83821651:-|nuORF	MSMS	A375_MHC_IP_R2	2	498.1752624511719	2	498.23607	994.457586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.148	1	68.883	68.383	69.383	0.73511								0	0	0	0.15486	1	25825	25825		13.042	0.51092	1				6436	12829	4448	4494	6271	6271					-0.0398640909434107
DLLRIQFW	8	Unmodified	_DLLRIQFW_					0	0	0		ENST00000562946.5_1_15:42519884-42565596:-|nuORF;ENSG00000103978|ENST00000389834|TMEM87A;ENST00000569075.5_1_15:42525398-42565582:-|nuORF;nc|ENSG00000103978|Q8NBN3-3|TMEM87A	ENST00000562946.5_1_15:42519884-42565596:-|nuORF	ENST00000562946.5_1_15:42519884-42565596:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	546.2022705078125	2	545.805834	1089.59712	-0.49211	-0.0002686	0.35136	0.00019177	-0.14076	-7.6826E-05	545.8055746779903	102.63	0.71042	102.63	102.35	103.06	0					25	13	2	0	0	0	0.96184	1	37677	37677		7.2892	0	1	3533000			6437	2476	4449	4495	6272	6272					0.055900395768503586
DLLSHEAYL	9	Unmodified	_DLLSHEAYL_					0	0	0			REV__ENSG00000224051|ENST00000343938|CPTP	REV__ENSG00000224051|ENST00000343938|CPTP	MULTI-SECPEP	A375_MHC_IP_R1	1	530.6942138671875	2	530.769114	1059.52368	-0.58889	-0.00031256	-0.044949	-2.3858E-05	-0.63384	-0.00033642	530.7691677480364	73.347	0.4068	73.347	73.132	73.539	0					11	7	2	0	0	0	0.24479	1	26680	26680		34.102	3.8776	1	1889300	+		6438	22707	4450	4496	6273	6273					-0.0037055365630749293
DLLSHEAYL	9	Unmodified	_DLLSHEAYL_					0	0	0			REV__ENSG00000224051|ENST00000343938|CPTP	REV__ENSG00000224051|ENST00000343938|CPTP	MULTI-SECPEP	A375_MHC_IP_R2	2	530.6347045898438	2	530.769114	1059.52368	-0.75092	-0.00039856	-1.9315	-0.0010252	-2.6824	-0.0014237	530.7685029785629	72.568	0.50697	73.303	72.973	73.48	0.73541					16	9	3	0	0	0	0.24479	1	27592	27592		50.855	2.5092	1	2584900	+		6439	22707	4450	4496	6274	6274					-0.0037055365630749293
DLLSLNSFFFY	11	Unmodified	_DLLSLNSFFFY_					0	0	0			REV__OR2B2|p.L63F|1|0.15|ENSG00000168131|chr6:27912133-27912133|G/A|missense_variant	REV__OR2B2|p.L63F|1|0.15|ENSG00000168131|chr6:27912133-27912133|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	684.78466796875	2	683.339904	1364.66525	-0.63144	-0.00043149	0.82638	0.0005647	0.19494	0.00013321	684.3424210868726	131.57	1.1148	131.76	131.24	132.35	0.18953					66	21	4	0	0	0	0.73078	1	51874	51874		8.1555	1.0538	1	13747000	+		6440	27659	4451	4497	6275	6275					-0.0024918035380778747
DLLSLYRSHEI	11	Unmodified	_DLLSLYRSHEI_					0	0	0			REV__nc|ENSG00000184012|O15393-2|TMPRSS2	REV__nc|ENSG00000184012|O15393-2|TMPRSS2	MULTI-SECPEP	A375_MHC_IP_R1	1	449.13641357421875	3	449.241865	1344.70376	-0.16147	-7.254E-05	-4.3353	-0.0019476	-4.4968	-0.0020201	449.5748298784725	40.863	0.25075	40.863	40.762	41.013	0					7	4	2	0	0	0	0.99625	1	14124	14124		7.4771	5.2243	1	1597400	+		6441	27403	4452	4498	6276	6276					0.04520125280737375
DLLTYQRLHEQ	11	Unmodified	_DLLTYQRLHEQ_					0	0	0		ZNF285|p.H580Y|1|0.25|ENSG00000267508|chr19:44386507-44386507|G/A|missense_variant	ZNF285|p.H580Y|1|0.25|ENSG00000267508|chr19:44386507-44386507|G/A|missense_variant	ZNF285|p.H580Y|1|0.25|ENSG00000267508|chr19:44386507-44386507|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	708.1959228515625	2	708.367515	1414.72048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.11	1	101.11	100.61	101.61	0								0	0	0	0.16273	1	37162	37162		4.5289	0.93237	1				6442	30210	4453	4499	6277	6277					0.029706261666660794
DLLVGHFTV	9	Unmodified	_DLLVGHFTV_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MSMS	A375_MHC_IP_R2	2	500.6845703125	2	500.776742	999.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.58	1	109.33	108.83	109.83	0.74684								0	0	0	0.14677	1	40998	40998		26.884	0	1		+		6443	20940	4454	4500	6278	6278					0.039143579315805255
DLLVLFINY	9	Unmodified	_DLLVLFINY_					0	0	0		nc|ENSG00000142192|P05067-11|APP	nc|ENSG00000142192|P05067-11|APP	nc|ENSG00000142192|P05067-11|APP	MULTI-MSMS	A375_MHC_IP_R1	1	555.7147827148438	2	555.3157	1108.61685	-0.70634	-0.00039224	-1.2234	-0.00067938	-1.9297	-0.0010716	555.3149582589964	27.117	0.40301	27.117	26.928	27.331	0					12	7	2	0	0	0	0.74768	1	8206	8206		4.756	0.42677	1	3025000			6444	14649	4455	4501	6279	6279					0.06688370796928211
DLLVLFINY	9	Unmodified	_DLLVLFINY_					0	0	0		nc|ENSG00000142192|P05067-11|APP	nc|ENSG00000142192|P05067-11|APP	nc|ENSG00000142192|P05067-11|APP	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	555.3157	1108.61685	-0.70634	-0.00039224	-1.2234	-0.00067938	-1.9297	-0.0010716	555.3149582589964	27.117	0.40301	27.117	26.928	27.331	0	-0.052411	1.609E-06	NaN	4.756	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3025000			6445	14649	4455	4501							0.06688370796928211
DLLWYFNWDEN	11	Unmodified	_DLLWYFNWDEN_					0	0	0			REV__nc|ENSG00000100271|O95922-2|TTLL1	REV__nc|ENSG00000100271|O95922-2|TTLL1	MSMS	A375_MHC_IP_R2	2	505.608642578125	3	505.557741	1513.6514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.264	1	37.035	36.535	37.535	0.7709								0	0	0	0.16334	1	13206	13206		1.3296	0	1		+		6446	27141	4456	4502	6280	6280					-0.08488457852899955
DLLYSRFN	8	Unmodified	_DLLYSRFN_					0	0	0			REV__nc|nan|Q9BWL3-5|C1orf43	REV__nc|nan|Q9BWL3-5|C1orf43	MULTI-MSMS	A375_MHC_IP_R2	2	514.6637573242188	2	514.263999	1026.51345	-0.67128	-0.00034521	0.90622	0.00046604	0.23494	0.00012082	514.2643970684579	91.792	0.55777	92.526	92.222	92.78	0.73451					16	10	2	0	0	0	0.71817	1	34916	34916		29.082	0.59474	1	1964700	+		6447	19371	4457	4503	6281	6281					0.001248834091484241
DLMEEETMHEG	11	Unmodified	_DLMEEETMHEG_					0	0	0			REV__ENSG00000158023|ENST00000288912|CFAP251	REV__ENSG00000158023|ENST00000288912|CFAP251	MSMS	A375_MHC_IP_R2	2	660.82470703125	2	660.75776	1319.50097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.721	1	22.341	21.841	22.841	0.61932								0	0	0	0.16297	1	6861	6861		3.2813	1.2216	1		+		6448	20058	4458	4504	6282	6282					-0.14600308898343428
DLMKNLLKL	9	Unmodified	_DLMKNLLKL_					0	0	0		ENSG00000008086|ENST00000623535|CDKL5;nc|ENSG00000008086|O76039-1|CDKL5	ENSG00000008086|ENST00000623535|CDKL5	ENSG00000008086|ENST00000623535|CDKL5	MULTI-SECPEP	A375_MHC_IP_R2	2	544.2288818359375	2	544.330827	1086.6471	-1.1846	-0.00064483	0.1156	6.2923E-05	-1.069	-0.00058191	544.3312073788094	59.72	0.30414	60.467	60.249	60.553	0.74714					7	5	2	0	0	0	0.76187	1	22618	22618		7.2892	4.7117	1	2114400			6449	951	4459	4505	6283	6283					0.10724406190502123
DLMNNLQPF	9	Unmodified	_DLMNNLQPF_					0	0	0		ENSG00000173597|ENST00000310613|SULT1B1	ENSG00000173597|ENST00000310613|SULT1B1	ENSG00000173597|ENST00000310613|SULT1B1	MSMS	A375_MHC_IP_R2	2	546.1926879882812	2	546.263142	1090.51173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.261	1	43.033	42.533	43.533	0.7724								0	0	0	0.15468	1	15716	15716		13.906	0	1				6450	7813	4460	4506	6284	6284					-0.02990493671131844
DLMNTPEDLL	10	Unmodified	_DLMNTPEDLL_					0	0	0			REV__ENST00000489719.1_1_3:183906756-183907300:+|nuORF	REV__ENST00000489719.1_1_3:183906756-183907300:+|nuORF	MSMS	A375_MHC_IP_R2	2	387.4175109863281	3	387.52164	1159.54309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.646	1	37.417	36.917	37.917	0.7709								0	0	0	0.15531	1	13372	13372		1.7423	0	1		+		6451	20203	4461	4507	6285	6285					-0.030299654276859656
DLMPGHDPD	9	Unmodified	_DLMPGHDPD_					0	0	0			REV__nc|ENSG00000137809|Q9UKX5-2|ITGA11	REV__nc|ENSG00000137809|Q9UKX5-2|ITGA11	MULTI-SECPEP	A375_MHC_IP_R2	2	995.8128051757812	1	996.409122	995.401846	0.20984	0.00020909	0.65917	0.00065681	0.86902	0.0008659	996.4099714023878	114.41	0.20367	115.12	114.98	115.19	0.70984					8	3	3	0	0	0	0.76187	1	43104	43104		11.64	1.4569	1	4980900	+		6452	19034	4462	4508	6286	6286					-0.09603919010305617
DLNAASQSFY	10	Unmodified	_DLNAASQSFY_					0	0	0			REV__ENSG00000176208|ENST00000321990|ATAD5	REV__ENSG00000176208|ENST00000321990|ATAD5	MSMS	A375_MHC_IP_R1	1	558.2040405273438	2	558.253828	1114.4931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.15	1	107.15	106.65	107.65	0								0	0	0	0.15207	1	39322	39322		13.906	0.39817	1		+		6453	21394	4463	4509	6287	6287					-0.05956332041341739
DLNDWAKFV	9	Unmodified	_DLNDWAKFV_					0	0	0		tr|U7T613|U7T613_FUSNUPyruvateformate-lyase-activatingenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00053PE=3SV=1	tr|U7T613|U7T613_FUSNUPyruvateformate-lyase-activatingenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00053PE=3SV=1	tr|U7T613|U7T613_FUSNUPyruvateformate-lyase-activatingenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00053PE=3SV=1	MSMS	A375_MHC_IP_R1	1	554.2373657226562	2	554.277106	1106.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.15	1	50.15	49.65	50.65	0								0	0	0	0.15411	1	17758	17758		14.838	0	1				6454	30039	4464	4510	6288	6288					-0.009348474193984657
DLNEAPYFF	9	Unmodified	_DLNEAPYFF_					0	0	0			REV__SAMD3|p.S108F|1|0.51|ENSG00000164483|chr6:130209555-130209555|G/A|missense_variant	REV__SAMD3|p.S108F|1|0.51|ENSG00000164483|chr6:130209555-130209555|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	558.1981811523438	2	558.25584	1114.49713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.958	1	48.958	48.458	49.458	0								0	0	0	0.15411	1	17296	17296		14.838	1.7958	1		+		6455	27907	4465	4511	6289	6289					-0.05554242547623289
DLNERWNYRPH	11	Unmodified	_DLNERWNYRPH_					0	0	0			REV__ENSG00000180210|ENST00000311907|F2	REV__ENSG00000180210|ENST00000311907|F2	MSMS	A375_MHC_IP_R1	1	500.4752197265625	3	500.576129	1498.70656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.189	1	88.189	87.689	88.689	0								0	0	0	0.16258	1	32370	32370		2.4348	1.1051	1		+		6456	21599	4466	4512	6290	6290					-0.022846065417979844
DLNERWNYRPH	11	Unmodified	_DLNERWNYRPH_					0	0	0			REV__ENSG00000180210|ENST00000311907|F2	REV__ENSG00000180210|ENST00000311907|F2	MSMS	A375_MHC_IP_R1	1	500.47491455078125	3	500.576129	1498.70656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.855	1	89.855	89.355	90.355	0								0	0	0	0.16307	1	33018	33018		1.1098	0	1		+		6457	21599	4466	4512	6291	6291					-0.022846065417979844
DLNERWNYRPH	11	Unmodified	_DLNERWNYRPH_					0	0	0			REV__ENSG00000180210|ENST00000311907|F2	REV__ENSG00000180210|ENST00000311907|F2	MSMS	A375_MHC_IP_R1	1	500.47491455078125	3	500.576129	1498.70656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.83	1	100.83	100.33	101.33	0								0	0	0	0.16334	1	37062	37062		0.45452	0	1		+		6458	21599	4466	4512	6292	6292					-0.022846065417979844
DLNERWNYRPH	11	Unmodified	_DLNERWNYRPH_					0	0	0			REV__ENSG00000180210|ENST00000311907|F2	REV__ENSG00000180210|ENST00000311907|F2	MSMS	A375_MHC_IP_R1	1	500.4749755859375	3	500.576129	1498.70656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.78	1	106.78	106.28	107.28	0								0	0	0	0.16334	1	39192	39192		0.45452	0	1		+		6459	21599	4466	4512	6293	6293					-0.022846065417979844
DLNFIEDH	8	Unmodified	_DLNFIEDH_					0	0	0			REV__tr|U7SQV1|U7SQV1_FUSNUPhosphoenolpyruvatecarboxykinase(ATP)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=pckAPE=3SV=1	REV__tr|U7SQV1|U7SQV1_FUSNUPhosphoenolpyruvatecarboxykinase(ATP)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=pckAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	501.6741943359375	2	501.729989	1001.44543	-0.74481	-0.00037369	-0.42058	-0.00021102	-1.1654	-0.00058471	501.7299289478253	44.823	0.35968	45.593	45.39	45.75	0.7691					10	6	2	0	0	0	0.7754	1	16720	16720		11.64	0.81637	1	901180	+		6460	28385	4467	4513	6294	6294					-0.05523986241530565
DLNFIEDH	8	Unmodified	_DLNFIEDH_					0	0	0			REV__tr|U7SQV1|U7SQV1_FUSNUPhosphoenolpyruvatecarboxykinase(ATP)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=pckAPE=3SV=1	REV__tr|U7SQV1|U7SQV1_FUSNUPhosphoenolpyruvatecarboxykinase(ATP)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=pckAPE=3SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	501.729989	1001.44543	-0.12559	-6.3015E-05	1.3188	0.00066167	1.1932	0.00059866	501.7307185742257	45.506	0.25223	45.506	45.384	45.636	0	-0.043432	0.0012525	NaN	11.64	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	856590	+		6461	28385	4467	4513							-0.05523986241530565
DLNFIEDH	8	Unmodified	_DLNFIEDH_					0	0	0			REV__tr|U7SQV1|U7SQV1_FUSNUPhosphoenolpyruvatecarboxykinase(ATP)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=pckAPE=3SV=1	REV__tr|U7SQV1|U7SQV1_FUSNUPhosphoenolpyruvatecarboxykinase(ATP)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=pckAPE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	501.729989	1001.44543	-0.74481	-0.00037369	-0.42058	-0.00021102	-1.1654	-0.00058471	501.7299289478253	44.823	0.35968	45.593	45.39	45.75	0.7691	0.043432	-0.00049292	NaN	11.64	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	901180	+		6462	28385	4467	4513							-0.05523986241530565
DLNILFNEN	9	Unmodified	_DLNILFNEN_					0	0	0		ENSG00000204595|ENST00000376650|DPRX	ENSG00000204595|ENST00000376650|DPRX	ENSG00000204595|ENST00000376650|DPRX	MULTI-MSMS	A375_MHC_IP_R2	2	547.1724243164062	2	546.272021	1090.52949	-1.1414	-0.0006235	-0.092319	-5.0431E-05	-1.2337	-0.00067393	546.2720795535038	52.068	0.96554	52.82	52.169	53.134	0.75225					34	18	3	0	0	0	0.41409	2	19577	19577;19597		24.021	7.0783	1	5431300			6463	9463	4468	4514	6295;6296	6295					-0.012154551446201367
DLNIYVKPHGL	11	Unmodified	_DLNIYVKPHGL_					0	0	0			REV__ENSG00000145494|ENST00000274137|NDUFS6	REV__ENSG00000145494|ENST00000274137|NDUFS6	MULTI-MSMS	A375_MHC_IP_R1	1	423.970947265625	3	423.571434	1267.69247	-0.22626	-9.5839E-05	-0.70426	-0.0002983	-0.93052	-0.00039414	423.5710360157229	24.368	0.55522	24.368	24.143	24.698	0					19	10	3	0	0	0	0.65918	1	6919	6919		18.721	2.1553	1	6821000	+		6464	19476	4469	4515	6297	6297					0.06933347977224003
DLNIYVKPHGL	11	Unmodified	_DLNIYVKPHGL_					0	0	0			REV__ENSG00000145494|ENST00000274137|NDUFS6	REV__ENSG00000145494|ENST00000274137|NDUFS6	MULTI-SECPEP	A375_MHC_IP_R1	1	423.970947265625	3	423.571434	1267.69247	-0.22626	-9.5839E-05	-0.70426	-0.0002983	-0.93052	-0.00039414	423.5710360157229	24.368	0.55522	24.368	24.143	24.698	0					19	10	3	0	0	0	0.98069	1	6919	6919		18.721	2.1553	1	6821000	+		6465	19476	4469	4515	6298	6298					0.06933347977224003
DLNKEIIDV	9	Unmodified	_DLNKEIIDV_					0	0	0		tr|U7SNG3|U7SNG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01981PE=4SV=1	tr|U7SNG3|U7SNG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01981PE=4SV=1	tr|U7SNG3|U7SNG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01981PE=4SV=1	MSMS	A375_MHC_IP_R2	2	529.7160034179688	2	529.790047	1057.56554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.103	1	91.837	91.337	92.337	0.7345								0	0	0	0.14905	1	34665	34665		23.148	1.6114	1				6466	29549	4470	4516	6299	6299					0.03906002032226752
DLNKVATKL	9	Unmodified	_DLNKVATKL_					0	0	0		nc|ENSG00000169016|O75461-2|E2F6;ENST00000468775.1_1_2:11591697-11606038:-|nuORF;nc|ENSG00000169016|O75461-3|E2F6;ENSG00000169016|ENST00000381525|E2F6	nc|ENSG00000169016|O75461-2|E2F6	nc|ENSG00000169016|O75461-2|E2F6	MULTI-SECPEP	A375_MHC_IP_R1	1	501.1781005859375	2	501.303124	1000.5917	-0.57894	-0.00029022	3.964	0.0019872	3.3851	0.0016969	501.8081102790014	84.721	0.30653	84.721	84.494	84.8	0					7	5	2	0	0	0	0.38578	1	31022	31022		27.629	3.6082	1	336260			6467	7369	4471	4517	6300	6300					0.09142315994370165
DLNLHSDDPD	10	Unmodified	_DLNLHSDDPD_					0	0	0			REV__nc|ENSG00000028310|Q9H8M2-6|BRD9;REV__nc|ENSG00000028310|Q9H8M2-3|BRD9	REV__nc|ENSG00000028310|Q9H8M2-3|BRD9	MULTI-SECPEP	A375_MHC_IP_R2	2	571.1432495117188	2	570.743825	1139.4731	-0.72152	-0.0004118	-0.16594	-9.4707E-05	-0.88746	-0.00050651	570.743619647878	26.068	0.45635	26.728	26.602	27.058	0.65992					12	8	2	0	0	0	0.70528	1	8809	8809		32.786	5.1569	1	3844500	+		6468	27095;16295	4472	4518	6301	6301					-0.09106127771951833
DLNLLEWTHHS	11	Unmodified	_DLNLLEWTHHS_					0	0	0		nc|ENSG00000163904|Q9HC62-2|SENP2;ENSG00000163904|ENST00000296257|SENP2	nc|ENSG00000163904|Q9HC62-2|SENP2	nc|ENSG00000163904|Q9HC62-2|SENP2	MSMS	A375_MHC_IP_R2	2	682.7377319335938	2	682.833308	1363.65206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.17	1	118.78	118.28	119.28	0.60909								0	0	0	0.15488	1	44841	44841		17.443	8.6972	1				6469	6742	4473	4519	6302	6302					-0.015216184131986665
DLNLLLRVV	9	Unmodified	_DLNLLLRVV_					0	0	0			REV__ENST00000443950.6_1_10:43883130-43883238:-|nuORF	REV__ENST00000443950.6_1_10:43883130-43883238:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	528.2341918945312	2	527.834591	1053.65463	-0.63542	-0.0003354	-0.1397	-7.374E-05	-0.77512	-0.00040914	527.8344578312216	94.399	0.51045	94.399	94.14	94.651	0					15	9	2	0	0	0	0.20567	1	34719	34719		30.637	23.347	1	1169400	+		6470	24831	4474	4520	6303	6303					0.12994881782401535
DLNPNRFPIFA	11	Unmodified	_DLNPNRFPIFA_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	MSMS	A375_MHC_IP_R1	1	435.2822570800781	3	435.2313	1302.67207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.812	1	70.812	70.312	71.312	0								0	0	0	0.15837	1	25716	25716		8.7518	2.1283	1				6471	1217	4475	4521	6304	6304					0.03284177317414105
DLNRIRKKPYI	11	Unmodified	_DLNRIRKKPYI_					0	0	0		nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;ENSG00000135655|ENST00000280377|USP15;ENST00000549268.1_1_12:62768286-62777812:+|nuORF	nc|ENSG00000135655|Q9Y4E8-2|USP15	nc|ENSG00000135655|Q9Y4E8-2|USP15	MSMS	A375_MHC_IP_R2	2	708.6807861328125	2	708.42771	1414.84087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.02	1	130.23	129.73	130.73	0.2142								0	0	0	0.16307	1	51103	51103		2.7352	0	1				6472	4702	4476	4522	6305	6305					0.15004078950937583
DLNRRCIDY	9	Unmodified	_DLNRRCIDY_					0	0	0			REV__nc|ENSG00000183785|Q9NY65-2|TUBA8	REV__nc|ENSG00000183785|Q9NY65-2|TUBA8	MSMS	A375_MHC_IP_R2	2	584.2081298828125	2	584.282397	1166.55024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.41	1	85.146	84.646	85.646	0.73601								0	0	0	0.15283	1	32088	32088		16.942	5.302	1		+		6473	16665	4477	4523	6306	6306					-0.02637188036601401
DLNRSKEFM	9	Unmodified	_DLNRSKEFM_					0	0	0		VWF|p.F1514L|1|0.31|ENSG00000110799|chr12:6018878-6018878|A/G|missense_variant	VWF|p.F1514L|1|0.31|ENSG00000110799|chr12:6018878-6018878|A/G|missense_variant	VWF|p.F1514L|1|0.31|ENSG00000110799|chr12:6018878-6018878|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	380.9330139160156	3	380.521974	1138.54409	0.20898	7.9521E-05	0.13069	4.9732E-05	0.33967	0.00012925	380.5220791711987	43.799	0.4538	44.568	44.278	44.732	0.7691					14	8	2	0	0	0	0.75164	1	16300	16300		6.1918	1.663	1	1295700			6474	30155	4478	4524	6307	6307					-0.019637062681340467
DLNRVHEM	8	Unmodified	_DLNRVHEM_					0	0	0		USP32|p.K847M|1|0.4|ENSG00000170832|chr17:60209428-60209428|T/A|missense_variant	USP32|p.K847M|1|0.4|ENSG00000170832|chr17:60209428-60209428|T/A|missense_variant	USP32|p.K847M|1|0.4|ENSG00000170832|chr17:60209428-60209428|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9801025390625	2	507.245283	1012.47601	-1.0399	-0.00052747	0.79619	0.00040387	-0.24368	-0.0001236	507.245601964612	60.948	0.60597	61.693	61.364	61.97	0.74503					19	11	2	0	0	0	0.93661	1	23157	23157		15.847	0	1	8623300			6475	30128	4479	4525	6308	6308					-0.02972531128114042
DLNSYFVI	8	Unmodified	_DLNSYFVI_					0	0	0			REV__PLXNA4|p.S175F|1|0.25|ENSG00000221866|chr7:132508170-132508170|G/A|missense_variant	REV__PLXNA4|p.S175F|1|0.25|ENSG00000221866|chr7:132508170-132508170|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	486.1485900878906	2	485.74765	969.480748	-0.48103	-0.00023366	2.172	0.0010551	1.691	0.0008214	485.7487572213877	131.3	0.20078	131.3	131.18	131.38	0					5	3	2	0	0	0	0.6817	1	50651	50651		40.449	6.3461	1	2874500	+		6476	27809	4480	4526	6309	6309					-0.00521323713712718
DLNSYFVI	8	Unmodified	_DLNSYFVI_					0	0	0			REV__PLXNA4|p.S175F|1|0.25|ENSG00000221866|chr7:132508170-132508170|G/A|missense_variant	REV__PLXNA4|p.S175F|1|0.25|ENSG00000221866|chr7:132508170-132508170|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	485.74765	969.480748	-0.48103	-0.00023366	2.172	0.0010551	1.691	0.0008214	485.7487572213877	131.3	0.20078	131.3	131.18	131.38	0	0.0066944	3.8297E-05	NaN	40.449	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2874500	+		6477	27809	4480	4526							-0.00521323713712718
DLNSYFVI	8	Unmodified	_DLNSYFVI_					0	0	0			REV__PLXNA4|p.S175F|1|0.25|ENSG00000221866|chr7:132508170-132508170|G/A|missense_variant	REV__PLXNA4|p.S175F|1|0.25|ENSG00000221866|chr7:132508170-132508170|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	485.74765	969.480748	-0.59652	-0.00028976	1.8546	0.00090086	1.2581	0.0006111	485.74917246254853	131.07	0.20264	131.29	131.16	131.36	0.2142	-0.0066944	-0.00027009	NaN	40.449	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1812700	+		6478	27809	4480	4526							-0.00521323713712718
DLNTVQFRLL	10	Unmodified	_DLNTVQFRLL_					0	0	0			REV__DSG3|p.D292N|1|0.36|ENSG00000134757|chr18:31461287-31461287|G/A|missense_variant	REV__DSG3|p.D292N|1|0.36|ENSG00000134757|chr18:31461287-31461287|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	407.29925537109375	3	406.89955	1217.67682	-0.49107	-0.00019982	-0.50374	-0.00020497	-0.99481	-0.00040479	406.89935421151137	32.554	0.75859	32.554	32.231	32.989	0					37	14	4	0	0	0	0.56082	1	10497	10497		23.801	2.9299	1	14074000	+		6479	16040	4481	4527	6310	6310					0.07669061460183002
DLNTYSLLA	9	Unmodified	_DLNTYSLLA_					0	0	0		nc|ENSG00000007402|Q9NY47-4|CACNA2D2;nc|ENSG00000007402|Q9NY47-3|CACNA2D2;nc|ENSG00000007402|Q9NY47-5|CACNA2D2;ENSG00000007402|ENST00000424201|CACNA2D2;nc|ENSG00000007402|Q9NY47|CACNA2D2	nc|ENSG00000007402|Q9NY47-4|CACNA2D2	nc|ENSG00000007402|Q9NY47-4|CACNA2D2	MULTI-SECPEP	A375_MHC_IP_R1	1	505.6448974609375	2	505.263665	1008.51278	-0.40745	-0.00020587	0.23148	0.00011696	-0.17597	-8.891E-05	505.2636909353181	61.067	0.61137	61.067	60.719	61.331	0					18	11	2	0	0	0	0.59098	1	21980	21980		21.537	0	1	3002600			6480	14452	4482	4528	6311	6311					0.008860439694444722
DLPCMENAV	9	Unmodified	_DLPCMENAV_					0	0	0		ENST00000394662.2_1_1:89887573-89889825:+|nuORF;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117226|ENST00000370481|GBP3;ENSG00000162645|ENST00000370466|GBP2;ENSG00000117228|ENST00000370473|GBP1	ENST00000394662.2_1_1:89887573-89889825:+|nuORF;ENSG00000117228|ENST00000370473|GBP1	ENST00000394662.2_1_1:89887573-89889825:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	496.6158752441406	2	496.214803	990.415053	-0.30854	-0.0001531	-0.45083	-0.00022371	-0.75937	-0.00037681	496.2146520644177	89.075	1.0664	89.075	88.663	89.73	0					47	20	3	0	0	0	0.6898	1	32912	32912		7.9102	1.187	1	8408000			6481	3465;3466	4483	4529	6312	6312					-0.0805380422257258
DLPDERDIF	9	Unmodified	_DLPDERDIF_					0	0	0		ENST00000527539.1_1_11:119692129-119692348:-|nuORF	ENST00000527539.1_1_11:119692129-119692348:-|nuORF	ENST00000527539.1_1_11:119692129-119692348:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	560.7113037109375	2	560.269478	1118.5244	-0.49902	-0.00027958	1.3532	0.00075818	0.85423	0.0004786	560.2698478328485	53.441	0.55826	53.441	52.997	53.555	0					9	6	2	0	0	0	0.41409	1	19091	19091		24.021	1.2843	1	1392600			6482	13104	4484	4530	6313	6313					-0.030117590072450184
DLPEFQPDP	9	Unmodified	_DLPEFQPDP_					0	0	0			REV__ENST00000513442.1_1_5:180338577-180375566:+|nuORF	REV__ENST00000513442.1_1_5:180338577-180375566:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	529.1530151367188	2	529.245472	1056.47639	-0.32818	-0.00017369	-0.52574	-0.00027824	-0.85392	-0.00045193	529.245157556359	71.76	0.70425	71.76	71.415	72.119	0					20	13	2	0	0	0	0.60101	1	25965	25965		14.838	0.25658	1	4669300	+		6483	25640	4485	4531	6314	6314					-0.049588329272637566
DLPGHEELF	9	Unmodified	_DLPGHEELF_					0	0	0			REV__nc|ENSG00000182670|P53804-3|TTC3	REV__nc|ENSG00000182670|P53804-3|TTC3	MULTI-SECPEP	A375_MHC_IP_R2	2	528.0303344726562	2	528.753464	1055.49238	-0.59896	-0.0003167	-0.47187	-0.0002495	-1.0708	-0.0005662	528.7531100058876	70.787	0.50412	71.521	71.302	71.806	0.73421					21	9	3	0	0	0	0.52144	1	26932	26932		23.148	2.6948	1	13928000	+		6484	21703	4486	4532	6315	6315					-0.03315126690381476
DLPGQKAGPK	10	Unmodified	_DLPGQKAGPK_					0	0	0			REV__ENSG00000079482|ENST00000355520|OPHN1	REV__ENSG00000079482|ENST00000355520|OPHN1	MULTI-SECPEP	A375_MHC_IP_R1	1	505.66552734375	2	505.785099	1009.55564	-0.58597	-0.00029637	-0.46084	-0.00023309	-1.0468	-0.00052946	505.78474433440755	26.946	0.50255	26.946	26.828	27.331	0					21	9	3	0	0	0	0.93405	1	8224	8224		2.7352	0.23671	1	3455700	+		6485	16735	4487	4533	6316	6316					0.05124858817521272
DLPHEFTL	8	Unmodified	_DLPHEFTL_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MULTI-SECPEP	A375_MHC_IP_R1	1	486.3326721191406	2	486.245275	970.475997	-0.61403	-0.00029857	0.42026	0.00020435	-0.19377	-9.422E-05	486.24547947515697	67.693	1.0138	67.693	67.297	68.31	0					37	19	3	0	0	0	0.94479	1	24732	24732		19.439	9.2556	1	6616600	+		6486	22098	4488	4534	6317	6317					-0.010422078564602089
DLPHHSLSF	9	Unmodified	_DLPHHSLSF_					0	0	0			REV__SEMA3C|p.F353Lfs*11|1|0.06|ENSG00000075223|chr7:80798164-80798164|A/-|frameshift_variant	REV__SEMA3C|p.F353Lfs*11|1|0.06|ENSG00000075223|chr7:80798164-80798164|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	528.1874389648438	2	526.761623	1051.50869	-0.4966	-0.00026159	0.00071553	3.7691E-07	-0.49589	-0.00026121	526.7615741287099	64.02	0.60828	64.02	63.684	64.292	0					31	11	4	0	0	0	0.58047	1	23052	23052		15.847	15.847	1	6396700	+		6487	16652	4489	4535	6318	6318					-0.015000007336311683
DLPQEKYFY	9	Unmodified	_DLPQEKYFY_					0	0	0			REV__ENSG00000171714|ENST00000324559|ANO5	REV__ENSG00000171714|ENST00000324559|ANO5	MULTI-SECPEP	A375_MHC_IP_R1	1	601.9719848632812	2	601.790047	1201.56554	-0.54506	-0.00032801	2.7317	0.0016439	2.1866	0.0013159	601.7916784945664	91.114	0.30297	91.114	90.946	91.249	0					8	5	2	0	0	0	0.71541	1	33487	33487		16.942	4.4107	1	633910	+		6488	21089	4490	4536	6319	6319					-0.02717997967761221
DLPQTMDQY	9	Unmodified	_DLPQTMDQY_					0	0	0			REV__PLCD4|p.N297D|1|0.34|ENSG00000115556|chr2:218628145-218628145|A/G|missense_variant	REV__PLCD4|p.N297D|1|0.34|ENSG00000115556|chr2:218628145-218628145|A/G|missense_variant	MSMS	A375_MHC_IP_R2	2	555.6820678710938	2	555.742239	1109.46993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.141	1	59.888	59.388	60.388	0.74714								0	0	0	0.15486	1	22380	22380		9.3831	0.035688	1		+		6489	27794	4491	4537	6320	6320					-0.08043094150298202
DLPRKPEVTDL	11	Unmodified	_DLPRKPEVTDL_					0	0	0		ENSG00000136881|ENST00000259407|BAAT	ENSG00000136881|ENST00000259407|BAAT	ENSG00000136881|ENST00000259407|BAAT	MULTI-SECPEP	A375_MHC_IP_R2	2	428.14739990234375	3	428.238232	1281.69287	-0.22811	-9.7684E-05	0.57423	0.00024591	0.34612	0.00014822	428.23874961756326	48.72	0.60712	49.477	48.929	49.536	0.75737					14	11	2	0	0	0	0.99548	1	18287	18287		8.7518	5.9085	1	1042300			6490	4836	4492	4538	6321	6321					0.06328722906437179
DLPSGPNASK	10	Unmodified	_DLPSGPNASK_					0	0	0			REV__nc|ENSG00000144893|Q86YW9-2|MED12L	REV__nc|ENSG00000144893|Q86YW9-2|MED12L	MULTI-MSMS	A375_MHC_IP_R2	2	493.6502990722656	2	493.251089	984.487624	-0.49991	-0.00024658	-0.41184	-0.00020314	-0.91175	-0.00044972	493.25090871375494	108.07	1.9397	108.83	108.1	110.04	0.75436					96	37	4	0	0	0	0.62155	1	40767	40767		19.257	2.3147	1	26419000	+		6491	19453	4493	4539	6322	6322					-0.005240108331349802
DLPTEFKNN	9	Unmodified	_DLPTEFKNN_					0	0	0			REV__ENSG00000064999|ENST00000360359|ANKS1A	REV__ENSG00000064999|ENST00000360359|ANKS1A	MULTI-MSMS	A375_MHC_IP_R2	2	540.1653442382812	2	539.264196	1076.51384	-0.67965	-0.00036651	-0.4096	-0.00022088	-1.0892	-0.00058739	539.2639111872599	85.89	0.86427	86.623	86.236	87.1	0.733					38	16	4	0	0	0	0.38603	1	32612	32612		25.399	1.3787	1	3779400	+		6492	16485	4494	4540	6323	6323					-0.021357416616638147
DLPTPAYFVTT	11	Unmodified	_DLPTPAYFVTT_					0	0	0			REV__tr|U7T3J2|U7T3J2_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00296PE=3SV=1	REV__tr|U7T3J2|U7T3J2_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00296PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	613.7877807617188	2	612.810979	1223.6074	-0.47081	-0.00028852	0.059581	3.6512E-05	-0.41122	-0.000252	612.8108415079453	91.204	1.1621	91.204	90.845	92.007	0					57	22	4	0	0	0	0.73078	1	33806	33806		8.1555	0.24537	1	9043700	+		6493	28776	4495	4541	6324	6324					0.0045455772076365974
DLQAKLQFY	9	Unmodified	_DLQAKLQFY_					0	0	0		PCDHGB2|p.P684L|1|0.39|ENSG00000253910|chr5:141362186-141362186|C/T|missense_variant	PCDHGB2|p.P684L|1|0.39|ENSG00000253910|chr5:141362186-141362186|C/T|missense_variant	PCDHGB2|p.P684L|1|0.39|ENSG00000253910|chr5:141362186-141362186|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	563.6876220703125	2	563.300581	1124.58661	-0.43197	-0.00024333	-0.11498	-6.4769E-05	-0.54695	-0.0003081	563.3003150952953	55.297	0.50684	55.297	54.975	55.482	0					22	9	4	0	0	0	0.55359	1	19835	19835		28.487	6.7402	1	5779400			6494	15141	4496	4542	6325	6325					0.029300121317419325
DLQELFRPF	9	Unmodified	_DLQELFRPF_					0	0	0		ENST00000590158.1_1_19:10225792-10226817:-|nuORF;ENSG00000130811|ENST00000253108|EIF3G	ENST00000590158.1_1_19:10225792-10226817:-|nuORF	ENST00000590158.1_1_19:10225792-10226817:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	584.6825561523438	2	582.806031	1163.59751	-0.34776	-0.00020268	-0.37519	-0.00021866	-0.72296	-0.00042134	582.8057961706834	104.24	0.61089	105.01	104.7	105.31	0.76308					33	11	4	0	0	0	0.65721	1	39391	39391		10.824	2.2306	1	10484000			6495	13782	4497	4543	6326	6326					0.02225414506051493
DLQEQIYL	8	Unmodified	_DLQEQIYL_					0	0	0		nc|ENSG00000075275|Q9NYQ6-2|CELSR1;nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1	nc|ENSG00000075275|Q9NYQ6-2|CELSR1	nc|ENSG00000075275|Q9NYQ6-2|CELSR1	MULTI-SECPEP	A375_MHC_IP_R1	1	511.1806945800781	2	511.263665	1020.51278	-0.55133	-0.00028187	0.54803	0.00028019	-0.0032989	-1.6866E-06	511.263726454688	89.965	0.75883	89.965	89.476	90.235	0					39	14	4	0	0	0	0.8824	1	32928	32928		23.148	0	1	2418200			6496	1605	4498	4544	6327	6327					0.003340439694284214
DLQERLYLN	9	Unmodified	_DLQERLYLN_					0	0	0		ENSG00000143126|ENST00000271332|CELSR2	ENSG00000143126|ENST00000271332|CELSR2	ENSG00000143126|ENST00000271332|CELSR2	MULTI-SECPEP	A375_MHC_IP_R1	1	582.2266845703125	2	582.306395	1162.59824	-0.37389	-0.00021772	0.35497	0.0002067	-0.018916	-1.1015E-05	582.3063011612459	91.24	0.50684	91.24	90.997	91.503	0					14	9	2	0	0	0	0.41434	1	33610	33610		39.95	11.463	1	1693300			6497	5346	4499	4545	6328	6328					0.023442091550805344
DLQGEDELY	9	Unmodified	_DLQGEDELY_					0	0	0			REV__nc|ENSG00000160953|Q2TAK8-2|PWWP3A	REV__nc|ENSG00000160953|Q2TAK8-2|PWWP3A	MULTI-MSMS	A375_MHC_IP_R1	1	541.6826782226562	2	541.237844	1080.46113	-0.50315	-0.00027232	-0.68487	-0.00037068	-1.188	-0.000643	541.2374794432071	105.56	1.168	105.56	104.99	106.16	0					39	22	2	0	0	0	0.4867	1	38885	38885		20.454	4.6064	1	5328000	+		6498	20191	4500	4546	6329	6329					-0.07587744515149097
DLQGKLQLRYQ	11	Unmodified	_DLQGKLQLRYQ_					0	0	0		ENSG00000267855|ENST00000301457|NDUFA7	ENSG00000267855|ENST00000301457|NDUFA7	ENSG00000267855|ENST00000301457|NDUFA7	MSMS	A375_MHC_IP_R1	1	681.400390625	2	681.380426	1360.7463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.66	1	110.66	110.16	111.16	0								0	0	0	0.16138	1	40574	40574		11.495	5.7629	1				6499	9967	4501	4547	6330	6330					0.08035520408952834
DLQHWDSA	8	Unmodified	_DLQHWDSA_					0	0	0		ENSG00000157796|ENST00000399820|WDR19;ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENSG00000157796|ENST00000399820|WDR19	ENSG00000157796|ENST00000399820|WDR19	MSMS	A375_MHC_IP_R2	2	486.19976806640625	2	486.214506	970.414459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.478	1	43.251	42.751	43.751	0.7724								0	0	0	0.16876	1	15802	15802		8.5933	0	1				6500	6266	4502	4548	6331	6331					-0.07193139555761263
DLQHWEVL	8	Unmodified	_DLQHWEVL_					0	0	0			REV__ENSG00000163960|ENST00000296328|UBXN7	REV__ENSG00000163960|ENST00000296328|UBXN7	MULTI-SECPEP	A375_MHC_IP_R2	2	519.697021484375	2	520.263999	1038.51345	-1.0548	-0.00054878	0.028909	1.504E-05	-1.0259	-0.00053374	520.2639340379188	59.219	0.50666	59.966	59.641	60.148	0.74714					18	9	3	0	0	0	0.94479	1	22304	22304		13.508	0	1	3239800	+		6501	20433	4503	4549	6332	6332					-0.0042711659086762666
DLQLIKWLERL	11	Unmodified	_DLQLIKWLERL_					0	0	0		ENST00000531486.1_1_17:45697109-45697154:+|nuORF	ENST00000531486.1_1_17:45697109-45697154:+|nuORF	ENST00000531486.1_1_17:45697109-45697154:+|nuORF	MSMS	A375_MHC_IP_R1	1	713.9781494140625	2	713.924469	1425.83439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.904	1	80.904	80.404	81.404	0								0	0	0	0.16334	1	29560	29560		1.3295	0	1				6502	13171	4504	4550	6333	6333					0.13850140999534233
DLQLRKGDEYF	11	Unmodified	_DLQLRKGDEYF_					0	0	0		ENSG00000010671|ENST00000308731|BTK;nc|ENSG00000010671|Q06187-2|BTK	ENSG00000010671|ENST00000308731|BTK	ENSG00000010671|ENST00000308731|BTK	MSMS	A375_MHC_IP_R1	1	692.5614013671875	2	692.348791	1382.68303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.736	1	82.736	82.236	83.236	0								0	0	0	0.16258	1	30262	30262		5.2969	0.76802	1				6503	985	4505	4551	6334	6334					0.006995349010367136
DLQLVFWVM	9	Unmodified	_DLQLVFWVM_					0	0	0			REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	MULTI-SECPEP	A375_MHC_IP_R2	2	575.658447265625	2	575.801903	1149.58925	-0.10673	-6.1456E-05	2.0853	0.0012007	1.9786	0.0011393	575.8032271802239	92.443	0.50551	93.182	92.886	93.392	0.73901					18	9	3	0	0	0	0.74412	1	35190	35190		14.838	2.5976	1	2211400	+		6504	20461	4506	4552	6335	6335					0.020441442650735553
DLQLVLWAAAV	11	Unmodified	_DLQLVLWAAAV_					0	0	0		DSC3|p.N853Tfs*27|1|0.63|ENSG00000134762|chr18:30994308-30994308|T/-|frameshift_variant	DSC3|p.N853Tfs*27|1|0.63|ENSG00000134762|chr18:30994308-30994308|T/-|frameshift_variant	DSC3|p.N853Tfs*27|1|0.63|ENSG00000134762|chr18:30994308-30994308|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	599.2191162109375	2	599.845156	1197.67576	-0.43023	-0.00025807	0.33373	0.00020018	-0.096507	-5.7889E-05	600.3464273754962	91.896	0.40361	92.633	92.379	92.782	0.73679					15	7	3	0	0	0	0.88813	1	34869	34869		19.362	19.362	1	2335300			6505	803	4507	4553	6336	6336					0.08482847091249823
DLQPLPIQK	9	Unmodified	_DLQPLPIQK_					0	0	0		ENSG00000172167|ENST00000305949|MTBP	ENSG00000172167|ENST00000305949|MTBP	ENSG00000172167|ENST00000305949|MTBP	MSMS	A375_MHC_IP_R1	1	526.2003784179688	2	526.310949	1050.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.309	1	60.309	59.809	60.809	0								0	0	0	0.15486	1	21711	21711		9.3831	0.78985	1				6506	7683	4508	4554	6337	6337					0.08406602511422534
DLQPNTEY	8	Unmodified	_DLQPNTEY_					0	0	0		nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MULTI-MSMS	A375_MHC_IP_R2	2	490.6587829589844	2	490.221997	978.429441	-1.0036	-0.00049201	0.10178	4.9894E-05	-0.90187	-0.00044212	490.2219869281532	52.547	0.45625	53.299	53.083	53.54	0.75225					12	8	2	0	0	0	0.7338	1	19766	19766		24.674	3.8027	1	865760			6507	5339	4509	4555	6338	6338					-0.06063692478426219
DLQQWIEVD	9	Unmodified	_DLQQWIEVD_					0	0	0		ENSG00000121898|ENST00000241305|CPXM2;ENST00000368854.7_1_10:125528237-125699754:-|nuORF	ENSG00000121898|ENST00000241305|CPXM2	ENSG00000121898|ENST00000241305|CPXM2	MULTI-SECPEP	A375_MHC_IP_R1	1	382.6087951660156	3	382.520628	1144.54005	0.67973	0.00026001	0.021992	8.4123E-06	0.70172	0.00026842	382.52052181013937	39.02	0.35563	39.02	38.832	39.187	0					12	6	3	0	0	0	0.7911	1	13355	13355		4.5289	4.5289	1	2304300			6508	3746	4510	4556	6339	6339					-0.026434724901946538
DLQTFFLPFW	10	Unmodified	_DLQTFFLPFW_					0	0	0		nc|ENSG00000178287|Q6PDA7|SPAG11A	nc|ENSG00000178287|Q6PDA7|SPAG11A	nc|ENSG00000178287|Q6PDA7|SPAG11A	MSMS	A375_MHC_IP_R2	2	657.2307739257812	2	657.331882	1312.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.229	1	78.971	78.471	79.471	0.74293								0	0	0	0.15372	1	29706	29706		8.7454	0.58988	1				6509	14790	4511	4557	6340	6340					0.005391581999219852
DLQWLVQP	8	Unmodified	_DLQWLVQP_					0	0	0		nc|ENSG00000125740|P53539-11|FOSB;nc|ENSG00000125740|P53539-6|FOSB;nc|ENSG00000125740|P53539-10|FOSB;nc|ENSG00000125740|P53539-4|FOSB;nc|ENSG00000125740|P53539-2|FOSB;ENSG00000125740|ENST00000353609|FOSB;nc|ENSG00000170345|P01100-3|FOS;ENSG00000170345|ENST00000303562|FOS	nc|ENSG00000125740|P53539-11|FOSB	nc|ENSG00000125740|P53539-11|FOSB	MULTI-SECPEP	A375_MHC_IP_R1	1	500.1278381347656	2	499.768917	997.523281	-0.58539	-0.00029256	-0.37919	-0.00018951	-0.96458	-0.00048207	499.7689600175172	85.553	0.35509	85.553	85.362	85.717	0					11	6	2	0	0	0	0.86263	1	31290	31290		20.454	0	1	806250			6510	3984	4512	4558	6341	6341					0.024420714145207967
DLQYHTHY	8	Unmodified	_DLQYHTHY_					0	0	0		nc|ENSG00000168077|Q6AZY7-2|SCARA3;ENSG00000168077|ENST00000301904|SCARA3	nc|ENSG00000168077|Q6AZY7-2|SCARA3	nc|ENSG00000168077|Q6AZY7-2|SCARA3	MULTI-SECPEP	A375_MHC_IP_R2	2	538.2184448242188	2	538.743431	1075.47231	-0.79139	-0.00042635	0.15547	8.3757E-05	-0.63592	-0.0003426	538.743499720149	88.661	0.6081	89.393	88.976	89.584	0.7318					19	11	2	0	0	0	0.96266	1	33709	33709		7.2892	0	1	1589300			6511	7260	4513	4559	6342	6342					-0.06240877630330033
DLQYKYLRFLL	11	Unmodified	_DLQYKYLRFLL_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	A375_MHC_IP_R2	2	736.8150634765625	2	736.41902	1470.82349	-0.6364	-0.00046866	-3.0038	-0.002212	-3.6402	-0.0026807	736.4179721810617	138.76	0.25095	138.82	138.7	138.95	0.059906					9	4	3	0	0	0	0.99738	1	54428	54428		5.2969	0	1	1372400			6512	7983	4514	4560	6343	6343					0.10690738625271479
DLQYVKKQI	9	Unmodified	_DLQYVKKQI_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.M1167Ffs*18|1|0.44|ENSG00000023516|chr13:42302242-42302251|CTCATGCGAT/-|frameshift_variant;AKAP11|p.E913Rfs*39|1|0.3|ENSG00000023516|chr13:42301482-42301482|G/-|frameshift_variant	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	MULTI-MSMS	A375_MHC_IP_R2	2	378.940185546875	3	378.888763	1133.64446	-0.11853	-4.4909E-05	0.10464	3.9647E-05	-0.013888	-5.2621E-06	378.88876004002515	37.95	0.41218	38.725	38.483	38.895	0.77451					19	7	3	0	0	0	0.7235	1	13843	13843		4.897	0	1	8720500			6513	1078	4515	4561	6344	6344					0.08298274057187882
DLRAAIVY	8	Unmodified	_DLRAAIVY_					0	0	0		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	461.16314697265625	2	460.763635	919.512717	-0.1678	-7.7318E-05	0.075769	3.4912E-05	-0.092034	-4.2406E-05	460.76351592536037	62.128	0.76807	62.128	61.737	62.505	0					36	14	4	0	0	0	0.86263	1	22397	22397		20.454	0	1	8007000			6514	2789	4516	4562	6345	6345					0.04974088760093309
DLRAAIVY	8	Unmodified	_DLRAAIVY_					0	0	0		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	461.1629638671875	2	460.763635	919.512717	-0.76136	-0.00035081	0.33786	0.00015568	-0.4235	-0.00019513	460.7636647361824	61.257	1.0578	62.002	61.668	62.726	0.74503					43	20	4	0	0	0	0.86263	1	23174	23174		26.884	0	1	9208500			6515	2789	4516	4562	6346	6346					0.04974088760093309
DLRALLKRKHR	11	Unmodified	_DLRALLKRKHR_					0	0	0		ENST00000502574.1_1_15:65134152-65214443:+|nuORF;nc|ENSG00000241839|Q8TD55-2|PLEKHO2;ENSG00000241839|ENST00000323544|PLEKHO2	ENST00000502574.1_1_15:65134152-65214443:+|nuORF	ENST00000502574.1_1_15:65134152-65214443:+|nuORF	MSMS	A375_MHC_IP_R1	1	703.447265625	2	703.446769	1404.87898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.537	1	69.537	69.037	70.037	0								0	0	0	0.16334	1	25236	25236		1.3295	0.92882	1				6516	9787	4517	4563	6347	6347					0.19274009656237467
DLRCYEYNRWM	11	Unmodified	_DLRCYEYNRWM_					0	0	0			REV__ENSG00000153147|ENST00000283131|SMARCA5	REV__ENSG00000153147|ENST00000283131|SMARCA5	MSMS	A375_MHC_IP_R2	2	774.8038940429688	2	774.839753	1547.66495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.91	1	115.6	115.1	116.1	0.68999								0	0	0	0.16334	1	43317	43317		1.3295	0	1		+		6517	19829	4518	4564	6348	6348					-0.08697246616975463
DLREDRWKWVK	11	Unmodified	_DLREDRWKWVK_					0	0	0			REV__ENST00000559700.5_1_15:78584919-78588040:-|nuORF	REV__ENST00000559700.5_1_15:78584919-78588040:-|nuORF	MSMS	A375_MHC_IP_R2	2	511.1461486816406	3	510.944042	1529.8103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.602	1	54.353	53.853	54.853	0.75105								0	0	0	0.16334	1	20233	20233		1.3296	0.11481	1		+		6518	19209	4519	4565	6349	6349					0.06658300565868558
DLREVLSKY	9	Unmodified	_DLREVLSKY_					0	0	0		CNGA4|p.E456K|1|0.35|ENSG00000132259|chr11:6244047-6244047|G/A|missense_variant	CNGA4|p.E456K|1|0.35|ENSG00000132259|chr11:6244047-6244047|G/A|missense_variant	CNGA4|p.E456K|1|0.35|ENSG00000132259|chr11:6244047-6244047|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	562.2114868164062	2	561.811313	1121.60807	-0.46198	-0.00025954	0.19432	0.00010917	-0.26765	-0.00015037	561.8114383825914	43.78	0.71429	43.78	43.553	44.267	0					31	13	4	0	0	0	0.030766	1	15222	15222		88.364	15.167	1	18253000			6519	546	4520	4566	6350	6350					0.05213397160491695
DLREVLSKY	9	Unmodified	_DLREVLSKY_					0	0	0		CNGA4|p.E456K|1|0.35|ENSG00000132259|chr11:6244047-6244047|G/A|missense_variant	CNGA4|p.E456K|1|0.35|ENSG00000132259|chr11:6244047-6244047|G/A|missense_variant	CNGA4|p.E456K|1|0.35|ENSG00000132259|chr11:6244047-6244047|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	561.2269897460938	2	561.811313	1121.60807	-0.49593	-0.00027862	-0.016044	-9.0138E-06	-0.51197	-0.00028763	561.8113130295008	42.977	0.70902	43.749	43.421	44.13	0.7724					32	13	4	0	0	0	0.1732	1	16005	16005		55.249	13.409	1	17963000			6520	546	4520	4566	6351	6351					0.05213397160491695
DLREWPFLLSL	11	Unmodified	_DLREWPFLLSL_					0	0	0		ENST00000484676.1_1_1:6687887-6688316:+|nuORF	ENST00000484676.1_1_1:6687887-6688316:+|nuORF	ENST00000484676.1_1_1:6687887-6688316:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	695.2811889648438	2	694.88227	1387.74999	-0.55702	-0.00038706	-1.3572	-0.00094311	-1.9142	-0.0013302	694.881467200108	83.049	0.45358	83.049	82.772	83.226	0					14	8	2	0	0	0	0.51633	1	30408	30408		29.841	14.592	1	3065100			6521	12565	4521	4567	6352	6352					0.0716219018281663
DLRGDNDKDYD	11	Unmodified	_DLRGDNDKDYD_					0	0	0			REV__ENST00000560833.1_1_15:77236155-77240950:+|nuORF	REV__ENST00000560833.1_1_15:77236155-77240950:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	442.9249267578125	3	442.524989	1324.55314	-0.6584	-0.00029136	0.74375	0.00032913	0.085348	3.7769E-05	442.525280658745	33.317	0.50826	34.069	33.84	34.348	0.75225					22	9	3	0	0	0	0.99778	1	11921	11921		3.8459	0.77364	1	6046500	+		6522	18024	4522	4568	6353	6353					-0.09615686168740467
DLRGLPTL	8	Unmodified	_DLRGLPTL_					0	0	0			REV__nc|ENSG00000154845|Q8TF05-2|PPP4R1	REV__nc|ENSG00000154845|Q8TF05-2|PPP4R1	MULTI-SECPEP	A375_MHC_IP_R2	2	443.1633605957031	2	442.763635	883.512717	-0.41471	-0.00018362	-0.02564	-1.1352E-05	-0.44035	-0.00019497	442.7636565091099	74.702	0.40719	75.44	75.214	75.621	0.73752					13	7	2	0	0	0	0.4193	1	28363	28363		68.081	13.307	1	1653700	+		6523	19902	4523	4569	6354	6354					0.06630088760084618
DLRGLPTL	8	Unmodified	_DLRGLPTL_					0	0	0			REV__nc|ENSG00000154845|Q8TF05-2|PPP4R1	REV__nc|ENSG00000154845|Q8TF05-2|PPP4R1	MULTI-MATCH	A375_MHC_IP_R1	1		2	442.763635	883.512717	-0.089796	-3.9758E-05	-0.41917	-0.00018559	-0.50896	-0.00022535	442.76352438958793	75.604	0.50281	75.604	75.312	75.815	0	0.082378	-0.00024016	NaN	68.081	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1417900	+		6524	19902	4523	4569							0.06630088760084618
DLRGLRLYV	9	Unmodified	_DLRGLRLYV_					0	0	0			REV__tr|U7SXB4|U7SXB4_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00935PE=4SV=1	REV__tr|U7SXB4|U7SXB4_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00935PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	553.2294311523438	2	552.82984	1103.64513	-0.52497	-0.00029022	0.039995	2.211E-05	-0.48497	-0.00026811	552.8296871907737	59.704	0.96582	59.704	59.143	60.109	0					30	18	3	0	0	0	0.56537	1	21481	21481		22.736	4.5899	1	3130000	+		6525	28619	4524	4570	6355	6355					0.09745113496887825
DLRGRLSF	8	Unmodified	_DLRGRLSF_					0	0	0			REV__PRAME|p.F308S|1|0.51|ENSG00000185686|chr22:22549756-22549756|A/G|missense_variant	REV__PRAME|p.F308S|1|0.51|ENSG00000185686|chr22:22549756-22549756|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	482.3302307128906	2	482.272158	962.529764	-0.63279	-0.00030518	-0.26824	-0.00012937	-0.90103	-0.00043454	482.2720847545096	32.66	0.50896	33.397	33.162	33.671	0.73691					19	9	3	0	0	0	0.91495	1	11737	11737		12.532	0	1	6337700	+		6526	27831	4525	4571	6356	6356					0.04700009365888036
DLRHLLVGKIL	11	Unmodified	_DLRHLLVGKIL_					0	0	0		nc|ENSG00000157214|Q8NFT2-3|STEAP2;nc|ENSG00000157214|Q8NFT2-2|STEAP2;ENSG00000157214|ENST00000394621|STEAP2	nc|ENSG00000157214|Q8NFT2-3|STEAP2	nc|ENSG00000157214|Q8NFT2-3|STEAP2	MSMS	A375_MHC_IP_R2	2	639.27294921875	2	638.908622	1275.80269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.764	1	96.515	96.015	97.015	0.75045								0	0	0	0.16307	1	36372	36372		2.7352	0.23671	1				6527	6233	4526	4572	6357	6357					0.17582193036287208
DLRILLIILL	10	Unmodified	_DLRILLIILL_					0	0	0			REV__ENSG00000239590|ENST00000340750|OR1J4	REV__ENSG00000239590|ENST00000340750|OR1J4	MULTI-MSMS	A375_MHC_IP_R2	2	597.9171752929688	2	597.912842	1193.81113	-0.40004	-0.00023919	0.46256	0.00027657	0.062528	3.7387E-05	597.9136263060158	110.13	0.15326	110.87	110.78	110.94	0.73691					4	2	2	0	0	0	0.72645	1	41561	41561		0.45834	0	1	948360	+		6528	22771	4527	4573	6358	6358					0.22197746952929265
DLRIVEPLKDI	11	Unmodified	_DLRIVEPLKDI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;TTN|p.L14011*|1|0.26|ENSG00000155657|chr2:178618595-178618595|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	A375_MHC_IP_R2	2	655.8095703125	2	655.887552	1309.76055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.761	1	96.512	96.012	97.012	0.75045								0	0	0	0.16273	1	36371	36371		4.5289	0.93237	1				6529	6151;14694	4528	4574	6359	6359					0.11806172837236772
DLRLASRVY	9	Unmodified	_DLRLASRVY_					0	0	0		ENSG00000139865|ENST00000553443|TTC6;ENST00000533625.5_1_14:38165939-38343677:+|nuORF	ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	MULTI-SECPEP	A375_MHC_IP_R2	2	547.1695556640625	2	546.811648	1091.60874	-0.94275	-0.00051551	-2.7349	-0.0014955	-3.6777	-0.002011	546.8099272556642	65.509	0.30435	66.248	66.121	66.425	0.73811					8	5	2	0	0	0	0.76187	1	24901	24901		11.64	6.8843	1	460870			6530	5115	4529	4575	6360	6360					0.06660236600191638
DLRLAWDSR	9	Unmodified	_DLRLAWDSR_					0	0	0		ZC3H6|p.P785S|1|0.24|ENSG00000188177|chr2:112331271-112331271|C/T|missense_variant	ZC3H6|p.P785S|1|0.24|ENSG00000188177|chr2:112331271-112331271|C/T|missense_variant	ZC3H6|p.P785S|1|0.24|ENSG00000188177|chr2:112331271-112331271|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	377.2679138183594	3	377.868362	1130.58326	0.42327	0.00015994	-0.050903	-1.9235E-05	0.37237	0.00014071	377.86833603488225	36.007	0.86691	36.007	35.472	36.339	0					36	16	3	0	0	0	0.74412	1	12034	12034		10.151	10.151	1	7906200			6531	30188	4530	4576	6361	6361					0.023187620777662232
DLRLIDSSY	9	Unmodified	_DLRLIDSSY_					0	0	0		ENST00000578955.1_1_18:19057140-19088617:+|nuORF;nc|ENSG00000141449|Q9C091-3|GREB1L;ENSG00000141449|ENST00000424526|GREB1L	ENST00000578955.1_1_18:19057140-19088617:+|nuORF	ENST00000578955.1_1_18:19057140-19088617:+|nuORF	MSMS	A375_MHC_IP_R2	2	541.2092895507812	2	541.279846	1080.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.248	1	66.985	66.485	67.485	0.73718								0	0	0	0.15142	1	25106	25106		19.257	2.1441	1				6532	5241	4531	4577	6362	6362					0.008088313724556428
DLRLKKVKRML	11	Unmodified	_DLRLKKVKRML_					0	0	0			REV__ENST00000597024.1_1_19:4719861-4722526:-|nuORF	REV__ENST00000597024.1_1_19:4719861-4722526:-|nuORF	MSMS	A375_MHC_IP_R2	2	700.4527587890625	2	700.450131	1398.88571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.36	1	113.08	112.58	113.58	0.72458								0	0	0	0.16334	1	42359	42359		1.3295	0.13619	1		+		6533	26469	4532	4578	6363	6363					0.20222186492605942
DLRLLYKRVQH	11	Unmodified	_DLRLLYKRVQH_					0	0	0			REV__ENSG00000146828|ENST00000354161|SLC12A9	REV__ENSG00000146828|ENST00000354161|SLC12A9	MSMS	A375_MHC_IP_R1	1	720.9259643554688	2	720.925335	1439.83612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.78	1	122.78	122.28	123.28	0								0	0	0	0.16297	1	45757	45757		3.2813	0.28607	1		+		6534	19552	4533	4579	6364	6364					0.1337919480815799
DLRMRAMGP	9	Unmodified	_DLRMRAMGP_					0	0	0			REV__ENSG00000188822|ENST00000374472|CNR2	REV__ENSG00000188822|ENST00000374472|CNR2	MULTI-SECPEP	A375_MHC_IP_R2	2	524.1668701171875	2	523.765329	1045.5161	-1.0126	-0.00053035	2.0343	0.0010655	1.0217	0.00053515	523.7672264635676	33.935	0.40371	34.687	34.45	34.853	0.75225					12	7	2	0	0	0	0.62767	1	12207	12207		16.942	0	1	2488400	+		6535	22117	4534	4580	6365	6365					-0.004833077291777954
DLRPEGVYD	9	Unmodified	_DLRPEGVYD_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9;NEDD9|p.P264S|1|0.19|ENSG00000111859|chr6:11191079-11191079|G/A|missense_variant;NEDD9|p.A535Gfs*4|1|0.2|ENSG00000111859|chr6:11190258-11190265|CGTCTTTG/-|frameshift_variant	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MSMS	A375_MHC_IP_R1	1	532.2059326171875	2	532.256371	1062.49819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.201	1	51.201	50.701	51.701	0								0	0	0	0.15486	1	18166	18166		13.042	0.51092	1				6536	3034	4535	4581	6366	6366					-0.030560281787074928
DLRPIFDQF	9	Unmodified	_DLRPIFDQF_					0	0	0			REV__TMEM135|p.P444L|1|0.2|ENSG00000166575|chr11:87321287-87321287|C/T|missense_variant	REV__TMEM135|p.P444L|1|0.2|ENSG00000166575|chr11:87321287-87321287|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	576.2289428710938	2	575.798206	1149.58186	-0.1747	-0.00010059	-0.06766	-3.8959E-05	-0.24236	-0.00013955	575.7981944364114	93.865	0.40667	93.865	93.584	93.991	0					10	7	2	0	0	0	0.41879	1	34467	34467		23.79	12.295	1	1021200	+		6537	20686	4536	4582	6367	6367					0.013051279890078149
DLRPLIWLG	9	Unmodified	_DLRPLIWLG_					0	0	0			REV__ENST00000557682.6_1_15:93442332-93442461:+|nuORF	REV__ENST00000557682.6_1_15:93442332-93442461:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	541.1533203125	2	541.821484	1081.62842	-0.7202	-0.00039022	0.12979	7.0325E-05	-0.5904	-0.00031989	541.8215159318817	68.36	0.60786	69.095	68.765	69.373	0.73511					27	11	3	0	0	0	0.73926	1	25996	25996		13.042	4.4492	1	9928700	+		6538	26128	4537	4583	6368	6368					0.09086612610940392
DLRQRLLRRLV	11	Unmodified	_DLRQRLLRRLV_					0	0	0			REV__ENST00000391858.8_1_1:231473224-231473434:+|nuORF	REV__ENST00000391858.8_1_1:231473224-231473434:+|nuORF	MSMS	A375_MHC_IP_R2	2	719.4618530273438	2	719.459876	1436.9052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.891	1	81.636	81.136	82.136	0.74474								0	0	0	0.16334	1	30716	30716		1.3295	0	1		+		6539	24265	4538	4584	6369	6369					0.20422278827709306
DLRRGKLKK	9	Unmodified	_DLRRGKLKK_					0	0	0			REV__SH3GL3|p.E162K|2|0.41|ENSG00000140600|chr15:83576601-83576601|G/A|missense_variant	REV__SH3GL3|p.E162K|2|0.41|ENSG00000140600|chr15:83576601-83576601|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	372.2560729980469	3	371.912013	1112.71421	0.2686	9.9896E-05	0.082504	3.0684E-05	0.3511	0.00013058	371.91209603489034	40.118	0.51023	40.118	39.948	40.458	0					10	9	2	0	0	0	0.81368	1	13821	13821		0.86438	0.86438	1	862880	+		6540	27959	4539	4585	6370	6370					0.16236197516468565
DLRRLGLRLR	10	Unmodified	_DLRRLGLRLR_					0	0	0		ENSG00000175536|ENST00000310109|LIPT2	ENSG00000175536|ENST00000310109|LIPT2	ENSG00000175536|ENST00000310109|LIPT2	MSMS	A375_MHC_IP_R1	1	634.2491455078125	2	634.407112	1266.79967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.129	1	85.129	84.629	85.629	0								0	0	0	0.15591	1	31196	31196		1.6526	0	1				6541	7968	4540	4586	6371	6371					0.17694362702104627
DLRRRERQFRQ	11	Unmodified	_DLRRRERQFRQ_					0	0	0		AZU1|p.S93F|1|0.19|ENSG00000172232|chr19:829624-829624|C/T|missense_variant	AZU1|p.S93F|1|0.19|ENSG00000172232|chr19:829624-829624|C/T|missense_variant	AZU1|p.S93F|1|0.19|ENSG00000172232|chr19:829624-829624|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	780.2908935546875	2	780.434921	1558.85529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.178	1	80.922	80.422	81.422	0.74474								0	0	0	0.16353	1	30438	30438		0.35063	0.043601	1				6542	221	4541	4587	6372	6372					0.09821544151782291
DLRRRERQFRQ	11	Unmodified	_DLRRRERQFRQ_					0	0	0		AZU1|p.S93F|1|0.19|ENSG00000172232|chr19:829624-829624|C/T|missense_variant	AZU1|p.S93F|1|0.19|ENSG00000172232|chr19:829624-829624|C/T|missense_variant	AZU1|p.S93F|1|0.19|ENSG00000172232|chr19:829624-829624|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	780.4297485351562	2	780.434921	1558.85529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.95	1	104.71	104.21	105.21	0.76428								0	0	0	0.16353	1	39345	39345		0.35063	0.043601	1				6543	221	4541	4587	6373	6373					0.09821544151782291
DLRRRKKL	8	Unmodified	_DLRRRKKL_					0	0	0			REV__nc|ENSG00000043514|Q9H3H1-6|TRIT1	REV__nc|ENSG00000043514|Q9H3H1-6|TRIT1	MSMS	A375_MHC_IP_R2	2	362.3007507324219	3	362.240241	1083.69889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.264	1	26.924	26.424	27.424	0.65992								0	0	0	0.16876	1	8860	8860		10.824	1.8477	1		+		6544	16351	4542	4588	6374	6374					0.16039330719286227
DLRSDEFW	8	Unmodified	_DLRSDEFW_					0	0	0			REV__ENSG00000188505|ENST00000339852|NCCRP1	REV__ENSG00000188505|ENST00000339852|NCCRP1	MULTI-SECPEP	A375_MHC_IP_R2	2	534.6166381835938	2	534.243264	1066.47197	-0.76361	-0.00040795	-0.0093378	-4.9886E-06	-0.77295	-0.00041294	534.24301898519	62.816	0.45442	63.558	63.383	63.838	0.74263					10	8	2	0	0	0	0.972	1	23761	23761		1.6526	0	1	764700	+		6545	22094	4543	4589	6375	6375					-0.05860297350182009
DLRTWNYSP	9	Unmodified	_DLRTWNYSP_					0	0	0			REV__ENSG00000143217|ENST00000368012|NECTIN4	REV__ENSG00000143217|ENST00000368012|NECTIN4	MULTI-SECPEP	A375_MHC_IP_R1	1	575.7107543945312	2	576.277638	1150.54072	-0.1557	-8.9724E-05	1.9919	0.0011479	1.8362	0.0010582	576.7808471207695	55.411	0.91531	55.411	55.075	55.991	0					51	17	4	0	0	0	0.67539	1	19961	19961		21.537	1.1224	1	10856000	+		6546	19341	4544	4590	6376	6376					-0.028526330504973885
DLRVLCSIF	9	Unmodified	_DLRVLCSIF_					0	0	0			REV__ENSG00000256812|ENST00000457326|CAPNS2	REV__ENSG00000256812|ENST00000457326|CAPNS2	MULTI-SECPEP	A375_MHC_IP_R2	2	355.579345703125	3	355.86356	1064.56885	-0.58161	-0.00020697	-0.2344	-8.3414E-05	-0.81601	-0.00029039	356.1977844057549	26.577	0.55973	27.237	26.957	27.517	0.65992					19	10	2	0	0	0	0.73363	1	8886	8886		7.1017	4.3665	1	7036300	+		6547	22885	4545	4591	6377	6377					0.03914973605242267
DLRVLRES	8	Unmodified	_DLRVLRES_					0	0	0		ENSG00000087053|ENST00000346299|MTMR2;ENST00000485740.5_1_11:95598759-95621397:-|nuORF	ENSG00000087053|ENST00000346299|MTMR2	ENSG00000087053|ENST00000346299|MTMR2	MULTI-MSMS	A375_MHC_IP_R1	1	494.6824645996094	2	494.282723	986.550893	-0.39794	-0.0001967	0.034208	1.6908E-05	-0.36374	-0.00017979	494.2826297478287	118.85	1.7271	118.85	118.42	120.15	0					48	33	2	0	0	0	0.77643	1	43819	43819		7.9102	0.62092	1	16742000			6548	1850	4546	4592	6378	6378					0.057079746747604077
DLRVLRES	8	Unmodified	_DLRVLRES_					0	0	0		ENSG00000087053|ENST00000346299|MTMR2;ENST00000485740.5_1_11:95598759-95621397:-|nuORF	ENSG00000087053|ENST00000346299|MTMR2	ENSG00000087053|ENST00000346299|MTMR2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	494.282723	986.550893	-0.39478	-0.00019513	-0.13778	-6.8104E-05	-0.53256	-0.00026324	494.2825620672251	118.44	1.2651	119.04	118.44	119.71	0.60909	0.095053	-8.9378E-05	NaN	7.9102	46	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21257000			6549	1850	4546	4592							0.057079746747604077
DLRVVQIY	8	Unmodified	_DLRVVQIY_					0	0	0		ENST00000502187.5_1_14:98426074-98426648:-|nuORF	ENST00000502187.5_1_14:98426074-98426648:-|nuORF	ENST00000502187.5_1_14:98426074-98426648:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.6243591308594	2	503.290017	1004.56548	-0.47496	-0.00023904	0.16164	8.135E-05	-0.31332	-0.00015769	503.2901569106538	68.523	0.81043	68.523	68.26	69.07	0					37	15	4	0	0	0	0.90775	1	24804	24804		14.838	0	1	13477000			6550	12788	4547	4593	6379	6379					0.06338046822907017
DLRVWRKQY	9	Unmodified	_DLRVWRKQY_					0	0	0			REV__nc|ENSG00000186635|Q96P48-2|ARAP1	REV__nc|ENSG00000186635|Q96P48-2|ARAP1	MULTI-MSMS	A375_MHC_IP_R2	2	421.92047119140625	3	421.903406	1262.68839	-0.37314	-0.00015743	0.41169	0.00017369	0.038551	1.6265E-05	421.90346551822057	23.915	0.61126	24.545	24.333	24.944	0.63014					22	11	3	0	0	0	0.69317	1	7852	7852		7.609	7.609	1	10849000	+		6551	21978	4548	4594	6380	6380					0.06755303274189828
DLRWRFWWEY	10	Unmodified	_DLRWRFWWEY_					0	0	0			REV__ENSG00000127995|ENST00000297273|CASD1	REV__ENSG00000127995|ENST00000297273|CASD1	MSMS	A375_MHC_IP_R2	2	519.6698608398438	3	519.585966	1555.73607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.708	1	75.446	74.946	75.946	0.73752								0	0	0	0.15577	1	28356	28356		2.086	0.34373	1		+		6552	18438	4549	4595	6381	6381					-0.019570425256233648
DLRYLWRPA	9	Unmodified	_DLRYLWRPA_					0	0	0		ENSG00000164123|ENST00000434826|C4orf45	ENSG00000164123|ENST00000434826|C4orf45	ENSG00000164123|ENST00000434826|C4orf45	MULTI-SECPEP	A375_MHC_IP_R1	1	594.6533813476562	2	595.327465	1188.64038	-0.35895	-0.00021369	-0.83296	-0.00049589	-1.1919	-0.00070958	595.826312715833	59.677	0.20332	59.677	59.548	59.752	0					5	3	2	0	0	0	0.77834	1	21431	21431		0.52476	0	1	462920			6553	6786	4550	4596	6382	6382					0.05360229354141666
DLSAAASLAL	10	Unmodified	_DLSAAASLAL_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-MSMS	A375_MHC_IP_R1	1	466.6894836425781	2	466.258382	930.502212	-0.15722	-7.3304E-05	-0.33909	-0.0001581	-0.49631	-0.00023141	466.2581664984535	88.58	0.60985	88.58	88.154	88.764	0					22	11	3	0	0	0	0.60556	1	32546	32546		20.454	0	1	2107100			6554	976	4551	4597	6383	6383					0.034180613149942474
DLSAFSSWEV	10	Unmodified	_DLSAFSSWEV_					0	0	0		ENST00000470585.5_1_1:38445118-38455637:-|nuORF	ENST00000470585.5_1_1:38445118-38455637:-|nuORF	ENST00000470585.5_1_1:38445118-38455637:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	571.1638793945312	2	570.764029	1139.5135	-0.7897	-0.00045073	-0.42031	-0.0002399	-1.21	-0.00069063	570.7641148755527	53.604	0.82016	54.355	53.995	54.815	0.75105					40	15	4	0	0	0	0.87163	1	20209	20209		13.906	1.6654	1	9406800			6555	12337	4552	4598	6384	6384					-0.05067161381521146
DLSAPDGMQP	10	Unmodified	_DLSAPDGMQP_					0	0	0			REV__nc|ENSG00000187239|Q96RU3-4|FNBP1	REV__nc|ENSG00000187239|Q96RU3-4|FNBP1	MULTI-MSMS	A375_MHC_IP_R1	1	516.1510620117188	2	515.729132	1029.44371	-0.48073	-0.00024793	0.56626	0.00029204	0.085531	4.4111E-05	515.7295581134921	62.008	0.46088	62.008	61.788	62.249	0					12	8	2	0	0	0	0.70651	1	22459	22459		9.3831	0.035688	1	894320	+		6556	22014	4553	4599	6385	6385					-0.0698336332177405
DLSCNKIRY	9	Unmodified	_DLSCNKIRY_					0	0	0		ENST00000583204.5_1_17:30348129-30360999:+|nuORF;ENSG00000185158|ENST00000543378|LRRC37B;nc|ENSG00000185158|Q96QE4|LRRC37B	ENST00000583204.5_1_17:30348129-30360999:+|nuORF	ENST00000583204.5_1_17:30348129-30360999:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	556.206298828125	2	556.281866	1110.54918	-1.0003	-0.00055646	-0.11159	-6.2073E-05	-1.1119	-0.00061853	556.7822947165372	54.413	0.45445	55.164	54.916	55.37	0.75075					16	8	3	0	0	0	0.73363	1	20485	20485		6.7232	0	1	1297500			6557	8647	4554	4600	6386	6386					-0.0016740240550916496
DLSDRLLQY	9	Unmodified	_DLSDRLLQY_					0	0	0			REV__nc|ENSG00000135108|O94952|FBXO21	REV__nc|ENSG00000135108|O94952|FBXO21	MULTI-SECPEP	A375_MHC_IP_R2	2	562.2110595703125	2	561.793121	1121.57169	-0.5694	-0.00031988	2.9829	0.0016758	2.4135	0.0013559	562.2971783157733	78.095	0.71554	78.838	78.468	79.183	0.74293					20	13	2	0	0	0	0.4261	1	29701	29701		37.974	11.09	1	1867900	+		6558	18824	4555	4601	6387	6387					0.015765202637794573
DLSETGRRFEQ	11	Unmodified	_DLSETGRRFEQ_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-MSMS	A375_MHC_IP_R1	1	446.95281982421875	3	446.55299	1336.63714	-0.18916	-8.4469E-05	-0.1486	-6.6359E-05	-0.33776	-0.00015083	446.5528294964777	25.6	0.50875	25.6	25.408	25.917	0					17	9	3	0	0	0	0.73111	1	7512	7512		7.846	0.41697	1	4847300	+		6559	21972	4556	4602	6388	6388					-0.017711102811972523
DLSGAGDP	8	Unmodified	_DLSGAGDP_					0	0	0		PAIP1|p.G440R|1|0.12|ENSG00000172239|chr5:43529814-43529814|C/T|missense_variant;PAIP1|p.G440E|1|0.12|ENSG00000172239|chr5:43529813-43529813|C/T|missense_variant;nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF;ENSG00000172239|ENST00000306846|PAIP1	PAIP1|p.G440R|1|0.12|ENSG00000172239|chr5:43529814-43529814|C/T|missense_variant	PAIP1|p.G440R|1|0.12|ENSG00000172239|chr5:43529814-43529814|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	732.24853515625	1	731.320625	730.313348	-0.56152	-0.00041065	3.4707	0.0025382	2.9092	0.0021276	731.3219188155598	99.569	0.61018	100.33	100.12	100.73	0.76278					12	11	2	0	0	0	0.77603	1	37854	37854		9.3474	0	1	897890			6560	7692	4557	4603	6389	6389					-0.06259591258458386
DLSGKVSERIY	11	Unmodified	_DLSGKVSERIY_					0	0	0			REV__ENSG00000043093|ENST00000292782|DCUN1D1	REV__ENSG00000043093|ENST00000292782|DCUN1D1	MSMS	A375_MHC_IP_R1	1	633.7979736328125	2	633.838059	1265.66157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.485	1	81.485	80.985	81.985	0								0	0	0	0.15016	1	29777	29777		20.415	2.2682	1		+		6561	16350	4558	4604	6390	6390					0.03936149872333772
DLSHLRAHL	9	Unmodified	_DLSHLRAHL_					0	0	0			REV__ENSG00000157881|ENST00000378466|PANK4	REV__ENSG00000157881|ENST00000378466|PANK4	MULTI-SECPEP	A375_MHC_IP_R2	2	531.6553955078125	2	531.296165	1060.57778	-0.59553	-0.0003164	0.87965	0.00046735	0.28412	0.00015095	531.2965959063332	73.331	0.662	74.067	73.785	74.447	0.73541					20	12	2	0	0	0	0.58271	1	27814	27814		20.454	0	1	1821400	+		6562	20051	4559	4605	6391	6391					0.04991083285949571
DLSIKTFVSL	10	Unmodified	_DLSIKTFVSL_					0	0	0			REV__nc|ENSG00000154025|A0PJK1-5|SLC5A10	REV__nc|ENSG00000154025|A0PJK1-5|SLC5A10	MULTI-SECPEP	A375_MHC_IP_R2	2	561.294921875	2	561.823889	1121.63323	-0.61318	-0.0003445	-0.78945	-0.00044353	-1.4026	-0.00078803	562.3235944029872	80.482	0.15342	81.226	81.112	81.265	0.74474					4	2	2	0	0	0	0.88918	1	30532	30532		5.2969	2.0156	1	1120200	+		6563	19862	4560	4606	6392	6392					0.07727451963069143
DLSLFRWNQRY	11	Unmodified	_DLSLFRWNQRY_					0	0	0			REV__ENST00000512260.5_2_5:175603743-175612170:-|nuORF	REV__ENST00000512260.5_2_5:175603743-175612170:-|nuORF	MSMS	A375_MHC_IP_R1	1	749.783935546875	2	749.3835	1496.75245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.14	1	84.14	83.64	84.64	0								0	0	0	0.16297	1	30811	30811		3.2813	0	1		+		6564	25623	4561	4607	6393	6393					0.023940386404774472
DLSLLNPD	8	Unmodified	_DLSLLNPD_					0	0	0			REV__ENSG00000177239|ENST00000371589|MAN1B1	REV__ENSG00000177239|ENST00000371589|MAN1B1	MULTI-MSMS	A375_MHC_IP_R1	1	886.8551025390625	1	886.451639	885.444362	-0.097806	-8.67E-05	3.3272	0.0029494	3.2294	0.0028627	886.455304754233	110.86	0.51102	110.86	110.65	111.16	0					12	9	2	0	0	0	0.70843	1	40693	40693		32.117	1.8922	1	2055200	+		6565	21448	4562	4608	6394	6394					-0.002942006104262873
DLSLLNPD	8	Unmodified	_DLSLLNPD_					0	0	0			REV__ENSG00000177239|ENST00000371589|MAN1B1	REV__ENSG00000177239|ENST00000371589|MAN1B1	MULTI-MATCH	A375_MHC_IP_R2	2		1	886.451639	885.444362	-0.34476	-0.00030561	3.9751	0.0035238	3.6304	0.0032181	886.4550602385145	110.07	0.35774	110.81	110.63	110.99	0.73692	-0.02663	0.0001354	NaN	32.117	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2729300	+		6566	21448	4562	4608							-0.002942006104262873
DLSNTIDT	8	Unmodified	_DLSNTIDT_					0	0	0		tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	MSMS	A375_MHC_IP_R1	1	439.77337646484375	2	439.708722	877.402892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.016	1	23.016	22.516	23.516	0								0	0	0	0.16876	1	6244	6244		19.439	0	1				6567	29463	4563	4609	6395	6395					-0.04071381369760729
DLSPEGRFT	9	Unmodified	_DLSPEGRFT_					0	0	0		nc|ENSG00000180011|Q8N4Q0-2|PTGR3;ENSG00000180011|ENST00000322342|PTGR3	nc|ENSG00000180011|Q8N4Q0-2|PTGR3	nc|ENSG00000180011|Q8N4Q0-2|PTGR3	MULTI-MSMS	A375_MHC_IP_R2	2	511.6811828613281	2	511.251089	1020.48762	-0.69863	-0.00035717	-1.3267	-0.00067826	-2.0253	-0.0010354	511.25053893374314	70.376	0.30508	71.11	70.895	71.2	0.73421					7	5	2	0	0	0	0.51106	1	26693	26693		19.257	1.122	1	1022400			6568	8272	4564	4610	6396	6396					-0.02180010833126289
DLSPEGRFT	9	Unmodified	_DLSPEGRFT_					0	0	0		nc|ENSG00000180011|Q8N4Q0-2|PTGR3;ENSG00000180011|ENST00000322342|PTGR3	nc|ENSG00000180011|Q8N4Q0-2|PTGR3	nc|ENSG00000180011|Q8N4Q0-2|PTGR3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	511.251089	1020.48762	-0.33046	-0.00016895	-0.75349	-0.00038522	-1.0839	-0.00055417	511.2506475298584	71.219	0.30773	71.219	71.005	71.313	0	0.054703	0.00036208	NaN	19.257	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	538250			6569	8272	4564	4610							-0.02180010833126289
DLSQQLDGL	9	Unmodified	_DLSQQLDGL_					0	0	0		ENSG00000187231|ENST00000428443|SESTD1	ENSG00000187231|ENST00000428443|SESTD1	ENSG00000187231|ENST00000428443|SESTD1	MULTI-MSMS	A375_MHC_IP_R1	1	494.6809997558594	2	494.750921	987.48729	-0.53662	-0.00026549	-0.068745	-3.4012E-05	-0.60536	-0.0002995	494.7508507576213	66.172	0.55725	66.172	65.871	66.428	0					17	10	2	0	0	0	0.5339	1	24053	24053		18.135	1.1927	1	1677500			6570	8813	4565	4611	6397	6397					-0.006954305530030069
DLSRAVKNV	9	Unmodified	_DLSRAVKNV_					0	0	0		nc|ENSG00000100767|O95428-6|PAPLN	nc|ENSG00000100767|O95428-6|PAPLN	nc|ENSG00000100767|O95428-6|PAPLN	MULTI-MSMS	A375_MHC_IP_R2	2	501.6900329589844	2	501.290548	1000.56654	-0.3975	-0.00019926	0.057157	2.8652E-05	-0.34035	-0.00017061	501.2904638081066	114.09	5.6505	114.8	111.98	117.63	0.70984					264	110	4	0	0	0	0.70307	1	42273	42273		6.7232	0.51738	1	35047000			6571	14509	4566	4612	6398	6398					0.06628261191804086
DLSRFCEED	9	Unmodified	_DLSRFCEED_					0	0	0		ENSG00000162722|ENST00000366481|TRIM58	ENSG00000162722|ENST00000366481|TRIM58	ENSG00000162722|ENST00000366481|TRIM58	MULTI-MSMS	A375_MHC_IP_R2	2	557.7076416015625	2	557.229496	1112.44444	-0.96367	-0.00053698	-0.72736	-0.0004053	-1.691	-0.00094229	557.229047936575	97.112	0.35432	97.868	97.62	97.974	0.75586					10	6	2	0	0	0	0.64808	1	36879	36879		11.64	0.81637	1	993380			6572	6581	4567	4613	6399	6399					-0.1072856867272094
DLSRFCEED	9	Unmodified	_DLSRFCEED_					0	0	0		ENSG00000162722|ENST00000366481|TRIM58	ENSG00000162722|ENST00000366481|TRIM58	ENSG00000162722|ENST00000366481|TRIM58	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	557.229496	1112.44444	-0.46914	-0.00026142	0.29004	0.00016162	-0.1791	-9.9801E-05	557.2297272588311	97.709	0.45937	97.709	97.54	97.999	0	-0.079421	0.000285	NaN	11.64	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1265400			6573	6581	4567	4613							-0.1072856867272094
DLSRFCEED	9	Unmodified	_DLSRFCEED_					0	0	0		ENSG00000162722|ENST00000366481|TRIM58	ENSG00000162722|ENST00000366481|TRIM58	ENSG00000162722|ENST00000366481|TRIM58	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	557.229496	1112.44444	-0.96367	-0.00053698	-0.72736	-0.0004053	-1.691	-0.00094229	557.229047936575	97.112	0.35432	97.868	97.62	97.974	0.75586	0.079421	-0.00084884	NaN	11.64	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	993380			6574	6581	4567	4613							-0.1072856867272094
DLSRPPDSY	9	Unmodified	_DLSRPPDSY_					0	0	0		nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3	nc|ENSG00000071564|P15923-2|TCF3	nc|ENSG00000071564|P15923-2|TCF3	MULTI-MSMS	A375_MHC_IP_R1	1	525.6483764648438	2	525.248546	1048.48254	-0.35461	-0.00018626	-0.13357	-7.0156E-05	-0.48818	-0.00025641	525.2484647123266	37.272	0.56122	37.272	37.045	37.607	0					23	10	3	0	0	0	0.61998	1	12521	12521		13.906	3.0821	1	17350000			6575	14480	4568	4614	6400	6400					-0.03976314695751171
DLSRRKSL	8	Unmodified	_DLSRRKSL_					0	0	0		nc|ENSG00000099364|Q6PCT2-2|FBXL19;ENSG00000099364|ENST00000338343|FBXL19;nc|ENSG00000099364|Q6PCT2|FBXL19;nc|ENSG00000099364|Q6PCT2-3|FBXL19	nc|ENSG00000099364|Q6PCT2-2|FBXL19	nc|ENSG00000099364|Q6PCT2-2|FBXL19	MSMS	A375_MHC_IP_R1	1	488.1906433105469	2	487.790715	973.566878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.1	1	112.1	111.6	112.6	0								0	0	0	0.16876	1	41092	41092		8.5933	0	1				6576	2075	4569	4615	6401	6401					0.07903680911670108
DLSTFLQQHPA	11	Unmodified	_DLSTFLQQHPA_					0	0	0		ENSG00000137331|ENST00000259874|IER3	ENSG00000137331|ENST00000259874|IER3	ENSG00000137331|ENST00000259874|IER3	MULTI-SECPEP	A375_MHC_IP_R1	1	628.2194213867188	2	628.817127	1255.6197	-0.90483	-0.00056897	0.91011	0.00057229	0.0052761	3.3177E-06	628.8175159042785	41.292	0.30457	41.292	41.063	41.368	0					9	5	2	0	0	0	0.84606	1	14173	14173		21.537	10.737	1	2168000			6577	4877	4570	4616	6402	6402					0.002115941838155777
DLSVIFMLEQR	11	Unmodified	_DLSVIFMLEQR_					0	0	0		ZNF880|p.S57F|1|0.32|ENSG00000221923|chr19:52374329-52374329|C/T|missense_variant	ZNF880|p.S57F|1|0.32|ENSG00000221923|chr19:52374329-52374329|C/T|missense_variant	ZNF880|p.S57F|1|0.32|ENSG00000221923|chr19:52374329-52374329|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	675.7686157226562	2	675.857938	1349.70132	-0.94087	-0.00063589	0.61038	0.00041253	-0.33049	-0.00022336	675.8584128518117	67.25	0.30787	67.25	67.091	67.399	0					13	5	3	0	0	0	0.60747	1	24334	24334		22.736	9.6938	1	2187400			6578	30253	4571	4617	6403	6403					0.040459535514173695
DLSVIFMLEQR	11	Unmodified	_DLSVIFMLEQR_					0	0	0		ZNF880|p.S57F|1|0.32|ENSG00000221923|chr19:52374329-52374329|C/T|missense_variant	ZNF880|p.S57F|1|0.32|ENSG00000221923|chr19:52374329-52374329|C/T|missense_variant	ZNF880|p.S57F|1|0.32|ENSG00000221923|chr19:52374329-52374329|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	675.7680053710938	2	675.857938	1349.70132	-0.81061	-0.00054785	0.022395	1.5136E-05	-0.78821	-0.00053272	675.8581284219762	66.528	0.45991	67.265	67.035	67.495	0.73631					14	8	2	0	0	0	0.60747	1	25181	25181		22.736	7.4878	1	2698300			6579	30253	4571	4617	6404	6404					0.040459535514173695
DLSYVRIPG	9	Unmodified	_DLSYVRIPG_					0	0	0		nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1;ENSG00000011143|ENST00000393119|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	MSMS	A375_MHC_IP_R1	1	510.1878356933594	2	510.279649	1018.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.168	1	72.168	71.668	72.668	0								0	0	0	0.13673	1	26248	26248		30.637	0.41173	1				6580	992	4572	4618	6405	6405					0.036214564432498264
DLTDNDPVTY	10	Unmodified	_DLTDNDPVTY_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MSMS	A375_MHC_IP_R1	1	576.6881103515625	2	576.756401	1151.49825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.833	1	49.833	49.333	50.333	0								0	0	0	0.14483	1	17633	17633		27.629	4.8925	1				6581	2844	4573	4619	6406	6406					-0.07144072969367699
DLTDNDPVTY	10	Unmodified	_DLTDNDPVTY_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MSMS	A375_MHC_IP_R2	2	576.6878662109375	2	576.756401	1151.49825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.192	1	49.949	49.449	50.449	0.75737								0	0	0	0.14862	1	18481	18481		20.454	3.3407	1				6582	2844	4573	4619	6407	6407					-0.07144072969367699
DLTDYFPC	8	Unmodified	_DLTDYFPC_					0	0	0			REV__ENSG00000284024|ENST00000640019|MSANTD7	REV__ENSG00000284024|ENST00000640019|MSANTD7	MSMS	A375_MHC_IP_R1	1	487.2024841308594	2	487.202218	972.389884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.18	1	128.18	127.68	128.68	0								0	0	0	0.16876	1	49208	49208		9.3474	0	1		+		6583	23000	4574	4620	6408	6408					-0.0974153575349419
DLTEDSMWNFH	11	Unmodified	_DLTEDSMWNFH_					0	0	0		ENSG00000166948|ENST00000202625|TGM6;nc|ENSG00000166948|O95932-2|TGM6	ENSG00000166948|ENST00000202625|TGM6	ENSG00000166948|ENST00000202625|TGM6	MSMS	A375_MHC_IP_R1	1	697.7180786132812	2	697.787709	1393.56087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.358	1	78.358	77.858	78.858	0								0	0	0	0.16249	1	28596	28596		5.7319	0.43497	1				6584	7138	4575	4621	6409	6409					-0.12017250172834792
DLTFVRHPI	9	Unmodified	_DLTFVRHPI_					0	0	0			REV__ENSG00000151503|ENST00000534548|NCAPD3	REV__ENSG00000151503|ENST00000534548|NCAPD3	MSMS	A375_MHC_IP_R1	1	549.36865234375	2	549.308741	1096.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.465	1	78.465	77.965	78.965	0								0	0	0	0.15486	1	28634	28634		16.942	5.8278	1		+		6585	19759	4576	4622	6410	6410					0.058491380885243416
DLTGFPGPLN	10	Unmodified	_DLTGFPGPLN_					0	0	0		A2M|p.D636N|1|0.08|ENSG00000175899|chr12:9095646-9095646|C/T|missense_variant;ENSG00000175899|ENST00000318602|A2M	A2M|p.D636N|1|0.08|ENSG00000175899|chr12:9095646-9095646|C/T|missense_variant	A2M|p.D636N|1|0.08|ENSG00000175899|chr12:9095646-9095646|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	515.68212890625	2	515.763832	1029.51311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.055	1	83.795	83.295	84.295	0.73962								0	0	0	0.14741	1	31563	31563		22.736	0.98964	1				6586	0	4577	4623	6411	6411					-0.0004653631069686526
DLTGRCYCR	9	Unmodified	_DLTGRCYCR_					0	0	0		ENST00000370677.4_1_20:60920618-60942301:-|nuORF;nc|ENSG00000130702|O15230-2|LAMA5;ENSG00000130702|ENST00000252999|LAMA5	ENST00000370677.4_1_20:60920618-60942301:-|nuORF	ENST00000370677.4_1_20:60920618-60942301:-|nuORF	MSMS	A375_MHC_IP_R1	1	543.6426391601562	2	543.744593	1085.47463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.843	1	73.843	73.343	74.343	0								0	0	0	0.15411	1	26894	26894		14.838	1.3304	1				6587	4264	4578	4624	6412	6412					-0.06468488488553703
DLTHLELQPE	10	Unmodified	_DLTHLELQPE_					0	0	0			REV__nc|ENSG00000143768|O00292-2|LEFTY2	REV__nc|ENSG00000143768|O00292-2|LEFTY2	MULTI-SECPEP	A375_MHC_IP_R2	2	399.27117919921875	3	398.871549	1193.59282	-0.31507	-0.00012567	0.29671	0.00011835	-0.01836	-7.3233E-06	398.87156902045075	23.933	0.35767	24.563	24.384	24.742	0.63014					17	6	4	0	0	0	0.65827	1	7796	7796		27.088	6.2172	1	13861000	+		6588	19384	4579	4625	6413	6413					0.0037648557263310067
DLTHLLEAA	9	Unmodified	_DLTHLLEAA_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-MSMS	A375_MHC_IP_R2	2	493.1951904296875	2	491.763832	981.513111	-0.52665	-0.00025899	-0.41728	-0.0002052	-0.94393	-0.00046419	491.7635773633238	77.086	1.3197	77.829	77.252	78.572	0.74293					70	25	4	0	0	0	0.35581	1	29403	29403		26.884	2.2098	1	15723000			6589	8080	4580	4626	6414	6414					0.021614636892763883
DLTHLLSPQM	10	Unmodified	_DLTHLLSPQM_					0	0	0		ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MSMS	A375_MHC_IP_R1	1	385.933837890625	3	385.533991	1153.58014	0.024447	9.4252E-06	-0.98203	-0.00037861	-0.95758	-0.00036918	385.53401026631957	38.404	0.71336	38.404	38.118	38.832	0					42	13	5	0	0	0	0.42311	1	13020	13020		22.775	0	1	7988900			6590	4468	4581	4627	6415	6415					0.00949750908716851
DLTHLLSPQM	10	Unmodified	_DLTHLLSPQM_					0	0	0		ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-SECPEP	A375_MHC_IP_R2	2	385.933837890625	3	385.533991	1153.58014	-0.45228	-0.00017437	-0.032977	-1.2714E-05	-0.48526	-0.00018708	385.53386324829995	37.509	0.71527	38.28	37.917	38.632	0.7709					20	13	2	0	0	0	0.70528	1	13734	13734		22.775	0	1	8722600			6591	4468	4581	4627	6416	6416					0.00949750908716851
DLTHQLKEFF	10	Unmodified	_DLTHQLKEFF_					0	0	0			REV__ENSG00000204977|ENST00000378182|TRIM13	REV__ENSG00000204977|ENST00000378182|TRIM13	MULTI-SECPEP	A375_MHC_IP_R2	2	426.2876281738281	3	426.555672	1276.64519	-0.29938	-0.0001277	0.035163	1.4999E-05	-0.26421	-0.0001127	426.5556236558618	44.955	0.30728	45.724	45.543	45.85	0.7691					8	5	2	0	0	0	0.89761	1	16795	16795		14.957	5.7134	1	1504100	+		6592	22553	4582	4628	6417	6417					0.017930687062062134
DLTIPGHCQE	10	Unmodified	_DLTIPGHCQE_					0	0	0			REV__ENST00000526008.5_1_19:17949989-17958765:-|nuORF	REV__ENST00000526008.5_1_19:17949989-17958765:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	556.1981201171875	2	556.755681	1111.49681	-1.2191	-0.00067873	0.34025	0.00018944	-0.87882	-0.00048929	557.2569885185256	29.776	0.45247	30.474	30.236	30.688	0.69872					14	8	3	0	0	0	0.73104	1	10406	10406		24.991	3.454	1	4200900	+		6593	25767	4583	4629	6418	6418					-0.05447985539126421
DLTKKMIKL	9	Unmodified	_DLTKKMIKL_					0	0	0		tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	545.1722412109375	2	545.338652	1088.66275	-0.72207	-0.00039377	-4.2618	-0.0023241	-4.9839	-0.0027179	545.3370588017925	64.279	0.40788	65.019	64.749	65.157	0.74022					13	7	2	0	0	0	0.71341	1	24314	24314		13.042	6.8367	1	1332000			6594	29408	4584	4630	6419	6419					0.12196692707539114
DLTLKILLYI	10	Unmodified	_DLTLKILLYI_					0	0	0		tr|U7SMB9|U7SMB9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01894PE=4SV=1	tr|U7SMB9|U7SMB9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01894PE=4SV=1	tr|U7SMB9|U7SMB9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01894PE=4SV=1	MSMS	A375_MHC_IP_R2	2	602.8755493164062	2	602.881207	1203.74786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.08	1	114.79	114.29	115.29	0.70985								0	0	0	0.15435	1	43018	43018		6.7232	3.1267	1				6595	29526	4585	4631	6420	6420					0.15413761445029195
DLTQQYKY	8	Unmodified	_DLTQQYKY_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MSMS	A375_MHC_IP_R2	2	529.72705078125	2	529.761289	1057.50803	-0.52371	-0.00027744	-0.078221	-4.1439E-05	-0.60193	-0.00031888	529.7611242539849	42.416	0.76375	43.188	42.86	43.623	0.7724					35	14	4	0	0	0	0.77624	1	15665	15665		8.5933	0	1	19936000	+		6596	18931	4586	4632	6421	6421					-0.018428401733444844
DLTRLPEGPV	10	Unmodified	_DLTRLPEGPV_					0	0	0		nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6;nc|ENSG00000158987|Q8TEU7-6|RAPGEF6;RAPGEF6|p.R1052Efs*2|1|0.16|ENSG00000158987|chr5:131453101-131453101|A/-|frameshift_variant;nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;ENST00000514179.5_1_5:130834202-130867847:-|nuORF	nc|ENSG00000158987|Q8TEU7-5|RAPGEF6	nc|ENSG00000158987|Q8TEU7-5|RAPGEF6	MULTI-SECPEP	A375_MHC_IP_R1	1	549.1787719726562	2	548.803488	1095.59242	-0.41864	-0.00022975	0.47579	0.00026112	0.057148	3.1363E-05	548.8040218434338	43.406	0.56009	43.406	43.043	43.603	0					14	10	2	0	0	0	0.83086	1	15120	15120		10.824	0.75	1	1239300			6597	6342	4587	4633	6422	6422					0.04845110643418593
DLTTWPLLY	9	Unmodified	_DLTTWPLLY_					0	0	0			REV__KCNG1|p.S75L|1|0.33|ENSG00000026559|chr20:51010115-51010115|G/A|missense_variant	REV__KCNG1|p.S75L|1|0.33|ENSG00000026559|chr20:51010115-51010115|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	560.655029296875	2	561.297507	1120.58046	-0.5338	-0.00029962	-3.1553	-0.0017711	-3.6891	-0.0020707	561.2958335115175	64.054	0.50814	64.794	64.496	65.004	0.74022					14	9	2	0	0	0	0.52144	1	24290	24290		16.942	2.104	1	1188200	+		6598	26823	4588	4634	6423	6423					0.024994939002453975
DLTWVLKHC	9	Unmodified	_DLTWVLKHC_					0	0	0		ENSG00000146350|ENST00000398212|TBC1D32;nc|ENSG00000146350|Q96NH3-4|TBC1D32;ENST00000368464.7_1_6:121417353-121436400:-|nuORF;ENST00000464622.5_1_6:121401919-121436400:-|nuORF	ENSG00000146350|ENST00000398212|TBC1D32	ENSG00000146350|ENST00000398212|TBC1D32	MULTI-MSMS	A375_MHC_IP_R1	1	372.59539794921875	3	372.19531	1113.5641	0.29144	0.00010847	0.16426	6.1138E-05	0.4557	0.00016961	372.1952410363058	64.454	0.50867	64.454	64.242	64.75	0					21	9	3	0	0	0	0.76492	1	23333	23333		1.1933	0.12188	1	2824600			6599	5615	4589	4635	6424	6424					0.01186089462498785
DLVCISHW	8	Unmodified	_DLVCISHW_					0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	MSMS	A375_MHC_IP_R1	1	486.6336669921875	2	486.73402	971.453487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.7	1	56.7	56.2	57.2	0								0	0	0	0.16876	1	20317	20317		19.439	0	1		+		6600	21568	4590	4636	6425	6425					-0.03338130525753513
DLVDSKTWGK	10	Unmodified	_DLVDSKTWGK_					0	0	0		ENSG00000130997|ENST00000511885|POLN;nc|ENSG00000130997|Q7Z5Q5-3|POLN;ENST00000515357.5_1_4:2158125-2230958:-|nuORF	ENSG00000130997|ENST00000511885|POLN	ENSG00000130997|ENST00000511885|POLN	MULTI-SECPEP	A375_MHC_IP_R2	2	383.2950744628906	3	383.536389	1147.58734	0.029334	1.1251E-05	0.96219	0.00036904	0.99153	0.00038029	383.5367842124396	43.332	0.35522	44.105	43.876	44.231	0.7724					10	6	2	0	0	0	0.92772	1	16183	16183		2.4348	0	1	1480900			6601	4298	4591	4637	6426	6426					0.01944806780829822
DLVEDRNQRFY	11	Unmodified	_DLVEDRNQRFY_					0	0	0			REV__ENSG00000136888|ENST00000374050|ATP6V1G1	REV__ENSG00000136888|ENST00000374050|ATP6V1G1	MULTI-MSMS	A375_MHC_IP_R2	2	728.7548828125	2	727.854772	1453.69499	-0.70661	-0.00051431	-0.5497	-0.00040011	-1.2563	-0.00091442	727.8543112102726	89.817	0.71594	90.549	90.186	90.902	0.7318					35	13	4	0	0	0	0.73189	1	34132	34132		7.1017	1.3699	1	7171900	+		6602	18971	4592	4638	6427	6427					-0.013708483557593354
DLVELHGLW	9	Unmodified	_DLVELHGLW_					0	0	0			REV__nc|ENSG00000164342|O15455-2|TLR3	REV__nc|ENSG00000164342|O15455-2|TLR3	MULTI-SECPEP	A375_MHC_IP_R2	2	541.13818359375	2	541.287474	1080.5604	-0.89384	-0.00048383	1.0559	0.00057152	0.16201	8.7693E-05	541.2881312143894	81.867	0.40744	82.61	82.482	82.889	0.74293					10	7	2	0	0	0	0.69504	1	31050	31050		12.532	3.1484	1	907660	+		6603	20487	4593	4639	6428	6428					0.023337429602634074
DLVEVTQRL	9	Unmodified	_DLVEVTQRL_					0	0	0			REV__ENSG00000171206|ENST00000643721|TRIM8	REV__ENSG00000171206|ENST00000643721|TRIM8	MULTI-SECPEP	A375_MHC_IP_R1	1	536.6586303710938	2	536.803488	1071.59242	-0.70491	-0.0003784	-0.078884	-4.2345E-05	-0.78379	-0.00042074	537.3050040168763	77.44	0.35278	77.44	77.235	77.588	0					10	6	2	0	0	0	0.76187	1	28301	28301		1.6526	1.1943	1	800360	+		6604	21052	4594	4640	6429	6429					0.05949110643427957
DLVGGHGML	9	Unmodified	_DLVGGHGML_					0	0	0			REV__tr|U7SNJ2|U7SNJ2_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01733PE=3SV=1	REV__tr|U7SNJ2|U7SNJ2_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01733PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	898.9633178710938	1	898.445114	897.437837	-0.44824	-0.00040272	4.0859	0.003671	3.6377	0.0032682	898.4488029126574	121.52	0.56055	121.97	121.77	122.33	0.44488					16	10	2	0	0	0	0.65246	1	46486	46486		21.747	4.8044	1	42519000	+		6605	28331	4595	4641	6430	6430					-0.014984170427851495
DLVHYDYMR	9	Unmodified	_DLVHYDYMR_					0	0	0			REV__ENSG00000197498|ENST00000441448|RPF2	REV__ENSG00000197498|ENST00000441448|RPF2	MSMS	A375_MHC_IP_R1	1	606.5060424804688	2	606.279323	1210.54409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.89	1	97.89	97.39	98.39	0								0	0	0	0.15486	1	35964	35964		7.9102	0	1		+		6606	22292	4596	4642	6431	6431					-0.05275706268139402
DLVIRIRIKIR	11	Unmodified	_DLVIRIRIKIR_					0	0	0		ENST00000377705.5_1_1:6585202-6585712:-|nuORF	ENST00000377705.5_1_1:6585202-6585712:-|nuORF	ENST00000377705.5_1_1:6585202-6585712:-|nuORF	MSMS	A375_MHC_IP_R1	1	698.0016479492188	2	697.969545	1393.92454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.822	1	95.822	95.322	96.322	0								0	0	0	0.16353	1	35219	35219		0.35063	0	1				6607	11300	4597	4643	6432	6432					0.24333235118615448
DLVISPPLSSV	11	Unmodified	_DLVISPPLSSV_					0	0	0			REV__ENSG00000057468|ENST00000263187|MSH4	REV__ENSG00000057468|ENST00000263187|MSH4	MSMS	A375_MHC_IP_R2	2	563.9227905273438	2	563.821347	1125.62814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.046	1	78.789	78.289	79.289	0.74293								0	0	0	0.13869	1	29639	29639		27.629	4.8925	1		+		6608	16426	4598	4644	6433	6433					0.0703514810040815
DLVKSTEFNEH	11	Unmodified	_DLVKSTEFNEH_					0	0	0		ENSG00000163032|ENST00000295156|VSNL1	ENSG00000163032|ENST00000295156|VSNL1	ENSG00000163032|ENST00000295156|VSNL1	MULTI-SECPEP	A375_MHC_IP_R1	1	660.266357421875	2	659.817324	1317.62009	-0.45826	-0.00030237	3.3631	0.002219	2.9048	0.0019167	660.3220033071457	100.89	0.40375	100.89	100.79	101.19	0					11	7	2	0	0	0	0.99018	1	37189	37189		11.495	0.6952	1	978440			6609	6625	4599	4645	6434	6434					-0.026010308869899745
DLVLLLQKDR	10	Unmodified	_DLVLLLQKDR_					0	0	0		ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	MSMS	A375_MHC_IP_R2	2	404.9642028808594	3	404.915201	1211.72377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.961	1	35.724	35.224	36.224	0.76338								0	0	0	0.15475	1	12651	12651		5.4027	0	1				6610	8247	4600	4646	6435	6435					0.12637921011310027
DLVNNKMRI	9	Unmodified	_DLVNNKMRI_					0	0	0		ENSG00000165661|ENST00000358701|QSOX2	ENSG00000165661|ENST00000358701|QSOX2	ENSG00000165661|ENST00000358701|QSOX2	MULTI-SECPEP	A375_MHC_IP_R1	1	367.6171569824219	3	368.206098	1101.59646	0.28751	0.00010586	2.0672	0.00076116	2.3547	0.00086703	368.2070472090853	60.007	0.45835	60.007	59.803	60.261	0					11	8	2	0	0	0	0.78348	1	21524	21524		0.96228	0.26461	1	962010			6611	6976	4601	4647	6436	6436					0.04972876865485887
DLVNTIDYV	9	Unmodified	_DLVNTIDYV_					0	0	0			REV__nc|ENSG00000169016|O75461-2|E2F6	REV__nc|ENSG00000169016|O75461-2|E2F6	MULTI-MSMS	A375_MHC_IP_R2	2	526.668212890625	2	526.268947	1050.52334	-0.68785	-0.00036199	-1.2377	-0.00065135	-1.9255	-0.0010133	526.2684503648032	49.18	0.60645	49.937	49.741	50.348	0.75737					20	11	2	0	0	0	0.27064	1	18518	18518		32.786	1.5173	1	2538100	+		6612	20898	4602	4648	6437	6437					0.00010026623863268469
DLVQFQST	8	Unmodified	_DLVQFQST_					0	0	0			REV__POGK|p.L503F|1|0.22|ENSG00000143157|chr1:166850086-166850086|C/T|missense_variant	REV__POGK|p.L503F|1|0.22|ENSG00000143157|chr1:166850086-166850086|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	468.58477783203125	2	469.234907	936.455261	-0.36673	-0.00017208	-0.016222	-7.6118E-06	-0.38295	-0.00017969	469.2348999857068	58.061	0.40556	58.061	57.822	58.228	0					12	7	2	0	0	0	0.90775	1	20759	20759		20.454	6.9457	1	661690	+		6613	27819	4603	4649	6438	6438					-0.01550798236121409
DLVQRPAL	8	Unmodified	_DLVQRPAL_					0	0	0			REV__ENSG00000144028|ENST00000323853|SNRNP200	REV__ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	A375_MHC_IP_R1	1	456.6690368652344	2	456.269084	910.523616	-0.23293	-0.00010628	0.24373	0.00011121	0.010798	4.9266E-06	456.2691813038782	57.529	0.61137	57.529	57.211	57.822	0					21	11	2	0	0	0	0.71451	1	20634	20634		30.225	4.8255	1	4582400	+		6614	19404	4604	4650	6439	6439					0.06477491134376123
DLVQRPAL	8	Unmodified	_DLVQRPAL_					0	0	0			REV__ENSG00000144028|ENST00000323853|SNRNP200	REV__ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	A375_MHC_IP_R2	2	456.6689147949219	2	456.269084	910.523616	-0.64492	-0.00029426	0.021275	9.707E-06	-0.62364	-0.00028455	456.2691024941771	56.612	0.81594	57.362	57.051	57.867	0.75014					28	15	3	0	0	0	0.51581	1	21379	21379		48.346	8.3885	1	4656500	+		6615	19404	4604	4650	6440	6440					0.06477491134376123
DLVQRPAL	8	Unmodified	_DLVQRPAL_					0	0	0			REV__ENSG00000144028|ENST00000323853|SNRNP200	REV__ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	456.269084	910.523616	-0.23293	-0.00010628	0.24373	0.00011121	0.010798	4.9266E-06	456.2691813038782	57.529	0.61137	57.529	57.211	57.822	0	0.083459	0.00010323	NaN	48.346	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4582400	+		6616	19404	4604	4650							0.06477491134376123
DLVQRPAL	8	Unmodified	_DLVQRPAL_					0	0	0			REV__ENSG00000144028|ENST00000323853|SNRNP200	REV__ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	456.269084	910.523616	-0.64492	-0.00029426	0.021275	9.707E-06	-0.62364	-0.00028455	456.2691024941771	56.612	0.81594	57.362	57.051	57.867	0.75014	-0.083459	-9.9773E-05	NaN	48.346	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4656500	+		6617	19404	4604	4650							0.06477491134376123
DLVQSETLF	9	Unmodified	_DLVQSETLF_					0	0	0			REV__nc|ENSG00000161180|Q8IYX3-1|CCDC116	REV__nc|ENSG00000161180|Q8IYX3-1|CCDC116	MULTI-MSMS	A375_MHC_IP_R1	1	526.667724609375	2	526.268947	1050.52334	-0.31086	-0.0001636	-2.2301	-0.0011736	-2.541	-0.0013372	526.2673149030489	49.819	0.71407	49.819	49.591	50.305	0					18	13	2	0	0	0	0.34064	1	17698	17698		27.629	1.3607	1	2842600	+		6618	20201	4605	4651	6441	6441					0.00010026623863268469
DLVSELMFAG	10	Unmodified	_DLVSELMFAG_					0	0	0			REV__nc|ENSG00000159363|Q9NQ11-3|ATP13A2	REV__nc|ENSG00000159363|Q9NQ11-3|ATP13A2	MULTI-SECPEP	A375_MHC_IP_R2	2	541.0933837890625	2	541.26535	1080.51615	-0.84486	-0.00045729	4.1397	0.0022407	3.2949	0.0017834	541.7674687031507	62.716	0.30121	63.459	63.383	63.685	0.74263					6	5	2	0	0	0	0.52461	1	23778	23778		43.858	9.7559	1	843590	+		6619	20116	4606	4652	6442	6442					-0.02089029248213592
DLVSQTFGY	9	Unmodified	_DLVSQTFGY_					0	0	0		ENST00000601530.1_1_19:49224057-49228265:-|nuORF;ENSG00000105538|ENST00000222145|RASIP1	ENST00000601530.1_1_19:49224057-49228265:-|nuORF	ENST00000601530.1_1_19:49224057-49228265:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	514.9249877929688	2	515.248015	1028.48148	-0.48667	-0.00025076	-0.47445	-0.00024446	-0.96112	-0.00049521	515.2477398378004	55.595	0.40876	55.595	55.381	55.79	0					12	7	2	0	0	0	0.38578	1	19882	19882		34.402	0	1	2299500			6620	13874	4607	4653	6443	6443					-0.03162529064638875
DLVSTVNVV	9	Unmodified	_DLVSTVNVV_					0	0	0		nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000106278|P23471-3|PTPRZ1;PTPRZ1|p.N1301Tfs*23|1|0.25|ENSG00000106278|chr7:122012947-122012947|A/-|frameshift_variant	nc|ENSG00000106278|P23471-2|PTPRZ1	nc|ENSG00000106278|P23471-2|PTPRZ1	MULTI-MSMS	A375_MHC_IP_R2	2	473.6659240722656	2	473.266207	944.517862	-0.54982	-0.00026021	0.85275	0.00040358	0.30293	0.00014337	473.26629487420576	78.074	0.46007	78.817	78.52	78.98	0.74293					13	8	2	0	0	0	0.46038	1	29676	29676		21.747	3.6003	1	1617400			6621	2679	4608	4654	6444	6444					0.04338347832049294
DLWDRVAL	8	Unmodified	_DLWDRVAL_					0	0	0			REV__ENSG00000171206|ENST00000643721|TRIM8	REV__ENSG00000171206|ENST00000643721|TRIM8	MULTI-SECPEP	A375_MHC_IP_R2	2	494.6656494140625	2	494.266542	986.51853	-0.30926	-0.00015286	-0.49916	-0.00024672	-0.80842	-0.00039958	494.26628714925397	44.029	0.60625	44.799	44.48	45.086	0.76909					29	11	3	0	0	0	0.18412	1	16399	16399		70.716	0	1	12221000	+		6622	21052	4609	4655	6445	6445					0.024731872717552505
DLWFGWFKMVF	11	Unmodified	_DLWFGWFKMVF_					0	0	0		ENST00000399489.5_1_13:31038159-31038201:-|nuORF	ENST00000399489.5_1_13:31038159-31038201:-|nuORF	ENST00000399489.5_1_13:31038159-31038201:-|nuORF	MSMS	A375_MHC_IP_R1	1	492.6784362792969	3	492.577531	1474.71076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.995	1	34.995	34.495	35.495	0								0	0	0	0.1629	1	11597	11597		1.4551	0	1				6623	11539	4610	4656	6446	6446					-0.007602333724435084
DLWHKIHLIKK	11	Unmodified	_DLWHKIHLIKK_					0	0	0			REV__nc|ENSG00000197444|Q9ULD0-3|OGDHL	REV__nc|ENSG00000197444|Q9ULD0-3|OGDHL	MSMS	A375_MHC_IP_R2	2	716.334716796875	2	715.935171	1429.85579	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.65	1	121.1	120.6	121.6	0.44488								0	0	0	0.16302	1	46066	46066		2.9952	0	1		+		6624	22289	4611	4657	6447	6447					0.15805570818929482
DLWLTRSL	8	Unmodified	_DLWLTRSL_					0	0	0		ENSG00000179796|ENST00000396641|LRRC3B	ENSG00000179796|ENST00000396641|LRRC3B	ENSG00000179796|ENST00000396641|LRRC3B	MSMS	A375_MHC_IP_R1	1	502.2039794921875	2	502.282192	1002.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.312	1	75.312	74.812	75.812	0								0	0	0	0.16876	1	27438	27438		16.942	0	1				6625	8249	4612	4658	6448	6448					0.0486576030583592
DLWMLPEI	8	Unmodified	_DLWMLPEI_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000467378.1_1_X:47106498-47106892:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-MSMS	A375_MHC_IP_R2	2	509.659423828125	2	508.759704	1015.50485	-0.74535	-0.0003792	-1.3047	-0.00066378	-2.0501	-0.001043	508.75911415912435	77.024	0.86173	77.767	77.354	78.216	0.74294					37	16	3	0	0	0	0.73946	1	29208	29208		23.148	0	1	2727800			6626	2365	4613	4659	6449	6449					-0.0022780655169754027
DLWPRRRRWRS	11	Unmodified	_DLWPRRRRWRS_					0	0	0			REV__ENSG00000204231|ENST00000374680|RXRB	REV__ENSG00000204231|ENST00000374680|RXRB	MSMS	A375_MHC_IP_R1	1	792.0093383789062	2	792.442549	1582.87055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.36	1	108.36	107.86	108.86	0								0	0	0	0.1635	1	39752	39752		0.35063	0.35063	1		+		6627	22499	4614	4660	6450	6450					0.10242455739626166
DLWRPNMF	8	Unmodified	_DLWRPNMF_					0	0	0			REV__ENST00000424795.2_1_9:71403867-71403945:-|nuORF	REV__ENST00000424795.2_1_9:71403867-71403945:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	540.19775390625	2	539.760569	1077.50659	-0.97407	-0.00052576	1.3643	0.00073642	0.39028	0.00021066	539.7616412178247	26.448	0.50664	26.448	26.322	26.828	0					14	9	2	0	0	0	0.76654	1	7851	7851		15.847	0	1	3782700	+		6628	24629	4615	4661	6451	6451					-0.02906752743092511
DLWRVWQWDEK	11	Unmodified	_DLWRVWQWDEK_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MSMS	A375_MHC_IP_R2	2	780.6372680664062	2	780.883333	1559.75211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.949	1	90.681	90.181	91.181	0.7318								0	0	0	0.16337	1	34224	34224		1.1933	0.84271	1				6629	2857	4616	4662	6452	6452					-0.0053738107940262125
DLWRVWQWDEK	11	Unmodified	_DLWRVWQWDEK_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MSMS	A375_MHC_IP_R2	2	780.9165649414062	2	780.883333	1559.75211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.28	1	125.58	125.08	126.08	0.2951								0	0	0	0.16297	1	48785	48785		3.2813	0	1				6630	2857	4616	4662	6453	6453					-0.0053738107940262125
DLWSLYQYHWI	11	Unmodified	_DLWSLYQYHWI_					0	0	0			REV__PTPN6|p.P418L|1|0.17|ENSG00000111679|chr12:6957965-6957965|C/T|missense_variant	REV__PTPN6|p.P418L|1|0.17|ENSG00000111679|chr12:6957965-6957965|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	508.6748046875	3	508.58211	1522.7245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.098	1	51.098	50.598	51.598	0								0	0	0	0.16309	1	18126	18126		2.6312	0	1		+		6631	27859	4617	4663	6454	6454					-0.01595284339623504
DLWVEDMW	8	Unmodified	_DLWVEDMW_					0	0	0			REV__ENST00000366806.6_1_6:168344100-168344637:+|nuORF	REV__ENST00000366806.6_1_6:168344100-168344637:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	365.27679443359375	3	365.160154	1092.45863	0.71083	0.00025957	0.93263	0.00034056	1.6435	0.00060013	365.4944598809306	48.975	0.30349	48.975	48.78	49.084	0					8	5	2	0	0	0	0.972	1	17318	17318		0	0	1	2244200	+		6632	23939	4618	4664	6455	6455					-0.08389871453778142
DLWWWFSN	8	Unmodified	_DLWWWFSN_					0	0	0		ENST00000497011.5_1_3:165548351-165548405:-|nuORF	ENST00000497011.5_1_3:165548351-165548405:-|nuORF	ENST00000497011.5_1_3:165548351-165548405:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	385.9089050292969	3	385.174903	1152.50288	-0.31829	-0.0001226	-0.96904	-0.00037325	-1.2873	-0.00049585	385.1744330760629	97.103	0.55834	97.859	97.519	98.077	0.75587					17	10	2	0	0	0	0.972	1	36889	36889		0	0	1	1970800			6633	12736	4619	4665	6456	6456					-0.06727099245290447
DLWYLMFK	8	Unmodified	_DLWYLMFK_					0	0	0		nc|ENSG00000145476|Q6ZWL3-2|CYP4V2;ENSG00000145476|ENST00000378802|CYP4V2;ENST00000507209.5_1_4:187118658-187122526:+|nuORF	nc|ENSG00000145476|Q6ZWL3-2|CYP4V2	nc|ENSG00000145476|Q6ZWL3-2|CYP4V2	MULTI-SECPEP	A375_MHC_IP_R1	1	373.2783508300781	3	372.524656	1114.55214	0.17825	6.6401E-05	-0.59152	-0.00022036	-0.41327	-0.00015395	372.52424794358166	30.999	0.81135	30.999	30.653	31.465	0					30	15	3	0	0	0	0.972	1	10071	10071		1.1933	0	1	3980200			6634	5562	4620	4666	6457	6457					-0.0005552728071052115
DLYANLVNN	9	Unmodified	_DLYANLVNN_					0	0	0			REV__ENST00000497997.1_1_3:119393998-119394220:-|nuORF	REV__ENST00000497997.1_1_3:119393998-119394220:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1805419921875	2	518.258914	1034.50327	-0.91766	-0.00047559	0.066762	3.46E-05	-0.8509	-0.00044099	518.2586606464248	37.796	0.66814	38.571	38.227	38.895	0.77451					17	12	2	0	0	0	0.49205	1	13880	13880		27.629	7.1752	1	2074400	+		6635	25474	4621	4667	6458	6458					-0.01259724316082611
DLYANLVNN	9	Unmodified	_DLYANLVNN_					0	0	0			REV__ENST00000497997.1_1_3:119393998-119394220:-|nuORF	REV__ENST00000497997.1_1_3:119393998-119394220:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	518.258914	1034.50327	-0.7426	-0.00038486	0.97293	0.00050423	0.23032	0.00011937	518.7609268547442	38.472	0.50993	38.472	38.067	38.577	0	-0.049169	9.4967E-05	NaN	27.629	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1798300	+		6636	25474	4621	4667							-0.01259724316082611
DLYDEFGNY	9	Unmodified	_DLYDEFGNY_					0	0	0		EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant;EFTUD2|p.S944*|1|0.12|ENSG00000108883|chr17:44851362-44851363|CT/-|frameshift_variant;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000589825.5_1_17:42960950-42971889:-|nuORF;ENST00000592408.5_1_17:42964113-42971889:-|nuORF;ENST00000590105.1_1_17:42971565-42971889:-|nuORF	EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	568.6741943359375	2	568.232561	1134.45057	-0.69697	-0.00039604	0.68341	0.00038834	-0.013563	-7.7071E-06	568.2334003060647	54.084	0.4091	54.835	54.609	55.018	0.75105					13	7	3	0	0	0	0.75466	1	20346	20346		7.9102	5.3327	1	1544500			6637	829	4622	4668	6459	6459					-0.11127727169559876
DLYEDFHIV	9	Unmodified	_DLYEDFHIV_					0	0	0		ENSG00000198356|ENST00000357332|GET3	ENSG00000198356|ENST00000357332|GET3	ENSG00000198356|ENST00000357332|GET3	MULTI-MSMS	A375_MHC_IP_R1	1	575.3436889648438	2	575.774396	1149.53424	-0.1825	-0.00010508	1.8095	0.0010418	1.627	0.00093677	575.775903142186	74.35	0.96417	74.35	73.893	74.857	0					35	18	3	0	0	0	0.60101	1	27065	27065		14.838	4.7643	1	2007400			6638	9258	4623	4669	6460	6460					-0.0345457100186195
DLYFKNQLQ	9	Unmodified	_DLYFKNQLQ_					0	0	0			REV__COL6A2|p.E84K|1|0.71|ENSG00000142173|chr21:46112113-46112113|G/A|missense_variant	REV__COL6A2|p.E84K|1|0.71|ENSG00000142173|chr21:46112113-46112113|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	584.6679077148438	2	584.803488	1167.59242	-0.64242	-0.00037569	0.13637	7.9748E-05	-0.50605	-0.00029594	584.8035368436697	55.866	1.4255	56.616	56.237	57.662	0.75015					75	27	4	0	0	0	0.32899	1	21464	21464		28.487	3.4959	1	93495000	+		6639	15832	4624	4670	6461	6461					0.01533110643413238
DLYFSDEFD	9	Unmodified	_DLYFSDEFD_					0	0	0			REV__ENSG00000051341|ENST00000264233|POLQ	REV__ENSG00000051341|ENST00000264233|POLQ	MULTI-MSMS	A375_MHC_IP_R1	1	575.6907348632812	2	575.732394	1149.45024	-0.24772	-0.00014262	0.075115	4.3246E-05	-0.1726	-9.9374E-05	575.731241047823	95.69	0.25056	95.69	95.465	95.716	0					5	4	2	0	0	0	0.6898	1	35104	35104		7.9102	2.1497	1	932930	+		6640	16391	4625	4671	6462	6462					-0.11851146889421216
DLYGMAVK	8	Unmodified	_DLYGMAVK_					0	0	0		nc|ENSG00000215041|Q96JN8-2|NEURL4;ENSG00000215041|ENST00000399464|NEURL4	nc|ENSG00000215041|Q96JN8-2|NEURL4	nc|ENSG00000215041|Q96JN8-2|NEURL4	MSMS	A375_MHC_IP_R2	2	448.65386962890625	2	448.730946	895.447339	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.426	1	71.16	70.66	71.66	0.73421								0	0	0	0.16876	1	26699	26699		5.2307	0	1				6641	9637	4626	4672	6463	6463					-0.004566487572674305
DLYHYITS	8	Unmodified	_DLYHYITS_					0	0	0		nc|ENSG00000231924|P11464-2|PSG1;nc|ENSG00000231924|P11464-4|PSG1;ENSG00000124467|ENST00000306511|PSG8;nc|ENSG00000124467|Q9UQ74-3|PSG8;ENSG00000231924|ENST00000436291|PSG1;nc|ENSG00000231924|P11464-3|PSG1;PSG6|p.Y82F|1|0.25|ENSG00000170848|chr19:42916307-42916307|T/A|missense_variant;ENST00000599245.1_1_19:43528837-43530575:-|nuORF;ENSG00000221826|ENST00000327495|PSG3;ENSG00000170848|ENST00000187910|PSG6;ENST00000595138.1_1_19:43519232-43530599:-|nuORF;ENSG00000204941|ENST00000342951|PSG5;ENSG00000242221|ENST00000406487|PSG2;ENSG00000243130|ENST00000320078|PSG11;ENST00000597009.5_1_19:43236759-43244536:-|nuORF;ENST00000594655.5_1_19:43519232-43530590:-|nuORF;ENST00000600817.5_1_19:43679971-43690557:-|nuORF;ENST00000401992.1_1_19:43687564-43690557:-|nuORF;nc|ENSG00000170848|Q00889|PSG6;ENST00000402456.4_1_19:43414555-43422019:-|nuORF	nc|ENSG00000231924|P11464-2|PSG1;ENST00000402456.4_1_19:43414555-43422019:-|nuORF	ENST00000402456.4_1_19:43414555-43422019:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	505.6501159667969	2	506.242732	1010.47091	-0.3734	-0.00018903	-0.27094	-0.00013716	-0.64434	-0.00032619	506.2421271019135	74.752	0.40602	74.752	74.502	74.908	0					11	7	2	0	0	0	0.972	1	27238	27238		7.9102	5.3327	1	431310			6642	3902;11565	4627	4673	6464	6464					-0.0339051171911251
DLYIDQLKSQ	10	Unmodified	_DLYIDQLKSQ_					0	0	0		ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	MULTI-SECPEP	A375_MHC_IP_R2	2	407.6268005371094	3	408.215316	1221.62412	-0.20489	-8.3639E-05	0.17577	7.1751E-05	-0.02912	-1.1887E-05	408.21546175613673	35.003	0.60677	35.766	35.525	36.132	0.76338					21	11	3	0	0	0	0.74263	1	12642	12642		32.898	9.0967	1	3035200			6643	1112	4628	4674	6465	6465					0.022170586067204567
DLYIKDYLHPY	11	Unmodified	_DLYIKDYLHPY_					0	0	0		ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MSMS	A375_MHC_IP_R1	1	720.36474609375	2	720.36391	1438.71327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.712	1	71.712	71.212	72.212	0								0	0	0	0.16249	1	26068	26068		5.7319	1.5423	1				6644	9248	4629	4675	6466	6466					0.011458935662403746
DLYKDFRDEFK	11	Unmodified	_DLYKDFRDEFK_					0	0	0			REV__ENSG00000077147|ENST00000371142|TM9SF3	REV__ENSG00000077147|ENST00000371142|TM9SF3	MSMS	A375_MHC_IP_R1	1	492.4773254394531	3	492.577025	1474.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.121	1	38.121	37.621	38.621	0								0	0	0	0.16223	1	12901	12901		3.5927	0.96144	1		+		6645	16689	4630	4676	6467	6467					-0.009121959274807523
DLYKYRHQ	8	Unmodified	_DLYKYRHQ_					0	0	0		ENSG00000119900|ENST00000370435|OGFRL1	ENSG00000119900|ENST00000370435|OGFRL1	ENSG00000119900|ENST00000370435|OGFRL1	MSMS	A375_MHC_IP_R1	1	374.92083740234375	3	374.861207	1121.56179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.941	1	22.941	22.441	23.441	0								0	0	0	0.16876	1	6215	6215		12.241	5.6172	1				6646	3631	4631	4677	6468	6468					0.005873770490325114
DLYNDSAYY	9	Unmodified	_DLYNDSAYY_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	MSMS	A375_MHC_IP_R2	2	562.1928100585938	2	562.232561	1122.45057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.001	1	67.738	67.238	68.238	0.73631								0	0	0	0.1535	1	25383	25383		15.847	2.8047	1				6647	1269	4632	4678	6469	6469					-0.10575727169566562
DLYTGSIGY	9	Unmodified	_DLYTGSIGY_					0	0	0		tr|U7SLQ2|U7SLQ2_FUSNUaminodeoxychorismatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02130PE=4SV=1	tr|U7SLQ2|U7SLQ2_FUSNUaminodeoxychorismatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02130PE=4SV=1	tr|U7SLQ2|U7SLQ2_FUSNUaminodeoxychorismatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02130PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	495.1341857910156	2	494.73474	987.454927	-0.4317	-0.00021358	-1.4677	-0.00072613	-1.8994	-0.0009397	494.7338367182828	58.68	1.0171	58.68	58.531	59.548	0					20	19	2	0	0	0	0.13491	2	21104	21104;21126		44.407	6.2558	1	1418500			6648	29506	4633	4679	6470;6471	6470					-0.039302179559967954
DLYTGSIGY	9	Unmodified	_DLYTGSIGY_					0	0	0		tr|U7SLQ2|U7SLQ2_FUSNUaminodeoxychorismatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02130PE=4SV=1	tr|U7SLQ2|U7SLQ2_FUSNUaminodeoxychorismatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02130PE=4SV=1	tr|U7SLQ2|U7SLQ2_FUSNUaminodeoxychorismatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02130PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	494.6945495605469	2	494.73474	987.454927	-0.8887	-0.00043967	-0.70256	-0.00034758	-1.5913	-0.00078725	494.7346371057318	59.223	0.40366	59.97	59.845	60.249	0.74714					9	7	2	0	0	0	0.32899	1	22498	22498		28.487	5.3384	1	617770			6649	29506	4633	4679	6472	6472					-0.039302179559967954
DMARQLRKY	9	Unmodified	_DMARQLRKY_					0	0	0		nc|ENSG00000167767|Q6KB66-2|KRT80;ENSG00000167767|ENST00000394815|KRT80;CON__Q6KB66-1;nc|ENSG00000167767|Q6KB66-3|KRT80;ENST00000466011.1_1_12:52565184-52579482:-|nuORF	nc|ENSG00000167767|Q6KB66-2|KRT80	nc|ENSG00000167767|Q6KB66-2|KRT80	MULTI-SECPEP	A375_MHC_IP_R2	2	393.62744140625	3	394.213364	1179.61826	-0.43625	-0.00017197	3.7759	0.0014885	3.3397	0.0013166	394.21442590488743	19.143	0.58413	19.746	19.452	20.037	0.60308					13	11	2	0	0	0	0.71541	1	5944	5944		11.495	3.0504	1	1273500		+	6650	627	4634	4680	6473	6473					0.0356368161408227
DMDCNCSCD	9	Unmodified	_DMDCNCSCD_					0	0	0			REV__ENSG00000242120|ENST00000567252|MDFIC2	REV__ENSG00000242120|ENST00000567252|MDFIC2	MSMS	A375_MHC_IP_R2	2	503.15948486328125	2	503.12447	1004.23439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.193	1	86.926	86.426	87.426	0.733								0	0	0	0.15486	1	32778	32778		0	0	1		+		6651	22798	4635	4681	6474	6474					-0.2675601393324314
DMDCPCNCDD	10	Unmodified	_DMDCPCNCDD_					0	0	0			REV__ENST00000431629.5_2_7:114654517-114655986:+|nuORF	REV__ENST00000431629.5_2_7:114654517-114655986:+|nuORF	MSMS	A375_MHC_IP_R2	2	565.6263427734375	2	565.64831	1129.28207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.683	1	34.436	33.936	34.936	0.75225								0	0	0	0.15642	1	12087	12087		0	0	1		+		6652	18839	4636	4682	6475	6475					-0.27740359733070363
DMDKVLLKY	9	Unmodified	_DMDKVLLKY_					0	0	0		ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D;nc|ENSG00000068305|Q02078-6|MEF2A;nc|ENSG00000068305|Q02078|MEF2A;ENSG00000068305|ENST00000557942|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A;ENST00000559036.5_1_15:100173318-100185981:+|nuORF;nc|ENSG00000068305|Q02078-3|MEF2A;ENST00000558983.5_1_15:100173318-100211695:+|nuORF;ENSG00000081189|ENST00000504921|MEF2C;nc|ENSG00000081189|Q06413-2|MEF2C;nc|ENSG00000081189|Q06413-3|MEF2C;nc|ENSG00000081189|Q06413-4|MEF2C;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000081189|Q06413-6|MEF2C;nc|ENSG00000081189|Q06413-5|MEF2C	ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000081189|Q06413-6|MEF2C	ENSG00000116604|ENST00000348159|MEF2D	MULTI-SECPEP	A375_MHC_IP_R1	1	563.2046508789062	2	562.804642	1123.59473	-0.32479	-0.00018279	0.25502	0.00014353	-0.069768	-3.9265E-05	562.8048295343086	62.604	0.91993	62.604	61.994	62.914	0					34	17	4	0	0	0	0.22619	1	22610	22610		59.052	35.032	1	4203600			6653	3410;14490	4637	4683	6476	6476					0.03787823056882189
DMDKVLLKY	9	Unmodified	_DMDKVLLKY_					0	0	0		ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D;nc|ENSG00000068305|Q02078-6|MEF2A;nc|ENSG00000068305|Q02078|MEF2A;ENSG00000068305|ENST00000557942|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A;ENST00000559036.5_1_15:100173318-100185981:+|nuORF;nc|ENSG00000068305|Q02078-3|MEF2A;ENST00000558983.5_1_15:100173318-100211695:+|nuORF;ENSG00000081189|ENST00000504921|MEF2C;nc|ENSG00000081189|Q06413-2|MEF2C;nc|ENSG00000081189|Q06413-3|MEF2C;nc|ENSG00000081189|Q06413-4|MEF2C;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000081189|Q06413-6|MEF2C;nc|ENSG00000081189|Q06413-5|MEF2C	ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000081189|Q06413-6|MEF2C	ENSG00000116604|ENST00000348159|MEF2D	MULTI-SECPEP	A375_MHC_IP_R2	2	375.9385986328125	3	375.538854	1123.59473	-0.00096291	-3.6161E-07	-0.44743	-0.00016803	-0.44839	-0.00016839	375.5386704169931	61.889	0.45385	62.632	62.37	62.824	0.74263					13	8	2	0	0	0	0.76187	1	23496	23496		11.495	9.2119	1	1580300			6654	3410;14490	4637	4683	6477	6477					0.03787823056882189
DMDKVLLKY	9	Unmodified	_DMDKVLLKY_					0	0	0		ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D;nc|ENSG00000068305|Q02078-6|MEF2A;nc|ENSG00000068305|Q02078|MEF2A;ENSG00000068305|ENST00000557942|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A;ENST00000559036.5_1_15:100173318-100185981:+|nuORF;nc|ENSG00000068305|Q02078-3|MEF2A;ENST00000558983.5_1_15:100173318-100211695:+|nuORF;ENSG00000081189|ENST00000504921|MEF2C;nc|ENSG00000081189|Q06413-2|MEF2C;nc|ENSG00000081189|Q06413-3|MEF2C;nc|ENSG00000081189|Q06413-4|MEF2C;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000081189|Q06413-6|MEF2C;nc|ENSG00000081189|Q06413-5|MEF2C	ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000081189|Q06413-6|MEF2C	ENSG00000116604|ENST00000348159|MEF2D	MULTI-SECPEP	A375_MHC_IP_R2	2	563.2041625976562	2	562.804642	1123.59473	-0.83286	-0.00046874	0.097452	5.4847E-05	-0.73541	-0.00041389	562.8045740983744	61.854	0.90751	62.597	62.018	62.925	0.74263					38	17	3	0	0	0	0.058501	1	23424	23424		78.06	39.885	1	5140000			6655	3410;14490	4637	4683	6478	6478					0.03787823056882189
DMECMDGA	8	Unmodified	_DMECMDGA_					0	0	0		ENST00000419794.1_1_9:34318953-34319253:+|nuORF	ENST00000419794.1_1_9:34318953-34319253:+|nuORF	ENST00000419794.1_1_9:34318953-34319253:+|nuORF	MSMS	A375_MHC_IP_R2	2	436.12689208984375	2	436.135164	870.255775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.656	1	51.41	50.91	51.91	0.75406								0	0	0	0.16876	1	19051	19051		2.5775	0	1				6656	11719	4638	4684	6479	6479					-0.18454260842213444
DMERPKHV	8	Unmodified	_DMERPKHV_					0	0	0			REV__ENSG00000117133|ENST00000370654|RPF1	REV__ENSG00000117133|ENST00000370654|RPF1	MULTI-MSMS	A375_MHC_IP_R2	2	1011.5719604492188	1	1011.50403	1010.49675	0.19845	0.00020074	1.6435	0.0016624	1.8419	0.0018631	1012.5087751016432	115.75	0.50848	116.44	116.14	116.64	0.68999					13	9	2	0	0	0	0.77643	1	43687	43687		7.9102	0	1	6167200	+		6657	17994	4639	4685	6480	6480					-0.00807940748461533
DMHCQASAG	9	Unmodified	_DMHCQASAG_					0	0	0		ENST00000534988.1_1_11:63996737-63997202:-|nuORF	ENST00000534988.1_1_11:63996737-63997202:-|nuORF	ENST00000534988.1_1_11:63996737-63997202:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	919.3156127929688	1	919.339662	918.332386	-0.1764	-0.00016217	0.14906	0.00013703	-0.027345	-2.514E-05	919.3405115785172	116.6	2.7917	117.26	116.26	119.05	0.65961					86	54	2	0	0	0	0.70307	1	44641	44641		6.7232	1.9672	1	307320000			6658	13220	4640	4686	6481	6481					-0.1300470123071591
DMHCQASAG	9	Unmodified	_DMHCQASAG_					0	0	0		ENST00000534988.1_1_11:63996737-63997202:-|nuORF	ENST00000534988.1_1_11:63996737-63997202:-|nuORF	ENST00000534988.1_1_11:63996737-63997202:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	919.339662	918.332386	0.12853	0.00011816	-0.0052591	-4.8349E-06	0.12327	0.00011333	919.3402851824886	117.25	1.7754	117.25	116.5	118.27	0	-0.0055618	-4.6108E-05	NaN	6.7232	65	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	390980000			6659	13220	4640	4686							-0.1300470123071591
DMIDMLAQV	9	Unmodified	_DMIDMLAQV_					0	0	0			REV__MED24|p.L98M|1|0.22|ENSG00000008838|chr17:40035756-40035756|G/T|missense_variant	REV__MED24|p.L98M|1|0.22|ENSG00000008838|chr17:40035756-40035756|G/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	518.1809692382812	2	518.246103	1034.47765	-0.37864	-0.00019623	-0.25104	-0.0001301	-0.62968	-0.00032633	518.2455094806888	51.504	0.65972	51.504	51.119	51.778	0					16	12	3	0	0	0	0.65246	1	18154	18154		21.747	14.457	1	1452000	+		6660	27005	4641	4687	6482	6482					-0.038206581543818174
DMLGTLQNAL	10	Unmodified	_DMLGTLQNAL_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-SECPEP	A375_MHC_IP_R2	2	537.7044677734375	2	538.276249	1074.53795	-0.76783	-0.0004133	1.3953	0.00075104	0.62743	0.00033773	538.7786244494009	91.412	0.65778	92.147	91.514	92.172	0.7345					13	12	2	0	0	0	0.77204	1	34724	34724		27.629	9.4825	1	1570400	+		6661	19022	4642	4688	6483	6483					0.0036577550035872264
DMLILRPTYTE	11	Unmodified	_DMLILRPTYTE_					0	0	0			REV__ENST00000471209.1_1_1:155580024-155580464:+|nuORF	REV__ENST00000471209.1_1_1:155580024-155580464:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	450.6335754394531	3	451.235722	1350.68534	-0.16535	-7.4611E-05	1.2316	0.00055573	1.0662	0.00048112	451.2366960092191	74.606	0.4565	74.606	74.298	74.754	0					11	8	2	0	0	0	0.99227	1	27188	27188		1.2148	0	1	532380	+		6662	25113	4643	4689	6484	6484					0.024022473145123513
DMLLGWAD	8	Unmodified	_DMLLGWAD_					0	0	0			REV__KCNJ13|p.I47L|1|0.26|ENSG00000115474|chr2:232771224-232771224|T/G|missense_variant	REV__KCNJ13|p.I47L|1|0.26|ENSG00000115474|chr2:232771224-232771224|T/G|missense_variant	MSMS	A375_MHC_IP_R2	2	460.64892578125	2	460.712753	919.410954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.175	1	36.946	36.446	37.446	0.7709								0	0	0	0.16876	1	13164	13164		13.508	0	1		+		6663	26827	4644	4690	6485	6485					-0.051975256539890324
DMTLLNQH	8	Unmodified	_DMTLLNQH_					0	0	0		ENST00000453159.5_1_21:37505075-37505291:-|nuORF	ENST00000453159.5_1_21:37505075-37505291:-|nuORF	ENST00000453159.5_1_21:37505075-37505291:-|nuORF	MSMS	A375_MHC_IP_R2	2	486.1766357421875	2	486.234384	970.454216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.551	1	29.246	28.746	29.746	0.69508								0	0	0	0.16876	1	9871	9871		11.64	0	1				6664	12093	4645	4691	6486	6486					-0.03219335876690366
DMTVAMISV	9	Unmodified	_DMTVAMISV_					0	0	0			REV__ENST00000591276.1_1_19:990686-991256:+|nuORF	REV__ENST00000591276.1_1_19:990686-991256:+|nuORF	MSMS	A375_MHC_IP_R2	2	483.68658447265625	2	483.735371	965.456189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.373	1	67.109	66.609	67.609	0.73631								0	0	0	0.1499	1	25150	25150		21.747	0	1		+		6665	16491	4646	4692	6487	6487					-0.027920431831034875
DNAPVFDRTL	10	Unmodified	_DNAPVFDRTL_					0	0	0		nc|ENSG00000204963|Q9UN72-2|PCDHA7;ENSG00000204963|ENST00000525929|PCDHA7;nc|ENSG00000204961|Q9Y5H5-2|PCDHA9;ENSG00000204961|ENST00000532602|PCDHA9	nc|ENSG00000204963|Q9UN72-2|PCDHA7	nc|ENSG00000204963|Q9UN72-2|PCDHA7	MULTI-SECPEP	A375_MHC_IP_R2	2	573.7013549804688	2	574.290745	1146.56694	-0.22043	-0.00012659	2.9879	0.0017159	2.7675	0.0015894	574.2907926955562	48.525	0.86105	49.283	48.829	49.69	0.75737					20	16	2	0	0	0	0.74754	1	18065	18065		22.736	1.1993	1	618540			6666	9489	4647	4693	6488	6488					-0.0004836387897739769
DNEDEHCSQY	10	Unmodified	_DNEDEHCSQY_					0	0	0			REV__ENSG00000266074|ENST00000675386|BAHCC1	REV__ENSG00000266074|ENST00000675386|BAHCC1	MSMS	A375_MHC_IP_R1	1	620.1535034179688	2	620.214574	1238.4146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.435	1	32.435	31.935	32.935	0								0	0	0	0.1552	1	10480	10480		3.9444	0.94915	1		+		6667	22925	4648	4694	6489	6489					-0.19507552408708762
DNEISHSSY	9	Unmodified	_DNEISHSSY_					0	0	0		nc|ENSG00000132535|P78352-2|DLG4;nc|ENSG00000132535|P78352-3|DLG4;ENSG00000132535|ENST00000399506|DLG4	nc|ENSG00000132535|P78352-2|DLG4	nc|ENSG00000132535|P78352-2|DLG4	MULTI-MSMS	A375_MHC_IP_R1	1	526.619873046875	2	526.219985	1050.42542	-0.37366	-0.00019663	-0.26958	-0.00014186	-0.64324	-0.00033848	526.2197782952916	62.764	0.61492	62.764	62.454	63.069	0					26	11	3	0	0	0	0.58047	1	22651	22651		15.847	1.0089	1	3758300			6668	14605	4649	4695	6490	6490					-0.09777781972138655
DNEISHSSY	9	Unmodified	_DNEISHSSY_					0	0	0		nc|ENSG00000132535|P78352-2|DLG4;nc|ENSG00000132535|P78352-3|DLG4;ENSG00000132535|ENST00000399506|DLG4	nc|ENSG00000132535|P78352-2|DLG4	nc|ENSG00000132535|P78352-2|DLG4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	526.219985	1050.42542	-0.37366	-0.00019663	-0.26958	-0.00014186	-0.64324	-0.00033848	526.2197782952916	62.764	0.61492	62.764	62.454	63.069	0	-0.023091	-2.8777E-05	NaN	15.847	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3758300			6669	14605	4649	4695							-0.09777781972138655
DNEISHSSY	9	Unmodified	_DNEISHSSY_					0	0	0		nc|ENSG00000132535|P78352-2|DLG4;nc|ENSG00000132535|P78352-3|DLG4;ENSG00000132535|ENST00000399506|DLG4	nc|ENSG00000132535|P78352-2|DLG4	nc|ENSG00000132535|P78352-2|DLG4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	526.219985	1050.42542	-0.66801	-0.00035152	-0.069858	-3.6761E-05	-0.73787	-0.00038828	526.2196295837022	62.068	0.70912	62.811	62.471	63.18	0.74263	0.023091	0.00018142	NaN	15.847	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3843500			6670	14605	4649	4695							-0.09777781972138655
DNESSTESF	9	Unmodified	_DNESSTESF_					0	0	0			REV__ENSG00000108239|ENST00000225235|TBC1D12	REV__ENSG00000108239|ENST00000225235|TBC1D12	MSMS	A375_MHC_IP_R2	2	508.140380859375	2	508.196176	1014.3778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.426	1	52.178	51.678	52.678	0.75225								0	0	0	0.15486	1	19351	19351		8.5933	1.8701	1		+		6671	17520	4650	4696	6491	6491					-0.12881480962971636
DNFEVQRY	8	Unmodified	_DNFEVQRY_					0	0	0		ENSG00000185274|ENST00000333538|GALNT17	ENSG00000185274|ENST00000333538|GALNT17	ENSG00000185274|ENST00000333538|GALNT17	MULTI-SECPEP	A375_MHC_IP_R2	2	358.26092529296875	3	357.501568	1069.48287	-0.60996	-0.00021806	0.099706	3.5645E-05	-0.51025	-0.00018242	357.50154613226056	26.323	0.30411	26.983	26.805	27.109	0.65992					9	5	2	0	0	0	0.94479	1	8870	8870		14.838	3.3436	1	1421400			6672	8655	4651	4697	6492	6492					-0.04908894975892508
DNFHLETTIYY	11	Unmodified	_DNFHLETTIYY_					0	0	0			REV__tr|U7ST67|U7ST67_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01308PE=4SV=1	REV__tr|U7ST67|U7ST67_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01308PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	472.1375427246094	3	472.554108	1414.6405	-0.87274	-0.00041242	0.22331	0.00010553	-0.64944	-0.00030689	472.5541609735599	54.134	0.55872	54.885	54.661	55.22	0.75105					24	10	3	0	0	0	0.99676	1	20474	20474		0.40827	0	1	3026600	+		6673	28460	4652	4698	6493	6493					-0.05023860227174737
DNFPRSVPR	9	Unmodified	_DNFPRSVPR_					0	0	0			REV__ENST00000568314.1_1_15:45490921-45491335:-|nuORF	REV__ENST00000568314.1_1_15:45490921-45491335:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	362.5930480957031	3	363.192957	1086.55704	-0.48577	-0.00017643	0.12166	4.4188E-05	-0.3641	-0.00013224	363.1928290051328	26.383	0.5587	27.043	26.703	27.262	0.65992					15	10	2	0	0	0	0.75842	1	8774	8774		8.9762	6.8902	1	1412500	+		6674	26260	4653	4699	6494	6494					0.01722492906287698
DNFPRSVPR	9	Unmodified	_DNFPRSVPR_					0	0	0			REV__ENST00000568314.1_1_15:45490921-45491335:-|nuORF	REV__ENST00000568314.1_1_15:45490921-45491335:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	363.192957	1086.55704	-0.018014	-6.5427E-06	-0.11684	-4.2436E-05	-0.13486	-4.8979E-05	363.19270549005506	27.046	0.60355	27.046	26.677	27.28	0	0.0015388	-9.1225E-05	NaN	8.9762	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1593700	+		6675	26260	4653	4699							0.01722492906287698
DNHKKLVKK	9	Unmodified	_DNHKKLVKK_					0	0	0			REV__ENSG00000167306|ENST00000285039|MYO5B	REV__ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1485595703125	2	555.343115	1108.67168	-0.79051	-0.00043901	-0.82762	-0.00045962	-1.6181	-0.00089862	555.3427953257439	27.818	0.30296	28.497	28.301	28.604	0.67857					7	5	2	0	0	0	0.76827	1	9565	9565		10.824	2.9138	1	957580	+		6676	20747	4654	4700	6495	6495					0.12168802388214317
DNHRYNWYIRW	11	Unmodified	_DNHRYNWYIRW_					0	0	0			REV__tr|U7SWQ5|U7SWQ5_FUSNU4-alpha-glucanotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01136PE=3SV=1	REV__tr|U7SWQ5|U7SWQ5_FUSNU4-alpha-glucanotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01136PE=3SV=1	MSMS	A375_MHC_IP_R1	1	541.6258544921875	3	541.591891	1621.75384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.433	1	83.433	82.933	83.933	0								0	0	0	0.16351	1	30530	30530		0.45452	0.35968	1		+		6677	28606	4655	4701	6496	6496					-0.03216327270797592
DNIASLDLDP	10	Unmodified	_DNIASLDLDP_					0	0	0			REV__nc|ENSG00000131351|Q9BT25-2|HAUS8	REV__nc|ENSG00000131351|Q9BT25-2|HAUS8	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1612548828125	2	536.761486	1071.50842	-0.69875	-0.00037506	0.13765	7.3883E-05	-0.5611	-0.00030118	536.761443941599	31.812	0.61316	31.812	31.514	32.127	0					19	11	2	0	0	0	0.83355	1	10246	10246		12.241	12.241	1	2319900	+		6678	18598	4656	4702	6497	6497					-0.024474652441540456
DNIASLDLDP	10	Unmodified	_DNIASLDLDP_					0	0	0			REV__nc|ENSG00000131351|Q9BT25-2|HAUS8	REV__nc|ENSG00000131351|Q9BT25-2|HAUS8	MULTI-MATCH	A375_MHC_IP_R2	2		2	536.761486	1071.50842	-0.91069	-0.00048882	-0.13072	-7.0164E-05	-1.0414	-0.00055899	536.761295922684	31.148	0.51056	31.866	31.669	32.18	0.71857	0.027011	-0.0001307	NaN	12.241	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2450000	+		6679	18598	4656	4702							-0.024474652441540456
DNISRFLQLL	10	Unmodified	_DNISRFLQLL_					0	0	0			REV__nc|ENSG00000150760|Q14185|DOCK1	REV__nc|ENSG00000150760|Q14185|DOCK1	MULTI-MSMS	A375_MHC_IP_R2	2	407.29913330078125	3	406.89955	1217.67682	-0.0050275	-2.0457E-06	-0.5612	-0.00022835	-0.56622	-0.0002304	406.8994203037424	31.674	1.0691	32.41	31.788	32.857	0.73692					46	20	4	0	0	0	0.38461	1	11181	11181		35.08	11.279	1	15655000	+		6680	19727	4657	4703	6498	6498					0.0766906146020574
DNKDKKNTCV	10	Unmodified	_DNKDKKNTCV_					0	0	0		tr|U7STI4|U7STI4_FUSNUM18familyaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01357PE=3SV=1	tr|U7STI4|U7STI4_FUSNUM18familyaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01357PE=3SV=1	tr|U7STI4|U7STI4_FUSNUM18familyaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01357PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	582.1611938476562	2	582.787512	1163.56047	-0.61363	-0.00035761	-2.4664	-0.0014374	-3.08	-0.001795	582.785753423858	33.175	0.30604	33.927	33.789	34.095	0.75225					11	5	3	0	0	0	0.92832	1	11928	11928		9.3831	6.1018	1	1996300			6681	29695	4658	4704	6499	6499					-0.014766251020319032
DNKIDRALGFD	11	Unmodified	_DNKIDRALGFD_					0	0	0			REV__ENST00000512959.1_1_4:55595508-55599400:+|nuORF	REV__ENST00000512959.1_1_4:55595508-55599400:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	633.22216796875	2	632.320034	1262.62551	-0.97001	-0.00061336	0.45223	0.00028595	-0.51778	-0.0003274	632.3201961414896	67.367	0.56169	67.367	67.143	67.704	0					22	10	3	0	0	0	0.72713	1	24400	24400		14.405	4.3315	1	5767200	+		6682	20028	4659	4705	6500	6500					0.0047069269546682335
DNLLNVPDDI	10	Unmodified	_DNLLNVPDDI_					0	0	0		ENSG00000141096|ENST00000268793|DPEP3	ENSG00000141096|ENST00000268793|DPEP3	ENSG00000141096|ENST00000268793|DPEP3	MULTI-SECPEP	A375_MHC_IP_R1	1	564.6824951171875	2	564.282586	1126.55062	-0.61996	-0.00034983	-0.036702	-2.0711E-05	-0.65666	-0.00037054	564.2827634564652	85.201	0.60917	85.201	84.955	85.565	0					24	11	3	0	0	0	0.8528	1	31222	31222		11.495	0	1	2098600			6683	5215	4660	4706	6501	6501					-0.007594898357638158
DNLNYTDSF	9	Unmodified	_DNLNYTDSF_					0	0	0		ENSG00000226372|ENST00000441525|DCAF8L1	ENSG00000226372|ENST00000441525|DCAF8L1	ENSG00000226372|ENST00000441525|DCAF8L1	MSMS	A375_MHC_IP_R2	2	544.6627197265625	2	544.730186	1087.44582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.841	1	61.586	61.086	62.086	0.74503								0	0	0	0.15486	1	23045	23045		10.824	2.2306	1				6684	9704	4661	4707	6502	6502					-0.0944061131235685
DNLPLPMAKL	10	Unmodified	_DNLPLPMAKL_					0	0	0			REV__ENST00000602321.5_1_16:67683742-67683967:+|nuORF	REV__ENST00000602321.5_1_16:67683742-67683967:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	370.92431640625	3	371.210849	1110.61072	0.069867	2.5936E-05	-1.0813	-0.0004014	-1.0115	-0.00037547	371.54499045927054	23.07	0.40843	23.7	23.368	23.777	0.63014					9	7	2	0	0	0	0.92514	1	7272	7272		2.6312	2.6312	1	732470	+		6685	20133	4662	4708	6503	6503					0.05983529293780521
DNLSRYLDRDI	11	Unmodified	_DNLSRYLDRDI_					0	0	0			REV__nc|ENSG00000096696|P15924-2|DSP	REV__nc|ENSG00000096696|P15924-2|DSP	MSMS	A375_MHC_IP_R2	2	460.6291198730469	3	460.568641	1378.68409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.312	1	60.059	59.559	60.559	0.74714								0	0	0	0.16191	1	22447	22447		8.7518	1.7147	1		+		6686	17008	4663	4709	6504	6504					0.009897492699337818
DNNYGYDGSY	10	Unmodified	_DNNYGYDGSY_					0	0	0			REV__HNRNPR|p.N613D|1|0.12|ENSG00000125944|chr1:23310519-23310519|T/C|missense_variant	REV__HNRNPR|p.N613D|1|0.12|ENSG00000125944|chr1:23310519-23310519|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	584.1542358398438	2	584.2149	1166.41525	-0.32226	-0.00018827	0.39891	0.00023305	0.076649	4.4779E-05	584.2149593035876	40.075	0.4079	40.075	39.896	40.304	0					14	7	2	0	0	0	0.6806	1	13679	13679		14.838	11.242	1	2402200	+		6687	26751	4664	4710	6505	6505					-0.16130389697354985
DNNYGYDGSY	10	Unmodified	_DNNYGYDGSY_					0	0	0			REV__HNRNPR|p.N613D|1|0.12|ENSG00000125944|chr1:23310519-23310519|T/C|missense_variant	REV__HNRNPR|p.N613D|1|0.12|ENSG00000125944|chr1:23310519-23310519|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	584.153076171875	2	584.2149	1166.41525	-0.52195	-0.00030493	0.39343	0.00022985	-0.12852	-7.5082E-05	584.2149878744199	39.419	0.7123	40.194	39.863	40.575	0.77451					16	13	2	0	0	0	0.70329	1	14476	14476		10.824	7.2274	1	2792200	+		6688	26751	4664	4710	6506	6506					-0.16130389697354985
DNNYGYDGSY	10	Unmodified	_DNNYGYDGSY_					0	0	0			REV__HNRNPR|p.N613D|1|0.12|ENSG00000125944|chr1:23310519-23310519|T/C|missense_variant	REV__HNRNPR|p.N613D|1|0.12|ENSG00000125944|chr1:23310519-23310519|T/C|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	584.2149	1166.41525	-0.52195	-0.00030493	0.39343	0.00022985	-0.12852	-7.5082E-05	584.2149878744199	39.419	0.7123	40.194	39.863	40.575	0.77451	0.059354	-2.9513E-06	NaN	14.838	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2792200	+		6689	26751	4664	4710							-0.16130389697354985
DNPSHFEKQY	10	Unmodified	_DNPSHFEKQY_					0	0	0		nc|ENSG00000122484|Q8IXW5-2|RPAP2;ENSG00000122484|ENST00000610020|RPAP2	nc|ENSG00000122484|Q8IXW5-2|RPAP2	nc|ENSG00000122484|Q8IXW5-2|RPAP2	MSMS	A375_MHC_IP_R1	1	632.7235717773438	2	632.783284	1263.55202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.753	1	24.753	24.253	25.253	0								0	0	0	0.15353	1	7101	7101		9.3831	2.66	1				6690	3784	4665	4711	6507	6507					-0.06921855747009431
DNQSQEESAGD	11	Unmodified	_DNQSQEESAGD_					0	0	0			REV__ENSG00000113048|ENST00000261413|MRPS27	REV__ENSG00000113048|ENST00000261413|MRPS27	MULTI-MSMS	A375_MHC_IP_R1	1	590.1583251953125	2	590.223453	1178.43235	-0.28906	-0.00017061	-0.78295	-0.00046212	-1.072	-0.00063273	590.2230197378937	23.068	0.71039	23.068	22.823	23.533	0					25	13	3	0	0	0	0.72649	1	6348	6348		12.241	5.1389	1	3181500	+		6691	17765	4666	4712	6508	6508					-0.14972513882230487
DNSVLRFLKR	10	Unmodified	_DNSVLRFLKR_					0	0	0			REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-MSMS	A375_MHC_IP_R2	2	416.9784851074219	3	416.578811	1246.7146	0.0871	3.6284E-05	0.28042	0.00011682	0.36752	0.0001531	416.57829548974235	134.97	0.65982	135.11	134.85	135.51	0.13901					22	12	4	0	0	0	0.72014	1	53115	53115		1.5923	0.81575	1	3240000	+		6692	17118	4667	4713	6509	6509					0.1011157244563492
DNTDSDISIF	10	Unmodified	_DNTDSDISIF_					0	0	0			REV__tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	REV__tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	MSMS	A375_MHC_IP_R2	2	563.69970703125	2	563.748576	1125.4826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.212	1	53.963	53.463	54.463	0.75105								0	0	0	0.15158	1	20076	20076		14.838	6.9281	1		+		6693	28411	4668	4714	6510	6510					-0.075123594864408
DNTVIKLCTM	10	Unmodified	_DNTVIKLCTM_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	A375_MHC_IP_R2	2	568.7105712890625	2	569.28576	1136.55697	-0.30368	-0.00017288	-0.75524	-0.00042995	-1.0589	-0.00060283	569.2851779887086	73.65	0.81507	74.386	73.99	74.805	0.73541					20	15	2	0	0	0	0.90513	1	27898	27898		17.113	10.39	1	2499200			6694	4099;14587;14586	4669	4715	6511	6511					-0.005850112002462993
DNTYVLFHVEQ	11	Unmodified	_DNTYVLFHVEQ_					0	0	0			REV__ENST00000465304.5_1_3:122313690-122334156:+|nuORF	REV__ENST00000465304.5_1_3:122313690-122334156:+|nuORF	MSMS	A375_MHC_IP_R2	2	455.6083679199219	3	455.55422	1363.64083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.316	1	21.935	21.435	22.435	0.61932								0	0	0	0.16147	1	6701	6701		11.065	1.301	1		+		6695	21203	4670	4716	6512	6512					-0.02644440507356194
DNVADLHEKY	10	Unmodified	_DNVADLHEKY_					0	0	0		ENSG00000100804|ENST00000361611|PSMB5;ENST00000493471.2_1_14:23495300-23497005:-|nuORF;nc|ENSG00000100804|P28074-3|PSMB5	ENSG00000100804|ENST00000361611|PSMB5	ENSG00000100804|ENST00000361611|PSMB5	MULTI-MSMS	A375_MHC_IP_R1	1	602.685546875	2	602.28566	1202.55677	-0.20258	-0.00012201	-0.50986	-0.00030708	-0.71244	-0.00042909	602.2851369573849	44.216	0.56392	44.216	43.959	44.523	0					25	10	3	0	0	0	0.70334	1	15413	15413		10.8	1.4164	1	3790800			6696	2221	4671	4717	6513	6513					-0.03640971604227161
DNYNGFDNYSG	11	Unmodified	_DNYNGFDNYSG_					0	0	0			REV__HNRNPA1L2|p.N268D|1|0.47|ENSG00000139675|chr13:52643294-52643294|A/G|missense_variant	REV__HNRNPA1L2|p.N268D|1|0.47|ENSG00000139675|chr13:52643294-52643294|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	633.6383056640625	2	633.238906	1264.46326	-1.0084	-0.00063857	-0.34107	-0.00021598	-1.3495	-0.00085455	633.2386487304991	72.057	1.1641	72.791	72.264	73.428	0.73421					50	22	3	0	0	0	0.73694	1	27549	27549		2.2828	0.80087	1	3506700	+		6697	26750	4672	4718	6514	6514					-0.15839315777316187
DPAALTLILH	10	Unmodified	_DPAALTLILH_					0	0	0			REV__ENST00000324333.14_1_9:3827742-3827916:-|nuORF	REV__ENST00000324333.14_1_9:3827742-3827916:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	355.5820007324219	3	355.209725	1062.60735	0.075681	2.6883E-05	-0.11189	-3.9743E-05	-0.036204	-1.286E-05	355.20964876332084	43.513	0.45766	43.513	43.197	43.655	0					18	8	3	0	0	0	0.93799	1	15188	15188		1.7423	0	1	3135200	+		6698	23588	4673	4719	6515	6515					0.0785460251142922
DPACTLCASA	10	Unmodified	_DPACTLCASA_					0	0	0			REV__nc|ENSG00000162670|Q76B58-2|BRINP3	REV__nc|ENSG00000162670|Q76B58-2|BRINP3	MSMS	A375_MHC_IP_R1	1	476.161865234375	2	476.199153	950.383753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.403	1	43.403	42.903	43.903	0								0	0	0	0.15451	1	15084	15084		6.2058	0.44535	1		+		6699	20289	4674	4720	6516	6516					-0.09342377256677992
DPALAQLKNY	10	Unmodified	_DPALAQLKNY_					0	0	0			REV__ENSG00000162951|ENST00000295057|LRRTM1	REV__ENSG00000162951|ENST00000295057|LRRTM1	MULTI-MSMS	A375_MHC_IP_R2	2	378.6047668457031	3	378.204751	1131.59242	-0.34078	-0.00012888	0.4528	0.00017125	0.11202	4.2368E-05	378.20489063735965	29.689	1.1121	30.388	30.134	31.246	0.69872					59	21	4	0	0	0	0.66857	1	10354	10354		15.739	0.78146	1	56003000	+		6700	20325	4675	4721	6517	6517					0.03189110643438653
DPAPPSHTLW	10	Unmodified	_DPAPPSHTLW_					0	0	0		ENST00000495645.5_1_7:150932340-150932418:+|nuORF	ENST00000495645.5_1_7:150932340-150932418:+|nuORF	ENST00000495645.5_1_7:150932340-150932418:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	560.6511840820312	2	560.774731	1119.53491	-0.51745	-0.00029018	0.28419	0.00015937	-0.23327	-0.00013081	560.7745009542011	46.318	0.40648	47.083	46.855	47.262	0.76519					9	7	2	0	0	0	0.88918	1	17305	17305		13.042	0	1	764580			6701	12711	4676	4722	6518	6518					-0.0200773156213927
DPAQELQSVM	10	Unmodified	_DPAQELQSVM_					0	0	0		nc|ENSG00000146151|Q8TB92-4|HMGCLL1	nc|ENSG00000146151|Q8TB92-4|HMGCLL1	nc|ENSG00000146151|Q8TB92-4|HMGCLL1	MULTI-SECPEP	A375_MHC_IP_R2	2	558.6900024414062	2	559.263339	1116.51212	-0.72218	-0.00040389	-1.572	-0.00087919	-2.2942	-0.0012831	559.2628308656899	31.077	0.35566	31.796	31.567	31.923	0.71857					9	6	2	0	0	0	0.79457	1	10980	10980		15.248	5.8654	1	1211100			6702	14665	4677	4723	6519	6519					-0.041471187419119815
DPARDLNALY	10	Unmodified	_DPARDLNALY_					0	0	0			REV__ENSG00000179832|ENST00000326134|MROH1	REV__ENSG00000179832|ENST00000326134|MROH1	MULTI-SECPEP	A375_MHC_IP_R1	1	383.59625244140625	3	383.196256	1146.56694	0.23681	9.0746E-05	0.093355	3.5773E-05	0.33017	0.00012652	383.1961951797453	31.185	0.70952	31.185	31.009	31.718	0					29	13	3	0	0	0	0.83355	1	9979	9979		14.957	0	1	5206200	+		6703	21580	4678	4724	6520	6520					-0.0004836387897739769
DPCASRDDW	9	Unmodified	_DPCASRDDW_					0	0	0		ENST00000585362.6_3_19:1104424-1105401:+|nuORF	ENST00000585362.6_3_19:1104424-1105401:+|nuORF	ENST00000585362.6_3_19:1104424-1105401:+|nuORF	MSMS	A375_MHC_IP_R2	2	532.6741333007812	2	532.708731	1063.40291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.892	1	46.657	46.157	47.157	0.76519								0	0	0	0.15486	1	17170	17170		7.2892	1.5288	1				6704	13715	4679	4725	6521	6521					-0.12625704641413904
DPCCAPTH	8	Unmodified	_DPCCAPTH_					0	0	0			REV__ENST00000356661.6_1_X:152482999-152483185:-|nuORF	REV__ENST00000356661.6_1_X:152482999-152483185:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	843.3228149414062	1	843.312385	842.305109	-0.80399	-0.00067802	2.8226	0.0023804	2.0186	0.0017023	843.3160467879699	124.12	0.24872	124.12	123.99	124.24	0					5	4	2	0	0	0	0.77603	1	46569	46569		9.3474	3.587	1	28258000	+		6705	23837	4680	4726	6522	6522					-0.12235184771100194
DPCPNPFLSVS	11	Unmodified	_DPCPNPFLSVS_					0	0	0			REV__ENST00000506632.2_1_4:95506814-95506883:+|nuORF	REV__ENST00000506632.2_1_4:95506814-95506883:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	392.91851806640625	3	392.51823	1174.53286	0.4465	0.00017526	0.81193	0.0003187	1.2584	0.00049395	392.5182169981071	22.698	0.80791	22.698	22.368	23.176	0					32	15	3	0	0	0	0.9574	1	6110	6110		5.5233	2.451	1	13833000	+		6706	25559	4681	4727	6523	6523					-0.04742528362271514
DPCTLQFLAAP	11	Unmodified	_DPCTLQFLAAP_					0	0	0		nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5;nc|ENSG00000012779|P09917-5|ALOX5;nc|ENSG00000012779|P09917-4|ALOX5	nc|ENSG00000012779|P09917-2|ALOX5	nc|ENSG00000012779|P09917-2|ALOX5	MULTI-SECPEP	A375_MHC_IP_R1	1	392.91851806640625	3	392.530358	1174.56925	0.48126	0.00018891	-0.45923	-0.00018026	0.022035	8.6494E-06	392.86451053627053	22.674	0.50509	22.674	22.469	22.974	0					14	9	2	0	0	0	0.9754	1	6110	6110		2.2527	0	1	1908400			6707	1012	4682	4728	6524	6524					-0.011056514655820138
DPDEGDEALKY	11	Unmodified	_DPDEGDEALKY_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-SECPEP	A375_MHC_IP_R1	1	418.25091552734375	3	417.850702	1250.53028	0.2837	0.00011854	0.24795	0.00010361	0.53165	0.00022215	417.850734131655	20.385	0.35563	20.385	20.18	20.536	0					15	6	3	0	0	0	0.9754	1	5223	5223		4.1166	0.52957	1	2945300			6708	3825	4683	4729	6525	6525					-0.08496705286211181
DPDKEHYCHY	10	Unmodified	_DPDKEHYCHY_					0	0	0			REV__ENSG00000162377|ENST00000371538|COA7	REV__ENSG00000162377|ENST00000371538|COA7	MULTI-SECPEP	A375_MHC_IP_R1	1	436.93145751953125	3	436.176755	1305.50844	-0.1981	-8.6408E-05	0.61538	0.00026842	0.41728	0.00018201	436.1769271988912	33.343	0.50774	33.343	33.04	33.547	0					16	9	2	0	0	0	0.94891	1	10900	10900		1.9064	0.31409	1	2425700	+		6709	20244	4684	4730	6526	6526					-0.13209788515769105
DPDNDCAW	8	Unmodified	_DPDNDCAW_					0	0	0			REV__nc|ENSG00000130164|P01130-6|LDLR	REV__nc|ENSG00000130164|P01130-6|LDLR	MSMS	A375_MHC_IP_R2	2	468.1318664550781	2	468.163625	934.312696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.775	1	56.525	56.025	57.025	0.75015								0	0	0	0.16876	1	21073	21073		2.8892	0	1		+		6710	18520	4685	4731	6527	6527					-0.15708753969840927
DPDPVYEPED	10	Unmodified	_DPDPVYEPED_					0	0	0			REV__nc|ENSG00000127022|P27824-3|CANX	REV__nc|ENSG00000127022|P27824-3|CANX	MSMS	A375_MHC_IP_R2	2	588.171875	2	588.240583	1174.46661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.375	1	24.005	23.505	24.505	0.63014								0	0	0	0.14862	1	7508	7508		20.454	2.3073	1		+		6711	18409	4686	4732	6528	6528					-0.11364065723319072
DPDQPLPFPSQ	11	Unmodified	_DPDQPLPFPSQ_					0	0	0			REV__ENST00000593460.1_1_19:18120971-18123772:+|nuORF	REV__ENST00000593460.1_1_19:18120971-18123772:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	621.194580078125	2	620.79586	1239.57717	-0.46295	-0.0002874	0.017572	1.0908E-05	-0.44538	-0.00027649	620.7957697443637	59.155	1.322	59.155	58.075	59.397	0					38	25	3	0	0	0	0.64288	1	21127	21127		31.268	14.155	1	4960800	+		6712	17398	4687	4733	6529	6529					-0.03303800944399882
DPDQPLPFPSQ	11	Unmodified	_DPDQPLPFPSQ_					0	0	0			REV__ENST00000593460.1_1_19:18120971-18123772:+|nuORF	REV__ENST00000593460.1_1_19:18120971-18123772:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	620.69091796875	2	620.79586	1239.57717	-0.99986	-0.00062071	-0.89622	-0.00055637	-1.8961	-0.0011771	620.795160964513	57.906	0.80919	58.655	58.12	58.929	0.74894					25	15	2	0	0	0	0.71172	1	21951	21951		38.176	11.907	1	3395800	+		6713	17398	4687	4733	6530	6530					-0.03303800944399882
DPDQTLGLLVY	11	Unmodified	_DPDQTLGLLVY_					0	0	0			REV__OR4A16|p.F10Y|1|0.2|ENSG00000181961|chr11:55343229-55343229|T/A|missense_variant	REV__OR4A16|p.F10Y|1|0.2|ENSG00000181961|chr11:55343229-55343229|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	617.7216186523438	2	617.321711	1232.62887	-0.12138	-7.4934E-05	-0.17775	-0.00010973	-0.29913	-0.00018466	617.3214572013579	109.27	0.86432	109.27	108.81	109.68	0					38	16	4	0	0	0	0.57844	1	40042	40042		24.991	4.5764	1	5483400	+		6714	27667	4688	4734	6531	6531					0.021859427494746342
DPDQTLGLLVY	11	Unmodified	_DPDQTLGLLVY_					0	0	0			REV__OR4A16|p.F10Y|1|0.2|ENSG00000181961|chr11:55343229-55343229|T/A|missense_variant	REV__OR4A16|p.F10Y|1|0.2|ENSG00000181961|chr11:55343229-55343229|T/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	617.321711	1232.62887	-0.12138	-7.4934E-05	-0.17775	-0.00010973	-0.29913	-0.00018466	617.3214572013579	109.27	0.86432	109.27	108.81	109.68	0	-0.020591	-0.00020824	NaN	24.991	38	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5483400	+		6715	27667	4688	4734							0.021859427494746342
DPDQTLGLLVY	11	Unmodified	_DPDQTLGLLVY_					0	0	0			REV__OR4A16|p.F10Y|1|0.2|ENSG00000181961|chr11:55343229-55343229|T/A|missense_variant	REV__OR4A16|p.F10Y|1|0.2|ENSG00000181961|chr11:55343229-55343229|T/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	617.321711	1232.62887	-0.62433	-0.00038541	0.13707	8.4615E-05	-0.48726	-0.00030079	617.3216665926291	108.57	0.66248	109.31	109.01	109.67	0.74683	0.020591	0.00018044	NaN	24.991	32	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6947600	+		6716	27667	4688	4734							0.021859427494746342
DPDVPMDELIG	11	Unmodified	_DPDVPMDELIG_					0	0	0			REV__nc|ENSG00000145335|P37840-3|SNCA	REV__nc|ENSG00000145335|P37840-3|SNCA	MULTI-SECPEP	A375_MHC_IP_R2	2	400.9992370605469	3	400.853278	1199.538	-0.36075	-0.00014461	-0.32887	-0.00013183	-0.68962	-0.00027644	400.85304835269955	20.677	1.0128	21.287	20.907	21.919	0.61029					34	19	2	0	0	0	0.99018	1	6645	6645		3.8459	0.52627	1	3096900	+		6717	15754	4689	4735	6532	6532					-0.05378269290304161
DPEATQFIEY	10	Unmodified	_DPEATQFIEY_					0	0	0		nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A	nc|ENSG00000183873|Q14524-5|SCN5A	nc|ENSG00000183873|Q14524-5|SCN5A	MULTI-SECPEP	A375_MHC_IP_R2	2	607.1744995117188	2	606.774593	1211.53463	-0.32158	-0.00019513	-0.10373	-6.2941E-05	-0.42531	-0.00025807	606.774737467616	89.175	0.65244	89.907	89.584	90.236	0.7318					22	12	2	0	0	0	0.92227	1	33983	33983		13.042	2.2185	1	2121700			6718	8539	4690	4736	6533	6533					-0.06267196072667502
DPEDEDTDE	9	Unmodified	_DPEDEDTDE_					0	0	0			REV__ENSG00000254585|ENST00000650528|MAGEL2	REV__ENSG00000254585|ENST00000650528|MAGEL2	MULTI-SECPEP	A375_MHC_IP_R2	2	1064.986572265625	1	1064.35383	1063.34656	0.016382	1.7436E-05	2.6967	0.0028702	2.7131	0.0028877	1064.3579509984559	128.95	0.75955	129.19	129.01	129.77	0.23946					17	14	2	0	0	0	0.71541	1	50686	50686		7.2892	2.96	1	22191000	+		6719	22864	4691	4737	6534	6534					-0.1825809878775999
DPEIAILLFI	10	Unmodified	_DPEIAILLFI_					0	0	0			REV__tr|U7STI0|U7STI0_FUSNUPeptidoglycanglycosyltransferaseRodAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rodAPE=3SV=1	REV__tr|U7STI0|U7STI0_FUSNUPeptidoglycanglycosyltransferaseRodAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rodAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	381.6400146484375	3	381.893514	1142.65871	0.14425	5.5086E-05	2.378	0.00090814	2.5222	0.00096322	382.22859529737514	19.293	0.23279	19.293	19.238	19.471	0					10	4	3	0	0	0	0.92957	1	4763	4763		1.5923	0.81575	1	17041000	+		6720	28487	4692	4738	6535	6535					0.09308926485459779
DPEIEAHECAF	11	Unmodified	_DPEIEAHECAF_					0	0	0			REV__tr|U7STB6|U7STB6_FUSNUAdenosylmethionine-8-amino-7-oxononanoateaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioAPE=3SV=1	REV__tr|U7STB6|U7STB6_FUSNUAdenosylmethionine-8-amino-7-oxononanoateaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	630.16259765625	2	630.763703	1259.51285	-1.0688	-0.00067413	1.405	0.00088622	0.33625	0.00021209	630.764733930031	23.829	0.408	24.459	24.232	24.64	0.63014					12	7	2	0	0	0	0.99227	1	7730	7730		1.1933	0	1	4369800	+		6721	28472	4693	4739	6536	6536					-0.1065232409289365
DPEINKVGNW	10	Unmodified	_DPEINKVGNW_					0	0	0		CON__P09870	CON__P09870	CON__P09870	MULTI-SECPEP	A375_MHC_IP_R2	2	391.936279296875	3	391.196256	1170.56694	-0.64463	-0.00025218	1.0597	0.00041455	0.41507	0.00016238	391.19664350117836	33.618	1.0654	34.37	33.737	34.803	0.75225					29	20	2	0	0	0	0.8528	1	12226	12226		10.315	3.6554	1	4789300		+	6722	595	4694	4740	6537	6537					-0.011523638790094992
DPEKKAFIRQ	10	Unmodified	_DPEKKAFIRQ_					0	0	0		ENSG00000116903|ENST00000366645|EXOC8	ENSG00000116903|ENST00000366645|EXOC8	ENSG00000116903|ENST00000366645|EXOC8	MSMS	A375_MHC_IP_R1	1	616.6278076171875	2	616.343312	1230.67207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.51	1	137.51	137.01	138.01	0								0	0	0	0.15451	1	52927	52927		6.2058	3.2105	1				6723	3442	4695	4741	6538	6538					0.0659617731741946
DPEKWEIKQM	10	Unmodified	_DPEKWEIKQM_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF;DHX8|p.S395F|1|0.25|ENSG00000067596|chr17:43493858-43493858|C/T|missense_variant	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-MSMS	A375_MHC_IP_R1	1	435.6161804199219	3	435.216551	1302.62782	-0.20235	-8.8067E-05	-0.79797	-0.00034729	-1.0003	-0.00043536	435.21620026711173	42.057	0.60929	42.057	41.777	42.386	0					19	11	2	0	0	0	0.70442	2	14536	14536;14567		10.315	2.1448	1	20212000			6724	1441	4696	4742	6539;6540	6539					-0.011385948910856314
DPELTGEKF	9	Unmodified	_DPELTGEKF_					0	0	0		nc|ENSG00000142675|Q969H4|CNKSR1;ENSG00000142675|ENST00000361530|CNKSR1	nc|ENSG00000142675|Q969H4|CNKSR1	nc|ENSG00000142675|Q969H4|CNKSR1	MULTI-SECPEP	A375_MHC_IP_R1	1	517.6648559570312	2	518.253297	1034.49204	-0.80473	-0.00041705	1.353	0.00070118	0.54825	0.00028413	518.75582445537	25.984	0.45551	25.984	25.816	26.271	0					11	8	2	0	0	0	0.60917	1	7657	7657		19.257	0	1	4355200			6725	5325	4697	4743	6541	6541					-0.023825464102401384
DPEQWTSRAV	10	Unmodified	_DPEQWTSRAV_					0	0	0		nc|ENSG00000116761|P32929-2|CTH;nc|ENSG00000116761|P32929-3|CTH;ENSG00000116761|ENST00000370938|CTH	nc|ENSG00000116761|P32929-2|CTH	nc|ENSG00000116761|P32929-2|CTH	MULTI-SECPEP	A375_MHC_IP_R1	1	397.2598571777344	3	396.859643	1187.5571	-0.4135	-0.0001641	0.67165	0.00026655	0.25815	0.00010245	396.8600144395212	30.478	1.0613	30.478	30.15	31.211	0					46	20	3	0	0	0	0.83355	1	9672	9672		14.957	5.7134	1	5524900			6726	3430	4698	4744	6542	6542					-0.029175518844112958
DPEQWTSRAV	10	Unmodified	_DPEQWTSRAV_					0	0	0		nc|ENSG00000116761|P32929-2|CTH;nc|ENSG00000116761|P32929-3|CTH;ENSG00000116761|ENST00000370938|CTH	nc|ENSG00000116761|P32929-2|CTH	nc|ENSG00000116761|P32929-2|CTH	MULTI-SECPEP	A375_MHC_IP_R2	2	397.2597961425781	3	396.859643	1187.5571	-0.57505	-0.00022821	0.76356	0.00030303	0.18851	7.4813E-05	396.85998423285304	29.824	0.96143	30.522	30.083	31.044	0.69872					44	18	3	0	0	0	0.79457	1	10369	10369		17.863	2.906	1	8057300			6727	3430	4698	4744	6543	6543					-0.029175518844112958
DPFHRSAARL	10	Unmodified	_DPFHRSAARL_					0	0	0			REV__ENST00000477757.5_1_10:97028587-97050742:-|nuORF	REV__ENST00000477757.5_1_10:97028587-97050742:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	389.9206848144531	3	390.54399	1168.61014	-0.59305	-0.00023161	-0.22267	-8.6964E-05	-0.81572	-0.00031858	390.5439733664903	24.98	0.4085	25.624	25.465	25.873	0.64368					10	7	2	0	0	0	0.88918	1	8364	8364		5.0475	1.4605	1	2774300	+		6728	25201	4699	4745	6544	6544					0.03257870688935327
DPFYGPWYRIW	11	Unmodified	_DPFYGPWYRIW_					0	0	0		ENSG00000157600|ENST00000372068|TMEM164;nc|ENSG00000157600|Q5U3C3-2|TMEM164	ENSG00000157600|ENST00000372068|TMEM164	ENSG00000157600|ENST00000372068|TMEM164	MULTI-MSMS	A375_MHC_IP_R2	2	750.7584228515625	2	750.358962	1498.70337	-0.68115	-0.00051111	0.42473	0.0003187	-0.25642	-0.00019241	750.358979242851	141.46	0.1541	141.5	141.43	141.58	0.04216					4	2	2	0	0	0	0.73897	1	55356	55356		0.35063	0	1	853850			6729	6254	4700	4746	6545	6545					-0.026032496484958756
DPFYGPWYRIW	11	Unmodified	_DPFYGPWYRIW_					0	0	0		ENSG00000157600|ENST00000372068|TMEM164;nc|ENSG00000157600|Q5U3C3-2|TMEM164	ENSG00000157600|ENST00000372068|TMEM164	ENSG00000157600|ENST00000372068|TMEM164	MULTI-MATCH	A375_MHC_IP_R1	1		2	750.358962	1498.70337	-0.87012	-0.0006529	1.1475	0.00086104	0.27738	0.00020814	750.3594997002992	141.38	0.25633	141.38	141.27	141.52	0	-0.064251	0.00042113	NaN	0.35063	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	499480			6730	6254	4700	4746							-0.026032496484958756
DPFYGPWYRIW	11	Unmodified	_DPFYGPWYRIW_					0	0	0		ENSG00000157600|ENST00000372068|TMEM164;nc|ENSG00000157600|Q5U3C3-2|TMEM164	ENSG00000157600|ENST00000372068|TMEM164	ENSG00000157600|ENST00000372068|TMEM164	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	750.358962	1498.70337	-0.68115	-0.00051111	0.42473	0.0003187	-0.25642	-0.00019241	750.358979242851	141.46	0.1541	141.5	141.43	141.58	0.04216	0.064251	-0.00066355	NaN	0.35063	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	853850			6731	6254	4700	4746							-0.026032496484958756
DPGDGIIY	8	Unmodified	_DPGDGIIY_					0	0	0			REV__tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1	REV__tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	425.6037902832031	2	425.203076	848.391599	-0.064341	-2.7358E-05	1.0751	0.00045715	1.0108	0.00042979	425.20342131717473	93.223	0.5099	93.962	93.746	94.256	0.73902					13	9	2	0	0	0	0.77797	1	35441	35441		2.3027	0	1	1541200	+		6732	28452	4701	4747	6546	6546					-0.038661586732359865
DPGDGIIY	8	Unmodified	_DPGDGIIY_					0	0	0			REV__tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1	REV__tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	425.203076	848.391599	-0.11392	-4.844E-05	0.66099	0.00028105	0.54707	0.00023261	425.20330733919127	93.876	0.50498	93.876	93.635	94.14	0	-0.043137	-0.00017073	NaN	2.3027	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1650400	+		6733	28452	4701	4747							-0.038661586732359865
DPGHQRRDY	9	Unmodified	_DPGHQRRDY_					0	0	0		ENST00000297979.9_1_9:97849004-97849358:+|nuORF	ENST00000297979.9_1_9:97849004-97849358:+|nuORF	ENST00000297979.9_1_9:97849004-97849358:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	381.6400146484375	3	381.847849	1142.52172	0.17735	6.7722E-05	-0.82471	-0.00031491	-0.64736	-0.00024719	381.84857603355084	19.414	0.30355	19.414	19.268	19.571	0					13	5	3	0	0	0	0.77834	1	4763	4763		1.0715	0	1	3748700			6734	10520	4702	4748	6547	6547					-0.04384169621516776
DPGLVWGVKW	10	Unmodified	_DPGLVWGVKW_					0	0	0			REV__ENST00000462722.5_1_9:131595865-131599118:-|nuORF	REV__ENST00000462722.5_1_9:131595865-131599118:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	385.5853576660156	3	386.209836	1155.60768	-0.036234	-1.3994E-05	3.2865	0.0012693	3.2503	0.0012553	386.2110817085217	23.61	0.66121	23.61	23.33	23.991	0					16	12	2	0	0	0	0.93194	1	6586	6586		3.0723	0	1	5147300	+		6735	21040	4703	4749	6548	6548					0.03610022231259791
DPGTYGQISY	10	Unmodified	_DPGTYGQISY_					0	0	0		ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3	ENSG00000165323|ENST00000525166|FAT3	ENSG00000165323|ENST00000525166|FAT3	MULTI-MSMS	A375_MHC_IP_R2	2	550.2132568359375	2	550.748379	1099.4822	-1.292	-0.00071159	0.10007	5.5114E-05	-1.192	-0.00065648	550.7484540846416	52.825	0.45548	53.576	53.335	53.79	0.75105					14	8	2	0	0	0	0.57505	1	19891	19891		22.736	5.794	1	3020100			6736	6942	4704	4750	6549	6549					-0.06355734415592451
DPHGIEEFY	9	Unmodified	_DPHGIEEFY_					0	0	0			REV__ENSG00000163554|ENST00000643759|SPTA1	REV__ENSG00000163554|ENST00000643759|SPTA1	MSMS	A375_MHC_IP_R2	2	553.6671752929688	2	553.743096	1105.47164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.909	1	51.663	51.163	52.163	0.75406								0	0	0	0.15486	1	19151	19151		10.824	1.4408	1		+		6737	20378	4705	4751	6550	6550					-0.07687717070029976
DPHHPRLHF	9	Unmodified	_DPHHPRLHF_					0	0	0			REV__ENSG00000155903|ENST00000286364|RASA2	REV__ENSG00000155903|ENST00000286364|RASA2	MULTI-MSMS	A375_MHC_IP_R2	2	578.692626953125	2	578.293956	1154.57336	-0.21991	-0.00012717	-0.76861	-0.00044448	-0.98852	-0.00057166	578.2933146265241	77.771	0.76793	78.514	77.958	78.726	0.74293					32	14	3	0	0	0	0.61998	1	29507	29507		13.906	0	1	6862800	+		6738	19948	4706	4752	6551	6551					0.0022561886303265055
DPHKSLEEV	9	Unmodified	_DPHKSLEEV_					0	0	0		nc|ENSG00000156050|Q96MY7-2|FAM161B;ENSG00000156050|ENST00000286544|FAM161B;ENST00000555916.1_1_14:74389420-74404769:-|nuORF	nc|ENSG00000156050|Q96MY7-2|FAM161B	nc|ENSG00000156050|Q96MY7-2|FAM161B	MULTI-MSMS	A375_MHC_IP_R2	2	528.689208984375	2	527.264196	1052.51384	-0.8134	-0.00042888	-0.037902	-1.9984E-05	-0.85131	-0.00044886	527.2642074610445	60.082	1.572	60.829	60.349	61.921	0.74714					105	30	6	0	0	0	0.2002	1	22886	22886		37.974	8.8924	1	391240000			6739	6171	4707	4753	6552	6552					-0.01031741661677188
DPHWVTSGQL	10	Unmodified	_DPHWVTSGQL_					0	0	0			REV__nc|ENSG00000099204|O14639-4|ABLIM1	REV__nc|ENSG00000099204|O14639-4|ABLIM1	MULTI-SECPEP	A375_MHC_IP_R2	2	569.6992797851562	2	570.277638	1138.54072	-0.3447	-0.00019657	-1.7223	-0.00098217	-2.067	-0.0011787	570.2758962145389	32.323	0.45824	33.06	32.909	33.367	0.73692					11	8	2	0	0	0	0.90513	1	11446	11446		12.241	0	1	1398200	+		6740	17012	4708	4754	6553	6553					-0.023006330504586003
DPIAIKDLKPL	11	Unmodified	_DPIAIKDLKPL_					0	0	0			REV__ENSG00000138792|ENST00000265162|ENPEP	REV__ENSG00000138792|ENST00000265162|ENPEP	MULTI-MSMS	A375_MHC_IP_R1	1	408.6517639160156	3	408.251701	1221.73327	-0.061506	-2.511E-05	0.12353	5.0433E-05	0.062028	2.5323E-05	408.2516660536504	56.016	0.55719	56.016	55.79	56.347	0					25	10	3	0	0	0	0.73195	1	20043	20043		7.0371	2.3212	1	8644500	+		6741	19123	4709	4755	6554	6554					0.13127689296834433
DPIAIKDLKPL	11	Unmodified	_DPIAIKDLKPL_					0	0	0			REV__ENSG00000138792|ENST00000265162|ENPEP	REV__ENSG00000138792|ENST00000265162|ENPEP	MULTI-MSMS	A375_MHC_IP_R2	2	408.6514892578125	3	408.251701	1221.73327	-0.10853	-4.4309E-05	-0.11853	-4.8391E-05	-0.22707	-9.27E-05	408.2516138638634	55.187	0.61083	55.938	55.626	56.237	0.75075					31	11	4	0	0	0	0.67023	1	20814	20814		17.863	13.147	1	6467500	+		6742	19123	4709	4755	6555	6555					0.13127689296834433
DPIAIKDLKPL	11	Unmodified	_DPIAIKDLKPL_					0	0	0			REV__ENSG00000138792|ENST00000265162|ENPEP	REV__ENSG00000138792|ENST00000265162|ENPEP	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	408.251701	1221.73327	-0.061506	-2.511E-05	0.12353	5.0433E-05	0.062028	2.5323E-05	408.2516660536504	56.016	0.55719	56.016	55.79	56.347	0	0.038848	0.00016428	NaN	17.863	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8644500	+		6743	19123	4709	4755							0.13127689296834433
DPIAIKDLKPL	11	Unmodified	_DPIAIKDLKPL_					0	0	0			REV__ENSG00000138792|ENST00000265162|ENPEP	REV__ENSG00000138792|ENST00000265162|ENPEP	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	408.251701	1221.73327	-0.10853	-4.4309E-05	-0.11853	-4.8391E-05	-0.22707	-9.27E-05	408.2516138638634	55.187	0.61083	55.938	55.626	56.237	0.75075	-0.038848	-0.00013219	NaN	17.863	31	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6467500	+		6744	19123	4709	4755							0.13127689296834433
DPIDPAHKPSL	11	Unmodified	_DPIDPAHKPSL_					0	0	0			REV__ENSG00000011677|ENST00000370314|GABRA3	REV__ENSG00000011677|ENST00000370314|GABRA3	MSMS	A375_MHC_IP_R1	1	397.2598571777344	3	397.211906	1188.61389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.441	1	30.441	29.941	30.941	0								0	0	0	0.1624	1	9672	9672		6.2344	0.042509	1		+		6745	16217	4710	4756	6556	6556					0.02712495672130899
DPIDPAHKPSL	11	Unmodified	_DPIDPAHKPSL_					0	0	0			REV__ENSG00000011677|ENST00000370314|GABRA3	REV__ENSG00000011677|ENST00000370314|GABRA3	MULTI-MSMS	A375_MHC_IP_R2	2	397.2597961425781	3	397.211906	1188.61389	-0.50103	-0.00019901	-0.45972	-0.00018261	-0.96075	-0.00038162	397.21180039524256	29.832	0.55475	30.531	30.286	30.84	0.69872					16	10	3	0	0	0	0.7328	1	10369	10369		6.2344	0.042509	1	1855600	+		6746	16217	4710	4756	6557	6557					0.02712495672130899
DPIPKGRI	8	Unmodified	_DPIPKGRI_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R1	1	448.2861022949219	2	448.271627	894.528701	-0.1584	-7.1006E-05	0.73454	0.00032927	0.57614	0.00025827	448.27201102333925	58.927	0.45873	58.927	58.786	59.245	0					12	8	2	0	0	0	0.7766	1	21286	21286		7.2892	2.0586	1	1023100	+		6747	19932	4711	4757	6558	6558					0.07721794997007692
DPIPKGRI	8	Unmodified	_DPIPKGRI_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	448.271627	894.528701	-0.1584	-7.1006E-05	0.73454	0.00032927	0.57614	0.00025827	448.27201102333925	58.927	0.45873	58.927	58.786	59.245	0	0.077168	-6.4157E-05	NaN	7.2892	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1023100	+		6748	19932	4711	4757							0.07721794997007692
DPIPLLKQPA	10	Unmodified	_DPIPLLKQPA_					0	0	0			REV__nc|ENSG00000145016|Q92622-3|RUBCN	REV__nc|ENSG00000145016|Q92622-3|RUBCN	MULTI-MSMS	A375_MHC_IP_R2	2	364.9533386230469	3	364.553492	1090.63865	-0.29059	-0.00010594	-0.54741	-0.00019956	-0.838	-0.0003055	364.5532435231731	57.854	0.76029	58.603	58.323	59.083	0.74894					19	14	2	0	0	0	0.60385	1	21869	21869		20.581	3.1383	1	3465000	+		6749	19457	4712	4758	6559	6559					0.09695175545516577
DPIPRWWR	8	Unmodified	_DPIPRWWR_					0	0	0		ENST00000342556.6_2_12:57486948-57488472:+|nuORF	ENST00000342556.6_2_12:57486948-57488472:+|nuORF	ENST00000342556.6_2_12:57486948-57488472:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	375.26055908203125	3	375.869926	1124.58795	-0.18293	-6.8759E-05	1.2151	0.00045671	1.0322	0.00038796	375.87035592402987	25.573	0.71074	26.232	25.992	26.703	0.65992					15	13	2	0	0	0	0.972	1	8559	8559		10.074	6.1295	1	2974000			6750	10878	4713	4759	6560	6560					0.030636910111752513
DPIPRWWR	8	Unmodified	_DPIPRWWR_					0	0	0		ENST00000342556.6_2_12:57486948-57488472:+|nuORF	ENST00000342556.6_2_12:57486948-57488472:+|nuORF	ENST00000342556.6_2_12:57486948-57488472:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	375.27655029296875	3	375.869926	1124.58795	0.19927	7.49E-05	-0.6997	-0.000263	-0.50043	-0.0001881	375.86952784335256	32.796	0.50882	33.533	33.213	33.722	0.73691					13	9	2	0	0	0	0.972	1	11641	11641		8.7454	7.0031	1	950880			6751	10878	4713	4759	6561	6561					0.030636910111752513
DPIRVIKGF	9	Unmodified	_DPIRVIKGF_					0	0	0		ENST00000511797.5_1_4:2869713-2869782:+|nuORF	ENST00000511797.5_1_4:2869713-2869782:+|nuORF	ENST00000511797.5_1_4:2869713-2869782:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	522.1458129882812	2	522.813659	1043.61277	-0.48883	-0.00025557	-0.29397	-0.00015369	-0.78281	-0.00040926	522.8135561910294	60.182	0.50908	60.182	59.905	60.414	0					21	9	3	0	0	0	0.69507	1	21618	21618		19.257	19.257	1	2829800			6752	12913	4714	4760	6562	6562					0.09270326093883341
DPISLDAKVF	10	Unmodified	_DPISLDAKVF_					0	0	0			REV__nc|ENSG00000170471|Q86X10-2|RALGAPB	REV__nc|ENSG00000170471|Q86X10-2|RALGAPB	MULTI-MSMS	A375_MHC_IP_R1	1	369.2694091796875	3	368.869368	1103.58628	0.29629	0.00010929	-0.14338	-5.2889E-05	0.15291	5.6405E-05	368.86923224163536	31.833	0.51056	31.833	31.565	32.075	0					13	9	2	0	0	0	0.69871	1	10248	10248		12.873	6.2422	1	2909700	+		6753	20997	4715	4761	6563	6563					0.03862592411906007
DPISLNAREYF	11	Unmodified	_DPISLNAREYF_					0	0	0		nc|ENSG00000188596|Q96N23-2|CFAP54;ENST00000342887.1_1_12:97043703-97159031:+|nuORF;ENSG00000188596|ENST00000524981|CFAP54	nc|ENSG00000188596|Q96N23-2|CFAP54	nc|ENSG00000188596|Q96N23-2|CFAP54	MULTI-SECPEP	A375_MHC_IP_R2	2	442.6224365234375	3	442.222582	1323.64592	-0.14664	-6.4846E-05	-0.66299	-0.00029319	-0.80962	-0.00035803	442.22230385341055	43.856	0.5041	44.625	44.278	44.782	0.7691					14	9	2	0	0	0	1.0002	1	16382	16382		1.3296	0.87513	1	2555100			6754	14824	4716	4762	6564	6564					-0.0029613664471526135
DPISLNAREYF	11	Unmodified	_DPISLNAREYF_					0	0	0		nc|ENSG00000188596|Q96N23-2|CFAP54;ENST00000342887.1_1_12:97043703-97159031:+|nuORF;ENSG00000188596|ENST00000524981|CFAP54	nc|ENSG00000188596|Q96N23-2|CFAP54	nc|ENSG00000188596|Q96N23-2|CFAP54	MULTI-MATCH	A375_MHC_IP_R1	1		3	442.222582	1323.64592	0.26883	0.00011888	-0.24681	-0.00010914	0.022024	9.7396E-06	442.2223809814114	44.464	0.4096	44.464	44.267	44.676	0	-0.080579	0.00025755	NaN	1.3296	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1789200			6755	14824	4716	4762							-0.0029613664471526135
DPIVIPPSIDA	11	Unmodified	_DPIVIPPSIDA_					0	0	0			REV__USP13|p.P627A|1|0.41|ENSG00000058056|chr3:179754812-179754812|C/G|missense_variant	REV__USP13|p.P627A|1|0.41|ENSG00000058056|chr3:179754812-179754812|C/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	379.9447937011719	3	379.544773	1135.61249	-0.279	-0.00010589	0.58764	0.00022304	0.30864	0.00011714	379.54488317435477	60.037	0.45542	60.784	60.553	61.008	0.74714					21	8	3	0	0	0	0.63737	1	22713	22713		16.275	0	1	4257700	+		6756	28965	4717	4763	6565	6565					0.05010861583400583
DPIWDDDSQ	9	Unmodified	_DPIWDDDSQ_					0	0	0			REV__ENSG00000113889|ENST00000644859|KNG1	REV__ENSG00000113889|ENST00000644859|KNG1	MULTI-SECPEP	A375_MHC_IP_R1	1	546.1377563476562	2	545.719818	1089.42508	-0.55107	-0.00030073	-0.22368	-0.00012207	-0.77476	-0.0004228	545.7196081473433	60.58	0.66124	60.58	60.261	60.922	0					27	12	3	0	0	0	0.65246	1	21697	21697		10.824	2.9138	1	4314400	+		6757	17807	4718	4764	6566	6566					-0.11605201692009359
DPKEDDPATNG	11	Unmodified	_DPKEDDPATNG_					0	0	0			REV__BOD1L1|p.S2975Lfs*72|1|0.17|ENSG00000038219|chr4:13576953-13576953|A/-|frameshift_variant	REV__BOD1L1|p.S2975Lfs*72|1|0.17|ENSG00000038219|chr4:13576953-13576953|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	580.1491088867188	2	579.749107	1157.48366	-0.1713	-9.9312E-05	0.081342	4.7158E-05	-0.089959	-5.2154E-05	579.7490501140076	25.179	0.45748	25.179	25.002	25.46	0					10	8	2	0	0	0	0.69759	1	7351	7351		15.739	3.498	1	3547500	+		6758	15521	4719	4765	6567	6567					-0.08878145117523673
DPKEGYEQY	9	Unmodified	_DPKEGYEQY_					0	0	0			REV__ENSG00000196646|ENST00000343979|ZNF136	REV__ENSG00000196646|ENST00000343979|ZNF136	MSMS	A375_MHC_IP_R2	2	564.689453125	2	564.745836	1127.47712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.908	1	25.552	25.052	26.052	0.64368								0	0	0	0.15468	1	8259	8259		13.906	3.0821	1		+		6759	22216	4720	4766	6568	6568					-0.08152038278217333
DPKEILHSVY	10	Unmodified	_DPKEILHSVY_					0	0	0		ENST00000328462.7_1_X:101035000-101035489:-|nuORF;ENST00000505994.1_1_4:120314876-120316112:-|nuORF;nc|ENSG00000198814|P32189-1|GK;nc|ENSG00000198814|P32189-4|GK;nc|ENSG00000198814|P32189-2|GK;ENSG00000229894|ENST00000505354|GK3;ENSG00000198814|ENST00000427190|GK	ENST00000328462.7_1_X:101035000-101035489:-|nuORF	ENST00000328462.7_1_X:101035000-101035489:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	401.253173828125	3	400.880156	1199.61864	-0.095836	-3.8419E-05	-1.7278	-0.00069264	-1.8236	-0.00073106	401.21334783387573	21.1	0.25281	21.1	20.946	21.199	0					6	4	2	0	0	0	0.69875	1	5465	5465		12.856	7.5591	1	619660			6760	9332	4721	4767	6569	6569					0.02681379814907814
DPKGVRELFCL	11	Unmodified	_DPKGVRELFCL_					0	0	0			REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-SECPEP	A375_MHC_IP_R1	1	425.6160583496094	3	426.228791	1275.66454	0.10519	4.4837E-05	2.1269	0.00090657	2.2321	0.0009514	426.22968464356745	21.239	0.50739	21.239	21.048	21.555	0					12	9	2	0	0	0	0.99778	1	5578	5578		2.084	0.62885	1	948280	+		6761	21445	4722	4768	6570	6570					0.0377370172548126
DPKKALQGFFD	11	Unmodified	_DPKKALQGFFD_					0	0	0		ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	MULTI-MSMS	A375_MHC_IP_R2	2	422.62255859375	3	422.555672	1264.64519	-0.18712	-7.9068E-05	2.869	0.0012123	2.6819	0.0011333	422.5567610638229	39.403	0.40569	40.177	40.016	40.422	0.77451					16	7	4	0	0	0	0.72651	1	14607	14607		12.228	1.9124	1	2225600			6762	6722	4723	4769	6571	6571					0.02345068706222264
DPKTFIPPDGN	11	Unmodified	_DPKTFIPPDGN_					0	0	0			REV__nc|ENSG00000179603|O00222-3|GRM8	REV__nc|ENSG00000179603|O00222-3|GRM8	MSMS	A375_MHC_IP_R2	2	400.927734375	3	400.868027	1199.58225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.799	1	34.551	34.051	35.051	0.75225								0	0	0	0.15183	1	12136	12136		11.631	0.11349	1		+		6763	21572	4724	4770	6572	6572					-0.009554970818271613
DPKTRLHDPV	10	Unmodified	_DPKTRLHDPV_					0	0	0			REV__ENST00000473560.1_1_1:43852218-43853308:-|nuORF	REV__ENST00000473560.1_1_1:43852218-43853308:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	393.2678527832031	3	393.21565	1176.62512	-0.4314	-0.00016963	1.7064	0.000671	1.275	0.00050136	393.2174181573296	24.033	0.20478	24.676	24.55	24.755	0.64306					5	3	2	0	0	0	0.7212	1	7795	7795		28.234	16.716	1	990770	+		6764	20125	4725	4771	6573	6573					0.043873177662590024
DPLAGHGRYDI	11	Unmodified	_DPLAGHGRYDI_					0	0	0			REV__ENSG00000181291|ENST00000631683|TMEM132E	REV__ENSG00000181291|ENST00000631683|TMEM132E	MULTI-SECPEP	A375_MHC_IP_R2	2	405.280029296875	3	405.203522	1212.58874	0.049042	1.9872E-05	-0.83407	-0.00033797	-0.78503	-0.0003181	405.20306922533865	41.959	0.25506	42.734	42.504	42.759	0.77451					10	4	3	0	0	0	0.92455	1	15575	15575		9.2438	2.6203	1	1585000	+		6765	21644	4726	4772	6574	6574					-0.009055591304331756
DPLDHRNFY	9	Unmodified	_DPLDHRNFY_					0	0	0		nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;ENST00000531732.5_1_11:12183702-12229694:+|nuORF	nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851|MICAL2	MULTI-SECPEP	A375_MHC_IP_R2	2	393.2524108886719	3	392.8526	1175.53597	-0.7589	-0.00029814	-0.06254	-2.4569E-05	-0.82144	-0.0003227	392.8525154332375	37.186	0.45547	37.957	37.716	38.171	0.7709					13	8	3	0	0	0	0.75519	1	13647	13647		14.405	9.0027	1	2371200			6766	14607	4727	4773	6575	6575					-0.04477517193231506
DPLDKMDCSL	10	Unmodified	_DPLDKMDCSL_					0	0	0			REV__ENST00000475645.1_1_6:106634169-106634241:-|nuORF	REV__ENST00000475645.1_1_6:106634169-106634241:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	379.29217529296875	3	379.503592	1135.48895	-0.28456	-0.00010799	1.0938	0.0004151	0.80925	0.00030711	379.50258861245044	22.946	0.3062	23.576	23.42	23.726	0.63014					8	5	2	0	0	0	0.91909	1	7305	7305		8.4443	3.0416	1	1145200	+		6767	25172	4728	4774	6576	6576					-0.07337880850900547
DPLELMTKW	9	Unmodified	_DPLELMTKW_					0	0	0			REV__ENSG00000116205|ENST00000234827|TCEANC2	REV__ENSG00000116205|ENST00000234827|TCEANC2	MULTI-SECPEP	A375_MHC_IP_R1	1	378.276611328125	3	378.195087	1131.56343	-0.021548	-8.1494E-06	0.76077	0.00028772	0.73922	0.00027957	378.1953790142386	41.43	0.96796	41.43	41.114	42.082	0					22	18	2	0	0	0	0.65246	1	14374	14374		15.248	10.351	1	3781800	+		6768	17946	4729	4775	6577	6577					0.002912500227921555
DPLEPRREVC	10	Unmodified	_DPLEPRREVC_					0	0	0		ENSG00000242252|ENST00000368272|BGLAP;ENST00000490491.5_2_1:156203516-156212950:+|nuORF	ENSG00000242252|ENST00000368272|BGLAP	ENSG00000242252|ENST00000368272|BGLAP	MULTI-SECPEP	A375_MHC_IP_R2	2	405.2799377441406	3	405.204645	1212.59211	0.082671	3.3499E-05	-2.1947	-0.00088931	-2.1121	-0.00085581	405.2040527738961	42.674	0.5582	43.446	43.116	43.674	0.7724					17	10	3	0	0	0	0.91909	1	15800	15800		3.0723	0	1	1956000			6769	9795	4730	4776	6578	6578					-0.005686323480631472
DPLHGQDLFY	10	Unmodified	_DPLHGQDLFY_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1;ENST00000527224.1_1_11:65837957-65984297:+|nuORF	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	MULTI-MSMS	A375_MHC_IP_R2	2	603.2557373046875	2	602.785296	1203.55604	-0.59606	-0.0003593	0.62578	0.00037721	0.029715	1.7912E-05	602.7853514384925	72.465	0.50792	73.2	73.022	73.53	0.73541					23	9	3	0	0	0	0.70651	1	27451	27451		9.3831	2.0939	1	4616400			6770	7935	4731	4777	6579	6579					-0.0375976625327894
DPLHGTGFCPY	11	Unmodified	_DPLHGTGFCPY_					0	0	0		ENST00000371361.3_1_10:96093651-96093822:-|nuORF	ENST00000371361.3_1_10:96093651-96093822:-|nuORF	ENST00000371361.3_1_10:96093651-96093822:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	603.778564453125	2	603.766049	1205.51754	-0.34646	-0.00020918	-1.4492	-0.00087495	-1.7956	-0.0010841	604.2655780319701	90.296	1.2173	91.028	90.699	91.916	0.7318					42	23	4	0	0	0	0.73332	1	34347	34347		5.7319	0.97584	1	2409500			6771	11173	4732	4778	6580	6580					-0.07699395159443156
DPLHSFRLL	9	Unmodified	_DPLHSFRLL_					0	0	0		ENST00000262177.8_1_7:157208975-157209158:+|nuORF	ENST00000262177.8_1_7:157208975-157209158:+|nuORF	ENST00000262177.8_1_7:157208975-157209158:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	366.9416198730469	3	366.541586	1096.60293	0.24414	8.9488E-05	0.21297	7.8061E-05	0.45711	0.00016755	366.5416323957095	50.661	0.55801	50.661	50.408	50.966	0					15	10	2	0	0	0	0.76187	1	17983	17983		4.5289	0	1	1880500			6772	10294	4733	4779	6581	6581					0.058491380885243416
DPLRLALHSI	10	Unmodified	_DPLRLALHSI_					0	0	0		ENSG00000236543|ENST00000430816|unknown	ENSG00000236543|ENST00000430816|unknown	ENSG00000236543|ENST00000430816|unknown	MULTI-SECPEP	A375_MHC_IP_R1	1	378.5841369628906	3	378.892507	1133.65569	0.59548	0.00022562	-1.0337	-0.00039165	-0.4382	-0.00016603	378.892134201236	21.307	1.8277	21.307	20.895	22.723	0					70	35	3	0	0	0	0.92603	1	5602	5602		12.873	6.6808	1	8787000			6773	9752	4734	4780	6582	6582					0.09421096151322672
DPLRPFVPAY	10	Unmodified	_DPLRPFVPAY_					0	0	0		ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	MULTI-SECPEP	A375_MHC_IP_R2	2	392.96575927734375	3	392.213358	1173.61824	-0.45649	-0.00017904	0.089648	3.5161E-05	-0.36684	-0.00014388	392.21331473455604	23.69	0.35595	24.32	24.129	24.485	0.63014					9	6	2	0	0	0	0.92389	1	7652	7652		3.8763	0.28927	1	1436500			6774	1837	4735	4781	6583	6583					0.038380048857106885
DPLRVRLLTYN	11	Unmodified	_DPLRVRLLTYN_					0	0	0			REV__nc|ENSG00000167671|Q9BZV1-2|UBXN6	REV__nc|ENSG00000167671|Q9BZV1-2|UBXN6	MULTI-SECPEP	A375_MHC_IP_R2	2	453.6172180175781	3	453.929621	1358.76703	-0.51241	-0.0002326	-0.2069	-9.3917E-05	-0.7193	-0.00032651	453.92956986519897	34.33	0.35751	35.082	34.904	35.262	0.75225					13	6	3	0	0	0	0.99607	1	12388	12388		8.2864	3.2389	1	2250600	+		6775	20783	4736	4782	6584	6584					0.1020011078862808
DPLYNFYHYFY	11	Unmodified	_DPLYNFYHYFY_					0	0	0		ENSG00000169006|ENST00000306928|NTSR2	ENSG00000169006|ENST00000306928|NTSR2	ENSG00000169006|ENST00000306928|NTSR2	MSMS	A375_MHC_IP_R1	1	514.6322021484375	3	514.562715	1540.66632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.309	1	45.309	44.809	45.809	0								0	0	0	0.16305	1	15850	15850		2.8433	1.5136	1				6776	7368	4737	4783	6585	6585					-0.08238965984924107
DPNIYALREQE	11	Unmodified	_DPNIYALREQE_					0	0	0			REV__ENST00000394563.4_1_X:85340081-85340624:-|nuORF	REV__ENST00000394563.4_1_X:85340081-85340624:-|nuORF	MSMS	A375_MHC_IP_R1	1	674.3278198242188	2	674.330598	1346.64664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.125	1	88.125	87.625	88.625	0								0	0	0	0.16232	1	32346	32346		6.6304	1.3335	1		+		6777	20855	4738	4784	6586	6586					-0.012813419956501093
DPNKTKMY	8	Unmodified	_DPNKTKMY_					0	0	0			REV__ENST00000590803.5_1_16:4747031-4751860:-|nuORF	REV__ENST00000590803.5_1_16:4747031-4751860:-|nuORF	MSMS	A375_MHC_IP_R1	1	498.6612243652344	2	498.744585	995.474617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.112	1	47.112	46.612	47.612	0								0	0	0	0.16876	1	16560	16560		19.439	1.304	1		+		6778	20827	4739	4785	6587	6587					-0.023301652168811415
DPNNDAFITY	10	Unmodified	_DPNNDAFITY_					0	0	0			REV__tr|U7STJ1|U7STJ1_FUSNUtetrahydrofolatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01423PE=3SV=1	REV__tr|U7STJ1|U7STJ1_FUSNUtetrahydrofolatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01423PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	585.760498046875	2	585.259111	1168.50367	-0.48903	-0.00028621	-1.9986	-0.0011697	-2.4876	-0.0014559	585.7594713437721	108.24	0.25571	108.99	108.86	109.12	0.75436					5	4	2	0	0	0	0.6502	1	40876	40876		17.113	4.0704	1	1241800	+		6779	28491	4740	4786	6588	6588					-0.07384349386893518
DPNNDAFITY	10	Unmodified	_DPNNDAFITY_					0	0	0			REV__tr|U7STJ1|U7STJ1_FUSNUtetrahydrofolatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01423PE=3SV=1	REV__tr|U7STJ1|U7STJ1_FUSNUtetrahydrofolatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01423PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	585.760498046875	2	585.259111	1168.50367	-0.48903	-0.00028621	-1.9986	-0.0011697	-2.4876	-0.0014559	585.7594713437721	108.24	0.25571	108.99	108.86	109.12	0.75436					5	4	2	0	0	0	0.90513	1	40876	40876		17.113	8.5196	1	1241800	+		6780	28491	4740	4786	6589	6589					-0.07384349386893518
DPNTGKVHTLL	11	Unmodified	_DPNTGKVHTLL_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	A375_MHC_IP_R1	1	399.25616455078125	3	398.887422	1193.64044	-0.49894	-0.00019902	0.78319	0.0003124	0.28425	0.00011338	398.8876483219046	38.126	0.66393	38.126	37.862	38.526	0					25	12	3	0	0	0	0.73195	1	12806	12806		7.0371	0.80273	1	2018600			6781	8958	4741	4787	6590	6590					0.051361845634801284
DPPFVKKMSG	10	Unmodified	_DPPFVKKMSG_					0	0	0			REV__nc|ENSG00000137409|Q9NZJ7-2|MTCH1	REV__nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-SECPEP	A375_MHC_IP_R2	2	553.702880859375	2	553.289159	1104.56377	-0.77543	-0.00042904	0.075738	4.1905E-05	-0.6997	-0.00038713	553.7912178409193	44.433	0.35487	45.202	44.934	45.289	0.76909					8	6	2	0	0	0	0.8528	1	16506	16506		16.149	2.2431	1	1579100	+		6782	19003	4742	4788	6591	6591					0.015666697426240717
DPPHDEKKF	9	Unmodified	_DPPHDEKKF_					0	0	0		nc|ENSG00000162843|B1ANS9-2|WDR64;nc|ENSG00000162843|B1ANS9|WDR64;ENSG00000162843|ENST00000437684|WDR64	nc|ENSG00000162843|B1ANS9-2|WDR64	nc|ENSG00000162843|B1ANS9-2|WDR64	MULTI-SECPEP	A375_MHC_IP_R2	2	371.2818908691406	3	371.517218	1111.52982	0.24824	9.2224E-05	0.26898	9.9932E-05	0.51722	0.00019216	371.51720553102166	26.961	0.76692	27.621	27.109	27.876	0.65992					24	14	3	0	0	0	0.76187	1	9179	9179		4.5289	0	1	3157500			6783	6603	4743	4789	6592	6592					-0.02148035424761474
DPPPIYIIK	9	Unmodified	_DPPPIYIIK_					0	0	0			REV__ENSG00000171763|ENST00000305560|SPATA5L1	REV__ENSG00000171763|ENST00000305560|SPATA5L1	MULTI-MSMS	A375_MHC_IP_R1	1	1056.6552734375	1	1055.61356	1054.60628	-0.099938	-0.0001055	-2.4862	-0.0026244	-2.5861	-0.0027299	1056.6149608297644	120.63	0.30242	120.63	120.35	120.65	0					6	5	2	0	0	0	0.72985	1	44615	44615		4.3292	0.38484	1	20324000	+		6784	21092	4744	4790	6593	6593					0.08116388142502728
DPPPKKRAR	9	Unmodified	_DPPPKKRAR_					0	0	0		ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	MULTI-SECPEP	A375_MHC_IP_R2	2	1064.986572265625	1	1064.63234	1063.62506	0.01486	1.5821E-05	-3.8859	-0.004137	-3.871	-0.0041212	1065.6295933940594	129	0.50723	129.24	128.96	129.47	0.23946					14	9	2	0	0	0	0.76187	1	50686	50686		7.2892	0	1	23355000			6785	1820	4745	4791	6594	6594					0.09579362556928572
DPPQLALHGF	10	Unmodified	_DPPQLALHGF_					0	0	0			REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2	REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6611328125	2	547.785099	1093.55564	-0.69037	-0.00037817	-2.6439	-0.0014483	-3.3343	-0.0018265	547.7831683198666	24.443	0.55597	24.443	24.296	24.852	0					12	7	3	0	0	0	0.76414	1	6995	6995		20.454	4.6064	1	3652500	+		6786	21602	4746	4792	6595	6595					0.012608588174998658
DPPRRVRLL	9	Unmodified	_DPPRRVRLL_					0	0	0			REV__ENST00000471223.1_1_1:3553438-3555449:-|nuORF	REV__ENST00000471223.1_1_1:3553438-3555449:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	375.2643737792969	3	374.568247	1120.68291	-0.012235	-4.5828E-06	-0.18892	-7.0762E-05	-0.20115	-7.5344E-05	374.56818028190054	22.542	0.61267	23.172	22.704	23.317	0.63014					20	11	3	0	0	0	0.80101	1	7070	7070		1.0715	0	1	1631400	+		6787	25114	4747	4793	6596	6596					0.12739624482355794
DPQIKGAEEGF	11	Unmodified	_DPQIKGAEEGF_					0	0	0			REV__ENSG00000100592|ENST00000360909|DAAM1	REV__ENSG00000100592|ENST00000360909|DAAM1	MULTI-MSMS	A375_MHC_IP_R2	2	397.58770751953125	3	397.527782	1189.56152	-0.12456	-4.9515E-05	-0.070836	-2.8159E-05	-0.19539	-7.7674E-05	397.8619070206289	27.827	0.20272	28.505	28.401	28.604	0.67857					5	3	2	0	0	0	0.72851	1	9557	9557		10.315	1.339	1	609590	+		6788	17106	4748	4794	6597	6597					-0.02568087461486357
DPQLIPEQITT	11	Unmodified	_DPQLIPEQITT_					0	0	0		nc|ENSG00000073712|Q96AC1-2|FERMT2;ENSG00000073712|ENST00000341590|FERMT2;nc|ENSG00000073712|Q96AC1-3|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	MULTI-SECPEP	A375_MHC_IP_R2	2	419.28948974609375	3	418.890721	1253.65033	-0.3957	-0.00016576	-1.3978	-0.00058554	-1.7935	-0.00075129	418.8897691683142	20.307	0.66114	20.918	20.6	21.262	0.61029					24	12	3	0	0	0	0.99331	1	6322	6322		2.4348	1.325	1	2941600			6789	1568	4749	4795	6598	6598					0.03365327778169558
DPQLSPGE	8	Unmodified	_DPQLSPGE_					0	0	0			REV__nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	REV__nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	842.020263671875	1	842.389039	841.381762	-0.30191	-0.00025432	-0.087284	-7.3527E-05	-0.38919	-0.00032785	842.3888977263904	63.539	0.61387	63.539	63.223	63.837	0					19	11	2	0	0	0	0.25204	1	22943	22943		62.573	3.8939	1	3519000	+		6790	27308	4750	4796	6599	6599					-0.0452734667861705
DPQLSPGE	8	Unmodified	_DPQLSPGE_					0	0	0			REV__nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	REV__nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	MULTI-SECPEP	A375_MHC_IP_R2	2	842.02001953125	1	842.389039	841.381762	-0.69008	-0.00058132	-1.0867	-0.00091547	-1.7768	-0.0014968	842.3891953592662	62.917	0.70741	63.659	63.282	63.989	0.74263					28	13	4	0	0	0	0.37815	1	23893	23893		38.176	5.3899	1	6448200	+		6791	27308	4750	4796	6600	6600					-0.0452734667861705
DPRKQIPNY	9	Unmodified	_DPRKQIPNY_					0	0	0			REV__ENST00000494673.1_1_6:31243358-31244615:+|nuORF	REV__ENST00000494673.1_1_6:31243358-31244615:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	376.932861328125	3	377.536612	1129.58801	0.1496	5.6479E-05	-0.60482	-0.00022834	-0.45523	-0.00017186	377.53586613813366	32.948	0.50489	32.948	32.535	33.04	0					13	9	2	0	0	0	0.75519	1	10662	10662		10.151	3.9162	1	1323200	+		6792	25439	4751	4797	6601	6601					0.02839646220513714
DPRLTKEKLDF	11	Unmodified	_DPRLTKEKLDF_					0	0	0		nc|ENSG00000075292|Q14966-2|ZNF638;nc|ENSG00000075292|Q14966-6|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638	nc|ENSG00000075292|Q14966-2|ZNF638	nc|ENSG00000075292|Q14966-2|ZNF638	MSMS	A375_MHC_IP_R1	1	454.6476745605469	3	454.585632	1360.73507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.884	1	45.884	45.384	46.384	0								0	0	0	0.16124	1	16075	16075		6.6235	2.2173	1				6793	1606	4752	4798	6602	6602					0.0691269831477257
DPRSSPLIQFH	11	Unmodified	_DPRSSPLIQFH_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	MSMS	A375_MHC_IP_R1	1	648.9854736328125	2	648.838394	1295.66223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.494	1	20.494	19.994	20.994	0								0	0	0	0.16273	1	5271	5271		4.5289	1.5336	1				6794	8455	4753	4799	6603	6603					0.026229893120444103
DPRTYPKTV	9	Unmodified	_DPRTYPKTV_					0	0	0		ENST00000373998.5_1_X:70474787-70474928:-|nuORF	ENST00000373998.5_1_X:70474787-70474928:-|nuORF	ENST00000373998.5_1_X:70474787-70474928:-|nuORF	MSMS	A375_MHC_IP_R1	1	359.4283142089844	3	359.529346	1075.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.002	1	21.002	20.502	21.502	0								0	0	0	0.15486	1	5464	5464		8.1555	2.8586	1				6795	11246	4754	4800	6604	6604					0.03144841471953441
DPSAHFYGH	9	Unmodified	_DPSAHFYGH_					0	0	0		nc|ENSG00000107821|Q96I82-2|KAZALD1;ENSG00000107821|ENST00000370200|KAZALD1	nc|ENSG00000107821|Q96I82-2|KAZALD1	nc|ENSG00000107821|Q96I82-2|KAZALD1	MULTI-SECPEP	A375_MHC_IP_R1	1	1030.07861328125	1	1030.43772	1029.43044	0.28382	0.00029246	-4.3442	-0.0044764	-4.0604	-0.004184	1031.4382377664192	118.13	0.30334	118.13	117.87	118.17	0					7	5	2	0	0	0	0.75466	1	43418	43418		0.45834	0	1	14056000			6796	2763	4755	4801	6605	6605					-0.08309433318868287
DPSASDHDEDQ	11	Unmodified	_DPSASDHDEDQ_					0	0	0			REV__ENST00000394318.7_1_17:37224095-37235479:-|nuORF	REV__ENST00000394318.7_1_17:37224095-37235479:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	608.6671142578125	2	608.223453	1214.43235	-0.52199	-0.00031749	0.7961	0.0004842	0.27411	0.00016672	608.2239117355466	24.22	0.45565	24.22	24.092	24.547	0					12	8	2	0	0	0	0.99791	1	6963	6963		2.4985	2.1479	1	7074700	+		6797	20207	4756	4802	6606	6606					-0.16628513882210427
DPSDFCPDDY	10	Unmodified	_DPSDFCPDDY_					0	0	0			REV__ENSG00000129152|ENST00000250003|MYOD1	REV__ENSG00000129152|ENST00000250003|MYOD1	MULTI-MSMS	A375_MHC_IP_R1	1	587.727294921875	2	587.205686	1172.39682	-0.398	-0.00023371	2.4492	0.0014382	2.0512	0.0012045	587.7075448566277	90.025	0.30412	90.025	89.931	90.235	0					7	5	2	0	0	0	0.71866	1	33098	33098		3.9444	1.6417	1	999180	+		6798	18482	4757	4803	6607	6607					-0.18248267663602746
DPSECPVDDY	10	Unmodified	_DPSECPVDDY_					0	0	0			REV__nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L	REV__nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L	MULTI-SECPEP	A375_MHC_IP_R2	2	570.4113159179688	2	570.213511	1138.41247	-0.1588	-9.0549E-05	-3.9509	-0.0022528	-4.1097	-0.0023434	570.7125797132588	85.323	0.2551	86.059	85.933	86.188	0.73601					5	4	2	0	0	0	0.93799	1	32430	32430		0.35063	0	1	2800700	+		6799	16645	4758	4804	6608	6608					-0.1511998114654034
DPSFLYRSLS	10	Unmodified	_DPSFLYRSLS_					0	0	0		nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF;ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF	nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF	nc|ENSG00000242802|O43299-2|AP5Z1	MULTI-SECPEP	A375_MHC_IP_R1	1	394.9351501464844	3	395.536389	1183.58734	-0.076721	-3.0346E-05	0.23681	9.3667E-05	0.16009	6.3321E-05	395.5363591545628	19.883	0.45528	19.883	19.674	20.129	0					14	7	3	0	0	0	0.83355	1	4954	4954		7.4771	2.4295	1	2143100			6800	9803;12446	4759	4805	6609	6609					0.002888067808271444
DPSLCTHLIY	10	Unmodified	_DPSLCTHLIY_					0	0	0		nc|ENSG00000133063|Q13231-2|CHIT1;nc|ENSG00000133063|Q13231-3|CHIT1;nc|ENSG00000133063|Q13231-4|CHIT1;ENSG00000133063|ENST00000367229|CHIT1	nc|ENSG00000133063|Q13231-2|CHIT1	nc|ENSG00000133063|Q13231-2|CHIT1	MULTI-SECPEP	A375_MHC_IP_R1	1	388.6059875488281	3	387.858475	1160.5536	0.05141	1.994E-05	-0.3869	-0.00015006	-0.33549	-0.00013012	387.8584064543729	27.045	1.0577	27.045	26.779	27.836	0					32	20	3	0	0	0	0.91556	1	8384	8384		0.56317	0.56317	1	2635200			6801	4480	4760	4806	6610	6610					-0.02025937982580217
DPSLFAPYEV	10	Unmodified	_DPSLFAPYEV_					0	0	0			REV__nc|ENSG00000155754|Q53TS8-1|C2CD6	REV__nc|ENSG00000155754|Q53TS8-1|C2CD6	MULTI-MSMS	A375_MHC_IP_R1	1	569.677001953125	2	569.276772	1136.53899	0.042714	2.4316E-05	-0.13984	-7.9606E-05	-0.097124	-5.529E-05	569.2767207855951	112.52	1.5235	112.52	112.08	113.6	0					82	29	4	0	0	0	0.028981	2	41202	41159;41202		81.89	28.057	1	17821000	+		6802	19936	4761	4807	6611;6612	6612					-0.02381686859121146
DPSLFAPYEV	10	Unmodified	_DPSLFAPYEV_					0	0	0			REV__nc|ENSG00000155754|Q53TS8-1|C2CD6	REV__nc|ENSG00000155754|Q53TS8-1|C2CD6	MULTI-SECPEP	A375_MHC_IP_R1	1	569.6767578125	2	569.276772	1136.53899	0.042714	2.4316E-05	-0.13984	-7.9606E-05	-0.097124	-5.529E-05	569.2767207855951	112.52	1.5235	112.52	112.08	113.6	0					82	29	4	0	0	0	0.6774	1	41409	41409		27.629	1.3607	1	17821000	+		6803	19936	4761	4807	6613	6613					-0.02381686859121146
DPSLFAPYEV	10	Unmodified	_DPSLFAPYEV_					0	0	0			REV__nc|ENSG00000155754|Q53TS8-1|C2CD6	REV__nc|ENSG00000155754|Q53TS8-1|C2CD6	MULTI-SECPEP	A375_MHC_IP_R1	1	1137.374267578125	1	1137.54627	1136.53899	0.42007	0.00047785	-0.13823	-0.00015725	0.28184	0.00032061	1137.545962754135	112.71	1.3197	112.71	112.18	113.5	0					56	25	3	0	0	0	0.33054	1	41247	41247		56.177	2.3442	1	12422000	+		6804	19936	4761	4807	6614	6614					-0.02381686859121146
DPSNAQNIRL	10	Unmodified	_DPSNAQNIRL_					0	0	0			REV__ENSG00000164961|ENST00000318410|WASHC5	REV__ENSG00000164961|ENST00000318410|WASHC5	MULTI-SECPEP	A375_MHC_IP_R2	2	376.9209899902344	3	376.531638	1126.57309	0.067896	2.5565E-05	1.9051	0.00071735	1.973	0.00074291	376.5328777733776	36.053	0.6594	36.817	36.183	36.842	0.76338					18	12	2	0	0	0	0.92957	1	13052	13052		5.7834	0.73591	1	1352700	+		6805	20534	4762	4808	6615	6615					0.014861543525057641
DPSNTLLREG	10	Unmodified	_DPSNTLLREG_					0	0	0		ENSG00000146192|ENST00000274963|FGD2;ENST00000493635.1_1_6:36982408-36988336:+|nuORF;ENST00000373535.6_1_6:36981409-36988336:+|nuORF;ENST00000464083.5_1_6:36982408-36995936:+|nuORF;ENST00000494343.5_1_6:36981367-36995936:+|nuORF	ENSG00000146192|ENST00000274963|FGD2	ENSG00000146192|ENST00000274963|FGD2	MULTI-SECPEP	A375_MHC_IP_R2	2	367.9566650390625	3	367.85601	1100.5462	-0.066922	-2.4618E-05	3.5752	0.0013151	3.5083	0.0012905	368.19189409827226	33.237	0.45863	33.989	33.737	34.196	0.75225					9	8	2	0	0	0	0.91909	1	11905	11905		3.0723	0	1	825880			6806	5607	4763	4809	6616	6616					-4.9542586793904775E-05
DPSPNILIY	9	Unmodified	_DPSPNILIY_					0	0	0			REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2	REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2	MULTI-MSMS	A375_MHC_IP_R1	1	516.6731567382812	2	516.274032	1030.53351	-0.5742	-0.00029645	-0.063066	-3.256E-05	-0.63727	-0.00032901	516.2738717603687	87.61	0.714	87.61	87.134	87.848	0					18	13	2	0	0	0	0.14922	1	32119	32119		41.84	3.6641	1	2657800	+		6807	20291	4764	4810	6617	6617					0.019466343491103544
DPSPNILIY	9	Unmodified	_DPSPNILIY_					0	0	0			REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2	REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2	MULTI-SECPEP	A375_MHC_IP_R2	2	516.6734008789062	2	516.274032	1030.53351	-0.63917	-0.00032999	0.14389	7.4284E-05	-0.49529	-0.0002557	516.2738780330415	86.783	0.60786	87.516	87.255	87.863	0.733					20	11	2	0	0	0	0.13064	1	33018	33018		65.235	5.1611	1	2593600	+		6808	20291	4764	4810	6618	6618					0.019466343491103544
DPSPNILIY	9	Unmodified	_DPSPNILIY_					0	0	0			REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2	REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	516.274032	1030.53351	-0.5742	-0.00029645	-0.063066	-3.256E-05	-0.63727	-0.00032901	516.2738717603687	87.61	0.714	87.61	87.134	87.848	0	0.046788	-7.4589E-05	NaN	56.177	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2657800	+		6809	20291	4764	4810							0.019466343491103544
DPSQESHTE	9	Unmodified	_DPSQESHTE_					0	0	0		ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	MULTI-MSMS	A375_MHC_IP_R2	2	515.166259765625	2	515.209618	1028.40468	-0.92682	-0.00047751	-1.0195	-0.00052523	-1.9463	-0.0010027	515.2090994322824	65.649	0.4566	66.387	66.018	66.475	0.73811					11	8	2	0	0	0	0.65721	1	24917	24917		10.824	0.75	1	1321200			6810	1436	4765	4811	6619	6619					-0.108383723517818
DPSRSVFKPF	10	Unmodified	_DPSRSVFKPF_					0	0	0		ENST00000581645.5_1_17:45915212-45916069:-|nuORF;nc|ENSG00000141295|Q96FV2-2|SCRN2;ENSG00000141295|ENST00000290216|SCRN2	ENST00000581645.5_1_17:45915212-45916069:-|nuORF	ENST00000581645.5_1_17:45915212-45916069:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	394.276611328125	3	393.876746	1178.60841	0.10128	3.9892E-05	-0.072869	-2.8701E-05	0.02841	1.119E-05	393.8766414408287	57.097	0.45864	57.097	56.804	57.263	0					19	8	3	0	0	0	0.72006	1	20464	20464		3.3196	0	1	2404100			6811	5225	4766	4812	6620	6620					0.026248168803022054
DPSRSVFKPF	10	Unmodified	_DPSRSVFKPF_					0	0	0		ENST00000581645.5_1_17:45915212-45916069:-|nuORF;nc|ENSG00000141295|Q96FV2-2|SCRN2;ENSG00000141295|ENST00000290216|SCRN2	ENST00000581645.5_1_17:45915212-45916069:-|nuORF	ENST00000581645.5_1_17:45915212-45916069:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	393.876746	1178.60841	0.10128	3.9892E-05	-0.072869	-2.8701E-05	0.02841	1.119E-05	393.8766414408287	57.097	0.45864	57.097	56.804	57.263	0	0.086993	5.0211E-06	NaN	3.3196	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2404100			6812	5225	4766	4812							0.026248168803022054
DPSSKSTEIKW	11	Unmodified	_DPSSKSTEIKW_					0	0	0		nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;ENST00000553886.1_1_14:51903223-51903304:+|nuORF	nc|ENSG00000119335|Q01105-3|SET	nc|ENSG00000119335|Q01105-3|SET	MULTI-MSMS	A375_MHC_IP_R1	1	639.7217407226562	2	639.322242	1276.62993	-0.29055	-0.00018576	0.3533	0.00022587	0.062749	4.0117E-05	639.3221250345637	39.008	0.40669	39.008	38.78	39.187	0					10	7	2	0	0	0	0.024878	1	13332	13332		84.738	58.47	1	2441900			6813	3585	4767	4813	6621	6621					0.0026815711835297407
DPSSKSTEIKW	11	Unmodified	_DPSSKSTEIKW_					0	0	0		nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;ENST00000553886.1_1_14:51903223-51903304:+|nuORF	nc|ENSG00000119335|Q01105-3|SET	nc|ENSG00000119335|Q01105-3|SET	MULTI-SECPEP	A375_MHC_IP_R1	1	426.9504699707031	3	426.550587	1276.62993	0.23101	9.8538E-05	-0.29585	-0.00012619	-0.064835	-2.7655E-05	426.55046648377265	39.008	0.55969	39.008	38.78	39.34	0					17	10	2	0	0	0	0.50216	1	13303	13303		56.328	56.328	1	5622000			6814	3585	4767	4813	6622	6622					0.0026815711835297407
DPSSKSTEIKW	11	Unmodified	_DPSSKSTEIKW_					0	0	0		nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;ENST00000553886.1_1_14:51903223-51903304:+|nuORF	nc|ENSG00000119335|Q01105-3|SET	nc|ENSG00000119335|Q01105-3|SET	MULTI-MSMS	A375_MHC_IP_R2	2	426.950439453125	3	426.550587	1276.62993	-0.49471	-0.00021102	0.10635	4.5363E-05	-0.38836	-0.00016565	426.5506416384655	38.262	0.51118	39.036	38.739	39.25	0.77451					21	9	3	0	0	0	0.020594	1	14052	14052		66.84	43.5	1	4321400			6815	3585	4767	4813	6623	6623					0.0026815711835297407
DPSSKSTEIKW	11	Unmodified	_DPSSKSTEIKW_					0	0	0		nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;ENST00000553886.1_1_14:51903223-51903304:+|nuORF	nc|ENSG00000119335|Q01105-3|SET	nc|ENSG00000119335|Q01105-3|SET	MULTI-MATCH	A375_MHC_IP_R2	2		2	639.322242	1276.62993	-1.0731	-0.00068603	0.50807	0.00032482	-0.56498	-0.00036121	639.3222268431928	38.256	0.41002	39.031	38.739	39.149	0.77451	0.011388	8.6297E-05	NaN	84.738	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1999800			6816	3585	4767	4813							0.0026815711835297407
DPSTGCYMYY	10	Unmodified	_DPSTGCYMYY_					0	0	0		ENST00000437519.5_1_12:123868737-123892247:+|nuORF;ENST00000413684.1_1_2:91935968-91936997:-|nuORF;ENSG00000183955|ENST00000402868|KMT5A;nc|ENSG00000183955|Q9NQR1|KMT5A	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	599.6761474609375	2	600.222825	1198.4311	-0.44133	-0.0002649	-0.73433	-0.00044076	-1.1757	-0.00070566	600.2223040340034	46.116	0.60842	46.881	46.654	47.262	0.76519					17	11	2	0	0	0	0.93615	1	17325	17325		7.2892	3.3448	1	2275800			6817	8545	4768	4814	6624	6624					-0.16018142776329114
DPSVLGKY	8	Unmodified	_DPSVLGKY_					0	0	0		ENSG00000114315|ENST00000232424|HES1;HES1|p.Q149Pfs*66|1|0.44|ENSG00000114315|chr3:194137832-194137833|-/C|frameshift_variant	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-SECPEP	A375_MHC_IP_R1	1	878.3378295898438	1	878.46181	877.454533	-0.07597	-6.6736E-05	0.14639	0.0001286	0.070422	6.1863E-05	878.4617682359301	45.693	0.45685	45.693	45.484	45.941	0					14	8	2	0	0	0	0.55971	1	16011	16011		60.074	27.768	1	2563300			6818	3209	4769	4815	6625	6625					0.010904071148161165
DPSVLGKY	8	Unmodified	_DPSVLGKY_					0	0	0		ENSG00000114315|ENST00000232424|HES1;HES1|p.Q149Pfs*66|1|0.44|ENSG00000114315|chr3:194137832-194137833|-/C|frameshift_variant	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-SECPEP	A375_MHC_IP_R2	2	878.3370971679688	1	878.46181	877.454533	-0.65035	-0.00057131	0.10241	8.9963E-05	-0.54794	-0.00048134	878.4617338731617	44.903	0.50945	45.672	45.492	46.001	0.7691					14	9	2	0	0	0	0.60112	1	16840	16840		57.722	27.085	1	2760800			6819	3209	4769	4815	6626	6626					0.010904071148161165
DPSYYLNRRAW	11	Unmodified	_DPSYYLNRRAW_					0	0	0			REV__nc|ENSG00000182333|P07098-2|LIPF	REV__nc|ENSG00000182333|P07098-2|LIPF	MULTI-MSMS	A375_MHC_IP_R1	1	721.7548828125	2	720.854575	1439.6946	-0.48265	-0.00034792	-1.0068	-0.00072577	-1.4895	-0.0010737	721.3552295310233	55.996	0.40474	55.996	55.79	56.194	0					19	7	3	0	0	0	0.72649	1	20047	20047		12.241	2.8575	1	8922400	+		6820	21686	4770	4816	6627	6627					-0.007662232849725115
DPTREAQATY	10	Unmodified	_DPTREAQATY_					0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	MULTI-SECPEP	A375_MHC_IP_R1	1	576.6810913085938	2	576.27001	1150.52547	-0.44987	-0.00025925	0.25847	0.00014895	-0.1914	-0.0001103	576.269835212885	25.945	0.50612	25.945	25.765	26.271	0					19	9	3	0	0	0	0.51493	1	7618	7618		24.991	0.97039	1	6442500	+		6821	21936	4771	4817	6628	6628					-0.043775446383278904
DPTREAQATY	10	Unmodified	_DPTREAQATY_					0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	MULTI-SECPEP	A375_MHC_IP_R2	2	576.6694946289062	2	576.27001	1150.52547	-0.61846	-0.0003564	0.14654	8.4449E-05	-0.47192	-0.00027195	576.2699528355364	25.409	0.45739	26.053	25.873	26.33	0.64368					14	8	2	0	0	0	0.60238	1	8501	8501		32.786	3.7041	1	9333500	+		6822	21936	4771	4817	6629	6629					-0.043775446383278904
DPTSNDIFE	9	Unmodified	_DPTSNDIFE_					0	0	0		PCDH15|p.T203I|1|0.32|ENSG00000150275|chr10:54329693-54329693|G/A|missense_variant	PCDH15|p.T203I|1|0.32|ENSG00000150275|chr10:54329693-54329693|G/A|missense_variant	PCDH15|p.T203I|1|0.32|ENSG00000150275|chr10:54329693-54329693|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	519.6663208007812	2	519.224736	1036.43492	-0.48345	-0.00025102	-0.39076	-0.00020289	-0.87421	-0.00045391	519.2244741645899	63.487	0.56305	63.487	63.223	63.786	0					18	10	2	0	0	0	0.60101	1	23005	23005		14.838	0.93222	1	3085000			6823	15115	4772	4818	6630	6630					-0.08184013686604885
DPVCCSLIMTV	11	Unmodified	_DPVCCSLIMTV_					0	0	0		ENST00000542922.5_1_11:62651383-62651581:+|nuORF	ENST00000542922.5_1_11:62651383-62651581:+|nuORF	ENST00000542922.5_1_11:62651383-62651581:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	393.93780517578125	3	394.185206	1179.53379	0.24049	9.4798E-05	1.1922	0.00046995	1.4327	0.00056475	394.1857467965782	21.186	0.5584	21.186	20.895	21.454	0					16	10	2	0	0	0	0.9754	1	5640	5640		6.6235	0	1	1745000			6824	13306	4773	4819	6631	6631					-0.04879773309221491
DPVCGGHL	8	Unmodified	_DPVCGGHL_					0	0	0			REV__ENST00000548477.5_1_12:113758134-113758563:-|nuORF	REV__ENST00000548477.5_1_12:113758134-113758563:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	399.63629150390625	2	399.184163	796.353773	-0.095718	-3.8209E-05	3.5354	0.0014113	3.4397	0.0013731	399.1863451880248	31.295	0.20497	32.013	31.872	32.077	0.71857					6	3	2	0	0	0	0.77702	1	11017	11017		5.7604	2.8712	1	563470	+		6825	26015	4774	4820	6632	6632					-0.05254948139690896
DPVKVIEKKL	10	Unmodified	_DPVKVIEKKL_					0	0	0		nc|ENSG00000073737|Q9BPW9-2|DHRS9;ENSG00000073737|ENST00000674881|DHRS9;nc|ENSG00000073737|Q9BPW9-4|DHRS9	nc|ENSG00000073737|Q9BPW9-2|DHRS9	nc|ENSG00000073737|Q9BPW9-2|DHRS9	MSMS	A375_MHC_IP_R1	1	390.2851257324219	3	390.24818	1167.72271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.296	1	63.296	62.796	63.796	0								0	0	0	0.15486	1	22876	22876		5.0475	0.3316	1				6826	1569	4775	4821	6633	6633					0.1455570664240895
DPVKYLRFW	9	Unmodified	_DPVKYLRFW_					0	0	0			REV__nc|ENSG00000138777|Q9H2U2-4|PPA2	REV__nc|ENSG00000138777|Q9H2U2-4|PPA2	MULTI-SECPEP	A375_MHC_IP_R2	2	407.88311767578125	3	408.557236	1222.64988	-0.29649	-0.00012113	-0.67851	-0.00027721	-0.97501	-0.00039835	408.55702669483884	19.98	0.86036	20.591	19.892	20.752	0.61029					23	16	2	0	0	0	0.79429	1	5988	5988		4.1895	0.31317	1	4611700	+		6827	19121	4776	4822	6634	6634					0.04745997639656707
DPVRPIDPAAW	11	Unmodified	_DPVRPIDPAAW_					0	0	0		nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1	nc|ENSG00000107404|O14640-2|DVL1	nc|ENSG00000107404|O14640-2|DVL1	MULTI-SECPEP	A375_MHC_IP_R1	1	619.2218627929688	2	618.822212	1235.62987	-0.31369	-0.00019412	-0.27821	-0.00017216	-0.59191	-0.00036628	618.8219508489059	101.58	0.75892	101.58	101.19	101.95	0					18	12	2	0	0	0	0.95449	1	37329	37329		11.518	0	1	3421200			6828	2738	4777	4823	6635	6635					0.02148201909017189
DPYEEHGLI	9	Unmodified	_DPYEEHGLI_					0	0	0		ENSG00000163528|ENST00000396914|CHCHD4;nc|ENSG00000163528|Q8N4Q1-2|CHCHD4	ENSG00000163528|ENST00000396914|CHCHD4	ENSG00000163528|ENST00000396914|CHCHD4	MULTI-MSMS	A375_MHC_IP_R1	1	536.7241821289062	2	536.750921	1071.48729	-0.47129	-0.00025297	0.21888	0.00011749	-0.25241	-0.00013548	536.7509048814674	70.11	0.81547	70.11	69.832	70.648	0					25	15	2	0	0	0	0.64808	1	25639	25639		11.64	3.047	1	3828600			6829	6679	4778	4824	6636	6636					-0.045594305529675694
DPYEHEALF	9	Unmodified	_DPYEHEALF_					0	0	0		ENST00000509696.5_1_4:7062591-7066009:-|nuORF;ENSG00000109519|ENST00000264954|GRPEL1	ENST00000509696.5_1_4:7062591-7066009:-|nuORF	ENST00000509696.5_1_4:7062591-7066009:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	561.1503295898438	2	560.750921	1119.48729	-0.64264	-0.00036036	0.090181	5.0569E-05	-0.55246	-0.00030979	560.7509103525941	72.973	0.56053	73.709	73.429	73.99	0.73541					17	10	3	0	0	0	0.091096	1	27715	27715		52.268	22.044	1	2446400			6830	2873	4779	4825	6637	6637					-0.06767430553009035
DPYYYKKKN	9	Unmodified	_DPYYYKKKN_					0	0	0		ENSG00000136546|ENST00000643258|SCN7A;SCN7A|p.I966Ffs*3|1|0.2|ENSG00000136546|chr2:166423394-166423394|A/-|frameshift_variant	ENSG00000136546|ENST00000643258|SCN7A	ENSG00000136546|ENST00000643258|SCN7A	MULTI-SECPEP	A375_MHC_IP_R2	2	407.1529846191406	3	406.876634	1217.60807	-0.2661	-0.00010827	0.44643	0.00018164	0.18033	7.3374E-05	406.87662751383664	37.535	0.61322	38.306	38.07	38.684	0.7709					27	11	3	0	0	0	0.75466	1	13855	13855		4.897	4.2702	1	3630200			6831	4799	4780	4826	6638	6638					0.007973971604769758
DQACPHQRY	9	Unmodified	_DQACPHQRY_					0	0	0			REV__ENSG00000070018|ENST00000261349|LRP6	REV__ENSG00000070018|ENST00000261349|LRP6	MULTI-SECPEP	A375_MHC_IP_R1	1	559.6664428710938	2	559.245815	1116.47708	-0.78168	-0.00043715	3.7201	0.0020805	2.9385	0.0016433	559.2471621298082	23.713	0.20315	23.713	23.584	23.787	0					10	3	4	0	0	0	0.55359	1	6550	6550		10.824	1.4408	1	3729500	+		6832	16562	4781	4827	6639	6639					-0.07650316759213638
DQAIPERLR	9	Unmodified	_DQAIPERLR_					0	0	0			REV__ENSG00000126882|ENST00000372271|FAM78A	REV__ENSG00000126882|ENST00000372271|FAM78A	MULTI-SECPEP	A375_MHC_IP_R2	2	549.1755981445312	2	549.306729	1096.59891	-1.0818	-0.00059421	1.1945	0.00065617	0.11279	6.1958E-05	549.8076675456871	49.559	0.45546	50.316	50.096	50.551	0.75737					9	8	2	0	0	0	0.65623	1	18577	18577		25.399	10.561	1	1177400	+		6833	18404	4782	4828	6640	6640					0.05447048594805892
DQALAESSEEQ	11	Unmodified	_DQALAESSEEQ_					0	0	0		ENSG00000011426|ENST00000265748|ANLN;nc|ENSG00000011426|Q9NQW6-2|ANLN	ENSG00000011426|ENST00000265748|ANLN	ENSG00000011426|ENST00000265748|ANLN	MULTI-SECPEP	A375_MHC_IP_R2	2	604.1600952148438	2	603.759672	1205.50479	-0.70495	-0.00042562	0.98752	0.00059623	0.28257	0.0001706	603.7603561610423	61.933	0.4543	62.675	62.471	62.925	0.74263					10	8	2	0	0	0	0.9574	1	23519	23519		10.151	0.76745	1	1577800			6834	1001	4783	4829	6641	6641					-0.08974179808660665
DQALMRPTT	9	Unmodified	_DQALMRPTT_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000591367.5_1_18:21109371-21111665:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-MSMS	A375_MHC_IP_R2	2	517.6734008789062	2	516.760766	1031.50698	-1.2101	-0.00062533	0.19851	0.00010258	-1.0116	-0.00052275	517.2618252177035	52.638	1.2169	53.39	52.677	53.894	0.75225					41	23	3	0	0	0	0.41879	1	19768	19768		23.79	1.0535	1	6685200			6835	5242	4784	4830	6642	6642					-0.007513778138900307
DQALVPMHS	9	Unmodified	_DQALVPMHS_					0	0	0			REV__ENSG00000165730|ENST00000298596|STOX1	REV__ENSG00000165730|ENST00000298596|STOX1	MSMS	A375_MHC_IP_R1	1	499.1585388183594	2	499.242209	996.469866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.771	1	50.771	50.271	51.271	0								0	0	0	0.11922	1	18000	18000		36.127	2.0246	1		+		6836	20618	4785	4831	6643	6643					-0.028510493596513697
DQARELSYL	9	Unmodified	_DQARELSYL_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-SECPEP	A375_MHC_IP_R1	1	547.1895751953125	2	547.77747	1093.54039	-0.31287	-0.00017138	-0.95336	-0.00052223	-1.2662	-0.00069361	547.7766397276857	48.004	0.35352	48.004	47.768	48.122	0					10	6	2	0	0	0	0.69179	1	16861	16861		12.241	1.4167	1	1039700			6837	8133	4786	4832	6644	6644					-0.0026405277033063612
DQARELSYL	9	Unmodified	_DQARELSYL_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-MATCH	A375_MHC_IP_R2	2		2	547.77747	1093.54039	-0.59871	-0.00032796	0.79714	0.00043666	0.19843	0.00010869	547.7776595419747	47.217	0.4082	47.978	47.715	48.123	0.76128	-0.013005	0.00089747	NaN	12.241	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1115900			6838	8133	4786	4832							-0.0026405277033063612
DQARTEQLQ	9	Unmodified	_DQARTEQLQ_					0	0	0			REV__ENSG00000198933|ENST00000578982|TBKBP1	REV__ENSG00000198933|ENST00000578982|TBKBP1	MSMS	A375_MHC_IP_R2	2	544.6900634765625	2	544.770177	1087.5258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.678	1	20.288	19.788	20.788	0.61029								0	0	0	0.15069	1	6064	6064		20.454	0	1		+		6839	22452	4787	4833	6645	6645					-0.014461249184705594
DQCCWALPG	9	Unmodified	_DQCCWALPG_					0	0	0			REV__nc|ENSG00000114770|O15440-3|ABCC5	REV__nc|ENSG00000114770|O15440-3|ABCC5	MSMS	A375_MHC_IP_R1	1	496.7037658691406	2	496.701863	991.389172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.71	1	113.71	113.21	114.21	0								0	0	0	0.15486	1	41683	41683		5.2307	2.6532	1		+		6840	27183	4788	4834	6646	6646					-0.10686653674201807
DQCEENYFY	9	Unmodified	_DQCEENYFY_					0	0	0		ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	MSMS	A375_MHC_IP_R1	1	605.6356811523438	2	605.721504	1209.42845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.15	1	77.15	76.65	77.65	0								0	0	0	0.15486	1	28140	28140		7.9102	0.62092	1				6841	4722	4789	4835	6647	6647					-0.16788274909640677
DQCFGIHLF	9	Unmodified	_DQCFGIHLF_					0	0	0			REV__C6|p.S836F|3|0.38|ENSG00000039537|chr5:41149357-41149357|G/A|missense_variant	REV__C6|p.S836F|3|0.38|ENSG00000039537|chr5:41149357-41149357|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	540.184814453125	2	540.252577	1078.4906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.646	1	59.395	58.895	59.895	0.74894								0	0	0	0.1521	1	22188	22188		18.135	1.9859	1		+		6842	15545	4790	4836	6648	6648					-0.04550458979974792
DQCVCCQDC	9	Unmodified	_DQCVCCQDC_					0	0	0			REV__ENST00000508607.1_1_17:47783523-47785148:-|nuORF	REV__ENST00000508607.1_1_17:47783523-47785148:-|nuORF	MSMS	A375_MHC_IP_R2	2	508.6512756347656	2	508.650655	1015.28676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.53	1	43.302	42.802	43.802	0.7724								0	0	0	0.15486	1	15822	15822		0.6015	0	1		+		6843	25582	4791	4837	6649	6649					-0.22027430799630565
DQDCDSDSD	9	Unmodified	_DQDCDSDSD_					0	0	0			REV__ENST00000589022.1_1_19:11464267-11465550:+|nuORF	REV__ENST00000589022.1_1_19:11464267-11465550:+|nuORF	MSMS	A375_MHC_IP_R1	1	500.1391296386719	2	500.145826	998.277099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.6	1	101.6	101.1	102.1	0								0	0	0	0.15486	1	37340	37340		0.45834	0.057624	1		+		6844	21754	4792	4838	6650	6650					-0.22210881008163597
DQDDNEDSFTI	11	Unmodified	_DQDDNEDSFTI_					0	0	0			REV__nc|ENSG00000134444|Q9P260|RELCH	REV__nc|ENSG00000134444|Q9P260|RELCH	MSMS	A375_MHC_IP_R2	2	649.7646484375	2	649.754586	1297.49462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.32	1	107.08	106.58	107.58	0.75977								0	0	0	0.16203	1	40189	40189		8.1555	5.1603	1		+		6845	18780	4793	4839	6651	6651					-0.1422278753389037
DQDEEHCRKV	10	Unmodified	_DQDEEHCRKV_					0	0	0		ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	MULTI-SECPEP	A375_MHC_IP_R2	2	419.966796875	3	420.187543	1257.5408	-0.36726	-0.00015432	0.82235	0.00034554	0.45509	0.00019122	420.187981184882	23.644	0.15266	24.274	24.18	24.333	0.63014					4	2	2	0	0	0	0.93194	1	7619	7619		3.0723	1.48	1	576440			6846	4266	4794	4840	6652	6652					-0.077670011128248
DQDELDTEY	9	Unmodified	_DQDELDTEY_					0	0	0			REV__nc|ENSG00000100614|P35813-3|PPM1A	REV__nc|ENSG00000100614|P35813-3|PPM1A	MSMS	A375_MHC_IP_R2	2	564.1364135742188	2	564.222391	1126.43023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.084	1	81.829	81.329	82.329	0.74474								0	0	0	0.15486	1	30790	30790		11.64	0.81637	1		+		6847	27144	4795	4841	6653	6653					-0.1279294262003532
DQDMYSDK	8	Unmodified	_DQDMYSDK_					0	0	0		nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8;ENST00000550865.1_1_12:76784181-76788455:-|nuORF	nc|ENSG00000091039|Q9BZF1-3|OSBPL8	nc|ENSG00000091039|Q9BZF1-3|OSBPL8	MULTI-SECPEP	A375_MHC_IP_R2	2	500.474853515625	2	501.197664	1000.38078	-0.49049	-0.00024583	-0.55297	-0.00027715	-1.0435	-0.00052298	501.1970100621429	68.933	0.40647	69.669	69.423	69.83	0.73511					10	7	2	0	0	0	0.972	1	26034	26034		4.3292	0	1	610910			6848	1968	4796	4842	6654	6654					-0.11939929109826153
DQDSLQVSY	9	Unmodified	_DQDSLQVSY_					0	0	0			REV__ENSG00000187642|ENST00000433179|PERM1	REV__ENSG00000187642|ENST00000433179|PERM1	MULTI-MSMS	A375_MHC_IP_R1	1	529.69775390625	2	527.738011	1053.46147	-0.57502	-0.00030346	-0.032862	-1.7343E-05	-0.60788	-0.0003208	527.7379990635914	53.326	1.6199	53.326	52.897	54.516	0					91	31	5	0	0	0	0.60101	1	18897	18897		14.838	4.0143	1	215450000	+		6849	22036	4797	4843	6655	6655					-0.06312324795294444
DQEEAQYQRE	10	Unmodified	_DQEEAQYQRE_					0	0	0		ENST00000589493.1_1_17:40967924-40970674:-|nuORF;ENSG00000126581|ENST00000590099|BECN1	ENST00000589493.1_1_17:40967924-40970674:-|nuORF	ENST00000589493.1_1_17:40967924-40970674:-|nuORF	MSMS	A375_MHC_IP_R1	1	648.2294921875	2	648.278563	1294.54257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.843	1	32.843	32.343	33.343	0								0	0	0	0.15089	1	10651	10651		16.149	0	1				6850	4050	4798	4844	6656	6656					-0.09291668823175314
DQEEIAALF	9	Unmodified	_DQEEIAALF_					0	0	0		tr|U7T2H3|U7T2H3_FUSNUMagnesiumtransporterMgtEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00566PE=3SV=1	tr|U7T2H3|U7T2H3_FUSNUMagnesiumtransporterMgtEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00566PE=3SV=1	tr|U7T2H3|U7T2H3_FUSNUMagnesiumtransporterMgtEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00566PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	517.6627807617188	2	518.253297	1034.49204	-0.65231	-0.00033806	-0.2834	-0.00014687	-0.93571	-0.00048494	518.2530493527865	104.6	0.50999	105.36	105	105.51	0.76308					15	9	2	0	0	0	0.47368	1	39571	39571		26.884	0	1	1792700			6851	29932	4799	4845	6657	6657					-0.023825464102628757
DQENAAPF	8	Unmodified	_DQENAAPF_					0	0	0			REV__PCLO|p.R1937Q|3|0.26|ENSG00000186472|chr7:82955143-82955143|C/T|missense_variant	REV__PCLO|p.R1937Q|3|0.26|ENSG00000186472|chr7:82955143-82955143|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	891.6544799804688	1	891.384288	890.377011	-0.33972	-0.00030282	0.063045	5.6198E-05	-0.27668	-0.00024663	891.3844135988509	46.924	0.76994	46.924	46.596	47.366	0					22	14	2	0	0	0	0.77651	1	16543	16543		34.102	15.967	1	2462100	+		6852	27744	4800	4846	6658	6658					-0.0725623082138327
DQENAAPF	8	Unmodified	_DQENAAPF_					0	0	0			REV__PCLO|p.R1937Q|3|0.26|ENSG00000186472|chr7:82955143-82955143|C/T|missense_variant	REV__PCLO|p.R1937Q|3|0.26|ENSG00000186472|chr7:82955143-82955143|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		1	891.384288	890.377011	-0.36903	-0.00032894	0.10774	9.6039E-05	-0.26128	-0.0002329	891.3842142513057	46.399	0.76204	47.164	46.654	47.416	0.76518	0.12011	1.8271E-05	NaN	34.102	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2274300	+		6853	27744	4800	4846							-0.0725623082138327
DQEQEAHQQF	10	Unmodified	_DQEQEAHQQF_					0	0	0		ENSG00000130997|ENST00000511885|POLN;nc|ENSG00000130997|Q7Z5Q5-3|POLN;ENST00000515357.5_1_4:2158125-2230958:-|nuORF;ENST00000514858.5_1_4:2172840-2209821:-|nuORF	ENSG00000130997|ENST00000511885|POLN	ENSG00000130997|ENST00000511885|POLN	MULTI-MSMS	A375_MHC_IP_R2	2	630.6668090820312	2	630.267998	1258.52144	-1.2167	-0.00076685	-0.85643	-0.00053978	-2.0731	-0.0013066	630.2673842585741	24.885	0.3548	25.528	25.364	25.719	0.64368					12	6	3	0	0	0	0.63639	1	8273	8273		18.146	2.8979	1	4537100			6854	4298	4801	4847	6659	6659					-0.09747634132054372
DQEQRSQADR	10	Unmodified	_DQEQRSQADR_					0	0	0			REV__ENSG00000058453|ENST00000375541|CROCC	REV__ENSG00000058453|ENST00000375541|CROCC	MULTI-SECPEP	A375_MHC_IP_R1	1	411.6223449707031	3	411.525323	1231.55414	0.45984	0.00018924	-0.4058	-0.000167	0.054043	2.224E-05	411.8596726608994	22.688	0.60472	22.688	22.52	23.125	0					22	11	3	0	0	0	0.88038	1	6290	6290		21.799	7.3941	1	1986600	+		6855	16433	4802	4848	6660	6660					-0.052374270092059305
DQESGKAVW	9	Unmodified	_DQESGKAVW_					0	0	0		nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2	nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-SECPEP	A375_MHC_IP_R1	1	509.6473388671875	2	510.243264	1018.47197	-0.64762	-0.00033045	-0.95226	-0.00048588	-1.5999	-0.00081633	510.24266448587366	32.843	0.30476	32.843	32.684	32.989	0					7	5	2	0	0	0	0.46045	1	10669	10669		17.113	3.2068	1	945410			6856	9384	4803	4849	6661	6661					-0.03652297350186018
DQESNGSANF	10	Unmodified	_DQESNGSANF_					0	0	0		ENSG00000011258|ENST00000586178|MBTD1	ENSG00000011258|ENST00000586178|MBTD1	ENSG00000011258|ENST00000586178|MBTD1	MULTI-SECPEP	A375_MHC_IP_R2	2	534.155517578125	2	534.715067	1067.41558	-0.99787	-0.00053358	-0.071926	-3.846E-05	-1.0698	-0.00057204	534.7151275090129	66	0.3582	66.738	66.475	66.833	0.73812					11	6	2	0	0	0	0.87163	1	25014	25014		5.7319	2.1354	1	1337200			6857	995	4804	4850	6662	6662					-0.11542969977517714
DQETLIKRHKQ	11	Unmodified	_DQETLIKRHKQ_					0	0	0			REV__SAMD9|p.E34K|1|0.41|ENSG00000205413|chr7:93105998-93105998|C/T|missense_variant	REV__SAMD9|p.E34K|1|0.41|ENSG00000205413|chr7:93105998-93105998|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	698.2870483398438	2	698.388782	1394.76301	-0.66405	-0.00046376	1.8203	0.0012713	1.1562	0.00080749	698.3900186396552	95.993	0.30437	96.743	96.653	96.957	0.75045					8	5	2	0	0	0	0.99507	1	36474	36474		2.2828	0	1	1493100	+		6858	27909	4805	4851	6663	6663					0.08142021294884216
DQFQERRLA	9	Unmodified	_DQFQERRLA_					0	0	0			REV__ABCG5|p.R118Q|1|0.05|ENSG00000138075|chr2:43831996-43831996|C/T|missense_variant	REV__ABCG5|p.R118Q|1|0.05|ENSG00000138075|chr2:43831996-43831996|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	581.1668090820312	2	581.801811	1161.58907	-0.038961	-2.2667E-05	0.39921	0.00023226	0.36025	0.00020959	582.3041916330382	128.13	0.20354	128.13	128.02	128.23	0					5	3	2	0	0	0	0.76452	1	49220	49220		8.1555	4.8742	1	1691100	+		6859	15289	4806	4852	6664	6664					0.01473860589430842
DQGEDYDTPF	10	Unmodified	_DQGEDYDTPF_					0	0	0			REV__CON__P02676	REV__CON__P02676	MULTI-SECPEP	A375_MHC_IP_R1	1	594.1635131835938	2	593.730383	1185.44621	-0.38994	-0.00023152	-2.5813	-0.0015326	-2.9712	-0.0017641	594.2317576647042	77.361	0.30269	77.361	77.133	77.436	0					7	5	2	0	0	0	0.92957	1	28192	28192		3.2813	1.7994	1	637340	+	+	6860	15855	4807	4853	6665	6665					-0.13909236383142343
DQGFGLYITY	10	Unmodified	_DQGFGLYITY_					0	0	0			REV__nc|ENSG00000185507|Q92985-2|IRF7	REV__nc|ENSG00000185507|Q92985-2|IRF7	MULTI-SECPEP	A375_MHC_IP_R1	1	588.6466674804688	2	588.782222	1175.54989	-0.24282	-0.00014297	1.9097	0.0011244	1.6668	0.00098141	589.2840507086178	31.591	0.3045	31.591	31.465	31.769	0					6	5	2	0	0	0	0.91556	1	10117	10117		6.2058	0	1	709080	+		6861	21896	4808	4854	6666	6666					-0.03086284484834323
DQGFRYYFLDW	11	Unmodified	_DQGFRYYFLDW_					0	0	0			REV__ENSG00000138246|ENST00000260818|DNAJC13	REV__ENSG00000138246|ENST00000260818|DNAJC13	MSMS	A375_MHC_IP_R1	1	755.412109375	2	755.343509	1508.67246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.078	1	61.078	60.578	61.578	0								0	0	0	0.16213	1	22003	22003		7.609	2.3121	1		+		6862	19079	4809	4855	6667	6667					-0.06152447753402157
DQGISRFSVW	10	Unmodified	_DQGISRFSVW_					0	0	0		chr13:94445761-94450091|97|16.44|0.0|20.65|-|2|TE_info:MLT1A0,MLT1A0_dup16425,ERVL-MaLR,LTR,donor,+,94450091,94450302|DCT,None|4	chr13:94445761-94450091|97|16.44|0.0|20.65|-|2|TE_info:MLT1A0,MLT1A0_dup16425,ERVL-MaLR,LTR,donor,+,94450091,94450302|DCT,None|4	chr13:94445761-94450091|97|16.44|0.0|20.65|-|2|TE_info:MLT1A0,MLT1A0_dup16425,ERVL-MaLR,LTR,donor,+,94450091,94450302|DCT,None|4	MULTI-SECPEP	A375_MHC_IP_R1	1	597.4647827148438	2	597.798737	1193.58292	-0.48691	-0.00029107	0.076753	4.5883E-05	-0.41016	-0.00024519	597.7988960530629	76.853	0.56163	76.853	76.622	77.184	0					15	10	2	0	0	0	0.93594	1	28139	28139		4.897	0	1	1931200			6863	428	4810	4856	6668	6668					-0.0061265764209110785
DQGISRFSVW	10	Unmodified	_DQGISRFSVW_					0	0	0		chr13:94445761-94450091|97|16.44|0.0|20.65|-|2|TE_info:MLT1A0,MLT1A0_dup16425,ERVL-MaLR,LTR,donor,+,94450091,94450302|DCT,None|4	chr13:94445761-94450091|97|16.44|0.0|20.65|-|2|TE_info:MLT1A0,MLT1A0_dup16425,ERVL-MaLR,LTR,donor,+,94450091,94450302|DCT,None|4	chr13:94445761-94450091|97|16.44|0.0|20.65|-|2|TE_info:MLT1A0,MLT1A0_dup16425,ERVL-MaLR,LTR,donor,+,94450091,94450302|DCT,None|4	MULTI-SECPEP	A375_MHC_IP_R2	2	598.1981811523438	2	597.798737	1193.58292	-0.54149	-0.0003237	0.38622	0.00023088	-0.15527	-9.2823E-05	597.7989998054871	76.146	0.55904	76.887	76.691	77.25	0.74052					15	10	2	0	0	0	0.91909	1	28950	28950		13.906	0	1	2064500			6864	428	4810	4856	6669	6669					-0.0061265764209110785
DQGKWTGSVC	10	Unmodified	_DQGKWTGSVC_					0	0	0		ENST00000563625.1_1_16:72863630-72923726:-|nuORF	ENST00000563625.1_1_16:72863630-72923726:-|nuORF	ENST00000563625.1_1_16:72863630-72923726:-|nuORF	MSMS	A375_MHC_IP_R2	2	540.705810546875	2	540.742573	1079.47059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.63	1	101.4	100.9	101.9	0.76278								0	0	0	0.15038	1	38154	38154		17.113	4.0704	1				6865	13525	4811	4857	6670	6670					-0.0659625471059826
DQGLTKDFG	9	Unmodified	_DQGLTKDFG_					0	0	0		ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2	ENSG00000117569|ENST00000674951|PTBP2	ENSG00000117569|ENST00000674951|PTBP2	MULTI-SECPEP	A375_MHC_IP_R2	2	491.1376037597656	2	490.737814	979.461075	-0.54036	-0.00026517	-0.05869	-2.8801E-05	-0.59905	-0.00029398	490.73783564096135	48.46	0.5564	49.218	48.98	49.536	0.75737					18	10	3	0	0	0	0.46045	1	18229	18229		29.082	0	1	1970800			6866	3493	4812	4858	6671	6671					-0.029476997244614722
DQGLYYCCI	9	Unmodified	_DQGLYYCCI_					0	0	0		ENSG00000198796|ENST00000361673|ALPK2	ENSG00000198796|ENST00000361673|ALPK2	ENSG00000198796|ENST00000361673|ALPK2	MULTI-MSMS	A375_MHC_IP_R1	1	539.2138671875	2	539.222628	1076.4307	-0.59574	-0.00032124	-0.028325	-1.5273E-05	-0.62407	-0.00033651	539.2226397497274	51.113	0.30379	51.113	50.864	51.168	0					7	5	2	0	0	0	0.61998	1	18039	18039		13.906	4.5586	1	1134800			6867	9329	4813	4859	6672	6672					-0.10445517705556995
DQGVHPKV	8	Unmodified	_DQGVHPKV_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MSMS	A375_MHC_IP_R2	2	440.25701904296875	2	440.237784	878.461016	-0.4108	-0.00018085	0.021279	9.3679E-06	-0.38952	-0.00017148	440.2377150160547	32.909	0.35726	33.646	33.518	33.876	0.73692					12	6	2	0	0	0	0.77515	1	11702	11702		12.532	2.3482	1	4157500			6868	9009	4814	4860	6673	6673					0.016923450661806783
DQGVKKNCK	9	Unmodified	_DQGVKKNCK_					0	0	0		ENSG00000177483|ENST00000316997|RBM44	ENSG00000177483|ENST00000316997|RBM44	ENSG00000177483|ENST00000316997|RBM44	MSMS	A375_MHC_IP_R1	1	510.16876220703125	2	510.268758	1018.52296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.827	1	45.827	45.327	46.327	0								0	0	0	0.14851	1	16052	16052		24.021	7.8715	1				6869	8087	4815	4861	6674	6674					0.014443284230083009
DQGWLRVETY	10	Unmodified	_DQGWLRVETY_					0	0	0		ENST00000535430.1_12:122612431-122612782:+|nuORF	ENST00000535430.1_12:122612431-122612782:+|nuORF	ENST00000535430.1_12:122612431-122612782:+|nuORF	MSMS	A375_MHC_IP_R2	2	633.8218994140625	2	633.809302	1265.60405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.96	1	107.72	107.22	108.22	0.75977								0	0	0	0.15332	1	40417	40417		10.074	0	1				6870	13227	4816	4862	6675	6675					-0.018126923332374645
DQHHKAFYLM	10	Unmodified	_DQHHKAFYLM_					0	0	0			REV__ENST00000487336.1_1_7:37172686-37264491:-|nuORF	REV__ENST00000487336.1_1_7:37172686-37264491:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	644.9974975585938	2	645.308415	1288.60228	-0.77344	-0.00049911	1.7664	0.0011399	0.993	0.00064079	645.3091082250271	62.538	0.55876	63.281	62.925	63.484	0.74263					19	10	3	0	0	0	0.90853	1	23600	23600		3.5965	2.6342	1	2574000	+		6871	19941	4817	4863	6676	6676					-0.03048024622853518
DQHHPKHHH	9	Unmodified	_DQHHPKHHH_					0	0	0		ENST00000535919.1_1_11:95512769-95516347:-|nuORF;nc|ENSG00000077458|Q5HYJ3-3|FAM76B;nc|ENSG00000077458|Q5HYJ3-2|FAM76B;ENSG00000077458|ENST00000358780|FAM76B	ENST00000535919.1_1_11:95512769-95516347:-|nuORF	ENST00000535919.1_1_11:95512769-95516347:-|nuORF	MSMS	A375_MHC_IP_R1	1	586.7603149414062	2	586.776462	1171.53837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.263	1	68.263	67.763	68.763	0								0	0	0	0.1535	1	24746	24746		15.847	1.2655	1				6872	1657	4818	4864	6677	6677					-0.040536239449238565
DQHTRCTSI	9	Unmodified	_DQHTRCTSI_					0	0	0			REV__ENST00000515408.5_1_5:112312601-112321662:+|nuORF	REV__ENST00000515408.5_1_5:112312601-112321662:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	530.713134765625	2	530.745647	1059.47674	-0.65753	-0.00034898	0.16617	8.8193E-05	-0.49136	-0.00026079	530.745531835709	76.44	1.0656	76.44	75.966	77.032	0					45	20	3	0	0	0	0.60101	1	27775	27775		14.838	4.0143	1	10481000	+		6873	25662	4819	4865	6678	6678					-0.05061736479069623
DQHWECGE	8	Unmodified	_DQHWECGE_					0	0	0		ENST00000314888.9_1_9:35725635-35732201:-|nuORF	ENST00000314888.9_1_9:35725635-35732201:-|nuORF	ENST00000314888.9_1_9:35725635-35732201:-|nuORF	MSMS	A375_MHC_IP_R1	1	502.1476135253906	2	502.182349	1002.35014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.084	1	81.084	80.584	81.584	0								0	0	0	0.16876	1	29627	29627		5.2307	0	1				6874	10651	4820	4866	6679	6679					-0.1509366270421424
DQIDEPECF	9	Unmodified	_DQIDEPECF_					0	0	0			REV__ENSG00000165731|ENST00000355710|RET	REV__ENSG00000165731|ENST00000355710|RET	MULTI-MSMS	A375_MHC_IP_R2	2	549.1922607421875	2	548.218597	1094.42264	-0.84747	-0.0004646	0.69108	0.00037886	-0.1564	-8.574E-05	548.2189148799425	72.812	0.60931	73.547	73.278	73.887	0.73541					23	11	3	0	0	0	0.65721	1	27666	27666		10.824	2.9138	1	1803100	+		6875	20619	4821	4867	6680	6680					-0.12079373421306627
DQIFSTEVRG	10	Unmodified	_DQIFSTEVRG_					0	0	0		ENST00000559327.1_1_15:65676349-65688574:-|nuORF;nc|ENSG00000103742|Q8TDY8-2|IGDCC4;ENSG00000103742|ENST00000352385|IGDCC4	ENST00000559327.1_1_15:65676349-65688574:-|nuORF	ENST00000559327.1_1_15:65676349-65688574:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	575.6640014648438	2	576.288202	1150.56185	-0.14008	-8.0726E-05	-1.6953	-0.00097697	-1.8354	-0.0010577	576.787659313969	53.56	0.50858	53.56	53.301	53.809	0					13	9	2	0	0	0	0.90513	1	19135	19135		8.1555	3.2585	1	1577700			6876	2468	4822	4868	6681	6681					-0.0074066774163839
DQIGDLVLW	9	Unmodified	_DQIGDLVLW_					0	0	0			REV__MRM1|p.R157Q|1|0.34|ENSG00000278619|chr17:36602280-36602280|G/A|missense_variant	REV__MRM1|p.R157Q|1|0.34|ENSG00000278619|chr17:36602280-36602280|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	1058.0885009765625	1	1058.55169	1057.54441	-0.12503	-0.00013235	-0.28132	-0.00029779	-0.40635	-0.00043014	1058.5512945801047	133.69	0.30463	133.69	133.56	133.86	0					12	5	3	0	0	0	0.0097266	1	51547	51547		111.29	4.1	1	15128000	+		6877	22981	4823	4869	6682	6682					0.017940367233677534
DQILRGLWE	9	Unmodified	_DQILRGLWE_					0	0	0		ENST00000379619.5_1_2:28639168-28639276:+|nuORF	ENST00000379619.5_1_2:28639168-28639276:+|nuORF	ENST00000379619.5_1_2:28639168-28639276:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	565.6630249023438	2	565.303655	1128.59276	-0.31198	-0.00017637	1.0747	0.00060753	0.76271	0.00043116	565.3043686749945	56.779	0.25515	56.779	56.65	56.905	0					6	4	2	0	0	0	0.72623	1	20383	20383		19.257	0	1	652730			6878	11339	4824	4870	6683	6683					0.033605303633066796
DQINVRGAV	9	Unmodified	_DQINVRGAV_					0	0	0			REV__ENSG00000143199|ENST00000367851|ADCY10	REV__ENSG00000143199|ENST00000367851|ADCY10	MULTI-SECPEP	A375_MHC_IP_R1	1	486.15283203125	2	486.267073	970.519593	-0.067266	-3.2709E-05	0.47656	0.00023173	0.40929	0.00019903	486.2673341690286	70.315	0.51094	70.315	69.983	70.494	0					14	9	2	0	0	0	0.43707	1	25581	25581		21.747	0	1	1988800	+		6879	19340	4825	4871	6684	6684					0.03315401640657001
DQIRRGISI	9	Unmodified	_DQIRRGISI_					0	0	0			REV__tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1	REV__tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	529.1659545898438	2	529.309272	1056.60399	-0.75672	-0.00040054	-2.6509	-0.0014032	-3.4077	-0.0018037	529.8106029077203	85.03	0.30586	85.03	84.904	85.21	0					8	5	2	0	0	0	0.67483	1	31220	31220		6.2058	0	1	1081100	+		6880	28676	4826	4872	6685	6685					0.07795352457424087
DQITAPILFLR	11	Unmodified	_DQITAPILFLR_					0	0	0			REV__ENST00000559816.1_1_15:50534459-50545113:-|nuORF	REV__ENST00000559816.1_1_15:50534459-50545113:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	644.2593383789062	2	643.876988	1285.73942	-0.51661	-0.00033264	-0.4292	-0.00027635	-0.94581	-0.00060899	643.8765200372475	77.082	0.86382	77.082	76.93	77.793	0					20	16	2	0	0	0	0.99424	1	28310	28310		4.897	2.6142	1	2001200	+		6881	19199	4827	4873	6686	6686					0.10798207528364401
DQKKEVPKR	9	Unmodified	_DQKKEVPKR_					0	0	0		ENST00000493669.2_1_1:28733953-28817463:+|nuORF;nc|ENSG00000204138|Q8IZ21-3|PHACTR4;ENSG00000204138|ENST00000373839|PHACTR4;nc|ENSG00000204138|Q8IZ21-2|PHACTR4	ENST00000493669.2_1_1:28733953-28817463:+|nuORF	ENST00000493669.2_1_1:28733953-28817463:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	563.674560546875	2	564.330205	1126.64586	-0.66208	-0.00037363	-0.84377	-0.00047617	-1.5059	-0.0008498	564.3296470396054	37.816	0.40881	38.59	38.33	38.739	0.77451					11	7	2	0	0	0	0.69507	1	13820	13820		5.7319	0	1	2457900			6882	9409	4828	4874	6687	6687					0.0875990814593024
DQKQRLVRELA	11	Unmodified	_DQKQRLVRELA_					0	0	0			REV__ENSG00000275793|ENST00000619918|RIMBP3	REV__ENSG00000275793|ENST00000619918|RIMBP3	MSMS	A375_MHC_IP_R2	2	678.3917846679688	2	678.391325	1354.7681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.486	1	61.231	60.731	61.731	0.74503								0	0	0	0.16203	1	22905	22905		8.1555	0	1		+		6883	21741	4829	4875	6688	6688					0.10490325157502411
DQKTKQLL	8	Unmodified	_DQKTKQLL_					0	0	0			REV__ENST00000473039.5_1_9:126143713-126520026:-|nuORF	REV__ENST00000473039.5_1_9:126143713-126520026:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	487.6402893066406	2	487.287474	972.560395	0.10362	5.0494E-05	-0.010681	-5.2047E-06	0.092942	4.5289E-05	487.28724731135156	48.401	0.45581	48.401	48.173	48.629	0					14	8	2	0	0	0	0.69122	1	17026	17026		39.957	10.876	1	2933500	+		6884	18075	4830	4876	6689	6689					0.0730174296027144
DQLCCLYL	8	Unmodified	_DQLCCLYL_					0	0	0			REV__ENST00000359895.6_1_5:176910979-176915099:-|nuORF	REV__ENST00000359895.6_1_5:176910979-176915099:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	487.1607971191406	2	485.722264	969.429975	0.19967	9.6986E-05	-0.62966	-0.00030584	-0.42999	-0.00020885	485.7220477227906	69.737	1.3216	69.737	69.07	70.392	0					64	25	4	0	0	0	0.77515	1	25391	25391		12.532	0	1	21512000	+		6885	23884	4831	4877	6690	6690					-0.05596312354600741
DQLCCLYL	8	Unmodified	_DQLCCLYL_					0	0	0			REV__ENST00000359895.6_1_5:176910979-176915099:-|nuORF	REV__ENST00000359895.6_1_5:176910979-176915099:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	487.16070556640625	2	485.722264	969.429975	-0.49814	-0.00024196	-0.53782	-0.00026123	-1.036	-0.00050319	485.7221309915913	68.902	1.2149	69.637	69.07	70.285	0.73511					62	23	4	0	0	0	0.7338	1	26019	26019		24.674	0	1	20430000	+		6886	23884	4831	4877	6691	6691					-0.05596312354600741
DQLCLEKI	8	Unmodified	_DQLCLEKI_					0	0	0			REV__ENST00000498589.1_3_22:22015281-22024373:+|nuORF	REV__ENST00000498589.1_3_22:22015281-22024373:+|nuORF	MSMS	A375_MHC_IP_R1	1	481.16064453125	2	481.254785	960.495018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.973	1	80.973	80.473	81.473	0								0	0	0	0.16756	1	29587	29587		42.095	6.0504	1		+		6887	25463	4832	4878	6692	6692					0.01319005442917387
DQLCSSHESS	10	Unmodified	_DQLCSSHESS_					0	0	0			REV__ENSG00000186026|ENST00000421176|ZNF284	REV__ENSG00000186026|ENST00000421176|ZNF284	MSMS	A375_MHC_IP_R2	2	546.677001953125	2	546.716753	1091.41895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.28	1	97.03	96.53	97.53	0.75045								0	0	0	0.15491	1	36558	36558		4.897	0.141	1		+		6888	21940	4833	4879	6693	6693					-0.1231004319515705
DQLEPDDVR	9	Unmodified	_DQLEPDDVR_					0	0	0			REV__nc|ENSG00000135439|Q99490-2|AGAP2	REV__nc|ENSG00000135439|Q99490-2|AGAP2	MULTI-MSMS	A375_MHC_IP_R2	2	544.199951171875	2	543.756735	1085.49892	-1.2246	-0.00066588	1.3878	0.0007546	0.16316	8.8719E-05	543.757228774472	56.614	0.66128	57.364	57.051	57.712	0.75014					16	12	2	0	0	0	0.19747	1	21397	21397		38.176	2.0485	1	1456500	+		6889	27241	4834	4880	6694	6694					-0.04041233529665078
DQLEQQLRHYE	11	Unmodified	_DQLEQQLRHYE_					0	0	0			REV__JAKMIP2|p.N567Y|1|0.46|ENSG00000176049|chr5:147632757-147632757|T/A|missense_variant	REV__JAKMIP2|p.N567Y|1|0.46|ENSG00000176049|chr5:147632757-147632757|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	730.2511596679688	2	729.852229	1457.68991	-0.86141	-0.0006287	-0.52938	-0.00038637	-1.3908	-0.0010151	729.8517537139169	137.1	0.46449	137.1	136.92	137.39	0					26	8	4	0	0	0	0.71476	1	52771	52771		14.405	6.2499	1	25339000	+		6890	26813	4835	4881	6695	6695					-0.020631522183975903
DQLGFNYD	8	Unmodified	_DQLGFNYD_					0	0	0			REV__MCTP1|p.D332N|1|0.38|ENSG00000175471|chr5:94942415-94942415|C/T|missense_variant	REV__MCTP1|p.D332N|1|0.38|ENSG00000175471|chr5:94942415-94942415|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	486.12200927734375	2	486.208889	970.403226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.37	1	69.37	68.87	69.87	0								0	0	0	0.16876	1	25171	25171		18.135	0	1		+		6891	26995	4836	4882	6696	6696					-0.08315961649907422
DQLIEPKLQ	9	Unmodified	_DQLIEPKLQ_					0	0	0			REV__nc|ENSG00000151148|Q7Z3V4-3|UBE3B	REV__nc|ENSG00000151148|Q7Z3V4-3|UBE3B	MULTI-SECPEP	A375_MHC_IP_R1	1	542.1516723632812	2	542.305864	1082.59717	-0.38086	-0.00020655	0.71771	0.00038922	0.33684	0.00018267	542.3062599331208	35.784	0.40965	35.784	35.472	35.881	0					12	7	2	0	0	0	0.58271	1	11912	11912		14.838	3.3436	1	1799500	+		6892	19740	4837	4883	6697	6697					0.05917994786182135
DQLIEPKLQ	9	Unmodified	_DQLIEPKLQ_					0	0	0			REV__nc|ENSG00000151148|Q7Z3V4-3|UBE3B	REV__nc|ENSG00000151148|Q7Z3V4-3|UBE3B	MULTI-MATCH	A375_MHC_IP_R2	2		2	542.305864	1082.59717	-1.0303	-0.00055876	1.3543	0.00073446	0.32398	0.00017569	542.3065768163599	34.816	0.3524	35.579	35.375	35.727	0.76338	-0.10248	0.00033071	NaN	14.838	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1819200	+		6893	19740	4837	4883							0.05917994786182135
DQLKKSIIG	9	Unmodified	_DQLKKSIIG_					0	0	0		nc|ENSG00000257335|O43451-1|MGAM;ENSG00000257335|ENST00000475668|MGAM	nc|ENSG00000257335|O43451-1|MGAM	nc|ENSG00000257335|O43451-1|MGAM	MSMS	A375_MHC_IP_R1	1	501.4761962890625	2	501.303124	1000.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.805	1	80.805	80.305	81.305	0								0	0	0	0.15142	1	29522	29522		19.257	3.4098	1				6894	9908	4838	4884	6698	6698					0.09142315994381534
DQLKQYEP	8	Unmodified	_DQLKQYEP_					0	0	0			REV__ENST00000494017.5_1_2:202591977-202598136:-|nuORF	REV__ENST00000494017.5_1_2:202591977-202598136:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	510.642822265625	2	510.753464	1019.49238	-0.3731	-0.00019056	0.87785	0.00044836	0.50475	0.0002578	510.7537408560639	35.09	0.408	35.09	34.861	35.269	0					12	7	2	0	0	0	0.81376	1	11636	11636		32.305	6.9062	1	2565200	+		6895	16092	4839	4885	6699	6699					-0.01659126690390167
DQLKQYEP	8	Unmodified	_DQLKQYEP_					0	0	0			REV__ENST00000494017.5_1_2:202591977-202598136:-|nuORF	REV__ENST00000494017.5_1_2:202591977-202598136:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	510.753464	1019.49238	-1.0043	-0.00051296	1.3195	0.00067394	0.31518	0.00016098	510.754169396678	34.37	0.50839	35.122	35.006	35.514	0.75225	0.016011	0.00014285	NaN	32.305	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1990500	+		6896	16092	4839	4885							-0.01659126690390167
DQLKVQSQQY	10	Unmodified	_DQLKVQSQQY_					0	0	0			REV__nc|ENSG00000034533|Q2TB18-2|ASTE1	REV__nc|ENSG00000034533|Q2TB18-2|ASTE1	MULTI-MSMS	A375_MHC_IP_R1	1	618.7163696289062	2	618.814584	1235.61462	-0.49759	-0.00030792	-0.29251	-0.00018101	-0.7901	-0.00048893	619.3156130026367	53.179	0.30391	53.179	52.997	53.301	0					8	5	2	0	0	0	0.64017	1	18881	18881		26.268	9.1552	1	886130	+		6897	16312	4840	4886	6700	6700					0.006232903212094243
DQLLPIDRV	9	Unmodified	_DQLLPIDRV_					0	0	0			REV__ENST00000529267.2_1_14:70712472-70713909:-|nuORF	REV__ENST00000529267.2_1_14:70712472-70713909:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	535.2064208984375	2	534.806031	1067.59751	-0.69406	-0.00037119	0.64354	0.00034417	-0.050528	-2.7023E-05	534.8063211920852	93.34	0.61017	94.079	93.746	94.356	0.73902					24	11	3	0	0	0	0.41434	1	35436	35436		39.95	3.8227	1	5948300	+		6898	19188	4841	4887	6701	6701					0.06641414506043475
DQLNNEQDEQ	10	Unmodified	_DQLNNEQDEQ_					0	0	0			REV__PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant	REV__PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	616.4935302734375	2	616.754921	1231.49529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.981	1	80.725	80.225	81.225	0.74474								0	0	0	0.15391	1	30361	30361		8.1555	1.4324	1		+		6899	27774	4842	4888	6702	6702					-0.11119948094187748
DQLPGLTKE	9	Unmodified	_DQLPGLTKE_					0	0	0			REV__ENST00000494668.1_3_3:150932100-150979209:-|nuORF	REV__ENST00000494668.1_3_3:150932100-150979209:-|nuORF	MSMS	A375_MHC_IP_R2	2	500.6589660644531	2	500.769114	999.523675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.424	1	48.185	47.685	48.685	0.76128								0	0	0	0.15468	1	17782	17782		13.906	0	1		+		6900	25438	4843	4889	6703	6703					0.0238944634369318
DQLPQKNLL	9	Unmodified	_DQLPQKNLL_					0	0	0		ENSG00000124143|ENST00000373345|ARHGAP40	ENSG00000124143|ENST00000373345|ARHGAP40	ENSG00000124143|ENST00000373345|ARHGAP40	MULTI-MSMS	A375_MHC_IP_R1	1	535.4366455078125	2	534.806031	1067.59751	-0.75215	-0.00040225	-0.017977	-9.614E-06	-0.77012	-0.00041187	534.8059996959529	94.166	0.60708	94.166	93.89	94.497	0					27	11	3	0	0	0	0.70902	1	34692	34692		9.3831	0	1	6457900			6901	3872	4844	4890	6704	6704					0.06641414506043475
DQLQKLLADLH	11	Unmodified	_DQLQKLLADLH_					0	0	0		nc|ENSG00000163749|Q5M9N0|CCDC158;ENSG00000163749|ENST00000682701|CCDC158	nc|ENSG00000163749|Q5M9N0|CCDC158	nc|ENSG00000163749|Q5M9N0|CCDC158	MULTI-MSMS	A375_MHC_IP_R1	1	431.92633056640625	3	431.910227	1292.70885	-0.32614	-0.00014086	0.79177	0.00034197	0.46563	0.00020111	432.2447208289322	27.114	0.50255	27.114	26.828	27.331	0					19	9	3	0	0	0	0.73658	1	8245	8245		2.6312	0.37851	1	2948600			6902	6714	4845	4891	6705	6705					0.07420429143326146
DQLRAIIEA	9	Unmodified	_DQLRAIIEA_					0	0	0		ENST00000425046.1_1_3:4345037-4358927:+|nuORF;nc|ENSG00000170364|Q53H47-3|SETMAR;ENSG00000170364|ENST00000358065|SETMAR	ENST00000425046.1_1_3:4345037-4358927:+|nuORF	ENST00000425046.1_1_3:4345037-4358927:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	515.1900024414062	2	514.790381	1027.56621	-0.41439	-0.00021332	0.13429	6.913E-05	-0.2801	-0.00014419	514.790265102794	56.615	1.0161	56.615	56.143	57.159	0					41	19	4	0	0	0	0.33896	1	20253	20253		40.239	7.4535	1	7746900			6903	7498	4846	4892	6706	6706					0.05352841471949432
DQLRRKVPTF	10	Unmodified	_DQLRRKVPTF_					0	0	0		ENSG00000146618|ENST00000275461|FERD3L	ENSG00000146618|ENST00000275461|FERD3L	ENSG00000146618|ENST00000275461|FERD3L	MULTI-SECPEP	A375_MHC_IP_R1	1	630.7469482421875	2	630.364579	1258.7146	-0.60968	-0.00038432	-1.6066	-0.0010127	-2.2163	-0.0013971	630.3638412997916	83.281	1.3669	83.281	82.571	83.937	0					47	26	2	0	0	0	0.8528	1	30670	30670		11.495	0	1	3871800			6904	5629	4847	4893	6707	6707					0.09559572445641606
DQLRSHAY	8	Unmodified	_DQLRSHAY_					0	0	0			REV__KCNT2|p.P325S|1|0.51|ENSG00000162687|chr1:196428116-196428116|G/A|missense_variant	REV__KCNT2|p.P325S|1|0.51|ENSG00000162687|chr1:196428116-196428116|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	495.1585693359375	2	495.243598	988.472643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.751	1	70.751	70.251	71.251	0								0	0	0	0.16876	1	25692	25692		34.102	5.6156	1		+		6905	26833	4848	4894	6708	6708					-0.02205457910486075
DQLSRPYY	8	Unmodified	_DQLSRPYY_					0	0	0			REV__ENSG00000271447|ENST00000605424|MMP28	REV__ENSG00000271447|ENST00000605424|MMP28	MULTI-MSMS	A375_MHC_IP_R1	1	521.6712646484375	2	521.253631	1040.49271	-0.64224	-0.00033477	-0.32096	-0.0001673	-0.9632	-0.00050207	521.253680945235	80.779	0.45755	80.779	80.592	81.049	0					13	8	2	0	0	0	0.77562	1	29535	29535		10.824	2.9138	1	1178700	+		6906	22945	4849	4895	6709	6709					-0.025917069705201357
DQLSRPYY	8	Unmodified	_DQLSRPYY_					0	0	0			REV__ENSG00000271447|ENST00000605424|MMP28	REV__ENSG00000271447|ENST00000605424|MMP28	MULTI-MSMS	A375_MHC_IP_R2	2	521.6708984375	2	521.253631	1040.49271	-0.58829	-0.00030665	-1.7228	-0.00089803	-2.3111	-0.0012047	521.2529782786224	80.027	0.40405	80.772	80.556	80.961	0.74474					11	7	2	0	0	0	0.77602	1	30368	30368		9.3831	2.66	1	965170	+		6907	22945	4849	4895	6710	6710					-0.025917069705201357
DQLSRPYY	8	Unmodified	_DQLSRPYY_					0	0	0			REV__ENSG00000271447|ENST00000605424|MMP28	REV__ENSG00000271447|ENST00000605424|MMP28	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	521.253631	1040.49271	-0.58829	-0.00030665	-1.7228	-0.00089803	-2.3111	-0.0012047	521.2529782786224	80.027	0.40405	80.772	80.556	80.961	0.74474	-0.0033901	-0.00098956	NaN	10.824	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	965170	+		6908	22945	4849	4895							-0.025917069705201357
DQLWEAEL	8	Unmodified	_DQLWEAEL_					0	0	0			REV__nc|ENSG00000088756|Q9P2N2-2|ARHGAP28	REV__nc|ENSG00000088756|Q9P2N2-2|ARHGAP28	MSMS	A375_MHC_IP_R1	1	502.1480407714844	2	502.24019	1002.46583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.77	1	80.77	80.27	81.27	0								0	0	0	0.16876	1	29509	29509		36.044	6.9626	1		+		6909	16888	4850	4896	6711	6711					-0.03530815581734714
DQLWKTFI	8	Unmodified	_DQLWKTFI_					0	0	0			REV__ENST00000554084.5_1_14:100819360-100828234:-|nuORF	REV__ENST00000554084.5_1_14:100819360-100828234:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	526.185791015625	2	525.784567	1049.55458	-0.41371	-0.00021752	-0.67019	-0.00035237	-1.0839	-0.0005699	525.7828070119106	63.412	1.3722	64.152	63.582	64.954	0.74022					51	26	4	0	0	0	0.689	1	24038	24038		38.176	1.6694	1	6294900	+		6910	19194	4851	4897	6712	6712					0.031786444485987886
DQLYTWAAV	9	Unmodified	_DQLYTWAAV_					0	0	0		ENSG00000155816|ENST00000319653|FMN2	ENSG00000155816|ENST00000319653|FMN2	ENSG00000155816|ENST00000319653|FMN2	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1817626953125	2	533.763832	1065.51311	-0.72901	-0.00038912	0.64391	0.0003437	-0.085098	-4.5422E-05	533.7639581855482	73.293	1.0177	74.029	73.379	74.396	0.73541					35	19	3	0	0	0	0.47368	1	27761	27761		10.074	0.6908	1	3384300			6911	6156	4852	4898	6713	6713					-0.017025363107450175
DQNAQTRW	8	Unmodified	_DQNAQTRW_					0	0	0		nc|ENSG00000198556|Q5FWF6-2|ZNF789;ENSG00000198556|ENST00000331410|ZNF789	nc|ENSG00000198556|Q5FWF6-2|ZNF789	nc|ENSG00000198556|Q5FWF6-2|ZNF789	MULTI-SECPEP	A375_MHC_IP_R2	2	509.6770935058594	2	509.73868	1017.46281	-0.97377	-0.00049637	-0.13236	-6.7468E-05	-1.1061	-0.00056384	509.73799262897387	35.163	0.40372	35.926	35.677	36.081	0.76338					12	7	2	0	0	0	0.972	1	12799	12799		4.3292	0	1	1460700			6912	9282	4853	4899	6714	6714					-0.045226459158584476
DQNEKKSF	8	Unmodified	_DQNEKKSF_					0	0	0			REV__tr|U7T3H1|U7T3H1_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00276PE=3SV=1	REV__tr|U7T3H1|U7T3H1_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00276PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	498.66094970703125	2	498.243264	994.471974	-0.53262	-0.00026537	-0.044845	-2.2344E-05	-0.57746	-0.00028772	498.24317122529453	30.589	0.45468	31.308	30.962	31.417	0.71857					12	8	2	0	0	0	0.92636	1	10781	10781		16.942	10.737	1	850290	+		6913	28772	4854	4900	6715	6715					-0.025482973501880224
DQNIEYEY	8	Unmodified	_DQNIEYEY_					0	0	0		ENSG00000196757|ENST00000254321|ZNF700;ENSG00000197054|ENST00000358987|ZNF763;nc|ENSG00000197054|Q0D2J5-2|ZNF763;nc|ENSG00000198429|Q9UC07-2|ZNF69;nc|ENSG00000171291|Q8NDP4|ZNF439;ENSG00000171291|ENST00000682736|ZNF439;ENSG00000198429|ENST00000429654|ZNF69	ENSG00000196757|ENST00000254321|ZNF700;nc|ENSG00000171291|Q8NDP4|ZNF439	ENSG00000196757|ENST00000254321|ZNF700	MULTI-SECPEP	A375_MHC_IP_R2	2	537.6766357421875	2	537.224736	1072.43492	-0.91748	-0.00049289	0.066525	3.5739E-05	-0.85095	-0.00045715	537.2246074196179	39.846	0.35535	40.621	40.473	40.828	0.77451					10	6	2	0	0	0	0.95423	1	14688	14688		7.9102	2.6795	1	1115500			6914	9081;7590	4855	4901	6716	6716					-0.09840013686607563
DQNIKNSF	8	Unmodified	_DQNIKNSF_					0	0	0		ENST00000425869.1_22:16634899-16650863:+|nuORF	ENST00000425869.1_22:16634899-16650863:+|nuORF	ENST00000425869.1_22:16634899-16650863:+|nuORF	MSMS	A375_MHC_IP_R1	1	483.1587219238281	2	483.237981	964.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.263	1	42.263	41.763	42.763	0								0	0	0	0.16876	1	14637	14637		26.341	0	1				6915	11796	4856	4902	6717	6717					-0.022242800046228695
DQNIYEFSDQ	10	Unmodified	_DQNIYEFSDQ_					0	0	0			REV__nc|ENSG00000052795|Q9P278-2|FNIP2	REV__nc|ENSG00000052795|Q9P278-2|FNIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	629.1929321289062	2	629.764757	1257.51496	-1.0708	-0.00067436	0.43779	0.0002757	-0.63302	-0.00039866	629.7649723822607	41.045	0.55891	41.819	41.59	42.149	0.77451					16	10	2	0	0	0	0.81532	1	15251	15251		10.151	3.4274	1	2868800	+		6916	16393	4857	4903	6718	6718					-0.10349572083396197
DQNNAKPYW	9	Unmodified	_DQNNAKPYW_					0	0	0			REV__nc|ENSG00000119703|Q53FD0-2|ZC2HC1C	REV__nc|ENSG00000119703|Q53FD0-2|ZC2HC1C	MULTI-SECPEP	A375_MHC_IP_R1	1	568.6620483398438	2	568.261988	1134.50942	-0.30223	-0.00017174	0.59684	0.00033916	0.29461	0.00016742	568.2621300342192	103.06	0.71216	103.06	102.76	103.47	0					22	13	2	0	0	0	0.78348	1	37898	37898		4.3292	2.485	1	997920	+		6917	18088	4858	4904	6719	6719					-0.05245206084578058
DQNNYHYL	8	Unmodified	_DQNNYHYL_					0	0	0			REV__ENSG00000135966|ENST00000393359|TGFBRAP1	REV__ENSG00000135966|ENST00000393359|TGFBRAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	534.186767578125	2	533.733063	1065.45157	-0.70817	-0.00037798	0.83257	0.00044437	0.1244	6.6396E-05	534.2345056966129	105.05	0.20278	105.82	105.67	105.87	0.76308					5	3	2	0	0	0	0.95423	1	39697	39697		7.9102	0	1	2239800	+		6918	18904	4859	4905	6720	6720					-0.07853468010011966
DQNRRHRF	8	Unmodified	_DQNRRHRF_					0	0	0			REV__nc|ENSG00000139624|Q8N5B7-2|CERS5	REV__nc|ENSG00000139624|Q8N5B7-2|CERS5	MULTI-SECPEP	A375_MHC_IP_R2	2	565.1423950195312	2	564.792112	1127.56967	-0.55496	-0.00031344	-0.87413	-0.0004937	-1.4291	-0.00080714	564.7914094794913	55.41	0.55809	56.161	55.881	56.439	0.75075					15	10	2	0	0	0	0.94479	1	21016	21016		8.5933	8.5933	1	2487000	+		6919	19167	4860	4906	6721	6721					0.010989490891688547
DQNYDIRDWA	10	Unmodified	_DQNYDIRDWA_					0	0	0		AP3B2|p.R578W|1|0.31|ENSG00000103723|chr15:82666867-82666867|G/A|missense_variant	AP3B2|p.R578W|1|0.31|ENSG00000103723|chr15:82666867-82666867|G/A|missense_variant	AP3B2|p.R578W|1|0.31|ENSG00000103723|chr15:82666867-82666867|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	648.20263671875	2	648.286191	1294.55783	-0.23803	-0.00015431	-1.4989	-0.00097171	-1.7369	-0.001126	648.285638891588	52.111	0.55812	52.111	51.829	52.387	0					15	10	2	0	0	0	0.69306	1	18616	18616		13.906	0.86358	1	1674500			6920	155	4861	4907	6722	6722					-0.07766757235322075
DQPDFYYEYYP	11	Unmodified	_DQPDFYYEYYP_					0	0	0		TRAPPC12|p.L459F|1|0.2|ENSG00000171853|chr2:3424621-3424621|C/T|missense_variant	TRAPPC12|p.L459F|1|0.2|ENSG00000171853|chr2:3424621-3424621|C/T|missense_variant	TRAPPC12|p.L459F|1|0.2|ENSG00000171853|chr2:3424621-3424621|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	500.4747619628906	3	500.538236	1498.59288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.514	1	88.246	87.746	88.746	0.7318								0	0	0	0.16265	1	33284	33284		2.2527	1.0379	1				6921	30071	4862	4908	6723	6723					-0.1364755921804317
DQPLESKRRLL	11	Unmodified	_DQPLESKRRLL_					0	0	0			REV__nc|ENSG00000112640|Q14738-3|PPP2R5D	REV__nc|ENSG00000112640|Q14738-3|PPP2R5D	MSMS	A375_MHC_IP_R1	1	678.2028198242188	2	677.8937	1353.77285	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.066	1	68.066	67.566	68.566	0								0	0	0	0.16312	1	24672	24672		2.4985	0	1		+		6922	17742	4863	4909	6724	6724					0.1101120930027264
DQPPKDSPL	9	Unmodified	_DQPPKDSPL_					0	0	0		nc|ENSG00000168918|Q92835-3|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D	nc|ENSG00000168918|Q92835-3|INPP5D	nc|ENSG00000168918|Q92835-3|INPP5D	MULTI-SECPEP	A375_MHC_IP_R2	2	499.4601135253906	2	498.753464	995.492375	-0.70763	-0.00035293	-0.85662	-0.00042724	-1.5643	-0.00078018	498.75316123177873	51.351	0.45654	52.104	51.864	52.321	0.75225					11	8	2	0	0	0	0.73363	1	19405	19405		6.7232	0.51738	1	636410			6923	7360	4864	4910	6725	6725					-0.0055512669038080276
DQPQQLERL	9	Unmodified	_DQPQQLERL_					0	0	0			REV__CON__Q9N2I2	REV__CON__Q9N2I2	MULTI-MSMS	A375_MHC_IP_R2	2	376.6002197265625	3	376.199889	1125.57784	0.2959	0.00011132	0.73935	0.00027814	1.0353	0.00038946	376.2000711292463	27.491	0.81182	28.169	27.996	28.808	0.67857					23	15	3	0	0	0	0.66474	1	9435	9435		10.151	1.995	1	5047500	+	+	6924	15901	4865	4911	6726	6726					0.020070384952759923
DQQAKGRMQY	10	Unmodified	_DQQAKGRMQY_					0	0	0		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-SECPEP	A375_MHC_IP_R2	2	612.4588012695312	2	612.793129	1223.5717	-0.80702	-0.00049454	-1.4766	-0.00090486	-2.2836	-0.0013994	612.7913782415836	49.359	0.65756	50.117	49.843	50.5	0.75737					24	12	3	0	0	0	0.88918	1	18621	18621		13.042	3.6593	1	4236600			6925	3563	4866	4912	6727	6727					-0.031138030078636803
DQQRQYYVWCH	11	Unmodified	_DQQRQYYVWCH_					0	0	0			REV__ENST00000433818.6_1_11:77629258-77692594:-|nuORF	REV__ENST00000433818.6_1_11:77629258-77692594:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	509.1247863769531	3	509.22622	1524.65683	-0.45272	-0.00023054	0.041871	2.1322E-05	-0.41085	-0.00020922	509.2263678051999	24.893	0.45517	24.893	24.749	25.204	0					9	8	2	0	0	0	0.73807	1	7164	7164		1.2148	0	1	6619800	+		6926	24735	4867	4913	6728	6728					-0.08451057542083618
DQQWRKQQEQF	11	Unmodified	_DQQWRKQQEQF_					0	0	0			REV__ENSG00000187268|ENST00000380625|FAM9C	REV__ENSG00000187268|ENST00000380625|FAM9C	MSMS	A375_MHC_IP_R1	1	507.54290771484375	3	507.57954	1519.71679	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.082	1	82.082	81.582	82.582	0								0	0	0	0.16309	1	30006	30006		2.6312	0.37851	1		+		6927	22018	4868	4914	6729	6729					-0.022280436072151133
DQRFSSMFS	9	Unmodified	_DQRFSSMFS_					0	0	0			REV__nc|ENSG00000148735|Q5SXH7-4|PLEKHS1	REV__nc|ENSG00000148735|Q5SXH7-4|PLEKHS1	MSMS	A375_MHC_IP_R2	2	552.7444458007812	2	552.742573	1103.47059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.277	1	70.011	69.511	70.511	0.73421								0	0	0	0.15411	1	26253	26253		14.838	4.0143	1		+		6928	19647	4869	4915	6730	6730					-0.07700254710584886
DQRGDDQCLGH	11	Unmodified	_DQRGDDQCLGH_					0	0	0		ENST00000451680.1_1_3:50684246-50685398:+|nuORF	ENST00000451680.1_1_3:50684246-50685398:+|nuORF	ENST00000451680.1_1_3:50684246-50685398:+|nuORF	MSMS	A375_MHC_IP_R2	2	622.1572875976562	2	622.25965	1242.50475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.829	1	75.567	75.067	76.067	0.73752								0	0	0	0.15016	1	28402	28402		20.415	10.341	1				6929	12076	4870	4916	6731	6731					-0.10680458289652961
DQRHWRPWRPD	11	Unmodified	_DQRHWRPWRPD_					0	0	0		ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	MSMS	A375_MHC_IP_R1	1	774.6806640625	2	774.88199	1547.74943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.83	1	102.83	102.33	103.33	0								0	0	0	0.16337	1	37790	37790		1.1933	0	1				6930	3616	4871	4917	6732	6732					-0.0025379169369443844
DQRIAIDLFKH	11	Unmodified	_DQRIAIDLFKH_					0	0	0		ENSG00000099937|ENST00000215727|SERPIND1	ENSG00000099937|ENST00000215727|SERPIND1	ENSG00000099937|ENST00000215727|SERPIND1	MULTI-MSMS	A375_MHC_IP_R1	1	678.7770385742188	2	678.375143	1354.73573	-0.38618	-0.00026198	1.54	0.0010447	1.1538	0.0007827	678.3767518323924	107.77	0.25419	107.77	107.6	107.85	0					5	4	2	0	0	0	0.73284	1	39567	39567		6.1918	0.89496	1	1879000			6931	2094	4872	4918	6733	6733					0.07255537754485886
DQRKLNKV	8	Unmodified	_DQRKLNKV_					0	0	0			REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	MULTI-SECPEP	A375_MHC_IP_R1	1	501.1982116699219	2	500.79854	999.582528	-0.62417	-0.00031258	0.012731	6.3757E-06	-0.61144	-0.00030621	500.7985105762512	23.962	0.25364	23.962	23.838	24.092	0					9	4	3	0	0	0	0.90057	1	6711	6711		22.736	3.4793	1	8465700	+		6932	22535	4873	4919	6734	6734					0.08271967428697735
DQRVSGLAPP	10	Unmodified	_DQRVSGLAPP_					0	0	0			REV__ENST00000373913.7_1_20:35156076-35156352:+|nuORF	REV__ENST00000373913.7_1_20:35156076-35156352:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	520.4378051757812	2	520.28018	1038.54581	-0.72489	-0.00037715	-2.2069	-0.0011482	-2.9318	-0.0015254	520.2788595498265	24.186	0.40553	24.186	24.042	24.447	0					10	7	2	0	0	0	0.94598	1	6916	6916		0.30703	0.03801	1	4359800	+		6933	24101	4874	4920	6735	6735					0.02807670812148899
DQSANYNY	8	Unmodified	_DQSANYNY_					0	0	0			REV__ENSG00000147459|ENST00000276440|DOCK5	REV__ENSG00000147459|ENST00000276440|DOCK5	MULTI-SECPEP	A375_MHC_IP_R2	2	487.160888671875	2	487.696146	973.377739	-0.71212	-0.0003473	-0.30906	-0.00015073	-1.0212	-0.00049802	487.6958333487435	71.018	0.40588	71.753	71.553	71.959	0.73421					11	7	2	0	0	0	0.972	1	26900	26900		9.3474	0	1	2441700	+		6934	19589	4875	4921	6736	6736					-0.11001436172341528
DQSELRSIY	9	Unmodified	_DQSELRSIY_					0	0	0		nc|ENSG00000196104|Q9BQ16-9|SPOCK3;nc|ENSG00000196104|Q9BQ16-7|SPOCK3;nc|ENSG00000196104|Q9BQ16-2|SPOCK3;nc|ENSG00000196104|Q9BQ16-5|SPOCK3;nc|ENSG00000196104|Q9BQ16-6|SPOCK3;nc|ENSG00000196104|Q9BQ16-4|SPOCK3;nc|ENSG00000196104|Q9BQ16-8|SPOCK3;ENSG00000196104|ENST00000357545|SPOCK3;nc|ENSG00000196104|Q9BQ16|SPOCK3	nc|ENSG00000196104|Q9BQ16-9|SPOCK3	nc|ENSG00000196104|Q9BQ16-9|SPOCK3	MULTI-SECPEP	A375_MHC_IP_R1	1	555.169189453125	2	555.774928	1109.5353	-0.75764	-0.00042108	-0.65537	-0.00036424	-1.413	-0.00078532	555.7744086850697	85.003	0.76472	85.003	84.697	85.462	0					43	14	5	0	0	0	0.41434	1	31067	31067		32.786	21.986	1	12589000			6935	8996	4876	4922	6737	6737					-0.015083566329394671
DQSEWMKQL	9	Unmodified	_DQSEWMKQL_					0	0	0			REV__ENSG00000196476|ENST00000360321|C20orf96	REV__ENSG00000196476|ENST00000360321|C20orf96	MULTI-MSMS	A375_MHC_IP_R1	1	582.6883544921875	2	582.771331	1163.52811	0.02975	1.7337E-05	0.14639	8.5314E-05	0.17614	0.00010265	582.771342922444	38.897	1.1685	38.897	38.475	39.643	0					36	22	2	0	0	0	0.46465	1	13381	13381		21.537	1.1224	1	2978400	+		6936	22200	4877	4923	6738	6738					-0.047114125050256916
DQSILFSKW	9	Unmodified	_DQSILFSKW_					0	0	0			REV__ENST00000258173.10_1_16:75574046-75575281:-|nuORF	REV__ENST00000258173.10_1_16:75574046-75575281:-|nuORF	MSMS	A375_MHC_IP_R2	2	375.2574768066406	3	375.197596	1122.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.188	1	46.953	46.453	47.453	0.76519								0	0	0	0.15069	1	17291	17291		14.405	0.79051	1		+		6937	23167	4878	4924	6739	6739					0.014577256147049411
DQSISNMQY	9	Unmodified	_DQSISNMQY_					0	0	0			REV__tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1	REV__tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	543.6314697265625	2	543.232039	1084.44952	-0.6046	-0.00032844	-0.24751	-0.00013445	-0.8521	-0.00046289	543.2320489100957	95.273	0.5621	96.023	95.785	96.347	0.75045					17	10	2	0	0	0	0.64136	1	36242	36242		12.241	1.4167	1	1071500	+		6938	28831	4879	4925	6740	6740					-0.08932264810118795
DQSISNMQY	9	Unmodified	_DQSISNMQY_					0	0	0			REV__tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1	REV__tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	543.232039	1084.44952	-0.60005	-0.00032597	-0.070931	-3.8532E-05	-0.67098	-0.0003645	543.2319539907104	95.983	0.55788	95.983	95.767	96.325	0	-0.020219	5.8558E-05	NaN	12.241	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1396600	+		6939	28831	4879	4925							-0.08932264810118795
DQSISNMQY	9	Unmodified	_DQSISNMQY_					0	0	0			REV__tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1	REV__tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	543.232039	1084.44952	-0.6046	-0.00032844	-0.24751	-0.00013445	-0.8521	-0.00046289	543.2320489100957	95.273	0.5621	96.023	95.785	96.347	0.75045	0.020219	-0.00013329	NaN	12.241	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1071500	+		6940	28831	4879	4925							-0.08932264810118795
DQSKLIKKYWR	11	Unmodified	_DQSKLIKKYWR_					0	0	0			REV__ENST00000443754.1_1_9:67328347-67334199:-|nuORF	REV__ENST00000443754.1_1_9:67328347-67334199:-|nuORF	MSMS	A375_MHC_IP_R2	2	732.943603515625	2	732.919718	1463.82488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.09	1	68.825	68.325	69.325	0.73511								0	0	0	0.16302	1	25803	25803		2.9952	1.6657	1		+		6941	24828	4880	4926	6741	6741					0.11152372714036574
DQSKLIKKYWR	11	Unmodified	_DQSKLIKKYWR_					0	0	0			REV__ENST00000443754.1_1_9:67328347-67334199:-|nuORF	REV__ENST00000443754.1_1_9:67328347-67334199:-|nuORF	MSMS	A375_MHC_IP_R2	2	732.9111938476562	2	732.919718	1463.82488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.123	1	81.868	81.368	82.368	0.74474								0	0	0	0.16302	1	30804	30804		2.9952	0	1		+		6942	24828	4880	4926	6742	6742					0.11152372714036574
DQSLQHDLY	9	Unmodified	_DQSLQHDLY_					0	0	0			REV__nc|ENSG00000052126|Q9HAU0-2|PLEKHA5	REV__nc|ENSG00000052126|Q9HAU0-2|PLEKHA5	MSMS	A375_MHC_IP_R2	2	559.6790161132812	2	559.759278	1117.504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.261	1	32.998	32.498	33.498	0.73692								0	0	0	0.14767	1	11464	11464		25.399	6.1423	1		+		6943	27105	4881	4927	6743	6743					-0.05004929667029501
DQSLVGAPWSP	11	Unmodified	_DQSLVGAPWSP_					0	0	0			REV__ENST00000479686.5_1_1:43830675-43833245:-|nuORF	REV__ENST00000479686.5_1_1:43830675-43833245:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	579.1849365234375	2	578.785296	1155.55604	-0.28511	-0.00016502	-0.11969	-6.9276E-05	-0.4048	-0.00023429	578.7851177200712	33.145	0.55795	33.145	32.938	33.496	0					19	10	3	0	0	0	0.76597	1	10788	10788		28.495	0	1	6117700	+		6944	25236	4882	4928	6744	6744					-0.015517662533056864
DQSRVFHIP	9	Unmodified	_DQSRVFHIP_					0	0	0			REV__nc|ENSG00000188282|Q6ZNE9-3|RUFY4	REV__nc|ENSG00000188282|Q6ZNE9-3|RUFY4	MSMS	A375_MHC_IP_R2	2	549.6495361328125	2	549.788173	1097.56179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.43	1	33.167	32.667	33.667	0.73692								0	0	0	0.11922	1	11544	11544		36.127	7.0454	1		+		6945	22081	4883	4929	6745	6745					0.016913770490418756
DQTFKFTSL	9	Unmodified	_DQTFKFTSL_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000525495.6_2_17:45219385-45266538:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	544.1761474609375	2	543.776939	1085.53933	-0.75954	-0.00041302	-0.70885	-0.00038546	-1.4684	-0.00079848	543.7768201310172	42.112	0.35812	42.884	42.707	43.065	0.7724					12	6	2	0	0	0	0.60917	1	15710	15710		9.3831	0	1	2324900			6946	876	4884	4930	6746	6746					-2.2671392343909247E-05
DQTFTHSDLR	10	Unmodified	_DQTFTHSDLR_					0	0	0		tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	610.6888427734375	2	610.288734	1218.56291	-0.62199	-0.00037959	-0.11961	-7.2997E-05	-0.7416	-0.00045259	610.2886816527007	66.414	0.61338	67.15	66.882	67.495	0.73631					27	11	4	0	0	0	0.70012	1	25142	25142		12.241	1.4411	1	2816500			6947	29948	4885	4931	6747	6747					-0.037624533727239395
DQTFTHSDLR	10	Unmodified	_DQTFTHSDLR_					0	0	0		tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	610.288734	1218.56291	-0.60397	-0.0003686	0.036378	2.2201E-05	-0.56759	-0.0003464	610.2888141559373	67.034	0.6642	67.034	66.684	67.348	0	-0.058052	0.00014803	NaN	12.241	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3446500			6948	29948	4885	4931							-0.037624533727239395
DQTFTHSDLR	10	Unmodified	_DQTFTHSDLR_					0	0	0		tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	610.288734	1218.56291	-0.62199	-0.00037959	-0.11961	-7.2997E-05	-0.7416	-0.00045259	610.2886816527007	66.414	0.61338	67.15	66.882	67.495	0.73631	0.058052	-4.2363E-05	NaN	12.241	27	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2816500			6949	29948	4885	4931							-0.037624533727239395
DQTLFTRLY	9	Unmodified	_DQTLFTRLY_					0	0	0			REV__ENSG00000128268|ENST00000341184|MGAT3	REV__ENSG00000128268|ENST00000341184|MGAT3	MULTI-SECPEP	A375_MHC_IP_R2	2	579.2034912109375	2	578.803488	1155.59242	-0.38451	-0.00022255	-0.044913	-2.5996E-05	-0.42942	-0.00024855	578.8034487540234	36.303	0.40791	37.074	36.85	37.258	0.7709					16	7	3	0	0	0	0.37663	1	13215	13215		43.772	1.8168	1	6577300	+		6950	18444	4886	4932	6748	6748					0.020851106434292888
DQTQEKIY	8	Unmodified	_DQTQEKIY_					0	0	0			REV__ENSG00000077935|ENST00000357450|SMC1B	REV__ENSG00000077935|ENST00000357450|SMC1B	MULTI-SECPEP	A375_MHC_IP_R1	1	512.6343994140625	2	512.750921	1023.48729	-0.39703	-0.00020358	0.43169	0.00022135	0.034666	1.7775E-05	512.7508053592262	62.999	0.97424	62.999	62.351	63.326	0					23	15	2	0	0	0	0.93661	1	22864	22864		10.824	6.4947	1	995390	+		6951	16699	4887	4933	6749	6749					-0.02351430553017053
DQTRFHFELKP	11	Unmodified	_DQTRFHFELKP_					0	0	0			REV__tr|U7T5W1|U7T5W1_FUSNUHTHluxR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00104PE=4SV=1	REV__tr|U7T5W1|U7T5W1_FUSNUHTHluxR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00104PE=4SV=1	MSMS	A375_MHC_IP_R2	2	709.3692016601562	2	709.364776	1416.715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.05	1	109.79	109.29	110.29	0.74684								0	0	0	0.16249	1	41161	41161		5.7319	0	1		+		6952	28839	4888	4934	6750	6750					0.023309473748440723
DQVCAFQFQ	9	Unmodified	_DQVCAFQFQ_					0	0	0		ENST00000491706.5_1_2:66667732-66670276:+|nuORF	ENST00000491706.5_1_2:66667732-66670276:+|nuORF	ENST00000491706.5_1_2:66667732-66670276:+|nuORF	MSMS	A375_MHC_IP_R1	1	543.174560546875	2	543.239667	1084.46478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.093	1	70.093	69.593	70.593	0								0	0	0	0.14767	1	25444	25444		25.399	7.253	1				6953	12663	4889	4935	6751	6751					-0.07407353222265556
DQVERCMGAM	10	Unmodified	_DQVERCMGAM_					0	0	0		nc|ENSG00000149527|O75038-2|PLCH2	nc|ENSG00000149527|O75038-2|PLCH2	nc|ENSG00000149527|O75038-2|PLCH2	MULTI-SECPEP	A375_MHC_IP_R1	1	570.6355590820312	2	570.235744	1138.45693	-0.47466	-0.00027067	0.96204	0.00054859	0.48738	0.00027792	570.2360779711278	91.167	0.50508	91.167	90.845	91.35	0					15	9	2	0	0	0	0.73104	1	33508	33508		31.268	13.122	1	2468100			6954	14674	4890	4936	6752	6752					-0.10675571805700201
DQVERCMGAM	10	Unmodified	_DQVERCMGAM_					0	0	0		nc|ENSG00000149527|O75038-2|PLCH2	nc|ENSG00000149527|O75038-2|PLCH2	nc|ENSG00000149527|O75038-2|PLCH2	MULTI-SECPEP	A375_MHC_IP_R2	2	570.6361694335938	2	570.235744	1138.45693	-0.20767	-0.00011842	0.74392	0.00042421	0.53626	0.00030579	570.2361137507323	90.602	0.50736	91.336	90.956	91.463	0.7345					15	9	2	0	0	0	0.77698	1	34464	34464		28.495	10.348	1	2414500			6955	14674	4890	4936	6753	6753					-0.10675571805700201
DQVGTLLPLW	10	Unmodified	_DQVGTLLPLW_					0	0	0		ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	MULTI-SECPEP	A375_MHC_IP_R1	1	570.6355590820312	2	571.316232	1140.61791	-0.42222	-0.00024122	-1.4859	-0.00084894	-1.9082	-0.0010902	571.3157486872741	91.348	0.45554	91.348	90.997	91.452	0					10	8	2	0	0	0	0.87043	1	33508	33508		15.248	1.7406	1	1136400			6956	3806	4891	4937	6754	6754					0.053225851658453394
DQVKKAFAF	9	Unmodified	_DQVKKAFAF_					0	0	0		ENSG00000188822|ENST00000374472|CNR2	ENSG00000188822|ENST00000374472|CNR2	ENSG00000188822|ENST00000374472|CNR2	MULTI-SECPEP	A375_MHC_IP_R1	1	526.6739501953125	2	527.290017	1052.56548	-0.47467	-0.00025029	0.38128	0.00020104	-0.093398	-4.9248E-05	527.2902922509385	68.743	0.35474	68.743	68.565	68.92	0					10	6	2	0	0	0	0.55359	1	24996	24996		21.747	8.2388	1	1713600			6957	8940	4892	4938	6755	6755					0.04130046822888289
DQVKKIRCL	9	Unmodified	_DQVKKIRCL_					0	0	0			REV__NEB|p.R123C|1|0.36|ENSG00000183091|chr2:151725488-151725488|G/A|missense_variant	REV__NEB|p.R123C|1|0.36|ENSG00000183091|chr2:151725488-151725488|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	368.2732849121094	3	368.218226	1101.63285	-0.15831	-5.8291E-05	0.3934	0.00014486	0.23509	8.6565E-05	368.552703600582	37.479	0.35815	38.249	38.02	38.378	0.7709					10	6	2	0	0	0	0.74412	1	13640	13640		3.8763	0	1	1719600	+		6958	27588	4893	4939	6756	6756					0.08609753762220862
DQVLLEQEPA	10	Unmodified	_DQVLLEQEPA_					0	0	0			REV__ENSG00000145990|ENST00000379287|GFOD1	REV__ENSG00000145990|ENST00000379287|GFOD1	MULTI-SECPEP	A375_MHC_IP_R2	2	571.1700439453125	2	571.290411	1140.56627	-0.28851	-0.00016482	-3.885	-0.0022194	-4.1735	-0.0023843	571.7917765828379	77.08	1.0121	77.823	77.303	78.315	0.74293					23	19	2	0	0	0	0.91556	1	29081	29081		3.2813	0	1	2824700	+		6959	19509	4894	4940	6757	6757					0.0016079668127986224
DQWDVEDESSD	11	Unmodified	_DQWDVEDESSD_					0	0	0			REV__ENST00000581302.5_1_18:21033283-21057068:+|nuORF	REV__ENST00000581302.5_1_18:21033283-21057068:+|nuORF	MSMS	A375_MHC_IP_R2	2	662.6825561523438	2	662.744219	1323.47388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.534	1	81.279	80.779	81.779	0.74474								0	0	0	0.16265	1	30575	30575		4.897	0	1		+		6960	17184	4895	4941	6758	6758					-0.17491377913552242
DQWNSANI	8	Unmodified	_DQWNSANI_					0	0	0			REV__ENST00000557013.1_1_14:55168817-55201659:+|nuORF	REV__ENST00000557013.1_1_14:55168817-55201659:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	474.6499328613281	2	474.214506	946.414459	-0.32803	-0.00015556	-0.26177	-0.00012413	-0.58979	-0.00027969	474.2143344887022	35.861	0.66217	35.861	35.625	36.287	0					25	12	3	0	0	0	0.77488	1	12106	12106		13.508	3.3245	1	12969000	+		6961	16264	4896	4942	6759	6759					-0.06089139555763268
DQWWHKEY	8	Unmodified	_DQWWHKEY_					0	0	0			REV__ENSG00000066777|ENST00000262215|ARFGEF1	REV__ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-SECPEP	A375_MHC_IP_R1	1	596.654052734375	2	596.26453	1190.51451	-0.46353	-0.00027639	4.0207	0.0023974	3.5572	0.002121	596.2673667577177	77.075	0.25433	77.075	76.93	77.184	0					6	4	2	0	0	0	0.972	1	28116	28116		9.3474	3.1417	1	632320	+		6962	16524	4897	4943	6760	6760					-0.07312902221974582
DQYAKYIS	8	Unmodified	_DQYAKYIS_					0	0	0			REV__nc|ENSG00000089876|Q7L7V1-2|DHX32	REV__nc|ENSG00000089876|Q7L7V1-2|DHX32	MULTI-MSMS	A375_MHC_IP_R1	1	495.66680908203125	2	494.242732	986.470912	-0.358	-0.00017694	0.073305	3.6231E-05	-0.2847	-0.00014071	494.2427722907277	50.279	2.2917	50.279	49.793	52.085	0					114	44	5	0	0	0	0.70206	1	17724	17724		34.102	3.8776	1	335520000	+		6963	16920	4898	4944	6761	6761					-0.022865117191145146
DQYDDLYVF	9	Unmodified	_DQYDDLYVF_					0	0	0		nc|ENSG00000153064|Q8NDB2-4|BANK1;nc|ENSG00000153064|Q8NDB2-3|BANK1;nc|ENSG00000153064|Q8NDB2-2|BANK1;ENSG00000153064|ENST00000322953|BANK1;BANK1|p.P492S|1|0.61|ENSG00000153064|chr4:102025389-102025389|C/T|missense_variant	nc|ENSG00000153064|Q8NDB2-4|BANK1	nc|ENSG00000153064|Q8NDB2-4|BANK1	MULTI-MSMS	A375_MHC_IP_R1	1	589.65478515625	2	589.256037	1176.49752	-0.5327	-0.00031389	-0.97053	-0.00057189	-1.5032	-0.00088579	589.2555482347807	90.531	0.61118	90.531	90.285	90.896	0					26	11	3	0	0	0	0.2264	1	33264	33264		36.044	10.645	1	3332400			6964	6002	4899	4945	6762	6762					-0.08366867618428842
DQYEDIMIY	9	Unmodified	_DQYEDIMIY_					0	0	0			REV__tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	REV__tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	595.1558837890625	2	595.257722	1188.50089	-0.41007	-0.0002441	0.97358	0.00057953	0.56351	0.00033543	595.2581929514356	44.002	1.0104	44.771	44.329	45.34	0.76909					27	19	2	0	0	0	0.65527	1	16355	16355		17.113	2.2746	1	2506500	+		6965	28238	4900	4946	6763	6763					-0.08581940836074864
DQYHRWWFRKF	11	Unmodified	_DQYHRWWFRKF_					0	0	0			REV__ENST00000354179.8_2_5:176671236-176673694:+|nuORF	REV__ENST00000354179.8_2_5:176671236-176673694:+|nuORF	MSMS	A375_MHC_IP_R1	1	834.9124145507812	2	834.912759	1667.81096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.655	1	80.655	80.155	81.155	0								0	0	0	0.16312	1	29461	29461		2.4985	2.2295	1		+		6966	23808	4901	4947	6764	6764					0.003771400055484264
DQYLAICRPL	10	Unmodified	_DQYLAICRPL_					0	0	0		ENSG00000258453|ENST00000556246|OR11H2;ENSG00000130538|ENST00000643195|OR11H1;nc|ENSG00000258453|Q8NH07|OR11H2;nc|ENSG00000130538|Q8NG94|OR11H1;ENSG00000257115|ENST00000550708|OR11H12	ENSG00000258453|ENST00000556246|OR11H2	ENSG00000258453|ENST00000556246|OR11H2	MULTI-SECPEP	A375_MHC_IP_R1	1	397.95465087890625	3	397.877869	1190.61178	-0.21201	-8.4354E-05	3.8166	0.0015185	3.6046	0.0014342	397.8798232159059	58.458	0.35427	58.458	58.177	58.531	0					8	6	2	0	0	0	0.91909	1	20987	20987		1.4551	0.12547	1	551190			6967	4253	4902	4948	6765	6765					0.024097436626789204
DQYWLRHR	8	Unmodified	_DQYWLRHR_					0	0	0			REV__ENST00000523648.5_1_5:163781227-163919838:+|nuORF	REV__ENST00000523648.5_1_5:163781227-163919838:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	587.1852416992188	2	587.299239	1172.58392	-0.34496	-0.0002026	1.7568	0.0010318	1.4118	0.00082917	587.3013333256592	94.452	0.50729	95.197	94.919	95.426	0.74474					13	9	3	0	0	0	0.972	1	35829	35829		12.532	0	1	942440	+		6968	25746	4903	4949	6766	6766					0.00453601517460811
DRCEWFYE	8	Unmodified	_DRCEWFYE_					0	0	0		ENSG00000085382|ENST00000262903|HACE1;nc|ENSG00000085382|Q8IYU2-3|HACE1	ENSG00000085382|ENST00000262903|HACE1	ENSG00000085382|ENST00000262903|HACE1	MULTI-MSMS	A375_MHC_IP_R1	1	1147.8525390625	1	1147.45132	1146.44404	-0.32208	-0.00036957	0.90665	0.0010403	0.58457	0.00067076	1147.4524893202502	144.74	0.12196	144.74	144.65	144.77	0					6	2	3	0	0	0	0.77842	1	55509	55509		0.69038	0	1	1448900			6969	1810	4904	4950	6767	6767					-0.12331943601930107
DRCEWFYE	8	Unmodified	_DRCEWFYE_					0	0	0		ENSG00000085382|ENST00000262903|HACE1;nc|ENSG00000085382|Q8IYU2-3|HACE1	ENSG00000085382|ENST00000262903|HACE1	ENSG00000085382|ENST00000262903|HACE1	MULTI-MSMS	A375_MHC_IP_R2	2	1147.8502197265625	1	1147.45132	1146.44404	0.33378	0.00038299	0.48639	0.0005581	0.82016	0.0009411	1147.4516293345453	144.76	0.15521	144.78	144.69	144.84	0.021408					5	3	2	0	0	0	0.77842	1	56547	56547		0.69038	0	1	1736400			6970	1810	4904	4950	6768	6768					-0.12331943601930107
DRDLATLKKYW	11	Unmodified	_DRDLATLKKYW_					0	0	0		nc|ENSG00000165259|Q7Z353-2|HDX;ENSG00000165259|ENST00000373177|HDX	nc|ENSG00000165259|Q7Z353-2|HDX	nc|ENSG00000165259|Q7Z353-2|HDX	MULTI-SECPEP	A375_MHC_IP_R2	2	471.010498046875	3	470.257626	1407.75105	-0.55988	-0.00026329	0.034766	1.6349E-05	-0.52511	-0.00024694	470.2577873226794	132.43	1.2699	132.62	131.7	132.97	0.18953					29	24	2	0	0	0	1.0012	1	52099	52099		1.2148	0	1	2644300			6971	6931	4905	4951	6769	6769					0.06348404551727072
DREAEGQFY	9	Unmodified	_DREAEGQFY_					0	0	0		ENSG00000222018|ENST00000410005|C21orf140	ENSG00000222018|ENST00000410005|C21orf140	ENSG00000222018|ENST00000410005|C21orf140	MULTI-MSMS	A375_MHC_IP_R2	2	557.6636962890625	2	557.743628	1113.4727	-1.2927	-0.00072099	0.44269	0.00024691	-0.84999	-0.00047408	557.7439629734525	28.532	0.50355	29.219	29.019	29.522	0.68742					13	9	2	0	0	0	0.60101	1	9805	9805		14.838	14.838	1	11370000			6972	9683	4906	4952	6770	6770					-0.07949502701148958
DREDLVEL	8	Unmodified	_DREDLVEL_					0	0	0		ZNF839|p.F398Sfs*36|1|0.24|ENSG00000022976|chr14:102335715-102335715|T/-|frameshift_variant;nc|ENSG00000022976|A8K0R7|ZNF839;nc|ENSG00000022976|A8K0R7-2|ZNF839;ENSG00000022976|ENST00000442396|ZNF839	ZNF839|p.F398Sfs*36|1|0.24|ENSG00000022976|chr14:102335715-102335715|T/-|frameshift_variant	ZNF839|p.F398Sfs*36|1|0.24|ENSG00000022976|chr14:102335715-102335715|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	494.7079772949219	2	494.750921	987.48729	-0.56418	-0.00027913	0.51156	0.00025309	-0.052623	-2.6035E-05	494.75074512631096	72.662	0.96815	73.397	73.073	74.041	0.73541					43	18	3	0	0	0	0.15346	1	27608	27608		85.357	9.5959	1	4741400			6973	1070	4907	4953	6771	6771					-0.006954305530030069
DREDRDRKRDY	11	Unmodified	_DREDRDRKRDY_					0	0	0			REV__ENSG00000140829|ENST00000268482|DHX38	REV__ENSG00000140829|ENST00000268482|DHX38	MSMS	A375_MHC_IP_R2	2	508.6639709472656	3	508.581832	1522.72367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.652	1	44.421	43.921	44.921	0.7691								0	0	0	0.16336	1	16268	16268		1.2148	0.70888	1		+		6974	19230	4908	4954	6772	6772					-0.01678730726644062
DREGTWQSEEY	11	Unmodified	_DREGTWQSEEY_					0	0	0			REV__nc|ENSG00000161270|O60500-2|NPHS1	REV__nc|ENSG00000161270|O60500-2|NPHS1	MULTI-MSMS	A375_MHC_IP_R1	1	467.59710693359375	3	467.196872	1398.56879	-0.12281	-5.7375E-05	-0.080106	-3.7425E-05	-0.20291	-9.4801E-05	467.19695030408644	70.35	1.3223	70.35	69.579	70.902	0					51	25	4	0	0	0	0.72585	1	25511	25511		12.856	0.62836	1	9687100	+		6975	20204	4909	4955	6773	6773					-0.11455399651708831
DREGTWQSEEY	11	Unmodified	_DREGTWQSEEY_					0	0	0			REV__nc|ENSG00000161270|O60500-2|NPHS1	REV__nc|ENSG00000161270|O60500-2|NPHS1	MULTI-SECPEP	A375_MHC_IP_R1	1	467.95880126953125	3	467.196872	1398.56879	-0.12281	-5.7375E-05	-0.080106	-3.7425E-05	-0.20291	-9.4801E-05	467.19695030408644	70.35	1.3223	70.35	69.579	70.902	0					51	25	4	0	0	0	0.9907	1	25505	25505		9.2438	0	1	9687100	+		6976	20204	4909	4955	6774	6774					-0.11455399651708831
DREGTWQSEEY	11	Unmodified	_DREGTWQSEEY_					0	0	0			REV__nc|ENSG00000161270|O60500-2|NPHS1	REV__nc|ENSG00000161270|O60500-2|NPHS1	MULTI-SECPEP	A375_MHC_IP_R2	2	467.59698486328125	3	467.196872	1398.56879	-0.54916	-0.00025656	0.144	6.7275E-05	-0.40516	-0.00018929	467.1970918604838	69.561	0.96455	70.295	69.778	70.743	0.73421					51	18	4	0	0	0	0.99482	1	26319	26319		6.2344	0.36622	1	9971700	+		6977	20204	4909	4955	6775	6775					-0.11455399651708831
DRELLQWLERR	11	Unmodified	_DRELLQWLERR_					0	0	0		ENSG00000248099|ENST00000317306|INSL3	ENSG00000248099|ENST00000317306|INSL3	ENSG00000248099|ENST00000317306|INSL3	MSMS	A375_MHC_IP_R1	1	757.361083984375	2	757.415331	1512.81611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.783	1	79.783	79.283	80.283	0								0	0	0	0.1632	1	29125	29125		2.086	0.60411	1				6978	9832	4910	4956	6776	6776					0.08021399077529168
DRENSCRYY	9	Unmodified	_DRENSCRYY_					0	0	0		XYLT1|p.G671R|1|0.33|ENSG00000103489|chr16:17134489-17134489|C/T|missense_variant	XYLT1|p.G671R|1|0.33|ENSG00000103489|chr16:17134489-17134489|C/T|missense_variant	XYLT1|p.G671R|1|0.33|ENSG00000103489|chr16:17134489-17134489|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	1205.5767822265625	1	1205.5004	1204.49312	0.047588	5.7368E-05	-0.50093	-0.00060387	-0.45334	-0.0005465	1205.4994162944133	101.75	0.45361	101.75	101.5	101.95	0					13	8	2	0	0	0	0.6324	1	37410	37410		13.042	2.2185	1	1937900			6979	30174	4911	4957	6777	6777					-0.10094655312968825
DRENSCRYY	9	Unmodified	_DRENSCRYY_					0	0	0		XYLT1|p.G671R|1|0.33|ENSG00000103489|chr16:17134489-17134489|C/T|missense_variant	XYLT1|p.G671R|1|0.33|ENSG00000103489|chr16:17134489-17134489|C/T|missense_variant	XYLT1|p.G671R|1|0.33|ENSG00000103489|chr16:17134489-17134489|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		1	1205.5004	1204.49312	0.31953	0.00038519	-0.56865	-0.00068551	-0.24912	-0.00030032	1205.4993953416827	101.19	0.51105	101.95	101.65	102.16	0.76428	0.10346	-3.4772E-05	NaN	13.042	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2279700			6980	30174	4911	4957							-0.10094655312968825
DRERKKRSE	9	Unmodified	_DRERKKRSE_					0	0	0			REV__nc|ENSG00000107937|Q9BZE4-3|GTPBP4	REV__nc|ENSG00000107937|Q9BZE4-3|GTPBP4	MULTI-SECPEP	A375_MHC_IP_R2	2	402.6472473144531	3	401.889937	1202.64798	-0.022458	-9.0255E-06	1.835	0.00073746	1.8125	0.00072843	401.89029403108856	30.571	1.0625	31.289	30.454	31.517	0.71857					22	10	3	0	0	0	0.80713	1	10414	10414		4.1895	1.5583	1	2973200	+		6981	17506	4912	4958	6778	6778					0.05476336883748445
DRFQRDLGWPW	11	Unmodified	_DRFQRDLGWPW_					0	0	0			REV__ENSG00000249715|ENST00000624922|FER1L5	REV__ENSG00000249715|ENST00000624922|FER1L5	MSMS	A375_MHC_IP_R2	2	492.4774475097656	3	492.57747	1474.71058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.792	1	43.564	43.064	44.064	0.7724								0	0	0	0.16302	1	15927	15927		1.2148	0	1		+		6982	22838	4913	4959	6779	6779					-0.007785170480701709
DRFWDQWYLWY	11	Unmodified	_DRFWDQWYLWY_					0	0	0		nc|ENSG00000160145|O60229|KALRN;ENST00000488825.5_1_3:123813684-123881061:+|nuORF;nc|ENSG00000160145|O60229-2|KALRN	nc|ENSG00000160145|O60229|KALRN	nc|ENSG00000160145|O60229|KALRN	MSMS	A375_MHC_IP_R2	2	559.9231567382812	3	559.921014	1676.74121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.9	1	105.67	105.17	106.17	0.76308								0	0	0	0.16352	1	39683	39683		0.40827	0.335	1				6983	14707	4914	4960	6780	6780					-0.0700878345367073
DRGCRHPDEGP	11	Unmodified	_DRGCRHPDEGP_					0	0	0			REV__ENST00000493635.1_1_6:36982408-36988336:+|nuORF	REV__ENST00000493635.1_1_6:36982408-36988336:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	620.170166015625	2	619.770185	1237.52582	-0.36908	-0.00022874	0.72784	0.0004511	0.35877	0.00022235	619.7699190139526	47.442	0.76297	47.442	47.107	47.87	0					47	14	5	0	0	0	0.077148	2	16663	16663;16772		74.2	11.627	1	17724000	+		6984	24095	4915	4961	6781;6782	6781					-0.08344448190132425
DRGCRHPDEGP	11	Unmodified	_DRGCRHPDEGP_					0	0	0			REV__ENST00000493635.1_1_6:36982408-36988336:+|nuORF	REV__ENST00000493635.1_1_6:36982408-36988336:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	620.1694946289062	2	619.770185	1237.52582	-0.51486	-0.00031909	0.94965	0.00058857	0.43479	0.00026947	619.7701048304697	46.816	0.86674	47.577	47.104	47.97	0.76127					39	16	4	0	0	0	0.14903	2	17510	17510;17575		61.602	15.902	1	15295000	+		6985	24095	4915	4961	6783;6784	6783					-0.08344448190132425
DRGDAFDFN	9	Unmodified	_DRGDAFDFN_					0	0	0		ENST00000542095.6_2_12:8234884-8244447:+|nuORF;nc|ENSG00000157191|Q9NVZ3-3|NECAP2;ENST00000496239.5_1_1:16767256-16775723:+|nuORF;nc|ENSG00000157191|Q9NVZ3-4|NECAP2;ENSG00000157191|ENST00000337132|NECAP2;nc|ENSG00000157191|Q9NVZ3-2|NECAP2;ENSG00000089818|ENST00000339754|NECAP1	ENST00000542095.6_2_12:8234884-8244447:+|nuORF	ENST00000542095.6_2_12:8234884-8244447:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	528.7164916992188	2	528.722695	1055.43084	-0.63238	-0.00033435	-0.18672	-9.8724E-05	-0.8191	-0.00043308	529.2239396269553	76.881	0.20493	76.881	76.776	76.981	0					5	3	2	0	0	0	0.61998	1	28066	28066		13.906	1.3745	1	689190			6986	1935	4916	4962	6785	6785					-0.09466058389648424
DRGRAFMFM	9	Unmodified	_DRGRAFMFM_					0	0	0		EPX|p.L222F|1|0.44|ENSG00000121053|chr17:58195033-58195033|C/T|missense_variant	EPX|p.L222F|1|0.44|ENSG00000121053|chr17:58195033-58195033|C/T|missense_variant	EPX|p.L222F|1|0.44|ENSG00000121053|chr17:58195033-58195033|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	377.2649841308594	3	377.512645	1129.5161	0.16311	6.1575E-05	-0.78101	-0.00029484	-0.61791	-0.00023327	377.51233739461725	31.091	1.2131	31.091	30.301	31.514	0					24	23	2	0	0	0	0.75842	1	10081	10081		8.9762	1.8745	1	981090			6987	13951	4917	4963	6786	6786					-0.04347307729199201
DRGRSPARGE	10	Unmodified	_DRGRSPARGE_					0	0	0			REV__WDR33|p.P1118S|1|0.25|ENSG00000136709|chr2:127709813-127709813|G/A|missense_variant	REV__WDR33|p.P1118S|1|0.25|ENSG00000136709|chr2:127709813-127709813|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	367.4249267578125	3	367.523366	1099.54827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.592	1	22.592	22.092	23.092	0								0	0	0	0.15539	1	6081	6081		3.3196	0.58445	1		+		6988	28993	4918	4964	6787	6787					0.002475192697829698
DRINEMVHF	9	Unmodified	_DRINEMVHF_					0	0	0		nc|ENSG00000197785|Q9NVI7-3|ATAD3A;ENSG00000197785|ENST00000378756|ATAD3A;nc|ENSG00000197785|Q9NVI7|ATAD3A	nc|ENSG00000197785|Q9NVI7-3|ATAD3A	nc|ENSG00000197785|Q9NVI7-3|ATAD3A	MSMS	A375_MHC_IP_R2	2	387.4451599121094	3	387.522086	1159.54443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.751	1	40.526	40.026	41.026	0.77451								0	0	0	0.15486	1	14694	14694		0.96228	0.55401	1				6989	9195	4919	4965	6788	6788					-0.02896286548275384
DRIQIEFYD	9	Unmodified	_DRIQIEFYD_					0	0	0			REV__ENSG00000013561|ENST00000394520|RNF14	REV__ENSG00000013561|ENST00000394520|RNF14	MULTI-MSMS	A375_MHC_IP_R1	1	400.5955810546875	3	400.196144	1197.5666	-0.47086	-0.00018844	-0.9107	-0.00036446	-1.3816	-0.00055289	400.1958337733159	24.137	0.70689	24.137	23.991	24.698	0					27	13	3	0	0	0	0.69884	1	6792	6792		7.1017	2.0542	1	16403000	+		6990	16236	4920	4966	6789	6789					-0.024277835988641527
DRIWFRRLEHW	11	Unmodified	_DRIWFRRLEHW_					0	0	0			REV__ENST00000549078.5_1_12:53344429-53346127:+|nuORF	REV__ENST00000549078.5_1_12:53344429-53346127:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	807.8253784179688	2	807.426033	1612.83751	-0.16508	-0.00013329	-0.56871	-0.00045919	-0.7338	-0.00059249	807.4255022018875	111.91	0.50858	111.91	111.57	112.08	0					20	9	3	0	0	0	0.73897	1	41022	41022		0.35063	0.043601	1	3855600	+		6991	26023	4921	4967	6790	6790					0.055608288969096975
DRKKEREL	8	Unmodified	_DRKKEREL_					0	0	0			REV__STOX2|p.E811K|1|0.23|ENSG00000173320|chr4:184011269-184011269|G/A|missense_variant	REV__STOX2|p.E811K|1|0.23|ENSG00000173320|chr4:184011269-184011269|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	358.60699462890625	3	358.540245	1072.59891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.267	1	44.267	43.767	44.767	0								0	0	0	0.16876	1	15437	15437		2.9952	0.71247	1		+		6992	28060	4922	4968	6791	6791					0.06551048594792519
DRKRLAEL	8	Unmodified	_DRKRLAEL_					0	0	0		nc|ENSG00000177963|Q9NPQ8-4|RIC8A;ENSG00000177963|ENST00000526104|RIC8A;nc|ENSG00000177963|Q9NPQ8-3|RIC8A;ENST00000526982.1_1_11:209264-210619:+|nuORF	nc|ENSG00000177963|Q9NPQ8-4|RIC8A	nc|ENSG00000177963|Q9NPQ8-4|RIC8A	MULTI-SECPEP	A375_MHC_IP_R2	2	501.1985778808594	2	500.79854	999.582528	-0.5641	-0.0002825	0.74474	0.00037297	0.18064	9.0465E-05	500.7987573323022	131.63	0.86342	131.82	131.29	132.15	0.18953					27	16	2	0	0	0	0.95423	1	51806	51806		12.532	12.532	1	5002400			6993	8118	4923	4969	6792	6792					0.08271967428709104
DRLHLHLFM	9	Unmodified	_DRLHLHLFM_					0	0	0		ENST00000488605.1_1_13:50096192-50101394:+|nuORF	ENST00000488605.1_1_13:50096192-50101394:+|nuORF	ENST00000488605.1_1_13:50096192-50101394:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	393.9537048339844	3	394.546454	1180.61753	-0.096407	-3.8037E-05	0.74594	0.00029431	0.64953	0.00025627	394.8815489660971	19.52	0.76195	19.52	19.268	20.03	0					24	14	2	0	0	0	0.73363	1	4746	4746		7.1017	0	1	2119600			6994	12618	4924	4970	6793	6793					0.03444886965007754
DRLVPELDTI	10	Unmodified	_DRLVPELDTI_					0	0	0		ENST00000475214.5_1_3:135974226-136045892:+|nuORF;ENSG00000114054|ENST00000251654|PCCB;nc|ENSG00000114054|P05166-2|PCCB	ENST00000475214.5_1_3:135974226-136045892:+|nuORF	ENST00000475214.5_1_3:135974226-136045892:+|nuORF	MSMS	A375_MHC_IP_R1	1	390.95135498046875	3	390.883677	1169.6292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.384	1	68.384	67.884	68.884	0								0	0	0	0.15152	1	24792	24792		14.957	2.7824	1				6995	3194	4925	4971	6794	6794					0.05117362469309228
DRNRSWWRKRF	11	Unmodified	_DRNRSWWRKRF_					0	0	0		GAPVD1|p.P976S|1|0.3|ENSG00000165219|chr9:125341225-125341225|C/T|missense_variant	GAPVD1|p.P976S|1|0.3|ENSG00000165219|chr9:125341225-125341225|C/T|missense_variant	GAPVD1|p.P976S|1|0.3|ENSG00000165219|chr9:125341225-125341225|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	536.8946533203125	3	536.286913	1605.83891	-0.76752	-0.00041161	-2.2123	-0.0011864	-2.9798	-0.001598	536.2864283943942	89.864	0.25737	90.596	90.391	90.648	0.7318					6	4	2	0	0	0	1.0014	1	34182	34182		0.50596	0.41111	1	862650			6996	14037	4926	4972	6795	6795					0.06022462985652055
DRPHRPTV	8	Unmodified	_DRPHRPTV_					0	0	0		ENST00000333676.7_1_17:79674390-79674522:+|nuORF	ENST00000333676.7_1_17:79674390-79674522:+|nuORF	ENST00000333676.7_1_17:79674390-79674522:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	489.6136779785156	2	489.267407	976.520262	-0.16612	-8.1278E-05	0.16377	8.0129E-05	-0.0023485	-1.149E-06	489.2672393082877	56.458	0.55806	56.458	56.143	56.701	0					16	10	2	0	0	0	0.92636	1	20262	20262		11.64	0	1	961890			6997	10788	4927	4973	6796	6796					0.031062410803770035
DRPLRPHGR	9	Unmodified	_DRPLRPHGR_					0	0	0			REV__ENST00000245812.7_1_19:6372800-6374597:+|nuORF	REV__ENST00000245812.7_1_19:6372800-6374597:+|nuORF	MSMS	A375_MHC_IP_R1	1	368.6048889160156	3	368.544212	1102.61081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.426	1	45.426	44.926	45.926	0								0	0	0	0.15486	1	15894	15894		4.897	0.49086	1		+		6998	23109	4928	4974	6797	6797					0.06360710128637947
DRQIVQYH	8	Unmodified	_DRQIVQYH_					0	0	0		ENST00000589878.5_1_19:34663659-34686187:+|nuORF	ENST00000589878.5_1_19:34663659-34686187:+|nuORF	ENST00000589878.5_1_19:34663659-34686187:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	353.9172668457031	3	353.51744	1057.53049	-0.14198	-5.0191E-05	-0.60974	-0.00021555	-0.75171	-0.00026574	353.51731827903575	24.723	0.40499	24.723	24.597	25.002	0					9	7	2	0	0	0	0.97144	1	7113	7113		3.5965	1.1617	1	5602300			6999	13778	4929	4975	6798	6798					0.004028040149478329
DRQRASDPG	9	Unmodified	_DRQRASDPG_					0	0	0			REV__ENST00000431489.5_1_2:62933068-62933182:+|nuORF	REV__ENST00000431489.5_1_2:62933068-62933182:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.1639404296875	2	501.241587	1000.46862	-0.4062	-0.00020361	-0.041128	-2.0615E-05	-0.44733	-0.00022422	501.2415194683333	61.436	0.97004	61.436	60.973	61.943	0					44	18	3	0	0	0	0.60101	1	21994	21994		14.838	0.25658	1	21498000	+		7000	24705	4930	4976	6799	6799					-0.03159547404186469
DRSIYDAY	8	Unmodified	_DRSIYDAY_					0	0	0			REV__nc|ENSG00000163904|Q9HC62-2|SENP2	REV__nc|ENSG00000163904|Q9HC62-2|SENP2	MULTI-MSMS	A375_MHC_IP_R1	1	501.6289978027344	2	501.729989	1001.44543	-0.53682	-0.00026934	-1.096	-0.00054988	-1.6328	-0.00081922	501.72953249671417	41.023	0.45339	41.023	40.813	41.266	0					14	8	2	0	0	0	0.76654	1	14157	14157		15.847	1.9411	1	2587400	+		7001	20424	4931	4977	6800	6800					-0.05523986241530565
DRSPLELSVS	10	Unmodified	_DRSPLELSVS_					0	0	0		ENST00000523488.5_1_8:3008917-3019783:-|nuORF;ENST00000335551.11_1_8:3000159-3019783:-|nuORF	ENST00000523488.5_1_8:3008917-3019783:-|nuORF	ENST00000523488.5_1_8:3008917-3019783:-|nuORF	MSMS	A375_MHC_IP_R1	1	368.1137390136719	3	368.196144	1101.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.344	1	56.344	55.844	56.844	0								0	0	0	0.15089	1	20183	20183		10.315	0	1				7002	10809	4932	4978	6801	6801					0.01988216401127829
DRTSRNDF	8	Unmodified	_DRTSRNDF_					0	0	0		nc|ENSG00000126583|P05129-2|PRKCG;ENSG00000126583|ENST00000263431|PRKCG	nc|ENSG00000126583|P05129-2|PRKCG	nc|ENSG00000126583|P05129-2|PRKCG	MULTI-SECPEP	A375_MHC_IP_R2	2	505.1663818359375	2	505.736137	1009.45772	-0.55588	-0.00028113	2.2521	0.0011389	1.6962	0.00085782	505.73587958601587	86.164	0.46042	86.897	86.794	87.255	0.733					10	8	2	0	0	0	0.97144	1	32863	32863		14.582	5.9884	1	1019200			7003	4051	4933	4979	6802	6802					-0.04662949778480652
DRWRFYWKMVY	11	Unmodified	_DRWRFYWKMVY_					0	0	0		ENSG00000206579|ENST00000327381|XKR4	ENSG00000206579|ENST00000327381|XKR4	ENSG00000206579|ENST00000327381|XKR4	MULTI-MSMS	A375_MHC_IP_R1	1	551.0053100585938	3	550.606373	1648.79729	-0.69635	-0.00038341	-0.62589	-0.00034462	-1.3222	-0.00072803	550.6059845520607	39.567	0.50487	39.567	39.34	39.845	0					17	9	3	0	0	0	0.73924	1	13564	13564		0.094841	0.094841	1	8782400			7004	9547	4934	4980	6803	6803					-0.001158538178742674
DRWRFYWKMVY	11	Unmodified	_DRWRFYWKMVY_					0	0	0		ENSG00000206579|ENST00000327381|XKR4	ENSG00000206579|ENST00000327381|XKR4	ENSG00000206579|ENST00000327381|XKR4	MULTI-SECPEP	A375_MHC_IP_R2	2	550.1748046875	3	550.606373	1648.79729	-1.0366	-0.00057075	-0.49209	-0.00027095	-1.5287	-0.0008417	550.9402870349143	38.88	0.46116	39.654	39.453	39.914	0.77451					18	8	3	0	0	0	1.0015	1	14404	14404		0.094841	0.094841	1	5228100			7005	9547	4934	4980	6804	6804					-0.001158538178742674
DRWRFYWKMVY	11	Unmodified	_DRWRFYWKMVY_					0	0	0		ENSG00000206579|ENST00000327381|XKR4	ENSG00000206579|ENST00000327381|XKR4	ENSG00000206579|ENST00000327381|XKR4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	550.606373	1648.79729	-0.69635	-0.00038341	-0.62589	-0.00034462	-1.3222	-0.00072803	550.6059845520607	39.567	0.50487	39.567	39.34	39.845	0	-0.043484	-0.00011953	NaN	0.094841	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8782400			7006	9547	4934	4980							-0.001158538178742674
DRYHAIYFAML	11	Unmodified	_DRYHAIYFAML_					0	0	0		nc|ENSG00000164638|Q7RTT9-2|SLC29A4;ENSG00000164638|ENST00000396872|SLC29A4	nc|ENSG00000164638|Q7RTT9-2|SLC29A4	nc|ENSG00000164638|Q7RTT9-2|SLC29A4	MULTI-MSMS	A375_MHC_IP_R1	1	700.7454223632812	2	700.344997	1398.67544	-0.63821	-0.00044697	1.7787	0.0012457	1.1405	0.00079876	700.3455076008188	94.065	0.60497	94.065	93.686	94.291	0					24	11	3	0	0	0	0.7039	1	34540	34540		15.248	2.206	1	3537300			7007	6858	4935	4981	6805	6805					-0.007948959002305855
DRYPVEDYLD	10	Unmodified	_DRYPVEDYLD_					0	0	0		nc|ENSG00000182022|Q7LFX5-2|CHST15;ENSG00000182022|ENST00000435907|CHST15	nc|ENSG00000182022|Q7LFX5-2|CHST15	nc|ENSG00000182022|Q7LFX5-2|CHST15	MULTI-MSMS	A375_MHC_IP_R2	2	643.1903076171875	2	642.790775	1283.567	-1.0197	-0.00065545	-0.09566	-6.1489E-05	-1.1154	-0.00071694	642.791297415103	61.052	0.7565	61.797	61.314	62.07	0.74503					38	14	5	0	0	0	0.6502	1	23114	23114		17.113	3.2068	1	10303000			7008	8373	4936	4982	6806	6806					-0.06344408669679069
DSAALSDLHW	10	Unmodified	_DSAALSDLHW_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-2|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1;nc|ENSG00000131018|Q8NF91-11|SYNE1;nc|ENSG00000131018|Q8NF91-3|SYNE1;nc|ENSG00000131018|Q8NF91-9|SYNE1;ENST00000460912.6_1_6:152443573-152489284:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MSMS	A375_MHC_IP_R1	1	557.7194213867188	2	557.76182	1113.50909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.649	1	81.649	81.149	82.149	0								0	0	0	0.15308	1	29840	29840		10.824	1.4408	1				7009	4300	4937	4983	6807	6807					-0.043126258044367205
DSAVTDGKIN	10	Unmodified	_DSAVTDGKIN_					0	0	0		nc|ENSG00000109667|Q9NRM0-2|SLC2A9;ENSG00000109667|ENST00000264784|SLC2A9	nc|ENSG00000109667|Q9NRM0-2|SLC2A9	nc|ENSG00000109667|Q9NRM0-2|SLC2A9	MULTI-MSMS	A375_MHC_IP_R1	1	1019.1053466796875	1	1019.50038	1018.4931	0.13823	0.00014093	3.6044	0.0036746	3.7426	0.0038156	1019.503519273816	128.92	0.30675	128.92	128.84	129.14	0					6	5	2	0	0	0	0.55789	1	49576	49576		24.021	0.87215	1	6161900			7010	2881	4938	4984	6808	6808					-0.015403320413156507
DSCDTCEDGY	10	Unmodified	_DSCDTCEDGY_					0	0	0		nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	MSMS	A375_MHC_IP_R2	2	554.21337890625	2	554.165704	1106.31685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.155	1	38.929	38.429	39.429	0.77451								0	0	0	0.15585	1	14016	14016		1.8442	1.4435	1				7011	1250	4939	4985	6809	6809					-0.23205077329066626
DSCGLRQIAAP	11	Unmodified	_DSCGLRQIAAP_					0	0	0		nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1;ENST00000523718.5_1_8:17581004-17613316:-|nuORF;nc|ENSG00000129422|Q9ULD2-5|MTUS1	nc|ENSG00000129422|Q9ULD2-2|MTUS1;nc|ENSG00000129422|Q9ULD2-5|MTUS1	nc|ENSG00000129422|Q9ULD2-5|MTUS1	MULTI-MSMS	A375_MHC_IP_R1	1	566.7341918945312	2	565.784773	1129.55499	-0.21161	-0.00011973	0.60072	0.00033988	0.38911	0.00022015	565.7850293135192	45.755	0.75974	45.755	45.384	46.144	0					34	14	4	0	0	0	0.72119	1	15879	15879		13.906	3.8321	1	9908200			7012	4190;14596	4940	4986	6810	6810					-0.004603038938512327
DSCMAHSFT	9	Unmodified	_DSCMAHSFT_					0	0	0		ENST00000222120.7_1_19:11435792-11435960:-|nuORF	ENST00000222120.7_1_19:11435792-11435960:-|nuORF	ENST00000222120.7_1_19:11435792-11435960:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	499.0996398925781	2	499.688952	997.363352	-0.54416	-0.00027191	-1.8381	-0.00091847	-2.3822	-0.0011904	499.68778579695964	76.231	0.40456	76.972	76.64	77.045	0.74052					11	7	2	0	0	0	0.76827	1	28917	28917		3.5965	0	1	638080			7013	10111	4941	4987	6811	6811					-0.13543547916469834
DSCPELLIGVS	11	Unmodified	_DSCPELLIGVS_					0	0	0			REV__nc|ENSG00000031003|Q9NYF5-3|FAM13B	REV__nc|ENSG00000031003|Q9NYF5-3|FAM13B	MULTI-SECPEP	A375_MHC_IP_R2	2	377.5478820800781	3	378.190002	1131.54818	0.027165	1.0274E-05	-0.8267	-0.00031265	-0.79953	-0.00030237	378.52457110709423	27.951	0.30529	28.63	28.502	28.808	0.67857					8	5	2	0	0	0	0.95991	1	9566	9566		4.4062	2.6639	1	551380	+		7014	16299	4942	4988	6812	6812					-0.012336615650383465
DSDDDALLK	9	Unmodified	_DSDDDALLK_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MULTI-SECPEP	A375_MHC_IP_R1	1	496.63226318359375	2	496.232561	990.45057	-0.26276	-0.00013039	0.055909	2.7744E-05	-0.20685	-0.00010265	496.2324695869306	39.297	0.55899	39.297	39.033	39.592	0					14	10	2	0	0	0	0.40377	1	13414	13414		34.932	21.026	1	3712900			7015	6540	4943	4989	6813	6813					-0.04503727169560534
DSDDDALLK	9	Unmodified	_DSDDDALLK_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MULTI-SECPEP	A375_MHC_IP_R2	2	496.6319580078125	2	496.232561	990.45057	-0.84155	-0.0004176	0.035401	1.7567E-05	-0.80614	-0.00040004	496.23258368724703	38.538	0.40628	39.313	39.098	39.504	0.77451					13	7	2	0	0	0	0.05217	1	14197	14197		79.596	35.738	1	4120300			7016	6540	4943	4989	6814	6814					-0.04503727169560534
DSDDVIVPPMS	11	Unmodified	_DSDDVIVPPMS_					0	0	0		nc|ENSG00000092200|Q96KN7-4|RPGRIP1;nc|ENSG00000092200|Q96KN7-5|RPGRIP1;ENSG00000092200|ENST00000400017|RPGRIP1;nc|ENSG00000092200|Q96KN7-3|RPGRIP1;nc|ENSG00000092200|Q96KN7-2|RPGRIP1	nc|ENSG00000092200|Q96KN7-4|RPGRIP1	nc|ENSG00000092200|Q96KN7-4|RPGRIP1	MULTI-MSMS	A375_MHC_IP_R1	1	588.1687622070312	2	587.768454	1173.52235	-0.34349	-0.00020189	-0.24422	-0.00014354	-0.58771	-0.00034544	587.7682895875956	58.366	0.45617	58.366	58.126	58.582	0					19	8	3	0	0	0	0.52598	1	21010	21010		29.082	3.6823	1	1621100			7017	1999	4944	4990	6815	6815					-0.05746555807354525
DSDEESLGY	9	Unmodified	_DSDEESLGY_					0	0	0		ENSG00000119906|ENST00000238961|SLF2;nc|ENSG00000119906|Q8IX21-2|SLF2	ENSG00000119906|ENST00000238961|SLF2	ENSG00000119906|ENST00000238961|SLF2	MULTI-SECPEP	A375_MHC_IP_R1	1	508.098388671875	2	507.698551	1013.38255	-0.25448	-0.0001292	0.20785	0.00010553	-0.046628	-2.3673E-05	507.69855451609345	51.898	0.66073	51.898	51.475	52.136	0					21	12	3	0	0	0	0.65246	1	18451	18451		15.847	7.937	1	2509300			7018	3632	4945	4991	6816	6816					-0.12360596820201408
DSDEGRYIEY	10	Unmodified	_DSDEGRYIEY_					0	0	0		ENSG00000151229|ENST00000280871|SLC2A13	ENSG00000151229|ENST00000280871|SLC2A13	ENSG00000151229|ENST00000280871|SLC2A13	MSMS	A375_MHC_IP_R1	1	623.7130126953125	2	623.764757	1245.51496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.27	1	50.27	49.77	50.77	0								0	0	0	0.14628	1	17805	17805		24.882	9.6331	1				7019	5888	4946	4992	6817	6817					-0.09797572083402883
DSDESFSPVQ	10	Unmodified	_DSDESFSPVQ_					0	0	0			REV__FAM90A1|p.S455F|1|0.28|ENSG00000171847|chr12:8221853-8221853|G/A|missense_variant	REV__FAM90A1|p.S455F|1|0.28|ENSG00000171847|chr12:8221853-8221853|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1854248046875	2	555.732926	1109.4513	-0.84212	-0.00046799	0.15391	8.5533E-05	-0.68821	-0.00038246	555.7327236325656	39.419	0.55921	40.194	39.965	40.524	0.77451					12	10	2	0	0	0	0.91909	1	14656	14656		13.906	10.911	1	3376400	+		7020	26616	4947	4993	6818	6818					-0.09904932520498733
DSDFFTSYY	9	Unmodified	_DSDFFTSYY_					0	0	0		ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17	ENSG00000052841|ENST00000039989|TTC17	ENSG00000052841|ENST00000039989|TTC17	MULTI-MSMS	A375_MHC_IP_R1	1	573.1265258789062	2	572.727112	1143.43967	-0.57349	-0.00032845	0.11278	6.4591E-05	-0.46071	-0.00026386	572.7270746971788	121.14	0.61039	121.14	120.91	121.52	0					19	11	2	0	0	0	0.010057	1	44973	44973		125.62	89.58	1	18727000			7021	1242	4948	4994	6819	6819					-0.1263112954384269
DSDFFTSYY	9	Unmodified	_DSDFFTSYY_					0	0	0		ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17	ENSG00000052841|ENST00000039989|TTC17	ENSG00000052841|ENST00000039989|TTC17	MULTI-MSMS	A375_MHC_IP_R2	2	573.12744140625	2	572.727112	1143.43967	-0.23844	-0.00013656	-0.54404	-0.00031159	-0.78248	-0.00044815	572.7267938687665	120.55	0.60354	121.08	120.85	121.46	0.5321					20	11	2	0	0	0	0.010057	1	46014	46014		125.62	89.58	1	33301000			7022	1242	4948	4994	6820	6820					-0.1263112954384269
DSDFRKDDFY	10	Unmodified	_DSDFRKDDFY_					0	0	0		ENST00000549192.5_1_12:95650374-95690042:+|nuORF;nc|ENSG00000028203|Q9HBM0-2|VEZT;ENST00000547997.5_1_12:95650374-95694446:+|nuORF;ENST00000552660.5_1_12:95650374-95694446:+|nuORF;ENSG00000028203|ENST00000436874|VEZT	ENST00000549192.5_1_12:95650374-95690042:+|nuORF	ENST00000549192.5_1_12:95650374-95690042:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	654.6802368164062	2	654.280574	1306.5466	-0.32677	-0.0002138	-0.15933	-0.00010425	-0.4861	-0.00031805	654.2804393674505	45.966	0.80803	45.966	45.636	46.444	0					49	15	5	0	0	0	0.0070192	1	16069	16069		132.13	104.51	1	43467000			7023	1101	4949	4995	6821	6821					-0.09441579329472916
DSDFRKDDFY	10	Unmodified	_DSDFRKDDFY_					0	0	0		ENST00000549192.5_1_12:95650374-95690042:+|nuORF;nc|ENSG00000028203|Q9HBM0-2|VEZT;ENST00000547997.5_1_12:95650374-95694446:+|nuORF;ENST00000552660.5_1_12:95650374-95694446:+|nuORF;ENSG00000028203|ENST00000436874|VEZT	ENST00000549192.5_1_12:95650374-95690042:+|nuORF	ENST00000549192.5_1_12:95650374-95690042:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	436.9229736328125	3	436.522808	1306.5466	-0.057328	-2.5025E-05	-0.060135	-2.625E-05	-0.11746	-5.1275E-05	436.52276163435204	45.966	0.80802	45.966	45.687	46.495	0					53	15	5	0	0	0	0.11034	1	16073	16073		81.923	72.159	1	43139000			7024	1101	4949	4995	6822	6822					-0.09441579329472916
DSDFRKDDFY	10	Unmodified	_DSDFRKDDFY_					0	0	0		ENST00000549192.5_1_12:95650374-95690042:+|nuORF;nc|ENSG00000028203|Q9HBM0-2|VEZT;ENST00000547997.5_1_12:95650374-95694446:+|nuORF;ENST00000552660.5_1_12:95650374-95694446:+|nuORF;ENSG00000028203|ENST00000436874|VEZT	ENST00000549192.5_1_12:95650374-95690042:+|nuORF	ENST00000549192.5_1_12:95650374-95690042:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	654.6802368164062	2	654.280574	1306.5466	-0.88359	-0.00057811	0.23963	0.00015679	-0.64396	-0.00042133	654.280663820375	45.375	0.75584	46.14	45.796	46.552	0.76519					49	14	5	0	0	0	0.011463	1	16900	16900		111.31	83.68	1	36944000			7025	1101	4949	4995	6823	6823					-0.09441579329472916
DSDFRKDDFY	10	Unmodified	_DSDFRKDDFY_					0	0	0		ENST00000549192.5_1_12:95650374-95690042:+|nuORF;nc|ENSG00000028203|Q9HBM0-2|VEZT;ENST00000547997.5_1_12:95650374-95694446:+|nuORF;ENST00000552660.5_1_12:95650374-95694446:+|nuORF;ENSG00000028203|ENST00000436874|VEZT	ENST00000549192.5_1_12:95650374-95690042:+|nuORF	ENST00000549192.5_1_12:95650374-95690042:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	437.257080078125	3	436.522808	1306.5466	-0.33622	-0.00014677	0.051855	2.2636E-05	-0.28437	-0.00012413	436.52277149975697	45.359	0.70609	46.124	45.796	46.503	0.76519					47	13	5	0	0	0	0.011374	1	16901	16901		98.634	85.778	1	46354000			7026	1101	4949	4995	6824	6824					-0.09441579329472916
DSDGELGSRY	10	Unmodified	_DSDGELGSRY_					0	0	0		ENSG00000178761|ENST00000357635|FAM219B	ENSG00000178761|ENST00000357635|FAM219B	ENSG00000178761|ENST00000357635|FAM219B	MULTI-MSMS	A375_MHC_IP_R1	1	549.6714477539062	2	549.738542	1097.46253	-0.8239	-0.00045293	0.18869	0.00010373	-0.63521	-0.0003492	549.7386741056249	30.728	0.60667	30.728	30.503	31.109	0					25	11	3	0	0	0	0.011525	1	9757	9757		117.76	60.039	1	9644100			7027	8175	4950	4996	6825	6825					-0.08230110426370629
DSDGELGSRY	10	Unmodified	_DSDGELGSRY_					0	0	0		ENSG00000178761|ENST00000357635|FAM219B	ENSG00000178761|ENST00000357635|FAM219B	ENSG00000178761|ENST00000357635|FAM219B	MULTI-SECPEP	A375_MHC_IP_R2	2	549.263427734375	2	549.738542	1097.46253	-0.90636	-0.00049826	0.25363	0.00013943	-0.65273	-0.00035883	549.7386214087724	30.167	0.55787	30.886	30.658	31.216	0.71857					23	10	3	0	0	0	0.023912	1	10621	10621		114.19	58.684	1	8742200			7028	8175	4950	4996	6826	6826					-0.08230110426370629
DSDHWAPIHY	10	Unmodified	_DSDHWAPIHY_					0	0	0		nc|ENSG00000001631|O00522-2|KRIT1;ENST00000486261.5_1_7:91830052-91864980:-|nuORF;ENST00000475770.5_1_7:91830052-91864980:-|nuORF;ENSG00000001631|ENST00000394505|KRIT1	nc|ENSG00000001631|O00522-2|KRIT1	nc|ENSG00000001631|O00522-2|KRIT1	MULTI-SECPEP	A375_MHC_IP_R1	1	414.5841369628906	3	414.184238	1239.53089	0.30264	0.00012535	-0.18409	-7.6248E-05	0.11855	4.9102E-05	414.1841166402268	57.879	0.40641	57.879	57.72	58.126	0					14	7	3	0	0	0	0.83086	1	20819	20819		13.615	12.988	1	1334000			7029	851	4951	4997	6827	6827					-0.07929821055859065
DSDHWAPIHY	10	Unmodified	_DSDHWAPIHY_					0	0	0		nc|ENSG00000001631|O00522-2|KRIT1;ENST00000486261.5_1_7:91830052-91864980:-|nuORF;ENST00000475770.5_1_7:91830052-91864980:-|nuORF;ENSG00000001631|ENST00000394505|KRIT1	nc|ENSG00000001631|O00522-2|KRIT1	nc|ENSG00000001631|O00522-2|KRIT1	MULTI-MATCH	A375_MHC_IP_R2	2		3	414.184238	1239.53089	-0.37291	-0.00015445	0.37801	0.00015657	0.0050994	2.1121E-06	414.51867502506525	57.208	0.40871	57.958	57.763	58.171	0.74981	0.039446	0.00047729	NaN	18.373	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1084800			7030	851	4951	4997							-0.07929821055859065
DSDINNRLVY	10	Unmodified	_DSDINNRLVY_					0	0	0		nc|ENSG00000170291|Q8TE02-3|ELP5;nc|ENSG00000170291|Q8TE02-2|ELP5;ENSG00000170291|ENST00000396628|ELP5;nc|ENSG00000170291|Q8TE02-1|ELP5	nc|ENSG00000170291|Q8TE02-3|ELP5	nc|ENSG00000170291|Q8TE02-3|ELP5	MULTI-SECPEP	A375_MHC_IP_R1	1	605.1993408203125	2	604.798934	1207.58332	-0.37243	-0.00022524	0.52967	0.00032035	0.15725	9.5104E-05	604.7995170653173	55	0.50824	55	54.822	55.33	0					11	9	2	0	0	0	0.85215	1	19732	19732		22.658	14.748	1	2226700			7031	7490	4952	4998	6828	6828					-0.012172827129006691
DSDINNRLVY	10	Unmodified	_DSDINNRLVY_					0	0	0		nc|ENSG00000170291|Q8TE02-3|ELP5;nc|ENSG00000170291|Q8TE02-2|ELP5;ENSG00000170291|ENST00000396628|ELP5;nc|ENSG00000170291|Q8TE02-1|ELP5	nc|ENSG00000170291|Q8TE02-3|ELP5	nc|ENSG00000170291|Q8TE02-3|ELP5	MULTI-MATCH	A375_MHC_IP_R2	2		2	604.798934	1207.58332	-0.65821	-0.00039809	0.57968	0.00035059	-0.078534	-4.7497E-05	604.7993905422811	54.514	0.45445	55.265	54.916	55.37	0.75075	0.13243	3.3733E-05	NaN	45.74	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1699300			7032	7490	4952	4998							-0.012172827129006691
DSDLRNDSY	9	Unmodified	_DSDLRNDSY_					0	0	0		nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10	nc|ENSG00000078403|P55197-1|MLLT10	nc|ENSG00000078403|P55197-1|MLLT10	MULTI-MSMS	A375_MHC_IP_R1	1	543.1796875	2	542.730717	1083.44688	-0.84122	-0.00045656	0.088182	4.7859E-05	-0.75304	-0.0004087	542.7307389236292	26.853	0.50204	26.853	26.677	27.179	0					24	9	3	0	0	0	0.030891	1	8115	8115		74.2	53.746	1	14830000			7033	1673	4953	4999	6829	6829					-0.09150396943414307
DSDLRNDSY	9	Unmodified	_DSDLRNDSY_					0	0	0		nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10	nc|ENSG00000078403|P55197-1|MLLT10	nc|ENSG00000078403|P55197-1|MLLT10	MULTI-MSMS	A375_MHC_IP_R2	2	543.179443359375	2	542.730717	1083.44688	-1.217	-0.00066052	0.067625	3.6702E-05	-1.1494	-0.00062382	542.7306930871006	26.373	0.45613	27.033	26.857	27.313	0.65992					18	8	3	0	0	0	0.10637	1	8953	8953		49.527	35.621	1	13102000			7034	1673	4953	4999	6830	6830					-0.09150396943414307
DSDLYFVSH	9	Unmodified	_DSDLYFVSH_					0	0	0		ITPRIP|p.L365F|1|0.61|ENSG00000148841|chr10:104314959-104314959|G/A|missense_variant;ENSG00000148841|ENST00000337478|ITPRIP	ITPRIP|p.L365F|1|0.61|ENSG00000148841|chr10:104314959-104314959|G/A|missense_variant	ITPRIP|p.L365F|1|0.61|ENSG00000148841|chr10:104314959-104314959|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	542.2211303710938	2	541.743096	1081.47164	-0.26757	-0.00014495	0.67417	0.00036523	0.40661	0.00022028	541.7431894353409	69.162	0.35692	69.162	68.969	69.326	0					10	6	2	0	0	0	0.35487	1	25131	25131		29.082	10.935	1	571220			7035	5769	4954	5000	6831	6831					-0.06583717070043349
DSDMQTLVY	9	Oxidation (M)	_DSDM(Oxidation (M))QTLVY_		DSDM(1)QTLVY		DSDM(76)QTLVY	0	0	1		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	A375_MHC_IP_R1	1	544.63427734375	2	544.234247	1086.45394	-0.6823	-0.00037133	-0.035094	-1.9099E-05	-0.71739	-0.00039043	544.2343437909402	65.444	1.4237	65.444	64.8	66.224	0					78	27	4	0	0	0	0.029064	4	23600	23600;23717;23734;23777		75.761	33.921	1	33033000			7036	5831	4955	5001	6832;6833;6834;6835	6832		312			-0.08582800387216594
DSDMQTLVY	9	Oxidation (M)	_DSDM(Oxidation (M))QTLVY_		DSDM(1)QTLVY		DSDM(63)QTLVY	0	0	1		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	A375_MHC_IP_R2	2	544.1766357421875	2	544.234247	1086.45394	-0.83013	-0.00045178	-0.21199	-0.00011537	-1.0421	-0.00056715	544.234229641591	64.841	1.5233	65.579	65.002	66.526	0.73811					88	29	4	0	0	0	0.054426	4	24570	24492;24570;24616;24704		62.573	32.991	1	31447000			7037	5831	4955	5001	6836;6837;6838;6839	6837		312			-0.08582800387216594
DSDMQTLVY	9	Unmodified	_DSDMQTLVY_					0	0	0		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	A375_MHC_IP_R1	1	536.6887817382812	2	536.23679	1070.45903	-0.77553	-0.00041587	-0.1397	-7.4911E-05	-0.91523	-0.00049078	536.236718333088	87.334	1.4245	87.334	86.781	88.205	0					58	27	3	0	0	0	0.033557	1	32078	32078		71.922	27.515	1	16488000			7038	5831	4955	5002	6840	6840					-0.07338496524585025
DSDMQTLVY	9	Unmodified	_DSDMQTLVY_					0	0	0		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	A375_MHC_IP_R2	2	536.6895141601562	2	536.23679	1070.45903	-0.73385	-0.00039352	0.15204	8.153E-05	-0.58181	-0.00031199	536.2368808699702	86.798	1.4208	87.531	86.998	88.419	0.733					66	27	4	0	0	0	0.082375	2	32954	32922;32954		53.833	45.7	1	19747000			7039	5831	4955	5002	6841;6842	6842					-0.07338496524585025
DSDPDLPK	8	Unmodified	_DSDPDLPK_					0	0	0			REV__nc|ENSG00000165066|A6NJ46-2|NKX6-3	REV__nc|ENSG00000165066|A6NJ46-2|NKX6-3	MSMS	A375_MHC_IP_R2	2	443.67913818359375	2	443.711265	885.407977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.152	1	28.831	28.331	29.331	0.67857								0	0	0	0.16876	1	9693	9693		13.906	0	1		+		7040	20544	4956	5003	6843	6843					-0.039310775071271564
DSDPDRLTY	9	Unmodified	_DSDPDRLTY_					0	0	0		ENST00000532320.5_1_11:771189-774104:-|nuORF	ENST00000532320.5_1_11:771189-774104:-|nuORF	ENST00000532320.5_1_11:771189-774104:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	541.6431884765625	2	541.24346	1080.47237	-0.64413	-0.00034863	0.13426	7.2666E-05	-0.50988	-0.00027597	541.2434990165226	40.888	0.40369	40.888	40.609	41.013	0					13	7	2	0	0	0	0.47674	1	14119	14119		29.841	20.457	1	2094400			7041	13183	4957	5004	6844	6844					-0.0646492242099157
DSDPDRLTY	9	Unmodified	_DSDPDRLTY_					0	0	0		ENST00000532320.5_1_11:771189-774104:-|nuORF	ENST00000532320.5_1_11:771189-774104:-|nuORF	ENST00000532320.5_1_11:771189-774104:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	541.6429443359375	2	541.24346	1080.47237	-0.89376	-0.00048374	0.19242	0.00010415	-0.70134	-0.0003796	541.2434971008844	40.216	0.45631	40.991	40.727	41.183	0.77451					12	8	2	0	0	0	0.068071	1	14909	14909		57.249	21.122	1	2006800			7042	13183	4957	5004	6845	6845					-0.0646492242099157
DSDRGLQEGY	10	Unmodified	_DSDRGLQEGY_					0	0	0		ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	MULTI-SECPEP	A375_MHC_IP_R1	1	570.6516723632812	2	570.251817	1138.48908	-0.62429	-0.000356	0.049233	2.8075E-05	-0.57506	-0.00032793	570.2518418402522	30.578	0.45496	30.578	30.351	30.806	0					14	8	2	0	0	0	0.097312	1	9726	9726		79.427	41.453	1	5907200			7043	7989	4958	5005	6846	6846					-0.07462421535024077
DSDRGLQEGY	10	Unmodified	_DSDRGLQEGY_					0	0	0		ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	MULTI-SECPEP	A375_MHC_IP_R2	2	570.6515502929688	2	570.251817	1138.48908	-0.57684	-0.00032894	-0.01788	-1.0196E-05	-0.59472	-0.00033914	570.2517641850075	29.979	0.55893	30.678	30.485	31.044	0.69872					22	10	3	0	0	0	0.027638	1	10510	10510		107.56	76.295	1	5672900			7044	7989	4958	5005	6847	6847					-0.07462421535024077
DSDSCHFNY	9	Carbamidomethyl (C)	_DSDSC(Carbamidomethyl (C))HFNY_	DSDSC(1)HFNY		DSDSC(140)HFNY		0	1	0		ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	MULTI-MSMS	A375_MHC_IP_R1	1	573.103271484375	2	572.703645	1143.39274	-0.52201	-0.00029896	0.29059	0.00016642	-0.23141	-0.00013253	572.7037899442066	38.078	0.60944	38.078	37.71	38.319	0					25	11	3	0	0	0	0.0022058	3	12858	12839;12858;12876		142.08	113.59	1	6939500			7045	1280	4959	5006	6848;6849;6850	6849	5				-0.17322312366650294
DSDSCHFNY	9	Carbamidomethyl (C)	_DSDSC(Carbamidomethyl (C))HFNY_	DSDSC(1)HFNY		DSDSC(140)HFNY		0	1	0		ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	MULTI-MSMS	A375_MHC_IP_R2	2	573.1033325195312	2	572.703645	1143.39274	-0.69126	-0.00039589	0.059751	3.422E-05	-0.63151	-0.00036167	572.7036940761303	37.358	0.6124	38.129	37.867	38.479	0.7709					25	11	3	0	0	0	0.0022058	1	13643	13643		142.08	113.59	1	6351800			7046	1280	4959	5006	6851	6851	5				-0.17322312366650294
DSDSDGPILY	10	Unmodified	_DSDSDGPILY_					0	0	0		nc|ENSG00000112419|O75167-5|PHACTR2;nc|ENSG00000112419|O75167-2|PHACTR2;nc|ENSG00000112419|O75167|PHACTR2;ENSG00000112419|ENST00000440869|PHACTR2	nc|ENSG00000112419|O75167-5|PHACTR2	nc|ENSG00000112419|O75167-5|PHACTR2	MULTI-MSMS	A375_MHC_IP_R1	1	541.6365966796875	2	541.237844	1080.46113	-0.50315	-0.00027232	-0.68487	-0.00037068	-1.188	-0.000643	541.2374794432071	105.56	1.168	105.56	104.99	106.16	0					39	22	2	0	0	0	0.51963	1	38747	38747		26.884	5.137	1	5328000			7047	3086	4960	5007	6852	6852					-0.0758774451512636
DSDSDLQLY	9	Unmodified	_DSDSDLQLY_					0	0	0		nc|ENSG00000116337|Q01433-4|AMPD2;ENST00000526301.5_1_1:110162158-110172443:+|nuORF;nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;ENSG00000116337|ENST00000528667|AMPD2;ENST00000525415.1_1_1:110168821-110169689:+|nuORF	nc|ENSG00000116337|Q01433-4|AMPD2	nc|ENSG00000116337|Q01433-4|AMPD2	MULTI-MSMS	A375_MHC_IP_R1	1	1056.51806640625	1	1055.45276	1054.44548	0.15752	0.00016625	-0.17056	-0.00018002	-0.013043	-1.3766E-05	1055.4523683437876	83.214	0.55881	83.214	82.924	83.483	0					22	10	3	0	0	0	0.026268	1	30472	30472		78.149	7.0158	1	5606600			7048	14557	4961	5008	6853	6853					-0.07956031032176725
DSDSDLQLY	9	Unmodified	_DSDSDLQLY_					0	0	0		nc|ENSG00000116337|Q01433-4|AMPD2;ENST00000526301.5_1_1:110162158-110172443:+|nuORF;nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;ENSG00000116337|ENST00000528667|AMPD2;ENST00000525415.1_1_1:110168821-110169689:+|nuORF	nc|ENSG00000116337|Q01433-4|AMPD2	nc|ENSG00000116337|Q01433-4|AMPD2	MULTI-MATCH	A375_MHC_IP_R2	2		1	1055.45276	1054.44548	0.053268	5.6222E-05	-0.51525	-0.00054382	-0.46198	-0.0004876	1055.4519313026885	82.748	0.45352	83.491	83.195	83.648	0.74294	0.13818	-0.0002026	NaN	78.149	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4433000			7049	14557	4961	5008							-0.07956031032176725
DSDSDQLFY	9	Unmodified	_DSDSDQLFY_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1;ENST00000358133.5_1_1:11994791-12014648:+|nuORF	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	A375_MHC_IP_R1	1	545.6222534179688	2	545.222194	1088.42983	-0.513	-0.0002797	-0.188	-0.0001025	-0.701	-0.0003822	545.2222634352422	91.781	0.75909	91.781	91.401	92.16	0					24	14	2	0	0	0	0.51106	1	33753	33753		19.257	6.7254	1	1558200			7050	1777	4962	5009	6854	6854					-0.11084317549239131
DSDSDQLFY	9	Unmodified	_DSDSDQLFY_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1;ENST00000358133.5_1_1:11994791-12014648:+|nuORF	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	A375_MHC_IP_R2	2	545.2210693359375	2	545.222194	1088.42983	-0.70788	-0.00038595	-0.21409	-0.00011673	-0.92197	-0.00050268	545.2221816602322	91.346	0.6093	92.08	91.767	92.376	0.7345					22	11	3	0	0	0	0.53367	1	34754	34754		18.146	10.236	1	1424200			7051	1777	4962	5009	6855	6855					-0.11084317549239131
DSDSSFTQN	9	Unmodified	_DSDSSFTQN_					0	0	0		ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	MULTI-MSMS	A375_MHC_IP_R1	1	501.1459045410156	2	500.696343	999.378133	-0.35248	-0.00017649	-0.55919	-0.00027998	-0.91168	-0.00045647	500.69605397245385	59.69	0.76282	59.69	59.346	60.109	0					23	14	2	0	0	0	0.6656	1	21425	21425		10.074	0.72649	1	1977100			7052	8602	4963	5010	6856	6856					-0.12158061243133034
DSDSSFTQN	9	Unmodified	_DSDSSFTQN_					0	0	0		ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	500.696343	999.378133	-0.35248	-0.00017649	-0.55919	-0.00027998	-0.91168	-0.00045647	500.69605397245385	59.69	0.76282	59.69	59.346	60.109	0	-0.030384	1.575E-05	NaN	10.074	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1977100			7053	8602	4963	5010							-0.12158061243133034
DSDSSFTQN	9	Unmodified	_DSDSSFTQN_					0	0	0		ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	500.696343	999.378133	-0.97128	-0.00048631	-0.59474	-0.00029778	-1.566	-0.0007841	500.6959892919986	59.003	0.76072	59.75	59.387	60.148	0.74714	0.030384	-1.9844E-05	NaN	10.074	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2147400			7054	8602	4963	5010							-0.12158061243133034
DSDSVPAFY	9	Unmodified	_DSDSVPAFY_					0	0	0		ENSG00000129757|ENST00000440480|CDKN1C;nc|ENSG00000129757|P49918|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	MULTI-SECPEP	A375_MHC_IP_R1	1	1000.8259887695312	1	1000.42582	999.418542	0.19914	0.00019923	-0.22481	-0.0002249	-0.025667	-2.5678E-05	1000.4260566597329	91.721	0.606	91.721	91.35	91.956	0					14	11	2	0	0	0	0.043556	1	33695	33695		77.984	49.497	1	1818500			7055	4211	4964	5011	6857	6857					-0.08119094852713715
DSDSVPAFY	9	Unmodified	_DSDSVPAFY_					0	0	0		ENSG00000129757|ENST00000440480|CDKN1C;nc|ENSG00000129757|P49918|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	MULTI-MATCH	A375_MHC_IP_R2	2		1	1000.42582	999.418542	0.10861	0.00010866	-0.34398	-0.00034413	-0.23537	-0.00023547	1000.4256000076709	91.158	0.5556	91.893	91.616	92.172	0.7345	0.086043	-4.7149E-05	NaN	77.984	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1838900			7056	4211	4964	5011							-0.08119094852713715
DSDYHQEAY	9	Unmodified	_DSDYHQEAY_					0	0	0		nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX;ENST00000588320.1_1_17:40720799-40723580:+|nuORF;ENST00000585403.5_1_17:40719142-40721608:+|nuORF;ENST00000590050.5_1_17:40719112-40721521:+|nuORF	nc|ENSG00000108788|Q9UH92-2|MLX	nc|ENSG00000108788|Q9UH92-2|MLX	MULTI-MSMS	A375_MHC_IP_R1	1	564.6170654296875	2	564.217443	1126.42033	-0.51576	-0.000291	0.037694	2.1268E-05	-0.47807	-0.00026973	564.2173988003335	25.536	0.50875	25.536	25.408	25.917	0					26	9	4	0	0	0	0.082375	2	7472	7472;7533		53.833	42.192	1	19331000			7057	2836	4965	5012	6858;6859	6858					-0.13782085834759528
DSDYHQEAY	9	Unmodified	_DSDYHQEAY_					0	0	0		nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX;ENST00000588320.1_1_17:40720799-40723580:+|nuORF;ENST00000585403.5_1_17:40719142-40721608:+|nuORF;ENST00000590050.5_1_17:40719112-40721521:+|nuORF	nc|ENSG00000108788|Q9UH92-2|MLX	nc|ENSG00000108788|Q9UH92-2|MLX	MULTI-MSMS	A375_MHC_IP_R2	2	564.6168212890625	2	564.217443	1126.42033	-0.92059	-0.00051941	0.024924	1.4062E-05	-0.89566	-0.00050535	564.2174365371906	25.101	0.5101	25.744	25.568	26.078	0.64368					21	9	3	0	0	0	0.094655	1	8352	8352		51.63	32.191	1	14862000			7058	2836	4965	5012	6860	6860					-0.13782085834759528
DSDYPLPFEA	10	Unmodified	_DSDYPLPFEA_					0	0	0			REV__ENSG00000266074|ENST00000675386|BAHCC1	REV__ENSG00000266074|ENST00000675386|BAHCC1	MULTI-SECPEP	A375_MHC_IP_R1	1	385.57342529296875	3	385.173117	1152.49752	0.42857	0.00016507	1.202	0.00046299	1.6306	0.00062806	385.17339420994034	45.833	0.4575	45.833	45.534	45.992	0					16	8	2	0	0	0	0.93961	1	16058	16058		0.56317	0.56317	1	3260400	+		7059	22925	4966	5013	6861	6861					-0.07262867618419477
DSDYRAAIEK	10	Unmodified	_DSDYRAAIEK_					0	0	0			REV__ENST00000462803.5_1_9:82286241-82340056:+|nuORF	REV__ENST00000462803.5_1_9:82286241-82340056:+|nuORF	MSMS	A375_MHC_IP_R1	1	584.4572143554688	2	584.28566	1166.55677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.25	1	121.25	120.75	121.75	0								0	0	0	0.14925	1	45009	45009		19.257	8.4331	1		+		7060	17469	4967	5014	6862	6862					-0.019849716042244836
DSELKFNEY	9	Unmodified	_DSELKFNEY_					0	0	0		ENSG00000189171|ENST00000476133|S100A13	ENSG00000189171|ENST00000476133|S100A13	ENSG00000189171|ENST00000476133|S100A13	MULTI-MSMS	A375_MHC_IP_R1	1	574.212890625	2	572.761486	1143.50842	-0.1963	-0.00011243	-0.44329	-0.0002539	-0.63959	-0.00036634	572.7612457427819	61.991	0.9202	61.991	61.483	62.403	0					43	17	4	0	0	0	0.25276	1	22351	22351		34.102	3.4659	1	16362000			7061	8967	4968	5015	6863	6863					-0.057594652441366634
DSELKFNEY	9	Unmodified	_DSELKFNEY_					0	0	0		ENSG00000189171|ENST00000476133|S100A13	ENSG00000189171|ENST00000476133|S100A13	ENSG00000189171|ENST00000476133|S100A13	MULTI-MSMS	A375_MHC_IP_R2	2	573.7606201171875	2	572.761486	1143.50842	-0.57121	-0.00032717	-0.14632	-8.3807E-05	-0.71753	-0.00041098	572.7614471609126	61.365	0.90595	62.11	61.718	62.624	0.74503					39	17	3	0	0	0	0.035419	1	23330	23330		70.332	37.546	1	13002000			7062	8967	4968	5015	6864	6864					-0.057594652441366634
DSENAERILY	10	Unmodified	_DSENAERILY_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-SECPEP	A375_MHC_IP_R1	1	605.7272338867188	2	605.290942	1208.56733	-0.21867	-0.00013236	0.49786	0.00030135	0.27919	0.00016899	605.2911751444528	56.352	0.4565	56.352	56.041	56.498	0					14	8	2	0	0	0	0.72893	1	20202	20202		40.725	40.725	1	1512000			7063	5872	4969	5016	6865	6865					-0.0286098894978295
DSENAERILY	10	Unmodified	_DSENAERILY_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MSMS	A375_MHC_IP_R2	2	605.7275390625	2	605.290942	1208.56733	-0.4999	-0.00030258	0.57783	0.00034975	0.077931	4.7171E-05	605.7923801921236	55.576	0.40532	56.327	56.135	56.54	0.75075					16	7	3	0	0	0	0.11261	1	21025	21025		69.338	40.257	1	1893900			7064	5872	4969	5016	6866	6866					-0.0286098894978295
DSENQRLAY	9	Unmodified	_DSENQRLAY_					0	0	0		ENST00000447755.1_1_2:196859457-196859526:-|nuORF;nc|ENSG00000112242|O00716-2|E2F3;ENSG00000112242|ENST00000346618|E2F3	ENST00000447755.1_1_2:196859457-196859526:-|nuORF	ENST00000447755.1_1_2:196859457-196859526:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	548.65625	2	548.256902	1094.49925	-0.64128	-0.00035159	-0.1193	-6.5404E-05	-0.76057	-0.00041699	548.2567713958501	31.135	0.45562	31.135	30.959	31.414	0					14	8	2	0	0	0	0.27742	1	9988	9988		51.63	33.495	1	2763900			7065	3063	4970	5017	6867	6867					-0.04421813809813102
DSENQRLAY	9	Unmodified	_DSENQRLAY_					0	0	0		ENST00000447755.1_1_2:196859457-196859526:-|nuORF;nc|ENSG00000112242|O00716-2|E2F3;ENSG00000112242|ENST00000346618|E2F3	ENST00000447755.1_1_2:196859457-196859526:-|nuORF	ENST00000447755.1_1_2:196859457-196859526:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	548.6559448242188	2	548.256902	1094.49925	-0.8061	-0.00044195	0.60795	0.00033331	-0.19815	-0.00010864	548.2575005847887	30.592	0.85932	31.311	31.064	31.923	0.71857					21	16	2	0	0	0	0.094655	1	10747	10747		51.63	27.609	1	2023200			7066	3063	4970	5017	6868	6868					-0.04421813809813102
DSEPNRGISY	10	Unmodified	_DSEPNRGISY_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	A375_MHC_IP_R2	2	569.6636352539062	2	569.262185	1136.50982	-0.35017	-0.00019934	2.3402	0.0013322	1.99	0.0011328	569.2640950891787	31.749	0.65936	32.485	32.198	32.857	0.73691					21	12	2	0	0	0	0.091534	1	11261	11261		65.474	25.524	1	3321400			7067	1791	4971	5018	6869	6869					-0.052978311553715685
DSERFFIRY	9	Unmodified	_DSERFFIRY_					0	0	0		ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	MULTI-MSMS	A375_MHC_IP_R1	1	617.2058715820312	2	616.806562	1231.59857	-0.6689	-0.00041258	0.56459	0.00034824	-0.10431	-6.434E-05	616.8069336141918	67.416	0.66349	67.416	67.091	67.754	0					35	12	4	0	0	0	0.35164	1	24377	24377		34.932	23.292	1	19782000			7068	6056	4972	5019	6870	6870					-0.00796371125056794
DSERFFIRY	9	Unmodified	_DSERFFIRY_					0	0	0		ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	MULTI-MSMS	A375_MHC_IP_R1	1	411.9398498535156	3	411.540134	1231.59857	-0.2164	-8.9058E-05	0.46428	0.00019107	0.24788	0.00010201	411.5403090846657	67.424	0.86406	67.424	67.04	67.904	0					28	16	2	0	0	0	0.048392	1	24378	24378		64.927	53.409	1	23856000			7069	6056	4972	5019	6871	6871					-0.00796371125056794
DSERFFIRY	9	Unmodified	_DSERFFIRY_					0	0	0		ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	MULTI-MSMS	A375_MHC_IP_R2	2	617.2066650390625	2	616.806562	1231.59857	-0.75363	-0.00046484	0.49695	0.00030652	-0.25669	-0.00015833	616.8068485557114	66.64	0.71477	67.376	67.035	67.75	0.73631					39	13	4	0	0	0	0.43945	1	25213	25213		29.841	18.2	1	17459000			7070	6056	4972	5019	6872	6872					-0.00796371125056794
DSERFFIRY	9	Unmodified	_DSERFFIRY_					0	0	0		ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	MULTI-SECPEP	A375_MHC_IP_R2	2	411.2778625488281	3	411.540134	1231.59857	-0.09183	-3.7792E-05	0.29192	0.00012014	0.20009	8.2345E-05	411.54023107531697	66.58	0.76674	67.316	66.983	67.75	0.73631					25	14	2	0	0	0	0.11849	1	25288	25288		64.927	54.028	1	21583000			7071	6056	4972	5019	6873	6873					-0.00796371125056794
DSESSGVLY	9	Unmodified	_DSESSGVLY_					0	0	0		nc|ENSG00000176390|Q8IUI8-2|CRLF3;ENSG00000176390|ENST00000324238|CRLF3	nc|ENSG00000176390|Q8IUI8-2|CRLF3	nc|ENSG00000176390|Q8IUI8-2|CRLF3	MULTI-MSMS	A375_MHC_IP_R2	2	958.4904174804688	1	956.420733	955.413456	-0.52029	-0.00049762	-0.1051	-0.00010052	-0.62539	-0.00059813	956.4205926023832	59.048	1.418	59.795	59.286	60.704	0.74714					65	27	4	0	0	0	0.17328	1	22307	22307		39.957	16.809	1	34399000			7072	8017	4973	5020	6874	6874					-0.06603398715310504
DSESSGVLY	9	Unmodified	_DSESSGVLY_					0	0	0		nc|ENSG00000176390|Q8IUI8-2|CRLF3;ENSG00000176390|ENST00000324238|CRLF3	nc|ENSG00000176390|Q8IUI8-2|CRLF3	nc|ENSG00000176390|Q8IUI8-2|CRLF3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	956.420733	955.413456	0.086092	8.234E-05	-0.026572	-2.5414E-05	0.05952	5.6927E-05	956.4207294680482	59.718	1.3211	59.718	59.245	60.566	0	-0.038336	3.7331E-05	NaN	39.957	68	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40704000			7073	8017	4973	5020							-0.06603398715310504
DSETLQFLALW	11	Unmodified	_DSETLQFLALW_					0	0	0			REV__ENSG00000187741|ENST00000389301|FANCA	REV__ENSG00000187741|ENST00000389301|FANCA	MSMS	A375_MHC_IP_R2	2	661.8367919921875	2	661.834985	1321.65542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.336	1	98.091	97.591	98.591	0.75586								0	0	0	0.16179	1	36945	36945		9.3831	0.63772	1		+		7074	22042	4974	5021	6875	6875					0.007456316407797203
DSEYVRAVY	9	Unmodified	_DSEYVRAVY_					0	0	0		nc|ENSG00000145476|Q6ZWL3-2|CYP4V2;ENSG00000145476|ENST00000378802|CYP4V2;ENST00000507209.5_1_4:187118658-187122526:+|nuORF	nc|ENSG00000145476|Q6ZWL3-2|CYP4V2	nc|ENSG00000145476|Q6ZWL3-2|CYP4V2	MULTI-MSMS	A375_MHC_IP_R1	1	551.6641845703125	2	551.264196	1100.51384	-0.47605	-0.00026243	0.14303	7.885E-05	-0.33301	-0.00018358	551.2642759100521	51.109	0.60896	51.109	50.764	51.373	0					20	11	2	0	0	0	0.02114	1	18111	18111		82.529	44.555	1	5410700			7075	5562	4975	5022	6876	6876					-0.03239741661673179
DSEYVRAVY	9	Unmodified	_DSEYVRAVY_					0	0	0		nc|ENSG00000145476|Q6ZWL3-2|CYP4V2;ENSG00000145476|ENST00000378802|CYP4V2;ENST00000507209.5_1_4:187118658-187122526:+|nuORF	nc|ENSG00000145476|Q6ZWL3-2|CYP4V2	nc|ENSG00000145476|Q6ZWL3-2|CYP4V2	MULTI-MSMS	A375_MHC_IP_R2	2	551.6638793945312	2	551.264196	1100.51384	-0.93275	-0.00051419	0.37989	0.00020942	-0.55286	-0.00030477	551.2644310340232	50.468	0.65985	51.222	50.955	51.615	0.75406					31	12	4	0	0	0	0.0092471	1	18955	18955		103.35	72.717	1	4075600			7076	5562	4975	5022	6877	6877					-0.03239741661673179
DSFPELDPD	9	Unmodified	_DSFPELDPD_					0	0	0			REV__ENSG00000124215|ENST00000348616|CDH26	REV__ENSG00000124215|ENST00000348616|CDH26	MSMS	A375_MHC_IP_R2	2	517.6818237304688	2	517.719287	1033.42402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.138	1	86.871	86.371	87.371	0.733								0	0	0	0.14905	1	32757	32757		23.148	1.4018	1		+		7077	18285	4976	5023	6878	6878					-0.09135416060917123
DSFQTHLKT	9	Unmodified	_DSFQTHLKT_					0	0	0		ENSG00000198795|ENST00000361524|ZNF521	ENSG00000198795|ENST00000361524|ZNF521	ENSG00000198795|ENST00000361524|ZNF521	MULTI-MSMS	A375_MHC_IP_R2	2	538.70556640625	2	538.772188	1075.52982	-1.0112	-0.0005448	0.0096215	5.1838E-06	-1.0016	-0.00053962	538.772202643172	54.897	2.1857	55.648	54.763	56.949	0.75075					94	42	3	0	0	0	0.44024	1	20955	20955		22.736	1.1993	1	12911000			7078	9328	4977	5024	6879	6879					-0.004920354247587966
DSFTQGFGE	9	Unmodified	_DSFTQGFGE_					0	0	0		ENSG00000169957|ENST00000380412|ZNF768	ENSG00000169957|ENST00000380412|ZNF768	ENSG00000169957|ENST00000380412|ZNF768	MULTI-SECPEP	A375_MHC_IP_R1	1	987.0460205078125	1	987.405417	986.39814	-0.06066	-5.9896E-05	-1.3562	-0.0013391	-1.4169	-0.001399	987.4031828012628	39.752	0.40575	39.752	39.491	39.896	0					13	7	2	0	0	0	0.53748	1	13619	13619		30.637	3.7529	1	2790100			7079	7456	4978	5025	6880	6880					-0.09560265512504884
DSFTQGFGE	9	Unmodified	_DSFTQGFGE_					0	0	0		ENSG00000169957|ENST00000380412|ZNF768	ENSG00000169957|ENST00000380412|ZNF768	ENSG00000169957|ENST00000380412|ZNF768	MULTI-SECPEP	A375_MHC_IP_R2	2	987.5465087890625	1	987.405417	986.39814	-0.19142	-0.00018901	-1.4398	-0.0014217	-1.6313	-0.0016107	987.4032542419969	39.114	0.56231	39.888	39.504	40.067	0.77451					15	10	2	0	0	0	0.69507	1	14370	14370		13.906	4.5586	1	3627400			7080	7456	4978	5025	6881	6881					-0.09560265512504884
DSGDGCDDNGD	11	Unmodified	_DSGDGCDDNGD_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MSMS	A375_MHC_IP_R1	1	534.7462768554688	2	535.154182	1068.29381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.78	1	136.78	136.28	137.28	0								0	0	0	0.16355	1	52675	52675		0.26902	0.26902	1		+		7081	18241	4979	5026	6882	6882					-0.23760380122189417
DSGDGCDDQND	11	Unmodified	_DSGDGCDDQND_					0	0	0			REV__nc|ENSG00000197558|A2VEC9|SSPOP	REV__nc|ENSG00000197558|A2VEC9|SSPOP	MSMS	A375_MHC_IP_R1	1	570.70361328125	2	570.672739	1139.33093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.29	1	135.29	134.79	135.79	0								0	0	0	0.16341	1	52164	52164		0.96228	0.96228	1		+		7082	27442	4980	5027	6883	6883					-0.23316708576430756
DSGNSEPVTYY	11	Unmodified	_DSGNSEPVTYY_					0	0	0		nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MULTI-MSMS	A375_MHC_IP_R1	1	616.6591186523438	2	616.259308	1230.50406	-0.22918	-0.00014124	-0.3406	-0.0002099	-0.56978	-0.00035113	616.2596462898881	62.527	1.0757	62.527	62.148	63.223	0					44	20	4	0	0	0	0.63737	1	22558	22558		20.415	1.1575	1	6389200			7083	5339	4981	5028	6884	6884					-0.10196974457676333
DSGQATRRINW	11	Unmodified	_DSGQATRRINW_					0	0	0		ENST00000460350.5_3_3:145924377-145968784:-|nuORF	ENST00000460350.5_3_3:145924377-145968784:-|nuORF	ENST00000460350.5_3_3:145924377-145968784:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	434.8971252441406	3	435.221575	1302.6429	-0.24964	-0.00010865	1.1201	0.0004875	0.87047	0.00037885	435.221998448568	31.221	0.35461	31.221	31.009	31.363	0					12	6	3	0	0	0	0.99331	1	9984	9984		1.1098	0	1	1946800			7084	12166	4982	5029	6885	6885					0.0036803302116368286
DSGQLWGETL	10	Unmodified	_DSGQLWGETL_					0	0	0			REV__ENSG00000050555|ENST00000361069|LAMC3	REV__ENSG00000050555|ENST00000361069|LAMC3	MULTI-MSMS	A375_MHC_IP_R1	1	553.7159423828125	2	553.261653	1104.50875	-0.1178	-6.5176E-05	-0.041549	-2.2988E-05	-0.15935	-8.8164E-05	553.2614952994713	48.658	0.55729	48.658	48.375	48.933	0					25	10	3	0	0	0	0.57505	1	17286	17286		22.736	8.8302	1	5061500	+		7085	16388	4983	5030	6886	6886					-0.03932045524265959
DSGYYNFY	8	Unmodified	_DSGYYNFY_					0	0	0			REV__tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1	REV__tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	515.2192993164062	2	514.70344	1027.39233	-0.7985	-0.00041099	-0.40263	-0.00020724	-1.2011	-0.00061823	514.703257390647	39.693	0.45691	40.467	40.219	40.676	0.77451					12	8	2	0	0	0	0.77702	1	14707	14707		5.7604	0.52976	1	3156400	+		7086	28459	4984	5031	6887	6887					-0.12027364024174858
DSHEDPNEYD	10	Unmodified	_DSHEDPNEYD_					0	0	0			REV__nc|ENSG00000095585|Q8WV28-3|BLNK	REV__nc|ENSG00000095585|Q8WV28-3|BLNK	MULTI-SECPEP	A375_MHC_IP_R1	1	407.9292907714844	3	407.48279	1219.42654	-0.068288	-2.7826E-05	0.78765	0.00032096	0.71937	0.00029313	407.4830407507447	20.7	0.61255	20.7	20.283	20.895	0					27	11	4	0	0	0	0.94516	1	5302	5302		1.7423	1.583	1	2079300	+		7087	16995	4985	5032	6888	6888					-0.1743961239390046
DSHLDSVGY	9	Unmodified	_DSHLDSVGY_					0	0	0			REV__ENSG00000109323|ENST00000647097|MANBA	REV__ENSG00000109323|ENST00000647097|MANBA	MULTI-MSMS	A375_MHC_IP_R1	1	497.12109375	2	496.719621	991.42469	-0.37755	-0.00018754	0.39859	0.00019799	0.021032	1.0447E-05	496.7197743090819	37.105	0.96375	37.105	36.592	37.556	0					34	18	2	0	0	0	0.43185	1	12357	12357		23.148	0	1	19507000	+		7088	17577	4986	5033	6889	6889					-0.07136576621178392
DSHLITTLL	9	Unmodified	_DSHLITTLL_					0	0	0			REV__ENSG00000083642|ENST00000315596|PDS5B	REV__ENSG00000083642|ENST00000315596|PDS5B	MSMS	A375_MHC_IP_R2	2	506.69622802734375	2	506.787307	1011.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.098	1	95.848	95.348	96.348	0.75045								0	0	0	0.1535	1	36130	36130		15.847	1.0089	1		+		7089	16808	4987	5034	6890	6890					0.05474323240423473
DSIRQVLFDR	10	Unmodified	_DSIRQVLFDR_					0	0	0			REV__nc|ENSG00000197226|Q66K14|TBC1D9B;REV__ENSG00000109436|ENST00000442267|TBC1D9	REV__ENSG00000109436|ENST00000442267|TBC1D9	MSMS	A375_MHC_IP_R2	2	416.94183349609375	3	416.894688	1247.66223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.59	1	25.234	24.734	25.734	0.64368								0	0	0	0.15089	1	8101	8101		10.315	2.0288	1		+		7090	17578;27440	4988	5035	6891	6891					0.04830989312040401
DSIWREVV	8	Unmodified	_DSIWREVV_					0	0	0			REV__ENST00000584580.1_1_17:45912634-45914483:+|nuORF	REV__ENST00000584580.1_1_17:45912634-45914483:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.63983154296875	2	502.263999	1002.51345	0.047723	2.3969E-05	2.8997	0.0014564	2.9474	0.0014804	502.26409489401163	38.891	0.30394	38.891	38.73	39.033	0					7	5	2	0	0	0	0.8957	1	13272	13272		21.747	2.3076	1	820720	+		7091	19253	4989	5036	6892	6892					0.012288834091464196
DSKHFTKFSF	10	Unmodified	_DSKHFTKFSF_					0	0	0		tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	415.6082458496094	3	415.208384	1242.60332	-0.22597	-9.3824E-05	-0.17499	-7.2656E-05	-0.40096	-0.00016648	415.2082888159347	49.162	0.65803	49.919	49.639	50.297	0.75737					31	12	3	0	0	0	0.69875	1	18467	18467		12.856	2.7054	1	3996200			7092	29818	4990	5037	6893	6893					-0.008274869822798792
DSKHFTKFSF	10	Unmodified	_DSKHFTKFSF_					0	0	0		tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	415.208384	1242.60332	-0.22597	-9.3824E-05	-0.17499	-7.2656E-05	-0.40096	-0.00016648	415.2082888159347	49.162	0.65803	49.919	49.639	50.297	0.75737	-0.039945	7.9214E-05	NaN	12.856	31	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3996200			7093	29818	4990	5037							-0.008274869822798792
DSKQKSDEY	9	Unmodified	_DSKQKSDEY_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	550.648681640625	2	550.248743	1098.48293	-0.60636	-0.00033365	-0.081722	-4.4967E-05	-0.68808	-0.00037862	550.248773516815	34.328	0.55478	34.328	34.103	34.657	0					20	10	3	0	0	0	0.41434	1	11314	11314		32.786	3.7041	1	5068300	+		7094	20766	4991	5038	6894	6894					-0.062369397665634096
DSKQKSDEY	9	Unmodified	_DSKQKSDEY_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6483154296875	2	550.248743	1098.48293	-1.3244	-0.00072874	0.36478	0.00020072	-0.9596	-0.00052802	550.2490507407032	33.705	0.40457	34.457	34.298	34.702	0.75225					17	7	3	0	0	0	0.31606	1	12113	12113		32.786	0	1	3380500	+		7095	20766	4991	5038	6895	6895					-0.062369397665634096
DSKSKYVLDG	10	Unmodified	_DSKSKYVLDG_					0	0	0		ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	MULTI-SECPEP	A375_MHC_IP_R2	2	370.94488525390625	3	371.192511	1110.5557	0.080171	2.9759E-05	0.73505	0.00027285	0.81522	0.0003026	371.19279152298884	20.046	0.81087	20.656	20.197	21.008	0.61029					28	15	2	0	0	0	0.8125	1	6212	6212		11.518	6.4704	1	5201400			7096	2203	4992	5039	6896	6896					0.004848140268450152
DSLARSDLQ	9	Unmodified	_DSLARSDLQ_					0	0	0			REV__MAPK6|p.P382S|1|0.31|ENSG00000069956|chr15:52063978-52063978|C/T|missense_variant	REV__MAPK6|p.P382S|1|0.31|ENSG00000069956|chr15:52063978-52063978|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	503.1920166015625	2	502.753995	1003.49344	-0.63603	-0.00031977	-3.8242	-0.0019227	-4.4603	-0.0022424	502.7510358442187	76.761	0.45412	77.502	77.301	77.755	0.74052					12	8	2	0	0	0	0.32092	1	29238	29238		29.082	0	1	454420	+		7097	26985	4993	5040	6897	6897					-0.00816912321477048
DSLLVRPS	8	Unmodified	_DSLLVRPS_					0	0	0			REV__nc|ENSG00000185652|P20783|NTF3	REV__nc|ENSG00000185652|P20783|NTF3	MULTI-MSMS	A375_MHC_IP_R1	1	443.6612243652344	2	443.753267	885.491981	0.14626	6.4901E-05	0.10403	4.6164E-05	0.25029	0.00011107	443.7532912883786	47.9	0.35352	47.9	47.768	48.122	0					9	6	2	0	0	0	0.75801	1	16833	16833		18.146	1.9972	1	521110	+		7098	21907	4994	5041	6898	6898					0.04465498380432109
DSLTVWCQY	9	Unmodified	_DSLTVWCQY_					0	0	0		ENSG00000186407|ENST00000392619|CD300E	ENSG00000186407|ENST00000392619|CD300E	ENSG00000186407|ENST00000392619|CD300E	MSMS	A375_MHC_IP_R1	1	557.6876831054688	2	557.747324	1113.4801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.604	1	30.604	30.104	31.104	0								0	0	0	0.1535	1	9742	9742		15.847	1.2655	1				7099	8745	4995	5042	6899	6899					-0.07210486425083218
DSLYVNFNGE	10	Unmodified	_DSLYVNFNGE_					0	0	0			REV__ENSG00000136542|ENST00000259056|GALNT5	REV__ENSG00000136542|ENST00000259056|GALNT5	MULTI-MSMS	A375_MHC_IP_R2	2	580.674560546875	2	579.259111	1156.50367	-0.38126	-0.00022085	0.017571	1.0178E-05	-0.36369	-0.00021067	579.2592256994155	65.416	1.0668	66.154	65.715	66.782	0.73811					61	20	5	0	0	0	0.70179	1	24846	24846		11.495	11.495	1	9537600	+		7100	18947	4996	5043	6900	6900					-0.06832349386922942
DSMGEVSYDK	10	Unmodified	_DSMGEVSYDK_					0	0	0			REV__nc|ENSG00000213780|Q92759-2|GTF2H4	REV__nc|ENSG00000213780|Q92759-2|GTF2H4	MULTI-MSMS	A375_MHC_IP_R1	1	566.1114501953125	2	565.737154	1129.45975	-0.59847	-0.00033858	0.93556	0.00052928	0.33709	0.0001907	566.2376323717418	85.743	0.15172	85.743	85.616	85.768	0					4	2	2	0	0	0	0.70925	1	31381	31381		8.1555	1.4324	1	552300	+		7101	22629	4997	5044	6901	6901					-0.09979701875545288
DSMSYGMPNQ	10	Unmodified	_DSMSYGMPNQ_					0	0	0		nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-SECPEP	A375_MHC_IP_R1	1	377.54791259765625	3	377.147808	1128.42159	0.4094	0.00015441	-0.51257	-0.00019331	-0.10317	-3.8909E-05	377.1476804030225	28.515	0.50689	28.515	28.288	28.795	0					27	9	4	0	0	0	0.9269	1	8794	8794		1.7423	0	1	17133000			7102	5625	4998	5045	6902	6902					-0.13747911061841478
DSMWRLHLE	9	Unmodified	_DSMWRLHLE_					0	0	0			REV__CECR2|p.P303L|1|0.24|ENSG00000099954|chr22:17511850-17511850|C/T|missense_variant	REV__CECR2|p.P303L|1|0.24|ENSG00000099954|chr22:17511850-17511850|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	396.2889099121094	3	396.193969	1185.56008	-0.72398	-0.00028684	1.1223	0.00044464	0.39829	0.0001578	396.1943446107974	37.145	0.50565	37.916	37.615	38.12	0.7709					12	9	2	0	0	0	0.79535	1	13615	13615		3.8763	3.1787	1	2202600	+		7103	15633	4999	5046	6903	6903					-0.025280000312250195
DSMWRLHLE	9	Unmodified	_DSMWRLHLE_					0	0	0			REV__CECR2|p.P303L|1|0.24|ENSG00000099954|chr22:17511850-17511850|C/T|missense_variant	REV__CECR2|p.P303L|1|0.24|ENSG00000099954|chr22:17511850-17511850|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	396.193969	1185.56008	-0.25672	-0.00010171	1.7265	0.00068402	1.4698	0.00058231	396.1946647614172	37.938	0.30636	37.938	37.812	38.118	0	0.011057	0.0004796	NaN	1.9064	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2094000	+		7104	15633	4999	5046							-0.025280000312250195
DSPSPISSFF	10	Unmodified	_DSPSPISSFF_					0	0	0		ENSG00000125430|ENST00000360954|HS3ST3B1	ENSG00000125430|ENST00000360954|HS3ST3B1	ENSG00000125430|ENST00000360954|HS3ST3B1	MULTI-SECPEP	A375_MHC_IP_R1	1	542.1531372070312	2	542.253297	1082.49204	-0.73289	-0.00039741	2.6551	0.0014397	1.9222	0.0010423	542.2546210243312	19.546	0.43628	19.546	19.238	19.674	0					11	8	2	0	0	0	0.78945	1	4885	4885		19.257	4.4187	1	4869800			7105	3960	5000	5047	6904	6904					-0.04590546410236129
DSPVACHFEV	10	Unmodified	_DSPVACHFEV_					0	0	0			REV__ENSG00000142798|ENST00000374695|HSPG2	REV__ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	A375_MHC_IP_R2	2	552.644775390625	2	552.244949	1102.47534	-1.0802	-0.00059655	0.96515	0.000533	-0.11507	-6.3548E-05	552.2452347432401	60.865	0.60597	61.61	61.364	61.97	0.74503					29	11	3	0	0	0	0.6806	1	23040	23040		14.838	3.198	1	3383800	+		7106	19325	5001	5048	6905	6905					-0.07179370567837395
DSQTSVCITI	10	Unmodified	_DSQTSVCITI_					0	0	0		nc|ENSG00000079308|Q9HBL0-2|TNS1;chr2:217900512-217903603|175|11.37|0.18|6.02|-|ENST00000310858|TNS1,TNS1;chr2:217900512-217905296|331|13.19|0.66|4.33|-|ENST00000413554|TNS1,TNS1;nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1	nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-2|TNS1	MULTI-MSMS	A375_MHC_IP_R2	2	534.702392578125	2	533.757889	1065.50123	-0.8053	-0.00042984	-1.4432	-0.0007703	-2.2485	-0.0012001	534.2587851951671	82.19	0.96486	82.933	82.482	83.447	0.74293					45	18	4	0	0	0	0.60556	1	31121	31121		20.454	5.6154	1	2530900			7107	461	5002	5049	6906	6906					-0.028905211162282285
DSRENFFPVTV	11	Unmodified	_DSRENFFPVTV_					0	0	0		ENSG00000099991|ENST00000263119|CABIN1;nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENST00000485008.1_1_22:24563230-24569157:+|nuORF	ENSG00000099991|ENST00000263119|CABIN1	ENSG00000099991|ENST00000263119|CABIN1	MULTI-MSMS	A375_MHC_IP_R2	2	437.95062255859375	3	437.550698	1309.63027	-0.87999	-0.00038504	0.30045	0.00013146	-0.57953	-0.00025358	437.5508021117641	53.109	0.40858	53.86	53.739	54.147	0.75105					14	7	2	0	0	0	0.72851	1	20108	20108		10.315	0	1	2304500			7108	2097	5003	5050	6907	6907					-0.012164231617816768
DSREQLKY	8	Unmodified	_DSREQLKY_					0	0	0			REV__ENST00000461132.1_1_9:94871020-94877616:-|nuORF	REV__ENST00000461132.1_1_9:94871020-94877616:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	519.73193359375	2	519.764363	1037.51417	-0.58653	-0.00030486	3.1848	0.0016553	2.5983	0.0013505	519.7660779106855	42.929	0.30312	43.701	43.523	43.826	0.7724					9	5	2	0	0	0	0.77603	1	15960	15960		9.3474	2.0582	1	1334800	+		7109	16922	5004	5051	6908	6908					-0.0030832194181584782
DSREQLKY	8	Unmodified	_DSREQLKY_					0	0	0			REV__ENST00000461132.1_1_9:94871020-94877616:-|nuORF	REV__ENST00000461132.1_1_9:94871020-94877616:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	519.764363	1037.51417	-0.50433	-0.00026213	5.4081	0.0028109	4.9038	0.0025488	519.7671321106025	43.779	0.35682	43.779	43.502	43.859	0	0.038808	0.0013971	NaN	9.3474	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1713900	+		7110	16922	5004	5051							-0.0030832194181584782
DSRHQAFLH	9	Unmodified	_DSRHQAFLH_					0	0	0			REV__ENST00000526008.5_1_19:17949989-17958765:-|nuORF	REV__ENST00000526008.5_1_19:17949989-17958765:-|nuORF	MSMS	A375_MHC_IP_R2	2	370.5854187011719	3	370.852823	1109.53664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.195	1	58.944	58.444	59.444	0.74894								0	0	0	0.15486	1	22013	22013		0.96228	0.0979	1		+		7111	25767	5005	5052	6909	6909					-0.013746777535288857
DSRSRSLRPDP	11	Unmodified	_DSRSRSLRPDP_					0	0	0			REV__ENSG00000107140|ENST00000336395|TESK1	REV__ENSG00000107140|ENST00000336395|TESK1	MULTI-SECPEP	A375_MHC_IP_R2	2	429.9660339355469	3	429.225097	1284.65346	-0.66272	-0.00028445	1.5859	0.00068069	0.92314	0.00039624	429.22578353996926	25.786	0.35693	26.446	26.245	26.602	0.65992					9	6	2	0	0	0	0.99778	1	8712	8712		3.8459	1.4111	1	2761900	+		7112	17474	5006	5053	6910	6910					0.02252015675549046
DSRTKSYY	8	Unmodified	_DSRTKSYY_					0	0	0		tr|U7SRI4|U7SRI4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01614PE=4SV=1	tr|U7SRI4|U7SRI4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01614PE=4SV=1	tr|U7SRI4|U7SRI4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01614PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	509.6728210449219	2	510.243264	1018.47197	-0.99972	-0.0005101	0.33113	0.00016896	-0.66859	-0.00034114	510.24357197065444	33.268	0.50965	34.02	33.686	34.196	0.75225					13	9	2	0	0	0	0.93661	1	11959	11959		15.847	0	1	1465200			7113	29611	5007	5054	6911	6911					-0.036522973501973865
DSSESSLSWA	10	Unmodified	_DSSESSLSWA_					0	0	0			REV__ENST00000569733.6_1_16:67575293-67580037:+|nuORF	REV__ENST00000569733.6_1_16:67575293-67580037:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	535.4620971679688	2	534.727643	1067.44073	-1.2955	-0.00069272	0.59284	0.00031701	-0.70263	-0.00037572	534.7277591706556	52.772	0.75999	53.523	53.133	53.893	0.75105					29	14	3	0	0	0	0.88918	1	19862	19862		8.7454	8.7454	1	4597600	+		7114	16334	5008	5055	6912	6912					-0.09028915174917529
DSSGPERIL	9	Unmodified	_DSSGPERIL_					0	0	0		nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978|HNRNPK	nc|ENSG00000165119|P61978|HNRNPK	MULTI-SECPEP	A375_MHC_IP_R2	2	487.6002502441406	2	487.251089	972.487624	-0.47597	-0.00023192	-1.5344	-0.00074761	-2.0103	-0.00097953	487.25081384938085	46.353	0.71155	47.118	46.704	47.416	0.76519					27	13	3	0	0	0	0.56537	1	17326	17326		17.113	0	1	2380000			7115	6916	5009	5056	6913	6913					0.0002798916684696451
DSSIDTHQY	9	Unmodified	_DSSIDTHQY_					0	0	0		ENSG00000143970|ENST00000435504|ASXL2;ASXL2|p.E1056K|1|0.7|ENSG00000143970|chr2:25743171-25743171|C/T|missense_variant	ENSG00000143970|ENST00000435504|ASXL2	ENSG00000143970|ENST00000435504|ASXL2	MULTI-SECPEP	A375_MHC_IP_R2	2	532.6980590820312	2	533.22781	1064.44107	-0.66994	-0.00035723	0.54002	0.00028795	-0.12992	-6.9275E-05	533.2280056003415	27.343	0.40734	28.021	27.843	28.251	0.67857					10	7	2	0	0	0	0.71341	1	9293	9293		8.7454	0.15213	1	990340			7116	5452	5010	5057	6914	6914					-0.0885749545507224
DSSLGRIAQY	10	Unmodified	_DSSLGRIAQY_					0	0	0		ENSG00000171823|ENST00000339235|FBXL14	ENSG00000171823|ENST00000339235|FBXL14	ENSG00000171823|ENST00000339235|FBXL14	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1485595703125	2	555.28292	1108.55129	-0.7675	-0.00042618	-0.50833	-0.00028227	-1.2758	-0.00070845	555.2824856137875	27.671	0.30236	28.35	28.251	28.553	0.67857					8	5	2	0	0	0	0.86608	1	9565	9565		15.248	0	1	1391200			7117	7645	5011	5058	6915	6915					0.001353496039428137
DSSLHSVLY	9	Unmodified	_DSSLHSVLY_					0	0	0			REV__ENST00000456813.1_1_1:39325817-39341821:+|nuORF	REV__ENST00000456813.1_1_1:39325817-39341821:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	510.1751403808594	2	510.753464	1019.49238	-0.69845	-0.00035674	-0.12395	-6.3306E-05	-0.8224	-0.00042004	510.7534354686093	42.029	0.5626	42.804	42.555	43.118	0.77451					24	10	3	0	0	0	0.16229	1	15637	15637		39.957	0	1	6958300	+		7118	24938	5012	5059	6916	6916					-0.01659126690390167
DSSVWVTLG	9	Unmodified	_DSSVWVTLG_					0	0	0			REV__PTCH2|p.S1046Rfs*5|1|0.12|ENSG00000117425|chr1:44823348-44823364|GCCCGCAGGTTCCGGCT/-|frameshift_variant	REV__PTCH2|p.S1046Rfs*5|1|0.12|ENSG00000117425|chr1:44823348-44823364|GCCCGCAGGTTCCGGCT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	482.64239501953125	2	482.242732	962.470912	-0.68741	-0.0003315	0.035121	1.6937E-05	-0.65229	-0.00031456	482.24269958497956	97.632	0.76314	98.388	98.077	98.84	0.75587					25	14	2	0	0	0	0.46038	1	37067	37067		21.747	0	1	1651300	+		7119	18007	5013	5060	6917	6917					-0.011825117190710444
DSTDQWEKF	9	Unmodified	_DSTDQWEKF_					0	0	0		CON__Q2UVX4	CON__Q2UVX4	CON__Q2UVX4	MULTI-MSMS	A375_MHC_IP_R2	2	579.1978149414062	2	578.251286	1154.48802	-0.355	-0.00020528	-0.31645	-0.00018299	-0.67145	-0.00038827	578.2509789166705	48.933	0.91386	49.69	49.282	50.196	0.75737					41	17	3	0	0	0	0.61998	1	18370	18370		13.906	4.5229	1	4325600		+	7120	614	5014	5061	6918	6918					-0.08304635903959934
DSTGIDLHEF	10	Unmodified	_DSTGIDLHEF_					0	0	0		ENSG00000048991|ENST00000683871|R3HDM1;nc|ENSG00000048991|Q15032-3|R3HDM1;nc|ENSG00000048991|Q15032|R3HDM1;nc|ENSG00000048991|Q15032-4|R3HDM1;nc|ENSG00000048991|Q15032-2|R3HDM1;ENST00000552428.6_1_12:57691628-57693946:-|nuORF;R3HDM1|p.S222Cfs*7|1|0.37|ENSG00000048991|chr2:135631967-135631968|TC/-|frameshift_variant;ENST00000551465.1_1_12:57691871-57704220:-|nuORF;nc|ENSG00000172995|Q9UBL0-4|ARPP21;nc|ENSG00000172995|Q9UBL0|ARPP21;nc|ENSG00000172995|Q9UBL0-3|ARPP21;ENSG00000172995|ENST00000684406|ARPP21;nc|ENSG00000179912|Q9Y2K5|R3HDM2;ENSG00000179912|ENST00000402412|R3HDM2	ENSG00000048991|ENST00000683871|R3HDM1;nc|ENSG00000172995|Q9UBL0-4|ARPP21;nc|ENSG00000179912|Q9Y2K5|R3HDM2	ENSG00000048991|ENST00000683871|R3HDM1	MULTI-MSMS	A375_MHC_IP_R2	2	567.6582641601562	2	567.259111	1132.50367	-0.34588	-0.0001962	-0.095714	-5.4295E-05	-0.44159	-0.0002505	567.2590652919448	125.01	0.30329	125.34	125.15	125.45	0.32968					10	5	3	0	0	0	0.70496	1	48558	48558		10.074	0.6908	1	17354000			7121	1218;7758;8261	5015	5062	6919	6919					-0.05728349386890841
DSTLAMCG	8	Unmodified	_DSTLAMCG_					0	0	0		ENSG00000226372|ENST00000441525|DCAF8L1	ENSG00000226372|ENST00000441525|DCAF8L1	ENSG00000226372|ENST00000441525|DCAF8L1	MSMS	A375_MHC_IP_R2	2	399.1305847167969	2	399.162039	796.309525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.352	1	98.108	97.608	98.608	0.75586								0	0	0	0.16876	1	36951	36951		2.5775	0	1				7122	9704	5016	5063	6920	6920					-0.09677720348179264
DSTMDEELNM	10	Unmodified	_DSTMDEELNM_					0	0	0			REV__nc|ENSG00000085563|P08183-2|ABCB1	REV__nc|ENSG00000085563|P08183-2|ABCB1	MSMS	A375_MHC_IP_R2	2	592.6514282226562	2	592.725929	1183.4373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.02	1	89.752	89.252	90.252	0.7318								0	0	0	0.15557	1	33881	33881		2.7352	0.67545	1		+		7123	27127	5017	5064	6921	6921					-0.14707669335462015
DSTPELSTPF	10	Unmodified	_DSTPELSTPF_					0	0	0			REV__nc|ENSG00000161180|Q8IYX3-1|CCDC116	REV__nc|ENSG00000161180|Q8IYX3-1|CCDC116	MSMS	A375_MHC_IP_R2	2	547.3027954101562	2	547.256037	1092.49752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.316	1	20.926	20.426	21.426	0.61029								0	0	0	0.15308	1	6314	6314		10.824	2.2306	1		+		7124	20201	5018	5065	6922	6922					-0.04502867618430173
DSTVACRFF	9	Unmodified	_DSTVACRFF_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-2|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-SECPEP	A375_MHC_IP_R2	2	522.654541015625	2	523.242209	1044.46987	-0.97998	-0.00051277	1.0962	0.00057357	0.1162	6.0801E-05	523.7445393831025	56.965	0.40804	57.715	57.459	57.867	0.75014					13	7	2	0	0	0	0.75164	1	21518	21518		9.3831	0	1	898330			7125	3686	5019	5066	6923	6923					-0.05059049359647361
DSTYGDEDCLY	11	Unmodified	_DSTYGDEDCLY_					0	0	0		nc|ENSG00000170835|P19835-2|CEL;ENSG00000170835|ENST00000372080|CEL	nc|ENSG00000170835|P19835-2|CEL	nc|ENSG00000170835|P19835-2|CEL	MULTI-MSMS	A375_MHC_IP_R1	1	641.1334838867188	2	640.734808	1279.45506	-0.62639	-0.00040135	-2.1385	-0.0013702	-2.7649	-0.0017715	640.7330472363061	91.639	0.55505	91.639	91.401	91.956	0					16	10	2	0	0	0	0.73078	1	33694	33694		8.1555	3.6267	1	2288700			7126	7545	5020	5067	6924	6924					-0.1734863080894229
DSVWLNIEEK	10	Unmodified	_DSVWLNIEEK_					0	0	0		CON__Q1A7A4;C5|p.S1420Hfs*6|1|0.02|ENSG00000106804|chr9:120963702-120963703|-/TGTGT|frameshift_variant;C5|p.S1420Ffs*23|1|0.07|ENSG00000106804|chr9:120963700-120963701|-/TGTTTAATGCTGGCTGAAA|frameshift_variant;ENSG00000106804|ENST00000223642|C5	CON__Q1A7A4;C5|p.S1420Hfs*6|1|0.02|ENSG00000106804|chr9:120963702-120963703|-/TGTGT|frameshift_variant	CON__Q1A7A4	MSMS	A375_MHC_IP_R2	2	616.8114624023438	2	616.81151	1231.60847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.797	1	19.4	18.9	19.9	0.60308								0	0	0	0.15637	1	5610	5610		0	0	1			+	7127	605;270	5021	5068	6925	6925					0.0019277208964467718
DSYALNLGT	9	Unmodified	_DSYALNLGT_					0	0	0			REV__ENSG00000103599|ENST00000335894|IQCH	REV__ENSG00000103599|ENST00000335894|IQCH	MULTI-SECPEP	A375_MHC_IP_R1	1	476.6424255371094	2	477.232364	952.450176	-0.32661	-0.00015587	0.15207	7.2573E-05	-0.17454	-8.3295E-05	477.23251550731203	37.352	0.4082	37.352	37.148	37.556	0					14	7	3	0	0	0	0.77396	1	12516	12516		6.2058	4.146	1	1931000	+		7128	17288	5022	5069	6926	6926					-0.027951020987529773
DSYSSSRSDLY	11	Unmodified	_DSYSSSRSDLY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENST00000568578.5_1_X:135956303-135956645:-|nuORF	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	A375_MHC_IP_R1	1	640.6752319335938	2	640.275489	1278.53642	-0.658	-0.0004213	0.15568	9.9676E-05	-0.50232	-0.00032163	640.2754649613388	37.067	0.60651	37.067	36.745	37.351	0					27	11	3	0	0	0	0.00028738	1	12434	12434		125.18	96.1	1	11898000			7129	5675	5023	5070	6927	6927					-0.09170187054701273
DSYSSSRSDLY	11	Unmodified	_DSYSSSRSDLY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENST00000568578.5_1_X:135956303-135956645:-|nuORF	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	A375_MHC_IP_R2	2	640.4970703125	2	640.275489	1278.53642	-0.97132	-0.00062191	-0.17147	-0.00010979	-1.1428	-0.0007317	640.2752345516528	36.361	0.86636	37.131	36.698	37.564	0.7709					34	16	3	0	0	0	0.01348	2	13177	13177;13222		91.085	74.936	1	13567000			7130	5675	5023	5070	6928;6929	6928					-0.09170187054701273
DTADHPCVITM	11	Unmodified	_DTADHPCVITM_					0	0	0		nc|ENSG00000177640|Q6XLA1|CASC2	nc|ENSG00000177640|Q6XLA1|CASC2	nc|ENSG00000177640|Q6XLA1|CASC2	MSMS	A375_MHC_IP_R2	2	601.6959228515625	2	601.762649	1201.51074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.244	1	58.993	58.493	59.493	0.74894								0	0	0	0.15837	1	22033	22033		15.248	0.41021	1				7131	14786	5024	5071	6930	6930					-0.08195076102356325
DTAHGDRNSI	10	Unmodified	_DTAHGDRNSI_					0	0	0			REV__ENST00000522752.5_1_8:38614850-38697853:+|nuORF	REV__ENST00000522752.5_1_8:38614850-38697853:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	543.148681640625	2	543.252151	1084.48975	-0.61856	-0.00033603	1.3198	0.000717	0.70128	0.00038097	543.7551438307703	46.414	1.5768	46.414	45.89	47.467	0					82	30	4	0	0	0	0.6806	1	16154	16154		14.838	0.93222	1	41742000	+		7132	19593	5025	5072	6931	6931					-0.049115820953147704
DTAHLLRAF	9	Unmodified	_DTAHLLRAF_					0	0	0		ENSG00000189127|ENST00000338682|ANKRD34B	ENSG00000189127|ENST00000338682|ANKRD34B	ENSG00000189127|ENST00000338682|ANKRD34B	MULTI-SECPEP	A375_MHC_IP_R2	2	522.6207275390625	2	522.285266	1042.55598	-0.81071	-0.00042342	0.78978	0.00041249	-0.020923	-1.0928E-05	522.285429289597	37.633	0.4093	38.407	38.227	38.636	0.77451					10	7	2	0	0	0	0.74651	1	13787	13787		8.5933	4.264	1	1502200			7133	8962	5026	5073	6932	6932					0.036402785373638835
DTALSLTCSLW	11	Unmodified	_DTALSLTCSLW_					0	0	0			REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	MULTI-SECPEP	A375_MHC_IP_R1	1	605.1823120117188	2	605.294639	1208.57472	-0.21158	-0.00012807	-4.4277	-0.0026801	-4.6393	-0.0028081	605.2914529157754	110.95	0.45985	110.95	110.59	111.05	0					12	8	2	0	0	0	0.9889	1	40615	40615		8.1555	1.9497	1	1656800	+		7134	18720	5027	5074	6933	6933					-0.021219726737626843
DTAPNMCAFL	10	Unmodified	_DTAPNMCAFL_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MSMS	A375_MHC_IP_R1	1	541.6730346679688	2	541.735902	1081.45725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.659	1	72.659	72.159	73.159	0								0	0	0	0.15158	1	26438	26438		14.838	2.3067	1		+		7135	17711	5028	5075	6934	6934					-0.08021828814185028
DTASYFSL	8	Unmodified	_DTASYFSL_					0	0	0			REV__ENSG00000154370|ENST00000284551|TRIM11	REV__ENSG00000154370|ENST00000284551|TRIM11	MSMS	A375_MHC_IP_R2	2	452.2543029785156	2	452.208358	902.402163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.578	1	33.315	32.815	33.815	0.73692								0	0	0	0.16876	1	11609	11609		11.64	2.8949	1		+		7136	19882	5029	5076	6935	6935					-0.052941760188105036
DTATSMFLLL	10	Unmodified	_DTATSMFLLL_					0	0	0		nc|ENSG00000189430|O76036-4|NCR1;nc|ENSG00000189430|O76036-5|NCR1;nc|ENSG00000189430|O76036-3|NCR1;nc|ENSG00000189430|O76036-2|NCR1;nc|ENSG00000189430|O76036-6|NCR1;nc|ENSG00000189430|O76036|NCR1;ENSG00000189430|ENST00000291890|NCR1	nc|ENSG00000189430|O76036-4|NCR1	nc|ENSG00000189430|O76036-4|NCR1	MULTI-MSMS	A375_MHC_IP_R2	2	556.746826171875	2	556.288825	1110.5631	-0.75126	-0.00041792	0.20118	0.00011192	-0.55007	-0.000306	556.2890359968302	83.079	0.96309	83.819	83.444	84.407	0.73962					58	18	4	0	0	0	0.23156	1	31510	31510		46.021	1.6139	1	18925000			7137	8985	5030	5077	6936	6936					0.01223830302933493
DTAVGTPDYI	10	Unmodified	_DTAVGTPDYI_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2;ENSG00000067900|ENST00000399799|ROCK1	ENSG00000134318|ENST00000315872|ROCK2;ENSG00000067900|ENST00000399799|ROCK1	ENSG00000134318|ENST00000315872|ROCK2	MULTI-MSMS	A375_MHC_IP_R1	1	526.6868896484375	2	526.250754	1050.48696	-0.25878	-0.00013618	0.049172	2.5877E-05	-0.20961	-0.00011031	526.2507527448703	71.95	1.6667	71.95	71.465	73.132	0					99	32	5	0	0	0	0.53946	1	26420	26420		25.399	2.663	1	197270000			7138	4566;1447	5031	5078	6937	6937					-0.03626850272848969
DTAYKSSSY	9	Unmodified	_DTAYKSSSY_					0	0	0			REV__ENST00000494540.5_1_10:38645382-38658918:+|nuORF	REV__ENST00000494540.5_1_10:38645382-38658918:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	511.1766662597656	2	511.227279	1020.44001	-0.96285	-0.00049223	0.22144	0.00011321	-0.74141	-0.00037903	511.22751956078645	62.049	0.35463	62.792	62.622	62.976	0.74263					8	6	2	0	0	0	0.64808	1	23544	23544		11.64	1.4569	1	428160	+		7139	18640	5032	5079	6938	6938					-0.06939709823996054
DTCARAHLW	9	Unmodified	_DTCARAHLW_					0	0	0			REV__ENST00000366738.5_1_1:228295970-228296663:-|nuORF	REV__ENST00000366738.5_1_1:228295970-228296663:-|nuORF	MSMS	A375_MHC_IP_R2	2	536.671630859375	2	536.753276	1071.492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.898	1	62.641	62.141	63.141	0.74263								0	0	0	0.1499	1	23462	23462		21.747	0	1		+		7140	23681	5033	5080	6939	6939					-0.04088824891232434
DTCVVPEKF	9	Unmodified	_DTCVVPEKF_					0	0	0		ENST00000472931.6_1_7:13946033-14025001:-|nuORF;nc|ENSG00000006468|P50549-4|ETV1;nc|ENSG00000006468|P50549-5|ETV1;nc|ENSG00000006468|P50549-6|ETV1;nc|ENSG00000006468|P50549-3|ETV1;nc|ENSG00000006468|P50549-2|ETV1;ENSG00000006468|ENST00000430479|ETV1	ENST00000472931.6_1_7:13946033-14025001:-|nuORF	ENST00000472931.6_1_7:13946033-14025001:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	519.9856567382812	2	519.252243	1036.48993	-0.4056	-0.00021061	-2.1563	-0.0011197	-2.5619	-0.0013303	519.2512760638608	72.627	0.30515	72.627	72.474	72.779	0					7	5	2	0	0	0	0.69504	1	26479	26479		12.532	0	1	512770			7141	916	5034	5081	6940	6940					-0.02685298419692117
DTDAQQAFKY	10	Unmodified	_DTDAQQAFKY_					0	0	0		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-7|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MULTI-MSMS	A375_MHC_IP_R1	1	593.7070922851562	2	593.772385	1185.53022	-0.32212	-0.00019126	-0.3003	-0.00017831	-0.62242	-0.00036958	593.772495382736	46.159	0.65591	46.159	45.789	46.444	0					32	12	3	0	0	0	3.3034E-05	1	16190	16190		168.54	118.98	1	10055000			7142	6487	5035	5082	6941	6941					-0.0551266049556034
DTDAQQAFKY	10	Unmodified	_DTDAQQAFKY_					0	0	0		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-7|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MULTI-MSMS	A375_MHC_IP_R2	2	593.7077026367188	2	593.772385	1185.53022	-0.59005	-0.00035036	0.34825	0.00020678	-0.2418	-0.00014357	593.7728072980326	45.512	0.75675	46.278	45.947	46.704	0.76519					32	14	3	0	0	0	0.060376	1	16939	16939		72.968	43.886	1	10143000			7143	6487	5035	5082	6942	6942					-0.0551266049556034
DTDARPYTNF	10	Unmodified	_DTDARPYTNF_					0	0	0			REV__ENSG00000130669|ENST00000360442|PAK4	REV__ENSG00000130669|ENST00000360442|PAK4	MULTI-SECPEP	A375_MHC_IP_R2	2	399.74658203125	3	400.515765	1198.52547	-0.048493	-1.9422E-05	-0.59439	-0.00023806	-0.64288	-0.00025748	400.51549918090143	30.42	0.45468	31.139	30.962	31.417	0.71857					10	8	2	0	0	0	0.91556	1	10766	10766		3.3196	2.6928	1	1920000	+		7144	18552	5036	5083	6943	6943					-0.06585544638323881
DTDCDSDVP	9	Unmodified	_DTDCDSDVP_					0	0	0			REV__nc|ENSG00000110723|Q8NEV8-2|EXPH5	REV__nc|ENSG00000110723|Q8NEV8-2|EXPH5	MSMS	A375_MHC_IP_R2	2	483.8294982910156	2	483.671479	965.328406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.385	1	75.123	74.623	75.623	0.73752								0	0	0	0.15486	1	28236	28236		4.3292	1.44	1		+		7145	17639	5037	5084	6944	6944					-0.1556451224344073
DTDCEVFRQR	10	Unmodified	_DTDCEVFRQR_					0	0	0		nc|ENSG00000173275|Q6P9G9-3|ZNF449;nc|ENSG00000173275|Q6P9G9-2|ZNF449;ENSG00000173275|ENST00000339249|ZNF449	nc|ENSG00000173275|Q6P9G9-3|ZNF449	nc|ENSG00000173275|Q6P9G9-3|ZNF449	MULTI-MSMS	A375_MHC_IP_R1	1	423.9278259277344	3	423.527788	1267.56153	-0.066719	-2.8258E-05	0.79354	0.00033609	0.72682	0.00030783	423.5280658686347	61.591	0.61274	61.591	61.382	61.994	0					16	11	2	0	0	0	0.70334	1	22235	22235		6.6235	0.84002	1	3647300			7146	7784	5038	5085	6945	6945					-0.06154410733142868
DTDCEVFRQR	10	Unmodified	_DTDCEVFRQR_					0	0	0		nc|ENSG00000173275|Q6P9G9-3|ZNF449;nc|ENSG00000173275|Q6P9G9-2|ZNF449;ENSG00000173275|ENST00000339249|ZNF449	nc|ENSG00000173275|Q6P9G9-3|ZNF449	nc|ENSG00000173275|Q6P9G9-3|ZNF449	MULTI-MSMS	A375_MHC_IP_R2	2	423.9277648925781	3	423.527788	1267.56153	-0.44773	-0.00018962	0.424	0.00017958	-0.023722	-1.0047E-05	423.5278431330413	60.938	0.6063	61.683	61.414	62.02	0.74503					21	11	3	0	0	0	0.66308	1	23082	23082		10.315	2.3698	1	3424000			7147	7784	5038	5085	6946	6946					-0.06154410733142868
DTDCEVFRQR	10	Unmodified	_DTDCEVFRQR_					0	0	0		nc|ENSG00000173275|Q6P9G9-3|ZNF449;nc|ENSG00000173275|Q6P9G9-2|ZNF449;ENSG00000173275|ENST00000339249|ZNF449	nc|ENSG00000173275|Q6P9G9-3|ZNF449	nc|ENSG00000173275|Q6P9G9-3|ZNF449	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	423.527788	1267.56153	-0.44773	-0.00018962	0.424	0.00017958	-0.023722	-1.0047E-05	423.5278431330413	60.938	0.6063	61.683	61.414	62.02	0.74503	0.046206	-0.00023612	NaN	10.315	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3424000			7148	7784	5038	5085							-0.06154410733142868
DTDDEIAKY	9	Unmodified	_DTDDEIAKY_					0	0	0		ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;ENST00000503126.1_1_5:179133324-179137021:+|nuORF	ENSG00000127022|ENST00000247461|CANX	ENSG00000127022|ENST00000247461|CANX	MULTI-SECPEP	A375_MHC_IP_R1	1	535.6376953125	2	535.237844	1068.46113	-0.52939	-0.00028335	-1.1814	-0.00063232	-1.7108	-0.00091567	535.2378606484426	38.687	0.91861	38.687	38.319	39.238	0					61	17	6	0	0	0	0.061442	1	13102	13102		72.968	50.232	1	14673000			7149	4073	5039	5086	6947	6947					-0.07035744515133047
DTDDEIAKY	9	Unmodified	_DTDDEIAKY_					0	0	0		ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;ENST00000503126.1_1_5:179133324-179137021:+|nuORF	ENSG00000127022|ENST00000247461|CANX	ENSG00000127022|ENST00000247461|CANX	MULTI-SECPEP	A375_MHC_IP_R2	2	535.6370849609375	2	535.237844	1068.46113	-1.0619	-0.00056839	-0.39336	-0.00021054	-1.4553	-0.00077893	535.237831820816	38.028	0.97014	38.802	38.483	39.453	0.77451					37	18	3	0	0	0	0.061442	1	13907	13907		72.968	50.232	1	14579000			7150	4073	5039	5086	6948	6948					-0.07035744515133047
DTDDLEFAK	9	Unmodified	_DTDDLEFAK_					0	0	0			REV__ENSG00000198677|ENST00000358746|SKIC3	REV__ENSG00000198677|ENST00000358746|SKIC3	MULTI-MSMS	A375_MHC_IP_R2	2	527.657958984375	2	527.240386	1052.46622	-0.44203	-0.00023306	-0.21876	-0.00011534	-0.66079	-0.0003484	527.2402350842023	62.946	0.70678	63.688	63.333	64.04	0.74263					32	13	3	0	0	0	0.32899	1	23739	23739		28.487	0	1	8066200	+		7151	22395	5040	5087	6949	6949					-0.05791440652524216
DTDDRELRY	9	Unmodified	_DTDDRELRY_					0	0	0		ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000150893|Q5SZK8-2|FREM2	ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	MULTI-SECPEP	A375_MHC_IP_R1	1	395.25091552734375	3	394.851036	1181.53128	-0.17709	-6.9923E-05	-0.57156	-0.00022568	-0.74864	-0.0002956	394.8506449501732	27.752	0.7048	27.752	27.533	28.238	0					24	13	3	0	0	0	0.40377	1	8480	8480		21.799	7.5813	1	4647800			7152	5867	5041	5088	6950	6950					-0.052224461266632716
DTDDRELRY	9	Unmodified	_DTDDRELRY_					0	0	0		ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000150893|Q5SZK8-2|FREM2	ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	MULTI-SECPEP	A375_MHC_IP_R2	2	395.5963134765625	3	394.851036	1181.53128	-0.13561	-5.3545E-05	-0.30673	-0.00012111	-0.44234	-0.00017466	394.8508641422329	27.191	0.61102	27.869	27.69	28.301	0.67857					22	11	3	0	0	0	0.61452	1	9277	9277		14.957	12.704	1	5098800			7153	5867	5041	5088	6951	6951					-0.052224461266632716
DTDDSKKY	8	Unmodified	_DTDDSKKY_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R1	1	486.327880859375	2	486.219454	970.424355	-0.13515	-6.5714E-05	0.10916	5.3077E-05	-0.025989	-1.2637E-05	486.21933787595685	42.345	0.40413	42.345	42.183	42.587	0					10	7	2	0	0	0	0.972	1	14701	14701		4.756	0	1	716460	+		7154	19932	5042	5089	6952	6952					-0.06203996341037055
DTDDVTYQVY	10	Unmodified	_DTDDVTYQVY_					0	0	0		ENST00000523897.5_1_8:62496079-62555960:-|nuORF;nc|ENSG00000198363|Q12797-9|ASPH;nc|ENSG00000198363|Q12797-6|ASPH;nc|ENSG00000198363|Q12797-11|ASPH;nc|ENSG00000198363|Q12797-5|ASPH;nc|ENSG00000198363|Q12797-8|ASPH;nc|ENSG00000198363|Q12797-2|ASPH;nc|ENSG00000198363|Q12797-10|ASPH;ENSG00000198363|ENST00000379454|ASPH	ENST00000523897.5_1_8:62496079-62555960:-|nuORF	ENST00000523897.5_1_8:62496079-62555960:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	609.6932373046875	2	609.761683	1217.50881	-0.32764	-0.00019978	0.55822	0.00034038	0.23058	0.0001406	609.761543622261	75.367	0.90571	75.367	75.009	75.915	0					38	17	3	0	0	0	0.19699	1	27503	27503		49.554	25.534	1	4294100			7155	9259	5043	5090	6953	6953					-0.09124090314935529
DTDDVTYQVY	10	Unmodified	_DTDDVTYQVY_					0	0	0		ENST00000523897.5_1_8:62496079-62555960:-|nuORF;nc|ENSG00000198363|Q12797-9|ASPH;nc|ENSG00000198363|Q12797-6|ASPH;nc|ENSG00000198363|Q12797-11|ASPH;nc|ENSG00000198363|Q12797-5|ASPH;nc|ENSG00000198363|Q12797-8|ASPH;nc|ENSG00000198363|Q12797-2|ASPH;nc|ENSG00000198363|Q12797-10|ASPH;ENSG00000198363|ENST00000379454|ASPH	ENST00000523897.5_1_8:62496079-62555960:-|nuORF	ENST00000523897.5_1_8:62496079-62555960:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	610.1614379882812	2	609.761683	1217.50881	-0.5334	-0.00032525	1.2154	0.00074112	0.68202	0.00041587	609.7615669898744	74.866	0.75905	75.603	75.264	76.023	0.73752					38	14	4	0	0	0	0.19943	1	28400	28400		69.105	47.358	1	6945400			7156	9259	5043	5090	6954	6954					-0.09124090314935529
DTDDWIAYF	9	Unmodified	_DTDDWIAYF_					0	0	0			REV__nc|ENSG00000096093|Q5JVL4-3|EFHC1	REV__nc|ENSG00000096093|Q5JVL4-3|EFHC1	MULTI-SECPEP	A375_MHC_IP_R2	2	382.5927734375	3	382.497712	1144.47131	-0.021817	-8.345E-06	-2.6328	-0.001007	-2.6546	-0.0010154	382.4970204295826	27.315	0.20372	27.993	27.895	28.098	0.67857					5	3	2	0	0	0	0.74651	1	9291	9291		2.7352	0	1	710010	+		7157	17006	5044	5091	6955	6955					-0.09515136789923417
DTDEALRC	8	Unmodified	_DTDEALRC_					0	0	0		nc|ENSG00000188827|Q8IY92-2|SLX4;ENSG00000188827|ENST00000294008|SLX4	nc|ENSG00000188827|Q8IY92-2|SLX4	nc|ENSG00000188827|Q8IY92-2|SLX4	MULTI-SECPEP	A375_MHC_IP_R1	1	462.0998840332031	2	461.700374	921.386196	-0.35871	-0.00016562	-0.16496	-7.6162E-05	-0.52367	-0.00024178	461.7002294433786	52.625	0.86178	52.625	52.237	53.099	0					28	16	2	0	0	0	0.972	1	18688	18688		4.756	0	1	3243400			7158	8941	5045	5092	6956	6956					-0.07764205527359991
DTDELFEINEL	11	Unmodified	_DTDELFEINEL_					0	0	0			REV__VCAM1|p.L594*|1|0.38|ENSG00000162692|chr1:100732672-100732672|T/-|frameshift_variant	REV__VCAM1|p.L594*|1|0.38|ENSG00000162692|chr1:100732672-100732672|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	446.99176025390625	3	446.541757	1336.60344	-0.6579	-0.00029378	2.5646	0.0011452	1.9067	0.00085141	446.5431283012798	19.677	0.35494	20.287	20.044	20.399	0.61029					9	6	2	0	0	0	0.99955	1	6033	6033		0.073264	0.0088572	1	454310	+		7159	20292	5046	5093	6957	6957					-0.05139576563601622
DTDEYVLKY	9	Unmodified	_DTDEYVLKY_					0	0	0		nc|ENSG00000096093|Q5JVL4-3|EFHC1;ENSG00000096093|ENST00000371068|EFHC1	nc|ENSG00000096093|Q5JVL4-3|EFHC1	nc|ENSG00000096093|Q5JVL4-3|EFHC1	MULTI-MSMS	A375_MHC_IP_R1	1	573.6718139648438	2	573.271687	1144.52882	-0.43735	-0.00025072	0.4507	0.00025837	0.013347	7.6515E-06	573.2718993028885	66.499	0.76434	66.499	66.122	66.887	0					41	13	4	0	0	0	0.0078915	1	24047	24047		168.66	128.7	1	18170000			7160	2056	5047	5094	6958	6958					-0.03766294584329444
DTDEYVLKY	9	Unmodified	_DTDEYVLKY_					0	0	0		nc|ENSG00000096093|Q5JVL4-3|EFHC1;ENSG00000096093|ENST00000371068|EFHC1	nc|ENSG00000096093|Q5JVL4-3|EFHC1	nc|ENSG00000096093|Q5JVL4-3|EFHC1	MULTI-MSMS	A375_MHC_IP_R2	2	573.6953125	2	573.271687	1144.52882	-0.44412	-0.0002546	-0.20236	-0.00011601	-0.64648	-0.00037061	573.2715360066453	65.855	0.91696	66.593	66.172	67.089	0.73811					44	17	4	0	0	0	0.0011619	2	24964	24916;24964		168.66	126.56	1	18093000			7161	2056	5047	5094	6959;6960	6960					-0.03766294584329444
DTDFDINYI	9	Unmodified	_DTDFDINYI_					0	0	0			REV__tr|U7SSF8|U7SSF8_FUSNUDUF4299domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01430PE=4SV=1	REV__tr|U7SSF8|U7SSF8_FUSNUDUF4299domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01430PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	558.684326171875	2	558.248212	1114.48187	-0.86539	-0.0004831	-2.0687	-0.0011548	-2.9341	-0.0016379	558.7483260788532	97.437	0.40688	98.193	97.974	98.381	0.75586					12	7	3	0	0	0	0.44024	1	36988	36988		22.736	3.4793	1	1611800	+		7162	28428	5048	5095	6961	6961					-0.07079154135476529
DTDGKCLEY	9	Unmodified	_DTDGKCLEY_					0	0	0		ENST00000498524.5_1_3:15727727-15838055:-|nuORF;nc|ENSG00000206560|O15084-2|ANKRD28;nc|ENSG00000206560|O15084|ANKRD28;ENSG00000206560|ENST00000683139|ANKRD28;nc|ENSG00000206560|O15084-1|ANKRD28	ENST00000498524.5_1_3:15727727-15838055:-|nuORF	ENST00000498524.5_1_3:15727727-15838055:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	522.620849609375	2	522.221139	1042.42773	-0.68979	-0.00036022	0.22839	0.00011927	-0.46139	-0.00024095	522.2212610146972	38.307	1.0697	38.307	37.964	39.033	0					47	20	3	0	0	0	0.13208	1	12945	12945		66.457	11.683	1	9853700			7163	9544	5049	5096	6962	6962					-0.09179069558695119
DTDGKCLEY	9	Unmodified	_DTDGKCLEY_					0	0	0		ENST00000498524.5_1_3:15727727-15838055:-|nuORF;nc|ENSG00000206560|O15084-2|ANKRD28;nc|ENSG00000206560|O15084|ANKRD28;ENSG00000206560|ENST00000683139|ANKRD28;nc|ENSG00000206560|O15084-1|ANKRD28	ENST00000498524.5_1_3:15727727-15838055:-|nuORF	ENST00000498524.5_1_3:15727727-15838055:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	522.6207275390625	2	522.221139	1042.42773	-0.83843	-0.00043785	-0.11747	-6.1345E-05	-0.9559	-0.00049919	522.2210821973854	37.693	1.4804	38.468	37.87	39.351	0.77451					53	28	3	0	0	0	0.13208	1	13787	13787		66.457	11.683	1	10083000			7164	9544	5049	5096	6963	6963					-0.09179069558695119
DTDHYFLRY	9	Unmodified	_DTDHYFLRY_					0	0	0		nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT	MULTI-MSMS	A375_MHC_IP_R1	1	410.92431640625	3	410.524372	1228.55129	0.036632	1.5038E-05	-0.17402	-7.1441E-05	-0.13739	-5.6403E-05	410.5244188770195	61.661	2.61	61.661	61.227	63.837	0					161	50	5	0	0	0	0.0095341	3	22132	22132;22592;22810		96.936	69.847	1	934590000			7165	3874;14576	5050	5097	6964;6965;6966	6964					-0.053846503960585324
DTDHYFLRY	9	Unmodified	_DTDHYFLRY_					0	0	0		nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT	MULTI-MSMS	A375_MHC_IP_R1	1	615.6826782226562	2	615.28292	1228.55129	-0.34115	-0.00020991	-0.31612	-0.00019451	-0.65728	-0.00040441	615.2828062672887	61.642	2.0984	61.642	61.227	63.326	0					133	40	6	0	0	0	1.633E-06	4	22139	22139;22367;22458;22599		259.3	213.6	1	635890000			7166	3874;14576	5050	5097	6967;6968;6969;6970	6967					-0.053846503960585324
DTDHYFLRY	9	Unmodified	_DTDHYFLRY_					0	0	0		nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT	MULTI-MSMS	A375_MHC_IP_R2	2	410.5869445800781	3	410.524372	1228.55129	-0.28642	-0.00011758	-0.4112	-0.00016881	-0.69762	-0.00028639	410.52430984306903	60.946	2.6787	61.691	61.211	63.89	0.74503					173	52	6	0	0	0	0.02331	5	23086	22972;23086;23211;23497;23649		80.676	56.261	1	1059499999.9999999			7167	3874;14576	5050	5097	6971;6972;6973;6974;6975	6972					-0.053846503960585324
DTDHYFLRY	9	Unmodified	_DTDHYFLRY_					0	0	0		nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT	MULTI-MSMS	A375_MHC_IP_R2	2	615.6821899414062	2	615.28292	1228.55129	-0.91168	-0.00056094	-0.18823	-0.00011582	-1.0999	-0.00067676	615.282861892814	60.9	2.0736	61.645	61.109	63.183	0.74504					122	40	6	0	0	0	0.00075692	4	22986	22986;23100;23212;23450		240.48	194.79	1	608390000			7168	3874;14576	5050	5097	6976;6977;6978;6979	6976					-0.053846503960585324
DTDIAITFHNW	11	Unmodified	_DTDIAITFHNW_					0	0	0			REV__ENSG00000139865|ENST00000553443|TTC6	REV__ENSG00000139865|ENST00000553443|TTC6	MULTI-MSMS	A375_MHC_IP_R2	2	445.27862548828125	3	444.878815	1331.61462	-0.60033	-0.00026707	0.14688	6.5342E-05	-0.45346	-0.00020173	444.87887269709074	37.682	0.92331	38.456	38.124	39.047	0.77451					49	17	5	0	0	0	0.69069	1	13755	13755		16.275	8.4285	1	67120000	+		7169	19183	5051	5098	6980	6980					-0.03792709678805295
DTDIAITFHNW	11	Unmodified	_DTDIAITFHNW_					0	0	0			REV__ENSG00000139865|ENST00000553443|TTC6	REV__ENSG00000139865|ENST00000553443|TTC6	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	444.878815	1331.61462	-0.11914	-5.3005E-05	0.29687	0.00013207	0.17772	7.9066E-05	444.87891384584844	38.548	1.0689	38.548	38.067	39.136	0	0.045678	0.00010934	NaN	16.275	51	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60379000	+		7170	19183	5051	5098							-0.03792709678805295
DTDIQNKLY	9	Unmodified	_DTDIQNKLY_					0	0	0		ENSG00000123165|ENST00000371124|ACTRT1	ENSG00000123165|ENST00000371124|ACTRT1	ENSG00000123165|ENST00000371124|ACTRT1	MULTI-SECPEP	A375_MHC_IP_R1	1	555.8450317382812	2	555.277303	1108.54005	-0.44236	-0.00024563	0.62837	0.00034892	0.18601	0.00010329	555.7794617469485	82.698	0.45414	82.698	82.52	82.974	0					12	8	2	0	0	0	0.50702	1	30331	30331		32.305	8.2849	1	1634000			7171	3832	5052	5099	6981	6981					-0.009874724901919762
DTDIQNKLY	9	Unmodified	_DTDIQNKLY_					0	0	0		ENSG00000123165|ENST00000371124|ACTRT1	ENSG00000123165|ENST00000371124|ACTRT1	ENSG00000123165|ENST00000371124|ACTRT1	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1446533203125	2	555.277303	1108.54005	-0.81953	-0.00045507	1.4401	0.00079965	0.62055	0.00034458	555.2780604420126	82.122	0.45862	82.865	82.584	83.042	0.74293					12	8	2	0	0	0	0.3213	1	31156	31156		46.021	7.8698	1	1897900			7172	3832	5052	5099	6982	6982					-0.009874724901919762
DTDISLIRY	9	Unmodified	_DTDISLIRY_					0	0	0		ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	548.6871948242188	2	548.287671	1094.56079	-0.43485	-0.00023842	-0.26534	-0.00014548	-0.70019	-0.00038391	548.2874782328863	82.791	2.1785	82.791	82.113	84.292	0					89	42	4	0	0	0	0.011043	1	30205	30205		171.09	89.196	1	53031000			7173	2257	5053	5100	6983	6983					0.017291178894765835
DTDISLIRY	9	Unmodified	_DTDISLIRY_					0	0	0		ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6874389648438	2	548.287671	1094.56079	-0.83312	-0.00045679	0.47151	0.00025852	-0.36161	-0.00019827	548.2878749788744	82.072	1.4689	82.814	82.078	83.547	0.74293					72	28	4	0	0	0	0.011093	1	31118	31118		168.66	89.931	1	54854000			7174	2257	5053	5100	6984	6984					0.017291178894765835
DTDKFLETW	9	Unmodified	_DTDKFLETW_					0	0	0		nc|ENSG00000128881|Q6IQ55-3|TTBK2	nc|ENSG00000128881|Q6IQ55-3|TTBK2	nc|ENSG00000128881|Q6IQ55-3|TTBK2	MULTI-SECPEP	A375_MHC_IP_R2	2	578.1719970703125	2	577.771854	1153.52915	-0.70348	-0.00040645	3.608	0.0020846	2.9045	0.0016782	577.7741157125964	33.637	0.4037	34.389	34.196	34.6	0.75225					11	7	2	0	0	0	0.35487	1	12103	12103		43.858	15.371	1	2153500			7175	14592	5054	5101	6985	6985					-0.041468748644547304
DTDLTFFRN	9	Unmodified	_DTDLTFFRN_					0	0	0			REV__nc|ENSG00000115896|Q15111-2|PLCL1	REV__nc|ENSG00000115896|Q15111-2|PLCL1	MSMS	A375_MHC_IP_R2	2	564.6560668945312	2	564.769645	1127.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.219	1	82.962	82.462	83.462	0.74293								0	0	0	0.13141	1	31232	31232		32.305	16.458	1		+		7176	17920	5055	5102	6986	6986					-0.03392339287370305
DTDPSIYR	8	Unmodified	_DTDPSIYR_					0	0	0		nc|ENSG00000196364|A6NIE9|PRSS29P	nc|ENSG00000196364|A6NIE9|PRSS29P	nc|ENSG00000196364|A6NIE9|PRSS29P	MULTI-MSMS	A375_MHC_IP_R1	1	484.1037292480469	2	483.729989	965.445425	-0.29125	-0.00014089	0.22915	0.00011084	-0.062102	-3.0041E-05	483.73005419989914	43.727	0.8656	43.727	43.351	44.216	0					48	16	4	0	0	0	0.1699	2	15300	15170;15300		71.134	8.3885	1	45148000			7177	14835	5056	5103	6987;6988	6988					-0.03867986241516519
DTDPSIYR	8	Unmodified	_DTDPSIYR_					0	0	0		nc|ENSG00000196364|A6NIE9|PRSS29P	nc|ENSG00000196364|A6NIE9|PRSS29P	nc|ENSG00000196364|A6NIE9|PRSS29P	MULTI-MSMS	A375_MHC_IP_R2	2	483.6978759765625	2	483.729989	965.445425	-0.49259	-0.00023828	-0.025156	-1.2169E-05	-0.51775	-0.00025045	483.7299342711121	43.027	0.96256	43.8	43.319	44.282	0.7724					49	18	4	0	0	0	0.1677	1	15990	15990		74.929	0.50624	1	46095000			7178	14835	5056	5103	6989	6989					-0.03867986241516519
DTDPSQPQSQP	11	Unmodified	_DTDPSQPQSQP_					0	0	0		nc|ENSG00000070047|Q9P1Y6-2|PHRF1	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MSMS	A375_MHC_IP_R2	2	600.2138061523438	2	600.262382	1198.51021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.531	1	39.306	38.806	39.806	0.77451								0	0	0	0.16203	1	14189	14189		8.1555	0.24537	1				7179	14477	5057	5104	6990	6990					-0.08110456226177121
DTDQENLKY	9	Unmodified	_DTDQENLKY_					0	0	0			REV__ENSG00000143850|ENST00000272203|PLEKHA6	REV__ENSG00000143850|ENST00000272203|PLEKHA6	MULTI-SECPEP	A375_MHC_IP_R2	2	562.8917236328125	2	563.256568	1124.49858	-0.44745	-0.00025203	1.5348	0.00086451	1.0874	0.00061248	563.2579332627822	92.122	0.20314	92.861	92.734	92.937	0.73902					6	3	2	0	0	0	0.71341	1	35009	35009		13.042	6.8367	1	344390	+		7180	19393	5058	5105	6991	6991					-0.05868653249513045
DTDRLVFIF	9	Unmodified	_DTDRLVFIF_					0	0	0			REV__ENST00000572517.1_1_17:1679804-1680737:+|nuORF	REV__ENST00000572517.1_1_17:1679804-1680737:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	375.9212951660156	3	375.86948	1124.58661	0.18424	6.9249E-05	1.4208	0.00053403	1.605	0.00060328	375.870294610734	27.718	0.50521	27.718	27.432	27.937	0					15	9	3	0	0	0	0.72761	1	8442	8442		4.5289	0	1	1585100	+	+	7181	15897	5059	5106	6992	6992					0.029300121317419325
DTDRWMDLWWY	11	Unmodified	_DTDRWMDLWWY_					0	0	0			REV__ENSG00000257008|ENST00000582579|GPR142	REV__ENSG00000257008|ENST00000582579|GPR142	MSMS	A375_MHC_IP_R1	1	529.58935546875	3	529.56261	1585.666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.449	1	34.449	33.949	34.949	0								0	0	0	0.16334	1	11356	11356		1.3296	0.87513	1		+		7182	22887	5060	5107	6993	6993					-0.10340708976400492
DTDSDIFGFP	10	Unmodified	_DTDSDIFGFP_					0	0	0			REV__nc|ENSG00000137337|Q14676-2|MDC1	REV__nc|ENSG00000137337|Q14676-2|MDC1	MULTI-MSMS	A375_MHC_IP_R1	1	557.6403198242188	2	557.240386	1112.46622	-0.57803	-0.0003221	0.46086	0.00025681	-0.11717	-6.5292E-05	557.2405492721186	58.173	0.60819	58.173	57.873	58.481	0					24	11	3	0	0	0	0.62155	1	20852	20852		19.257	4.0085	1	4409700	+		7183	19001	5061	5108	6994	6994					-0.0855144065251352
DTDSINLY	8	Unmodified	_DTDSINLY_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61719906-61720176:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	A375_MHC_IP_R1	1	940.6167602539062	1	940.425818	939.418542	-0.14141	-0.00013298	0.32297	0.00030373	0.18156	0.00017075	940.4257813850829	80.835	0.65974	80.835	80.492	81.151	0					28	12	3	0	0	0	0.058234	1	29576	29576		131.3	41.871	1	6862100			7184	1768	5062	5109	6995	6995					-0.05359094852713042
DTDSINLY	8	Unmodified	_DTDSINLY_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61719906-61720176:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MATCH	A375_MHC_IP_R2	2		1	940.425818	939.418542	-0.21206	-0.00019942	-0.10389	-9.7702E-05	-0.31595	-0.00029713	940.4255808790695	80.19	0.55701	80.935	80.657	81.214	0.74474	0.050034	-0.00020074	NaN	131.3	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6365200			7185	1768	5062	5109							-0.05359094852713042
DTDVEYLEI	9	Unmodified	_DTDVEYLEI_					0	0	0		nc|ENSG00000108231|O95970-3|LGI1;ENSG00000108231|ENST00000371418|LGI1	nc|ENSG00000108231|O95970-3|LGI1	nc|ENSG00000108231|O95970-3|LGI1	MSMS	A375_MHC_IP_R2	2	548.7073974609375	2	548.755869	1095.49719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.595	1	83.338	82.838	83.838	0.74293								0	0	0	0.14905	1	31376	31376		23.148	6.2061	1				7186	2788	5063	5110	6996	6996					-0.046742873382982
DTDWFKETKNQ	11	Unmodified	_DTDWFKETKNQ_					0	0	0		TSPAN3|p.N158D|1|0.07|ENSG00000140391|chr15:77052890-77052890|T/C|missense_variant	TSPAN3|p.N158D|1|0.07|ENSG00000140391|chr15:77052890-77052890|T/C|missense_variant	TSPAN3|p.N158D|1|0.07|ENSG00000140391|chr15:77052890-77052890|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	706.7293701171875	2	706.328056	1410.64156	-0.58713	-0.00041471	1.59	0.0011231	1.0028	0.00070834	706.3297658444933	98.852	0.60908	98.852	98.659	99.268	0					24	11	3	0	0	0	0.84606	1	36321	36321		16.149	2.5342	1	2340000			7187	30087	5064	5111	6997	6997					-0.047336458582776686
DTDYAFYCLS	10	Unmodified	_DTDYAFYCLS_					0	0	0			REV__tr|U7SU18|U7SU18_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00984PE=4SV=1	REV__tr|U7SU18|U7SU18_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00984PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	599.641845703125	2	599.242072	1196.46959	-0.32748	-0.00019624	-1.1488	-0.00068839	-1.4763	-0.00088464	599.2417389605351	72.976	0.50758	72.976	72.676	73.184	0					15	9	3	0	0	0	0.91556	1	26580	26580		10.074	3.8681	1	1187000	+		7188	28527	5065	5112	6998	6998					-0.12078513870187635
DTDYRSLP	8	Unmodified	_DTDYRSLP_					0	0	0		nc|ENSG00000160185|P57075-3|UBASH3A	nc|ENSG00000160185|P57075-3|UBASH3A	nc|ENSG00000160185|P57075-3|UBASH3A	MULTI-MSMS	A375_MHC_IP_R2	2	484.1295471191406	2	483.729989	965.445425	-0.49259	-0.00023828	-0.025156	-1.2169E-05	-0.51775	-0.00025045	483.7299342711121	43.027	0.96256	43.8	43.319	44.282	0.7724					49	18	4	0	0	0	0.1699	1	15949	15949		71.134	0	1	46095000			7189	14708	5066	5113	6999	6999					-0.03867986241516519
DTDYRSMEY	9	Oxidation (M)	_DTDYRSM(Oxidation (M))EY_		DTDYRSM(1)EY		DTDYRSM(110)EY	0	0	1		ENSG00000004534|ENST00000266022|RBM6;nc|ENSG00000004534|P78332-3|RBM6	ENSG00000004534|ENST00000266022|RBM6	ENSG00000004534|ENST00000266022|RBM6	MULTI-MSMS	A375_MHC_IP_R1	1	598.6319580078125	2	598.232235	1194.44992	-0.53315	-0.00031895	0.1249	7.4721E-05	-0.40824	-0.00024422	598.2323819654001	27.75	0.65596	27.75	27.381	28.037	0					28	12	3	0	0	0	0.0096822	1	8393	8393		110.55	58.284	1	6029800			7190	867	5067	5114	7000	7000		4			-0.13952889880920338
DTDYRSMEY	9	Oxidation (M)	_DTDYRSM(Oxidation (M))EY_		DTDYRSM(1)EY		DTDYRSM(110)EY	0	0	1		ENSG00000004534|ENST00000266022|RBM6;nc|ENSG00000004534|P78332-3|RBM6	ENSG00000004534|ENST00000266022|RBM6	ENSG00000004534|ENST00000266022|RBM6	MULTI-MSMS	A375_MHC_IP_R2	2	598.6320190429688	2	598.232235	1194.44992	-0.55446	-0.0003317	0.21396	0.000128	-0.3405	-0.0002037	598.2324669319756	27.27	0.66402	27.948	27.587	28.251	0.67857					28	12	3	0	0	0	0.0096822	1	9223	9223		110.55	58.284	1	5603200			7191	867	5067	5114	7001	7001		4			-0.13952889880920338
DTDYRSMEY	9	Unmodified	_DTDYRSMEY_					0	0	0		ENSG00000004534|ENST00000266022|RBM6;nc|ENSG00000004534|P78332-3|RBM6	ENSG00000004534|ENST00000266022|RBM6	ENSG00000004534|ENST00000266022|RBM6	MULTI-MSMS	A375_MHC_IP_R1	1	590.2120361328125	2	590.234778	1178.455	-0.33164	-0.00019574	0.2673	0.00015777	-0.064335	-3.7973E-05	590.23501051008	43.866	0.71416	43.866	43.502	44.216	0					32	13	4	0	0	0	0.0092511	2	15230	15230;15265		103.42	59.561	1	6676100			7192	867	5067	5115	7002;7003	7002					-0.1270858601828877
DTDYRSMEY	9	Unmodified	_DTDYRSMEY_					0	0	0		ENSG00000004534|ENST00000266022|RBM6;nc|ENSG00000004534|P78332-3|RBM6	ENSG00000004534|ENST00000266022|RBM6	ENSG00000004534|ENST00000266022|RBM6	MULTI-MSMS	A375_MHC_IP_R2	2	590.6849975585938	2	590.234778	1178.455	-0.55453	-0.0003273	-2.0321	-0.0011994	-2.5866	-0.0015267	590.2333880714838	27.698	0.30263	28.376	28.2	28.502	0.67857					8	5	2	0	0	0	0.69674	1	9413	9413		7.2892	0.56607	1	3195400			7193	867	5067	5115	7004	7004					-0.1270858601828877
DTDYRSMEY	9	Unmodified	_DTDYRSMEY_					0	0	0		ENSG00000004534|ENST00000266022|RBM6;nc|ENSG00000004534|P78332-3|RBM6	ENSG00000004534|ENST00000266022|RBM6	ENSG00000004534|ENST00000266022|RBM6	MULTI-MSMS	A375_MHC_IP_R2	2	590.6340942382812	2	590.234778	1178.455	-0.43205	-0.00025501	-0.16634	-9.8181E-05	-0.59839	-0.00035319	590.2346877891327	43.326	0.658	44.099	43.775	44.433	0.7724					30	12	3	0	0	0	0.0098085	2	16096	16096;16152		114.2	64.269	1	7302000			7194	867	5067	5115	7005;7006	7005					-0.1270858601828877
DTEDSYERDPC	11	Unmodified	_DTEDSYERDPC_					0	0	0			REV__CASR|p.G571R|1|0.4|ENSG00000036828|chr3:122282215-122282215|G/A|missense_variant	REV__CASR|p.G571R|1|0.4|ENSG00000036828|chr3:122282215-122282215|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	665.6467895507812	2	665.248614	1328.48267	-1.2023	-0.00079984	-1.2008	-0.00079881	-2.4031	-0.0015986	665.2478519197126	54.013	0.61377	54.764	54.404	55.018	0.75105					23	11	3	0	0	0	0.43152	1	20372	20372		36.506	6.6656	1	3910100	+		7195	15580	5068	5116	7007	7007					-0.1684272754871472
DTEEFFVKY	9	Unmodified	_DTEEFFVKY_					0	0	0		ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9	ENSG00000177200|ENST00000447540|CHD9	ENSG00000177200|ENST00000447540|CHD9	MULTI-MSMS	A375_MHC_IP_R2	2	589.6737670898438	2	589.274229	1176.53391	-0.39155	-0.00023073	-0.54833	-0.00032312	-0.93988	-0.00055385	589.7750632356434	85.781	0.60944	86.517	86.137	86.746	0.73601					17	11	2	0	0	0	0.0028027	2	32576	32576;32652		139.14	85.306	1	3682800			7196	8069	5069	5117	7008;7009	7008					-0.047299907216938664
DTEEFFVKY	9	Unmodified	_DTEEFFVKY_					0	0	0		ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9	ENSG00000177200|ENST00000447540|CHD9	ENSG00000177200|ENST00000447540|CHD9	MULTI-MATCH	A375_MHC_IP_R1	1		2	589.274229	1176.53391	-0.51214	-0.00030179	-1.5513	-0.00091412	-2.0634	-0.0012159	589.2741185133909	86.354	0.60695	86.354	86.022	86.629	0	-0.081278	-0.00068857	NaN	139.14	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4001000			7197	8069	5069	5117							-0.047299907216938664
DTEEKGHITY	10	Unmodified	_DTEEKGHITY_					0	0	0		EFCAB6|p.G899E|1|0.15|ENSG00000186976|chr22:43600249-43600249|C/T|missense_variant	EFCAB6|p.G899E|1|0.15|ENSG00000186976|chr22:43600249-43600249|C/T|missense_variant	EFCAB6|p.G899E|1|0.15|ENSG00000186976|chr22:43600249-43600249|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	597.1776123046875	2	596.777667	1191.54078	-0.1526	-9.1066E-05	1.0563	0.00063035	0.90365	0.00053928	596.7783055372628	108.79	0.91236	108.79	108.31	109.22	0					33	17	3	0	0	0	0.36067	2	39911	39911;40030		36.506	1.5741	1	4312900			7198	824	5070	5118	7010;7011	7010					-0.047326778411161285
DTEENKLIY	9	Unmodified	_DTEENKLIY_					0	0	0		nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	MULTI-MSMS	A375_MHC_IP_R1	1	563.176513671875	2	562.777136	1123.53972	-0.44931	-0.00025286	-0.19642	-0.00011054	-0.64573	-0.0003634	562.7764800138464	50.639	0.60941	50.639	50.408	51.017	0					23	11	3	0	0	0	0.032333	1	17929	17929		72.968	29.11	1	5615100			7199	2403	5071	5119	7012	7012					-0.01710892210030579
DTEENKLIY	9	Unmodified	_DTEENKLIY_					0	0	0		nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	MULTI-SECPEP	A375_MHC_IP_R2	2	563.176513671875	2	562.777136	1123.53972	-0.78487	-0.00044171	0.56834	0.00031985	-0.21653	-0.00012186	562.7770009662983	49.958	0.56062	50.712	50.445	51.006	0.75406					24	10	3	0	0	0	0.018833	1	18756	18756		118.07	68.135	1	4903400			7200	2403	5071	5119	7013	7013					-0.01710892210030579
DTEEQEYEE	9	Unmodified	_DTEEQEYEE_					0	0	0		nc|ENSG00000105048|P13805-2|TNNT1;nc|ENSG00000105048|P13805-3|TNNT1;ENSG00000105048|ENST00000588981|TNNT1	nc|ENSG00000105048|P13805-2|TNNT1	nc|ENSG00000105048|P13805-2|TNNT1	MULTI-MSMS	A375_MHC_IP_R1	1	586.6738891601562	2	586.217305	1170.42006	-0.2717	-0.00015927	0.57319	0.00033601	0.3015	0.00017674	586.2177423691314	59.305	0.30471	59.305	59.143	59.448	0					9	5	2	0	0	0	0.69674	1	21361	21361		7.2892	1.0834	1	1003300			7201	2563	5072	5120	7014	7014					-0.15833550345269032
DTEFENMDMY	10	Unmodified	_DTEFENMDMY_					0	0	0		nc|ENSG00000119778|Q9ULI0-2|ATAD2B;ENSG00000119778|ENST00000238789|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MSMS	A375_MHC_IP_R1	1	647.6939086914062	2	647.733754	1293.45295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.957	1	90.957	90.457	91.457	0								0	0	0	0.15451	1	33421	33421		6.2058	2.9245	1				7202	3622	5073	5121	7015	7015					-0.18203382818410319
DTEFHGGLHY	10	Unmodified	_DTEFHGGLHY_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-MSMS	A375_MHC_IP_R1	1	392.61114501953125	3	392.508722	1174.50434	-0.13818	-5.4238E-05	0.46852	0.0001839	0.33034	0.00012966	392.5088512941441	41.708	0.66244	41.708	41.47	42.132	0					30	12	4	0	0	0	0.11519	1	14390	14390		41.956	27.55	1	14061000			7203	9912	5074	5122	7016	7016					-0.07593509947173516
DTEFHGGLHY	10	Unmodified	_DTEFHGGLHY_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-MSMS	A375_MHC_IP_R1	1	588.6593017578125	2	588.259445	1174.50434	-0.53498	-0.00031471	0.52029	0.00030606	-0.014688	-8.6406E-06	588.2596713235889	41.702	1.0167	41.702	41.47	42.487	0					40	19	4	0	0	0	3.2562E-05	1	14398	14398		180.01	180.01	1	20871000			7204	9912	5074	5122	7017	7017					-0.07593509947173516
DTEFHGGLHY	10	Unmodified	_DTEFHGGLHY_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-MSMS	A375_MHC_IP_R2	2	588.6588745117188	2	588.259445	1174.50434	-0.82399	-0.00048472	0.17333	0.00010196	-0.65066	-0.00038276	588.2595158704291	40.994	0.45713	41.768	41.54	41.997	0.77451					16	8	2	0	0	0	3.1026E-05	1	15183	15183		164.52	128.39	1	19271000			7205	9912	5074	5122	7018	7018					-0.07593509947173516
DTEFHGGLHY	10	Unmodified	_DTEFHGGLHY_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-SECPEP	A375_MHC_IP_R2	2	392.90869140625	3	392.508722	1174.50434	-0.44411	-0.00017432	0.31381	0.00012317	-0.1303	-5.1145E-05	392.50879716370605	40.994	0.55872	41.768	41.54	42.098	0.77451					30	10	5	0	0	0	0.48464	1	15186	15186		29.841	23.649	1	15153000			7206	9912	5074	5122	7019	7019					-0.07593509947173516
DTEFPNFKY	9	Unmodified	_DTEFPNFKY_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	A375_MHC_IP_R1	1	582.2089233398438	2	580.766571	1159.51859	-0.061163	-3.5521E-05	-0.26716	-0.00015516	-0.32832	-0.00019068	580.7664639756215	82.502	1.7751	82.502	82.011	83.786	0					93	34	4	0	0	0	0.077132	1	30259	30259		54.774	35.517	1	58849000			7207	4401	5075	5123	7020	7020					-0.05478857518892255
DTEFPNFKY	9	Unmodified	_DTEFPNFKY_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-SECPEP	A375_MHC_IP_R2	2	581.1660766601562	2	580.766571	1159.51859	-0.36904	-0.00021432	-0.24662	-0.00014323	-0.61565	-0.00035755	580.7664417723195	81.93	1.7209	82.673	81.877	83.598	0.74293					93	33	4	0	0	0	0.011321	1	31017	31017		123.45	77.751	1	52608000			7208	4401	5075	5123	7021	7021					-0.05478857518892255
DTEGAVHIKY	10	Unmodified	_DTEGAVHIKY_					0	0	0			REV__nc|ENSG00000149177|Q12913-2|PTPRJ	REV__nc|ENSG00000149177|Q12913-2|PTPRJ	MULTI-MSMS	A375_MHC_IP_R2	2	567.1851806640625	2	566.785296	1131.55604	-0.6992	-0.00039629	2.9855	0.0016921	2.2863	0.0012958	566.7858055021408	36.495	0.61068	37.266	36.953	37.564	0.7709					30	11	4	0	0	0	0.44858	1	13306	13306		31.268	0	1	4778700	+		7209	19665	5076	5124	7022	7022					-0.004477662532735849
DTEGSYMCLCH	11	Unmodified	_DTEGSYMCLCH_					0	0	0		ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	MULTI-SECPEP	A375_MHC_IP_R2	2	420.2630920410156	3	420.156086	1257.44643	-0.12935	-5.4346E-05	-0.10144	-4.2622E-05	-0.23079	-9.6968E-05	420.15611927692703	32.465	0.40681	33.202	32.96	33.367	0.73691					12	7	2	0	0	0	0.99883	1	11605	11605		4.7159	0	1	2182000			7210	5307	5077	5125	7023	7023					-0.17199599250784559
DTEHVAESLY	10	Unmodified	_DTEHVAESLY_					0	0	0			REV__nc|ENSG00000107443|Q5T5M9-2|CCNJ	REV__nc|ENSG00000107443|Q5T5M9-2|CCNJ	MULTI-SECPEP	A375_MHC_IP_R2	2	581.7286987304688	2	582.264393	1162.51423	-0.40138	-0.00023371	0.84363	0.00049122	0.44226	0.00025751	582.2672552789824	65.003	0.71044	65.741	65.308	66.018	0.73811					17	13	2	0	0	0	0.85226	1	24673	24673		20.454	14.248	1	999260	+		7211	17485	5078	5126	7024	7024					-0.06052366732455994
DTEKELQALY	10	Unmodified	_DTEKELQALY_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-4|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-MSMS	A375_MHC_IP_R1	1	605.7034301757812	2	605.303518	1208.59248	-0.16599	-0.00010048	-0.25212	-0.00015261	-0.41812	-0.00025309	605.3032983573963	71.44	1.5691	71.44	71.005	72.575	0					86	30	5	0	0	0	0.0045532	2	25885	25885;26121		155.95	66.553	1	187810000			7212	1600	5079	5127	7025;7026	7025					-0.0034693414722823945
DTEKELQALY	10	Unmodified	_DTEKELQALY_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-4|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-MSMS	A375_MHC_IP_R2	2	605.7031860351562	2	605.303518	1208.59248	-0.50922	-0.00030823	-0.27672	-0.0001675	-0.78594	-0.00047573	605.3033162257074	70.846	1.5203	71.58	71.149	72.669	0.73421					92	29	5	0	0	0	2.6752E-05	2	26803	26803;27027		181.69	81.936	1	176090000			7213	1600	5079	5127	7027;7028	7027					-0.0034693414722823945
DTEKRWSSP	9	Unmodified	_DTEKRWSSP_					0	0	0			REV__ENST00000398125.5_1_4:2916713-2930247:+|nuORF	REV__ENST00000398125.5_1_4:2916713-2930247:+|nuORF	MSMS	A375_MHC_IP_R1	1	553.1875610351562	2	553.26727	1104.51999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.976	1	22.976	22.476	23.476	0								0	0	0	0.15486	1	6228	6228		10.824	0.75	1		+		7214	24373	5080	5128	7029	7029					-0.028092234301539065
DTELKQVAY	9	Unmodified	_DTELKQVAY_					0	0	0		ENST00000461993.1_1_1:40535258-40537202:+|nuORF;nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	534.7034301757812	2	533.774396	1065.53424	-0.67512	-0.00036036	0.30277	0.00016161	-0.37236	-0.00019875	533.7744608908313	43.853	0.40631	43.853	43.603	44.01	0					22	7	4	0	0	0	0.36834	1	15244	15244		26.268	12.76	1	6842200			7215	4316	5081	5129	7030	7030					0.004094289981367183
DTELKQVAY	9	Unmodified	_DTELKQVAY_					0	0	0		ENST00000461993.1_1_1:40535258-40537202:+|nuORF;nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	534.174072265625	2	533.774396	1065.53424	-0.65201	-0.00034803	-0.28594	-0.00015263	-0.93796	-0.00050066	533.7741326865395	43.135	0.60786	43.907	43.623	44.231	0.7724					24	11	3	0	0	0	0.022401	1	16032	16032		89.401	54.999	1	5786400			7216	4316	5081	5129	7031	7031					0.004094289981367183
DTEMVVPLE	9	Unmodified	_DTEMVVPLE_					0	0	0			REV__ENSG00000110851|ENST00000228437|PRDM4	REV__ENSG00000110851|ENST00000228437|PRDM4	MULTI-SECPEP	A375_MHC_IP_R1	1	517.1497192382812	2	516.749533	1031.48451	-0.27599	-0.00014262	0.72158	0.00037288	0.44559	0.00023026	516.7499952727356	49.758	0.45773	49.758	49.49	49.947	0					18	8	3	0	0	0	0.55359	1	17623	17623		15.847	3.3156	1	1961800	+		7217	17644	5082	5130	7032	7032					-0.029970220021368732
DTENEKNKW	9	Unmodified	_DTENEKNKW_					0	0	0		nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-MSMS	A375_MHC_IP_R2	2	582.22705078125	2	582.27001	1162.52547	-0.27937	-0.00016267	-1.2902	-0.00075127	-1.5696	-0.00091394	582.2675031417076	89.976	0.76765	90.708	90.236	91.004	0.7318					20	14	2	0	0	0	0.63811	1	34101	34101		12.532	0.89125	1	1638300			7218	5433	5083	5131	7033	7033					-0.04929544638321204
DTENRITW	8	Unmodified	_DTENRITW_					0	0	0		TEX15|p.D1841N|1|0.81|ENSG00000133863|chr8:30843497-30843497|C/T|missense_variant	TEX15|p.D1841N|1|0.81|ENSG00000133863|chr8:30843497-30843497|C/T|missense_variant	TEX15|p.D1841N|1|0.81|ENSG00000133863|chr8:30843497-30843497|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	518.148193359375	2	517.748713	1033.48287	-0.65003	-0.00033655	0.13326	6.8995E-05	-0.51677	-0.00026756	517.7486797200035	39.567	0.35402	39.567	39.34	39.694	0					12	6	3	0	0	0	0.87643	1	13577	13577		13.906	0.86358	1	3216100			7219	29330	5084	5132	7034	7034					-0.03252894975912568
DTENRITW	8	Unmodified	_DTENRITW_					0	0	0		TEX15|p.D1841N|1|0.81|ENSG00000133863|chr8:30843497-30843497|C/T|missense_variant	TEX15|p.D1841N|1|0.81|ENSG00000133863|chr8:30843497-30843497|C/T|missense_variant	TEX15|p.D1841N|1|0.81|ENSG00000133863|chr8:30843497-30843497|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1481323242188	2	517.748713	1033.48287	-1.0336	-0.00053515	0.057066	2.9546E-05	-0.97655	-0.00050561	517.7487975462337	38.722	0.45933	39.497	39.3	39.76	0.77451					12	8	2	0	0	0	0.81376	1	14291	14291		19.257	4.4187	1	3120200			7220	29330	5084	5132	7035	7035					-0.03252894975912568
DTEPEMDEY	9	Unmodified	_DTEPEMDEY_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.N3444Tfs*24|1|0.36|ENSG00000164199|chr5:90728837-90728837|A/-|frameshift_variant;ENST00000509621.1_3_5:89989878-90055411:+|nuORF	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MSMS	A375_MHC_IP_R1	1	564.7078247070312	2	564.705519	1127.39649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.075	1	84.075	83.575	84.575	0								0	0	0	0.15486	1	30784	30784		4.756	0.42677	1				7221	6801	5085	5133	7036	7036					-0.16211687383429307
DTERLIADY	9	Unmodified	_DTERLIADY_					0	0	0		ENST00000486457.5_1_3:113557756-113601627:+|nuORF;ENSG00000178075|ENST00000358160|GRAMD1C	ENST00000486457.5_1_3:113557756-113601627:+|nuORF	ENST00000486457.5_1_3:113557756-113601627:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	547.7092895507812	2	548.269478	1094.5244	-0.51294	-0.00028123	0.041543	2.2777E-05	-0.47139	-0.00025845	548.2694924283551	31.776	0.45932	31.776	31.565	32.024	0					13	8	2	0	0	0	0.54812	1	10222	10222		24.991	24.991	1	3469400			7222	8129	5086	5134	7037	7037					-0.019077590072356543
DTERLIVDY	9	Unmodified	_DTERLIVDY_					0	0	0		ENSG00000023171|ENST00000635736|GRAMD1B;nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF	ENSG00000023171|ENST00000635736|GRAMD1B	ENSG00000023171|ENST00000635736|GRAMD1B	MULTI-MSMS	A375_MHC_IP_R1	1	562.6846923828125	2	562.285128	1122.5557	-0.22014	-0.00012378	-0.014019	-7.8829E-06	-0.23416	-0.00013167	562.2850827503272	71.88	0.65556	71.88	71.615	72.271	0					29	12	3	0	0	0	0.0090499	1	26108	26108		100.09	60.141	1	13738000			7223	1072	5087	5135	7038	7038					-0.0006718597312556085
DTERLIVDY	9	Unmodified	_DTERLIVDY_					0	0	0		ENSG00000023171|ENST00000635736|GRAMD1B;nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF	ENSG00000023171|ENST00000635736|GRAMD1B	ENSG00000023171|ENST00000635736|GRAMD1B	MULTI-MSMS	A375_MHC_IP_R2	2	562.6849365234375	2	562.285128	1122.5557	-0.75729	-0.00042581	-0.037905	-2.1313E-05	-0.79519	-0.00044712	562.2851348403099	71.206	0.709	71.941	71.605	72.314	0.73421					32	13	3	0	0	0	0.012447	1	26966	26966		93.166	45.417	1	14174000			7224	1072	5087	5135	7039	7039					-0.0006718597312556085
DTETNLAGMY	10	Oxidation (M)	_DTETNLAGM(Oxidation (M))Y_		DTETNLAGM(1)Y		DTETNLAGM(65)Y	0	0	1		nc|ENSG00000066455|Q8TBA6-2|GOLGA5;ENSG00000066455|ENST00000163416|GOLGA5	nc|ENSG00000066455|Q8TBA6-2|GOLGA5	nc|ENSG00000066455|Q8TBA6-2|GOLGA5	MULTI-MSMS	A375_MHC_IP_R2	2	566.13623046875	2	565.737154	1129.45975	-0.69578	-0.00039363	-1.0804	-0.0006112	-1.7761	-0.0010048	565.7370681676349	56.151	0.51022	56.901	56.693	57.203	0.75015					15	9	2	0	0	0	0.092645	1	21246	21246		65.235	47.089	1	1370300			7225	1412	5088	5136	7040	7040		38			-0.09979701875545288
DTETVLKTTGY	11	Unmodified	_DTETVLKTTGY_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	A375_MHC_IP_R1	1	614.7095947265625	2	614.3088	1226.60305	-0.30806	-0.00018925	0.21774	0.00013376	-0.090319	-5.5484E-05	614.3094385538902	54.722	0.40765	54.722	54.516	54.924	0					10	7	2	0	0	0	0.0083568	1	19592	19592		93.938	53.699	1	1891700			7226	9794	5089	5137	7041	7041					-0.00118951492800079
DTEYAEWLRNH	11	Unmodified	_DTEYAEWLRNH_					0	0	0		nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	MULTI-MSMS	A375_MHC_IP_R2	2	717.7249755859375	2	717.325847	1432.63714	-0.59823	-0.00042913	-0.83011	-0.00059546	-1.4283	-0.0010246	717.3250527405978	85.586	0.40689	86.322	86.034	86.441	0.73602					12	7	2	0	0	0	0.73332	1	32575	32575		5.7319	0.83484	1	2736900			7227	5547	5090	5138	7042	7042					-0.06187110281189234
DTFADRKAY	9	Unmodified	_DTFADRKAY_					0	0	0			REV__nc|ENSG00000204842|Q99700-2|ATXN2	REV__nc|ENSG00000204842|Q99700-2|ATXN2	MULTI-SECPEP	A375_MHC_IP_R1	1	363.2453918457031	3	362.845334	1085.51417	0.22198	8.0545E-05	-0.20014	-7.262E-05	0.021839	7.9242E-06	362.8452226564914	33.823	0.45402	33.823	33.597	34.052	0					18	8	3	0	0	0	0.74412	1	11093	11093		6.6304	0.89852	1	5093800	+		7228	22543	5091	5139	7043	7043					-0.025163219418118388
DTFALQTFLS	10	Unmodified	_DTFALQTFLS_					0	0	0		ENST00000164305.9_1_15:55619826-55626172:+|nuORF	ENST00000164305.9_1_15:55619826-55626172:+|nuORF	ENST00000164305.9_1_15:55619826-55626172:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	572.1898803710938	2	571.790047	1141.56554	-0.44607	-0.00025506	0.35876	0.00020514	-0.087308	-4.9922E-05	571.7901582196587	52.971	0.81093	52.971	52.643	53.453	0					33	15	3	0	0	0	0.87043	1	18832	18832		15.248	1.3424	1	14136000			7229	10066	5092	5140	7044	7044					0.0004200203222808341
DTFCTYDDY	9	Unmodified	_DTFCTYDDY_					0	0	0		ENSG00000168282|ENST00000305386|MGAT2	ENSG00000168282|ENST00000305386|MGAT2	ENSG00000168282|ENST00000305386|MGAT2	MSMS	A375_MHC_IP_R1	1	571.6664428710938	2	571.70278	1141.39101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.645	1	84.645	84.145	85.145	0								0	0	0	0.15486	1	31010	31010		12.532	4.6214	1				7230	7283	5093	5141	7045	7045					-0.17403366175267365
DTFCTYDDY	9	Unmodified	_DTFCTYDDY_					0	0	0		ENSG00000168282|ENST00000305386|MGAT2	ENSG00000168282|ENST00000305386|MGAT2	ENSG00000168282|ENST00000305386|MGAT2	MSMS	A375_MHC_IP_R1	1	571.6978149414062	2	571.70278	1141.39101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.98	1	86.98	86.48	87.48	0								0	0	0	0.15486	1	31907	31907		11.64	3.047	1				7231	7283	5093	5141	7046	7046					-0.17403366175267365
DTFDGSPKWLL	11	Unmodified	_DTFDGSPKWLL_					0	0	0			REV__ENST00000471757.5_1_2:96687909-96690664:-|nuORF	REV__ENST00000471757.5_1_2:96687909-96690664:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	427.2839050292969	3	426.883677	1277.6292	-0.23862	-0.00010186	-0.037992	-1.6218E-05	-0.27661	-0.00011808	426.88366553267883	80.314	0.55747	80.314	80.034	80.592	0					23	10	3	0	0	0	0.53744	1	29301	29301		28.181	11.133	1	4307900	+		7232	21961	5094	5142	7047	7047					0.0014936246936940734
DTFDGSPKWLL	11	Unmodified	_DTFDGSPKWLL_					0	0	0			REV__ENST00000471757.5_1_2:96687909-96690664:-|nuORF	REV__ENST00000471757.5_1_2:96687909-96690664:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	427.28375244140625	3	426.883677	1277.6292	-0.081802	-3.492E-05	-0.33887	-0.00014466	-0.42067	-0.00017958	426.8834994528815	79.479	0.50732	80.224	79.946	80.453	0.74474					21	9	3	0	0	0	0.70919	1	30154	30154		14.838	4.5227	1	3661700	+		7233	21961	5094	5142	7048	7048					0.0014936246936940734
DTFDGSPKWLL	11	Unmodified	_DTFDGSPKWLL_					0	0	0			REV__ENST00000471757.5_1_2:96687909-96690664:-|nuORF	REV__ENST00000471757.5_1_2:96687909-96690664:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	426.883677	1277.6292	-0.23862	-0.00010186	-0.037992	-1.6218E-05	-0.27661	-0.00011808	426.88366553267883	80.314	0.55747	80.314	80.034	80.592	0	0.045095	0.00018174	NaN	28.181	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4307900	+		7234	21961	5094	5142							0.0014936246936940734
DTFDGSPKWLL	11	Unmodified	_DTFDGSPKWLL_					0	0	0			REV__ENST00000471757.5_1_2:96687909-96690664:-|nuORF	REV__ENST00000471757.5_1_2:96687909-96690664:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	426.883677	1277.6292	-0.081802	-3.492E-05	-0.33887	-0.00014466	-0.42067	-0.00017958	426.8834994528815	79.479	0.50732	80.224	79.946	80.453	0.74474	-0.045095	-0.00020358	NaN	28.181	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3661700	+		7235	21961	5094	5142							0.0014936246936940734
DTFDNGLIY	9	Unmodified	_DTFDNGLIY_					0	0	0			REV__nc|ENSG00000178425|Q5TFE4-2|NT5DC1	REV__nc|ENSG00000178425|Q5TFE4-2|NT5DC1	MULTI-MSMS	A375_MHC_IP_R2	2	529.64599609375	2	529.245472	1056.47639	-0.61741	-0.00032676	0.49722	0.00026315	-0.12019	-6.3609E-05	529.2455826124203	72.779	2.3883	73.514	72.721	75.109	0.7354					108	46	5	0	0	0	0.17328	2	27779	27779;27823		39.957	5.5556	1	19715000	+		7236	21504	5095	5143	7049;7050	7049					-0.049588329272637566
DTFFIFFY	8	Unmodified	_DTFFIFFY_					0	0	0			REV__ENSG00000239590|ENST00000340750|OR1J4	REV__ENSG00000239590|ENST00000340750|OR1J4	MULTI-SECPEP	A375_MHC_IP_R2	2	550.1875610351562	2	550.260394	1098.50623	-0.87004	-0.00047875	-1.1857	-0.00065245	-2.0557	-0.0011312	550.2596281372388	40.497	0.25265	41.272	41.082	41.335	0.77451					6	4	2	0	0	0	0.93416	1	14946	14946		14.582	7.8585	1	878520	+		7237	22771	5096	5144	7051	7051					-0.039078491912732716
DTFGDINYQE	10	Unmodified	_DTFGDINYQE_					0	0	0		EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant;EFTUD2|p.S944*|1|0.12|ENSG00000108883|chr17:44851362-44851363|CT/-|frameshift_variant;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;nc|ENSG00000108883|Q15029-2|EFTUD2;ENST00000590367.5_1_17:42931463-42950195:-|nuORF	EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	601.653564453125	2	601.254025	1200.4935	-0.68134	-0.00040966	0.57112	0.00034339	-0.11022	-6.627E-05	601.2542998643197	41.605	0.71511	41.605	41.317	42.032	0					33	13	4	0	0	0	0.54492	1	14357	14357		24.991	4.5764	1	9951800			7238	829	5097	5145	7052	7052					-0.0987295711211118
DTFGDINYQE	10	Unmodified	_DTFGDINYQE_					0	0	0		EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant;EFTUD2|p.S944*|1|0.12|ENSG00000108883|chr17:44851362-44851363|CT/-|frameshift_variant;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;nc|ENSG00000108883|Q15029-2|EFTUD2;ENST00000590367.5_1_17:42931463-42950195:-|nuORF	EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	601.6531372070312	2	601.254025	1200.4935	-0.74819	-0.00044985	0.45995	0.00027654	-0.28824	-0.00017331	601.2542217215764	41.078	0.76019	41.853	41.54	42.3	0.77451					35	14	3	0	0	0	0.47255	1	15208	15208		29.841	3.5724	1	9978500			7239	829	5097	5145	7053	7053					-0.0987295711211118
DTFGTLFNYS	10	Unmodified	_DTFGTLFNYS_					0	0	0			REV__HMSD|p.D71N|1|0.24|ENSG00000221887|chr18:63954546-63954546|G/A|missense_variant	REV__HMSD|p.D71N|1|0.24|ENSG00000221887|chr18:63954546-63954546|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	583.1641845703125	2	582.764029	1163.5135	-0.25086	-0.00014619	0.13311	7.7571E-05	-0.11775	-6.862E-05	582.7639964522995	75.767	1.1598	75.767	75.362	76.522	0					30	11	4	0	0	0	0.27133	2	27584	27584;27643		41.956	8.5321	1	6824400	+		7240	26749	5098	5146	7054;7055	7054					-0.061711613815077726
DTFGTLFNYS	10	Unmodified	_DTFGTLFNYS_					0	0	0			REV__HMSD|p.D71N|1|0.24|ENSG00000221887|chr18:63954546-63954546|G/A|missense_variant	REV__HMSD|p.D71N|1|0.24|ENSG00000221887|chr18:63954546-63954546|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	583.2110595703125	2	582.764029	1163.5135	-0.44801	-0.00026108	0.16899	9.8483E-05	-0.27902	-0.0001626	582.7639630563567	75.051	0.6591	75.789	75.416	76.075	0.73751					28	12	3	0	0	0	0.27133	2	28458	28446;28458		41.956	5.8285	1	7086900	+		7241	26749	5098	5146	7056;7057	7057					-0.061711613815077726
DTFGTLFNYS	10	Unmodified	_DTFGTLFNYS_					0	0	0			REV__HMSD|p.D71N|1|0.24|ENSG00000221887|chr18:63954546-63954546|G/A|missense_variant	REV__HMSD|p.D71N|1|0.24|ENSG00000221887|chr18:63954546-63954546|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	582.764029	1163.5135	-0.44801	-0.00026108	0.16899	9.8483E-05	-0.27902	-0.0001626	582.7639630563567	75.051	0.6591	75.789	75.416	76.075	0.73751	0.010901	2.7597E-05	NaN	41.956	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7086900	+		7242	26749	5098	5146							-0.061711613815077726
DTFKEIYSE	9	Unmodified	_DTFKEIYSE_					0	0	0			REV__ENSG00000169180|ENST00000304658|XPO6	REV__ENSG00000169180|ENST00000304658|XPO6	MULTI-MSMS	A375_MHC_IP_R2	2	566.1610107421875	2	566.263862	1130.51317	-0.46139	-0.00026127	1.632	0.00092412	1.1706	0.00066285	566.2627123693745	75.039	0.7081	75.777	75.315	76.023	0.73751					30	13	4	0	0	0	0.51106	1	28442	28442		19.257	4.4187	1	4623700	+		7243	20914	5099	5147	7058	7058					-0.04686581101373122
DTFQFQRVT	9	Unmodified	_DTFQFQRVT_					0	0	0			REV__nc|ENSG00000153707|P23468-2|PTPRD;REV__nc|ENSG00000105426|Q13332-7|PTPRS	REV__nc|ENSG00000105426|Q13332-7|PTPRS	MULTI-SECPEP	A375_MHC_IP_R1	1	571.1729125976562	2	571.285463	1140.55637	-0.22131	-0.00012643	0.20763	0.00011862	-0.013679	-7.8149E-06	571.2854579916924	34.957	0.45863	34.957	34.81	35.269	0					13	8	2	0	0	0	0.75164	1	11703	11703		9.3831	0	1	5940700	+		7244	17382;19845	5100	5148	7059	7059					-0.008283465334216089
DTFQRSVKADV	11	Unmodified	_DTFQRSVKADV_					0	0	0			REV__tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1	REV__tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	423.6578674316406	3	422.554331	1264.64116	-0.40606	-0.00017158	0.53051	0.00022417	0.12445	5.2587E-05	422.55471947797315	19.112	0.50227	19.715	19.483	19.986	0.60308					29	9	4	0	0	0	0.73195	1	5774	5774		7.0371	0.41363	1	6166900	+		7245	28689	5101	5149	7060	7060					0.01942979212526552
DTFRRRRWRRK	11	Unmodified	_DTFRRRRWRRK_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF;MYOF|p.A1785Pfs*8|1|0.41|ENSG00000138119|chr10:93323281-93323281|C/-|frameshift_variant	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MSMS	A375_MHC_IP_R1	1	544.880859375	3	544.985457	1631.93454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.54	1	105.54	105.04	106.04	0								0	0	0	0.1636	1	38748	38748		0	0	1				7246	4961	5102	5150	7061	7061					0.14385235896565973
DTFSAFGV	8	Unmodified	_DTFSAFGV_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4;ENST00000553618.1_1_14:67665960-67666731:+|nuORF	ENSG00000143368|ENST00000271628|SF3B4;ENST00000553618.1_1_14:67665960-67666731:+|nuORF	ENSG00000143368|ENST00000271628|SF3B4	MULTI-MSMS	A375_MHC_IP_R1	1	422.5987854003906	2	422.197793	842.381034	0.0060027	2.5343E-06	0.91411	0.00038594	0.92011	0.00038847	422.1987498722146	100.22	0.96259	100.22	99.975	100.94	0					44	18	3	0	0	0	0.72761	1	36828	36828		26.341	5.4701	1	10064000			7247	5375;13406	5103	5151	7062	7062					-0.046461413276574604
DTFSAFGV	8	Unmodified	_DTFSAFGV_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4;ENST00000553618.1_1_14:67665960-67666731:+|nuORF	ENSG00000143368|ENST00000271628|SF3B4;ENST00000553618.1_1_14:67665960-67666731:+|nuORF	ENSG00000143368|ENST00000271628|SF3B4	MULTI-MSMS	A375_MHC_IP_R2	2	422.1513671875	2	422.197793	842.381034	0.090607	3.8254E-05	0.96602	0.00040785	1.0566	0.00044611	422.198691587886	99.38	1.2719	100.14	99.808	101.08	0.75977					44	24	3	0	0	0	0.75322	1	37704	37704		19.439	1.304	1	10641000			7248	5375;13406	5103	5151	7063	7063					-0.046461413276574604
DTFSAFGV	8	Unmodified	_DTFSAFGV_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4;ENST00000553618.1_1_14:67665960-67666731:+|nuORF	ENSG00000143368|ENST00000271628|SF3B4;ENST00000553618.1_1_14:67665960-67666731:+|nuORF	ENSG00000143368|ENST00000271628|SF3B4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	422.197793	842.381034	0.0060027	2.5343E-06	0.91411	0.00038594	0.92011	0.00038847	422.1987498722146	100.22	0.96259	100.22	99.975	100.94	0	0.042105	-2.2916E-05	NaN	26.341	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10064000			7249	5375;13406	5103	5151							-0.046461413276574604
DTFSAFGV	8	Unmodified	_DTFSAFGV_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4;ENST00000553618.1_1_14:67665960-67666731:+|nuORF	ENSG00000143368|ENST00000271628|SF3B4;ENST00000553618.1_1_14:67665960-67666731:+|nuORF	ENSG00000143368|ENST00000271628|SF3B4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	422.197793	842.381034	0.090607	3.8254E-05	0.96602	0.00040785	1.0566	0.00044611	422.198691587886	99.38	1.2719	100.14	99.808	101.08	0.75977	-0.042105	2.0917E-05	NaN	26.341	44	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10641000			7250	5375;13406	5103	5151							-0.046461413276574604
DTFSSSNNH	9	Unmodified	_DTFSSSNNH_					0	0	0		ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	MULTI-SECPEP	A375_MHC_IP_R1	1	504.14617919921875	2	504.704503	1007.39445	-0.69752	-0.00035204	-0.15082	-7.6118E-05	-0.84834	-0.00042816	504.7046496867371	67.475	0.9178	67.475	66.887	67.804	0					19	17	2	0	0	0	0.78798	1	24573	24573		7.2892	4.4	1	1228300			7251	8600	5104	5152	7064	7064					-0.10894935286364671
DTFVHSNEW	9	Unmodified	_DTFVHSNEW_					0	0	0			REV__nc|ENSG00000115705|P07202-4|TPO	REV__nc|ENSG00000115705|P07202-4|TPO	MULTI-MSMS	A375_MHC_IP_R2	2	567.1692504882812	2	567.74617	1133.47779	-0.49702	-0.00028218	0.10944	6.2135E-05	-0.38758	-0.00022005	567.7459493845184	48.891	0.66279	49.649	49.332	49.995	0.75737					21	11	2	0	0	0	0.63811	1	18257	18257		12.532	1.7076	1	3633800	+		7252	17908	5105	5153	7065	7065					-0.08361198838520068
DTFYLNKGY	9	Unmodified	_DTFYLNKGY_					0	0	0			REV__ENSG00000116962|ENST00000264187|NID1	REV__ENSG00000116962|ENST00000264187|NID1	MULTI-SECPEP	A375_MHC_IP_R2	2	561.2033081054688	2	560.769114	1119.52368	-0.67459	-0.00037829	0.51039	0.00028621	-0.1642	-9.2076E-05	560.7692250017576	75.092	0.70944	75.829	75.365	76.075	0.73752					33	13	4	0	0	0	0.73363	1	28388	28388		15.847	3.3156	1	5803300	+		7253	17982	5106	5154	7066	7066					-0.0313055365627406
DTGAWTFDCI	10	Unmodified	_DTGAWTFDCI_					0	0	0			REV__nc|ENSG00000114948|O75077-3|ADAM23	REV__nc|ENSG00000114948|O75077-3|ADAM23	MULTI-MSMS	A375_MHC_IP_R2	2	565.2235717773438	2	564.736957	1127.45936	-0.77821	-0.00043948	-0.35531	-0.00020066	-1.1335	-0.00064014	564.7367611736465	60.918	0.40457	61.663	61.464	61.869	0.74504					11	7	2	0	0	0	0.45919	1	23140	23140		30.637	4.3684	1	1279300	+		7254	17848	5107	5155	7067	7067					-0.0992707680472904
DTGAWTFDCI	10	Unmodified	_DTGAWTFDCI_					0	0	0			REV__nc|ENSG00000114948|O75077-3|ADAM23	REV__nc|ENSG00000114948|O75077-3|ADAM23	MULTI-MATCH	A375_MHC_IP_R1	1		2	564.736957	1127.45936	-0.40614	-0.00022936	-0.37341	-0.00021088	-0.77954	-0.00044024	564.7366880578779	61.668	0.30473	61.668	61.534	61.839	0	0.0028607	-6.9791E-06	NaN	30.637	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1713200	+		7255	17848	5107	5155							-0.0992707680472904
DTGAWTFDCI	10	Unmodified	_DTGAWTFDCI_					0	0	0			REV__nc|ENSG00000114948|O75077-3|ADAM23	REV__nc|ENSG00000114948|O75077-3|ADAM23	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	564.736957	1127.45936	-0.77821	-0.00043948	-0.35531	-0.00020066	-1.1335	-0.00064014	564.7367611736465	60.918	0.40457	61.663	61.464	61.869	0.74504	-0.0028607	1.3457E-05	NaN	30.637	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1279300	+		7256	17848	5107	5155							-0.0992707680472904
DTGFGEDCDY	10	Unmodified	_DTGFGEDCDY_					0	0	0			REV__CON__Q28085	REV__CON__Q28085	MSMS	A375_MHC_IP_R2	2	561.1793212890625	2	561.190036	1120.36552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.226	1	31.945	31.445	32.445	0.71857								0	0	0	0.15308	1	11031	11031		10.824	2.9138	1		+	+	7257	15874	5108	5156	7068	7068					-0.18984840697703476
DTGIVEGTS	9	Unmodified	_DTGIVEGTS_					0	0	0			REV__tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1	REV__tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1	MSMS	A375_MHC_IP_R1	1	439.7733154296875	2	439.708722	877.402892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.114	1	20.114	19.614	20.614	0								0	0	0	0.15486	1	5112	5112		7.2892	1.5288	1		+		7258	28628	5109	5157	7069	7069					-0.04071381369737992
DTGNLQESL	9	Unmodified	_DTGNLQESL_					0	0	0		NR5A2|p.D9N|2|0.29|ENSG00000116833|chr1:200027872-200027872|G/A|missense_variant	NR5A2|p.D9N|2|0.29|ENSG00000116833|chr1:200027872-200027872|G/A|missense_variant	NR5A2|p.D9N|2|0.29|ENSG00000116833|chr1:200027872-200027872|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	489.1323547363281	2	488.732729	975.450904	-0.23176	-0.00011327	-0.59478	-0.00029069	-0.82655	-0.00040396	488.73235662200517	101.13	0.55638	101.13	100.79	101.34	0					17	10	2	0	0	0	0.71541	1	37173	37173		3.9444	0	1	1392400			7259	15029	5110	5158	7070	7070					-0.03780307449699194
DTGNYSVMAY	10	Unmodified	_DTGNYSVMAY_					0	0	0		nc|ENSG00000150275|Q96QU1-6|PCDH15;ENSG00000150275|ENST00000644397|PCDH15;nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15;nc|ENSG00000150275|Q96QU1-2|PCDH15;ENST00000463095.2_1_10:55581620-55664971:-|nuORF	nc|ENSG00000150275|Q96QU1-6|PCDH15	nc|ENSG00000150275|Q96QU1-6|PCDH15	MSMS	A375_MHC_IP_R1	1	560.6583251953125	2	560.734414	1119.45428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.476	1	62.476	61.976	62.976	0								0	0	0	0.15105	1	22566	22566		15.847	3.3156	1				7260	5839	5111	5159	7071	7071					-0.10067380667351244
DTGNYSVMAY	10	Unmodified	_DTGNYSVMAY_					0	0	0		nc|ENSG00000150275|Q96QU1-6|PCDH15;ENSG00000150275|ENST00000644397|PCDH15;nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15;nc|ENSG00000150275|Q96QU1-2|PCDH15;ENST00000463095.2_1_10:55581620-55664971:-|nuORF	nc|ENSG00000150275|Q96QU1-6|PCDH15	nc|ENSG00000150275|Q96QU1-6|PCDH15	MSMS	A375_MHC_IP_R2	2	560.6742553710938	2	560.734414	1119.45428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.817	1	62.56	62.06	63.06	0.74263								0	0	0	0.15105	1	23431	23431		15.847	1.0089	1				7261	5839	5111	5159	7072	7072					-0.10067380667351244
DTGPFHQRAFI	11	Unmodified	_DTGPFHQRAFI_					0	0	0			REV__ENSG00000070748|ENST00000337653|CHAT	REV__ENSG00000070748|ENST00000337653|CHAT	MULTI-SECPEP	A375_MHC_IP_R2	2	430.1373596191406	3	430.219283	1287.63602	-0.33628	-0.00014468	-0.20728	-8.9174E-05	-0.54356	-0.00023385	430.21907932518826	48.907	0.20514	49.664	49.485	49.69	0.75737					5	3	2	0	0	0	0.99681	1	18364	18364		2.4348	0	1	821840	+		7262	16579	5112	5160	7073	7073					0.003707201405632077
DTGPKPSPEQ	10	Unmodified	_DTGPKPSPEQ_					0	0	0			REV__nc|ENSG00000059122|Q4VC44-2|FLYWCH1	REV__nc|ENSG00000059122|Q4VC44-2|FLYWCH1	MSMS	A375_MHC_IP_R2	2	528.1868286132812	2	528.253828	1054.4931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.736	1	90.468	89.968	90.968	0.7318								0	0	0	0.15158	1	34146	34146		14.838	0.93222	1		+		7263	16438	5113	5161	7074	7074					-0.03196332041329697
DTGPLSAFIEV	11	Unmodified	_DTGPLSAFIEV_					0	0	0			REV__ENSG00000103264|ENST00000311635|FBXO31	REV__ENSG00000103264|ENST00000311635|FBXO31	MSMS	A375_MHC_IP_R1	1	575.029052734375	2	574.795329	1147.5761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.316	1	19.316	18.816	19.816	0								0	0	0	0.16108	1	4689	4689		13.042	0	1		+		7264	17265	5114	5162	7075	7075					0.008219846866495573
DTGPQNEHPE	10	Unmodified	_DTGPQNEHPE_					0	0	0		PHC2|p.G435E|1|0.1|ENSG00000134686|chr1:33354926-33354926|C/T|missense_variant	PHC2|p.G435E|1|0.1|ENSG00000134686|chr1:33354926-33354926|C/T|missense_variant	PHC2|p.G435E|1|0.1|ENSG00000134686|chr1:33354926-33354926|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	561.4443359375	2	562.236167	1122.45778	-0.46902	-0.0002637	0.43806	0.00024629	-0.030961	-1.7407E-05	562.2366069711445	68.135	0.4593	68.87	68.611	69.07	0.73512					13	8	2	0	0	0	0.88918	1	25881	25881		13.042	2.2185	1	906330			7265	15164	5115	5163	7076	7076					-0.09854994569127484
DTGQCLCLSY	10	Unmodified	_DTGQCLCLSY_					0	0	0		nc|ENSG00000091128|A4D0S4-3|LAMB4;ENSG00000091128|ENST00000388781|LAMB4;nc|ENSG00000091128|A4D0S4-2|LAMB4;ENST00000475469.1_1_7:107703197-107763609:-|nuORF;LAMB4|p.N1301Mfs*46|1|0.33|ENSG00000091128|chr7:108052113-108052113|A/-|frameshift_variant	nc|ENSG00000091128|A4D0S4-3|LAMB4	nc|ENSG00000091128|A4D0S4-3|LAMB4	MSMS	A375_MHC_IP_R2	2	551.72412109375	2	551.730817	1101.44708	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.757	1	54.508	54.008	55.008	0.75105								0	0	0	0.15451	1	20299	20299		6.2058	0	1				7266	1970	5116	5164	7077	7077					-0.09958436539432114
DTGQFSSDHS	10	Unmodified	_DTGQFSSDHS_					0	0	0			REV__ENSG00000175707|ENST00000320567|KDF1	REV__ENSG00000175707|ENST00000320567|KDF1	MSMS	A375_MHC_IP_R2	2	540.677001953125	2	540.715067	1079.41558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.499	1	36.263	35.763	36.763	0.76338								0	0	0	0.15372	1	12875	12875		8.7454	1.4562	1		+		7267	21360	5117	5165	7078	7078					-0.12094969977533765
DTGRAEDPV	9	Unmodified	_DTGRAEDPV_					0	0	0		ENST00000588800.5_1_17:76187135-76202061:+|nuORF	ENST00000588800.5_1_17:76187135-76202061:+|nuORF	ENST00000588800.5_1_17:76187135-76202061:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	480.6922607421875	2	480.225071	958.435589	-0.35906	-0.00017243	0.40457	0.00019429	0.045519	2.1859E-05	480.2252619191792	63.388	0.40746	63.388	63.121	63.529	0					13	7	2	0	0	0	0.5339	1	22809	22809		18.135	1.1927	1	1632700			7268	13770	5118	5166	7079	7079					-0.04529174246908951
DTGRAEDPV	9	Unmodified	_DTGRAEDPV_					0	0	0		ENST00000588800.5_1_17:76187135-76202061:+|nuORF	ENST00000588800.5_1_17:76187135-76202061:+|nuORF	ENST00000588800.5_1_17:76187135-76202061:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	480.624755859375	2	480.225071	958.435589	-0.60543	-0.00029074	-0.27446	-0.0001318	-0.8799	-0.00042255	480.22479502839485	62.738	0.35362	63.481	63.18	63.534	0.74263					10	6	2	0	0	0	0.60012	1	23753	23753		18.135	5.6034	1	1767400			7269	13770	5118	5166	7080	7080					-0.04529174246908951
DTGRAEDPV	9	Unmodified	_DTGRAEDPV_					0	0	0		ENST00000588800.5_1_17:76187135-76202061:+|nuORF	ENST00000588800.5_1_17:76187135-76202061:+|nuORF	ENST00000588800.5_1_17:76187135-76202061:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	480.225071	958.435589	-0.35906	-0.00017243	0.40457	0.00019429	0.045519	2.1859E-05	480.2252619191792	63.388	0.40746	63.388	63.121	63.529	0	-0.046703	0.00016121	NaN	18.135	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1632700			7270	13770	5118	5166							-0.04529174246908951
DTGTHTDFAY	10	Unmodified	_DTGTHTDFAY_					0	0	0			REV__ENSG00000185585|ENST00000373580|OLFML2A	REV__ENSG00000185585|ENST00000373580|OLFML2A	MULTI-MSMS	A375_MHC_IP_R2	2	565.1692504882812	2	564.235635	1126.45672	-0.84882	-0.00047893	-0.35168	-0.00019843	-1.2005	-0.00067736	564.2354656126544	58.796	0.71137	59.543	59.134	59.845	0.74714					34	13	3	0	0	0	0.70146	1	22306	22306		11.64	4.3511	1	6775700	+		7271	21901	5119	5167	7081	7081					-0.10145208938024552
DTHIRKHKI	9	Unmodified	_DTHIRKHKI_					0	0	0			REV__ZNF208|p.H1047Ifs*87|1|0.47|ENSG00000160321|chr19:21971895-21971895|G/-|frameshift_variant	REV__ZNF208|p.H1047Ifs*87|1|0.47|ENSG00000160321|chr19:21971895-21971895|G/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	383.2764892578125	3	383.228001	1146.66217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.153	1	25.153	24.653	25.653	0								0	0	0	0.15283	1	7285	7285		11.495	6.092	1		+		7272	20162	5120	5168	7082	7082					0.0947103410269392
DTHSEPWVWS	10	Unmodified	_DTHSEPWVWS_					0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	415.5840148925781	3	415.184127	1242.53055	0.30547	0.00012683	0.13912	5.7759E-05	0.44459	0.00018459	415.18393180355923	61.66	0.86868	61.66	61.279	62.148	0					58	16	5	0	0	0	0.54638	1	22170	22170		24.882	24.882	1	56274000			7273	13855	5121	5169	7083	7083					-0.08101240775704355
DTHSEPWVWS	10	Unmodified	_DTHSEPWVWS_					0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	622.6725463867188	2	622.272552	1242.53055	-0.47348	-0.00029463	0.70327	0.00043763	0.22979	0.00014299	622.2724904726199	61.652	1.7834	61.652	60.159	61.943	0					72	34	5	0	0	0	0.2515	1	22185	22185		61.357	35.089	1	24197000			7274	13855	5121	5169	7084	7084					-0.08101240775704355
DTHSEPWVWS	10	Unmodified	_DTHSEPWVWS_					0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	415.5841064453125	3	415.184127	1242.53055	-0.31269	-0.00012982	0.15666	6.5043E-05	-0.15603	-6.4781E-05	415.18393502405644	60.948	0.80714	61.693	61.314	62.121	0.74503					59	15	5	0	0	0	0.61662	1	23009	23009		19.626	7.9946	1	67243000			7275	13855	5121	5169	7085	7085					-0.08101240775704355
DTHSEPWVWS	10	Unmodified	_DTHSEPWVWS_					0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	622.6720581054688	2	622.272552	1242.53055	-1.0452	-0.00065043	0.78306	0.00048728	-0.26218	-0.00016315	622.2725428624226	60.917	0.70644	61.662	61.314	62.02	0.74504					41	13	4	0	0	0	0.35113	1	23037	23037		52.268	24.64	1	23572000			7276	13855	5121	5169	7086	7086					-0.08101240775704355
DTHVQEWLDP	10	Unmodified	_DTHVQEWLDP_					0	0	0		ENST00000424850.1_1_20:56174916-56175210:-|nuORF	ENST00000424850.1_1_20:56174916-56175210:-|nuORF	ENST00000424850.1_1_20:56174916-56175210:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	413.9576721191406	3	413.859532	1238.55677	-0.31232	-0.00012926	-0.12573	-5.2036E-05	-0.43806	-0.00018129	413.85942218199176	20.207	0.71209	20.817	20.549	21.262	0.61029					18	13	2	0	0	0	0.94651	1	6331	6331		0.62683	0	1	766110			7277	11780	5122	5170	7087	7087					-0.05296971604229839
DTIHMREV	8	Unmodified	_DTIHMREV_					0	0	0			REV__ENSG00000139180|ENST00000266544|NDUFA9	REV__ENSG00000139180|ENST00000266544|NDUFA9	MULTI-MSMS	A375_MHC_IP_R1	1	501.18682861328125	2	500.747659	999.480765	-0.15296	-7.6593E-05	-2.6303	-0.0013171	-2.7833	-0.0013937	500.74592830773014	42.815	0.30356	42.815	42.689	42.993	0					9	5	2	0	0	0	0.6817	1	14844	14844		40.449	15.775	1	1053100	+		7278	19139	5123	5171	7088	7088					-0.01899646985361869
DTIHSETSRT	10	Unmodified	_DTIHSETSRT_					0	0	0			REV__ENSG00000174373|ENST00000680220|RALGAPA1	REV__ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-SECPEP	A375_MHC_IP_R2	2	383.243896484375	3	382.851036	1145.53128	-0.44757	-0.00017135	-1.6286	-0.0006235	-2.0761	-0.00079485	382.8502411915203	22.57	0.66413	23.2	22.959	23.623	0.63014					18	12	2	0	0	0	0.93194	1	7304	7304		1.4551	0	1	1162600	+		7279	21281	5124	5172	7089	7089					-0.035664461266833314
DTIKKKYQP	9	Unmodified	_DTIKKKYQP_					0	0	0			REV__ENSG00000196748|ENST00000403376|CLPSL2	REV__ENSG00000196748|ENST00000403376|CLPSL2	MULTI-MSMS	A375_MHC_IP_R1	1	374.61700439453125	3	374.21688	1119.62881	0.14735	5.5143E-05	0.82328	0.00030808	0.97063	0.00036323	374.2170090585646	52.971	0.55625	52.971	52.694	53.25	0					19	10	3	0	0	0	0.70411	1	18885	18885		6.6304	2.1015	1	2373800	+		7280	22229	5125	5173	7090	7090					0.07377987540144204
DTINDSLIV	9	Unmodified	_DTINDSLIV_					0	0	0		ENSG00000080345|ENST00000444746|RIF1;nc|ENSG00000080345|Q5UIP0-2|RIF1	ENSG00000080345|ENST00000444746|RIF1	ENSG00000080345|ENST00000444746|RIF1	MULTI-SECPEP	A375_MHC_IP_R1	1	495.99151611328125	2	495.261122	988.507691	-0.2005	-9.9299E-05	0.15106	7.4815E-05	-0.049436	-2.4484E-05	495.26112722569115	42.628	0.50545	42.628	42.386	42.891	0					17	9	2	0	0	0	0.49205	1	14768	14768		11.495	0	1	6606600			7281	1712	5126	5174	7091	7091					0.012977401068155814
DTINSTKTEQP	11	Unmodified	_DTINSTKTEQP_					0	0	0		ENSG00000111727|ENST00000229330|HCFC2;HCFC2|p.T756Qfs*13|1|0.32|ENSG00000111727|chr12:104103160-104103164|ACATC/-|frameshift_variant	ENSG00000111727|ENST00000229330|HCFC2	ENSG00000111727|ENST00000229330|HCFC2	MULTI-SECPEP	A375_MHC_IP_R1	1	411.28094482421875	3	411.870097	1232.58846	0.23695	9.7594E-05	3.4847	0.0014352	3.7216	0.0015328	412.2056529847147	20.366	0.45658	20.366	20.079	20.536	0					14	8	3	0	0	0	0.99482	1	5280	5280		9.2438	3.0094	1	2131900			7282	3024	5127	5175	7092	7092					-0.01853023640956053
DTIQREEHM	9	Unmodified	_DTIQREEHM_					0	0	0		RERG|p.G72E|1|0.25|ENSG00000134533|chr12:15109495-15109495|C/T|missense_variant	RERG|p.G72E|1|0.25|ENSG00000134533|chr12:15109495-15109495|C/T|missense_variant	RERG|p.G72E|1|0.25|ENSG00000134533|chr12:15109495-15109495|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	579.1840209960938	2	579.764037	1157.51352	-0.58021	-0.00033639	0.18882	0.00010947	-0.39139	-0.00022692	579.7642210290542	60.319	0.46141	61.064	60.801	61.263	0.74503					13	8	2	0	0	0	0.75164	1	22870	22870		9.3831	4.0862	1	2005800			7283	15277	5128	5176	7093	7093					-0.05893484653188352
DTIQVALLM	9	Unmodified	_DTIQVALLM_					0	0	0			REV__nc|ENSG00000183765|O96017-12|CHEK2	REV__nc|ENSG00000183765|O96017-12|CHEK2	MULTI-SECPEP	A375_MHC_IP_R1	1	501.63580322265625	2	502.27826	1002.54197	-0.31296	-0.00015719	-2.686	-0.0013491	-2.9989	-0.0015063	502.777458960643	96.655	0.25204	96.655	96.478	96.73	0					6	4	2	0	0	0	0.28216	1	35495	35495		41.84	9.5341	1	518090	+		7284	27401	5129	5177	7094	7094					0.0407986499405979
DTISEALPEIC	11	Unmodified	_DTISEALPEIC_					0	0	0			REV__ENSG00000143384|ENST00000369026|MCL1	REV__ENSG00000143384|ENST00000369026|MCL1	MULTI-MSMS	A375_MHC_IP_R2	2	397.59002685546875	3	397.525161	1189.55365	-0.43683	-0.00017365	-1.1126	-0.00044227	-1.5494	-0.00061592	397.52470867046827	21.64	0.30604	22.259	22.03	22.336	0.61932					7	5	2	0	0	0	0.72728	1	6853	6853		6.2344	0	1	1640700	+		7285	19353	5130	5178	7095	7095					-0.03353982773273856
DTITANLFA	9	Unmodified	_DTITANLFA_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	A375_MHC_IP_R1	1	483.65008544921875	2	483.250557	964.486562	-0.26458	-0.00012786	-0.65848	-0.00031821	-0.92306	-0.00044607	483.2503128327085	57.063	0.35746	57.063	56.905	57.263	0					11	6	2	0	0	0	0.34064	1	20513	20513		27.629	4.8925	1	2451300	+		7286	19347	5131	5179	7096	7096					0.002897747979545784
DTIYDYCWYSL	11	Unmodified	_DTIYDYCWYSL_					0	0	0		ENSG00000141499|ENST00000396463|WRAP53	ENSG00000141499|ENST00000396463|WRAP53	ENSG00000141499|ENST00000396463|WRAP53	MULTI-SECPEP	A375_MHC_IP_R2	2	480.69189453125	3	481.204199	1440.59077	-0.70074	-0.0003372	-0.5203	-0.00025037	-1.221	-0.00058757	481.5384445071951	62.335	0.60978	63.078	62.774	63.383	0.74263					18	11	2	0	0	0	0.99883	1	23621	23621		2.6312	0	1	1487000			7287	5246	5132	5180	7097	7097					-0.11190311227505845
DTKENLEGTL	10	Unmodified	_DTKENLEGTL_					0	0	0		nc|ENSG00000182541|P53671-2|LIMK2;ENSG00000182541|ENST00000331728|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	MULTI-SECPEP	A375_MHC_IP_R2	2	560.5028686523438	2	560.280043	1118.54553	-0.57283	-0.00032095	1.814	0.0010164	1.2412	0.00069543	560.2826141038022	92.801	0.6072	93.54	93.089	93.696	0.73901					13	11	2	0	0	0	0.88918	1	35262	35262		18.146	1.2041	1	1299800			7288	8415	5133	5181	7098	7098					-0.0089979369838602
DTKNLALHI	9	Unmodified	_DTKNLALHI_					0	0	0		TAF8|p.E252K|1|0.28|ENSG00000137413|chr6:42068581-42068581|G/A|missense_variant	TAF8|p.E252K|1|0.28|ENSG00000137413|chr6:42068581-42068581|G/A|missense_variant	TAF8|p.E252K|1|0.28|ENSG00000137413|chr6:42068581-42068581|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	513.2105102539062	2	512.792924	1023.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.266	1	30.266	29.766	30.766	0								0	0	0	0.15486	1	9594	9594		13.508	0.97634	1				7289	29292	5134	5182	7099	7099					0.0604514533456495
DTKVDGNFTL	10	Unmodified	_DTKVDGNFTL_					0	0	0			REV__nc|ENSG00000112782|Q9NZA1-3|CLIC5	REV__nc|ENSG00000112782|Q9NZA1-3|CLIC5	MULTI-SECPEP	A375_MHC_IP_R1	1	554.7050170898438	2	555.277303	1108.54005	-0.56456	-0.00031349	-0.31918	-0.00017724	-0.88374	-0.00049072	555.2770948864843	47.354	0.66473	47.354	47.003	47.668	0					20	12	2	0	0	0	0.74754	1	16728	16728		17.113	0	1	1257400	+		7290	17755	5135	5183	7100	7100					-0.009874724901692389
DTLASHQLY	9	Unmodified	_DTLASHQLY_					0	0	0		nc|ENSG00000288674|P49810-2|PSEN2;nc|ENSG00000288674|P49810-3|PSEN2;ENSG00000143801|ENST00000366783|PSEN2	nc|ENSG00000288674|P49810-2|PSEN2	nc|ENSG00000288674|P49810-2|PSEN2	MULTI-MSMS	A375_MHC_IP_R1	1	523.6797485351562	2	524.258914	1046.50327	-0.37328	-0.0001957	-0.75561	-0.00039613	-1.1289	-0.00059183	524.2585121703546	54.511	0.65751	54.511	54.113	54.771	0					21	12	2	0	0	0	0.55471	1	19349	19349		17.113	0.1706	1	8920900			7291	5435	5136	5184	7101	7101					-0.018117243160759244
DTLDLNTRLY	10	Unmodified	_DTLDLNTRLY_					0	0	0		UGT2B7|p.G348D|1|0.2|ENSG00000171234|chr4:69107215-69107215|G/A|missense_variant	UGT2B7|p.G348D|1|0.2|ENSG00000171234|chr4:69107215-69107215|G/A|missense_variant	UGT2B7|p.G348D|1|0.2|ENSG00000171234|chr4:69107215-69107215|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	612.4724731445312	2	612.31696	1222.61937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.703	1	84.443	83.943	84.943	0.73962								0	0	0	0.15332	1	31816	31816		10.074	2.465	1				7292	30115	5137	5185	7102	7102					0.01696174463972966
DTLDPRWGSIY	11	Unmodified	_DTLDPRWGSIY_					0	0	0			REV__ENST00000326132.10_1_22:31583153-31597580:+|nuORF	REV__ENST00000326132.10_1_22:31583153-31597580:+|nuORF	MSMS	A375_MHC_IP_R2	2	441.6040954589844	3	441.550698	1321.63027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.855	1	26.515	26.015	27.015	0.65992								0	0	0	0.16124	1	8682	8682		12.228	0.59622	1		+		7293	23601	5138	5186	7103	7103					-0.017684231617295154
DTLDQTYQV	9	Unmodified	_DTLDQTYQV_					0	0	0			REV__SETDB1|p.G440D|1|0.21|ENSG00000143379|chr1:150949173-150949173|G/A|missense_variant	REV__SETDB1|p.G440D|1|0.21|ENSG00000143379|chr1:150949173-150949173|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	542.723876953125	2	541.753661	1081.49277	-0.61541	-0.0003334	3.2318	0.0017508	2.6164	0.0014174	541.7546117783222	79.752	0.7185	79.752	79.418	80.136	0					33	13	4	0	0	0	0.53367	1	29117	29117		18.146	2.2992	1	3544700	+		7294	27950	5139	5187	7104	7104					-0.044717517611843505
DTLFKAKNRQ	10	Unmodified	_DTLFKAKNRQ_					0	0	0			REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	MULTI-SECPEP	A375_MHC_IP_R1	1	406.9436950683594	3	407.56305	1219.66732	-0.28464	-0.00011601	0.99037	0.00040364	0.70574	0.00028763	407.56294034831274	24.723	0.15169	24.723	24.597	24.749	0					6	2	3	0	0	0	0.83355	1	7037	7037		10.899	0.58372	1	1602000	+		7295	27101	5140	5188	7105	7105					0.06627293174642546
DTLFKAKNRQ	10	Unmodified	_DTLFKAKNRQ_					0	0	0			REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	MULTI-MATCH	A375_MHC_IP_R2	2		3	407.56305	1219.66732	-0.2384	-9.7162E-05	-0.34638	-0.00014117	-0.58477	-0.00023833	407.5628635795018	24.086	0.20405	24.73	24.602	24.806	0.64368	0.0033894	-0.00019087	NaN	10.899	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1585400	+		7296	27101	5140	5188							0.06627293174642546
DTLGGTIFIV	10	Unmodified	_DTLGGTIFIV_					0	0	0			REV__OR1G1|p.G207Dfs*8|1|0.31|ENSG00000183024|chr17:3126932-3126932|C/-|frameshift_variant	REV__OR1G1|p.G207Dfs*8|1|0.31|ENSG00000183024|chr17:3126932-3126932|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	518.689208984375	2	518.289682	1034.56481	-0.5959	-0.00030885	-0.20153	-0.00010445	-0.79742	-0.0004133	518.2893994003023	58.563	0.61031	58.563	58.328	58.938	0					20	11	3	0	0	0	0.48072	1	21050	21050		37.974	7.3375	1	2687600	+		7297	27656	5141	5189	7106	7106					0.048912073831616
DTLGGTIFIV	10	Unmodified	_DTLGGTIFIV_					0	0	0			REV__OR1G1|p.G207Dfs*8|1|0.31|ENSG00000183024|chr17:3126932-3126932|C/-|frameshift_variant	REV__OR1G1|p.G207Dfs*8|1|0.31|ENSG00000183024|chr17:3126932-3126932|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	518.65869140625	2	518.289682	1034.56481	-1.0082	-0.00052255	-0.43713	-0.00022656	-1.4453	-0.00074911	518.2893973284743	57.684	0.45826	58.433	58.221	58.679	0.74894					16	8	3	0	0	0	0.48072	1	21808	21808		30.637	0	1	3226800	+		7298	27656	5141	5189	7107	7107					0.048912073831616
DTLHEEWSK	9	Unmodified	_DTLHEEWSK_					0	0	0		ENSG00000171617|ENST00000302351|ENC1;nc|ENSG00000171617|O14682-2|ENC1;ENC1|p.A371V|1|0.14|ENSG00000171617|chr5:74635374-74635374|G/A|missense_variant	ENSG00000171617|ENST00000302351|ENC1	ENSG00000171617|ENST00000302351|ENC1	MULTI-SECPEP	A375_MHC_IP_R2	2	382.6241455078125	3	382.180494	1143.51965	-0.35923	-0.00013729	0.64299	0.00024574	0.28376	0.00010845	382.1807413372447	23.677	0.50742	24.308	24.029	24.537	0.63014					10	9	2	0	0	0	0.65246	1	7760	7760		10.8	1.8233	1	1382000			7299	7622	5142	5190	7108	7108					-0.046366431500018734
DTLHLKTFDA	10	Unmodified	_DTLHLKTFDA_					0	0	0			REV__RAPGEF2|p.I1087Ffs*98|1|0.31|ENSG00000109756|chr4:159350159-159350159|A/-|frameshift_variant	REV__RAPGEF2|p.I1087Ffs*98|1|0.31|ENSG00000109756|chr4:159350159-159350159|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	387.9364318847656	3	387.536389	1159.58734	0.12794	4.958E-05	0.54986	0.00021309	0.6778	0.00026267	387.5363457173425	24.621	0.807	24.621	24.397	25.204	0					41	15	4	0	0	0	0.36067	1	7018	7018		25.997	11.779	1	66406000	+		7300	17594	5143	5191	7109	7109					0.013928067808137712
DTLHLKTFDA	10	Unmodified	_DTLHLKTFDA_					0	0	0			REV__RAPGEF2|p.I1087Ffs*98|1|0.31|ENSG00000109756|chr4:159350159-159350159|A/-|frameshift_variant	REV__RAPGEF2|p.I1087Ffs*98|1|0.31|ENSG00000109756|chr4:159350159-159350159|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	386.9243469238281	3	387.536389	1159.58734	0.12794	4.958E-05	0.54986	0.00021309	0.6778	0.00026267	387.5363457173425	24.621	0.807	24.621	24.397	25.204	0					41	15	4	0	0	0	0.83447	1	6986	6986		16.275	9.2375	1	66406000	+		7301	17594	5143	5191	7110	7110					0.013928067808137712
DTLHLKTFDA	10	Unmodified	_DTLHLKTFDA_					0	0	0			REV__RAPGEF2|p.I1087Ffs*98|1|0.31|ENSG00000109756|chr4:159350159-159350159|A/-|frameshift_variant	REV__RAPGEF2|p.I1087Ffs*98|1|0.31|ENSG00000109756|chr4:159350159-159350159|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	387.9360656738281	3	387.536389	1159.58734	-0.39158	-0.00015175	0.89048	0.00034509	0.4989	0.00019334	387.5365049663684	23.933	0.35767	24.563	24.384	24.742	0.63014					21	6	4	0	0	0	0.25355	1	7761	7761		31.636	12.01	1	64057000	+		7302	17594	5143	5191	7111	7111					0.013928067808137712
DTLHLKTFDA	10	Unmodified	_DTLHLKTFDA_					0	0	0			REV__RAPGEF2|p.I1087Ffs*98|1|0.31|ENSG00000109756|chr4:159350159-159350159|A/-|frameshift_variant	REV__RAPGEF2|p.I1087Ffs*98|1|0.31|ENSG00000109756|chr4:159350159-159350159|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	386.9241943359375	3	387.536389	1159.58734	-0.39158	-0.00015175	0.89048	0.00034509	0.4989	0.00019334	387.5365049663684	23.933	0.35767	24.563	24.384	24.742	0.63014					21	6	4	0	0	0	0.75488	1	7752	7752		16.275	5.3756	1	64057000	+		7303	17594	5143	5191	7112	7112					0.013928067808137712
DTLKVRREDPS	11	Unmodified	_DTLKVRREDPS_					0	0	0			REV__ENSG00000178093|ENST00000585580|TSSK6	REV__ENSG00000178093|ENST00000585580|TSSK6	MULTI-SECPEP	A375_MHC_IP_R2	2	439.6137390136719	3	439.237002	1314.68918	-0.58514	-0.00025701	1.5647	0.00068728	0.97957	0.00043026	439.57201812061635	18.962	0.28076	19.565	19.452	19.733	0.60308					6	5	2	0	0	0	0.99676	1	5821	5821		1.2148	0	1	2130400	+		7304	21485	5144	5192	7113	7113					0.04442053132561341
DTLPNAEW	8	Unmodified	_DTLPNAEW_					0	0	0			REV__chr1:154597976-154598076|107|15.87|0.9|4.14|-|2|ADAR,None|2	REV__chr1:154597976-154598076|107|15.87|0.9|4.14|-|2|ADAR,None|2	MULTI-MSMS	A375_MHC_IP_R2	2	473.6191711425781	2	473.219257	944.423961	-0.59571	-0.0002819	0.31516	0.00014914	-0.28055	-0.00013276	473.2193108263676	74.416	0.35709	75.153	74.907	75.264	0.73752					11	6	2	0	0	0	0.66714	1	28238	28238		42.095	13.608	1	1422100	+		7305	15666	5145	5193	7114	7114					-0.0504737127023418
DTLPNAEW	8	Unmodified	_DTLPNAEW_					0	0	0			REV__chr1:154597976-154598076|107|15.87|0.9|4.14|-|2|ADAR,None|2	REV__chr1:154597976-154598076|107|15.87|0.9|4.14|-|2|ADAR,None|2	MULTI-MATCH	A375_MHC_IP_R1	1		2	473.219257	944.423961	-0.45068	-0.00021327	0.48288	0.00022851	0.032203	1.5239E-05	473.2192645422122	74.984	0.35522	74.984	74.805	75.16	0	-0.084696	8.7454E-05	NaN	42.095	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1363600	+		7306	15666	5145	5193							-0.0504737127023418
DTLPNAEW	8	Unmodified	_DTLPNAEW_					0	0	0			REV__chr1:154597976-154598076|107|15.87|0.9|4.14|-|2|ADAR,None|2	REV__chr1:154597976-154598076|107|15.87|0.9|4.14|-|2|ADAR,None|2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	473.219257	944.423961	-0.59571	-0.0002819	0.31516	0.00014914	-0.28055	-0.00013276	473.2193108263676	74.416	0.35709	75.153	74.907	75.264	0.73752	0.084696	-7.1287E-05	NaN	42.095	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1422100	+		7307	15666	5145	5193							-0.0504737127023418
DTLPSIKHKV	10	Unmodified	_DTLPSIKHKV_					0	0	0		ENST00000496188.1_1_X:15792412-15793509:+|nuORF	ENST00000496188.1_1_X:15792412-15793509:+|nuORF	ENST00000496188.1_1_X:15792412-15793509:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	568.5521850585938	2	569.334956	1136.65536	-0.67196	-0.00038257	0.44899	0.00025562	-0.22297	-0.00012694	569.3347662703211	142.89	1.6494	142.89	142.38	144.03	0					62	32	3	0	0	0	0.9269	1	55112	55112		10.824	7.2274	1	9028600			7308	12720	5146	5194	7115	7115					0.09249676431454645
DTLRDCTHDE	10	Unmodified	_DTLRDCTHDE_					0	0	0		nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000100346|Q9P0X4-2|CACNA1I;nc|ENSG00000100346|Q9P0X4-4|CACNA1I;ENSG00000100346|ENST00000402142|CACNA1I	nc|ENSG00000100346|Q9P0X4-3|CACNA1I	nc|ENSG00000100346|Q9P0X4-3|CACNA1I	MULTI-SECPEP	A375_MHC_IP_R1	1	402.5802307128906	3	402.168148	1203.48262	-0.21563	-8.672E-05	0.41763	0.00016796	0.202	8.1236E-05	402.1682014672807	82.593	0.55775	82.593	82.316	82.874	0					14	10	2	0	0	0	0.94891	1	30196	30196		0.69767	0.69767	1	621040			7309	2163	5147	5195	7116	7116					-0.11098682758051837
DTLRDCTHDE	10	Unmodified	_DTLRDCTHDE_					0	0	0		nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000100346|Q9P0X4-2|CACNA1I;nc|ENSG00000100346|Q9P0X4-4|CACNA1I;ENSG00000100346|ENST00000402142|CACNA1I	nc|ENSG00000100346|Q9P0X4-3|CACNA1I	nc|ENSG00000100346|Q9P0X4-3|CACNA1I	MULTI-MATCH	A375_MHC_IP_R2	2		3	402.168148	1203.48262	-0.057434	-2.3098E-05	-0.065774	-2.6452E-05	-0.12321	-4.955E-05	402.1680828656609	81.865	0.40744	82.608	82.482	82.889	0.74293	0.0075475	-0.00020665	NaN	0.69767	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1059100			7310	2163	5147	5195							-0.11098682758051837
DTLRKEPVG	9	Unmodified	_DTLRKEPVG_					0	0	0			REV__nc|ENSG00000100207|Q9UGU0-2|TCF20	REV__nc|ENSG00000100207|Q9UGU0-2|TCF20	MULTI-SECPEP	A375_MHC_IP_R2	2	508.1573486328125	2	507.782556	1013.55056	-1.0116	-0.00051368	0.92201	0.00046818	-0.089599	-4.5497E-05	507.78256032081794	28.206	0.81216	28.884	28.401	29.214	0.67857					25	15	3	0	0	0	0.67483	1	9555	9555		6.2058	0	1	4580500	+		7311	17058	5148	5196	7117	7117					0.04432554954905754
DTLTQYVTL	9	Unmodified	_DTLTQYVTL_					0	0	0		nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-3|NLRC5;nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6634521484375	2	527.276772	1052.53899	-0.8573	-0.00045204	1.6135	0.00085077	0.75621	0.00039873	527.2777497383975	59.71	0.55565	60.457	60.098	60.653	0.74714					25	10	3	0	0	0	0.10103	1	22662	22662		53.833	15.859	1	3373500			7312	5190	5149	5197	7118	7118					0.014823131409002599
DTLYGQVKDL	10	Unmodified	_DTLYGQVKDL_					0	0	0			REV__tr|U7T207|U7T207_FUSNUGlycerol-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00422PE=4SV=1	REV__tr|U7T207|U7T207_FUSNUGlycerol-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00422PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	384.26824951171875	3	384.536278	1150.587	0.33925	0.00013045	3.9963	0.0015367	4.3356	0.0016672	384.87324903658714	34.983	0.25485	34.983	34.861	35.116	0					6	4	2	0	0	0	0.8866	1	11624	11624		9.2438	1.2984	1	1565300	+		7313	28714	5150	5198	7119	7119					0.017733870609617952
DTMSRLRKY	9	Unmodified	_DTMSRLRKY_					0	0	0			REV__ENSG00000183813|ENST00000330953|CCR4	REV__ENSG00000183813|ENST00000330953|CCR4	MULTI-SECPEP	A375_MHC_IP_R2	2	390.9642028808594	3	390.541369	1168.60228	-0.58035	-0.00022665	0.47344	0.0001849	-0.10691	-4.1753E-05	390.5415874148132	28.51	0.40581	29.189	28.808	29.214	0.67857					13	7	2	0	0	0	0.76187	1	9769	9769		4.5289	0	1	3853600	+		7314	21782	5151	5199	7120	7120					0.024719753771705655
DTMVPDTFY	9	Unmodified	_DTMVPDTFY_					0	0	0			REV__ENSG00000154370|ENST00000284551|TRIM11	REV__ENSG00000154370|ENST00000284551|TRIM11	MSMS	A375_MHC_IP_R1	1	544.6337890625	2	544.733883	1087.45321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.935	1	71.935	71.435	72.435	0								0	0	0	0.15486	1	26157	26157		7.9102	1.187	1		+		7315	19882	5152	5200	7121	7121					-0.08701595036268372
DTMYSKNDWN	10	Unmodified	_DTMYSKNDWN_					0	0	0			REV__ENSG00000239305|ENST00000237455|RNF103	REV__ENSG00000239305|ENST00000237455|RNF103	MULTI-MSMS	A375_MHC_IP_R2	2	425.5754089355469	3	425.176644	1272.5081	-0.46733	-0.0001987	-1.0218	-0.00043444	-1.4891	-0.00063314	425.17596249768224	60.948	0.7063	61.693	61.364	62.07	0.74503					22	13	2	0	0	0	0.70972	1	23076	23076		7.9454	0	1	5068100	+		7316	22768	5153	5201	7122	7122					-0.11725208235634454
DTNAVHWDL	9	Unmodified	_DTNAVHWDL_					0	0	0			REV__nc|ENSG00000177156|P37837-2|TALDO1	REV__nc|ENSG00000177156|P37837-2|TALDO1	MULTI-SECPEP	A375_MHC_IP_R1	1	535.20751953125	2	535.748713	1069.48287	-0.78186	-0.00041888	1.5145	0.00081139	0.73264	0.00039251	536.2502786770668	58.8	0.25346	58.8	58.685	58.938	0					7	4	2	0	0	0	0.58271	1	21171	21171		14.838	2.3067	1	952270	+		7317	21442	5154	5202	7123	7123					-0.049088949759152456
DTNDHAPWFTA	11	Unmodified	_DTNDHAPWFTA_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	A375_MHC_IP_R2	2	638.1744995117188	2	637.775459	1273.53637	-0.84284	-0.00053754	-0.29681	-0.0001893	-1.1396	-0.00072684	637.7751272170159	62.552	0.60757	63.295	62.976	63.584	0.74263					21	11	3	0	0	0	0.67989	1	23722	23722		17.113	17.113	1	2613700			7318	1791	5155	5203	7124	7124					-0.08946142264062473
DTNLLGLGAPR	11	Unmodified	_DTNLLGLGAPR_					0	0	0			REV__ENST00000513755.1_1_5:77638725-77656212:-|nuORF	REV__ENST00000513755.1_1_5:77638725-77656212:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	564.1813354492188	2	563.814387	1125.61422	-0.43293	-0.00024409	-1.2625	-0.00071179	-1.6954	-0.00095588	563.8160365112788	57.746	0.25494	57.746	57.669	57.923	0					5	4	2	0	0	0	0.88813	1	20743	20743		24.991	10.409	1	1079700	+		7319	24581	5156	5204	7125	7125					0.0564391539198823
DTNLVRVIILK	11	Unmodified	_DTNLVRVIILK_					0	0	0			REV__ENST00000345985.7_1_2:10712068-10712188:-|nuORF	REV__ENST00000345985.7_1_2:10712068-10712188:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	428.60546875	3	428.606367	1282.79727	-0.52837	-0.00022646	0.35448	0.00015193	-0.17389	-7.4531E-05	428.6064540219551	20.553	0.61014	21.163	20.752	21.362	0.61029					20	11	2	0	0	0	0.73679	1	6278	6278		2.4348	1.325	1	831870	+		7320	23772	5157	5205	7126	7126					0.16718469453780926
DTNPNSRVT	9	Unmodified	_DTNPNSRVT_					0	0	0			REV__ENSG00000171608|ENST00000377346|PIK3CD	REV__ENSG00000171608|ENST00000377346|PIK3CD	MSMS	A375_MHC_IP_R1	1	502.2024841308594	2	502.243795	1002.47304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.925	1	67.925	67.425	68.425	0								0	0	0	0.15486	1	24620	24620		10.824	0.64053	1		+		7321	21082	5158	5206	7127	7127					-0.028100829812842676
DTNRCVEPY	9	Unmodified	_DTNRCVEPY_					0	0	0		ENST00000530806.5_2_11:65635459-65636005:-|nuORF;ENST00000525392.1_1_11:65635271-65635812:-|nuORF;ENSG00000172638|ENST00000307998|EFEMP2	ENST00000530806.5_2_11:65635459-65636005:-|nuORF	ENST00000530806.5_2_11:65635459-65636005:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	549.6392211914062	2	548.740031	1095.46551	-1.0282	-0.00056422	-1.2237	-0.00067152	-2.252	-0.0012357	549.2404940237982	61.839	1.2641	62.582	62.17	63.434	0.74263					48	24	4	0	0	0	0.55818	1	23417	23417		16.942	10.219	1	3429200			7322	7726	5159	5207	7128	7128					-0.0784055857320709
DTNRKQRF	8	Unmodified	_DTNRKQRF_					0	0	0		nc|ENSG00000149743|Q86TN4-2|TRPT1;nc|ENSG00000149743|Q86TN4-3|TRPT1;ENSG00000149743|ENST00000317459|TRPT1;nc|ENSG00000149743|Q86TN4-4|TRPT1;ENST00000539436.5_1_11:63991868-63992452:-|nuORF	nc|ENSG00000149743|Q86TN4-2|TRPT1	nc|ENSG00000149743|Q86TN4-2|TRPT1	MSMS	A375_MHC_IP_R2	2	355.45977783203125	3	355.524707	1063.55229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.806	1	42.581	42.081	43.081	0.77451								0	0	0	0.16876	1	15529	15529		3.9444	0	1				7323	5827	5160	5208	7129	7129					0.023056087635040967
DTNSRYPSP	9	Unmodified	_DTNSRYPSP_					0	0	0			REV__ENSG00000107611|ENST00000377833|CUBN	REV__ENSG00000107611|ENST00000377833|CUBN	MULTI-MSMS	A375_MHC_IP_R1	1	519.6605834960938	2	518.738345	1035.46214	-0.4772	-0.00024754	-1.665	-0.00086368	-2.1422	-0.0011112	518.7382021997137	34.835	3.549	34.835	32.535	36.084	0					150	69	3	0	0	0	0.6324	1	11511	11511		13.042	3.6593	1	93373000	+		7324	17491	5161	5209	7130	7130					-0.054174853555878144
DTNVRVYY	8	Unmodified	_DTNVRVYY_					0	0	0		ENSG00000150627|ENST00000508596|WDR17;nc|ENSG00000150627|Q8IZU2|WDR17	ENSG00000150627|ENST00000508596|WDR17	ENSG00000150627|ENST00000508596|WDR17	MULTI-MSMS	A375_MHC_IP_R1	1	515.2261962890625	2	515.253631	1028.49271	-0.68837	-0.00035468	0.14389	7.4139E-05	-0.54448	-0.00028054	515.2538261437298	46.92	0.61555	46.92	46.647	47.263	0					25	11	3	0	0	0	0.75322	1	16618	16618		19.439	2.4967	1	7163800			7325	5852	5162	5210	7131	7131					-0.020397069705268223
DTPAYYMQRC	10	Unmodified	_DTPAYYMQRC_					0	0	0			REV__ARIH2|p.H265Y|1|0.25|ENSG00000177479|chr3:48973721-48973721|C/T|missense_variant	REV__ARIH2|p.H265Y|1|0.25|ENSG00000177479|chr3:48973721-48973721|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	623.7103881835938	2	624.262816	1246.51108	-0.75765	-0.00047297	-0.34935	-0.00021809	-1.107	-0.00069106	624.2624836417758	27.687	0.35331	28.366	28.2	28.553	0.67857					9	6	2	0	0	0	0.91556	1	9535	9535		6.2058	0	1	2913200	+		7326	15448	5163	5211	7132	7132					-0.10231656382484289
DTPEKRPASY	10	Unmodified	_DTPEKRPASY_					0	0	0		APCDD1L|p.T446A|1|0.32|ENSG00000198768|chr20:58460960-58460960|T/C|missense_variant	APCDD1L|p.T446A|1|0.32|ENSG00000198768|chr20:58460960-58460960|T/C|missense_variant	APCDD1L|p.T446A|1|0.32|ENSG00000198768|chr20:58460960-58460960|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	388.9281005859375	3	388.527894	1162.56185	0.2089	8.1165E-05	0.28305	0.00010997	0.49195	0.00019114	388.5279747847306	25.216	1.0164	25.216	24.749	25.765	0					29	19	2	0	0	0	0.50967	2	7289	7289;7374		29.437	5.0798	1	5596700			7327	158	5164	5212	7133;7134	7133					-0.01292667741608966
DTPFRSGEQ	9	Unmodified	_DTPFRSGEQ_					0	0	0		ENST00000428336.5_1_22:43547943-43548093:+|nuORF	ENST00000428336.5_1_22:43547943-43548093:+|nuORF	ENST00000428336.5_1_22:43547943-43548093:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	519.6353149414062	2	518.738345	1035.46214	-1.0195	-0.00052885	-1.4249	-0.00073915	-2.4444	-0.001268	518.7382689220403	34.159	3.4486	34.911	32.975	36.424	0.75225					158	67	4	0	0	0	0.68046	1	11922	11922		8.7454	0.15213	1	66591000			7328	11833	5165	5213	7135	7135					-0.05417485355565077
DTPIGYKY	8	Unmodified	_DTPIGYKY_					0	0	0			REV__tr|U7SRZ5|U7SRZ5_FUSNUUPF0042nucleotide-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01483PE=3SV=1	REV__tr|U7SRZ5|U7SRZ5_FUSNUUPF0042nucleotide-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01483PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	956.654052734375	1	956.472374	955.465098	-0.11325	-0.00010832	2.5896	0.0024769	2.4764	0.0023686	956.4728632521332	129.47	0.15186	129.47	129.35	129.5	0					4	2	2	0	0	0	0.972	1	49751	49751		4.3292	1.7518	1	6592400	+		7329	28410	5166	5214	7136	7136					-0.014416102307677647
DTPIGYKY	8	Unmodified	_DTPIGYKY_					0	0	0			REV__tr|U7SRZ5|U7SRZ5_FUSNUUPF0042nucleotide-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01483PE=3SV=1	REV__tr|U7SRZ5|U7SRZ5_FUSNUUPF0042nucleotide-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01483PE=3SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		1	956.472374	955.465098	-0.18049	-0.00017263	0.59468	0.00056879	0.41419	0.00039616	956.4734748758974	129.15	0.30399	129.39	129.21	129.52	0.23946	-0.041807	-0.0008085	NaN	4.3292	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7479300	+		7330	28410	5166	5214							-0.014416102307677647
DTPKAKTPDW	10	Unmodified	_DTPKAKTPDW_					0	0	0		FAM170A|p.R214K|1|0.85|ENSG00000164334|chr5:119634389-119634389|G/A|missense_variant	FAM170A|p.R214K|1|0.85|ENSG00000164334|chr5:119634389-119634389|G/A|missense_variant	FAM170A|p.R214K|1|0.85|ENSG00000164334|chr5:119634389-119634389|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	580.2208862304688	2	579.793121	1157.57169	-0.91556	-0.00053084	1.3201	0.0007654	0.40457	0.00023457	579.7939763644495	37.102	0.40518	37.873	37.665	38.07	0.7709					17	7	3	0	0	0	0.91556	1	13623	13623		14.838	6.6827	1	2150800			7331	13969	5167	5215	7137	7137					-0.0007947973624595761
DTPKKLTK	8	Unmodified	_DTPKKLTK_					0	0	0			REV__DNAH5|p.E236K|1|0.31|ENSG00000039139|chr5:13920572-13920572|C/T|missense_variant	REV__DNAH5|p.E236K|1|0.31|ENSG00000039139|chr5:13920572-13920572|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	464.997802734375	2	465.784567	929.554582	-0.29292	-0.00013644	0.29389	0.00013689	0.00097107	4.5231E-07	465.7847495347799	36.996	0.35362	36.996	36.895	37.249	0					10	6	2	0	0	0	0.972	1	12538	12538		7.2892	0	1	1178700	+		7332	16011	5168	5216	7138	7138					0.08698644448611503
DTPNRATFV	9	Unmodified	_DTPNRATFV_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MSMS	A375_MHC_IP_R1	1	510.6656188964844	2	510.759081	1019.50361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.447	1	52.447	51.947	52.947	0								0	0	0	0.15486	1	18652	18652		12.532	1.7076	1				7333	3128	5169	5217	7139	7139					-0.005363045962326396
DTPPQLPEL	9	Unmodified	_DTPPQLPEL_					0	0	0			REV__nc|ENSG00000104973|Q71SY5-5|MED25	REV__nc|ENSG00000104973|Q71SY5-5|MED25	MULTI-MSMS	A375_MHC_IP_R2	2	506.2334289550781	2	505.263665	1008.51278	-0.7368	-0.00037228	-2.1889	-0.001106	-2.9257	-0.0014783	505.2630092132122	67.089	0.96545	67.826	67.495	68.461	0.73631					28	18	3	0	0	0	0.4867	1	25403	25403		20.454	9.6297	1	2004800	+		7334	17354	5170	5218	7140	7140					0.008860439694331035
DTPRSPESPL	10	Unmodified	_DTPRSPESPL_					0	0	0			REV__SETD1A|p.P415S|1|0.52|ENSG00000099381|chr16:30964985-30964985|C/T|missense_variant	REV__SETD1A|p.P415S|1|0.52|ENSG00000099381|chr16:30964985-30964985|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	549.168701171875	2	549.774928	1097.5353	-1.1112	-0.00061091	1.6203	0.00089079	0.50908	0.00027988	550.2766975985545	58.569	1.6256	59.318	58.221	59.847	0.74895					54	31	3	0	0	0	0.8125	1	21777	21777		13.042	0	1	3156100	+		7335	27948	5171	5219	7141	7141					-0.009563566329461537
DTPSLRTVT	9	Unmodified	_DTPSLRTVT_					0	0	0		nc|ENSG00000155849|Q92556-3|ELMO1	nc|ENSG00000155849|Q92556-3|ELMO1	nc|ENSG00000155849|Q92556-3|ELMO1	MULTI-MSMS	A375_MHC_IP_R2	2	495.1578674316406	2	495.266739	988.518924	-0.65068	-0.00032226	-3.2079	-0.0015888	-3.8586	-0.001911	495.2650320910116	54.763	0.45916	55.514	55.269	55.729	0.75075					13	8	2	0	0	0	0.25276	1	20745	20745		34.102	3.4659	1	2515400			7336	14696	5172	5220	7142	7142					0.024205622009731087
DTQAKNAEG	9	Unmodified	_DTQAKNAEG_					0	0	0		nc|ENSG00000102048|Q96DX5-3|ASB9;nc|ENSG00000102048|Q96DX5-2|ASB9;ENST00000473862.5_1_X:15262630-15288056:-|nuORF;ENSG00000102048|ENST00000380488|ASB9	nc|ENSG00000102048|Q96DX5-3|ASB9	nc|ENSG00000102048|Q96DX5-3|ASB9	MSMS	A375_MHC_IP_R2	2	467.15264892578125	2	467.217246	932.419939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.978	1	26.638	26.138	27.138	0.65992								0	0	0	0.15486	1	8738	8738		6.2058	0.44535	1				7337	2353	5173	5221	7143	7143					-0.04897460763947947
DTQCFCEAPT	10	Unmodified	_DTQCFCEAPT_					0	0	0			REV__ENSG00000023516|ENST00000025301|AKAP11	REV__ENSG00000023516|ENST00000025301|AKAP11	MULTI-MSMS	A375_MHC_IP_R2	2	558.1918334960938	2	557.712624	1113.4107	-0.85256	-0.00047548	-1.1698	-0.00065243	-2.0224	-0.0011279	557.7119224838616	66.664	0.61127	67.4	67.087	67.698	0.73631					16	11	2	0	0	0	0.71361	1	25206	25206		6.2058	0.97511	1	1702700	+		7338	16279	5174	5222	7144	7144					-0.14147313436137665
DTQELPPPEG	10	Unmodified	_DTQELPPPEG_					0	0	0		ENSG00000163481|ENST00000295704|RNF25	ENSG00000163481|ENST00000295704|RNF25	ENSG00000163481|ENST00000295704|RNF25	MULTI-MSMS	A375_MHC_IP_R2	2	542.1530151367188	2	541.753661	1081.49277	-1.1056	-0.00059898	0.28879	0.00015645	-0.81684	-0.00044252	541.7537161219694	18.955	0.53321	19.559	19.452	19.986	0.60308					19	10	2	0	0	0	0.63639	1	5782	5782		18.146	5.1039	1	7815000			7339	6670	5175	5223	7145	7145					-0.04471751761207088
DTQGKPAIAH	10	Unmodified	_DTQGKPAIAH_					0	0	0		ACVR1C|p.G312D|1|0.15|ENSG00000123612|chr2:157544453-157544453|C/T|missense_variant	ACVR1C|p.G312D|1|0.15|ENSG00000123612|chr2:157544453-157544453|C/T|missense_variant	ACVR1C|p.G312D|1|0.15|ENSG00000123612|chr2:157544453-157544453|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	519.186767578125	2	519.272355	1036.53016	-0.469	-0.00024354	-0.47086	-0.0002445	-0.93985	-0.00048804	519.2721938851068	61.999	1.2777	61.999	61.126	62.403	0					42	24	3	0	0	0	0.87163	1	22117	22117		19.257	3.4098	1	7303700			7340	40	5176	5224	7146	7146					0.013353842950891703
DTQLNRYI	8	Unmodified	_DTQLNRYI_					0	0	0		ENSG00000164654|ENST00000340080|MIOS;ENST00000493227.1_1_7:7622738-7646720:+|nuORF	ENSG00000164654|ENST00000340080|MIOS	ENSG00000164654|ENST00000340080|MIOS	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1976928710938	2	511.766906	1021.51926	-0.99378	-0.00050858	-0.64818	-0.00033172	-1.642	-0.0008403	511.7652340654128	35.32	0.25259	36.083	35.98	36.233	0.76338					6	4	2	0	0	0	0.90775	1	12780	12780		14.838	0	1	711870			7341	6860	5177	5225	7147	7147					0.009359819208043518
DTQNHLSAGQY	11	Unmodified	_DTQNHLSAGQY_					0	0	0			REV__ENSG00000148400|ENST00000651671|NOTCH1	REV__ENSG00000148400|ENST00000651671|NOTCH1	MULTI-SECPEP	A375_MHC_IP_R1	1	616.6534423828125	2	617.278366	1232.54218	-0.50256	-0.00031022	0.17557	0.00010838	-0.32698	-0.00020184	617.278328214715	28.899	0.25138	28.899	28.745	28.996	0					6	4	2	0	0	0	0.99018	1	8996	8996		7.609	1.4032	1	1201900	+		7342	19629	5178	5226	7148	7148					-0.06479043752369762
DTQPLHMYV	9	Unmodified	_DTQPLHMYV_					0	0	0			REV__nc|ENSG00000181222|P24928|POLR2A	REV__nc|ENSG00000181222|P24928|POLR2A	MSMS	A375_MHC_IP_R1	1	368.5769958496094	3	368.511187	1102.51173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.85	1	39.85	39.35	40.35	0								0	0	0	0.15486	1	13655	13655		2.7352	0.82882	1		+		7343	21643	5179	5227	7149	7149					-0.035424936711251576
DTQWEQLQT	9	Unmodified	_DTQWEQLQT_					0	0	0		ENST00000562590.5_1_16:28922190-28936514:-|nuORF;nc|ENSG00000177548|Q9H5N1-2|RABEP2;ENSG00000177548|ENST00000358201|RABEP2	ENST00000562590.5_1_16:28922190-28936514:-|nuORF	ENST00000562590.5_1_16:28922190-28936514:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	383.243896484375	3	383.512132	1147.51457	-0.44916	-0.00017226	-4.3701	-0.001676	-4.8193	-0.0018483	383.84414356975066	23.075	0.25587	23.705	23.521	23.777	0.63014					5	4	2	0	0	0	0.79429	1	7304	7304		0.77653	0	1	1108900			7344	8090	5180	5228	7150	7150					-0.05328947012617391
DTRDKVKLV	9	Unmodified	_DTRDKVKLV_					0	0	0			REV__ENSG00000111252|ENST00000341259|SH2B3	REV__ENSG00000111252|ENST00000341259|SH2B3	MULTI-MSMS	A375_MHC_IP_R1	1	358.5827941894531	3	358.548629	1072.62406	-0.085716	-3.0733E-05	1.2516	0.00044877	1.1659	0.00041804	358.5490328513544	23.337	0.20468	23.337	23.227	23.432	0					6	3	2	0	0	0	0.66474	1	6425	6425		10.151	3.4274	1	1821300	+		7345	17659	5181	5229	7151	7151					0.09065103397369967
DTRDNYTF	8	Unmodified	_DTRDNYTF_					0	0	0			REV__nc|ENSG00000115414|P02751-2|FN1	REV__nc|ENSG00000115414|P02751-2|FN1	MULTI-MSMS	A375_MHC_IP_R2	2	516.2110595703125	2	516.225071	1030.43559	-1.0557	-0.000545	0.15194	7.8435E-05	-0.90379	-0.00046656	516.2253840965257	49.564	0.55619	50.321	49.995	50.551	0.75737					22	9	3	0	0	0	0.77603	1	18694	18694		9.3474	2.6243	1	3461000	+		7346	27187	5182	5230	7152	7152					-0.07841174246914306
DTRDNYTF	8	Unmodified	_DTRDNYTF_					0	0	0			REV__nc|ENSG00000115414|P02751-2|FN1	REV__nc|ENSG00000115414|P02751-2|FN1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	516.225071	1030.43559	-0.5446	-0.00028113	0.5058	0.00026111	-0.038796	-2.0028E-05	516.2253911759398	50.335	0.71592	50.335	49.947	50.663	0	0.0069316	0.00027363	NaN	9.3474	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2713200	+		7347	27187	5182	5230							-0.07841174246914306
DTRDNYTF	8	Unmodified	_DTRDNYTF_					0	0	0			REV__nc|ENSG00000115414|P02751-2|FN1	REV__nc|ENSG00000115414|P02751-2|FN1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	516.225071	1030.43559	-1.0557	-0.000545	0.15194	7.8435E-05	-0.90379	-0.00046656	516.2253840965257	49.564	0.55619	50.321	49.995	50.551	0.75737	-0.0069316	-9.1714E-05	NaN	9.3474	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3461000	+		7348	27187	5182	5230							-0.07841174246914306
DTRGQLQLSFY	11	Unmodified	_DTRGQLQLSFY_					0	0	0			REV__PCDHGA11|p.R184Q|1|0.36|ENSG00000253873|chr5:141421778-141421778|G/A|missense_variant	REV__PCDHGA11|p.R184Q|1|0.36|ENSG00000253873|chr5:141421778-141421778|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	443.62615966796875	3	443.226215	1326.65681	-0.40865	-0.00018112	0.045021	1.9954E-05	-0.36363	-0.00016117	443.22618858171296	32.605	0.30585	33.342	33.162	33.468	0.73692					9	5	2	0	0	0	1.0002	1	11658	11658		0.45452	0	1	4036300	+		7349	27739	5183	5231	7153	7153					0.006552657295742392
DTRIIRAKI	9	Unmodified	_DTRIIRAKI_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	A375_MHC_IP_R2	2	362.9254455566406	3	362.564502	1084.67168	-0.54713	-0.00019837	-0.27383	-9.9281E-05	-0.82096	-0.00029765	362.56442023548937	33.494	0.45681	34.246	34.043	34.5	0.75225					21	8	3	0	0	0	0.2989	1	11962	11962		30.703	1.2663	1	10135000			7350	5371	5184	5232	7154	7154					0.1327280238822368
DTRIWWMSP	9	Unmodified	_DTRIWWMSP_					0	0	0			REV__ENST00000349714.9_1_20:33971865-33981976:-|nuORF	REV__ENST00000349714.9_1_20:33971865-33981976:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	397.280517578125	3	397.858698	1190.55426	-0.42121	-0.00016758	-1.557	-0.00061948	-1.9782	-0.00078706	397.8584994992924	23.155	0.15309	23.785	23.675	23.828	0.63014					4	2	2	0	0	0	0.78753	1	7418	7418		0.20686	0	1	933470	+		7351	23793	5185	5233	7155	7155					-0.03339098542915053
DTRKELNY	8	Unmodified	_DTRKELNY_					0	0	0			REV__ENSG00000137766|ENST00000260323|UNC13C;REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	A375_MHC_IP_R1	1	519.6849975585938	2	519.764363	1037.51417	-0.52089	-0.00027074	0.62694	0.00032586	0.10604	5.5116E-05	520.2666221955326	73.693	0.25329	73.693	73.589	73.843	0					6	4	2	0	0	0	0.77488	1	26809	26809		13.508	0.97634	1	493890	+		7352	22403;19030	5186	5234	7156	7156					-0.0030832194181584782
DTRKELNY	8	Unmodified	_DTRKELNY_					0	0	0			REV__ENSG00000137766|ENST00000260323|UNC13C;REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	519.764363	1037.51417	-0.52089	-0.00027074	0.62694	0.00032586	0.10604	5.5116E-05	520.2666221955326	73.693	0.25329	73.693	73.589	73.843	0	0	0	NaN	13.508	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	493890	+		7353	22403;19030	5186	5234							-0.0030832194181584782
DTRQEWFMRRR	11	Unmodified	_DTRQEWFMRRR_					0	0	0			REV__nc|ENSG00000225830|P0DP91|ERCC6	REV__nc|ENSG00000225830|P0DP91|ERCC6	MSMS	A375_MHC_IP_R1	1	790.67919921875	2	790.896783	1579.77901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.387	1	73.387	72.887	73.887	0								0	0	0	0.16297	1	26719	26719		3.2813	2.9743	1		+		7354	27503	5187	5235	7157	7157					0.01231404260124691
DTRRQQTV	8	Unmodified	_DTRRQQTV_					0	0	0			REV__ENST00000415732.1_3_10:127569532-127584855:-|nuORF	REV__ENST00000415732.1_3_10:127569532-127584855:-|nuORF	MSMS	A375_MHC_IP_R1	1	502.2041015625	2	502.267604	1002.52066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.004	1	97.004	96.504	97.504	0								0	0	0	0.16876	1	35644	35644		32.305	1.6689	1		+		7355	24522	5188	5236	7158	7158					0.01949616009574129
DTRSGFSAYW	10	Unmodified	_DTRSGFSAYW_					0	0	0		ENSG00000107611|ENST00000377833|CUBN	ENSG00000107611|ENST00000377833|CUBN	ENSG00000107611|ENST00000377833|CUBN	MULTI-SECPEP	A375_MHC_IP_R1	1	397.24365234375	3	397.180605	1188.51999	-0.40933	-0.00016258	-0.3413	-0.00013556	-0.75063	-0.00029814	397.51455617764776	23.61	0.65988	23.61	23.483	24.143	0					15	12	2	0	0	0	0.92227	1	6739	6739		7.9454	3.4165	1	11637000			7356	2745	5189	5237	7159	7159					-0.06673223430152575
DTRVNEWVI	9	Unmodified	_DTRVNEWVI_					0	0	0		ENSG00000180016|ENST00000322608|OR1E1;ENSG00000127780|ENST00000248384|OR1E2	ENSG00000180016|ENST00000322608|OR1E1	ENSG00000180016|ENST00000322608|OR1E1	MULTI-MSMS	A375_MHC_IP_R1	1	567.7007446289062	2	566.293288	1130.57202	-0.49614	-0.00028096	0.23377	0.00013238	-0.26237	-0.00014858	566.2933528760617	28.206	1.1086	28.206	27.836	28.945	0					63	21	4	0	0	0	0.67152	1	8835	8835		9.3831	0	1	169260000			7357	8273	5190	5238	7160	7160					0.011959399836086959
DTRYRHFF	8	Unmodified	_DTRYRHFF_					0	0	0			REV__ENST00000553292.1_1_14:20915401-20915491:-|nuORF	REV__ENST00000553292.1_1_14:20915401-20915491:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	381.5888977050781	3	381.189435	1140.54648	-0.45641	-0.00017398	-0.97232	-0.00037064	-1.4287	-0.00054461	381.189051990764	24.968	0.61006	25.611	25.314	25.924	0.64368					27	11	4	0	0	0	0.97144	1	8313	8313		6.7232	0	1	5146000	+		7358	26064	5191	5239	7161	7161					-0.018174897481685548
DTSDYLRP	8	Unmodified	_DTSDYLRP_					0	0	0		nc|ENSG00000143127|O75578-3|ITGA10;ENSG00000143127|ENST00000369304|ITGA10	nc|ENSG00000143127|O75578-3|ITGA10	nc|ENSG00000143127|O75578-3|ITGA10	MULTI-MSMS	A375_MHC_IP_R1	1	483.6979675292969	2	483.729989	965.445425	-0.29125	-0.00014089	0.22915	0.00011084	-0.062102	-3.0041E-05	483.73005419989914	43.727	0.8656	43.727	43.351	44.216	0					48	16	4	0	0	0	0.16799	2	15248	15142;15248		74.423	3.2892	1	45148000			7359	5347	5192	5240	7162;7163	7163					-0.038679862415278876
DTSERKIEF	9	Unmodified	_DTSERKIEF_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-SECPEP	A375_MHC_IP_R2	2	375.92413330078125	3	375.524261	1123.55095	-0.059157	-2.2215E-05	1.0807	0.00040584	1.0216	0.00038363	375.5241690569482	20.892	0.60777	21.502	21.109	21.717	0.61029					28	11	4	0	0	0	0.71541	1	6532	6532		7.609	4.0219	1	2203900			7360	3557	5193	5241	7164	7164					-0.005880701158957891
DTSHKVEKF	9	Unmodified	_DTSHKVEKF_					0	0	0			REV__ENST00000451085.5_1_7:110731500-110737175:+|nuORF	REV__ENST00000451085.5_1_7:110731500-110737175:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	364.5830383300781	3	364.189101	1089.54547	0.041673	1.5177E-05	0.52727	0.00019202	0.56894	0.0002072	364.1894100545618	27.406	0.50923	28.084	27.792	28.301	0.67857					14	9	2	0	0	0	0.73363	1	9231	9231		10.8	2.644	1	5091600	+		7361	24891	5194	5242	7165	7165					0.0042825109228488145
DTSHVVPEFG	10	Unmodified	_DTSHVVPEFG_					0	0	0			REV__ENSG00000154175|ENST00000471714|ABI3BP	REV__ENSG00000154175|ENST00000471714|ABI3BP	MULTI-SECPEP	A375_MHC_IP_R2	2	543.6661987304688	2	544.256371	1086.49819	-0.84321	-0.00045892	-0.93997	-0.00051158	-1.7832	-0.00097051	544.2560865695983	64.986	1.0166	65.724	65.206	66.222	0.73812					33	19	2	0	0	0	0.38158	1	24822	24822		43.858	13.222	1	3161500	+		7362	19868	5195	5243	7166	7166					-0.04160028178716857
DTSKPYSPV	9	Unmodified	_DTSKPYSPV_					0	0	0			REV__CCDC54|p.L208F|1|0.18|ENSG00000138483|chr3:107378209-107378209|C/T|missense_variant	REV__CCDC54|p.L208F|1|0.18|ENSG00000138483|chr3:107378209-107378209|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	497.1572265625	2	497.248015	992.481476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.604	1	46.37	45.87	46.87	0.76519								0	0	0	0.14851	1	17053	17053		24.021	1.2843	1		+		7363	15595	5196	5244	7167	7167					-0.015065290646589347
DTSLDAIVVM	10	Unmodified	_DTSLDAIVVM_					0	0	0			REV__nc|ENSG00000132016|Q0VDD7-2|BRME1	REV__nc|ENSG00000132016|Q0VDD7-2|BRME1	MULTI-SECPEP	A375_MHC_IP_R1	1	532.1219482421875	2	532.270632	1062.52671	-0.79141	-0.00042124	0.010466	5.5709E-06	-0.78094	-0.00041567	532.2703727595476	38.041	0.81538	38.041	37.556	38.371	0					12	8	2	0	0	0	0.85226	1	12912	12912		14.838	0.93222	1	1541000	+		7364	18636	5197	5245	7168	7168					-0.002050465937827539
DTSRFSDEF	9	Unmodified	_DTSRFSDEF_					0	0	0		ADAM10|p.L81R|1|0.41|ENSG00000137845|chr15:58682279-58682279|A/C|missense_variant	ADAM10|p.L81R|1|0.41|ENSG00000137845|chr15:58682279-58682279|A/C|missense_variant	ADAM10|p.L81R|1|0.41|ENSG00000137845|chr15:58682279-58682279|A/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	552.6348266601562	2	552.235635	1102.45672	-1.1775	-0.00065025	0.40256	0.00022231	-0.77493	-0.00042795	552.23581072115	37.426	0.6124	38.197	37.867	38.479	0.7709					28	11	4	0	0	0	0.58047	2	13704	13672;13704		15.847	3.6065	1	7960900			7365	41	5198	5246	7169;7170	7170					-0.09041208938037926
DTSRPLGDSMY	11	Unmodified	_DTSRPLGDSMY_					0	0	0		nc|ENSG00000188554|Q14596-2|NBR1;ENSG00000188554|ENST00000590996|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	MULTI-MSMS	A375_MHC_IP_R1	1	621.6768188476562	2	621.276977	1240.5394	-0.34837	-0.00021643	-0.25363	-0.00015758	-0.602	-0.00037401	621.2768992943272	51.158	0.4577	51.158	50.915	51.373	0					16	8	2	0	0	0	0.28279	1	18168	18168		48.073	32.226	1	2734800			7366	8914	5199	5247	7171	7171					-0.07124635201535057
DTSRPLGDSMY	11	Unmodified	_DTSRPLGDSMY_					0	0	0		nc|ENSG00000188554|Q14596-2|NBR1;ENSG00000188554|ENST00000590996|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	MULTI-SECPEP	A375_MHC_IP_R2	2	621.6766357421875	2	621.276977	1240.5394	-0.85966	-0.00053409	-0.25212	-0.00015664	-1.1118	-0.00069072	621.2769592332843	50.576	0.55736	51.33	51.057	51.615	0.75406					22	10	3	0	0	0	0.42835	1	19017	19017		55.249	33.502	1	3290400			7367	8914	5199	5247	7172	7172					-0.07124635201535057
DTSRPLGDSMY	11	Oxidation (M)	_DTSRPLGDSM(Oxidation (M))Y_		DTSRPLGDSM(1)Y		DTSRPLGDSM(86)Y	0	0	1		nc|ENSG00000188554|Q14596-2|NBR1;ENSG00000188554|ENST00000590996|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	MULTI-SECPEP	A375_MHC_IP_R1	1	629.673583984375	2	629.274435	1256.53432	-0.49422	-0.000311	-0.13502	-8.4964E-05	-0.62924	-0.00039597	629.2744157147737	35.919	0.50858	35.919	35.727	36.236	0					22	9	3	0	0	0	0.041103	1	11976	11976		85.764	67.618	1	5868000			7368	8914	5199	5248	7173	7173		412			-0.08368939064143888
DTSRPLGDSMY	11	Oxidation (M)	_DTSRPLGDSM(Oxidation (M))Y_		DTSRPLGDSM(1)Y		DTSRPLGDSM(69)Y	0	0	1		nc|ENSG00000188554|Q14596-2|NBR1;ENSG00000188554|ENST00000590996|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	MULTI-MSMS	A375_MHC_IP_R2	2	629.6739501953125	2	629.274435	1256.53432	-1.056	-0.00066453	0.14259	8.9728E-05	-0.91344	-0.0005748	629.2746270595449	35.316	0.50531	36.08	35.878	36.384	0.76338					22	9	3	0	0	0	0.10656	1	12795	12795		68.76	50.387	1	7138700			7369	8914	5199	5248	7174	7174		412			-0.08368939064143888
DTSSCTVWG	9	Unmodified	_DTSSCTVWG_					0	0	0			REV__nc|ENSG00000133121|Q9Y3M8-4|STARD13	REV__nc|ENSG00000133121|Q9Y3M8-4|STARD13	MSMS	A375_MHC_IP_R1	1	478.1852111816406	2	478.194925	954.375297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.141	1	40.141	39.641	40.641	0								0	0	0	0.15486	1	13773	13773		8.5933	2.8329	1		+		7370	18709	5200	5249	7175	7175					-0.10371607901629432
DTSSLFESGE	10	Unmodified	_DTSSLFESGE_					0	0	0			REV__WDR25|p.R386W|2|0.37|ENSG00000176473|chr14:100525924-100525924|C/T|missense_variant	REV__WDR25|p.R386W|2|0.37|ENSG00000176473|chr14:100525924-100525924|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	535.6260986328125	2	536.227476	1070.4404	-0.87851	-0.00047108	-0.029291	-1.5707E-05	-0.9078	-0.00048679	536.227395763981	30.495	0.45296	31.214	31.064	31.517	0.71857					18	8	3	0	0	0	0.91556	1	10715	10715		14.838	4.7643	1	3041900	+		7371	21408	5201	5250	7176	7176					-0.09200334894785556
DTSSTAFPDTS	11	Unmodified	_DTSSTAFPDTS_					0	0	0			REV__nc|ENSG00000085832|P42566-2|EPS15	REV__nc|ENSG00000085832|P42566-2|EPS15	MULTI-SECPEP	A375_MHC_IP_R2	2	564.1796264648438	2	564.738208	1127.46186	-0.91	-0.00051391	1.1897	0.00067188	0.27973	0.00015797	564.7388615936183	28.426	0.35524	29.104	28.858	29.214	0.67857					10	6	2	0	0	0	0.95991	1	9790	9790		13.042	0	1	6567200	+		7372	16844	5202	5251	7177	7177					-0.09676949866070572
DTSTVSIVLL	10	Unmodified	_DTSTVSIVLL_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4;FAT4|p.D2251N|1|0.21|ENSG00000196159|chr4:125415714-125415714|G/A|missense_variant	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	A375_MHC_IP_R2	2	524.1244506835938	2	524.300247	1046.58594	-0.88038	-0.00046158	1.3444	0.00070489	0.46406	0.0002433	524.3009967690372	37.46	0.25758	38.231	38.12	38.378	0.7709					7	4	2	0	0	0	0.85226	1	13669	13669		14.838	0	1	1987900			7373	9009	5203	5252	7178	7178					0.06451172692050022
DTSTVSIVLL	10	Unmodified	_DTSTVSIVLL_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4;FAT4|p.D2251N|1|0.21|ENSG00000196159|chr4:125415714-125415714|G/A|missense_variant	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MATCH	A375_MHC_IP_R1	1		2	524.300247	1046.58594	-0.6889	-0.00036119	1.8206	0.00095452	1.1317	0.00059333	524.3013199065498	38.449	0.30896	38.449	38.268	38.577	0	0.10926	0.00024126	NaN	14.838	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2753600			7374	9009	5203	5252							0.06451172692050022
DTSTYQYDES	10	Unmodified	_DTSTYQYDES_					0	0	0		ENSG00000003756|ENST00000347869|RBM5;RBM5|p.R574Efs*14|1|0.15|ENSG00000003756|chr3:50114049-50114050|-/G|frameshift_variant;ENST00000489437.1_1_3:50144918-50148299:+|nuORF	ENSG00000003756|ENST00000347869|RBM5	ENSG00000003756|ENST00000347869|RBM5	MULTI-MSMS	A375_MHC_IP_R2	2	403.89178466796875	3	403.491174	1207.45169	-0.35323	-0.00014252	-0.45353	-0.000183	-0.80676	-0.00032552	403.4918651032022	58.887	0.55946	59.634	59.387	59.946	0.74714					21	10	3	0	0	0	0.71946	1	22309	22309		3.5871	0	1	2379200			7375	861	5204	5253	7179	7179					-0.14373557591306962
DTSTYQYDES	10	Unmodified	_DTSTYQYDES_					0	0	0		ENSG00000003756|ENST00000347869|RBM5;RBM5|p.R574Efs*14|1|0.15|ENSG00000003756|chr3:50114049-50114050|-/G|frameshift_variant;ENST00000489437.1_1_3:50144918-50148299:+|nuORF	ENSG00000003756|ENST00000347869|RBM5	ENSG00000003756|ENST00000347869|RBM5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	403.491174	1207.45169	-0.4194	-0.00016922	0.14029	5.6605E-05	-0.27911	-0.00011262	403.4921010842967	59.445	0.55799	59.445	59.194	59.752	0	-0.094585	0.00026066	NaN	3.5871	28	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1875000			7376	861	5204	5253							-0.14373557591306962
DTSVSSVDGPV	11	Unmodified	_DTSVSSVDGPV_					0	0	0		nc|ENSG00000119231|Q96HI0-2|SENP5;ENSG00000119231|ENST00000323460|SENP5	nc|ENSG00000119231|Q96HI0-2|SENP5	nc|ENSG00000119231|Q96HI0-2|SENP5	MULTI-SECPEP	A375_MHC_IP_R2	2	531.6577758789062	2	531.751118	1061.48768	-0.69424	-0.00036916	0.43356	0.00023054	-0.26068	-0.00013862	531.7512536169781	31.419	0.30632	32.138	32.026	32.332	0.71857					7	5	2	0	0	0	0.90584	1	11187	11187		8.1555	0	1	902290			7377	3577	5205	5254	7180	7180					-0.04060055623790504
DTSYKGVLEA	10	Unmodified	_DTSYKGVLEA_					0	0	0		ENST00000393644.3_1_3:196255445-196255661:-|nuORF	ENST00000393644.3_1_3:196255445-196255661:-|nuORF	ENST00000393644.3_1_3:196255445-196255661:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	541.16943359375	2	541.771854	1081.52915	-0.87172	-0.00047228	0.74957	0.0004061	-0.12215	-6.6178E-05	542.2735270726897	38.448	0.96735	38.448	38.016	38.983	0					37	18	4	0	0	0	0.60238	1	12971	12971		39.95	21.803	1	7183800			7378	11441	5206	5255	7181	7181					-0.008348748644721127
DTTGTSWNQS	10	Unmodified	_DTTGTSWNQS_					0	0	0			REV__nc|ENSG00000135823|O43752-2|STX6	REV__nc|ENSG00000135823|O43752-2|STX6	MULTI-MSMS	A375_MHC_IP_R1	1	548.673828125	2	548.730717	1095.44688	-0.61598	-0.00033801	0.8758	0.00048058	0.25983	0.00014258	548.7312431593558	58.619	0.50791	58.619	58.328	58.836	0					21	9	3	0	0	0	0.59108	1	21061	21061		21.537	5.6898	1	1920800	+		7379	18886	5207	5256	7182	7182					-0.09702396943430358
DTTGTSWNQS	10	Unmodified	_DTTGTSWNQS_					0	0	0			REV__nc|ENSG00000135823|O43752-2|STX6	REV__nc|ENSG00000135823|O43752-2|STX6	MULTI-SECPEP	A375_MHC_IP_R1	1	548.673828125	2	548.730717	1095.44688	-0.61598	-0.00033801	0.8758	0.00048058	0.25983	0.00014258	548.7312431593558	58.619	0.50791	58.619	58.328	58.836	0					21	9	3	0	0	0	0.8528	1	21061	21061		21.537	21.537	1	1920800	+		7380	18886	5207	5256	7183	7183					-0.09702396943430358
DTTIIKKDYSE	11	Unmodified	_DTTIIKKDYSE_					0	0	0			REV__ENSG00000099139|ENST00000674117|PCSK5	REV__ENSG00000099139|ENST00000674117|PCSK5	MULTI-MSMS	A375_MHC_IP_R2	2	438.6255798339844	3	438.22588	1311.65581	-0.62539	-0.00027406	0.035437	1.5529E-05	-0.58996	-0.00025853	438.2258492673822	57.544	0.50855	58.293	58.019	58.528	0.74894					28	9	4	0	0	0	0.65093	1	21764	21764		15.538	4.4732	1	5593800	+		7381	17011	5208	5257	7184	7184					0.012450065700022606
DTTIIKKDYSE	11	Unmodified	_DTTIIKKDYSE_					0	0	0			REV__ENSG00000099139|ENST00000674117|PCSK5	REV__ENSG00000099139|ENST00000674117|PCSK5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	438.22588	1311.65581	-0.18453	-8.0866E-05	0.35462	0.0001554	0.17009	7.4536E-05	438.22593227235797	58.389	0.60973	58.389	58.024	58.633	0	0.048328	0.00023926	NaN	15.538	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4876300	+		7382	17011	5208	5257							0.012450065700022606
DTTIIKKDYSE	11	Unmodified	_DTTIIKKDYSE_					0	0	0			REV__ENSG00000099139|ENST00000674117|PCSK5	REV__ENSG00000099139|ENST00000674117|PCSK5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	438.22588	1311.65581	-0.62539	-0.00027406	0.035437	1.5529E-05	-0.58996	-0.00025853	438.2258492673822	57.544	0.50855	58.293	58.019	58.528	0.74894	-0.048328	-0.00018036	NaN	15.538	28	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5593800	+		7383	17011	5208	5257							0.012450065700022606
DTTKKKKKK	9	Unmodified	_DTTKKKKKK_					0	0	0		ENSG00000130826|ENST00000369550|DKC1;chrX:154776324-154776804|165|10.49|0.53|4.31|+|1|DKC1,DKC1|1	ENSG00000130826|ENST00000369550|DKC1	ENSG00000130826|ENST00000369550|DKC1	MSMS	A375_MHC_IP_R2	2	368.9436950683594	3	368.908157	1103.70264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.594	1	24.224	23.724	24.724	0.63014								0	0	0	0.15486	1	7622	7622		1.0715	0	1				7384	4287	5209	5258	7185	7185					0.1549395570245906
DTTLRRGGTVY	11	Unmodified	_DTTLRRGGTVY_					0	0	0			REV__ENSG00000175946|ENST00000684634|KLHL38	REV__ENSG00000175946|ENST00000684634|KLHL38	MULTI-MSMS	A375_MHC_IP_R1	1	413.9521179199219	3	413.554443	1237.6415	0.091866	3.7992E-05	-1.2335	-0.00051014	-1.1417	-0.00047215	413.55414360424925	19.356	0.23279	19.356	19.238	19.471	0					6	4	2	0	0	0	0.64288	1	4692	4692		19.987	8.469	1	1215500	+		7385	21377	5210	5259	7186	7186					0.03218398932381206
DTVFDNTDFE	10	Unmodified	_DTVFDNTDFE_					0	0	0		ENSG00000122012|ENST00000502798|SV2C	ENSG00000122012|ENST00000502798|SV2C	ENSG00000122012|ENST00000502798|SV2C	MSMS	A375_MHC_IP_R2	2	601.6917114257812	2	601.746033	1201.47751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.922	1	20.533	20.033	21.033	0.61029								0	0	0	0.15265	1	6159	6159		12.241	1.4167	1				7386	3756	5211	5260	7187	7187					-0.11516663349061673
DTVGIWGEV	9	Unmodified	_DTVGIWGEV_					0	0	0		ENST00000504484.5_1_4:40895269-40936713:-|nuORF	ENST00000504484.5_1_4:40895269-40936713:-|nuORF	ENST00000504484.5_1_4:40895269-40936713:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	488.6891174316406	2	488.242732	974.470912	-0.55408	-0.00027052	0.014627	7.1413E-06	-0.53945	-0.00026338	488.2426995247353	70.553	0.50577	71.287	70.997	71.503	0.73421					17	9	2	0	0	0	0.2264	1	26828	26828		36.044	7.5574	1	3530700			7387	12820	5212	5261	7188	7188					-0.01734511719087095
DTVKDLVSRF	10	Unmodified	_DTVKDLVSRF_					0	0	0		ENSG00000164776|ENST00000297373|PHKG1;nc|ENSG00000164776|Q16816-2|PHKG1	ENSG00000164776|ENST00000297373|PHKG1	ENSG00000164776|ENST00000297373|PHKG1	MULTI-SECPEP	A375_MHC_IP_R2	2	394.27178955078125	3	393.883789	1178.62954	-0.095018	-3.7426E-05	1.4089	0.00055493	1.3139	0.00051751	393.8844493170291	27.361	0.35639	28.04	27.843	28.2	0.67857					10	6	2	0	0	0	0.92199	1	9295	9295		14.957	9.1737	1	2118400			7388	6880	5213	5262	7189	7189					0.04736782189183941
DTVKSQLCAR	10	Unmodified	_DTVKSQLCAR_					0	0	0		ENST00000452211.5_2_3:48341958-48342785:-|nuORF;ENST00000456495.5_3_3:48341958-48342842:-|nuORF	ENST00000452211.5_2_3:48341958-48342785:-|nuORF	ENST00000452211.5_2_3:48341958-48342785:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	561.0050659179688	2	560.792598	1119.57064	-0.95941	-0.00053803	2.4656	0.0013827	1.5062	0.00084467	560.794437093796	60.144	0.55888	60.891	60.603	61.162	0.74714					14	10	2	0	0	0	0.77204	1	22695	22695		16.149	11.252	1	897380			7389	12081	5214	5263	7190	7190					0.015639826232018095
DTVLMHSSLIK	11	Unmodified	_DTVLMHSSLIK_					0	0	0			REV__ENST00000486017.5_1_2:101541677-101580523:+|nuORF	REV__ENST00000486017.5_1_2:101541677-101580523:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	416.2679748535156	3	415.228679	1242.66421	0.85675	0.00035575	0.62941	0.00026135	1.4862	0.0006171	415.56265811544614	44.921	0.86142	44.921	44.523	45.384	0					41	16	4	0	0	0	0.73016	1	15732	15732		8.7518	0.46535	1	12003000	+		7390	20998	5215	5264	7191	7191					0.05258282005638648
DTVMYPSVY	9	Unmodified	_DTVMYPSVY_					0	0	0			REV__tr|U7SSC0|U7SSC0_FUSNUChaperoninGroELOS=FusobacteriumnucleatumCTI-5OX=1316586GN=groELPE=3SV=1	REV__tr|U7SSC0|U7SSC0_FUSNUChaperoninGroELOS=FusobacteriumnucleatumCTI-5OX=1316586GN=groELPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1866455078125	2	537.74425	1073.47395	-0.17402	-9.3578E-05	3.8945	0.0020942	3.7205	0.0020007	537.7471864738765	44.784	0.6104	44.784	44.318	44.928	0					15	11	2	0	0	0	0.69504	1	15588	15588		7.9102	3.9658	1	990320	+		7391	28422	5216	5265	7192	7192					-0.059850046565770754
DTVMYYGFY	9	Unmodified	_DTVMYYGFY_					0	0	0		ENST00000567478.5_1_16:19467998-19503571:+|nuORF;nc|ENSG00000103534|Q6UXY8-3|TMC5;nc|ENSG00000103534|Q6UXY8-4|TMC5;ENSG00000103534|ENST00000542583|TMC5;nc|ENSG00000103534|Q6UXY8-2|TMC5;TMC5|p.R499K|1|0.2|ENSG00000103534|chr16:19466092-19466092|G/A|missense_variant	ENST00000567478.5_1_16:19467998-19503571:+|nuORF	ENST00000567478.5_1_16:19467998-19503571:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	579.6590576171875	2	579.74425	1157.47395	-0.29091	-0.00016865	-0.80187	-0.00046488	-1.0928	-0.00063354	579.7436532800177	64.957	0.81245	65.695	65.206	66.018	0.73811					23	15	3	0	0	0	0.63811	2	24726	24711;24726		12.532	2.4576	1	2782200			7392	13571	5217	5266	7193;7194	7194					-0.09849004656575744
DTVPRAFLKKI	11	Unmodified	_DTVPRAFLKKI_					0	0	0		GALNT15|p.E225K|1|0.44|ENSG00000131386|chr3:16195893-16195893|G/A|missense_variant	GALNT15|p.E225K|1|0.44|ENSG00000131386|chr3:16195893-16195893|G/A|missense_variant	GALNT15|p.E225K|1|0.44|ENSG00000131386|chr3:16195893-16195893|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	430.3307800292969	3	429.930962	1286.77106	-0.042961	-1.847E-05	0.031317	1.3464E-05	-0.011644	-5.0063E-06	429.93084123786645	35.227	0.50846	35.227	34.861	35.369	0					14	9	2	0	0	0	0.73318	1	11682	11682		5.8681	0.34485	1	2332600			7393	14034	5218	5267	7195	7195					0.1391420028230641
DTVSDNDTGAL	11	Unmodified	_DTVSDNDTGAL_					0	0	0		nc|ENSG00000149742|Q8IVM8-2|SLC22A9;ENSG00000149742|ENST00000279178|SLC22A9	nc|ENSG00000149742|Q8IVM8-2|SLC22A9	nc|ENSG00000149742|Q8IVM8-2|SLC22A9	MSMS	A375_MHC_IP_R1	1	554.171875	2	554.243657	1106.47276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.617	1	79.617	79.117	80.117	0								0	0	0	0.16203	1	29063	29063		8.1555	0.24537	1				7394	5826	5219	5268	7196	7196					-0.07621547491794445
DTVWYNGNKD	10	Unmodified	_DTVWYNGNKD_					0	0	0			REV__PAM|p.D589N|1|0.1|ENSG00000145730|chr5:103005188-103005188|G/A|missense_variant	REV__PAM|p.D589N|1|0.1|ENSG00000145730|chr5:103005188-103005188|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	606.66943359375	2	606.27001	1210.52547	-0.25236	-0.000153	0.33079	0.00020055	0.078432	4.7551E-05	606.270130999272	53.697	0.76344	53.697	53.199	53.962	0					20	14	2	0	0	0	0.70012	1	19162	19162		12.241	4.6317	1	3801100	+		7395	27711	5220	5269	7197	7197					-0.07137544638339932
DTVWYNGNKD	10	Unmodified	_DTVWYNGNKD_					0	0	0			REV__PAM|p.D589N|1|0.1|ENSG00000145730|chr5:103005188-103005188|G/A|missense_variant	REV__PAM|p.D589N|1|0.1|ENSG00000145730|chr5:103005188-103005188|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	606.6691284179688	2	606.27001	1210.52547	-0.9807	-0.00059457	0.37582	0.00022785	-0.60488	-0.00036672	606.2698940322889	53.168	0.91451	53.919	53.335	54.249	0.75105					29	17	2	0	0	0	0.69833	1	20073	20073		13.042	13.042	1	3095500	+		7396	27711	5220	5269	7198	7198					-0.07137544638339932
DTVWYNGNKD	10	Unmodified	_DTVWYNGNKD_					0	0	0			REV__PAM|p.D589N|1|0.1|ENSG00000145730|chr5:103005188-103005188|G/A|missense_variant	REV__PAM|p.D589N|1|0.1|ENSG00000145730|chr5:103005188-103005188|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	606.27001	1210.52547	-0.25236	-0.000153	0.33079	0.00020055	0.078432	4.7551E-05	606.270130999272	53.697	0.76344	53.697	53.199	53.962	0	-0.11063	-2.094E-05	NaN	13.042	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3801100	+		7397	27711	5220	5269							-0.07137544638339932
DTWARKVLVD	10	Unmodified	_DTWARKVLVD_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	A375_MHC_IP_R2	2	401.9558410644531	3	401.555784	1201.64552	-0.31481	-0.00012641	0.26263	0.00010546	-0.052176	-2.0952E-05	401.88999590800495	19.638	0.65808	20.248	19.942	20.6	0.61029					16	12	2	0	0	0	0.70174	1	6073	6073		11.518	1.3673	1	962810			7398	4476	5221	5270	7199	7199					0.05276488426079595
DTWDKEQL	8	Unmodified	_DTWDKEQL_					0	0	0			REV__ENSG00000162384|ENST00000294360|CZIB	REV__ENSG00000162384|ENST00000294360|CZIB	MSMS	A375_MHC_IP_R2	2	517.687255859375	2	517.743096	1033.47164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.222	1	49.98	49.48	50.48	0.75737								0	0	0	0.16876	1	18493	18493		12.532	0.29089	1		+		7399	20246	5222	5271	7200	7200					-0.04375717070047358
DTWEWNDV	8	Unmodified	_DTWEWNDV_					0	0	0		ENSG00000133048|ENST00000255409|CHI3L1	ENSG00000133048|ENST00000255409|CHI3L1	ENSG00000133048|ENST00000255409|CHI3L1	MSMS	A375_MHC_IP_R1	1	532.7017822265625	2	532.719621	1063.42469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.257	1	67.257	66.757	67.757	0								0	0	0	0.16876	1	24370	24370		4.3292	0.38484	1				7400	4477	5223	5272	7201	7201					-0.10448576621206485
DTWREWGYV	9	Unmodified	_DTWREWGYV_					0	0	0			REV__CHD7|p.G1619E|1|0.38|ENSG00000171316|chr8:60844869-60844869|G/A|missense_variant	REV__CHD7|p.G1619E|1|0.38|ENSG00000171316|chr8:60844869-60844869|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	405.2805480957031	3	404.520851	1210.54072	-0.4833	-0.0001955	0.67106	0.00027146	0.18776	7.5954E-05	404.5210469831372	60.922	0.66193	60.922	60.669	61.331	0					33	12	3	0	0	0	0.77948	1	21982	21982		6.6304	6.6304	1	3711200	+		7401	15659	5224	5273	7202	7202					-0.05612633050486693
DTWYQRYWIY	10	Unmodified	_DTWYQRYWIY_					0	0	0			REV__nc|ENSG00000166736|P46098-3|HTR3A	REV__nc|ENSG00000166736|P46098-3|HTR3A	MSMS	A375_MHC_IP_R1	1	498.4674072265625	3	498.56646	1492.67755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.524	1	75.524	75.024	76.024	0								0	0	0	0.1552	1	27516	27516		1.9064	0	1		+		7402	20698	5225	5274	7203	7203					-0.049081438907478514
DTYCIESF	8	Unmodified	_DTYCIESF_					0	0	0		ENST00000512327.1_1_3:141105442-141105529:+|nuORF	ENST00000512327.1_1_3:141105442-141105529:+|nuORF	ENST00000512327.1_1_3:141105442-141105529:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	489.66851806640625	2	489.199676	976.384799	-0.092461	-4.5232E-05	-2.1698	-0.0010614	-2.2622	-0.0011067	489.1990436751222	92.371	0.55836	92.371	92.059	92.617	0					18	10	2	0	0	0	0.77515	1	33879	33879		12.532	0.89125	1	1064500			7403	12918	5226	5275	7204	7204					-0.10433839616109708
DTYCIESF	8	Unmodified	_DTYCIESF_					0	0	0		ENST00000512327.1_1_3:141105442-141105529:+|nuORF	ENST00000512327.1_1_3:141105442-141105529:+|nuORF	ENST00000512327.1_1_3:141105442-141105529:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	489.0995178222656	2	489.199676	976.384799	-0.47193	-0.00023087	-1.4573	-0.00071291	-1.9292	-0.00094378	489.1991457081742	91.564	0.55807	92.299	92.122	92.68	0.7345					16	10	2	0	0	0	0.68907	1	34896	34896		38.151	6.0342	1	1912200			7404	12918	5226	5275	7205	7205					-0.10433839616109708
DTYILHVP	8	Unmodified	_DTYILHVP_					0	0	0			REV__ENST00000358022.4_1_9:25677009-25677096:-|nuORF	REV__ENST00000358022.4_1_9:25677009-25677096:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	479.6554260253906	2	479.255643	956.496732	-0.43669	-0.00020928	0.17971	8.6128E-05	-0.25697	-0.00012316	479.25576166255183	75.128	0.55603	75.128	74.908	75.464	0					16	10	2	0	0	0	0.74204	1	27386	27386		22.453	13.859	1	929720	+		7405	23852	5227	5276	7206	7206					0.016743825231856135
DTYILHVP	8	Unmodified	_DTYILHVP_					0	0	0			REV__ENST00000358022.4_1_9:25677009-25677096:-|nuORF	REV__ENST00000358022.4_1_9:25677009-25677096:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	478.6940612792969	2	479.255643	956.496732	-0.43669	-0.00020928	0.17971	8.6128E-05	-0.25697	-0.00012316	479.25576166255183	75.128	0.55603	75.128	74.908	75.464	0					16	10	2	0	0	0	0.87193	1	27405	27405		10.183	1.5901	1	929720	+		7406	23852	5227	5276	7207	7207					0.016743825231856135
DTYILHVP	8	Unmodified	_DTYILHVP_					0	0	0			REV__ENST00000358022.4_1_9:25677009-25677096:-|nuORF	REV__ENST00000358022.4_1_9:25677009-25677096:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	479.65576171875	2	479.255643	956.496732	-0.57998	-0.00027796	0.47214	0.00022628	-0.10784	-5.1682E-05	479.2557556125041	74.335	0.60863	75.073	74.757	75.365	0.73752					15	11	2	0	0	0	0.57865	1	28235	28235		45.75	13.633	1	1431000	+		7407	23852	5227	5276	7208	7208					0.016743825231856135
DTYLPVFQN	9	Unmodified	_DTYLPVFQN_					0	0	0			REV__nc|ENSG00000075340|P35612-2|ADD2	REV__nc|ENSG00000075340|P35612-2|ADD2	MSMS	A375_MHC_IP_R1	1	548.69677734375	2	548.769114	1095.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.098	1	34.098	33.598	34.598	0								0	0	0	0.15411	1	11204	11204		14.838	0.93222	1		+		7408	27115	5228	5277	7209	7209					-0.02026553656287433
DTYPPKSR	8	Unmodified	_DTYPPKSR_					0	0	0			REV__ENSG00000112144|ENST00000676107|CILK1	REV__ENSG00000112144|ENST00000676107|CILK1	MULTI-SECPEP	A375_MHC_IP_R2	2	482.9538879394531	2	482.248349	962.482145	-0.36779	-0.00017736	-0.6343	-0.00030589	-1.0021	-0.00048325	482.2481147759355	43.815	0.30244	44.584	44.43	44.732	0.7691					8	5	2	0	0	0	0.97144	1	16342	16342		9.3474	0	1	942500	+		7409	17710	5229	5278	7210	7210					-0.0005968962494762309
DTYPVTRI	8	Unmodified	_DTYPVTRI_					0	0	0			REV__ENSG00000107959|ENST00000224949|PITRM1	REV__ENSG00000107959|ENST00000224949|PITRM1	MSMS	A375_MHC_IP_R2	2	482.6683349609375	2	482.758549	963.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.285	1	45.055	44.555	45.555	0.7691								0	0	0	0.16876	1	16526	16526		18.135	0	1		+		7410	17509	5230	5279	7211	7211					0.01933481034848228
DTYTLSYKVE	10	Unmodified	_DTYTLSYKVE_					0	0	0			REV__nc|ENSG00000204852|Q2MV58-5|TCTN1	REV__nc|ENSG00000204852|Q2MV58-5|TCTN1	MULTI-SECPEP	A375_MHC_IP_R2	2	609.2264404296875	2	609.798069	1217.58158	-0.46668	-0.00028458	-0.3705	-0.00022593	-0.83718	-0.00051051	609.7982111707391	73.014	0.91508	73.749	73.379	74.294	0.73541					23	17	2	0	0	0	0.91442	1	27677	27677		11.495	4.7715	1	1264600	+		7411	22545	5231	5280	7212	7212					-0.018503365215337908
DTYTYWGRWRR	11	Unmodified	_DTYTYWGRWRR_					0	0	0			REV__CNPPD1|p.G197R|1|0.35|ENSG00000115649|chr2:219173451-219173451|C/T|missense_variant	REV__CNPPD1|p.G197R|1|0.35|ENSG00000115649|chr2:219173451-219173451|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	520.645263671875	3	520.588258	1558.74294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.687	1	63.687	63.187	64.187	0								0	0	0	0.16334	1	23028	23028		1.3296	0.87513	1		+		7412	15811	5232	5281	7213	7213					-0.014077296450977883
DTYTYWGRWRR	11	Unmodified	_DTYTYWGRWRR_					0	0	0			REV__CNPPD1|p.G197R|1|0.35|ENSG00000115649|chr2:219173451-219173451|C/T|missense_variant	REV__CNPPD1|p.G197R|1|0.35|ENSG00000115649|chr2:219173451-219173451|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	520.6582641601562	3	520.588258	1558.74294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.203	1	72.203	71.703	72.703	0								0	0	0	0.16334	1	26261	26261		0.45452	0.046251	1		+		7413	15811	5232	5281	7214	7214					-0.014077296450977883
DTYTYWGRWRR	11	Unmodified	_DTYTYWGRWRR_					0	0	0			REV__CNPPD1|p.G197R|1|0.35|ENSG00000115649|chr2:219173451-219173451|C/T|missense_variant	REV__CNPPD1|p.G197R|1|0.35|ENSG00000115649|chr2:219173451-219173451|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	520.6578369140625	3	520.588258	1558.74294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.623	1	73.358	72.858	73.858	0.73541								0	0	0	0.16334	1	27561	27561		0.45452	0	1		+		7414	15811	5232	5281	7215	7215					-0.014077296450977883
DTYTYWGRWRR	11	Unmodified	_DTYTYWGRWRR_					0	0	0			REV__CNPPD1|p.G197R|1|0.35|ENSG00000115649|chr2:219173451-219173451|C/T|missense_variant	REV__CNPPD1|p.G197R|1|0.35|ENSG00000115649|chr2:219173451-219173451|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	520.658203125	3	520.588258	1558.74294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.197	1	73.932	73.432	74.432	0.73541								0	0	0	0.16334	1	27784	27784		0.45452	0.046251	1		+		7415	15811	5232	5281	7216	7216					-0.014077296450977883
DVAAQAMDPTY	11	Unmodified	_DVAAQAMDPTY_					0	0	0			REV__MMP27|p.R124Q|1|0.57|ENSG00000137675|chr11:102703089-102703089|C/T|missense_variant	REV__MMP27|p.R124Q|1|0.57|ENSG00000137675|chr11:102703089-102703089|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	591.7420043945312	2	591.260796	1180.50704	0.12409	7.3372E-05	0.47172	0.00027891	0.59581	0.00035228	591.2585744997992	113.37	0.20397	113.37	113.24	113.45	0					5	3	2	0	0	0	0.73016	1	41552	41552		8.7454	2.0222	1	986850	+		7416	27027	5233	5282	7217	7217					-0.07599422604539541
DVARVSGFTL	10	Unmodified	_DVARVSGFTL_					0	0	0			REV__ENST00000559111.1_1_15:99797871-99798159:+|nuORF	REV__ENST00000559111.1_1_15:99797871-99798159:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	532.2006225585938	2	532.790381	1063.56621	-0.65047	-0.00034657	0.3137	0.00016714	-0.33677	-0.00017943	532.7904114238149	81.38	1.4196	81.38	80.948	82.368	0					88	27	6	0	0	0	0.17241	1	29781	29781		62.573	0	1	95977000	+		7417	26147	5234	5283	7218	7218					0.03696841471969492
DVASLGLVPQ	10	Unmodified	_DVASLGLVPQ_					0	0	0		ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	MULTI-SECPEP	A375_MHC_IP_R1	1	500.474853515625	2	499.779482	997.544411	-0.25304	-0.00012647	0.39362	0.00019672	0.14057	7.0256E-05	499.77956591509644	88.706	0.40828	88.706	88.51	88.919	0					11	7	2	0	0	0	0.64716	1	32588	32588		36.127	23.085	1	1874300			7418	5870	5235	5284	7219	7219					0.045540367233684265
DVCGMVCI	8	Unmodified	_DVCGMVCI_					0	0	0		ENST00000412444.5_1_2:213872086-213945912:-|nuORF;ENSG00000030419|ENST00000434687|IKZF2;nc|ENSG00000030419|Q9UKS7-3|IKZF2;nc|ENSG00000030419|Q9UKS7-6|IKZF2;nc|ENSG00000123411|Q9H2S9-2|IKZF4;ENST00000551124.5_1_12:56418779-56429112:+|nuORF;ENSG00000123411|ENST00000547167|IKZF4	ENST00000412444.5_1_2:213872086-213945912:-|nuORF	ENST00000412444.5_1_2:213872086-213945912:-|nuORF	MSMS	A375_MHC_IP_R1	1	420.16302490234375	2	420.176635	838.338717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.67	1	141.67	141.17	142.17	0								0	0	0	0.16876	1	54370	54370		2.8892	0	1				7419	1109	5236	5285	7220	7220					-0.08691899323559937
DVDETYRKPV	10	Unmodified	_DVDETYRKPV_					0	0	0		ENSG00000155858|ENST00000286307|LSM11	ENSG00000155858|ENST00000286307|LSM11	ENSG00000155858|ENST00000286307|LSM11	MULTI-MSMS	A375_MHC_IP_R2	2	408.2751159667969	3	407.875182	1220.60372	-0.43546	-0.00017761	0.1901	7.7539E-05	-0.24535	-0.00010007	407.87520512375846	29.857	0.85925	30.556	30.134	30.993	0.69872					46	16	4	0	0	0	0.6502	1	10379	10379		10.899	2.4547	1	17660000			7420	6161	5237	5286	7221	7221					0.0022388794689049973
DVDGVNNLAY	10	Unmodified	_DVDGVNNLAY_					0	0	0		tr|U7SRH0|U7SRH0_FUSNUDUF2207domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01599PE=4SV=1	tr|U7SRH0|U7SRH0_FUSNUDUF2207domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01599PE=4SV=1	tr|U7SRH0|U7SRH0_FUSNUDUF2207domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01599PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	540.20947265625	2	540.253828	1078.4931	-0.74415	-0.00040203	-0.030572	-1.6517E-05	-0.77472	-0.00041854	540.2539647830968	68.153	1.2683	68.888	68.307	69.575	0.73511					47	24	3	0	0	0	0.70329	1	25690	25690		10.824	0.75	1	10556000			7421	29609	5238	5287	7222	7222					-0.04300332041339061
DVDIRKDLY	9	Unmodified	_DVDIRKDLY_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	MULTI-SECPEP	A375_MHC_IP_R1	1	379.9364318847656	3	379.536389	1135.58734	0.15659	5.9432E-05	0.25279	9.5944E-05	0.40938	0.00015538	379.5364618769178	52.971	0.81093	52.971	52.643	53.453	0					53	15	5	0	0	0	0.25548	1	18827	18827		57.108	20.713	1	49968000			7422	1615;9064	5239	5288	7223	7223					0.024968067808231353
DVDIRKDLY	9	Unmodified	_DVDIRKDLY_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	MULTI-SECPEP	A375_MHC_IP_R2	2	379.9364013671875	3	379.536389	1135.58734	-0.34326	-0.00013028	0.2861	0.00010858	-0.057161	-2.1695E-05	379.53647067239666	52.305	0.96102	53.057	52.729	53.69	0.75225					47	18	4	0	0	0	0.16237	1	19660	19660		55.235	13.888	1	56609000			7423	1615;9064	5239	5288	7224	7224					0.024968067808231353
DVDKTGASYY	10	Unmodified	_DVDKTGASYY_					0	0	0		nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	MULTI-MSMS	A375_MHC_IP_R1	1	560.1534423828125	2	559.753661	1117.49277	-0.51662	-0.00028918	-0.30982	-0.00017342	-0.82644	-0.00046261	559.7535172482359	34.119	0.55798	34.119	33.898	34.456	0					26	10	3	0	0	0	0.084058	1	11199	11199		67.081	39.452	1	14716000			7424	5527	5240	5289	7225	7225					-0.06127751761187028
DVDKTGASYY	10	Unmodified	_DVDKTGASYY_					0	0	0		nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	MULTI-MSMS	A375_MHC_IP_R2	2	560.1527099609375	2	559.753661	1117.49277	-1.1305	-0.00063282	-0.069773	-3.9056E-05	-1.2003	-0.00067187	559.7535760483745	33.526	0.60766	34.278	33.992	34.6	0.75225					25	11	3	0	0	0	0.084058	2	12005	12005;12079		67.081	46.627	1	13847000			7425	5527	5240	5289	7226;7227	7226					-0.06127751761187028
DVDQPGANY	9	Unmodified	_DVDQPGANY_					0	0	0		ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	MULTI-SECPEP	A375_MHC_IP_R1	1	490.1118469238281	2	489.711796	977.40904	-0.20241	-9.9123E-05	-0.065063	-3.1862E-05	-0.26747	-0.00013098	489.71176822423877	37.635	0.46037	37.635	37.351	37.812	0					15	8	3	0	0	0	0.33896	1	12696	12696		47.594	25.848	1	3076700			7426	7660	5241	5290	7228	7228					-0.08056863138244807
DVDQPGANY	9	Unmodified	_DVDQPGANY_					0	0	0		ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	MULTI-MSMS	A375_MHC_IP_R2	2	490.1114501953125	2	489.711796	977.40904	-1.1865	-0.00058102	0.90859	0.00044495	-0.27787	-0.00013608	489.7121765753667	37.055	0.60741	37.826	37.564	38.171	0.7709					19	11	3	0	0	0	0.084766	1	13558	13558		53.404	34.147	1	2527700			7427	7660	5241	5290	7229	7229					-0.08056863138244807
DVDRSLFAVE	10	Unmodified	_DVDRSLFAVE_					0	0	0			REV__WNK1|p.A2016V|1|0.31|ENSG00000060237|chr12:896534-896534|C/T|missense_variant	REV__WNK1|p.A2016V|1|0.31|ENSG00000060237|chr12:896534-896534|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	576.1896362304688	2	575.790578	1149.5666	-0.37448	-0.00021562	-0.80692	-0.00046461	-1.1814	-0.00068024	575.790180205969	52.98	0.55634	52.98	52.643	53.199	0					13	10	2	0	0	0	0.39599	1	18884	18884		34.402	1.616	1	4149200	+		7428	28997	5242	5291	7230	7230					-0.002197835988681618
DVDRSLFAVE	10	Unmodified	_DVDRSLFAVE_					0	0	0			REV__WNK1|p.A2016V|1|0.31|ENSG00000060237|chr12:896534-896534|C/T|missense_variant	REV__WNK1|p.A2016V|1|0.31|ENSG00000060237|chr12:896534-896534|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	575.790578	1149.5666	-0.37448	-0.00021562	-0.80692	-0.00046461	-1.1814	-0.00068024	575.790180205969	52.98	0.55634	52.98	52.643	53.199	0	0	0	NaN	34.402	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4149200	+		7429	28997	5242	5291							-0.002197835988681618
DVDTEQLWDYF	11	Unmodified	_DVDTEQLWDYF_					0	0	0			REV__POR|p.I444Sfs*101|1|0.39|ENSG00000127948|chr7:75985133-75985133|C/-|frameshift_variant	REV__POR|p.I444Sfs*101|1|0.39|ENSG00000127948|chr7:75985133-75985133|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	477.88916015625	3	477.541869	1429.60378	-0.8104	-0.000387	0.14828	7.0808E-05	-0.66212	-0.00031619	477.87779434359487	19.016	0.29975	19.619	19.483	19.783	0.60308					8	5	2	0	0	0	0.73795	1	5636	5636		0.45452	0	1	2264800	+		7430	18435	5243	5292	7231	7231					-0.09384156843748315
DVDTEQLWDYF	11	Unmodified	_DVDTEQLWDYF_					0	0	0			REV__POR|p.I444Sfs*101|1|0.39|ENSG00000127948|chr7:75985133-75985133|C/-|frameshift_variant	REV__POR|p.I444Sfs*101|1|0.39|ENSG00000127948|chr7:75985133-75985133|C/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	477.541869	1429.60378	-0.52746	-0.00025188	2.8434	0.0013578	2.3159	0.0011059	477.87812845369837	19.877	0.40707	19.877	19.623	20.03	0	0.12881	0.0011379	NaN	0.45452	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2073600	+		7431	18435	5243	5292							-0.09384156843748315
DVDTEQLWDYF	11	Unmodified	_DVDTEQLWDYF_					0	0	0			REV__POR|p.I444Sfs*101|1|0.39|ENSG00000127948|chr7:75985133-75985133|C/-|frameshift_variant	REV__POR|p.I444Sfs*101|1|0.39|ENSG00000127948|chr7:75985133-75985133|C/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	477.541869	1429.60378	-0.8104	-0.000387	0.14828	7.0808E-05	-0.66212	-0.00031619	477.87779434359487	19.016	0.29975	19.619	19.483	19.783	0.60308	-0.12881	-0.0027231	NaN	0.45452	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2264800	+		7432	18435	5243	5292							-0.09384156843748315
DVDTSQVLY	9	Unmodified	_DVDTSQVLY_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	A375_MHC_IP_R1	1	520.64990234375	2	520.250754	1038.48696	-0.51699	-0.00026897	0.036946	1.9221E-05	-0.48005	-0.00024974	520.2506847827476	77.411	0.91471	77.411	77.032	77.946	0					49	17	4	0	0	0	0.13797	3	28164	28164;28292;28384		43.858	16.975	1	19164000			7433	7257	5244	5293	7232;7233;7234	7232					-0.030748502728329186
DVDTSQVLY	9	Unmodified	_DVDTSQVLY_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-SECPEP	A375_MHC_IP_R2	2	520.6500854492188	2	520.250754	1038.48696	-0.64709	-0.00033665	0.038866	2.022E-05	-0.60822	-0.00031643	520.2507041387781	76.906	0.96384	77.649	77.201	78.165	0.74293					52	18	4	0	0	0	0.064992	1	29121	29121		58.679	22.552	1	14746000			7434	7257	5244	5293	7235	7235					-0.030748502728329186
DVDVLYNGR	9	Unmodified	_DVDVLYNGR_					0	0	0			REV__ENST00000565671.1_1_16:8839919-8854000:+|nuORF	REV__ENST00000565671.1_1_16:8839919-8854000:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	525.70263671875	2	525.764363	1049.51417	-0.84948	-0.00044663	-0.18723	-9.8439E-05	-1.0367	-0.00054507	525.7641077116274	28.307	0.35524	28.985	28.858	29.214	0.67857					9	6	2	0	0	0	0.46038	1	9830	9830		21.747	3.6117	1	3254000	+		7435	21729	5245	5294	7236	7236					-0.008603219418091612
DVEAIFSKY	9	Unmodified	_DVEAIFSKY_					0	0	0		nc|ENSG00000092199|P07910|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000092199|ENST00000553300|HNRNPC;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000277058|ENST00000617807|HNRNPCL3;HNRNPCL1|p.E212Dfs*7|1|0.23|ENSG00000179172|chr1:12847653-12847654|CC/-|frameshift_variant;ENST00000528764.1_1_11:86735664-86735814:+|nuORF	nc|ENSG00000092199|P07910|HNRNPC	nc|ENSG00000092199|P07910|HNRNPC	MULTI-SECPEP	A375_MHC_IP_R1	1	536.7135009765625	2	536.27149	1070.52843	-0.62876	-0.00033719	0.25338	0.00013588	-0.37538	-0.00020131	536.2715752692327	88.361	0.45818	88.361	88.205	88.663	0					12	8	2	0	0	0	0.43207	1	32384	32384		40.239	19.786	1	1471300			7436	1998	5246	5295	7237	7237					-0.0040166951350784075
DVEAIFSKY	9	Unmodified	_DVEAIFSKY_					0	0	0		nc|ENSG00000092199|P07910|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000092199|ENST00000553300|HNRNPC;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000277058|ENST00000617807|HNRNPCL3;HNRNPCL1|p.E212Dfs*7|1|0.23|ENSG00000179172|chr1:12847653-12847654|CC/-|frameshift_variant;ENST00000528764.1_1_11:86735664-86735814:+|nuORF	nc|ENSG00000092199|P07910|HNRNPC	nc|ENSG00000092199|P07910|HNRNPC	MULTI-MSMS	A375_MHC_IP_R2	2	536.5648803710938	2	536.27149	1070.52843	-0.7777	-0.00041706	-0.46649	-0.00025016	-1.2442	-0.00066722	536.2712392905246	87.698	0.60571	88.43	88.066	88.671	0.7318					17	11	2	0	0	0	0.64136	1	33272	33272		12.241	5.5175	1	1665900			7437	1998	5246	5295	7238	7238					-0.0040166951350784075
DVEDLVFFPA	10	Unmodified	_DVEDLVFFPA_					0	0	0			REV__ENSG00000077935|ENST00000357450|SMC1B	REV__ENSG00000077935|ENST00000357450|SMC1B	MSMS	A375_MHC_IP_R1	1	576.2086791992188	2	576.284597	1150.55464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.785	1	30.785	30.285	31.285	0								0	0	0	0.14862	1	9816	9816		20.454	3.5113	1		+		7438	16699	5247	5296	7239	7239					-0.014614003420547306
DVEDLVFFPA	10	Unmodified	_DVEDLVFFPA_					0	0	0			REV__ENSG00000077935|ENST00000357450|SMC1B	REV__ENSG00000077935|ENST00000357450|SMC1B	MSMS	A375_MHC_IP_R2	2	576.2083740234375	2	576.284597	1150.55464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.123	1	30.841	30.341	31.341	0.71857								0	0	0	0.14862	1	10569	10569		20.454	1.1966	1		+		7439	16699	5247	5296	7240	7240					-0.014614003420547306
DVEQNRKKLD	10	Unmodified	_DVEQNRKKLD_					0	0	0			REV__nc|ENSG00000126001|Q9BV73-2|CEP250	REV__nc|ENSG00000126001|Q9BV73-2|CEP250	MSMS	A375_MHC_IP_R1	1	622.6634521484375	2	622.833308	1243.65206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.698	1	93.698	93.198	94.198	0								0	0	0	0.15353	1	34441	34441		9.3831	0.78985	1		+		7440	18376	5248	5297	7241	7241					0.039983815868026795
DVFAEECDSY	10	Unmodified	_DVFAEECDSY_					0	0	0			REV__ZNF121|p.E89K|1|0.37|ENSG00000197961|chr19:9566848-9566848|C/T|missense_variant	REV__ZNF121|p.E89K|1|0.37|ENSG00000197961|chr19:9566848-9566848|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	589.1978149414062	2	589.221336	1176.42812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.851	1	48.851	48.351	49.351	0								0	0	0	0.15308	1	17254	17254		10.824	4.1008	1		+		7441	22332	5249	5298	7242	7242					-0.15303694629506026
DVFFKRRK	8	Unmodified	_DVFFKRRK_					0	0	0			REV__ENST00000510885.2_1_4:57459440-57459704:+|nuORF	REV__ENST00000510885.2_1_4:57459440-57459704:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	365.94561767578125	3	365.885576	1094.6349	0.058428	2.1378E-05	0.5011	0.00018334	0.55952	0.00020472	365.8857235906211	28.062	0.75534	28.062	27.836	28.592	0					30	14	3	0	0	0	0.77651	1	8694	8694		7.609	0.88579	1	10883000	+		7442	25607	5250	5299	7243	7243					0.09136550562334378
DVFLLIDD	8	Unmodified	_DVFLLIDD_					0	0	0		nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;ENSG00000102893|ENST00000323584|PHKB	nc|ENSG00000102893|Q93100-4|PHKB	nc|ENSG00000102893|Q93100-4|PHKB	MULTI-SECPEP	A375_MHC_IP_R2	2	475.6601867675781	2	475.247483	948.480414	-0.6992	-0.00033229	0.48437	0.0002302	-0.21483	-0.0001021	475.24728851500015	51.317	0.25426	52.069	51.864	52.118	0.75225					6	4	2	0	0	0	0.972	1	19246	19246		12.532	0	1	553980			7443	14520	5251	5300	7244	7244					0.004112565664286194
DVGVFHSTPV	10	Unmodified	_DVGVFHSTPV_					0	0	0			REV__nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9	REV__nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9	MULTI-MSMS	A375_MHC_IP_R1	1	530.6959228515625	2	529.269281	1056.52401	-0.53302	-0.00028211	-0.24594	-0.00013017	-0.77896	-0.00041228	529.2691651062594	59.572	1.6779	59.572	58.786	60.464	0					113	32	7	0	0	0	0.55789	1	21500	21500		24.021	5.8742	1	222400000	+		7444	22914	5252	5301	7245	7245					-0.0019913393641672883
DVHSEEVSI	9	Unmodified	_DVHSEEVSI_					0	0	0		ENST00000483187.5_1_9:139685862-139687379:+|nuORF;ENST00000465017.5_1_9:139685822-139687379:+|nuORF	ENST00000483187.5_1_9:139685862-139687379:+|nuORF	ENST00000483187.5_1_9:139685862-139687379:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	507.7030334472656	2	507.740554	1013.46655	-0.5906	-0.00029987	-0.56706	-0.00028792	-1.1577	-0.00058779	507.7403602525323	95.419	0.86607	96.169	95.939	96.805	0.75045					27	16	2	0	0	0	0.63811	1	36286	36286		12.532	0.29089	1	2729900			7445	12234	5253	5302	7246	7246					-0.0396402093266488
DVHSEEVSI	9	Unmodified	_DVHSEEVSI_					0	0	0		ENST00000483187.5_1_9:139685862-139687379:+|nuORF;ENST00000465017.5_1_9:139685822-139687379:+|nuORF	ENST00000483187.5_1_9:139685862-139687379:+|nuORF	ENST00000483187.5_1_9:139685862-139687379:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	507.740554	1013.46655	-0.5906	-0.00029987	-0.56706	-0.00028792	-1.1577	-0.00058779	507.7403602525323	95.419	0.86607	96.169	95.939	96.805	0.75045	-0.071256	1.4535E-05	NaN	12.532	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2729900			7446	12234	5253	5302							-0.0396402093266488
DVINDVRDIF	10	Unmodified	_DVINDVRDIF_					0	0	0		ENSG00000165417|ENST00000553612|GTF2A1	ENSG00000165417|ENST00000553612|GTF2A1	ENSG00000165417|ENST00000553612|GTF2A1	MULTI-SECPEP	A375_MHC_IP_R1	1	602.695068359375	2	603.311677	1204.6088	-0.35107	-0.00021181	-0.48065	-0.00028998	-0.83172	-0.00050179	603.812952448538	74.872	0.86021	74.872	74.604	75.464	0					33	16	4	0	0	0	0.90513	1	27247	27247		17.113	9.5039	1	2751200			7447	6950	5254	5303	7247	7247					0.014681918094993307
DVIVVRRKRLT	11	Unmodified	_DVIVVRRKRLT_					0	0	0			REV__nc|ENSG00000096696|P15924-2|DSP	REV__nc|ENSG00000096696|P15924-2|DSP	MULTI-MSMS	A375_MHC_IP_R2	2	678.4525756835938	2	677.935702	1353.85685	-0.49814	-0.00033771	2.8571	0.0019369	2.359	0.0015992	677.9371469780002	110.56	0.15249	111.3	111.19	111.34	0.73692					4	2	2	0	0	0	0.73378	1	41717	41717		5.2969	1.7004	1	718960	+		7448	17008	5255	5304	7248	7248					0.19407785187854643
DVKDVIEQY	9	Unmodified	_DVKDVIEQY_					0	0	0		ENST00000519589.1_1_8:133141511-133152462:-|nuORF;nc|ENSG00000184156|O43525-2|KCNQ3;ENSG00000184156|ENST00000388996|KCNQ3;KCNQ3|p.E668Sfs*15|1|0.19|ENSG00000184156|chr8:132129879-132129880|-/AGCGA|frameshift_variant;nc|ENSG00000117013|P56696-2|KCNQ4;ENSG00000117013|ENST00000347132|KCNQ4;nc|ENSG00000185760|Q9NR82-5|KCNQ5;nc|ENSG00000185760|Q9NR82-2|KCNQ5;ENSG00000185760|ENST00000370398|KCNQ5;nc|ENSG00000185760|Q9NR82-7|KCNQ5;nc|ENSG00000185760|Q9NR82-3|KCNQ5;nc|ENSG00000185760|Q9NR82-6|KCNQ5	ENST00000519589.1_1_8:133141511-133152462:-|nuORF	ENST00000519589.1_1_8:133141511-133152462:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	554.6951293945312	2	554.779679	1107.5448	-0.56641	-0.00031424	-0.7164	-0.00039744	-1.2828	-0.00071168	555.2803877640509	83.338	0.81204	83.338	83.075	83.887	0					27	15	3	0	0	0	0.064992	1	30498	30498		78.149	0	1	1500600			7449	8554	5256	5305	7249	7249					-0.00466588347421748
DVKEKLRKY	9	Unmodified	_DVKEKLRKY_					0	0	0			REV__ENST00000527306.1_1_8:42752256-42852891:+|nuORF	REV__ENST00000527306.1_1_8:42752256-42852891:+|nuORF	MSMS	A375_MHC_IP_R2	2	393.62744140625	3	393.567912	1177.68191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.367	1	19.97	19.47	20.47	0.60308								0	0	0	0.15331	1	5944	5944		16.149	3.2765	1		+		7450	20832	5257	5306	7250	7250					0.10017365322801197
DVKKINHKY	9	Unmodified	_DVKKINHKY_					0	0	0			REV__ENSG00000197563|ENST00000640252|PIGN	REV__ENSG00000197563|ENST00000640252|PIGN	MULTI-SECPEP	A375_MHC_IP_R1	1	382.89666748046875	3	382.220624	1143.64004	0.096411	3.685E-05	1.1404	0.00043589	1.2368	0.00047274	382.2210730927287	26.979	0.24885	26.979	26.779	27.027	0					7	4	2	0	0	0	0.77003	1	8127	8127		7.609	0	1	1343300	+		7451	22299	5258	5307	7251	7251					0.07396809634292367
DVKKLDVGF	9	Unmodified	_DVKKLDVGF_					0	0	0			REV__ENSG00000198798|ENST00000361644|MAGEB3	REV__ENSG00000198798|ENST00000361644|MAGEB3	MULTI-MSMS	A375_MHC_IP_R1	1	512.5078125	2	510.78985	1019.56515	-0.25741	-0.00013148	0.17051	8.7096E-05	-0.086895	-4.4385E-05	510.7899074696203	126.03	1.2092	126.03	125.8	127.01	0					57	23	5	0	0	0	0.64808	1	48031	48031		11.64	0	1	839970000	+		7452	22423	5259	5308	7252	7252					0.05614627103057046
DVKLMMSTLPK	11	Unmodified	_DVKLMMSTLPK_					0	0	0		nc|ENSG00000101057|P10244-2|MYBL2;ENSG00000101057|ENST00000217026|MYBL2	nc|ENSG00000101057|P10244-2|MYBL2	nc|ENSG00000101057|P10244-2|MYBL2	MULTI-SECPEP	A375_MHC_IP_R2	2	421.96612548828125	3	421.566415	1261.67742	-0.13301	-5.6072E-05	-0.11604	-4.8918E-05	-0.24905	-0.00010499	421.56633322489574	30.669	0.45319	31.388	31.216	31.669	0.71857					16	8	3	0	0	0	0.98892	1	10817	10817		5.1984	0	1	4318900			7453	2248	5260	5309	7253	7253					0.05704396793362321
DVKLTCQSI	9	Unmodified	_DVKLTCQSI_					0	0	0			REV__MDH2|p.P214L|1|0.24|ENSG00000146701|chr7:76064346-76064346|C/T|missense_variant	REV__MDH2|p.P214L|1|0.24|ENSG00000146701|chr7:76064346-76064346|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1690979003906	2	503.765517	1005.51648	-0.66894	-0.00033699	-2.0831	-0.0010494	-2.752	-0.0013864	503.76359780504504	76.62	0.61063	77.36	76.994	77.604	0.74052					24	11	4	0	0	0	0.56537	1	29063	29063		17.113	0	1	1165100	+		7454	26999	5261	5310	7254	7254					0.013943904716484212
DVKQLLYLAY	10	Unmodified	_DVKQLLYLAY_					0	0	0			REV__tr|U7SSP9|U7SSP9_FUSNUPolaraminoacidtransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01444PE=4SV=1	REV__tr|U7SSP9|U7SSP9_FUSNUPolaraminoacidtransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01444PE=4SV=1	MSMS	A375_MHC_IP_R2	2	613.3884887695312	2	613.344989	1224.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.177	1	30.896	30.396	31.396	0.71857								0	0	0	0.15332	1	10590	10590		10.074	2.7847	1		+		7455	28440	5262	5311	7255	7255					0.07207427371417907
DVKRRGDRFYL	11	Unmodified	_DVKRRGDRFYL_					0	0	0			REV__nc|ENSG00000131620|Q5XXA6-3|ANO1	REV__nc|ENSG00000131620|Q5XXA6-3|ANO1	MSMS	A375_MHC_IP_R2	2	712.8031616210938	2	712.891492	1423.76843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.82	1	80.564	80.064	81.064	0.74474								0	0	0	0.16279	1	30299	30299		4.1895	0.90819	1		+		7456	18613	5263	5312	7256	7256					0.0734974487738782
DVKVLCYPD	9	Unmodified	_DVKVLCYPD_					0	0	0			REV__ENST00000548972.5_1_12:113545343-113573291:-|nuORF	REV__ENST00000548972.5_1_12:113545343-113573291:-|nuORF	MSMS	A375_MHC_IP_R1	1	526.182373046875	2	526.260068	1050.50558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.004	1	33.004	32.504	33.504	0								0	0	0	0.15486	1	10721	10721		11.64	0	1		+		7457	26022	5264	5313	7257	7257					-0.01765011902648439
DVLDSIKTKGK	11	Unmodified	_DVLDSIKTKGK_					0	0	0		ENSG00000104267|ENST00000285379|CA2	ENSG00000104267|ENST00000285379|CA2	ENSG00000104267|ENST00000285379|CA2	MULTI-MSMS	A375_MHC_IP_R1	1	602.749755859375	2	602.350803	1202.68705	-0.63773	-0.00038414	0.010169	6.1255E-06	-0.62756	-0.00037801	602.3506560873983	134.45	1.0659	134.45	134.17	135.23	0					23	20	2	0	0	0	0.73378	1	51857	51857		5.2969	0.76802	1	5877100			7458	2493	5265	5314	7258	7258					0.09381624394768551
DVLDSIKTKGK	11	Unmodified	_DVLDSIKTKGK_					0	0	0		ENSG00000104267|ENST00000285379|CA2	ENSG00000104267|ENST00000285379|CA2	ENSG00000104267|ENST00000285379|CA2	MULTI-MSMS	A375_MHC_IP_R2	2	602.7508544921875	2	602.350803	1202.68705	-0.37443	-0.00022554	0.13052	7.862E-05	-0.24391	-0.00014692	602.3506633894184	134.33	0.86673	134.47	134.13	135	0.13901					26	16	2	0	0	0	0.73332	1	52867	52867		5.7319	0.83484	1	6110900			7459	2493	5265	5314	7259	7259					0.09381624394768551
DVLPKQKLI	9	Unmodified	_DVLPKQKLI_					0	0	0		ENSG00000080345|ENST00000444746|RIF1;nc|ENSG00000080345|Q5UIP0-2|RIF1	ENSG00000080345|ENST00000444746|RIF1	ENSG00000080345|ENST00000444746|RIF1	MULTI-SECPEP	A375_MHC_IP_R1	1	527.7362670898438	2	527.336967	1052.65938	-0.87853	-0.00046328	-0.075465	-3.9796E-05	-0.95399	-0.00050308	527.3368562999982	29.657	1.6562	29.657	29.302	30.959	0					82	32	3	0	0	0	0.59614	1	9276	9276		30.637	16.73	1	39854000			7460	1712	5266	5315	7260	7260					0.135157659251945
DVLPKQKLI	9	Unmodified	_DVLPKQKLI_					0	0	0		ENSG00000080345|ENST00000444746|RIF1;nc|ENSG00000080345|Q5UIP0-2|RIF1	ENSG00000080345|ENST00000444746|RIF1	ENSG00000080345|ENST00000444746|RIF1	MULTI-MSMS	A375_MHC_IP_R2	2	528.1792602539062	2	527.336967	1052.65938	-1.2319	-0.00064961	-0.094456	-4.981E-05	-1.3263	-0.00069942	527.3368272417086	28.877	1.6577	29.576	29.132	30.79	0.69872					74	32	3	0	0	0	0.35581	1	9992	9992		26.884	1.4843	1	53232000			7461	1712	5266	5315	7261	7261					0.135157659251945
DVMLENYWN	9	Unmodified	_DVMLENYWN_					0	0	0		nc|ENSG00000170949|Q9HCG1-2|ZNF160;ENSG00000170949|ENST00000683776|ZNF160;ZNF160|p.F481Sfs*44|1|0.2|ENSG00000170949|chr19:53069092-53069092|A/-|frameshift_variant	nc|ENSG00000170949|Q9HCG1-2|ZNF160;ENSG00000170949|ENST00000683776|ZNF160	ENSG00000170949|ENST00000683776|ZNF160	MULTI-MSMS	A375_MHC_IP_R1	1	593.7059326171875	2	592.258056	1182.50156	-0.23822	-0.00014109	0.37997	0.00022504	0.14175	8.3955E-05	592.7577251264777	79.12	0.8175	79.12	78.859	79.676	0					41	15	5	0	0	0	0.6898	1	28911	28911		7.9102	1.187	1	2982400			7462	7562;14766	5267	5316	7262	7262					-0.0823910139633881
DVMTLLSLSHA	11	Unmodified	_DVMTLLSLSHA_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-SECPEP	A375_MHC_IP_R1	1	395.6451721191406	3	396.209396	1185.60636	0.096677	3.8304E-05	-1.0348	-0.00041	-0.93812	-0.00037169	396.2090929843181	44.139	0.61639	44.139	44.01	44.626	0					16	11	3	0	0	0	0.98748	1	15444	15444		4.4062	0	1	1858000			7463	4576	5268	5317	7263	7263					0.02098020080211427
DVNFEFPEFQL	11	Unmodified	_DVNFEFPEFQL_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000426405.1_1_X:73629614-73629932:+|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MULTI-MSMS	A375_MHC_IP_R1	1	693.2238159179688	2	692.824618	1383.63468	-0.90534	-0.00062724	-0.31485	-0.00021814	-1.2202	-0.00084538	693.3261429561894	135.67	0.2543	135.67	135.54	135.79	0					9	4	3	0	0	0	0.73404	1	52311	52311		5.0475	2.7647	1	2778000			7464	7653	5269	5318	7264	7264					-0.041789587388393556
DVNFEFPEFQL	11	Unmodified	_DVNFEFPEFQL_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000426405.1_1_X:73629614-73629932:+|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MULTI-MATCH	A375_MHC_IP_R2	2		2	692.824618	1383.63468	-0.54521	-0.00037773	-0.74944	-0.00051923	-1.2946	-0.00089696	693.3254225245793	135.6	0.30559	135.74	135.61	135.92	0.13901	0.035957	-0.00031188	NaN	5.0475	8	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2835000			7465	7653	5269	5318							-0.041789587388393556
DVNFNQKTY	9	Unmodified	_DVNFNQKTY_					0	0	0			REV__Tigger1_dup5491|chr7:22483914-22485489:+|2.0575126454345183|0.2644366730707643|2.96|467.0|2|1|sense	REV__Tigger1_dup5491|chr7:22483914-22485489:+|2.0575126454345183|0.2644366730707643|2.96|467.0|2|1|sense	MULTI-SECPEP	A375_MHC_IP_R2	2	564.181396484375	2	564.769645	1127.52474	-0.28627	-0.00016168	-0.41708	-0.00023555	-0.70335	-0.00039723	564.7696284159975	47.235	0.35715	47.996	47.766	48.123	0.76128					10	6	2	0	0	0	0.71341	1	17633	17633		18.146	3.3081	1	2069100	+		7466	28109	5270	5319	7265	7265					-0.03392339287370305
DVPVCTLLLL	10	Unmodified	_DVPVCTLLLL_					0	0	0			REV__ENSG00000135577|ENST00000258042|NMBR	REV__ENSG00000135577|ENST00000258042|NMBR	MULTI-SECPEP	A375_MHC_IP_R2	2	542.6133422851562	2	543.317386	1084.62022	-0.82752	-0.00044961	3.1687	0.0017216	2.3412	0.001272	543.3191362552827	82.721	0.40257	83.464	83.246	83.648	0.74294					10	7	2	0	0	0	0.91556	1	31492	31492		14.838	13.186	1	1161400	+		7467	17214	5271	5320	7266	7266					0.08129297579307604
DVQDGFSATFE	11	Unmodified	_DVQDGFSATFE_					0	0	0		PSD2|p.R134Q|1|0.2|ENSG00000146005|chr5:139813338-139813338|G/A|missense_variant	PSD2|p.R134Q|1|0.2|ENSG00000146005|chr5:139813338-139813338|G/A|missense_variant	PSD2|p.R134Q|1|0.2|ENSG00000146005|chr5:139813338-139813338|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	608.6854858398438	2	608.26185	1214.50915	-0.22533	-0.00013706	-0.27429	-0.00016684	-0.49962	-0.0003039	608.2616575433545	28.577	0.30454	28.577	28.44	28.745	0					9	5	2	0	0	0	0.53345	1	8813	8813		28.495	8.08	1	2150400			7468	15241	5272	5321	7267	7267					-0.0895267059509024
DVQVLTAK	8	Unmodified	_DVQVLTAK_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	A375_MHC_IP_R1	1	437.9453125	2	437.255643	872.496732	-0.36963	-0.00016162	-0.46419	-0.00020297	-0.83383	-0.0003646	437.2554662571266	32.78	0.3534	32.78	32.585	32.938	0					9	6	2	0	0	0	0.972	1	10563	10563		13.906	9.5768	1	1234300			7469	7807	5273	5322	7268	7268					0.055383825231729134
DVRAEDQGQY	10	Unmodified	_DVRAEDQGQY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;TTN|p.L14011*|1|0.26|ENSG00000155657|chr2:178618595-178618595|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R2	2	393.95562744140625	3	394.179153	1179.51563	-0.51146	-0.00020161	0.11409	4.4971E-05	-0.39738	-0.00015664	394.51349943660057	22.761	0.2554	23.391	23.265	23.521	0.63014					6	4	2	0	0	0	0.90513	1	7218	7218		7.4771	0	1	480970			7470	6151;14694	5274	5323	7269	7269					-0.06694732643700263
DVRAQNEFK	9	Unmodified	_DVRAQNEFK_					0	0	0		ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	MSMS	A375_MHC_IP_R2	2	369.5745849609375	3	369.524484	1105.55162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.856	1	21.466	20.966	21.966	0.61029								0	0	0	0.15486	1	6525	6525		12.873	1.3779	1				7471	6973	5275	5324	7270	7270					0.0030676932381084043
DVRQRRLYRF	10	Unmodified	_DVRQRRLYRF_					0	0	0			REV__ENSG00000125675|ENST00000620443|GRIA3	REV__ENSG00000125675|ENST00000620443|GRIA3	MULTI-SECPEP	A375_MHC_IP_R2	2	705.2992553710938	2	704.899651	1407.78475	-0.62452	-0.00044023	-0.81834	-0.00057685	-1.4429	-0.0010171	704.8990800787386	90.188	0.61121	90.92	90.597	91.208	0.7318					35	11	4	0	0	0	0.93194	1	34280	34280		5.7319	0	1	12815000	+		7472	18355	5276	5325	7271	7271					0.09716870834108704
DVRRALRHL	9	Unmodified	_DVRRALRHL_					0	0	0		ENSG00000175398|ENST00000309675|OR10P1	ENSG00000175398|ENST00000309675|OR10P1	ENSG00000175398|ENST00000309675|OR10P1	MSMS	A375_MHC_IP_R2	2	379.2962646484375	3	379.231746	1134.67341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.834	1	28.513	28.013	29.013	0.67857								0	0	0	0.15486	1	9558	9558		4.897	0	1				7473	7957	5277	5326	7272	7272					0.11145856196822024
DVRYVSLRDV	10	Unmodified	_DVRYVSLRDV_					0	0	0			REV__ENSG00000179314|ENST00000317744|WSCD1	REV__ENSG00000179314|ENST00000317744|WSCD1	MULTI-MSMS	A375_MHC_IP_R2	2	611.7310180664062	2	611.332944	1220.65134	-0.31576	-0.00019303	-1.1665	-0.00071314	-1.4823	-0.00090617	611.331730521939	145.08	0.23041	145.1	144.98	145.21	0.021408					13	8	2	0	0	0	0.71245	1	56655	56655		6.7232	0.51738	1	567690	+		7474	21555	5278	5327	7273	7273					0.04983586937760265
DVSLTACKV	9	Unmodified	_DVSLTACKV_					0	0	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29912792-29913229:+|nuORF;ENST00000494367.1_1_6:29976031-29977313:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-SECPEP	A375_MHC_IP_R1	1	467.6623229980469	2	468.24696	934.479368	-0.29418	-0.00013775	0.94931	0.00044451	0.65513	0.00030676	468.2472984068146	59.985	0.61005	59.985	59.701	60.312	0					28	11	4	0	0	0	0.24324	1	21652	21652		38.176	9.094	1	2977000			7475	9539	5279	5328	7274	7274					0.00950718925878391
DVSLTACKV	9	Carbamidomethyl (C)	_DVSLTAC(Carbamidomethyl (C))KV_	DVSLTAC(1)KV		DVSLTAC(64)KV		0	1	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29912792-29913229:+|nuORF;ENST00000494367.1_1_6:29976031-29977313:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-SECPEP	A375_MHC_IP_R1	1	497.1571044921875	2	496.757692	991.500831	-0.40431	-0.00020084	-0.15312	-7.6062E-05	-0.55742	-0.0002769	496.75746121090157	46.401	0.45162	46.401	46.094	46.545	0					14	8	2	0	0	0	0.061442	1	16258	16258		63.961	31.175	1	2749000			7476	9539	5279	5329	7275	7275	48				0.004741039545933745
DVSLTACKV	9	Carbamidomethyl (C)	_DVSLTAC(Carbamidomethyl (C))KV_	DVSLTAC(1)KV		DVSLTAC(54)KV		0	1	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29912792-29913229:+|nuORF;ENST00000494367.1_1_6:29976031-29977313:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-SECPEP	A375_MHC_IP_R2	2	497.1572265625	2	496.757692	991.500831	-0.48802	-0.00024243	0.40106	0.00019923	-0.086964	-4.32E-05	496.75747259882456	45.581	0.75735	46.346	46.048	46.805	0.76519					21	14	2	0	0	0	0.14572	1	17053	17053		53.833	17.706	1	2857000			7477	9539	5279	5329	7276	7276	48				0.004741039545933745
DVSLYRITW	9	Unmodified	_DVSLYRITW_					0	0	0		ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	MSMS	A375_MHC_IP_R2	2	576.7442626953125	2	576.806031	1151.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.85	1	96.6	96.1	97.1	0.75045								0	0	0	0.15486	1	36402	36402		10.824	2.0785	1				7478	3030	5280	5330	7277	7277					0.027774145060448063
DVSPDLKFL	9	Unmodified	_DVSPDLKFL_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	A375_MHC_IP_R2	2	517.6814575195312	2	517.281857	1032.54916	-0.69782	-0.00036097	0.14034	7.2595E-05	-0.55748	-0.00028838	517.2819487419068	64.263	2.7476	65.003	64.394	67.142	0.74023					112	53	3	0	0	0	0.44024	1	24239	24239		22.736	1.1993	1	10989000	+		7479	21249	5281	5331	7278	7278					0.03418920866147346
DVSWLNPVE	9	Unmodified	_DVSWLNPVE_					0	0	0			REV__nc|ENSG00000048471|Q8TEQ0-2|SNX29	REV__nc|ENSG00000048471|Q8TEQ0-2|SNX29	MULTI-SECPEP	A375_MHC_IP_R2	2	530.1607666015625	2	529.761289	1057.50803	-0.52371	-0.00027744	-0.078221	-4.1439E-05	-0.60193	-0.00031888	529.7611242539849	42.416	0.76375	43.188	42.86	43.623	0.7724					35	14	4	0	0	0	0.31606	1	15752	15752		39.95	0	1	19936000	+		7480	16371	5282	5332	7279	7279					-0.01842840173321747
DVTEVVEV	8	Unmodified	_DVTEVVEV_					0	0	0		nc|ENSG00000156414|Q8NDG6-2|TDRD9;ENSG00000156414|ENST00000409874|TDRD9	nc|ENSG00000156414|Q8NDG6-2|TDRD9	nc|ENSG00000156414|Q8NDG6-2|TDRD9	MULTI-MSMS	A375_MHC_IP_R1	1	445.671142578125	2	445.22929	888.444028	-0.12469	-5.5515E-05	1.0168	0.0004527	0.8921	0.00039719	445.22972016931334	40.953	0.35115	40.953	40.712	41.063	0					11	6	2	0	0	0	0.77702	1	14040	14040		5.7604	0	1	1840100			7481	6191	5283	5333	7280	7280					-0.004656203302715767
DVVGTVILV	9	Unmodified	_DVVGTVILV_					0	0	0			REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	MSMS	A375_MHC_IP_R1	1	457.6713562011719	2	457.781493	913.548434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.192	1	52.192	51.692	52.692	0								0	0	0	0.15283	1	18551	18551		16.942	3.4344	1		+		7482	18698	5284	5334	7281	7281					0.08820126217096913
DVWSFGVVLW	10	Unmodified	_DVWSFGVVLW_					0	0	0		nc|ENSG00000198400|P04629-4|NTRK1;nc|ENSG00000198400|P04629-3|NTRK1;nc|ENSG00000198400|P04629-2|NTRK1;ENSG00000198400|ENST00000524377|NTRK1;ENST00000530298.5_1_1:156845639-156851431:+|nuORF;ENSG00000027644|ENST00000368195|INSRR;ENSG00000140443|ENST00000650285|IGF1R	nc|ENSG00000198400|P04629-4|NTRK1;ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	MULTI-SECPEP	A375_MHC_IP_R1	1	403.2470703125	3	403.209725	1206.60735	-0.62742	-0.00025298	2.6626	0.0010736	2.0352	0.0008206	403.21103144566996	24.067	0.71016	24.067	23.787	24.498	0					16	13	2	0	0	0	0.76414	1	6777	6777		8.9762	1.4992	1	4973100			7483	5153;9266	5285	5335	7282	7282					0.012306025114412478
DVWSTDVTVAN	11	Unmodified	_DVWSTDVTVAN_					0	0	0		ENSG00000138031|ENST00000679454|ADCY3;nc|ENSG00000138031|O60266-2|ADCY3	ENSG00000138031|ENST00000679454|ADCY3	ENSG00000138031|ENST00000679454|ADCY3	MULTI-SECPEP	A375_MHC_IP_R1	1	403.2470703125	3	402.85942	1205.55643	-0.61591	-0.00024812	0.48113	0.00019383	-0.13477	-5.4295E-05	402.85967529555523	24.136	0.20301	24.136	23.991	24.194	0					5	3	2	0	0	0	0.99332	1	6777	6777		3.134	0	1	1615700			7484	4944	5286	5336	7283	7283					-0.03812391324095188
DVYHEPHRRQY	11	Unmodified	_DVYHEPHRRQY_					0	0	0			REV__ENSG00000148143|ENST00000277225|ZNF462	REV__ENSG00000148143|ENST00000277225|ZNF462	MSMS	A375_MHC_IP_R2	2	500.4750061035156	3	500.576129	1498.70656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.082	1	88.814	88.314	89.314	0.7318								0	0	0	0.16297	1	33515	33515		1.3296	0	1		+		7485	19615	5287	5337	7284	7284					-0.02284606541775247
DVYNNKYENRQ	11	Unmodified	_DVYNNKYENRQ_					0	0	0			REV__tr|U7SV73|U7SV73_FUSNUApea-likeHEPNdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01541PE=4SV=1	REV__tr|U7SV73|U7SV73_FUSNUApea-likeHEPNdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01541PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	480.89886474609375	3	481.560145	1441.65861	-0.83898	-0.00040402	-0.34905	-0.00016809	-1.188	-0.00057211	481.55993935933105	19.005	0.29975	19.608	19.483	19.783	0.60308					7	5	2	0	0	0	1.0014	1	5696	5696		0.094841	0	1	8658700	+		7486	28586	5288	5338	7285	7285					-0.0445572525247826
DWAIGVCREY	10	Unmodified	_DWAIGVCREY_					0	0	0		BTN1A1|p.N378Y|1|0.17|ENSG00000124557|chr6:26508725-26508725|A/T|missense_variant	BTN1A1|p.N378Y|1|0.17|ENSG00000124557|chr6:26508725-26508725|A/T|missense_variant	BTN1A1|p.N378Y|1|0.17|ENSG00000124557|chr6:26508725-26508725|A/T|missense_variant	MSMS	A375_MHC_IP_R1	1	606.6773071289062	2	606.279323	1210.54409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.934	1	60.934	60.434	61.434	0								0	0	0	0.15136	1	21945	21945		15.248	1.7406	1				7487	258	5289	5339	7286	7286					-0.052757062681166644
DWAKVVGV	8	Unmodified	_DWAKVVGV_					0	0	0			REV__ENSG00000074276|ENST00000261944|CDHR2	REV__ENSG00000074276|ENST00000261944|CDHR2	MULTI-MSMS	A375_MHC_IP_R1	1	874.504150390625	1	873.482879	872.475603	-0.23206	-0.0002027	0.63746	0.00055681	0.4054	0.00035411	873.4831483490491	98.11	0.86606	98.11	97.845	98.711	0					26	16	2	0	0	0	0.77686	1	36251	36251		6.3541	0	1	4619700	+		7488	16633	5290	5340	7287	7287					0.03426417214348021
DWAKVVGV	8	Unmodified	_DWAKVVGV_					0	0	0			REV__ENSG00000074276|ENST00000261944|CDHR2	REV__ENSG00000074276|ENST00000261944|CDHR2	MULTI-MATCH	A375_MHC_IP_R2	2		1	873.482879	872.475603	-0.74378	-0.00064968	0.70486	0.00061568	-0.03892	-3.3996E-05	873.4833962420811	97.208	0.7623	97.964	97.67	98.432	0.75586	-0.073156	3.0328E-05	NaN	6.3541	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4454800	+		7489	16633	5290	5340							0.03426417214348021
DWCCHGHDC	9	Unmodified	_DWCCHGHDC_					0	0	0		ENSG00000069764|ENST00000438167|PLA2G10	ENSG00000069764|ENST00000438167|PLA2G10	ENSG00000069764|ENST00000438167|PLA2G10	MSMS	A375_MHC_IP_R2	2	538.1973266601562	2	538.162579	1074.3106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.46	1	143.48	142.98	143.98	0.024414								0	0	0	0.15486	1	56064	56064		0	0	1				7490	1479	5291	5341	7288	7288					-0.22357829250927352
DWCCQTHDCCY	11	Unmodified	_DWCCQTHDCCY_					0	0	0		ENSG00000117215|ENST00000375105|PLA2G2D	ENSG00000117215|ENST00000375105|PLA2G2D	ENSG00000117215|ENST00000375105|PLA2G2D	MSMS	A375_MHC_IP_R1	1	688.730224609375	2	688.711775	1375.409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.9	1	115.9	115.4	116.4	0								0	0	0	0.16353	1	42510	42510		0.35063	0	1				7491	3463	5292	5342	7289	7289					-0.26369013788030315
DWCCQTHDCCY	11	Unmodified	_DWCCQTHDCCY_					0	0	0		ENSG00000117215|ENST00000375105|PLA2G2D	ENSG00000117215|ENST00000375105|PLA2G2D	ENSG00000117215|ENST00000375105|PLA2G2D	MSMS	A375_MHC_IP_R2	2	688.3045043945312	2	688.711775	1375.409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.633	1	88.365	87.865	88.865	0.7318								0	0	0	0.16353	1	33333	33333		0.35063	0	1				7492	3463	5292	5342	7290	7290					-0.26369013788030315
DWDDEDSCEN	10	Unmodified	_DWDDEDSCEN_					0	0	0		SHCBP1L|p.E271D|1|0.19|ENSG00000157060|chr1:182939511-182939511|T/A|missense_variant	SHCBP1L|p.E271D|1|0.19|ENSG00000157060|chr1:182939511-182939511|T/A|missense_variant	SHCBP1L|p.E271D|1|0.19|ENSG00000157060|chr1:182939511-182939511|T/A|missense_variant	MSMS	A375_MHC_IP_R1	1	614.2006225585938	2	614.190765	1226.36698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.018	1	80.018	79.518	80.518	0								0	0	0	0.15591	1	29211	29211		1.6526	1.302	1				7493	29155	5293	5343	7291	7291					-0.23715251399562476
DWDFASQY	8	Unmodified	_DWDFASQY_					0	0	0			REV__ENST00000553208.5_1_12:58087944-58109621:+|nuORF	REV__ENST00000553208.5_1_12:58087944-58109621:+|nuORF	MSMS	A375_MHC_IP_R1	1	516.181396484375	2	516.208889	1030.40323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.522	1	43.522	43.022	44.022	0								0	0	0	0.16876	1	15136	15136		8.5933	1.304	1		+		7494	18858	5294	5344	7292	7292					-0.11075961649885357
DWGSFFFSA	9	Unmodified	_DWGSFFFSA_					0	0	0			REV__ENST00000586435.1_1_17:33316537-33318256:+|nuORF	REV__ENST00000586435.1_1_17:33316537-33318256:+|nuORF	MSMS	A375_MHC_IP_R2	2	532.198486328125	2	532.229625	1062.4447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.81	1	132.98	132.48	133.48	0.16487								0	0	0	0.15486	1	52247	52247		11.64	2.8949	1		+		7495	26387	5295	5345	7293	7293					-0.0840278089056028
DWIDSILAFS	10	Unmodified	_DWIDSILAFS_					0	0	0		nc|ENSG00000123358|P22736-2|NR4A1;ENSG00000123358|ENST00000394825|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	MULTI-SECPEP	A375_MHC_IP_R2	2	390.26409912109375	3	389.529123	1165.56554	-0.58574	-0.00022816	2.4549	0.00095624	1.8691	0.00072808	389.86383949657494	52.402	0.65739	53.154	52.831	53.489	0.75225					35	12	5	0	0	0	0.91909	1	19781	19781		8.4443	6.702	1	4847100			7496	3841	5296	5346	7294	7294					-0.010619979677585434
DWILFINSFK	10	Unmodified	_DWILFINSFK_					0	0	0			REV__nc|ENSG00000144285|P35498-3|SCN1A	REV__nc|ENSG00000144285|P35498-3|SCN1A	MULTI-MSMS	A375_MHC_IP_R1	1	428.12969970703125	3	428.23253	1281.67576	-0.29878	-0.00012795	-0.67317	-0.00028827	-0.97195	-0.00041622	428.2323212211645	19.307	0.55447	19.307	19.221	19.776	0					13	12	2	0	0	0	0.71763	1	4917	4917		4.4062	0.81909	1	3075400	+		7497	19415	5297	5347	7295	7295					0.04618847091251155
DWLFYFQCIEY	11	Unmodified	_DWLFYFQCIEY_					0	0	0		nc|ENSG00000179119|Q68D10-3|SPTY2D1	nc|ENSG00000179119|Q68D10-3|SPTY2D1	nc|ENSG00000179119|Q68D10-3|SPTY2D1	MSMS	A375_MHC_IP_R1	1	509.63690185546875	3	509.560206	1525.65879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.014	1	23.014	22.514	23.514	0								0	0	0	0.16297	1	6243	6243		1.3296	0.82369	1				7498	14791	5298	5348	7296	7296					-0.08301441576804791
DWLTKTEER	9	Unmodified	_DWLTKTEER_					0	0	0		nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD	nc|ENSG00000198947|P11532-4|DMD	nc|ENSG00000198947|P11532-4|DMD	MULTI-SECPEP	A375_MHC_IP_R1	1	588.708251953125	2	589.296027	1176.5775	-0.066754	-3.9338E-05	-2.6893	-0.0015848	-2.7561	-0.0016242	589.7957850415596	107.6	0.25648	107.6	107.39	107.65	0					7	4	2	0	0	0	0.67483	1	39473	39473		20.454	7.9221	1	747730			7499	9381	5299	5349	7297	7297					-0.00372381224565288
DWMCSSQNSY	10	Unmodified	_DWMCSSQNSY_					0	0	0		chr5:50799958-50815432|108|13.02|0.0|20.31|+|0|TE_info:MLT1A0,MLT1A0_dup6867,ERVL-MaLR,LTR,donor,+,50799662,50799958|None,PARP8|1	chr5:50799958-50815432|108|13.02|0.0|20.31|+|0|TE_info:MLT1A0,MLT1A0_dup6867,ERVL-MaLR,LTR,donor,+,50799662,50799958|None,PARP8|1	chr5:50799958-50815432|108|13.02|0.0|20.31|+|0|TE_info:MLT1A0,MLT1A0_dup6867,ERVL-MaLR,LTR,donor,+,50799662,50799958|None,PARP8|1	MULTI-SECPEP	A375_MHC_IP_R2	2	407.9288330078125	3	407.483079	1219.42741	-0.27192	-0.0001108	-0.1293	-5.2686E-05	-0.40122	-0.00016349	407.483067640443	19.377	0.40691	19.98	19.783	20.19	0.60308					14	7	2	0	0	0	0.94421	1	5943	5943		1.9064	1.9064	1	2615000			7500	487	5300	5350	7298	7298					-0.173528125501889
DWSEHEIA	8	Unmodified	_DWSEHEIA_					0	0	0		ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	493.1273498535156	2	493.714339	985.414125	-0.42921	-0.00021191	1.1318	0.00055878	0.70258	0.00034687	493.71533899208254	83.953	0.51318	84.693	84.407	84.92	0.73962					20	9	3	0	0	0	0.95423	1	31847	31847		18.135	18.135	1	1311300			7501	6320	5301	5351	7299	7299					-0.07916559275622603
DWSEHEIA	8	Unmodified	_DWSEHEIA_					0	0	0		ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	493.714339	985.414125	-0.55322	-0.00027313	1.9101	0.00094305	1.3569	0.00066992	493.7152906315619	84.633	0.56395	84.633	84.391	84.955	0	-0.030187	0.00014773	NaN	18.135	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1680100			7502	6320	5301	5351							-0.07916559275622603
DWSMSEEE	8	Unmodified	_DWSMSEEE_					0	0	0		ENSG00000166707|ENST00000650639|ZCCHC18	ENSG00000166707|ENST00000650639|ZCCHC18	ENSG00000166707|ENST00000650639|ZCCHC18	MULTI-MSMS	A375_MHC_IP_R2	2	507.14019775390625	2	506.681847	1011.34914	-0.72419	-0.00036693	0.51915	0.00026304	-0.20504	-0.00010389	506.6820609198473	76.19	0.60827	76.931	76.538	77.146	0.74052					15	11	2	0	0	0	0.75322	1	28905	28905		19.439	2.4967	1	1016300			7503	7104	5302	5352	7300	7300					-0.15607921863772845
DWTFSVANY	9	Unmodified	_DWTFSVANY_					0	0	0			REV__nc|ENSG00000083307|Q6ISB3-2|GRHL2	REV__nc|ENSG00000083307|Q6ISB3-2|GRHL2	MULTI-MSMS	A375_MHC_IP_R1	1	551.6947021484375	2	551.745639	1101.47673	-0.93929	-0.00051825	1.2618	0.00069618	0.32249	0.00017793	551.746420742545	68.022	1.0648	68.022	67.297	68.361	0					32	20	2	0	0	0	0.72985	1	24648	24648		4.3292	0.38484	1	2124900	+		7504	16803	5303	5353	7301	7301					-0.06995413207414458
DWVAVRGFLF	10	Unmodified	_DWVAVRGFLF_					0	0	0			REV__ENST00000425379.1_1_7:102788534-102789369:-|nuORF	REV__ENST00000425379.1_1_7:102788534-102789369:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	403.9508361816406	3	403.885353	1208.63423	-0.60167	-0.00024301	0.26797	0.00010823	-0.3337	-0.00013478	403.88547734967017	19.394	0.28278	19.394	19.238	19.521	0					7	5	2	0	0	0	0.71361	1	4840	4840		3.3196	0.24738	1	3359500	+		7505	24635	5304	5354	7302	7302					0.03825711122590292
DWVLTAAH	8	Unmodified	_DWVLTAAH_					0	0	0		nc|ENSG00000145649|P12544-2|GZMA;GZMA|p.F228Lfs*27|1|0.42|ENSG00000145649|chr5:55110073-55110073|C/-|frameshift_variant;ENSG00000145649|ENST00000274306|GZMA;ENSG00000105707|ENST00000672452|HPN	nc|ENSG00000145649|P12544-2|GZMA	nc|ENSG00000145649|P12544-2|GZMA	MULTI-SECPEP	A375_MHC_IP_R1	1	912.5844116210938	1	912.457393	911.450116	0.062328	5.6872E-05	-1.1456	-0.0010453	-1.0833	-0.00098844	912.4568896603362	117.77	1.5718	117.77	116.6	118.17	0					43	30	2	0	0	0	0.94479	1	42808	42808		13.508	4.1604	1	42060000			7506	2632	5305	5355	7303	7303					-0.009150573081114999
DWWERKRKWCF	11	Unmodified	_DWWERKRKWCF_					0	0	0			REV__nc|ENSG00000205482|P0DV79|SPDYE18	REV__nc|ENSG00000205482|P0DV79|SPDYE18	MULTI-MSMS	A375_MHC_IP_R1	1	821.3033447265625	2	820.40117	1638.78779	-0.5279	-0.00043309	1.0562	0.00086653	0.52832	0.00043344	820.9040437839672	91.224	0.45583	91.224	91.048	91.503	0					18	8	3	0	0	0	0.73886	1	33539	33539		1.3295	1.3295	1	3424200	+		7507	21863	5306	5356	7304	7304					-0.006056221033986731
DWWERKRKWCF	11	Unmodified	_DWWERKRKWCF_					0	0	0			REV__nc|ENSG00000205482|P0DV79|SPDYE18	REV__nc|ENSG00000205482|P0DV79|SPDYE18	MULTI-MSMS	A375_MHC_IP_R2	2	821.3038940429688	2	820.40117	1638.78779	-0.71578	-0.00058722	2.0029	0.0016432	1.2872	0.001056	820.9040879806698	90.502	0.35406	91.236	91.109	91.463	0.7345					12	6	2	0	0	0	0.73924	2	34460	34460;34509		0.35063	0.35063	1	2866500	+		7508	21863	5306	5356	7305;7306	7305					-0.006056221033986731
DWWERKRKWCF	11	Unmodified	_DWWERKRKWCF_					0	0	0			REV__nc|ENSG00000205482|P0DV79|SPDYE18	REV__nc|ENSG00000205482|P0DV79|SPDYE18	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	820.40117	1638.78779	-0.5279	-0.00043309	1.0562	0.00086653	0.52832	0.00043344	820.9040437839672	91.224	0.45583	91.224	91.048	91.503	0	-0.0058685	-0.00038795	NaN	1.3295	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3424200	+		7509	21863	5306	5356							-0.006056221033986731
DWWERKRKWCF	11	Unmodified	_DWWERKRKWCF_					0	0	0			REV__nc|ENSG00000205482|P0DV79|SPDYE18	REV__nc|ENSG00000205482|P0DV79|SPDYE18	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	820.40117	1638.78779	-0.71578	-0.00058722	2.0029	0.0016432	1.2872	0.001056	820.9040879806698	90.502	0.35406	91.236	91.109	91.463	0.7345	0.0058685	0.0011654	NaN	1.3295	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2866500	+		7510	21863	5306	5356							-0.006056221033986731
DYADEYIY	8	Unmodified	_DYADEYIY_					0	0	0			REV__ENSG00000009335|ENST00000348165|UBE3C;REV__ENST00000470408.5_1_7:157015856-157060446:+|nuORF	REV__ENSG00000009335|ENST00000348165|UBE3C	MSMS	A375_MHC_IP_R1	1	526.1765747070312	2	526.21638	1050.41821	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.1	1	73.1	72.6	73.6	0								0	0	0	0.16876	1	26608	26608		9.3474	1.4373	1		+		7511	16183;25105	5307	5357	7307	7307					-0.10498514572554996
DYCINQKKRE	10	Unmodified	_DYCINQKKRE_					0	0	0			REV__TRIM60|p.R324Q|2|0.14|ENSG00000176979|chr4:165041043-165041043|G/A|missense_variant	REV__TRIM60|p.R324Q|2|0.14|ENSG00000176979|chr4:165041043-165041043|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	432.6591491699219	3	432.883683	1295.62922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.181	1	85.181	84.681	85.681	0								0	0	0	0.15596	1	31215	31215		0.62683	0	1		+		7512	28904	5308	5358	7308	7308					-0.006769608022977991
DYCINQKKREY	11	Unmodified	_DYCINQKKREY_					0	0	0			REV__TRIM60|p.R324Q|2|0.14|ENSG00000176979|chr4:165041043-165041043|G/A|missense_variant	REV__TRIM60|p.R324Q|2|0.14|ENSG00000176979|chr4:165041043-165041043|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	730.3346557617188	2	730.353551	1458.69255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.62	1	133.78	133.28	134.28	0.16487								0	0	0	0.16312	1	52564	52564		2.4985	0	1		+		7513	28904	5309	5359	7309	7309					-0.018450200850566034
DYCKRRRWSLR	11	Unmodified	_DYCKRRRWSLR_					0	0	0			REV__ENST00000478390.1_1_3:121810579-121810666:+|nuORF	REV__ENST00000478390.1_1_3:121810579-121810666:+|nuORF	MSMS	A375_MHC_IP_R1	1	513.642822265625	3	513.608888	1537.80483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.793	1	46.793	46.293	47.293	0								0	0	0	0.16336	1	16436	16436		1.2148	0	1		+		7514	25214	5310	5360	7310	7310					0.0574429850244087
DYDSEDDNDW	10	Unmodified	_DYDSEDDNDW_					0	0	0		ENST00000490957.5_1_7:11013950-11101713:+|nuORF;nc|ENSG00000106443|O94880-1|PHF14;ENSG00000106443|ENST00000634607|PHF14	ENST00000490957.5_1_7:11013950-11101713:+|nuORF	ENST00000490957.5_1_7:11013950-11101713:+|nuORF	MSMS	A375_MHC_IP_R1	1	637.1558837890625	2	637.210012	1272.40547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.7	1	101.7	101.2	102.2	0								0	0	0	0.15435	1	37373	37373		6.7232	3.4419	1				7515	2690	5311	5361	7311	7311					-0.2198362249339425
DYDVFEQL	8	Unmodified	_DYDVFEQL_					0	0	0			REV__ENST00000444553.5_1_13:19625452-19630695:-|nuORF	REV__ENST00000444553.5_1_13:19625452-19630695:-|nuORF	MSMS	A375_MHC_IP_R2	2	514.6683959960938	2	514.732197	1027.44984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.56	1	101.33	100.83	101.83	0.76278								0	0	0	0.16876	1	38129	38129		23.148	3.7094	1		+		7516	24835	5312	5362	7312	7312					-0.06278521818603622
DYDYHFWEEFY	11	Unmodified	_DYDYHFWEEFY_					0	0	0		UGT2A3|p.Q357Rfs*19|1|0.11|ENSG00000135220|chr4:68931170-68931170|G/-|frameshift_variant;ENSG00000135220|ENST00000251566|UGT2A3	UGT2A3|p.Q357Rfs*19|1|0.11|ENSG00000135220|chr4:68931170-68931170|G/-|frameshift_variant	UGT2A3|p.Q357Rfs*19|1|0.11|ENSG00000135220|chr4:68931170-68931170|G/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	538.4180908203125	3	538.545502	1612.61468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.093	1	22.712	22.212	23.212	0.61932								0	0	0	0.16358	1	6998	6998		0.094841	0.094841	1				7517	4656	5313	5363	7313	7313					-0.16712754469449465
DYDYHFWEEFY	11	Unmodified	_DYDYHFWEEFY_					0	0	0		UGT2A3|p.Q357Rfs*19|1|0.11|ENSG00000135220|chr4:68931170-68931170|G/-|frameshift_variant;ENSG00000135220|ENST00000251566|UGT2A3	UGT2A3|p.Q357Rfs*19|1|0.11|ENSG00000135220|chr4:68931170-68931170|G/-|frameshift_variant	UGT2A3|p.Q357Rfs*19|1|0.11|ENSG00000135220|chr4:68931170-68931170|G/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	538.612548828125	3	538.545502	1612.61468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.31	1	96.061	95.561	96.561	0.75045								0	0	0	0.16358	1	36208	36208		0.094841	0	1				7518	4656	5313	5363	7314	7314					-0.16712754469449465
DYEEDYGDY	9	Unmodified	_DYEEDYGDY_					0	0	0			REV__nc|ENSG00000085231|Q9Y3D8-2|AK6	REV__nc|ENSG00000085231|Q9Y3D8-2|AK6	MSMS	A375_MHC_IP_R1	1	584.6824951171875	2	584.701291	1167.38803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.077	1	93.077	92.577	93.577	0								0	0	0	0.15486	1	34211	34211		4.756	2.4533	1		+		7519	16831	5314	5364	7315	7315					-0.1889691802841753
DYEEYEEYE	9	Unmodified	_DYEEYEEYE_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	A375_MHC_IP_R1	1	634.7939453125	2	634.727506	1267.44046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.45	1	148.45	147.95	148.95	0								0	0	0	0.15486	1	56688	56688		0.52476	0.12405	1		+		7520	19932	5315	5365	7316	7316					-0.18256379685431057
DYEYCCPCEW	10	Unmodified	_DYEYCCPCEW_					0	0	0		ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	MULTI-SECPEP	A375_MHC_IP_R2	2	655.8306274414062	2	655.711767	1309.40898	-0.69099	-0.00045309	-3.5814	-0.0023484	-4.2724	-0.0028014	656.2119496389574	94.047	0.5059	94.792	94.463	94.969	0.74474					19	9	3	0	0	0	0.94819	1	35793	35793		0.45834	0.10771	1	1548600			7521	8151	5316	5366	7317	7317					-0.23334690516412593
DYFYWTLAY	9	Unmodified	_DYFYWTLAY_					0	0	0		COLGALT1|p.S493F|1|0.42|ENSG00000130309|chr19:17580782-17580782|C/T|missense_variant	COLGALT1|p.S493F|1|0.42|ENSG00000130309|chr19:17580782-17580782|C/T|missense_variant	COLGALT1|p.S493F|1|0.42|ENSG00000130309|chr19:17580782-17580782|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	621.25390625	2	621.279315	1240.54408	-0.62954	-0.00039112	-0.53077	-0.00032975	-1.1603	-0.00072087	621.2789362886512	89.891	0.20576	90.623	90.442	90.648	0.7318					5	3	2	0	0	0	0.68216	1	34185	34185		8.5933	1.4916	1	1119500			7522	563	5317	5367	7318	7318					-0.06657382996445449
DYGCYCGIGGS	11	Unmodified	_DYGCYCGIGGS_					0	0	0		ENSG00000188784|ENST00000375116|PLA2G2E	ENSG00000188784|ENST00000375116|PLA2G2E	ENSG00000188784|ENST00000375116|PLA2G2E	MULTI-MSMS	A375_MHC_IP_R2	2	548.098388671875	2	547.699517	1093.38448	-0.73096	-0.00040035	-1.1232	-0.00061517	-1.8541	-0.0010155	547.6988063678942	46.027	0.65512	46.792	46.453	47.108	0.76519					22	12	2	0	0	0	0.73078	1	17277	17277		8.1555	0.24537	1	2061900			7523	8935	5318	5368	7319	7319					-0.15847582607602817
DYGGDCHYECT	11	Unmodified	_DYGGDCHYECT_					0	0	0			REV__ENSG00000102359|ENST00000373004|SRPX2	REV__ENSG00000102359|ENST00000373004|SRPX2	MSMS	A375_MHC_IP_R2	2	631.6450805664062	2	631.70807	1261.40159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.34	1	111.07	110.57	111.57	0.73692								0	0	0	0.16302	1	41623	41623		2.9952	0	1		+		7524	17216	5319	5369	7320	7320					-0.21865706792459605
DYHRLFIDND	10	Unmodified	_DYHRLFIDND_					0	0	0			REV__nc|ENSG00000137393|Q7Z419-2|RNF144B	REV__nc|ENSG00000137393|Q7Z419-2|RNF144B	MULTI-MSMS	A375_MHC_IP_R2	2	654.7032470703125	2	654.304384	1306.59421	-1.1372	-0.00074406	0.43848	0.0002869	-0.69869	-0.00045716	654.3047923649051	61.772	0.65525	62.514	62.118	62.774	0.74263					26	12	3	0	0	0	0.71466	1	23379	23379		5.7319	0	1	4192000	+		7525	19002	5320	5370	7321	7321					-0.046818803386031504
DYHRRQREKRL	11	Unmodified	_DYHRRQREKRL_					0	0	0		PHLDB2|p.E435K|1|0.08|ENSG00000144824|chr3:111885380-111885380|G/A|missense_variant	PHLDB2|p.E435K|1|0.08|ENSG00000144824|chr3:111885380-111885380|G/A|missense_variant	PHLDB2|p.E435K|1|0.08|ENSG00000144824|chr3:111885380-111885380|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	519.6522216796875	3	519.622073	1555.84439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.16	1	101.92	101.42	102.42	0.76428								0	0	0	0.16309	1	38346	38346		2.6312	2.1767	1				7526	15169	5321	5371	7322	7322					0.08870141777515528
DYINVGSWDN	10	Unmodified	_DYINVGSWDN_					0	0	0		nc|ENSG00000168959|P41594-3|GRM5;nc|ENSG00000168959|P41594-2|GRM5;ENSG00000168959|ENST00000305447|GRM5;GRM5|p.G490E|1|0.3|ENSG00000168959|chr11:88597278-88597278|C/T|missense_variant	nc|ENSG00000168959|P41594-3|GRM5	nc|ENSG00000168959|P41594-3|GRM5	MULTI-SECPEP	A375_MHC_IP_R1	1	591.1849975585938	2	591.756735	1181.49892	-0.41785	-0.00024726	0.37511	0.00022197	-0.042739	-2.5291E-05	591.7569066898908	64.994	0.55669	64.994	64.7	65.257	0					17	10	2	0	0	0	0.77698	1	23562	23562		28.495	11.382	1	1479000			7527	7366	5322	5372	7323	7323					-0.08457233529634323
DYKHTRLFEG	10	Unmodified	_DYKHTRLFEG_					0	0	0			REV__nc|ENSG00000096088|P20142-2|PGC	REV__nc|ENSG00000096088|P20142-2|PGC	MULTI-MSMS	A375_MHC_IP_R1	1	423.2819519042969	3	422.547288	1264.62004	0.05825	2.4614E-05	0.22716	9.5987E-05	0.28541	0.0001206	422.54720366359606	55.991	1.0662	55.991	55.482	56.548	0					77	20	5	0	0	0	0.67512	1	19951	19951		9.7643	0	1	17956000	+		7528	17005	5323	5373	7324	7324					-0.001689860963551837
DYKHTRLFEG	10	Unmodified	_DYKHTRLFEG_					0	0	0			REV__nc|ENSG00000096088|P20142-2|PGC	REV__nc|ENSG00000096088|P20142-2|PGC	MULTI-MSMS	A375_MHC_IP_R2	2	422.9472351074219	3	422.547288	1264.62004	-0.2488	-0.00010513	0.40411	0.00017076	0.15531	6.5625E-05	422.5472676092961	55.195	1.0676	55.945	55.422	56.489	0.75075					67	20	4	0	0	0	0.60608	1	20742	20742		13.519	3.2034	1	17129000	+		7529	17005	5323	5373	7325	7325					-0.001689860963551837
DYKVPARAY	9	Unmodified	_DYKVPARAY_					0	0	0			REV__ENSG00000151748|ENST00000324679|SAV1	REV__ENSG00000151748|ENST00000324679|SAV1	MULTI-SECPEP	A375_MHC_IP_R2	2	541.2090454101562	2	541.785099	1081.55564	-1.0523	-0.00057015	-1.1125	-0.00060271	-2.1648	-0.0011729	541.78460132038	50.075	0.40737	50.829	50.599	51.006	0.75406					11	7	2	0	0	0	0.69504	1	18856	18856		12.532	12.073	1	723180	+		7530	19771	5324	5374	7326	7326					0.01812858817538654
DYLADKSYI	9	Unmodified	_DYLADKSYI_					0	0	0		ENST00000479587.1_1_2:207024402-207025435:+|nuORF;ENST00000460760.1_1_2:207024637-207025435:+|nuORF;ENSG00000114942|ENST00000392222|EEF1B2;ENST00000414101.1_1_3:174777654-174777819:-|nuORF	ENST00000479587.1_1_2:207024402-207025435:+|nuORF	ENST00000479587.1_1_2:207024402-207025435:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	544.241943359375	2	544.268947	1086.52334	-0.89305	-0.00048606	0.99177	0.00053979	0.098725	5.3733E-05	544.7712821030964	67.433	0.96771	67.433	66.887	67.854	0					44	18	4	0	0	0	0.44024	2	24496	24496;24515		22.736	8.8302	1	3496400			7531	3259	5325	5375	7327;7328	7327					-0.01645973376139409
DYLADKSYI	9	Unmodified	_DYLADKSYI_					0	0	0		ENST00000479587.1_1_2:207024402-207025435:+|nuORF;ENST00000460760.1_1_2:207024637-207025435:+|nuORF;ENSG00000114942|ENST00000392222|EEF1B2;ENST00000414101.1_1_3:174777654-174777819:-|nuORF	ENST00000479587.1_1_2:207024402-207025435:+|nuORF	ENST00000479587.1_1_2:207024402-207025435:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	544.2418823242188	2	544.268947	1086.52334	-0.88606	-0.00048225	0.68674	0.00037377	-0.19932	-0.00010848	544.2690181679893	66.886	0.76183	67.623	67.24	68.001	0.73631					23	14	2	0	0	0	0.27064	1	25280	25280		32.786	8.7651	1	4284100			7532	3259	5325	5375	7329	7329					-0.01645973376139409
DYLEYWLILDY	11	Unmodified	_DYLEYWLILDY_					0	0	0		ENSG00000198515|ENST00000514170|CNGA1	ENSG00000198515|ENST00000514170|CNGA1	ENSG00000198515|ENST00000514170|CNGA1	MSMS	A375_MHC_IP_R1	1	502.6580810546875	3	502.578143	1504.7126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.466	1	87.466	86.966	87.966	0								0	0	0	0.16269	1	32093	32093		4.7159	2.2811	1				7533	9275	5326	5376	7330	7330					-0.019569458734622458
DYLEYWLILDY	11	Unmodified	_DYLEYWLILDY_					0	0	0		ENSG00000198515|ENST00000514170|CNGA1	ENSG00000198515|ENST00000514170|CNGA1	ENSG00000198515|ENST00000514170|CNGA1	MSMS	A375_MHC_IP_R2	2	502.6510314941406	3	502.578143	1504.7126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.654	1	20.264	19.764	20.764	0.61029								0	0	0	0.16334	1	6055	6055		1.3296	0.11481	1				7534	9275	5326	5376	7331	7331					-0.019569458734622458
DYMQDQFTV	9	Unmodified	_DYMQDQFTV_					0	0	0		ENSG00000179008|ENST00000321731|C14orf39	ENSG00000179008|ENST00000321731|C14orf39	ENSG00000179008|ENST00000321731|C14orf39	MULTI-MSMS	A375_MHC_IP_R1	1	573.7365112304688	2	573.742239	1145.46993	-0.18315	-0.00010508	-2.3114	-0.0013262	-2.4946	-0.0014312	574.2438213644663	77.714	0.71301	77.714	77.386	78.099	0					19	13	2	0	0	0	0.58047	1	28387	28387		15.847	5.0233	1	1217500			7535	8198	5327	5377	7332	7332					-0.0969909415030088
DYNDKYWDQRY	11	Unmodified	_DYNDKYWDQRY_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	MSMS	A375_MHC_IP_R2	2	522.6527099609375	3	522.560034	1564.65827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.34	1	107.1	106.6	107.6	0.75977								0	0	0	0.16336	1	40199	40199		1.2148	0.70888	1				7536	4259	5328	5378	7333	7333					-0.10147144972347633
DYNKEDSNY	9	Unmodified	_DYNKEDSNY_					0	0	0			REV__ADAM28|p.P160S|1|0.84|ENSG00000042980|chr8:24313482-24313482|C/T|missense_variant	REV__ADAM28|p.P160S|1|0.84|ENSG00000042980|chr8:24313482-24313482|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	574.1605834960938	2	574.23055	1146.44655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.193	1	60.193	59.693	60.693	0								0	0	0	0.15486	1	21668	21668		6.7232	0.51738	1		+		7537	15315	5329	5379	7334	7334					-0.12081816663271638
DYNSQEDY	8	Unmodified	_DYNSQEDY_					0	0	0			REV__nc|ENSG00000270647|Q92804-2|TAF15	REV__nc|ENSG00000270647|Q92804-2|TAF15	MULTI-MSMS	A375_MHC_IP_R1	1	517.2132568359375	2	517.190894	1032.36723	-0.38436	-0.00019879	-0.41942	-0.00021692	-0.80377	-0.0004157	517.1907295346804	43.409	0.50946	43.409	43.043	43.553	0					13	9	2	0	0	0	0.77781	1	15085	15085		2.8892	0	1	1176500	+		7538	22941	5330	5380	7335	7335					-0.14765463617413843
DYPDDEEED	9	Unmodified	_DYPDDEEED_					0	0	0		nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-5|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	MSMS	A375_MHC_IP_R1	1	376.1368408203125	3	376.128013	1125.36221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.44	1	140.44	139.94	140.94	0								0	0	0	0.15486	1	53942	53942		1.0715	0	1				7539	10008	5331	5381	7336	7336					-0.19545812270689567
DYPDDEEED	9	Unmodified	_DYPDDEEED_					0	0	0		nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-5|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	MSMS	A375_MHC_IP_R2	2	376.13714599609375	3	376.128013	1125.36221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.44	1	140.49	139.99	140.99	0.04216								0	0	0	0.15486	1	54978	54978		1.0715	0	1				7540	10008	5331	5381	7337	7337					-0.19545812270689567
DYQALRTSI	9	Unmodified	_DYQALRTSI_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	A375_MHC_IP_R1	1	533.694091796875	2	533.780013	1065.54547	-0.70838	-0.00037812	-0.10835	-5.7836E-05	-0.81673	-0.00043595	533.7800241821793	59.017	0.91495	59.017	58.633	59.548	0					51	17	4	0	0	0	0.010042	1	21203	21203		124.95	49.192	1	39039000			7541	5230	5332	5382	7338	7338					0.015322510922942456
DYQALRTSI	9	Unmodified	_DYQALRTSI_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	A375_MHC_IP_R2	2	534.2178344726562	2	533.780013	1065.54547	-1.0591	-0.00056533	-0.058931	-3.1456E-05	-1.118	-0.00059679	533.7800621853114	58.272	0.81242	59.021	58.729	59.542	0.74894					53	15	5	0	0	0	0.011093	1	22062	22062		117.84	51.381	1	43598000			7542	5230	5332	5382	7339	7339					0.015322510922942456
DYRKFHQFVY	10	Unmodified	_DYRKFHQFVY_					0	0	0			REV__ENST00000504117.1_1_5:93752768-93812878:-|nuORF	REV__ENST00000504117.1_1_5:93752768-93812878:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	702.2471923828125	2	701.848761	1401.68297	-0.63977	-0.00044902	-1.0004	-0.00070214	-1.6402	-0.0011512	701.8480306497721	128.91	0.30725	128.91	128.79	129.09	0					18	5	4	0	0	0	0.63381	1	49539	49539		38.176	3.7738	1	69062000	+		7543	21882	5333	5383	7340	7340					-0.0018042030828837596
DYRMKEWS	8	Unmodified	_DYRMKEWS_					0	0	0		ENSG00000147123|ENST00000377811|NDUFB11	ENSG00000147123|ENST00000377811|NDUFB11	ENSG00000147123|ENST00000377811|NDUFB11	MULTI-SECPEP	A375_MHC_IP_R1	1	372.6158142089844	3	372.171053	1113.49133	0.38497	0.00014328	0.11135	4.1442E-05	0.49632	0.00018472	372.50535551631833	39.339	0.30356	39.339	39.187	39.491	0					8	5	2	0	0	0	0.972	1	13370	13370		4.897	2.6142	1	1471400			7544	5660	5334	5384	7341	7341					-0.060876643309256906
DYRRDALYY	9	Unmodified	_DYRRDALYY_					0	0	0			REV__nc|ENSG00000166938|Q8TF46-2|DIS3L	REV__nc|ENSG00000166938|Q8TF46-2|DIS3L	MULTI-MSMS	A375_MHC_IP_R1	1	412.59967041015625	3	412.199889	1233.57784	0.13075	5.3896E-05	-0.31836	-0.00013123	-0.18761	-7.7334E-05	412.1996995286989	36.185	0.50647	36.185	35.932	36.439	0					24	9	4	0	0	0	0.67152	1	12109	12109		9.544	4.0207	1	4445600	+		7545	20719	5335	5385	7342	7342					-0.029609615046865656
DYRRDALYY	9	Unmodified	_DYRRDALYY_					0	0	0			REV__nc|ENSG00000166938|Q8TF46-2|DIS3L	REV__nc|ENSG00000166938|Q8TF46-2|DIS3L	MULTI-MSMS	A375_MHC_IP_R2	2	412.5997314453125	3	412.199889	1233.57784	-0.22579	-9.307E-05	-0.12483	-5.1456E-05	-0.35062	-0.00014453	412.19996381111525	35.339	0.45432	36.102	35.829	36.283	0.76338					24	8	4	0	0	0	0.41879	1	12808	12808		23.79	12.891	1	5331300	+		7546	20719	5335	5385	7343	7343					-0.029609615046865656
DYRRDALYY	9	Unmodified	_DYRRDALYY_					0	0	0			REV__nc|ENSG00000166938|Q8TF46-2|DIS3L	REV__nc|ENSG00000166938|Q8TF46-2|DIS3L	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	412.199889	1233.57784	0.13075	5.3896E-05	-0.31836	-0.00013123	-0.18761	-7.7334E-05	412.1996995286989	36.185	0.50647	36.185	35.932	36.439	0	0.041612	-9.1327E-05	NaN	23.79	24	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4445600	+		7547	20719	5335	5385							-0.029609615046865656
DYRRDALYY	9	Unmodified	_DYRRDALYY_					0	0	0			REV__nc|ENSG00000166938|Q8TF46-2|DIS3L	REV__nc|ENSG00000166938|Q8TF46-2|DIS3L	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	412.199889	1233.57784	-0.22579	-9.307E-05	-0.12483	-5.1456E-05	-0.35062	-0.00014453	412.19996381111525	35.339	0.45432	36.102	35.829	36.283	0.76338	-0.041612	0.00014799	NaN	23.79	24	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5331300	+		7548	20719	5335	5385							-0.029609615046865656
DYSFLQAYY	9	Unmodified	_DYSFLQAYY_					0	0	0		SMG8|p.L137F|1|0.31|ENSG00000167447|chr17:59210460-59210460|C/T|missense_variant	SMG8|p.L137F|1|0.31|ENSG00000167447|chr17:59210460-59210460|C/T|missense_variant	SMG8|p.L137F|1|0.31|ENSG00000167447|chr17:59210460-59210460|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	585.1597900390625	2	585.261122	1168.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.14	1	33.892	33.392	34.392	0.75225								0	0	0	0.15486	1	11848	11848		11.64	0.84079	1				7549	29210	5336	5386	7344	7344					-0.06982259893175069
DYTGAAYAQY	10	Unmodified	_DYTGAAYAQY_					0	0	0		ENST00000510826.1_1_6:17290237-17292347:+|nuORF;nc|ENSG00000112183|Q9BX46-5|RBM24;nc|ENSG00000112183|Q9BX46-2|RBM24;ENSG00000112183|ENST00000379052|RBM24	ENST00000510826.1_1_6:17290237-17292347:+|nuORF	ENST00000510826.1_1_6:17290237-17292347:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	562.1924438476562	2	561.740554	1121.46655	-0.20612	-0.00011579	-0.63063	-0.00035425	-0.83676	-0.00047004	561.7402901594611	108.41	1.8788	108.41	107.75	109.63	0					40	36	2	0	0	0	0.69306	1	39544	39544		13.906	2.2658	1	1579700			7550	3057	5337	5387	7345	7345					-0.08932020932661544
DYTVKLWD	8	Unmodified	_DYTVKLWD_					0	0	0		ENSG00000164338|ENST00000296792|UTP15;nc|ENSG00000164338|Q8TED0-3|UTP15	ENSG00000164338|ENST00000296792|UTP15	ENSG00000164338|ENST00000296792|UTP15	MULTI-MSMS	A375_MHC_IP_R2	2	521.68408203125	2	520.258382	1038.50221	-0.92183	-0.00047959	-0.34821	-0.00018116	-1.27	-0.00066075	520.2582453984775	71.809	3.1998	72.543	72.061	75.261	0.73421					205	62	7	0	0	0	0.77583	1	27706	27706		10.074	1.4806	1	705380000			7551	6829	5338	5388	7346	7346					-0.015499386850024166
DYVQIPYEV	9	Unmodified	_DYVQIPYEV_					0	0	0		ENSG00000180251|ENST00000295269|SLC9A4;SLC9A4|p.I258Rfs*44|1|0.47|ENSG00000180251|chr2:102503499-102503500|AT/-|frameshift_variant	ENSG00000180251|ENST00000295269|SLC9A4;SLC9A4|p.I258Rfs*44|1|0.47|ENSG00000180251|chr2:102503499-102503500|AT/-|frameshift_variant	ENSG00000180251|ENST00000295269|SLC9A4	MULTI-MSMS	A375_MHC_IP_R1	1	563.6773681640625	2	563.276772	1124.53899	-0.29493	-0.00016613	-0.11708	-6.5947E-05	-0.41201	-0.00023207	563.276670379983	117.84	0.65927	117.84	117.56	118.22	0					22	12	2	0	0	0	0.04447	2	43313	43281;43313		66.457	11.738	1	9029700			7552	8286;29197	5339	5389	7347;7348	7348					-0.01829686859082358
DYWIADPIY	9	Unmodified	_DYWIADPIY_					0	0	0			REV__ENSG00000090402|ENST00000264382|SI	REV__ENSG00000090402|ENST00000264382|SI	MULTI-MSMS	A375_MHC_IP_R2	2	579.6769409179688	2	578.27149	1154.52843	-0.378	-0.00021859	-1.6562	-0.00095772	-2.0342	-0.0011763	578.2698052522383	54.795	1.018	55.546	55.169	56.187	0.75075					56	19	5	0	0	0	0.6898	1	20630	20630		7.9102	0.62092	1	13748000	+		7553	16925	5340	5390	7349	7349					-0.042656695135292466
EAAAIEGISFG	11	Unmodified	_EAAAIEGISFG_					0	0	0			REV__nc|ENSG00000087460|P84996|GNAS	REV__nc|ENSG00000087460|P84996|GNAS	MULTI-MSMS	A375_MHC_IP_R1	1	532.6923217773438	2	532.766571	1063.51859	-0.50471	-0.00026889	-0.092561	-4.9314E-05	-0.59727	-0.0003182	532.7664812469361	70.352	0.8671	70.352	69.983	70.85	0					49	16	4	0	0	0	0.73016	1	25708	25708		8.7454	0	1	32740000	+		7554	27128	5341	5391	7350	7350					-0.010628575189002731
EAAARNLLEF	10	Unmodified	_EAAARNLLEF_					0	0	0		ENST00000469908.5_2_16:2390982-2391318:+|nuORF	ENST00000469908.5_2_16:2390982-2391318:+|nuORF	ENST00000469908.5_2_16:2390982-2391318:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	567.7005615234375	2	567.301113	1132.58767	-0.3238	-0.00018369	-1.0859	-0.00061601	-1.4097	-0.0007997	567.3005259454704	70.319	0.71011	71.053	70.642	71.352	0.73421					17	13	3	0	0	0	0.92076	1	26671	26671		10.151	4.8537	1	1596100			7555	12329	5342	5392	7351	7351					0.026682265006684247
EAADLTSDKK	10	Unmodified	_EAADLTSDKK_					0	0	0			REV__nc|ENSG00000137944|Q6YP21-3|KYAT3	REV__nc|ENSG00000137944|Q6YP21-3|KYAT3	MSMS	A375_MHC_IP_R2	2	539.208251953125	2	539.274761	1076.53497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.767	1	41.541	41.041	42.041	0.77451								0	0	0	0.14919	1	15106	15106		19.362	0.98885	1		+		7556	19050	5343	5393	7352	7352					-0.0002377635280481627
EAAEHYSCV	9	Unmodified	_EAAEHYSCV_					0	0	0		ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	504.1205749511719	2	504.708199	1007.40185	-0.5447	-0.00027491	0.82056	0.00041414	0.27586	0.00013923	504.70869730847284	53.022	0.70905	53.022	52.643	53.352	0					19	13	2	0	0	0	0.39388	1	18862	18862		25.399	18.11	1	2642000			7557	2807	5344	5394	7353	7353					-0.10155919010310299
EAAELQRSL	9	Unmodified	_EAAELQRSL_					0	0	0		ENSG00000226321|ENST00000690015|CROCC2	ENSG00000226321|ENST00000690015|CROCC2	ENSG00000226321|ENST00000690015|CROCC2	MULTI-SECPEP	A375_MHC_IP_R1	1	508.6512451171875	2	508.772188	1015.52982	-0.58869	-0.00029951	0.49493	0.00025181	-0.093763	-4.7704E-05	508.77223369896785	36.906	0.30054	36.906	36.745	37.045	0					8	5	2	0	0	0	0.50484	1	12370	12370		22.658	3.2961	1	1503600			7558	9703	5345	5395	7354	7354					0.022679645752418764
EAAELQRSL	9	Unmodified	_EAAELQRSL_					0	0	0		ENSG00000226321|ENST00000690015|CROCC2	ENSG00000226321|ENST00000690015|CROCC2	ENSG00000226321|ENST00000690015|CROCC2	MULTI-SECPEP	A375_MHC_IP_R2	2	508.6508483886719	2	508.772188	1015.52982	-0.87465	-0.000445	0.21056	0.00010712	-0.6641	-0.00033788	508.7720856481458	36.068	0.56155	36.833	36.641	37.202	0.76552					13	10	2	0	0	0	0.46121	1	13080	13080		20.581	15.825	1	2264200			7559	9703	5345	5395	7355	7355					0.022679645752418764
EAAGEGPALY	10	Unmodified	_EAAGEGPALY_					0	0	0		ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENSG00000100823|ENST00000216714|APEX1	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	489.6318664550781	2	489.232364	976.450176	-0.92426	-0.00045218	-0.056039	-2.7416E-05	-0.9803	-0.0004796	489.23229716614225	52.169	0.45694	52.922	52.677	53.134	0.75225					13	8	2	0	0	0	0.6774	1	19670	19670		34.402	3.1334	1	2025600			7560	2224	5346	5396	7356	7356					-0.038991020987623415
EAAIYQPSV	9	Unmodified	_EAAIYQPSV_					0	0	0		nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1	nc|ENSG00000104413|Q6NXG1-2|ESRP1	nc|ENSG00000104413|Q6NXG1-2|ESRP1	MSMS	A375_MHC_IP_R1	1	489.18194580078125	2	489.250557	976.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.332	1	29.332	28.832	29.832	0								0	0	0	0.15283	1	9159	9159		16.942	1.0951	1				7561	2509	5347	5397	7357	7357					-0.00262225202038735
EAAKHLSTMG	10	Unmodified	_EAAKHLSTMG_					0	0	0			REV__ENSG00000213337|ENST00000393537|ANKRD39	REV__ENSG00000213337|ENST00000393537|ANKRD39	MSMS	A375_MHC_IP_R1	1	522.6661987304688	2	522.760766	1043.50698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.524	1	58.524	58.024	59.024	0								0	0	0	0.1524	1	21024	21024		13.042	2.2185	1		+		7562	22618	5348	5398	7358	7358					-0.01303377813883344
EAALEKQAL	9	Unmodified	_EAALEKQAL_					0	0	0		ENSG00000058453|ENST00000375541|CROCC;ENST00000466256.6_1_1:17257024-17267483:+|nuORF	ENSG00000058453|ENST00000375541|CROCC	ENSG00000058453|ENST00000375541|CROCC	MULTI-MSMS	A375_MHC_IP_R1	1	487.17156982421875	2	486.771657	971.528761	-0.1361	-6.6248E-05	0.02609	1.27E-05	-0.11001	-5.3549E-05	486.7716426494277	62.583	0.71764	62.583	62.3	63.018	0					25	13	3	0	0	0	0.034481	1	22617	22617		71.134	9.7761	1	4845300			7563	1293	5349	5399	7359	7359					0.04185750206340799
EAALHAAAI	9	Unmodified	_EAALHAAAI_					0	0	0		IQGAP1|p.V221A|1|0.4|ENSG00000140575|chr15:90441518-90441518|T/C|missense_variant	IQGAP1|p.V221A|1|0.4|ENSG00000140575|chr15:90441518-90441518|T/C|missense_variant	IQGAP1|p.V221A|1|0.4|ENSG00000140575|chr15:90441518-90441518|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	434.1398010253906	2	433.74016	865.465767	-0.54951	-0.00023834	-2.2488	-0.0009754	-2.7983	-0.0012137	433.74020087868	58.205	1.4721	58.954	58.272	59.744	0.74894					37	28	2	0	0	0	0.69504	1	22027	22027		12.532	0	1	2567000			7564	14173	5350	5400	7360	7360					0.027652292089328512
EAALMAEFDN	10	Unmodified	_EAALMAEFDN_					0	0	0		nc|ENSG00000030304|O15146-3|MUSK;nc|ENSG00000030304|O15146-2|MUSK;ENSG00000030304|ENST00000374448|MUSK	nc|ENSG00000030304|O15146-3|MUSK	nc|ENSG00000030304|O15146-3|MUSK	MULTI-MSMS	A375_MHC_IP_R1	1	555.6796875	2	555.742239	1109.46993	-0.37868	-0.00021045	-0.47574	-0.00026439	-0.85442	-0.00047483	555.7425916042898	54.103	1.2661	54.103	53.505	54.771	0					51	23	3	0	0	0	0.6502	1	19489	19489		17.113	4.0704	1	8871800			7565	14459	5351	5401	7361	7361					-0.08043094150298202
EAALNTIKP	9	Unmodified	_EAALNTIKP_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-MSMS	A375_MHC_IP_R1	1	479.1294860839844	2	478.7742	955.533846	-0.50886	-0.00024363	0.10538	5.0455E-05	-0.40348	-0.00019318	478.774248532205	34.278	0.65653	34.278	34.103	34.759	0					18	12	2	0	0	0	0.44024	1	11339	11339		22.736	0	1	4206300			7566	3923	5352	5402	7362	7362					0.0543005406894963
EAANKLIV	8	Unmodified	_EAANKLIV_					0	0	0			REV__PRKRIP1|p.P24L|1|0.45|ENSG00000128563|chr7:102396482-102396482|C/T|missense_variant	REV__PRKRIP1|p.P24L|1|0.45|ENSG00000128563|chr7:102396482-102396482|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	429.61346435546875	2	429.258185	856.501818	-0.73417	-0.00031515	0.41505	0.00017816	-0.31912	-0.00013699	429.2583331121951	33.845	0.30367	34.597	34.399	34.702	0.75225					8	5	2	0	0	0	0.94587	1	12088	12088		20.454	3.5113	1	1336800	+		7567	27839	5353	5403	7363	7363					0.06782686385804482
EAAPESFGML	10	Unmodified	_EAAPESFGML_					0	0	0			REV__ENSG00000144655|ENST00000273153|CSRNP1	REV__ENSG00000144655|ENST00000273153|CSRNP1	MSMS	A375_MHC_IP_R2	2	526.2603149414062	2	526.241875	1050.4692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.432	1	84.171	83.671	84.671	0.73962								0	0	0	0.15158	1	31710	31710		14.838	2.3067	1		+		7568	19438	5354	5404	7364	7364					-0.054018887993379394
EAAQELLDGN	10	Unmodified	_EAAQELLDGN_					0	0	0		nc|ENSG00000166938|Q8TF46-3|DIS3L;ENST00000564909.5_1_15:66585934-66618751:+|nuORF;nc|ENSG00000166938|Q8TF46-2|DIS3L;nc|ENSG00000166938|Q8TF46-4|DIS3L;ENSG00000166938|ENST00000319212|DIS3L	nc|ENSG00000166938|Q8TF46-3|DIS3L	nc|ENSG00000166938|Q8TF46-3|DIS3L	MSMS	A375_MHC_IP_R2	2	530.17919921875	2	530.251286	1058.48802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.64	1	133.81	133.31	134.31	0.16487								0	0	0	0.15181	1	52575	52575		14.405	2.1647	1				7569	7135	5355	5405	7365	7365					-0.03888635903922477
EAARGWKR	8	Unmodified	_EAARGWKR_					0	0	0		ENST00000351554.7_1_11:33753007-33757986:-|nuORF	ENST00000351554.7_1_11:33753007-33757986:-|nuORF	ENST00000351554.7_1_11:33753007-33757986:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	487.9771423339844	2	487.26995	972.525347	-0.93241	-0.00045434	-0.79458	-0.00038718	-1.727	-0.00084151	487.2694592444838	22.312	0.71448	22.932	22.49	23.204	0.61932					19	13	3	0	0	0	0.972	1	7038	7038		5.2307	0	1	1642100			7570	10927	5356	5406	7366	7366					0.03798544942992521
EAARKVIR	8	Unmodified	_EAARKVIR_					0	0	0		ENST00000524001.1_1_8:21768344-21770030:-|nuORF;ENSG00000147443|ENST00000276420|DOK2	ENST00000524001.1_1_8:21768344-21770030:-|nuORF	ENST00000524001.1_1_8:21768344-21770030:-|nuORF	MSMS	A375_MHC_IP_R2	2	471.466552734375	2	471.795801	941.577048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.002	1	30.701	30.201	31.201	0.69872								0	0	0	0.16876	1	10518	10518		7.9102	0	1				7571	5682	5357	5407	7367	7367					0.10392288636910507
EAARRKARE	9	Unmodified	_EAARRKARE_					0	0	0		nc|ENSG00000141577|Q9UPN4-3|CEP131;ENSG00000141577|ENST00000450824|CEP131;nc|ENSG00000141577|Q9UPN4|CEP131	nc|ENSG00000141577|Q9UPN4-3|CEP131	nc|ENSG00000141577|Q9UPN4-3|CEP131	MSMS	A375_MHC_IP_R1	1	362.9125671386719	3	362.875739	1085.60539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.016	1	28.016	27.516	28.516	0								0	0	0	0.15486	1	8583	8583		3.8763	0	1				7572	5260	5358	5408	7368	7368					0.06600986546163767
EAARSGCCDSP	11	Unmodified	_EAARSGCCDSP_					0	0	0		ENST00000609776.1_1_2:222437801-222438248:+|nuORF	ENST00000609776.1_1_2:222437801-222438248:+|nuORF	ENST00000609776.1_1_2:222437801-222438248:+|nuORF	MSMS	A375_MHC_IP_R1	1	548.14453125	2	548.213323	1094.41209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.83	1	76.83	76.33	77.33	0								0	0	0	0.16124	1	28013	28013		12.241	4.3305	1				7573	13937	5359	5409	7369	7369					-0.1313367934735652
EAATLLGKLY	10	Unmodified	_EAATLLGKLY_					0	0	0			REV__ENSG00000144815|ENST00000273347|NXPE3	REV__ENSG00000144815|ENST00000273347|NXPE3	MULTI-SECPEP	A375_MHC_IP_R1	1	539.6963500976562	2	539.810782	1077.60701	-0.87594	-0.00047284	-0.047506	-2.5644E-05	-0.92345	-0.00049849	539.8105186711791	66.697	0.45885	66.697	66.428	66.887	0					14	8	3	0	0	0	0.61429	1	24089	24089		37.974	8.8924	1	1149700	+		7574	19446	5360	5410	7370	7370					0.07131182791590618
EAATLLGKLY	10	Unmodified	_EAATLLGKLY_					0	0	0			REV__ENSG00000144815|ENST00000273347|NXPE3	REV__ENSG00000144815|ENST00000273347|NXPE3	MULTI-SECPEP	A375_MHC_IP_R2	2	540.1792602539062	2	539.810782	1077.60701	-1.0495	-0.00056651	-0.28431	-0.00015348	-1.3338	-0.00071998	540.3118169101015	65.84	0.45737	66.578	66.222	66.68	0.73811					10	8	2	0	0	0	0.61429	1	24934	24934		37.974	15.238	1	1336900	+		7575	19446	5360	5410	7371	7371					0.07131182791590618
EAAVAVVHALP	11	Unmodified	_EAAVAVVHALP_					0	0	0		nc|ENSG00000147799|Q9C0H5|ARHGAP39;ENSG00000147799|ENST00000377307|ARHGAP39	nc|ENSG00000147799|Q9C0H5|ARHGAP39	nc|ENSG00000147799|Q9C0H5|ARHGAP39	MULTI-SECPEP	A375_MHC_IP_R2	2	538.6401977539062	2	538.808574	1075.60259	-0.8148	-0.00043902	-0.081056	-4.3673E-05	-0.89585	-0.00048269	538.8086934070477	78.517	0.40531	79.261	78.982	79.387	0.74474					10	7	2	0	0	0	0.90584	1	29724	29724		12.241	0	1	861260			7576	5705	5361	5411	7372	7372					0.06781718368665679
EAAVVLEAA	9	Unmodified	_EAAVVLEAA_					0	0	0		nc|ENSG00000168061|A6NKF1-2|SAC3D1;ENST00000530213.5_1_11:64808530-64811777:+|nuORF;ENSG00000168061|ENST00000652489|SAC3D1;nc|ENSG00000168061|A6NKF1|SAC3D1	nc|ENSG00000168061|A6NKF1-2|SAC3D1	nc|ENSG00000168061|A6NKF1-2|SAC3D1	MSMS	A375_MHC_IP_R1	1	436.66583251953125	2	436.739825	871.465098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.467	1	40.467	39.967	40.967	0								0	0	0	0.15069	1	13908	13908		20.454	0	1				7577	7259	5362	5412	7373	7373					0.024223897692309038
EAAYRALTL	9	Unmodified	_EAAYRALTL_					0	0	0		ENST00000589338.5_1_19:55853250-55854220:+|nuORF;ENSG00000133247|ENST00000255613|KMT5C	ENST00000589338.5_1_19:55853250-55854220:+|nuORF	ENST00000589338.5_1_19:55853250-55854220:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	504.1205749511719	2	504.279649	1006.54475	-0.45599	-0.00022995	0.49643	0.00025034	0.040446	2.0396E-05	504.2799876974211	53.241	1.1168	53.241	52.744	53.861	0					33	21	3	0	0	0	0.71541	1	18862	18862		11.64	1.4569	1	3005200			7578	4497	5363	5413	7374	7374					0.04173456443231771
EACCCCCGDEM	11	Unmodified	_EACCCCCGDEM_					0	0	0		ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC;nc|ENSG00000135272|Q9P1T7-1|MDFIC	ENST00000431629.5_2_7:114654517-114655986:+|nuORF	ENST00000431629.5_2_7:114654517-114655986:+|nuORF	MSMS	A375_MHC_IP_R1	1	583.6634521484375	2	583.641116	1165.26768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.924	1	43.924	43.424	44.424	0								0	0	0	0.1636	1	15299	15299		0	0	1				7579	4663	5364	5414	7375	7375					-0.3083447147721472
EACGAQAGPW	10	Unmodified	_EACGAQAGPW_					0	0	0			REV__ENSG00000164764|ENST00000297354|SBSPON	REV__ENSG00000164764|ENST00000297354|SBSPON	MSMS	A375_MHC_IP_R1	1	495.1839599609375	2	495.210909	988.407265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.792	1	95.792	95.292	96.292	0								0	0	0	0.15308	1	35209	35209		10.824	0.64053	1		+		7580	20515	5365	5415	7376	7376					-0.0874019542784481
EACGAQAGPW	10	Unmodified	_EACGAQAGPW_					0	0	0			REV__ENSG00000164764|ENST00000297354|SBSPON	REV__ENSG00000164764|ENST00000297354|SBSPON	MSMS	A375_MHC_IP_R2	2	495.1839599609375	2	495.210909	988.407265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.922	1	95.668	95.168	96.168	0.74635								0	0	0	0.15417	1	36065	36065		7.2892	0	1		+		7581	20515	5365	5415	7377	7377					-0.0874019542784481
EACTCLPLV	9	2 Carbamidomethyl (C)	_EAC(Carbamidomethyl (C))TC(Carbamidomethyl (C))LPLV_	EAC(1)TC(1)LPLV		EAC(42)TC(42)LPLV		0	2	0			REV__ENST00000252809.3_1_19:18499751-18499865:+|nuORF	REV__ENST00000252809.3_1_19:18499751-18499865:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	532.2308959960938	2	531.751553	1061.48855	-0.73506	-0.00039087	-4.3831	-0.0023307	-5.1182	-0.0027216	531.7483302208624	48.732	0.60973	49.489	49.08	49.69	0.75737					15	11	2	0	0	0	0.1478	1	18311	18311		42.095	13.608	1	1873100	+		7582	23131	5366	5416	7378	7378	80;81				-0.03973255780101681
EACTWCCDP	9	Unmodified	_EACTWCCDP_					0	0	0			REV__ENST00000566897.5_1_16:30064796-30075160:+|nuORF	REV__ENST00000566897.5_1_16:30064796-30075160:+|nuORF	MSMS	A375_MHC_IP_R2	2	514.1851806640625	2	514.169538	1026.32452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.5	1	101.26	100.76	101.76	0.76278								0	0	0	0.15486	1	38108	38108		4.3292	1.7518	1		+		7583	26244	5367	5417	7379	7379					-0.18758596542534178
EADAFFAFFF	10	Unmodified	_EADAFFAFFF_					0	0	0			REV__OR5AS1|p.S106F|1|0.31|ENSG00000181785|chr11:56030735-56030735|C/T|missense_variant	REV__OR5AS1|p.S106F|1|0.31|ENSG00000181785|chr11:56030735-56030735|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	606.8273315429688	2	606.274032	1210.53351	-0.39275	-0.00023811	-2.353	-0.0014265	-2.7457	-0.0016647	606.7753015833779	80.06	0.35924	80.06	79.828	80.187	0					13	6	3	0	0	0	0.88918	1	29169	29169		18.146	1.0335	1	2353300	+		7584	27688	5368	5418	7380	7380					-0.06333365650903033
EADAVDEQWPG	11	Unmodified	_EADAVDEQWPG_					0	0	0			REV__ENST00000442552.7_1_1:17085068-17087541:-|nuORF	REV__ENST00000442552.7_1_1:17085068-17087541:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	608.6909790039062	2	608.759475	1215.5044	-0.62485	-0.00038038	0.12365	7.5272E-05	-0.5012	-0.00030511	608.7594047235339	36.32	0.56006	37.091	36.799	37.359	0.7709					24	10	3	0	0	0	0.72728	1	13346	13346		11.495	2.1116	1	3463900	+		7585	21228	5369	5419	7381	7381					-0.0947355473783773
EADCSKLHFL	10	Unmodified	_EADCSKLHFL_					0	0	0			REV__ENST00000309534.10_1_3:88104512-88104548:-|nuORF	REV__ENST00000309534.10_1_3:88104512-88104548:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	388.2806091308594	3	388.190225	1161.54884	-0.17188	-6.6722E-05	0.31823	0.00012353	0.14635	5.6811E-05	388.19012201563044	32.248	0.35599	32.985	32.806	33.162	0.73692					9	6	2	0	0	0	0.71944	1	11524	11524		1.7423	0.14999	1	1467100	+		7586	23488	5370	5420	7382	7382					-0.025468221253504453
EADDERLY	8	Unmodified	_EADDERLY_					0	0	0		ENSG00000136274|ENST00000490531|NACAD	ENSG00000136274|ENST00000490531|NACAD	ENSG00000136274|ENST00000490531|NACAD	MULTI-MSMS	A375_MHC_IP_R2	2	506.16864013671875	2	505.724904	1009.43525	-0.91855	-0.00046453	-0.10896	-5.5106E-05	-1.0275	-0.00051964	505.7248595918536	40.825	0.6611	41.599	41.285	41.946	0.77451					19	12	2	0	0	0	0.7754	1	15187	15187		11.64	2.8949	1	3504000			7587	4778	5371	5421	7383	7383					-0.06908593966750232
EADELLNKF	9	Unmodified	_EADELLNKF_					0	0	0		nc|ENSG00000196961|O95782|AP2A1;ENSG00000196961|ENST00000354293|AP2A1;ENST00000597774.5_1_19:50303271-50309027:+|nuORF	nc|ENSG00000196961|O95782|AP2A1	nc|ENSG00000196961|O95782|AP2A1	MULTI-SECPEP	A375_MHC_IP_R2	2	539.1241455078125	2	539.774396	1077.53424	-0.67542	-0.00036457	-0.2985	-0.00016112	-0.97392	-0.0005257	539.7742820978466	47.337	0.50934	48.099	47.817	48.326	0.76128					14	9	2	0	0	0	0.75519	1	17676	17676		14.838	0	1	2414400			7588	9095	5372	5422	7384	7384					-0.001425710018565951
EADIEKLNQ	9	Unmodified	_EADIEKLNQ_					0	0	0		ENSG00000076382|ENST00000321765|SPAG5;ENST00000580676.1_1_17:26905530-26906263:-|nuORF	ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	MULTI-SECPEP	A375_MHC_IP_R1	1	529.9625244140625	2	530.269478	1058.5244	-0.092108	-4.8842E-05	0.97331	0.00051611	0.8812	0.00046727	530.2697572669083	48.913	0.45534	48.913	48.629	49.084	0					13	8	2	0	0	0	0.67539	1	17287	17287		21.537	2.175	1	1524900			7589	1635	5373	5423	7385	7385					-0.002517590072557141
EADIYLNIT	9	Unmodified	_EADIYLNIT_					0	0	0		ENST00000586685.1_1_17:41365081-41368011:+|nuORF;nc|ENSG00000184988|Q96A25-2|TMEM106A;ENSG00000184988|ENST00000612339|TMEM106A	ENST00000586685.1_1_17:41365081-41368011:+|nuORF	ENST00000586685.1_1_17:41365081-41368011:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	527.1900024414062	2	526.268947	1050.52334	-0.011726	-6.171E-06	-2.0368	-0.0010719	-2.0485	-0.0010781	526.2669921883497	48.919	1.0621	48.919	48.223	49.285	0					39	20	3	0	0	0	0.32092	1	17333	17333		29.082	7.5446	1	12823000			7590	8627	5374	5424	7386	7386					0.00010026623840531101
EADLKEWK	8	Unmodified	_EADLKEWK_					0	0	0			REV__ENSG00000154240|ENST00000535342|CEP112	REV__ENSG00000154240|ENST00000535342|CEP112	MULTI-MSMS	A375_MHC_IP_R1	1	511.18963623046875	2	509.763832	1017.51311	-0.52148	-0.00026583	0.044103	2.2482E-05	-0.47738	-0.00024335	509.7638565636462	41.952	1.5246	41.952	41.215	42.739	0					78	29	6	0	0	0	0.70629	1	14539	14539		32.786	2.1491	1	94773000	+		7591	19872	5375	5425	7387	7387					0.0050546368928507945
EADLRYSLN	9	Unmodified	_EADLRYSLN_					0	0	0			REV__ENSG00000081277|ENST00000367324|PKP1	REV__ENSG00000081277|ENST00000367324|PKP1	MSMS	A375_MHC_IP_R1	1	540.7687377929688	2	540.769645	1079.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.81	1	53.81	53.31	54.31	0								0	0	0	0.15273	1	19193	19193		17.113	3.2068	1		+		7592	16773	5376	5426	7388	7388					-0.011843392873743142
EADQLWKF	8	Unmodified	_EADQLWKF_					0	0	0		nc|ENSG00000214128|A2RRL7-4|TMEM213	nc|ENSG00000214128|A2RRL7-4|TMEM213	nc|ENSG00000214128|A2RRL7-4|TMEM213	MULTI-SECPEP	A375_MHC_IP_R1	1	518.970947265625	2	518.758549	1035.50255	-0.14228	-7.3807E-05	-2.4562	-0.0012742	-2.5985	-0.001348	519.2607149906057	49.465	0.45707	49.465	49.235	49.692	0					14	8	2	0	0	0	0.972	1	17572	17572		5.2307	3.3864	1	2125400			7593	14896	5377	5427	7389	7389					-0.013785189651343899
EADREAIAF	9	Unmodified	_EADREAIAF_					0	0	0		nc|ENSG00000185792|Q7RTR0-2|NLRP9;ENSG00000185792|ENST00000332836|NLRP9	nc|ENSG00000185792|Q7RTR0-2|NLRP9;ENSG00000185792|ENST00000332836|NLRP9	ENSG00000185792|ENST00000332836|NLRP9	MULTI-SECPEP	A375_MHC_IP_R1	1	511.9882507324219	2	511.251089	1020.48762	-0.46517	-0.00023782	-0.10173	-5.2008E-05	-0.5669	-0.00028983	511.2509633481159	34.129	0.30498	34.129	33.898	34.203	0					9	5	2	0	0	0	0.69507	1	11238	11238		19.257	2.1441	1	1994500			7594	14814;8693	5378	5428	7390	7390					-0.021800108331490264
EADRSTSQRI	10	Unmodified	_EADRSTSQRI_					0	0	0		CADM3|p.G218E|1|0.26|ENSG00000162706|chr1:159194002-159194002|G/A|missense_variant	CADM3|p.G218E|1|0.26|ENSG00000162706|chr1:159194002-159194002|G/A|missense_variant	CADM3|p.G218E|1|0.26|ENSG00000162706|chr1:159194002-159194002|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	388.6059875488281	3	388.198548	1161.57381	0.13159	5.1083E-05	-0.63856	-0.00024789	-0.50697	-0.00019681	388.19841375337523	27.508	0.35347	27.508	27.28	27.634	0					9	6	2	0	0	0	0.83355	1	8384	8384		7.4771	7.4771	1	1332600			7595	282	5379	5429	7391	7391					-0.0005105099842239724
EADTQEGADF	10	Unmodified	_EADTQEGADF_					0	0	0		tr|U7SIY9|U7SIY9_FUSNUDelta-aminolevulinicaciddehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02281PE=3SV=1	tr|U7SIY9|U7SIY9_FUSNUDelta-aminolevulinicaciddehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02281PE=3SV=1	tr|U7SIY9|U7SIY9_FUSNUDelta-aminolevulinicaciddehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02281PE=3SV=1	MSMS	A375_MHC_IP_R2	2	541.697998046875	2	541.717276	1081.42	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.487	1	49.244	48.744	49.744	0.75737								0	0	0	0.15308	1	18208	18208		10.824	0.75	1				7596	29436	5380	5430	7392	7392					-0.11745505554608826
EADWRVDRVP	10	Unmodified	_EADWRVDRVP_					0	0	0			REV__GPRIN2|p.S377T|1|0.05|ENSG00000204175|chr10:46549608-46549608|A/T|missense_variant	REV__GPRIN2|p.S377T|1|0.05|ENSG00000204175|chr10:46549608-46549608|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	415.2788391113281	3	414.879038	1241.61528	0.12606	5.23E-05	-0.12888	-5.3471E-05	-0.0028231	-1.1713E-06	414.87895018344017	41.834	0.41086	41.834	41.571	41.982	0					13	7	2	0	0	0	0.93873	1	14509	14509		5.0475	0	1	1575900	+		7597	22493	5381	5431	7393	7393					0.004141297608839523
EADYGRSCD	9	Unmodified	_EADYGRSCD_					0	0	0		ENSG00000141639|ENST00000400384|MAPK4	ENSG00000141639|ENST00000400384|MAPK4	ENSG00000141639|ENST00000400384|MAPK4	MSMS	A375_MHC_IP_R1	1	508.14093017578125	2	508.192913	1014.37127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.303	1	52.303	51.803	52.803	0								0	0	0	0.15486	1	18595	18595		10.074	2.7847	1				7598	5264	5382	5432	7394	7394					-0.13533697395348554
EAEARSSARY	10	Unmodified	_EAEARSSARY_					0	0	0			REV__chr20:58994239-58994682|168|20.92|0.96|4.45|+|1|NELFCD,None|2	REV__chr20:58994239-58994682|168|20.92|0.96|4.45|+|1|NELFCD,None|2	MSMS	A375_MHC_IP_R1	1	570.199951171875	2	570.275626	1138.5367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.647	1	51.647	51.147	52.147	0								0	0	0	0.14983	1	18339	18339		18.146	1.9972	1		+		7599	15743	5383	5433	7395	7395					-0.027027225441770497
EAEDPDCF	8	Unmodified	_EAEDPDCF_					0	0	0		ENST00000237536.8_2_20:35406325-35406529:-|nuORF	ENST00000237536.8_2_20:35406325-35406529:-|nuORF	ENST00000237536.8_2_20:35406325-35406529:-|nuORF	MSMS	A375_MHC_IP_R1	1	463.1720275878906	2	463.165833	924.317113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.746	1	19.746	19.246	20.246	0								0	0	0	0.16876	1	4970	4970		2.5775	0	1				7600	10161	5384	5434	7396	7396					-0.14807289546922675
EAEDTRSSVP	10	Unmodified	_EAEDTRSSVP_					0	0	0			REV__ENSG00000124827|ENST00000379491|GCM2	REV__ENSG00000124827|ENST00000379491|GCM2	MULTI-SECPEP	A375_MHC_IP_R2	2	363.9339599609375	3	364.171887	1089.49383	-0.14373	-5.2341E-05	-1.0055	-0.00036618	-1.1492	-0.00041852	364.1714598628541	44.99	0.81493	45.759	45.492	46.307	0.7691					22	15	2	0	0	0	0.92957	1	16867	16867		3.3196	1.8645	1	2537400	+		7601	18326	5385	5435	7397	7397					-0.04733537392257858
EAEEQTAPEVP	11	Unmodified	_EAEEQTAPEVP_					0	0	0			REV__nc|ENSG00000154429|Q6IQ19-3|CCSAP	REV__nc|ENSG00000154429|Q6IQ19-3|CCSAP	MSMS	A375_MHC_IP_R2	2	600.1952514648438	2	600.274958	1198.53536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.894	1	76.635	76.135	77.135	0.74052								0	0	0	0.16152	1	28811	28811		10.8	2.0541	1		+		7602	19883	5386	5436	7398	7398					-0.0559640142362241
EAEFAFLSP	9	Unmodified	_EAEFAFLSP_					0	0	0		ENST00000398606.7_1_11:67354028-67354130:+|nuORF	ENST00000398606.7_1_11:67354028-67354130:+|nuORF	ENST00000398606.7_1_11:67354028-67354130:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	505.6451721191406	2	505.745108	1009.47566	-0.62299	-0.00031507	0.76447	0.00038663	0.14148	7.1554E-05	506.24595778909554	69.24	0.50658	69.974	69.727	70.234	0.73479					19	9	3	0	0	0	0.76187	1	26255	26255		7.2892	3.3448	1	1463900			7603	11523	5387	5437	7399	7399					-0.02869627576342282
EAEFGVLDK	9	Unmodified	_EAEFGVLDK_					0	0	0		ENSG00000197579|ENST00000360538|TOPORS;nc|ENSG00000197579|Q9NS56-2|TOPORS	ENSG00000197579|ENST00000360538|TOPORS	ENSG00000197579|ENST00000360538|TOPORS	MULTI-MSMS	A375_MHC_IP_R2	2	504.6559753417969	2	504.25584	1006.49713	-1.2142	-0.00061229	1.228	0.00061924	0.013788	6.9527E-06	504.2564253436361	52.929	0.45617	53.68	53.487	53.944	0.75105					14	8	2	0	0	0	0.10411	1	19990	19990		49.933	8.0934	1	1613700			7604	9172	5388	5438	7400	7400					-0.005862425476152566
EAEFGYSG	8	Unmodified	_EAEFGYSG_					0	0	0			REV__nc|ENSG00000211777|A0A0B4J244|TRAV3	REV__nc|ENSG00000211777|A0A0B4J244|TRAV3	MULTI-SECPEP	A375_MHC_IP_R2	2	859.779541015625	1	859.346839	858.339563	-0.58983	-0.00050687	-0.06067	-5.2136E-05	-0.6505	-0.00055901	859.3466350835344	63.007	0.8597	63.749	63.333	64.193	0.74263					37	16	3	0	0	0	0.69059	1	23961	23961		46.921	8.7697	1	5868500	+		7605	27474	5389	5439	7401	7401					-0.09527322086989898
EAEGKYEEY	9	Unmodified	_EAEGKYEEY_					0	0	0		ENST00000540493.1_12:132859905-132863044:-|nuORF;ENST00000424720.2_12:132824120-132905933:-|nuORF;nc|ENSG00000182870|Q9HCQ5|GALNT9;ENSG00000182870|ENST00000328957|GALNT9	ENST00000540493.1_12:132859905-132863044:-|nuORF	ENST00000540493.1_12:132859905-132863044:-|nuORF	MSMS	A375_MHC_IP_R1	1	559.2631225585938	2	559.237844	1116.46113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.533	1	85.533	85.033	86.033	0								0	0	0	0.15486	1	31347	31347		11.64	0	1				7606	8442	5390	5440	7402	7402					-0.09243744515129038
EAEHEQVPN	9	Unmodified	_EAEHEQVPN_					0	0	0			REV__nc|ENSG00000186654|P85299-2|PRR5	REV__nc|ENSG00000186654|P85299-2|PRR5	MULTI-SECPEP	A375_MHC_IP_R1	1	527.1358642578125	2	526.735803	1051.45705	-0.68877	-0.0003628	1.2168	0.00064096	0.52807	0.00027815	526.7361599850825	41.201	0.91092	41.201	40.559	41.47	0					25	17	2	0	0	0	0.4261	1	14194	14194		30.637	30.637	1	5067800	+		7607	21981	5391	5441	7403	7403					-0.06661789218173908
EAEHEQVPN	9	Unmodified	_EAEHEQVPN_					0	0	0			REV__nc|ENSG00000186654|P85299-2|PRR5	REV__nc|ENSG00000186654|P85299-2|PRR5	MULTI-SECPEP	A375_MHC_IP_R2	2	527.1355590820312	2	526.735803	1051.45705	-0.54927	-0.00028932	1.1262	0.0005932	0.57691	0.00030388	526.7360018614238	40.44	0.50924	41.215	40.98	41.489	0.77451					17	9	2	0	0	0	0.4261	1	14995	14995		30.637	30.637	1	4171100	+		7608	21981	5391	5441	7404	7404					-0.06661789218173908
EAEIIRKY	8	Unmodified	_EAEIIRKY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111591276-111591579:+|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	A375_MHC_IP_R1	1	511.9617004394531	2	511.287474	1020.5604	-0.79376	-0.00040584	1.0431	0.00053334	0.24937	0.0001275	511.7898465154477	30.294	0.60442	30.294	30.15	30.754	0					21	11	2	0	0	0	0.55873	1	9725	9725		58.679	10.333	1	3724800			7609	5434	5392	5442	7405	7405					0.05093742960286818
EAEIIRKY	8	Unmodified	_EAEIIRKY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111591276-111591579:+|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	A375_MHC_IP_R2	2	511.9613037109375	2	511.287474	1020.5604	-1.227	-0.00062736	-0.082065	-4.1959E-05	-1.3091	-0.00066932	511.28753558609964	29.716	0.65551	30.415	30.134	30.79	0.69872					22	12	2	0	0	0	0.55873	1	10449	10449		58.679	10.333	1	3561900			7610	5434	5392	5442	7406	7406					0.05093742960286818
EAELLVLR	8	Unmodified	_EAELLVLR_					0	0	0		ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	MULTI-MSMS	A375_MHC_IP_R1	1	471.71630859375	2	471.784567	941.554582	-0.37491	-0.00017688	2.4391	0.0011507	2.0642	0.00097386	471.7846538767558	52.262	0.30276	52.262	52.034	52.336	0					9	5	2	0	0	0	0.72008	1	18565	18565		28.487	5.3384	1	669860			7611	10031	5393	5443	7407	7407					0.0814664444861819
EAELPLLDL	9	Unmodified	_EAELPLLDL_					0	0	0		nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400	nc|ENSG00000183495|Q96L91-4|EP400	nc|ENSG00000183495|Q96L91-4|EP400	MULTI-SECPEP	A375_MHC_IP_R1	1	507.13983154296875	2	506.78169	1011.54883	-0.52715	-0.00026715	-3.5155	-0.0017816	-4.0426	-0.0020487	506.7798263946141	94.981	0.255	94.981	94.752	95.007	0					5	4	2	0	0	0	0.65246	1	34886	34886		15.847	7.937	1	360760			7612	8499	5394	5444	7408	7408					0.04351501146300052
EAELQNWL	8	Unmodified	_EAELQNWL_					0	0	0			REV__nc|ENSG00000047932|Q9HD26-3|GOPC	REV__nc|ENSG00000047932|Q9HD26-3|GOPC	MULTI-MSMS	A375_MHC_IP_R2	2	501.65570068359375	2	501.748182	1001.48181	-0.89505	-0.00044909	-0.38794	-0.00019465	-1.283	-0.00064374	501.74817695492993	56.315	1.2221	57.065	56.237	57.459	0.75014					38	23	2	0	0	0	0.76654	1	20989	20989		15.847	1.0089	1	5384000	+		7613	16366	5395	5445	7409	7409					-0.018871093448183274
EAEMDLDNDCL	11	Unmodified	_EAEMDLDNDCL_					0	0	0			REV__ENST00000430529.1_1_2:317965-318007:+|nuORF	REV__ENST00000430529.1_1_2:317965-318007:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	634.6444702148438	2	634.244486	1266.47442	-0.57021	-0.00036165	0.57038	0.00036176	0.00017194	1.0905E-07	634.2450657402962	56.032	0.65979	56.032	55.635	56.295	0					20	9	3	0	0	0	0.73378	1	20092	20092		5.2969	1.7004	1	2457500	+		7614	24696	5396	5446	7410	7410					-0.14815997789696667
EAEMFSLKTIL	11	Unmodified	_EAEMFSLKTIL_					0	0	0		ENSG00000139514|ENST00000380752|SLC7A1;ENST00000473577.1_1_13:30091265-30093642:-|nuORF	ENSG00000139514|ENST00000380752|SLC7A1	ENSG00000139514|ENST00000380752|SLC7A1	MULTI-MSMS	A375_MHC_IP_R1	1	429.291015625	3	427.896818	1280.66863	0.30075	0.00012869	-0.22672	-9.7012E-05	0.074034	3.1679E-05	427.8967273001395	69.249	1.1666	69.249	68.616	69.782	0					60	22	5	0	0	0	0.73332	1	25001	25001		2.6312	0	1	26615000			7615	5082	5397	5447	7411	7411					0.039517464285609094
EAEPHPLWEY	10	Unmodified	_EAEPHPLWEY_					0	0	0		ENST00000568463.1_1_16:68389580-68391124:+|nuORF;ENST00000568975.5_1_16:68386292-68391124:+|nuORF;nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7	ENST00000568463.1_1_16:68389580-68391124:+|nuORF	ENST00000568463.1_1_16:68389580-68391124:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	636.1895141601562	2	635.790578	1269.5666	-0.5988	-0.00038071	0.056028	3.5622E-05	-0.54277	-0.00034509	635.7905709693146	77.978	1.4225	77.978	77.436	78.859	0					72	27	4	0	0	0	0.0075909	1	28335	28335		131.27	93.294	1	24829000			7616	4424	5398	5448	7412	7412					-0.057397835988467705
EAEPHPLWEY	10	Unmodified	_EAEPHPLWEY_					0	0	0		ENST00000568463.1_1_16:68389580-68391124:+|nuORF;ENST00000568975.5_1_16:68386292-68391124:+|nuORF;nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7	ENST00000568463.1_1_16:68389580-68391124:+|nuORF	ENST00000568463.1_1_16:68389580-68391124:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	423.927978515625	3	424.196144	1269.5666	-0.13648	-5.7892E-05	1.5065	0.00063907	1.3701	0.00058118	424.19674567643114	34.494	0.60667	34.494	34.203	34.81	0					18	11	2	0	0	0	0.93578	1	11289	11289		5.7834	4.4538	1	1694000			7617	4424	5398	5448	7413	7413					-0.057397835988467705
EAEPHPLWEY	10	Unmodified	_EAEPHPLWEY_					0	0	0		ENST00000568463.1_1_16:68389580-68391124:+|nuORF;ENST00000568975.5_1_16:68386292-68391124:+|nuORF;nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7	ENST00000568463.1_1_16:68389580-68391124:+|nuORF	ENST00000568463.1_1_16:68389580-68391124:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	636.1897583007812	2	635.790578	1269.5666	-0.79039	-0.00050252	0.076825	4.8844E-05	-0.71356	-0.00045368	635.7905894650227	77.202	1.3227	77.945	77.453	78.776	0.74293					73	25	4	0	0	0	0.00022086	2	29214	29214;29429		152.41	120.11	1	20774000			7618	4424	5398	5448	7414;7415	7414					-0.057397835988467705
EAEPRLWSSA	10	Unmodified	_EAEPRLWSSA_					0	0	0			REV__IGSF9|p.R1110W|1|0.37|ENSG00000085552|chr1:159927790-159927790|G/A|missense_variant	REV__IGSF9|p.R1110W|1|0.37|ENSG00000085552|chr1:159927790-159927790|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	573.1669311523438	2	573.28292	1144.55129	-0.063866	-3.6613E-05	-0.28284	-0.00016214	-0.3467	-0.00019876	573.2825421986121	42.754	1.4202	42.754	42.082	43.502	0					58	27	3	0	0	0	0.77698	1	14850	14850		28.495	16.254	1	2878500	+		7619	26785	5399	5449	7416	7416					-0.015206503960371265
EAEPRLWSSA	10	Unmodified	_EAEPRLWSSA_					0	0	0			REV__IGSF9|p.R1110W|1|0.37|ENSG00000085552|chr1:159927790-159927790|G/A|missense_variant	REV__IGSF9|p.R1110W|1|0.37|ENSG00000085552|chr1:159927790-159927790|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	573.16650390625	2	573.28292	1144.55129	-0.22577	-0.00012943	-0.47603	-0.0002729	-0.70179	-0.00040233	573.2825648034906	42.081	1.4267	42.854	42.047	43.473	0.77374					63	27	3	0	0	0	0.63381	1	15625	15625		38.176	4.0731	1	3102400	+		7620	26785	5399	5449	7417	7417					-0.015206503960371265
EAEQSQQQY	9	Unmodified	_EAEQSQQQY_					0	0	0			REV__ENSG00000172361|ENST00000398545|CFAP53	REV__ENSG00000172361|ENST00000398545|CFAP53	MSMS	A375_MHC_IP_R2	2	555.6575927734375	2	555.738542	1109.46253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.194	1	49.951	49.451	50.451	0.75737								0	0	0	0.15486	1	18482	18482		11.64	1.4569	1		+		7621	21139	5400	5450	7418	7418					-0.08782110426363943
EAERKLQAKFE	11	Unmodified	_EAERKLQAKFE_					0	0	0		ENST00000517342.1_1_8:57389388-57389772:-|nuORF	ENST00000517342.1_1_8:57389388-57389772:-|nuORF	ENST00000517342.1_1_8:57389388-57389772:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	450.645263671875	3	450.245498	1347.71466	-0.44796	-0.00020169	-0.60913	-0.00027426	-1.0571	-0.00047595	450.24501935413883	23.559	0.66109	23.559	23.381	24.042	0					16	12	2	0	0	0	0.67594	1	6500	6500		17.42	0.37138	1	23416000			7622	12958	5401	5451	7419	7419					0.05471527654981401
EAERWATQF	9	Unmodified	_EAERWATQF_					0	0	0			REV__nc|ENSG00000173040|Q86UK5-2|EVC2	REV__nc|ENSG00000173040|Q86UK5-2|EVC2	MULTI-MSMS	A375_MHC_IP_R2	2	569.1823120117188	2	569.269813	1136.52507	-0.54984	-0.00031301	1.0602	0.00060355	0.51038	0.00029055	569.2702830217436	35.005	1.4694	35.768	35.017	36.486	0.76338					82	28	4	0	0	0	0.55471	1	12421	12421		17.113	4.5813	1	43954000	+		7623	21190	5402	5452	7420	7420					-0.037729195675410665
EAERWRFAF	9	Unmodified	_EAERWRFAF_					0	0	0			REV__ENST00000488315.5_1_7:149570449-149570881:-|nuORF	REV__ENST00000488315.5_1_7:149570449-149570881:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	606.2139892578125	2	606.301447	1210.58834	-0.42903	-0.00026012	-0.74195	-0.00044985	-1.171	-0.00070997	606.80249411139	45.545	0.35382	46.31	46.099	46.453	0.76518					10	6	2	0	0	0	0.58047	1	16972	16972		15.847	1.9411	1	1528200	+		7624	25348	5403	5453	7421	7421					-0.00852934059639665
EAERWRFAF	9	Unmodified	_EAERWRFAF_					0	0	0			REV__ENST00000488315.5_1_7:149570449-149570881:-|nuORF	REV__ENST00000488315.5_1_7:149570449-149570881:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	606.301447	1210.58834	-0.34921	-0.00021173	-1.1594	-0.00070296	-1.5086	-0.00091469	606.300999427093	46.37	0.24991	46.37	46.195	46.444	0	0.029756	-0.00042338	NaN	15.847	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1416200	+		7625	25348	5403	5453							-0.00852934059639665
EAERWRFAF	9	Unmodified	_EAERWRFAF_					0	0	0			REV__ENST00000488315.5_1_7:149570449-149570881:-|nuORF	REV__ENST00000488315.5_1_7:149570449-149570881:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	606.301447	1210.58834	-0.42903	-0.00026012	-0.74195	-0.00044985	-1.171	-0.00070997	606.80249411139	45.545	0.35382	46.31	46.099	46.453	0.76518	-0.029756	8.2841E-05	NaN	15.847	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1528200	+		7626	25348	5403	5453							-0.00852934059639665
EAESHTLTY	9	Unmodified	_EAESHTLTY_					0	0	0		nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX;ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX;nc|ENSG00000088826|Q9NWM0-5|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	MULTI-SECPEP	A375_MHC_IP_R1	1	525.15576171875	2	525.740554	1049.46655	-0.43824	-0.0002304	1.4805	0.00077838	1.0423	0.00054798	525.741594076177	43.728	0.76119	43.728	43.3	44.061	0					24	14	2	0	0	0	0.67483	1	15071	15071		20.454	6.5476	1	1285700			7627	1898	5404	5454	7422	7422					-0.05620020932656189
EAESHTLTY	9	Unmodified	_EAESHTLTY_					0	0	0		nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX;ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX;nc|ENSG00000088826|Q9NWM0-5|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	MULTI-SECPEP	A375_MHC_IP_R2	2	525.155517578125	2	525.740554	1049.46655	-0.37586	-0.0001976	3.3234	0.0017472	2.9475	0.0015496	526.7469198826686	42.855	0.86137	43.628	43.268	44.13	0.7724					36	16	3	0	0	0	0.50702	1	15885	15885		19.257	4.6753	1	2003800			7628	1898	5404	5454	7423	7423					-0.05620020932656189
EAETPFGRLI	10	Unmodified	_EAETPFGRLI_					0	0	0			REV__ENSG00000018699|ENST00000317907|TTC27	REV__ENSG00000018699|ENST00000317907|TTC27	MULTI-MSMS	A375_MHC_IP_R1	1	378.6045227050781	3	378.204751	1131.59242	0.0092584	3.5016E-06	0.15955	6.0342E-05	0.16881	6.3843E-05	378.2047648560812	30.326	1.2639	30.326	30.099	31.363	0					60	24	4	0	0	0	0.42123	1	9585	9585		32.898	5.8094	1	61312000	+		7629	16256	5405	5455	7424	7424					0.03189110643438653
EAETPFGRLI	10	Unmodified	_EAETPFGRLI_					0	0	0			REV__ENSG00000018699|ENST00000317907|TTC27	REV__ENSG00000018699|ENST00000317907|TTC27	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	378.204751	1131.59242	-0.34078	-0.00012888	0.4528	0.00017125	0.11202	4.2368E-05	378.20489063735965	29.689	1.1121	30.388	30.134	31.246	0.69872	0.030911	0.00018817	NaN	32.898	59	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56003000	+		7630	16256	5405	5455							0.03189110643438653
EAETYHYFCSY	11	Unmodified	_EAETYHYFCSY_					0	0	0			REV__nc|ENSG00000151445|Q9H9C1-2|VIPAS39	REV__nc|ENSG00000151445|Q9H9C1-2|VIPAS39	MULTI-SECPEP	A375_MHC_IP_R2	2	471.6794738769531	3	471.520299	1411.53907	-0.98919	-0.00046642	-1.6661	-0.00078562	-2.6553	-0.001252	471.52009536666236	33.49	0.25483	34.242	34.043	34.298	0.75225					5	4	2	0	0	0	0.99883	1	12001	12001		2.6312	0	1	863780	+		7631	19752	5406	5456	7425	7425					-0.15024054921377683
EAEVLVPDDV	10	Unmodified	_EAEVLVPDDV_					0	0	0			REV__nc|ENSG00000008735|Q13387-3|MAPK8IP2	REV__nc|ENSG00000008735|Q13387-3|MAPK8IP2	MULTI-MSMS	A375_MHC_IP_R1	1	543.6712036132812	2	543.271687	1084.52882	-0.11046	-6.0009E-05	-0.3134	-0.00017026	-0.42386	-0.00023027	543.271184293762	48.838	1.468	48.838	48.325	49.793	0					41	28	3	0	0	0	0.62155	1	17285	17285		19.257	0	1	5101000	+		7632	16178	5407	5457	7426	7426					-0.010062945843401394
EAEWEWKAGF	10	Unmodified	_EAEWEWKAGF_					0	0	0		ENST00000482958.1_1_3:165491172-165545790:-|nuORF;ENSG00000114200|ENST00000264381|BCHE	ENST00000482958.1_1_3:165491172-165545790:-|nuORF	ENST00000482958.1_1_3:165491172-165545790:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	418.2783203125	3	418.192623	1251.55604	-0.61156	-0.00025575	-0.93329	-0.00039029	-1.5448	-0.00064604	418.5269467676369	33.747	0.25179	34.499	34.298	34.55	0.75225					6	4	2	0	0	0	0.93406	1	12065	12065		6.1918	2.6048	1	574000			7633	3203	5408	5458	7427	7427					-0.05967766253297668
EAEWKQKTI	9	Unmodified	_EAEWKQKTI_					0	0	0			REV__ENSG00000160862|ENST00000292401|AZGP1	REV__ENSG00000160862|ENST00000292401|AZGP1	MULTI-SECPEP	A375_MHC_IP_R1	1	378.6046142578125	3	378.204751	1131.59242	0.0092584	3.5016E-06	0.15955	6.0342E-05	0.16881	6.3843E-05	378.2047648560812	30.326	1.2639	30.326	30.099	31.363	0					60	24	4	0	0	0	0.73926	1	9848	9848		12.873	12.873	1	61312000	+		7634	20186	5409	5459	7428	7428					0.031891106434159155
EAEWRAALES	10	Unmodified	_EAEWRAALES_					0	0	0			REV__nc|ENSG00000175764|Q8NHH1-2|TTLL11	REV__nc|ENSG00000175764|Q8NHH1-2|TTLL11	MULTI-MSMS	A375_MHC_IP_R1	1	581.679443359375	2	581.280377	1160.5462	-0.30532	-0.00017747	-0.63204	-0.00036739	-0.93736	-0.00054487	581.2800276252088	52.525	0.60989	52.525	52.336	52.946	0					21	11	3	0	0	0	0.57505	1	18708	18708		22.736	2.2827	1	4606800	+		7635	21365	5410	5460	7429	7429					-0.027649542586914322
EAFDFFKYLDA	11	Unmodified	_EAFDFFKYLDA_					0	0	0		ENSG00000129317|ENST00000344862|PUS7L	ENSG00000129317|ENST00000344862|PUS7L	ENSG00000129317|ENST00000344862|PUS7L	MULTI-SECPEP	A375_MHC_IP_R2	2	456.1174011230469	3	455.883566	1364.62887	-0.62988	-0.00028715	0.043388	1.978E-05	-0.58649	-0.00026737	456.2186670944352	36.596	0.40729	37.367	37.207	37.615	0.7709					11	7	2	0	0	0	0.99738	1	13414	13414		1.1098	0	1	1971000			7636	4187	5411	5461	7430	7430					-0.03886057250520025
EAFGISAFSL	10	Unmodified	_EAFGISAFSL_					0	0	0		OGFOD3|p.S201F|1|0.31|ENSG00000181396|chr17:82404034-82404034|G/A|missense_variant	OGFOD3|p.S201F|1|0.31|ENSG00000181396|chr17:82404034-82404034|G/A|missense_variant	OGFOD3|p.S201F|1|0.31|ENSG00000181396|chr17:82404034-82404034|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	521.6661376953125	2	521.266207	1040.51786	-0.31957	-0.00016658	-0.33848	-0.00017644	-0.65805	-0.00034302	521.2659428471237	78.677	0.6084	78.677	78.352	78.96	0					21	11	3	0	0	0	0.33054	1	28709	28709		39.95	6.5048	1	3214700			7637	15047	5412	5462	7431	7431					-0.0007765216794268781
EAFGISAFSL	10	Unmodified	_EAFGISAFSL_					0	0	0		OGFOD3|p.S201F|1|0.31|ENSG00000181396|chr17:82404034-82404034|G/A|missense_variant	OGFOD3|p.S201F|1|0.31|ENSG00000181396|chr17:82404034-82404034|G/A|missense_variant	OGFOD3|p.S201F|1|0.31|ENSG00000181396|chr17:82404034-82404034|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	521.6658325195312	2	521.266207	1040.51786	-0.61682	-0.00032153	-0.41832	-0.00021806	-1.0351	-0.00053959	521.2659653431267	77.837	0.66162	78.58	78.165	78.827	0.74293					21	12	3	0	0	0	0.2347	1	29593	29593		45.7	9.5726	1	3073000			7638	15047	5412	5462	7432	7432					-0.0007765216794268781
EAFLGKPWS	9	Unmodified	_EAFLGKPWS_					0	0	0		ENST00000464874.1_1_7:105515663-105517004:-|nuORF;nc|ENSG00000146776|Q9ULK2-2|ATXN7L1;ENST00000481880.5_1_7:105428891-105517004:-|nuORF;ENSG00000146776|ENST00000419735|ATXN7L1	ENST00000464874.1_1_7:105515663-105517004:-|nuORF	ENST00000464874.1_1_7:105515663-105517004:-|nuORF	MSMS	A375_MHC_IP_R1	1	517.6800537109375	2	517.768917	1033.52328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.775	1	27.775	27.275	28.275	0								0	0	0	0.15486	1	8472	8472		13.042	1.4022	1				7639	5635	5413	5463	7433	7433					0.007860714144953818
EAFMEAGIY	9	Unmodified	_EAFMEAGIY_					0	0	0		nc|ENSG00000158079|A2A3K4|PTPDC1;nc|ENSG00000158079|A2A3K4-2|PTPDC1;ENSG00000158079|ENST00000620992|PTPDC1	nc|ENSG00000158079|A2A3K4|PTPDC1	nc|ENSG00000158079|A2A3K4|PTPDC1	MULTI-MSMS	A375_MHC_IP_R1	1	516.1614379882812	2	515.731143	1029.44773	-0.75439	-0.00038906	0.75633	0.00039006	0.0019398	1.0004E-06	515.7309894394191	90.751	1.1664	90.751	90.235	91.401	0					39	22	2	0	0	0	0.58047	1	33525	33525		15.847	2.3393	1	1130800			7640	6283	5414	5464	7434	7434					-0.065812738280556
EAFPISHI	8	Unmodified	_EAFPISHI_					0	0	0		ENSG00000121634|ENST00000369235|GJA8	ENSG00000121634|ENST00000369235|GJA8	ENSG00000121634|ENST00000369235|GJA8	MSMS	A375_MHC_IP_R1	1	457.15093994140625	2	457.242535	912.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.158	1	64.158	63.658	64.658	0								0	0	0	0.16876	1	23208	23208		30.225	3.3412	1				7641	3728	5415	5465	7435	7435					0.010781133517184571
EAFQGTKVF	9	Unmodified	_EAFQGTKVF_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	A375_MHC_IP_R1	1	514.16552734375	2	513.766374	1025.5182	-0.37446	-0.00019238	-2.306	-0.0011847	-2.6805	-0.0013771	513.7654009487507	56.439	0.55783	56.439	56.092	56.65	0					14	10	2	0	0	0	0.2415	1	20263	20263		34.932	2.6266	1	1784600			7642	4331	5416	5466	7436	7436					0.0064576755189591495
EAFTKTPCYHY	11	Unmodified	_EAFTKTPCYHY_					0	0	0		ENSG00000163481|ENST00000295704|RNF25	ENSG00000163481|ENST00000295704|RNF25	ENSG00000163481|ENST00000295704|RNF25	MSMS	A375_MHC_IP_R2	2	453.6361999511719	3	453.872784	1358.59652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.558	1	27.218	26.718	27.718	0.65992								0	0	0	0.16191	1	8988	8988		4.4062	0.52982	1				7643	6670	5417	5467	7437	7437					-0.06843167925171656
EAFWSQLPS	9	Unmodified	_EAFWSQLPS_					0	0	0			REV__nc|ENSG00000163378|Q5NDL2-3|EOGT	REV__nc|ENSG00000163378|Q5NDL2-3|EOGT	MSMS	A375_MHC_IP_R1	1	532.6871337890625	2	532.756007	1063.49746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.65	1	106.65	106.15	107.15	0								0	0	0	0.12472	1	39146	39146		34.402	1.616	1		+		7644	20355	5418	5468	7438	7438					-0.031748228277592716
EAGAALALAGL	11	Unmodified	_EAGAALALAGL_					0	0	0			REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	MULTI-MSMS	A375_MHC_IP_R1	1	479.3011779785156	2	478.7742	955.533846	-0.66778	-0.00031971	0.089347	4.2777E-05	-0.57843	-0.00027694	478.77422282161814	24.117	0.55654	24.117	23.991	24.547	0					17	10	3	0	0	0	0.56199	1	6742	6742		26.268	3.5319	1	33711000	+		7645	18837	5419	5469	7439	7439					0.054300540689382615
EAGAAVVVVAA	11	Unmodified	_EAGAAVVVVAA_					0	0	0		ENST00000262367.9_1_16:3776424-3776553:-|nuORF	ENST00000262367.9_1_16:3776424-3776553:-|nuORF	ENST00000262367.9_1_16:3776424-3776553:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	479.3009948730469	2	478.7742	955.533846	-0.8508	-0.00040734	0.030506	1.4605E-05	-0.8203	-0.00039274	478.77422931058715	23.425	0.40439	24.055	23.878	24.283	0.63014					18	7	4	0	0	0	0.62292	1	7510	7510		21.537	2.28	1	24383000			7646	10298	5420	5470	7440	7440					0.054300540689382615
EAGADQEHKT	10	Unmodified	_EAGADQEHKT_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;nc|ENSG00000131503|Q8IWZ3-5|ANKHD1;nc|ENSG00000131503|Q8IWZ3-3|ANKHD1;nc|ENSG00000131503|Q8IWZ3-2|ANKHD1;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-5|ANKRD17;ANKRD17|p.Q529Rfs*10|1|0.07|ENSG00000132466|chr4:73147415-73147415|G/-|frameshift_variant	ENSG00000131503|ENST00000360839|ANKHD1;ENSG00000132466|ENST00000358602|ANKRD17	ENSG00000132466|ENST00000358602|ANKRD17	MSMS	A375_MHC_IP_R1	1	543.1453857421875	2	543.246535	1084.47852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.767	1	71.767	71.267	72.267	0								0	0	0	0.14741	1	26088	26088		22.736	6.8891	1				7647	4411;4336	5421	5471	7441	7441					-0.06034404189472298
EAGASVHLTAH	11	Unmodified	_EAGASVHLTAH_					0	0	0			REV__ENST00000540866.2_1_12:123464648-123464873:+|nuORF	REV__ENST00000540866.2_1_12:123464648-123464873:+|nuORF	MSMS	A375_MHC_IP_R2	2	546.6715087890625	2	546.775262	1091.53597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.972	1	23.602	23.102	24.102	0.63014								0	0	0	0.14647	1	7333	7333		22.736	6.8891	1		+		7648	25955	5422	5472	7442	7442					-0.00613517193255575
EAGDVDEGPV	10	Unmodified	_EAGDVDEGPV_					0	0	0		ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	MSMS	A375_MHC_IP_R1	1	494.1873779296875	2	494.216911	986.41927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.871	1	69.871	69.371	70.371	0								0	0	0	0.15308	1	25360	25360		10.824	1.4765	1				7649	2548	5423	5473	7443	7443					-0.07448300203657254
EAGEGTAPFAH	11	Unmodified	_EAGEGTAPFAH_					0	0	0		tr|U7SH34|U7SH34_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02311PE=3SV=1	tr|U7SH34|U7SH34_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02311PE=3SV=1	tr|U7SH34|U7SH34_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02311PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	544.1921997070312	2	543.74617	1085.47779	-0.87246	-0.0004744	-0.65988	-0.00035881	-1.5323	-0.0008332	544.2471529295575	70.845	0.40337	71.579	71.302	71.706	0.73421					13	7	2	0	0	0	0.9754	1	26840	26840		17.113	17.113	1	3279800			7650	29415	5424	5474	7444	7444					-0.061531988385240766
EAGFHQYEV	9	Unmodified	_EAGFHQYEV_					0	0	0		ENSG00000136444|ENST00000258955|RSAD1;nc|ENSG00000136444|Q9HA92-2|RSAD1;RSAD1|p.L264V|1|0.82|ENSG00000136444|chr17:50482406-50482406|C/G|missense_variant;RSAD1|p.L264F|1|0.19|ENSG00000136444|chr17:50482406-50482406|C/T|missense_variant;ENST00000509398.1_1_17:48559742-48559889:+|nuORF	ENSG00000136444|ENST00000258955|RSAD1	ENSG00000136444|ENST00000258955|RSAD1	MULTI-SECPEP	A375_MHC_IP_R1	1	540.671875	2	540.243264	1078.47197	-0.13887	-7.5025E-05	0.28871	0.00015597	0.14983	8.0947E-05	540.2430944486398	44.702	0.55927	44.702	44.42	44.98	0					15	10	2	0	0	0	0.65246	1	15695	15695		3.5965	0	1	1398300			7651	4788	5425	5475	7445	7445					-0.06412297350175322
EAGGDEQP	8	Unmodified	_EAGGDEQP_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R2	2	802.1536865234375	1	802.321353	801.314077	-0.97523	-0.00078245	2.3444	0.0018809	1.3691	0.0010985	802.321899497056	128.64	0.20123	128.88	128.76	128.96	0.23946					5	3	2	0	0	0	0.77717	1	50499	50499		5.2307	0	1	4902200	+		7652	19932	5426	5476	7446	7446					-0.09452796609411962
EAGGDNLGQQY	11	Unmodified	_EAGGDNLGQQY_					0	0	0		nc|ENSG00000114491|P11172-2|UMPS;nc|ENSG00000114491|P11172-3|UMPS;ENSG00000114491|ENST00000232607|UMPS	nc|ENSG00000114491|P11172-2|UMPS	nc|ENSG00000114491|P11172-2|UMPS	MULTI-MSMS	A375_MHC_IP_R1	1	576.6520385742188	2	576.251817	1150.48908	-0.19065	-0.00010986	1.1899	0.00068569	0.99926	0.00057582	576.2524620315681	57.867	0.5081	57.867	57.618	58.126	0					20	9	3	0	0	0	0.45155	1	20761	20761		34.932	9.5328	1	2940700			7653	3225	5427	5477	7447	7447					-0.08014421535040128
EAGKWYCCL	9	Unmodified	_EAGKWYCCL_					0	0	0		ENST00000596899.1_19:22000772-22034792:-|nuORF	ENST00000596899.1_19:22000772-22034792:-|nuORF	ENST00000596899.1_19:22000772-22034792:-|nuORF	MSMS	A375_MHC_IP_R2	2	536.6923828125	2	536.733163	1071.45177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.093	1	52.846	52.346	53.346	0.75225								0	0	0	0.15486	1	19626	19626		12.532	3.1841	1				7654	13842	5428	5478	7448	7448					-0.08109507606013722
EAGNGLPSWKF	11	Unmodified	_EAGNGLPSWKF_					0	0	0		ENSG00000151612|ENST00000508784|ZNF827;nc|ENSG00000151612|Q17R98-2|ZNF827;nc|ENSG00000151612|Q17R98-3|ZNF827	ENSG00000151612|ENST00000508784|ZNF827	ENSG00000151612|ENST00000508784|ZNF827	MULTI-SECPEP	A375_MHC_IP_R1	1	403.2562561035156	3	402.536501	1204.58767	-0.35059	-0.00014112	4.4734	0.0018007	4.1228	0.0016596	402.53780166939157	28.415	0.15206	28.415	28.339	28.491	0					4	2	2	0	0	0	0.99018	1	8796	8796		0.92553	0	1	489870			7655	5915	5429	5479	7449	7449					-0.006437734993596678
EAGQFYLSGSY	11	Unmodified	_EAGQFYLSGSY_					0	0	0			REV__ENSG00000034971|ENST00000037502|MYOC	REV__ENSG00000034971|ENST00000037502|MYOC	MULTI-MSMS	A375_MHC_IP_R1	1	611.2553100585938	2	611.274761	1220.53497	-0.20533	-0.00012551	0.14088	8.6114E-05	-0.064453	-3.9398E-05	611.2746354711288	70.427	0.35992	70.427	70.185	70.545	0					10	6	2	0	0	0	0.67989	1	25525	25525		17.113	7.7298	1	1036300	+		7656	16314	5430	5480	7450	7450					-0.06647776352792789
EAGQFYLSGSY	11	Unmodified	_EAGQFYLSGSY_					0	0	0			REV__ENSG00000034971|ENST00000037502|MYOC	REV__ENSG00000034971|ENST00000037502|MYOC	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	611.274761	1220.53497	-0.20533	-0.00012551	0.14088	8.6114E-05	-0.064453	-3.9398E-05	611.2746354711288	70.427	0.35992	70.427	70.185	70.545	0	-0.069396	5.404E-05	NaN	17.113	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1036300	+		7657	16314	5430	5480							-0.06647776352792789
EAGQFYLSGSY	11	Unmodified	_EAGQFYLSGSY_					0	0	0			REV__ENSG00000034971|ENST00000037502|MYOC	REV__ENSG00000034971|ENST00000037502|MYOC	MULTI-MATCH	A375_MHC_IP_R2	2		2	611.274761	1220.53497	-0.42819	-0.00026174	0.075229	4.5986E-05	-0.35296	-0.00021576	611.2748319141008	69.832	0.45887	70.566	70.284	70.743	0.73421	0.069396	-2.6217E-05	NaN	17.113	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1494800	+		7658	16314	5430	5480							-0.06647776352792789
EAGSDMVFW	9	Unmodified	_EAGSDMVFW_					0	0	0		ENST00000472413.5_1_16:15016937-15019904:+|nuORF;ENST00000534164.5_1_16:15014190-15019904:+|nuORF	ENST00000472413.5_1_16:15016937-15019904:+|nuORF	ENST00000472413.5_1_16:15016937-15019904:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	520.6636962890625	2	521.220943	1040.42733	-0.77861	-0.00040583	1.5222	0.00079338	0.74355	0.00038756	521.2216400932606	65.679	0.4566	66.417	66.018	66.475	0.73811					12	8	2	0	0	0	0.78348	1	24776	24776		4.3292	0.73274	1	851680			7659	12372	5431	5481	7451	7451					-0.09126444487856133
EAGSEDYQPH	10	Unmodified	_EAGSEDYQPH_					0	0	0		ENST00000468845.1_1_1:153945363-153946538:+|nuORF;nc|ENSG00000143578|Q8TEY5-2|CREB3L4;ENSG00000143578|ENST00000368607|CREB3L4	ENST00000468845.1_1_1:153945363-153946538:+|nuORF	ENST00000468845.1_1_1:153945363-153946538:+|nuORF	MSMS	A375_MHC_IP_R2	2	566.6600341796875	2	566.730717	1131.44688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.901	1	64.642	64.142	65.142	0.74022								0	0	0	0.15158	1	24232	24232		14.838	1.3304	1				7660	5411	5432	5482	7452	7452					-0.11358396943433036
EAGWDFRRV	9	Unmodified	_EAGWDFRRV_					0	0	0			REV__ENST00000495397.1_1_1:161696362-161697449:+|nuORF	REV__ENST00000495397.1_1_1:161696362-161697449:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	568.2167358398438	2	568.285797	1134.55704	-0.30436	-0.00017297	-1.0106	-0.00057431	-1.315	-0.00074727	568.2852587983352	52.143	0.81451	52.143	51.879	52.694	0					21	15	2	0	0	0	0.58047	1	18724	18724		15.847	1.0089	1	4035600	+		7661	20302	5433	5483	7453	7453					-0.004855070937310302
EAHEGLYF	8	Unmodified	_EAHEGLYF_					0	0	0		ENSG00000170927|ENST00000371117|PKHD1;nc|ENSG00000170927|P08F94-2|PKHD1;PKHD1|p.E108K|1|0.33|ENSG00000170927|chr6:52079968-52079968|C/T|missense_variant	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	MULTI-MSMS	A375_MHC_IP_R1	1	483.6215515136719	2	483.2218	964.429047	-0.37408	-0.00018076	-0.052801	-2.5515E-05	-0.42688	-0.00020628	483.2216843465793	47.237	0.81713	47.237	46.901	47.718	0					26	15	2	0	0	0	0.70179	1	16573	16573		34.187	2.0704	1	7459400			7662	7561	5434	5484	7454	7454					-0.054590674076280266
EAHEGLYF	8	Unmodified	_EAHEGLYF_					0	0	0		ENSG00000170927|ENST00000371117|PKHD1;nc|ENSG00000170927|P08F94-2|PKHD1;PKHD1|p.E108K|1|0.33|ENSG00000170927|chr6:52079968-52079968|C/T|missense_variant	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	MULTI-MSMS	A375_MHC_IP_R2	2	483.62139892578125	2	483.2218	964.429047	-0.47621	-0.00023012	-1.099	-0.00053108	-1.5752	-0.00076119	483.22171205636005	46.431	0.91314	47.196	46.654	47.567	0.76518					50	17	4	0	0	0	0.70179	1	17351	17351		34.187	9.5134	1	6388800			7663	7561	5434	5484	7455	7455					-0.054590674076280266
EAHFLFFF	8	Unmodified	_EAHFLFFF_					0	0	0		ENST00000466883.5_1_7:65440836-65441142:-|nuORF	ENST00000466883.5_1_7:65440836-65441142:-|nuORF	ENST00000466883.5_1_7:65440836-65441142:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	529.3810424804688	2	529.260728	1056.5069	-0.72853	-0.00038558	0.42324	0.000224	-0.30529	-0.00016158	529.2608620069958	86.605	0.60725	86.605	86.325	86.933	0					32	11	3	0	0	0	0.77123	1	31689	31689		14.582	14.582	1	14064000			7664	12266	5435	5485	7456	7456					-0.019090097515800153
EAHHFCFGLS	10	Unmodified	_EAHHFCFGLS_					0	0	0			REV__ENST00000513517.1_1_4:123818758-123838869:-|nuORF	REV__ENST00000513517.1_1_4:123818758-123838869:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	383.5711975097656	3	383.171164	1146.49166	-0.35757	-0.00013701	0.25324	9.7035E-05	-0.10433	-3.9976E-05	383.1711998488799	41.145	0.55678	41.92	41.692	42.249	0.77451					18	10	3	0	0	0	0.91909	1	15263	15263		5.4027	0	1	5890800	+		7665	21032	5436	5486	7457	7457					-0.07572244611083079
EAHHIRFK	8	Unmodified	_EAHHIRFK_					0	0	0		ENSG00000120071|ENST00000432791|KANSL1;KANSL1|p.S839Nfs*6|1|0.6|ENSG00000120071|chr17:46038542-46038563|GTGCTGGCTGTAACCTGTGAGC/-|frameshift_variant	ENSG00000120071|ENST00000432791|KANSL1	ENSG00000120071|ENST00000432791|KANSL1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.6373291015625	2	519.2856	1036.55665	-0.65311	-0.00033915	-1.3731	-0.00071306	-2.0263	-0.0010522	519.284844345673	44.394	0.40557	45.163	44.934	45.34	0.7691					12	7	2	0	0	0	0.972	1	16479	16479		4.756	0.81161	1	1461700			7666	3649	5437	5487	7458	7458					0.039831179770771996
EAHKKGYWKMW	11	Unmodified	_EAHKKGYWKMW_					0	0	0			REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L	REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L	MSMS	A375_MHC_IP_R1	1	488.6443786621094	3	488.579935	1462.71798	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.293	1	23.293	22.793	23.793	0								0	0	0	0.16316	1	6370	6370		2.2527	0	1		+		7667	27157	5438	5488	7459	7459					0.005124992279888829
EAHTSLSLY	9	Unmodified	_EAHTSLSLY_					0	0	0			REV__ENST00000507765.1_1_4:6290695-6304192:+|nuORF	REV__ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	511.1895446777344	2	510.753464	1019.49238	-0.22462	-0.00011473	-0.51722	-0.00026417	-0.74185	-0.0003789	510.7531883511139	42.829	0.50749	42.829	42.587	43.095	0					22	9	3	0	0	0	0.2264	1	14787	14787		36.044	5.4077	1	6322500	+		7668	17581	5439	5489	7460	7460					-0.016591266903674295
EAHVNLAQGY	10	Unmodified	_EAHVNLAQGY_					0	0	0		nc|ENSG00000103852|Q5W5X9-2|TTC23;nc|ENSG00000103852|Q5W5X9-3|TTC23;ENSG00000103852|ENST00000394132|TTC23;ENST00000494567.1_1_15:99759074-99762030:-|nuORF	nc|ENSG00000103852|Q5W5X9-2|TTC23	nc|ENSG00000103852|Q5W5X9-2|TTC23	MULTI-MSMS	A375_MHC_IP_R2	2	551.6691284179688	2	551.269813	1100.52507	-1.0565	-0.00058241	0.70042	0.00038612	-0.35607	-0.00019629	551.2697958944568	23.677	0.40507	24.308	24.029	24.435	0.63014					11	7	3	0	0	0	0.39599	1	7697	7697		34.402	1.616	1	3536800			7669	2471	5440	5490	7461	7461					-0.021169195675156516
EAIKLLENV	9	Unmodified	_EAIKLLENV_					0	0	0		tr|U7SRU2|U7SRU2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01428PE=4SV=1	tr|U7SRU2|U7SRU2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01428PE=4SV=1	tr|U7SRU2|U7SRU2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01428PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	515.19091796875	2	514.802957	1027.59136	-0.35268	-0.00018156	0.16699	8.5965E-05	-0.1857	-9.5597E-05	514.8029016069497	78.934	0.76355	78.934	78.707	79.47	0					28	14	3	0	0	0	0.036758	1	28841	28841		89.401	9.8044	1	11288000			7670	29619	5441	5491	7462	7462					0.0786689627452688
EAIKRSYII	9	Unmodified	_EAIKRSYII_					0	0	0		ENSG00000162402|ENST00000294383|USP24;USP24|p.K1184Mfs*22|1|0.08|ENSG00000162402|chr1:55129543-55129561|TCAGCTGTTGGCATGAGTT/-|frameshift_variant	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	A375_MHC_IP_R1	1	365.2854919433594	3	364.885241	1091.63389	0.38013	0.0001387	0.2053	7.491E-05	0.58542	0.00021361	364.88529913313874	51.783	0.45917	51.783	51.575	52.034	0					18	8	3	0	0	0	0.4867	1	18404	18404		14.405	0	1	2865800			7671	6526	5442	5492	7463	7463					0.09174291402769086
EAILQSELK	9	Unmodified	_EAILQSELK_					0	0	0		ENST00000466055.1_1_7:120789673-120901724:+|nuORF;nc|ENSG00000106034|A4D0V7-2|CPED1;ENSG00000106034|ENST00000310396|CPED1	ENST00000466055.1_1_7:120789673-120901724:+|nuORF	ENST00000466055.1_1_7:120789673-120901724:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	516.1923828125	2	515.792589	1029.57063	-0.56817	-0.00029306	-3.219	-0.0016603	-3.7871	-0.0019534	515.7922505845123	46.953	0.71263	47.714	47.309	48.022	0.76128					39	13	4	0	0	0	0.13208	1	17632	17632		66.457	0	1	6040400			7672	2663	5443	5493	7464	7464					0.05702305894828896
EAINDDLSF	9	Unmodified	_EAINDDLSF_					0	0	0			REV__tr|U7T0D3|U7T0D3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00938PE=4SV=1	REV__tr|U7T0D3|U7T0D3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00938PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	512.634765625	2	512.235104	1022.45566	-0.7947	-0.00040707	-0.24807	-0.00012707	-1.0428	-0.00053414	512.235104694968	39.587	0.50866	40.362	40.067	40.575	0.77451					15	9	2	0	0	0	0.63327	1	14653	14653		18.146	3.3081	1	2255500	+		7673	28675	5444	5494	7465	7465					-0.05467423306947694
EAIRQCEEKDY	11	Unmodified	_EAIRQCEEKDY_					0	0	0			REV__ENST00000537725.1_1_12:2070525-2113588:-|nuORF	REV__ENST00000537725.1_1_12:2070525-2113588:-|nuORF	MSMS	A375_MHC_IP_R1	1	692.4171752929688	2	692.314091	1382.61363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.933	1	81.933	81.433	82.433	0								0	0	0	0.16249	1	29949	29949		5.7319	0.43497	1		+		7674	19738	5445	5495	7466	7466					-0.062372921100177336
EAIRSLVNGL	10	Unmodified	_EAIRSLVNGL_					0	0	0			REV__ENSG00000184459|ENST00000300399|BPIFC	REV__ENSG00000184459|ENST00000300399|BPIFC	MULTI-SECPEP	A375_MHC_IP_R2	2	535.6829223632812	2	536.31148	1070.60841	-1.1042	-0.00059221	1.5712	0.00084264	0.46695	0.00025043	536.3116841359996	72.06	0.91108	72.795	72.314	73.225	0.73421					25	17	2	0	0	0	0.93961	1	27202	27202		3.2813	1.9518	1	2060000	+		7675	21821	5446	5496	7467	7467					0.07592816880332975
EAISGQHGRC	10	Unmodified	_EAISGQHGRC_					0	0	0		ENST00000463284.2_1_7:22852718-22862419:-|nuORF	ENST00000463284.2_1_7:22852718-22862419:-|nuORF	ENST00000463284.2_1_7:22852718-22862419:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	529.6474609375	2	529.245815	1056.47708	-0.54875	-0.00029042	0.25234	0.00013355	-0.29641	-0.00015687	529.2458979704817	73.365	2.0274	73.365	72.321	74.349	0					96	39	4	0	0	0	0.6502	1	26586	26586		17.113	3.605	1	22731000			7676	12210	5447	5497	7468	7468					-0.048903167592243335
EAISMETLEV	10	Unmodified	_EAISMETLEV_					0	0	0		nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4	nc|ENSG00000128815|Q6ZS81-5|WDFY4	nc|ENSG00000128815|Q6ZS81-5|WDFY4	MULTI-MSMS	A375_MHC_IP_R1	1	561.1867065429688	2	561.273372	1120.53219	-0.53124	-0.00029817	0.47132	0.00026454	-0.059918	-3.363E-05	561.2738265720886	40.188	0.81489	40.188	39.744	40.559	0					27	15	3	0	0	0	0.36703	1	13837	13837		36.127	4.8587	1	4533500			7677	4164	5448	5498	7469	7469					-0.023253678019500512
EAISSELHGS	10	Unmodified	_EAISSELHGS_					0	0	0			REV__nc|nan|Q8ND61-2|C3orf20	REV__nc|nan|Q8ND61-2|C3orf20	MULTI-MSMS	A375_MHC_IP_R1	1	516.1458129882812	2	515.246003	1028.47745	-0.38783	-0.00019983	-1.0251	-0.00052817	-1.4129	-0.000728	515.7461163401988	43.388	1.1687	43.388	42.841	44.01	0					50	22	4	0	0	0	0.62155	1	14987	14987		19.257	1.1106	1	6043200	+		7678	18599	5449	5499	7470	7470					-0.035646185583800616
EAIWADDVD	9	Unmodified	_EAIWADDVD_					0	0	0		nc|ENSG00000143627|P30613-2|PKLR;ENSG00000143627|ENST00000342741|PKLR	nc|ENSG00000143627|P30613-2|PKLR	nc|ENSG00000143627|P30613-2|PKLR	MULTI-MSMS	A375_MHC_IP_R1	1	517.627685546875	2	517.227279	1032.44001	-0.46878	-0.00024247	1.0269	0.00053112	0.55808	0.00028866	517.2278412186791	33.673	0.50425	33.673	33.547	34.052	0					13	9	2	0	0	0	0.69674	1	11116	11116		7.2892	1.0834	1	2694800			7679	5417	5450	5500	7471	7471					-0.07491709823989368
EAKAPVRGDEA	11	Unmodified	_EAKAPVRGDEA_					0	0	0		ENSG00000125089|ENST00000245105|SH3TC1	ENSG00000125089|ENST00000245105|SH3TC1	ENSG00000125089|ENST00000245105|SH3TC1	MULTI-SECPEP	A375_MHC_IP_R1	1	381.6253967285156	3	381.531527	1141.57275	0.36315	0.00013855	0.46647	0.00017797	0.82963	0.00031653	381.53176750303163	28.415	0.707	28.415	28.138	28.845	0					18	13	2	0	0	0	0.98673	1	8705	8705		5.5233	0	1	2372000			7680	3940	5451	5501	7472	7472					0.007627346326898987
EAKEKKYQYI	10	Unmodified	_EAKEKKYQYI_					0	0	0			REV__ANKRD30A|p.E1388K|1|0.33|ENSG00000148513|chr10:37219874-37219874|G/A|missense_variant	REV__ANKRD30A|p.E1388K|1|0.33|ENSG00000148513|chr10:37219874-37219874|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	433.9601745605469	3	433.902961	1298.68705	-0.18694	-8.1112E-05	-0.21889	-9.4979E-05	-0.40583	-0.00017609	433.90304612490144	34.716	0.25232	34.716	34.507	34.759	0					8	4	2	0	0	0	0.94269	1	11402	11402		1.5923	1.4524	1	1935000	+		7681	15407	5452	5502	7473	7473					0.04965624394776569
EAKESEYTV	9	Unmodified	_EAKESEYTV_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-SECPEP	A375_MHC_IP_R1	1	527.6116943359375	2	528.248212	1054.48187	-0.88405	-0.000467	0.44771	0.0002365	-0.43634	-0.0002305	528.2484336527201	41.378	0.25523	41.378	41.215	41.47	0					6	4	2	0	0	0	0.55359	1	14273	14273		21.747	0	1	1069300	+		7682	22333	5453	5503	7474	7474					-0.04319154135487224
EAKIICKTF	9	Unmodified	_EAKIICKTF_					0	0	0		nc|ENSG00000289604|P0CG41|CTAGE8;nc|ENSG00000288784|Q8IX94|CTAGE4;ENSG00000271321|ENST00000470691|CTAGE6;ENSG00000271079|ENST00000420911|CTAGE15;ENSG00000236761|ENST00000314099|CTAGE9	nc|ENSG00000289604|P0CG41|CTAGE8	nc|ENSG00000289604|P0CG41|CTAGE8	MULTI-SECPEP	A375_MHC_IP_R2	2	527.0784301757812	2	526.794078	1051.5736	-0.71203	-0.00037509	-0.09582	-5.0477E-05	-0.80785	-0.00042557	526.7941089658956	36.461	0.55983	37.232	36.901	37.461	0.7709					12	10	2	0	0	0	0.69507	1	13208	13208		2.9952	0	1	1773900			7683	9754	5454	5504	7475	7475					0.049878577480058084
EAKKLELSY	9	Unmodified	_EAKKLELSY_					0	0	0			REV__nc|ENSG00000123843|P20851-2|C4BPB	REV__nc|ENSG00000123843|P20851-2|C4BPB	MULTI-SECPEP	A375_MHC_IP_R2	2	540.1744995117188	2	540.800414	1079.58628	-0.66789	-0.00036119	-0.39794	-0.00021521	-1.0658	-0.0005764	540.8003228193704	47.303	0.35677	48.065	47.919	48.275	0.76128					9	6	2	0	0	0	0.73363	1	17778	17778		15.847	5.0233	1	1306100	+		7684	18261	5455	5505	7476	7476					0.04966592411892634
EAKKQSKQQM	10	Unmodified	_EAKKQSKQQM_					0	0	0			REV__nc|ENSG00000116161|Q9HB71-2|CACYBP	REV__nc|ENSG00000116161|Q9HB71-2|CACYBP	MULTI-MSMS	A375_MHC_IP_R2	2	402.9400939941406	3	402.548412	1204.62341	-0.37227	-0.00014986	-2.0712	-0.00083376	-2.4435	-0.00098361	402.54785668001125	26.338	0.8147	26.998	26.805	27.62	0.65992					28	15	4	0	0	0	0.70741	1	8926	8926		8.9762	1.8745	1	2936100	+		7685	17943	5456	5506	7477	7477					0.02927940686004149
EAKKRHSQFQ	10	Unmodified	_EAKKRHSQFQ_					0	0	0			REV__ENST00000366987.6_2_1:212793496-212793775:+|nuORF	REV__ENST00000366987.6_2_1:212793496-212793775:+|nuORF	MSMS	A375_MHC_IP_R1	1	629.833984375	2	629.836185	1257.65782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.013	1	30.013	29.513	30.513	0								0	0	0	0.15158	1	9480	9480		14.838	4.7643	1		+		7686	23948	5457	5507	7478	7478					0.03929524889122149
EAKLMEECD	9	Unmodified	_EAKLMEECD_					0	0	0		nc|ENSG00000080561|Q9UJV3-2|MID2;ENSG00000080561|ENST00000262843|MID2	nc|ENSG00000080561|Q9UJV3-2|MID2	nc|ENSG00000080561|Q9UJV3-2|MID2	MULTI-MSMS	A375_MHC_IP_R1	1	534.6226196289062	2	534.222825	1066.4311	-0.59012	-0.00031525	-0.3313	-0.00017699	-0.92141	-0.00049224	534.2226842374914	72.842	0.55749	72.842	72.575	73.132	0					16	10	2	0	0	0	0.69674	1	26526	26526		7.2892	2.96	1	2000600			7687	1716	5458	5508	7479	7479					-0.09946142776334455
EAKLMEECD	9	Unmodified	_EAKLMEECD_					0	0	0		nc|ENSG00000080561|Q9UJV3-2|MID2;ENSG00000080561|ENST00000262843|MID2	nc|ENSG00000080561|Q9UJV3-2|MID2	nc|ENSG00000080561|Q9UJV3-2|MID2	MULTI-MSMS	A375_MHC_IP_R2	2	534.6605834960938	2	534.222825	1066.4311	-1.0071	-0.000538	-0.56126	-0.00029984	-1.5683	-0.00083784	534.2223884380401	72.112	0.45435	72.846	72.567	73.021	0.73421					15	8	2	0	0	0	0.64808	2	27326	27326;27377		11.64	4.9171	1	1577800			7688	1716	5458	5508	7480;7481	7480					-0.09946142776334455
EAKLNEEY	8	Unmodified	_EAKLNEEY_					0	0	0			REV__nc|ENSG00000181381|Q5H9U9-2|DDX60L	REV__nc|ENSG00000181381|Q5H9U9-2|DDX60L	MSMS	A375_MHC_IP_R2	2	498.17547607421875	2	498.237647	994.460741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.39	1	79.135	78.635	79.635	0.74474								0	0	0	0.16876	1	29767	29767		13.508	0	1		+		7689	15981	5459	5509	7482	7482					-0.03671119444334181
EAKMVLTD	8	Unmodified	_EAKMVLTD_					0	0	0			REV__TENM2|p.T1011A|1|0.34|ENSG00000145934|chr5:168198983-168198983|A/G|missense_variant	REV__TENM2|p.T1011A|1|0.34|ENSG00000145934|chr5:168198983-168198983|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	453.1311950683594	2	453.733686	905.452819	-0.67903	-0.0003081	-1.506	-0.00068334	-2.1851	-0.00099144	453.7337237081135	28.441	0.25393	29.12	28.96	29.214	0.67857					6	4	2	0	0	0	0.91495	1	9832	9832		12.532	0.89125	1	1909400	+		7690	28092	5460	5510	7483	7483					-0.003689699654614742
EAKNAVLDW	9	Unmodified	_EAKNAVLDW_					0	0	0			REV__ENST00000404802.7_1_22:37419824-37419929:+|nuORF	REV__ENST00000404802.7_1_22:37419824-37419929:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	522.6854248046875	2	523.269281	1044.52401	-0.90729	-0.00047476	-0.062977	-3.2954E-05	-0.97027	-0.00050771	523.2688752241099	56.437	0.35711	57.188	57.051	57.408	0.75014					8	6	2	0	0	0	0.76187	1	21314	21314		3.9444	3.9444	1	730450	+		7691	24430	5461	5511	7484	7484					0.003528660635538472
EAKNLGTLGGY	11	Unmodified	_EAKNLGTLGGY_					0	0	0			REV__ENSG00000171314|ENST00000334828|PGAM1;REV__ENSG00000226784|ENST00000458128|PGAM4;REV__nc|ENSG00000164708|P15259|PGAM2	REV__nc|ENSG00000164708|P15259|PGAM2	MULTI-MSMS	A375_MHC_IP_R1	1	375.2575378417969	3	374.864506	1121.57169	0.19624	7.3562E-05	-0.31941	-0.00011974	-0.12318	-4.6174E-05	374.8644216687674	47.037	0.30762	47.037	46.799	47.107	0					6	5	2	0	0	0	0.68072	1	16552	16552		17.049	2.0914	1	599360	+		7692	27328;22726;21059	5462	5512	7485	7485					0.015765202637794573
EAKPRLQKL	9	Unmodified	_EAKPRLQKL_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000484220.1_1_22:21119034-21147510:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	A375_MHC_IP_R2	2	362.2816467285156	3	361.560869	1081.66078	-0.15972	-5.7749E-05	-0.11631	-4.2055E-05	-0.27604	-9.9804E-05	361.56079914701326	27.712	0.76068	28.391	27.843	28.604	0.67857					31	14	3	0	0	0	0.57432	1	9430	9430		16.149	1.7437	1	5440400			7693	9791	5463	5513	7486	7486					0.1232140001393418
EAKQQLEYA	9	Unmodified	_EAKQQLEYA_					0	0	0		ENSG00000173578|ENST00000309285|XCR1	ENSG00000173578|ENST00000309285|XCR1	ENSG00000173578|ENST00000309285|XCR1	MSMS	A375_MHC_IP_R2	2	540.1747436523438	2	540.272021	1078.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.217	1	31.936	31.436	32.436	0.71857								0	0	0	0.15069	1	11027	11027		20.454	0.039092	1				7694	7812	5464	5514	7487	7487					-0.0066345514460408594
EAKRQKWY	8	Unmodified	_EAKRQKWY_					0	0	0		ENST00000355624.7_1_10:119805573-119805648:-|nuORF	ENST00000355624.7_1_10:119805573-119805648:-|nuORF	ENST00000355624.7_1_10:119805573-119805648:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	555.1981201171875	2	554.79854	1107.58253	-0.65096	-0.00036115	0.0030891	1.7138E-06	-0.64787	-0.00035944	554.7983819167872	28.841	0.55672	28.841	28.541	29.098	0					16	10	2	0	0	0	0.77603	1	8978	8978		9.3474	0.60203	1	2137200			7695	10953	5465	5515	7488	7488					0.03303967428701071
EAKRQKWY	8	Unmodified	_EAKRQKWY_					0	0	0		ENST00000355624.7_1_10:119805573-119805648:-|nuORF	ENST00000355624.7_1_10:119805573-119805648:-|nuORF	ENST00000355624.7_1_10:119805573-119805648:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	554.79854	1107.58253	-0.65096	-0.00036115	0.0030891	1.7138E-06	-0.64787	-0.00035944	554.7983819167872	28.841	0.55672	28.841	28.541	29.098	0	0.015091	5.4163E-05	NaN	9.3474	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2137200			7696	10953	5465	5515							0.03303967428701071
EAKRYKIY	8	Unmodified	_EAKRYKIY_					0	0	0		ENSG00000080200|ENST00000389622|CRYBG3;nc|ENSG00000080200|Q68DQ2-1|CRYBG3;CRYBG3|p.S2072L|1|0.2|ENSG00000080200|chr3:97877409-97877409|C/T|missense_variant	ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	MULTI-SECPEP	A375_MHC_IP_R1	1	357.2500305175781	3	357.537953	1069.59203	-0.062034	-2.218E-05	2.6459	0.000946	2.5838	0.00092382	357.5388912247077	33.099	0.55673	33.099	32.785	33.342	0					12	10	2	0	0	0	0.972	1	10801	10801		3.9444	0	1	1619500			7697	1709	5466	5516	7489	7489					0.06001735714221468
EAKSGQDQLS	10	Unmodified	_EAKSGQDQLS_					0	0	0			REV__ENST00000527306.1_1_8:42752256-42852891:+|nuORF	REV__ENST00000527306.1_1_8:42752256-42852891:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	532.1561889648438	2	531.756735	1061.49892	-0.68161	-0.00036245	-0.081864	-4.3532E-05	-0.76348	-0.00040598	531.7567378953365	89.842	0.60693	89.842	89.526	90.133	0					19	11	2	0	0	0	0.67512	1	33031	33031		15.248	0.41021	1	1499900	+		7698	20832	5467	5517	7490	7490					-0.02937233529655714
EAKTELCKNV	10	Unmodified	_EAKTELCKNV_					0	0	0		GRM7|p.E894K|1|0.2|ENSG00000196277|chr3:7680277-7680277|G/A|missense_variant	GRM7|p.E894K|1|0.2|ENSG00000196277|chr3:7680277-7680277|G/A|missense_variant	GRM7|p.E894K|1|0.2|ENSG00000196277|chr3:7680277-7680277|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	568.2294921875	2	567.794806	1133.57506	0.10198	5.7905E-05	-0.65298	-0.00037076	-0.551	-0.00031285	567.7944158994105	48.595	1.1645	48.595	48.325	49.49	0					32	22	2	0	0	0	0.85226	1	17140	17140		6.2058	0	1	2069800			7699	14091	5468	5518	7491	7491					0.013614470461106976
EAKVLCQSL	9	Unmodified	_EAKVLCQSL_					0	0	0		CD6|p.G307D|1|0.34|ENSG00000013725|chr11:61009710-61009710|G/A|missense_variant;CD6|p.G428Efs*7|1|0.26|ENSG00000013725|chr11:61013549-61013549|T/-|frameshift_variant;nc|ENSG00000013725|P30203-5|CD6;nc|ENSG00000013725|P30203-3|CD6;nc|ENSG00000013725|P30203-4|CD6;nc|ENSG00000013725|P30203-2|CD6;ENSG00000013725|ENST00000313421|CD6	CD6|p.G307D|1|0.34|ENSG00000013725|chr11:61009710-61009710|G/A|missense_variant	CD6|p.G307D|1|0.34|ENSG00000013725|chr11:61009710-61009710|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	496.1683349609375	2	495.76806	989.521567	-0.33291	-0.00016505	-0.060843	-3.0164E-05	-0.39375	-0.00019521	495.7680913166599	54.63	0.50869	54.63	54.415	54.924	0					16	9	2	0	0	0	0.27742	1	19559	19559		23.79	0	1	1661800			7700	338	5469	5519	7492	7492					0.026386943342458835
EALAAAGVDHV	11	Unmodified	_EALAAAGVDHV_					0	0	0		ENST00000495627.1_1_3:49760681-49761159:-|nuORF;ENSG00000173540|ENST00000308388|GMPPB;nc|ENSG00000173540|Q9Y5P6-2|GMPPB	ENST00000495627.1_1_3:49760681-49761159:-|nuORF	ENST00000495627.1_1_3:49760681-49761159:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	526.4382934570312	2	526.772188	1051.52982	-0.7521	-0.00039619	0.76056	0.00040064	0.0084644	4.4588E-06	526.7727064865373	30.808	0.45531	30.808	30.603	31.059	0					10	8	2	0	0	0	0.9836	1	9760	9760		11.495	7.1655	1	745990			7701	7805	5470	5520	7493	7493					0.006119645752278302
EALAAVRGTY	10	Unmodified	_EALAAVRGTY_					0	0	0			REV__tr|U7T286|U7T286_FUSNULargeribosomalsubunitproteinuL18OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplRPE=3SV=1	REV__tr|U7T286|U7T286_FUSNULargeribosomalsubunitproteinuL18OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplRPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	526.2186279296875	2	525.782556	1049.55056	-0.26401	-0.00013881	0.54091	0.0002844	0.2769	0.00014559	525.7824548795923	43.171	0.30759	43.171	42.993	43.3	0					8	5	2	0	0	0	0.88918	1	14930	14930		13.042	9.0981	1	979790	+		7702	28726	5471	5521	7494	7494					0.027765549549030766
EALAHMGSSV	10	Unmodified	_EALAHMGSSV_					0	0	0		NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1;ENST00000587163.1_1_18:21113286-21114508:-|nuORF;ENST00000588867.1_1_18:21114346-21115663:-|nuORF	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	501.21099853515625	2	501.239667	1000.46478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.576	1	40.351	39.851	40.851	0.77451								0	0	0	0.15332	1	14620	14620		10.074	0.72649	1				7703	5244	5472	5522	7495	7495					-0.035433532222555186
EALANASTQY	10	Unmodified	_EALANASTQY_					0	0	0			REV__ENSG00000185112|ENST00000329759|FAM43A	REV__ENSG00000185112|ENST00000329759|FAM43A	MULTI-MSMS	A375_MHC_IP_R2	2	534.6524658203125	2	534.253828	1066.4931	-0.79127	-0.00042274	-1.7575	-0.00093896	-2.5488	-0.0013617	534.2537235724521	74.135	0.40501	74.872	74.706	75.111	0.73752					15	7	3	0	0	0	0.70479	1	28177	28177		10.151	1.4052	1	1472800	+		7704	21869	5473	5523	7496	7496					-0.0374833204132301
EALDTMYQY	9	Unmodified	_EALDTMYQY_					0	0	0		RABEPK|p.G265E|1|0.29|ENSG00000136933|chr9:125232713-125232713|G/A|missense_variant	RABEPK|p.G265E|1|0.29|ENSG00000136933|chr9:125232713-125232713|G/A|missense_variant	RABEPK|p.G265E|1|0.29|ENSG00000136933|chr9:125232713-125232713|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	567.2149658203125	2	567.244615	1132.47468	-0.3668	-0.00020807	-0.50511	-0.00028652	-0.87192	-0.00049459	567.2440330487817	83.078	0.91202	83.817	83.393	84.305	0.73962					28	17	3	0	0	0	0.6898	1	31746	31746		7.9102	0	1	3344000			7705	15263	5474	5524	7497	7497					-0.08626210007537338
EALDWRREELL	11	Unmodified	_EALDWRREELL_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	A375_MHC_IP_R1	1	715.7759399414062	2	715.37534	1428.73613	-0.44856	-0.00032089	0.37684	0.00026958	-0.071721	-5.1307E-05	715.8764231379573	110.92	0.71724	110.92	110.49	111.21	0					19	13	2	0	0	0	0.73078	1	40639	40639		8.1555	0.54658	1	1804700			7706	7831	5475	5525	7498	7498					0.03890912683732495
EALEDRQELVN	11	Unmodified	_EALEDRQELVN_					0	0	0		ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	MULTI-SECPEP	A375_MHC_IP_R2	2	658.7274780273438	2	658.328056	1314.64156	-1.0543	-0.00069411	0.58553	0.00038547	-0.46881	-0.00030863	658.3283662567811	55.054	0.61148	55.805	55.523	56.135	0.75075					30	11	4	0	0	0	0.66194	1	20777	20777		37.771	0	1	16159000			7707	9251	5476	5526	7499	7499					-0.003176458582856867
EALEECPLS	9	Unmodified	_EALEECPLS_					0	0	0			REV__ENSG00000163013|ENST00000520530|FBXO41	REV__ENSG00000163013|ENST00000520530|FBXO41	MULTI-MSMS	A375_MHC_IP_R1	1	496.3393249511719	2	495.726058	989.437562	-0.59016	-0.00029256	-1.4851	-0.00073619	-2.0752	-0.0010287	495.72310587551954	86.088	0.20076	86.088	85.971	86.172	0					5	3	2	0	0	0	0.58047	1	31538	31538		15.847	2.3393	1	403480	+		7708	20329	5477	5527	7500	7500					-0.05757881553302013
EALEEFKKL	9	Unmodified	_EALEEFKKL_					0	0	0		nc|ENSG00000122136|Q9NY56-3|OBP2A;ENSG00000171102|ENST00000372034|OBP2B;ENSG00000122136|ENST00000371776|OBP2A	nc|ENSG00000122136|Q9NY56-3|OBP2A	nc|ENSG00000122136|Q9NY56-3|OBP2A	MULTI-SECPEP	A375_MHC_IP_R2	2	554.195068359375	2	553.808239	1105.60193	-0.64992	-0.00035993	-2.3085	-0.0012785	-2.9585	-0.0016384	553.806177480265	43.255	0.25366	44.027	43.876	44.13	0.7724					6	4	2	0	0	0	0.60917	1	16119	16119		19.257	6.2145	1	556130			7709	3763	5478	5528	7501	7501					0.05334878928965736
EALEKQLVL	9	Unmodified	_EALEKQLVL_					0	0	0		ENSG00000203734|ENST00000541398|ECT2L	ENSG00000203734|ENST00000541398|ECT2L	ENSG00000203734|ENST00000541398|ECT2L	MULTI-SECPEP	A375_MHC_IP_R1	1	522.2106323242188	2	521.810782	1041.60701	-0.54678	-0.00028532	-0.22694	-0.00011842	-0.77373	-0.00040374	521.8106731484582	36.164	0.45637	36.164	35.982	36.439	0					19	8	3	0	0	0	0.53748	1	12083	12083		30.637	0	1	4623200			7710	9393	5479	5529	7502	7502					0.0878718279154782
EALGIGDNSI	10	Unmodified	_EALGIGDNSI_					0	0	0		URI1|p.V327I|1|0.11|ENSG00000105176|chr19:30009297-30009297|G/A|missense_variant	URI1|p.V327I|1|0.11|ENSG00000105176|chr19:30009297-30009297|G/A|missense_variant	URI1|p.V327I|1|0.11|ENSG00000105176|chr19:30009297-30009297|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	495.4884948730469	2	494.750921	987.48729	-0.57975	-0.00028683	-0.11609	-5.7438E-05	-0.69584	-0.00034427	494.7509152290008	40.485	3.1506	41.26	40.828	43.979	0.77451					145	61	4	0	0	0	0.42311	1	14858	14858		32.786	5.1569	1	577040000			7711	30120	5480	5530	7503	7503					-0.006954305530030069
EALGRGAL	8	Unmodified	_EALGRGAL_					0	0	0			REV__nc|ENSG00000140464|P29590-11|PML	REV__nc|ENSG00000140464|P29590-11|PML	MULTI-SECPEP	A375_MHC_IP_R1	1	394.1272277832031	2	393.727052	785.439552	-0.27634	-0.0001088	0.41006	0.00016145	0.13372	5.265E-05	393.72711133183634	26.399	0.50664	26.399	26.322	26.828	0					16	9	2	0	0	0	0.9187	1	7899	7899		25.399	4.9457	1	3235200	+		7712	19213	5481	5531	7504	7504					0.03824960037468372
EALGRLVKL	9	Unmodified	_EALGRLVKL_					0	0	0		ENSG00000179832|ENST00000326134|MROH1;ENST00000536221.1_8:145484984-145485693:+|nuORF	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	A375_MHC_IP_R2	2	500.221435546875	2	499.821484	997.628415	-0.37486	-0.00018736	-0.25681	-0.00012836	-0.63166	-0.00031572	499.8213153437523	46.813	0.66118	47.574	47.309	47.97	0.76128					20	12	2	0	0	0	0.19747	1	17555	17555		38.176	1.6694	1	3261400			7713	8251	5482	5532	7505	7505					0.1295061261095043
EALIDHGEEF	10	Unmodified	_EALIDHGEEF_					0	0	0		CYP2C18|p.S95F|1|0.52|ENSG00000108242|chr10:94687885-94687885|C/T|missense_variant;nc|ENSG00000108242|P33260-2|CYP2C18;ENSG00000108242|ENST00000285979|CYP2C18	CYP2C18|p.S95F|1|0.52|ENSG00000108242|chr10:94687885-94687885|C/T|missense_variant	CYP2C18|p.S95F|1|0.52|ENSG00000108242|chr10:94687885-94687885|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	581.1661987304688	2	580.266936	1158.51932	-0.19599	-0.00011372	-1.1595	-0.00067279	-1.3554	-0.00078652	580.2664286758849	109.41	0.45461	110.16	109.88	110.33	0.74683					16	8	3	0	0	0	0.69306	1	41250	41250		13.906	3.8321	1	1469200			7714	697	5483	5533	7506	7506					-0.053600628698632136
EALIERVSL	9	Unmodified	_EALIERVSL_					0	0	0			REV__ENST00000492364.1_1_X:19362065-19369554:+|nuORF	REV__ENST00000492364.1_1_X:19362065-19369554:+|nuORF	MSMS	A375_MHC_IP_R1	1	515.2266235351562	2	515.300581	1028.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.366	1	90.366	89.866	90.866	0								0	0	0	0.14905	1	33209	33209		23.148	0.41214	1		+		7715	18622	5484	5534	7507	7507					0.07346012131779389
EALKKLKTYA	10	Unmodified	_EALKKLKTYA_					0	0	0		APOL3|p.R60K|1|0.51|ENSG00000128284|chr22:36160713-36160713|C/T|missense_variant	APOL3|p.R60K|1|0.51|ENSG00000128284|chr22:36160713-36160713|C/T|missense_variant	APOL3|p.R60K|1|0.51|ENSG00000128284|chr22:36160713-36160713|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	389.6180725097656	3	388.904413	1163.69141	0.047741	1.8567E-05	-0.22983	-8.9383E-05	-0.18209	-7.0816E-05	388.9042307816602	27.683	0.70734	27.683	27.229	27.937	0					17	13	2	0	0	0	0.92772	1	8452	8452		7.0371	2.9205	1	1484900			7716	163	5485	5535	7508	7508					0.11611133608334967
EALKQLSSP	9	Unmodified	_EALKQLSSP_					0	0	0			REV__nc|ENSG00000185019|O94941-2|UBOX5	REV__nc|ENSG00000185019|O94941-2|UBOX5	MULTI-SECPEP	A375_MHC_IP_R2	2	487.17095947265625	2	486.771657	971.528761	-0.86604	-0.00042156	-0.18557	-9.0332E-05	-1.0516	-0.0005119	486.77161516053616	61.887	0.60667	62.63	62.37	62.976	0.74263					24	11	3	0	0	0	0.11711	1	23429	23429		69.105	4.8686	1	4697700	+		7717	21860	5486	5536	7509	7509					0.04185750206340799
EALLEEWLGL	10	Unmodified	_EALLEEWLGL_					0	0	0		nc|ENSG00000106479|O60290-2|ZNF862;ENSG00000106479|ENST00000223210|ZNF862	nc|ENSG00000106479|O60290-2|ZNF862	nc|ENSG00000106479|O60290-2|ZNF862	MULTI-SECPEP	A375_MHC_IP_R1	1	391.1639709472656	3	391.544773	1171.61249	0.15953	6.2465E-05	-0.0084983	-3.3275E-06	0.15104	5.9137E-05	391.544759972855	46.238	0.50334	46.238	45.992	46.495	0					16	9	2	0	0	0	0.94587	1	16138	16138		0.13989	0.13989	1	3881000			7718	2694	5487	5537	7510	7510					0.03354861583375168
EALLELGEDA	10	Unmodified	_EALLELGEDA_					0	0	0		nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF	nc|ENSG00000179583|P33076|CIITA	nc|ENSG00000179583|P33076|CIITA	MULTI-MSMS	A375_MHC_IP_R2	2	530.6514282226562	2	530.263862	1058.51317	-1.3926	-0.00073844	1.6896	0.00089595	0.29704	0.00015751	530.2646257402192	28.975	0.54692	29.674	29.434	29.981	0.69872					17	10	2	0	0	0	0.57505	1	10207	10207		22.736	0	1	13260000			7719	8241	5488	5538	7511	7511					-0.013745811013450293
EALLNKFSL	9	Unmodified	_EALLNKFSL_					0	0	0		nc|ENSG00000069122|Q8IZF2-3|ADGRF5;ENSG00000069122|ENST00000283296|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	MSMS	A375_MHC_IP_R2	2	517.558837890625	2	517.797675	1033.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.837	1	89.569	89.069	90.069	0.7318								0	0	0	0.13673	1	33810	33810		30.637	0	1				7720	1473	5489	5539	7512	7512					0.06534913620112093
EALLVQFK	8	Unmodified	_EALLVQFK_					0	0	0			REV__ENST00000565834.1_1_15:75631960-75632343:+|nuORF	REV__ENST00000565834.1_1_15:75631960-75632343:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	474.79833984375	2	474.28166	946.548768	-0.61654	-0.00029241	0.30117	0.00014284	-0.31537	-0.00014957	474.2816736654466	81.839	0.40485	82.582	82.279	82.684	0.74293					11	7	2	0	0	0	0.97021	1	31025	31025		15.847	7.2539	1	889110	+		7721	19206	5490	5540	7513	7513					0.07335545936950894
EALPYVFV	8	Unmodified	_EALPYVFV_					0	0	0			REV__ENSG00000145198|ENST00000691901|VWA5B2	REV__ENSG00000145198|ENST00000691901|VWA5B2	MULTI-SECPEP	A375_MHC_IP_R2	2	468.466064453125	2	469.255111	936.49567	-1.0436	-0.00048969	-0.61083	-0.00028664	-1.6544	-0.00077633	469.2548528885371	25.231	0.50897	25.875	25.619	26.128	0.64368					14	9	2	0	0	0	0.96296	1	8399	8399		5.7604	0	1	1607500	+		7722	19463	5491	5541	7514	7514					0.024881681542865408
EALQALKVRSY	11	Unmodified	_EALQALKVRSY_					0	0	0			REV__PTPRZ1|p.H1764Y|1|0.11|ENSG00000106278|chr7:122036605-122036605|C/T|missense_variant	REV__PTPRZ1|p.H1764Y|1|0.11|ENSG00000106278|chr7:122036605-122036605|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	638.676513671875	2	639.364244	1276.71394	-0.778	-0.00049743	1.0911	0.00069761	0.3131	0.00020018	639.3649553426685	30.656	0.30097	31.374	31.216	31.517	0.71857					8	5	2	0	0	0	0.98748	1	10814	10814		13.042	9.446	1	895950	+		7723	27862	5492	5542	7515	7515					0.08664733005957714
EALQKRWAV	9	Unmodified	_EALQKRWAV_					0	0	0			REV__VWA3B|p.E558K|2|0.19|ENSG00000168658|chr2:98194427-98194427|G/A|missense_variant	REV__VWA3B|p.E558K|2|0.19|ENSG00000168658|chr2:98194427-98194427|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6759033203125	2	550.81419	1099.61383	-0.67366	-0.00037106	0.11212	6.1759E-05	-0.56154	-0.0003093	550.8141620416661	79.392	0.40418	80.137	79.946	80.35	0.74474					11	7	2	0	0	0	0.63327	1	30168	30168		18.146	8.7989	1	2727200	+		7724	28990	5493	5543	7516	7516					0.06800540462791105
EALQPIYGF	9	Unmodified	_EALQPIYGF_					0	0	0			REV__ENSG00000109205|ENST00000683306|ODAM	REV__ENSG00000109205|ENST00000683306|ODAM	MULTI-SECPEP	A375_MHC_IP_R2	2	519.6689453125	2	519.26875	1036.52295	-0.65763	-0.00034149	0.53478	0.0002777	-0.12285	-6.3793E-05	519.2689464496092	105.37	0.45716	106.14	105.97	106.43	0.76308					14	8	2	0	0	0	0.67483	1	39888	39888		10.074	0.6908	1	1349900	+		7725	17575	5494	5544	7517	7517					0.006146516946500924
EALQPIYGF	9	Unmodified	_EALQPIYGF_					0	0	0			REV__ENSG00000109205|ENST00000683306|ODAM	REV__ENSG00000109205|ENST00000683306|ODAM	MULTI-MATCH	A375_MHC_IP_R1	1		2	519.26875	1036.52295	-0.36269	-0.00018833	-0.062707	-3.2562E-05	-0.42539	-0.00022089	519.2682144518134	106.24	0.46051	106.24	105.91	106.37	0	0.051223	-0.00047071	NaN	10.074	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	976970	+		7726	17575	5494	5544							0.006146516946500924
EALQQQFM	8	Unmodified	_EALQQQFM_					0	0	0			REV__ENSG00000116128|ENST00000234739|BCL9	REV__ENSG00000116128|ENST00000234739|BCL9	MULTI-SECPEP	A375_MHC_IP_R2	2	497.64752197265625	2	497.73676	993.458967	-0.47	-0.00023393	0.40574	0.00020195	-0.064254	-3.1981E-05	497.7370484485736	80.015	0.40405	80.76	80.556	80.961	0.74473					11	7	2	0	0	0	0.95423	1	30355	30355		18.135	0	1	1492900	+		7727	17939	5495	5545	7518	7518					-0.03802451733918133
EALQTSGRPI	10	Unmodified	_EALQTSGRPI_					0	0	0		nc|nan|Q9H3H3-1|C11orf68;nc|nan|Q9H3H3|C11orf68;ENSG00000175573|ENST00000438576|C11orf68	nc|nan|Q9H3H3-1|C11orf68	nc|nan|Q9H3H3-1|C11orf68	MULTI-SECPEP	A375_MHC_IP_R2	2	536.2315063476562	2	536.293288	1070.57202	-1.1637	-0.00062409	0.36183	0.00019405	-0.80189	-0.00043005	536.293112470547	58.286	0.45768	59.035	58.779	59.237	0.74894					20	8	3	0	0	0	0.92227	1	21970	21970		5.2969	0	1	3205100			7728	7970	5496	5546	7519	7519					0.03955939983643475
EALREKLREDQ	11	Unmodified	_EALREKLREDQ_					0	0	0		ENSG00000110811|ENST00000290510|P3H3;nc|ENSG00000110811|Q8IVL6-2|P3H3;ENST00000541956.5_1_12:6940459-6946454:+|nuORF	ENSG00000110811|ENST00000290510|P3H3	ENSG00000110811|ENST00000290510|P3H3	MULTI-MSMS	A375_MHC_IP_R1	1	693.5079345703125	2	693.870422	1385.72629	-0.61927	-0.00042969	0.9807	0.00068048	0.36143	0.00025079	694.37250071701	74.092	0.35463	74.092	73.893	74.247	0					17	6	3	0	0	0	0.72801	1	26956	26956		10.8	3.6978	1	1654100			7729	2950	5497	5547	7520	7520					0.0488572467834274
EALRRAKFK	9	Unmodified	_EALRRAKFK_					0	0	0		ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;RPL10|p.P160S|1|0.96|ENSG00000147403|chrX:154400612-154400612|C/T|missense_variant;ENST00000444036.1_1_21:34213912-34214044:-|nuORF;ENST00000431607.1_1_9:119942983-119943337:-|nuORF;ENST00000491035.5_1_X:153628724-153629192:+|nuORF	ENSG00000165496|ENST00000298283|RPL10L;ENST00000491035.5_1_X:153628724-153629192:+|nuORF	ENSG00000165496|ENST00000298283|RPL10L	MSMS	A375_MHC_IP_R1	1	373.6169738769531	3	373.564614	1117.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.364	1	31.364	30.864	31.864	0								0	0	0	0.15486	1	10040	10040		4.1895	0.86986	1				7730	5679;12653	5498	5548	7521	7521					0.11788222108066293
EALSKSKAEVM	11	Unmodified	_EALSKSKAEVM_					0	0	0		ENST00000420252.1_1_7:12511002-12511287:+|nuORF	ENST00000420252.1_1_7:12511002-12511287:+|nuORF	ENST00000420252.1_1_7:12511002-12511287:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	398.6122741699219	3	398.212918	1191.61692	-0.20338	-8.099E-05	-1.1234	-0.00044737	-1.3268	-0.00052836	398.2126450856461	34.679	0.40576	34.679	34.353	34.759	0					10	7	2	0	0	0	0.63737	1	11470	11470		12.228	3.4758	1	2682500			7731	11725	5499	5549	7522	7522					0.028780027346329007
EALSYSLSQ	9	Unmodified	_EALSYSLSQ_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	A375_MHC_IP_R1	1	498.9931640625	2	499.245472	996.476391	-0.69145	-0.0003452	0.033981	1.6965E-05	-0.65747	-0.00032824	499.24548119054793	30.628	0.40525	30.628	30.503	30.908	0					10	7	2	0	0	0	0.76187	1	9858	9858		0.40072	0	1	1792300	+		7732	18428	5500	5550	7523	7523					-0.021988329272744522
EALVDFTGGVT	11	Unmodified	_EALVDFTGGVT_					0	0	0		nc|ENSG00000214711|A8MX76-2|CAPN14;ENSG00000214711|ENST00000403897|CAPN14	nc|ENSG00000214711|A8MX76-2|CAPN14	nc|ENSG00000214711|A8MX76-2|CAPN14	MULTI-SECPEP	A375_MHC_IP_R1	1	554.7032470703125	2	554.779679	1107.5448	-0.065536	-3.6358E-05	-0.093198	-5.1704E-05	-0.15873	-8.8062E-05	554.7794315621348	48.95	0.86121	48.95	48.629	49.49	0					37	16	3	0	0	0	0.90673	1	17308	17308		18.373	6.1324	1	3863000			7733	9624	5501	5551	7524	7524					-0.004665883473990107
EALVKSYNQ	9	Unmodified	_EALVKSYNQ_					0	0	0			REV__nc|ENSG00000163606|Q8TD46-1|CD200R1	REV__nc|ENSG00000163606|Q8TD46-1|CD200R1	MULTI-MSMS	A375_MHC_IP_R1	1	526.19140625	2	526.274564	1050.53457	-0.48249	-0.00025392	0.33167	0.00017455	-0.15082	-7.9372E-05	526.2774057821852	74.775	1.1632	74.775	74.451	75.614	0					30	22	3	0	0	0	0.55471	1	27444	27444		17.113	2.2746	1	1151600	+		7734	20382	5502	5552	7525	7525					0.011328487179980584
EALVRSMK	8	Unmodified	_EALVRSMK_					0	0	0			REV__PC|p.A446V|1|0.2|ENSG00000173599|chr11:66863805-66863805|G/A|missense_variant	REV__PC|p.A446V|1|0.2|ENSG00000173599|chr11:66863805-66863805|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	466.67626953125	2	467.262945	932.511337	-0.80587	-0.00037655	-0.010799	-5.0459E-06	-0.81667	-0.0003816	467.2629395840271	37.797	0.30553	38.572	38.382	38.687	0.77451					8	5	2	0	0	0	0.86263	1	13794	13794		20.454	0	1	2134000	+		7735	27720	5503	5553	7526	7526					0.04238131399688427
EALVWIGNTLK	11	Unmodified	_EALVWIGNTLK_					0	0	0			REV__nc|ENSG00000100280|Q10567-4|AP1B1	REV__nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	A375_MHC_IP_R2	2	415.6385192871094	3	415.239684	1242.69722	-0.049908	-2.0724E-05	-3.1957	-0.001327	-3.2456	-0.0013477	415.2386600040265	27.9	0.3046	28.579	28.401	28.706	0.67857					11	5	3	0	0	0	0.73239	1	9602	9602		6.6235	0.43161	1	3074100	+		7736	17067	5504	5554	7527	7527					0.08558232119980858
EALYRMGSAI	10	Unmodified	_EALYRMGSAI_					0	0	0			REV__ENST00000487222.5_1_7:100401085-100421908:-|nuORF	REV__ENST00000487222.5_1_7:100401085-100421908:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	556.1841430664062	2	555.784241	1109.55393	-0.66048	-0.00036708	0.25342	0.00014085	-0.40706	-0.00022624	555.7843483602503	68.36	0.55787	69.095	68.765	69.323	0.73511					25	10	3	0	0	0	0.30287	1	25867	25867		39.95	1.7741	1	12680000	+		7737	22193	5505	5555	7528	7528					0.0035348173726106324
EALYSVPRDP	10	Unmodified	_EALYSVPRDP_					0	0	0		EBF2|p.N408D|1|0.36|ENSG00000221818|chr8:25861169-25861169|T/C|missense_variant	EBF2|p.N408D|1|0.36|ENSG00000221818|chr8:25861169-25861169|T/C|missense_variant	EBF2|p.N408D|1|0.36|ENSG00000221818|chr8:25861169-25861169|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	382.6125793457031	3	382.864506	1145.57169	-0.57807	-0.00022132	0.76408	0.00029254	0.186	7.1213E-05	382.8646689216924	29.727	0.55392	30.425	30.236	30.79	0.69872					15	10	2	0	0	0	0.87043	1	10395	10395		9.7643	3.5724	1	4326900			7738	815	5506	5556	7529	7529					0.0047252026377009315
EAMEHCQQQY	10	Unmodified	_EAMEHCQQQY_					0	0	0			REV__nc|ENSG00000143751|Q6IQ49-3|SDE2	REV__nc|ENSG00000143751|Q6IQ49-3|SDE2	MULTI-MSMS	A375_MHC_IP_R2	2	633.7462158203125	2	633.74753	1265.48051	-0.90473	-0.00057337	0.60348	0.00038245	-0.30125	-0.00019091	633.7485539666528	55.287	0.40764	56.038	55.779	56.187	0.75075					10	7	2	0	0	0	0.69306	1	20928	20928		13.906	1.6654	1	2200900	+		7739	19383	5507	5557	7530	7530					-0.14161434767515857
EAMEHPYFY	9	Unmodified	_EAMEHPYFY_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3	ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-SECPEP	A375_MHC_IP_R1	1	594.1834106445312	2	593.747324	1185.4801	-0.21158	-0.00012563	-0.22248	-0.0001321	-0.43406	-0.00025772	593.7477414675484	53.887	0.30607	53.887	53.656	53.962	0					7	5	2	0	0	0	0.78348	1	19155	19155		1.8442	0	1	1310900			7740	1500;2276	5508	5558	7531	7531					-0.10522486425088573
EAMEVEGGNSK	11	Unmodified	_EAMEVEGGNSK_					0	0	0		ENST00000555656.5_1_14:20917248-20917425:-|nuORF	ENST00000555656.5_1_14:20917248-20917425:-|nuORF	ENST00000555656.5_1_14:20917248-20917425:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	576.156005859375	2	575.755878	1149.4972	-0.13149	-7.5705E-05	0.56634	0.00032607	0.43485	0.00025037	575.7561815425754	70.601	0.50951	70.601	70.341	70.85	0					21	9	3	0	0	0	0.97182	1	25650	25650		18.373	18.373	1	2973300			7741	13433	5509	5559	7532	7532					-0.07156610609922609
EAMGKLYNFS	10	Unmodified	_EAMGKLYNFS_					0	0	0		ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1	ENST00000504745.1_1_4:113347516-113362363:+|nuORF	ENST00000504745.1_1_4:113347516-113362363:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	387.5865478515625	3	387.186592	1158.53795	-0.10565	-4.0906E-05	0.29321	0.00011353	0.18756	7.2621E-05	387.1866196009694	27.598	0.65902	28.276	27.843	28.502	0.67857					20	12	2	0	0	0	0.91643	1	9457	9457		11.065	7.993	1	10015000			7742	1560	5510	5560	7533	7533					-0.03498224499662683
EAMKILYYYNF	11	Unmodified	_EAMKILYYYNF_					0	0	0		ENST00000399231.7_1_15:52602027-52602213:-|nuORF	ENST00000399231.7_1_15:52602027-52602213:-|nuORF	ENST00000399231.7_1_15:52602027-52602213:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	486.14935302734375	3	485.572335	1453.69517	-0.8735	-0.00042415	-0.21323	-0.00010354	-1.0867	-0.00052768	485.57216531263106	19.056	0.40163	19.659	19.533	19.935	0.60308					16	7	4	0	0	0	0.73809	1	5683	5683		1.2148	1.12	1	12435000			7743	11536	5511	5561	7534	7534					-0.01352564680132673
EAMKSQRGQKN	11	Unmodified	_EAMKSQRGQKN_					0	0	0			REV__ENST00000508769.1_1_5:175665484-175697435:+|nuORF	REV__ENST00000508769.1_1_5:175665484-175697435:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	638.06689453125	2	638.82496	1275.63537	-0.82538	-0.00052727	-2.2202	-0.0014183	-3.0456	-0.0019456	639.3238899068451	74.736	0.40719	75.473	75.214	75.621	0.73752					10	7	2	0	0	0	0.99018	1	28392	28392		7.609	1.4032	1	2297600	+		7744	25585	5512	5562	7535	7535					0.008575574292081
EAMMIKTTI	9	Unmodified	_EAMMIKTTI_					0	0	0		ENST00000269228.9_1_18:21128039-21131656:-|nuORF	ENST00000269228.9_1_18:21128039-21131656:-|nuORF	ENST00000269228.9_1_18:21128039-21131656:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	519.9856567382812	2	519.272121	1036.52969	-0.65578	-0.00034053	-1.8161	-0.00094308	-2.4719	-0.0012836	519.2710867422833	83.182	0.65899	83.922	83.595	84.254	0.73962					22	12	3	0	0	0	0.65246	1	31701	31701		6.7232	0	1	1417200			7745	10368	5513	5563	7536	7536					0.012885052593674118
EAMQQAPDGAH	11	Unmodified	_EAMQQAPDGAH_					0	0	0		ENST00000536344.5_1_11:6479060-6495064:-|nuORF;nc|ENSG00000110171|O75382-3|TRIM3;nc|ENSG00000110171|O75382-2|TRIM3;ENSG00000110171|ENST00000345851|TRIM3	ENST00000536344.5_1_11:6479060-6495064:-|nuORF	ENST00000536344.5_1_11:6479060-6495064:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	577.6934204101562	2	577.748387	1153.48222	-0.18779	-0.00010849	-0.67563	-0.00039034	-0.86341	-0.00049884	577.7479144781415	57.711	0.96404	57.711	57.313	58.278	0					43	18	3	0	0	0	0.73078	1	20872	20872		8.1555	3.3995	1	10476000			7746	2923	5514	5564	7537	7537					-0.08838057687285072
EAMQQQLA	8	Unmodified	_EAMQQQLA_					0	0	0			REV__nc|ENSG00000126001|Q9BV73-2|CEP250	REV__nc|ENSG00000126001|Q9BV73-2|CEP250	MSMS	A375_MHC_IP_R2	2	459.65594482421875	2	459.72111	917.427666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.408	1	36.171	35.671	36.671	0.76338								0	0	0	0.16876	1	12837	12837		13.508	0	1		+		7747	18376	5515	5565	7538	7538					-0.03435024768020867
EAMRIYLIL	9	Unmodified	_EAMRIYLIL_					0	0	0		ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	MULTI-SECPEP	A375_MHC_IP_R1	1	374.9784240722656	3	374.551094	1120.63145	0.47581	0.00017822	-0.40792	-0.00015279	0.067892	2.5429E-05	374.5509627014532	51.5	0.25284	51.5	51.322	51.575	0					6	4	2	0	0	0	0.80332	1	18297	18297		0.96228	0	1	767450			7748	5014	5516	5566	7539	7539					0.07596119673439716
EAMRKRRLREQ	11	Unmodified	_EAMRKRRLREQ_					0	0	0		nc|ENSG00000050628|P43115-9|PTGER3;nc|ENSG00000050628|P43115-11|PTGER3;nc|ENSG00000050628|P43115-10|PTGER3	nc|ENSG00000050628|P43115-9|PTGER3	nc|ENSG00000050628|P43115-9|PTGER3	MULTI-SECPEP	A375_MHC_IP_R1	1	492.3465881347656	3	491.612409	1471.8154	-0.27741	-0.00013638	-0.054718	-2.69E-05	-0.33213	-0.00016328	491.9466850596623	52.188	0.40634	52.188	51.93	52.336	0					14	7	3	0	0	0	1.0011	1	18572	18572		0.45452	0	1	2387800			7749	14466	5517	5567	7540	7540					0.09836281156867699
EAMRWCSI	8	Unmodified	_EAMRWCSI_					0	0	0			REV__nc|ENSG00000111581|P57740-3|NUP107	REV__nc|ENSG00000111581|P57740-3|NUP107	MULTI-MSMS	A375_MHC_IP_R1	1	498.6253967285156	2	498.225505	994.436457	-0.40198	-0.00020028	0.63887	0.0003183	0.23689	0.00011802	498.22586925165496	77.363	0.60728	77.363	77.032	77.639	0					20	11	2	0	0	0	0.74466	1	28194	28194		21.747	3.6117	1	2586300	+		7750	17677	5518	5568	7541	7541					-0.060983744032000686
EAMRWCSI	8	Unmodified	_EAMRWCSI_					0	0	0			REV__nc|ENSG00000111581|P57740-3|NUP107	REV__nc|ENSG00000111581|P57740-3|NUP107	MULTI-SECPEP	A375_MHC_IP_R1	1	498.6253967285156	2	498.225505	994.436457	-0.40198	-0.00020028	0.63887	0.0003183	0.23689	0.00011802	498.22586925165496	77.363	0.60728	77.363	77.032	77.639	0					20	11	2	0	0	0	0.8957	1	28194	28194		21.747	3.6117	1	2586300	+		7751	17677	5518	5568	7542	7542					-0.060983744032000686
EAMVDTKGGF	10	Unmodified	_EAMVDTKGGF_					0	0	0		ENST00000586527.1_1_17:73787943-73788476:+|nuORF	ENST00000586527.1_1_17:73787943-73788476:+|nuORF	ENST00000586527.1_1_17:73787943-73788476:+|nuORF	MSMS	A375_MHC_IP_R2	2	527.6422119140625	2	527.747324	1053.4801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.378	1	66.116	65.616	66.616	0.73811								0	0	0	0.15207	1	24787	24787		13.906	1.6654	1				7752	13728	5519	5569	7543	7543					-0.04450486425048439
EANALYSF	8	Unmodified	_EANALYSF_					0	0	0		ENSG00000186648|ENST00000342740|CARMIL3	ENSG00000186648|ENST00000342740|CARMIL3	ENSG00000186648|ENST00000342740|CARMIL3	MULTI-MSMS	A375_MHC_IP_R1	1	458.64251708984375	2	457.71635	913.418148	-0.57556	-0.00026344	0.49912	0.00022845	-0.076438	-3.4987E-05	457.71641381635857	30.216	0.95827	30.216	29.899	30.857	0					40	18	3	0	0	0	0.75805	1	9724	9724		18.135	4.6271	1	5013300			7753	8769	5520	5570	7544	7544					-0.04202469781898799
EANARRQA	8	Unmodified	_EANARRQA_					0	0	0		ENST00000567791.1_1_16:66955609-66957656:-|nuORF;ENSG00000166592|ENST00000299759|RRAD	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	MSMS	A375_MHC_IP_R2	2	458.28216552734375	2	458.24139	914.468226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.151	1	24.794	24.294	25.294	0.64368								0	0	0	0.16876	1	7887	7887		15.847	4.2069	1				7754	7093	5521	5571	7545	7545					0.0075707766661707865
EANEDADEPE	10	Unmodified	_EANEDADEPE_					0	0	0			REV__ENSG00000178605|ENST00000326153|GTPBP6	REV__ENSG00000178605|ENST00000326153|GTPBP6	MULTI-MSMS	A375_MHC_IP_R1	1	560.2133178710938	2	559.709647	1117.40474	-0.5078	-0.00028422	-2.0984	-0.0011745	-2.6062	-0.0014587	560.2090093383888	99.496	0.45572	99.496	99.218	99.673	0					13	8	2	0	0	0	0.71361	1	36490	36490		6.2058	0	1	1927600	+		7755	21510	5522	5572	7546	7546					-0.14926417142442006
EANEEQKKI	9	Unmodified	_EANEEQKKI_					0	0	0		tr|U7T3S4|U7T3S4_FUSNUBifunctionalproteinGlmUOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmUPE=3SV=1	tr|U7T3S4|U7T3S4_FUSNUBifunctionalproteinGlmUOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmUPE=3SV=1	tr|U7T3S4|U7T3S4_FUSNUBifunctionalproteinGlmUOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmUPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	364.2573547363281	3	363.524261	1087.55095	0.19792	7.1947E-05	-1.6006	-0.00058187	-1.4027	-0.00050992	363.85717849055646	39.402	0.50711	39.402	39.136	39.643	0					12	9	2	0	0	0	0.67483	1	13465	13465		6.6304	0	1	3011500			7756	29984	5523	5573	7547	7547					0.010679298841068885
EANNKRRE	8	Unmodified	_EANNKRRE_					0	0	0			REV__tr|U7T4S4|U7T4S4_FUSNUCelldivisionproteinFtsZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsZPE=3SV=1	REV__tr|U7T4S4|U7T4S4_FUSNUCelldivisionproteinFtsZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsZPE=3SV=1	MSMS	A375_MHC_IP_R2	2	508.6869201660156	2	508.765229	1015.5159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.777	1	27.437	26.937	27.937	0.65992								0	0	0	0.16876	1	9084	9084		11.64	0	1		+		7757	28803	5524	5574	7548	7548					0.008767318667992186
EANPDKRIY	9	Unmodified	_EANPDKRIY_					0	0	0			REV__ENST00000483823.1_1_3:88997907-88998639:+|nuORF	REV__ENST00000483823.1_1_3:88997907-88998639:+|nuORF	MSMS	A375_MHC_IP_R2	2	553.3541259765625	2	553.285463	1104.55637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.072	1	86.805	86.305	87.305	0.733								0	0	0	0.15486	1	32731	32731		8.5933	0	1		+		7758	25293	5525	5575	7549	7549					0.008276534665810686
EANPVETDF	9	Unmodified	_EANPVETDF_					0	0	0			REV__GIMAP4|p.S100F|1|0.56|ENSG00000133574|chr7:150572369-150572369|C/T|missense_variant	REV__GIMAP4|p.S100F|1|0.56|ENSG00000133574|chr7:150572369-150572369|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	511.6270446777344	2	511.227279	1020.44001	0.002516	1.2862E-06	-0.63217	-0.00032318	-0.62965	-0.0003219	511.2269344503415	48.755	0.60667	48.755	48.577	49.184	0					16	11	2	0	0	0	0.73363	1	17243	17243		10.824	0	1	2243200	+		7759	18722	5526	5576	7550	7550					-0.06939709824007423
EANRLFAVNQ	10	Unmodified	_EANRLFAVNQ_					0	0	0		ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	MULTI-SECPEP	A375_MHC_IP_R1	1	580.7278442382812	2	581.304187	1160.59382	0.094691	5.5044E-05	-0.78233	-0.00045477	-0.68764	-0.00039973	581.3036465744985	21.903	0.25533	21.903	21.757	22.013	0					7	4	2	0	0	0	0.93405	1	5839	5839		8.7454	2.5396	1	1176600			7760	9059	5527	5577	7551	7551					0.01994744732178333
EANSINRSL	9	Unmodified	_EANSINRSL_					0	0	0		nc|ENSG00000136883|Q96FN5|KIF12;ENSG00000136883|ENST00000640217|KIF12	nc|ENSG00000136883|Q96FN5|KIF12	nc|ENSG00000136883|Q96FN5|KIF12	MSMS	A375_MHC_IP_R2	2	502.1820068359375	2	502.261988	1002.50942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.19	1	43.963	43.463	44.463	0.7724								0	0	0	0.13141	1	16085	16085		32.305	5.4218	1				7761	4837	5528	5578	7552	7552					0.008267939154393389
EANVDTVDI	9	Unmodified	_EANVDTVDI_					0	0	0		nc|ENSG00000065413|Q8N8A2-4|ANKRD44;ENSG00000065413|ENST00000282272|ANKRD44;nc|ENSG00000065413|Q8N8A2-2|ANKRD44	nc|ENSG00000065413|Q8N8A2-4|ANKRD44	nc|ENSG00000065413|Q8N8A2-4|ANKRD44	MSMS	A375_MHC_IP_R1	1	488.1666564941406	2	488.235104	974.455655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.677	1	31.677	31.177	32.177	0								0	0	0	0.14677	1	10162	10162		26.884	1.4843	1				7762	1381	5529	5579	7553	7553					-0.03259423306951703
EAPAALHV	8	Unmodified	_EAPAALHV_					0	0	0		ENSG00000204175|ENST00000374314|GPRIN2	ENSG00000204175|ENST00000374314|GPRIN2	ENSG00000204175|ENST00000374314|GPRIN2	MSMS	A375_MHC_IP_R2	2	404.3106994628906	2	404.221603	806.428653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.524	1	25.167	24.667	25.667	0.64368								0	0	0	0.16876	1	8068	8068		18.135	8.7875	1				7763	9412	5530	5580	7554	7554					0.01769557663192245
EAPAFLLPDGG	11	Unmodified	_EAPAFLLPDGG_					0	0	0			REV__ENSG00000173404|ENST00000310227|INSM1	REV__ENSG00000173404|ENST00000310227|INSM1	MULTI-MSMS	A375_MHC_IP_R2	2	544.6883544921875	2	543.776939	1085.53933	-0.85472	-0.00046478	-0.22848	-0.00012424	-1.0832	-0.00058902	543.7768527373588	75.155	1.0165	75.892	75.621	76.637	0.73752					45	19	3	0	0	0	0.72728	1	28664	28664		11.495	2.1473	1	13558000	+		7764	21219	5531	5581	7555	7555					-2.2671392343909247E-05
EAPIAKKEI	9	Unmodified	_EAPIAKKEI_					0	0	0		nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A;nc|ENSG00000107957|Q5TCZ1-3|SH3PXD2A;ENSG00000107957|ENST00000369774|SH3PXD2A	nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	MULTI-SECPEP	A375_MHC_IP_R2	2	500.197265625	2	499.797675	997.580796	-0.88075	-0.0004402	-0.046109	-2.3045E-05	-0.92686	-0.00046324	499.79756710496486	61.521	0.65425	62.266	61.97	62.624	0.74503					22	12	3	0	0	0	0.28216	1	23298	23298		41.84	3.8656	1	3254400			7765	2773	5532	5582	7556	7556					0.08190913620080664
EAPKEVNIDH	10	Unmodified	_EAPKEVNIDH_					0	0	0		ENSG00000143333|ENST00000367558|RGS16;nc|ENSG00000143248|O15539-2|RGS5;ENSG00000143248|ENST00000313961|RGS5	ENSG00000143333|ENST00000367558|RGS16	ENSG00000143333|ENST00000367558|RGS16	MULTI-SECPEP	A375_MHC_IP_R1	1	384.62396240234375	3	384.527894	1150.56185	0.57511	0.00022115	0.35747	0.00013746	0.93258	0.0003586	384.86230379925536	39.065	0.356	39.065	38.933	39.289	0					9	6	2	0	0	0	0.90513	1	13267	13267		14.957	8.3337	1	1928000			7766	5370	5533	5583	7557	7557					-0.0074066774163839
EAPLVCSGLKL	11	Unmodified	_EAPLVCSGLKL_					0	0	0		nc|ENSG00000119231|Q96HI0-2|SENP5;ENSG00000119231|ENST00000323460|SENP5	nc|ENSG00000119231|Q96HI0-2|SENP5	nc|ENSG00000119231|Q96HI0-2|SENP5	MULTI-MSMS	A375_MHC_IP_R2	2	377.5964050292969	3	377.21437	1128.62128	-0.072684	-2.7417E-05	2.9288	0.0011048	2.8561	0.0010774	377.2159802638898	18.858	0.51213	19.461	19.423	19.935	0.60308					20	11	3	0	0	0	0.72909	1	5790	5790		9.7643	4.8672	1	20978000			7767	3577	5534	5584	7558	7558					0.06211511948208681
EAPPLTSCTY	10	Unmodified	_EAPPLTSCTY_					0	0	0			REV__ENST00000346693.8_1_X:149935131-149935296:-|nuORF	REV__ENST00000346693.8_1_X:149935131-149935296:-|nuORF	MSMS	A375_MHC_IP_R2	2	541.1710815429688	2	541.247157	1080.47976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.606	1	66.344	65.844	66.844	0.73811								0	0	0	0.15158	1	24873	24873		14.838	0.25658	1		+		7768	23777	5535	5585	7559	7559					-0.057259061449030924
EAPRFDGLY	9	Unmodified	_EAPRFDGLY_					0	0	0			REV__ENST00000468655.1_1_19:49994004-49994437:+|nuORF	REV__ENST00000468655.1_1_19:49994004-49994437:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	535.236572265625	2	534.261456	1066.50836	-0.50748	-0.00027113	0.16521	8.8267E-05	-0.34227	-0.00018286	534.2614654644232	72.296	2.024	72.296	71.565	73.589	0					108	39	5	0	0	0	0.63811	1	26164	26164		12.532	3.9383	1	125010000	+		7769	25086	5536	5586	7560	7560					-0.02223420453469771
EAQAGRLPLL	10	Unmodified	_EAQAGRLPLL_					0	0	0		RCCD1|p.G219Afs*7|1|0.16|ENSG00000166965|chr15:90957697-90957697|G/-|frameshift_variant;RCCD1|p.W220Lfs*8|1|0.51|ENSG00000166965|chr15:90957696-90957697|-/G|frameshift_variant;ENST00000557266.5_1_15:91500194-91504996:+|nuORF;ENSG00000166965|ENST00000394258|RCCD1;ENST00000555737.5_1_15:91500194-91503934:+|nuORF	RCCD1|p.G219Afs*7|1|0.16|ENSG00000166965|chr15:90957697-90957697|G/-|frameshift_variant	RCCD1|p.G219Afs*7|1|0.16|ENSG00000166965|chr15:90957697-90957697|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	534.1740112304688	2	534.314023	1066.61349	-0.71784	-0.00038355	-0.40487	-0.00021633	-1.1227	-0.00059988	534.3135669928697	52.446	0.30489	52.446	52.287	52.592	0					8	5	2	0	0	0	0.88918	1	18637	18637		5.2969	0	1	1416900			7770	7143	5537	5587	7561	7561					0.08285120742925756
EAQDLDLLTLY	11	Unmodified	_EAQDLDLLTLY_					0	0	0		ENST00000558902.5_1_15:52548900-52571163:-|nuORF	ENST00000558902.5_1_15:52548900-52571163:-|nuORF	ENST00000558902.5_1_15:52548900-52571163:-|nuORF	MSMS	A375_MHC_IP_R2	2	431.9432067871094	3	431.890609	1292.65	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.637	1	20.248	19.748	20.748	0.61029								0	0	0	0.162	1	6049	6049		8.2864	0	1				7771	13476	5538	5588	7562	7562					0.015379080583443283
EAQEQVEKF	9	Unmodified	_EAQEQVEKF_					0	0	0			REV__SYNE1|p.S1252F|1|0.78|ENSG00000131018|chr6:152444493-152444493|G/A|missense_variant	REV__SYNE1|p.S1252F|1|0.78|ENSG00000131018|chr6:152444493-152444493|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	554.704833984375	2	554.269478	1106.5244	-0.80073	-0.00044382	-0.027791	-1.5404E-05	-0.82852	-0.00045922	554.2697147156775	32.248	0.35609	32.985	32.857	33.213	0.73692					10	6	2	0	0	0	0.4875	1	11517	11517		20.415	2.2796	1	2850600	+		7772	28072	5539	5589	7563	7563					-0.024597590072289677
EAQFLRWDRNE	11	Unmodified	_EAQFLRWDRNE_					0	0	0		ENST00000367723.8_1_1:172579544-172579724:+|nuORF	ENST00000367723.8_1_1:172579544-172579724:+|nuORF	ENST00000367723.8_1_1:172579544-172579724:+|nuORF	MSMS	A375_MHC_IP_R1	1	488.4692077636719	3	488.572385	1462.69533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.965	1	58.965	58.465	59.465	0								0	0	0	0.16338	1	21196	21196		1.1098	0.65524	1				7773	11101	5540	5590	7564	7564					-0.01751428635884622
EAQHSIICKAC	11	Unmodified	_EAQHSIICKAC_					0	0	0		USP37|p.V483A|1|0.33|ENSG00000135913|chr2:218495784-218495784|A/G|missense_variant	USP37|p.V483A|1|0.33|ENSG00000135913|chr2:218495784-218495784|A/G|missense_variant	USP37|p.V483A|1|0.33|ENSG00000135913|chr2:218495784-218495784|A/G|missense_variant	MSMS	A375_MHC_IP_R2	2	601.7066650390625	2	601.786458	1201.55836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.058	1	23.688	23.188	24.188	0.63014								0	0	0	0.16249	1	7370	7370		5.7319	0	1				7774	30129	5541	5591	7565	7565					-0.03435377111463822
EAQKKRAVR	9	Unmodified	_EAQKKRAVR_					0	0	0		ENST00000534548.6_2_11:134026939-134027852:-|nuORF	ENST00000534548.6_2_11:134026939-134027852:-|nuORF	ENST00000534548.6_2_11:134026939-134027852:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	362.9559326171875	3	362.556118	1084.64652	-0.3868	-0.00014024	3.921	0.0014216	3.5343	0.0012814	362.8919316390492	18.855	0.86787	19.458	19.423	20.291	0.60308					32	18	2	0	0	0	0.57304	1	5819	5819		18.373	0	1	23624000			7775	13212	5542	5592	7566	7566					0.10758747585646233
EAQLLHPW	8	Unmodified	_EAQLLHPW_					0	0	0		ENST00000523627.1_1_8:22547810-22603101:+|nuORF	ENST00000523627.1_1_8:22547810-22603101:+|nuORF	ENST00000523627.1_1_8:22547810-22603101:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	497.64752197265625	2	497.261259	992.507966	-0.44761	-0.00022258	-0.86415	-0.00042971	-1.3118	-0.00065228	497.26066743543436	79.888	0.5602	80.632	80.35	80.91	0.74474					15	10	2	0	0	0	0.8957	1	30355	30355		28.487	15.955	1	2255500			7776	13045	5543	5593	7567	7567					0.01141204617317726
EAQLQPAPQPQ	11	Unmodified	_EAQLQPAPQPQ_					0	0	0		nc|ENSG00000158321|Q8WXX7-2|AUTS2;ENSG00000158321|ENST00000342771|AUTS2	nc|ENSG00000158321|Q8WXX7-2|AUTS2	nc|ENSG00000158321|Q8WXX7-2|AUTS2	MULTI-MSMS	A375_MHC_IP_R1	1	402.92926025390625	3	402.875293	1205.60405	-0.43561	-0.0001755	1.9149	0.00077146	1.4793	0.00059596	402.87547673014774	24.803	0.90986	24.803	24.447	25.357	0					34	17	4	0	0	0	0.72801	1	7011	7011		8.7518	4.0359	1	18314000			7777	6301	5544	5594	7568	7568					0.009473076667518399
EAQQKLNGLK	10	Unmodified	_EAQQKLNGLK_					0	0	0			REV__ENSG00000122952|ENST00000373944|ZWINT	REV__ENSG00000122952|ENST00000373944|ZWINT	MULTI-SECPEP	A375_MHC_IP_R2	2	1128.9219970703125	1	1128.63715	1127.62987	0.30882	0.00034855	-1.1188	-0.0012628	-0.81002	-0.00091422	1128.6375681611678	115.53	1.1718	116.22	115.47	116.64	0.68999					31	22	2	0	0	0	0.92957	1	43708	43708		3.2813	0	1	6824500	+		7778	18223	5545	5595	7569	7569					0.07116201909047959
EAQSVSFPY	9	Unmodified	_EAQSVSFPY_					0	0	0			REV__ENST00000589955.2_1_18:60984877-60985099:-|nuORF	REV__ENST00000589955.2_1_18:60984877-60985099:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	514.9246215820312	2	514.24019	1026.46583	-1.2025	-0.00061835	-1.2354	-0.00063531	-2.4379	-0.0012537	514.2395728421805	56.785	0.45883	57.535	57.408	57.867	0.75015					11	8	2	0	0	0	0.58271	1	21422	21422		10.074	0	1	1086900	+		7779	26427	5546	5596	7570	7570					-0.046348155816986036
EAQVICAGLY	10	Unmodified	_EAQVICAGLY_					0	0	0			REV__nc|ENSG00000172159|A2A2Y4-5|FRMD3	REV__nc|ENSG00000172159|A2A2Y4-5|FRMD3	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1654052734375	2	533.765517	1065.51648	-0.60031	-0.00032042	-0.29088	-0.00015526	-0.89119	-0.00047569	533.7652996997905	85.528	0.55826	86.264	85.933	86.492	0.73601					26	10	3	0	0	0	0.92514	1	32446	32446		8.1555	4.559	1	7267200	+		7780	21125	5547	5597	7571	7571					-0.013656095283522518
EARADWSG	8	Unmodified	_EARADWSG_					0	0	0		ENSG00000105509|ENST00000540069|HAS1;nc|ENSG00000105509|Q92839|HAS1	ENSG00000105509|ENST00000540069|HAS1	ENSG00000105509|ENST00000540069|HAS1	MSMS	A375_MHC_IP_R2	2	446.1716003417969	2	446.201399	890.388245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.56	1	141.6	141.1	142.1	0.04216								0	0	0	0.16876	1	55365	55365		2.3027	0	1				7781	2613	5548	5598	7572	7572					-0.06133408727237111
EARAQREECW	10	Unmodified	_EARAQREECW_					0	0	0			REV__ENSG00000166189|ENST00000299238|HPS6	REV__ENSG00000166189|ENST00000299238|HPS6	MSMS	A375_MHC_IP_R1	1	426.6334228515625	3	426.527899	1276.56187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.756	1	24.756	24.256	25.256	0								0	0	0	0.15479	1	7102	7102		2.8433	0.93691	1		+		7782	20660	5549	5599	7573	7573					-0.06534991013268154
EARARTRRH	9	Unmodified	_EARARTRRH_					0	0	0			REV__nc|ENSG00000131263|Q9NVW2-2|RLIM	REV__nc|ENSG00000131263|Q9NVW2-2|RLIM	MULTI-SECPEP	A375_MHC_IP_R2	2	384.2864074707031	3	384.88675	1151.63842	-0.10768	-4.1443E-05	1.2002	0.00046196	1.0926	0.00042051	384.88792252557386	27.698	0.45488	28.376	28.149	28.604	0.67857					10	8	2	0	0	0	0.75842	1	9426	9426		8.9762	3.9287	1	1178900	+		7783	18597	5550	5600	7574	7574					0.06866613388888254
EARDFQAARY	10	Unmodified	_EARDFQAARY_					0	0	0		ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-SECPEP	A375_MHC_IP_R1	1	409.9587097167969	3	409.535271	1225.58398	-0.14349	-5.8763E-05	-1.2617	-0.00051673	-1.4052	-0.00057549	409.53481080721576	24.622	0.45508	24.622	24.498	24.953	0					12	8	2	0	0	0	0.92957	1	6973	6973		5.7834	1.0675	1	3680300			7784	6530	5551	5601	7575	7575					-0.019784432731967172
EARGASSD	8	Unmodified	_EARGASSD_					0	0	0		ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;ENST00000551127.5_1_12:113730719-113733878:+|nuORF;ENST00000552077.5_1_12:113726380-113733878:+|nuORF	ENSG00000186815|ENST00000335509|TPCN1	ENSG00000186815|ENST00000335509|TPCN1	MSMS	A375_MHC_IP_R1	1	396.65203857421875	2	396.677756	791.34096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.701	1	43.701	43.201	44.201	0								0	0	0	0.16876	1	15209	15209		7.2892	0	1				7785	8779	5552	5602	7576	7576					-0.06305687998235499
EARIKKLFR	9	Unmodified	_EARIKKLFR_					0	0	0		ENSG00000132840|ENST00000255192|BHMT2	ENSG00000132840|ENST00000255192|BHMT2	ENSG00000132840|ENST00000255192|BHMT2	MULTI-MSMS	A375_MHC_IP_R2	2	387.980224609375	3	387.580264	1159.71896	-0.42077	-0.00016308	0.17275	6.6953E-05	-0.24802	-9.6129E-05	387.5803912900419	19.147	0.70667	19.751	19.483	20.19	0.60308					25	13	3	0	0	0	0.73141	1	5902	5902		4.1895	0.31317	1	4240000			7786	4456	5553	5603	7577	7577					0.14549081659220064
EARKERLGWRY	11	Unmodified	_EARKERLGWRY_					0	0	0			REV__WDR59|p.H928Tfs*12|1|0.43|ENSG00000103091|chr16:74874353-74874353|A/-|frameshift_variant;REV__nc|ENSG00000103091|Q6PJI9-4|WDR59	REV__nc|ENSG00000103091|Q6PJI9-4|WDR59	MULTI-MSMS	A375_MHC_IP_R1	1	488.99969482421875	3	488.600386	1462.77933	-0.27186	-0.00013283	-0.81482	-0.00039812	-1.0867	-0.00053095	488.59983856196015	52.312	0.55874	52.312	51.982	52.541	0					19	10	3	0	0	0	0.73818	1	18628	18628		1.1098	0.096179	1	3554700	+		7787	17252;27155	5554	5604	7578	7578					0.06645147251651906
EARKERLGWRY	11	Unmodified	_EARKERLGWRY_					0	0	0			REV__WDR59|p.H928Tfs*12|1|0.43|ENSG00000103091|chr16:74874353-74874353|A/-|frameshift_variant;REV__nc|ENSG00000103091|Q6PJI9-4|WDR59	REV__nc|ENSG00000103091|Q6PJI9-4|WDR59	MULTI-SECPEP	A375_MHC_IP_R1	1	488.46954345703125	3	488.600386	1462.77933	-0.27186	-0.00013283	-0.81482	-0.00039812	-1.0867	-0.00053095	488.59983856196015	52.312	0.55874	52.312	51.982	52.541	0					19	10	3	0	0	0	0.99971	1	18579	18579		3.8459	3.7726	1	3554700	+		7788	17252;27155	5554	5604	7579	7579					0.06645147251651906
EARKERLGWRY	11	Unmodified	_EARKERLGWRY_					0	0	0			REV__WDR59|p.H928Tfs*12|1|0.43|ENSG00000103091|chr16:74874353-74874353|A/-|frameshift_variant;REV__nc|ENSG00000103091|Q6PJI9-4|WDR59	REV__nc|ENSG00000103091|Q6PJI9-4|WDR59	MULTI-SECPEP	A375_MHC_IP_R2	2	488.4692077636719	3	488.600386	1462.77933	-0.78892	-0.00038547	-0.75646	-0.00036961	-1.5454	-0.00075507	488.6000277298644	51.543	0.40539	52.296	52.068	52.473	0.75225					17	7	3	0	0	0	0.99916	1	19421	19421		2.4348	1.325	1	3313700	+		7789	17252;27155	5554	5604	7580	7580					0.06645147251651906
EARKERRFTRA	11	Unmodified	_EARKERRFTRA_					0	0	0			REV__nc|ENSG00000164362|O14746-4|TERT	REV__nc|ENSG00000164362|O14746-4|TERT	MULTI-MSMS	A375_MHC_IP_R1	1	474.66998291015625	3	473.935769	1418.78548	-0.72856	-0.00034529	-0.31035	-0.00014708	-1.0389	-0.00049237	473.9354160962524	132.92	1.5307	132.92	132.49	134.02	0					81	29	3	0	0	0	0.7342	1	51479	51479		2.2527	0.79761	1	44280000	+		7790	20489	5555	5605	7581	7581					0.0928366548316717
EARKSQPDES	10	Unmodified	_EARKSQPDES_					0	0	0		ENSG00000164715|ENST00000297293|LMTK2	ENSG00000164715|ENST00000297293|LMTK2	ENSG00000164715|ENST00000297293|LMTK2	MULTI-MSMS	A375_MHC_IP_R1	1	383.58673095703125	3	382.851036	1145.53128	0.57949	0.00022186	-0.5336	-0.00020429	0.045888	1.7568E-05	382.8502896590696	22.815	0.75664	22.815	22.419	23.176	0					41	14	4	0	0	0	0.71564	1	6096	6096		2.8433	0	1	2649900			7791	6871	5556	5606	7582	7582					-0.03566446126660594
EARLGAAF	8	Unmodified	_EARLGAAF_					0	0	0		DHX16|p.S338F|1|0.74|ENSG00000204560|chr6:30665183-30665183|G/A|missense_variant	DHX16|p.S338F|1|0.74|ENSG00000204560|chr6:30665183-30665183|G/A|missense_variant	DHX16|p.S338F|1|0.74|ENSG00000204560|chr6:30665183-30665183|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	418.2785339355469	2	417.727052	833.439552	0.17664	7.3789E-05	-0.032517	-1.3583E-05	0.14413	6.0206E-05	417.7269767510691	34.149	0.65697	34.149	33.748	34.405	0					26	12	3	0	0	0	0.7256	1	11307	11307		26.884	0	1	4335700			7792	740	5557	5607	7583	7583					0.016169600374610127
EARLQGVYH	9	Unmodified	_EARLQGVYH_					0	0	0			REV__ENST00000507575.5_1_5:177558043-177570729:+|nuORF	REV__ENST00000507575.5_1_5:177558043-177570729:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	357.9537658691406	3	358.189324	1071.54614	0.11663	4.1776E-05	2.3288	0.00083416	2.4455	0.00087594	358.52556287559054	39.414	0.45652	39.414	39.085	39.541	0					14	8	3	0	0	0	0.4261	1	13457	13457		22.658	16.028	1	1677100	+		7793	19503	5558	5608	7584	7584					0.01323090531991511
EARPLPGFA	9	Unmodified	_EARPLPGFA_					0	0	0			REV__ENSG00000180318|ENST00000316824|ALX1	REV__ENSG00000180318|ENST00000316824|ALX1	MSMS	A375_MHC_IP_R2	2	479.464111328125	2	479.261259	956.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.194	1	55.944	55.444	56.444	0.75075								0	0	0	0.15486	1	20846	20846		12.241	0.60036	1		+		7794	21604	5559	5609	7585	7585					0.02797204617331772
EARPVGQY	8	Unmodified	_EARPVGQY_					0	0	0			REV__ENSG00000158715|ENST00000367145|SLC45A3	REV__ENSG00000158715|ENST00000367145|SLC45A3	MULTI-MSMS	A375_MHC_IP_R1	1	460.6353454589844	2	460.235242	918.45593	-0.12764	-5.8745E-05	0.43844	0.00020179	0.3108	0.00014304	460.2352462711829	35.09	0.96836	35.09	34.81	35.778	0					28	18	2	0	0	0	0.77515	1	11788	11788		12.532	2.3482	1	4220400	+		7795	20089	5560	5610	7586	7586					-0.006559587964261482
EARQKKMYYLR	11	Unmodified	_EARQKKMYYLR_					0	0	0		ENSG00000171467|ENST00000361428|ZNF318;nc|ENSG00000171467|Q5VUA4-2|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	MULTI-SECPEP	A375_MHC_IP_R1	1	496.35833740234375	3	495.938011	1484.7922	-0.63143	-0.00031315	0.58829	0.00029175	-0.043143	-2.1396E-05	495.9382413081909	132.67	0.76099	132.67	132.13	132.89	0					22	14	2	0	0	0	1.0011	1	51107	51107		1.3296	0	1	7334500			7796	7603	5561	5611	7587	7587					0.0691984231953029
EARQKKMYYLR	11	Unmodified	_EARQKKMYYLR_					0	0	0		ENSG00000171467|ENST00000361428|ZNF318;nc|ENSG00000171467|Q5VUA4-2|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	MULTI-SECPEP	A375_MHC_IP_R2	2	495.68646240234375	3	495.938011	1484.7922	-0.39103	-0.00019393	0.68986	0.00034213	0.29882	0.0001482	495.9383049223336	133.41	0.6076	133.58	133.3	133.91	0.16487					37	11	4	0	0	0	1.0012	1	52390	52390		1.2148	0.70888	1	5945000			7797	7603	5561	5611	7588	7588					0.0691984231953029
EARVNLDAF	9	Unmodified	_EARVNLDAF_					0	0	0			REV__tr|U7ST86|U7ST86_FUSNUATP-dependentDNAhelicaseDinGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01328PE=3SV=1	REV__tr|U7ST86|U7ST86_FUSNUATP-dependentDNAhelicaseDinGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01328PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	517.6923217773438	2	517.766906	1033.51926	-0.67117	-0.00034751	0.30289	0.00015682	-0.36828	-0.00019068	517.7671287068694	46.084	0.30372	46.849	46.654	46.957	0.76519					8	5	2	0	0	0	0.67483	1	17210	17210		14.838	4.0388	1	1588800	+		7798	28462	5562	5612	7589	7589					0.0038398192079966975
EARVRGGPVS	10	Unmodified	_EARVRGGPVS_					0	0	0		ENST00000422647.5_1_7:99156430-99158253:+|nuORF	ENST00000422647.5_1_7:99156430-99158253:+|nuORF	ENST00000422647.5_1_7:99156430-99158253:+|nuORF	MSMS	A375_MHC_IP_R2	2	514.2130126953125	2	514.285797	1026.55704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.012	1	74.75	74.25	75.25	0.73752								0	0	0	0.14983	1	28091	28091		18.146	1.2041	1				7799	11747	5563	5613	7590	7590					0.044824929062770025
EARYDPSL	8	Unmodified	_EARYDPSL_					0	0	0		ENSG00000178538|ENST00000317995|CA8;ENST00000529918.1_1_8:61178441-61193874:-|nuORF	ENSG00000178538|ENST00000317995|CA8	ENSG00000178538|ENST00000317995|CA8	MULTI-SECPEP	A375_MHC_IP_R2	2	475.4742431640625	2	475.732532	949.45051	-0.54304	-0.00025834	-0.44327	-0.00021088	-0.98631	-0.00046922	475.7323541532098	31.913	0.40467	32.65	32.453	32.857	0.73691					11	7	2	0	0	0	0.95423	1	11302	11302		12.532	0	1	730280			7800	8164	5564	5614	7591	7591					-0.026236823789190566
EARYKIKNK	9	Unmodified	_EARYKIKNK_					0	0	0			REV__nc|ENSG00000196586|Q9UM54-5|MYO6	REV__nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-MSMS	A375_MHC_IP_R2	2	384.2864074707031	3	383.89614	1148.66659	-0.37459	-0.0001438	0.33069	0.00012695	-0.043901	-1.6853E-05	383.89633340633634	33.264	1.7264	34.016	33.127	34.853	0.75225					96	33	6	0	0	0	0.70411	1	11729	11729		6.6304	0.43853	1	249350000	+		7801	22211	5565	5615	7592	7592					0.09820498525596122
EASAKHHTL	9	Unmodified	_EASAKHHTL_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MULTI-SECPEP	A375_MHC_IP_R2	2	497.6566467285156	2	497.259248	992.503943	-0.43408	-0.00021585	1.0777	0.00053589	0.64361	0.00032004	497.256865505922	63.702	1.3208	64.442	63.734	65.054	0.74022					41	25	3	0	0	0	0.69507	1	24252	24252		5.7319	0	1	2161800	+		7802	18661	5566	5616	7593	7593					0.007391151236220139
EASAYGDF	8	Unmodified	_EASAYGDF_					0	0	0		ENSG00000165462|ENST00000298231|PHOX2A	ENSG00000165462|ENST00000298231|PHOX2A	ENSG00000165462|ENST00000298231|PHOX2A	MULTI-SECPEP	A375_MHC_IP_R1	1	859.5282592773438	1	859.346839	858.339563	-0.27021	-0.00023221	-0.22306	-0.00019169	-0.49327	-0.00042389	859.3465500160435	63.528	0.86867	63.528	63.121	63.99	0					31	16	3	0	0	0	0.92636	1	23085	23085		23.148	0	1	7179000			7803	6954	5567	5617	7594	7594					-0.09527322087001266
EASDKLTFY	9	Unmodified	_EASDKLTFY_					0	0	0		ENSG00000198756|ENST00000361927|COLGALT2	ENSG00000198756|ENST00000361927|COLGALT2	ENSG00000198756|ENST00000361927|COLGALT2	MULTI-MSMS	A375_MHC_IP_R2	2	537.69482421875	2	537.261122	1072.50769	-1.129	-0.00060659	1.3472	0.00072381	0.21818	0.00011722	537.2608664186625	41.014	0.407	41.788	41.59	41.997	0.77451					14	7	3	0	0	0	0.6324	1	15213	15213		13.042	1.4022	1	1176900			7804	9319	5568	5618	7595	7595					-0.02566259893183087
EASEQKQFHV	10	Unmodified	_EASEQKQFHV_					0	0	0			REV__ENSG00000186288|ENST00000373519|PABPC1L2A	REV__ENSG00000186288|ENST00000373519|PABPC1L2A	MULTI-MSMS	A375_MHC_IP_R1	1	401.92706298828125	3	401.531527	1201.57275	-0.41756	-0.00016766	0.3488	0.00014005	-0.068761	-2.761E-05	401.53153370332626	28.212	0.80851	28.212	27.987	28.795	0					25	15	2	0	0	0	0.70496	1	8602	8602		8.9762	3.9287	1	4419800	+		7805	21816	5569	5619	7596	7596					-0.019972653673448804
EASERRSL	8	Unmodified	_EASERRSL_					0	0	0		ARHGAP29|p.S1144L|1|0.39|ENSG00000137962|chr1:94174224-94174224|G/A|missense_variant	ARHGAP29|p.S1144L|1|0.39|ENSG00000137962|chr1:94174224-94174224|G/A|missense_variant	ARHGAP29|p.S1144L|1|0.39|ENSG00000137962|chr1:94174224-94174224|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	474.1459655761719	2	474.24888	946.483208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.844	1	49.601	49.101	50.101	0.75737								0	0	0	0.16876	1	18344	18344		32.117	0	1				7806	174	5570	5620	7597	7597					0.007825247439541272
EASEVDSEG	9	Unmodified	_EASEVDSEG_					0	0	0		ENST00000480219.1_1_1:155231512-155232061:-|nuORF	ENST00000480219.1_1_1:155231512-155232061:-|nuORF	ENST00000480219.1_1_1:155231512-155232061:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	922.7635498046875	1	922.363612	921.356335	-0.42351	-0.00039063	0.47731	0.00044026	0.053807	4.9629E-05	922.3640973224126	51.055	0.50586	51.809	51.564	52.07	0.75406					13	9	2	0	0	0	0.4867	1	19299	19299		20.454	5.6154	1	1761600			7807	12493	5571	5621	7598	7598					-0.10748865991695311
EASEVDSEG	9	Unmodified	_EASEVDSEG_					0	0	0		ENST00000480219.1_1_1:155231512-155232061:-|nuORF	ENST00000480219.1_1_1:155231512-155232061:-|nuORF	ENST00000480219.1_1_1:155231512-155232061:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	922.363612	921.356335	0.088791	8.1897E-05	0.69723	0.0006431	0.78602	0.000725	922.3642407220149	51.722	0.56021	51.722	51.525	52.085	0	-0.043762	0.00014496	NaN	20.454	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2082000			7808	12493	5571	5621							-0.10748865991695311
EASGKYGGGVP	11	Unmodified	_EASGKYGGGVP_					0	0	0		ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	MULTI-SECPEP	A375_MHC_IP_R2	2	511.1781921386719	2	511.251089	1020.48762	-1.0707	-0.00054737	-0.5557	-0.0002841	-1.6264	-0.00083148	511.250726077391	33.351	0.35612	34.104	33.942	34.298	0.75225					9	6	2	0	0	0	0.65968	1	11960	11960		28.495	2.2264	1	863470			7809	9938	5572	5622	7599	7599					-0.021800108331376578
EASGLGSF	8	Unmodified	_EASGLGSF_					0	0	0		ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	MULTI-MSMS	A375_MHC_IP_R2	2	767.7562255859375	1	767.35701	766.349734	-0.99433	-0.00076301	0.44148	0.00033878	-0.55285	-0.00042423	767.3571490966524	62.547	0.50766	63.29	62.976	63.484	0.74263					15	9	2	0	0	0	0.28202	1	23690	23690		60.39	5.616	1	2133700			7810	9315	5573	5623	7600	7600					-0.042787143617488255
EASGLGSF	8	Unmodified	_EASGLGSF_					0	0	0		ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	MULTI-MATCH	A375_MHC_IP_R1	1		1	767.35701	766.349734	-0.43073	-0.00033053	-0.081304	-6.2389E-05	-0.51204	-0.00039292	767.356795885945	63.402	0.45921	63.402	63.121	63.58	0	0.056136	-8.3917E-05	NaN	60.39	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2357600			7811	9315	5573	5623							-0.042787143617488255
EASGLVCMSFA	11	Unmodified	_EASGLVCMSFA_					0	0	0		ENST00000246190.10_2_20:32245006-32245126:-|nuORF	ENST00000246190.10_2_20:32245006-32245126:-|nuORF	ENST00000246190.10_2_20:32245006-32245126:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	557.6921997070312	2	557.74901	1113.48347	-1.1863	-0.00066167	0.16812	9.3766E-05	-1.0182	-0.0005679	557.749131129332	56.887	0.3563	57.637	57.459	57.815	0.75015					11	6	2	0	0	0	0.67989	1	21450	21450		17.113	1.2657	1	2304000			7812	10187	5574	5624	7601	7601					-0.0687355964271319
EASGPLGSAQL	11	Unmodified	_EASGPLGSAQL_					0	0	0			REV__nc|ENSG00000197530|Q96AX9-10|MIB2	REV__nc|ENSG00000197530|Q96AX9-10|MIB2	MSMS	A375_MHC_IP_R1	1	515.2205200195312	2	515.264196	1028.51384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.99	1	35.99	35.49	36.49	0								0	0	0	0.15377	1	12010	12010		18.146	1.2041	1		+		7813	22294	5575	5625	7602	7602					0.0007225833833217621
EASHRNQL	8	Unmodified	_EASHRNQL_					0	0	0		ENSG00000267796|ENST00000301159|LIN37;ENST00000587108.5_1_19:36245240-36245372:+|nuORF;ENST00000595455.1_1_19:36244761-36245372:+|nuORF	ENSG00000267796|ENST00000301159|LIN37	ENSG00000267796|ENST00000301159|LIN37	MULTI-SECPEP	A375_MHC_IP_R2	2	478.1409912109375	2	477.741222	953.467892	-0.32544	-0.00015547	0.19603	9.3651E-05	-0.12941	-6.1824E-05	477.7413088073954	100.17	0.56012	100.94	100.63	101.19	0.76278					19	10	2	0	0	0	0.84748	1	37987	37987		36.044	36.044	1	1737700			7814	9966	5576	5626	7603	7603					-0.010703420532536256
EASKKILEY	9	Unmodified	_EASKKILEY_					0	0	0		nc|ENSG00000174527|Q8N1T3-3|MYO1H;nc|ENSG00000174527|Q8N1T3|MYO1H;ENSG00000174527|ENST00000310903|MYO1H	nc|ENSG00000174527|Q8N1T3-3|MYO1H	nc|ENSG00000174527|Q8N1T3-3|MYO1H	MULTI-MSMS	A375_MHC_IP_R1	1	541.2000122070312	2	540.800414	1079.58628	-0.76902	-0.00041589	-0.26159	-0.00014147	-1.0306	-0.00055735	540.8002158289994	28.128	0.40295	28.128	27.987	28.39	0					12	7	2	0	0	0	0.22528	1	8669	8669		36.127	3.3413	1	2028500			7815	7890	5577	5627	7604	7604					0.04966592411892634
EASKLSSQIKY	11	Unmodified	_EASKLSSQIKY_					0	0	0		ENSG00000078114|ENST00000377122|NEBL	ENSG00000078114|ENST00000377122|NEBL	ENSG00000078114|ENST00000377122|NEBL	MULTI-MSMS	A375_MHC_IP_R1	1	418.9626159667969	3	418.562715	1252.66632	0.24572	0.00010285	-0.29227	-0.00012233	-0.046547	-1.9483E-05	418.5625950285258	20.46	0.86441	20.46	19.928	20.793	0					40	16	3	0	0	0	0.73239	1	5172	5172		6.6235	6.6235	1	11678000			7816	1667	5578	5628	7605	7605					0.050090340150973134
EASKLSSQIKY	11	Unmodified	_EASKLSSQIKY_					0	0	0		ENSG00000078114|ENST00000377122|NEBL	ENSG00000078114|ENST00000377122|NEBL	ENSG00000078114|ENST00000377122|NEBL	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	418.562715	1252.66632	0.24572	0.00010285	-0.29227	-0.00012233	-0.046547	-1.9483E-05	418.5625950285258	20.46	0.86441	20.46	19.928	20.793	0	0	0	NaN	6.6235	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11678000			7817	1667	5578	5628							0.050090340150973134
EASLSLNTIF	10	Unmodified	_EASLSLNTIF_					0	0	0		ENSG00000214929|ENST00000344803|SPATA31D1;ENSG00000189357|ENST00000419782|SPATA31D4;ENSG00000186788|ENST00000445385|SPATA31D3	ENSG00000214929|ENST00000344803|SPATA31D1;ENSG00000189357|ENST00000419782|SPATA31D4	ENSG00000189357|ENST00000419782|SPATA31D4	MULTI-SECPEP	A375_MHC_IP_R1	1	547.669677734375	2	547.790047	1093.56554	-0.36079	-0.00019764	-2.3495	-0.001287	-2.7102	-0.0014846	547.7885759016519	72.228	0.65765	72.228	71.917	72.575	0					13	12	2	0	0	0	0.83086	1	26333	26333		6.7232	0	1	1149400			7818	8775;9630	5579	5629	7606	7606					0.022500020322468117
EASNSACIDPK	11	Unmodified	_EASNSACIDPK_					0	0	0			REV__ENSG00000173769|ENST00000309765|TOPAZ1	REV__ENSG00000173769|ENST00000309765|TOPAZ1	MULTI-MSMS	A375_MHC_IP_R1	1	568.1585693359375	2	567.75842	1133.50229	-0.36653	-0.0002081	0.62483	0.00035475	0.2583	0.00014665	567.7585895668151	59.378	1.3722	59.378	58.685	60.057	0					43	26	2	0	0	0	0.63523	1	21290	21290		20.581	2.2078	1	1977300	+		7819	21247	5580	5630	7607	7607					-0.05912306747313778
EASPISKTL	9	Unmodified	_EASPISKTL_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	A375_MHC_IP_R2	2	472.6892395019531	2	473.266207	944.517862	-0.77641	-0.00036745	-0.86005	-0.00040703	-1.6365	-0.00077448	473.2659157483765	41.212	0.91573	41.986	41.743	42.659	0.77451					44	17	4	0	0	0	0.34746	1	15362	15362		31.268	3.6395	1	27310000	+		7820	19778	5581	5631	7608	7608					0.04338347832049294
EASPLPYGTVM	11	Unmodified	_EASPLPYGTVM_					0	0	0			REV__nc|ENSG00000237289|P12532-2|CKMT1A	REV__nc|ENSG00000237289|P12532-2|CKMT1A	MULTI-SECPEP	A375_MHC_IP_R1	1	388.92486572265625	3	388.858363	1163.55326	0.011105	4.3183E-06	0.47915	0.00018632	0.49025	0.00019064	388.8586433563983	23.405	0.45959	23.405	23.125	23.584	0					10	8	2	0	0	0	0.9889	1	6464	6464		2.2527	0	1	1831100	+		7821	27513	5582	5632	7609	7609					-0.021973577024937185
EASQHLSLY	9	Unmodified	_EASQHLSLY_					0	0	0			REV__nc|ENSG00000141258|O43147-5|SGSM2	REV__nc|ENSG00000141258|O43147-5|SGSM2	MULTI-MSMS	A375_MHC_IP_R1	1	524.6580810546875	2	524.258914	1046.50327	-0.37328	-0.0001957	-0.75561	-0.00039613	-1.1289	-0.00059183	524.2585121703546	54.511	0.65751	54.511	54.113	54.771	0					21	12	2	0	0	0	0.17338	1	19418	19418		39.95	3.8227	1	8920900	+		7822	19252	5583	5633	7610	7610					-0.018117243160759244
EASRGRQGQK	10	Unmodified	_EASRGRQGQK_					0	0	0			REV__nc|ENSG00000186575|P35240-10|NF2	REV__nc|ENSG00000186575|P35240-10|NF2	MULTI-SECPEP	A375_MHC_IP_R2	2	373.62884521484375	3	372.867132	1115.57957	0.017923	6.6828E-06	1.9114	0.00071268	1.9293	0.00071937	373.2023902743785	24.919	0.25444	25.563	25.414	25.668	0.64368					7	4	2	0	0	0	0.93194	1	8265	8265		1.4551	0	1	1890100	+		7823	27422	5584	5634	7611	7611					0.02640092303909114
EASSIPWY	8	Unmodified	_EASSIPWY_					0	0	0			REV__ENST00000446197.7_1_14:24584891-24586136:+|nuORF	REV__ENST00000446197.7_1_14:24584891-24586136:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	476.6606140136719	2	476.724175	951.433798	-0.68122	-0.00032476	0.82277	0.00039224	0.14155	6.7481E-05	476.7242779865362	50.661	0.65892	51.415	50.854	51.513	0.75406					18	12	2	0	0	0	0.77123	1	19064	19064		14.582	14.582	1	1468200	+		7824	24852	5585	5635	7612	7612					-0.04386183264864485
EASSPSSQAPV	11	Unmodified	_EASSPSSQAPV_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.K10017Ifs*3|1|0.07|ENSG00000181143|chr19:8946720-8946721|-/A|frameshift_variant;MUC16|p.L10196Yfs*32|1|0.2|ENSG00000181143|chr19:8946183-8946183|A/-|frameshift_variant;MUC16|p.N7637Ifs*2|1|0.95|ENSG00000181143|chr19:8953860-8953860|T/-|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MSMS	A375_MHC_IP_R1	1	530.1483764648438	2	530.251286	1058.48802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.907	1	74.907	74.407	75.407	0								0	0	0	0.16138	1	27287	27287		11.495	1.3113	1				7825	8335	5586	5636	7613	7613					-0.038886359039452145
EASVSFHLAIS	11	Unmodified	_EASVSFHLAIS_					0	0	0			REV__ENST00000504156.5_1_5:140053622-140053814:-|nuORF	REV__ENST00000504156.5_1_5:140053622-140053814:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	387.3082275390625	3	387.536389	1159.58734	-0.56486	-0.0002189	0.33947	0.00013156	-0.22539	-8.7347E-05	387.5363711191321	25.011	0.40746	25.655	25.414	25.822	0.64368					13	7	2	0	0	0	0.99424	1	8291	8291		2.2527	0.51045	1	1305600	+		7826	25525	5587	5637	7614	7614					0.013928067807910338
EASYPGQDRW	10	Unmodified	_EASYPGQDRW_					0	0	0		nc|ENSG00000188833|Q5MY95-2|ENTPD8;ENSG00000188833|ENST00000371506|ENTPD8	nc|ENSG00000188833|Q5MY95-2|ENTPD8	nc|ENSG00000188833|Q5MY95-2|ENTPD8	MULTI-MSMS	A375_MHC_IP_R2	2	604.742919921875	2	604.770177	1207.5258	-0.451	-0.00027275	-0.68533	-0.00041447	-1.1363	-0.00068722	604.7699008987889	30.463	0.55443	31.182	30.962	31.517	0.71857					20	10	3	0	0	0	0.69306	1	10686	10686		13.906	0	1	3286500			7827	8942	5588	5638	7615	7615					-0.06966124918471905
EATASKVIV	9	Unmodified	_EATASKVIV_					0	0	0		ENSG00000132182|ENST00000254508|NUP210;NUP210|p.A1580V|1|0.43|ENSG00000132182|chr3:13323338-13323338|G/A|missense_variant	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MSMS	A375_MHC_IP_R2	2	459.2889099121094	2	459.26875	916.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.391	1	35.143	34.643	35.643	0.75225								0	0	0	0.15411	1	12400	12400		14.838	2.3067	1				7828	4379	5589	5639	7616	7616					0.06134651694662807
EATEEHQGE	9	Unmodified	_EATEEHQGE_					0	0	0		ENST00000416020.1_3_X:151091961-151091997:+|nuORF;chrX:153182249-153182325|245|57.17|0.16|8.47|+|1|MAGEA1,MAGEA1|1;ENST00000431963.5_3_X:151091961-151092144:+|nuORF;ENST00000356661.6_1_X:152482999-152483185:-|nuORF	ENST00000416020.1_3_X:151091961-151091997:+|nuORF	ENST00000416020.1_3_X:151091961-151091997:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	515.244384765625	2	515.209618	1028.40468	-0.92682	-0.00047751	-1.0195	-0.00052523	-1.9463	-0.0010027	515.2090994322824	65.649	0.4566	66.387	66.018	66.475	0.73811					11	8	2	0	0	0	0.6324	1	24821	24821		13.042	2.9685	1	1321200			7829	525	5590	5640	7617	7617					-0.108383723517818
EATELRPEI	9	Unmodified	_EATELRPEI_					0	0	0			REV__ZNF646|p.Y1540Sfs*8|1|0.42|ENSG00000167395|chr16:31080943-31080943|A/-|frameshift_variant	REV__ZNF646|p.Y1540Sfs*8|1|0.42|ENSG00000167395|chr16:31080943-31080943|A/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	529.2241821289062	2	529.279846	1056.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.795	1	80.795	80.295	81.295	0								0	0	0	0.14677	1	29518	29518		26.884	1.4843	1		+		7830	20756	5591	5641	7618	7618					0.019128313724195323
EATENNVAW	9	Unmodified	_EATENNVAW_					0	0	0		ENST00000557584.5_1_14:74417012-74426158:+|nuORF;nc|ENSG00000119723|Q9Y2Z9-2|COQ6;nc|ENSG00000119723|Q9Y2Z9-3|COQ6;ENSG00000119723|ENST00000334571|COQ6;ENST00000553448.1_1_14:74425667-74426246:+|nuORF	ENST00000557584.5_1_14:74417012-74426158:+|nuORF	ENST00000557584.5_1_14:74417012-74426158:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	517.6813354492188	2	517.232896	1032.45124	-0.45411	-0.00023488	-0.3787	-0.00019588	-0.83281	-0.00043076	517.2327468848099	88.338	0.81606	88.338	87.898	88.714	0					35	15	4	0	0	0	0.63811	3	32313	32313;32534;32553		12.532	7.9102	1	6908600			7831	13454	5592	5642	7619;7620;7621	7619					-0.06368887729877315
EATENNVAW	9	Unmodified	_EATENNVAW_					0	0	0		ENST00000557584.5_1_14:74417012-74426158:+|nuORF;nc|ENSG00000119723|Q9Y2Z9-2|COQ6;nc|ENSG00000119723|Q9Y2Z9-3|COQ6;ENSG00000119723|ENST00000334571|COQ6;ENST00000553448.1_1_14:74425667-74426246:+|nuORF	ENST00000557584.5_1_14:74417012-74426158:+|nuORF	ENST00000557584.5_1_14:74417012-74426158:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	517.232896	1032.45124	-0.65652	-0.00033957	0.13991	7.2367E-05	-0.51661	-0.00026721	517.2328478337687	87.616	0.90962	88.348	88.016	88.925	0.7318	0.0052139	0.0003076	NaN	12.532	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6294800			7832	13454	5592	5642							-0.06368887729877315
EATEWKGWHG	10	Unmodified	_EATEWKGWHG_					0	0	0			REV__ENST00000487755.1_1_1:155939942-155940101:-|nuORF	REV__ENST00000487755.1_1_1:155939942-155940101:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	401.253173828125	3	400.8526	1199.53597	-0.087031	-3.4887E-05	1.6997	0.00068134	1.6127	0.00064645	400.8529142210814	21.046	1.2202	21.046	20.742	21.962	0					42	23	3	0	0	0	0.93799	1	5465	5465		0.62683	0	1	2779000	+		7833	25338	5593	5643	7622	7622					-0.055815171932636076
EATGGSGKQVV	11	Unmodified	_EATGGSGKQVV_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000024146	REV__CON__ENSEMBL:ENSBTAP00000024146	MULTI-MSMS	A375_MHC_IP_R2	2	516.6619262695312	2	516.769645	1031.52474	-1.0365	-0.00053563	0.70839	0.00036608	-0.32809	-0.00016955	516.7681620076795	23.518	0.70838	24.148	23.777	24.485	0.63014					33	13	4	0	0	0	0.73378	1	7478	7478		5.2969	0.066215	1	4314700	+	+	7834	15843	5594	5644	7623	7623					0.010236607126216768
EATGSLPLSF	10	Unmodified	_EATGSLPLSF_					0	0	0			REV__ENST00000466741.5_1_1:111772359-111772476:+|nuORF	REV__ENST00000466741.5_1_1:111772359-111772476:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	511.3131103515625	2	511.263665	1020.51278	-1.1751	-0.00060079	0.39804	0.0002035	-0.77707	-0.00039729	511.26378694844635	56.984	1.1718	57.734	57	58.172	0.75015					53	22	4	0	0	0	0.33603	1	21405	21405		37.974	7.3375	1	22259000	+		7835	25042	5595	5645	7624	7624					0.003340439694397901
EATILEGIKY	10	Unmodified	_EATILEGIKY_					0	0	0		tr|U7T3K3|U7T3K3_FUSNUMATEeffluxfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00335PE=4SV=1	tr|U7T3K3|U7T3K3_FUSNUMATEeffluxfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00335PE=4SV=1	tr|U7T3K3|U7T3K3_FUSNUMATEeffluxfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00335PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	569.2131958007812	2	568.813522	1135.61249	-0.20718	-0.00011784	-0.052837	-3.0054E-05	-0.26001	-0.0001479	568.8135657035037	56.446	0.45569	56.446	56.194	56.65	0					15	8	2	0	0	0	0.48529	1	20220	20220		29.082	6.3453	1	4312500			7836	29977	5596	5646	7625	7625					0.05010861583377846
EATILEGIKY	10	Unmodified	_EATILEGIKY_					0	0	0		tr|U7T3K3|U7T3K3_FUSNUMATEeffluxfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00335PE=4SV=1	tr|U7T3K3|U7T3K3_FUSNUMATEeffluxfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00335PE=4SV=1	tr|U7T3K3|U7T3K3_FUSNUMATEeffluxfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00335PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	568.673828125	2	568.813522	1135.61249	-0.41947	-0.0002386	-0.15798	-8.9862E-05	-0.57746	-0.00032846	568.8132947153931	55.566	0.5567	56.317	55.933	56.489	0.75075					20	10	3	0	0	0	0.64716	1	21043	21043		36.127	1.7253	1	5166800			7837	29977	5596	5646	7626	7626					0.05010861583377846
EATKARLSF	9	Unmodified	_EATKARLSF_					0	0	0		MYOC|p.S94F|1|0.72|ENSG00000034971|chr1:171652331-171652331|G/A|missense_variant	MYOC|p.S94F|1|0.72|ENSG00000034971|chr1:171652331-171652331|G/A|missense_variant	MYOC|p.S94F|1|0.72|ENSG00000034971|chr1:171652331-171652331|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	511.13470458984375	2	511.785099	1021.55564	-0.48829	-0.0002499	-1.0821	-0.00055379	-1.5704	-0.00080369	511.7845684203997	57.999	0.60901	57.999	57.669	58.278	0					17	11	2	0	0	0	0.53748	1	20815	20815		13.042	0	1	964900			7838	14441	5597	5647	7627	7627					0.045728588175165896
EATLRRSV	8	Unmodified	_EATLRRSV_					0	0	0			REV__LSMEM1|p.D93N|1|0.08|ENSG00000181016|chr7:112489830-112489830|G/A|missense_variant	REV__LSMEM1|p.D93N|1|0.08|ENSG00000181016|chr7:112489830-112489830|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	466.6583251953125	2	466.269616	930.524678	-0.20724	-9.6629E-05	-1.8265	-0.00085164	-2.0337	-0.00094827	466.26904668185654	100.91	0.40515	100.91	100.69	101.09	0					10	7	2	0	0	0	0.94479	1	37093	37093		13.508	13.508	1	569850	+		7839	21633	5598	5648	7628	7628					0.056637055032865646
EATNNPRLSY	10	Unmodified	_EATNNPRLSY_					0	0	0		ENSG00000173114|ENST00000308478|LRRN3	ENSG00000173114|ENST00000308478|LRRN3	ENSG00000173114|ENST00000308478|LRRN3	MULTI-SECPEP	A375_MHC_IP_R1	1	389.259765625	3	388.859643	1163.5571	0.22594	8.7861E-05	-0.13928	-5.4161E-05	0.086664	3.37E-05	388.8596151014511	33.923	0.50523	33.923	33.597	34.103	0					19	9	4	0	0	0	0.93041	1	11127	11127		11.518	1.3673	1	7421900			7840	7770	5599	5649	7629	7629					-0.018135518843791942
EATNVPAKL	9	Unmodified	_EATNVPAKL_					0	0	0			REV__ENST00000463330.5_1_10:127515162-127520177:+|nuORF	REV__ENST00000463330.5_1_10:127515162-127520177:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	473.3026123046875	2	471.766374	941.518196	-0.71894	-0.00033917	0.043528	2.0535E-05	-0.67541	-0.00031864	471.76634863330116	26.697	1.3618	26.697	26.373	27.735	0					66	26	4	0	0	0	0.65721	1	8103	8103		10.824	0.75	1	201500000	+		7841	17507	5600	5650	7630	7630					0.04509767551905952
EATPLLVSW	9	Unmodified	_EATPLLVSW_					0	0	0			REV__HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	REV__HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	508.72332763671875	2	508.276575	1014.5386	-0.81145	-0.00041244	1.1921	0.00060592	0.38064	0.00019347	508.27681132992245	96.509	0.5053	97.265	97.013	97.519	0.75586					12	9	2	0	0	0	0.58047	1	36591	36591		15.847	0.078963	1	486900	+		7842	18467	5601	5651	7631	7631					0.03190938211719185
EAVARIPPLRR	11	Unmodified	_EAVARIPPLRR_					0	0	0		ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	MULTI-MSMS	A375_MHC_IP_R1	1	639.7921752929688	2	639.39367	1276.77279	-1.0047	-0.00064242	-1.0163	-0.00064979	-2.021	-0.0012922	639.3927051003465	142.97	0.80881	142.97	142.49	143.29	0					30	15	3	0	0	0	0.73818	1	54819	54819		2.7352	1.2533	1	3786600			7843	1418	5602	5652	7632	7632					0.14547254090916795
EAVARIPPLRR	11	Unmodified	_EAVARIPPLRR_					0	0	0		ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	639.39367	1276.77279	-1.0047	-0.00064242	-1.0163	-0.00064979	-2.021	-0.0012922	639.3927051003465	142.97	0.80881	142.97	142.49	143.29	0	-0.015801	0.00025686	NaN	2.7352	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3786600			7844	1418	5602	5652							0.14547254090916795
EAVARIPPLRR	11	Unmodified	_EAVARIPPLRR_					0	0	0		ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	639.39367	1276.77279	-0.56649	-0.00036221	-1.3552	-0.00086654	-1.9217	-0.0012288	639.3926762585522	142.97	0.70773	143	142.64	143.34	0.030731	0.015801	-0.00017664	NaN	2.7352	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3327900			7845	1418	5602	5652							0.14547254090916795
EAVDGGWSGW	10	Unmodified	_EAVDGGWSGW_					0	0	0		ENSG00000136378|ENST00000388820|ADAMTS7;ENST00000568712.1_1_15:79063704-79103562:-|nuORF	ENSG00000136378|ENST00000388820|ADAMTS7	ENSG00000136378|ENST00000388820|ADAMTS7	MSMS	A375_MHC_IP_R1	1	532.1946411132812	2	532.227613	1062.44067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.698	1	87.698	87.198	88.198	0								0	0	0	0.15308	1	32184	32184		10.824	2.2306	1				7846	4782	5603	5653	7633	7633					-0.08804870384278729
EAVDTGRVL	9	Unmodified	_EAVDTGRVL_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MSMS	A375_MHC_IP_R2	2	480.30877685546875	2	480.261456	958.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.284	1	39.059	38.559	39.559	0.77451								0	0	0	0.14767	1	14074	14074		25.399	3.6527	1				7847	7807	5604	5654	7634	7634					0.027445795465155243
EAVEGVRYEP	10	Unmodified	_EAVEGVRYEP_					0	0	0			REV__ENSG00000204147|ENST00000647317|ASAH2B	REV__ENSG00000204147|ENST00000647317|ASAH2B	MULTI-SECPEP	A375_MHC_IP_R2	2	574.7138061523438	2	574.782753	1147.55095	-0.44894	-0.00025804	-1.4155	-0.00081359	-1.8644	-0.0010716	574.782247972544	38.908	0.25559	39.683	39.556	39.812	0.77451					6	4	2	0	0	0	0.89369	1	14378	14378		18.373	18.373	1	895780	+		7848	22100	5605	5655	7635	7635					-0.016920701159278906
EAVFSYLTGKR	11	Unmodified	_EAVFSYLTGKR_					0	0	0		nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948|NUP98	nc|ENSG00000110713|P52948-2|NUP98	nc|ENSG00000110713|P52948-2|NUP98	MSMS	A375_MHC_IP_R1	1	636.2400512695312	2	635.843145	1269.67174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.62	1	124.62	124.12	125.12	0								0	0	0	0.15759	1	47013	47013		15.739	1.3332	1				7849	2942	5606	5656	7636	7636					0.04768757597548756
EAVKTGNLNL	10	Unmodified	_EAVKTGNLNL_					0	0	0			REV__ENSG00000134013|ENST00000389131|LOXL2	REV__ENSG00000134013|ENST00000389131|LOXL2	MULTI-SECPEP	A375_MHC_IP_R1	1	529.96240234375	2	529.795663	1057.57677	-0.63878	-0.00033842	-1.7542	-0.00092937	-2.393	-0.0012678	529.7952541465976	36.264	0.76176	36.264	35.727	36.489	0					19	14	2	0	0	0	0.90513	1	12185	12185		8.1555	1.9497	1	1371500	+		7850	18746	5607	5657	7637	7637					0.05028824126384279
EAVQQVLEINL	11	Unmodified	_EAVQQVLEINL_					0	0	0			REV__ENST00000503808.5_1_4:57204874-57250274:-|nuORF	REV__ENST00000503808.5_1_4:57204874-57250274:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	628.7473754882812	2	628.34826	1254.68197	-0.64048	-0.00040244	-0.55087	-0.00034614	-1.1913	-0.00074858	628.3478484565029	61.009	0.50788	61.009	60.719	61.227	0					16	9	3	0	0	0	0.9836	1	21991	21991		11.495	3.8858	1	2809100	+		7851	20030	5608	5658	7638	7638					0.06481320532134305
EAVQQVLEINL	11	Unmodified	_EAVQQVLEINL_					0	0	0			REV__ENST00000503808.5_1_4:57204874-57250274:-|nuORF	REV__ENST00000503808.5_1_4:57204874-57250274:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	628.34826	1254.68197	-1.1589	-0.00072817	-0.68092	-0.00042785	-1.8398	-0.001156	628.347940245022	60.062	0.40401	60.809	60.553	60.957	0.74714	-0.10026	-8.4269E-05	NaN	11.495	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2795400	+		7852	20030	5608	5658							0.06481320532134305
EAVRPKTPPV	10	Unmodified	_EAVRPKTPPV_					0	0	0		ENSG00000169895|ENST00000380155|SYAP1	ENSG00000169895|ENST00000380155|SYAP1	ENSG00000169895|ENST00000380155|SYAP1	MSMS	A375_MHC_IP_R2	2	365.2331237792969	3	365.216991	1092.62914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.75	1	27.41	26.91	27.91	0.65992								0	0	0	0.14983	1	9072	9072		11.518	0	1				7853	7448	5609	5659	7639	7639					0.0865340725997612
EAVTIGYTAL	10	Unmodified	_EAVTIGYTAL_					0	0	0			REV__ENSG00000144028|ENST00000323853|SNRNP200	REV__ENSG00000144028|ENST00000323853|SNRNP200	MULTI-SECPEP	A375_MHC_IP_R1	1	519.2051391601562	2	519.279315	1036.54408	-0.65934	-0.00034238	-0.65752	-0.00034144	-1.3169	-0.00068382	519.2790461811128	46.711	0.45692	46.711	46.495	46.952	0					15	8	2	0	0	0	0.85226	1	16431	16431		10.074	0	1	2131400	+		7854	19404	5610	5660	7640	7640					0.02726617003509091
EAVVEVVMY	9	Unmodified	_EAVVEVVMY_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MSMS	A375_MHC_IP_R2	2	519.6788330078125	2	519.762443	1037.51033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.55	1	49.307	48.807	49.807	0.75737								0	0	0	0.15486	1	18233	18233		11.64	0	1				7855	14737	5611	5661	7641	7641					-0.006921277598848974
EAVVYVRQ	8	Unmodified	_EAVVYVRQ_					0	0	0			REV__ENSG00000164690|ENST00000297261|SHH	REV__ENSG00000164690|ENST00000297261|SHH	MULTI-MSMS	A375_MHC_IP_R1	1	483.2883605957031	2	482.266542	962.51853	0.012695	6.1222E-06	-0.20081	-9.6845E-05	-0.18812	-9.0723E-05	482.26639209004344	44.497	0.56229	44.497	44.165	44.727	0					22	10	3	0	0	0	0.77562	1	15546	15546		10.824	0.75	1	3228200	+		7856	20508	5612	5662	7642	7642					0.03577187271753246
EAWGQCLTPR	10	Unmodified	_EAWGQCLTPR_					0	0	0			REV__ENST00000486616.5_1_3:38045275-38047830:+|nuORF	REV__ENST00000486616.5_1_3:38045275-38047830:+|nuORF	MSMS	A375_MHC_IP_R1	1	387.4453125	3	387.522086	1159.54443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.026	1	39.026	38.526	39.526	0								0	0	0	0.15265	1	13295	13295		7.4771	4.1574	1		+		7857	25324	5613	5663	7643	7643					-0.028962865482981215
EAWLNVTVK	9	Unmodified	_EAWLNVTVK_					0	0	0		nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1;ENST00000532415.5_1_16:18480742-18495490:-|nuORF;ENST00000532739.1_1_16:16458768-16459152:+|nuORF	nc|ENSG00000008710|P98161-2|PKD1	nc|ENSG00000008710|P98161-2|PKD1	MULTI-SECPEP	A375_MHC_IP_R2	2	354.6109619140625	3	353.865958	1058.57605	-0.037889	-1.3408E-05	0.18308	6.4784E-05	0.14519	5.1377E-05	353.865817856811	46.801	0.50783	47.562	47.309	47.817	0.76128					20	9	3	0	0	0	0.77003	1	17559	17559		4.5289	0	1	2314100			7858	962	5614	5664	7644	7644					0.049100294773325004
EAWLYKWLQRI	11	Unmodified	_EAWLYKWLQRI_					0	0	0			REV__ENST00000374724.1_2_9:108061538-108097897:+|nuORF	REV__ENST00000374724.1_2_9:108061538-108097897:+|nuORF	MSMS	A375_MHC_IP_R2	2	753.4188842773438	2	753.416811	1504.81907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.052	1	23.683	23.183	24.183	0.63014								0	0	0	0.16334	1	7368	7368		1.3295	1.0225	1		+		7859	24113	5615	5665	7645	7645					0.08685274202343862
EAWRRVSV	8	Unmodified	_EAWRRVSV_					0	0	0		ENST00000461445.5_1_3:38050440-38050886:-|nuORF	ENST00000461445.5_1_3:38050440-38050886:-|nuORF	ENST00000461445.5_1_3:38050440-38050886:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	501.16412353515625	2	501.777608	1001.54066	-0.49019	-0.00024597	1.0104	0.000507	0.52023	0.00026104	501.77706199223746	40.067	0.56025	40.067	39.744	40.304	0					21	10	3	0	0	0	0.8957	1	13630	13630		28.487	14.979	1	2723500			7860	12185	5616	5666	7646	7646					0.03995411740186228
EAYEKYLVSLE	11	Unmodified	_EAYEKYLVSLE_					0	0	0			REV__ENST00000536443.1_1_11:63753967-63757776:+|nuORF	REV__ENST00000536443.1_1_11:63753967-63757776:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	448.9625244140625	3	448.562493	1342.66565	-0.65238	-0.00029263	0.84669	0.00037979	0.19431	8.7159E-05	448.5626378910271	20.709	0.50751	21.319	21.059	21.566	0.61029					11	9	2	0	0	0	0.99883	1	6492	6492		1.2148	0.84816	1	1287400	+		7861	20792	5617	5667	7647	7647					0.008021945753853288
EAYFHLMDRVL	11	Unmodified	_EAYFHLMDRVL_					0	0	0			REV__ENSG00000127580|ENST00000293883|WDR24	REV__ENSG00000127580|ENST00000293883|WDR24	MULTI-MSMS	A375_MHC_IP_R2	2	465.1820068359375	3	465.235945	1392.68601	-0.8095	-0.00037661	1.32	0.0006141	0.51047	0.00023749	465.2367497981382	41.389	0.20134	42.164	42.047	42.249	0.77451					6	3	2	0	0	0	0.73149	1	15389	15389		7.4771	2.4295	1	1300300	+		7862	18427	5618	5668	7648	7648					0.005370867542069391
EAYITKEQKY	10	Unmodified	_EAYITKEQKY_					0	0	0		ENSG00000204414|ENST00000309894|CSHL1	ENSG00000204414|ENST00000309894|CSHL1	ENSG00000204414|ENST00000309894|CSHL1	MULTI-SECPEP	A375_MHC_IP_R1	1	425.286865234375	3	424.887199	1271.63977	-0.18848	-8.0082E-05	-0.43412	-0.00018445	-0.6226	-0.00026454	424.88705282015104	23.252	0.2559	23.252	23.125	23.381	0					7	4	2	0	0	0	0.93733	1	6367	6367		8.4443	4.0382	1	4024100			7863	9440	5619	5669	7649	7649					0.014813451237841946
EAYLSCIDGI	10	Unmodified	_EAYLSCIDGI_					0	0	0			REV__nc|ENSG00000150995|Q14643-4|ITPR1	REV__nc|ENSG00000150995|Q14643-4|ITPR1	MSMS	A375_MHC_IP_R1	1	542.152587890625	2	542.254982	1082.49541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.741	1	31.741	31.241	32.241	0								0	0	0	0.15207	1	10190	10190		13.906	2.2658	1		+		7864	19734	5620	5670	7650	7650					-0.04253619627888838
EAYLSCIDGI	10	Unmodified	_EAYLSCIDGI_					0	0	0			REV__nc|ENSG00000150995|Q14643-4|ITPR1	REV__nc|ENSG00000150995|Q14643-4|ITPR1	MSMS	A375_MHC_IP_R1	1	542.1522216796875	2	542.254982	1082.49541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.234	1	32.234	31.734	32.734	0								0	0	0	0.15332	1	10397	10397		10.074	0.6908	1		+		7865	19734	5620	5670	7651	7651					-0.04253619627888838
EAYQEHIEEQ	10	Unmodified	_EAYQEHIEEQ_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MULTI-SECPEP	A375_MHC_IP_R1	1	637.6714477539062	2	638.278032	1274.54151	-0.72518	-0.00046286	-0.037986	-2.4246E-05	-0.76316	-0.00048711	638.2777451297649	31.328	0.50618	31.328	31.059	31.565	0					18	8	3	0	0	0	0.87043	1	10023	10023		20.415	8.1739	1	4402800			7866	4313	5621	5671	7652	7652					-0.08477883192085756
EAYRKEIEA	9	Unmodified	_EAYRKEIEA_					0	0	0			REV__PFKFB2|p.P345A|1|0.1|ENSG00000123836|chr1:207069469-207069469|C/G|missense_variant	REV__PFKFB2|p.P345A|1|0.1|ENSG00000123836|chr1:207069469-207069469|C/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	370.5923156738281	3	370.192623	1107.55604	-0.0085534	-3.1664E-06	-0.042653	-1.579E-05	-0.051206	-1.8956E-05	370.1925872647188	26.666	0.50392	26.666	26.474	26.978	0					25	9	3	0	0	0	0.34746	1	7974	7974		35.612	0	1	15910000	+		7867	27766	5622	5672	7653	7653					0.006562337467357793
EAYWQLRKQLR	11	Unmodified	_EAYWQLRKQLR_					0	0	0			REV__CEP162|p.R878Gfs*19|1|0.44|ENSG00000135315|chr6:84161790-84161790|G/-|frameshift_variant	REV__CEP162|p.R878Gfs*19|1|0.44|ENSG00000135315|chr6:84161790-84161790|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	497.67156982421875	3	497.612404	1489.81538	-0.43264	-0.00021529	-0.20322	-0.00010112	-0.63585	-0.00031641	497.9466342179284	59.032	0.30592	59.032	58.786	59.092	0					8	5	2	0	0	0	1.0011	1	21138	21138		0.45452	0	1	1050800	+		7868	15637	5623	5673	7654	7654					0.0900660442850949
EAYYMQLDW	9	Unmodified	_EAYYMQLDW_					0	0	0			REV__ENSG00000081923|ENST00000648908|ATP8B1	REV__ENSG00000081923|ENST00000648908|ATP8B1	MULTI-MSMS	A375_MHC_IP_R1	1	611.22412109375	2	609.760432	1217.50631	-0.10185	-6.2103E-05	0.37431	0.00022824	0.27246	0.00016613	609.7608279854774	70.205	0.61015	70.205	69.832	70.442	0					36	11	4	0	0	0	0.72507	1	25423	25423		4.756	0	1	3300600	+		7869	16782	5624	5674	7655	7655					-0.09374217253593997
EAYYMQLDW	9	Unmodified	_EAYYMQLDW_					0	0	0			REV__ENSG00000081923|ENST00000648908|ATP8B1	REV__ENSG00000081923|ENST00000648908|ATP8B1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	609.760432	1217.50631	-0.10185	-6.2103E-05	0.37431	0.00022824	0.27246	0.00016613	609.7608279854774	70.205	0.61015	70.205	69.832	70.442	0	-0.067409	-0.00019739	NaN	4.756	36	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3300600	+		7870	16782	5624	5674							-0.09374217253593997
ECAATRRSV	9	Unmodified	_ECAATRRSV_					0	0	0			REV__ENST00000422441.5_1_3:37574873-37583937:+|nuORF	REV__ENST00000422441.5_1_3:37574873-37583937:+|nuORF	MSMS	A375_MHC_IP_R2	2	496.6502685546875	2	496.750733	991.486913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.295	1	72.029	71.529	72.529	0.73421								0	0	0	0.15142	1	27043	27043		19.257	2.3147	1		+		7871	24603	5625	5675	7656	7656					-0.009171287538379147
ECCCCCCCDL	10	Unmodified	_ECCCCCCCDL_					0	0	0			REV__ENSG00000170075|ENST00000367282|GPR37L1	REV__ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R1	1	549.14453125	2	549.121505	1096.22846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.471	1	85.471	84.971	85.971	0								0	0	0	0.15585	1	31324	31324		1.8442	1.4435	1		+		7872	20964	5626	5676	7657	7657					-0.3158089503242536
ECDIDYDSL	9	Unmodified	_ECDIDYDSL_					0	0	0		tr|U7T0I1|U7T0I1_FUSNUToxin-antitoxinsystem,antitoxincomponent,ribbon-helix-helixdomainproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00706PE=4SV=1	tr|U7T0I1|U7T0I1_FUSNUToxin-antitoxinsystem,antitoxincomponent,ribbon-helix-helixdomainproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00706PE=4SV=1	tr|U7T0I1|U7T0I1_FUSNUToxin-antitoxinsystem,antitoxincomponent,ribbon-helix-helixdomainproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00706PE=4SV=1	MSMS	A375_MHC_IP_R2	2	536.6959838867188	2	536.710605	1071.40666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.948	1	70.682	70.182	71.182	0.73421								0	0	0	0.15486	1	26515	26515		4.3292	0	1				7873	29886	5627	5677	7658	7658					-0.1261907965820228
ECESCRPRR	9	Unmodified	_ECESCRPRR_					0	0	0			REV__tr|U7SZE4|U7SZE4_FUSNUEndonucleaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nthPE=3SV=1	REV__tr|U7SZE4|U7SZE4_FUSNUEndonucleaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nthPE=3SV=1	MSMS	A375_MHC_IP_R2	2	379.16192626953125	3	379.174692	1134.50225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.859	1	98.615	98.115	99.115	0.75586								0	0	0	0.15486	1	37137	37137		2.4985	0	1		+		7874	28641	5628	5678	7659	7659					-0.059625852283033964
ECESCRPRR	9	Unmodified	_ECESCRPRR_					0	0	0			REV__tr|U7SZE4|U7SZE4_FUSNUEndonucleaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nthPE=3SV=1	REV__tr|U7SZE4|U7SZE4_FUSNUEndonucleaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nthPE=3SV=1	MSMS	A375_MHC_IP_R2	2	379.1620178222656	3	379.174692	1134.50225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.15	1	108.91	108.41	109.41	0.75436								0	0	0	0.15486	1	40845	40845		2.4985	0	1		+		7875	28641	5628	5678	7660	7660					-0.059625852283033964
ECGPEGATLTS	11	Unmodified	_ECGPEGATLTS_					0	0	0			REV__ENST00000569761.1_1_15:75195074-75197546:-|nuORF	REV__ENST00000569761.1_1_15:75195074-75197546:-|nuORF	MSMS	A375_MHC_IP_R2	2	532.67431640625	2	532.731871	1063.44919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.585	1	41.36	40.86	41.86	0.77451								0	0	0	0.15694	1	15033	15033		16.149	1.3108	1		+		7876	26273	5629	5679	7661	7661					-0.0799968452995472
ECLLGVDDY	9	Unmodified	_ECLLGVDDY_					0	0	0			REV__ENSG00000183625|ENST00000395940|CCR3	REV__ENSG00000183625|ENST00000395940|CCR3	MULTI-MSMS	A375_MHC_IP_R1	1	513.1865844726562	2	513.726058	1025.43756	-0.68705	-0.00035296	-1.5455	-0.00079398	-2.2326	-0.0011469	513.7257883160536	86.514	0.96207	86.514	86.121	87.083	0					35	18	3	0	0	0	0.43185	1	31644	31644		23.148	5.0134	1	8121700	+		7877	21765	5630	5680	7662	7662					-0.07413881553293322
ECNFVVEQQE	10	Unmodified	_ECNFVVEQQE_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R1	1	613.1615600585938	2	612.763703	1223.51285	-0.20053	-0.00012288	-2.0547	-0.0012591	-2.2553	-0.0013819	612.7615963255207	44.125	0.56186	44.125	43.909	44.471	0					21	10	3	0	0	0	0.69695	1	15422	15422		13.615	5.4593	1	2395800	+		7878	19932	5631	5681	7663	7663					-0.08996324092868235
ECSFCLTDW	9	Unmodified	_ECSFCLTDW_					0	0	0		ENST00000306585.8_1_16:69152138-69152237:-|nuORF	ENST00000306585.8_1_16:69152138-69152237:-|nuORF	ENST00000306585.8_1_16:69152138-69152237:-|nuORF	MSMS	A375_MHC_IP_R2	2	552.1834106445312	2	552.21226	1102.40997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.2	1	100.96	100.46	101.46	0.76278								0	0	0	0.15486	1	37997	37997		4.756	0.42677	1				7879	10579	5632	5682	7664	7664					-0.13714108085218868
ECTFSCASGEY	11	Unmodified	_ECTFSCASGEY_					0	0	0		ENSG00000164659|ENST00000450689|ELAPOR2	ENSG00000164659|ENST00000450689|ELAPOR2	ENSG00000164659|ENST00000450689|ELAPOR2	MSMS	A375_MHC_IP_R1	1	598.6624145507812	2	598.715364	1195.41618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.107	1	92.107	91.607	92.607	0								0	0	0	0.16297	1	33846	33846		3.2813	0.97858	1				7880	6861	5633	5683	7665	7665					-0.1737163464429159
ECTSICNSIY	10	Unmodified	_ECTSICNSIY_					0	0	0			REV__ENSG00000158435|ENST00000289382|CNOT11	REV__ENSG00000158435|ENST00000289382|CNOT11	MULTI-MSMS	A375_MHC_IP_R2	2	567.1358642578125	2	566.736099	1131.45765	-0.45682	-0.0002589	-0.70603	-0.00040013	-1.1629	-0.00065903	566.7358788908737	80.654	0.81726	81.399	81.062	81.879	0.74473					31	15	3	0	0	0	0.45919	1	30610	30610		30.637	2.1497	1	7335900	+		7881	20076	5634	5684	7666	7666					-0.1028245388497453
EDAENIVASL	10	Unmodified	_EDAENIVASL_					0	0	0		tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1	tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1	tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1	MSMS	A375_MHC_IP_R1	1	530.7505493164062	2	530.761486	1059.50842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.76	1	102.76	102.26	103.26	0								0	0	0	0.14741	1	37764	37764		22.736	2.2827	1				7882	29468	5635	5685	7667	7667					-0.018954652441152575
EDAGDVQQFY	10	Unmodified	_EDAGDVQQFY_					0	0	0		nc|ENSG00000123358|P22736-2|NR4A1;ENSG00000123358|ENST00000394825|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	MULTI-MSMS	A375_MHC_IP_R2	2	586.6943969726562	2	586.248743	1170.48293	-0.4876	-0.00028586	-0.15038	-8.8161E-05	-0.63799	-0.00037402	586.248717060392	63.225	0.60944	63.967	63.634	64.244	0.74248					27	11	3	0	0	0	0.70329	1	24014	24014		10.824	0.75	1	2577300			7883	3841	5636	5686	7668	7668					-0.09548939766546027
EDALRLSET	9	Unmodified	_EDALRLSET_					0	0	0			REV__ENSG00000213676|ENST00000375203|ATF6B	REV__ENSG00000213676|ENST00000375203|ATF6B	MULTI-MSMS	A375_MHC_IP_R2	2	517.7105712890625	2	517.261653	1032.50875	-0.81275	-0.0004204	0.64153	0.00033184	-0.17122	-8.8563E-05	517.2616110645907	32.756	0.25377	33.493	33.417	33.671	0.73692					7	4	2	0	0	0	0.60101	1	11694	11694		14.838	4.7643	1	677420	+		7884	22628	5637	5687	7669	7669					-0.00620045524260604
EDAPSKVNYD	10	Unmodified	_EDAPSKVNYD_					0	0	0		ENST00000521091.6_1_22:31367683-31368065:+|nuORF	ENST00000521091.6_1_22:31367683-31368065:+|nuORF	ENST00000521091.6_1_22:31367683-31368065:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	569.656494140625	2	569.256568	1136.49858	-0.30818	-0.00017544	1.9665	0.0011195	1.6583	0.00094402	569.2563637958589	24.994	0.86313	24.994	24.801	25.664	0					52	16	5	0	0	0	0.50967	1	7205	7205		27.629	0	1	55011000			7885	13006	5638	5688	7670	7670					-0.06420653249506358
EDASRMEEVD	10	Oxidation (M)	_EDASRM(Oxidation (M))EEVD_		EDASRM(1)EEVD		EDASRM(42)EEVD	0	0	1		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	A375_MHC_IP_R1	1	599.1400756835938	2	598.740425	1195.4663	-0.3079	-0.00018435	-0.23505	-0.00014073	-0.54295	-0.00032509	598.740290603815	20.262	0.55887	20.262	20.079	20.638	0					16	10	2	0	0	0	0.27133	1	5212	5212		41.956	24.843	1	989360			7886	2057	5639	5689	7671	7671		76			-0.12361808714831568
EDCGCDFP	8	Unmodified	_EDCGCDFP_					0	0	0			REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2	REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MSMS	A375_MHC_IP_R2	2	443.15679931640625	2	443.141304	884.268054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.75	1	109.49	108.99	109.99	0.74684								0	0	0	0.16876	1	41057	41057		0.69038	0	1		+		7887	17464	5640	5690	7672	7672					-0.17870901107528425
EDCGHCDF	8	Unmodified	_EDCGHCDF_					0	0	0		ENST00000590901.5_1_18:47808965-47812340:-|nuORF;ENSG00000154832|ENST00000285106|CXXC1;nc|ENSG00000154832|Q9P0U4-2|CXXC1	ENST00000590901.5_1_18:47808965-47812340:-|nuORF	ENST00000590901.5_1_18:47808965-47812340:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	925.8802490234375	1	925.281479	924.274202	0.15442	0.00014288	-3.3396	-0.0030901	-3.1852	-0.0029472	925.279186493161	126.14	0.30212	126.14	126	126.3	0					8	5	2	0	0	0	0.972	1	48060	48060		0.69038	0	1	5603100			7888	6112	5641	5691	7673	7673					-0.19096382876000462
EDCGPSMYCQF	11	Unmodified	_EDCGPSMYCQF_					0	0	0		ENSG00000050165|ENST00000683431|DKK3	ENSG00000050165|ENST00000683431|DKK3	ENSG00000050165|ENST00000683431|DKK3	MSMS	A375_MHC_IP_R1	1	640.2256469726562	2	640.225042	1278.43553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.876	1	37.876	37.376	38.376	0								0	0	0	0.16297	1	12799	12799		3.2813	0	1				7889	1228	5642	5692	7674	7674					-0.19255001625083423
EDCNCDSNCY	10	Unmodified	_EDCNCDSNCY_					0	0	0			REV__ENSG00000134538|ENST00000256958|SLCO1B1	REV__ENSG00000134538|ENST00000256958|SLCO1B1	MSMS	A375_MHC_IP_R2	2	583.1666870117188	2	583.165181	1164.31581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.249	1	79.994	79.494	80.494	0.74474								0	0	0	0.15637	1	30074	30074		0.45834	0.10771	1		+		7890	18786	5643	5693	7675	7675					-0.2597761496963358
EDCQYLDAAQQ	11	Unmodified	_EDCQYLDAAQQ_					0	0	0		ENST00000425869.1_22:16634899-16650863:+|nuORF	ENST00000425869.1_22:16634899-16650863:+|nuORF	ENST00000425869.1_22:16634899-16650863:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	428.9118347167969	3	428.511803	1282.51358	-0.45475	-0.00019487	0.54607	0.000234	0.091315	3.913E-05	428.51204770543404	41.177	0.4567	41.951	41.692	42.149	0.77451					16	8	3	0	0	0	0.99945	1	15317	15317		1.0136	0.6469	1	1791900			7891	11796	5644	5694	7676	7676					-0.11637529443828498
EDCQYLDAAQQ	11	Unmodified	_EDCQYLDAAQQ_					0	0	0		ENST00000425869.1_22:16634899-16650863:+|nuORF	ENST00000425869.1_22:16634899-16650863:+|nuORF	ENST00000425869.1_22:16634899-16650863:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	428.511803	1282.51358	-0.28828	-0.00012353	0.41956	0.00017979	0.13128	5.6254E-05	428.51193823695536	41.858	0.3582	41.858	41.674	42.032	0	-0.046512	-0.00010554	NaN	0.32927	16	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1861000			7892	11796	5644	5694							-0.11637529443828498
EDDCSDSSSSL	11	Unmodified	_EDDCSDSSSSL_					0	0	0		MSANTD1|p.R186C|1|0.24|ENSG00000188981|chr4:3253442-3253442|C/T|missense_variant	MSANTD1|p.R186C|1|0.24|ENSG00000188981|chr4:3253442-3253442|C/T|missense_variant	MSANTD1|p.R186C|1|0.24|ENSG00000188981|chr4:3253442-3253442|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	572.6790771484375	2	572.700965	1143.38738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.724	1	77.724	77.224	78.224	0								0	0	0	0.16249	1	28361	28361		5.7319	1.7875	1				7893	14409	5645	5695	7677	7677					-0.17858080739756588
EDDCSDSSSSL	11	Unmodified	_EDDCSDSSSSL_					0	0	0		MSANTD1|p.R186C|1|0.24|ENSG00000188981|chr4:3253442-3253442|C/T|missense_variant	MSANTD1|p.R186C|1|0.24|ENSG00000188981|chr4:3253442-3253442|C/T|missense_variant	MSANTD1|p.R186C|1|0.24|ENSG00000188981|chr4:3253442-3253442|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	572.6788330078125	2	572.700965	1143.38738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.655	1	79.655	79.155	80.155	0								0	0	0	0.16258	1	29078	29078		5.2969	0.54088	1				7894	14409	5645	5695	7678	7678					-0.17858080739756588
EDDCSDSSSSL	11	Unmodified	_EDDCSDSSSSL_					0	0	0		MSANTD1|p.R186C|1|0.24|ENSG00000188981|chr4:3253442-3253442|C/T|missense_variant	MSANTD1|p.R186C|1|0.24|ENSG00000188981|chr4:3253442-3253442|C/T|missense_variant	MSANTD1|p.R186C|1|0.24|ENSG00000188981|chr4:3253442-3253442|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	572.6507568359375	2	572.700965	1143.38738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.721	1	79.721	79.221	80.221	0								0	0	0	0.16258	1	29102	29102		5.2969	0.54088	1				7895	14409	5645	5695	7679	7679					-0.17858080739756588
EDDCSDSSSSL	11	Unmodified	_EDDCSDSSSSL_					0	0	0		MSANTD1|p.R186C|1|0.24|ENSG00000188981|chr4:3253442-3253442|C/T|missense_variant	MSANTD1|p.R186C|1|0.24|ENSG00000188981|chr4:3253442-3253442|C/T|missense_variant	MSANTD1|p.R186C|1|0.24|ENSG00000188981|chr4:3253442-3253442|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	572.7279663085938	2	572.700965	1143.38738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.778	1	80.778	80.278	81.278	0								0	0	0	0.16302	1	29511	29511		2.9952	0.41776	1				7896	14409	5645	5695	7680	7680					-0.17858080739756588
EDDCSDSSSSL	11	Unmodified	_EDDCSDSSSSL_					0	0	0		MSANTD1|p.R186C|1|0.24|ENSG00000188981|chr4:3253442-3253442|C/T|missense_variant	MSANTD1|p.R186C|1|0.24|ENSG00000188981|chr4:3253442-3253442|C/T|missense_variant	MSANTD1|p.R186C|1|0.24|ENSG00000188981|chr4:3253442-3253442|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	572.6508178710938	2	572.700965	1143.38738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.997	1	79.741	79.241	80.241	0.74474								0	0	0	0.16191	1	29978	29978		8.7454	3.9894	1				7897	14409	5645	5695	7681	7681					-0.17858080739756588
EDDCSDSSSSL	11	Unmodified	_EDDCSDSSSSL_					0	0	0		MSANTD1|p.R186C|1|0.24|ENSG00000188981|chr4:3253442-3253442|C/T|missense_variant	MSANTD1|p.R186C|1|0.24|ENSG00000188981|chr4:3253442-3253442|C/T|missense_variant	MSANTD1|p.R186C|1|0.24|ENSG00000188981|chr4:3253442-3253442|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	572.6796264648438	2	572.700965	1143.38738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.17	1	79.915	79.415	80.415	0.74474								0	0	0	0.16191	1	30045	30045		8.7454	4.4162	1				7898	14409	5645	5695	7682	7682					-0.17858080739756588
EDDDCDDDD	9	Unmodified	_EDDDCDDDD_					0	0	0		ENSG00000189269|ENST00000317749|DRICH1	ENSG00000189269|ENST00000317749|DRICH1	ENSG00000189269|ENST00000317749|DRICH1	MSMS	A375_MHC_IP_R1	1	528.647705078125	2	528.632748	1055.25094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.706	1	46.706	46.206	47.206	0								0	0	0	0.15486	1	16402	16402		0.6015	0.6015	1				7899	8976	5646	5696	7683	7683					-0.2744719497029564
EDDDCDDDD	9	Unmodified	_EDDDCDDDD_					0	0	0		ENSG00000189269|ENST00000317749|DRICH1	ENSG00000189269|ENST00000317749|DRICH1	ENSG00000189269|ENST00000317749|DRICH1	MSMS	A375_MHC_IP_R2	2	528.648193359375	2	528.632748	1055.25094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.082	1	46.848	46.348	47.348	0.76519								0	0	0	0.15486	1	17249	17249		0.6015	0.6015	1				7900	8976	5646	5696	7684	7684					-0.2744719497029564
EDDDDDDDDSS	11	Unmodified	_EDDDDDDDDSS_					0	0	0		ENSG00000118096|ENST00000264021|IFT46;ENST00000531201.5_1_11:118415633-118427808:-|nuORF;nc|ENSG00000118096|Q9NQC8-2|IFT46	ENSG00000118096|ENST00000264021|IFT46	ENSG00000118096|ENST00000264021|IFT46	MSMS	A375_MHC_IP_R1	1	621.80029296875	2	621.673656	1241.33276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.78	1	108.78	108.28	109.28	0								0	0	0	0.16354	1	39904	39904		0.30703	0	1				7901	3524	5647	5697	7685	7685					-0.27825421077477586
EDDDDDDDVV	10	Unmodified	_EDDDDDDDVV_					0	0	0		ENSG00000132950|ENST00000337963|ZMYM5;nc|ENSG00000132950|Q9UJ78-2|ZMYM5;nc|ENSG00000132950|Q9UJ78-3|ZMYM5;ENST00000535942.5_1_13:20425681-20437631:-|nuORF;nc|ENSG00000132950|Q9UJ78-1|ZMYM5	ENSG00000132950|ENST00000337963|ZMYM5	ENSG00000132950|ENST00000337963|ZMYM5	MULTI-SECPEP	A375_MHC_IP_R1	1	576.5983276367188	2	576.19657	1150.37859	-0.34972	-0.00020151	3.05	0.0017574	2.7003	0.0015559	576.1984827312101	90.283	0.55875	90.283	90.083	90.641	0					18	10	3	0	0	0	0.94421	1	33176	33176		1.6526	0.17072	1	1990400			7902	4466	5648	5698	7686	7686					-0.1905873110461016
EDDDEDEDDEE	11	Unmodified	_EDDDEDEDDEE_					0	0	0			REV__ENSG00000108312|ENST00000436088|UBTF	REV__ENSG00000108312|ENST00000436088|UBTF	MSMS	A375_MHC_IP_R2	2	677.7014770507812	2	677.699871	1353.38519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.187	1	81.931	81.431	82.431	0.74474								0	0	0	0.16337	1	30828	30828		1.1933	0	1		+		7903	17523	5649	5699	7687	7687					-0.2773688273450716
EDDDFSKWNFY	11	Unmodified	_EDDDFSKWNFY_					0	0	0		ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-MSMS	A375_MHC_IP_R1	1	733.6989135742188	2	733.298964	1464.58338	-0.68586	-0.00050294	0.493	0.00036151	-0.19287	-0.00014143	733.299217668843	65.845	0.61128	65.845	65.36	65.972	0					17	11	2	0	0	0	0.7342	1	23876	23876		4.897	0	1	1557900			7904	1799	5650	5700	7688	7688					-0.13033327503535475
EDDDFSKWNFY	11	Unmodified	_EDDDFSKWNFY_					0	0	0		ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-MATCH	A375_MHC_IP_R2	2		2	733.298964	1464.58338	-0.88936	-0.00065217	2.3038	0.0016894	1.4144	0.0010372	734.3052617076022	65.273	0.66023	66.011	65.613	66.273	0.73811	0.083043	0.001958	NaN	4.897	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1883500			7905	1799	5650	5700							-0.13033327503535475
EDDEDDDDDD	10	Unmodified	_EDDEDDDDDD_					0	0	0		nc|ENSG00000156802|Q6PL18-2|ATAD2;ENST00000521903.5_1_8:124361561-124413087:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2	REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF	REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MSMS	A375_MHC_IP_R2	2	599.1753540039062	2	599.162924	1196.3113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.93	1	106.69	106.19	107.19	0.75977								0	0	0	0.15628	1	40052	40052		0.45834	0	1				7906	19998;6209	5651	5701	7689	7689					-0.2790080610620862
EDDEEEEEPPA	11	Unmodified	_EDDEEEEEPPA_					0	0	0			REV__nc|ENSG00000109111|Q7KZ85-3|SUPT6H	REV__nc|ENSG00000109111|Q7KZ85-3|SUPT6H	MSMS	A375_MHC_IP_R2	2	644.3148803710938	2	644.738602	1287.46265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.9	1	116.59	116.09	117.09	0.68999								0	0	0	0.16297	1	43697	43697		3.2813	0	1		+		7907	17572	5652	5702	7690	7690					-0.16958200007684354
EDDESGLHRY	10	Unmodified	_EDDESGLHRY_					0	0	0			REV__nc|ENSG00000099308|O60307|MAST3	REV__nc|ENSG00000099308|O60307|MAST3	MULTI-SECPEP	A375_MHC_IP_R2	2	610.1608276367188	2	610.762549	1219.51054	-0.40075	-0.00024476	0.67454	0.00041198	0.27379	0.00016722	610.7629293768165	69.467	0.66074	70.201	69.879	70.54	0.73421					18	12	2	0	0	0	0.9269	1	26392	26392		10.824	10.824	1	1680700	+		7908	17017	5653	5703	7691	7691					-0.09043036506318458
EDDFDEMEDQ	10	Unmodified	_EDDFDEMEDQ_					0	0	0			REV__ENSG00000054523|ENST00000676179|KIF1B	REV__ENSG00000054523|ENST00000676179|KIF1B	MSMS	A375_MHC_IP_R1	1	636.715087890625	2	636.714073	1271.41359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.093	1	24.093	23.593	24.593	0								0	0	0	0.15465	1	6752	6752		5.7319	0	1		+		7909	16404	5654	5704	7692	7692					-0.2112581156827673
EDDFLKAKSW	10	Unmodified	_EDDFLKAKSW_					0	0	0		ENST00000530104.2_1_11:111946298-111951307:+|nuORF;nc|ENSG00000150776|Q6ZUT1-3|NKAPD1;nc|ENSG00000150776|Q6ZUT1|NKAPD1;ENSG00000150776|ENST00000393047|NKAPD1	ENST00000530104.2_1_11:111946298-111951307:+|nuORF	ENST00000530104.2_1_11:111946298-111951307:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	619.7247924804688	2	619.806228	1237.5979	-0.44953	-0.00027862	-0.31325	-0.00019415	-0.76278	-0.00047278	619.8061543026566	77.142	0.70903	77.142	76.878	77.588	0					19	13	2	0	0	0	0.62155	1	28051	28051		19.257	3.1079	1	1836600			7910	5863	5655	5705	7693	7693					-0.0113921056477011
EDDFYFGGPD	10	Unmodified	_EDDFYFGGPD_					0	0	0		ENSG00000134323|ENST00000281043|MYCN;MYCN|p.S42L|1|0.28|ENSG00000134323|chr2:15942189-15942189|C/T|missense_variant;MYCN|p.D31N|1|0.4|ENSG00000134323|chr2:15942155-15942155|G/A|missense_variant	ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	MULTI-MSMS	A375_MHC_IP_R2	2	581.1640014648438	2	581.222194	1160.42983	-0.77791	-0.00045214	-0.71321	-0.00041453	-1.4911	-0.00086667	581.2217472680989	25.634	0.71074	26.293	25.992	26.703	0.65992					21	13	2	0	0	0	0.70496	1	8733	8733		10.074	0	1	3473400			7911	4567	5656	5706	7694	7694					-0.1439631754922175
EDDHGSLTH	9	Unmodified	_EDDHGSLTH_					0	0	0			REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	MSMS	A375_MHC_IP_R2	2	505.6709899902344	2	505.712328	1009.4101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.827	1	38.602	38.102	39.102	0.77451								0	0	0	0.15486	1	13870	13870		11.64	0	1		+		7912	20571	5657	5707	7695	7695					-0.09422648769316311
EDDIDDGF	8	Unmodified	_EDDIDDGF_					0	0	0		ENST00000474026.5_1_1:223946905-223957668:+|nuORF;ENST00000487223.5_1_1:223946905-223962556:+|nuORF;nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2	ENST00000474026.5_1_1:223946905-223957668:+|nuORF	ENST00000474026.5_1_1:223946905-223957668:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	924.9210205078125	1	925.342148	924.334872	-0.095262	-8.815E-05	0.10616	9.8233E-05	0.010897	1.0084E-05	925.3428167892039	112.14	1.3261	112.86	112.46	113.78	0.72458					35	25	2	0	0	0	0.972	1	42163	42163		9.3474	0	1	20661000			7913	6611	5658	5708	7696	7696					-0.130322510203996
EDDIDDGF	8	Unmodified	_EDDIDDGF_					0	0	0		ENST00000474026.5_1_1:223946905-223957668:+|nuORF;ENST00000487223.5_1_1:223946905-223962556:+|nuORF;nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2	ENST00000474026.5_1_1:223946905-223957668:+|nuORF	ENST00000474026.5_1_1:223946905-223957668:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	925.342148	924.334872	0.28308	0.00026194	0.48774	0.00045132	0.77082	0.00071327	925.3430255291285	112.63	1.1173	112.63	111.92	113.04	0	-0.11902	0.00015843	NaN	9.3474	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23708000			7914	6611	5658	5708							-0.130322510203996
EDDILHINY	9	Unmodified	_EDDILHINY_					0	0	0			REV__tr|U7STB6|U7STB6_FUSNUAdenosylmethionine-8-amino-7-oxononanoateaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioAPE=3SV=1	REV__tr|U7STB6|U7STB6_FUSNUAdenosylmethionine-8-amino-7-oxononanoateaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	566.7109375	2	566.269478	1130.5244	-0.76033	-0.00043055	-2.7686	-0.0015678	-3.529	-0.0019983	566.2696846768141	41.398	0.7143	41.398	41.114	41.828	0					35	13	4	0	0	0	0.35581	1	14381	14381		26.884	0	1	17925000	+		7915	28472	5659	5709	7697	7697					-0.03563759007238332
EDDKMPPLR	9	Unmodified	_EDDKMPPLR_					0	0	0		ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-SECPEP	A375_MHC_IP_R2	2	366.95208740234375	3	367.518341	1099.53319	-0.17607	-6.4709E-05	0.11953	4.3929E-05	-0.056542	-2.078E-05	367.85280039978096	22.472	0.25584	23.094	22.951	23.207	0.62232					6	4	2	0	0	0	0.76827	1	7161	7161		4.1895	2.8599	1	392690			7916	4718	5660	5710	7698	7698					-0.012591086424208697
EDDLYSWI	8	Unmodified	_EDDLYSWI_					0	0	0		ENSG00000188032|ENST00000548523|C19orf67	ENSG00000188032|ENST00000548523|C19orf67	ENSG00000188032|ENST00000548523|C19orf67	MSMS	A375_MHC_IP_R2	2	520.710205078125	2	520.732197	1039.44984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.184	1	55.934	55.434	56.434	0.75075								0	0	0	0.16876	1	20842	20842		9.3474	1.4373	1				7917	8875	5661	5711	7699	7699					-0.06830521818596935
EDDMDSFRY	9	Unmodified	_EDDMDSFRY_					0	0	0			REV__ENSG00000145451|ENST00000274093|GLRA3	REV__ENSG00000145451|ENST00000274093|GLRA3	MULTI-MSMS	A375_MHC_IP_R2	2	589.6279907226562	2	589.226953	1176.43935	-0.55871	-0.0003292	1.1563	0.00068135	0.59764	0.00035214	589.2278240029356	76.393	1.3683	77.133	76.436	77.805	0.74052					50	26	4	0	0	0	0.64808	2	28955	28770;28955		11.64	3.1541	1	8774300	+		7918	19475	5662	5712	7700;7701	7701					-0.14180872535325761
EDDMDSFRY	9	Unmodified	_EDDMDSFRY_					0	0	0			REV__ENSG00000145451|ENST00000274093|GLRA3	REV__ENSG00000145451|ENST00000274093|GLRA3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	589.226953	1176.43935	-0.37293	-0.00021974	1.061	0.00062516	0.68806	0.00040542	589.2275276290028	77.047	1.1669	77.047	76.421	77.588	0	-0.043037	-2.5713E-05	NaN	11.64	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10248000	+		7919	19475	5662	5712							-0.14180872535325761
EDDPEYKKFL	10	Unmodified	_EDDPEYKKFL_					0	0	0		ENSG00000169062|ENST00000375299|UPF3A	ENSG00000169062|ENST00000375299|UPF3A	ENSG00000169062|ENST00000375299|UPF3A	MULTI-SECPEP	A375_MHC_IP_R2	2	428.94317626953125	3	428.543321	1282.60813	-0.23228	-9.9542E-05	-0.11304	-4.8443E-05	-0.34532	-0.00014798	428.54326089169496	30.937	0.55589	31.656	31.367	31.923	0.71857					29	10	4	0	0	0	0.7212	1	10906	10906		17.863	0	1	9664200			7920	7376	5663	5713	7702	7702					-0.021866476301738658
EDDQEDNV	8	Unmodified	_EDDQEDNV_					0	0	0			REV__ENST00000484164.6_1_6:139233880-139237022:-|nuORF	REV__ENST00000484164.6_1_6:139233880-139237022:-|nuORF	MSMS	A375_MHC_IP_R1	1	482.1561584472656	2	482.180526	962.346499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.82	1	55.82	55.32	56.32	0								0	0	0	0.16876	1	19978	19978		5.7604	0	1		+		7921	18866	5664	5714	7703	7703					-0.13618053997072366
EDDQEDNV	8	Unmodified	_EDDQEDNV_					0	0	0			REV__ENST00000484164.6_1_6:139233880-139237022:-|nuORF	REV__ENST00000484164.6_1_6:139233880-139237022:-|nuORF	MSMS	A375_MHC_IP_R2	2	482.1562194824219	2	482.180526	962.346499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.947	1	55.698	55.198	56.198	0.75075								0	0	0	0.16876	1	20747	20747		5.7604	0	1		+		7922	18866	5664	5714	7704	7704					-0.13618053997072366
EDDQREPSAP	10	Unmodified	_EDDQREPSAP_					0	0	0			REV__ENST00000425348.1_1_X:53483765-53483951:-|nuORF	REV__ENST00000425348.1_1_X:53483765-53483951:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	572.6687622070312	2	572.249274	1142.484	-0.64952	-0.00037169	1.1241	0.00064325	0.47456	0.00027157	572.2502107614703	24.771	0.65973	25.414	25.11	25.77	0.64368					21	12	2	0	0	0	0.90853	1	8304	8304		10.824	0	1	2278300	+		7923	24634	5665	5715	7705	7705					-0.08154725397662332
EDDRHEVYYLV	11	Unmodified	_EDDRHEVYYLV_					0	0	0			REV__ENSG00000138078|ENST00000409411|PREPL	REV__ENSG00000138078|ENST00000409411|PREPL	MULTI-SECPEP	A375_MHC_IP_R1	1	479.71380615234375	3	479.893013	1436.65721	-0.033404	-1.603E-05	0.30853	0.00014806	0.27512	0.00013203	479.89294678083	49.434	0.30595	49.434	49.285	49.591	0					8	5	2	0	0	0	1.0002	1	17537	17537		1.3296	0.92138	1	633430	+		7924	19060	5666	5716	7706	7706					-0.04365359341227304
EDDRHEVYYLV	11	Unmodified	_EDDRHEVYYLV_					0	0	0			REV__ENSG00000138078|ENST00000409411|PREPL	REV__ENSG00000138078|ENST00000409411|PREPL	MULTI-MATCH	A375_MHC_IP_R2	2		3	479.893013	1436.65721	-0.63047	-0.00030256	-0.90372	-0.00043369	-1.5342	-0.00073625	480.226768172019	48.702	0.25618	49.459	49.332	49.588	0.75737	0.012792	-0.00093498	NaN	5.0475	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	962990	+		7925	19060	5666	5716							-0.04365359341227304
EDDSIEADIL	10	Unmodified	_EDDSIEADIL_					0	0	0		ENST00000477543.1_1_15:59971734-59981480:-|nuORF;ENST00000560458.5_1_15:59970098-59981480:-|nuORF;ENSG00000140299|ENST00000607373|BNIP2;nc|ENSG00000140299|Q12982-2|BNIP2	ENST00000477543.1_1_15:59971734-59981480:-|nuORF	ENST00000477543.1_1_15:59971734-59981480:-|nuORF	MSMS	A375_MHC_IP_R2	2	560.1956176757812	2	560.256234	1118.49791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.708	1	51.462	50.962	51.962	0.75406								0	0	0	0.15105	1	19072	19072		15.847	0	1				7926	5139	5667	5717	7707	7707					-0.05659492689233048
EDDSRNHGSPS	11	Unmodified	_EDDSRNHGSPS_					0	0	0		nc|ENSG00000073146|Q9BXT6-5|MOV10L1;nc|ENSG00000073146|Q9BXT6-4|MOV10L1;ENSG00000073146|ENST00000262794|MOV10L1	nc|ENSG00000073146|Q9BXT6-5|MOV10L1	nc|ENSG00000073146|Q9BXT6-5|MOV10L1	MULTI-MSMS	A375_MHC_IP_R2	2	601.1465454101562	2	600.74743	1199.48031	-0.81032	-0.0004868	-0.79214	-0.00047588	-1.6025	-0.00096267	600.7469481163172	38.721	0.40781	39.496	39.3	39.708	0.77451					12	7	2	0	0	0	0.73016	1	14293	14293		8.7454	2.0222	1	3310000			7927	1559	5668	5718	7708	7708					-0.1114539517150206
EDDTKIIKTL	10	Unmodified	_EDDTKIIKTL_					0	0	0		tr|U7T8N3|U7T8N3_FUSNUVirulence-associatedproteinE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00110PE=4SV=1	tr|U7T8N3|U7T8N3_FUSNUVirulence-associatedproteinE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00110PE=4SV=1	tr|U7T8N3|U7T8N3_FUSNUVirulence-associatedproteinE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00110PE=4SV=1	MSMS	A375_MHC_IP_R2	2	588.6248779296875	2	588.329536	1174.64452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.967	1	89.699	89.199	90.199	0.7318								0	0	0	0.15353	1	33861	33861		9.3831	1.2276	1				7928	30064	5669	5719	7709	7709					0.06418229266546405
EDDYDEDYYDD	11	Unmodified	_EDDYDEDYYDD_					0	0	0			REV__ENSG00000180447|ENST00000298743|GAS1	REV__ENSG00000180447|ENST00000298743|GAS1	MSMS	A375_MHC_IP_R1	1	728.3383178710938	2	728.730974	1455.44739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.69	1	117.69	117.19	118.19	0								0	0	0	0.1636	1	43252	43252		0	0	1		+		7929	21612	5670	5720	7710	7710					-0.2621111159555767
EDDYDEDYYDD	11	Unmodified	_EDDYDEDYYDD_					0	0	0			REV__ENSG00000180447|ENST00000298743|GAS1	REV__ENSG00000180447|ENST00000298743|GAS1	MSMS	A375_MHC_IP_R2	2	728.7843017578125	2	728.730974	1455.44739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.78	1	104.55	104.05	105.05	0.76428								0	0	0	0.1636	1	39290	39290		0	0	1		+		7930	21612	5670	5720	7711	7711					-0.2621111159555767
EDDYDGEEY	9	Unmodified	_EDDYDGEEY_					0	0	0		ENST00000435954.2_1_6:54350144-54350642:-|nuORF	ENST00000435954.2_1_6:54350144-54350642:-|nuORF	ENST00000435954.2_1_6:54350144-54350642:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	567.7005615234375	2	567.690923	1133.36729	-0.71462	-0.00040569	-1.2987	-0.00073724	-2.0133	-0.0011429	567.6901857662866	67.662	0.76126	67.662	67.245	68.006	0					22	14	2	0	0	0	0.72507	1	24630	24630		4.756	0.42677	1	1295100			7931	11920	5671	5721	7712	7712					-0.19405508408067362
EDDYSCSVY	9	Unmodified	_EDDYSCSVY_					0	0	0		MCOLN2|p.N177Kfs*2|1|0.17|ENSG00000153898|chr1:84956465-84956466|-/T|frameshift_variant;ENST00000531325.5_1_1:85403252-85462600:-|nuORF;MCOLN2|p.S489Dfs*14|1|0.35|ENSG00000153898|chr1:84931414-84931439|ATATATATAAAAAGGCTGATGAAGGA/-|frameshift_variant;nc|ENSG00000153898|Q8IZK6-2|MCOLN2;ENSG00000153898|ENST00000370608|MCOLN2	MCOLN2|p.N177Kfs*2|1|0.17|ENSG00000153898|chr1:84956465-84956466|-/T|frameshift_variant	MCOLN2|p.N177Kfs*2|1|0.17|ENSG00000153898|chr1:84956465-84956466|-/T|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	361.1991271972656	3	360.799062	1079.37536	-0.18086	-6.5255E-05	-2.4636	-0.00088887	-2.6445	-0.00095413	360.7988618000475	62.852	0.65629	63.595	63.282	63.938	0.74263					22	12	3	0	0	0	0.72761	1	23849	23849		4.5289	2.0304	1	2405200			7932	6046	5672	5722	7713	7713					-0.16115652692292315
EDDYSCSVY	9	Unmodified	_EDDYSCSVY_					0	0	0		MCOLN2|p.N177Kfs*2|1|0.17|ENSG00000153898|chr1:84956465-84956466|-/T|frameshift_variant;ENST00000531325.5_1_1:85403252-85462600:-|nuORF;MCOLN2|p.S489Dfs*14|1|0.35|ENSG00000153898|chr1:84931414-84931439|ATATATATAAAAAGGCTGATGAAGGA/-|frameshift_variant;nc|ENSG00000153898|Q8IZK6-2|MCOLN2;ENSG00000153898|ENST00000370608|MCOLN2	MCOLN2|p.N177Kfs*2|1|0.17|ENSG00000153898|chr1:84956465-84956466|-/T|frameshift_variant	MCOLN2|p.N177Kfs*2|1|0.17|ENSG00000153898|chr1:84956465-84956466|-/T|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	360.799062	1079.37536	0.18261	6.5884E-05	-2.6708	-0.00096362	-2.4882	-0.00089773	360.798758797563	63.52	0.71454	63.52	63.173	63.887	0	-0.037356	-0.00011984	NaN	4.5289	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1662800			7933	6046	5672	5722							-0.16115652692292315
EDEADYYCSSY	11	Unmodified	_EDEADYYCSSY_					0	0	0		nc|ENSG00000278196|P01709|IGLV2-8;nc|ENSG00000211666|P01704|IGLV2-14	nc|ENSG00000278196|P01709|IGLV2-8	nc|ENSG00000278196|P01709|IGLV2-8	MULTI-MSMS	A375_MHC_IP_R1	1	673.131591796875	2	672.732265	1343.44998	-0.52198	-0.00035115	-1.546	-0.00104	-2.068	-0.0013912	672.7319548156189	43.393	0.56035	43.393	43.146	43.706	0					22	10	3	0	0	0	0.73016	1	15105	15105		8.7454	3.4485	1	2884400			7934	14873	5673	5723	7714	7714					-0.20800934671569848
EDEDAEDSSAN	11	Unmodified	_EDEDAEDSSAN_					0	0	0		ENSG00000134250|ENST00000256646|NOTCH2	ENSG00000134250|ENST00000256646|NOTCH2	ENSG00000134250|ENST00000256646|NOTCH2	MULTI-SECPEP	A375_MHC_IP_R2	2	591.1541137695312	2	591.207469	1180.40038	-0.76286	-0.00045101	-0.43122	-0.00025494	-1.1941	-0.00070595	591.7086252543602	36.399	0.40704	37.17	36.901	37.308	0.7709					14	7	3	0	0	0	0.99018	1	13161	13161		7.609	0	1	2025100			7935	4559	5674	5724	7715	7715					-0.1825992635599505
EDEDEEEEREK	11	Unmodified	_EDEDEEEEREK_					0	0	0		ENSG00000163528|ENST00000396914|CHCHD4;nc|ENSG00000163528|Q8N4Q1-2|CHCHD4	ENSG00000163528|ENST00000396914|CHCHD4	ENSG00000163528|ENST00000396914|CHCHD4	MSMS	A375_MHC_IP_R2	2	718.7896728515625	2	718.786615	1435.55868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.89	1	52.642	52.142	53.142	0.75225								0	0	0	0.16258	1	19541	19541		5.2969	2.0156	1				7936	6679	5675	5725	7716	7716					-0.14168052167633505
EDEDIIQFT	9	Unmodified	_EDEDIIQFT_					0	0	0			REV__SPON1|p.E120D|1|0.08|ENSG00000262655|chr11:14041535-14041535|A/C|missense_variant	REV__SPON1|p.E120D|1|0.08|ENSG00000262655|chr11:14041535-14041535|A/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	555.6536254882812	2	555.253494	1108.49243	-0.5509	-0.00030589	1.0649	0.00059129	0.514	0.0002854	555.2540334212816	61.648	0.66393	61.648	61.382	62.046	0					28	12	3	0	0	0	0.65721	1	22227	22227		10.824	0	1	6402000	+		7937	28037	5676	5726	7717	7717					-0.057471714810162666
EDEDWKLYCQ	10	Unmodified	_EDEDWKLYCQ_					0	0	0			REV__ENSG00000138829|ENST00000262464|FBN2	REV__ENSG00000138829|ENST00000262464|FBN2	MSMS	A375_MHC_IP_R1	1	664.7794799804688	2	664.77681	1327.53907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.459	1	67.459	66.959	67.959	0								0	0	0	0.15435	1	24446	24446		6.7232	0.99131	1		+		7938	19127	5677	5727	7718	7718					-0.11160054921379015
EDEDYEEEWS	10	Unmodified	_EDEDYEEEWS_					0	0	0			REV__nc|ENSG00000171680|O94827-4|PLEKHG5	REV__nc|ENSG00000171680|O94827-4|PLEKHG5	MULTI-SECPEP	A375_MHC_IP_R1	1	443.6794128417969	3	444.157972	1329.45209	-0.080173	-3.5609E-05	-0.37625	-0.00016711	-0.45642	-0.00020272	444.15782577315895	57.857	0.40594	57.857	57.568	57.974	0					10	7	2	0	0	0	0.95032	1	20661	20661		0.12286	0	1	797380	+		7939	21086	5678	5728	7719	7719					-0.19946182662124556
EDEEEEKEEPD	11	Unmodified	_EDEEEEKEEPD_					0	0	0		MBD3|p.E279K|1|0.28|ENSG00000071655|chr19:1578381-1578381|C/T|missense_variant	MBD3|p.E279K|1|0.28|ENSG00000071655|chr19:1578381-1578381|C/T|missense_variant	MBD3|p.E279K|1|0.28|ENSG00000071655|chr19:1578381-1578381|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	689.2625732421875	2	689.262441	1376.51033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.709	1	55.709	55.209	56.209	0								0	0	0	0.16297	1	19933	19933		3.2813	0	1				7940	14357	5679	5729	7720	7720					-0.1628654580752027
EDEEENEEEHE	11	Unmodified	_EDEEENEEEHE_					0	0	0			REV__nc|ENSG00000080503|P51531-2|SMARCA2	REV__nc|ENSG00000080503|P51531-2|SMARCA2	MULTI-SECPEP	A375_MHC_IP_R1	1	709.4486083984375	2	709.247322	1416.48009	-0.33456	-0.00023729	-1.4505	-0.0010288	-1.7851	-0.0012661	709.2475794365143	108.28	0.30578	108.28	108.15	108.46	0					7	5	2	0	0	0	1.0008	1	39703	39703		1.3295	0	1	1812300	+		7941	16749	5680	5730	7721	7721					-0.21148904472693175
EDEELMQAY	9	Unmodified	_EDEELMQAY_					0	0	0		nc|ENSG00000135541|Q8N157-2|AHI1;ENSG00000135541|ENST00000265602|AHI1;nc|ENSG00000135541|Q8N157-3|AHI1	nc|ENSG00000135541|Q8N157-2|AHI1	nc|ENSG00000135541|Q8N157-2|AHI1	MULTI-MSMS	A375_MHC_IP_R1	1	565.2059326171875	2	564.231704	1126.44886	-0.33586	-0.0001895	1.0954	0.00061806	0.75954	0.00042856	564.2301441590372	47.531	1.4243	47.531	46.901	48.325	0					72	27	4	0	0	0	0.64808	1	16747	16747		11.64	1.4569	1	5882200			7942	4695	5681	5731	7722	7722					-0.10931104249812051
EDEEPPHQQ	9	Unmodified	_EDEEPPHQQ_					0	0	0		ENSG00000176887|ENST00000322002|SOX11	ENSG00000176887|ENST00000322002|SOX11	ENSG00000176887|ENST00000322002|SOX11	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1793212890625	2	554.730717	1107.44688	-1.0661	-0.00059141	1.3415	0.00074417	0.27538	0.00015276	554.7313279461413	49.495	0.45386	50.252	49.995	50.449	0.75737					11	8	2	0	0	0	0.67483	1	18669	18669		10.074	0	1	1085400			7943	8036	5682	5732	7723	7723					-0.10254396943423671
EDEEVDDNLY	10	Unmodified	_EDEEVDDNLY_					0	0	0			REV__ENSG00000127311|ENST00000247815|HELB	REV__ENSG00000127311|ENST00000247815|HELB	MSMS	A375_MHC_IP_R2	2	620.7409057617188	2	620.74623	1239.47791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.763	1	67.499	66.999	67.999	0.73631								0	0	0	0.15308	1	25293	25293		10.824	0	1		+		7944	18414	5683	5733	7724	7724					-0.13225288419835124
EDEEVDGKPL	10	Unmodified	_EDEEVDGKPL_					0	0	0			REV__ENST00000426249.1_1_17:18364441-18364834:+|nuORF	REV__ENST00000426249.1_1_17:18364441-18364834:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1130.8125	1	1130.52117	1129.5139	0.059405	6.7159E-05	-1.9141	-0.002164	-1.8547	-0.0020968	1130.5191779759568	107.22	1.1172	107.97	107.24	108.35	0.75436					28	21	2	0	0	0	0.94516	1	40296	40296		3.5965	0	1	3121100	+		7945	24649	5684	5734	7725	7725					-0.04567786452321343
EDEEWEDIS	9	Unmodified	_EDEEWEDIS_					0	0	0		ENSG00000105321|ENST00000221922|CCDC9;chr19:47272161-47273357|472|49.64|0.0|22.24|+|ENST00000643617|CCDC9,CCDC9	ENSG00000105321|ENST00000221922|CCDC9	ENSG00000105321|ENST00000221922|CCDC9	MSMS	A375_MHC_IP_R2	2	576.1573486328125	2	576.222391	1150.43023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.319	1	83.062	82.562	83.562	0.74293								0	0	0	0.15486	1	31270	31270		7.9102	2.1783	1				7946	457	5685	5735	7726	7726					-0.13896942620044683
EDEFFDALY	9	Unmodified	_EDEFFDALY_					0	0	0			REV__ENST00000437111.1_1_10:52390343-52390514:-|nuORF	REV__ENST00000437111.1_1_10:52390343-52390514:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	575.1423950195312	2	574.742762	1147.47097	-0.66984	-0.00038499	0.33403	0.00019198	-0.33581	-0.00019301	574.742925962843	29.245	0.40685	29.245	28.996	29.403	0					11	7	2	0	0	0	0.63811	1	9156	9156		12.532	0	1	3429200	+		7947	19443	5686	5736	7727	7727					-0.0968655650974597
EDEIEIEPV	9	Unmodified	_EDEIEIEPV_					0	0	0		ENSG00000100565|ENST00000689127|LRRC74A	ENSG00000100565|ENST00000689127|LRRC74A	ENSG00000100565|ENST00000689127|LRRC74A	MSMS	A375_MHC_IP_R1	1	536.6951904296875	2	536.755869	1071.49719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.412	1	51.412	50.912	51.912	0								0	0	0	0.15486	1	18249	18249		7.9102	0.3012	1				7948	2192	5687	5737	7728	7728					-0.03570287338266098
EDEIMPEVVE	10	Unmodified	_EDEIMPEVVE_					0	0	0		nc|ENSG00000071994|Q16342-3|PDCD2;ENSG00000071994|ENST00000541970|PDCD2;nc|ENSG00000071994|Q16342-5|PDCD2;nc|ENSG00000071994|Q16342-2|PDCD2;nc|ENSG00000071994|Q16342-4|PDCD2;ENST00000544336.5_2_6:170891348-170893772:-|nuORF	nc|ENSG00000071994|Q16342-3|PDCD2;ENST00000544336.5_2_6:170891348-170893772:-|nuORF	nc|ENSG00000071994|Q16342-3|PDCD2	MULTI-SECPEP	A375_MHC_IP_R2	2	397.5803527832031	3	397.181283	1188.52202	-0.43892	-0.00017433	0.25795	0.00010245	-0.18097	-7.1876E-05	397.18060405220115	21.487	0.45819	22.106	21.928	22.387	0.61932					16	8	3	0	0	0	0.88918	1	6792	6792		7.9454	1.315	1	2846500			7949	1524;13314	5688	5738	7729	7729					-0.06469975527193128
EDEKEWQERMN	11	Unmodified	_EDEKEWQERMN_					0	0	0		ENSG00000134899|ENST00000652225|ERCC5;nc|ENSG00000134899|P28715-3|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	MSMS	A375_MHC_IP_R1	1	747.6744995117188	2	747.319905	1492.62526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.95	1	100.95	100.45	101.45	0								0	0	0	0.16249	1	37107	37107		5.7319	2.4505	1				7950	4621	5689	5739	7730	7730					-0.10135095086707224
EDEKGVAYY	9	Unmodified	_EDEKGVAYY_					0	0	0			REV__MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant	REV__MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	537.1983642578125	2	537.242929	1072.47131	-0.9602	-0.00051586	-0.49019	-0.00026335	-1.4504	-0.00077922	537.2428077902314	50.883	0.35223	51.637	51.462	51.815	0.75406					9	6	2	0	0	0	0.41409	1	19125	19125		24.021	0.23079	1	1145200	+		7951	19879	5690	5740	7731	7731					-0.06203136789895325
EDEKGVAYY	9	Unmodified	_EDEKGVAYY_					0	0	0			REV__MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant	REV__MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	537.203125	2	537.242929	1072.47131	-0.9602	-0.00051586	-0.49019	-0.00026335	-1.4504	-0.00077922	537.2428077902314	50.883	0.35223	51.637	51.462	51.815	0.75406					9	6	2	0	0	0	0.74412	1	19080	19080		14.838	1.7958	1	1145200	+		7952	19879	5690	5740	7732	7732					-0.06203136789895325
EDEKKLEEE	9	Unmodified	_EDEKKLEEE_					0	0	0			REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MULTI-SECPEP	A375_MHC_IP_R2	2	573.9971313476562	2	574.769508	1147.52446	-0.47103	-0.00027073	0.4089	0.00023502	-0.062127	-3.5709E-05	574.7686847091643	41.185	0.30467	41.96	41.743	42.047	0.77451					9	5	2	0	0	0	0.62767	1	15232	15232		16.942	0	1	1565900	+		7953	19903	5691	5741	7733	7733					-0.0433980379791592
EDEKMLYHM	9	Unmodified	_EDEKMLYHM_					0	0	0			REV__ENST00000434805.1_1_1:35816564-35817152:+|nuORF	REV__ENST00000434805.1_1_1:35816564-35817152:+|nuORF	MSMS	A375_MHC_IP_R1	1	598.1854858398438	2	598.259742	1194.50493	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.828	1	33.828	33.328	34.328	0								0	0	0	0.1499	1	11083	11083		21.747	5.5975	1		+		7954	24742	5692	5742	7734	7734					-0.08454174614030308
EDEKMLYHM	9	Unmodified	_EDEKMLYHM_					0	0	0			REV__ENST00000434805.1_1_1:35816564-35817152:+|nuORF	REV__ENST00000434805.1_1_1:35816564-35817152:+|nuORF	MSMS	A375_MHC_IP_R2	2	598.1851196289062	2	598.259742	1194.50493	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.179	1	33.931	33.431	34.431	0.75225								0	0	0	0.1499	1	11865	11865		21.747	1.3321	1		+		7955	24742	5692	5742	7735	7735					-0.08454174614030308
EDEMCWNY	8	Unmodified	_EDEMCWNY_					0	0	0		EFEMP1|p.H354Y|1|0.24|ENSG00000115380|chr2:55871064-55871064|G/A|missense_variant;nc|ENSG00000115380|Q12805-5|EFEMP1;nc|ENSG00000115380|Q12805-2|EFEMP1;nc|ENSG00000115380|Q12805-4|EFEMP1;nc|ENSG00000115380|Q12805-3|EFEMP1;ENSG00000115380|ENST00000355426|EFEMP1	EFEMP1|p.H354Y|1|0.24|ENSG00000115380|chr2:55871064-55871064|G/A|missense_variant	EFEMP1|p.H354Y|1|0.24|ENSG00000115380|chr2:55871064-55871064|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	545.2205200195312	2	545.186242	1088.35793	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.096	1	97.852	97.352	98.352	0.75586								0	0	0	0.16876	1	36855	36855		5.7604	0	1				7956	826	5693	5743	7736	7736					-0.18271271498952046
EDENNNYPI	9	Unmodified	_EDENNNYPI_					0	0	0		DSC2|p.D238N|2|0.26|ENSG00000134755|chr18:31087732-31087732|C/T|missense_variant	DSC2|p.D238N|2|0.26|ENSG00000134755|chr18:31087732-31087732|C/T|missense_variant	DSC2|p.D238N|2|0.26|ENSG00000134755|chr18:31087732-31087732|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	554.2166748046875	2	554.233093	1106.45163	-0.79209	-0.000439	1.2457	0.00069042	0.45363	0.00025142	554.234020131249	64.825	0.91484	65.563	65.257	66.172	0.73811					27	17	3	0	0	0	0.65721	1	24757	24757		10.824	0.75	1	3249900			7957	802	5694	5744	7737	7737					-0.09733512800653443
EDENPHLIY	9	Unmodified	_EDENPHLIY_					0	0	0			REV__nc|ENSG00000102780|Q86XP1-2|DGKH	REV__nc|ENSG00000102780|Q86XP1-2|DGKH	MSMS	A375_MHC_IP_R1	1	565.1563720703125	2	565.261653	1128.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.262	1	57.262	56.762	57.762	0								0	0	0	0.1499	1	20536	20536		21.747	8.7042	1		+		7958	17231	5695	5745	7738	7738					-0.05036045524275323
EDEPKHDYS	9	Unmodified	_EDEPKHDYS_					0	0	0			REV__ENST00000472077.1_1_2:27604468-27607956:-|nuORF	REV__ENST00000472077.1_1_2:27604468-27607956:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	559.4840087890625	2	560.233093	1118.45163	-0.51126	-0.00028642	3.0705	0.0017202	2.5593	0.0014338	560.7356271275754	85.019	0.25601	85.755	85.626	85.882	0.73601					5	4	2	0	0	0	0.76187	1	32292	32292		7.2892	1.0834	1	878000	+		7959	17867	5696	5746	7739	7739					-0.10285512800646757
EDERLEARF	9	Unmodified	_EDERLEARF_					0	0	0			REV__ENST00000520495.5_1_18:8785939-8809580:+|nuORF	REV__ENST00000520495.5_1_18:8785939-8809580:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	389.259765625	3	388.859643	1163.5571	-0.36033	-0.00014012	0.1544	6.0038E-05	-0.20593	-8.0078E-05	388.8596826021897	33.164	0.45863	33.916	33.737	34.196	0.75225					20	8	3	0	0	0	0.50355	1	11867	11867		19.626	1.2862	1	11245000	+		7960	20862	5697	5747	7740	7740					-0.018135518843791942
EDETNSLSRE	10	Unmodified	_EDETNSLSRE_					0	0	0			REV__nc|ENSG00000163681|Q14BN4-7|SLMAP	REV__nc|ENSG00000163681|Q14BN4-7|SLMAP	MSMS	A375_MHC_IP_R2	2	590.1558227539062	2	590.259839	1178.50512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.963	1	25.607	25.107	26.107	0.64368								0	0	0	0.13403	1	8286	8286		32.786	2.1491	1		+		7961	20397	5698	5748	7741	7741					-0.07698760088828749
EDETSTKLHSM	11	Unmodified	_EDETSTKLHSM_					0	0	0			REV__nc|ENSG00000278970|Q8NB50-2|ZFP62	REV__nc|ENSG00000278970|Q8NB50-2|ZFP62	MSMS	A375_MHC_IP_R1	1	639.2614135742188	2	639.287542	1276.56053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.217	1	62.217	61.717	62.717	0								0	0	0	0.16203	1	22463	22463		8.1555	0	1		+		7962	22221	5699	5749	7742	7742					-0.06668669892701473
EDEVLVFADSQ	11	Unmodified	_EDEVLVFADSQ_					0	0	0		ENSG00000158683|ENST00000289672|PKD1L1;nc|ENSG00000158683|Q8TDX9-2|PKD1L1	ENSG00000158683|ENST00000289672|PKD1L1	ENSG00000158683|ENST00000289672|PKD1L1	MULTI-MSMS	A375_MHC_IP_R2	2	626.693603515625	2	626.290608	1250.56666	-0.74343	-0.0004656	1.2431	0.00077856	0.4997	0.00031296	626.7902354115906	70.074	3.0445	70.808	68.458	71.503	0.73421					93	59	3	0	0	0	0.7039	1	26649	26649		15.248	2.206	1	6781800			7963	6322	5700	5750	7743	7743					-0.048598283894989436
EDEYRIRFEE	10	Unmodified	_EDEYRIRFEE_					0	0	0			REV__nc|ENSG00000167767|Q6KB66-2|KRT80	REV__nc|ENSG00000167767|Q6KB66-2|KRT80	MULTI-MSMS	A375_MHC_IP_R1	1	693.7197875976562	2	693.320231	1384.62591	-0.62243	-0.00043155	-0.0011508	-7.979E-07	-0.62358	-0.00043234	693.3202623170916	73.707	0.45606	73.707	73.437	73.893	0					14	8	3	0	0	0	0.71361	1	26882	26882		6.2058	0.47393	1	1511300	+	+	7964	15893	5701	5751	7744	7744					-0.05101932375305296
EDFDHCCSTY	10	Unmodified	_EDFDHCCSTY_					0	0	0			REV__ENSG00000136960|ENST00000075322|ENPP2	REV__ENSG00000136960|ENST00000075322|ENPP2	MSMS	A375_MHC_IP_R2	2	610.234619140625	2	610.205163	1218.39577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.39	1	64.13	63.63	64.63	0.74022								0	0	0	0.15435	1	24030	24030		6.7232	5.3936	1		+		7965	18979	5702	5752	7745	7745					-0.2046880530413091
EDFEDDSWEWG	11	Unmodified	_EDFEDDSWEWG_					0	0	0			REV__ENSG00000172939|ENST00000311806|OXSR1	REV__ENSG00000172939|ENST00000311806|OXSR1	MSMS	A375_MHC_IP_R2	2	708.0057983398438	2	707.757129	1413.49971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.56	1	113.28	112.78	113.78	0.72458								0	0	0	0.16302	1	42431	42431		2.9952	0	1		+		7966	21182	5703	5753	7746	7746					-0.19050483671298934
EDFESDYKKY	10	Unmodified	_EDFESDYKKY_					0	0	0		ENSG00000170832|ENST00000300896|USP32;ENST00000448331.7_2_17:16704364-16705764:+|nuORF	ENSG00000170832|ENST00000300896|USP32	ENSG00000170832|ENST00000300896|USP32	MULTI-SECPEP	A375_MHC_IP_R1	1	442.2630310058594	3	441.862831	1322.56666	0.08411	3.7165E-05	-0.31998	-0.00014139	-0.23587	-0.00010422	441.8627168790946	35.477	0.50944	35.477	35.218	35.727	0					21	9	3	0	0	0	0.028212	1	11785	11785		72.59	53.446	1	7480200			7967	7544	5704	5754	7747	7747					-0.08171828389527036
EDFESDYKKY	10	Unmodified	_EDFESDYKKY_					0	0	0		ENSG00000170832|ENST00000300896|USP32;ENST00000448331.7_2_17:16704364-16705764:+|nuORF	ENSG00000170832|ENST00000300896|USP32	ENSG00000170832|ENST00000300896|USP32	MULTI-SECPEP	A375_MHC_IP_R1	1	662.6900024414062	2	662.290608	1322.56666	-0.34777	-0.00023032	-0.046793	-3.099E-05	-0.39456	-0.00026132	662.2902471409665	35.497	0.40723	35.497	35.218	35.625	0					15	7	3	0	0	0	0.025827	1	11827	11827		110.79	87.003	1	2908700			7968	7544	5704	5754	7748	7748					-0.08171828389527036
EDFESDYKKY	10	Unmodified	_EDFESDYKKY_					0	0	0		ENSG00000170832|ENST00000300896|USP32;ENST00000448331.7_2_17:16704364-16705764:+|nuORF	ENSG00000170832|ENST00000300896|USP32	ENSG00000170832|ENST00000300896|USP32	MULTI-MSMS	A375_MHC_IP_R2	2	442.15087890625	3	441.862831	1322.56666	-0.5559	-0.00024563	0.23273	0.00010284	-0.32317	-0.0001428	441.86287719985893	34.902	0.50387	35.665	35.425	35.929	0.76338					25	9	4	0	0	0	0.080535	1	12595	12595		51.765	29.966	1	7885200			7969	7544	5704	5754	7749	7749					-0.08171828389527036
EDFESDYKKY	10	Unmodified	_EDFESDYKKY_					0	0	0		ENSG00000170832|ENST00000300896|USP32;ENST00000448331.7_2_17:16704364-16705764:+|nuORF	ENSG00000170832|ENST00000300896|USP32	ENSG00000170832|ENST00000300896|USP32	MULTI-MSMS	A375_MHC_IP_R2	2	662.68994140625	2	662.290608	1322.56666	-1.079	-0.0007146	0.45328	0.0003002	-0.62571	-0.0004144	662.2909332730836	34.928	0.353	35.691	35.525	35.878	0.76338					15	6	3	0	0	0	0.0068576	1	12648	12648		132.38	102.54	1	3275700			7970	7544	5704	5754	7750	7750					-0.08171828389527036
EDFETAVKKL	10	Unmodified	_EDFETAVKKL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MSMS	A375_MHC_IP_R2	2	590.2296142578125	2	590.316428	1178.6183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.427	1	37.198	36.698	37.698	0.7709								0	0	0	0.15365	1	13278	13278		14.838	6.9281	1				7971	6015	5705	5755	7751	7751					0.03613960095049151
EDFKYDAYI	9	Unmodified	_EDFKYDAYI_					0	0	0			REV__ANAPC10|p.S85F|1|0.86|ENSG00000164162|chr4:145064645-145064645|G/A|missense_variant	REV__ANAPC10|p.S85F|1|0.86|ENSG00000164162|chr4:145064645-145064645|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	582.25439453125	2	582.266404	1162.51826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.06	1	137.17	136.67	137.67	0.11134								0	0	0	0.1535	1	53808	53808		15.847	1.0089	1		+		7972	15392	5706	5756	7752	7752					-0.05650277238760282
EDFLIKVHLLQ	11	Unmodified	_EDFLIKVHLLQ_					0	0	0			REV__PLXNC1|p.V1557I|1|0.56|ENSG00000136040|chr12:94305247-94305247|G/A|missense_variant	REV__PLXNC1|p.V1557I|1|0.56|ENSG00000136040|chr12:94305247-94305247|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	677.8916015625	2	677.890095	1353.76564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.49	1	55.241	54.741	55.741	0.75075								0	0	0	0.16302	1	20563	20563		2.9952	0	1		+		7973	27813	5707	5757	7753	7753					0.10290476699856299
EDFLKDMV	8	Unmodified	_EDFLKDMV_					0	0	0			REV__ENSG00000135537|ENST00000368977|AFG1L	REV__ENSG00000135537|ENST00000368977|AFG1L	MULTI-SECPEP	A375_MHC_IP_R1	1	498.1877136230469	2	498.738968	995.463383	-0.3853	-0.00019216	-0.18165	-9.0596E-05	-0.56695	-0.00028276	498.73886133026275	73.969	0.65871	73.969	73.69	74.349	0					21	12	2	0	0	0	0.8824	1	26948	26948		23.148	0	1	1585900	+		7974	18861	5708	5758	7754	7754					-0.034529873110273
EDFRENIFQY	10	Unmodified	_EDFRENIFQY_					0	0	0		ENSG00000071991|ENST00000262150|CDH19	ENSG00000071991|ENST00000262150|CDH19	ENSG00000071991|ENST00000262150|CDH19	MULTI-SECPEP	A375_MHC_IP_R1	1	681.2120971679688	2	680.812042	1359.60953	-0.62055	-0.00042248	1.1738	0.00079911	0.55321	0.00037663	681.3149629324604	91.717	0.45345	91.717	91.554	92.007	0					14	8	2	0	0	0	0.22459	1	33738	33738		49.554	18.286	1	2023100			7975	1523	5709	5759	7755	7755					-0.05589013541430177
EDFRENIFQY	10	Unmodified	_EDFRENIFQY_					0	0	0		ENSG00000071991|ENST00000262150|CDH19	ENSG00000071991|ENST00000262150|CDH19	ENSG00000071991|ENST00000262150|CDH19	MULTI-MATCH	A375_MHC_IP_R2	2		2	680.812042	1359.60953	-0.54099	-0.00036831	-0.18755	-0.00012768	-0.72853	-0.00049599	680.812287992234	91.108	0.35445	91.843	91.717	92.071	0.7345	0.063085	-0.00077871	NaN	49.554	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1933100			7976	1523	5709	5759							-0.05589013541430177
EDFSLGESHS	10	Unmodified	_EDFSLGESHS_					0	0	0			REV__chr2:241641116-241651010|99|13.28|0.1|7.07|+|0|TE_info:L2a,L2a_dup28829,L2,LINE,donor,-,241640469,241641116|None,ATG4B|7	REV__chr2:241641116-241651010|99|13.28|0.1|7.07|+|0|TE_info:L2a,L2a_dup28829,L2,LINE,donor,-,241640469,241641116|None,ATG4B|7	MULTI-MSMS	A375_MHC_IP_R2	2	554.189453125	2	554.233093	1106.45163	-0.79209	-0.000439	1.2457	0.00069042	0.45363	0.00025142	554.234020131249	64.825	0.91484	65.563	65.257	66.172	0.73811					27	17	3	0	0	0	0.70651	1	24671	24671		9.3831	0	1	3249900	+		7977	15738	5710	5760	7756	7756					-0.09733512800653443
EDFVEAVKEEA	11	Unmodified	_EDFVEAVKEEA_					0	0	0		nc|ENSG00000114626|Q969K4-3|ABTB1;ENSG00000114626|ENST00000232744|ABTB1;nc|ENSG00000114626|Q969K4-2|ABTB1;ENST00000464431.1_1_3:127398812-127399315:+|nuORF;nc|ENSG00000114626|Q969K4-4|ABTB1	nc|ENSG00000114626|Q969K4-3|ABTB1;nc|ENSG00000114626|Q969K4-4|ABTB1	nc|ENSG00000114626|Q969K4-3|ABTB1	MULTI-SECPEP	A375_MHC_IP_R1	1	423.31011962890625	3	422.534714	1264.58231	0.17828	7.5329E-05	0.59117	0.00024979	0.76945	0.00032512	422.53499979241224	21.172	0.60992	21.172	20.742	21.352	0					25	11	3	0	0	0	0.98782	1	5387	5387		15.538	2.6658	1	1615300			7978	3231;14556	5711	5761	7757	7757					-0.03939541872432528
EDFVRDVLEER	11	Unmodified	_EDFVRDVLEER_					0	0	0			REV__nc|ENSG00000143702|Q5SW79-3|CEP170	REV__nc|ENSG00000143702|Q5SW79-3|CEP170	MSMS	A375_MHC_IP_R1	1	469.6209716796875	3	469.568529	1405.68376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.391	1	24.391	23.891	24.891	0								0	0	0	0.16224	1	6915	6915		7.0371	2.9205	1		+		7979	19381	5712	5762	7758	7758					-0.002856704498981344
EDFWLKAI	8	Unmodified	_EDFWLKAI_					0	0	0		ENST00000303277.6_1_4:1718443-1718770:-|nuORF	ENST00000303277.6_1_4:1718443-1718770:-|nuORF	ENST00000303277.6_1_4:1718443-1718770:-|nuORF	MSMS	A375_MHC_IP_R2	2	511.2105407714844	2	511.271293	1020.52803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.898	1	87.631	87.131	88.131	0.733								0	0	0	0.16876	1	33047	33047		18.135	4.6271	1				7980	10555	5713	5763	7759	7759					0.01858955557270292
EDFYKLVSE	9	Unmodified	_EDFYKLVSE_					0	0	0		nc|ENSG00000170835|P19835-2|CEL;ENSG00000170835|ENST00000372080|CEL	nc|ENSG00000170835|P19835-2|CEL	nc|ENSG00000170835|P19835-2|CEL	MSMS	A375_MHC_IP_R2	2	565.1949462890625	2	565.274229	1128.53391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.818	1	98.573	98.073	99.073	0.75586								0	0	0	0.15142	1	37121	37121		19.257	2.3147	1				7981	7545	5714	5764	7760	7760					-0.025219907217206128
EDFYYSEFYPW	11	Unmodified	_EDFYYSEFYPW_					0	0	0		ENSG00000132464|ENST00000396073|ENAM	ENSG00000132464|ENST00000396073|ENAM	ENSG00000132464|ENST00000396073|ENAM	MULTI-MSMS	A375_MHC_IP_R1	1	516.278076171875	3	515.878481	1544.61361	-0.65615	-0.00033849	-0.35053	-0.00018083	-1.0067	-0.00051933	515.878350514629	19.546	0.25439	19.546	19.42	19.674	0					14	4	4	0	0	0	0.73795	1	4918	4918		0.45452	0	1	5081900			7982	4410	5715	5765	7761	7761					-0.13690968838386652
EDGCKIHNL	9	Unmodified	_EDGCKIHNL_					0	0	0		DNAH11|p.G879E|1|0.24|ENSG00000105877|chr7:21591546-21591546|G/A|missense_variant	DNAH11|p.G879E|1|0.24|ENSG00000105877|chr7:21591546-21591546|G/A|missense_variant	DNAH11|p.G879E|1|0.24|ENSG00000105877|chr7:21591546-21591546|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	514.7003784179688	2	514.745116	1027.47568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.831	1	85.831	85.331	86.331	0								0	0	0	0.15283	1	31462	31462		16.942	2.104	1				7983	760	5716	5766	7762	7762					-0.03695950847986751
EDGDGRLRPSP	11	Unmodified	_EDGDGRLRPSP_					0	0	0		nc|ENSG00000184507|Q86Y26-2|NUTM1;nc|ENSG00000184507|Q86Y26|NUTM1;nc|ENSG00000184507|Q86Y26-3|NUTM1;ENSG00000184507|ENST00000537011|NUTM1	nc|ENSG00000184507|Q86Y26-2|NUTM1	nc|ENSG00000184507|Q86Y26-2|NUTM1	MULTI-SECPEP	A375_MHC_IP_R1	1	600.1954345703125	2	599.794183	1197.57381	-0.45822	-0.00027484	2.6351	0.0015805	2.1768	0.0013057	599.7955716585675	76.552	0.65984	76.552	76.219	76.878	0					18	12	2	0	0	0	0.76597	1	27916	27916		22.658	9.7855	1	2484200			7984	8590	5717	5767	7763	7763					-0.01707050998447812
EDGDGTDD	8	Unmodified	_EDGDGTDD_					0	0	0		ENSG00000148291|ENST00000371964|SURF2	ENSG00000148291|ENST00000371964|SURF2	ENSG00000148291|ENST00000371964|SURF2	MULTI-MSMS	A375_MHC_IP_R1	1	824.2217407226562	1	823.258812	822.251536	0.018229	1.5007E-05	-1.6559	-0.0013633	-1.6377	-0.0013483	823.2595284676232	112.87	0.4038	112.87	112.69	113.09	0					9	7	2	0	0	0	0.7779	1	41439	41439		2.5775	0	1	1361500			7985	5727	5718	5768	7764	7764					-0.16669987468276304
EDGDSEGGRW	10	Unmodified	_EDGDSEGGRW_					0	0	0		nc|ENSG00000182310|W5XKT8-2|SPACA6;ENST00000331594.6_19:52196686-52197501:+|nuORF	nc|ENSG00000182310|W5XKT8-2|SPACA6	nc|ENSG00000182310|W5XKT8-2|SPACA6	MULTI-MSMS	A375_MHC_IP_R1	1	554.6564331054688	2	554.220517	1106.42648	-0.73228	-0.00040585	0.72192	0.0004001	-0.010364	-5.7439E-06	554.2211125447044	41.8	2.2361	41.8	41.266	43.502	0					63	43	4	0	0	0	0.71466	1	14673	14673		5.7319	0.97584	1	13825000			7986	10772	5719	5769	7765	7765					-0.12247567603208154
EDGDWTELGAP	11	Unmodified	_EDGDWTELGAP_					0	0	0		ARMCX6|p.P78L|1|0.22|ENSG00000198960|chrX:101616388-101616388|G/A|missense_variant	ARMCX6|p.P78L|1|0.22|ENSG00000198960|chrX:101616388-101616388|G/A|missense_variant	ARMCX6|p.P78L|1|0.22|ENSG00000198960|chrX:101616388-101616388|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	594.65869140625	2	595.254025	1188.4935	-0.34407	-0.00020481	0.73835	0.00043951	0.39428	0.0002347	595.2543960061818	112.83	0.25746	113.55	113.48	113.73	0.72458					6	4	2	0	0	0	0.98591	1	42522	42522		5.7319	0	1	1524700			7987	181	5720	5770	7766	7766					-0.09320957112140604
EDGEEEEERGE	11	Unmodified	_EDGEEEEERGE_					0	0	0		ENSG00000169933|ENST00000675598|FRMPD4	ENSG00000169933|ENST00000675598|FRMPD4	ENSG00000169933|ENST00000675598|FRMPD4	MSMS	A375_MHC_IP_R2	2	654.20263671875	2	654.247125	1306.4797	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.94	1	110.68	110.18	111.18	0.74684								0	0	0	0.16191	1	41479	41479		8.7454	3.4485	1				7988	7454	5721	5771	7767	7767					-0.1612827940191437
EDGFTYYY	8	Unmodified	_EDGFTYYY_					0	0	0		nc|ENSG00000120688|O75554-2|WBP4;ENSG00000120688|ENST00000379487|WBP4	nc|ENSG00000120688|O75554-2|WBP4	nc|ENSG00000120688|O75554-2|WBP4	MULTI-MSMS	A375_MHC_IP_R2	2	530.195068359375	2	529.211098	1056.40764	-0.50347	-0.00026644	1.2083	0.00063946	0.70486	0.00037302	529.212040025332	88.259	0.55687	88.991	88.671	89.228	0.7318					22	10	3	0	0	0	0.77686	1	33567	33567		6.3541	1.1234	1	3083500			7989	3676	5722	5772	7768	7768					-0.1183049722699252
EDGHRLADWQ	10	Unmodified	_EDGHRLADWQ_					0	0	0		nc|ENSG00000130052|Q92502|STARD8;ENSG00000130052|ENST00000374599|STARD8	nc|ENSG00000130052|Q92502|STARD8	nc|ENSG00000130052|Q92502|STARD8	MULTI-SECPEP	A375_MHC_IP_R1	1	409.9226379394531	3	409.523143	1225.5476	0.096893	3.968E-05	-1.5521	-0.00063563	-1.4552	-0.00059595	409.52228328210015	23.035	0.60381	23.035	22.572	23.176	0					17	8	3	0	0	0	0.93733	1	6241	6241		5.4027	0.35519	1	5296900			7990	4220	5723	5773	7769	7769					-0.05615320169908955
EDGKGKCLYD	10	Unmodified	_EDGKGKCLYD_					0	0	0		SEMA4C|p.P160L|1|0.13|ENSG00000168758|chr2:96865479-96865479|G/A|missense_variant	SEMA4C|p.P160L|1|0.13|ENSG00000168758|chr2:96865479-96865479|G/A|missense_variant	SEMA4C|p.P160L|1|0.13|ENSG00000168758|chr2:96865479-96865479|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	564.165771484375	2	564.255514	1126.49647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.329	1	95.074	94.574	95.574	0.74474								0	0	0	0.15038	1	35849	35849		17.113	2.2746	1				7991	29132	5724	5774	7770	7770					-0.06171405258965024
EDGKIIQLP	9	Unmodified	_EDGKIIQLP_					0	0	0		nc|ENSG00000083067|Q9HCF6-10|TRPM3;nc|ENSG00000083067|Q9HCF6-8|TRPM3;nc|ENSG00000083067|Q9HCF6-4|TRPM3;nc|ENSG00000083067|Q9HCF6-2|TRPM3;nc|ENSG00000083067|Q9HCF6-5|TRPM3;nc|ENSG00000083067|Q9HCF6-6|TRPM3;ENSG00000083067|ENST00000677713|TRPM3;nc|ENSG00000083067|Q9HCF6-7|TRPM3;nc|ENSG00000083067|Q9HCF6|TRPM3;nc|ENSG00000083067|Q9HCF6-11|TRPM3	nc|ENSG00000083067|Q9HCF6-10|TRPM3	nc|ENSG00000083067|Q9HCF6-10|TRPM3	MULTI-MSMS	A375_MHC_IP_R1	1	1013.5736083984375	1	1012.56734	1011.56006	0.32945	0.00033359	1.1513	0.0011658	1.4808	0.0014994	1012.5678927408819	105.59	1.4266	105.59	105.35	106.78	0					41	27	2	0	0	0	0.6898	1	39090	39090		7.9102	0	1	5352900			7992	1769	5725	5775	7771	7771					0.054743232404462105
EDGKIIQLP	9	Unmodified	_EDGKIIQLP_					0	0	0		nc|ENSG00000083067|Q9HCF6-10|TRPM3;nc|ENSG00000083067|Q9HCF6-8|TRPM3;nc|ENSG00000083067|Q9HCF6-4|TRPM3;nc|ENSG00000083067|Q9HCF6-2|TRPM3;nc|ENSG00000083067|Q9HCF6-5|TRPM3;nc|ENSG00000083067|Q9HCF6-6|TRPM3;ENSG00000083067|ENST00000677713|TRPM3;nc|ENSG00000083067|Q9HCF6-7|TRPM3;nc|ENSG00000083067|Q9HCF6|TRPM3;nc|ENSG00000083067|Q9HCF6-11|TRPM3	nc|ENSG00000083067|Q9HCF6-10|TRPM3	nc|ENSG00000083067|Q9HCF6-10|TRPM3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	1012.56734	1011.56006	0.078222	7.9205E-05	1.5617	0.0015813	1.6399	0.0016605	1013.5718305964521	104.9	0.91397	105.66	105.31	106.22	0.76308	0.036514	0.00019525	NaN	7.9102	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4349300			7993	1769	5725	5775							0.054743232404462105
EDGMKTVPW	9	Unmodified	_EDGMKTVPW_					0	0	0		TPH1|p.E103K|1|0.26|ENSG00000129167|chr11:18033369-18033369|C/T|missense_variant	TPH1|p.E103K|1|0.26|ENSG00000129167|chr11:18033369-18033369|C/T|missense_variant	TPH1|p.E103K|1|0.26|ENSG00000129167|chr11:18033369-18033369|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	531.7103271484375	2	531.749867	1061.48518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.565	1	58.565	58.065	59.065	0								0	0	0	0.15486	1	21039	21039		16.942	6.7589	1				7994	29378	5726	5776	7772	7772					-0.04310182562426235
EDGNYGHE	8	Unmodified	_EDGNYGHE_					0	0	0		ENSG00000162415|ENST00000359600|ZSWIM5	ENSG00000162415|ENST00000359600|ZSWIM5	ENSG00000162415|ENST00000359600|ZSWIM5	MULTI-SECPEP	A375_MHC_IP_R1	1	920.1943359375	1	920.338066	919.330789	0.30354	0.00027936	0.97105	0.0008937	1.2746	0.0011731	920.3397956019231	115.65	1.7255	115.65	114.57	116.29	0					47	33	2	0	0	0	0.972	1	42354	42354		5.7604	0	1	12261000			7995	6531	5727	5777	7773	7773					-0.1321029572346788
EDGNYGHE	8	Unmodified	_EDGNYGHE_					0	0	0		ENSG00000162415|ENST00000359600|ZSWIM5	ENSG00000162415|ENST00000359600|ZSWIM5	ENSG00000162415|ENST00000359600|ZSWIM5	MULTI-MATCH	A375_MHC_IP_R2	2		1	920.338066	919.330789	-0.13327	-0.00012265	1.19	0.0010952	1.0567	0.00097252	920.339808243137	115.04	1.5764	115.73	114.76	116.34	0.68999	0.037922	8.3425E-05	NaN	5.7604	52	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13224000			7996	6531	5727	5777							-0.1321029572346788
EDGPKSSQSNF	11	Unmodified	_EDGPKSSQSNF_					0	0	0		ENSG00000112893|ENST00000261483|MAN2A1	ENSG00000112893|ENST00000261483|MAN2A1	ENSG00000112893|ENST00000261483|MAN2A1	MSMS	A375_MHC_IP_R1	1	598.17431640625	2	598.264924	1194.5153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.904	1	99.904	99.404	100.4	0								0	0	0	0.15488	1	36709	36709		17.443	0.32975	1				7997	3117	5728	5778	7774	7774					-0.07418152363561603
EDGQVFEEF	9	Unmodified	_EDGQVFEEF_					0	0	0			REV__ENST00000491007.1_1_15:41793996-41794740:+|nuORF	REV__ENST00000491007.1_1_15:41793996-41794740:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	550.6868286132812	2	550.232561	1098.45057	-0.92858	-0.00051094	0.73967	0.00040699	-0.18892	-0.00010395	550.2329390776944	65.493	0.60809	66.231	65.917	66.526	0.73811					19	11	2	0	0	0	0.65721	1	24907	24907		10.824	2.9138	1	1901100	+		7998	19040	5729	5779	7775	7775					-0.09471727169557198
EDGTALDVHF	10	Unmodified	_EDGTALDVHF_					0	0	0		nc|ENSG00000187172|Q86Y30|BAGE2	nc|ENSG00000187172|Q86Y30|BAGE2	nc|ENSG00000187172|Q86Y30|BAGE2	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1851806640625	2	552.253828	1102.4931	-0.80365	-0.00044382	1.3732	0.00075835	0.56954	0.00031453	552.2535359823034	41.748	1.019	42.522	41.997	43.016	0.77451					41	19	3	0	0	0	0.73628	1	15436	15436		10.824	0	1	3133800			7999	14819	5730	5780	7776	7776					-0.05404332041325688
EDHCLEGE	8	Unmodified	_EDHCLEGE_					0	0	0		PSD4|p.G821R|1|0.48|ENSG00000125637|chr2:113197750-113197750|G/A|missense_variant;ENST00000487574.1_1_2:113953766-113955491:+|nuORF;ENST00000418251.6_1_2:113943320-113958989:+|nuORF;ENST00000409656.5_1_2:113943320-113958989:+|nuORF;nc|ENSG00000125637|Q8NDX1-2|PSD4;ENSG00000125637|ENST00000245796|PSD4	PSD4|p.G821R|1|0.48|ENSG00000125637|chr2:113197750-113197750|G/A|missense_variant	PSD4|p.G821R|1|0.48|ENSG00000125637|chr2:113197750-113197750|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	930.867431640625	1	931.346188	930.338911	-0.15839	-0.00014752	-0.62425	-0.00058139	-0.78264	-0.0007289	931.3465833177809	109.54	1.4273	110.29	109.47	110.9	0.74684					43	27	2	0	0	0	0.972	1	41162	41162		5.2307	0	1	6181000			8000	3974	5731	5781	7777	7777					-0.12904484798343674
EDHERERFYIY	11	Unmodified	_EDHERERFYIY_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MSMS	A375_MHC_IP_R2	2	519.6364135742188	3	519.575795	1555.70556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.886	1	34.638	34.138	35.138	0.75225								0	0	0	0.16269	1	12173	12173		4.7159	4.0891	1				8001	5023	5732	5782	7778	7778					-0.05006865701307106
EDHLMSAMNI	10	Unmodified	_EDHLMSAMNI_					0	0	0		ENSG00000134686|ENST00000683057|PHC2;nc|ENSG00000134686|Q8IXK0-4|PHC2;nc|ENSG00000134686|Q8IXK0|PHC2;ENST00000467894.5_1_1:33790468-33797238:-|nuORF;nc|ENSG00000134686|Q8IXK0-2|PHC2;nc|ENSG00000173889|Q8NDX5-2|PHC3;nc|ENSG00000173889|Q8NDX5|PHC3;ENSG00000173889|ENST00000495893|PHC3	ENSG00000134686|ENST00000683057|PHC2	ENSG00000134686|ENST00000683057|PHC2	MSMS	A375_MHC_IP_R1	1	580.6928100585938	2	580.757366	1159.50018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.622	1	44.622	44.122	45.122	0								0	0	0	0.076768	1	15578	15578		47.749	5.9091	1				8002	4595	5733	5783	7779	7779					-0.07319058756752383
EDHRVLAEGF	10	Unmodified	_EDHRVLAEGF_					0	0	0			REV__nc|ENSG00000128595|O43852-15|CALU	REV__nc|ENSG00000128595|O43852-15|CALU	MULTI-MSMS	A375_MHC_IP_R1	1	391.9283142089844	3	391.528005	1171.56219	-0.048014	-1.8799E-05	0.45606	0.00017856	0.40804	0.00015976	391.52831054029133	32.883	0.40511	32.883	32.634	33.04	0					12	7	2	0	0	0	0.69875	1	10715	10715		12.856	1.3381	1	4178700	+		8003	18458	5734	5784	7780	7780					-0.016732480217797274
EDHSFAGLASL	11	Unmodified	_EDHSFAGLASL_					0	0	0		ENSG00000170382|ENST00000367177|LRRN2	ENSG00000170382|ENST00000367177|LRRN2	ENSG00000170382|ENST00000367177|LRRN2	MULTI-SECPEP	A375_MHC_IP_R1	1	573.5548706054688	2	573.774928	1145.5353	-0.0822	-4.7164E-05	-1.2165	-0.00069799	-1.2987	-0.00074516	573.7741701548474	78.371	0.65984	78.371	77.946	78.606	0					17	12	2	0	0	0	0.9754	1	28583	28583		8.1555	0	1	1202800			8004	7500	5735	5785	7781	7781					-0.03164356632964882
EDIEELVEPV	10	Unmodified	_EDIEELVEPV_					0	0	0		ENSG00000173692|ENST00000308696|PSMD1;nc|ENSG00000173692|Q99460-2|PSMD1;ENST00000491229.1_1_2:232035243-232035423:+|nuORF	ENSG00000173692|ENST00000308696|PSMD1	ENSG00000173692|ENST00000308696|PSMD1	MULTI-SECPEP	A375_MHC_IP_R2	2	390.9642028808594	3	391.19581	1170.5656	-0.59124	-0.00023129	3.2537	0.0012728	2.6625	0.0010415	391.1964856714361	28.436	0.50756	29.115	28.706	29.214	0.67857					13	9	2	0	0	0	0.91909	1	9769	9769		8.4443	5.9458	1	1705900			8005	7821	5736	5786	7782	7782					-0.012860427584200806
EDIEITTL	8	Unmodified	_EDIEITTL_					0	0	0			REV__tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	REV__tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	467.96209716796875	2	467.242398	932.470243	-0.24567	-0.00011479	1.6929	0.00079098	1.4472	0.0006762	467.2431829450666	31.451	0.76216	31.451	31.262	32.024	0					18	14	2	0	0	0	0.972	1	10294	10294		5.2307	0.47466	1	1254400	+		8006	28847	5737	5787	7783	7783					0.0013064884118421105
EDIETKELH	9	Unmodified	_EDIETKELH_					0	0	0			REV__ENSG00000155304|ENST00000285667|HSPA13	REV__ENSG00000155304|ENST00000285667|HSPA13	MULTI-SECPEP	A375_MHC_IP_R2	2	556.6605224609375	2	557.274761	1112.53497	-0.7944	-0.0004427	1.0386	0.00057879	0.24421	0.00013609	557.2751198758315	30.975	0.20235	31.694	31.567	31.77	0.71857					5	3	2	0	0	0	0.62767	1	10895	10895		16.942	0	1	1294800	+		8007	19920	5738	5788	7784	7784					-0.016797763527847565
EDIKESFCY	9	Unmodified	_EDIKESFCY_					0	0	0		ENSG00000184378|ENST00000330368|ACTRT3	ENSG00000184378|ENST00000330368|ACTRT3	ENSG00000184378|ENST00000330368|ACTRT3	MULTI-MSMS	A375_MHC_IP_R2	2	568.1986083984375	2	567.244615	1132.47468	-0.54015	-0.00030639	1.1155	0.00063275	0.57533	0.00032635	567.2450725027937	66.228	1.8839	66.966	65.511	67.395	0.73788					65	36	3	0	0	0	0.65721	1	25008	25008		10.824	0	1	6340900			8008	8578	5739	5789	7785	7785					-0.08626210007537338
EDIKFILIITF	11	Unmodified	_EDIKFILIITF_					0	0	0		tr|U7SJ10|U7SJ10_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02303PE=4SV=1	tr|U7SJ10|U7SJ10_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02303PE=4SV=1	tr|U7SJ10|U7SJ10_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02303PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	675.7786865234375	2	676.397221	1350.77989	-0.71331	-0.00048248	2.9097	0.0019681	2.1964	0.0014856	676.3969317445013	106.25	0.25472	107.01	106.88	107.14	0.75977					6	4	2	0	0	0	0.99676	1	40176	40176		2.9952	0.26005	1	942130			8009	29440	5740	5790	7786	7786					0.11853129128144246
EDKERKWNLTE	11	Unmodified	_EDKERKWNLTE_					0	0	0		nc|ENSG00000176927|A4FU69-3|EFCAB5;ENSG00000176927|ENST00000394835|EFCAB5;nc|ENSG00000176927|A4FU69-2|EFCAB5;nc|ENSG00000176927|A4FU69-4|EFCAB5	nc|ENSG00000176927|A4FU69-3|EFCAB5	nc|ENSG00000176927|A4FU69-3|EFCAB5	MULTI-MSMS	A375_MHC_IP_R1	1	483.1582336425781	3	483.244045	1446.71031	-0.63299	-0.00030589	-0.11266	-5.4444E-05	-0.74565	-0.00036033	483.243968520509	41.311	0.86273	41.311	40.863	41.725	0					37	16	3	0	0	0	0.73354	1	14161	14161		5.5233	0.80737	1	9824400			8010	8045	5741	5791	7787	7787					0.004820184414256801
EDKGLYGGSSY	11	Unmodified	_EDKGLYGGSSY_					0	0	0		ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	MULTI-MSMS	A375_MHC_IP_R2	2	588.6632080078125	2	588.264393	1174.51423	-0.95607	-0.00056242	-0.076352	-4.4915E-05	-1.0324	-0.00060734	588.2639609277578	56.556	0.7137	57.307	56.948	57.662	0.75014					30	13	3	0	0	0	0.38403	1	21361	21361		40.239	3.733	1	4489900			8011	5870	5742	5792	7788	7788					-0.06604366732449307
EDKICLVNDP	10	Unmodified	_EDKICLVNDP_					0	0	0		ENSG00000108578|ENST00000261714|BLMH	ENSG00000108578|ENST00000261714|BLMH	ENSG00000108578|ENST00000261714|BLMH	MULTI-MSMS	A375_MHC_IP_R1	1	574.3310546875	2	573.278989	1144.54342	-0.37425	-0.00021455	-1.4013	-0.00080336	-1.7756	-0.0010179	573.2785607674807	41.874	0.45996	41.874	41.622	42.082	0					15	8	3	0	0	0	0.42311	1	14466	14466		32.786	7.3864	1	2285700			8012	2816	5743	5793	7789	7789					-0.023065457078246254
EDKIKSWSDFY	11	Unmodified	_EDKIKSWSDFY_					0	0	0		tr|U7T0B4|U7T0B4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00933PE=4SV=1;tr|U7T2S0|U7T2S0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00438PE=4SV=1	tr|U7T0B4|U7T0B4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00933PE=4SV=1	tr|U7T0B4|U7T0B4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00933PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	709.7343139648438	2	709.33535	1416.65615	-0.76321	-0.00054137	-0.49516	-0.00035123	-1.2584	-0.00089261	709.3347471935191	31.469	0.45972	32.187	31.974	32.434	0.71857					18	8	3	0	0	0	0.72649	1	11126	11126		12.241	0.74595	1	6112600			8013	29878	5744	5794	7790	7790					-0.035515737101377454
EDKIKSWSDFY	11	Unmodified	_EDKIKSWSDFY_					0	0	0		tr|U7T0B4|U7T0B4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00933PE=4SV=1;tr|U7T2S0|U7T2S0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00438PE=4SV=1	tr|U7T0B4|U7T0B4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00933PE=4SV=1	tr|U7T0B4|U7T0B4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00933PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	709.33535	1416.65615	-0.66455	-0.00047139	-0.86427	-0.00061306	-1.5288	-0.0010844	709.3347220280217	32.101	0.46255	32.101	31.819	32.282	0	-0.043071	-0.00028629	NaN	12.241	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5483500			8014	29878	5744	5794							-0.035515737101377454
EDKPLDEGY	9	Unmodified	_EDKPLDEGY_					0	0	0		nc|ENSG00000110768|P32780-2|GTF2H1;ENST00000418116.6_1_11:18344284-18382305:+|nuORF;ENSG00000110768|ENST00000265963|GTF2H1	nc|ENSG00000110768|P32780-2|GTF2H1	nc|ENSG00000110768|P32780-2|GTF2H1	MULTI-MSMS	A375_MHC_IP_R1	1	533.6401977539062	2	533.240386	1064.46622	-0.42793	-0.00022819	0.7574	0.00040387	0.32947	0.00017569	533.2407343023614	71.942	1.1124	71.942	71.615	72.728	0					26	21	2	0	0	0	0.68046	1	26150	26150		8.7454	3.0136	1	3558700			8015	2947	5745	5795	7791	7791					-0.06343440652517529
EDKSAGSSDY	10	Unmodified	_EDKSAGSSDY_					0	0	0			REV__nc|ENSG00000150995|Q14643-4|ITPR1	REV__nc|ENSG00000150995|Q14643-4|ITPR1	MSMS	A375_MHC_IP_R2	2	529.6138916015625	2	529.717276	1057.42	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.83	1	77.572	77.072	78.072	0.74254								0	0	0	0.14673	1	29171	29171		24.021	4.7636	1		+		8016	19734	5746	5796	7792	7792					-0.10641505554599462
EDKVQLPK	8	Unmodified	_EDKVQLPK_					0	0	0			REV__nc|ENSG00000136108|Q8WWK9-4|CKAP2	REV__nc|ENSG00000136108|Q8WWK9-4|CKAP2	MULTI-MSMS	A375_MHC_IP_R2	2	479.3009033203125	2	478.7742	955.533846	-0.79729	-0.00038172	0.36927	0.0001768	-0.42802	-0.00020492	478.77404612479495	23.984	0.40866	24.614	24.333	24.742	0.63014					13	7	2	0	0	0	0.77488	1	7782	7782		13.508	0	1	3485300	+		8017	15792	5747	5797	7793	7793					0.0543005406894963
EDLAGVLNKI	10	Unmodified	_EDLAGVLNKI_					0	0	0			REV__ENSG00000198142|ENST00000356454|SOWAHC	REV__ENSG00000198142|ENST00000356454|SOWAHC	MULTI-SECPEP	A375_MHC_IP_R1	1	357.9449768066406	3	357.873001	1070.59717	0.044253	1.5837E-05	1.2866	0.00046044	1.3309	0.00047628	357.8734324256112	38.533	0.51225	38.533	38.268	38.78	0					13	9	2	0	0	0	0.91556	1	13032	13032		3.3196	0	1	1801500	+		8018	22346	5748	5798	7794	7794					0.06469994786198185
EDLAYVKGGF	10	Unmodified	_EDLAYVKGGF_					0	0	0			REV__nc|ENSG00000090539|Q9H2X0-5|CHRD	REV__nc|ENSG00000090539|Q9H2X0-5|CHRD	MULTI-SECPEP	A375_MHC_IP_R1	1	550.17724609375	2	549.776939	1097.53933	-0.48794	-0.00026826	1.3715	0.00075403	0.88357	0.00048577	549.7774332550476	31.722	0.35648	31.722	31.565	31.921	0					12	6	3	0	0	0	0.92389	1	10199	10199		3.9444	0.66309	1	3449500	+		8019	16927	5749	5799	7795	7795					-0.005542671392504417
EDLCWCCSW	9	Unmodified	_EDLCWCCSW_					0	0	0			REV__ENSG00000168411|ENST00000361070|RFWD3	REV__ENSG00000168411|ENST00000361070|RFWD3	MSMS	A375_MHC_IP_R2	2	572.6875	2	572.698463	1143.38237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.144	1	78.887	78.387	79.387	0.74293								0	0	0	0.15486	1	29675	29675		4.756	0	1		+		8020	20854	5750	5800	7796	7796					-0.1835833461709626
EDLDYLVKLG	10	Unmodified	_EDLDYLVKLG_					0	0	0		tr|U7SLU1|U7SLU1_FUSNUGlycerophosphoryldiesterphosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01892PE=4SV=1	tr|U7SLU1|U7SLU1_FUSNUGlycerophosphoryldiesterphosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01892PE=4SV=1	tr|U7SLU1|U7SLU1_FUSNUGlycerophosphoryldiesterphosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01892PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	582.6881103515625	2	582.810979	1163.6074	-0.045285	-2.6393E-05	-0.42967	-0.00025042	-0.47495	-0.00027681	582.8105971542775	78.812	0.65904	78.812	78.606	79.265	0					14	12	2	0	0	0	0.91556	1	28692	28692		14.838	12.994	1	1629400			8021	29512	5751	5801	7797	7797					0.03214557720752964
EDLEQVRQELY	11	Unmodified	_EDLEQVRQELY_					0	0	0		ENSG00000138587|ENST00000260453|MNS1	ENSG00000138587|ENST00000260453|MNS1	ENSG00000138587|ENST00000260453|MNS1	MSMS	A375_MHC_IP_R1	1	711.2891235351562	2	711.348988	1420.68342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.434	1	94.434	93.934	94.934	0								0	0	0	0.1629	1	34710	34710		3.5965	0	1				8022	5000	5752	5802	7798	7798					-0.010090901697367372
EDLFDDDDI	9	Unmodified	_EDLFDDDDI_					0	0	0		ENSG00000172428|ENST00000607357|COPS9;ENST00000489698.1_1_2:241070470-241075392:-|nuORF;nc|ENSG00000172428|Q8WXC6-1|COPS9	ENSG00000172428|ENST00000607357|COPS9	ENSG00000172428|ENST00000607357|COPS9	MULTI-MSMS	A375_MHC_IP_R1	1	549.6793823242188	2	548.719484	1095.42441	-0.27818	-0.00015264	0.62998	0.00034568	0.3518	0.00019304	548.7200117216402	108.63	0.65856	108.63	108.31	108.97	0					19	12	3	0	0	0	0.6898	1	39821	39821		7.9102	0.62092	1	1951000			8023	7710	5753	5803	7799	7799					-0.11948041131722675
EDLFDYDQF	9	Unmodified	_EDLFDYDQF_					0	0	0			REV__tr|U7SZK3|U7SZK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00782PE=4SV=1	REV__tr|U7SZK3|U7SZK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00782PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	596.6536254882812	2	596.245669	1190.47678	-0.55857	-0.00033305	-3.4174	-0.0020376	-3.9759	-0.0023706	596.2433372565791	76.586	0.45734	77.327	76.994	77.451	0.74052					12	8	2	0	0	0	0.63811	2	29031	29031;29045		12.532	5.2423	1	1763200	+		8024	28651	5754	5804	7800;7801	7800					-0.11083457998097401
EDLFNKKVD	9	Unmodified	_EDLFNKKVD_					0	0	0			REV__CD2AP|p.S582F|2|0.42|ENSG00000198087|chr6:47609235-47609235|C/T|missense_variant	REV__CD2AP|p.S582F|2|0.42|ENSG00000198087|chr6:47609235-47609235|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	553.7037963867188	2	554.287671	1106.56079	-0.42732	-0.00023686	1.0295	0.00057064	0.60219	0.00033379	554.288402922818	35.294	0.40731	35.294	35.013	35.421	0					13	7	2	0	0	0	0.75164	1	11632	11632		5.7319	0	1	1900900	+		8025	15611	5755	5805	7802	7802					0.011771178894832701
EDLFRHRN	8	Unmodified	_EDLFRHRN_					0	0	0		nc|ENSG00000136449|Q8TBZ2|MYCBPAP;ENSG00000136449|ENST00000323776|MYCBPAP	nc|ENSG00000136449|Q8TBZ2|MYCBPAP	nc|ENSG00000136449|Q8TBZ2|MYCBPAP	MULTI-SECPEP	A375_MHC_IP_R1	1	543.7498779296875	2	543.775597	1085.53664	-0.34642	-0.00018837	1.4947	0.00081276	1.1482	0.00062438	543.7768404162914	42.917	0.76241	42.917	42.638	43.4	0					20	14	2	0	0	0	0.84748	1	15003	15003		28.487	3.0875	1	3073100			8026	4789	5756	5806	7803	7803					-0.002706777535195215
EDLIDSLVQL	10	Unmodified	_EDLIDSLVQL_					0	0	0			REV__tr|U7T256|U7T256_FUSNUReplicativeDNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00477PE=3SV=1	REV__tr|U7T256|U7T256_FUSNUReplicativeDNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00477PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	572.681884765625	2	572.808436	1143.60232	-0.24515	-0.00014043	0.11129	6.375E-05	-0.13386	-7.6676E-05	572.808854405219	76.592	0.55833	77.333	76.943	77.501	0.74052					20	10	3	0	0	0	0.85226	1	28947	28947		14.838	0	1	1158700	+		8027	28721	5757	5807	7804	7804					0.03626253858146811
EDLKKLTP	8	Unmodified	_EDLKKLTP_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2	REV__ENSG00000181555|ENST00000409792|SETD2	MULTI-MSMS	A375_MHC_IP_R1	1	945.7957763671875	1	943.545874	942.538597	0.20343	0.00019194	-0.47853	-0.00045152	-0.2751	-0.00025957	943.5455490404809	106.74	0.66359	106.74	106.37	107.03	0					28	12	4	0	0	0	0.73946	1	39114	39114		23.148	3.8914	1	8358900	+		8028	21657	5758	5808	7805	7805					0.06502938211713172
EDLLENLSFPD	11	Unmodified	_EDLLENLSFPD_					0	0	0			REV__ENSG00000146918|ENST00000356309|NCAPG2	REV__ENSG00000146918|ENST00000356309|NCAPG2	MULTI-MSMS	A375_MHC_IP_R2	2	431.6063537597656	3	431.206597	1290.59796	-0.67988	-0.00029317	0.078206	3.3723E-05	-0.60168	-0.00025945	431.2066186605664	34.013	0.40421	34.765	34.5	34.904	0.75225					16	7	3	0	0	0	0.57844	2	12219	12219;12268		19.987	10.743	1	6486000	+		8029	19558	5759	5809	7806;7807	7806					-0.035712553554503756
EDLLLLNL	8	Unmodified	_EDLLLLNL_					0	0	0		ENST00000480169.1_1_1:40205875-40207612:+|nuORF	ENST00000480169.1_1_1:40205875-40207612:+|nuORF	ENST00000480169.1_1_1:40205875-40207612:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	946.8838500976562	1	942.550625	941.543348	-0.052785	-4.9753E-05	-0.099488	-9.3772E-05	-0.15227	-0.00014353	942.5504592111624	116.59	1.2686	117.25	116.92	118.19	0.65961					75	24	5	0	0	0	0.77624	1	43986	43986		8.5933	0	1	542870000			8030	12491	5760	5810	7808	7808					0.07023822354460663
EDLLPVYKEKV	11	Unmodified	_EDLLPVYKEKV_					0	0	0		ENST00000468392.5_1_21:45165928-45175941:+|nuORF;nc|ENSG00000160209|O00764-3|PDXK;nc|ENSG00000160209|O00764-2|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK	ENST00000468392.5_1_21:45165928-45175941:+|nuORF	ENST00000468392.5_1_21:45165928-45175941:+|nuORF	MSMS	A375_MHC_IP_R2	2	666.8031616210938	2	666.874111	1331.73367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.72	1	117.38	116.88	117.88	0.65962								0	0	0	0.15694	1	44128	44128		16.149	7.4037	1				8031	6404	5761	5811	7809	7809					0.0810706422603289
EDLLSQFLN	9	Unmodified	_EDLLSQFLN_					0	0	0			REV__nc|ENSG00000099331|Q13459-2|MYO9B	REV__nc|ENSG00000099331|Q13459-2|MYO9B	MULTI-MSMS	A375_MHC_IP_R1	1	539.7007446289062	2	539.774396	1077.53424	-0.53545	-0.00028902	-2.1399	-0.0011551	-2.6754	-0.0014441	540.2735502221217	62.692	0.51102	62.692	62.403	62.914	0					13	9	2	0	0	0	0.38603	1	22601	22601		25.399	1.3787	1	888620	+		8032	17018	5762	5812	7810	7810					-0.0014257100183385774
EDLLSQFLN	9	Unmodified	_EDLLSQFLN_					0	0	0			REV__nc|ENSG00000099331|Q13459-2|MYO9B	REV__nc|ENSG00000099331|Q13459-2|MYO9B	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	539.774396	1077.53424	-0.53545	-0.00028902	-2.1399	-0.0011551	-2.6754	-0.0014441	540.2735502221217	62.692	0.51102	62.692	62.403	62.914	0	0	0	NaN	25.399	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	888620	+		8033	17018	5762	5812							-0.0014257100183385774
EDLNDIFVNY	10	Unmodified	_EDLNDIFVNY_					0	0	0			REV__ENSG00000101945|ENST00000376687|SUV39H1	REV__ENSG00000101945|ENST00000376687|SUV39H1	MULTI-MSMS	A375_MHC_IP_R1	1	621.2134399414062	2	621.287868	1240.56118	-0.37546	-0.00023327	0.18356	0.00011404	-0.1919	-0.00011922	621.2881787677497	62.132	0.56293	62.132	61.737	62.3	0					13	10	2	0	0	0	0.5761	1	22446	22446		22.658	7.8198	1	1370700	+		8034	17192	5763	5813	7811	7811					-0.049475071813049
EDLNDIFVNY	10	Unmodified	_EDLNDIFVNY_					0	0	0			REV__ENSG00000101945|ENST00000376687|SUV39H1	REV__ENSG00000101945|ENST00000376687|SUV39H1	MULTI-MSMS	A375_MHC_IP_R2	2	621.2139282226562	2	621.287868	1240.56118	-1.0425	-0.0006477	0.38598	0.00023981	-0.65652	-0.00040789	621.2880065031908	61.519	0.40264	62.264	61.919	62.322	0.74503					11	7	2	0	0	0	0.57505	1	23280	23280		22.736	3.3743	1	1711000	+		8035	17192	5763	5813	7812	7812					-0.049475071813049
EDLNDIFVNY	10	Unmodified	_EDLNDIFVNY_					0	0	0			REV__ENSG00000101945|ENST00000376687|SUV39H1	REV__ENSG00000101945|ENST00000376687|SUV39H1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	621.287868	1240.56118	-0.37546	-0.00023327	0.18356	0.00011404	-0.1919	-0.00011922	621.2881787677497	62.132	0.56293	62.132	61.737	62.3	0	-0.065907	-0.00012203	NaN	22.736	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1370700	+		8036	17192	5763	5813							-0.049475071813049
EDLNKLRDK	9	Unmodified	_EDLNKLRDK_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	MULTI-SECPEP	A375_MHC_IP_R1	1	565.142333984375	2	565.811845	1129.60914	-0.27424	-0.00015517	4.0573	0.0022957	3.7831	0.0021405	565.8138822331057	56.514	0.4571	56.514	56.244	56.701	0					18	8	3	0	0	0	0.67483	1	20157	20157		14.838	0	1	1471800	+		8037	18329	5764	5814	7813	7813					0.049516115293727125
EDLNNNQTL	9	Unmodified	_EDLNNNQTL_					0	0	0			REV__tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1	REV__tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	530.6929321289062	2	530.74891	1059.48327	-0.77594	-0.00041183	1.958	0.0010392	1.182	0.00062737	530.749836778004	35.938	0.51064	36.701	36.435	36.946	0.76338					10	7	2	0	0	0	0.4867	1	13072	13072		20.454	1.0146	1	2000800	+		8038	28831	5765	5815	7814	7814					-0.044095200466927054
EDLPTSDSTV	10	Unmodified	_EDLPTSDSTV_					0	0	0		PDPN|p.E87D|1|0.24|ENSG00000162493|chr1:13610446-13610446|A/T|missense_variant	PDPN|p.E87D|1|0.24|ENSG00000162493|chr1:13610446-13610446|A/T|missense_variant	PDPN|p.E87D|1|0.24|ENSG00000162493|chr1:13610446-13610446|A/T|missense_variant	MSMS	A375_MHC_IP_R1	1	532.1832275390625	2	532.243126	1062.4717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.118	1	36.118	35.618	36.618	0								0	0	0	0.14862	1	12063	12063		20.454	0	1				8039	15155	5766	5816	7815	7815					-0.057037618607182594
EDLQQKQELYQ	11	Unmodified	_EDLQQKQELYQ_					0	0	0			REV__RPGRIP1L|p.I1149Ffs*6|1|0.8|ENSG00000103494|chr16:53619196-53619196|T/-|frameshift_variant	REV__RPGRIP1L|p.I1149Ffs*6|1|0.8|ENSG00000103494|chr16:53619196-53619196|T/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	711.2568359375	2	711.348988	1420.68342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.205	1	57.205	56.705	57.705	0								0	0	0	0.16213	1	20514	20514		7.609	2.3121	1		+		8040	17280	5767	5817	7816	7816					-0.010090901697367372
EDLRGYLKRYR	11	Unmodified	_EDLRGYLKRYR_					0	0	0		ENST00000378244.6_1_12:100631797-100635442:-|nuORF;ENST00000549100.5_1_12:100631797-100646034:-|nuORF	ENST00000378244.6_1_12:100631797-100635442:-|nuORF	ENST00000378244.6_1_12:100631797-100635442:-|nuORF	MSMS	A375_MHC_IP_R1	1	734.7969360351562	2	734.904599	1467.79465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.63	1	108.63	108.13	109.13	0								0	0	0	0.16307	1	39851	39851		2.7352	0	1				8041	11310	5768	5818	7817	7817					0.07946014048843608
EDLRLFYVTK	10	Unmodified	_EDLRLFYVTK_					0	0	0			REV__tr|U7SN97|U7SN97_FUSNUMolybdopterin-guaninedinucleotidebiosynthesisproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01866PE=4SV=1	REV__tr|U7SN97|U7SN97_FUSNUMolybdopterin-guaninedinucleotidebiosynthesisproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01866PE=4SV=1	MSMS	A375_MHC_IP_R2	2	428.6381530761719	3	428.571322	1282.69214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.286	1	24.929	24.429	25.429	0.64368								0	0	0	0.15506	1	7955	7955		4.4062	0.81348	1		+		8042	28316	5769	5819	7818	7818					0.06209928257339925
EDLSAAKQQFL	11	Unmodified	_EDLSAAKQQFL_					0	0	0			REV__nc|ENSG00000072195|Q15772-1|SPEG	REV__nc|ENSG00000072195|Q15772-1|SPEG	MULTI-MSMS	A375_MHC_IP_R1	1	625.7241821289062	2	625.324785	1248.63502	-0.74443	-0.00046551	-0.17514	-0.00010952	-0.91956	-0.00057502	625.3246076727465	84.741	0.81866	84.741	84.442	85.261	0					35	15	3	0	0	0	0.4957	1	31042	31042		45.74	3.4274	1	7515600	+		8043	16601	5770	5820	7819	7819					0.02064460981000593
EDLSAAKQQFL	11	Unmodified	_EDLSAAKQQFL_					0	0	0			REV__nc|ENSG00000072195|Q15772-1|SPEG	REV__nc|ENSG00000072195|Q15772-1|SPEG	MULTI-SECPEP	A375_MHC_IP_R1	1	624.6786499023438	2	625.324785	1248.63502	-0.74443	-0.00046551	-0.17514	-0.00010952	-0.91956	-0.00057502	625.3246076727465	84.741	0.81866	84.741	84.442	85.261	0					35	15	3	0	0	0	0.90409	1	31088	31088		40.239	8.2017	1	7515600	+		8044	16601	5770	5820	7820	7820					0.02064460981000593
EDLSEYKF	8	Unmodified	_EDLSEYKF_					0	0	0		nc|ENSG00000137474|Q13402-5|MYO7A;nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;ENST00000481328.7_1_11:76890894-76905079:+|nuORF;nc|ENSG00000137474|Q13402-3|MYO7A;nc|ENSG00000137474|Q13402-4|MYO7A	nc|ENSG00000137474|Q13402-5|MYO7A	nc|ENSG00000137474|Q13402-5|MYO7A	MULTI-MSMS	A375_MHC_IP_R1	1	515.6914672851562	2	515.740022	1029.46549	-0.52927	-0.00027297	-1.1701	-0.00060349	-1.6994	-0.00087646	515.7391095358022	33.929	1.5682	33.929	32.989	34.557	0					42	30	2	0	0	0	0.76654	1	11311	11311		15.847	4.2069	1	2079500			8045	4886	5771	5821	7821	7821					-0.048062353015666304
EDLSQHPAGY	10	Unmodified	_EDLSQHPAGY_					0	0	0		ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	MULTI-SECPEP	A375_MHC_IP_R2	2	558.6717529296875	2	558.751453	1115.48835	-0.71572	-0.00039991	-0.044428	-2.4824E-05	-0.76015	-0.00042473	558.7514708362046	31.961	0.55677	32.698	32.504	33.061	0.73691					22	10	3	0	0	0	0.56504	1	11294	11294		34.402	0.95682	1	3598400			8046	7641	5772	5822	7822	7822					-0.0647721618408923
EDLTARKYTSM	11	Unmodified	_EDLTARKYTSM_					0	0	0			REV__ENST00000526194.5_1_1:21560049-21616919:-|nuORF	REV__ENST00000526194.5_1_1:21560049-21616919:-|nuORF	MSMS	A375_MHC_IP_R2	2	438.9685974121094	3	438.88346	1313.62855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.757	1	21.367	20.867	21.867	0.61029								0	0	0	0.16307	1	6487	6487		1.1098	0	1		+		8047	18000	5773	5823	7823	7823					-0.01571800242027166
EDLTLTFSSD	10	Unmodified	_EDLTLTFSSD_					0	0	0		nc|ENSG00000135870|Q5TC82-2|RC3H1	nc|ENSG00000135870|Q5TC82-2|RC3H1	nc|ENSG00000135870|Q5TC82-2|RC3H1	MSMS	A375_MHC_IP_R2	2	564.15673828125	2	564.258776	1126.503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.092	1	19.695	19.195	20.195	0.60308								0	0	0	0.15451	1	5825	5825		6.2058	0.47393	1				8048	14618	5774	5824	7824	7824					-0.05519188826588106
EDLWEKLQYLW	11	Unmodified	_EDLWEKLQYLW_					0	0	0		ENST00000503808.5_1_4:57204874-57250274:-|nuORF;nc|ENSG00000157426|Q4L235-3|AASDH;nc|ENSG00000157426|Q4L235-4|AASDH;nc|ENSG00000157426|Q4L235-2|AASDH;ENSG00000157426|ENST00000205214|AASDH	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	MSMS	A375_MHC_IP_R2	2	761.7843017578125	2	761.882467	1521.75038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.4	1	114.11	113.61	114.61	0.70985								0	0	0	0.16297	1	42758	42758		3.2813	0.28607	1				8049	6243	5775	5825	7825	7825					0.010375651120057228
EDLWRDFDP	9	Unmodified	_EDLWRDFDP_					0	0	0			REV__ENSG00000074696|ENST00000261875|HACD3	REV__ENSG00000074696|ENST00000261875|HACD3	MSMS	A375_MHC_IP_R1	1	596.6652221679688	2	596.767103	1191.51965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.809	1	82.809	82.309	83.309	0								0	0	0	0.15486	1	30288	30288		7.9102	0.62092	1		+		8050	16640	5776	5826	7826	7826					-0.06844643149997864
EDLYDVYNTQ	10	Unmodified	_EDLYDVYNTQ_					0	0	0			REV__ENST00000209929.9_1_1:171154426-171178089:+|nuORF	REV__ENST00000209929.9_1_1:171154426-171178089:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	630.6743774414062	2	630.274958	1258.53536	-1.0985	-0.00069236	0.48172	0.00030362	-0.61678	-0.00038874	630.2751154193	49.453	0.863	50.211	49.894	50.757	0.75736					30	16	3	0	0	0	0.90513	1	18564	18564		8.1555	0.54658	1	5925200	+		8051	16986	5777	5827	7827	7827					-0.08356401423611715
EDLYSRYKKLQ	11	Unmodified	_EDLYSRYKKLQ_					0	0	0		ENSG00000013275|ENST00000157812|PSMC4;ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;ENST00000601697.5_1_19:40477100-40486546:+|nuORF	ENSG00000013275|ENST00000157812|PSMC4	ENSG00000013275|ENST00000157812|PSMC4	MULTI-MSMS	A375_MHC_IP_R1	1	722.2847900390625	2	721.885541	1441.75653	-0.58014	-0.00041879	0.44458	0.00032094	-0.13555	-9.7854E-05	721.8858244891104	83.365	0.66083	83.365	83.024	83.685	0					27	12	3	0	0	0	0.63737	1	30483	30483		20.415	1.0526	1	7543200			8052	1016	5778	5828	7828	7828					0.053320833435236636
EDLYSRYKKLQ	11	Unmodified	_EDLYSRYKKLQ_					0	0	0		ENSG00000013275|ENST00000157812|PSMC4;ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;ENST00000601697.5_1_19:40477100-40486546:+|nuORF	ENSG00000013275|ENST00000157812|PSMC4	ENSG00000013275|ENST00000157812|PSMC4	MULTI-MSMS	A375_MHC_IP_R2	2	722.2844848632812	2	721.885541	1441.75653	-0.79424	-0.00057335	0.17885	0.00012911	-0.61539	-0.00044424	721.885508952294	82.591	0.6057	83.334	83.042	83.648	0.74293					32	11	4	0	0	0	0.56199	1	31353	31353		26.268	0	1	7465800			8053	1016	5778	5828	7829	7829					0.053320833435236636
EDLYSRYKKLQ	11	Unmodified	_EDLYSRYKKLQ_					0	0	0		ENSG00000013275|ENST00000157812|PSMC4;ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;ENST00000601697.5_1_19:40477100-40486546:+|nuORF	ENSG00000013275|ENST00000157812|PSMC4	ENSG00000013275|ENST00000157812|PSMC4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	721.885541	1441.75653	-0.58014	-0.00041879	0.44458	0.00032094	-0.13555	-9.7854E-05	721.8858244891104	83.365	0.66083	83.365	83.024	83.685	0	0.015362	0.00016413	NaN	26.268	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7543200			8054	1016	5778	5828							0.053320833435236636
EDLYSRYKKLQ	11	Unmodified	_EDLYSRYKKLQ_					0	0	0		ENSG00000013275|ENST00000157812|PSMC4;ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;ENST00000601697.5_1_19:40477100-40486546:+|nuORF	ENSG00000013275|ENST00000157812|PSMC4	ENSG00000013275|ENST00000157812|PSMC4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	721.885541	1441.75653	-0.79424	-0.00057335	0.17885	0.00012911	-0.61539	-0.00044424	721.885508952294	82.591	0.6057	83.334	83.042	83.648	0.74293	-0.015362	-0.00021953	NaN	26.268	32	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7465800			8055	1016	5778	5828							0.053320833435236636
EDLYYNHNE	9	Unmodified	_EDLYYNHNE_					0	0	0			REV__ENSG00000158683|ENST00000289672|PKD1L1	REV__ENSG00000158683|ENST00000289672|PKD1L1	MULTI-SECPEP	A375_MHC_IP_R1	1	598.6319580078125	2	598.746367	1195.47818	-0.49334	-0.00029539	0.22423	0.00013426	-0.26911	-0.00016113	598.7462293400595	27.53	0.30304	27.53	27.432	27.735	0					9	5	2	0	0	0	0.74412	1	8393	8393		14.838	14.838	1	1588100	+		8056	20086	5779	5829	7830	7830					-0.11173823909348357
EDMASEHGSG	10	Unmodified	_EDMASEHGSG_					0	0	0			REV__ENST00000318787.13_1_6:125597055-125597142:-|nuORF	REV__ENST00000318787.13_1_6:125597055-125597142:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1018.8194580078125	1	1019.37346	1018.36619	0.38912	0.00039666	-2.184	-0.0022263	-1.7949	-0.0018297	1019.3734744297075	117.38	0.15207	117.38	117.31	117.46	0					4	2	2	0	0	0	0.93799	1	43075	43075		6.7232	0.96273	1	5062300	+		8057	23555	5780	5830	7831	7831					-0.14226001257964072
EDMAVDQSIV	10	Unmodified	_EDMAVDQSIV_					0	0	0		nc|ENSG00000149474|Q9H8E8-2|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	MULTI-SECPEP	A375_MHC_IP_R1	1	553.7037963867188	2	553.755346	1105.49614	-0.4584	-0.00025384	2.6905	0.0014899	2.2321	0.001236	553.7559686419864	70.95	0.25749	70.95	70.85	71.108	0					5	4	2	0	0	0	0.8125	1	25770	25770		18.146	9.5531	1	441200			8058	5806	5781	5831	7832	7832					-0.052388249788464236
EDMEITSHYWH	11	Unmodified	_EDMEITSHYWH_					0	0	0		ZBTB46|p.R15W|1|0.52|ENSG00000130584|chr20:63790715-63790715|G/A|missense_variant	ZBTB46|p.R15W|1|0.52|ENSG00000130584|chr20:63790715-63790715|G/A|missense_variant	ZBTB46|p.R15W|1|0.52|ENSG00000130584|chr20:63790715-63790715|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	724.4349975585938	2	724.300984	1446.58741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.963	1	96.714	96.214	97.214	0.75045								0	0	0	0.16331	1	36444	36444		1.4819	0.15237	1				8059	30185	5782	5832	7833	7833					-0.11801561281504291
EDMENGGCEY	10	Unmodified	_EDMENGGCEY_					0	0	0		nc|ENSG00000147852|P98155-2|VLDLR;ENSG00000147852|ENST00000382100|VLDLR	nc|ENSG00000147852|P98155-2|VLDLR	nc|ENSG00000147852|P98155-2|VLDLR	MSMS	A375_MHC_IP_R1	1	573.6668090820312	2	573.689346	1145.36414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.809	1	87.809	87.309	88.309	0								0	0	0	0.15531	1	32227	32227		3.5965	1.2938	1				8060	5708	5783	5833	7834	7834					-0.20272798058090302
EDMGEPGSL	9	Unmodified	_EDMGEPGSL_					0	0	0			REV__ENSG00000187742|ENST00000375807|SECISBP2	REV__ENSG00000187742|ENST00000375807|SECISBP2	MULTI-MSMS	A375_MHC_IP_R1	1	468.0946350097656	2	467.694758	933.374962	-0.22374	-0.00010464	1.0639	0.00049756	0.84012	0.00039292	467.69494033004975	62.053	0.61492	62.053	61.839	62.454	0					16	11	2	0	0	0	0.5339	1	22438	22438		18.135	3.2967	1	1602900	+		8061	22043	5784	5834	7835	7835					-0.09439027621499463
EDMGEPGSL	9	Unmodified	_EDMGEPGSL_					0	0	0			REV__ENSG00000187742|ENST00000375807|SECISBP2	REV__ENSG00000187742|ENST00000375807|SECISBP2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	467.694758	933.374962	-0.22374	-0.00010464	1.0639	0.00049756	0.84012	0.00039292	467.69494033004975	62.053	0.61492	62.053	61.839	62.454	0	-0.046961	-0.00022099	NaN	18.135	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1602900	+		8062	22043	5784	5834							-0.09439027621499463
EDMSDEDFY	9	Unmodified	_EDMSDEDFY_					0	0	0			REV__nc|ENSG00000085224|P46100-2|ATRX	REV__nc|ENSG00000085224|P46100-2|ATRX	MSMS	A375_MHC_IP_R1	1	575.6422119140625	2	575.697694	1149.38084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.535	1	77.535	77.035	78.035	0								0	0	0	0.15486	1	28286	28286		4.756	0.42677	1		+		8063	16830	5785	5835	7836	7836					-0.187879739004984
EDMSDEDFY	9	Unmodified	_EDMSDEDFY_					0	0	0			REV__nc|ENSG00000085224|P46100-2|ATRX	REV__nc|ENSG00000085224|P46100-2|ATRX	MSMS	A375_MHC_IP_R1	1	575.68994140625	2	575.697694	1149.38084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.226	1	92.226	91.726	92.726	0								0	0	0	0.15486	1	33891	33891		2.3027	0	1		+		8064	16830	5785	5835	7837	7837					-0.187879739004984
EDNGIIKAF	9	Unmodified	_EDNGIIKAF_					0	0	0		ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135660-185136437:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	504.199951171875	2	503.763832	1005.51311	-0.77975	-0.00039281	0.75792	0.00038181	-0.021826	-1.0995E-05	503.7641984729013	68.133	0.506	68.133	67.804	68.31	0					18	9	2	0	0	0	0.05021	1	24699	24699		51.63	23.143	1	4284800			8065	7879	5786	5836	7838	7838					0.010574636892897615
EDNGIIKAF	9	Unmodified	_EDNGIIKAF_					0	0	0		ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135660-185136437:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1997375488281	2	503.763832	1005.51311	-0.67203	-0.00033854	0.37357	0.00018819	-0.29846	-0.00015035	503.76399919430105	67.345	0.50634	68.082	67.75	68.256	0.73631					20	9	3	0	0	0	0.31606	1	25492	25492		32.786	26.063	1	4543300			8066	7879	5786	5836	7839	7839					0.010574636892897615
EDNNQDEY	8	Unmodified	_EDNNQDEY_					0	0	0		nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	MSMS	A375_MHC_IP_R1	1	513.6502685546875	2	513.685975	1025.3574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.273	1	56.273	55.773	56.773	0								0	0	0	0.16876	1	20156	20156		5.7604	0	1				8067	1309	5787	5837	7840	7840					-0.15426651622806276
EDNNQDEY	8	Unmodified	_EDNNQDEY_					0	0	0		nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	MSMS	A375_MHC_IP_R2	2	513.6284790039062	2	513.685975	1025.3574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.531	1	42.305	41.805	42.805	0.77451								0	0	0	0.16876	1	15415	15415		5.7604	1.0044	1				8068	1309	5787	5837	7841	7841					-0.15426651622806276
EDNPCEGLS	9	Unmodified	_EDNPCEGLS_					0	0	0		nc|ENSG00000196557|O95180-2|CACNA1H;ENSG00000196557|ENST00000348261|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	MSMS	A375_MHC_IP_R1	1	482.1687927246094	2	482.189839	962.365126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.346	1	69.346	68.846	69.846	0								0	0	0	0.15486	1	25162	25162		7.9102	0	1				8069	9057	5788	5838	7842	7842					-0.11756215626871835
EDNPCEGLS	9	Unmodified	_EDNPCEGLS_					0	0	0		nc|ENSG00000196557|O95180-2|CACNA1H;ENSG00000196557|ENST00000348261|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	MSMS	A375_MHC_IP_R2	2	482.1684875488281	2	482.189839	962.365126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.508	1	69.243	68.743	69.743	0.73511								0	0	0	0.15486	1	25961	25961		7.9102	0	1				8070	9057	5788	5838	7843	7843					-0.11756215626871835
EDNPPYAYY	9	Unmodified	_EDNPPYAYY_					0	0	0		nc|ENSG00000116337|Q01433-4|AMPD2;ENST00000526301.5_1_1:110162158-110172443:+|nuORF;nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;ENSG00000116337|ENST00000528667|AMPD2;ENST00000532851.1_1_1:110171948-110172194:+|nuORF	nc|ENSG00000116337|Q01433-4|AMPD2	nc|ENSG00000116337|Q01433-4|AMPD2	MSMS	A375_MHC_IP_R1	1	566.195556640625	2	566.235104	1130.45566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.844	1	64.844	64.344	65.344	0								0	0	0	0.15486	1	23469	23469		13.508	4.9146	1				8071	14557	5789	5839	7844	7844					-0.10435423306944358
EDNPPYAYY	9	Unmodified	_EDNPPYAYY_					0	0	0		nc|ENSG00000116337|Q01433-4|AMPD2;ENST00000526301.5_1_1:110162158-110172443:+|nuORF;nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;ENSG00000116337|ENST00000528667|AMPD2;ENST00000532851.1_1_1:110171948-110172194:+|nuORF	nc|ENSG00000116337|Q01433-4|AMPD2	nc|ENSG00000116337|Q01433-4|AMPD2	MSMS	A375_MHC_IP_R2	2	566.1956787109375	2	566.235104	1130.45566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.034	1	64.774	64.274	65.274	0.74022								0	0	0	0.15486	1	24282	24282		13.508	6.7847	1				8072	14557	5789	5839	7845	7845					-0.10435423306944358
EDNPQTLLF	9	Unmodified	_EDNPQTLLF_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000107625|ENST00000373585|DDX50	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	A375_MHC_IP_R1	1	539.718994140625	2	538.766571	1075.51859	-0.53419	-0.0002878	0.35536	0.00019145	-0.17883	-9.6347E-05	538.766737271268	110.99	1.2276	110.99	110.59	111.82	0					76	23	5	0	0	0	0.10622	1	40655	40655		49.554	20.473	1	39660000			8073	6987	5790	5840	7846	7846					-0.016148575188935865
EDNPQTLLF	9	Unmodified	_EDNPQTLLF_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000107625|ENST00000373585|DDX50	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	A375_MHC_IP_R2	2	538.90087890625	2	538.766571	1075.51859	-0.70429	-0.00037945	0.03413	1.8388E-05	-0.67016	-0.00036106	538.766528044943	110.21	1.1732	110.94	110.53	111.7	0.73692					67	22	4	0	0	0	0.082375	2	41483	41483;41507		53.833	24.751	1	44015000			8074	6987	5790	5840	7847;7848	7847					-0.016148575188935865
EDNPQTLLF	9	Unmodified	_EDNPQTLLF_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000107625|ENST00000373585|DDX50	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	538.766571	1075.51859	-0.53419	-0.0002878	0.35536	0.00019145	-0.17883	-9.6347E-05	538.766737271268	110.99	1.2276	110.99	110.59	111.82	0	0.022511	0.00011643	NaN	53.833	76	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39660000			8075	6987	5790	5840							-0.016148575188935865
EDNRRPLW	8	Unmodified	_EDNRRPLW_					0	0	0		ENSG00000113263|ENST00000422843|ITK;ENST00000519402.5_1_5:156607865-156667213:+|nuORF;ITK|p.P161L|1|0.15|ENSG00000113263|chr5:157217894-157217894|C/T|missense_variant	ENSG00000113263|ENST00000422843|ITK	ENSG00000113263|ENST00000422843|ITK	MULTI-SECPEP	A375_MHC_IP_R1	1	362.9485778808594	3	362.521074	1084.54139	0.37551	0.00013613	-2.0822	-0.00075484	-1.7067	-0.00061871	362.52038311209213	35.638	0.71402	35.638	35.116	35.83	0					16	13	2	0	0	0	0.972	1	11868	11868		13.906	2.4113	1	1192500			8076	3135	5791	5841	7849	7849					0.0025020638922796934
EDNYHTSFLFG	11	Unmodified	_EDNYHTSFLFG_					0	0	0		ENSG00000111266|ENST00000298573|DUSP16	ENSG00000111266|ENST00000298573|DUSP16	ENSG00000111266|ENST00000298573|DUSP16	MULTI-SECPEP	A375_MHC_IP_R1	1	664.5093383789062	2	665.290942	1328.56733	-0.45874	-0.0003052	3.9064	0.0025989	3.4477	0.0022937	665.7953662167423	43.502	0.30315	43.502	43.3	43.603	0					8	5	2	0	0	0	0.99227	1	15159	15159		1.1933	0	1	1807100			8077	2979	5792	5842	7850	7850					-0.08380988949807033
EDPAAQMMRWW	11	Unmodified	_EDPAAQMMRWW_					0	0	0		ENST00000503201.1_1_5:142780375-142784063:-|nuORF	ENST00000503201.1_1_5:142780375-142784063:-|nuORF	ENST00000503201.1_1_5:142780375-142784063:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	474.6086120605469	3	474.209402	1419.60638	-0.56072	-0.0002659	-0.2976	-0.00014113	-0.85833	-0.00040703	474.20906072505124	31.982	0.40435	32.719	32.504	32.909	0.73692					20	7	4	0	0	0	0.73472	1	11332	11332		4.4062	0.28952	1	5429900			8078	12805	5793	5843	7851	7851					-0.0866430319142637
EDPAEAAQQL	10	Unmodified	_EDPAEAAQQL_					0	0	0		nc|ENSG00000167705|Q96NA2-2|RILP;ENSG00000167705|ENST00000301336|RILP	nc|ENSG00000167705|Q96NA2-2|RILP	nc|ENSG00000167705|Q96NA2-2|RILP	MULTI-MSMS	A375_MHC_IP_R2	2	536.2245483398438	2	536.251286	1070.48802	-0.8954	-0.00048016	0.26798	0.00014371	-0.62742	-0.00033645	536.2512031601227	30.32	1.4187	31.039	30.658	32.077	0.71857					57	27	4	0	0	0	0.69833	1	11041	11041		13.042	3.6593	1	34197000			8079	7215	5794	5844	7852	7852					-0.04440635903961265
EDPCNWQCY	9	Unmodified	_EDPCNWQCY_					0	0	0		nc|ENSG00000196660|Q6XR72-2|SLC30A10;ENST00000484079.1_1_1:220088793-220091843:-|nuORF;ENST00000356609.2_1_1:220088793-220101375:-|nuORF;ENSG00000196660|ENST00000366926|SLC30A10	nc|ENSG00000196660|Q6XR72-2|SLC30A10	nc|ENSG00000196660|Q6XR72-2|SLC30A10	MSMS	A375_MHC_IP_R2	2	579.1986694335938	2	579.204967	1156.39538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.904	1	64.644	64.144	65.144	0.74022								0	0	0	0.15486	1	24233	24233		4.3292	0.38484	1				8080	9071	5795	5845	7853	7853					-0.17656180233325358
EDPDLQQWEE	10	Unmodified	_EDPDLQQWEE_					0	0	0			REV__ENSG00000146587|ENST00000396912|RBAK;REV__RBAK|p.H529Tfs*178|1|0.36|ENSG00000146587|chr7:5065038-5065038|G/-|frameshift_variant	REV__RBAK|p.H529Tfs*178|1|0.36|ENSG00000146587|chr7:5065038-5065038|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	644.9974975585938	2	644.770039	1287.52553	-0.50315	-0.00032442	-0.35197	-0.00022694	-0.85512	-0.00055136	644.7696836645603	46.825	0.50693	47.587	47.361	47.867	0.76128					11	9	2	0	0	0	0.9269	1	17646	17646		6.7232	3.1267	1	1020900	+		8081	19544;27871	5796	5846	7854	7854					-0.10673589428984087
EDPDLQRW	8	Unmodified	_EDPDLQRW_					0	0	0			REV__ENST00000418756.5_1_7:75141716-75156997:-|nuORF	REV__ENST00000418756.5_1_7:75141716-75156997:-|nuORF	MSMS	A375_MHC_IP_R1	1	529.71044921875	2	529.748713	1057.48287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.196	1	74.196	73.696	74.696	0								0	0	0	0.16876	1	27025	27025		23.148	7.3012	1		+		8082	24562	5797	5847	7855	7855					-0.04356894975921932
EDPDLQRW	8	Unmodified	_EDPDLQRW_					0	0	0			REV__ENST00000418756.5_1_7:75141716-75156997:-|nuORF	REV__ENST00000418756.5_1_7:75141716-75156997:-|nuORF	MSMS	A375_MHC_IP_R1	1	529.6463623046875	2	529.748713	1057.48287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.297	1	74.297	73.797	74.797	0								0	0	0	0.16876	1	27061	27061		23.148	6.0355	1		+		8083	24562	5797	5847	7856	7856					-0.04356894975921932
EDPEEDLSET	10	Unmodified	_EDPEEDLSET_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.R305Afs*2|1|0.44|ENSG00000111642|chr12:6600941-6600942|-/T|frameshift_variant	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	A375_MHC_IP_R1	1	582.1790161132812	2	582.232955	1162.45136	-0.2906	-0.0001692	-0.16283	-9.4804E-05	-0.45343	-0.000264	582.2328826266527	77.048	0.86415	77.048	76.622	77.486	0					34	16	3	0	0	0	0.63639	1	28105	28105		18.146	2.2992	1	5275800			8084	3005	5798	5848	7857	7857					-0.12336977311178998
EDPFEKPLI	9	Unmodified	_EDPFEKPLI_					0	0	0		ENSG00000188993|ENST00000682860|LRRC66	ENSG00000188993|ENST00000682860|LRRC66	ENSG00000188993|ENST00000682860|LRRC66	MULTI-MSMS	A375_MHC_IP_R1	1	544.6867065429688	2	544.28714	1086.55973	-0.4956	-0.00026975	0.28337	0.00015424	-0.21223	-0.00011551	544.287218669386	97.756	0.66105	97.756	97.44	98.101	0					31	12	4	0	0	0	0.52905	1	35901	35901		25.399	0	1	6335100			8085	8950	5799	5849	7858	7858					0.019909035205728287
EDPGKNETY	9	Unmodified	_EDPGKNETY_					0	0	0		nc|ENSG00000111199|Q9HBA0-6|TRPV4;nc|ENSG00000111199|Q9HBA0-2|TRPV4;nc|ENSG00000111199|Q9HBA0-4|TRPV4;nc|ENSG00000111199|Q9HBA0-5|TRPV4;nc|ENSG00000111199|Q9HBA0-3|TRPV4;ENSG00000111199|ENST00000261740|TRPV4	nc|ENSG00000111199|Q9HBA0-6|TRPV4	nc|ENSG00000111199|Q9HBA0-6|TRPV4	MULTI-MSMS	A375_MHC_IP_R1	1	526.675048828125	2	526.730186	1051.44582	-0.64401	-0.00033922	-0.041147	-2.1673E-05	-0.68516	-0.00036089	526.7299507282714	27.129	1.0086	27.129	26.878	27.887	0					35	19	3	0	0	0	0.70307	1	8386	8386		6.7232	0.99131	1	8855600			8086	2970	5800	5850	7859	7859					-0.07784611312331435
EDPHARGP	8	Unmodified	_EDPHARGP_					0	0	0		ENST00000315251.10_1_3:53857337-53857781:-|nuORF	ENST00000315251.10_1_3:53857337-53857781:-|nuORF	ENST00000315251.10_1_3:53857337-53857781:-|nuORF	MSMS	A375_MHC_IP_R2	2	439.77313232421875	2	439.709391	877.404229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.439	1	21.049	20.549	21.549	0.61029								0	0	0	0.16876	1	6362	6362		5.7604	0.52976	1				8087	10653	5801	5851	7860	7860					-0.039377024903274105
EDPQIQAH	8	Unmodified	_EDPQIQAH_					0	0	0		ENSG00000042429|ENST00000251871|MED17	ENSG00000042429|ENST00000251871|MED17	ENSG00000042429|ENST00000251871|MED17	MSMS	A375_MHC_IP_R1	1	469.1487121582031	2	469.222331	936.430109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.389	1	35.389	34.889	35.889	0								0	0	0	0.16876	1	11768	11768		34.187	13.734	1				8088	1173	5802	5852	7861	7861					-0.040648530387102255
EDPQIQAH	8	Unmodified	_EDPQIQAH_					0	0	0		ENSG00000042429|ENST00000251871|MED17	ENSG00000042429|ENST00000251871|MED17	ENSG00000042429|ENST00000251871|MED17	MSMS	A375_MHC_IP_R2	2	469.14801025390625	2	469.222331	936.430109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.554	1	35.311	34.811	35.811	0.75652								0	0	0	0.16876	1	12476	12476		34.187	16.052	1				8089	1173	5802	5852	7862	7862					-0.040648530387102255
EDPRSKRGH	9	Unmodified	_EDPRSKRGH_					0	0	0			REV__ROBO1|p.N1088Sfs*50|1|0.03|ENSG00000169855|chr3:78635883-78635884|-/AGTGGCAGTGTATTGTGAAAGC|frameshift_variant	REV__ROBO1|p.N1088Sfs*50|1|0.03|ENSG00000169855|chr3:78635883-78635884|-/AGTGGCAGTGTATTGTGAAAGC|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	540.5111694335938	2	541.278503	1080.54245	-0.82353	-0.00044576	-3.3049	-0.0017889	-4.1284	-0.0022346	541.2750180661457	85.057	0.20326	85.057	84.955	85.159	0					5	3	2	0	0	0	0.67483	1	31170	31170		10.074	0	1	398800	+		8090	27892	5803	5853	7863	7863					0.005404207581477749
EDPSSTSHSVS	11	Unmodified	_EDPSSTSHSVS_					0	0	0		ENST00000468090.5_1_21:45181177-45181723:+|nuORF	ENST00000468090.5_1_21:45181177-45181723:+|nuORF	ENST00000468090.5_1_21:45181177-45181723:+|nuORF	MSMS	A375_MHC_IP_R1	1	566.70556640625	2	566.741282	1131.46801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.056	1	34.056	33.556	34.556	0								0	0	0	0.16124	1	11186	11186		12.241	3.4953	1				8091	12295	5804	5854	7864	7864					-0.09246431634574037
EDPVKFHEAW	10	Unmodified	_EDPVKFHEAW_					0	0	0		ENSG00000047230|ENST00000359276|CTPS2	ENSG00000047230|ENST00000359276|CTPS2	ENSG00000047230|ENST00000359276|CTPS2	MULTI-SECPEP	A375_MHC_IP_R1	1	629.6976928710938	2	629.29857	1256.58259	-0.68555	-0.00043141	-0.00084088	-5.2916E-07	-0.68639	-0.00043194	629.2987066099361	76.474	0.35305	76.474	76.269	76.622	0					14	6	3	0	0	0	0.7212	1	27905	27905		26.268	0	1	2190700			8092	1195	5805	5855	7865	7865					-0.03544077361948439
EDPVKFHEAW	10	Unmodified	_EDPVKFHEAW_					0	0	0		ENSG00000047230|ENST00000359276|CTPS2	ENSG00000047230|ENST00000359276|CTPS2	ENSG00000047230|ENST00000359276|CTPS2	MULTI-MSMS	A375_MHC_IP_R2	2	629.697998046875	2	629.29857	1256.58259	-0.81578	-0.00051337	-0.12848	-8.0854E-05	-0.94426	-0.00059422	629.2985148247858	75.741	0.40871	76.481	76.232	76.64	0.74052					16	7	3	0	0	0	0.57505	1	28754	28754		22.736	1.1461	1	2404000			8093	1195	5805	5855	7866	7866					-0.03544077361948439
EDPYEYICMK	10	Unmodified	_EDPYEYICMK_					0	0	0		ENST00000451446.1_1_13:24697062-24697869:-|nuORF	ENST00000451446.1_1_13:24697062-24697869:-|nuORF	ENST00000451446.1_1_13:24697062-24697869:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	644.9974975585938	2	645.772682	1289.53081	-0.48619	-0.00031397	2.4918	0.0016091	2.0056	0.0012952	645.7745688149045	47.099	0.66137	47.86	47.361	48.022	0.76128					15	12	2	0	0	0	0.85226	1	17646	17646		10.074	6.4774	1	1306600			8094	12073	5806	5856	7867	7867					-0.10237325162393063
EDPYKGYRYLY	11	Unmodified	_EDPYKGYRYLY_					0	0	0		nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA	nc|ENSG00000278540|Q13085|ACACA	nc|ENSG00000278540|Q13085|ACACA	MSMS	A375_MHC_IP_R1	1	734.1698608398438	2	733.851167	1465.68778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.37	1	102.37	101.87	102.87	0								0	0	0	0.16297	1	37623	37623		3.2813	0.28607	1				8095	10037	5807	5857	7868	7868					-0.026435809561689894
EDQALAEW	8	Unmodified	_EDQALAEW_					0	0	0			REV__ENSG00000178217|ENST00000646907|SH2D4B	REV__ENSG00000178217|ENST00000646907|SH2D4B	MULTI-SECPEP	A375_MHC_IP_R2	2	480.4718017578125	2	481.216714	960.418876	-0.59705	-0.00028731	-0.40849	-0.00019657	-1.0055	-0.00048388	481.2164178340036	31.412	0.46037	32.131	31.872	32.332	0.71857					11	8	2	0	0	0	0.972	1	11113	11113		0.69038	0	1	1075500	+		8096	21495	5808	5858	7869	7869					-0.06291675132865748
EDQDDDDDAY	10	Unmodified	_EDQDDDDDAY_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	MSMS	A375_MHC_IP_R2	2	600.6776123046875	2	600.694194	1199.37384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.49	1	104.25	103.75	104.75	0.76428								0	0	0	0.15585	1	39192	39192		1.8442	1.0506	1				8097	8485	5809	5859	7870	7870					-0.21787615247353642
EDQEMCYEF	9	Unmodified	_EDQEMCYEF_					0	0	0		SPINK5|p.H31Y|1|0.22|ENSG00000133710|chr5:148070332-148070332|C/T|missense_variant	SPINK5|p.H31Y|1|0.22|ENSG00000133710|chr5:148070332-148070332|C/T|missense_variant	SPINK5|p.H31Y|1|0.22|ENSG00000133710|chr5:148070332-148070332|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	597.2086181640625	2	597.209914	1192.40528	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.224	1	90.224	89.724	90.724	0								0	0	0	0.15486	1	33155	33155		7.9102	2.1497	1				8098	29235	5810	5860	7871	7871					-0.18323037018649302
EDQEMCYEF	9	Unmodified	_EDQEMCYEF_					0	0	0		SPINK5|p.H31Y|1|0.22|ENSG00000133710|chr5:148070332-148070332|C/T|missense_variant	SPINK5|p.H31Y|1|0.22|ENSG00000133710|chr5:148070332-148070332|C/T|missense_variant	SPINK5|p.H31Y|1|0.22|ENSG00000133710|chr5:148070332-148070332|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	597.2083740234375	2	597.209914	1192.40528	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.016	1	87.749	87.249	88.249	0.733								0	0	0	0.15411	1	33090	33090		14.838	9.0778	1				8099	29235	5810	5860	7872	7872					-0.18323037018649302
EDQEMCYEF	9	Unmodified	_EDQEMCYEF_					0	0	0		SPINK5|p.H31Y|1|0.22|ENSG00000133710|chr5:148070332-148070332|C/T|missense_variant	SPINK5|p.H31Y|1|0.22|ENSG00000133710|chr5:148070332-148070332|C/T|missense_variant	SPINK5|p.H31Y|1|0.22|ENSG00000133710|chr5:148070332-148070332|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	597.2085571289062	2	597.209914	1192.40528	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.39	1	90.122	89.622	90.622	0.7318								0	0	0	0.15486	1	34017	34017		7.9102	2.1497	1				8100	29235	5810	5860	7873	7873					-0.18323037018649302
EDQEYEEEEE	10	Unmodified	_EDQEYEEEEE_					0	0	0			REV__ENSG00000083896|ENST00000344157|YTHDC1	REV__ENSG00000083896|ENST00000344157|YTHDC1	MULTI-SECPEP	A375_MHC_IP_R2	2	664.9699096679688	2	664.736059	1327.45757	-0.75396	-0.00050118	0.50725	0.00033719	-0.2467	-0.00016399	664.7375358624495	118.69	0.40485	119.29	119.15	119.56	0.60909					9	7	2	0	0	0	0.94598	1	45052	45052		3.2813	0.28607	1	18105000	+		8101	16816	5811	5861	7874	7874					-0.19306503870279812
EDQGNAAVDY	10	Unmodified	_EDQGNAAVDY_					0	0	0			REV__ENSG00000176746|ENST00000379034|MAGEB6	REV__ENSG00000176746|ENST00000379034|MAGEB6	MULTI-MSMS	A375_MHC_IP_R2	2	541.1421508789062	2	541.225268	1080.43598	-0.89431	-0.00048402	-0.91824	-0.00049697	-1.8126	-0.000981	541.2246936132635	72.769	1.0175	73.505	73.175	74.192	0.73541					31	19	2	0	0	0	0.70651	1	27832	27832		9.3831	2.0939	1	4104500	+		8102	21415	5812	5862	7875	7875					-0.10101799317703808
EDQHLKKLRDF	11	Unmodified	_EDQHLKKLRDF_					0	0	0			REV__ENSG00000125354|ENST00000394610|SEPTIN6	REV__ENSG00000125354|ENST00000394610|SEPTIN6	MSMS	A375_MHC_IP_R2	2	715.2392578125	2	714.883333	1427.75211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.871	1	54.622	54.122	55.122	0.75105								0	0	0	0.16249	1	20338	20338		5.7319	0.83484	1		+		8103	18336	5813	5863	7876	7876					0.05534618920592038
EDQIAELKKI	10	Unmodified	_EDQIAELKKI_					0	0	0		ENSG00000154240|ENST00000535342|CEP112	ENSG00000154240|ENST00000535342|CEP112	ENSG00000154240|ENST00000535342|CEP112	MULTI-SECPEP	A375_MHC_IP_R1	1	594.23779296875	2	593.837528	1185.6605	-0.28396	-0.00016862	0.28298	0.00016805	-0.00097472	-5.7882E-07	593.837792470651	38.602	0.30569	38.602	38.475	38.78	0					12	5	3	0	0	0	0.27758	1	13143	13143		53.404	0.087286	1	4686000			8104	6074	5814	5864	7877	7877					0.07509935503435372
EDQKIYIY	8	Unmodified	_EDQKIYIY_					0	0	0		ENSG00000154237|ENST00000388948|LRRK1;ENST00000525395.2_1_15:101598200-101605355:+|nuORF	ENSG00000154237|ENST00000388948|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	MULTI-MSMS	A375_MHC_IP_R1	1	536.7100830078125	2	536.27149	1070.52843	-0.87887	-0.00047131	-0.52426	-0.00028115	-1.4031	-0.00075246	536.2713898747007	66.215	1.0666	66.215	65.411	66.478	0					36	20	3	0	0	0	0.77488	1	23837	23837		13.508	1.8676	1	4755900			8105	6073	5815	5865	7878	7878					-0.004016695135305781
EDQLAWDWG	9	Unmodified	_EDQLAWDWG_					0	0	0		nc|ENSG00000178226|Q5K4E3-2|PRSS36;nc|ENSG00000178226|Q5K4E3-3|PRSS36;ENSG00000178226|ENST00000268281|PRSS36;ENST00000563693.1_1_16:31153020-31154169:-|nuORF	nc|ENSG00000178226|Q5K4E3-2|PRSS36	nc|ENSG00000178226|Q5K4E3-2|PRSS36	MULTI-SECPEP	A375_MHC_IP_R2	2	560.6658325195312	2	560.240721	1118.46689	-0.60486	-0.00033887	1.4782	0.00082815	0.87335	0.00048929	560.2416536329057	42.006	1.376	42.78	42.35	43.726	0.77451					41	26	3	0	0	0	0.58271	1	15720	15720		20.454	0	1	3711700			8106	8146	5816	5866	7879	7879					-0.08760601212816255
EDQLFPFQL	9	Unmodified	_EDQLFPFQL_					0	0	0			REV__nc|ENSG00000173786|P09543-2|CNP	REV__nc|ENSG00000173786|P09543-2|CNP	MSMS	A375_MHC_IP_R2	2	379.447509765625	3	379.525602	1135.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.3	1	26.96	26.46	27.46	0.65992								0	0	0	0.15486	1	8875	8875		5.2969	2.3016	1		+		8107	21248	5817	5867	7880	7880					-0.0073798062219339045
EDQLLHLE	8	Unmodified	_EDQLLHLE_					0	0	0			REV__ENST00000483067.1_1_2:231036821-231036917:-|nuORF	REV__ENST00000483067.1_1_2:231036821-231036917:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	996.3932495117188	1	996.499652	995.492375	0.048036	4.7868E-05	1.7878	0.0017815	1.8358	0.0018294	996.5005056638583	105.33	1.2197	106.1	105.26	106.48	0.76308					29	23	2	0	0	0	0.75389	1	39707	39707		19.257	1.1106	1	2146300	+		8108	25194	5818	5868	7881	7881					-0.005551266903921714
EDQLLHLE	8	Unmodified	_EDQLLHLE_					0	0	0			REV__ENST00000483067.1_1_2:231036821-231036917:-|nuORF	REV__ENST00000483067.1_1_2:231036821-231036917:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	996.499652	995.492375	0.36279	0.00036152	4.2954	0.0042804	4.6582	0.0046419	996.5038555743392	106.09	0.717	106.09	105.76	106.47	0	-0.0054769	0.00023387	NaN	19.257	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2922600	+		8109	25194	5818	5868							-0.005551266903921714
EDQLLHLE	8	Unmodified	_EDQLLHLE_					0	0	0			REV__ENST00000483067.1_1_2:231036821-231036917:-|nuORF	REV__ENST00000483067.1_1_2:231036821-231036917:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	996.499652	995.492375	0.048036	4.7868E-05	1.7878	0.0017815	1.8358	0.0018294	996.5005056638583	105.33	1.2197	106.1	105.26	106.48	0.76308	0.0054769	-0.002265	NaN	19.257	29	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2146300	+		8110	25194	5818	5868							-0.005551266903921714
EDQQAKGEQY	10	Unmodified	_EDQQAKGEQY_					0	0	0		nc|ENSG00000166928|Q96JA4-2|MS4A14;ENSG00000166928|ENST00000300187|MS4A14;nc|ENSG00000166928|Q96JA4-5|MS4A14	nc|ENSG00000166928|Q96JA4-2|MS4A14	nc|ENSG00000166928|Q96JA4-2|MS4A14	MSMS	A375_MHC_IP_R2	2	598.2720336914062	2	598.264924	1194.5153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.782	1	85.518	85.018	86.018	0.73601								0	0	0	0.15332	1	32230	32230		10.074	2.7847	1				8111	7134	5819	5869	7882	7882					-0.07418152363561603
EDQTKHEFL	9	Unmodified	_EDQTKHEFL_					0	0	0		nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000106278|P23471-3|PTPRZ1;PTPRZ1|p.N1301Tfs*23|1|0.25|ENSG00000106278|chr7:122012947-122012947|A/-|frameshift_variant	nc|ENSG00000106278|P23471-2|PTPRZ1	nc|ENSG00000106278|P23471-2|PTPRZ1	MULTI-MSMS	A375_MHC_IP_R2	2	574.72119140625	2	573.774928	1145.5353	-0.14192	-8.1432E-05	-1.11	-0.0006369	-1.2519	-0.00071833	573.7743599134781	87.649	0.50442	88.381	88.066	88.57	0.7318					18	9	3	0	0	0	0.5339	1	33324	33324		18.135	6.4947	1	2360800			8112	2679	5820	5870	7883	7883					-0.03164356632964882
EDQYIFCYQ	9	Unmodified	_EDQYIFCYQ_					0	0	0		nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MSMS	A375_MHC_IP_R1	1	605.8055419921875	2	604.750064	1207.48558	-0.37906	-0.00022924	3.1998	0.0019351	2.8208	0.0017059	604.7528902791389	59.165	0.81446	59.165	58.531	59.346	0					32	15	4	0	0	0	0.55818	1	21213	21213		16.942	2.104	1	5981700			8113	6695	5821	5871	7884	7884					-0.10986807633253193
EDRDQWPFV	9	Unmodified	_EDRDQWPFV_					0	0	0			REV__ENST00000489593.1_1_9:134321978-134323403:+|nuORF	REV__ENST00000489593.1_1_9:134321978-134323403:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	397.61187744140625	3	397.852489	1190.53564	-0.17026	-6.7737E-05	-0.47566	-0.00018924	-0.64591	-0.00025698	397.8523941965203	32.96	0.15326	33.696	33.62	33.773	0.73692					4	2	2	0	0	0	0.78351	1	11801	11801		5.2969	0	1	1341400	+		8114	25373	5822	5872	7885	7885					-0.052009369131155836
EDREVKKL	8	Unmodified	_EDREVKKL_					0	0	0		ENSG00000101265|ENST00000379400|RASSF2	ENSG00000101265|ENST00000379400|RASSF2	ENSG00000101265|ENST00000379400|RASSF2	MULTI-SECPEP	A375_MHC_IP_R2	2	1015.9666137695312	1	1016.57349	1015.56621	-0.034729	-3.5304E-05	-2.1607	-0.0021965	-2.1955	-0.0022318	1017.5727159420551	107.34	1.6787	108.1	106.93	108.61	0.75436					39	32	2	0	0	0	0.97144	1	40177	40177		9.3474	0	1	4211400			8115	2275	5823	5873	7886	7886					0.059048414719427456
EDREVTLNDH	10	Unmodified	_EDREVTLNDH_					0	0	0			REV__nc|ENSG00000101871|O15344-2|MID1	REV__nc|ENSG00000101871|O15344-2|MID1	MULTI-MSMS	A375_MHC_IP_R1	1	615.1874389648438	2	614.283648	1226.55274	-0.074843	-4.5975E-05	3.6415	0.0022369	3.5666	0.0021909	614.7879063774712	22.887	0.55417	22.887	22.52	23.074	0					22	10	4	0	0	0	0.70651	1	6229	6229		9.3831	0	1	3471800	+		8116	17188	5824	5874	7887	7887					-0.05147061097932237
EDRFFDATCV	10	Unmodified	_EDRFFDATCV_					0	0	0			REV__ENSG00000015413|ENST00000690203|DPEP1	REV__ENSG00000015413|ENST00000690203|DPEP1	MULTI-MSMS	A375_MHC_IP_R1	1	602.1610107421875	2	601.760963	1201.50737	-0.3768	-0.00022674	-0.12281	-7.3904E-05	-0.49961	-0.00030065	601.7610908970086	60.532	0.96669	60.532	60.057	61.024	0					35	18	3	0	0	0	0.6502	1	21753	21753		17.113	2.2746	1	1825400	+		8117	16245	5825	5875	7888	7888					-0.08532002884703616
EDRFFDATCV	10	Unmodified	_EDRFFDATCV_					0	0	0			REV__ENSG00000015413|ENST00000690203|DPEP1	REV__ENSG00000015413|ENST00000690203|DPEP1	MULTI-MSMS	A375_MHC_IP_R1	1	602.2175903320312	2	601.760963	1201.50737	-0.19264	-0.00011592	0.55533	0.00033417	0.36269	0.00021825	601.7622834380226	82.463	0.30583	82.463	82.265	82.571	0					6	5	2	0	0	0	0.70329	1	30122	30122		10.824	3.5347	1	817060	+		8118	16245	5825	5875	7889	7889					-0.08532002884703616
EDRFFDATCV	10	Unmodified	_EDRFFDATCV_					0	0	0			REV__ENSG00000015413|ENST00000690203|DPEP1	REV__ENSG00000015413|ENST00000690203|DPEP1	MULTI-SECPEP	A375_MHC_IP_R2	2	602.1605224609375	2	601.760963	1201.50737	-0.85316	-0.0005134	-0.51085	-0.00030741	-1.364	-0.00082081	601.7609324760189	59.712	0.757	60.459	60.098	60.855	0.74714					25	14	2	0	0	0	0.88918	1	22636	22636		18.146	3.3081	1	2330000	+		8119	16245	5825	5875	7890	7890					-0.08532002884703616
EDRFFDATCV	10	Unmodified	_EDRFFDATCV_					0	0	0			REV__ENSG00000015413|ENST00000690203|DPEP1	REV__ENSG00000015413|ENST00000690203|DPEP1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	601.760963	1201.50737	-0.3768	-0.00022674	-0.12281	-7.3904E-05	-0.49961	-0.00030065	601.7610908970086	60.532	0.96669	60.532	60.057	61.024	0	0.036288	0.00029525	NaN	17.113	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1825400	+		8120	16245	5825	5875							-0.08532002884703616
EDRFLICM	8	Unmodified	_EDRFLICM_					0	0	0		nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1	MULTI-MSMS	A375_MHC_IP_R1	1	1026.473876953125	1	1026.4747	1025.46742	0.40827	0.00041908	1.8964	0.0019466	2.3047	0.0023657	1026.4772118509288	111.7	0.9167	111.7	111.52	112.43	0					21	17	2	0	0	0	0.77488	1	40947	40947		13.508	3.434	1	2127300			8121	2352;6011	5826	5876	7891	7891					-0.04429221088958002
EDRFYKYFYKK	11	Unmodified	_EDRFYKYFYKK_					0	0	0			REV__ENSG00000174885|ENST00000534750|NLRP6	REV__ENSG00000174885|ENST00000534750|NLRP6	MSMS	A375_MHC_IP_R2	2	793.9055786132812	2	793.903734	1585.79291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.31	1	124.64	124.14	125.14	0.32969								0	0	0	0.16307	1	48031	48031		2.7352	0	1		+		8122	21310	5827	5877	7892	7892					0.02344960240202454
EDRGFQGRHY	10	Unmodified	_EDRGFQGRHY_					0	0	0		ENSG00000118231|ENST00000264376|CRYGD	ENSG00000118231|ENST00000264376|CRYGD	ENSG00000118231|ENST00000264376|CRYGD	MULTI-MSMS	A375_MHC_IP_R2	2	633.6504516601562	2	632.794518	1263.57448	-1.1097	-0.00070223	1.019	0.00064483	-0.090701	-5.7395E-05	632.7950852677372	58.36	0.50945	59.109	58.879	59.389	0.74894					20	9	3	0	0	0	0.71118	1	22151	22151		7.2892	0	1	4403900			8123	3532	5828	5878	7893	7893					-0.04676211558717114
EDRIFQKLN	9	Unmodified	_EDRIFQKLN_					0	0	0		nc|ENSG00000289721|W6CW81|PYDC5	nc|ENSG00000289721|W6CW81|PYDC5	nc|ENSG00000289721|W6CW81|PYDC5	MULTI-SECPEP	A375_MHC_IP_R2	2	582.214111328125	2	581.814387	1161.61422	-0.39829	-0.00023173	0.50139	0.00029172	0.1031	5.9985E-05	581.8144853096628	39.515	0.60931	40.289	40.067	40.676	0.77451					22	11	4	0	0	0	0.20451	1	14605	14605		57.722	13.95	1	5692400			8124	14951	5829	5879	7894	7894					0.0398791539200829
EDRIFQKLNY	10	Unmodified	_EDRIFQKLNY_					0	0	0		nc|ENSG00000289721|W6CW81|PYDC5	nc|ENSG00000289721|W6CW81|PYDC5	nc|ENSG00000289721|W6CW81|PYDC5	MULTI-MSMS	A375_MHC_IP_R1	1	442.9665222167969	3	442.56646	1324.67755	0.4079	0.00018052	-0.65633	-0.00029047	-0.24843	-0.00010994	442.5662213537083	49.235	0.40553	49.235	49.033	49.439	0					15	7	3	0	0	0	0.70682	1	17426	17426		9.2438	0.49199	1	2051600			8125	14951	5830	5880	7895	7895					0.028198561092494856
EDRIFQKLNY	10	Unmodified	_EDRIFQKLNY_					0	0	0		nc|ENSG00000289721|W6CW81|PYDC5	nc|ENSG00000289721|W6CW81|PYDC5	nc|ENSG00000289721|W6CW81|PYDC5	MULTI-MSMS	A375_MHC_IP_R2	2	442.9664001464844	3	442.56646	1324.67755	-0.35722	-0.0001581	-0.096545	-4.2727E-05	-0.45377	-0.00020082	442.56642136902485	48.436	0.45457	49.194	49.03	49.485	0.75737					21	8	3	0	0	0	0.62306	1	18224	18224		19.144	2.0954	1	3291900			8126	14951	5830	5880	7896	7896					0.028198561092494856
EDRIFQKLNY	10	Unmodified	_EDRIFQKLNY_					0	0	0		nc|ENSG00000289721|W6CW81|PYDC5	nc|ENSG00000289721|W6CW81|PYDC5	nc|ENSG00000289721|W6CW81|PYDC5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	442.56646	1324.67755	0.4079	0.00018052	-0.65633	-0.00029047	-0.24843	-0.00010994	442.5662213537083	49.235	0.40553	49.235	49.033	49.439	0	0.020509	-0.00048855	NaN	19.144	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2051600			8127	14951	5830	5880							0.028198561092494856
EDRKEKRRKKR	11	Unmodified	_EDRKEKRRKKR_					0	0	0		ENSG00000188760|ENST00000373883|TMEM198	ENSG00000188760|ENST00000373883|TMEM198	ENSG00000188760|ENST00000373883|TMEM198	MSMS	A375_MHC_IP_R1	1	764.92236328125	2	764.960772	1527.90699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.42	1	115.42	114.92	115.92	0								0	0	0	0.16354	1	42329	42329		0.30703	0	1				8128	8930	5831	5881	7897	7897					0.1641528784566617
EDRKKKRRKKR	11	Unmodified	_EDRKKKRRKKR_					0	0	0		TMEM198|p.E270K|1|0.08|ENSG00000188760|chr2:219549217-219549217|G/A|missense_variant	TMEM198|p.E270K|1|0.08|ENSG00000188760|chr2:219549217-219549217|G/A|missense_variant	TMEM198|p.E270K|1|0.08|ENSG00000188760|chr2:219549217-219549217|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	509.9590759277344	3	509.99373	1526.95936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.99	1	23.62	23.12	24.12	0.63014								0	0	0	0.16358	1	7341	7341		0.08335	0	1				8129	29361	5832	5882	7898	7898					0.21695870979283427
EDRKKREREKK	11	Unmodified	_EDRKKREREKK_					0	0	0			REV__ENSG00000158417|ENST00000289371|EIF5B	REV__ENSG00000158417|ENST00000289371|EIF5B	MULTI-MSMS	A375_MHC_IP_R2	2	501.65576171875	3	501.290101	1500.84847	-0.46319	-0.00023219	3.0841	0.001546	2.6209	0.0013138	501.29220127447803	44.14	0.20217	44.909	44.782	44.985	0.7691					5	3	2	0	0	0	0.73698	1	16470	16470		2.2527	0.92309	1	902470	+		8130	20073	5833	5883	7899	7899					0.1180818648051627
EDRLLWCL	8	Unmodified	_EDRLLWCL_					0	0	0			REV__nc|ENSG00000149639|O94964-4|MTCL2	REV__nc|ENSG00000149639|O94964-4|MTCL2	MSMS	A375_MHC_IP_R1	1	524.2028198242188	2	524.268227	1046.5219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.74	1	48.74	48.24	49.24	0								0	0	0	0.16876	1	17209	17209		13.508	0.97634	1		+		8131	19694	5834	5884	7900	7900					0.0005011405410186853
EDRRWPLFWQN	11	Unmodified	_EDRRWPLFWQN_					0	0	0		ENST00000522884.5_1_5:156811334-156816436:+|nuORF	ENST00000522884.5_1_5:156811334-156816436:+|nuORF	ENST00000522884.5_1_5:156811334-156816436:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	773.1206665039062	2	773.881124	1545.7477	-0.90145	-0.00069762	3.3914	0.0026246	2.49	0.001927	774.3855499153473	101.95	0.30505	102.72	102.51	102.82	0.76428					10	5	3	0	0	0	0.99921	1	38627	38627		1.3295	1.0937	1	1455100			8132	13032	5835	5885	7901	7901					-0.0033484550228877197
EDRTRVVS	8	Unmodified	_EDRTRVVS_					0	0	0		nc|ENSG00000143641|Q10471-2|GALNT2;ENSG00000143641|ENST00000366672|GALNT2	nc|ENSG00000143641|Q10471-2|GALNT2	nc|ENSG00000143641|Q10471-2|GALNT2	MULTI-SECPEP	A375_MHC_IP_R2	2	480.4718017578125	2	481.256705	960.498858	-0.60345	-0.00029041	1.9787	0.00095225	1.3752	0.00066184	481.25737773272084	31.123	0.71436	31.842	31.517	32.231	0.71857					19	13	3	0	0	0	0.972	1	11113	11113		0.6015	0	1	2505100			8133	5420	5836	5886	7902	7902					0.01702811261009174
EDSDDECD	8	Unmodified	_EDSDDECD_					0	0	0			REV__LRP4|p.R108Pfs*4|1|0.39|ENSG00000134569|chr11:46899970-46899971|-/G|frameshift_variant	REV__LRP4|p.R108Pfs*4|1|0.39|ENSG00000134569|chr11:46899970-46899971|-/G|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	926.826171875	1	927.252012	926.244736	0.20676	0.00019172	-1.0878	-0.0010087	-0.88103	-0.00081694	927.2516948750698	112.25	1.1733	112.25	111.31	112.48	0					30	22	2	0	0	0	0.972	1	41140	41140		5.7604	0	1	6141300	+		8134	18788	5837	5887	7903	7903					-0.22133668411163399
EDSFLKSSF	9	Unmodified	_EDSFLKSSF_					0	0	0		ENSG00000178764|ENST00000314393|ZHX2;ZHX2|p.P554S|1|0.21|ENSG00000178764|chr8:122953170-122953170|C/T|missense_variant	ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	MULTI-MSMS	A375_MHC_IP_R1	1	530.6529541015625	2	530.253297	1058.49204	-0.61271	-0.00032489	-1.3613	-0.00072185	-1.974	-0.0010467	530.2530721951996	61.05	0.50859	61.05	60.77	61.279	0					16	9	2	0	0	0	0.34064	1	22035	22035		27.629	4.8925	1	2186600			8135	8176	5838	5888	7904	7904					-0.03486546410226765
EDSFPLSFVA	10	Unmodified	_EDSFPLSFVA_					0	0	0			REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	MULTI-MSMS	A375_MHC_IP_R2	2	556.6693115234375	2	556.268947	1110.52334	-0.69565	-0.00038697	-0.097252	-5.4098E-05	-0.7929	-0.00044107	556.2688315448734	92.542	0.85951	93.281	92.937	93.797	0.73902					36	16	3	0	0	0	0.079406	2	35162	35162;35263		68.081	26	1	6960700	+		8136	20096	5839	5889	7905;7906	7905					-0.02749973376126036
EDSFPLSFVA	10	Unmodified	_EDSFPLSFVA_					0	0	0			REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	MULTI-SECPEP	A375_MHC_IP_R2	2	556.6693115234375	2	556.268947	1110.52334	-0.69565	-0.00038697	-0.097252	-5.4098E-05	-0.7929	-0.00044107	556.2688315448734	92.542	0.85951	93.281	92.937	93.797	0.73902					36	16	3	0	0	0	0.19481	1	35162	35162		68.081	20.332	1	6960700	+		8137	20096	5839	5889	7907	7907					-0.02749973376126036
EDSFVCQCF	9	Unmodified	_EDSFVCQCF_					0	0	0		nc|ENSG00000132561|O00339-4|MATN2;nc|ENSG00000132561|O00339-3|MATN2;nc|ENSG00000132561|O00339-2|MATN2;ENSG00000132561|ENST00000254898|MATN2	nc|ENSG00000132561|O00339-4|MATN2	nc|ENSG00000132561|O00339-4|MATN2	MSMS	A375_MHC_IP_R2	2	539.171142578125	2	539.204435	1076.39432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.027	1	82.77	82.27	83.27	0.74293								0	0	0	0.15486	1	31158	31158		7.9102	0	1				8138	4422	5840	5890	7908	7908					-0.14082394602246495
EDSFYNNSY	9	Unmodified	_EDSFYNNSY_					0	0	0		ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1;EHBP1|p.C479Lfs*8|1|0.21|ENSG00000115504|chr2:62942857-62942858|-/T|frameshift_variant	ENSG00000115504|ENST00000431489|EHBP1	ENSG00000115504|ENST00000431489|EHBP1	MSMS	A375_MHC_IP_R1	1	569.6890869140625	2	569.719818	1137.42508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.623	1	72.623	72.123	73.123	0								0	0	0	0.15486	1	26425	26425		11.64	5.8799	1				8139	3314	5841	5891	7909	7909					-0.13813201691982613
EDSGDKCDCY	10	Unmodified	_EDSGDKCDCY_					0	0	0			REV__PRKCSH|p.D54Y|1|0.25|ENSG00000130175|chr19:11436469-11436469|G/T|missense_variant	REV__PRKCSH|p.D54Y|1|0.25|ENSG00000130175|chr19:11436469-11436469|G/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	568.0895385742188	2	567.689346	1133.36414	-0.38745	-0.00021995	0.48583	0.0002758	0.098376	5.5847E-05	567.6896035916734	67.227	0.71173	67.963	67.648	68.359	0.73631					18	13	2	0	0	0	0.70793	1	25569	25569		8.7454	4.4162	1	1626800	+		8140	18521	5842	5892	7910	7910					-0.19720798058074251
EDSGYYLCK	9	Unmodified	_EDSGYYLCK_					0	0	0		nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.M1658Sfs*11|1|0.32|ENSG00000171587|chr21:40055787-40055787|A/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM	nc|ENSG00000171587|O60469-2|DSCAM	nc|ENSG00000171587|O60469-2|DSCAM	MULTI-MSMS	A375_MHC_IP_R1	1	539.1716918945312	2	539.231507	1076.44846	-0.54608	-0.00029446	-2.1389	-0.0011534	-2.685	-0.0014478	539.2307192033861	82.545	0.60551	82.545	82.469	83.075	0					12	11	2	0	0	0	0.55818	1	30307	30307		16.942	0	1	922020			8141	805	5843	5893	7911	7911					-0.0867047917902255
EDSHDGCDDE	10	Unmodified	_EDSHDGCDDE_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MSMS	A375_MHC_IP_R2	2	561.1163330078125	2	561.169832	1120.32511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.905	1	82.648	82.148	83.148	0.74293								0	0	0	0.15628	1	31113	31113		0.45834	0	1		+		8142	18241	5844	5894	7912	7912					-0.23023807088111425
EDSIYDSRF	9	Unmodified	_EDSIYDSRF_					0	0	0			REV__ENSG00000164303|ENST00000296741|ENPP6	REV__ENSG00000164303|ENST00000296741|ENPP6	MSMS	A375_MHC_IP_R2	2	566.2283935546875	2	566.251286	1130.48802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.07	1	53.821	53.321	54.321	0.75105								0	0	0	0.15486	1	20021	20021		7.9102	0	1		+		8143	20478	5845	5895	7913	7913					-0.0720063590395057
EDSLPIAKEA	10	Unmodified	_EDSLPIAKEA_					0	0	0		CUX2|p.L396P|1|0.16|ENSG00000111249|chr12:111308455-111308455|T/C|missense_variant	CUX2|p.L396P|1|0.16|ENSG00000111249|chr12:111308455-111308455|T/C|missense_variant	CUX2|p.L396P|1|0.16|ENSG00000111249|chr12:111308455-111308455|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	357.91357421875	3	358.188878	1071.5448	-0.15564	-5.5748E-05	0.93634	0.00033539	0.7807	0.00027964	358.18917053150875	39.824	0.61055	39.824	39.592	40.203	0					25	11	4	0	0	0	0.83355	1	13593	13593		14.957	5.4132	1	2808000			8144	686	5846	5896	7914	7914					0.011894116525809295
EDSPQENVSV	10	Unmodified	_EDSPQENVSV_					0	0	0		ENSG00000168724|ENST00000648817|DNAJC21;nc|ENSG00000168724|Q5F1R6-3|DNAJC21;nc|ENSG00000168724|Q5F1R6-2|DNAJC21;ENST00000512136.1_1_5:34950367-34950549:+|nuORF;ENST00000506762.1_1_5:34950367-34954151:+|nuORF	ENSG00000168724|ENST00000648817|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	MULTI-MSMS	A375_MHC_IP_R1	1	552.6470336914062	2	552.2462	1102.47785	-0.38149	-0.00021068	0.70993	0.00039206	0.32844	0.00018138	552.2467040843488	82.502	0.45775	82.502	82.265	82.722	0					17	8	3	0	0	0	0.38709	1	30159	30159		34.932	13.185	1	2203300			8145	7337	5847	5897	7915	7915					-0.06929243629178927
EDSPQENVSV	10	Unmodified	_EDSPQENVSV_					0	0	0		ENSG00000168724|ENST00000648817|DNAJC21;nc|ENSG00000168724|Q5F1R6-3|DNAJC21;nc|ENSG00000168724|Q5F1R6-2|DNAJC21;ENST00000512136.1_1_5:34950367-34950549:+|nuORF;ENST00000506762.1_1_5:34950367-34954151:+|nuORF	ENSG00000168724|ENST00000648817|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	MULTI-SECPEP	A375_MHC_IP_R2	2	552.646240234375	2	552.2462	1102.47785	-0.84308	-0.00046559	0.46254	0.00025544	-0.38054	-0.00021015	552.2464569438712	81.809	0.45704	82.552	82.33	82.787	0.74294					12	8	2	0	0	0	0.56504	1	31122	31122		34.402	13.948	1	2285800			8146	7337	5847	5897	7916	7916					-0.06929243629178927
EDSPSCPSL	9	Unmodified	_EDSPSCPSL_					0	0	0		ENSG00000070985|ENST00000696290|TRPM5;nc|ENSG00000070985|Q9NZQ8-2|TRPM5	ENSG00000070985|ENST00000696290|TRPM5	ENSG00000070985|ENST00000696290|TRPM5	MULTI-MSMS	A375_MHC_IP_R2	2	468.0947570800781	2	467.694758	933.374962	-0.95046	-0.00044452	1.7406	0.00081407	0.79014	0.00036955	467.6951331848535	61.401	0.50382	62.146	61.919	62.423	0.74503					14	9	2	0	0	0	0.5339	1	23306	23306		18.135	0	1	1555700			8147	1506	5848	5898	7917	7917					-0.09439027621499463
EDSRIPYDDY	10	Unmodified	_EDSRIPYDDY_					0	0	0		nc|ENSG00000120509|Q5EBL8-2|PDZD11	nc|ENSG00000120509|Q5EBL8-2|PDZD11	nc|ENSG00000120509|Q5EBL8-2|PDZD11	MULTI-MSMS	A375_MHC_IP_R1	1	636.699951171875	2	636.772582	1271.53061	-0.65606	-0.00041776	-0.075265	-4.7927E-05	-0.73132	-0.00046569	636.77240978611	47.447	0.66009	47.447	47.159	47.819	0					28	12	3	0	0	0	0.70496	1	16822	16822		10.074	0.6908	1	5808800			8148	14567	5849	5899	7918	7918					-0.09429285566375256
EDSRLVQPF	9	Unmodified	_EDSRLVQPF_					0	0	0		nc|ENSG00000164393|Q8IZF7-2|ADGRF2P;nc|ENSG00000164393|Q8IZF7|ADGRF2P	nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	MULTI-MSMS	A375_MHC_IP_R1	1	364.0779724121094	3	364.189101	1089.54547	0.011687	4.2562E-06	-0.51802	-0.00018866	-0.50633	-0.0001844	364.1887456581914	19.244	0.3501	19.244	19.221	19.571	0					21	8	3	0	0	0	0.66474	1	4809	4809		10.151	0.76745	1	167940000			8149	14729	5850	5900	7919	7919					0.0042825109228488145
EDSYFARGLVY	11	Unmodified	_EDSYFARGLVY_					0	0	0		ENST00000556300.6_1_14:74417008-74425067:+|nuORF	ENST00000556300.6_1_14:74417008-74425067:+|nuORF	ENST00000556300.6_1_14:74417008-74425067:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	659.7640991210938	2	660.31696	1318.61937	-0.81292	-0.00053679	1.4459	0.00095472	0.63293	0.00041793	661.3226706574771	92.442	0.35346	93.181	92.937	93.291	0.73902					11	6	3	0	0	0	0.99227	1	35145	35145		9.3831	0.63772	1	1004100			8150	13439	5851	5901	7920	7920					-0.027198255360644907
EDTDRYRI	8	Unmodified	_EDTDRYRI_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1431274414062	2	534.259445	1066.50434	-0.65659	-0.00035079	3.498	0.0018689	2.8414	0.0015181	535.2653724571986	43.34	0.60701	44.113	43.876	44.483	0.7724					27	11	4	0	0	0	0.95423	1	16184	16184		7.9102	0	1	3271000			8151	9009	5852	5902	7921	7921					-0.026255099471882204
EDTDSDDDDES	11	Unmodified	_EDTDSDDDDES_					0	0	0			REV__nc|ENSG00000175727|Q9HAP2-3|MLXIP	REV__nc|ENSG00000175727|Q9HAP2-3|MLXIP	MSMS	A375_MHC_IP_R2	2	621.6937866210938	2	621.691849	1241.36914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.215	1	20.826	20.326	21.326	0.61029								0	0	0	0.16334	1	6274	6274		1.3295	0	1		+		8152	21362	5853	5903	7922	7922					-0.24188544180765348
EDTEELHLLIE	11	Unmodified	_EDTEELHLLIE_					0	0	0			REV__ENSG00000146350|ENST00000398212|TBC1D32	REV__ENSG00000146350|ENST00000398212|TBC1D32	MULTI-SECPEP	A375_MHC_IP_R1	1	671.2317504882812	2	670.83264	1339.65073	-0.58956	-0.00039549	0.68581	0.00046006	0.096256	6.4572E-05	670.8327638119541	55.508	0.40779	55.508	55.279	55.687	0					12	7	2	0	0	0	0.99227	1	19865	19865		2.9952	0	1	2344400	+		8153	19528	5854	5904	7923	7923					-0.005512972925998838
EDTELLGSEEY	11	Unmodified	_EDTELLGSEEY_					0	0	0			REV__ENST00000495756.5_1_3:112255248-112280627:-|nuORF;REV__ENSG00000144848|ENST00000283290|ATG3	REV__ENSG00000144848|ENST00000283290|ATG3	MSMS	A375_MHC_IP_R1	1	642.8132934570312	2	642.77753	1283.54051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.044	1	68.044	67.544	68.544	0								0	0	0	0.16179	1	24663	24663		9.3831	3.1773	1		+		8154	25450;19451	5855	5905	7924	7924					-0.08992142351644361
EDTFYRYFYKK	11	Unmodified	_EDTFYRYFYKK_					0	0	0			REV__NLRP1|p.E488K|2|0.22|ENSG00000091592|chr17:5559234-5559234|C/T|missense_variant	REV__NLRP1|p.E488K|2|0.22|ENSG00000091592|chr17:5559234-5559234|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	780.3770751953125	2	780.380091	1558.74563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.203	1	81.203	80.703	81.703	0								0	0	0	0.16297	1	29672	29672		3.2813	0.54611	1		+		8155	27612	5856	5906	7925	7925					-0.011393190307899204
EDTGSSSY	8	Unmodified	_EDTGSSSY_					0	0	0			REV__ENST00000489343.5_1_3:132440828-132441221:+|nuORF	REV__ENST00000489343.5_1_3:132440828-132441221:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	845.46337890625	1	845.315933	844.308657	-0.48961	-0.00041387	-2.8115	-0.0023766	-3.3011	-0.0027905	845.3180018108674	114.15	0.29975	114.86	114.58	114.88	0.70985					9	5	2	0	0	0	0.77624	1	42984	42984		8.5933	3.3626	1	1666400	+		8156	25368	5857	5907	7926	7926					-0.11972520191886815
EDTKTRNWGFY	11	Unmodified	_EDTKTRNWGFY_					0	0	0			REV__ENSG00000134899|ENST00000652225|ERCC5	REV__ENSG00000134899|ENST00000652225|ERCC5	MULTI-SECPEP	A375_MHC_IP_R1	1	708.6544799804688	2	708.830766	1415.64698	-0.71761	-0.00050866	-0.2586	-0.0001833	-0.97621	-0.00069197	709.3324848651949	65.562	0.3566	65.562	65.36	65.717	0					9	6	2	0	0	0	0.95991	1	23724	23724		8.7454	0	1	1327700	+		8157	18809	5858	5908	7927	7927					-0.044219222758329124
EDTLIAGHY	9	Unmodified	_EDTLIAGHY_					0	0	0		tr|U7T2K2|U7T2K2_FUSNUL-aspartateoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00735PE=3SV=1	tr|U7T2K2|U7T2K2_FUSNUL-aspartateoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00735PE=3SV=1	tr|U7T2K2|U7T2K2_FUSNUL-aspartateoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00735PE=3SV=1	MSMS	A375_MHC_IP_R1	1	509.7035827636719	2	509.745639	1017.47673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.992	1	80.992	80.492	81.492	0								0	0	0	0.15131	1	29593	29593		19.439	1.304	1				8158	29937	5859	5909	7928	7928					-0.03131413207427158
EDTLMDRVWLW	11	Unmodified	_EDTLMDRVWLW_					0	0	0			REV__ENSG00000188352|ENST00000338382|FOCAD	REV__ENSG00000188352|ENST00000338382|FOCAD	MSMS	A375_MHC_IP_R2	2	488.4693908691406	3	488.571105	1462.69149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.25	1	57.999	57.499	58.499	0.74894								0	0	0	0.16336	1	21646	21646		1.2148	0.51716	1		+		8159	22088	5860	5910	7929	7929					-0.02135234453976409
EDTLPHRIVV	10	Unmodified	_EDTLPHRIVV_					0	0	0			REV__ENSG00000206190|ENST00000555815|ATP10A	REV__ENSG00000206190|ENST00000555815|ATP10A	MULTI-SECPEP	A375_MHC_IP_R2	2	392.97174072265625	3	393.555784	1177.64552	-0.63059	-0.00024817	-1.2992	-0.00051132	-1.9298	-0.0007595	393.5554069896656	25.807	0.30571	26.467	26.296	26.602	0.65992					6	5	2	0	0	0	0.94587	1	8635	8635		0.13989	0	1	960190	+		8160	22592	5861	5911	7930	7930					0.06380488426066222
EDTPATRYW	9	Unmodified	_EDTPATRYW_					0	0	0		ENST00000317276.8_1_17:8054153-8055707:-|nuORF	ENST00000317276.8_1_17:8054153-8055707:-|nuORF	ENST00000317276.8_1_17:8054153-8055707:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	570.1779174804688	2	569.76182	1137.50909	-0.49273	-0.00028074	0.080171	4.5679E-05	-0.41256	-0.00023506	569.7618073375344	35.82	0.40771	36.583	36.384	36.792	0.76338					15	7	3	0	0	0	0.2002	1	13062	13062		37.974	5.1883	1	2785900			8161	10667	5862	5912	7931	7931					-0.05416625804446085
EDTYQLEIAE	10	Unmodified	_EDTYQLEIAE_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;TTN|p.L14011*|1|0.26|ENSG00000155657|chr2:178618595-178618595|A/-|frameshift_variant;TTN|p.V5956Efs*8|1|0.3|ENSG00000155657|chr2:178729292-178729338|CAGGGCAACTCTAGTACTGCATGAGCAGCTGCCGCCTTCATTGGATA/-|frameshift_variant;TTN|p.F5884Lfs*5|1|0.04|ENSG00000155657|chr2:178729553-178729553|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R2	2	404.9484558105469	3	404.187314	1209.54011	-0.43979	-0.00017776	0.8056	0.00032561	0.36581	0.00014786	404.18789730231083	25.662	0.45675	26.321	26.094	26.551	0.65992					14	8	2	0	0	0	0.94113	1	8674	8674		7.0371	5.4448	1	2137300			8162	6151;14694;14693	5863	5913	7932	7932					-0.056275172808454954
EDVIKMLWRKT	11	Unmodified	_EDVIKMLWRKT_					0	0	0			REV__ENST00000520632.5_1_8:96048695-96056782:+|nuORF	REV__ENST00000520632.5_1_8:96048695-96056782:+|nuORF	MSMS	A375_MHC_IP_R2	2	709.8963012695312	2	709.894854	1417.77516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.95	1	107.71	107.21	108.21	0.75977								0	0	0	0.16232	1	40413	40413		6.6304	1.3335	1		+		8163	19966	5864	5914	7933	7933					0.08297921713688083
EDVIRKYPEQW	11	Unmodified	_EDVIRKYPEQW_					0	0	0		tr|U7SSY8|U7SSY8_FUSNULipidAbiosynthesislauroylacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01421PE=4SV=1	tr|U7SSY8|U7SSY8_FUSNULipidAbiosynthesislauroylacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01421PE=4SV=1	tr|U7SSY8|U7SSY8_FUSNULipidAbiosynthesislauroylacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01421PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	732.2685546875	2	731.869891	1461.72523	-0.88868	-0.0006504	-0.22148	-0.00016209	-1.1102	-0.00081249	731.8692637805792	107.15	0.55788	107.9	107.59	108.15	0.75436					27	10	4	0	0	0	0.99018	1	40456	40456		11.495	0.6952	1	4428000			8164	29654	5865	5915	7934	7934					0.012835103094175793
EDVLCVSY	8	Carbamidomethyl (C)	_EDVLC(Carbamidomethyl (C))VSY_	EDVLC(1)VSY		EDVLC(64)VSY		0	1	0		ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-MSMS	A375_MHC_IP_R1	1	493.12060546875	2	492.720775	983.426998	-0.38191	-0.00018818	0.076291	3.759E-05	-0.30562	-0.00015059	492.7208327515067	58.471	2.1337	58.471	57.618	59.752	0					59	41	2	0	0	0	0.24409	1	21048	21048		63.563	15.217	1	1390900			8165	1371	5866	5916	7935	7935	6				-0.06537864207723487
EDVNADPEV	9	Unmodified	_EDVNADPEV_					0	0	0		ENSG00000182173|ENST00000333213|TSEN54	ENSG00000182173|ENST00000333213|TSEN54	ENSG00000182173|ENST00000333213|TSEN54	MSMS	A375_MHC_IP_R1	1	494.1468200683594	2	494.216911	986.41927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.384	1	64.384	63.884	64.884	0								0	0	0	0.15486	1	23292	23292		11.64	0.81637	1				8166	8382	5867	5917	7936	7936					-0.07448300203668623
EDVNADPEV	9	Unmodified	_EDVNADPEV_					0	0	0		ENSG00000182173|ENST00000333213|TSEN54	ENSG00000182173|ENST00000333213|TSEN54	ENSG00000182173|ENST00000333213|TSEN54	MSMS	A375_MHC_IP_R2	2	494.18536376953125	2	494.216911	986.41927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.719	1	64.46	63.96	64.96	0.74022								0	0	0	0.1499	1	24161	24161		21.747	6.9084	1				8167	8382	5867	5917	7937	7937					-0.07448300203668623
EDVPLLEDI	9	Unmodified	_EDVPLLEDI_					0	0	0		nc|ENSG00000288642|P51861|CDR1	nc|ENSG00000288642|P51861|CDR1	nc|ENSG00000288642|P51861|CDR1	MULTI-MSMS	A375_MHC_IP_R1	1	521.729736328125	2	521.76878	1041.52301	-0.31609	-0.00016493	1.2647	0.00065989	0.94863	0.00049497	521.7694148130554	43.233	0.61056	43.233	42.891	43.502	0					17	11	2	0	0	0	0.6898	1	14924	14924		7.9102	0	1	2627600			8168	14948	5868	5918	7938	7938					0.0039060690398855513
EDVPPRQY	8	Unmodified	_EDVPPRQY_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	MSMS	A375_MHC_IP_R2	2	502.1829528808594	2	502.245806	1002.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.3	1	143.32	142.82	143.82	0.024414								0	0	0	0.16876	1	56006	56006		5.2307	0.47466	1		+		8169	27255	5869	5919	7939	7939					-0.02407993487577187
EDVSLVLGI	9	Unmodified	_EDVSLVLGI_					0	0	0		nc|ENSG00000160703|Q86UT6-2|NLRX1;ENST00000481860.6_1_11:119043673-119051967:+|nuORF;ENSG00000160703|ENST00000409109|NLRX1	nc|ENSG00000160703|Q86UT6-2|NLRX1	nc|ENSG00000160703|Q86UT6-2|NLRX1	MULTI-SECPEP	A375_MHC_IP_R1	1	944.7537841796875	1	944.529889	943.522613	0.14812	0.00013991	-0.10148	-9.5849E-05	0.046645	4.4057E-05	944.5307062636696	105.83	0.66011	105.83	105.5	106.16	0					17	12	2	0	0	0	0.62767	1	38736	38736		23.148	6.2061	1	2352700			8170	14713	5870	5920	7940	7940					0.04859231974796785
EDVTTCKQY	9	Unmodified	_EDVTTCKQY_					0	0	0			REV__nc|ENSG00000184014|Q6IQ26-2|DENND5A	REV__nc|ENSG00000184014|Q6IQ26-2|DENND5A	MSMS	A375_MHC_IP_R1	1	543.6119384765625	2	543.742239	1085.46993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.686	1	60.686	60.186	61.186	0								0	0	0	0.1499	1	21853	21853		21.747	4.8044	1		+		8171	21792	5871	5921	7941	7941					-0.06939094150311576
EDVVREWHHY	10	Unmodified	_EDVVREWHHY_					0	0	0		tr|U7SPC7|U7SPC7_FUSNULargeribosomalsubunitproteinuL13OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplMPE=3SV=1	tr|U7SPC7|U7SPC7_FUSNULargeribosomalsubunitproteinuL13OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplMPE=3SV=1	tr|U7SPC7|U7SPC7_FUSNULargeribosomalsubunitproteinuL13OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplMPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	456.69256591796875	3	457.214309	1368.6211	-0.53665	-0.00024536	-0.20872	-9.543E-05	-0.74537	-0.00034079	457.54815615101444	40.972	0.20394	41.747	41.641	41.845	0.77451					5	3	2	0	0	0	0.94587	1	15180	15180		1.9064	0.31409	1	2236800			8172	29580	5872	5922	7942	7942					-0.048467717274206734
EDWDWDDDDDD	11	Unmodified	_EDWDWDDDDDD_					0	0	0			REV__ENSG00000124784|ENST00000379834|RIOK1	REV__ENSG00000124784|ENST00000379834|RIOK1	MSMS	A375_MHC_IP_R2	2	720.750244140625	2	720.72094	1439.42733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.893	1	69.628	69.128	70.128	0.73511								0	0	0	0.16353	1	26104	26104		0.35063	0	1		+		8173	18323	5873	5923	7943	7943					-0.2748086253550355
EDWDYTYV	8	Unmodified	_EDWDYTYV_					0	0	0		ENSG00000187616|ENST00000339996|MYMK	ENSG00000187616|ENST00000339996|MYMK	ENSG00000187616|ENST00000339996|MYMK	MULTI-SECPEP	A375_MHC_IP_R1	1	545.220947265625	2	545.72183	1089.42911	-0.47873	-0.00026125	-1.8057	-0.00098541	-2.2844	-0.0012467	545.721408087283	97.888	0.30679	97.888	97.743	98.05	0					6	5	2	0	0	0	0.97144	1	36018	36018		9.3474	5.403	1	1316700			8174	8841	5874	5924	7944	7944					-0.1120311219829091
EDWHGRGHI	9	Unmodified	_EDWHGRGHI_					0	0	0			REV__SIM1|p.K601Nfs*41|1|0.2|ENSG00000112246|chr6:100390859-100390859|T/-|frameshift_variant	REV__SIM1|p.K601Nfs*41|1|0.2|ENSG00000112246|chr6:100390859-100390859|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	553.1787109375	2	553.759946	1105.50534	-0.68298	-0.00037821	-0.9528	-0.00052762	-1.6358	-0.00090583	553.7590253283638	93.154	0.35635	93.893	93.696	94.053	0.73901					10	6	2	0	0	0	0.69504	1	35373	35373		12.532	0	1	641800	+		8175	17720	5875	5925	7945	7945					-0.04319250787625606
EDWRRAKAKL	10	Unmodified	_EDWRRAKAKL_					0	0	0			REV__ENSG00000072501|ENST00000322213|SMC1A	REV__ENSG00000072501|ENST00000322213|SMC1A	MULTI-MSMS	A375_MHC_IP_R1	1	1272.8660888671875	1	1272.71713	1271.70985	0.2367	0.00030125	-1.5082	-0.0019195	-1.2715	-0.0016183	1273.7178171480527	107.98	0.30483	107.98	107.75	108.05	0					7	5	2	0	0	0	0.71245	1	39590	39590		6.7232	0	1	3165600	+		8176	16604	5876	5926	7946	7946					0.08486688302878065
EDWRRAKAKL	10	Unmodified	_EDWRRAKAKL_					0	0	0			REV__ENSG00000072501|ENST00000322213|SMC1A	REV__ENSG00000072501|ENST00000322213|SMC1A	MULTI-SECPEP	A375_MHC_IP_R2	2	1272.8701171875	1	1272.71713	1271.70985	0.45291	0.00057643	-0.28887	-0.00036765	0.16405	0.00020878	1272.718510609672	111.48	0.61711	112.22	111.75	112.37	0.73692					14	11	2	0	0	0	0.9269	1	41882	41882		10.824	2.2306	1	4324800	+		8177	16604	5876	5926	7947	7947					0.08486688302878065
EDWRRAKAKL	10	Unmodified	_EDWRRAKAKL_					0	0	0			REV__ENSG00000072501|ENST00000322213|SMC1A	REV__ENSG00000072501|ENST00000322213|SMC1A	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	1272.71713	1271.70985	0.2367	0.00030125	-1.5082	-0.0019195	-1.2715	-0.0016183	1273.7178171480527	107.98	0.30483	107.98	107.75	108.05	0	0	0	NaN	6.7232	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3165600	+		8178	16604	5876	5926							0.08486688302878065
EDWRSSCPD	9	Unmodified	_EDWRSSCPD_					0	0	0			REV__ENSG00000114857|ENST00000232978|NKTR	REV__ENSG00000114857|ENST00000232978|NKTR	MSMS	A375_MHC_IP_R2	2	547.6629638671875	2	547.714013	1093.41347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.402	1	43.175	42.675	43.675	0.7724								0	0	0	0.15486	1	15773	15773		7.9102	0	1		+		8179	17844	5877	5927	7948	7948					-0.12949721986979057
EDWTVEISY	9	Unmodified	_EDWTVEISY_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	A375_MHC_IP_R2	2	381.5735168457031	3	381.173117	1140.49752	-0.30264	-0.00011536	4.1411	0.0015785	3.8385	0.0014631	381.1736480616428	41.114	0.40666	41.889	41.641	42.047	0.77451					21	7	4	0	0	0	0.77003	1	15289	15289		7.609	3.0801	1	3109800	+		8180	16347	5878	5928	7949	7949					-0.06710867618426164
EDWTVEISY	9	Unmodified	_EDWTVEISY_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-MATCH	A375_MHC_IP_R1	1		3	381.173117	1140.49752	0.25474	9.71E-05	3.7981	0.0014477	4.0529	0.0015448	381.5081091916783	41.939	0.5093	41.939	41.674	42.183	0	0.024885	-0.00018206	NaN	7.609	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3364600	+		8181	16347	5878	5928							-0.06710867618426164
EDYFPEFARY	10	Unmodified	_EDYFPEFARY_					0	0	0		nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|P63092-3|GNAS	nc|ENSG00000087460|P63092-3|GNAS	MULTI-SECPEP	A375_MHC_IP_R2	2	669.1956176757812	2	668.79586	1335.57717	-0.84372	-0.00056427	1.0355	0.00069251	0.19174	0.00012824	668.7966617421858	96.467	0.55643	97.223	96.962	97.519	0.75587					21	10	3	0	0	0	0.41513	1	36606	36606		53.404	36.291	1	2347600			8182	1873	5879	5929	7950	7950					-0.07719800944414601
EDYFVPLHHFY	11	Unmodified	_EDYFVPLHHFY_					0	0	0		nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	MULTI-MSMS	A375_MHC_IP_R1	1	489.9625549316406	3	489.562827	1465.66665	-0.21239	-0.00010398	-0.59069	-0.00028918	-0.80308	-0.00039316	489.5625443424631	62.162	0.71749	62.162	61.891	62.609	0					28	13	3	0	0	0	0.7359	1	22461	22461		1.3296	0.11481	1	2397600			8183	8923	5880	5930	7951	7951					-0.04755546265050725
EDYFVPLHHFY	11	Unmodified	_EDYFVPLHHFY_					0	0	0		nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	489.562827	1465.66665	-0.21239	-0.00010398	-0.59069	-0.00028918	-0.80308	-0.00039316	489.5625443424631	62.162	0.71749	62.162	61.891	62.609	0	-0.072289	0.00014803	NaN	1.3296	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2397600			8184	8923	5880	5930							-0.04755546265050725
EDYHPAEL	8	Unmodified	_EDYHPAEL_					0	0	0		ENSG00000161835|ENST00000293662|TAMALIN	ENSG00000161835|ENST00000293662|TAMALIN	ENSG00000161835|ENST00000293662|TAMALIN	MULTI-SECPEP	A375_MHC_IP_R2	2	486.6919860839844	2	487.216714	972.418876	-0.8903	-0.00043377	0.16619	8.0972E-05	-0.72411	-0.0003528	487.216575898212	57.684	0.40758	58.433	58.221	58.629	0.74894					11	7	2	0	0	0	0.84748	1	21817	21817		15.847	7.937	1	1118900			8185	6488	5881	5931	7952	7952					-0.06843675132847693
EDYKRIALSFN	11	Unmodified	_EDYKRIALSFN_					0	0	0			REV__ENSG00000168016|ENST00000645898|TRANK1	REV__ENSG00000168016|ENST00000645898|TRANK1	MULTI-MSMS	A375_MHC_IP_R2	2	678.7511596679688	2	678.351334	1354.68811	-0.82525	-0.00055981	0.0077834	5.2798E-06	-0.81746	-0.00055453	678.3515934148965	49.041	0.35593	49.799	49.588	49.944	0.75737					12	6	2	0	0	0	0.60387	1	18443	18443		28.495	6.9044	1	2548300	+		8186	20819	5882	5932	7953	7953					0.024958387636615953
EDYKRIALSFN	11	Unmodified	_EDYKRIALSFN_					0	0	0			REV__ENSG00000168016|ENST00000645898|TRANK1	REV__ENSG00000168016|ENST00000645898|TRANK1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	678.351334	1354.68811	-0.82525	-0.00055981	0.0077834	5.2798E-06	-0.81746	-0.00055453	678.3515934148965	49.041	0.35593	49.799	49.588	49.944	0.75737	0.027587	-0.00037704	NaN	28.495	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2548300	+		8187	20819	5882	5932							0.024958387636615953
EDYKVPKF	8	Unmodified	_EDYKVPKF_					0	0	0		nc|ENSG00000070495|Q6NYC1-2|JMJD6;ENSG00000070495|ENST00000397625|JMJD6;nc|ENSG00000070495|Q6NYC1-3|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	MULTI-MSMS	A375_MHC_IP_R1	1	1026.5775146484375	1	1025.53022	1024.52295	0.61692	0.00063267	0.21808	0.00022364	0.835	0.00085631	1025.5298424265484	115.08	0.55331	115.08	114.67	115.22	0					15	10	2	0	0	0	0.75322	1	42169	42169		19.439	1.304	1	1931300			8188	14478	5883	5933	7954	7954					0.011666516946661432
EDYKVPKF	8	Unmodified	_EDYKVPKF_					0	0	0		nc|ENSG00000070495|Q6NYC1-2|JMJD6;ENSG00000070495|ENST00000397625|JMJD6;nc|ENSG00000070495|Q6NYC1-3|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	MULTI-MATCH	A375_MHC_IP_R2	2		1	1025.53022	1024.52295	0.23891	0.00024501	-0.96151	-0.00098606	-0.7226	-0.00074105	1025.529034466813	114.28	0.35201	114.99	114.73	115.08	0.70985	-0.041228	-0.00076249	NaN	19.439	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2570300			8189	14478	5883	5933							0.011666516946661432
EDYLRILRYFR	11	Unmodified	_EDYLRILRYFR_					0	0	0		nc|ENSG00000072756|Q96Q11-2|TRNT1;ENSG00000072756|ENST00000251607|TRNT1	nc|ENSG00000072756|Q96Q11-2|TRNT1	nc|ENSG00000072756|Q96Q11-2|TRNT1	MSMS	A375_MHC_IP_R2	2	772.1567993164062	2	772.422625	1542.8307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.31	1	123.69	123.19	124.19	0.3766								0	0	0	0.16269	1	47363	47363		5.7319	4.25	1				8190	1545	5884	5934	7955	7955					0.08099471225682464
EDYLTKILK	9	Unmodified	_EDYLTKILK_					0	0	0		nc|ENSG00000075651|Q13393-2|PLD1;ENSG00000075651|ENST00000351298|PLD1;nc|ENSG00000075651|Q13393-3|PLD1;nc|ENSG00000075651|Q13393-4|PLD1;ENST00000440204.5_1_3:171443806-171453328:-|nuORF;ENST00000475273.6_1_3:171439220-171455712:-|nuORF	nc|ENSG00000075651|Q13393-2|PLD1	nc|ENSG00000075651|Q13393-2|PLD1	MULTI-SECPEP	A375_MHC_IP_R2	2	1123.2596435546875	1	1122.6405	1121.63323	0.29924	0.00033594	-3.4639	-0.0038887	-3.1647	-0.0035528	1122.638224166349	115.73	0.50584	116.42	116.04	116.54	0.68999					12	9	2	0	0	0	0.76187	1	43571	43571		7.2892	6.8885	1	3475700			8191	1617	5885	5935	7956	7956					0.07727451963046406
EDYNSFSQVP	10	Unmodified	_EDYNSFSQVP_					0	0	0		CFHR5|p.P41S|1|0.1|ENSG00000134389|chr1:196982947-196982947|C/T|missense_variant	CFHR5|p.P41S|1|0.1|ENSG00000134389|chr1:196982947-196982947|C/T|missense_variant	CFHR5|p.P41S|1|0.1|ENSG00000134389|chr1:196982947-196982947|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	592.7214965820312	2	593.256568	1184.49858	-0.36102	-0.00021418	-1.1612	-0.00068889	-1.5222	-0.00090307	593.2558978266954	61.731	0.35616	61.731	61.432	61.788	0					8	6	2	0	0	0	0.92957	1	22150	22150		1.3295	0	1	1573800			8192	380	5886	5936	7957	7957					-0.08628653249525087
EDYPDPQDSKD	11	Unmodified	_EDYPDPQDSKD_					0	0	0		nc|ENSG00000143748|O15381-5|NVL;nc|ENSG00000143748|O15381-3|NVL	nc|ENSG00000143748|O15381-5|NVL	nc|ENSG00000143748|O15381-5|NVL	MULTI-SECPEP	A375_MHC_IP_R1	1	655.16455078125	2	654.764954	1307.51536	-0.59423	-0.00038908	-0.07258	-4.7523E-05	-0.66681	-0.00043661	654.7648542236561	27.711	0.65566	27.711	27.482	28.138	0					37	12	4	0	0	0	0.86796	1	8431	8431		20.415	20.415	1	20082000			8193	14655	5887	5937	7958	7958					-0.12610197154231173
EDYRRYQDW	9	Unmodified	_EDYRRYQDW_					0	0	0		CRYGD|p.G149E|1|0.18|ENSG00000118231|chr2:208121752-208121752|C/T|missense_variant	CRYGD|p.G149E|1|0.18|ENSG00000118231|chr2:208121752-208121752|C/T|missense_variant	CRYGD|p.G149E|1|0.18|ENSG00000118231|chr2:208121752-208121752|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	444.2929992675781	3	444.198548	1329.57381	-0.69865	-0.00031034	3.7978	0.001687	3.0992	0.0013767	444.2000224439432	20.533	0.30358	21.143	20.907	21.21	0.61029					6	5	2	0	0	0	0.81166	1	6411	6411		1.0715	0.61694	1	512820			8194	667	5888	5938	7959	7959					-0.07779050998442472
EDYVRTPV	8	Unmodified	_EDYVRTPV_					0	0	0		ENSG00000101680|ENST00000389658|LAMA1;ENST00000579014.5_1_18:6942080-7042306:-|nuORF;LAMA1|p.T1171S|1|0.62|ENSG00000101680|chr18:7011476-7011476|T/A|missense_variant	ENSG00000101680|ENST00000389658|LAMA1	ENSG00000101680|ENST00000389658|LAMA1	MULTI-SECPEP	A375_MHC_IP_R1	1	490.1664733886719	2	489.748182	977.481811	-0.27602	-0.00013518	0.72984	0.00035744	0.45382	0.00022226	489.74831580145843	52.198	0.91651	52.198	51.879	52.796	0					30	17	4	0	0	0	0.90224	1	18546	18546		4.756	0	1	3116500			8195	2318	5889	5939	7960	7960					-0.007831093448089632
EDYYPGRL	8	Unmodified	_EDYYPGRL_					0	0	0		ENSG00000163637|ENST00000638394|PRICKLE2	ENSG00000163637|ENST00000638394|PRICKLE2	ENSG00000163637|ENST00000638394|PRICKLE2	MULTI-SECPEP	A375_MHC_IP_R1	1	1012.8895874023438	1	1012.47344	1011.46616	0.43305	0.00043845	-0.52415	-0.00053069	-0.091102	-9.2238E-05	1012.4744365320325	108.69	1.2697	108.69	108.56	109.83	0					36	24	2	0	0	0	0.93416	1	39853	39853		9.3474	9.3474	1	7106000			8196	6700	5890	5940	7961	7961					-0.03911395861860001
EEAAKGGGV	9	Unmodified	_EEAAKGGGV_					0	0	0		nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8;nc|ENSG00000214655|A7E2V4-2|ZSWIM8;ENST00000433366.6_1_10:75557251-75561274:+|nuORF	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	MSMS	A375_MHC_IP_R1	1	409.1448974609375	2	409.20615	816.397747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.71	1	42.71	42.21	43.21	0								0	0	0	0.15486	1	14813	14813		10.824	0	1				8197	9621	5891	5941	7962	7962					-0.01779640441702668
EEAAQRLEYL	10	Unmodified	_EEAAQRLEYL_					0	0	0		nc|ENSG00000075826|Q9NQW1-5|SEC31B;ENSG00000075826|ENST00000370345|SEC31B	nc|ENSG00000075826|Q9NQW1-5|SEC31B	nc|ENSG00000075826|Q9NQW1-5|SEC31B	MULTI-MSMS	A375_MHC_IP_R1	1	408.2747802734375	3	407.875182	1220.60372	-0.50626	-0.00020649	0.44376	0.000181	-0.062496	-2.549E-05	407.87532229870885	30.348	0.85929	30.348	30.099	30.959	0					48	16	4	0	0	0	0.57505	1	9616	9616		14.957	4.0582	1	14710000			8198	1623	5892	5942	7963	7963					0.002238879469132371
EEAAQRLEYL	10	Unmodified	_EEAAQRLEYL_					0	0	0		nc|ENSG00000075826|Q9NQW1-5|SEC31B;ENSG00000075826|ENST00000370345|SEC31B	nc|ENSG00000075826|Q9NQW1-5|SEC31B	nc|ENSG00000075826|Q9NQW1-5|SEC31B	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	407.875182	1220.60372	-0.43546	-0.00017761	0.1901	7.7539E-05	-0.24535	-0.00010007	407.87520512375846	29.857	0.85925	30.556	30.134	30.993	0.69872	0.10404	-0.00011103	NaN	14.957	46	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17660000			8199	1623	5892	5942							0.002238879469132371
EEAASVPVVY	10	Unmodified	_EEAASVPVVY_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	A375_MHC_IP_R2	2	532.6688842773438	2	532.268947	1062.52334	-0.68145	-0.00036272	-0.12571	-6.6909E-05	-0.80716	-0.00042963	532.2686014535833	76.448	0.50806	77.188	76.943	77.451	0.74052					14	9	2	0	0	0	0.23156	1	29055	29055		46.021	25.567	1	1815900			8200	7431	5893	5943	7964	7964					-0.005419733761300449
EEACDLAALY	10	Unmodified	_EEACDLAALY_					0	0	0			REV__ENSG00000116260|ENST00000367602|QSOX1	REV__ENSG00000116260|ENST00000367602|QSOX1	MULTI-SECPEP	A375_MHC_IP_R2	2	549.6771850585938	2	549.244615	1096.47468	-0.74735	-0.00041048	3.6198	0.0019882	2.8725	0.0015777	549.2453744838759	67.664	0.61067	68.4	68.052	68.663	0.73631					18	11	3	0	0	0	0.83086	1	25651	25651		21.747	14.457	1	1228500	+		8201	17952	5894	5944	7965	7965					-0.06970210007557398
EEACQLAQFK	10	Unmodified	_EEACQLAQFK_					0	0	0		ENSG00000164978|ENST00000379158|NUDT2	ENSG00000164978|ENST00000379158|NUDT2	ENSG00000164978|ENST00000379158|NUDT2	MULTI-MSMS	A375_MHC_IP_R2	2	584.1788940429688	2	583.779156	1165.54376	-1.0825	-0.00063192	-0.092238	-5.3846E-05	-1.1747	-0.00068577	583.7791137849074	29.519	0.60634	30.218	30.032	30.638	0.69872					20	11	3	0	0	0	0.70027	1	10367	10367		19.257	2.1441	1	2757800			8202	6901	5895	5945	7966	7966					-0.032391259880114376
EEACSGTSFY	10	Unmodified	_EEACSGTSFY_					0	0	0			REV__nc|ENSG00000166938|Q8TF46-2|DIS3L	REV__nc|ENSG00000166938|Q8TF46-2|DIS3L	MSMS	A375_MHC_IP_R2	2	547.1786499023438	2	547.210772	1092.40699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76	1	76.741	76.241	77.241	0.74052								0	0	0	0.15308	1	28851	28851		10.824	2.2306	1		+		8203	20719	5896	5946	7967	7967					-0.1355165993834362
EEADDWLRY	9	Unmodified	_EEADDWLRY_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENSG00000068976|ENST00000164139|PYGM;ENST00000530336.2_1_14:51390668-51411121:-|nuORF;nc|ENSG00000068976|P11217-2|PYGM;PYGL|p.G187E|1|0.06|ENSG00000100504|chr14:50924069-50924069|C/T|missense_variant;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R1	1	599.1767578125	2	598.76456	1195.51457	-0.53339	-0.00031937	0.055223	3.3066E-05	-0.47816	-0.00028631	598.7646762141022	80.807	0.81205	80.807	80.39	81.202	0					38	15	4	0	0	0	0.27064	1	29420	29420		32.786	21.145	1	9050600			8204	2241;2187	5897	5947	7968	7968					-0.07536947012613382
EEADDWLRY	9	Unmodified	_EEADDWLRY_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENSG00000068976|ENST00000164139|PYGM;ENST00000530336.2_1_14:51390668-51411121:-|nuORF;nc|ENSG00000068976|P11217-2|PYGM;PYGL|p.G187E|1|0.06|ENSG00000100504|chr14:50924069-50924069|C/T|missense_variant;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R2	2	599.1769409179688	2	598.76456	1195.51457	-0.53273	-0.00031898	-0.72025	-0.00043126	-1.253	-0.00075024	598.7641538011337	80.239	1.015	80.983	80.401	81.416	0.74474					38	19	3	0	0	0	0.44024	1	30328	30328		22.736	22.736	1	5171200			8205	2241;2187	5897	5947	7969	7969					-0.07536947012613382
EEADDWLRY	9	Unmodified	_EEADDWLRY_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENSG00000068976|ENST00000164139|PYGM;ENST00000530336.2_1_14:51390668-51411121:-|nuORF;nc|ENSG00000068976|P11217-2|PYGM;PYGL|p.G187E|1|0.06|ENSG00000100504|chr14:50924069-50924069|C/T|missense_variant;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	598.76456	1195.51457	-0.53273	-0.00031898	-0.72025	-0.00043126	-1.253	-0.00075024	598.7641538011337	80.239	1.015	80.983	80.401	81.416	0.74474	0.088009	-0.0005743	NaN	32.786	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5171200			8206	2241;2187	5897	5947							-0.07536947012613382
EEADGGLKSW	10	Unmodified	_EEADGGLKSW_					0	0	0		ENSG00000116489|ENST00000263168|CAPZA1	ENSG00000116489|ENST00000263168|CAPZA1	ENSG00000116489|ENST00000263168|CAPZA1	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6532592773438	2	546.253828	1090.4931	-0.009917	-5.4172E-06	-0.66732	-0.00036453	-0.67724	-0.00036994	546.2535270706679	44.725	0.35516	44.725	44.523	44.878	0					11	6	2	0	0	0	0.40545	1	15666	15666		55.235	25.01	1	1850900			8207	3400	5898	5948	7970	7970					-0.048523320413323745
EEADHTVGF	9	Unmodified	_EEADHTVGF_					0	0	0		nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	nc|ENSG00000095319|Q5SRE5-2|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-MSMS	A375_MHC_IP_R1	1	502.6582336425781	2	502.719621	1003.42469	-0.46869	-0.00023562	0.36768	0.00018484	-0.10101	-5.0782E-05	502.7197640923153	37.831	0.40884	37.831	37.607	38.016	0					19	7	3	0	0	0	0.050162	1	12821	12821		64.236	39.562	1	4836300			8208	2039	5899	5949	7971	7971					-0.07688576621194443
EEADHTVGF	9	Unmodified	_EEADHTVGF_					0	0	0		nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	nc|ENSG00000095319|Q5SRE5-2|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-MSMS	A375_MHC_IP_R2	2	502.658203125	2	502.719621	1003.42469	-1.2786	-0.00064276	0.61421	0.00030877	-0.66436	-0.00033399	502.7198549118504	37.038	0.6591	37.809	37.564	38.223	0.7709					19	12	2	0	0	0	0.050162	1	13577	13577		64.236	41.088	1	5009000			8209	2039	5899	5949	7972	7972					-0.07688576621194443
EEADKLVRQY	10	Unmodified	_EEADKLVRQY_					0	0	0		nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	MULTI-MSMS	A375_MHC_IP_R1	1	417.95068359375	3	417.550698	1249.63027	0.13889	5.7995E-05	-0.15494	-6.4696E-05	-0.016047	-6.7002E-06	417.5506106326151	31.332	0.75916	31.332	30.908	31.667	0					35	14	4	0	0	0	0.019617	1	9978	9978		85.764	61.963	1	33102000			8210	2589;14524	5900	5950	7973	7973					0.01543576838230365
EEADKLVRQY	10	Unmodified	_EEADKLVRQY_					0	0	0		nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	MULTI-SECPEP	A375_MHC_IP_R1	1	626.22216796875	2	625.822409	1249.63027	-0.62031	-0.00038821	0.076295	4.7747E-05	-0.54402	-0.00034046	625.8224624923113	31.299	0.45565	31.299	31.059	31.514	0					24	8	4	0	0	0	0.058649	1	9998	9998		97.741	59.565	1	8105400			8211	2589;14524	5900	5950	7974	7974					0.01543576838230365
EEADKLVRQY	10	Unmodified	_EEADKLVRQY_					0	0	0		nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	MULTI-MSMS	A375_MHC_IP_R2	2	417.9505310058594	3	417.550698	1249.63027	-0.067285	-2.8095E-05	-0.52602	-0.00021964	-0.59331	-0.00024773	417.55046208664396	30.624	0.60518	31.342	31.064	31.669	0.71857					37	11	4	0	0	0	0.019617	1	10740	10740		85.764	60.609	1	35674000			8212	2589;14524	5900	5950	7975	7975					0.01543576838230365
EEADKLVRQY	10	Unmodified	_EEADKLVRQY_					0	0	0		nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	MULTI-SECPEP	A375_MHC_IP_R2	2	626.22216796875	2	625.822409	1249.63027	-0.81694	-0.00051126	-0.27495	-0.00017207	-1.0919	-0.00068333	625.8222100515674	30.585	0.4535	31.304	31.114	31.567	0.71857					20	8	3	0	0	0	4.4249E-08	1	10769	10769		222.22	143.49	1	8611200			8213	2589;14524	5900	5950	7976	7976					0.01543576838230365
EEAEGEAGEMA	11	Unmodified	_EEAEGEAGEMA_					0	0	0			REV__nc|ENSG00000185437|P55822-2|SH3BGR	REV__nc|ENSG00000185437|P55822-2|SH3BGR	MSMS	A375_MHC_IP_R2	2	561.6426391601562	2	561.716418	1121.41828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.637	1	97.393	96.893	97.893	0.75586								0	0	0	0.16108	1	36688	36688		13.042	0	1		+		8214	21893	5901	5951	7977	7977					-0.1375688263487973
EEAEGLLRTF	10	Unmodified	_EEAEGLLRTF_					0	0	0		chr5:39381564-39382618|178|31.72|0.0|21.6|-|1|None,DAB2|1	chr5:39381564-39382618|178|31.72|0.0|21.6|-|1|None,DAB2|1	chr5:39381564-39382618|178|31.72|0.0|21.6|-|1|None,DAB2|1	MULTI-SECPEP	A375_MHC_IP_R1	1	582.1632080078125	2	582.798403	1163.58225	-0.56202	-0.00032754	0.75954	0.00044266	0.19753	0.00011512	582.7985583397807	30.415	0.90899	30.415	30.15	31.059	0					55	17	5	0	0	0	0.68963	1	9618	9618		34.932	1.4872	1	31034000			8215	486	5902	5952	7978	7978					0.007005029181982536
EEAEIFQKKL	10	Unmodified	_EEAEIFQKKL_					0	0	0		ENSG00000166164|ENST00000394688|BRD7;nc|ENSG00000166164|Q9NPI1-2|BRD7	ENSG00000166164|ENST00000394688|BRD7	ENSG00000166164|ENST00000394688|BRD7	MULTI-MSMS	A375_MHC_IP_R1	1	412.627685546875	3	412.227444	1233.6605	0.15606	6.4332E-05	-0.44038	-0.00018154	-0.28432	-0.00011721	412.2274802362294	43.904	0.56022	43.904	43.553	44.113	0					21	10	3	0	0	0	0.36253	1	15333	15333		36.395	17.674	1	2578700			8216	7031	5903	5953	7979	7979					0.05301935503416644
EEAEIFQKKL	10	Unmodified	_EEAEIFQKKL_					0	0	0		ENSG00000166164|ENST00000394688|BRD7;nc|ENSG00000166164|Q9NPI1-2|BRD7	ENSG00000166164|ENST00000394688|BRD7	ENSG00000166164|ENST00000394688|BRD7	MULTI-MSMS	A375_MHC_IP_R2	2	412.62725830078125	3	412.227444	1233.6605	0.1148	4.7325E-05	-0.45021	-0.00018559	-0.33541	-0.00013826	412.22721920296874	43.062	0.50636	43.834	43.573	44.079	0.7724					20	9	3	0	0	0	0.46263	1	16053	16053		30.431	13.383	1	2486500			8217	7031	5903	5953	7980	7980					0.05301935503416644
EEAEIIRKY	9	Unmodified	_EEAEIIRKY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111591276-111591579:+|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	A375_MHC_IP_R1	1	384.6083068847656	3	384.208273	1149.60299	-0.038594	-1.4828E-05	0.0059262	2.2769E-06	-0.032668	-1.2551E-05	384.20833492304615	30.328	3.2928	30.328	30.049	33.342	0					213	64	6	0	0	0	0.017012	3	9559	9559;9612;10032		87.258	47.019	1	1056499999.9999999			8218	5434	5904	5954	7981;7982;7983	7981					0.034170932978668134
EEAEIIRKY	9	Unmodified	_EEAEIIRKY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111591276-111591579:+|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	A375_MHC_IP_R1	1	576.2084350585938	2	575.808771	1149.60299	-0.51055	-0.00029398	0.13859	7.9803E-05	-0.37196	-0.00021418	575.8088283961232	30.326	1.7198	30.326	30.049	31.769	0					109	33	5	0	0	0	0.0075889	1	9576	9576		223.81	151.89	1	387660000			8219	5434	5904	5954	7984	7984					0.034170932978668134
EEAEIIRKY	9	Unmodified	_EEAEIIRKY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111591276-111591579:+|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	A375_MHC_IP_R2	2	384.9424743652344	3	384.208273	1149.60299	-0.57917	-0.00022252	0.35349	0.00013581	-0.22568	-8.6709E-05	384.2084877177795	29.761	3.2461	30.459	30.083	33.329	0.69872					205	63	6	0	0	0	0.0095341	2	10325	10325;10384		96.936	56.696	1	1144400000			8220	5434	5904	5954	7985;7986	7985					0.034170932978668134
EEAEIIRKY	9	Unmodified	_EEAEIIRKY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111591276-111591579:+|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	A375_MHC_IP_R2	2	576.2086181640625	2	575.808771	1149.60299	-0.65954	-0.00037977	0.13263	7.6372E-05	-0.52691	-0.0003034	575.8088380774714	29.734	1.7692	30.433	30.083	31.852	0.69872					108	34	6	0	0	0	0.0075889	1	10333	10333		223.81	155.73	1	361930000			8221	5434	5904	5954	7987	7987					0.034170932978668134
EEAEKPKSPPA	11	Unmodified	_EEAEKPKSPPA_					0	0	0			REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	MULTI-MSMS	A375_MHC_IP_R1	1	394.5996398925781	3	394.871549	1181.59282	-0.33766	-0.00013333	-0.12536	-4.9502E-05	-0.46302	-0.00018283	394.87149739237657	30.371	0.859	30.371	30.15	31.009	0					53	16	4	0	0	0	0.66658	1	9626	9626		10.315	0.55098	1	20635000	+		8222	17508	5905	5955	7988	7988					0.00928485572626414
EEAEKPKSPPA	11	Unmodified	_EEAEKPKSPPA_					0	0	0			REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	MULTI-SECPEP	A375_MHC_IP_R1	1	395.63250732421875	3	394.871549	1181.59282	-0.33766	-0.00013333	-0.12536	-4.9502E-05	-0.46302	-0.00018283	394.87149739237657	30.371	0.859	30.371	30.15	31.009	0					53	16	4	0	0	0	0.98782	1	9740	9740		15.538	1.3203	1	20635000	+		8223	17508	5905	5955	7989	7989					0.00928485572626414
EEAENTLQSF	10	Unmodified	_EEAENTLQSF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R1	1	584.6620483398438	2	584.26185	1166.50915	-0.53348	-0.00031169	0.52767	0.0003083	-0.0058094	-3.3942E-06	584.2620294210458	67.117	1.0208	67.117	66.684	67.704	0					53	19	4	0	0	0	2.5834E-07	2	24246	24246;24465		205.91	133.99	1	25137000			8224	1093	5906	5956	7990;7991	7990					-0.06744670595094249
EEAENTLQSF	10	Unmodified	_EEAENTLQSF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R2	2	584.6621704101562	2	584.26185	1166.50915	-0.58532	-0.00034198	0.30007	0.00017532	-0.28525	-0.00016666	584.2619445743143	66.452	1.0192	67.188	66.831	67.85	0.73631					54	19	4	0	0	0	0.0012231	1	25121	25121		145.13	85.761	1	19918000			8225	1093	5906	5956	7992	7992					-0.06744670595094249
EEAEQVGALY	10	Unmodified	_EEAEQVGALY_					0	0	0		ENSG00000064835|ENST00000350375|POU1F1;nc|ENSG00000064835|P28069-2|POU1F1	ENSG00000064835|ENST00000350375|POU1F1	ENSG00000064835|ENST00000350375|POU1F1	MULTI-MSMS	A375_MHC_IP_R2	2	555.1848754882812	2	554.761486	1107.50842	-1.1854	-0.0006576	-2.935	-0.0016282	-4.1204	-0.0022858	554.7629297271989	26.26	1.0172	26.92	26.245	27.262	0.65992					53	19	5	0	0	0	0.63639	1	8786	8786		18.146	2.2992	1	6495000			8226	1361	5907	5957	7993	7993					-0.04103465244133986
EEAERELERW	10	Unmodified	_EEAERELERW_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R2	2	449.1815185546875	3	449.549357	1345.62624	-0.38484	-0.00017301	-0.043031	-1.9345E-05	-0.42788	-0.00019235	449.5493580356269	41.632	0.40834	42.406	42.198	42.607	0.77451					12	7	2	0	0	0	0.78163	1	15455	15455		19.987	14.119	1	1443700			8227	14788	5908	5958	7994	7994					-0.03274512655480066
EEAERELERW	10	Unmodified	_EEAERELERW_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MATCH	A375_MHC_IP_R1	1		3	449.549357	1345.62624	-0.022665	-1.0189E-05	-0.32072	-0.00014418	-0.34338	-0.00015437	449.5492847905316	42.421	0.50551	42.421	42.132	42.638	0	0.0073913	-0.0001833	NaN	19.987	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1110800			8228	14788	5908	5958							-0.03274512655480066
EEAERPLHF	9	Unmodified	_EEAERPLHF_					0	0	0		nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;ENST00000465814.5_1_11:72396711-72407721:-|nuORF;nc|ENSG00000186635|Q96P48-5|ARAP1;ENST00000544958.5_1_11:72404190-72406109:-|nuORF;ARAP1|p.A1238V|1|0.55|ENSG00000186635|chr11:72693787-72693787|G/A|missense_variant	nc|ENSG00000186635|Q96P48-3|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	376.9209899902344	3	376.520851	1126.54072	0.069597	2.6205E-05	0.36244	0.00013647	0.43204	0.00016267	376.52085636249234	35.895	0.4071	36.659	36.435	36.842	0.76338					15	7	3	0	0	0	0.63622	1	13052	13052		24.991	11.085	1	3586900			8229	8766	5909	5959	7995	7995					-0.017486330504880243
EEAESHNSEC	10	Unmodified	_EEAESHNSEC_					0	0	0			REV__RGL1|p.N600Ffs*47|1|0.04|ENSG00000143344|chr1:183916494-183916495|AA/-|frameshift_variant	REV__RGL1|p.N600Ffs*47|1|0.04|ENSG00000143344|chr1:183916494-183916495|AA/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	567.7007446289062	2	567.703842	1133.39313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.164	1	67.9	67.4	68.4	0.73631								0	0	0	0.15308	1	25443	25443		10.824	3.5347	1		+		8230	19348	5910	5960	7996	7996					-0.16822937437427754
EEAEWQTRW	9	Unmodified	_EEAEWQTRW_					0	0	0		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2;ENST00000471817.2_1_20:60866739-60868940:+|nuORF	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MULTI-MSMS	A375_MHC_IP_R2	2	617.7110595703125	2	617.778002	1233.54145	-0.66236	-0.00040919	-0.33555	-0.00020729	-0.99791	-0.00061649	617.7783270310047	62.783	0.50555	63.526	63.282	63.788	0.74263					14	9	2	0	0	0	0.31062	1	23885	23885		29.841	11.694	1	2701100			8231	4265	5911	5961	7997	7997					-0.06597838401444278
EEAEWQTRWFY	11	Unmodified	_EEAEWQTRWFY_					0	0	0		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2;ENST00000471817.2_1_20:60866739-60868940:+|nuORF	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MSMS	A375_MHC_IP_R2	2	515.3580322265625	3	515.565008	1543.67319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.86	1	71.594	71.094	72.094	0.73421								0	0	0	0.16302	1	26869	26869		1.2148	0	1				8232	4265	5912	5962	7998	7998					-0.07689653104353056
EEAEYVRALF	10	Unmodified	_EEAEYVRALF_					0	0	0		nc|ENSG00000167193|P46108-2|CRK;ENSG00000167193|ENST00000300574|CRK	nc|ENSG00000167193|P46108-2|CRK	nc|ENSG00000167193|P46108-2|CRK	MULTI-SECPEP	A375_MHC_IP_R1	1	614.2054443359375	2	613.806228	1225.5979	-0.51506	-0.00031615	-0.4029	-0.0002473	-0.91796	-0.00056345	613.8055341082003	90.303	0.40557	90.303	90.133	90.539	0					16	7	3	0	0	0	0.22519	1	33215	33215		67.838	37.202	1	1848700			8233	7167	5913	5963	7999	7999					-0.005872105647767967
EEAFAIFRKF	10	Unmodified	_EEAFAIFRKF_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	A375_MHC_IP_R1	1	420.2923889160156	3	419.892396	1256.65536	0.21846	9.1732E-05	-0.34143	-0.00014336	-0.12297	-5.1632E-05	419.8922402769113	88.705	0.55981	88.705	88.46	89.019	0					20	10	3	0	0	0	0.35635	1	32573	32573		51.488	41.173	1	3658300			8234	5230	5914	5964	8000	8000					0.03729676431453299
EEAFAIFRKF	10	Unmodified	_EEAFAIFRKF_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	A375_MHC_IP_R1	1	629.7359619140625	2	629.334956	1256.65536	-0.49219	-0.00030975	-1.1405	-0.00071777	-1.6327	-0.0010275	629.3348370260213	88.642	0.50993	88.642	88.46	88.97	0					13	9	2	0	0	0	0.5901	1	32604	32604		36.506	14.916	1	1782400			8235	5230	5914	5964	8001	8001					0.03729676431453299
EEAFAIFRKF	10	Unmodified	_EEAFAIFRKF_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	A375_MHC_IP_R2	2	420.2921142578125	3	419.892396	1256.65536	-0.012164	-5.1075E-06	0.045583	1.914E-05	0.03342	1.4033E-05	419.8924042626022	87.876	0.60886	88.608	88.316	88.925	0.7318					27	11	3	0	0	0	0.60589	1	33453	33453		29.437	19.122	1	3771000			8236	5230	5914	5964	8002	8002					0.03729676431453299
EEAFKNAAQTL	11	Unmodified	_EEAFKNAAQTL_					0	0	0			REV__tr|U7T027|U7T027_FUSNUChaperoneproteinDnaKOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaKPE=2SV=1	REV__tr|U7T027|U7T027_FUSNUChaperoneproteinDnaKOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaKPE=2SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	408.26666259765625	3	407.875182	1220.60372	-0.43546	-0.00017761	0.1901	7.7539E-05	-0.24535	-0.00010007	407.87520512375846	29.857	0.85925	30.556	30.134	30.993	0.69872					46	16	4	0	0	0	0.72649	1	10447	10447		6.6235	0.43161	1	17660000	+		8237	28666	5915	5965	8003	8003					0.002238879469132371
EEAFNQSQNL	10	Unmodified	_EEAFNQSQNL_					0	0	0			REV__ENSG00000117724|ENST00000366955|CENPF	REV__ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	A375_MHC_IP_R2	2	590.6671752929688	2	590.267467	1178.52038	-0.89819	-0.00053017	-0.001772	-1.0459E-06	-0.89996	-0.00053122	590.2676551060783	60.112	0.25317	60.859	60.704	60.957	0.74714					8	4	3	0	0	0	0.69306	1	22772	22772		13.906	0.86358	1	2001400	+		8238	18020	5916	5966	8004	8004					-0.06173848500930035
EEAFRGTAF	9	Unmodified	_EEAFRGTAF_					0	0	0			REV__ENSG00000204007|ENST00000371763|GLT6D1	REV__ENSG00000204007|ENST00000371763|GLT6D1	MULTI-SECPEP	A375_MHC_IP_R1	1	514.6453247070312	2	514.245806	1026.47706	-0.83169	-0.0004277	0.17275	8.8838E-05	-0.65894	-0.00033886	514.2458395934506	26.168	0.35572	26.168	26.017	26.373	0					15	6	3	0	0	0	0.16676	1	7787	7787		58.679	2.5018	1	4172100	+		8239	22481	5917	5967	8005	8005					-0.03511993487563814
EEAFRGTAF	9	Unmodified	_EEAFRGTAF_					0	0	0			REV__ENSG00000204007|ENST00000371763|GLT6D1	REV__ENSG00000204007|ENST00000371763|GLT6D1	MULTI-MATCH	A375_MHC_IP_R2	2		2	514.245806	1026.47706	-1.2116	-0.00062306	0.35492	0.00018252	-0.85668	-0.00044055	514.246009216635	25.585	0.55915	26.244	25.941	26.5	0.65992	0.038239	0.00013322	NaN	58.679	15	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2354500	+		8240	22481	5917	5967							-0.03511993487563814
EEAFTSEHW	9	Unmodified	_EEAFTSEHW_					0	0	0		ENSG00000163527|ENST00000295770|STT3B;ENST00000463044.1_1_3:31667577-31674651:+|nuORF	ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	MULTI-MSMS	A375_MHC_IP_R1	1	568.6382446289062	2	568.238178	1134.4618	-0.23223	-0.00013196	-0.11219	-6.3749E-05	-0.34442	-0.00019571	568.238088601574	56.169	0.55627	56.169	55.891	56.447	0					22	10	3	0	0	0	0.029064	1	20132	20132		85.357	45.399	1	3569300			8241	6678	5918	5968	8006	8006					-0.10004905075402348
EEAFTSEHW	9	Unmodified	_EEAFTSEHW_					0	0	0		ENSG00000163527|ENST00000295770|STT3B;ENST00000463044.1_1_3:31667577-31674651:+|nuORF	ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	MULTI-MSMS	A375_MHC_IP_R2	2	568.637939453125	2	568.238178	1134.4618	-0.43581	-0.00024764	-0.083095	-4.7218E-05	-0.5189	-0.00029486	568.2380149946662	55.496	0.50643	56.247	55.933	56.439	0.75075					18	9	3	0	0	0	0.066859	2	20963	20963;20979		74.423	49.023	1	3194400			8242	6678	5918	5968	8007;8008	8007					-0.10004905075402348
EEAGFTGRRM	10	Unmodified	_EEAGFTGRRM_					0	0	0		ENSG00000011007|ENST00000613537|ELOA;nc|ENSG00000011007|Q14241-1|ELOA	ENSG00000011007|ENST00000613537|ELOA	ENSG00000011007|ENST00000613537|ELOA	MULTI-SECPEP	A375_MHC_IP_R1	1	384.9400939941406	3	385.185474	1152.53459	-0.02208	-8.505E-06	0.068092	2.6228E-05	0.046011	1.7723E-05	385.18550597847565	23.713	0.25401	23.713	23.533	23.787	0					9	4	3	0	0	0	0.87043	1	6574	6574		9.7643	6.1772	1	4614100			8243	988	5919	5969	8009	8009					-0.03557474553645079
EEAGVVHRDL	10	Unmodified	_EEAGVVHRDL_					0	0	0		nc|ENSG00000162302|O75676-2|RPS6KA4;ENSG00000162302|ENST00000334205|RPS6KA4	nc|ENSG00000162302|O75676-2|RPS6KA4	nc|ENSG00000162302|O75676-2|RPS6KA4	MULTI-SECPEP	A375_MHC_IP_R1	1	562.1753540039062	2	562.78837	1123.56219	-0.43814	-0.00024658	3.5694	0.0020088	3.1313	0.0017622	562.7907144915596	43.954	0.61196	43.954	43.706	44.318	0					15	11	2	0	0	0	0.81654	1	15340	15340		24.021	15.275	1	837570			8244	6517	5920	5970	8010	8010					0.005347519782162635
EEAHLNTSF	9	Unmodified	_EEAHLNTSF_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000114978|ENST00000396049|MOB1A;ENSG00000173542|ENST00000309395|MOB1B;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	524.6401977539062	2	524.240721	1046.46689	-0.32021	-0.00016787	-0.23898	-0.00012529	-0.55919	-0.00029315	524.2405757563096	42.585	0.70795	42.585	42.285	42.993	0					46	13	4	0	0	0	0.0094788	2	14729	14729;14810		107.19	63.329	1	18191000			8245	3262	5921	5971	8011;8012	8011					-0.054486012128108996
EEAHLNTSF	9	Unmodified	_EEAHLNTSF_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000114978|ENST00000396049|MOB1A;ENSG00000173542|ENST00000309395|MOB1B;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	524.6403198242188	2	524.240721	1046.46689	-0.51224	-0.00026854	-0.40954	-0.0002147	-0.92177	-0.00048323	524.2404904776644	41.841	1.0217	42.615	42.249	43.27	0.77451					61	19	5	0	0	0	0.018546	1	15488	15488		85.272	41.414	1	20252000			8246	3262	5921	5971	8013	8013					-0.054486012128108996
EEAIAYGRKL	10	Unmodified	_EEAIAYGRKL_					0	0	0		ENST00000530119.5_1_11:747481-760254:+|nuORF;ENST00000533796.1_1_11:755745-760254:+|nuORF;nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1;ENST00000532685.1_1_11:747481-756003:+|nuORF	ENST00000530119.5_1_11:747481-760254:+|nuORF	ENST00000530119.5_1_11:747481-760254:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	574.6978149414062	2	575.316763	1148.61897	-0.23567	-0.00013558	-0.13314	-7.66E-05	-0.36881	-0.00021218	575.3163815018805	31.128	0.25586	31.846	31.77	32.026	0.71857					6	4	2	0	0	0	0.60589	1	11025	11025		34.402	13.987	1	1661900			8247	8064	5922	5972	8014	8014					0.05060799534749094
EEAIHKFAL	9	Unmodified	_EEAIHKFAL_					0	0	0		ENSG00000086300|ENST00000338523|SNX10;nc|ENSG00000086300|Q9Y5X0-2|SNX10	ENSG00000086300|ENST00000338523|SNX10	ENSG00000086300|ENST00000338523|SNX10	MULTI-MSMS	A375_MHC_IP_R1	1	530.2129516601562	2	529.287474	1056.5604	-0.46354	-0.00024535	-0.94157	-0.00049836	-1.4051	-0.00074371	529.2875617129123	96.858	0.70845	96.858	96.529	97.238	0					29	13	3	0	0	0	0.63811	1	35672	35672		12.532	0	1	3526800			8248	1835	5923	5973	8015	8015					0.034377429602727716
EEAIHKFAL	9	Unmodified	_EEAIHKFAL_					0	0	0		ENSG00000086300|ENST00000338523|SNX10;nc|ENSG00000086300|Q9Y5X0-2|SNX10	ENSG00000086300|ENST00000338523|SNX10	ENSG00000086300|ENST00000338523|SNX10	MULTI-MATCH	A375_MHC_IP_R2	2		2	529.287474	1056.5604	-0.55598	-0.00029427	-0.75221	-0.00039813	-1.3082	-0.00069241	529.2873243053687	96.197	0.76176	96.948	96.551	97.313	0.75045	0.044766	7.0981E-05	NaN	12.532	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2732900			8249	1835	5923	5973							0.034377429602727716
EEAINGNDDL	10	Unmodified	_EEAINGNDDL_					0	0	0			REV__ENSG00000183291|ENST00000331835|SELENOF	REV__ENSG00000183291|ENST00000331835|SELENOF	MSMS	A375_MHC_IP_R2	2	545.1902465820312	2	545.238375	1088.4622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.744	1	71.478	70.978	71.978	0.73421								0	0	0	0.15105	1	26820	26820		15.847	1.2655	1		+		8250	21747	5924	5974	8016	8016					-0.07849530146245343
EEAINTSAFQ	10	Unmodified	_EEAINTSAFQ_					0	0	0			REV__nc|ENSG00000138698|P52306-6|RAP1GDS1	REV__nc|ENSG00000138698|P52306-6|RAP1GDS1	MULTI-MSMS	A375_MHC_IP_R1	1	555.1846313476562	2	555.259111	1108.50367	-0.83772	-0.00046515	0.77599	0.00043088	-0.061722	-3.4272E-05	555.7601974738226	26.804	1.0093	26.804	26.118	27.128	0					42	19	4	0	0	0	0.6502	1	7985	7985		17.113	1.2657	1	7580800	+		8251	19113	5925	5975	8017	8017					-0.04624349386904214
EEAINTSAFQ	10	Unmodified	_EEAINTSAFQ_					0	0	0			REV__nc|ENSG00000138698|P52306-6|RAP1GDS1	REV__nc|ENSG00000138698|P52306-6|RAP1GDS1	MULTI-SECPEP	A375_MHC_IP_R1	1	555.1922607421875	2	555.259111	1108.50367	-0.83772	-0.00046515	0.77599	0.00043088	-0.061722	-3.4272E-05	555.7601974738226	26.804	1.0093	26.804	26.118	27.128	0					42	19	4	0	0	0	0.88918	1	7947	7947		18.146	3.3081	1	7580800	+		8252	19113	5925	5975	8018	8018					-0.04624349386904214
EEAISEELPY	10	Unmodified	_EEAISEELPY_					0	0	0		ENST00000469207.5_1_5:141004903-141005622:-|nuORF;ENST00000491581.5_1_5:141004689-141007494:-|nuORF;ENST00000469550.6_1_5:141001037-141014565:-|nuORF;ENSG00000171720|ENST00000305264|HDAC3;nc|ENSG00000171720|O15379-2|HDAC3	ENST00000469207.5_1_5:141004903-141005622:-|nuORF	ENST00000469207.5_1_5:141004903-141005622:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	590.6752319335938	2	590.274426	1178.5343	-0.18121	-0.00010697	1.569	0.00092614	1.3878	0.00081918	590.2754937181669	51.896	0.56115	51.896	51.575	52.136	0					16	10	2	0	0	0	0.66712	1	18474	18474		15.847	1.0089	1	2277700			8253	7631	5926	5976	8019	8019					-0.047826157925328516
EEAKAPKPDTP	11	Unmodified	_EEAKAPKPDTP_					0	0	0			REV__MYLK2|p.R189K|1|0.29|ENSG00000101306|chr20:31821531-31821531|G/A|missense_variant	REV__MYLK2|p.R189K|1|0.29|ENSG00000101306|chr20:31821531-31821531|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	394.5996398925781	3	394.871549	1181.59282	-0.61151	-0.00024147	0.12854	5.0757E-05	-0.48296	-0.00019071	394.87154288476535	29.785	0.85996	30.483	30.083	30.942	0.69872					49	16	4	0	0	0	0.67989	1	10376	10376		9.7643	3.1408	1	26273000	+		8254	27064	5927	5977	8020	8020					0.009284855726036767
EEAKDQDEF	9	Unmodified	_EEAKDQDEF_					0	0	0			REV__ENSG00000143199|ENST00000367851|ADCY10	REV__ENSG00000143199|ENST00000367851|ADCY10	MULTI-SECPEP	A375_MHC_IP_R1	1	556.104248046875	2	555.732926	1109.4513	-0.68154	-0.00037875	0.35347	0.00019643	-0.32807	-0.00018232	555.7329356013709	40.044	0.56025	40.044	39.744	40.304	0					16	10	2	0	0	0	0.73363	1	13734	13734		10.824	1.4765	1	2081600	+		8255	19340	5928	5978	8021	8021					-0.0990493252052147
EEAKKLLFK	9	Unmodified	_EEAKKLLFK_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MSMS	A375_MHC_IP_R2	2	369.28167724609375	3	369.225375	1104.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.635	1	71.369	70.869	71.869	0.73421								0	0	0	0.1521	1	26776	26776		12.873	1.3547	1		+		8256	16952	5929	5979	8022	8022					0.10615462062582992
EEAKLLAGF	9	Unmodified	_EEAKLLAGF_					0	0	0		ENSG00000122550|ENST00000339077|KLHL7;nc|ENSG00000122550|Q8IXQ5-3|KLHL7;ENST00000479288.5_1_7:23145645-23180390:+|nuORF;ENST00000459661.5_1_7:23145645-23164336:+|nuORF	ENSG00000122550|ENST00000339077|KLHL7	ENSG00000122550|ENST00000339077|KLHL7	MULTI-MSMS	A375_MHC_IP_R1	1	489.6687316894531	2	489.26875	976.522947	-0.11646	-5.6978E-05	-0.033563	-1.6421E-05	-0.15002	-7.3399E-05	489.26866238450043	78.514	0.5577	78.514	78.301	78.859	0					16	10	3	0	0	0	0.029064	1	28680	28680		75.761	31.903	1	2831900			8257	3790	5930	5980	8023	8023					0.03374651694662134
EEAKLLAGF	9	Unmodified	_EEAKLLAGF_					0	0	0		ENSG00000122550|ENST00000339077|KLHL7;nc|ENSG00000122550|Q8IXQ5-3|KLHL7;ENST00000479288.5_1_7:23145645-23180390:+|nuORF;ENST00000459661.5_1_7:23145645-23164336:+|nuORF	ENSG00000122550|ENST00000339077|KLHL7	ENSG00000122550|ENST00000339077|KLHL7	MULTI-MSMS	A375_MHC_IP_R2	2	489.6682434082031	2	489.26875	976.522947	-0.57101	-0.00027938	0.089423	4.3752E-05	-0.48158	-0.00023562	489.2686483409759	77.714	0.51038	78.457	78.113	78.624	0.74293					18	9	2	0	0	0	0.018261	1	29492	29492		85.642	41.783	1	1990600			8258	3790	5930	5980	8024	8024					0.03374651694662134
EEAKLLGEIHE	11	Unmodified	_EEAKLLGEIHE_					0	0	0			REV__nc|ENSG00000080546|Q9Y6P5-3|SESN1	REV__nc|ENSG00000080546|Q9Y6P5-3|SESN1	MULTI-MSMS	A375_MHC_IP_R1	1	423.6222229003906	3	423.22247	1266.64558	-0.37936	-0.00016056	0.61961	0.00026223	0.24025	0.00010168	423.22258817114255	26.437	0.45524	26.437	26.221	26.677	0					20	8	3	0	0	0	0.70017	1	7877	7877		15.538	0.58129	1	6166800	+		8259	16750	5931	5981	8025	8025					0.022924436354287536
EEAKLLGEIHE	11	Unmodified	_EEAKLLGEIHE_					0	0	0			REV__nc|ENSG00000080546|Q9Y6P5-3|SESN1	REV__nc|ENSG00000080546|Q9Y6P5-3|SESN1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	423.22247	1266.64558	-0.37936	-0.00016056	0.61961	0.00026223	0.24025	0.00010168	423.22258817114255	26.437	0.45524	26.437	26.221	26.677	0	-0.019477	0.00016936	NaN	15.538	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6166800	+		8260	16750	5931	5981							0.022924436354287536
EEAKLLGEIHE	11	Unmodified	_EEAKLLGEIHE_					0	0	0			REV__nc|ENSG00000080546|Q9Y6P5-3|SESN1	REV__nc|ENSG00000080546|Q9Y6P5-3|SESN1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	423.22247	1266.64558	-0.59567	-0.0002521	0.41489	0.00017559	-0.18079	-7.6513E-05	423.22246238618857	25.816	0.45899	26.476	26.194	26.653	0.65992	0.019477	-9.0568E-05	NaN	15.538	22	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3697900	+		8261	16750	5931	5981							0.022924436354287536
EEAKQIQNL	9	Unmodified	_EEAKQIQNL_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1845703125	2	536.785296	1071.55604	-1.034	-0.00055503	0.31504	0.00016911	-0.71895	-0.00038592	536.7854227502437	30.321	0.7075	30.321	30.15	30.857	0					42	13	5	0	0	0	0.027055	1	9602	9602		134.3	59.367	1	45711000			8262	2847	5932	5982	8026	8026					0.02312233746692982
EEAKQIQNL	9	Unmodified	_EEAKQIQNL_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MATCH	A375_MHC_IP_R2	2		2	536.785296	1071.55604	-1.4094	-0.00075656	0.56813	0.00030497	-0.84129	-0.00045159	536.7855392496303	29.66	0.65551	30.359	30.134	30.79	0.69872	0.018874	0.00010615	NaN	134.3	39	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46091000			8263	2847	5932	5982							0.02312233746692982
EEAKQYYQNAL	11	Unmodified	_EEAKQYYQNAL_					0	0	0			REV__ENSG00000103319|ENST00000263026|EEF2K	REV__ENSG00000103319|ENST00000263026|EEF2K	MULTI-MSMS	A375_MHC_IP_R1	1	453.2855529785156	3	452.885858	1355.63574	0.18534	8.3936E-05	0.075448	3.4169E-05	0.26078	0.00011811	452.885658282077	44.497	0.56046	44.497	44.267	44.827	0					25	10	3	0	0	0	0.7279	1	15542	15542		10.899	0.58372	1	5808700	+		8264	17270	5933	5983	8027	8027					-0.027847443699556607
EEAKRKKPQ	9	Unmodified	_EEAKRKKPQ_					0	0	0			REV__ENSG00000186714|ENST00000335185|CCDC73	REV__ENSG00000186714|ENST00000335185|CCDC73	MULTI-SECPEP	A375_MHC_IP_R1	1	557.7222900390625	2	557.32238	1112.63021	-0.76106	-0.00042415	0.14577	8.1239E-05	-0.61529	-0.00034292	557.322459319462	27.978	0.3017	27.978	27.836	28.138	0					10	5	2	0	0	0	0.77396	1	8601	8601		10.074	0.6908	1	2079500	+		8265	21983	5934	5984	8028	8028					0.07839621628886562
EEAKRKKPQ	9	Unmodified	_EEAKRKKPQ_					0	0	0			REV__ENSG00000186714|ENST00000335185|CCDC73	REV__ENSG00000186714|ENST00000335185|CCDC73	MULTI-MATCH	A375_MHC_IP_R2	2		2	557.32238	1112.63021	-0.70412	-0.00039242	-0.12627	-7.0373E-05	-0.83039	-0.00046279	557.3221815984085	27.278	0.25487	27.956	27.843	28.098	0.67857	-0.010958	-0.0001685	NaN	10.074	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1933100	+		8266	21983	5934	5984							0.07839621628886562
EEAKRVLRY	9	Unmodified	_EEAKRVLRY_					0	0	0		nc|ENSG00000159363|Q9NQ11-2|ATP13A2;nc|ENSG00000159363|Q9NQ11-3|ATP13A2	nc|ENSG00000159363|Q9NQ11-2|ATP13A2	nc|ENSG00000159363|Q9NQ11-2|ATP13A2	MULTI-MSMS	A375_MHC_IP_R1	1	388.9560852050781	3	388.555895	1162.64586	0.28781	0.00011183	-0.37803	-0.00014689	-0.090223	-3.5057E-05	388.55569305515843	20.379	0.45753	20.379	20.129	20.587	0					20	8	4	0	0	0	0.70902	1	5206	5206		6.1918	0.40842	1	2226100			8267	14703	5935	5985	8029	8029					0.07103908145927562
EEAKYDKSL	9	Unmodified	_EEAKYDKSL_					0	0	0			REV__ENSG00000174238|ENST00000313486|PITPNA	REV__ENSG00000174238|ENST00000313486|PITPNA	MULTI-SECPEP	A375_MHC_IP_R2	2	541.2074584960938	2	541.771854	1081.52915	-0.90175	-0.00048854	-1.3683	-0.0007413	-2.27	-0.0012298	542.2732535582663	80.722	0.30721	81.467	81.315	81.622	0.74474					7	5	2	0	0	0	0.65246	1	30614	30614		6.7232	0	1	1521600	+		8268	21276	5936	5986	8030	8030					-0.0083487486449485
EEAKYINRL	9	Unmodified	_EEAKYINRL_					0	0	0			REV__nc|ENSG00000135439|Q99490|AGAP2	REV__nc|ENSG00000135439|Q99490|AGAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	378.584228515625	3	379.208384	1134.60332	-0.10978	-4.1628E-05	0.056344	2.1366E-05	-0.053432	-2.0262E-05	379.2083262796908	29.227	0.35573	29.227	29.047	29.403	0					10	6	2	0	0	0	0.74169	1	9040	9040		4.5289	0	1	5250500	+		8269	18853	5937	5987	8031	8031					0.04140513017705416
EEALCYVCY	9	Unmodified	_EEALCYVCY_					0	0	0			REV__nc|ENSG00000173011|Q86TJ2-2|TADA2B	REV__nc|ENSG00000173011|Q86TJ2-2|TADA2B	MSMS	A375_MHC_IP_R1	1	546.7265014648438	2	546.722461	1091.43037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.564	1	76.564	76.064	77.064	0								0	0	0	0.15486	1	27912	27912		13.508	0.97634	1		+		8270	27364	5938	5988	8032	8032					-0.1116893742537286
EEALEYQKL	9	Unmodified	_EEALEYQKL_					0	0	0			REV__ENSG00000139865|ENST00000553443|TTC6	REV__ENSG00000139865|ENST00000553443|TTC6	MULTI-SECPEP	A375_MHC_IP_R2	2	562.1749267578125	2	561.787504	1121.56045	-0.44569	-0.00025038	-0.30597	-0.00017189	-0.75166	-0.00042227	562.790063530586	43.296	0.30405	44.069	43.826	44.13	0.7724					10	5	3	0	0	0	0.59614	1	16098	16098		30.637	0	1	1253500	+		8271	19183	5939	5989	8033	8033					0.0045369816962193
EEALHASHGF	10	Unmodified	_EEALHASHGF_					0	0	0		ENSG00000186010|ENST00000507754|NDUFA13;nc|ENSG00000186010|Q9P0J0-2|NDUFA13;ENST00000586674.1_1_19:19627047-19643527:+|nuORF	ENSG00000186010|ENST00000507754|NDUFA13	ENSG00000186010|ENST00000507754|NDUFA13	MULTI-MSMS	A375_MHC_IP_R1	1	366.4360046386719	3	366.505201	1096.49377	-0.067369	-2.4691E-05	0.11171	4.0943E-05	0.044342	1.6252E-05	366.50525735411964	26.093	0.55706	26.093	25.917	26.474	0					26	10	3	0	0	0	0.55789	1	7814	7814		15.739	9.0155	1	21510000			8272	8715	5940	5990	8034	8034					-0.05061492601635109
EEALHASHGF	10	Unmodified	_EEALHASHGF_					0	0	0		ENSG00000186010|ENST00000507754|NDUFA13;nc|ENSG00000186010|Q9P0J0-2|NDUFA13;ENST00000586674.1_1_19:19627047-19643527:+|nuORF	ENSG00000186010|ENST00000507754|NDUFA13	ENSG00000186010|ENST00000507754|NDUFA13	MULTI-SECPEP	A375_MHC_IP_R1	1	549.653564453125	2	549.254163	1096.49377	-0.8521	-0.00046802	-0.069743	-3.8307E-05	-0.92184	-0.00050633	549.2541039674319	26.093	0.50684	26.093	25.917	26.423	0					21	9	3	0	0	0	0.00026118	1	7727	7727		189.78	145.92	1	20469000			8273	8715	5940	5990	8035	8035					-0.05061492601635109
EEALHASHGF	10	Unmodified	_EEALHASHGF_					0	0	0		ENSG00000186010|ENST00000507754|NDUFA13;nc|ENSG00000186010|Q9P0J0-2|NDUFA13;ENST00000586674.1_1_19:19627047-19643527:+|nuORF	ENSG00000186010|ENST00000507754|NDUFA13	ENSG00000186010|ENST00000507754|NDUFA13	MULTI-MSMS	A375_MHC_IP_R2	2	366.4358215332031	3	366.505201	1096.49377	-0.33739	-0.00012366	0.3978	0.0001458	0.060405	2.2139E-05	366.5053130005091	25.459	0.55915	26.103	25.924	26.483	0.64368					30	10	4	0	0	0	0.70496	1	8630	8630		8.9762	6.4778	1	20233000			8274	8715	5940	5990	8036	8036					-0.05061492601635109
EEALIEQRRI	10	Unmodified	_EEALIEQRRI_					0	0	0		ENST00000463634.6_1_6:4041126-4056780:+|nuORF;ENSG00000112739|ENST00000337659|PRPF4B;ENST00000380194.3_1_9:117609392-117609554:+|nuORF;ENST00000490399.5_1_6:4041126-4044298:+|nuORF	ENST00000463634.6_1_6:4041126-4056780:+|nuORF	ENST00000463634.6_1_6:4041126-4056780:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	419.95556640625	3	419.570093	1255.68845	-0.11583	-4.8599E-05	-0.28628	-0.00012011	-0.40211	-0.00016871	419.56994910499924	36.82	0.45331	36.82	36.592	37.045	0					19	8	3	0	0	0	0.38461	2	12333	12333;12367		35.08	19.541	1	9448700			8275	3108	5941	5991	8037;8038	8037					0.07083258483521604
EEALIEQRRI	10	Unmodified	_EEALIEQRRI_					0	0	0		ENST00000463634.6_1_6:4041126-4056780:+|nuORF;ENSG00000112739|ENST00000337659|PRPF4B;ENST00000380194.3_1_9:117609392-117609554:+|nuORF;ENST00000490399.5_1_6:4041126-4044298:+|nuORF	ENST00000463634.6_1_6:4041126-4056780:+|nuORF	ENST00000463634.6_1_6:4041126-4056780:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	419.9554138183594	3	419.570093	1255.68845	-0.21945	-9.2074E-05	-0.44692	-0.00018751	-0.66637	-0.00027959	419.5699113113725	36.003	0.56171	36.766	36.486	37.048	0.76338					18	10	2	0	0	0	0.48194	2	13058	13058;13074		29.281	13.007	1	9220900			8276	3108	5941	5991	8039;8040	8039					0.07083258483521604
EEALILDNKY	10	Unmodified	_EEALILDNKY_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	A375_MHC_IP_R1	1	604.7136840820312	2	604.313886	1206.61322	-0.48307	-0.00029193	0.88092	0.00053235	0.39785	0.00024042	604.3147794293084	65.633	0.91457	65.633	65.36	66.275	0					35	17	3	0	0	0	3.3034E-05	1	23753	23753		168.54	102.08	1	8401900			8277	9183	5942	5992	8041	8041					0.018176562324242695
EEALILDNKY	10	Unmodified	_EEALILDNKY_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	A375_MHC_IP_R2	2	604.7135620117188	2	604.313886	1206.61322	-0.4777	-0.00028868	0.87763	0.00053036	0.39993	0.00024168	604.3145981104468	64.941	0.76163	65.679	65.41	66.172	0.73812					40	14	4	0	0	0	3.2492E-05	1	24609	24609		181.69	105.93	1	7068400			8278	9183	5942	5992	8042	8042					0.018176562324242695
EEALKHLASKQ	11	Unmodified	_EEALKHLASKQ_					0	0	0			REV__UTRN|p.P962S|1|0.16|ENSG00000152818|chr6:144462684-144462684|C/T|missense_variant	REV__UTRN|p.P962S|1|0.16|ENSG00000152818|chr6:144462684-144462684|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	418.2785339355469	3	418.56646	1252.67755	0.11597	4.854E-05	0.018192	7.6144E-06	0.13416	5.6155E-05	418.56639937898586	34.583	0.50711	34.583	34.303	34.81	0					30	9	4	0	0	0	0.98968	1	11307	11307		9.7643	5.6476	1	26204000	+		8279	28974	5943	5993	8043	8043					0.06131856109232103
EEALKYIGF	9	Unmodified	_EEALKYIGF_					0	0	0		ENST00000485979.1_1_3:107937380-107938376:-|nuORF;ENST00000465024.1_1_3:107932768-107941190:-|nuORF;ENSG00000114446|ENST00000264538|IFT57	ENST00000485979.1_1_3:107937380-107938376:-|nuORF	ENST00000485979.1_1_3:107937380-107938376:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	535.6814575195312	2	535.281857	1068.54916	-0.73958	-0.00039588	-0.088206	-4.7215E-05	-0.82779	-0.0004431	535.7836217926393	89.588	0.66413	90.32	90.035	90.699	0.7318					26	12	3	0	0	0	0.11436	1	34095	34095		49.933	24.534	1	2058700			8280	3222	5944	5994	8044	8044					0.01762920866121931
EEALKYIGF	9	Unmodified	_EEALKYIGF_					0	0	0		ENST00000485979.1_1_3:107937380-107938376:-|nuORF;ENST00000465024.1_1_3:107932768-107941190:-|nuORF;ENSG00000114446|ENST00000264538|IFT57	ENST00000485979.1_1_3:107937380-107938376:-|nuORF	ENST00000485979.1_1_3:107937380-107938376:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	535.281857	1068.54916	-0.88017	-0.00047114	0.68418	0.00036623	-0.19599	-0.00010491	535.2818378213151	90.292	0.81248	90.292	89.981	90.794	0	-0.013547	0.00035455	NaN	49.933	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2158800			8281	3222	5944	5994							0.01762920866121931
EEALLFKRL	9	Unmodified	_EEALLFKRL_					0	0	0		nc|ENSG00000064933|P54277-3|PMS1;ENSG00000064933|ENST00000441310|PMS1	nc|ENSG00000064933|P54277-3|PMS1	nc|ENSG00000064933|P54277-3|PMS1	MULTI-MSMS	A375_MHC_IP_R1	1	373.95721435546875	3	373.557125	1117.64954	0.1821	6.8026E-05	0.44799	0.00016735	0.63009	0.00023538	373.55727256642444	65.896	0.55696	65.896	65.616	66.173	0					14	10	2	0	0	0	0.73141	1	23874	23874		4.1895	1.4543	1	2197000			8282	14471	5945	5995	8045	8045					0.09542577919796713
EEALLFKRL	9	Unmodified	_EEALLFKRL_					0	0	0		nc|ENSG00000064933|P54277-3|PMS1;ENSG00000064933|ENST00000441310|PMS1	nc|ENSG00000064933|P54277-3|PMS1	nc|ENSG00000064933|P54277-3|PMS1	MULTI-SECPEP	A375_MHC_IP_R2	2	373.9568176269531	3	373.557125	1117.64954	0.3808	0.00014225	-0.59964	-0.000224	-0.21885	-8.1753E-05	373.55681387505206	64.877	0.3557	65.615	65.41	65.766	0.73811					11	6	2	0	0	0	0.79713	1	24643	24643		6.6304	3.8952	1	1277300			8283	14471	5945	5995	8046	8046					0.09542577919796713
EEALRKMEL	9	Unmodified	_EEALRKMEL_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	A375_MHC_IP_R1	1	559.1704711914062	2	559.797349	1117.58014	-0.91054	-0.00050972	-4.2596	-0.0023845	-5.1701	-0.0028942	560.2945364382133	68.008	0.3549	68.008	67.854	68.209	0					9	6	2	0	0	0	0.58271	1	24639	24639		26.884	2.2098	1	417030	+		8284	21096	5946	5996	8047	8047					0.026057509087195285
EEAMHVRHN	9	Unmodified	_EEAMHVRHN_					0	0	0			REV__nc|ENSG00000188785|Q8NEK5|ZNF548	REV__nc|ENSG00000188785|Q8NEK5|ZNF548	MSMS	A375_MHC_IP_R2	2	561.7115478515625	2	561.759089	1121.50363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.156	1	66.894	66.394	67.394	0.73811								0	0	0	0.15486	1	25074	25074		12.532	0.89125	1		+		8285	22113	5947	5997	8048	8048					-0.05226627867887146
EEANYWKDL	9	Unmodified	_EEANYWKDL_					0	0	0		ENSG00000072864|ENST00000396354|NDE1;nc|ENSG00000072864|Q9NXR1-1|NDE1	ENSG00000072864|ENST00000396354|NDE1	ENSG00000072864|ENST00000396354|NDE1	MULTI-SECPEP	A375_MHC_IP_R1	1	584.6690063476562	2	584.269478	1166.5244	-0.13677	-7.9909E-05	-0.3473	-0.00020292	-0.48407	-0.00028283	584.770900448929	70.441	0.46229	70.441	70.185	70.648	0					11	8	2	0	0	0	0.23894	1	25625	25625		40.239	19.825	1	1043000			8286	1552	5948	5998	8049	8049					-0.052197590072410094
EEANYWKDL	9	Unmodified	_EEANYWKDL_					0	0	0		ENSG00000072864|ENST00000396354|NDE1;nc|ENSG00000072864|Q9NXR1-1|NDE1	ENSG00000072864|ENST00000396354|NDE1	ENSG00000072864|ENST00000396354|NDE1	MULTI-MATCH	A375_MHC_IP_R2	2		2	584.269478	1166.5244	-0.37713	-0.00022035	0.38212	0.00022326	0.0049903	2.9157E-06	584.2695965259794	69.882	0.40669	70.616	70.386	70.793	0.73421	0.08782	0.00057751	NaN	33.445	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	799970			8287	1552	5948	5998							-0.052197590072410094
EEAPCQDAT	9	Unmodified	_EEAPCQDAT_					0	0	0			REV__ENSG00000141642|ENST00000269466|ELAC1	REV__ENSG00000141642|ENST00000269466|ELAC1	MSMS	A375_MHC_IP_R1	1	482.16314697265625	2	482.189839	962.365126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.061	1	88.061	87.561	88.561	0								0	0	0	0.15486	1	32322	32322		7.9102	2.1497	1		+		8288	19283	5949	5999	8050	8050					-0.11756215626894573
EEAPDIPLRRV	11	Unmodified	_EEAPDIPLRRV_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	A375_MHC_IP_R2	2	432.6416931152344	3	432.241976	1293.7041	-0.089895	-3.8856E-05	0.044619	1.9286E-05	-0.045275	-1.957E-05	432.2419134973245	47.551	0.55846	48.312	48.073	48.632	0.76128					15	10	2	0	0	0	0.4957	1	17883	17883		31.462	16.624	1	3237700			8289	2486	5950	6000	8051	8051					0.0689954500053318
EEAPDIPLRRV	11	Unmodified	_EEAPDIPLRRV_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MATCH	A375_MHC_IP_R1	1		3	432.241976	1293.7041	0.21818	9.4306E-05	0.58169	0.00025143	0.79987	0.00034574	432.24234094714745	48.31	1.0128	48.31	48.071	49.084	0	-0.0011969	0.00059272	NaN	31.462	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2175900			8290	2486	5950	6000							0.0689954500053318
EEAPDYMYL	9	Oxidation (M)	_EEAPDYM(Oxidation (M))YL_		EEAPDYM(1)YL		EEAPDYM(42)YL	0	0	1		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	MSMS	A375_MHC_IP_R2	2	573.552734375	2	573.736622	1145.45869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.354	1	79.098	78.598	79.598	0.74437								0	0	0	0.099728	1	29754	29754		42.095	23.948	1				8291	3174	5951	6001	8052	8052		150			-0.10821916244458407
EEAPFSRRF	9	Unmodified	_EEAPFSRRF_					0	0	0		PPP1R12C|p.I471Lfs*93|1|0.26|ENSG00000125503|chr19:55095334-55095334|T/-|frameshift_variant;nc|ENSG00000125503|Q9BZL4-5|PPP1R12C;nc|ENSG00000125503|Q9BZL4-2|PPP1R12C;nc|ENSG00000125503|Q9BZL4-3|PPP1R12C;nc|ENSG00000125503|Q9BZL4-4|PPP1R12C;ENSG00000125503|ENST00000263433|PPP1R12C	PPP1R12C|p.I471Lfs*93|1|0.26|ENSG00000125503|chr19:55095334-55095334|T/-|frameshift_variant	PPP1R12C|p.I471Lfs*93|1|0.26|ENSG00000125503|chr19:55095334-55095334|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	380.59283447265625	3	380.192845	1137.55671	-0.044011	-1.6733E-05	0.074353	2.8269E-05	0.030342	1.1536E-05	380.1928930102703	38.206	0.4595	38.206	37.964	38.423	0					17	8	3	0	0	0	0.31606	1	12959	12959		30.703	30.703	1	5949600			8292	3970	5952	6002	8053	8053					-0.0065692681357631955
EEAPFSRRF	9	Unmodified	_EEAPFSRRF_					0	0	0		PPP1R12C|p.I471Lfs*93|1|0.26|ENSG00000125503|chr19:55095334-55095334|T/-|frameshift_variant;nc|ENSG00000125503|Q9BZL4-5|PPP1R12C;nc|ENSG00000125503|Q9BZL4-2|PPP1R12C;nc|ENSG00000125503|Q9BZL4-3|PPP1R12C;nc|ENSG00000125503|Q9BZL4-4|PPP1R12C;ENSG00000125503|ENST00000263433|PPP1R12C	PPP1R12C|p.I471Lfs*93|1|0.26|ENSG00000125503|chr19:55095334-55095334|T/-|frameshift_variant	PPP1R12C|p.I471Lfs*93|1|0.26|ENSG00000125503|chr19:55095334-55095334|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	380.5927429199219	3	380.192845	1137.55671	-0.40926	-0.0001556	0.15545	5.9102E-05	-0.25381	-9.6497E-05	380.1929230766333	37.383	0.46094	38.154	37.917	38.378	0.7709					17	8	3	0	0	0	0.14572	1	13681	13681		42.312	42.312	1	3588400			8293	3970	5952	6002	8054	8054					-0.0065692681357631955
EEAPKFLAF	9	Unmodified	_EEAPKFLAF_					0	0	0		ENSG00000007255|ENST00000585934|TRAPPC6A;nc|ENSG00000007255|O75865-2|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	MULTI-SECPEP	A375_MHC_IP_R1	1	526.6766967773438	2	526.276575	1050.5386	-0.49841	-0.0002623	0.97718	0.00051426	0.47877	0.00025197	526.2771858283395	93.925	1.9333	93.925	93.023	94.956	0					74	37	3	0	0	0	0.04038	1	34557	34557		96.111	60.067	1	13304000			8294	940	5953	6003	8055	8055					0.015349382117165078
EEAPKVFKM	9	Unmodified	_EEAPKVFKM_					0	0	0		nc|ENSG00000171204|Q8IUX1-2|TMEM126B;ENSG00000171204|ENST00000358867|TMEM126B;nc|ENSG00000171204|Q8IUX1-4|TMEM126B	nc|ENSG00000171204|Q8IUX1-2|TMEM126B	nc|ENSG00000171204|Q8IUX1-2|TMEM126B	MULTI-SECPEP	A375_MHC_IP_R1	1	360.60791015625	3	360.191565	1077.55287	0.23258	8.3774E-05	-1.1425	-0.00041151	-0.9099	-0.00032774	360.19105560024997	40.625	0.50782	40.625	40.355	40.863	0					13	9	2	0	0	0	0.65527	1	13986	13986		16.566	15.111	1	2195300			8295	7580	5954	6004	8056	8056					0.017192673683439352
EEAPKVFKM	9	Unmodified	_EEAPKVFKM_					0	0	0		nc|ENSG00000171204|Q8IUX1-2|TMEM126B;ENSG00000171204|ENST00000358867|TMEM126B;nc|ENSG00000171204|Q8IUX1-4|TMEM126B	nc|ENSG00000171204|Q8IUX1-2|TMEM126B	nc|ENSG00000171204|Q8IUX1-2|TMEM126B	MULTI-MSMS	A375_MHC_IP_R2	2	360.0977783203125	3	360.191565	1077.55287	-0.24181	-8.7097E-05	1.0106	0.00036401	0.76878	0.00027691	360.19145994210095	39.844	0.35536	40.619	40.422	40.777	0.77451					16	6	4	0	0	0	0.61998	1	14734	14734		9.544	2.4423	1	1991400			8296	7580	5954	6004	8057	8057					0.017192673683439352
EEAPPATQNF	10	Unmodified	_EEAPPATQNF_					0	0	0		nc|ENSG00000119383|Q15257-4|PTPA;nc|ENSG00000119383|Q15257-3|PTPA;ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257|PTPA	nc|ENSG00000119383|Q15257-4|PTPA	nc|ENSG00000119383|Q15257-4|PTPA	MULTI-SECPEP	A375_MHC_IP_R1	1	552.6533813476562	2	552.253828	1102.4931	-0.53602	-0.00029602	-0.15313	-8.4566E-05	-0.68915	-0.00038058	552.7550281869435	47.418	0.81672	47.418	46.952	47.768	0					23	15	2	0	0	0	0.24808	1	16664	16664		55.503	39.656	1	2982100			8297	3586	5955	6005	8058	8058					-0.05404332041325688
EEAPPATQNF	10	Unmodified	_EEAPPATQNF_					0	0	0		nc|ENSG00000119383|Q15257-4|PTPA;nc|ENSG00000119383|Q15257-3|PTPA;ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257|PTPA	nc|ENSG00000119383|Q15257-4|PTPA	nc|ENSG00000119383|Q15257-4|PTPA	MULTI-SECPEP	A375_MHC_IP_R2	2	552.6209106445312	2	552.253828	1102.4931	-0.59666	-0.00032951	-0.94678	-0.00052286	-1.5434	-0.00085237	552.7548493192821	46.843	0.50821	47.604	47.258	47.766	0.76128					24	9	3	0	0	0	0.19943	1	17529	17529		51.63	34.517	1	2647500			8298	3586	5955	6005	8059	8059					-0.05404332041325688
EEAPPPPLL	9	Unmodified	_EEAPPPPLL_					0	0	0		nc|ENSG00000111880|O60942-3|RNGTT;nc|ENSG00000111880|O60942-2|RNGTT;nc|ENSG00000111880|O60942-4|RNGTT;ENSG00000111880|ENST00000369485|RNGTT	nc|ENSG00000111880|O60942-3|RNGTT	nc|ENSG00000111880|O60942-3|RNGTT	MULTI-SECPEP	A375_MHC_IP_R1	1	482.13653564453125	2	481.7633	961.512048	-0.32101	-0.00015465	-0.21648	-0.00010429	-0.53749	-0.00025894	481.7632911287051	88.18	0.86629	88.18	87.644	88.51	0					29	16	2	0	0	0	0.01105	1	32305	32305		129.2	68.811	1	2290000			8299	14546	5956	6006	8060	8060					0.029752493203773156
EEAPPPPLL	9	Unmodified	_EEAPPPPLL_					0	0	0		nc|ENSG00000111880|O60942-3|RNGTT;nc|ENSG00000111880|O60942-2|RNGTT;nc|ENSG00000111880|O60942-4|RNGTT;ENSG00000111880|ENST00000369485|RNGTT	nc|ENSG00000111880|O60942-3|RNGTT	nc|ENSG00000111880|O60942-3|RNGTT	MULTI-SECPEP	A375_MHC_IP_R2	2	482.16278076171875	2	481.7633	961.512048	-0.46987	-0.00022637	0.15553	7.4929E-05	-0.31434	-0.00015144	481.76338061445784	87.281	0.75658	88.014	87.662	88.419	0.733					23	14	2	0	0	0	0.011416	1	33214	33214		114.94	54.554	1	2780000			8300	14546	5956	6006	8061	8061					0.029752493203773156
EEAPQAAKL	9	Unmodified	_EEAPQAAKL_					0	0	0		nc|ENSG00000176058|Q4KMQ1-2|TPRN;nc|ENSG00000176058|Q4KMQ1-4|TPRN;nc|ENSG00000176058|Q4KMQ1-3|TPRN;ENSG00000176058|ENST00000409012|TPRN	nc|ENSG00000176058|Q4KMQ1-2|TPRN	nc|ENSG00000176058|Q4KMQ1-2|TPRN	MULTI-SECPEP	A375_MHC_IP_R1	1	479.15557861328125	2	478.756007	955.497461	-0.65817	-0.0003151	-0.016398	-7.8505E-06	-0.67457	-0.00032295	478.7559761931812	27.891	0.45415	27.891	27.684	28.138	0					14	8	2	0	0	0	0.16676	1	8546	8546		49.933	13.889	1	4411000			8301	7998	5957	6007	8062	8062					0.017931771722260237
EEAPRRRVP	9	Unmodified	_EEAPRRRVP_					0	0	0			REV__ENSG00000049769|ENST00000055335|PPP1R3F	REV__ENSG00000049769|ENST00000055335|PPP1R3F	MSMS	A375_MHC_IP_R1	1	370.5923156738281	3	370.54399	1108.61014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.662	1	26.662	26.162	27.162	0								0	0	0	0.15486	1	7974	7974		4.897	2.1618	1		+		8302	16382	5958	6008	8063	8063					0.06017870688947369
EEAPSQQGF	9	Unmodified	_EEAPSQQGF_					0	0	0		nc|ENSG00000188785|Q8NEK5|ZNF548;ENSG00000188785|ENST00000336128|ZNF548	nc|ENSG00000188785|Q8NEK5|ZNF548	nc|ENSG00000188785|Q8NEK5|ZNF548	MULTI-MSMS	A375_MHC_IP_R1	1	496.66021728515625	2	496.719621	991.42469	-0.37755	-0.00018754	0.39859	0.00019799	0.021032	1.0447E-05	496.7197743090819	37.105	0.96375	37.105	36.592	37.556	0					34	18	2	0	0	0	0.0011619	2	12448	12448;12599		166.45	114.18	1	19507000			8303	8936	5959	6009	8064;8065	8064					-0.07136576621178392
EEAPSQQGF	9	Unmodified	_EEAPSQQGF_					0	0	0		nc|ENSG00000188785|Q8NEK5|ZNF548;ENSG00000188785|ENST00000336128|ZNF548	nc|ENSG00000188785|Q8NEK5|ZNF548	nc|ENSG00000188785|Q8NEK5|ZNF548	MULTI-MSMS	A375_MHC_IP_R2	2	496.65972900390625	2	496.719621	991.42469	-0.76257	-0.00037878	0.50328	0.00024999	-0.25929	-0.00012879	496.71978632472633	36.461	1.0699	37.232	36.646	37.716	0.7709					39	20	2	0	0	0	0.012843	3	13211	13193;13211;13456		92.653	61.385	1	27881000			8304	8936	5959	6009	8066;8067;8068	8067					-0.07136576621178392
EEAPSRPAL	9	Unmodified	_EEAPSRPAL_					0	0	0		nc|ENSG00000173349|Q587I9|SFT2D3	nc|ENSG00000173349|Q587I9|SFT2D3	nc|ENSG00000173349|Q587I9|SFT2D3	MULTI-MSMS	A375_MHC_IP_R1	1	485.6534729003906	2	485.253631	968.49271	-0.57723	-0.0002801	-0.0067695	-3.2849E-06	-0.584	-0.00028339	485.25360235088044	30.578	0.65741	30.578	30.351	31.009	0					31	12	3	0	0	0	0.0096896	2	9713	9713;9804		110.67	31.947	1	19310000			8305	14769	5960	6010	8069;8070	8069					0.007202930294738508
EEAPSRPAL	9	Unmodified	_EEAPSRPAL_					0	0	0		nc|ENSG00000173349|Q587I9|SFT2D3	nc|ENSG00000173349|Q587I9|SFT2D3	nc|ENSG00000173349|Q587I9|SFT2D3	MULTI-MSMS	A375_MHC_IP_R2	2	485.6531982421875	2	485.253631	968.49271	-0.879	-0.00042654	0.21378	0.00010374	-0.66522	-0.0003228	485.25367635774916	29.868	0.86125	30.566	30.385	31.246	0.69872					36	16	3	0	0	0	0.0096896	1	10468	10468		110.67	31.947	1	17333000			8306	14769	5960	6010	8071	8071					0.007202930294738508
EEAPVSSHSF	10	Unmodified	_EEAPVSSHSF_					0	0	0		ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-7|USP54;nc|ENSG00000166348|Q70EL1-10|USP54;nc|ENSG00000166348|Q70EL1-8|USP54	ENSG00000166348|ENST00000687698|USP54	ENSG00000166348|ENST00000687698|USP54	MULTI-MSMS	A375_MHC_IP_R2	2	545.7014770507812	2	545.246003	1088.47745	-0.91504	-0.00049892	-0.41663	-0.00022717	-1.3317	-0.00072609	545.2459572818595	33.011	0.25574	33.748	33.62	33.876	0.73692					7	4	2	0	0	0	0.27246	1	11808	11808		41.84	16.44	1	1803400			8307	7064	5961	6011	8072	8072					-0.06324618558369366
EEAQAEIEQYR	11	Unmodified	_EEAQAEIEQYR_					0	0	0		ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	MULTI-MSMS	A375_MHC_IP_R1	1	456.61474609375	3	455.880884	1364.62082	-0.35272	-0.0001608	-0.0033624	-1.5328E-06	-0.35608	-0.00016233	455.8808129197685	23.243	0.96488	23.243	22.924	23.889	0					42	18	4	0	0	0	0.65093	1	6317	6317		11.631	5.0079	1	29799000			8308	4838	5962	6012	8073	8073					-0.04690236237956924
EEAQAEIEQYR	11	Unmodified	_EEAQAEIEQYR_					0	0	0		ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	455.880884	1364.62082	-0.35272	-0.0001608	-0.0033624	-1.5328E-06	-0.35608	-0.00016233	455.8808129197685	23.243	0.96488	23.243	22.924	23.889	0	0	0	NaN	11.631	42	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29799000			8309	4838	5962	6012							-0.04690236237956924
EEAQFETKKLY	11	Unmodified	_EEAQFETKKLY_					0	0	0		ENSG00000183291|ENST00000331835|SELENOF;ENST00000467557.1_1_1:87346375-87379497:-|nuORF;ENST00000331835.9_2_1:87346375-87379803:-|nuORF;nc|ENSG00000183291|O60613-2|SELENOF	ENSG00000183291|ENST00000331835|SELENOF	ENSG00000183291|ENST00000331835|SELENOF	MULTI-MSMS	A375_MHC_IP_R2	2	462.9696044921875	3	462.569759	1384.68745	-0.77785	-0.00035981	0.34182	0.00015812	-0.43603	-0.00020169	462.56987373321334	37.633	0.92331	38.407	38.124	39.047	0.77451					43	17	4	0	0	0	0.056403	1	13765	13765		78.116	55.1	1	34084000			8310	8481	5963	6013	8074	8074					0.010489993239616524
EEAQFETKKLY	11	Unmodified	_EEAQFETKKLY_					0	0	0		ENSG00000183291|ENST00000331835|SELENOF;ENST00000467557.1_1_1:87346375-87379497:-|nuORF;ENST00000331835.9_2_1:87346375-87379803:-|nuORF;nc|ENSG00000183291|O60613-2|SELENOF	ENSG00000183291|ENST00000331835|SELENOF	ENSG00000183291|ENST00000331835|SELENOF	MULTI-MSMS	A375_MHC_IP_R2	2	693.7504272460938	2	693.351	1384.68745	-0.93629	-0.00064917	0.32895	0.00022808	-0.60734	-0.0004211	693.3511307398413	37.633	0.41	38.407	38.175	38.585	0.77451					21	7	4	0	0	0	4.708E-13	1	13772	13772		206.84	178.34	1	13252000			8311	8481	5963	6013	8075	8075					0.010489993239616524
EEAQFETKKLY	11	Unmodified	_EEAQFETKKLY_					0	0	0		ENSG00000183291|ENST00000331835|SELENOF;ENST00000467557.1_1_1:87346375-87379497:-|nuORF;ENST00000331835.9_2_1:87346375-87379803:-|nuORF;nc|ENSG00000183291|O60613-2|SELENOF	ENSG00000183291|ENST00000331835|SELENOF	ENSG00000183291|ENST00000331835|SELENOF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	693.351	1384.68745	-0.93017	-0.00064493	0.66426	0.00046057	-0.2659	-0.00018436	693.3514463357482	38.345	0.50996	38.345	38.118	38.628	0	-0.031007	0.0001411	NaN	206.84	22	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12093000			8312	8481	5963	6013							0.010489993239616524
EEAQIFQRI	9	Unmodified	_EEAQIFQRI_					0	0	0		ENSG00000132357|ENST00000254691|CARD6	ENSG00000132357|ENST00000254691|CARD6	ENSG00000132357|ENST00000254691|CARD6	MULTI-SECPEP	A375_MHC_IP_R1	1	567.7005615234375	2	567.301113	1132.58767	-0.76629	-0.00043472	0.3844	0.00021807	-0.38189	-0.00021664	567.3013214635956	67.953	0.55535	67.953	67.654	68.209	0					16	10	2	0	0	0	0.011321	1	24630	24630		111.29	69.447	1	2477100			8313	4397	5964	6014	8076	8076					0.026682265006684247
EEAQIFQRI	9	Unmodified	_EEAQIFQRI_					0	0	0		ENSG00000132357|ENST00000254691|CARD6	ENSG00000132357|ENST00000254691|CARD6	ENSG00000132357|ENST00000254691|CARD6	MULTI-SECPEP	A375_MHC_IP_R2	2	567.7007446289062	2	567.301113	1132.58767	-0.41907	-0.00023774	-0.25973	-0.00014735	-0.6788	-0.00038509	567.3009846960018	67.118	0.6091	67.855	67.546	68.155	0.73631					18	11	2	0	0	0	0.016309	1	25443	25443		103.35	80.617	1	2318700			8314	4397	5964	6014	8077	8077					0.026682265006684247
EEAQIIQRRL	10	Unmodified	_EEAQIIQRRL_					0	0	0		ENSG00000132467|ENST00000254803|UTP3	ENSG00000132467|ENST00000254803|UTP3	ENSG00000132467|ENST00000254803|UTP3	MULTI-MSMS	A375_MHC_IP_R1	1	419.6419677734375	3	419.242088	1254.70443	0.24854	0.0001042	-0.71201	-0.0002985	-0.46347	-0.00019431	419.24182207379135	35.896	0.96767	35.896	35.573	36.541	0					62	18	6	0	0	0	0.11193	1	11959	11959		61.09	40.509	1	47520000			8315	4412	5965	6015	8078	8078					0.08726964720426622
EEAQIIQRRL	10	Unmodified	_EEAQIIQRRL_					0	0	0		ENSG00000132467|ENST00000254803|UTP3	ENSG00000132467|ENST00000254803|UTP3	ENSG00000132467|ENST00000254803|UTP3	MULTI-MSMS	A375_MHC_IP_R1	1	628.7592163085938	2	628.359493	1254.70443	-0.4759	-0.00029904	-0.18139	-0.00011398	-0.6573	-0.00041302	628.3594009515967	35.907	0.50789	35.907	35.676	36.184	0					20	9	3	0	0	0	0.40573	1	11981	11981		45.74	20.749	1	8755500			8316	4412	5965	6015	8079	8079					0.08726964720426622
EEAQIIQRRL	10	Unmodified	_EEAQIIQRRL_					0	0	0		ENSG00000132467|ENST00000254803|UTP3	ENSG00000132467|ENST00000254803|UTP3	ENSG00000132467|ENST00000254803|UTP3	MULTI-MSMS	A375_MHC_IP_R2	2	419.6419982910156	3	419.242088	1254.70443	-0.29768	-0.0001248	-0.14738	-6.1787E-05	-0.44506	-0.00018659	419.2419843993334	35.04	0.96098	35.804	35.525	36.486	0.76338					36	18	3	0	0	0	0.11193	1	12663	12663		61.09	40.509	1	47768000			8317	4412	5965	6015	8080	8080					0.08726964720426622
EEAQIIQRRL	10	Unmodified	_EEAQIIQRRL_					0	0	0		ENSG00000132467|ENST00000254803|UTP3	ENSG00000132467|ENST00000254803|UTP3	ENSG00000132467|ENST00000254803|UTP3	MULTI-MSMS	A375_MHC_IP_R2	2	628.7590942382812	2	628.359493	1254.70443	-1.0427	-0.0006552	0.3685	0.00023155	-0.67421	-0.00042365	628.3597160365312	35.057	0.40354	35.82	35.627	36.03	0.76338					19	7	3	0	0	0	0.12159	1	12686	12686		67.838	36.57	1	8013500			8318	4412	5965	6015	8081	8081					0.08726964720426622
EEAQPIVTKY	10	Unmodified	_EEAQPIVTKY_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-SECPEP	A375_MHC_IP_R1	1	589.7084350585938	2	589.308603	1176.60265	-0.42642	-0.00025129	0.11504	6.7793E-05	-0.31138	-0.0001835	589.3087730141025	39.543	0.45402	39.543	39.34	39.794	0					20	8	3	0	0	0	0.026141	1	13519	13519		132.22	78.387	1	7965300			8319	9625	5966	6016	8082	8082					0.0214167357801216
EEAQPIVTKY	10	Unmodified	_EEAQPIVTKY_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-SECPEP	A375_MHC_IP_R2	2	588.7294921875	2	589.308603	1176.60265	-0.85107	-0.00050154	0.11127	6.5572E-05	-0.7398	-0.00043597	589.308597251889	38.778	0.40922	39.553	39.351	39.76	0.77451					14	7	2	0	0	0	0.026141	1	14280	14280		121.93	65.753	1	6878300			8320	9625	5966	6016	8083	8083					0.0214167357801216
EEAQVFWAK	9	Unmodified	_EEAQVFWAK_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MSMS	A375_MHC_IP_R1	1	554.2130737304688	2	554.277106	1106.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.995	1	49.995	49.495	50.495	0								0	0	0	0.15411	1	17696	17696		14.838	0.93222	1				8321	5800	5967	6017	8084	8084					-0.009348474193984657
EEAQYQREY	9	Unmodified	_EEAQYQREY_					0	0	0		ENST00000589493.1_1_17:40967924-40970674:-|nuORF;ENSG00000126581|ENST00000590099|BECN1	ENST00000589493.1_1_17:40967924-40970674:-|nuORF	ENST00000589493.1_1_17:40967924-40970674:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	608.6671142578125	2	608.267467	1214.52038	-0.45887	-0.00027912	-0.066972	-4.0737E-05	-0.52585	-0.00031985	608.267344954275	24.489	0.50445	24.489	24.296	24.801	0					17	9	3	0	0	0	0.00039373	1	6963	6963		203.64	110.47	1	10893000			8322	4050	5968	6018	8085	8085					-0.07829848500932712
EEARAFNRI	9	Unmodified	_EEARAFNRI_					0	0	0		PUF60|p.T484Rfs*40|1|0.47|ENSG00000179950|chr8:143816748-143816749|TG/-|frameshift_variant;nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	PUF60|p.T484Rfs*40|1|0.47|ENSG00000179950|chr8:143816748-143816749|TG/-|frameshift_variant	PUF60|p.T484Rfs*40|1|0.47|ENSG00000179950|chr8:143816748-143816749|TG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	369.5960998535156	3	369.196478	1104.56761	0.10545	3.8933E-05	-0.54295	-0.00020045	-0.43749	-0.00016152	369.1962838683794	27.816	0.55415	27.816	27.634	28.188	0					23	10	3	0	0	0	0.53748	1	8533	8533		12.873	6.2422	1	13926000			8323	15256	5969	6019	8086	8086					0.019504755606931212
EEARAFNRI	9	Unmodified	_EEARAFNRI_					0	0	0		PUF60|p.T484Rfs*40|1|0.47|ENSG00000179950|chr8:143816748-143816749|TG/-|frameshift_variant;nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	PUF60|p.T484Rfs*40|1|0.47|ENSG00000179950|chr8:143816748-143816749|TG/-|frameshift_variant	PUF60|p.T484Rfs*40|1|0.47|ENSG00000179950|chr8:143816748-143816749|TG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	369.4444580078125	3	369.196478	1104.56761	0.24158	8.9189E-05	-0.69116	-0.00025517	-0.44958	-0.00016598	369.1962411615603	27.124	0.56158	27.803	27.638	28.2	0.67857					25	10	3	0	0	0	0.3213	1	9225	9225		34.932	21.317	1	12545000			8324	15256	5969	6019	8087	8087					0.019504755606931212
EEARAFNRIY	10	Unmodified	_EEARAFNRIY_					0	0	0		PUF60|p.T484Rfs*40|1|0.47|ENSG00000179950|chr8:143816748-143816749|TG/-|frameshift_variant;nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	PUF60|p.T484Rfs*40|1|0.47|ENSG00000179950|chr8:143816748-143816749|TG/-|frameshift_variant	PUF60|p.T484Rfs*40|1|0.47|ENSG00000179950|chr8:143816748-143816749|TG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	423.9510498046875	3	423.550921	1267.63093	0.017472	7.4005E-06	0.12642	5.3547E-05	0.1439	6.0948E-05	423.5509157162305	37.586	0.35893	37.586	37.402	37.761	0					15	6	3	0	0	0	0.28986	1	12711	12711		40.725	24.159	1	3689900			8325	15256	5970	6020	8088	8088					0.007824162779343169
EEARAFNRIY	10	Unmodified	_EEARAFNRIY_					0	0	0		PUF60|p.T484Rfs*40|1|0.47|ENSG00000179950|chr8:143816748-143816749|TG/-|frameshift_variant;nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	PUF60|p.T484Rfs*40|1|0.47|ENSG00000179950|chr8:143816748-143816749|TG/-|frameshift_variant	PUF60|p.T484Rfs*40|1|0.47|ENSG00000179950|chr8:143816748-143816749|TG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	423.6216735839844	3	423.550921	1267.63093	-0.68597	-0.00029054	-0.0089415	-3.7872E-06	-0.69491	-0.00029433	423.88530611784444	36.79	0.55884	37.561	37.258	37.816	0.7709					22	10	3	0	0	0	0.57453	1	13459	13459		22.775	14.331	1	3110600			8326	15256	5970	6020	8089	8089					0.007824162779343169
EEARFVESN	9	Unmodified	_EEARFVESN_					0	0	0		CFAP53|p.L258F|1|0.43|ENSG00000172361|chr18:50251486-50251486|G/A|missense_variant	CFAP53|p.L258F|1|0.43|ENSG00000172361|chr18:50251486-50251486|G/A|missense_variant	CFAP53|p.L258F|1|0.43|ENSG00000172361|chr18:50251486-50251486|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	541.1868286132812	2	540.751453	1079.48835	-1.2606	-0.00068165	-0.30765	-0.00016636	-1.5682	-0.00084801	540.751265374064	24.898	1.7286	25.542	25.364	27.093	0.64368					61	33	3	0	0	0	0.32092	1	8923	8923		29.082	9.8246	1	37334000			8327	369	5971	6021	8090	8090					-0.04821216184086552
EEARKAHQLW	10	Unmodified	_EEARKAHQLW_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;IMMT|p.L576*|1|0.12|ENSG00000132305|chr2:86144818-86144818|A/-|frameshift_variant	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-SECPEP	A375_MHC_IP_R1	1	423.6228332519531	3	423.222916	1266.64692	-0.16881	-7.1442E-05	0.39104	0.0001655	0.22223	9.4055E-05	423.22297949642837	24.527	0.40342	24.527	24.397	24.801	0					16	7	3	0	0	0	0.77998	1	7020	7020		29.437	15.822	1	5180500			8328	4389	5972	6022	8091	8091					0.02426122514839335
EEARLLVSV	9	Unmodified	_EEARLLVSV_					0	0	0			REV__ENST00000533485.1_1_11:10828352-10828829:-|nuORF	REV__ENST00000533485.1_1_11:10828352-10828829:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.7136535644531	2	508.292756	1014.57096	-0.34752	-0.00017664	-0.7626	-0.00038762	-1.1101	-0.00056427	508.29218257969427	77.858	0.45994	77.858	77.639	78.099	0					11	8	2	0	0	0	0.49205	1	28418	28418		16.149	0	1	1143600	+		8329	25770	5973	6023	8092	8092					0.06425725614712974
EEARLVPTV	9	Unmodified	_EEARLVPTV_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;ENST00000572426.5_1_17:3937307-3974023:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-SECPEP	A375_MHC_IP_R1	1	507.15643310546875	2	507.284931	1012.55531	-0.33205	-0.00016845	-0.51204	-0.00025975	-0.84409	-0.00042819	507.7868081397787	42.158	0.30387	42.158	42.032	42.336	0					8	5	2	0	0	0	0.65246	1	14666	14666		6.7232	0	1	967080			8330	1592	5974	6024	8093	8093					0.04953439097664614
EEARRLLGY	9	Unmodified	_EEARRLLGY_					0	0	0		ENSG00000240682|ENST00000393295|ISY1;nc|ENSG00000240682|Q9ULR0-2|ISY1;ENST00000393292.7_1_3:128848926-128853725:-|nuORF	ENSG00000240682|ENST00000393295|ISY1	ENSG00000240682|ENST00000393295|ISY1	MULTI-SECPEP	A375_MHC_IP_R1	1	554.2139282226562	2	553.80128	1105.58801	-0.22899	-0.00012681	-0.041431	-2.2944E-05	-0.27042	-0.00014976	553.8012504439308	39.059	0.4571	39.059	38.832	39.289	0					20	8	3	0	0	0	0.47368	1	13315	13315		34.102	1.9855	1	7093600			8331	9776	5975	6025	8094	8094					0.03943646220523078
EEASAQSFQEV	11	Unmodified	_EEASAQSFQEV_					0	0	0		ZBBX|p.G272Kfs*3|1|0.43|ENSG00000169064|chr3:167327989-167327990|CC/-|frameshift_variant;ZBBX|p.N273Ifs*15|1|0.44|ENSG00000169064|chr3:167327986-167327987|-/TA|frameshift_variant;nc|ENSG00000169064|A8MT70-3|ZBBX;nc|ENSG00000169064|A8MT70|ZBBX;ENSG00000169064|ENST00000675490|ZBBX	ZBBX|p.G272Kfs*3|1|0.43|ENSG00000169064|chr3:167327989-167327990|CC/-|frameshift_variant	ZBBX|p.G272Kfs*3|1|0.43|ENSG00000169064|chr3:167327989-167327990|CC/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	408.26666259765625	3	408.850814	1223.53061	-0.37906	-0.00015498	-1.4561	-0.00059533	-1.8352	-0.00075031	408.8499626157629	29.864	0.30433	30.563	30.434	30.739	0.69872					7	5	2	0	0	0	0.99411	1	10447	10447		9.7643	5.6476	1	1178600			8332	7377	5976	6026	8095	8095					-0.07221285566402003
EEASFRDQPV	10	Unmodified	_EEASFRDQPV_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B;ENST00000261834.9_1_14:96756535-96777546:-|nuORF	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-SECPEP	A375_MHC_IP_R1	1	589.6773681640625	2	589.277835	1176.54112	-0.38508	-0.00022692	-0.10533	-6.2068E-05	-0.4904	-0.00028898	589.277665307087	52.52	0.76086	52.52	52.136	52.897	0					22	14	2	0	0	0	0.87163	1	18709	18709		9.3831	0	1	4441700			8333	1419	5977	6027	8096	8096					-0.04009258121300263
EEASFRDQPV	10	Unmodified	_EEASFRDQPV_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B;ENST00000261834.9_1_14:96756535-96777546:-|nuORF	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-SECPEP	A375_MHC_IP_R2	2	588.7294921875	2	589.277835	1176.54112	-0.90897	-0.00053564	-0.3382	-0.00019929	-1.2472	-0.00073493	589.7783908541312	38.601	0.40785	39.376	39.2	39.607	0.77451					10	7	2	0	0	0	0.87163	1	14280	14280		19.257	4.4187	1	2267300			8334	1419	5977	6027	8097	8097					-0.04009258121300263
EEASKEIYRYY	11	Unmodified	_EEASKEIYRYY_					0	0	0			REV__nc|ENSG00000156983|P55201-4|BRPF1	REV__nc|ENSG00000156983|P55201-4|BRPF1	MULTI-SECPEP	A375_MHC_IP_R1	1	483.60968017578125	3	484.233146	1449.67761	0.063687	3.084E-05	-2.3684	-0.0011469	-2.3047	-0.001116	484.5662907594238	22.227	0.25452	22.227	22.062	22.317	0					10	4	3	0	0	0	0.99732	1	5945	5945		6.6235	1.5759	1	1235900	+		8335	20004	5978	6028	8098	8098					-0.029241886814133977
EEASLLHQF	9	Unmodified	_EEASLLHQF_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	A375_MHC_IP_R1	1	537.666259765625	2	537.266739	1072.51892	-0.85619	-0.00046	0.42991	0.00023098	-0.42628	-0.00022903	537.2669345827936	68.471	1.5219	68.471	68.057	69.579	0					56	29	2	0	0	0	0.0055718	2	24755	24755;25188		189.78	108.16	1	128660000			8336	3298	5979	6029	8099;8100	8099					-0.014434377990482972
EEASLLHQF	9	Unmodified	_EEASLLHQF_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	A375_MHC_IP_R2	2	537.6660766601562	2	537.266739	1072.51892	-0.83392	-0.00044804	0.19995	0.00010742	-0.63397	-0.00034061	537.2667759851703	67.546	1.88	68.282	67.9	69.78	0.73631					64	36	2	0	0	0	0.0069967	2	25552	25552;25985		166.45	84.835	1	123900000			8337	3298	5979	6029	8101;8102	8101					-0.014434377990482972
EEASQHADV	9	Unmodified	_EEASQHADV_					0	0	0		tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1	tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1	tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1	MSMS	A375_MHC_IP_R2	2	493.20758056640625	2	493.214703	984.414853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.483	1	69.219	68.719	69.719	0.73511								0	0	0	0.15486	1	25951	25951		12.532	2.3482	1				8338	29675	5980	6030	8103	8103					-0.07797764626570824
EEASQHADV	9	Unmodified	_EEASQHADV_					0	0	0		tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1	tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1	tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1	MSMS	A375_MHC_IP_R2	2	493.1847229003906	2	493.214703	984.414853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.304	1	70.038	69.538	70.538	0.73421								0	0	0	0.1521	1	26263	26263		18.135	3.5533	1				8339	29675	5980	6030	8104	8104					-0.07797764626570824
EEATAKHPRY	10	Unmodified	_EEATAKHPRY_					0	0	0			REV__ENSG00000196591|ENST00000519065|HDAC2	REV__ENSG00000196591|ENST00000519065|HDAC2	MULTI-SECPEP	A375_MHC_IP_R2	2	601.701171875	2	601.301644	1200.58874	-0.53871	-0.00032393	-0.55083	-0.00033122	-1.0895	-0.00065514	601.3016979714939	45.396	0.60612	46.161	45.846	46.453	0.76519					25	11	3	0	0	0	0.72086	1	16961	16961		13.042	0	1	4352500	+		8340	22212	5981	6031	8105	8105					-0.0035355913041712483
EEATFQQIY	9	Unmodified	_EEATFQQIY_					0	0	0		ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	MULTI-MSMS	A375_MHC_IP_R1	1	565.2259521484375	2	564.764029	1127.5135	-0.62259	-0.00035161	0.16802	9.4894E-05	-0.45456	-0.00025672	564.7644619130724	90.974	0.55715	90.974	90.742	91.299	0					16	10	2	0	0	0	0.62719	1	33371	33371		13.508	0.97634	1	1935900			8341	1820	5982	6032	8106	8106					-0.045151613815278324
EEATFQQIY	9	Unmodified	_EEATFQQIY_					0	0	0		ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	MULTI-SECPEP	A375_MHC_IP_R2	2	565.1636962890625	2	564.764029	1127.5135	-0.47443	-0.00026794	-0.34699	-0.00019597	-0.82142	-0.00046391	564.7640138195853	76.958	0.50397	77.701	77.404	77.908	0.74293					15	9	2	0	0	0	0.60917	1	29241	29241		19.257	0	1	1534400			8342	1820	5982	6032	8107	8107					-0.045151613815278324
EEATIIHHY	9	Unmodified	_EEATIIHHY_					0	0	0		ENSG00000187676|ENST00000343307|B3GLCT;ENST00000461652.2_1_13:31835091-31857210:+|nuORF	ENSG00000187676|ENST00000343307|B3GLCT	ENSG00000187676|ENST00000343307|B3GLCT	MULTI-MSMS	A375_MHC_IP_R1	1	557.1716918945312	2	556.772188	1111.52982	-0.63968	-0.00035615	-0.13221	-7.3608E-05	-0.77188	-0.00042976	556.772054930347	27.49	0.45479	27.49	27.331	27.786	0					18	7	3	0	0	0	0.011892	1	8388	8388		93.883	57.756	1	2841500			8343	8847	5983	6033	8108	8108					-0.02148035424761474
EEATIIHHY	9	Unmodified	_EEATIIHHY_					0	0	0		ENSG00000187676|ENST00000343307|B3GLCT;ENST00000461652.2_1_13:31835091-31857210:+|nuORF	ENSG00000187676|ENST00000343307|B3GLCT	ENSG00000187676|ENST00000343307|B3GLCT	MULTI-MSMS	A375_MHC_IP_R2	2	557.1718139648438	2	556.772188	1111.52982	-0.92889	-0.00051718	-0.21314	-0.00011867	-1.142	-0.00063585	556.7719001687208	26.901	1.0204	27.561	27.161	28.181	0.65992					14	8	2	0	0	0	0.0094581	2	9166	9166;9214		106.85	62.987	1	2321400			8344	8847	5983	6033	8109;8110	8109					-0.02148035424761474
EEATIQPDYP	10	Unmodified	_EEATIQPDYP_					0	0	0			REV__ENSG00000167904|ENST00000434581|TMEM68	REV__ENSG00000167904|ENST00000434581|TMEM68	MULTI-SECPEP	A375_MHC_IP_R1	1	581.679443359375	2	581.766768	1161.51898	-0.37596	-0.00021872	0.68754	0.00039999	0.31158	0.00018126	582.2688435747117	52.719	0.66044	52.719	52.438	53.099	0					16	12	2	0	0	0	0.91909	1	18708	18708		9.3831	9.3831	1	953820	+		8345	20804	5984	6034	8111	8111					-0.05531482589708503
EEATLCQNF	9	Unmodified	_EEATLCQNF_					0	0	0			REV__nc|ENSG00000138821|Q9C0K1-3|SLC39A8	REV__nc|ENSG00000138821|Q9C0K1-3|SLC39A8	MULTI-MSMS	A375_MHC_IP_R2	2	527.6634521484375	2	527.729132	1053.44371	-0.88762	-0.00046842	-0.73565	-0.00038823	-1.6233	-0.00085665	527.7288000120004	59.422	0.80854	60.169	59.845	60.653	0.74714					23	15	2	0	0	0	0.55818	1	22662	22662		16.942	0	1	1487900	+		8346	19126	5985	6035	8112	8112					-0.08087363321806151
EEATLFTKEL	10	Unmodified	_EEATLFTKEL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;ENST00000470723.5_1_7:127589266-127648128:+|nuORF;ENST00000467238.1_1_7:127631037-127637644:+|nuORF	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-SECPEP	A375_MHC_IP_R1	1	591.2088623046875	2	590.808436	1179.60232	-0.38047	-0.00022479	0.082245	4.8591E-05	-0.29823	-0.0001762	590.8085951492444	76.205	0.40375	76.205	76.017	76.421	0					15	7	3	0	0	0	0.70912	1	27835	27835		49.527	49.527	1	3158800			8347	9124	5986	6036	8113	8113					0.01970253858144133
EEATLFTKEL	10	Unmodified	_EEATLFTKEL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;ENST00000470723.5_1_7:127589266-127648128:+|nuORF;ENST00000467238.1_1_7:127631037-127637644:+|nuORF	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-SECPEP	A375_MHC_IP_R2	2	591.208251953125	2	590.808436	1179.60232	-0.58929	-0.00034816	0.39884	0.00023564	-0.19045	-0.00011252	590.8085175412768	75.414	0.51048	76.155	75.875	76.385	0.74052					15	9	2	0	0	0	0.17532	1	28652	28652		91.085	29.483	1	2811400			8348	9124	5986	6036	8114	8114					0.01970253858144133
EEATREPVLPL	11	Unmodified	_EEATREPVLPL_					0	0	0		nc|ENSG00000133619|A5PL33-3|KRBA1;nc|ENSG00000133619|A5PL33-2|KRBA1;nc|ENSG00000133619|A5PL33|KRBA1;ENSG00000133619|ENST00000496259|KRBA1	nc|ENSG00000133619|A5PL33-3|KRBA1	nc|ENSG00000133619|A5PL33-3|KRBA1	MULTI-MSMS	A375_MHC_IP_R1	1	418.9625549316406	3	418.562715	1252.66632	-0.17128	-7.1692E-05	0.017364	7.2681E-06	-0.15392	-6.4424E-05	418.562717332488	26.399	1.0085	26.399	26.17	27.179	0					51	19	4	0	0	0	0.63149	1	7843	7843		20.871	2.5314	1	157000000			8349	4516	5987	6037	8115	8115					0.05009034015074576
EEATREPVLPL	11	Unmodified	_EEATREPVLPL_					0	0	0		nc|ENSG00000133619|A5PL33-3|KRBA1;nc|ENSG00000133619|A5PL33-2|KRBA1;nc|ENSG00000133619|A5PL33|KRBA1;ENSG00000133619|ENST00000496259|KRBA1	nc|ENSG00000133619|A5PL33-3|KRBA1	nc|ENSG00000133619|A5PL33-3|KRBA1	MULTI-SECPEP	A375_MHC_IP_R1	1	627.7391357421875	2	627.340435	1252.66632	-0.91793	-0.00057585	-0.044475	-2.7901E-05	-0.9624	-0.00060375	627.3402838652944	26.399	0.50661	26.399	26.221	26.728	0					26	9	4	0	0	0	0.86796	1	7866	7866		26.268	9.1552	1	24449000			8350	4516	5987	6037	8116	8116					0.05009034015074576
EEATREPVLPL	11	Unmodified	_EEATREPVLPL_					0	0	0		nc|ENSG00000133619|A5PL33-3|KRBA1;nc|ENSG00000133619|A5PL33-2|KRBA1;nc|ENSG00000133619|A5PL33|KRBA1;ENSG00000133619|ENST00000496259|KRBA1	nc|ENSG00000133619|A5PL33-3|KRBA1	nc|ENSG00000133619|A5PL33-3|KRBA1	MULTI-MSMS	A375_MHC_IP_R2	2	418.9626159667969	3	418.562715	1252.66632	-0.51839	-0.00021698	0.093333	3.9066E-05	-0.42506	-0.00017791	418.56276538450044	25.764	0.96697	26.424	26.194	27.161	0.65992					55	18	5	0	0	0	0.59166	1	8610	8610		23.964	4.8202	1	118170000			8351	4516	5987	6037	8117	8117					0.05009034015074576
EEATSSLSPV	10	Unmodified	_EEATSSLSPV_					0	0	0			REV__nc|ENSG00000112769|Q16363-2|LAMA4	REV__nc|ENSG00000112769|Q16363-2|LAMA4	MSMS	A375_MHC_IP_R1	1	510.22149658203125	2	510.248212	1018.48187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.49	1	136.49	135.99	136.99	0								0	0	0	0.15531	1	52574	52574		3.5965	0	1		+		8352	17754	5988	6038	8118	8118					-0.026631541354618093
EEAVGNIVKF	10	Unmodified	_EEAVGNIVKF_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-SECPEP	A375_MHC_IP_R2	2	553.2053833007812	2	553.298039	1104.58152	-0.84415	-0.00046706	-0.055013	-3.0438E-05	-0.89916	-0.0004975	553.2979950978768	72.82	0.40593	73.556	73.278	73.684	0.73541					12	7	2	0	0	0	0.27978	1	27637	27637		60.074	22.1	1	1407600			8353	8361	5989	6039	8119	8119					0.03341708269135779
EEAVQAKVL	9	Unmodified	_EEAVQAKVL_					0	0	0		nc|ENSG00000173120|Q9Y2K7-4|KDM2A;nc|ENSG00000173120|Q9Y2K7-5|KDM2A;nc|ENSG00000173120|Q9Y2K7-2|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-3|KDM2A	nc|ENSG00000173120|Q9Y2K7-4|KDM2A	nc|ENSG00000173120|Q9Y2K7-4|KDM2A	MULTI-SECPEP	A375_MHC_IP_R2	2	494.17926025390625	2	493.779482	985.544411	-0.71949	-0.00035527	-0.20486	-0.00010115	-0.92435	-0.00045643	493.7791825500415	37.978	0.41175	38.752	38.585	38.997	0.77451					11	7	2	0	0	0	0.04395	1	13982	13982		81.89	43.916	1	2511900			8354	7771	5990	6040	8120	8120					0.05106036723384477
EEAVSDRY	8	Unmodified	_EEAVSDRY_					0	0	0			REV__ENSG00000133030|ENST00000651222|MPRIP	REV__ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	A375_MHC_IP_R2	2	485.1196594238281	2	484.719621	967.42469	-0.78566	-0.00038082	1.1731	0.00056865	0.38749	0.00018782	484.7201102900577	30.066	0.45606	30.784	30.608	31.064	0.71857					13	8	2	0	0	0	0.7338	1	10577	10577		24.674	7.7316	1	2003300	+		8355	18701	5991	6041	8121	8121					-0.06032576621191765
EEAWINEKM	9	Unmodified	_EEAWINEKM_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	A375_MHC_IP_R1	1	575.665771484375	2	575.265881	1148.51721	-0.1671	-9.6125E-05	-0.49086	-0.00028238	-0.65796	-0.0003785	575.2654479074793	57.314	0.76336	57.314	57.007	57.771	0					18	14	2	0	0	0	0.2415	1	20577	20577		34.932	8.0484	1	2163200			8356	9183	5992	6042	8122	8122					-0.051108148792991415
EEAYTTEHW	9	Unmodified	_EEAYTTEHW_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000526364.1_1_11:125488416-125491330:+|nuORF	ENSG00000134910|ENST00000392708|STT3A	ENSG00000134910|ENST00000392708|STT3A	MULTI-MSMS	A375_MHC_IP_R1	1	583.6436157226562	2	583.24346	1164.47237	-0.064223	-3.7458E-05	0.15971	9.315E-05	0.095486	5.5692E-05	583.2435543492679	43.278	0.86471	43.278	42.79	43.655	0					30	16	3	0	0	0	0.0094266	2	15041	15004;15041		97.075	67.993	1	3794500			8357	4626	5993	6043	8123;8124	8124					-0.10328922420990239
EEAYTTEHW	9	Unmodified	_EEAYTTEHW_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000526364.1_1_11:125488416-125491330:+|nuORF	ENSG00000134910|ENST00000392708|STT3A	ENSG00000134910|ENST00000392708|STT3A	MULTI-MSMS	A375_MHC_IP_R2	2	583.64306640625	2	583.24346	1164.47237	-0.34756	-0.00020271	-0.062368	-3.6376E-05	-0.40993	-0.00023909	583.243433124489	42.643	0.5582	43.416	43.116	43.674	0.7724					27	10	3	0	0	0	0.0094266	2	15859	15803;15859		97.075	67.993	1	4701800			8358	4626	5993	6043	8125;8126	8126					-0.10328922420990239
EECCCCCCEM	10	Unmodified	_EECCCCCCEM_					0	0	0			REV__ENSG00000170775|ENST00000303921|GPR37	REV__ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R1	1	578.177001953125	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.386	1	47.386	46.886	47.886	0								0	0	0	0.15628	1	16666	16666		0.45834	0.45834	1		+		8359	21016	5994	6044	8127	8127					-0.3370121624063813
EECCCCCCEM	10	Unmodified	_EECCCCCCEM_					0	0	0			REV__ENSG00000170775|ENST00000303921|GPR37	REV__ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R1	1	578.1773071289062	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.628	1	58.628	58.128	59.128	0								0	0	0	0.15591	1	21064	21064		1.6526	1.6526	1		+		8360	21016	5994	6044	8128	8128					-0.3370121624063813
EECCCCCCEM	10	Unmodified	_EECCCCCCEM_					0	0	0			REV__ENSG00000170775|ENST00000303921|GPR37	REV__ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R1	1	578.2108764648438	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.3	1	108.3	107.8	108.8	0								0	0	0	0.15629	1	39730	39730		0.40072	0.40072	1		+		8361	21016	5994	6044	8129	8129					-0.3370121624063813
EECCCCCCEM	10	Unmodified	_EECCCCCCEM_					0	0	0			REV__ENSG00000170775|ENST00000303921|GPR37	REV__ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R2	2	578.2001953125	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.603	1	26.263	25.763	26.763	0.65992								0	0	0	0.1552	1	8574	8574		3.9444	3.9444	1		+		8362	21016	5994	6044	8130	8130					-0.3370121624063813
EECCCCCCEM	10	Unmodified	_EECCCCCCEM_					0	0	0			REV__ENSG00000170775|ENST00000303921|GPR37	REV__ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R2	2	578.1957397460938	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.024	1	35.787	35.287	36.287	0.76338								0	0	0	0.15628	1	12677	12677		0.45834	0.45834	1		+		8363	21016	5994	6044	8131	8131					-0.3370121624063813
EECCCCCCEM	10	Unmodified	_EECCCCCCEM_					0	0	0			REV__ENSG00000170775|ENST00000303921|GPR37	REV__ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R2	2	578.1951904296875	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.156	1	39.931	39.431	40.431	0.77451								0	0	0	0.1552	1	14446	14446		3.9444	3.9444	1		+		8364	21016	5994	6044	8132	8132					-0.3370121624063813
EECCCCCCEM	10	Unmodified	_EECCCCCCEM_					0	0	0			REV__ENSG00000170775|ENST00000303921|GPR37	REV__ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R2	2	578.1826782226562	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.221	1	47.982	47.482	48.482	0.76128								0	0	0	0.15628	1	17701	17701		0.45834	0.45834	1		+		8365	21016	5994	6044	8133	8133					-0.3370121624063813
EECCCCCCEM	10	Unmodified	_EECCCCCCEM_					0	0	0			REV__ENSG00000170775|ENST00000303921|GPR37	REV__ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R2	2	578.1669311523438	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.78	1	101.54	101.04	102.04	0.76278								0	0	0	0.15628	1	38207	38207		0.45834	0.45834	1		+		8366	21016	5994	6044	8134	8134					-0.3370121624063813
EECFEYDCQ	9	Unmodified	_EECFEYDCQ_					0	0	0		ENST00000469506.3_1_3:42201841-42226383:+|nuORF;nc|ENSG00000182606|Q9UPV9-2|TRAK1	ENST00000469506.3_1_3:42201841-42226383:+|nuORF	ENST00000469506.3_1_3:42201841-42226383:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1165.2789306640625	1	1165.38125	1164.37398	0.1711	0.0001994	3.5932	0.0041874	3.7643	0.0043868	1166.3889144520479	120.81	0.25191	121.26	121.17	121.42	0.44488					6	4	2	0	0	0	0.72507	1	46144	46144		4.756	0.81161	1	47913000			8367	12319	5995	6045	8135	8135					-0.2016361005271392
EECGKAFK	8	Unmodified	_EECGKAFK_					0	0	0		ENSG00000196247|ENST00000620827|ZNF107;nc|ENSG00000196247|Q9UII5|ZNF107;ZNF99|p.S578L|1|0.3|ENSG00000213973|chr19:22758176-22758176|G/A|missense_variant;ENSG00000146757|ENST00000328747|ZNF92;ENSG00000196109|ENST00000397121|ZNF676;ENSG00000237440|ENST00000427401|ZNF737;nc|ENSG00000146757|Q03936-3|ZNF92;nc|ENSG00000160352|Q96N38|ZNF714;ENSG00000160352|ENST00000456283|ZNF714;nc|ENSG00000105750|Q03923-2|ZNF85;ENSG00000182141|ENST00000356929|ZNF708;ENSG00000197372|ENST00000359788|ZNF675;ENSG00000198039|ENST00000476120|ZNF273;ENSG00000197360|ENST00000357774|ZNF98;ENSG00000160229|ENST00000344519|ZNF66;ENSG00000196705|ENST00000311048|ZNF431;nc|ENSG00000184635|P35789-2|ZNF93;ZNF429|p.S493F|1|0.59|ENSG00000197013|chr19:21537531-21537531|C/T|missense_variant;ENSG00000167232|ENST00000300619|ZNF91;ENSG00000105750|ENST00000328178|ZNF85;ENSG00000213988|ENST00000418063|ZNF90;ENSG00000184635|ENST00000343769|ZNF93;ENSG00000196263|ENST00000308031|ZNF471;nc|ENSG00000196268|Q6ZR52|ZNF493;ENSG00000196268|ENST00000392288|ZNF493;nc|ENSG00000198521|P17038-2|ZNF43;ENSG00000198521|ENST00000354959|ZNF43;ENSG00000213973|ENST00000596209|ZNF99;nc|ENSG00000167232|Q05481-2|ZNF91;nc|ENSG00000184635|P35789-3|ZNF93;ENSG00000229676|ENST00000456783|ZNF492;ENSG00000188171|ENST00000601440|ZNF626;nc|ENSG00000160352|Q96N38-3|ZNF714;nc|ENSG00000256771|O75346-2|ZNF253;ZNF99|p.S522L|1|0.16|ENSG00000213973|chr19:22758344-22758344|G/A|missense_variant;ZNF99|p.K286N|1|0.42|ENSG00000213973|chr19:22759051-22759051|T/A|missense_variant;ZNF98|p.S390T|1|0.75|ENSG00000197360|chr19:22392067-22392067|A/T|missense_variant;ZNF92|p.R323K|1|0.29|ENSG00000146757|chr7:65399082-65399082|G/A|missense_variant;ZNF626|p.S353F|1|0.16|ENSG00000188171|chr19:20624819-20624819|G/A|missense_variant;ZNF43|p.S662F|1|0.45|ENSG00000198521|chr19:21808052-21808052|G/A|missense_variant;ENST00000397121.2_1_19:22362411-22362768:-|nuORF;ENST00000609841.1_1_10:42831530-42831992:-|nuORF;ENST00000600110.1_1_19:23779328-23779892:+|nuORF;ENST00000594254.1_1_19:21565732-21566473:+|nuORF;ENSG00000172687|ENST00000683779|ZNF738;ENSG00000234444|ENST00000423484|ZNF736;nc|ENSG00000160352|Q96N38-2|ZNF714;ZNF99|p.K507Nfs*23|1|0.06|ENSG00000213973|chr19:22758388-22758388|T/-|frameshift_variant;nc|ENSG00000168122|Q9NSJ1|ZNF355P;nc|ENSG00000250312|Q3SXZ3-2|ZNF718;nc|ENSG00000188171|Q68DY1-2|ZNF626;ENSG00000131127|ENST00000240499|ZNF141;ENSG00000250312|ENST00000510175|ZNF718;ENSG00000152926|ENST00000282869|ZNF117;ENST00000600692.5_1_19:21350445-21366834:+|nuORF;ENSG00000256771|ENST00000589717|ZNF253;nc|ENSG00000198039|Q14593-2|ZNF273;nc|ENSG00000146757|Q03936-2|ZNF92;ENST00000601416.1_19:21281704-21301132:+|nuORF;ENSG00000196350|ENST00000601693|ZNF729;ENSG00000197013|ENST00000358491|ZNF429;nc|ENSG00000197124|O95780-2|ZNF682;nc|ENSG00000197124|O95780-3|ZNF682;ENSG00000197124|ENST00000397165|ZNF682;ENSG00000269067|ENST00000594710|ZNF728;ENST00000600766.1_3_19:23032061-23041232:+|nuORF;ENSG00000268696|ENST00000600766|ZNF723;ENST00000472297.2_1_19:24014717-24015296:+|nuORF	ENSG00000196247|ENST00000620827|ZNF107;ENSG00000197013|ENST00000358491|ZNF429;nc|ENSG00000197124|O95780-2|ZNF682;ENSG00000269067|ENST00000594710|ZNF728;ENST00000472297.2_1_19:24014717-24015296:+|nuORF	ENSG00000269067|ENST00000594710|ZNF728	MSMS	A375_MHC_IP_R1	1	456.28326416015625	2	456.218203	910.421853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.764	1	20.764	20.264	21.264	0								0	0	0	0.16876	1	5374	5374		9.3474	1.4373	1				8368	9977;9019;9102;9119;12371	5996	6046	8136	8136					-0.036941232797062185
EECIRHEV	8	Unmodified	_EECIRHEV_					0	0	0			REV__DGCR6L|p.R131C|1|0.38|ENSG00000128185|chr22:20315458-20315458|G/A|missense_variant	REV__DGCR6L|p.R131C|1|0.38|ENSG00000128185|chr22:20315458-20315458|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	507.6794738769531	2	507.737291	1013.46003	-0.89499	-0.00045442	0.73527	0.00037333	-0.15972	-8.1096E-05	507.7379913560253	54.958	0.30627	55.709	55.473	55.779	0.75075					7	5	2	0	0	0	0.77123	1	20757	20757		14.582	4.5078	1	520030	+		8369	15988	5997	6047	8137	8137					-0.04616237365030429
EECRWGRF	8	Unmodified	_EECRWGRF_					0	0	0			REV__nc|ENSG00000157890|A6BM72-2|MEGF11	REV__nc|ENSG00000157890|A6BM72-2|MEGF11	MULTI-SECPEP	A375_MHC_IP_R2	2	541.2000122070312	2	541.74545	1081.47635	-0.73766	-0.00039962	-3.12	-0.0016903	-3.8577	-0.0020899	541.7442795793056	69.372	0.5067	70.107	69.879	70.386	0.73421					14	9	3	0	0	0	0.93416	1	26216	26216		14.582	0	1	1330400	+		8370	20053	5998	6048	8138	8138					-0.06113111408262739
EECSDSEGSH	10	Unmodified	_EECSDSEGSH_					0	0	0		nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	MULTI-SECPEP	A375_MHC_IP_R1	1	1080.027099609375	1	1079.35821	1078.35093	-0.44896	-0.00048459	-0.407	-0.0004393	-0.85596	-0.00092389	1080.357405033787	123.82	0.25485	123.82	123.69	123.94	0					6	4	2	0	0	0	0.93615	1	46432	46432		3.9444	1.6417	1	37303000			8371	9407	5999	6049	8139	8139					-0.18510912845817984
EECTLPEEQP	10	Unmodified	_EECTLPEEQP_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MSMS	A375_MHC_IP_R1	1	587.6456909179688	2	587.750261	1173.48597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.447	1	33.447	32.947	33.947	0								0	0	0	0.15288	1	10920	10920		11.495	0.6952	1		+		8372	16332	6000	6050	8140	8140					-0.09383432704066763
EEDATLKEL	9	Unmodified	_EEDATLKEL_					0	0	0		nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40;nc|ENSG00000085982|Q9NVE5-2|USP40	nc|ENSG00000085982|Q9NVE5|USP40	nc|ENSG00000085982|Q9NVE5|USP40	MULTI-SECPEP	A375_MHC_IP_R2	2	524.6644897460938	2	524.263862	1046.51317	-0.72342	-0.00037926	0.81384	0.00042667	0.090425	4.7407E-05	524.2642561845383	34.752	0.55489	35.515	35.324	35.878	0.76338					16	10	2	0	0	0	0.43707	1	12610	12610		36.044	12.896	1	3592000			8373	1823	6001	6051	8141	8141					-0.008225811013744533
EEDCEDPE	8	Unmodified	_EEDCEDPE_					0	0	0		ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	MULTI-SECPEP	A375_MHC_IP_R1	1	964.884765625	1	965.304048	964.296771	0.37944	0.00036627	2.9109	0.0028099	3.2903	0.0031761	965.3069507244992	116.63	0.91667	116.63	116.14	117.06	0					20	17	2	0	0	0	0.94479	1	42662	42662		19.439	1.304	1	48336000			8374	3616	6002	6052	8142	8142					-0.1868050499739411
EEDCGETSFS	10	Unmodified	_EEDCGETSFS_					0	0	0			REV__TLR5|p.L624F|1|0.18|ENSG00000187554|chr1:223111162-223111162|G/A|missense_variant	REV__TLR5|p.L624F|1|0.18|ENSG00000187554|chr1:223111162-223111162|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	551.6463623046875	2	552.195319	1102.37608	-0.55957	-0.00030899	0.90772	0.00050124	0.34816	0.00019225	552.69703613853	60.558	0.50911	60.558	60.312	60.821	0					19	9	3	0	0	0	0.70329	1	21742	21742		10.824	2.2306	1	2170400	+		8375	28122	6003	6053	8143	8143					-0.171008580432499
EEDDELHSQ	9	Unmodified	_EEDDELHSQ_					0	0	0		ENST00000460066.5_1_6:9769165-9933129:-|nuORF;nc|ENSG00000181355|Q8IZS5-3|OFCC1	ENST00000460066.5_1_6:9769165-9933129:-|nuORF	ENST00000460066.5_1_6:9769165-9933129:-|nuORF	MSMS	A375_MHC_IP_R1	1	551.17236328125	2	551.220182	1100.42581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.737	1	81.737	81.237	82.237	0								0	0	0	0.15486	1	29873	29873		10.824	0.75	1				8376	12163	6004	6054	8144	8144					-0.12038407042928156
EEDDELHSQ	9	Unmodified	_EEDDELHSQ_					0	0	0		ENST00000460066.5_1_6:9769165-9933129:-|nuORF;nc|ENSG00000181355|Q8IZS5-3|OFCC1	ENST00000460066.5_1_6:9769165-9933129:-|nuORF	ENST00000460066.5_1_6:9769165-9933129:-|nuORF	MSMS	A375_MHC_IP_R1	1	551.1721801757812	2	551.220182	1100.42581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.825	1	81.825	81.325	82.325	0								0	0	0	0.15486	1	29908	29908		11.64	1.5664	1				8377	12163	6004	6054	8145	8145					-0.12038407042928156
EEDDEYME	8	Unmodified	_EEDDEYME_					0	0	0			REV__nc|ENSG00000258947|Q13509-2|TUBB3	REV__nc|ENSG00000258947|Q13509-2|TUBB3	MULTI-MSMS	A375_MHC_IP_R1	1	1060.2874755859375	1	1059.34591	1058.33864	0.11131	0.00011792	2.5722	0.0027248	2.6835	0.0028427	1060.3506681594788	119.14	0.65897	119.14	118.58	119.23	0					14	12	2	0	0	0	0.77752	1	43720	43720		5.7604	0	1	26157000	+		8378	22901	6005	6055	8146	8146					-0.18819949308863215
EEDDHMEYC	9	Unmodified	_EEDDHMEYC_					0	0	0		nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3	nc|ENSG00000170004|Q12873-3|CHD3	nc|ENSG00000170004|Q12873-3|CHD3	MULTI-MSMS	A375_MHC_IP_R2	2	585.6472778320312	2	585.689346	1169.36414	-0.74235	-0.00043479	-2.1986	-0.0012877	-2.941	-0.0017225	585.6890355124337	36.367	0.61151	37.138	36.85	37.461	0.7709					23	11	3	0	0	0	0.72507	1	13166	13166		4.756	0	1	3595700			8379	14761	6006	6056	8147	8147					-0.2137679805807693
EEDDKAQFLY	10	Unmodified	_EEDDKAQFLY_					0	0	0			REV__ENSG00000115306|ENST00000356805|SPTBN1	REV__ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R2	2	629.68408203125	2	629.285325	1256.5561	-1.061	-0.00066766	-0.14475	-9.109E-05	-1.2057	-0.00075875	629.2849805199428	72.016	0.65725	72.751	72.364	73.021	0.73421					23	12	3	0	0	0	0.6774	1	27337	27337		34.402	11.665	1	1885800	+		8380	17871	6007	6057	8148	8148					-0.06191811043936468
EEDDRRLGF	9	Unmodified	_EEDDRRLGF_					0	0	0		ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	MULTI-MSMS	A375_MHC_IP_R2	2	379.9157409667969	3	379.515877	1135.5258	-0.14555	-5.524E-05	0.86471	0.00032817	0.71915	0.00027293	379.5161967791549	34.709	0.8596	35.472	35.273	36.132	0.76338					31	16	2	0	0	0	0.11629	1	12570	12570		37.075	16.66	1	2880200			8381	7552	6008	6058	8149	8149					-0.03654124918489288
EEDDRRLGF	9	Unmodified	_EEDDRRLGF_					0	0	0		ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	MULTI-MATCH	A375_MHC_IP_R1	1		3	379.515877	1135.5258	0.51599	0.00019583	0.067584	2.5649E-05	0.58357	0.00022148	379.5157489405923	35.504	0.56087	35.504	35.116	35.676	0	0.015514	-0.00051331	NaN	37.075	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2487400			8382	7552	6008	6058							-0.03654124918489288
EEDDYENHD	9	Unmodified	_EEDDYENHD_					0	0	0		ENST00000475665.5_1_3:49896753-49898557:-|nuORF;nc|ENSG00000164076|Q8NCB2-3|CAMKV;nc|ENSG00000164076|Q8NCB2-2|CAMKV;ENSG00000164076|ENST00000477224|CAMKV	ENST00000475665.5_1_3:49896753-49898557:-|nuORF	ENST00000475665.5_1_3:49896753-49898557:-|nuORF	MSMS	A375_MHC_IP_R1	1	583.205810546875	2	583.199447	1164.38434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.26	1	86.26	85.76	86.76	0								0	0	0	0.15486	1	31625	31625		4.756	0.81161	1				8383	6772	6009	6059	8150	8150					-0.1912758780229069
EEDECAIEMY	10	Unmodified	_EEDECAIEMY_					0	0	0		ENST00000398028.3_1_6:151148820-151149375:+|nuORF	ENST00000398028.3_1_6:151148820-151149375:+|nuORF	ENST00000398028.3_1_6:151148820-151149375:+|nuORF	MSMS	A375_MHC_IP_R1	1	616.1852416992188	2	616.228304	1230.44206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.673	1	53.673	53.173	54.173	0								0	0	0	0.15417	1	19146	19146		7.2892	0	1				8384	11515	6010	6060	8151	8151					-0.16394785192710515
EEDEDAYKKQF	11	Unmodified	_EEDEDAYKKQF_					0	0	0		ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-SECPEP	A375_MHC_IP_R1	1	467.1524353027344	3	467.87714	1400.60959	-0.62138	-0.00029073	-0.16259	-7.6072E-05	-0.78397	-0.0003668	468.21131682506666	26.688	0.35378	26.688	26.524	26.878	0					13	6	3	0	0	0	0.93746	1	7982	7982		13.519	10.887	1	4536800			8385	3779	6011	6061	8152	8152					-0.07469058332117129
EEDEDAYKKQF	11	Unmodified	_EEDEDAYKKQF_					0	0	0		ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-SECPEP	A375_MHC_IP_R2	2	467.17132568359375	3	467.87714	1400.60959	-1.0393	-0.00048627	0.12494	5.8455E-05	-0.91437	-0.00042781	467.87723523143814	26.203	0.40521	26.863	26.653	27.058	0.65992					15	7	3	0	0	0	0.99246	1	8848	8848		4.7159	4.3077	1	3343000			8386	3779	6011	6061	8153	8153					-0.07469058332117129
EEDEDSDYNY	10	Unmodified	_EEDEDSDYNY_					0	0	0			REV__nc|ENSG00000144712|O75155-2|CAND2	REV__nc|ENSG00000144712|O75155-2|CAND2	MULTI-SECPEP	A375_MHC_IP_R1	1	640.1161499023438	2	639.717669	1277.42079	-0.49515	-0.00031676	-2.5075	-0.0016041	-3.0026	-0.0019208	639.7162450015279	47.76	0.4531	47.76	47.517	47.97	0					13	8	2	0	0	0	0.9269	1	16845	16845		10.824	2.9138	1	1839100	+		8387	19440	6012	6062	8154	8154					-0.20682755696225286
EEDEDSDYNY	10	Unmodified	_EEDEDSDYNY_					0	0	0			REV__nc|ENSG00000144712|O75155-2|CAND2	REV__nc|ENSG00000144712|O75155-2|CAND2	MULTI-MATCH	A375_MHC_IP_R2	2		2	639.717669	1277.42079	-0.56698	-0.0003627	-2.1817	-0.0013956	-2.7486	-0.0017584	639.7164511035633	47.243	0.40774	48.004	47.766	48.174	0.76128	0.12176	0.00020718	NaN	10.824	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1839800	+		8388	19440	6012	6062							-0.20682755696225286
EEDEDSSSN	9	Unmodified	_EEDEDSSSN_					0	0	0			REV__nc|ENSG00000054267|Q4LE39-4|ARID4B	REV__nc|ENSG00000054267|Q4LE39-4|ARID4B	MULTI-MSMS	A375_MHC_IP_R2	2	1012.2409057617188	1	1011.33852	1010.33124	0.034624	3.5017E-05	-2.6231	-0.0026529	-2.5885	-0.0026179	1012.334935353013	123.7	0.30385	124.03	123.89	124.19	0.32969					6	5	2	0	0	0	0.72985	1	47623	47623		4.3292	0.38484	1	13868000	+		8389	16402	6013	6063	8155	8155					-0.17350965584932965
EEDEEEEFGD	10	Unmodified	_EEDEEEEFGD_					0	0	0		nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	MSMS	A375_MHC_IP_R1	1	614.1575317382812	2	614.21222	1226.40989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.93	1	136.93	136.43	137.43	0								0	0	0	0.15531	1	52728	52728		3.5965	0	1				8390	2013	6014	6064	8156	8156					-0.19426158070518795
EEDEELDDSDS	11	Unmodified	_EEDEELDDSDS_					0	0	0			REV__ENST00000467184.5_1_2:160295516-160335230:-|nuORF	REV__ENST00000467184.5_1_2:160295516-160335230:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	641.7142333984375	2	641.725691	1281.43683	-0.86967	-0.00055809	-1.0999	-0.00070582	-1.9696	-0.0012639	641.7256339714256	41.579	0.46107	41.579	41.419	41.88	0					10	8	2	0	0	0	0.72949	1	14338	14338		9.3831	0	1	998800	+		8391	18255	6015	6065	8157	8157					-0.19263094249981805
EEDEGCCCCE	10	Unmodified	_EEDEGCCCCE_					0	0	0		ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000197136|Q9H6A9-3|PCNX3;ENST00000439247.2_1_11:65394334-65404446:+|nuORF	ENSG00000197136|ENST00000355703|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	MSMS	A375_MHC_IP_R1	1	560.1775512695312	2	560.140317	1118.26608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.013	1	86.013	85.513	86.513	0								0	0	0	0.15629	1	31531	31531		0.40072	0.40072	1				8392	9121	6016	6066	8158	8158					-0.2883206596995933
EEDEGCCCCE	10	Unmodified	_EEDEGCCCCE_					0	0	0		ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000197136|Q9H6A9-3|PCNX3;ENST00000439247.2_1_11:65394334-65404446:+|nuORF	ENSG00000197136|ENST00000355703|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	MSMS	A375_MHC_IP_R1	1	560.1851806640625	2	560.140317	1118.26608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.069	1	88.069	87.569	88.569	0								0	0	0	0.15642	1	32325	32325		0	0	1				8393	9121	6016	6066	8159	8159					-0.2883206596995933
EEDEKRFLV	9	Unmodified	_EEDEKRFLV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	A375_MHC_IP_R1	1	389.24066162109375	3	388.868027	1163.58225	-0.13602	-5.2895E-05	0.51593	0.00020063	0.37991	0.00014773	388.86806586132155	30.342	1.2131	30.342	30.099	31.312	0					67	23	4	0	0	0	0.41409	1	9728	9728		17.443	3.8278	1	55428000			8394	1768	6017	6067	8160	8160					0.007005029181755162
EEDEKRFLV	9	Unmodified	_EEDEKRFLV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	A375_MHC_IP_R2	2	389.24029541015625	3	388.868027	1163.58225	-0.61784	-0.00024026	0.79617	0.00030961	0.17833	6.9346E-05	388.868166449992	29.863	1.0619	30.561	30.134	31.196	0.69872					70	20	5	0	0	0	0.29981	1	10475	10475		22.658	4.285	1	74856000			8395	1768	6017	6067	8161	8161					0.007005029181755162
EEDELVGS	8	Unmodified	_EEDELVGS_					0	0	0		ENSG00000130226|ENST00000377770|DPP6;DPP6|p.P89S|1|0.34|ENSG00000130226|chr7:154446235-154446235|C/T|missense_variant	ENSG00000130226|ENST00000377770|DPP6	ENSG00000130226|ENST00000377770|DPP6	MSMS	A375_MHC_IP_R2	2	439.161376953125	2	439.192905	876.371257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.9	1	139.96	139.46	140.46	0.059906								0	0	0	0.16876	1	54790	54790		2.3027	0	1				8396	4230	6018	6068	8162	8162					-0.0718737412369137
EEDEYKAFY	9	Unmodified	_EEDEYKAFY_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000550479.1_1_12:104332030-104335334:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-SECPEP	A375_MHC_IP_R1	1	597.653076171875	2	597.253494	1192.49243	-0.29979	-0.00017905	0.44434	0.00026538	0.14454	8.6329E-05	597.2535933181799	56.657	0.60911	56.657	56.347	56.956	0					28	11	3	0	0	0	0.16676	1	20276	20276		58.679	40.532	1	5829100			8397	7095	6019	6069	8163	8163					-0.09611171481037672
EEDEYKAFY	9	Unmodified	_EEDEYKAFY_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000550479.1_1_12:104332030-104335334:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-SECPEP	A375_MHC_IP_R2	2	597.6529541015625	2	597.253494	1192.49243	-0.77802	-0.00046468	-0.067356	-4.0228E-05	-0.84538	-0.0005049	597.2533712529873	56.09	0.71547	56.84	56.54	57.255	0.75015					22	13	2	0	0	0	0.13208	1	21157	21157		66.457	46.003	1	5502500			8398	7095	6019	6069	8164	8164					-0.09611171481037672
EEDFFASHVSP	11	Unmodified	_EEDFFASHVSP_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	A375_MHC_IP_R2	2	422.135986328125	3	422.187537	1263.54078	-0.45603	-0.00019253	1.2456	0.00052589	0.7896	0.00033336	422.5230449785782	20.981	0.30431	21.592	21.413	21.717	0.61029					7	5	2	0	0	0	0.72949	1	6576	6576		4.7159	0	1	742620			8399	9794	6020	6070	8165	8165					-0.08044677841144221
EEDFPSLREY	10	Unmodified	_EEDFPSLREY_					0	0	0		nc|ENSG00000020426|P51948-2|MNAT1;ENSG00000020426|ENST00000261245|MNAT1;ENST00000556764.5_1_14:61201502-61275155:+|nuORF	nc|ENSG00000020426|P51948-2|MNAT1	nc|ENSG00000020426|P51948-2|MNAT1	MULTI-MSMS	A375_MHC_IP_R1	1	643.19091796875	2	642.790775	1283.567	-0.33873	-0.00021774	-0.054783	-3.5214E-05	-0.39352	-0.00025295	642.7908043041281	72.234	1.2144	72.234	71.615	72.83	0					33	16	3	0	0	0	0.073556	1	26241	26241		69.338	57.098	1	9690500			8400	1058	6021	6071	8166	8166					-0.06344408669656332
EEDFPSLREY	10	Unmodified	_EEDFPSLREY_					0	0	0		nc|ENSG00000020426|P51948-2|MNAT1;ENSG00000020426|ENST00000261245|MNAT1;ENST00000556764.5_1_14:61201502-61275155:+|nuORF	nc|ENSG00000020426|P51948-2|MNAT1	nc|ENSG00000020426|P51948-2|MNAT1	MULTI-MSMS	A375_MHC_IP_R2	2	643.1910400390625	2	642.790775	1283.567	-1.0208	-0.00065617	0.054353	3.4938E-05	-0.96647	-0.00062124	642.790894206239	71.64	1.3156	72.375	71.706	73.021	0.73421					39	18	4	0	0	0	0.042457	2	27158	27158;27219		78.06	65.82	1	9080900			8401	1058	6021	6071	8167;8168	8167					-0.06344408669656332
EEDFYQGSME	10	Unmodified	_EEDFYQGSME_					0	0	0		ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	MSMS	A375_MHC_IP_R1	1	617.6675415039062	2	617.732068	1233.44958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.266	1	98.266	97.766	98.766	0								0	0	0	0.15308	1	36105	36105		10.824	3.5347	1				8402	4976	6022	6072	8169	8169					-0.15780309600768305
EEDGDQERL	9	Unmodified	_EEDGDQERL_					0	0	0		AHNAK2|p.G235E|1|0.4|ENSG00000185567|chr14:104954747-104954747|C/T|missense_variant	AHNAK2|p.G235E|1|0.4|ENSG00000185567|chr14:104954747-104954747|C/T|missense_variant	AHNAK2|p.G235E|1|0.4|ENSG00000185567|chr14:104954747-104954747|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	546.1354370117188	2	545.736	1089.45745	-0.72509	-0.00039571	-1.2176	-0.00066448	-1.9427	-0.0010602	545.7352936045119	66.365	0.91563	66.365	65.717	66.632	0					21	17	2	0	0	0	0.73008	1	24090	24090		12.241	10.759	1	1594400			8403	88	6023	6073	8170	8170					-0.08370414288992833
EEDGHTHQW	9	Unmodified	_EEDGHTHQW_					0	0	0		ENST00000552949.1_1_12:69753653-69756720:+|nuORF;ENSG00000127337|ENST00000247843|YEATS4	ENST00000552949.1_1_12:69753653-69756720:+|nuORF	ENST00000552949.1_1_12:69753653-69756720:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	570.1305541992188	2	569.731052	1137.44755	-0.76984	-0.0004386	2.9234	0.0016656	2.1536	0.001227	569.7310413834633	28.461	0.35446	29.14	28.909	29.263	0.67857					19	6	4	0	0	0	0.25276	1	9835	9835		34.102	0	1	7566000			8404	4085	6024	6074	8171	8171					-0.11567557503713033
EEDGQLKSL	9	Unmodified	_EEDGQLKSL_					0	0	0		ENST00000526843.2_1_11:127810827-127810962:-|nuORF;ENST00000485817.1_1_3:125062955-125063264:-|nuORF;ENST00000487480.1_1_7:157174896-157178337:+|nuORF;nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6	ENST00000526843.2_1_11:127810827-127810962:-|nuORF	ENST00000526843.2_1_11:127810827-127810962:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	510.1556701660156	2	509.756204	1017.49785	-0.47473	-0.00024199	-0.1331	-6.7851E-05	-0.60783	-0.00030985	509.7561045225106	34.223	0.6072	34.223	33.95	34.557	0					29	11	3	0	0	0	0.0012561	2	11242	11242;11354		151.48	75.719	1	13196000			8405	2657	6025	6075	8172;8173	8172					-0.010194478985795286
EEDGQLKSL	9	Unmodified	_EEDGQLKSL_					0	0	0		ENST00000526843.2_1_11:127810827-127810962:-|nuORF;ENST00000485817.1_1_3:125062955-125063264:-|nuORF;ENST00000487480.1_1_7:157174896-157178337:+|nuORF;nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6	ENST00000526843.2_1_11:127810827-127810962:-|nuORF	ENST00000526843.2_1_11:127810827-127810962:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	510.1556091308594	2	509.756204	1017.49785	-1.1905	-0.00060688	-0.034724	-1.7701E-05	-1.2253	-0.00062458	509.7562104541756	33.52	0.71024	34.272	33.992	34.702	0.75225					35	13	4	0	0	0	0.0056874	2	11994	11959;11994		163.69	87.926	1	16634000			8406	2657	6025	6075	8174;8175	8175					-0.010194478985795286
EEDHVDLSL	9	Unmodified	_EEDHVDLSL_					0	0	0		ENSG00000124762|ENST00000244741|CDKN1A	ENSG00000124762|ENST00000244741|CDKN1A	ENSG00000124762|ENST00000244741|CDKN1A	MULTI-MSMS	A375_MHC_IP_R1	1	529.1456298828125	2	528.745836	1055.47712	-0.56078	-0.00029651	0.51443	0.000272	-0.046349	-2.4507E-05	528.745987661548	64.23	0.70897	64.23	63.837	64.546	0					19	11	2	0	0	0	0.026461	1	23238	23238		77.984	29.638	1	1987200			8407	3925	6026	6076	8176	8176					-0.04840038278234715
EEDHVDLSL	9	Unmodified	_EEDHVDLSL_					0	0	0		ENSG00000124762|ENST00000244741|CDKN1A	ENSG00000124762|ENST00000244741|CDKN1A	ENSG00000124762|ENST00000244741|CDKN1A	MULTI-MSMS	A375_MHC_IP_R2	2	529.14501953125	2	528.745836	1055.47712	-0.48278	-0.00025527	-0.069725	-3.6867E-05	-0.55251	-0.00029214	528.7456283796749	63.501	0.76192	64.241	63.835	64.597	0.74022					19	14	2	0	0	0	0.042197	1	24091	24091		67.344	33.241	1	1822100			8408	3925	6026	6076	8177	8177					-0.04840038278234715
EEDIYAHGRPS	11	Unmodified	_EEDIYAHGRPS_					0	0	0		TECPR2|p.L762R|1|0.08|ENSG00000196663|chr14:102435102-102435102|T/G|missense_variant	TECPR2|p.L762R|1|0.08|ENSG00000196663|chr14:102435102-102435102|T/G|missense_variant	TECPR2|p.L762R|1|0.08|ENSG00000196663|chr14:102435102-102435102|T/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	425.28662109375	3	425.198436	1272.57348	-0.5004	-0.00021277	3.378	0.0014363	2.8776	0.0012235	425.2000315675231	21.259	0.25276	21.879	21.777	22.03	0.61932					5	4	2	0	0	0	0.9889	1	6716	6716		2.2527	0	1	840210			8409	29318	6027	6077	8178	8178					-0.051904707182984566
EEDKFLLLY	9	Unmodified	_EEDKFLLLY_					0	0	0		nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56;ENST00000446987.5_1_7:44605603-44612175:-|nuORF	nc|ENSG00000136271|Q9NY93-2|DDX56	nc|ENSG00000136271|Q9NY93-2|DDX56	MULTI-SECPEP	A375_MHC_IP_R1	1	585.255615234375	2	585.308072	1168.60159	0.00098655	5.7743E-07	0.29621	0.00017337	0.29719	0.00017395	585.3081664716514	108.23	1.4203	108.23	107.85	109.27	0					78	27	5	0	0	0	0.09145	1	39812	39812		75.761	14.403	1	50555000			8410	4776	6028	6078	8179	8179					0.02403459209108405
EEDKFLLLY	9	Unmodified	_EEDKFLLLY_					0	0	0		nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56;ENST00000446987.5_1_7:44605603-44612175:-|nuORF	nc|ENSG00000136271|Q9NY93-2|DDX56	nc|ENSG00000136271|Q9NY93-2|DDX56	MULTI-MSMS	A375_MHC_IP_R2	2	585.7598266601562	2	585.308072	1168.60159	-0.55062	-0.00032229	-0.11322	-6.627E-05	-0.66385	-0.00038856	585.3078928447833	107.45	1.3777	108.21	107.84	109.22	0.75436					76	26	4	0	0	0	0.10637	1	40674	40674		62.573	22.615	1	44923000			8411	4776	6028	6078	8180	8180					0.02403459209108405
EEDKLEQIKKW	11	Unmodified	_EEDKLEQIKKW_					0	0	0		nc|ENSG00000122884|P13674-3|P4HA1;nc|ENSG00000122884|P13674-2|P4HA1;ENSG00000122884|ENST00000394890|P4HA1	nc|ENSG00000122884|P13674-3|P4HA1	nc|ENSG00000122884|P13674-3|P4HA1	MULTI-MSMS	A375_MHC_IP_R1	1	482.9927062988281	3	482.592675	1444.75619	-0.19	-9.1694E-05	-0.015778	-7.6144E-06	-0.20578	-9.9308E-05	482.59266671329993	38.654	0.50812	38.654	38.475	38.983	0					14	9	2	0	0	0	0.07771	1	13145	13145		74.094	65.342	1	6242700			8412	3814	6029	6079	8181	8181					0.051606636236328995
EEDKLEQIKKW	11	Unmodified	_EEDKLEQIKKW_					0	0	0		nc|ENSG00000122884|P13674-3|P4HA1;nc|ENSG00000122884|P13674-2|P4HA1;ENSG00000122884|ENST00000394890|P4HA1	nc|ENSG00000122884|P13674-3|P4HA1	nc|ENSG00000122884|P13674-3|P4HA1	MULTI-MSMS	A375_MHC_IP_R2	2	482.99212646484375	3	482.592675	1444.75619	-0.76339	-0.00036841	-0.55621	-0.00026842	-1.3196	-0.00063683	482.5926108069127	37.922	0.41218	38.696	38.483	38.895	0.77451					16	7	3	0	0	0	0.20256	1	13917	13917		54.259	48.025	1	6959600			8413	3814	6029	6079	8182	8182					0.051606636236328995
EEDKLTRSPF	10	Unmodified	_EEDKLTRSPF_					0	0	0		nc|ENSG00000166963|P78559-2|MAP1A;ENSG00000166963|ENST00000300231|MAP1A	nc|ENSG00000166963|P78559-2|MAP1A	nc|ENSG00000166963|P78559-2|MAP1A	MULTI-MSMS	A375_MHC_IP_R1	1	408.266357421875	3	407.875182	1220.60372	-0.50626	-0.00020649	0.44376	0.000181	-0.062496	-2.549E-05	407.87532229870885	30.348	0.85929	30.348	30.099	30.959	0					48	16	4	0	0	0	0.69833	1	9677	9677		7.9454	0.46833	1	14710000			8414	7142	6030	6080	8183	8183					0.0022388794689049973
EEDKNIFDY	9	Unmodified	_EEDKNIFDY_					0	0	0		ENSG00000230124|ENST00000367595|ACBD6	ENSG00000230124|ENST00000367595|ACBD6	ENSG00000230124|ENST00000367595|ACBD6	MULTI-MSMS	A375_MHC_IP_R1	1	587.158447265625	2	586.758943	1171.50333	-0.4184	-0.0002455	0.35677	0.00020934	-0.061628	-3.6161E-05	586.7591268939603	65.896	0.60865	65.896	65.514	66.122	0					19	11	2	0	0	0	0.032333	1	23833	23833		72.968	33.018	1	3287100			8415	9714	6031	6081	8184	8184					-0.07555769106761545
EEDKNIFDY	9	Unmodified	_EEDKNIFDY_					0	0	0		ENSG00000230124|ENST00000367595|ACBD6	ENSG00000230124|ENST00000367595|ACBD6	ENSG00000230124|ENST00000367595|ACBD6	MULTI-MSMS	A375_MHC_IP_R2	2	586.7034301757812	2	586.758943	1171.50333	-0.65105	-0.00038201	-0.10371	-6.0852E-05	-0.75476	-0.00044286	586.75896442742	65.245	0.60962	65.983	65.613	66.222	0.73811					33	11	4	0	0	0	0.094655	1	24728	24728		51.63	0	1	2824600			8416	9714	6031	6081	8185	8185					-0.07555769106761545
EEDLCEVLLY	10	Unmodified	_EEDLCEVLLY_					0	0	0			REV__ENST00000468046.1_1_9:136245909-136249825:+|nuORF	REV__ENST00000468046.1_1_9:136245909-136249825:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	613.2217407226562	2	613.286479	1224.55841	-0.33646	-0.00020635	-0.99064	-0.00060754	-1.3271	-0.00081389	613.786992442217	74.605	0.30367	74.605	74.451	74.754	0					8	5	2	0	0	0	0.45919	1	27195	27195		30.637	1.555	1	1131700	+		8417	25070	6032	6082	8186	8186					-0.04489098630483568
EEDLNNHFKSL	11	Unmodified	_EEDLNNHFKSL_					0	0	0		ENSG00000198130|ENST00000359678|HIBCH	ENSG00000198130|ENST00000359678|HIBCH	ENSG00000198130|ENST00000359678|HIBCH	MULTI-MSMS	A375_MHC_IP_R1	1	673.7223510742188	2	673.322773	1344.63099	-0.46432	-0.00031264	-0.21493	-0.00014471	-0.67925	-0.00045735	673.322538300092	71.46	0.40453	71.46	71.211	71.615	0					22	7	4	0	0	0	0.67989	1	25943	25943		17.113	4.8722	1	4234700			8418	9232	6033	6083	8187	8187					-0.02753628512709838
EEDLNNHFKSL	11	Unmodified	_EEDLNNHFKSL_					0	0	0		ENSG00000198130|ENST00000359678|HIBCH	ENSG00000198130|ENST00000359678|HIBCH	ENSG00000198130|ENST00000359678|HIBCH	MULTI-MSMS	A375_MHC_IP_R2	2	673.722412109375	2	673.322773	1344.63099	-0.76989	-0.00051838	-0.62009	-0.00041752	-1.39	-0.0009359	673.3223141246085	70.815	0.40337	71.549	71.302	71.706	0.73421					14	7	2	0	0	0	0.67989	1	26813	26813		17.113	0.96379	1	6075300			8419	9232	6033	6083	8188	8188					-0.02753628512709838
EEDLNNHFKSL	11	Unmodified	_EEDLNNHFKSL_					0	0	0		ENSG00000198130|ENST00000359678|HIBCH	ENSG00000198130|ENST00000359678|HIBCH	ENSG00000198130|ENST00000359678|HIBCH	MULTI-SECPEP	A375_MHC_IP_R2	2	448.6842346191406	3	449.217608	1344.63099	-0.35757	-0.00016063	-0.39698	-0.00017833	-0.75456	-0.00033896	449.21737433755015	70.734	0.86134	71.468	71.149	72.01	0.73421					47	16	4	0	0	0	0.99332	1	26834	26834		10.315	10.315	1	26696000			8420	9232	6033	6083	8189	8189					-0.02753628512709838
EEDLPENKK	9	Unmodified	_EEDLPENKK_					0	0	0		nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1;ENST00000394563.4_1_X:85340623-85340704:-|nuORF	nc|ENSG00000168439|P31948-3|STIP1	nc|ENSG00000168439|P31948-3|STIP1	MULTI-MSMS	A375_MHC_IP_R1	1	551.2572631835938	2	551.274761	1100.53497	-0.64507	-0.00035561	-2.6679	-0.0014707	-3.3129	-0.0018263	551.2736021493641	95.316	0.70895	95.316	95.007	95.716	0					18	13	2	0	0	0	0.6324	1	35173	35173		13.042	0	1	1048600			8421	7302	6034	6084	8190	8190					-0.011277763528141804
EEDLPENKKQ	10	Unmodified	_EEDLPENKKQ_					0	0	0		nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1;ENST00000394563.4_1_X:85340623-85340704:-|nuORF	nc|ENSG00000168439|P31948-3|STIP1	nc|ENSG00000168439|P31948-3|STIP1	MULTI-MSMS	A375_MHC_IP_R1	1	616.6534423828125	2	615.304049	1228.59355	-0.42944	-0.00026423	-0.017853	-1.0985E-05	-0.44729	-0.00027522	615.3041413677856	28.848	0.35299	28.848	28.643	28.996	0					15	6	3	0	0	0	0.6806	1	8996	8996		14.838	1.7958	1	3133600			8422	7302	6035	6085	8191	8191					-0.011607197783405354
EEDLREKF	8	Unmodified	_EEDLREKF_					0	0	0		nc|ENSG00000155636|Q8IUH3|RBM45;ENSG00000155636|ENST00000286070|RBM45;nc|ENSG00000155636|Q8IUH3-2|RBM45;ENST00000424000.6_1_2:178977216-178988379:+|nuORF	nc|ENSG00000155636|Q8IUH3|RBM45;ENST00000424000.6_1_2:178977216-178988379:+|nuORF	nc|ENSG00000155636|Q8IUH3|RBM45	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1841430664062	2	533.264196	1064.51384	-0.55828	-0.00029771	0.33305	0.0001776	-0.22523	-0.00012011	533.2644450802787	28.54	0.45642	28.54	28.288	28.745	0					13	8	2	0	0	0	0.86765	1	8760	8760		32.117	3.6301	1	2360400			8423	6150;11766	6036	6086	8192	8192					-0.015837416616705013
EEDLTDPVRC	10	Unmodified	_EEDLTDPVRC_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MSMS	A375_MHC_IP_R2	2	588.7291870117188	2	588.763703	1175.51285	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.18	1	98.939	98.439	99.439	0.75977								0	0	0	0.15353	1	37251	37251		9.3831	1.473	1				8424	9183	6037	6087	8193	8193					-0.06788324092894982
EEDLYMHYWFP	11	Unmodified	_EEDLYMHYWFP_					0	0	0			REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	MSMS	A375_MHC_IP_R1	1	510.4513244628906	3	510.551711	1528.6333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.614	1	55.614	55.114	56.114	0								0	0	0	0.16334	1	19896	19896		0.45452	0	1		+		8425	20461	6038	6088	8194	8194					-0.10986916099273003
EEDMLARY	8	Unmodified	_EEDMLARY_					0	0	0			REV__ENSG00000146648|ENST00000275493|EGFR	REV__ENSG00000146648|ENST00000275493|EGFR	MSMS	A375_MHC_IP_R2	2	513.6669921875	2	513.731674	1025.4488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.837	1	52.589	52.089	53.089	0.75225								0	0	0	0.16876	1	19520	19520		13.508	3.3245	1		+		8426	19545	6039	6089	8195	8195					-0.06291059459158532
EEDMTKVEF	9	Unmodified	_EEDMTKVEF_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575957.1_1_17:78115565-78120760:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-SECPEP	A375_MHC_IP_R2	2	564.6500244140625	2	564.249897	1126.48524	-0.45635	-0.0002575	1.1341	0.00063994	0.67779	0.00038244	564.7519640526946	124.98	0.25211	125.31	125.15	125.4	0.32969					8	4	3	0	0	0	0.46045	1	48578	48578		29.082	5.061	1	12564000			8427	5252	6040	6090	8196	8196					-0.07294227353122551
EEDNIVNY	8	Unmodified	_EEDNIVNY_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	ENSG00000070371|ENST00000427926|CLTCL1	ENSG00000070371|ENST00000427926|CLTCL1	MULTI-MSMS	A375_MHC_IP_R2	2	497.6423645019531	2	498.219454	994.424355	-0.73705	-0.00036721	0.012922	6.4378E-06	-0.72413	-0.00036078	498.219441888039	36.357	1.5774	37.128	36.698	38.275	0.7709					92	30	5	0	0	0	0.77123	1	13092	13092		14.582	2.0501	1	333020000			8428	1491	6041	6091	8197	8197					-0.07307996341046419
EEDNLAKREQD	11	Unmodified	_EEDNLAKREQD_					0	0	0		nc|ENSG00000077684|Q6IE81-3|JADE1;JADE1|p.Q582Pfs*19|1|0.04|ENSG00000077684|chr4:128871477-128871478|-/CACAAATAAAGAA|frameshift_variant;nc|ENSG00000077684|Q6IE81-2|JADE1;ENSG00000077684|ENST00000226319|JADE1	nc|ENSG00000077684|Q6IE81-3|JADE1	nc|ENSG00000077684|Q6IE81-3|JADE1	MULTI-MSMS	A375_MHC_IP_R1	1	674.20849609375	2	673.81277	1345.61099	-0.58489	-0.0003941	-4.2928	-0.0028925	-4.8777	-0.0032866	673.810165663029	70.723	0.40761	70.723	70.494	70.902	0					12	7	2	0	0	0	0.69231	1	25679	25679		16.149	0	1	1928700			8429	1660	6042	6092	8198	8198					-0.047994242433333056
EEDNPVIRSY	10	Unmodified	_EEDNPVIRSY_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MULTI-MSMS	A375_MHC_IP_R1	1	407.9292907714844	3	407.863053	1220.56733	-0.063361	-2.5842E-05	0.72476	0.0002956	0.6614	0.00026976	407.86340818491607	20.612	0.45865	20.612	20.283	20.742	0					12	8	2	0	0	0	0.55789	1	5302	5302		15.739	3.5639	1	2954400			8430	9206	6043	6093	8199	8199					-0.03412988949821738
EEDNQKLKHF	10	Unmodified	_EEDNQKLKHF_					0	0	0			REV__nc|ENSG00000166734|Q6P4E1-2|GOLM2	REV__nc|ENSG00000166734|Q6P4E1-2|GOLM2	MSMS	A375_MHC_IP_R2	2	644.4487915039062	2	644.320034	1286.62551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.448	1	72.182	71.682	72.682	0.73421								0	0	0	0.15308	1	27104	27104		10.824	0.75	1		+		8431	27339	6044	6094	8200	8200					-0.006333073045425408
EEDNSRNVFF	10	Unmodified	_EEDNSRNVFF_					0	0	0		ENSG00000166401|ENST00000397985|SERPINB8;nc|ENSG00000166401|P50452-2|SERPINB8	ENSG00000166401|ENST00000397985|SERPINB8	ENSG00000166401|ENST00000397985|SERPINB8	MULTI-MSMS	A375_MHC_IP_R1	1	629.1799926757812	2	628.780741	1255.54693	-0.66313	-0.00041696	0.27112	0.00017047	-0.39202	-0.00024649	628.7808135044645	64.675	0.71253	64.675	64.343	65.055	0					26	13	3	0	0	0	0.084058	1	23371	23371		67.081	41.681	1	5761500			8432	7069	6045	6095	8201	8201					-0.07062159609631635
EEDNSRNVFF	10	Unmodified	_EEDNSRNVFF_					0	0	0		ENSG00000166401|ENST00000397985|SERPINB8;nc|ENSG00000166401|P50452-2|SERPINB8	ENSG00000166401|ENST00000397985|SERPINB8	ENSG00000166401|ENST00000397985|SERPINB8	MULTI-MSMS	A375_MHC_IP_R2	2	629.1802978515625	2	628.780741	1255.54693	-0.74945	-0.00047124	0.29491	0.00018543	-0.45454	-0.00028581	628.7806886636841	63.902	0.76234	64.642	64.292	65.054	0.74022					31	14	4	0	0	0	0.080535	2	24210	24210;24317		67.838	40.209	1	4569300			8433	7069	6045	6095	8202;8203	8202					-0.07062159609631635
EEDPDLAEEL	10	Unmodified	_EEDPDLAEEL_					0	0	0			REV__ENSG00000198920|ENST00000361413|KIAA0753	REV__ENSG00000198920|ENST00000361413|KIAA0753	MSMS	A375_MHC_IP_R1	1	580.1934204101562	2	580.253691	1158.49283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.02	1	38.02	37.52	38.52	0								0	0	0	0.15105	1	12860	12860		15.847	3.3156	1		+		8434	22448	6046	6096	8204	8204					-0.0800779655187398
EEDPFDPPCGY	11	Unmodified	_EEDPFDPPCGY_					0	0	0			REV__nc|ENSG00000133706|Q9P2J5-2|LARS1	REV__nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-MSMS	A375_MHC_IP_R1	1	635.7030029296875	2	634.742436	1267.47032	-0.54027	-0.00034293	0.80319	0.00050982	0.26292	0.00016688	634.7429387699876	88.872	0.50798	88.872	88.561	89.069	0					18	9	3	0	0	0	0.72949	1	32583	32583		9.3831	2.0939	1	1480400	+		8435	18730	6047	6097	8205	8205					-0.15271719221118474
EEDPFGLDKF	10	Unmodified	_EEDPFGLDKF_					0	0	0		ENSG00000100603|ENST00000261531|SNW1	ENSG00000100603|ENST00000261531|SNW1	ENSG00000100603|ENST00000261531|SNW1	MULTI-MSMS	A375_MHC_IP_R2	2	599.17626953125	2	598.777136	1195.53972	-0.39277	-0.00023518	-0.47268	-0.00028303	-0.86544	-0.00051821	598.7767031132751	99.046	1.2708	99.806	99.352	100.62	0.75977					40	24	3	0	0	0	0.027029	3	37511	37511;37541;37562		93.938	34.57	1	5921400			8436	2201	6048	6098	8206;8207;8208	8206					-0.050228922100586715
EEDPHEGKIW	10	Unmodified	_EEDPHEGKIW_					0	0	0		nc|ENSG00000145715|P20936-2|RASA1;nc|ENSG00000145715|P20936-4|RASA1;ENSG00000145715|ENST00000274376|RASA1;nc|ENSG00000145715|P20936-3|RASA1	nc|ENSG00000145715|P20936-2|RASA1	nc|ENSG00000145715|P20936-2|RASA1	MULTI-SECPEP	A375_MHC_IP_R1	1	414.2595520019531	3	413.859532	1238.55677	0.27003	0.00011175	-0.23283	-9.636E-05	0.037194	1.5393E-05	413.8594057112459	34.191	0.80916	34.191	33.95	34.759	0					27	15	3	0	0	0	0.61782	1	11233	11233		36.395	20.656	1	5954800			8437	5572	6049	6099	8209	8209					-0.05296971604229839
EEDPHEGKIW	10	Unmodified	_EEDPHEGKIW_					0	0	0		nc|ENSG00000145715|P20936-2|RASA1;nc|ENSG00000145715|P20936-4|RASA1;ENSG00000145715|ENST00000274376|RASA1;nc|ENSG00000145715|P20936-3|RASA1	nc|ENSG00000145715|P20936-2|RASA1	nc|ENSG00000145715|P20936-2|RASA1	MULTI-SECPEP	A375_MHC_IP_R2	2	414.25970458984375	3	413.859532	1238.55677	-0.39918	-0.00016521	-0.20321	-8.4101E-05	-0.60239	-0.00024931	413.8594654710898	33.52	0.50765	34.272	33.992	34.5	0.75225					23	9	3	0	0	0	0.74263	1	11986	11986		32.898	18.492	1	7330100			8438	5572	6049	6099	8210	8210					-0.05296971604229839
EEDPNIFAY	9	Unmodified	_EEDPNIFAY_					0	0	0		nc|ENSG00000206562|Q8TCB7-2|METTL6;ENSG00000206562|ENST00000383790|METTL6	nc|ENSG00000206562|Q8TCB7-2|METTL6	nc|ENSG00000206562|Q8TCB7-2|METTL6	MULTI-MSMS	A375_MHC_IP_R1	1	549.704345703125	2	549.242929	1096.47131	-0.53796	-0.00029547	-1.5075	-0.00082799	-2.0455	-0.0011235	549.242543261736	99.161	0.91573	99.161	98.507	99.422	0					34	17	3	0	0	0	0.38603	2	36425	36316;36425		25.399	0	1	1728400			8439	9546	6050	6100	8211;8212	8212					-0.07307136789881952
EEDPNIFAY	9	Unmodified	_EEDPNIFAY_					0	0	0		nc|ENSG00000206562|Q8TCB7-2|METTL6;ENSG00000206562|ENST00000383790|METTL6	nc|ENSG00000206562|Q8TCB7-2|METTL6	nc|ENSG00000206562|Q8TCB7-2|METTL6	MULTI-MSMS	A375_MHC_IP_R2	2	549.6425170898438	2	549.242929	1096.47131	-0.74197	-0.00040752	0.78309	0.00043011	0.041123	2.2587E-05	549.243371976304	98.467	0.61098	99.227	98.945	99.556	0.75977					19	11	2	0	0	0	0.44024	1	37383	37383		22.736	0	1	2156800			8440	9546	6050	6100	8213	8213					-0.07307136789881952
EEDPNTHILY	10	Unmodified	_EEDPNTHILY_					0	0	0		nc|ENSG00000116809|Q13105-3|ZBTB17;ENSG00000116809|ENST00000375743|ZBTB17;nc|ENSG00000116809|Q13105-2|ZBTB17	nc|ENSG00000116809|Q13105-3|ZBTB17	nc|ENSG00000116809|Q13105-3|ZBTB17	MULTI-MSMS	A375_MHC_IP_R1	1	616.185302734375	2	615.785492	1229.55643	-0.50659	-0.00031195	0.28928	0.00017813	-0.21731	-0.00013382	615.7856933288434	53.028	1.0641	53.028	52.694	53.758	0					58	20	5	0	0	0	0.011207	1	18831	18831		155.95	108.21	1	73507000			8441	3434	6051	6101	8214	8214					-0.04916391324081815
EEDPNTHILY	10	Unmodified	_EEDPNTHILY_					0	0	0		nc|ENSG00000116809|Q13105-3|ZBTB17;ENSG00000116809|ENST00000375743|ZBTB17;nc|ENSG00000116809|Q13105-2|ZBTB17	nc|ENSG00000116809|Q13105-3|ZBTB17	nc|ENSG00000116809|Q13105-3|ZBTB17	MULTI-MSMS	A375_MHC_IP_R2	2	616.184814453125	2	615.785492	1229.55643	-1.0418	-0.00064154	0.35877	0.00022092	-0.68306	-0.00042062	615.7857425934432	52.408	1.0633	53.16	52.78	53.843	0.75225					64	20	5	0	0	0	0.011756	1	19677	19677		140.63	92.884	1	87748000			8442	3434	6051	6101	8215	8215					-0.04916391324081815
EEDPYICKY	9	Unmodified	_EEDPYICKY_					0	0	0		ENSG00000121864|ENST00000496856|ZNF639	ENSG00000121864|ENST00000496856|ZNF639	ENSG00000121864|ENST00000496856|ZNF639	MULTI-MSMS	A375_MHC_IP_R1	1	580.65185546875	2	580.25244	1158.49033	-0.064534	-3.7446E-05	-0.07954	-4.6153E-05	-0.14407	-8.3599E-05	580.2522172644805	51.501	1.0679	51.501	51.017	52.085	0					34	20	3	0	0	0	0.070818	1	18296	18296		56.177	44.537	1	2001500			8443	3742	6052	6102	8216	8216					-0.08257923490486974
EEDPYICKY	9	Unmodified	_EEDPYICKY_					0	0	0		ENSG00000121864|ENST00000496856|ZNF639	ENSG00000121864|ENST00000496856|ZNF639	ENSG00000121864|ENST00000496856|ZNF639	MULTI-MSMS	A375_MHC_IP_R2	2	580.6519165039062	2	580.25244	1158.49033	-0.39651	-0.00023007	-0.47929	-0.00027811	-0.8758	-0.00050818	580.2519360424676	50.954	1.2145	51.708	51.057	52.272	0.75406					29	23	2	0	0	0	0.22528	1	19171	19171		36.127	24.487	1	2691800			8444	3742	6052	6102	8217	8217					-0.08257923490486974
EEDQAAELRAY	11	Unmodified	_EEDQAAELRAY_					0	0	0		ENSG00000149100|ENST00000531120|EIF3M;ENST00000531186.5_1_11:32605433-32610279:+|nuORF	ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	MULTI-SECPEP	A375_MHC_IP_R1	1	648.1987915039062	2	647.799131	1293.58371	-0.24794	-0.00016062	-0.15771	-0.00010216	-0.40565	-0.00026278	647.7990998312224	42.318	0.65599	42.318	41.982	42.638	0					30	12	3	0	0	0	0.08631	1	14604	14604		70.929	63.827	1	10610000			8445	5782	6053	6103	8218	8218					-0.051339077837155855
EEDQAAELRAY	11	Unmodified	_EEDQAAELRAY_					0	0	0		ENSG00000149100|ENST00000531120|EIF3M;ENST00000531186.5_1_11:32605433-32610279:+|nuORF	ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	MULTI-MSMS	A375_MHC_IP_R2	2	648.1989135742188	2	647.799131	1293.58371	-0.73732	-0.00047764	0.08342	5.4039E-05	-0.6539	-0.0004236	647.7991671958204	41.594	0.66142	42.369	42.047	42.709	0.77451					22	12	2	0	0	0	2.5917E-05	1	15433	15433		142.92	97.219	1	9216300			8446	5782	6053	6103	8219	8219					-0.051339077837155855
EEDQRTYVF	9	Unmodified	_EEDQRTYVF_					0	0	0		ENST00000595700.5_1_19:44242246-44254893:-|nuORF;nc|ENSG00000105771|Q9H0W8-2|SMG9;ENSG00000105771|ENST00000270066|SMG9	ENST00000595700.5_1_19:44242246-44254893:-|nuORF	ENST00000595700.5_1_19:44242246-44254893:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	594.171875	2	593.772385	1185.53022	-0.44178	-0.00026232	0.14507	8.6141E-05	-0.29671	-0.00017618	593.7723960306237	52.516	1.1177	52.516	51.879	52.997	0					42	21	3	0	0	0	0.062502	1	18664	18664		83.429	59.408	1	11327000			8447	2637	6054	6104	8220	8220					-0.05512660495583077
EEDQRTYVF	9	Unmodified	_EEDQRTYVF_					0	0	0		ENST00000595700.5_1_19:44242246-44254893:-|nuORF;nc|ENSG00000105771|Q9H0W8-2|SMG9;ENSG00000105771|ENST00000270066|SMG9	ENST00000595700.5_1_19:44242246-44254893:-|nuORF	ENST00000595700.5_1_19:44242246-44254893:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	594.1723022460938	2	593.772385	1185.53022	-0.86391	-0.00051297	0.23524	0.00013968	-0.62867	-0.00037329	593.7724842451237	51.882	0.96554	52.634	52.169	53.134	0.75225					46	18	4	0	0	0	0.10495	1	19506	19506		74.2	52.663	1	10061000			8448	2637	6054	6104	8221	8221					-0.05512660495583077
EEDREMSCFS	10	Unmodified	_EEDREMSCFS_					0	0	0			REV__nc|ENSG00000138286|Q96BN6-2|FAM149B1	REV__nc|ENSG00000138286|Q96BN6-2|FAM149B1	MULTI-MSMS	A375_MHC_IP_R2	2	617.7891845703125	2	616.731545	1231.44854	-0.64125	-0.00039548	1.3568	0.0008368	0.71558	0.00044132	616.7322019115929	102.35	0.66108	103.11	102.77	103.43	0.76428					30	12	3	0	0	0	0.70793	1	38757	38757		8.7454	1.4562	1	2906700	+		8449	19081	6055	6105	8222	8222					-0.15792847241323216
EEDRKKKAE	9	Unmodified	_EEDRKKKAE_					0	0	0			REV__ENSG00000154479|ENST00000447353|CFAP210	REV__ENSG00000154479|ENST00000447353|CFAP210	MULTI-SECPEP	A375_MHC_IP_R1	1	566.158935546875	2	566.801477	1131.5884	-0.24295	-0.00013771	0.69075	0.00039152	0.44779	0.00025381	567.3026138152343	53.742	0.55817	53.742	53.505	54.063	0					24	10	3	0	0	0	0.74412	1	19288	19288		14.838	8.6325	1	2583300	+		8450	19886	6056	6106	8223	8223					0.02787021149697466
EEDRKVGKLF	10	Unmodified	_EEDRKVGKLF_					0	0	0		nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES;ENST00000485009.1_1_7:115863047-115889401:+|nuORF;ENST00000461440.5_1_7:115850593-115889401:+|nuORF	nc|ENSG00000135269|Q9UGI8-2|TES	nc|ENSG00000135269|Q9UGI8-2|TES	MULTI-MSMS	A375_MHC_IP_R2	2	407.9588623046875	3	407.559305	1219.65609	-0.83732	-0.00034126	0.55907	0.00022785	-0.27825	-0.0001134	407.89411570352195	29.08	0.2487	29.779	29.681	29.93	0.69872					6	4	2	0	0	0	0.52785	1	10177	10177		17.863	6.2318	1	3326100			8451	4662	6057	6107	8224	8224					0.05504471080530493
EEDRVVVIRF	10	Unmodified	_EEDRVVVIRF_					0	0	0		ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	MULTI-MSMS	A375_MHC_IP_R1	1	421.5733642578125	3	421.234822	1260.68264	-0.37251	-0.00015691	0.41853	0.0001763	0.046025	1.9387E-05	421.23498556454496	68.046	0.50519	68.046	67.754	68.26	0					15	9	2	0	0	0	0.59998	1	24677	24677		20.871	16.155	1	1020800			8452	5273	6058	6108	8225	8225					0.0627215997183157
EEDRVVVIRF	10	Unmodified	_EEDRVVVIRF_					0	0	0		ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	MULTI-MSMS	A375_MHC_IP_R2	2	421.6345520019531	3	421.234822	1260.68264	-0.14252	-6.0036E-05	-0.71088	-0.00029945	-0.8534	-0.00035948	421.2344711712242	67.175	0.86383	67.911	67.342	68.205	0.73631					28	16	3	0	0	0	0.51635	1	25485	25485		27.129	19.283	1	1658500			8453	5273	6058	6108	8226	8226					0.0627215997183157
EEDSMANDHHN	11	Unmodified	_EEDSMANDHHN_					0	0	0			REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	MSMS	A375_MHC_IP_R2	2	649.7298583984375	2	649.738748	1297.46294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.729	1	72.463	71.963	72.963	0.73421								0	0	0	0.16108	1	27213	27213		13.042	5.7532	1		+		8454	28309	6059	6109	8227	8227					-0.17389058768821997
EEDSPGLAPDL	11	Unmodified	_EEDSPGLAPDL_					0	0	0			REV__ENSG00000178966|ENST00000445877|RMI1	REV__ENSG00000178966|ENST00000445877|RMI1	MULTI-SECPEP	A375_MHC_IP_R1	1	571.1436157226562	2	571.764226	1141.5139	-0.51289	-0.00029325	0.032583	1.863E-05	-0.4803	-0.00027462	571.7642882514538	26.916	0.45104	26.916	26.677	27.128	0					20	8	3	0	0	0	0.90584	1	8011	8011		22.736	6.5872	1	7387900	+		8455	21529	6060	6110	8228	8228					-0.05119786452314656
EEDSPGLAPDL	11	Unmodified	_EEDSPGLAPDL_					0	0	0			REV__ENSG00000178966|ENST00000445877|RMI1	REV__ENSG00000178966|ENST00000445877|RMI1	MULTI-MATCH	A375_MHC_IP_R2	2		2	571.764226	1141.5139	-0.66746	-0.00038163	-0.035329	-2.02E-05	-0.70279	-0.00040183	571.7642298729211	26.341	0.40534	27.001	26.857	27.262	0.65992	0.04238	-5.4599E-05	NaN	22.736	19	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5861300	+		8456	21529	6060	6110							-0.05119786452314656
EEDSTCESED	10	Unmodified	_EEDSTCESED_					0	0	0			REV__ENSG00000278311|ENST00000613102|GGNBP2	REV__ENSG00000278311|ENST00000613102|GGNBP2	MULTI-SECPEP	A375_MHC_IP_R2	2	572.0082397460938	2	572.185148	1142.35574	-0.26825	-0.00015349	-0.50086	-0.00028659	-0.76911	-0.00044007	572.6875937615666	105.86	0.2041	106.62	106.48	106.68	0.75977					5	3	2	0	0	0	0.94421	1	39980	39980		3.9444	0	1	963710	+		8457	22978	6061	6111	8229	8229					-0.20974073493698597
EEDTAEKDEL	10	Unmodified	_EEDTAEKDEL_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MSMS	A375_MHC_IP_R1	1	590.1563110351562	2	589.756598	1177.49864	-0.35804	-0.00021116	-0.03377	-1.9916E-05	-0.39181	-0.00023107	589.7565303528111	25.434	0.56127	25.434	25.255	25.816	0					15	10	2	0	0	0	0.011669	1	7424	7424		114.19	54.113	1	15964000			8458	1188	6062	6112	8230	8230					-0.08300698040170573
EEDVGPGQISY	11	Unmodified	_EEDVGPGQISY_					0	0	0			REV__ENSG00000129910|ENST00000289746|CDH15	REV__ENSG00000129910|ENST00000289746|CDH15	MSMS	A375_MHC_IP_R2	2	597.2083129882812	2	597.269675	1192.5248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.445	1	87.178	86.678	87.678	0.733								0	0	0	0.14647	1	32875	32875		22.736	9.6938	1		+		8459	18512	6063	6113	8231	8231					-0.06376384078021147
EEDVKSLKKEY	11	Unmodified	_EEDVKSLKKEY_					0	0	0		nc|ENSG00000137275|Q13546-2|RIPK1;ENSG00000137275|ENST00000259808|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	MULTI-MSMS	A375_MHC_IP_R2	2	456.97259521484375	3	456.57328	1366.69801	-0.55866	-0.00025507	-0.58605	-0.00026757	-1.1447	-0.00052264	456.57291322677025	19.777	0.60713	20.388	19.942	20.549	0.61029					17	11	2	0	0	0	0.69246	1	6106	6106		16.137	6.8934	1	1651500			8460	4875	6064	6114	8232	8232					0.02932981978369753
EEDVLLAQY	9	Unmodified	_EEDVLLAQY_					0	0	0			REV__nc|ENSG00000012171|Q13214-2|SEMA3B	REV__nc|ENSG00000012171|Q13214-2|SEMA3B	MULTI-MSMS	A375_MHC_IP_R2	2	540.6845703125	2	540.266404	1078.51826	-0.74397	-0.00040194	-3.1046	-0.0016773	-3.8486	-0.0020792	540.7653910467606	69.07	0.45715	69.805	69.575	70.032	0.73511					13	8	2	0	0	0	0.35581	1	26089	26089		26.884	2.8631	1	1435300	+		8461	16220	6065	6115	8233	8233					-0.017862772387616133
EEDWSRWI	8	Unmodified	_EEDWSRWI_					0	0	0			REV__ENST00000566016.5_1_16:46637844-46655271:-|nuORF	REV__ENST00000566016.5_1_16:46637844-46655271:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	561.1561889648438	2	560.756538	1119.49852	-0.55158	-0.0003093	-0.6951	-0.00038978	-1.2467	-0.00069908	560.7563208413283	64.967	1.1208	64.967	64.495	65.616	0					20	13	2	0	0	0	0.84294	1	23474	23474		24.021	5.8742	1	3542900	+		8462	21054	6066	6116	8234	8234					-0.05644608458851508
EEDYRTLTNY	10	Unmodified	_EEDYRTLTNY_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.R305Afs*2|1|0.44|ENSG00000111642|chr12:6600941-6600942|-/T|frameshift_variant	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	A375_MHC_IP_R2	2	653.44970703125	2	652.293682	1302.57281	-1.0667	-0.00069579	0.2773	0.00018088	-0.78937	-0.0005149	652.2938829647869	51.828	0.45913	52.58	52.321	52.78	0.75225					18	8	3	0	0	0	0.39599	1	19511	19511		34.402	21.529	1	3711600			8463	3005	6067	6117	8235	8235					-0.06637310157975662
EEDYRTLTNY	10	Unmodified	_EEDYRTLTNY_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.R305Afs*2|1|0.44|ENSG00000111642|chr12:6600941-6600942|-/T|frameshift_variant	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MATCH	A375_MHC_IP_R1	1		2	652.293682	1302.57281	-0.37906	-0.00024726	-0.38506	-0.00025117	-0.76412	-0.00049843	652.2931988842593	52.269	0.50757	52.269	51.982	52.49	0	-0.15541	-0.0005529	NaN	34.402	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5067100			8464	3005	6067	6117							-0.06637310157975662
EEEAARLFY	9	Unmodified	_EEEAARLFY_					0	0	0		ENSG00000071575|ENST00000155926|TRIB2	ENSG00000071575|ENST00000155926|TRIB2	ENSG00000071575|ENST00000155926|TRIB2	MULTI-MSMS	A375_MHC_IP_R1	1	564.1942749023438	2	564.272021	1126.52949	-0.70161	-0.0003959	0.29881	0.00016861	-0.4028	-0.00022729	564.2721566370433	67.11	0.6142	67.11	66.785	67.399	0					20	11	2	0	0	0	0.030038	1	24368	24368		74.929	40.827	1	2548900			8465	1515	6068	6118	8236	8236					-0.028714551446228143
EEEAARLFY	9	Unmodified	_EEEAARLFY_					0	0	0		ENSG00000071575|ENST00000155926|TRIB2	ENSG00000071575|ENST00000155926|TRIB2	ENSG00000071575|ENST00000155926|TRIB2	MULTI-SECPEP	A375_MHC_IP_R2	2	564.6719970703125	2	564.272021	1126.52949	-0.64151	-0.00036199	0.47848	0.00027	-0.16303	-9.1992E-05	564.272292228666	66.308	0.66454	67.044	66.78	67.445	0.73631					24	12	3	0	0	0	0.10103	1	25126	25126		71.922	37.82	1	2146800			8466	1515	6068	6118	8237	8237					-0.028714551446228143
EEEAEQLLQL	10	Unmodified	_EEEAEQLLQL_					0	0	0		ENSG00000108506|ENST00000251334|INTS2;nc|ENSG00000108506|Q9H0H0|INTS2	ENSG00000108506|ENST00000251334|INTS2	ENSG00000108506|ENST00000251334|INTS2	MSMS	A375_MHC_IP_R1	1	401.1291809082031	3	401.203076	1200.5874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.589	1	36.589	36.089	37.089	0								0	0	0	0.15353	1	12257	12257		5.4027	0.99656	1				8467	2806	6069	6119	8238	8238					-0.004872380098277063
EEEAKRMSL	9	Unmodified	_EEEAKRMSL_					0	0	0			REV__ENSG00000119681|ENST00000261978|LTBP2	REV__ENSG00000119681|ENST00000261978|LTBP2	MSMS	A375_MHC_IP_R2	2	546.6712646484375	2	546.771331	1091.52811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.297	1	49.054	48.554	49.554	0.75737								0	0	0	0.11922	1	18132	18132		36.127	2.0246	1		+		8468	18082	6070	6120	8239	8239					-0.013994125050203365
EEEAKTTA	8	Unmodified	_EEEAKTTA_					0	0	0		ENSG00000081181|ENST00000261783|ARG2	ENSG00000081181|ENST00000261783|ARG2	ENSG00000081181|ENST00000261783|ARG2	MSMS	A375_MHC_IP_R2	2	439.7734680175781	2	439.708722	877.402892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.684	1	22.304	21.804	22.804	0.61932								0	0	0	0.16876	1	6847	6847		5.7604	0	1				8469	1733	6071	6121	8240	8240					-0.04071381369772098
EEEALAKKF	9	Unmodified	_EEEALAKKF_					0	0	0		ENSG00000106785|ENST00000341469|TRIM14;nc|ENSG00000106785|Q14142-3|TRIM14;nc|ENSG00000106785|Q14142-2|TRIM14	ENSG00000106785|ENST00000341469|TRIM14	ENSG00000106785|ENST00000341469|TRIM14	MULTI-SECPEP	A375_MHC_IP_R1	1	355.9252624511719	3	355.525602	1063.55498	-0.012695	-4.5133E-06	-0.79721	-0.00028343	-0.80991	-0.00028794	355.52544223499666	28.391	0.75804	28.391	27.987	28.745	0					30	14	3	0	0	0	0.53748	1	8748	8748		22.658	12.508	1	7767000			8470	2712	6072	6122	8241	8241					0.025740193777892273
EEEALAKKF	9	Unmodified	_EEEALAKKF_					0	0	0		ENSG00000106785|ENST00000341469|TRIM14;nc|ENSG00000106785|Q14142-3|TRIM14;nc|ENSG00000106785|Q14142-2|TRIM14	ENSG00000106785|ENST00000341469|TRIM14	ENSG00000106785|ENST00000341469|TRIM14	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1841430664062	2	532.784764	1063.55498	-0.63189	-0.00033666	-0.18243	-9.7197E-05	-0.81432	-0.00043386	532.7846382714414	28.372	0.35368	28.372	28.238	28.592	0					15	6	3	0	0	0	0.013591	1	8760	8760		118.07	78.119	1	5198100			8471	2712	6072	6122	8242	8242					0.025740193777892273
EEEALAKKF	9	Unmodified	_EEEALAKKF_					0	0	0		ENSG00000106785|ENST00000341469|TRIM14;nc|ENSG00000106785|Q14142-3|TRIM14;nc|ENSG00000106785|Q14142-2|TRIM14	ENSG00000106785|ENST00000341469|TRIM14	ENSG00000106785|ENST00000341469|TRIM14	MULTI-MSMS	A375_MHC_IP_R2	2	355.92547607421875	3	355.525602	1063.55498	-0.20994	-7.4638E-05	-0.46561	-0.00016554	-0.67555	-0.00024018	355.52549081741057	27.687	0.65927	28.366	27.996	28.655	0.67857					29	12	4	0	0	0	0.1915	1	9506	9506		38.615	24.209	1	6759200			8472	2712	6072	6122	8243	8243					0.025740193777892273
EEEALAKKF	9	Unmodified	_EEEALAKKF_					0	0	0		ENSG00000106785|ENST00000341469|TRIM14;nc|ENSG00000106785|Q14142-3|TRIM14;nc|ENSG00000106785|Q14142-2|TRIM14	ENSG00000106785|ENST00000341469|TRIM14	ENSG00000106785|ENST00000341469|TRIM14	MULTI-SECPEP	A375_MHC_IP_R2	2	533.1843872070312	2	532.784764	1063.55498	-0.71327	-0.00038002	0.0050914	2.7126E-06	-0.70818	-0.00037731	532.7847126888944	27.748	0.45537	28.426	28.2	28.655	0.67857					15	8	3	0	0	0	0.05217	1	9514	9514		89.401	64.001	1	4614900			8473	2712	6072	6122	8244	8244					0.025740193777892273
EEEALASKRF	10	Unmodified	_EEEALASKRF_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;ENST00000497697.5_1_22:31477435-31484100:+|nuORF;ENST00000482444.5_2_22:31483923-31484563:+|nuORF;ENST00000475548.5_1_22:31477435-31484563:+|nuORF	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	MULTI-SECPEP	A375_MHC_IP_R1	1	394.2716979980469	3	393.87166	1178.59315	-0.16283	-6.4134E-05	0.05924	2.3333E-05	-0.10359	-4.0802E-05	393.8716587156827	27.868	0.55412	27.868	27.684	28.238	0					20	10	3	0	0	0	0.4546	1	8520	8520		32.616	21.718	1	7433900			8474	8546	6073	6123	8245	8245					0.01099905292448966
EEEALASKRF	10	Unmodified	_EEEALASKRF_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;ENST00000497697.5_1_22:31477435-31484100:+|nuORF;ENST00000482444.5_2_22:31483923-31484563:+|nuORF;ENST00000475548.5_1_22:31477435-31484563:+|nuORF	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	MULTI-SECPEP	A375_MHC_IP_R1	1	590.703857421875	2	590.303852	1178.59315	-0.51892	-0.00030632	0.27549	0.00016262	-0.24343	-0.0001437	590.3039883897985	27.85	0.3023	27.85	27.735	28.037	0					9	5	2	0	0	0	0.52647	1	8553	8553		47.732	31.583	1	3022400			8475	8546	6073	6123	8246	8246					0.01099905292448966
EEEALASKRF	10	Unmodified	_EEEALASKRF_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;ENST00000497697.5_1_22:31477435-31484100:+|nuORF;ENST00000482444.5_2_22:31483923-31484563:+|nuORF;ENST00000475548.5_1_22:31477435-31484563:+|nuORF	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	MULTI-SECPEP	A375_MHC_IP_R2	2	394.27178955078125	3	393.87166	1178.59315	-0.14102	-5.5545E-05	0.35589	0.00014018	0.21487	8.463E-05	393.87174800281434	27.246	0.40813	27.924	27.741	28.149	0.67857					20	7	3	0	0	0	0.63289	1	9295	9295		30.354	22.877	1	6652200			8476	8546	6073	6123	8247	8247					0.01099905292448966
EEEALASKRF	10	Unmodified	_EEEALASKRF_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;ENST00000497697.5_1_22:31477435-31484100:+|nuORF;ENST00000482444.5_2_22:31483923-31484563:+|nuORF;ENST00000475548.5_1_22:31477435-31484563:+|nuORF	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	MULTI-MATCH	A375_MHC_IP_R2	2		2	590.303852	1178.59315	-0.53817	-0.00031769	-0.14198	-8.3812E-05	-0.68016	-0.0004015	590.3040004638909	27.255	0.30582	27.933	27.741	28.047	0.67857	0.041723	-0.00041957	NaN	47.732	13	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2992300			8477	8546	6073	6123							0.01099905292448966
EEEALPLHQ	9	Unmodified	_EEEALPLHQ_					0	0	0		ENST00000504557.1_1_12:54388684-54396343:+|nuORF	ENST00000504557.1_1_12:54388684-54396343:+|nuORF	ENST00000504557.1_1_12:54388684-54396343:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	533.1843872070312	2	533.264196	1064.51384	-0.80067	-0.00042697	-0.16003	-8.534E-05	-0.9607	-0.00051231	533.2642547813767	27.9	0.50707	28.579	28.351	28.858	0.67857					14	9	2	0	0	0	0.55359	1	9514	9514		28.487	11.545	1	2523400			8478	12821	6074	6124	8248	8248					-0.015837416616705013
EEEALPREPL	10	Unmodified	_EEEALPREPL_					0	0	0		ENST00000240100.6_1_8:29207880-29208030:-|nuORF	ENST00000240100.6_1_8:29207880-29208030:-|nuORF	ENST00000240100.6_1_8:29207880-29208030:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	591.1961059570312	2	591.803685	1181.59282	-0.67224	-0.00039783	0.044226	2.6173E-05	-0.62801	-0.00037166	591.8035875955	30.359	0.65655	30.359	30.15	30.806	0					32	12	3	0	0	0	0.60556	1	9634	9634		20.454	0	1	10905000			8479	10165	6075	6125	8249	8249					0.009284855726036767
EEEALPREPL	10	Unmodified	_EEEALPREPL_					0	0	0		ENST00000240100.6_1_8:29207880-29208030:-|nuORF	ENST00000240100.6_1_8:29207880-29208030:-|nuORF	ENST00000240100.6_1_8:29207880-29208030:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	395.63250732421875	3	394.871549	1181.59282	-0.61151	-0.00024147	0.12854	5.0757E-05	-0.48296	-0.00019071	394.87154288476535	29.785	0.85996	30.483	30.083	30.942	0.69872					49	16	4	0	0	0	0.7212	1	10426	10426		28.234	0	1	26273000			8480	10165	6075	6125	8250	8250					0.009284855726036767
EEEALPREPL	10	Unmodified	_EEEALPREPL_					0	0	0		ENST00000240100.6_1_8:29207880-29208030:-|nuORF	ENST00000240100.6_1_8:29207880-29208030:-|nuORF	ENST00000240100.6_1_8:29207880-29208030:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	592.2023315429688	2	591.803685	1181.59282	-1.0241	-0.00060609	0.015392	9.1091E-06	-1.0087	-0.00059698	591.8035679002713	29.761	0.65541	30.459	30.185	30.84	0.69872					33	12	4	0	0	0	0.91057	1	10390	10390		21.537	0	1	9743000			8481	10165	6075	6125	8251	8251					0.009284855726036767
EEEALQKKF	9	Unmodified	_EEEALQKKF_					0	0	0		ENST00000491139.5_1_6:31924712-31926696:-|nuORF;ENST00000492185.5_1_6:31922795-31926696:-|nuORF;ENST00000488426.5_1_6:31922795-31926316:-|nuORF;ENST00000481121.5_1_6:31921790-31926696:-|nuORF;nc|ENSG00000204356|P18615-4|NELFE;ENSG00000204356|ENST00000375429|NELFE;nc|ENSG00000204356|P18615-3|NELFE	ENST00000491139.5_1_6:31924712-31926696:-|nuORF	ENST00000491139.5_1_6:31924712-31926696:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	561.6947021484375	2	561.295496	1120.57644	-1.0424	-0.00058508	1.9999	0.0011226	0.95757	0.00053748	561.2967566988362	25.199	0.91578	25.842	25.568	26.483	0.64368					40	17	3	0	0	0	0.011066	1	8367	8367		137.42	41.313	1	18680000			8482	9434	6076	6126	8252	8252					0.020974044065042108
EEECNDHI	8	Unmodified	_EEECNDHI_					0	0	0		ENSG00000176635|ENST00000336726|HORMAD2	ENSG00000176635|ENST00000336726|HORMAD2	ENSG00000176635|ENST00000336726|HORMAD2	MULTI-SECPEP	A375_MHC_IP_R1	1	494.11407470703125	2	494.687464	987.360375	-0.36131	-0.00017873	0.58992	0.00029182	0.22861	0.00011309	494.6878051782644	36.122	0.45726	36.122	35.881	36.339	0					11	8	2	0	0	0	0.972	1	12057	12057		5.7604	0	1	1124200			8483	8029	6077	6127	8253	8253					-0.1338109976964006
EEECRVGV	8	Unmodified	_EEECRVGV_					0	0	0			REV__nc|ENSG00000278023|Q8NG50-6|RDM1	REV__nc|ENSG00000278023|Q8NG50-6|RDM1	MULTI-MSMS	A375_MHC_IP_R2	2	460.64898681640625	2	460.710742	919.406931	-0.46371	-0.00021364	1.381	0.00063622	0.91725	0.00042259	460.71155861027364	82.477	0.40508	83.219	82.992	83.397	0.74293					11	7	2	0	0	0	0.7338	1	31364	31364		24.674	7.561	1	905020	+		8484	22975	6078	6128	8254	8254					-0.055996151476847444
EEECRVGV	8	Unmodified	_EEECRVGV_					0	0	0			REV__nc|ENSG00000278023|Q8NG50-6|RDM1	REV__nc|ENSG00000278023|Q8NG50-6|RDM1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	460.710742	919.406931	-0.2338	-0.00010771	2.0599	0.00094903	1.8261	0.00084132	460.71170204147535	83.303	0.5593	83.303	82.974	83.533	0	0.041953	9.2194E-05	NaN	24.674	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1409500	+		8485	22975	6078	6128							-0.055996151476847444
EEECRVGV	8	Unmodified	_EEECRVGV_					0	0	0			REV__nc|ENSG00000278023|Q8NG50-6|RDM1	REV__nc|ENSG00000278023|Q8NG50-6|RDM1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	460.710742	919.406931	-0.46371	-0.00021364	1.381	0.00063622	0.91725	0.00042259	460.71155861027364	82.477	0.40508	83.219	82.992	83.397	0.74293	-0.041953	-0.00053342	NaN	24.674	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	905020	+		8486	22975	6078	6128							-0.055996151476847444
EEEDDEDDSD	10	Unmodified	_EEEDDEDDSD_					0	0	0			REV__ENSG00000134323|ENST00000281043|MYCN	REV__ENSG00000134323|ENST00000281043|MYCN	MULTI-SECPEP	A375_MHC_IP_R1	1	1197.8997802734375	1	1197.35496	1196.34768	-0.25332	-0.00030331	-0.028215	-3.3783E-05	-0.28153	-0.0003371	1198.3576616004414	132.03	0.2007	132.03	131.93	132.13	0					5	3	2	0	0	0	0.95069	1	50925	50925		0	0	1	2119300	+		8487	18771	6079	6129	8255	8255					-0.2426392920951912
EEEDDEYM	8	Unmodified	_EEEDDEYM_					0	0	0			REV__nc|ENSG00000258947|Q13509-2|TUBB3	REV__nc|ENSG00000258947|Q13509-2|TUBB3	MULTI-SECPEP	A375_MHC_IP_R1	1	1059.728759765625	1	1059.34591	1058.33864	0.11131	0.00011792	2.5722	0.0027248	2.6835	0.0028427	1060.3506681594788	119.14	0.65897	119.14	118.58	119.23	0					14	12	2	0	0	0	0.972	1	44030	44030		2.3027	1.6124	1	26157000	+		8488	22901	6080	6130	8256	8256					-0.18819949308885953
EEEDDEYM	8	Unmodified	_EEEDDEYM_					0	0	0			REV__nc|ENSG00000258947|Q13509-2|TUBB3	REV__nc|ENSG00000258947|Q13509-2|TUBB3	MULTI-MATCH	A375_MHC_IP_R2	2		1	1059.34591	1058.33864	0.16816	0.00017814	-2.4433	-0.0025883	-2.2751	-0.0024102	1060.3422082562138	118.13	0.15144	118.74	118.64	118.8	0.60909	-0.19877	-0.0041681	NaN	2.3027	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7198200	+		8489	22901	6080	6130							-0.18819949308885953
EEEDDSDVDY	10	Unmodified	_EEEDDSDVDY_					0	0	0		SOX5|p.P746S|1|0.12|ENSG00000134532|chr12:23534275-23534275|G/A|missense_variant	SOX5|p.P746S|1|0.12|ENSG00000134532|chr12:23534275-23534275|G/A|missense_variant	SOX5|p.P746S|1|0.12|ENSG00000134532|chr12:23534275-23534275|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	608.2022705078125	2	608.21222	1214.40989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.24	1	72.24	71.74	72.74	0								0	0	0	0.1552	1	26276	26276		3.9444	1.8846	1				8490	29224	6081	6131	8257	8257					-0.18874158070480007
EEEDDSDVDY	10	Unmodified	_EEEDDSDVDY_					0	0	0		SOX5|p.P746S|1|0.12|ENSG00000134532|chr12:23534275-23534275|G/A|missense_variant	SOX5|p.P746S|1|0.12|ENSG00000134532|chr12:23534275-23534275|G/A|missense_variant	SOX5|p.P746S|1|0.12|ENSG00000134532|chr12:23534275-23534275|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	608.1878051757812	2	608.21222	1214.40989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.93	1	72.93	72.43	73.43	0								0	0	0	0.14862	1	26543	26543		20.454	7.9221	1				8491	29224	6081	6131	8258	8258					-0.18874158070480007
EEEDDSDVDY	10	Unmodified	_EEEDDSDVDY_					0	0	0		SOX5|p.P746S|1|0.12|ENSG00000134532|chr12:23534275-23534275|G/A|missense_variant	SOX5|p.P746S|1|0.12|ENSG00000134532|chr12:23534275-23534275|G/A|missense_variant	SOX5|p.P746S|1|0.12|ENSG00000134532|chr12:23534275-23534275|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	608.218505859375	2	608.21222	1214.40989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.485	1	74.485	73.985	74.985	0								0	0	0	0.1552	1	27130	27130		3.9444	1.8846	1				8492	29224	6081	6131	8259	8259					-0.18874158070480007
EEEDLLDQFY	10	Unmodified	_EEEDLLDQFY_					0	0	0			REV__ENSG00000111670|ENST00000299314|GNPTAB	REV__ENSG00000111670|ENST00000299314|GNPTAB	MULTI-MSMS	A375_MHC_IP_R2	2	434.5904541015625	3	434.190836	1299.55068	-0.30943	-0.00013435	0.16119	6.9989E-05	-0.14823	-6.4361E-05	434.1906345021439	32.568	0.71179	33.304	33.01	33.722	0.73691					34	13	3	0	0	0	0.72061	1	11671	11671		3.0723	0	1	13727000	+		8493	17684	6082	6132	8260	8260					-0.0871153462642269
EEEDLLPTRP	10	Unmodified	_EEEDLLPTRP_					0	0	0			REV__nc|ENSG00000058668|P23634-7|ATP2B4	REV__nc|ENSG00000058668|P23634-7|ATP2B4	MULTI-MSMS	A375_MHC_IP_R2	2	399.9312744140625	3	400.203187	1197.58773	-0.47617	-0.00019056	0.23677	9.4755E-05	-0.2394	-9.581E-05	400.20323692910523	29.856	1.011	30.555	30.134	31.145	0.69872					54	19	4	0	0	0	0.62871	1	10435	10435		18.721	1.6726	1	27713000	+		8494	16435	6083	6133	8261	8261					-0.0031581829000515427
EEEDPRPFP	9	Unmodified	_EEEDPRPFP_					0	0	0		CDH26|p.G69R|1|0.35|ENSG00000124215|chr20:59970160-59970160|G/A|missense_variant	CDH26|p.G69R|1|0.35|ENSG00000124215|chr20:59970160-59970160|G/A|missense_variant	CDH26|p.G69R|1|0.35|ENSG00000124215|chr20:59970160-59970160|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	558.1929931640625	2	558.253828	1114.4931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.023	1	74.761	74.261	75.261	0.73752								0	0	0	0.15486	1	28095	28095		13.508	0.97634	1				8495	346	6084	6134	8262	8262					-0.05956332041341739
EEEDTLYDY	9	Unmodified	_EEEDTLYDY_					0	0	0			REV__ENST00000593079.1_1_17:42392127-42392978:+|nuORF	REV__ENST00000593079.1_1_17:42392127-42392978:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	588.706298828125	2	588.732591	1175.45063	-0.4838	-0.00028483	0.60724	0.0003575	0.12344	7.2673E-05	588.7334071034874	52.901	0.55634	52.901	52.643	53.199	0					24	10	3	0	0	0	0.68216	1	18835	18835		8.5933	2.3875	1	3315400	+		8496	17522	6085	6135	8263	8263					-0.13007771960246828
EEEDTLYDY	9	Unmodified	_EEEDTLYDY_					0	0	0			REV__ENST00000593079.1_1_17:42392127-42392978:+|nuORF	REV__ENST00000593079.1_1_17:42392127-42392978:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	589.1326293945312	2	588.732591	1175.45063	-0.92784	-0.00054625	0.6991	0.00041158	-0.22874	-0.00013467	588.7332845528609	52.125	0.50862	52.878	52.626	53.134	0.75225					15	9	2	0	0	0	0.68216	2	19646	19646;19698		8.5933	1.8701	1	2751000	+		8497	17522	6085	6135	8264;8265	8264					-0.13007771960246828
EEEEAEMDSD	10	Unmodified	_EEEEAEMDSD_					0	0	0			REV__ENST00000507611.1_1_4:121739497-121742479:-|nuORF	REV__ENST00000507611.1_1_4:121739497-121742479:-|nuORF	MSMS	A375_MHC_IP_R2	2	592.2149047851562	2	592.200798	1182.38704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.657	1	96.407	95.907	96.907	0.75045								0	0	0	0.15531	1	36332	36332		3.5965	0	1		+		8498	19115	6086	6136	8266	8266					-0.19685500459627292
EEEEALQKKF	10	Unmodified	_EEEEALQKKF_					0	0	0		ENST00000491139.5_1_6:31924712-31926696:-|nuORF;ENST00000492185.5_1_6:31922795-31926696:-|nuORF;ENST00000488426.5_1_6:31922795-31926316:-|nuORF;ENST00000481121.5_1_6:31921790-31926696:-|nuORF;nc|ENSG00000204356|P18615-4|NELFE;ENSG00000204356|ENST00000375429|NELFE;nc|ENSG00000204356|P18615-3|NELFE	ENST00000491139.5_1_6:31924712-31926696:-|nuORF	ENST00000491139.5_1_6:31924712-31926696:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	417.9468078613281	3	417.546954	1249.61903	0.20889	8.722E-05	-0.68678	-0.00028676	-0.4779	-0.00019954	417.5465536276708	28.415	0.90852	28.415	27.887	28.795	0					30	17	3	0	0	0	0.58856	1	8790	8790		30.431	20.667	1	10394000			8499	9434	6087	6137	8267	8267					0.00420754744095575
EEEEALQKKF	10	Unmodified	_EEEEALQKKF_					0	0	0		ENST00000491139.5_1_6:31924712-31926696:-|nuORF;ENST00000492185.5_1_6:31922795-31926696:-|nuORF;ENST00000488426.5_1_6:31922795-31926316:-|nuORF;ENST00000481121.5_1_6:31921790-31926696:-|nuORF;nc|ENSG00000204356|P18615-4|NELFE;ENSG00000204356|ENST00000375429|NELFE;nc|ENSG00000204356|P18615-3|NELFE	ENST00000491139.5_1_6:31924712-31926696:-|nuORF	ENST00000491139.5_1_6:31924712-31926696:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	417.94647216796875	3	417.546954	1249.61903	-0.05665	-2.3654E-05	-1.0402	-0.00043432	-1.0968	-0.00045797	417.546432941177	27.799	0.60762	28.477	28.149	28.757	0.67857					25	11	3	0	0	0	0.026214	1	9525	9525		83.278	31.79	1	10441000			8500	9434	6087	6137	8268	8268					0.00420754744095575
EEEEALQKKF	10	Unmodified	_EEEEALQKKF_					0	0	0		ENST00000491139.5_1_6:31924712-31926696:-|nuORF;ENST00000492185.5_1_6:31922795-31926696:-|nuORF;ENST00000488426.5_1_6:31922795-31926316:-|nuORF;ENST00000481121.5_1_6:31921790-31926696:-|nuORF;nc|ENSG00000204356|P18615-4|NELFE;ENSG00000204356|ENST00000375429|NELFE;nc|ENSG00000204356|P18615-3|NELFE	ENST00000491139.5_1_6:31924712-31926696:-|nuORF	ENST00000491139.5_1_6:31924712-31926696:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	626.2164306640625	2	625.816793	1249.61903	-0.80853	-0.00050599	-0.27157	-0.00016995	-1.0801	-0.00067595	625.8162930533633	27.776	0.40442	28.455	28.251	28.655	0.67857					12	7	2	0	0	0	0.02701	1	9559	9559		151.48	103.89	1	2715000			8501	9434	6087	6137	8269	8269					0.00420754744095575
EEEEALQKKF	10	Unmodified	_EEEEALQKKF_					0	0	0		ENST00000491139.5_1_6:31924712-31926696:-|nuORF;ENST00000492185.5_1_6:31922795-31926696:-|nuORF;ENST00000488426.5_1_6:31922795-31926316:-|nuORF;ENST00000481121.5_1_6:31921790-31926696:-|nuORF;nc|ENSG00000204356|P18615-4|NELFE;ENSG00000204356|ENST00000375429|NELFE;nc|ENSG00000204356|P18615-3|NELFE	ENST00000491139.5_1_6:31924712-31926696:-|nuORF	ENST00000491139.5_1_6:31924712-31926696:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	625.816793	1249.61903	-0.53944	-0.00033759	-0.020817	-1.3027E-05	-0.56025	-0.00035062	625.8167155679799	28.397	0.25289	28.397	28.288	28.541	0	-0.029016	9.0375E-05	NaN	151.48	11	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2123800			8502	9434	6087	6137							0.00420754744095575
EEEEDDDLELF	11	Unmodified	_EEEEDDDLELF_					0	0	0		nc|ENSG00000100395|Q969R5-2|L3MBTL2;nc|ENSG00000100395|Q969R5-3|L3MBTL2;ENST00000466589.5_1_22:41601366-41623356:+|nuORF;ENSG00000100395|ENST00000216237|L3MBTL2;ENST00000479978.5_1_22:41601366-41613299:+|nuORF;ENST00000481902.5_1_22:41601366-41609868:+|nuORF;ENST00000449635.5_1_22:41605720-41615433:+|nuORF	nc|ENSG00000100395|Q969R5-2|L3MBTL2	nc|ENSG00000100395|Q969R5-2|L3MBTL2	MSMS	A375_MHC_IP_R2	2	691.7738037109375	2	691.777727	1381.5409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.828	1	86.564	86.064	87.064	0.73601								0	0	0	0.1629	1	32635	32635		3.5965	0.31518	1				8503	2173	6088	6138	8270	8270					-0.13460767422475328
EEEEDDNNEG	10	Unmodified	_EEEEDDNNEG_					0	0	0		ENST00000488719.1_1_22:30975009-30975285:-|nuORF;nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1	ENST00000488719.1_1_22:30975009-30975285:-|nuORF	ENST00000488719.1_1_22:30975009-30975285:-|nuORF	MSMS	A375_MHC_IP_R2	2	590.1843872070312	2	590.199644	1178.38473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.331	1	70.065	69.565	70.565	0.73421								0	0	0	0.1552	1	26273	26273		3.9444	0	1				8504	2104	6089	6139	8271	8271					-0.19732212873077515
EEEEDELPE	9	Unmodified	_EEEEDELPE_					0	0	0			REV__NCAPG2|p.P590L|1|0.47|ENSG00000146918|chr7:158664230-158664230|G/A|missense_variant	REV__NCAPG2|p.P590L|1|0.47|ENSG00000146918|chr7:158664230-158664230|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	559.7036743164062	2	559.722224	1117.42989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.861	1	44.63	44.13	45.13	0.7691								0	0	0	0.14905	1	16356	16356		23.148	6.2061	1		+		8505	27580	6090	6140	8272	8272					-0.12412362339887295
EEEEDKESLE	10	Unmodified	_EEEEDKESLE_					0	0	0		HYDIN|p.E1980K|2|0.27|ENSG00000157423|chr16:70961989-70961989|C/T|missense_variant	HYDIN|p.E1980K|2|0.27|ENSG00000157423|chr16:70961989-70961989|C/T|missense_variant	HYDIN|p.E1980K|2|0.27|ENSG00000157423|chr16:70961989-70961989|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	618.75537109375	2	618.759337	1235.50412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.86	1	113.86	113.36	114.36	0								0	0	0	0.14925	1	41739	41739		19.257	4.4187	1				8506	14141	6091	6141	8273	8273					-0.10421019248360608
EEEEDWYQEF	10	Unmodified	_EEEEDWYQEF_					0	0	0			REV__ENSG00000165494|ENST00000690938|PCF11	REV__ENSG00000165494|ENST00000690938|PCF11	MULTI-SECPEP	A375_MHC_IP_R2	2	468.65057373046875	3	468.513979	1402.52011	-0.80771	-0.00037842	0.06439	3.0168E-05	-0.74332	-0.00034826	468.51392556119737	37.756	0.5126	38.53	38.279	38.791	0.77451					15	9	2	0	0	0	0.94269	1	13868	13868		5.7834	2.7112	1	2116200	+		8507	20587	6092	6142	8274	8274					-0.16505313011475664
EEEEEDSESP	10	Unmodified	_EEEEEDSESP_					0	0	0			REV__ENSG00000178662|ENST00000651982|CSRNP3	REV__ENSG00000178662|ENST00000651982|CSRNP3	MULTI-MSMS	A375_MHC_IP_R2	2	590.611572265625	2	590.21222	1178.40989	-1.3643	-0.00080525	0.86594	0.00051109	-0.4984	-0.00029416	590.2126150437366	28.938	0.39646	29.637	29.534	29.93	0.69872					10	7	2	0	0	0	0.71361	1	10106	10106		6.2058	1.8765	1	11797000	+		8508	21512	6093	6143	8275	8275					-0.17218158070500067
EEEEEEAQDP	10	Unmodified	_EEEEEEAQDP_					0	0	0		IL17RA|p.E818A|1|0.42|ENSG00000177663|chr22:17109672-17109672|A/C|missense_variant	IL17RA|p.E818A|1|0.42|ENSG00000177663|chr22:17109672-17109672|A/C|missense_variant	IL17RA|p.E818A|1|0.42|ENSG00000177663|chr22:17109672-17109672|A/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	602.280517578125	2	602.728037	1203.44152	-0.39482	-0.00023797	-0.72325	-0.00043592	-1.1181	-0.00067389	602.7276775866751	92.678	1.065	93.417	92.987	94.053	0.73902					32	20	2	0	0	0	0.94102	1	35259	35259		2.9952	0	1	4809700			8509	14150	6094	6144	8276	8276					-0.15206165316567422
EEEEEETA	8	Unmodified	_EEEEEETA_					0	0	0		nc|ENSG00000166963|P78559-2|MAP1A;ENSG00000166963|ENST00000300231|MAP1A;ENSG00000159335|ENST00000309083|PTMS;nc|ENSG00000120645|Q9UPP2-2|IQSEC3;ENSG00000120645|ENST00000538872|IQSEC3	nc|ENSG00000166963|P78559-2|MAP1A;nc|ENSG00000120645|Q9UPP2-2|IQSEC3;REV__nc|ENSG00000182606|Q9UPV9-2|TRAK1	nc|ENSG00000166963|P78559-2|MAP1A	MULTI-SECPEP	A375_MHC_IP_R1	1	964.884765625	1	965.358192	964.350916	0.38557	0.00037221	1.6686	0.0016108	2.0541	0.001983	965.361074467724	116.62	0.50897	116.62	116.29	116.8	0					11	9	2	0	0	0	0.69059	1	42662	42662		46.921	0	1	12706000			8510	7142;3670;27396	6095	6145	8277	8277					-0.13268589574170164
EEEEEETPF	9	Unmodified	_EEEEEETPF_					0	0	0			REV__nc|ENSG00000225830|P0DP91|ERCC6	REV__nc|ENSG00000225830|P0DP91|ERCC6	MULTI-MSMS	A375_MHC_IP_R2	2	570.1998291015625	2	569.724766	1137.43498	-0.2728	-0.00015542	0.96395	0.00054919	0.69116	0.00039377	569.7253300617149	63.315	0.86316	64.056	63.531	64.394	0.74022					35	16	3	0	0	0	0.68216	2	23854	23854;23965		8.5933	2.3875	1	1758200	+		8511	27503	6096	6146	8278;8279	8278					-0.12824058477281142
EEEEEETPF	9	Unmodified	_EEEEEETPF_					0	0	0			REV__nc|ENSG00000225830|P0DP91|ERCC6	REV__nc|ENSG00000225830|P0DP91|ERCC6	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	569.724766	1137.43498	-0.30195	-0.00017203	0.96827	0.00055165	0.66632	0.00037962	569.7252596948435	63.864	0.86539	63.864	63.427	64.292	0	-0.095561	1.5941E-06	NaN	8.5933	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2113000	+		8512	27503	6096	6146							-0.12824058477281142
EEEEEKGNAQP	11	Unmodified	_EEEEEKGNAQP_					0	0	0			REV__ENSG00000146216|ENST00000259750|TTBK1	REV__ENSG00000146216|ENST00000259750|TTBK1	MSMS	A375_MHC_IP_R1	1	630.3779296875	2	630.272946	1258.53134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.69	1	113.69	113.19	114.19	0								0	0	0	0.16108	1	41674	41674		13.042	2.2185	1		+		8513	19522	6097	6147	8280	8280					-0.08758490917330164
EEEEEMEDE	9	Unmodified	_EEEEEMEDE_					0	0	0			REV__ENST00000526955.1_1_11:125281302-125301285:+|nuORF	REV__ENST00000526955.1_1_11:125281302-125301285:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1168.6864013671875	1	1168.38342	1167.37614	-0.28258	-0.00033016	-3.1954	-0.0037334	-3.478	-0.0040636	1168.3770366550164	120.93	0.40543	120.93	120.7	121.11	0					14	7	3	0	0	0	0.65246	1	44946	44946		21.747	4.8044	1	150540000	+		8514	20588	6098	6148	8281	8281					-0.2008490283392348
EEEEEVAK	8	Unmodified	_EEEEEVAK_					0	0	0		nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A	nc|ENSG00000198604|Q9NRL2-2|BAZ1A	nc|ENSG00000198604|Q9NRL2-2|BAZ1A	MSMS	A375_MHC_IP_R1	1	481.6764221191406	2	481.719287	961.424021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.35	1	25.35	24.85	25.85	0								0	0	0	0.16876	1	7386	7386		9.3474	0	1				8515	9290	6099	6149	8282	8282					-0.05823416060900399
EEEEEWFY	8	Unmodified	_EEEEEWFY_					0	0	0			REV__nc|ENSG00000114631|Q9NZ53-2|PODXL2	REV__nc|ENSG00000114631|Q9NZ53-2|PODXL2	MULTI-MSMS	A375_MHC_IP_R1	1	581.1243896484375	2	580.724569	1159.43459	-0.045061	-2.6168E-05	-0.34842	-0.00020233	-0.39348	-0.0002285	580.7242977035087	42.547	0.80975	42.547	42.233	43.043	0					24	15	2	0	0	0	0.75322	1	14845	14845		19.439	4.6007	1	1896500	+		8516	17831	6100	6150	8283	8283					-0.13875433406474258
EEEEEWFY	8	Unmodified	_EEEEEWFY_					0	0	0			REV__nc|ENSG00000114631|Q9NZ53-2|PODXL2	REV__nc|ENSG00000114631|Q9NZ53-2|PODXL2	MULTI-MSMS	A375_MHC_IP_R2	2	581.1244506835938	2	580.724569	1159.43459	-0.28557	-0.00016583	-0.50666	-0.00029423	-0.79222	-0.00046006	580.7242123797329	41.895	0.86899	42.67	42.3	43.169	0.77451					24	16	2	0	0	0	0.77123	1	15609	15609		14.582	4.5078	1	2303200	+		8517	17831	6100	6150	8284	8284					-0.13875433406474258
EEEEEWFY	8	Unmodified	_EEEEEWFY_					0	0	0			REV__nc|ENSG00000114631|Q9NZ53-2|PODXL2	REV__nc|ENSG00000114631|Q9NZ53-2|PODXL2	MULTI-SECPEP	A375_MHC_IP_R2	2	581.201416015625	2	580.724569	1159.43459	-0.28557	-0.00016583	-0.50666	-0.00029423	-0.79222	-0.00046006	580.7242123797329	41.895	0.86899	42.67	42.3	43.169	0.77451					24	16	2	0	0	0	0.972	1	15726	15726		10.183	0.80027	1	2303200	+		8518	17831	6100	6150	8285	8285					-0.13875433406474258
EEEEGQRFY	9	Unmodified	_EEEEGQRFY_					0	0	0		nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MULTI-MSMS	A375_MHC_IP_R2	2	593.6692504882812	2	593.754192	1185.49383	-0.6824	-0.00040518	1.0361	0.00061518	0.35369	0.00021	593.75498348898	33.062	0.96805	33.814	33.178	34.146	0.75225					23	18	2	0	0	0	0.55471	1	11684	11684		17.113	10.39	1	4360600			8519	1899	6101	6151	8286	8286					-0.09149537392272578
EEEELKPYT	9	Unmodified	_EEEELKPYT_					0	0	0		nc|ENSG00000116141|Q9P0L2-2|MARK1;nc|ENSG00000116141|Q9P0L2-3|MARK1;ENSG00000116141|ENST00000366917|MARK1	nc|ENSG00000116141|Q9P0L2-2|MARK1	nc|ENSG00000116141|Q9P0L2-2|MARK1	MSMS	A375_MHC_IP_R2	2	569.2315063476562	2	569.269144	1136.52373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.064	1	43.836	43.336	44.336	0.7724								0	0	0	0.15486	1	16034	16034		12.532	0	1				8520	3375	6102	6152	8287	8287					-0.03906598446951648
EEEELQQK	8	Unmodified	_EEEELQQK_					0	0	0			REV__ENSG00000168724|ENST00000648817|DNAJC21	REV__ENSG00000168724|ENST00000648817|DNAJC21	MULTI-SECPEP	A375_MHC_IP_R2	2	1032.482421875	1	1032.4844	1031.47712	0.15024	0.00015512	-4.3138	-0.004454	-4.1636	-0.0042989	1033.481207581114	109.59	0.50524	110.33	110.03	110.54	0.74683					14	9	2	0	0	0	0.78043	1	41424	41424		32.117	3.6301	1	1751800	+		8521	20880	6103	6153	8288	8288					-0.03736038278248088
EEEEMEEY	8	Unmodified	_EEEEMEEY_					0	0	0			REV__ENSG00000110429|ENST00000265651|FBXO3	REV__ENSG00000110429|ENST00000265651|FBXO3	MSMS	A375_MHC_IP_R2	2	544.1810913085938	2	544.192245	1086.36994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.895	1	63.638	63.138	64.138	0.74263								0	0	0	0.16876	1	23845	23845		10.183	2.2732	1		+		8522	17627	6104	6154	8289	8289					-0.16979376274753122
EEEEMPIPD	9	Unmodified	_EEEEMPIPD_					0	0	0			REV__tr|U7T3I8|U7T3I8_FUSNUTranscriptiontermination/antiterminationproteinNusGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusGPE=3SV=1	REV__tr|U7T3I8|U7T3I8_FUSNUTranscriptiontermination/antiterminationproteinNusGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusGPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	1088.4150390625	1	1088.44523	1087.43796	0.11052	0.0001203	1.3786	0.0015005	1.4891	0.0016208	1089.4497225423731	124.14	0.25425	124.47	124.34	124.6	0.32969					6	4	2	0	0	0	0.32899	1	47960	47960		28.487	5.3384	1	24166000	+		8523	28775	6105	6155	8290	8290					-0.10226506624098874
EEEENNNTDY	10	Unmodified	_EEEENNNTDY_					0	0	0			REV__nc|ENSG00000104728|O15013-7|ARHGEF10	REV__nc|ENSG00000104728|O15013-7|ARHGEF10	MSMS	A375_MHC_IP_R2	2	628.7008666992188	2	628.731111	1255.44767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.825	1	72.559	72.059	73.059	0.73421								0	0	0	0.15158	1	27252	27252		14.838	5.4551	1		+		8524	17333	6106	6156	8291	8291					-0.1698364708504414
EEEENSCTY	9	Unmodified	_EEEENSCTY_					0	0	0		ENSG00000165724|ENST00000298585|ZMYND19	ENSG00000165724|ENST00000298585|ZMYND19	ENSG00000165724|ENST00000298585|ZMYND19	MULTI-SECPEP	A375_MHC_IP_R1	1	551.6423950195312	2	552.195319	1102.37608	-0.55957	-0.00030899	0.90772	0.00050124	0.34816	0.00019225	552.69703613853	60.558	0.50911	60.558	60.312	60.821	0					19	9	3	0	0	0	0.77834	1	21713	21713		8.5933	0.68312	1	2170400			8525	6984	6107	6157	8292	8292					-0.17100858043227163
EEEEPQPDD	9	Unmodified	_EEEEPQPDD_					0	0	0			REV__CHD1|p.V263D|1|0.44|ENSG00000153922|chr5:98900882-98900882|A/T|missense_variant	REV__CHD1|p.V263D|1|0.44|ENSG00000153922|chr5:98900882-98900882|A/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	1088.4671630859375	1	1087.4062	1086.39893	0.11492	0.00012496	-1.7203	-0.0018707	-1.6054	-0.0017457	1087.4081801544764	124.5	0.50314	124.83	124.65	125.15	0.32969					12	9	2	0	0	0	0.2264	1	48218	48218		36.044	10.645	1	18247000	+		8526	15658	6108	6158	8293	8293					-0.14081515654129362
EEEEPQPDD	9	Unmodified	_EEEEPQPDD_					0	0	0			REV__CHD1|p.V263D|1|0.44|ENSG00000153922|chr5:98900882-98900882|A/T|missense_variant	REV__CHD1|p.V263D|1|0.44|ENSG00000153922|chr5:98900882-98900882|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	1087.9141845703125	1	1087.4062	1086.39893	0.11492	0.00012496	-1.7203	-0.0018707	-1.6054	-0.0017457	1087.4081801544764	124.5	0.50314	124.83	124.65	125.15	0.32969					12	9	2	0	0	0	0.43707	1	48107	48107		36.044	14.298	1	18247000	+		8527	15658	6108	6158	8294	8294					-0.14081515654129362
EEEEPTPH	8	Unmodified	_EEEEPTPH_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2	REV__ENSG00000181555|ENST00000409792|SETD2	MULTI-SECPEP	A375_MHC_IP_R1	1	968.1395263671875	1	967.400332	966.393055	-0.33547	-0.00032453	-0.24986	-0.00024171	-0.58532	-0.00056624	967.4030502213232	122.03	0.60823	122.03	121.67	122.28	0					15	11	2	0	0	0	0.972	1	45453	45453		5.7604	1.0044	1	23686000	+		8528	21657	6109	6159	8295	8295					-0.09148569375133775
EEEEPVKEAP	10	Unmodified	_EEEEPVKEAP_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	A375_MHC_IP_R1	1	1156.6927490234375	1	1156.53683	1155.52955	0.25864	0.00029913	-1.7007	-0.0019669	-1.442	-0.0016678	1156.53698751575	111.81	0.25645	111.81	111.72	111.98	0					7	4	2	0	0	0	0.43117	1	40992	40992		32.305	9.1571	1	2047800			8529	3266	6110	6160	8296	8296					-0.04199499935270978
EEEESFADDLH	11	Unmodified	_EEEESFADDLH_					0	0	0			REV__ENSG00000204186|ENST00000374423|ZDBF2	REV__ENSG00000204186|ENST00000374423|ZDBF2	MULTI-SECPEP	A375_MHC_IP_R1	1	441.2460021972656	3	440.845728	1319.51536	0.0012446	5.4866E-07	0.3761	0.0001658	0.37734	0.00016635	440.8458970476217	62.368	0.66525	62.368	62.046	62.711	0					28	12	4	0	0	0	0.98748	1	22544	22544		7.0371	4.4058	1	3524100	+		8530	22495	6111	6161	8297	8297					-0.13162197154224486
EEEESFADDLH	11	Unmodified	_EEEESFADDLH_					0	0	0			REV__ENSG00000204186|ENST00000374423|ZDBF2	REV__ENSG00000204186|ENST00000374423|ZDBF2	MULTI-SECPEP	A375_MHC_IP_R2	2	441.2458801269531	3	440.845728	1319.51536	-0.63356	-0.0002793	0.59591	0.00026271	-0.03765	-1.6598E-05	440.84592137909084	61.762	0.55385	62.505	62.27	62.824	0.74263					23	10	3	0	0	0	0.98748	1	23416	23416		10.315	7.684	1	2972900	+		8531	22495	6111	6161	8298	8298					-0.13162197154224486
EEEESFADDLH	11	Unmodified	_EEEESFADDLH_					0	0	0			REV__ENSG00000204186|ENST00000374423|ZDBF2	REV__ENSG00000204186|ENST00000374423|ZDBF2	MULTI-SECPEP	A375_MHC_IP_R2	2	660.5003051757812	2	660.764954	1319.51536	-1.1835	-0.00078205	-0.097832	-6.4644E-05	-1.2814	-0.00084669	660.764818129574	61.753	0.55461	62.496	62.319	62.874	0.74263					13	10	2	0	0	0	0.9754	1	23368	23368		8.1555	4.8742	1	1795100	+		8532	22495	6111	6161	8299	8299					-0.13162197154224486
EEEESQEEDGD	11	Unmodified	_EEEESQEEDGD_					0	0	0		nc|ENSG00000119778|Q9ULI0-2|ATAD2B;ENSG00000119778|ENST00000238789|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MSMS	A375_MHC_IP_R1	1	648.1859741210938	2	648.223316	1294.43208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.21	1	100.21	99.714	100.71	0								0	0	0	0.16249	1	36831	36831		5.7319	0	1				8533	3622	6112	6162	8300	8300					-0.2033597839272261
EEEETARYN	9	Unmodified	_EEEETARYN_					0	0	0			REV__GIMAP8|p.G405E|1|0.43|ENSG00000171115|chr7:150474543-150474543|G/A|missense_variant	REV__GIMAP8|p.G405E|1|0.43|ENSG00000171115|chr7:150474543-150474543|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	571.1436157226562	2	570.743825	1139.4731	-0.61303	-0.00034988	0.15958	9.1078E-05	-0.45345	-0.00025881	570.7438354491235	26.63	0.35469	26.63	26.474	26.828	0					11	6	2	0	0	0	0.38603	1	8011	8011		25.399	3.6527	1	2628400	+		8534	26681	6113	6163	8301	8301					-0.09106127771929096
EEEETARYN	9	Unmodified	_EEEETARYN_					0	0	0			REV__GIMAP8|p.G405E|1|0.43|ENSG00000171115|chr7:150474543-150474543|G/A|missense_variant	REV__GIMAP8|p.G405E|1|0.43|ENSG00000171115|chr7:150474543-150474543|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	570.743825	1139.4731	-0.61303	-0.00034988	0.15958	9.1078E-05	-0.45345	-0.00025881	570.7438354491235	26.63	0.35469	26.63	26.474	26.828	0	-0.048917	0.00017193	NaN	25.399	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2628400	+		8535	26681	6113	6163							-0.09106127771929096
EEEEVLPIW	9	Unmodified	_EEEEVLPIW_					0	0	0		ENST00000588460.5_1_17:74733662-74733794:+|nuORF	ENST00000588460.5_1_17:74733662-74733794:+|nuORF	ENST00000588460.5_1_17:74733662-74733794:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	571.7355346679688	2	572.282054	1142.54956	-0.087888	-5.0297E-05	0.16667	9.5383E-05	0.078783	4.5086E-05	572.2820562224588	78.53	0.50491	78.53	78.251	78.756	0					23	9	3	0	0	0	0.75466	1	28721	28721		12.532	0	1	7442000			8536	13762	6114	6164	8302	8302					-0.016017042046541974
EEEEWTCADF	10	Unmodified	_EEEEWTCADF_					0	0	0		ENST00000577662.1_1_17:63534239-63554825:-|nuORF;ENSG00000168646|ENST00000307078|AXIN2	ENST00000577662.1_1_17:63534239-63554825:-|nuORF	ENST00000577662.1_1_17:63534239-63554825:-|nuORF	MSMS	A375_MHC_IP_R1	1	629.673583984375	2	629.732068	1257.44958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.901	1	35.901	35.401	36.401	0								0	0	0	0.15435	1	11976	11976		6.7232	2.1943	1				8537	7329	6115	6165	8303	8303					-0.16884309600800407
EEEFEEFF	8	Unmodified	_EEEFEEFF_					0	0	0		tr|U7T5E1|U7T5E1_FUSNU16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00032PE=3SV=1	tr|U7T5E1|U7T5E1_FUSNU16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00032PE=3SV=1	tr|U7T5E1|U7T5E1_FUSNU16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00032PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	554.1895751953125	2	553.221662	1104.42877	-0.55275	-0.00030579	-0.35865	-0.00019841	-0.9114	-0.0005042	553.2214019488555	74.214	0.45583	74.214	73.995	74.451	0					14	8	3	0	0	0	0.72109	1	27001	27001		28.173	15.642	1	1057100			8538	30020	6116	6166	8304	8304					-0.11926531918129513
EEEFEMLH	8	Unmodified	_EEEFEMLH_					0	0	0		ENSG00000173575|ENST00000394196|CHD2;nc|ENSG00000173575|O14647-2|CHD2	ENSG00000173575|ENST00000394196|CHD2	ENSG00000173575|ENST00000394196|CHD2	MULTI-SECPEP	A375_MHC_IP_R2	2	1063.3367919921875	1	1063.44009	1062.43281	0.06837	7.2707E-05	-0.91579	-0.00097388	-0.84742	-0.00090118	1064.4400546234335	121.03	1.6677	121.47	120.82	122.48	0.44488					40	32	2	0	0	0	0.97144	1	46096	46096		14.582	4.3983	1	96681000			8539	7811	6117	6167	8305	8305					-0.09590765696066228
EEEFEMLH	8	Unmodified	_EEEFEMLH_					0	0	0		ENSG00000173575|ENST00000394196|CHD2;nc|ENSG00000173575|O14647-2|CHD2	ENSG00000173575|ENST00000394196|CHD2	ENSG00000173575|ENST00000394196|CHD2	MULTI-SECPEP	A375_MHC_IP_R2	2	1063.342041015625	1	1063.44009	1062.43281	0.064043	6.8106E-05	-0.67133	-0.00071391	-0.60728	-0.00064581	1064.4404655658732	122.52	1.4179	122.89	122.42	123.83	0.37661					42	27	2	0	0	0	0.93416	1	47283	47283		20.871	6.0329	1	308080000			8540	7811	6117	6167	8306	8306					-0.09590765696066228
EEEFEMLH	8	Unmodified	_EEEFEMLH_					0	0	0		ENSG00000173575|ENST00000394196|CHD2;nc|ENSG00000173575|O14647-2|CHD2	ENSG00000173575|ENST00000394196|CHD2	ENSG00000173575|ENST00000394196|CHD2	MULTI-MATCH	A375_MHC_IP_R1	1		1	1063.44009	1062.43281	-0.42554	-0.00045254	-0.091051	-9.6828E-05	-0.51659	-0.00054937	1063.440920682493	122.71	1.4616	122.71	122.28	123.74	0	-0.093673	0.00038598	NaN	20.871	45	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270380000			8541	7811	6117	6167							-0.09590765696066228
EEEFKLWNRLY	11	Unmodified	_EEEFKLWNRLY_					0	0	0		nc|ENSG00000187790|Q8IYD8-3|FANCM;ENSG00000187790|ENST00000267430|FANCM	nc|ENSG00000187790|Q8IYD8-3|FANCM	nc|ENSG00000187790|Q8IYD8-3|FANCM	MSMS	A375_MHC_IP_R2	2	763.949462890625	2	763.885541	1525.75653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.355	1	60.102	59.602	60.602	0.74714								0	0	0	0.16179	1	22463	22463		9.3831	0	1				8542	8857	6118	6168	8307	8307					0.014680833435249951
EEEGAGFSYDE	11	Unmodified	_EEEGAGFSYDE_					0	0	0			REV__ENST00000461416.1_1_7:128582135-128587139:+|nuORF	REV__ENST00000461416.1_1_7:128582135-128587139:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	617.1325073242188	2	616.733123	1231.45169	-0.64125	-0.00039548	-1.2005	-0.00074037	-1.8417	-0.0011359	616.7322019115929	102.35	0.66108	103.11	102.77	103.43	0.76428					30	12	3	0	0	0	0.99227	1	38762	38762		9.3831	4.0862	1	2906700	+		8543	18459	6119	6169	8308	8308					-0.15477557591316327
EEEGCMEY	8	Unmodified	_EEEGCMEY_					0	0	0		nc|ENSG00000171680|O94827-4|PLEKHG5;ENSG00000171680|ENST00000377728|PLEKHG5;nc|ENSG00000171680|O94827-3|PLEKHG5;nc|ENSG00000171680|O94827-7|PLEKHG5	nc|ENSG00000171680|O94827-4|PLEKHG5	nc|ENSG00000171680|O94827-4|PLEKHG5	MSMS	A375_MHC_IP_R2	2	495.13385009765625	2	495.164976	988.315398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.974	1	86.707	86.207	87.207	0.733								0	0	0	0.16876	1	32695	32695		2.8892	0	1				8544	7627	6120	6170	8309	8309					-0.17922666627180206
EEEGLGRM	8	Unmodified	_EEEGLGRM_					0	0	0			REV__ENSG00000277535|ENST00000620151|CT47C1	REV__ENSG00000277535|ENST00000620151|CT47C1	MSMS	A375_MHC_IP_R2	2	460.68951416015625	2	460.710742	919.406931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.29	1	43.062	42.562	43.562	0.7724								0	0	0	0.16876	1	15728	15728		5.2307	0.47466	1		+		8545	22973	6121	6171	8310	8310					-0.055996151476847444
EEEGPALIRRL	11	Unmodified	_EEEGPALIRRL_					0	0	0			REV__nc|ENSG00000186063|Q96BJ3-3|AIDA	REV__nc|ENSG00000186063|Q96BJ3-3|AIDA	MULTI-MSMS	A375_MHC_IP_R1	1	428.6416015625	3	428.241976	1281.7041	-0.1293	-5.5371E-05	-0.31096	-0.00013317	-0.44026	-0.00018854	428.2418368505723	50.705	0.55801	50.705	50.408	50.966	0					29	10	4	0	0	0	0.59166	1	17969	17969		23.964	4.3382	1	7385200	+		8546	21942	6122	6172	8311	8311					0.07451545000549231
EEEGPALIRRL	11	Unmodified	_EEEGPALIRRL_					0	0	0			REV__nc|ENSG00000186063|Q96BJ3-3|AIDA	REV__nc|ENSG00000186063|Q96BJ3-3|AIDA	MULTI-SECPEP	A375_MHC_IP_R1	1	428.60357666015625	3	428.241976	1281.7041	-0.1293	-5.5371E-05	-0.31096	-0.00013317	-0.44026	-0.00018854	428.2418368505723	50.705	0.55801	50.705	50.408	50.966	0					29	10	4	0	0	0	0.99778	1	18029	18029		6.2344	0.83165	1	7385200	+		8547	21942	6122	6172	8312	8312					0.07451545000549231
EEEGPALIRRL	11	Unmodified	_EEEGPALIRRL_					0	0	0			REV__nc|ENSG00000186063|Q96BJ3-3|AIDA	REV__nc|ENSG00000186063|Q96BJ3-3|AIDA	MULTI-MSMS	A375_MHC_IP_R2	2	428.6414489746094	3	428.241976	1281.7041	-0.46398	-0.0001987	-0.20951	-8.972E-05	-0.67349	-0.00028842	428.24189083759757	49.798	0.56013	50.552	50.244	50.804	0.75406					30	10	4	0	0	0	0.59166	1	18688	18688		23.964	4.3382	1	6955600	+		8548	21942	6122	6172	8313	8313					0.07451545000549231
EEEGPALIRRL	11	Unmodified	_EEEGPALIRRL_					0	0	0			REV__nc|ENSG00000186063|Q96BJ3-3|AIDA	REV__nc|ENSG00000186063|Q96BJ3-3|AIDA	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	428.241976	1281.7041	-0.46398	-0.0001987	-0.20951	-8.972E-05	-0.67349	-0.00028842	428.24189083759757	49.798	0.56013	50.552	50.244	50.804	0.75406	-0.076622	6.3645E-05	NaN	23.964	30	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6955600	+		8549	21942	6122	6172							0.07451545000549231
EEEGPDGPPRQ	11	Unmodified	_EEEGPDGPPRQ_					0	0	0			REV__nc|nan|Q8NAV2-2|C8orf58	REV__nc|nan|Q8NAV2-2|C8orf58	MSMS	A375_MHC_IP_R1	1	605.6856689453125	2	605.770374	1209.52619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.043	1	63.043	62.543	63.543	0								0	0	0	0.14837	1	22780	22780		21.537	4.5947	1		+		8550	22793	6123	6173	8314	8314					-0.07018749989288153
EEEGPEQC	8	Unmodified	_EEEGPEQC_					0	0	0			REV__ENST00000566016.5_1_16:46637844-46655271:-|nuORF	REV__ENST00000566016.5_1_16:46637844-46655271:-|nuORF	MSMS	A375_MHC_IP_R1	1	460.63525390625	2	460.66874	919.322927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.767	1	40.767	40.267	41.267	0								0	0	0	0.16876	1	14032	14032		2.5775	0	1		+		8551	21054	6124	6174	8315	8315					-0.13996191035266747
EEEGREAASW	10	Unmodified	_EEEGREAASW_					0	0	0		nc|ENSG00000140691|Q96C12-2|ARMC5;ENSG00000140691|ENST00000268314|ARMC5;nc|ENSG00000140691|Q96C12-3|ARMC5;nc|ENSG00000140691|Q96C12-4|ARMC5	nc|ENSG00000140691|Q96C12-2|ARMC5	nc|ENSG00000140691|Q96C12-2|ARMC5	MSMS	A375_MHC_IP_R1	1	582.212158203125	2	582.251817	1162.48908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.634	1	88.634	88.134	89.134	0								0	0	0	0.15308	1	32544	32544		10.824	1.4408	1				8552	5178	6125	6175	8316	8316					-0.08566421535056179
EEEHEEEDY	9	Unmodified	_EEEHEEEDY_					0	0	0			REV__ENSG00000121851|ENST00000369314|POLR3GL	REV__ENSG00000121851|ENST00000369314|POLR3GL	MSMS	A375_MHC_IP_R1	1	604.7072143554688	2	604.71493	1207.41531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.965	1	70.965	70.465	71.465	0								0	0	0	0.15486	1	25775	25775		4.756	0	1		+		8553	18173	6126	6176	8317	8317					-0.180104344880192
EEEHGVYVY	9	Unmodified	_EEEHGVYVY_					0	0	0		ENST00000551359.5_1_12:56713025-56726878:-|nuORF;ENSG00000135473|ENST00000440411|PAN2;nc|ENSG00000135473|Q504Q3-3|PAN2;nc|ENSG00000135473|Q504Q3|PAN2;ENST00000547226.5_1_12:56711395-56716647:-|nuORF	ENST00000551359.5_1_12:56713025-56726878:-|nuORF	ENST00000551359.5_1_12:56713025-56726878:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	562.716064453125	2	562.748379	1123.4822	-0.79842	-0.00044931	0.43313	0.00024374	-0.36528	-0.00020556	562.7483200044364	40.981	0.60963	41.755	41.438	42.047	0.77451					16	11	2	0	0	0	0.1978	1	15249	15249		38.151	1.645	1	1891100			8554	4689	6127	6177	8318	8318					-0.07459734415601815
EEEHKQFQL	9	Unmodified	_EEEHKQFQL_					0	0	0			REV__nc|ENSG00000155508|Q9UFF9-2|CNOT8	REV__nc|ENSG00000155508|Q9UFF9-2|CNOT8	MULTI-MSMS	A375_MHC_IP_R2	2	594.6881713867188	2	594.288202	1186.56185	-0.90928	-0.00054038	0.14734	8.756E-05	-0.76195	-0.00045282	594.2882600493465	23.039	0.71338	23.669	23.215	23.928	0.63014					17	13	3	0	0	0	0.64945	1	7383	7383		16.149	16.149	1	2901000	+		8555	19925	6128	6178	8319	8319					-0.023966677416183302
EEEHTKKM	8	Unmodified	_EEEHTKKM_					0	0	0			REV__ENST00000515347.2_1_5:79584647-79585058:+|nuORF	REV__ENST00000515347.2_1_5:79584647-79585058:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1033.5465087890625	1	1031.48262	1030.47534	0.10033	0.00010349	-1.2478	-0.0012871	-1.1475	-0.0011836	1031.4848695007256	109.01	0.81541	109.76	109.16	109.98	0.74684					32	15	3	0	0	0	0.77123	1	40989	40989		14.582	1.0738	1	5065800	+		8556	25661	6129	6179	8320	8320					-0.038673705678547776
EEEIGTPRKF	10	Unmodified	_EEEIGTPRKF_					0	0	0		ENSG00000080839|ENST00000373664|RBL1;nc|ENSG00000080839|P28749-2|RBL1	ENSG00000080839|ENST00000373664|RBL1	ENSG00000080839|ENST00000373664|RBL1	MULTI-MSMS	A375_MHC_IP_R1	1	402.9433898925781	3	402.543544	1204.6088	-0.8093	-0.00032578	0.52622	0.00021183	-0.28308	-0.00011395	402.5437247895078	29.543	0.50153	29.543	29.201	29.703	0					14	9	2	0	0	0	0.080535	1	9257	9257		51.765	17.543	1	11690000			8557	1723	6130	6180	8321	8321					0.01468191809522068
EEEIGTPRKF	10	Unmodified	_EEEIGTPRKF_					0	0	0		ENSG00000080839|ENST00000373664|RBL1;nc|ENSG00000080839|P28749-2|RBL1	ENSG00000080839|ENST00000373664|RBL1	ENSG00000080839|ENST00000373664|RBL1	MULTI-MSMS	A375_MHC_IP_R2	2	402.9435729980469	3	402.543544	1204.6088	-0.70653	-0.00028441	0.57945	0.00023325	-0.12708	-5.1156E-05	402.5437627554909	28.823	0.49676	29.522	29.333	29.83	0.69872					14	9	3	0	0	0	0.033253	1	10021	10021		62.78	25.009	1	14253000			8558	1723	6130	6180	8322	8322					0.01468191809522068
EEEIHFND	8	Unmodified	_EEEIHFND_					0	0	0		nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A;ENST00000568515.1_1_15:66007788-66048788:-|nuORF	nc|ENSG00000174485|Q7Z401|DENND4A	nc|ENSG00000174485|Q7Z401|DENND4A	MSMS	A375_MHC_IP_R1	1	516.6843872070312	2	516.717079	1031.4196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.974	1	73.974	73.474	74.474	0								0	0	0	0.16876	1	26944	26944		14.582	0	1				8559	7887	6131	6181	8323	8323					-0.09484880483796587
EEEIITLQQF	10	Unmodified	_EEEIITLQQF_					0	0	0		ENSG00000173068|ENST00000380672|BNC2;nc|ENSG00000173068|Q6ZN30-2|BNC2	ENSG00000173068|ENST00000380672|BNC2	ENSG00000173068|ENST00000380672|BNC2	MSMS	A375_MHC_IP_R2	2	625.446044921875	2	625.319168	1248.62378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.18	1	116.84	116.34	117.34	0.65962								0	0	0	0.14673	1	43844	43844		24.021	6.9077	1				8560	7764	6132	6182	8324	8324					0.009416388868658032
EEEIKYFNCN	10	Unmodified	_EEEIKYFNCN_					0	0	0		ENSG00000110318|ENST00000263468|CEP126	ENSG00000110318|ENST00000263468|CEP126	ENSG00000110318|ENST00000263468|CEP126	MULTI-SECPEP	A375_MHC_IP_R2	2	430.92279052734375	3	430.188661	1287.54415	-0.74282	-0.00031955	0.469	0.00020176	-0.27382	-0.0001178	430.1887108442649	29.716	0.45312	30.414	30.185	30.638	0.69872					19	8	3	0	0	0	0.93799	1	10391	10391		1.7423	1.7423	1	8133500			8561	2928	6133	6183	8325	8325					-0.0881175105876082
EEEILRLHQQ	10	Unmodified	_EEEILRLHQQ_					0	0	0		ENSG00000110274|ENST00000278935|CEP164;nc|ENSG00000110274|Q9UPV0-2|CEP164;ENST00000533223.1_1_11:117257895-117280842:+|nuORF	ENSG00000110274|ENST00000278935|CEP164	ENSG00000110274|ENST00000278935|CEP164	MSMS	A375_MHC_IP_R2	2	647.769775390625	2	647.841133	1293.66771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.86	1	113.58	113.08	114.08	0.72458								0	0	0	0.15332	1	42544	42544		10.074	3.3508	1				8562	2926	6134	6184	8326	8326					0.032626681038664174
EEEIRVIKRI	10	Unmodified	_EEEIRVIKRI_					0	0	0			REV__tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1	REV__tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1	MSMS	A375_MHC_IP_R1	1	642.7952880859375	2	642.885344	1283.75613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.23	1	142.23	141.73	142.73	0								0	0	0	0.15591	1	54576	54576		1.6526	0	1		+		8563	28528	6135	6185	8327	8327					0.12560708414343935
EEEITSILFS	10	Unmodified	_EEEITSILFS_					0	0	0		ENST00000533912.1_1_6:131191025-131199321:-|nuORF	ENST00000533912.1_1_6:131191025-131199321:-|nuORF	ENST00000533912.1_1_6:131191025-131199321:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1168.487548828125	1	1167.57796	1166.57069	0.22275	0.00026008	2.2454	0.0026216	2.4681	0.0028817	1167.581832905051	119.38	0.20227	119.91	119.79	119.99	0.5321					5	3	2	0	0	0	0.62155	1	45455	45455		19.257	1.122	1	12010000			8564	13207	6136	6186	8328	8328					-0.005937388958045631
EEEITVGSW	9	Unmodified	_EEEITVGSW_					0	0	0		ENSG00000198932|ENST00000537097|GPRASP1	ENSG00000198932|ENST00000537097|GPRASP1	ENSG00000198932|ENST00000537097|GPRASP1	MULTI-MSMS	A375_MHC_IP_R1	1	525.169189453125	2	525.242929	1048.47131	0.028945	1.5203E-05	0.27467	0.00014427	0.30362	0.00015947	525.2429678911258	69.576	0.20309	69.576	69.478	69.681	0					5	3	2	0	0	0	0.5339	1	25250	25250		18.135	3.5533	1	482410			8565	9376	6137	6187	8329	8329					-0.05099136789885961
EEEKEQDEDEY	11	Unmodified	_EEEKEQDEDEY_					0	0	0		ENSG00000152133|ENST00000674370|GPATCH11;nc|ENSG00000152133|Q8N954|GPATCH11;ENST00000473067.1_1_2:37315561-37321362:+|nuORF;nc|ENSG00000152133|Q8N954-2|GPATCH11	ENSG00000152133|ENST00000674370|GPATCH11	ENSG00000152133|ENST00000674370|GPATCH11	MULTI-MSMS	A375_MHC_IP_R1	1	722.175537109375	2	721.775716	1441.53688	-0.36378	-0.00026257	-0.48826	-0.00035242	-0.85205	-0.00061499	721.7753004650159	35.804	0.61246	35.804	35.421	36.033	0					20	11	2	0	0	0	0.47886	1	11924	11924		32.786	11.249	1	4186900			8566	5948	6138	6188	8330	8330					-0.16622856916137607
EEEKEQDEDEY	11	Unmodified	_EEEKEQDEDEY_					0	0	0		ENSG00000152133|ENST00000674370|GPATCH11;nc|ENSG00000152133|Q8N954|GPATCH11;ENST00000473067.1_1_2:37315561-37321362:+|nuORF;nc|ENSG00000152133|Q8N954-2|GPATCH11	ENSG00000152133|ENST00000674370|GPATCH11	ENSG00000152133|ENST00000674370|GPATCH11	MULTI-MSMS	A375_MHC_IP_R2	2	722.1748046875	2	721.775716	1441.53688	-1.0084	-0.0007278	0.39293	0.0002836	-0.61543	-0.0004442	721.7759854525852	35.261	0.6059	36.025	35.627	36.233	0.76338					20	11	2	0	0	0	0.47886	1	12741	12741		32.786	27.054	1	3200500			8567	5948	6138	6188	8331	8331					-0.16622856916137607
EEEKEQDEDEY	11	Unmodified	_EEEKEQDEDEY_					0	0	0		ENSG00000152133|ENST00000674370|GPATCH11;nc|ENSG00000152133|Q8N954|GPATCH11;ENST00000473067.1_1_2:37315561-37321362:+|nuORF;nc|ENSG00000152133|Q8N954-2|GPATCH11	ENSG00000152133|ENST00000674370|GPATCH11	ENSG00000152133|ENST00000674370|GPATCH11	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	721.775716	1441.53688	-0.36378	-0.00026257	-0.48826	-0.00035242	-0.85205	-0.00061499	721.7753004650159	35.804	0.61246	35.804	35.421	36.033	0	-0.11052	-0.00063242	NaN	32.786	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4186900			8568	5948	6138	6188							-0.16622856916137607
EEEKFPAAI	9	Unmodified	_EEEKFPAAI_					0	0	0			REV__nc|ENSG00000155090|Q13118-2|KLF10	REV__nc|ENSG00000155090|Q13118-2|KLF10	MULTI-MSMS	A375_MHC_IP_R1	1	1035.4361572265625	1	1033.52005	1032.51278	0.28838	0.00029805	0.2331	0.00024091	0.52148	0.00053896	1033.5192752725752	105.57	1.5294	105.57	105.25	106.78	0					59	29	3	0	0	0	0.58047	1	38899	38899		15.847	15.847	1	18827000	+		8569	19914	6139	6189	8332	8332					-0.00217956030564892
EEEKGQNISW	10	Unmodified	_EEEKGQNISW_					0	0	0		ENSG00000169981|ENST00000396056|ZNF35	ENSG00000169981|ENST00000396056|ZNF35	ENSG00000169981|ENST00000396056|ZNF35	MULTI-MSMS	A375_MHC_IP_R1	1	610.7435913085938	2	610.283117	1218.55168	-0.25632	-0.00015643	0.20702	0.00012634	-0.049298	-3.0086E-05	610.2833059388938	40.47	0.66209	40.47	40.1	40.762	0					17	12	2	0	0	0	0.15934	2	13869	13869;13926		53.404	28.413	1	2541200			8570	7460	6140	6190	8333;8334	8333					-0.048852754668587295
EEEKGQNISW	10	Unmodified	_EEEKGQNISW_					0	0	0		ENSG00000169981|ENST00000396056|ZNF35	ENSG00000169981|ENST00000396056|ZNF35	ENSG00000169981|ENST00000396056|ZNF35	MULTI-MSMS	A375_MHC_IP_R2	2	610.6828002929688	2	610.283117	1218.55168	-0.51472	-0.00031412	0.046721	2.8513E-05	-0.468	-0.00028561	610.2832133142422	39.656	0.45691	40.43	40.219	40.676	0.77451					14	8	2	0	0	0	0.32528	1	14652	14652		38.615	15.878	1	2439500			8571	7460	6140	6190	8335	8335					-0.048852754668587295
EEEKHRVH	8	Unmodified	_EEEKHRVH_					0	0	0		ENSG00000168757|ENST00000320701|TSPY2	ENSG00000168757|ENST00000320701|TSPY2	ENSG00000168757|ENST00000320701|TSPY2	MULTI-SECPEP	A375_MHC_IP_R2	2	1063.3367919921875	1	1063.52793	1062.52066	0.070173	7.4631E-05	0.15993	0.00017009	0.23011	0.00024472	1065.5319401280703	121.4	1.4674	121.85	120.92	122.38	0.44488					58	28	3	0	0	0	0.972	1	46096	46096		14.582	14.582	1	190600000			8572	7338	6141	6191	8336	8336					-0.008103839904379129
EEEKIVKKL	9	Unmodified	_EEEKIVKKL_					0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-MSMS	A375_MHC_IP_R1	1	372.96038818359375	3	372.560535	1114.65977	0.3436	0.00012801	-0.22304	-8.3096E-05	0.12056	4.4914E-05	372.56042634439274	20.048	0.71026	20.048	19.674	20.384	0					32	13	3	0	0	0	0.62591	1	5071	5071		13.615	3.4643	1	7964900			8573	3668	6142	6192	8337	8337					0.10703140854366211
EEEKKECHQK	10	Unmodified	_EEEKKECHQK_					0	0	0		nc|ENSG00000167110|Q08379|GOLGA2;ENSG00000167110|ENST00000611957|GOLGA2;ENST00000266746.10_1_12:100561203-100566904:-|nuORF	nc|ENSG00000167110|Q08379|GOLGA2	nc|ENSG00000167110|Q08379|GOLGA2	MSMS	A375_MHC_IP_R2	2	644.3782958984375	2	644.303526	1286.5925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.989	1	72.724	72.224	73.224	0.73421								0	0	0	0.15332	1	27317	27317		10.074	1.3285	1				8574	7156	6143	6193	8338	8338					-0.0393325741888475
EEEKKELERKL	11	Unmodified	_EEEKKELERKL_					0	0	0		nc|ENSG00000130779|P30622-2|CLIP1;nc|ENSG00000130779|P30622-1|CLIP1;ENSG00000130779|ENST00000620786|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	MSMS	A375_MHC_IP_R1	1	715.6296997070312	2	715.896106	1429.77766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.67	1	113.67	113.17	114.17	0								0	0	0	0.16179	1	41667	41667		9.3831	0	1				8575	4282	6144	6194	8339	8339					0.07996048652353238
EEEKLQAAF	9	Unmodified	_EEEKLQAAF_					0	0	0		ENSG00000145781|ENST00000274458|COMMD10	ENSG00000145781|ENST00000274458|COMMD10	ENSG00000145781|ENST00000274458|COMMD10	MSMS	A375_MHC_IP_R1	1	532.6923828125	2	532.766571	1063.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.023	1	93.023	92.523	93.523	0								0	0	0	0.15486	1	34191	34191		13.508	1.8676	1				8576	5582	6145	6195	8340	8340					-0.010628575189230105
EEEKNFKAF	9	Unmodified	_EEEKNFKAF_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	A375_MHC_IP_R1	1	571.6793212890625	2	571.279846	1140.54514	-0.61203	-0.00034964	0.22975	0.00013125	-0.38227	-0.00021839	571.2798868509063	30.282	0.80774	30.282	30.049	30.857	0					41	15	4	0	0	0	0.0042663	1	9579	9579		160.69	116.83	1	74122000			8577	7191	6146	6196	8341	8341					-0.019511686275791362
EEEKNFKAF	9	Unmodified	_EEEKNFKAF_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-SECPEP	A375_MHC_IP_R1	1	381.63134765625	3	381.188989	1140.54514	0.0073147	2.7883E-06	0.43453	0.00016564	0.44184	0.00016843	381.18905594830983	30.326	1.2126	30.326	30.049	31.262	0					79	23	6	0	0	0	0.37663	1	9611	9611		43.772	28.524	1	163440000			8578	7191	6146	6196	8342	8342					-0.019511686275791362
EEEKNFKAF	9	Unmodified	_EEEKNFKAF_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-SECPEP	A375_MHC_IP_R2	2	571.6793212890625	2	571.279846	1140.54514	-0.89416	-0.00051081	0.33797	0.00019307	-0.55619	-0.00031774	571.2799638710763	29.562	0.91074	30.261	30.032	30.942	0.69872					48	17	4	0	0	0	0.02531	1	10311	10311		136.39	108.76	1	58780000			8579	7191	6146	6196	8343	8343					-0.019511686275791362
EEEKNFKAF	9	Unmodified	_EEEKNFKAF_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MATCH	A375_MHC_IP_R2	2		3	381.188989	1140.54514	-0.63159	-0.00024076	0.7123	0.00027152	0.080702	3.0763E-05	381.189239141591	29.562	1.4172	30.26	29.93	31.347	0.69872	-0.032945	9.9404E-05	NaN	43.772	69	27	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163350000			8580	7191	6146	6196							-0.019511686275791362
EEEKNKSRWY	10	Unmodified	_EEEKNKSRWY_					0	0	0			REV__nc|ENSG00000144847|Q5DX21-3|IGSF11	REV__nc|ENSG00000144847|Q5DX21-3|IGSF11	MULTI-SECPEP	A375_MHC_IP_R1	1	457.28955078125	3	456.889603	1367.64698	-0.066485	-3.0376E-05	-0.25697	-0.00011741	-0.32345	-0.00014778	456.889428161712	71.44	0.70693	71.44	71.159	71.866	0					28	13	3	0	0	0	0.93873	1	25937	25937		5.0475	2.7948	1	8229800	+		8581	19450	6147	6197	8344	8344					-0.022139222757914467
EEEKRVYPEPR	11	Unmodified	_EEEKRVYPEPR_					0	0	0		ENST00000491775.5_1_13:111806017-111861644:+|nuORF	ENST00000491775.5_1_13:111806017-111861644:+|nuORF	ENST00000491775.5_1_13:111806017-111861644:+|nuORF	MSMS	A375_MHC_IP_R1	1	716.29736328125	2	716.364973	1430.71539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.08	1	112.08	111.58	112.58	0								0	0	0	0.16164	1	41084	41084		10.151	4.8537	1				8582	12666	6148	6198	8345	8345					0.017263223040117737
EEEKSYLW	8	Unmodified	_EEEKSYLW_					0	0	0		ENSG00000112343|ENST00000357085|TRIM38	ENSG00000112343|ENST00000357085|TRIM38	ENSG00000112343|ENST00000357085|TRIM38	MULTI-MSMS	A375_MHC_IP_R2	2	542.6525268554688	2	542.253297	1082.49204	-1.149	-0.00062305	0.1027	5.5687E-05	-1.0463	-0.00056736	542.2532967133411	61.401	0.45313	62.146	61.97	62.423	0.74503					14	8	2	0	0	0	0.70783	2	23296	23262;23296		32.305	2.1497	1	1903800			8583	3079	6149	6199	8346;8347	8347					-0.04590546410236129
EEEKSYLW	8	Unmodified	_EEEKSYLW_					0	0	0		ENSG00000112343|ENST00000357085|TRIM38	ENSG00000112343|ENST00000357085|TRIM38	ENSG00000112343|ENST00000357085|TRIM38	MULTI-MATCH	A375_MHC_IP_R1	1		2	542.253297	1082.49204	-0.51868	-0.00028125	-0.23433	-0.00012707	-0.75301	-0.00040832	542.7545286886319	62.218	0.40891	62.218	61.994	62.403	0	0.035526	-0.00011445	NaN	32.305	20	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2967100			8584	3079	6149	6199							-0.04590546410236129
EEEKTVIYK	9	Unmodified	_EEEKTVIYK_					0	0	0		ENSG00000219626|ENST00000615575|FAM228B	ENSG00000219626|ENST00000615575|FAM228B	ENSG00000219626|ENST00000615575|FAM228B	MULTI-MSMS	A375_MHC_IP_R2	2	380.6044921875	3	380.204528	1137.59175	-0.42621	-0.00016205	0.01293	4.9161E-06	-0.41328	-0.00015713	380.20446218101426	25.493	0.76391	26.137	25.822	26.585	0.64368					32	14	3	0	0	0	0.62591	1	8515	8515		13.615	5.1706	1	14213000			8585	9662	6150	6200	8348	8348					0.028462712037253368
EEEKYTIR	8	Unmodified	_EEEKYTIR_					0	0	0			REV__nc|ENSG00000143450|Q9UMX2-2|OAZ3	REV__nc|ENSG00000143450|Q9UMX2-2|OAZ3	MULTI-MSMS	A375_MHC_IP_R1	1	1068.5985107421875	1	1067.53677	1066.52949	0.61591	0.0006575	-2.8917	-0.003087	-2.2758	-0.0024295	1067.5385238958143	114.43	0.35432	114.43	114.21	114.57	0					11	6	3	0	0	0	0.77123	1	42005	42005		14.582	0	1	4729200	+		8586	27269	6151	6201	8349	8349					-0.0011145514463350992
EEEKYTIR	8	Unmodified	_EEEKYTIR_					0	0	0			REV__nc|ENSG00000143450|Q9UMX2-2|OAZ3	REV__nc|ENSG00000143450|Q9UMX2-2|OAZ3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	1067.53677	1066.52949	0.61591	0.0006575	-2.8917	-0.003087	-2.2758	-0.0024295	1067.5385238958143	114.43	0.35432	114.43	114.21	114.57	0	0	0	NaN	14.582	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4729200	+		8587	27269	6151	6201							-0.0011145514463350992
EEELGRDW	8	Unmodified	_EEELGRDW_					0	0	0		ENSG00000123815|ENST00000324464|COQ8B;nc|ENSG00000123815|Q96D53-2|COQ8B	ENSG00000123815|ENST00000324464|COQ8B	ENSG00000123815|ENST00000324464|COQ8B	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1766357421875	2	517.232896	1032.45124	-0.6179	-0.0003196	-0.33098	-0.0001712	-0.94889	-0.0004908	517.2326635748319	47.72	0.35587	48.482	48.326	48.682	0.76128					10	6	2	0	0	0	0.94587	1	17955	17955		20.454	8.8133	1	1254200			8588	3859	6152	6202	8350	8350					-0.06368887729854578
EEELIEKWD	9	Unmodified	_EEELIEKWD_					0	0	0			REV__tr|U7STX1|U7STX1_FUSNUUracil-DNAglycosylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ungPE=3SV=1	REV__tr|U7STX1|U7STX1_FUSNUUracil-DNAglycosylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ungPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	397.2806091308594	3	397.524038	1189.55028	-0.41322	-0.00016426	1.1443	0.00045487	0.73104	0.0002906	397.5245219760361	23.661	0.55906	23.661	23.483	24.042	0					17	10	2	0	0	0	0.74169	1	6722	6722		7.609	0	1	7112700	+		8589	28514	6153	6203	8351	8351					-0.036909095555984095
EEELKKMLA	9	Unmodified	_EEELKKMLA_					0	0	0			REV__nc|ENSG00000173320|Q9P2F5-2|STOX2	REV__nc|ENSG00000173320|Q9P2F5-2|STOX2	MULTI-SECPEP	A375_MHC_IP_R1	1	364.59844970703125	3	364.198609	1089.574	0.17239	6.2786E-05	-0.13485	-4.9112E-05	0.037543	1.3673E-05	364.1985075886577	34.179	0.35237	34.179	34.001	34.353	0					14	6	3	0	0	0	0.60917	1	11244	11244		18.373	12.139	1	7937800	+		8590	21215	6154	6204	8352	8352					0.0327923267720962
EEELRRFEEE	10	Unmodified	_EEELRRFEEE_					0	0	0		ENST00000485798.5_1_19:49403599-49425678:+|nuORF;ENST00000492367.1_1_19:49422384-49425678:+|nuORF;ENSG00000104805|ENST00000405315|NUCB1	ENST00000485798.5_1_19:49403599-49425678:+|nuORF	ENST00000485798.5_1_19:49403599-49425678:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	456.2803649902344	3	455.880884	1364.62082	-0.54702	-0.00024938	-0.41689	-0.00019005	-0.96391	-0.00043943	455.88070636973157	23.223	0.45742	23.853	23.572	24.029	0.63014					12	8	2	0	0	0	0.70496	1	7442	7442		5.7834	0	1	17218000			8591	2537	6155	6205	8353	8353					-0.04690236237911449
EEELRRQW	8	Unmodified	_EEELRRQW_					0	0	0			REV__nc|ENSG00000150275|Q96QU1-4|PCDH15	REV__nc|ENSG00000150275|Q96QU1-4|PCDH15	MULTI-SECPEP	A375_MHC_IP_R1	1	573.68798828125	2	573.288537	1144.56252	-0.077436	-4.4393E-05	-0.91874	-0.0005267	-0.99618	-0.0005711	573.2881007708297	45.75	0.71067	45.75	45.484	46.195	0					20	13	2	0	0	0	0.69122	1	16040	16040		39.957	20.7	1	1713900	+		8592	27284	6156	6206	8354	8354					-0.003978283019023365
EEELTELEQIN	11	Unmodified	_EEELTELEQIN_					0	0	0			REV__tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1	REV__tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	450.2773132324219	3	449.548912	1345.62491	-0.41628	-0.00018714	3.6919	0.0016597	3.2756	0.0014726	449.8841108235544	23.476	0.35738	23.476	23.278	23.635	0					12	6	3	0	0	0	0.99331	1	6378	6378		4.4062	0	1	3362600	+		8593	28386	6157	6207	8355	8355					-0.03408191534890648
EEELYGAKELY	11	Unmodified	_EEELYGAKELY_					0	0	0			REV__nc|ENSG00000165837|Q5W0A0-2|ERICH6B	REV__nc|ENSG00000165837|Q5W0A0-2|ERICH6B	MULTI-SECPEP	A375_MHC_IP_R1	1	448.1575622558594	3	448.550364	1342.62926	0.41736	0.00018721	-2.747	-0.0012322	-2.3297	-0.001045	448.54859575376963	45.042	0.3051	45.042	44.878	45.183	0					10	5	3	0	0	0	0.99676	1	15718	15718		0	0	1	753630	+		8594	20630	6158	6208	8356	8356					-0.028346823213041716
EEEMESIRRE	10	Unmodified	_EEEMESIRRE_					0	0	0			REV__nc|ENSG00000058272|O14974-5|PPP1R12A	REV__nc|ENSG00000058272|O14974-5|PPP1R12A	MULTI-SECPEP	A375_MHC_IP_R2	2	654.69873046875	2	654.298441	1306.58233	-1.1292	-0.00073883	0.6726	0.00044008	-0.4566	-0.00029875	654.2989268261683	57.649	0.60851	58.398	58.17	58.779	0.74894					30	11	4	0	0	0	0.8528	1	21799	21799		21.537	5.3879	1	12385000	+		8595	16431	6159	6209	8357	8357					-0.058698651440863614
EEEMKTLGK	9	Unmodified	_EEEMKTLGK_					0	0	0		BTC|p.E159K|1|0.3|ENSG00000174808|chr4:74748103-74748103|C/T|missense_variant	BTC|p.E159K|1|0.3|ENSG00000174808|chr4:74748103-74748103|C/T|missense_variant	BTC|p.E159K|1|0.3|ENSG00000174808|chr4:74748103-74748103|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	1064.2298583984375	1	1064.52924	1063.52196	0.10093	0.00010744	0.6944	0.0007392	0.79533	0.00084665	1065.5321200994008	120.29	1.2168	120.82	119.99	121.2	0.5321					32	23	2	0	0	0	0.75466	1	45683	45683		12.532	8.2023	1	137260000			8596	257	6160	6210	8358	8358					-0.007259307365302448
EEEMKTLGK	9	Unmodified	_EEEMKTLGK_					0	0	0		BTC|p.E159K|1|0.3|ENSG00000174808|chr4:74748103-74748103|C/T|missense_variant	BTC|p.E159K|1|0.3|ENSG00000174808|chr4:74748103-74748103|C/T|missense_variant	BTC|p.E159K|1|0.3|ENSG00000174808|chr4:74748103-74748103|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		1	1064.52924	1063.52196	-0.14485	-0.0001542	2.2952	0.0024433	2.1504	0.0022891	1065.5338431727178	120.75	1.9754	120.75	119.59	121.57	0	-0.033643	0.00049104	NaN	12.532	59	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101900000			8597	257	6160	6210							-0.007259307365302448
EEEMLLFNI	9	Unmodified	_EEEMLLFNI_					0	0	0			REV__ENST00000484738.1_1_1:244819598-244819724:+|nuORF	REV__ENST00000484738.1_1_1:244819598-244819724:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	569.1749877929688	2	569.278457	1136.54236	-0.72085	-0.00041037	2.3666	0.0013472	1.6457	0.00093687	569.2778215134003	67.939	0.55535	67.939	67.654	68.209	0					18	10	3	0	0	0	0.41409	1	24675	24675		24.021	4.7636	1	758720	+		8598	25302	6161	6211	8359	8359					-0.020447600767283802
EEEMTAKV	8	Unmodified	_EEEMTAKV_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	A375_MHC_IP_R1	1	937.4345703125	1	936.434274	935.426998	0.13519	0.0001266	2.0387	0.0019091	2.1739	0.0020357	936.4360134483155	110.45	0.30472	110.45	110.29	110.59	0					7	5	2	0	0	0	0.75322	1	40484	40484		19.439	0	1	1840100			8599	5505	6162	6212	8360	8360					-0.04329864207727496
EEENDSDGSY	10	Unmodified	_EEENDSDGSY_					0	0	0			REV__ENSG00000003756|ENST00000347869|RBM5	REV__ENSG00000003756|ENST00000347869|RBM5	MSMS	A375_MHC_IP_R2	2	572.6636962890625	2	572.69928	1143.38401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.499	1	76.239	75.739	76.739	0.74052								0	0	0	0.1552	1	28660	28660		3.9444	0.66309	1		+		8600	16093	6163	6213	8361	8361					-0.1819500752210388
EEENEWKKYNI	11	Unmodified	_EEENEWKKYNI_					0	0	0			REV__nc|ENSG00000122986|Q96D96-2|HVCN1	REV__nc|ENSG00000122986|Q96D96-2|HVCN1	MULTI-MSMS	A375_MHC_IP_R2	2	494.17926025390625	3	494.568418	1480.68342	-0.75695	-0.00037437	0.60412	0.00029878	-0.15283	-7.5586E-05	494.56847317578814	38.109	0.5131	38.883	38.636	39.149	0.77451					16	9	3	0	0	0	0.72949	1	13982	13982		4.7159	0	1	2027600	+		8601	18227	6164	6214	8362	8362					-0.03769090169748779
EEENFFKRL	9	Unmodified	_EEENFFKRL_					0	0	0		ENST00000489023.5_1_2:210693994-210832362:+|nuORF;nc|ENSG00000144406|Q8N2C7-2|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80	ENST00000489023.5_1_2:210693994-210832362:+|nuORF	ENST00000489023.5_1_2:210693994-210832362:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1211.40283203125	1	1211.60551	1210.59824	0.37169	0.00045034	-2.5826	-0.0031291	-2.2109	-0.0026788	1211.6008440566738	116.23	0.25627	116.89	116.82	117.07	0.65962					6	4	2	0	0	0	0.73363	1	43854	43854		15.847	1.9411	1	7945400			8602	12628	6165	6215	8363	8363					0.0013620915508454345
EEENKLVKKI	10	Unmodified	_EEENKLVKKI_					0	0	0		ENSG00000122545|ENST00000350320|SEPTIN7;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENSG00000122545|ENST00000350320|SEPTIN7	ENSG00000122545|ENST00000350320|SEPTIN7	MULTI-MSMS	A375_MHC_IP_R1	1	410.9749450683594	3	410.574844	1228.7027	0.29714	0.000122	-0.34831	-0.00014301	-0.051171	-2.1009E-05	410.5746765855943	21.532	0.61046	21.532	21.25	21.86	0					33	11	4	0	0	0	0.0040472	1	5659	5659		87.123	51.128	1	22519000			8603	3789	6166	6216	8364	8364					0.09749910911796178
EEENKLVKKI	10	Unmodified	_EEENKLVKKI_					0	0	0		ENSG00000122545|ENST00000350320|SEPTIN7;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENSG00000122545|ENST00000350320|SEPTIN7	ENSG00000122545|ENST00000350320|SEPTIN7	MULTI-MSMS	A375_MHC_IP_R1	1	615.7584228515625	2	615.358628	1228.7027	-0.081245	-4.9995E-05	-0.69632	-0.00042849	-0.77757	-0.00047848	615.3582076335838	21.575	0.30423	21.575	21.352	21.656	0					12	5	3	0	0	0	0.042457	2	5705	5667;5705		78.06	46.023	1	2237400			8604	3789	6166	6216	8365;8366	8366					0.09749910911796178
EEENKLVKKI	10	Unmodified	_EEENKLVKKI_					0	0	0		ENSG00000122545|ENST00000350320|SEPTIN7;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENSG00000122545|ENST00000350320|SEPTIN7	ENSG00000122545|ENST00000350320|SEPTIN7	MULTI-MSMS	A375_MHC_IP_R2	2	410.9747314453125	3	410.574844	1228.7027	-0.29579	-0.00012144	-0.12639	-5.1894E-05	-0.42219	-0.00017334	410.57476489490745	19.92	0.55463	20.53	20.197	20.752	0.61029					36	10	4	0	0	0	0.014421	2	6102	6102;6186		85.764	57.531	1	15183000			8605	3789	6166	6216	8367;8368	8367					0.09749910911796178
EEENKLVKKI	10	Unmodified	_EEENKLVKKI_					0	0	0		ENSG00000122545|ENST00000350320|SEPTIN7;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENSG00000122545|ENST00000350320|SEPTIN7	ENSG00000122545|ENST00000350320|SEPTIN7	MULTI-SECPEP	A375_MHC_IP_R2	2	615.7578735351562	2	615.358628	1228.7027	-0.91668	-0.00056409	-0.47706	-0.00029357	-1.3937	-0.00085766	615.3584323443424	19.964	0.40313	20.575	20.298	20.701	0.61029					11	7	2	0	0	0	0.24808	1	6154	6154		63.961	30.516	1	1194200			8606	3789	6166	6216	8369	8369					0.09749910911796178
EEENLGKGEY	10	Unmodified	_EEENLGKGEY_					0	0	0		NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	584.6614990234375	2	584.26185	1166.50915	-0.53649	-0.00031345	-0.040895	-2.3893E-05	-0.57739	-0.00033735	584.2618387499732	26.758	0.45243	26.758	26.575	27.027	0					20	8	3	0	0	0	0.013856	1	8022	8022		124.95	55.848	1	13805000			8607	4441	6167	6217	8370	8370					-0.06744670595071511
EEENLGKGEY	10	Unmodified	_EEENLGKGEY_					0	0	0		NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	584.6614990234375	2	584.26185	1166.50915	-0.85758	-0.00050105	0.29197	0.00017059	-0.56561	-0.00033047	584.2620555264126	26.223	0.6095	26.882	26.703	27.313	0.65992					22	11	3	0	0	0	0.025827	1	8853	8853		91.085	39.455	1	13471000			8608	4441	6167	6217	8371	8371					-0.06744670595071511
EEENLHKLF	9	Unmodified	_EEENLHKLF_					0	0	0			REV__nc|ENSG00000170423|Q8N1N4-2|KRT78	REV__nc|ENSG00000170423|Q8N1N4-2|KRT78	MULTI-MSMS	A375_MHC_IP_R2	2	580.19287109375	2	579.793121	1157.57169	-0.91556	-0.00053084	1.3201	0.0007654	0.40457	0.00023457	579.7939763644495	37.102	0.40518	37.873	37.665	38.07	0.7709					17	7	3	0	0	0	0.4867	1	13601	13601		20.454	2.3073	1	2150800	+	+	8609	15894	6168	6218	8372	8372					-0.0007947973626869498
EEENLHKLF	9	Unmodified	_EEENLHKLF_					0	0	0			REV__nc|ENSG00000170423|Q8N1N4-2|KRT78	REV__nc|ENSG00000170423|Q8N1N4-2|KRT78	MULTI-MATCH	A375_MHC_IP_R1	1		2	579.793121	1157.57169	-0.34319	-0.00019898	0.57133	0.00033125	0.22815	0.00013228	579.7934891486034	37.938	0.35718	37.938	37.658	38.016	0	0.032679	-0.00020249	NaN	20.454	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4136400	+	+	8610	15894	6168	6218							-0.0007947973626869498
EEENVSHNKP	10	Unmodified	_EEENVSHNKP_					0	0	0			REV__ENSG00000103194|ENST00000219473|USP10	REV__ENSG00000103194|ENST00000219473|USP10	MULTI-SECPEP	A375_MHC_IP_R1	1	591.1485595703125	2	591.772916	1181.53128	-0.52955	-0.00031337	-1.0093	-0.0005973	-1.5389	-0.00091067	592.2733694012534	27.863	0.45401	27.863	27.634	28.088	0					14	8	2	0	0	0	0.90513	1	8569	8569		12.241	1.4167	1	2046900	+		8611	17257	6169	6219	8373	8373					-0.052224461266632716
EEENVVLKF	9	Unmodified	_EEENVVLKF_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000447760.1_1_2:106986223-106992976:+|nuORF;ENST00000426186.1_3_2:87098444-87121919:+|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-SECPEP	A375_MHC_IP_R1	1	554.1895751953125	2	553.790047	1105.56554	-0.55427	-0.00030695	0.10082	5.5835E-05	-0.45344	-0.00025111	553.7901723498454	74.103	0.71022	74.103	73.74	74.451	0					22	13	2	0	0	0	0.048303	1	27001	27001		93.166	53.216	1	3520500			8612	6006	6170	6220	8374	8374					0.01698002032230761
EEENVVLKF	9	Unmodified	_EEENVVLKF_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000447760.1_1_2:106986223-106992976:+|nuORF;ENST00000426186.1_3_2:87098444-87121919:+|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MSMS	A375_MHC_IP_R2	2	554.1895751953125	2	553.790047	1105.56554	-0.72256	-0.00040015	0.51173	0.00028339	-0.21083	-0.00011676	553.79038432698	73.357	0.8167	74.093	73.785	74.602	0.7354					29	15	3	0	0	0	0.0098926	1	27819	27819		118.07	36.178	1	3878200			8613	6006	6170	6220	8375	8375					0.01698002032230761
EEEPAPPGSKK	11	Unmodified	_EEEPAPPGSKK_					0	0	0			REV__ENSG00000083642|ENST00000315596|PDS5B	REV__ENSG00000083642|ENST00000315596|PDS5B	MULTI-SECPEP	A375_MHC_IP_R2	2	1169.1707763671875	1	1168.58444	1167.57717	0.20908	0.00024432	-4.2539	-0.0049711	-4.0449	-0.0047268	1168.5791459181733	119.74	0.30799	120.27	120.14	120.45	0.5321					6	5	2	0	0	0	0.98748	1	45605	45605		13.042	2.2185	1	16352000	+		8614	16808	6171	6221	8376	8376					8.199055559998669E-05
EEEPGIHSL	9	Unmodified	_EEEPGIHSL_					0	0	0		nc|ENSG00000149428|Q9Y4L1-2|HYOU1;ENST00000543287.5_1_11:118919950-118926831:-|nuORF;ENSG00000149428|ENST00000617285|HYOU1	nc|ENSG00000149428|Q9Y4L1-2|HYOU1	nc|ENSG00000149428|Q9Y4L1-2|HYOU1	MULTI-MSMS	A375_MHC_IP_R1	1	506.14288330078125	2	505.743096	1009.47164	-0.30324	-0.00015336	-0.20602	-0.0001042	-0.50926	-0.00025756	505.74290809554236	42.194	1.0132	42.194	41.777	42.79	0					46	19	4	0	0	0	0.0099443	1	14561	14561		120.45	46.028	1	30524000			8615	5804	6172	6222	8377	8377					-0.03271717070037994
EEEPGIHSL	9	Unmodified	_EEEPGIHSL_					0	0	0		nc|ENSG00000149428|Q9Y4L1-2|HYOU1;ENST00000543287.5_1_11:118919950-118926831:-|nuORF;ENSG00000149428|ENST00000617285|HYOU1	nc|ENSG00000149428|Q9Y4L1-2|HYOU1	nc|ENSG00000149428|Q9Y4L1-2|HYOU1	MULTI-MSMS	A375_MHC_IP_R2	2	505.6545104980469	2	505.743096	1009.47164	-0.84703	-0.00042838	-0.034726	-1.7563E-05	-0.88176	-0.00044594	505.7430461974081	41.501	0.96552	42.275	41.794	42.759	0.77451					48	18	4	0	0	0	0.0021165	2	15373	15330;15373		156.16	78.006	1	38389000			8616	5804	6172	6222	8378;8379	8379					-0.03271717070037994
EEEPGVRN	8	Unmodified	_EEEPGVRN_					0	0	0		ENSG00000146005|ENST00000274710|PSD2	ENSG00000146005|ENST00000274710|PSD2	ENSG00000146005|ENST00000274710|PSD2	MULTI-MSMS	A375_MHC_IP_R1	1	929.4718017578125	1	929.4323	928.425024	0.086035	7.9964E-05	0.52261	0.00048573	0.60864	0.00056569	929.4337468158692	110.89	0.81709	110.89	110.34	111.16	0					22	15	2	0	0	0	0.72761	1	40666	40666		26.341	3.1929	1	2396800			8617	5599	6173	6223	8380	8380					-0.04205156901321061
EEEPILWL	8	Unmodified	_EEEPILWL_					0	0	0		nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;ENSG00000126391|ENST00000317568|FRMD8;FRMD8|p.P327S|1|0.54|ENSG00000126391|chr11:65400775-65400775|C/T|missense_variant;nc|ENSG00000227942|Q9BZ68|FRMD8P1	nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1	nc|ENSG00000126391|Q9BZ67-2|FRMD8	MULTI-MSMS	A375_MHC_IP_R1	1	1030.5841064453125	1	1028.52989	1027.52261	0.37302	0.00038366	-0.21951	-0.00022577	0.15352	0.0001579	1028.5292129170018	111.64	0.76622	111.64	111.26	112.03	0					33	14	3	0	0	0	0.70843	1	40951	40951		32.117	11.663	1	10496000			8618	4040;14908	6174	6224	8381	8381					0.009952319748208538
EEEPLDYY	8	Unmodified	_EEEPLDYY_					0	0	0		ENSG00000132671|ENST00000255008|SSTR4	ENSG00000132671|ENST00000255008|SSTR4	ENSG00000132671|ENST00000255008|SSTR4	MULTI-SECPEP	A375_MHC_IP_R2	2	1057.5958251953125	1	1057.43605	1056.42877	0.068137	7.205E-05	3.8809	0.0041038	3.949	0.0041759	1057.4406789584166	123.26	0.2525	123.63	123.48	123.73	0.3766					6	4	2	0	0	0	0.94479	1	47362	47362		19.439	4.8573	1	9932100			8619	4436	6175	6225	8382	8382					-0.09718531918133522
EEEPLISWN	9	Unmodified	_EEEPLISWN_					0	0	0			REV__ENSG00000124659|ENST00000372876|TBCC	REV__ENSG00000124659|ENST00000372876|TBCC	MULTI-SECPEP	A375_MHC_IP_R2	2	1116.9207763671875	1	1116.52078	1115.5135	0.33524	0.00037431	0.4532	0.00050601	0.78844	0.00088031	1116.5223906871217	113.46	0.30843	114.17	113.92	114.23	0.70985					8	5	2	0	0	0	0.71541	1	42784	42784		16.942	2.104	1	2899500	+		8620	18317	6176	6226	8383	8383					-0.03963161381511782
EEEPLNIHS	9	Unmodified	_EEEPLNIHS_					0	0	0		nc|ENSG00000180376|A2RUB6-3|CCDC66;ENSG00000180376|ENST00000394672|CCDC66	nc|ENSG00000180376|A2RUB6-3|CCDC66	nc|ENSG00000180376|A2RUB6-3|CCDC66	MULTI-SECPEP	A375_MHC_IP_R1	1	534.7499389648438	2	534.253828	1066.4931	-0.68937	-0.0003683	2.6159	0.0013976	1.9265	0.0010293	534.2545155269884	60.425	1.0175	60.425	59.905	60.922	0					34	19	3	0	0	0	0.71341	1	21761	21761		13.042	2.8591	1	1747800			8621	8293	6177	6227	8384	8384					-0.0374833204132301
EEEPLNIHSF	10	Unmodified	_EEEPLNIHSF_					0	0	0		nc|ENSG00000180376|A2RUB6-3|CCDC66;ENSG00000180376|ENST00000394672|CCDC66	nc|ENSG00000180376|A2RUB6-3|CCDC66	nc|ENSG00000180376|A2RUB6-3|CCDC66	MULTI-SECPEP	A375_MHC_IP_R2	2	608.18798828125	2	607.788035	1213.56152	-0.61028	-0.00037092	-1.712	-0.0010405	-2.3223	-0.0014114	607.788010099592	72.178	0.55692	72.912	72.72	73.276	0.73421					16	10	2	0	0	0	0.17675	1	27406	27406		63.961	34.879	1	2668100			8622	8293	6178	6228	8385	8385					-0.03672087461495721
EEEPLPTKKW	10	Unmodified	_EEEPLPTKKW_					0	0	0		nc|ENSG00000163297|P58335-2|ANTXR2;ENSG00000163297|ENST00000403729|ANTXR2;nc|ENSG00000163297|P58335|ANTXR2	nc|ENSG00000163297|P58335-2|ANTXR2	nc|ENSG00000163297|P58335-2|ANTXR2	MULTI-SECPEP	A375_MHC_IP_R1	1	420.1846618652344	3	419.555561	1255.64485	-0.18392	-7.7163E-05	-0.03578	-1.5012E-05	-0.2197	-9.2175E-05	419.55548503582344	36.72	0.4061	36.72	36.489	36.895	0					13	7	2	0	0	0	0.92055	1	12285	12285		16.275	11.076	1	4880900			8623	6645	6179	6229	8386	8386					0.027256489863702882
EEEPPDRH	8	Unmodified	_EEEPPDRH_					0	0	0			REV__nc|ENSG00000033178|A0AVT1-2|UBA6	REV__nc|ENSG00000033178|A0AVT1-2|UBA6	MULTI-SECPEP	A375_MHC_IP_R1	1	505.1228942871094	2	504.722695	1007.43084	-0.29594	-0.00014937	0.90428	0.00045641	0.60834	0.00030704	504.72309967371217	42.273	0.40418	42.273	42.032	42.436	0					13	7	2	0	0	0	0.8824	1	14670	14670		30.225	5.5509	1	1331500	+		8624	16307	6180	6230	8387	8387					-0.07258058389663802
EEEPRERS	8	Unmodified	_EEEPRERS_					0	0	0		ENST00000479768.6_1_7:142643674-142659293:-|nuORF;ENSG00000197993|ENST00000355265|KEL	ENST00000479768.6_1_7:142643674-142659293:-|nuORF	ENST00000479768.6_1_7:142643674-142659293:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1031.580810546875	1	1031.47523	1030.46795	0.25843	0.00026656	2.3066	0.0023792	2.565	0.0026457	1031.4794181165628	113.48	0.46072	114.19	113.92	114.38	0.70985					15	8	3	0	0	0	0.73946	1	42847	42847		23.148	3.7094	1	3344800			8625	9218	6181	6231	8388	8388					-0.046063868438977806
EEEPRERS	8	Unmodified	_EEEPRERS_					0	0	0		ENST00000479768.6_1_7:142643674-142659293:-|nuORF;ENSG00000197993|ENST00000355265|KEL	ENST00000479768.6_1_7:142643674-142659293:-|nuORF	ENST00000479768.6_1_7:142643674-142659293:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	1031.47523	1030.46795	0.68014	0.00070155	2.7231	0.0028089	3.4033	0.0035104	1031.4771054919079	114.17	0.20395	114.17	114.06	114.26	0	-0.0090101	0.00029853	NaN	23.148	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3036400			8626	9218	6181	6231							-0.046063868438977806
EEEPRPPPAPA	11	Unmodified	_EEEPRPPPAPA_					0	0	0			REV__ENST00000393606.7_1_17:42295662-42297068:-|nuORF	REV__ENST00000393606.7_1_17:42295662-42297068:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1189.4923095703125	1	1189.58478	1188.5775	0.309	0.00036758	4.3898	0.005222	4.6988	0.0055896	1189.5915102939944	116.3	0.25453	116.3	116.09	116.34	0					6	4	2	0	0	0	0.69231	1	42635	42635		16.149	2.2431	1	3262000	+		8627	24295	6182	6232	8389	8389					-0.009243812245813388
EEEPSASSPQ	10	Unmodified	_EEEPSASSPQ_					0	0	0		ENSG00000186871|ENST00000334463|ERCC6L	ENSG00000186871|ENST00000334463|ERCC6L	ENSG00000186871|ENST00000334463|ERCC6L	MULTI-SECPEP	A375_MHC_IP_R2	2	1060.247314453125	1	1060.44292	1059.43565	0.079851	8.4678E-05	-3.0936	-0.0032806	-3.0137	-0.0031959	1061.4400714672436	123.88	0.30507	124.21	123.99	124.29	0.32969					6	5	2	0	0	0	0.78945	1	47756	47756		25.399	3.6527	1	9880200			8628	8787	6183	6233	8390	8390					-0.0916921903756247
EEEPVKKVL	9	Unmodified	_EEEPVKKVL_					0	0	0		nc|ENSG00000197451|Q99729-3|HNRNPAB;nc|ENSG00000197451|Q99729-4|HNRNPAB;nc|ENSG00000197451|Q99729|HNRNPAB;ENSG00000197451|ENST00000358344|HNRNPAB	nc|ENSG00000197451|Q99729-3|HNRNPAB	nc|ENSG00000197451|Q99729-3|HNRNPAB	MULTI-MSMS	A375_MHC_IP_R1	1	357.94110107421875	3	357.541252	1069.60193	-0.15722	-5.6213E-05	0.0084496	3.0211E-06	-0.14877	-5.3192E-05	357.541217800483	27.941	0.95918	27.941	27.684	28.643	0					48	18	4	0	0	0	0.068071	1	8511	8511		57.249	23.027	1	52698000			8629	9162	6184	6234	8391	8391					0.06990878928968414
EEEPVKKVL	9	Unmodified	_EEEPVKKVL_					0	0	0		nc|ENSG00000197451|Q99729-3|HNRNPAB;nc|ENSG00000197451|Q99729-4|HNRNPAB;nc|ENSG00000197451|Q99729|HNRNPAB;ENSG00000197451|ENST00000358344|HNRNPAB	nc|ENSG00000197451|Q99729-3|HNRNPAB	nc|ENSG00000197451|Q99729-3|HNRNPAB	MULTI-SECPEP	A375_MHC_IP_R1	1	536.2080078125	2	535.808239	1069.60193	-0.91893	-0.00049237	0.25583	0.00013708	-0.66309	-0.00035529	535.8083768652946	27.945	0.55412	27.945	27.684	28.238	0					29	10	4	0	0	0	0.054506	1	8525	8525		110.67	85.684	1	18301000			8630	9162	6184	6234	8392	8392					0.06990878928968414
EEEPVKKVL	9	Unmodified	_EEEPVKKVL_					0	0	0		nc|ENSG00000197451|Q99729-3|HNRNPAB;nc|ENSG00000197451|Q99729-4|HNRNPAB;nc|ENSG00000197451|Q99729|HNRNPAB;ENSG00000197451|ENST00000358344|HNRNPAB	nc|ENSG00000197451|Q99729-3|HNRNPAB	nc|ENSG00000197451|Q99729-3|HNRNPAB	MULTI-MSMS	A375_MHC_IP_R2	2	357.941162109375	3	357.541252	1069.60193	-0.16095	-5.7547E-05	-0.10751	-3.844E-05	-0.26847	-9.5987E-05	357.54116935690087	27.289	0.96506	27.968	27.69	28.655	0.67857					52	18	6	0	0	0	0.037085	1	9263	9263		69.338	40.844	1	54586000			8631	9162	6184	6234	8393	8393					0.06990878928968414
EEEPVKKVL	9	Unmodified	_EEEPVKKVL_					0	0	0		nc|ENSG00000197451|Q99729-3|HNRNPAB;nc|ENSG00000197451|Q99729-4|HNRNPAB;nc|ENSG00000197451|Q99729|HNRNPAB;ENSG00000197451|ENST00000358344|HNRNPAB	nc|ENSG00000197451|Q99729-3|HNRNPAB	nc|ENSG00000197451|Q99729-3|HNRNPAB	MULTI-SECPEP	A375_MHC_IP_R2	2	536.2078857421875	2	535.808239	1069.60193	-0.79609	-0.00042655	0.1249	6.6924E-05	-0.67119	-0.00035963	535.8082009772126	27.29	0.56005	27.969	27.741	28.301	0.67857					27	10	4	0	0	0	0.054506	1	9290	9290		110.67	80.038	1	17932000			8632	9162	6184	6234	8394	8394					0.06990878928968414
EEEPWFMP	8	Unmodified	_EEEPWFMP_					0	0	0			REV__nc|ENSG00000103037|Q8TBK2-2|SETD6	REV__nc|ENSG00000103037|Q8TBK2-2|SETD6	MULTI-SECPEP	A375_MHC_IP_R2	2	1064.2298583984375	1	1064.43936	1063.43208	0.10275	0.00010937	-0.37476	-0.00039891	-0.27201	-0.00028954	1065.4413358505726	120.33	1.5182	120.87	119.94	121.46	0.5321					44	29	2	0	0	0	0.90224	1	45683	45683		19.439	0	1	130610000	+		8633	17246	6185	6235	8395	8395					-0.09709560345118007
EEEQRKKQH	9	Unmodified	_EEEQRKKQH_					0	0	0		CFAP74|p.K375Q|1|0.34|ENSG00000142609|chr1:1968757-1968757|T/G|missense_variant	CFAP74|p.K375Q|1|0.34|ENSG00000142609|chr1:1968757-1968757|T/G|missense_variant	CFAP74|p.K375Q|1|0.34|ENSG00000142609|chr1:1968757-1968757|T/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	1213.00830078125	1	1211.61272	1210.60545	0.10772	0.00013052	-4.1641	-0.0050453	-4.0564	-0.0049148	1211.61138567514	118.02	0.25237	118.02	117.87	118.12	0					6	4	2	0	0	0	0.64808	1	43415	43415		11.64	1.4569	1	8966900			8634	375	6186	6236	8396	8396					0.008569417555236214
EEEQWKFQ	8	Unmodified	_EEEQWKFQ_					0	0	0		ENSG00000084731|ENST00000264712|KIF3C;ENST00000488341.5_1_2:26174656-26179274:-|nuORF	ENSG00000084731|ENST00000264712|KIF3C	ENSG00000084731|ENST00000264712|KIF3C	MULTI-MSMS	A375_MHC_IP_R2	2	562.655517578125	2	562.256371	1122.49819	-0.84794	-0.00047676	-0.19667	-0.00011058	-1.0446	-0.00058734	562.2561730559768	56.267	0.4073	57.017	56.796	57.203	0.75014					15	7	3	0	0	0	0.77488	1	21299	21299		13.508	0.46542	1	2098400			8635	1802	6187	6237	8397	8397					-0.058160281787195345
EEEREEDL	8	Unmodified	_EEEREEDL_					0	0	0		ENSG00000170893|ENST00000302649|TRH	ENSG00000170893|ENST00000302649|TRH	ENSG00000170893|ENST00000302649|TRH	MULTI-SECPEP	A375_MHC_IP_R2	2	524.3748168945312	2	524.725101	1047.43565	-0.92599	-0.00048589	-0.6185	-0.00032454	-1.5445	-0.00081043	525.2246970314454	56.791	0.71455	57.541	57.203	57.918	0.75014					20	13	2	0	0	0	0.90224	1	21384	21384		13.508	0	1	1117200			8636	7556	6188	6238	8398	8398					-0.08617219037569157
EEEREFRKQF	10	Unmodified	_EEEREFRKQF_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MSMS	A375_MHC_IP_R1	1	466.6310119628906	3	466.565119	1396.67353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.605	1	23.605	23.105	24.105	0								0	0	0	0.14983	1	6514	6514		20.581	3.5324	1				8637	3055	6189	6239	8399	8399					-0.008942333844970562
EEERELLQ	8	Unmodified	_EEERELLQ_					0	0	0			REV__nc|ENSG00000131626|Q13136-2|PPFIA1;REV__nc|ENSG00000143847|O75335|PPFIA4	REV__nc|ENSG00000131626|Q13136-2|PPFIA1	MULTI-SECPEP	A375_MHC_IP_R2	2	523.6507568359375	2	523.261653	1044.50875	-0.99161	-0.00051887	0.60756	0.00031792	-0.38405	-0.00020096	523.2617357151378	25.967	0.25389	26.627	26.5	26.754	0.65992					6	4	2	0	0	0	0.972	1	8789	8789		7.2892	0	1	1107800	+		8638	18614;19392	6190	6240	8400	8400					-0.011720455242766548
EEERLPRPDP	10	Unmodified	_EEERLPRPDP_					0	0	0			REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	MULTI-SECPEP	A375_MHC_IP_R1	1	412.4596252441406	3	413.210565	1236.60986	0.42287	0.00017473	2.2671	0.00093678	2.6899	0.0011115	413.2116683073389	39.237	0.30647	39.237	39.085	39.391	0					8	5	2	0	0	0	0.93999	1	13439	13439		7.4771	2.1802	1	713960	+		8639	17107	6191	6241	8401	8401					0.0010240617843919608
EEERLPRPDP	10	Unmodified	_EEERLPRPDP_					0	0	0			REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	MULTI-MATCH	A375_MHC_IP_R2	2		3	413.210565	1236.60986	-0.36387	-0.00015036	2.3545	0.00097291	1.9906	0.00082256	413.211497500216	38.4	0.40464	39.174	38.997	39.401	0.77451	-0.031453	6.4913E-05	NaN	7.4771	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1626500	+		8640	17107	6191	6241							0.0010240617843919608
EEERLSIQNF	10	Unmodified	_EEERLSIQNF_					0	0	0		RB1|p.L743*|1|0.55|ENSG00000139687|chr13:48465013-48465043|TTGATCAAAGAAGAGGAGTATGATTCTATTA/-|frameshift_variant;RB1|p.L769Ffs*26|1|0.65|ENSG00000139687|chr13:48465088-48465089|-/T|frameshift_variant;RB1|p.L797Yfs*13|1|0.51|ENSG00000139687|chr13:48465268-48465268|T/-|frameshift_variant;ENSG00000139687|ENST00000267163|RB1	RB1|p.L743*|1|0.55|ENSG00000139687|chr13:48465013-48465043|TTGATCAAAGAAGAGGAGTATGATTCTATTA/-|frameshift_variant	RB1|p.L743*|1|0.55|ENSG00000139687|chr13:48465013-48465043|TTGATCAAAGAAGAGGAGTATGATTCTATTA/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	633.2117309570312	2	632.812042	1263.60953	-0.57998	-0.00036702	0.72481	0.00045867	0.14484	9.1655E-05	632.8125135054395	68.849	1.0667	68.849	68.26	69.326	0					54	20	4	0	0	0	0.010033	1	25049	25049		93.938	10.509	1	16417000			8641	5102	6192	6242	8402	8402					-0.011730135414154574
EEERLSIQNF	10	Unmodified	_EEERLSIQNF_					0	0	0		RB1|p.L743*|1|0.55|ENSG00000139687|chr13:48465013-48465043|TTGATCAAAGAAGAGGAGTATGATTCTATTA/-|frameshift_variant;RB1|p.L769Ffs*26|1|0.65|ENSG00000139687|chr13:48465088-48465089|-/T|frameshift_variant;RB1|p.L797Yfs*13|1|0.51|ENSG00000139687|chr13:48465268-48465268|T/-|frameshift_variant;ENSG00000139687|ENST00000267163|RB1	RB1|p.L743*|1|0.55|ENSG00000139687|chr13:48465013-48465043|TTGATCAAAGAAGAGGAGTATGATTCTATTA/-|frameshift_variant	RB1|p.L743*|1|0.55|ENSG00000139687|chr13:48465013-48465043|TTGATCAAAGAAGAGGAGTATGATTCTATTA/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	634.2266845703125	2	632.812042	1263.60953	-0.69648	-0.00044074	0.69426	0.00043934	-0.0022228	-1.4066E-06	632.8124725519217	68.184	0.96386	68.919	68.409	69.373	0.73512					52	18	4	0	0	0	0.27942	1	25829	25829		55.503	26.421	1	17473000			8642	5102	6192	6242	8403	8403					-0.011730135414154574
EEERNHRQMIK	11	Unmodified	_EEERNHRQMIK_					0	0	0		nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A	nc|ENSG00000156697|Q9BVJ6-3|UTP14A	nc|ENSG00000156697|Q9BVJ6-3|UTP14A	MULTI-SECPEP	A375_MHC_IP_R2	2	367.96044921875	4	368.1874	1468.72049	-0.058828	-2.166E-05	-2.6925	-0.00099133	-2.7513	-0.001013	368.1864714250004	18.849	0.25997	19.452	19.423	19.683	0.60308					9	6	2	0	0	0	0.99681	1	5710	5710		7.0371	0.80273	1	35093000			8643	6206	6193	6243	8404	8404					0.004883028949961954
EEERRRQEKWQ	11	Unmodified	_EEERRRQEKWQ_					0	0	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MSMS	A375_MHC_IP_R2	2	787.3922119140625	2	787.395127	1572.7757	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.97	1	113.7	113.2	114.2	0.72458								0	0	0	0.16249	1	42593	42593		5.7319	0	1				8644	1345	6194	6244	8405	8405					0.012224326871319136
EEERRRQG	8	Unmodified	_EEERRRQG_					0	0	0			REV__ENST00000584122.1_1_18:658394-658538:+|nuORF	REV__ENST00000584122.1_1_18:658394-658538:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1061.751708984375	1	1059.52899	1058.52172	0.14682	0.00015556	1.217	0.0012895	1.3638	0.001445	1060.5330863219806	133.65	0.25305	133.81	133.65	133.91	0.16487					9	4	3	0	0	0	0.77624	1	52596	52596		8.5933	0	1	1856700	+		8645	26369	6195	6245	8406	8406					-0.005201696215181073
EEERRRRP	8	Unmodified	_EEERRRRP_					0	0	0		ENST00000327906.7_1_3:52444811-52444937:+|nuORF	ENST00000327906.7_1_3:52444811-52444937:+|nuORF	ENST00000327906.7_1_3:52444811-52444937:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	564.6719970703125	2	564.305052	1126.59555	-0.65267	-0.00036831	0.60582	0.00034187	-0.046854	-2.644E-05	564.806601641227	66.221	0.30684	66.959	66.833	67.14	0.73811					6	5	2	0	0	0	0.95423	1	25126	25126		18.135	0	1	506770			8646	10746	6196	6246	8407	8407					0.037317985407980814
EEERYFRHY	9	Unmodified	_EEERYFRHY_					0	0	0		nc|ENSG00000130770|Q9UII2-2|ATP5IF1	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	MULTI-MSMS	A375_MHC_IP_R1	1	443.9386291503906	3	443.538793	1327.59455	-0.31411	-0.00013932	-0.046062	-2.043E-05	-0.36017	-0.00015975	443.53880959749995	23.941	0.45792	23.941	23.838	24.296	0					13	8	3	0	0	0	0.037683	1	6698	6698		55.235	42.379	1	7439300			8647	14601	6197	6247	8408	8408					-0.05614460618767225
EEERYFRHY	9	Unmodified	_EEERYFRHY_					0	0	0		nc|ENSG00000130770|Q9UII2-2|ATP5IF1	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	MULTI-SECPEP	A375_MHC_IP_R2	2	444.2726135253906	3	443.538793	1327.59455	-0.68527	-0.00030394	0.090918	4.0326E-05	-0.59435	-0.00026362	443.53872502782474	23.223	0.3047	23.853	23.675	23.979	0.63014					10	5	2	0	0	0	0.76106	1	7452	7452		9.544	3.3096	1	8286400			8648	14601	6197	6247	8409	8409					-0.05614460618767225
EEESDAEQY	9	Unmodified	_EEESDAEQY_					0	0	0			REV__ENSG00000206190|ENST00000555815|ATP10A	REV__ENSG00000206190|ENST00000555815|ATP10A	MSMS	A375_MHC_IP_R1	1	550.1644897460938	2	550.206741	1098.39893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.712	1	64.712	64.212	65.212	0								0	0	0	0.15486	1	23419	23419		8.5933	0	1		+		8649	22592	6198	6248	8410	8410					-0.14633515654122675
EEESDAEQY	9	Unmodified	_EEESDAEQY_					0	0	0			REV__ENSG00000206190|ENST00000555815|ATP10A	REV__ENSG00000206190|ENST00000555815|ATP10A	MSMS	A375_MHC_IP_R1	1	550.163818359375	2	550.206741	1098.39893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.283	1	65.283	64.783	65.783	0								0	0	0	0.15486	1	23633	23633		8.5933	0	1		+		8650	22592	6198	6248	8411	8411					-0.14633515654122675
EEESDAEQY	9	Unmodified	_EEESDAEQY_					0	0	0			REV__ENSG00000206190|ENST00000555815|ATP10A	REV__ENSG00000206190|ENST00000555815|ATP10A	MSMS	A375_MHC_IP_R1	1	550.1640625	2	550.206741	1098.39893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.846	1	65.846	65.346	66.346	0								0	0	0	0.15486	1	23844	23844		8.5933	0	1		+		8651	22592	6198	6248	8412	8412					-0.14633515654122675
EEESDAEQY	9	Unmodified	_EEESDAEQY_					0	0	0			REV__ENSG00000206190|ENST00000555815|ATP10A	REV__ENSG00000206190|ENST00000555815|ATP10A	MSMS	A375_MHC_IP_R1	1	550.1641845703125	2	550.206741	1098.39893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.434	1	66.434	65.934	66.934	0								0	0	0	0.15486	1	24057	24057		8.5933	0	1		+		8652	22592	6198	6248	8413	8413					-0.14633515654122675
EEESDAEQY	9	Unmodified	_EEESDAEQY_					0	0	0			REV__ENSG00000206190|ENST00000555815|ATP10A	REV__ENSG00000206190|ENST00000555815|ATP10A	MSMS	A375_MHC_IP_R1	1	550.1739501953125	2	550.206741	1098.39893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.532	1	68.532	68.032	69.032	0								0	0	0	0.15486	1	24850	24850		8.5933	0	1		+		8653	22592	6198	6248	8414	8414					-0.14633515654122675
EEESDPLPK	9	Unmodified	_EEESDPLPK_					0	0	0			REV__ENSG00000140396|ENST00000452400|NCOA2	REV__ENSG00000140396|ENST00000452400|NCOA2	MULTI-SECPEP	A375_MHC_IP_R2	2	1042.8204345703125	1	1043.48915	1042.48187	0.26479	0.00027631	-3.1551	-0.0032923	-2.8903	-0.003016	1044.4889475878358	113.65	0.8571	114.36	114.02	114.88	0.70985					18	16	2	0	0	0	0.62767	1	42799	42799		11.64	0	1	5292900	+		8654	19210	6199	6249	8415	8415					-0.037671541354711735
EEESDSCLSW	10	Unmodified	_EEESDSCLSW_					0	0	0			REV__NTS|p.T91Sfs*4|1|0.07|ENSG00000133636|chr12:85878480-85878481|-/GT|frameshift_variant	REV__NTS|p.T91Sfs*4|1|0.07|ENSG00000133636|chr12:85878480-85878481|-/GT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	592.1748657226562	2	592.724243	1183.43393	-0.35075	-0.0002079	2.1626	0.0012818	1.8118	0.0010739	592.7256507744232	87.823	0.35611	87.823	87.644	88	0					9	6	2	0	0	0	0.9269	1	32264	32264		10.824	2.2306	1	1532400	+		8655	18724	6200	6250	8416	8416					-0.15044596117832043
EEESEDEEY	9	Unmodified	_EEESEDEEY_					0	0	0		ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	MSMS	A375_MHC_IP_R1	1	579.6759643554688	2	579.701488	1157.38842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.118	1	90.118	89.618	90.618	0								0	0	0	0.15486	1	33116	33116		4.756	0	1				8656	9802	6201	6251	8417	8417					-0.18397543099217728
EEESEDEEY	9	Unmodified	_EEESEDEEY_					0	0	0		ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	MSMS	A375_MHC_IP_R1	1	579.6951293945312	2	579.701488	1157.38842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.206	1	90.206	89.706	90.706	0								0	0	0	0.15486	1	33149	33149		8.5933	0	1				8657	9802	6201	6251	8418	8418					-0.18397543099217728
EEESFRKEF	9	Unmodified	_EEESFRKEF_					0	0	0		nc|ENSG00000117906|Q14257-2|RCN2	nc|ENSG00000117906|Q14257-2|RCN2	nc|ENSG00000117906|Q14257-2|RCN2	MULTI-SECPEP	A375_MHC_IP_R2	2	400.3033752441406	3	400.855899	1199.54587	-0.051075	-2.0474E-05	4.1363	0.001658	4.0852	0.0016376	401.1915378569028	30.813	0.75662	31.532	30.962	31.719	0.71857					26	14	3	0	0	0	0.65527	1	10787	10787		17.113	0	1	4398300			8658	14561	6202	6252	8419	8419					-0.04592373978516662
EEESKPPI	8	Unmodified	_EEESKPPI_					0	0	0		nc|ENSG00000167525|Q8NCQ7-2|PROCA1;nc|ENSG00000167525|Q8NCQ7-3|PROCA1;nc|ENSG00000167525|Q8NCQ7|PROCA1;ENSG00000167525|ENST00000682792|PROCA1	nc|ENSG00000167525|Q8NCQ7-2|PROCA1	nc|ENSG00000167525|Q8NCQ7-2|PROCA1	MULTI-MSMS	A375_MHC_IP_R1	1	464.64862060546875	2	464.73474	927.454927	-0.16256	-7.5549E-05	-0.019423	-9.0266E-06	-0.18199	-8.4576E-05	464.7349593594717	70.813	0.4595	70.813	70.494	70.953	0					10	8	2	0	0	0	0.77603	1	25755	25755		9.3474	0	1	952350			8659	7190	6203	6253	8420	8420					-0.011702179559961223
EEESQRLSW	9	Unmodified	_EEESQRLSW_					0	0	0		ENSG00000110274|ENST00000278935|CEP164;nc|ENSG00000110274|Q9UPV0-2|CEP164;ENST00000533223.1_1_11:117257895-117280842:+|nuORF	ENSG00000110274|ENST00000278935|CEP164	ENSG00000110274|ENST00000278935|CEP164	MULTI-SECPEP	A375_MHC_IP_R1	1	582.669677734375	2	582.27001	1162.52547	-0.39075	-0.00022752	0.019868	1.1568E-05	-0.37088	-0.00021595	582.2698988804934	46.876	0.45988	46.876	46.647	47.107	0					13	8	2	0	0	0	0.14606	1	16503	16503		63.961	36.332	1	2341600			8660	2926	6204	6254	8421	8421					-0.04929544638321204
EEESQRLSW	9	Unmodified	_EEESQRLSW_					0	0	0		ENSG00000110274|ENST00000278935|CEP164;nc|ENSG00000110274|Q9UPV0-2|CEP164;ENST00000533223.1_1_11:117257895-117280842:+|nuORF	ENSG00000110274|ENST00000278935|CEP164	ENSG00000110274|ENST00000278935|CEP164	MULTI-MATCH	A375_MHC_IP_R2	2		2	582.27001	1162.52547	-0.29496	-0.00017174	0.0042085	2.4505E-06	-0.29075	-0.00016929	582.2697975116781	46.218	0.50508	46.983	46.654	47.159	0.76519	0.053832	-9.3968E-06	NaN	63.961	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1674500			8661	2926	6204	6254							-0.04929544638321204
EEESVGLLLY	10	Unmodified	_EEESVGLLLY_					0	0	0			REV__nc|ENSG00000099331|Q13459-2|MYO9B	REV__nc|ENSG00000099331|Q13459-2|MYO9B	MSMS	A375_MHC_IP_R1	1	576.190185546875	2	576.295162	1150.57577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.363	1	91.363	90.863	91.863	0								0	0	0	0.14925	1	33569	33569		19.257	3.4098	1		+		8662	17018	6205	6255	8422	8422					0.006505649668497426
EEESWNAYPY	10	Unmodified	_EEESWNAYPY_					0	0	0		nc|ENSG00000110697|O00562-2|PITPNM1;ENSG00000110697|ENST00000356404|PITPNM1;ENST00000529203.1_1_11:67269454-67270084:-|nuORF	nc|ENSG00000110697|O00562-2|PITPNM1	nc|ENSG00000110697|O00562-2|PITPNM1	MULTI-MSMS	A375_MHC_IP_R2	2	645.9551391601562	2	644.26185	1286.50915	-1.2254	-0.00078949	-0.39384	-0.00025373	-1.6193	-0.0010432	644.2616017253944	33.723	0.65734	34.475	34.146	34.803	0.75225					38	12	4	0	0	0	0.71245	1	12052	12052		6.7232	3.4419	1	27750000			8663	2939	6206	6256	8423	8423					-0.12264670595072857
EEETEKIY	8	Unmodified	_EEETEKIY_					0	0	0		nc|ENSG00000258890|Q96GE4-2|CEP95;ENSG00000258890|ENST00000556440|CEP95;ENST00000579637.1_1_17:62525485-62528217:+|nuORF	nc|ENSG00000258890|Q96GE4-2|CEP95	nc|ENSG00000258890|Q96GE4-2|CEP95	MULTI-MSMS	A375_MHC_IP_R2	2	520.7326049804688	2	520.742762	1039.47097	-0.62282	-0.00032433	-0.23277	-0.00012121	-0.85558	-0.00044554	520.7425998617973	83.032	0.90903	83.771	83.294	84.203	0.73962					38	17	3	0	0	0	0.77515	1	31419	31419		12.532	12.532	1	13340000			8664	9923	6207	6257	8424	8424					-0.04718556509737937
EEETGEETKLK	11	Unmodified	_EEETGEETKLK_					0	0	0		ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENST00000549479.1_1_12:76462659-76467999:-|nuORF	ENSG00000187109|ENST00000618691|NAP1L1	ENSG00000187109|ENST00000618691|NAP1L1	MSMS	A375_MHC_IP_R2	2	646.5736083984375	2	646.814447	1291.61434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.63	1	112.35	111.85	112.85	0.72458								0	0	0	0.16203	1	42086	42086		8.1555	0.24537	1				8665	8806	6208	6258	8425	8425					-0.01980174189338868
EEETHMKK	8	Unmodified	_EEETHMKK_					0	0	0		ENST00000472831.5_1_5:176884436-176895158:-|nuORF;nc|ENSG00000113758|Q16643|DBN1;nc|ENSG00000113758|Q16643-2|DBN1;ENSG00000113758|ENST00000393565|DBN1	ENST00000472831.5_1_5:176884436-176895158:-|nuORF	ENST00000472831.5_1_5:176884436-176895158:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1032.2784423828125	1	1031.48262	1030.47534	0.4333	0.00044694	-2.7146	-0.0028001	-2.2813	-0.0023531	1032.483676404626	108.57	0.20174	108.57	108.46	108.66	0					5	3	2	0	0	0	0.75322	1	39807	39807		19.439	0	1	1976800			8666	3182	6209	6259	8426	8426					-0.038673705678547776
EEEVEKQLQ	9	Unmodified	_EEEVEKQLQ_					0	0	0			REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	MULTI-SECPEP	A375_MHC_IP_R1	1	378.25634765625	3	377.855787	1130.54553	0.079612	3.0082E-05	2.6894	0.0010162	2.769	0.0010463	377.8564886974283	23.704	0.96458	23.704	23.483	24.447	0					26	18	2	0	0	0	0.20059	1	6633	6633		43.982	12.714	1	4202200	+		8667	27163	6210	6260	8427	8427					-0.014517936983793334
EEEVEKSLK	9	Unmodified	_EEEVEKSLK_					0	0	0		tr|U7T5K4|U7T5K4_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00151PE=4SV=1	tr|U7T5K4|U7T5K4_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00151PE=4SV=1	tr|U7T5K4|U7T5K4_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00151PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	364.5985107421875	3	364.1924	1089.55537	-0.45734	-0.00016656	4.4285	0.0016128	3.9712	0.0014463	364.52910182406526	33.52	0.30419	34.272	34.146	34.45	0.75225					6	5	2	0	0	0	0.65246	1	11974	11974		10.8	0	1	1418800			8668	30024	6211	6261	8428	8428					0.014173943069863526
EEEVELEPVKE	11	Unmodified	_EEEVELEPVKE_					0	0	0			REV__nc|ENSG00000130956|Q5JVS0-2|HABP4	REV__nc|ENSG00000130956|Q5JVS0-2|HABP4	MULTI-SECPEP	A375_MHC_IP_R2	2	665.7240600585938	2	665.324647	1328.63474	-0.86919	-0.00057829	-0.14749	-9.8126E-05	-1.0167	-0.00067642	665.3244034367916	70.781	0.45605	71.515	71.2	71.656	0.73421					13	8	2	0	0	0	0.98524	1	26827	26827		10.8	0.64894	1	8234800	+		8669	27222	6212	6262	8429	8429					-0.01643003529534326
EEEVLSELKN	10	Unmodified	_EEEVLSELKN_					0	0	0		tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1	tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1	tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	1189.3922119140625	1	1189.59467	1188.5874	0.309	0.00036758	-3.9291	-0.004674	-3.6201	-0.0043064	1189.5915102939944	116.3	0.25453	116.3	116.09	116.34	0					6	4	2	0	0	0	0.6806	1	42665	42665		14.838	0	1	3262000			8670	29410	6213	6263	8430	8430					0.0006476199014286976
EEEVPKRKW	9	Unmodified	_EEEVPKRKW_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MULTI-SECPEP	A375_MHC_IP_R1	1	401.2839050292969	3	400.8839	1199.62987	-0.42452	-0.00017018	0.62827	0.00025186	0.20375	8.1681E-05	400.8840753793117	19.544	0.55934	19.544	19.318	19.877	0					30	10	4	0	0	0	0.57806	1	4858	4858		30.703	5.7125	1	17772000			8671	4313	6214	6264	8431	8431					0.03804201909042604
EEEVPQDHTKT	11	Unmodified	_EEEVPQDHTKT_					0	0	0			REV__ENSG00000182898|ENST00000368806|TCHHL1	REV__ENSG00000182898|ENST00000368806|TCHHL1	MULTI-MSMS	A375_MHC_IP_R2	2	657.2057495117188	2	656.804414	1311.59427	-0.82995	-0.00054512	1.348	0.00088539	0.51808	0.00034027	657.3060212199579	70.063	0.40601	70.798	70.591	70.997	0.73421					12	7	2	0	0	0	0.72649	1	26585	26585		12.241	0	1	3069300	+		8672	21715	6215	6265	8432	8432					-0.04905925129287425
EEEVQRRQ	8	Unmodified	_EEEVQRRQ_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-SECPEP	A375_MHC_IP_R2	2	1073.29541015625	1	1073.53341	1072.52613	0.26808	0.0002878	-0.18787	-0.00020168	0.080217	8.6116E-05	1073.5350054583998	115	0.86934	115.69	115.12	115.98	0.68999					23	16	2	0	0	0	0.97144	1	43167	43167		14.582	0	1	5193900	+		8673	21494	6216	6266	8433	8433					-0.007227051986319566
EEEVQVDPRKY	11	Unmodified	_EEEVQVDPRKY_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MULTI-MSMS	A375_MHC_IP_R1	1	464.964599609375	3	464.564896	1390.67286	-0.11638	-5.4067E-05	-0.10229	-4.7522E-05	-0.21867	-0.00010159	464.5647684801656	35.2	0.76453	35.2	34.861	35.625	0					29	14	3	0	0	0	0.29602	3	11687	11678;11687;11737		47.053	22.096	1	5276800			8674	1483	6217	6267	8434;8435;8436	8435					-0.006850728241943216
EEEVQVDPRKY	11	Unmodified	_EEEVQVDPRKY_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MULTI-MSMS	A375_MHC_IP_R2	2	464.9645080566406	3	464.564896	1390.67286	-0.81517	-0.0003787	-0.028781	-1.3371E-05	-0.84395	-0.00039207	464.5649063099451	34.637	0.81222	35.401	34.966	35.778	0.76338					32	15	3	0	0	0	0.41048	2	12481	12427;12481		38.161	20.048	1	6648200			8675	1483	6217	6267	8437;8438	8438					-0.006850728241943216
EEEVRFTHWN	10	Unmodified	_EEEVRFTHWN_					0	0	0		ENSG00000260314|ENST00000569591|MRC1	ENSG00000260314|ENST00000569591|MRC1	ENSG00000260314|ENST00000569591|MRC1	MULTI-MSMS	A375_MHC_IP_R2	2	674.2089233398438	2	673.809833	1345.60511	-0.65293	-0.00043995	-1.3285	-0.00089518	-1.9815	-0.0013351	673.8090617600008	70.126	0.35507	70.86	70.642	70.997	0.73421					11	6	2	0	0	0	0.70496	1	26595	26595		10.074	4.3421	1	2263700			8676	9931	6218	6268	8439	8439					-0.053864779643163274
EEEVTTLFDLF	11	Unmodified	_EEEVTTLFDLF_					0	0	0			REV__nc|ENSG00000243244|Q9Y6Q2-3|STON1	REV__nc|ENSG00000243244|Q9Y6Q2-3|STON1	MULTI-SECPEP	A375_MHC_IP_R2	2	448.0951843261719	3	448.218614	1341.63401	-0.29729	-0.00013325	-2.6476	-0.0011867	-2.9449	-0.00132	448.55143350725706	41.91	0.20406	42.684	42.555	42.759	0.77451					5	3	2	0	0	0	0.99625	1	15550	15550		7.4771	0.43998	1	625850	+		8677	16545	6219	6269	8440	8440					-0.023137981785566808
EEEWMGLL	8	Unmodified	_EEEWMGLL_					0	0	0		nc|ENSG00000162711|Q96P20-3|NLRP3;ENST00000474792.1_1_1:247582090-247588902:+|nuORF;nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;nc|ENSG00000162711|Q96P20|NLRP3	nc|ENSG00000162711|Q96P20-3|NLRP3	nc|ENSG00000162711|Q96P20-3|NLRP3	MSMS	A375_MHC_IP_R1	1	503.6841125488281	2	503.731143	1005.44773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.236	1	85.236	84.736	85.736	0								0	0	0	0.16876	1	31236	31236		15.768	1.1865	1				8678	6579	6220	6270	8441	8441					-0.05477273828057605
EEEWVKLP	8	Unmodified	_EEEWVKLP_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	A375_MHC_IP_R1	1	1031.4359130859375	1	1029.52514	1028.51786	0.50092	0.00051571	-0.10973	-0.00011297	0.39119	0.00040274	1029.5249299960972	116.16	0.66115	116.16	115.83	116.5	0					25	12	3	0	0	0	0.77123	1	42584	42584		14.582	0	1	9112500			8679	7941	6221	6271	8442	8442					0.004743478320506256
EEEYMGLRT	9	Unmodified	_EEEYMGLRT_					0	0	0		ENST00000514905.5_1_5:76414328-76430243:+|nuORF	ENST00000514905.5_1_5:76414328-76430243:+|nuORF	ENST00000514905.5_1_5:76414328-76430243:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	564.6719970703125	2	564.255514	1126.49647	-0.57775	-0.000326	-0.17473	-9.859E-05	-0.75247	-0.00042459	564.7553316952102	66.841	1.5793	67.577	66.575	68.155	0.73631					47	30	3	0	0	0	0.73363	1	25126	25126		15.847	5.0233	1	2011900			8680	12942	6222	6272	8443	8443					-0.06171405258987761
EEEYQIQKW	9	Unmodified	_EEEYQIQKW_					0	0	0		ENST00000467560.5_1_17:17921865-17924571:-|nuORF;ENSG00000171953|ENST00000474627|ATPAF2	ENST00000467560.5_1_17:17921865-17924571:-|nuORF	ENST00000467560.5_1_17:17921865-17924571:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	627.1954956054688	2	626.79586	1251.57717	-0.46783	-0.00029323	0.29435	0.0001845	-0.17348	-0.00010874	626.7959916884885	56.611	1.5764	56.611	56.092	57.669	0					21	13	2	0	0	0	0.0015808	2	20294	20294;20362		155.03	115.07	1	3498000			8681	7663	6223	6273	8444;8445	8444					-0.0385580094443867
EEEYQIQKW	9	Unmodified	_EEEYQIQKW_					0	0	0		ENST00000467560.5_1_17:17921865-17924571:-|nuORF;ENSG00000171953|ENST00000474627|ATPAF2	ENST00000467560.5_1_17:17921865-17924571:-|nuORF	ENST00000467560.5_1_17:17921865-17924571:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	627.1962280273438	2	626.79586	1251.57717	-0.99099	-0.00062115	0.64729	0.00040572	-0.3437	-0.00021543	626.796301277408	55.931	0.562	56.681	56.489	57.051	0.75015					20	10	3	0	0	0	0.0017027	2	21136	21136;21219		147.06	98.713	1	3797900			8682	7663	6223	6273	8446;8447	8446					-0.0385580094443867
EEFAAALYHF	10	Unmodified	_EEFAAALYHF_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	A375_MHC_IP_R1	1	598.6842041015625	2	599.282389	1196.55022	-0.33406	-0.0002002	-2.0739	-0.0012429	-2.408	-0.0014431	599.7819589983436	102.28	0.65842	102.28	101.85	102.51	0					16	12	2	0	0	0	0.33306	1	37588	37588		38.151	15.003	1	2197900			8683	4093	6224	6274	8448	8448					-0.04018864764998398
EEFAAALYHF	10	Unmodified	_EEFAAALYHF_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	A375_MHC_IP_R2	2	600.0070190429688	2	599.282389	1196.55022	-0.44307	-0.00026553	-0.82627	-0.00049517	-1.2693	-0.00076069	599.2820404366098	101.45	0.55801	102.22	102.01	102.57	0.76428					17	10	2	0	0	0	0.22276	1	38516	38516		46.921	31.074	1	1800000			8684	4093	6224	6274	8449	8449					-0.04018864764998398
EEFAEGSKI	9	Unmodified	_EEFAEGSKI_					0	0	0		ENSG00000152795|ENST00000295470|HNRNPDL;nc|ENSG00000152795|O14979-2|HNRNPDL;nc|ENSG00000152795|O14979-3|HNRNPDL	ENSG00000152795|ENST00000295470|HNRNPDL	ENSG00000152795|ENST00000295470|HNRNPDL	MULTI-MSMS	A375_MHC_IP_R1	1	505.6451721191406	2	505.245472	1008.47639	-0.27384	-0.00013836	0.05947	3.0047E-05	-0.21437	-0.00010831	505.2454132473507	35.937	0.91569	35.937	35.676	36.592	0					40	17	4	0	0	0	0.0090499	1	11979	11979		100.09	43.914	1	14098000			8685	5985	6225	6275	8450	8450					-0.027508329272677656
EEFAEGSKI	9	Unmodified	_EEFAEGSKI_					0	0	0		ENSG00000152795|ENST00000295470|HNRNPDL;nc|ENSG00000152795|O14979-2|HNRNPDL;nc|ENSG00000152795|O14979-3|HNRNPDL	ENSG00000152795|ENST00000295470|HNRNPDL	ENSG00000152795|ENST00000295470|HNRNPDL	MULTI-MSMS	A375_MHC_IP_R2	2	505.66571044921875	2	505.245472	1008.47639	-0.93495	-0.00047238	0.84647	0.00042768	-0.088476	-4.4702E-05	505.24595519619845	35.219	0.8599	35.983	35.727	36.587	0.76338					41	16	4	0	0	0	0.0090499	2	12760	12733;12760		100.09	37.518	1	15068000			8686	5985	6225	6275	8451;8452	8452					-0.027508329272677656
EEFAKYDL	8	Unmodified	_EEFAKYDL_					0	0	0			REV__nc|ENSG00000118729|O14958-2|CASQ2	REV__nc|ENSG00000118729|O14958-2|CASQ2	MULTI-MSMS	A375_MHC_IP_R1	1	507.6802978515625	2	507.742565	1013.47058	-0.33911	-0.00017218	-2.9896	-0.0015179	-3.3287	-0.0016901	508.2423715997298	55.788	0.15412	55.788	55.687	55.841	0					4	2	2	0	0	0	0.77123	1	19947	19947		14.582	0	1	555130	+		8687	27194	6226	6276	8453	8453					-0.035619314389577994
EEFAKYDL	8	Unmodified	_EEFAKYDL_					0	0	0			REV__nc|ENSG00000118729|O14958-2|CASQ2	REV__nc|ENSG00000118729|O14958-2|CASQ2	MULTI-MATCH	A375_MHC_IP_R2	2		2	507.742565	1013.47058	-0.86942	-0.00044144	-5.1095	-0.0025943	-5.9789	-0.0030357	507.74015609832196	55.105	0.25499	55.855	55.729	55.984	0.75075	0.033743	-0.0014701	NaN	14.582	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	760310	+		8688	27194	6226	6276							-0.035619314389577994
EEFDAITKAY	10	Unmodified	_EEFDAITKAY_					0	0	0		ENSG00000112210|ENST00000468148|RAB23	ENSG00000112210|ENST00000468148|RAB23	ENSG00000112210|ENST00000468148|RAB23	MULTI-SECPEP	A375_MHC_IP_R1	1	594.1845092773438	2	593.784961	1185.55537	-0.57189	-0.00033958	0.023184	1.3766E-05	-0.54871	-0.00032581	593.7848186734673	66.503	0.50977	66.503	66.275	66.785	0					15	9	2	0	0	0	0.62001	1	24117	24117		40.239	24.09	1	1775800			8689	3060	6227	6277	8454	8454					-0.029986056930056293
EEFDAITKAY	10	Unmodified	_EEFDAITKAY_					0	0	0		ENSG00000112210|ENST00000468148|RAB23	ENSG00000112210|ENST00000468148|RAB23	ENSG00000112210|ENST00000468148|RAB23	MULTI-MATCH	A375_MHC_IP_R2	2		2	593.784961	1185.55537	-0.77065	-0.0004576	-0.26864	-0.00015951	-1.0393	-0.00061711	593.7848182558679	65.949	0.45839	66.687	66.375	66.833	0.73811	0.092266	-0.0001463	NaN	40.239	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1367000			8690	3060	6227	6277							-0.029986056930056293
EEFDARWVTY	10	Unmodified	_EEFDARWVTY_					0	0	0		ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	MULTI-SECPEP	A375_MHC_IP_R1	1	658.7006225585938	2	658.30131	1314.58807	-0.40055	-0.00026368	-0.45369	-0.00029867	-0.85424	-0.00056235	658.3009336191769	88.357	0.56031	88.357	88.103	88.663	0					21	10	3	0	0	0	0.44315	1	32446	32446		53.317	34.06	1	4056300			8691	8174	6228	6278	8455	8455					-0.05664398570161211
EEFDARWVTY	10	Unmodified	_EEFDARWVTY_					0	0	0		ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	MULTI-MSMS	A375_MHC_IP_R2	2	658.700439453125	2	658.30131	1314.58807	-0.84265	-0.00055472	0.42773	0.00028158	-0.41491	-0.00027314	658.8025657687067	87.841	0.75944	88.573	88.116	88.875	0.7318					25	14	3	0	0	0	0.012014	1	33391	33391		91.085	56.683	1	4423200			8692	8174	6228	6278	8456	8456					-0.05664398570161211
EEFDEKIATKY	11	Unmodified	_EEFDEKIATKY_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-SECPEP	A375_MHC_IP_R1	1	458.9601745605469	3	458.22588	1371.65581	-0.14741	-6.7549E-05	-0.41416	-0.00018978	-0.56157	-0.00025733	458.2255384810413	42.29	0.55606	42.29	42.082	42.638	0					23	10	4	0	0	0	0.96784	1	14662	14662		14.21	12.126	1	3243200			8693	2330	6229	6279	8457	8457					-0.015149934299870438
EEFDEKIATKY	11	Unmodified	_EEFDEKIATKY_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-SECPEP	A375_MHC_IP_R2	2	458.6257019042969	3	458.22588	1371.65581	-0.40154	-0.00018399	-0.17143	-7.8554E-05	-0.57297	-0.00026255	458.2256854933074	41.637	0.40646	42.411	42.149	42.555	0.77451					11	7	2	0	0	0	0.91595	1	15470	15470		22.486	16.252	1	3873100			8694	2330	6229	6279	8458	8458					-0.015149934299870438
EEFDFHVRW	9	Unmodified	_EEFDFHVRW_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-MSMS	A375_MHC_IP_R1	1	422.5964050292969	3	422.196367	1263.56727	0.071725	3.0282E-05	-0.19076	-8.0538E-05	-0.11904	-5.0257E-05	422.19614731628974	88.378	0.66261	88.378	88.052	88.714	0					30	12	4	0	0	0	0.11629	1	32449	32449		37.075	24.9	1	4031000			8695	5030	6230	6280	8459	8459					-0.05396944159156192
EEFDFHVRW	9	Unmodified	_EEFDFHVRW_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-MSMS	A375_MHC_IP_R2	2	422.93109130859375	3	422.196367	1263.56727	-0.040116	-1.6937E-05	0.32872	0.00013879	0.28861	0.00012185	422.19632511108364	87.711	0.65848	88.443	88.116	88.774	0.7318					31	12	3	0	0	0	0.070818	2	33357	33357;33431		43.982	24.356	1	5143600			8696	5030	6230	6280	8460;8461	8460					-0.05396944159156192
EEFDFKEY	8	Unmodified	_EEFDFKEY_					0	0	0		ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4	ENSG00000134744|ENST00000257177|TUT4	ENSG00000134744|ENST00000257177|TUT4	MULTI-MSMS	A375_MHC_IP_R2	2	554.1351318359375	2	553.73748	1105.46041	-0.69952	-0.00038735	-3.5184	-0.0019483	-4.2179	-0.0023356	553.7350862936045	84.157	0.61584	84.896	84.508	85.124	0.73962					19	11	2	0	0	0	0.7256	1	31957	31957		26.884	5.3467	1	2479200			8697	4601	6231	6281	8462	8462					-0.08810539164187503
EEFDGVLREE	10	Unmodified	_EEFDGVLREE_					0	0	0		ENSG00000155530|ENST00000285928|LRGUK;ENST00000473068.1_1_7:133812120-133826373:+|nuORF	ENSG00000155530|ENST00000285928|LRGUK	ENSG00000155530|ENST00000285928|LRGUK	MULTI-MSMS	A375_MHC_IP_R1	1	612.2190551757812	2	611.78295	1221.55135	-0.22242	-0.00013607	-1.5898	-0.00097261	-1.8122	-0.0011087	611.7818879103583	88.6	0.25461	88.6	88.46	88.714	0					6	4	2	0	0	0	0.54492	1	32507	32507		24.991	0.97039	1	2226900			8698	6146	6232	6282	8463	8463					-0.050566951866812815
EEFDGVLREE	10	Unmodified	_EEFDGVLREE_					0	0	0		ENSG00000155530|ENST00000285928|LRGUK;ENST00000473068.1_1_7:133812120-133826373:+|nuORF	ENSG00000155530|ENST00000285928|LRGUK	ENSG00000155530|ENST00000285928|LRGUK	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	611.78295	1221.55135	-0.22242	-0.00013607	-1.5898	-0.00097261	-1.8122	-0.0011087	611.7818879103583	88.6	0.25461	88.6	88.46	88.714	0	-0.022987	-0.00081318	NaN	24.991	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2226900			8699	6146	6232	6282							-0.050566951866812815
EEFDPFFRY	9	Unmodified	_EEFDPFFRY_					0	0	0		ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	MULTI-MSMS	A375_MHC_IP_R1	1	626.1822509765625	2	625.279846	1248.54514	-0.30944	-0.00019349	0.17476	0.00010927	-0.13468	-8.4213E-05	625.2798411784684	107.25	1.2756	107.25	106.78	108.05	0					48	24	4	0	0	0	0.070818	1	39317	39317		56.177	29.909	1	9659300			8700	900	6233	6283	8464	8464					-0.06919168627564432
EEFDPFFRY	9	Unmodified	_EEFDPFFRY_					0	0	0		ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	MULTI-SECPEP	A375_MHC_IP_R2	2	625.679443359375	2	625.279846	1248.54514	-0.84271	-0.00052693	0.29323	0.00018335	-0.54948	-0.00034358	625.2799898740979	106.56	0.71221	107.32	106.99	107.7	0.75977					39	13	4	0	0	0	0.1952	1	40225	40225		75.761	33.805	1	12842000			8701	900	6233	6283	8465	8465					-0.06919168627564432
EEFDRFTGY	9	Unmodified	_EEFDRFTGY_					0	0	0		ENST00000597145.5_1_19:4685559-4714096:-|nuORF;nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9;ENST00000601764.5_1_19:4697564-4723732:-|nuORF	ENST00000597145.5_1_19:4685559-4714096:-|nuORF	ENST00000597145.5_1_19:4685559-4714096:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	582.65380859375	2	582.253828	1162.4931	-0.28482	-0.00016584	0.18244	0.00010623	-0.10237	-5.9608E-05	582.2538975797033	64.738	0.66064	64.738	64.444	65.105	0					26	12	3	0	0	0	0.02331	1	23407	23407		80.676	51.594	1	4507900			8702	5284	6234	6284	8466	8466					-0.0816433204133773
EEFDRFTGY	9	Unmodified	_EEFDRFTGY_					0	0	0		ENST00000597145.5_1_19:4685559-4714096:-|nuORF;nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9;ENST00000601764.5_1_19:4697564-4723732:-|nuORF	ENST00000597145.5_1_19:4685559-4714096:-|nuORF	ENST00000597145.5_1_19:4685559-4714096:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	582.6534423828125	2	582.253828	1162.4931	-0.29629	-0.00017251	-0.067204	-3.913E-05	-0.36349	-0.00021164	582.2537912296905	64.093	0.66136	64.834	64.547	65.208	0.74022					23	12	3	0	0	0	0.0090499	1	24285	24285		100.09	71.009	1	4483800			8703	5284	6234	6284	8467	8467					-0.0816433204133773
EEFDRLVKEY	10	Unmodified	_EEFDRLVKEY_					0	0	0		ENSG00000092036|ENST00000541587|HAUS4;nc|ENSG00000092036|Q9H6D7-4|HAUS4;nc|ENSG00000092036|Q9H6D7-2|HAUS4;nc|ENSG00000092036|Q9H6D7-3|HAUS4	ENSG00000092036|ENST00000541587|HAUS4	ENSG00000092036|ENST00000541587|HAUS4	MULTI-MSMS	A375_MHC_IP_R1	1	443.6224060058594	3	443.22247	1326.64558	-0.12756	-5.6537E-05	0.092128	4.0833E-05	-0.03543	-1.5704E-05	443.2225468528205	58.257	0.50756	58.257	58.075	58.582	0					26	9	4	0	0	0	0.15548	1	20924	20924		53.798	32.927	1	8305300			8704	1991	6235	6285	8468	8468					-0.004675563645832881
EEFDRLVKEY	10	Unmodified	_EEFDRLVKEY_					0	0	0		ENSG00000092036|ENST00000541587|HAUS4;nc|ENSG00000092036|Q9H6D7-4|HAUS4;nc|ENSG00000092036|Q9H6D7-2|HAUS4;nc|ENSG00000092036|Q9H6D7-3|HAUS4	ENSG00000092036|ENST00000541587|HAUS4	ENSG00000092036|ENST00000541587|HAUS4	MULTI-SECPEP	A375_MHC_IP_R2	2	443.9564208984375	3	443.22247	1326.64558	-0.6759	-0.00029957	0.094793	4.2014E-05	-0.5811	-0.00025756	443.2225169395525	57.652	0.75999	58.401	58.019	58.779	0.74894					29	14	4	0	0	0	0.32321	1	21774	21774		64.688	46.348	1	9212100			8705	1991	6235	6285	8469	8469					-0.004675563645832881
EEFDRYSGY	9	Unmodified	_EEFDRYSGY_					0	0	0		nc|ENSG00000074603|Q6V1X1-2|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8;nc|ENSG00000074603|Q6V1X1-4|DPP8;nc|ENSG00000074603|Q6V1X1-5|DPP8;nc|ENSG00000074603|Q6V1X1-6|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	MULTI-MSMS	A375_MHC_IP_R1	1	583.64306640625	2	583.24346	1164.47237	0.30005	0.000175	-0.20123	-0.00011737	0.098821	5.7637E-05	583.2433776936332	44.98	0.50718	44.98	44.777	45.284	0					17	9	3	0	0	0	0.073067	2	15744	15744;15811		55.503	33.966	1	2244800			8706	1586	6236	6286	8470;8471	8470					-0.10328922420990239
EEFDRYSGY	9	Unmodified	_EEFDRYSGY_					0	0	0		nc|ENSG00000074603|Q6V1X1-2|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8;nc|ENSG00000074603|Q6V1X1-4|DPP8;nc|ENSG00000074603|Q6V1X1-5|DPP8;nc|ENSG00000074603|Q6V1X1-6|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	MULTI-MSMS	A375_MHC_IP_R2	2	583.64306640625	2	583.24346	1164.47237	-0.40979	-0.00023901	0.1368	7.9789E-05	-0.27299	-0.00015922	583.2434833680785	44.404	0.45599	45.173	44.934	45.39	0.76909					14	8	2	0	0	0	0.062639	2	16599	16599;16610		59.368	43.219	1	1651200			8707	1586	6236	6286	8472;8473	8472					-0.10328922420990239
EEFDTDEED	9	Unmodified	_EEFDTDEED_					0	0	0			REV__ENST00000550331.1_1_13:52707280-52707970:-|nuORF	REV__ENST00000550331.1_1_13:52707280-52707970:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	564.665771484375	2	564.696206	1127.37786	-0.47693	-0.00026932	-1.4427	-0.00081471	-1.9197	-0.001084	564.6959248424488	87.287	0.56155	87.287	87.134	87.696	0					16	10	2	0	0	0	0.63811	1	32174	32174		12.532	0	1	1345700	+		8708	18915	6237	6287	8474	8474					-0.18073525753652575
EEFEDFSSLPD	11	Unmodified	_EEFEDFSSLPD_					0	0	0		ENSG00000164236|ENST00000296657|ANKRD33B	ENSG00000164236|ENST00000296657|ANKRD33B	ENSG00000164236|ENST00000296657|ANKRD33B	MSMS	A375_MHC_IP_R1	1	657.7243041992188	2	657.772248	1313.52994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.23	1	103.23	102.73	103.73	0								0	0	0	0.14647	1	37924	37924		22.736	7.898	1				8709	6805	6238	6288	8475	8475					-0.11428125006068512
EEFEKALVWY	10	Unmodified	_EEFEKALVWY_					0	0	0		ENSG00000052841|ENST00000039989|TTC17;ENST00000529140.1_1_11:43511716-43515451:+|nuORF	ENSG00000052841|ENST00000039989|TTC17	ENSG00000052841|ENST00000039989|TTC17	MULTI-SECPEP	A375_MHC_IP_R1	1	657.7243041992188	2	657.324254	1312.63395	-0.43166	-0.00028374	0.65364	0.00042965	0.22198	0.00014591	657.3243829451636	103.23	0.61146	103.23	102.91	103.52	0					25	11	3	0	0	0	0.41795	1	37924	37924		65.474	65.474	1	4372800			8710	1242	6239	6289	8476	8476					-0.009857533879085167
EEFEKALVWY	10	Unmodified	_EEFEKALVWY_					0	0	0		ENSG00000052841|ENST00000039989|TTC17;ENST00000529140.1_1_11:43511716-43515451:+|nuORF	ENSG00000052841|ENST00000039989|TTC17	ENSG00000052841|ENST00000039989|TTC17	MULTI-MSMS	A375_MHC_IP_R2	2	658.225830078125	2	657.324254	1312.63395	-0.90964	-0.00059793	0.77283	0.000508	-0.13681	-8.9926E-05	657.3246290000014	102.49	0.66129	103.25	102.97	103.63	0.76428					29	12	3	0	0	0	0.15514	1	38820	38820		53.833	43.759	1	3278400			8711	1242	6239	6289	8477	8477					-0.009857533879085167
EEFELLGKAY	10	Unmodified	_EEFELLGKAY_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	A375_MHC_IP_R1	1	600.2903442382812	2	599.803154	1197.59175	-0.52669	-0.00031591	-0.82657	-0.00049578	-1.3533	-0.00081169	599.803439044028	90.336	1.0123	90.336	89.73	90.742	0					31	19	2	0	0	0	0.014421	1	32996	32996		89.401	68.947	1	1441200			8712	8551	6240	6290	8478	8478					0.0008627120373603248
EEFELLGKAY	10	Unmodified	_EEFELLGKAY_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-SECPEP	A375_MHC_IP_R1	1	599.1952514648438	2	599.803154	1197.59175	-0.27292	-0.0001637	-0.11355	-6.8105E-05	-0.38647	-0.00023181	599.803048867524	88.587	1.8808	88.587	87.949	89.83	0					107	36	5	0	0	0	0.040604	1	32530	32530		189.73	141.98	1	312470000			8713	8551	6240	6290	8479	8479					0.0008627120373603248
EEFELLGKAY	10	Unmodified	_EEFELLGKAY_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-SECPEP	A375_MHC_IP_R2	2	599.195068359375	2	599.803154	1197.59175	-0.44461	-0.00026668	0.13426	8.0528E-05	-0.31035	-0.00018615	599.8032291224448	87.915	2.1221	88.646	88.217	90.339	0.7318					122	41	6	0	0	0	0.028556	1	33547	33547		189.73	135.9	1	303740000			8714	8551	6240	6290	8480	8480					0.0008627120373603248
EEFENDSNDD	10	Unmodified	_EEFENDSNDD_					0	0	0		tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	MSMS	A375_MHC_IP_R1	1	607.192626953125	2	607.210012	1212.40547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.596	1	88.596	88.096	89.096	0								0	0	0	0.14862	1	32528	32528		20.454	15.557	1				8715	29766	6241	6291	8481	8481					-0.19223622493404946
EEFENDSNDD	10	Unmodified	_EEFENDSNDD_					0	0	0		tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	MSMS	A375_MHC_IP_R2	2	607.1923217773438	2	607.210012	1212.40547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.888	1	88.62	88.12	89.12	0.7318								0	0	0	0.14862	1	33437	33437		20.454	15.557	1				8716	29766	6241	6291	8482	8482					-0.19223622493404946
EEFENDSNDD	10	Unmodified	_EEFENDSNDD_					0	0	0		tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	MSMS	A375_MHC_IP_R2	2	607.174560546875	2	607.210012	1212.40547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.77	1	94.514	94.014	95.014	0.74474								0	0	0	0.15435	1	35643	35643		6.7232	3.7279	1				8717	29766	6241	6291	8483	8483					-0.19223622493404946
EEFERTTWHR	10	Unmodified	_EEFERTTWHR_					0	0	0			REV__nc|ENSG00000206562|Q8TCB7-2|METTL6	REV__nc|ENSG00000206562|Q8TCB7-2|METTL6	MULTI-MSMS	A375_MHC_IP_R2	2	464.6209716796875	3	464.221464	1389.64256	-0.38608	-0.00017923	-1.1188	-0.00051938	-1.5049	-0.00069861	464.22092797680307	43.857	0.55415	44.626	44.278	44.833	0.7691					16	10	2	0	0	0	0.70496	1	16376	16376		8.9762	1.9392	1	3294900	+		8718	22599	6242	6292	8484	8484					-0.03667386698748487
EEFERTTWHR	10	Unmodified	_EEFERTTWHR_					0	0	0			REV__nc|ENSG00000206562|Q8TCB7-2|METTL6	REV__nc|ENSG00000206562|Q8TCB7-2|METTL6	MULTI-MATCH	A375_MHC_IP_R1	1		3	464.221464	1389.64256	0.16706	7.7553E-05	-1.2254	-0.00056887	-1.0584	-0.00049131	464.2208267965294	44.497	0.55983	44.497	44.318	44.878	0	-0.064708	-6.2911E-05	NaN	8.9762	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2735500	+		8719	22599	6242	6292							-0.03667386698748487
EEFERTTWHR	10	Unmodified	_EEFERTTWHR_					0	0	0			REV__nc|ENSG00000206562|Q8TCB7-2|METTL6	REV__nc|ENSG00000206562|Q8TCB7-2|METTL6	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	464.221464	1389.64256	-0.38608	-0.00017923	-1.1188	-0.00051938	-1.5049	-0.00069861	464.22092797680307	43.857	0.55415	44.626	44.278	44.833	0.7691	0.064708	8.5549E-05	NaN	8.9762	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3294900	+		8720	22599	6242	6292							-0.03667386698748487
EEFESNSLKY	10	Unmodified	_EEFESNSLKY_					0	0	0		nc|ENSG00000154678|Q14123-2|PDE1C;ENSG00000154678|ENST00000396191|PDE1C	nc|ENSG00000154678|Q14123-2|PDE1C	nc|ENSG00000154678|Q14123-2|PDE1C	MULTI-MSMS	A375_MHC_IP_R1	1	623.6856689453125	2	623.285325	1244.5561	-0.073374	-4.5733E-05	-0.013424	-8.3673E-06	-0.086799	-5.4101E-05	623.2853765028443	48.603	0.45525	48.603	48.375	48.831	0					12	8	2	0	0	0	0.1276	1	17188	17188		57.722	23.32	1	3337400			8721	6100	6243	6293	8485	8485					-0.05639811043943155
EEFETHRTSL	10	Unmodified	_EEFETHRTSL_					0	0	0			REV__ENSG00000079112|ENST00000027335|CDH17	REV__ENSG00000079112|ENST00000027335|CDH17	MSMS	A375_MHC_IP_R2	2	624.6954345703125	2	624.796392	1247.57823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.919	1	88.651	88.151	89.151	0.7318								0	0	0	0.14862	1	33449	33449		20.454	7.4112	1		+		8722	16722	6244	6294	8486	8486					-0.03565586575496127
EEFETIERF	9	Unmodified	_EEFETIERF_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MULTI-MSMS	A375_MHC_IP_R1	1	600.7241821289062	2	600.282586	1198.55062	-0.38417	-0.00023061	-0.0030884	-1.8539E-06	-0.38726	-0.00023246	600.282446365247	73.412	1.0127	73.412	72.88	73.893	0					49	19	4	0	0	0	0.001114	5	26741	26692;26700;26741;26777;26789		152.89	80.964	1	24941000			8723	6048	6245	6295	8487;8488;8489;8490;8491	8489					-0.040714898357464335
EEFETIERF	9	Unmodified	_EEFETIERF_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	599.6644287109375	2	600.282586	1198.55062	-0.38478	-0.00023098	0.26108	0.00015672	-0.1237	-7.4257E-05	600.2826510400627	73.932	0.15194	73.932	73.843	73.995	0					4	2	2	0	0	0	0.54812	1	26940	26940		24.991	10.153	1	552420			8724	6048	6245	6295	8492	8492					-0.040714898357464335
EEFETIERF	9	Unmodified	_EEFETIERF_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MULTI-MSMS	A375_MHC_IP_R2	2	600.7239990234375	2	600.282586	1198.55062	-0.58347	-0.00035025	-0.34269	-0.00020571	-0.92617	-0.00055596	600.282255274984	72.756	0.91602	73.491	73.022	73.938	0.73541					46	17	4	0	0	0	0.31062	1	27504	27504		29.841	9.387	1	22184000			8725	6048	6245	6295	8493	8493					-0.040714898357464335
EEFEYQRSY	9	Unmodified	_EEFEYQRSY_					0	0	0		ENSG00000035499|ENST00000265036|DEPDC1B	ENSG00000035499|ENST00000265036|DEPDC1B	ENSG00000035499|ENST00000265036|DEPDC1B	MULTI-SECPEP	A375_MHC_IP_R1	1	626.1702880859375	2	625.769842	1249.52513	-0.82145	-0.00051404	0.40938	0.00025618	-0.41207	-0.00025786	625.7700494112455	41.692	0.51234	41.692	41.419	41.932	0					21	9	3	0	0	0	0.025037	1	14424	14424		110.55	83.669	1	3929000			8726	1131	6246	6296	8494	8494					-0.08964964358187899
EEFEYQRSY	9	Unmodified	_EEFEYQRSY_					0	0	0		ENSG00000035499|ENST00000265036|DEPDC1B	ENSG00000035499|ENST00000265036|DEPDC1B	ENSG00000035499|ENST00000265036|DEPDC1B	MULTI-SECPEP	A375_MHC_IP_R2	2	626.16943359375	2	625.769842	1249.52513	-1.0555	-0.00066049	0.040402	2.5282E-05	-1.0151	-0.00063521	625.7698572742021	41.091	0.55891	41.865	41.59	42.149	0.77451					21	10	3	0	0	0	0.13208	1	15237	15237		66.457	37.97	1	3778200			8727	1131	6246	6296	8495	8495					-0.08964964358187899
EEFEYTGQII	10	Unmodified	_EEFEYTGQII_					0	0	0		ENSG00000162753|ENST00000367714|SLC9C2	ENSG00000162753|ENST00000367714|SLC9C2	ENSG00000162753|ENST00000367714|SLC9C2	MSMS	A375_MHC_IP_R2	2	614.7213134765625	2	614.790244	1227.56593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.937	1	88.669	88.169	89.169	0.7318								0	0	0	0.038144	1	33456	33456		53.833	0	1				8728	6589	6247	6297	8496	8496					-0.038746230385640956
EEFFDETRRL	10	Unmodified	_EEFFDETRRL_					0	0	0		ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	MULTI-SECPEP	A375_MHC_IP_R1	1	448.2861022949219	3	447.88597	1340.63608	-0.12964	-5.8066E-05	-0.3283	-0.00014704	-0.45795	-0.00020511	447.88590885275624	59.125	0.51004	59.125	58.887	59.397	0					22	9	3	0	0	0	0.79938	1	21286	21286		29.281	23.878	1	2056400			8729	3743	6248	6298	8497	8497					-0.02061324650117058
EEFFDETRRL	10	Unmodified	_EEFFDETRRL_					0	0	0		ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	MULTI-SECPEP	A375_MHC_IP_R2	2	448.2856750488281	3	447.88597	1340.63608	-0.64408	-0.00028848	-0.20621	-9.2357E-05	-0.85029	-0.00038083	447.88584898417326	58.438	0.50945	59.187	58.879	59.389	0.74894					20	9	3	0	0	0	0.79938	1	22134	22134		23.964	21.529	1	2155500			8730	3743	6248	6298	8498	8498					-0.02061324650117058
EEFFSSSSV	9	Unmodified	_EEFFSSSSV_					0	0	0			REV__ENST00000369751.2_1_6:82901346-82950269:-|nuORF	REV__ENST00000369751.2_1_6:82901346-82950269:-|nuORF	MSMS	A375_MHC_IP_R1	1	509.645263671875	2	509.72183	1017.42911	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.891	1	87.891	87.391	88.391	0								0	0	0	0.1499	1	32258	32258		21.747	7.165	1		+		8731	24014	6249	6299	8499	8499					-0.07891112198262817
EEFGIIKSY	9	Unmodified	_EEFGIIKSY_					0	0	0		ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	MULTI-MSMS	A375_MHC_IP_R2	2	543.70068359375	2	543.279315	1084.54408	-1.0289	-0.00055899	0.00067032	3.6417E-07	-1.0283	-0.00055863	543.2791940076677	71.267	0.35532	72.001	71.756	72.111	0.73421					9	6	2	0	0	0	0.26169	1	27011	27011		33.445	6.5612	1	2438000			8732	6943	6250	6300	8500	8500					0.005186170035358373
EEFGIKYIL	9	Unmodified	_EEFGIKYIL_					0	0	0		ENSG00000139318|ENST00000279488|DUSP6;DUSP6|p.S328Ifs*6|1|0.61|ENSG00000139318|chr12:89349418-89349419|-/T|frameshift_variant	ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	MULTI-SECPEP	A375_MHC_IP_R1	1	556.9918212890625	2	556.305332	1110.59611	-0.32157	-0.00017889	-0.22249	-0.00012377	-0.54406	-0.00030267	556.8066654108688	107.24	0.46021	107.24	106.98	107.44	0					13	8	2	0	0	0	0.35487	1	39394	39394		36.127	15.673	1	1260700			8733	5068	6251	6301	8501	8501					0.0452378041729844
EEFGKKYKL	9	Unmodified	_EEFGKKYKL_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-SECPEP	A375_MHC_IP_R1	1	381.9476623535156	3	381.213246	1140.61791	0.025213	9.6117E-06	-0.066579	-2.5381E-05	-0.041365	-1.5769E-05	381.21314877686876	26.122	0.4562	26.122	25.917	26.373	0					15	8	2	0	0	0	0.053904	1	7738	7738		59.368	25.923	1	15418000			8734	7525	6252	6302	8502	8502					0.053225851658453394
EEFGKKYKL	9	Unmodified	_EEFGKKYKL_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-SECPEP	A375_MHC_IP_R2	2	381.9476623535156	3	381.213246	1140.61791	-0.47574	-0.00018136	0.41493	0.00015818	-0.060808	-2.3181E-05	381.2133510780412	25.478	0.55999	26.122	25.822	26.382	0.64368					19	10	2	0	0	0	0.16676	1	8524	8524		38.615	17.025	1	17571000			8735	7525	6252	6302	8503	8503					0.053225851658453394
EEFGNQLP	8	Unmodified	_EEFGNQLP_					0	0	0			REV__ENSG00000102738|ENST00000323563|MRPS31	REV__ENSG00000102738|ENST00000323563|MRPS31	MULTI-MSMS	A375_MHC_IP_R1	1	468.1404724121094	2	467.219257	932.423961	-0.39048	-0.00018244	0.20306	9.4873E-05	-0.18742	-8.7568E-05	467.2191700499879	33.101	0.45544	33.101	32.887	33.342	0					17	8	3	0	0	0	0.75322	1	10783	10783		19.439	0	1	4949500	+		8736	17228	6253	6303	8504	8504					-0.04495371270229498
EEFGQAFSF	9	Unmodified	_EEFGQAFSF_					0	0	0		ENST00000479107.1_1_6:33037343-33041347:-|nuORF;ENSG00000231389|ENST00000419277|HLA-DPA1	ENST00000479107.1_1_6:33037343-33041347:-|nuORF	ENST00000479107.1_1_6:33037343-33041347:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	531.631591796875	2	531.232364	1060.45018	-0.33664	-0.00017883	-0.34832	-0.00018504	-0.68496	-0.00036387	531.2320872505782	116.92	0.66034	116.92	116.55	117.21	0					27	12	3	0	0	0	0.0097266	1	42848	42848		111.29	33.138	1	10539000			8737	9722	6254	6304	8505	8505					-0.0776310209876101
EEFGQAFSF	9	Unmodified	_EEFGQAFSF_					0	0	0		ENST00000479107.1_1_6:33037343-33041347:-|nuORF;ENSG00000231389|ENST00000419277|HLA-DPA1	ENST00000479107.1_1_6:33037343-33041347:-|nuORF	ENST00000479107.1_1_6:33037343-33041347:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	531.6320190429688	2	531.232364	1060.45018	-0.47678	-0.00025328	-0.94167	-0.00050025	-1.4185	-0.00075353	531.2318096624001	116.17	0.61292	116.83	116.46	117.07	0.65962					22	11	3	0	0	0	0.0097266	1	43849	43849		111.29	33.138	1	16157000			8738	9722	6254	6304	8506	8506					-0.0776310209876101
EEFGRFASF	9	Unmodified	_EEFGRFASF_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-MSMS	A375_MHC_IP_R1	1	545.7022094726562	2	545.253631	1088.49271	-0.55424	-0.0003022	0.1687	9.1984E-05	-0.38554	-0.00021022	545.2535926796098	81.404	1.1134	81.404	81.1	82.214	0					47	21	4	0	0	0	0.0092511	2	29740	29719;29740		103.42	103.42	1	12548000			8739	9423	6255	6305	8507;8508	8508					-0.047997069705161266
EEFGRFASF	9	Unmodified	_EEFGRFASF_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	545.253631	1088.49271	-0.86299	-0.00047055	0.11374	6.2015E-05	-0.74925	-0.00040853	545.2536351684455	80.697	1.1191	81.442	81.011	82.13	0.74474	0.019306	-3.7253E-05	NaN	103.42	41	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12409000			8740	9423	6255	6305							-0.047997069705161266
EEFGRVKGHF	10	Unmodified	_EEFGRVKGHF_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32689659-32696621:+|nuORF	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-SECPEP	A375_MHC_IP_R1	1	402.9402160644531	3	402.540245	1204.59891	-0.58523	-0.00023558	0.030773	1.2387E-05	-0.55446	-0.00022319	402.54043032182466	27.019	0.55286	27.019	26.677	27.229	0					19	10	3	0	0	0	0.87163	1	8160	8160		8.4443	3.7284	1	5199000			8741	1797	6256	6306	8509	8509					0.0047904859479785955
EEFGRVKGHF	10	Unmodified	_EEFGRVKGHF_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32689659-32696621:+|nuORF	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-SECPEP	A375_MHC_IP_R2	2	402.9400939941406	3	402.540245	1204.59891	-0.39076	-0.0001573	0.27015	0.00010874	-0.12062	-4.8552E-05	402.5403563840123	26.373	0.50782	27.033	26.805	27.313	0.65992					13	9	2	0	0	0	0.78945	1	8926	8926		21.59	21.59	1	4754300			8742	1797	6256	6306	8510	8510					0.0047904859479785955
EEFHIYTQY	9	Unmodified	_EEFHIYTQY_					0	0	0		ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-MSMS	A375_MHC_IP_R1	1	616.1792602539062	2	615.277303	1228.54005	0.11076	6.8146E-05	-0.15881	-9.7712E-05	-0.048053	-2.9566E-05	615.2770959911821	69.707	0.7585	69.707	69.326	70.085	0					31	14	4	0	0	0	0.0093345	1	25298	25298		104.8	70.397	1	5550600			8743	3656	6257	6307	8511	8511					-0.06507472490170585
EEFHIYTQY	9	Unmodified	_EEFHIYTQY_					0	0	0		ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-SECPEP	A375_MHC_IP_R1	1	614.7227172851562	2	615.277303	1228.54005	-0.25266	-0.00015546	-2.1848	-0.0013443	-2.4375	-0.0014997	615.2769603598393	88.429	0.60985	88.429	88.154	88.764	0					14	11	2	0	0	0	0.65246	1	32577	32577		21.747	10.923	1	1144800			8744	3656	6257	6307	8512	8512					-0.06507472490170585
EEFHIYTQY	9	Unmodified	_EEFHIYTQY_					0	0	0		ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-MSMS	A375_MHC_IP_R2	2	615.6763305664062	2	615.277303	1228.54005	-0.50493	-0.00031067	-0.35537	-0.00021865	-0.8603	-0.00052932	615.2770253115813	69.183	0.45625	69.918	69.677	70.133	0.73511					15	8	2	0	0	0	0.0095277	1	26183	26183		108	69.821	1	3662600			8745	3656	6257	6307	8513	8513					-0.06507472490170585
EEFHTCMWD	9	Unmodified	_EEFHTCMWD_					0	0	0			REV__ENST00000547653.1_2_12:58162781-58163352:-|nuORF	REV__ENST00000547653.1_2_12:58162781-58163352:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	599.468505859375	2	599.220617	1196.42668	-0.46082	-0.00027613	-0.38594	-0.00023126	-0.84676	-0.00050739	599.7208427980528	88.542	0.2534	89.274	89.077	89.331	0.7318					6	4	2	0	0	0	0.75466	1	33673	33673		12.532	1.7076	1	643280	+		8746	16326	6258	6308	8514	8514					-0.16367607199254053
EEFIELLN	8	Unmodified	_EEFIELLN_					0	0	0			REV__tr|U7STC9|U7STC9_FUSNUPhosphoribosylglycinamideformyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purNPE=3SV=1	REV__tr|U7STC9|U7STC9_FUSNUPhosphoribosylglycinamideformyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purNPE=3SV=1	MSMS	A375_MHC_IP_R2	2	503.6840515136719	2	503.758215	1005.50188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.308	1	85.047	84.547	85.547	0.7396								0	0	0	0.16876	1	32048	32048		26.341	1.6674	1		+		8747	28475	6259	6309	8515	8515					-0.000653584048563971
EEFIFGTGRVA	11	Unmodified	_EEFIFGTGRVA_					0	0	0		ENST00000566802.5_1_16:74382766-74386124:-|nuORF;ENST00000561920.5_1_16:70162832-70170105:+|nuORF;ENST00000429810.2_1_16:74382766-74394769:-|nuORF	ENST00000566802.5_1_16:74382766-74386124:-|nuORF	ENST00000566802.5_1_16:74382766-74386124:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	613.7134399414062	2	613.31422	1224.61389	-0.12898	-7.9105E-05	-0.64538	-0.00039582	-0.77436	-0.00047493	613.3136493760845	71.569	0.55275	71.569	71.415	71.968	0					15	10	2	0	0	0	0.36212	1	26031	26031		41.956	16.556	1	2898400			8748	11847	6260	6310	8516	8516					0.010564956721509589
EEFIFGTGRVA	11	Unmodified	_EEFIFGTGRVA_					0	0	0		ENST00000566802.5_1_16:74382766-74386124:-|nuORF;ENST00000561920.5_1_16:70162832-70170105:+|nuORF;ENST00000429810.2_1_16:74382766-74394769:-|nuORF	ENST00000566802.5_1_16:74382766-74386124:-|nuORF	ENST00000566802.5_1_16:74382766-74386124:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	613.7136840820312	2	613.31422	1224.61389	-0.67937	-0.00041667	-0.2881	-0.0001767	-0.96747	-0.00059336	613.3139231930913	71.012	0.45642	71.746	71.503	71.959	0.73421					14	8	2	0	0	0	0.36212	1	26944	26944		41.956	5.8285	1	4259000			8749	11847	6260	6310	8517	8517					0.010564956721509589
EEFIGKIGI	9	Unmodified	_EEFIGKIGI_					0	0	0		ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	MULTI-SECPEP	A375_MHC_IP_R1	1	503.6841125488281	2	503.2844	1004.55425	-0.57839	-0.00029109	-0.0003699	-1.8617E-07	-0.57876	-0.00029128	503.2843637393923	85.235	0.81429	85.235	84.852	85.667	0					26	15	2	0	0	0	0.38578	1	31236	31236		41.84	9.5341	1	13276000			8750	5279	6261	6311	8518	8518					0.052152247287722275
EEFILKQF	8	Unmodified	_EEFILKQF_					0	0	0		nc|ENSG00000189157|Q6ZV65-2|FAM47E;nc|ENSG00000189157|Q6ZV65-1|FAM47E;ENSG00000189157|ENST00000424749|FAM47E;ENST00000509377.1_3_4:77172961-77230323:+|nuORF	nc|ENSG00000189157|Q6ZV65-2|FAM47E	nc|ENSG00000189157|Q6ZV65-2|FAM47E	MULTI-SECPEP	A375_MHC_IP_R2	2	527.1856079101562	2	527.2844	1052.55425	-0.38318	-0.00020204	-2.0252	-0.0010679	-2.4084	-0.0012699	527.2830243946662	91.552	1.0121	92.287	92.021	93.033	0.7345					24	19	2	0	0	0	0.92636	1	34769	34769		16.942	9.6531	1	1568700			8751	8965	6262	6312	8519	8519					0.030072247287762366
EEFITSEVVQF	11	Unmodified	_EEFITSEVVQF_					0	0	0		ENST00000357578.7_2_6:24495232-24502797:+|nuORF	ENST00000357578.7_2_6:24495232-24502797:+|nuORF	ENST00000357578.7_2_6:24495232-24502797:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	442.9496154785156	3	443.218726	1326.63435	-0.3512	-0.00015566	-0.71785	-0.00031816	-1.0691	-0.00047382	443.21838648942827	23.457	0.20378	23.457	23.33	23.533	0					5	3	2	0	0	0	0.99227	1	6453	6453		4.7159	0	1	5616300			8752	10986	6263	6313	8520	8520					-0.01590378458718078
EEFKDFNKY	9	Unmodified	_EEFKDFNKY_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;nc|ENSG00000127663|O94953-2|KDM4B	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-SECPEP	A375_MHC_IP_R1	1	407.5925598144531	3	407.192511	1218.5557	-0.29071	-0.00011838	0.53427	0.00021755	0.24356	9.9177E-05	407.1927307932495	38.552	0.46121	38.552	38.319	38.78	0					14	8	2	0	0	0	0.36673	1	13100	13100		45.74	33.565	1	8222600			8753	4101	6264	6314	8521	8521					-0.0448318597314028
EEFKDFNKY	9	Unmodified	_EEFKDFNKY_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;nc|ENSG00000127663|O94953-2|KDM4B	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-MSMS	A375_MHC_IP_R2	2	407.1529846191406	3	407.192511	1218.5557	-0.15604	-6.3538E-05	0.050244	2.0459E-05	-0.1058	-4.3079E-05	407.19248014237854	37.81	0.4614	38.585	38.382	38.843	0.77451					15	8	2	0	0	0	0.44024	1	13855	13855		16.566	12.449	1	4421400			8754	4101	6264	6314	8522	8522					-0.0448318597314028
EEFKIGPYK	9	Unmodified	_EEFKIGPYK_					0	0	0			REV__ENST00000397072.7_1_5:179665329-179706839:-|nuORF	REV__ENST00000397072.7_1_5:179665329-179706839:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	556.1947021484375	2	555.795132	1109.57571	-0.70623	-0.00039252	-0.034589	-1.9225E-05	-0.74082	-0.00041175	555.7947615724523	88.091	0.81043	88.823	88.418	89.228	0.7318					21	11	4	0	0	0	0.55359	1	33514	33514		28.487	0	1	2746700	+		8755	16389	6265	6315	8523	8523					0.025306097574684827
EEFKKLLY	8	Unmodified	_EEFKKLLY_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7;nc|ENSG00000118997|Q8WXX0-2|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	A375_MHC_IP_R1	1	535.69970703125	2	535.30005	1068.58555	-0.72213	-0.00038656	0.4176	0.00022354	-0.30454	-0.00016302	535.3002757191505	83.453	0.61118	83.453	83.175	83.786	0					23	11	3	0	0	0	0.90775	1	30564	30564		26.884	7.6267	1	2767600			8756	3568	6266	6316	8524	8524					0.053997977628796434
EEFKSFAL	8	Unmodified	_EEFKSFAL_					0	0	0		ENSG00000087253|ENST00000262134|LPCAT2;ENST00000562299.1_1_16:55612978-55617007:+|nuORF;nc|ENSG00000087253|Q7L5N7-2|LPCAT2	ENSG00000087253|ENST00000262134|LPCAT2	ENSG00000087253|ENST00000262134|LPCAT2	MULTI-MSMS	A375_MHC_IP_R1	1	485.7021789550781	2	485.74765	969.480748	-0.282	-0.00013698	-0.056202	-2.73E-05	-0.3382	-0.00016428	485.7475945777644	75.895	0.55465	75.895	75.614	76.168	0					32	10	4	0	0	0	0.73946	1	27750	27750		23.148	8.5667	1	11237000			8757	1865	6267	6317	8525	8525					-0.00521323713712718
EEFKSFAL	8	Unmodified	_EEFKSFAL_					0	0	0		ENSG00000087253|ENST00000262134|LPCAT2;ENST00000562299.1_1_16:55612978-55617007:+|nuORF;nc|ENSG00000087253|Q7L5N7-2|LPCAT2	ENSG00000087253|ENST00000262134|LPCAT2	ENSG00000087253|ENST00000262134|LPCAT2	MULTI-MSMS	A375_MHC_IP_R2	2	485.7019348144531	2	485.74765	969.480748	-0.64824	-0.00031488	0.0020658	1.0035E-06	-0.64618	-0.00031388	485.74761765352235	75.136	0.55631	75.874	75.57	76.126	0.73751					31	10	4	0	0	0	0.16945	1	28539	28539		71.922	35.878	1	10675000			8758	1865	6267	6317	8526	8526					-0.00521323713712718
EEFLAQHGSEY	11	Unmodified	_EEFLAQHGSEY_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-SECPEP	A375_MHC_IP_R2	2	654.7138671875	2	655.288399	1308.56225	-0.73137	-0.00047926	-0.62343	-0.00040853	-1.3548	-0.00088778	655.28779797367	47.825	0.35509	48.586	48.378	48.733	0.76128					10	6	2	0	0	0	0.39105	1	17930	17930		40.725	31.979	1	982460			8759	1777	6268	6318	8527	8527					-0.0796929281239045
EEFLEEKLAPP	11	Unmodified	_EEFLEEKLAPP_					0	0	0		ENSG00000159212|ENST00000349499|CLIC6;nc|ENSG00000159212|Q96NY7|CLIC6	ENSG00000159212|ENST00000349499|CLIC6	ENSG00000159212|ENST00000349499|CLIC6	MULTI-MSMS	A375_MHC_IP_R2	2	434.958740234375	3	434.558971	1300.65508	-0.39306	-0.00017081	-0.23497	-0.00010211	-0.62803	-0.00027291	434.8930673696475	62.367	0.50974	63.109	62.824	63.333	0.74263					26	9	4	0	0	0	0.70017	1	23631	23631		15.538	5.2232	1	4385100			8760	6358	6269	6319	8528	8528					0.016782119209665325
EEFLEGFLSE	10	Unmodified	_EEFLEGFLSE_					0	0	0		ENSG00000106624|ENST00000223357|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	MSMS	A375_MHC_IP_R1	1	600.2028198242188	2	600.276969	1198.53938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.519	1	89.519	89.019	90.019	0								0	0	0	0.14862	1	32884	32884		20.454	3.5113	1				8761	2703	6270	6320	8529	8529					-0.05194311929903961
EEFLEPPSPAP	11	Unmodified	_EEFLEPPSPAP_					0	0	0		ENST00000281708.8_1_4:153456308-153456887:-|nuORF	ENST00000281708.8_1_4:153456308-153456887:-|nuORF	ENST00000281708.8_1_4:153456308-153456887:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	607.192626953125	2	606.792786	1211.57102	-0.21391	-0.0001298	0.15137	9.1849E-05	-0.062543	-3.7951E-05	606.7926632083166	88.587	0.61116	88.587	88.358	88.97	0					31	11	3	0	0	0	0.90584	1	32528	32528		22.736	17.004	1	8662200			8762	10430	6271	6321	8530	8530					-0.026303191759325273
EEFLEPPSPAP	11	Unmodified	_EEFLEPPSPAP_					0	0	0		ENST00000281708.8_1_4:153456308-153456887:-|nuORF	ENST00000281708.8_1_4:153456308-153456887:-|nuORF	ENST00000281708.8_1_4:153456308-153456887:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	607.1923217773438	2	606.792786	1211.57102	-0.33117	-0.00020095	0.49922	0.00030292	0.16805	0.00010197	606.7925729325391	87.914	0.71024	88.646	88.418	89.128	0.7318					27	13	3	0	0	0	0.75408	1	33437	33437		34.402	11.665	1	7609000			8763	10430	6271	6321	8531	8531					-0.026303191759325273
EEFLGDYRW	9	Unmodified	_EEFLGDYRW_					0	0	0		ENSG00000117906|ENST00000394885|RCN2;ENST00000560833.1_1_15:77236155-77240950:+|nuORF;nc|ENSG00000117906|Q14257-2|RCN2	ENSG00000117906|ENST00000394885|RCN2;nc|ENSG00000117906|Q14257-2|RCN2	ENSG00000117906|ENST00000394885|RCN2	MULTI-MSMS	A375_MHC_IP_R2	2	608.6822509765625	2	607.77747	1213.54039	-0.29036	-0.00017647	1.6218	0.00098571	1.3315	0.00080924	607.7774208151174	93.55	1.8236	94.295	93.146	94.969	0.74473					72	35	4	0	0	0	0.39434	1	35492	35492		24.991	11.085	1	10404000			8764	3518;14561	6272	6322	8532	8532					-0.05784052770331982
EEFLGGKKTNW	11	Unmodified	_EEFLGGKKTNW_					0	0	0		ENST00000396667.7_2_7:12254545-12258110:+|nuORF	ENST00000396667.7_2_7:12254545-12258110:+|nuORF	ENST00000396667.7_2_7:12254545-12258110:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	437.29058837890625	3	436.890944	1307.651	-0.10987	-4.8003E-05	-0.17195	-7.5124E-05	-0.28182	-0.00012313	436.8907874703643	44.087	0.40809	44.087	43.859	44.267	0					11	7	2	0	0	0	0.82239	1	15358	15358		29.291	16.435	1	2582000			8765	11494	6273	6323	8533	8533					0.00948167217916307
EEFLGGKKTNW	11	Unmodified	_EEFLGGKKTNW_					0	0	0		ENST00000396667.7_2_7:12254545-12258110:+|nuORF	ENST00000396667.7_2_7:12254545-12258110:+|nuORF	ENST00000396667.7_2_7:12254545-12258110:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	437.2906799316406	3	436.890944	1307.651	-0.16626	-7.2637E-05	0.026643	1.164E-05	-0.13962	-6.0997E-05	436.8910949137521	43.256	0.75966	44.029	43.573	44.333	0.7724					23	14	4	0	0	0	0.57984	1	16133	16133		16.137	3.9096	1	3158800			8766	11494	6273	6323	8534	8534					0.00948167217916307
EEFLIAGKL	9	Unmodified	_EEFLIAGKL_					0	0	0		ENSG00000102265|ENST00000218388|TIMP1	ENSG00000102265|ENST00000218388|TIMP1	ENSG00000102265|ENST00000218388|TIMP1	MULTI-MSMS	A375_MHC_IP_R2	2	510.6918029785156	2	510.292225	1018.5699	-0.6328	-0.00032291	0.33847	0.00017272	-0.29432	-0.00015019	510.29245400220816	87.104	0.50783	87.837	87.458	87.966	0.733					18	9	3	0	0	0	0.06083	1	33161	33161		60.074	22.1	1	2065900			8767	2368	6274	6324	8535	8535					0.061355112458159056
EEFLNGRAVY	10	Unmodified	_EEFLNGRAVY_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-MSMS	A375_MHC_IP_R1	1	599.697998046875	2	599.29857	1196.58259	-0.46483	-0.00027857	0.32692	0.00019592	-0.13791	-8.2647E-05	599.2987693483411	58.707	0.45658	58.707	58.43	58.887	0					26	8	4	0	0	0	0.0042118	1	21082	21082		136.39	100.27	1	7317300			8768	2398	6275	6325	8536	8536					-0.007840773619591346
EEFLNGRAVY	10	Unmodified	_EEFLNGRAVY_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-MSMS	A375_MHC_IP_R2	2	599.6979370117188	2	599.29857	1196.58259	-0.79043	-0.0004737	-0.41786	-0.00025042	-1.2083	-0.00072412	599.2985347598376	58.004	0.55448	58.753	58.477	59.032	0.74894					28	10	4	0	0	0	0.0018419	1	21922	21922		140.63	104.51	1	7553400			8769	2398	6275	6325	8537	8537					-0.007840773619591346
EEFLPRGDRY	10	Unmodified	_EEFLPRGDRY_					0	0	0		ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	MULTI-MSMS	A375_MHC_IP_R1	1	428.2786865234375	3	427.878926	1280.61495	-0.52816	-0.00022599	0.082445	3.5276E-05	-0.44571	-0.00019071	427.8789450146843	41.445	0.4078	41.445	41.266	41.674	0					24	7	4	0	0	0	0.11994	1	14296	14296		44.945	17.816	1	11363000			8770	1123	6276	6326	8538	8538					-0.014132899589412773
EEFLPRGDRY	10	Unmodified	_EEFLPRGDRY_					0	0	0		ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	MULTI-SECPEP	A375_MHC_IP_R1	1	641.7142333984375	2	641.314751	1280.61495	-0.98246	-0.00063007	-0.35729	-0.00022914	-1.3398	-0.0008592	641.3144805926299	41.445	0.30512	41.445	41.266	41.571	0					9	5	2	0	0	0	0.73795	1	14338	14338		32.037	15.888	1	3615200			8771	1123	6276	6326	8539	8539					-0.014132899589412773
EEFLPRGDRY	10	Unmodified	_EEFLPRGDRY_					0	0	0		ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	MULTI-MSMS	A375_MHC_IP_R2	2	428.27886962890625	3	427.878926	1280.61495	-0.37226	-0.00015928	0.12412	5.3109E-05	-0.24814	-0.00010617	427.87892735045375	40.742	0.56005	41.517	41.285	41.845	0.77451					28	10	4	0	0	0	0.35113	1	15096	15096		27.129	12.958	1	12067000			8772	1123	6276	6326	8540	8540					-0.014132899589412773
EEFLQQYNHY	10	Unmodified	_EEFLQQYNHY_					0	0	0		ENSG00000198301|ENST00000356260|SDAD1	ENSG00000198301|ENST00000356260|SDAD1	ENSG00000198301|ENST00000356260|SDAD1	MULTI-SECPEP	A375_MHC_IP_R1	1	686.2031860351562	2	685.804217	1369.59388	-0.61447	-0.00042141	-0.88965	-0.00061012	-1.5041	-0.0010315	685.8041051427141	63.863	0.66138	63.863	63.58	64.242	0					32	12	4	0	0	0	0.034723	1	23076	23076		144.35	113.08	1	5394200			8773	9253	6277	6327	8541	8541					-0.07613300058460482
EEFLQRAK	8	Unmodified	_EEFLQRAK_					0	0	0		PRUNE2|p.I2429Mfs*8|1|0.09|ENSG00000106772|chr9:76704987-76704988|-/C|frameshift_variant;nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2;ENST00000492157.5_1_9:79438526-79520879:-|nuORF	PRUNE2|p.I2429Mfs*8|1|0.09|ENSG00000106772|chr9:76704987-76704988|-/C|frameshift_variant	PRUNE2|p.I2429Mfs*8|1|0.09|ENSG00000106772|chr9:76704987-76704988|-/C|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	510.9738464355469	2	510.777274	1019.53999	-0.51229	-0.00026167	-1.3294	-0.000679	-1.8416	-0.00094067	510.7769529056216	28.284	0.50406	28.284	28.088	28.592	0					12	9	2	0	0	0	0.95423	1	8773	8773		1.8442	0	1	2082100			8774	2711	6278	6328	8542	8542					0.031005723004795982
EEFLSKDISY	10	Unmodified	_EEFLSKDISY_					0	0	0		ENSG00000006634|ENST00000265728|DBF4;ENST00000486925.1_1_7:87505915-87514494:+|nuORF;nc|ENSG00000006634|Q9UBU7-2|DBF4	ENSG00000006634|ENST00000265728|DBF4	ENSG00000006634|ENST00000265728|DBF4	MULTI-SECPEP	A375_MHC_IP_R1	1	616.1981201171875	2	615.798069	1229.58158	0.010008	6.1628E-06	-0.013855	-8.5319E-06	-0.0038472	-2.3691E-06	615.7979072529416	69.914	0.504	69.914	69.681	70.185	0					24	9	4	0	0	0	0.08679	1	25365	25365		96.936	67.854	1	4039400			8775	922	6279	6329	8543	8543					-0.02402336521504367
EEFLSKDISY	10	Unmodified	_EEFLSKDISY_					0	0	0		ENSG00000006634|ENST00000265728|DBF4;ENST00000486925.1_1_7:87505915-87514494:+|nuORF;nc|ENSG00000006634|Q9UBU7-2|DBF4	ENSG00000006634|ENST00000265728|DBF4	ENSG00000006634|ENST00000265728|DBF4	MULTI-MSMS	A375_MHC_IP_R2	2	616.197021484375	2	615.798069	1229.58158	-0.5255	-0.0003236	-0.3448	-0.00021233	-0.87031	-0.00053593	615.797728412349	69.354	0.50561	70.088	69.829	70.335	0.73421					23	9	4	0	0	0	0.011232	1	26271	26271		125.04	95.956	1	4710100			8776	922	6279	6329	8544	8544					-0.02402336521504367
EEFLSKVSI	9	Unmodified	_EEFLSKVSI_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-SECPEP	A375_MHC_IP_R2	2	526.6864013671875	2	526.28714	1050.55973	-0.41885	-0.00022043	-0.39479	-0.00020777	-0.81364	-0.00042821	526.2867787587109	78.393	1.0678	79.137	78.728	79.796	0.74474					35	20	3	0	0	0	0.074405	1	29722	29722		79.596	35.738	1	8012800			8777	2847;8891	6280	6330	8545	8545					0.036469035205982436
EEFNELLSKY	10	Unmodified	_EEFNELLSKY_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-SECPEP	A375_MHC_IP_R1	1	636.7108764648438	2	636.311343	1270.60813	-0.87792	-0.00055863	0.85144	0.00054178	-0.026486	-1.6853E-05	636.3118877816369	86.459	0.55733	86.459	86.224	86.781	0					16	10	2	0	0	0	0.7212	1	31722	31722		34.222	28.925	1	2395900			8778	1764	6281	6331	8546	8546					-0.016346476301805524
EEFNELLSKY	10	Unmodified	_EEFNELLSKY_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	A375_MHC_IP_R2	2	636.7108154296875	2	636.311343	1270.60813	-0.60742	-0.00038651	-0.78539	-0.00049976	-1.3928	-0.00088627	636.3113015781399	85.853	0.50784	86.588	86.288	86.796	0.73485					20	9	3	0	0	0	0.51635	1	32689	32689		37.075	24.032	1	2061100			8779	1764	6281	6331	8547	8547					-0.016346476301805524
EEFNKQWERER	11	Unmodified	_EEFNKQWERER_					0	0	0			REV__ENST00000554535.2_1_14:35899543-35899834:+|nuORF	REV__ENST00000554535.2_1_14:35899543-35899834:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	776.7727661132812	2	775.870953	1549.72735	-0.41295	-0.0003204	-1.1585	-0.00089888	-1.5715	-0.0012193	775.8699778518788	102.2	0.60732	102.2	101.9	102.51	0					23	11	3	0	0	0	0.73378	1	37541	37541		5.2969	0.39987	1	3877300	+		8780	18390	6282	6332	8548	8548					-0.025520609527802662
EEFNQPLSV	9	Unmodified	_EEFNQPLSV_					0	0	0		nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL	nc|ENSG00000123473|Q15468|STIL	nc|ENSG00000123473|Q15468|STIL	MULTI-SECPEP	A375_MHC_IP_R2	2	532.158203125	2	531.758746	1061.50294	-0.58302	-0.00031002	-0.03705	-1.9702E-05	-0.62007	-0.00032973	531.7590443853633	78.937	0.55888	79.682	79.438	79.997	0.74474					16	10	2	0	0	0	0.60917	1	30004	30004		19.257	3.4098	1	2036200			8781	3850	6283	6333	8549	8549					-0.02535144035960002
EEFNREMFW	9	Oxidation (M)	_EEFNREM(Oxidation (M))FW_		EEFNREM(1)FW		EEFNREM(70)FW	0	0	1		ENST00000566833.1_1_15:43477651-43481519:+|nuORF;nc|ENSG00000166946|O95273-2|CCNDBP1;ENSG00000166946|ENST00000300213|CCNDBP1;ENST00000564630.5_1_15:43477651-43478217:+|nuORF	ENST00000566833.1_1_15:43477651-43481519:+|nuORF	ENST00000566833.1_1_15:43477651-43481519:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	652.6739501953125	2	652.274238	1302.53392	-0.39929	-0.00026044	-0.3552	-0.00023169	-0.75448	-0.00049213	652.273987681878	77.411	0.55711	77.411	77.133	77.69	0					23	10	3	0	0	0	0.035419	1	28207	28207		70.332	56.426	1	3734800			8782	7136	6284	6334	8550	8550		363			-0.10524313993369105
EEFNREMFW	9	Oxidation (M)	_EEFNREM(Oxidation (M))FW_		EEFNREM(1)FW		EEFNREM(80)FW	0	0	1		ENST00000566833.1_1_15:43477651-43481519:+|nuORF;nc|ENSG00000166946|O95273-2|CCNDBP1;ENSG00000166946|ENST00000300213|CCNDBP1;ENST00000564630.5_1_15:43477651-43478217:+|nuORF	ENST00000566833.1_1_15:43477651-43481519:+|nuORF	ENST00000566833.1_1_15:43477651-43481519:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	652.6749267578125	2	652.274238	1302.53392	-0.78403	-0.0005114	0.06859	4.4739E-05	-0.71544	-0.00046666	652.2744422504924	76.779	0.50642	77.52	77.199	77.705	0.74052					25	9	4	0	0	0	0.024574	1	29102	29102		79.596	65.69	1	3761300			8783	7136	6284	6334	8551	8551		363			-0.10524313993369105
EEFNREMFW	9	Unmodified	_EEFNREMFW_					0	0	0		ENST00000566833.1_1_15:43477651-43481519:+|nuORF;nc|ENSG00000166946|O95273-2|CCNDBP1;ENSG00000166946|ENST00000300213|CCNDBP1;ENST00000564630.5_1_15:43477651-43478217:+|nuORF	ENST00000566833.1_1_15:43477651-43481519:+|nuORF	ENST00000566833.1_1_15:43477651-43481519:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	644.6766967773438	2	644.27678	1286.53901	-0.4311	-0.00027775	0.51429	0.00033134	0.08319	5.3598E-05	644.2769431019714	93.717	0.75804	93.717	93.433	94.191	0					35	14	3	0	0	0	0.053555	1	34433	34433		90.135	61.053	1	3670800			8784	7136	6284	6335	8552	8552					-0.09280010130760274
EEFNREMFW	9	Unmodified	_EEFNREMFW_					0	0	0		ENST00000566833.1_1_15:43477651-43481519:+|nuORF;nc|ENSG00000166946|O95273-2|CCNDBP1;ENSG00000166946|ENST00000300213|CCNDBP1;ENST00000564630.5_1_15:43477651-43478217:+|nuORF	ENST00000566833.1_1_15:43477651-43481519:+|nuORF	ENST00000566833.1_1_15:43477651-43481519:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	644.6771240234375	2	644.27678	1286.53901	-0.61013	-0.0003931	0.53402	0.00034406	-0.07611	-4.9036E-05	644.2770983559546	93.054	0.8112	93.793	93.495	94.306	0.73901					36	15	4	0	0	0	0.074405	1	35356	35356		79.596	63.447	1	3360100			8785	7136	6284	6335	8553	8553					-0.09280010130760274
EEFNRLKTF	9	Unmodified	_EEFNRLKTF_					0	0	0		ENSG00000101966|ENST00000371199|XIAP	ENSG00000101966|ENST00000371199|XIAP	ENSG00000101966|ENST00000371199|XIAP	MULTI-SECPEP	A375_MHC_IP_R1	1	395.6086120605469	3	395.208384	1182.60332	0.21494	8.4946E-05	0.19942	7.8813E-05	0.41436	0.00016376	395.20842385121574	45.509	0.40483	45.509	45.434	45.839	0					11	7	2	0	0	0	0.75519	1	15958	15958		14.405	7.775	1	2127500			8786	2339	6285	6336	8554	8554					0.019325130177094252
EEFNRLKTF	9	Unmodified	_EEFNRLKTF_					0	0	0		ENSG00000101966|ENST00000371199|XIAP	ENSG00000101966|ENST00000371199|XIAP	ENSG00000101966|ENST00000371199|XIAP	MULTI-SECPEP	A375_MHC_IP_R2	2	395.6083679199219	3	395.208384	1182.60332	-0.2771	-0.00010951	0.05068	2.0029E-05	-0.22642	-8.9482E-05	395.5427102183492	44.724	0.30618	45.493	45.34	45.646	0.7691					8	5	2	0	0	0	0.71071	1	16713	16713		14.405	7.775	1	2513300			8787	2339	6285	6336	8555	8555					0.019325130177094252
EEFPALHL	8	Unmodified	_EEFPALHL_					0	0	0		ENSG00000072041|ENST00000266682|SLC6A15;nc|ENSG00000072041|Q9H2J7-3|SLC6A15	ENSG00000072041|ENST00000266682|SLC6A15	ENSG00000072041|ENST00000266682|SLC6A15	MULTI-MSMS	A375_MHC_IP_R1	1	478.64776611328125	2	478.247818	954.481082	-0.21369	-0.0001022	-0.88	-0.00042086	-1.0937	-0.00052305	478.2477147995668	92.645	0.91374	92.645	92.059	92.973	0					33	17	3	0	0	0	0.33392	2	34094	34013;34094		56.048	32.9	1	2372200			8788	1525	6286	6337	8556;8557	8557					0.0020209600613725343
EEFPGGLTI	9	Unmodified	_EEFPGGLTI_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000467077.1_1_3:142074330-142089377:-|nuORF	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-MSMS	A375_MHC_IP_R1	1	482.1450500488281	2	481.745108	961.475663	-0.0061283	-2.9523E-06	0.075361	3.6305E-05	0.069233	3.3353E-05	481.74498174537536	112.64	1.2672	112.64	112.03	113.29	0					59	24	3	0	0	0	0.0093345	3	41428	41206;41373;41428		117.6	57.209	1	5493200			8789	3201	6287	6338	8558;8559;8560	8560					-0.006616275763121848
EEFPGGLTI	9	Unmodified	_EEFPGGLTI_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000467077.1_1_3:142074330-142089377:-|nuORF	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-SECPEP	A375_MHC_IP_R1	1	962.4597778320312	1	962.482939	961.475663	0.4478	0.000431	0.12416	0.0001195	0.57196	0.0005505	962.4829032281515	112.7	1.3198	112.7	112.08	113.4	0					64	25	4	0	0	0	0.010923	1	41357	41357		128.37	84.507	1	37373000			8790	3201	6287	6338	8561	8561					-0.006616275763121848
EEFPGGLTI	9	Unmodified	_EEFPGGLTI_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000467077.1_1_3:142074330-142089377:-|nuORF	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-MSMS	A375_MHC_IP_R2	2	482.1451416015625	2	481.745108	961.475663	-0.37496	-0.00018064	0.0067791	3.2658E-06	-0.36818	-0.00017737	481.74508461422516	111.89	1.3273	112.61	112.1	113.43	0.72459					55	25	3	0	0	0	0.0098824	3	42110	42110;42261;42327		117.6	57.209	1	7308600			8791	3201	6287	6338	8562;8563;8564	8562					-0.006616275763121848
EEFPGGLTI	9	Unmodified	_EEFPGGLTI_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000467077.1_1_3:142074330-142089377:-|nuORF	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-MSMS	A375_MHC_IP_R2	2	962.4844970703125	1	962.482939	961.475663	0.099365	9.5637E-05	-0.029182	-2.8088E-05	0.070183	6.755E-05	962.4827717120376	111.91	1.3787	112.63	112.05	113.43	0.72458					65	26	3	0	0	0	0.0090669	2	42122	42122;42286		123.45	81.356	1	33040000			8792	3201	6287	6338	8565;8566	8565					-0.006616275763121848
EEFQFIKK	8	Unmodified	_EEFQFIKK_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1;MFAP1|p.A66V|1|0.29|ENSG00000140259|chr15:43817331-43817331|G/A|missense_variant	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	535.1893920898438	2	534.78985	1067.56515	-1.0038	-0.00053682	-0.51718	-0.00027658	-1.521	-0.0008134	534.7902532296551	41.292	1.0189	41.292	41.013	42.032	0					29	19	3	0	0	0	0.60242	1	14288	14288		24.021	7.8715	1	6920000			8793	5130	6288	6339	8567	8567					0.034066271030496864
EEFQFIKK	8	Unmodified	_EEFQFIKK_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1;MFAP1|p.A66V|1|0.29|ENSG00000140259|chr15:43817331-43817331|G/A|missense_variant	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	535.1897583007812	2	534.78985	1067.56515	-0.90305	-0.00048294	-0.47303	-0.00025297	-1.3761	-0.00073591	534.7901124034195	40.515	0.61002	41.289	40.93	41.54	0.77451					26	11	3	0	0	0	0.46955	1	15037	15037		39.95	18.413	1	4808200			8794	5130	6288	6339	8568	8568					0.034066271030496864
EEFQFIKKA	9	Unmodified	_EEFQFIKKA_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	A375_MHC_IP_R1	1	380.59173583984375	3	380.541363	1138.60226	0.90472	0.00034428	-0.73464	-0.00027956	0.17008	6.4724E-05	380.5410611989405	44.954	1.1626	44.954	44.626	45.789	0					66	22	5	0	0	0	0.41879	1	15739	15739		23.79	5.4167	1	105230000			8795	5130	6289	6340	8569	8569					0.03850298648808348
EEFQFIKKA	9	Unmodified	_EEFQFIKKA_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	570.70849609375	2	570.308406	1138.60226	0.27365	0.00015606	-0.55135	-0.00031444	-0.2777	-0.00015838	570.3080658706094	44.953	0.70768	44.953	44.676	45.384	0					39	13	5	0	0	0	0.011012	1	15671	15671		173.69	93.01	1	37604000			8796	5130	6289	6340	8570	8570					0.03850298648808348
EEFQFIKKA	9	Unmodified	_EEFQFIKKA_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	380.2572326660156	3	380.541363	1138.60226	0.14285	5.4359E-05	-0.29775	-0.00011331	-0.15491	-5.8949E-05	380.54122762111245	44.088	1.1178	44.858	44.58	45.698	0.7691					51	21	3	0	0	0	0.47674	1	16499	16499		23.79	3.3752	1	100130000			8797	5130	6289	6340	8571	8571					0.03850298648808348
EEFQFIKKA	9	Unmodified	_EEFQFIKKA_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	570.7081909179688	2	570.308406	1138.60226	-0.16147	-9.2091E-05	-0.53684	-0.00030617	-0.69832	-0.00039826	570.3080498384786	44.088	0.55745	44.858	44.631	45.188	0.7691					34	10	4	0	0	0	0.011253	1	16419	16419		160.69	80.014	1	33038000			8798	5130	6289	6340	8572	8572					0.03850298648808348
EEFQGQERS	9	Unmodified	_EEFQGQERS_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;ENST00000468624.5_1_1:113242306-113242605:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-MSMS	A375_MHC_IP_R1	1	555.7153930664062	2	555.246535	1108.47852	-0.44091	-0.00024481	-0.016031	-8.9009E-06	-0.45694	-0.00025371	555.2460958282276	89.02	0.55748	89.02	88.663	89.221	0					25	10	3	0	0	0	0.46038	2	32610	32610;32652		21.747	7.165	1	2418000			8799	6139	6290	6341	8573;8574	8573					-0.07138404189458925
EEFQGQERS	9	Unmodified	_EEFQGQERS_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;ENST00000468624.5_1_1:113242306-113242605:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	555.246535	1108.47852	-0.71115	-0.00039486	-0.18258	-0.00010138	-0.89373	-0.00049624	555.2465420131842	88.237	0.65926	88.969	88.671	89.331	0.7318	-0.025154	-6.9493E-05	NaN	21.747	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2023600			8800	6139	6290	6341							-0.07138404189458925
EEFQKDPQF	9	Unmodified	_EEFQKDPQF_					0	0	0		ENST00000465460.5_1_2:153001287-153006696:-|nuORF;nc|ENSG00000115145|O75886-2|STAM2;ENST00000463854.5_1_2:152988626-153032156:-|nuORF;ENST00000482997.5_1_2:152982712-153032156:-|nuORF;ENSG00000115145|ENST00000263904|STAM2	ENST00000465460.5_1_2:153001287-153006696:-|nuORF	ENST00000465460.5_1_2:153001287-153006696:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	584.7238159179688	2	584.269478	1166.5244	-0.38524	-0.00022509	-0.28879	-0.00016873	-0.67403	-0.00039382	584.2694565324363	42.47	0.4069	43.242	43.116	43.523	0.7724					12	7	2	0	0	0	0.31606	1	15768	15768		39.95	23.007	1	2202400			8801	3273	6291	6342	8575	8575					-0.052197590072410094
EEFQKELSQW	10	Unmodified	_EEFQKELSQW_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11;TFIP11|p.K433*|1|0.38|ENSG00000100109|chr22:26499136-26499137|-/A|frameshift_variant	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	A375_MHC_IP_R1	1	662.7135009765625	2	662.314417	1322.61428	-0.57269	-0.0003793	0.27737	0.00018371	-0.29532	-0.00019559	662.314548297241	76.13	0.70708	76.13	75.815	76.522	0					38	13	4	0	0	0	0.0081946	1	27698	27698		132.38	97.448	1	17133000			8802	2121	6292	6343	8576	8576					-0.03412129398657271
EEFQKELSQW	10	Unmodified	_EEFQKELSQW_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11;TFIP11|p.K433*|1|0.38|ENSG00000100109|chr22:26499136-26499137|-/A|frameshift_variant	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-SECPEP	A375_MHC_IP_R2	2	662.7131958007812	2	662.314417	1322.61428	-0.88199	-0.00058415	0.086331	5.7178E-05	-0.79566	-0.00052698	662.3144342463606	75.516	0.71485	76.256	75.925	76.64	0.74052					37	13	4	0	0	0	0.07526	1	28626	28626		121.35	81.396	1	13845000			8803	2121	6292	6343	8577	8577					-0.03412129398657271
EEFQTPITY	9	Unmodified	_EEFQTPITY_					0	0	0		ENSG00000130165|ENST00000252445|ELOF1	ENSG00000130165|ENST00000252445|ELOF1	ENSG00000130165|ENST00000252445|ELOF1	MULTI-SECPEP	A375_MHC_IP_R1	1	564.665771484375	2	564.266404	1126.51826	-0.41412	-0.00023368	0.064078	3.6157E-05	-0.35005	-0.00019752	564.266479948277	87.823	0.96799	87.823	87.39	88.358	0					71	18	5	0	0	0	0.011107	1	32174	32174		134.3	98.169	1	37788000			8804	4226	6293	6344	8578	8578					-0.03994277238757604
EEFQTPITY	9	Unmodified	_EEFQTPITY_					0	0	0		ENSG00000130165|ENST00000252445|ELOF1	ENSG00000130165|ENST00000252445|ELOF1	ENSG00000130165|ENST00000252445|ELOF1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	564.266404	1126.51826	-0.38009	-0.00021447	0.10066	5.6801E-05	-0.27943	-0.00015767	564.2665638436353	87.298	2.132	88.031	86.592	88.724	0.733	0.10412	2.7993E-05	NaN	134.3	91	41	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34601000			8805	4226	6293	6344							-0.03994277238757604
EEFREFNKY	9	Unmodified	_EEFREFNKY_					0	0	0		nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;ENST00000489243.5_1_9:6758133-6893415:+|nuORF	nc|ENSG00000293552|Q9H3R0-3|KDM4C	nc|ENSG00000293552|Q9H3R0-3|KDM4C	MULTI-MSMS	A375_MHC_IP_R1	1	631.6954956054688	2	631.296027	1260.5775	-1.0306	-0.00065059	0.67054	0.00042331	-0.36003	-0.00022728	631.2963732469574	38.262	0.35603	38.262	38.067	38.423	0					14	6	3	0	0	0	0.0096896	1	12989	12989		110.67	85.684	1	4409900			8806	2723	6294	6345	8579	8579					-0.042363812245639565
EEFREFNKY	9	Unmodified	_EEFREFNKY_					0	0	0		nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;ENST00000489243.5_1_9:6758133-6893415:+|nuORF	nc|ENSG00000293552|Q9H3R0-3|KDM4C	nc|ENSG00000293552|Q9H3R0-3|KDM4C	MULTI-SECPEP	A375_MHC_IP_R1	1	421.59991455078125	3	421.199777	1260.5775	-0.3485	-0.00014679	0.55143	0.00023226	0.20293	8.5473E-05	421.19998324368476	38.284	0.56164	38.284	38.016	38.577	0					26	10	4	0	0	0	0.011405	1	12950	12950		100.71	73.485	1	13674000			8807	2723	6294	6345	8580	8580					-0.042363812245639565
EEFREFNKY	9	Unmodified	_EEFREFNKY_					0	0	0		nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;ENST00000489243.5_1_9:6758133-6893415:+|nuORF	nc|ENSG00000293552|Q9H3R0-3|KDM4C	nc|ENSG00000293552|Q9H3R0-3|KDM4C	MULTI-MSMS	A375_MHC_IP_R2	2	421.5997009277344	3	421.199777	1260.5775	-0.42275	-0.00017806	0.31005	0.00013059	-0.11271	-4.7472E-05	421.1998809449557	37.531	0.51103	38.302	38.07	38.581	0.7709					30	9	4	0	0	0	0.0090297	1	13729	13729		81.915	50.279	1	15740000			8808	2723	6294	6345	8581	8581					-0.042363812245639565
EEFREFNKY	9	Unmodified	_EEFREFNKY_					0	0	0		nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;ENST00000489243.5_1_9:6758133-6893415:+|nuORF	nc|ENSG00000293552|Q9H3R0-3|KDM4C	nc|ENSG00000293552|Q9H3R0-3|KDM4C	MULTI-MSMS	A375_MHC_IP_R2	2	631.695556640625	2	631.296027	1260.5775	-1.1201	-0.00070714	0.095136	6.0059E-05	-1.025	-0.00064708	631.2961418957905	37.53	0.35857	38.301	38.12	38.479	0.7709					11	6	2	0	0	0	0.0099679	1	13758	13758		121.53	86.602	1	4020300			8809	2723	6294	6345	8582	8582					-0.042363812245639565
EEFRHVIAW	9	Unmodified	_EEFRHVIAW_					0	0	0		ENST00000460850.1_1_1:157105261-157106150:-|nuORF;nc|ENSG00000117036|P41162-2|ETV3;ENSG00000117036|ENST00000368192|ETV3;ENSG00000253831|ENST00000454449|ETV3L	ENST00000460850.1_1_1:157105261-157106150:-|nuORF;ENSG00000253831|ENST00000454449|ETV3L	ENST00000460850.1_1_1:157105261-157106150:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	396.605224609375	3	396.204974	1185.59309	-0.17084	-6.7686E-05	0.45062	0.00017854	0.27978	0.00011085	396.2051290452487	65.214	1.1711	65.214	64.597	65.768	0					54	22	4	0	0	0	0.35487	1	23578	23578		40.239	34.836	1	6822200			8810	3453;9869	6295	6346	8583	8583					0.007719500831171899
EEFRHVIAW	9	Unmodified	_EEFRHVIAW_					0	0	0		ENST00000460850.1_1_1:157105261-157106150:-|nuORF;nc|ENSG00000117036|P41162-2|ETV3;ENSG00000117036|ENST00000368192|ETV3;ENSG00000253831|ENST00000454449|ETV3L	ENST00000460850.1_1_1:157105261-157106150:-|nuORF;ENSG00000253831|ENST00000454449|ETV3L	ENST00000460850.1_1_1:157105261-157106150:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	594.158203125	2	593.803823	1185.59309	-0.46802	-0.00027791	0.69781	0.00041436	0.22979	0.00013645	593.8042952278245	65.253	0.76479	65.253	64.851	65.616	0					35	14	4	0	0	0	0.04395	1	23650	23650		81.89	55.007	1	7221700			8811	3453;9869	6295	6346	8584	8584					0.007719500831171899
EEFRHVIAW	9	Unmodified	_EEFRHVIAW_					0	0	0		ENST00000460850.1_1_1:157105261-157106150:-|nuORF;nc|ENSG00000117036|P41162-2|ETV3;ENSG00000117036|ENST00000368192|ETV3;ENSG00000253831|ENST00000454449|ETV3L	ENST00000460850.1_1_1:157105261-157106150:-|nuORF;ENSG00000253831|ENST00000454449|ETV3L	ENST00000460850.1_1_1:157105261-157106150:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	396.60498046875	3	396.204974	1185.59309	-0.042814	-1.6963E-05	-0.13181	-5.2224E-05	-0.17463	-6.9188E-05	396.2048985334233	64.289	0.96692	65.029	64.496	65.463	0.74022					46	18	4	0	0	0	0.095851	1	24378	24378		51.415	31.789	1	9875900			8812	3453;9869	6295	6346	8585	8585					0.007719500831171899
EEFRHVIAW	9	Unmodified	_EEFRHVIAW_					0	0	0		ENST00000460850.1_1_1:157105261-157106150:-|nuORF;nc|ENSG00000117036|P41162-2|ETV3;ENSG00000117036|ENST00000368192|ETV3;ENSG00000253831|ENST00000454449|ETV3L	ENST00000460850.1_1_1:157105261-157106150:-|nuORF;ENSG00000253831|ENST00000454449|ETV3L	ENST00000460850.1_1_1:157105261-157106150:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	594.2036743164062	2	593.803823	1185.59309	-0.48533	-0.00028819	-0.004587	-2.7238E-06	-0.48991	-0.00029091	593.8037788736727	64.323	0.61125	65.063	64.699	65.31	0.74023					27	11	3	0	0	0	0.05021	1	24381	24381		88.954	78.88	1	8319400			8813	3453;9869	6295	6346	8586	8586					0.007719500831171899
EEFRIRYEDEI	11	Unmodified	_EEFRIRYEDEI_					0	0	0		nc|ENSG00000167767|Q6KB66-2|KRT80;ENSG00000167767|ENST00000394815|KRT80;CON__Q6KB66-1;nc|ENSG00000167767|Q6KB66-3|KRT80;ENST00000466011.1_1_12:52565184-52579482:-|nuORF	nc|ENSG00000167767|Q6KB66-2|KRT80	nc|ENSG00000167767|Q6KB66-2|KRT80	MULTI-MSMS	A375_MHC_IP_R1	1	500.64404296875	3	500.243934	1497.70997	-0.22059	-0.00011035	-0.33182	-0.00016599	-0.55241	-0.00027634	500.2437833073984	71.341	0.96601	71.341	70.749	71.715	0					49	18	4	0	0	0	0.70017	1	25861	25861		15.538	15.538	1	47743000		+	8814	627	6296	6347	8587	8587					-0.018974012784156002
EEFRIRYEDEI	11	Unmodified	_EEFRIRYEDEI_					0	0	0		nc|ENSG00000167767|Q6KB66-2|KRT80;ENSG00000167767|ENST00000394815|KRT80;CON__Q6KB66-1;nc|ENSG00000167767|Q6KB66-3|KRT80;ENST00000466011.1_1_12:52565184-52579482:-|nuORF	nc|ENSG00000167767|Q6KB66-2|KRT80	nc|ENSG00000167767|Q6KB66-2|KRT80	MULTI-MSMS	A375_MHC_IP_R1	1	750.2618408203125	2	749.862263	1497.70997	-0.35806	-0.00026849	-0.18149	-0.00013609	-0.53954	-0.00040458	749.8620472475051	71.387	0.50853	71.387	71.057	71.565	0					30	9	4	0	0	0	0.64288	1	25882	25882		14.405	0	1	18131000		+	8815	627	6296	6347	8588	8588					-0.018974012784156002
EEFRIRYEDEI	11	Unmodified	_EEFRIRYEDEI_					0	0	0		nc|ENSG00000167767|Q6KB66-2|KRT80;ENSG00000167767|ENST00000394815|KRT80;CON__Q6KB66-1;nc|ENSG00000167767|Q6KB66-3|KRT80;ENST00000466011.1_1_12:52565184-52579482:-|nuORF	nc|ENSG00000167767|Q6KB66-2|KRT80	nc|ENSG00000167767|Q6KB66-2|KRT80	MULTI-MSMS	A375_MHC_IP_R2	2	500.64361572265625	3	500.243934	1497.70997	-0.61007	-0.00030518	-0.43109	-0.00021565	-1.0412	-0.00052083	500.2437440994666	70.693	1.063	71.427	71.048	72.111	0.73421					59	20	4	0	0	0	0.70017	2	26763	26763;27018		15.538	10.646	1	65645000		+	8816	627	6296	6347	8589;8590	8589					-0.018974012784156002
EEFRKAFW	8	Unmodified	_EEFRKAFW_					0	0	0			REV__ENSG00000181192|ENST00000263035|DHTKD1	REV__ENSG00000181192|ENST00000263035|DHTKD1	MULTI-SECPEP	A375_MHC_IP_R2	2	556.6686401367188	2	556.779816	1111.54508	-0.77879	-0.00043362	3.7203	0.0020714	2.9416	0.0016378	557.2836582023486	77.37	0.15494	78.113	78.01	78.165	0.74294					4	2	2	0	0	0	0.93416	1	29373	29373		9.3474	0	1	438590	+		8817	21641	6297	6348	8591	8591					-0.006231238369082348
EEFRNFSRY	9	Unmodified	_EEFRNFSRY_					0	0	0		ENSG00000066135|ENST00000372396|KDM4A	ENSG00000066135|ENST00000372396|KDM4A	ENSG00000066135|ENST00000372396|KDM4A	MSMS	A375_MHC_IP_R2	2	416.4306640625	3	416.531638	1246.57309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.18	1	37.951	37.451	38.451	0.7709								0	0	0	0.15119	1	13590	13590		19.626	10.082	1				8818	1404	6298	6349	8592	8592					-0.040338456474728446
EEFRRLLYF	9	Unmodified	_EEFRRLLYF_					0	0	0		ENSG00000121690|ENST00000241051|DEPDC7;nc|ENSG00000121690|Q96QD5-2|DEPDC7	ENSG00000121690|ENST00000241051|DEPDC7	ENSG00000121690|ENST00000241051|DEPDC7	MULTI-SECPEP	A375_MHC_IP_R1	1	425.29620361328125	3	424.896029	1271.66626	0.010669	4.533E-06	0.25022	0.00010632	0.26089	0.00011085	424.8960607594926	88.872	0.55836	88.872	88.612	89.171	0					23	10	3	0	0	0	0.23313	1	32638	32638		57.249	30.026	1	1241700			8819	3730	6299	6350	8593	8593					0.04129078805772224
EEFRRLLYF	9	Unmodified	_EEFRRLLYF_					0	0	0		ENSG00000121690|ENST00000241051|DEPDC7;nc|ENSG00000121690|Q96QD5-2|DEPDC7	ENSG00000121690|ENST00000241051|DEPDC7	ENSG00000121690|ENST00000241051|DEPDC7	MULTI-SECPEP	A375_MHC_IP_R2	2	424.3080749511719	3	424.896029	1271.66626	-0.094006	-3.9943E-05	-0.076	-3.2292E-05	-0.17001	-7.2235E-05	424.89600988955584	88.041	0.50775	88.773	88.468	88.976	0.7318					19	9	3	0	0	0	0.46045	1	33502	33502		29.082	15.467	1	2329600			8820	3730	6299	6350	8594	8594					0.04129078805772224
EEFSLNRLI	9	Unmodified	_EEFSLNRLI_					0	0	0			REV__nc|ENSG00000189079|Q68CP9-3|ARID2	REV__nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-SECPEP	A375_MHC_IP_R2	2	560.148193359375	2	560.803488	1119.59242	-0.75682	-0.00042443	-0.2898	-0.00016252	-1.0466	-0.00058695	560.8032627738752	48.961	0.40885	49.718	49.434	49.843	0.75736					13	7	2	0	0	0	0.71541	1	18321	18321		16.942	0	1	1444900	+		8821	22138	6300	6351	8595	8595					0.03741110643454704
EEFSNYHKTQK	11	Unmodified	_EEFSNYHKTQK_					0	0	0			REV__ENSG00000124177|ENST00000373233|CHD6	REV__ENSG00000124177|ENST00000373233|CHD6	MULTI-MSMS	A375_MHC_IP_R1	1	706.2355346679688	2	705.836048	1409.65754	-0.68153	-0.00048105	-0.50849	-0.00035891	-1.19	-0.00083996	705.8363363206897	65.053	0.60983	65.053	64.75	65.36	0					36	11	4	0	0	0	0.33584	1	23521	23521		43.982	11.196	1	6796700	+		8822	18278	6301	6352	8596	8596					-0.03089939621418125
EEFSNYHKTQK	11	Unmodified	_EEFSNYHKTQK_					0	0	0			REV__ENSG00000124177|ENST00000373233|CHD6	REV__ENSG00000124177|ENST00000373233|CHD6	MULTI-MSMS	A375_MHC_IP_R2	2	706.2352905273438	2	705.836048	1409.65754	-0.64582	-0.00045584	0.10137	7.1553E-05	-0.54444	-0.00038429	705.835982098768	64.289	0.51025	65.029	64.749	65.259	0.74022					24	9	3	0	0	0	0.31304	1	24344	24344		45.74	28.627	1	7809900	+		8823	18278	6301	6352	8597	8597					-0.03089939621418125
EEFSNYHKTQK	11	Unmodified	_EEFSNYHKTQK_					0	0	0			REV__ENSG00000124177|ENST00000373233|CHD6	REV__ENSG00000124177|ENST00000373233|CHD6	MULTI-SECPEP	A375_MHC_IP_R2	2	705.2139892578125	2	705.836048	1409.65754	-0.64582	-0.00045584	0.10137	7.1553E-05	-0.54444	-0.00038429	705.835982098768	64.289	0.51025	65.029	64.749	65.259	0.74022					24	9	3	0	0	0	0.85604	1	24350	24350		32.037	10.501	1	7809900	+		8824	18278	6301	6352	8598	8598					-0.03089939621418125
EEFSRAAEKLY	11	Unmodified	_EEFSRAAEKLY_					0	0	0		nc|ENSG00000143742|P49458-2|SRP9;ENSG00000143742|ENST00000304786|SRP9	nc|ENSG00000143742|P49458-2|SRP9	nc|ENSG00000143742|P49458-2|SRP9	MULTI-MSMS	A375_MHC_IP_R1	1	448.62579345703125	3	448.226103	1341.65648	0.2667	0.00011954	-0.348	-0.00015598	-0.081298	-3.644E-05	448.2259393331274	44.497	0.86453	44.497	44.216	45.081	0					52	16	5	0	0	0	0.16153	1	15488	15488		59.496	31.315	1	90675000			8825	5428	6302	6353	8599	8599					-0.000681539902871009
EEFSRAAEKLY	11	Unmodified	_EEFSRAAEKLY_					0	0	0		nc|ENSG00000143742|P49458-2|SRP9;ENSG00000143742|ENST00000304786|SRP9	nc|ENSG00000143742|P49458-2|SRP9	nc|ENSG00000143742|P49458-2|SRP9	MULTI-MSMS	A375_MHC_IP_R1	1	672.23486328125	2	671.835517	1341.65648	-0.25363	-0.0001704	-0.089584	-6.0186E-05	-0.34322	-0.00023058	671.8354195498391	44.497	0.81389	44.497	44.216	45.03	0					47	15	5	0	0	0	0.0013923	1	15489	15489		115.82	80.889	1	64106000			8826	5428	6302	6353	8600	8600					-0.000681539902871009
EEFSRAAEKLY	11	Unmodified	_EEFSRAAEKLY_					0	0	0		nc|ENSG00000143742|P49458-2|SRP9;ENSG00000143742|ENST00000304786|SRP9	nc|ENSG00000143742|P49458-2|SRP9	nc|ENSG00000143742|P49458-2|SRP9	MULTI-MSMS	A375_MHC_IP_R2	2	448.6257019042969	3	448.226103	1341.65648	-0.12506	-5.6054E-05	-0.18313	-8.2084E-05	-0.30819	-0.00013814	448.2260165419689	43.826	0.96026	44.595	44.278	45.239	0.76909					57	18	5	0	0	0	0.16153	1	16284	16284		59.496	31.315	1	86355000			8827	5428	6302	6353	8601	8601					-0.000681539902871009
EEFSRAAEKLY	11	Unmodified	_EEFSRAAEKLY_					0	0	0		nc|ENSG00000143742|P49458-2|SRP9;ENSG00000143742|ENST00000304786|SRP9	nc|ENSG00000143742|P49458-2|SRP9	nc|ENSG00000143742|P49458-2|SRP9	MULTI-SECPEP	A375_MHC_IP_R2	2	672.1569213867188	2	671.835517	1341.65648	-0.53863	-0.00036187	-0.035627	-2.3935E-05	-0.57425	-0.0003858	671.8354295675507	43.783	0.80769	44.553	44.278	45.086	0.76909					49	15	5	0	0	0	0.90673	1	16240	16240		18.373	6.8784	1	47420000			8828	5428	6302	6353	8602	8602					-0.000681539902871009
EEFSTAREF	9	Unmodified	_EEFSTAREF_					0	0	0			REV__ENST00000482481.1_1_1:94643162-94655618:-|nuORF	REV__ENST00000482481.1_1_1:94643162-94655618:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	559.2127075195312	2	558.253828	1114.4931	-0.38247	-0.00021352	-0.39984	-0.00022321	-0.78231	-0.00043673	558.2537155742389	45.888	0.96106	45.888	45.284	46.245	0					38	18	3	0	0	0	0.60101	1	15863	15863		14.838	4.0143	1	9876000	+		8829	19051	6303	6354	8603	8603					-0.05956332041341739
EEFSYGYSL	9	Unmodified	_EEFSYGYSL_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-MSMS	A375_MHC_IP_R1	1	548.1375122070312	2	547.73748	1093.46041	-0.54308	-0.00029747	0.24254	0.00013285	-0.30055	-0.00016462	547.7376315787138	96.021	0.65999	96.021	95.767	96.427	0					28	12	3	0	0	0	0.067501	1	35291	35291		57.471	32.072	1	2373400			8830	6014	6304	6355	8604	8604					-0.0825853916419419
EEFSYGYSL	9	Unmodified	_EEFSYGYSL_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-SECPEP	A375_MHC_IP_R1	1	547.2113647460938	2	547.73748	1093.46041	-0.052263	-2.8627E-05	0.17865	9.7853E-05	0.12639	6.9227E-05	547.7377544816926	48.931	0.40491	48.931	48.679	49.084	0					12	7	3	0	0	0	0.69504	1	17278	17278		7.9102	0	1	1136200			8831	6014	6304	6355	8605	8605					-0.0825853916419419
EEFSYGYSL	9	Unmodified	_EEFSYGYSL_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-MSMS	A375_MHC_IP_R2	2	548.2210693359375	2	547.73748	1093.46041	-0.6233	-0.0003414	0.095221	5.2156E-05	-0.52808	-0.00028925	547.7375436310133	95.52	0.71407	96.271	95.888	96.602	0.75045					23	13	2	0	0	0	0.1478	1	36326	36326		42.095	21.641	1	4187200			8832	6014	6304	6355	8606	8606					-0.0825853916419419
EEFSYGYSL	9	Unmodified	_EEFSYGYSL_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-MSMS	A375_MHC_IP_R2	2	1096.1998291015625	1	1094.46768	1093.46041	0.25836	0.00028277	0.096836	0.00010598	0.3552	0.00038875	1094.4675526531123	95.534	0.66283	96.284	95.99	96.653	0.75044					27	12	3	0	0	0	0.38603	1	36344	36344		25.399	9.5521	1	4757500			8833	6014	6304	6355	8607	8607					-0.0825853916419419
EEFSYGYSL	9	Unmodified	_EEFSYGYSL_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-MATCH	A375_MHC_IP_R1	1		1	1094.46768	1093.46041	0.089616	9.8082E-05	0.33366	0.00036518	0.42328	0.00046327	1094.467790870627	96.091	0.60873	96.091	95.767	96.376	0	-0.096495	0.00014416	NaN	25.399	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5814100			8834	6014	6304	6355							-0.0825853916419419
EEFSYGYSL	9	Unmodified	_EEFSYGYSL_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-MATCH	A375_MHC_IP_R2	2		2	547.73748	1093.46041	-0.69874	-0.00038273	-0.26247	-0.00014376	-0.96121	-0.00052649	548.2376730038761	48.178	0.30096	48.937	48.731	49.032	0.75885	0.0030728	-0.00035056	NaN	1.8442	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1033200			8835	6014	6304	6355							-0.0825853916419419
EEFSYIRRL	9	Unmodified	_EEFSYIRRL_					0	0	0		ENSG00000153391|ENST00000334598|INO80C;nc|ENSG00000153391|Q6PI98-4|INO80C	ENSG00000153391|ENST00000334598|INO80C	ENSG00000153391|ENST00000334598|INO80C	MULTI-MSMS	A375_MHC_IP_R1	1	405.2838134765625	3	404.8839	1211.62987	-0.3926	-0.00015896	0.54065	0.0002189	0.14805	5.9945E-05	404.88404965951946	57.4	1.0182	57.4	56.956	57.974	0					50	19	4	0	0	0	0.1915	1	20569	20569		38.615	21.172	1	7918400			8836	6029	6305	6356	8608	8608					0.032522019090492904
EEFSYIRRL	9	Unmodified	_EEFSYIRRL_					0	0	0		ENSG00000153391|ENST00000334598|INO80C;nc|ENSG00000153391|Q6PI98-4|INO80C	ENSG00000153391|ENST00000334598|INO80C	ENSG00000153391|ENST00000334598|INO80C	MULTI-SECPEP	A375_MHC_IP_R2	2	405.6183166503906	3	404.8839	1211.62987	-0.35364	-0.00014318	0.094419	3.8229E-05	-0.25923	-0.00010496	404.8838819961901	56.557	0.61294	57.308	56.948	57.561	0.75015					31	11	4	0	0	0	0.35487	1	21356	21356		33.445	12.864	1	8663100			8837	6029	6305	6356	8609	8609					0.032522019090492904
EEFTAEQVY	9	Unmodified	_EEFTAEQVY_					0	0	0			REV__ENSG00000079557|ENST00000226355|AFM	REV__ENSG00000079557|ENST00000226355|AFM	MSMS	A375_MHC_IP_R1	1	558.2322998046875	2	558.248212	1114.48187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.931	1	50.931	50.431	51.431	0								0	0	0	0.15486	1	18064	18064		10.824	0	1		+		8838	16736	6306	6357	8610	8610					-0.07079154135476529
EEFTDPLSF	9	Unmodified	_EEFTDPLSF_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-SECPEP	A375_MHC_IP_R1	1	1084.298828125	1	1084.48333	1083.47606	-0.35859	-0.00038888	0.036623	3.9718E-05	-0.32196	-0.00034916	1084.4826415288017	124.12	0.34949	124.12	123.94	124.29	0					9	6	2	0	0	0	0.0018583	1	46581	46581		164.52	107.04	1	24168000			8839	1565	6307	6358	8611	8611					-0.062342526471411475
EEFTDPLSF	9	Unmodified	_EEFTDPLSF_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MATCH	A375_MHC_IP_R2	2		1	1084.48333	1083.47606	0.096292	0.00010443	0.22677	0.00024593	0.32306	0.00035035	1084.4836391839892	123.48	0.403	123.86	123.68	124.09	0.3766	-0.1293	0.00010621	NaN	164.52	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20846000			8840	1565	6307	6358							-0.062342526471411475
EEFTFKSPV	9	Unmodified	_EEFTFKSPV_					0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	MULTI-SECPEP	A375_MHC_IP_R1	1	1084.298828125	1	1083.5357	1082.52843	-0.36972	-0.00040061	1.9074	0.0020668	1.5377	0.0016662	1083.53768205608	124.1	0.25046	124.1	123.89	124.14	0					5	4	2	0	0	0	0.47368	1	46581	46581		34.102	8.7031	1	16685000	+		8841	16329	6308	6359	8612	8612					-0.009536695135238915
EEFTFKSPV	9	Unmodified	_EEFTFKSPV_					0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	MULTI-MATCH	A375_MHC_IP_R2	2		1	1083.5357	1082.52843	0.091765	9.943E-05	2.1971	0.0023806	2.2888	0.00248	1083.537475332677	123.37	0.60632	123.75	123.33	123.93	0.37661	-0.17818	5.168E-05	NaN	34.102	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51555000	+		8842	16329	6308	6359							-0.009536695135238915
EEFTHKDGVW	10	Unmodified	_EEFTHKDGVW_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R1	1	416.9281005859375	3	416.527894	1246.56185	0.23202	9.6645E-05	0.56143	0.00023385	0.79346	0.0003305	416.52830678724945	40.26	1.3715	40.26	39.541	40.913	0					49	26	4	0	0	0	0.26272	2	13793	13793;13882		42.835	42.835	1	28144000			8843	7864	6309	6360	8613;8614	8613					-0.05156667741630372
EEFTHKDGVW	10	Unmodified	_EEFTHKDGVW_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R1	1	624.6881103515625	2	624.288202	1246.56185	-0.52751	-0.00032932	0.30662	0.00019142	-0.22089	-0.0001379	624.2884210364027	40.254	0.51001	40.254	39.999	40.509	0					24	9	4	0	0	0	4.8543E-05	1	13811	13811		174.48	174.48	1	14161000			8844	7864	6309	6360	8615	8615					-0.05156667741630372
EEFTHKDGVW	10	Unmodified	_EEFTHKDGVW_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R2	2	624.6879272460938	2	624.288202	1246.56185	-0.82101	-0.00051255	0.56768	0.0003544	-0.25333	-0.00015815	624.2883711724825	39.513	0.86343	40.288	39.914	40.777	0.77451					31	16	4	0	0	0	2.6603E-05	1	14578	14578		179.28	179.28	1	11736000			8845	7864	6309	6360	8616	8616					-0.05156667741630372
EEFTHKDGVW	10	Unmodified	_EEFTHKDGVW_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	A375_MHC_IP_R2	2	416.9278564453125	3	416.527894	1246.56185	-0.077707	-3.2367E-05	0.119	4.9566E-05	0.041291	1.7199E-05	416.5279655620557	39.503	0.60942	40.278	40.016	40.626	0.77451					34	11	4	0	0	0	0.70461	1	14563	14563		36.395	19.829	1	28920000			8846	7864	6309	6360	8617	8617					-0.05156667741630372
EEFTLVPTVC	10	Unmodified	_EEFTLVPTVC_					0	0	0			REV__nc|ENSG00000242110|Q9UHK6-5|AMACR	REV__nc|ENSG00000242110|Q9UHK6-5|AMACR	MULTI-SECPEP	A375_MHC_IP_R1	1	569.0404663085938	2	569.278457	1136.54236	-0.72085	-0.00041037	2.3666	0.0013472	1.6457	0.00093687	569.2778215134003	67.939	0.55535	67.939	67.654	68.209	0					18	10	3	0	0	0	0.85226	1	24712	24712		10.074	0	1	758720	+		8847	27523	6310	6361	8618	8618					-0.020447600767283802
EEFTSEKKPD	10	Unmodified	_EEFTSEKKPD_					0	0	0			REV__nc|ENSG00000173083|Q9Y251-3|HPSE	REV__nc|ENSG00000173083|Q9Y251-3|HPSE	MULTI-SECPEP	A375_MHC_IP_R2	2	404.6210632324219	3	403.859309	1208.5561	0.17023	6.875E-05	1.2351	0.00049879	1.4053	0.00056754	403.8599679418573	43.407	0.30371	44.18	44.079	44.383	0.7724					7	5	2	0	0	0	0.91909	1	16233	16233		3.0723	0	1	817470	+		8848	21192	6311	6362	8619	8619					-0.039838110439632146
EEFTTCGTL	9	Unmodified	_EEFTTCGTL_					0	0	0			REV__nc|ENSG00000125779|Q9BZ23-2|PANK2	REV__nc|ENSG00000125779|Q9BZ23-2|PANK2	MULTI-SECPEP	A375_MHC_IP_R2	2	501.1180419921875	2	500.718233	999.421912	-0.38542	-0.00019299	0.85253	0.00042688	0.46711	0.00023389	500.71846291524065	111.95	0.97012	112.67	112.2	113.17	0.72459					25	18	2	0	0	0	0.65246	1	42269	42269		15.847	2.3393	1	1585700	+		8849	18362	6312	6363	8620	8620					-0.07782168070366424
EEFTVRDGY	9	Unmodified	_EEFTVRDGY_					0	0	0		ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ;nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ;ENST00000506903.1_1_4:26422193-26426401:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	558.6534423828125	2	558.253828	1114.4931	-0.38247	-0.00021352	-0.39984	-0.00022321	-0.78231	-0.00043673	558.2537155742389	45.888	0.96106	45.888	45.284	46.245	0					38	18	3	0	0	0	0.018261	1	16050	16050		85.642	47.668	1	9876000			8850	7274	6313	6364	8621	8621					-0.05956332041341739
EEFTVRDGY	9	Unmodified	_EEFTVRDGY_					0	0	0		ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ;nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ;ENST00000506903.1_1_4:26422193-26426401:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	558.6533813476562	2	558.253828	1114.4931	-0.79351	-0.00044298	0.40982	0.00022878	-0.38369	-0.0002142	558.2542996280001	45.233	0.71136	45.999	45.642	46.353	0.76518					33	13	3	0	0	0	0.032333	2	16861	16861;17012		72.968	36.841	1	10700000			8851	7274	6313	6364	8622;8623	8622					-0.05956332041341739
EEFVEVGRL	9	Unmodified	_EEFVEVGRL_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENST00000586541.5_2_17:66524793-66526587:+|nuORF	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-SECPEP	A375_MHC_IP_R1	1	538.653076171875	2	539.282389	1076.55022	-0.62351	-0.00033625	0.1719	9.27E-05	-0.45162	-0.00024355	539.2822634422129	73.127	0.45583	73.127	72.88	73.336	0					10	8	2	0	0	0	0.59098	1	26617	26617		16.149	2.2431	1	1122900			8852	2847	6314	6365	8624	8624					0.01501135235048423
EEFVPGVKRY	10	Unmodified	_EEFVPGVKRY_					0	0	0		nc|ENSG00000179886|Q53EQ6-2|TIGD5;ENSG00000179886|ENST00000504548|TIGD5	nc|ENSG00000179886|Q53EQ6-2|TIGD5	nc|ENSG00000179886|Q53EQ6-2|TIGD5	MULTI-SECPEP	A375_MHC_IP_R1	1	408.9521789550781	3	408.552151	1222.63462	-0.04014	-1.6399E-05	0.021465	8.7694E-06	-0.018676	-7.6301E-06	408.5521452596218	40.451	0.96146	40.451	40.203	41.164	0					29	18	2	0	0	0	0.74754	1	13872	13872		14.957	5.4132	1	58428000			8853	8257	6315	6366	8625	8625					0.03221086051803468
EEFVPGVKRY	10	Unmodified	_EEFVPGVKRY_					0	0	0		nc|ENSG00000179886|Q53EQ6-2|TIGD5;ENSG00000179886|ENST00000504548|TIGD5	nc|ENSG00000179886|Q53EQ6-2|TIGD5	nc|ENSG00000179886|Q53EQ6-2|TIGD5	MULTI-SECPEP	A375_MHC_IP_R1	1	612.7246704101562	2	612.324588	1222.63462	-0.23884	-0.00014625	-0.024782	-1.5175E-05	-0.26363	-0.00016142	612.3244318972457	40.484	0.35534	40.484	40.254	40.609	0					17	6	3	0	0	0	0.050206	1	13890	13890		96.367	79.254	1	11869000			8854	8257	6315	6366	8626	8626					0.03221086051803468
EEFVPGVKRY	10	Unmodified	_EEFVPGVKRY_					0	0	0		nc|ENSG00000179886|Q53EQ6-2|TIGD5;ENSG00000179886|ENST00000504548|TIGD5	nc|ENSG00000179886|Q53EQ6-2|TIGD5	nc|ENSG00000179886|Q53EQ6-2|TIGD5	MULTI-MSMS	A375_MHC_IP_R2	2	612.7241821289062	2	612.324588	1222.63462	-0.57315	-0.00035095	0.12468	7.6345E-05	-0.44847	-0.00027461	612.324570110848	39.724	0.60992	40.499	40.269	40.879	0.77451					25	11	4	0	0	0	0.054029	1	14668	14668		96.367	75.952	1	11449000			8855	8257	6315	6366	8627	8627					0.03221086051803468
EEFVPGVKRY	10	Unmodified	_EEFVPGVKRY_					0	0	0		nc|ENSG00000179886|Q53EQ6-2|TIGD5;ENSG00000179886|ENST00000504548|TIGD5	nc|ENSG00000179886|Q53EQ6-2|TIGD5	nc|ENSG00000179886|Q53EQ6-2|TIGD5	MULTI-SECPEP	A375_MHC_IP_R2	2	408.9520568847656	3	408.552151	1222.63462	-0.025293	-1.0333E-05	-0.089705	-3.6649E-05	-0.115	-4.6982E-05	408.5521167967099	39.717	1.4747	40.492	39.556	41.031	0.77451					63	28	5	0	0	0	0.83355	1	14643	14643		19.626	11.182	1	67561000			8856	8257	6315	6366	8628	8628					0.03221086051803468
EEFVTFPV	8	Unmodified	_EEFVTFPV_					0	0	0			REV__ENSG00000135476|ENST00000257934|ESPL1	REV__ENSG00000135476|ENST00000257934|ESPL1	MULTI-MSMS	A375_MHC_IP_R2	2	967.631103515625	1	967.477125	966.469849	-0.073152	-7.0773E-05	0.56279	0.00054449	0.48964	0.00047371	967.479412810302	122.98	0.25424	123.35	123.28	123.53	0.3766					5	4	2	0	0	0	0.7758	1	47268	47268		10.183	0	1	14047000	+		8857	18857	6316	6367	8629	8629					-0.0147272608799085
EEFVVEKVL	9	Unmodified	_EEFVVEKVL_					0	0	0		ENSG00000122565|ENST00000396386|CBX3	ENSG00000122565|ENST00000396386|CBX3	ENSG00000122565|ENST00000396386|CBX3	MULTI-SECPEP	A375_MHC_IP_R2	2	546.6356811523438	2	546.30279	1090.59103	-0.67485	-0.00036867	1.1174	0.00061046	0.44258	0.00024179	546.3022414580148	84.758	0.91377	85.494	85.12	86.034	0.73602					42	17	4	0	0	0	0.63749	1	32290	32290		21.537	7.6309	1	4717600			8858	3792	6317	6368	8630	8630					0.04935476554669549
EEFWHTIRY	9	Unmodified	_EEFWHTIRY_					0	0	0		nc|ENSG00000013392|Q9UIY3-2|RWDD2A;ENSG00000013392|ENST00000369724|RWDD2A	nc|ENSG00000013392|Q9UIY3-2|RWDD2A	nc|ENSG00000013392|Q9UIY3-2|RWDD2A	MULTI-SECPEP	A375_MHC_IP_R1	1	427.18670654296875	3	427.540134	1279.59857	0.064682	2.7654E-05	-0.003799	-1.6242E-06	0.060883	2.603E-05	427.87438250443	68.994	0.35276	68.994	68.769	69.121	0					11	6	2	0	0	0	0.73926	1	25058	25058		12.873	8.756	1	1269000			8859	1021	6318	6369	8631	8631					-0.03004371125052785
EEFWHTIRY	9	Unmodified	_EEFWHTIRY_					0	0	0		nc|ENSG00000013392|Q9UIY3-2|RWDD2A;ENSG00000013392|ENST00000369724|RWDD2A	nc|ENSG00000013392|Q9UIY3-2|RWDD2A	nc|ENSG00000013392|Q9UIY3-2|RWDD2A	MULTI-SECPEP	A375_MHC_IP_R2	2	427.93988037109375	3	427.540134	1279.59857	-0.075947	-3.247E-05	-0.2235	-9.5555E-05	-0.29945	-0.00012803	427.54002659886766	68.285	0.40646	69.02	68.765	69.171	0.73511					12	7	2	0	0	0	0.74875	1	25919	25919		15.248	9.8458	1	1927200			8860	1021	6318	6369	8632	8632					-0.03004371125052785
EEFWLFCPLRW	11	Unmodified	_EEFWLFCPLRW_					0	0	0		ENST00000335281.8_1_14:52434561-52434765:+|nuORF	ENST00000335281.8_1_14:52434561-52434765:+|nuORF	ENST00000335281.8_1_14:52434561-52434765:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	508.9304504394531	3	509.248074	1524.72239	-0.77109	-0.00039268	-0.66331	-0.00033779	-1.4344	-0.00073046	509.2479082769043	32.342	0.61238	33.079	32.704	33.317	0.73692					22	11	3	0	0	0	0.99847	1	11588	11588		5.0475	5.0475	1	4988100			8861	10806	6319	6370	8633	8633					-0.0189803634909822
EEFYNQTW	8	Unmodified	_EEFYNQTW_					0	0	0		ENSG00000117394|ENST00000426263|SLC2A1	ENSG00000117394|ENST00000426263|SLC2A1	ENSG00000117394|ENST00000426263|SLC2A1	MULTI-MSMS	A375_MHC_IP_R1	1	559.16943359375	2	558.735271	1115.45599	-0.21213	-0.00011852	1.8469	0.0010319	1.6348	0.00091339	558.7368681561611	69.122	0.35567	69.122	68.92	69.275	0					11	6	2	0	0	0	0.77123	1	25122	25122		14.582	2.0501	1	882700			8862	3478	6320	6371	8634	8634					-0.09712003587105755
EEFYNQTW	8	Unmodified	_EEFYNQTW_					0	0	0		ENSG00000117394|ENST00000426263|SLC2A1	ENSG00000117394|ENST00000426263|SLC2A1	ENSG00000117394|ENST00000426263|SLC2A1	MULTI-MATCH	A375_MHC_IP_R2	2		2	558.735271	1115.45599	-0.59475	-0.00033231	2.1378	0.0011945	1.543	0.00086214	558.7365303866709	68.309	0.3052	69.044	68.765	69.07	0.73511	-0.03884	6.6723E-05	NaN	14.582	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	826080			8863	3478	6320	6371							-0.09712003587105755
EEFYQGKQA	9	Unmodified	_EEFYQGKQA_					0	0	0		nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6868286132812	2	550.256371	1098.49819	-0.96667	-0.00053192	0.63625	0.0003501	-0.33042	-0.00018182	550.256075702127	65.722	0.4053	66.461	66.172	66.577	0.73812					14	7	3	0	0	0	0.60917	1	24907	24907		19.257	1.1106	1	1082000			8864	1630	6321	6372	8635	8635					-0.0471202817871017
EEGACFRNL	9	Carbamidomethyl (C)	_EEGAC(Carbamidomethyl (C))FRNL_	EEGAC(1)FRNL		EEGAC(48)FRNL		0	1	0			REV__ENSG00000101974|ENST00000682941|ATP11C	REV__ENSG00000101974|ENST00000682941|ATP11C	MULTI-MSMS	A375_MHC_IP_R2	2	548.6498413085938	2	548.248023	1094.48149	-1.0141	-0.00055599	1.4926	0.00081833	0.4785	0.00026234	548.2488232176762	39.066	1.1211	39.84	38.997	40.118	0.77451					33	21	2	0	0	0	0.11296	1	14269	14269		48.346	10.195	1	12152000	+		8865	17195	6322	6373	8636	8636	72				-0.061968523363248096
EEGAQTGASFS	11	Unmodified	_EEGAQTGASFS_					0	0	0			REV__nc|ENSG00000088812|O75882-3|ATRN	REV__nc|ENSG00000088812|O75882-3|ATRN	MULTI-MSMS	A375_MHC_IP_R1	1	543.1334838867188	2	542.233093	1082.45163	-0.8093	-0.00043883	2.0123	0.0010911	1.203	0.00065231	542.7345093274937	41.779	0.71511	41.779	41.317	42.032	0					27	13	3	0	0	0	0.66366	1	14471	14471		18.373	3.5348	1	1575400	+		8866	16890	6323	6374	8637	8637					-0.08629512800644079
EEGDCSDDSW	10	Unmodified	_EEGDCSDDSW_					0	0	0			REV__nc|ENSG00000160299|O95613-2|PCNT	REV__nc|ENSG00000160299|O95613-2|PCNT	MULTI-MSMS	A375_MHC_IP_R2	2	571.703857421875	2	571.682575	1141.3506	-0.16772	-9.588E-05	-0.32123	-0.00018364	-0.48895	-0.00027952	572.186399898837	68.458	0.20224	69.193	69.07	69.272	0.73511					5	3	2	0	0	0	0.70496	1	25915	25915		10.074	10.074	1	1210300	+		8867	20160	6324	6375	8638	8638					-0.21442332565698052
EEGDDDDDDD	10	Unmodified	_EEGDDDDDDD_					0	0	0			REV__nc|ENSG00000091436|Q9NYL2-2|MAP3K20	REV__nc|ENSG00000091436|Q9NYL2-2|MAP3K20	MSMS	A375_MHC_IP_R1	1	570.2040405273438	2	570.160184	1138.30582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.591	1	87.591	87.091	88.091	0								0	0	0	0.15628	1	32142	32142		0.45834	0	1		+		8868	27136	6325	6376	8639	8639					-0.2578048489804132
EEGDRVITY	9	Unmodified	_EEGDRVITY_					0	0	0		nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	MULTI-SECPEP	A375_MHC_IP_R1	1	541.6613159179688	2	541.261653	1080.50875	-0.25075	-0.00013572	-0.24953	-0.00013506	-0.50028	-0.00027078	541.2614855386777	39.008	0.61088	39.008	38.78	39.391	0					24	11	3	0	0	0	0.030244	1	13289	13289		107.1	39.019	1	19924000			8869	5114	6326	6377	8640	8640					-0.028280455242793323
EEGDRVITY	9	Unmodified	_EEGDRVITY_					0	0	0		nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	MULTI-SECPEP	A375_MHC_IP_R2	2	541.6612548828125	2	541.261653	1080.50875	-1.1837	-0.00064071	0.11511	6.2305E-05	-1.0686	-0.0005784	541.261769313536	38.268	0.6102	39.043	38.791	39.401	0.77451					25	11	3	0	0	0	0.053555	1	14062	14062		90.135	22.054	1	14854000			8870	5114	6326	6377	8641	8641					-0.028280455242793323
EEGERLAWEHL	11	Unmodified	_EEGERLAWEHL_					0	0	0			REV__ENSG00000197172|ENST00000329342|MAGEA6	REV__ENSG00000197172|ENST00000329342|MAGEA6	MULTI-MSMS	A375_MHC_IP_R1	1	457.1610412597656	3	456.889603	1367.64698	-0.066485	-3.0376E-05	-0.25697	-0.00011741	-0.32345	-0.00014778	456.889428161712	71.44	0.70693	71.44	71.159	71.866	0					28	13	3	0	0	0	0.73016	1	25927	25927		4.4062	0	1	8229800	+		8871	22268	6327	6378	8642	8642					-0.02213922275814184
EEGFLELIN	9	Unmodified	_EEGFLELIN_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-SECPEP	A375_MHC_IP_R2	2	1062.7978515625	1	1063.53062	1062.52334	0.24371	0.0002592	0.85855	0.00091309	1.1023	0.0011723	1063.533060992013	115.83	0.35692	116.52	116.29	116.64	0.68999					10	6	3	0	0	0	0.58271	1	43710	43710		26.884	14.352	1	9939700			8872	9182	6328	6379	8643	8643					-0.005419733761300449
EEGGDWRAAS	10	Unmodified	_EEGGDWRAAS_					0	0	0		ENST00000217246.8_1_20:13976200-13976362:+|nuORF	ENST00000217246.8_1_20:13976200-13976362:+|nuORF	ENST00000217246.8_1_20:13976200-13976362:+|nuORF	MSMS	A375_MHC_IP_R2	2	539.1534423828125	2	539.233427	1076.4523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.074	1	48.835	48.335	49.335	0.76128								0	0	0	0.15158	1	18045	18045		14.838	1.3304	1				8873	10101	6329	6380	8644	8644					-0.08286673360976238
EEGGEDQFPI	10	Unmodified	_EEGGEDQFPI_					0	0	0			REV__ENSG00000152284|ENST00000282111|TCF7L1	REV__ENSG00000152284|ENST00000282111|TCF7L1	MSMS	A375_MHC_IP_R1	1	560.6746826171875	2	560.743293	1119.47203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.864	1	44.864	44.364	45.364	0								0	0	0	0.15105	1	15672	15672		15.847	1.0089	1		+		8874	19800	6330	6381	8645	8645					-0.08292342140839537
EEGGSQFAPSY	11	Unmodified	_EEGGSQFAPSY_					0	0	0			REV__ENSG00000160111|ENST00000443236|CPAMD8	REV__ENSG00000160111|ENST00000443236|CPAMD8	MULTI-MSMS	A375_MHC_IP_R2	2	587.1505737304688	2	586.248743	1170.48293	-0.43414	-0.00025451	0.44251	0.00025942	0.0083717	4.9079E-06	586.2486498336999	87.237	0.50558	87.97	87.712	88.218	0.733					19	9	3	0	0	0	0.73016	1	33192	33192		8.7454	3.0136	1	2970700	+		8875	20146	6331	6382	8646	8646					-0.09548939766546027
EEGGYFCGTAE	11	Unmodified	_EEGGYFCGTAE_					0	0	0		TGS1|p.S68F|1|0.28|ENSG00000137574|chr8:55785755-55785755|C/T|missense_variant	TGS1|p.S68F|1|0.28|ENSG00000137574|chr8:55785755-55785755|C/T|missense_variant	TGS1|p.S68F|1|0.28|ENSG00000137574|chr8:55785755-55785755|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	388.1675109863281	3	388.150095	1161.42845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.866	1	70.866	70.366	71.366	0								0	0	0	0.16337	1	25737	25737		0.40827	0	1				8876	29334	6332	6383	8647	8647					-0.14580274909644686
EEGHIGVYY	9	Unmodified	_EEGHIGVYY_					0	0	0		ENST00000519872.1_1_8:37594193-37598024:+|nuORF;nc|ENSG00000147475|O94905-2|ERLIN2;nc|ENSG00000147475|O94905-3|ERLIN2;ENSG00000147475|ENST00000519638|ERLIN2	ENST00000519872.1_1_8:37594193-37598024:+|nuORF	ENST00000519872.1_1_8:37594193-37598024:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	533.6822509765625	2	533.745639	1065.47673	-0.67092	-0.0003581	1.2093	0.00064545	0.53836	0.00028735	533.7464405503109	50.342	0.81934	50.342	49.793	50.613	0					32	15	3	0	0	0	0.5339	1	17914	17914		18.135	4.6271	1	6368600			8877	5686	6333	6384	8648	8648					-0.053394132074117806
EEGHIGVYY	9	Unmodified	_EEGHIGVYY_					0	0	0		ENST00000519872.1_1_8:37594193-37598024:+|nuORF;nc|ENSG00000147475|O94905-2|ERLIN2;nc|ENSG00000147475|O94905-3|ERLIN2;ENSG00000147475|ENST00000519638|ERLIN2	ENST00000519872.1_1_8:37594193-37598024:+|nuORF	ENST00000519872.1_1_8:37594193-37598024:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1455688476562	2	533.745639	1065.47673	-1.0474	-0.00055905	0.70717	0.00037745	-0.34025	-0.0001816	533.7461166421782	49.58	0.6078	50.338	50.046	50.653	0.75737					24	11	3	0	0	0	0.054184	1	18633	18633		81.864	54.98	1	5302900			8878	5686	6333	6384	8649	8649					-0.053394132074117806
EEGHRYHPPWR	11	Unmodified	_EEGHRYHPPWR_					0	0	0			REV__ENST00000274629.8_1_5:169805486-169810683:-|nuORF	REV__ENST00000274629.8_1_5:169805486-169810683:-|nuORF	MSMS	A375_MHC_IP_R1	1	488.4693603515625	3	488.569086	1462.68543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.237	1	47.237	46.737	47.737	0								0	0	0	0.16269	1	16610	16610		4.7159	1.8726	1		+		8879	23292	6334	6385	8650	8650					-0.027405718506543053
EEGHRYHPPWR	11	Unmodified	_EEGHRYHPPWR_					0	0	0			REV__ENST00000274629.8_1_5:169805486-169810683:-|nuORF	REV__ENST00000274629.8_1_5:169805486-169810683:-|nuORF	MSMS	A375_MHC_IP_R2	2	488.4691162109375	3	488.569086	1462.68543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.587	1	47.352	46.852	47.852	0.76519								0	0	0	0.16269	1	17450	17450		4.7159	1.8726	1		+		8880	23292	6334	6385	8651	8651					-0.027405718506543053
EEGKCEQGI	9	Unmodified	_EEGKCEQGI_					0	0	0		ENST00000525427.1_1_11:118484551-118485441:+|nuORF	ENST00000525427.1_1_11:118484551-118485441:+|nuORF	ENST00000525427.1_1_11:118484551-118485441:+|nuORF	MSMS	A375_MHC_IP_R2	2	496.6577453613281	2	496.721307	991.42806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.855	1	48.616	48.116	49.116	0.76128								0	0	0	0.15486	1	17956	17956		13.508	0	1				8881	13069	6335	6386	8652	8652					-0.0679964983884247
EEGKGKHRVAV	11	Unmodified	_EEGKGKHRVAV_					0	0	0		ENST00000468255.5_1_6:31636946-31637027:+|nuORF	ENST00000468255.5_1_6:31636946-31637027:+|nuORF	ENST00000468255.5_1_6:31636946-31637027:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	604.68505859375	2	605.338561	1208.66257	-0.77953	-0.00047188	2.1707	0.001314	1.3912	0.00084212	605.3398739693775	22.815	0.20419	23.445	23.317	23.521	0.63014					5	3	2	0	0	0	0.99332	1	7285	7285		8.7454	2.5396	1	925560			8882	12300	6336	6387	8653	8653					0.06658409031888368
EEGKQPTTWG	10	Unmodified	_EEGKQPTTWG_					0	0	0		ENST00000490180.2_1_14:65198440-65203695:+|nuORF	ENST00000490180.2_1_14:65198440-65203695:+|nuORF	ENST00000490180.2_1_14:65198440-65203695:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	567.1666259765625	2	566.767103	1131.51965	-0.38929	-0.00022064	-0.44135	-0.00025014	-0.83064	-0.00047078	566.7668163610209	81.369	0.65784	81.369	81.049	81.707	0					25	12	3	0	0	0	0.6774	1	29729	29729		34.402	5.3201	1	4508700			8883	12645	6337	6388	8654	8654					-0.040846431500312974
EEGKQPTTWG	10	Unmodified	_EEGKQPTTWG_					0	0	0		ENST00000490180.2_1_14:65198440-65203695:+|nuORF	ENST00000490180.2_1_14:65198440-65203695:+|nuORF	ENST00000490180.2_1_14:65198440-65203695:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	567.1358642578125	2	566.767103	1131.51965	-0.45027	-0.0002552	-0.93312	-0.00052886	-1.3834	-0.00078406	566.7665839586634	80.682	0.91839	81.427	80.961	81.879	0.74473					30	17	3	0	0	0	0.63381	1	30610	30610		38.176	3.7738	1	4037900			8884	12645	6337	6388	8655	8655					-0.040846431500312974
EEGLEPGQLPV	11	Unmodified	_EEGLEPGQLPV_					0	0	0		ENST00000567481.1_2_16:75182955-75200774:+|nuORF	ENST00000567481.1_2_16:75182955-75200774:+|nuORF	ENST00000567481.1_2_16:75182955-75200774:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1167.2703857421875	1	1167.58919	1166.58192	0.21783	0.00025433	-3.018	-0.0035238	-2.8002	-0.0032694	1168.5879350226737	119.5	0.25307	120.04	119.94	120.19	0.5321					5	4	2	0	0	0	0.99606	1	45552	45552		6.2058	1.4498	1	7294100			8885	13572	6338	6389	8656	8656					0.005290831983302269
EEGLGAGRW	9	Unmodified	_EEGLGAGRW_					0	0	0		nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1;nc|ENSG00000084112|Q8WYL5-4|SSH1;ENSG00000084112|ENST00000326495|SSH1	nc|ENSG00000084112|Q8WYL5-2|SSH1	nc|ENSG00000084112|Q8WYL5-2|SSH1	MULTI-SECPEP	A375_MHC_IP_R1	1	488.1379089355469	2	487.738148	973.461744	-0.29796	-0.00014533	-0.026039	-1.27E-05	-0.324	-0.00015803	487.73809146588536	47.313	0.56481	47.313	46.952	47.517	0					14	10	2	0	0	0	0.28216	1	16637	16637		41.84	13.353	1	1685800			8886	1795	6339	6390	8657	8657					-0.026048602847595248
EEGLSRPEL	9	Unmodified	_EEGLSRPEL_					0	0	0			REV__ENST00000566735.1_1_16:19125342-19127388:+|nuORF	REV__ENST00000566735.1_1_16:19125342-19127388:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	514.6871337890625	2	515.264196	1028.51384	-0.56213	-0.00028965	0.71695	0.00036942	0.15481	7.977E-05	515.2647709940799	59.067	1.9823	59.067	58.075	60.057	0					70	38	3	0	0	0	0.47368	1	21610	21610		34.102	12.356	1	11324000	+		8887	22580	6340	6391	8658	8658					0.0007225833833217621
EEGLVNNKY	9	Unmodified	_EEGLVNNKY_					0	0	0		ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENSG00000134987|ENST00000513710|WDR36	ENSG00000134987|ENST00000513710|WDR36	MULTI-MSMS	A375_MHC_IP_R1	1	533.6639404296875	2	533.264196	1064.51384	-0.85449	-0.00045567	0.083906	4.4744E-05	-0.77058	-0.00041092	533.2642657154272	30.882	0.70993	30.882	30.653	31.363	0					45	13	5	0	0	0	0.0011619	1	9837	9837		152.41	91.055	1	46961000			8888	4633	6341	6392	8659	8659					-0.015837416616705013
EEGLVNNKY	9	Unmodified	_EEGLVNNKY_					0	0	0		ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENSG00000134987|ENST00000513710|WDR36	ENSG00000134987|ENST00000513710|WDR36	MULTI-MSMS	A375_MHC_IP_R2	2	533.663818359375	2	533.264196	1064.51384	-0.78638	-0.00041935	0.062369	3.3259E-05	-0.72401	-0.00038609	533.264251845491	30.272	0.80885	30.99	30.708	31.517	0.71857					52	15	5	0	0	0	0.010171	1	10588	10588		96.111	43.843	1	41243000			8889	4633	6341	6392	8660	8660					-0.015837416616705013
EEGMVFTEY	9	Unmodified	_EEGMVFTEY_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	A375_MHC_IP_R1	1	1105.2349853515625	1	1104.4554	1103.44813	0.34932	0.0003858	0.10095	0.00011149	0.45026	0.0004973	1105.4581268978577	92.668	0.45816	92.668	92.515	92.973	0					13	8	2	0	0	0	0.0099443	1	34046	34046		120.45	80.493	1	2000000			8890	5945	6342	6393	8661	8661					-0.09945898898877203
EEGMVFTEY	9	Unmodified	_EEGMVFTEY_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-MATCH	A375_MHC_IP_R2	2		1	1104.4554	1103.44813	0.18845	0.00020814	0.030373	3.3546E-05	0.21883	0.00024168	1104.455089938302	92.071	0.40291	92.81	92.635	93.038	0.73902	0.071284	-2.0837E-05	NaN	120.45	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1466200			8891	5945	6342	6393							-0.09945898898877203
EEGNIEHAF	9	Unmodified	_EEGNIEHAF_					0	0	0		nc|ENSG00000124356|O95630-2|STAMBP;ENSG00000124356|ENST00000394070|STAMBP	nc|ENSG00000124356|O95630-2|STAMBP	nc|ENSG00000124356|O95630-2|STAMBP	MULTI-MSMS	A375_MHC_IP_R1	1	523.6741333007812	2	523.232896	1044.45124	-0.86714	-0.00045371	-0.0098476	-5.1526E-06	-0.87698	-0.00045887	523.2328582667382	41.433	0.66238	41.433	41.063	41.725	0					33	12	4	0	0	0	0.026268	1	14310	14310		78.149	45.844	1	13717000			8892	3894	6343	6394	8662	8662					-0.06920887729870628
EEGNIEHAF	9	Unmodified	_EEGNIEHAF_					0	0	0		nc|ENSG00000124356|O95630-2|STAMBP;ENSG00000124356|ENST00000394070|STAMBP	nc|ENSG00000124356|O95630-2|STAMBP	nc|ENSG00000124356|O95630-2|STAMBP	MULTI-SECPEP	A375_MHC_IP_R2	2	523.6326293945312	2	523.232896	1044.45124	-0.69973	-0.00036612	0.25223	0.00013197	-0.44751	-0.00023415	523.2329991450794	40.636	0.60999	41.41	41.082	41.692	0.77451					35	11	4	0	0	0	0.064992	1	15034	15034		78.149	55.001	1	14292000			8893	3894	6343	6394	8663	8663					-0.06920887729870628
EEGNPLLKHY	10	Unmodified	_EEGNPLLKHY_					0	0	0		ENSG00000105281|ENST00000542575|SLC1A5;nc|ENSG00000105281|Q15758-3|SLC1A5;nc|ENSG00000105281|Q15758-2|SLC1A5	ENSG00000105281|ENST00000542575|SLC1A5	ENSG00000105281|ENST00000542575|SLC1A5	MULTI-SECPEP	A375_MHC_IP_R2	2	400.9400939941406	3	400.540022	1198.59824	-0.50397	-0.00020186	0.087294	3.4965E-05	-0.41667	-0.00016689	400.5400552784536	36.716	0.45825	37.487	37.258	37.716	0.7709					14	8	2	0	0	0	0.68214	1	13387	13387		37.771	19.05	1	3749600			8894	2584	6344	6395	8664	8664					0.006882091551233316
EEGNPRLWY	9	Unmodified	_EEGNPRLWY_					0	0	0		ENSG00000132824|ENST00000342374|SERINC3;nc|ENSG00000132824|Q13530-2|SERINC3	ENSG00000132824|ENST00000342374|SERINC3	ENSG00000132824|ENST00000342374|SERINC3	MULTI-MSMS	A375_MHC_IP_R1	1	582.6778564453125	2	582.277638	1162.54072	-0.20385	-0.0001187	-0.54529	-0.00031751	-0.74914	-0.00043621	582.2770609886444	63.694	0.96682	63.694	63.326	64.292	0					46	18	4	0	0	0	0.0078915	2	22957	22957;23041		168.66	120.31	1	13839000			8895	4454	6345	6396	8665;8666	8665					-0.03404633050490702
EEGNPRLWY	9	Unmodified	_EEGNPRLWY_					0	0	0		ENSG00000132824|ENST00000342374|SERINC3;nc|ENSG00000132824|Q13530-2|SERINC3	ENSG00000132824|ENST00000342374|SERINC3	ENSG00000132824|ENST00000342374|SERINC3	MULTI-MSMS	A375_MHC_IP_R2	2	583.1782836914062	2	582.277638	1162.54072	-0.33928	-0.00019756	-0.60453	-0.000352	-0.94381	-0.00054956	582.2772611447781	62.962	1.0134	63.705	63.383	64.397	0.74263					47	19	3	0	0	0	0.0094639	2	23816	23816;23846		106.94	66.983	1	15351000			8896	4454	6345	6396	8667;8668	8667					-0.03404633050490702
EEGNQFVAY	9	Unmodified	_EEGNQFVAY_					0	0	0		nc|ENSG00000006712|Q8N7H5-3|PAF1;nc|ENSG00000006712|Q8N7H5-2|PAF1;ENSG00000006712|ENST00000221265|PAF1	nc|ENSG00000006712|Q8N7H5-3|PAF1	nc|ENSG00000006712|Q8N7H5-3|PAF1	MULTI-SECPEP	A375_MHC_IP_R1	1	529.1348266601562	2	528.735271	1055.45599	-0.58124	-0.00030732	0.02759	1.4588E-05	-0.55365	-0.00029274	528.7351586627744	64.419	0.559	64.419	64.292	64.851	0					16	10	2	0	0	0	0.10103	1	23341	23341		71.922	51.469	1	1761800			8897	926	6346	6397	8669	8669					-0.06952003587093714
EEGNQFVAY	9	Unmodified	_EEGNQFVAY_					0	0	0		nc|ENSG00000006712|Q8N7H5-3|PAF1;nc|ENSG00000006712|Q8N7H5-2|PAF1;ENSG00000006712|ENST00000221265|PAF1	nc|ENSG00000006712|Q8N7H5-3|PAF1	nc|ENSG00000006712|Q8N7H5-3|PAF1	MULTI-MSMS	A375_MHC_IP_R2	2	529.1353149414062	2	528.735271	1055.45599	-0.46707	-0.00024695	0.11526	6.0941E-05	-0.35181	-0.00018601	528.7353150472642	63.883	0.60995	64.623	64.394	65.004	0.74022					18	11	2	0	0	0	0.040308	1	24258	24258		68.081	35.775	1	1311600			8898	926	6346	6397	8670	8670					-0.06952003587093714
EEGNWFWS	8	Unmodified	_EEGNWFWS_					0	0	0			REV__ENSG00000198908|ENST00000457056|GPRASP3	REV__ENSG00000198908|ENST00000457056|GPRASP3	MULTI-MSMS	A375_MHC_IP_R2	2	527.6820678710938	2	527.716882	1053.41921	-1.1521	-0.00060801	-0.30677	-0.00016189	-1.4589	-0.0007699	527.7165904135231	37.021	0.35472	37.792	37.665	38.02	0.7709					10	6	2	0	0	0	0.77624	1	13600	13600		8.5933	0.68312	1	1931800	+		8899	22443	6347	6398	8671	8671					-0.10536255413012441
EEGPDERSLY	10	Unmodified	_EEGPDERSLY_					0	0	0		RPRM|p.G44E|1|0.21|ENSG00000177519|chr2:153478435-153478435|C/T|missense_variant	RPRM|p.G44E|1|0.21|ENSG00000177519|chr2:153478435-153478435|C/T|missense_variant	RPRM|p.G44E|1|0.21|ENSG00000177519|chr2:153478435-153478435|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	598.1669311523438	2	597.7673	1193.52005	-0.90504	-0.000541	0.19689	0.0001177	-0.70814	-0.0004233	597.7673369848499	24.521	0.7611	25.164	24.958	25.719	0.64368					27	14	3	0	0	0	0.70496	1	8087	8087		10.074	1.3285	1	7628100			8900	29094	6348	6399	8672	8672					-0.06897268220791375
EEGPDERSLY	10	Unmodified	_EEGPDERSLY_					0	0	0		RPRM|p.G44E|1|0.21|ENSG00000177519|chr2:153478435-153478435|C/T|missense_variant	RPRM|p.G44E|1|0.21|ENSG00000177519|chr2:153478435-153478435|C/T|missense_variant	RPRM|p.G44E|1|0.21|ENSG00000177519|chr2:153478435-153478435|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	597.7673	1193.52005	-0.39224	-0.00023447	-0.16609	-9.9283E-05	-0.55833	-0.00033375	597.7671557193693	24.99	0.81161	24.99	24.852	25.664	0	-0.086957	-0.00027004	NaN	10.074	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12656000			8901	29094	6348	6399							-0.06897268220791375
EEGPDVLRW	9	Unmodified	_EEGPDVLRW_					0	0	0		ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A;SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant;ENSG00000101310|ENST00000650089|SEC23B	ENSG00000100934|ENST00000307712|SEC23A;SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	551.171630859375	2	550.772188	1099.52982	-0.55916	-0.00030797	0.12517	6.8942E-05	-0.43398	-0.00023903	550.7722283694777	81.374	1.2163	81.374	80.897	82.113	0					66	22	5	0	0	0	0.077986	1	29664	29664		99.755	69.119	1	55850000			8902	2280;2234	6349	6400	8673	8673					-0.015960354247681607
EEGPDVLRW	9	Unmodified	_EEGPDVLRW_					0	0	0		ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A;SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant;ENSG00000101310|ENST00000650089|SEC23B	ENSG00000100934|ENST00000307712|SEC23A;SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	551.7345581054688	2	550.772188	1099.52982	-0.83902	-0.00046211	0.046277	2.5488E-05	-0.79274	-0.00043662	550.7722085323826	80.677	1.1693	81.422	81.011	82.18	0.74473					63	22	4	0	0	0	0.018261	1	30622	30622		85.642	56.56	1	49683000			8903	2280;2234	6349	6400	8674	8674					-0.015960354247681607
EEGPIIKEI	9	Unmodified	_EEGPIIKEI_					0	0	0		ENSG00000132694|ENST00000368194|ARHGEF11;nc|ENSG00000132694|O15085|ARHGEF11;ENST00000461678.1_1_1:156915777-156917159:-|nuORF	ENSG00000132694|ENST00000368194|ARHGEF11	ENSG00000132694|ENST00000368194|ARHGEF11	MULTI-SECPEP	A375_MHC_IP_R1	1	514.172607421875	2	514.28714	1026.55973	-0.50048	-0.00025739	0.33257	0.00017104	-0.16791	-8.6352E-05	514.287195784632	60.134	1.2722	60.134	59.548	60.821	0					65	24	4	0	0	0	0.011308	1	21632	21632		128.93	49.336	1	35248000			8904	4442	6350	6401	8675	8675					0.04750903520562133
EEGPIIKEI	9	Unmodified	_EEGPIIKEI_					0	0	0		ENSG00000132694|ENST00000368194|ARHGEF11;nc|ENSG00000132694|O15085|ARHGEF11;ENST00000461678.1_1_1:156915777-156917159:-|nuORF	ENSG00000132694|ENST00000368194|ARHGEF11	ENSG00000132694|ENST00000368194|ARHGEF11	MULTI-MSMS	A375_MHC_IP_R2	2	514.92431640625	2	514.28714	1026.55973	-1.1672	-0.00060026	-0.044887	-2.3085E-05	-1.2121	-0.00062335	514.2870233389692	59.248	1.1146	59.995	59.438	60.553	0.74714					49	21	4	0	0	0	0.017727	1	22372	22372		86.332	28.61	1	30524000			8905	4442	6350	6401	8676	8676					0.04750903520562133
EEGPPSTAI	9	Unmodified	_EEGPPSTAI_					0	0	0		nc|ENSG00000166963|P78559-2|MAP1A;ENSG00000166963|ENST00000300231|MAP1A;MAP1A|p.G575R|1|0.3|ENSG00000166963|chr15:43523196-43523196|G/A|missense_variant	nc|ENSG00000166963|P78559-2|MAP1A	nc|ENSG00000166963|P78559-2|MAP1A	MULTI-SECPEP	A375_MHC_IP_R1	1	900.8306884765625	1	900.430903	899.423627	0.39743	0.00035786	-0.17617	-0.00015863	0.22125	0.00019922	900.4303389532646	44.819	0.60837	44.819	44.575	45.183	0					23	11	3	0	0	0	0.047455	1	15659	15659		88.904	42.883	1	4181100			8906	7142	6351	6402	8677	8677					-0.030107909901062158
EEGPPSTAI	9	Unmodified	_EEGPPSTAI_					0	0	0		nc|ENSG00000166963|P78559-2|MAP1A;ENSG00000166963|ENST00000300231|MAP1A;MAP1A|p.G575R|1|0.3|ENSG00000166963|chr15:43523196-43523196|G/A|missense_variant	nc|ENSG00000166963|P78559-2|MAP1A	nc|ENSG00000166963|P78559-2|MAP1A	MULTI-SECPEP	A375_MHC_IP_R2	2	900.8294677734375	1	900.430903	899.423627	-0.30481	-0.00027446	0.047196	4.2496E-05	-0.25762	-0.00023197	900.4304832742067	44.14	0.70864	44.909	44.631	45.34	0.7691					22	13	2	0	0	0	0.05755	1	16514	16514		81.613	35.592	1	4722300			8907	7142	6351	6402	8678	8678					-0.030107909901062158
EEGPSSVRF	9	Unmodified	_EEGPSSVRF_					0	0	0		nc|ENSG00000188811|Q5JS37-2|NHLRC3;ENSG00000188811|ENST00000379600|NHLRC3	nc|ENSG00000188811|Q5JS37-2|NHLRC3	nc|ENSG00000188811|Q5JS37-2|NHLRC3	MULTI-MSMS	A375_MHC_IP_R1	1	504.6572265625	2	504.243264	1006.47197	-0.56538	-0.00028509	0.14487	7.3052E-05	-0.42051	-0.00021204	504.24330463973723	41.088	0.80986	41.088	40.609	41.419	0					26	15	2	0	0	0	0.31062	1	14249	14249		29.841	10.584	1	11434000			8908	8939	6352	6403	8679	8679					-0.031002973501813358
EEGPSSVRF	9	Unmodified	_EEGPSSVRF_					0	0	0		nc|ENSG00000188811|Q5JS37-2|NHLRC3;ENSG00000188811|ENST00000379600|NHLRC3	nc|ENSG00000188811|Q5JS37-2|NHLRC3	nc|ENSG00000188811|Q5JS37-2|NHLRC3	MULTI-MSMS	A375_MHC_IP_R2	2	504.6428527832031	2	504.243264	1006.47197	-0.74334	-0.00037483	-0.072126	-3.6369E-05	-0.81547	-0.00041119	504.2432334016883	40.384	0.76172	41.158	40.676	41.438	0.77451					21	14	2	0	0	0	0.04447	1	14920	14920		66.457	18.111	1	8983400			8909	8939	6352	6403	8680	8680					-0.031002973501813358
EEGQKEQY	8	Unmodified	_EEGQKEQY_					0	0	0			REV__nc|ENSG00000179950|Q9UHX1-4|PUF60	REV__nc|ENSG00000179950|Q9UHX1-4|PUF60	MULTI-MSMS	A375_MHC_IP_R1	1	505.6814270019531	2	505.724904	1009.43525	-0.72499	-0.00036664	-0.29931	-0.00015137	-1.0243	-0.00051801	505.7247872521518	41.565	0.66563	41.565	41.266	41.932	0					18	12	2	0	0	0	0.7338	1	14270	14270		24.674	1.5255	1	3840700	+		8910	21591	6353	6404	8681	8681					-0.069085939667616
EEGQKVFKE	9	Unmodified	_EEGQKVFKE_					0	0	0			REV__nc|ENSG00000119392|Q53GS7-2|GLE1	REV__nc|ENSG00000119392|Q53GS7-2|GLE1	MSMS	A375_MHC_IP_R2	2	547.2059936523438	2	547.279846	1092.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.051	1	27.729	27.229	28.229	0.67857								0	0	0	0.14677	1	9203	9203		26.884	9.9414	1		+		8911	18068	6354	6405	8682	8682					0.002568313724395921
EEGQNEGL	8	Unmodified	_EEGQNEGL_					0	0	0			REV__ENST00000479084.1_1_1:156264456-156264780:-|nuORF	REV__ENST00000479084.1_1_1:156264456-156264780:-|nuORF	MSMS	A375_MHC_IP_R2	2	438.1528015136719	2	438.190697	874.36684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.928	1	71.662	71.162	72.162	0.73421								0	0	0	0.16876	1	26896	26896		10.183	0	1		+		8912	25227	6355	6406	8683	8683					-0.0753683854660494
EEGQRYIQF	9	Unmodified	_EEGQRYIQF_					0	0	0		ENSG00000163960|ENST00000296328|UBXN7	ENSG00000163960|ENST00000296328|UBXN7	ENSG00000163960|ENST00000296328|UBXN7	MULTI-MSMS	A375_MHC_IP_R1	1	585.7434692382812	2	585.28292	1168.55129	-0.33377	-0.00019535	1.5671	0.00091722	1.2334	0.00072188	585.283464525474	58.632	0.45658	58.632	58.43	58.887	0					15	8	3	0	0	0	0.054426	1	21067	21067		62.573	28.47	1	1031700			8913	6754	6356	6407	8684	8684					-0.02624650396069228
EEGRIITKW	9	Unmodified	_EEGRIITKW_					0	0	0		ENST00000230480.10_1_6:43742087-43745211:+|nuORF	ENST00000230480.10_1_6:43742087-43745211:+|nuORF	ENST00000230480.10_1_6:43742087-43745211:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	378.276611328125	3	377.876746	1130.60841	0.015206	5.7461E-06	0.29409	0.00011113	0.30929	0.00011688	377.8768178863858	41.614	0.51136	41.614	41.317	41.828	0					27	9	4	0	0	0	0.47206	1	14374	14374		39.213	24.256	1	14542000			8914	10141	6357	6408	8685	8685					0.04832816880320934
EEGRIITKW	9	Unmodified	_EEGRIITKW_					0	0	0		ENST00000230480.10_1_6:43742087-43745211:+|nuORF	ENST00000230480.10_1_6:43742087-43745211:+|nuORF	ENST00000230480.10_1_6:43742087-43745211:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	566.7109375	2	566.31148	1130.60841	-0.70641	-0.00040005	0.45237	0.00025618	-0.25403	-0.00014386	566.3117029854685	41.596	0.40896	41.596	41.419	41.828	0					16	7	3	0	0	0	0.28318	1	14381	14381		59.368	36.632	1	5136500			8915	10141	6357	6408	8686	8686					0.04832816880320934
EEGRIITKW	9	Unmodified	_EEGRIITKW_					0	0	0		ENST00000230480.10_1_6:43742087-43745211:+|nuORF	ENST00000230480.10_1_6:43742087-43745211:+|nuORF	ENST00000230480.10_1_6:43742087-43745211:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	378.2768249511719	3	377.876746	1130.60841	-0.033306	-1.2585E-05	-0.11804	-4.4606E-05	-0.15135	-5.7191E-05	377.87673745277345	40.741	0.6611	41.516	41.285	41.946	0.77451					34	12	4	0	0	0	0.12771	1	15097	15097		49.527	35.122	1	19630000			8916	10141	6357	6408	8687	8687					0.04832816880320934
EEGSGSSALFW	11	Unmodified	_EEGSGSSALFW_					0	0	0		ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000021762|ENST00000263650|OSBPL5	ENST00000534491.5_1_11:3114755-3187956:-|nuORF	ENST00000534491.5_1_11:3114755-3187956:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	584.6767578125	2	585.259111	1168.50367	-0.63794	-0.00037336	-0.16232	-9.4999E-05	-0.80026	-0.00046836	585.2590025940372	62.278	0.50674	63.021	62.724	63.23	0.74263					14	9	2	0	0	0	0.95991	1	23582	23582		18.146	7.3224	1	1581300			8917	1065	6358	6409	8688	8688					-0.07384349386916256
EEGSITVRQF	10	Unmodified	_EEGSITVRQF_					0	0	0			REV__ENST00000525415.1_1_1:110168821-110169689:+|nuORF	REV__ENST00000525415.1_1_1:110168821-110169689:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	388.9488525390625	3	389.199777	1164.5775	0.062572	2.4353E-05	0.26064	0.00010144	0.32321	0.00012579	389.19972378952826	32.23	0.46066	32.23	31.973	32.434	0					20	8	3	0	0	0	0.92957	1	10295	10295		1.5923	0	1	1856400	+		8918	17955	6359	6410	8689	8689					0.0017961877540528803
EEGTPLTLY	9	Unmodified	_EEGTPLTLY_					0	0	0		ENST00000477976.5_1_1:880076-889593:-|nuORF;ENST00000483767.5_1_1:880076-882054:-|nuORF;ENSG00000188976|ENST00000327044|NOC2L	ENST00000477976.5_1_1:880076-889593:-|nuORF;ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	MULTI-MSMS	A375_MHC_IP_R2	2	1023.994873046875	1	1022.50407	1021.49679	0.13324	0.00013624	-0.19703	-0.00020146	-0.06379	-6.5226E-05	1022.5038355406615	90.846	0.65912	91.581	91.311	91.97	0.7345					26	12	3	0	0	0	0.077132	1	34542	34542		54.774	12.679	1	6866000			8919	12454;8948	6360	6411	8690	8690					-0.013096622674765968
EEGTPLTLY	9	Unmodified	_EEGTPLTLY_					0	0	0		ENST00000477976.5_1_1:880076-889593:-|nuORF;ENST00000483767.5_1_1:880076-882054:-|nuORF;ENSG00000188976|ENST00000327044|NOC2L	ENST00000477976.5_1_1:880076-889593:-|nuORF;ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	MULTI-MATCH	A375_MHC_IP_R1	1		1	1022.50407	1021.49679	0.12428	0.00012708	-0.44379	-0.00045378	-0.31951	-0.0003267	1022.503547227319	91.529	0.65704	91.529	91.249	91.906	0	-0.025807	-0.00010379	NaN	54.774	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6828500			8920	12454;8948	6360	6411							-0.013096622674765968
EEGTSEPVRI	10	Unmodified	_EEGTSEPVRI_					0	0	0			REV__nc|ENSG00000136044|Q8NEU8-2|APPL2	REV__nc|ENSG00000136044|Q8NEU8-2|APPL2	MSMS	A375_MHC_IP_R1	1	558.7410278320312	2	558.78021	1115.54587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.325	1	92.325	91.825	92.825	0								0	0	0	0.12703	1	33929	33929		36.127	0.082828	1		+		8921	18911	6361	6412	8691	8691					-0.007283739785179932
EEGTYQKLL	9	Unmodified	_EEGTYQKLL_					0	0	0		ENST00000493555.5_1_1:118439453-118462815:-|nuORF;nc|ENSG00000196505|Q9NXN4-2|GDAP2;ENSG00000196505|ENST00000369443|GDAP2	ENST00000493555.5_1_1:118439453-118462815:-|nuORF	ENST00000493555.5_1_1:118439453-118462815:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	540.18017578125	2	540.782222	1079.54989	-0.61865	-0.00033456	0.70977	0.00038383	0.09112	4.9276E-05	540.7826186554694	52.273	0.86544	52.273	51.93	52.796	0					39	15	4	0	0	0	0.011066	1	18586	18586		103.42	36.076	1	27687000			8922	9051	6362	6413	8692	8692					0.013297155152031337
EEGVLPYGFL	10	Unmodified	_EEGVLPYGFL_					0	0	0			REV__ENSG00000226372|ENST00000441525|DCAF8L1	REV__ENSG00000226372|ENST00000441525|DCAF8L1	MULTI-SECPEP	A375_MHC_IP_R2	2	561.695556640625	2	562.28714	1122.55973	-0.3755	-0.00021114	-2.5213	-0.0014177	-2.8969	-0.0016289	562.2860004040075	43.997	0.70599	44.766	44.228	44.934	0.7691					25	13	3	0	0	0	0.83086	1	16372	16372		21.747	4.304	1	2620800	+		8923	22721	6363	6414	8693	8693					0.0033490352057015116
EEGWEYDTF	9	Unmodified	_EEGWEYDTF_					0	0	0		ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	MSMS	A375_MHC_IP_R2	2	588.1572875976562	2	588.230019	1174.44548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.296	1	34.048	33.548	34.548	0.75225								0	0	0	0.15486	1	11917	11917		12.532	3.1484	1				8924	9841	6364	6415	8694	8694					-0.13476031032200808
EEGWRLYY	8	Unmodified	_EEGWRLYY_					0	0	0			REV__ENST00000423565.5_3_7:134870843-134870903:-|nuORF	REV__ENST00000423565.5_3_7:134870843-134870903:-|nuORF	MSMS	A375_MHC_IP_R2	2	558.1741943359375	2	558.261456	1114.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.151	1	35.915	35.415	36.415	0.76338								0	0	0	0.16876	1	12728	12728		23.148	5.0021	1		+		8925	24616	6365	6416	8695	8695					-0.04431420453488499
EEHCMEEDDCD	11	Unmodified	_EEHCMEEDDCD_					0	0	0			REV__nc|ENSG00000186462|Q9ULW6-2|NAP1L2	REV__nc|ENSG00000186462|Q9ULW6-2|NAP1L2	MSMS	A375_MHC_IP_R2	2	677.7255859375	2	677.697042	1353.37953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.901	1	62.644	62.144	63.144	0.74263								0	0	0	0.16353	1	23463	23463		0.35063	0	1		+		8926	21971	6366	6417	8696	8696					-0.28302299323195257
EEHCMEEVTE	10	Unmodified	_EEHCMEEVTE_					0	0	0			REV__FSD2|p.I309V|1|0.16|ENSG00000186628|chr15:82782836-82782836|T/C|missense_variant	REV__FSD2|p.I309V|1|0.16|ENSG00000186628|chr15:82782836-82782836|T/C|missense_variant	MSMS	A375_MHC_IP_R2	2	618.228271484375	2	618.231378	1234.4482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.32	1	104.08	103.58	104.58	0.76428								0	0	0	0.15207	1	39131	39131		13.906	7.1829	1		+		8927	26654	6367	6418	8697	8697					-0.15964266961168505
EEHEEEDY	8	Unmodified	_EEHEEEDY_					0	0	0			REV__ENSG00000121851|ENST00000369314|POLR3GL	REV__ENSG00000121851|ENST00000369314|POLR3GL	MSMS	A375_MHC_IP_R2	2	540.1552124023438	2	540.193633	1078.37271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.468	1	71.202	70.702	71.702	0.73421								0	0	0	0.16876	1	26714	26714		10.183	0	1		+		8928	18173	6368	6419	8698	8698					-0.16333784825587827
EEHEEYIT	8	Unmodified	_EEHEEYIT_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;TTN|p.L14011*|1|0.26|ENSG00000155657|chr2:178618595-178618595|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R1	1	525.6231079101562	2	525.224736	1048.43492	-0.19773	-0.00010385	1.6667	0.00087541	1.469	0.00077156	525.2233544958082	45.488	0.60552	45.488	45.183	45.789	0					25	11	3	0	0	0	0.75322	1	15921	15921		19.439	4.8573	1	1927100			8929	6151;14694	6369	6420	8699	8699					-0.08736013686620936
EEHFRGQEF	9	Unmodified	_EEHFRGQEF_					0	0	0		ENSG00000116984|ENST00000366577|MTR;nc|ENSG00000116984|Q99707-2|MTR	ENSG00000116984|ENST00000366577|MTR	ENSG00000116984|ENST00000366577|MTR	MULTI-SECPEP	A375_MHC_IP_R1	1	590.164794921875	2	589.764894	1177.51524	-0.48518	-0.00028614	0.1784	0.00010521	-0.30678	-0.00018093	589.7650386156763	28.126	0.45196	28.126	27.887	28.339	0					19	8	3	0	0	0	0.011066	1	8644	8644		125.53	46.801	1	7562700			8930	3448	6370	6421	8700	8700					-0.06642107572906752
EEHFRGQEF	9	Unmodified	_EEHFRGQEF_					0	0	0		ENSG00000116984|ENST00000366577|MTR;nc|ENSG00000116984|Q99707-2|MTR	ENSG00000116984|ENST00000366577|MTR	ENSG00000116984|ENST00000366577|MTR	MULTI-MSMS	A375_MHC_IP_R2	2	590.1646728515625	2	589.764894	1177.51524	-0.49991	-0.00029483	0.22974	0.00013549	-0.27018	-0.00015934	589.765123443679	27.469	0.45614	28.148	27.945	28.401	0.67857					16	8	3	0	0	0	0.0098085	1	9410	9410		114.2	58.025	1	5156700			8931	3448	6370	6421	8701	8701					-0.06642107572906752
EEHFRGQEF	9	Unmodified	_EEHFRGQEF_					0	0	0		ENSG00000116984|ENST00000366577|MTR;nc|ENSG00000116984|Q99707-2|MTR	ENSG00000116984|ENST00000366577|MTR	ENSG00000116984|ENST00000366577|MTR	MULTI-SECPEP	A375_MHC_IP_R2	2	393.9122009277344	3	393.512355	1177.51524	-0.10826	-4.26E-05	0.1383	5.4422E-05	0.030043	1.1822E-05	393.5123931621641	27.494	0.5572	28.173	27.945	28.502	0.67857					30	10	4	0	0	0	0.39388	1	9376	9376		29.841	1.3461	1	21430000			8932	3448	6370	6421	8702	8702					-0.06642107572906752
EEHGPFFLY	9	Unmodified	_EEHGPFFLY_					0	0	0		ENSG00000187003|ENST00000333999|ACTL7A	ENSG00000187003|ENST00000333999|ACTL7A	ENSG00000187003|ENST00000333999|ACTL7A	MULTI-SECPEP	A375_MHC_IP_R2	2	569.1737670898438	2	569.763832	1137.51311	-0.14068	-8.0156E-05	0.44928	0.00025598	0.30859	0.00017583	570.2665235639706	94.023	0.55696	94.768	94.463	95.02	0.74473					13	10	2	0	0	0	0.67221	1	35790	35790		13.508	3.3245	1	834990			8933	8798	6371	6422	8703	8703					-0.05014536310704898
EEHHPGPAE	9	Unmodified	_EEHHPGPAE_					0	0	0		ENST00000527401.5_1_11:45955654-45955798:-|nuORF;ENST00000530587.5_1_11:45955654-45956741:-|nuORF	ENST00000527401.5_1_11:45955654-45955798:-|nuORF	ENST00000527401.5_1_11:45955654-45955798:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.1169738769531	2	501.717413	1001.42027	-0.30143	-0.00015124	-0.0029428	-1.4764E-06	-0.30438	-0.00015271	501.71730145520513	70.913	0.66479	70.913	70.494	71.159	0					29	12	3	0	0	0	0.75466	1	25709	25709		4.3292	4.3292	1	3656200			8934	13100	6372	6423	8704	8704					-0.08038041044096644
EEHIHIQQW	9	Unmodified	_EEHIHIQQW_					0	0	0		ENSG00000165650|ENST00000334464|PDZD8;PDZD8|p.C347Lfs*4|1|0.36|ENSG00000165650|chr10:117318930-117318931|-/A|frameshift_variant	ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	MULTI-MSMS	A375_MHC_IP_R2	2	407.6000671386719	3	407.2	1218.57817	-0.11762	-4.7895E-05	-0.33418	-0.00013608	-0.4518	-0.00018397	407.20003466443563	44.84	0.51075	45.609	45.34	45.85	0.7691					16	9	2	0	0	0	0.19747	1	16760	16760		38.176	28.025	1	2630400			8935	6973	6373	6424	8705	8705					-0.022375417848707002
EEHIHIQQW	9	Unmodified	_EEHIHIQQW_					0	0	0		ENSG00000165650|ENST00000334464|PDZD8;PDZD8|p.C347Lfs*4|1|0.36|ENSG00000165650|chr10:117318930-117318931|-/A|frameshift_variant	ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	MSMS	A375_MHC_IP_R2	2	610.58349609375	2	610.296362	1218.57817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.742	1	45.511	45.011	46.011	0.7691								0	0	0	0.15306	1	16707	16707		22.736	13.991	1				8936	6973	6373	6424	8706	8706					-0.022375417848707002
EEHKIETWRE	10	Unmodified	_EEHKIETWRE_					0	0	0		nc|ENSG00000106617|Q9UGJ0-2|PRKAG2;nc|ENSG00000106617|Q9UGJ0-3|PRKAG2;ENSG00000106617|ENST00000287878|PRKAG2;PRKAG2|p.T495Pfs*11|1|0.12|ENSG00000106617|chr7:151564179-151564180|TC/-|frameshift_variant;ENST00000549726.5_1_12:49398745-49412523:-|nuORF;ENST00000488258.5_1_7:151265789-151372578:-|nuORF;ENST00000546531.5_1_12:49396684-49399341:-|nuORF;nc|ENSG00000181929|P54619-2|PRKAG1;ENSG00000181929|ENST00000548065|PRKAG1;nc|ENSG00000181929|P54619-3|PRKAG1	nc|ENSG00000106617|Q9UGJ0-2|PRKAG2;ENST00000546531.5_1_12:49396684-49399341:-|nuORF	ENST00000546531.5_1_12:49396684-49399341:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	453.28973388671875	3	452.889603	1355.64698	-0.27627	-0.00012512	-0.36804	-0.00016668	-0.64431	-0.0002918	453.223574704621	23.252	0.40759	23.252	23.024	23.432	0					16	7	3	0	0	0	0.69875	1	6383	6383		12.856	0	1	8737000			8937	2702;8368	6374	6425	8707	8707					-0.016619222758208707
EEHKIETWRE	10	Unmodified	_EEHKIETWRE_					0	0	0		nc|ENSG00000106617|Q9UGJ0-2|PRKAG2;nc|ENSG00000106617|Q9UGJ0-3|PRKAG2;ENSG00000106617|ENST00000287878|PRKAG2;PRKAG2|p.T495Pfs*11|1|0.12|ENSG00000106617|chr7:151564179-151564180|TC/-|frameshift_variant;ENST00000549726.5_1_12:49398745-49412523:-|nuORF;ENST00000488258.5_1_7:151265789-151372578:-|nuORF;ENST00000546531.5_1_12:49396684-49399341:-|nuORF;nc|ENSG00000181929|P54619-2|PRKAG1;ENSG00000181929|ENST00000548065|PRKAG1;nc|ENSG00000181929|P54619-3|PRKAG1	nc|ENSG00000106617|Q9UGJ0-2|PRKAG2;ENST00000546531.5_1_12:49396684-49399341:-|nuORF	ENST00000546531.5_1_12:49396684-49399341:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	452.889603	1355.64698	-0.27627	-0.00012512	-0.36804	-0.00016668	-0.64431	-0.0002918	453.223574704621	23.252	0.40759	23.252	23.024	23.432	0	0	0	NaN	12.856	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8737000			8938	2702;8368	6374	6425							-0.016619222758208707
EEHLTVDARVY	11	Unmodified	_EEHLTVDARVY_					0	0	0		ENST00000378952.7_1_10:12209703-12222485:-|nuORF;ENSG00000165609|ENST00000491614|NUDT5	ENST00000378952.7_1_10:12209703-12222485:-|nuORF	ENST00000378952.7_1_10:12209703-12222485:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	444.9578857421875	3	444.557853	1330.65173	0.49239	0.00021889	-0.5786	-0.00025722	-0.086215	-3.8327E-05	444.5575263723907	44.761	0.71125	44.761	44.523	45.234	0					36	13	4	0	0	0	0.48101	1	15634	15634		32.616	28.5	1	5496600			8939	6969	6375	6426	8708	8708					-0.0003703813308675308
EEHLTVDARVY	11	Unmodified	_EEHLTVDARVY_					0	0	0		ENST00000378952.7_1_10:12209703-12222485:-|nuORF;ENSG00000165609|ENST00000491614|NUDT5	ENST00000378952.7_1_10:12209703-12222485:-|nuORF	ENST00000378952.7_1_10:12209703-12222485:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	444.95782470703125	3	444.557853	1330.65173	-0.23588	-0.00010486	-0.65181	-0.00028977	-0.88769	-0.00039463	444.5576372605861	44.06	0.70881	44.829	44.53	45.239	0.7691					41	13	5	0	0	0	0.4957	1	16431	16431		31.462	26.059	1	5831100			8940	6969	6375	6426	8709	8709					-0.0003703813308675308
EEHPASFDW	9	Unmodified	_EEHPASFDW_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-MSMS	A375_MHC_IP_R1	1	559.7054443359375	2	559.232896	1116.45124	-0.55629	-0.0003111	1.2587	0.00070389	0.70238	0.00039279	559.2337535618168	64.675	0.61082	64.675	64.292	64.903	0					17	11	2	0	0	0	0.25276	1	23408	23408		34.102	7.7612	1	1692500			8941	8951	6376	6427	8710	8710					-0.10232887729875983
EEHPASFDW	9	Unmodified	_EEHPASFDW_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-MSMS	A375_MHC_IP_R2	2	559.1725463867188	2	559.232896	1116.45124	-0.62043	-0.00034697	0.3927	0.00021961	-0.22773	-0.00012736	559.23339497795	63.911	0.55835	64.652	64.292	64.85	0.74022					15	10	2	0	0	0	0.1478	1	24269	24269		42.095	17.421	1	1306000			8942	8951	6376	6427	8711	8711					-0.10232887729875983
EEHPELQQF	9	Unmodified	_EEHPELQQF_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-SECPEP	A375_MHC_IP_R2	2	579.1669921875	2	578.767103	1155.51965	-0.10019	-5.7984E-05	0.72443	0.00041928	0.62425	0.00036129	578.7667797762366	47.636	0.66008	48.397	48.073	48.733	0.76127					42	12	5	0	0	0	0.018928	1	17851	17851		99.799	74.4	1	9950600			8943	6247	6377	6428	8712	8712					-0.05188643149995187
EEHPLVFLF	9	Unmodified	_EEHPLVFLF_					0	0	0		nc|ENSG00000162129|Q9H078-5|CLPB;nc|ENSG00000162129|Q9H078-3|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB	nc|ENSG00000162129|Q9H078-5|CLPB	nc|ENSG00000162129|Q9H078-5|CLPB	MULTI-SECPEP	A375_MHC_IP_R1	1	566.1972045898438	2	565.797675	1129.5808	-0.073554	-4.1617E-05	-0.98781	-0.0005589	-1.0614	-0.00060052	565.7971484983351	126.48	0.25293	126.48	126.3	126.56	0					8	4	2	0	0	0	0.4465	1	48338	48338		50.855	35.008	1	10901000			8944	6509	6378	6429	8713	8713					0.02118913620074636
EEHPLVFLF	9	Unmodified	_EEHPLVFLF_					0	0	0		nc|ENSG00000162129|Q9H078-5|CLPB;nc|ENSG00000162129|Q9H078-3|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB	nc|ENSG00000162129|Q9H078-5|CLPB	nc|ENSG00000162129|Q9H078-5|CLPB	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	565.797675	1129.5808	-0.38279	-0.00021658	-0.20421	-0.00011554	-0.587	-0.00033212	565.7974052652479	126.01	0.3049	126.31	126.12	126.43	0.2951	-0.086458	0.0005467	NaN	50.855	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7274000			8945	6509	6378	6429							0.02118913620074636
EEHPSVTLF	9	Unmodified	_EEHPSVTLF_					0	0	0		nc|ENSG00000243989|Q03154-2|ACY1;nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1;ENST00000497128.1_1_3:52009151-52020284:+|nuORF;ENST00000465121.5_1_3:52018080-52021658:+|nuORF	nc|ENSG00000243989|Q03154-2|ACY1	nc|ENSG00000243989|Q03154-2|ACY1	MULTI-SECPEP	A375_MHC_IP_R1	1	530.160888671875	2	529.761289	1057.50803	-0.5214	-0.00027622	-0.043935	-2.3275E-05	-0.56534	-0.0002995	529.7610011647223	73.046	0.65793	73.046	72.779	73.437	0					27	12	3	0	0	0	0.10969	1	26565	26565		67.344	29.193	1	4347200			8946	9816	6379	6430	8714	8714					-0.018428401733444844
EEHPSVTLF	9	Unmodified	_EEHPSVTLF_					0	0	0		nc|ENSG00000243989|Q03154-2|ACY1;nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1;ENST00000497128.1_1_3:52009151-52020284:+|nuORF;ENST00000465121.5_1_3:52018080-52021658:+|nuORF	nc|ENSG00000243989|Q03154-2|ACY1	nc|ENSG00000243989|Q03154-2|ACY1	MULTI-SECPEP	A375_MHC_IP_R2	2	530.1607055664062	2	529.761289	1057.50803	-0.77986	-0.00041314	-0.017959	-9.514E-06	-0.79782	-0.00042265	529.7611584633429	72.162	0.65771	72.896	72.669	73.327	0.73421					18	12	2	0	0	0	0.14105	1	27381	27381		60.39	22.238	1	5040400			8947	9816	6379	6430	8715	8715					-0.018428401733444844
EEHQDAFQLY	10	Unmodified	_EEHQDAFQLY_					0	0	0		ENST00000459993.5_1_3:56658637-56658914:-|nuORF	ENST00000459993.5_1_3:56658637-56658914:-|nuORF	ENST00000459993.5_1_3:56658637-56658914:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	427.666259765625	3	427.19117	1278.55168	-0.22907	-9.7858E-05	-0.17899	-7.6461E-05	-0.40806	-0.00017432	427.1910856349178	39.528	0.35517	40.303	40.118	40.473	0.77451					12	6	3	0	0	0	0.94587	1	14590	14590		3.8763	0	1	1801600			8948	12161	6380	6431	8716	8716					-0.07645275466848034
EEHRGDFSY	9	Unmodified	_EEHRGDFSY_					0	0	0		ENSG00000109805|ENST00000251496|NCAPG;ENST00000509719.1_1_4:17818900-17824753:+|nuORF;ENST00000514176.5_1_4:17816533-17825367:+|nuORF	ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	MSMS	A375_MHC_IP_R2	2	570.1528930664062	2	570.241252	1138.46795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.321	1	69.056	68.556	69.556	0.73511								0	0	0	0.15411	1	25890	25890		14.838	4.7643	1				8949	2894	6381	6432	8717	8717					-0.09574386843883076
EEHSEFVVGF	10	Unmodified	_EEHSEFVVGF_					0	0	0		nc|ENSG00000114491|P11172-2|UMPS;nc|ENSG00000114491|P11172-3|UMPS;ENSG00000114491|ENST00000232607|UMPS	nc|ENSG00000114491|P11172-2|UMPS	nc|ENSG00000114491|P11172-2|UMPS	MULTI-MSMS	A375_MHC_IP_R1	1	590.1742553710938	2	590.269478	1178.5244	-0.52384	-0.00030921	0.97337	0.00057455	0.44954	0.00026535	590.7717099530155	86.42	0.25298	86.42	86.325	86.578	0					5	4	2	0	0	0	0.62155	1	31654	31654		19.257	8.4331	1	1085600			8950	3225	6382	6433	8718	8718					-0.05771759007234323
EEHSEFVVGF	10	Unmodified	_EEHSEFVVGF_					0	0	0		nc|ENSG00000114491|P11172-2|UMPS;nc|ENSG00000114491|P11172-3|UMPS;ENSG00000114491|ENST00000232607|UMPS	nc|ENSG00000114491|P11172-2|UMPS	nc|ENSG00000114491|P11172-2|UMPS	MSMS	A375_MHC_IP_R2	2	590.2279052734375	2	590.269478	1178.5244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.714	1	86.45	85.95	86.95	0.73601								0	0	0	0.062901	1	32591	32591		49.933	25.912	1				8951	3225	6382	6433	8719	8719					-0.05771759007234323
EEHSHLCPLTF	11	Unmodified	_EEHSHLCPLTF_					0	0	0		CNKSR1|p.S704F|1|0.11|ENSG00000142675|chr1:26189496-26189496|C/T|missense_variant	CNKSR1|p.S704F|1|0.11|ENSG00000142675|chr1:26189496-26189496|C/T|missense_variant	CNKSR1|p.S704F|1|0.11|ENSG00000142675|chr1:26189496-26189496|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	656.7136840820312	2	656.803162	1311.59177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.824	1	67.56	67.06	68.06	0.73631								0	0	0	0.16108	1	25316	25316		13.042	2.2185	1				8952	548	6383	6434	8720	8720					-0.051560520679686306
EEHTAVYTAW	10	Unmodified	_EEHTAVYTAW_					0	0	0		ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF	ENSG00000167716|ENST00000409644|WDR81	ENSG00000167716|ENST00000409644|WDR81	MULTI-MSMS	A375_MHC_IP_R1	1	604.17529296875	2	603.774928	1205.5353	-0.35424	-0.00021388	0.36597	0.00022096	0.011729	7.0818E-06	603.7750961471503	60.306	0.45712	60.306	60.109	60.566	0					14	8	2	0	0	0	0.015059	1	21734	21734		88.954	65.805	1	1860300			8953	7216	6384	6435	8721	8721					-0.059243566329541864
EEHTAVYTAW	10	Unmodified	_EEHTAVYTAW_					0	0	0		ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF	ENSG00000167716|ENST00000409644|WDR81	ENSG00000167716|ENST00000409644|WDR81	MULTI-MATCH	A375_MHC_IP_R2	2		2	603.774928	1205.5353	-0.83437	-0.00050377	0.35229	0.0002127	-0.48208	-0.00029107	603.7750682909386	59.627	0.45573	60.375	60.148	60.603	0.74714	0.034484	-8.111E-06	NaN	88.954	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2435300			8954	7216	6384	6435							-0.059243566329541864
EEHWNERFWVM	11	Unmodified	_EEHWNERFWVM_					0	0	0			REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	A375_MHC_IP_R1	1	521.9669799804688	3	521.566354	1561.67723	-0.090027	-4.6955E-05	0.54191	0.00028264	0.45188	0.00023569	521.5667664017751	48.603	0.60749	48.603	48.325	48.933	0					44	11	6	0	0	0	0.7328	1	17105	17105		6.2344	2.1177	1	33011000	+		8955	22186	6385	6436	8722	8722					-0.08113886882301813
EEIAFLKKL	9	Unmodified	_EEIAFLKKL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R1	1	364.6216125488281	3	364.221742	1089.6434	0.38714	0.00014101	-0.57301	-0.0002087	-0.18587	-6.7696E-05	364.2214360798459	71.44	3.596	71.44	71.108	74.704	0					171	70	5	0	0	0	0.04093	4	25956	25956;26125;26180;26612		67.838	23.805	1	558380000			8956	1093	6386	6437	8723;8724;8725;8726	8723					0.10216059688286805
EEIAFLKKL	9	Unmodified	_EEIAFLKKL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	A375_MHC_IP_R1	1	545.6581420898438	2	545.828975	1089.6434	-0.35498	-0.00019376	-0.42195	-0.00023031	-0.77693	-0.00042407	545.8286964947393	71.44	2.6331	71.44	71.057	73.69	0					130	51	5	0	0	0	0.0042279	1	26000	26000		163.04	84.308	1	312580000			8957	1093	6386	6437	8727	8727					0.10216059688286805
EEIAFLKKL	9	Unmodified	_EEIAFLKKL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R2	2	364.621337890625	3	364.221742	1089.6434	-0.042933	-1.5637E-05	-0.33889	-0.00012343	-0.38182	-0.00013907	364.22157366248575	70.647	3.0423	71.382	70.997	74.039	0.73421					185	59	6	0	0	0	0.04093	6	26707	26707;26914;26924;27015;27367;27590		67.838	27.454	1	776080000			8958	1093	6386	6437	8728;8729;8730;8731;8732;8733	8728					0.10216059688286805
EEIAFLKKL	9	Unmodified	_EEIAFLKKL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	A375_MHC_IP_R2	2	546.2281494140625	2	545.828975	1089.6434	-0.81583	-0.0004453	-0.12165	-6.6401E-05	-0.93748	-0.00051171	545.8288990120643	70.593	2.2284	71.327	71.048	73.276	0.73421					118	43	6	0	0	0	0.0085579	1	26706	26706		125.53	71.696	1	383640000			8959	1093	6386	6437	8734	8734					0.10216059688286805
EEIAFYNGN	9	Unmodified	_EEIAFYNGN_					0	0	0		ENSG00000117528|ENST00000370214|ABCD3	ENSG00000117528|ENST00000370214|ABCD3	ENSG00000117528|ENST00000370214|ABCD3	MULTI-MSMS	A375_MHC_IP_R2	2	528.689208984375	2	528.735271	1055.45599	-0.91383	-0.00048317	0.48928	0.0002587	-0.42455	-0.00022447	528.7351268983572	59.71	0.85854	60.457	60.047	60.906	0.74714					31	16	3	0	0	0	0.58047	1	22664	22664		15.847	1.2655	1	4019900			8960	3491	6387	6438	8735	8735					-0.06952003587070976
EEIAFYNGN	9	Unmodified	_EEIAFYNGN_					0	0	0		ENSG00000117528|ENST00000370214|ABCD3	ENSG00000117528|ENST00000370214|ABCD3	ENSG00000117528|ENST00000370214|ABCD3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	528.735271	1055.45599	-0.5381	-0.00028451	0.6208	0.00032824	0.082692	4.3722E-05	528.7351190237863	60.286	0.66243	60.286	59.955	60.618	0	-0.085372	7.198E-05	NaN	15.847	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5696700			8961	3491	6387	6438							-0.06952003587070976
EEIAIIPSKKL	11	Unmodified	_EEIAIIPSKKL_					0	0	0		ENSG00000182774|ENST00000647841|RPS17;ENST00000559273.1_1_15:83208730-83209179:-|nuORF;ENST00000560639.1_1_15:83207600-83209179:-|nuORF	ENSG00000182774|ENST00000647841|RPS17	ENSG00000182774|ENST00000647841|RPS17	MULTI-MSMS	A375_MHC_IP_R1	1	415.2867431640625	3	414.255223	1239.74384	0.4197	0.00017386	-0.34424	-0.0001426	0.075468	3.1263E-05	414.25512150085484	56.007	1.6269	56.007	55.687	57.313	0					96	31	6	0	0	0	0.056403	3	20030	19998;20030;20213		78.116	38.193	1	335370000			8962	8436	6388	6439	8736;8737;8738	8737					0.13355671951308068
EEIAIIPSKKL	11	Unmodified	_EEIAIIPSKKL_					0	0	0		ENSG00000182774|ENST00000647841|RPS17;ENST00000559273.1_1_15:83208730-83209179:-|nuORF;ENST00000560639.1_1_15:83207600-83209179:-|nuORF	ENSG00000182774|ENST00000647841|RPS17	ENSG00000182774|ENST00000647841|RPS17	MULTI-MSMS	A375_MHC_IP_R1	1	621.2792358398438	2	620.879196	1239.74384	-0.34107	-0.00021177	0.010043	6.2358E-06	-0.33103	-0.00020553	620.8791909007521	55.992	1.1669	55.992	55.738	56.905	0					70	22	5	0	0	0	0.067248	1	20239	20239		91.085	56.153	1	143280000			8963	8436	6388	6439	8739	8739					0.13355671951308068
EEIAIIPSKKL	11	Unmodified	_EEIAIIPSKKL_					0	0	0		ENSG00000182774|ENST00000647841|RPS17;ENST00000559273.1_1_15:83208730-83209179:-|nuORF;ENST00000560639.1_1_15:83207600-83209179:-|nuORF	ENSG00000182774|ENST00000647841|RPS17	ENSG00000182774|ENST00000647841|RPS17	MULTI-MSMS	A375_MHC_IP_R2	2	414.9524230957031	3	414.255223	1239.74384	-0.11772	-4.8765E-05	-0.014136	-5.8561E-06	-0.13185	-5.4621E-05	414.25522678562334	55.191	1.4255	55.942	55.575	57.001	0.75075					103	27	6	0	0	0	0.11928	3	20759	20759;20771;20993		66.617	35.155	1	268750000			8964	8436	6388	6439	8740;8741;8742	8740					0.13355671951308068
EEIAIIPSKKL	11	Unmodified	_EEIAIIPSKKL_					0	0	0		ENSG00000182774|ENST00000647841|RPS17;ENST00000559273.1_1_15:83208730-83209179:-|nuORF;ENST00000560639.1_1_15:83207600-83209179:-|nuORF	ENSG00000182774|ENST00000647841|RPS17	ENSG00000182774|ENST00000647841|RPS17	MULTI-MSMS	A375_MHC_IP_R2	2	621.2787475585938	2	620.879196	1239.74384	-0.84126	-0.00052232	0.2595	0.00016112	-0.58177	-0.00036121	620.8793093501632	55.162	1.1189	55.913	55.626	56.745	0.75075					63	21	5	0	0	0	0.087811	1	21020	21020		85.764	57.27	1	106460000			8965	8436	6388	6439	8743	8743					0.13355671951308068
EEIANYRPT	9	Unmodified	_EEIANYRPT_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R2	2	547.1685180664062	2	546.769645	1091.52474	-1.1516	-0.00062968	-0.72306	-0.00039535	-1.8747	-0.001025	546.7695047509686	58.748	0.61004	59.495	59.235	59.845	0.74714					23	11	3	0	0	0	0.63327	1	22228	22228		18.146	0	1	2961200			8966	3298	6389	6440	8744	8744					-0.017363392873676275
EEIAQLARQY	10	Unmodified	_EEIAQLARQY_					0	0	0		ENST00000378892.5_1_9:34637493-34637721:-|nuORF;nc|ENSG00000147955|Q99720-4|SIGMAR1;ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-3|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	611.2169799804688	2	610.817127	1219.6197	-0.39168	-0.00023925	0.30848	0.00018842	-0.083205	-5.0823E-05	610.8173144618106	58.404	0.76054	58.404	58.126	58.887	0					39	14	4	0	0	0	2.2285E-20	1	20943	20943		250.47	150.67	1	26109000			8967	5713	6390	6441	8745	8745					0.018675941838182553
EEIAQLARQY	10	Unmodified	_EEIAQLARQY_					0	0	0		ENST00000378892.5_1_9:34637493-34637721:-|nuORF;nc|ENSG00000147955|Q99720-4|SIGMAR1;ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-3|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	611.2167358398438	2	610.817127	1219.6197	-0.79828	-0.0004876	-0.017362	-1.0605E-05	-0.81564	-0.00049821	610.8171729474379	57.657	0.75941	58.406	58.12	58.879	0.74895					36	14	5	0	0	0	2.2285E-20	1	21785	21785		250.47	150.67	1	27874000			8968	5713	6390	6441	8746	8746					0.018675941838182553
EEIASSGTSY	10	Unmodified	_EEIASSGTSY_					0	0	0		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MULTI-SECPEP	A375_MHC_IP_R1	1	522.6293334960938	2	522.230019	1042.44548	-0.48711	-0.00025439	-0.11736	-6.1288E-05	-0.60447	-0.00031567	522.2298691296132	36.126	0.71077	36.126	35.778	36.489	0					29	13	3	0	0	0	0.063796	1	12025	12025		78.149	61.036	1	10181000			8969	878	6391	6442	8747	8747					-0.07404031032160674
EEIASSGTSY	10	Unmodified	_EEIASSGTSY_					0	0	0		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MULTI-SECPEP	A375_MHC_IP_R2	2	522.9180297851562	2	522.230019	1042.44548	-0.81199	-0.00042404	0.095663	4.9958E-05	-0.71632	-0.00037409	522.2299424685455	35.473	1.162	36.236	35.425	36.587	0.76338					43	22	3	0	0	0	0.013544	1	12910	12910		123.45	109.54	1	11799000			8970	878	6391	6442	8748	8748					-0.07404031032160674
EEIASTDLKY	10	Unmodified	_EEIASTDLKY_					0	0	0		ENSG00000089289|ENST00000356413|IGBP1;ENST00000503202.1_1_4:83323057-83323543:-|nuORF	ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	MULTI-MSMS	A375_MHC_IP_R1	1	585.1903076171875	2	584.790244	1167.56593	-0.2586	-0.00015123	-0.067885	-3.9698E-05	-0.32649	-0.00019093	584.7900547990173	50.644	0.55801	50.644	50.408	50.966	0					20	10	3	0	0	0	0.056042	2	17954	17900;17954		74.2	38.073	1	3805000			8971	1926	6392	6443	8749;8750	8750					-0.011146230385747913
EEIASTDLKY	10	Unmodified	_EEIASTDLKY_					0	0	0		ENSG00000089289|ENST00000356413|IGBP1;ENST00000503202.1_1_4:83323057-83323543:-|nuORF	ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	MULTI-MSMS	A375_MHC_IP_R2	2	585.18994140625	2	584.790244	1167.56593	-0.7051	-0.00041233	0.079549	4.6519E-05	-0.62555	-0.00036581	584.7898169853563	49.965	0.71232	50.719	50.548	51.26	0.75406					25	13	3	0	0	0	0.012014	2	18811	18781;18811		91.085	43.336	1	3551100			8972	1926	6392	6443	8751;8752	8752					-0.011146230385747913
EEIATGQAF	9	Unmodified	_EEIATGQAF_					0	0	0		ENSG00000106624|ENST00000223357|AEBP1;AEBP1|p.K1133_E1134del|1|0.83|ENSG00000106624|chr7:44114176-44114181|AGGAGA/-|inframe_deletion;nc|ENSG00000106624|Q8IUX7-2|AEBP1	ENSG00000106624|ENST00000223357|AEBP1;nc|ENSG00000106624|Q8IUX7-2|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	MULTI-MSMS	A375_MHC_IP_R1	1	483.6318664550781	2	483.232364	964.450176	-0.3394	-0.00016401	0.18464	8.9225E-05	-0.15475	-7.4782E-05	483.2322100734781	59.422	0.91477	59.422	58.736	59.651	0					25	17	2	0	0	0	0.067501	1	21408	21408		57.471	21.427	1	1556300			8973	2703;14529	6393	6444	8753	8753					-0.033471020987576594
EEIATGQAF	9	Unmodified	_EEIATGQAF_					0	0	0		ENSG00000106624|ENST00000223357|AEBP1;AEBP1|p.K1133_E1134del|1|0.83|ENSG00000106624|chr7:44114176-44114181|AGGAGA/-|inframe_deletion;nc|ENSG00000106624|Q8IUX7-2|AEBP1	ENSG00000106624|ENST00000223357|AEBP1;nc|ENSG00000106624|Q8IUX7-2|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	483.232364	964.450176	-0.93768	-0.00045312	-0.32569	-0.00015738	-1.2634	-0.0006105	483.2320621553352	58.767	0.55722	59.514	59.185	59.742	0.74714	0.046232	-0.00028063	NaN	57.471	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1118900			8974	2703;14529	6393	6444							-0.033471020987576594
EEIDEEYDSI	10	Unmodified	_EEIDEEYDSI_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-SECPEP	A375_MHC_IP_R1	1	621.6539306640625	2	621.25643	1240.49831	-0.40959	-0.00025446	-3.1292	-0.001944	-3.5388	-0.0021985	621.2539097650741	55.496	0.3053	55.496	55.33	55.635	0					8	5	2	0	0	0	0.78945	1	19889	19889		19.257	10.512	1	1579500	+		8975	22304	6394	6445	8754	8754					-0.11232117760027904
EEIDEKIGF	9	Unmodified	_EEIDEKIGF_					0	0	0		MSANTD4|p.R241Gfs*3|1|0.2|ENSG00000170903|chr11:106009852-106009852|G/-|frameshift_variant;ENSG00000170903|ENST00000301919|MSANTD4	MSANTD4|p.R241Gfs*3|1|0.2|ENSG00000170903|chr11:106009852-106009852|G/-|frameshift_variant	MSANTD4|p.R241Gfs*3|1|0.2|ENSG00000170903|chr11:106009852-106009852|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	540.6659545898438	2	540.266404	1078.51826	-0.84818	-0.00045824	1.0117	0.00054657	0.16349	8.8329E-05	540.2663259496629	66.542	1.0208	66.542	66.173	67.194	0					48	19	4	0	0	0	0.070665	1	24104	24104		78.728	36.888	1	8670000			8976	7557	6395	6446	8755	8755					-0.017862772387616133
EEIDEKIGF	9	Unmodified	_EEIDEKIGF_					0	0	0		MSANTD4|p.R241Gfs*3|1|0.2|ENSG00000170903|chr11:106009852-106009852|G/-|frameshift_variant;ENSG00000170903|ENST00000301919|MSANTD4	MSANTD4|p.R241Gfs*3|1|0.2|ENSG00000170903|chr11:106009852-106009852|G/-|frameshift_variant	MSANTD4|p.R241Gfs*3|1|0.2|ENSG00000170903|chr11:106009852-106009852|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	540.1792602539062	2	540.266404	1078.51826	-1.0425	-0.00056325	0.86679	0.0004683	-0.17574	-9.4948E-05	540.2662705769264	65.799	1.3739	66.537	65.766	67.14	0.73812					49	26	3	0	0	0	0.047602	2	24934	24931;24934		65.235	23.395	1	8771600			8977	7557	6395	6446	8756;8757	8757					-0.017862772387616133
EEIDENFKALF	11	Unmodified	_EEIDENFKALF_					0	0	0		ENSG00000014216|ENST00000279247|CAPN1	ENSG00000014216|ENST00000279247|CAPN1	ENSG00000014216|ENST00000279247|CAPN1	MULTI-SECPEP	A375_MHC_IP_R1	1	677.7598876953125	2	677.8299	1353.64525	-0.40894	-0.00027719	0.065728	4.4552E-05	-0.34321	-0.00023264	678.3313386621987	107.1	0.4595	107.1	106.83	107.29	0					12	8	2	0	0	0	0.065145	1	39259	39259		81.915	57.895	1	2829700			8978	1030	6396	6447	8758	8758					-0.017429760844379416
EEIDENFKALF	11	Unmodified	_EEIDENFKALF_					0	0	0		ENSG00000014216|ENST00000279247|CAPN1	ENSG00000014216|ENST00000279247|CAPN1	ENSG00000014216|ENST00000279247|CAPN1	MULTI-SECPEP	A375_MHC_IP_R2	2	677.759765625	2	677.8299	1353.64525	-0.7012	-0.0004753	0.16556	0.00011222	-0.53565	-0.00036308	677.8300664397161	106.35	0.45847	107.11	106.88	107.34	0.75977					16	8	3	0	0	0	0.14752	1	40169	40169		69.338	38.07	1	2478600			8979	1030	6396	6447	8759	8759					-0.017429760844379416
EEIDERLF	8	Unmodified	_EEIDERLF_					0	0	0			REV__ENST00000411995.6_1_1:40916463-40916502:+|nuORF	REV__ENST00000411995.6_1_1:40916463-40916502:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	525.2051391601562	2	525.758746	1049.50294	-0.467	-0.00024553	0.29491	0.00015505	-0.17209	-9.048E-05	525.7586064363412	50.688	0.60941	50.688	50.408	51.017	0					16	9	2	0	0	0	0.7338	1	17995	17995		24.674	3.8027	1	2504500	+		8980	24485	6397	6448	8760	8760					-0.019831440359666885
EEIDGFGEFY	10	Unmodified	_EEIDGFGEFY_					0	0	0			REV__nc|ENSG00000132819|Q9H0Z9-2|RBM38	REV__nc|ENSG00000132819|Q9H0Z9-2|RBM38	MSMS	A375_MHC_IP_R1	1	603.0107421875	2	603.253494	1204.49243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.543	1	73.543	73.043	74.043	0								0	0	0	0.15417	1	26780	26780		7.2892	0.56607	1		+		8981	18683	6398	6449	8761	8761					-0.10163171481008249
EEIDIHNEF	9	Unmodified	_EEIDIHNEF_					0	0	0		ENSG00000112367|ENST00000230124|FIG4;FIG4|p.R679W|1|0.45|ENSG00000112367|chr6:109786388-109786388|C/T|missense_variant	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MULTI-MSMS	A375_MHC_IP_R1	1	573.6592407226562	2	573.259111	1144.50367	-0.14198	-8.1392E-05	0.0032338	1.8538E-06	-0.13875	-7.9538E-05	573.2590529761598	62.893	0.66538	62.893	62.609	63.274	0					40	12	4	0	0	0	0.0018976	2	22688	22663;22688		145.13	73.207	1	11581000			8982	3082	6399	6450	8762;8763	8763					-0.06280349386906892
EEIDIHNEF	9	Unmodified	_EEIDIHNEF_					0	0	0		ENSG00000112367|ENST00000230124|FIG4;FIG4|p.R679W|1|0.45|ENSG00000112367|chr6:109786388-109786388|C/T|missense_variant	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MULTI-MSMS	A375_MHC_IP_R2	2	573.658935546875	2	573.259111	1144.50367	-0.39404	-0.00022589	-0.20701	-0.00011867	-0.60104	-0.00034455	573.2588933076557	62.316	0.76174	63.059	62.622	63.383	0.74263					36	14	5	0	0	0	0.0061124	1	23572	23572		133.05	51.162	1	8769800			8983	3082	6399	6450	8764	8764					-0.06280349386906892
EEIDLEGKF	9	Unmodified	_EEIDLEGKF_					0	0	0		ENSG00000176619|ENST00000325327|LMNB2	ENSG00000176619|ENST00000325327|LMNB2	ENSG00000176619|ENST00000325327|LMNB2	MULTI-MSMS	A375_MHC_IP_R1	1	540.684326171875	2	540.266404	1078.51826	-0.18978	-0.00010253	-2.8372	-0.0015328	-3.027	-0.0016354	540.2662935178615	69.707	0.40393	69.707	69.529	69.933	0					14	7	3	0	0	0	0.094655	1	25290	25290		51.63	7.7715	1	1502600			8984	8028	6400	6451	8765	8765					-0.017862772387616133
EEIDLEGKF	9	Unmodified	_EEIDLEGKF_					0	0	0		ENSG00000176619|ENST00000325327|LMNB2	ENSG00000176619|ENST00000325327|LMNB2	ENSG00000176619|ENST00000325327|LMNB2	MULTI-MSMS	A375_MHC_IP_R2	2	540.677001953125	2	540.266404	1078.51826	-0.74397	-0.00040194	-3.1046	-0.0016773	-3.8486	-0.0020792	540.7653910467606	69.07	0.45715	69.805	69.575	70.032	0.73511					13	8	2	0	0	0	0.11629	1	26174	26174		47.749	9.7747	1	1435300			8985	8028	6400	6451	8766	8766					-0.017862772387616133
EEIDLRSVGW	10	Unmodified	_EEIDLRSVGW_					0	0	0		ENSG00000110057|ENST00000227471|UNC93B1	ENSG00000110057|ENST00000227471|UNC93B1	ENSG00000110057|ENST00000227471|UNC93B1	MULTI-SECPEP	A375_MHC_IP_R1	1	602.7034912109375	2	602.303852	1202.59315	-0.35174	-0.00021185	0.53123	0.00031996	0.17949	0.00010811	602.3041839559789	96.215	0.76305	96.215	95.917	96.68	0					25	14	2	0	0	0	0.010364	1	35338	35338		143.21	99.355	1	10337000			8986	2913	6401	6452	8767	8767					-4.0947075376607245E-05
EEIDLRSVGW	10	Unmodified	_EEIDLRSVGW_					0	0	0		ENSG00000110057|ENST00000227471|UNC93B1	ENSG00000110057|ENST00000227471|UNC93B1	ENSG00000110057|ENST00000227471|UNC93B1	MULTI-MSMS	A375_MHC_IP_R2	2	602.7030029296875	2	602.303852	1202.59315	-0.32109	-0.00019339	-0.59515	-0.00035846	-0.91624	-0.00055186	602.3039324787785	95.549	0.81667	96.299	95.836	96.653	0.75044					52	15	5	0	0	0	3.2397E-05	1	36252	36252		166.77	114.5	1	10386000			8987	2913	6401	6452	8768	8768					-4.0947075376607245E-05
EEIDLSGNKL	10	Unmodified	_EEIDLSGNKL_					0	0	0		nc|ENSG00000081913|O60346-2|PHLPP1;ENSG00000081913|ENST00000262719|PHLPP1	nc|ENSG00000081913|O60346-2|PHLPP1	nc|ENSG00000081913|O60346-2|PHLPP1	MULTI-SECPEP	A375_MHC_IP_R1	1	559.690185546875	2	559.290411	1116.56627	-0.43987	-0.00024602	0.3421	0.00019133	-0.097776	-5.4685E-05	559.2904086123909	57.084	0.56018	57.084	56.804	57.364	0					19	10	3	0	0	0	0.328	1	20420	20420		57.722	25.416	1	5353300			8988	1748	6402	6453	8769	8769					0.012647966812892264
EEIDLSGNKL	10	Unmodified	_EEIDLSGNKL_					0	0	0		nc|ENSG00000081913|O60346-2|PHLPP1;ENSG00000081913|ENST00000262719|PHLPP1	nc|ENSG00000081913|O60346-2|PHLPP1	nc|ENSG00000081913|O60346-2|PHLPP1	MULTI-SECPEP	A375_MHC_IP_R2	2	559.6898803710938	2	559.290411	1116.56627	-0.99429	-0.0005561	1.6121	0.00090163	0.61781	0.00034553	559.2908301011303	56.349	1.0698	57.099	56.693	57.763	0.75015					33	20	3	0	0	0	0.026214	1	21282	21282		96.367	27.262	1	4147100			8989	1748	6402	6453	8770	8770					0.012647966812892264
EEIDRNYD	8	Unmodified	_EEIDRNYD_					0	0	0			REV__ENSG00000135862|ENST00000258341|LAMC1	REV__ENSG00000135862|ENST00000258341|LAMC1	MSMS	A375_MHC_IP_R1	1	527.1665649414062	2	527.22781	1052.44107	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.748	1	69.748	69.248	70.248	0								0	0	0	0.16876	1	25315	25315		9.3474	0.75416	1		+		8990	18892	6403	6454	8771	8771					-0.08305495455101664
EEIDVDGKFI	10	Unmodified	_EEIDVDGKFI_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-SECPEP	A375_MHC_IP_R1	1	583.21142578125	2	582.792786	1163.57102	-0.26986	-0.00015727	-0.81164	-0.00047302	-1.0815	-0.00063029	583.2940094292436	75.949	0.85837	75.949	75.714	76.572	0					29	16	3	0	0	0	0.62001	1	27643	27643		33.445	11.908	1	2068800			8991	3145	6404	6455	8772	8772					-0.004223191759365363
EEIECHEY	8	Unmodified	_EEIECHEY_					0	0	0		CFAP74|p.M272I|1|0.2|ENSG00000142609|chr1:1972052-1972052|C/T|missense_variant	CFAP74|p.M272I|1|0.2|ENSG00000142609|chr1:1972052-1972052|C/T|missense_variant	CFAP74|p.M272I|1|0.2|ENSG00000142609|chr1:1972052-1972052|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	526.190673828125	2	526.205489	1050.39643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.389	1	49.389	48.889	49.889	0								0	0	0	0.16876	1	17465	17465		10.183	0.83596	1				8992	376	6405	6456	8773	8773					-0.12675642592762415
EEIEDTLMD	9	Unmodified	_EEIEDTLMD_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	A375_MHC_IP_R1	1	1094.4937744140625	1	1094.4558	1093.44852	-0.33126	-0.00036254	-1.3151	-0.0014394	-1.6464	-0.0018019	1094.457109137404	121.9	0.55832	121.9	121.62	122.18	0					19	10	3	0	0	0	0.63811	1	45222	45222		12.532	5.2423	1	35216000			8993	3055	6406	6457	8774	8774					-0.094465239696774
EEIEGFRY	8	Unmodified	_EEIEGFRY_					0	0	0		nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56;ENST00000446987.5_1_7:44605603-44612175:-|nuORF;ENST00000415758.1_1_7:44608571-44609680:-|nuORF;ENST00000421223.5_1_7:44605603-44609680:-|nuORF	nc|ENSG00000136271|Q9NY93-2|DDX56	nc|ENSG00000136271|Q9NY93-2|DDX56	MULTI-MSMS	A375_MHC_IP_R1	1	523.2131958007812	2	521.745639	1041.47673	-0.5	-0.00026087	0.16788	8.7591E-05	-0.33212	-0.00017328	521.7457170453018	60.286	1.7318	60.286	59.803	61.534	0					83	33	5	0	0	0	0.36021	1	21672	21672		54.774	18.729	1	197010000			8994	4776	6407	6458	8775	8775					-0.04235413207425154
EEIEGFRY	8	Unmodified	_EEIEGFRY_					0	0	0		nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56;ENST00000446987.5_1_7:44605603-44612175:-|nuORF;ENST00000415758.1_1_7:44608571-44609680:-|nuORF;ENST00000421223.5_1_7:44605603-44609680:-|nuORF	nc|ENSG00000136271|Q9NY93-2|DDX56	nc|ENSG00000136271|Q9NY93-2|DDX56	MULTI-SECPEP	A375_MHC_IP_R2	2	522.1452026367188	2	521.745639	1041.47673	-0.9764	-0.00050943	0.27675	0.00014439	-0.69964	-0.00036504	521.7457346999906	59.627	1.3695	60.375	59.946	61.316	0.74714					70	26	4	0	0	0	0.2175	1	22682	22682		88.904	17.77	1	180070000			8995	4776	6407	6458	8776	8776					-0.04235413207425154
EEIEGFVEFY	10	Unmodified	_EEIEGFVEFY_					0	0	0			REV__ENSG00000112183|ENST00000379052|RBM24	REV__ENSG00000112183|ENST00000379052|RBM24	MULTI-SECPEP	A375_MHC_IP_R2	2	631.977294921875	2	631.284794	1260.55504	-1.1622	-0.00073368	0.68906	0.00043499	-0.47315	-0.00029869	631.2849212930861	26.678	0.30489	27.338	27.161	27.466	0.65992					7	5	2	0	0	0	0.9269	1	9046	9046		6.7232	0.99131	1	1559400	+		8996	17715	6408	6459	8777	8777					-0.06482025412833536
EEIEKGVEI	9	Unmodified	_EEIEKGVEI_					0	0	0		ENSG00000127125|ENST00000372561|PPCS;nc|ENSG00000127125|Q9HAB8-2|PPCS	ENSG00000127125|ENST00000372561|PPCS	ENSG00000127125|ENST00000372561|PPCS	MULTI-MSMS	A375_MHC_IP_R1	1	523.6739501953125	2	523.274229	1044.53391	-0.56268	-0.00029444	-0.077653	-4.0634E-05	-0.64034	-0.00033507	523.274099027949	46.516	0.60503	46.516	46.245	46.85	0					23	11	3	0	0	0	0.0099737	1	16311	16311		96.367	13.837	1	8561800			8997	4078	6409	6460	8778	8778					0.01342009278300793
EEIEKGVEI	9	Unmodified	_EEIEKGVEI_					0	0	0		ENSG00000127125|ENST00000372561|PPCS;nc|ENSG00000127125|Q9HAB8-2|PPCS	ENSG00000127125|ENST00000372561|PPCS	ENSG00000127125|ENST00000372561|PPCS	MULTI-MSMS	A375_MHC_IP_R2	2	523.6737670898438	2	523.274229	1044.53391	-0.54019	-0.00028267	0.0042338	2.2155E-06	-0.53596	-0.00028045	523.2740833752613	45.762	0.60372	46.527	46.201	46.805	0.76519					27	11	3	0	0	0	0.0090499	1	17088	17088		100.09	27.123	1	8641200			8998	4078	6409	6460	8779	8779					0.01342009278300793
EEIERFFKL	9	Unmodified	_EEIERFFKL_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	A375_MHC_IP_R1	1	605.9156494140625	2	605.826963	1209.63937	-0.48555	-0.00029416	0.56196	0.00034045	0.076411	4.6292E-05	605.8271672530894	84.104	0.75702	84.104	83.685	84.442	0					26	14	3	0	0	0	0.6421	1	30737	30737		12.241	4.6317	1	3612200			8999	3161	6410	6461	8780	8780					0.04293970194589747
EEIERFFKL	9	Unmodified	_EEIERFFKL_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	A375_MHC_IP_R1	1	404.6199035644531	3	404.220401	1209.63937	-0.60569	-0.00024483	0.76001	0.00030721	0.15432	6.2378E-05	404.22067197003105	84.083	0.91132	84.083	83.786	84.697	0					37	17	4	0	0	0	0.037085	1	30764	30764		69.338	21.606	1	5927700			9000	3161	6410	6461	8781	8781					0.04293970194589747
EEIERFFKL	9	Unmodified	_EEIERFFKL_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	A375_MHC_IP_R2	2	404.62054443359375	3	404.220401	1209.63937	0.038887	1.5719E-05	-0.12324	-4.9815E-05	-0.08435	-3.4096E-05	404.2202505804774	83.262	0.76329	84.001	83.694	84.458	0.73962					31	14	4	0	0	0	0.037085	1	31624	31624		69.338	28.613	1	5034700			9001	3161	6410	6461	8782	8782					0.04293970194589747
EEIERFFKL	9	Unmodified	_EEIERFFKL_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-SECPEP	A375_MHC_IP_R2	2	606.22705078125	2	605.826963	1209.63937	-0.39633	-0.00024011	0.050925	3.0852E-05	-0.3454	-0.00020925	605.8266074456253	83.155	0.50835	83.894	83.745	84.254	0.73962					17	9	2	0	0	0	0.13093	1	31631	31631		67.838	37.202	1	2211600			9002	3161	6410	6461	8783	8783					0.04293970194589747
EEIERIKEI	9	Unmodified	_EEIERIKEI_					0	0	0		nc|ENSG00000072682|O15460|P4HA2;ENSG00000072682|ENST00000360568|P4HA2	nc|ENSG00000072682|O15460|P4HA2	nc|ENSG00000072682|O15460|P4HA2	MULTI-SECPEP	A375_MHC_IP_R1	1	580.2215576171875	2	579.821878	1157.6292	-0.49599	-0.00028759	0.18951	0.00010988	-0.30648	-0.0001777	579.8220130686101	38.089	0.50898	38.089	37.862	38.371	0					19	9	3	0	0	0	0.051108	1	12882	12882		103.82	13.689	1	6971300			9003	1543	6411	6462	8784	8784					0.056693624693252787
EEIERIKEI	9	Unmodified	_EEIERIKEI_					0	0	0		nc|ENSG00000072682|O15460|P4HA2;ENSG00000072682|ENST00000360568|P4HA2	nc|ENSG00000072682|O15460|P4HA2	nc|ENSG00000072682|O15460|P4HA2	MULTI-MSMS	A375_MHC_IP_R2	2	580.2208862304688	2	579.821878	1157.6292	-0.79476	-0.00046082	-0.082514	-4.7844E-05	-0.87727	-0.00050866	579.8216967221105	37.274	0.50824	38.045	37.767	38.275	0.7709					14	9	2	0	0	0	0.016157	1	13623	13623		88.364	12.793	1	5458700			9004	1543	6411	6462	8785	8785					0.056693624693252787
EEIERIKEI	9	Unmodified	_EEIERIKEI_					0	0	0		nc|ENSG00000072682|O15460|P4HA2;ENSG00000072682|ENST00000360568|P4HA2	nc|ENSG00000072682|O15460|P4HA2	nc|ENSG00000072682|O15460|P4HA2	MULTI-SECPEP	A375_MHC_IP_R2	2	387.2835693359375	3	386.883677	1157.6292	-0.65511	-0.00025345	0.6632	0.00025658	0.008089	3.1295E-06	386.8838786571828	37.322	0.45846	38.093	37.816	38.275	0.7709					21	8	3	0	0	0	0.44554	1	13611	13611		34.222	9.3401	1	6296500			9005	1543	6411	6462	8786	8786					0.056693624693252787
EEIESNECNY	10	Unmodified	_EEIESNECNY_					0	0	0		ENST00000322244.9_1_4:68484337-68484529:-|nuORF	ENST00000322244.9_1_4:68484337-68484529:-|nuORF	ENST00000322244.9_1_4:68484337-68484529:-|nuORF	MSMS	A375_MHC_IP_R2	2	615.1949462890625	2	615.234975	1228.4554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.528	1	59.277	58.777	59.777	0.74894								0	0	0	0.15308	1	22144	22144		10.824	0	1				9006	10704	6412	6463	8787	8787					-0.1496921108910101
EEIESSAQY	9	Unmodified	_EEIESSAQY_					0	0	0		nc|ENSG00000204842|Q99700-2|ATXN2;nc|ENSG00000204842|Q99700-5|ATXN2;ENSG00000204842|ENST00000673436|ATXN2;nc|ENSG00000204842|Q99700-4|ATXN2;nc|ENSG00000204842|Q99700|ATXN2	nc|ENSG00000204842|Q99700-2|ATXN2	nc|ENSG00000204842|Q99700-2|ATXN2	MULTI-MSMS	A375_MHC_IP_R1	1	528.6300659179688	2	528.230019	1054.44548	-0.53573	-0.00028299	0.064894	3.4279E-05	-0.47084	-0.00024871	528.2300322992357	37.056	0.60693	37.056	36.795	37.402	0					20	11	2	0	0	0	0.005759	1	12474	12474		133.7	75.023	1	4690700			9007	9482	6413	6464	8788	8788					-0.07956031032176725
EEIESSAQY	9	Unmodified	_EEIESSAQY_					0	0	0		nc|ENSG00000204842|Q99700-2|ATXN2;nc|ENSG00000204842|Q99700-5|ATXN2;ENSG00000204842|ENST00000673436|ATXN2;nc|ENSG00000204842|Q99700-4|ATXN2;nc|ENSG00000204842|Q99700|ATXN2	nc|ENSG00000204842|Q99700-2|ATXN2	nc|ENSG00000204842|Q99700-2|ATXN2	MULTI-MSMS	A375_MHC_IP_R2	2	528.6295776367188	2	528.230019	1054.44548	-0.80586	-0.00042568	-0.17532	-9.2608E-05	-0.98118	-0.00051829	528.2298766672245	36.461	0.55945	37.232	36.953	37.513	0.7709					20	10	2	0	0	0	0.010037	1	13277	13277		96.285	65.648	1	7162600			9008	9482	6413	6464	8789	8789					-0.07956031032176725
EEIETPDCEL	10	Unmodified	_EEIETPDCEL_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MSMS	A375_MHC_IP_R1	1	589.21826171875	2	589.250094	1176.48563	-0.30702	-0.00018091	-1.2695	-0.00074803	-1.5765	-0.00092895	589.249536490429	37.674	0.3567	37.674	37.556	37.913	0					9	6	2	0	0	0	0.53946	1	12687	12687		25.399	13.759	1	1936000	+		9009	21924	6414	6465	8790	8790					-0.09554852423912052
EEIETPDCEL	10	Unmodified	_EEIETPDCEL_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	589.250094	1176.48563	-0.30702	-0.00018091	-1.2695	-0.00074803	-1.5765	-0.00092895	589.249536490429	37.674	0.3567	37.674	37.556	37.913	0	-0.043459	-0.00043255	NaN	25.399	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1936000	+		9010	21924	6414	6465							-0.09554852423912052
EEIETPDCEL	10	Unmodified	_EEIETPDCEL_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MATCH	A375_MHC_IP_R2	2		2	589.250094	1176.48563	-1.2314	-0.00072558	-0.67101	-0.00039539	-1.9024	-0.001121	589.2497713073143	36.99	0.35351	37.761	37.615	37.968	0.7709	0.043459	0.00027272	NaN	25.399	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1418700	+		9011	21924	6414	6465							-0.09554852423912052
EEIFGTIGM	9	Oxidation (M)	_EEIFGTIGM(Oxidation (M))_		EEIFGTIGM(1)		EEIFGTIGM(120)	0	0	1		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-MSMS	A375_MHC_IP_R1	1	507.1364440917969	2	506.736425	1011.4583	-0.58891	-0.00029842	-0.25694	-0.0001302	-0.84585	-0.00042862	506.73630276170485	91.072	1.824	91.072	90.387	92.211	0					104	35	4	0	0	0	0.0098824	1	33319	33319		117.6	43.176	1	36204000			9012	4043	6415	6466	8791	8791		211			-0.046972911736247625
EEIFGTIGM	9	Oxidation (M)	_EEIFGTIGM(Oxidation (M))_		EEIFGTIGM(1)		EEIFGTIGM(48)	0	0	1		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-MSMS	A375_MHC_IP_R1	1	1013.3662109375	1	1012.46557	1011.4583	0.2481	0.00025119	0.080117	8.1116E-05	0.32821	0.00033231	1012.4655884291454	97.902	2.8931	97.902	96.529	99.422	0					109	56	2	0	0	0	0.11296	1	35535	35535		48.346	29.089	1	2981700			9013	4043	6415	6466	8792	8792		211			-0.046972911736247625
EEIFGTIGM	9	Oxidation (M)	_EEIFGTIGM(Oxidation (M))_		EEIFGTIGM(1)		EEIFGTIGM(89)	0	0	1		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-MSMS	A375_MHC_IP_R1	1	506.70782470703125	2	506.736425	1011.4583	-0.33023	-0.00016734	-0.063746	-3.2302E-05	-0.39398	-0.00019964	506.73637350480476	97.237	4.8168	97.237	96.171	100.99	0					159	94	2	0	0	0	0.015336	3	35821	35821;36315;36780		89.427	41.081	1	4995100			9014	4043	6415	6466	8793;8794;8795	8793		211			-0.046972911736247625
EEIFGTIGM	9	Oxidation (M)	_EEIFGTIGM(Oxidation (M))_		EEIFGTIGM(1)		EEIFGTIGM(210)	0	0	1		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-MSMS	A375_MHC_IP_R2	2	507.1742248535156	2	506.736425	1011.4583	-0.63494	-0.00032175	-0.06139	-3.1108E-05	-0.69633	-0.00035286	506.7364153496312	90.48	1.7263	91.214	90.496	92.222	0.73451					102	33	4	0	0	0	0.00025815	5	34350	34350;34352;34457;34468;34727		205.82	116.91	1	36806000			9015	4043	6415	6466	8796;8797;8798;8799;8800	8796		211			-0.046972911736247625
EEIFGTIGM	9	Oxidation (M)	_EEIFGTIGM(Oxidation (M))_		EEIFGTIGM(1)		EEIFGTIGM(100)	0	0	1		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-MSMS	A375_MHC_IP_R2	2	506.6715087890625	2	506.736425	1011.4583	-0.76026	-0.00038525	0.11752	5.9549E-05	-0.64275	-0.0003257	506.73646504352337	96.99	5.7984	97.745	96.403	102.2	0.75586					190	113	2	0	0	0	0.0091485	1	37136	37136		101.72	37.486	1	4603000			9016	4043	6415	6466	8801	8801		211			-0.046972911736247625
EEIFGTIGM	9	Oxidation (M)	_EEIFGTIGM(Oxidation (M))_		EEIFGTIGM(1)		EEIFGTIGM(100)	0	0	1		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-MSMS	A375_MHC_IP_R2	2	1012.8685302734375	1	1012.46557	1011.4583	-0.052	-5.2648E-05	0.037493	3.796E-05	-0.014507	-1.4688E-05	1012.4656508285652	96.922	3.6564	97.678	96.962	100.62	0.75587					103	71	2	0	0	0	0.0090669	1	37707	37707		100.37	56.513	1	2805900			9017	4043	6415	6466	8802	8802		211			-0.046972911736247625
EEIFGTIGM	9	Unmodified	_EEIFGTIGM_					0	0	0		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-MSMS	A375_MHC_IP_R1	1	499.13848876953125	2	498.738968	995.463383	-0.25107	-0.00012522	0.18126	9.0399E-05	-0.069815	-3.482E-05	498.73897622985237	117.94	0.55733	117.94	117.66	118.22	0					18	10	2	0	0	0	0.021919	1	43350	43350		81.864	37.457	1	11069000			9018	4043	6415	6467	8803	8803					-0.034529873110159315
EEIFGTIGM	9	Unmodified	_EEIFGTIGM_					0	0	0		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-MSMS	A375_MHC_IP_R2	2	499.13922119140625	2	498.738968	995.463383	-0.39704	-0.00019802	0.80569	0.00040183	0.40866	0.00020381	498.7391961288074	117.17	0.50696	117.83	117.58	118.09	0.65961					23	9	3	0	0	0	0.0096264	1	44282	44282		109.63	56.054	1	12379000			9019	4043	6415	6467	8804	8804					-0.034529873110159315
EEIFGTIGM	9	Unmodified	_EEIFGTIGM_					0	0	0		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-SECPEP	A375_MHC_IP_R2	2	996.312744140625	1	996.47066	995.463383	0.14387	0.00014336	0.8668	0.00086374	1.0107	0.0010071	996.4715430235234	117.21	0.81174	117.87	117.48	118.29	0.65961					28	15	3	0	0	0	0.0091148	1	44339	44339		156.16	98.685	1	26136000			9020	4043	6415	6467	8805	8805					-0.034529873110159315
EEIFGTIGM	9	Unmodified	_EEIFGTIGM_					0	0	0		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-MATCH	A375_MHC_IP_R1	1		1	996.47066	995.463383	0.33877	0.00033758	0.59942	0.0005973	0.93819	0.00093488	996.4713558347194	117.94	0.60764	117.94	117.66	118.27	0	0.033877	-9.7942E-05	NaN	156.16	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45468000			9021	4043	6415	6467							-0.034529873110159315
EEIFHDDDA	9	Unmodified	_EEIFHDDDA_					0	0	0		ENST00000526500.5_1_11:111859671-111889757:+|nuORF;nc|ENSG00000150764|Q155Q3-2|DIXDC1;ENSG00000150764|ENST00000440460|DIXDC1;ENST00000526418.1_1_11:111888489-111889757:+|nuORF	ENST00000526500.5_1_11:111859671-111889757:+|nuORF	ENST00000526500.5_1_11:111859671-111889757:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	546.1373291015625	2	545.719818	1089.42508	-1.1457	-0.00062525	-0.1618	-8.8299E-05	-1.3075	-0.00071355	545.7198000490655	59.932	0.60743	60.679	60.349	60.957	0.74714					24	11	3	0	0	0	0.63811	1	22588	22588		12.532	1.7076	1	4147200			9022	5862	6416	6468	8806	8806					-0.11605201692009359
EEIFKIKA	8	Unmodified	_EEIFKIKA_					0	0	0		ENSG00000198162|ENST00000356554|MAN1A2;MAN1A2|p.A520Gfs*7|1|0.13|ENSG00000198162|chr1:117499435-117499436|-/GAGC|frameshift_variant	ENSG00000198162|ENST00000356554|MAN1A2	ENSG00000198162|ENST00000356554|MAN1A2	MULTI-SECPEP	A375_MHC_IP_R1	1	489.9441223144531	2	489.286943	976.559333	-0.31446	-0.00015386	-3.7865	-0.0018527	-4.101	-0.0020066	489.2868832588009	40.848	0.25121	40.848	40.712	40.963	0					10	4	3	0	0	0	0.91495	1	14013	14013		18.135	7.3111	1	1353000			9023	9235	6417	6469	8807	8807					0.07011528591374372
EEIFKIKA	8	Unmodified	_EEIFKIKA_					0	0	0		ENSG00000198162|ENST00000356554|MAN1A2;MAN1A2|p.A520Gfs*7|1|0.13|ENSG00000198162|chr1:117499435-117499436|-/GAGC|frameshift_variant	ENSG00000198162|ENST00000356554|MAN1A2	ENSG00000198162|ENST00000356554|MAN1A2	MULTI-MATCH	A375_MHC_IP_R2	2		2	489.286943	976.559333	-0.60872	-0.00029784	-1.8889	-0.00092423	-2.4977	-0.0012221	489.2868796989666	40.024	0.35422	40.798	40.575	40.93	0.77451	-0.024989	0.00059169	NaN	18.135	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	858980			9024	9235	6417	6469							0.07011528591374372
EEIFSLHGF	9	Unmodified	_EEIFSLHGF_					0	0	0		nc|ENSG00000138821|Q9C0K1-2|SLC39A8;nc|ENSG00000138821|Q9C0K1-3|SLC39A8;ENSG00000138821|ENST00000356736|SLC39A8	nc|ENSG00000138821|Q9C0K1-2|SLC39A8	nc|ENSG00000138821|Q9C0K1-2|SLC39A8	MULTI-SECPEP	A375_MHC_IP_R1	1	540.1636962890625	2	539.763832	1077.51311	-0.58805	-0.00031741	0.17021	9.1871E-05	-0.41784	-0.00022554	539.7637188167137	101.85	0.50655	101.85	101.6	102.1	0					18	9	3	0	0	0	0.054184	1	37412	37412		60.39	20.432	1	1903400			9025	5041	6418	6470	8808	8808					-0.022545363107155936
EEIFSLHGF	9	Unmodified	_EEIFSLHGF_					0	0	0		nc|ENSG00000138821|Q9C0K1-2|SLC39A8;nc|ENSG00000138821|Q9C0K1-3|SLC39A8;ENSG00000138821|ENST00000356736|SLC39A8	nc|ENSG00000138821|Q9C0K1-2|SLC39A8	nc|ENSG00000138821|Q9C0K1-2|SLC39A8	MULTI-SECPEP	A375_MHC_IP_R2	2	540.1639404296875	2	539.763832	1077.51311	-0.72063	-0.00038897	0.55776	0.00030106	-0.16287	-8.7913E-05	539.7640463686932	101.06	0.56402	101.83	101.55	102.11	0.76428					22	10	3	0	0	0	0.043556	1	38317	38317		67.344	38.857	1	2143000			9026	5041	6418	6470	8809	8809					-0.022545363107155936
EEIFVSKKL	9	Unmodified	_EEIFVSKKL_					0	0	0		nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	MULTI-SECPEP	A375_MHC_IP_R1	1	547.169921875	2	546.818607	1091.62266	-0.64843	-0.00035457	1.4149	0.00077371	0.76651	0.00041914	547.3211634291612	41.931	0.25522	41.931	41.777	42.032	0					7	4	2	0	0	0	0.59927	1	14543	14543		19.362	8.538	1	1198700			9027	2013	6419	6471	8810	8810					0.08051469308611559
EEIGAVGGIDY	11	Unmodified	_EEIGAVGGIDY_					0	0	0		ENSG00000118496|ENST00000237281|FBXO30	ENSG00000118496|ENST00000237281|FBXO30	ENSG00000118496|ENST00000237281|FBXO30	MULTI-MSMS	A375_MHC_IP_R1	1	561.893798828125	2	561.769311	1121.52407	-0.66809	-0.00037531	1.5224	0.00085523	0.85429	0.00047991	561.7694560542241	85.845	0.35548	85.845	85.667	86.022	0					10	6	2	0	0	0	0.57844	1	31465	31465		24.991	4.5764	1	880610			9028	3544	6420	6472	8811	8811					-0.03183178727090308
EEIGAVGGIDY	11	Unmodified	_EEIGAVGGIDY_					0	0	0		ENSG00000118496|ENST00000237281|FBXO30	ENSG00000118496|ENST00000237281|FBXO30	ENSG00000118496|ENST00000237281|FBXO30	MSMS	A375_MHC_IP_R2	2	561.7593383789062	2	561.769311	1121.52407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.294	1	86.03	85.53	86.53	0.73601								0	0	0	0.14837	1	32425	32425		21.537	1.1224	1				9029	3544	6420	6472	8812	8812					-0.03183178727090308
EEIGDANLQY	10	Unmodified	_EEIGDANLQY_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MSMS	A375_MHC_IP_R2	2	576.6633911132812	2	576.264393	1150.51423	-0.075187	-4.3328E-05	-0.37927	-0.00021856	-0.45446	-0.00026189	576.2641138302348	69.21	0.50729	69.946	69.626	70.133	0.73511					18	9	2	0	0	0	0.01165	2	26206	26206;26282		114.65	45.544	1	3181700			9030	8815	6421	6473	8813;8814	8813					-0.05500366732485418
EEIGDLKRRL	10	Unmodified	_EEIGDLKRRL_					0	0	0		SPECC1L-MED15|5|fusion;SPECC1L-MED15|1|fusion;SPECC1L-MED15|6|fusion;SPECC1L-MED15|2|fusion;nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L	SPECC1L-MED15|5|fusion	SPECC1L-MED15|5|fusion	MULTI-MSMS	A375_MHC_IP_R1	1	410.6384582519531	3	410.238455	1227.69353	-0.024537	-1.0066E-05	0.39871	0.00016357	0.37417	0.0001535	410.2387487125117	34.57	0.50727	34.57	34.353	34.861	0					19	9	3	0	0	0	0.33265	1	11455	11455		32.898	8.0162	1	2247000			9031	29231	6422	6474	8815	8815					0.08879562346123748
EEIGDLKRRL	10	Unmodified	_EEIGDLKRRL_					0	0	0		SPECC1L-MED15|5|fusion;SPECC1L-MED15|1|fusion;SPECC1L-MED15|6|fusion;SPECC1L-MED15|2|fusion;nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L	SPECC1L-MED15|5|fusion	SPECC1L-MED15|5|fusion	MULTI-MATCH	A375_MHC_IP_R2	2		3	410.238455	1227.69353	-0.51977	-0.00021323	0.3053	0.00012525	-0.21447	-8.7985E-05	410.5728899875776	33.777	0.30367	34.529	34.399	34.702	0.75225	-0.020278	-1.819E-05	NaN	32.898	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2115400			9032	29231	6422	6474							0.08879562346123748
EEIGDTLGGVW	11	Unmodified	_EEIGDTLGGVW_					0	0	0			REV__ENST00000581166.5_1_17:56423373-56423484:-|nuORF	REV__ENST00000581166.5_1_17:56423373-56423484:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	588.706298828125	2	588.282586	1174.55062	-0.48326	-0.00028429	3.408	0.0020049	2.9248	0.0017206	588.2838619842129	53.022	0.252	53.022	52.847	53.099	0					7	4	2	0	0	0	0.90584	1	18835	18835		22.736	3.4793	1	903170	+		9033	26345	6423	6475	8816	8816					-0.029674898357370694
EEIGGTSGGI	10	Unmodified	_EEIGGTSGGI_					0	0	0			REV__tr|U7SU63|U7SU63_FUSNUPrecorrin-6YC5,15-methyltransferase(Decarboxylating),CbiTsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01034PE=4SV=1	REV__tr|U7SU63|U7SU63_FUSNUPrecorrin-6YC5,15-methyltransferase(Decarboxylating),CbiTsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01034PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	919.7171020507812	1	919.436717	918.429441	0.26063	0.00023964	-0.73559	-0.00067632	-0.47495	-0.00043669	919.435934164068	48.335	0.55744	48.335	48.071	48.629	0					18	10	2	0	0	0	0.93961	1	16940	16940		6.2058	0.47393	1	5530000	+		9034	28533	6424	6476	8817	8817					-0.033036924784141775
EEIGGVWL	8	Unmodified	_EEIGGVWL_					0	0	0		ENST00000307522.3_1_19:46916396-46916498:-|nuORF	ENST00000307522.3_1_19:46916396-46916498:-|nuORF	ENST00000307522.3_1_19:46916396-46916498:-|nuORF	MSMS	A375_MHC_IP_R1	1	451.6768493652344	2	451.734543	901.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.596	1	23.596	23.096	24.096	0								0	0	0	0.16876	1	6510	6510		10.183	0	1				9035	10589	6425	6477	8818	8818					-0.0001359288519324764
EEIGKTFKIN	10	Unmodified	_EEIGKTFKIN_					0	0	0		ENSG00000187372|ENST00000341948|PCDHB13	ENSG00000187372|ENST00000341948|PCDHB13	ENSG00000187372|ENST00000341948|PCDHB13	MULTI-MSMS	A375_MHC_IP_R1	1	590.6668090820312	2	589.824421	1177.63429	-0.3342	-0.00019712	0.5138	0.00030305	0.1796	0.00010593	589.8240718772503	60.736	0.61139	60.736	60.464	61.075	0					24	11	3	0	0	0	0.62155	1	21923	21923		19.257	7.0163	1	6205500			9036	8822	6426	6478	8819	8819					0.052576663319541694
EEIGQLVKQM	10	Unmodified	_EEIGQLVKQM_					0	0	0		ENSG00000126088|ENST00000246337|UROD	ENSG00000126088|ENST00000246337|UROD	ENSG00000126088|ENST00000246337|UROD	MULTI-SECPEP	A375_MHC_IP_R1	1	588.2101440429688	2	587.810456	1173.60636	-0.1985	-0.00011668	0.8971	0.00052732	0.6986	0.00041064	587.8110135209228	70.476	0.40924	70.476	70.289	70.698	0					17	7	3	0	0	0	0.81668	1	25580	25580		38.176	28.632	1	2661000			9037	4024	6427	6479	8820	8820					0.026500200802047402
EEIGQLVKQM	10	Oxidation (M)	_EEIGQLVKQM(Oxidation (M))_		EEIGQLVKQM(1)		EEIGQLVKQM(220)	0	0	1		ENSG00000126088|ENST00000246337|UROD	ENSG00000126088|ENST00000246337|UROD	ENSG00000126088|ENST00000246337|UROD	MULTI-SECPEP	A375_MHC_IP_R1	1	596.2079467773438	2	595.807913	1189.60127	0.060762	3.6203E-05	-0.67559	-0.00040252	-0.61482	-0.00036632	595.8078264356933	44.635	0.50824	44.635	44.42	44.928	0					24	9	4	0	0	0	4.6232E-08	1	15583	15583		218.2	158.12	1	3282600			9038	4024	6427	6480	8821	8821		208			0.014057162175731719
EEIGQLVKQM	10	Oxidation (M)	_EEIGQLVKQM(Oxidation (M))_		EEIGQLVKQM(1)		EEIGQLVKQM(190)	0	0	1		ENSG00000126088|ENST00000246337|UROD	ENSG00000126088|ENST00000246337|UROD	ENSG00000126088|ENST00000246337|UROD	MULTI-SECPEP	A375_MHC_IP_R2	2	596.20751953125	2	595.807913	1189.60127	-0.36117	-0.00021519	-0.75124	-0.0004476	-1.1124	-0.00066278	595.8077383470619	43.912	0.45366	44.681	44.43	44.883	0.7691					20	8	3	0	0	0	0.00026359	1	16380	16380		193.29	149.52	1	2835100			9039	4024	6427	6480	8822	8822		208			0.014057162175731719
EEIGSRNFF	9	Unmodified	_EEIGSRNFF_					0	0	0		nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;nc|ENSG00000089159|P49023-3|PXN;ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-4|PXN;ENST00000323871.9_2_12:120650119-120654597:-|nuORF	nc|ENSG00000089159|P49023-2|PXN	nc|ENSG00000089159|P49023-2|PXN	MULTI-SECPEP	A375_MHC_IP_R1	1	550.1644897460938	2	549.764363	1097.51417	-0.621	-0.0003414	0.28396	0.00015611	-0.33703	-0.00018529	549.7646141293528	64.944	2.3405	64.944	64.546	66.887	0					138	45	5	0	0	0	0.011107	1	23419	23419		134.3	59.367	1	346000000			9040	1917	6428	6481	8823	8823					-0.030683219418278895
EEIGSRNFF	9	Unmodified	_EEIGSRNFF_					0	0	0		nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;nc|ENSG00000089159|P49023-3|PXN;ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-4|PXN;ENST00000323871.9_2_12:120650119-120654597:-|nuORF	nc|ENSG00000089159|P49023-2|PXN	nc|ENSG00000089159|P49023-2|PXN	MULTI-MSMS	A375_MHC_IP_R2	2	550.8269653320312	2	549.764363	1097.51417	-0.71034	-0.00039052	0.10031	5.5145E-05	-0.61003	-0.00033537	549.7645170291628	64.221	2.7472	64.961	64.496	67.243	0.74023					139	53	5	0	0	0	0.0098183	2	24332	24298;24332		114.65	70.791	1	334910000			9041	1917	6428	6481	8824;8825	8825					-0.030683219418278895
EEIGTPRKF	9	Unmodified	_EEIGTPRKF_					0	0	0		ENSG00000080839|ENST00000373664|RBL1;nc|ENSG00000080839|P28749-2|RBL1;RBL1|p.R338C|1|0.19|ENSG00000080839|chr20:37062155-37062155|G/A|missense_variant	ENSG00000080839|ENST00000373664|RBL1	ENSG00000080839|ENST00000373664|RBL1	MULTI-MSMS	A375_MHC_IP_R1	1	359.9293518066406	3	359.529346	1075.56621	0.030485	1.096E-05	-0.21572	-7.7556E-05	-0.18523	-6.6596E-05	359.52921062828483	27.471	0.7572	27.471	27.229	27.987	0					32	14	4	0	0	0	0.052747	1	8313	8313		63.227	39.438	1	16939000			9042	1723	6429	6482	8826	8826					0.03144841471953441
EEIGTPRKF	9	Unmodified	_EEIGTPRKF_					0	0	0		ENSG00000080839|ENST00000373664|RBL1;nc|ENSG00000080839|P28749-2|RBL1;RBL1|p.R338C|1|0.19|ENSG00000080839|chr20:37062155-37062155|G/A|missense_variant	ENSG00000080839|ENST00000373664|RBL1	ENSG00000080839|ENST00000373664|RBL1	MULTI-MSMS	A375_MHC_IP_R1	1	539.18994140625	2	538.790381	1075.56621	-0.73966	-0.00039852	0.07004	3.7737E-05	-0.66962	-0.00036079	538.790363822155	27.457	0.50527	27.457	27.179	27.684	0					13	9	2	0	0	0	0.042871	1	8338	8338		82.529	42.572	1	8945900			9043	1723	6429	6482	8827	8827					0.03144841471953441
EEIGTPRKF	9	Unmodified	_EEIGTPRKF_					0	0	0		ENSG00000080839|ENST00000373664|RBL1;nc|ENSG00000080839|P28749-2|RBL1;RBL1|p.R338C|1|0.19|ENSG00000080839|chr20:37062155-37062155|G/A|missense_variant	ENSG00000080839|ENST00000373664|RBL1	ENSG00000080839|ENST00000373664|RBL1	MULTI-MSMS	A375_MHC_IP_R2	2	539.1896362304688	2	538.790381	1075.56621	-1.0948	-0.00058988	0.29584	0.00015939	-0.79899	-0.00043049	538.7904603245521	26.831	0.46055	27.491	27.313	27.773	0.65992					18	8	3	0	0	0	0.063448	1	9116	9116		72.968	36.841	1	6198100			9044	1723	6429	6482	8828	8828					0.03144841471953441
EEIGTPRKF	9	Unmodified	_EEIGTPRKF_					0	0	0		ENSG00000080839|ENST00000373664|RBL1;nc|ENSG00000080839|P28749-2|RBL1;RBL1|p.R338C|1|0.19|ENSG00000080839|chr20:37062155-37062155|G/A|missense_variant	ENSG00000080839|ENST00000373664|RBL1	ENSG00000080839|ENST00000373664|RBL1	MULTI-SECPEP	A375_MHC_IP_R2	2	359.92919921875	3	359.529346	1075.56621	-0.4323	-0.00015542	0.23324	8.3857E-05	-0.19906	-7.1567E-05	359.5293867295545	26.861	0.56162	27.521	27.212	27.773	0.65992					30	10	4	0	0	0	0.070665	1	9096	9096		63.227	39.438	1	18431000			9045	1723	6429	6482	8829	8829					0.03144841471953441
EEIGWSYTE	9	Unmodified	_EEIGWSYTE_					0	0	0		ENST00000471837.1_1_7:121513505-121606995:+|nuORF	ENST00000471837.1_1_7:121513505-121606995:+|nuORF	ENST00000471837.1_1_7:121513505-121606995:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	558.1893310546875	2	557.240386	1112.46622	-0.57039	-0.00031784	-0.027349	-1.524E-05	-0.59774	-0.00033308	557.2403150988846	46.858	1.0174	47.619	47.258	48.275	0.76127					44	19	3	0	0	0	0.43185	1	17668	17668		23.148	3.8914	1	12444000			9046	12360	6430	6483	8830	8830					-0.0855144065251352
EEIHATGFNY	10	Unmodified	_EEIHATGFNY_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000141279|P55786-2|NPEPPS;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000274487|A6NEC2-3|NPEPPSL1	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-SECPEP	A375_MHC_IP_R2	2	591.1664428710938	2	590.767103	1179.51965	-1.1572	-0.00068363	0.54849	0.00032403	-0.6087	-0.0003596	590.7674363376491	53.275	0.71572	54.026	53.688	54.404	0.75105					33	13	3	0	0	0	0.018275	1	20060	20060		110.67	82.188	1	26036000			9047	5224	6431	6484	8831	8831					-0.06292643150004551
EEIHGLLGNGA	11	Unmodified	_EEIHGLLGNGA_					0	0	0		CYP4A22|p.D357N|1|0.26|ENSG00000162365|chr1:47144721-47144721|G/A|missense_variant	CYP4A22|p.D357N|1|0.26|ENSG00000162365|chr1:47144721-47144721|G/A|missense_variant	CYP4A22|p.D357N|1|0.26|ENSG00000162365|chr1:47144721-47144721|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	555.6820678710938	2	555.28292	1108.55129	-1.165	-0.00064691	1.3108	0.00072786	0.14578	8.0951E-05	555.2836373854942	59.072	1.0137	59.819	59.235	60.249	0.74714					31	19	3	0	0	0	0.93746	1	22380	22380		8.1555	0	1	2916400			9048	702	6432	6485	8832	8832					0.001353496039428137
EEIHHMDTSI	10	Unmodified	_EEIHHMDTSI_					0	0	0			REV__ENSG00000142224|ENST00000659997|IL19	REV__ENSG00000142224|ENST00000659997|IL19	MSMS	A375_MHC_IP_R1	1	606.1907958984375	2	606.271695	1210.52884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.215	1	29.215	28.715	29.715	0								0	0	0	0.15158	1	9110	9110		14.838	0.93222	1		+		9049	19301	6433	6486	8833	8833					-0.06800617855969904
EEIHKFSGTY	10	Unmodified	_EEIHKFSGTY_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MULTI-SECPEP	A375_MHC_IP_R1	1	606.1907958984375	2	605.790578	1209.5666	-0.74207	-0.00044954	0.60163	0.00036446	-0.14044	-8.508E-05	605.7908860702852	29.155	0.35664	29.155	28.996	29.353	0					9	6	2	0	0	0	0.026565	1	9110	9110		162.31	118.54	1	3276200			9050	6540	6434	6487	8834	8834					-0.029797835988347288
EEIHKFSGTY	10	Unmodified	_EEIHKFSGTY_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MULTI-MSMS	A375_MHC_IP_R2	2	404.59588623046875	3	404.196144	1209.5666	-0.45953	-0.00018574	-0.37369	-0.00015104	-0.83322	-0.00033678	404.19610912206497	28.48	0.30369	29.159	28.96	29.263	0.67857					10	5	3	0	0	0	0.6502	1	9856	9856		10.899	2.1472	1	5549600			9051	6540	6434	6487	8835	8835					-0.029797835988347288
EEIHKFSGTY	10	Unmodified	_EEIHKFSGTY_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	404.196144	1209.5666	-0.86021	-0.00034769	0.97903	0.00039572	0.11882	4.8027E-05	404.1964630912754	29.15	0.3575	29.15	28.945	29.302	0	-0.0045083	0.00014034	NaN	10.899	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5131300			9052	6540	6434	6487							-0.029797835988347288
EEIHKFSGTY	10	Unmodified	_EEIHKFSGTY_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MULTI-MATCH	A375_MHC_IP_R2	2		2	605.790578	1209.5666	-0.88983	-0.00053905	0.17003	0.000103	-0.7198	-0.00043605	605.7905103105244	28.444	0.2035	29.123	29.01	29.214	0.67857	-0.016045	-0.00031306	NaN	162.31	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3072300			9053	6540	6434	6487							-0.029797835988347288
EEIHPCWE	8	Unmodified	_EEIHPCWE_					0	0	0			REV__ENST00000595973.2_1_19:18493140-18496906:+|nuORF	REV__ENST00000595973.2_1_19:18493140-18496906:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	522.2106323242188	2	521.718567	1041.42258	-0.59542	-0.00031064	1.2552	0.00065484	0.65974	0.0003442	521.7195782850846	36.279	0.35507	36.279	36.084	36.439	0					9	6	2	0	0	0	0.77123	1	12083	12083		14.582	1.0738	1	1248400	+		9054	26470	6435	6488	8836	8836					-0.09647328630649099
EEIHPCWE	8	Unmodified	_EEIHPCWE_					0	0	0			REV__ENST00000595973.2_1_19:18493140-18496906:+|nuORF	REV__ENST00000595973.2_1_19:18493140-18496906:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	521.718567	1041.42258	-0.59542	-0.00031064	1.2552	0.00065484	0.65974	0.0003442	521.7195782850846	36.279	0.35507	36.279	36.084	36.439	0	-0.057593	-0.00023932	NaN	14.582	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1248400	+		9055	26470	6435	6488							-0.09647328630649099
EEIHPCWE	8	Unmodified	_EEIHPCWE_					0	0	0			REV__ENST00000595973.2_1_19:18493140-18496906:+|nuORF	REV__ENST00000595973.2_1_19:18493140-18496906:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	521.718567	1041.42258	-0.80726	-0.00042116	1.6609	0.00086654	0.85368	0.00044538	521.7195583126424	35.63	0.40496	36.394	36.132	36.537	0.76338	0.057593	0.00018408	NaN	14.582	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1048100	+		9056	26470	6435	6488							-0.09647328630649099
EEIIEEEEFE	10	Unmodified	_EEIIEEEEFE_					0	0	0			REV__tr|U7SRF2|U7SRF2_FUSNUProteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01579PE=4SV=1	REV__tr|U7SRF2|U7SRF2_FUSNUProteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01579PE=4SV=1	MSMS	A375_MHC_IP_R2	2	648.2295532226562	2	648.279906	1294.54526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.157	1	32.894	32.394	33.394	0.73692								0	0	0	0.15158	1	11417	11417		14.838	0.43289	1		+		9057	28396	6436	6489	8837	8837					-0.09023258208912921
EEIIIKKEV	9	Unmodified	_EEIIIKKEV_					0	0	0		ENST00000470308.1_1_13:46575591-46585648:-|nuORF;nc|ENSG00000123200|Q5T200-2|ZC3H13;nc|ENSG00000123200|Q5T200|ZC3H13;ENSG00000123200|ENST00000679008|ZC3H13	ENST00000470308.1_1_13:46575591-46585648:-|nuORF	ENST00000470308.1_1_13:46575591-46585648:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	367.95684814453125	3	367.556902	1099.64888	0.23978	8.8132E-05	0.46805	0.00017203	0.70783	0.00026017	367.5570194611686	34.077	0.8597	34.077	33.748	34.608	0					34	16	3	0	0	0	0.57304	1	11177	11177		17.863	8.0989	1	6520500			9058	3834	6437	6490	8838	8838					0.10303738480092761
EEIIIKKEV	9	Unmodified	_EEIIIKKEV_					0	0	0		ENST00000470308.1_1_13:46575591-46585648:-|nuORF;nc|ENSG00000123200|Q5T200-2|ZC3H13;nc|ENSG00000123200|Q5T200|ZC3H13;ENSG00000123200|ENST00000679008|ZC3H13	ENST00000470308.1_1_13:46575591-46585648:-|nuORF	ENST00000470308.1_1_13:46575591-46585648:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2313842773438	2	550.831714	1099.64888	-0.55284	-0.00030452	0.10485	5.7753E-05	-0.448	-0.00024677	550.8317335644022	34.058	0.35471	34.058	33.898	34.253	0					14	6	3	0	0	0	0.11887	1	11210	11210		63.227	13.673	1	3553200			9059	3834	6437	6490	8839	8839					0.10303738480092761
EEIIIKKEV	9	Unmodified	_EEIIIKKEV_					0	0	0		ENST00000470308.1_1_13:46575591-46585648:-|nuORF;nc|ENSG00000123200|Q5T200-2|ZC3H13;nc|ENSG00000123200|Q5T200|ZC3H13;ENSG00000123200|ENST00000679008|ZC3H13	ENST00000470308.1_1_13:46575591-46585648:-|nuORF	ENST00000470308.1_1_13:46575591-46585648:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	367.9566650390625	3	367.556902	1099.64888	-0.13415	-4.9309E-05	0.35564	0.00013072	0.22149	8.1409E-05	367.5570014237467	33.303	0.60987	34.056	33.84	34.45	0.75225					27	11	4	0	0	0	0.23894	1	11905	11905		31.636	7.8347	1	7944400			9060	3834	6437	6490	8840	8840					0.10303738480092761
EEIIIKKEV	9	Unmodified	_EEIIIKKEV_					0	0	0		ENST00000470308.1_1_13:46575591-46585648:-|nuORF;nc|ENSG00000123200|Q5T200-2|ZC3H13;nc|ENSG00000123200|Q5T200|ZC3H13;ENSG00000123200|ENST00000679008|ZC3H13	ENST00000470308.1_1_13:46575591-46585648:-|nuORF	ENST00000470308.1_1_13:46575591-46585648:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	551.2314453125	2	550.831714	1099.64888	-1.0763	-0.00059287	0.41265	0.0002273	-0.66366	-0.00036557	550.8319094965678	33.281	0.45708	34.033	33.891	34.348	0.75225					13	8	2	0	0	0	0.16595	1	11937	11937		45.74	7.5643	1	3123700			9061	3834	6437	6490	8841	8841					0.10303738480092761
EEIILKEEE	9	Unmodified	_EEIILKEEE_					0	0	0			REV__nc|ENSG00000129675|Q15052-2|ARHGEF6	REV__nc|ENSG00000129675|Q15052-2|ARHGEF6	MULTI-SECPEP	A375_MHC_IP_R2	2	566.6691284179688	2	566.292619	1130.57069	-0.36293	-0.00020552	0.93388	0.00052885	0.57095	0.00032332	566.2933217383743	45.985	0.65495	46.75	46.353	47.008	0.76519					15	12	2	0	0	0	0.62767	1	17186	17186		23.148	0	1	1326200	+		9062	18505	6438	6491	8842	8842					0.010622611041981145
EEIILTFGNK	10	Unmodified	_EEIILTFGNK_					0	0	0		tr|U7T2A5|U7T2A5_FUSNUDephospho-CoAkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaEPE=3SV=1	tr|U7T2A5|U7T2A5_FUSNUDephospho-CoAkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaEPE=3SV=1	tr|U7T2A5|U7T2A5_FUSNUDephospho-CoAkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaEPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	581.2245483398438	2	582.318971	1162.62339	-0.07109	-4.1397E-05	0.076125	4.4329E-05	0.0050354	2.9322E-06	582.31965078533	51.582	0.35493	51.582	51.373	51.728	0					10	5	3	0	0	0	0.70651	1	18366	18366		9.3831	0	1	2117400			9063	29927	6439	6492	8843	8843					0.04858263957657982
EEIILTFGNK	10	Unmodified	_EEIILTFGNK_					0	0	0		tr|U7T2A5|U7T2A5_FUSNUDephospho-CoAkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaEPE=3SV=1	tr|U7T2A5|U7T2A5_FUSNUDephospho-CoAkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaEPE=3SV=1	tr|U7T2A5|U7T2A5_FUSNUDephospho-CoAkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaEPE=3SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	582.318971	1162.62339	-0.48184	-0.00028058	1.1846	0.00068982	0.70277	0.00040923	582.3199774326098	50.679	0.25339	51.433	51.311	51.564	0.75406	-0.074747	0.00037043	NaN	9.3831	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1198000			9064	29927	6439	6492							0.04858263957657982
EEIIPGFKF	9	Unmodified	_EEIIPGFKF_					0	0	0		ENSG00000119943|ENST00000370575|PYROXD2;ENST00000483923.5_1_10:100150731-100167745:-|nuORF	ENSG00000119943|ENST00000370575|PYROXD2	ENSG00000119943|ENST00000370575|PYROXD2	MULTI-MSMS	A375_MHC_IP_R2	2	540.6917114257812	2	540.292225	1078.5699	-0.83872	-0.00045315	0.41906	0.00022641	-0.41966	-0.00022674	540.2922603750868	108.21	0.40903	108.97	108.81	109.22	0.75436					11	7	2	0	0	0	0.12592	1	40882	40882		46.021	46.021	1	1242000			9065	3638	6440	6493	8844	8844					0.03375511245803864
EEIKEFAAGY	10	Unmodified	_EEIKEFAAGY_					0	0	0		ENST00000589115.5_1_19:1105440-1106426:+|nuORF;ENST00000588919.5_1_19:1105440-1106636:+|nuORF;nc|ENSG00000167468|P36969-2|GPX4;ENSG00000167468|ENST00000354171|GPX4	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	579.1807250976562	2	578.779679	1155.5448	-0.10485	-6.0685E-05	0.91794	0.00053129	0.81309	0.0004706	578.780343450618	56.676	0.96679	56.676	56.347	57.313	0					30	18	2	0	0	0	0.081287	1	20327	20327		90.135	54.008	1	3675800			9066	7185	6441	6494	8845	8845					-0.02674588347417739
EEIKEKEKDT	10	Unmodified	_EEIKEKEKDT_					0	0	0			REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	MSMS	A375_MHC_IP_R2	2	416.9278564453125	3	416.882114	1247.62451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.442	1	40.217	39.717	40.717	0.77451								0	0	0	0.1524	1	14563	14563		7.9454	0	1		+		9067	28309	6442	6495	8846	8846					0.010604335358948447
EEIKENQKY	9	Unmodified	_EEIKENQKY_					0	0	0		ENST00000465196.5_1_13:96635825-96665653:-|nuORF	ENST00000465196.5_1_13:96635825-96665653:-|nuORF	ENST00000465196.5_1_13:96635825-96665653:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	590.6674194335938	2	590.79586	1179.57717	-0.36868	-0.00021781	-0.28279	-0.00016707	-0.65147	-0.00038489	590.7955796689102	61.159	0.45935	61.159	60.922	61.382	0					15	8	2	0	0	0	0.46038	1	21942	21942		21.747	2.4897	1	3009800			9068	12236	6443	6496	8847	8847					-0.005438009444333147
EEIKGLASW	9	Unmodified	_EEIKGLASW_					0	0	0		ENSG00000165661|ENST00000358701|QSOX2	ENSG00000165661|ENST00000358701|QSOX2	ENSG00000165661|ENST00000358701|QSOX2	MULTI-SECPEP	A375_MHC_IP_R1	1	517.1710205078125	2	516.771657	1031.52876	-0.38244	-0.00019763	-0.42008	-0.00021708	-0.80252	-0.00041472	516.7715622865192	71.322	0.4081	71.322	71.108	71.516	0					12	7	2	0	0	0	0.061442	1	25913	25913		63.961	20.102	1	2832500			9069	6976	6444	6497	8848	8848					0.014257502063401262
EEIKKETGF	9	Unmodified	_EEIKKETGF_					0	0	0		ENSG00000187446|ENST00000334660|CHP1	ENSG00000187446|ENST00000334660|CHP1	ENSG00000187446|ENST00000334660|CHP1	MULTI-MSMS	A375_MHC_IP_R1	1	541.181640625	2	540.782222	1079.54989	-0.84837	-0.00045879	0.0028819	1.5585E-06	-0.84549	-0.00045723	540.7820853777864	24.083	0.60855	24.083	23.889	24.498	0					19	11	3	0	0	0	0.066859	1	6770	6770		57.722	23.32	1	12751000			9070	8824	6445	6498	8849	8849					0.013297155152031337
EEIKKETGF	9	Unmodified	_EEIKKETGF_					0	0	0		ENSG00000187446|ENST00000334660|CHP1	ENSG00000187446|ENST00000334660|CHP1	ENSG00000187446|ENST00000334660|CHP1	MULTI-MSMS	A375_MHC_IP_R2	2	541.1815185546875	2	540.782222	1079.54989	-1.1422	-0.00061769	0.05157	2.7888E-05	-1.0907	-0.00058981	540.7821565880174	23.424	0.30341	24.054	23.928	24.232	0.63014					11	5	3	0	0	0	0.035419	1	7547	7547		70.332	35.93	1	13825000			9071	8824	6445	6498	8850	8850					0.013297155152031337
EEIKKETGF	9	Unmodified	_EEIKKETGF_					0	0	0		ENSG00000187446|ENST00000334660|CHP1	ENSG00000187446|ENST00000334660|CHP1	ENSG00000187446|ENST00000334660|CHP1	MULTI-SECPEP	A375_MHC_IP_R2	2	540.1629638671875	2	540.782222	1079.54989	-1.088	-0.00058835	0.004574	2.4735E-06	-1.0834	-0.00058587	540.7822202868983	23.966	0.30713	24.596	24.435	24.742	0.63014					8	5	2	0	0	0	0.65527	1	7805	7805		17.113	0	1	2332000			9072	8824	6445	6498	8851	8851					0.013297155152031337
EEIKKIIRF	9	Unmodified	_EEIKKIIRF_					0	0	0		ENSG00000173597|ENST00000310613|SULT1B1	ENSG00000173597|ENST00000310613|SULT1B1	ENSG00000173597|ENST00000310613|SULT1B1	MULTI-MSMS	A375_MHC_IP_R1	1	392.97650146484375	3	392.576408	1174.70739	0.66389	0.00026063	-0.27564	-0.00010821	0.38825	0.00015242	392.5762501983098	44.831	1.0106	44.831	44.575	45.585	0					31	19	4	0	0	0	0.062639	2	15640	15640;15673		59.368	25.923	1	9429600			9073	7813	6446	6499	8852;8853	8852					0.12702839845201197
EEIKKIIRF	9	Unmodified	_EEIKKIIRF_					0	0	0		ENSG00000173597|ENST00000310613|SULT1B1	ENSG00000173597|ENST00000310613|SULT1B1	ENSG00000173597|ENST00000310613|SULT1B1	MULTI-MSMS	A375_MHC_IP_R2	2	392.97637939453125	3	392.576408	1174.70739	0.016816	6.6017E-06	-0.079552	-3.123E-05	-0.062736	-2.4629E-05	392.5763406212969	43.856	0.60503	44.625	44.278	44.883	0.7691					32	11	4	0	0	0	0.13728	2	16340	16340;16400		43.982	17.596	1	8752600			9074	7813	6446	6499	8854;8855	8854					0.12702839845201197
EEIKKKILY	9	Unmodified	_EEIKKKILY_					0	0	0		COX20|p.G103S|1|0.28|ENSG00000203667|chr1:244843126-244843126|G/A|missense_variant;ENSG00000203667|ENST00000411948|COX20;nc|ENSG00000203667|Q5RI15-2|COX20	COX20|p.G103S|1|0.28|ENSG00000203667|chr1:244843126-244843126|G/A|missense_variant	COX20|p.G103S|1|0.28|ENSG00000203667|chr1:244843126-244843126|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	582.6873779296875	2	582.355357	1162.69616	-0.77394	-0.00045071	0.051929	3.0241E-05	-0.72201	-0.00042047	582.3552510418612	24.867	0.20358	25.511	25.364	25.568	0.64368					6	3	2	0	0	0	0.71541	1	8198	8198		11.64	0	1	2197300			9075	644	6447	6500	8856	8856					0.12132017751082458
EEIKKNYRY	9	Unmodified	_EEIKKNYRY_					0	0	0		nc|ENSG00000106477|Q9BYV8-2|CEP41;SEMA3E-CEP41|1|fusion;ENSG00000106477|ENST00000223208|CEP41;SEMA3E-CEP41|2|fusion;ENST00000498527.5_1_7:130050951-130080846:-|nuORF;ENST00000482730.1_1_7:130051992-130056799:-|nuORF	nc|ENSG00000106477|Q9BYV8-2|CEP41	nc|ENSG00000106477|Q9BYV8-2|CEP41	MULTI-SECPEP	A375_MHC_IP_R1	1	415.287353515625	3	414.887422	1241.64044	0.12933	5.3657E-05	0.27601	0.00011451	0.40534	0.00016817	414.88736965843543	19.243	0.096786	19.243	19.221	19.318	0					5	3	2	0	0	0	0.74875	1	4686	4686		7.1017	2.9122	1	31613000			9076	2693	6448	6501	8857	8857					0.029281845634614
EEIKKRKKA	9	Unmodified	_EEIKKRKKA_					0	0	0		nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2	nc|ENSG00000125868|P60981-2|DSTN;nc|ENSG00000165410|Q9Y281-3|CFL2	nc|ENSG00000165410|Q9Y281-3|CFL2	MULTI-SECPEP	A375_MHC_IP_R2	2	565.62646484375	2	565.356222	1128.69789	-0.87882	-0.00049685	0.35233	0.00019919	-0.52649	-0.00029765	565.356403136481	26.037	0.20322	26.697	26.602	26.805	0.65992					5	3	2	0	0	0	0.80005	1	8755	8755		4.756	0	1	1089800			9077	6948;4001	6449	6502	8858	8858					0.13869071559702206
EEIKQIWQQY	10	Unmodified	_EEIKQIWQQY_					0	0	0		ENSG00000123472|ENST00000574428|ATPAF1;ENST00000474020.5_1_1:47118240-47133739:-|nuORF;nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1	ENSG00000123472|ENST00000574428|ATPAF1	ENSG00000123472|ENST00000574428|ATPAF1	MULTI-SECPEP	A375_MHC_IP_R1	1	683.2459106445312	2	682.845884	1363.67722	-0.66789	-0.00045606	0.39425	0.00026921	-0.27364	-0.00018685	682.8465821360134	76.094	0.65697	76.094	75.764	76.421	0					27	12	3	0	0	0	2.0631E-05	1	27715	27715		209.87	134.11	1	5558900			9078	3849	6450	6503	8859	8859					0.009924363893787813
EEIKQIWQQY	10	Unmodified	_EEIKQIWQQY_					0	0	0		ENSG00000123472|ENST00000574428|ATPAF1;ENST00000474020.5_1_1:47118240-47133739:-|nuORF;nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1	ENSG00000123472|ENST00000574428|ATPAF1	ENSG00000123472|ENST00000574428|ATPAF1	MULTI-MSMS	A375_MHC_IP_R2	2	683.2451171875	2	682.845884	1363.67722	-0.67326	-0.00045973	0.12876	8.7923E-05	-0.5445	-0.00037181	682.8461531557202	75.406	0.66237	76.147	75.825	76.487	0.74052					30	12	3	0	0	0	3.3034E-05	2	28610	28594;28610		168.54	118.98	1	6832800			9079	3849	6450	6503	8860;8861	8861					0.009924363893787813
EEIKQSHSF	9	Unmodified	_EEIKQSHSF_					0	0	0		ENSG00000181555|ENST00000409792|SETD2;nc|ENSG00000181555|Q9BYW2-2|SETD2;nc|ENSG00000181555|Q9BYW2-3|SETD2	ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	MULTI-MSMS	A375_MHC_IP_R1	1	369.2491149902344	3	368.848856	1103.52474	0.21151	7.8015E-05	0.43144	0.00015913	0.64295	0.00023715	368.8489951134114	19.694	0.30603	19.694	19.571	19.877	0					13	5	3	0	0	0	0.51106	1	4974	4974		13.615	9.4254	1	2403500			9080	8351	6451	6504	8862	8862					-0.022883392873836783
EEIKSFREL	9	Unmodified	_EEIKSFREL_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	A375_MHC_IP_R1	1	384.6084289550781	3	384.208273	1149.60299	0.283	0.00010873	-0.16776	-6.4456E-05	0.11524	4.4275E-05	384.2082070650642	42.071	0.76113	42.071	41.725	42.487	0					23	14	3	0	0	0	0.50355	1	14584	14584		19.626	6.0111	1	3579400			9081	3385	6452	6505	8863	8863					0.034170932978668134
EEIKSFREL	9	Unmodified	_EEIKSFREL_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	A375_MHC_IP_R2	2	384.6082458496094	3	384.208273	1149.60299	-0.30912	-0.00011877	0.11721	4.5032E-05	-0.19192	-7.3736E-05	384.2082935317423	41.299	0.55651	42.073	41.845	42.401	0.77451					17	10	2	0	0	0	0.59859	1	15343	15343		14.957	2.7824	1	4094800			9082	3385	6452	6505	8864	8864					0.034170932978668134
EEIKVQPSQF	10	Unmodified	_EEIKVQPSQF_					0	0	0		ENSG00000047621|ENST00000261250|C12orf4	ENSG00000047621|ENST00000261250|C12orf4	ENSG00000047621|ENST00000261250|C12orf4	MULTI-SECPEP	A375_MHC_IP_R1	1	603.1898803710938	2	602.814053	1203.61355	-0.13868	-8.3599E-05	-0.27553	-0.0001661	-0.41421	-0.00024969	602.8138114045613	54.038	0.25219	54.038	53.861	54.113	0					8	4	2	0	0	0	0.24808	1	19304	19304		55.503	29.235	1	1192600			9083	1203	6453	6506	8865	8865					0.01989075952269559
EEIKWQQEL	9	Unmodified	_EEIKWQQEL_					0	0	0		nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	MULTI-SECPEP	A375_MHC_IP_R2	2	602.2056274414062	2	601.806228	1201.5979	-0.37473	-0.00022552	-0.6542	-0.0003937	-1.0289	-0.00061922	602.307022729793	68.513	0.45499	69.248	68.918	69.373	0.73511					14	8	2	0	0	0	0.29257	1	25960	25960		57.722	31.454	1	999870			9084	6534	6454	6507	8866	8866					0.005167894352325675
EEIKWQQEL	9	Unmodified	_EEIKWQQEL_					0	0	0		nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	MULTI-MATCH	A375_MHC_IP_R1	1		2	601.806228	1201.5979	-0.086878	-5.2284E-05	-0.7989	-0.00048078	-0.88578	-0.00053307	601.8060414008455	69.053	0.45632	69.053	68.819	69.275	0	-0.097298	-7.8724E-05	NaN	57.722	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	944200			9085	6534	6454	6507							0.005167894352325675
EEILHKIVKY	10	Unmodified	_EEILHKIVKY_					0	0	0		nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	MULTI-MSMS	A375_MHC_IP_R1	1	424.9833679199219	3	424.583451	1270.72852	0.46471	0.00019731	-0.61809	-0.00026243	-0.15338	-6.5121E-05	424.5832209247159	44.924	0.55707	44.924	44.626	45.183	0					17	10	2	0	0	0	0.15514	1	15708	15708		39.213	33.81	1	5245900			9086	971	6455	6508	8867	8867					0.10398805154090951
EEILHKIVKY	10	Unmodified	_EEILHKIVKY_					0	0	0		nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	MULTI-MSMS	A375_MHC_IP_R2	2	424.9667663574219	3	424.583451	1270.72852	0.0024935	1.0587E-06	-0.26458	-0.00011234	-0.26209	-0.00011128	424.5832621914163	44.088	0.40429	44.858	44.631	45.035	0.7691					19	7	3	0	0	0	0.040108	2	16434	16434;16453		59.052	43.314	1	3978400			9087	971	6455	6508	8868;8869	8868					0.10398805154090951
EEILKVEQKY	10	Unmodified	_EEILKVEQKY_					0	0	0		nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;SET|p.D163*|1|0.21|ENSG00000119335|chr9:128692935-128692936|-/T|frameshift_variant;ENST00000514799.1_1_5:59755891-59756539:-|nuORF;ENST00000553886.1_1_14:51902791-51902986:+|nuORF;ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP	nc|ENSG00000119335|Q01105-3|SET;ENSG00000230667|ENST00000596516|SETSIP	nc|ENSG00000119335|Q01105-3|SET	MULTI-MSMS	A375_MHC_IP_R1	1	427.630859375	3	426.902849	1277.68672	-0.22346	-9.5396E-05	-0.2745	-0.00011719	-0.49797	-0.00021258	426.90293950937775	40.103	0.56138	40.103	39.896	40.458	0					32	10	5	0	0	0	0.71175	1	13697	13697		7.0371	0.41363	1	13484000			9088	3585;9719	6456	6509	8870	8870					0.05898204674917906
EEILKVEQKY	10	Unmodified	_EEILKVEQKY_					0	0	0		nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;SET|p.D163*|1|0.21|ENSG00000119335|chr9:128692935-128692936|-/T|frameshift_variant;ENST00000514799.1_1_5:59755891-59756539:-|nuORF;ENST00000553886.1_1_14:51902791-51902986:+|nuORF;ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP	nc|ENSG00000119335|Q01105-3|SET;ENSG00000230667|ENST00000596516|SETSIP	nc|ENSG00000119335|Q01105-3|SET	MULTI-MSMS	A375_MHC_IP_R1	1	640.2503662109375	2	639.850635	1277.68672	-0.73263	-0.00046877	0.50411	0.00032256	-0.22851	-0.00014621	639.8509838485212	40.094	0.35754	40.094	39.896	40.254	0					14	6	3	0	0	0	0.00047134	1	13762	13762		180.74	114.28	1	4930500			9089	3585;9719	6456	6509	8871	8871					0.05898204674917906
EEILKVEQKY	10	Unmodified	_EEILKVEQKY_					0	0	0		nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;SET|p.D163*|1|0.21|ENSG00000119335|chr9:128692935-128692936|-/T|frameshift_variant;ENST00000514799.1_1_5:59755891-59756539:-|nuORF;ENST00000553886.1_1_14:51902791-51902986:+|nuORF;ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP	nc|ENSG00000119335|Q01105-3|SET;ENSG00000230667|ENST00000596516|SETSIP	nc|ENSG00000119335|Q01105-3|SET	MULTI-SECPEP	A375_MHC_IP_R2	2	427.30267333984375	3	426.902849	1277.68672	-0.27064	-0.00011554	0.031624	1.35E-05	-0.23902	-0.00010204	426.902815275958	39.343	0.55904	40.117	39.914	40.473	0.77451					28	10	4	0	0	0	0.019114	1	14513	14513		128.87	83.925	1	10914000			9090	3585;9719	6456	6509	8872	8872					0.05898204674917906
EEILKVEQKY	10	Unmodified	_EEILKVEQKY_					0	0	0		nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;SET|p.D163*|1|0.21|ENSG00000119335|chr9:128692935-128692936|-/T|frameshift_variant;ENST00000514799.1_1_5:59755891-59756539:-|nuORF;ENST00000553886.1_1_14:51902791-51902986:+|nuORF;ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP	nc|ENSG00000119335|Q01105-3|SET;ENSG00000230667|ENST00000596516|SETSIP	nc|ENSG00000119335|Q01105-3|SET	MULTI-SECPEP	A375_MHC_IP_R2	2	640.2500610351562	2	639.850635	1277.68672	-0.83416	-0.00053374	0.26891	0.00017206	-0.56524	-0.00036167	639.8508342409714	39.396	0.35451	40.17	39.965	40.32	0.77451					14	6	3	0	0	0	0.018883	1	14541	14541		139.32	85.917	1	4247800			9091	3585;9719	6456	6509	8873	8873					0.05898204674917906
EEILRQNY	8	Unmodified	_EEILRQNY_					0	0	0			REV__nc|ENSG00000065613|Q9H2G2-2|SLK	REV__nc|ENSG00000065613|Q9H2G2-2|SLK	MULTI-SECPEP	A375_MHC_IP_R2	2	532.6432495117188	2	532.772188	1063.52982	-0.73992	-0.00039421	-1.431	-0.0007624	-2.1709	-0.0011566	532.7711120187272	30.842	0.35281	31.561	31.417	31.77	0.71857					8	6	2	0	0	0	0.94479	1	10823	10823		19.439	11.529	1	1148800	+		9092	16503	6457	6510	8874	8874					0.0005996457523451681
EEILYNMQQW	10	Unmodified	_EEILYNMQQW_					0	0	0			REV__tr|U7T3B6|U7T3B6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00341PE=4SV=1	REV__tr|U7T3B6|U7T3B6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00341PE=4SV=1	MSMS	A375_MHC_IP_R1	1	677.433837890625	2	677.31082	1352.60709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.757	1	90.757	90.257	91.257	0								0	0	0	0.15308	1	33354	33354		10.824	1.4408	1		+		9093	28765	6458	6511	8875	8875					-0.05511185270756869
EEIMHRPS	8	Unmodified	_EEIMHRPS_					0	0	0			REV__ENSG00000141429|ENST00000269195|GALNT1	REV__ENSG00000141429|ENST00000269195|GALNT1	MSMS	A375_MHC_IP_R1	1	499.8892517089844	2	499.739834	997.465115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.119	1	21.119	20.619	21.619	0								0	0	0	0.16876	1	5509	5509		5.2307	2.2354	1		+		9094	19263	6459	6512	8876	8876					-0.03371933502410229
EEIMTLFY	8	Unmodified	_EEIMTLFY_					0	0	0			REV__ENST00000335670.10_1_15:60784332-60784527:-|nuORF	REV__ENST00000335670.10_1_15:60784332-60784527:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1586303710938	2	523.249169	1044.48378	-0.85211	-0.00044586	1.0643	0.00055687	0.21215	0.00011101	523.7508082188133	23.481	0.30218	24.111	23.878	24.18	0.63014					7	5	2	0	0	0	0.93416	1	7544	7544		14.582	0	1	2841100	+		9095	23673	6460	6513	8877	8877					-0.03667816651204703
EEIMVQGML	9	Unmodified	_EEIMVQGML_					0	0	0		ANK2|p.P3924L|1|0.67|ENSG00000145362|chr4:113373361-113373361|C/T|missense_variant	ANK2|p.P3924L|1|0.67|ENSG00000145362|chr4:113373361-113373361|C/T|missense_variant	ANK2|p.P3924L|1|0.67|ENSG00000145362|chr4:113373361-113373361|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	525.1689453125	2	525.253928	1048.4933	-0.72527	-0.00038095	3.7941	0.0019929	3.0688	0.0016119	525.7584561213174	49.958	0.45895	50.712	50.445	50.904	0.75406					22	8	3	0	0	0	0.55818	1	18814	18814		16.942	2.3606	1	2281000			9096	134	6461	6514	8878	8878					-0.02900371637315402
EEINKIIRDLW	11	Unmodified	_EEINKIIRDLW_					0	0	0		ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50	ENSG00000113522|ENST00000378823|RAD50	ENSG00000113522|ENST00000378823|RAD50	MULTI-SECPEP	A375_MHC_IP_R1	1	477.1423034667969	3	476.933031	1427.77726	-0.43877	-0.00020926	0.65364	0.00031174	0.21488	0.00010248	477.2677873103755	104.93	0.55692	104.93	104.74	105.3	0					13	10	2	0	0	0	0.99819	1	38544	38544		3.5927	3.5927	1	598550			9097	3158	6462	6515	8879	8879					0.08048673723192223
EEINKIIRDLW	11	Unmodified	_EEINKIIRDLW_					0	0	0		ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50	ENSG00000113522|ENST00000378823|RAD50	ENSG00000113522|ENST00000378823|RAD50	MULTI-MATCH	A375_MHC_IP_R2	2		3	476.933031	1427.77726	-0.49372	-0.00023547	0.36652	0.0001748	-0.1272	-6.0667E-05	477.2675762951701	103.87	1.2211	104.63	104.04	105.26	0.76428	-0.14857	-0.00016469	NaN	3.5927	28	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1643300			9098	3158	6462	6515							0.08048673723192223
EEINLHLHPDE	11	Unmodified	_EEINLHLHPDE_					0	0	0			REV__nc|nan|Q5T4I8-2|C6orf52	REV__nc|nan|Q5T4I8-2|C6orf52	MULTI-MSMS	A375_MHC_IP_R1	1	449.6170959472656	3	449.217608	1344.63099	0.051502	2.3136E-05	-0.57569	-0.00025861	-0.52419	-0.00023547	449.2172974892332	71.415	1.0114	71.415	71.108	72.119	0					53	19	4	0	0	0	0.57844	1	25901	25901		19.987	7.1309	1	17596000	+		9099	19006	6463	6516	8880	8880					-0.02753628512709838
EEINLHLHPDE	11	Unmodified	_EEINLHLHPDE_					0	0	0			REV__nc|nan|Q5T4I8-2|C6orf52	REV__nc|nan|Q5T4I8-2|C6orf52	MULTI-MSMS	A375_MHC_IP_R2	2	449.6171569824219	3	449.217608	1344.63099	-0.35757	-0.00016063	-0.39698	-0.00017833	-0.75456	-0.00033896	449.21737433755015	70.734	0.86134	71.468	71.149	72.01	0.73421					47	16	4	0	0	0	0.57844	1	26785	26785		15.538	3.9071	1	26696000	+		9100	19006	6463	6516	8881	8881					-0.02753628512709838
EEINLQRNI	9	Unmodified	_EEINLQRNI_					0	0	0		MCPH1|p.Y425Lfs*8|1|0.42|ENSG00000147316|chr8:6444994-6444995|-/T|frameshift_variant;nc|ENSG00000147316|Q8NEM0-2|MCPH1;nc|ENSG00000147316|Q8NEM0-3|MCPH1;ENSG00000147316|ENST00000344683|MCPH1	MCPH1|p.Y425Lfs*8|1|0.42|ENSG00000147316|chr8:6444994-6444995|-/T|frameshift_variant	MCPH1|p.Y425Lfs*8|1|0.42|ENSG00000147316|chr8:6444994-6444995|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	565.2039184570312	2	564.80402	1127.59349	-0.32792	-0.00018521	0.57259	0.0003234	0.24468	0.00013819	564.8041073072102	50.075	0.61438	50.075	49.793	50.408	0					16	11	2	0	0	0	0.070665	1	17743	17743		60.074	37.338	1	3601200			9101	5676	6464	6517	8882	8882					0.03479325012312984
EEINLQRNI	9	Unmodified	_EEINLQRNI_					0	0	0		MCPH1|p.Y425Lfs*8|1|0.42|ENSG00000147316|chr8:6444994-6444995|-/T|frameshift_variant;nc|ENSG00000147316|Q8NEM0-2|MCPH1;nc|ENSG00000147316|Q8NEM0-3|MCPH1;ENSG00000147316|ENST00000344683|MCPH1	MCPH1|p.Y425Lfs*8|1|0.42|ENSG00000147316|chr8:6444994-6444995|-/T|frameshift_variant	MCPH1|p.Y425Lfs*8|1|0.42|ENSG00000147316|chr8:6444994-6444995|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	565.2034912109375	2	564.80402	1127.59349	-0.7318	-0.00041332	0.42591	0.00024055	-0.30589	-0.00017277	564.8040365252662	49.382	0.55558	50.139	49.792	50.348	0.75736					17	10	2	0	0	0	0.037185	1	18547	18547		74.929	36.955	1	3375800			9102	5676	6464	6517	8883	8883					0.03479325012312984
EEINQQSQL	9	Unmodified	_EEINQQSQL_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-SECPEP	A375_MHC_IP_R1	1	545.1642456054688	2	544.76456	1087.51457	-0.50677	-0.00027607	1.3024	0.00070952	0.79568	0.00043346	544.7644693569191	37.624	0.61347	37.624	37.402	38.016	0					25	11	4	0	0	0	0.019499	1	12731	12731		93.166	13.57	1	3732200			9103	7534	6465	6518	8884	8884					-0.025689470126280867
EEINRQVTY	9	Unmodified	_EEINRQVTY_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	A375_MHC_IP_R1	1	576.2085571289062	2	576.288202	1150.56185	-0.18077	-0.00010417	-1.5946	-0.00091897	-1.7754	-0.0010231	576.2882519289093	31.378	0.96192	31.378	30.908	31.87	0					58	18	6	0	0	0	0.0015806	1	10102	10102		148.27	88.9	1	52774000			9104	1791	6466	6519	8885	8885					-0.007406677416156526
EEINRQVTY	9	Unmodified	_EEINRQVTY_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	A375_MHC_IP_R2	2	576.6878662109375	2	576.288202	1150.56185	-0.20176	-0.00011627	-0.14439	-8.3212E-05	-0.34615	-0.00019948	576.2880856181836	30.824	0.65783	31.542	31.317	31.974	0.71857					20	12	2	0	0	0	0.010931	1	10828	10828		136.39	77.024	1	50723000			9105	1791	6466	6519	8886	8886					-0.007406677416156526
EEIPANRKI	9	Unmodified	_EEIPANRKI_					0	0	0		nc|ENSG00000158528|Q9ULJ8|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	MULTI-MSMS	A375_MHC_IP_R2	2	357.6045837402344	3	357.204862	1068.59276	-0.54645	-0.00019519	-0.49491	-0.00017679	-1.0414	-0.00037198	357.20478351049377	21.305	0.45741	21.924	21.726	22.184	0.61932					14	8	2	0	0	0	0.4875	1	6702	6702		20.415	5.1661	1	3586000			9106	6310	6467	6520	8887	8887					0.061205303632732466
EEIPANRKIKF	11	Unmodified	_EEIPANRKIKF_					0	0	0		nc|ENSG00000158528|Q9ULJ8|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	MULTI-MSMS	A375_MHC_IP_R1	1	449.325927734375	3	448.925988	1343.75613	-0.1173	-5.2659E-05	0.20542	9.222E-05	0.088124	3.9561E-05	448.92602012456064	31.895	0.40832	31.895	31.667	32.075	0					12	7	2	0	0	0	0.73679	1	10293	10293		2.4348	2.4348	1	3271300			9107	6310	6468	6521	8888	8888					0.09800708414286419
EEIPANRKIKF	11	Unmodified	_EEIPANRKIKF_					0	0	0		nc|ENSG00000158528|Q9ULJ8|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	MULTI-SECPEP	A375_MHC_IP_R2	2	448.62615966796875	3	448.925988	1343.75613	-0.35143	-0.00015777	0.23704	0.00010641	-0.11439	-5.1354E-05	448.92596012556487	31.099	0.35606	31.817	31.618	31.974	0.71857					11	6	2	0	0	0	0.99411	1	10943	10943		9.7643	9.7643	1	1671300			9108	6310	6468	6521	8889	8889					0.09800708414286419
EEIPANRKIKF	11	Unmodified	_EEIPANRKIKF_					0	0	0		nc|ENSG00000158528|Q9ULJ8|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	448.925988	1343.75613	-0.1173	-5.2659E-05	0.20542	9.222E-05	0.088124	3.9561E-05	448.92602012456064	31.895	0.40832	31.895	31.667	32.075	0	0.03894	-2.0196E-05	NaN	2.4348	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3271300			9109	6310	6468	6521							0.09800708414286419
EEIPDSPGI	9	Unmodified	_EEIPDSPGI_					0	0	0		nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12;nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;ENST00000497103.1_1_10:32101629-32132466:-|nuORF	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-SECPEP	A375_MHC_IP_R1	1	479.1316833496094	2	478.732197	955.449842	-0.86018	-0.0004118	0.74159	0.00035502	-0.11859	-5.6774E-05	478.7324443619357	68.133	0.80954	68.133	67.603	68.412	0					31	15	3	0	0	0	0.011229	1	24658	24658		109.63	65.222	1	3053100			9110	6941	6469	6522	8890	8890					-0.029665218185982667
EEIPDSPGI	9	Unmodified	_EEIPDSPGI_					0	0	0		nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12;nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;ENST00000497103.1_1_10:32101629-32132466:-|nuORF	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-SECPEP	A375_MHC_IP_R2	2	479.132080078125	2	478.732197	955.449842	-0.53995	-0.00025849	0.13902	6.6553E-05	-0.40093	-0.00019194	478.73216929428156	67.434	0.71062	68.171	67.801	68.511	0.73631					25	13	3	0	0	0	0.033126	1	25538	25538		97.075	61.03	1	3410100			9111	6941	6469	6522	8891	8891					-0.029665218185982667
EEIPDSSKI	9	Unmodified	_EEIPDSSKI_					0	0	0		ENSG00000181555|ENST00000409792|SETD2;nc|ENSG00000181555|Q9BYW2-2|SETD2;nc|ENSG00000181555|Q9BYW2-3|SETD2	ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	MULTI-MSMS	A375_MHC_IP_R1	1	509.6581726074219	2	509.258579	1016.50261	-0.7807	-0.00039758	0.45115	0.00022975	-0.32955	-0.00016783	509.25879641095156	38.149	0.66296	38.149	37.812	38.475	0					27	12	3	0	0	0	0.035419	1	12903	12903		70.332	5.097	1	7433800			9112	8351	6470	6523	8892	8892					-0.004985637557979317
EEIPDSSKI	9	Unmodified	_EEIPDSSKI_					0	0	0		ENSG00000181555|ENST00000409792|SETD2;nc|ENSG00000181555|Q9BYW2-2|SETD2;nc|ENSG00000181555|Q9BYW2-3|SETD2	ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	MULTI-MSMS	A375_MHC_IP_R2	2	509.65789794921875	2	509.258579	1016.50261	-1.1	-0.00056019	0.48446	0.00024672	-0.61555	-0.00031347	509.2587557993624	37.521	0.56185	38.292	37.968	38.53	0.7709					23	10	3	0	0	0	0.024574	1	13700	13700		79.596	14.361	1	7541900			9113	8351	6470	6523	8893	8893					-0.004985637557979317
EEIPFEQSF	9	Unmodified	_EEIPFEQSF_					0	0	0		nc|ENSG00000197128|Q68DY9-2|ZNF772;ENSG00000197128|ENST00000356584|ZNF772;nc|ENSG00000197128|Q68DY9|ZNF772	nc|ENSG00000197128|Q68DY9-2|ZNF772	nc|ENSG00000197128|Q68DY9-2|ZNF772	MULTI-MSMS	A375_MHC_IP_R1	1	563.6583251953125	2	563.258579	1124.50261	-0.17543	-9.8813E-05	0.096765	5.4504E-05	-0.078667	-4.431E-05	563.2585409305626	108.43	0.81135	108.43	108.05	108.86	0					22	15	2	0	0	0	0.0096822	1	39747	39747		110.55	72.579	1	3514600			9114	9120	6471	6524	8894	8894					-0.05466563755817333
EEIPFEQSF	9	Unmodified	_EEIPFEQSF_					0	0	0		nc|ENSG00000197128|Q68DY9-2|ZNF772;ENSG00000197128|ENST00000356584|ZNF772;nc|ENSG00000197128|Q68DY9|ZNF772	nc|ENSG00000197128|Q68DY9-2|ZNF772	nc|ENSG00000197128|Q68DY9-2|ZNF772	MULTI-MSMS	A375_MHC_IP_R2	2	563.6575927734375	2	563.258579	1124.50261	-0.56362	-0.00031746	-0.56673	-0.00031922	-1.1304	-0.00063668	563.2580914424864	107.75	0.91908	108.51	107.95	108.86	0.75436					26	17	2	0	0	0	0.0090499	1	40662	40662		100.09	62.117	1	3777800			9115	9120	6471	6524	8895	8895					-0.05466563755817333
EEIPKNAAY	9	Unmodified	_EEIPKNAAY_					0	0	0		ENST00000492549.5_1_7:123190514-123197849:-|nuORF;ENST00000567995.1_1_16:47632668-47632902:-|nuORF;nc|ENSG00000128609|Q16718-2|NDUFA5;ENSG00000128609|ENST00000355749|NDUFA5	ENST00000492549.5_1_7:123190514-123197849:-|nuORF	ENST00000492549.5_1_7:123190514-123197849:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1605224609375	2	517.761289	1033.50803	-1.3266	-0.00068688	-1.3161	-0.00068144	-2.6428	-0.0013683	517.7615020233764	29.647	1.063	30.346	29.981	31.044	0.69872					39	20	3	0	0	0	0.11436	1	10306	10306		68.081	26.241	1	4702200			9116	4155	6472	6525	8896	8896					-0.007388401733351202
EEIPKNYSI	9	Unmodified	_EEIPKNYSI_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.T2707Mfs*5|1|0.21|ENSG00000196367|chr7:98976664-98976688|CGCTGATGTTGGAGCACCAGGCTTT/-|frameshift_variant;TRRAP|p.I1891Sfs*37|1|0.32|ENSG00000196367|chr7:98953393-98953393|T/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	A375_MHC_IP_R2	2	546.6712646484375	2	546.782222	1091.54989	-0.79523	-0.00043482	-0.62341	-0.00034087	-1.4186	-0.00077569	546.7821970362634	48.472	0.5564	49.229	48.98	49.536	0.75737					43	10	5	0	0	0	0.35487	1	18132	18132		43.858	11.553	1	14669000			9117	9031	6473	6526	8897	8897					0.007777155151643456
EEIPKPKSV	9	Unmodified	_EEIPKPKSV_					0	0	0		nc|ENSG00000103342|P15170|GSPT1;nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1	nc|ENSG00000103342|P15170|GSPT1	nc|ENSG00000103342|P15170|GSPT1	MULTI-SECPEP	A375_MHC_IP_R2	2	513.9674682617188	2	513.795132	1025.57571	-1.0234	-0.00052581	0.45329	0.0002329	-0.57009	-0.00029291	513.7952607086995	24.152	0.35588	24.796	24.602	24.958	0.64368					9	6	2	0	0	0	0.73008	1	7866	7866		12.241	0	1	1858400			9118	2445	6474	6527	8898	8898					0.06394609757467151
EEIPKRETY	9	Unmodified	_EEIPKRETY_					0	0	0		ENSG00000116221|ENST00000360840|MRPL37;ENST00000490670.1_1_1:54670749-54673061:+|nuORF	ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	MULTI-SECPEP	A375_MHC_IP_R1	1	389.26800537109375	3	388.868027	1163.58225	0.413	0.0001606	-0.043978	-1.7101E-05	0.36902	0.0001435	388.8679233648877	21.271	0.66105	21.271	20.793	21.454	0					22	12	3	0	0	0	0.73008	1	5558	5558		16.566	6.8016	1	2113100			9119	3388	6475	6528	8899	8899					0.007005029181982536
EEIPKRETY	9	Unmodified	_EEIPKRETY_					0	0	0		ENSG00000116221|ENST00000360840|MRPL37;ENST00000490670.1_1_1:54670749-54673061:+|nuORF	ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	MULTI-MSMS	A375_MHC_IP_R2	2	389.2678527832031	3	388.868027	1163.58225	-0.45924	-0.00017858	0.072125	2.8047E-05	-0.38711	-0.00015054	388.86812095466655	19.746	0.65808	20.357	19.942	20.6	0.61029					28	12	3	0	0	0	0.44024	1	6079	6079		16.566	8.1216	1	1946000			9120	3388	6475	6528	8900	8900					0.007005029181982536
EEIPLIKSAY	10	Unmodified	_EEIPLIKSAY_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-SECPEP	A375_MHC_IP_R1	1	582.2211303710938	2	581.821347	1161.62814	-0.30927	-0.00017994	0.078994	4.596E-05	-0.23027	-0.00013398	581.8212457338974	76.744	0.61082	76.744	76.37	76.981	0					23	11	3	0	0	0	0.4546	1	27967	27967		51.415	26.016	1	2817000			9121	2743	6476	6529	8901	8901					0.053791481004282105
EEIPLIKSAY	10	Unmodified	_EEIPLIKSAY_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-SECPEP	A375_MHC_IP_R2	2	582.2212524414062	2	581.821347	1161.62814	-0.33979	-0.0001977	-0.073983	-4.3045E-05	-0.41377	-0.00024074	581.8213642454953	76.026	0.60811	76.767	76.385	76.994	0.74052					19	11	2	0	0	0	0.4546	1	28833	28833		51.415	22.921	1	3305300			9122	2743	6476	6529	8902	8902					0.053791481004282105
EEIPLKILA	9	Unmodified	_EEIPLKILA_					0	0	0		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000550858.1_1_12:42681476-42682067:+|nuORF;chr7:23346062-23347600|421|27.81|0.95|4.87|-|1|IGF2BP3,IGF2BP3|1;ENST00000435000.2_1_1:146523151-146523364:+|nuORF;ENST00000467592.5_1_7:23381795-23387427:-|nuORF;ENSG00000136231|ENST00000258729|IGF2BP3;ENST00000454907.1_1_6:167115266-167115902:-|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;ENSG00000136231|ENST00000258729|IGF2BP3	ENSG00000136231|ENST00000258729|IGF2BP3	MULTI-SECPEP	A375_MHC_IP_R1	1	512.6953735351562	2	513.3157	1024.61685	-0.44446	-0.00022815	0.46639	0.0002394	0.02193	1.1257E-05	513.817489966697	93.661	0.45756	93.661	93.433	93.89	0					13	8	2	0	0	0	0.53748	1	34443	34443		24.021	4.7636	1	1030600			9123	4766;1571	6477	6530	8903	8903					0.10552370796949617
EEIPPLLQPTP	11	Unmodified	_EEIPPLLQPTP_					0	0	0			REV__nc|ENSG00000221986|A2RUH7-2|MYBPHL	REV__nc|ENSG00000221986|A2RUH7-2|MYBPHL	MULTI-MSMS	A375_MHC_IP_R2	2	412.2955627441406	3	411.895695	1232.66525	-0.31755	-0.0001308	-0.022098	-9.1023E-06	-0.33965	-0.0001399	411.89563401730334	38.692	0.66288	39.467	39.149	39.812	0.77451					26	12	3	0	0	0	0.70919	1	14250	14250		14.838	0	1	5287100	+		9124	22698	6478	6531	8904	8904					0.05822819646186872
EEIPRQLQY	9	Unmodified	_EEIPRQLQY_					0	0	0		ENSG00000065308|ENST00000182527|TRAM2	ENSG00000065308|ENST00000182527|TRAM2	ENSG00000065308|ENST00000182527|TRAM2	MULTI-SECPEP	A375_MHC_IP_R1	1	588.706298828125	2	588.306395	1174.59824	-0.4782	-0.00028133	0.35176	0.00020694	-0.12644	-7.4386E-05	588.3066640830448	52.949	0.91305	52.949	52.592	53.505	0					31	17	3	0	0	0	0.076731	1	18835	18835		99.799	57.959	1	7553200			9125	1374	6479	6532	8905	8905					0.01792209155087221
EEIPRQLQY	9	Unmodified	_EEIPRQLQY_					0	0	0		ENSG00000065308|ENST00000182527|TRAM2	ENSG00000065308|ENST00000182527|TRAM2	ENSG00000065308|ENST00000182527|TRAM2	MULTI-SECPEP	A375_MHC_IP_R2	2	588.7061157226562	2	588.306395	1174.59824	-0.96916	-0.00057016	0.55164	0.00032453	-0.41752	-0.00024563	588.3065953288589	52.317	0.5563	53.069	52.78	53.336	0.75225					22	10	3	0	0	0	0.044425	1	19698	19698		107.19	107.19	1	9066200			9126	1374	6479	6532	8906	8906					0.01792209155087221
EEIPTHSF	8	Unmodified	_EEIPTHSF_					0	0	0		nc|ENSG00000166575|Q86UB9-2|TMEM135;ENSG00000166575|ENST00000305494|TMEM135	nc|ENSG00000166575|Q86UB9-2|TMEM135	nc|ENSG00000166575|Q86UB9-2|TMEM135	MULTI-SECPEP	A375_MHC_IP_R1	1	480.692138671875	2	480.227082	958.439611	-0.22498	-0.00010804	0.11796	5.6649E-05	-0.10701	-5.1391E-05	480.22704890787395	42.734	0.30379	42.734	42.537	42.841	0					7	5	2	0	0	0	0.84748	1	14824	14824		28.487	9.0478	1	1220100			9127	7091	6480	6533	8907	8907					-0.04127084753190502
EEIPTHSF	8	Unmodified	_EEIPTHSF_					0	0	0		nc|ENSG00000166575|Q86UB9-2|TMEM135;ENSG00000166575|ENST00000305494|TMEM135	nc|ENSG00000166575|Q86UB9-2|TMEM135	nc|ENSG00000166575|Q86UB9-2|TMEM135	MULTI-MSMS	A375_MHC_IP_R2	2	480.2001037597656	2	480.227082	958.439611	-0.50685	-0.0002434	-0.18645	-8.9536E-05	-0.6933	-0.00033294	480.22695569032305	42.01	0.30575	42.785	42.659	42.964	0.77451					7	5	2	0	0	0	0.69583	1	15654	15654		36.044	9.7029	1	1243400			9128	7091	6480	6533	8908	8908					-0.04127084753190502
EEIPVHEEF	9	Unmodified	_EEIPVHEEF_					0	0	0		nc|ENSG00000118961|Q9H6V9-2|LDAH;ENSG00000118961|ENST00000237822|LDAH;nc|ENSG00000118961|Q9H6V9-3|LDAH	nc|ENSG00000118961|Q9H6V9-2|LDAH	nc|ENSG00000118961|Q9H6V9-2|LDAH	MULTI-MSMS	A375_MHC_IP_R1	1	565.1640014648438	2	564.764029	1127.5135	-0.46923	-0.000265	-0.059066	-3.3358E-05	-0.5283	-0.00029836	564.7641560156095	58.404	0.96657	58.404	58.075	59.041	0					28	18	2	0	0	0	0.0022313	1	20946	20946		141.83	85.65	1	14523000			9129	3565	6481	6534	8909	8909					-0.045151613815278324
EEIPVSSHY	9	Unmodified	_EEIPVSSHY_					0	0	0		ENSG00000197299|ENST00000355112|BLM;ENST00000558825.5_1_15:91337395-91358506:+|nuORF;ENST00000560821.1_1_15:91352032-91358506:+|nuORF	ENSG00000197299|ENST00000355112|BLM	ENSG00000197299|ENST00000355112|BLM	MULTI-MSMS	A375_MHC_IP_R1	1	531.1505126953125	2	530.750921	1059.48729	-0.84032	-0.000446	1.1274	0.00059837	0.28709	0.00015237	530.7509741399639	39.719	0.45525	39.719	39.441	39.896	0					21	8	3	0	0	0	0.012712	1	13583	13583		92.822	41.192	1	11571000			9130	9142	6482	6535	8910	8910					-0.040074305529969934
EEIPVSSHY	9	Unmodified	_EEIPVSSHY_					0	0	0		ENSG00000197299|ENST00000355112|BLM;ENST00000558825.5_1_15:91337395-91358506:+|nuORF;ENST00000560821.1_1_15:91352032-91358506:+|nuORF	ENSG00000197299|ENST00000355112|BLM	ENSG00000197299|ENST00000355112|BLM	MULTI-MSMS	A375_MHC_IP_R2	2	531.1502685546875	2	530.750921	1059.48729	-0.83624	-0.00044384	1.0496	0.00055706	0.21332	0.00011322	530.7508010767086	39	0.56353	39.774	39.453	40.016	0.77451					24	10	3	0	0	0	0.01574	1	14379	14379		88.904	40.558	1	11154000			9131	9142	6482	6535	8911	8911					-0.040074305529969934
EEIQQLIKT	9	Unmodified	_EEIQQLIKT_					0	0	0			REV__ENSG00000092148|ENST00000399332|HECTD1	REV__ENSG00000092148|ENST00000399332|HECTD1	MULTI-SECPEP	A375_MHC_IP_R1	1	550.67041015625	2	551.311146	1100.60774	-0.62831	-0.0003464	0.76978	0.00042439	0.14147	7.7992E-05	551.3114182591185	46.557	0.50414	46.557	46.245	46.749	0					14	9	2	0	0	0	0.73926	1	16327	16327		8.7454	1.1365	1	2767700	+		9132	16964	6483	6536	8912	8912					0.061459774406330325
EEIQSFIY	8	Unmodified	_EEIQSFIY_					0	0	0		ENSG00000105255|ENST00000221856|FSD1	ENSG00000105255|ENST00000221856|FSD1	ENSG00000105255|ENST00000221856|FSD1	MULTI-MSMS	A375_MHC_IP_R1	1	515.1502685546875	2	514.75039	1027.48623	-0.4618	-0.00023771	0.24852	0.00012793	-0.21328	-0.00010979	514.7503866242866	101.27	0.6082	101.27	100.99	101.6	0					17	11	2	0	0	0	0.51581	1	37194	37194		48.346	14.159	1	2325000			9133	2581	6484	6537	8913	8913					-0.02641644921891384
EEIQSFIY	8	Unmodified	_EEIQSFIY_					0	0	0		ENSG00000105255|ENST00000221856|FSD1	ENSG00000105255|ENST00000221856|FSD1	ENSG00000105255|ENST00000221856|FSD1	MULTI-MSMS	A375_MHC_IP_R2	2	515.1507568359375	2	514.75039	1027.48623	-0.58149	-0.00029932	0.24394	0.00012557	-0.33755	-0.00017375	514.7505394907113	100.55	0.56298	101.31	100.98	101.54	0.76278					21	10	3	0	0	0	0.42086	1	38112	38112		52.268	6.2474	1	2424200			9134	2581	6484	6537	8914	8914					-0.02641644921891384
EEIQTVFNKY	10	Unmodified	_EEIQTVFNKY_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-SECPEP	A375_MHC_IP_R1	1	636.2193603515625	2	635.819335	1269.62412	-0.97772	-0.00062165	0.67888	0.00043164	-0.29885	-0.00019001	635.8196662090937	67.202	0.66455	67.202	66.836	67.5	0					37	12	4	0	0	0	0.02628	1	24310	24310		192.32	146.62	1	14729000			9135	2300	6485	6538	8915	8915					9.05860672446579E-05
EEIQTVFNKY	10	Unmodified	_EEIQTVFNKY_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-SECPEP	A375_MHC_IP_R2	2	636.2190551757812	2	635.819335	1269.62412	-0.90996	-0.00057857	0.3315	0.00021077	-0.57846	-0.0003678	635.8194840802128	66.512	0.6136	67.248	66.932	67.546	0.73631					33	11	4	0	0	0	0.02628	1	25172	25172		205.91	160.21	1	15421000			9136	2300	6485	6538	8916	8916					9.05860672446579E-05
EEIQYNEEV	9	Unmodified	_EEIQYNEEV_					0	0	0			REV__CTAGE6|p.R409Q|3|0.12|ENSG00000271321|chr7:143756433-143756433|C/T|missense_variant	REV__CTAGE6|p.R409Q|3|0.12|ENSG00000271321|chr7:143756433-143756433|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	576.7007446289062	2	576.756401	1151.49825	-0.33929	-0.00019569	-0.87552	-0.00050496	-1.2148	-0.00070065	576.756067192318	66.096	0.45564	66.096	65.871	66.326	0					11	8	2	0	0	0	0.32899	1	23979	23979		28.487	9.0478	1	1687400	+		9137	15932	6486	6539	8917	8917					-0.07144072969390436
EEIREAAQF	9	Unmodified	_EEIREAAQF_					0	0	0			REV__FRMPD4|p.G730R|1|0.09|ENSG00000169933|chrX:12716647-12716647|G/A|missense_variant	REV__FRMPD4|p.G730R|1|0.09|ENSG00000169933|chrX:12716647-12716647|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	547.1774291992188	2	546.769645	1091.52474	-0.51451	-0.00028132	-1.0012	-0.00054745	-1.5158	-0.00082877	546.7694872046962	59.619	0.81237	59.619	59.143	59.955	0					20	15	2	0	0	0	0.22528	2	21338	21338;21413		36.127	2.2295	1	2943000	+		9138	26651	6487	6540	8918;8919	8918					-0.01736339287390365
EEIREAAQF	9	Unmodified	_EEIREAAQF_					0	0	0			REV__FRMPD4|p.G730R|1|0.09|ENSG00000169933|chrX:12716647-12716647|G/A|missense_variant	REV__FRMPD4|p.G730R|1|0.09|ENSG00000169933|chrX:12716647-12716647|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	546.769645	1091.52474	-0.51451	-0.00028132	-1.0012	-0.00054745	-1.5158	-0.00082877	546.7694872046962	59.619	0.81237	59.619	59.143	59.955	0	0.062004	-0.0001846	NaN	36.127	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2943000	+		9139	26651	6487	6540							-0.01736339287390365
EEIREAFRVF	10	Unmodified	_EEIREAFRVF_					0	0	0		ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000178363|ENST00000315238|CALML3	ENST00000597868.5_1_19:47104691-47111872:+|nuORF	ENST00000597868.5_1_19:47104691-47111872:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	432.96307373046875	3	432.562938	1294.66699	-0.16145	-6.9838E-05	-0.092244	-3.9902E-05	-0.2537	-0.00010974	432.5628889630911	74.56	0.86331	74.56	74.197	75.06	0					44	16	4	0	0	0	0.11994	1	27116	27116		44.945	27.896	1	15376000			9140	5448	6488	6541	8920	8920					0.03143873454769164
EEIREAFRVF	10	Unmodified	_EEIREAFRVF_					0	0	0		ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000178363|ENST00000315238|CALML3	ENST00000597868.5_1_19:47104691-47111872:+|nuORF	ENST00000597868.5_1_19:47104691-47111872:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	432.9629211425781	3	432.562938	1294.66699	-0.21187	-9.1646E-05	-0.090088	-3.8969E-05	-0.30196	-0.00013061	432.56288385082865	73.696	0.91663	74.431	74.192	75.109	0.7354					46	17	5	0	0	0	0.098574	1	27931	27931		55.249	44.35	1	15736000			9141	5448	6488	6541	8921	8921					0.03143873454769164
EEIREREREK	10	Unmodified	_EEIREREREK_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MSMS	A375_MHC_IP_R1	1	687.2738037109375	2	687.360222	1372.70589	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.94	1	124.94	124.44	125.44	0								0	0	0	0.15332	1	47296	47296		10.074	1.3285	1				9142	3490	6489	6542	8922	8922					0.03444554018506096
EEIRFPRTL	9	Unmodified	_EEIRFPRTL_					0	0	0		nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000496089.6_1_19:40739781-40742062:-|nuORF;ENST00000557552.1_1_14:105238371-105239528:-|nuORF;ENSG00000142208|ENST00000649815|AKT1;nc|ENSG00000142208|P31749-2|AKT1	nc|ENSG00000105221|P31751-2|AKT2;ENSG00000142208|ENST00000649815|AKT1	nc|ENSG00000105221|P31751-2|AKT2	MULTI-MSMS	A375_MHC_IP_R1	1	387.9527282714844	3	387.552262	1159.63496	0.24818	9.6184E-05	0.20124	7.7991E-05	0.44942	0.00017417	387.55226702185223	59.731	0.61033	59.731	59.498	60.109	0					20	11	3	0	0	0	0.69884	1	21540	21540		7.4771	3.89	1	1480000			9143	2577;5296	6490	6543	8923	8923					0.06152505771660799
EEIRFPRTL	9	Unmodified	_EEIRFPRTL_					0	0	0		nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000496089.6_1_19:40739781-40742062:-|nuORF;ENST00000557552.1_1_14:105238371-105239528:-|nuORF;ENSG00000142208|ENST00000649815|AKT1;nc|ENSG00000142208|P31749-2|AKT1	nc|ENSG00000105221|P31751-2|AKT2;ENSG00000142208|ENST00000649815|AKT1	nc|ENSG00000105221|P31751-2|AKT2	MULTI-MSMS	A375_MHC_IP_R2	2	387.9521484375	3	387.552262	1159.63496	-0.51354	-0.00019902	0.077098	2.988E-05	-0.43644	-0.00016914	387.5522561818926	58.869	0.50914	59.616	59.387	59.896	0.74714					15	9	2	0	0	0	0.3489	1	22266	22266		20.871	5.1325	1	2170800			9144	2577;5296	6490	6543	8924	8924					0.06152505771660799
EEIRGGGLLKY	11	Unmodified	_EEIRGGGLLKY_					0	0	0		ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A;ENSG00000174016|ENST00000308293|TENT5D;ENSG00000158246|ENST00000289166|TENT5B;ENSG00000183508|ENST00000369448|TENT5C	ENSG00000112773|ENST00000320172|TENT5A;ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-SECPEP	A375_MHC_IP_R1	1	412.6314697265625	3	412.231189	1233.67174	0.12218	5.0368E-05	0.059375	2.4476E-05	0.18156	7.4844E-05	412.23121372980563	47.237	0.56481	47.237	46.952	47.517	0					24	10	3	0	0	0	0.17302	1	16597	16597		70.321	52.458	1	10436000			9145	8501;3110	6491	6544	8925	8925					0.06424757597574171
EEIRGGGLLKY	11	Unmodified	_EEIRGGGLLKY_					0	0	0		ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A;ENSG00000174016|ENST00000308293|TENT5D;ENSG00000158246|ENST00000289166|TENT5B;ENSG00000183508|ENST00000369448|TENT5C	ENSG00000112773|ENST00000320172|TENT5A;ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-MSMS	A375_MHC_IP_R2	2	412.63128662109375	3	412.231189	1233.67174	0.13805	5.691E-05	-0.10231	-4.2176E-05	0.035742	1.4734E-05	412.2311372592739	46.436	0.61085	47.201	46.906	47.517	0.76518					31	10	4	0	0	0	0.097697	1	17387	17387		70.321	50.695	1	8941300			9146	8501;3110	6491	6544	8926	8926					0.06424757597574171
EEIRIKGKY	9	Unmodified	_EEIRIKGKY_					0	0	0		ENSG00000169427|ENST00000520439|KCNK9	ENSG00000169427|ENST00000520439|KCNK9	ENSG00000169427|ENST00000520439|KCNK9	MULTI-SECPEP	A375_MHC_IP_R2	2	379.4476623535156	3	379.220513	1134.63971	-0.38241	-0.00014502	1.5118	0.00057332	1.1294	0.0004283	379.22067811855925	25.738	0.60976	26.398	26.144	26.754	0.65992					23	11	4	0	0	0	0.74169	1	8595	8595		11.495	7.6184	1	2845400			9147	7406	6492	6545	8927	8927					0.07777389914417654
EEIRILEHL	9	Unmodified	_EEIRILEHL_					0	0	0		nc|ENSG00000127334|Q92630-2|DYRK2;ENSG00000127334|ENST00000344096|DYRK2;ENSG00000143479|ENST00000367109|DYRK3;nc|ENSG00000143479|O43781-2|DYRK3	nc|ENSG00000127334|Q92630-2|DYRK2;ENSG00000143479|ENST00000367109|DYRK3	ENSG00000143479|ENST00000367109|DYRK3	MULTI-MSMS	A375_MHC_IP_R1	1	384.9523010253906	3	384.552151	1150.63462	0.35445	0.0001363	0.56999	0.00021919	0.92443	0.00035549	384.5521583962468	70.876	0.61365	70.876	70.494	71.108	0					19	11	3	0	0	0	0.32092	1	25772	25772		27.223	12.818	1	2500800			9148	4084;5398	6493	6546	8928	8928					0.06533086051786086
EEIRILEHL	9	Unmodified	_EEIRILEHL_					0	0	0		nc|ENSG00000127334|Q92630-2|DYRK2;ENSG00000127334|ENST00000344096|DYRK2;ENSG00000143479|ENST00000367109|DYRK3;nc|ENSG00000143479|O43781-2|DYRK3	nc|ENSG00000127334|Q92630-2|DYRK2;ENSG00000143479|ENST00000367109|DYRK3	ENSG00000143479|ENST00000367109|DYRK3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	384.552151	1150.63462	-0.04854	-1.8666E-05	0.22586	8.6856E-05	0.17732	6.819E-05	384.55223672946636	70.048	0.50888	70.782	70.488	70.997	0.73421	-0.046653	-0.00013672	NaN	27.223	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2606700			9149	4084;5398	6493	6546							0.06533086051786086
EEIRITKAY	9	Unmodified	_EEIRITKAY_					0	0	0		ENST00000308979.6_1_4:38800499-38805961:-|nuORF;ENST00000509754.5_1_4:38802433-38805961:-|nuORF;ENST00000505744.5_1_4:38792706-38805958:-|nuORF	ENST00000308979.6_1_4:38800499-38805961:-|nuORF	ENST00000308979.6_1_4:38800499-38805961:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	375.27667236328125	3	374.876634	1121.60807	0.30157	0.00011305	-0.25198	-9.4462E-05	0.049584	1.8588E-05	374.87650344765285	33.317	0.40775	33.317	33.14	33.547	0					17	7	3	0	0	0	0.41731	1	10867	10867		35.612	7.1177	1	9397200			9150	10606	6494	6547	8929	8929					0.05213397160468958
EEIRITKAY	9	Unmodified	_EEIRITKAY_					0	0	0		ENST00000308979.6_1_4:38800499-38805961:-|nuORF;ENST00000509754.5_1_4:38802433-38805961:-|nuORF;ENST00000505744.5_1_4:38792706-38805958:-|nuORF	ENST00000308979.6_1_4:38800499-38805961:-|nuORF	ENST00000308979.6_1_4:38800499-38805961:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	375.27655029296875	3	374.876634	1121.60807	0.26406	9.8991E-05	-0.13954	-5.2309E-05	0.12453	4.6682E-05	374.8765225127894	32.65	0.4068	33.387	33.162	33.569	0.73691					18	7	4	0	0	0	0.63749	1	11641	11641		26.021	6.6588	1	8164500			9151	10606	6494	6547	8930	8930					0.05213397160468958
EEIRKCGMENF	11	Unmodified	_EEIRKCGMENF_					0	0	0		ENSG00000236444|ENST00000635918|UBE2L5	ENSG00000236444|ENST00000635918|UBE2L5	ENSG00000236444|ENST00000635918|UBE2L5	MSMS	A375_MHC_IP_R2	2	678.2293090820312	2	678.307755	1354.60096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.41	1	107.17	106.67	107.67	0.75977								0	0	0	0.14647	1	40222	40222		22.736	8.8302	1				9152	9751	6495	6548	8931	8931					-0.062160267739045594
EEIRRISQTY	10	Unmodified	_EEIRRISQTY_					0	0	0		nc|ENSG00000196975|P09525-2|ANXA4;nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4	nc|ENSG00000196975|P09525-2|ANXA4	nc|ENSG00000196975|P09525-2|ANXA4	MULTI-MSMS	A375_MHC_IP_R1	1	432.62957763671875	3	432.229848	1293.66771	-0.34457	-0.00014894	0.040428	1.7474E-05	-0.30415	-0.00013146	432.22981990977553	28.119	0.40163	28.119	27.887	28.288	0					17	7	3	0	0	0	0.39599	1	8626	8626		23.801	12.283	1	8276500			9153	9097	6496	6549	8932	8932					0.032626681038664174
EEIRRISQTY	10	Unmodified	_EEIRRISQTY_					0	0	0		nc|ENSG00000196975|P09525-2|ANXA4;nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4	nc|ENSG00000196975|P09525-2|ANXA4	nc|ENSG00000196975|P09525-2|ANXA4	MULTI-MSMS	A375_MHC_IP_R2	2	432.6294860839844	3	432.229848	1293.66771	-0.16795	-7.2593E-05	-0.33909	-0.00014656	-0.50704	-0.00021916	432.2297327824728	27.45	0.3559	28.129	27.945	28.301	0.67857					18	6	4	0	0	0	0.50967	1	9389	9389		23.801	11.626	1	9368700			9154	9097	6496	6549	8933	8933					0.032626681038664174
EEIRRISQTY	10	Unmodified	_EEIRRISQTY_					0	0	0		nc|ENSG00000196975|P09525-2|ANXA4;nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4	nc|ENSG00000196975|P09525-2|ANXA4	nc|ENSG00000196975|P09525-2|ANXA4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	432.229848	1293.66771	-0.16795	-7.2593E-05	-0.33909	-0.00014656	-0.50704	-0.00021916	432.2297327824728	27.45	0.3559	28.129	27.945	28.301	0.67857	0.0049002	-0.00030685	NaN	23.801	18	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9368700			9155	9097	6496	6549							0.032626681038664174
EEIRYTHIL	9	Unmodified	_EEIRYTHIL_					0	0	0		ENSG00000110060|ENST00000227474|PUS3	ENSG00000110060|ENST00000227474|PUS3	ENSG00000110060|ENST00000227474|PUS3	MULTI-SECPEP	A375_MHC_IP_R1	1	392.2804870605469	3	391.880267	1172.61897	0.13747	5.3873E-05	0.18332	7.184E-05	0.32079	0.00012571	391.8803257036913	52.339	0.55785	52.339	52.034	52.592	0					18	10	2	0	0	0	0.49205	1	18580	18580		15.739	6.7624	1	9657100			9156	2914	6497	6550	8934	8934					0.0395679953473973
EEIRYTHIL	9	Unmodified	_EEIRYTHIL_					0	0	0		ENSG00000110060|ENST00000227474|PUS3	ENSG00000110060|ENST00000227474|PUS3	ENSG00000110060|ENST00000227474|PUS3	MULTI-SECPEP	A375_MHC_IP_R1	1	587.7167358398438	2	587.316763	1172.61897	-0.27368	-0.00016074	6.3777E-06	3.7458E-09	-0.27368	-0.00016074	587.3168138211305	52.266	0.40483	52.266	52.085	52.49	0					15	7	3	0	0	0	0.27742	1	18606	18606		43.772	25.626	1	3401800			9157	2914	6497	6550	8935	8935					0.0395679953473973
EEIRYTHIL	9	Unmodified	_EEIRYTHIL_					0	0	0		ENSG00000110060|ENST00000227474|PUS3	ENSG00000110060|ENST00000227474|PUS3	ENSG00000110060|ENST00000227474|PUS3	MULTI-SECPEP	A375_MHC_IP_R2	2	392.2800598144531	3	391.880267	1172.61897	-0.40183	-0.00015747	0.15104	5.919E-05	-0.25079	-9.828E-05	391.8803000888941	51.543	0.45601	52.296	52.017	52.473	0.75225					16	8	2	0	0	0	0.11711	1	19379	19379		55.235	31.445	1	17259000			9158	2914	6497	6550	8936	8936					0.0395679953473973
EEIRYTHIL	9	Unmodified	_EEIRYTHIL_					0	0	0		ENSG00000110060|ENST00000227474|PUS3	ENSG00000110060|ENST00000227474|PUS3	ENSG00000110060|ENST00000227474|PUS3	MULTI-SECPEP	A375_MHC_IP_R2	2	587.7164916992188	2	587.316763	1172.61897	-0.7854	-0.00046128	0.22401	0.00013157	-0.56139	-0.00032971	587.316814674362	51.543	0.40539	52.296	52.068	52.473	0.75225					13	7	3	0	0	0	0.47674	1	19403	19403		36.506	2.1045	1	3739100			9159	2914	6497	6550	8937	8937					0.0395679953473973
EEISDYSRKL	10	Unmodified	_EEISDYSRKL_					0	0	0		nc|ENSG00000113595|P36406-3|TRIM23;nc|ENSG00000113595|P36406-2|TRIM23;ENSG00000113595|ENST00000231524|TRIM23	nc|ENSG00000113595|P36406-3|TRIM23	nc|ENSG00000113595|P36406-3|TRIM23	MULTI-MSMS	A375_MHC_IP_R1	1	414.2787780761719	3	413.878704	1238.61428	0.43209	0.00017883	-0.34387	-0.00014232	0.088219	3.6512E-05	413.8785561421959	37.24	0.40814	37.24	37.045	37.454	0					16	7	3	0	0	0	0.70015	1	12563	12563		12.228	3.4758	1	3520500			9160	3166	6498	6551	8938	8938					0.004518706013186602
EEISDYSRKL	10	Unmodified	_EEISDYSRKL_					0	0	0		nc|ENSG00000113595|P36406-3|TRIM23;nc|ENSG00000113595|P36406-2|TRIM23;ENSG00000113595|ENST00000231524|TRIM23	nc|ENSG00000113595|P36406-3|TRIM23	nc|ENSG00000113595|P36406-3|TRIM23	MULTI-MSMS	A375_MHC_IP_R2	2	414.2785949707031	3	413.878704	1238.61428	-0.34221	-0.00014164	-0.14856	-6.1487E-05	-0.49078	-0.00020312	413.87869667006197	36.579	0.45772	37.35	37.106	37.564	0.7709					15	8	2	0	0	0	0.48194	1	13351	13351		29.281	10.941	1	3193800			9161	3166	6498	6551	8939	8939					0.004518706013186602
EEISEPTPDP	10	Unmodified	_EEISEPTPDP_					0	0	0		ENST00000281881.7_1_1:176905297-177133812:-|nuORF;nc|ENSG00000152092|O14525-3|ASTN1;ENSG00000152092|ENST00000361833|ASTN1;nc|ENSG00000152092|O14525|ASTN1	ENST00000281881.7_1_1:176905297-177133812:-|nuORF	ENST00000281881.7_1_1:176905297-177133812:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	558.1525268554688	2	557.250951	1112.48735	-0.52667	-0.00029349	0.77069	0.00042947	0.24403	0.00013598	557.251565750381	60.165	0.56006	60.165	59.854	60.414	0					18	10	3	0	0	0	0.53946	1	21677	21677		25.399	4.9457	1	1902700			9162	5944	6499	6552	8940	8940					-0.06439475343654522
EEISEPTPDP	10	Unmodified	_EEISEPTPDP_					0	0	0		ENST00000281881.7_1_1:176905297-177133812:-|nuORF;nc|ENSG00000152092|O14525-3|ASTN1;ENSG00000152092|ENST00000361833|ASTN1;nc|ENSG00000152092|O14525|ASTN1	ENST00000281881.7_1_1:176905297-177133812:-|nuORF	ENST00000281881.7_1_1:176905297-177133812:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	557.250951	1112.48735	-1.1726	-0.00065346	1.4191	0.00079081	0.24648	0.00013735	557.2516358116592	59.313	0.45536	60.06	59.793	60.249	0.74714	-0.052396	0.00011528	NaN	25.399	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2290800			9163	5944	6499	6552							-0.06439475343654522
EEISHLISF	9	Unmodified	_EEISHLISF_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	A375_MHC_IP_R1	1	537.7044067382812	2	537.776939	1073.53933	-0.78222	-0.00042066	-0.52299	-0.00028125	-1.3052	-0.00070191	537.776833204813	94.326	0.91451	94.326	93.991	94.905	0					35	17	4	0	0	0	0.077132	1	34609	34609		54.774	12.679	1	4457200			9164	3055	6500	6553	8941	8941					0.005497328607589225
EEISHLISF	9	Unmodified	_EEISHLISF_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	A375_MHC_IP_R2	2	538.1766357421875	2	537.776939	1073.53933	-0.73238	-0.00039386	-0.33743	-0.00018146	-1.0698	-0.00057532	537.7770546216901	93.592	0.91251	94.337	94.006	94.919	0.74474					33	17	3	0	0	0	0.07754	1	35526	35526		74.423	23.568	1	4539500			9165	3055	6500	6553	8942	8942					0.005497328607589225
EEISNMIHSY	10	Unmodified	_EEISNMIHSY_					0	0	0		nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A	nc|ENSG00000139116|Q7Z4S6-6|KIF21A	nc|ENSG00000139116|Q7Z4S6-6|KIF21A	MULTI-SECPEP	A375_MHC_IP_R2	2	612.1737670898438	2	611.774071	1221.53359	-0.47158	-0.0002885	0.1376	8.418E-05	-0.33398	-0.00020432	611.7740664002192	63.09	0.45652	63.833	63.634	64.091	0.74263					14	8	2	0	0	0	0.42334	1	23975	23975		51.63	17.228	1	1834100			9166	5048	6501	6554	8943	8943					-0.06831733713192989
EEISNMIHSY	10	Unmodified	_EEISNMIHSY_					0	0	0		nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A	nc|ENSG00000139116|Q7Z4S6-6|KIF21A	nc|ENSG00000139116|Q7Z4S6-6|KIF21A	MULTI-MATCH	A375_MHC_IP_R1	1		2	611.774071	1221.53359	-0.31501	-0.00019271	-0.02013	-1.2315E-05	-0.33514	-0.00020503	611.7739086774541	63.683	0.46113	63.683	63.477	63.939	0	-0.074684	-0.00015869	NaN	51.63	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1769300			9167	5048	6501	6554							-0.06831733713192989
EEISPNIRY	9	Unmodified	_EEISPNIRY_					0	0	0		nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-4|SRP68;SRP68|p.L315*|1|0.27|ENSG00000167881|chr17:76057437-76057437|A/-|frameshift_variant	nc|ENSG00000167881|Q9UHB9-2|SRP68	nc|ENSG00000167881|Q9UHB9-2|SRP68	MULTI-SECPEP	A375_MHC_IP_R1	1	561.1853637695312	2	560.785296	1119.55604	-0.50296	-0.00028205	0.10397	5.8305E-05	-0.39899	-0.00022375	560.7853906770594	50.529	0.60992	50.529	50.254	50.864	0					30	11	4	0	0	0	0.058501	1	17888	17888		107.19	107.19	1	12573000			9168	7233	6502	6555	8944	8944					0.0010423374669699115
EEISPNIRY	9	Unmodified	_EEISPNIRY_					0	0	0		nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-4|SRP68;SRP68|p.L315*|1|0.27|ENSG00000167881|chr17:76057437-76057437|A/-|frameshift_variant	nc|ENSG00000167881|Q9UHB9-2|SRP68	nc|ENSG00000167881|Q9UHB9-2|SRP68	MULTI-MATCH	A375_MHC_IP_R2	2		2	560.785296	1119.55604	-0.87402	-0.00049014	0.45965	0.00025776	-0.41437	-0.00023237	560.7855423686592	49.869	0.71172	50.623	50.193	50.904	0.75406	0.046801	0.00019935	NaN	118.89	36	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11903000			9169	7233	6502	6555							0.0010423374669699115
EEISPQPPIY	10	Unmodified	_EEISPQPPIY_					0	0	0			REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549	REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549	MULTI-SECPEP	A375_MHC_IP_R2	2	391.26251220703125	3	391.532645	1171.5761	-0.61493	-0.00024077	-2.7899	-0.0010923	-3.4048	-0.0013331	391.5317460405204	25.204	0.45911	25.848	25.668	26.128	0.64368					12	8	2	0	0	0	0.91909	1	8379	8379		8.4443	3.9154	1	2308800	+		9170	18219	6503	6556	8945	8945					-0.0028201531331433216
EEISTLVQKL	10	Unmodified	_EEISTLVQKL_					0	0	0		nc|ENSG00000055950|Q8N983|MRPL43;ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	nc|ENSG00000055950|Q8N983|MRPL43	nc|ENSG00000055950|Q8N983|MRPL43	MULTI-SECPEP	A375_MHC_IP_R2	2	579.6931762695312	2	580.332079	1158.6496	-0.20852	-0.00012101	-0.30854	-0.00017906	-0.51706	-0.00030007	580.3315586736751	84.141	0.30658	84.881	84.766	85.073	0.73962					8	5	2	0	0	0	0.83447	1	32040	32040		23.79	17.067	1	2399000			9171	14468	6504	6557	8946	8946					0.07662533129155236
EEISTVLQY	9	Unmodified	_EEISTVLQY_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-SECPEP	A375_MHC_IP_R1	1	541.6738891601562	2	541.274229	1080.53391	-0.81162	-0.00043931	-0.54532	-0.00029517	-1.3569	-0.00073447	541.2738812189771	91.022	1.0643	91.022	90.641	91.706	0					25	20	2	0	0	0	0.050875	1	33455	33455		74.423	32.328	1	3045100			9172	6149	6505	6558	8947	8947					-0.0031399072172462184
EEISTVLQY	9	Unmodified	_EEISTVLQY_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-SECPEP	A375_MHC_IP_R2	2	541.6736450195312	2	541.274229	1080.53391	-0.73338	-0.00039696	-1.1998	-0.00064943	-1.9332	-0.0010464	541.2743049664033	90.415	1.0653	91.149	90.854	91.919	0.7345					40	20	3	0	0	0	0.10969	1	34400	34400		57.471	28.985	1	3591700			9173	6149	6505	6558	8948	8948					-0.0031399072172462184
EEITEVVSW	9	Unmodified	_EEITEVVSW_					0	0	0		tr|U7SFS1|U7SFS1_FUSNUCytokininriboside5'-monophosphatephosphoribohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02213PE=3SV=1	tr|U7SFS1|U7SFS1_FUSNUCytokininriboside5'-monophosphatephosphoribohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02213PE=3SV=1	tr|U7SFS1|U7SFS1_FUSNUCytokininriboside5'-monophosphatephosphoribohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02213PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6664428710938	2	546.266404	1090.51826	-0.58089	-0.00031732	1.2602	0.00068839	0.67928	0.00037107	546.2668549988279	76.158	0.85837	76.158	75.714	76.572	0					27	16	2	0	0	0	0.3607	1	27722	27722		20.454	0	1	3531900			9174	29392	6506	6559	8949	8949					-0.023382772387549267
EEITNGNEDF	10	Unmodified	_EEITNGNEDF_					0	0	0			REV__tr|U7SHE5|U7SHE5_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02282PE=4SV=1	REV__tr|U7SHE5|U7SHE5_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02282PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	584.1875	2	584.243657	1166.47276	-0.33509	-0.00019577	-0.075549	-4.4139E-05	-0.41064	-0.00023991	584.24363651565	46.527	0.80979	46.527	46.245	47.055	0					33	15	3	0	0	0	0.87163	1	16280	16280		13.906	0	1	6848400	+		9175	28210	6507	6560	8950	8950					-0.10381547491806487
EEITNGNEDF	10	Unmodified	_EEITNGNEDF_					0	0	0			REV__tr|U7SHE5|U7SHE5_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02282PE=4SV=1	REV__tr|U7SHE5|U7SHE5_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02282PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	584.6433715820312	2	584.243657	1166.47276	-0.4224	-0.00024679	0.019865	1.1606E-05	-0.40254	-0.00023518	584.2435495555083	45.835	1.0605	46.6	46.201	47.262	0.76519					37	20	3	0	0	0	0.62155	1	17089	17089		19.257	2.3147	1	6217700	+		9176	28210	6507	6560	8951	8951					-0.10381547491806487
EEITRFYS	8	Unmodified	_EEITRFYS_					0	0	0			REV__KRT35|p.Q155K|1|0.77|ENSG00000197079|chr17:41480635-41480635|G/T|missense_variant	REV__KRT35|p.Q155K|1|0.77|ENSG00000197079|chr17:41480635-41480635|G/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	522.62939453125	2	522.753464	1043.49238	-0.8072	-0.00042197	-1.0343	-0.00054069	-1.8415	-0.00096266	522.7533212315922	35.372	0.60567	36.135	35.727	36.333	0.76338					15	11	2	0	0	0	0.90224	1	12853	12853		26.341	3.1929	1	1666800	+	+	9177	15851	6508	6561	8952	8952					-0.027631266903881624
EEITTGSAW	9	Unmodified	_EEITTGSAW_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	A375_MHC_IP_R1	1	497.6296081542969	2	497.229822	992.445091	-0.56009	-0.00027849	0.24647	0.00012255	-0.31362	-0.00015594	497.2298695425573	66.242	0.65807	66.242	65.871	66.529	0					26	12	3	0	0	0	0.03497	1	23972	23972		70.716	26.309	1	4689400			9178	6583	6509	6562	8953	8953					-0.051434059613711725
EEITTGSAW	9	Unmodified	_EEITTGSAW_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	A375_MHC_IP_R2	2	497.62969970703125	2	497.229822	992.445091	-0.65482	-0.0003256	0.26029	0.00012942	-0.39454	-0.00019618	497.22987654534415	65.628	0.76231	66.366	65.917	66.68	0.73811					35	14	3	0	0	0	0.03063	1	24832	24832		74.423	45.936	1	3488300			9179	6583	6509	6562	8954	8954					-0.051434059613711725
EEITTGSAWF	10	Unmodified	_EEITTGSAWF_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-SECPEP	A375_MHC_IP_R2	2	571.16455078125	2	570.764029	1139.5135	-0.21141	-0.00012066	0.58326	0.00033291	0.37186	0.00021224	570.764402185524	109.23	0.71122	109.97	109.62	110.33	0.74684					26	13	3	0	0	0	0.32951	1	41220	41220		54.774	38.926	1	2714900			9180	6583	6510	6563	8955	8955					-0.05067161381521146
EEIVFPRQF	9	Unmodified	_EEIVFPRQF_					0	0	0		nc|ENSG00000170558|P19022-2|CDH2;ENSG00000170558|ENST00000269141|CDH2	nc|ENSG00000170558|P19022-2|CDH2	nc|ENSG00000170558|P19022-2|CDH2	MULTI-SECPEP	A375_MHC_IP_R1	1	583.1731567382812	2	582.806031	1163.59751	-0.4395	-0.00025614	0.0066328	3.8657E-06	-0.43287	-0.00025228	582.8060596331064	86.101	0.70847	86.101	85.819	86.527	0					26	13	3	0	0	0	0.13244	1	31620	31620		65.235	47.089	1	6004300			9181	7521	6511	6564	8956	8956					0.02225414506051493
EEIVFPRQF	9	Unmodified	_EEIVFPRQF_					0	0	0		nc|ENSG00000170558|P19022-2|CDH2;ENSG00000170558|ENST00000269141|CDH2	nc|ENSG00000170558|P19022-2|CDH2	nc|ENSG00000170558|P19022-2|CDH2	MULTI-SECPEP	A375_MHC_IP_R2	2	583.2056884765625	2	582.806031	1163.59751	-0.2402	-0.00013999	-0.21415	-0.00012481	-0.45436	-0.0002648	582.805769663972	85.408	0.66046	86.144	85.831	86.492	0.73602					25	12	3	0	0	0	0.14606	1	32439	32439		81.613	59.866	1	5257100			9182	7521	6511	6564	8957	8957					0.02225414506051493
EEIVFRYY	8	Unmodified	_EEIVFRYY_					0	0	0		ENSG00000160593|ENST00000356289|JAML;nc|ENSG00000160593|Q86YT9-3|JAML;ENST00000534294.5_1_11:118074137-118095689:-|nuORF;nc|ENSG00000160593|Q86YT9-4|JAML;nc|ENSG00000160593|Q86YT9-2|JAML	ENSG00000160593|ENST00000356289|JAML	ENSG00000160593|ENST00000356289|JAML	MSMS	A375_MHC_IP_R2	2	559.6978759765625	2	559.779482	1117.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.014	1	34.766	34.266	35.266	0.75225								0	0	0	0.16876	1	12232	12232		19.439	4.1905	1				9183	6426	6512	6565	8958	8958					-0.009659632766215509
EEIVFRYYHKL	11	Unmodified	_EEIVFRYYHKL_					0	0	0		ENSG00000160593|ENST00000356289|JAML;nc|ENSG00000160593|Q86YT9-3|JAML;ENST00000534294.5_1_11:118074137-118095689:-|nuORF;nc|ENSG00000160593|Q86YT9-4|JAML;nc|ENSG00000160593|Q86YT9-2|JAML	ENSG00000160593|ENST00000356289|JAML	ENSG00000160593|ENST00000356289|JAML	MULTI-SECPEP	A375_MHC_IP_R2	2	500.0007629394531	3	499.601393	1495.78235	-0.86613	-0.00043272	-0.59316	-0.00029634	-1.4593	-0.00072906	499.60117451876636	19.921	0.96435	20.531	20.044	21.008	0.61029					54	18	4	0	0	0	1.0004	1	6070	6070		1.2148	1.2148	1	8798000			9184	6426	6513	6566	8959	8959					0.05428977585802386
EEIVLKVAI	9	Unmodified	_EEIVLKVAI_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2;ENST00000597774.5_1_19:50270412-50303272:+|nuORF;nc|ENSG00000196961|O95782|AP2A1;ENSG00000196961|ENST00000354293|AP2A1	nc|ENSG00000183020|O94973-3|AP2A2;nc|ENSG00000196961|O95782|AP2A1	nc|ENSG00000196961|O95782|AP2A1	MULTI-SECPEP	A375_MHC_IP_R1	1	507.13604736328125	2	507.3157	1012.61685	-0.35352	-0.00017935	0.11332	5.7489E-05	-0.2402	-0.00012186	507.31562175956805	98.417	0.2563	98.417	98.25	98.507	0					7	4	2	0	0	0	0.65246	1	36186	36186		21.747	10.923	1	392280			9185	8455;9095	6514	6567	8960	8960					0.11104370796931562
EEIWDQPPSS	10	Unmodified	_EEIWDQPPSS_					0	0	0			REV__nc|ENSG00000100503|Q8N4C6-6|NIN	REV__nc|ENSG00000100503|Q8N4C6-6|NIN	MULTI-MSMS	A375_MHC_IP_R1	1	594.6641235351562	2	594.264393	1186.51423	-0.28762	-0.00017092	0.18777	0.00011159	-0.099841	-5.9332E-05	594.2644856799562	62.953	0.56356	62.953	62.66	63.223	0					22	10	3	0	0	0	0.70793	1	22752	22752		8.7454	0.58988	1	2132300	+		9186	17098	6515	6568	8961	8961					-0.07156366732488095
EEIWEFLN	8	Unmodified	_EEIWEFLN_					0	0	0		ENSG00000099399|ENST00000378988|MAGEB2;MAGEB4|p.G228R|1|0.62|ENSG00000120289|chrX:30242817-30242817|G/A|missense_variant;ENSG00000120289|ENST00000378982|MAGEB4	ENSG00000099399|ENST00000378988|MAGEB2	ENSG00000099399|ENST00000378988|MAGEB2	MSMS	A375_MHC_IP_R2	2	540.1737060546875	2	540.25584	1078.49713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.16	1	79.905	79.405	80.405	0.74474								0	0	0	0.16876	1	30040	30040		23.148	2.6948	1				9187	2078	6516	6569	8962	8962					-0.03898242547620612
EEIWLFDPD	9	Unmodified	_EEIWLFDPD_					0	0	0			REV__nc|ENSG00000176834|Q8N0Z9-2|VSIG10	REV__nc|ENSG00000176834|Q8N0Z9-2|VSIG10	MSMS	A375_MHC_IP_R2	2	582.2212524414062	2	582.266404	1162.51826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.953	1	76.693	76.193	77.193	0.74052								0	0	0	0.1499	1	28833	28833		21.747	0	1		+		9188	21420	6517	6570	8963	8963					-0.05650277238783019
EEIWRLAQIQD	11	Unmodified	_EEIWRLAQIQD_					0	0	0			REV__nc|ENSG00000165246|Q8NFZ3-2|NLGN4Y	REV__nc|ENSG00000165246|Q8NFZ3-2|NLGN4Y	MULTI-SECPEP	A375_MHC_IP_R1	1	468.3115539550781	3	467.577136	1399.70958	-0.29442	-0.00013766	0.14371	6.7194E-05	-0.15071	-7.047E-05	467.577092972226	60.447	0.66161	60.447	60.109	60.77	0					39	12	4	0	0	0	0.9907	1	21726	21726		12.856	1.7907	1	16123000	+		9189	19559	6518	6571	8964	8964					0.025712237923471548
EEIWRLAQIQD	11	Unmodified	_EEIWRLAQIQD_					0	0	0			REV__nc|ENSG00000165246|Q8NFZ3-2|NLGN4Y	REV__nc|ENSG00000165246|Q8NFZ3-2|NLGN4Y	MULTI-SECPEP	A375_MHC_IP_R2	2	468.311279296875	3	467.577136	1399.70958	-1.0116	-0.000473	0.39395	0.0001842	-0.61764	-0.00028879	467.57717816500497	59.627	1.1634	60.375	59.691	60.855	0.74714					48	22	3	0	0	0	0.9907	1	22519	22519		12.856	3.6122	1	17669000	+		9190	19559	6518	6571	8965	8965					0.025712237923471548
EEIYELHAM	9	Unmodified	_EEIYELHAM_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.N3444Tfs*24|1|0.36|ENSG00000164199|chr5:90728837-90728837|A/-|frameshift_variant;nc|ENSG00000164199|Q8WXG9-3|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	A375_MHC_IP_R2	2	567.1902465820312	2	567.760432	1133.50631	-0.6974	-0.00039596	0.014986	8.5083E-06	-0.68241	-0.00038745	567.7603398174657	57.51	0.45829	58.259	58.019	58.477	0.74894					12	8	2	0	0	0	0.65246	1	21758	21758		15.847	0	1	1220700			9191	6801	6519	6572	8966	8966					-0.05510217253595329
EEIYKDRQKF	10	Unmodified	_EEIYKDRQKF_					0	0	0		ENSG00000137312|ENST00000376389|FLOT1	ENSG00000137312|ENST00000376389|FLOT1	ENSG00000137312|ENST00000376389|FLOT1	MULTI-MSMS	A375_MHC_IP_R1	1	452.9698181152344	3	452.569981	1354.68811	-0.48281	-0.0002185	-0.72401	-0.00032766	-1.2068	-0.00054617	452.56993756835317	23.61	0.61025	23.61	23.381	23.991	0					18	11	2	0	0	0	0.021084	1	6526	6526		84.738	60.774	1	17305000			9192	4876	6520	6573	8967	8967					0.02495838763638858
EEIYKDRQKF	10	Unmodified	_EEIYKDRQKF_					0	0	0		ENSG00000137312|ENST00000376389|FLOT1	ENSG00000137312|ENST00000376389|FLOT1	ENSG00000137312|ENST00000376389|FLOT1	MULTI-MSMS	A375_MHC_IP_R2	2	452.969482421875	3	452.569981	1354.68811	-0.59097	-0.00026745	0.17166	7.7686E-05	-0.41931	-0.00018977	452.5699959924715	21.608	0.40902	22.227	22.03	22.439	0.61932					21	7	4	0	0	0	0.061707	1	6803	6803		72.59	43.308	1	7667300			9193	4876	6520	6573	8968	8968					0.02495838763638858
EEIYKDRQKF	10	Unmodified	_EEIYKDRQKF_					0	0	0		ENSG00000137312|ENST00000376389|FLOT1	ENSG00000137312|ENST00000376389|FLOT1	ENSG00000137312|ENST00000376389|FLOT1	MULTI-SECPEP	A375_MHC_IP_R2	2	453.1296081542969	3	452.569981	1354.68811	-0.55601	-0.00025163	0.17668	7.9958E-05	-0.37934	-0.00017168	452.9045282904977	23.4	0.20083	24.03	23.928	24.129	0.63014					5	3	2	0	0	0	0.90611	1	7551	7551		15.538	6.7867	1	3370100			9194	4876	6520	6573	8969	8969					0.02495838763638858
EEIYPPEVD	9	Unmodified	_EEIYPPEVD_					0	0	0		ENSG00000133101|ENST00000255465|CCNA1;nc|ENSG00000133101|P78396-2|CCNA1;nc|ENSG00000133101|P78396|CCNA1	ENSG00000133101|ENST00000255465|CCNA1	ENSG00000133101|ENST00000255465|CCNA1	MULTI-MSMS	A375_MHC_IP_R2	2	546.1524658203125	2	545.750587	1089.48662	-0.91253	-0.00049802	2.5185	0.0013745	1.606	0.00087645	545.7516587185547	44.997	0.66174	45.766	45.39	46.052	0.7691					19	12	2	0	0	0	0.4867	1	16785	16785		20.454	3.5113	1	3317200			9195	4484	6521	6574	8970	8970					-0.05454269992696936
EEIYPPYNI	9	Unmodified	_EEIYPPYNI_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MSMS	A375_MHC_IP_R2	2	569.1752319335938	2	569.276772	1136.53899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.372	1	68.109	67.609	68.609	0.73631								0	0	0	0.083165	1	25524	25524		46.021	8.047	1				9196	1177	6522	6575	8971	8971					-0.023816868590984086
EEIYSLYY	8	Unmodified	_EEIYSLYY_					0	0	0			REV__nc|ENSG00000126883|P35658-2|NUP214	REV__nc|ENSG00000126883|P35658-2|NUP214	MULTI-SECPEP	A375_MHC_IP_R2	2	540.179931640625	2	540.250223	1078.48589	-0.96742	-0.00052265	-0.80242	-0.00043351	-1.7698	-0.00095616	540.7520473349836	44.893	0.66174	45.662	45.39	46.052	0.7691					14	12	2	0	0	0	0.93416	1	16907	16907		20.871	10.047	1	1554200	+		9197	18405	6523	6576	8972	8972					-0.05021064641755402
EEKARYPNIP	10	Unmodified	_EEKARYPNIP_					0	0	0			REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	MULTI-MSMS	A375_MHC_IP_R1	1	406.5913391113281	3	406.215539	1215.62479	-0.40215	-0.00016336	-0.075493	-3.0667E-05	-0.47764	-0.00019403	406.5497549101065	19.688	0.45765	19.688	19.42	19.877	0					11	8	2	0	0	0	0.66857	1	4905	4905		15.739	7.5831	1	1361300	+		9198	18387	6524	6577	8973	8973					0.025598980464110355
EEKDKKVTY	9	Unmodified	_EEKDKKVTY_					0	0	0			REV__ENST00000495396.5_1_1:204956439-204985664:+|nuORF	REV__ENST00000495396.5_1_1:204956439-204985664:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	570.7527465820312	2	570.300778	1138.587	-0.4216	-0.00024044	-0.90405	-0.00051558	-1.3256	-0.00075602	570.801845479371	44.799	0.81355	45.568	45.138	45.951	0.7691					30	15	3	0	0	0	0.64808	1	16623	16623		11.64	1.5664	1	2385400	+		9199	20374	6525	6578	8974	8974					0.02325387060977846
EEKDPEEFLN	10	Unmodified	_EEKDPEEFLN_					0	0	0		nc|ENSG00000083799|Q9NQC7-2|CYLD;ENSG00000083799|ENST00000427738|CYLD	nc|ENSG00000083799|Q9NQC7-2|CYLD	nc|ENSG00000083799|Q9NQC7-2|CYLD	MULTI-SECPEP	A375_MHC_IP_R1	1	624.7803344726562	2	625.282783	1248.55101	-0.41297	-0.00025823	-4.2722	-0.0026713	-4.6852	-0.0029296	625.7805993773951	88.893	0.30521	88.893	88.714	89.019	0					6	5	2	0	0	0	0.92957	1	32643	32643		6.2058	3.4706	1	1115100			9200	1786	6526	6579	8975	8975					-0.06332114906558672
EEKDQGSTF	9	Unmodified	_EEKDQGSTF_					0	0	0			REV__ENST00000573005.1_1_16:48398925-48399497:-|nuORF	REV__ENST00000573005.1_1_16:48398925-48399497:-|nuORF	MSMS	A375_MHC_IP_R2	2	520.632080078125	2	520.730186	1039.44582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.511	1	43.283	42.783	43.783	0.7724								0	0	0	0.15486	1	15815	15815		10.824	0.75	1		+		9201	26290	6527	6580	8976	8976					-0.07232611312315385
EEKELLEQE	9	Unmodified	_EEKELLEQE_					0	0	0		ENSG00000163820|ENST00000296137|FYCO1;nc|ENSG00000163820|Q9BQS8-4|FYCO1	ENSG00000163820|ENST00000296137|FYCO1	ENSG00000163820|ENST00000296137|FYCO1	MULTI-MSMS	A375_MHC_IP_R2	2	574.7366943359375	2	573.779876	1145.5452	-0.62393	-0.000358	0.70819	0.00040634	0.084258	4.8346E-05	573.7798702785487	56.628	0.61132	57.378	57.051	57.662	0.75015					34	11	4	0	0	0	0.53367	1	21386	21386		18.146	3.3081	1	4629500			9202	6729	6528	6581	8977	8977					-0.021752134182406735
EEKERFQR	8	Unmodified	_EEKERFQR_					0	0	0		ENSG00000144395|ENST00000389175|CCDC150	ENSG00000144395|ENST00000389175|CCDC150	ENSG00000144395|ENST00000389175|CCDC150	MULTI-SECPEP	A375_MHC_IP_R1	1	561.1870727539062	2	561.288537	1120.56252	-0.42469	-0.00023837	2.3453	0.0013164	1.9206	0.001078	561.2887676558735	63.418	0.20307	63.418	63.326	63.529	0					5	3	2	0	0	0	0.96266	1	22954	22954		3.9444	0	1	900430			9203	5483	6529	6582	8978	8978					0.007061716981070276
EEKFIKKGEF	10	Unmodified	_EEKFIKKGEF_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-SECPEP	A375_MHC_IP_R1	1	419.2955322265625	3	418.895806	1253.66559	0.042079	1.7627E-05	0.26411	0.00011063	0.30619	0.00012826	418.8957466942147	27.306	0.50483	27.306	26.978	27.482	0					14	9	2	0	0	0	0.76274	1	8301	8301		25.997	6.3714	1	4462200			9204	3109	6530	6583	8979	8979					0.048902393660455346
EEKFIKKGEF	10	Unmodified	_EEKFIKKGEF_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-SECPEP	A375_MHC_IP_R2	2	419.2957763671875	3	418.895806	1253.66559	-0.43385	-0.00018174	0.0088532	3.7086E-06	-0.42499	-0.00017803	418.89579866380217	26.577	0.35588	27.237	27.058	27.414	0.65992					10	6	2	0	0	0	0.79895	1	9030	9030		28.234	13.276	1	4962900			9205	3109	6530	6583	8980	8980					0.048902393660455346
EEKFKIIERAE	11	Unmodified	_EEKFKIIERAE_					0	0	0		ENST00000430436.5_2_20:20486175-20493168:-|nuORF	ENST00000430436.5_2_20:20486175-20493168:-|nuORF	ENST00000430436.5_2_20:20486175-20493168:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	464.98876953125	3	464.589153	1390.74563	0.041504	1.9282E-05	-0.67657	-0.00031433	-0.63507	-0.00029504	464.58883450308565	21.623	0.40576	21.623	21.352	21.757	0					13	7	3	0	0	0	0.99945	1	5733	5733		2.2527	0	1	1703000			9206	11856	6531	6584	8981	8981					0.06588680969230154
EEKGVTLLYY	10	Unmodified	_EEKGVTLLYY_					0	0	0		ENST00000541937.2_1_12:131451015-131457650:+|nuORF;ADGRD1|p.A718Pfs*17|1|0.2|ENSG00000111452|chr12:131120889-131120889|A/-|frameshift_variant;ENSG00000111452|ENST00000261654|ADGRD1;nc|ENSG00000111452|Q6QNK2-4|ADGRD1	ENST00000541937.2_1_12:131451015-131457650:+|nuORF	ENST00000541937.2_1_12:131451015-131457650:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	608.218505859375	2	607.818804	1213.62306	-0.32593	-0.00019811	-0.22869	-0.000139	-0.55462	-0.00033711	607.8187654971771	74.506	0.96452	74.506	73.943	74.908	0					26	18	2	0	0	0	0.46496	1	27130	27130		49.554	1.9599	1	3327100			9207	69	6532	6585	8982	8982					0.024788442378394393
EEKHVHTI	8	Unmodified	_EEKHVHTI_					0	0	0			REV__nc|ENSG00000180398|Q8NI22-2|MCFD2	REV__nc|ENSG00000180398|Q8NI22-2|MCFD2	MULTI-MSMS	A375_MHC_IP_R1	1	497.16082763671875	2	496.761623	991.508694	0.020541	1.0204E-05	-1.6196	-0.00080456	-1.5991	-0.00079435	496.7606496170619	48.519	0.76002	48.519	48.173	48.933	0					24	14	2	0	0	0	0.66714	2	17160	17160;17182		42.095	6.0504	1	6062500	+		9208	21611	6533	6586	8983;8984	8983					0.012599992663922421
EEKIEKLSELF	11	Unmodified	_EEKIEKLSELF_					0	0	0			REV__ENSG00000162542|ENST00000294543|TMCO4	REV__ENSG00000162542|ENST00000294543|TMCO4	MULTI-MSMS	A375_MHC_IP_R1	1	455.98065185546875	3	455.581776	1363.7235	-0.51786	-0.00023593	-2.0165	-0.00091868	-2.5344	-0.0011546	455.5809114781133	23.457	0.30553	23.457	23.33	23.635	0					10	5	3	0	0	0	0.73472	1	6487	6487		4.4062	2.6639	1	5347000	+		9209	20265	6534	6587	8985	8985					0.056184565008152276
EEKIKQHVLQ	10	Unmodified	_EEKIKQHVLQ_					0	0	0		nc|ENSG00000148814|Q9C0I9-2|LRRC27;ENSG00000148814|ENST00000368614|LRRC27;ENST00000475747.5_1_10:134165051-134188743:+|nuORF;ENST00000462656.5_1_10:134165150-134179835:+|nuORF;ENST00000472556.5_1_10:134165150-134180418:+|nuORF	nc|ENSG00000148814|Q9C0I9-2|LRRC27	nc|ENSG00000148814|Q9C0I9-2|LRRC27	MULTI-MSMS	A375_MHC_IP_R1	1	418.3069763183594	3	417.906705	1250.69829	0.24767	0.0001035	0.58172	0.00024311	0.82939	0.00034661	417.90702334759976	28.497	0.40586	28.497	28.288	28.694	0					17	7	3	0	0	0	0.70012	1	8834	8834		7.4771	1.6936	1	5449900			9210	5762	6535	6588	8986	8986					0.0829644648890735
EEKKEFFK	8	Unmodified	_EEKKEFFK_					0	0	0		tr|U7T3C3|U7T3C3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00377PE=4SV=1	tr|U7T3C3|U7T3C3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00377PE=4SV=1	tr|U7T3C3|U7T3C3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00377PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	543.749755859375	2	542.787307	1083.56006	-0.76056	-0.00041282	-2.6914	-0.0014609	-3.452	-0.0018737	542.7864058435445	42.395	0.40731	43.168	42.962	43.369	0.7724					14	7	3	0	0	0	0.75389	1	15734	15734		19.257	0	1	1900800			9211	29964	6536	6589	8987	8987					0.02162323240418118
EEKKEKMMY	9	Unmodified	_EEKKEKMMY_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-SECPEP	A375_MHC_IP_R1	1	406.2632141113281	3	405.86312	1214.56753	-0.46971	-0.00019064	0.51313	0.00020826	0.043423	1.7624E-05	405.86335199445494	24.452	0.50493	24.452	24.347	24.852	0					16	9	2	0	0	0	0.78753	1	6988	6988		8.1555	8.1555	1	5542400			9212	6220	6537	6590	8988	8988					-0.03117028545807443
EEKKIILTY	9	Unmodified	_EEKKIILTY_					0	0	0		ENST00000421674.5_1_15:44177877-44211195:-|nuORF;nc|ENSG00000171877|Q7Z6J6-2|FRMD5;ENSG00000171877|ENST00000417257|FRMD5	ENST00000421674.5_1_15:44177877-44211195:-|nuORF	ENST00000421674.5_1_15:44177877-44211195:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	569.231689453125	2	568.831714	1135.64888	-0.35448	-0.00020164	0.03601	2.0484E-05	-0.31847	-0.00018116	568.8314760419239	43.892	0.40671	43.892	43.706	44.113	0					19	7	3	0	0	0	0.036758	1	15289	15289		99.755	33.299	1	6359000			9213	7656	6538	6591	8989	8989					0.08647738480090084
EEKKIILTY	9	Unmodified	_EEKKIILTY_					0	0	0		ENST00000421674.5_1_15:44177877-44211195:-|nuORF;nc|ENSG00000171877|Q7Z6J6-2|FRMD5;ENSG00000171877|ENST00000417257|FRMD5	ENST00000421674.5_1_15:44177877-44211195:-|nuORF	ENST00000421674.5_1_15:44177877-44211195:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	569.2315063476562	2	568.831714	1135.64888	-0.24457	-0.00013912	-0.42897	-0.00024401	-0.67354	-0.00038313	568.8312727652185	43.08	0.40465	43.853	43.623	44.028	0.7724					17	7	3	0	0	0	0.23313	1	16034	16034		57.249	11.549	1	4124900			9214	7656	6538	6591	8990	8990					0.08647738480090084
EEKKLKKKSTF	11	Unmodified	_EEKKLKKKSTF_					0	0	0		tr|U7SSH0|U7SSH0_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01631PE=3SV=1	tr|U7SSH0|U7SSH0_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01631PE=3SV=1	tr|U7SSH0|U7SSH0_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01631PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	456.0093994140625	3	455.941527	1364.80275	-0.24892	-0.00011349	4.1947	0.0019125	3.9458	0.001799	455.9440267201251	41.741	0.3082	42.516	42.35	42.659	0.77451					8	5	2	0	0	0	0.73636	1	15549	15549		2.8433	0.4085	1	1287800			9215	29633	6539	6592	8991	8991					0.13494148245581528
EEKKPVKPKL	10	Unmodified	_EEKKPVKPKL_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MSMS	A375_MHC_IP_R1	1	399.6507263183594	3	399.251813	1194.73361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.4206	1	3.4206	2.9206	3.9206	0								0	0	0	0.15637	1	780	780		0.15932	0	1		+		9216	18617	6540	6593	8992	8992					0.14403109016711824
EEKKPVKPKL	10	Unmodified	_EEKKPVKPKL_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MSMS	A375_MHC_IP_R1	1	399.6506042480469	3	399.251813	1194.73361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.2719	1	5.2719	4.7719	5.7719	0								0	0	0	0.15637	1	1203	1203		0.15932	0	1		+		9217	18617	6540	6593	8993	8993					0.14403109016711824
EEKKPVKPKL	10	Unmodified	_EEKKPVKPKL_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MSMS	A375_MHC_IP_R1	1	399.6505126953125	3	399.251813	1194.73361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.3288	1	6.3288	5.8288	6.8288	0								0	0	0	0.15637	1	1446	1446		0.15932	0	1		+		9218	18617	6540	6593	8994	8994					0.14403109016711824
EEKKPVKPKL	10	Unmodified	_EEKKPVKPKL_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MSMS	A375_MHC_IP_R1	1	399.6509094238281	3	399.251813	1194.73361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.8701	1	6.8701	6.3701	7.3701	0								0	0	0	0.15637	1	1565	1565		0.15932	0.01943	1		+		9219	18617	6540	6593	8995	8995					0.14403109016711824
EEKKPVKPKL	10	Unmodified	_EEKKPVKPKL_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MSMS	A375_MHC_IP_R1	1	399.65081787109375	3	399.251813	1194.73361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.3809	1	7.3809	6.8809	7.8809	0								0	0	0	0.15637	1	1686	1686		0.15932	0	1		+		9220	18617	6540	6593	8996	8996					0.14403109016711824
EEKKPVKPKL	10	Unmodified	_EEKKPVKPKL_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MSMS	A375_MHC_IP_R1	1	399.65069580078125	3	399.251813	1194.73361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.8855	1	7.8855	7.3855	8.3855	0								0	0	0	0.15637	1	1807	1807		0.15932	0	1		+		9221	18617	6540	6593	8997	8997					0.14403109016711824
EEKKPVKPKL	10	Unmodified	_EEKKPVKPKL_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MSMS	A375_MHC_IP_R1	1	399.65057373046875	3	399.251813	1194.73361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.132	1	10.132	9.6318	10.632	0								0	0	0	0.15637	1	2319	2319		0.15932	0	1		+		9222	18617	6540	6593	8998	8998					0.14403109016711824
EEKKPVKPKL	10	Unmodified	_EEKKPVKPKL_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MSMS	A375_MHC_IP_R1	1	399.650634765625	3	399.251813	1194.73361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.677	1	10.677	10.177	11.177	0								0	0	0	0.15637	1	2448	2448		0.15932	0	1		+		9223	18617	6540	6593	8999	8999					0.14403109016711824
EEKKPVKPKL	10	Unmodified	_EEKKPVKPKL_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MSMS	A375_MHC_IP_R1	1	399.65081787109375	3	399.251813	1194.73361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.185	1	11.185	10.685	11.685	0								0	0	0	0.15637	1	2566	2566		0.15932	0	1		+		9224	18617	6540	6593	9000	9000					0.14403109016711824
EEKKPVKPKL	10	Unmodified	_EEKKPVKPKL_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MSMS	A375_MHC_IP_R1	1	399.6507568359375	3	399.251813	1194.73361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.317	1	12.317	11.817	12.817	0								0	0	0	0.15637	1	2822	2822		0.15932	0	1		+		9225	18617	6540	6593	9001	9001					0.14403109016711824
EEKLDLFRV	9	Unmodified	_EEKLDLFRV_					0	0	0		nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-SECPEP	A375_MHC_IP_R1	1	574.2000122070312	2	574.819138	1147.62372	-0.34275	-0.00019702	0.49398	0.00028395	0.15123	8.6932E-05	574.8198383963054	65.762	0.56034	65.762	65.411	65.972	0					18	10	3	0	0	0	0.58271	1	23867	23867		20.454	0	1	1567400			9226	9061	6541	6594	9002	9002					0.055816836775193224
EEKLDLFRV	9	Unmodified	_EEKLDLFRV_					0	0	0		nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-MATCH	A375_MHC_IP_R2	2		2	574.819138	1147.62372	-0.16843	-9.6814E-05	1.2708	0.00073046	1.1023	0.00063365	574.8196339922899	64.642	0.45805	65.382	65.157	65.615	0.74023	-0.19004	0.00012226	NaN	30.637	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1359800			9227	9061	6541	6594							0.055816836775193224
EEKLHAKKM	9	Unmodified	_EEKLHAKKM_					0	0	0		ENSG00000110925|ENST00000228515|CSRNP2	ENSG00000110925|ENST00000228515|CSRNP2	ENSG00000110925|ENST00000228515|CSRNP2	MULTI-SECPEP	A375_MHC_IP_R2	2	372.2744445800781	3	371.874348	1112.60121	0.32212	0.00011979	-0.3249	-0.00012082	-0.002782	-1.0345E-06	371.8744394719192	55.17	0.61083	55.921	55.626	56.237	0.75075					14	11	2	0	0	0	0.7911	1	20891	20891		4.5289	4.322	1	1495500			9228	2959	6542	6595	9003	9003					0.049417610082628016
EEKLHQYLE	9	Unmodified	_EEKLHQYLE_					0	0	0			REV__nc|ENSG00000064102|Q9NVM9-2|INTS13	REV__nc|ENSG00000064102|Q9NVM9-2|INTS13	MULTI-SECPEP	A375_MHC_IP_R2	2	594.1849365234375	2	594.798403	1187.58225	-0.55054	-0.00032746	-0.86233	-0.00051291	-1.4129	-0.00084037	595.298978958301	67.466	0.61082	68.202	67.951	68.562	0.73631					16	11	2	0	0	0	0.63327	1	25539	25539		13.042	0	1	1427800	+		9229	16472	6543	6596	9004	9004					-0.004034970818338479
EEKLKTRDRY	10	Unmodified	_EEKLKTRDRY_					0	0	0		ENSG00000111860|ENST00000368491|CEP85L;nc|ENSG00000111860|Q5SZL2-4|CEP85L	ENSG00000111860|ENST00000368491|CEP85L	ENSG00000111860|ENST00000368491|CEP85L	MULTI-MSMS	A375_MHC_IP_R2	2	446.97650146484375	3	446.577247	1336.70991	-0.72795	-0.00032509	-0.54348	-0.00024271	-1.2714	-0.00056779	446.57693563608774	24.611	0.65933	25.254	25.009	25.668	0.64368					25	10	3	0	0	0	0.72159	1	8120	8120		2.6312	0.37851	1	12613000			9230	3035	6544	6597	9005	9005					0.055026435122499606
EEKLMVML	8	Unmodified	_EEKLMVML_					0	0	0			REV__tr|U7SY24|U7SY24_FUSNUAspartate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aspSPE=3SV=1	REV__tr|U7SY24|U7SY24_FUSNUAspartate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aspSPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	496.7001037597656	2	496.761389	991.508225	0.020541	1.0204E-05	-1.1475	-0.00057005	-1.127	-0.00055985	496.7606496170619	48.519	0.76002	48.519	48.173	48.933	0					24	14	2	0	0	0	0.70843	1	17139	17139		32.117	0	1	6062500	+		9231	28625	6545	6598	9006	9006					0.012131202306704836
EEKLRQVW	8	Unmodified	_EEKLRQVW_					0	0	0			REV__ENSG00000143222|ENST00000368003|UFC1	REV__ENSG00000143222|ENST00000368003|UFC1	MULTI-SECPEP	A375_MHC_IP_R2	2	543.684326171875	2	544.298373	1086.58219	-1.1264	-0.00061309	1.7441	0.00094932	0.61772	0.00033622	544.2993071971043	61.328	0.60384	62.073	61.668	62.272	0.74503					15	11	2	0	0	0	0.94479	1	23213	23213		8.5933	1.304	1	966230	+		9232	19342	6546	6599	9007	9007					0.04236547708865146
EEKLWQWY	8	Unmodified	_EEKLWQWY_					0	0	0			REV__DUSP22|p.R147W|2|0.19|ENSG00000112679|chr6:348772-348772|C/T|missense_variant	REV__DUSP22|p.R147W|2|0.19|ENSG00000112679|chr6:348772-348772|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	590.7742919921875	2	591.284931	1180.55531	-0.207	-0.0001224	0.018832	1.1135E-05	-0.18817	-0.00011126	591.2849958794935	88.86	0.65954	88.86	88.561	89.221	0					30	12	3	0	0	0	0.94479	1	32724	32724		13.508	0	1	7152000	+		9233	16045	6547	6600	9008	9008					-0.027745609023213547
EEKMARRLL	9	Unmodified	_EEKMARRLL_					0	0	0		nc|ENSG00000120729|Q9UBF9|MYOT;ENSG00000120729|ENST00000239926|MYOT;PALLD|p.R707K|1|0.43|ENSG00000129116|chr4:168894598-168894598|G/A|missense_variant	nc|ENSG00000120729|Q9UBF9|MYOT	nc|ENSG00000120729|Q9UBF9|MYOT	MULTI-MSMS	A375_MHC_IP_R1	1	574.3515625	2	573.326608	1144.63866	-0.18613	-0.00010671	-0.75483	-0.00043277	-0.94096	-0.00053948	573.3257846889898	102.54	0.91151	102.54	102.2	103.12	0					44	17	4	0	0	0	0.64971	1	37632	37632		11.64	4.9171	1	4931000			9234	3685	6548	6601	9009	9009					0.0721285227386943
EEKMKKLQAV	10	Unmodified	_EEKMKKLQAV_					0	0	0		JAKMIP2|p.E84K|1|0.17|ENSG00000176049|chr5:147661325-147661325|C/T|missense_variant	JAKMIP2|p.E84K|1|0.17|ENSG00000176049|chr5:147661325-147661325|C/T|missense_variant	JAKMIP2|p.E84K|1|0.17|ENSG00000176049|chr5:147661325-147661325|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	602.4903564453125	2	602.341923	1202.66929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.084	1	57.835	57.335	58.335	0.75015								0	0	0	0.15308	1	21583	21583		10.824	0.75	1				9235	14185	6549	6602	9010	9010					0.07606585868256843
EEKMKRLV	8	Unmodified	_EEKMKRLV_					0	0	0			REV__nc|ENSG00000215296|A8MYB1|TMCO5B	REV__nc|ENSG00000215296|A8MYB1|TMCO5B	MSMS	A375_MHC_IP_R1	1	516.6949462890625	2	516.797152	1031.57975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.08	1	124.08	123.58	124.58	0								0	0	0	0.16876	1	46562	46562		12.532	3.1841	1		+		9236	27494	6550	6603	9011	9011					0.06522375979534445
EEKMRKEEE	9	Unmodified	_EEKMRKEEE_					0	0	0		nc|ENSG00000105048|P13805-2|TNNT1;nc|ENSG00000105048|P13805-3|TNNT1;ENSG00000105048|ENST00000588981|TNNT1	nc|ENSG00000105048|P13805-2|TNNT1	nc|ENSG00000105048|P13805-2|TNNT1	MULTI-MSMS	A375_MHC_IP_R2	2	403.6109924316406	3	403.192294	1206.55505	-0.33399	-0.00013466	-0.71524	-0.00028838	-1.0492	-0.00042304	403.5263702854248	22.955	0.25493	23.586	23.368	23.623	0.63014					6	4	2	0	0	0	0.69317	1	7268	7268		7.609	2.3121	1	2239500			9237	2563	6551	6604	9012	9012					-0.03996348684495388
EEKNEDELEAD	11	Unmodified	_EEKNEDELEAD_					0	0	0			REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2	REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2	MSMS	A375_MHC_IP_R1	1	660.8255004882812	2	660.775519	1319.53648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.457	1	24.457	23.957	24.957	0								0	0	0	0.16179	1	6948	6948		9.3831	0.63772	1		+		9238	16158	6552	6605	9013	9013					-0.11050231845365488
EEKNEDELEAD	11	Unmodified	_EEKNEDELEAD_					0	0	0			REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2	REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2	MSMS	A375_MHC_IP_R1	1	661.159423828125	2	660.775519	1319.53648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.513	1	24.513	24.013	25.013	0								0	0	0	0.16179	1	6975	6975		9.3831	1.473	1		+		9239	16158	6552	6605	9014	9014					-0.11050231845365488
EEKNGEFEV	9	Unmodified	_EEKNGEFEV_					0	0	0			REV__nc|ENSG00000134121|O00533|CHL1	REV__nc|ENSG00000134121|O00533|CHL1	MULTI-MSMS	A375_MHC_IP_R1	1	541.2134399414062	2	540.745836	1079.47712	-0.82921	-0.00044839	-0.85092	-0.00046013	-1.6801	-0.00090852	540.7456537164635	66.403	0.56079	66.403	66.173	66.734	0					16	10	2	0	0	0	0.58047	1	24033	24033		15.847	1.2655	1	1176100	+		9240	18754	6553	6606	9015	9015					-0.05944038278221342
EEKNGNEYY	9	Unmodified	_EEKNGNEYY_					0	0	0			REV__tr|U7T1X1|U7T1X1_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00620PE=4SV=1	REV__tr|U7T1X1|U7T1X1_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00620PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	572.6654663085938	2	573.240918	1144.46728	-0.62006	-0.00035544	0.24413	0.00013995	-0.37593	-0.0002155	573.2414458519369	26.458	0.55973	27.118	26.957	27.517	0.65992					26	10	3	0	0	0	0.73363	1	8925	8925		10.824	0	1	10998000	+		9241	28709	6554	6607	9016	9016					-0.0991722628361913
EEKNGSQSGF	10	Unmodified	_EEKNGSQSGF_					0	0	0		ENST00000427259.1_1_9:98632604-98637316:-|nuORF	ENST00000427259.1_1_9:98632604-98637316:-|nuORF	ENST00000427259.1_1_9:98632604-98637316:-|nuORF	MSMS	A375_MHC_IP_R2	2	541.6434326171875	2	541.741085	1081.46762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.552	1	61.297	60.797	61.797	0.74503								0	0	0	0.15158	1	22930	22930		14.838	0.25658	1				9242	11818	6555	6608	9017	9017					-0.06985806563739061
EEKNLDLLY	9	Unmodified	_EEKNLDLLY_					0	0	0		ENST00000565532.5_1_16:66762088-66770076:-|nuORF;nc|ENSG00000135720|O43237-2|DYNC1LI2;ENSG00000135720|ENST00000258198|DYNC1LI2	ENST00000565532.5_1_16:66762088-66770076:-|nuORF	ENST00000565532.5_1_16:66762088-66770076:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	569.6968383789062	2	568.795329	1135.5761	-0.11362	-6.4627E-05	-0.41428	-0.00023564	-0.5279	-0.00030027	568.7950081897385	71.706	0.4518	71.706	71.516	71.968	0					14	8	2	0	0	0	0.17338	1	26092	26092		39.95	1.9757	1	4639000			9243	4707	6556	6609	9018	9018					0.01373984686665608
EEKNLLIKF	9	Unmodified	_EEKNLLIKF_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	A375_MHC_IP_R2	2	567.14794921875	2	567.331882	1132.64921	-0.80343	-0.00045581	2.3714	0.0013454	1.568	0.00088957	567.3328808436389	25.076	0.20288	25.719	25.619	25.822	0.64368					5	3	2	0	0	0	0.78348	1	8296	8296		1.8442	0	1	1237200			9244	6242	6557	6610	9019	9019					0.0881915819995811
EEKNRSDPDA	10	Unmodified	_EEKNRSDPDA_					0	0	0			REV__ENST00000395094.3_1_16:30543822-30545758:-|nuORF	REV__ENST00000395094.3_1_16:30543822-30545758:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	580.19287109375	2	580.762549	1159.51054	-0.91385	-0.00053073	2.3331	0.001355	1.4192	0.00082423	581.26647752617	37.171	0.30362	37.942	37.767	38.07	0.7709					6	5	2	0	0	0	0.88918	1	13601	13601		18.146	5.1039	1	623910	+		9245	24316	6558	6611	9020	9020					-0.06283036506329154
EEKQKLLKW	9	Unmodified	_EEKQKLLKW_					0	0	0		ENST00000527401.5_1_11:45957138-45987102:-|nuORF;nc|ENSG00000135365|Q96BD5-2|PHF21A;nc|ENSG00000135365|Q96BD5|PHF21A;ENSG00000135365|ENST00000676320|PHF21A	ENST00000527401.5_1_11:45957138-45987102:-|nuORF	ENST00000527401.5_1_11:45957138-45987102:-|nuORF	MSMS	A375_MHC_IP_R1	1	401.2839050292969	3	401.236163	1200.68666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.507	1	19.507	19.007	20.007	0								0	0	0	0.15486	1	4858	4858		8.1555	0.21013	1				9246	4675	6559	6612	9021	9021					0.09434249465562061
EEKRAAEERQ	10	Unmodified	_EEKRAAEERQ_					0	0	0		ENSG00000122786|ENST00000361675|CALD1	ENSG00000122786|ENST00000361675|CALD1	ENSG00000122786|ENST00000361675|CALD1	MULTI-MSMS	A375_MHC_IP_R2	2	415.8759460449219	3	415.877586	1244.61093	-0.30594	-0.00012724	1.5988	0.00066489	1.2928	0.00053765	416.21278511640844	19.296	0.55756	19.899	19.683	20.241	0.60308					22	10	3	0	0	0	0.68638	1	5921	5921		14.405	2.8875	1	2129200			9247	3810	6560	6613	9022	9022					-0.0015937945267978648
EEKRWLKI	8	Unmodified	_EEKRWLKI_					0	0	0			REV__nc|ENSG00000105792|A5D8W1-2|CFAP69	REV__nc|ENSG00000105792|A5D8W1-2|CFAP69	MULTI-SECPEP	A375_MHC_IP_R2	2	368.2851257324219	3	367.885353	1100.63423	0.26419	9.719E-05	0.6107	0.00022467	0.87489	0.00032186	367.8854930304863	69.882	0.50906	70.616	70.335	70.844	0.73421					21	9	3	0	0	0	0.91117	1	26496	26496		27.629	12.672	1	4065100	+		9248	17410	6561	6614	9023	9023					0.08793711122598324
EEKSDKKIF	9	Unmodified	_EEKSDKKIF_					0	0	0			REV__ENST00000557184.1_1_14:54976944-54997777:+|nuORF	REV__ENST00000557184.1_1_14:54976944-54997777:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	562.1985473632812	2	562.303321	1122.59209	0.06192	3.4818E-05	-0.74107	-0.00041671	-0.67915	-0.00038189	562.8056983185759	49.092	0.60704	49.092	48.78	49.387	0					27	11	3	0	0	0	0.74651	1	17400	17400		4.756	0	1	7477800	+		9249	17099	6562	6615	9024	9024					0.035696909235639396
EEKSGDSFVT	10	Unmodified	_EEKSGDSFVT_					0	0	0			REV__JPH1|p.P322S|1|0.32|ENSG00000104369|chr8:74315036-74315036|G/A|missense_variant	REV__JPH1|p.P322S|1|0.32|ENSG00000104369|chr8:74315036-74315036|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	549.7025756835938	2	549.751118	1097.48768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.081	1	69.081	68.581	69.581	0								0	0	0	0.15353	1	25062	25062		9.3831	0.78985	1		+		9250	26814	6563	6616	9025	9025					-0.057160556237931814
EEKSIDLIQKW	11	Unmodified	_EEKSIDLIQKW_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	MULTI-MSMS	A375_MHC_IP_R1	1	695.2739868164062	2	694.874642	1387.73473	-0.10343	-7.1871E-05	-0.44548	-0.00030955	-0.54891	-0.00038142	694.8743489441154	69.401	0.40733	69.401	69.121	69.529	0					12	7	2	0	0	0	0.00015247	1	25195	25195		133.12	96.05	1	2792800			9251	6469	6564	6617	9026	9026					0.056372785949406534
EEKSIDLIQKW	11	Unmodified	_EEKSIDLIQKW_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	MULTI-SECPEP	A375_MHC_IP_R1	1	464.31988525390625	3	463.58552	1387.73473	0.27767	0.00012872	-0.44943	-0.00020835	-0.17176	-7.9625E-05	463.9196223041252	69.378	0.56017	69.378	69.121	69.681	0					18	10	2	0	0	0	0.32105	1	25153	25153		62.894	54.608	1	8937400			9252	6469	6564	6617	9027	9027					0.056372785949406534
EEKSIDLIQKW	11	Unmodified	_EEKSIDLIQKW_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	MULTI-MSMS	A375_MHC_IP_R2	2	463.9853820800781	3	463.58552	1387.73473	-0.4568	-0.00021177	0.074856	3.4702E-05	-0.38195	-0.00017707	463.58549064932146	68.732	0.60698	69.467	69.121	69.728	0.73512					22	11	2	0	0	0	0.23944	1	26003	26003		35.996	28.15	1	9194600			9253	6469	6564	6617	9028	9028					0.056372785949406534
EEKSIDLIQKW	11	Unmodified	_EEKSIDLIQKW_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	MULTI-MSMS	A375_MHC_IP_R2	2	695.2741088867188	2	694.874642	1387.73473	-0.58184	-0.0004043	0.10225	7.1052E-05	-0.47958	-0.00033325	694.8746551468864	68.731	0.3536	69.466	69.221	69.575	0.73511					11	6	2	0	0	0	2.1056E-12	1	26037	26037		168	130.93	1	1997400			9254	6469	6564	6617	9029	9029					0.056372785949406534
EEKSLYILRAK	11	Unmodified	_EEKSLYILRAK_					0	0	0		ENST00000505045.1_1_5:26903562-26988455:-|nuORF;ENSG00000113100|ENST00000231021|CDH9	ENST00000505045.1_1_5:26903562-26988455:-|nuORF	ENST00000505045.1_1_5:26903562-26988455:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	450.64202880859375	3	450.59776	1348.77145	-0.38646	-0.00017414	0.35912	0.00016182	-0.027341	-1.232E-05	450.5980114796329	24.026	0.50859	24.026	23.787	24.296	0					12	9	2	0	0	0	0.73679	1	6632	6632		2.4348	0.18206	1	3007100			9255	3125	6565	6618	9030	9030					0.11101575211500858
EEKSNRLSW	9	Unmodified	_EEKSNRLSW_					0	0	0			REV__nc|ENSG00000100170|P13866-2|SLC5A1	REV__nc|ENSG00000100170|P13866-2|SLC5A1	MULTI-MSMS	A375_MHC_IP_R2	2	574.695556640625	2	574.78837	1147.56219	-0.073666	-4.2342E-05	-0.10883	-6.2554E-05	-0.18249	-0.0001049	575.2900659669848	46.546	0.35869	47.311	47.108	47.466	0.76518					10	6	2	0	0	0	0.4867	1	17369	17369		20.454	2.3073	1	2319500	+		9256	17056	6566	6619	9031	9031					-0.005692480217476259
EEKVEQGGERW	11	Unmodified	_EEKVEQGGERW_					0	0	0		nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4;nc|ENSG00000080493|Q9Y6R1-3|SLC4A4;nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	nc|ENSG00000080493|Q9Y6R1-2|SLC4A4	nc|ENSG00000080493|Q9Y6R1-2|SLC4A4	MULTI-MSMS	A375_MHC_IP_R1	1	674.219482421875	2	673.820398	1345.62624	-0.52993	-0.00035708	-0.18331	-0.00012352	-0.71324	-0.0004806	673.8201713285764	42.361	0.4552	42.361	42.082	42.537	0					14	8	2	0	0	0	0.72494	1	14714	14714		13.615	1.3742	1	2069800			9257	1713	6567	6620	9032	9032					-0.03274512655457329
EEKVRVDSY	9	Unmodified	_EEKVRVDSY_					0	0	0			REV__nc|ENSG00000136715|Q9H0E3|SAP130	REV__nc|ENSG00000136715|Q9H0E3|SAP130	MULTI-SECPEP	A375_MHC_IP_R1	1	563.1827392578125	2	562.782753	1123.55095	0.07305	4.1112E-05	-0.95285	-0.00053625	-0.8798	-0.00049513	562.7827723041136	49.047	0.40416	49.047	48.831	49.235	0					11	7	2	0	0	0	0.63327	1	17388	17388		18.146	0	1	1936000	+		9258	18953	6568	6621	9033	9033					-0.005880701158957891
EEKVRVDSY	9	Unmodified	_EEKVRVDSY_					0	0	0			REV__nc|ENSG00000136715|Q9H0E3|SAP130	REV__nc|ENSG00000136715|Q9H0E3|SAP130	MULTI-SECPEP	A375_MHC_IP_R1	1	562.2109375	2	562.782753	1123.55095	-0.49694	-0.00027967	0.4724	0.00026586	-0.024543	-1.3812E-05	562.7828016601394	33.266	0.25389	33.266	33.14	33.393	0					6	4	2	0	0	0	0.50702	1	10896	10896		32.305	6.9062	1	1762800	+		9259	18953	6568	6621	9034	9034					-0.005880701158957891
EEKVRVDSY	9	Unmodified	_EEKVRVDSY_					0	0	0			REV__nc|ENSG00000136715|Q9H0E3|SAP130	REV__nc|ENSG00000136715|Q9H0E3|SAP130	MULTI-SECPEP	A375_MHC_IP_R2	2	562.2108154296875	2	562.782753	1123.55095	-0.60173	-0.00033864	0.2554	0.00014374	-0.34632	-0.0001949	562.7828280809467	32.566	0.40669	33.303	33.112	33.518	0.73692					11	7	2	0	0	0	0.63327	1	11675	11675		24.021	9.1823	1	1987100	+		9260	18953	6568	6621	9035	9035					-0.005880701158957891
EEKVRVDSY	9	Unmodified	_EEKVRVDSY_					0	0	0			REV__nc|ENSG00000136715|Q9H0E3|SAP130	REV__nc|ENSG00000136715|Q9H0E3|SAP130	MULTI-MATCH	A375_MHC_IP_R2	2		2	562.782753	1123.55095	-0.50197	-0.0002825	-0.39852	-0.00022428	-0.90049	-0.00050678	563.2839896677989	48.315	0.40244	49.073	48.829	49.231	0.75736	0.012985	0.00018255	NaN	13.042	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2411000	+		9261	18953	6568	6621							-0.005880701158957891
EEKVSEIFNSL	11	Unmodified	_EEKVSEIFNSL_					0	0	0			REV__ENSG00000183808|ENST00000520560|RBM12B	REV__ENSG00000183808|ENST00000520560|RBM12B	MULTI-SECPEP	A375_MHC_IP_R1	1	431.9420166015625	3	432.222359	1293.64525	-0.0097724	-4.2239E-06	1.7421	0.00075295	1.7323	0.00074873	432.22290970926883	20.698	0.206	20.698	20.587	20.793	0					5	3	2	0	0	0	0.99331	1	5335	5335		2.4348	0	1	648620	+		9262	21781	6569	6622	9036	9036					0.010170239155968375
EEKWLSSL	8	Unmodified	_EEKWLSSL_					0	0	0		ENST00000567567.5_1_15:31233675-31258111:-|nuORF;ENSG00000166912|ENST00000435680|MTMR10;ENST00000568547.5_1_15:31233444-31253097:-|nuORF;ENST00000565728.5_1_15:31239263-31253097:-|nuORF;ENST00000568604.5_1_15:31235080-31253097:-|nuORF;nc|ENSG00000166912|Q9NXD2-2|MTMR10	ENST00000567567.5_1_15:31233675-31258111:-|nuORF	ENST00000567567.5_1_15:31233675-31258111:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	496.6165466308594	2	496.258382	990.502212	-0.34523	-0.00017132	0.83086	0.00041232	0.48563	0.000241	496.25801596724267	47.761	0.8097	48.522	48.123	48.933	0.76127					38	15	3	0	0	0	0.72008	1	17931	17931		28.487	0	1	5715800			9263	7132	6570	6623	9037	9037					0.006580613150163117
EEKYVQWE	8	Unmodified	_EEKYVQWE_					0	0	0			REV__ENST00000373899.3_1_10:60146421-60154831:+|nuORF	REV__ENST00000373899.3_1_10:60146421-60154831:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	370.5923156738281	3	370.84159	1109.50294	0.0087618	3.2493E-06	0.54376	0.00020165	0.55252	0.0002049	370.84221689486753	26.754	0.65642	26.754	26.271	26.928	0					21	12	2	0	0	0	0.972	1	7974	7974		10.074	0.6908	1	2876800	+		9264	17513	6571	6624	9038	9038					-0.04743144035955993
EEKYWPEW	8	Unmodified	_EEKYWPEW_					0	0	0			REV__ARSJ|p.G552E|1|0.53|ENSG00000180801|chr4:113902419-113902419|C/T|missense_variant	REV__ARSJ|p.G552E|1|0.53|ENSG00000180801|chr4:113902419-113902419|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	584.1613159179688	2	583.761289	1165.50803	-0.32801	-0.00019148	-1.0385	-0.00060625	-1.3665	-0.00079774	583.7607703791621	68.637	0.55569	69.372	69.07	69.626	0.73511					22	10	3	0	0	0	0.76248	1	25987	25987		16.942	3.8998	1	3790300	+		9265	15456	6572	6625	9039	9039					-0.0681084017332978
EEKYWPEW	8	Unmodified	_EEKYWPEW_					0	0	0			REV__ARSJ|p.G552E|1|0.53|ENSG00000180801|chr4:113902419-113902419|C/T|missense_variant	REV__ARSJ|p.G552E|1|0.53|ENSG00000180801|chr4:113902419-113902419|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	583.2481689453125	2	583.761289	1165.50803	-0.32801	-0.00019148	-1.0385	-0.00060625	-1.3665	-0.00079774	583.7607703791621	68.637	0.55569	69.372	69.07	69.626	0.73511					22	10	3	0	0	0	0.972	1	25980	25980		8.5933	0.68312	1	3790300	+		9266	15456	6572	6625	9040	9040					-0.0681084017332978
EELAEHGIF	9	Unmodified	_EELAEHGIF_					0	0	0		ENSG00000159079|ENST00000290155|CFAP298	ENSG00000159079|ENST00000290155|CFAP298	ENSG00000159079|ENST00000290155|CFAP298	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1535034179688	2	522.753464	1043.49238	-0.46559	-0.00024339	-0.76371	-0.00039923	-1.2293	-0.00064262	522.7534152703404	36.097	0.40645	36.097	35.83	36.236	0					12	7	2	0	0	0	0.52144	1	12075	12075		16.942	3.4344	1	1625700			9267	6346	6573	6626	9041	9041					-0.027631266903881624
EELAEHQVPV	10	Unmodified	_EELAEHQVPV_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	A375_MHC_IP_R1	1	575.16259765625	2	575.790578	1149.5666	-0.15901	-9.1557E-05	-1.6558	-0.00095341	-1.8148	-0.001045	575.789283789711	89.222	0.86131	89.222	89.069	89.931	0					19	16	2	0	0	0	0.78945	1	32898	32898		9.3831	5.0539	1	828460			9268	4099;14587	6574	6627	9042	9042					-0.002197835988681618
EELAEWQKRY	10	Unmodified	_EELAEWQKRY_					0	0	0		ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MULTI-SECPEP	A375_MHC_IP_R2	2	450.634521484375	3	451.226215	1350.65681	-0.50756	-0.00022902	0.14183	6.3999E-05	-0.36572	-0.00016502	451.2261953658865	41.211	0.30399	41.986	41.845	42.149	0.77451					7	5	2	0	0	0	0.91643	1	15344	15344		12.175	12.175	1	2713500			9269	9248	6575	6628	9043	9043					-0.004487342704351249
EELAKDQKY	9	Unmodified	_EELAKDQKY_					0	0	0		nc|ENSG00000198910|P32004-3|L1CAM;nc|ENSG00000198910|P32004-2|L1CAM;ENSG00000198910|ENST00000370060|L1CAM;L1CAM|p.P372S|1|0.28|ENSG00000198910|chrX:153869812-153869812|G/A|missense_variant	nc|ENSG00000198910|P32004-3|L1CAM	nc|ENSG00000198910|P32004-3|L1CAM	MULTI-MSMS	A375_MHC_IP_R1	1	563.681396484375	2	562.285128	1122.5557	-0.44919	-0.00025258	0.11806	6.6384E-05	-0.33113	-0.00018619	562.2851628386769	74.729	1.1661	74.729	74.298	75.464	0					74	22	5	0	0	0	0.64808	1	27105	27105		11.64	0.14559	1	79667000			9270	9365	6576	6629	9044	9044					-0.0006718597312556085
EELALEVEQA	10	Unmodified	_EELALEVEQA_					0	0	0			REV__ENSG00000198707|ENST00000552810|CEP290	REV__ENSG00000198707|ENST00000552810|CEP290	MULTI-SECPEP	A375_MHC_IP_R2	2	565.1637573242188	2	565.782418	1129.55028	-0.74967	-0.00042415	-0.4681	-0.00026484	-1.2178	-0.00068899	565.7822359291581	57.639	0.75999	58.388	58.019	58.779	0.74894					17	14	2	0	0	0	0.74754	1	21787	21787		29.082	3.6823	1	1186700	+		9271	22399	6577	6630	9045	9045					-0.009309095556091052
EELAQGRLY	9	Unmodified	_EELAQGRLY_					0	0	0		ENSG00000082212|ENST00000321341|ME2	ENSG00000082212|ENST00000321341|ME2	ENSG00000082212|ENST00000321341|ME2	MULTI-SECPEP	A375_MHC_IP_R2	2	540.179931640625	2	539.780013	1077.54547	-0.93505	-0.00050472	0.010812	5.8361E-06	-0.92424	-0.00049889	539.7800285429973	45.191	0.50749	45.956	45.694	46.201	0.76519					13	9	2	0	0	0	0.14422	1	16907	16907		52.268	18.166	1	1882400			9272	1755	6578	6631	9046	9046					0.009802510923009322
EELAQYQKW	9	Unmodified	_EELAQYQKW_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	A375_MHC_IP_R1	1	598.1927490234375	2	597.793121	1193.57169	-0.36061	-0.00021557	-0.29946	-0.00017901	-0.66007	-0.00039458	597.7928425296429	55.64	0.56191	55.64	55.279	55.841	0					21	10	3	0	0	0	0.01001	1	19885	19885		123.45	89.049	1	4204000			9273	2781	6579	6632	9047	9047					-0.01735479736248635
EELAQYQKW	9	Unmodified	_EELAQYQKW_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MATCH	A375_MHC_IP_R2	2		2	597.793121	1193.57169	-0.70179	-0.00041953	-0.15906	-9.5084E-05	-0.86085	-0.00051461	597.7929607092472	54.982	0.6636	55.732	55.37	56.034	0.75075	0.046059	6.7689E-05	NaN	123.45	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3714200			9274	2781	6579	6632							-0.01735479736248635
EELCRLALV	9	Unmodified	_EELCRLALV_					0	0	0			REV__ENSG00000239697|ENST00000293825|TNFSF12	REV__ENSG00000239697|ENST00000293825|TNFSF12	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1586303710938	2	523.289159	1044.56377	-0.82028	-0.00042924	-0.25153	-0.00013163	-1.0718	-0.00056087	523.2889984470208	23.881	0.6103	24.511	24.029	24.64	0.63014					20	11	2	0	0	0	0.73363	1	7544	7544		15.847	3.3156	1	6790500	+		9275	22772	6580	6633	9048	9048					0.04326669742613376
EELDEAREC	9	Unmodified	_EELDEAREC_					0	0	0		nc|ENSG00000006555|Q5TAA0-2|TTC22;ENSG00000006555|ENST00000371276|TTC22	nc|ENSG00000006555|Q5TAA0-2|TTC22	nc|ENSG00000006555|Q5TAA0-2|TTC22	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6773681640625	2	547.226953	1092.43935	-0.60932	-0.00033344	-1.9893	-0.0010886	-2.5986	-0.001422	547.2257301031216	76.486	0.40337	76.486	76.269	76.673	0					11	7	2	0	0	0	0.75466	1	27933	27933		4.3292	0	1	1348900			9276	918	6581	6634	9049	9049					-0.1031687253534983
EELDEFRDD	9	Unmodified	_EELDEFRDD_					0	0	0			REV__ENST00000468963.1_1_9:139301473-139302406:-|nuORF	REV__ENST00000468963.1_1_9:139301473-139302406:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	584.6431274414062	2	584.243657	1166.47276	-0.4224	-0.00024679	0.019865	1.1606E-05	-0.40254	-0.00023518	584.2435495555083	45.835	1.0605	46.6	46.201	47.262	0.76519					37	20	3	0	0	0	0.71541	1	17160	17160		16.942	1.0951	1	6217700	+		9277	20614	6582	6635	9050	9050					-0.10381547491806487
EELDERGHTLY	11	Unmodified	_EELDERGHTLY_					0	0	0		nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-MSMS	A375_MHC_IP_R1	1	454.94903564453125	3	454.549246	1360.62591	-0.056937	-2.588E-05	-0.31272	-0.00014215	-0.36966	-0.00016803	454.54907104752357	71.501	0.55579	71.501	71.159	71.715	0					14	10	2	0	0	0	0.64288	1	25974	25974		19.987	7.8122	1	3013600			9278	6941	6583	6636	9051	9051					-0.03997932375318669
EELDERGHTLY	11	Unmodified	_EELDERGHTLY_					0	0	0		nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-MSMS	A375_MHC_IP_R2	2	454.9490661621094	3	454.549246	1360.62591	-0.26283	-0.00011947	-0.50693	-0.00023043	-0.76976	-0.00034989	454.548990674271	70.768	0.55656	71.502	71.149	71.706	0.73421					22	10	3	0	0	0	0.68072	1	26830	26830		17.049	1.5101	1	4211500			9279	6941	6583	6636	9052	9052					-0.03997932375318669
EELDFDRPL	9	Unmodified	_EELDFDRPL_					0	0	0			REV__ENSG00000158486|ENST00000698260|DNAH3	REV__ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	A375_MHC_IP_R1	1	567.6771240234375	2	567.277303	1132.54005	-0.4013	-0.00022765	0.27278	0.00015474	-0.12852	-7.2908E-05	567.2772529102427	61.05	0.51003	61.05	60.821	61.331	0					17	9	2	0	0	0	0.25276	1	22016	22016		34.102	0	1	6635500	+		9280	20079	6584	6637	9053	9053					-0.020914724902013404
EELDFDRPL	9	Unmodified	_EELDFDRPL_					0	0	0			REV__ENSG00000158486|ENST00000698260|DNAH3	REV__ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	A375_MHC_IP_R2	2	567.6769409179688	2	567.277303	1132.54005	-0.69028	-0.00039158	0.053478	3.0337E-05	-0.6368	-0.00036124	567.2772733482673	60.338	0.96717	61.083	60.751	61.718	0.74503					26	18	2	0	0	0	0.11296	1	22822	22822		48.346	17.709	1	11048000	+		9281	20079	6584	6637	9054	9054					-0.020914724902013404
EELDFQKNI	9	Unmodified	_EELDFQKNI_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-MSMS	A375_MHC_IP_R1	1	568.6849365234375	2	568.285128	1134.5557	-0.36473	-0.00020727	0.18397	0.00010455	-0.18076	-0.00010272	568.2851968187068	60.861	1.5305	60.861	60.464	61.994	0					77	29	5	0	0	0	3.9462E-11	3	21847	21847;21977;22105		231.73	131.93	1	147520000			9282	6442	6585	6638	9055;9056;9057	9055					-0.006191859731416116
EELDFQKNI	9	Unmodified	_EELDFQKNI_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-MSMS	A375_MHC_IP_R2	2	568.6846923828125	2	568.285128	1134.5557	-0.68275	-0.000388	0.1228	6.9785E-05	-0.55996	-0.00031821	568.285211772001	60.117	1.4707	60.864	60.501	61.972	0.74714					83	28	5	0	0	0	0.0002001	3	22693	22693;22767;23107		206.75	95.462	1	159760000			9283	6442	6585	6638	9058;9059;9060	9058					-0.006191859731416116
EELDFQKNIY	10	Unmodified	_EELDFQKNIY_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-MSMS	A375_MHC_IP_R1	1	650.216552734375	2	649.816793	1297.61903	-0.29577	-0.0001922	0.076889	4.9964E-05	-0.21888	-0.00014223	649.8167941470444	70.656	0.92168	70.656	70.341	71.262	0					62	17	6	0	0	0	0.0044674	2	25831	25604;25831		103.35	79.333	1	77974000			9284	6442	6586	6639	9061;9062	9062					-0.017872452558776786
EELDFQKNIY	10	Unmodified	_EELDFQKNIY_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-MSMS	A375_MHC_IP_R2	2	650.2177734375	2	649.816793	1297.61903	-0.65686	-0.00042684	0.011914	7.7421E-06	-0.64494	-0.00041909	649.8167821315886	70.082	0.96616	70.816	70.386	71.352	0.7342					57	18	5	0	0	0	3.2914E-05	1	26516	26516		171.46	117.63	1	101260000			9285	6442	6586	6639	9063	9063					-0.017872452558776786
EELDFSQKVIE	11	Unmodified	_EELDFSQKVIE_					0	0	0			REV__ENSG00000154258|ENST00000340001|ABCA9	REV__ENSG00000154258|ENST00000340001|ABCA9	MSMS	A375_MHC_IP_R1	1	446.6260986328125	3	446.22588	1335.65581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.487	1	71.487	70.987	71.987	0								0	0	0	0.16247	1	25975	25975		5.8681	1.7515	1		+		9286	19874	6587	6640	9064	9064					0.0014100657001563377
EELDGLFRRY	10	Unmodified	_EELDGLFRRY_					0	0	0		ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D	ENSG00000116604|ENST00000348159|MEF2D	ENSG00000116604|ENST00000348159|MEF2D	MULTI-MSMS	A375_MHC_IP_R1	1	433.623046875	3	433.222693	1296.64625	0.0089717	3.8867E-06	-0.46504	-0.00020147	-0.45607	-0.00019758	433.22257468266514	71.414	3.0422	71.414	70.648	73.69	0					174	59	6	0	0	0	0.050548	6	25863	25863;25878;26099;26401;26501;26602		57.108	17.895	1	556900000			9287	3410	6588	6641	9065;9066;9067;9068;9069;9070	9065					0.009792830751621295
EELDGLFRRY	10	Unmodified	_EELDGLFRRY_					0	0	0		ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D	ENSG00000116604|ENST00000348159|MEF2D	ENSG00000116604|ENST00000348159|MEF2D	MULTI-MSMS	A375_MHC_IP_R1	1	649.7299194335938	2	649.330402	1296.64625	-0.16557	-0.00010751	-0.56162	-0.00036468	-0.72719	-0.00047219	649.330010239176	71.396	1.6227	71.396	70.902	72.524	0					88	31	5	0	0	0	0.086961	2	26100	25909;26100		66.457	18.708	1	171850000			9288	3410	6588	6641	9071;9072	9072					0.009792830751621295
EELDGLFRRY	10	Unmodified	_EELDGLFRRY_					0	0	0		ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D	ENSG00000116604|ENST00000348159|MEF2D	ENSG00000116604|ENST00000348159|MEF2D	MULTI-MSMS	A375_MHC_IP_R2	2	433.62255859375	3	433.222693	1296.64625	-0.29463	-0.00012764	-0.46983	-0.00020354	-0.76446	-0.00033118	433.2225637067104	70.693	2.4814	71.427	71.099	73.58	0.73421					160	48	6	0	0	0	0.040108	4	26963	26742;26963;27187;27335		59.052	13.03	1	851400000			9289	3410	6588	6641	9073;9074;9075;9076	9074					0.009792830751621295
EELDGLFRRY	10	Unmodified	_EELDGLFRRY_					0	0	0		ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D	ENSG00000116604|ENST00000348159|MEF2D	ENSG00000116604|ENST00000348159|MEF2D	MULTI-MSMS	A375_MHC_IP_R2	2	649.72998046875	2	649.330402	1296.64625	-0.75247	-0.0004886	-0.34208	-0.00022212	-1.0945	-0.00071072	649.330177664829	70.693	1.5706	71.427	71.099	72.669	0.73421					83	30	5	0	0	0	0.080535	1	26964	26964		67.838	18.284	1	211780000			9290	3410	6588	6641	9077	9077					0.009792830751621295
EELDGLFRRY	10	Unmodified	_EELDGLFRRY_					0	0	0		ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D	ENSG00000116604|ENST00000348159|MEF2D	ENSG00000116604|ENST00000348159|MEF2D	MSMS	A375_MHC_IP_R2	2	433.1626281738281	3	433.222693	1296.64625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.48	1	73.215	72.715	73.715	0.73541								0	0	0	0.13403	1	27505	27505		22.775	9.2563	1				9291	3410	6588	6641	9078	9078					0.009792830751621295
EELDIIYKV	9	Unmodified	_EELDIIYKV_					0	0	0		ENST00000469673.1_1_22:31822577-31829954:+|nuORF;ENSG00000185721|ENST00000331457|DRG1	ENST00000469673.1_1_22:31822577-31829954:+|nuORF	ENST00000469673.1_1_22:31822577-31829954:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	560.6441040039062	2	561.308072	1120.60159	-0.512	-0.00028739	-0.10183	-5.7159E-05	-0.61383	-0.00034455	561.3081057901674	90.029	0.66519	90.761	90.391	91.056	0.7318					17	12	2	0	0	0	0.29123	1	34245	34245		31.268	17.362	1	1968400			9292	8686	6589	6642	9079	9079					0.046114592090816586
EELDIIYKV	9	Unmodified	_EELDIIYKV_					0	0	0		ENST00000469673.1_1_22:31822577-31829954:+|nuORF;ENSG00000185721|ENST00000331457|DRG1	ENST00000469673.1_1_22:31822577-31829954:+|nuORF	ENST00000469673.1_1_22:31822577-31829954:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	561.308072	1120.60159	-0.70728	-0.000397	0.40776	0.00022888	-0.29952	-0.00016812	561.3082950145144	90.699	0.8126	90.699	90.336	91.148	0	-0.03134	0.00029663	NaN	31.268	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1884700			9293	8686	6589	6642							0.046114592090816586
EELDKELLW	9	Unmodified	_EELDKELLW_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-SECPEP	A375_MHC_IP_R2	2	587.7275390625	2	587.803154	1173.59175	-0.57245	-0.00033649	0.30562	0.00017965	-0.26683	-0.00015684	588.3048008924741	98.21	0.45861	98.97	98.742	99.201	0.75977					11	8	2	0	0	0	0.38578	1	37261	37261		41.84	3.8656	1	908980			9294	1468	6590	6643	9080	9080					0.011902712037226593
EELDKELLW	9	Unmodified	_EELDKELLW_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-MATCH	A375_MHC_IP_R1	1		2	587.803154	1173.59175	-0.27711	-0.00016288	-0.29267	-0.00017203	-0.56978	-0.00033492	587.8029256254913	99.042	0.4057	99.042	98.762	99.168	0	0.035981	-0.00029671	NaN	41.84	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1309500			9295	1468	6590	6643							0.011902712037226593
EELDLNKAL	9	Unmodified	_EELDLNKAL_					0	0	0		nc|ENSG00000062650|Q7Z5K2-2|WAPL;ENSG00000062650|ENST00000298767|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1813354492188	2	522.782222	1043.54989	-0.68587	-0.00035856	-0.44544	-0.00023287	-1.1313	-0.00059143	522.7813511457714	66.383	0.76324	66.383	66.072	66.836	0					27	14	3	0	0	0	0.056023	1	24029	24029		66.457	12.624	1	4736200			9296	14469	6591	6644	9081	9081					0.02985715515183074
EELDLNKAL	9	Unmodified	_EELDLNKAL_					0	0	0		nc|ENSG00000062650|Q7Z5K2-2|WAPL;ENSG00000062650|ENST00000298767|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1799926757812	2	522.782222	1043.54989	-0.73566	-0.00038459	-1.5841	-0.00082811	-2.3197	-0.0012127	522.7810778748787	65.617	1.0706	66.355	66.018	67.089	0.73811					37	20	3	0	0	0	0.10103	1	24845	24845		71.922	13.243	1	5833200			9297	14469	6591	6644	9082	9082					0.02985715515183074
EELDMMKYA	9	Unmodified	_EELDMMKYA_					0	0	0			REV__nc|ENSG00000170242|Q96K76-2|USP47	REV__nc|ENSG00000170242|Q96K76-2|USP47	MULTI-MSMS	A375_MHC_IP_R2	2	565.2034912109375	2	565.248843	1128.48313	-0.67565	-0.00038191	0.43267	0.00024457	-0.24298	-0.00013734	565.2489949768996	49.187	0.60737	49.944	49.69	50.297	0.75737					28	11	3	0	0	0	0.63811	1	18547	18547		12.532	0	1	5203900	+		9298	20976	6592	6645	9083	9083					-0.07596979362551792
EELDNNDDDD	10	Unmodified	_EELDNNDDDD_					0	0	0			REV__nc|ENSG00000077097|Q02880-2|TOP2B	REV__nc|ENSG00000077097|Q02880-2|TOP2B	MSMS	A375_MHC_IP_R1	1	597.2080688476562	2	597.207469	1192.40038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.366	1	87.366	86.866	87.866	0								0	0	0	0.15451	1	32055	32055		6.2058	0.44535	1		+		9299	16688	6593	6646	9084	9084					-0.18811926356033837
EELDNWQPA	9	Unmodified	_EELDNWQPA_					0	0	0		nc|ENSG00000249481|Q496A3-2|SPATS1;ENSG00000249481|ENST00000674044|SPATS1	nc|ENSG00000249481|Q496A3-2|SPATS1	nc|ENSG00000249481|Q496A3-2|SPATS1	MULTI-MSMS	A375_MHC_IP_R1	1	551.6461181640625	2	551.246003	1100.47745	-0.15116	-8.3325E-05	-0.33796	-0.0001863	-0.48912	-0.00026963	551.2457629481079	45.241	1.3669	45.241	44.928	46.295	0					40	26	2	0	0	0	0.13797	1	15774	15774		43.858	2.0187	1	29261000			9300	9838	6594	6647	9085	9085					-0.0687661855836268
EELDPESREY	10	Unmodified	_EELDPESREY_					0	0	0		ENSG00000183617|ENST00000330133|MRPL54	ENSG00000183617|ENST00000330133|MRPL54	ENSG00000183617|ENST00000330133|MRPL54	MULTI-MSMS	A375_MHC_IP_R1	1	634.1775512695312	2	633.777864	1265.54118	-0.67423	-0.00042731	0.41658	0.00026402	-0.25765	-0.0001633	633.7780111110275	37.122	0.45608	37.122	36.895	37.351	0					12	8	2	0	0	0	0.13881	1	12522	12522		55.503	24.866	1	3089400			9301	8510	6595	6648	9086	9086					-0.08097302911937732
EELDPESREY	10	Unmodified	_EELDPESREY_					0	0	0		ENSG00000183617|ENST00000330133|MRPL54	ENSG00000183617|ENST00000330133|MRPL54	ENSG00000183617|ENST00000330133|MRPL54	MULTI-MSMS	A375_MHC_IP_R2	2	634.1771850585938	2	633.777864	1265.54118	-1.0573	-0.00067012	0.20807	0.00013187	-0.84927	-0.00053825	633.7779664455506	36.461	0.40519	37.232	37.005	37.41	0.7709					13	7	2	0	0	0	0.0090409	1	13307	13307		93.166	62.529	1	3461000			9302	8510	6595	6648	9087	9087					-0.08097302911937732
EELDPESREYW	11	Unmodified	_EELDPESREYW_					0	0	0		ENSG00000183617|ENST00000330133|MRPL54	ENSG00000183617|ENST00000330133|MRPL54	ENSG00000183617|ENST00000330133|MRPL54	MULTI-MSMS	A375_MHC_IP_R1	1	727.7190551757812	2	726.817521	1451.62049	-0.20414	-0.00014838	0.045877	3.3344E-05	-0.15827	-0.00011503	726.8174571340834	69.881	0.76009	69.881	69.529	70.289	0					38	14	4	0	0	0	0.10313	1	25346	25346		69.338	57.098	1	10656000			9303	8510	6596	6649	9088	9088					-0.08725655957800882
EELDPESREYW	11	Unmodified	_EELDPESREYW_					0	0	0		ENSG00000183617|ENST00000330133|MRPL54	ENSG00000183617|ENST00000330133|MRPL54	ENSG00000183617|ENST00000330133|MRPL54	MULTI-SECPEP	A375_MHC_IP_R2	2	727.2162475585938	2	726.817521	1451.62049	-0.70277	-0.00051079	-0.13223	-9.6109E-05	-0.83501	-0.0006069	726.8172607123352	69.42	0.60893	70.154	69.879	70.488	0.73421					31	11	4	0	0	0	0.039631	1	26259	26259		104.48	78.216	1	6773100			9304	8510	6596	6649	9089	9089					-0.08725655957800882
EELDRQYF	8	Unmodified	_EELDRQYF_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-MSMS	A375_MHC_IP_R1	1	550.6561279296875	2	550.256371	1098.49819	-0.10593	-5.829E-05	0.31354	0.00017253	0.20761	0.00011424	550.256530640866	69.707	0.40393	69.707	69.529	69.933	0					13	7	2	0	0	0	0.7256	1	25326	25326		26.884	0	1	1805700	+		9305	21862	6597	6650	9090	9090					-0.0471202817871017
EELDRRLGTIF	11	Unmodified	_EELDRRLGTIF_					0	0	0		DNAH9|p.D521E|1|0.31|ENSG00000007174|chr17:11632631-11632631|T/A|missense_variant	DNAH9|p.D521E|1|0.31|ENSG00000007174|chr17:11632631-11632631|T/A|missense_variant	DNAH9|p.D521E|1|0.31|ENSG00000007174|chr17:11632631-11632631|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	450.64520263671875	3	450.245498	1347.71466	-0.62961	-0.00028348	-0.22835	-0.00010282	-0.85796	-0.00038629	450.24538252718156	21.482	0.60971	22.101	21.777	22.387	0.61932					35	11	4	0	0	0	0.73195	1	6719	6719		7.0371	1.1689	1	10456000			9306	774	6598	6651	9091	9091					0.05471527655004138
EELDRYFVAR	10	Unmodified	_EELDRYFVAR_					0	0	0			REV__ANKRD36C|p.L1401*|1|0.24|ENSG00000174501|chr2:95856059-95856059|A/-|frameshift_variant	REV__ANKRD36C|p.L1401*|1|0.24|ENSG00000174501|chr2:95856059-95856059|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	433.1632385253906	3	433.222693	1296.64625	0.0089717	3.8867E-06	-0.46504	-0.00020147	-0.45607	-0.00019758	433.22257468266514	71.414	3.0422	71.414	70.648	73.69	0					174	59	6	0	0	0	0.66308	1	26738	26738		10.315	0	1	556900000	+		9307	15411	6599	6652	9092	9092					0.009792830751393922
EELDRYFVAR	10	Unmodified	_EELDRYFVAR_					0	0	0			REV__ANKRD36C|p.L1401*|1|0.24|ENSG00000174501|chr2:95856059-95856059|A/-|frameshift_variant	REV__ANKRD36C|p.L1401*|1|0.24|ENSG00000174501|chr2:95856059-95856059|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	433.6221008300781	3	433.222693	1296.64625	-0.29463	-0.00012764	-0.46983	-0.00020354	-0.76446	-0.00033118	433.2225637067104	70.693	2.4814	71.427	71.099	73.58	0.73421					160	48	6	0	0	0	0.50967	1	27280	27280		18.721	0	1	851400000	+		9308	15411	6599	6652	9093	9093					0.009792830751393922
EELDSLKYSDL	11	Unmodified	_EELDSLKYSDL_					0	0	0		nc|ENSG00000137804|Q9BXS6-7|NUSAP1;nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1	nc|ENSG00000137804|Q9BXS6-7|NUSAP1	nc|ENSG00000137804|Q9BXS6-7|NUSAP1	MULTI-MSMS	A375_MHC_IP_R1	1	438.616943359375	3	437.882002	1310.62418	0.042512	1.8615E-05	1.7014	0.00074502	1.7439	0.00076364	437.8822214560579	71.409	1.0614	71.409	71.108	72.169	0					60	20	5	0	0	0	0.36212	1	25908	25908		28.181	5.1656	1	26599000			9309	4915	6600	6653	9094	9094					-0.01870986183939749
EELDSLKYSDL	11	Unmodified	_EELDSLKYSDL_					0	0	0		nc|ENSG00000137804|Q9BXS6-7|NUSAP1;nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1	nc|ENSG00000137804|Q9BXS6-7|NUSAP1	nc|ENSG00000137804|Q9BXS6-7|NUSAP1	MULTI-MSMS	A375_MHC_IP_R1	1	656.7198486328125	2	656.319365	1310.62418	-0.27993	-0.00018372	0.85866	0.00056355	0.57873	0.00037983	656.3197368533968	71.405	0.60803	71.405	71.057	71.665	0					27	11	3	0	0	0	0.53345	1	25925	25925		28.495	6.9575	1	10457000			9310	4915	6600	6653	9095	9095					-0.01870986183939749
EELDSLKYSDL	11	Unmodified	_EELDSLKYSDL_					0	0	0		nc|ENSG00000137804|Q9BXS6-7|NUSAP1;nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1	nc|ENSG00000137804|Q9BXS6-7|NUSAP1	nc|ENSG00000137804|Q9BXS6-7|NUSAP1	MULTI-MSMS	A375_MHC_IP_R2	2	438.6165771484375	3	437.882002	1310.62418	-0.34422	-0.00015073	1.8028	0.00078939	1.4585	0.00063867	437.8822315513881	70.696	0.81032	71.431	71.149	71.959	0.73421					54	15	6	0	0	0	0.45155	1	26786	26786		23.016	4.6759	1	36549000			9311	4915	6600	6653	9096	9096					-0.01870986183939749
EELDSLKYSDL	11	Unmodified	_EELDSLKYSDL_					0	0	0		nc|ENSG00000137804|Q9BXS6-7|NUSAP1;nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1	nc|ENSG00000137804|Q9BXS6-7|NUSAP1	nc|ENSG00000137804|Q9BXS6-7|NUSAP1	MULTI-MSMS	A375_MHC_IP_R2	2	656.7196655273438	2	656.319365	1310.62418	-0.92727	-0.00060858	1.4167	0.00092982	0.48945	0.00032123	656.3198897426358	70.779	0.55609	71.513	71.2	71.756	0.73421					28	10	4	0	0	0	0.17486	1	26807	26807		57.249	24.463	1	11760000			9312	4915	6600	6653	9097	9097					-0.01870986183939749
EELEACKSI	9	Unmodified	_EELEACKSI_					0	0	0			REV__ENST00000561242.1_1_15:63353867-63354482:+|nuORF	REV__ENST00000561242.1_1_15:63353867-63354482:+|nuORF	MSMS	A375_MHC_IP_R1	1	511.207763671875	2	511.247157	1020.47976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.807	1	47.807	47.307	48.307	0								0	0	0	0.15283	1	16832	16832		16.942	0	1		+		9313	26136	6601	6654	9098	9098					-0.029659061449365254
EELEAIKLI	9	Unmodified	_EELEAIKLI_					0	0	0		nc|ENSG00000120669|Q9NX45-2|SOHLH2;ENSG00000120669|ENST00000379881|SOHLH2;nc|ENSG00000120669|Q9NX45-3|SOHLH2	nc|ENSG00000120669|Q9NX45-2|SOHLH2	nc|ENSG00000120669|Q9NX45-2|SOHLH2	MULTI-SECPEP	A375_MHC_IP_R2	2	529.7103881835938	2	529.310615	1056.60668	-0.582	-0.00030806	0.58846	0.00031148	0.0064601	3.4194E-06	529.310533427843	96.295	0.66045	97.045	96.602	97.262	0.75045					24	12	3	0	0	0	0.16764	1	36549	36549		60.074	18.234	1	2868500			9314	3674	6602	6655	9099	9099					0.08063763071709218
EELEEDEDEF	10	Unmodified	_EELEEDEDEF_					0	0	0			REV__nc|ENSG00000156374|Q9BYE7-3|PCGF6	REV__nc|ENSG00000156374|Q9BYE7-3|PCGF6	MSMS	A375_MHC_IP_R1	1	642.241455078125	2	642.24352	1282.47249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.72	1	107.72	107.22	108.22	0								0	0	0	0.15308	1	39523	39523		10.824	6.0679	1		+		9315	19977	6603	6656	9100	9100					-0.15745012002321346
EELEEDEDEF	10	Unmodified	_EELEEDEDEF_					0	0	0			REV__nc|ENSG00000156374|Q9BYE7-3|PCGF6	REV__nc|ENSG00000156374|Q9BYE7-3|PCGF6	MSMS	A375_MHC_IP_R1	1	642.2418212890625	2	642.24352	1282.47249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.8	1	107.8	107.3	108.3	0								0	0	0	0.15308	1	39553	39553		10.824	6.8795	1		+		9316	19977	6603	6656	9101	9101					-0.15745012002321346
EELEEDEDEF	10	Unmodified	_EELEEDEDEF_					0	0	0			REV__nc|ENSG00000156374|Q9BYE7-3|PCGF6	REV__nc|ENSG00000156374|Q9BYE7-3|PCGF6	MSMS	A375_MHC_IP_R1	1	642.2825927734375	2	642.24352	1282.47249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.36	1	132.36	131.86	132.86	0								0	0	0	0.15591	1	51037	51037		1.6526	0	1		+		9317	19977	6603	6656	9102	9102					-0.15745012002321346
EELEEDEDEF	10	Unmodified	_EELEEDEDEF_					0	0	0			REV__nc|ENSG00000156374|Q9BYE7-3|PCGF6	REV__nc|ENSG00000156374|Q9BYE7-3|PCGF6	MSMS	A375_MHC_IP_R2	2	642.2821655273438	2	642.24352	1282.47249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.04	1	132.23	131.73	132.73	0.18953								0	0	0	0.15591	1	51941	51941		1.6526	0	1		+		9318	19977	6603	6656	9103	9103					-0.15745012002321346
EELEEDEDEF	10	Unmodified	_EELEEDEDEF_					0	0	0			REV__nc|ENSG00000156374|Q9BYE7-3|PCGF6	REV__nc|ENSG00000156374|Q9BYE7-3|PCGF6	MSMS	A375_MHC_IP_R2	2	642.2819213867188	2	642.24352	1282.47249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.98	1	133.15	132.65	133.65	0.16487								0	0	0	0.15591	1	52317	52317		1.6526	0	1		+		9319	19977	6603	6656	9104	9104					-0.15745012002321346
EELEGEEAL	9	Unmodified	_EELEGEEAL_					0	0	0		nc|ENSG00000183260|Q9H3Z7|ABHD16B	nc|ENSG00000183260|Q9H3Z7|ABHD16B	nc|ENSG00000183260|Q9H3Z7|ABHD16B	MSMS	A375_MHC_IP_R2	2	509.72509765625	2	509.732394	1017.45024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.22	1	117.88	117.38	118.38	0.65962								0	0	0	0.14677	1	44341	44341		26.884	0	1				9320	14807	6604	6657	9105	9105					-0.05779146889403819
EELEGQIKKL	10	Unmodified	_EELEGQIKKL_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-MSMS	A375_MHC_IP_R1	1	396.6274719238281	3	396.227444	1185.6605	0.022712	8.999E-06	0.28058	0.00011117	0.30329	0.00012017	396.22751436326524	38.602	0.5596	38.602	38.423	38.983	0					22	10	3	0	0	0	0.14129	1	13123	13123		55.249	16.036	1	9737600			9321	2362	6605	6658	9106	9106					0.07509935503435372
EELEGQIKKL	10	Unmodified	_EELEGQIKKL_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-MSMS	A375_MHC_IP_R2	2	396.6272277832031	3	396.227444	1185.6605	-0.29267	-0.00011596	-0.066449	-2.6329E-05	-0.35912	-0.00014229	396.22738715853114	37.837	0.4614	38.612	38.382	38.843	0.77451					22	8	4	0	0	0	0.42123	1	13891	13891		32.898	4.6641	1	10152000			9322	2362	6605	6658	9107	9107					0.07509935503435372
EELEGQIKKL	10	Unmodified	_EELEGQIKKL_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-SECPEP	A375_MHC_IP_R2	2	594.23681640625	2	593.837528	1185.6605	-0.72926	-0.00043306	-0.054212	-3.2193E-05	-0.78347	-0.00046526	593.8375418568237	37.836	0.30689	38.611	38.432	38.739	0.77451					9	5	2	0	0	0	0.92351	1	13920	13920		13.615	2.1202	1	3107500			9323	2362	6605	6658	9108	9108					0.07509935503435372
EELEITVNVP	10	Unmodified	_EELEITVNVP_					0	0	0		nc|ENSG00000145734|A6H8Y1-7|BDP1;nc|ENSG00000145734|A6H8Y1-6|BDP1;ENSG00000145734|ENST00000358731|BDP1;nc|ENSG00000145734|A6H8Y1-2|BDP1;ENST00000508917.6_1_5:70751704-70841064:+|nuORF;nc|ENSG00000145734|A6H8Y1-8|BDP1	nc|ENSG00000145734|A6H8Y1-7|BDP1	nc|ENSG00000145734|A6H8Y1-7|BDP1	MULTI-SECPEP	A375_MHC_IP_R1	1	571.6614379882812	2	571.800611	1141.58667	-0.16524	-9.4487E-05	0.20448	0.00011692	0.039233	2.2434E-05	571.8005946782605	62.797	0.61492	62.797	62.454	63.069	0					18	11	2	0	0	0	0.61429	1	22713	22713		30.637	0	1	1800000			9324	5576	6606	6659	9109	9109					0.02153967341087082
EELEITVNVP	10	Unmodified	_EELEITVNVP_					0	0	0		nc|ENSG00000145734|A6H8Y1-7|BDP1;nc|ENSG00000145734|A6H8Y1-6|BDP1;ENSG00000145734|ENST00000358731|BDP1;nc|ENSG00000145734|A6H8Y1-2|BDP1;ENST00000508917.6_1_5:70751704-70841064:+|nuORF;nc|ENSG00000145734|A6H8Y1-8|BDP1	nc|ENSG00000145734|A6H8Y1-7|BDP1	nc|ENSG00000145734|A6H8Y1-7|BDP1	MULTI-SECPEP	A375_MHC_IP_R2	2	571.6611328125	2	571.800611	1141.58667	-0.51513	-0.00029455	-0.026798	-1.5323E-05	-0.54193	-0.00030987	572.301889896285	62.061	0.50539	62.804	62.471	62.976	0.74263					17	9	3	0	0	0	0.72086	1	23568	23568		30.637	19.813	1	1526000			9325	5576	6606	6659	9110	9110					0.02153967341087082
EELEKLQQY	9	Unmodified	_EELEKLQQY_					0	0	0		nc|ENSG00000088325|Q9ULW0-2|TPX2;ENSG00000088325|ENST00000300403|TPX2	nc|ENSG00000088325|Q9ULW0-2|TPX2	nc|ENSG00000088325|Q9ULW0-2|TPX2	MULTI-MSMS	A375_MHC_IP_R1	1	590.2135009765625	2	590.298236	1178.58192	0.13858	8.1804E-05	-0.33474	-0.0001976	-0.19616	-0.00011579	590.2979757255649	45.123	0.7585	45.123	44.878	45.636	0					28	14	3	0	0	0	0.001114	1	15752	15752		152.89	63.485	1	8024300			9326	1889	6607	6660	9111	9111					-0.00022916801663086517
EELEKLQQY	9	Unmodified	_EELEKLQQY_					0	0	0		nc|ENSG00000088325|Q9ULW0-2|TPX2;ENSG00000088325|ENST00000300403|TPX2	nc|ENSG00000088325|Q9ULW0-2|TPX2	nc|ENSG00000088325|Q9ULW0-2|TPX2	MULTI-SECPEP	A375_MHC_IP_R2	2	590.69775390625	2	590.298236	1178.58192	-0.58811	-0.00034716	0.10049	5.932E-05	-0.48762	-0.00028784	590.2982589455991	44.465	0.81449	45.234	44.883	45.698	0.7691					36	15	4	0	0	0	0.011066	1	16572	16572		125.53	100.13	1	7314000			9327	1889	6607	6660	9112	9112					-0.00022916801663086517
EELEKTFTF	9	Unmodified	_EELEKTFTF_					0	0	0		ENSG00000110719|ENST00000265686|TCIRG1;ENST00000533947.1_1_11:67808738-67810499:+|nuORF	ENSG00000110719|ENST00000265686|TCIRG1	ENSG00000110719|ENST00000265686|TCIRG1	MULTI-SECPEP	A375_MHC_IP_R2	2	572.681640625	2	572.282054	1142.54956	-0.2613	-0.00014954	3.0749	0.0017597	2.8136	0.0016102	572.2827886031401	77.796	1.1694	78.539	78.216	79.385	0.74293					44	22	3	0	0	0	0.061442	1	29529	29529		82.529	0	1	5427500			9328	2944	6608	6661	9113	9113					-0.016017042046541974
EELELESEE	9	Unmodified	_EELELESEE_					0	0	0		ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant;ANK2|p.D3531Ffs*6|1|0.05|ENSG00000145362|chr4:113359207-113359208|-/ATTCTAT|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2	ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant	ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	553.1581420898438	2	553.740416	1105.46628	-0.72538	-0.00040167	1.0093	0.00055889	0.28391	0.00015722	553.7403988953388	46.022	0.20193	46.787	46.654	46.855	0.76519					5	3	2	0	0	0	0.55359	1	17171	17171		21.747	5.8995	1	808950			9329	132	6609	6662	9114	9114					-0.08223485443181744
EELELLNTIN	10	Unmodified	_EELELLNTIN_					0	0	0		ENSG00000139223|ENST00000266594|ANP32D	ENSG00000139223|ENST00000266594|ANP32D	ENSG00000139223|ENST00000266594|ANP32D	MULTI-MSMS	A375_MHC_IP_R1	1	594.23779296875	2	594.311343	1186.60813	0.026836	1.5949E-05	0.30999	0.00018423	0.33682	0.00020018	594.3115704896444	38.857	0.45628	38.857	38.577	39.033	0					12	8	3	0	0	0	0.45919	1	13143	13143		30.637	5.2372	1	3461900			9330	5062	6610	6663	9115	9115					0.022293523698408535
EELENDDDDD	10	Unmodified	_EELENDDDDD_					0	0	0		nc|ENSG00000162623|Q6IPR3-2|TYW3;ENSG00000162623|ENST00000370867|TYW3	nc|ENSG00000162623|Q6IPR3-2|TYW3	nc|ENSG00000162623|Q6IPR3-2|TYW3	MSMS	A375_MHC_IP_R1	1	604.6846313476562	2	604.707302	1207.40005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.131	1	70.131	69.631	70.631	0								0	0	0	0.15308	1	25458	25458		10.824	4.6181	1				9331	6566	6611	6664	9116	9116					-0.1953534607587244
EELEQKYTY	9	Unmodified	_EELEQKYTY_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	A375_MHC_IP_R1	1	602.1825561523438	2	601.782418	1201.55028	-0.57525	-0.00034618	0.69572	0.00041867	0.12047	7.2496E-05	601.7828495763687	38.397	0.51083	38.397	38.168	38.679	0					21	9	3	0	0	0	0.005606	1	13024	13024		189.73	103.4	1	13299000			9332	3306	6612	6665	9117	9117					-0.0424290955561446
EELEQKYTY	9	Unmodified	_EELEQKYTY_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	A375_MHC_IP_R2	2	602.1823120117188	2	601.782418	1201.55028	-0.65796	-0.00039595	-0.10256	-6.1717E-05	-0.76051	-0.00045766	601.7823517664797	37.786	0.46091	38.561	38.33	38.791	0.77451					24	8	4	0	0	0	0.005606	1	13834	13834		189.73	93.365	1	15089000			9333	3306	6612	6665	9118	9118					-0.0424290955561446
EELERDKRVTW	11	Unmodified	_EELERDKRVTW_					0	0	0		ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2	ENSG00000213593|ENST00000278422|TMX2	ENSG00000213593|ENST00000278422|TMX2	MULTI-MSMS	A375_MHC_IP_R1	1	487.9876708984375	3	487.587924	1459.74194	-0.6239	-0.0003042	0.014985	7.3065E-06	-0.60891	-0.0002969	487.5879010125035	29.854	0.54335	29.854	29.657	30.2	0					26	10	3	0	0	0	0.037721	3	9384	9384;9467;9514		81.642	60.401	1	25495000			9334	9573	6613	6666	9119;9120;9121	9119					0.03046011195351639
EELERDKRVTW	11	Unmodified	_EELERDKRVTW_					0	0	0		ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2	ENSG00000213593|ENST00000278422|TMX2	ENSG00000213593|ENST00000278422|TMX2	MULTI-MSMS	A375_MHC_IP_R2	2	487.9873352050781	3	487.587924	1459.74194	-1.4548	-0.00070932	0.51014	0.00024874	-0.94462	-0.00046059	487.5880654824427	29.165	0.70154	29.864	29.584	30.286	0.69872					42	13	4	0	0	0	0.023657	3	10160	10160;10185;10231		85.417	71.247	1	42101000			9335	9573	6613	6666	9122;9123;9124	9122					0.03046011195351639
EELERGIRSW	10	Unmodified	_EELERGIRSW_					0	0	0		ENSG00000130479|ENST00000324096|MAP1S;ENST00000601544.5_1_19:17830311-17836711:+|nuORF	ENSG00000130479|ENST00000324096|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	MULTI-MSMS	A375_MHC_IP_R1	1	425.954345703125	3	425.554443	1273.6415	-0.097267	-4.1392E-05	-0.06318	-2.6887E-05	-0.16045	-6.8279E-05	425.5543701210163	43.985	0.56078	43.985	43.706	44.267	0					25	10	4	0	0	0	0.51635	1	15372	15372		27.129	1.1081	1	3438000			9336	4246	6614	6667	9125	9125					0.015623989323785281
EELERGIRSW	10	Unmodified	_EELERGIRSW_					0	0	0		ENSG00000130479|ENST00000324096|MAP1S;ENST00000601544.5_1_19:17830311-17836711:+|nuORF	ENSG00000130479|ENST00000324096|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	MULTI-MSMS	A375_MHC_IP_R2	2	425.9543762207031	3	425.554443	1273.6415	-0.043149	-1.8362E-05	-0.31591	-0.00013444	-0.35906	-0.0001528	425.55433899604014	43.208	0.45629	43.98	43.775	44.231	0.7724					20	8	3	0	0	0	0.40573	1	16108	16108		33.821	7.824	1	5479000			9337	4246	6614	6667	9126	9126					0.015623989323785281
EELERILVY	9	Unmodified	_EELERILVY_					0	0	0		ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	MULTI-SECPEP	A375_MHC_IP_R1	1	582.7188720703125	2	582.318971	1162.62339	-0.10448	-6.0842E-05	-0.60246	-0.00035083	-0.70695	-0.00041167	582.3186607122127	88.65	0.45913	88.65	88.46	88.919	0					12	8	2	0	0	0	0.24324	1	32593	32593		53.833	19.431	1	2178200			9338	8659	6615	6668	9127	9127					0.04858263957657982
EELERILVY	9	Unmodified	_EELERILVY_					0	0	0		ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	MULTI-MSMS	A375_MHC_IP_R2	2	582.3944702148438	2	582.318971	1162.62339	-0.30441	-0.00017727	-0.64682	-0.00037666	-0.95124	-0.00055392	582.318472279264	87.914	0.45709	88.646	88.418	88.875	0.7318					16	8	3	0	0	0	0.073067	2	33425	33425;33435		55.503	20.571	1	3144000			9339	8659	6615	6668	9128;9129	9128					0.04858263957657982
EELESENAPV	10	Unmodified	_EELESENAPV_					0	0	0		nc|ENSG00000143258|Q9UK80-3|USP21;ENSG00000143258|ENST00000368002|USP21;ENST00000485277.1_1_1:161133669-161135234:+|nuORF;ENST00000487163.5_1_1:161133902-161134067:+|nuORF	nc|ENSG00000143258|Q9UK80-3|USP21	nc|ENSG00000143258|Q9UK80-3|USP21	MULTI-SECPEP	A375_MHC_IP_R2	2	558.24462890625	2	558.756401	1115.49825	-1.0545	-0.00058922	-3.2045	-0.0017905	-4.259	-0.0023798	558.7565276543924	59.999	0.30221	60.746	60.501	60.804	0.74714					8	5	2	0	0	0	0.83086	1	22625	22625		6.7232	0	1	781400			9340	5363	6616	6669	9130	9130					-0.05488072969365021
EELESITDFE	10	Unmodified	_EELESITDFE_					0	0	0			REV__nc|ENSG00000204116|Q5VXU3-2|CHIC1	REV__nc|ENSG00000204116|Q5VXU3-2|CHIC1	MSMS	A375_MHC_IP_R1	1	606.22705078125	2	606.269341	1210.52413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.091	1	84.091	83.591	84.591	0								0	0	0	0.14862	1	30791	30791		20.454	0	1		+		9341	22486	6617	6670	9131	9131					-0.07271223517750514
EELESITDFE	10	Unmodified	_EELESITDFE_					0	0	0			REV__nc|ENSG00000204116|Q5VXU3-2|CHIC1	REV__nc|ENSG00000204116|Q5VXU3-2|CHIC1	MULTI-SECPEP	A375_MHC_IP_R1	1	605.6856689453125	2	606.269341	1210.52413	-0.2179	-0.0001321	0.61927	0.00037544	0.40137	0.00024334	606.2695096513881	62.644	0.76899	62.644	62.3	63.069	0					21	14	3	0	0	0	0.91556	1	22780	22780		14.838	2.3067	1	1659100	+		9342	22486	6617	6670	9132	9132					-0.07271223517750514
EELESITDFE	10	Unmodified	_EELESITDFE_					0	0	0			REV__nc|ENSG00000204116|Q5VXU3-2|CHIC1	REV__nc|ENSG00000204116|Q5VXU3-2|CHIC1	MULTI-MSMS	A375_MHC_IP_R2	2	606.1869506835938	2	606.269341	1210.52413	-0.379	-0.00022977	1.3072	0.00079249	0.92816	0.00056272	606.2692009784498	62.924	0.75751	63.667	63.333	64.091	0.74263					17	14	2	0	0	0	0.6806	1	23927	23927		14.838	0	1	1114300	+		9343	22486	6617	6670	9133	9133					-0.07271223517750514
EELESSIAFGE	11	Unmodified	_EELESSIAFGE_					0	0	0			REV__BOD1L1|p.S1822L|1|0.42|ENSG00000038219|chr4:13601435-13601435|G/A|missense_variant	REV__BOD1L1|p.S1822L|1|0.42|ENSG00000038219|chr4:13601435-13601435|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	605.6968383789062	2	605.777333	1209.54011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.037	1	70.037	69.537	70.537	0								0	0	0	0.16108	1	25424	25424		13.042	0.80181	1		+		9344	15520	6618	6671	9134	9134					-0.056275172808454954
EELEVDETSI	10	Unmodified	_EELEVDETSI_					0	0	0			REV__ENSG00000112200|ENST00000370706|ZNF451	REV__ENSG00000112200|ENST00000370706|ZNF451	MSMS	A375_MHC_IP_R1	1	582.1982421875	2	582.269341	1162.52413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.943	1	63.943	63.443	64.443	0								0	0	0	0.14601	1	23127	23127		25.399	0.40835	1		+		9345	17716	6619	6672	9135	9135					-0.050632235177545226
EELEVDFKKL	10	Unmodified	_EELEVDFKKL_					0	0	0		ENSG00000019995|ENST00000359653|ZRANB1	ENSG00000019995|ENST00000359653|ZRANB1	ENSG00000019995|ENST00000359653|ZRANB1	MULTI-SECPEP	A375_MHC_IP_R2	2	625.7376708984375	2	625.337361	1248.66017	-0.73661	-0.00046063	0.14485	9.0583E-05	-0.59175	-0.00037005	625.3376760481276	67.699	0.40653	68.435	68.256	68.663	0.73631					12	7	2	0	0	0	0.40453	1	25688	25688		75.571	31.589	1	2001500			9346	1055	6620	6673	9136	9136					0.04578515783578041
EELEVDFKKL	10	Unmodified	_EELEVDFKKL_					0	0	0		ENSG00000019995|ENST00000359653|ZRANB1	ENSG00000019995|ENST00000359653|ZRANB1	ENSG00000019995|ENST00000359653|ZRANB1	MULTI-MATCH	A375_MHC_IP_R1	1		2	625.337361	1248.66017	-0.72349	-0.00045242	0.32573	0.00020369	-0.39776	-0.00024874	625.33779374526	68.459	0.40688	68.459	68.31	68.717	0	0.012054	0.00014033	NaN	75.571	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1389100			9347	1055	6620	6673							0.04578515783578041
EELEWSGQP	9	Unmodified	_EELEWSGQP_					0	0	0			REV__ENST00000519149.1_1_5:169714972-169724783:-|nuORF	REV__ENST00000519149.1_1_5:169714972-169724783:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	538.1399536132812	2	537.740554	1073.46655	-1.2431	-0.00066847	-0.1574	-8.4643E-05	-1.4005	-0.00075312	537.7403700892272	59.676	0.55592	60.423	60.148	60.704	0.74714					22	10	3	0	0	0	0.46045	1	22575	22575		36.127	5.4905	1	3099200	+		9348	25681	6621	6674	9137	9137					-0.06724020932642816
EELEWSGQP	9	Unmodified	_EELEWSGQP_					0	0	0			REV__ENST00000519149.1_1_5:169714972-169724783:-|nuORF	REV__ENST00000519149.1_1_5:169714972-169724783:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	537.740554	1073.46655	-0.68286	-0.0003672	-0.82176	-0.00044189	-1.5046	-0.0008091	537.7400776931761	60.312	0.61185	60.312	60.006	60.618	0	-0.055679	-0.00047809	NaN	36.127	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3018100	+		9349	25681	6621	6674							-0.06724020932642816
EELFARKF	8	Unmodified	_EELFARKF_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	A375_MHC_IP_R1	1	520.6589965820312	2	520.282192	1038.54983	-0.18939	-9.8538E-05	-0.02272	-1.1821E-05	-0.21211	-0.00011036	520.2819575941081	48.244	0.45588	48.244	48.02	48.476	0					16	8	3	0	0	0	0.9187	1	17050	17050		19.257	11.968	1	4304900			9350	5230	6622	6675	9138	9138					0.03209760305844611
EELFARKF	8	Unmodified	_EELFARKF_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MATCH	A375_MHC_IP_R2	2		2	520.282192	1038.54983	-0.4789	-0.00024917	0.11268	5.8624E-05	-0.36623	-0.00019054	520.2821871651714	47.356	0.35677	48.117	47.919	48.275	0.76128	-0.063042	3.8631E-05	NaN	13.906	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3527900			9351	5230	6622	6675							0.03209760305844611
EELFASIAT	9	Unmodified	_EELFASIAT_					0	0	0		nc|ENSG00000132405|Q9P2M4-2|TBC1D14;ENSG00000132405|ENST00000409757|TBC1D14	nc|ENSG00000132405|Q9P2M4-2|TBC1D14	nc|ENSG00000132405|Q9P2M4-2|TBC1D14	MULTI-SECPEP	A375_MHC_IP_R2	2	979.8876953125	1	980.493504	979.486227	0.079959	7.8399E-05	-0.31133	-0.00030526	-0.23137	-0.00022686	980.4930486942601	91.906	1.1656	92.644	92.328	93.494	0.73772					41	22	3	0	0	0	0.58271	1	35193	35193		26.884	7.4447	1	15675000			9352	4403	6623	6676	9139	9139					-0.004336449219067617
EELFELEYQ	9	Unmodified	_EELFELEYQ_					0	0	0			REV__ENSG00000147234|ENST00000683843|FRMPD3	REV__ENSG00000147234|ENST00000683843|FRMPD3	MSMS	A375_MHC_IP_R1	1	600.20263671875	2	600.276969	1198.53938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.945	1	88.945	88.445	89.445	0								0	0	0	0.14359	1	32667	32667		28.487	9.2299	1		+		9353	19580	6624	6677	9140	9140					-0.05194311929903961
EELFELEYQ	9	Unmodified	_EELFELEYQ_					0	0	0			REV__ENSG00000147234|ENST00000683843|FRMPD3	REV__ENSG00000147234|ENST00000683843|FRMPD3	MSMS	A375_MHC_IP_R2	2	600.2031860351562	2	600.276969	1198.53938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.712	1	88.443	87.943	88.943	0.7318								0	0	0	0.099728	1	33365	33365		42.095	11.458	1		+		9354	19580	6624	6677	9141	9141					-0.05194311929903961
EELFFDYRY	9	Unmodified	_EELFFDYRY_					0	0	0		nc|ENSG00000108799|Q92800-2|EZH1;ENSG00000108799|ENST00000428826|EZH1;nc|ENSG00000108799|Q92800-3|EZH1;nc|ENSG00000108799|Q92800-5|EZH1;nc|ENSG00000108799|Q92800-4|EZH1;nc|ENSG00000106462|Q15910-5|EZH2;ENST00000492143.5_1_7:148504740-148513906:-|nuORF;nc|ENSG00000106462|Q15910-3|EZH2;nc|ENSG00000106462|Q15910-4|EZH2;nc|ENSG00000106462|Q15910|EZH2;ENST00000431167.1_1_21:36972032-36972302:-|nuORF;ENSG00000106462|ENST00000320356|EZH2;ENST00000586714.1_1_17:40854552-40854989:-|nuORF	nc|ENSG00000108799|Q92800-2|EZH1	nc|ENSG00000108799|Q92800-2|EZH1	MULTI-MSMS	A375_MHC_IP_R1	1	641.6925659179688	2	641.292953	1280.57135	-0.51699	-0.00033154	0.34645	0.00022218	-0.17054	-0.00010937	641.293153347332	101.5	0.75849	101.5	101.14	101.9	0					23	14	2	0	0	0	0.084766	2	37302	37302;37319		53.404	24.515	1	2148300			9355	2839	6625	6678	9142;9143	9142					-0.05770899456092593
EELFFDYRY	9	Unmodified	_EELFFDYRY_					0	0	0		nc|ENSG00000108799|Q92800-2|EZH1;ENSG00000108799|ENST00000428826|EZH1;nc|ENSG00000108799|Q92800-3|EZH1;nc|ENSG00000108799|Q92800-5|EZH1;nc|ENSG00000108799|Q92800-4|EZH1;nc|ENSG00000106462|Q15910-5|EZH2;ENST00000492143.5_1_7:148504740-148513906:-|nuORF;nc|ENSG00000106462|Q15910-3|EZH2;nc|ENSG00000106462|Q15910-4|EZH2;nc|ENSG00000106462|Q15910|EZH2;ENST00000431167.1_1_21:36972032-36972302:-|nuORF;ENSG00000106462|ENST00000320356|EZH2;ENST00000586714.1_1_17:40854552-40854989:-|nuORF	nc|ENSG00000108799|Q92800-2|EZH1	nc|ENSG00000108799|Q92800-2|EZH1	MULTI-MSMS	A375_MHC_IP_R2	2	642.1934204101562	2	641.292953	1280.57135	-0.58255	-0.00037359	-1.2056	-0.00077312	-1.7881	-0.0011467	641.293075921718	100.86	0.56463	101.62	101.34	101.9	0.76278					27	10	3	0	0	0	0.17338	1	38226	38226		39.95	24.701	1	2198400			9356	2839	6625	6678	9144	9144					-0.05770899456092593
EELFFEAL	8	Unmodified	_EELFFEAL_					0	0	0			REV__nc|ENSG00000170909|Q8IYS5-6|OSCAR	REV__nc|ENSG00000170909|Q8IYS5-6|OSCAR	MULTI-SECPEP	A375_MHC_IP_R2	2	499.62689208984375	2	499.247483	996.480414	-0.73297	-0.00036593	-0.41105	-0.00020521	-1.144	-0.00057115	499.2473820637643	66.011	0.81454	66.749	66.222	67.037	0.73812					23	15	2	0	0	0	0.93416	1	24848	24848		14.582	14.582	1	1193300	+		9357	21031	6626	6679	9145	9145					-0.017967434335673715
EELFFEAL	8	Unmodified	_EELFFEAL_					0	0	0			REV__nc|ENSG00000170909|Q8IYS5-6|OSCAR	REV__nc|ENSG00000170909|Q8IYS5-6|OSCAR	MULTI-MATCH	A375_MHC_IP_R1	1		2	499.247483	996.480414	-0.62456	-0.00031181	0.22644	0.00011305	-0.39812	-0.00019876	499.2475510714808	66.973	0.76471	66.973	66.326	67.091	0	0.1121	0.00030425	NaN	14.582	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1485800	+		9358	21031	6626	6679							-0.017967434335673715
EELFNKLHAI	10	Unmodified	_EELFNKLHAI_					0	0	0			REV__TMCC3|p.S226F|1|0.39|ENSG00000057704|chr12:94581940-94581940|G/A|missense_variant	REV__TMCC3|p.S226F|1|0.39|ENSG00000057704|chr12:94581940-94581940|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	405.6241149902344	3	405.224034	1212.65027	-0.0063042	-2.5546E-06	0.77552	0.00031426	0.76921	0.0003117	405.2241900815997	31.586	0.50859	32.322	32.145	32.654	0.73611					22	9	4	0	0	0	0.65751	1	11191	11191		16.566	1.0274	1	8600200	+		9359	28128	6627	6680	9146	9146					0.0524537256885651
EELFNKNFL	9	Unmodified	_EELFNKNFL_					0	0	0		tr|U7SMT7|U7SMT7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01817PE=3SV=1	tr|U7SMT7|U7SMT7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01817PE=3SV=1	tr|U7SMT7|U7SMT7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01817PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	576.7196655273438	2	577.298039	1152.58152	-0.06872	-3.9672E-05	-1.0489	-0.00060554	-1.1176	-0.00064521	577.2970404428938	90.907	0.65773	91.641	91.261	91.919	0.7345					21	12	3	0	0	0	0.71541	1	34449	34449		3.9444	0	1	3425800			9360	29535	6628	6681	9147	9147					0.011337082691397882
EELFRDGV	8	Unmodified	_EELFRDGV_					0	0	0		nc|ENSG00000171791|P10415-2|BCL2;ENSG00000171791|ENST00000333681|BCL2	nc|ENSG00000171791|P10415-2|BCL2	nc|ENSG00000171791|P10415-2|BCL2	MULTI-MSMS	A375_MHC_IP_R1	1	482.62615966796875	2	482.740357	963.46616	-0.36337	-0.00017541	0.19936	9.6239E-05	-0.16401	-7.9176E-05	482.74008251129527	55.05	0.50756	55.05	54.72	55.228	0					12	9	2	0	0	0	0.77123	1	19599	19599		14.582	2.0501	1	1133500			9361	7638	6629	6682	9148	9148					-0.017033958618526412
EELGELSEQF	10	Unmodified	_EELGELSEQF_					0	0	0		ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2	ENSG00000102910|ENST00000285737|LONP2	ENSG00000102910|ENST00000285737|LONP2	MULTI-SECPEP	A375_MHC_IP_R1	1	591.1723022460938	2	590.772051	1179.52955	-0.29904	-0.00017666	0.60123	0.00035519	0.30219	0.00017853	590.7722785115603	96.422	1.169	96.422	95.917	97.086	0					23	14	2	0	0	0	0.097312	1	35378	35378		103.35	79.333	1	4271700			9362	2402	6630	6683	9149	9149					-0.0530349993530308
EELGELSEQF	10	Unmodified	_EELGELSEQF_					0	0	0		ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2	ENSG00000102910|ENST00000285737|LONP2	ENSG00000102910|ENST00000285737|LONP2	MULTI-SECPEP	A375_MHC_IP_R2	2	591.1723022460938	2	590.772051	1179.52955	-0.45225	-0.00026717	0.67302	0.0003976	0.22077	0.00013043	590.772318127935	95.723	1.2729	96.473	95.633	96.906	0.75045					38	16	3	0	0	0	0.072569	1	36327	36327		89.401	64.41	1	4622300			9363	2402	6630	6683	9150	9150					-0.0530349993530308
EELGFRPEY	9	Unmodified	_EELGFRPEY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	A375_MHC_IP_R1	1	570.6714477539062	2	570.272021	1138.52949	-0.22968	-0.00013098	-0.84936	-0.00048437	-1.079	-0.00061535	570.2720637768263	62.94	4.4834	62.94	62.403	66.887	0					270	87	5	0	0	0	0.025037	1	22670	22670		100.09	61.915	1	148430000			9364	5434	6631	6684	9151	9151					-0.03423455144616128
EELGFRPEY	9	Unmodified	_EELGFRPEY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	A375_MHC_IP_R2	2	571.734619140625	2	570.272021	1138.52949	-0.41432	-0.00023627	-1.0164	-0.0005796	-1.4307	-0.00081588	570.2719392539002	62.308	4.6175	63.051	62.22	66.838	0.74263					245	90	5	0	0	0	0.13845	1	23613	23613		43.772	21.036	1	118080000			9365	5434	6631	6684	9152	9152					-0.03423455144616128
EELGGPPLKKL	11	Unmodified	_EELGGPPLKKL_					0	0	0		ENSG00000166886|ENST00000300131|NAB2;nc|ENSG00000166886|Q15742-3|NAB2	ENSG00000166886|ENST00000300131|NAB2	ENSG00000166886|ENST00000300131|NAB2	MULTI-MSMS	A375_MHC_IP_R1	1	394.6361999511719	3	394.236051	1179.68632	0.0085179	3.3581E-06	0.013435	5.2967E-06	0.021953	8.6548E-06	394.23602615832766	43.902	0.45943	43.902	43.757	44.216	0					16	8	3	0	0	0	0.46568	2	15322	15285;15322		33.821	15.1	1	1746000			9366	7126	6632	6685	9153;9154	9154					0.10366829745726136
EELGHTETY	9	Unmodified	_EELGHTETY_					0	0	0		nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;SBNO2|p.L973Wfs*76|1|0.29|ENSG00000064932|chr19:1110856-1110856|G/-|frameshift_variant;ENST00000592222.5_1_19:1115804-1132196:-|nuORF	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	MULTI-MSMS	A375_MHC_IP_R1	1	540.1376342773438	2	539.738011	1077.46147	-0.75301	-0.00040643	0.025536	1.3783E-05	-0.72747	-0.00039264	539.7380381433842	27.558	0.55576	27.558	27.331	27.887	0					28	10	4	0	0	0	0.0053385	1	8362	8362		162.95	106.77	1	26971000			9367	1363	6633	6686	9155	9155					-0.07416324795258333
EELGHTETY	9	Unmodified	_EELGHTETY_					0	0	0		nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;SBNO2|p.L973Wfs*76|1|0.29|ENSG00000064932|chr19:1110856-1110856|G/-|frameshift_variant;ENST00000592222.5_1_19:1115804-1132196:-|nuORF	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	MULTI-MSMS	A375_MHC_IP_R2	2	540.1381225585938	2	539.738011	1077.46147	-0.97328	-0.00052531	0.27606	0.000149	-0.69722	-0.00037631	539.7381088893212	26.989	0.51158	27.649	27.467	27.978	0.66096					28	9	4	0	0	0	0.0025821	3	9168	9168;9281;9284		139.54	88.689	1	23374000			9368	1363	6633	6686	9156;9157;9158	9156					-0.07416324795258333
EELGLDLATE	10	Unmodified	_EELGLDLATE_					0	0	0			REV__ENST00000511792.5_1_5:39462250-39462322:-|nuORF	REV__ENST00000511792.5_1_5:39462250-39462322:-|nuORF	MSMS	A375_MHC_IP_R1	1	545.20947265625	2	545.269144	1088.52373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.041	1	73.041	72.541	73.541	0								0	0	0	0.14862	1	26585	26585		20.454	0	1		+		9369	25618	6634	6687	9159	9159					-0.01698598446955657
EELGNHKAF	9	Unmodified	_EELGNHKAF_					0	0	0		nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP	nc|ENSG00000173786|P09543-2|CNP	nc|ENSG00000173786|P09543-2|CNP	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1585693359375	2	522.759081	1043.50361	-0.71995	-0.00037636	-0.072534	-3.7918E-05	-0.79248	-0.00041428	522.7590392702781	24.117	0.35609	24.117	23.94	24.296	0					11	6	2	0	0	0	0.011107	1	6766	6766		134.3	63.162	1	27615000			9370	7829	6635	6688	9160	9160					-0.016403045962533724
EELGNHKAF	9	Unmodified	_EELGNHKAF_					0	0	0		nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP	nc|ENSG00000173786|P09543-2|CNP	nc|ENSG00000173786|P09543-2|CNP	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1586303710938	2	522.759081	1043.50361	-0.8712	-0.00045543	-0.32043	-0.00016751	-1.1916	-0.00062294	522.7588257030238	23.424	0.30341	24.054	23.928	24.232	0.63014					9	5	2	0	0	0	0.011405	1	7544	7544		110.67	49.317	1	15782000			9371	7829	6635	6688	9161	9161					-0.016403045962533724
EELGQVKY	8	Unmodified	_EELGQVKY_					0	0	0		nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1;nc|ENSG00000132932|Q9NTI2-3|ATP8A2;nc|ENSG00000132932|Q9NTI2-1|ATP8A2;ENSG00000132932|ENST00000381655|ATP8A2	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000132932|Q9NTI2-3|ATP8A2	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6376037597656	2	483.250557	964.486562	-0.86595	-0.00041847	0.13217	6.387E-05	-0.73378	-0.0003546	483.2506863149198	38.831	0.46134	39.605	39.351	39.812	0.77451					17	8	3	0	0	0	0.86263	1	14297	14297		34.102	0	1	2846400			9372	3898;4464	6636	6689	9162	9162					0.002897747979545784
EELGSHNLF	9	Unmodified	_EELGSHNLF_					0	0	0			REV__ENSG00000179673|ENST00000322329|RPRML	REV__ENSG00000179673|ENST00000322329|RPRML	MULTI-MSMS	A375_MHC_IP_R1	1	523.6504516601562	2	523.251089	1044.48762	-0.72321	-0.00037842	0.12184	6.3753E-05	-0.60137	-0.00031467	523.2511705702353	26.903	2.017	26.903	26.474	28.491	0					88	39	5	0	0	0	0.082375	1	7987	7987		53.833	11.738	1	280510000	+		9373	21575	6637	6690	9163	9163					-0.032840108331583906
EELGSHNLF	9	Unmodified	_EELGSHNLF_					0	0	0			REV__ENSG00000179673|ENST00000322329|RPRML	REV__ENSG00000179673|ENST00000322329|RPRML	MULTI-SECPEP	A375_MHC_IP_R2	2	523.6507568359375	2	523.251089	1044.48762	-0.93982	-0.00049176	0.038333	2.0058E-05	-0.90149	-0.00047171	523.2511189881144	26.323	1.6304	26.983	26.551	28.181	0.65992					86	31	5	0	0	0	0.24324	1	8789	8789		53.833	11.738	1	289310000	+		9374	21575	6637	6690	9164	9164					-0.032840108331583906
EELGSNTGI	9	Unmodified	_EELGSNTGI_					0	0	0		ENSG00000135919|ENST00000409304|SERPINE2;chr2:224001922-224030072|455|26.05|0.76|5.1|-|ENST00000409840|SERPINE2,SERPINE2;nc|ENSG00000135919|P07093|SERPINE2;nc|ENSG00000135919|P07093-3|SERPINE2;chr2:224001922-224010343|462|38.94|0.94|5.37|-|ENST00000454956|SERPINE2,SERPINE2;ENST00000489065.1_1_2:224866320-224903835:-|nuORF;chr2:224001922-224030370|452|23.97|0.69|5.11|-|ENST00000423446|SERPINE2,SERPINE2	ENSG00000135919|ENST00000409304|SERPINE2	ENSG00000135919|ENST00000409304|SERPINE2	MULTI-SECPEP	A375_MHC_IP_R2	2	919.2156372070312	1	919.436717	918.429441	-0.18528	-0.00017035	-0.41084	-0.00037774	-0.59612	-0.0005481	919.4362361472454	47.661	0.60927	48.422	48.073	48.682	0.76127					17	11	2	0	0	0	0.0042279	1	17795	17795		163.04	77.764	1	4365100			9375	463	6638	6691	9165	9165					-0.03303692478436915
EELGTGLIQQY	11	Unmodified	_EELGTGLIQQY_					0	0	0		ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	MULTI-SECPEP	A375_MHC_IP_R1	1	626.217041015625	2	625.816793	1249.61903	-0.71701	-0.00044872	0.28655	0.00017933	-0.43046	-0.00026939	625.8168456217262	94.595	0.40912	94.595	94.343	94.752	0					11	7	2	0	0	0	0.16898	1	34787	34787		55.503	17.327	1	1409200			9376	1453	6639	6692	9166	9166					0.004207547441183124
EELGTGLIQQY	11	Unmodified	_EELGTGLIQQY_					0	0	0		ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	MULTI-SECPEP	A375_MHC_IP_R2	2	626.2182006835938	2	625.816793	1249.61903	-0.61586	-0.00038541	1.087	0.00068027	0.47115	0.00029486	625.8175408733423	94.079	0.40318	94.823	94.566	94.969	0.74473					14	7	2	0	0	0	0.73984	1	35760	35760		36.506	2.1045	1	1307600			9377	1453	6639	6692	9167	9167					0.004207547441183124
EELGVLYIF	9	Unmodified	_EELGVLYIF_					0	0	0			REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	MULTI-SECPEP	A375_MHC_IP_R1	1	541.1748657226562	2	541.792058	1081.56956	-0.848	-0.00045944	1.5098	0.00081798	0.66176	0.00035854	541.7925097945529	90.91	0.25392	90.91	90.794	91.048	0					6	4	2	0	0	0	0.69504	1	33444	33444		12.532	5.2423	1	862270	+		9378	20763	6640	6693	9168	9168					0.03204091525935837
EELHHILFA	9	Unmodified	_EELHHILFA_					0	0	0		ENSG00000258083|ENST00000641559|OR9A4	ENSG00000258083|ENST00000641559|OR9A4	ENSG00000258083|ENST00000641559|OR9A4	MULTI-MSMS	A375_MHC_IP_R2	2	370.5924072265625	3	370.197708	1107.57129	-0.10451	-3.8688E-05	0.10906	4.0375E-05	0.0045561	1.6866E-06	370.19779796036386	25.899	0.5605	26.559	26.347	26.907	0.65992					25	10	4	0	0	0	0.59266	1	8761	8761		15.248	15.248	1	5553800			9379	9914	6641	6694	9169	9169					0.021811453345662812
EELHLVVLRQ	10	Unmodified	_EELHLVVLRQ_					0	0	0			REV__ENSG00000104899|ENST00000221496|AMH	REV__ENSG00000104899|ENST00000221496|AMH	MULTI-SECPEP	A375_MHC_IP_R1	1	618.7584228515625	2	618.358962	1234.70337	-0.49557	-0.00030644	-0.029649	-1.8334E-05	-0.52522	-0.00032478	618.3588318066295	19.511	0.3056	19.511	19.368	19.674	0					12	5	3	0	0	0	0.94516	1	4891	4891		1.4819	0	1	3668900	+		9380	17350	6642	6695	9170	9170					0.0954075035151618
EELIEKRW	8	Unmodified	_EELIEKRW_					0	0	0			REV__nc|ENSG00000054611|Q8WUA7-2|TBC1D22A	REV__nc|ENSG00000054611|Q8WUA7-2|TBC1D22A	MULTI-MSMS	A375_MHC_IP_R2	2	552.1979370117188	2	551.798206	1101.58186	-0.68471	-0.00037782	0.25339	0.00013982	-0.43133	-0.00023801	551.7982476946967	79.144	0.45647	79.888	79.54	79.997	0.74474					12	8	2	0	0	0	0.74098	1	30051	30051		28.487	0	1	2012100	+		9381	16406	6643	6696	9171	9171					0.03513127989003806
EELIKALDP	9	Unmodified	_EELIKALDP_					0	0	0			REV__ENSG00000175344|ENST00000306901|CHRNA7	REV__ENSG00000175344|ENST00000306901|CHRNA7	MULTI-MSMS	A375_MHC_IP_R2	2	1029.781982421875	1	1027.567	1026.55973	0.20849	0.00021424	0.83349	0.00085647	1.042	0.0010707	1027.567411316335	110.95	0.6617	111.69	111.29	111.96	0.73692					38	12	4	0	0	0	0.55818	1	41735	41735		16.942	3.4344	1	12080000	+		9382	21338	6644	6697	9172	9172					0.04750903520562133
EELIKEGDTA	10	Unmodified	_EELIKEGDTA_					0	0	0		ENSG00000166166|ENST00000389749|TRMT61A	ENSG00000166166|ENST00000389749|TRMT61A	ENSG00000166166|ENST00000389749|TRMT61A	MULTI-MSMS	A375_MHC_IP_R2	2	553.6515502929688	2	552.774593	1103.53463	-0.76113	-0.00042073	3.5173	0.0019442	2.7561	0.0015235	553.2794119673218	70.587	0.40456	71.322	71.048	71.453	0.73421					16	7	3	0	0	0	0.25355	1	26729	26729		43.772	3.8151	1	1656700			9383	7033	6645	6698	9173	9173					-0.012991960726367324
EELINYRQVD	10	Unmodified	_EELINYRQVD_					0	0	0			REV__nc|ENSG00000007171|P35228-2|NOS2	REV__nc|ENSG00000007171|P35228-2|NOS2	MULTI-MSMS	A375_MHC_IP_R1	1	427.28228759765625	3	426.882337	1277.62518	0.25979	0.0001109	-0.4434	-0.00018928	-0.1836	-7.8377E-05	426.88229100737084	22.704	0.35346	22.704	22.52	22.873	0					15	6	4	0	0	0	0.70442	1	6149	6149		10.315	1.0715	1	3336600	+		9384	16150	6646	6699	9174	9174					-0.0025272702441725414
EELINYRQVD	10	Unmodified	_EELINYRQVD_					0	0	0			REV__nc|ENSG00000007171|P35228-2|NOS2	REV__nc|ENSG00000007171|P35228-2|NOS2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	426.882337	1277.62518	-0.52721	-0.00022506	-0.074555	-3.1826E-05	-0.60177	-0.00025688	426.8823521425945	22.303	0.35828	22.922	22.744	23.102	0.61932	0.10944	0.00020525	NaN	10.315	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3184500	+		9385	16150	6646	6699							-0.0025272702441725414
EELIRDFKK	9	Unmodified	_EELIRDFKK_					0	0	0			REV__CFAP53|p.E359K|1|0.55|ENSG00000172361|chr18:50243038-50243038|C/T|missense_variant	REV__CFAP53|p.E359K|1|0.55|ENSG00000172361|chr18:50243038-50243038|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	393.25946044921875	3	393.224034	1176.65027	-0.61201	-0.00024066	0.41147	0.0001618	-0.20054	-7.8857E-05	393.22416543544745	25.107	0.45918	25.751	25.619	26.078	0.64368					13	8	3	0	0	0	0.39434	1	8307	8307		24.991	2.3329	1	4635500	+		9386	15646	6647	6700	9175	9175					0.0690137256883645
EELKAQDIC	9	Unmodified	_EELKAQDIC_					0	0	0			REV__nc|ENSG00000139734|Q9NSV4-2|DIAPH3	REV__nc|ENSG00000139734|Q9NSV4-2|DIAPH3	MSMS	A375_MHC_IP_R1	1	524.6768188476562	2	524.752607	1047.49066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.759	1	50.759	50.259	51.259	0								0	0	0	0.1535	1	17994	17994		15.847	1.2655	1		+		9387	19178	6648	6701	9176	9176					-0.031185037706336516
EELKCHPNL	9	Unmodified	_EELKCHPNL_					0	0	0			REV__ENSG00000162415|ENST00000359600|ZSWIM5	REV__ENSG00000162415|ENST00000359600|ZSWIM5	MULTI-SECPEP	A375_MHC_IP_R1	1	542.1539916992188	2	541.768591	1081.52263	-0.62596	-0.00033913	-1.7077	-0.00092518	-2.3337	-0.0012643	541.767133230723	79.853	0.30606	79.853	79.625	79.931	0					8	5	2	0	0	0	0.62767	1	29142	29142		7.2892	0	1	586550	+		9388	20251	6649	6702	9177	9177					-0.014870912968490302
EELKELKEY	9	Unmodified	_EELKELKEY_					0	0	0		ENSG00000172775|ENST00000309137|PSME3IP1;tr|U7SU84|U7SU84_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01140PE=4SV=1	ENSG00000172775|ENST00000309137|PSME3IP1	ENSG00000172775|ENST00000309137|PSME3IP1	MULTI-MSMS	A375_MHC_IP_R1	1	394.6082763671875	3	394.20805	1179.60232	0.071709	2.8268E-05	0.24643	9.7146E-05	0.31814	0.00012541	394.2081370904529	33.781	1.0623	33.781	33.445	34.507	0					63	20	5	0	0	0	0.018166	1	11032	11032		85.764	30.53	1	93360000			9389	7735	6650	6703	9178	9178					0.01970253858144133
EELKELKEY	9	Unmodified	_EELKELKEY_					0	0	0		ENSG00000172775|ENST00000309137|PSME3IP1;tr|U7SU84|U7SU84_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01140PE=4SV=1	ENSG00000172775|ENST00000309137|PSME3IP1	ENSG00000172775|ENST00000309137|PSME3IP1	MULTI-SECPEP	A375_MHC_IP_R1	1	591.2080688476562	2	590.808436	1179.60232	-0.27498	-0.00016246	0.26092	0.00015415	-0.014057	-8.3052E-06	590.8085391828437	33.8	0.60645	33.8	33.547	34.154	0					35	11	4	0	0	0	0.0058868	1	11045	11045		211.85	108.5	1	41524000			9390	7735	6650	6703	9179	9179					0.01970253858144133
EELKELKEY	9	Unmodified	_EELKELKEY_					0	0	0		ENSG00000172775|ENST00000309137|PSME3IP1;tr|U7SU84|U7SU84_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01140PE=4SV=1	ENSG00000172775|ENST00000309137|PSME3IP1	ENSG00000172775|ENST00000309137|PSME3IP1	MULTI-MSMS	A375_MHC_IP_R2	2	394.94244384765625	3	394.20805	1179.60232	-0.30629	-0.00012074	0.13379	5.2742E-05	-0.1725	-6.8E-05	394.208083159089	33.063	1.066	33.815	33.534	34.6	0.75225					63	20	5	0	0	0	0.018166	1	11778	11778		85.764	30.53	1	109950000			9391	7735	6650	6703	9180	9180					0.01970253858144133
EELKELKEY	9	Unmodified	_EELKELKEY_					0	0	0		ENSG00000172775|ENST00000309137|PSME3IP1;tr|U7SU84|U7SU84_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01140PE=4SV=1	ENSG00000172775|ENST00000309137|PSME3IP1	ENSG00000172775|ENST00000309137|PSME3IP1	MULTI-SECPEP	A375_MHC_IP_R2	2	591.2080688476562	2	590.808436	1179.60232	-0.70461	-0.00041629	0.19993	0.00011812	-0.50468	-0.00029817	590.808480473934	33.062	0.66261	33.814	33.584	34.247	0.75225					37	12	4	0	0	0	0.0095117	1	11793	11793		197.81	105.15	1	39523000			9392	7735	6650	6703	9181	9181					0.01970253858144133
EELKERLPS	9	Unmodified	_EELKERLPS_					0	0	0			REV__nc|ENSG00000116698|Q92540-2|SMG7	REV__nc|ENSG00000116698|Q92540-2|SMG7	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2002563476562	2	550.800946	1099.58734	-0.86869	-0.00047847	0.1996	0.00010994	-0.66909	-0.00036853	550.8008281367555	26.326	0.40595	26.326	26.118	26.524	0					12	7	2	0	0	0	0.51395	1	7854	7854		24.991	0	1	2507200	+		9393	17966	6651	6704	9182	9182					0.041528067808030755
EELKERLPS	9	Unmodified	_EELKERLPS_					0	0	0			REV__nc|ENSG00000116698|Q92540-2|SMG7	REV__nc|ENSG00000116698|Q92540-2|SMG7	MULTI-MATCH	A375_MHC_IP_R2	2		2	550.800946	1099.58734	-1.2367	-0.00068116	0.49597	0.00027318	-0.74071	-0.00040798	550.8011022913105	25.681	0.35698	26.341	26.194	26.551	0.65992	0.0076107	0.00013181	NaN	24.991	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1247200	+		9394	17966	6651	6704							0.041528067808030755
EELKETIKKL	10	Unmodified	_EELKETIKKL_					0	0	0		nc|ENSG00000124795|P35659-2|DEK;ENSG00000124795|ENST00000652689|DEK	nc|ENSG00000124795|P35659-2|DEK	nc|ENSG00000124795|P35659-2|DEK	MULTI-MSMS	A375_MHC_IP_R1	1	411.3150634765625	3	410.914978	1229.7231	-0.064549	-2.6524E-05	0.029866	1.2272E-05	-0.034683	-1.4252E-05	410.9149414503571	31.133	0.86086	31.133	30.806	31.667	0					48	16	5	0	0	0	0.0083664	1	9906	9906		130.09	54.023	1	36377000			9395	3933	6652	6705	9183	9183					0.11743081571603398
EELKETIKKL	10	Unmodified	_EELKETIKKL_					0	0	0		nc|ENSG00000124795|P35659-2|DEK;ENSG00000124795|ENST00000652689|DEK	nc|ENSG00000124795|P35659-2|DEK	nc|ENSG00000124795|P35659-2|DEK	MULTI-MSMS	A375_MHC_IP_R1	1	616.2686157226562	2	615.868828	1229.7231	-0.47745	-0.00029405	0.038262	2.3564E-05	-0.43919	-0.00027048	615.8688023869297	31.091	0.35379	31.091	30.959	31.312	0					13	6	3	0	0	0	0.013417	1	9965	9965		111.31	50.219	1	2370500			9396	3933	6652	6705	9184	9184					0.11743081571603398
EELKETIKKL	10	Unmodified	_EELKETIKKL_					0	0	0		nc|ENSG00000124795|P35659-2|DEK;ENSG00000124795|ENST00000652689|DEK	nc|ENSG00000124795|P35659-2|DEK	nc|ENSG00000124795|P35659-2|DEK	MULTI-MSMS	A375_MHC_IP_R2	2	411.31500244140625	3	410.914978	1229.7231	-0.038567	-1.5848E-05	0.068975	2.8343E-05	0.030408	1.2495E-05	410.9149791717917	30.269	0.65932	30.987	30.708	31.367	0.71857					38	12	5	0	0	0	0.008954	1	10602	10602		107.51	19.636	1	40972000			9397	3933	6652	6705	9185	9185					0.11743081571603398
EELKETIKKL	10	Unmodified	_EELKETIKKL_					0	0	0		nc|ENSG00000124795|P35659-2|DEK;ENSG00000124795|ENST00000652689|DEK	nc|ENSG00000124795|P35659-2|DEK	nc|ENSG00000124795|P35659-2|DEK	MULTI-MSMS	A375_MHC_IP_R2	2	616.2685546875	2	615.868828	1229.7231	-0.67118	-0.00041336	0.24083	0.00014832	-0.43036	-0.00026504	615.869013692718	30.269	0.3046	30.988	30.809	31.114	0.71857					9	5	2	0	0	0	0.086529	1	10663	10663		75.571	40.639	1	2979100			9398	3933	6652	6705	9186	9186					0.11743081571603398
EELKETIKKLL	11	Unmodified	_EELKETIKKLL_					0	0	0		nc|ENSG00000124795|P35659-2|DEK;ENSG00000124795|ENST00000652689|DEK	nc|ENSG00000124795|P35659-2|DEK	nc|ENSG00000124795|P35659-2|DEK	MULTI-MSMS	A375_MHC_IP_R1	1	449.0096130371094	3	448.609666	1342.80717	-0.25525	-0.00011451	0.37386	0.00016772	0.11861	5.3208E-05	448.60979349197737	38.491	0.61218	38.491	38.168	38.78	0					31	11	4	0	0	0	0.72949	1	13038	13038		4.7159	0	1	7017700			9399	3933	6653	6706	9187	9187					0.1494761266851583
EELKETIKKLL	11	Unmodified	_EELKETIKKLL_					0	0	0		nc|ENSG00000124795|P35659-2|DEK;ENSG00000124795|ENST00000652689|DEK	nc|ENSG00000124795|P35659-2|DEK	nc|ENSG00000124795|P35659-2|DEK	MULTI-MSMS	A375_MHC_IP_R2	2	449.0093078613281	3	448.609666	1342.80717	-0.66081	-0.00029645	0.24115	0.00010818	-0.41966	-0.00018826	448.60974042787035	37.471	0.76646	38.242	37.917	38.684	0.7709					30	14	3	0	0	0	0.72949	1	13725	13725		4.7159	0	1	4110800			9400	3933	6653	6706	9188	9188					0.1494761266851583
EELKFVAFY	9	Unmodified	_EELKFVAFY_					0	0	0		ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENST00000486003.1_1_22:21331981-21333992:+|nuORF;nc|ENSG00000183773|Q96NN9-3|AIFM3;nc|ENSG00000183773|Q96NN9-2|AIFM3;ENSG00000183773|ENST00000440238|AIFM3	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MSMS	A375_MHC_IP_R2	2	573.21435546875	2	573.297507	1144.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.723	1	30.422	29.922	30.922	0.69872								0	0	0	0.15486	1	10401	10401		13.508	1.8676	1				9401	12479	6654	6707	9189	9189					0.013954939002360334
EELKIPKDY	9	Unmodified	_EELKIPKDY_					0	0	0		ENSG00000168246|ENST00000393792|UBTD2	ENSG00000168246|ENST00000393792|UBTD2	ENSG00000168246|ENST00000393792|UBTD2	MULTI-SECPEP	A375_MHC_IP_R1	1	379.2729797363281	3	378.87289	1133.59684	0.53755	0.00020366	-0.31316	-0.00011865	0.22439	8.5016E-05	378.8727419212493	42.753	0.65916	42.753	42.487	43.146	0					26	12	4	0	0	0	0.57806	1	14809	14809		14.957	1.4385	1	9851100			9402	7276	6655	6708	9190	9190					0.03538575066318117
EELKIPKDY	9	Unmodified	_EELKIPKDY_					0	0	0		ENSG00000168246|ENST00000393792|UBTD2	ENSG00000168246|ENST00000393792|UBTD2	ENSG00000168246|ENST00000393792|UBTD2	MULTI-SECPEP	A375_MHC_IP_R1	1	568.205322265625	2	567.805697	1133.59684	-0.15449	-8.7723E-05	1.0929	0.00062057	0.93843	0.00053285	567.8054443722832	42.769	0.9635	42.769	42.233	43.197	0					31	17	3	0	0	0	0.23711	1	14823	14823		64.927	42.269	1	3173600			9403	7276	6655	6708	9191	9191					0.03538575066318117
EELKIPKDY	9	Unmodified	_EELKIPKDY_					0	0	0		ENSG00000168246|ENST00000393792|UBTD2	ENSG00000168246|ENST00000393792|UBTD2	ENSG00000168246|ENST00000393792|UBTD2	MULTI-SECPEP	A375_MHC_IP_R2	2	379.27288818359375	3	378.87289	1133.59684	0.14705	5.5713E-05	0.058072	2.2002E-05	0.20512	7.7715E-05	378.87283685060925	42.112	0.71593	42.884	42.451	43.167	0.7724					26	13	3	0	0	0	0.57806	1	15610	15610		30.703	7.9285	1	10958000			9404	7276	6655	6708	9192	9192					0.03538575066318117
EELKIPKDY	9	Unmodified	_EELKIPKDY_					0	0	0		ENSG00000168246|ENST00000393792|UBTD2	ENSG00000168246|ENST00000393792|UBTD2	ENSG00000168246|ENST00000393792|UBTD2	MULTI-SECPEP	A375_MHC_IP_R2	2	568.2051391601562	2	567.805697	1133.59684	-0.31554	-0.00017916	0.066196	3.7586E-05	-0.24934	-0.00014158	567.805170793361	42.026	0.56284	42.8	42.453	43.016	0.77451					15	10	2	0	0	0	0.43936	1	15647	15647		53.317	30.659	1	2544100			9405	7276	6655	6708	9193	9193					0.03538575066318117
EELKKIRGF	9	Unmodified	_EELKKIRGF_					0	0	0		nc|ENSG00000075651|Q13393-2|PLD1;ENSG00000075651|ENST00000351298|PLD1	nc|ENSG00000075651|Q13393-2|PLD1	nc|ENSG00000075651|Q13393-2|PLD1	MULTI-SECPEP	A375_MHC_IP_R1	1	560.6564331054688	2	560.329673	1118.64479	-0.39992	-0.00022409	0.094488	5.2944E-05	-0.30543	-0.00017114	560.3297294936577	35.096	0.45731	35.096	34.912	35.369	0					16	8	3	0	0	0	0.71541	1	11577	11577		11.64	0	1	5394700			9406	1617	6656	6709	9194	9194					0.09021693777026485
EELKLKEKTY	10	Unmodified	_EELKLKEKTY_					0	0	0		nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6	nc|ENSG00000139505|Q9Y217-2|MTMR6	nc|ENSG00000139505|Q9Y217-2|MTMR6	MULTI-MSMS	A375_MHC_IP_R1	1	427.974853515625	3	427.574732	1279.70237	-0.41605	-0.00017789	0.53342	0.00022808	0.11737	5.0183E-05	427.5749247251916	23.709	0.20315	23.709	23.584	23.787	0					9	3	3	0	0	0	0.34817	1	6600	6600		37.251	13.287	1	7355600			9407	5080	6657	6710	9195	9195					0.07370491191954898
EELKLKEKTY	10	Unmodified	_EELKLKEKTY_					0	0	0		nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6	nc|ENSG00000139505|Q9Y217-2|MTMR6	nc|ENSG00000139505|Q9Y217-2|MTMR6	MULTI-SECPEP	A375_MHC_IP_R2	2	428.3088684082031	3	427.574732	1279.70237	-0.52951	-0.00022641	0.28942	0.00012375	-0.24009	-0.00010266	427.5747575375712	21.737	0.35764	22.357	22.132	22.49	0.61932					13	6	3	0	0	0	0.74574	1	6885	6885		23.016	11.95	1	2330400			9408	5080	6657	6710	9196	9196					0.07370491191954898
EELKMVMNR	9	Unmodified	_EELKMVMNR_					0	0	0			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MSMS	A375_MHC_IP_R1	1	575.2247924804688	2	575.291376	1148.5682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.191	1	64.191	63.691	64.691	0								0	0	0	0.15283	1	23220	23220		16.942	0	1		+		9409	18434	6658	6711	9197	9197					-0.00014189106104822713
EELKQIIKL	9	Unmodified	_EELKQIIKL_					0	0	0		ENSG00000088205|ENST00000263239|DDX18;ENST00000489933.1_1_2:118579619-118579842:+|nuORF;ENST00000534547.1_1_11:130165680-130166253:+|nuORF	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-SECPEP	A375_MHC_IP_R1	1	557.7470703125	2	557.347532	1112.68051	-0.58799	-0.00032772	0.34552	0.00019257	-0.24248	-0.00013514	557.3476649288407	64.675	0.45875	64.675	64.444	64.903	0					18	8	3	0	0	0	0.30925	1	23395	23395		49.554	24.563	1	3089200			9410	1885	6659	6712	9198	9198					0.1286773123401872
EELKQIIKL	9	Unmodified	_EELKQIIKL_					0	0	0		ENSG00000088205|ENST00000263239|DDX18;ENST00000489933.1_1_2:118579619-118579842:+|nuORF;ENST00000534547.1_1_11:130165680-130166253:+|nuORF	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-MSMS	A375_MHC_IP_R2	2	557.7472534179688	2	557.347532	1112.68051	-0.69465	-0.00038716	0.51191	0.00028531	-0.18274	-0.00010185	557.3478261928024	63.721	0.55842	64.461	64.191	64.749	0.74023					19	10	3	0	0	0	0.074484	1	24174	24174		59.368	20.754	1	2626100			9411	1885	6659	6712	9199	9199					0.1286773123401872
EELKRLDTHL	10	Unmodified	_EELKRLDTHL_					0	0	0		ENST00000497526.1_1_2:113482708-113488660:+|nuORF;nc|ENSG00000144130|Q86YG4|NT5DC4;ENSG00000144130|ENST00000688554|NT5DC4	ENST00000497526.1_1_2:113482708-113488660:+|nuORF	ENST00000497526.1_1_2:113482708-113488660:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	418.2783203125	3	418.56646	1252.67755	-0.59258	-0.00024803	0.26019	0.00010891	-0.33239	-0.00013913	418.5665364568141	33.709	0.60732	34.461	34.146	34.753	0.75225					38	11	4	0	0	0	0.68889	1	12065	12065		14.218	3.6907	1	25922000			9412	5465	6660	6713	9200	9200					0.06131856109232103
EELKRLDTHL	10	Unmodified	_EELKRLDTHL_					0	0	0		ENST00000497526.1_1_2:113482708-113488660:+|nuORF;nc|ENSG00000144130|Q86YG4|NT5DC4;ENSG00000144130|ENST00000688554|NT5DC4	ENST00000497526.1_1_2:113482708-113488660:+|nuORF	ENST00000497526.1_1_2:113482708-113488660:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	418.9664306640625	3	418.56646	1252.67755	-0.081559	-3.4138E-05	0.13717	5.7415E-05	0.055611	2.3277E-05	418.5664444915075	31.767	0.35442	32.503	32.3	32.654	0.73691					14	6	3	0	0	0	0.93041	1	11254	11254		7.9454	0	1	4237200			9413	5465	6660	6713	9201	9201					0.06131856109232103
EELLDEQAWR	10	Unmodified	_EELLDEQAWR_					0	0	0			REV__ENSG00000171148|ENST00000301964|TADA3	REV__ENSG00000171148|ENST00000301964|TADA3	MULTI-MSMS	A375_MHC_IP_R1	1	430.61981201171875	3	430.210453	1287.60953	-0.10973	-4.7207E-05	-0.32586	-0.00014019	-0.43559	-0.0001874	430.2101356227963	20.16	0.50616	20.16	19.928	20.435	0					22	9	3	0	0	0	0.70793	1	5187	5187		7.9454	3.8288	1	5845300	+		9414	21047	6661	6714	9202	9202					-0.02277013541447559
EELLFSHKL	9	Unmodified	_EELLFSHKL_					0	0	0		nc|ENSG00000172661|Q9Y4E1-5|WASHC2C;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C;nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A;ENST00000374359.1_1_10:46274511-46281094:+|nuORF	nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	MULTI-MSMS	A375_MHC_IP_R1	1	558.7083129882812	2	558.308406	1114.60226	-0.5039	-0.00028133	-0.3407	-0.00019022	-0.8446	-0.00047155	558.3083616961361	60.083	0.50924	60.083	59.752	60.261	0					18	9	3	0	0	0	0.048392	1	21641	21641		79.596	27.966	1	2436900			9415	7728	6662	6715	9203	9203					0.04954298648817712
EELLFSHKL	9	Unmodified	_EELLFSHKL_					0	0	0		nc|ENSG00000172661|Q9Y4E1-5|WASHC2C;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C;nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A;ENST00000374359.1_1_10:46274511-46281094:+|nuORF	nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	MULTI-MATCH	A375_MHC_IP_R2	2		2	558.308406	1114.60226	-1.1235	-0.00062728	-0.097603	-5.4492E-05	-1.2211	-0.00068177	558.8098784616487	59.198	0.35542	59.945	59.641	59.996	0.74714	-0.068614	0.00011766	NaN	79.596	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2237700			9416	7728	6662	6715							0.04954298648817712
EELLGDGHSY	10	Unmodified	_EELLGDGHSY_					0	0	0		ENSG00000159377|ENST00000290541|PSMB4;ENST00000495288.5_1_1:151372054-151373071:+|nuORF;ENST00000474100.1_1_1:151372658-151373852:+|nuORF	ENSG00000159377|ENST00000290541|PSMB4	ENSG00000159377|ENST00000290541|PSMB4	MULTI-MSMS	A375_MHC_IP_R1	1	560.6509399414062	2	560.251286	1118.48802	-0.57163	-0.00032026	0.19103	0.00010703	-0.3806	-0.00021323	560.2513835797904	46.52	2.2315	46.52	46.144	48.375	0					137	43	6	0	0	0	2.6697E-07	4	16267	16267;16276;16489;16525		205.78	133.86	1	494910000			9417	6369	6663	6716	9204;9205;9206;9207	9204					-0.06648635903934519
EELLGDGHSY	10	Unmodified	_EELLGDGHSY_					0	0	0		ENSG00000159377|ENST00000290541|PSMB4;ENST00000495288.5_1_1:151372054-151373071:+|nuORF;ENST00000474100.1_1_1:151372658-151373852:+|nuORF	ENSG00000159377|ENST00000290541|PSMB4	ENSG00000159377|ENST00000290541|PSMB4	MULTI-MSMS	A375_MHC_IP_R1	1	560.65087890625	2	560.251286	1118.48802	-0.51728	-0.00028981	0.46548	0.00026078	-0.051808	-2.9025E-05	560.251449572603	50.382	0.66393	50.382	50.049	50.713	0					26	12	3	0	0	0	0.01165	1	17834	17834		114.65	59.146	1	8468700			9418	6369	6663	6716	9208	9208					-0.06648635903934519
EELLGDGHSY	10	Unmodified	_EELLGDGHSY_					0	0	0		ENSG00000159377|ENST00000290541|PSMB4;ENST00000495288.5_1_1:151372054-151373071:+|nuORF;ENST00000474100.1_1_1:151372658-151373852:+|nuORF	ENSG00000159377|ENST00000290541|PSMB4	ENSG00000159377|ENST00000290541|PSMB4	MULTI-MSMS	A375_MHC_IP_R2	2	560.6508178710938	2	560.251286	1118.48802	-0.60754	-0.00034038	0.17493	9.8003E-05	-0.43261	-0.00024237	560.2514189686942	45.862	2.0779	46.627	46.201	48.279	0.76519					128	40	5	0	0	0	0.0013304	4	17078	17078;17293;17305;17531		144.35	72.428	1	463400000			9419	6369	6663	6716	9209;9210;9211;9212	9209					-0.06648635903934519
EELLGDGHSY	10	Unmodified	_EELLGDGHSY_					0	0	0		ENSG00000159377|ENST00000290541|PSMB4;ENST00000495288.5_1_1:151372054-151373071:+|nuORF;ENST00000474100.1_1_1:151372658-151373852:+|nuORF	ENSG00000159377|ENST00000290541|PSMB4	ENSG00000159377|ENST00000290541|PSMB4	MULTI-MSMS	A375_MHC_IP_R2	2	560.65087890625	2	560.251286	1118.48802	-0.91177	-0.00051082	0.20925	0.00011723	-0.70252	-0.00039359	560.2513861440708	49.766	0.91323	50.52	49.89	50.804	0.75406					41	17	4	0	0	0	0.011479	1	18671	18671		118.89	65.062	1	9062300			9420	6369	6663	6716	9213	9213					-0.06648635903934519
EELLKEFESE	10	Unmodified	_EELLKEFESE_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.R7429Ifs*19|1|0.07|ENSG00000131018|chr6:152214911-152214966|TCTTTCTGTAGTCTGAGAGGAGATCAGAGACCAATGGCGGTTCAGATTCTGCATTC/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-10|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MSMS	A375_MHC_IP_R2	2	626.6945190429688	2	626.800808	1251.58706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.597	1	96.347	95.847	96.847	0.75045								0	0	0	0.15158	1	36310	36310		14.838	1.7958	1				9421	4300	6664	6717	9214	9214					-0.028666577297144613
EELLKELVE	9	Unmodified	_EELLKELVE_					0	0	0		tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1	tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1	tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	551.2314453125	2	551.305529	1100.59651	-1.1077	-0.0006107	-1.7386	-0.00095849	-2.8463	-0.0015692	551.3044328027132	33.334	0.35587	34.087	33.891	34.247	0.75225					9	6	2	0	0	0	0.58271	1	11937	11937		26.884	3.7352	1	1164600			9422	30045	6665	6718	9215	9215					0.05023155346475505
EELLLLQPEL	10	Unmodified	_EELLLLQPEL_					0	0	0		nc|ENSG00000146112|Q6NYC8-4|PPP1R18;nc|ENSG00000146112|Q6NYC8-3|PPP1R18;ENSG00000146112|ENST00000274853|PPP1R18	nc|ENSG00000146112|Q6NYC8-4|PPP1R18	nc|ENSG00000146112|Q6NYC8-4|PPP1R18	MULTI-MSMS	A375_MHC_IP_R2	2	399.9638366699219	3	399.563945	1195.67001	-0.59034	-0.00023588	0.18518	7.3993E-05	-0.40515	-0.00016188	399.56395628572153	52.888	0.91629	53.639	53.385	54.301	0.75105					38	17	3	0	0	0	0.6502	1	19949	19949		10.899	0	1	6840300			9423	5604	6666	6719	9216	9216					0.07999703788982515
EELLLNQMMW	10	Unmodified	_EELLLNQMMW_					0	0	0			REV__ENST00000583051.1_1_18:24412068-24412179:-|nuORF	REV__ENST00000583051.1_1_18:24412068-24412179:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	435.9470520019531	3	436.21052	1305.60973	-0.44961	-0.00019612	-0.65767	-0.00028688	-1.1073	-0.00048301	436.21000400621824	23.61	0.45729	23.61	23.483	23.94	0					9	8	2	0	0	0	0.89761	1	6528	6528		19.626	3.0601	1	2546900	+		9424	16561	6667	6720	9217	9217					-0.030850531374426282
EELLLRLY	8	Unmodified	_EELLLRLY_					0	0	0			REV__ENSG00000138246|ENST00000260818|DNAJC13	REV__ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	A375_MHC_IP_R1	1	525.2051391601562	2	524.8055	1047.59645	-0.47556	-0.00024958	0.1273	6.6807E-05	-0.34826	-0.00018277	524.805369621547	50.703	0.50659	50.703	50.459	50.966	0					16	9	2	0	0	0	0.8211	1	17995	17995		23.148	0	1	2286100	+		9425	19079	6668	6721	9218	9218					0.07455200137133033
EELLLRLY	8	Unmodified	_EELLLRLY_					0	0	0			REV__ENSG00000138246|ENST00000260818|DNAJC13	REV__ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	A375_MHC_IP_R2	2	524.6771850585938	2	524.8055	1047.59645	-0.74812	-0.00039262	1.0836	0.00056867	0.33547	0.00017605	525.3081883939578	49.857	1.7256	50.611	49.687	51.412	0.75406					21	16	2	0	0	0	0.90224	1	18792	18792		13.508	0	1	3498200	+		9426	19079	6668	6721	9219	9219					0.07455200137133033
EELLMYWY	8	Unmodified	_EELLMYWY_					0	0	0			REV__ENST00000486103.6_1_17:58031378-58035783:-|nuORF	REV__ENST00000486103.6_1_17:58031378-58035783:-|nuORF	MSMS	A375_MHC_IP_R1	1	573.68798828125	2	573.762443	1145.51033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.797	1	45.797	45.297	46.297	0								0	0	0	0.16876	1	16040	16040		20.871	2.7362	1		+		9427	22135	6669	6722	9220	9220					-0.05660127759870193
EELLMYWY	8	Unmodified	_EELLMYWY_					0	0	0			REV__ENST00000486103.6_1_17:58031378-58035783:-|nuORF	REV__ENST00000486103.6_1_17:58031378-58035783:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	573.7133178710938	2	573.762443	1145.51033	-0.32249	-0.00018503	-2.6786	-0.0015369	-3.0011	-0.0017219	574.2620227263044	45.231	0.40598	45.996	45.642	46.048	0.76519					11	7	2	0	0	0	0.77488	1	16889	16889		13.508	0.97634	1	561530	+		9428	22135	6669	6722	9221	9221					-0.05660127759870193
EELLPALK	8	Unmodified	_EELLPALK_					0	0	0		ENSG00000135476|ENST00000257934|ESPL1	ENSG00000135476|ENST00000257934|ESPL1	ENSG00000135476|ENST00000257934|ESPL1	MULTI-SECPEP	A375_MHC_IP_R2	2	457.1734924316406	2	456.773668	911.532783	-0.27007	-0.00012336	-0.34863	-0.00015925	-0.6187	-0.00028261	456.77340431783256	77.173	0.50821	77.916	77.707	78.216	0.74293					15	9	2	0	0	0	0.95423	1	29321	29321		18.135	0	1	1574900			9429	4690	6670	6723	9222	9222					0.07347839700037184
EELLPTLQT	9	Unmodified	_EELLPTLQT_					0	0	0		ENSG00000135842|ENST00000367511|NIBAN1	ENSG00000135842|ENST00000367511|NIBAN1	ENSG00000135842|ENST00000367511|NIBAN1	MULTI-SECPEP	A375_MHC_IP_R2	2	522.1452026367188	2	522.284597	1042.55464	-0.98348	-0.00051366	1.64	0.00085656	0.65656	0.00034291	522.7865810210841	59.326	0.35252	60.073	59.896	60.249	0.74714					12	6	3	0	0	0	0.58271	1	22475	22475		26.884	6.43	1	1396000			9430	4720	6671	6724	9223	9223					0.03506599657953302
EELLQTIKL	9	Unmodified	_EELLQTIKL_					0	0	0			REV__ENST00000505896.5_1_5:49695109-49707239:-|nuORF	REV__ENST00000505896.5_1_5:49695109-49707239:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	363.2847900390625	3	362.885018	1085.63323	-0.53352	-0.00019361	0.20298	7.3657E-05	-0.33055	-0.00011995	362.8849121181959	56.697	0.66128	57.447	57.051	57.712	0.75015					21	12	3	0	0	0	0.4261	1	21454	21454		22.658	0	1	3203200	+		9431	21004	6672	6725	9224	9224					0.09383451963026346
EELLRDSL	8	Unmodified	_EELLRDSL_					0	0	0		ME3|p.P241S|1|0.42|ENSG00000151376|chr11:86487425-86487425|G/A|missense_variant	ME3|p.P241S|1|0.42|ENSG00000151376|chr11:86487425-86487425|G/A|missense_variant	ME3|p.P241S|1|0.42|ENSG00000151376|chr11:86487425-86487425|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	487.4790344238281	2	487.761289	973.508025	-0.74926	-0.00036546	0.43716	0.00021323	-0.3121	-0.00015223	487.7612949371019	35.87	0.35723	36.633	36.384	36.741	0.76338					12	6	3	0	0	0	0.96266	1	12978	12978		7.2892	0	1	820790			9432	14366	6673	6726	9225	9225					0.02021159826665553
EELLTAYGY	9	Unmodified	_EELLTAYGY_					0	0	0		ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	MSMS	A375_MHC_IP_R1	1	529.6875610351562	2	529.755672	1057.49679	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.909	1	96.909	96.409	97.409	0								0	0	0	0.089973	1	35611	35611		44.407	14.182	1				9433	1170	6674	6727	9226	9226					-0.029656622674792743
EELLTAYGY	9	Unmodified	_EELLTAYGY_					0	0	0		ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	MULTI-MSMS	A375_MHC_IP_R2	2	529.7103881835938	2	529.755672	1057.49679	-0.57397	-0.00030407	1.1765	0.00062326	0.60253	0.00031919	529.7565460847061	96.15	0.66026	96.9	96.653	97.313	0.75044					16	12	2	0	0	0	0.03497	2	36549	36511;36549		70.716	34.671	1	1164200			9434	1170	6674	6727	9227;9228	9228					-0.029656622674792743
EELLTDNRY	9	Unmodified	_EELLTDNRY_					0	0	0		nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;SRP68|p.L315*|1|0.27|ENSG00000167881|chr17:76057437-76057437|A/-|frameshift_variant	nc|ENSG00000167881|Q9UHB9-2|SRP68	nc|ENSG00000167881|Q9UHB9-2|SRP68	MULTI-SECPEP	A375_MHC_IP_R1	1	576.1129150390625	2	576.78021	1151.54587	-0.23741	-0.00013693	0.011176	6.4464E-06	-0.22623	-0.00013049	576.7802177268001	46.504	0.80786	46.504	46.144	46.952	0					49	15	5	0	0	0	0.04038	1	16307	16307		85.642	16.537	1	46784000			9435	7233	6675	6728	9229	9229					-0.023843739785206708
EELLTDNRY	9	Unmodified	_EELLTDNRY_					0	0	0		nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;SRP68|p.L315*|1|0.27|ENSG00000167881|chr17:76057437-76057437|A/-|frameshift_variant	nc|ENSG00000167881|Q9UHB9-2|SRP68	nc|ENSG00000167881|Q9UHB9-2|SRP68	MULTI-SECPEP	A375_MHC_IP_R2	2	577.179443359375	2	576.78021	1151.54587	-0.14652	-8.4511E-05	-0.064801	-3.7376E-05	-0.21132	-0.00012189	576.7801339520909	45.765	0.85645	46.53	46.201	47.058	0.76518					51	16	4	0	0	0	0.087712	1	17070	17070		75.761	24.131	1	44860000			9436	7233	6675	6728	9230	9230					-0.023843739785206708
EELLTLRHVV	10	Unmodified	_EELLTLRHVV_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-3|PCNX2;nc|ENSG00000135749|A6NKB5-4|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MULTI-MSMS	A375_MHC_IP_R2	2	1209.8046875	1	1208.69975	1207.69247	0.2416	0.00029202	-0.62823	-0.00075934	-0.38663	-0.00046731	1209.6998902030593	120.07	0.2016	120.6	120.45	120.65	0.5321					5	3	2	0	0	0	0.70793	1	45722	45722		8.7454	0.83525	1	17818000			9437	4709	6676	6729	9231	9231					0.09693347977213307
EELLTLRHVV	10	Unmodified	_EELLTLRHVV_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-3|PCNX2;nc|ENSG00000135749|A6NKB5-4|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MULTI-MSMS	A375_MHC_IP_R2	2	1208.8018798828125	1	1208.69975	1207.69247	0.21639	0.00026156	-0.81222	-0.00098173	-0.59583	-0.00072018	1208.6961005998648	123.78	0.20267	124.11	123.99	124.19	0.32968					5	3	2	0	0	0	0.70793	1	47692	47692		8.7454	0.83525	1	8350900			9438	4709	6676	6729	9232	9232					0.09693347977213307
EELLTNARR	9	Unmodified	_EELLTNARR_					0	0	0			REV__CON__P07224	REV__CON__P07224	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2313842773438	2	551.304187	1100.59382	-0.57862	-0.000319	-0.029461	-1.6242E-05	-0.60808	-0.00033524	551.3041252697661	34.213	0.30198	34.213	34.052	34.353	0					8	5	2	0	0	0	0.62767	1	11210	11210		23.148	1.4018	1	1810400	+	+	9439	15857	6677	6730	9233	9233					0.04754744732167637
EELLTSTGF	9	Unmodified	_EELLTSTGF_					0	0	0		ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2	ENSG00000134759|ENST00000358232|ELP2	ENSG00000134759|ENST00000358232|ELP2	MULTI-MSMS	A375_MHC_IP_R1	1	499.1481628417969	2	498.747847	995.481142	-0.4522	-0.00022553	0.15501	7.7309E-05	-0.2972	-0.00014823	498.7480229067278	95.507	0.45325	95.507	95.364	95.817	0					12	8	2	0	0	0	0.27715	1	35130	35130		32.305	20.665	1	1308900			9440	4605	6678	6731	9234	9234					-0.016779487845269614
EELLTSTGF	9	Unmodified	_EELLTSTGF_					0	0	0		ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2	ENSG00000134759|ENST00000358232|ELP2	ENSG00000134759|ENST00000358232|ELP2	MULTI-MSMS	A375_MHC_IP_R2	2	499.1893310546875	2	498.747847	995.481142	-0.27509	-0.0001372	-0.82855	-0.00041324	-1.1036	-0.00055044	498.747558889949	94.837	0.35346	95.582	95.324	95.678	0.74473					10	6	2	0	0	0	0.27715	1	36027	36027		32.305	10.559	1	759840			9441	4605	6678	6731	9235	9235					-0.016779487845269614
EELMKLAKQF	10	Unmodified	_EELMKLAKQF_					0	0	0		ENSG00000143971|ENST00000272342|ETAA1;ETAA1|p.L456*|1|0.37|ENSG00000143971|chr2:67404048-67404048|T/-|frameshift_variant	ENSG00000143971|ENST00000272342|ETAA1	ENSG00000143971|ENST00000272342|ETAA1	MULTI-MSMS	A375_MHC_IP_R2	2	412.958740234375	3	412.893408	1235.65839	-0.076951	-3.1772E-05	-1.0197	-0.00042104	-1.0967	-0.00045281	412.89304945244555	32.972	0.45835	33.709	33.417	33.876	0.73691					12	8	2	0	0	0	0.60385	1	11797	11797		20.581	9.7814	1	4125600			9442	5453	6679	6732	9236	9236					0.04999183493964665
EELNAWRVRKK	11	Unmodified	_EELNAWRVRKK_					0	0	0			REV__YLPM1|p.D2103N|1|0.16|ENSG00000119596|chr14:74835277-74835277|G/A|missense_variant	REV__YLPM1|p.D2103N|1|0.16|ENSG00000119596|chr14:74835277-74835277|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	715.1177368164062	2	714.907142	1427.79973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.555	1	59.304	58.804	59.804	0.74894								0	0	0	0.16249	1	22154	22154		5.7319	0	1		+		9443	29008	6680	6733	9237	9237					0.10294317911439066
EELNDLIQRF	10	Unmodified	_EELNDLIQRF_					0	0	0		nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-3|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	MULTI-MSMS	A375_MHC_IP_R1	1	639.73193359375	2	638.830234	1275.64592	-0.63494	-0.00040562	0.29275	0.00018702	-0.34219	-0.0002186	638.8304237976967	103.63	0.71167	103.63	103.32	104.03	0					39	13	4	0	0	0	0.060376	1	38037	38037		72.968	43.886	1	7400400			9444	1678	6681	6734	9238	9238					0.019118633552807296
EELNDLIQRF	10	Unmodified	_EELNDLIQRF_					0	0	0		nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-3|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	MULTI-SECPEP	A375_MHC_IP_R2	2	639.2301635742188	2	638.830234	1275.64592	-0.75156	-0.00048012	0.048433	3.0941E-05	-0.70312	-0.00044918	638.830227130112	102.95	0.76234	103.71	103.33	104.09	0.76428					30	14	3	0	0	0	0.02701	1	38960	38960		139.78	112.56	1	9401500			9445	1678	6681	6734	9239	9239					0.019118633552807296
EELNKIWDP	9	Unmodified	_EELNKIWDP_					0	0	0			REV__nc|ENSG00000159082|O43426-4|SYNJ1	REV__nc|ENSG00000159082|O43426-4|SYNJ1	MULTI-SECPEP	A375_MHC_IP_R1	1	572.2478637695312	2	572.287671	1142.56079	-0.62677	-0.00035869	1.4728	0.00084286	0.84602	0.00048417	572.7901915671803	67.905	0.60678	67.905	67.348	67.955	0					15	11	2	0	0	0	0.71541	1	24499	24499		7.2892	0.56607	1	5945200	+		9446	20099	6682	6735	9240	9240					-0.004788821105421448
EELNNAIKY	9	Unmodified	_EELNNAIKY_					0	0	0		ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	547.6790771484375	2	547.279846	1092.54514	-0.1682	-9.2052E-05	-1.5707	-0.00085959	-1.7388	-0.00095164	547.279614958005	44.49	0.66285	44.49	44.165	44.827	0					30	12	3	0	0	0	0.0090323	1	15511	15511		99.799	55.941	1	4362500			9447	4114	6683	6736	9241	9241					0.002568313724395921
EELNYWKRRY	10	Unmodified	_EELNYWKRRY_					0	0	0		nc|ENSG00000078699|O43439-2|CBFA2T2;ENSG00000078699|ENST00000342704|CBFA2T2;nc|ENSG00000078699|O43439|CBFA2T2;nc|ENSG00000078699|O43439-4|CBFA2T2	nc|ENSG00000078699|O43439-2|CBFA2T2	nc|ENSG00000078699|O43439-2|CBFA2T2	MULTI-SECPEP	A375_MHC_IP_R1	1	485.66107177734375	3	486.249242	1455.7259	-0.14639	-7.1181E-05	-0.16084	-7.8208E-05	-0.30723	-0.00014939	486.24913070387055	35.174	0.30591	35.174	34.963	35.269	0					8	5	2	0	0	0	0.93406	1	11649	11649		6.1918	5.1783	1	2122300			9448	1680	6684	6737	9242	9242					0.016263497491308954
EELPGLDSQW	10	Unmodified	_EELPGLDSQW_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-SECPEP	A375_MHC_IP_R1	1	586.6981201171875	2	587.274761	1172.53497	-0.11269	-6.618E-05	0.52427	0.00030789	0.41159	0.00024171	587.2748939962594	110.35	0.7115	110.35	109.99	110.7	0					31	13	3	0	0	0	0.018275	1	40429	40429		110.67	62.926	1	5269300			9449	2365	6685	6738	9243	9243					-0.044397763528195355
EELPGLDSQW	10	Unmodified	_EELPGLDSQW_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-SECPEP	A375_MHC_IP_R2	2	587.6748657226562	2	587.274761	1172.53497	-0.44895	-0.00026365	-0.044209	-2.5963E-05	-0.49316	-0.00028962	587.274687660785	109.63	0.71104	110.38	110.08	110.79	0.74684					32	13	3	0	0	0	0.060993	1	41347	41347		82.529	30.9	1	6327900			9450	2365	6685	6738	9244	9244					-0.044397763528195355
EELPGQLKQF	10	Unmodified	_EELPGQLKQF_					0	0	0		ENST00000476321.5_1_1:110279982-110280760:-|nuORF;ENST00000488824.1_1_1:110279695-110282569:-|nuORF;ENSG00000134202|ENST00000361066|GSTM3	ENST00000476321.5_1_1:110279982-110280760:-|nuORF	ENST00000476321.5_1_1:110279982-110280760:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	595.2159423828125	2	594.816596	1187.61864	-0.51604	-0.00030695	0.41037	0.00024409	-0.10567	-6.2856E-05	594.8163907679138	65.667	0.61129	65.667	65.411	66.022	0					23	11	3	0	0	0	0.02507	1	23773	23773		90.135	57.349	1	3145300			9451	4555	6686	6739	9245	9245					0.0323337981487839
EELPGQLKQF	10	Unmodified	_EELPGQLKQF_					0	0	0		ENST00000476321.5_1_1:110279982-110280760:-|nuORF;ENST00000488824.1_1_1:110279695-110282569:-|nuORF;ENSG00000134202|ENST00000361066|GSTM3	ENST00000476321.5_1_1:110279982-110280760:-|nuORF	ENST00000476321.5_1_1:110279982-110280760:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	595.2158813476562	2	594.816596	1187.61864	-0.59091	-0.00035148	-0.2227	-0.00013247	-0.81361	-0.00048395	594.8163717473643	64.901	0.55722	65.639	65.41	65.968	0.73811					19	10	2	0	0	0	0.27758	1	24611	24611		61.602	35.334	1	3302200			9452	4555	6686	6739	9246	9246					0.0323337981487839
EELPHIHAF	9	Unmodified	_EELPHIHAF_					0	0	0		ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B;ENST00000567436.1_1_16:30204298-30204508:-|nuORF	ENSG00000183336|ENST00000330978|BOLA2	ENSG00000183336|ENST00000330978|BOLA2	MULTI-MSMS	A375_MHC_IP_R1	1	546.7260131835938	2	546.777274	1091.53999	-0.58992	-0.00032256	0.0066095	3.6139E-06	-0.58331	-0.00031894	546.7772280856849	58.948	1.0674	58.948	58.481	59.548	0					63	20	4	0	0	0	0.0057891	3	21157	21114;21157;21258		189.49	135.92	1	98588000			9453	7425	6687	6740	9247;9248;9249	9248					-0.002114276995371256
EELPHIHAF	9	Unmodified	_EELPHIHAF_					0	0	0		ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B;ENST00000567436.1_1_16:30204298-30204508:-|nuORF	ENSG00000183336|ENST00000330978|BOLA2	ENSG00000183336|ENST00000330978|BOLA2	MULTI-MSMS	A375_MHC_IP_R1	1	364.95361328125	3	364.853941	1091.53999	0.16169	5.8993E-05	0.018053	6.5866E-06	0.17974	6.5579E-05	364.85395381322917	58.912	2.2893	58.912	58.531	60.821	0					143	44	6	0	0	0	0.33325	1	21199	21199		19.257	10.512	1	233500000			9454	7425	6687	6740	9250	9250					-0.002114276995371256
EELPHIHAF	9	Unmodified	_EELPHIHAF_					0	0	0		ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B;ENST00000567436.1_1_16:30204298-30204508:-|nuORF	ENSG00000183336|ENST00000330978|BOLA2	ENSG00000183336|ENST00000330978|BOLA2	MULTI-MSMS	A375_MHC_IP_R2	2	365.2538757324219	3	364.853941	1091.53999	-0.2615	-9.5408E-05	0.082551	3.0119E-05	-0.17895	-6.5289E-05	364.85398984531525	58.056	1.7731	58.805	58.477	60.25	0.74894					108	34	5	0	0	0	0.14294	1	21901	21901		30.637	10.222	1	232910000			9455	7425	6687	6740	9251	9251					-0.002114276995371256
EELPHIHAF	9	Unmodified	_EELPHIHAF_					0	0	0		ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B;ENST00000567436.1_1_16:30204298-30204508:-|nuORF	ENSG00000183336|ENST00000330978|BOLA2	ENSG00000183336|ENST00000330978|BOLA2	MULTI-MSMS	A375_MHC_IP_R2	2	547.1766967773438	2	546.777274	1091.53999	-1.0636	-0.00058153	0.1727	9.4429E-05	-0.89086	-0.0004871	546.777299873824	58.056	1.1146	58.805	58.427	59.542	0.74895					67	21	5	0	0	0	0.0019454	2	22123	22075;22123		170.4	116.82	1	90008000			9456	7425	6687	6740	9252;9253	9253					-0.002114276995371256
EELPLGREL	9	Unmodified	_EELPLGREL_					0	0	0		nc|ENSG00000011478|Q9NXS2-3|QPCTL;ENSG00000011478|ENST00000012049|QPCTL	nc|ENSG00000011478|Q9NXS2-3|QPCTL	nc|ENSG00000011478|Q9NXS2-3|QPCTL	MULTI-SECPEP	A375_MHC_IP_R1	1	528.6900634765625	2	528.290214	1054.56587	-0.41934	-0.00022154	-0.5835	-0.00030826	-1.0028	-0.00052979	528.2899212287363	70.391	0.66467	70.391	70.185	70.85	0					21	12	3	0	0	0	0.30133	1	25593	25593		51.415	11.466	1	1694700			9457	1004	6688	6741	9254	9254					0.040774217520947786
EELPLGREL	9	Unmodified	_EELPLGREL_					0	0	0		nc|ENSG00000011478|Q9NXS2-3|QPCTL;ENSG00000011478|ENST00000012049|QPCTL	nc|ENSG00000011478|Q9NXS2-3|QPCTL	nc|ENSG00000011478|Q9NXS2-3|QPCTL	MULTI-SECPEP	A375_MHC_IP_R2	2	528.6206665039062	2	528.290214	1054.56587	-0.4393	-0.00023208	-0.25775	-0.00013617	-0.69705	-0.00036825	528.2899804262403	69.615	0.61156	70.349	70.081	70.693	0.73421					23	11	3	0	0	0	0.5212	1	26423	26423		32.786	0	1	2086900			9458	1004	6688	6741	9255	9255					0.040774217520947786
EELPPDGGYL	10	Unmodified	_EELPPDGGYL_					0	0	0			REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2	REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-MSMS	A375_MHC_IP_R1	1	545.6581420898438	2	545.258579	1088.50261	-0.33536	-0.00018286	-0.77344	-0.00042172	-1.1088	-0.00060458	545.2582620339783	71.687	1.1602	71.687	71.262	72.423	0					47	22	3	0	0	0	0.40101	2	26000	25979;26000		34.102	13.649	1	29019000	+		9459	17464	6689	6742	9256;9257	9257					-0.038105637558146555
EELPPDGGYL	10	Unmodified	_EELPPDGGYL_					0	0	0			REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2	REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-SECPEP	A375_MHC_IP_R1	1	545.71044921875	2	545.258579	1088.50261	-0.33536	-0.00018286	-0.77344	-0.00042172	-1.1088	-0.00060458	545.2582620339783	71.687	1.1602	71.687	71.262	72.423	0					47	22	3	0	0	0	0.76414	1	26208	26208		26.884	26.884	1	29019000	+		9460	17464	6689	6742	9258	9258					-0.038105637558146555
EELPPDGGYL	10	Unmodified	_EELPPDGGYL_					0	0	0			REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2	REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-MSMS	A375_MHC_IP_R2	2	546.2283325195312	2	545.258579	1088.50261	-0.91607	-0.0004995	-0.27525	-0.00015008	-1.1913	-0.00064958	545.2585575914483	70.967	0.96147	71.701	71.302	72.264	0.73421					50	18	4	0	0	0	0.30274	2	26925	26847;26925		39.957	16.809	1	33733000	+		9461	17464	6689	6742	9259;9260	9260					-0.038105637558146555
EELPVQGKL	9	Unmodified	_EELPVQGKL_					0	0	0		ENSG00000178257|ENST00000327157|PRM3	ENSG00000178257|ENST00000327157|PRM3	ENSG00000178257|ENST00000327157|PRM3	MULTI-SECPEP	A375_MHC_IP_R2	2	507.13580322265625	2	506.787307	1011.56006	-0.93592	-0.00047431	0.15923	8.0695E-05	-0.77669	-0.00039362	506.7873663942099	97.229	0.50873	97.985	97.67	98.178	0.75587					12	9	2	0	0	0	0.69504	1	36837	36837		12.532	0	1	1195100			9462	8150	6690	6743	9261	9261					0.05474323240423473
EELQAVQKI	9	Unmodified	_EELQAVQKI_					0	0	0		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-SECPEP	A375_MHC_IP_R2	2	529.1456298828125	2	529.298039	1056.58152	-0.36056	-0.00019084	-2.114	-0.0011189	-2.4746	-0.0013098	529.2975125010829	43.95	0.65543	44.719	44.329	44.985	0.76909					19	12	3	0	0	0	0.16676	1	16365	16365		49.933	17.628	1	2155500			9463	1276	6691	6744	9262	9262					0.0554970826913177
EELQDQEGW	9	Unmodified	_EELQDQEGW_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF;MYOF|p.A1785Pfs*8|1|0.41|ENSG00000138119|chr10:93323281-93323281|C/-|frameshift_variant	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	A375_MHC_IP_R1	1	567.6407470703125	2	567.240918	1132.46728	-0.45467	-0.00025791	0.48908	0.00027743	0.034414	1.9521E-05	567.240856143513	46.553	0.65638	46.553	46.295	46.952	0					36	12	4	0	0	0	0.13797	1	16313	16313		43.858	3.9086	1	16746000			9464	4961	6692	6745	9263	9263					-0.09365226283625816
EELQDQEGW	9	Unmodified	_EELQDQEGW_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF;MYOF|p.A1785Pfs*8|1|0.41|ENSG00000138119|chr10:93323281-93323281|C/-|frameshift_variant	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	A375_MHC_IP_R2	2	567.6404418945312	2	567.240918	1132.46728	-0.34351	-0.00019486	0.4789	0.00027165	0.13538	7.6795E-05	567.2407778325656	45.869	0.85712	46.634	46.353	47.21	0.76518					39	16	4	0	0	0	0.13797	2	17124	17100;17124		43.858	3.9086	1	15426000			9465	4961	6692	6745	9264;9265	9265					-0.09365226283625816
EELQFDLSL	9	Unmodified	_EELQFDLSL_					0	0	0		nc|ENSG00000159110|P48551-3|IFNAR2;nc|ENSG00000159110|P48551-2|IFNAR2;ENSG00000159110|ENST00000342136|IFNAR2	nc|ENSG00000159110|P48551-3|IFNAR2	nc|ENSG00000159110|P48551-3|IFNAR2	MSMS	A375_MHC_IP_R2	2	547.18212890625	2	547.274229	1092.53391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.402	1	49.159	48.659	49.659	0.75737								0	0	0	0.13805	1	18175	18175		30.225	1.738	1				9466	6349	6693	6746	9266	9266					-0.008659907217179352
EELQFDLSL	9	Unmodified	_EELQFDLSL_					0	0	0		nc|ENSG00000159110|P48551-3|IFNAR2;nc|ENSG00000159110|P48551-2|IFNAR2;ENSG00000159110|ENST00000342136|IFNAR2	nc|ENSG00000159110|P48551-3|IFNAR2	nc|ENSG00000159110|P48551-3|IFNAR2	MSMS	A375_MHC_IP_R2	2	547.2113647460938	2	547.274229	1092.53391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.453	1	49.21	48.71	49.71	0.75737								0	0	0	0.11948	1	18195	18195		36.044	7.5574	1				9467	6349	6693	6746	9267	9267					-0.008659907217179352
EELQGKHDVF	10	Unmodified	_EELQGKHDVF_					0	0	0		ENSG00000151320|ENST00000280979|AKAP6	ENSG00000151320|ENST00000280979|AKAP6	ENSG00000151320|ENST00000280979|AKAP6	MULTI-MSMS	A375_MHC_IP_R1	1	401.5997009277344	3	401.199777	1200.5775	-0.14149	-5.6764E-05	0.19152	7.6839E-05	0.050038	2.0075E-05	401.19983102947566	42.635	0.55613	42.635	42.386	42.942	0					26	10	3	0	0	0	0.48529	1	14776	14776		19.626	7.9946	1	6949500			9468	5894	6694	6747	9268	9268					-0.014763812245973895
EELQGKHDVF	10	Unmodified	_EELQGKHDVF_					0	0	0		ENSG00000151320|ENST00000280979|AKAP6	ENSG00000151320|ENST00000280979|AKAP6	ENSG00000151320|ENST00000280979|AKAP6	MULTI-MSMS	A375_MHC_IP_R2	2	401.599609375	3	401.199777	1200.5775	-0.033385	-1.3394E-05	-0.24235	-9.7229E-05	-0.27573	-0.00011062	401.1996751313654	41.836	0.51045	42.611	42.249	42.759	0.77451					23	9	3	0	0	0	0.63639	1	15515	15515		11.518	11.518	1	8109100			9469	5894	6694	6747	9269	9269					-0.014763812245973895
EELQKHTW	8	Unmodified	_EELQKHTW_					0	0	0		nc|ENSG00000138964|Q9HBI0-5|PARVG;ENST00000475485.6_1_22:44577677-44582522:+|nuORF;nc|ENSG00000138964|Q9HBI0-4|PARVG;ENST00000453888.7_1_22:44568882-44582522:+|nuORF	nc|ENSG00000138964|Q9HBI0-5|PARVG	nc|ENSG00000138964|Q9HBI0-5|PARVG	MULTI-MSMS	A375_MHC_IP_R2	2	357.4488830566406	3	357.513696	1069.51926	-0.52711	-0.00018845	-0.096158	-3.4378E-05	-0.62327	-0.00022283	357.5136297192326	19.964	1.9273	20.574	19.892	21.819	0.61029					111	37	4	0	0	0	0.77624	1	6646	6646		6.2058	0	1	19494000			9470	12104	6695	6748	9270	9270					-0.012720180792030078
EELQKIYKTY	10	Unmodified	_EELQKIYKTY_					0	0	0		nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-MSMS	A375_MHC_IP_R1	1	439.6373596191406	3	438.902849	1313.68672	-0.37957	-0.00016659	0.48946	0.00021482	0.10989	4.8229E-05	438.9029876794293	39.721	0.60948	39.721	39.491	40.1	0					29	11	4	0	0	0	0.056042	2	13582	13557;13582		57.204	42.366	1	27613000			9471	4667	6696	6749	9271;9272	9272					0.04242204674892491
EELQKIYKTY	10	Unmodified	_EELQKIYKTY_					0	0	0		nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-MSMS	A375_MHC_IP_R1	1	658.250732421875	2	657.850635	1313.68672	-0.74002	-0.00048682	0.27622	0.00018171	-0.4638	-0.00030511	657.8507784711508	39.719	0.40575	39.719	39.491	39.896	0					18	7	3	0	0	0	5.1504E-11	1	13597	13597		221.57	153.73	1	10639000			9472	4667	6696	6749	9273	9273					0.04242204674892491
EELQKIYKTY	10	Unmodified	_EELQKIYKTY_					0	0	0		nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-MSMS	A375_MHC_IP_R2	2	658.2500610351562	2	657.850635	1313.68672	-1.1332	-0.0007455	0.4669	0.00030715	-0.66633	-0.00043834	657.8508476491311	38.987	0.4607	39.761	39.504	39.965	0.77451					19	8	4	0	0	0	8.9111E-07	1	14382	14382		196.06	136.69	1	7446900			9473	4667	6696	6749	9274	9274					0.04242204674892491
EELQKIYKTY	10	Unmodified	_EELQKIYKTY_					0	0	0		nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-SECPEP	A375_MHC_IP_R2	2	439.30267333984375	3	438.902849	1313.68672	-0.52543	-0.00023061	0.35462	0.00015564	-0.17081	-7.4969E-05	438.90292612119885	38.982	0.56145	39.757	39.556	40.118	0.77451					29	10	4	0	0	0	0.66604	1	14351	14351		39.923	35.517	1	26796000			9474	4667	6696	6749	9275	9275					0.04242204674892491
EELQKRKY	8	Unmodified	_EELQKRKY_					0	0	0			REV__nc|ENSG00000141503|Q8N4C8-5|MINK1	REV__nc|ENSG00000141503|Q8N4C8-5|MINK1	MULTI-SECPEP	A375_MHC_IP_R2	2	547.6790771484375	2	547.303655	1092.59276	-0.5746	-0.00031448	-0.051411	-2.8138E-05	-0.62601	-0.00034262	547.8059192084426	43.851	0.25237	44.62	44.48	44.732	0.7691					9	4	3	0	0	0	0.85124	1	16316	16316		34.187	0	1	830450	+		9475	19273	6697	6750	9276	9276					0.050165303632638825
EELQLEKRMT	10	Oxidation (M)	_EELQLEKRM(Oxidation (M))T_		EELQLEKRM(1)T		EELQLEKRM(83)T	0	0	1			REV__nc|ENSG00000182606|Q9UPV9-2|TRAK1	REV__nc|ENSG00000182606|Q9UPV9-2|TRAK1	MULTI-MSMS	A375_MHC_IP_R2	2	647.2279052734375	2	646.829377	1291.6442	-0.75513	-0.00048844	-2.492	-0.0016119	-3.2471	-0.0021003	646.8281610021244	55.485	0.70944	56.236	55.933	56.642	0.75075					18	13	2	0	0	0	0.026732	1	20959	20959		82.529	14.691	1	3616900	+		9476	27396	6698	6751	9277	9277		489			0.010044862749964523
EELQLEKRMT	10	Oxidation (M)	_EELQLEKRM(Oxidation (M))T_					0	0	1			REV__nc|ENSG00000182606|Q9UPV9-2|TRAK1	REV__nc|ENSG00000182606|Q9UPV9-2|TRAK1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	646.829377	1291.6442	-0.26311	-0.00017018	-2.5719	-0.0016636	-2.835	-0.0018338	646.8278797008177	56.098	0.50608	56.098	55.891	56.397	0	-0.068982	-2.0565E-05	NaN	82.529	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4058500	+		9477	27396	6698	6751				489			0.010044862749964523
EELQLEKRMT	10	Oxidation (M)	_EELQLEKRM(Oxidation (M))T_					0	0	1			REV__nc|ENSG00000182606|Q9UPV9-2|TRAK1	REV__nc|ENSG00000182606|Q9UPV9-2|TRAK1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	646.829377	1291.6442	-0.75513	-0.00048844	-2.492	-0.0016119	-3.2471	-0.0021003	646.8281610021244	55.485	0.70944	56.236	55.933	56.642	0.75075	0.068982	8.2781E-05	NaN	82.529	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3616900	+		9478	27396	6698	6751				489			0.010044862749964523
EELQLNTKF	9	Unmodified	_EELQLNTKF_					0	0	0		ENSG00000109047|ENST00000226193|RCVRN	ENSG00000109047|ENST00000226193|RCVRN	ENSG00000109047|ENST00000226193|RCVRN	MULTI-MSMS	A375_MHC_IP_R2	2	375.2671203613281	3	374.532756	1120.57644	-0.021309	-7.9807E-06	-0.0089112	-3.3375E-06	-0.03022	-1.1318E-05	374.5326166363143	34.157	0.66171	34.909	34.6	35.262	0.75225					23	12	3	0	0	0	0.4867	1	12291	12291		14.405	2.8875	1	15034000			9479	2850	6699	6752	9278	9278					0.02097404406526948
EELQLNTKF	9	Unmodified	_EELQLNTKF_					0	0	0		ENSG00000109047|ENST00000226193|RCVRN	ENSG00000109047|ENST00000226193|RCVRN	ENSG00000109047|ENST00000226193|RCVRN	MULTI-MSMS	A375_MHC_IP_R2	2	561.695068359375	2	561.295496	1120.57644	-0.97049	-0.00054473	0.22531	0.00012647	-0.74518	-0.00041826	561.2951393306782	34.14	0.45779	34.892	34.702	35.16	0.75225					16	8	3	0	0	0	0.082375	1	12308	12308		53.833	4.2785	1	8670900			9480	2850	6699	6752	9279	9279					0.02097404406526948
EELQLNTKF	9	Unmodified	_EELQLNTKF_					0	0	0		ENSG00000109047|ENST00000226193|RCVRN	ENSG00000109047|ENST00000226193|RCVRN	ENSG00000109047|ENST00000226193|RCVRN	MULTI-MSMS	A375_MHC_IP_R2	2	561.9541625976562	2	561.295496	1120.57644	-0.79235	-0.00044474	-0.62379	-0.00035013	-1.4161	-0.00079487	561.2948797055931	66.03	0.4603	66.768	66.629	67.089	0.73812					13	8	2	0	0	0	0.53367	1	25094	25094		18.146	1.0335	1	1839600			9481	2850	6699	6752	9280	9280					0.02097404406526948
EELQPPERVP	10	Unmodified	_EELQPPERVP_					0	0	0			REV__ENSG00000152128|ENST00000281924|TMEM163	REV__ENSG00000152128|ENST00000281924|TMEM163	MULTI-MSMS	A375_MHC_IP_R2	2	398.96270751953125	3	398.543544	1192.6088	-0.40967	-0.00016327	0.26342	0.00010498	-0.14625	-5.8288E-05	398.5435281054939	23.149	0.50881	23.779	23.42	23.928	0.63014					14	9	2	0	0	0	0.60385	1	7369	7369		20.581	2.2078	1	2769500	+		9482	19793	6700	6753	9281	9281					0.020201918095153815
EELQQKVSY	9	Unmodified	_EELQQKVSY_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	A375_MHC_IP_R1	1	562.6849365234375	2	562.285128	1122.5557	-0.66577	-0.00037435	0.057172	3.2147E-05	-0.6086	-0.00034221	562.2850653186892	32.811	0.55491	32.811	32.585	33.14	0					24	10	3	0	0	0	0.00075692	1	10610	10610		197.81	108.85	1	37155000			9483	7325	6701	6754	9282	9282					-0.0006718597312556085
EELQQKVSY	9	Unmodified	_EELQQKVSY_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	A375_MHC_IP_R2	2	562.68505859375	2	562.285128	1122.5557	-0.58402	-0.00032839	0.18982	0.00010673	-0.3942	-0.00022165	562.2850870471224	32.151	0.96362	32.888	32.555	33.518	0.73692					33	18	3	0	0	0	0.0078574	1	11394	11394		168.54	79.584	1	32835000			9484	7325	6701	6754	9283	9283					-0.0006718597312556085
EELQRLKDRY	10	Unmodified	_EELQRLKDRY_					0	0	0		ENST00000478863.5_1_19:10666000-10676642:-|nuORF;ENSG00000129347|ENST00000312962|KRI1;ENST00000536689.5_1_19:10676323-10676648:-|nuORF	ENST00000478863.5_1_19:10666000-10676642:-|nuORF	ENST00000478863.5_1_19:10666000-10676642:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	450.9766540527344	3	450.577247	1348.70991	-0.71287	-0.0003212	-0.23914	-0.00010775	-0.95202	-0.00042896	450.5771215485885	25.05	0.25381	25.693	25.568	25.822	0.64368					8	4	2	0	0	0	0.33943	1	8363	8363		28.271	15.92	1	5097400			9485	4188	6702	6755	9284	9284					0.0495064351223391
EELQRRLQFEE	11	Unmodified	_EELQRRLQFEE_					0	0	0		ENSG00000126216|ENST00000261965|TUBGCP3;nc|ENSG00000126216|Q96CW5-2|TUBGCP3	ENSG00000126216|ENST00000261965|TUBGCP3	ENSG00000126216|ENST00000261965|TUBGCP3	MULTI-MSMS	A375_MHC_IP_R2	2	493.3189392089844	3	492.919562	1475.73686	-0.93485	-0.00046081	-0.25412	-0.00012526	-1.189	-0.00058607	492.9194006037779	25.05	0.45981	25.693	25.465	25.924	0.64368					14	8	2	0	0	0	0.71476	1	8369	8369		8.2864	2.7631	1	3863000			9486	4029	6703	6756	9285	9285					0.018017073327655453
EELQSSAELW	10	Unmodified	_EELQSSAELW_					0	0	0			REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF;REV__ENST00000475742.5_1_6:31654991-31656600:-|nuORF	REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	596.224853515625	2	596.280043	1190.54553	-0.24988	-0.000149	-0.48772	-0.00029081	-0.73759	-0.00043981	596.2803505910034	51.573	0.35493	51.573	51.373	51.728	0					12	6	3	0	0	0	0.70146	1	18332	18332		11.64	0.81637	1	1157900	+		9487	22514;25175	6704	6757	9286	9286					-0.04211793698368638
EELRAALKKH	10	Unmodified	_EELRAALKKH_					0	0	0			REV__ENSG00000077063|ENST00000160373|CTTNBP2	REV__ENSG00000077063|ENST00000160373|CTTNBP2	MULTI-MSMS	A375_MHC_IP_R2	2	1196.0997314453125	1	1194.69533	1193.68806	0.32321	0.00038614	-2.2257	-0.0026591	-1.9025	-0.0022729	1195.696372407626	117.12	0.25423	117.78	117.68	117.94	0.65962					6	4	2	0	0	0	0.70496	1	44324	44324		10.074	3.3508	1	5650300	+		9488	16686	6705	6758	9287	9287					0.09895883554304419
EELRAQMLI	9	Unmodified	_EELRAQMLI_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D;ENST00000585094.1_1_17:30986131-31048108:-|nuORF	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-SECPEP	A375_MHC_IP_R1	1	552.1985473632812	2	551.799891	1101.58523	-0.57544	-0.00031753	-1.7613	-0.00097189	-2.3367	-0.0012894	551.7984230603953	79.871	0.61568	79.871	79.47	80.086	0					18	11	3	0	0	0	0.55359	1	29178	29178		21.747	0	1	1776600			9489	8031	6706	6759	9288	9288					0.03850054771351097
EELRAQMLI	9	Unmodified	_EELRAQMLI_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D;ENST00000585094.1_1_17:30986131-31048108:-|nuORF	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	551.799891	1101.58523	-0.68471	-0.00037782	-2.801	-0.0015456	-3.4857	-0.0019234	551.7982476946967	79.144	0.45647	79.888	79.54	79.997	0.74474	0.0085734	-9.7375E-05	NaN	21.747	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2012100			9490	8031	6706	6759							0.03850054771351097
EELRAWYS	8	Unmodified	_EELRAWYS_					0	0	0		TBC1D5|p.N463Ifs*6|1|0.45|ENSG00000131374|chr3:17238363-17238363|T/-|frameshift_variant;nc|ENSG00000131374|Q92609|TBC1D5;ENSG00000131374|ENST00000696125|TBC1D5	TBC1D5|p.N463Ifs*6|1|0.45|ENSG00000131374|chr3:17238363-17238363|T/-|frameshift_variant	TBC1D5|p.N463Ifs*6|1|0.45|ENSG00000131374|chr3:17238363-17238363|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	527.6636962890625	2	527.253631	1052.49271	-0.53994	-0.00028468	0.53123	0.00028009	-0.0087092	-4.592E-06	527.2539314850275	61.064	0.25448	61.064	60.973	61.227	0					6	4	2	0	0	0	0.73111	1	22057	22057		25.399	0.72543	1	1304700			9491	4323	6707	6760	9289	9289					-0.03143706970558924
EELRDFHRRY	10	Unmodified	_EELRDFHRRY_					0	0	0		nc|ENSG00000043514|Q9H3H1-4|TRIT1;ENSG00000043514|ENST00000316891|TRIT1;ENST00000469476.2_1_1:40313418-40313755:-|nuORF;nc|ENSG00000043514|Q9H3H1-3|TRIT1;nc|ENSG00000043514|Q9H3H1-2|TRIT1;nc|ENSG00000043514|Q9H3H1-5|TRIT1	nc|ENSG00000043514|Q9H3H1-4|TRIT1	nc|ENSG00000043514|Q9H3H1-4|TRIT1	MULTI-SECPEP	A375_MHC_IP_R1	1	474.64056396484375	3	474.240858	1419.70075	-0.19721	-9.3524E-05	-0.30989	-0.00014696	-0.50709	-0.00024048	474.24067537837016	21.708	0.40621	21.708	21.505	21.911	0					17	7	3	0	0	0	0.81654	1	5748	5748		26.021	16.777	1	2371900			9492	1181	6708	6761	9290	9290					0.007682949465333877
EELRDFHRRY	10	Unmodified	_EELRDFHRRY_					0	0	0		nc|ENSG00000043514|Q9H3H1-4|TRIT1;ENSG00000043514|ENST00000316891|TRIT1;ENST00000469476.2_1_1:40313418-40313755:-|nuORF;nc|ENSG00000043514|Q9H3H1-3|TRIT1;nc|ENSG00000043514|Q9H3H1-2|TRIT1;nc|ENSG00000043514|Q9H3H1-5|TRIT1	nc|ENSG00000043514|Q9H3H1-4|TRIT1	nc|ENSG00000043514|Q9H3H1-4|TRIT1	MULTI-MSMS	A375_MHC_IP_R2	2	474.9745788574219	3	474.240858	1419.70075	-0.86941	-0.00041231	-0.36341	-0.00017234	-1.2328	-0.00058465	474.24074783677935	20.097	0.66011	20.707	20.399	21.059	0.61029					20	12	3	0	0	0	0.30332	1	6244	6244		39.923	23.085	1	2583600			9493	1181	6708	6761	9291	9291					0.007682949465333877
EELREQKY	8	Unmodified	_EELREQKY_					0	0	0			REV__ENSG00000167721|ENST00000301364|TSR1	REV__ENSG00000167721|ENST00000301364|TSR1	MULTI-MSMS	A375_MHC_IP_R2	2	547.6790771484375	2	547.77747	1093.54039	-0.69034	-0.00037815	0.80484	0.00044087	0.1145	6.272E-05	547.7781089817219	44.329	1.1116	45.098	44.228	45.34	0.76909					42	21	3	0	0	0	0.68907	1	16316	16316		38.151	4.0487	1	6498200	+		9494	20787	6709	6762	9292	9292					-0.0026405277033063612
EELRKSESF	9	Unmodified	_EELRKSESF_					0	0	0		ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	MULTI-MSMS	A375_MHC_IP_R1	1	563.2063598632812	2	562.782753	1123.55095	-0.48159	-0.00027103	0.23267	0.00013094	-0.24892	-0.00014009	562.7835548249018	23.202	0.30646	23.202	23.074	23.381	0					6	5	2	0	0	0	0.22528	1	6302	6302		36.127	14.59	1	4283000			9495	4337	6710	6763	9293	9293					-0.005880701158957891
EELRKSESF	9	Unmodified	_EELRKSESF_					0	0	0		ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	MULTI-SECPEP	A375_MHC_IP_R2	2	563.1824951171875	2	562.782753	1123.55095	-0.88012	-0.00049532	-0.63381	-0.0003567	-1.5139	-0.00085202	562.7820660684084	20.926	0.45626	21.536	21.21	21.666	0.61029					15	8	3	0	0	0	0.5212	1	6552	6552		20.415	7.3721	1	1926700			9496	4337	6710	6763	9294	9294					-0.005880701158957891
EELRMFHE	8	Unmodified	_EELRMFHE_					0	0	0		ENSG00000214842|ENST00000399080|RAD51AP2	ENSG00000214842|ENST00000399080|RAD51AP2	ENSG00000214842|ENST00000399080|RAD51AP2	MULTI-MSMS	A375_MHC_IP_R2	2	545.1643676757812	2	545.752941	1089.49133	-1.3397	-0.00073113	0.02724	1.4866E-05	-1.3124	-0.00071627	545.7527826171092	37.229	0.61074	38	37.716	38.327	0.7709					20	11	3	0	0	0	0.77123	1	13541	13541		14.582	0	1	4890200			9497	9628	6711	6764	9295	9295					-0.04983664330939064
EELRPSNAFA	10	Unmodified	_EELRPSNAFA_					0	0	0		ENSG00000130876|ENST00000253188|SLC7A10	ENSG00000130876|ENST00000253188|SLC7A10	ENSG00000130876|ENST00000253188|SLC7A10	MULTI-MSMS	A375_MHC_IP_R1	1	568.205322265625	2	567.28292	1132.55129	-0.43334	-0.00024582	-0.044517	-2.5254E-05	-0.47785	-0.00027108	567.2830315046624	41.99	2.1804	41.99	40.863	43.043	0					126	42	5	0	0	0	0.69306	1	14823	14823		13.906	0.86358	1	31046000			9498	4291	6712	6765	9296	9296					-0.009686503960438131
EELRQPADEGV	11	Unmodified	_EELRQPADEGV_					0	0	0			REV__FMN2|p.G379E|1|0.92|ENSG00000155816|chr1:240093245-240093245|G/A|missense_variant	REV__FMN2|p.G379E|1|0.92|ENSG00000155816|chr1:240093245-240093245|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	621.6539306640625	2	621.801674	1241.58879	-0.37167	-0.00023111	-0.17996	-0.0001119	-0.55163	-0.000343	621.8012004105759	55.88	0.86336	55.88	55.584	56.447	0					33	16	3	0	0	0	0.72949	1	19889	19889		9.3831	0	1	2923600	+		9499	26638	6713	6766	9297	9297					-0.022336039211268144
EELRQPPVK	9	Unmodified	_EELRQPPVK_					0	0	0		ENST00000560524.1_1_15:29526351-29527221:-|nuORF;nc|ENSG00000143164|Q58WW2|DCAF6;nc|ENSG00000143164|Q58WW2-2|DCAF6;nc|ENSG00000143164|Q58WW2-4|DCAF6;ENSG00000143164|ENST00000367840|DCAF6	ENST00000560524.1_1_15:29526351-29527221:-|nuORF	ENST00000560524.1_1_15:29526351-29527221:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	548.1585693359375	2	548.31148	1094.60841	-0.84742	-0.00046465	-0.14002	-7.6773E-05	-0.98743	-0.00054142	548.311451001087	26.077	0.55724	26.077	25.866	26.423	0					16	10	2	0	0	0	0.65246	1	7824	7824		15.847	0	1	5251500			9500	5353	6714	6767	9298	9298					0.06488816880323611
EELRRKWPVAW	11	Unmodified	_EELRRKWPVAW_					0	0	0		ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MSMS	A375_MHC_IP_R1	1	735.4024658203125	2	735.404235	1468.79392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.799	1	77.799	77.299	78.299	0								0	0	0	0.16263	1	28391	28391		10.074	1.3285	1				9501	9248	6715	6768	9299	9299					0.07827219399769092
EELRRLPPV	9	Unmodified	_EELRRLPPV_					0	0	0			REV__ENST00000587774.1_1_17:73872720-73874251:-|nuORF	REV__ENST00000587774.1_1_17:73872720-73874251:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	555.2268676757812	2	554.827298	1107.64004	-0.8783	-0.00048731	0.13336	7.399E-05	-0.74495	-0.00041332	554.8273419578004	26.296	0.40595	26.296	26.118	26.524	0					13	7	2	0	0	0	0.7911	1	7855	7855		11.64	6.4096	1	2941300	+		9502	18658	6716	6769	9300	9300					0.09052809634272307
EELRRQRYWLG	11	Unmodified	_EELRRQRYWLG_					0	0	0		ENST00000591348.5_1_1:16802327-16812083:-|nuORF;nc|ENSG00000290842|Q8IVE0|CROCCP3;ENST00000591316.1_1_1:16804748-16809819:-|nuORF	ENST00000591348.5_1_1:16802327-16812083:-|nuORF	ENST00000591348.5_1_1:16802327-16812083:-|nuORF	MSMS	A375_MHC_IP_R1	1	753.35986328125	2	753.402224	1504.78989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.33	1	139.33	138.83	139.83	0								0	0	0	0.16331	1	53557	53557		1.4819	0.51963	1				9503	13798	6717	6770	9301	9301					0.057691299060707024
EELRSLKEF	9	Unmodified	_EELRSLKEF_					0	0	0			REV__ENSG00000255690|ENST00000539664|TRIL	REV__ENSG00000255690|ENST00000539664|TRIL	MULTI-MSMS	A375_MHC_IP_R1	1	576.2089233398438	2	575.808771	1149.60299	-0.14245	-8.2022E-05	0.83761	0.0004823	0.69516	0.00040028	575.8092846803902	46.158	0.45411	46.158	45.941	46.395	0					12	8	2	0	0	0	0.56584	1	16215	16215		17.113	1.8644	1	2015400	+		9504	22879	6718	6771	9302	9302					0.03417093297844076
EELRSLKEF	9	Unmodified	_EELRSLKEF_					0	0	0			REV__ENSG00000255690|ENST00000539664|TRIL	REV__ENSG00000255690|ENST00000539664|TRIL	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	575.808771	1149.60299	-0.14245	-8.2022E-05	0.83761	0.0004823	0.69516	0.00040028	575.8092846803902	46.158	0.45411	46.158	45.941	46.395	0	0.016663	-0.00034189	NaN	17.113	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2015400	+		9505	22879	6718	6771							0.03417093297844076
EELRSLKEF	9	Unmodified	_EELRSLKEF_					0	0	0			REV__ENSG00000255690|ENST00000539664|TRIL	REV__ENSG00000255690|ENST00000539664|TRIL	MULTI-MATCH	A375_MHC_IP_R2	2		2	575.808771	1149.60299	-0.22822	-0.00013141	1.7852	0.0010279	1.557	0.00089653	575.8102140183418	45.359	0.65612	46.124	45.846	46.503	0.76519	-0.016663	0.00074937	NaN	17.113	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1855500	+		9506	22879	6718	6771							0.03417093297844076
EELRSPKLF	9	Unmodified	_EELRSPKLF_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	A375_MHC_IP_R1	1	373.9449768066406	3	373.544996	1117.61316	0.5286	0.00019746	0.4553	0.00017008	0.9839	0.00036753	373.5448500040981	53.96	0.86018	53.96	53.656	54.516	0					43	16	4	0	0	0	0.55471	1	19225	19225		12.175	5.9829	1	6914100			9507	5792	6719	6772	9303	9303					0.05905701023084475
EELRSPKLF	9	Unmodified	_EELRSPKLF_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-SECPEP	A375_MHC_IP_R1	1	560.2136840820312	2	559.813856	1117.61316	-0.46185	-0.00025855	-0.25621	-0.00014343	-0.71806	-0.00040198	559.8136786698607	63.606	0.66456	63.606	63.274	63.939	0					30	12	3	0	0	0	0.46045	1	22962	22962		29.082	0	1	6896400			9508	5792	6719	6772	9304	9304					0.05905701023084475
EELRSPKLF	9	Unmodified	_EELRSPKLF_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-SECPEP	A375_MHC_IP_R2	2	373.945068359375	3	373.544996	1117.61316	-0.19671	-7.3482E-05	0.65157	0.00024339	0.45485	0.00016991	373.54494336878173	53.173	0.76471	53.924	53.588	54.353	0.75105					39	14	4	0	0	0	0.67539	1	20032	20032		15.739	6.1946	1	7807800			9509	5792	6719	6772	9305	9305					0.05905701023084475
EELRSPKLF	9	Unmodified	_EELRSPKLF_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-SECPEP	A375_MHC_IP_R2	2	560.2135620117188	2	559.813856	1117.61316	-0.68306	-0.00038239	-0.19415	-0.00010869	-0.87721	-0.00049107	559.8137387645178	62.721	0.70852	63.463	63.079	63.788	0.74263					32	13	3	0	0	0	0.59098	1	23751	23751		21.537	0	1	8020600			9510	5792	6719	6772	9306	9306					0.05905701023084475
EELRSPKLFY	10	Unmodified	_EELRSPKLFY_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	A375_MHC_IP_R1	1	641.7451782226562	2	641.34552	1280.67649	-0.57527	-0.00036894	-0.32211	-0.00020658	-0.89737	-0.00057553	641.3455543055345	60.446	0.50898	60.446	60.109	60.618	0					23	9	3	0	0	0	0.021392	1	21731	21731		84.522	46.347	1	5336000			9511	5792	6720	6773	9307	9307					0.04737641740325671
EELRSPKLFY	10	Unmodified	_EELRSPKLFY_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-SECPEP	A375_MHC_IP_R1	1	428.2995300292969	3	427.899439	1280.67649	-0.13725	-5.8729E-05	0.092026	3.9378E-05	-0.045225	-1.9352E-05	427.89941250592506	60.437	0.81358	60.437	60.109	60.922	0					39	15	4	0	0	0	0.74263	1	21722	21722		27.088	11.35	1	15144000			9512	5792	6720	6773	9308	9308					0.04737641740325671
EELRSPKLFY	10	Unmodified	_EELRSPKLFY_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	A375_MHC_IP_R2	2	641.7444458007812	2	641.34552	1280.67649	-1.1149	-0.00071502	-0.10605	-6.8015E-05	-1.2209	-0.00078303	641.3454543555692	59.627	0.50566	60.375	60.047	60.553	0.74714					22	9	3	0	0	0	0.033253	1	22539	22539		80.676	44.549	1	5167200			9513	5792	6720	6773	9309	9309					0.04737641740325671
EELRSPKLFY	10	Unmodified	_EELRSPKLFY_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-SECPEP	A375_MHC_IP_R2	2	428.29931640625	3	427.899439	1280.67649	-0.57399	-0.00024561	0.051102	2.1867E-05	-0.52289	-0.00022374	427.89938207960046	59.626	0.7061	60.373	60.047	60.753	0.74714					40	13	4	0	0	0	0.23508	1	22532	22532		57.477	32.52	1	15413000			9514	5792	6720	6773	9310	9310					0.04737641740325671
EELRVLSLV	9	Unmodified	_EELRVLSLV_					0	0	0		TAOK2|p.P852L|1|0.32|ENSG00000149930|chr16:29986827-29986827|C/T|missense_variant	TAOK2|p.P852L|1|0.32|ENSG00000149930|chr16:29986827-29986827|C/T|missense_variant	TAOK2|p.P852L|1|0.32|ENSG00000149930|chr16:29986827-29986827|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	529.1177978515625	2	529.316232	1056.61791	-0.48432	-0.00025636	-1.9291	-0.0010211	-2.4134	-0.0012775	529.8160633215409	89.983	0.56194	90.714	90.442	91.004	0.7318					30	10	4	0	0	0	0.43707	1	34319	34319		15.847	0	1	5201600			9515	29294	6721	6774	9311	9311					0.09186585165844008
EELRVSKVF	9	Unmodified	_EELRVSKVF_					0	0	0		ENSG00000178567|ENST00000322716|EPM2AIP1	ENSG00000178567|ENST00000322716|EPM2AIP1	ENSG00000178567|ENST00000322716|EPM2AIP1	MULTI-SECPEP	A375_MHC_IP_R1	1	369.94512939453125	3	369.544996	1105.61316	0.44879	0.00016585	-0.15352	-5.6734E-05	0.29527	0.00010912	369.5449110753082	49.922	0.56233	49.922	49.642	50.204	0					27	10	3	0	0	0	0.61452	1	17653	17653		14.957	0	1	6360500			9516	8165	6722	6775	9312	9312					0.06457701023077789
EELRVSKVF	9	Unmodified	_EELRVSKVF_					0	0	0		ENSG00000178567|ENST00000322716|EPM2AIP1	ENSG00000178567|ENST00000322716|EPM2AIP1	ENSG00000178567|ENST00000322716|EPM2AIP1	MULTI-SECPEP	A375_MHC_IP_R1	1	554.2130737304688	2	553.813856	1105.61316	-0.40749	-0.00022567	-0.29408	-0.00016286	-0.70156	-0.00038854	553.8136249362992	49.995	0.56258	49.995	49.692	50.254	0					19	10	3	0	0	0	0.37663	1	17696	17696		43.772	23.358	1	2409900			9517	8165	6722	6775	9313	9313					0.06457701023077789
EELRVSKVF	9	Unmodified	_EELRVSKVF_					0	0	0		ENSG00000178567|ENST00000322716|EPM2AIP1	ENSG00000178567|ENST00000322716|EPM2AIP1	ENSG00000178567|ENST00000322716|EPM2AIP1	MULTI-SECPEP	A375_MHC_IP_R2	2	369.9450378417969	3	369.544996	1105.61316	0.11383	4.2064E-05	0.16321	6.0315E-05	0.27704	0.00010238	369.5450079113692	49.034	0.86274	49.791	49.485	50.348	0.75737					31	16	3	0	0	0	0.59098	1	18397	18397		15.739	0	1	6427800			9518	8165	6722	6775	9314	9314					0.06457701023077789
EELRVSKVF	9	Unmodified	_EELRVSKVF_					0	0	0		ENSG00000178567|ENST00000322716|EPM2AIP1	ENSG00000178567|ENST00000322716|EPM2AIP1	ENSG00000178567|ENST00000322716|EPM2AIP1	MULTI-SECPEP	A375_MHC_IP_R2	2	554.21337890625	2	553.813856	1105.61316	-0.9504	-0.00052634	0.12613	6.9854E-05	-0.82426	-0.00045649	553.8139327284935	49.089	0.50937	49.846	49.536	50.046	0.75736					14	9	2	0	0	0	0.16595	1	18440	18440		61.602	37.581	1	2069000			9519	8165	6722	6775	9315	9315					0.06457701023077789
EELRVSWL	8	Unmodified	_EELRVSWL_					0	0	0		ENST00000552197.5_1_12:46598354-46599882:-|nuORF	ENST00000552197.5_1_12:46598354-46599882:-|nuORF	ENST00000552197.5_1_12:46598354-46599882:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	516.1793823242188	2	516.279649	1030.54475	-0.29624	-0.00015295	0.24857	0.00012833	-0.047678	-2.4615E-05	516.2798508720774	45.544	0.91107	45.544	45.132	46.043	0					32	17	3	0	0	0	0.7479	1	15865	15865		20.871	2.7362	1	8684100			9520	13387	6723	6776	9316	9316					0.030694564432451443
EELSDAMHGTY	11	Unmodified	_EELSDAMHGTY_					0	0	0		ENSG00000179399|ENST00000377067|GPC5	ENSG00000179399|ENST00000377067|GPC5	ENSG00000179399|ENST00000377067|GPC5	MULTI-MSMS	A375_MHC_IP_R2	2	627.6834716796875	2	626.76116	1251.50777	-0.75011	-0.00047014	-1.7102	-0.0010719	-2.4603	-0.001542	626.7596445671801	88.277	0.86155	89.009	88.418	89.279	0.7318					32	16	3	0	0	0	0.72565	1	33558	33558		13.042	2.9685	1	4998300			9521	8228	6724	6777	9317	9317					-0.10792627955493117
EELSDAMHGTY	11	Unmodified	_EELSDAMHGTY_					0	0	0		ENSG00000179399|ENST00000377067|GPC5	ENSG00000179399|ENST00000377067|GPC5	ENSG00000179399|ENST00000377067|GPC5	MULTI-MATCH	A375_MHC_IP_R1	1		2	626.76116	1251.50777	-0.45321	-0.00028406	-1.4745	-0.00092418	-1.9277	-0.0012082	626.7601149884953	88.867	0.76153	88.867	88.409	89.171	0	-0.071008	9.1974E-05	NaN	13.042	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4157200			9522	8228	6724	6777							-0.10792627955493117
EELSPTAKF	9	Unmodified	_EELSPTAKF_					0	0	0		ENSG00000067082|ENST00000497571|KLF6;ENST00000173785.4_1_10:3822358-3824199:-|nuORF;nc|ENSG00000067082|Q99612-3|KLF6;nc|ENSG00000067082|Q99612-2|KLF6	ENSG00000067082|ENST00000497571|KLF6	ENSG00000067082|ENST00000497571|KLF6	MULTI-SECPEP	A375_MHC_IP_R1	1	511.66339111328125	2	511.263665	1020.51278	-0.40973	-0.00020948	-0.031691	-1.6202E-05	-0.44142	-0.00022568	511.2635452969318	47.446	0.7587	47.446	47.211	47.97	0					26	14	3	0	0	0	0.036758	1	16697	16697		89.401	17.478	1	13444000			9523	1427	6725	6778	9318	9318					0.0033404396941705272
EELSPTAKF	9	Unmodified	_EELSPTAKF_					0	0	0		ENSG00000067082|ENST00000497571|KLF6;ENST00000173785.4_1_10:3822358-3824199:-|nuORF;nc|ENSG00000067082|Q99612-3|KLF6;nc|ENSG00000067082|Q99612-2|KLF6	ENSG00000067082|ENST00000497571|KLF6	ENSG00000067082|ENST00000497571|KLF6	MULTI-SECPEP	A375_MHC_IP_R2	2	511.6631164550781	2	511.263665	1020.51278	-0.57576	-0.00029437	0.13282	6.7906E-05	-0.44294	-0.00022646	511.2636186147944	46.791	0.71227	47.552	47.206	47.919	0.76127					30	13	3	0	0	0	0.046478	1	17488	17488		82.529	23.85	1	12890000			9524	1427	6725	6778	9319	9319					0.0033404396941705272
EELSSRPPFWS	11	Unmodified	_EELSSRPPFWS_					0	0	0			REV__nc|ENSG00000100242|Q9UH99-3|SUN2	REV__nc|ENSG00000100242|Q9UH99-3|SUN2	MSMS	A375_MHC_IP_R2	2	667.8751831054688	2	667.822409	1333.63027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.48	1	78.223	77.723	78.723	0.74293								0	0	0	0.16265	1	29422	29422		4.897	0	1		+		9525	17064	6726	6779	9320	9320					-0.023204231617683035
EELSYKDN	8	Unmodified	_EELSYKDN_					0	0	0			REV__tr|U7SN90|U7SN90_FUSNUKnr4/Smi1-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01753PE=4SV=1	REV__tr|U7SN90|U7SN90_FUSNUKnr4/Smi1-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01753PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	499.17913818359375	2	499.227279	996.440005	-0.56515	-0.00028214	0.19712	9.8407E-05	-0.36803	-0.00018373	499.2273267180554	66.267	1.0182	66.267	65.972	66.99	0					28	19	2	0	0	0	0.7338	1	24009	24009		24.674	2.9272	1	3069400	+		9526	28315	6727	6780	9321	9321					-0.058357098240094274
EELSYKDN	8	Unmodified	_EELSYKDN_					0	0	0			REV__tr|U7SN90|U7SN90_FUSNUKnr4/Smi1-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01753PE=4SV=1	REV__tr|U7SN90|U7SN90_FUSNUKnr4/Smi1-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01753PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	499.62689208984375	2	499.227279	996.440005	-0.71234	-0.00035562	-0.12887	-6.4333E-05	-0.84121	-0.00041995	499.2272409134385	65.634	0.61035	66.372	66.018	66.629	0.73811					25	11	3	0	0	0	0.72008	1	24848	24848		28.487	3.0875	1	2514400	+		9527	28315	6727	6780	9322	9322					-0.058357098240094274
EELSYKDN	8	Unmodified	_EELSYKDN_					0	0	0			REV__tr|U7SN90|U7SN90_FUSNUKnr4/Smi1-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01753PE=4SV=1	REV__tr|U7SN90|U7SN90_FUSNUKnr4/Smi1-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01753PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	499.227279	996.440005	-0.56515	-0.00028214	0.19712	9.8407E-05	-0.36803	-0.00018373	499.2273267180554	66.267	1.0182	66.267	65.972	66.99	0	-0.052528	0.00016533	NaN	28.487	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3069400	+		9528	28315	6727	6780							-0.058357098240094274
EELTDDSEDDD	11	Unmodified	_EELTDDSEDDD_					0	0	0			REV__ENSG00000113583|ENST00000231512|C5orf15	REV__ENSG00000113583|ENST00000231512|C5orf15	MSMS	A375_MHC_IP_R2	2	641.71337890625	2	641.725691	1281.43683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.889	1	41.663	41.163	42.163	0.77451								0	0	0	0.16191	1	15156	15156		8.7454	0	1		+		9529	17790	6728	6781	9323	9323					-0.19263094249981805
EELTDTFYY	9	Unmodified	_EELTDTFYY_					0	0	0		ENSG00000130775|ENST00000373921|THEMIS2;nc|ENSG00000130775|Q5TEJ8-6|THEMIS2;nc|ENSG00000130775|Q5TEJ8-3|THEMIS2;nc|ENSG00000130775|Q5TEJ8-5|THEMIS2	ENSG00000130775|ENST00000373921|THEMIS2	ENSG00000130775|ENST00000373921|THEMIS2	MSMS	A375_MHC_IP_R2	2	590.69775390625	2	590.755869	1179.49719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.408	1	45.177	44.677	45.677	0.7691								0	0	0	0.1521	1	16572	16572		18.135	1.0221	1				9530	4281	6729	6782	9324	9324					-0.08538287338274131
EELTDYKKL	9	Unmodified	_EELTDYKKL_					0	0	0		tr|U7STY8|U7STY8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01035PE=4SV=1	tr|U7STY8|U7STY8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01035PE=4SV=1	tr|U7STY8|U7STY8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01035PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	380.6043395996094	3	380.204528	1137.59175	0.026653	1.0134E-05	-0.22961	-8.73E-05	-0.20296	-7.7166E-05	380.20435089066984	26.088	0.70889	26.088	25.866	26.575	0					32	13	3	0	0	0	0.69317	1	7729	7729		7.609	0.50723	1	16671000			9531	29728	6730	6783	9325	9325					0.028462712037253368
EELTHATVTTW	11	Unmodified	_EELTHATVTTW_					0	0	0			REV__nc|ENSG00000157833|Q75VX8-2|GAREM2	REV__nc|ENSG00000157833|Q75VX8-2|GAREM2	MULTI-MSMS	A375_MHC_IP_R2	2	644.7141723632812	2	644.314417	1286.61428	-1.0457	-0.00067379	1.474	0.00094975	0.4283	0.00027596	644.8166059342366	59.979	0.5563	60.726	60.349	60.906	0.74714					17	10	2	0	0	0	0.62292	1	22709	22709		21.537	0	1	2633400	+		9532	20047	6731	6784	9326	9326					-0.017561293986773308
EELTHPMT	8	Unmodified	_EELTHPMT_					0	0	0			REV__nc|ENSG00000176225|Q86VV8-4|RTTN	REV__nc|ENSG00000176225|Q86VV8-4|RTTN	MSMS	A375_MHC_IP_R2	2	479.132080078125	2	479.220943	956.427332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.408	1	68.144	67.644	68.644	0.73631								0	0	0	0.16876	1	25538	25538		14.582	0	1		+		9533	27373	6732	6785	9327	9327					-0.05262444487891571
EELTHYTAY	9	Unmodified	_EELTHYTAY_					0	0	0			REV__ENSG00000091704|ENST00000011292|CPA1	REV__ENSG00000091704|ENST00000011292|CPA1	MSMS	A375_MHC_IP_R2	2	563.665283203125	2	563.756204	1125.49785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.153	1	66.891	66.391	67.391	0.73811								0	0	0	0.15486	1	25073	25073		13.508	1.8676	1		+		9534	16956	6733	6786	9328	9328					-0.05987447898587561
EELTIDHVP	9	Unmodified	_EELTIDHVP_					0	0	0		ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1	ENSG00000134452|ENST00000362091|FBH1	ENSG00000134452|ENST00000362091|FBH1	MULTI-SECPEP	A375_MHC_IP_R1	1	527.1665649414062	2	526.766571	1051.51859	-0.025258	-1.3305E-05	0.6937	0.00036542	0.66845	0.00035212	526.7663903593022	69.68	0.55584	69.68	69.427	69.983	0					14	10	2	0	0	0	0.55359	1	25315	25315		21.747	0	1	1543400			9535	4577	6734	6787	9329	9329					-0.005108575189069597
EELTIDHVP	9	Unmodified	_EELTIDHVP_					0	0	0		ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1	ENSG00000134452|ENST00000362091|FBH1	ENSG00000134452|ENST00000362091|FBH1	MULTI-MATCH	A375_MHC_IP_R2	2		2	526.766571	1051.51859	-0.35158	-0.0001852	0.34027	0.00017924	-0.01131	-5.9576E-06	526.766166250785	68.916	0.45688	69.651	69.423	69.88	0.73511	-0.014694	-0.00029212	NaN	21.747	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1799600			9536	4577	6734	6787							-0.005108575189069597
EELTKLKKDFC	11	Unmodified	_EELTKLKKDFC_					0	0	0			REV__nc|ENSG00000176994|Q8TEV9-2|SMCR8	REV__nc|ENSG00000176994|Q8TEV9-2|SMCR8	MSMS	A375_MHC_IP_R1	1	677.6349487304688	2	677.35777	1352.70099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.008	1	91.008	90.508	91.508	0								0	0	0	0.16108	1	33440	33440		13.042	0	1		+		9537	21435	6735	6788	9330	9330					0.03874533831549343
EELTLEGIKQF	11	Unmodified	_EELTLEGIKQF_					0	0	0		EIF4A2|p.F391Lfs*14|1|0.08|ENSG00000156976|chr3:186789217-186789218|TC/-|frameshift_variant;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000485101.5_1_3:186504293-186504446:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF	EIF4A2|p.F391Lfs*14|1|0.08|ENSG00000156976|chr3:186789217-186789218|TC/-|frameshift_variant	EIF4A2|p.F391Lfs*14|1|0.08|ENSG00000156976|chr3:186789217-186789218|TC/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	653.8937377929688	2	653.848093	1305.68163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.526	1	91.526	91.026	92.026	0								0	0	0	0.094172	1	33627	33627		37.075	21.826	1				9538	832	6736	6789	9331	9331					0.04101900812270287
EELTLEGIKQF	11	Unmodified	_EELTLEGIKQF_					0	0	0		EIF4A2|p.F391Lfs*14|1|0.08|ENSG00000156976|chr3:186789217-186789218|TC/-|frameshift_variant;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000485101.5_1_3:186504293-186504446:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF	EIF4A2|p.F391Lfs*14|1|0.08|ENSG00000156976|chr3:186789217-186789218|TC/-|frameshift_variant	EIF4A2|p.F391Lfs*14|1|0.08|ENSG00000156976|chr3:186789217-186789218|TC/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	653.934326171875	2	653.848093	1305.68163	-0.7214	-0.00047168	-2.1526	-0.0014075	-2.874	-0.0018792	654.3468682137586	90.857	0.40504	91.591	91.362	91.767	0.7345					16	7	3	0	0	0	0.52146	1	34616	34616		29.437	20.461	1	2888800			9539	832	6736	6789	9332	9332					0.04101900812270287
EELTLEGIRQF	11	Unmodified	_EELTLEGIRQF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-SECPEP	A375_MHC_IP_R1	1	668.2493896484375	2	667.851167	1333.68778	-0.44791	-0.00029914	0.43859	0.00029291	-0.0093158	-6.2216E-06	667.8513882664166	93.29	0.71358	93.29	92.973	93.686	0					35	13	4	0	0	0	0.00058899	1	34243	34243		200.32	103.95	1	18067000			9540	6498;13685	6737	6790	9333	9333					0.034284190437801954
EELTLEGIRQF	11	Unmodified	_EELTLEGIRQF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	A375_MHC_IP_R2	2	668.4212646484375	2	667.851167	1333.68778	-0.71727	-0.00047903	0.31286	0.00020894	-0.40441	-0.00027008	667.8512407768819	92.676	1.0661	93.415	93.038	94.104	0.73902					48	20	4	0	0	0	0.72934	1	35424	35424		15.739	3.5639	1	16749000			9541	6498;13685	6737	6790	9334	9334					0.034284190437801954
EELTLRKAY	9	Unmodified	_EELTLRKAY_					0	0	0			REV__nc|ENSG00000198585|Q96DE0-3|NUDT16	REV__nc|ENSG00000198585|Q96DE0-3|NUDT16	MULTI-SECPEP	A375_MHC_IP_R2	2	562.2108154296875	2	561.811313	1121.60807	-0.63912	-0.00035906	-0.13737	-7.7174E-05	-0.77648	-0.00043624	561.811211889436	32.633	0.30585	33.37	33.162	33.468	0.73691					9	5	2	0	0	0	0.50484	1	11675	11675		24.021	0	1	3528400	+		9542	22385	6738	6791	9335	9335					0.05213397160468958
EELTYDYKF	9	Unmodified	_EELTYDYKF_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B;nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;ENST00000525408.1_1_11:118390286-118392884:+|nuORF	ENSG00000272333|ENST00000420124|KMT2B;nc|ENSG00000118058|Q03164-2|KMT2A	ENSG00000272333|ENST00000420124|KMT2B	MULTI-MSMS	A375_MHC_IP_R1	1	604.679931640625	2	604.279512	1206.54447	-0.29652	-0.00017918	1.2466	0.00075329	0.95007	0.00057411	604.2801155783013	70.662	0.56294	70.662	70.494	71.057	0					15	10	3	0	0	0	0.094655	1	25699	25699		51.63	0	1	1371300			9543	9990;3522	6739	6792	9336	9336					-0.05054008067304494
EELTYDYKF	9	Unmodified	_EELTYDYKF_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B;nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;ENST00000525408.1_1_11:118390286-118392884:+|nuORF	ENSG00000272333|ENST00000420124|KMT2B;nc|ENSG00000118058|Q03164-2|KMT2A	ENSG00000272333|ENST00000420124|KMT2B	MULTI-SECPEP	A375_MHC_IP_R2	2	604.707763671875	2	604.279512	1206.54447	-0.38567	-0.00023305	1.0806	0.00065297	0.6949	0.00041992	604.2799694740761	70.186	0.45672	70.92	70.642	71.099	0.73421					11	8	2	0	0	0	0.75782	1	26662	26662		15.248	0	1	1177000			9544	9990;3522	6739	6792	9337	9337					-0.05054008067304494
EELTYLGPVE	10	Unmodified	_EELTYLGPVE_					0	0	0			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-SECPEP	A375_MHC_IP_R2	2	575.1622314453125	2	575.287337	1148.56012	-0.12278	-7.0637E-05	0.70356	0.00040475	0.58078	0.00033411	575.7871114095556	92.706	0.55597	93.445	93.19	93.746	0.73901					13	10	2	0	0	0	0.8125	1	35289	35289		13.042	0	1	2503800	+		9545	22015	6740	6793	9338	9338					-0.008217215502327235
EELVMDEEAY	10	Unmodified	_EELVMDEEAY_					0	0	0		ENSG00000105447|ENST00000253237|GRWD1;ENST00000599949.1_1_19:48949262-48949505:+|nuORF	ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	MSMS	A375_MHC_IP_R1	1	614.2052612304688	2	614.257919	1226.50128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.904	1	42.904	42.404	43.404	0								0	0	0	0.15332	1	14888	14888		10.074	3.3508	1				9546	2608	6741	6794	9339	9339					-0.10290565906871052
EELVSIDTEE	10	Unmodified	_EELVSIDTEE_					0	0	0			REV__ENST00000394434.6_1_5:145523903-145524189:-|nuORF	REV__ENST00000394434.6_1_5:145523903-145524189:-|nuORF	MSMS	A375_MHC_IP_R2	2	582.3123779296875	2	582.269341	1162.52413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.452	1	86.188	85.688	86.688	0.73601								0	0	0	0.14862	1	32487	32487		20.454	0	1		+		9547	24308	6742	6795	9340	9340					-0.050632235177545226
EELVYETVIKW	11	Unmodified	_EELVYETVIKW_					0	0	0		ENST00000471654.1_1_2:23914526-23929531:+|nuORF;nc|ENSG00000119771|Q96CT2-2|KLHL29;ENSG00000119771|ENST00000486442|KLHL29	ENST00000471654.1_1_2:23914526-23929531:+|nuORF	ENST00000471654.1_1_2:23914526-23929531:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	470.6501770019531	3	470.250137	1407.72858	-0.78987	-0.00037143	0.47534	0.00022353	-0.31453	-0.00014791	470.584634789817	50.226	0.50663	50.98	50.753	51.26	0.75406					16	9	2	0	0	0	0.73472	1	18882	18882		4.4062	0.56024	1	4342000			9548	3620	6743	6796	9341	9341					0.04102760363412017
EELVYETVIKW	11	Unmodified	_EELVYETVIKW_					0	0	0		ENST00000471654.1_1_2:23914526-23929531:+|nuORF;nc|ENSG00000119771|Q96CT2-2|KLHL29;ENSG00000119771|ENST00000486442|KLHL29	ENST00000471654.1_1_2:23914526-23929531:+|nuORF	ENST00000471654.1_1_2:23914526-23929531:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	470.250137	1407.72858	-0.31913	-0.00015007	0.5352	0.00025168	0.21606	0.0001016	470.25041085690725	50.918	0.81152	50.918	50.561	51.373	0	-0.031231	4.2264E-05	NaN	4.4062	24	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3244800			9549	3620	6743	6796							0.04102760363412017
EELWGPAASPD	11	Unmodified	_EELWGPAASPD_					0	0	0		ENSG00000167685|ENST00000337080|ZNF444;nc|ENSG00000167685|Q8N0Y2-2|ZNF444	ENSG00000167685|ENST00000337080|ZNF444	ENSG00000167685|ENST00000337080|ZNF444	MSMS	A375_MHC_IP_R2	2	586.2400512695312	2	586.266936	1170.51932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.371	1	63.113	62.613	63.613	0.74263								0	0	0	0.14837	1	23641	23641		21.537	3.3906	1				9550	7211	6744	6797	9342	9342					-0.05912062869856527
EELWPRMRMRE	11	Unmodified	_EELWPRMRMRE_					0	0	0			REV__ENST00000512020.5_1_4:185339662-185350218:-|nuORF	REV__ENST00000512020.5_1_4:185339662-185350218:-|nuORF	MSMS	A375_MHC_IP_R1	1	511.66339111328125	3	511.586872	1531.73879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.46	1	47.46	46.96	47.96	0								0	0	0	0.16216	1	16697	16697		7.4771	2.4295	1		+		9551	20843	6745	6798	9343	9343					-0.0058127845466060535
EELWPRMRMRE	11	Unmodified	_EELWPRMRMRE_					0	0	0			REV__ENST00000512020.5_1_4:185339662-185350218:-|nuORF	REV__ENST00000512020.5_1_4:185339662-185350218:-|nuORF	MSMS	A375_MHC_IP_R2	2	511.6631164550781	3	511.586872	1531.73879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.685	1	47.446	46.946	47.946	0.76128								0	0	0	0.16216	1	17488	17488		7.4771	2.4295	1		+		9552	20843	6745	6798	9344	9344					-0.0058127845466060535
EELWVLDKN	9	Unmodified	_EELWVLDKN_					0	0	0			REV__ENST00000528037.1_1_11:61891511-61905356:+|nuORF	REV__ENST00000528037.1_1_11:61891511-61905356:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	573.6954345703125	2	573.295496	1144.57644	-0.32245	-0.00018486	0.85763	0.00049168	0.53519	0.00030682	573.2957901061782	44.628	0.457	45.397	45.086	45.543	0.7691					13	8	2	0	0	0	0.74875	1	16696	16696		10.824	2.9138	1	2354800	+		9553	19684	6746	6799	9345	9345					0.009934044064948466
EELYCSTSSA	10	Unmodified	_EELYCSTSSA_					0	0	0			REV__nc|ENSG00000140465|P04798-2|CYP1A1	REV__nc|ENSG00000140465|P04798-2|CYP1A1	MULTI-MSMS	A375_MHC_IP_R1	1	546.1254272460938	2	545.223879	1088.43321	-0.31812	-0.00017345	0.7455	0.00040646	0.42738	0.00023302	545.2242997810372	71.9	0.65462	71.9	71.565	72.22	0					30	12	4	0	0	0	0.6806	3	26116	26116;26200;26208		14.838	4.0143	1	10873000	+		9554	19214	6747	6800	9346;9347;9348	9346					-0.10747390766846365
EELYCSTSSA	10	Unmodified	_EELYCSTSSA_					0	0	0			REV__nc|ENSG00000140465|P04798-2|CYP1A1	REV__nc|ENSG00000140465|P04798-2|CYP1A1	MULTI-MSMS	A375_MHC_IP_R2	2	546.22900390625	2	545.223879	1088.43321	-1.0228	-0.00055767	0.72716	0.00039647	-0.29567	-0.0001612	545.2243226550984	71.256	0.86127	71.991	71.706	72.567	0.73421					35	16	3	0	0	0	0.70329	1	27151	27151		10.824	0	1	9814800	+		9555	19214	6747	6800	9349	9349					-0.10747390766846365
EELYGEKGL	9	Unmodified	_EELYGEKGL_					0	0	0			REV__nc|ENSG00000165837|Q5W0A0-2|ERICH6B	REV__nc|ENSG00000165837|Q5W0A0-2|ERICH6B	MULTI-SECPEP	A375_MHC_IP_R2	2	518.9710693359375	2	519.261122	1036.50769	-0.95814	-0.00049752	0.0058219	3.0231E-06	-0.95232	-0.0004945	519.2610839329502	54.213	0.40532	54.964	54.763	55.169	0.75075					12	7	2	0	0	0	0.78348	1	20442	20442		0.45834	0	1	1331900	+		9556	20630	6748	6801	9350	9350					-0.009102598931804096
EELYGEKGL	9	Unmodified	_EELYGEKGL_					0	0	0			REV__nc|ENSG00000165837|Q5W0A0-2|ERICH6B	REV__nc|ENSG00000165837|Q5W0A0-2|ERICH6B	MULTI-MATCH	A375_MHC_IP_R1	1		2	519.261122	1036.50769	-0.52928	-0.00027484	0.22376	0.00011619	-0.30553	-0.00015865	519.261212193722	54.886	0.55777	54.886	54.67	55.228	0	-0.038613	0.00016334	NaN	0.45834	15	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1505900	+		9557	20630	6748	6801							-0.009102598931804096
EELYGYLKKY	10	Unmodified	_EELYGYLKKY_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-MSMS	A375_MHC_IP_R1	1	436.6298828125	3	435.895695	1304.66525	-0.20914	-9.1163E-05	0.34959	0.00015238	0.14045	6.122E-05	435.8958054779643	58.252	1.1688	58.252	57.974	59.143	0					62	22	6	0	0	0	0.084058	1	20893	20893		67.081	45.281	1	46780000			9558	1500	6749	6802	9351	9351					0.025108196462042542
EELYGYLKKY	10	Unmodified	_EELYGYLKKY_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-MSMS	A375_MHC_IP_R1	1	653.7393798828125	2	653.339904	1304.66525	-0.45742	-0.00029885	0.31021	0.00020267	-0.14721	-9.6177E-05	653.3399736459945	58.257	0.60973	58.257	58.024	58.633	0					33	11	4	0	0	0	0.0086373	1	20906	20906		117.76	66.131	1	12811000			9559	1500	6749	6802	9352	9352					0.025108196462042542
EELYGYLKKY	10	Unmodified	_EELYGYLKKY_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-MSMS	A375_MHC_IP_R2	2	436.62957763671875	3	435.895695	1304.66525	-0.59342	-0.00025867	0.082215	3.5837E-05	-0.5112	-0.00022283	435.8957072114757	57.652	1.0674	58.401	57.762	58.829	0.74894					56	20	5	0	0	0	0.13045	1	21725	21725		57.108	40.833	1	45431000			9560	1500	6749	6802	9353	9353					0.025108196462042542
EELYGYLKKY	10	Unmodified	_EELYGYLKKY_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-MSMS	A375_MHC_IP_R2	2	653.7391967773438	2	653.339904	1304.66525	-1.121	-0.00073242	0.47358	0.00030941	-0.64746	-0.00042301	653.3401191324774	57.644	0.6101	58.393	58.069	58.679	0.74894					29	11	3	0	0	0	2.6752E-05	1	21748	21748		195.45	135.38	1	10662000			9561	1500	6749	6802	9354	9354					0.025108196462042542
EELYIRKLN	9	Unmodified	_EELYIRKLN_					0	0	0			REV__tr|U7SQH7|U7SQH7_FUSNUProteinkinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01642PE=4SV=1	REV__tr|U7SQH7|U7SQH7_FUSNUProteinkinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01642PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	588.706298828125	2	589.332413	1176.65027	-0.49767	-0.00029329	1.2685	0.00074755	0.7708	0.00045426	589.3332379758518	53.003	0.40437	53.003	52.744	53.148	0					10	7	2	0	0	0	0.74875	1	18835	18835		21.747	3.6117	1	1165800	+		9562	28375	6750	6803	9355	9355					0.06901372568881925
EELYLDANQ	9	Unmodified	_EELYLDANQ_					0	0	0		nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN;nc|ENSG00000033122|Q96NW7-3|LRRC7;ENST00000415775.2_1_1:70225872-70503822:+|nuORF;LRRC7|p.A473Gfs*8|1|0.15|ENSG00000033122|chr1:70021115-70021116|-/GTGATAGATA|frameshift_variant;nc|ENSG00000033122|Q96NW7-2|LRRC7;nc|ENSG00000033122|Q96NW7|LRRC7;ENSG00000033122|ENST00000651989|LRRC7	nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000033122|Q96NW7-2|LRRC7	nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-SECPEP	A375_MHC_IP_R2	2	547.12939453125	2	547.753661	1093.49277	-0.73164	-0.00040076	-0.067196	-3.6807E-05	-0.79883	-0.00043756	547.7534388401233	70.238	0.40753	70.972	70.844	71.251	0.73421					11	7	2	0	0	0	0.69507	1	26694	26694		19.257	2.3147	1	1054400			9563	3113;1122	6751	6804	9356	9356					-0.05023751761177664
EELYLQKY	8	Unmodified	_EELYLQKY_					0	0	0			REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	MSMS	A375_MHC_IP_R1	1	543.1973876953125	2	543.279315	1084.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.07	1	137.07	136.57	137.57	0								0	0	0	0.16876	1	52777	52777		9.3474	0	1		+		9564	27163	6752	6805	9357	9357					0.005186170035358373
EELYNNPQ	8	Unmodified	_EELYNNPQ_					0	0	0		nc|ENSG00000257335|O43451-1|MGAM;ENSG00000257335|ENST00000475668|MGAM;MGAM|p.P1408S|1|0.39|ENSG00000257335|chr7:142062667-142062667|C/T|missense_variant;MGAM|p.E1397K|3|0.45|ENSG00000257335|chr7:142062634-142062634|G/A|missense_variant	nc|ENSG00000257335|O43451-1|MGAM	nc|ENSG00000257335|O43451-1|MGAM	MULTI-SECPEP	A375_MHC_IP_R1	1	504.1268005371094	2	503.727446	1005.44034	-0.012259	-6.175E-06	-0.57447	-0.00028937	-0.58672	-0.00029555	503.72711980035257	112.68	1.1163	112.68	112.18	113.29	0					34	21	2	0	0	0	0.96266	1	41298	41298		7.2892	0	1	3333100			9565	9908	6753	6806	9358	9358					-0.06216290104134714
EELYQCLAM	9	Unmodified	_EELYQCLAM_					0	0	0			REV__ENSG00000139780|ENST00000267273|METTL21C	REV__ENSG00000139780|ENST00000267273|METTL21C	MULTI-SECPEP	A375_MHC_IP_R1	1	549.653564453125	2	550.24356	1098.47257	-0.84797	-0.00046659	-0.46506	-0.0002559	-1.313	-0.00072249	550.2432430804644	26.144	0.45551	26.144	25.816	26.271	0					11	8	2	0	0	0	0.60917	1	7727	7727		25.399	4.5281	1	2143900	+		9566	19182	6754	6807	9359	9359					-0.07272962017009377
EELYQTFQR	9	Unmodified	_EELYQTFQR_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.R415Efs*11|1|0.09|ENSG00000167658|chr19:3980617-3980617|G/-|frameshift_variant;EEF2|p.V416Lfs*18|1|0.09|ENSG00000167658|chr19:3980618-3980619|-/AGCAATCCGCCTGCCTCAGCCTC|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MSMS	A375_MHC_IP_R2	2	405.2907409667969	3	405.199777	1212.5775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.403	1	22.022	21.522	22.522	0.61932								0	0	0	0.15486	1	6736	6736		4.897	1.31	1				9567	7207	6755	6808	9360	9360					-0.02028381224590703
EELYTKKLW	9	Unmodified	_EELYTKKLW_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-MSMS	A375_MHC_IP_R1	1	606.2300415039062	2	605.329339	1208.64412	-0.28887	-0.00017486	0.038232	2.3143E-05	-0.25063	-0.00015172	605.3291821737954	57.152	0.459	57.152	56.905	57.364	0					19	8	3	0	0	0	0.033808	1	20476	20476		69.105	41.476	1	6891100			9568	8680	6756	6809	9361	9361					0.04814854337337238
EELYTKKLW	9	Unmodified	_EELYTKKLW_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-SECPEP	A375_MHC_IP_R1	1	404.2886047363281	3	403.888651	1208.64412	-0.39159	-0.00015816	0.38503	0.00015551	-0.0065668	-2.6523E-06	403.88873976115326	57.142	0.91617	57.142	56.855	57.771	0					40	17	4	0	0	0	0.50702	1	20462	20462		29.841	22.364	1	17811000			9569	8680	6756	6809	9362	9362					0.04814854337337238
EELYTKKLW	9	Unmodified	_EELYTKKLW_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-SECPEP	A375_MHC_IP_R2	2	404.2882995605469	3	403.888651	1208.64412	-0.29436	-0.00011889	0.08968	3.6221E-05	-0.20468	-8.2667E-05	403.8886393388955	56.376	0.91594	57.126	56.796	57.712	0.75015					41	17	4	0	0	0	0.13064	1	21252	21252		59.368	51.891	1	21901000			9570	8680	6756	6809	9363	9363					0.04814854337337238
EELYTKKLW	9	Unmodified	_EELYTKKLW_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-SECPEP	A375_MHC_IP_R2	2	605.7288818359375	2	605.329339	1208.64412	-0.73753	-0.00044645	-0.094487	-5.7196E-05	-0.83202	-0.00050364	605.329391027367	56.376	0.61186	57.126	56.745	57.356	0.75015					21	11	3	0	0	0	0.019499	1	21278	21278		114.2	94.945	1	7895300			9571	8680	6756	6809	9364	9364					0.04814854337337238
EELYTKVM	8	Unmodified	_EELYTKVM_					0	0	0			REV__nc|ENSG00000115919|Q16719-2|KYNU	REV__nc|ENSG00000115919|Q16719-2|KYNU	MSMS	A375_MHC_IP_R1	1	506.8017272949219	2	506.754618	1011.49468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.68	1	101.68	101.18	102.18	0								0	0	0	0.16876	1	37366	37366		9.3474	0	1		+		9572	17923	6757	6810	9365	9365					-0.010604142769238933
EELYYKNG	8	Unmodified	_EELYYKNG_					0	0	0		tr|U7SNL9|U7SNL9_FUSNUCytoplasmicproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02036PE=4SV=1	tr|U7SNL9|U7SNL9_FUSNUCytoplasmicproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02036PE=4SV=1	tr|U7SNL9|U7SNL9_FUSNUCytoplasmicproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02036PE=4SV=1	MSMS	A375_MHC_IP_R2	2	508.2023620605469	2	508.24019	1014.46583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.649	1	97.405	96.905	97.905	0.75586								0	0	0	0.16876	1	36691	36691		13.508	0	1				9573	29557	6758	6811	9366	9366					-0.0408281558170529
EEMARHLREY	10	Unmodified	_EEMARHLREY_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENSG00000135406|ENST00000257860|PRPH;nc|ENSG00000135406|P41219-2|PRPH	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R1	1	444.9457702636719	3	445.215433	1332.62447	-0.2902	-0.0001292	-0.28126	-0.00012522	-0.57146	-0.00025442	445.2151771776154	23.58	1.1175	23.58	22.924	24.042	0					46	21	3	0	0	0	0.54273	1	6531	6531		25.155	11.636	1	61121000			9574	1093	6759	6812	9367	9367					-0.02853844945070705
EEMARHLREY	10	Unmodified	_EEMARHLREY_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENSG00000135406|ENST00000257860|PRPH;nc|ENSG00000135406|P41219-2|PRPH	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MATCH	A375_MHC_IP_R2	2		3	445.215433	1332.62447	-0.72681	-0.00032359	-0.016506	-7.3485E-06	-0.74332	-0.00033094	445.2153565081667	22.566	0.51067	23.196	22.959	23.47	0.63014	-0.19205	0.00025793	NaN	25.155	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1538000			9575	1093	6759	6812							-0.02853844945070705
EEMARHLREY	10	Oxidation (M)	_EEM(Oxidation (M))ARHLREY_		EEM(1)ARHLREY		EEM(47)ARHLREY	0	0	1		ENSG00000026025|ENST00000544301|VIM;ENSG00000135406|ENST00000257860|PRPH;nc|ENSG00000135406|P41219-2|PRPH	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	A375_MHC_IP_R1	1	450.9470520019531	3	450.547071	1348.61938	-0.10795	-4.8638E-05	-0.11515	-5.1879E-05	-0.2231	-0.00010052	450.5470299364583	20.077	1.4741	20.077	19.776	21.25	0					41	28	2	0	0	0	0.58566	1	5080	5080		47.053	27.066	1	7451800			9576	1093	6759	6813	9368	9368		14			-0.04098148807679536
EEMCYEDD	8	Unmodified	_EEMCYEDD_					0	0	0			REV__ENSG00000109927|ENST00000392793|TECTA	REV__ENSG00000109927|ENST00000392793|TECTA	MSMS	A375_MHC_IP_R1	1	517.1497192382812	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.805	1	49.805	49.305	50.305	0								0	0	0	0.16876	1	17623	17623		2.5775	0	1		+		9577	17604	6760	6814	9369	9369					-0.20963274352425287
EEMCYEDD	8	Unmodified	_EEMCYEDD_					0	0	0			REV__ENSG00000109927|ENST00000392793|TECTA	REV__ENSG00000109927|ENST00000392793|TECTA	MSMS	A375_MHC_IP_R1	1	517.1710205078125	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.332	1	71.332	70.832	71.832	0								0	0	0	0.16876	1	25913	25913		5.7604	4.1078	1		+		9578	17604	6760	6814	9370	9370					-0.20963274352425287
EEMDLFTKY	9	Oxidation (M)	_EEM(Oxidation (M))DLFTKY_		EEM(1)DLFTKY		EEM(120)DLFTKY	0	0	1		ENSG00000092020|ENST00000261475|PPP2R3C;ENST00000556254.1_1_14:35579616-35591165:-|nuORF;ENST00000557773.5_1_14:35568434-35591165:-|nuORF	ENSG00000092020|ENST00000261475|PPP2R3C	ENSG00000092020|ENST00000261475|PPP2R3C	MULTI-MSMS	A375_MHC_IP_R1	1	596.6651611328125	2	596.265547	1190.51654	-0.43033	-0.00025659	0.13914	8.2965E-05	-0.29119	-0.00017363	596.2656062420485	61.407	0.71275	61.407	61.075	61.788	0					25	13	2	0	0	0	0.0099679	1	22118	22118		121.53	92.453	1	24910000			9579	1990	6761	6815	9371	9371		72			-0.07109654319015135
EEMDLFTKY	9	Oxidation (M)	_EEM(Oxidation (M))DLFTKY_		EEM(1)DLFTKY		EEM(150)DLFTKY	0	0	1		ENSG00000092020|ENST00000261475|PPP2R3C;ENST00000556254.1_1_14:35579616-35591165:-|nuORF;ENST00000557773.5_1_14:35568434-35591165:-|nuORF	ENSG00000092020|ENST00000261475|PPP2R3C	ENSG00000092020|ENST00000261475|PPP2R3C	MULTI-MSMS	A375_MHC_IP_R2	2	596.6654052734375	2	596.265547	1190.51654	-0.86005	-0.00051282	0.19732	0.00011766	-0.66273	-0.00039516	596.2656743444583	60.694	0.75977	61.439	61.109	61.869	0.74503					24	14	2	0	0	0	0.001114	1	22950	22950		152.89	109.03	1	27410000			9580	1990	6761	6815	9372	9372		72			-0.07109654319015135
EEMDLFTKY	9	Unmodified	_EEMDLFTKY_					0	0	0		ENSG00000092020|ENST00000261475|PPP2R3C;ENST00000556254.1_1_14:35579616-35591165:-|nuORF;ENST00000557773.5_1_14:35568434-35591165:-|nuORF	ENSG00000092020|ENST00000261475|PPP2R3C	ENSG00000092020|ENST00000261475|PPP2R3C	MULTI-SECPEP	A375_MHC_IP_R1	1	588.6679077148438	2	588.26809	1174.52163	-0.1901	-0.00011183	-0.49115	-0.00028892	-0.68124	-0.00040075	588.2678362012937	82.798	0.96248	82.798	82.469	83.432	0					52	18	4	0	0	0	0.019499	1	30229	30229		103.42	72.783	1	27246000			9581	1990	6761	6816	9373	9373					-0.05865350456383567
EEMDLFTKY	9	Unmodified	_EEMDLFTKY_					0	0	0		ENSG00000092020|ENST00000261475|PPP2R3C;ENST00000556254.1_1_14:35579616-35591165:-|nuORF;ENST00000557773.5_1_14:35568434-35591165:-|nuORF	ENSG00000092020|ENST00000261475|PPP2R3C	ENSG00000092020|ENST00000261475|PPP2R3C	MULTI-SECPEP	A375_MHC_IP_R2	2	588.6677856445312	2	588.26809	1174.52163	-0.61055	-0.00035917	0.064243	3.7792E-05	-0.54631	-0.00032138	588.2682225014383	82.122	0.81389	82.865	82.533	83.347	0.74293					58	15	5	0	0	0	0.074405	1	31139	31139		70.332	38.027	1	26122000			9582	1990	6761	6816	9374	9374					-0.05865350456383567
EEMEAFPEKF	10	Oxidation (M)	_EEM(Oxidation (M))EAFPEKF_		EEM(1)EAFPEKF		EEM(130)EAFPEKF	0	0	1		ENST00000473000.2_1_6:3267793-3267943:+|nuORF;ENSG00000180822|ENST00000438998|PSMG4;ENST00000380305.4_1_6:3259174-3267943:+|nuORF;nc|ENSG00000180822|Q5JS54-2|PSMG4	ENST00000473000.2_1_6:3267793-3267943:+|nuORF	ENST00000473000.2_1_6:3267793-3267943:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	637.1756591796875	2	636.776279	1271.538	-0.6614	-0.00042117	-0.29257	-0.0001863	-0.95398	-0.00060747	636.7763737919931	59.734	0.66036	59.734	59.397	60.057	0					27	12	3	0	0	0	0.011232	1	21475	21475		125.04	102.3	1	4863600			9583	8318	6762	6817	9375	9375		402			-0.08690269290332253
EEMEAFPEKF	10	Oxidation (M)	_EEM(Oxidation (M))EAFPEKF_		EEM(1)EAFPEKF		EEM(110)EAFPEKF	0	0	1		ENST00000473000.2_1_6:3267793-3267943:+|nuORF;ENSG00000180822|ENST00000438998|PSMG4;ENST00000380305.4_1_6:3259174-3267943:+|nuORF;nc|ENSG00000180822|Q5JS54-2|PSMG4	ENST00000473000.2_1_6:3267793-3267943:+|nuORF	ENST00000473000.2_1_6:3267793-3267943:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	637.17529296875	2	636.776279	1271.538	-1.1696	-0.0007448	-0.30231	-0.0001925	-1.472	-0.00093731	636.7762798296819	59.055	0.60876	59.802	59.489	60.098	0.74714					23	11	3	0	0	0	0.011669	1	22320	22320		114.19	91.45	1	3893200			9584	8318	6762	6817	9376	9376		402			-0.08690269290332253
EEMEAFPEKF	10	Unmodified	_EEMEAFPEKF_					0	0	0		ENST00000473000.2_1_6:3267793-3267943:+|nuORF;ENSG00000180822|ENST00000438998|PSMG4;ENST00000380305.4_1_6:3259174-3267943:+|nuORF;nc|ENSG00000180822|Q5JS54-2|PSMG4	ENST00000473000.2_1_6:3267793-3267943:+|nuORF	ENST00000473000.2_1_6:3267793-3267943:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	629.6806030273438	2	628.778822	1255.54309	-0.60653	-0.00038137	-0.40771	-0.00025636	-1.0142	-0.00063773	628.778643360781	75.085	0.50672	75.085	74.805	75.312	0					21	9	3	0	0	0	0.10198	1	27349	27349		63.227	46.115	1	4131000			9585	8318	6762	6818	9377	9377					-0.07445965427700685
EEMEAFPEKF	10	Unmodified	_EEMEAFPEKF_					0	0	0		ENST00000473000.2_1_6:3267793-3267943:+|nuORF;ENSG00000180822|ENST00000438998|PSMG4;ENST00000380305.4_1_6:3259174-3267943:+|nuORF;nc|ENSG00000180822|Q5JS54-2|PSMG4	ENST00000473000.2_1_6:3267793-3267943:+|nuORF	ENST00000473000.2_1_6:3267793-3267943:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	629.177978515625	2	628.778822	1255.54309	-0.85198	-0.00053571	0.276	0.00017354	-0.57598	-0.00036217	628.7788529315246	74.407	0.4579	75.145	74.907	75.365	0.73752					16	8	3	0	0	0	0.1298	1	28262	28262		57.249	34.513	1	4495800			9586	8318	6762	6818	9378	9378					-0.07445965427700685
EEMECHEYM	9	Unmodified	_EEMECHEYM_					0	0	0		ENST00000270720.11_1_1:1887019-1905630:-|nuORF;nc|ENSG00000142609|Q9C0B2-2|CFAP74;nc|ENSG00000142609|Q9C0B2|CFAP74;ENSG00000142609|ENST00000682832|CFAP74	ENST00000270720.11_1_1:1887019-1905630:-|nuORF	ENST00000270720.11_1_1:1887019-1905630:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1200.1011962890625	1	1200.40061	1199.39333	0.25048	0.00030068	-0.31829	-0.00038207	-0.067808	-8.1397E-05	1200.4018490365074	119.51	0.45557	120.05	119.79	120.24	0.5321					12	8	2	0	0	0	0.72507	1	45548	45548		4.756	0	1	11429000			9587	5316	6763	6819	9379	9379					-0.1983897703346429
EEMERMLHV	9	Unmodified	_EEMERMLHV_					0	0	0		ENSG00000170832|ENST00000300896|USP32;nc|ENSG00000170832|Q8NFA0-2|USP32	ENSG00000170832|ENST00000300896|USP32	ENSG00000170832|ENST00000300896|USP32	MULTI-SECPEP	A375_MHC_IP_R1	1	587.1332397460938	2	587.273183	1172.53181	-0.74034	-0.00043478	4.1969	0.0024648	3.4566	0.00203	587.2750641883158	29.36	0.45705	29.36	28.996	29.453	0					14	8	3	0	0	0	0.71341	1	9039	9039		18.146	14.202	1	6778100			9588	7544	6764	6820	9380	9380					-0.04755066002826425
EEMEWFNNY	9	Unmodified	_EEMEWFNNY_					0	0	0		ENSG00000101003|ENST00000262460|GINS1	ENSG00000101003|ENST00000262460|GINS1	ENSG00000101003|ENST00000262460|GINS1	MULTI-MSMS	A375_MHC_IP_R1	1	631.6443481445312	2	631.245146	1260.47574	-0.50276	-0.00031736	0.1789	0.00011293	-0.32386	-0.00020443	631.245286979323	111.1	0.87086	111.1	110.59	111.46	0					32	16	3	0	0	0	0.0022313	1	40694	40694		141.83	127.42	1	2965100			9589	2243	6765	6821	9381	9381					-0.1440799563863493
EEMEWFNNY	9	Unmodified	_EEMEWFNNY_					0	0	0		ENSG00000101003|ENST00000262460|GINS1	ENSG00000101003|ENST00000262460|GINS1	ENSG00000101003|ENST00000262460|GINS1	MULTI-SECPEP	A375_MHC_IP_R2	2	631.6450805664062	2	631.245146	1260.47574	-0.64792	-0.000409	0.056285	3.5529E-05	-0.59164	-0.00037347	631.2453196940068	110.43	0.71445	111.17	110.78	111.5	0.73692					30	13	3	0	0	0	0.011178	1	41623	41623		128.37	114.46	1	3301800			9590	2243	6765	6821	9382	9382					-0.1440799563863493
EEMEWFNNY	9	Oxidation (M)	_EEM(Oxidation (M))EWFNNY_		EEM(1)EWFNNY		EEM(100)EWFNNY	0	0	1		ENSG00000101003|ENST00000262460|GINS1	ENSG00000101003|ENST00000262460|GINS1	ENSG00000101003|ENST00000262460|GINS1	MULTI-SECPEP	A375_MHC_IP_R1	1	639.6419677734375	2	639.242603	1276.47065	-0.83823	-0.00053583	-0.09676	-6.1853E-05	-0.93499	-0.00059769	639.2427161985834	91.123	0.55603	91.123	90.845	91.401	0					19	10	2	0	0	0	0.030624	1	33474	33474		100.37	92.461	1	3513900			9591	2243	6765	6822	9383	9383		89			-0.1565229950124376
EEMEWFNNY	9	Oxidation (M)	_EEM(Oxidation (M))EWFNNY_		EEM(1)EWFNNY		EEM(89)EWFNNY	0	0	1		ENSG00000101003|ENST00000262460|GINS1	ENSG00000101003|ENST00000262460|GINS1	ENSG00000101003|ENST00000262460|GINS1	MULTI-SECPEP	A375_MHC_IP_R2	2	639.6427612304688	2	639.242603	1276.47065	-0.65267	-0.00041722	-0.57191	-0.00036559	-1.2246	-0.00078281	639.2423142359497	90.638	0.70877	91.373	91.058	91.767	0.73451					27	13	3	0	0	0	0.047455	1	34481	34481		88.904	81.614	1	3275300			9592	2243	6765	6822	9384	9384		89			-0.1565229950124376
EEMFEQDF	8	Unmodified	_EEMFEQDF_					0	0	0		ENSG00000132464|ENST00000396073|ENAM	ENSG00000132464|ENST00000396073|ENAM	ENSG00000132464|ENST00000396073|ENAM	MSMS	A375_MHC_IP_R1	1	537.6665649414062	2	537.707865	1073.40118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.844	1	68.844	68.344	69.344	0								0	0	0	0.16876	1	24974	24974		10.183	1.5901	1				9593	4410	6766	6823	9385	9385					-0.13258758450024288
EEMGLUDSNP	10	Unmodified	_EEMGLUDSNP_					0	0	0			REV__ENSG00000138018|ENST00000260585|SELENOI	REV__ENSG00000138018|ENST00000260585|SELENOI	MSMS	A375_MHC_IP_R2	2	571.6737060546875	2	571.682307	1141.35006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.899	1	61.644	61.144	62.144	0.74503								0	0	0	0.1552	1	23068	23068		0	0	0		+		9594	19055	6767	6824	9386	9386					-0.2149595104981472
EEMGLUDSNP	10	Unmodified	_EEMGLUDSNP_					0	0	0			REV__ENSG00000138018|ENST00000260585|SELENOI	REV__ENSG00000138018|ENST00000260585|SELENOI	MULTI-SECPEP	A375_MHC_IP_R2	2	571.1815795898438	2	571.682307	1141.35006	-0.16772	-9.588E-05	0.14794	8.4572E-05	-0.01978	-1.1308E-05	572.186399898837	68.458	0.20224	69.193	69.07	69.272	0.73511					5	3	2	0	0	0	0.93799	1	25949	25949		0	0	0	1210300	+		9595	19055	6767	6824	9387	9387					-0.2149595104981472
EEMGPEPEEQ	10	Unmodified	_EEMGPEPEEQ_					0	0	0			REV__nc|ENSG00000168081|Q13519-2|PNOC	REV__nc|ENSG00000168081|Q13519-2|PNOC	MULTI-MSMS	A375_MHC_IP_R2	2	588.1326904296875	2	587.732068	1173.44958	-0.66644	-0.00039169	0.35506	0.00020868	-0.31138	-0.00018301	587.7326171004802	50.936	0.85978	51.69	51.311	52.17	0.75406					49	16	4	0	0	0	0.52785	1	19092	19092		26.268	2.2476	1	15351000	+		9596	20825	6768	6825	9388	9388					-0.13020309600779
EEMGSGVHQL	10	Unmodified	_EEMGSGVHQL_					0	0	0		ENSG00000271503|ENST00000651122|CCL5	ENSG00000271503|ENST00000651122|CCL5	ENSG00000271503|ENST00000651122|CCL5	MULTI-MSMS	A375_MHC_IP_R1	1	545.1719360351562	2	543.747856	1085.48116	-0.80403	-0.00043719	-0.76967	-0.00041851	-1.5737	-0.0008557	543.7478692419357	32.595	0.80976	32.595	32.179	32.989	0					43	15	4	0	0	0	0.57505	1	10503	10503		22.736	4.5899	1	19326000			9597	9987	6769	6826	9389	9389					-0.05816272056154048
EEMHAHSH	8	Unmodified	_EEMHAHSH_					0	0	0			REV__nc|ENSG00000095539|Q9NTN9-3|SEMA4G	REV__nc|ENSG00000095539|Q9NTN9-3|SEMA4G	MULTI-MSMS	A375_MHC_IP_R1	1	489.6899719238281	2	489.198333	976.382113	-0.54605	-0.00026712	0.75419	0.00036895	0.20815	0.00010183	489.19910796712117	68.297	0.81263	68.297	68.006	68.819	0					33	15	3	0	0	0	0.77702	1	24686	24686		5.7604	5.7604	1	4149700	+		9598	27137	6770	6827	9390	9390					-0.10702250230406207
EEMHEGIKN	9	Unmodified	_EEMHEGIKN_					0	0	0			REV__nc|ENSG00000198431|Q16881-7|TXNRD1	REV__nc|ENSG00000198431|Q16881-7|TXNRD1	MULTI-MSMS	A375_MHC_IP_R2	2	545.1718139648438	2	543.747856	1085.48116	-0.82421	-0.00044816	-0.54882	-0.00029842	-1.373	-0.00074658	543.7479431069008	31.892	0.71054	32.629	32.249	32.96	0.73691					56	13	6	0	0	0	0.38603	1	11188	11188		25.399	7.253	1	22275000	+		9599	22371	6771	6828	9391	9391					-0.05816272056154048
EEMKALRERQR	11	Unmodified	_EEMKALRERQR_					0	0	0		nc|ENSG00000158856|Q08495-3|DMTN;nc|ENSG00000158856|Q08495-4|DMTN;nc|ENSG00000158856|Q08495-2|DMTN;ENSG00000158856|ENST00000358242|DMTN	nc|ENSG00000158856|Q08495-3|DMTN	nc|ENSG00000158856|Q08495-3|DMTN	MULTI-MSMS	A375_MHC_IP_R1	1	482.9805908203125	3	482.592903	1444.75688	-0.19	-9.1694E-05	-0.48925	-0.00023611	-0.67925	-0.0003278	482.59266671329993	38.654	0.50812	38.654	38.475	38.983	0					14	9	2	0	0	0	0.73472	1	13059	13059		4.4062	0.81348	1	6242700			9600	6335	6772	6829	9392	9392					0.05229179791717797
EEMKRVKKQ	9	Unmodified	_EEMKRVKKQ_					0	0	0			REV__ENSG00000255150|ENST00000527879|EID3	REV__ENSG00000255150|ENST00000527879|EID3	MULTI-SECPEP	A375_MHC_IP_R2	2	588.729736328125	2	588.33189	1174.64923	-0.82554	-0.00048569	-2.4516	-0.0014424	-3.2771	-0.0019281	588.330960567582	51.627	0.66283	52.38	52.219	52.882	0.75225					24	12	3	0	0	0	0.76452	1	19446	19446		7.9102	6.7168	1	5020500	+		9601	22871	6773	6830	9393	9393					0.06888834928304277
EEMKSGLKDF	10	Unmodified	_EEMKSGLKDF_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000196862|ENST00000408999|RGPD4	MULTI-MSMS	A375_MHC_IP_R1	1	592.6869506835938	2	592.286814	1182.55907	-0.32048	-0.00018982	-0.31256	-0.00018512	-0.63304	-0.00037494	592.2868362882284	33.883	0.35344	33.883	33.698	34.052	0					13	6	3	0	0	0	0.067551	1	11137	11137		70.929	32.314	1	2763800			9602	8657;9090;6015	6774	6831	9394	9394					-0.024902591907675742
EEMKSGLKDF	10	Unmodified	_EEMKSGLKDF_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000196862|ENST00000408999|RGPD4	MULTI-SECPEP	A375_MHC_IP_R1	1	395.5935974121094	3	395.193635	1182.55907	0.0056641	2.2384E-06	-0.14493	-5.7277E-05	-0.13927	-5.5039E-05	395.19360020402064	33.924	0.40465	33.924	33.698	34.103	0					21	7	4	0	0	0	0.64789	1	11107	11107		28.181	14.663	1	10892000			9603	8657;9090;6015	6774	6831	9395	9395					-0.024902591907675742
EEMKSGLKDF	10	Unmodified	_EEMKSGLKDF_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000196862|ENST00000408999|RGPD4	MULTI-SECPEP	A375_MHC_IP_R2	2	395.59332275390625	3	395.193635	1182.55907	-0.36937	-0.00014597	0.43331	0.00017124	0.063942	2.5269E-05	395.1939965062401	33.148	1.0159	33.9	33.686	34.702	0.75225					40	19	4	0	0	0	0.77698	1	11844	11844		24.957	20.551	1	16299000			9604	8657;9090;6015	6774	6831	9396	9396					-0.024902591907675742
EEMKSGLKDF	10	Oxidation (M)	_EEM(Oxidation (M))KSGLKDF_		EEM(1)KSGLKDF		EEM(61)KSGLKDF	0	0	1		ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000196862|ENST00000408999|RGPD4	MULTI-SECPEP	A375_MHC_IP_R1	1	600.6841430664062	2	600.284271	1198.55399	-0.38064	-0.00022849	0.12624	7.5778E-05	-0.2544	-0.00015271	600.2841682464424	25.332	0.25562	25.332	25.204	25.46	0					8	4	2	0	0	0	0.15631	1	7413	7413		61.09	24.584	1	3411700			9605	8657;9090;6015	6774	6832	9397	9397		322			-0.037345630533991425
EEMLGNCYMA	10	Unmodified	_EEMLGNCYMA_					0	0	0			REV__ENST00000503273.1_1_5:176338353-176395858:-|nuORF	REV__ENST00000503273.1_1_5:176338353-176395858:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	581.2014770507812	2	580.724677	1159.4348	-0.045061	-2.6168E-05	-0.5348	-0.00031057	-0.57986	-0.00033674	580.7242977035087	42.547	0.80975	42.547	42.233	43.043	0					24	15	2	0	0	0	0.6806	1	14750	14750		14.838	0.25658	1	1896500	+		9606	16867	6775	6833	9398	9398					-0.1385379627411112
EEMLGNCYMA	10	Unmodified	_EEMLGNCYMA_					0	0	0			REV__ENST00000503273.1_1_5:176338353-176395858:-|nuORF	REV__ENST00000503273.1_1_5:176338353-176395858:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	581.2012329101562	2	580.724677	1159.4348	-0.28557	-0.00016583	-0.69304	-0.00040246	-0.9786	-0.0005683	580.7242123797329	41.895	0.86899	42.67	42.3	43.169	0.77451					24	16	2	0	0	0	0.6806	1	15472	15472		14.838	0.25658	1	2303200	+		9607	16867	6775	6833	9399	9399					-0.1385379627411112
EEMLGNCYMA	10	Unmodified	_EEMLGNCYMA_					0	0	0			REV__ENST00000503273.1_1_5:176338353-176395858:-|nuORF	REV__ENST00000503273.1_1_5:176338353-176395858:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	580.724677	1159.4348	-0.045061	-2.6168E-05	-0.5348	-0.00031057	-0.57986	-0.00033674	580.7242977035087	42.547	0.80975	42.547	42.233	43.043	0	-0.06156	7.8686E-05	NaN	14.838	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1896500	+		9608	16867	6775	6833							-0.1385379627411112
EEMLYRMY	8	Unmodified	_EEMLYRMY_					0	0	0			REV__ENSG00000122406|ENST00000370321|RPL5	REV__ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	A375_MHC_IP_R1	1	568.2151489257812	2	567.751553	1133.48855	-0.23159	-0.00013149	-1.6966	-0.00096322	-1.9282	-0.0010947	568.2539751102895	88.668	0.20376	88.668	88.51	88.714	0					5	3	2	0	0	0	0.75322	1	32539	32539		19.439	5.9311	1	709860	+		9609	18203	6776	6834	9400	9400					-0.07285255780107036
EEMMRYNQ	8	Unmodified	_EEMMRYNQ_					0	0	0		ENSG00000132464|ENST00000396073|ENAM;ENAM|p.N64I|1|0.29|ENSG00000132464|chr4:70632673-70632673|A/T|missense_variant;ENAM|p.K53E|1|0.36|ENSG00000132464|chr4:70631882-70631882|A/G|missense_variant	ENSG00000132464|ENST00000396073|ENAM	ENSG00000132464|ENST00000396073|ENAM	MSMS	A375_MHC_IP_R2	2	550.720947265625	2	550.728609	1099.44266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.133	1	65.871	65.371	66.371	0.73811								0	0	0	0.16876	1	24695	24695		9.3474	0.75416	1				9610	4410	6777	6835	9401	9401					-0.10307900962334315
EEMPATKGGF	10	Unmodified	_EEMPATKGGF_					0	0	0		nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	nc|ENSG00000124789|P49790-2|NUP153	nc|ENSG00000124789|P49790-2|NUP153	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1466064453125	2	533.747324	1065.4801	-1.2063	-0.00064385	-0.027401	-1.4625E-05	-1.2337	-0.00065847	533.7472469084562	36.663	0.55908	37.434	37.056	37.615	0.7709					8	5	2	0	0	0	0.46496	1	13404	13404		49.554	13.51	1	6982900			9611	3932	6778	6836	9402	9402					-0.050024864250644896
EEMQTKRD	8	Unmodified	_EEMQTKRD_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MSMS	A375_MHC_IP_R2	2	519.7208862304688	2	518.740031	1035.46551	-0.87262	-0.00045266	0.55886	0.0002899	-0.31376	-0.00016276	518.7403297276447	54.749	0.66087	55.5	55.118	55.779	0.75075					30	12	3	0	0	0	0.77643	1	20681	20681		7.9102	1.187	1	3979100			9612	8698	6779	6837	9403	9403					-0.05080558573217786
EEMREPVE	8	Unmodified	_EEMREPVE_					0	0	0		tr|U7T5W3|U7T5W3_FUSNUOxaloacetatedecarboxylase(Na(+)extruding)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00409PE=4SV=1	tr|U7T5W3|U7T5W3_FUSNUOxaloacetatedecarboxylase(Na(+)extruding)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00409PE=4SV=1	tr|U7T5W3|U7T5W3_FUSNUOxaloacetatedecarboxylase(Na(+)extruding)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00409PE=4SV=1	MSMS	A375_MHC_IP_R1	1	509.72650146484375	2	509.729132	1017.44371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.79	1	117.79	117.29	118.29	0								0	0	0	0.16876	1	43299	43299		15.847	1.9411	1				9613	30033	6780	6838	9404	9404					-0.06431363321780736
EEMRFLREWVE	11	Unmodified	_EEMRFLREWVE_					0	0	0		nc|ENSG00000212789|Q8NFI4|ST13P5;ENSG00000100380|ENST00000216218|ST13	nc|ENSG00000212789|Q8NFI4|ST13P5	nc|ENSG00000212789|Q8NFI4|ST13P5	MSMS	A375_MHC_IP_R2	2	508.6451721191406	3	508.581893	1522.72385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.342	1	50.099	49.599	50.599	0.75737								0	0	0	0.16313	1	18540	18540		2.4348	1.1051	1				9614	2170	6781	6839	9405	9405					-0.01660447050971925
EEMRKIIGRY	10	Oxidation (M)	_EEM(Oxidation (M))RKIIGRY_		EEM(1)RKIIGRY		EEM(48)RKIIGRY	0	0	1		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-MSMS	A375_MHC_IP_R1	1	437.96759033203125	3	437.567695	1309.68126	0.11884	5.1999E-05	-0.41904	-0.00018336	-0.30021	-0.00013136	437.90193371487425	21.487	0.55859	21.487	21.25	21.808	0					21	10	3	0	0	0	0.21149	1	5666	5666		48.073	31.024	1	3059500			9615	1120	6782	6840	9406	9406		16			0.03880202611458117
EEMRKIIGRY	10	Unmodified	_EEMRKIIGRY_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-MSMS	A375_MHC_IP_R1	1	432.63629150390625	3	432.236057	1293.68634	-0.10302	-4.4527E-05	1.0459	0.0004521	0.94293	0.00040757	432.2365236490825	31.692	0.40701	31.692	31.514	31.921	0					12	7	2	0	0	0	0.47255	1	10225	10225		20.871	13.442	1	4384700			9616	1120	6782	6841	9407	9407					0.05124506474089685
EEMRKIIGRY	10	Unmodified	_EEMRKIIGRY_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-MSMS	A375_MHC_IP_R2	2	432.63623046875	3	432.236057	1293.68634	-0.26789	-0.00011579	0.76637	0.00033125	0.49848	0.00021546	432.2362785106551	30.838	0.45314	31.556	31.317	31.77	0.71857					17	8	3	0	0	0	0.023568	1	10873	10873		64.692	38.571	1	5719500			9617	1120	6782	6841	9408	9408					0.05124506474089685
EEMRKLFEKY	10	Oxidation (M)	_EEM(Oxidation (M))RKLFEKY_		EEM(1)RKLFEKY		EEM(65)RKLFEKY	0	0	1		ENSG00000147140|ENST00000276079|NONO;ENST00000566277.2_1_16:69791529-69791679:-|nuORF;ENST00000486613.6_1_X:70504267-70513876:+|nuORF	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MSMS	A375_MHC_IP_R1	1	463.9674377441406	3	463.567472	1387.68059	-0.29585	-0.00013715	0.40718	0.00018876	0.11133	5.1611E-05	463.5674516526097	27.439	0.35347	27.439	27.28	27.634	0					14	6	3	0	0	0	0.095191	1	8327	8327		64.688	41.672	1	3530800			9618	5662	6783	6842	9409	9409		298			0.0022536317173944553
EEMRKLFEKY	10	Unmodified	_EEMRKLFEKY_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000566277.2_1_16:69791529-69791679:-|nuORF;ENST00000486613.6_1_X:70504267-70513876:+|nuORF	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-SECPEP	A375_MHC_IP_R1	1	458.97015380859375	3	458.235834	1371.68567	-0.059112	-2.7087E-05	-0.3676	-0.00016845	-0.42671	-0.00019554	458.57019837372013	42.628	0.45534	42.628	42.436	42.891	0					22	8	4	0	0	0	0.74574	1	14805	14805		33.821	17.547	1	3527800			9619	5662	6783	6843	9410	9410					0.014696670343482765
EEMRKLFEKY	10	Unmodified	_EEMRKLFEKY_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000566277.2_1_16:69791529-69791679:-|nuORF;ENST00000486613.6_1_X:70504267-70513876:+|nuORF	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-SECPEP	A375_MHC_IP_R2	2	458.6355895996094	3	458.235834	1371.68567	-0.32575	-0.00014927	-0.17398	-7.9724E-05	-0.49973	-0.00022899	458.23579598235426	41.856	0.56219	42.63	42.35	42.913	0.77451					24	10	4	0	0	0	0.3907	1	15555	15555		54.259	43.732	1	6359400			9620	5662	6783	6843	9411	9411					0.014696670343482765
EEMRPHGPEG	10	Unmodified	_EEMRPHGPEG_					0	0	0			REV__nc|ENSG00000279484|Q8NEE0|KLHL30-AS1	REV__nc|ENSG00000279484|Q8NEE0|KLHL30-AS1	MSMS	A375_MHC_IP_R2	2	569.6696166992188	2	569.75093	1137.48731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.14	1	35.904	35.404	36.404	0.76338								0	0	0	0.14983	1	12725	12725		18.146	0	1		+		9621	27546	6784	6844	9412	9412					-0.07593753824630767
EEMRSADE	8	Unmodified	_EEMRSADE_					0	0	0			REV__nc|ENSG00000183199|Q58FF7|HSP90AB3P	REV__nc|ENSG00000183199|Q58FF7|HSP90AB3P	MULTI-MSMS	A375_MHC_IP_R2	2	966.4830932617188	1	966.383301	965.376025	-0.060715	-5.8674E-05	1.6653	0.0016093	1.6046	0.0015506	966.3867097518041	124.11	0.25407	124.44	124.24	124.5	0.32969					6	4	2	0	0	0	0.75322	1	47901	47901		19.439	1.304	1	10282000	+		9622	27399	6785	6845	9413	9413					-0.10804813252593704
EEMSWKDMF	9	Unmodified	_EEMSWKDMF_					0	0	0		ENSG00000105393|ENST00000598188|BABAM1	ENSG00000105393|ENST00000598188|BABAM1	ENSG00000105393|ENST00000598188|BABAM1	MULTI-SECPEP	A375_MHC_IP_R1	1	602.1460571289062	2	601.746467	1201.47838	-0.33851	-0.00020369	0.36803	0.00022146	0.029524	1.7766E-05	601.7466235347173	100.69	0.50695	100.69	100.38	100.89	0					15	9	2	0	0	0	0.20451	1	37028	37028		57.722	40.78	1	1437800			9623	2598	6786	6846	9414	9414					-0.11429863505350113
EEMSWKDMF	9	Unmodified	_EEMSWKDMF_					0	0	0		ENSG00000105393|ENST00000598188|BABAM1	ENSG00000105393|ENST00000598188|BABAM1	ENSG00000105393|ENST00000598188|BABAM1	MULTI-SECPEP	A375_MHC_IP_R2	2	602.1466064453125	2	601.746467	1201.47838	-0.24615	-0.00014812	0.37663	0.00022663	0.13048	7.8517E-05	601.7467981384646	99.94	0.45566	100.7	100.42	100.88	0.76278					13	8	2	0	0	0	0.50484	1	37935	37935		34.932	22.401	1	1530100			9624	2598	6786	6846	9415	9415					-0.11429863505350113
EEMTLKQFL	9	Unmodified	_EEMTLKQFL_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-SECPEP	A375_MHC_IP_R1	1	570.1378173828125	2	569.794275	1137.574	-0.40877	-0.00023291	-0.090478	-5.1554E-05	-0.49925	-0.00028447	569.7944510823556	94.266	0.50779	94.266	94.041	94.548	0					11	9	2	0	0	0	0.38578	1	34695	34695		41.84	22.583	1	804870			9625	4297	6787	6847	9416	9416					0.010712326772136294
EEMTPKQTL	9	Unmodified	_EEMTPKQTL_					0	0	0			REV__ENST00000487296.1_1_6:32815233-32815866:-|nuORF	REV__ENST00000487296.1_1_6:32815233-32815866:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	359.92919921875	3	359.514597	1075.52196	-0.55803	-0.00020062	-1.8637	-0.00067004	-2.4218	-0.00087066	359.513723885242	26.657	0.76321	27.317	26.805	27.568	0.65992					30	14	4	0	0	0	0.65246	1	9096	9096		15.248	5.1746	1	2603400	+		9626	20851	6788	6848	9417	9417					-0.012779307365462955
EEMWDERLSRI	11	Unmodified	_EEMWDERLSRI_					0	0	0		MYH6|p.R779W|1|0.34|ENSG00000197616|chr14:23396378-23396378|G/A|missense_variant	MYH6|p.R779W|1|0.34|ENSG00000197616|chr14:23396378-23396378|G/A|missense_variant	MYH6|p.R779W|1|0.34|ENSG00000197616|chr14:23396378-23396378|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	488.4692077636719	3	488.569764	1462.68746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.562	1	56.313	55.813	56.813	0.75075								0	0	0	0.16338	1	20991	20991		1.1098	0.65524	1				9627	14435	6789	6849	9418	9418					-0.025373239476948584
EEMYDIFGKY	10	Unmodified	_EEMYDIFGKY_					0	0	0		ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF	ENSG00000115128|ENST00000233468|SF3B6	ENSG00000115128|ENST00000233468|SF3B6	MULTI-SECPEP	A375_MHC_IP_R1	1	648.1859741210938	2	647.786647	1293.55874	-0.31702	-0.00020536	-0.1979	-0.0001282	-0.51492	-0.00033356	647.7864565801862	100.24	0.55734	100.24	100.03	100.58	0					20	10	3	0	0	0	0.32288	1	36831	36831		59.368	44.53	1	4242600			9628	3272	6790	6850	9419	9419					-0.07629678910643634
EEMYDIFGKY	10	Unmodified	_EEMYDIFGKY_					0	0	0		ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF	ENSG00000115128|ENST00000233468|SF3B6	ENSG00000115128|ENST00000233468|SF3B6	MULTI-MSMS	A375_MHC_IP_R2	2	648.187744140625	2	647.786647	1293.55874	-0.42286	-0.00027392	-0.53387	-0.00034583	-0.95673	-0.00061976	647.7863563236612	99.639	0.7114	100.4	100.02	100.73	0.76278					33	13	4	0	0	0	0.013372	1	37765	37765		90.135	68.598	1	5029000			9629	3272	6790	6850	9420	9420					-0.07629678910643634
EEMYDIFGKY	10	Oxidation (M)	_EEM(Oxidation (M))YDIFGKY_		EEM(1)YDIFGKY		EEM(56)YDIFGKY	0	0	1		ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF	ENSG00000115128|ENST00000233468|SF3B6	ENSG00000115128|ENST00000233468|SF3B6	MULTI-MSMS	A375_MHC_IP_R2	2	656.1834716796875	2	655.784104	1309.55365	-0.9676	-0.00063454	0.033612	2.2043E-05	-0.93399	-0.0006125	655.7841834226681	81.283	0.50669	82.027	81.724	82.231	0.74474					24	9	3	0	0	0	0.13881	1	30905	30905		55.503	38.39	1	2959600			9630	3272	6790	6851	9421	9421		158			-0.08873982773275202
EEMYDIFGKY	10	Oxidation (M)	_EEM(Oxidation (M))YDIFGKY_					0	0	1		ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF	ENSG00000115128|ENST00000233468|SF3B6	ENSG00000115128|ENST00000233468|SF3B6	MULTI-MATCH	A375_MHC_IP_R1	1		2	655.784104	1309.55365	-0.35367	-0.00023193	-0.13677	-8.9694E-05	-0.49045	-0.00032163	655.7841123298	81.807	0.60706	81.807	81.556	82.163	0	-0.11004	-6.9879E-05	NaN	55.503	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2476300			9631	3272	6790	6851				158			-0.08873982773275202
EENASELQAY	10	Unmodified	_EENASELQAY_					0	0	0		chr8:47798382-47799210|156|26.05|0.6|5.45|-|2|None,PRKDC|1	chr8:47798382-47799210|156|26.05|0.6|5.45|-|2|None,PRKDC|1	chr8:47798382-47799210|156|26.05|0.6|5.45|-|2|None,PRKDC|1	MULTI-MSMS	A375_MHC_IP_R1	1	577.654052734375	2	577.254025	1152.4935	-0.5179	-0.00029896	0.27525	0.00015889	-0.24266	-0.00014007	577.2544115259449	30.111	0.45324	30.111	29.949	30.402	0					16	8	3	0	0	0	0.52785	1	9548	9548		26.268	8.8255	1	5930400			9632	508	6791	6852	9422	9422					-0.07664957112137927
EENASELQAY	10	Unmodified	_EENASELQAY_					0	0	0		chr8:47798382-47799210|156|26.05|0.6|5.45|-|2|None,PRKDC|1	chr8:47798382-47799210|156|26.05|0.6|5.45|-|2|None,PRKDC|1	chr8:47798382-47799210|156|26.05|0.6|5.45|-|2|None,PRKDC|1	MULTI-MSMS	A375_MHC_IP_R2	2	577.653564453125	2	577.254025	1152.4935	-0.86077	-0.00049689	-0.023711	-1.3687E-05	-0.88449	-0.00051057	577.2540973006862	29.448	0.60692	30.146	29.981	30.588	0.69872					23	11	3	0	0	0	0.30287	1	10298	10298		39.95	20.324	1	5593300			9633	508	6791	6852	9423	9423					-0.07664957112137927
EENAVDVKQY	10	Unmodified	_EENAVDVKQY_					0	0	0		ENSG00000217128|ENST00000510461|FNIP1;nc|ENSG00000217128|Q8TF40-3|FNIP1	ENSG00000217128|ENST00000510461|FNIP1	ENSG00000217128|ENST00000510461|FNIP1	MULTI-SECPEP	A375_MHC_IP_R1	1	598.1851196289062	2	597.785492	1193.55643	-0.42175	-0.00025212	0.0067185	4.0162E-06	-0.41504	-0.0002481	597.7855269346267	31.338	0.45622	31.338	31.16	31.616	0					14	8	2	0	0	0	0.015205	1	10057	10057		169.92	133.8	1	4902500			9634	9653	6792	6853	9424	9424					-0.03260391324079137
EENAVDVKQY	10	Unmodified	_EENAVDVKQY_					0	0	0		ENSG00000217128|ENST00000510461|FNIP1;nc|ENSG00000217128|Q8TF40-3|FNIP1	ENSG00000217128|ENST00000510461|FNIP1	ENSG00000217128|ENST00000510461|FNIP1	MULTI-SECPEP	A375_MHC_IP_R2	2	598.185302734375	2	597.785492	1193.55643	-0.57744	-0.00034519	0.033226	1.9862E-05	-0.54422	-0.00032532	597.7856025675745	30.773	0.40305	31.491	31.266	31.669	0.71857					12	7	2	0	0	0	0.015666	1	10850	10850		185.27	143.43	1	4294500			9635	9653	6792	6853	9425	9425					-0.03260391324079137
EENAVWIRI	9	Unmodified	_EENAVWIRI_					0	0	0		nc|ENSG00000166451|Q96H22-2|CENPN;nc|ENSG00000166451|Q96H22-5|CENPN;ENSG00000166451|ENST00000305850|CENPN;nc|ENSG00000166451|Q96H22-3|CENPN;nc|ENSG00000166451|Q96H22-4|CENPN	nc|ENSG00000166451|Q96H22-2|CENPN	nc|ENSG00000166451|Q96H22-2|CENPN	MULTI-SECPEP	A375_MHC_IP_R1	1	565.7037963867188	2	565.303655	1128.59276	-0.62641	-0.00035411	0.71314	0.00040314	0.086728	4.9028E-05	565.3041204592529	90.574	0.50876	90.574	90.285	90.794	0					19	9	3	0	0	0	0.32966	1	33304	33304		62.573	39.424	1	2318000			9636	7074	6793	6854	9426	9426					0.03360530363283942
EENAVWIRI	9	Unmodified	_EENAVWIRI_					0	0	0		nc|ENSG00000166451|Q96H22-2|CENPN;nc|ENSG00000166451|Q96H22-5|CENPN;ENSG00000166451|ENST00000305850|CENPN;nc|ENSG00000166451|Q96H22-3|CENPN;nc|ENSG00000166451|Q96H22-4|CENPN	nc|ENSG00000166451|Q96H22-2|CENPN	nc|ENSG00000166451|Q96H22-2|CENPN	MULTI-MSMS	A375_MHC_IP_R2	2	564.759033203125	2	565.303655	1128.59276	-0.36221	-0.00020476	0.92754	0.00052434	0.56533	0.00031958	565.3045570284083	89.76	0.61539	90.492	90.186	90.801	0.7318					20	11	2	0	0	0	0.28079	1	34130	34130		41.84	31.016	1	2040400			9637	7074	6793	6854	9427	9427					0.03360530363283942
EENCDIFQNL	10	Unmodified	_EENCDIFQNL_					0	0	0		ENSG00000113448|ENST00000340635|PDE4D;nc|ENSG00000113448|Q08499-5|PDE4D;nc|ENSG00000113448|Q08499-8|PDE4D;nc|ENSG00000113448|Q08499-4|PDE4D;nc|ENSG00000113448|Q08499-3|PDE4D;nc|ENSG00000113448|Q08499-2|PDE4D;nc|ENSG00000113448|Q08499-10|PDE4D;nc|ENSG00000113448|Q08499-9|PDE4D;nc|ENSG00000113448|Q08499-6|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D	ENSG00000113448|ENST00000340635|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D	ENSG00000113448|ENST00000340635|PDE4D	MULTI-MSMS	A375_MHC_IP_R1	1	612.7164916992188	2	612.763703	1223.51285	-0.20053	-0.00012288	-2.0547	-0.0012591	-2.2553	-0.0013819	612.7615963255207	44.125	0.56186	44.125	43.909	44.471	0					21	10	3	0	0	0	0.6806	1	15348	15348		14.838	3.3436	1	2395800			9638	3152;14554	6794	6855	9428	9428					-0.08996324092890973
EENCDIFQNL	10	Unmodified	_EENCDIFQNL_					0	0	0		ENSG00000113448|ENST00000340635|PDE4D;nc|ENSG00000113448|Q08499-5|PDE4D;nc|ENSG00000113448|Q08499-8|PDE4D;nc|ENSG00000113448|Q08499-4|PDE4D;nc|ENSG00000113448|Q08499-3|PDE4D;nc|ENSG00000113448|Q08499-2|PDE4D;nc|ENSG00000113448|Q08499-10|PDE4D;nc|ENSG00000113448|Q08499-9|PDE4D;nc|ENSG00000113448|Q08499-6|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D	ENSG00000113448|ENST00000340635|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D	ENSG00000113448|ENST00000340635|PDE4D	MULTI-MATCH	A375_MHC_IP_R2	2		2	612.763703	1223.51285	-0.41067	-0.00025164	-2.6936	-0.0016505	-3.1042	-0.0019022	612.7618653046184	43.291	0.45641	44.064	43.876	44.333	0.7724	-0.03056	-0.00018116	NaN	14.838	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2170200			9639	3152;14554	6794	6855							-0.08996324092890973
EENCSTHEVS	10	Unmodified	_EENCSTHEVS_					0	0	0			REV__ENSG00000164252|ENST00000312916|AGGF1	REV__ENSG00000164252|ENST00000312916|AGGF1	MSMS	A375_MHC_IP_R1	1	567.7291870117188	2	567.722035	1133.42952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.21	1	125.21	124.71	125.71	0								0	0	0	0.1552	1	47508	47508		3.9444	1.8846	1		+		9640	20471	6795	6856	9429	9429					-0.13186060540715516
EENCVKEWY	9	Carbamidomethyl (C)	_EENC(Carbamidomethyl (C))VKEWY_	EENC(1)VKEWY		EENC(120)VKEWY		0	1	0		ENST00000264896.7_2_4:77116994-77134841:-|nuORF	ENST00000264896.7_2_4:77116994-77134841:-|nuORF	ENST00000264896.7_2_4:77116994-77134841:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	629.1660766601562	2	628.766245	1255.51794	-0.20376	-0.00012812	0.072883	4.5826E-05	-0.13088	-8.2293E-05	628.76622774487	49.446	0.50796	49.446	49.184	49.692	0					18	9	3	0	0	0	0.0098859	1	17467	17467		117.76	71.74	1	3247100			9641	10340	6796	6857	9430	9430	53				-0.09960020230255395
EENCVKEWY	9	Carbamidomethyl (C)	_EENC(Carbamidomethyl (C))VKEWY_	EENC(1)VKEWY		EENC(95)VKEWY		0	1	0		ENST00000264896.7_2_4:77116994-77134841:-|nuORF	ENST00000264896.7_2_4:77116994-77134841:-|nuORF	ENST00000264896.7_2_4:77116994-77134841:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	629.1654052734375	2	628.766245	1255.51794	-0.91191	-0.00057338	-0.040643	-2.5555E-05	-0.95255	-0.00059893	628.7662028511315	48.735	0.50984	49.492	49.282	49.792	0.75737					15	9	2	0	0	0	0.0111	1	18314	18314		94.909	70.888	1	3656200			9642	10340	6796	6857	9431	9431	53				-0.09960020230255395
EENDIYPQI	9	Unmodified	_EENDIYPQI_					0	0	0			REV__ENSG00000114841|ENST00000420323|DNAH1	REV__ENSG00000114841|ENST00000420323|DNAH1	MSMS	A375_MHC_IP_R2	2	560.674072265625	2	560.761486	1119.50842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.098	1	44.867	44.367	45.367	0.7691								0	0	0	0.14359	1	16449	16449		28.487	10.352	1		+		9643	17843	6797	6858	9432	9432					-0.046554652441500366
EENDKKRAE	9	Unmodified	_EENDKKRAE_					0	0	0		nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	MSMS	A375_MHC_IP_R1	1	559.690185546875	2	559.775459	1117.53637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.966	1	56.966	56.466	57.466	0								0	0	0	0.14677	1	20420	20420		26.884	3.7352	1				9644	971	6798	6859	9433	9433					-0.017701422640357123
EENEAPQHRDA	11	Unmodified	_EENEAPQHRDA_					0	0	0		ERICH3|p.D778N|1|0.19|ENSG00000178965|chr1:74573378-74573378|C/T|missense_variant	ERICH3|p.D778N|1|0.19|ENSG00000178965|chr1:74573378-74573378|C/T|missense_variant	ERICH3|p.D778N|1|0.19|ENSG00000178965|chr1:74573378-74573378|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	648.1987915039062	2	648.28418	1294.55381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.183	1	42.183	41.683	42.683	0								0	0	0	0.12155	1	14604	14604		31.268	11.906	1				9645	13958	6799	6860	9434	9434					-0.08168846729063262
EENEDFTYDY	10	Unmodified	_EENEDFTYDY_					0	0	0			REV__TLL1|p.G39E|1|0.42|ENSG00000038295|chr4:165874020-165874020|G/A|missense_variant	REV__TLL1|p.G39E|1|0.42|ENSG00000038295|chr4:165874020-165874020|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	441.9901123046875	3	442.166579	1323.47791	-0.13342	-5.8995E-05	1.0877	0.00048092	0.95423	0.00042193	442.50107245148956	33.279	0.30508	33.279	33.14	33.445	0					8	5	2	0	0	0	0.94269	1	10811	10811		3.3196	0.47636	1	3505400	+		9646	28118	6800	6861	9435	9435					-0.17089288419833792
EENEEEQQSFF	11	Unmodified	_EENEEEQQSFF_					0	0	0			REV__ENST00000367712.2_1_1:173628194-173628566:-|nuORF	REV__ENST00000367712.2_1_1:173628194-173628566:-|nuORF	MSMS	A375_MHC_IP_R2	2	708.2186889648438	2	708.283511	1414.55247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.864	1	81.609	81.109	82.109	0.74474								0	0	0	0.1624	1	30705	30705		6.2058	0.47393	1		+		9647	21784	6801	6862	9436	9436					-0.13822525608497926
EENEFILY	8	Unmodified	_EENEFILY_					0	0	0		ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	MSMS	A375_MHC_IP_R1	1	528.6953125	2	528.747847	1055.48114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.583	1	31.583	31.083	32.083	0								0	0	0	0.16876	1	10123	10123		19.439	5.9311	1				9648	4901	6802	6863	9437	9437					-0.044379487844935284
EENEFILY	8	Unmodified	_EENEFILY_					0	0	0		ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	MSMS	A375_MHC_IP_R2	2	528.6952514648438	2	528.747847	1055.48114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.91	1	31.628	31.128	32.128	0.71857								0	0	0	0.16876	1	10896	10896		19.439	5.9311	1				9649	4901	6802	6863	9438	9438					-0.044379487844935284
EENEGYAKL	9	Unmodified	_EENEGYAKL_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-SECPEP	A375_MHC_IP_R1	1	526.1820068359375	2	526.748379	1051.4822	-0.48902	-0.00025759	3.6837	0.0019404	3.1947	0.0016828	526.7482424913064	31.837	0.51056	31.837	31.565	32.075	0					26	9	4	0	0	0	0.5212	1	10287	10287		26.268	13.737	1	3399900			9650	3978	6803	6864	9439	9439					-0.041477344156191975
EENEKLLKEY	10	Unmodified	_EENEKLLKEY_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-MSMS	A375_MHC_IP_R1	1	432.6221618652344	3	432.222359	1293.64525	-0.3637	-0.0001572	0.079068	3.4175E-05	-0.28463	-0.00012302	432.2223319473917	32.854	0.55491	32.854	32.585	33.14	0					27	10	5	0	0	0	0.07753	1	10641	10641		68.484	39.047	1	22698000			9651	9362	6804	6865	9440	9440					0.010170239155968375
EENEKLLKEY	10	Unmodified	_EENEKLLKEY_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-SECPEP	A375_MHC_IP_R1	1	648.2294921875	2	647.8299	1293.64525	-0.53511	-0.00034666	-0.30172	-0.00019547	-0.83683	-0.00054213	647.8296216369357	32.837	0.35518	32.837	32.684	33.04	0					19	6	4	0	0	0	0.014039	1	10651	10651		146.68	77.575	1	8702400			9652	9362	6804	6865	9441	9441					0.010170239155968375
EENEKLLKEY	10	Unmodified	_EENEKLLKEY_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-MSMS	A375_MHC_IP_R2	2	432.62225341796875	3	432.222359	1293.64525	-0.25305	-0.00010937	0.0118	5.1004E-06	-0.24125	-0.00010427	432.22231007200634	32.123	0.50769	32.86	32.654	33.162	0.73691					26	9	4	0	0	0	0.022052	1	11392	11392		84.06	40.583	1	22064000			9653	9362	6804	6865	9442	9442					0.010170239155968375
EENEKLLKEY	10	Unmodified	_EENEKLLKEY_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-SECPEP	A375_MHC_IP_R2	2	648.2295532226562	2	647.8299	1293.64525	-0.68294	-0.00044243	0.10699	6.9309E-05	-0.57595	-0.00037312	647.8299591170912	32.125	0.55886	32.862	32.654	33.213	0.73692					16	10	3	0	0	0	0.017816	1	11417	11417		132.57	71.477	1	5521400			9654	9362	6804	6865	9443	9443					0.010170239155968375
EENETLVEF	9	Unmodified	_EENETLVEF_					0	0	0		ENSG00000125449|ENST00000245543|ARMC7	ENSG00000125449|ENST00000245543|ARMC7	ENSG00000125449|ENST00000245543|ARMC7	MULTI-SECPEP	A375_MHC_IP_R1	1	555.6531982421875	2	555.253494	1108.49243	-0.48812	-0.00027103	0.58823	0.00032662	0.10011	5.5588E-05	555.2533876357896	93.624	0.4079	93.624	93.381	93.789	0					11	7	2	0	0	0	0.63327	1	34459	34459		18.146	8.0724	1	1003000			9655	3963	6805	6866	9444	9444					-0.05747171481039004
EENFDNYW	8	Unmodified	_EENFDNYW_					0	0	0		ENST00000526769.3_1_11:6735844-6741409:-|nuORF;nc|ENSG00000254838|Q7Z2Y8|GVINP1	ENST00000526769.3_1_11:6735844-6741409:-|nuORF	ENST00000526769.3_1_11:6735844-6741409:-|nuORF	MSMS	A375_MHC_IP_R1	1	558.7142333984375	2	558.717079	1115.4196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.903	1	56.903	56.403	57.403	0								0	0	0	0.16876	1	20397	20397		10.183	1.5901	1				9656	13088	6806	6867	9445	9445					-0.13348880483817993
EENFEKQEQ	9	Unmodified	_EENFEKQEQ_					0	0	0		FSD2|p.G249E|1|0.3|ENSG00000186628|chr15:82783015-82783015|C/T|missense_variant	FSD2|p.G249E|1|0.3|ENSG00000186628|chr15:82783015-82783015|C/T|missense_variant	FSD2|p.G249E|1|0.3|ENSG00000186628|chr15:82783015-82783015|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	591.1775512695312	2	590.759475	1179.5044	-0.1154	-6.8172E-05	0.12015	7.0979E-05	0.0047523	2.8075E-06	590.7592967388991	35.62	0.35778	35.62	35.472	35.83	0					9	6	2	0	0	0	0.65246	1	11854	11854		15.847	3.6065	1	853790			9657	14023	6807	6868	9446	9446					-0.07817554737835053
EENFRDRGF	9	Unmodified	_EENFRDRGF_					0	0	0		ENST00000469451.1_1_1:203830997-203832824:+|nuORF	ENST00000469451.1_1_1:203830997-203832824:+|nuORF	ENST00000469451.1_1_1:203830997-203832824:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	390.9413146972656	3	390.515988	1168.52613	-0.23636	-9.2304E-05	0.65102	0.00025423	0.41466	0.00016193	390.5163547231826	29.207	0.3575	29.207	28.945	29.302	0					9	6	2	0	0	0	0.76642	1	9091	9091		8.9762	8.9762	1	1831300			9658	12318	6808	6869	9447	9447					-0.051387051986239385
EENFSRPQI	9	Unmodified	_EENFSRPQI_					0	0	0		ENSG00000168724|ENST00000648817|DNAJC21;nc|ENSG00000168724|Q5F1R6-3|DNAJC21;nc|ENSG00000168724|Q5F1R6-2|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	MULTI-SECPEP	A375_MHC_IP_R1	1	560.6746826171875	2	560.275095	1118.53564	0.085702	4.8016E-05	-0.80378	-0.00045034	-0.71808	-0.00040232	560.2743929112438	44.924	0.55707	44.924	44.626	45.183	0					19	10	2	0	0	0	0.03341	1	15672	15672		103.42	57.72	1	6078600			9659	7337	6809	6870	9448	9448					-0.01888936913087491
EENFSRPQI	9	Unmodified	_EENFSRPQI_					0	0	0		ENSG00000168724|ENST00000648817|DNAJC21;nc|ENSG00000168724|Q5F1R6-3|DNAJC21;nc|ENSG00000168724|Q5F1R6-2|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	MULTI-SECPEP	A375_MHC_IP_R2	2	560.674072265625	2	560.275095	1118.53564	-0.5217	-0.0002923	-0.96559	-0.000541	-1.4873	-0.00083329	560.2744831934668	44.14	0.95967	44.909	44.329	45.289	0.7691					35	18	3	0	0	0	0.019499	1	16449	16449		103.42	72.151	1	9151900			9660	7337	6809	6870	9449	9449					-0.01888936913087491
EENFWMVMVFT	11	Unmodified	_EENFWMVMVFT_					0	0	0		ENST00000464543.1_1_7:6864046-6865828:-|nuORF;ENST00000478672.1_1_7:5938430-5940236:+|nuORF;ENST00000486840.1_1_7:6864046-6864211:-|nuORF	ENST00000464543.1_1_7:6864046-6865828:-|nuORF	ENST00000464543.1_1_7:6864046-6865828:-|nuORF	MSMS	A375_MHC_IP_R2	2	716.7169799804688	2	716.817424	1431.62029	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.036	1	81.781	81.281	82.281	0.74474								0	0	0	0.16108	1	30772	30772		13.042	3.6593	1				9661	12227	6810	6871	9450	9450					-0.078250704830225
EENGTAAITF	10	Unmodified	_EENGTAAITF_					0	0	0		ENSG00000119953|ENST00000369603|SMNDC1	ENSG00000119953|ENST00000369603|SMNDC1	ENSG00000119953|ENST00000369603|SMNDC1	MULTI-MSMS	A375_MHC_IP_R1	1	527.1482543945312	2	526.748379	1051.4822	-0.53804	-0.00028341	0.225	0.00011852	-0.31304	-0.00016489	526.7485128835561	76.07	0.909	76.07	75.815	76.724	0					22	17	2	0	0	0	0.19329	1	27743	27743		49.933	15.531	1	1672800			9662	3640	6811	6872	9451	9451					-0.04147734415641935
EENGTAAITF	10	Unmodified	_EENGTAAITF_					0	0	0		ENSG00000119953|ENST00000369603|SMNDC1	ENSG00000119953|ENST00000369603|SMNDC1	ENSG00000119953|ENST00000369603|SMNDC1	MULTI-MSMS	A375_MHC_IP_R2	2	527.1478881835938	2	526.748379	1051.4822	-0.48428	-0.0002551	0.023031	1.2131E-05	-0.46125	-0.00024296	526.7482834140761	75.363	0.71274	76.103	75.775	76.487	0.74052					25	13	3	0	0	0	0.27246	1	28625	28625		41.84	14.956	1	2816600			9663	3640	6811	6872	9452	9452					-0.04147734415641935
EENHTSWRF	9	Unmodified	_EENHTSWRF_					0	0	0		ENST00000608178.5_1_4:141282024-141282105:-|nuORF	ENST00000608178.5_1_4:141282024-141282105:-|nuORF	ENST00000608178.5_1_4:141282024-141282105:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	402.9429016113281	3	402.515988	1204.52613	-0.37462	-0.00015079	-1.1831	-0.00047622	-1.5577	-0.00062701	402.5152114569458	38.53	0.35453	39.305	39.098	39.453	0.77451					10	6	2	0	0	0	0.74597	1	14203	14203		12.175	10.432	1	832730			9664	13926	6812	6873	9453	9453					-0.06794705198649353
EENILLLRK	9	Unmodified	_EENILLLRK_					0	0	0		ENSG00000165617|ENST00000395153|DACT1;nc|ENSG00000165617|Q9NYF0|DACT1	ENSG00000165617|ENST00000395153|DACT1	ENSG00000165617|ENST00000395153|DACT1	MSMS	A375_MHC_IP_R2	2	376.6290588378906	3	376.564279	1126.67101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.683	1	55.434	54.934	55.934	0.75075								0	0	0	0.15331	1	20640	20640		16.149	0	1				9665	6970	6813	6874	9454	9454					0.11273962948507688
EENIPENPLR	10	Unmodified	_EENIPENPLR_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MSMS	A375_MHC_IP_R2	2	605.7288818359375	2	605.806759	1209.59897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.297	1	57.047	56.547	57.547	0.75015								0	0	0	0.15158	1	21278	21278		14.838	0.93222	1				9666	7523	6814	6875	9455	9455					0.002550038041363223
EENKLVKKI	9	Unmodified	_EENKLVKKI_					0	0	0		ENSG00000122545|ENST00000350320|SEPTIN7;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENSG00000122545|ENST00000350320|SEPTIN7	ENSG00000122545|ENST00000350320|SEPTIN7	MULTI-SECPEP	A375_MHC_IP_R1	1	367.96063232421875	3	367.560646	1099.66011	0.1605	5.8993E-05	0.34222	0.00012579	0.50272	0.00018478	367.5607570866862	19.602	0.56	19.602	19.368	19.928	0					40	10	5	0	0	0	0.05021	1	4882	4882		80.676	19.586	1	174140000			9667	3789	6815	6876	9456	9456					0.11426560574227551
EENKLVKKI	9	Unmodified	_EENKLVKKI_					0	0	0		ENSG00000122545|ENST00000350320|SEPTIN7;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENSG00000122545|ENST00000350320|SEPTIN7	ENSG00000122545|ENST00000350320|SEPTIN7	MULTI-SECPEP	A375_MHC_IP_R1	1	367.9605407714844	3	367.560646	1099.66011	0.57551	0.00021153	-0.24466	-8.9926E-05	0.33085	0.00012161	367.560512017136	21.886	0.86399	21.886	21.555	22.419	0					32	16	3	0	0	0	0.11711	1	5816	5816		55.235	25.954	1	9573100			9668	3789	6815	6876	9457	9457					0.11426560574227551
EENKLVKKI	9	Unmodified	_EENKLVKKI_					0	0	0		ENSG00000122545|ENST00000350320|SEPTIN7;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENSG00000122545|ENST00000350320|SEPTIN7	ENSG00000122545|ENST00000350320|SEPTIN7	MULTI-SECPEP	A375_MHC_IP_R1	1	551.237060546875	2	550.837331	1099.66011	-0.64745	-0.00035664	0.25876	0.00014254	-0.38869	-0.00021411	550.837403877364	19.598	0.40699	19.598	19.42	19.827	0					22	7	4	0	0	0	0.011256	1	4910	4910		121.35	66.111	1	11184000			9669	3789	6815	6876	9458	9458					0.11426560574227551
EENKLVKKI	9	Unmodified	_EENKLVKKI_					0	0	0		ENSG00000122545|ENST00000350320|SEPTIN7;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENSG00000122545|ENST00000350320|SEPTIN7	ENSG00000122545|ENST00000350320|SEPTIN7	MULTI-MSMS	A375_MHC_IP_R2	2	367.9605407714844	3	367.560646	1099.66011	-0.16901	-6.2121E-05	-0.0022097	-8.1219E-07	-0.17122	-6.2933E-05	367.5605802460564	21.386	0.56055	22.005	21.878	22.439	0.61932					17	10	2	0	0	0	0.56584	1	6752	6752		16.566	0.29133	1	6890100			9670	3789	6815	6876	9459	9459					0.11426560574227551
EENKLVKKI	9	Unmodified	_EENKLVKKI_					0	0	0		ENSG00000122545|ENST00000350320|SEPTIN7;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENSG00000122545|ENST00000350320|SEPTIN7	ENSG00000122545|ENST00000350320|SEPTIN7	MULTI-SECPEP	A375_MHC_IP_R2	2	551.2369384765625	2	550.837331	1099.66011	-1.0462	-0.00057631	0.016941	9.3319E-06	-1.0293	-0.00056698	550.8374155592909	18.905	0.18035	19.508	19.452	19.633	0.60308					5	3	2	0	0	0	0.50702	1	5740	5740		19.257	8.4575	1	11053000			9671	3789	6815	6876	9460	9460					0.11426560574227551
EENKVIAGF	9	Unmodified	_EENKVIAGF_					0	0	0		VAT1L|p.S317F|1|0.23|ENSG00000171724|chr16:77884675-77884675|C/T|missense_variant;ENSG00000171724|ENST00000302536|VAT1L	VAT1L|p.S317F|1|0.23|ENSG00000171724|chr16:77884675-77884675|C/T|missense_variant	VAT1L|p.S317F|1|0.23|ENSG00000171724|chr16:77884675-77884675|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	504.163818359375	2	503.763832	1005.51311	-0.16358	-8.2407E-05	-0.05425	-2.7329E-05	-0.21783	-0.00010974	503.7637425225859	54.038	0.96344	54.038	53.707	54.67	0					42	18	3	0	0	0	0.011405	1	19224	19224		122.18	67.406	1	45688000			9672	7633	6816	6877	9461	9461					0.010574636892897615
EENKVIAGF	9	Unmodified	_EENKVIAGF_					0	0	0		VAT1L|p.S317F|1|0.23|ENSG00000171724|chr16:77884675-77884675|C/T|missense_variant;ENSG00000171724|ENST00000302536|VAT1L	VAT1L|p.S317F|1|0.23|ENSG00000171724|chr16:77884675-77884675|C/T|missense_variant	VAT1L|p.S317F|1|0.23|ENSG00000171724|chr16:77884675-77884675|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1634826660156	2	503.763832	1005.51311	-1.2512	-0.00063033	0.5975	0.000301	-0.65373	-0.00032933	503.76408293303956	53.222	1.0226	53.973	53.638	54.661	0.75105					42	19	3	0	0	0	0.011107	1	20022	20022		122.18	76.158	1	40596000			9673	7633	6816	6877	9462	9462					0.010574636892897615
EENLLFYSV	9	Unmodified	_EENLLFYSV_					0	0	0		ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	MULTI-MSMS	A375_MHC_IP_R1	1	557.7470703125	2	557.276772	1112.53899	-0.64112	-0.00035728	2.7672	0.0015421	2.1261	0.0011848	557.2796805272347	65.3	1.4763	65.3	64.546	66.022	0					50	28	3	0	0	0	0.32899	1	23395	23395		28.487	9.2299	1	7471000			9674	6160	6817	6878	9463	9463					-0.012776868590890444
EENLLLVQTE	10	Unmodified	_EENLLLVQTE_					0	0	0		ENST00000371160.5_1_X:123159712-123164898:+|nuORF	ENST00000371160.5_1_X:123159712-123164898:+|nuORF	ENST00000371160.5_1_X:123159712-123164898:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	594.23681640625	2	594.311343	1186.60813	-0.80717	-0.00047971	0.54206	0.00032215	-0.26511	-0.00015756	594.3116508676991	38.02	0.31008	38.795	38.636	38.946	0.77451					9	5	2	0	0	0	0.69833	1	13920	13920		13.042	3.6593	1	1975000			9675	11167	6818	6879	9464	9464					0.02229352369818116
EENLLSDIFL	10	Unmodified	_EENLLSDIFL_					0	0	0			REV__ENSG00000175445|ENST00000650287|LPL	REV__ENSG00000175445|ENST00000650287|LPL	MULTI-MSMS	A375_MHC_IP_R1	1	597.9232177734375	2	596.808436	1191.60232	-0.51959	-0.0003101	0.029363	1.7524E-05	-0.49023	-0.00029257	596.8083299559983	87.058	1.1169	87.058	86.527	87.644	0					66	21	4	0	0	0	0.27246	1	31944	31944		41.84	5.7126	1	50390000	+		9676	21344	6819	6880	9465	9465					0.014182538581280824
EENLLSDIFL	10	Unmodified	_EENLLSDIFL_					0	0	0			REV__ENSG00000175445|ENST00000650287|LPL	REV__ENSG00000175445|ENST00000650287|LPL	MULTI-SECPEP	A375_MHC_IP_R1	1	596.064697265625	2	596.808436	1191.60232	-0.51959	-0.0003101	0.029363	1.7524E-05	-0.49023	-0.00029257	596.8083299559983	87.058	1.1169	87.058	86.527	87.644	0					66	21	4	0	0	0	0.6774	1	31905	31905		34.402	5.3201	1	50390000	+		9677	21344	6819	6880	9466	9466					0.014182538581280824
EENLLSDIFL	10	Unmodified	_EENLLSDIFL_					0	0	0			REV__ENSG00000175445|ENST00000650287|LPL	REV__ENSG00000175445|ENST00000650287|LPL	MULTI-SECPEP	A375_MHC_IP_R1	1	597.2078857421875	2	596.808436	1191.60232	-0.4173	-0.00024905	0.17772	0.00010606	-0.23958	-0.00014298	596.8084207023558	89.583	0.76001	89.583	89.12	89.88	0					33	14	3	0	0	0	0.83355	1	32851	32851		17.113	0	1	9433900	+		9678	21344	6819	6880	9467	9467					0.014182538581280824
EENLLSDIFL	10	Unmodified	_EENLLSDIFL_					0	0	0			REV__ENSG00000175445|ENST00000650287|LPL	REV__ENSG00000175445|ENST00000650287|LPL	MULTI-SECPEP	A375_MHC_IP_R2	2	597.208740234375	2	596.808436	1191.60232	-0.40277	-0.00024038	0.2293	0.00013685	-0.17347	-0.00010353	596.8084221340644	86.187	1.2224	86.92	86.287	87.509	0.733					75	23	5	0	0	0	0.56504	1	32665	32665		41.84	5.7126	1	43998000	+		9679	21344	6819	6880	9468	9468					0.014182538581280824
EENLQVMRF	9	Unmodified	_EENLQVMRF_					0	0	0		nc|ENSG00000137807|Q02241-3|KIF23;nc|ENSG00000137807|Q02241-2|KIF23;chr15:69446091-69446286|457|11.77|0.5|4.56|+|ENST00000395392|KIF23,KIF23;nc|ENSG00000137807|Q02241|KIF23;ENSG00000137807|ENST00000679126|KIF23	nc|ENSG00000137807|Q02241-3|KIF23	nc|ENSG00000137807|Q02241-3|KIF23	MULTI-MSMS	A375_MHC_IP_R1	1	583.9805297851562	2	583.287148	1164.55974	-0.23582	-0.00013755	-0.67591	-0.00039425	-0.91173	-0.0005318	583.2862391374258	74.501	0.25378	74.501	74.4	74.653	0					7	4	2	0	0	0	0.10411	1	27140	27140		49.933	29.479	1	536920			9680	438	6820	6881	9469	9469					-0.01595419751083682
EENLVERTGLL	11	Unmodified	_EENLVERTGLL_					0	0	0			REV__ENSG00000123983|ENST00000357430|ACSL3	REV__ENSG00000123983|ENST00000357430|ACSL3	MULTI-MSMS	A375_MHC_IP_R1	1	637.2427978515625	2	636.843342	1271.67213	-0.67913	-0.0004325	0.35621	0.00022685	-0.32293	-0.00020565	636.8434836541157	63.816	0.50986	63.816	63.58	64.09	0					21	9	3	0	0	0	0.028256	1	23073	23073		83.429	29.596	1	5342800	+		9681	18265	6821	6882	9470	9470					0.047161325267552456
EENLVERTGLL	11	Unmodified	_EENLVERTGLL_					0	0	0			REV__ENSG00000123983|ENST00000357430|ACSL3	REV__ENSG00000123983|ENST00000357430|ACSL3	MULTI-MSMS	A375_MHC_IP_R2	2	637.2430419921875	2	636.843342	1271.67213	-0.73754	-0.0004697	0.22897	0.00014582	-0.50857	-0.00032388	636.8435238834843	63.038	0.50636	63.78	63.534	64.04	0.74263					21	9	3	0	0	0	0.12606	1	23913	23913		65.474	9.2966	1	3845500	+		9682	18265	6821	6882	9471	9471					0.047161325267552456
EENLVERTGLL	11	Unmodified	_EENLVERTGLL_					0	0	0			REV__ENSG00000123983|ENST00000357430|ACSL3	REV__ENSG00000123983|ENST00000357430|ACSL3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	636.843342	1271.67213	-0.67913	-0.0004325	0.35621	0.00022685	-0.32293	-0.00020565	636.8434836541157	63.816	0.50986	63.816	63.58	64.09	0	0.017607	0.000109	NaN	83.429	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5342800	+		9683	18265	6821	6882							0.047161325267552456
EENLVERTGLL	11	Unmodified	_EENLVERTGLL_					0	0	0			REV__ENSG00000123983|ENST00000357430|ACSL3	REV__ENSG00000123983|ENST00000357430|ACSL3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	636.843342	1271.67213	-0.73754	-0.0004697	0.22897	0.00014582	-0.50857	-0.00032388	636.8435238834843	63.038	0.50636	63.78	63.534	64.04	0.74263	-0.017607	-5.3063E-05	NaN	83.429	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3845500	+		9684	18265	6821	6882							0.047161325267552456
EENLYFKNF	9	Unmodified	_EENLYFKNF_					0	0	0		ENST00000475892.5_2_13:37619503-37622072:-|nuORF;ENST00000464744.5_2_13:37619503-37622072:-|nuORF	ENST00000475892.5_2_13:37619503-37622072:-|nuORF	ENST00000475892.5_2_13:37619503-37622072:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	602.687744140625	2	602.287671	1202.56079	-0.35109	-0.00021146	1.0056	0.00060567	0.65452	0.00039421	602.2891395351376	77.538	0.45607	77.538	77.286	77.742	0					18	8	3	0	0	0	0.0020209	2	28289	28256;28289		174.73	89.455	1	3913400			9685	12231	6822	6883	9472;9473	9473					-0.03238882110531449
EENMGEHCD	9	Unmodified	_EENMGEHCD_					0	0	0		ENSG00000130528|ENST00000252825|HRC	ENSG00000130528|ENST00000252825|HRC	ENSG00000130528|ENST00000252825|HRC	MULTI-SECPEP	A375_MHC_IP_R2	2	1063.3367919921875	1	1063.34554	1062.33826	0.10361	0.00011017	-0.63618	-0.00067648	-0.53257	-0.00056631	1065.3497069952057	120.34	1.5687	120.87	119.84	121.4	0.5321					64	30	4	0	0	0	0.80005	1	46096	46096		4.756	2.4533	1	246300000			9686	4251	6823	6884	9474	9474					-0.19041647509698123
EENMRGVRF	9	Unmodified	_EENMRGVRF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-SECPEP	A375_MHC_IP_R2	2	380.2538757324219	3	379.853835	1136.53968	0.034692	1.3178E-05	0.1734	6.5867E-05	0.20809	7.9045E-05	379.85389529095454	32.037	0.30241	32.774	32.555	32.857	0.73692					12	5	3	0	0	0	0.65246	1	11361	11361		20.415	10.264	1	4962100			9687	7207	6824	6885	9475	9475					-0.023131706910135108
EENNDKHVAV	10	Unmodified	_EENNDKHVAV_					0	0	0		ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-SECPEP	A375_MHC_IP_R2	2	578.176025390625	2	577.775459	1153.53637	-0.35181	-0.00020327	1.8537	0.001071	1.5019	0.00086777	577.7762956566323	66.229	0.61273	66.967	66.628	67.241	0.73782					20	11	3	0	0	0	0.91442	1	25099	25099		11.495	7.8982	1	2851300			9688	4768	6825	6886	9476	9476					-0.03426142264061127
EENNDKHVAV	10	Unmodified	_EENNDKHVAV_					0	0	0		ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-MATCH	A375_MHC_IP_R1	1		2	577.775459	1153.53637	-0.45299	-0.00026173	1.8391	0.0010626	1.3862	0.00080089	577.7764285022602	67	0.61302	67	66.684	67.297	0	0.016093	-6.5107E-06	NaN	11.495	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2284600			9689	4768	6825	6886							-0.03426142264061127
EENNISGLN	9	Unmodified	_EENNISGLN_					0	0	0		ENSG00000241322|ENST00000395906|FBXW10B;nc|ENSG00000171931|Q5XX13-3|FBXW10;nc|ENSG00000171931|Q5XX13-4|FBXW10;ENSG00000171931|ENST00000395665|FBXW10;nc|ENSG00000171931|Q5XX13-2|FBXW10	ENSG00000241322|ENST00000395906|FBXW10B	ENSG00000241322|ENST00000395906|FBXW10B	MULTI-MSMS	A375_MHC_IP_R1	1	495.1563720703125	2	495.230353	988.446153	-0.22252	-0.0001102	-0.52688	-0.00026093	-0.7494	-0.00037113	495.229997018195	37.336	0.61288	37.336	37.045	37.658	0					18	11	2	0	0	0	0.2002	1	12681	12681		37.974	0	1	1616200			9690	9783	6826	6887	9477	9477					-0.04853191592485473
EENNISGLN	9	Unmodified	_EENNISGLN_					0	0	0		ENSG00000241322|ENST00000395906|FBXW10B;nc|ENSG00000171931|Q5XX13-3|FBXW10;nc|ENSG00000171931|Q5XX13-4|FBXW10;ENSG00000171931|ENST00000395665|FBXW10;nc|ENSG00000171931|Q5XX13-2|FBXW10	ENSG00000241322|ENST00000395906|FBXW10B	ENSG00000241322|ENST00000395906|FBXW10B	MSMS	A375_MHC_IP_R2	2	495.156005859375	2	495.230353	988.446153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.729	1	37.5	37	38	0.7709								0	0	0	0.11332	1	13407	13407		37.974	0	1				9691	9783	6826	6887	9478	9478					-0.04853191592485473
EENNKPMYLY	10	Unmodified	_EENNKPMYLY_					0	0	0		tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	651.1975708007812	2	650.797546	1299.58054	-0.3012	-0.00019602	0.14422	9.3858E-05	-0.15698	-0.00010216	650.797536694445	70.794	0.40809	70.794	70.545	70.953	0					21	7	3	0	0	0	0.78945	1	25732	25732		19.257	2.1441	1	3159400			9692	29793	6827	6888	9479	9479					-0.057268741620646324
EENNKPMYLY	10	Unmodified	_EENNKPMYLY_					0	0	0		tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	651.197021484375	2	650.797546	1299.58054	-0.68423	-0.0004453	-0.45633	-0.00029698	-1.1406	-0.00074228	651.2985876811456	70.147	0.45689	70.881	70.591	71.048	0.73421					19	8	3	0	0	0	0.76414	1	26617	26617		26.884	10.735	1	2771200			9693	29793	6827	6888	9480	9480					-0.057268741620646324
EENNPKLLL	9	Unmodified	_EENNPKLLL_					0	0	0		ENSG00000126653|ENST00000247026|NSRP1	ENSG00000126653|ENST00000247026|NSRP1	ENSG00000126653|ENST00000247026|NSRP1	MULTI-SECPEP	A375_MHC_IP_R1	1	535.6973266601562	2	535.298039	1068.58152	-0.70288	-0.00037625	0.099542	5.3284E-05	-0.60333	-0.00032296	535.2979576666655	60.521	0.71198	60.521	60.109	60.821	0					21	13	2	0	0	0	0.58271	1	21764	21764		14.838	3.198	1	3026800			9694	4053	6828	6889	9481	9481					0.04997708269161194
EENNPLETEY	10	Unmodified	_EENNPLETEY_					0	0	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3;MCM3|p.D222Efs*39|1|0.26|ENSG00000112118|chr6:52279465-52279465|A/-|frameshift_variant	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-MSMS	A375_MHC_IP_R1	1	619.6629638671875	2	619.26459	1236.51463	-0.46595	-0.00028855	-0.37752	-0.00023378	-0.84347	-0.00052233	619.2642437873494	65.08	0.55669	65.08	64.7	65.257	0					16	10	2	0	0	0	0.011373	1	23538	23538		121.53	86.602	1	1465400			9695	3050	6829	6890	9482	9482					-0.09416991803277597
EENNPLETEY	10	Unmodified	_EENNPLETEY_					0	0	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3;MCM3|p.D222Efs*39|1|0.26|ENSG00000112118|chr6:52279465-52279465|A/-|frameshift_variant	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-MSMS	A375_MHC_IP_R2	2	619.6639404296875	2	619.26459	1236.51463	-0.6241	-0.00038648	0.031213	1.9329E-05	-0.59289	-0.00036715	619.2642405145428	64.405	0.50942	65.146	64.954	65.463	0.74022					16	9	2	0	0	0	0.0062475	2	24461	24461;24473		103.42	61.464	1	1561500			9696	3050	6829	6890	9483;9484	9483					-0.09416991803277597
EENNQNFTV	9	Unmodified	_EENNQNFTV_					0	0	0		tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	547.1826782226562	2	547.741085	1093.46762	-0.0395	-2.1636E-05	-1.1082	-0.00060703	-1.1477	-0.00062867	547.7401537104438	49.184	0.35392	49.184	49.033	49.387	0					10	6	2	0	0	0	0.75466	1	17359	17359		12.532	0.89125	1	694680			9697	29862	6830	6891	9485	9485					-0.07537806563755112
EENPGIFAV	9	Unmodified	_EENPGIFAV_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	A375_MHC_IP_R2	2	488.64239501953125	2	488.242732	974.470912	-0.55906	-0.00027296	0.25249	0.00012328	-0.30657	-0.00014968	488.2427196849412	96.13	0.60938	96.881	96.602	97.211	0.75045					17	11	2	0	0	0	0.091096	1	36526	36526		52.268	2.3353	1	1176500			9698	1942	6831	6892	9486	9486					-0.017345117190984638
EENPGIFAV	9	Unmodified	_EENPGIFAV_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MATCH	A375_MHC_IP_R1	1		2	488.242732	974.470912	-0.18137	-8.8554E-05	0.098211	4.7951E-05	-0.083163	-4.0604E-05	488.242641335755	96.916	0.50697	96.916	96.63	97.137	0	0.017886	-8.4304E-05	NaN	52.268	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	805290			9699	1942	6831	6892							-0.017345117190984638
EENPGKFLF	9	Unmodified	_EENPGKFLF_					0	0	0		ENST00000509709.1_1_4:86491769-86643139:+|nuORF;ENST00000506421.5_1_4:86396696-86644501:+|nuORF;nc|ENSG00000138639|Q8N264-5|ARHGAP24;nc|ENSG00000138639|Q8N264-4|ARHGAP24;ENSG00000138639|ENST00000395184|ARHGAP24	ENST00000509709.1_1_4:86491769-86643139:+|nuORF	ENST00000509709.1_1_4:86491769-86643139:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1080.1243896484375	1	1080.53604	1079.52876	0.10775	0.00011643	-1.3835	-0.0014949	-1.2758	-0.0013785	1081.5330276023124	124.52	0.35156	124.85	124.6	124.95	0.32969					9	6	2	0	0	0	0.65246	1	48164	48164		21.747	6.9084	1	13489000			9700	5013	6832	6893	9487	9487					-0.007822497936786021
EENPIVLEF	9	Unmodified	_EENPIVLEF_					0	0	0		ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	MULTI-MSMS	A375_MHC_IP_R1	1	545.716796875	2	545.276772	1088.53899	-0.55055	-0.0003002	-0.086464	-4.7147E-05	-0.63702	-0.00034735	545.276635805813	125.48	0.7028	125.48	125.25	125.95	0					41	13	4	0	0	0	0.0053789	3	47685	47685;47722;48023		163.04	87.275	1	453750000			9701	6722	6833	6894	9488;9489;9490	9488					-0.0017368685910241766
EENPIVLEF	9	Unmodified	_EENPIVLEF_					0	0	0		ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	MULTI-MSMS	A375_MHC_IP_R1	1	1090.5855712890625	1	1089.54627	1088.53899	0.10182	0.00011093	0.64987	0.00070806	0.75169	0.000819	1089.5469323213126	125.52	1.0046	125.52	125.25	126.25	0					42	19	4	0	0	0	0.015356	2	47712	47712;47865		89.401	53.357	1	1030599999.9999999			9702	6722	6833	6894	9491;9492	9491					-0.0017368685910241766
EENPIVLEF	9	Unmodified	_EENPIVLEF_					0	0	0		ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	MULTI-MSMS	A375_MHC_IP_R2	2	545.6759643554688	2	545.276772	1088.53899	-0.76935	-0.00041951	0.20843	0.00011365	-0.56093	-0.00030586	545.2768052784585	125.04	0.85542	125.37	125.05	125.91	0.32969					37	16	5	0	0	0	0.0053789	3	48462	48462;48555;49007		163.04	77.394	1	357630000			9703	6722	6833	6894	9493;9494;9495	9493					-0.0017368685910241766
EENPKREDY	9	Unmodified	_EENPKREDY_					0	0	0		ENSG00000117360|ENST00000324862|PRPF3;ENST00000467329.5_1_1:150300781-150316915:+|nuORF;ENST00000519029.1_1_8:67896909-67897419:-|nuORF	ENSG00000117360|ENST00000324862|PRPF3	ENSG00000117360|ENST00000324862|PRPF3	MULTI-MSMS	A375_MHC_IP_R2	2	590.6672973632812	2	590.267467	1178.52038	-1.0001	-0.00059032	0.16165	9.5416E-05	-0.83844	-0.0004949	590.2675477471919	25.215	0.40931	25.859	25.668	26.078	0.64368					16	7	3	0	0	0	0.68216	1	8479	8479		8.5933	0.98433	1	3253300			9704	3475	6834	6895	9496	9496					-0.06173848500952772
EENPKREDY	9	Unmodified	_EENPKREDY_					0	0	0		ENSG00000117360|ENST00000324862|PRPF3;ENST00000467329.5_1_1:150300781-150316915:+|nuORF;ENST00000519029.1_1_8:67896909-67897419:-|nuORF	ENSG00000117360|ENST00000324862|PRPF3	ENSG00000117360|ENST00000324862|PRPF3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	590.267467	1178.52038	-0.49396	-0.00029157	-0.022133	-1.3064E-05	-0.51609	-0.00030463	590.2672528989833	25.746	0.40472	25.746	25.562	25.966	0	-0.056344	-0.00013984	NaN	8.5933	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3745300			9705	3475	6834	6895							-0.06173848500952772
EENPKREDY	9	Unmodified	_EENPKREDY_					0	0	0		ENSG00000117360|ENST00000324862|PRPF3;ENST00000467329.5_1_1:150300781-150316915:+|nuORF;ENST00000519029.1_1_8:67896909-67897419:-|nuORF	ENSG00000117360|ENST00000324862|PRPF3	ENSG00000117360|ENST00000324862|PRPF3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	590.267467	1178.52038	-1.0001	-0.00059032	0.16165	9.5416E-05	-0.83844	-0.0004949	590.2675477471919	25.215	0.40931	25.859	25.668	26.078	0.64368	0.056344	7.7124E-05	NaN	8.5933	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3253300			9706	3475	6834	6895							-0.06173848500952772
EENPKVLIT	9	Unmodified	_EENPKVLIT_					0	0	0		ENSG00000197208|ENST00000200652|SLC22A4	ENSG00000197208|ENST00000200652|SLC22A4	ENSG00000197208|ENST00000200652|SLC22A4	MULTI-SECPEP	A375_MHC_IP_R1	1	522.192138671875	2	521.792589	1041.57063	-0.41729	-0.00021774	-0.97782	-0.00051022	-1.3951	-0.00072796	521.7924202675927	44.134	0.66371	44.134	43.706	44.37	0					22	12	3	0	0	0	0.20451	1	15397	15397		49.554	18.286	1	3151300			9707	9130	6835	6896	9497	9497					0.0515030589485832
EENPKVLIT	9	Unmodified	_EENPKVLIT_					0	0	0		ENSG00000197208|ENST00000200652|SLC22A4	ENSG00000197208|ENST00000200652|SLC22A4	ENSG00000197208|ENST00000200652|SLC22A4	MULTI-SECPEP	A375_MHC_IP_R2	2	522.1923217773438	2	521.792589	1041.57063	-0.46927	-0.00024486	-0.76677	-0.00040009	-1.236	-0.00064496	521.7924569307529	43.311	0.45596	44.084	43.826	44.282	0.7724					13	8	2	0	0	0	0.14554	1	16154	16154		57.249	25.981	1	3378800			9708	9130	6835	6896	9498	9498					0.0515030589485832
EENPLKRGL	9	Unmodified	_EENPLKRGL_					0	0	0		ENSG00000003756|ENST00000347869|RBM5;ENST00000492430.1_1_3:50151648-50153476:+|nuORF;ENST00000475590.5_1_3:50151466-50154632:+|nuORF	ENSG00000003756|ENST00000347869|RBM5	ENSG00000003756|ENST00000347869|RBM5	MULTI-MSMS	A375_MHC_IP_R1	1	352.9330139160156	3	352.532979	1054.57711	-0.056206	-1.9815E-05	0.11459	4.0396E-05	0.058382	2.0582E-05	352.53298757538147	31.596	0.81319	31.596	31.211	32.024	0					34	15	3	0	0	0	0.50892	1	10074	10074		19.362	8.5624	1	6441000			9709	861	6836	6897	9499	9499					0.052002438462295686
EENPLKRGL	9	Unmodified	_EENPLKRGL_					0	0	0		ENSG00000003756|ENST00000347869|RBM5;ENST00000492430.1_1_3:50151648-50153476:+|nuORF;ENST00000475590.5_1_3:50151466-50154632:+|nuORF	ENSG00000003756|ENST00000347869|RBM5	ENSG00000003756|ENST00000347869|RBM5	MULTI-SECPEP	A375_MHC_IP_R1	1	528.6953125	2	528.29583	1054.57711	-0.49603	-0.00026205	0.12557	6.6336E-05	-0.37047	-0.00019572	528.2956703483455	31.595	0.70991	31.595	31.109	31.819	0					24	13	3	0	0	0	0.63622	1	10123	10123		24.991	24.991	1	2081700			9710	861	6836	6897	9500	9500					0.052002438462295686
EENPLKRGL	9	Unmodified	_EENPLKRGL_					0	0	0		ENSG00000003756|ENST00000347869|RBM5;ENST00000492430.1_1_3:50151648-50153476:+|nuORF;ENST00000475590.5_1_3:50151466-50154632:+|nuORF	ENSG00000003756|ENST00000347869|RBM5	ENSG00000003756|ENST00000347869|RBM5	MULTI-SECPEP	A375_MHC_IP_R2	2	352.932861328125	3	352.532979	1054.57711	-0.25694	-9.058E-05	-0.18078	-6.3729E-05	-0.43772	-0.00015431	352.5329282173263	30.824	0.75871	31.542	31.216	31.974	0.71857					34	14	3	0	0	0	0.20567	1	10836	10836		34.932	16.559	1	8078500			9711	861	6836	6897	9501	9501					0.052002438462295686
EENPLKRGL	9	Unmodified	_EENPLKRGL_					0	0	0		ENSG00000003756|ENST00000347869|RBM5;ENST00000492430.1_1_3:50151648-50153476:+|nuORF;ENST00000475590.5_1_3:50151466-50154632:+|nuORF	ENSG00000003756|ENST00000347869|RBM5	ENSG00000003756|ENST00000347869|RBM5	MULTI-MATCH	A375_MHC_IP_R2	2		2	528.29583	1054.57711	-0.54462	-0.00028772	-0.51208	-0.00027053	-1.0567	-0.00055825	528.2954772843207	30.842	0.75704	31.56	31.064	31.821	0.71857	-0.017247	-0.00037468	NaN	55.503	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2734400			9712	861	6836	6897							0.052002438462295686
EENPQKLAF	9	Unmodified	_EENPQKLAF_					0	0	0		ENST00000527401.5_1_11:45957138-45987102:-|nuORF;nc|ENSG00000135365|Q96BD5-2|PHF21A;nc|ENSG00000135365|Q96BD5|PHF21A;ENSG00000135365|ENST00000676320|PHF21A;ENST00000527753.5_1_11:45959861-45986961:-|nuORF	ENST00000527401.5_1_11:45957138-45987102:-|nuORF	ENST00000527401.5_1_11:45957138-45987102:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	538.6741943359375	2	538.274564	1074.53457	-0.20515	-0.00011043	-0.694	-0.00037356	-0.89915	-0.00048399	538.274023896467	48.837	0.55759	48.837	48.526	49.084	0					22	10	3	0	0	0	0.35487	1	17265	17265		36.127	24.487	1	4342800			9713	4675	6837	6898	9502	9502					0.0002884871798869426
EENPQKLAF	9	Unmodified	_EENPQKLAF_					0	0	0		ENST00000527401.5_1_11:45957138-45987102:-|nuORF;nc|ENSG00000135365|Q96BD5-2|PHF21A;nc|ENSG00000135365|Q96BD5|PHF21A;ENSG00000135365|ENST00000676320|PHF21A;ENST00000527753.5_1_11:45959861-45986961:-|nuORF	ENST00000527401.5_1_11:45957138-45987102:-|nuORF	ENST00000527401.5_1_11:45957138-45987102:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	538.6531982421875	2	538.274564	1074.53457	-0.76888	-0.00041387	-0.52072	-0.00028029	-1.2896	-0.00069416	538.2742299287793	48.102	0.80579	48.863	48.378	49.184	0.76128					28	15	3	0	0	0	0.35487	1	18105	18105		43.858	29.02	1	4480600			9714	4675	6837	6898	9503	9503					0.0002884871798869426
EENQCNEQH	9	Unmodified	_EENQCNEQH_					0	0	0			REV__ENSG00000176153|ENST00000389614|GPX2	REV__ENSG00000176153|ENST00000389614|GPX2	MSMS	A375_MHC_IP_R1	1	565.7037963867188	2	565.712002	1129.40945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.621	1	90.621	90.121	91.121	0								0	0	0	0.15486	1	33304	33304		11.64	1.4569	1		+		9715	21388	6838	6899	9504	9504					-0.15007811480677447
EENQELVTRW	10	Unmodified	_EENQELVTRW_					0	0	0		nc|ENSG00000085978|Q676U5-2|ATG16L1;ENSG00000085978|ENST00000392017|ATG16L1;ENST00000474148.5_1_2:234160473-234181699:+|nuORF;nc|ENSG00000085978|Q676U5-3|ATG16L1;ENST00000479942.5_1_2:234160473-234198706:+|nuORF	nc|ENSG00000085978|Q676U5-2|ATG16L1	nc|ENSG00000085978|Q676U5-2|ATG16L1	MULTI-MSMS	A375_MHC_IP_R1	1	652.7173461914062	2	652.317491	1302.62043	-0.37386	-0.00024388	0.70661	0.00046094	0.33275	0.00021706	652.3178793424764	60.038	0.66121	60.038	59.701	60.363	0					36	12	4	0	0	0	0.011479	1	21577	21577		125.18	95.341	1	11731000			9716	1822	6839	6900	9505	9505					-0.018776111671513718
EENQELVTRW	10	Unmodified	_EENQELVTRW_					0	0	0		nc|ENSG00000085978|Q676U5-2|ATG16L1;ENSG00000085978|ENST00000392017|ATG16L1;ENST00000474148.5_1_2:234160473-234181699:+|nuORF;nc|ENSG00000085978|Q676U5-3|ATG16L1;ENST00000479942.5_1_2:234160473-234198706:+|nuORF	nc|ENSG00000085978|Q676U5-2|ATG16L1	nc|ENSG00000085978|Q676U5-2|ATG16L1	MULTI-MSMS	A375_MHC_IP_R2	2	652.7171020507812	2	652.317491	1302.62043	-1.1895	-0.00077592	0.33619	0.0002193	-0.8533	-0.00055662	652.3176934922762	59.326	0.65713	60.073	59.793	60.45	0.74714					29	12	3	0	0	0	0.011413	1	22435	22435		135.72	97.543	1	11489000			9717	1822	6839	6900	9506	9506					-0.018776111671513718
EENQGGTALSF	11	Unmodified	_EENQGGTALSF_					0	0	0			REV__nc|ENSG00000128512|Q8N1I0|DOCK4	REV__nc|ENSG00000128512|Q8N1I0|DOCK4	MULTI-SECPEP	A375_MHC_IP_R2	2	576.6819458007812	2	576.762017	1151.50948	-0.5851	-0.00033747	0.023187	1.3373E-05	-0.56192	-0.00032409	576.7619285260414	26.068	0.55821	26.728	26.551	27.109	0.65992					17	10	2	0	0	0	0.98748	1	8714	8714		13.042	6.3193	1	3818300	+		9718	27216	6840	6901	9507	9507					-0.06021250875255646
EENQTVSHF	9	Unmodified	_EENQTVSHF_					0	0	0			REV__CCDC136|p.S358F|1|0.37|ENSG00000128596|chr7:128805885-128805885|C/T|missense_variant	REV__CCDC136|p.S358F|1|0.37|ENSG00000128596|chr7:128805885-128805885|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	545.6817016601562	2	545.743628	1089.4727	-0.74141	-0.00040462	-0.60987	-0.00033283	-1.3513	-0.00073745	545.7430772288089	70.186	0.55948	70.92	70.743	71.302	0.73421					16	10	2	0	0	0	0.69504	1	26705	26705		12.532	0	1	1396000	+		9719	15590	6841	6902	9508	9508					-0.06845502701139594
EENQVILDF	9	Unmodified	_EENQVILDF_					0	0	0		tr|U7T166|U7T166_FUSNURibbon-helix-helixproteinCopGdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00634PE=4SV=1	tr|U7T166|U7T166_FUSNURibbon-helix-helixproteinCopGdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00634PE=4SV=1	tr|U7T166|U7T166_FUSNURibbon-helix-helixproteinCopGdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00634PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	554.22216796875	2	553.771854	1105.52915	-0.70867	-0.00039244	3.7476	0.0020753	3.0389	0.0016829	554.275781312539	69.998	0.25246	70.732	70.591	70.844	0.73421					6	4	2	0	0	0	0.4867	1	26500	26500		20.454	1.1966	1	648450			9720	29902	6842	6903	9509	9509					-0.01938874864481477
EENRAEAQRW	10	Unmodified	_EENRAEAQRW_					0	0	0		nc|ENSG00000063176|Q9NRA0-3|SPHK2;nc|ENSG00000063176|Q9NRA0-4|SPHK2;nc|ENSG00000063176|Q9NRA0-2|SPHK2;ENSG00000063176|ENST00000245222|SPHK2;nc|ENSG00000063176|Q9NRA0-5|SPHK2	nc|ENSG00000063176|Q9NRA0-3|SPHK2	nc|ENSG00000063176|Q9NRA0-3|SPHK2	MULTI-SECPEP	A375_MHC_IP_R2	2	430.6103515625	3	430.205814	1287.59561	-0.4973	-0.00021394	0.33291	0.00014322	-0.16439	-7.0721E-05	430.2056504261842	19.232	0.25246	19.835	19.733	19.986	0.60308					6	4	2	0	0	0	0.74263	1	5858	5858		27.088	3.2873	1	2023500			9721	14470	6843	6904	9510	9510					-0.03668246249890217
EENRIKYF	8	Unmodified	_EENRIKYF_					0	0	0		tr|U7SXS1|U7SXS1_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00937PE=4SV=1	tr|U7SXS1|U7SXS1_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00937PE=4SV=1	tr|U7SXS1|U7SXS1_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00937PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	549.7025756835938	2	549.782556	1097.55056	-0.17531	-9.6383E-05	1.6991	0.00093416	1.5238	0.00083777	549.7826129895652	69.175	0.35692	69.175	68.969	69.326	0					11	6	2	0	0	0	0.95423	1	25062	25062		12.532	8.2023	1	900780			9722	29831	6844	6905	9511	9511					0.005685549548843483
EENRIKYF	8	Unmodified	_EENRIKYF_					0	0	0		tr|U7SXS1|U7SXS1_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00937PE=4SV=1	tr|U7SXS1|U7SXS1_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00937PE=4SV=1	tr|U7SXS1|U7SXS1_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00937PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	549.782556	1097.55056	-0.67101	-0.00036891	1.474	0.00081036	0.80295	0.00044145	549.7833135583952	68.439	0.30379	69.174	68.918	69.221	0.73512	-0.00066658	-0.0001759	NaN	12.532	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	732660			9723	29831	6844	6905							0.005685549548843483
EENRYVVRL	9	Unmodified	_EENRYVVRL_					0	0	0		ENSG00000054967|ENST00000064780|RELT	ENSG00000054967|ENST00000064780|RELT	ENSG00000054967|ENST00000064780|RELT	MULTI-SECPEP	A375_MHC_IP_R1	1	589.7197875976562	2	589.319837	1176.62512	-0.16649	-9.8117E-05	-0.27521	-0.00016219	-0.4417	-0.0002603	589.3195203861826	42.478	0.55658	42.478	42.132	42.689	0					16	10	2	0	0	0	0.67471	1	14765	14765		13.042	6.3193	1	2028800			9724	1264	6845	6906	9512	9512					0.0438731776628174
EENRYVVRL	9	Unmodified	_EENRYVVRL_					0	0	0		ENSG00000054967|ENST00000064780|RELT	ENSG00000054967|ENST00000064780|RELT	ENSG00000054967|ENST00000064780|RELT	MULTI-MSMS	A375_MHC_IP_R2	2	589.7192993164062	2	589.319837	1176.62512	-0.62923	-0.00037082	0.48812	0.00028766	-0.14111	-8.3159E-05	589.3200385524905	41.666	0.30639	42.441	42.249	42.555	0.77451					9	5	2	0	0	0	0.70902	1	15504	15504		9.3831	0	1	1889200			9725	1264	6845	6906	9513	9513					0.0438731776628174
EENRYVVRL	9	Unmodified	_EENRYVVRL_					0	0	0		ENSG00000054967|ENST00000064780|RELT	ENSG00000054967|ENST00000064780|RELT	ENSG00000054967|ENST00000064780|RELT	MULTI-SECPEP	A375_MHC_IP_R2	2	393.6155700683594	3	393.21565	1176.62512	-0.23414	-9.2068E-05	0.017096	6.7224E-06	-0.21705	-8.5346E-05	393.2156688474286	41.663	0.51042	42.437	42.198	42.709	0.77451					22	9	3	0	0	0	0.59614	1	15467	15467		28.495	14.88	1	4875300			9726	1264	6845	6906	9514	9514					0.0438731776628174
EENRYVVRL	9	Unmodified	_EENRYVVRL_					0	0	0		ENSG00000054967|ENST00000064780|RELT	ENSG00000054967|ENST00000064780|RELT	ENSG00000054967|ENST00000064780|RELT	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	589.319837	1176.62512	-0.62923	-0.00037082	0.48812	0.00028766	-0.14111	-8.3159E-05	589.3200385524905	41.666	0.30639	42.441	42.249	42.555	0.77451	-0.018522	0.00041771	NaN	13.042	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1889200			9727	1264	6845	6906							0.0438731776628174
EENSAIIIQSW	11	Unmodified	_EENSAIIIQSW_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant;ASPM|p.V2172Sfs*9|1|0.47|ENSG00000066279|chr1:197102741-197102741|A/-|frameshift_variant	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	A375_MHC_IP_R1	1	645.7206420898438	2	645.322242	1288.62993	-0.20508	-0.00013235	-0.34194	-0.00022066	-0.54702	-0.00035301	645.3220183527907	111.85	0.5101	111.85	111.52	112.03	0					12	9	2	0	0	0	0.7254	1	41027	41027		32.037	15.888	1	1684600			9728	1407	6846	6907	9515	9515					-0.0028384288161760196
EENSAIIIQSW	11	Unmodified	_EENSAIIIQSW_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant;ASPM|p.V2172Sfs*9|1|0.47|ENSG00000066279|chr1:197102741-197102741|A/-|frameshift_variant	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MATCH	A375_MHC_IP_R2	2		2	645.322242	1288.62993	-0.51232	-0.00033061	-0.087859	-5.6697E-05	-0.60018	-0.00038731	645.8235427790929	110.98	0.35642	111.72	111.55	111.9	0.73692	-0.064232	0.00010914	NaN	32.037	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2177800			9729	1407	6846	6907							-0.0028384288161760196
EENSFLPKQN	10	Unmodified	_EENSFLPKQN_					0	0	0			REV__ENST00000297857.3_1_8:124268247-124268292:-|nuORF	REV__ENST00000297857.3_1_8:124268247-124268292:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	602.6873779296875	2	603.293485	1204.57242	-0.46079	-0.00027799	-0.9256	-0.00055841	-1.3864	-0.0008364	603.2914605930973	76.735	0.20297	77.476	77.401	77.604	0.74052					5	3	2	0	0	0	0.90513	1	29166	29166		17.113	0.96379	1	892710	+		9730	23399	6847	6908	9516	9516					-0.021686850871901697
EENSMRLDL	9	Oxidation (M)	_EENSM(Oxidation (M))RLDL_		EENSM(1)RLDL		EENSM(68)RLDL	0	0	1		nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	MULTI-MSMS	A375_MHC_IP_R1	1	562.1581420898438	2	561.75842	1121.50229	-0.67484	-0.0003791	0.12384	6.9571E-05	-0.55099	-0.00030953	561.758587759826	39.893	0.40646	39.893	39.643	40.05	0					17	7	3	0	0	0	0.04093	1	13653	13653		67.838	7.7643	1	4098100			9731	2782	6848	6909	9517	9517		123			-0.05360306747297727
EENSMRLDL	9	Oxidation (M)	_EENSM(Oxidation (M))RLDL_		EENSM(1)RLDL		EENSM(44)RLDL	0	0	1		nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	MULTI-SECPEP	A375_MHC_IP_R1	1	562.1458740234375	2	561.75842	1121.50229	-0.44011	-0.00024724	-0.25471	-0.00014308	-0.69482	-0.00039032	561.758127656054	40.296	0.50924	40.296	40.05	40.559	0					16	9	2	0	0	0	0.37663	1	13794	13794		43.772	7.7282	1	4371900			9732	2782	6848	6909	9518	9518		123			-0.05360306747297727
EENSMRLDL	9	Oxidation (M)	_EENSM(Oxidation (M))RLDL_		EENSM(1)RLDL		EENSM(68)RLDL	0	0	1		nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	MULTI-MSMS	A375_MHC_IP_R2	2	562.1580200195312	2	561.75842	1121.50229	-0.75606	-0.00042472	-0.017304	-9.7206E-06	-0.77336	-0.00043444	561.7584939299505	39.108	0.91693	39.883	39.607	40.524	0.77451					26	17	3	0	0	0	0.04093	1	14441	14441		67.838	7.7643	1	4657700			9733	2782	6848	6909	9519	9519		123			-0.05360306747297727
EENSMRLDL	9	Unmodified	_EENSMRLDL_					0	0	0		nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	MULTI-MSMS	A375_MHC_IP_R1	1	554.1593627929688	2	553.760963	1105.50737	-0.48767	-0.00027005	-0.26999	-0.00014951	-0.75766	-0.00041956	553.7607566029678	62.115	0.56406	62.115	61.839	62.403	0					18	10	3	0	0	0	0.050868	1	22395	22395		63.961	16.212	1	4083300			9734	2782	6848	6910	9520	9520					-0.04116002884688896
EENSMRLDL	9	Unmodified	_EENSMRLDL_					0	0	0		nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	MULTI-MSMS	A375_MHC_IP_R2	2	554.1600952148438	2	553.760963	1105.50737	-1.0912	-0.00060428	0.30984	0.00017158	-0.78139	-0.00043271	553.7610753088117	61.28	0.55322	62.025	61.769	62.322	0.74503					18	10	2	0	0	0	0.032333	2	23217	23217;23257		72.968	16.791	1	4062200			9735	2782	6848	6910	9521;9522	9521					-0.04116002884688896
EENSRILKF	9	Unmodified	_EENSRILKF_					0	0	0		nc|ENSG00000128872|Q9NZR1-2|TMOD2;ENSG00000128872|ENST00000249700|TMOD2	nc|ENSG00000128872|Q9NZR1-2|TMOD2	nc|ENSG00000128872|Q9NZR1-2|TMOD2	MULTI-MSMS	A375_MHC_IP_R2	2	379.6082763671875	3	379.208384	1134.60332	0.14527	5.5089E-05	-0.49366	-0.0001872	-0.34839	-0.00013211	379.20827255995846	42.658	0.50777	43.431	43.116	43.623	0.7724					21	9	3	0	0	0	0.1915	1	15856	15856		38.615	7.9113	1	3451300			9736	4167	6849	6911	9523	9523					0.04140513017705416
EENTKVFGR	9	Unmodified	_EENTKVFGR_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-MSMS	A375_MHC_IP_R1	1	540.17431640625	2	540.277638	1078.54072	-0.74103	-0.00040036	2.7406	0.0014807	1.9996	0.0010803	540.2784559363308	80.314	0.91586	80.314	79.676	80.592	0					28	17	3	0	0	0	0.53367	1	29197	29197		18.146	0.011366	1	1697400			9737	4204	6850	6912	9524	9524					0.004593669495079666
EENTLVQNY	9	Unmodified	_EENTLVQNY_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-SECPEP	A375_MHC_IP_R1	1	555.3086547851562	2	555.259111	1108.50367	-0.35399	-0.00019655	0.047453	2.6349E-05	-0.30653	-0.00017021	555.259066069559	53.944	0.55657	53.944	53.707	54.263	0					22	10	3	0	0	0	0.14572	1	19297	19297		62.573	31.936	1	4507800			9738	2045	6851	6913	9525	9525					-0.04624349386904214
EENTLVQNY	9	Unmodified	_EENTLVQNY_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-SECPEP	A375_MHC_IP_R2	2	555.6578979492188	2	555.259111	1108.50367	-1.3609	-0.00075563	0.395	0.00021933	-0.96586	-0.00053631	555.2593390027913	53.349	0.5114	54.1	53.842	54.353	0.75105					19	9	3	0	0	0	0.074405	1	20126	20126		70.332	42.703	1	3847800			9739	2045	6851	6913	9526	9526					-0.04624349386904214
EENTNILKF	9	Unmodified	_EENTNILKF_					0	0	0		ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	MULTI-SECPEP	A375_MHC_IP_R1	1	554.6873168945312	2	554.287671	1106.56079	-0.47071	-0.00026091	-0.10419	-5.7754E-05	-0.57491	-0.00031866	554.2875798556493	70.548	1.0758	70.548	70.135	71.211	0					58	20	4	0	0	0	0.03341	1	25534	25534		103.42	75.791	1	33320000			9740	5003	6852	6914	9527	9527					0.011771178894832701
EENTNILKF	9	Unmodified	_EENTNILKF_					0	0	0		ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	MULTI-SECPEP	A375_MHC_IP_R2	2	554.6873779296875	2	554.287671	1106.56079	-0.69568	-0.00038561	0.16948	9.394E-05	-0.5262	-0.00029167	554.287745957273	69.728	1.0174	70.462	70.081	71.099	0.73421					56	19	4	0	0	0	0.0073895	1	26349	26349		171.46	138.68	1	49493000			9741	5003	6852	6914	9528	9528					0.011771178894832701
EENVFILELS	10	Unmodified	_EENVFILELS_					0	0	0			REV__nc|ENSG00000164707|Q9UKG4|SLC13A4	REV__nc|ENSG00000164707|Q9UKG4|SLC13A4	MULTI-MSMS	A375_MHC_IP_R1	1	597.9036254882812	2	596.808436	1191.60232	-0.4173	-0.00024905	0.17772	0.00010606	-0.23958	-0.00014298	596.8084207023558	89.583	0.76001	89.583	89.12	89.88	0					33	14	3	0	0	0	0.62155	2	32866	32866;32909		19.257	0	1	9433900	+		9742	27327	6853	6915	9529;9530	9529					0.014182538581508197
EENVNNISI	9	Unmodified	_EENVNNISI_					0	0	0			REV__tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1	REV__tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1	MSMS	A375_MHC_IP_R2	2	516.17919921875	2	516.253828	1030.4931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.58	1	45.349	44.849	45.849	0.7691								0	0	0	0.14359	1	16642	16642		28.487	3.0875	1		+		9743	28624	6854	6916	9531	9531					-0.020923320413203328
EENVRRVFQ	9	Unmodified	_EENVRRVFQ_					0	0	0		ENSG00000171763|ENST00000305560|SPATA5L1;nc|ENSG00000171763|Q9BVQ7-2|AFG2B;nc|ENSG00000171763|Q9BVQ7-3|AFG2B	ENSG00000171763|ENST00000305560|SPATA5L1	ENSG00000171763|ENST00000305560|SPATA5L1	MULTI-SECPEP	A375_MHC_IP_R1	1	393.2595520019531	3	392.875516	1175.60472	-0.086181	-3.3858E-05	-0.52644	-0.00020683	-0.61262	-0.00024068	392.87497391362456	25.67	0.71052	25.67	25.357	26.068	0					18	13	2	0	0	0	0.69179	1	7471	7471		21.59	16.543	1	3799000			9744	7636	6855	6917	9532	9532					0.0239414710647452
EENYGVKTTY	10	Unmodified	_EENYGVKTTY_					0	0	0		nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENST00000570284.1_1_16:28840745-28842349:+|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MULTI-MSMS	A375_MHC_IP_R1	1	602.6795043945312	2	602.280043	1202.54553	-0.41332	-0.00024894	0.20529	0.00012364	-0.20803	-0.00012529	602.280114640282	34.254	0.75778	34.254	33.95	34.708	0					44	14	4	0	0	0	3.1676E-05	1	11243	11243		165.58	127.41	1	23333000			9745	7310	6856	6918	9533	9533					-0.047637936983846885
EENYGVKTTY	10	Unmodified	_EENYGVKTTY_					0	0	0		nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENST00000570284.1_1_16:28840745-28842349:+|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MULTI-MSMS	A375_MHC_IP_R2	2	602.6795654296875	2	602.280043	1202.54553	-0.99582	-0.00059976	0.14738	8.8764E-05	-0.84844	-0.000511	602.2800707409264	33.672	0.80941	34.425	34.095	34.904	0.75225					49	15	4	0	0	0	3.2532E-05	1	12055	12055		180.74	134.72	1	23192000			9746	7310	6856	6918	9534	9534					-0.047637936983846885
EENYKISY	8	Unmodified	_EENYKISY_					0	0	0			REV__nc|ENSG00000134982|P25054-2|APC	REV__nc|ENSG00000134982|P25054-2|APC	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1535034179688	2	523.245472	1044.47639	-0.54406	-0.00028468	-1.5169	-0.00079373	-2.061	-0.0010784	523.7463144480615	36.229	0.25517	36.229	36.084	36.339	0					5	4	2	0	0	0	0.91495	1	12075	12075		12.532	0	1	573790	+		9747	18815	6857	6919	9535	9535					-0.04406832927270443
EEPADWQTY	9	Unmodified	_EEPADWQTY_					0	0	0		nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	A375_MHC_IP_R1	1	570.6714477539062	2	569.738011	1137.46147	-0.21728	-0.00012379	-0.035087	-1.999E-05	-0.25236	-0.00014378	569.7379503738766	62.325	2.0993	62.325	61.839	63.939	0					97	40	5	0	0	0	0.58047	1	22670	22670		15.847	4.3525	1	173010000			9748	14690	6858	6920	9536	9536					-0.10176324795293112
EEPADWQTY	9	Unmodified	_EEPADWQTY_					0	0	0		nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-SECPEP	A375_MHC_IP_R1	1	569.231689453125	2	569.738011	1137.46147	-0.19257	-0.00010972	-0.16673	-9.4991E-05	-0.3593	-0.00020471	569.7378219710816	44.139	0.56144	44.139	43.859	44.42	0					17	10	2	0	0	0	0.65246	1	15289	15289		21.747	17.417	1	4111200			9749	14690	6858	6920	9537	9537					-0.10176324795293112
EEPCNEPR	8	Unmodified	_EEPCNEPR_					0	0	0			REV__nc|ENSG00000101336|P08631-3|HCK	REV__nc|ENSG00000101336|P08631-3|HCK	MULTI-SECPEP	A375_MHC_IP_R1	1	973.5674438476562	1	973.404371	972.397095	0.54689	0.00053235	1.2658	0.0012322	1.8127	0.0017645	973.4021647109444	115.27	0.40573	115.27	114.97	115.38	0					10	7	2	0	0	0	0.972	1	42185	42185		12.532	0	1	4788900	+		9750	17161	6859	6921	9538	9538					-0.0902080315307785
EEPDLKTGLY	10	Unmodified	_EEPDLKTGLY_					0	0	0		ENSG00000186834|ENST00000332499|HEXIM1	ENSG00000186834|ENST00000332499|HEXIM1	ENSG00000186834|ENST00000332499|HEXIM1	MULTI-MSMS	A375_MHC_IP_R2	2	583.1926879882812	2	582.792786	1163.57102	-0.7069	-0.00041198	-0.20292	-0.00011826	-0.90982	-0.00053023	582.792588189482	57.558	1.1175	58.307	57.762	58.879	0.74894					34	21	2	0	0	0	0.47255	1	21712	21712		29.841	15.002	1	6909100			9751	8781	6860	6922	9539	9539					-0.004223191759365363
EEPDSASVKTY	11	Unmodified	_EEPDSASVKTY_					0	0	0		ENST00000478863.5_1_19:10666000-10676642:-|nuORF;ENSG00000129347|ENST00000312962|KRI1;ENST00000537363.5_1_19:10670171-10670590:-|nuORF	ENST00000478863.5_1_19:10666000-10676642:-|nuORF	ENST00000478863.5_1_19:10666000-10676642:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	613.7031860351562	2	613.282783	1224.55101	-0.48253	-0.00029592	-0.19989	-0.00012259	-0.68242	-0.00041851	613.2826426101398	27.163	0.55262	27.163	26.828	27.381	0					14	10	2	0	0	0	0.90652	1	8110	8110		24.882	24.882	1	2903700			9752	4188	6861	6923	9540	9540					-0.052281149065720456
EEPDSASVKTY	11	Unmodified	_EEPDSASVKTY_					0	0	0		ENST00000478863.5_1_19:10666000-10676642:-|nuORF;ENSG00000129347|ENST00000312962|KRI1;ENST00000537363.5_1_19:10670171-10670590:-|nuORF	ENST00000478863.5_1_19:10666000-10676642:-|nuORF	ENST00000478863.5_1_19:10666000-10676642:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	613.7354125976562	2	613.282783	1224.55101	-0.89966	-0.00055175	0.0058223	3.5707E-06	-0.89384	-0.00054818	613.784146663305	26.627	0.61344	27.287	27.109	27.722	0.65992					15	11	2	0	0	0	0.98069	1	9109	9109		18.721	4.3158	1	3070900			9753	4188	6861	6923	9541	9541					-0.052281149065720456
EEPEAAGDPQL	11	Unmodified	_EEPEAAGDPQL_					0	0	0		nc|ENSG00000006555|Q5TAA0-2|TTC22;ENSG00000006555|ENST00000371276|TTC22	nc|ENSG00000006555|Q5TAA0-2|TTC22	nc|ENSG00000006555|Q5TAA0-2|TTC22	MULTI-MSMS	A375_MHC_IP_R2	2	578.661376953125	2	578.26185	1154.50915	-0.55806	-0.00032271	-0.69265	-0.00040053	-1.2507	-0.00072324	578.2613102327877	24.508	0.96371	25.152	24.755	25.719	0.64368					31	18	3	0	0	0	0.63737	1	8084	8084		20.415	4.2654	1	9441500			9754	918	6862	6924	9542	9542					-0.06192670595100935
EEPEPHGTAV	10	Unmodified	_EEPEPHGTAV_					0	0	0		ENST00000482915.1_1_21:19190494-19191672:-|nuORF	ENST00000482915.1_1_21:19190494-19191672:-|nuORF	ENST00000482915.1_1_21:19190494-19191672:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	533.6455078125	2	533.246003	1064.47745	-0.47165	-0.00025151	-0.77356	-0.0004125	-1.2452	-0.000664	533.2461069548795	37.333	0.45973	37.333	37.096	37.556	0					15	8	3	0	0	0	0.90853	1	12585	12585		3.5965	0	1	3722100			9755	12533	6863	6925	9543	9543					-0.05220618558360002
EEPESFFTW	9	Unmodified	_EEPESFFTW_					0	0	0		nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;ENST00000514799.1_1_5:59755891-59756539:-|nuORF;ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP;ENST00000552169.1_1_12:107665281-107665620:+|nuORF	nc|ENSG00000119335|Q01105-3|SET;ENSG00000230667|ENST00000596516|SETSIP;ENST00000552169.1_1_12:107665281-107665620:+|nuORF	nc|ENSG00000119335|Q01105-3|SET	MULTI-MSMS	A375_MHC_IP_R1	1	586.651611328125	2	586.250754	1170.48696	-0.39344	-0.00023066	-0.18435	-0.00010808	-0.5778	-0.00033873	586.2506394213814	129.27	0.45717	129.27	129.09	129.55	0					17	8	3	0	0	0	0.0016247	1	49710	49710		147.83	69.847	1	33106000			9756	3585;9719;13386	6864	6926	9544	9544					-0.09146850272850315
EEPESFFTW	9	Unmodified	_EEPESFFTW_					0	0	0		nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;ENST00000514799.1_1_5:59755891-59756539:-|nuORF;ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP;ENST00000552169.1_1_12:107665281-107665620:+|nuORF	nc|ENSG00000119335|Q01105-3|SET;ENSG00000230667|ENST00000596516|SETSIP;ENST00000552169.1_1_12:107665281-107665620:+|nuORF	nc|ENSG00000119335|Q01105-3|SET	MULTI-MSMS	A375_MHC_IP_R2	2	586.6499633789062	2	586.250754	1170.48696	-0.58853	-0.00034503	-0.17357	-0.00010175	-0.7621	-0.00044678	586.2505322116044	129.07	0.50647	129.31	129.06	129.57	0.23946					22	9	3	0	0	0	0.0016247	1	50709	50709		147.83	103.97	1	20570000			9757	3585;9719;13386	6864	6926	9545	9545					-0.09146850272850315
EEPESSGGEED	11	Unmodified	_EEPESSGGEED_					0	0	0			REV__nc|ENSG00000213901|Q6PIS1-2|SLC23A3	REV__nc|ENSG00000213901|Q6PIS1-2|SLC23A3	MSMS	A375_MHC_IP_R2	2	582.7191772460938	2	582.712387	1163.41022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.988	1	88.72	88.22	89.22	0.7318								0	0	0	0.16179	1	33477	33477		9.3831	4.6271	1		+		9758	22632	6865	6927	9546	9546					-0.16494738350638727
EEPEVKVIPD	10	Unmodified	_EEPEVKVIPD_					0	0	0		ENSG00000128052|ENST00000263923|KDR	ENSG00000128052|ENST00000263923|KDR	ENSG00000128052|ENST00000263923|KDR	MULTI-SECPEP	A375_MHC_IP_R1	1	578.2001342773438	2	577.800611	1153.58667	-0.49793	-0.0002877	-0.081638	-4.7171E-05	-0.57956	-0.00033487	577.8004467158788	26.164	0.50684	26.164	25.917	26.423	0					14	9	2	0	0	0	0.83355	1	7794	7794		22.736	3.4793	1	3104200			9759	4121	6866	6928	9547	9547					0.016019673410937685
EEPFQCPEW	9	Unmodified	_EEPFQCPEW_					0	0	0		ZNF425|p.C559W|1|0.32|ENSG00000204947|chr7:149104194-149104194|G/C|missense_variant	ZNF425|p.C559W|1|0.32|ENSG00000204947|chr7:149104194-149104194|G/C|missense_variant	ZNF425|p.C559W|1|0.32|ENSG00000204947|chr7:149104194-149104194|G/C|missense_variant	MSMS	A375_MHC_IP_R1	1	582.61181640625	2	582.736957	1163.45936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.1	1	110.1	109.6	110.6	0								0	0	0	0.15486	1	40375	40375		12.532	3.1841	1				9760	30217	6867	6929	9548	9548					-0.11583076804731718
EEPFTEEPN	9	Unmodified	_EEPFTEEPN_					0	0	0		ENSG00000145975|ENST00000274673|FAM217A	ENSG00000145975|ENST00000274673|FAM217A	ENSG00000145975|ENST00000274673|FAM217A	MULTI-SECPEP	A375_MHC_IP_R1	1	1090.9464111328125	1	1091.45276	1090.44548	-0.25841	-0.00028204	2.1696	0.002368	1.9112	0.002086	1091.4560781585035	124.34	0.5069	124.34	124.19	124.7	0					10	9	2	0	0	0	0.76187	1	46991	46991		7.2892	3.3448	1	22736000			9761	5596	6868	6930	9549	9549					-0.09612031032179402
EEPGGRVPPRY	11	Unmodified	_EEPGGRVPPRY_					0	0	0			REV__ENST00000443842.1_1_3:50335366-50336690:-|nuORF	REV__ENST00000443842.1_1_3:50335366-50336690:-|nuORF	MSMS	A375_MHC_IP_R1	1	419.6192932128906	3	419.550921	1255.63093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.417	1	40.417	39.917	40.917	0								0	0	0	0.16182	1	13888	13888		9.2438	0.79947	1		+		9762	24829	6869	6931	9550	9550					0.013344162779503677
EEPGKGSFW	9	Unmodified	_EEPGKGSFW_					0	0	0		ENSG00000164916|ENST00000328914|FOXK1;nc|ENSG00000164916|P85037-2|FOXK1;ENST00000571160.1_1_17:80540661-80543138:+|nuORF;ENSG00000141568|ENST00000335255|FOXK2;nc|ENSG00000141568|Q01167-2|FOXK2	ENSG00000164916|ENST00000328914|FOXK1;nc|ENSG00000141568|Q01167-2|FOXK2	ENSG00000164916|ENST00000328914|FOXK1	MULTI-MSMS	A375_MHC_IP_R2	2	518.7003784179688	2	518.740357	1035.46616	-0.87262	-0.00045266	-0.069515	-3.606E-05	-0.94214	-0.00048872	518.7403297276447	54.749	0.66087	55.5	55.118	55.779	0.75075					30	12	3	0	0	0	0.53367	1	20711	20711		18.146	1.2041	1	3979100			9763	6892;14646	6870	6932	9551	9551					-0.05015395861846628
EEPGSDWSL	9	Unmodified	_EEPGSDWSL_					0	0	0			REV__nc|ENSG00000072952|Q9Y6F6-6|IRAG1	REV__nc|ENSG00000072952|Q9Y6F6-6|IRAG1	MSMS	A375_MHC_IP_R2	2	510.1669006347656	2	510.219454	1018.42436	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.007	1	57.757	57.257	58.257	0.75015								0	0	0	0.15486	1	21553	21553		8.5933	0	1		+		9764	16614	6871	6933	9552	9552					-0.08411996341055783
EEPGWTGKQ	9	Unmodified	_EEPGWTGKQ_					0	0	0			REV__ENST00000578983.1_1_17:18380198-18389672:+|nuORF	REV__ENST00000578983.1_1_17:18380198-18389672:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1032.4932861328125	1	1031.47925	1030.47197	0.10033	0.00010349	2.0201	0.0020837	2.1204	0.0021872	1031.4848695007256	109.01	0.81541	109.76	109.16	109.98	0.74684					32	15	3	0	0	0	0.55818	1	41100	41100		16.942	2.3606	1	5065800	+		9765	21109	6872	6934	9553	9553					-0.04204297350179331
EEPILWLEF	9	Unmodified	_EEPILWLEF_					0	0	0		nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1	nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1	nc|ENSG00000126391|Q9BZ67-2|FRMD8	MULTI-SECPEP	A375_MHC_IP_R1	1	588.7026977539062	2	588.30279	1174.59103	-0.58591	-0.00034469	0.79989	0.00047058	0.21398	0.00012589	588.3030073853521	135.97	0.25769	135.97	135.84	136.1	0					10	4	3	0	0	0	0.11849	1	52410	52410		78.149	58.892	1	4731800			9766	4040;14908	6873	6935	9554	9554					0.010714765546708804
EEPILWLEF	9	Unmodified	_EEPILWLEF_					0	0	0		nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1	nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1	nc|ENSG00000126391|Q9BZ67-2|FRMD8	MULTI-MSMS	A375_MHC_IP_R2	2	588.703369140625	2	588.30279	1174.59103	-0.42086	-0.00024759	1.7553	0.0010327	1.3344	0.00078506	588.3033268755021	135.89	0.3604	136	135.74	136.1	0.11134					9	6	3	0	0	0	0.4867	1	53414	53414		20.454	8.213	1	1688700			9767	4040;14908	6873	6935	9555	9555					0.010714765546708804
EEPISLHTW	9	Unmodified	_EEPISLHTW_					0	0	0		ENST00000318410.11_1_8:126096196-126103965:-|nuORF	ENST00000318410.11_1_8:126096196-126103965:-|nuORF	ENST00000318410.11_1_8:126096196-126103965:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	556.6300659179688	2	556.274564	1110.53457	-0.55268	-0.00030744	0.43412	0.00024149	-0.11856	-6.595E-05	556.274665222243	74.418	0.65876	74.418	74.146	74.805	0					36	12	4	0	0	0	0.39388	1	27029	27029		32.305	32.305	1	10661000			9768	10672	6874	6936	9556	9556					-0.016271512820139833
EEPISLHTW	9	Unmodified	_EEPISLHTW_					0	0	0		ENST00000318410.11_1_8:126096196-126103965:-|nuORF	ENST00000318410.11_1_8:126096196-126103965:-|nuORF	ENST00000318410.11_1_8:126096196-126103965:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	557.2628784179688	2	556.274564	1110.53457	-0.73824	-0.00041067	0.40355	0.00022449	-0.33469	-0.00018618	556.2746928991407	73.686	0.66325	74.421	74.141	74.805	0.73541					31	12	3	0	0	0	0.022213	1	27975	27975		81.613	41.656	1	12639000			9769	10672	6874	6936	9557	9557					-0.016271512820139833
EEPKIDFRVY	10	Unmodified	_EEPKIDFRVY_					0	0	0		nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;ENSG00000104447|ENST00000395715|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	MULTI-MSMS	A375_MHC_IP_R1	1	432.95941162109375	3	432.559194	1294.65575	-0.49512	-0.00021417	0.50917	0.00022024	0.014046	6.0758E-06	432.55936739302615	67.481	0.8147	67.481	66.99	67.804	0					43	15	4	0	0	0	0.36067	1	24406	24406		25.997	21.881	1	2638000			9770	2514	6875	6937	9558	9558					0.020210513606571112
EEPKIDFRVY	10	Unmodified	_EEPKIDFRVY_					0	0	0		nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;ENSG00000104447|ENST00000395715|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	MULTI-SECPEP	A375_MHC_IP_R1	1	648.7167358398438	2	648.335153	1294.65575	-0.66327	-0.00043002	-1.0598	-0.00068713	-1.7231	-0.0011171	648.3347947122822	67.508	0.66048	67.508	67.194	67.854	0					20	12	2	0	0	0	0.71464	1	24444	24444		33.445	20.402	1	947240			9771	2514	6875	6937	9559	9559					0.020210513606571112
EEPKIDFRVY	10	Unmodified	_EEPKIDFRVY_					0	0	0		nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;ENSG00000104447|ENST00000395715|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	MULTI-MSMS	A375_MHC_IP_R2	2	432.959228515625	3	432.559194	1294.65575	-0.32331	-0.00013985	-0.079931	-3.4575E-05	-0.40324	-0.00017442	432.55931175657844	66.838	1.017	67.574	67.035	68.052	0.73631					49	19	3	0	0	0	0.36067	1	25247	25247		25.997	18.96	1	3697900			9772	2514	6875	6937	9560	9560					0.020210513606571112
EEPKIDFRVY	10	Unmodified	_EEPKIDFRVY_					0	0	0		nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;ENSG00000104447|ENST00000395715|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	MULTI-MSMS	A375_MHC_IP_R2	2	648.7359008789062	2	648.335153	1294.65575	-0.75755	-0.00049114	-0.15297	-9.9178E-05	-0.91052	-0.00059032	648.3355354791404	66.913	0.71152	67.649	67.189	67.9	0.73631					20	13	2	0	0	0	0.51509	1	25371	25371		27.223	15.729	1	1471500			9773	2514	6875	6937	9561	9561					0.020210513606571112
EEPKILDDEPK	11	Unmodified	_EEPKILDDEPK_					0	0	0			REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B	REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B	MULTI-MSMS	A375_MHC_IP_R1	1	438.62591552734375	3	438.22588	1311.65581	-0.18453	-8.0866E-05	0.35462	0.0001554	0.17009	7.4536E-05	438.22593227235797	58.389	0.60973	58.389	58.024	58.633	0					26	11	3	0	0	0	0.72801	1	20933	20933		5.8681	0	1	4876300	+		9774	19991	6876	6938	9562	9562					0.012450065700022606
EEPKKILI	8	Unmodified	_EEPKKILI_					0	0	0			REV__nc|ENSG00000182771|Q9ULK0-2|GRID1	REV__nc|ENSG00000182771|Q9ULK0-2|GRID1	MULTI-SECPEP	A375_MHC_IP_R2	2	485.9704895019531	2	485.302593	968.590633	-0.64463	-0.00031284	-0.60977	-0.00029592	-1.2544	-0.00060876	485.30222465846174	75.16	0.25173	75.897	75.721	75.973	0.73752					8	4	2	0	0	0	0.92636	1	28513	28513		23.148	0	1	2575800	+		9775	21707	6877	6939	9563	9563					0.10508101625475774
EEPKLQFSY	9	Unmodified	_EEPKLQFSY_					0	0	0		nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-5|API5;ENST00000397055.2_1_2:178862247-178862907:-|nuORF	nc|ENSG00000166181|Q9BZZ5-3|API5	nc|ENSG00000166181|Q9BZZ5-3|API5	MULTI-SECPEP	A375_MHC_IP_R1	1	571.1821899414062	2	570.782222	1139.54989	-0.016362	-9.3394E-06	1.0051	0.00057371	0.98876	0.00056437	570.7822162696712	69.067	0.60901	69.067	68.717	69.326	0					31	11	4	0	0	0	0.24324	1	25070	25070		38.176	17.722	1	2719000			9776	7037	6878	6940	9564	9564					-0.01430284484808908
EEPKQASVTY	10	Unmodified	_EEPKQASVTY_					0	0	0		ENSG00000162512|ENST00000339394|SDC3	ENSG00000162512|ENST00000339394|SDC3	ENSG00000162512|ENST00000339394|SDC3	MULTI-SECPEP	A375_MHC_IP_R1	1	576.6826171875	2	576.282586	1150.55062	-0.50109	-0.00028877	-0.0068353	-3.9391E-06	-0.50793	-0.00029271	576.2825292906143	26.47	0.75775	26.47	26.17	26.928	0					34	14	3	0	0	0	0.039352	1	7886	7886		100.09	47.822	1	17144000			9777	6541	6879	6941	9565	9565					-0.018634898357504426
EEPKQASVTY	10	Unmodified	_EEPKQASVTY_					0	0	0		ENSG00000162512|ENST00000339394|SDC3	ENSG00000162512|ENST00000339394|SDC3	ENSG00000162512|ENST00000339394|SDC3	MULTI-SECPEP	A375_MHC_IP_R2	2	576.6819458007812	2	576.282586	1150.55062	-0.60678	-0.00034968	-0.1009	-5.8148E-05	-0.70769	-0.00040783	576.282527094452	25.962	0.76235	26.622	26.347	27.109	0.65992					35	14	3	0	0	0	0.15413	1	8714	8714		76.825	20.648	1	15955000			9778	6541	6879	6941	9566	9566					-0.018634898357504426
EEPLAGRTW	9	Unmodified	_EEPLAGRTW_					0	0	0		ENST00000529704.5_1_11:67119307-67120167:-|nuORF;ENST00000534515.1_1_11:67119307-67119526:-|nuORF	ENST00000529704.5_1_11:67119307-67120167:-|nuORF	ENST00000529704.5_1_11:67119307-67120167:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	530.1671142578125	2	529.766906	1057.51926	-0.46554	-0.00024663	-0.096287	-5.101E-05	-0.56183	-0.00029764	529.7669233560617	51.238	0.4579	51.238	51.017	51.475	0					16	8	3	0	0	0	0.39434	1	18213	18213		24.991	5.552	1	2525000			9779	13136	6880	6942	9567	9567					-0.00720018079186957
EEPLAGRTW	9	Unmodified	_EEPLAGRTW_					0	0	0		ENST00000529704.5_1_11:67119307-67120167:-|nuORF;ENST00000534515.1_1_11:67119307-67119526:-|nuORF	ENST00000529704.5_1_11:67119307-67120167:-|nuORF	ENST00000529704.5_1_11:67119307-67120167:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	530.166259765625	2	529.766906	1057.51926	-0.72628	-0.00038476	0.14455	7.6576E-05	-0.58174	-0.00030818	529.7669481265315	50.532	0.55795	51.286	50.955	51.513	0.75406					17	10	2	0	0	0	0.19747	1	19006	19006		38.176	6.0586	1	3329900			9780	13136	6880	6942	9568	9568					-0.00720018079186957
EEPLLKIAI	9	Unmodified	_EEPLLKIAI_					0	0	0			REV__nc|ENSG00000115841|Q96LZ7-3|RMDN2	REV__nc|ENSG00000115841|Q96LZ7-3|RMDN2	MULTI-SECPEP	A375_MHC_IP_R2	2	512.6949462890625	2	513.3157	1024.61685	-0.68369	-0.00035095	0.65405	0.00033574	-0.029637	-1.5213E-05	513.3159737826265	92.831	0.45546	93.571	93.341	93.797	0.73902					10	8	2	0	0	0	0.62767	1	35307	35307		11.64	0	1	1092200	+		9781	17918	6881	6943	9569	9569					0.1055237079692688
EEPLPEHPQDG	11	Unmodified	_EEPLPEHPQDG_					0	0	0		ENST00000495425.6_1_17:19458825-19480863:+|nuORF;ENSG00000142494|ENST00000270570|SLC47A1;nc|ENSG00000142494|Q96FL8-3|SLC47A1	ENST00000495425.6_1_17:19458825-19480863:+|nuORF	ENST00000495425.6_1_17:19458825-19480863:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	624.6807861328125	2	624.280574	1246.5466	-0.62317	-0.00038903	0.69366	0.00043304	0.070487	4.4004E-05	624.2811538920203	24.572	0.50581	24.572	24.397	24.903	0					15	9	3	0	0	0	0.98748	1	7052	7052		5.2969	0	1	3946100			9782	5310	6882	6944	9570	9570					-0.06681579329506349
EEPLPLLPSEE	11	Unmodified	_EEPLPLLPSEE_					0	0	0			REV__KMT2D|p.P2390Rfs*36|1|0.37|ENSG00000167548|chr12:49040601-49040601|G/-|frameshift_variant	REV__KMT2D|p.P2390Rfs*36|1|0.37|ENSG00000167548|chr12:49040601-49040601|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	627.72119140625	2	626.819001	1251.62345	-0.70125	-0.00043955	1.0105	0.00063342	0.30929	0.00019387	626.8195960416348	87.101	0.55692	87.834	87.56	88.117	0.733					22	10	3	0	0	0	0.73016	1	33118	33118		8.7454	0	1	3304000	+		9783	26866	6883	6945	9571	9571					0.007702191669977765
EEPLPLLPSEE	11	Unmodified	_EEPLPLLPSEE_					0	0	0			REV__KMT2D|p.P2390Rfs*36|1|0.37|ENSG00000167548|chr12:49040601-49040601|G/-|frameshift_variant	REV__KMT2D|p.P2390Rfs*36|1|0.37|ENSG00000167548|chr12:49040601-49040601|G/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	626.819001	1251.62345	-0.5895	-0.00036951	1.1939	0.00074833	0.60436	0.00037882	626.8198723901758	87.739	0.56052	87.739	87.491	88.052	0	-0.04751	0.0001229	NaN	8.7454	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3508900	+		9784	26866	6883	6945							0.007702191669977765
EEPLPTKKW	9	Unmodified	_EEPLPTKKW_					0	0	0		nc|ENSG00000163297|P58335-2|ANTXR2;ENSG00000163297|ENST00000403729|ANTXR2;nc|ENSG00000163297|P58335|ANTXR2	nc|ENSG00000163297|P58335-2|ANTXR2	nc|ENSG00000163297|P58335-2|ANTXR2	MULTI-MSMS	A375_MHC_IP_R1	1	376.9413146972656	3	376.541363	1126.60226	0.34978	0.00013171	-0.3235	-0.00012181	0.026287	9.8981E-06	376.5411216637333	33.976	0.50523	33.976	33.597	34.103	0					9	6	2	0	0	0	0.41879	1	11159	11159		17.863	11.233	1	4717400			9785	6645	6884	6946	9572	9572					0.04402298648778924
EEPLSQLPEL	10	Unmodified	_EEPLSQLPEL_					0	0	0			REV__ENST00000368902.1_1_1:151138565-151138990:+|nuORF	REV__ENST00000368902.1_1_1:151138565-151138990:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	385.9361572265625	3	385.536166	1153.58667	-0.57392	-0.00022127	0.65007	0.00025063	0.076158	2.9362E-05	385.5362653087419	25.483	0.96745	26.127	25.77	26.737	0.64368					36	18	3	0	0	0	0.90513	1	8526	8526		7.4771	0	1	9596300	+		9786	24003	6885	6947	9573	9573					0.01601967341116506
EEPLSQLPEL	10	Unmodified	_EEPLSQLPEL_					0	0	0			REV__ENST00000368902.1_1_1:151138565-151138990:+|nuORF	REV__ENST00000368902.1_1_1:151138565-151138990:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	578.2001953125	2	577.800611	1153.58667	-0.63849	-0.00036892	-0.20782	-0.00012008	-0.84631	-0.000489	577.8004566584298	25.538	0.50725	26.191	25.986	26.493	0.65314					16	9	2	0	0	0	0.91442	1	8574	8574		11.495	0	1	2990600	+		9787	24003	6885	6947	9574	9574					0.01601967341116506
EEPLYVNAKQY	11	Unmodified	_EEPLYVNAKQY_					0	0	0		nc|ENSG00000001167|P23511-2|NFYA;ENSG00000001167|ENST00000341376|NFYA	nc|ENSG00000001167|P23511-2|NFYA	nc|ENSG00000001167|P23511-2|NFYA	MULTI-MSMS	A375_MHC_IP_R1	1	677.7378540039062	2	677.337892	1352.66123	-0.46042	-0.00031186	0.30416	0.00020602	-0.15626	-0.00010584	677.3379029153562	51.773	0.35559	51.773	51.575	51.93	0					12	6	2	0	0	0	0.00030845	1	18406	18406		122.18	105.07	1	3086400			9788	843	6886	6948	9575	9575					-0.0009926984751018608
EEPLYVNAKQY	11	Unmodified	_EEPLYVNAKQY_					0	0	0		nc|ENSG00000001167|P23511-2|NFYA;ENSG00000001167|ENST00000341376|NFYA	nc|ENSG00000001167|P23511-2|NFYA	nc|ENSG00000001167|P23511-2|NFYA	MULTI-MSMS	A375_MHC_IP_R2	2	677.73779296875	2	677.337892	1352.66123	-0.80818	-0.00054741	0.2023	0.00013703	-0.60588	-0.00041038	677.338109883212	51.188	0.40528	51.94	51.713	52.118	0.75225					13	7	2	0	0	0	0.00036444	1	19282	19282		114.2	98.053	1	3946000			9789	843	6886	6948	9576	9576					-0.0009926984751018608
EEPMGDDDYD	10	Unmodified	_EEPMGDDDYD_					0	0	0		ENSG00000130749|ENST00000253048|ZC3H4;ENST00000594019.5_1_19:47570396-47593253:-|nuORF	ENSG00000130749|ENST00000253048|ZC3H4	ENSG00000130749|ENST00000253048|ZC3H4	MULTI-SECPEP	A375_MHC_IP_R2	2	1184.89306640625	1	1185.38884	1184.38156	0.35712	0.00042332	-2.12	-0.0025131	-1.7629	-0.0020897	1185.3901992903936	115.59	0.91449	116.28	115.78	116.7	0.68999					33	17	4	0	0	0	0.93799	1	43428	43428		6.7232	0.96273	1	8020600			9790	4277	6887	6949	9577	9577					-0.203251792514493
EEPMSSPDEPG	11	Unmodified	_EEPMSSPDEPG_					0	0	0			REV__ENSG00000074416|ENST00000265052|MGLL	REV__ENSG00000074416|ENST00000265052|MGLL	MULTI-SECPEP	A375_MHC_IP_R1	1	587.2324829101562	2	587.732068	1173.44958	-0.13416	-7.8848E-05	-0.22733	-0.00013361	-0.36149	-0.00021246	587.7325497034708	51.556	0.86359	51.556	51.119	51.982	0					46	16	4	0	0	0	0.95991	1	18248	18248		13.042	0	1	13262000	+		9791	16635	6888	6950	9578	9578					-0.13020309600779
EEPPRRANH	9	Unmodified	_EEPPRRANH_					0	0	0		nc|ENSG00000148219|O75129-2|ASTN2;nc|ENSG00000148219|O75129-3|ASTN2;ENSG00000148219|ENST00000313400|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	MULTI-SECPEP	A375_MHC_IP_R1	1	1105.2244873046875	1	1105.54973	1104.54245	-0.52592	-0.00058144	-1.2919	-0.0014283	-1.8178	-0.0020097	1105.5431207147924	123.67	0.20076	123.67	123.54	123.74	0					7	3	3	0	0	0	0.65246	1	46234	46234		21.747	3.6003	1	19231000			9792	5725	6889	6951	9579	9579					-0.0056357924186158925
EEPPYIHFL	9	Unmodified	_EEPPYIHFL_					0	0	0		ENSG00000172725|ENST00000341356|CORO1B	ENSG00000172725|ENST00000341356|CORO1B	ENSG00000172725|ENST00000341356|CORO1B	MULTI-SECPEP	A375_MHC_IP_R1	1	572.2318115234375	2	572.787307	1143.56006	-0.17704	-0.00010141	1.4037	0.00080403	1.2267	0.00070262	572.7883685969848	104.84	0.55692	104.84	104.74	105.3	0					12	10	2	0	0	0	0.64653	1	38531	38531		9.3474	4.5914	1	755010			9793	7730	6890	6952	9580	9580					-0.005976767595711863
EEPQEEEVY	9	Unmodified	_EEPQEEEVY_					0	0	0			REV__nc|ENSG00000141627|Q7RTS9-2|DYM	REV__nc|ENSG00000141627|Q7RTS9-2|DYM	MULTI-MSMS	A375_MHC_IP_R1	1	576.6408081054688	2	576.240583	1150.46661	-0.16695	-9.6202E-05	0.6089	0.00035087	0.44195	0.00025467	576.2412220166235	87.911	0.76445	87.911	87.542	88.307	0					30	14	3	0	0	0	0.35581	1	32234	32234		26.884	6.43	1	5478400	+		9794	19282	6891	6953	9581	9581					-0.10260065723332445
EEPQEEEVY	9	Unmodified	_EEPQEEEVY_					0	0	0			REV__nc|ENSG00000141627|Q7RTS9-2|DYM	REV__nc|ENSG00000141627|Q7RTS9-2|DYM	MULTI-SECPEP	A375_MHC_IP_R1	1	575.6574096679688	2	576.240583	1150.46661	-0.16695	-9.6202E-05	0.6089	0.00035087	0.44195	0.00025467	576.2412220166235	87.911	0.76445	87.911	87.542	88.307	0					30	14	3	0	0	0	0.58271	1	32220	32220		26.884	7.6267	1	5478400	+		9795	19282	6891	6953	9582	9582					-0.10260065723332445
EEPQEEEVY	9	Unmodified	_EEPQEEEVY_					0	0	0			REV__nc|ENSG00000141627|Q7RTS9-2|DYM	REV__nc|ENSG00000141627|Q7RTS9-2|DYM	MULTI-MSMS	A375_MHC_IP_R2	2	576.6407470703125	2	576.240583	1150.46661	-0.064186	-3.6986E-05	0.23617	0.00013609	0.17198	9.9104E-05	576.2411287561041	87.206	0.70592	87.939	87.612	88.318	0.733					30	13	3	0	0	0	0.35581	2	33147	33122;33147		26.884	12.045	1	4765000	+		9796	19282	6891	6953	9583;9584	9584					-0.10260065723332445
EEPQEEEVY	9	Unmodified	_EEPQEEEVY_					0	0	0			REV__nc|ENSG00000141627|Q7RTS9-2|DYM	REV__nc|ENSG00000141627|Q7RTS9-2|DYM	MULTI-SECPEP	A375_MHC_IP_R2	2	575.656982421875	2	576.240583	1150.46661	-0.064186	-3.6986E-05	0.23617	0.00013609	0.17198	9.9104E-05	576.2411287561041	87.206	0.70592	87.939	87.612	88.318	0.733					30	13	3	0	0	0	0.47368	1	33168	33168		34.102	10.954	1	4765000	+		9797	19282	6891	6953	9585	9585					-0.10260065723332445
EEPQEHIH	8	Unmodified	_EEPQEHIH_					0	0	0		nc|ENSG00000157077|O95405-2|ZFYVE9;ENSG00000157077|ENST00000287727|ZFYVE9	nc|ENSG00000157077|O95405-2|ZFYVE9	nc|ENSG00000157077|O95405-2|ZFYVE9	MULTI-SECPEP	A375_MHC_IP_R1	1	509.6529846191406	2	509.733063	1017.45157	-0.41416	-0.00021111	-0.35424	-0.00018057	-0.7684	-0.00039168	509.73293157833336	33.49	0.35657	33.49	33.291	33.648	0					11	6	2	0	0	0	0.97144	1	10889	10889		5.2307	5.2307	1	3018800			9798	6226	6892	6954	9586	9586					-0.056454680099932375
EEPQEHIH	8	Unmodified	_EEPQEHIH_					0	0	0		nc|ENSG00000157077|O95405-2|ZFYVE9;ENSG00000157077|ENST00000287727|ZFYVE9	nc|ENSG00000157077|O95405-2|ZFYVE9	nc|ENSG00000157077|O95405-2|ZFYVE9	MULTI-MATCH	A375_MHC_IP_R2	2		2	509.733063	1017.45157	-0.80991	-0.00041284	-0.16368	-8.3431E-05	-0.97358	-0.00049627	509.73289368938555	32.717	0.55922	33.454	33.265	33.825	0.73691	-0.017852	9.877E-05	NaN	5.2307	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3544900			9799	6226	6892	6954							-0.056454680099932375
EEPQGWELPF	10	Unmodified	_EEPQGWELPF_					0	0	0		ENST00000465318.5_1_2:46609148-46609564:+|nuORF	ENST00000465318.5_1_2:46609148-46609564:+|nuORF	ENST00000465318.5_1_2:46609148-46609564:+|nuORF	MSMS	A375_MHC_IP_R1	1	616.3807983398438	2	616.285128	1230.5557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.533	1	89.533	89.033	90.033	0								0	0	0	0.15283	1	32890	32890		11.64	0	1				9800	12240	6893	6955	9587	9587					-0.05035185973156331
EEPQHVLLRY	10	Unmodified	_EEPQHVLLRY_					0	0	0		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MULTI-MSMS	A375_MHC_IP_R1	1	428.9631652832031	3	428.562938	1282.66699	-0.25943	-0.00011118	0.19855	8.5093E-05	-0.060876	-2.6089E-05	428.56294837287885	47.029	0.76925	47.029	46.647	47.416	0					36	14	4	0	0	0	0.21482	1	16514	16514		47.732	36.214	1	17883000			9801	878	6894	6956	9588	9588					0.03695873454807952
EEPQHVLLRY	10	Unmodified	_EEPQHVLLRY_					0	0	0		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MULTI-SECPEP	A375_MHC_IP_R1	1	642.740234375	2	642.340769	1282.66699	-0.65994	-0.00042391	-0.085415	-5.4865E-05	-0.74535	-0.00047877	642.3407290085281	47.029	0.4125	47.029	46.85	47.263	0					13	7	2	0	0	0	0.37302	1	16562	16562		47.594	43.066	1	3497900			9802	878	6894	6956	9589	9589					0.03695873454807952
EEPQHVLLRY	10	Unmodified	_EEPQHVLLRY_					0	0	0		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MULTI-MSMS	A375_MHC_IP_R2	2	428.9626770019531	3	428.562938	1282.66699	-0.10699	-4.5853E-05	-0.15904	-6.8157E-05	-0.26603	-0.00011401	428.56281958715556	46.25	0.55792	47.015	46.704	47.262	0.76519					31	10	4	0	0	0	0.21482	1	17290	17290		47.732	36.214	1	14528000			9803	878	6894	6956	9590	9590					0.03695873454807952
EEPQHVLLRY	10	Unmodified	_EEPQHVLLRY_					0	0	0		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MULTI-MSMS	A375_MHC_IP_R2	2	642.74072265625	2	642.340769	1282.66699	-0.62902	-0.00040404	0.37059	0.00023804	-0.25843	-0.000166	642.3409532478483	46.218	0.35347	46.983	46.805	47.159	0.76519					11	6	2	0	0	0	0.069075	1	17333	17333		80.676	53.047	1	3010800			9804	878	6894	6956	9591	9591					0.03695873454807952
EEPRATLGAE	10	Unmodified	_EEPRATLGAE_					0	0	0		ENST00000537638.6_1_12:57905855-57911076:+|nuORF	ENST00000537638.6_1_12:57905855-57911076:+|nuORF	ENST00000537638.6_1_12:57905855-57911076:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	537.166748046875	2	536.767103	1071.51965	-0.70713	-0.00037957	-0.42598	-0.00022865	-1.1331	-0.00060822	536.766836643197	46.306	0.40109	46.306	46.094	46.495	0					13	7	2	0	0	0	0.87043	1	16261	16261		20.415	2.0414	1	2441900			9805	13251	6895	6957	9592	9592					-0.01324643149973781
EEPRATLGAE	10	Unmodified	_EEPRATLGAE_					0	0	0		ENST00000537638.6_1_12:57905855-57911076:+|nuORF	ENST00000537638.6_1_12:57905855-57911076:+|nuORF	ENST00000537638.6_1_12:57905855-57911076:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1669921875	2	536.767103	1071.51965	-0.89692	-0.00048143	0.027926	1.499E-05	-0.86899	-0.00046644	536.7670802243716	45.533	0.40381	46.298	46.099	46.503	0.76519					12	7	2	0	0	0	0.60238	1	17030	17030		26.268	0	1	1779600			9806	13251	6895	6957	9593	9593					-0.01324643149973781
EEPRGPELGS	10	Unmodified	_EEPRGPELGS_					0	0	0		nc|ENSG00000029534|P16157-14|ANK1;nc|ENSG00000029534|P16157-8|ANK1;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-21|ANK1;nc|ENSG00000029534|P16157|ANK1;ENSG00000029534|ENST00000289734|ANK1;nc|ENSG00000029534|P16157-16|ANK1;nc|ENSG00000029534|P16157-5|ANK1;nc|ENSG00000029534|P16157-10|ANK1;ENST00000524227.5_1_8:41525962-41555361:-|nuORF	nc|ENSG00000029534|P16157-14|ANK1	nc|ENSG00000029534|P16157-14|ANK1	MULTI-SECPEP	A375_MHC_IP_R2	2	536.1585693359375	2	535.759278	1069.504	-0.92245	-0.00049421	-0.093043	-4.9849E-05	-1.0155	-0.00054406	535.75913931026	27.066	0.35849	27.745	27.587	27.945	0.67857					9	6	2	0	0	0	0.6774	1	9258	9258		27.629	0	1	2233100			9807	1105	6896	6958	9594	9594					-0.027969296670335098
EEPRIQLQKGE	11	Unmodified	_EEPRIQLQKGE_					0	0	0		nc|ENSG00000023041|Q9H6R6-2|ZDHHC6;ENSG00000023041|ENST00000369405|ZDHHC6	nc|ENSG00000023041|Q9H6R6-2|ZDHHC6	nc|ENSG00000023041|Q9H6R6-2|ZDHHC6	MULTI-MSMS	A375_MHC_IP_R1	1	664.2532348632812	2	663.854241	1325.69393	-0.43131	-0.00028633	-0.48695	-0.00032326	-0.91826	-0.00060959	664.3553316817292	20.46	0.45833	20.46	20.232	20.69	0					13	8	2	0	0	0	0.73795	1	5242	5242		3.2813	3.2813	1	2412900			9808	1071	6897	6959	9595	9595					0.044109372753155185
EEPRRWPQA	9	Unmodified	_EEPRRWPQA_					0	0	0		ENST00000477564.5_1_22:42956217-42967210:+|nuORF	ENST00000477564.5_1_22:42956217-42967210:+|nuORF	ENST00000477564.5_1_22:42956217-42967210:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1169.58251953125	1	1168.58578	1167.5785	0.006511	7.6086E-06	-1.6617	-0.0019418	-1.6552	-0.0019342	1169.5873435492017	118.91	0.3055	118.91	118.73	119.03	0					7	5	2	0	0	0	0.65721	1	43803	43803		10.824	2.0785	1	13541000			9809	12443	6898	6960	9596	9596					0.0014187793499331747
EEPRVIDLW	9	Unmodified	_EEPRVIDLW_					0	0	0		ENSG00000163956|ENST00000650182|LRPAP1;ENST00000515119.5_1_4:3517776-3534065:-|nuORF;ENST00000296325.9_1_4:3514703-3533784:-|nuORF	ENSG00000163956|ENST00000650182|LRPAP1	ENSG00000163956|ENST00000650182|LRPAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	579.2031860351562	2	578.803488	1155.59242	0.01643	9.5096E-06	0.072607	4.2025E-05	0.089037	5.1535E-05	578.8032267543388	99.831	0.45566	100.59	100.42	100.88	0.76278					17	8	3	0	0	0	0.28216	1	37865	37865		49.933	28.396	1	1629900			9810	6753	6899	6961	9597	9597					0.020851106434292888
EEPSMSVSEEL	11	Unmodified	_EEPSMSVSEEL_					0	0	0			REV__ENST00000570285.1_1_13:76140977-76197422:+|nuORF	REV__ENST00000570285.1_1_13:76140977-76197422:+|nuORF	MSMS	A375_MHC_IP_R1	1	618.756103515625	2	618.768651	1235.52275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.75	1	133.75	133.25	134.25	0								0	0	0	0.16249	1	51579	51579		5.7319	2.1354	1		+		9811	18056	6900	6962	9598	9598					-0.08559180878160078
EEPSYTQDND	10	Unmodified	_EEPSYTQDND_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MSMS	A375_MHC_IP_R2	2	599.1769409179688	2	599.230747	1196.44694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.563	1	55.314	54.814	55.814	0.75075								0	0	0	0.15207	1	20591	20591		13.906	3.0821	1				9812	4343	6901	6963	9599	9599					-0.14342441734083877
EEPTKEVW	8	Unmodified	_EEPTKEVW_					0	0	0			REV__tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1	REV__tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	508.93115234375	2	509.248015	1016.48148	-0.82889	-0.00042211	-1.2891	-0.00065649	-2.118	-0.0010786	509.2473095662051	33.011	0.25556	33.748	33.569	33.825	0.73691					6	4	2	0	0	0	0.94587	1	11765	11765		20.454	2.3186	1	552410	+		9813	28655	6902	6964	9600	9600					-0.026105290646682988
EEPTVIKKY	9	Unmodified	_EEPTVIKKY_					0	0	0		ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENSG00000089006|ENST00000377759|SNX5;ENST00000547000.1_1_12:101462478-101462640:+|nuORF	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	369.94140625	3	369.541252	1105.60193	-0.010011	-3.6994E-06	-0.074181	-2.7413E-05	-0.084192	-3.1112E-05	369.54126375785717	26.043	2.1726	26.043	25.664	27.836	0					125	42	6	0	0	0	0.030891	2	7677	7677;7979		74.2	20.796	1	978980000			9814	12644	6903	6965	9601;9602	9601					0.05334878928965736
EEPTVIKKY	9	Unmodified	_EEPTVIKKY_					0	0	0		ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENSG00000089006|ENST00000377759|SNX5;ENST00000547000.1_1_12:101462478-101462640:+|nuORF	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	554.2080688476562	2	553.808239	1105.60193	-0.86021	-0.00047639	0.11543	6.3926E-05	-0.74478	-0.00041247	553.8082586408464	26.044	1.2616	26.044	25.816	27.078	0					70	24	5	0	0	0	0.0085451	1	7680	7680		152.89	49.532	1	360460000			9815	12644	6903	6965	9603	9603					0.05334878928965736
EEPTVIKKY	9	Unmodified	_EEPTVIKKY_					0	0	0		ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENSG00000089006|ENST00000377759|SNX5;ENST00000547000.1_1_12:101462478-101462640:+|nuORF	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	369.9410400390625	3	369.541252	1105.60193	-0.15533	-5.7399E-05	0.015842	5.8542E-06	-0.13948	-5.1545E-05	369.54130464767945	25.459	1.7822	26.103	25.873	27.655	0.64368					104	34	5	0	0	0	0.020087	4	8465	8465;8689;8711;8987		83.429	25.707	1	919540000			9816	12644	6903	6965	9604;9605;9606;9607	9604					0.05334878928965736
EEPTVIKKY	9	Unmodified	_EEPTVIKKY_					0	0	0		ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENSG00000089006|ENST00000377759|SNX5;ENST00000547000.1_1_12:101462478-101462640:+|nuORF	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	554.2073974609375	2	553.808239	1105.60193	-1.2242	-0.00067798	0.4018	0.00022252	-0.82242	-0.00045546	553.8084328261523	25.459	1.2197	26.103	25.873	27.093	0.64368					68	23	5	0	0	0	0.014055	1	8472	8472		110.67	42.594	1	303990000			9817	12644	6903	6965	9608	9608					0.05334878928965736
EEPVHLIEQY	10	Unmodified	_EEPVHLIEQY_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1;REV__nc|ENSG00000131018|Q8NF91-7|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MSMS	A375_MHC_IP_R2	2	628.87939453125	2	628.81151	1255.60847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.886	1	49.643	49.143	50.143	0.75737								0	0	0	0.15348	1	18360	18360		15.847	1.9411	1		+		9818	18581;27223	6904	6966	9609	9609					-0.009112279103192122
EEPVHSTSFS	10	Unmodified	_EEPVHSTSFS_					0	0	0			REV__nc|ENSG00000085276|Q03112-5|MECOM	REV__nc|ENSG00000085276|Q03112-5|MECOM	MULTI-MSMS	A375_MHC_IP_R1	1	560.651123046875	2	560.251286	1118.48802	-0.47445	-0.00026581	-0.16657	-9.332E-05	-0.64102	-0.00035913	560.2511372484232	25.043	0.50509	25.043	24.852	25.357	0					17	9	2	0	0	0	0.55789	1	7241	7241		24.021	1.2843	1	6053600	+		9819	16833	6905	6967	9610	9610					-0.06648635903957256
EEPVHSTSFS	10	Unmodified	_EEPVHSTSFS_					0	0	0			REV__nc|ENSG00000085276|Q03112-5|MECOM	REV__nc|ENSG00000085276|Q03112-5|MECOM	MULTI-MSMS	A375_MHC_IP_R2	2	560.650390625	2	560.251286	1118.48802	-0.99922	-0.00055981	-0.14037	-7.8642E-05	-1.1396	-0.00063845	560.2511247682738	24.504	0.45535	25.148	25.009	25.465	0.64368					16	8	2	0	0	0	0.62155	1	8115	8115		19.257	3.1079	1	5775500	+		9820	16833	6905	6967	9611	9611					-0.06648635903957256
EEPVRRPQRPR	11	Unmodified	_EEPVRRPQRPR_					0	0	0		nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	MULTI-SECPEP	A375_MHC_IP_R2	2	473.6990661621094	3	473.935769	1418.78548	-0.3647	-0.00017284	-0.13389	-6.3455E-05	-0.49859	-0.0002363	474.2700157796596	137.62	0.20093	137.7	137.61	137.81	0.083969					5	3	2	0	0	0	1.0008	1	53983	53983		0.45452	0.046251	1	563060			9821	4509	6906	6968	9612	9612					0.0928366548316717
EEPVVLALDPK	11	Unmodified	_EEPVVLALDPK_					0	0	0		ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	MULTI-MSMS	A375_MHC_IP_R2	2	605.7391357421875	2	605.339904	1208.66525	-0.75066	-0.00045441	-0.084036	-5.087E-05	-0.8347	-0.00050528	605.3397829057686	20.167	0.60994	20.778	20.449	21.059	0.61029					26	11	3	0	0	0	0.69231	1	6230	6230		16.149	0	1	4106000			9822	2252	6907	6969	9613	9613					0.06926819646150761
EEPVWIGKY	9	Unmodified	_EEPVWIGKY_					0	0	0			REV__ERBB4|p.G741E|1|0.59|ENSG00000178568|chr2:211619256-211619256|C/T|missense_variant	REV__ERBB4|p.G741E|1|0.59|ENSG00000178568|chr2:211619256-211619256|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	561.1868286132812	2	560.787307	1119.56006	-0.67507	-0.00037857	-0.46295	-0.00025962	-1.138	-0.00063819	560.7870130545423	39.419	0.66156	40.194	39.914	40.575	0.77451					23	12	3	0	0	0	0.65246	1	14564	14564		15.847	0	1	9204200	+		9823	26588	6908	6970	9614	9614					0.005063232404381779
EEPYLNDPL	9	Unmodified	_EEPYLNDPL_					0	0	0			REV__ENSG00000179388|ENST00000317216|EGR3	REV__ENSG00000179388|ENST00000317216|EGR3	MULTI-MSMS	A375_MHC_IP_R1	1	546.2288208007812	2	545.258579	1088.50261	-0.33536	-0.00018286	-0.77344	-0.00042172	-1.1088	-0.00060458	545.2582620339783	71.687	1.1602	71.687	71.262	72.423	0					47	22	3	0	0	0	0.5339	1	25936	25936		18.135	0	1	29019000	+		9824	21558	6909	6971	9615	9615					-0.038105637558146555
EEQADAHFTL	10	Unmodified	_EEQADAHFTL_					0	0	0		TNFRSF4|p.S272F|1|0.28|ENSG00000186827|chr1:1211574-1211574|G/A|missense_variant	TNFRSF4|p.S272F|1|0.28|ENSG00000186827|chr1:1211574-1211574|G/A|missense_variant	TNFRSF4|p.S272F|1|0.28|ENSG00000186827|chr1:1211574-1211574|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	580.1392822265625	2	580.76456	1159.51457	-0.73941	-0.00042942	0.86179	0.00050049	0.12237	7.107E-05	580.7650477008733	26.119	0.55953	26.779	26.398	26.957	0.65992					19	10	2	0	0	0	0.88918	1	8803	8803		8.7454	8.7454	1	2501800			9825	29369	6910	6972	9616	9616					-0.05880947012633442
EEQAFLVEF	9	Unmodified	_EEQAFLVEF_					0	0	0		nc|ENSG00000152672|Q8N1N0-2|CLEC4F;ENSG00000152672|ENST00000272367|CLEC4F	nc|ENSG00000152672|Q8N1N0-2|CLEC4F	nc|ENSG00000152672|Q8N1N0-2|CLEC4F	MULTI-MSMS	A375_MHC_IP_R2	2	556.6668701171875	2	556.268947	1110.52334	-0.74017	-0.00041173	-1.8379	-0.0010224	-2.5781	-0.0014341	556.2677442862016	124.99	0.30329	125.32	125.15	125.45	0.32969					11	5	3	0	0	0	0.018261	1	48554	48554		85.642	27.92	1	34072000			9826	5978	6911	6973	9617	9617					-0.027499733761487732
EEQAFLVEF	9	Unmodified	_EEQAFLVEF_					0	0	0		nc|ENSG00000152672|Q8N1N0-2|CLEC4F;ENSG00000152672|ENST00000272367|CLEC4F	nc|ENSG00000152672|Q8N1N0-2|CLEC4F	nc|ENSG00000152672|Q8N1N0-2|CLEC4F	MULTI-MATCH	A375_MHC_IP_R1	1		2	556.268947	1110.52334	-0.56238	-0.00031284	-2.5862	-0.0014386	-3.1486	-0.0017514	556.2674033136979	125.48	0.50399	125.48	125.25	125.75	0	0.07768	-0.00075008	NaN	85.642	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84261000			9827	5978	6911	6973							-0.027499733761487732
EEQAFRAAQE	10	Unmodified	_EEQAFRAAQE_					0	0	0		nc|ENSG00000111834|Q5TD94-2|RSPH4A;ENSG00000111834|ENST00000229554|RSPH4A	nc|ENSG00000111834|Q5TD94-2|RSPH4A	nc|ENSG00000111834|Q5TD94-2|RSPH4A	MSMS	A375_MHC_IP_R2	2	589.7085571289062	2	589.775459	1177.53637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.825	1	39.6	39.1	40.1	0.77451								0	0	0	0.14673	1	14310	14310		24.021	2.2739	1				9828	3032	6912	6974	9618	9618					-0.04530142264047754
EEQAVRPKY	9	Unmodified	_EEQAVRPKY_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	MULTI-SECPEP	A375_MHC_IP_R1	1	374.3086853027344	3	373.864617	1118.57202	0.151	5.6454E-05	-0.00485	-1.8132E-06	0.14615	5.4641E-05	373.86460424127915	19.343	0.3335	19.343	19.238	19.571	0					12	6	3	0	0	0	0.55359	1	4720	4720		20.415	8.9198	1	14086000			9829	4546	6913	6975	9619	9619					0.017479399836020093
EEQAVYHLL	9	Unmodified	_EEQAVYHLL_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	A375_MHC_IP_R1	1	551.6809692382812	2	551.282389	1100.55022	-0.43872	-0.00024186	-0.78715	-0.00043394	-1.2259	-0.0006758	551.2819644161597	72.65	0.60851	72.65	72.423	73.031	0					21	11	3	0	0	0	0.01574	1	26441	26441		88.904	47.064	1	4022300			9830	1791	6914	6976	9620	9620					0.003971352350617963
EEQDLVWKF	9	Unmodified	_EEQDLVWKF_					0	0	0		ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	MULTI-SECPEP	A375_MHC_IP_R2	2	597.6953735351562	2	597.295496	1192.57644	-0.43296	-0.0002586	-0.32864	-0.00019629	-0.7616	-0.0004549	597.2957065038295	95.623	0.81332	96.373	96.093	96.906	0.75045					36	15	3	0	0	0	0.019499	1	36306	36306		114.2	65.856	1	4575300			9831	1668	6915	6977	9621	9621					-0.012145955935011443
EEQEWQSI	8	Unmodified	_EEQEWQSI_					0	0	0			REV__ENSG00000196110|ENST00000591998|ZNF699	REV__ENSG00000196110|ENST00000591998|ZNF699	MULTI-SECPEP	A375_MHC_IP_R2	2	524.9776611328125	2	524.732729	1047.4509	-0.48964	-0.00025693	-0.31192	-0.00016368	-0.80156	-0.00042061	524.732432713869	64.734	0.5091	65.473	65.155	65.664	0.73869					15	9	2	0	0	0	0.972	1	24613	24613		2.5775	0.27475	1	1914800	+		9832	22159	6916	6978	9622	9622					-0.0709230744969318
EEQFILSQV	9	Unmodified	_EEQFILSQV_					0	0	0		nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3;ENST00000479399.5_1_9:34616009-34616228:-|nuORF	nc|ENSG00000137100|O75935-2|DCTN3	nc|ENSG00000137100|O75935-2|DCTN3	MSMS	A375_MHC_IP_R1	1	546.68994140625	2	546.782222	1091.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.778	1	73.778	73.278	74.278	0								0	0	0	0.15468	1	26871	26871		13.906	0.86358	1				9833	4859	6917	6979	9623	9623					0.007777155151870829
EEQGKVYVY	9	Unmodified	_EEQGKVYVY_					0	0	0		ENSG00000213949|ENST00000282588|ITGA1;ENST00000504669.5_1_5:52201585-52248278:+|nuORF	ENSG00000213949|ENST00000282588|ITGA1	ENSG00000213949|ENST00000282588|ITGA1	MULTI-MSMS	A375_MHC_IP_R1	1	558.174072265625	2	557.774396	1113.53424	-0.39169	-0.00021848	-0.21726	-0.00012118	-0.60895	-0.00033966	557.7742238962636	35.898	0.76552	35.898	35.573	36.339	0					34	14	4	0	0	0	0.0099105	1	11964	11964		118.89	64.121	1	12292000			9834	9592	6918	6980	9624	9624					-0.017985710018592727
EEQGKVYVY	9	Unmodified	_EEQGKVYVY_					0	0	0		ENSG00000213949|ENST00000282588|ITGA1;ENST00000504669.5_1_5:52201585-52248278:+|nuORF	ENSG00000213949|ENST00000282588|ITGA1	ENSG00000213949|ENST00000282588|ITGA1	MULTI-SECPEP	A375_MHC_IP_R2	2	558.1741943359375	2	557.774396	1113.53424	-0.97301	-0.00054272	0.27172	0.00015156	-0.70129	-0.00039116	557.7745772514955	35.195	0.65579	35.958	35.677	36.333	0.76338					34	12	4	0	0	0	0.025235	1	12728	12728		107.19	51.01	1	15299000			9835	9592	6918	6980	9625	9625					-0.017985710018592727
EEQGQQLQW	9	Unmodified	_EEQGQQLQW_					0	0	0			REV__nc|ENSG00000115657|Q9NP58-4|ABCB6	REV__nc|ENSG00000115657|Q9NP58-4|ABCB6	MULTI-MSMS	A375_MHC_IP_R2	2	573.6954345703125	2	573.264727	1144.5149	-0.34819	-0.00019961	-0.27465	-0.00015745	-0.62284	-0.00035705	573.2652385172474	44.651	0.25418	45.42	45.289	45.543	0.76909					7	4	2	0	0	0	0.46038	1	16696	16696		21.747	5.8995	1	735790	+		9836	17904	6919	6981	9626	9626					-0.051575272927721016
EEQHKSHW	8	Unmodified	_EEQHKSHW_					0	0	0		ENST00000535229.1_1_6:166195147-166399619:-|nuORF	ENST00000535229.1_1_6:166195147-166399619:-|nuORF	ENST00000535229.1_1_6:166195147-166399619:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	541.1456909179688	2	540.746505	1079.47846	-1.2005	-0.00064918	0.59765	0.00032318	-0.60287	-0.000326	540.7464383196002	38.349	0.6623	39.124	38.739	39.401	0.77451					22	12	3	0	0	0	0.72761	1	14149	14149		26.341	3.605	1	3451400			9837	13225	6920	6982	9627	9627					-0.058103593988107605
EEQILRKY	8	Unmodified	_EEQILRKY_					0	0	0			REV__ENSG00000068650|ENST00000375645|ATP11A	REV__ENSG00000068650|ENST00000375645|ATP11A	MULTI-SECPEP	A375_MHC_IP_R1	1	539.2141723632812	2	539.798206	1077.58186	-0.52114	-0.00028131	0.42121	0.00022737	-0.099925	-5.3939E-05	539.7983887609347	35.363	0.45855	35.363	35.013	35.472	0					13	8	2	0	0	0	0.972	1	11755	11755		5.2307	0	1	979000	+		9838	16542	6921	6983	9628	9628					0.0461712798901317
EEQKNLHFF	9	Unmodified	_EEQKNLHFF_					0	0	0		ENSG00000115216|ENST00000379852|NRBP1;ENST00000460499.5_1_2:27659579-27664676:+|nuORF;NRBP1|p.S428Lfs*8|1|0.29|ENSG00000115216|chr2:27440886-27440887|-/C|frameshift_variant	ENSG00000115216|ENST00000379852|NRBP1	ENSG00000115216|ENST00000379852|NRBP1	MULTI-MSMS	A375_MHC_IP_R1	1	398.2647399902344	3	397.864617	1190.57202	-0.18174	-7.2309E-05	0.4313	0.0001716	0.24956	9.9292E-05	397.864723906038	50.38	0.86604	50.38	49.998	50.864	0					51	16	5	0	0	0	0.16661	1	17798	17798		29.082	21.136	1	23197000			9839	3282	6922	6984	9629	9629					-0.015640600164033458
EEQKNLHFF	9	Unmodified	_EEQKNLHFF_					0	0	0		ENSG00000115216|ENST00000379852|NRBP1;ENST00000460499.5_1_2:27659579-27664676:+|nuORF;NRBP1|p.S428Lfs*8|1|0.29|ENSG00000115216|chr2:27440886-27440887|-/C|frameshift_variant	ENSG00000115216|ENST00000379852|NRBP1	ENSG00000115216|ENST00000379852|NRBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	596.6934204101562	2	596.293288	1190.57202	-0.42932	-0.000256	0.48047	0.0002865	0.051148	3.0499E-05	596.293381757273	50.382	0.61388	50.382	50.049	50.663	0					29	11	3	0	0	0	0.53098	1	17806	17806		36.127	20.28	1	10628000			9840	3282	6922	6984	9630	9630					-0.015640600164033458
EEQKNLHFF	9	Unmodified	_EEQKNLHFF_					0	0	0		ENSG00000115216|ENST00000379852|NRBP1;ENST00000460499.5_1_2:27659579-27664676:+|nuORF;NRBP1|p.S428Lfs*8|1|0.29|ENSG00000115216|chr2:27440886-27440887|-/C|frameshift_variant	ENSG00000115216|ENST00000379852|NRBP1	ENSG00000115216|ENST00000379852|NRBP1	MULTI-MSMS	A375_MHC_IP_R2	2	398.26446533203125	3	397.864617	1190.57202	-0.37927	-0.0001509	0.27657	0.00011004	-0.1027	-4.0861E-05	397.8646914630594	49.515	0.863	50.273	49.894	50.757	0.75737					50	16	5	0	0	0	0.021919	1	18551	18551		62.573	37.691	1	31679000			9841	3282	6922	6984	9631	9631					-0.015640600164033458
EEQKNLHFF	9	Unmodified	_EEQKNLHFF_					0	0	0		ENSG00000115216|ENST00000379852|NRBP1;ENST00000460499.5_1_2:27659579-27664676:+|nuORF;NRBP1|p.S428Lfs*8|1|0.29|ENSG00000115216|chr2:27440886-27440887|-/C|frameshift_variant	ENSG00000115216|ENST00000379852|NRBP1	ENSG00000115216|ENST00000379852|NRBP1	MULTI-MATCH	A375_MHC_IP_R2	2		2	596.293288	1190.57202	-0.85687	-0.00051094	0.32978	0.00019665	-0.52709	-0.0003143	596.2932869195079	49.515	0.6578	50.272	49.944	50.602	0.75737	-0.054993	-8.4812E-05	NaN	43.858	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10315000			9842	3282	6922	6984							-0.015640600164033458
EEQKQILFF	9	Unmodified	_EEQKQILFF_					0	0	0		ENSG00000104611|ENST00000265807|SH2D4A	ENSG00000104611|ENST00000265807|SH2D4A	ENSG00000104611|ENST00000265807|SH2D4A	MULTI-MSMS	A375_MHC_IP_R1	1	591.7135009765625	2	591.313689	1180.61282	-0.26473	-0.00015654	0.030348	1.7945E-05	-0.23438	-0.00013859	591.3136420893932	96.711	0.81171	96.711	96.376	97.187	0					33	15	3	0	0	0	0.012843	1	35485	35485		92.653	43.099	1	12567000			9843	2521	6923	6985	9632	9632					0.029742813032271442
EEQKQILFF	9	Unmodified	_EEQKQILFF_					0	0	0		ENSG00000104611|ENST00000265807|SH2D4A	ENSG00000104611|ENST00000265807|SH2D4A	ENSG00000104611|ENST00000265807|SH2D4A	MULTI-SECPEP	A375_MHC_IP_R2	2	590.6727905273438	2	591.313689	1180.61282	-0.47403	-0.0002803	0.28083	0.00016606	-0.1932	-0.00011424	591.3138593503609	95.876	0.86389	96.627	96.144	97.008	0.75045					48	16	4	0	0	0	0.11849	1	36459	36459		68.081	20.332	1	12352000			9844	2521	6923	6985	9633	9633					0.029742813032271442
EEQLHKKAQ	9	Unmodified	_EEQLHKKAQ_					0	0	0			REV__nc|ENSG00000144674|Q13439-3|GOLGA4	REV__nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-SECPEP	A375_MHC_IP_R1	1	370.96441650390625	3	370.86825	1109.58292	0.32112	0.00011909	0.10428	3.8675E-05	0.4254	0.00015777	370.8684278448932	28.424	0.55544	28.424	28.088	28.643	0					14	9	2	0	0	0	0.67539	1	8833	8833		16.149	0	1	1595200	+		9845	19439	6924	6986	9634	9634					0.03251342357884823
EEQLLKHGW	9	Unmodified	_EEQLLKHGW_					0	0	0		ENSG00000160818|ENST00000368232|GPATCH4;nc|ENSG00000160818|Q5T3I0-3|GPATCH4;ENST00000473910.5_1_1:156568103-156568838:-|nuORF;ENST00000531900.1_1_1:156568015-156568838:-|nuORF;ENST00000498756.5_1_1:156566177-156568838:-|nuORF;ENST00000506832.6_1_1:156567604-156568838:-|nuORF	ENSG00000160818|ENST00000368232|GPATCH4	ENSG00000160818|ENST00000368232|GPATCH4	MULTI-SECPEP	A375_MHC_IP_R1	1	380.93316650390625	3	380.532979	1138.57711	0.78502	0.00029873	0.3854	0.00014666	1.1704	0.00044538	380.5330453416805	44.62	0.56046	44.62	44.267	44.827	0					27	10	4	0	0	0	0.58271	1	15575	15575		19.362	6.4893	1	6476800			9846	6445	6925	6987	9635	9635					0.013362438462309001
EEQLLKHGW	9	Unmodified	_EEQLLKHGW_					0	0	0		ENSG00000160818|ENST00000368232|GPATCH4;nc|ENSG00000160818|Q5T3I0-3|GPATCH4;ENST00000473910.5_1_1:156568103-156568838:-|nuORF;ENST00000531900.1_1_1:156568015-156568838:-|nuORF;ENST00000498756.5_1_1:156566177-156568838:-|nuORF;ENST00000506832.6_1_1:156567604-156568838:-|nuORF	ENSG00000160818|ENST00000368232|GPATCH4	ENSG00000160818|ENST00000368232|GPATCH4	MULTI-SECPEP	A375_MHC_IP_R1	1	570.6962890625	2	570.29583	1138.57711	0.13961	7.9617E-05	1.0153	0.00057902	1.1549	0.00065863	570.2964181788773	44.603	0.55983	44.603	44.318	44.878	0					23	10	3	0	0	0	0.0085579	1	15572	15572		149.91	120.83	1	7707600			9847	6445	6925	6987	9636	9636					0.013362438462309001
EEQLLKHGW	9	Unmodified	_EEQLLKHGW_					0	0	0		ENSG00000160818|ENST00000368232|GPATCH4;nc|ENSG00000160818|Q5T3I0-3|GPATCH4;ENST00000473910.5_1_1:156568103-156568838:-|nuORF;ENST00000531900.1_1_1:156568015-156568838:-|nuORF;ENST00000498756.5_1_1:156566177-156568838:-|nuORF;ENST00000506832.6_1_1:156567604-156568838:-|nuORF	ENSG00000160818|ENST00000368232|GPATCH4	ENSG00000160818|ENST00000368232|GPATCH4	MULTI-MSMS	A375_MHC_IP_R2	2	380.9330139160156	3	380.532979	1138.57711	0.20166	7.6739E-05	0.36702	0.00013966	0.56868	0.0002164	380.53303776100904	43.739	0.40296	44.508	44.329	44.732	0.7691					22	7	4	0	0	0	0.19747	1	16300	16300		38.176	22.927	1	8975800			9848	6445	6925	6987	9637	9637					0.013362438462309001
EEQLLKHGW	9	Unmodified	_EEQLLKHGW_					0	0	0		ENSG00000160818|ENST00000368232|GPATCH4;nc|ENSG00000160818|Q5T3I0-3|GPATCH4;ENST00000473910.5_1_1:156568103-156568838:-|nuORF;ENST00000531900.1_1_1:156568015-156568838:-|nuORF;ENST00000498756.5_1_1:156566177-156568838:-|nuORF;ENST00000506832.6_1_1:156567604-156568838:-|nuORF	ENSG00000160818|ENST00000368232|GPATCH4	ENSG00000160818|ENST00000368232|GPATCH4	MULTI-SECPEP	A375_MHC_IP_R2	2	570.6792602539062	2	570.29583	1138.57711	-0.11754	-6.7034E-05	1.7784	0.0010142	1.6608	0.00094716	570.2971390785623	43.728	0.90967	44.497	43.873	44.782	0.7691					33	17	3	0	0	0	0.011405	1	16347	16347		122.18	93.098	1	9543600			9849	6445	6925	6987	9638	9638					0.013362438462309001
EEQLPLRAGY	10	Unmodified	_EEQLPLRAGY_					0	0	0		ENSG00000104611|ENST00000265807|SH2D4A;nc|ENSG00000104611|Q9H788-2|SH2D4A	ENSG00000104611|ENST00000265807|SH2D4A	ENSG00000104611|ENST00000265807|SH2D4A	MULTI-SECPEP	A375_MHC_IP_R1	1	588.486083984375	2	588.306395	1174.59824	-0.21067	-0.00012394	-0.087802	-5.1654E-05	-0.29847	-0.00017559	588.3065981146641	56.88	0.40861	56.88	56.65	57.059	0					12	7	2	0	0	0	0.35635	1	20402	20402		60.074	20.124	1	1454700			9850	2521	6926	6988	9639	9639					0.01792209155087221
EEQLPLRAGY	10	Unmodified	_EEQLPLRAGY_					0	0	0		ENSG00000104611|ENST00000265807|SH2D4A;nc|ENSG00000104611|Q9H788-2|SH2D4A	ENSG00000104611|ENST00000265807|SH2D4A	ENSG00000104611|ENST00000265807|SH2D4A	MULTI-MATCH	A375_MHC_IP_R2	2		2	588.306395	1174.59824	-0.81702	-0.00048066	-0.16311	-9.5961E-05	-0.98014	-0.00057662	588.306467732692	56.202	0.35758	56.952	56.693	57.051	0.75015	0.035974	-4.2406E-05	NaN	60.074	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1536100			9851	2521	6926	6988							0.01792209155087221
EEQLRPKLL	9	Unmodified	_EEQLRPKLL_					0	0	0		ENSG00000119401|ENST00000450136|TRIM32	ENSG00000119401|ENST00000450136|TRIM32	ENSG00000119401|ENST00000450136|TRIM32	MULTI-MSMS	A375_MHC_IP_R1	1	376.2922668457031	3	375.892396	1124.65536	0.36039	0.00013547	-0.32981	-0.00012397	0.030579	1.1495E-05	375.8921832169886	46.22	0.4033	46.22	45.992	46.395	0					12	7	2	0	0	0	0.64971	1	16216	16216		11.495	4.393	1	2452100			9852	3589	6927	6989	9640	9640					0.09801676431470696
EEQLRPKLL	9	Unmodified	_EEQLRPKLL_					0	0	0		ENSG00000119401|ENST00000450136|TRIM32	ENSG00000119401|ENST00000450136|TRIM32	ENSG00000119401|ENST00000450136|TRIM32	MULTI-MSMS	A375_MHC_IP_R2	2	376.29229736328125	3	375.892396	1124.65536	0.19797	7.4416E-05	-0.30045	-0.00011294	-0.10248	-3.8523E-05	375.8922836213305	45.323	0.405	46.089	45.796	46.201	0.76519					12	7	2	0	0	0	0.59266	1	16930	16930		15.248	4.449	1	1962300			9853	3589	6927	6989	9641	9641					0.09801676431470696
EEQMGLGHAF	10	Unmodified	_EEQMGLGHAF_					0	0	0		tr|U7SM87|U7SM87_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01864PE=4SV=1	tr|U7SM87|U7SM87_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01864PE=4SV=1	tr|U7SM87|U7SM87_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01864PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	559.7035522460938	2	559.750398	1117.48624	0.026581	1.4879E-05	-0.30582	-0.00017118	-0.27924	-0.0001563	559.7498518292524	44.719	0.40573	44.719	44.523	44.928	0					10	7	2	0	0	0	0.55789	1	15646	15646		24.021	0.87215	1	1229800			9854	29523	6928	6990	9642	9642					-0.06779968193563946
EEQNWHSGGM	10	Unmodified	_EEQNWHSGGM_					0	0	0			REV__ENST00000500337.6_1_5:43453844-43453880:-|nuORF	REV__ENST00000500337.6_1_5:43453844-43453880:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	588.1322021484375	2	587.732737	1173.45092	-0.13416	-7.8848E-05	-1.3651	-0.00080231	-1.4993	-0.00088116	587.7325497034708	51.556	0.86359	51.556	51.119	51.982	0					46	16	4	0	0	0	0.55789	1	18233	18233		24.021	3.5669	1	13262000	+		9855	25487	6929	6991	9643	9643					-0.12886630721345682
EEQPPFGVY	9	Unmodified	_EEQPPFGVY_					0	0	0		ENSG00000176248|ENST00000323927|ANAPC2;nc|ENSG00000176248|Q9UJX6-2|ANAPC2;ENST00000483432.1_1_9:140070142-140074912:-|nuORF	ENSG00000176248|ENST00000323927|ANAPC2	ENSG00000176248|ENST00000323927|ANAPC2	MULTI-MSMS	A375_MHC_IP_R1	1	533.6461181640625	2	533.248015	1064.48148	-0.63276	-0.00033742	-0.15174	-8.0914E-05	-0.7845	-0.00041833	533.2478680961956	87.979	0.91782	87.979	87.441	88.358	0					25	17	2	0	0	0	0.27715	1	32244	32244		32.305	14.171	1	2677300			9856	8011	6930	6992	9644	9644					-0.048185290646415524
EEQPPFGVY	9	Unmodified	_EEQPPFGVY_					0	0	0		ENSG00000176248|ENST00000323927|ANAPC2;nc|ENSG00000176248|Q9UJX6-2|ANAPC2;ENST00000483432.1_1_9:140070142-140074912:-|nuORF	ENSG00000176248|ENST00000323927|ANAPC2	ENSG00000176248|ENST00000323927|ANAPC2	MULTI-MSMS	A375_MHC_IP_R2	2	533.6473999023438	2	533.248015	1064.48148	-0.62906	-0.00033545	0.14562	7.7652E-05	-0.48344	-0.00025779	533.2479164198054	87.23	0.85769	87.963	87.612	88.469	0.73301					22	16	2	0	0	0	0.46038	1	33175	33175		21.747	13.836	1	1748900			9857	8011	6930	6992	9645	9645					-0.048185290646415524
EEQPSGEEEE	10	Unmodified	_EEQPSGEEEE_					0	0	0			REV__nc|ENSG00000180900|Q14160-2|SCRIB	REV__nc|ENSG00000180900|Q14160-2|SCRIB	MSMS	A375_MHC_IP_R2	2	581.6646118164062	2	581.722755	1161.43096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.038	1	31.756	31.256	32.256	0.71857								0	0	0	0.15158	1	10953	10953		14.838	0	1		+		9858	21626	6931	6993	9646	9646					-0.1433014797096348
EEQQALQKKL	10	Unmodified	_EEQQALQKKL_					0	0	0		nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENST00000471212.5_1_9:35684790-35689844:-|nuORF	nc|ENSG00000198467|P07951-2|TPM2	nc|ENSG00000198467|P07951-2|TPM2	MULTI-MSMS	A375_MHC_IP_R1	1	405.96282958984375	3	405.562827	1213.66665	-0.07085	-2.8734E-05	0.8677	0.00035191	0.79685	0.00032317	405.5627355499609	21.787	0.55774	21.787	21.555	22.113	0					24	10	4	0	0	0	0.019617	1	5762	5762		85.764	41.372	1	15788000		+	9859	14852	6932	6994	9647	9647					0.06836453734968018
EEQQALQKKL	10	Unmodified	_EEQQALQKKL_					0	0	0		nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENST00000471212.5_1_9:35684790-35689844:-|nuORF	nc|ENSG00000198467|P07951-2|TPM2	nc|ENSG00000198467|P07951-2|TPM2	MULTI-SECPEP	A375_MHC_IP_R1	1	608.240478515625	2	607.840602	1213.66665	-0.032694	-1.9873E-05	-0.21677	-0.00013176	-0.24946	-0.00015163	607.8403895927304	21.761	0.30543	21.761	21.606	21.911	0					11	5	3	0	0	0	0.012511	1	5778	5778		114.19	72.231	1	3433800		+	9860	14852	6932	6994	9648	9648					0.06836453734968018
EEQQALQKKL	10	Unmodified	_EEQQALQKKL_					0	0	0		nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENST00000471212.5_1_9:35684790-35689844:-|nuORF	nc|ENSG00000198467|P07951-2|TPM2	nc|ENSG00000198467|P07951-2|TPM2	MULTI-SECPEP	A375_MHC_IP_R2	2	405.9626770019531	3	405.562827	1213.66665	-0.3142	-0.00012743	-0.062238	-2.5241E-05	-0.37644	-0.00015267	405.56277285530814	20.609	0.86517	21.22	20.701	21.566	0.61029					45	16	4	0	0	0	0.55307	1	6346	6346		25.997	20.129	1	4692700		+	9861	14852	6932	6994	9649	9649					0.06836453734968018
EEQQALQKKL	10	Unmodified	_EEQQALQKKL_					0	0	0		nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENST00000471212.5_1_9:35684790-35689844:-|nuORF	nc|ENSG00000198467|P07951-2|TPM2	nc|ENSG00000198467|P07951-2|TPM2	MULTI-SECPEP	A375_MHC_IP_R2	2	608.2399291992188	2	607.840602	1213.66665	-0.74784	-0.00045457	0.076219	4.6329E-05	-0.67162	-0.00040824	607.8406934160705	20.6	0.50614	21.21	20.907	21.413	0.61029					15	9	2	0	0	0	0.70528	1	6451	6451		20.415	13.313	1	1149200		+	9862	14852	6932	6994	9650	9650					0.06836453734968018
EEQQDILSKF	10	Unmodified	_EEQQDILSKF_					0	0	0		ENSG00000178950|ENST00000314167|GAK;nc|ENSG00000178950|O14976-2|GAK;ENST00000509566.1_1_4:844107-866085:-|nuORF	ENSG00000178950|ENST00000314167|GAK	ENSG00000178950|ENST00000314167|GAK	MULTI-MSMS	A375_MHC_IP_R2	2	619.2086791992188	2	618.808968	1235.60338	-0.63089	-0.0003904	-0.41564	-0.0002572	-1.0465	-0.0006476	618.8091334423505	73.39	0.5603	74.125	73.785	74.345	0.73541					22	10	3	0	0	0	0.0050074	1	27860	27860		101.54	49.914	1	2797600			9863	8189	6933	6995	9651	9651					-0.004995317729708404
EEQQKLTKY	9	Unmodified	_EEQQKLTKY_					0	0	0			REV__ENST00000392442.6_1_12:122990076-122998315:-|nuORF	REV__ENST00000392442.6_1_12:122990076-122998315:-|nuORF	MSMS	A375_MHC_IP_R1	1	583.6715698242188	2	583.806228	1165.5979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.63	1	26.63	26.13	27.13	0								0	0	0	0.1535	1	7960	7960		15.847	1.0089	1		+		9864	17647	6934	6996	9652	9652					0.02172789435235245
EEQQRLLLY	9	Unmodified	_EEQQRLLLY_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-SECPEP	A375_MHC_IP_R2	2	596.6358032226562	2	596.322045	1190.62954	-0.45546	-0.0002716	0.42859	0.00025558	-0.026872	-1.6024E-05	596.3220764576088	68.282	0.61075	69.017	68.56	69.171	0.73511					17	11	2	0	0	0	0.40377	1	25912	25912		37.974	5.6685	1	1576300			9865	8598	6935	6997	9653	9653					0.04184782189213365
EEQQRLLLY	9	Unmodified	_EEQQRLLLY_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MATCH	A375_MHC_IP_R1	1		2	596.322045	1190.62954	-0.10745	-6.4075E-05	0.51889	0.00030943	0.41144	0.00024535	596.3218950213883	69.147	0.45632	69.147	68.819	69.275	0	0.065305	4.8027E-05	NaN	37.974	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1768000			9866	8598	6935	6997							0.04184782189213365
EEQREPEL	8	Unmodified	_EEQREPEL_					0	0	0			REV__ENSG00000178257|ENST00000327157|PRM3	REV__ENSG00000178257|ENST00000327157|PRM3	MULTI-SECPEP	A375_MHC_IP_R1	1	515.6460571289062	2	515.246003	1028.47745	-0.47388	-0.00024416	0.090421	4.6589E-05	-0.38346	-0.00019757	515.2459955339776	93.692	0.76186	93.692	93.279	94.041	0					33	14	3	0	0	0	0.95423	1	34368	34368		18.135	3.2967	1	5467700	+		9867	21500	6936	6998	9654	9654					-0.035646185583800616
EEQRFNNFL	9	Unmodified	_EEQRFNNFL_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	A375_MHC_IP_R1	1	599.6800537109375	2	598.78837	1195.56219	0.12238	7.3278E-05	0.066839	4.0023E-05	0.18922	0.0001133	598.7883111116896	69.407	0.66185	69.407	69.07	69.732	0					28	12	3	0	0	0	0.14858	1	25140	25140		46.021	46.021	1	11248000			9868	1690	6937	6999	9655	9655					-0.027772480217663542
EEQRFNNFL	9	Unmodified	_EEQRFNNFL_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-SECPEP	A375_MHC_IP_R2	2	599.188720703125	2	598.78837	1195.56219	-0.4274	-0.00025592	0.2705	0.00016197	-0.15689	-9.3946E-05	598.7885439294242	68.714	0.60674	69.449	69.07	69.677	0.73511					26	11	3	0	0	0	0.062502	1	25974	25974		92.491	69.343	1	10905000			9869	1690	6937	6999	9656	9656					-0.027772480217663542
EEQSEEGLW	9	Unmodified	_EEQSEEGLW_					0	0	0			REV__ENST00000389384.8_1_17:42273189-42274322:-|nuORF	REV__ENST00000389384.8_1_17:42273189-42274322:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	554.2075805664062	2	553.735468	1105.45638	-0.75304	-0.00041698	-0.43159	-0.00023899	-1.1846	-0.00065597	553.7351097573355	84.723	0.66487	84.723	84.442	85.107	0					18	12	2	0	0	0	0.3243	1	31181	31181		36.044	14.298	1	2978300	+		9870	24252	6938	7000	9657	9657					-0.09212628657883215
EEQSEEGLW	9	Unmodified	_EEQSEEGLW_					0	0	0			REV__ENST00000389384.8_1_17:42273189-42274322:-|nuORF	REV__ENST00000389384.8_1_17:42273189-42274322:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	554.2073364257812	2	553.735468	1105.45638	-0.69952	-0.00038735	0.11397	6.311E-05	-0.58555	-0.00032424	553.7350862936045	84.157	0.61584	84.896	84.508	85.124	0.73962					19	11	2	0	0	0	0.2264	1	32014	32014		36.044	5.8194	1	2479200	+		9871	24252	6938	7000	9658	9658					-0.09212628657883215
EEQSFYITV	9	Unmodified	_EEQSFYITV_					0	0	0			REV__ENSG00000180884|ENST00000404801|ZNF792	REV__ENSG00000180884|ENST00000404801|ZNF792	MSMS	A375_MHC_IP_R1	1	558.1799926757812	2	558.266404	1114.51826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.024	1	65.024	64.524	65.524	0								0	0	0	0.1499	1	23537	23537		21.747	4.8044	1		+		9872	21625	6939	7001	9659	9659					-0.03442277238787028
EEQSGMSTAY	10	Unmodified	_EEQSGMSTAY_					0	0	0			REV__ENST00000414406.2_1_12:20095430-20095949:+|nuORF	REV__ENST00000414406.2_1_12:20095430-20095949:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	551.6455078125	2	551.721504	1101.42845	-1.1445	-0.00063145	2.3003	0.0012691	1.1558	0.00063766	551.723204630257	59.703	0.70815	60.45	60.249	60.957	0.74714					17	13	2	0	0	0	0.6806	1	22607	22607		14.838	2.3067	1	1121300	+		9873	24507	6940	7002	9660	9660					-0.11820274909632644
EEQSGMSTAY	10	Unmodified	_EEQSGMSTAY_					0	0	0			REV__ENST00000414406.2_1_12:20095430-20095949:+|nuORF	REV__ENST00000414406.2_1_12:20095430-20095949:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	551.721504	1101.42845	-1.1445	-0.00063145	2.3003	0.0012691	1.1558	0.00063766	551.723204630257	59.703	0.70815	60.45	60.249	60.957	0.74714	-0.080891	-0.00020217	NaN	14.838	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1121300	+		9874	24507	6940	7002							-0.11820274909632644
EEQSHPARLY	10	Unmodified	_EEQSHPARLY_					0	0	0		ENST00000467294.1_1_3:50385039-50385481:-|nuORF;ENST00000461020.5_1_3:50385039-50386041:-|nuORF;ENST00000487632.5_1_3:50385039-50386411:-|nuORF;ENSG00000114388|ENST00000232501|NPRL2	ENST00000467294.1_1_3:50385039-50385481:-|nuORF	ENST00000467294.1_1_3:50385039-50385481:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	615.69873046875	2	615.299101	1228.58365	-0.61036	-0.00037556	-0.22051	-0.00013568	-0.83087	-0.00051124	615.8002590526054	23.457	0.30649	23.457	23.278	23.584	0					11	5	3	0	0	0	3.2662E-05	1	6457	6457		177.58	125.95	1	10490000			9875	12279	6941	7003	9661	9661					-0.021498629930420066
EEQSHPARLY	10	Unmodified	_EEQSHPARLY_					0	0	0		ENST00000467294.1_1_3:50385039-50385481:-|nuORF;ENST00000461020.5_1_3:50385039-50386041:-|nuORF;ENST00000487632.5_1_3:50385039-50386411:-|nuORF;ENSG00000114388|ENST00000232501|NPRL2	ENST00000467294.1_1_3:50385039-50385481:-|nuORF	ENST00000467294.1_1_3:50385039-50385481:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	410.9352111816406	3	410.53516	1228.58365	-0.23501	-9.6482E-05	0.19688	8.0825E-05	-0.038136	-1.5656E-05	410.5352228411325	23.457	0.40872	23.457	23.278	23.687	0					23	7	4	0	0	0	0.47871	1	6445	6445		37.771	29.826	1	44469000			9876	12279	6941	7003	9662	9662					-0.021498629930420066
EEQSHPARLY	10	Unmodified	_EEQSHPARLY_					0	0	0		ENST00000467294.1_1_3:50385039-50385481:-|nuORF;ENST00000461020.5_1_3:50385039-50386041:-|nuORF;ENST00000487632.5_1_3:50385039-50386411:-|nuORF;ENSG00000114388|ENST00000232501|NPRL2	ENST00000467294.1_1_3:50385039-50385481:-|nuORF	ENST00000467294.1_1_3:50385039-50385481:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	410.93524169921875	3	410.53516	1228.58365	-0.33318	-0.00013678	-0.017431	-7.1562E-06	-0.35061	-0.00014394	410.53519002948286	22.661	0.4593	23.291	23.01	23.47	0.63014					21	8	3	0	0	0	0.42311	1	7183	7183		22.775	14.489	1	14187000			9877	12279	6941	7003	9663	9663					-0.021498629930420066
EEQSHPARLY	10	Unmodified	_EEQSHPARLY_					0	0	0		ENST00000467294.1_1_3:50385039-50385481:-|nuORF;ENST00000461020.5_1_3:50385039-50386041:-|nuORF;ENST00000487632.5_1_3:50385039-50386411:-|nuORF;ENSG00000114388|ENST00000232501|NPRL2	ENST00000467294.1_1_3:50385039-50385481:-|nuORF	ENST00000467294.1_1_3:50385039-50385481:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	615.6986694335938	2	615.299101	1228.58365	-0.95729	-0.00058902	-0.06729	-4.1404E-05	-1.0246	-0.00063042	615.2988756897631	22.682	0.35751	23.312	23.062	23.42	0.63014					12	6	3	0	0	0	0.011235	1	7222	7222		124.95	84.714	1	2686500			9878	12279	6941	7003	9664	9664					-0.021498629930420066
EEQSQGSSSY	10	Unmodified	_EEQSQGSSSY_					0	0	0		nc|ENSG00000166963|P78559-2|MAP1A;ENSG00000166963|ENST00000300231|MAP1A	nc|ENSG00000166963|P78559-2|MAP1A	nc|ENSG00000166963|P78559-2|MAP1A	MSMS	A375_MHC_IP_R2	2	551.1903076171875	2	551.220182	1100.42581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.023	1	81.768	81.268	82.268	0.74474								0	0	0	0.15417	1	30767	30767		7.2892	1.0834	1				9879	7142	6942	7004	9665	9665					-0.12038407042905419
EEQSSLCHGI	10	Unmodified	_EEQSSLCHGI_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MSMS	A375_MHC_IP_R2	2	551.681396484375	2	551.745313	1101.47607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.915	1	72.649	72.149	73.149	0.73421								0	0	0	0.12316	1	27289	27289		37.974	11.09	1		+		9880	19379	6943	7005	9666	9666					-0.07060575918785617
EEQSTGPIKY	10	Unmodified	_EEQSTGPIKY_					0	0	0		ENSG00000133858|ENST00000378743|ZFC3H1;nc|ENSG00000133858|O60293-2|ZFC3H1	ENSG00000133858|ENST00000378743|ZFC3H1	ENSG00000133858|ENST00000378743|ZFC3H1	MULTI-MSMS	A375_MHC_IP_R2	2	576.2423095703125	2	576.282586	1150.55062	-0.46045	-0.00026535	0.49929	0.00028773	0.038841	2.2383E-05	576.2827431532673	33.265	0.20384	34.017	33.942	34.146	0.75225					5	3	2	0	0	0	0.60608	1	11873	11873		20.415	5.5763	1	1274200			9881	4533	6944	7006	9667	9667					-0.018634898357504426
EEQSTKMTY	9	Oxidation (M)	_EEQSTKM(Oxidation (M))TY_		EEQSTKM(1)TY		EEQSTKM(44)TY	0	0	1		ENSG00000138378|ENST00000392320|STAT4;ENST00000495849.5_1_2:191897681-192012929:-|nuORF	ENSG00000138378|ENST00000392320|STAT4	ENSG00000138378|ENST00000392320|STAT4	MULTI-MSMS	A375_MHC_IP_R1	1	566.6937866210938	2	566.744979	1131.4754	-0.33049	-0.0001873	-1.785	-0.0010117	-2.1155	-0.001199	566.743857964963	31.725	0.35648	31.725	31.565	31.921	0					9	6	2	0	0	0	0.13797	1	10164	10164		43.858	21.122	1	1050300			9882	4984	6945	7007	9668	9668		264			-0.0850741535848556
EEQSTKMTY	9	Oxidation (M)	_EEQSTKM(Oxidation (M))TY_					0	0	1		ENSG00000138378|ENST00000392320|STAT4;ENST00000495849.5_1_2:191897681-192012929:-|nuORF	ENSG00000138378|ENST00000392320|STAT4	ENSG00000138378|ENST00000392320|STAT4	MULTI-MATCH	A375_MHC_IP_R2	2		2	566.744979	1131.4754	-0.43417	-0.00024607	-3.2505	-0.0018422	-3.6847	-0.0020883	566.7430957660563	31.111	0.40723	31.829	31.618	32.026	0.71857	0.052175	-5.7038E-05	NaN	43.858	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1372000			9883	4984	6945	7007				264			-0.0850741535848556
EEQSWASGL	9	Unmodified	_EEQSWASGL_					0	0	0		ENST00000482818.1_1_22:29728015-29728231:-|nuORF	ENST00000482818.1_1_22:29728015-29728231:-|nuORF	ENST00000482818.1_1_22:29728015-29728231:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1266174316406	2	503.727446	1005.44034	-0.46638	-0.00023493	-0.32702	-0.00016473	-0.7934	-0.00039966	503.72714854314853	112.04	1.0211	112.77	112.15	113.17	0.72458					35	19	3	0	0	0	0.74651	1	42201	42201		8.5933	4.6489	1	2843900			9884	12532	6946	7008	9669	9669					-0.06216290104134714
EEQTELLIK	9	Unmodified	_EEQTELLIK_					0	0	0		tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	551.6456909179688	2	551.803154	1101.59175	-0.79859	-0.00044066	1.5567	0.00085901	0.75814	0.00041835	551.8040786766386	44.444	0.50663	45.214	44.934	45.441	0.7691					12	9	2	0	0	0	0.53748	1	16535	16535		30.637	0	1	2285200			9885	29408	6947	7009	9670	9670					0.04502271203705277
EEQVARESY	9	Unmodified	_EEQVARESY_					0	0	0		nc|ENSG00000068308|Q96G74-4|OTUD5;nc|ENSG00000068308|Q96G74-2|OTUD5;nc|ENSG00000068308|Q96G74-3|OTUD5;ENSG00000068308|ENST00000376488|OTUD5;nc|ENSG00000068308|Q96G74|OTUD5	nc|ENSG00000068308|Q96G74-4|OTUD5	nc|ENSG00000068308|Q96G74-4|OTUD5	MULTI-SECPEP	A375_MHC_IP_R2	2	556.1561279296875	2	555.756735	1109.49892	-1.1048	-0.00061401	0.61538	0.000342	-0.48945	-0.00027201	555.7570938281433	20.828	0.30482	21.439	21.262	21.566	0.61029					7	5	2	0	0	0	0.35628	1	6547	6547		60.074	25.971	1	989640			9886	1455	6948	7010	9671	9671					-0.05145233529651705
EEQVTSYVEG	10	Unmodified	_EEQVTSYVEG_					0	0	0		chr3:53235174-53238967|142|41.06|0.04|10.02|-|0|TE_info:THE1B,THE1B_dup3656,ERVL-MaLR,LTR,donor,+,53238967,53239286|TKT,None|3	chr3:53235174-53238967|142|41.06|0.04|10.02|-|0|TE_info:THE1B,THE1B_dup3656,ERVL-MaLR,LTR,donor,+,53238967,53239286|TKT,None|3	chr3:53235174-53238967|142|41.06|0.04|10.02|-|0|TE_info:THE1B,THE1B_dup3656,ERVL-MaLR,LTR,donor,+,53238967,53239286|TKT,None|3	MULTI-MSMS	A375_MHC_IP_R1	1	571.156494140625	2	570.756401	1139.49825	-0.55478	-0.00031664	1.1855	0.00067664	0.63074	0.00036	570.7569505487322	23.846	0.25367	23.846	23.737	23.991	0					7	4	2	0	0	0	0.69306	1	6676	6676		13.906	0.86358	1	4151100			9887	475	6949	7011	9672	9672					-0.06592072969397123
EEQVTSYVEG	10	Unmodified	_EEQVTSYVEG_					0	0	0		chr3:53235174-53238967|142|41.06|0.04|10.02|-|0|TE_info:THE1B,THE1B_dup3656,ERVL-MaLR,LTR,donor,+,53238967,53239286|TKT,None|3	chr3:53235174-53238967|142|41.06|0.04|10.02|-|0|TE_info:THE1B,THE1B_dup3656,ERVL-MaLR,LTR,donor,+,53238967,53239286|TKT,None|3	chr3:53235174-53238967|142|41.06|0.04|10.02|-|0|TE_info:THE1B,THE1B_dup3656,ERVL-MaLR,LTR,donor,+,53238967,53239286|TKT,None|3	MULTI-MATCH	A375_MHC_IP_R2	2		2	570.756401	1139.49825	-0.63548	-0.00036271	0.68075	0.00038854	0.045264	2.5835E-05	570.7569527686152	23.075	0.30672	23.705	23.521	23.828	0.63014	-0.070334	-0.00040394	NaN	13.906	8	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1923600			9888	475	6949	7011							-0.06592072969397123
EEQVVRYQEKW	11	Unmodified	_EEQVVRYQEKW_					0	0	0			REV__nc|ENSG00000082805|Q8IUD2-4|ERC1	REV__nc|ENSG00000082805|Q8IUD2-4|ERC1	MULTI-MSMS	A375_MHC_IP_R1	1	498.968017578125	3	498.584291	1492.73104	-0.11296	-5.6323E-05	-0.7018	-0.00034991	-0.81476	-0.00040623	498.91819354681166	21.601	0.40576	21.601	21.352	21.757	0					15	7	3	0	0	0	0.7328	1	5675	5675		6.2344	0.71106	1	1526800	+		9889	16794	6950	7012	9673	9673					0.0043860882105946075
EEQWKIFRKQL	11	Unmodified	_EEQWKIFRKQL_					0	0	0		tr|U7T304|U7T304_FUSNUTatDDNasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00528PE=4SV=1	tr|U7T304|U7T304_FUSNUTatDDNasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00528PE=4SV=1	tr|U7T304|U7T304_FUSNUTatDDNasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00528PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	753.3160400390625	2	752.917175	1503.8198	-0.87111	-0.00065587	-0.63756	-0.00048003	-1.5087	-0.0011359	752.9167485755679	131.12	0.45857	131.34	131.21	131.67	0.2142					27	8	5	0	0	0	0.73332	1	51583	51583		5.7319	1.203	1	88323000			9890	29952	6951	7013	9674	9674					0.08804068851418378
EEQWTGEPG	9	Unmodified	_EEQWTGEPG_					0	0	0			REV__ENST00000517554.1_1_18:8784664-8786368:+|nuORF	REV__ENST00000517554.1_1_18:8784664-8786368:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	517.6814575195312	2	516.717079	1031.4196	-0.74202	-0.00038342	-0.19644	-0.00010151	-0.93847	-0.00048492	516.7169225765043	86.269	0.80975	86.269	85.921	86.73	0					36	15	4	0	0	0	0.64808	1	31663	31663		11.64	0.81637	1	22103000	+		9891	25669	6952	7014	9675	9675					-0.09484880483796587
EERAILLRYR	10	Unmodified	_EERAILLRYR_					0	0	0			REV__DNAH5|p.G1288R|1|0.07|ENSG00000039139|chr5:13867965-13867965|C/T|missense_variant	REV__DNAH5|p.G1288R|1|0.07|ENSG00000039139|chr5:13867965-13867965|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	440.2857666015625	3	440.257849	1317.75172	-0.62788	-0.00027643	-0.40197	-0.00017697	-1.0298	-0.0004534	440.5920636782876	23.406	0.40439	24.037	23.878	24.283	0.63015					15	7	3	0	0	0	0.71946	1	7459	7459		3.5871	0.95582	1	4615900	+		9892	16012	6953	7015	9676	9676					0.10555243991393581
EERAIQRAECR	11	Unmodified	_EERAIQRAECR_					0	0	0		ENSG00000163617|ENST00000295878|CCDC191	ENSG00000163617|ENST00000295878|CCDC191	ENSG00000163617|ENST00000295878|CCDC191	MULTI-MSMS	A375_MHC_IP_R1	1	681.7423706054688	2	680.841142	1359.66773	-0.32916	-0.00022411	-0.5051	-0.0003439	-0.83427	-0.000568	680.8408489906955	112.33	0.76337	112.33	111.98	112.74	0					29	14	3	0	0	0	0.70919	1	41116	41116		18.373	6.8784	1	5338600			9893	6692	6954	7016	9677	9677					0.0022834483218048263
EERAVIKAY	9	Unmodified	_EERAVIKAY_					0	0	0		ENSG00000184209|ENST00000526639|SNRNP35;nc|ENSG00000184209|Q16560-2|SNRNP35	ENSG00000184209|ENST00000526639|SNRNP35	ENSG00000184209|ENST00000526639|SNRNP35	MULTI-MSMS	A375_MHC_IP_R1	1	360.6010437011719	3	360.201229	1077.58186	-0.19802	-7.1326E-05	-0.34539	-0.00012441	-0.54341	-0.00019574	360.2010868281398	26.35	0.60963	26.35	26.118	26.728	0					23	11	3	0	0	0	0.11638	1	7844	7844		47.732	20.509	1	9744200			9894	8561	6955	7017	9678	9678					0.0461712798901317
EERAVIKAY	9	Unmodified	_EERAVIKAY_					0	0	0		ENSG00000184209|ENST00000526639|SNRNP35;nc|ENSG00000184209|Q16560-2|SNRNP35	ENSG00000184209|ENST00000526639|SNRNP35	ENSG00000184209|ENST00000526639|SNRNP35	MULTI-SECPEP	A375_MHC_IP_R1	1	540.19775390625	2	539.798206	1077.58186	-0.97372	-0.00052561	0.14342	7.742E-05	-0.8303	-0.00044819	539.7983128945833	26.347	0.40496	26.347	26.17	26.575	0					13	7	2	0	0	0	0.20645	1	7851	7851		56.177	10.477	1	4604300			9895	8561	6955	7017	9679	9679					0.0461712798901317
EERAVIKAY	9	Unmodified	_EERAVIKAY_					0	0	0		ENSG00000184209|ENST00000526639|SNRNP35;nc|ENSG00000184209|Q16560-2|SNRNP35	ENSG00000184209|ENST00000526639|SNRNP35	ENSG00000184209|ENST00000526639|SNRNP35	MULTI-SECPEP	A375_MHC_IP_R2	2	540.1979370117188	2	539.798206	1077.58186	-1.3049	-0.0007044	0.25042	0.00013518	-1.0545	-0.00056922	539.7982663087066	25.712	0.45847	26.372	26.245	26.703	0.65992					14	8	2	0	0	0	0.41434	1	8659	8659		39.95	12.321	1	3927800			9896	8561	6955	7017	9680	9680					0.0461712798901317
EERDGVRFSW	10	Unmodified	_EERDGVRFSW_					0	0	0		ENSG00000100934|ENST00000307712|SEC23A;SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant;ENSG00000101310|ENST00000650089|SEC23B	ENSG00000100934|ENST00000307712|SEC23A;SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	427.93865966796875	3	427.538793	1279.59455	-0.085215	-3.6433E-05	-0.23651	-0.00010112	-0.32173	-0.00013755	427.5387154629576	57.185	0.66296	57.185	56.905	57.568	0					27	12	3	0	0	0	0.059572	1	20492	20492		64.688	44.701	1	10911000			9897	2280;2234	6956	7018	9681	9681					-0.03406460618748497
EERDGVRFSW	10	Unmodified	_EERDGVRFSW_					0	0	0		ENSG00000100934|ENST00000307712|SEC23A;SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant;ENSG00000101310|ENST00000650089|SEC23B	ENSG00000100934|ENST00000307712|SEC23A;SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	427.9384765625	3	427.538793	1279.59455	-0.52445	-0.00022422	-0.0014757	-6.3091E-07	-0.52592	-0.00022485	427.5388084784145	56.389	0.66233	57.139	56.847	57.51	0.75014					37	12	4	0	0	0	0.094079	1	21311	21311		57.477	43.958	1	9884300			9898	2280;2234	6956	7018	9682	9682					-0.03406460618748497
EERDLRKTAHI	11	Unmodified	_EERDLRKTAHI_					0	0	0			REV__ENSG00000081138|ENST00000397968|CDH7	REV__ENSG00000081138|ENST00000397968|CDH7	MULTI-SECPEP	A375_MHC_IP_R1	1	456.9852294921875	3	456.584513	1366.73171	-0.090481	-4.1312E-05	2.1428	0.00097839	2.0524	0.00093708	456.58506488851054	20.753	0.86639	20.753	20.232	21.098	0					24	16	3	0	0	0	0.99847	1	5406	5406		2.8433	0	1	1958900	+		9899	16768	6957	7019	9683	9683					0.06301448260819598
EERDPPRRVP	10	Unmodified	_EERDPPRRVP_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A;EIF3A|p.P1332S|1|0.16|ENSG00000107581|chr10:119036194-119036194|G/A|missense_variant	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	A375_MHC_IP_R1	1	418.270751953125	3	417.558187	1249.65273	0.34506	0.00014408	4.3551	0.0018185	4.7002	0.0019626	417.8933605138864	20.798	0.56167	20.798	20.334	20.895	0					19	10	3	0	0	0	0.69306	1	5311	5311		8.4443	0.96724	1	1667000			9900	2743	6958	7020	9684	9684					0.03789221026499945
EEREFRKQF	9	Unmodified	_EEREFRKQF_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	A375_MHC_IP_R2	2	422.93499755859375	3	423.550921	1267.63093	-0.44017	-0.00018643	-0.055246	-2.3399E-05	-0.49542	-0.00020983	423.5509876831021	19.576	0.45602	20.187	19.993	20.449	0.61029					10	8	2	0	0	0	0.76452	1	6067	6067		4.897	0	1	787310			9901	3055	6959	7021	9685	9685					0.007824162779343169
EERELEKLF	9	Unmodified	_EERELEKLF_					0	0	0		ENST00000519287.1_1_5:159849240-159855685:+|nuORF;nc|ENSG00000213005|Q9NZH4|PTTG3P;ENSG00000164611|ENST00000352433|PTTG1;chr5:160422155-160422302|467|16.3|0.56|4.86|+|ENST00000520452|PTTG1,PTTG1	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	597.2149658203125	2	596.814053	1191.61355	-0.42755	-0.00025517	3.0217	0.0018034	2.5942	0.0015482	596.8142895648978	60.84	0.61122	60.84	60.514	61.126	0					34	11	4	0	0	0	0.13845	1	21906	21906		43.772	10.987	1	3165300			9902	484	6960	7022	9686	9686					0.025410759522856097
EERELEKLF	9	Unmodified	_EERELEKLF_					0	0	0		ENST00000519287.1_1_5:159849240-159855685:+|nuORF;nc|ENSG00000213005|Q9NZH4|PTTG3P;ENSG00000164611|ENST00000352433|PTTG1;chr5:160422155-160422302|467|16.3|0.56|4.86|+|ENST00000520452|PTTG1,PTTG1	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	398.61181640625	3	398.211794	1191.61355	-0.19849	-7.9039E-05	0.95888	0.00038184	0.7604	0.0003028	398.2117937977376	60.864	0.71199	60.864	60.464	61.176	0					28	13	3	0	0	0	0.14922	1	21957	21957		32.037	9.0218	1	2936600			9903	484	6960	7022	9687	9687					0.025410759522856097
EERELEKLF	9	Unmodified	_EERELEKLF_					0	0	0		ENST00000519287.1_1_5:159849240-159855685:+|nuORF;nc|ENSG00000213005|Q9NZH4|PTTG3P;ENSG00000164611|ENST00000352433|PTTG1;chr5:160422155-160422302|467|16.3|0.56|4.86|+|ENST00000520452|PTTG1,PTTG1	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	398.211794	1191.61355	-0.42601	-0.00016964	0.16226	6.4616E-05	-0.26374	-0.00010503	398.211752432457	60.051	0.71013	60.798	60.349	61.059	0.74714	-0.03311	-0.00011559	NaN	32.037	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2310700			9904	484	6960	7022							0.025410759522856097
EEREQRRRERE	11	Unmodified	_EEREQRRRERE_					0	0	0			REV__ENSG00000134775|ENST00000590592|FHOD3	REV__ENSG00000134775|ENST00000590592|FHOD3	MSMS	A375_MHC_IP_R2	2	787.0037231445312	2	786.901108	1571.78766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.63	1	123.96	123.46	124.46	0.33093								0	0	0	0.16337	1	47597	47597		1.1933	0	1		+		9905	18799	6961	7023	9688	9688					0.02464049430295745
EERGFDKAY	9	Unmodified	_EERGFDKAY_					0	0	0		ENSG00000175334|ENST00000312175|BANF1	ENSG00000175334|ENST00000312175|BANF1	ENSG00000175334|ENST00000312175|BANF1	MULTI-MSMS	A375_MHC_IP_R1	1	558.161376953125	2	557.76182	1113.50909	-0.76777	-0.00042824	0.012683	7.0738E-06	-0.75509	-0.00042116	557.7617883381496	23.917	0.76041	23.917	23.737	24.498	0					37	14	5	0	0	0	0.0089117	1	6671	6671		97.741	55.901	1	58989000			9906	7952	6962	7024	9689	9689					-0.043126258044367205
EERGFDKAY	9	Unmodified	_EERGFDKAY_					0	0	0		ENSG00000175334|ENST00000312175|BANF1	ENSG00000175334|ENST00000312175|BANF1	ENSG00000175334|ENST00000312175|BANF1	MULTI-SECPEP	A375_MHC_IP_R1	1	372.57696533203125	3	372.176972	1113.50909	0.090161	3.3556E-05	-0.11293	-4.2032E-05	-0.022773	-8.4757E-06	372.1769291619194	23.916	1.1139	23.916	23.533	24.647	0					57	21	5	0	0	0	0.38134	1	6667	6667		39.213	16.555	1	111770000			9907	7952	6962	7024	9690	9690					-0.043126258044367205
EERGFDKAY	9	Unmodified	_EERGFDKAY_					0	0	0		ENSG00000175334|ENST00000312175|BANF1	ENSG00000175334|ENST00000312175|BANF1	ENSG00000175334|ENST00000312175|BANF1	MULTI-MSMS	A375_MHC_IP_R2	2	558.1612548828125	2	557.76182	1113.50909	-1.057	-0.00058954	0.087835	4.8991E-05	-0.96913	-0.00054055	557.7618466567652	23.274	0.35328	23.904	23.726	24.079	0.63014					16	6	4	0	0	0	0.013192	1	7463	7463		92.201	50.361	1	31380000			9908	7952	6962	7024	9691	9691					-0.043126258044367205
EERGGTPAFL	10	Unmodified	_EERGGTPAFL_					0	0	0		PDLIM2|p.P262S|1|0.62|ENSG00000120913|chr8:22591571-22591571|C/T|missense_variant;ENSG00000120913|ENST00000409417|PDLIM2;nc|ENSG00000120913|Q96JY6-3|PDLIM2;nc|ENSG00000120913|Q96JY6-5|PDLIM2	PDLIM2|p.P262S|1|0.62|ENSG00000120913|chr8:22591571-22591571|C/T|missense_variant	PDLIM2|p.P262S|1|0.62|ENSG00000120913|chr8:22591571-22591571|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	539.1898193359375	2	538.772188	1075.52982	-0.82846	-0.00044635	-1.7972	-0.00096827	-2.6256	-0.0014146	538.771327292169	67.563	0.40752	68.3	68.104	68.511	0.73631					12	7	2	0	0	0	0.66308	1	25635	25635		16.149	0.30192	1	4087800			9909	3698	6963	7025	9692	9692					-0.004920354247587966
EERGRIYGYRF	11	Unmodified	_EERGRIYGYRF_					0	0	0		tr|U7STK0|U7STK0_FUSNUUrocanatehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutUPE=3SV=1	tr|U7STK0|U7STK0_FUSNUUrocanatehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutUPE=3SV=1	tr|U7STK0|U7STK0_FUSNUUrocanatehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutUPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	482.9801330566406	3	482.580992	1444.72115	-0.82947	-0.00040029	-0.39984	-0.00019295	-1.2293	-0.00059324	482.58069539526775	37.642	0.46099	38.416	38.175	38.636	0.77451					21	8	3	0	0	0	0.72851	1	13815	13815		10.315	1.0715	1	4502700			9910	29701	6964	7026	9693	9693					0.016574656063539805
EERHLLLTLAG	11	Unmodified	_EERHLLLTLAG_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	A375_MHC_IP_R1	1	417.9468078613281	3	417.906705	1250.69829	0.24767	0.0001035	0.58172	0.00024311	0.82939	0.00034661	417.90702334759976	28.497	0.40586	28.497	28.288	28.694	0					17	7	3	0	0	0	0.72649	1	8790	8790		6.6235	1.1002	1	5449900			9911	2486	6965	7027	9694	9694					0.0829644648890735
EERIKQFF	8	Unmodified	_EERIKQFF_					0	0	0			REV__ENST00000378026.4_3_12:106631868-106632117:-|nuORF	REV__ENST00000378026.4_3_12:106631868-106632117:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	549.1174926757812	2	548.792924	1095.57129	-0.65253	-0.00035811	-2.356	-0.001293	-3.0085	-0.0016511	548.791948738768	65.316	0.46016	65.316	65.206	65.666	0					14	8	2	0	0	0	0.96296	1	23707	23707		15.768	0	1	932140	+		9912	24171	6966	7028	9695	9695					0.027331453345595946
EERKAGKKHW	10	Unmodified	_EERKAGKKHW_					0	0	0			REV__ENST00000503192.5_1_5:90675815-90675908:-|nuORF	REV__ENST00000503192.5_1_5:90675815-90675908:-|nuORF	MSMS	A375_MHC_IP_R2	2	423.6307373046875	3	423.566794	1267.67855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.69	1	39.464	38.964	39.964	0.77451								0	0	0	0.15365	1	14258	14258		8.9762	0.53194	1		+		9913	25513	6967	7029	9696	9696					0.055421152687813446
EERKIDEW	8	Unmodified	_EERKIDEW_					0	0	0			REV__ENST00000505764.5_1_4:156680217-156693886:+|nuORF	REV__ENST00000505764.5_1_4:156680217-156693886:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	553.1693115234375	2	552.769645	1103.52474	-0.56565	-0.00031268	-0.59792	-0.00033051	-1.1636	-0.00064319	552.7696894688836	81.333	0.60715	81.333	81.1	81.707	0					27	11	3	0	0	0	0.57209	1	29758	29758		46.021	0.32134	1	4191700	+		9914	25540	6968	7030	9697	9697					-0.022883392873836783
EERKIDEW	8	Unmodified	_EERKIDEW_					0	0	0			REV__ENST00000505764.5_1_4:156680217-156693886:+|nuORF	REV__ENST00000505764.5_1_4:156680217-156693886:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	552.769645	1103.52474	-0.56565	-0.00031268	-0.59792	-0.00033051	-1.1636	-0.00064319	552.7696894688836	81.333	0.60715	81.333	81.1	81.707	0	-0.041923	2.5733E-05	NaN	46.021	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4191700	+		9915	25540	6968	7030							-0.022883392873836783
EERKIDEW	8	Unmodified	_EERKIDEW_					0	0	0			REV__ENST00000505764.5_1_4:156680217-156693886:+|nuORF	REV__ENST00000505764.5_1_4:156680217-156693886:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	552.769645	1103.52474	-0.83876	-0.00046364	-0.64988	-0.00035923	-1.4886	-0.00082288	552.7695132672791	80.672	0.56165	81.417	81.163	81.724	0.74474	0.041923	-3.1711E-05	NaN	46.021	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4274800	+		9916	25540	6968	7030							-0.022883392873836783
EERKQIFEQ	9	Unmodified	_EERKQIFEQ_					0	0	0		ENSG00000176769|ENST00000368642|TCERG1L;ENST00000483040.1_1_10:132891427-132954311:-|nuORF	ENSG00000176769|ENST00000368642|TCERG1L	ENSG00000176769|ENST00000368642|TCERG1L	MULTI-MSMS	A375_MHC_IP_R1	1	604.2088012695312	2	603.809302	1205.60405	-0.38223	-0.0002308	-0.32987	-0.00019918	-0.7121	-0.00042997	603.8091518586178	24.846	0.50632	24.846	24.698	25.204	0					13	9	2	0	0	0	0.46465	1	7168	7168		21.537	6.6987	1	6145700			9917	8032	6969	7031	9698	9698					0.009473076667518399
EERLFLHGRWD	11	Unmodified	_EERLFLHGRWD_					0	0	0			REV__ENST00000527603.5_1_11:44094972-44097147:+|nuORF	REV__ENST00000527603.5_1_11:44094972-44097147:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	486.66705322265625	3	486.580992	1456.72115	-0.75359	-0.00036668	0.34659	0.00016864	-0.40701	-0.00019804	486.5811093332623	40.711	0.40701	41.485	41.234	41.641	0.77451					17	7	3	0	0	0	0.99548	1	15091	15091		8.7518	7.642	1	3278800	+		9918	17630	6970	7032	9699	9699					0.011054656063834045
EERLGVHPLS	10	Unmodified	_EERLGVHPLS_					0	0	0		ENST00000509421.1_1_4:4896340-4896505:-|nuORF	ENST00000509421.1_1_4:4896340-4896505:-|nuORF	ENST00000509421.1_1_4:4896340-4896505:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	568.674560546875	2	568.806562	1135.59857	-0.211	-0.00012002	-3.5965	-0.0020457	-3.8075	-0.0021657	569.3045236219476	37.309	0.30596	37.309	37.045	37.351	0					7	5	2	0	0	0	0.88918	1	12561	12561		13.042	1.4022	1	927080			9919	12890	6971	7033	9700	9700					0.03619628874957925
EERLMSNEK	9	Unmodified	_EERLMSNEK_					0	0	0			REV__nc|ENSG00000082805|Q8IUD2-4|ERC1	REV__nc|ENSG00000082805|Q8IUD2-4|ERC1	MULTI-SECPEP	A375_MHC_IP_R2	2	379.27685546875	3	379.185251	1134.53392	-0.051378	-1.9482E-05	-0.84252	-0.00031947	-0.89389	-0.00033895	379.5187804843824	39.246	1.3761	40.02	39.351	40.727	0.77451					33	26	2	0	0	0	0.74412	1	14631	14631		6.6304	0	1	2490700	+		9920	16794	6972	7034	9701	9701					-0.02796313993349031
EERLPVKGRP	10	Unmodified	_EERLPVKGRP_					0	0	0			REV__ENSG00000205143|ENST00000378909|ARID3C	REV__ENSG00000205143|ENST00000378909|ARID3C	MSMS	A375_MHC_IP_R2	2	590.6785888671875	2	590.843479	1179.67241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.505	1	92.239	91.739	92.739	0.7345								0	0	0	0.15539	1	34806	34806		6.2058	1.4498	1		+		9921	22560	6973	7035	9702	9702					0.08975597037283478
EERLSFYE	8	Unmodified	_EERLSFYE_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000462630.5_1_20:2637388-2638937:+|nuORF;ENST00000492135.5_1_20:2636822-2638937:+|nuORF;ENST00000490753.1_1_20:2637050-2637903:+|nuORF;ENST00000466447.5_1_20:2636822-2638033:+|nuORF;ENST00000471023.1_1_20:2637149-2637577:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1611328125	2	536.750921	1071.48729	-0.9087	-0.00048774	0.61307	0.00032907	-0.29562	-0.00015868	536.751304320567	31.031	0.70936	31.749	31.367	32.077	0.71857					26	13	3	0	0	0	0.81376	1	11003	11003		39.957	13.074	1	4003900			9922	2285	6974	7036	9703	9703					-0.045594305529675694
EERLTVVKDF	10	Unmodified	_EERLTVVKDF_					0	0	0			REV__ENSG00000166813|ENST00000394412|KIF7	REV__ENSG00000166813|ENST00000394412|KIF7	MULTI-MSMS	A375_MHC_IP_R1	1	412.95916748046875	3	412.559194	1234.65575	-0.13065	-5.39E-05	0.15132	6.2427E-05	0.020668	8.527E-06	412.55916691428087	26.399	0.45524	26.399	26.221	26.677	0					14	8	2	0	0	0	0.64017	1	7876	7876		17.863	2.906	1	9770800	+		9923	20702	6975	7037	9704	9704					0.04781051360669153
EERLTVVKDF	10	Unmodified	_EERLTVVKDF_					0	0	0			REV__ENSG00000166813|ENST00000394412|KIF7	REV__ENSG00000166813|ENST00000394412|KIF7	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	412.559194	1234.65575	-0.13065	-5.39E-05	0.15132	6.2427E-05	0.020668	8.527E-06	412.55916691428087	26.399	0.45524	26.399	26.221	26.677	0	-0.015422	-0.00035151	NaN	17.863	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9770800	+		9924	20702	6975	7037							0.04781051360669153
EERLTWHSY	9	Unmodified	_EERLTWHSY_					0	0	0		ENSG00000108468|ENST00000225603|CBX1	ENSG00000108468|ENST00000225603|CBX1	ENSG00000108468|ENST00000225603|CBX1	MULTI-MSMS	A375_MHC_IP_R1	1	407.9280090332031	3	407.528005	1219.56219	-0.53975	-0.00021996	0.85721	0.00034934	0.31746	0.00012937	407.5282404892465	41.596	0.35749	41.596	41.419	41.777	0					16	6	3	0	0	0	0.36834	1	14403	14403		26.268	18.323	1	4262200			9925	2803	6976	7038	9705	9705					-0.03881248021752981
EERLTWHSY	9	Unmodified	_EERLTWHSY_					0	0	0		ENSG00000108468|ENST00000225603|CBX1	ENSG00000108468|ENST00000225603|CBX1	ENSG00000108468|ENST00000225603|CBX1	MULTI-MSMS	A375_MHC_IP_R2	2	407.92779541015625	3	407.528005	1219.56219	-0.20341	-8.2897E-05	-0.22198	-9.0464E-05	-0.4254	-0.00017336	407.5279330054131	40.883	0.40691	41.658	41.438	41.845	0.77451					17	7	3	0	0	0	0.26169	1	15174	15174		33.445	21.27	1	2896800			9926	2803	6976	7038	9706	9706					-0.03881248021752981
EERLYNFE	8	Unmodified	_EERLYNFE_					0	0	0			REV__tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1	REV__tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	550.2548828125	2	550.256371	1098.49819	-0.96667	-0.00053192	0.63625	0.0003501	-0.33042	-0.00018182	550.256075702127	65.722	0.4053	66.461	66.172	66.577	0.73812					14	7	3	0	0	0	0.76248	1	24866	24866		16.942	1.0951	1	1082000	+		9927	28350	6977	7039	9707	9707					-0.0471202817871017
EERMKKVT	8	Unmodified	_EERMKKVT_					0	0	0			REV__ENSG00000183570|ENST00000681687|PCBP3	REV__ENSG00000183570|ENST00000681687|PCBP3	MULTI-SECPEP	A375_MHC_IP_R1	1	510.99884033203125	2	510.778959	1019.54336	-0.47808	-0.00024419	-2.0031	-0.0010232	-2.4812	-0.0012673	510.77846472640636	34.151	0.86021	34.151	33.848	34.708	0					19	10	4	0	0	0	0.95423	1	11294	11294		12.532	3.1841	1	2924900	+		9928	21763	6978	7040	9708	9708					0.03437499082826889
EERNYIYRELF	11	Unmodified	_EERNYIYRELF_					0	0	0			REV__ENST00000469120.1_1_6:33043797-33048717:+|nuORF	REV__ENST00000469120.1_1_6:33043797-33048717:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	511.1546630859375	3	511.256174	1530.74669	-0.54999	-0.00028119	-0.67735	-0.0003463	-1.2273	-0.00062749	511.25645792878555	27.415	0.70801	27.415	27.179	27.887	0					18	13	2	0	0	0	0.99482	1	8344	8344		9.2438	2.6203	1	2003300	+		9929	22706	6979	7041	9709	9709					0.0025489533813924936
EERPRRCRDEL	11	Unmodified	_EERPRRCRDEL_					0	0	0		nc|ENSG00000061337|Q9Y250-5|LZTS1;nc|ENSG00000061337|Q9Y250-4|LZTS1;nc|ENSG00000061337|Q9Y250-3|LZTS1;nc|ENSG00000061337|Q9Y250-2|LZTS1;ENSG00000061337|ENST00000381569|LZTS1	nc|ENSG00000061337|Q9Y250-5|LZTS1	nc|ENSG00000061337|Q9Y250-5|LZTS1	MULTI-SECPEP	A375_MHC_IP_R2	2	487.3119812011719	3	486.912524	1457.71574	-0.48546	-0.00023638	-0.61431	-0.00029911	-1.0998	-0.00053549	486.9122126628449	87.178	0.35464	87.911	87.712	88.067	0.733					11	6	2	0	0	0	0.99994	1	33169	33169		1.9275	1.9275	1	2155700			9930	1319	6980	7042	9710	9710					0.0051941875224201794
EERPYECSECG	11	Unmodified	_EERPYECSECG_					0	0	0		nc|ENSG00000186272|P17021-3|ZNF17;ENST00000602050.1_1_19:57930944-57932846:+|nuORF;nc|ENSG00000186272|P17021|ZNF17;ENSG00000186272|ENST00000307658|ZNF17;ZNF671|p.G337E|1|0.29|ENSG00000083814|chr19:57721076-57721076|C/T|missense_variant	nc|ENSG00000186272|P17021-3|ZNF17	nc|ENSG00000186272|P17021-3|ZNF17	MULTI-SECPEP	A375_MHC_IP_R1	1	434.8971252441406	3	434.497277	1300.47	-0.22632	-9.8336E-05	-0.38809	-0.00016862	-0.61441	-0.00026696	434.4972950841985	31.33	0.60759	31.33	31.009	31.616	0					41	11	5	0	0	0	0.99507	1	9984	9984		2.084	0	1	27474000			9931	8737	6981	7043	9711	9711					-0.16821462212624283
EERPYSSRL	9	Unmodified	_EERPYSSRL_					0	0	0		ENSG00000116863|ENST00000373178|ADPRS	ENSG00000116863|ENST00000373178|ADPRS	ENSG00000116863|ENST00000373178|ADPRS	MULTI-MSMS	A375_MHC_IP_R2	2	380.1241455078125	3	379.528005	1135.56219	-0.37317	-0.00014163	-0.17306	-6.568E-05	-0.54623	-0.00020731	379.52787808557156	25.198	0.5101	25.842	25.568	26.078	0.64368					29	9	4	0	0	0	0.55471	1	8476	8476		21.59	6.3417	1	14446000			9932	3440	6982	7044	9712	9712					-0.00017248021754312504
EERQFESKEL	10	Unmodified	_EERQFESKEL_					0	0	0			REV__ENSG00000144821|ENST00000693548|MYH15	REV__ENSG00000144821|ENST00000693548|MYH15	MULTI-SECPEP	A375_MHC_IP_R1	1	647.1673583984375	2	647.817324	1293.62009	-0.36914	-0.00023913	0.50335	0.00032608	0.13422	8.6949E-05	647.8177919311956	33.332	0.35645	33.332	33.14	33.496	0					9	6	2	0	0	0	0.93566	1	10862	10862		7.1017	1.3699	1	1950100	+		9933	19448	6983	7045	9713	9713					-0.014970308870033477
EERQRIIT	8	Unmodified	_EERQRIIT_					0	0	0		ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	MULTI-SECPEP	A375_MHC_IP_R2	2	522.205322265625	2	522.793455	1043.57236	-0.86035	-0.00044979	-3.3776	-0.0017658	-4.2379	-0.0022156	523.2937500679061	60.715	0.40638	61.46	61.109	61.515	0.74503					11	7	2	0	0	0	0.95423	1	22934	22934		12.532	0	1	668390			9934	9301	6984	7046	9714	9714					0.05231359703475391
EERRQQQL	8	Unmodified	_EERRQQQL_					0	0	0		ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	MSMS	A375_MHC_IP_R1	1	543.7498779296875	2	543.786161	1085.55777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.191	1	43.191	42.691	43.691	0								0	0	0	0.16876	1	15003	15003		26.341	0.94196	1				9935	6372	6985	7047	9715	9715					0.018412875553167396
EERRRLGIWFD	11	Unmodified	_EERRRLGIWFD_					0	0	0			REV__ENSG00000204381|ENST00000375614|LAYN	REV__ENSG00000204381|ENST00000375614|LAYN	MULTI-SECPEP	A375_MHC_IP_R1	1	493.33685302734375	3	492.928392	1475.76335	-0.42166	-0.00020785	-1.6291	-0.00080303	-2.0508	-0.0010109	493.2627234460785	19.683	0.4079	19.683	19.521	19.928	0					10	7	2	0	0	0	0.99994	1	4944	4944		3.5927	0	1	1532400	+		9936	22510	6986	7048	9716	9716					0.04449441014730837
EERRRRELEKK	11	Unmodified	_EERRRRELEKK_					0	0	0		ENSG00000169062|ENST00000375299|UPF3A;ENST00000457924.2_1_17:20279644-20279995:-|nuORF;ENST00000480362.5_1_13:115047204-115067220:+|nuORF;nc|ENSG00000169062|Q9H1J1-2|UPF3A	ENSG00000169062|ENST00000375299|UPF3A	ENSG00000169062|ENST00000375299|UPF3A	MSMS	A375_MHC_IP_R2	2	764.834228515625	2	764.936962	1527.85937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.89	1	139.95	139.45	140.45	0.059906								0	0	0	0.16312	1	54787	54787		2.4985	1.3051	1				9937	7376	6987	7049	9717	9717					0.11655588854819143
EERSHHHY	8	Unmodified	_EERSHHHY_					0	0	0		ILDR1|p.G367E|3|0.46|ENSG00000145103|chr3:121993649-121993649|C/T|missense_variant	ILDR1|p.G367E|3|0.46|ENSG00000145103|chr3:121993649-121993649|C/T|missense_variant	ILDR1|p.G367E|3|0.46|ENSG00000145103|chr3:121993649-121993649|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	547.6921997070312	2	547.741754	1093.46895	-0.44253	-0.00024239	-0.86552	-0.00047408	-1.3081	-0.00071648	547.7407761870992	93.36	0.51013	93.36	93.176	93.686	0					11	9	2	0	0	0	0.77488	1	34359	34359		13.508	0.97634	1	484370			9938	14161	6988	7050	9718	9718					-0.07404127684321793
EERTFHIFY	9	Unmodified	_EERTFHIFY_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	A375_MHC_IP_R1	1	414.9365234375	3	414.536501	1240.58767	0.47747	0.00019793	-0.45359	-0.00018803	0.023879	9.8989E-06	414.53623520868376	70.404	0.46059	70.404	70.085	70.545	0					18	8	3	0	0	0	0.41879	1	25535	25535		23.79	6.3471	1	3334500			9939	2162	6989	7051	9719	9719					-0.02299773499339608
EERTFHIFY	9	Unmodified	_EERTFHIFY_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	A375_MHC_IP_R2	2	414.93634033203125	3	414.536501	1240.58767	0.086956	3.6047E-05	0.17508	7.2575E-05	0.26203	0.00010862	414.5362993798085	69.593	0.50887	70.327	70.031	70.54	0.73421					22	9	3	0	0	0	0.41879	1	26372	26372		23.79	6.3471	1	2765100			9940	2162	6989	7051	9720	9720					-0.02299773499339608
EERVINEEY	9	Unmodified	_EERVINEEY_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000401893.7_1_1:33116898-33134028:+|nuORF	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-SECPEP	A375_MHC_IP_R1	1	591.1775512695312	2	590.777667	1179.54078	-0.11818	-6.9816E-05	-0.26252	-0.00015509	-0.38069	-0.00022491	590.7773939163384	35.63	0.46041	35.63	35.369	35.83	0					25	8	4	0	0	0	0.016541	1	11854	11854		87.258	39.51	1	8995600			9941	6544	6990	7052	9721	9721					-0.041806778411455525
EERVINEEY	9	Unmodified	_EERVINEEY_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000401893.7_1_1:33116898-33134028:+|nuORF	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-SECPEP	A375_MHC_IP_R2	2	591.17724609375	2	590.777667	1179.54078	-0.77981	-0.0004607	0.1712	0.00010114	-0.60861	-0.00035955	590.7778007523029	34.946	0.45385	35.709	35.475	35.929	0.76338					21	8	3	0	0	0	0.022401	1	12626	12626		110.67	62.926	1	8682000			9942	6544	6990	7052	9722	9722					-0.041806778411455525
EERVPRKRRQ	10	Unmodified	_EERVPRKRRQ_					0	0	0		PHF14|p.E850K|1|0.46|ENSG00000106443|chr7:11061979-11061979|G/A|missense_variant	PHF14|p.E850K|1|0.46|ENSG00000106443|chr7:11061979-11061979|G/A|missense_variant	PHF14|p.E850K|1|0.46|ENSG00000106443|chr7:11061979-11061979|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	677.794921875	2	677.394733	1352.77491	-0.4789	-0.0003244	0.76401	0.00051753	0.28511	0.00019313	677.395131941449	141.74	2.7573	141.77	140.13	142.89	0.030731					87	53	2	0	0	0	0.72392	1	55676	55676		3.2813	1.7994	1	1801200			9943	15166	6991	7053	9723	9723					0.11263682828735
EERVPRKRRQ	10	Unmodified	_EERVPRKRRQ_					0	0	0		PHF14|p.E850K|1|0.46|ENSG00000106443|chr7:11061979-11061979|G/A|missense_variant	PHF14|p.E850K|1|0.46|ENSG00000106443|chr7:11061979-11061979|G/A|missense_variant	PHF14|p.E850K|1|0.46|ENSG00000106443|chr7:11061979-11061979|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	677.394733	1352.77491	-0.4789	-0.0003244	0.76401	0.00051753	0.28511	0.00019313	677.395131941449	141.74	2.7573	141.77	140.13	142.89	0.030731	0.021301	-2.1624E-05	NaN	3.2813	87	53	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1801200			9944	15166	6991	7053							0.11263682828735
EERVRSFEEL	10	Unmodified	_EERVRSFEEL_					0	0	0			REV__ENSG00000173473|ENST00000254480|SMARCC1	REV__ENSG00000173473|ENST00000254480|SMARCC1	MSMS	A375_MHC_IP_R2	2	647.35595703125	2	647.325316	1292.63608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.016	1	65.754	65.254	66.254	0.73811								0	0	0	0.15353	1	24651	24651		9.3831	0	1		+		9945	21224	6992	7054	9724	9724					0.0014667534992440778
EERVYTPSNAD	11	Unmodified	_EERVYTPSNAD_					0	0	0		nc|ENSG00000174840|Q6L8Q7-2|PDE12;ENSG00000174840|ENST00000311180|PDE12	nc|ENSG00000174840|Q6L8Q7-2|PDE12	nc|ENSG00000174840|Q6L8Q7-2|PDE12	MULTI-SECPEP	A375_MHC_IP_R1	1	427.28228759765625	3	427.529963	1279.56806	0.26598	0.00011372	1.2505	0.00053462	1.5165	0.00064834	427.53034441772553	22.68	0.45516	22.68	22.368	22.823	0					11	8	2	0	0	0	0.90673	1	6149	6149		14.838	1.982	1	1051200			9946	7907	6993	7055	9725	9725					-0.06054194300736526
EERWPEDGQ	9	Unmodified	_EERWPEDGQ_					0	0	0			REV__ENSG00000175787|ENST00000395395|ZNF169	REV__ENSG00000175787|ENST00000395395|ZNF169	MULTI-MSMS	A375_MHC_IP_R1	1	574.1486206054688	2	573.246535	1144.47852	-0.13375	-7.6672E-05	0.33497	0.00019202	0.20122	0.00011535	573.2469642208807	35.153	0.45777	35.153	34.963	35.421	0					18	8	3	0	0	0	0.55818	1	11669	11669		16.942	6.1184	1	4760800	+		9947	21367	6994	7056	9726	9726					-0.08794404189461602
EESAARVVL	9	Unmodified	_EESAARVVL_					0	0	0		ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	MULTI-SECPEP	A375_MHC_IP_R1	1	487.1424865722656	2	487.269281	972.52401	-0.19016	-9.2659E-05	1.7029	0.00082976	1.5127	0.0007371	487.2696212163966	43.646	0.60903	43.646	43.3	43.909	0					20	11	3	0	0	0	0.53748	1	15121	15121		24.021	3.5669	1	1677000			9948	4968	6995	7057	9727	9727					0.03664866063570571
EESAARVVL	9	Unmodified	_EESAARVVL_					0	0	0		ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	MULTI-SECPEP	A375_MHC_IP_R2	2	487.6684875488281	2	487.269281	972.52401	-0.52203	-0.00025437	0.074273	3.6191E-05	-0.44776	-0.00021818	487.26926969405173	42.623	0.35531	43.395	43.218	43.573	0.7724					9	6	2	0	0	0	0.50702	1	15888	15888		32.305	9.1571	1	1749200			9949	4968	6995	7057	9728	9728					0.03664866063570571
EESAIRVGF	9	Unmodified	_EESAIRVGF_					0	0	0		ENSG00000176986|ENST00000345254|SEC24C	ENSG00000176986|ENST00000345254|SEC24C	ENSG00000176986|ENST00000345254|SEC24C	MULTI-SECPEP	A375_MHC_IP_R1	1	504.6612243652344	2	504.261456	1006.50836	-0.2748	-0.00013857	-0.5897	-0.00029736	-0.86449	-0.00043593	504.26144377039793	62.325	0.61419	62.325	62.097	62.711	0					24	11	3	0	0	0	0.46045	1	22535	22535		36.127	21.545	1	2909000			9950	8050	6996	7058	9729	9729					0.00536579546530902
EESAIRVGF	9	Unmodified	_EESAIRVGF_					0	0	0		ENSG00000176986|ENST00000345254|SEC24C	ENSG00000176986|ENST00000345254|SEC24C	ENSG00000176986|ENST00000345254|SEC24C	MULTI-SECPEP	A375_MHC_IP_R2	2	504.6612243652344	2	504.261456	1006.50836	-0.99944	-0.00050398	-0.61156	-0.00030839	-1.611	-0.00081237	504.26144293833244	61.552	0.50292	62.297	62.02	62.523	0.74503					16	9	2	0	0	0	0.53748	1	23326	23326		30.637	26.692	1	3667500			9951	8050	6996	7058	9730	9730					0.00536579546530902
EESASFFYTY	10	Unmodified	_EESASFFYTY_					0	0	0			REV__ENST00000569053.5_1_18:66357168-66367709:-|nuORF	REV__ENST00000569053.5_1_18:66357168-66367709:-|nuORF	MSMS	A375_MHC_IP_R1	1	622.2012939453125	2	622.261319	1242.50808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.939	1	55.939	55.439	56.439	0								0	0	0	0.14601	1	20024	20024		25.399	3.8623	1		+		9952	20681	6997	7059	9731	9731					-0.10346884963973935
EESASFFYTY	10	Unmodified	_EESASFFYTY_					0	0	0			REV__ENST00000569053.5_1_18:66357168-66367709:-|nuORF	REV__ENST00000569053.5_1_18:66357168-66367709:-|nuORF	MSMS	A375_MHC_IP_R2	2	622.2005615234375	2	622.261319	1242.50808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.24	1	55.991	55.491	56.491	0.75075								0	0	0	0.119	1	20864	20864		39.957	18.42	1		+		9953	20681	6997	7059	9732	9732					-0.10346884963973935
EESAVPKRSW	10	Unmodified	_EESAVPKRSW_					0	0	0		ENST00000466860.5_1_1:12082310-12089454:+|nuORF;nc|ENSG00000116691|Q5JXC2-2|MIIP;ENSG00000116691|ENST00000235332|MIIP	ENST00000466860.5_1_1:12082310-12089454:+|nuORF	ENST00000466860.5_1_1:12082310-12089454:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	396.64715576171875	3	396.871772	1187.59349	-0.53841	-0.00021368	0.53297	0.00021152	-0.0054444	-2.1607E-06	397.2063988495056	25.204	0.3576	25.848	25.619	25.976	0.64368					9	6	2	0	0	0	0.92199	1	8374	8374		14.957	6.8016	1	1618900			9954	3420	6998	7060	9733	9733					0.007193250123464168
EESCNNCE	8	Unmodified	_EESCNNCE_					0	0	0			REV__ENSG00000149575|ENST00000278947|SCN2B	REV__ENSG00000149575|ENST00000278947|SCN2B	MSMS	A375_MHC_IP_R2	2	464.1502685546875	2	464.144575	926.274596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.463	1	31.182	30.682	31.682	0.71857								0	0	0	0.16876	1	10709	10709		5.7604	0	1		+		9955	19690	6999	7061	9734	9734					-0.1914900794680534
EESDFSLNRIF	11	Unmodified	_EESDFSLNRIF_					0	0	0			REV__nc|ENSG00000106344|Q9NW13-2|RBM28	REV__nc|ENSG00000106344|Q9NW13-2|RBM28	MULTI-SECPEP	A375_MHC_IP_R2	2	453.3212585449219	3	452.885858	1355.63574	-0.042992	-1.9471E-05	0.0655	2.9664E-05	0.022508	1.0194E-05	452.8856501256113	43.786	0.45325	44.555	44.329	44.782	0.7691					21	8	3	0	0	0	0.99732	1	16375	16375		4.1166	4.1166	1	5673500	+		9956	17442	7000	7062	9735	9735					-0.027847443699556607
EESDGLPAF	9	Unmodified	_EESDGLPAF_					0	0	0		nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5;nc|ENSG00000134532|P35711-4|SOX5	nc|ENSG00000134532|P35711-2|SOX5	nc|ENSG00000134532|P35711-2|SOX5	MULTI-MSMS	A375_MHC_IP_R1	1	964.209228515625	1	964.425818	963.418542	-0.036923	-3.561E-05	0.25665	0.00024752	0.21972	0.00021191	964.4260148540602	90.177	0.7079	90.177	89.78	90.488	0					23	13	2	0	0	0	0.03063	1	33110	33110		74.423	40.32	1	3581900			9957	4585	7001	7063	9736	9736					-0.06463094852699669
EESDGLPAF	9	Unmodified	_EESDGLPAF_					0	0	0		nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5;nc|ENSG00000134532|P35711-4|SOX5	nc|ENSG00000134532|P35711-2|SOX5	nc|ENSG00000134532|P35711-2|SOX5	MULTI-MSMS	A375_MHC_IP_R2	2	964.3646850585938	1	964.425818	963.418542	-0.0023672	-2.283E-06	0.13032	0.00012568	0.12795	0.0001234	964.4257385995676	89.501	0.76193	90.232	89.886	90.648	0.7318					26	14	3	0	0	0	0.13491	1	34144	34144		44.407	21.259	1	3031800			9958	4585	7001	7063	9737	9737					-0.06463094852699669
EESDIYLEF	9	Unmodified	_EESDIYLEF_					0	0	0			REV__tr|U7STZ0|U7STZ0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01250PE=4SV=1	REV__tr|U7STZ0|U7STZ0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01250PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	572.1717529296875	2	572.755869	1143.49719	-0.23018	-0.00013184	-1.7686	-0.001013	-1.9988	-0.0011448	572.7545024224991	105.48	0.2528	106.24	106.07	106.32	0.76037					5	4	2	0	0	0	0.71541	1	39866	39866		11.64	0	1	586500	+		9959	28520	7002	7064	9738	9738					-0.06882287338294191
EESDLAQQY	9	Unmodified	_EESDLAQQY_					0	0	0		ENSG00000185624|ENST00000331483|P4HB;ENST00000576380.5_1_17:79813102-79817234:-|nuORF;ENST00000466567.2_1_17:79817024-79818356:-|nuORF	ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	MSMS	A375_MHC_IP_R2	2	541.6846313476562	2	541.735468	1081.45638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.494	1	43.266	42.766	43.766	0.7724								0	0	0	0.1535	1	15808	15808		15.847	2.3393	1				9960	8679	7003	7065	9739	9739					-0.08108628657896588
EESDLERGY	9	Unmodified	_EESDLERGY_					0	0	0		nc|ENSG00000064652|Q9Y343-2|SNX24;ENSG00000064652|ENST00000261369|SNX24	nc|ENSG00000064652|Q9Y343-2|SNX24	nc|ENSG00000064652|Q9Y343-2|SNX24	MULTI-MSMS	A375_MHC_IP_R1	1	549.263671875	2	549.240918	1096.46728	-0.98528	-0.00054115	1.0518	0.00057769	0.066511	3.6531E-05	549.2411264016299	29.445	0.30416	29.445	29.302	29.607	0					7	5	2	0	0	0	0.60982	1	9214	9214		14.405	6.2499	1	5868400			9961	1356	7004	7066	9740	9740					-0.07709226283623138
EESDLSRQY	9	Unmodified	_EESDLSRQY_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;GTF3C1|p.S767Vfs*7|1|0.47|ENSG00000077235|chr16:27497688-27497688|T/-|frameshift_variant	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	A375_MHC_IP_R1	1	564.153564453125	2	563.754192	1125.49383	-0.74629	-0.00042072	0.010691	6.0273E-06	-0.73559	-0.00041469	563.7541624177625	26.601	0.80585	26.601	26.373	27.179	0					43	15	4	0	0	0	5.5135E-18	1	7929	7929		249.11	141.92	1	68865000			9962	1649	7005	7067	9741	9741					-0.06389537392283273
EESDLSRQY	9	Unmodified	_EESDLSRQY_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;GTF3C1|p.S767Vfs*7|1|0.47|ENSG00000077235|chr16:27497688-27497688|T/-|frameshift_variant	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	A375_MHC_IP_R2	2	564.1544189453125	2	563.754192	1125.49383	-0.92901	-0.00052373	0.22953	0.0001294	-0.69948	-0.00039434	563.7543289285313	26.068	0.55821	26.728	26.551	27.109	0.65992					32	10	4	0	0	0	3.5381E-11	1	8763	8763		232.37	132.57	1	64721000			9963	1649	7005	7067	9742	9742					-0.06389537392283273
EESDRTESLAT	11	Unmodified	_EESDRTESLAT_					0	0	0			REV__CLTCL1|p.P985S|1|0.45|ENSG00000070371|chr22:19216223-19216223|G/A|missense_variant	REV__CLTCL1|p.P985S|1|0.45|ENSG00000070371|chr22:19216223-19216223|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	619.6806030273438	2	619.280771	1236.54699	-0.37365	-0.00023139	0.11887	7.3611E-05	-0.25478	-0.00015778	619.280731408801	43.742	0.71073	43.742	43.351	44.061	0					31	13	3	0	0	0	0.51633	1	15162	15162		29.841	0	1	20009000	+		9964	15804	7006	7068	9743	9743					-0.061822044002838084
EESDRTESLAT	11	Unmodified	_EESDRTESLAT_					0	0	0			REV__CLTCL1|p.P985S|1|0.45|ENSG00000070371|chr22:19216223-19216223|G/A|missense_variant	REV__CLTCL1|p.P985S|1|0.45|ENSG00000070371|chr22:19216223-19216223|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	619.280771	1236.54699	-0.37365	-0.00023139	0.11887	7.3611E-05	-0.25478	-0.00015778	619.280731408801	43.742	0.71073	43.742	43.351	44.061	0	-0.061699	0.00015493	NaN	29.841	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20009000	+		9965	15804	7006	7068							-0.061822044002838084
EESDSHNDMA	10	Unmodified	_EESDSHNDMA_					0	0	0			REV__nc|ENSG00000141699|Q86VR2-2|RETREG3	REV__nc|ENSG00000141699|Q86VR2-2|RETREG3	MULTI-MSMS	A375_MHC_IP_R1	1	568.1045532226562	2	567.703842	1133.39313	-0.44171	-0.00025076	0.90794	0.00051544	0.46623	0.00026468	567.7044468523072	47.128	1.0217	47.128	46.545	47.567	0					37	19	3	0	0	0	0.71118	3	16519	16519;16553;16608		7.2892	1.5288	1	3380900	+		9966	19285	7007	7069	9744;9745;9746	9744					-0.16822937437450491
EESDTIFIY	9	Unmodified	_EESDTIFIY_					0	0	0			REV__ENST00000427635.6_1_10:69747892-69752485:-|nuORF	REV__ENST00000427635.6_1_10:69747892-69752485:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	559.1695556640625	2	558.758412	1115.50227	-0.5041	-0.00028167	-0.50644	-0.00028298	-1.0105	-0.00056465	558.7578719279211	68.743	0.4052	68.743	68.514	68.92	0					9	7	2	0	0	0	0.76187	1	24889	24889		7.2892	0	1	705320	+		9967	24668	7008	7070	9747	9747					-0.050859834756465716
EESEAYKSL	9	Unmodified	_EESEAYKSL_					0	0	0		ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	MULTI-MSMS	A375_MHC_IP_R1	1	528.6480102539062	2	528.248212	1054.48187	-0.86173	-0.00045521	0.089777	4.7425E-05	-0.77195	-0.00040778	528.2483150056152	30.304	0.9086	30.304	29.949	30.857	0					37	17	3	0	0	0	0.04093	2	9624	9578;9624		67.838	24.866	1	20677000			9968	1067	7009	7071	9748;9749	9749					-0.04319154135487224
EESEAYKSL	9	Unmodified	_EESEAYKSL_					0	0	0		ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	MULTI-MSMS	A375_MHC_IP_R2	2	528.6477661132812	2	528.248212	1054.48187	-1.0185	-0.00053803	0.067984	3.5912E-05	-0.95053	-0.00050212	528.2482169384033	29.667	1.2139	30.365	29.88	31.094	0.69872					51	23	3	0	0	0	0.027818	1	10360	10360		76.825	26.892	1	19756000			9969	1067	7009	7071	9750	9750					-0.04319154135487224
EESEAYKSLF	10	Unmodified	_EESEAYKSLF_					0	0	0		ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	MULTI-SECPEP	A375_MHC_IP_R1	1	602.050048828125	2	601.782418	1201.55028	-0.7749	-0.00046632	0.0095778	5.7638E-06	-0.76532	-0.00046056	601.7824877088383	68.011	0.60567	68.011	67.654	68.26	0					22	11	3	0	0	0	0.4546	1	24611	24611		51.415	11.466	1	2099400			9970	1067	7010	7072	9751	9751					-0.042429095556371976
EESEAYKSLF	10	Unmodified	_EESEAYKSLF_					0	0	0		ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	MULTI-MSMS	A375_MHC_IP_R2	2	602.1819458007812	2	601.782418	1201.55028	-0.51104	-0.00030753	-0.60685	-0.00036519	-1.1179	-0.00067272	601.7820058720064	67.314	0.6091	68.05	67.546	68.155	0.73631					24	11	3	0	0	0	0.064809	1	25488	25488		71.708	23.959	1	2570400			9971	1067	7010	7072	9752	9752					-0.042429095556371976
EESEFLVDR	9	Unmodified	_EESEFLVDR_					0	0	0		ENSG00000174125|ENST00000308979|TLR1	ENSG00000174125|ENST00000308979|TLR1	ENSG00000174125|ENST00000308979|TLR1	MSMS	A375_MHC_IP_R2	2	562.1868286132812	2	562.266936	1122.51932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.596	1	26.256	25.756	26.756	0.65992								0	0	0	0.15283	1	8571	8571		16.942	2.104	1				9972	7856	7011	7073	9753	9753					-0.03704062869860536
EESEKHTTES	10	Unmodified	_EESEKHTTES_					0	0	0			REV__ENSG00000101639|ENST00000506447|CEP192	REV__ENSG00000101639|ENST00000506447|CEP192	MULTI-SECPEP	A375_MHC_IP_R1	1	588.1647338867188	2	588.754389	1175.49423	-0.29216	-0.00017201	0.21624	0.00012731	-0.075929	-4.4704E-05	589.2559867062956	59.439	0.45691	59.439	59.194	59.651	0					10	8	2	0	0	0	0.87163	1	21355	21355		19.257	5.3509	1	1105000	+		9973	17180	7012	7074	9754	9754					-0.08650162463095512
EESELQELSLL	11	Unmodified	_EESELQELSLL_					0	0	0			REV__ENST00000588652.5_1_19:45854889-45860860:-|nuORF	REV__ENST00000588652.5_1_19:45854889-45860860:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	646.2276000976562	2	645.32719	1288.63983	-0.33428	-0.00021572	-0.53192	-0.00034326	-0.8662	-0.00055898	645.3259221799789	55.858	2.1872	55.858	55.228	57.415	0					96	42	4	0	0	0	0.73189	1	19954	19954		7.1017	7.1017	1	3340000	+		9974	17347	7013	7075	9755	9755					0.007053003331066066
EESEPGHRPH	10	Unmodified	_EESEPGHRPH_					0	0	0		ENST00000585590.1_1_18:11689747-11702085:+|nuORF;ENST00000334049.10_1_18:11689618-11752858:+|nuORF	ENST00000585590.1_1_18:11689747-11702085:+|nuORF	ENST00000585590.1_1_18:11689747-11702085:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	587.6748657226562	2	587.765426	1173.5163	-0.27743	-0.00016307	0.065316	3.839E-05	-0.21212	-0.00012468	587.7652899188272	59.42	0.65982	59.42	59.143	59.803	0					37	12	4	0	0	0	0.60556	1	21285	21285		20.454	2.3186	1	7880400			9975	10789	7014	7076	9756	9756					-0.06351893203986947
EESEPLLSI	9	Unmodified	_EESEPLLSI_					0	0	0			REV__ENSG00000124383|ENST00000244230|MPHOSPH10	REV__ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-SECPEP	A375_MHC_IP_R1	1	507.9801330566406	2	508.760955	1015.50736	-0.44624	-0.00022703	1.7849	0.00090807	1.3386	0.00068104	508.76180943779144	37.755	0.15345	37.755	37.658	37.812	0					4	2	2	0	0	0	0.69504	1	12724	12724		7.9102	0	1	533480	+		9976	18301	7015	7077	9757	9757					0.00022320386972296546
EESFAEHLGY	10	Unmodified	_EESFAEHLGY_					0	0	0		SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant;nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2	SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant	SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	591.6590576171875	2	591.259111	1180.50367	-0.27471	-0.00016243	0.84962	0.00050235	0.57491	0.00033992	591.2593924604666	63.3	0.45972	63.3	63.018	63.477	0					12	8	2	0	0	0	0.06683	1	22901	22901		71.134	45.734	1	2503100			9977	1714	7016	7078	9758	9758					-0.07936349386886832
EESFDEPGAL	10	Unmodified	_EESFDEPGAL_					0	0	0			REV__ENST00000524697.1_8:145438664-145439010:+|nuORF	REV__ENST00000524697.1_8:145438664-145439010:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	546.6356811523438	2	547.237844	1092.46113	-0.65346	-0.0003576	-2.8081	-0.0015367	-3.4615	-0.0018943	547.7373287700738	85.02	0.35869	85.756	85.626	85.984	0.73602					9	6	2	0	0	0	0.90853	1	32290	32290		3.5965	1.5367	1	1183300	+		9978	22756	7017	7079	9759	9759					-0.08139744515142411
EESFFILKY	9	Unmodified	_EESFFILKY_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	A375_MHC_IP_R1	1	588.2251586914062	2	588.30279	1174.59103	-0.12678	-7.4588E-05	0.46651	0.00027445	0.33973	0.00019986	588.3029978743023	110.26	1.0695	110.26	109.83	110.9	0					53	20	4	0	0	0	0.13797	1	40518	40518		43.858	14.777	1	17617000			9979	8584	7018	7080	9760	9760					0.010714765546708804
EESFFILKY	9	Unmodified	_EESFFILKY_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	A375_MHC_IP_R2	2	588.7027587890625	2	588.30279	1174.59103	-0.46105	-0.00027124	0.28154	0.00016563	-0.1795	-0.0001056	588.3028941700323	109.45	0.9138	110.2	109.88	110.79	0.74683					50	17	4	0	0	0	0.0028027	1	41265	41265		139.14	35.785	1	13765000			9980	8584	7018	7080	9761	9761					0.010714765546708804
EESFIFLPI	9	Unmodified	_EESFIFLPI_					0	0	0		tr|U7SKZ6|U7SKZ6_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02005PE=3SV=1	tr|U7SKZ6|U7SKZ6_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02005PE=3SV=1	tr|U7SKZ6|U7SKZ6_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02005PE=3SV=1	MSMS	A375_MHC_IP_R2	2	547.692138671875	2	547.792058	1093.56956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.705	1	93.444	92.944	93.944	0.73902								0	0	0	0.1521	1	35252	35252		18.135	1.1927	1				9981	29488	7019	7081	9762	9762					0.02652091525965261
EESGARINI	9	Unmodified	_EESGARINI_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;ENST00000498121.1_1_21:47289198-47321357:+|nuORF;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2	ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-7|PCBP2	ENSG00000169564|ENST00000303577|PCBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	495.156005859375	2	494.756538	987.498523	-1.0667	-0.00052776	0.20599	0.00010191	-0.86072	-0.00042585	494.7567694795312	36.835	1.0173	37.606	37.258	38.275	0.7709					62	19	4	0	0	0	0.070665	1	13407	13407		78.728	40.754	1	55994000			9982	7414;9115	7020	7082	9763	9763					0.004273915411431517
EESGATFHTY	10	Unmodified	_EESGATFHTY_					0	0	0		nc|ENSG00000133121|Q9Y3M8-3|STARD13;nc|ENSG00000133121|Q9Y3M8-4|STARD13;nc|ENSG00000133121|Q9Y3M8-2|STARD13;ENSG00000133121|ENST00000336934|STARD13	nc|ENSG00000133121|Q9Y3M8-3|STARD13	nc|ENSG00000133121|Q9Y3M8-3|STARD13	MULTI-MSMS	A375_MHC_IP_R1	1	571.6428833007812	2	571.24346	1140.47237	-0.35326	-0.0002018	0.080379	4.5916E-05	-0.27289	-0.00015588	571.2430806169764	33.201	0.4043	33.201	32.989	33.393	0					16	7	3	0	0	0	0.042144	1	10838	10838		78.149	54.129	1	3076700			9983	4490	7021	7083	9764	9764					-0.09224922420980874
EESGATFHTY	10	Unmodified	_EESGATFHTY_					0	0	0		nc|ENSG00000133121|Q9Y3M8-3|STARD13;nc|ENSG00000133121|Q9Y3M8-4|STARD13;nc|ENSG00000133121|Q9Y3M8-2|STARD13;ENSG00000133121|ENST00000336934|STARD13	nc|ENSG00000133121|Q9Y3M8-3|STARD13	nc|ENSG00000133121|Q9Y3M8-3|STARD13	MULTI-MSMS	A375_MHC_IP_R2	2	571.6634521484375	2	571.24346	1140.47237	-0.33308	-0.00019027	-0.10726	-6.127E-05	-0.44034	-0.00025154	571.2429570741242	32.566	0.45765	33.303	33.01	33.468	0.73691					16	8	3	0	0	0	0.079406	1	11586	11586		68.081	41.813	1	2084800			9984	4490	7021	7083	9765	9765					-0.09224922420980874
EESGKESI	8	Unmodified	_EESGKESI_					0	0	0			REV__ENSG00000171316|ENST00000423902|CHD7	REV__ENSG00000171316|ENST00000423902|CHD7	MSMS	A375_MHC_IP_R2	2	439.77325439453125	2	439.708722	877.402892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.048	1	21.667	21.167	22.167	0.61932								0	0	0	0.16876	1	6598	6598		9.3474	0.75416	1		+		9985	21060	7022	7084	9766	9766					-0.04071381369760729
EESGKESI	8	Unmodified	_EESGKESI_					0	0	0			REV__ENSG00000171316|ENST00000423902|CHD7	REV__ENSG00000171316|ENST00000423902|CHD7	MSMS	A375_MHC_IP_R2	2	439.7730712890625	2	439.708722	877.402892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.824	1	23.454	22.954	23.954	0.63014								0	0	0	0.16876	1	7273	7273		9.3474	2.0582	1		+		9986	21060	7022	7084	9767	9767					-0.04071381369760729
EESGKMIFLM	10	Unmodified	_EESGKMIFLM_					0	0	0		ENSG00000186871|ENST00000334463|ERCC6L	ENSG00000186871|ENST00000334463|ERCC6L	ENSG00000186871|ENST00000334463|ERCC6L	MSMS	A375_MHC_IP_R2	2	592.686767578125	2	592.788135	1183.56172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.181	1	33.934	33.434	34.434	0.75225								0	0	0	0.14983	1	11866	11866		18.146	5.9057	1				9987	8787	7023	7085	9768	9768					-0.022721270574947994
EESGVPIKNY	10	Unmodified	_EESGVPIKNY_					0	0	0			REV__nc|ENSG00000134812|P27352-2|CBLIF	REV__nc|ENSG00000134812|P27352-2|CBLIF	MULTI-MSMS	A375_MHC_IP_R2	2	569.2130737304688	2	568.285128	1134.5557	-0.68275	-0.000388	0.1228	6.9785E-05	-0.55996	-0.00031821	568.285211772001	60.117	1.4707	60.864	60.501	61.972	0.74714					83	28	5	0	0	0	0.36703	1	22973	22973		36.127	13.391	1	159760000	+		9988	18802	7024	7086	9769	9769					-0.006191859731416116
EESILNHW	8	Unmodified	_EESILNHW_					0	0	0			REV__ENST00000334003.11_1_7:76959552-77026708:-|nuORF	REV__ENST00000334003.11_1_7:76959552-77026708:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	515.1612548828125	2	514.245806	1026.47706	-0.83169	-0.0004277	0.17275	8.8838E-05	-0.65894	-0.00033886	514.2458395934506	26.168	0.35572	26.168	26.017	26.373	0					15	6	3	0	0	0	0.74945	1	7805	7805		20.454	7.9221	1	4172100	+		9989	21944	7025	7087	9770	9770					-0.03511993487563814
EESISLTMAF	10	Unmodified	_EESISLTMAF_					0	0	0		MUC17|p.S159L|1|0.27|ENSG00000169876|chr7:101031892-101031892|C/T|missense_variant	MUC17|p.S159L|1|0.27|ENSG00000169876|chr7:101031892-101031892|C/T|missense_variant	MUC17|p.S159L|1|0.27|ENSG00000169876|chr7:101031892-101031892|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	564.7212524414062	2	564.26809	1126.52163	-0.41882	-0.00023633	3.7941	0.0021409	3.3753	0.0019046	564.268903207308	74.4	0.2032	74.4	74.247	74.451	0					5	3	2	0	0	0	0.87163	1	27102	27102		13.906	0.86358	1	355620			9990	14422	7026	7088	9771	9771					-0.03657350456410313
EESISPHLAPS	11	Unmodified	_EESISPHLAPS_					0	0	0			REV__ENST00000598018.1_1_19:49936751-49940072:-|nuORF	REV__ENST00000598018.1_1_19:49936751-49940072:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	584.1868896484375	2	583.788035	1165.56152	-0.21548	-0.00012579	-1.5846	-0.00092508	-1.8001	-0.0010509	583.7872800715273	25.28	0.35627	25.28	25.154	25.511	0					10	6	2	0	0	0	0.67989	1	7392	7392		17.113	4.0704	1	4559300	+		9991	17348	7027	7089	9772	9772					-0.014640874614542554
EESISYRIQ	9	Unmodified	_EESISYRIQ_					0	0	0			REV__PCDHGA6|p.P36S|1|0.36|ENSG00000253731|chr5:141374189-141374189|C/T|missense_variant	REV__PCDHGA6|p.P36S|1|0.36|ENSG00000253731|chr5:141374189-141374189|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	563.1822509765625	2	562.782753	1123.55095	-0.48159	-0.00027103	0.23267	0.00013094	-0.24892	-0.00014009	562.7835548249018	23.202	0.30646	23.202	23.074	23.381	0					6	5	2	0	0	0	0.65721	1	6368	6368		10.824	0	1	4283000	+		9992	27741	7028	7090	9773	9773					-0.005880701158957891
EESKEVIKW	9	Unmodified	_EESKEVIKW_					0	0	0		nc|ENSG00000135541|Q8N157-2|AHI1;ENSG00000135541|ENST00000265602|AHI1;nc|ENSG00000135541|Q8N157-3|AHI1	nc|ENSG00000135541|Q8N157-2|AHI1	nc|ENSG00000135541|Q8N157-2|AHI1	MULTI-MSMS	A375_MHC_IP_R2	2	574.7030639648438	2	574.303321	1146.59209	-0.51723	-0.00029705	-1.5726	-0.00090312	-2.0898	-0.0012002	574.303018571308	38.741	1.222	39.516	39.047	40.269	0.77451					42	23	3	0	0	0	0.012843	1	14526	14526		92.653	30.081	1	8327100			9993	4695	7029	7091	9774	9774					0.0246569092360005
EESKFVQKI	9	Unmodified	_EESKFVQKI_					0	0	0			REV__tr|U7STW3|U7STW3_FUSNUTrksystempotassiumuptakeproteinTrkHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01005PE=3SV=1	REV__tr|U7STW3|U7STW3_FUSNUTrksystempotassiumuptakeproteinTrkHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01005PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	554.6873779296875	2	554.305864	1106.59717	-0.67824	-0.00037595	-0.57708	-0.00031988	-1.2553	-0.00069583	554.305705666707	69.272	0.45493	70.006	69.829	70.284	0.73421					18	8	3	0	0	0	0.50702	1	26349	26349		25.399	11.493	1	3271600	+		9994	28513	7030	7092	9775	9775					0.04813994786195508
EESKPRTSLMA	11	Unmodified	_EESKPRTSLMA_					0	0	0		nc|ENSG00000064787|O75363|BCAS1;nc|ENSG00000064787|O75363-2|BCAS1;ENSG00000064787|ENST00000688948|BCAS1	nc|ENSG00000064787|O75363|BCAS1	nc|ENSG00000064787|O75363|BCAS1	MULTI-MSMS	A375_MHC_IP_R1	1	416.6126403808594	3	416.879939	1247.61799	0.31316	0.00013055	0.67782	0.00028257	0.99098	0.00041312	417.21535235986204	56.003	0.76262	56.003	55.584	56.347	0					21	14	2	0	0	0	0.72728	1	20067	20067		6.2344	0	1	1740900			9995	1360	7031	7093	9776	9776					0.004082171035634019
EESLEYQQF	9	Unmodified	_EESLEYQQF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-SECPEP	A375_MHC_IP_R2	2	587.15869140625	2	586.758943	1171.50333	-0.5409	-0.00031738	0.16667	9.7794E-05	-0.37423	-0.00021958	586.7593383364605	73.831	0.40735	74.568	74.449	74.856	0.73711					10	7	2	0	0	0	0.67483	1	28101	28101		10.074	0	1	1149500			9996	9183	7032	7094	9777	9777					-0.07555769106761545
EESLNIVKY	9	Unmodified	_EESLNIVKY_					0	0	0		ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000490178.1_1_7:6854391-6861977:-|nuORF	ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-SECPEP	A375_MHC_IP_R1	1	548.1898193359375	2	547.790047	1093.56554	-0.51649	-0.00028293	0.34605	0.00018956	-0.17045	-9.3369E-05	547.7901392050094	59.906	0.91531	59.906	59.599	60.514	0					41	17	4	0	0	0	0.011405	1	21523	21523		122.18	63.5	1	26410000			9997	3797	7033	7095	9778	9778					0.02250002032269549
EESLNIVKY	9	Unmodified	_EESLNIVKY_					0	0	0		ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000490178.1_1_7:6854391-6861977:-|nuORF	ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-SECPEP	A375_MHC_IP_R2	2	548.0450439453125	2	547.790047	1093.56554	-1.1908	-0.0006523	-0.037992	-2.0812E-05	-1.2288	-0.00067311	547.790005117621	59.21	1.0636	59.957	59.54	60.603	0.74714					51	20	4	0	0	0	0.010874	1	22393	22393		149.91	68.024	1	27843000			9998	3797	7033	7095	9779	9779					0.02250002032269549
EESLPILHSP	10	Unmodified	_EESLPILHSP_					0	0	0		nc|nan|Q49A92-4|C8orf34;ENST00000521406.5_1_8:69442879-69730478:+|nuORF;nc|nan|Q49A92-2|C8orf34;ENSG00000165084|ENST00000518698|C8orf34	nc|nan|Q49A92-4|C8orf34	nc|nan|Q49A92-4|C8orf34	MULTI-MSMS	A375_MHC_IP_R1	1	561.1973876953125	2	561.295496	1120.57644	-0.68391	-0.00038387	1.6668	0.00093556	0.98288	0.00055168	561.2965798003092	25.74	0.81104	25.74	25.562	26.373	0					40	15	4	0	0	0	0.55789	1	7728	7728		24.021	4.7636	1	28879000			9999	14977	7034	7096	9780	9780					0.02097404406526948
EESLRTYLF	9	Unmodified	_EESLRTYLF_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-SECPEP	A375_MHC_IP_R1	1	579.6756591796875	2	579.295496	1156.57644	-0.35943	-0.00020821	0.1571	9.1006E-05	-0.20233	-0.00011721	579.2956811228519	90.235	0.86299	90.235	89.931	90.794	0					31	16	3	0	0	0	0.41434	1	33099	33099		39.95	5.548	1	5807800			10000	8551	7035	7097	9781	9781					0.004414044065015332
EESLRTYLF	9	Unmodified	_EESLRTYLF_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-SECPEP	A375_MHC_IP_R2	2	579.6953125	2	579.295496	1156.57644	-0.1685	-9.7612E-05	-0.27395	-0.0001587	-0.44245	-0.00025631	579.2951506218706	89.446	0.65891	90.177	89.886	90.545	0.7318					24	12	3	0	0	0	0.33896	1	34035	34035		47.594	18.513	1	6015200			10001	8551	7035	7097	9782	9782					0.004414044065015332
EESLSNQRWI	10	Unmodified	_EESLSNQRWI_					0	0	0			REV__nc|ENSG00000109790|Q96PQ7-3|KLHL5	REV__nc|ENSG00000109790|Q96PQ7-3|KLHL5	MULTI-SECPEP	A375_MHC_IP_R1	1	421.95068359375	3	421.210565	1260.60986	-0.10545	-4.4418E-05	-0.43083	-0.00018147	-0.53629	-0.00022589	421.2104983599703	32.308	0.40921	32.308	32.075	32.485	0					12	7	3	0	0	0	0.91057	1	10457	10457		18.721	0	1	3420100	+		10002	27169	7036	7098	9783	9783					-0.01001593821570168
EESLSPFDYI	10	Unmodified	_EESLSPFDYI_					0	0	0			REV__UNC119|p.P198S|1|0.16|ENSG00000109103|chr17:28547695-28547695|G/A|missense_variant	REV__UNC119|p.P198S|1|0.16|ENSG00000109103|chr17:28547695-28547695|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	600.2451782226562	2	600.276969	1198.53938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.654	1	92.654	92.154	93.154	0								0	0	0	0.15158	1	34053	34053		14.838	4.0143	1		+		10003	28955	7037	7099	9784	9784					-0.05194311929903961
EESNLRGYK	9	Unmodified	_EESNLRGYK_					0	0	0			REV__DDR2|p.D64N|1|0.24|ENSG00000162733|chr1:162754628-162754628|G/A|missense_variant	REV__DDR2|p.D64N|1|0.24|ENSG00000162733|chr1:162754628-162754628|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	548.1898193359375	2	548.275095	1094.53564	-0.53014	-0.00029066	-0.70152	-0.00038463	-1.2317	-0.00067529	548.2748489308356	59.27	1.4737	59.27	58.99	60.464	0					52	28	2	0	0	0	0.12592	1	21523	21523		46.021	22	1	1716200	+		10004	15975	7038	7100	9785	9785					-0.00784936913078127
EESNLRGYK	9	Unmodified	_EESNLRGYK_					0	0	0			REV__DDR2|p.D64N|1|0.24|ENSG00000162733|chr1:162754628-162754628|G/A|missense_variant	REV__DDR2|p.D64N|1|0.24|ENSG00000162733|chr1:162754628-162754628|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	548.1886596679688	2	548.275095	1094.53564	-1.14	-0.00062505	-0.63369	-0.00034744	-1.7737	-0.00097249	548.2747470533593	58.564	1.4725	59.313	58.929	60.402	0.74894					47	28	2	0	0	0	0.12592	2	22346	22346;22393		46.021	27.875	1	2956000	+		10005	15975	7038	7100	9786;9787	9786					-0.00784936913078127
EESNTKIDL	9	Unmodified	_EESNTKIDL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000460826.1_1_2:242186148-242187441:-|nuORF;ENST00000488923.1_1_2:242186148-242186740:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	A375_MHC_IP_R1	1	525.1611938476562	2	524.761486	1047.50842	-0.32838	-0.00017232	-0.38862	-0.00020394	-0.717	-0.00037625	524.761268599186	37.403	1.1228	37.403	37.045	38.168	0					25	21	2	0	0	0	0.0575	1	12608	12608		86.332	21.097	1	5913900			10006	3330	7039	7101	9788	9788					-0.013434652441446815
EESNTKIDL	9	Unmodified	_EESNTKIDL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000460826.1_1_2:242186148-242187441:-|nuORF;ENST00000488923.1_1_2:242186148-242186740:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	A375_MHC_IP_R2	2	525.160888671875	2	524.761486	1047.50842	-0.89165	-0.0004679	-0.079913	-4.1935E-05	-0.97156	-0.00050984	524.7614368403462	36.542	0.76262	37.313	36.953	37.716	0.7709					30	14	3	0	0	0	0.0575	1	13344	13344		86.332	28.61	1	6720900			10007	3330	7039	7101	9789	9789					-0.013434652441446815
EESPAPPNEAY	11	Unmodified	_EESPAPPNEAY_					0	0	0		nc|ENSG00000163531|O94856-3|NFASC;ENST00000404977.6_1_1:204951067-204978869:+|nuORF;nc|ENSG00000163531|O94856-4|NFASC	nc|ENSG00000163531|O94856-3|NFASC	nc|ENSG00000163531|O94856-3|NFASC	MULTI-MSMS	A375_MHC_IP_R1	1	602.181884765625	2	602.26185	1202.50915	-0.7503	-0.00045188	0.66909	0.00040297	-0.081214	-4.8912E-05	602.2622921950241	68.083	0.75852	68.083	67.654	68.412	0					18	14	2	0	0	0	0.67989	1	24635	24635		17.113	0	1	903810			10008	14720	7040	7102	9790	9790					-0.08400670595074189
EESPENLFL	9	Unmodified	_EESPENLFL_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;ENST00000521080.5_1_8:95508528-95508681:-|nuORF	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-SECPEP	A375_MHC_IP_R2	2	1076.942138671875	1	1077.50988	1076.50261	0.29763	0.0003207	-0.29001	-0.00031249	0.007627	8.2181E-06	1077.509501206883	113.63	0.4079	114.34	114.02	114.43	0.70985					12	7	2	0	0	0	0.23313	1	42772	42772		62.573	12.64	1	4094300			10009	14737	7041	7103	9791	9791					-0.03258563755821342
EESPIIKPEP	10	Unmodified	_EESPIIKPEP_					0	0	0			REV__ENST00000518642.5_1_8:133584556-133590680:-|nuORF	REV__ENST00000518642.5_1_8:133584556-133590680:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	570.202392578125	2	569.803154	1137.59175	-0.62233	-0.0003546	-0.36571	-0.00020838	-0.98803	-0.00056298	569.8029120908312	26.081	0.50684	26.081	25.917	26.423	0					20	9	3	0	0	0	0.91932	1	7746	7746		24.021	10.115	1	6114100	+		10010	18486	7042	7104	9792	9792					0.028462712037253368
EESPIIKPEP	10	Unmodified	_EESPIIKPEP_					0	0	0			REV__ENST00000518642.5_1_8:133584556-133590680:-|nuORF	REV__ENST00000518642.5_1_8:133584556-133590680:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	570.2021484375	2	569.803154	1137.59175	-0.77268	-0.00044027	-0.52038	-0.00029652	-1.2931	-0.00073679	569.8029074856823	25.476	0.6611	26.12	25.924	26.585	0.64368					19	12	2	0	0	0	0.91057	1	8551	8551		27.629	12.791	1	5614500	+		10011	18486	7042	7104	9793	9793					0.028462712037253368
EESPLLVGPML	11	Unmodified	_EESPLLVGPML_					0	0	0		nc|ENSG00000086062|P15291-2|B4GALT1;ENSG00000086062|ENST00000379731|B4GALT1	nc|ENSG00000086062|P15291-2|B4GALT1	nc|ENSG00000086062|P15291-2|B4GALT1	MSMS	A375_MHC_IP_R2	2	592.7782592773438	2	592.815207	1183.61586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.289	1	86.025	85.525	86.525	0.73601								0	0	0	0.1624	1	32423	32423		6.2058	2.2614	1				10012	1828	7043	7105	9794	9794					0.03139788365729146
EESPSGRGW	9	Unmodified	_EESPSGRGW_					0	0	0		nc|ENSG00000182670|P53804-3|TTC3;nc|ENSG00000182670|P53804-2|TTC3;ENSG00000182670|ENST00000418766|TTC3	nc|ENSG00000182670|P53804-3|TTC3	nc|ENSG00000182670|P53804-3|TTC3	MULTI-SECPEP	A375_MHC_IP_R1	1	503.1246032714844	2	502.725238	1003.43592	-0.67048	-0.00033707	0.22348	0.00011235	-0.447	-0.00022472	502.7252620817008	26.783	0.35279	26.783	26.575	26.928	0					11	6	2	0	0	0	0.73008	1	8057	8057		17.113	17.113	1	3009200			10013	8429	7044	7106	9795	9795					-0.06565754527036916
EESPSGRGW	9	Unmodified	_EESPSGRGW_					0	0	0		nc|ENSG00000182670|P53804-3|TTC3;nc|ENSG00000182670|P53804-2|TTC3;ENSG00000182670|ENST00000418766|TTC3	nc|ENSG00000182670|P53804-3|TTC3	nc|ENSG00000182670|P53804-3|TTC3	MULTI-MATCH	A375_MHC_IP_R2	2		2	502.725238	1003.43592	-1.0462	-0.00052594	0.35875	0.00018035	-0.68742	-0.00034558	502.72527267410635	26.223	0.25423	26.882	26.754	27.008	0.65992	0.049924	6.9667E-05	NaN	17.113	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2442700			10014	8429	7044	7106							-0.06565754527036916
EESPVSQLF	9	Unmodified	_EESPVSQLF_					0	0	0		nc|ENSG00000204209|Q9UER7-3|DAXX;nc|ENSG00000204209|Q9UER7-5|DAXX;nc|ENSG00000204209|Q9UER7-4|DAXX;nc|ENSG00000204209|Q9UER7-2|DAXX;ENSG00000204209|ENST00000374542|DAXX	nc|ENSG00000204209|Q9UER7-3|DAXX	nc|ENSG00000204209|Q9UER7-3|DAXX	MULTI-MSMS	A375_MHC_IP_R1	1	518.6525268554688	2	518.253297	1034.49204	-0.42544	-0.00022049	-0.23816	-0.00012343	-0.6636	-0.00034391	518.2529003927051	105.38	0.50689	105.38	105.05	105.55	0					15	9	2	0	0	0	0.13797	1	38680	38680		43.858	11.553	1	1809300			10015	9415	7045	7107	9796	9796					-0.023825464102401384
EESQEIQKKL	10	Unmodified	_EESQEIQKKL_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	MULTI-MSMS	A375_MHC_IP_R2	2	411.6224060058594	3	411.22247	1230.64558	-0.31968	-0.00013146	-0.099961	-4.1106E-05	-0.41964	-0.00017256	411.2224210312774	21.213	0.81011	21.832	21.118	21.928	0.61932					25	15	3	0	0	0	0.069075	1	6637	6637		70.496	40.064	1	7418600			10016	4566	7046	7108	9797	9797					0.039484436354541685
EESQEIQKKL	10	Unmodified	_EESQEIQKKL_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	MULTI-SECPEP	A375_MHC_IP_R2	2	616.7297973632812	2	616.330067	1230.64558	-0.97073	-0.00059829	0.031518	1.9426E-05	-0.93921	-0.00057886	616.3300451301731	21.2	0.35306	21.819	21.575	21.928	0.61932					12	6	3	0	0	0	0.32321	1	6665	6665		64.927	42.269	1	1953000			10017	4566	7046	7108	9798	9798					0.039484436354541685
EESQEIQKKLY	11	Unmodified	_EESQEIQKKLY_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	MULTI-MSMS	A375_MHC_IP_R1	1	465.9765319824219	3	465.576913	1393.70891	-0.6845	-0.00031869	-0.255	-0.00011872	-0.9395	-0.00043741	465.576574920484	29.32	0.70842	29.32	28.745	29.453	0					19	13	3	0	0	0	0.15294	1	9165	9165		60.943	36.979	1	11445000			10018	4566	7047	7109	9799	9799					0.027803843526953642
EESQEIQKKLY	11	Unmodified	_EESQEIQKKLY_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	MSMS	A375_MHC_IP_R2	2	465.6402587890625	3	465.576913	1393.70891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.548	1	29.242	28.742	29.742	0.69397								0	0	0	0.053078	1	9870	9870		45.603	35.075	1				10019	4566	7047	7109	9800	9800					0.027803843526953642
EESQEIQKKLY	11	Unmodified	_EESQEIQKKLY_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	MSMS	A375_MHC_IP_R2	2	465.9759826660156	3	465.576913	1393.70891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.752	1	29.451	28.951	29.951	0.69872								0	0	0	0.070537	1	9974	9974		42.068	31.003	1				10020	4566	7047	7109	9801	9801					0.027803843526953642
EESQFHPLE	9	Unmodified	_EESQFHPLE_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000560694.1_1_17:78328263-78334101:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	A375_MHC_IP_R2	2	559.1978759765625	2	558.253828	1114.4931	-1.0247	-0.00057204	-0.19101	-0.00010663	-1.2157	-0.00067867	558.2537068093467	71.796	0.50641	72.53	72.213	72.72	0.73421					21	9	3	0	0	0	0.46038	1	27230	27230		21.747	4.8044	1	3480700			10021	7831	7048	7110	9802	9802					-0.05956332041341739
EESQIRIEL	9	Unmodified	_EESQIRIEL_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	MULTI-MSMS	A375_MHC_IP_R1	1	559.1979370117188	2	558.798403	1115.58225	-0.37953	-0.00021208	2.0517	0.0011465	1.6721	0.00093439	558.7983922952292	72.621	1.1144	72.621	71.866	72.98	0					48	21	4	0	0	0	0.010047	1	26406	26406		148.27	41.081	1	8065300			10022	4566	7049	7111	9803	9803					0.029085029181715072
EESQIRIEL	9	Unmodified	_EESQIRIEL_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	MULTI-SECPEP	A375_MHC_IP_R2	2	559.1978759765625	2	558.798403	1115.58225	-0.9867	-0.00055136	0.72132	0.00040307	-0.26538	-0.00014829	558.79836033965	71.741	1.012	72.475	71.959	72.971	0.73421					37	19	4	0	0	0	0.077986	1	27230	27230		70.332	22.583	1	7675000			10023	4566	7049	7111	9804	9804					0.029085029181715072
EESQPPQLY	9	Unmodified	_EESQPPQLY_					0	0	0		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	A375_MHC_IP_R1	1	546.234130859375	2	545.756204	1089.49785	-0.41801	-0.00022813	0.078563	4.2876E-05	-0.33944	-0.00018525	545.7565625876919	56.431	0.5575	56.431	56.041	56.599	0					17	10	2	0	0	0	0.46465	1	20139	20139		21.537	5.6898	1	1341900			10024	9684	7050	7112	9805	9805					-0.04331447898562146
EESQPPQLY	9	Unmodified	_EESQPPQLY_					0	0	0		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	A375_MHC_IP_R2	2	546.2337036132812	2	545.756204	1089.49785	-0.93373	-0.00050959	0.50499	0.0002756	-0.42874	-0.00023399	545.756535340258	55.778	0.56064	56.528	56.287	56.847	0.75014					15	10	2	0	0	0	0.36834	2	21062	21062;21072		26.268	11.43	1	1324700			10025	9684	7050	7112	9806;9807	9806					-0.04331447898562146
EESQPTHLI	9	Unmodified	_EESQPTHLI_					0	0	0		ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	MULTI-SECPEP	A375_MHC_IP_R2	2	527.62158203125	2	527.264196	1052.51384	-0.52265	-0.00027557	1.0218	0.00053875	0.49915	0.00026318	527.2650268347071	39.861	1.0662	40.636	39.914	40.98	0.77451					42	20	3	0	0	0	0.13208	1	14488	14488		57.722	12.022	1	11007000			10026	5719	7051	7113	9808	9808					-0.010317416616544506
EESQSLNEPS	10	Unmodified	_EESQSLNEPS_					0	0	0		ENSG00000154359|ENST00000398246|LONRF1;nc|ENSG00000154359|Q17RB8-2|LONRF1	ENSG00000154359|ENST00000398246|LONRF1	ENSG00000154359|ENST00000398246|LONRF1	MULTI-SECPEP	A375_MHC_IP_R2	2	373.600830078125	3	373.83153	1118.47276	0.40787	0.00015247	-0.64075	-0.00023953	-0.23288	-8.7059E-05	373.8295595488677	27.535	0.30433	28.213	28.047	28.351	0.67857					14	5	4	0	0	0	0.91442	1	9443	9443		10.315	4.5318	1	1625900			10027	6083	7052	7114	9809	9809					-0.08173547491787758
EESREDETP	9	Unmodified	_EESREDETP_					0	0	0			REV__ENSG00000127804|ENST00000263092|METTL16	REV__ENSG00000127804|ENST00000263092|METTL16	MULTI-SECPEP	A375_MHC_IP_R2	2	545.6392211914062	2	546.228007	1090.44146	-0.74953	-0.00040942	-2.3906	-0.0013058	-3.1401	-0.0017152	546.2267365742945	73.512	0.61231	74.247	73.99	74.602	0.7354					17	11	2	0	0	0	0.69507	1	27926	27926		9.3831	0.63772	1	1017700	+		10028	18430	7053	7115	9810	9810					-0.10014120525897852
EESREDETP	9	Unmodified	_EESREDETP_					0	0	0			REV__ENSG00000127804|ENST00000263092|METTL16	REV__ENSG00000127804|ENST00000263092|METTL16	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	546.228007	1090.44146	-0.53696	-0.0002933	-1.6053	-0.00087688	-2.1423	-0.0011702	546.2270001475905	74.217	0.45583	74.217	73.995	74.451	0	-0.015291	0.00015332	NaN	9.3831	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1367400	+		10029	18430	7053	7115							-0.10014120525897852
EESRIQIWF	9	Unmodified	_EESRIQIWF_					0	0	0		ENST00000447898.1_22:16151107-16151371:-|nuORF;ENSG00000258873|ENST00000554048|DUXA	ENST00000447898.1_22:16151107-16151371:-|nuORF	ENST00000447898.1_22:16151107-16151371:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	603.8963012695312	2	604.308938	1206.60332	-0.39843	-0.00024077	0.82353	0.00049767	0.4251	0.00025689	604.3095987184246	105.18	0.40744	105.94	105.67	106.07	0.76308					11	7	2	0	0	0	0.69507	1	39735	39735		19.257	1.1106	1	719940			10030	9922	7054	7116	9811	9811					0.008285130177227984
EESRLSAYY	9	Unmodified	_EESRLSAYY_					0	0	0		ENSG00000172179|ENST00000306482|PRL	ENSG00000172179|ENST00000306482|PRL	ENSG00000172179|ENST00000306482|PRL	MULTI-SECPEP	A375_MHC_IP_R1	1	559.2127075195312	2	559.261653	1116.50875	-0.12216	-6.8322E-05	1.3833	0.00077362	1.2611	0.0007053	559.7634085550723	45.26	0.45334	45.26	45.081	45.534	0					11	8	2	0	0	0	0.3213	1	15863	15863		46.021	8.047	1	3180700			10031	7686	7055	7117	9812	9812					-0.044840455242592725
EESRVKHQVEY	11	Unmodified	_EESRVKHQVEY_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MSMS	A375_MHC_IP_R2	2	468.63397216796875	3	468.568641	1402.68409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.507	1	22.126	21.626	22.626	0.61932								0	0	0	0.16275	1	6777	6777		4.4062	0.28952	1				10032	6247	7056	7118	9813	9813					-0.0011425073005284503
EESSAVQYF	9	Unmodified	_EESSAVQYF_					0	0	0		ENSG00000142453|ENST00000327064|CARM1;nc|ENSG00000142453|Q86X55-1|CARM1;nc|ENSG00000142453|Q86X55-2|CARM1	ENSG00000142453|ENST00000327064|CARM1	ENSG00000142453|ENST00000327064|CARM1	MULTI-MSMS	A375_MHC_IP_R1	1	530.6351928710938	2	530.235104	1058.45566	-0.58147	-0.00030832	0.57634	0.00030559	-0.0051332	-2.7218E-06	530.2351707323498	73.455	0.71017	73.455	73.082	73.792	0					34	13	3	0	0	0	0.32899	3	26745	26680;26742;26745		28.487	4.4663	1	3274600			10033	5308	7057	7119	9814;9815;9816	9816					-0.0712342330696174
EESSAVQYF	9	Unmodified	_EESSAVQYF_					0	0	0		ENSG00000142453|ENST00000327064|CARM1;nc|ENSG00000142453|Q86X55-1|CARM1;nc|ENSG00000142453|Q86X55-2|CARM1	ENSG00000142453|ENST00000327064|CARM1	ENSG00000142453|ENST00000327064|CARM1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	530.235104	1058.45566	-0.66909	-0.00035477	0.20463	0.0001085	-0.46445	-0.00024627	530.2349709151763	72.83	0.76317	73.566	73.073	73.836	0.73541	0.055255	-0.00021205	NaN	28.487	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2231900			10034	5308	7057	7119							-0.0712342330696174
EESSIRQYE	9	Unmodified	_EESSIRQYE_					0	0	0		ENSG00000127948|ENST00000461988|POR;POR|p.I444Sfs*101|1|0.39|ENSG00000127948|chr7:75985133-75985133|C/-|frameshift_variant	ENSG00000127948|ENST00000461988|POR	ENSG00000127948|ENST00000461988|POR	MSMS	A375_MHC_IP_R2	2	570.6895141601562	2	570.762017	1139.50948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.392	1	26.036	25.536	26.536	0.64368								0	0	0	0.13673	1	8478	8478		30.637	5.2372	1				10035	4112	7058	7120	9817	9817					-0.05469250875216858
EESTAFRY	8	Unmodified	_EESTAFRY_					0	0	0		nc|ENSG00000094880|Q9UJX2-3|CDC23;ENSG00000094880|ENST00000394886|CDC23	nc|ENSG00000094880|Q9UJX2-3|CDC23	nc|ENSG00000094880|Q9UJX2-3|CDC23	MSMS	A375_MHC_IP_R1	1	501.67645263671875	2	501.729989	1001.44543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.454	1	37.454	36.954	37.954	0								0	0	0	0.16876	1	12629	12629		25.399	0.72543	1				10036	2027	7059	7121	9818	9818					-0.055239862415191965
EESTPMGFCY	10	Unmodified	_EESTPMGFCY_					0	0	0		ENST00000487617.5_1_2:240002789-240024568:-|nuORF;nc|ENSG00000068024|P56524-2|HDAC4;nc|ENSG00000068024|P56524|HDAC4;ENSG00000068024|ENST00000543185|HDAC4	ENST00000487617.5_1_2:240002789-240024568:-|nuORF	ENST00000487617.5_1_2:240002789-240024568:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	582.7554931640625	2	582.222825	1162.4311	-0.33173	-0.00019314	1.685	0.00098105	1.3533	0.00078791	582.2245144918818	25.596	0.40812	25.596	25.408	25.816	0					12	7	3	0	0	0	0.70329	1	7514	7514		10.824	2.2306	1	1718000			10037	1449	7060	7122	9819	9819					-0.143621427763037
EESTPMGFCY	10	Unmodified	_EESTPMGFCY_					0	0	0		ENST00000487617.5_1_2:240002789-240024568:-|nuORF;nc|ENSG00000068024|P56524-2|HDAC4;nc|ENSG00000068024|P56524|HDAC4;ENSG00000068024|ENST00000543185|HDAC4	ENST00000487617.5_1_2:240002789-240024568:-|nuORF	ENST00000487617.5_1_2:240002789-240024568:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	582.222825	1162.4311	-0.79498	-0.00046286	2.3857	0.001389	1.5907	0.00092614	582.2244619600185	25.069	0.3057	25.713	25.619	25.924	0.64368	0.058521	0.00016893	NaN	10.824	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1892200			10038	1449	7060	7122							-0.143621427763037
EESTRFYD	8	Unmodified	_EESTRFYD_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	A375_MHC_IP_R2	2	523.6688842773438	2	523.724904	1045.43525	-0.71213	-0.00037296	-1.2741	-0.0006673	-1.9863	-0.0010403	523.7242356948977	65.967	1.4282	66.706	66.018	67.446	0.73811					43	27	2	0	0	0	0.77488	1	24861	24861		13.508	0.97634	1	2273800			10039	9326	7061	7123	9820	9820					-0.08564593966752909
EESVFQVTSP	10	Unmodified	_EESVFQVTSP_					0	0	0			REV__nc|ENSG00000020256|Q9NTW7-3|ZFP64	REV__nc|ENSG00000020256|Q9NTW7-3|ZFP64	MULTI-SECPEP	A375_MHC_IP_R2	2	562.2149047851562	2	561.769311	1121.52407	-0.71779	-0.00040323	-0.62	-0.0003483	-1.3378	-0.00075153	561.7683477647136	44.799	0.51149	45.568	45.289	45.8	0.7691					16	9	2	0	0	0	0.88918	1	16641	16641		8.7454	0	1	1147000	+		10040	16262	7062	7124	9821	9821					-0.03183178727090308
EESVPVSSY	9	Unmodified	_EESVPVSSY_					0	0	0		ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	MULTI-MSMS	A375_MHC_IP_R1	1	997.5140380859375	1	996.452033	995.444756	0.67139	0.00066901	-0.52013	-0.00051829	0.15126	0.00015073	996.451548585808	49.3	0.65842	49.3	49.033	49.692	0					23	12	3	0	0	0	0.2002	1	17430	17430		37.974	11.09	1	5829000			10041	4514	7063	7125	9822	9822					-0.053148256812278305
EESVPVSSY	9	Unmodified	_EESVPVSSY_					0	0	0		ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	MULTI-MSMS	A375_MHC_IP_R1	1	499.184326171875	2	498.729655	995.444756	0.072454	3.6135E-05	-0.78498	-0.00039149	-0.71253	-0.00035536	498.7293448894616	49.295	0.60806	49.295	49.033	49.642	0					20	11	3	0	0	0	0.2002	1	17445	17445		37.974	16.227	1	1808300			10042	4514	7063	7125	9823	9823					-0.053148256812278305
EESVPVSSY	9	Unmodified	_EESVPVSSY_					0	0	0		ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	MULTI-MSMS	A375_MHC_IP_R2	2	499.1784973144531	2	498.729655	995.444756	-0.59316	-0.00029583	0.079948	3.9872E-05	-0.51322	-0.00025596	498.7296188323234	48.71	0.5601	49.468	49.13	49.69	0.75737					17	10	2	0	0	0	0.050162	1	18296	18296		64.236	42.49	1	3089200			10043	4514	7063	7125	9824	9824					-0.053148256812278305
EESVPVSSY	9	Unmodified	_EESVPVSSY_					0	0	0		ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	MULTI-MATCH	A375_MHC_IP_R2	2		1	996.452033	995.444756	-0.061163	-6.0946E-05	-0.27041	-0.00026946	-0.33158	-0.0003304	996.4516878936014	48.726	0.56112	49.484	49.18	49.741	0.75737	0.091747	0.00014028	NaN	37.974	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5088300			10044	4514	7063	7125							-0.053148256812278305
EESWYIDY	8	Unmodified	_EESWYIDY_					0	0	0			REV__ENST00000529768.5_1_11:494693-494957:-|nuORF	REV__ENST00000529768.5_1_11:494693-494957:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	553.1297607421875	2	552.729655	1103.44476	-0.95768	-0.00052934	0.46058	0.00025458	-0.4971	-0.00027476	552.7300076161172	65.643	0.66151	66.381	66.018	66.68	0.73811					20	12	2	0	0	0	0.76248	1	24893	24893		16.942	1.0951	1	2229100	+		10045	16275	7064	7126	9825	9825					-0.10282825681224494
EESYFTTRTY	10	Unmodified	_EESYFTTRTY_					0	0	0		ENST00000486738.5_1_X:153608322-153609415:+|nuORF;ENST00000494443.5_1_X:153608322-153608766:+|nuORF;ENSG00000102119|ENST00000369842|EMD	ENST00000486738.5_1_X:153608322-153609415:+|nuORF	ENST00000486738.5_1_X:153608322-153609415:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	649.1907348632812	2	648.790775	1295.567	-0.20705	-0.00013433	-0.27928	-0.00018119	-0.48633	-0.00031553	648.7905344540532	51.398	0.4567	51.398	51.168	51.625	0					14	8	2	0	0	0	0.011522	1	18238	18238		117.84	87.997	1	3369500			10046	12586	7065	7127	9826	9826					-0.06896408669672383
EESYFTTRTY	10	Unmodified	_EESYFTTRTY_					0	0	0		ENST00000486738.5_1_X:153608322-153609415:+|nuORF;ENST00000494443.5_1_X:153608322-153608766:+|nuORF;ENSG00000102119|ENST00000369842|EMD	ENST00000486738.5_1_X:153608322-153609415:+|nuORF	ENST00000486738.5_1_X:153608322-153609415:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	649.190185546875	2	648.790775	1295.567	-0.79076	-0.00051304	2.054E-05	1.3326E-08	-0.79074	-0.00051302	648.7907566652457	50.813	0.60574	51.567	51.26	51.866	0.75406					22	11	3	0	0	0	0.073556	1	19132	19132		69.338	43.07	1	3380400			10047	12586	7065	7127	9827	9827					-0.06896408669672383
EESYSRMGY	9	Oxidation (M)	_EESYSRM(Oxidation (M))GY_		EESYSRM(1)GY		EESYSRM(54)GY	0	0	1		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-MSMS	A375_MHC_IP_R1	1	569.6293334960938	2	569.229496	1136.44444	-0.25351	-0.00014431	-0.018089	-1.0297E-05	-0.2716	-0.0001546	569.2295972334457	23.079	0.40549	23.079	22.924	23.33	0					9	7	2	0	0	0	0.082375	1	6303	6303		53.833	32.086	1	2014600			10048	3405	7066	7128	9828	9828		172			-0.11832568672730304
EETAYWKEL	9	Unmodified	_EETAYWKEL_					0	0	0		nc|ENSG00000166579|Q9GZM8-3|NDEL1;NDEL1|p.S23F|1|0.21|ENSG00000166579|chr17:8444339-8444339|C/T|missense_variant;ENST00000579880.5_1_17:8339285-8348278:+|nuORF;ENST00000580738.5_1_17:8339285-8349209:+|nuORF;ENSG00000166579|ENST00000334527|NDEL1;nc|ENSG00000166579|Q9GZM8-2|NDEL1	nc|ENSG00000166579|Q9GZM8-3|NDEL1	nc|ENSG00000166579|Q9GZM8-3|NDEL1	MULTI-SECPEP	A375_MHC_IP_R1	1	585.1795043945312	2	584.779679	1167.5448	0.21813	0.00012756	0.029885	1.7476E-05	0.24802	0.00014503	584.7795414130161	69.707	0.3539	69.707	69.478	69.832	0					10	6	2	0	0	0	0.63622	1	25323	25323		19.362	2.249	1	1966500			10049	14742	7067	7129	9829	9829					-0.0322658834743379
EETAYWKEL	9	Unmodified	_EETAYWKEL_					0	0	0		nc|ENSG00000166579|Q9GZM8-3|NDEL1;NDEL1|p.S23F|1|0.21|ENSG00000166579|chr17:8444339-8444339|C/T|missense_variant;ENST00000579880.5_1_17:8339285-8348278:+|nuORF;ENST00000580738.5_1_17:8339285-8349209:+|nuORF;ENSG00000166579|ENST00000334527|NDEL1;nc|ENSG00000166579|Q9GZM8-2|NDEL1	nc|ENSG00000166579|Q9GZM8-3|NDEL1	nc|ENSG00000166579|Q9GZM8-3|NDEL1	MULTI-SECPEP	A375_MHC_IP_R2	2	585.1798706054688	2	584.779679	1167.5448	-0.37143	-0.00021721	1.0495	0.00061374	0.6781	0.00039654	584.7799775909888	68.967	0.65845	69.702	69.474	70.133	0.73511					14	8	2	0	0	0	0.63622	1	26163	26163		24.991	11.085	1	1249900			10050	14742	7067	7129	9830	9830					-0.0322658834743379
EETDKRTAM	9	Unmodified	_EETDKRTAM_					0	0	0			REV__ENSG00000198842|ENST00000361200|STYXL2	REV__ENSG00000198842|ENST00000361200|STYXL2	MULTI-MSMS	A375_MHC_IP_R1	1	540.18017578125	2	540.753138	1079.49172	-0.59881	-0.00032381	1.3777	0.00074497	0.77884	0.00042116	540.7538827868325	52.202	0.66036	52.202	51.982	52.643	0					17	12	2	0	0	0	0.27715	1	18586	18586		32.305	4.6767	1	2884000	+		10051	22430	7068	7130	9831	9831					-0.04484289401739261
EETECQSSPK	10	Unmodified	_EETECQSSPK_					0	0	0		nc|ENSG00000149743|Q86TN4-2|TRPT1;nc|ENSG00000149743|Q86TN4-3|TRPT1;ENSG00000149743|ENST00000317459|TRPT1;nc|ENSG00000149743|Q86TN4-4|TRPT1;ENST00000544286.5_1_11:63991350-63991452:-|nuORF;ENST00000541928.1_1_11:63991350-63991698:-|nuORF	nc|ENSG00000149743|Q86TN4-2|TRPT1	nc|ENSG00000149743|Q86TN4-2|TRPT1	MSMS	A375_MHC_IP_R2	2	569.1846313476562	2	569.240061	1136.46557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.492	1	80.237	79.737	80.737	0.74474								0	0	0	0.15207	1	30166	30166		13.906	1.3745	1				10052	5827	7069	7131	9832	9832					-0.09720603363871305
EETEDYRQF	9	Unmodified	_EETEDYRQF_					0	0	0		nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-SECPEP	A375_MHC_IP_R1	1	609.188720703125	2	608.759475	1215.5044	-0.41805	-0.00025449	0.16933	0.00010308	-0.24873	-0.00015142	608.7596814343632	36.996	0.50405	36.996	36.745	37.249	0					18	9	3	0	0	0	0.41434	1	12458	12458		39.95	29.876	1	2700800			10053	1104	7070	7132	9833	9833					-0.09473554737860468
EETEDYRQF	9	Unmodified	_EETEDYRQF_					0	0	0		nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-SECPEP	A375_MHC_IP_R2	2	609.1583862304688	2	608.759475	1215.5044	-0.62485	-0.00038038	0.12365	7.5272E-05	-0.5012	-0.00030511	608.7594047235339	36.32	0.56006	37.091	36.799	37.359	0.7709					24	10	3	0	0	0	0.30925	1	13218	13218		41.956	28.913	1	3463900			10054	1104	7070	7132	9834	9834					-0.09473554737860468
EETEELMRKY	10	Unmodified	_EETEELMRKY_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-4|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	MULTI-MSMS	A375_MHC_IP_R1	1	443.611328125	3	443.211465	1326.61257	0.040472	1.7938E-05	-0.11199	-4.9637E-05	-0.071523	-3.17E-05	443.21145350513416	35.214	0.35592	35.214	35.013	35.369	0					11	6	2	0	0	0	0.47255	1	11724	11724		20.871	13.025	1	2787600			10055	5986	7071	7133	9835	9835					-0.037675064789254975
EETEELMRKY	10	Unmodified	_EETEELMRKY_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-4|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	MULTI-MSMS	A375_MHC_IP_R2	2	443.611328125	3	443.211465	1326.61257	-0.56675	-0.00025119	-0.096896	-4.2945E-05	-0.66364	-0.00029413	443.2114741516104	34.509	0.40728	35.261	35.057	35.464	0.75225					12	7	2	0	0	0	0.47255	1	12482	12482		20.871	6.0332	1	3198500			10056	5986	7071	7133	9836	9836					-0.037675064789254975
EETEFHGLRF	10	Unmodified	_EETEFHGLRF_					0	0	0		nc|ENSG00000170854|Q8IUF8-3|RIOX2;nc|ENSG00000170854|Q8IUF8-4|RIOX2;ENSG00000170854|ENST00000394198|RIOX2	nc|ENSG00000170854|Q8IUF8-3|RIOX2	nc|ENSG00000170854|Q8IUF8-3|RIOX2	MULTI-MSMS	A375_MHC_IP_R1	1	422.60357666015625	3	422.20341	1263.5884	0.10637	4.4911E-05	-0.13649	-5.7626E-05	-0.030117	-1.2715E-05	422.2033045760076	62.737	0.56385	62.737	62.505	63.069	0					13	10	2	0	0	0	0.66308	1	22699	22699		10.315	5.2677	1	1283600			10057	7549	7072	7134	9837	9837					-0.03284978850297193
EETEFHGLRF	10	Unmodified	_EETEFHGLRF_					0	0	0		nc|ENSG00000170854|Q8IUF8-3|RIOX2;nc|ENSG00000170854|Q8IUF8-4|RIOX2;ENSG00000170854|ENST00000394198|RIOX2	nc|ENSG00000170854|Q8IUF8-3|RIOX2	nc|ENSG00000170854|Q8IUF8-3|RIOX2	MULTI-MATCH	A375_MHC_IP_R2	2		3	422.20341	1263.5884	-0.38496	-0.00016253	-0.65405	-0.00027614	-1.039	-0.00043867	422.2029925352134	61.956	0.35258	62.699	62.471	62.824	0.74263	-0.018979	-0.0003572	NaN	10.315	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	887830			10058	7549	7072	7134							-0.03284978850297193
EETEGFKI	8	Unmodified	_EETEGFKI_					0	0	0		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MULTI-SECPEP	A375_MHC_IP_R1	1	477.1343688964844	2	476.73474	951.454927	-0.5014	-0.00023903	0.34172	0.00016291	-0.15968	-7.6125E-05	476.73477785570964	50.687	0.55799	50.687	50.459	51.017	0					27	10	4	0	0	0	0.64713	1	17982	17982		52.268	19.963	1	2292200			10059	4570	7073	7135	9838	9838					-0.022742179560054865
EETEGFKI	8	Unmodified	_EETEGFKI_					0	0	0		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MULTI-SECPEP	A375_MHC_IP_R2	2	477.1343688964844	2	476.73474	951.454927	-0.78096	-0.00037231	0.027068	1.2904E-05	-0.7539	-0.00035941	476.73463045523465	49.896	0.61069	50.651	50.344	50.955	0.75406					27	11	3	0	0	0	0.76996	1	18762	18762		43.858	15.371	1	2591800			10060	4570	7073	7135	9839	9839					-0.022742179560054865
EETETVTKSY	10	Unmodified	_EETETVTKSY_					0	0	0		ENSG00000122786|ENST00000361675|CALD1;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-3|CALD1	ENSG00000122786|ENST00000361675|CALD1	ENSG00000122786|ENST00000361675|CALD1	MULTI-SECPEP	A375_MHC_IP_R1	1	594.1766967773438	2	593.777333	1185.54011	-0.49658	-0.00029486	-0.033631	-1.9969E-05	-0.53021	-0.00031483	593.777232501937	24.473	0.50445	24.473	24.296	24.801	0					23	9	3	0	0	0	7.2178E-08	1	6956	6956		190.03	138.4	1	18370000			10061	3810	7074	7136	9840	9840					-0.045235172808588686
EETETVTKSY	10	Unmodified	_EETETVTKSY_					0	0	0		ENSG00000122786|ENST00000361675|CALD1;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-3|CALD1	ENSG00000122786|ENST00000361675|CALD1	ENSG00000122786|ENST00000361675|CALD1	MULTI-SECPEP	A375_MHC_IP_R2	2	594.1768798828125	2	593.777333	1185.54011	-0.82491	-0.00048981	-0.060077	-3.5672E-05	-0.88499	-0.00052549	593.777338920472	23.881	0.71327	24.511	24.333	25.046	0.63014					24	13	2	0	0	0	0.028865	1	7786	7786		103.82	63.874	1	14305000			10062	3810	7074	7136	9841	9841					-0.045235172808588686
EETFPDAKGW	10	Unmodified	_EETFPDAKGW_					0	0	0		nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MULTI-SECPEP	A375_MHC_IP_R1	1	590.6686401367188	2	590.269478	1178.5244	-0.43421	-0.0002563	-0.54309	-0.00032057	-0.9773	-0.00057687	590.2689936615662	65.402	0.7131	65.402	65.055	65.768	0					19	13	2	0	0	0	0.90144	1	23745	23745		18.373	7.5492	1	1350900			10063	2270	7075	7137	9842	9842					-0.0577175900725706
EETFPDAKGW	10	Unmodified	_EETFPDAKGW_					0	0	0		nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MULTI-MSMS	A375_MHC_IP_R2	2	590.66796875	2	590.269478	1178.5244	-0.57418	-0.00033892	-1.1593	-0.00068432	-1.7335	-0.0010232	590.2687521169748	64.834	0.76273	65.572	65.155	65.918	0.73812					18	14	2	0	0	0	0.21617	1	24589	24589		47.594	23.574	1	2092400			10064	2270	7075	7137	9843	9843					-0.0577175900725706
EETFPSCTRK	10	Unmodified	_EETFPSCTRK_					0	0	0			REV__nc|ENSG00000158055|Q8TE85-4|GRHL3	REV__nc|ENSG00000158055|Q8TE85-4|GRHL3	MULTI-MSMS	A375_MHC_IP_R1	1	399.7469482421875	3	399.857134	1196.54957	-0.16285	-6.5116E-05	-2.6017	-0.0010403	-2.7645	-0.0011054	400.1907329661192	40.713	0.50782	40.713	40.355	40.863	0					12	9	2	0	0	0	0.69833	1	14051	14051		7.9454	2.8979	1	1343600	+		10065	20059	7076	7138	9844	9844					-0.040840274763240814
EETGGDSWKY	10	Unmodified	_EETGGDSWKY_					0	0	0		ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11	ENSG00000086200|ENST00000325324|IPO11	ENSG00000086200|ENST00000325324|IPO11	MULTI-MSMS	A375_MHC_IP_R1	1	586.6483154296875	2	586.248743	1170.48293	-0.26673	-0.00015637	-0.26349	-0.00015447	-0.53022	-0.00031084	586.2487110858162	87.841	0.55973	87.841	87.441	88	0					15	10	2	0	0	0	0.70329	1	32225	32225		10.824	2.2306	1	3648600			10066	1831	7077	7139	9845	9845					-0.09548939766546027
EETGGDSWKY	10	Unmodified	_EETGGDSWKY_					0	0	0		ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11	ENSG00000086200|ENST00000325324|IPO11	ENSG00000086200|ENST00000325324|IPO11	MULTI-MSMS	A375_MHC_IP_R2	2	587.739013671875	2	586.248743	1170.48293	-0.53156	-0.00031163	-0.13059	-7.6558E-05	-0.66215	-0.00038819	586.2486876804705	76.434	1.0625	77.175	76.843	77.905	0.74052					53	20	4	0	0	0	0.6806	1	28915	28915		14.838	6.9281	1	10339000			10067	1831	7077	7139	9846	9846					-0.09548939766546027
EETGGEKSKK	10	Unmodified	_EETGGEKSKK_					0	0	0			REV__ENSG00000154781|ENST00000383794|CCDC174	REV__ENSG00000154781|ENST00000383794|CCDC174	MSMS	A375_MHC_IP_R2	2	546.702392578125	2	546.78021	1091.54587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.879	1	76.62	76.12	77.12	0.74052								0	0	0	0.14983	1	28806	28806		18.146	1.2041	1		+		10068	19897	7078	7140	9847	9847					0.0037562602146863355
EETGIEKGDVF	11	Unmodified	_EETGIEKGDVF_					0	0	0			REV__tr|U7SRI8|U7SRI8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01619PE=4SV=1	REV__tr|U7SRI8|U7SRI8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01619PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	612.6923217773438	2	612.29315	1222.57175	-0.61036	-0.00037372	1.1014	0.00067436	0.49101	0.00030064	612.7956307202193	70.834	0.65714	71.568	71.302	71.959	0.73421					25	12	3	0	0	0	0.56199	1	26872	26872		26.268	0	1	5774600	+		10069	28400	7079	7141	9848	9848					-0.030635245268967992
EETHAPNSNW	10	Unmodified	_EETHAPNSNW_					0	0	0		nc|ENSG00000170791|Q9BUK0-4|CHCHD7;ENST00000518169.1_1_8:57124347-57125478:+|nuORF	nc|ENSG00000170791|Q9BUK0-4|CHCHD7	nc|ENSG00000170791|Q9BUK0-4|CHCHD7	MULTI-SECPEP	A375_MHC_IP_R2	2	593.1519775390625	2	592.751984	1183.48942	-0.55635	-0.00032977	0.2176	0.00012898	-0.33874	-0.00020079	592.7522762668407	27.698	0.40429	28.376	28.2	28.604	0.67857					9	7	2	0	0	0	0.30731	1	9542	9542		72.968	51.221	1	2770600			10070	14765	7080	7142	9849	9849					-0.09499001815174779
EETHFIHL	8	Unmodified	_EETHFIHL_					0	0	0			REV__ENSG00000196417|ENST00000396408|ZNF765	REV__ENSG00000196417|ENST00000396408|ZNF765	MULTI-SECPEP	A375_MHC_IP_R1	1	513.4967651367188	2	513.256174	1024.49779	-0.33555	-0.00017222	-2.5712	-0.0013197	-2.9067	-0.0014919	513.2539983294462	72.365	0.65836	72.365	72.018	72.676	0					24	12	3	0	0	0	0.93416	1	26254	26254		14.582	0	1	2845100	+		10071	22194	7081	7143	9850	9850					-0.013474031079113047
EETHSLSTELK	11	Unmodified	_EETHSLSTELK_					0	0	0			REV__ENSG00000198796|ENST00000361673|ALPK2	REV__ENSG00000198796|ENST00000361673|ALPK2	MULTI-MSMS	A375_MHC_IP_R1	1	637.7169189453125	2	637.317157	1272.61976	-0.93044	-0.00059299	0.36656	0.00023362	-0.56388	-0.00035937	637.3171004891344	41.135	0.35364	41.135	40.963	41.317	0					16	6	3	0	0	0	0.7039	1	14223	14223		15.248	2.3759	1	2108000	+		10072	22422	7082	7144	9851	9851					-0.005644506068620103
EETHSLSTELK	11	Unmodified	_EETHSLSTELK_					0	0	0			REV__ENSG00000198796|ENST00000361673|ALPK2	REV__ENSG00000198796|ENST00000361673|ALPK2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	637.317157	1272.61976	-0.93044	-0.00059299	0.36656	0.00023362	-0.56388	-0.00035937	637.3171004891344	41.135	0.35364	41.135	40.963	41.317	0	-0.087554	0.00014392	NaN	15.248	16	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2108000	+		10073	22422	7082	7144							-0.005644506068620103
EETIDPVWW	9	Unmodified	_EETIDPVWW_					0	0	0		ENST00000567298.5_2_16:87764169-87782293:-|nuORF;ENST00000566349.5_1_16:87764169-87776609:-|nuORF;ENST00000564484.5_1_16:87764169-87795686:-|nuORF	ENST00000567298.5_2_16:87764169-87782293:-|nuORF	ENST00000567298.5_2_16:87764169-87782293:-|nuORF	MSMS	A375_MHC_IP_R2	2	587.7164916992188	2	587.774396	1173.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.562	1	52.314	51.814	52.814	0.75225								0	0	0	0.14359	1	19403	19403		28.487	10.34	1				10074	13533	7083	7145	9852	9852					-0.045585710018713144
EETILRHTL	9	Unmodified	_EETILRHTL_					0	0	0		nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9	nc|ENSG00000117859|Q96SU4-7|OSBPL9	nc|ENSG00000117859|Q96SU4-7|OSBPL9	MULTI-SECPEP	A375_MHC_IP_R1	1	556.66845703125	2	556.308938	1110.60332	-0.46775	-0.00026022	1.9462	0.0010827	1.4784	0.00082245	556.3094098586827	78.116	0.45918	78.116	77.742	78.201	0					9	8	2	0	0	0	0.69504	1	28460	28460		7.9102	0	1	989120			10075	3514	7084	7146	9853	9853					0.0524451301771478
EETISPRTY	9	Unmodified	_EETISPRTY_					0	0	0		nc|ENSG00000122778|Q9HCM3-2|KIAA1549;ENSG00000122778|ENST00000422774|KIAA1549	nc|ENSG00000122778|Q9HCM3-2|KIAA1549	nc|ENSG00000122778|Q9HCM3-2|KIAA1549	MULTI-SECPEP	A375_MHC_IP_R1	1	548.6688842773438	2	548.269478	1094.5244	-0.68824	-0.00037734	0.058076	3.1841E-05	-0.63017	-0.0003455	548.2694650440976	32.275	0.56165	32.275	31.973	32.535	0					18	10	3	0	0	0	0.14572	1	10461	10461		62.573	24.599	1	2601000			10076	3808	7085	7147	9854	9854					-0.019077590072356543
EETKAQQPF	9	Unmodified	_EETKAQQPF_					0	0	0		MAPK13|p.E319K|1|0.28|ENSG00000156711|chr6:36138992-36138992|G/A|missense_variant	MAPK13|p.E319K|1|0.28|ENSG00000156711|chr6:36138992-36138992|G/A|missense_variant	MAPK13|p.E319K|1|0.28|ENSG00000156711|chr6:36138992-36138992|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	539.2025756835938	2	539.264196	1076.51384	-0.67965	-0.00036651	-0.4096	-0.00022088	-1.0892	-0.00058739	539.2639111872599	85.89	0.86427	86.623	86.236	87.1	0.733					38	16	4	0	0	0	0.75466	1	32842	32842		7.9102	7.9102	1	3779400			10077	14352	7086	7148	9855	9855					-0.021357416616638147
EETKKAIKY	9	Unmodified	_EETKKAIKY_					0	0	0		ENST00000540889.1_1_12:131283048-131285998:-|nuORF;nc|ENSG00000111450|P32856-3|STX2;nc|ENSG00000111450|P32856-2|STX2;ENSG00000111450|ENST00000392373|STX2	ENST00000540889.1_1_12:131283048-131285998:-|nuORF	ENST00000540889.1_1_12:131283048-131285998:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1624145507812	2	555.313689	1108.61282	-1.1408	-0.00063352	2.3911	0.0013278	1.2502	0.00069428	555.3148179508714	26.562	0.35588	27.222	27.058	27.414	0.65992					11	6	2	0	0	0	0.775	1	8920	8920		15.847	7.2539	1	2218700			10078	2994	7087	7149	9856	9856					0.062862813032325
EETKTEEGLQ	10	Unmodified	_EETKTEEGLQ_					0	0	0		ENSG00000183638|ENST00000382483|RP1L1;RP1L1|p.E1323_E1324insGTKVIEGLQEERVQLE|1|0.03|ENSG00000183638|chr8:10610134-10610135|-/CTGCACCCTCTCTTCTTGCAGCCCTTCTATTACTTTAGTCCCCTCTAG|inframe_insertion	ENSG00000183638|ENST00000382483|RP1L1	ENSG00000183638|ENST00000382483|RP1L1	MULTI-MSMS	A375_MHC_IP_R2	2	582.6751098632812	2	582.274958	1162.53536	-0.39003	-0.0002271	0.41743	0.00024306	0.0274	1.5954E-05	582.2751947110089	30.624	0.55415	31.342	31.165	31.719	0.71857					19	10	2	0	0	0	0.15514	1	10764	10764		53.833	4.2785	1	9629100			10079	8513	7088	7150	9857	9857					-0.03940401423619733
EETKTEEGLQ	10	Unmodified	_EETKTEEGLQ_					0	0	0		ENSG00000183638|ENST00000382483|RP1L1;RP1L1|p.E1323_E1324insGTKVIEGLQEERVQLE|1|0.03|ENSG00000183638|chr8:10610134-10610135|-/CTGCACCCTCTCTTCTTGCAGCCCTTCTATTACTTTAGTCCCCTCTAG|inframe_insertion	ENSG00000183638|ENST00000382483|RP1L1	ENSG00000183638|ENST00000382483|RP1L1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	582.274958	1162.53536	-0.39003	-0.0002271	0.41743	0.00024306	0.0274	1.5954E-05	582.2751947110089	30.624	0.55415	31.342	31.165	31.719	0.71857	0.013032	-0.00031775	NaN	53.833	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9629100			10080	8513	7088	7150							-0.03940401423619733
EETLANNTW	9	Unmodified	_EETLANNTW_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	A375_MHC_IP_R1	1	539.6851806640625	2	539.246003	1076.47745	-0.81795	-0.00044108	0.23178	0.00012498	-0.58617	-0.00031609	539.2463183715531	66.02	0.558	66.02	65.768	66.326	0					14	10	2	0	0	0	0.46038	1	23871	23871		21.747	4.8044	1	1352200			10081	14737	7089	7151	9858	9858					-0.0577261855839879
EETLANNTW	9	Unmodified	_EETLANNTW_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MATCH	A375_MHC_IP_R2	2		2	539.246003	1076.47745	-0.97578	-0.00052619	0.48302	0.00026046	-0.49276	-0.00026572	539.2461800090017	65.452	0.55811	66.19	65.766	66.324	0.73812	0.085049	0.00015246	NaN	21.747	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	922550			10082	14737	7089	7151							-0.0577261855839879
EETLDTIKQY	10	Unmodified	_EETLDTIKQY_					0	0	0		ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;ENST00000562140.2_1_16:70398455-70404584:+|nuORF;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	620.7086791992188	2	620.3088	1238.60305	-0.40838	-0.00025332	0.043709	2.7113E-05	-0.36467	-0.00022621	620.3087031440855	50.716	0.60918	50.716	50.459	51.068	0					27	11	3	0	0	0	4.0354E-16	1	17958	17958		234.93	135.17	1	10554000			10083	6238	7090	7152	9859	9859					-0.006709514927933924
EETLDTIKQY	10	Unmodified	_EETLDTIKQY_					0	0	0		ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;ENST00000562140.2_1_16:70398455-70404584:+|nuORF;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	620.7083740234375	2	620.3088	1238.60305	-0.91867	-0.00056986	0.37194	0.00023072	-0.54673	-0.00033914	620.3089630989122	50.136	0.61058	50.89	50.599	51.209	0.75406					30	11	3	0	0	0	2.1049E-23	1	18812	18812		250.47	150.71	1	11149000			10084	6238	7090	7152	9860	9860					-0.006709514927933924
EETLLDQSF	9	Unmodified	_EETLLDQSF_					0	0	0		ENSG00000075131|ENST00000261881|TIPIN	ENSG00000075131|ENST00000261881|TIPIN	ENSG00000075131|ENST00000261881|TIPIN	MULTI-SECPEP	A375_MHC_IP_R1	1	540.6915893554688	2	541.256037	1080.49752	-0.62097	-0.00033611	-0.082392	-4.4595E-05	-0.70337	-0.0003807	541.25620640559	99.251	0.50808	99.251	98.914	99.422	0					17	9	3	0	0	0	0.65246	1	36440	36440		15.847	5.0233	1	1062800			10085	1599	7091	7153	9861	9861					-0.039508676184368596
EETLRVNKF	9	Unmodified	_EETLRVNKF_					0	0	0			REV__ENST00000458258.5_1_9:114981065-114981209:-|nuORF	REV__ENST00000458258.5_1_9:114981065-114981209:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	568.6846313476562	2	568.308938	1134.60332	-0.26386	-0.00014996	-0.14503	-8.242E-05	-0.40889	-0.00023238	568.3088831360399	43.578	0.55895	43.578	43.249	43.808	0					14	10	2	0	0	0	0.61758	1	15149	15149		29.082	0	1	1853800	+		10086	24948	7092	7154	9862	9862					0.04140513017705416
EETLSQKRF	9	Unmodified	_EETLSQKRF_					0	0	0		ZNF507|p.L574Ffs*7|1|0.34|ENSG00000168813|chr19:32354549-32354550|-/T|frameshift_variant;nc|ENSG00000168813|Q8TCN5-2|ZNF507;ZNF507|p.S830Kfs*19|1|0.01|ENSG00000168813|chr19:32382594-32382595|-/AGAT|frameshift_variant;ENSG00000168813|ENST00000355898|ZNF507	ZNF507|p.L574Ffs*7|1|0.34|ENSG00000168813|chr19:32354549-32354550|-/T|frameshift_variant	ZNF507|p.L574Ffs*7|1|0.34|ENSG00000168813|chr19:32354549-32354550|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	380.2680358886719	3	379.868139	1136.58259	-0.22399	-8.5085E-05	0.1963	7.4569E-05	-0.027684	-1.0516E-05	379.8681861609055	23.728	0.25419	24.358	24.18	24.435	0.63014					8	4	2	0	0	0	0.10103	1	7691	7691		57.249	40.975	1	5251400			10087	7349	7093	7155	9863	9863					0.01975922638052907
EETLSTLEY	9	Unmodified	_EETLSTLEY_					0	0	0		ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-SECPEP	A375_MHC_IP_R1	1	543.15576171875	2	542.755869	1083.49719	-0.66944	-0.00036334	0.85342	0.0004632	0.18398	9.9859E-05	542.7560925209743	47.237	0.46489	47.237	46.901	47.366	0					13	8	2	0	0	0	0.74875	1	16641	16641		21.747	9.2151	1	2355700			10088	4966	7094	7156	9864	9864					-0.041222873382594116
EETMCCSEDK	10	Unmodified	_EETMCCSEDK_					0	0	0			REV__ENST00000349305.8_1_6:135239555-135263608:-|nuORF	REV__ENST00000349305.8_1_6:135239555-135263608:-|nuORF	MSMS	A375_MHC_IP_R2	2	587.7275390625	2	587.706682	1173.39881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.206	1	98.966	98.466	99.466	0.75977								0	0	0	0.15435	1	37261	37261		6.7232	1.9672	1		+		10089	18046	7095	7157	9865	9865					-0.18095298241655655
EETNENGLW	9	Unmodified	_EETNENGLW_					0	0	0			REV__ENST00000520550.1_1_5:67588878-67591317:+|nuORF	REV__ENST00000520550.1_1_5:67588878-67591317:+|nuORF	MSMS	A375_MHC_IP_R1	1	546.2157592773438	2	546.235635	1090.45672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.754	1	76.754	76.254	77.254	0								0	0	0	0.14812	1	27984	27984		24.674	6.5389	1		+		10090	25701	7096	7158	9866	9866					-0.08489208938021875
EETNHGKLDF	10	Unmodified	_EETNHGKLDF_					0	0	0		nc|ENSG00000110841|Q86W92-3|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	397.5877380371094	3	397.187649	1188.54112	-0.085249	-3.386E-05	0.29657	0.00011779	0.21132	8.3932E-05	397.18772275299676	28.465	0.55676	28.465	28.288	28.845	0					12	10	2	0	0	0	0.77698	1	8804	8804		19.987	19.987	1	3539000			10091	14540	7097	7159	9867	9867					-0.045612581212935766
EETNIPKRL	9	Unmodified	_EETNIPKRL_					0	0	0		ENST00000590558.5_1_19:5692045-5712033:-|nuORF;nc|ENSG00000196365|P36776-3|LONP1;nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5696605-5708411:-|nuORF	ENST00000590558.5_1_19:5692045-5712033:-|nuORF	ENST00000590558.5_1_19:5692045-5712033:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	367.6083679199219	3	367.208384	1098.60332	-0.06172	-2.2664E-05	-0.44418	-0.00016311	-0.5059	-0.00018577	367.2083605902989	26.651	0.35279	26.651	26.575	26.928	0					11	6	3	0	0	0	0.50702	1	8005	8005		18.373	14.786	1	3143800			10092	9030	7098	7160	9868	9868					0.05796513017708094
EETNIPKRLY	10	Unmodified	_EETNIPKRLY_					0	0	0		ENST00000590558.5_1_19:5692045-5712033:-|nuORF;nc|ENSG00000196365|P36776-3|LONP1;nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5696605-5708411:-|nuORF	ENST00000590558.5_1_19:5692045-5712033:-|nuORF	ENST00000590558.5_1_19:5692045-5712033:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	421.96282958984375	3	421.562827	1261.66665	-0.22285	-9.3946E-05	2.6453	0.0011151	2.4224	0.0010212	421.5628764589389	36.852	0.60692	36.852	36.489	37.096	0					33	11	5	0	0	0	0.42123	1	12325	12325		32.898	5.8094	1	8713800			10093	9030	7099	7161	9869	9869					0.046284537349492894
EETNIPKRLY	10	Unmodified	_EETNIPKRLY_					0	0	0		ENST00000590558.5_1_19:5692045-5712033:-|nuORF;nc|ENSG00000196365|P36776-3|LONP1;nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5696605-5708411:-|nuORF	ENST00000590558.5_1_19:5692045-5712033:-|nuORF	ENST00000590558.5_1_19:5692045-5712033:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	632.2396850585938	2	631.840602	1261.66665	-0.92362	-0.00058358	-0.22242	-0.00014053	-1.146	-0.00072411	631.8402305711882	36.77	0.40451	36.77	36.541	36.945	0					9	7	2	0	0	0	0.4546	1	12354	12354		51.415	33.042	1	2561200			10094	9030	7099	7161	9870	9870					0.046284537349492894
EETNIPKRLY	10	Unmodified	_EETNIPKRLY_					0	0	0		ENST00000590558.5_1_19:5692045-5712033:-|nuORF;nc|ENSG00000196365|P36776-3|LONP1;nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5696605-5708411:-|nuORF	ENST00000590558.5_1_19:5692045-5712033:-|nuORF	ENST00000590558.5_1_19:5692045-5712033:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	421.9627380371094	3	421.562827	1261.66665	-0.24725	-0.00010423	-0.057366	-2.4184E-05	-0.30461	-0.00012841	421.5627753304451	36.053	0.56171	36.817	36.486	37.048	0.76338					17	10	2	0	0	0	0.37864	1	13078	13078		32.898	18.68	1	12642000			10095	9030	7099	7161	9871	9871					0.046284537349492894
EETNIPKRLY	10	Unmodified	_EETNIPKRLY_					0	0	0		ENST00000590558.5_1_19:5692045-5712033:-|nuORF;nc|ENSG00000196365|P36776-3|LONP1;nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5696605-5708411:-|nuORF	ENST00000590558.5_1_19:5692045-5712033:-|nuORF	ENST00000590558.5_1_19:5692045-5712033:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	632.239990234375	2	631.840602	1261.66665	-0.94301	-0.00059583	0.11912	7.5264E-05	-0.82389	-0.00052057	631.840551295225	35.995	0.3065	36.758	36.587	36.894	0.76338					11	5	3	0	0	0	0.62001	1	13130	13130		33.445	24.062	1	2028400			10096	9030	7099	7161	9872	9872					0.046284537349492894
EETNWSEHY	9	Unmodified	_EETNWSEHY_					0	0	0			REV__ENSG00000061794|ENST00000081029|MRPS35	REV__ENSG00000061794|ENST00000081029|MRPS35	MULTI-SECPEP	A375_MHC_IP_R1	1	399.227783203125	3	398.82812	1193.46253	0.042082	1.6783E-05	-0.91408	-0.00036456	-0.872	-0.00034778	398.8277422556208	107.65	0.56207	107.65	107.39	107.95	0					20	10	3	0	0	0	0.80005	1	39513	39513		5.2969	2.7984	1	1814700	+		10097	16451	7100	7162	9873	9873					-0.1264611042636261
EETNWSEHY	9	Unmodified	_EETNWSEHY_					0	0	0			REV__ENSG00000061794|ENST00000081029|MRPS35	REV__ENSG00000061794|ENST00000081029|MRPS35	MULTI-MATCH	A375_MHC_IP_R2	2		3	398.82812	1193.46253	-0.1477	-5.8906E-05	-1.4081	-0.00056158	-1.5558	-0.00062049	398.8275768051144	106.96	0.50652	107.72	107.5	108	0.75977	0.037469	-0.00026426	NaN	5.2969	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1975700	+		10098	16451	7100	7162							-0.1264611042636261
EETPELHLL	9	Unmodified	_EETPELHLL_					0	0	0		nc|ENSG00000204963|Q9UN72-2|PCDHA7;ENSG00000204963|ENST00000525929|PCDHA7;nc|ENSG00000204961|Q9Y5H5-2|PCDHA9;ENSG00000204961|ENST00000532602|PCDHA9;nc|ENSG00000204970|Q9Y5I3-2|PCDHA1;nc|ENSG00000204970|Q9Y5I3-3|PCDHA1;ENSG00000204970|ENST00000504120|PCDHA1	nc|ENSG00000204963|Q9UN72-2|PCDHA7;nc|ENSG00000204970|Q9Y5I3-3|PCDHA1	nc|ENSG00000204963|Q9UN72-2|PCDHA7	MULTI-SECPEP	A375_MHC_IP_R1	1	541.1823120117188	2	540.782222	1079.54989	-0.61303	-0.00033152	0.50313	0.00027208	-0.1099	-5.9434E-05	540.7822584938019	83.235	0.45749	83.235	82.974	83.432	0					13	8	2	0	0	0	0.24479	1	30516	30516		34.102	12.565	1	2058800			10099	9489;9492	7101	7163	9874	9874					0.013297155152031337
EETPELHLL	9	Unmodified	_EETPELHLL_					0	0	0		nc|ENSG00000204963|Q9UN72-2|PCDHA7;ENSG00000204963|ENST00000525929|PCDHA7;nc|ENSG00000204961|Q9Y5H5-2|PCDHA9;ENSG00000204961|ENST00000532602|PCDHA9;nc|ENSG00000204970|Q9Y5I3-2|PCDHA1;nc|ENSG00000204970|Q9Y5I3-3|PCDHA1;ENSG00000204970|ENST00000504120|PCDHA1	nc|ENSG00000204963|Q9UN72-2|PCDHA7;nc|ENSG00000204970|Q9Y5I3-3|PCDHA1	nc|ENSG00000204963|Q9UN72-2|PCDHA7	MULTI-MATCH	A375_MHC_IP_R2	2		2	540.782222	1079.54989	-0.87202	-0.00047157	-0.030245	-1.6356E-05	-0.90226	-0.00048793	540.7820375933941	82.363	0.40672	83.106	82.839	83.246	0.74293	-0.064537	-0.00020279	NaN	34.102	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2439600			10100	9489;9492	7101	7163							0.013297155152031337
EETPVVLQL	9	Unmodified	_EETPVVLQL_					0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-SECPEP	A375_MHC_IP_R1	1	514.6864624023438	2	514.28714	1026.55973	-0.29933	-0.00015394	-0.69577	-0.00035783	-0.99511	-0.00051177	514.2868345626896	111.66	1.1212	111.66	111.26	112.38	0					41	21	3	0	0	0	0.011358	1	40909	40909		120.45	42.301	1	10398000			10101	8390	7102	7164	9875	9875					0.04750903520562133
EETPVVLQL	9	Unmodified	_EETPVVLQL_					0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-SECPEP	A375_MHC_IP_R1	1	1027.079345703125	1	1027.567	1026.55973	0.38285	0.00039341	0.25381	0.0002608	0.63666	0.00065421	1027.5671346321687	111.65	0.66426	111.65	111.36	112.03	0					28	12	3	0	0	0	0.011145	1	40934	40934		118.89	51.551	1	11343000			10102	8390	7102	7164	9876	9876					0.04750903520562133
EETPVVLQL	9	Unmodified	_EETPVVLQL_					0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-MSMS	A375_MHC_IP_R2	2	514.6864624023438	2	514.28714	1026.55973	-0.58848	-0.00030265	-0.23335	-0.00012001	-0.82184	-0.00042266	514.2870927242783	110.92	0.76543	111.66	111.29	112.06	0.73692					36	14	3	0	0	0	0.0093345	2	41776	41776;41786		120.45	44.41	1	10921000			10103	8390	7102	7164	9877;9878	9877					0.04750903520562133
EETPVVLQL	9	Unmodified	_EETPVVLQL_					0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-SECPEP	A375_MHC_IP_R2	2	1027.380126953125	1	1027.567	1026.55973	0.20849	0.00021424	0.83349	0.00085647	1.042	0.0010707	1027.567411316335	110.95	0.6617	111.69	111.29	111.96	0.73692					38	12	4	0	0	0	0.011145	1	41844	41844		118.89	68.962	1	12080000			10104	8390	7102	7164	9879	9879					0.04750903520562133
EETPYLVKL	9	Unmodified	_EETPYLVKL_					0	0	0		nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1	nc|ENSG00000107404|O14640-2|DVL1	nc|ENSG00000107404|O14640-2|DVL1	MULTI-SECPEP	A375_MHC_IP_R1	1	546.7027587890625	2	546.30279	1090.59103	-0.62186	-0.00033972	-0.48876	-0.00026701	-1.1106	-0.00060674	546.3029122159227	76.731	0.66115	76.731	76.319	76.981	0					35	10	4	0	0	0	0.14554	1	27963	27963		71.922	0	1	12034000			10105	2738	7103	7165	9880	9880					0.04935476554669549
EETPYLVKL	9	Unmodified	_EETPYLVKL_					0	0	0		nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1	nc|ENSG00000107404|O14640-2|DVL1	nc|ENSG00000107404|O14640-2|DVL1	MULTI-SECPEP	A375_MHC_IP_R2	2	546.702392578125	2	546.30279	1090.59103	-0.78123	-0.00042679	-0.29072	-0.00015882	-1.0719	-0.00058561	546.3030293016888	75.889	0.91724	76.63	75.976	76.893	0.74052					37	12	4	0	0	0	0.23313	1	28806	28806		62.573	0	1	14712000			10106	2738	7103	7165	9881	9881					0.04935476554669549
EETQIDREVN	10	Unmodified	_EETQIDREVN_					0	0	0			REV__ENSG00000126870|ENST00000407559|DYNC2I1	REV__ENSG00000126870|ENST00000407559|DYNC2I1	MSMS	A375_MHC_IP_R2	2	616.7297973632812	2	616.791306	1231.56806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.22	1	21.839	21.339	22.339	0.61932								0	0	0	0.15332	1	6665	6665		10.074	0	1		+		10107	18403	7104	7166	9882	9882					-0.038461943007632726
EETQIGGERY	10	Unmodified	_EETQIGGERY_					0	0	0		nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	MULTI-MSMS	A375_MHC_IP_R1	1	591.6767578125	2	591.275292	1180.53603	-0.26136	-0.00015454	0.61668	0.00036463	0.35531	0.00021009	591.2756975825004	28.612	0.55536	28.612	28.39	28.945	0					23	10	3	0	0	0	0.011507	2	8843	8843;8857		118.21	74.351	1	17239000			10108	4699	7105	7167	9883;9884	9883					-0.047015619838930434
EETQIGGERY	10	Unmodified	_EETQIGGERY_					0	0	0		nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	MULTI-MSMS	A375_MHC_IP_R2	2	591.67529296875	2	591.275292	1180.53603	-0.71583	-0.00042325	0.6111	0.00036133	-0.10473	-6.1926E-05	591.2756901982069	28.041	0.55826	28.72	28.452	29.01	0.67857					25	10	3	0	0	0	0.006963	1	9654	9654		132.22	86.52	1	15924000			10109	4699	7105	7167	9885	9885					-0.047015619838930434
EETQKWFK	8	Unmodified	_EETQKWFK_					0	0	0		nc|ENSG00000171476|Q9BPY8|HOPX;ENSG00000171476|ENST00000420433|HOPX	nc|ENSG00000171476|Q9BPY8|HOPX	nc|ENSG00000171476|Q9BPY8|HOPX	MULTI-SECPEP	A375_MHC_IP_R2	2	1094.9481201171875	1	1095.54694	1094.53966	0.10342	0.0001133	-1.476	-0.001617	-1.3726	-0.0015037	1095.5475975913787	123.39	0.40315	123.76	123.43	123.83	0.3766					11	7	2	0	0	0	0.972	1	47238	47238		12.532	0	1	25076000			10110	7605	7106	7168	9886	9886					-0.0038284741938241496
EETQTLVREY	10	Unmodified	_EETQTLVREY_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-SECPEP	A375_MHC_IP_R1	1	634.7117919921875	2	634.311874	1266.6092	-0.43575	-0.0002764	0.0010013	6.3515E-07	-0.43475	-0.00027577	634.3117839881527	42.866	0.55864	42.866	42.587	43.146	0					18	10	2	0	0	0	0.49165	1	14908	14908		49.527	15.126	1	2938500			10111	9882	7107	7169	9887	9887					-0.013444332612607468
EETQVILREY	10	Unmodified	_EETQVILREY_					0	0	0		ENSG00000138031|ENST00000679454|ADCY3;nc|ENSG00000138031|O60266-2|ADCY3;ENST00000498288.1_3_2:25042803-25043656:-|nuORF	ENSG00000138031|ENST00000679454|ADCY3	ENSG00000138031|ENST00000679454|ADCY3	MULTI-MSMS	A375_MHC_IP_R1	1	640.7300415039062	2	640.330067	1278.64558	-0.62486	-0.00040011	-0.049978	-3.2002E-05	-0.67483	-0.00043212	640.3300439912191	59.291	0.30471	59.291	59.143	59.448	0					15	5	3	0	0	0	0.004656	1	21339	21339		135.72	99.591	1	4050700			10112	4944	7108	7170	9888	9888					0.017404436354354402
EETQVILREY	10	Unmodified	_EETQVILREY_					0	0	0		ENSG00000138031|ENST00000679454|ADCY3;nc|ENSG00000138031|O60266-2|ADCY3;ENST00000498288.1_3_2:25042803-25043656:-|nuORF	ENSG00000138031|ENST00000679454|ADCY3	ENSG00000138031|ENST00000679454|ADCY3	MULTI-MSMS	A375_MHC_IP_R2	2	640.7286987304688	2	640.330067	1278.64558	-1.0732	-0.00068717	-1.2635	-0.00080908	-2.3367	-0.0014963	640.3289087406423	58.606	0.76173	59.355	58.729	59.491	0.74894					22	14	3	0	0	0	0.011226	1	22166	22166		125.18	85.232	1	4288000			10113	4944	7108	7170	9889	9889					0.017404436354354402
EETREVQNL	9	Unmodified	_EETREVQNL_					0	0	0		ENST00000461349.5_1_9:132593183-132597524:-|nuORF;ENSG00000136819|ENST00000372447|C9orf78	ENST00000461349.5_1_9:132593183-132597524:-|nuORF	ENST00000461349.5_1_9:132593183-132597524:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	559.1688232421875	2	559.277835	1116.54112	-0.888	-0.00049664	-0.046833	-2.6193E-05	-0.93483	-0.00052283	559.2778109517425	26.894	0.30854	27.554	27.414	27.722	0.65992					7	5	2	0	0	0	0.04038	1	9140	9140		75.761	24.131	1	2049800			10114	4821	7109	7171	9890	9890					-0.012492581212882214
EETRLLNIL	9	Unmodified	_EETRLLNIL_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-SECPEP	A375_MHC_IP_R1	1	550.1841430664062	2	550.819138	1099.62372	-0.44523	-0.00024524	0.063585	3.5024E-05	-0.38164	-0.00021022	550.8191814010473	97.111	0.70859	97.111	96.781	97.49	0					33	13	3	0	0	0	0.087712	1	35701	35701		66.457	20.757	1	12069000			10115	976	7110	7172	9891	9891					0.07789683677515313
EETRLLNIL	9	Unmodified	_EETRLLNIL_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-SECPEP	A375_MHC_IP_R2	2	551.21875	2	550.819138	1099.62372	-0.77581	-0.00042733	0.37609	0.00020716	-0.39972	-0.00022017	550.8192721949979	96.21	0.66003	96.961	96.551	97.211	0.75045					31	12	3	0	0	0	0.046478	1	36478	36478		82.529	34.781	1	10649000			10116	976	7110	7172	9892	9892					0.07789683677515313
EETRVNQLF	9	Unmodified	_EETRVNQLF_					0	0	0		ENSG00000138867|ENST00000435822|GUCD1;nc|ENSG00000138867|Q96NT3|GUCD1;nc|ENSG00000138867|Q96NT3-3|GUCD1	ENSG00000138867|ENST00000435822|GUCD1	ENSG00000138867|ENST00000435822|GUCD1	MULTI-MSMS	A375_MHC_IP_R2	2	568.6903686523438	2	568.290745	1134.56694	-0.71828	-0.00040819	0.26216	0.00014898	-0.45612	-0.00025921	568.2906924671853	58.677	1.0659	59.426	59.083	60.149	0.74853					29	20	2	0	0	0	0.12771	1	22208	22208		45.7	3.86	1	2086400			10117	5043	7111	7173	9893	9893					0.005036361209931783
EETSEQITNV	10	Unmodified	_EETSEQITNV_					0	0	0		ENST00000359359.6_3_6:36882445-36884253:+|nuORF	ENST00000359359.6_3_6:36882445-36884253:+|nuORF	ENST00000359359.6_3_6:36882445-36884253:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	574.7366943359375	2	575.267133	1148.51971	-0.58935	-0.00033903	-2.5022	-0.0014394	-3.0916	-0.0017785	575.7673870347778	56.608	0.86658	57.358	56.948	57.815	0.75015					21	16	2	0	0	0	0.91442	1	21386	21386		11.495	11.495	1	1808300			10118	11014	7112	7174	9894	9894					-0.04860687940663411
EETSKEQF	8	Unmodified	_EETSKEQF_					0	0	0			REV__ENSG00000240445|ENST00000395675|FOXO3B	REV__ENSG00000240445|ENST00000395675|FOXO3B	MULTI-MSMS	A375_MHC_IP_R2	2	499.70574951171875	2	499.227279	996.440005	-0.71234	-0.00035562	-0.12887	-6.4333E-05	-0.84121	-0.00041995	499.2272409134385	65.634	0.61035	66.372	66.018	66.629	0.73811					25	11	3	0	0	0	0.7758	1	24791	24791		10.183	0.83596	1	2514400	+		10119	22779	7113	7175	9895	9895					-0.05835709823998059
EETSKIETY	9	Unmodified	_EETSKIETY_					0	0	0		ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	MULTI-SECPEP	A375_MHC_IP_R1	1	549.7188720703125	2	550.261319	1098.50808	-0.60886	-0.00033503	0.11959	6.5804E-05	-0.48927	-0.00026923	550.2612744735007	27.388	0.30377	27.388	27.229	27.533	0					9	5	2	0	0	0	0.67539	1	8289	8289		21.537	14.814	1	2095200			10120	8075	7114	7176	9896	9896					-0.03722884963985962
EETSKIETY	9	Unmodified	_EETSKIETY_					0	0	0		ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	MULTI-MSMS	A375_MHC_IP_R2	2	550.6611328125	2	550.261319	1098.50808	-1.045	-0.00057505	0.3475	0.00019122	-0.69754	-0.00038383	550.2614155798295	26.813	0.40973	27.473	27.313	27.722	0.65992					10	7	2	0	0	0	0.06083	1	9126	9126		60.074	23.947	1	2751600			10121	8075	7114	7176	9897	9897					-0.03722884963985962
EETTRISY	8	Unmodified	_EETTRISY_					0	0	0		ENSG00000091164|ENST00000217515|TXNL1;ENST00000587807.5_1_18:54270260-54293401:-|nuORF	ENSG00000091164|ENST00000217515|TXNL1	ENSG00000091164|ENST00000217515|TXNL1	MULTI-SECPEP	A375_MHC_IP_R2	2	499.9825134277344	2	499.743096	997.47164	-1.4155	-0.00070738	0.67951	0.00033958	-0.73598	-0.0003678	499.74334803983004	29.278	0.35495	29.977	29.83	30.185	0.69872					9	6	2	0	0	0	0.85138	1	10223	10223		31.268	21.885	1	3074200			10122	1974	7115	7177	9898	9898					-0.02719717070056049
EETVKLLCF	9	Unmodified	_EETVKLLCF_					0	0	0		USP9X|p.R2304C|1|0.18|ENSG00000124486|chrX:41224900-41224900|C/T|missense_variant	USP9X|p.R2304C|1|0.18|ENSG00000124486|chrX:41224900-41224900|C/T|missense_variant	USP9X|p.R2304C|1|0.18|ENSG00000124486|chrX:41224900-41224900|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	541.2001953125	2	541.283543	1080.55253	-0.84001	-0.00045468	2.6537	0.0014364	1.8137	0.00098173	541.2864844682572	27.799	0.30263	28.477	28.2	28.502	0.67857					6	5	2	0	0	0	0.76187	1	9420	9420		3.9444	0	1	994950			10123	30132	7116	7178	9899	9899					0.015478476484986459
EETVKYFL	8	Unmodified	_EETVKYFL_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000198838|Q15413-2|RYR3	MSMS	A375_MHC_IP_R1	1	514.6864624023438	2	514.768583	1027.52261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.6	1	111.6	111.1	112.1	0								0	0	0	0.16876	1	40909	40909		26.341	0	1		+		10124	22428	7117	7179	9900	9900					0.009952319747981164
EETVSGLKGY	10	Unmodified	_EETVSGLKGY_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MSMS	A375_MHC_IP_R1	1	542.1716918945312	2	541.771854	1081.52915	-0.26476	-0.00014344	-0.12771	-6.9192E-05	-0.39248	-0.00021263	541.7717486714752	38.857	0.50721	38.857	38.526	39.033	0					16	9	2	0	0	0	0.011373	1	13191	13191		121.53	77.676	1	14829000			10125	1521	7118	7180	9901	9901					-0.008348748644721127
EETVSGLKGY	10	Unmodified	_EETVSGLKGY_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-SECPEP	A375_MHC_IP_R2	2	542.1715087890625	2	541.771854	1081.52915	-1.1011	-0.00059657	0.15693	8.5019E-05	-0.94421	-0.00051155	541.7718735284479	38.091	0.46227	38.866	38.636	39.098	0.77451					14	8	2	0	0	0	0.02507	1	13973	13973		110.55	62.804	1	12618000			10126	1521	7118	7180	9902	9902					-0.008348748644721127
EETVVPKTF	9	Unmodified	_EETVVPKTF_					0	0	0		ENSG00000147789|ENST00000532777|ZNF7;nc|ENSG00000147789|P17097-2|ZNF7	ENSG00000147789|ENST00000532777|ZNF7	ENSG00000147789|ENST00000532777|ZNF7	MULTI-SECPEP	A375_MHC_IP_R2	2	525.6788330078125	2	525.279315	1048.54408	-0.89558	-0.00047043	-0.57103	-0.00029995	-1.4666	-0.00077038	525.2793637365552	52.362	0.6066	53.114	52.78	53.386	0.75225					26	11	3	0	0	0	0.061442	1	19704	19704		82.529	36.83	1	9599300			10127	5704	7119	7181	9903	9903					0.021746170035157775
EETWFYTF	8	Unmodified	_EETWFYTF_					0	0	0			REV__tr|U7SPY1|U7SPY1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01660PE=3SV=1	REV__tr|U7SPY1|U7SPY1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01660PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	562.1433715820312	2	561.742565	1121.47058	-0.52904	-0.00029718	-0.0051	-2.8649E-06	-0.53414	-0.00030005	561.7416648094768	64.969	0.96622	64.969	64.343	65.309	0					32	18	3	0	0	0	0.6817	1	23505	23505		40.449	4.4044	1	4202700	+		10128	28373	7120	7182	9904	9904					-0.08529931438965832
EETWLSSL	8	Unmodified	_EETWLSSL_					0	0	0		ENST00000556777.1_1_14:22932196-22950248:-|nuORF	ENST00000556777.1_1_14:22932196-22950248:-|nuORF	ENST00000556777.1_1_14:22932196-22950248:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	482.62591552734375	2	482.73474	963.454927	-0.50209	-0.00024238	0.19599	9.4613E-05	-0.3061	-0.00014776	482.7348539188711	88.838	1.5223	89.57	89.228	90.751	0.7318					38	29	2	0	0	0	0.75322	1	34168	34168		19.439	2.4967	1	1185900			10129	13446	7121	7183	9905	9905					-0.028262179559760625
EETWNFLQS	9	Unmodified	_EETWNFLQS_					0	0	0		ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33	ENSG00000077254|ENST00000370794|USP33	ENSG00000077254|ENST00000370794|USP33	MULTI-MSMS	A375_MHC_IP_R1	1	577.6609497070312	2	577.261653	1152.50875	-0.087932	-5.076E-05	0.18693	0.00010791	0.098995	5.7146E-05	577.2614800060188	62.968	0.56356	62.968	62.66	63.223	0					20	10	3	0	0	0	0.41409	1	22747	22747		24.021	1.2843	1	2854400			10130	1651	7122	7184	9906	9906					-0.0614004552426195
EETWSRPL	8	Unmodified	_EETWSRPL_					0	0	0		ENST00000274853.7_1_6:30654418-30654859:-|nuORF	ENST00000274853.7_1_6:30654418-30654859:-|nuORF	ENST00000274853.7_1_6:30654418-30654859:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	509.6729431152344	2	509.253631	1016.49271	-0.45951	-0.00023401	-0.16605	-8.4563E-05	-0.62556	-0.00031857	509.2532722857384	33.398	0.86229	33.398	32.785	33.648	0					27	16	3	0	0	0	0.75322	1	10698	10698		19.439	1.304	1	13102000			10131	10402	7123	7185	9907	9907					-0.014877069705221402
EETYYHHI	8	Unmodified	_EETYYHHI_					0	0	0		ENSG00000198855|ENST00000552695|FICD;ENST00000361549.2_1_12:108912031-108913249:+|nuORF	ENSG00000198855|ENST00000552695|FICD	ENSG00000198855|ENST00000552695|FICD	MULTI-MSMS	A375_MHC_IP_R2	2	546.7260131835938	2	546.243264	1090.47197	-0.79826	-0.00043605	-3.1599	-0.0017261	-3.9582	-0.0021621	546.7410782438085	75.599	0.56158	76.34	76.129	76.691	0.74052					15	10	2	0	0	0	0.7479	1	28772	28772		20.871	2.7362	1	1068600			10132	9351	7124	7186	9908	9908					-0.06964297350191373
EEVAEAITQF	10	Unmodified	_EEVAEAITQF_					0	0	0		ENSG00000111110|ENST00000228705|PPM1H	ENSG00000111110|ENST00000228705|PPM1H	ENSG00000111110|ENST00000228705|PPM1H	MSMS	A375_MHC_IP_R2	2	568.673828125	2	568.777136	1135.53972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.694	1	56.445	55.945	56.945	0.75038								0	0	0	0.15038	1	21043	21043		17.113	1.2657	1				10133	2965	7125	7187	9909	9909					-0.02262892210069367
EEVAELFQRL	10	Unmodified	_EEVAELFQRL_					0	0	0		nc|ENSG00000068400|Q4V328-4|GRIPAP1;ENSG00000068400|ENST00000376423|GRIPAP1	nc|ENSG00000068400|Q4V328-4|GRIPAP1	nc|ENSG00000068400|Q4V328-4|GRIPAP1	MULTI-MSMS	A375_MHC_IP_R1	1	617.7272338867188	2	617.327328	1232.6401	-0.32111	-0.00019823	-0.29089	-0.00017957	-0.612	-0.00037781	617.3268786729205	104.26	0.66187	104.26	103.98	104.64	0					31	12	4	0	0	0	0.006963	1	38288	38288		165.72	95.388	1	6374500			10134	1460	7126	7188	9910	9910					0.033087648436321615
EEVAETGSETW	11	Unmodified	_EEVAETGSETW_					0	0	0		ENST00000561152.1_1_15:57211715-57212066:+|nuORF	ENST00000561152.1_1_15:57211715-57212066:+|nuORF	ENST00000561152.1_1_15:57211715-57212066:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	619.2039184570312	2	619.26459	1236.51463	-0.46595	-0.00028855	-0.37752	-0.00023378	-0.84347	-0.00052233	619.2642437873494	65.08	0.55669	65.08	64.7	65.257	0					16	10	2	0	0	0	0.72949	1	23601	23601		9.3831	0	1	1465400			10135	13504	7127	7189	9911	9911					-0.09416991803277597
EEVAQQKSL	9	Unmodified	_EEVAQQKSL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R1	1	515.8125610351562	2	516.272021	1030.52949	-0.42212	-0.00021793	0.012348	6.3749E-06	-0.40978	-0.00021156	516.2719912188121	23.049	0.25126	23.049	22.873	23.125	0					6	4	2	0	0	0	0.11849	1	6235	6235		53.404	13.454	1	2447800			10136	14788	7128	7190	9912	9912					0.01544544855391905
EEVAVLRWV	9	Unmodified	_EEVAVLRWV_					0	0	0			REV__ENST00000512711.1_1_4:157757122-157795072:-|nuORF	REV__ENST00000512711.1_1_4:157757122-157795072:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	551.7056274414062	2	550.808574	1099.60259	-1.3777	-0.00075886	-2.5361	-0.0013969	-3.9138	-0.0021557	551.3074853657672	37.187	0.55656	37.958	37.615	38.171	0.7709					19	10	3	0	0	0	0.63811	1	13666	13666		12.532	0.89125	1	4480200	+		10137	19474	7129	7191	9913	9913					0.05677718368656315
EEVAVLRWV	9	Unmodified	_EEVAVLRWV_					0	0	0			REV__ENST00000512711.1_1_4:157757122-157795072:-|nuORF	REV__ENST00000512711.1_1_4:157757122-157795072:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	550.808574	1099.60259	-0.83277	-0.0004587	-1.9353	-0.001066	-2.7681	-0.0015247	550.8086065483394	38.092	0.4059	38.092	37.862	38.268	0	0.066901	0.00034398	NaN	12.532	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3725400	+		10138	19474	7129	7191							0.05677718368656315
EEVAVLRWV	9	Unmodified	_EEVAVLRWV_					0	0	0			REV__ENST00000512711.1_1_4:157757122-157795072:-|nuORF	REV__ENST00000512711.1_1_4:157757122-157795072:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	550.808574	1099.60259	-1.3777	-0.00075886	-2.5361	-0.0013969	-3.9138	-0.0021557	551.3074853657672	37.187	0.55656	37.958	37.615	38.171	0.7709	-0.066901	-0.00031782	NaN	12.532	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4480200	+		10139	19474	7129	7191							0.05677718368656315
EEVCRCVPSY	10	Unmodified	_EEVCRCVPSY_					0	0	0		ENSG00000150630|ENST00000618562|VEGFC	ENSG00000150630|ENST00000618562|VEGFC	ENSG00000150630|ENST00000618562|VEGFC	MULTI-MSMS	A375_MHC_IP_R2	2	593.2127075195312	2	592.757366	1183.50018	-0.46209	-0.00027391	-2.3667	-0.0014029	-2.8288	-0.0016768	592.756383824819	90.727	0.30461	91.461	91.261	91.566	0.73451					7	5	2	0	0	0	0.66712	1	34529	34529		15.847	2.8047	1	811390			10140	5854	7130	7192	9914	9914					-0.08423058756761748
EEVDLQTAL	9	Unmodified	_EEVDLQTAL_					0	0	0		nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46	nc|ENSG00000145833|Q7L014|DDX46	nc|ENSG00000145833|Q7L014|DDX46	MULTI-SECPEP	A375_MHC_IP_R1	1	509.65838623046875	2	509.258579	1016.50261	-0.62767	-0.00031965	-0.21459	-0.00010928	-0.84227	-0.00042893	509.258443615639	86.382	0.45706	86.382	86.121	86.578	0					15	8	2	0	0	0	0.47368	1	31697	31697		20.454	16.124	1	2340200			10141	5586	7131	7193	9915	9915					-0.00498563755820669
EEVDQVARAY	10	Unmodified	_EEVDQVARAY_					0	0	0		ENSG00000133028|ENST00000255390|SCO1	ENSG00000133028|ENST00000255390|SCO1	ENSG00000133028|ENST00000255390|SCO1	MULTI-SECPEP	A375_MHC_IP_R1	1	590.6849365234375	2	590.28566	1178.55677	0.039544	2.3342E-05	-0.2811	-0.00016593	-0.24156	-0.00014259	590.2854383853492	39.008	0.60969	39.008	38.832	39.441	0					32	11	4	0	0	0	0.028556	1	13287	13287		189.73	82.544	1	49478000			10142	4475	7132	7194	9916	9916					-0.025369716042405344
EEVDQVARAY	10	Unmodified	_EEVDQVARAY_					0	0	0		ENSG00000133028|ENST00000255390|SCO1	ENSG00000133028|ENST00000255390|SCO1	ENSG00000133028|ENST00000255390|SCO1	MULTI-SECPEP	A375_MHC_IP_R2	2	590.684814453125	2	590.28566	1178.55677	-0.93926	-0.00055443	-0.030769	-1.8163E-05	-0.97003	-0.0005726	590.2855867752269	38.365	0.50672	39.139	38.946	39.453	0.77451					29	9	4	0	0	0	0.039687	1	14105	14105		192.32	85.134	1	47282000			10143	4475	7132	7194	9917	9917					-0.025369716042405344
EEVDSSVKKI	10	Unmodified	_EEVDSSVKKI_					0	0	0		ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L;nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	ENSG00000196141|ENST00000409140|SPATS2L	ENSG00000196141|ENST00000409140|SPATS2L	MULTI-MSMS	A375_MHC_IP_R1	1	567.7048950195312	2	567.306061	1132.59757	-0.61268	-0.00034757	-0.021557	-1.2229E-05	-0.63423	-0.0003598	567.3060322072065	23.879	0.60988	23.879	23.737	24.347	0					24	11	5	0	0	0	2.1358E-10	1	6663	6663		214.05	128.41	1	32600000			10144	9004	7133	7195	9918	9918					0.03657369715392633
EEVDSSVKKI	10	Unmodified	_EEVDSSVKKI_					0	0	0		ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L;nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	ENSG00000196141|ENST00000409140|SPATS2L	ENSG00000196141|ENST00000409140|SPATS2L	MULTI-SECPEP	A375_MHC_IP_R1	1	378.25634765625	3	378.539799	1132.59757	0.09211	3.4867E-05	-0.017773	-6.7277E-06	0.074337	2.814E-05	378.5397830424041	23.892	1.1148	23.892	23.737	24.852	0					49	21	4	0	0	0	0.01356	1	6633	6633		87.123	55.086	1	98930000			10145	9004	7133	7195	9919	9919					0.03657369715392633
EEVDSSVKKI	10	Unmodified	_EEVDSSVKKI_					0	0	0		ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L;nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	ENSG00000196141|ENST00000409140|SPATS2L	ENSG00000196141|ENST00000409140|SPATS2L	MULTI-MSMS	A375_MHC_IP_R2	2	567.7059936523438	2	567.306061	1132.59757	-0.64295	-0.00036475	0.16932	9.6054E-05	-0.47363	-0.00026869	567.306241067596	23.779	0.30479	24.41	24.18	24.485	0.63014					10	5	3	0	0	0	0.094079	1	7735	7735		64.927	33.658	1	5459500			10146	9004	7133	7195	9920	9920					0.03657369715392633
EEVDSSVKKI	10	Unmodified	_EEVDSSVKKI_					0	0	0		ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L;nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	ENSG00000196141|ENST00000409140|SPATS2L	ENSG00000196141|ENST00000409140|SPATS2L	MULTI-SECPEP	A375_MHC_IP_R2	2	378.939697265625	3	378.539799	1132.59757	-0.14928	-5.651E-05	-0.052465	-1.986E-05	-0.20175	-7.637E-05	378.53977028553186	23.779	0.61248	24.41	24.129	24.742	0.63014					24	11	3	0	0	0	0.24808	1	7710	7710		35.08	21.561	1	20408000			10147	9004	7133	7195	9921	9921					0.03657369715392633
EEVDSSVKKI	10	Unmodified	_EEVDSSVKKI_					0	0	0		ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L;nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	ENSG00000196141|ENST00000409140|SPATS2L	ENSG00000196141|ENST00000409140|SPATS2L	MULTI-SECPEP	A375_MHC_IP_R2	2	378.9395446777344	3	378.539799	1132.59757	-0.21311	-8.067E-05	0.087134	3.2984E-05	-0.12598	-4.7687E-05	378.5397915416844	23.173	0.60831	23.803	23.521	24.129	0.63014					34	11	4	0	0	0	0.019704	1	7397	7397		78.61	46.573	1	84258000			10148	9004	7133	7195	9922	9922					0.03657369715392633
EEVDSSVKKI	10	Unmodified	_EEVDSSVKKI_					0	0	0		ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L;nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	ENSG00000196141|ENST00000409140|SPATS2L	ENSG00000196141|ENST00000409140|SPATS2L	MULTI-SECPEP	A375_MHC_IP_R2	2	567.7049560546875	2	567.306061	1132.59757	-0.70476	-0.00039981	-0.23103	-0.00013106	-0.93579	-0.00053088	567.3058813212788	23.172	0.45742	23.802	23.572	24.029	0.63014					22	8	4	0	0	0	0.0002321	1	7407	7407		200.32	124.56	1	23133000			10149	9004	7133	7195	9923	9923					0.03657369715392633
EEVDVPIKLY	10	Unmodified	_EEVDVPIKLY_					0	0	0		EPHB2|p.K656Vfs*90|1|0.27|ENSG00000133216|chr1:22906787-22906788|AA/-|frameshift_variant;ENSG00000133216|ENST00000374630|EPHB2;nc|ENSG00000133216|P29323-3|EPHB2;nc|ENSG00000133216|P29323|EPHB2;ENSG00000154928|ENST00000398015|EPHB1	EPHB2|p.K656Vfs*90|1|0.27|ENSG00000133216|chr1:22906787-22906788|AA/-|frameshift_variant;ENSG00000154928|ENST00000398015|EPHB1	ENSG00000154928|ENST00000398015|EPHB1	MULTI-SECPEP	A375_MHC_IP_R1	1	603.2269287109375	2	602.826629	1203.63871	-0.28467	-0.00017161	1.2615	0.00076046	0.97682	0.00058886	602.8270294782805	93.58	0.45901	93.58	93.279	93.738	0					15	8	3	0	0	0	0.83327	1	34420	34420		36.506	32.562	1	1847400			10150	4494;6116	7134	7196	9924	9924					0.04503130754847007
EEVDVPIKLY	10	Unmodified	_EEVDVPIKLY_					0	0	0		EPHB2|p.K656Vfs*90|1|0.27|ENSG00000133216|chr1:22906787-22906788|AA/-|frameshift_variant;ENSG00000133216|ENST00000374630|EPHB2;nc|ENSG00000133216|P29323-3|EPHB2;nc|ENSG00000133216|P29323|EPHB2;ENSG00000154928|ENST00000398015|EPHB1	EPHB2|p.K656Vfs*90|1|0.27|ENSG00000133216|chr1:22906787-22906788|AA/-|frameshift_variant;ENSG00000154928|ENST00000398015|EPHB1	ENSG00000154928|ENST00000398015|EPHB1	MULTI-MATCH	A375_MHC_IP_R2	2		2	602.826629	1203.63871	-0.39497	-0.0002381	0.26047	0.00015702	-0.1345	-8.1079E-05	602.8269074009277	92.914	0.30165	93.653	93.495	93.797	0.73901	0.036338	-0.00069219	NaN	43.772	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2242000			10151	4494;6116	7134	7196							0.04503130754847007
EEVDYDVSPS	10	Unmodified	_EEVDYDVSPS_					0	0	0		nc|ENSG00000075651|Q13393-2|PLD1;ENSG00000075651|ENST00000351298|PLD1;nc|ENSG00000075651|Q13393-3|PLD1;nc|ENSG00000075651|Q13393-4|PLD1	nc|ENSG00000075651|Q13393-2|PLD1	nc|ENSG00000075651|Q13393-2|PLD1	MULTI-MSMS	A375_MHC_IP_R2	2	570.1376342773438	2	570.240583	1138.46661	-0.35322	-0.00020142	-1.4666	-0.00083631	-1.8198	-0.0010377	570.2396262473264	62.529	1.4196	63.272	63.079	64.499	0.74263					26	27	2	0	0	0	0.60556	1	23764	23764		20.454	7.9221	1	1703000			10152	1617	7135	7197	9925	9925					-0.09708065723316395
EEVEAKFKRY	10	Unmodified	_EEVEAKFKRY_					0	0	0		ENSG00000106554|ENST00000262570|CHCHD3	ENSG00000106554|ENST00000262570|CHCHD3	ENSG00000106554|ENST00000262570|CHCHD3	MULTI-MSMS	A375_MHC_IP_R1	1	433.9626159667969	3	433.562827	1297.66665	-0.42638	-0.00018486	0.23692	0.00010272	-0.18946	-8.2145E-05	433.5628102767753	23.813	0.66085	23.813	23.635	24.296	0					31	12	4	0	0	0	0.054029	2	6617	6617;6755		74.772	53.901	1	34134000			10153	2698	7136	7198	9926;9927	9926					0.02972453734969349
EEVEAKFKRY	10	Unmodified	_EEVEAKFKRY_					0	0	0		ENSG00000106554|ENST00000262570|CHCHD3	ENSG00000106554|ENST00000262570|CHCHD3	ENSG00000106554|ENST00000262570|CHCHD3	MULTI-MSMS	A375_MHC_IP_R2	2	433.9626770019531	3	433.562827	1297.66665	-0.59982	-0.00026006	0.17852	7.7402E-05	-0.42129	-0.00018266	433.56280069237005	23.006	0.8171	23.636	23.01	23.828	0.63014					31	15	4	0	0	0	0.024099	1	7301	7301		83.278	53.841	1	10726000			10154	2698	7136	7198	9928	9928					0.02972453734969349
EEVEAKFKRY	10	Unmodified	_EEVEAKFKRY_					0	0	0		ENSG00000106554|ENST00000262570|CHCHD3	ENSG00000106554|ENST00000262570|CHCHD3	ENSG00000106554|ENST00000262570|CHCHD3	MULTI-MSMS	A375_MHC_IP_R2	2	433.9625244140625	3	433.562827	1297.66665	-0.53455	-0.00023176	0.085876	3.7233E-05	-0.44868	-0.00019453	433.5628905988043	23.619	0.40611	24.249	24.079	24.485	0.63014					12	7	3	0	0	0	0.12159	1	7645	7645		59.013	40.292	1	9054300			10155	2698	7136	7198	9929	9929					0.02972453734969349
EEVEAKFKRY	10	Unmodified	_EEVEAKFKRY_					0	0	0		ENSG00000106554|ENST00000262570|CHCHD3	ENSG00000106554|ENST00000262570|CHCHD3	ENSG00000106554|ENST00000262570|CHCHD3	MULTI-SECPEP	A375_MHC_IP_R2	2	434.2967529296875	3	433.562827	1297.66665	-0.59307	-0.00025713	-0.24064	-0.00010433	-0.83372	-0.00036147	433.56274085253034	21.895	0.3579	22.514	22.285	22.643	0.61932					11	6	2	0	0	0	0.51228	1	6936	6936		42.835	28.617	1	3044400			10156	2698	7136	7198	9930	9930					0.02972453734969349
EEVEGQARRR	10	Unmodified	_EEVEGQARRR_					0	0	0			REV__ENST00000262158.6_1_18:46476520-46476862:-|nuORF	REV__ENST00000262158.6_1_18:46476520-46476862:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	615.6827392578125	2	615.320899	1228.62725	-0.10678	-6.5706E-05	-0.27311	-0.00016805	-0.37989	-0.00023375	615.3221528783987	107.39	0.6143	107.39	106.98	107.6	0					12	11	2	0	0	0	0.92957	1	39368	39368		10.074	2.1638	1	718000	+		10157	23198	7137	7199	9931	9931					0.022077465040638344
EEVEGQGF	8	Unmodified	_EEVEGQGF_					0	0	0		ENSG00000166340|ENST00000299427|TPP1;nc|ENSG00000166340|O14773-2|TPP1	ENSG00000166340|ENST00000299427|TPP1	ENSG00000166340|ENST00000299427|TPP1	MULTI-SECPEP	A375_MHC_IP_R1	1	448.09539794921875	2	447.695615	893.376677	0.031672	1.4179E-05	-0.30651	-0.00013722	-0.27483	-0.00012304	447.6954189845247	42.461	0.5563	42.461	42.183	42.739	0					14	10	2	0	0	0	0.48416	1	14713	14713		49.669	9.2203	1	2228200			10158	7060	7138	7200	9932	9932					-0.0742765054121719
EEVEGQGF	8	Unmodified	_EEVEGQGF_					0	0	0		ENSG00000166340|ENST00000299427|TPP1;nc|ENSG00000166340|O14773-2|TPP1	ENSG00000166340|ENST00000299427|TPP1	ENSG00000166340|ENST00000299427|TPP1	MULTI-SECPEP	A375_MHC_IP_R2	2	448.0951843261719	2	447.695615	893.376677	-0.3352	-0.00015007	-0.17023	-7.6212E-05	-0.50543	-0.00022628	447.6954669090684	41.755	0.61264	42.53	42.3	42.913	0.77451					18	11	2	0	0	0	0.73517	1	15550	15550		42.968	16.627	1	2284900			10159	7060	7138	7200	9933	9933					-0.0742765054121719
EEVEKSPRQWI	11	Unmodified	_EEVEKSPRQWI_					0	0	0			REV__ENST00000550479.1_1_12:104332030-104335334:+|nuORF	REV__ENST00000550479.1_1_12:104332030-104335334:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	467.9767761230469	3	467.577136	1399.70958	-0.86236	-0.00040322	0.070343	3.2891E-05	-0.79202	-0.00037033	467.57727384729446	49.162	0.86114	49.919	49.69	50.551	0.75737					38	16	3	0	0	0	0.73195	1	18475	18475		7.0371	1.1689	1	8205200	+		10160	20691	7139	7201	9934	9934					0.025712237923698922
EEVEKSPRQWI	11	Unmodified	_EEVEKSPRQWI_					0	0	0			REV__ENST00000550479.1_1_12:104332030-104335334:+|nuORF	REV__ENST00000550479.1_1_12:104332030-104335334:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	467.577136	1399.70958	-0.20281	-9.4829E-05	-0.20393	-9.5354E-05	-0.40674	-0.00019018	467.57707360401747	50.062	0.6658	50.062	49.793	50.459	0	0.071367	-0.00013085	NaN	7.0371	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6305000	+		10161	20691	7139	7201							0.025712237923698922
EEVELETLK	9	Unmodified	_EEVELETLK_					0	0	0			REV__ENST00000438322.1_1_9:94904300-94906792:+|nuORF	REV__ENST00000438322.1_1_9:94904300-94906792:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	546.6846923828125	2	545.287337	1088.56012	-0.23405	-0.00012763	0.7244	0.000395	0.49034	0.00026738	545.2880441228077	70.012	1.3723	70.012	69.427	70.8	0					79	26	5	0	0	0	0.4867	1	25256	25256		20.454	2.3186	1	21869000	+		10162	24781	7140	7202	9935	9935					0.019382784497565808
EEVELLLGPEP	11	Unmodified	_EEVELLLGPEP_					0	0	0			REV__ENST00000573523.5_1_17:4574736-4578861:-|nuORF	REV__ENST00000573523.5_1_17:4574736-4578861:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	613.2217407226562	2	612.821544	1223.62853	-0.33493	-0.00020525	0.71634	0.00043899	0.38141	0.00023374	612.8221145424992	74.631	0.60964	74.631	74.349	74.958	0					18	11	2	0	0	0	0.28117	1	27195	27195		56.177	21.775	1	1791000	+		10163	19269	7141	7203	9936	9936					0.025665230296226582
EEVELLLGPEP	11	Unmodified	_EEVELLLGPEP_					0	0	0			REV__ENST00000573523.5_1_17:4574736-4578861:-|nuORF	REV__ENST00000573523.5_1_17:4574736-4578861:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	613.2211303710938	2	612.821544	1223.62853	-0.52848	-0.00032387	0.52434	0.00032133	-0.0041397	-2.5369E-06	613.3235771735873	73.892	0.50905	74.63	74.348	74.857	0.73752					13	9	2	0	0	0	0.62518	1	28065	28065		41.84	12.758	1	2028000	+		10164	19269	7141	7203	9937	9937					0.025665230296226582
EEVENNKKWT	10	Unmodified	_EEVENNKKWT_					0	0	0		ENSG00000153347|ENST00000283357|FAM81B	ENSG00000153347|ENST00000283357|FAM81B	ENSG00000153347|ENST00000283357|FAM81B	MULTI-SECPEP	A375_MHC_IP_R1	1	426.61029052734375	3	426.210453	1275.60953	-0.36274	-0.0001546	0.65336	0.00027847	0.29063	0.00012387	426.2105068521149	32.6	0.60499	32.6	32.282	32.887	0					34	11	4	0	0	0	0.91516	1	10512	10512		13.519	13.519	1	10020000			10165	6028	7142	7204	9938	9938					-0.017250135414315082
EEVENNKKWT	10	Unmodified	_EEVENNKKWT_					0	0	0		ENSG00000153347|ENST00000283357|FAM81B	ENSG00000153347|ENST00000283357|FAM81B	ENSG00000153347|ENST00000283357|FAM81B	MULTI-MATCH	A375_MHC_IP_R2	2		3	426.210453	1275.60953	-0.1875	-7.9915E-05	0.59545	0.00025379	0.40795	0.00017387	426.21046244783207	32.016	0.66003	32.753	32.35	33.01	0.73691	0.076429	-3.1065E-05	NaN	13.519	39	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11602000			10166	6028	7142	7204							-0.017250135414315082
EEVEQGVKF	9	Unmodified	_EEVEQGVKF_					0	0	0		ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1663818359375	2	532.766571	1063.51859	-0.42293	-0.00022532	0.27763	0.00014791	-0.1453	-7.7409E-05	532.7667134570785	43.152	0.55948	43.152	42.841	43.4	0					20	10	2	0	0	0	0.013591	1	14938	14938		118.07	52.833	1	26905000			10167	7089	7143	7205	9939	9939					-0.010628575189002731
EEVEQGVKF	9	Unmodified	_EEVEQGVKF_					0	0	0		ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-SECPEP	A375_MHC_IP_R2	2	533.166259765625	2	532.766571	1063.51859	-0.64947	-0.00034602	-0.052162	-2.779E-05	-0.70163	-0.00037381	532.7664947307267	42.387	0.86765	43.159	42.553	43.421	0.7724					26	16	2	0	0	0	0.011066	1	15741	15741		137.42	69.343	1	27268000			10168	7089	7143	7205	9940	9940					-0.010628575189002731
EEVERAWAPKD	11	Unmodified	_EEVERAWAPKD_					0	0	0			REV__nc|ENSG00000141503|Q8N4C8-5|MINK1	REV__nc|ENSG00000141503|Q8N4C8-5|MINK1	MULTI-MSMS	A375_MHC_IP_R2	2	664.7164306640625	2	665.325316	1328.63608	-0.86919	-0.00057829	-1.1526	-0.00076683	-2.0218	-0.0013451	665.3244034367916	70.781	0.45605	71.515	71.2	71.656	0.73421					13	8	2	0	0	0	0.73239	1	26829	26829		12.241	6.0349	1	8234800	+		10169	19273	7144	7206	9941	9941					-0.015093246501237445
EEVESLNRKY	10	Unmodified	_EEVESLNRKY_					0	0	0		nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;ENSG00000143493|ENST00000366994|INTS7;ENST00000461212.5_1_1:212125793-212148678:-|nuORF	nc|ENSG00000143493|Q9NVH2-4|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	MULTI-MSMS	A375_MHC_IP_R1	1	423.2825012207031	3	422.882337	1265.62518	-0.053156	-2.2479E-05	0.2397	0.00010136	0.18654	7.8885E-05	422.8824080712683	24.928	0.50707	24.928	24.647	25.154	0					16	9	2	0	0	0	0.019617	1	7188	7188		85.764	56.327	1	16827000			10170	5400	7145	7207	9942	9942					0.00299272975621534
EEVESLNRKY	10	Unmodified	_EEVESLNRKY_					0	0	0		nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;ENSG00000143493|ENST00000366994|INTS7;ENST00000461212.5_1_1:212125793-212148678:-|nuORF	nc|ENSG00000143493|Q9NVH2-4|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	MULTI-MSMS	A375_MHC_IP_R1	1	634.2200317382812	2	633.819867	1265.62518	-0.67536	-0.00042806	0.68797	0.00043605	0.012607	7.9907E-06	633.8203083241292	24.928	0.30375	24.928	24.801	25.104	0					7	5	2	0	0	0	0.021084	1	7209	7209		107.1	55.47	1	5988300			10171	5400	7145	7207	9943	9943					0.00299272975621534
EEVESLNRKY	10	Unmodified	_EEVESLNRKY_					0	0	0		nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;ENSG00000143493|ENST00000366994|INTS7;ENST00000461212.5_1_1:212125793-212148678:-|nuORF	nc|ENSG00000143493|Q9NVH2-4|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	MULTI-MSMS	A375_MHC_IP_R2	2	423.2822265625	3	422.882337	1265.62518	-0.45894	-0.00019408	0.23314	9.8593E-05	-0.22579	-9.5484E-05	422.88239776932977	24.369	0.76219	25.013	24.602	25.364	0.64368					29	14	3	0	0	0	0.076247	1	8011	8011		68.76	44.959	1	8148000			10172	5400	7145	7207	9944	9944					0.00299272975621534
EEVEVLKEQ	9	Unmodified	_EEVEVLKEQ_					0	0	0		ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-5|TSC22D1;ENST00000496314.1_1_13:45008764-45009186:-|nuORF;nc|ENSG00000102804|Q15714-2|TSC22D1;nc|ENSG00000166925|Q9Y3Q8-2|TSC22D4;ENSG00000166925|ENST00000300181|TSC22D4;nc|ENSG00000102804|Q15714-3|TSC22D1;ENSG00000196428|ENST00000688009|TSC22D2;nc|ENSG00000196428|O75157|TSC22D2	ENSG00000102804|ENST00000458659|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	MULTI-SECPEP	A375_MHC_IP_R1	1	552.1846923828125	2	551.784961	1101.55537	-0.46073	-0.00025422	0.63633	0.00035112	0.1756	9.6896E-05	551.7852093944048	36.014	0.45687	36.014	35.727	36.184	0					17	8	3	0	0	0	0.042716	1	12005	12005		86.332	7.6038	1	3870900			10173	2394	7146	7208	9945	9945					0.008653943070157766
EEVEVLKEQ	9	Unmodified	_EEVEVLKEQ_					0	0	0		ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-5|TSC22D1;ENST00000496314.1_1_13:45008764-45009186:-|nuORF;nc|ENSG00000102804|Q15714-2|TSC22D1;nc|ENSG00000166925|Q9Y3Q8-2|TSC22D4;ENSG00000166925|ENST00000300181|TSC22D4;nc|ENSG00000102804|Q15714-3|TSC22D1;ENSG00000196428|ENST00000688009|TSC22D2;nc|ENSG00000196428|O75157|TSC22D2	ENSG00000102804|ENST00000458659|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1845092773438	2	551.784961	1101.55537	-1.0144	-0.0005597	1.1734	0.00064748	0.15908	8.7779E-05	551.7856643462509	35.275	0.80912	36.038	35.677	36.486	0.76338					20	15	2	0	0	0	0.03341	1	12806	12806		93.166	36.989	1	3541800			10174	2394	7146	7208	9946	9946					0.008653943070157766
EEVFKACVQK	10	Unmodified	_EEVFKACVQK_					0	0	0			REV__ENST00000532056.5_3_15:40886537-40901060:+|nuORF	REV__ENST00000532056.5_3_15:40886537-40901060:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	590.1611938476562	2	590.805174	1179.59579	-0.53071	-0.00031354	-3.3561	-0.0019828	-3.8868	-0.0022963	590.8029697197995	85.205	0.45645	85.205	84.955	85.412	0					14	8	2	0	0	0	0.8125	1	31260	31260		24.021	4.7636	1	2075700	+		10175	24396	7147	7209	9947	9947					0.013180374257672156
EEVFLIGKNF	10	Unmodified	_EEVFLIGKNF_					0	0	0		nc|ENSG00000102908|O94916|NFAT5;nc|ENSG00000102908|O94916-4|NFAT5;ENSG00000102908|ENST00000349945|NFAT5;nc|ENSG00000102908|O94916-2|NFAT5	nc|ENSG00000102908|O94916|NFAT5	nc|ENSG00000102908|O94916|NFAT5	MULTI-SECPEP	A375_MHC_IP_R1	1	597.6344604492188	2	598.321514	1194.62847	-0.33391	-0.00019978	0.39744	0.00023779	0.063529	3.8011E-05	598.3216069521344	97.878	0.6095	97.878	97.641	98.25	0					29	11	3	0	0	0	0.020775	1	35918	35918		96.367	40.19	1	10026000			10176	2401	7148	7210	9948	9948					0.038945678202935596
EEVFLIGKNF	10	Unmodified	_EEVFLIGKNF_					0	0	0		nc|ENSG00000102908|O94916|NFAT5;nc|ENSG00000102908|O94916-4|NFAT5;ENSG00000102908|ENST00000349945|NFAT5;nc|ENSG00000102908|O94916-2|NFAT5	nc|ENSG00000102908|O94916|NFAT5	nc|ENSG00000102908|O94916|NFAT5	MULTI-MSMS	A375_MHC_IP_R2	2	598.7208251953125	2	598.321514	1194.62847	-0.73886	-0.00044208	0.21068	0.00012606	-0.52818	-0.00031602	598.3217059570335	97.119	0.76225	97.875	97.519	98.281	0.75587					30	14	3	0	0	0	2.9886E-05	1	36818	36818		183.04	108.11	1	8543700			10177	2401	7148	7210	9949	9949					0.038945678202935596
EEVFNKQDL	9	Unmodified	_EEVFNKQDL_					0	0	0			REV__ENST00000509159.1_1_5:105752187-105752631:-|nuORF	REV__ENST00000509159.1_1_5:105752187-105752631:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	561.6951293945312	2	561.277303	1120.54005	0.10185	5.7163E-05	-0.93795	-0.00052645	-0.83611	-0.00046929	561.276843411078	44.943	0.55906	44.943	44.471	45.03	0					11	10	2	0	0	0	0.65246	1	15582	15582		6.7232	0	1	1564500	+		10178	25591	7149	7211	9950	9950					-0.015394724901852896
EEVFRITTSY	10	Unmodified	_EEVFRITTSY_					0	0	0			REV__CYP7B1|p.M457Wfs*3|1|0.47|ENSG00000172817|chr8:64596795-64596795|A/-|frameshift_variant	REV__CYP7B1|p.M457Wfs*3|1|0.47|ENSG00000172817|chr8:64596795-64596795|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	415.9430847167969	3	415.543432	1243.60847	0.037699	1.5666E-05	-0.79734	-0.00033133	-0.75964	-0.00031567	415.54251335917814	42.097	1.0724	42.87	42.247	43.32	0.77303					28	13	3	0	0	0	0.70027	1	15635	15635		12.175	3.1985	1	4401900	+		10179	15961	7150	7212	9951	9951					-0.0035922791032589885
EEVFRLAPFAT	11	Unmodified	_EEVFRLAPFAT_					0	0	0			REV__ENSG00000179409|ENST00000319004|GEMIN4	REV__ENSG00000179409|ENST00000319004|GEMIN4	MULTI-SECPEP	A375_MHC_IP_R2	2	427.9697265625	3	427.227556	1278.66084	-0.61604	-0.00026319	-2.3618	-0.001009	-2.9779	-0.0012722	427.2261871917075	25.997	0.25409	26.657	26.551	26.805	0.65992					6	4	2	0	0	0	0.96429	1	8700	8700		12.228	0	1	1191800	+		10180	21562	7151	7213	9952	9952					0.032653552232886796
EEVFRTKI	8	Unmodified	_EEVFRTKI_					0	0	0		ENSG00000185989|ENST00000334062|RASA3;nc|ENSG00000185989|Q14644-2|RASA3	ENSG00000185989|ENST00000334062|RASA3	ENSG00000185989|ENST00000334062|RASA3	MULTI-SECPEP	A375_MHC_IP_R1	1	510.99884033203125	2	511.287474	1020.5604	-0.52791	-0.00026992	-0.65059	-0.00033264	-1.1785	-0.00060255	511.2871913683812	34.388	0.25301	34.388	34.203	34.456	0					7	4	2	0	0	0	0.92636	1	11294	11294		16.942	0	1	662130			10181	8714	7152	7214	9953	9953					0.05093742960275449
EEVGAWVQY	9	Unmodified	_EEVGAWVQY_					0	0	0		ENSG00000143919|ENST00000378494|CAMKMT;nc|ENSG00000143919|Q7Z624-2|CAMKMT	ENSG00000143919|ENST00000378494|CAMKMT	ENSG00000143919|ENST00000378494|CAMKMT	MULTI-MSMS	A375_MHC_IP_R2	2	541.153564453125	2	540.753464	1079.49238	-0.74692	-0.0004039	1.327	0.00071757	0.58005	0.00031367	540.7540965231029	90.094	0.92043	90.826	90.236	91.157	0.7318					25	17	2	0	0	0	0.12592	2	34291	34291;34304		46.021	24.274	1	2033400			10182	5446	7153	7215	9954;9955	9954					-0.044191266903681026
EEVGDFIQRY	10	Unmodified	_EEVGDFIQRY_					0	0	0		ENSG00000131778|ENST00000369258|CHD1L;nc|ENSG00000131778|Q86WJ1-4|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L	ENSG00000131778|ENST00000369258|CHD1L	ENSG00000131778|ENST00000369258|CHD1L	MULTI-MSMS	A375_MHC_IP_R1	1	629.3590698242188	2	628.30131	1254.58807	-0.47384	-0.00029771	-0.088108	-5.5358E-05	-0.56195	-0.00035307	628.3013149198786	72.557	0.60953	72.557	72.22	72.83	0					35	11	4	0	0	0	0.57505	1	26491	26491		22.736	11.912	1	11068000			10183	4350	7154	7216	9956	9956					-0.02904398570126432
EEVGDFIQRY	10	Unmodified	_EEVGDFIQRY_					0	0	0		ENSG00000131778|ENST00000369258|CHD1L;nc|ENSG00000131778|Q86WJ1-4|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L	ENSG00000131778|ENST00000369258|CHD1L	ENSG00000131778|ENST00000369258|CHD1L	MULTI-SECPEP	A375_MHC_IP_R2	2	628.7008666992188	2	628.30131	1254.58807	-1.086	-0.00068236	-0.22145	-0.00013914	-1.3075	-0.0008215	628.3012411162728	71.904	0.55709	72.638	72.364	72.921	0.73421					28	10	3	0	0	0	0.033119	1	27252	27252		99.755	63.628	1	11440000			10184	4350	7154	7216	9957	9957					-0.02904398570126432
EEVGPSDHF	9	Unmodified	_EEVGPSDHF_					0	0	0		ENSG00000185670|ENST00000394807|ZBTB3;nc|ENSG00000185670|Q9H5J0|ZBTB3	ENSG00000185670|ENST00000394807|ZBTB3	ENSG00000185670|ENST00000394807|ZBTB3	MULTI-MSMS	A375_MHC_IP_R2	2	509.2201843261719	2	508.719621	1015.42469	-0.94767	-0.0004821	0.51969	0.00026438	-0.42798	-0.00021772	508.71979529432735	35.627	0.40458	36.39	36.183	36.587	0.76338					11	7	2	0	0	0	0.32899	1	12969	12969		28.487	13.905	1	907940			10185	8683	7155	7217	9958	9958					-0.08240576621187756
EEVGQAVHF	9	Unmodified	_EEVGQAVHF_					0	0	0		nc|ENSG00000187535|Q96RY7-2|IFT140;ENSG00000187535|ENST00000426508|IFT140;ENST00000565298.5_1_16:1574507-1576156:-|nuORF	nc|ENSG00000187535|Q96RY7-2|IFT140	nc|ENSG00000187535|Q96RY7-2|IFT140	MULTI-SECPEP	A375_MHC_IP_R1	1	508.6454772949219	2	508.245806	1014.47706	-0.30337	-0.00015419	-0.51021	-0.00025931	-0.81358	-0.0004135	508.245448429739	50.042	0.51196	50.042	49.743	50.254	0					15	9	2	0	0	0	0.20094	1	17740	17740		44.407	26.272	1	2067800			10186	8832	7156	7218	9959	9959					-0.029599934875705003
EEVGSAGAAY	10	Unmodified	_EEVGSAGAAY_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP;ENST00000496607.5_1_21:47655184-47686088:-|nuORF;ENST00000486937.5_1_21:47666536-47687014:-|nuORF	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	A375_MHC_IP_R1	1	477.61407470703125	2	477.214172	952.413791	-0.56736	-0.00027075	0.29933	0.00014284	-0.26803	-0.00012791	477.2142912462929	34.394	0.50379	34.394	34.154	34.657	0					19	9	3	0	0	0	0.11068	1	11333	11333		61.357	25.23	1	5173500			10187	6414	7157	7219	9960	9960					-0.06431978995476584
EEVGSAGAAY	10	Unmodified	_EEVGSAGAAY_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP;ENST00000496607.5_1_21:47655184-47686088:-|nuORF;ENST00000486937.5_1_21:47666536-47687014:-|nuORF	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	A375_MHC_IP_R2	2	477.61395263671875	2	477.214172	952.413791	-1.066	-0.00050869	0.55865	0.0002666	-0.5073	-0.00024209	477.2144101891617	33.778	0.45505	34.531	34.298	34.753	0.75225					20	8	3	0	0	0	0.0042327	1	12131	12131		100.37	52.026	1	5577500			10188	6414	7157	7219	9961	9961					-0.06431978995476584
EEVGVEHLL	9	Unmodified	_EEVGVEHLL_					0	0	0		ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	MULTI-MSMS	A375_MHC_IP_R1	1	513.1690673828125	2	512.769114	1023.52368	-0.25623	-0.00013139	-0.18647	-9.5616E-05	-0.4427	-0.000227	512.769014198837	71.79	0.65334	71.79	71.516	72.169	0					34	12	4	0	0	0	0.00081081	2	26079	26079;26081		196.94	87.311	1	19415000			10189	2412	7158	7220	9962;9963	9962					0.01285446343717922
EEVGVEHLL	9	Unmodified	_EEVGVEHLL_					0	0	0		ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	MULTI-MSMS	A375_MHC_IP_R2	2	512.5084228515625	2	512.769114	1023.52368	-0.88705	-0.00045485	0.32496	0.00016663	-0.56208	-0.00028822	512.7691356334599	71.008	0.81104	71.743	71.503	72.314	0.73421					33	15	4	0	0	0	0.0084242	2	26969	26906;26969		170.55	81.124	1	23306000			10190	2412	7158	7220	9964;9965	9965					0.01285446343717922
EEVGYAIRF	9	Unmodified	_EEVGYAIRF_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;ENST00000569935.1_1_16:72137048-72138114:+|nuORF	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-SECPEP	A375_MHC_IP_R2	2	542.6764526367188	2	542.277106	1082.53966	-0.83138	-0.00045084	-0.8156	-0.00044228	-1.647	-0.00089312	542.2767284409302	77.054	0.60978	77.797	77.504	78.113	0.74293					19	11	2	0	0	0	0.60917	1	29239	29239		25.399	5.9603	1	4462600			10191	5186	7159	7221	9966	9966					0.0016915258061089844
EEVHDLERKY	10	Unmodified	_EEVHDLERKY_					0	0	0		ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;nc|ENSG00000205531|Q99733-2|NAP1L4;ENSG00000205531|ENST00000380542|NAP1L4	ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000205531|Q99733-2|NAP1L4	ENSG00000187109|ENST00000618691|NAP1L1	MULTI-MSMS	A375_MHC_IP_R1	1	440.28582763671875	3	439.88597	1316.63608	0.23589	0.00010376	-0.2673	-0.00011758	-0.031409	-1.3816E-05	439.88586217238833	22.19	0.40658	22.19	22.013	22.419	0					27	7	5	0	0	0	3.2741E-05	1	5912	5912		175.66	131.27	1	76647000			10192	8806;9516	7160	7222	9967	9967					-0.009573246500849564
EEVHDLERKY	10	Unmodified	_EEVHDLERKY_					0	0	0		ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;nc|ENSG00000205531|Q99733-2|NAP1L4;ENSG00000205531|ENST00000380542|NAP1L4	ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000205531|Q99733-2|NAP1L4	ENSG00000187109|ENST00000618691|NAP1L1	MULTI-MSMS	A375_MHC_IP_R1	1	440.2859191894531	3	439.88597	1316.63608	-0.16938	-7.4508E-05	-0.27185	-0.00011958	-0.44123	-0.00019409	439.8859816884399	23.252	1.0123	23.252	22.419	23.432	0					86	19	6	0	0	0	0.0038974	2	6375	6128;6375		99.864	65.642	1	2802700000			10193	8806;9516	7160	7222	9968;9969	9969					-0.009573246500849564
EEVHDLERKY	10	Unmodified	_EEVHDLERKY_					0	0	0		ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;nc|ENSG00000205531|Q99733-2|NAP1L4;ENSG00000205531|ENST00000380542|NAP1L4	ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000205531|Q99733-2|NAP1L4	ENSG00000187109|ENST00000618691|NAP1L1	MULTI-MSMS	A375_MHC_IP_R1	1	659.7252197265625	2	659.325316	1316.63608	-0.55651	-0.00036692	-0.1488	-9.8109E-05	-0.70531	-0.00046503	659.3252266292798	23.252	0.55804	23.252	22.873	23.432	0					40	10	5	0	0	0	3.3044E-05	1	6255	6255		179.28	146.5	1	200010000			10194	8806;9516	7160	7222	9970	9970					-0.009573246500849564
EEVHDLERKY	10	Unmodified	_EEVHDLERKY_					0	0	0		ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;nc|ENSG00000205531|Q99733-2|NAP1L4;ENSG00000205531|ENST00000380542|NAP1L4	ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000205531|Q99733-2|NAP1L4	ENSG00000187109|ENST00000618691|NAP1L1	MULTI-MSMS	A375_MHC_IP_R1	1	659.724853515625	2	659.325316	1316.63608	-0.7947	-0.00052397	0.032929	2.1711E-05	-0.76177	-0.00050226	659.3253163348704	23.612	0.45756	23.612	23.432	23.889	0					23	8	4	0	0	0	3.9559E-07	1	6522	6522		220.1	163.92	1	64782000			10195	8806;9516	7160	7222	9971	9971					-0.009573246500849564
EEVHDLERKY	10	Unmodified	_EEVHDLERKY_					0	0	0		ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;nc|ENSG00000205531|Q99733-2|NAP1L4;ENSG00000205531|ENST00000380542|NAP1L4	ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000205531|Q99733-2|NAP1L4	ENSG00000187109|ENST00000618691|NAP1L1	MULTI-MSMS	A375_MHC_IP_R1	1	440.285888671875	3	439.88597	1316.63608	-0.40718	-0.00017911	-0.14288	-6.2852E-05	-0.55007	-0.00024197	439.8860178329078	23.61	1.5212	23.61	23.432	24.953	0					91	29	6	0	0	0	0.086529	2	6642	6642;6946		66.55	43.775	1	972780000			10196	8806;9516	7160	7222	9972;9973	9972					-0.009573246500849564
EEVHDLERKY	10	Unmodified	_EEVHDLERKY_					0	0	0		ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;nc|ENSG00000205531|Q99733-2|NAP1L4;ENSG00000205531|ENST00000380542|NAP1L4	ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000205531|Q99733-2|NAP1L4	ENSG00000187109|ENST00000618691|NAP1L1	MULTI-MSMS	A375_MHC_IP_R2	2	440.6201477050781	3	439.88597	1316.63608	-0.65961	-0.00029015	-0.36786	-0.00016182	-1.0275	-0.00045197	439.8858864334763	21.334	1.5772	21.953	21.371	22.948	0.61932					120	30	7	0	0	0	0.0038974	2	6565	6565;6790		99.864	71.631	1	2062699999.9999998			10197	8806;9516	7160	7222	9974;9975	9974					-0.009573246500849564
EEVHDLERKY	10	Unmodified	_EEVHDLERKY_					0	0	0		ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;nc|ENSG00000205531|Q99733-2|NAP1L4;ENSG00000205531|ENST00000380542|NAP1L4	ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000205531|Q99733-2|NAP1L4	ENSG00000187109|ENST00000618691|NAP1L1	MULTI-MSMS	A375_MHC_IP_R2	2	440.2857971191406	3	439.88597	1316.63608	-0.6471	-0.00028465	-0.20227	-8.8975E-05	-0.84937	-0.00037363	439.88600784246955	23.223	2.4443	23.853	22.551	24.996	0.63014					134	47	6	0	0	0	0.11261	2	7003	7003;7220		60.943	31.023	1	977110000			10198	8806;9516	7160	7222	9976;9977	9976					-0.009573246500849564
EEVHDLERKY	10	Unmodified	_EEVHDLERKY_					0	0	0		ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;nc|ENSG00000205531|Q99733-2|NAP1L4;ENSG00000205531|ENST00000380542|NAP1L4	ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000205531|Q99733-2|NAP1L4	ENSG00000187109|ENST00000618691|NAP1L1	MULTI-MSMS	A375_MHC_IP_R2	2	659.7252197265625	2	659.325316	1316.63608	-1.2318	-0.00081213	0.034401	2.2682E-05	-1.1974	-0.00078945	659.3253665801466	23.223	0.45742	23.853	23.572	24.029	0.63014					23	8	4	0	0	0	3.3044E-05	1	7423	7423		205.91	158.16	1	55494000			10199	8806;9516	7160	7222	9978	9978					-0.009573246500849564
EEVHDLERKY	10	Unmodified	_EEVHDLERKY_					0	0	0		ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;nc|ENSG00000205531|Q99733-2|NAP1L4;ENSG00000205531|ENST00000380542|NAP1L4	ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000205531|Q99733-2|NAP1L4	ENSG00000187109|ENST00000618691|NAP1L1	MULTI-SECPEP	A375_MHC_IP_R2	2	659.7247924804688	2	659.325316	1316.63608	-1.2427	-0.00081937	-0.6838	-0.00045085	-1.9265	-0.0012702	659.3252400207604	21.335	0.96513	21.954	21.575	22.541	0.61932					53	18	5	0	0	0	0.020754	1	6633	6633		121.35	86.414	1	129640000			10200	8806;9516	7160	7222	9979	9979					-0.009573246500849564
EEVHKHSTVV	10	Unmodified	_EEVHKHSTVV_					0	0	0		ENSG00000265107|ENST00000579774|GJA5	ENSG00000265107|ENST00000579774|GJA5	ENSG00000265107|ENST00000579774|GJA5	MSMS	A375_MHC_IP_R2	2	582.6674194335938	2	582.80402	1163.59349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.41	1	103.18	102.68	103.68	0.76428								0	0	0	0.15283	1	38806	38806		11.64	0	1				10201	9955	7161	7223	9980	9980					0.018233250123103062
EEVIEDWY	8	Unmodified	_EEVIEDWY_					0	0	0		ENSG00000137161|ENST00000372836|CNPY3	ENSG00000137161|ENST00000372836|CNPY3	ENSG00000137161|ENST00000372836|CNPY3	MSMS	A375_MHC_IP_R2	2	541.692138671875	2	541.73748	1081.46041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.081	1	77.824	77.324	78.324	0.74293								0	0	0	0.16876	1	29269	29269		20.871	3.9289	1				10202	4864	7162	7224	9981	9981					-0.07706539164178139
EEVIFPNNF	9	Unmodified	_EEVIFPNNF_					0	0	0		ENSG00000080839|ENST00000373664|RBL1;nc|ENSG00000080839|P28749-2|RBL1	ENSG00000080839|ENST00000373664|RBL1	ENSG00000080839|ENST00000373664|RBL1	MULTI-SECPEP	A375_MHC_IP_R2	2	554.02734375	2	554.769114	1107.52368	-0.58032	-0.00032194	0.13181	7.3125E-05	-0.44851	-0.00024882	554.7688971257409	111.81	0.46024	112.53	112.36	112.82	0.72459					10	8	2	0	0	0	0.67483	1	42187	42187		14.838	0.93222	1	1013500			10203	1723	7163	7225	9982	9982					-0.02578553656303484
EEVIKWTKF	9	Unmodified	_EEVIKWTKF_					0	0	0		ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	A375_MHC_IP_R1	1	394.61968994140625	3	393.88513	1178.63356	0.00024471	9.6387E-08	0.24706	9.7314E-05	0.24731	9.7411E-05	393.88514655957147	64.469	0.65993	64.469	64.191	64.851	0					26	12	3	0	0	0	0.46465	1	23345	23345		15.739	12.152	1	1852200			10204	4293	7164	7226	9983	9983					0.05138871682856916
EEVIKWTKF	9	Unmodified	_EEVIKWTKF_					0	0	0		ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-SECPEP	A375_MHC_IP_R1	1	590.72412109375	2	590.324057	1178.63356	-0.35873	-0.00021177	0.11877	7.0112E-05	-0.23996	-0.00014166	590.8262270841876	64.498	0.35536	64.498	64.242	64.597	0					12	6	3	0	0	0	0.39266	1	23323	23323		49.527	29.074	1	1326100			10205	4293	7164	7226	9984	9984					0.05138871682856916
EEVIKWTKF	9	Unmodified	_EEVIKWTKF_					0	0	0		ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-SECPEP	A375_MHC_IP_R2	2	394.2850036621094	3	393.88513	1178.63356	-0.10841	-4.2702E-05	-0.25202	-9.9267E-05	-0.36043	-0.00014197	393.88502677053583	63.632	0.61038	64.372	63.987	64.597	0.74022					22	11	3	0	0	0	0.72222	1	24117	24117		14.957	14.957	1	1895500			10206	4293	7164	7226	9985	9985					0.05138871682856916
EEVIKWTKF	9	Unmodified	_EEVIKWTKF_					0	0	0		ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MATCH	A375_MHC_IP_R2	2		2	590.324057	1178.63356	-0.50619	-0.00029882	-0.2029	-0.00011978	-0.70909	-0.00041859	590.3237555623328	63.578	0.30568	64.318	64.191	64.496	0.74022	-0.08992	-0.00010378	NaN	80.676	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1321000			10207	4293	7164	7226							0.05138871682856916
EEVITEEKPEE	11	Unmodified	_EEVITEEKPEE_					0	0	0			REV__tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	REV__tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	666.7141723632812	2	666.31428	1330.61401	-0.63948	-0.00042609	1.4377	0.00095799	0.79827	0.0005319	666.3150914914862	23.252	0.45645	23.252	22.924	23.381	0					17	8	3	0	0	0	0.62223	1	6349	6349		21.59	0	1	10884000	+		10208	28600	7165	7227	9986	9986					-0.0380759390914136
EEVITEEKPEE	11	Unmodified	_EEVITEEKPEE_					0	0	0			REV__tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	REV__tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	666.7135009765625	2	666.31428	1330.61401	-1.1507	-0.00076674	1.261	0.00084022	0.11028	7.348E-05	666.3148889678224	21.308	0.66023	21.927	21.676	22.336	0.61932					27	12	3	0	0	0	0.54969	1	6698	6698		27.223	0	1	10137000	+		10209	28600	7165	7227	9987	9987					-0.0380759390914136
EEVKEEVKKF	10	Unmodified	_EEVKEEVKKF_					0	0	0		nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46;ENST00000509255.1_1_5:134109490-134113463:+|nuORF	nc|ENSG00000145833|Q7L014|DDX46	nc|ENSG00000145833|Q7L014|DDX46	MULTI-MSMS	A375_MHC_IP_R1	1	422.630859375	3	422.230966	1263.67107	0.31091	0.00013127	-0.33406	-0.00014105	-0.023157	-9.7777E-06	422.2307608241642	21.988	0.55875	21.988	21.606	22.164	0					32	10	5	0	0	0	1.4138E-05	1	5834	5834		157.28	109.21	1	56494000			10210	5586	7166	7228	9988	9988					0.04977918157851491
EEVKEEVKKF	10	Unmodified	_EEVKEEVKKF_					0	0	0		nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46;ENST00000509255.1_1_5:134109490-134113463:+|nuORF	nc|ENSG00000145833|Q7L014|DDX46	nc|ENSG00000145833|Q7L014|DDX46	MULTI-MSMS	A375_MHC_IP_R1	1	633.2423095703125	2	632.84281	1263.67107	-0.32728	-0.00020712	-0.44817	-0.00028362	-0.77545	-0.00049074	632.8425336640408	21.988	0.25278	21.988	21.86	22.113	0					11	4	3	0	0	0	0.085909	1	5858	5858		66.683	47.321	1	3098200			10211	5586	7166	7228	9989	9989					0.04977918157851491
EEVKEEVKKF	10	Unmodified	_EEVKEEVKKF_					0	0	0		nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46;ENST00000509255.1_1_5:134109490-134113463:+|nuORF	nc|ENSG00000145833|Q7L014|DDX46	nc|ENSG00000145833|Q7L014|DDX46	MULTI-MSMS	A375_MHC_IP_R1	1	422.6310729980469	3	422.230966	1263.67107	-0.24697	-0.00010428	0.3926	0.00016577	0.14563	6.1489E-05	422.23104126478626	23.406	0.40838	23.406	23.227	23.635	0					14	7	3	0	0	0	0.0070192	1	6437	6437		107.51	66.167	1	15028000			10212	5586	7166	7228	9990	9990					0.04977918157851491
EEVKEEVKKF	10	Unmodified	_EEVKEEVKKF_					0	0	0		nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46;ENST00000509255.1_1_5:134109490-134113463:+|nuORF	nc|ENSG00000145833|Q7L014|DDX46	nc|ENSG00000145833|Q7L014|DDX46	MULTI-MSMS	A375_MHC_IP_R2	2	422.6308898925781	3	422.230966	1263.67107	-0.4548	-0.00019203	0.24692	0.00010426	-0.20788	-8.7772E-05	422.23102846851344	20.543	1.014	21.153	20.855	21.869	0.61029					63	19	4	0	0	0	0.011121	1	6595	6595		97.284	58.071	1	14876000			10213	5586	7166	7228	9991	9991					0.04977918157851491
EEVKEEVKKF	10	Unmodified	_EEVKEEVKKF_					0	0	0		nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46;ENST00000509255.1_1_5:134109490-134113463:+|nuORF	nc|ENSG00000145833|Q7L014|DDX46	nc|ENSG00000145833|Q7L014|DDX46	MULTI-MSMS	A375_MHC_IP_R2	2	422.6305847167969	3	422.230966	1263.67107	-0.47134	-0.00019901	0.14586	6.1587E-05	-0.32548	-0.00013743	422.23102424813123	22.967	0.45927	23.597	23.368	23.828	0.63014					13	8	2	0	0	0	0.00093258	1	7343	7343		119.6	66.133	1	12192000			10214	5586	7166	7228	9992	9992					0.04977918157851491
EEVKHVDFY	9	Unmodified	_EEVKHVDFY_					0	0	0		ENST00000485936.5_1_20:25203457-25206230:+|nuORF;ENST00000471478.1_1_20:25196340-25204798:+|nuORF;nc|ENSG00000197586|O75354-2|ENTPD6;nc|ENSG00000197586|O75354-3|ENTPD6;ENSG00000197586|ENST00000376652|ENTPD6	ENST00000485936.5_1_20:25203457-25206230:+|nuORF	ENST00000485936.5_1_20:25203457-25206230:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	583.6796264648438	2	583.279846	1164.54514	-0.56468	-0.00032937	0.24237	0.00014137	-0.32232	-0.000188	583.2799757491812	35.917	0.45926	36.68	36.486	36.946	0.76338					19	8	3	0	0	0	0.027818	1	13094	13094		76.825	42.423	1	4568300			10215	9174	7167	7229	9993	9993					-0.03055168627565763
EEVKHVDFY	9	Unmodified	_EEVKHVDFY_					0	0	0		ENST00000485936.5_1_20:25203457-25206230:+|nuORF;ENST00000471478.1_1_20:25196340-25204798:+|nuORF;nc|ENSG00000197586|O75354-2|ENTPD6;nc|ENSG00000197586|O75354-3|ENTPD6;ENSG00000197586|ENST00000376652|ENTPD6	ENST00000485936.5_1_20:25203457-25206230:+|nuORF	ENST00000485936.5_1_20:25203457-25206230:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	583.279846	1164.54514	-0.528	-0.00030797	-0.085667	-4.9968E-05	-0.61367	-0.00035794	583.2796325114327	36.745	0.50624	36.745	36.389	36.895	0	0.032453	-0.00015767	NaN	76.825	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3597300			10216	9174	7167	7229							-0.03055168627565763
EEVKIEEEQ	9	Unmodified	_EEVKIEEEQ_					0	0	0			REV__nc|ENSG00000118307|Q6TDU7-3|DNAI7	REV__nc|ENSG00000118307|Q6TDU7-3|DNAI7	MULTI-MSMS	A375_MHC_IP_R1	1	379.10028076171875	3	378.183793	1131.52955	0.58843	0.00022253	0.62358	0.00023583	1.212	0.00045836	378.1840911067035	21.458	0.96487	21.458	21.148	22.113	0					58	18	6	0	0	0	0.64808	1	5557	5557		7.609	0	1	374080000	+		10217	18035	7168	7230	9994	9994					-0.030954999352843515
EEVKKDELE	9	Unmodified	_EEVKKDELE_					0	0	0			REV__nc|ENSG00000135241|Q9NP80-3|PNPLA8	REV__nc|ENSG00000135241|Q9NP80-3|PNPLA8	MULTI-SECPEP	A375_MHC_IP_R2	2	559.7353515625	2	559.782418	1117.55028	-1.0907	-0.00061053	1.52	0.0008509	0.42939	0.00024037	559.7832460436232	25	0.30581	25.644	25.516	25.822	0.64368					7	5	2	0	0	0	0.73363	1	8349	8349		15.847	1.0089	1	1171400	+		10218	18833	7169	7231	9995	9995					-0.0037890955561579176
EEVKKENEPP	10	Unmodified	_EEVKKENEPP_					0	0	0			REV__nc|ENSG00000171681|Q6VMQ6-5|ATF7IP	REV__nc|ENSG00000171681|Q6VMQ6-5|ATF7IP	MULTI-MSMS	A375_MHC_IP_R2	2	600.6990966796875	2	599.801143	1197.58773	-0.99692	-0.00059795	-0.42285	-0.00025362	-1.4198	-0.00085158	599.8012807463369	29.811	0.91062	30.51	29.981	30.892	0.69872					43	17	3	0	0	0	0.66857	1	10349	10349		18.146	0	1	10501000	+		10219	21087	7170	7232	9996	9996					-0.003158182899824169
EEVKKKVCR	9	Unmodified	_EEVKKKVCR_					0	0	0		KCNH4|p.E878K|1|0.42|ENSG00000089558|chr17:42162274-42162274|C/T|missense_variant	KCNH4|p.E878K|1|0.42|ENSG00000089558|chr17:42162274-42162274|C/T|missense_variant	KCNH4|p.E878K|1|0.42|ENSG00000089558|chr17:42162274-42162274|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	1119.2579345703125	1	1118.63504	1117.62776	0.58879	0.00065864	-2.2795	-0.00255	-1.6908	-0.0018913	1119.6334171664926	113.92	0.91702	113.92	113.4	114.31	0					23	17	3	0	0	0	0.78348	1	41822	41822		7.9102	0.62092	1	5258400			10220	14197	7171	7233	9997	9997					0.07365449899589294
EEVKLIKKM	9	Oxidation (M)	_EEVKLIKKM(Oxidation (M))_		EEVKLIKKM(1)		EEVKLIKKM(80)	0	0	1		ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	MULTI-MSMS	A375_MHC_IP_R1	1	567.359375	2	567.333567	1132.65258	-0.5518	-0.00031306	-2.1181	-0.0012017	-2.6699	-0.0015147	567.331659358835	19.263	0.19003	19.263	19.23	19.42	0					6	4	2	0	0	0	0.024574	1	4708	4708		79.596	48.96	1	17896000			10221	1854	7172	7234	9998	9998		66			0.09156084982282664
EEVKLIKKM	9	Oxidation (M)	_EEVKLIKKM(Oxidation (M))_		EEVKLIKKM(1)		EEVKLIKKM(44)	0	0	1		ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	MULTI-MSMS	A375_MHC_IP_R1	1	378.95831298828125	3	378.558137	1132.65258	0.15133	5.7285E-05	0.20293	7.6821E-05	0.35426	0.00013411	378.55820655294804	19.293	0.23279	19.293	19.238	19.471	0					12	4	4	0	0	0	0.13845	1	4728	4728		43.772	32.278	1	155310000			10222	1854	7172	7234	9999	9999		66			0.09156084982282664
EEVKLIKKM	9	Oxidation (M)	_EEVKLIKKM(Oxidation (M))_		EEVKLIKKM(1)		EEVKLIKKM(63)	0	0	1		ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	MULTI-MSMS	A375_MHC_IP_R1	1	378.58819580078125	3	378.558137	1132.65258	0.1147	4.3421E-05	0.31433	0.00011899	0.42903	0.00016241	378.5582219583131	25.841	0.40404	25.841	25.714	26.118	0					17	7	3	0	0	0	0.052747	1	7612	7612		63.227	45.785	1	19098000			10223	1854	7172	7234	10000	10000		66			0.09156084982282664
EEVKLIKKM	9	Oxidation (M)	_EEVKLIKKM(Oxidation (M))_		EEVKLIKKM(1)		EEVKLIKKM(58)	0	0	1		ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	MULTI-SECPEP	A375_MHC_IP_R1	1	567.7332153320312	2	567.333567	1132.65258	-0.13481	-7.6482E-05	-0.26901	-0.00015262	-0.40382	-0.0002291	567.33316783398	21.295	0.50739	21.295	21.048	21.555	0					14	9	2	0	0	0	0.20451	1	5583	5583		57.722	33.701	1	1999200			10224	1854	7172	7234	10001	10001		66			0.09156084982282664
EEVKLIKKM	9	Oxidation (M)	_EEVKLIKKM(Oxidation (M))_		EEVKLIKKM(1)		EEVKLIKKM(55)	0	0	1		ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	MSMS	A375_MHC_IP_R2	2	378.5953674316406	3	378.558137	1132.65258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.04	1	25.683	25.183	26.183	0.64368								0	0	0	0.044298	1	8318	8318		55.235	30.353	1				10225	1854	7172	7234	10002	10002		66			0.09156084982282664
EEVKLIKKM	9	Oxidation (M)	_EEVKLIKKM(Oxidation (M))_		EEVKLIKKM(1)		EEVKLIKKM(50)	0	0	1		ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	MULTI-SECPEP	A375_MHC_IP_R2	2	567.1582641601562	2	567.333567	1132.65258	-0.71053	-0.00040311	-0.068969	-3.9128E-05	-0.7795	-0.00044224	567.3337959458081	20.869	0.50637	21.479	21.262	21.768	0.61029					14	9	2	0	0	0	0.20451	1	6529	6529		49.554	25.534	1	994100			10226	1854	7172	7234	10003	10003		66			0.09156084982282664
EEVKLIKKM	9	Oxidation (M)	_EEVKLIKKM(Oxidation (M))_					0	0	1		ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	MULTI-MATCH	A375_MHC_IP_R2	2		3	378.558137	1132.65258	-0.14343	-5.4296E-05	0.033432	1.2656E-05	-0.11	-4.164E-05	378.55811956172715	18.855	0.060436	19.458	19.423	19.483	0.60308	0.082863	-0.00015837	NaN	43.772	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184880000			10227	1854	7172	7234				66			0.09156084982282664
EEVKLIKKM	9	Unmodified	_EEVKLIKKM_					0	0	0		ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	MULTI-MSMS	A375_MHC_IP_R1	1	373.62652587890625	3	373.226499	1116.65767	0.11368	4.2429E-05	0.19329	7.2142E-05	0.30698	0.00011457	373.2265753318977	25.841	1.0156	25.841	25.408	26.423	0					48	19	4	0	0	0	0.0028027	1	7593	7593		114.19	48.713	1	123070000			10228	1854	7172	7235	10004	10004					0.10400388844914232
EEVKLIKKM	9	Unmodified	_EEVKLIKKM_					0	0	0		ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	MULTI-SECPEP	A375_MHC_IP_R1	1	559.73583984375	2	559.33611	1116.65767	-0.72284	-0.00040431	0.13517	7.5608E-05	-0.58766	-0.0003287	559.3361768250047	25.841	0.45462	25.841	25.664	26.118	0					18	8	3	0	0	0	0.011418	1	7614	7614		125.04	58.581	1	13967000			10229	1854	7172	7235	10005	10005					0.10400388844914232
EEVKLIKKM	9	Unmodified	_EEVKLIKKM_					0	0	0		ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	MULTI-MSMS	A375_MHC_IP_R2	2	373.9180603027344	3	373.226499	1116.65767	-0.020705	-7.7275E-06	-0.35845	-0.00013378	-0.37916	-0.00014151	373.2263625883446	25.1	0.81346	25.743	25.364	26.178	0.64368					40	15	4	0	0	0	0.22528	1	8426	8426		27.223	17.073	1	113140000			10230	1854	7172	7235	10006	10006					0.10400388844914232
EEVKLIKKM	9	Unmodified	_EEVKLIKKM_					0	0	0		ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	MULTI-SECPEP	A375_MHC_IP_R2	2	559.7353515625	2	559.33611	1116.65767	-1.1055	-0.00061836	-0.16599	-9.2846E-05	-1.2715	-0.0007112	559.3360732964966	25.084	0.25381	25.728	25.568	25.822	0.64368					14	4	4	0	0	0	0.011418	1	8349	8349		125.04	58.581	1	11123000			10231	1854	7172	7235	10007	10007					0.10400388844914232
EEVKRIQSI	9	Unmodified	_EEVKRIQSI_					0	0	0		ENSG00000013275|ENST00000157812|PSMC4;ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;ENST00000601697.5_1_19:40477100-40486546:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4	ENSG00000013275|ENST00000157812|PSMC4	ENSG00000013275|ENST00000157812|PSMC4	MULTI-MSMS	A375_MHC_IP_R1	1	551.7164306640625	2	551.316763	1100.61897	-0.79005	-0.00043557	0.010322	5.6909E-06	-0.77973	-0.00042988	551.3167371143925	25.892	0.50642	25.892	25.664	26.17	0					18	9	3	0	0	0	0.2989	1	7693	7693		30.703	11.341	1	3814400			10232	1016	7173	7236	10008	10008					0.07268799534767822
EEVKRIQSI	9	Unmodified	_EEVKRIQSI_					0	0	0		ENSG00000013275|ENST00000157812|PSMC4;ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;ENST00000601697.5_1_19:40477100-40486546:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4	ENSG00000013275|ENST00000157812|PSMC4	ENSG00000013275|ENST00000157812|PSMC4	MULTI-SECPEP	A375_MHC_IP_R2	2	551.716064453125	2	551.316763	1100.61897	-1.2194	-0.00067229	0.26673	0.00014705	-0.95269	-0.00052523	551.3169221563982	25.287	0.50958	25.93	25.719	26.229	0.64368					17	9	2	0	0	0	0.25548	1	8440	8440		61.602	3.8799	1	2865900			10233	1016	7173	7236	10009	10009					0.07268799534767822
EEVKVLLEK	9	Unmodified	_EEVKVLLEK_					0	0	0		ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-2|CACYBP;ENST00000483307.1_1_1:174969088-174974127:+|nuORF	ENSG00000116161|ENST00000367679|CACYBP	ENSG00000116161|ENST00000367679|CACYBP	MULTI-SECPEP	A375_MHC_IP_R1	1	543.198486328125	2	543.823889	1085.63323	-0.80974	-0.00044035	0.63916	0.00034759	-0.17057	-9.2762E-05	543.824087111499	37.971	0.25585	37.971	37.862	38.118	0					10	4	3	0	0	0	0.73008	1	12849	12849		8.1555	2.8586	1	927170			10234	3378	7174	7237	10010	10010					0.09383451963049083
EEVLAVFKSY	10	Unmodified	_EEVLAVFKSY_					0	0	0		ENST00000582313.5_1_18:245829-268019:-|nuORF;nc|ENSG00000079134|Q96FV9-2|THOC1;ENST00000578529.5_1_18:214628-260326:-|nuORF;ENSG00000079134|ENST00000261600|THOC1	ENST00000582313.5_1_18:245829-268019:-|nuORF	ENST00000582313.5_1_18:245829-268019:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	593.2128295898438	2	592.813522	1183.61249	-0.42497	-0.00025193	-0.30635	-0.00018161	-0.73132	-0.00043354	592.8133796169403	91.493	0.60777	91.493	91.199	91.807	0					17	11	2	0	0	0	0.35773	1	33621	33621		79.427	64.589	1	2612100			10235	1687	7175	7238	10011	10011					0.028028615834045922
EEVLAVFKSY	10	Unmodified	_EEVLAVFKSY_					0	0	0		ENST00000582313.5_1_18:245829-268019:-|nuORF;nc|ENSG00000079134|Q96FV9-2|THOC1;ENST00000578529.5_1_18:214628-260326:-|nuORF;ENSG00000079134|ENST00000261600|THOC1	ENST00000582313.5_1_18:245829-268019:-|nuORF	ENST00000582313.5_1_18:245829-268019:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	593.0176391601562	2	592.813522	1183.61249	-0.46288	-0.0002744	-0.13219	-7.8366E-05	-0.59507	-0.00035277	592.8132654385362	90.733	0.55712	91.468	91.16	91.717	0.7345					15	10	2	0	0	0	0.32321	1	34561	34561		57.108	35.571	1	1543000			10236	1687	7175	7238	10012	10012					0.028028615834045922
EEVLGLLS	8	Unmodified	_EEVLGLLS_					0	0	0			REV__ENSG00000155850|ENST00000286298|SLC26A2	REV__ENSG00000155850|ENST00000286298|SLC26A2	MSMS	A375_MHC_IP_R2	2	430.54705810546875	2	430.242201	858.469849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.382	1	89.114	88.614	89.614	0.7318								0	0	0	0.16876	1	33633	33633		5.2307	0	1		+		10237	19942	7176	7239	10013	10013					0.03495273912017183
EEVLHNLEF	9	Unmodified	_EEVLHNLEF_					0	0	0		nc|ENSG00000110888|Q6IMN6|CAPRIN2;nc|ENSG00000110888|Q6IMN6-9|CAPRIN2;ENSG00000110888|ENST00000695402|CAPRIN2;nc|ENSG00000110888|Q6IMN6-2|CAPRIN2;nc|ENSG00000110888|Q6IMN6-3|CAPRIN2;nc|ENSG00000110888|Q6IMN6-7|CAPRIN2;nc|ENSG00000110888|Q6IMN6-10|CAPRIN2;nc|ENSG00000110888|Q6IMN6-6|CAPRIN2;ENST00000546129.1_1_12:30887900-30904061:-|nuORF;nc|ENSG00000110888|Q6IMN6-5|CAPRIN2	nc|ENSG00000110888|Q6IMN6|CAPRIN2	nc|ENSG00000110888|Q6IMN6|CAPRIN2	MULTI-SECPEP	A375_MHC_IP_R1	1	565.6801147460938	2	565.279846	1128.54514	-0.366	-0.00020689	0.8619	0.00048722	0.4959	0.00028033	565.280078462942	81.588	0.35393	81.588	81.404	81.758	0					17	6	3	0	0	0	0.036758	1	29847	29847		99.755	53.734	1	1758700			10238	2955	7177	7240	10014	10014					-0.013991686275630855
EEVLHNLEF	9	Unmodified	_EEVLHNLEF_					0	0	0		nc|ENSG00000110888|Q6IMN6|CAPRIN2;nc|ENSG00000110888|Q6IMN6-9|CAPRIN2;ENSG00000110888|ENST00000695402|CAPRIN2;nc|ENSG00000110888|Q6IMN6-2|CAPRIN2;nc|ENSG00000110888|Q6IMN6-3|CAPRIN2;nc|ENSG00000110888|Q6IMN6-7|CAPRIN2;nc|ENSG00000110888|Q6IMN6-10|CAPRIN2;nc|ENSG00000110888|Q6IMN6-6|CAPRIN2;ENST00000546129.1_1_12:30887900-30904061:-|nuORF;nc|ENSG00000110888|Q6IMN6-5|CAPRIN2	nc|ENSG00000110888|Q6IMN6|CAPRIN2	nc|ENSG00000110888|Q6IMN6|CAPRIN2	MULTI-MATCH	A375_MHC_IP_R2	2		2	565.279846	1128.54514	-0.53506	-0.00030246	-0.63137	-0.0003569	-1.1664	-0.00065936	565.2796824753466	80.814	0.56233	81.559	81.265	81.828	0.74473	-0.014397	-0.00048332	NaN	99.755	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2136700			10239	2955	7177	7240							-0.013991686275630855
EEVLIHGVSY	10	Unmodified	_EEVLIHGVSY_					0	0	0		ENSG00000099910|ENST00000328879|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	MULTI-SECPEP	A375_MHC_IP_R1	1	573.6951904296875	2	573.295496	1144.57644	-0.46066	-0.00026409	0.26866	0.00015402	-0.192	-0.00011007	573.2955503631977	66.664	0.76526	66.664	66.377	67.143	0					31	14	3	0	0	0	0.019582	1	24128	24128		147.06	94.791	1	10075000			10240	2092	7178	7241	10015	10015					0.00993404406517584
EEVLIHGVSY	10	Unmodified	_EEVLIHGVSY_					0	0	0		ENSG00000099910|ENST00000328879|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	MULTI-MSMS	A375_MHC_IP_R2	2	573.3715209960938	2	573.295496	1144.57644	-0.44564	-0.00025548	-0.018135	-1.0397E-05	-0.46377	-0.00026588	573.2953410295963	65.921	0.71283	66.659	66.324	67.037	0.73812					30	13	3	0	0	0	0.19329	1	25077	25077		49.933	19.296	1	7734200			10241	2092	7178	7241	10016	10016					0.00993404406517584
EEVLIKNGEI	10	Unmodified	_EEVLIKNGEI_					0	0	0		ATRIP|p.L345Afs*22|1|0.5|ENSG00000164053|chr3:48459889-48459890|CC/-|frameshift_variant;nc|ENSG00000164053|Q8WXE1-5|ATRIP;nc|ENSG00000164053|Q8WXE1-3|ATRIP;nc|ENSG00000164053|Q8WXE1-2|ATRIP;ENSG00000164053|ENST00000320211|ATRIP	ATRIP|p.L345Afs*22|1|0.5|ENSG00000164053|chr3:48459889-48459890|CC/-|frameshift_variant	ATRIP|p.L345Afs*22|1|0.5|ENSG00000164053|chr3:48459889-48459890|CC/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	572.71630859375	2	572.316428	1142.6183	-0.1591	-9.1057E-05	-0.10594	-6.0634E-05	-0.26505	-0.00015169	572.3161603009204	56.779	0.45765	56.779	56.447	56.905	0					14	8	2	0	0	0	0.55307	1	20364	20364		43.772	10.987	1	1702600			10242	215	7179	7242	10017	10017					0.05269960095074566
EEVLIKNGEI	10	Unmodified	_EEVLIKNGEI_					0	0	0		ATRIP|p.L345Afs*22|1|0.5|ENSG00000164053|chr3:48459889-48459890|CC/-|frameshift_variant;nc|ENSG00000164053|Q8WXE1-5|ATRIP;nc|ENSG00000164053|Q8WXE1-3|ATRIP;nc|ENSG00000164053|Q8WXE1-2|ATRIP;ENSG00000164053|ENST00000320211|ATRIP	ATRIP|p.L345Afs*22|1|0.5|ENSG00000164053|chr3:48459889-48459890|CC/-|frameshift_variant	ATRIP|p.L345Afs*22|1|0.5|ENSG00000164053|chr3:48459889-48459890|CC/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	572.316428	1142.6183	-0.41724	-0.00023879	-0.61604	-0.00035257	-1.0333	-0.00059136	572.3160530959743	55.88	0.51054	56.63	56.337	56.847	0.75014	-0.074182	-0.00047658	NaN	43.772	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1530000			10243	215	7179	7242							0.05269960095074566
EEVLIPDQKY	10	Unmodified	_EEVLIPDQKY_					0	0	0		ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	MULTI-SECPEP	A375_MHC_IP_R1	1	617.7215576171875	2	617.321711	1232.62887	-0.34738	-0.00021444	0.19073	0.00011774	-0.15665	-9.6703E-05	617.3217765244558	60.329	0.71351	60.329	60.006	60.719	0					38	13	5	0	0	0	0.011835	1	21674	21674		140.63	140.63	1	26791000			10244	900	7180	7243	10018	10018					0.021859427494746342
EEVLIPDQKY	10	Unmodified	_EEVLIPDQKY_					0	0	0		ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	MULTI-SECPEP	A375_MHC_IP_R2	2	617.7216186523438	2	617.321711	1232.62887	-1.037	-0.00064014	0.31874	0.00019677	-0.71821	-0.00044337	617.3218530880365	59.633	0.65535	60.38	60.098	60.753	0.74714					39	12	4	0	0	0	0.066228	1	22533	22533		83.429	31.799	1	25060000			10245	900	7180	7243	10019	10019					0.021859427494746342
EEVLLVRNL	9	Unmodified	_EEVLLVRNL_					0	0	0		ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1;ENST00000569733.6_1_16:67575293-67580037:+|nuORF	ENSG00000039523|ENST00000042381|RIPOR1	ENSG00000039523|ENST00000042381|RIPOR1	MULTI-SECPEP	A375_MHC_IP_R1	1	543.2210083007812	2	542.821681	1083.62881	-0.63813	-0.00034639	-0.00086815	-4.7125E-07	-0.639	-0.00034686	542.8216464043724	81.275	0.60845	81.275	80.948	81.556	0					26	11	3	0	0	0	0.04395	1	29702	29702		62.573	44.426	1	3290500			10246	1159	7181	7244	10020	10020					0.09033987540146882
EEVLLVRNL	9	Unmodified	_EEVLLVRNL_					0	0	0		ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1;ENST00000569733.6_1_16:67575293-67580037:+|nuORF	ENSG00000039523|ENST00000042381|RIPOR1	ENSG00000039523|ENST00000042381|RIPOR1	MULTI-MATCH	A375_MHC_IP_R2	2		2	542.821681	1083.62881	-0.83737	-0.00045454	-0.0066021	-3.5838E-06	-0.84397	-0.00045812	542.8216912774744	80.292	0.40512	81.036	80.86	81.265	0.74474	-0.11946	-3.0635E-06	NaN	62.573	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3188300			10247	1159	7181	7244							0.09033987540146882
EEVLVAAKKI	10	Unmodified	_EEVLVAAKKI_					0	0	0		ENSG00000213949|ENST00000282588|ITGA1	ENSG00000213949|ENST00000282588|ITGA1	ENSG00000213949|ENST00000282588|ITGA1	MULTI-SECPEP	A375_MHC_IP_R1	1	550.7393188476562	2	550.339707	1098.66486	-0.90762	-0.0004995	0.48708	0.00026806	-0.42054	-0.00023144	550.3399017910775	38.243	0.50993	38.243	38.067	38.577	0					14	9	2	0	0	0	0.077317	1	12986	12986		89.401	56.615	1	3943600			10248	9592	7182	7245	10021	10021					0.1194744471699778
EEVLVAAKKI	10	Unmodified	_EEVLVAAKKI_					0	0	0		ENSG00000213949|ENST00000282588|ITGA1	ENSG00000213949|ENST00000282588|ITGA1	ENSG00000213949|ENST00000282588|ITGA1	MULTI-SECPEP	A375_MHC_IP_R2	2	366.9415283203125	3	367.228897	1098.66486	-0.28188	-0.00010351	0.16439	6.037E-05	-0.11749	-4.3145E-05	367.22893815287387	37.388	0.40955	38.159	37.917	38.327	0.7709					17	7	3	0	0	0	0.56504	1	13664	13664		23.801	8.0624	1	2796400			10249	9592	7182	7245	10022	10022					0.1194744471699778
EEVLVAAKKI	10	Unmodified	_EEVLVAAKKI_					0	0	0		ENSG00000213949|ENST00000282588|ITGA1	ENSG00000213949|ENST00000282588|ITGA1	ENSG00000213949|ENST00000282588|ITGA1	MULTI-MATCH	A375_MHC_IP_R2	2		2	550.339707	1098.66486	-1.2117	-0.00066685	0.34229	0.00018837	-0.86942	-0.00047847	550.3398054662433	37.426	0.35786	38.197	37.917	38.275	0.7709	-0.02303	-0.00010613	NaN	79.596	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4316500			10250	9592	7182	7245							0.1194744471699778
EEVLVEATVKH	11	Unmodified	_EEVLVEATVKH_					0	0	0		ENSG00000175699|ENST00000636493|CCDC197;nc|ENSG00000175699|Q8NCU1-2|CCDC197;nc|ENSG00000175699|Q8NCU1|CCDC197	ENSG00000175699|ENST00000636493|CCDC197;nc|ENSG00000175699|Q8NCU1|CCDC197	nc|ENSG00000175699|Q8NCU1|CCDC197	MULTI-SECPEP	A375_MHC_IP_R2	2	627.7391357421875	2	627.340435	1252.66632	-1.2757	-0.0008003	-0.36087	-0.00022639	-1.6366	-0.0010267	627.3401461271079	25.764	0.50887	26.424	26.245	26.754	0.65992					20	9	3	0	0	0	0.9889	1	8647	8647		12.241	0	1	19514000			10251	7976;14779	7183	7246	10023	10023					0.05009034015074576
EEVLVLESPV	10	Unmodified	_EEVLVLESPV_					0	0	0			REV__ENST00000393145.5_1_16:89220228-89220612:+|nuORF	REV__ENST00000393145.5_1_16:89220228-89220612:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	372.2742614746094	3	371.872778	1112.59651	0.42535	0.00015817	2.897	0.0010773	3.3223	0.0012355	371.8743071385751	56.057	0.60773	56.057	55.79	56.397	0					19	11	3	0	0	0	0.93615	1	20085	20085		3.8763	0	1	2077200	+		10252	21413	7184	7247	10024	10024					0.04471155346482192
EEVNEWFTKY	10	Unmodified	_EEVNEWFTKY_					0	0	0		ENSG00000053372|ENST00000330263|MRTO4;ENST00000515049.1_1_17:48016676-48017012:+|nuORF	ENSG00000053372|ENST00000330263|MRTO4	ENSG00000053372|ENST00000330263|MRTO4	MULTI-MSMS	A375_MHC_IP_R1	1	673.208984375	2	672.808968	1343.60338	-0.82817	-0.0005572	0.36936	0.00024851	-0.4588	-0.00030869	673.3108590045007	84.345	0.40456	84.345	84.141	84.545	0					18	7	3	0	0	0	0.0045604	2	30865	30835;30865		135.86	122.82	1	3666600			10253	1247	7185	7248	10025;10026	10026					-0.05467531772956136
EEVNEWFTKY	10	Unmodified	_EEVNEWFTKY_					0	0	0		ENSG00000053372|ENST00000330263|MRTO4;ENST00000515049.1_1_17:48016676-48017012:+|nuORF	ENSG00000053372|ENST00000330263|MRTO4	ENSG00000053372|ENST00000330263|MRTO4	MULTI-MSMS	A375_MHC_IP_R2	2	673.2076416015625	2	672.808968	1343.60338	-0.67534	-0.00045437	0.021013	1.4138E-05	-0.65432	-0.00044023	672.8092723925772	83.743	0.51225	84.483	84.254	84.766	0.73962					15	9	2	0	0	0	0.0094485	2	31817	31769;31817		108.26	93.014	1	3669900			10254	1247	7185	7248	10027;10028	10028					-0.05467531772956136
EEVNIPNRRV	10	Unmodified	_EEVNIPNRRV_					0	0	0		nc|ENSG00000038274|Q9NZL9-4|MAT2B;nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B;ENST00000519719.1_1_5:162930400-162939205:+|nuORF;nc|ENSG00000038274|Q9NZL9-5|MAT2B;ENST00000523606.1_1_5:162932677-162939205:+|nuORF;nc|ENSG00000038274|Q9NZL9-3|MAT2B	nc|ENSG00000038274|Q9NZL9-4|MAT2B	nc|ENSG00000038274|Q9NZL9-4|MAT2B	MULTI-MSMS	A375_MHC_IP_R1	1	409.6264953613281	3	409.226438	1224.65748	-0.13944	-5.7064E-05	0.012669	5.1845E-06	-0.12677	-5.1879E-05	409.226453545238	27.441	1.0086	27.441	27.229	28.238	0					50	19	6	0	0	0	0.21482	1	8312	8312		47.732	20.644	1	101470000			10255	1151	7186	7249	10029	10029					0.054141051692568
EEVNIPNRRV	10	Unmodified	_EEVNIPNRRV_					0	0	0		nc|ENSG00000038274|Q9NZL9-4|MAT2B;nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B;ENST00000519719.1_1_5:162930400-162939205:+|nuORF;nc|ENSG00000038274|Q9NZL9-5|MAT2B;ENST00000523606.1_1_5:162932677-162939205:+|nuORF;nc|ENSG00000038274|Q9NZL9-3|MAT2B	nc|ENSG00000038274|Q9NZL9-4|MAT2B	nc|ENSG00000038274|Q9NZL9-4|MAT2B	MULTI-MSMS	A375_MHC_IP_R1	1	613.73583984375	2	613.336018	1224.65748	-0.40261	-0.00024693	-0.30598	-0.00018767	-0.70858	-0.0004346	613.3358387409457	27.457	0.40417	27.457	27.229	27.634	0					18	7	3	0	0	0	0.0086373	1	8316	8316		117.76	84.975	1	20470000			10256	1151	7186	7249	10030	10030					0.054141051692568
EEVNIPNRRV	10	Unmodified	_EEVNIPNRRV_					0	0	0		nc|ENSG00000038274|Q9NZL9-4|MAT2B;nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B;ENST00000519719.1_1_5:162930400-162939205:+|nuORF;nc|ENSG00000038274|Q9NZL9-5|MAT2B;ENST00000523606.1_1_5:162932677-162939205:+|nuORF;nc|ENSG00000038274|Q9NZL9-3|MAT2B	nc|ENSG00000038274|Q9NZL9-4|MAT2B	nc|ENSG00000038274|Q9NZL9-4|MAT2B	MULTI-MSMS	A375_MHC_IP_R2	2	613.7354125976562	2	613.336018	1224.65748	-0.78656	-0.00048243	-0.31221	-0.00019149	-1.0988	-0.00067391	613.3360783064977	26.831	0.76693	27.491	27.313	28.08	0.65992					26	14	3	0	0	0	0.0038974	2	9109	9057;9109		125.04	92.252	1	21081000			10257	1151	7186	7249	10031;10032	10032					0.054141051692568
EEVNIPNRRV	10	Unmodified	_EEVNIPNRRV_					0	0	0		nc|ENSG00000038274|Q9NZL9-4|MAT2B;nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B;ENST00000519719.1_1_5:162930400-162939205:+|nuORF;nc|ENSG00000038274|Q9NZL9-5|MAT2B;ENST00000523606.1_1_5:162932677-162939205:+|nuORF;nc|ENSG00000038274|Q9NZL9-3|MAT2B	nc|ENSG00000038274|Q9NZL9-4|MAT2B	nc|ENSG00000038274|Q9NZL9-4|MAT2B	MULTI-MSMS	A375_MHC_IP_R2	2	409.62615966796875	3	409.226438	1224.65748	-0.22491	-9.2041E-05	-0.005885	-2.4083E-06	-0.2308	-9.4449E-05	409.2264515435545	26.831	0.71535	27.491	27.262	27.977	0.65992					39	13	5	0	0	0	0.28986	1	9086	9086		40.725	22.004	1	112200000			10258	1151	7186	7249	10033	10033					0.054141051692568
EEVNKWLHF	9	Unmodified	_EEVNKWLHF_					0	0	0		nc|nan|Q9H0W9-4|C11orf54;nc|nan|Q9H0W9-3|C11orf54;nc|nan|Q9H0W9-2|C11orf54;ENSG00000182919|ENST00000354421|C11orf54	nc|nan|Q9H0W9-4|C11orf54	nc|nan|Q9H0W9-4|C11orf54	MULTI-SECPEP	A375_MHC_IP_R2	2	401.60479736328125	3	401.204862	1200.59276	-0.074494	-2.9888E-05	0.0021365	8.5718E-07	-0.072358	-2.903E-05	401.20473404802	75.027	0.35256	75.765	75.57	75.922	0.73751					16	6	3	0	0	0	0.60012	1	28506	28506		22.736	20.994	1	1706800			10259	8447	7187	7250	10034	10034					0.00048530363278587174
EEVNKWLHF	9	Unmodified	_EEVNKWLHF_					0	0	0		nc|nan|Q9H0W9-4|C11orf54;nc|nan|Q9H0W9-3|C11orf54;nc|nan|Q9H0W9-2|C11orf54;ENSG00000182919|ENST00000354421|C11orf54	nc|nan|Q9H0W9-4|C11orf54	nc|nan|Q9H0W9-4|C11orf54	MULTI-MATCH	A375_MHC_IP_R1	1		3	401.204862	1200.59276	-0.33619	-0.00013488	0.37828	0.00015177	0.04209	1.6887E-05	401.20504909880634	75.82	0.45286	75.82	75.614	76.067	0	0.027436	0.0002524	NaN	22.736	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1214600			10260	8447	7187	7250							0.00048530363278587174
EEVNLNGSGKL	11	Unmodified	_EEVNLNGSGKL_					0	0	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MULTI-SECPEP	A375_MHC_IP_R1	1	580.7012939453125	2	580.30131	1158.58807	-0.41831	-0.00024274	0.1797	0.00010428	-0.23861	-0.00013846	580.3013373925081	41.139	0.60538	41.139	40.762	41.368	0					22	11	3	0	0	0	0.0075093	1	14177	14177		135.72	61.519	1	8166200			10261	3312	7188	7251	10035	10035					0.0151160142986555
EEVNLNGSGKL	11	Unmodified	_EEVNLNGSGKL_					0	0	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MULTI-MSMS	A375_MHC_IP_R2	2	580.7010498046875	2	580.30131	1158.58807	-0.36708	-0.00021302	0.018765	1.0889E-05	-0.34832	-0.00020213	580.3012398538327	40.368	0.50816	41.143	40.93	41.438	0.77451					19	9	3	0	0	0	0.027075	1	14964	14964		108.26	54.429	1	5752200			10262	3312	7188	7251	10036	10036					0.0151160142986555
EEVNYTKKI	9	Unmodified	_EEVNYTKKI_					0	0	0		ENSG00000149150|ENST00000278426|SLC43A1;nc|ENSG00000149150|O75387-2|SLC43A1	ENSG00000149150|ENST00000278426|SLC43A1	ENSG00000149150|ENST00000278426|SLC43A1	MSMS	A375_MHC_IP_R2	2	375.2645263671875	3	375.20464	1122.59209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.441	1	24.071	23.571	24.571	0.63014								0	0	0	0.14714	1	7540	7540		24.882	12.026	1				10263	5786	7189	7252	10037	10037					0.035696909235639396
EEVPHEPPF	9	Unmodified	_EEVPHEPPF_					0	0	0			REV__HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	REV__HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	541.182373046875	2	540.753464	1079.49238	-0.59881	-0.00032381	0.77486	0.00041901	0.17604	9.5196E-05	540.7538827868325	52.202	0.66036	52.202	51.982	52.643	0					17	12	2	0	0	0	0.2264	1	18543	18543		36.044	1.9418	1	2884000	+		10264	18467	7190	7253	10038	10038					-0.044191266903681026
EEVPHEPPF	9	Unmodified	_EEVPHEPPF_					0	0	0			REV__HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	REV__HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	541.1690063476562	2	540.753464	1079.49238	-1.0584	-0.00057233	0.62361	0.00033722	-0.43478	-0.00023511	540.7538116932542	51.514	0.65983	52.266	51.966	52.626	0.75225					17	12	2	0	0	0	0.2264	3	19328	19328;19341;19409		36.044	7.5574	1	2838000	+		10265	18467	7190	7253	10039;10040;10041	10039					-0.044191266903681026
EEVPSGVIPNL	11	Unmodified	_EEVPSGVIPNL_					0	0	0		ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	MULTI-SECPEP	A375_MHC_IP_R1	1	577.1649169921875	2	577.308603	1152.60265	0.084129	4.8569E-05	0.19297	0.0001114	0.2771	0.00015997	577.3085260775059	108.48	1.0133	108.48	107.9	108.92	0					47	19	3	0	0	0	0.35809	1	39695	39695		40.239	24.991	1	11259000			10266	1191	7191	7254	10042	10042					0.03245673578021524
EEVPSGVIPNL	11	Unmodified	_EEVPSGVIPNL_					0	0	0		ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	MULTI-SECPEP	A375_MHC_IP_R2	2	577.1651611328125	2	577.308603	1152.60265	-0.19826	-0.00011446	-0.33587	-0.0001939	-0.53413	-0.00030836	577.3083689643213	107.82	0.86871	108.57	108.15	109.02	0.75436					49	16	4	0	0	0	0.45816	1	40626	40626		51.415	51.415	1	12357000			10267	1191	7191	7254	10043	10043					0.03245673578021524
EEVPVFLLF	9	Unmodified	_EEVPVFLLF_					0	0	0		nc|ENSG00000150712|Q9C0I1-2|MTMR12;ENSG00000150712|ENST00000382142|MTMR12	nc|ENSG00000150712|Q9C0I1-2|MTMR12	nc|ENSG00000150712|Q9C0I1-2|MTMR12	MULTI-SECPEP	A375_MHC_IP_R1	1	547.2017822265625	2	546.802426	1091.5903	-0.85567	-0.00046788	0.031029	1.6967E-05	-0.82464	-0.00045091	546.8024624578244	138.08	0.35757	138.08	137.95	138.31	0					11	6	3	0	0	0	0.24479	1	53145	53145		42.095	34.184	1	1793600			10268	5858	7192	7255	10044	10044					0.0481668190561777
EEVPVFLLF	9	Unmodified	_EEVPVFLLF_					0	0	0		nc|ENSG00000150712|Q9C0I1-2|MTMR12;ENSG00000150712|ENST00000382142|MTMR12	nc|ENSG00000150712|Q9C0I1-2|MTMR12	nc|ENSG00000150712|Q9C0I1-2|MTMR12	MULTI-SECPEP	A375_MHC_IP_R2	2	547.2020263671875	2	546.802426	1091.5903	-0.59984	-0.000328	-0.26314	-0.00014389	-0.86299	-0.00047188	546.8022181445396	138	0.30531	138.09	137.91	138.22	0.083969					8	5	2	0	0	0	0.47368	1	54157	54157		26.884	14.352	1	1448800			10269	5858	7192	7255	10045	10045					0.0481668190561777
EEVPVRPA	8	Unmodified	_EEVPVRPA_					0	0	0			REV__ENSG00000188937|ENST00000378220|NYX	REV__ENSG00000188937|ENST00000378220|NYX	MULTI-SECPEP	A375_MHC_IP_R1	1	448.09539794921875	2	448.745442	895.476331	-0.00381	-1.7097E-06	3.5712	0.0016026	3.5674	0.0016008	448.747176974551	42.418	0.45477	42.418	42.132	42.587	0					10	8	2	0	0	0	0.97144	1	14713	14713		9.3474	0	1	575160	+		10270	22127	7193	7256	10046	10046					0.02441211863379067
EEVQAMQSF	9	Unmodified	_EEVQAMQSF_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.S3306Afs*6|1|0.29|ENSG00000086758|chrX:53549078-53549079|-/ACGC|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	A375_MHC_IP_R1	1	535.1139526367188	2	534.736957	1067.45936	-0.92075	-0.00049236	0.13501	7.2197E-05	-0.78573	-0.00042016	534.7370377962117	66.81	0.61313	66.81	66.478	67.091	0					20	11	2	0	0	0	0.4465	1	24175	24175		31.268	18.226	1	1640400			10271	1846	7194	7257	10047	10047					-0.07167076804739736
EEVQFLKTL	9	Unmodified	_EEVQFLKTL_					0	0	0		nc|ENSG00000090861|P49588-2|AARS1;ENSG00000090861|ENST00000261772|AARS1	nc|ENSG00000090861|P49588-2|AARS1	nc|ENSG00000090861|P49588-2|AARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	554.2075805664062	2	553.808239	1105.60193	-0.75592	-0.00041863	0.22274	0.00012335	-0.53318	-0.00029528	553.8082694295075	85.229	1.1698	85.229	84.852	86.022	0					58	22	4	0	0	0	0.0034661	1	31181	31181		184.36	99.833	1	36300000			10272	14498	7195	7258	10048	10048					0.05334878928965736
EEVQFLKTL	9	Unmodified	_EEVQFLKTL_					0	0	0		nc|ENSG00000090861|P49588-2|AARS1;ENSG00000090861|ENST00000261772|AARS1	nc|ENSG00000090861|P49588-2|AARS1	nc|ENSG00000090861|P49588-2|AARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	553.191650390625	2	553.808239	1105.60193	-0.68258	-0.00037802	0.14688	8.1346E-05	-0.53569	-0.00029667	553.8082411669433	84.339	1.2221	85.077	84.712	85.935	0.73737					57	23	5	0	0	0	0.0031079	1	32031	32031		187.14	111.38	1	31949000			10273	14498	7195	7258	10049	10049					0.05334878928965736
EEVQRKLGF	9	Unmodified	_EEVQRKLGF_					0	0	0		ENSG00000137965|ENST00000370747|IFI44;ENST00000485662.1_1_1:79126346-79129493:+|nuORF;ENST00000476911.1_1_1:79128352-79129493:+|nuORF	ENSG00000137965|ENST00000370747|IFI44	ENSG00000137965|ENST00000370747|IFI44	MULTI-MSMS	A375_MHC_IP_R1	1	369.93951416015625	3	369.204862	1104.59276	0.38088	0.00014062	0.027677	1.0218E-05	0.40856	0.00015084	369.20482663435786	35.076	1.0714	35.076	34.861	35.932	0					41	20	4	0	0	0	0.27715	1	11619	11619		23.79	10.175	1	16736000			10274	4940	7196	7259	10050	10050					0.044645303632933064
EEVQRKLGF	9	Unmodified	_EEVQRKLGF_					0	0	0		ENSG00000137965|ENST00000370747|IFI44;ENST00000485662.1_1_1:79126346-79129493:+|nuORF;ENST00000476911.1_1_1:79128352-79129493:+|nuORF	ENSG00000137965|ENST00000370747|IFI44	ENSG00000137965|ENST00000370747|IFI44	MULTI-SECPEP	A375_MHC_IP_R1	1	553.7037963867188	2	553.303655	1104.59276	-0.46692	-0.00025835	0.55187	0.00030535	0.084953	4.7005E-05	553.3038406004155	35.08	0.50846	35.08	34.861	35.369	0					24	9	3	0	0	0	0.022401	1	11632	11632		110.67	60.742	1	6802600			10275	4940	7196	7259	10051	10051					0.044645303632933064
EEVQRKLGF	9	Unmodified	_EEVQRKLGF_					0	0	0		ENSG00000137965|ENST00000370747|IFI44;ENST00000485662.1_1_1:79126346-79129493:+|nuORF;ENST00000476911.1_1_1:79128352-79129493:+|nuORF	ENSG00000137965|ENST00000370747|IFI44	ENSG00000137965|ENST00000370747|IFI44	MULTI-SECPEP	A375_MHC_IP_R2	2	369.60467529296875	3	369.204862	1104.59276	-0.01548	-5.7151E-06	0.013144	4.8527E-06	-0.0023359	-8.6242E-07	369.20479937649833	34.233	1.0139	34.985	34.853	35.867	0.75225					46	19	4	0	0	0	0.39388	1	12325	12325		29.841	21.895	1	15763000			10276	4940	7196	7259	10052	10052					0.044645303632933064
EEVQRKLGF	9	Unmodified	_EEVQRKLGF_					0	0	0		ENSG00000137965|ENST00000370747|IFI44;ENST00000485662.1_1_1:79126346-79129493:+|nuORF;ENST00000476911.1_1_1:79128352-79129493:+|nuORF	ENSG00000137965|ENST00000370747|IFI44	ENSG00000137965|ENST00000370747|IFI44	MULTI-MATCH	A375_MHC_IP_R2	2		2	553.303655	1104.59276	-1.0779	-0.00059641	0.068714	3.802E-05	-1.0092	-0.00055839	553.3035191515628	34.327	0.40808	35.079	34.853	35.262	0.75225	-0.00068397	-0.0002558	NaN	142.08	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6902400			10277	4940	7196	7259							0.044645303632933064
EEVQVDPRKY	10	Unmodified	_EEVQVDPRKY_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MULTI-MSMS	A375_MHC_IP_R1	1	632.222412109375	2	631.822409	1261.63027	-0.87691	-0.00055405	0.25768	0.00016281	-0.61922	-0.00039124	631.8225539741806	32.609	0.95964	32.609	32.231	33.19	0					60	18	5	0	0	0	0.0030841	1	10473	10473		111.31	75.182	1	65168000			10278	1483	7197	7260	10053	10053					0.009915768382370516
EEVQVDPRKY	10	Unmodified	_EEVQVDPRKY_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MULTI-MSMS	A375_MHC_IP_R1	1	421.95086669921875	3	421.550698	1261.63027	-0.21453	-9.0433E-05	0.095913	4.0432E-05	-0.11861	-5.0001E-05	421.55076788987094	32.609	1.4719	32.609	32.075	33.547	0					94	28	6	0	0	0	0.27942	1	10705	10705		41.347	29.829	1	214090000			10279	1483	7197	7260	10054	10054					0.009915768382370516
EEVQVDPRKY	10	Unmodified	_EEVQVDPRKY_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MULTI-MSMS	A375_MHC_IP_R2	2	421.95068359375	3	421.550698	1261.63027	-0.1251	-5.2734E-05	0.039086	1.6477E-05	-0.086009	-3.6257E-05	421.5507524836534	31.975	1.5751	32.712	32.249	33.825	0.73691					98	30	6	0	0	0	0.018886	2	11247	11247;11486		86.276	49.881	1	216040000			10280	1483	7197	7260	10055;10056	10055					0.009915768382370516
EEVQVDPRKY	10	Unmodified	_EEVQVDPRKY_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MULTI-MSMS	A375_MHC_IP_R2	2	632.222412109375	2	631.822409	1261.63027	-0.81513	-0.00051502	0.29496	0.00018636	-0.52017	-0.00032866	631.8225947794546	31.984	1.0166	32.721	32.3	33.317	0.73691					58	19	5	0	0	0	0.008954	1	11259	11259		121.5	85.376	1	56926000			10281	1483	7197	7260	10057	10057					0.009915768382370516
EEVRLQSIH	9	Unmodified	_EEVRLQSIH_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;nc|ENSG00000149262|Q96HW7-3|INTS4;ENST00000433818.6_1_11:77629258-77692594:-|nuORF;nc|ENSG00000149262|Q96HW7-2|INTS4;ENST00000587624.5_1_7:64601607-64646883:+|nuORF	ENSG00000149262|ENST00000534064|INTS4;ENST00000587624.5_1_7:64601607-64646883:+|nuORF	ENSG00000149262|ENST00000534064|INTS4	MULTI-SECPEP	A375_MHC_IP_R1	1	556.1689453125	2	555.798737	1109.58292	-0.88409	-0.00049137	0.24515	0.00013625	-0.63894	-0.00035512	555.7987780852633	30.409	0.55538	30.409	30.251	30.806	0					21	10	3	0	0	0	0.47206	1	9658	9658		49.554	3.8144	1	3899100			10282	5794;13748	7198	7261	10058	10058					0.03251342357907561
EEVRQFRRL	9	Unmodified	_EEVRQFRRL_					0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	MULTI-SECPEP	A375_MHC_IP_R1	1	411.96673583984375	3	411.566794	1231.67855	-0.014759	-6.0741E-06	-0.26839	-0.00011046	-0.28315	-0.00011654	411.5667423099572	24.473	0.60683	24.473	24.296	24.903	0					32	11	4	0	0	0	0.14554	1	6955	6955		65.474	19.451	1	33477000			10283	4032	7199	7262	10059	10059					0.0719811526880676
EEVRQGLKAY	10	Unmodified	_EEVRQGLKAY_					0	0	0		ENSG00000108010|ENST00000331244|GLRX3	ENSG00000108010|ENST00000331244|GLRX3	ENSG00000108010|ENST00000331244|GLRX3	MULTI-MSMS	A375_MHC_IP_R1	1	398.615478515625	3	398.215539	1191.62479	-0.20115	-8.0101E-05	-0.054177	-2.1574E-05	-0.25533	-0.00010168	398.21552991497947	24.827	1.0668	24.827	24.647	25.714	0					53	20	5	0	0	0	0.19516	1	7133	7133		49.742	31.369	1	282950000			10284	2777	7200	7263	10060	10060					0.03663898046443137
EEVRQGLKAY	10	Unmodified	_EEVRQGLKAY_					0	0	0		ENSG00000108010|ENST00000331244|GLRX3	ENSG00000108010|ENST00000331244|GLRX3	ENSG00000108010|ENST00000331244|GLRX3	MULTI-MSMS	A375_MHC_IP_R1	1	597.2193603515625	2	596.81967	1191.62479	-0.43582	-0.00026011	-0.027335	-1.6314E-05	-0.46315	-0.00027642	596.8196539311159	24.826	0.70973	24.826	24.647	25.357	0					40	13	5	0	0	0	3.2881E-05	1	7136	7136		211.85	158.02	1	133240000			10285	2777	7200	7263	10061	10061					0.03663898046443137
EEVRQGLKAY	10	Unmodified	_EEVRQGLKAY_					0	0	0		ENSG00000108010|ENST00000331244|GLRX3	ENSG00000108010|ENST00000331244|GLRX3	ENSG00000108010|ENST00000331244|GLRX3	MULTI-MSMS	A375_MHC_IP_R2	2	398.6151123046875	3	398.215539	1191.62479	-0.38283	-0.00015245	0.057401	2.2858E-05	-0.32543	-0.00012959	398.21557307468066	24.238	1.117	24.882	24.705	25.822	0.64368					64	21	5	0	0	0	0.14129	1	7915	7915		55.249	35.623	1	433870000			10286	2777	7200	7263	10062	10062					0.03663898046443137
EEVRQGLKAY	10	Unmodified	_EEVRQGLKAY_					0	0	0		ENSG00000108010|ENST00000331244|GLRX3	ENSG00000108010|ENST00000331244|GLRX3	ENSG00000108010|ENST00000331244|GLRX3	MULTI-MSMS	A375_MHC_IP_R2	2	597.21923828125	2	596.81967	1191.62479	-0.86315	-0.00051514	0.26653	0.00015907	-0.59662	-0.00035607	596.8198286727934	24.238	0.75997	24.882	24.705	25.465	0.64368					43	14	4	0	0	0	2.7826E-05	1	7932	7932		211.85	164.11	1	169280000			10287	2777	7200	7263	10063	10063					0.03663898046443137
EEVRQVLYE	9	Unmodified	_EEVRQVLYE_					0	0	0			REV__nc|ENSG00000109466|O95198-3|KLHL2	REV__nc|ENSG00000109466|O95198-3|KLHL2	MSMS	A375_MHC_IP_R2	2	582.7297973632812	2	582.798403	1163.58225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.183	1	30.902	30.402	31.402	0.71857								0	0	0	0.15003	1	10593	10593		21.537	1.0834	1		+		10288	17580	7201	7264	10064	10064					0.00700502918220991
EEVRSLVTW	9	Unmodified	_EEVRSLVTW_					0	0	0		nc|ENSG00000152778|Q13325-2|IFIT5;ENSG00000152778|ENST00000371795|IFIT5	nc|ENSG00000152778|Q13325-2|IFIT5	nc|ENSG00000152778|Q13325-2|IFIT5	MULTI-SECPEP	A375_MHC_IP_R2	2	560.1958618164062	2	559.795663	1117.57677	-0.65593	-0.00036719	-0.066204	-3.7061E-05	-0.72213	-0.00040425	559.7954877396324	77.955	0.76699	78.698	78.365	79.132	0.74294					33	14	4	0	0	0	0.34544	1	29552	29552		38.615	10.986	1	12866000			10289	5983	7202	7265	10065	10065					0.022688241263722375
EEVRTVIRF	9	Unmodified	_EEVRTVIRF_					0	0	0		ENSG00000111145|ENST00000228741|ELK3	ENSG00000111145|ENST00000228741|ELK3	ENSG00000111145|ENST00000228741|ELK3	MULTI-MSMS	A375_MHC_IP_R1	1	383.9521179199219	3	383.552262	1147.63496	0.29964	0.00011493	0.20932	8.0284E-05	0.50896	0.00019521	383.55230031993256	53.439	0.50786	53.439	53.199	53.707	0					21	9	3	0	0	0	0.52197	1	19056	19056		18.721	9.1773	1	5440600			10290	2968	7203	7266	10066	10066					0.0670450577167685
EEVRTVIRF	9	Unmodified	_EEVRTVIRF_					0	0	0		ENSG00000111145|ENST00000228741|ELK3	ENSG00000111145|ENST00000228741|ELK3	ENSG00000111145|ENST00000228741|ELK3	MULTI-MSMS	A375_MHC_IP_R2	2	383.952392578125	3	383.552262	1147.63496	-0.56903	-0.00021825	0.26944	0.00010335	-0.29959	-0.00011491	383.5524556715032	52.561	0.55609	53.314	53.083	53.639	0.75225					21	10	3	0	0	0	0.41856	1	19832	19832		23.801	13.65	1	3403700			10291	2968	7203	7266	10067	10067					0.0670450577167685
EEVRTWVNL	9	Unmodified	_EEVRTWVNL_					0	0	0		ENSG00000149054|ENST00000278319|ZNF215;nc|ENSG00000149054|Q9UL58-2|ZNF215	ENSG00000149054|ENST00000278319|ZNF215	ENSG00000149054|ENST00000278319|ZNF215	MULTI-SECPEP	A375_MHC_IP_R1	1	572.7171020507812	2	573.301113	1144.58767	-0.18081	-0.00010366	3.2648	0.0018717	3.084	0.0017681	573.8041911134134	102.21	0.60723	102.21	101.95	102.56	0					17	11	2	0	0	0	0.65246	1	37522	37522		6.7232	0	1	2004500			10292	5779	7204	7267	10068	10068					0.021162265006751113
EEVSEHLFY	9	Unmodified	_EEVSEHLFY_					0	0	0		PHLPP2|p.P265S|1|0.59|ENSG00000040199|chr16:71681848-71681848|G/A|missense_variant	PHLPP2|p.P265S|1|0.59|ENSG00000040199|chr16:71681848-71681848|G/A|missense_variant	PHLPP2|p.P265S|1|0.59|ENSG00000040199|chr16:71681848-71681848|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	577.1649169921875	2	576.764029	1151.5135	0.085935	4.9564E-05	0.74558	0.00043002	0.83152	0.00047959	576.764606720781	108.18	0.60835	108.18	107.95	108.56	0					19	11	2	0	0	0	0.69504	1	39695	39695		7.9102	2.1783	1	1691200			10293	15170	7205	7268	10069	10069					-0.05619161381514459
EEVSGHLY	8	Unmodified	_EEVSGHLY_					0	0	0		nc|ENSG00000167930|Q9H0X4-2|FAM234A;ENSG00000167930|ENST00000399932|FAM234A	nc|ENSG00000167930|Q9H0X4-2|FAM234A	nc|ENSG00000167930|Q9H0X4-2|FAM234A	MULTI-SECPEP	A375_MHC_IP_R1	1	467.6191711425781	2	467.219257	932.423961	-0.39048	-0.00018244	0.20306	9.4873E-05	-0.18742	-8.7568E-05	467.2191700499879	33.101	0.45544	33.101	32.887	33.342	0					17	8	3	0	0	0	0.73517	1	10779	10779		34.187	7.8461	1	4949500			10294	7238	7206	7269	10070	10070					-0.044953712702408666
EEVSGHLY	8	Unmodified	_EEVSGHLY_					0	0	0		nc|ENSG00000167930|Q9H0X4-2|FAM234A;ENSG00000167930|ENST00000399932|FAM234A	nc|ENSG00000167930|Q9H0X4-2|FAM234A	nc|ENSG00000167930|Q9H0X4-2|FAM234A	MULTI-SECPEP	A375_MHC_IP_R2	2	467.6188049316406	2	467.219257	932.423961	-0.67259	-0.00031425	0.080632	3.7673E-05	-0.59196	-0.00027657	467.2192609251312	32.4	0.50801	33.137	32.96	33.468	0.73692					15	9	2	0	0	0	0.58504	1	11535	11535		42.968	16.627	1	4749400			10295	7238	7206	7269	10071	10071					-0.044953712702408666
EEVSKSVRAQ	10	Unmodified	_EEVSKSVRAQ_					0	0	0		nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB;nc|ENSG00000133961|P49757-9|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB	nc|ENSG00000133961|P49757-3|NUMB	nc|ENSG00000133961|P49757-3|NUMB	MULTI-SECPEP	A375_MHC_IP_R2	2	566.145263671875	2	566.801477	1131.5884	-0.88746	-0.00050301	3.5581	0.0020167	2.6706	0.0015137	566.803326257038	29.683	0.45312	30.381	30.185	30.638	0.69872					12	8	2	0	0	0	0.91909	1	10301	10301		13.906	1.3745	1	2262300			10296	4537	7207	7270	10072	10072					0.027870211497202035
EEVSLRRLL	9	Unmodified	_EEVSLRRLL_					0	0	0			REV__ENSG00000198944|ENST00000378693|SOWAHA	REV__ENSG00000198944|ENST00000378693|SOWAHA	MULTI-MSMS	A375_MHC_IP_R1	1	372.62432861328125	3	372.224146	1113.65061	0.3643	0.0001356	0.76722	0.00028558	1.1315	0.00042118	372.2241804119511	50.878	0.65778	50.878	50.613	51.27	0					38	12	5	0	0	0	0.32092	1	18030	18030		21.59	0	1	11869000	+		10297	22455	7208	7271	10073	10073					0.09832792288716519
EEVSLRRLL	9	Unmodified	_EEVSLRRLL_					0	0	0			REV__ENSG00000198944|ENST00000378693|SOWAHA	REV__ENSG00000198944|ENST00000378693|SOWAHA	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	372.224146	1113.65061	0.3643	0.0001356	0.76722	0.00028558	1.1315	0.00042118	372.2241804119511	50.878	0.65778	50.878	50.613	51.27	0	0	0	NaN	21.59	38	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11869000	+		10298	22455	7208	7271							0.09832792288716519
EEVSNGRQAK	10	Unmodified	_EEVSNGRQAK_					0	0	0			REV__ENSG00000175073|ENST00000310421|VCPIP1	REV__ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	A375_MHC_IP_R1	1	559.6947021484375	2	559.283451	1116.55235	-0.48135	-0.00026921	-1.0866	-0.00060772	-1.568	-0.00087693	559.7835998536958	60.072	1.0173	60.072	59.548	60.566	0					46	19	5	0	0	0	0.69833	1	21499	21499		13.042	0.51092	1	2413100	+		10299	21322	7209	7272	10074	10074					-0.001264360271534315
EEVSNTVSI	9	Unmodified	_EEVSNTVSI_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-SECPEP	A375_MHC_IP_R2	2	489.6421203613281	2	489.242929	976.471305	-0.65868	-0.00032225	1.7969	0.0008791	1.1382	0.00055685	489.24372184585434	55.322	1.2715	56.073	55.678	56.949	0.75075					52	24	3	0	0	0	0.20567	1	20854	20854		54.774	25.692	1	3114500			10300	6703	7210	7273	10075	10075					-0.017871367898919743
EEVTEFLKF	9	Unmodified	_EEVTEFLKF_					0	0	0		ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	MULTI-SECPEP	A375_MHC_IP_R1	1	571.6925659179688	2	571.292422	1140.57029	-0.12628	-7.2142E-05	0.24229	0.00013842	0.11601	6.6277E-05	571.2926478794026	106.05	0.717	106.05	105.76	106.47	0					28	13	3	0	0	0	0.31606	1	38927	38927		47.749	35.508	1	3547400			10301	4169	7211	7274	10076	10076					0.005628861749983116
EEVTEFLKF	9	Unmodified	_EEVTEFLKF_					0	0	0		ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	MULTI-SECPEP	A375_MHC_IP_R2	2	571.6915283203125	2	571.292422	1140.57029	-0.24862	-0.00014203	-0.64626	-0.0003692	-0.89488	-0.00051124	571.2923276252623	105.28	0.76274	106.04	105.72	106.48	0.76308					29	14	3	0	0	0	0.20451	1	39827	39827		57.722	21.595	1	2788200			10302	4169	7211	7274	10077	10077					0.005628861749983116
EEVTELLARY	10	Unmodified	_EEVTELLARY_					0	0	0		ENSG00000099817|ENST00000615234|POLR2E;ENST00000586817.5_1_19:1089487-1094188:-|nuORF	ENSG00000099817|ENST00000615234|POLR2E	ENSG00000099817|ENST00000615234|POLR2E	MULTI-SECPEP	A375_MHC_IP_R1	1	612.2190551757812	2	611.819335	1221.62412	-0.24027	-0.000147	0.058989	3.6091E-05	-0.18128	-0.00011091	611.8191596534976	88.521	0.55985	88.521	88.154	88.714	0					15	10	3	0	0	0	0.84881	1	32507	32507		34.932	28.726	1	2379700			10303	2086	7212	7275	10078	10078					0.02217058606743194
EEVTELLARY	10	Unmodified	_EEVTELLARY_					0	0	0		ENSG00000099817|ENST00000615234|POLR2E;ENST00000586817.5_1_19:1089487-1094188:-|nuORF	ENSG00000099817|ENST00000615234|POLR2E	ENSG00000099817|ENST00000615234|POLR2E	MULTI-SECPEP	A375_MHC_IP_R2	2	612.21923828125	2	611.819335	1221.62412	-0.44355	-0.00027137	0.75705	0.00046318	0.3135	0.0001918	611.8193363484984	87.79	0.40508	88.521	88.266	88.671	0.7318					13	7	3	0	0	0	0.46518	1	33409	33409		70.332	42.703	1	2015300			10304	2086	7212	7275	10079	10079					0.02217058606743194
EEVTELRRKY	10	Unmodified	_EEVTELRRKY_					0	0	0		nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26;nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	MULTI-MSMS	A375_MHC_IP_R1	1	441.9736328125	3	441.573614	1321.69901	-0.38158	-0.0001685	0.22913	0.00010118	-0.15245	-6.7317E-05	441.5736734447722	23.476	0.7639	23.476	23.278	24.042	0					31	14	3	0	0	0	0.054029	1	6452	6452		74.772	34.849	1	53151000			10305	5109	7213	7276	10080	10080					0.051032411379537734
EEVTELRRKY	10	Unmodified	_EEVTELRRKY_					0	0	0		nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26;nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	MULTI-MSMS	A375_MHC_IP_R2	2	441.9729919433594	3	441.573614	1321.69901	-0.68044	-0.00030046	0.043149	1.9053E-05	-0.63729	-0.00028141	441.5736457163118	21.587	0.61081	22.206	21.828	22.439	0.61932					41	11	5	0	0	0	0.11281	1	6753	6753		60.899	37.884	1	23193000			10306	5109	7213	7276	10081	10081					0.051032411379537734
EEVTELRRKY	10	Unmodified	_EEVTELRRKY_					0	0	0		nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26;nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	MULTI-SECPEP	A375_MHC_IP_R2	2	441.97320556640625	3	441.573614	1321.69901	-0.65416	-0.00028886	0.045478	2.0082E-05	-0.60869	-0.00026878	441.5736791606496	23.324	0.35328	23.954	23.726	24.079	0.63014					9	6	2	0	0	0	0.34614	1	7487	7487		53.47	29.668	1	14096000			10307	5109	7213	7276	10082	10082					0.051032411379537734
EEVTFIYQKL	10	Unmodified	_EEVTFIYQKL_					0	0	0		ENST00000590054.5_1_19:11457292-11462950:+|nuORF;ENST00000586479.1_1_19:11462501-11464130:+|nuORF;ENST00000588464.5_1_19:11462501-11464249:+|nuORF;nc|ENSG00000183401|P0C7I6-7|CCDC159;ENSG00000183401|ENST00000458408|CCDC159	ENST00000590054.5_1_19:11457292-11462950:+|nuORF	ENST00000590054.5_1_19:11457292-11462950:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	424.2953796386719	3	423.895695	1268.66525	-0.46722	-0.00019805	0.021537	9.1294E-06	-0.44568	-0.00018892	423.89563099649973	61.652	0.65384	62.398	62.172	62.826	0.74503					18	12	2	0	0	0	0.71175	1	23383	23383		7.0371	0.84524	1	2264900			10308	13780	7214	7277	10083	10083					0.04166819646161457
EEVTFIYQKL	10	Unmodified	_EEVTFIYQKL_					0	0	0		ENST00000590054.5_1_19:11457292-11462950:+|nuORF;ENST00000586479.1_1_19:11462501-11464130:+|nuORF;ENST00000588464.5_1_19:11462501-11464249:+|nuORF;nc|ENSG00000183401|P0C7I6-7|CCDC159;ENSG00000183401|ENST00000458408|CCDC159	ENST00000590054.5_1_19:11457292-11462950:+|nuORF	ENST00000590054.5_1_19:11457292-11462950:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	423.895695	1268.66525	-0.46722	-0.00019805	0.021537	9.1294E-06	-0.44568	-0.00018892	423.89563099649973	61.652	0.65384	62.398	62.172	62.826	0.74503	-0.00089047	-9.9561E-05	NaN	7.0371	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2264900			10309	13780	7214	7277							0.04166819646161457
EEVTKHTY	8	Unmodified	_EEVTKHTY_					0	0	0		ENST00000520776.5_1_17:45405719-45473360:+|nuORF;ENSG00000178852|ENST00000331493|EFCAB13	ENST00000520776.5_1_17:45405719-45473360:+|nuORF	ENST00000520776.5_1_17:45405719-45473360:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	503.9908752441406	2	503.745639	1005.47673	-0.62352	-0.0003141	-3.3241	-0.0016745	-3.9476	-0.0019886	504.24448914648866	27.57	0.30309	28.249	28.098	28.401	0.67857					8	5	2	0	0	0	0.94479	1	9427	9427		8.5933	0	1	1911800			10310	8182	7215	7278	10084	10084					-0.02579413207433845
EEVTKNLQKF	10	Unmodified	_EEVTKNLQKF_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R1	1	412.9590759277344	3	412.559194	1234.65575	0.25976	0.00010717	-0.85724	-0.00035366	-0.59748	-0.00024649	412.5588524713532	33.756	0.45386	33.756	33.547	34.001	0					22	8	3	0	0	0	0.23154	1	11053	11053		46.022	23.247	1	6683600			10311	14788	7216	7279	10085	10085					0.047810513606464156
EEVTKNLQKF	10	Unmodified	_EEVTKNLQKF_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R1	1	618.734619140625	2	618.335153	1234.65575	-0.30177	-0.00018659	0.074575	4.6113E-05	-0.22719	-0.00014048	618.3350441609518	33.749	0.35122	33.749	33.547	33.898	0					14	6	3	0	0	0	0.0083664	1	11068	11068		158.08	83.877	1	4184700			10312	14788	7216	7279	10086	10086					0.047810513606464156
EEVTKNLQKF	10	Unmodified	_EEVTKNLQKF_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R2	2	618.7344360351562	2	618.335153	1234.65575	-0.76902	-0.00047551	-0.10927	-6.7567E-05	-0.87829	-0.00054308	618.3351570624751	32.983	0.35726	33.72	33.518	33.876	0.73692					10	6	2	0	0	0	0.00052264	1	11804	11804		182.24	102.64	1	3454000			10313	14788	7216	7279	10087	10087					0.047810513606464156
EEVTLQTGI	9	Unmodified	_EEVTLQTGI_					0	0	0		ENSG00000116984|ENST00000366577|MTR;nc|ENSG00000116984|Q99707-2|MTR	ENSG00000116984|ENST00000366577|MTR	ENSG00000116984|ENST00000366577|MTR	MULTI-MSMS	A375_MHC_IP_R2	2	495.6612854003906	2	495.261122	988.507691	-0.45768	-0.00022667	0.40387	0.00020002	-0.053812	-2.6651E-05	495.2612916768643	73.93	0.66233	74.667	74.296	74.958	0.73752					16	12	2	0	0	0	0.43185	1	28077	28077		23.148	0	1	1062000			10314	3448	7217	7280	10088	10088					0.012977401068042127
EEVTLQTGI	9	Unmodified	_EEVTLQTGI_					0	0	0		ENSG00000116984|ENST00000366577|MTR;nc|ENSG00000116984|Q99707-2|MTR	ENSG00000116984|ENST00000366577|MTR	ENSG00000116984|ENST00000366577|MTR	MULTI-MATCH	A375_MHC_IP_R1	1		2	495.261122	988.507691	-0.37379	-0.00018513	-0.095421	-4.7259E-05	-0.46922	-0.00023238	495.261114979711	74.579	0.50736	74.579	74.298	74.805	0	-0.04438	-0.00030738	NaN	23.148	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	874420			10315	3448	7217	7280							0.012977401068042127
EEVTPQHRLW	10	Unmodified	_EEVTPQHRLW_					0	0	0		ENSG00000144589|ENST00000456909|STK11IP	ENSG00000144589|ENST00000456909|STK11IP	ENSG00000144589|ENST00000456909|STK11IP	MULTI-MSMS	A375_MHC_IP_R1	1	432.6226806640625	3	432.222805	1293.64658	0.012119	5.2383E-06	-0.61885	-0.00026748	-0.60673	-0.00026224	432.2223842981453	42.69	0.70843	42.69	42.183	42.891	0					21	13	3	0	0	0	0.26272	1	14797	14797		42.835	25.787	1	4280600			10316	5495	7218	7281	10089	10089					0.011507027949846815
EEVTPQHRLW	10	Unmodified	_EEVTPQHRLW_					0	0	0		ENSG00000144589|ENST00000456909|STK11IP	ENSG00000144589|ENST00000456909|STK11IP	ENSG00000144589|ENST00000456909|STK11IP	MULTI-MSMS	A375_MHC_IP_R2	2	432.62237548828125	3	432.222805	1293.64658	-0.23926	-0.00010341	-0.47229	-0.00020413	-0.71155	-0.00030755	432.22244142328896	41.858	0.91827	42.633	42.149	43.067	0.77451					28	17	3	0	0	0	0.39901	1	15600	15600		34.222	20.703	1	5331000			10317	5495	7218	7281	10090	10090					0.011507027949846815
EEVTPQVTI	9	Unmodified	_EEVTPQVTI_					0	0	0			REV__ENSG00000099715|ENST00000698851|PCDH11Y	REV__ENSG00000099715|ENST00000698851|PCDH11Y	MULTI-SECPEP	A375_MHC_IP_R1	1	507.70806884765625	2	508.268947	1014.52334	-0.35894	-0.00018244	-0.76547	-0.00038907	-1.1244	-0.00057151	508.26835808823733	57.237	0.40828	57.237	56.956	57.364	0					10	7	2	0	0	0	0.60917	1	20452	20452		5.7319	0	1	1366800	+		10318	17021	7219	7282	10091	10091					0.01666026623865946
EEVTQVLY	8	Unmodified	_EEVTQVLY_					0	0	0			REV__nc|ENSG00000146021|Q9UH77-3|KLHL3	REV__nc|ENSG00000146021|Q9UH77-3|KLHL3	MULTI-SECPEP	A375_MHC_IP_R2	2	491.15020751953125	2	490.75039	979.486227	-0.52504	-0.00025766	0.081148	3.9823E-05	-0.44389	-0.00021784	490.7503672700631	76.078	0.86425	76.819	76.487	77.352	0.74052					49	16	4	0	0	0	0.14819	1	28824	28824		89.427	4.1548	1	41636000	+		10319	19513	7220	7283	10092	10092					-0.004336449219181304
EEVTTELEEY	10	Unmodified	_EEVTTELEEY_					0	0	0		ENST00000610091.1_1:142697815-142699322:-|nuORF;ENST00000354752.5_1_9:99922575-99942308:-|nuORF	ENST00000610091.1_1:142697815-142699322:-|nuORF	ENST00000610091.1_1:142697815-142699322:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	621.1953735351562	2	621.274623	1240.53469	-0.66892	-0.00041558	0.86837	0.0005395	0.19945	0.00012391	621.2753404451047	73.41	0.66338	74.145	73.836	74.499	0.7354					27	12	3	0	0	0	0.71118	1	27964	27964		7.2892	0	1	5845900			10320	10944	7221	7284	10093	10093					-0.07595240863315667
EEVTWFLPVD	10	Unmodified	_EEVTWFLPVD_					0	0	0		ENST00000433644.2_2_9:98178049-98189049:-|nuORF	ENST00000433644.2_2_9:98178049-98189049:-|nuORF	ENST00000433644.2_2_9:98178049-98189049:-|nuORF	MSMS	A375_MHC_IP_R2	2	617.7216186523438	2	617.803154	1233.59175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.542	1	60.289	59.789	60.789	0.74714								0	0	0	0.13504	1	22533	22533		32.305	0	1				10321	11895	7222	7285	10094	10094					-0.015697287963121198
EEVVLRIIF	9	Unmodified	_EEVVLRIIF_					0	0	0			REV__ENST00000462237.5_1_X:74514443-74523343:+|nuORF	REV__ENST00000462237.5_1_X:74514443-74523343:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	558.9163818359375	2	559.334424	1116.6543	-0.68049	-0.00038062	-0.73459	-0.00041088	-1.4151	-0.0007915	559.8362099174708	74.144	0.66143	74.882	74.348	75.009	0.73752					15	12	2	0	0	0	0.77834	1	28171	28171		4.756	0	1	1306000	+		10322	24985	7223	7286	10095	10095					0.10063462062544204
EEVVQEYQVR	10	Unmodified	_EEVVQEYQVR_					0	0	0		nc|ENSG00000183718|Q96A61-2|TRIM52	nc|ENSG00000183718|Q96A61-2|TRIM52	nc|ENSG00000183718|Q96A61-2|TRIM52	MULTI-SECPEP	A375_MHC_IP_R1	1	427.2820129394531	3	426.882337	1277.62518	-0.0074629	-3.1858E-06	-0.25143	-0.00010733	-0.25889	-0.00011052	426.8822862783049	20.51	0.96695	20.51	20.03	20.997	0					38	18	3	0	0	0	0.7212	1	5259	5259		34.222	0	1	16686000			10323	14809	7224	7287	10096	10096					-0.0025272702439451677
EEVVTFNHF	9	Unmodified	_EEVVTFNHF_					0	0	0		nc|ENSG00000138311|Q70YC5-2|ZNF365;ENSG00000138311|ENST00000395254|ZNF365;nc|ENSG00000138311|Q70YC5-4|ZNF365;nc|ENSG00000138311|Q70YC5-3|ZNF365	nc|ENSG00000138311|Q70YC5-2|ZNF365	nc|ENSG00000138311|Q70YC5-2|ZNF365	MULTI-SECPEP	A375_MHC_IP_R1	1	561.6668090820312	2	561.266739	1120.51892	-0.35677	-0.00020024	-0.34202	-0.00019196	-0.69878	-0.0003922	561.2662911060014	72.591	0.75999	72.591	72.22	72.98	0					21	14	2	0	0	0	0.034037	1	26459	26459		99.799	45.025	1	1793200			10324	4977	7225	7288	10097	10097					-0.03651437799044288
EEVVTFNHF	9	Unmodified	_EEVVTFNHF_					0	0	0		nc|ENSG00000138311|Q70YC5-2|ZNF365;ENSG00000138311|ENST00000395254|ZNF365;nc|ENSG00000138311|Q70YC5-4|ZNF365;nc|ENSG00000138311|Q70YC5-3|ZNF365	nc|ENSG00000138311|Q70YC5-2|ZNF365	nc|ENSG00000138311|Q70YC5-2|ZNF365	MULTI-MSMS	A375_MHC_IP_R2	2	561.6658325195312	2	561.266739	1120.51892	-0.8555	-0.00048016	-0.5647	-0.00031695	-1.4202	-0.00079711	561.2660925530698	72.022	0.85878	72.757	72.264	73.122	0.73421					24	16	3	0	0	0	0.015701	1	27312	27312		88.954	42.933	1	2487000			10325	4977	7225	7288	10098	10098					-0.03651437799044288
EEVVTLDEETL	11	Unmodified	_EEVVTLDEETL_					0	0	0		nc|ENSG00000107731|Q8IZJ1-2|UNC5B;ENSG00000107731|ENST00000335350|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	MULTI-SECPEP	A375_MHC_IP_R1	1	639.2116088867188	2	638.811373	1275.60819	-0.9151	-0.00058458	1.5227	0.00097274	0.60764	0.00038817	638.8123118496941	32.56	0.55374	32.56	32.333	32.887	0					18	10	2	0	0	0	0.84606	1	10565	10565		27.629	27.629	1	3606200			10326	2752	7226	7289	10099	10099					-0.018586924208420896
EEVWHPAF	8	Unmodified	_EEVWHPAF_					0	0	0		CHRDL2|p.G262E|1|0.38|ENSG00000054938|chr11:74703466-74703466|C/T|missense_variant	CHRDL2|p.G262E|1|0.38|ENSG00000054938|chr11:74703466-74703466|C/T|missense_variant	CHRDL2|p.G262E|1|0.38|ENSG00000054938|chr11:74703466-74703466|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	507.97998046875	2	507.737617	1013.46068	-0.89499	-0.00045442	0.093282	4.7363E-05	-0.80171	-0.00040706	507.7379913560253	54.958	0.30627	55.709	55.473	55.779	0.75075					7	5	2	0	0	0	0.90224	1	20709	20709		8.5933	0	1	520030			10327	515	7227	7290	10100	10100					-0.04551074653670639
EEVWKKRKRKE	11	Unmodified	_EEVWKKRKRKE_					0	0	0		ENST00000597112.5_1_19:53589508-53594680:-|nuORF;ENST00000602095.5_1_19:53589338-53594892:-|nuORF	ENST00000597112.5_1_19:53589508-53594680:-|nuORF	ENST00000597112.5_1_19:53589508-53594680:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	379.93255615234375	4	379.724313	1514.86814	0.021267	8.0756E-06	0.0050996	1.9365E-06	0.026367	1.0012E-05	379.97500882189814	26.14	0.45696	26.14	25.966	26.423	0					21	8	4	0	0	0	0.73795	2	7736	7736;7807		1.3296	0.82369	1	6668000			10328	13844	7228	7291	10101;10102	10101					0.13130562491301134
EEVWKKRKRKE	11	Unmodified	_EEVWKKRKRKE_					0	0	0		ENST00000597112.5_1_19:53589508-53594680:-|nuORF;ENST00000602095.5_1_19:53589338-53594892:-|nuORF	ENST00000597112.5_1_19:53589508-53594680:-|nuORF	ENST00000597112.5_1_19:53589508-53594680:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	379.9324035644531	4	379.724313	1514.86814	-0.39132	-0.00014859	-0.090488	-3.4361E-05	-0.4818	-0.00018295	379.72430147359574	25.374	0.61159	26.018	25.77	26.382	0.64368					24	11	3	0	0	0	0.73795	2	8541	8541;8584		1.3296	0.82369	1	5730800			10329	13844	7228	7291	10103;10104	10103					0.13130562491301134
EEVWRMEI	8	Unmodified	_EEVWRMEI_					0	0	0		nc|ENSG00000115107|Q658P3-4|STEAP3;nc|ENSG00000115107|Q658P3-3|STEAP3;nc|ENSG00000115107|Q658P3|STEAP3;ENSG00000115107|ENST00000393110|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6613159179688	2	546.263142	1090.51173	-0.54153	-0.00029582	-1.417	-0.00077406	-1.9585	-0.0010699	546.2618366250051	73.477	0.25358	73.477	73.386	73.64	0					9	4	3	0	0	0	0.96266	1	26803	26803		7.2892	0	1	1804200			10330	3269	7229	7292	10105	10105					-0.02990493671131844
EEVYAGSHQY	10	Unmodified	_EEVYAGSHQY_					0	0	0		ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	MULTI-MSMS	A375_MHC_IP_R1	1	592.156494140625	2	591.756735	1181.49892	-0.43994	-0.00026034	0.027292	1.615E-05	-0.41264	-0.00024419	591.7567817529398	27.559	0.6065	27.559	27.28	27.887	0					36	11	4	0	0	0	4.0434E-07	1	8354	8354		203.64	156.04	1	47268000			10331	8439	7230	7293	10106	10106					-0.0845723352965706
EEVYAGSHQY	10	Unmodified	_EEVYAGSHQY_					0	0	0		ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	MULTI-MSMS	A375_MHC_IP_R2	2	592.1567993164062	2	591.756735	1181.49892	-0.68288	-0.0004041	0.24171	0.00014303	-0.44117	-0.00026107	591.7568841745301	26.987	0.61396	27.648	27.466	28.08	0.66052					36	11	4	0	0	0	4.0434E-07	1	9159	9159		203.64	155.89	1	46073000			10332	8439	7230	7293	10107	10107					-0.0845723352965706
EEVYFRLNE	9	Unmodified	_EEVYFRLNE_					0	0	0			REV__PGK2|p.H125Y|2|0.46|ENSG00000170950|chr6:49786815-49786815|G/A|missense_variant	REV__PGK2|p.H125Y|2|0.46|ENSG00000170950|chr6:49786815-49786815|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	599.6904907226562	2	599.790578	1197.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.5	1	108.5	108	109	0								0	0	0	0.15386	1	39800	39800		21.747	0	1		+		10333	27771	7231	7294	10108	10108					-0.024277835988414154
EEVYRTQVVEK	11	Unmodified	_EEVYRTQVVEK_					0	0	0		ENSG00000155903|ENST00000286364|RASA2;nc|ENSG00000155903|Q15283|RASA2;RASA2|p.I248Lfs*4|1|0.61|ENSG00000155903|chr3:141558943-141558943|A/-|frameshift_variant;RASA2|p.L422*|1|0.32|ENSG00000155903|chr3:141572703-141572703|T/-|frameshift_variant	ENSG00000155903|ENST00000286364|RASA2	ENSG00000155903|ENST00000286364|RASA2	MULTI-MSMS	A375_MHC_IP_R1	1	460.9768981933594	3	460.577025	1378.70924	0.12465	5.7411E-05	-0.28002	-0.00012897	-0.15537	-7.1558E-05	460.5769594729598	44.497	0.45883	44.497	44.318	44.777	0					12	8	2	0	0	0	0.73557	1	15553	15553		3.5927	3.5927	1	7726300			10334	6163	7232	7295	10109	10109					0.035038040725112296
EEVYRTQVVEK	11	Unmodified	_EEVYRTQVVEK_					0	0	0		ENSG00000155903|ENST00000286364|RASA2;nc|ENSG00000155903|Q15283|RASA2;RASA2|p.I248Lfs*4|1|0.61|ENSG00000155903|chr3:141558943-141558943|A/-|frameshift_variant;RASA2|p.L422*|1|0.32|ENSG00000155903|chr3:141572703-141572703|T/-|frameshift_variant	ENSG00000155903|ENST00000286364|RASA2	ENSG00000155903|ENST00000286364|RASA2	MULTI-MSMS	A375_MHC_IP_R2	2	460.9769287109375	3	460.577025	1378.70924	-0.2324	-0.00010704	-0.21853	-0.00010065	-0.45094	-0.00020769	460.5769434375083	43.767	0.4538	44.536	44.278	44.732	0.76909					15	8	2	0	0	0	0.72773	1	16326	16326		11.065	2.3135	1	6482500			10335	6163	7232	7295	10110	10110					0.035038040725112296
EEWAKTYDQ	9	Unmodified	_EEWAKTYDQ_					0	0	0			REV__nc|ENSG00000088247|Q92945|KHSRP	REV__nc|ENSG00000088247|Q92945|KHSRP	MULTI-MSMS	A375_MHC_IP_R2	2	585.6586303710938	2	585.259111	1168.50367	-0.63794	-0.00037336	-0.16232	-9.4999E-05	-0.80026	-0.00046836	585.2590025940372	62.278	0.50674	63.021	62.724	63.23	0.74263					14	9	2	0	0	0	0.53367	1	23671	23671		18.146	0	1	1581300	+		10336	16881	7233	7296	10111	10111					-0.07384349386893518
EEWARSDRW	9	Unmodified	_EEWARSDRW_					0	0	0			REV__nc|ENSG00000121903|P17040-4|ZSCAN20	REV__nc|ENSG00000121903|P17040-4|ZSCAN20	MULTI-MSMS	A375_MHC_IP_R1	1	617.6761474609375	2	617.783619	1233.55268	-0.22209	-0.0001372	-2.7782	-0.0017164	-3.0003	-0.0018536	617.7791450693786	79.121	0.55952	79.121	78.807	79.367	0					34	10	5	0	0	0	0.69674	1	28766	28766		7.2892	0.56607	1	2819100	+		10337	18177	7234	7297	10112	10112					-0.05475016307286751
EEWCNKVLLY	10	Unmodified	_EEWCNKVLLY_					0	0	0			REV__ENSG00000070019|ENST00000261170|GUCY2C	REV__ENSG00000070019|ENST00000261170|GUCY2C	MSMS	A375_MHC_IP_R1	1	648.7167358398438	2	648.818281	1295.62201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.454	1	67.454	66.954	67.954	0								0	0	0	0.15308	1	24444	24444		10.824	1.4408	1		+		10338	16563	7235	7298	10113	10113					-0.01397693402736877
EEWDKNKSAF	10	Unmodified	_EEWDKNKSAF_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MULTI-MSMS	A375_MHC_IP_R1	1	418.931396484375	3	418.531415	1252.57242	-0.095923	-4.0147E-05	-0.12707	-5.3183E-05	-0.22299	-9.333E-05	418.53142291037955	32.659	0.40278	32.659	32.434	32.836	0					17	7	3	0	0	0	0.49952	1	10576	10576		28.234	20.757	1	4659200			10339	3137	7236	7299	10114	10114					-0.04376685087186161
EEWDKNKSAF	10	Unmodified	_EEWDKNKSAF_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MULTI-MSMS	A375_MHC_IP_R1	1	628.1942138671875	2	627.293485	1252.57242	-0.84915	-0.00053267	0.194	0.00012169	-0.65515	-0.00041097	627.2934537563981	32.638	0.30088	32.638	32.485	32.785	0					11	5	3	0	0	0	0.24209	1	10590	10590		51.415	35.266	1	2793800			10340	3137	7236	7299	10115	10115					-0.04376685087186161
EEWDKNKSAF	10	Unmodified	_EEWDKNKSAF_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MULTI-MSMS	A375_MHC_IP_R2	2	418.931396484375	3	418.531415	1252.57242	-0.07361	-3.0808E-05	0.1456	6.0939E-05	0.071992	3.0131E-05	418.5313691020781	31.976	0.40435	32.713	32.504	32.909	0.73692					18	7	3	0	0	0	0.19136	1	11338	11338		50.13	50.13	1	5603800			10341	3137	7236	7299	10116	10116					-0.04376685087186161
EEWDKNKSAF	10	Unmodified	_EEWDKNKSAF_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MULTI-MSMS	A375_MHC_IP_R2	2	627.6934204101562	2	627.293485	1252.57242	-0.83107	-0.00052132	0.84742	0.00053158	0.016354	1.0259E-05	627.2940174231591	31.971	0.35375	32.708	32.555	32.909	0.73692					11	6	3	0	0	0	0.5004	1	11383	11383		32.037	32.037	1	2325900			10342	3137	7236	7299	10117	10117					-0.04376685087186161
EEWDLVQNLV	10	Unmodified	_EEWDLVQNLV_					0	0	0			REV__PCDHB7|p.R202W|1|0.4|ENSG00000113212|chr5:141173439-141173439|C/T|missense_variant	REV__PCDHB7|p.R202W|1|0.4|ENSG00000113212|chr5:141173439-141173439|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	415.94305419921875	3	415.543432	1243.60847	0.50766	0.00021096	-0.69589	-0.00028917	-0.18823	-7.8218E-05	415.5423648481322	42.887	0.71268	42.887	42.638	43.351	0					36	13	4	0	0	0	0.85226	1	14884	14884		12.873	0	1	3430900	+		10343	27737	7237	7300	10118	10118					-0.003592279103486362
EEWEAEFQRY	10	Unmodified	_EEWEAEFQRY_					0	0	0		nc|ENSG00000014919|Q7KZN9-2|COX15;ENSG00000014919|ENST00000016171|COX15	nc|ENSG00000014919|Q7KZN9-2|COX15	nc|ENSG00000014919|Q7KZN9-2|COX15	MULTI-MSMS	A375_MHC_IP_R1	1	694.2009887695312	2	693.801674	1385.58879	-0.62627	-0.00043451	-0.016002	-1.1102E-05	-0.64227	-0.00044561	693.8015100435787	75.621	0.80548	75.621	75.211	76.017	0					32	15	3	0	0	0	1.2413E-10	1	27522	27522		218.2	178.25	1	11065000			10344	1032	7238	7301	10119	10119					-0.08857603921114787
EEWEAEFQRY	10	Unmodified	_EEWEAEFQRY_					0	0	0		nc|ENSG00000014919|Q7KZN9-2|COX15;ENSG00000014919|ENST00000016171|COX15	nc|ENSG00000014919|Q7KZN9-2|COX15	nc|ENSG00000014919|Q7KZN9-2|COX15	MULTI-MSMS	A375_MHC_IP_R2	2	694.776611328125	2	693.801674	1385.58879	-0.7309	-0.0005071	-0.11211	-7.7782E-05	-0.84301	-0.00058488	693.8014225734199	75.127	0.76051	75.865	75.519	76.279	0.73752					41	14	4	0	0	0	0.0038254	1	28468	28468		99.755	91.01	1	11866000			10345	1032	7238	7301	10120	10120					-0.08857603921114787
EEWISDKTRF	10	Unmodified	_EEWISDKTRF_					0	0	0		nc|ENSG00000023228|P28331-3|NDUFS1;nc|ENSG00000023228|P28331-4|NDUFS1;nc|ENSG00000023228|P28331-5|NDUFS1;ENSG00000023228|ENST00000233190|NDUFS1;nc|ENSG00000023228|P28331-2|NDUFS1	nc|ENSG00000023228|P28331-3|NDUFS1	nc|ENSG00000023228|P28331-3|NDUFS1	MULTI-MSMS	A375_MHC_IP_R1	1	437.9503479003906	3	437.550698	1309.63027	0.031812	1.3919E-05	-0.09689	-4.2394E-05	-0.065078	-2.8475E-05	437.5506584738699	53.859	0.40649	53.859	53.656	54.063	0					12	7	2	0	0	0	0.6806	1	19237	19237		14.838	7.8008	1	1823500			10346	1074	7239	7302	10121	10121					-0.012164231617816768
EEWKGSETY	9	Unmodified	_EEWKGSETY_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;ENST00000485862.5_1_9:130928478-130929503:-|nuORF;ENST00000461765.5_1_9:130928478-130929943:-|nuORF	nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-SECPEP	A375_MHC_IP_R1	1	565.145751953125	2	564.745836	1127.47712	-0.35034	-0.00019785	0.16857	9.5198E-05	-0.18177	-0.00010266	564.7458613905093	31.642	0.66087	31.642	31.363	32.024	0					39	12	4	0	0	0	0.042716	1	10130	10130		96.367	46.434	1	23538000			10347	5734	7240	7303	10122	10122					-0.08152038278217333
EEWKGSETY	9	Unmodified	_EEWKGSETY_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;ENST00000485862.5_1_9:130928478-130929503:-|nuORF;ENST00000461765.5_1_9:130928478-130929943:-|nuORF	nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-SECPEP	A375_MHC_IP_R2	2	564.1619262695312	2	564.745836	1127.47712	-0.50463	-0.00028499	-0.0739	-4.1734E-05	-0.57853	-0.00032672	564.7457432496926	31.031	0.55983	31.749	31.517	32.077	0.71857					34	10	4	0	0	0	0.036758	1	10997	10997		99.755	49.822	1	20414000			10348	5734	7240	7303	10123	10123					-0.08152038278217333
EEWKKNVKI	9	Unmodified	_EEWKKNVKI_					0	0	0			REV__tr|U7SPG6|U7SPG6_FUSNURIPmetalloproteaseRsePOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01730PE=3SV=1	REV__tr|U7SPG6|U7SPG6_FUSNURIPmetalloproteaseRsePOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01730PE=3SV=1	MSMS	A375_MHC_IP_R1	1	587.2324829101562	2	587.334956	1172.65536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.41	1	51.41	50.91	51.91	0								0	0	0	0.15486	1	18248	18248		11.64	1.5664	1		+		10349	28359	7241	7304	10124	10124					0.07593676431474705
EEWKLLLHLIQ	11	Unmodified	_EEWKLLLHLIQ_					0	0	0		ENSG00000110756|ENST00000349215|HPS5;nc|ENSG00000110756|Q9UPZ3-2|HPS5;ENST00000352460.7_1_11:18303495-18317646:-|nuORF	ENSG00000110756|ENST00000349215|HPS5	ENSG00000110756|ENST00000349215|HPS5	MSMS	A375_MHC_IP_R2	2	711.4105224609375	2	711.411195	1420.80784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.8	1	138.86	138.36	139.36	0.059906								0	0	0	0.16334	1	54410	54410		1.3295	0.25807	1				10350	2946	7242	7305	10125	10125					0.11426452108253216
EEWKSSTPNY	10	Unmodified	_EEWKSSTPNY_					0	0	0		TOP2A|p.H605Y|1|0.2|ENSG00000131747|chr17:40406614-40406614|G/A|missense_variant	TOP2A|p.H605Y|1|0.2|ENSG00000131747|chr17:40406614-40406614|G/A|missense_variant	TOP2A|p.H605Y|1|0.2|ENSG00000131747|chr17:40406614-40406614|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	621.177734375	2	620.777667	1239.54078	-0.34893	-0.00021661	-0.14811	-9.1943E-05	-0.49704	-0.00030855	620.7774265230439	38.481	0.76524	38.481	38.268	39.033	0					24	14	2	0	0	0	0.39901	1	13108	13108		47.749	7.799	1	3248900			10351	29376	7243	7306	10126	10126					-0.06940677841134857
EEWLMHVMGSP	11	Unmodified	_EEWLMHVMGSP_					0	0	0			REV__ENST00000265440.11_2_7:115670740-115670788:-|nuORF	REV__ENST00000265440.11_2_7:115670740-115670788:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	659.1951293945312	2	658.294116	1314.57368	-0.37762	-0.00024859	1.2197	0.00080295	0.84213	0.00055437	658.79566588854	56.179	0.50647	56.179	55.941	56.447	0					27	9	4	0	0	0	0.72515	1	20145	20145		17.113	6.289	1	3550500	+		10352	23251	7244	7307	10127	10127					-0.0710251031430289
EEWLPRELW	9	Unmodified	_EEWLPRELW_					0	0	0		ENST00000561862.5_1_16:2089927-2090351:-|nuORF;ENST00000562951.5_1_16:2089927-2094062:-|nuORF;ENST00000567727.5_1_16:2089927-2093790:-|nuORF;ENST00000561841.1_1_16:2089927-2093675:-|nuORF;ENST00000565406.5_1_16:2089927-2094819:-|nuORF;nc|ENSG00000065057|P78549-3|NTHL1;ENSG00000065057|ENST00000651570|NTHL1;nc|ENSG00000065057|P78549|NTHL1	ENST00000561862.5_1_16:2089927-2090351:-|nuORF	ENST00000561862.5_1_16:2089927-2090351:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	629.7163696289062	2	629.316763	1256.61897	-0.184	-0.0001158	0.076344	4.8045E-05	-0.10766	-6.7751E-05	629.3165733238308	115.05	0.75863	115.05	114.67	115.43	0					32	14	3	0	0	0	0.0098085	1	42176	42176		114.2	66.453	1	8501800			10353	1368	7245	7308	10128	10128					0.0009279953474106151
EEWLPRELW	9	Unmodified	_EEWLPRELW_					0	0	0		ENST00000561862.5_1_16:2089927-2090351:-|nuORF;ENST00000562951.5_1_16:2089927-2094062:-|nuORF;ENST00000567727.5_1_16:2089927-2093790:-|nuORF;ENST00000561841.1_1_16:2089927-2093675:-|nuORF;ENST00000565406.5_1_16:2089927-2094819:-|nuORF;nc|ENSG00000065057|P78549-3|NTHL1;ENSG00000065057|ENST00000651570|NTHL1;nc|ENSG00000065057|P78549|NTHL1	ENST00000561862.5_1_16:2089927-2090351:-|nuORF	ENST00000561862.5_1_16:2089927-2090351:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	629.7161865234375	2	629.316763	1256.61897	-0.61297	-0.00038575	0.17271	0.00010869	-0.44026	-0.00027707	629.3166908119871	114.3	0.80988	115.01	114.63	115.44	0.70985					35	15	4	0	0	0	0.0096896	2	43070	43070;43175		110.67	62.926	1	11661000			10354	1368	7245	7308	10129;10130	10129					0.0009279953474106151
EEWMSDLDDL	10	Unmodified	_EEWMSDLDDL_					0	0	0		ENSG00000161021|ENST00000292599|MAML1	ENSG00000161021|ENST00000292599|MAML1	ENSG00000161021|ENST00000292599|MAML1	MSMS	A375_MHC_IP_R2	2	626.6934814453125	2	626.755543	1251.49653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.894	1	79.639	79.139	80.139	0.74474								0	0	0	0.15308	1	29944	29944		10.824	1.4408	1				10355	6460	7246	7309	10131	10131					-0.11915450049627907
EEWNDPPAVKW	11	Unmodified	_EEWNDPPAVKW_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	A375_MHC_IP_R1	1	686.3267211914062	2	685.822409	1369.63027	-0.53102	-0.00036418	-0.11408	-7.8237E-05	-0.6451	-0.00044242	685.8221874304443	82.824	0.55399	82.824	82.571	83.125	0					19	10	3	0	0	0	0.016131	2	30265	30265;30380		89.609	66.872	1	3896800			10356	5898	7247	7310	10132;10133	10132					-0.039764231617937185
EEWNDPPAVKW	11	Unmodified	_EEWNDPPAVKW_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	A375_MHC_IP_R2	2	686.2220458984375	2	685.822409	1369.63027	-0.69446	-0.00047628	0.47912	0.00032859	-0.21534	-0.00014768	685.82260162692	82.288	0.50989	83.031	82.787	83.297	0.74293					20	9	3	0	0	0	0.0014401	1	31245	31245		98.73	69.648	1	2949000			10357	5898	7247	7310	10134	10134					-0.039764231617937185
EEWPNPPTL	9	Unmodified	_EEWPNPPTL_					0	0	0		ENSG00000113194|ENST00000261942|FAF2	ENSG00000113194|ENST00000261942|FAF2	ENSG00000113194|ENST00000261942|FAF2	MULTI-SECPEP	A375_MHC_IP_R1	1	542.1607666015625	2	541.761289	1081.50803	-0.59006	-0.00031967	0.89296	0.00048377	0.3029	0.0001641	541.7612284457379	100.34	0.91129	100.34	100.03	100.94	0					25	17	3	0	0	0	0.059859	1	36896	36896		81.89	49.773	1	1337100			10358	3130	7248	7311	10135	10135					-0.02946840173331111
EEWPNPPTL	9	Unmodified	_EEWPNPPTL_					0	0	0		ENSG00000113194|ENST00000261942|FAF2	ENSG00000113194|ENST00000261942|FAF2	ENSG00000113194|ENST00000261942|FAF2	MULTI-MATCH	A375_MHC_IP_R2	2		2	541.761289	1081.50803	-0.58629	-0.00031763	-0.34986	-0.00018954	-0.93614	-0.00050717	541.7613712022893	99.61	0.76187	100.37	100.02	100.78	0.76278	0.014017	-0.00056878	NaN	81.89	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1041000			10359	3130	7248	7311							-0.02946840173331111
EEWQKELY	8	Unmodified	_EEWQKELY_					0	0	0		ENSG00000197024|ENST00000475153|ZNF398	ENSG00000197024|ENST00000475153|ZNF398	ENSG00000197024|ENST00000475153|ZNF398	MULTI-MSMS	A375_MHC_IP_R2	2	563.2371826171875	2	562.766571	1123.51859	-0.87802	-0.00049412	1.2378	0.00069662	0.35982	0.00020249	563.268148888927	56.482	0.45894	57.232	56.898	57.356	0.75015					11	8	2	0	0	0	0.36021	1	21344	21344		54.774	16.8	1	1078300			10360	9106	7249	7312	10136	10136					-0.03822857518912315
EEWQLLIYQI	10	Unmodified	_EEWQLLIYQI_					0	0	0			REV__ENST00000515226.5_1_5:71524027-71524234:-|nuORF	REV__ENST00000515226.5_1_5:71524027-71524234:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	445.5972900390625	3	445.571211	1333.6918	-0.3385	-0.00015083	0.15601	6.9513E-05	-0.18249	-8.1314E-05	445.9052163472423	23.742	0.30469	23.742	23.533	23.838	0					8	5	3	0	0	0	0.92227	1	6504	6504		7.9454	3.2295	1	1166700	+		10361	25660	7250	7313	10137	10137					0.038305085375441195
EEWQQLESAQ	10	Unmodified	_EEWQQLESAQ_					0	0	0		ZNF71|p.P33S|1|0.28|ENSG00000197951|chr19:56621384-56621384|C/T|missense_variant	ZNF71|p.P33S|1|0.28|ENSG00000197951|chr19:56621384-56621384|C/T|missense_variant	ZNF71|p.P33S|1|0.28|ENSG00000197951|chr19:56621384-56621384|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	624.679443359375	2	624.280574	1246.5466	-1.0322	-0.0006444	-0.39886	-0.000249	-1.4311	-0.0008934	624.2803364952892	24.115	0.40723	24.759	24.602	25.009	0.64368					9	7	2	0	0	0	0.91909	1	7903	7903		2.9952	0	1	2275600			10362	30240	7251	7314	10138	10138					-0.06681579329483611
EEWREAQQGF	10	Unmodified	_EEWREAQQGF_					0	0	0		nc|ENSG00000127511|O75182|SIN3B;ENSG00000127511|ENST00000248054|SIN3B	nc|ENSG00000127511|O75182|SIN3B	nc|ENSG00000127511|O75182|SIN3B	MULTI-MSMS	A375_MHC_IP_R1	1	640.688720703125	2	640.288734	1278.56291	-0.26607	-0.00017036	-0.047981	-3.0722E-05	-0.31405	-0.00020108	640.2887629079128	48.287	0.50621	48.287	48.071	48.577	0					28	9	4	0	0	0	3.2709E-05	1	17011	17011		176.43	126.49	1	7947400			10363	4094	7252	7315	10139	10139					-0.06522453372735981
EEWREAQQGF	10	Unmodified	_EEWREAQQGF_					0	0	0		nc|ENSG00000127511|O75182|SIN3B;ENSG00000127511|ENST00000248054|SIN3B	nc|ENSG00000127511|O75182|SIN3B	nc|ENSG00000127511|O75182|SIN3B	MULTI-MSMS	A375_MHC_IP_R2	2	640.6882934570312	2	640.288734	1278.56291	-0.61021	-0.00039071	0.039102	2.5037E-05	-0.57111	-0.00036568	640.2888011111102	47.71	0.60887	48.472	48.174	48.783	0.76127					25	11	3	0	0	0	3.2709E-05	1	17916	17916		176.43	128.68	1	6302100			10364	4094	7252	7315	10140	10140					-0.06522453372735981
EEWRFARV	8	Unmodified	_EEWRFARV_					0	0	0			REV__ENSG00000111203|ENST00000228799|ITFG2	REV__ENSG00000111203|ENST00000228799|ITFG2	MULTI-MSMS	A375_MHC_IP_R1	1	546.672119140625	2	546.78289	1091.55123	-0.024191	-1.3227E-05	-1.75	-0.0009569	-1.7742	-0.00097012	546.7824736830053	49.169	0.50684	49.169	48.983	49.49	0					33	9	6	0	0	0	0.72761	2	17347	17347;17359		26.341	0.94196	1	13123000	+		10365	17653	7253	7316	10141;10142	10141					0.009113943946204017
EEWRGGDGI	9	Unmodified	_EEWRGGDGI_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-SECPEP	A375_MHC_IP_R2	2	509.22576904296875	2	509.733063	1017.45157	-0.84404	-0.00043023	-0.50165	-0.00025571	-1.3457	-0.00068594	509.73291485236297	39.291	0.45743	40.065	39.812	40.269	0.77451					12	8	2	0	0	0	0.41434	1	14487	14487		39.95	3.9055	1	1178100			10366	5992	7254	7317	10143	10143					-0.056454680099932375
EEWRGGDGI	9	Unmodified	_EEWRGGDGI_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MATCH	A375_MHC_IP_R1	1		2	509.733063	1017.45157	-0.57807	-0.00029466	-0.32153	-0.00016389	-0.8996	-0.00045856	510.2342773749436	40.016	0.35797	40.016	39.845	40.203	0	-0.024593	0.0001281	NaN	39.95	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1481000			10367	5992	7254	7317							-0.056454680099932375
EEWSCQQIW	9	Unmodified	_EEWSCQQIW_					0	0	0		ZNF155|p.E229Afs*9|1|0.33|ENSG00000204920|chr19:43996540-43996559|GAGAGAAACCATTCAAATGT/-|frameshift_variant;ZNF221|p.K504Qfs*3|1|0.23|ENSG00000159905|chr19:43967012-43967019|AAACCTTT/-|frameshift_variant;ENSG00000204920|ENST00000270014|ZNF155;nc|ENSG00000204920|Q12901-2|ZNF155;ENSG00000186026|ENST00000421176|ZNF284;ENSG00000159905|ENST00000587682|ZNF221	ZNF155|p.E229Afs*9|1|0.33|ENSG00000204920|chr19:43996540-43996559|GAGAGAAACCATTCAAATGT/-|frameshift_variant	ZNF155|p.E229Afs*9|1|0.33|ENSG00000204920|chr19:43996540-43996559|GAGAGAAACCATTCAAATGT/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	604.707763671875	2	604.755681	1207.49681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.328	1	71.062	70.562	71.562	0.73421								0	0	0	0.15486	1	26662	26662		13.508	0.97634	1				10368	6390	7255	7318	10144	10144					-0.09863985539118403
EEWSSTHAL	9	Unmodified	_EEWSSTHAL_					0	0	0			REV__ENSG00000163820|ENST00000296137|FYCO1	REV__ENSG00000163820|ENST00000296137|FYCO1	MSMS	A375_MHC_IP_R1	1	530.1954345703125	2	530.240721	1058.46689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.287	1	60.287	59.787	60.787	0								0	0	0	0.14812	1	21704	21704		24.674	5.2349	1		+		10369	20419	7256	7319	10145	10145					-0.06000601212804213
EEWTEPNSF	9	Unmodified	_EEWTEPNSF_					0	0	0			REV__tr|U7STD3|U7STD3_FUSNUElongationfactorPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=efpPE=3SV=1	REV__tr|U7STD3|U7STD3_FUSNUElongationfactorPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=efpPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	569.2185668945312	2	569.738011	1137.46147	-0.37629	-0.00021439	-0.18191	-0.00010364	-0.5582	-0.00031803	569.7378029413235	40.066	0.30401	40.84	40.676	40.98	0.77451					8	5	2	0	0	0	0.77834	1	14817	14817		2.0598	0	1	1111500	+		10370	28476	7257	7320	10146	10146					-0.10176324795293112
EEWTTALRKG	10	Unmodified	_EEWTTALRKG_					0	0	0			REV__ENST00000460159.1_1_6:110746078-110746521:-|nuORF	REV__ENST00000460159.1_1_6:110746078-110746521:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	396.92919921875	3	397.543655	1189.60914	0.080227	3.1894E-05	0.6642	0.00026405	0.74443	0.00029594	397.5439030904048	42.928	0.96537	42.928	42.638	43.603	0					28	18	3	0	0	0	0.9269	1	15061	15061		6.1918	0	1	1425600	+		10371	16100	7258	7321	10147	10147					0.02191611529360671
EEWTTALRKG	10	Unmodified	_EEWTTALRKG_					0	0	0			REV__ENST00000460159.1_1_6:110746078-110746521:-|nuORF	REV__ENST00000460159.1_1_6:110746078-110746521:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	397.543655	1189.60914	-0.037163	-1.4774E-05	-0.20564	-8.1751E-05	-0.2428	-9.6524E-05	397.8780224794991	42.185	0.71441	42.957	42.605	43.319	0.7724	0.014417	-0.00070647	NaN	12.175	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1226800	+		10372	16100	7258	7321							0.02191611529360671
EEWVEQNAL	9	Unmodified	_EEWVEQNAL_					0	0	0			REV__nc|ENSG00000131351|Q9BT25-2|HAUS8	REV__nc|ENSG00000131351|Q9BT25-2|HAUS8	MSMS	A375_MHC_IP_R1	1	559.2189331054688	2	559.261653	1116.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.61	1	108.61	108.11	109.11	0								0	0	0	0.1521	1	39843	39843		18.135	0	1		+		10373	18598	7259	7322	10148	10148					-0.0448404552428201
EEWYKSKF	8	Unmodified	_EEWYKSKF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF;ENSG00000148798|ENST00000369849|INA;VIM|p.A287T|1|0.29|ENSG00000026025|chr10:17233908-17233908|G/A|missense_variant	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R2	2	373.25006103515625	3	372.850197	1115.52876	0.49599	0.00018493	0.031061	1.1581E-05	0.52705	0.00019651	372.85006487897914	42.216	0.51025	42.988	42.809	43.319	0.7724					15	9	2	0	0	0	0.77602	1	15735	15735		10.8	5.9025	1	1931300			10374	1093	7260	7323	10149	10149					-0.024382497936812797
EEYDYRTF	8	Unmodified	_EEYDYRTF_					0	0	0			REV__nc|ENSG00000079739|P36871-2|PGM1	REV__nc|ENSG00000079739|P36871-2|PGM1	MSMS	A375_MHC_IP_R2	2	561.6387329101562	2	561.740554	1121.46655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.119	1	50.873	50.373	51.373	0.75406								0	0	0	0.16876	1	18846	18846		10.183	0	1		+		10375	27121	7261	7324	10150	10150					-0.08932020932684281
EEYDYYGW	8	Unmodified	_EEYDYYGW_					0	0	0		ENSG00000120057|ENST00000266066|SFRP5	ENSG00000120057|ENST00000266066|SFRP5	ENSG00000120057|ENST00000266066|SFRP5	MSMS	A375_MHC_IP_R1	1	562.6555786132812	2	562.714005	1123.41346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.061	1	57.061	56.561	57.561	0								0	0	0	0.16876	1	20458	20458		10.183	2.2732	1				10376	3647	7262	7325	10151	10151					-0.14331398715353316
EEYEARENF	9	Unmodified	_EEYEARENF_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-SECPEP	A375_MHC_IP_R1	1	594.1542358398438	2	593.754192	1185.49383	-0.31086	-0.00018457	0.41492	0.00024636	0.10407	6.1791E-05	593.7545198828116	33.637	0.75994	33.637	33.19	33.95	0					22	14	3	0	0	0	0.019499	1	11026	11026		103.42	53.486	1	3448100			10377	6220	7263	7326	10152	10152					-0.09149537392295315
EEYEARLERY	10	Unmodified	_EEYEARLERY_					0	0	0		nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	MULTI-MSMS	A375_MHC_IP_R2	2	453.6172180175781	3	453.217608	1356.63099	-0.57016	-0.00025841	-0.049122	-2.2263E-05	-0.61929	-0.00028067	453.21766181025504	34.2	0.35793	34.952	34.853	35.211	0.75225					12	6	2	0	0	0	0.54537	1	12388	12388		24.957	3.1576	1	5457100			10378	971	7264	7327	10153	10153					-0.03305628512748626
EEYEDIRQDHY	11	Unmodified	_EEYEDIRQDHY_					0	0	0		ENSG00000116984|ENST00000366577|MTR;nc|ENSG00000116984|Q99707-2|MTR	ENSG00000116984|ENST00000366577|MTR	ENSG00000116984|ENST00000366577|MTR	MSMS	A375_MHC_IP_R1	1	499.44512939453125	3	499.547794	1495.62155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.574	1	34.574	34.074	35.074	0								0	0	0	0.16297	1	11411	11411		1.3296	0.11481	1				10379	3448	7265	7328	10154	10154					-0.10643441588922542
EEYEEKLWQRY	11	Unmodified	_EEYEEKLWQRY_					0	0	0			REV__DUSP22|p.G155E|1|0.19|ENSG00000112679|chr6:348797-348797|G/A|missense_variant	REV__DUSP22|p.G155E|1|0.19|ENSG00000112679|chr6:348797-348797|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	524.982177734375	3	524.915817	1571.72562	-0.81057	-0.00042548	1.6408	0.00086128	0.83023	0.0004358	524.9165495853798	26.624	0.30502	26.624	26.474	26.779	0					8	5	2	0	0	0	0.73636	1	7990	7990		2.8433	0.21205	1	2587800	+		10380	16044	7266	7329	10155	10155					-0.03737114761383964
EEYEEYEEY	9	Unmodified	_EEYEEYEEY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;TTN|p.L14011*|1|0.26|ENSG00000155657|chr2:178618595-178618595|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	A375_MHC_IP_R2	2	641.8034057617188	2	641.735331	1281.45611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.99	1	147.01	146.51	147.51	0.019913								0	0	0	0.15486	1	57213	57213		0.52476	0	1				10381	6151;14694	7267	7330	10156	10156					-0.17336093168410116
EEYERATRY	9	Unmodified	_EEYERATRY_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	609.1828002929688	2	608.783284	1215.55202	-0.4423	-0.00026927	0.14727	8.9657E-05	-0.29503	-0.00017961	608.7833820031907	19.598	0.4072	19.598	19.368	19.776	0					15	7	3	0	0	0	0.49701	1	4902	4902		33.445	33.445	1	9127900			10382	1269;9999	7268	7331	10157	10157					-0.04713855746990703
EEYERATRY	9	Unmodified	_EEYERATRY_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	406.5910339355469	3	406.191282	1215.55202	-0.25203	-0.00010237	-0.54494	-0.00022135	-0.79696	-0.00032372	406.19109655736077	18.955	0.3307	19.559	19.452	19.783	0.60308					11	6	3	0	0	0	0.76106	1	5769	5769		13.615	13.615	1	14368000			10383	1269;9999	7268	7331	10158	10158					-0.04713855746990703
EEYGGQSLNY	10	Unmodified	_EEYGGQSLNY_					0	0	0			REV__ENSG00000171303|ENST00000302909|KCNK3	REV__ENSG00000171303|ENST00000302909|KCNK3	MULTI-MSMS	A375_MHC_IP_R1	1	580.7012939453125	2	580.248743	1158.48293	-0.39455	-0.00022894	2.4475	0.0014202	2.0529	0.0011912	580.2504661868805	41.088	0.30275	41.088	40.963	41.266	0					7	5	2	0	0	0	0.69833	1	14177	14177		13.042	0.51092	1	1053800	+		10384	21056	7269	7332	10159	10159					-0.08996939766575451
EEYGKLQKI	9	Unmodified	_EEYGKLQKI_					0	0	0		ENST00000559016.1_1_15:49426483-49429634:-|nuORF;ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2	ENST00000559016.1_1_15:49426483-49429634:-|nuORF	ENST00000559016.1_1_15:49426483-49429634:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	553.6484985351562	2	554.305864	1106.59717	-1.1376	-0.00063057	0.046054	2.5528E-05	-1.0915	-0.00060504	554.30540231479	28.322	0.25331	29.001	28.858	29.112	0.67857					6	4	2	0	0	0	0.60917	1	9751	9751		19.257	6.2145	1	1085700			10385	7042	7270	7333	10160	10160					0.048139947861727705
EEYHASTKIY	10	Unmodified	_EEYHASTKIY_					0	0	0			REV__ENSG00000273749|ENST00000617928|CYFIP1	REV__ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	A375_MHC_IP_R2	2	621.1953735351562	2	620.79586	1239.57717	-0.99986	-0.00062071	-0.89622	-0.00055637	-1.8961	-0.0011771	620.795160964513	57.906	0.80919	58.655	58.12	58.929	0.74894					25	15	2	0	0	0	0.60385	1	21820	21820		24.021	24.021	1	3395800	+		10386	22953	7271	7334	10161	10161					-0.03303800944422619
EEYHLYKDG	9	Unmodified	_EEYHLYKDG_					0	0	0		ENSG00000167880|ENST00000301607|EVPL;EVPL|p.L1944Sfs*20|1|0.58|ENSG00000167880|chr17:76007376-76007376|C/-|frameshift_variant	ENSG00000167880|ENST00000301607|EVPL	ENSG00000167880|ENST00000301607|EVPL	MULTI-MSMS	A375_MHC_IP_R2	2	577.6614379882812	2	577.261653	1152.50875	-0.31368	-0.00018107	-0.41395	-0.00023896	-0.72763	-0.00042003	577.261288473047	62.362	0.60929	63.105	62.673	63.282	0.74263					17	11	2	0	0	0	0.44024	1	23610	23610		22.736	0	1	2452600			10387	7232	7272	7335	10162	10162					-0.061400455242846874
EEYIHKPKY	9	Unmodified	_EEYIHKPKY_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-SECPEP	A375_MHC_IP_R1	1	403.2765808105469	3	402.876634	1205.60807	-0.10253	-4.1306E-05	0.43935	0.00017701	0.33683	0.0001357	402.876703481912	21.79	0.50787	21.79	21.505	22.013	0					25	9	3	0	0	0	0.46121	1	5731	5731		38.615	24.209	1	5685000			10388	1156	7273	7336	10163	10163					0.013493971604930266
EEYIILPTV	9	Unmodified	_EEYIILPTV_					0	0	0			REV__nc|ENSG00000074603|Q6V1X1-5|DPP8	REV__nc|ENSG00000074603|Q6V1X1-5|DPP8	MULTI-SECPEP	A375_MHC_IP_R1	1	359.6134033203125	3	359.533986	1075.58013	0.2549	9.1644E-05	-0.31264	-0.0001124	-0.05774	-2.0759E-05	359.53406807484	20.561	1.018	20.561	20.232	21.25	0					46	19	3	0	0	0	0.62767	1	5270	5270		11.495	11.495	1	2274800	+		10389	16637	7274	7337	10164	10164					0.04536074180373362
EEYKDCRR	8	Unmodified	_EEYKDCRR_					0	0	0		KCND2|p.R140C|1|0.51|ENSG00000184408|chr7:120275050-120275050|C/T|missense_variant	KCND2|p.R140C|1|0.51|ENSG00000184408|chr7:120275050-120275050|C/T|missense_variant	KCND2|p.R140C|1|0.51|ENSG00000184408|chr7:120275050-120275050|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	550.2551879882812	2	549.753472	1097.49239	-0.73503	-0.00040408	0.22607	0.00012429	-0.50895	-0.0002798	550.2560639631292	66.414	0.45961	66.414	66.224	66.684	0					10	8	2	0	0	0	0.75805	1	24148	24148		18.135	6.4947	1	1743700			10390	14193	7275	7338	10165	10165					-0.05245449962035309
EEYKIRGVL	9	Unmodified	_EEYKIRGVL_					0	0	0		ENSG00000185792|ENST00000332836|NLRP9	ENSG00000185792|ENST00000332836|NLRP9	ENSG00000185792|ENST00000332836|NLRP9	MULTI-MSMS	A375_MHC_IP_R2	2	555.31494140625	2	553.813856	1105.61316	-0.77709	-0.00043036	-0.20314	-0.0001125	-0.98023	-0.00054287	553.8136975975483	70.604	0.45594	71.338	71.149	71.605	0.73421					21	8	4	0	0	0	0.46038	1	26716	26716		21.747	7.8406	1	9184000			10391	8693	7276	7339	10166	10166					0.06457701023077789
EEYKQKIKEY	10	Unmodified	_EEYKQKIKEY_					0	0	0		ENSG00000186591|ENST00000355621|UBE2H;nc|ENSG00000186591|P62256-2|UBE2H	ENSG00000186591|ENST00000355621|UBE2H	ENSG00000186591|ENST00000355621|UBE2H	MULTI-MSMS	A375_MHC_IP_R1	1	453.6380920410156	3	453.23812	1356.69253	-0.37025	-0.00016781	0.031458	1.4258E-05	-0.33879	-0.00015355	453.23826312525216	19.397	0.38484	19.397	19.238	19.623	0					27	7	5	0	0	0	0.011566	1	4797	4797		116.75	79.494	1	37099000			10392	8763	7277	7340	10167	10167					0.028453031865637968
EEYKQKIKEY	10	Unmodified	_EEYKQKIKEY_					0	0	0		ENSG00000186591|ENST00000355621|UBE2H;nc|ENSG00000186591|P62256-2|UBE2H	ENSG00000186591|ENST00000355621|UBE2H	ENSG00000186591|ENST00000355621|UBE2H	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	453.23812	1356.69253	-0.50577	-0.00022923	-0.36968	-0.00016755	-0.87545	-0.00039679	453.238019205864	18.905	0.16035	19.508	19.423	19.583	0.60308	0.055901	-0.00045656	NaN	116.75	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36565000			10393	8763	7277	7340							0.028453031865637968
EEYKSKIQN	9	Unmodified	_EEYKSKIQN_					0	0	0		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MSMS	A375_MHC_IP_R2	2	569.7055053710938	2	569.790578	1137.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.489	1	78.232	77.732	78.732	0.74293								0	0	0	0.1499	1	29425	29425		21.747	1.293	1				10394	7896	7278	7341	10168	10168					0.0033221640117062634
EEYKSQRPV	9	Unmodified	_EEYKSQRPV_					0	0	0		ENSG00000124313|ENST00000642864|IQSEC2	ENSG00000124313|ENST00000642864|IQSEC2	ENSG00000124313|ENST00000642864|IQSEC2	MULTI-SECPEP	A375_MHC_IP_R1	1	568.6741943359375	2	568.290745	1134.56694	-0.34094	-0.00019375	0.0018973	1.0782E-06	-0.33904	-0.00019267	568.2909361509937	54.847	0.40619	54.847	54.619	55.025	0					12	7	2	0	0	0	0.61758	1	19546	19546		17.113	4.8722	1	2142900			10395	3893	7279	7342	10169	10169					0.005036361209931783
EEYLKEYF	8	Unmodified	_EEYLKEYF_					0	0	0			REV__DNAH17|p.S1041F|1|0.72|ENSG00000187775|chr17:78530505-78530505|G/A|missense_variant	REV__DNAH17|p.S1041F|1|0.72|ENSG00000187775|chr17:78530505-78530505|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	373.943603515625	3	374.17809	1119.51244	0.42261	0.00015813	0.078275	2.9289E-05	0.50089	0.00018742	374.1780849137133	28.576	0.35509	28.576	28.39	28.745	0					10	6	2	0	0	0	0.972	1	8819	8819		3.5965	2.0042	1	1344600	+		10396	16009	7280	7343	10170	10170					-0.04253375750431587
EEYLLGMHMH	10	Unmodified	_EEYLLGMHMH_					0	0	0			REV__ENSG00000137473|ENST00000325106|TTC29	REV__ENSG00000137473|ENST00000325106|TTC29	MULTI-MSMS	A375_MHC_IP_R2	2	630.6802978515625	2	630.281008	1258.54746	-0.7764	-0.00048935	-0.37916	-0.00023898	-1.1556	-0.00072833	630.2807518479008	45.863	0.35263	46.629	46.453	46.805	0.76519					11	6	2	0	0	0	0.58828	1	17197	17197		21.747	2.4897	1	2497300	+		10397	19008	7281	7344	10171	10171					-0.07146779485765364
EEYLLGMHMH	10	Unmodified	_EEYLLGMHMH_					0	0	0			REV__ENSG00000137473|ENST00000325106|TTC29	REV__ENSG00000137473|ENST00000325106|TTC29	MULTI-MATCH	A375_MHC_IP_R1	1		2	630.281008	1258.54746	-0.70115	-0.00044192	-0.33247	-0.00020955	-1.0336	-0.00065147	630.2804910064436	46.526	0.35341	46.526	46.345	46.699	0	-0.051086	2.1811E-05	NaN	21.747	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1686700	+		10398	19008	7281	7344							-0.07146779485765364
EEYLLGMHMH	10	Unmodified	_EEYLLGMHMH_					0	0	0			REV__ENSG00000137473|ENST00000325106|TTC29	REV__ENSG00000137473|ENST00000325106|TTC29	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	630.281008	1258.54746	-0.7764	-0.00048935	-0.37916	-0.00023898	-1.1556	-0.00072833	630.2807518479008	45.863	0.35263	46.629	46.453	46.805	0.76519	0.051086	-3.7041E-05	NaN	21.747	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2497300	+		10399	19008	7281	7344							-0.07146779485765364
EEYMNKPTF	9	Oxidation (M)	_EEYM(Oxidation (M))NKPTF_		EEYM(1)NKPTF		EEYM(44)NKPTF	0	0	1		ENSG00000152056|ENST00000396654|AP1S3	ENSG00000152056|ENST00000396654|AP1S3	ENSG00000152056|ENST00000396654|AP1S3	MULTI-MSMS	A375_MHC_IP_R1	1	588.1572265625	2	587.757889	1173.50123	-0.26683	-0.00015683	0.29393	0.00017276	0.027104	1.5931E-05	587.7575784107175	33.966	0.45564	33.966	33.698	34.154	0					26	8	4	0	0	0	0.13845	1	11133	11133		43.772	26.83	1	6478800			10400	5941	7282	7345	10172	10172		318			-0.07858521116213524
EEYMNKPTF	9	Oxidation (M)	_EEYM(Oxidation (M))NKPTF_		EEYM(1)NKPTF		EEYM(58)NKPTF	0	0	1		ENSG00000152056|ENST00000396654|AP1S3	ENSG00000152056|ENST00000396654|AP1S3	ENSG00000152056|ENST00000396654|AP1S3	MULTI-SECPEP	A375_MHC_IP_R2	2	587.1985473632812	2	587.757889	1173.50123	-0.83712	-0.00049202	0.27793	0.00016335	-0.55919	-0.00032867	587.7579579289803	33.265	0.40704	34.017	33.84	34.247	0.75225					12	7	2	0	0	0	0.20451	1	11887	11887		57.722	37.307	1	4672600			10401	5941	7282	7345	10173	10173		318			-0.07858521116213524
EEYMYAYRWIR	11	Unmodified	_EEYMYAYRWIR_					0	0	0		ENSG00000143390|ENST00000452671|RFX5;ENST00000469513.5_1_1:151316885-151317631:-|nuORF	ENSG00000143390|ENST00000452671|RFX5	ENSG00000143390|ENST00000452671|RFX5	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6820678710938	3	527.250254	1578.72893	-1.1089	-0.00058465	-0.86188	-0.00045443	-1.9708	-0.0010391	527.5840605228381	37.064	0.35444	37.835	37.716	38.07	0.7709					9	6	2	0	0	0	1.0011	1	13600	13600		1.3296	0	1	1033900			10402	5382	7283	7346	10174	10174					-0.037281431883911864
EEYNGYDI	8	Unmodified	_EEYNGYDI_					0	0	0			REV__ENST00000471710.2_1_13:61103135-61109406:+|nuORF	REV__ENST00000471710.2_1_13:61103135-61109406:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.69744873046875	2	501.70618	1001.39781	-0.28633	-0.00014365	-0.44888	-0.0002252	-0.7352	-0.00036886	502.20698594141476	92.007	0.60611	92.007	91.756	92.362	0					24	11	3	0	0	0	0.77603	1	33785	33785		9.3474	0	1	1296200	+		10403	16807	7284	7347	10175	10175					-0.10283685232388962
EEYNLRDY	8	Unmodified	_EEYNLRDY_					0	0	0		ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	551.669677734375	2	551.246003	1100.47745	-0.15116	-8.3325E-05	-0.33796	-0.0001863	-0.48912	-0.00026963	551.2457629481079	45.241	1.3669	45.241	44.928	46.295	0					40	26	2	0	0	0	0.71318	1	15911	15911		30.637	1.555	1	29261000			10404	7475	7285	7348	10176	10176					-0.06876618558385417
EEYNLRDY	8	Unmodified	_EEYNLRDY_					0	0	0		ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	ENST00000472163.1_1_3:75263799-75264780:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	551.6691284179688	2	551.246003	1100.47745	-0.79982	-0.0004409	-0.41179	-0.000227	-1.2116	-0.0006679	551.2459184499766	44.495	1.723	45.264	44.38	46.103	0.7691					57	33	3	0	0	0	0.23604	2	16657	16617;16657		64.236	24.279	1	30532000			10405	7475	7285	7348	10177;10178	10178					-0.06876618558385417
EEYPDRIMN	9	Oxidation (M)	_EEYPDRIM(Oxidation (M))N_		EEYPDRIM(1)N		EEYPDRIM(130)N	0	0	1		ENSG00000101162|ENST00000217133|TUBB1;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3;chr16:89921431-89932571|440|11.67|0.7|4.06|+|ENST00000555810|TUBB3,TUBB3;ENST00000404155.1_1_6:3177457-3179994:-|nuORF	ENSG00000101162|ENST00000217133|TUBB1;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;nc|ENSG00000258947|Q13509-2|TUBB3;ENST00000404155.1_1_6:3177457-3179994:-|nuORF	nc|ENSG00000258947|Q13509-2|TUBB3	MULTI-MSMS	A375_MHC_IP_R1	1	592.1578979492188	2	591.75842	1181.50229	-0.52323	-0.00030962	-0.96181	-0.00056916	-1.485	-0.00087878	591.7576117799193	28.113	0.55293	28.113	27.786	28.339	0					17	10	2	0	0	0	0.010044	1	8648	8648		125.04	81.265	1	4798300		+	10406	9924;4872;9016;2260;11580	7286	7349	10179	10179		90;259			-0.08120306747332506
EEYPDRIMN	9	Unmodified	_EEYPDRIMN_					0	0	0		ENSG00000101162|ENST00000217133|TUBB1;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3;chr16:89921431-89932571|440|11.67|0.7|4.06|+|ENST00000555810|TUBB3,TUBB3;ENST00000404155.1_1_6:3177457-3179994:-|nuORF	ENSG00000101162|ENST00000217133|TUBB1;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;nc|ENSG00000258947|Q13509-2|TUBB3;ENST00000404155.1_1_6:3177457-3179994:-|nuORF	nc|ENSG00000258947|Q13509-2|TUBB3	MULTI-MSMS	A375_MHC_IP_R1	1	584.1609497070312	2	583.760963	1165.50737	-0.44028	-0.00025702	0.30748	0.00017949	-0.1328	-7.7524E-05	583.7612658500146	41.088	0.50429	41.088	40.813	41.317	0					13	9	2	0	0	0	0.027818	1	14206	14206		76.825	38.649	1	2521900		+	10407	9924;4872;9016;2260;11580	7286	7350	10180	10180					-0.06876002884700938
EEYPDRIMN	9	Unmodified	_EEYPDRIMN_					0	0	0		ENSG00000101162|ENST00000217133|TUBB1;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3;chr16:89921431-89932571|440|11.67|0.7|4.06|+|ENST00000555810|TUBB3,TUBB3;ENST00000404155.1_1_6:3177457-3179994:-|nuORF	ENSG00000101162|ENST00000217133|TUBB1;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;nc|ENSG00000258947|Q13509-2|TUBB3;ENST00000404155.1_1_6:3177457-3179994:-|nuORF	nc|ENSG00000258947|Q13509-2|TUBB3	MULTI-MATCH	A375_MHC_IP_R2	2		2	583.760963	1165.50737	-0.52386	-0.00030581	-0.24527	-0.00014318	-0.76914	-0.00044899	583.7608347314851	40.501	0.45832	41.276	41.031	41.489	0.77451	0.093801	-0.00032806	NaN	76.825	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2530900		+	10408	9924;4872;9016;2260;11580	7286	7350							-0.06876002884700938
EEYPDRIMNTF	11	Oxidation (M)	_EEYPDRIM(Oxidation (M))NTF_		EEYPDRIM(1)NTF		EEYPDRIM(190)NTF	0	0	1		ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3;chr16:89921431-89932571|440|11.67|0.7|4.06|+|ENST00000555810|TUBB3,TUBB3	ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;nc|ENSG00000258947|Q13509-2|TUBB3	nc|ENSG00000258947|Q13509-2|TUBB3	MULTI-MSMS	A375_MHC_IP_R1	1	716.2162475585938	2	715.816467	1429.61838	-0.59106	-0.00042309	-0.13834	-9.9029E-05	-0.7294	-0.00052212	715.8164083736369	59.299	0.71228	59.299	58.938	59.651	0					44	13	4	0	0	0	2.8124E-15	1	21280	21280		193.01	161.74	1	10863000			10409	9924;9016;4872	7287	7351	10181	10181		259			-0.07924407967288971
EEYPDRIMNTF	11	Oxidation (M)	_EEYPDRIM(Oxidation (M))NTF_		EEYPDRIM(1)NTF		EEYPDRIM(190)NTF	0	0	1		ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3;chr16:89921431-89932571|440|11.67|0.7|4.06|+|ENST00000555810|TUBB3,TUBB3	ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;nc|ENSG00000258947|Q13509-2|TUBB3	nc|ENSG00000258947|Q13509-2|TUBB3	MULTI-MSMS	A375_MHC_IP_R2	2	716.21630859375	2	715.816467	1429.61838	-1.1069	-0.00079233	-0.061496	-4.402E-05	-1.1684	-0.00083635	715.8166035507498	58.646	0.71152	59.395	59.083	59.795	0.74894					43	13	4	0	0	0	2.8124E-15	1	22136	22136		193.01	154.83	1	9403000			10410	9924;9016;4872	7287	7351	10182	10182		259			-0.07924407967288971
EEYPDRIMNTF	11	Unmodified	_EEYPDRIMNTF_					0	0	0		ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3;chr16:89921431-89932571|440|11.67|0.7|4.06|+|ENST00000555810|TUBB3,TUBB3	ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;nc|ENSG00000258947|Q13509-2|TUBB3	nc|ENSG00000258947|Q13509-2|TUBB3	MULTI-MSMS	A375_MHC_IP_R1	1	708.2180786132812	2	707.819009	1413.62347	-0.56715	-0.00040144	-0.26865	-0.00019016	-0.8358	-0.0005916	707.818892736972	81.581	0.75885	81.581	81.202	81.961	0					39	14	4	0	0	0	1.0335E-12	1	29797	29797		218.93	132.6	1	17366000			10411	9924;9016;4872	7287	7352	10183	10183					-0.0668010410468014
EEYPDRIMNTF	11	Unmodified	_EEYPDRIMNTF_					0	0	0		ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3;chr16:89921431-89932571|440|11.67|0.7|4.06|+|ENST00000555810|TUBB3,TUBB3	ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;nc|ENSG00000258947|Q13509-2|TUBB3	nc|ENSG00000258947|Q13509-2|TUBB3	MULTI-SECPEP	A375_MHC_IP_R2	2	708.2186889648438	2	707.819009	1413.62347	-0.83024	-0.00058766	-0.32361	-0.00022905	-1.1538	-0.00081671	707.8188560404582	80.952	0.71382	81.697	81.416	82.13	0.74474					40	13	4	0	0	0	9.8738E-05	1	30705	30705		193.01	116.18	1	17827000			10412	9924;9016;4872	7287	7352	10184	10184					-0.0668010410468014
EEYPKYKELQQ	11	Unmodified	_EEYPKYKELQQ_					0	0	0			REV__ENSG00000075856|ENST00000546815|SART3	REV__ENSG00000075856|ENST00000546815|SART3	MULTI-MSMS	A375_MHC_IP_R1	1	728.8112182617188	2	727.861731	1453.70891	-0.8178	-0.00059524	0.55059	0.00040075	-0.26721	-0.00019449	727.862086298786	133.53	0.25478	133.53	133.41	133.66	0					11	4	3	0	0	0	0.7342	1	51491	51491		4.897	1.31	1	13641000	+		10413	16664	7288	7353	10185	10185					0.00020384352660585137
EEYPLTRAF	9	Unmodified	_EEYPLTRAF_					0	0	0		ENSG00000155561|ENST00000285968|NUP205;ENST00000607647.5_1_7:135282676-135283553:+|nuORF	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	A375_MHC_IP_R1	1	563.6826171875	2	563.282389	1124.55022	-0.36511	-0.00020566	0.81511	0.00045914	0.45001	0.00025348	563.2829610892608	70.653	1.0228	70.653	70.085	71.108	0					37	19	3	0	0	0	0.035419	1	25656	25656		70.332	35.93	1	3229100			10414	6149	7289	7354	10186	10186					-0.007068647649703053
EEYPLTRAF	9	Unmodified	_EEYPLTRAF_					0	0	0		ENSG00000155561|ENST00000285968|NUP205;ENST00000607647.5_1_7:135282676-135283553:+|nuORF	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	A375_MHC_IP_R2	2	563.6821899414062	2	563.282389	1124.55022	-0.44604	-0.00025125	2.1084	0.0011876	1.6624	0.0009364	563.2826607010682	69.949	0.91555	70.683	70.233	71.149	0.73421					50	17	4	0	0	0	0.02331	1	26493	26493		80.676	37.708	1	3992500			10415	6149	7289	7354	10187	10187					-0.007068647649703053
EEYPNKPPT	9	Unmodified	_EEYPNKPPT_					0	0	0		ENSG00000119048|ENST00000265339|UBE2B;ENSG00000077721|ENST00000371558|UBE2A	ENSG00000119048|ENST00000265339|UBE2B;ENSG00000077721|ENST00000371558|UBE2A	ENSG00000119048|ENST00000265339|UBE2B	MULTI-SECPEP	A375_MHC_IP_R1	1	538.1403198242188	2	537.758746	1073.50294	-0.79218	-0.000426	0.50779	0.00027307	-0.2844	-0.00015294	537.7586614850504	24.622	0.55597	24.622	24.296	24.852	0					24	10	3	0	0	0	0.54812	1	7036	7036		24.991	6.8446	1	2763200			10416	3572;1661	7290	7355	10188	10188					-0.030871440359533153
EEYPSVSTL	9	Unmodified	_EEYPSVSTL_					0	0	0		ENSG00000066422|ENST00000312938|ZBTB11	ENSG00000066422|ENST00000312938|ZBTB11	ENSG00000066422|ENST00000312938|ZBTB11	MULTI-SECPEP	A375_MHC_IP_R1	1	1023.9384155273438	1	1024.48333	1023.47606	0.17648	0.0001808	1.4851	0.0015215	1.6616	0.0017023	1024.485121755148	75.458	0.45161	75.458	75.262	75.714	0					13	8	2	0	0	0	0.096726	1	27537	27537		71.134	42.647	1	2194500			10417	1411	7291	7356	10189	10189					-0.03474252647129106
EEYPSVSTL	9	Unmodified	_EEYPSVSTL_					0	0	0		ENSG00000066422|ENST00000312938|ZBTB11	ENSG00000066422|ENST00000312938|ZBTB11	ENSG00000066422|ENST00000312938|ZBTB11	MULTI-MATCH	A375_MHC_IP_R2	2		1	1024.48333	1023.47606	-0.030665	-3.1415E-05	0.29228	0.00029944	0.26162	0.00026802	1024.4843801584918	74.847	0.50659	75.584	75.315	75.822	0.73751	0.063317	-0.00045329	NaN	71.134	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1746300			10418	1411	7291	7356							-0.03474252647129106
EEYQGVIAW	9	Unmodified	_EEYQGVIAW_					0	0	0		ENSG00000268041|ENST00000597630|ERFL;ENST00000596818.1_1_19:42754481-42759151:-|nuORF;ENSG00000105722|ENST00000222329|ERF	ENSG00000268041|ENST00000597630|ERFL	ENSG00000268041|ENST00000597630|ERFL	MULTI-MSMS	A375_MHC_IP_R1	1	548.1610717773438	2	547.761289	1093.50803	-0.36034	-0.00019738	0.14433	7.9056E-05	-0.21601	-0.00011832	547.761318385512	106.42	1.226	106.42	105.86	107.08	0					61	23	4	0	0	0	0.018546	1	39003	39003		85.272	36.926	1	12334000			10419	9969	7292	7357	10190	10190					-0.034988401733244245
EEYQGVIAW	9	Unmodified	_EEYQGVIAW_					0	0	0		ENSG00000268041|ENST00000597630|ERFL;ENST00000596818.1_1_19:42754481-42759151:-|nuORF;ENSG00000105722|ENST00000222329|ERF	ENSG00000268041|ENST00000597630|ERFL	ENSG00000268041|ENST00000597630|ERFL	MULTI-MSMS	A375_MHC_IP_R2	2	548.662109375	2	547.761289	1093.50803	-0.7813	-0.00042797	0.16137	8.8391E-05	-0.61993	-0.00033958	547.7614380767437	105.69	1.1717	106.45	105.97	107.14	0.75977					65	22	4	0	0	0	0.030038	1	39918	39918		74.929	42.624	1	9641000			10420	9969	7292	7357	10191	10191					-0.034988401733244245
EEYQNPHTV	9	Unmodified	_EEYQNPHTV_					0	0	0		nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	MULTI-MSMS	A375_MHC_IP_R1	1	559.1513061523438	2	558.751453	1115.48835	-0.33242	-0.00018574	1.2816	0.00071609	0.94916	0.00053035	558.7524908886772	106.5	0.61516	106.5	106.16	106.78	0					18	11	2	0	0	0	0.41409	1	39117	39117		24.021	0	1	2484100			10421	1429	7293	7358	10192	10192					-0.06477216184111967
EEYQQAQHKF	10	Unmodified	_EEYQQAQHKF_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000568870.1_1_16:89958640-89960287:+|nuORF;TCF25|p.L347Sfs*5|1|0.25|ENSG00000141002|chr16:89898571-89898571|C/-|frameshift_variant	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-SECPEP	A375_MHC_IP_R1	1	436.1358337402344	3	436.538681	1306.59421	-0.097818	-4.2701E-05	-0.28641	-0.00012503	-0.38423	-0.00016773	436.5385838909998	20.195	0.35463	20.195	20.03	20.384	0					16	6	3	0	0	0	0.56504	1	5121	5121		23.801	23.393	1	3282600			10422	5206	7294	7359	10193	10193					-0.04681880338625888
EEYQQAQHKF	10	Unmodified	_EEYQQAQHKF_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000568870.1_1_16:89958640-89960287:+|nuORF;TCF25|p.L347Sfs*5|1|0.25|ENSG00000141002|chr16:89898571-89898571|C/-|frameshift_variant	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-SECPEP	A375_MHC_IP_R2	2	436.9383239746094	3	436.538681	1306.59421	-0.56276	-0.00024566	-0.52016	-0.00022707	-1.0829	-0.00047273	436.8726914183608	19.171	0.30101	19.774	19.583	19.884	0.60308					13	5	3	0	0	0	0.91909	1	5904	5904		8.4443	5.601	1	3565300			10423	5206	7294	7359	10194	10194					-0.04681880338625888
EEYQQKMYET	10	Unmodified	_EEYQQKMYET_					0	0	0			REV__ENSG00000047662|ENST00000265018|FAM184B	REV__ENSG00000047662|ENST00000265018|FAM184B	MULTI-SECPEP	A375_MHC_IP_R1	1	450.2773132324219	3	450.195704	1347.56528	-0.35306	-0.00015895	-1.5994	-0.00072005	-1.9525	-0.000879	450.52950953861125	23.406	0.15368	23.406	23.278	23.432	0					4	2	2	0	0	0	0.94269	1	6378	6378		5.7834	0	1	1642500	+		10424	16364	7295	7360	10195	10195					-0.09459785749913863
EEYQSLIRY	9	Unmodified	_EEYQSLIRY_					0	0	0		ENSG00000143222|ENST00000368003|UFC1;ENST00000473766.5_1_1:161123787-161127484:+|nuORF;ENST00000463735.1_1_1:161123865-161127131:+|nuORF	ENSG00000143222|ENST00000368003|UFC1	ENSG00000143222|ENST00000368003|UFC1	MULTI-MSMS	A375_MHC_IP_R1	1	601.19873046875	2	600.798403	1199.58225	-0.70063	-0.00042094	-3.1182	-0.0018734	-3.8189	-0.0022944	600.7987031836218	67.397	0.91431	67.397	66.99	67.904	0					80	17	6	0	0	0	0.01156	2	24362	24362;24491		181.69	120.33	1	45924000			10425	5360	7296	7361	10196;10197	10196					-0.00955497081804424
EEYQSLIRY	9	Unmodified	_EEYQSLIRY_					0	0	0		ENSG00000143222|ENST00000368003|UFC1;ENST00000473766.5_1_1:161123787-161127484:+|nuORF;ENST00000463735.1_1_1:161123865-161127131:+|nuORF	ENSG00000143222|ENST00000368003|UFC1	ENSG00000143222|ENST00000368003|UFC1	MULTI-MSMS	A375_MHC_IP_R2	2	601.1983642578125	2	600.798403	1199.58225	-0.59189	-0.00035561	-3.029	-0.0018198	-3.6209	-0.0021755	600.7986442205881	66.734	1.2728	67.47	66.678	67.951	0.73631					86	24	6	0	0	0	0.00075692	2	25264	25222;25264		197.81	136.45	1	56239000			10426	5360	7296	7361	10198;10199	10199					-0.00955497081804424
EEYRGFTQDF	10	Unmodified	_EEYRGFTQDF_					0	0	0		ENSG00000175467|ENST00000312397|SART1;ENST00000533386.1_1_11:65744508-65745532:+|nuORF	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-SECPEP	A375_MHC_IP_R1	1	646.6830444335938	2	646.283117	1290.55168	-0.52803	-0.00034126	-0.16401	-0.000106	-0.69204	-0.00044725	646.2829892357737	65.784	0.45786	65.784	65.514	65.972	0					15	8	2	0	0	0	0.022742	1	23814	23814		117.84	99.691	1	3476000			10427	7961	7297	7362	10200	10200					-0.08197275466864085
EEYRGGNNW	9	Unmodified	_EEYRGGNNW_					0	0	0		ENST00000358746.6_1_5:94886290-94886347:-|nuORF	ENST00000358746.6_1_5:94886290-94886347:-|nuORF	ENST00000358746.6_1_5:94886290-94886347:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	563.14111328125	2	562.741419	1123.46829	-0.74883	-0.0004214	0.086332	4.8583E-05	-0.6625	-0.00037282	562.7414563089775	29.022	0.65796	29.022	28.795	29.453	0					34	12	4	0	0	0	0.0022058	2	9005	9005;9026		142.08	88.504	1	126990000			10428	11001	7298	7363	10201;10202	10201					-0.08850967124044473
EEYRGGNNW	9	Unmodified	_EEYRGGNNW_					0	0	0		ENST00000358746.6_1_5:94886290-94886347:-|nuORF	ENST00000358746.6_1_5:94886290-94886347:-|nuORF	ENST00000358746.6_1_5:94886290-94886347:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	562.2053833007812	2	562.741419	1123.46829	-1.0065	-0.00056642	0.16543	9.3095E-05	-0.8411	-0.00047332	562.7414649462071	28.407	0.5556	29.086	28.858	29.414	0.67857					31	10	4	0	0	0	0.0015808	4	9812	9780;9806;9812;9890		155.03	91.463	1	136080000			10429	11001	7298	7363	10203;10204;10205;10206	10205					-0.08850967124044473
EEYRNVKW	8	Unmodified	_EEYRNVKW_					0	0	0		nc|ENSG00000088992|Q96BS2-2|TESC	nc|ENSG00000088992|Q96BS2-2|TESC	nc|ENSG00000088992|Q96BS2-2|TESC	MULTI-MSMS	A375_MHC_IP_R2	2	375.589111328125	3	375.189212	1122.54581	-0.16912	-6.345E-05	0.18918	7.098E-05	0.020068	7.5294E-06	375.18920687521194	37.346	0.56154	38.116	37.816	38.378	0.7709					25	10	3	0	0	0	0.75805	1	13639	13639		13.906	3.1065	1	5410400			10430	14495	7299	7364	10207	10207					-0.010563291878725067
EEYRNVKW	8	Unmodified	_EEYRNVKW_					0	0	0		nc|ENSG00000088992|Q96BS2-2|TESC	nc|ENSG00000088992|Q96BS2-2|TESC	nc|ENSG00000088992|Q96BS2-2|TESC	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	375.189212	1122.54581	-0.16912	-6.345E-05	0.18918	7.098E-05	0.020068	7.5294E-06	375.18920687521194	37.346	0.56154	38.116	37.816	38.378	0.7709	-0.034561	-4.5237E-05	NaN	13.906	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5410400			10431	14495	7299	7364							-0.010563291878725067
EEYRPEFSNF	10	Unmodified	_EEYRPEFSNF_					0	0	0		ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19931694-19949148:+|nuORF	ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19931694-19949148:+|nuORF	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	A375_MHC_IP_R1	1	659.6901245117188	2	659.290942	1316.56733	-0.2696	-0.00017775	-0.15917	-0.00010494	-0.42878	-0.00028269	659.2907120459747	70.188	0.45901	70.188	69.933	70.392	0					18	8	3	0	0	0	0.0070192	1	25472	25472		132.13	82.58	1	4431200			10432	2388;12039	7300	7365	10208	10208					-0.0782898894981372
EEYRPEFSNF	10	Unmodified	_EEYRPEFSNF_					0	0	0		ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19931694-19949148:+|nuORF	ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19931694-19949148:+|nuORF	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	A375_MHC_IP_R2	2	659.690185546875	2	659.290942	1316.56733	-0.82266	-0.00054237	-0.31078	-0.00020489	-1.1334	-0.00074727	659.2907580963861	69.623	0.5101	70.357	70.132	70.642	0.73421					25	9	4	0	0	0	0.0089867	1	26368	26368		107.56	55.934	1	4746600			10433	2388;12039	7300	7365	10209	10209					-0.0782898894981372
EEYRQPDI	8	Unmodified	_EEYRQPDI_					0	0	0			REV__ENSG00000104142|ENST00000220509|VPS18	REV__ENSG00000104142|ENST00000220509|VPS18	MULTI-SECPEP	A375_MHC_IP_R2	2	525.160888671875	2	525.248546	1048.48254	-0.80631	-0.00042351	-0.09181	-4.8223E-05	-0.89812	-0.00047174	525.2484733868862	36.461	0.50797	37.232	37.005	37.513	0.7709					22	9	3	0	0	0	0.93416	1	13344	13344		20.871	0	1	16803000	+		10434	17306	7301	7366	10210	10210					-0.03976314695773908
EEYRSKGVF	9	Unmodified	_EEYRSKGVF_					0	0	0		ENST00000533802.5_2_11:43855633-43876795:+|nuORF;ENST00000533090.6_2_11:43852474-43876795:+|nuORF;ENSG00000149084|ENST00000278353|HSD17B12	ENST00000533802.5_2_11:43855633-43876795:+|nuORF	ENST00000533802.5_2_11:43855633-43876795:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1114.723388671875	1	1114.55275	1113.54547	0.1266	0.0001411	-0.15515	-0.00017292	-0.028554	-3.1825E-05	1115.5567624361327	123.66	0.30391	123.99	123.84	124.14	0.32969					6	5	2	0	0	0	0.6656	1	47519	47519		10.074	2.1638	1	11134000			10435	5780	7302	7367	10211	10211					-0.006757489077244827
EEYTWDGHD	9	Unmodified	_EEYTWDGHD_					0	0	0			REV__ENSG00000116017|ENST00000263620|ARID3A	REV__ENSG00000116017|ENST00000263620|ARID3A	MULTI-MSMS	A375_MHC_IP_R1	1	576.6826171875	2	576.217443	1150.42033	-0.47535	-0.00027391	0.7419	0.00042749	0.26654	0.00015359	576.2179396933724	26.097	0.75894	26.097	25.765	26.524	0					35	14	3	0	0	0	0.72507	1	7886	7886		4.756	4.756	1	16688000	+		10436	17933	7303	7368	10212	10212					-0.14886085834768892
EEYVVEKVL	9	Unmodified	_EEYVVEKVL_					0	0	0		ENSG00000094916|ENST00000209875|CBX5;ENSG00000108468|ENST00000225603|CBX1	ENSG00000094916|ENST00000209875|CBX5;ENSG00000108468|ENST00000225603|CBX1	ENSG00000094916|ENST00000209875|CBX5	MULTI-SECPEP	A375_MHC_IP_R1	1	554.7000122070312	2	554.300247	1106.58594	-0.4218	-0.0002338	1.629	0.00090298	1.2073	0.00066918	554.3018163013608	71.22	0.76702	71.22	70.648	71.415	0					21	14	2	0	0	0	0.11849	1	25880	25880		70.332	18.064	1	3014200			10437	2029;2803	7304	7369	10213	10213					0.036911726920379806
EEYVVEKVL	9	Unmodified	_EEYVVEKVL_					0	0	0		ENSG00000094916|ENST00000209875|CBX5;ENSG00000108468|ENST00000225603|CBX1	ENSG00000094916|ENST00000209875|CBX5;ENSG00000108468|ENST00000225603|CBX1	ENSG00000094916|ENST00000209875|CBX5	MULTI-MSMS	A375_MHC_IP_R2	2	554.6998901367188	2	554.300247	1106.58594	-0.74665	-0.00041387	-1.0277	-0.00056964	-1.7743	-0.00098351	554.3002491073796	70.505	0.65894	71.239	70.895	71.553	0.73421					23	12	3	0	0	0	0.0096822	1	26731	26731		110.55	45.318	1	4839400			10438	2029;2803	7304	7369	10214	10214					0.036911726920379806
EEYWNSSKF	9	Unmodified	_EEYWNSSKF_					0	0	0		nc|ENSG00000151445|Q9H9C1-2|VIPAS39;ENSG00000151445|ENST00000557658|VIPAS39	nc|ENSG00000151445|Q9H9C1-2|VIPAS39	nc|ENSG00000151445|Q9H9C1-2|VIPAS39	MULTI-SECPEP	A375_MHC_IP_R1	1	594.7048950195312	2	595.261653	1188.50875	-0.40876	-0.00024332	0.2209	0.00013149	-0.18786	-0.00011183	595.2615741439614	57.949	0.5081	57.949	57.618	58.126	0					11	9	2	0	0	0	0.77901	1	20763	20763		9.3831	6.8056	1	1558500			10439	5905	7305	7370	10215	10215					-0.07796045524287365
EEYWNSSKF	9	Unmodified	_EEYWNSSKF_					0	0	0		nc|ENSG00000151445|Q9H9C1-2|VIPAS39;ENSG00000151445|ENST00000557658|VIPAS39	nc|ENSG00000151445|Q9H9C1-2|VIPAS39	nc|ENSG00000151445|Q9H9C1-2|VIPAS39	MULTI-SECPEP	A375_MHC_IP_R2	2	594.7055053710938	2	595.261653	1188.50875	-0.93732	-0.00055795	0.64208	0.00038221	-0.29524	-0.00017575	595.2619121002912	57.273	0.45963	58.022	57.711	58.17	0.74895					11	8	2	0	0	0	0.76452	1	21659	21659		8.1555	4.8742	1	1075500			10440	5905	7305	7370	10216	10216					-0.07796045524287365
EEYYDDNY	8	Unmodified	_EEYYDDNY_					0	0	0			REV__ENST00000494443.5_1_X:153608322-153608766:+|nuORF	REV__ENST00000494443.5_1_X:153608322-153608766:+|nuORF	MSMS	A375_MHC_IP_R2	2	555.7152709960938	2	555.698551	1109.38255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.965	1	88.697	88.197	89.197	0.7318								0	0	0	0.16876	1	33469	33469		10.183	1.5901	1		+		10441	17207	7306	7371	10217	10217					-0.16776596820227496
EEYYLFNEQ	9	Unmodified	_EEYYLFNEQ_					0	0	0			REV__ENSG00000124701|ENST00000244669|APOBEC2	REV__ENSG00000124701|ENST00000244669|APOBEC2	MSMS	A375_MHC_IP_R1	1	617.7215576171875	2	617.766768	1233.51898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.208	1	60.208	59.708	60.708	0								0	0	0	0.15283	1	21674	21674		16.942	1.0951	1		+		10442	18319	7307	7372	10218	10218					-0.08843482589736595
EEYYSHYYHYY	11	Unmodified	_EEYYSHYYHYY_					0	0	0		ENSG00000059769|ENST00000313525|DNAJC25;nc|ENSG00000059769|Q9H1X3-2|DNAJC25;ENST00000463589.5_1_9:114405367-114415499:+|nuORF	ENSG00000059769|ENST00000313525|DNAJC25	ENSG00000059769|ENST00000313525|DNAJC25	MSMS	A375_MHC_IP_R2	2	808.8224487304688	2	808.820064	1615.62557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.418	1	64.158	63.658	64.658	0.74022								0	0	0	0.16354	1	24041	24041		0.30703	0.30703	1				10443	1306	7308	7373	10219	10219					-0.15761352095159964
EEYYYAKDY	9	Unmodified	_EEYYYAKDY_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	MULTI-MSMS	A375_MHC_IP_R1	1	622.660888671875	2	622.261319	1242.50808	-0.23156	-0.00014409	0.279	0.00017361	0.047431	2.9514E-05	622.2613589130389	42.932	0.60978	42.932	42.587	43.197	0					21	11	3	0	0	0	0.0090297	1	14927	14927		99.755	43.578	1	2529000			10444	7316	7309	7374	10220	10220					-0.10346884963996672
EEYYYAKDY	9	Unmodified	_EEYYYAKDY_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	MULTI-MSMS	A375_MHC_IP_R2	2	622.6608276367188	2	622.261319	1242.50808	-0.68135	-0.00042398	-0.2636	-0.00016403	-0.94495	-0.000588	622.2614327972236	42.364	0.71373	43.136	42.809	43.523	0.7724					24	13	3	0	0	0	0.018261	1	15777	15777		85.642	56.56	1	1804000			10445	7316	7309	7374	10221	10221					-0.10346884963996672
EFAAFFEEGEF	11	Unmodified	_EFAAFFEEGEF_					0	0	0			REV__nc|ENSG00000177595|Q9HB75-6|PIDD1	REV__nc|ENSG00000177595|Q9HB75-6|PIDD1	MULTI-MSMS	A375_MHC_IP_R2	2	441.92431640625	3	441.524038	1321.55028	-0.25849	-0.00011413	0.85243	0.00037637	0.59394	0.00026224	441.524358213165	84.154	0.51158	84.894	84.663	85.175	0.73962					15	9	2	0	0	0	0.73472	1	32003	32003		4.4062	1.7749	1	1994200	+		10446	25787	7310	7375	10222	10222					-0.09762909555615806
EFAEIFIQR	9	Unmodified	_EFAEIFIQR_					0	0	0			REV__tr|U7SJJ3|U7SJJ3_FUSNUCRISPR-associatedendonucleaseCas1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas1PE=3SV=1	REV__tr|U7SJJ3|U7SJJ3_FUSNUCRISPR-associatedendonucleaseCas1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas1PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	385.27325439453125	3	384.873113	1151.59751	0.11708	4.506E-05	0.27337	0.00010521	0.39044	0.00015027	384.87316963482914	46.881	0.71859	46.881	46.596	47.315	0					39	13	4	0	0	0	0.47368	1	16453	16453		24.991	9.7425	1	17526000	+		10447	28237	7311	7376	10223	10223					0.02777414506022069
EFAEIFIQR	9	Unmodified	_EFAEIFIQR_					0	0	0			REV__tr|U7SJJ3|U7SJJ3_FUSNUCRISPR-associatedendonucleaseCas1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas1PE=3SV=1	REV__tr|U7SJJ3|U7SJJ3_FUSNUCRISPR-associatedendonucleaseCas1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas1PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	385.2489318847656	3	384.873113	1151.59751	-0.039275	-1.5116E-05	0.22515	8.6656E-05	0.18588	7.154E-05	384.87317178607196	46.166	0.71036	46.931	46.603	47.313	0.76519					35	13	3	0	0	0	0.60101	1	17397	17397		10.151	4.8537	1	18395000	+		10448	28237	7311	7376	10224	10224					0.02777414506022069
EFAEIFIQR	9	Unmodified	_EFAEIFIQR_					0	0	0			REV__tr|U7SJJ3|U7SJJ3_FUSNUCRISPR-associatedendonucleaseCas1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas1PE=3SV=1	REV__tr|U7SJJ3|U7SJJ3_FUSNUCRISPR-associatedendonucleaseCas1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas1PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	385.2732849121094	3	384.873113	1151.59751	-0.039275	-1.5116E-05	0.22515	8.6656E-05	0.18588	7.154E-05	384.87317178607196	46.166	0.71036	46.931	46.603	47.313	0.76519					35	13	3	0	0	0	0.47368	1	17244	17244		24.991	9.7425	1	18395000	+		10449	28237	7311	7376	10225	10225					0.02777414506022069
EFAHCCLH	8	Unmodified	_EFAHCCLH_					0	0	0		ENST00000393229.3_1_9:135117391-135118432:+|nuORF	ENST00000393229.3_1_9:135117391-135118432:+|nuORF	ENST00000393229.3_1_9:135117391-135118432:+|nuORF	MSMS	A375_MHC_IP_R1	1	480.153076171875	2	480.196748	958.378942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.982	1	61.982	61.482	62.482	0								0	0	0	0.16876	1	22371	22371		20.871	6.2895	1				10450	11438	7312	7377	10226	10226					-0.10191216608768627
EFAPDSLFHQ	10	Unmodified	_EFAPDSLFHQ_					0	0	0		nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1	nc|ENSG00000116127|Q8TCU4-3|ALMS1	nc|ENSG00000116127|Q8TCU4-3|ALMS1	MULTI-SECPEP	A375_MHC_IP_R2	2	596.15478515625	2	595.77747	1189.54039	-0.48885	-0.00029125	-0.19314	-0.00011507	-0.68199	-0.00040632	595.7774097765739	64.381	0.51057	65.121	64.902	65.412	0.74022					16	9	2	0	0	0	0.91442	1	24369	24369		7.609	0.31972	1	1984500			10451	3371	7313	7378	10227	10227					-0.04680052770322618
EFARRIMSTST	11	Unmodified	_EFARRIMSTST_					0	0	0			REV__ENSG00000188641|ENST00000370192|DPYD	REV__ENSG00000188641|ENST00000370192|DPYD	MULTI-SECPEP	A375_MHC_IP_R1	1	432.96307373046875	3	433.555566	1297.64487	-0.16935	-7.3423E-05	0.45554	0.0001975	0.28619	0.00012408	433.8889919372776	74.2	0.86086	74.2	73.843	74.704	0					21	16	2	0	0	0	0.99548	1	27116	27116		3.5927	1.5067	1	547450	+		10452	22104	7314	7379	10228	10228					0.007953257147391923
EFCTPELD	8	Unmodified	_EFCTPELD_					0	0	0			REV__ENSG00000076258|ENST00000367749|FMO4	REV__ENSG00000076258|ENST00000367749|FMO4	MSMS	A375_MHC_IP_R2	2	477.162109375	2	477.199676	952.384799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.071	1	85.807	85.307	86.307	0.73601								0	0	0	0.16876	1	32342	32342		9.3474	0	1		+		10453	16671	7315	7380	10229	10229					-0.0932983961613445
EFDAYIIVSF	10	Unmodified	_EFDAYIIVSF_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-SECPEP	A375_MHC_IP_R2	2	401.30316162109375	3	401.869257	1202.58594	-0.078817	-3.1674E-05	-0.2763	-0.00011104	-0.35511	-0.00014271	401.8693555719835	27.109	0.61396	27.787	27.484	28.098	0.67857					16	11	2	0	0	0	0.93578	1	9327	9327		3.3196	0	1	1633800			10454	8958	7316	7381	10230	10230					-0.007248273079767387
EFDEQATEID	10	Unmodified	_EFDEQATEID_					0	0	0			REV__ENST00000470137.5_1_13:44398084-44434086:-|nuORF	REV__ENST00000470137.5_1_13:44398084-44434086:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	599.1514892578125	2	598.751315	1195.48808	-0.71847	-0.00043018	1.0312	0.00061745	0.31275	0.00018726	598.7518346184594	36.307	0.61151	37.078	36.85	37.461	0.7709					20	11	3	0	0	0	0.2347	1	13241	13241		45.7	12.914	1	4042200	+		10455	19772	7317	7382	10231	10231					-0.10184680694624149
EFDEQATEID	10	Unmodified	_EFDEQATEID_					0	0	0			REV__ENST00000470137.5_1_13:44398084-44434086:-|nuORF	REV__ENST00000470137.5_1_13:44398084-44434086:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	598.751315	1195.48808	-0.43796	-0.00026223	1.4633	0.00087614	1.0253	0.00061391	598.7519563933761	37.024	0.45385	37.024	36.795	37.249	0	-0.026861	0.00024715	NaN	45.7	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2949900	+		10456	19772	7317	7382							-0.10184680694624149
EFDEQATEID	10	Unmodified	_EFDEQATEID_					0	0	0			REV__ENST00000470137.5_1_13:44398084-44434086:-|nuORF	REV__ENST00000470137.5_1_13:44398084-44434086:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	598.751315	1195.48808	-0.71847	-0.00043018	1.0312	0.00061745	0.31275	0.00018726	598.7518346184594	36.307	0.61151	37.078	36.85	37.461	0.7709	0.026861	-0.00027024	NaN	45.7	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4042200	+		10457	19772	7317	7382							-0.10184680694624149
EFDQDDNEDS	10	Unmodified	_EFDQDDNEDS_					0	0	0			REV__nc|ENSG00000134444|Q9P260|RELCH	REV__nc|ENSG00000134444|Q9P260|RELCH	MSMS	A375_MHC_IP_R1	1	607.1494750976562	2	607.210012	1212.40547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.079	1	37.079	36.579	37.579	0								0	0	0	0.15465	1	12470	12470		5.7319	2.1354	1		+		10458	18780	7318	7383	10232	10232					-0.19223622493404946
EFDQDDNEDS	10	Unmodified	_EFDQDDNEDS_					0	0	0			REV__nc|ENSG00000134444|Q9P260|RELCH	REV__nc|ENSG00000134444|Q9P260|RELCH	MSMS	A375_MHC_IP_R1	1	607.1490478515625	2	607.210012	1212.40547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.129	1	37.129	36.629	37.629	0								0	0	0	0.15531	1	12493	12493		3.5965	0.31518	1		+		10459	18780	7318	7383	10233	10233					-0.19223622493404946
EFDQKRVKY	9	Unmodified	_EFDQKRVKY_					0	0	0		ENSG00000124743|ENST00000370905|KLHL31	ENSG00000124743|ENST00000370905|KLHL31	ENSG00000124743|ENST00000370905|KLHL31	MSMS	A375_MHC_IP_R1	1	404.9519958496094	3	404.8839	1211.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.869	1	30.869	30.369	31.369	0								0	0	0	0.15486	1	9850	9850		4.897	0.70751	1				10460	3924	7319	7384	10234	10234					0.032522019090492904
EFDRFGTI	8	Unmodified	_EFDRFGTI_					0	0	0		RBM15|p.L561*|1|0.15|ENSG00000162775|chr1:110341085-110341085|T/-|frameshift_variant;nc|ENSG00000162775|Q96T37-4|RBM15;nc|ENSG00000162775|Q96T37-2|RBM15;nc|ENSG00000162775|Q96T37-3|RBM15;ENSG00000162775|ENST00000369784|RBM15	RBM15|p.L561*|1|0.15|ENSG00000162775|chr1:110341085-110341085|T/-|frameshift_variant	RBM15|p.L561*|1|0.15|ENSG00000162775|chr1:110341085-110341085|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	492.6632080078125	2	492.742899	983.471246	-0.46986	-0.00023152	0.98213	0.00048394	0.51227	0.00025242	492.7428869709226	78.365	0.81158	79.11	78.677	79.489	0.74474					36	15	4	0	0	0	0.77123	1	29666	29666		14.582	2.0501	1	2392600			10461	6594	7320	7385	10235	10235					-0.02115091999235119
EFEATLKQR	9	Unmodified	_EFEATLKQR_					0	0	0			REV__nc|ENSG00000125844|Q9P2E9-3|RRBP1	REV__nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MSMS	A375_MHC_IP_R2	2	374.9375	3	374.536501	1120.58767	0.46093	0.00017263	1.6102	0.0006031	2.0712	0.00077573	374.53665496114616	44.076	1.0132	44.845	44.53	45.543	0.7691					38	19	3	0	0	0	0.58268	1	16448	16448		15.739	2.1238	1	6630100	+		10462	18367	7321	7386	10236	10236					0.032202265006844755
EFEEKLARF	9	Unmodified	_EFEEKLARF_					0	0	0		ENSG00000255009|ENST00000530464|UBTFL1;nc|ENSG00000228970|P0CB48|UBTFL6	ENSG00000255009|ENST00000530464|UBTFL1	ENSG00000255009|ENST00000530464|UBTFL1	MULTI-MSMS	A375_MHC_IP_R1	1	390.6045837402344	3	390.204751	1167.59242	0.16685	6.5105E-05	0.91763	0.00035806	1.0845	0.00042317	390.2047736603068	60.293	0.45719	60.293	60.057	60.514	0					19	8	4	0	0	0	0.55471	1	21720	21720		21.59	11.44	1	1621400			10463	9886	7322	7387	10237	10237					0.01533110643413238
EFEESEEDP	9	Unmodified	_EFEESEEDP_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MULTI-SECPEP	A375_MHC_IP_R1	1	555.7250366210938	2	555.709116	1109.40368	-0.50778	-0.00028218	-1.5071	-0.0008375	-2.0149	-0.0011197	555.7083705579506	77.714	0.35838	77.714	77.537	77.895	0					8	6	2	0	0	0	0.65246	1	28344	28344		15.847	4.2069	1	1285400			10464	7484	7323	7388	10238	10238					-0.14664631511368498
EFEEVIEDW	9	Unmodified	_EFEEVIEDW_					0	0	0		ENSG00000137161|ENST00000372836|CNPY3	ENSG00000137161|ENST00000372836|CNPY3	ENSG00000137161|ENST00000372836|CNPY3	MSMS	A375_MHC_IP_R2	2	598.1817626953125	2	598.261319	1194.50808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.68	1	67.416	66.916	67.916	0.73631								0	0	0	0.15486	1	25262	25262		7.9102	1.187	1				10465	4864	7324	7389	10239	10239					-0.08138884963977944
EFEFYCMAC	9	Unmodified	_EFEFYCMAC_					0	0	0		nc|ENSG00000215421|Q9C0G0-3|ZNF407;nc|ENSG00000215421|Q9C0G0-2|ZNF407;ENSG00000215421|ENST00000299687|ZNF407	nc|ENSG00000215421|Q9C0G0-3|ZNF407	nc|ENSG00000215421|Q9C0G0-3|ZNF407	MSMS	A375_MHC_IP_R1	1	571.6918334960938	2	571.703214	1141.39187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.35	1	127.35	126.85	127.85	0								0	0	0	0.15486	1	48784	48784		4.3292	0	1				10466	9645	7325	7390	10240	10240					-0.17316566331533068
EFEHVNGKY	9	Unmodified	_EFEHVNGKY_					0	0	0		ENSG00000116254|ENST00000262450|CHD5	ENSG00000116254|ENST00000262450|CHD5	ENSG00000116254|ENST00000262450|CHD5	MULTI-SECPEP	A375_MHC_IP_R2	2	374.585693359375	3	374.845334	1121.51417	0.25589	9.5918E-05	-0.18904	-7.086E-05	0.066849	2.5058E-05	374.84519919271014	32.819	0.15195	33.556	33.468	33.62	0.73691					4	2	2	0	0	0	0.75466	1	11738	11738		8.1555	0.67846	1	735970			10467	3390	7326	7391	10241	10241					-0.04172321941791779
EFELEPIEV	9	Unmodified	_EFELEPIEV_					0	0	0			REV__ENSG00000109917|ENST00000227322|ZPR1	REV__ENSG00000109917|ENST00000227322|ZPR1	MULTI-SECPEP	A375_MHC_IP_R1	1	552.158447265625	2	552.776605	1103.53866	-0.60767	-0.00033591	-1.0594	-0.0005856	-1.667	-0.0009215	552.7761169698437	58.353	0.55878	58.353	58.126	58.685	0					14	10	2	0	0	0	0.71541	1	20899	20899		7.2892	0	1	1657800	+		10468	17602	7327	7392	10242	10242					-0.008971065789410204
EFELKNNLL	9	Unmodified	_EFELKNNLL_					0	0	0			REV__nc|ENSG00000132554|Q8NE09-3|RGS22	REV__nc|ENSG00000132554|Q8NE09-3|RGS22	MULTI-SECPEP	A375_MHC_IP_R2	2	559.661376953125	2	560.305864	1118.59717	-0.92742	-0.00051964	0.2604	0.0001459	-0.66702	-0.00037374	560.3062381054198	38.75	0.71581	39.525	39.3	40.016	0.77451					22	13	3	0	0	0	0.72623	1	14236	14236		9.3831	0	1	2772900	+		10469	18662	7328	7393	10243	10243					0.04261994786179457
EFELKNNLL	9	Unmodified	_EFELKNNLL_					0	0	0			REV__nc|ENSG00000132554|Q8NE09-3|RGS22	REV__nc|ENSG00000132554|Q8NE09-3|RGS22	MULTI-MATCH	A375_MHC_IP_R1	1		2	560.305864	1118.59717	-0.69736	-0.00039074	0.83944	0.00047034	0.14208	7.9607E-05	560.306122820389	39.595	0.55747	39.595	39.441	39.999	0	0.035033	0.00031773	NaN	9.3831	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3227100	+		10470	18662	7328	7393							0.04261994786179457
EFEMMCGEPVW	11	Unmodified	_EFEMMCGEPVW_					0	0	0			REV__ENST00000396596.2_1_8:67687466-67705900:+|nuORF	REV__ENST00000396596.2_1_8:67687466-67705900:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	678.8004760742188	2	679.266709	1356.51887	-0.90148	-0.00061235	3.3754	0.0022928	2.4739	0.0016805	679.7709643098466	134.35	0.15071	134.35	134.27	134.42	0					4	2	2	0	0	0	0.99921	1	51830	51830		3.2813	1.9518	1	845980	+		10471	24341	7329	7394	10244	10244					-0.1451326517724283
EFENRQEEY	9	Unmodified	_EFENRQEEY_					0	0	0			REV__ENSG00000165623|ENST00000378681|UCMA	REV__ENSG00000165623|ENST00000378681|UCMA	MSMS	A375_MHC_IP_R1	1	622.1947021484375	2	622.264924	1242.5153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.459	1	78.459	77.959	78.959	0								0	0	0	0.15486	1	28632	28632		11.64	4.9171	1		+		10472	20600	7330	7395	10245	10245					-0.09626152363557594
EFEQSVQGGS	10	Unmodified	_EFEQSVQGGS_					0	0	0		nc|ENSG00000154783|Q6ZNL6-2|FGD5;ENSG00000154783|ENST00000285046|FGD5	nc|ENSG00000154783|Q6ZNL6-2|FGD5	nc|ENSG00000154783|Q6ZNL6-2|FGD5	MULTI-MSMS	A375_MHC_IP_R1	1	534.634765625	2	534.235635	1066.45672	-0.70661	-0.00037749	-0.70498	-0.00037662	-1.4116	-0.00075412	534.2353321294315	61.388	0.51022	61.388	61.075	61.585	0					19	9	3	0	0	0	0.70615	1	22121	22121		9.544	0.16085	1	5629800			10473	6109	7331	7396	10246	10246					-0.07385208938035248
EFETVEVKTLY	11	Unmodified	_EFETVEVKTLY_					0	0	0			REV__ENSG00000230667|ENST00000596516|SETSIP	REV__ENSG00000230667|ENST00000596516|SETSIP	MSMS	A375_MHC_IP_R1	1	679.5114135742188	2	679.347926	1356.6813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.313	1	67.313	66.813	67.813	0								0	0	0	0.16297	1	24391	24391		3.2813	0	1		+		10474	22741	7332	7397	10247	10247					0.017224810924290068
EFFKKNPEH	9	Unmodified	_EFFKKNPEH_					0	0	0			REV__ENSG00000002587|ENST00000002596|HS3ST1	REV__ENSG00000002587|ENST00000002596|HS3ST1	MSMS	A375_MHC_IP_R1	1	588.2344970703125	2	588.29583	1174.57711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.674	1	97.674	97.174	98.174	0								0	0	0	0.15486	1	35884	35884		8.7454	0.83525	1		+		10475	16087	7333	7398	10248	10248					-0.0031975615377177746
EFGDETKMY	9	Unmodified	_EFGDETKMY_					0	0	0			REV__ENST00000468071.1_1_2:18736459-18741913:-|nuORF	REV__ENST00000468071.1_1_2:18736459-18741913:-|nuORF	MSMS	A375_MHC_IP_R2	2	560.1824951171875	2	560.23679	1118.45903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.083	1	62.826	62.326	63.326	0.74263								0	0	0	0.15142	1	23531	23531		19.257	3.4888	1		+		10476	22782	7334	7399	10249	10249					-0.09546496524581016
EFGHSVQFQW	10	Unmodified	_EFGHSVQFQW_					0	0	0		ENST00000392185.7_2_6:158349714-158356999:+|nuORF	ENST00000392185.7_2_6:158349714-158356999:+|nuORF	ENST00000392185.7_2_6:158349714-158356999:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	633.1915893554688	2	632.790912	1263.56727	-0.51258	-0.00032436	-0.30492	-0.00019295	-0.8175	-0.00051731	632.7907768874801	82.712	0.60962	82.712	82.214	82.823	0					25	11	3	0	0	0	0.91556	1	30203	30203		10.074	1.3285	1	3185400			10477	11416	7335	7400	10250	10250					-0.05396944159156192
EFGPVYSDDY	10	Unmodified	_EFGPVYSDDY_					0	0	0			REV__ENST00000550771.5_1_12:49212712-49217616:+|nuORF	REV__ENST00000550771.5_1_12:49212712-49217616:+|nuORF	MSMS	A375_MHC_IP_R1	1	596.2340698242188	2	596.245669	1190.47678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.28	1	103.28	102.78	103.78	0								0	0	0	0.15332	1	37941	37941		10.074	3.3508	1		+		10478	20768	7336	7401	10251	10251					-0.11083457998074664
EFHLLDSAVYY	11	Unmodified	_EFHLLDSAVYY_					0	0	0		ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	MULTI-MSMS	A375_MHC_IP_R2	2	679.2258911132812	2	678.82716	1355.63977	-0.44334	-0.00030095	-0.92137	-0.00062545	-1.3647	-0.0009264	678.8264887995033	43.841	0.50378	44.61	44.38	44.883	0.7691					19	9	3	0	0	0	0.60697	1	16378	16378		22.736	0	1	2916300			10479	1311	7337	7402	10252	10252					-0.02382654876214474
EFHMCIRREEF	11	Unmodified	_EFHMCIRREEF_					0	0	0			REV__ENST00000476125.5_1_3:181427643-181427781:+|nuORF	REV__ENST00000476125.5_1_3:181427643-181427781:+|nuORF	MSMS	A375_MHC_IP_R1	1	499.4603576660156	3	499.563956	1495.67004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.649	1	56.649	56.149	57.149	0								0	0	0	0.16309	1	20298	20298		2.6312	1.3016	1		+		10480	25177	7338	7403	10253	10253					-0.057969427543412166
EFHYARDQS	9	Unmodified	_EFHYARDQS_					0	0	0		ENSG00000088179|ENST00000263708|PTPN4	ENSG00000088179|ENST00000263708|PTPN4	ENSG00000088179|ENST00000263708|PTPN4	MULTI-MSMS	A375_MHC_IP_R1	1	576.6720581054688	2	576.757069	1151.49959	-0.33928	-0.00019569	-2.0349	-0.0011737	-2.3742	-0.0013693	576.756067192318	66.096	0.45564	66.096	65.871	66.326	0					11	8	2	0	0	0	0.64808	1	23881	23881		11.64	2.8949	1	1687400			10481	1884	7339	7404	10254	10254					-0.07010394089957117
EFIDANLIN	9	Unmodified	_EFIDANLIN_					0	0	0			REV__tr|U7T1R9|U7T1R9_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00550PE=4SV=1	REV__tr|U7T1R9|U7T1R9_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00550PE=4SV=1	MSMS	A375_MHC_IP_R1	1	524.6892700195312	2	524.769114	1047.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.936	1	94.936	94.436	95.436	0								0	0	0	0.1521	1	34894	34894		18.146	2.2992	1		+		10482	28705	7340	7405	10255	10255					0.001814463437312952
EFIEKNKRMLM	11	Unmodified	_EFIEKNKRMLM_					0	0	0		tr|U7T3C8|U7T3C8_FUSNU4Fe-4Sdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00221PE=4SV=1	tr|U7T3C8|U7T3C8_FUSNU4Fe-4Sdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00221PE=4SV=1	tr|U7T3C8|U7T3C8_FUSNU4Fe-4Sdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00221PE=4SV=1	MSMS	A375_MHC_IP_R2	2	719.8817138671875	2	719.88089	1437.74723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.928	1	81.673	81.173	82.173	0.74474								0	0	0	0.16302	1	30731	30731		2.9952	0	1				10483	29965	7341	7406	10256	10256					0.04586275461974765
EFILHCTSCAL	11	Unmodified	_EFILHCTSCAL_					0	0	0			REV__ENSG00000137714|ENST00000260270|FDX1	REV__ENSG00000137714|ENST00000260270|FDX1	MSMS	A375_MHC_IP_R2	2	618.7305297851562	2	618.791209	1235.56787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.018	1	93.757	93.257	94.257	0.73902								0	0	0	0.16179	1	35367	35367		9.3831	0	1		+		10484	19027	7342	7407	10257	10257					-0.04049608825926043
EFINPQRLFA	10	Unmodified	_EFINPQRLFA_					0	0	0			REV__ENSG00000138411|ENST00000644978|HECW2;REV__nc|ENSG00000002746|Q76N89-2|HECW1	REV__ENSG00000138411|ENST00000644978|HECW2	MULTI-MSMS	A375_MHC_IP_R2	2	618.9981689453125	2	617.83258	1233.65061	-0.70807	-0.00043747	0.097986	6.0539E-05	-0.61008	-0.00037693	618.3340488238376	74.472	0.61046	75.21	74.857	75.467	0.73752					24	11	3	0	0	0	0.65751	1	28226	28226		9.3831	0	1	4222500	+		10485	19094;16089	7343	7408	10258	10258					0.043127922887151726
EFKERDEW	8	Unmodified	_EFKERDEW_					0	0	0			REV__ENSG00000129484|ENST00000429687|PARP2	REV__ENSG00000129484|ENST00000429687|PARP2	MSMS	A375_MHC_IP_R2	2	569.6815795898438	2	569.76182	1137.50909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.067	1	58.816	58.316	59.316	0.74894								0	0	0	0.16876	1	21965	21965		23.148	2.6948	1		+		10486	18493	7344	7409	10259	10259					-0.05416625804446085
EFKKNKEEV	9	Unmodified	_EFKKNKEEV_					0	0	0		tr|U7SWN9|U7SWN9_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01116PE=4SV=1	tr|U7SWN9|U7SWN9_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01116PE=4SV=1	tr|U7SWN9|U7SWN9_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01116PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	575.740478515625	2	575.808771	1149.60299	-0.17248	-9.9315E-05	-0.14258	-8.2097E-05	-0.31506	-0.00018141	575.8086174080196	33.976	0.45535	33.976	33.798	34.253	0					12	8	2	0	0	0	0.48845	1	11160	11160		32.786	0	1	2937800			10487	29813	7345	7410	10260	10260					0.03417093297844076
EFLGILILP	9	Unmodified	_EFLGILILP_					0	0	0			REV__tr|U7SUZ3|U7SUZ3_FUSNUYokE-likePHdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01062PE=4SV=1	REV__tr|U7SUZ3|U7SUZ3_FUSNUYokE-likePHdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01062PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	508.7166442871094	2	507.815336	1013.61612	-0.57841	-0.00029372	-0.20609	-0.00010466	-0.7845	-0.00039838	507.8151727761363	136.41	0.45757	136.52	136.2	136.66	0.11134					10	4	3	0	0	0	0.43185	1	53606	53606		23.148	5.0134	1	7261100	+		10488	28574	7346	7411	10261	10261					0.1098557614790252
EFLLLGLPI	9	Unmodified	_EFLLLGLPI_					0	0	0		ENSG00000197233|ENST00000335302|OR1J2;ENSG00000136834|ENST00000259357|OR1J1;nc|ENSG00000142163|Q8WZA6|OR1E3	ENSG00000197233|ENST00000335302|OR1J2;nc|ENSG00000142163|Q8WZA6|OR1E3	nc|ENSG00000142163|Q8WZA6|OR1E3	MULTI-MSMS	A375_MHC_IP_R1	1	508.71685791015625	2	507.815336	1013.61612	-0.70277	-0.00035688	0.26642	0.00013529	-0.43635	-0.00022158	507.8153742527009	136.54	0.30826	136.54	136.41	136.72	0					15	5	4	0	0	0	0.3054	1	52608	52608		30.225	7.0764	1	7986400			10489	9134;14648	7347	7412	10262	10262					0.1098557614790252
EFLLLGLPI	9	Unmodified	_EFLLLGLPI_					0	0	0		ENSG00000197233|ENST00000335302|OR1J2;ENSG00000136834|ENST00000259357|OR1J1;nc|ENSG00000142163|Q8WZA6|OR1E3	ENSG00000197233|ENST00000335302|OR1J2;nc|ENSG00000142163|Q8WZA6|OR1E3	nc|ENSG00000142163|Q8WZA6|OR1E3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	507.815336	1013.61612	-0.57841	-0.00029372	-0.20609	-0.00010466	-0.7845	-0.00039838	507.8151727761363	136.41	0.45757	136.52	136.2	136.66	0.11134	-0.0089191	-0.00027027	NaN	30.225	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7261100			10490	9134;14648	7347	7412							0.1098557614790252
EFLVFPTAL	9	Unmodified	_EFLVFPTAL_					0	0	0		ARHGAP21|p.P1642L|1|0.44|ENSG00000107863|chr10:24585364-24585364|G/A|missense_variant	ARHGAP21|p.P1642L|1|0.44|ENSG00000107863|chr10:24585364-24585364|G/A|missense_variant	ARHGAP21|p.P1642L|1|0.44|ENSG00000107863|chr10:24585364-24585364|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1436157226562	2	518.789318	1035.56408	-0.64682	-0.00033556	3.8821	0.002014	3.2353	0.0016784	518.7915284801727	83.693	0.71737	84.432	84.049	84.766	0.73962					16	13	2	0	0	0	0.71541	1	31834	31834		11.64	3.047	1	1260600			10491	172	7348	7413	10263	10263					0.04772412734109821
EFLVTLRLH	9	Unmodified	_EFLVTLRLH_					0	0	0		nc|ENSG00000110046|Q2TAZ0-3|ATG2A;ENSG00000110046|ENST00000377264|ATG2A	nc|ENSG00000110046|Q2TAZ0-3|ATG2A	nc|ENSG00000110046|Q2TAZ0-3|ATG2A	MULTI-MSMS	A375_MHC_IP_R2	2	564.7314453125	2	564.332216	1126.64988	-0.45102	-0.00025452	-0.38423	-0.00021683	-0.83525	-0.00047136	564.3318208768083	78.348	0.60936	79.093	78.828	79.437	0.74416					21	11	3	0	0	0	0.60101	1	29747	29747		14.838	4.0143	1	3262500			10492	2910	7349	7414	10264	10264					0.09161997639648689
EFMEESYY	8	Unmodified	_EFMEESYY_					0	0	0			REV__ENSG00000132464|ENST00000396073|ENAM	REV__ENSG00000132464|ENST00000396073|ENAM	MSMS	A375_MHC_IP_R1	1	549.2109375	2	549.21024	1096.40593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.233	1	77.233	76.733	77.733	0								0	0	0	0.16876	1	28171	28171		10.183	4.423	1		+		10493	18654	7350	7415	10265	10265					-0.13841874307263424
EFNTKYNL	8	Unmodified	_EFNTKYNL_					0	0	0			REV__SCNN1A|p.S537F|1|0.31|ENSG00000111319|chr12:6348746-6348746|G/A|missense_variant	REV__SCNN1A|p.S537F|1|0.31|ENSG00000111319|chr12:6348746-6348746|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	514.6821899414062	2	514.756007	1027.49746	-0.60692	-0.00031242	0.23906	0.00012306	-0.36786	-0.00018936	514.7560913989408	85.323	0.40772	86.059	85.831	86.239	0.73601					9	5	2	0	0	0	0.92636	1	32386	32386		16.942	2.104	1	1107100	+		10494	27926	7351	7416	10266	10266					-0.015188228277793314
EFPGRGGVW	9	Unmodified	_EFPGRGGVW_					0	0	0		nc|ENSG00000182013|Q86V59-2|PNMA8A;ENSG00000182013|ENST00000313683|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	MULTI-MSMS	A375_MHC_IP_R1	1	502.66851806640625	2	502.751059	1003.48756	-0.4046	-0.00020341	0.25788	0.00012965	-0.14671	-7.376E-05	502.7511479698932	64.196	1.3187	64.196	63.786	65.105	0					45	25	2	0	0	0	0.4867	1	23217	23217		20.454	2.3186	1	2270000			10495	8372	7352	7417	10267	10267					-0.014039660424714384
EFPGRGGVW	9	Unmodified	_EFPGRGGVW_					0	0	0		nc|ENSG00000182013|Q86V59-2|PNMA8A;ENSG00000182013|ENST00000313683|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	502.751059	1003.48756	-0.4046	-0.00020341	0.25788	0.00012965	-0.14671	-7.376E-05	502.7511479698932	64.196	1.3187	64.196	63.786	65.105	0	0.049698	0.00013477	NaN	20.454	45	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2270000			10496	8372	7352	7417							-0.014039660424714384
EFPGRGGVW	9	Unmodified	_EFPGRGGVW_					0	0	0		nc|ENSG00000182013|Q86V59-2|PNMA8A;ENSG00000182013|ENST00000313683|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	502.751059	1003.48756	-0.5774	-0.00029029	-0.021158	-1.0637E-05	-0.59856	-0.00030093	502.751045275165	63.357	1.2715	64.097	63.682	64.954	0.74022	-0.049698	-0.0001458	NaN	20.454	43	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2224400			10497	8372	7352	7417							-0.014039660424714384
EFPHLAPDY	9	Unmodified	_EFPHLAPDY_					0	0	0			REV__nc|ENSG00000164934|Q9NV06-2|DCAF13	REV__nc|ENSG00000164934|Q9NV06-2|DCAF13	MSMS	A375_MHC_IP_R1	1	544.7105102539062	2	544.756007	1087.49746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.842	1	55.842	55.342	56.342	0								0	0	0	0.1535	1	19988	19988		15.847	0.078963	1		+		10498	20529	7353	7418	10268	10268					-0.04278822827768636
EFPLREHF	8	Unmodified	_EFPLREHF_					0	0	0			REV__DNM2|p.F370L|1|0.06|ENSG00000079805|chr19:10793835-10793835|T/C|missense_variant	REV__DNM2|p.F370L|1|0.06|ENSG00000079805|chr19:10793835-10793835|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	359.2501525878906	3	358.85042	1073.52943	0.033667	1.2081E-05	-0.25991	-9.3268E-05	-0.22624	-8.1187E-05	358.8502769601006	58.906	0.76326	58.906	58.633	59.397	0					46	14	5	0	0	0	0.87023	1	21141	21141		28.495	2.2264	1	21529000	+		10499	16023	7354	7419	10269	10269					-0.0043941035396528605
EFPLREHF	8	Unmodified	_EFPLREHF_					0	0	0			REV__DNM2|p.F370L|1|0.06|ENSG00000079805|chr19:10793835-10793835|T/C|missense_variant	REV__DNM2|p.F370L|1|0.06|ENSG00000079805|chr19:10793835-10793835|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	359.2498779296875	3	358.85042	1073.52943	-0.47679	-0.0001711	-0.12455	-4.4694E-05	-0.60134	-0.00021579	358.85036099466026	58.091	0.86115	58.84	58.528	59.389	0.74894					45	16	4	0	0	0	0.80467	1	21927	21927		34.932	2.1464	1	20316000	+		10500	16023	7354	7419	10270	10270					-0.0043941035396528605
EFPMTDLDML	10	Unmodified	_EFPMTDLDML_					0	0	0		ENST00000404284.6_1_22:35717823-35727385:+|nuORF;nc|ENSG00000100284|O60784-4|TOM1;ENST00000424387.5_1_22:35695884-35743199:+|nuORF;ENSG00000100284|ENST00000449058|TOM1;nc|ENSG00000100284|O60784-2|TOM1	ENST00000404284.6_1_22:35717823-35727385:+|nuORF	ENST00000404284.6_1_22:35717823-35727385:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	606.2543334960938	2	606.269775	1210.525	-0.57174	-0.00034663	0.32688	0.00019818	-0.24487	-0.00014846	606.2697978251164	65.567	1.7313	66.305	65.715	67.446	0.73812					69	33	4	0	0	0	0.6806	1	24940	24940		14.838	14.838	1	16293000			10501	2151	7355	7420	10271	10271					-0.0718442367406169
EFQALLKRLP	10	Unmodified	_EFQALLKRLP_					0	0	0		nc|ENSG00000198797|Q9C0B6-2|BRINP2;ENST00000478325.1_1_1:177226076-177250661:+|nuORF;ENSG00000198797|ENST00000361539|BRINP2;BRINP2|p.C452Afs*63|1|0.29|ENSG00000198797|chr1:177280530-177280530|T/-|frameshift_variant	nc|ENSG00000198797|Q9C0B6-2|BRINP2	nc|ENSG00000198797|Q9C0B6-2|BRINP2	MULTI-MSMS	A375_MHC_IP_R2	2	405.6183166503906	3	405.580041	1213.71829	-0.31165	-0.0001264	1.2396	0.00050274	0.92791	0.00037634	405.58044056563665	56.38	0.35751	57.13	56.898	57.255	0.75015					12	6	3	0	0	0	0.70741	1	21356	21356		8.9762	1.4992	1	1503100			10502	9330	7356	7421	10272	10272					0.11998242219533495
EFQEGSREYEA	11	Unmodified	_EFQEGSREYEA_					0	0	0		ENSG00000072864|ENST00000396354|NDE1;nc|ENSG00000072864|Q9NXR1-1|NDE1	ENSG00000072864|ENST00000396354|NDE1	ENSG00000072864|ENST00000396354|NDE1	MSMS	A375_MHC_IP_R2	2	672.7181396484375	2	672.788763	1343.56297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.041	1	96.792	96.292	97.292	0.75045								0	0	0	0.16249	1	36472	36472		5.7319	0	1				10503	1552	7357	7422	10273	10273					-0.09506498163341348
EFQMWAPKFYV	11	Unmodified	_EFQMWAPKFYV_					0	0	0		nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3	nc|ENSG00000170004|Q12873-3|CHD3	nc|ENSG00000170004|Q12873-3|CHD3	MSMS	A375_MHC_IP_R1	1	482.4693298339844	3	482.568924	1444.68494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.385	1	22.385	21.885	22.885	0								0	0	0	0.16316	1	6004	6004		2.2527	0.92309	1				10504	14761	7358	7423	10274	10274					-0.019611276147088574
EFRAQFYI	8	Unmodified	_EFRAQFYI_					0	0	0			REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	MULTI-MSMS	A375_MHC_IP_R2	2	537.6734008789062	2	537.274367	1072.53418	-0.91878	-0.00049364	-2.6499	-0.0014237	-3.5686	-0.0019173	537.2736957453894	75.109	0.9142	75.847	75.365	76.279	0.73752					41	17	4	0	0	0	0.73111	1	28493	28493		25.399	3.6527	1	11759000	+		10505	27101	7359	7424	10275	10275					0.0008147378880494216
EFRCFVKENK	10	Unmodified	_EFRCFVKENK_					0	0	0		ENSG00000151465|ENST00000281141|CDC123;ENST00000498747.1_1_10:12259419-12280480:+|nuORF	ENSG00000151465|ENST00000281141|CDC123	ENSG00000151465|ENST00000281141|CDC123	MSMS	A375_MHC_IP_R1	1	433.66278076171875	3	433.888657	1298.64414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.04	1	142.04	141.54	142.54	0								0	0	0	0.15541	1	54505	54505		1.5923	0.63001	1				10506	5908	7360	7425	10276	10276					0.006765310656646761
EFRDPLGY	8	Unmodified	_EFRDPLGY_					0	0	0		nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	MULTI-SECPEP	A375_MHC_IP_R1	1	499.1084289550781	2	498.742899	995.471246	-0.29549	-0.00014737	-0.99241	-0.00049496	-1.2879	-0.00064233	498.7423918382441	70.894	0.71692	70.894	70.545	71.262	0					18	13	2	0	0	0	0.51146	1	25715	25715		52.268	12.311	1	1271000			10507	4020	7361	7426	10277	10277					-0.026670919992284325
EFRDPLGY	8	Unmodified	_EFRDPLGY_					0	0	0		nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	MULTI-SECPEP	A375_MHC_IP_R2	2	499.1081848144531	2	498.742899	995.471246	-0.47314	-0.00023597	-1.3171	-0.00065689	-1.7902	-0.00089287	498.7421973970603	70.308	0.55818	71.042	70.693	71.251	0.73421					14	10	2	0	0	0	0.73563	1	26557	26557		28.487	0	1	945450			10508	4020	7361	7426	10278	10278					-0.026670919992284325
EFRLGQILEV	10	Unmodified	_EFRLGQILEV_					0	0	0			REV__tr|U7SSR3|U7SSR3_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01351PE=3SV=1	REV__tr|U7SSR3|U7SSR3_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01351PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	602.7396240234375	2	602.340238	1202.66592	-0.34754	-0.00020933	-0.99248	-0.00059781	-1.34	-0.00080714	602.3399695535251	98.787	0.71107	98.787	98.557	99.268	0					23	13	3	0	0	0	0.67512	1	36311	36311		15.248	3.0078	1	2724700	+		10509	28445	7362	7427	10279	10279					0.07269659085909552
EFRLRYLSIAH	11	Unmodified	_EFRLRYLSIAH_					0	0	0		FBXL7|p.S350F|1|0.4|ENSG00000183580|chr5:15936759-15936759|C/T|missense_variant	FBXL7|p.S350F|1|0.4|ENSG00000183580|chr5:15936759-15936759|C/T|missense_variant	FBXL7|p.S350F|1|0.4|ENSG00000183580|chr5:15936759-15936759|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	352.3490905761719	4	351.949119	1403.76737	0.036162	1.2727E-05	-0.23234	-8.1772E-05	-0.19618	-6.9045E-05	351.94907434894213	35.351	0.35545	35.351	35.167	35.522	0					14	6	3	0	0	0	0.73404	1	11781	11781		5.0475	2.6127	1	3185400			10510	13983	7363	7428	10280	10280					0.08163530508477379
EFRLRYLSIAH	11	Unmodified	_EFRLRYLSIAH_					0	0	0		FBXL7|p.S350F|1|0.4|ENSG00000183580|chr5:15936759-15936759|C/T|missense_variant	FBXL7|p.S350F|1|0.4|ENSG00000183580|chr5:15936759-15936759|C/T|missense_variant	FBXL7|p.S350F|1|0.4|ENSG00000183580|chr5:15936759-15936759|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	469.6636047363281	3	468.929733	1403.76737	-0.86679	-0.00040646	0.060408	2.8327E-05	-0.80638	-0.00037814	468.92974336651656	34.432	0.61034	35.184	34.904	35.514	0.75225					32	11	4	0	0	0	0.70017	1	12380	12380		15.538	4.4732	1	23958000			10511	13983	7363	7428	10281	10281					0.08163530508477379
EFRLRYLSIAH	11	Unmodified	_EFRLRYLSIAH_					0	0	0		FBXL7|p.S350F|1|0.4|ENSG00000183580|chr5:15936759-15936759|C/T|missense_variant	FBXL7|p.S350F|1|0.4|ENSG00000183580|chr5:15936759-15936759|C/T|missense_variant	FBXL7|p.S350F|1|0.4|ENSG00000183580|chr5:15936759-15936759|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	468.929733	1403.76737	-0.86679	-0.00040646	0.060408	2.8327E-05	-0.80638	-0.00037814	468.92974336651656	34.432	0.61034	35.184	34.904	35.514	0.75225	-0.091903	9.0926E-05	NaN	15.538	32	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23958000			10512	13983	7363	7428							0.08163530508477379
EFRQYYESGQ	10	Unmodified	_EFRQYYESGQ_					0	0	0		tr|U7SGG1|U7SGG1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxin(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02208PE=4SV=1;tr|U7T3F2|U7T3F2_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00619PE=4SV=1	tr|U7SGG1|U7SGG1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxin(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02208PE=4SV=1	tr|U7SGG1|U7SGG1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxin(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02208PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	654.797119140625	2	653.788566	1305.56258	-1.0645	-0.00069599	-0.46361	-0.0003031	-1.5282	-0.00099909	653.7879143229934	23.957	0.30713	24.587	24.435	24.742	0.63015					11	5	3	0	0	0	0.71466	1	7774	7774		5.7319	0.83484	1	3701800			10513	29404	7364	7429	10282	10282					-0.07797873092590635
EFRRQLRRWRR	11	Unmodified	_EFRRQLRRWRR_					0	0	0		ENST00000403729.6_1_4:80993792-80994179:-|nuORF	ENST00000403729.6_1_4:80993792-80994179:-|nuORF	ENST00000403729.6_1_4:80993792-80994179:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	553.1755981445312	3	553.657341	1657.95019	-0.59853	-0.00033138	1.1443	0.00063356	0.54579	0.00030218	553.6579189509458	58.255	0.55738	58.255	57.974	58.531	0					16	10	2	0	0	0	1.0011	1	20992	20992		0.45452	0.37117	1	1381900			10514	11577	7365	7430	10283	10283					0.14753522413616338
EFRRQLRRWRR	11	Unmodified	_EFRRQLRRWRR_					0	0	0		ENST00000403729.6_1_4:80993792-80994179:-|nuORF	ENST00000403729.6_1_4:80993792-80994179:-|nuORF	ENST00000403729.6_1_4:80993792-80994179:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	553.657341	1657.95019	-1.1666	-0.00064589	1.3641	0.00075522	0.19747	0.00010933	553.6578859011489	57.193	0.50959	57.943	57.662	58.172	0.75015	-0.15602	0.00019571	NaN	0.45452	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2175100			10515	11577	7365	7430							0.14753522413616338
EFRYRMYQTQV	11	Unmodified	_EFRYRMYQTQV_					0	0	0		ENSG00000134247|ENST00000393203|PTGFRN;ENST00000496699.1_1_1:117509714-117517097:+|nuORF	ENSG00000134247|ENST00000393203|PTGFRN	ENSG00000134247|ENST00000393203|PTGFRN	MSMS	A375_MHC_IP_R2	2	507.63177490234375	3	507.582004	1519.72418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.994	1	77.737	77.237	78.237	0.74293								0	0	0	0.16275	1	29234	29234		4.4062	1.9714	1				10516	4558	7366	7431	10284	10284					-0.014890273311493729
EFSHSSSLDF	10	Unmodified	_EFSHSSSLDF_					0	0	0		ENST00000318709.8_1_7:32627221-32627503:+|nuORF	ENST00000318709.8_1_7:32627221-32627503:+|nuORF	ENST00000318709.8_1_7:32627221-32627503:+|nuORF	MSMS	A375_MHC_IP_R2	2	578.2482299804688	2	578.251286	1154.48802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.78	1	142.81	142.31	143.31	0.030731								0	0	0	0.15435	1	55817	55817		6.7232	2.7788	1				10517	10676	7367	7432	10285	10285					-0.08304635903959934
EFSKSQVEW	9	Unmodified	_EFSKSQVEW_					0	0	0		CPSF2|p.L682Vfs*4|1|0.2|ENSG00000165934|chr14:92159204-92159205|TC/-|frameshift_variant;ENSG00000165934|ENST00000298875|CPSF2	CPSF2|p.L682Vfs*4|1|0.2|ENSG00000165934|chr14:92159204-92159205|TC/-|frameshift_variant	CPSF2|p.L682Vfs*4|1|0.2|ENSG00000165934|chr14:92159204-92159205|TC/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	570.1985473632812	2	570.272021	1138.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.563	1	42.563	42.063	43.063	0								0	0	0	0.041892	1	14755	14755		56.177	12.195	1				10518	651	7368	7433	10286	10286					-0.03423455144616128
EFSLIDDQLTY	11	Unmodified	_EFSLIDDQLTY_					0	0	0			REV__ENSG00000117408|ENST00000372343|IPO13	REV__ENSG00000117408|ENST00000372343|IPO13	MULTI-MSMS	A375_MHC_IP_R1	1	672.781005859375	2	672.321908	1342.62926	-0.48384	-0.0003253	0.14019	9.425E-05	-0.34365	-0.00023105	672.321944453093	117.86	0.40562	117.86	117.61	118.02	0					14	7	2	0	0	0	0.54446	1	43233	43233		27.629	1.3607	1	7361900	+		10519	18006	7369	7434	10287	10287					-0.02834682321326909
EFSPGLTKGL	10	Unmodified	_EFSPGLTKGL_					0	0	0			REV__tr|U7T3F9|U7T3F9_FUSNUPACdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00261PE=4SV=1	REV__tr|U7T3F9|U7T3F9_FUSNUPACdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00261PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	524.6891479492188	2	524.787307	1047.56006	-0.32096	-0.00016843	2.4408	0.0012809	2.1199	0.0011125	525.2892156882125	93.986	0.91164	94.731	94.262	95.173	0.74473					43	17	4	0	0	0	0.6806	1	35749	35749		14.838	2.3067	1	2666600	+		10520	28770	7370	7435	10288	10288					0.03818323240443533
EFSRTHMTL	9	Unmodified	_EFSRTHMTL_					0	0	0		ENSG00000139514|ENST00000380752|SLC7A1	ENSG00000139514|ENST00000380752|SLC7A1	ENSG00000139514|ENST00000380752|SLC7A1	MULTI-SECPEP	A375_MHC_IP_R2	2	561.1380004882812	2	561.274041	1120.53353	-1.2398	-0.00069587	1.0223	0.00057377	-0.21755	-0.0001221	561.2747953807753	36.919	0.45668	37.69	37.41	37.867	0.7709					11	8	2	0	0	0	0.58271	1	13517	13517		26.884	9.9414	1	3218200			10521	5082	7371	7436	10289	10289					-0.021916889225394698
EFSSFSVWT	9	Unmodified	_EFSSFSVWT_					0	0	0			REV__USP35|p.R897W|1|0.29|ENSG00000118369|chr11:78210544-78210544|C/T|missense_variant	REV__USP35|p.R897W|1|0.29|ENSG00000118369|chr11:78210544-78210544|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	364.62530517578125	3	363.834435	1088.48148	0.034936	1.2711E-05	2.5776	0.00093784	2.6126	0.00095055	364.1683186813547	80.47	0.35313	80.47	80.34	80.693	0					8	6	2	0	0	0	0.78348	1	29392	29392		4.897	1.5774	1	373340	+		10522	28969	7372	7437	10290	10290					-0.059225290646509166
EFSTTKLYK	9	Unmodified	_EFSTTKLYK_					0	0	0			REV__nc|ENSG00000156042|Q5T0N1-2|CFAP70	REV__nc|ENSG00000156042|Q5T0N1-2|CFAP70	MULTI-MSMS	A375_MHC_IP_R1	1	559.70361328125	2	558.800414	1115.58628	-0.37952	-0.00021208	-1.5478	-0.00086491	-1.9273	-0.001077	558.7983922952292	72.621	1.1144	72.621	71.866	72.98	0					48	21	4	0	0	0	0.64808	1	26285	26285		11.64	2.2572	1	8065300	+		10523	19959	7373	7438	10291	10291					0.033105924118899566
EFSVIIAQLLG	11	Unmodified	_EFSVIIAQLLG_					0	0	0		ADAM18|p.G312E|3|0.25|ENSG00000168619|chr8:39645363-39645363|G/A|missense_variant	ADAM18|p.G312E|3|0.25|ENSG00000168619|chr8:39645363-39645363|G/A|missense_variant	ADAM18|p.G312E|3|0.25|ENSG00000168619|chr8:39645363-39645363|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	594.7398071289062	2	595.344989	1188.67542	-0.40222	-0.00023946	-1.2538	-0.00074642	-1.656	-0.00098588	595.3435800719308	136.77	1.7932	136.88	135.43	137.22	0.11134					46	34	2	0	0	0	0.99227	1	53437	53437		5.7319	2.1354	1	2813400			10524	42	7374	7439	10292	10292					0.08863427371420585
EFTDHYIEVVK	11	Unmodified	_EFTDHYIEVVK_					0	0	0		ENSG00000123815|ENST00000324464|COQ8B;nc|ENSG00000123815|Q96D53-2|COQ8B	ENSG00000123815|ENST00000324464|COQ8B	ENSG00000123815|ENST00000324464|COQ8B	MULTI-MSMS	A375_MHC_IP_R1	1	690.7449951171875	2	690.345717	1378.67688	-0.51127	-0.00035295	0.13102	9.045E-05	-0.38025	-0.0002625	690.3456894576059	56.149	0.60671	56.149	55.841	56.447	0					29	11	3	0	0	0	0.41028	1	20078	20078		38.176	5.3899	1	7691600			10525	3859	7375	7440	10293	10293					0.0026901666947196645
EFTDHYIEVVK	11	Unmodified	_EFTDHYIEVVK_					0	0	0		ENSG00000123815|ENST00000324464|COQ8B;nc|ENSG00000123815|Q96D53-2|COQ8B	ENSG00000123815|ENST00000324464|COQ8B	ENSG00000123815|ENST00000324464|COQ8B	MULTI-MSMS	A375_MHC_IP_R1	1	690.745361328125	2	690.345717	1378.67688	-0.6139	-0.00042381	0.40493	0.00027954	-0.20897	-0.00014426	690.345746900134	57.614	0.6605	57.614	57.313	57.974	0					30	12	4	0	0	0	0.41028	1	20642	20642		38.176	5.3899	1	6164700			10526	3859	7375	7440	10294	10294					0.0026901666947196645
EFTDHYIEVVK	11	Unmodified	_EFTDHYIEVVK_					0	0	0		ENSG00000123815|ENST00000324464|COQ8B;nc|ENSG00000123815|Q96D53-2|COQ8B	ENSG00000123815|ENST00000324464|COQ8B	ENSG00000123815|ENST00000324464|COQ8B	MULTI-MSMS	A375_MHC_IP_R2	2	690.7451171875	2	690.345717	1378.67688	-0.75456	-0.00052091	0.011046	7.6255E-06	-0.74352	-0.00051328	690.3455352240678	55.562	0.7611	56.312	55.881	56.642	0.75075					30	14	3	0	0	0	0.49816	1	20954	20954		31.268	5.0002	1	9508100			10527	3859	7375	7440	10295	10295					0.0026901666947196645
EFTDHYIEVVK	11	Unmodified	_EFTDHYIEVVK_					0	0	0		ENSG00000123815|ENST00000324464|COQ8B;nc|ENSG00000123815|Q96D53-2|COQ8B	ENSG00000123815|ENST00000324464|COQ8B	ENSG00000123815|ENST00000324464|COQ8B	MULTI-MSMS	A375_MHC_IP_R2	2	690.7449340820312	2	690.345717	1378.67688	-1.1053	-0.00076303	-0.1435	-9.9067E-05	-1.2488	-0.00086209	690.3455424787969	56.987	0.61233	57.737	57.408	58.02	0.75015					32	11	4	0	0	0	0.41028	1	21500	21500		38.176	5.3899	1	8914700			10528	3859	7375	7440	10296	10296					0.0026901666947196645
EFTEQYDLNT	10	Unmodified	_EFTEQYDLNT_					0	0	0			REV__ENSG00000160111|ENST00000443236|CPAMD8	REV__ENSG00000160111|ENST00000443236|CPAMD8	MULTI-MSMS	A375_MHC_IP_R1	1	630.6744995117188	2	630.274958	1258.53536	-0.53467	-0.00033699	0.23216	0.00014632	-0.30251	-0.00019067	630.2750617827771	50.075	0.61408	50.075	49.743	50.357	0					25	11	3	0	0	0	0.59108	1	17702	17702		21.537	4.4241	1	6116800	+		10529	20146	7376	7441	10297	10297					-0.08356401423611715
EFTEYYYPD	9	Unmodified	_EFTEYYYPD_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B;nc|ENSG00000111647|A0JNW5-2|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MULTI-MSMS	A375_MHC_IP_R1	1	614.1476440429688	2	613.748044	1225.48154	-0.22401	-0.00013749	-0.3948	-0.00024231	-0.61882	-0.0003798	613.7478587991262	50.032	0.61408	50.032	49.743	50.357	0					19	11	3	0	0	0	0.61998	1	17742	17742		13.906	3.8321	1	2923600			10530	3006	7377	7442	10298	10298					-0.1221857385532985
EFTEYYYPD	9	Unmodified	_EFTEYYYPD_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B;nc|ENSG00000111647|A0JNW5-2|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MULTI-SECPEP	A375_MHC_IP_R1	1	409.90118408203125	3	409.501122	1225.48154	0.067213	2.7524E-05	0.12603	5.161E-05	0.19324	7.9134E-05	409.5010760305187	50.038	0.51196	50.038	49.743	50.254	0					17	9	3	0	0	0	0.79429	1	17744	17744		2.086	2.086	1	2354000			10531	3006	7377	7442	10299	10299					-0.1221857385532985
EFTEYYYPD	9	Unmodified	_EFTEYYYPD_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B;nc|ENSG00000111647|A0JNW5-2|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MULTI-MATCH	A375_MHC_IP_R2	2		3	409.501122	1225.48154	-0.27159	-0.00011121	0.32804	0.00013433	0.056455	2.3118E-05	409.5012088575414	49.48	0.50455	50.237	49.944	50.449	0.75737	0.099483	0.00013719	NaN	2.086	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1355600			10532	3006	7377	7442							-0.1221857385532985
EFTGRHNAH	9	Unmodified	_EFTGRHNAH_					0	0	0		APOB|p.D3022N|1|0.38|ENSG00000084674|chr2:21007804-21007804|C/T|missense_variant	APOB|p.D3022N|1|0.38|ENSG00000084674|chr2:21007804-21007804|C/T|missense_variant	APOB|p.D3022N|1|0.38|ENSG00000084674|chr2:21007804-21007804|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	534.6845703125	2	534.752121	1067.48969	-0.73047	-0.00039062	-1.8489	-0.0009887	-2.5794	-0.0013793	535.252758279088	27.423	0.5572	28.102	27.945	28.502	0.67857					14	10	3	0	0	0	0.61998	1	9432	9432		13.906	0.86358	1	2688500			10533	159	7378	7443	10300	10300					-0.04135537304682657
EFTKELVD	8	Unmodified	_EFTKELVD_					0	0	0		tr|U7SHD7|U7SHD7_FUSNUPF03932familyproteinCutCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cutCPE=3SV=1	tr|U7SHD7|U7SHD7_FUSNUPF03932familyproteinCutCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cutCPE=3SV=1	tr|U7SHD7|U7SHD7_FUSNUPF03932familyproteinCutCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cutCPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	980.5554809570312	1	980.493504	979.486227	-0.064098	-6.2848E-05	-2.0945	-0.0020536	-2.1586	-0.0021165	980.4927907150025	128.81	0.80869	129.05	128.76	129.57	0.23946					21	15	2	0	0	0	0.75805	1	50632	50632		18.135	2.2878	1	29561000			10534	29423	7379	7444	10301	10301					-0.004336449219181304
EFTNDWGKY	9	Unmodified	_EFTNDWGKY_					0	0	0		ENST00000487628.1_1_2:191224783-191227442:+|nuORF	ENST00000487628.1_1_2:191224783-191227442:+|nuORF	ENST00000487628.1_1_2:191224783-191227442:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	580.7315673828125	2	580.256371	1158.49819	-0.68721	-0.00039876	0.63787	0.00037013	-0.049347	-2.8634E-05	580.2566555783026	56.609	0.30618	57.359	57.203	57.51	0.75014					7	5	2	0	0	0	0.75466	1	21345	21345		7.9102	2.1783	1	988860			10535	12599	7380	7445	10302	10302					-0.07472028178699475
EFTRGQRIF	9	Unmodified	_EFTRGQRIF_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	A375_MHC_IP_R1	1	384.9478759765625	3	385.208607	1152.60399	0.072973	2.811E-05	-0.46278	-0.00017827	-0.3898	-0.00015016	385.20847328379307	25.791	0.404	25.791	25.613	26.017	0					12	7	2	0	0	0	0.74412	1	7675	7675		14.405	0	1	2887300			10536	7640	7381	7446	10303	10303					0.03379352457409368
EFTRGTPCL	9	Unmodified	_EFTRGTPCL_					0	0	0			REV__ENST00000593581.5_1_19:8455333-8455501:-|nuORF	REV__ENST00000593581.5_1_19:8455333-8455501:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	513.163818359375	2	512.250034	1022.48552	-0.64476	-0.00033028	-3.2173	-0.0016481	-3.8621	-0.0019783	512.7489003981709	66.055	0.86263	66.055	65.666	66.529	0					33	16	3	0	0	0	0.55818	1	23922	23922		16.942	2.3606	1	1289400	+		10537	26458	7382	7447	10304	10304					-0.02482762842601005
EFTSEVLDY	9	Unmodified	_EFTSEVLDY_					0	0	0			REV__nc|ENSG00000107447|P04053-2|DNTT	REV__nc|ENSG00000107447|P04053-2|DNTT	MULTI-SECPEP	A375_MHC_IP_R1	1	552.1502685546875	2	551.750587	1101.48662	-0.3212	-0.00017722	0.26567	0.00014658	-0.055533	-3.064E-05	551.7505185750715	109.32	0.81403	109.32	108.86	109.68	0					37	15	3	0	0	0	0.39388	1	40041	40041		39.957	5.8549	1	5642300	+		10538	17486	7383	7448	10305	10305					-0.06006269992712987
EFVLHIKKKQR	11	Unmodified	_EFVLHIKKKQR_					0	0	0			REV__nc|ENSG00000273345|Q8IVW4-2|CDKL3	REV__nc|ENSG00000273345|Q8IVW4-2|CDKL3	MULTI-MSMS	A375_MHC_IP_R1	1	476.0330810546875	3	475.961144	1424.8616	-0.73146	-0.00034815	0.070156	3.3392E-05	-0.66131	-0.00031476	475.96126721984876	84.414	2.5377	84.414	84.041	86.578	0					173	49	6	0	0	0	0.73795	1	31594	31594		1.3296	0.21989	1	347220000	+		10539	16148	7384	7449	10306	10306					0.16616669330596778
EFWGKAGDMSH	11	Unmodified	_EFWGKAGDMSH_					0	0	0			REV__ENST00000473581.5_1_X:48834665-48847670:-|nuORF	REV__ENST00000473581.5_1_X:48834665-48847670:-|nuORF	MSMS	A375_MHC_IP_R2	2	632.6834716796875	2	632.774405	1263.53426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.158	1	82.901	82.401	83.401	0.74293								0	0	0	0.1624	1	31208	31208		7.609	2.8529	1		+		10540	16541	7385	7450	10307	10307					-0.08696894273498401
EFYDRLNY	8	Unmodified	_EFYDRLNY_					0	0	0			REV__ENST00000472163.1_1_3:75263799-75264780:+|nuORF	REV__ENST00000472163.1_1_3:75263799-75264780:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	561.7266235351562	2	560.258914	1118.50327	-0.50689	-0.00028399	-0.50342	-0.00028205	-1.0103	-0.00056603	560.2588459228297	61.35	2.9647	61.35	60.77	63.735	0					152	57	5	0	0	0	0.77603	1	22002	22002		9.3474	1.1919	1	65167000	+		10541	20968	7386	7451	10308	10308					-0.05123724316104017
EFYHALDSENM	11	Unmodified	_EFYHALDSENM_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MSMS	A375_MHC_IP_R1	1	678.2941284179688	2	678.28226	1354.54997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.059	1	67.059	66.559	67.559	0								0	0	0	0.16223	1	24296	24296		7.1017	1.3699	1				10542	3361	7387	7452	10309	10309					-0.11312652547144353
EFYRYFEY	8	Unmodified	_EFYRYFEY_					0	0	0			REV__ENST00000546398.5_1_12:95611596-95687545:+|nuORF	REV__ENST00000546398.5_1_12:95611596-95687545:+|nuORF	MSMS	A375_MHC_IP_R1	1	608.7692260742188	2	608.769114	1215.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.6	1	146.6	146.1	147.1	0								0	0	0	0.16876	1	56076	56076		0.69038	0	1		+		10543	16294	7388	7453	10310	10310					-0.07546553656288779
EFYRYFEY	8	Unmodified	_EFYRYFEY_					0	0	0			REV__ENST00000546398.5_1_12:95611596-95687545:+|nuORF	REV__ENST00000546398.5_1_12:95611596-95687545:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	608.6671752929688	2	608.769114	1215.52368	-0.68395	-0.00041637	-0.13696	-8.3376E-05	-0.82091	-0.00049974	608.7688918181923	24.023	0.20478	24.663	24.547	24.752	0.64041					5	3	2	0	0	0	0.8211	1	7848	7848		38.151	29.996	1	3315800	+		10544	16294	7388	7453	10311	10311					-0.07546553656288779
EFYSEWET	8	Unmodified	_EFYSEWET_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.G2197Dfs*159|1|0.09|ENSG00000065526|chr1:15932821-15932822|-/ACCAGAGG|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN;SPEN|p.G2197Dfs*159|1|0.09|ENSG00000065526|chr1:15932821-15932822|-/ACCAGAGG|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	A375_MHC_IP_R1	1	546.1426391601562	2	545.72183	1089.42911	-0.47483	-0.00025913	-0.33086	-0.00018056	-0.80569	-0.00043968	545.7220055365691	70.789	1.0233	70.789	70.341	71.364	0					40	19	3	0	0	0	0.77624	1	25833	25833		8.5933	0	1	7555000			10545	1386;29233	7389	7454	10312	10312					-0.1120311219829091
EFYTVDGQKF	10	Unmodified	_EFYTVDGQKF_					0	0	0		ENSG00000135048|ENST00000377044|CEMIP2;nc|ENSG00000135048|Q9UHN6-2|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	617.6641845703125	2	617.292953	1232.57135	-0.61083	-0.00037706	-1.4507	-0.0008955	-2.0615	-0.0012726	617.7931581003007	67.699	0.30392	68.435	68.308	68.612	0.73631					7	5	2	0	0	0	0.81532	1	25701	25701		19.362	4.5237	1	1289700			10546	4638	7390	7455	10313	10313					-0.035628994561193394
EFYVVHTNY	9	Unmodified	_EFYVVHTNY_					0	0	0		AMBP|p.S120F|1|0.4|ENSG00000106927|chr9:114074131-114074131|G/A|missense_variant	AMBP|p.S120F|1|0.4|ENSG00000106927|chr9:114074131-114074131|G/A|missense_variant	AMBP|p.S120F|1|0.4|ENSG00000106927|chr9:114074131-114074131|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	586.2232055664062	2	586.274564	1170.53457	-0.8875	-0.00052032	-0.36343	-0.00021307	-1.2509	-0.00073339	586.274590022347	58.654	1.2702	59.403	58.879	60.149	0.74894					72	24	5	0	0	0	0.63811	1	22096	22096		12.532	1.7076	1	65531000			10547	121	7391	7456	10314	10314					-0.043871512820032876
EGALGQLL	8	Unmodified	_EGALGQLL_					0	0	0		SLCO6A1|p.G432E|1|0.41|ENSG00000205359|chr5:102420003-102420003|C/T|missense_variant	SLCO6A1|p.G432E|1|0.41|ENSG00000205359|chr5:102420003-102420003|C/T|missense_variant	SLCO6A1|p.G432E|1|0.41|ENSG00000205359|chr5:102420003-102420003|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	401.1290283203125	2	400.729261	799.443968	-0.21106	-8.4578E-05	-0.052636	-2.1093E-05	-0.2637	-0.00010567	400.729303426005	35.735	0.71289	36.498	36.233	36.946	0.76338					25	13	3	0	0	0	0.40488	1	12972	12972		48.346	3.9388	1	3379300			10548	29201	7392	7457	10315	10315					0.03622424460388629
EGAMEDEEL	9	Unmodified	_EGAMEDEEL_					0	0	0		ENSG00000053254|ENST00000557258|FOXN3;nc|ENSG00000053254|O00409|FOXN3	ENSG00000053254|ENST00000557258|FOXN3	ENSG00000053254|ENST00000557258|FOXN3	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1029663085938	2	511.70278	1021.39101	-1.1611	-0.00059412	0.68521	0.00035062	-0.47586	-0.0002435	511.7032967911953	52.32	0.55503	53.072	52.882	53.437	0.75225					18	10	2	0	0	0	0.71541	1	19733	19733		11.64	0	1	2507300			10549	1244	7393	7458	10316	10316					-0.11883366175243282
EGANLEYL	8	Unmodified	_EGANLEYL_					0	0	0		ENSG00000179562|ENST00000321407|GCC1	ENSG00000179562|ENST00000321407|GCC1	ENSG00000179562|ENST00000321407|GCC1	MULTI-SECPEP	A375_MHC_IP_R1	1	454.6476745605469	2	454.721633	907.428712	-0.12368	-5.6241E-05	-1.8305	-0.00083236	-1.9542	-0.00088861	454.72051738039784	45.928	0.45689	45.928	45.738	46.195	0					12	8	2	0	0	0	0.91495	1	16075	16075		1.8442	0	1	1059900			10550	8238	7394	7459	10317	10317					-0.02870487127472643
EGAVPHDG	8	Unmodified	_EGAVPHDG_					0	0	0			REV__ENST00000602076.5_1_19:49949641-49950083:-|nuORF	REV__ENST00000602076.5_1_19:49949641-49950083:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	782.0973510742188	1	781.347508	780.340232	-0.93243	-0.00072855	-1.8173	-0.0014199	-2.7497	-0.0021485	781.3488689263114	125.7	0.20306	126	125.92	126.12	0.2951					5	3	2	0	0	0	0.972	1	49123	49123		4.756	2.4533	1	3454200	+		10551	26508	7395	7460	10318	10318					-0.05872482647282595
EGAYFTYKE	9	Unmodified	_EGAYFTYKE_					0	0	0			REV__TTN|p.G2600E|2|0.42|ENSG00000155657|chr2:178773165-178773165|C/T|missense_variant	REV__TTN|p.G2600E|2|0.42|ENSG00000155657|chr2:178773165-178773165|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	554.6620483398438	2	554.253297	1106.49204	-0.79267	-0.00043934	3.2953	0.0018264	2.5026	0.0013871	554.2555195013506	31.758	0.3539	32.495	32.35	32.704	0.73691					8	6	2	0	0	0	0.32092	1	11334	11334		29.082	0.58707	1	1568700	+		10552	28931	7396	7461	10319	10319					-0.056945464102454935
EGCDCCAL	8	Unmodified	_EGCDCCAL_					0	0	0		ENST00000496692.6_1_1:161551173-161559386:+|nuORF;ENST00000466542.6_1_1:161551173-161559386:+|nuORF	ENST00000496692.6_1_1:161551173-161559386:+|nuORF	ENST00000496692.6_1_1:161551173-161559386:+|nuORF	MSMS	A375_MHC_IP_R2	2	407.18414306640625	2	407.132424	812.250296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.87	1	87.603	87.103	88.103	0.733								0	0	0	0.16876	1	33036	33036		2.8892	2.0956	1				10553	12263	7397	7462	10320	10320					-0.16333939634046146
EGCGDEDDCD	10	Unmodified	_EGCGDEDDCD_					0	0	0			REV__GPC5|p.G506E|1|0.44|ENSG00000179399|chr13:92144945-92144945|G/A|missense_variant	REV__GPC5|p.G506E|1|0.44|ENSG00000179399|chr13:92144945-92144945|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	529.2072143554688	2	529.139686	1056.26482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.766	1	81.511	81.011	82.011	0.74474								0	0	0	0.15629	1	30668	30668		0.40072	0.40072	1		+		10554	26695	7398	7463	10321	10321					-0.261062407428426
EGDAASDWLL	10	Unmodified	_EGDAASDWLL_					0	0	0			REV__ENST00000318430.9_1_17:76129587-76130059:+|nuORF	REV__ENST00000318430.9_1_17:76129587-76130059:+|nuORF	MSMS	A375_MHC_IP_R2	2	538.7112426757812	2	538.748379	1075.4822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.973	1	75.71	75.21	76.21	0.73752								0	0	0	0.15308	1	28457	28457		10.824	2.2306	1		+		10555	23552	7399	7464	10322	10322					-0.05251734415628562
EGDDEGEDDDD	11	Unmodified	_EGDDEGEDDDD_					0	0	0			REV__nc|ENSG00000163380|Q0VAK6-2|LMOD3	REV__nc|ENSG00000163380|Q0VAK6-2|LMOD3	MSMS	A375_MHC_IP_R2	2	605.6767578125	2	605.678741	1209.34293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.81	1	18.406	17.906	18.906	0.59616								0	0	0	0.16354	1	5260	5260		0.30703	0	1		+		10556	20356	7400	7465	10323	10323					-0.25336813352259924
EGDDHNDCM	9	Unmodified	_EGDDHNDCM_					0	0	0			REV__ENSG00000005810|ENST00000544440|MYCBP2	REV__ENSG00000005810|ENST00000544440|MYCBP2	MSMS	A375_MHC_IP_R2	2	518.1804809570312	2	518.160756	1034.30696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.648	1	37.419	36.919	37.919	0.7709								0	0	0	0.15486	1	13373	13373		2.0598	0	1		+		10557	16125	7401	7466	10324	10324					-0.20882220543808216
EGDDHNDCM	9	Unmodified	_EGDDHNDCM_					0	0	0			REV__ENSG00000005810|ENST00000544440|MYCBP2	REV__ENSG00000005810|ENST00000544440|MYCBP2	MSMS	A375_MHC_IP_R2	2	518.2155151367188	2	518.160756	1034.30696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.05	1	42.824	42.324	43.324	0.77451								0	0	0	0.15486	1	15631	15631		2.0598	0	1		+		10558	16125	7401	7466	10325	10325					-0.20882220543808216
EGDDTCEWY	9	Unmodified	_EGDDTCEWY_					0	0	0			REV__ENSG00000188334|ENST00000344839|BSPH1	REV__ENSG00000188334|ENST00000344839|BSPH1	MULTI-SECPEP	A375_MHC_IP_R1	1	559.5936279296875	2	559.192579	1116.37061	-0.49664	-0.00027772	1.5643	0.00087476	1.0677	0.00059704	559.1943598820326	100.04	0.70865	100.04	99.774	100.48	0					21	8	3	0	0	0	0.71541	1	36766	36766		16.942	2.3606	1	2896000	+		10559	22086	7402	7467	10326	10326					-0.1829253683506522
EGDGDRDAKDI	11	Unmodified	_EGDGDRDAKDI_					0	0	0			REV__CETN1|p.E148K|1|0.34|ENSG00000177143|chr18:580850-580850|G/A|missense_variant	REV__CETN1|p.E148K|1|0.34|ENSG00000177143|chr18:580850-580850|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	595.2041625976562	2	595.767831	1189.52111	-0.61678	-0.00036746	-0.94391	-0.00056235	-1.5607	-0.00092981	596.2685566807556	91.007	0.40526	91.007	90.794	91.199	0					11	7	2	0	0	0	0.99332	1	33386	33386		6.1918	2.5954	1	3676900	+		10560	15641	7403	7468	10327	10327					-0.06607053851894307
EGDLRERKK	9	Unmodified	_EGDLRERKK_					0	0	0			REV__nc|ENSG00000159023|P11171-4|EPB41	REV__nc|ENSG00000159023|P11171-4|EPB41	MULTI-MSMS	A375_MHC_IP_R1	1	377.59649658203125	3	377.5474	1129.62037	0.19267	7.2744E-05	1.3162	0.00049693	1.5089	0.00056968	377.54790388426545	19.366	0.69068	19.366	19.238	19.928	0					23	13	2	0	0	0	0.60982	1	4958	4958		14.405	0.18721	1	3732800	+		10561	20098	7404	7469	10328	10328					0.060744336235075025
EGDNRALDRV	10	Unmodified	_EGDNRALDRV_					0	0	0			REV__nc|ENSG00000119899|Q9NRA2-2|SLC17A5	REV__nc|ENSG00000119899|Q9NRA2-2|SLC17A5	MSMS	A375_MHC_IP_R1	1	572.8961181640625	2	572.788901	1143.56325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.32	1	113.32	112.82	113.82	0								0	0	0	0.15265	1	41539	41539		12.241	1.4167	1		+		10562	18099	7405	7470	10329	10329					-0.0027903365287329507
EGDQCCCE	8	Unmodified	_EGDQCCCE_					0	0	0			REV__ENSG00000119681|ENST00000261978|LTBP2	REV__ENSG00000119681|ENST00000261978|LTBP2	MULTI-SECPEP	A375_MHC_IP_R1	1	885.7723999023438	1	886.237565	885.230289	0.18109	0.00016049	-3.5369	-0.0031345	-3.3558	-0.002974	886.2343748317775	127.26	0.20183	127.26	127.16	127.37	0					5	3	2	0	0	0	0.972	1	48713	48713		0	0	1	6795600	+		10563	18082	7406	7471	10330	10330					-0.21691735364640863
EGDSLRQTSS	10	Unmodified	_EGDSLRQTSS_					0	0	0			REV__ENSG00000060749|ENST00000650167|QSER1	REV__ENSG00000060749|ENST00000650167|QSER1	MULTI-MSMS	A375_MHC_IP_R1	1	540.6734619140625	2	540.251817	1078.48908	-0.8519	-0.00046024	-1.2952	-0.00069973	-2.1471	-0.00116	540.2511744204112	39.911	0.65898	39.911	39.441	40.1	0					17	12	2	0	0	0	0.6502	1	13749	13749		17.113	2.2746	1	2023600	+		10564	16446	7407	7472	10331	10331					-0.04702421535034773
EGDVELLPSDH	11	Unmodified	_EGDVELLPSDH_					0	0	0		nc|ENSG00000048028|Q96RU2-2|USP28;USP28|p.V940Gfs*26|1|0.33|ENSG00000048028|chr11:113803201-113803202|-/C|frameshift_variant;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28;nc|ENSG00000048028|Q96RU2-3|USP28;ENST00000545608.5_2_11:113688400-113704155:-|nuORF;ENST00000540438.5_1_11:113691037-113702685:-|nuORF	nc|ENSG00000048028|Q96RU2-2|USP28	nc|ENSG00000048028|Q96RU2-2|USP28	MULTI-MSMS	A375_MHC_IP_R1	1	606.1825561523438	2	605.78295	1209.55135	-0.18154	-0.00010997	-1.0541	-0.00063853	-1.2356	-0.0007485	605.7821388891572	22.999	0.55272	22.999	22.572	23.125	0					16	10	3	0	0	0	0.51633	1	6294	6294		29.841	19.69	1	2712000			10565	14463	7408	7473	10332	10332					-0.045046951867107055
EGDVELLPSDH	11	Unmodified	_EGDVELLPSDH_					0	0	0		nc|ENSG00000048028|Q96RU2-2|USP28;USP28|p.V940Gfs*26|1|0.33|ENSG00000048028|chr11:113803201-113803202|-/C|frameshift_variant;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28;nc|ENSG00000048028|Q96RU2-3|USP28;ENST00000545608.5_2_11:113688400-113704155:-|nuORF;ENST00000540438.5_1_11:113691037-113702685:-|nuORF	nc|ENSG00000048028|Q96RU2-2|USP28	nc|ENSG00000048028|Q96RU2-2|USP28	MULTI-MSMS	A375_MHC_IP_R2	2	606.181884765625	2	605.78295	1209.55135	-0.75239	-0.00045578	-0.60048	-0.00036376	-1.3529	-0.00081954	605.7826029196527	20.777	0.45705	21.387	21.109	21.566	0.61029					11	8	2	0	0	0	0.43152	1	6490	6490		36.506	19.393	1	1541100			10566	14463	7408	7473	10333	10333					-0.045046951867107055
EGDVELLPSDH	11	Unmodified	_EGDVELLPSDH_					0	0	0		nc|ENSG00000048028|Q96RU2-2|USP28;USP28|p.V940Gfs*26|1|0.33|ENSG00000048028|chr11:113803201-113803202|-/C|frameshift_variant;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28;nc|ENSG00000048028|Q96RU2-3|USP28;ENST00000545608.5_2_11:113688400-113704155:-|nuORF;ENST00000540438.5_1_11:113691037-113702685:-|nuORF	nc|ENSG00000048028|Q96RU2-2|USP28	nc|ENSG00000048028|Q96RU2-2|USP28	MULTI-SECPEP	A375_MHC_IP_R2	2	403.9192199707031	3	404.191059	1209.55135	-0.31543	-0.00012749	-0.21291	-8.6058E-05	-0.52834	-0.00021355	404.19085803739296	20.762	0.81073	21.373	21.008	21.819	0.61029					31	15	3	0	0	0	0.96429	1	6501	6501		20.871	13.394	1	2800200			10567	14463	7408	7473	10334	10334					-0.045046951867107055
EGDYCSCDGY	10	Unmodified	_EGDYCSCDGY_					0	0	0		nc|ENSG00000140479|P29122-5|PCSK6;nc|ENSG00000140479|P29122-4|PCSK6;nc|ENSG00000140479|P29122-2|PCSK6;nc|ENSG00000140479|P29122-8|PCSK6;ENSG00000140479|ENST00000611716|PCSK6;nc|ENSG00000140479|P29122-7|PCSK6;nc|ENSG00000140479|P29122-3|PCSK6;nc|ENSG00000140479|P29122-6|PCSK6	nc|ENSG00000140479|P29122-5|PCSK6	nc|ENSG00000140479|P29122-5|PCSK6	MSMS	A375_MHC_IP_R2	2	556.2188720703125	2	556.170789	1110.32703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.349	1	69.084	68.584	69.584	0.73511								0	0	0	0.15591	1	25901	25901		1.6526	0.85899	1				10568	5160	7409	7474	10335	10335					-0.2237246960385164
EGEEAEKEDDK	11	Unmodified	_EGEEAEKEDDK_					0	0	0			REV__ENST00000399515.2_1_2:190788858-190788939:+|nuORF	REV__ENST00000399515.2_1_2:190788858-190788939:+|nuORF	MSMS	A375_MHC_IP_R2	2	639.6856079101562	2	639.770236	1277.52592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.307	1	42.082	41.582	42.582	0.77451								0	0	0	0.15285	1	15322	15322		18.721	4.3158	1		+		10569	16965	7410	7475	10336	10336					-0.10174214499807022
EGEECDCE	8	Unmodified	_EGEECDCE_					0	0	0		ADAM29|p.G414E|1|0.18|ENSG00000168594|chr4:174976766-174976766|G/A|missense_variant	ADAM29|p.G414E|1|0.18|ENSG00000168594|chr4:174976766-174976766|G/A|missense_variant	ADAM29|p.G414E|1|0.18|ENSG00000168594|chr4:174976766-174976766|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	457.16302490234375	2	457.131133	912.247713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.88	1	100.88	100.38	101.38	0								0	0	0	0.16876	1	37081	37081		0.79363	0	1				10570	48	7411	7476	10337	10337					-0.21192116557995178
EGEGEGEKVKE	11	Unmodified	_EGEGEGEKVKE_					0	0	0			REV__ENST00000424408.6_1_6:112575345-112575621:-|nuORF	REV__ENST00000424408.6_1_6:112575345-112575621:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	397.9234619140625	3	397.522697	1189.54626	0.25851	0.00010277	0.85561	0.00034012	1.1141	0.00044289	397.5232540049237	22.546	0.60645	22.546	22.368	22.974	0					16	11	2	0	0	0	0.45155	1	6089	6089		23.016	0	1	2492100	+		10571	24626	7412	7477	10338	10338					-0.04092999049339596
EGEIPPPQDP	10	Unmodified	_EGEIPPPQDP_					0	0	0		ENSG00000154781|ENST00000383794|CCDC174;ENST00000463438.5_1_3:14693292-14703332:+|nuORF;ENST00000465759.1_1_3:14693292-14708492:+|nuORF	ENSG00000154781|ENST00000383794|CCDC174	ENSG00000154781|ENST00000383794|CCDC174	MULTI-SECPEP	A375_MHC_IP_R2	2	540.1552124023438	2	539.756204	1077.49785	-0.79528	-0.00042925	-0.99346	-0.00053623	-1.7887	-0.00096548	539.7556276674037	70.37	1.1687	71.104	70.284	71.453	0.73421					35	22	2	0	0	0	0.91556	1	26714	26714		3.2813	0	1	1665000			10572	6108	7413	7478	10339	10339					-0.03779447898568833
EGELLNCKDVC	11	Unmodified	_EGELLNCKDVC_					0	0	0			REV__ENSG00000146648|ENST00000275493|EGFR	REV__ENSG00000146648|ENST00000275493|EGFR	MULTI-MSMS	A375_MHC_IP_R1	1	408.5865783691406	3	408.186263	1221.53696	-0.11882	-4.8502E-05	0.34557	0.00014106	0.22674	9.2553E-05	408.1863744907583	20.206	0.25327	20.206	20.03	20.283	0					8	4	2	0	0	0	0.72585	1	5155	5155		12.856	1.3381	1	2388600	+		10573	19545	7414	7479	10340	10340					-0.06494806930868435
EGELLNCKDVC	11	Unmodified	_EGELLNCKDVC_					0	0	0			REV__ENSG00000146648|ENST00000275493|EGFR	REV__ENSG00000146648|ENST00000275493|EGFR	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	408.186263	1221.53696	-0.11882	-4.8502E-05	0.34557	0.00014106	0.22674	9.2553E-05	408.1863744907583	20.206	0.25327	20.206	20.03	20.283	0	0.19887	-0.00015681	NaN	12.856	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2388600	+		10574	19545	7414	7479							-0.06494806930868435
EGELLNCKDVC	11	Unmodified	_EGELLNCKDVC_					0	0	0			REV__ENSG00000146648|ENST00000275493|EGFR	REV__ENSG00000146648|ENST00000275493|EGFR	MULTI-MATCH	A375_MHC_IP_R2	2		3	408.186263	1221.53696	-0.26341	-0.00010752	0.69621	0.00028418	0.4328	0.00017666	408.18641863415803	19.205	0.3023	19.808	19.633	19.935	0.60308	-0.19887	0.00027258	NaN	12.856	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1625200	+		10575	19545	7414	7479							-0.06494806930868435
EGENEEPQCQ	10	Unmodified	_EGENEEPQCQ_					0	0	0		ENSG00000083168|ENST00000265713|KAT6A	ENSG00000083168|ENST00000265713|KAT6A	ENSG00000083168|ENST00000265713|KAT6A	MSMS	A375_MHC_IP_R1	1	388.2429504394531	3	388.148754	1161.42443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.152	1	18.152	17.652	18.652	0								0	0	0	0.15596	1	4312	4312		0.62683	0	1				10576	1772	7415	7480	10341	10341					-0.14982364403340398
EGENEEPQCQ	10	Unmodified	_EGENEEPQCQ_					0	0	0		ENSG00000083168|ENST00000265713|KAT6A	ENSG00000083168|ENST00000265713|KAT6A	ENSG00000083168|ENST00000265713|KAT6A	MSMS	A375_MHC_IP_R1	1	388.2423400878906	3	388.148754	1161.42443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.186	1	19.186	18.686	19.686	0								0	0	0	0.15596	1	4622	4622		0.62683	0	1				10577	1772	7415	7480	10342	10342					-0.14982364403340398
EGERGTWLYV	10	Unmodified	_EGERGTWLYV_					0	0	0			REV__ENST00000316491.13_1_16:31771030-31771174:+|nuORF	REV__ENST00000316491.13_1_16:31771030-31771174:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	403.59735107421875	3	403.868139	1208.58259	-0.23397	-9.4494E-05	-0.87975	-0.0003553	-1.1137	-0.0004498	404.202718374989	23.921	0.35791	24.551	24.435	24.792	0.63015					13	6	3	0	0	0	0.88918	1	7821	7821		7.9454	5.6626	1	2692100	+		10578	23538	7416	7481	10343	10343					-0.01336077361952448
EGERNTQAE	9	Unmodified	_EGERNTQAE_					0	0	0		ENST00000532885.5_1_11:64128013-64135652:+|nuORF;nc|ENSG00000162302|O75676-2|RPS6KA4;ENSG00000162302|ENST00000334205|RPS6KA4	ENST00000532885.5_1_11:64128013-64135652:+|nuORF;nc|ENSG00000162302|O75676-2|RPS6KA4	nc|ENSG00000162302|O75676-2|RPS6KA4	MULTI-SECPEP	A375_MHC_IP_R2	2	516.6619262695312	2	517.230884	1032.44722	-1.0614	-0.00054899	0.3743	0.0001936	-0.6871	-0.00035539	517.2318139715304	23.292	0.20187	23.922	23.828	24.029	0.63014					5	3	2	0	0	0	0.78348	1	7478	7478		1.8442	0	1	1053200			10579	6517;13190	7417	7482	10344	10344					-0.06770977223573027
EGESGGSMHT	10	Unmodified	_EGESGGSMHT_					0	0	0		nc|ENSG00000130830|Q00013-3|MPP1;ENSG00000130830|ENST00000369534|MPP1;ENST00000471821.1_1_X:154019969-154033702:-|nuORF;ENST00000475943.5_1_X:154013074-154033702:-|nuORF	nc|ENSG00000130830|Q00013-3|MPP1	nc|ENSG00000130830|Q00013-3|MPP1	MSMS	A375_MHC_IP_R1	1	496.1713562011719	2	496.192913	990.371274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.531	1	52.531	52.031	53.031	0								0	0	0	0.15435	1	18686	18686		6.7232	0.36906	1				10580	4289	7418	7483	10345	10345					-0.12429697395350559
EGEVIDLVLGP	11	Unmodified	_EGEVIDLVLGP_					0	0	0			REV__ENST00000593400.5_1_19:12788048-12788168:-|nuORF	REV__ENST00000593400.5_1_19:12788048-12788168:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	570.6732177734375	2	570.810979	1139.6074	-0.33122	-0.00018906	-0.07912	-4.5162E-05	-0.41034	-0.00023423	570.8107499683243	30.975	0.40636	31.694	31.517	31.923	0.71857					19	7	3	0	0	0	0.78118	1	10897	10897		15.248	0	1	7961200	+		10581	26457	7419	7484	10346	10346					0.04318557720762328
EGFNNFDPL	9	Unmodified	_EGFNNFDPL_					0	0	0		tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	MSMS	A375_MHC_IP_R2	2	526.7056884765625	2	526.737814	1051.46108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.581	1	52.333	51.833	52.833	0.75225								0	0	0	0.15468	1	19413	19413		13.906	0	1				10582	29814	7420	7485	10347	10347					-0.06259699724478196
EGFQMPLPSC	10	Unmodified	_EGFQMPLPSC_					0	0	0		ENST00000382361.7_1_7:5645159-5645399:+|nuORF	ENST00000382361.7_1_7:5645159-5645399:+|nuORF	ENST00000382361.7_1_7:5645159-5645399:+|nuORF	MSMS	A375_MHC_IP_R1	1	554.6771850585938	2	554.743728	1107.4729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.608	1	76.608	76.108	77.108	0								0	0	0	0.15207	1	27928	27928		13.906	2.2658	1				10583	11386	7421	7486	10348	10348					-0.07653542297134663
EGFSEYHQN	9	Unmodified	_EGFSEYHQN_					0	0	0			REV__nc|ENSG00000152092|O14525-3|ASTN1	REV__nc|ENSG00000152092|O14525-3|ASTN1	MULTI-MSMS	A375_MHC_IP_R2	2	556.12744140625	2	555.727978	1109.4414	-1.2259	-0.00068129	0.59602	0.00033123	-0.62992	-0.00035007	555.7281363930026	25.594	0.2539	26.254	26.144	26.398	0.65992					7	4	2	0	0	0	0.67332	1	8617	8617		9.3831	9.3831	1	2766900	+		10584	19790	7422	7487	10349	10349					-0.10894075735245679
EGFSEYHQN	9	Unmodified	_EGFSEYHQN_					0	0	0			REV__nc|ENSG00000152092|O14525-3|ASTN1	REV__nc|ENSG00000152092|O14525-3|ASTN1	MULTI-MATCH	A375_MHC_IP_R1	1		2	555.727978	1109.4414	-0.87714	-0.00048745	0.50032	0.00027804	-0.37682	-0.00020941	555.7279867793094	26.168	0.30463	26.168	26.017	26.322	0	-0.042793	-4.7493E-05	NaN	9.3831	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2061300	+		10585	19790	7422	7487							-0.10894075735245679
EGFSEYHQN	9	Unmodified	_EGFSEYHQN_					0	0	0			REV__nc|ENSG00000152092|O14525-3|ASTN1	REV__nc|ENSG00000152092|O14525-3|ASTN1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	555.727978	1109.4414	-1.2259	-0.00068129	0.59602	0.00033123	-0.62992	-0.00035007	555.7281363930026	25.594	0.2539	26.254	26.144	26.398	0.65992	0.042793	5.8878E-05	NaN	9.3831	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2766900	+		10586	19790	7422	7487							-0.10894075735245679
EGFVRKSDGF	10	Unmodified	_EGFVRKSDGF_					0	0	0			REV__ENSG00000184708|ENST00000330125|EIF4ENIF1	REV__ENSG00000184708|ENST00000330125|EIF4ENIF1	MULTI-SECPEP	A375_MHC_IP_R1	1	381.6121826171875	3	381.192734	1140.55637	0.29384	0.00011201	-0.67772	-0.00025834	-0.38389	-0.00014633	381.52652195958194	32.022	0.36016	32.022	31.819	32.179	0					11	6	2	0	0	0	0.91442	1	10301	10301		10.315	0.16466	1	2266700	+		10587	21835	7423	7488	10350	10350					-0.008283465334216089
EGFWYSKTCPF	11	Unmodified	_EGFWYSKTCPF_					0	0	0			REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	A375_MHC_IP_R1	1	683.7678833007812	2	682.802631	1363.59071	-0.56295	-0.00038438	-0.58864	-0.00040192	-1.1516	-0.00078631	682.8023760791473	97.799	0.40936	97.799	97.641	98.05	0					19	7	3	0	0	0	0.72949	1	35894	35894		9.3831	4.8543	1	2318100	+		10588	20541	7424	7489	10351	10351					-0.07654266436838952
EGFWYSKTCPF	11	Unmodified	_EGFWYSKTCPF_					0	0	0			REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	A375_MHC_IP_R1	1	683.201904296875	2	682.802631	1363.59071	-0.56295	-0.00038438	-0.58864	-0.00040192	-1.1516	-0.00078631	682.8023760791473	97.799	0.40936	97.799	97.641	98.05	0					19	7	3	0	0	0	0.94168	1	35959	35959		20.415	20.415	1	2318100	+		10589	20541	7424	7489	10352	10352					-0.07654266436838952
EGFWYSKTCPF	11	Unmodified	_EGFWYSKTCPF_					0	0	0			REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	682.802631	1363.59071	-0.85231	-0.00058196	-1.3865	-0.00094674	-2.2389	-0.0015287	682.8018727476318	97.05	0.35574	97.806	97.67	98.025	0.75587	0.0032614	-0.00062901	NaN	9.3831	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2101300	+		10590	20541	7424	7489							-0.07654266436838952
EGFYFKKCND	10	Unmodified	_EGFYFKKCND_					0	0	0		tr|U7SUL0|U7SUL0_FUSNUBacterialtranscriptionalactivatordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01209PE=4SV=1	tr|U7SUL0|U7SUL0_FUSNUBacterialtranscriptionalactivatordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01209PE=4SV=1	tr|U7SUL0|U7SUL0_FUSNUBacterialtranscriptionalactivatordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01209PE=4SV=1	MSMS	A375_MHC_IP_R2	2	625.6769409179688	2	625.779156	1249.54376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.958	1	26.618	26.118	27.118	0.65992								0	0	0	0.1502	1	8730	8730		17.443	3.0373	1				10591	29772	7425	7490	10353	10353					-0.07103125987987369
EGGGPSPQV	9	Unmodified	_EGGGPSPQV_					0	0	0			REV__ENST00000502773.5_1_4:157892054-157892213:-|nuORF	REV__ENST00000502773.5_1_4:157892054-157892213:-|nuORF	MSMS	A375_MHC_IP_R1	1	414.1789245605469	2	414.198325	826.382096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.295	1	87.295	86.795	87.795	0								0	0	0	0.15283	1	32028	32028		16.942	2.104	1		+		10592	25506	7426	7491	10354	10354					-0.0380392695875571
EGGGPSPQV	9	Unmodified	_EGGGPSPQV_					0	0	0			REV__ENST00000502773.5_1_4:157892054-157892213:-|nuORF	REV__ENST00000502773.5_1_4:157892054-157892213:-|nuORF	MSMS	A375_MHC_IP_R2	2	414.1786193847656	2	414.198325	826.382096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.216	1	86.949	86.449	87.449	0.733								0	0	0	0.15283	1	32787	32787		16.942	2.104	1		+		10593	25506	7426	7491	10355	10355					-0.0380392695875571
EGGKKKPV	8	Unmodified	_EGGKKKPV_					0	0	0		nc|ENSG00000124140|Q9H2X9|SLC12A5;ENSG00000124140|ENST00000243964|SLC12A5;ENST00000372315.4_1_20:44657854-44669254:+|nuORF	nc|ENSG00000124140|Q9H2X9|SLC12A5	nc|ENSG00000124140|Q9H2X9|SLC12A5	MULTI-SECPEP	A375_MHC_IP_R2	2	420.96270751953125	2	421.758352	841.502152	-0.40726	-0.00017176	0.43834	0.00018487	0.031082	1.3109E-05	421.7584000955063	54.182	0.40532	54.933	54.763	55.169	0.7508					14	7	3	0	0	0	0.972	1	20405	20405		8.5933	0	1	1292000			10594	3871	7427	7492	10356	10356					0.07506106105665822
EGGRPEDKLEF	11	Unmodified	_EGGRPEDKLEF_					0	0	0		ENSG00000065357|ENST00000331886|DGKA;nc|ENSG00000065357|P23743-3|DGKA;ENST00000551296.5_1_12:56330769-56334129:+|nuORF;ENST00000549097.5_1_12:56325880-56333318:+|nuORF;ENST00000547358.5_1_12:56325089-56334578:+|nuORF	ENSG00000065357|ENST00000331886|DGKA	ENSG00000065357|ENST00000331886|DGKA	MULTI-MSMS	A375_MHC_IP_R1	1	426.6106262207031	3	426.210453	1275.60953	0.076971	3.2806E-05	0.3725	0.00015876	0.44947	0.00019157	426.21061224744494	37.376	0.35748	37.376	37.198	37.556	0					10	6	2	0	0	0	0.72725	1	12627	12627		6.6599	3.0672	1	3323600			10595	1378	7428	7493	10357	10357					-0.017250135414315082
EGGRPEDKLEF	11	Unmodified	_EGGRPEDKLEF_					0	0	0		ENSG00000065357|ENST00000331886|DGKA;nc|ENSG00000065357|P23743-3|DGKA;ENST00000551296.5_1_12:56330769-56334129:+|nuORF;ENST00000549097.5_1_12:56325880-56333318:+|nuORF;ENST00000547358.5_1_12:56325089-56334578:+|nuORF	ENSG00000065357|ENST00000331886|DGKA	ENSG00000065357|ENST00000331886|DGKA	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	426.210453	1275.60953	0.076971	3.2806E-05	0.3725	0.00015876	0.44947	0.00019157	426.21061224744494	37.376	0.35748	37.376	37.198	37.556	0	0.01051	-4.9307E-05	NaN	6.6599	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3323600			10596	1378	7428	7493							-0.017250135414315082
EGGRRPRPC	9	Unmodified	_EGGRRPRPC_					0	0	0		ENST00000282908.9_1_4:5053388-5053625:+|nuORF	ENST00000282908.9_1_4:5053388-5053625:+|nuORF	ENST00000282908.9_1_4:5053388-5053625:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	514.6640014648438	2	514.264342	1026.51413	-0.6487	-0.0003336	-2.1421	-0.0011016	-2.7908	-0.0014352	514.2646924154533	80.837	0.45786	80.837	80.642	81.1	0					27	8	4	0	0	0	0.60101	1	29524	29524		14.838	3.198	1	4850500			10597	10434	7429	7494	10358	10358					0.0019339957721058454
EGHELFVRP	9	Unmodified	_EGHELFVRP_					0	0	0			REV__nc|ENSG00000160051|Q4KMZ1-2|IQCC	REV__nc|ENSG00000160051|Q4KMZ1-2|IQCC	MULTI-MSMS	A375_MHC_IP_R2	2	362.5930480957031	3	361.857574	1082.55089	-0.61632	-0.00022302	1.4635	0.00052957	0.84715	0.00030655	361.85763316277075	25.661	0.8131	26.321	26.094	26.907	0.65992					28	15	3	0	0	0	0.65721	1	8774	8774		7.1017	1.2336	1	5285300	+		10598	20142	7430	7495	10359	10359					0.012919746747684258
EGHLKCSV	8	Unmodified	_EGHLKCSV_					0	0	0			REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B	REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B	MULTI-SECPEP	A375_MHC_IP_R1	1	437.1188049316406	2	436.71837	871.422187	-0.38727	-0.00016913	0.92789	0.00040523	0.54062	0.0002361	436.7187535951591	90.971	0.55766	90.971	90.641	91.199	0					15	10	2	0	0	0	0.88903	1	33459	33459		24.021	0	1	1083200	+		10599	22126	7431	7496	10360	10360					-0.01866703559835514
EGHPGLGLW	9	Unmodified	_EGHPGLGLW_					0	0	0		ENST00000487702.1_1_3:184059912-184060866:+|nuORF	ENST00000487702.1_1_3:184059912-184060866:+|nuORF	ENST00000487702.1_1_3:184059912-184060866:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	483.6457824707031	2	483.245609	964.476666	-0.56038	-0.0002708	0.52457	0.0002535	-0.035812	-1.7306E-05	483.24594987688135	68.357	0.50758	68.357	68.159	68.666	0					13	9	2	0	0	0	0.62767	1	24813	24813		11.64	1.5664	1	1421600			10600	12600	7432	7497	10361	10361					-0.0069936841675826145
EGICTGGFWF	10	Unmodified	_EGICTGGFWF_					0	0	0		nc|ENSG00000171365|P51795-1|CLCN5;ENSG00000171365|ENST00000376091|CLCN5	nc|ENSG00000171365|P51795-1|CLCN5	nc|ENSG00000171365|P51795-1|CLCN5	MULTI-MSMS	A375_MHC_IP_R1	1	558.6998291015625	2	558.744585	1115.47462	-0.49757	-0.00027801	-0.21214	-0.00011853	-0.7097	-0.00039654	558.7444537698466	89.439	0.65971	89.439	89.12	89.78	0					20	12	2	0	0	0	0.55789	1	32905	32905		24.021	5.8742	1	1880500			10601	7597	7433	7498	10362	10362					-0.07850165216882488
EGIDTVWAY	9	Unmodified	_EGIDTVWAY_					0	0	0		nc|ENSG00000150756|Q6P4H8-2|ATPSCKMT;ENSG00000150756|ENST00000511437|ATPSCKMT	nc|ENSG00000150756|Q6P4H8-2|ATPSCKMT	nc|ENSG00000150756|Q6P4H8-2|ATPSCKMT	MSMS	A375_MHC_IP_R1	1	527.20263671875	2	527.248015	1052.48148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.209	1	39.209	38.709	39.709	0								0	0	0	0.12568	1	13378	13378		34.102	2.065	1				10602	5860	7434	7499	10363	10363					-0.042665290646709764
EGKGLWGA	8	Unmodified	_EGKGLWGA_					0	0	0		ENST00000484302.3_1_17:46673508-46675147:-|nuORF	ENST00000484302.3_1_17:46673508-46675147:-|nuORF	ENST00000484302.3_1_17:46673508-46675147:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	817.3167724609375	1	817.420279	816.413003	-0.79741	-0.00065182	-0.86136	-0.00070409	-1.6588	-0.0013559	817.4194660367666	125.32	0.40029	125.61	125.52	125.92	0.2951					10	7	2	0	0	0	0.94587	1	49058	49058		14.838	0	1	66817000			10603	12561	7435	7500	10364	10364					-0.0025472885386079724
EGKYAWSI	8	Unmodified	_EGKYAWSI_					0	0	0		nc|ENSG00000074603|Q6V1X1-2|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8;nc|ENSG00000074603|Q6V1X1-4|DPP8;nc|ENSG00000074603|Q6V1X1-5|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	MULTI-SECPEP	A375_MHC_IP_R2	2	476.6498718261719	2	477.239993	952.465432	-0.65206	-0.00031119	-0.16878	-8.0548E-05	-0.82084	-0.00039174	477.239974240467	62.441	0.5085	63.183	62.925	63.434	0.74263					17	9	3	0	0	0	0.91495	1	23634	23634		7.9102	7.9102	1	2291100			10604	1586	7436	7501	10365	10365					-0.01270190510899738
EGKYCDCCYC	10	Unmodified	_EGKYCDCCYC_					0	0	0		ENSG00000125386|ENST00000637812|FAM193A;nc|ENSG00000125386|P78312-4|FAM193A;nc|ENSG00000125386|P78312-2|FAM193A;nc|ENSG00000125386|P78312-5|FAM193A;nc|ENSG00000125386|P78312|FAM193A;nc|ENSG00000125386|P78312-6|FAM193A	ENSG00000125386|ENST00000637812|FAM193A	ENSG00000125386|ENST00000637812|FAM193A	MULTI-SECPEP	A375_MHC_IP_R1	1	396.647216796875	3	396.127251	1185.35992	-0.3592	-0.00014229	-2.5206	-0.00099848	-2.8798	-0.0011408	396.12666786662277	25.995	0.55684	25.995	25.816	26.373	0					12	10	2	0	0	0	0.94941	1	7756	7756		1.5923	0.63001	1	1234700			10605	3957	7437	7502	10366	10366					-0.22534302076996937
EGLEECYHP	9	Unmodified	_EGLEECYHP_					0	0	0		ZFPM2|p.G781E|1|0.26|ENSG00000169946|chr8:105802424-105802424|G/A|missense_variant	ZFPM2|p.G781E|1|0.26|ENSG00000169946|chr8:105802424-105802424|G/A|missense_variant	ZFPM2|p.G781E|1|0.26|ENSG00000169946|chr8:105802424-105802424|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	538.6632690429688	2	538.721307	1075.42806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.504	1	72.239	71.739	72.739	0.73421								0	0	0	0.15142	1	27127	27127		19.257	3.4098	1				10606	30201	7438	7503	10367	10367					-0.1066364983882977
EGLEWRRPLRR	11	Unmodified	_EGLEWRRPLRR_					0	0	0		ENST00000591473.1_1_19:36705638-36705767:-|nuORF	ENST00000591473.1_1_19:36705638-36705767:-|nuORF	ENST00000591473.1_1_19:36705638-36705767:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	490.3469543457031	3	489.947898	1466.82186	-0.6519	-0.0003194	-1.4241	-0.00069772	-2.076	-0.0010171	489.9473219224706	143.12	0.45352	143.12	142.84	143.29	0					11	8	2	0	0	0	1.0012	1	54943	54943		1.2148	0.76031	1	815050			10607	13802	7439	7504	10368	10368					0.10712542379883416
EGLEWRRPLRR	11	Unmodified	_EGLEWRRPLRR_					0	0	0		ENST00000591473.1_1_19:36705638-36705767:-|nuORF	ENST00000591473.1_1_19:36705638-36705767:-|nuORF	ENST00000591473.1_1_19:36705638-36705767:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	489.947898	1466.82186	-0.36106	-0.0001769	-1.0009	-0.00049037	-1.3619	-0.00066727	489.9475911037109	143.16	0.45312	143.19	142.89	143.34	0.030731	0.035246	0.00031229	NaN	1.2148	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	607380			10608	13802	7439	7504							0.10712542379883416
EGLFQFCEA	9	Unmodified	_EGLFQFCEA_					0	0	0		ENST00000604849.1_2_X:53171236-53171878:+|nuORF	ENST00000604849.1_2_X:53171236-53171878:+|nuORF	ENST00000604849.1_2_X:53171236-53171878:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	522.6907348632812	2	522.228768	1042.44298	-0.67797	-0.00035405	0.16252	8.4874E-05	-0.51545	-0.00026918	522.7296925833743	66.249	0.35503	66.249	66.022	66.377	0					9	6	2	0	0	0	0.49205	1	23910	23910		34.402	13.948	1	922530			10609	13905	7440	7505	10369	10369					-0.07654157970819142
EGLGHSLGSV	10	Unmodified	_EGLGHSLGSV_					0	0	0		ENST00000337768.9_1_2:27885122-27886250:-|nuORF	ENST00000337768.9_1_2:27885122-27886250:-|nuORF	ENST00000337768.9_1_2:27885122-27886250:-|nuORF	MSMS	A375_MHC_IP_R2	2	478.1592712402344	2	478.245806	954.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.869	1	33.606	33.106	34.106	0.73692								0	0	0	0.15353	1	11734	11734		9.3831	1.2276	1				10610	10833	7441	7506	10370	10370					-0.001999934875584586
EGLLFPALSPF	11	Unmodified	_EGLLFPALSPF_					0	0	0		ENST00000522746.5_1_8:130908993-130915567:-|nuORF	ENST00000522746.5_1_8:130908993-130915567:-|nuORF	ENST00000522746.5_1_8:130908993-130915567:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	596.226318359375	2	595.826432	1189.63831	-0.36084	-0.000215	-0.52428	-0.00031238	-0.88512	-0.00052738	595.8261258872247	104.39	0.66099	104.39	104.13	104.79	0					18	12	2	0	0	0	0.88813	1	38383	38383		24.991	7.5483	1	1397700			10611	13030	7442	7507	10371	10371					0.05107755825633831
EGLLFPALSPF	11	Unmodified	_EGLLFPALSPF_					0	0	0		ENST00000522746.5_1_8:130908993-130915567:-|nuORF	ENST00000522746.5_1_8:130908993-130915567:-|nuORF	ENST00000522746.5_1_8:130908993-130915567:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	595.826432	1189.63831	-0.53379	-0.00031805	0.98902	0.00058929	0.45523	0.00027124	595.8262852142299	103.72	0.55827	104.48	104.09	104.65	0.76428	0.044416	0.0012643	NaN	24.991	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1321600			10612	13030	7442	7507							0.05107755825633831
EGLPSHRTA	9	Unmodified	_EGLPSHRTA_					0	0	0		ENSG00000158553|ENST00000444565|POM121L2	ENSG00000158553|ENST00000444565|POM121L2	ENSG00000158553|ENST00000444565|POM121L2	MULTI-SECPEP	A375_MHC_IP_R1	1	483.6740417480469	2	484.251423	966.488293	-0.25812	-0.00012499	0.23639	0.00011447	-0.021723	-1.0519E-05	484.25136140613176	57.32	0.61272	57.32	56.905	57.518	0					17	11	2	0	0	0	0.38578	1	20475	20475		27.629	6.0918	1	2390200			10613	6313	7443	7508	10372	10372					0.003708286065716493
EGLSQKFIYL	10	Unmodified	_EGLSQKFIYL_					0	0	0		ENSG00000111670|ENST00000299314|GNPTAB;nc|ENSG00000111670|Q3T906-2|GNPTAB	ENSG00000111670|ENST00000299314|GNPTAB	ENSG00000111670|ENST00000299314|GNPTAB	MULTI-MSMS	A375_MHC_IP_R1	1	599.7306518554688	2	599.329339	1196.64412	-0.26118	-0.00015653	0.60337	0.00036162	0.34219	0.00020508	599.3295598800947	71.185	0.30773	71.185	71.005	71.313	0					9	5	2	0	0	0	0.56097	1	25870	25870		23.79	4.4278	1	1987200			10614	3012	7444	7509	10373	10373					0.053668543373532884
EGLTLGLHGQ	10	Unmodified	_EGLTLGLHGQ_					0	0	0		ENST00000456581.1_2_10:131902486-131909070:-|nuORF	ENST00000456581.1_2_10:131902486-131909070:-|nuORF	ENST00000456581.1_2_10:131902486-131909070:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	513.1753540039062	2	512.774731	1023.53491	-1.0199	-0.00052299	0.82469	0.00042288	-0.19523	-0.00010011	512.7750953899415	18.853	0.16035	19.456	19.423	19.583	0.60308					11	4	4	0	0	0	0.92957	1	5639	5639		1.3295	0	1	106670000			10615	12136	7445	7510	10374	10374					0.02408268437852712
EGLWPELFSY	10	Unmodified	_EGLWPELFSY_					0	0	0			REV__ENST00000608168.1_1_19:16003249-16008861:-|nuORF	REV__ENST00000608168.1_1_19:16003249-16008861:-|nuORF	MSMS	A375_MHC_IP_R2	2	620.7465209960938	2	620.797872	1239.58119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.53	1	29.216	28.716	29.716	0.68656								0	0	0	0.15353	1	9860	9860		9.3831	0	1		+		10616	26558	7446	7511	10375	10375					-0.02901711450726907
EGMQFCCCC	9	Unmodified	_EGMQFCCCC_					0	0	0			REV__ENST00000462279.5_1_5:60188520-60189039:-|nuORF	REV__ENST00000462279.5_1_5:60188520-60189039:-|nuORF	MSMS	A375_MHC_IP_R1	1	512.1029663085938	2	512.146694	1022.27884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.054	1	53.054	52.554	53.554	0								0	0	0	0.15486	1	18898	18898		2.0598	1.2661	1		+		10617	24987	7447	7512	10376	10376					-0.2314128132076121
EGMQFCCCC	9	Unmodified	_EGMQFCCCC_					0	0	0			REV__ENST00000462279.5_1_5:60188520-60189039:-|nuORF	REV__ENST00000462279.5_1_5:60188520-60189039:-|nuORF	MSMS	A375_MHC_IP_R2	2	512.1574096679688	2	512.146694	1022.27884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.712	1	45.481	44.981	45.981	0.7691								0	0	0	0.15486	1	16695	16695		2.0598	0	1		+		10618	24987	7447	7512	10377	10377					-0.2314128132076121
EGNDLVLYYE	10	Unmodified	_EGNDLVLYYE_					0	0	0			REV__nc|ENSG00000042980|Q9UKQ2-2|ADAM28	REV__nc|ENSG00000042980|Q9UKQ2-2|ADAM28	MULTI-MSMS	A375_MHC_IP_R1	1	608.714599609375	2	607.782418	1213.55028	-0.29773	-0.00018095	0.55277	0.00033596	0.25504	0.00015501	607.7816977492895	79.726	1.531	79.726	79.061	80.592	0					59	29	4	0	0	0	0.70479	1	29091	29091		10.151	1.4052	1	3691200	+		10619	16349	7448	7513	10378	10378					-0.04794909555607774
EGNHLHRY	8	Unmodified	_EGNHLHRY_					0	0	0		ENSG00000140943|ENST00000343411|MBTPS1	ENSG00000140943|ENST00000343411|MBTPS1	ENSG00000140943|ENST00000343411|MBTPS1	MULTI-MSMS	A375_MHC_IP_R1	1	513.6484375	2	513.249215	1024.48388	-0.58382	-0.00029964	0.21338	0.00010952	-0.37043	-0.00019012	513.2491592390777	87.205	1.0172	87.205	86.781	87.798	0					36	19	3	0	0	0	0.51581	1	31946	31946		48.346	48.346	1	3165100			10620	5194	7449	7514	10379	10379					-0.027386358163312252
EGNHLHRY	8	Unmodified	_EGNHLHRY_					0	0	0		ENSG00000140943|ENST00000343411|MBTPS1	ENSG00000140943|ENST00000343411|MBTPS1	ENSG00000140943|ENST00000343411|MBTPS1	MULTI-SECPEP	A375_MHC_IP_R2	2	513.6488647460938	2	513.249215	1024.48388	-0.61452	-0.0003154	0.40378	0.00020724	-0.21073	-0.00010816	513.2493970228921	86.494	0.96693	87.227	86.845	87.812	0.733					37	18	3	0	0	0	0.86263	1	32847	32847		34.102	34.102	1	2968800			10621	5194	7449	7514	10380	10380					-0.027386358163312252
EGNPYRRIW	9	Unmodified	_EGNPYRRIW_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-SECPEP	A375_MHC_IP_R2	2	397.2997131347656	3	397.540357	1189.59924	-0.14696	-5.8424E-05	-0.97335	-0.00038694	-1.1203	-0.00044537	397.53996278890554	32.655	0.30511	33.392	33.213	33.518	0.73692					14	5	4	0	0	0	0.74875	1	11607	11607		10.8	0	1	5326600			10622	2998	7450	7515	10381	10381					0.012024683146591997
EGNVEEDFY	9	Unmodified	_EGNVEEDFY_					0	0	0		ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	MULTI-MSMS	A375_MHC_IP_R1	1	551.2083129882812	2	551.222194	1100.42983	-0.49255	-0.00027151	-1.5952	-0.00087929	-2.0877	-0.0011508	551.2193894541394	73.213	1.6726	73.213	71.917	73.589	0					50	32	3	0	0	0	0.41409	1	26561	26561		24.021	2.2739	1	3368100			10623	6943	7451	7516	10382	10382					-0.11636317549209707
EGNVRVLVV	9	Unmodified	_EGNVRVLVV_					0	0	0			REV__ENST00000594624.6_1_19:42901368-43155291:+|nuORF	REV__ENST00000594624.6_1_19:42901368-43155291:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	492.4775085449219	2	492.795466	983.57638	-0.31049	-0.00015301	0.027188	1.3398E-05	-0.2833	-0.00013961	492.79517065590363	40.761	0.25253	40.761	40.66	40.913	0					6	4	2	0	0	0	0.67483	1	14001	14001		6.2058	2.2614	1	664570	+		10624	26462	7452	7517	10383	10383					0.08393449197183145
EGPAPVPFDGR	11	Unmodified	_EGPAPVPFDGR_					0	0	0			REV__ENST00000466482.5_1_3:98451275-98491689:+|nuORF	REV__ENST00000466482.5_1_3:98451275-98491689:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	381.9648132324219	3	381.192734	1140.55637	0.40271	0.00015351	0.19233	7.3315E-05	0.59504	0.00022683	381.1927155473246	34.994	0.66135	34.994	34.708	35.369	0					22	12	3	0	0	0	0.72649	1	11543	11543		6.6235	2.5068	1	12056000	+		10625	25038	7453	7518	10384	10384					-0.008283465334216089
EGPCGDSFRH	10	Unmodified	_EGPCGDSFRH_					0	0	0		ENST00000215917.11_2_22:26884007-26884082:+|nuORF	ENST00000215917.11_2_22:26884007-26884082:+|nuORF	ENST00000215917.11_2_22:26884007-26884082:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	369.2220764160156	3	368.822424	1103.44544	0.061452	2.2665E-05	-1.1672	-0.0004305	-1.1058	-0.00040784	368.8221551392978	65.729	0.5593	66.467	66.121	66.68	0.73812					17	10	2	0	0	0	0.94516	1	24951	24951		3.5871	2.5156	1	1311600			10626	10087	7454	7519	10385	10385					-0.10214309513162334
EGPPRLAI	8	Unmodified	_EGPPRLAI_					0	0	0		ENSG00000089693|ENST00000203630|MLF2	ENSG00000089693|ENST00000203630|MLF2	ENSG00000089693|ENST00000203630|MLF2	MULTI-SECPEP	A375_MHC_IP_R2	2	427.1502685546875	2	426.750527	851.486502	-0.42815	-0.00018271	-0.1446	-6.1709E-05	-0.57275	-0.00024442	426.75040845567395	56.173	0.61285	56.923	56.591	57.203	0.75015					20	11	2	0	0	0	0.60242	1	21204	21204		46.021	6.0636	1	4792500			10627	1933	7455	7520	10386	10386					0.054818195886127796
EGPRRVSGGL	10	Unmodified	_EGPRRVSGGL_					0	0	0			REV__ENST00000379162.8_1_X:24483472-24512868:+|nuORF	REV__ENST00000379162.8_1_X:24483472-24512868:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	514.6739501953125	2	514.285797	1026.55704	-0.791	-0.0004068	3.444	0.0017712	2.653	0.0013644	514.2876954790883	27.881	0.30395	28.56	28.351	28.655	0.67857					9	5	2	0	0	0	0.77698	1	9536	9536		17.443	4.4002	1	3231400	+		10628	24193	7456	7521	10387	10387					0.0448249290629974
EGPSHCQSL	9	Unmodified	_EGPSHCQSL_					0	0	0		ENST00000483962.1_1_2:241990766-241991612:+|nuORF	ENST00000483962.1_1_2:241990766-241991612:+|nuORF	ENST00000483962.1_1_2:241990766-241991612:+|nuORF	MSMS	A375_MHC_IP_R1	1	479.1739196777344	2	479.208366	956.40218	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.299	1	34.299	33.799	34.799	0								0	0	0	0.15486	1	11291	11291		10.824	1.4765	1				10629	12551	7457	7522	10388	10388					-0.07776499290446282
EGQLIQRFT	9	Unmodified	_EGQLIQRFT_					0	0	0			REV__ENSG00000166888|ENST00000300134|STAT6	REV__ENSG00000166888|ENST00000300134|STAT6	MULTI-SECPEP	A375_MHC_IP_R2	2	364.92315673828125	3	364.532979	1090.57711	-0.032691	-1.1917E-05	-0.040145	-1.4634E-05	-0.072837	-2.6551E-05	364.8675132820345	41.781	0.3082	42.555	42.35	42.659	0.77451					7	5	2	0	0	0	0.63327	1	15452	15452		8.9762	0	1	477450	+		10630	20713	7458	7523	10389	10389					0.03544243846226891
EGRKVSELF	9	Unmodified	_EGRKVSELF_					0	0	0			REV__ENSG00000215114|ENST00000399598|UBXN2B	REV__ENSG00000215114|ENST00000399598|UBXN2B	MULTI-SECPEP	A375_MHC_IP_R2	2	533.190185546875	2	532.790381	1063.56621	-0.77073	-0.00041064	1.1651	0.00062075	0.39436	0.00021011	532.7902003053979	74.572	0.56084	75.31	75.009	75.57	0.73752					16	8	3	0	0	0	0.71341	1	28341	28341		18.146	0	1	1858400	+		10631	22670	7459	7524	10390	10390					0.036968414719467546
EGRNDDSHY	9	Unmodified	_EGRNDDSHY_					0	0	0		ENSG00000154415|ENST00000284601|PPP1R3A	ENSG00000154415|ENST00000284601|PPP1R3A	ENSG00000154415|ENST00000284601|PPP1R3A	MSMS	A375_MHC_IP_R1	1	546.6808471679688	2	546.720684	1091.42681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.917	1	32.917	32.417	33.417	0								0	0	0	0.15486	1	10683	10683		7.2892	0.93513	1				10632	6085	7460	7525	10391	10391					-0.11524147883369551
EGRRRRRRRRP	11	Unmodified	_EGRRRRRRRRP_					0	0	0			REV__ENST00000222747.7_1_7:120497939-120498116:-|nuORF	REV__ENST00000222747.7_1_7:120497939-120498116:-|nuORF	MSMS	A375_MHC_IP_R1	1	775.9779052734375	2	775.975413	1549.93627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.277	1	82.277	81.777	82.777	0								0	0	0	0.16354	1	30086	30086		0.30703	0	1		+		10633	23055	7461	7526	10392	10392					0.18330289705181713
EGRRRRRRRSS	11	Unmodified	_EGRRRRRRRSS_					0	0	0		ENST00000392701.7_1_2:166650587-166650761:-|nuORF	ENST00000392701.7_1_2:166650587-166650761:-|nuORF	ENST00000392701.7_1_2:166650587-166650761:-|nuORF	MSMS	A375_MHC_IP_R2	2	736.8318481445312	2	736.430504	1470.84646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.26	1	108.02	107.52	108.52	0.75436								0	0	0	0.16316	1	40525	40525		2.2828	0.95324	1				10634	11427	7462	7527	10393	10393					0.12986615305976557
EGRRVGPV	8	Unmodified	_EGRRVGPV_					0	0	0		nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB;TNXB|p.H2483Y|1|0.2|ENSG00000168477|chr6:32061442-32061442|G/A|missense_variant	nc|ENSG00000168477|P22105-1|TNXB	nc|ENSG00000168477|P22105-1|TNXB	MULTI-MSMS	A375_MHC_IP_R1	1	435.6512145996094	2	435.251226	868.487899	-0.041176	-1.7922E-05	0.2438	0.00010612	0.20263	8.8194E-05	435.2512280958006	104.22	6.8161	104.22	102.61	109.42	0					311	133	3	0	0	0	0.77741	1	39254	39254		4.3292	4.3292	1	16984000			10635	7306	7463	7528	10394	10394					0.04839453677379879
EGRSRFVTL	9	Unmodified	_EGRSRFVTL_					0	0	0			REV__ENST00000381298.6_1_5:55290715-55290820:-|nuORF	REV__ENST00000381298.6_1_5:55290715-55290820:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	532.67431640625	2	532.795998	1063.57744	-0.86204	-0.00045929	0.046464	2.4756E-05	-0.81558	-0.00043454	532.7960144217052	40.65	0.509	41.425	41.183	41.692	0.77451					21	9	4	0	0	0	0.63327	1	15033	15033		13.042	0	1	4322300	+		10636	24233	7464	7529	10395	10395					0.048196635660815446
EGRVPTKIY	9	Unmodified	_EGRVPTKIY_					0	0	0			REV__ENSG00000181588|ENST00000402693|MEX3D	REV__ENSG00000181588|ENST00000402693|MEX3D	MULTI-SECPEP	A375_MHC_IP_R1	1	355.5794372558594	3	354.869591	1061.58694	-0.2086	-7.4027E-05	1.4272	0.00050646	1.2186	0.00043243	354.86975717109186	39.933	0.40602	39.933	39.694	40.1	0					14	7	3	0	0	0	0.78348	1	13601	13601		2.4985	2.4985	1	1512500	+		10637	21658	7465	7530	10396	10396					0.058614318515992636
EGSAGSSDEKP	11	Unmodified	_EGSAGSSDEKP_					0	0	0			REV__nc|ENSG00000181381|Q5H9U9-2|DDX60L	REV__nc|ENSG00000181381|Q5H9U9-2|DDX60L	MULTI-SECPEP	A375_MHC_IP_R2	2	531.6405639648438	2	532.23055	1062.44655	-0.68889	-0.00036665	-2.5284	-0.0013457	-3.2173	-0.0017123	532.2298948688704	76.818	0.35352	77.56	77.353	77.707	0.742					9	6	2	0	0	0	0.9754	1	29217	29217		8.1555	1.9497	1	636850	+		10638	15981	7466	7531	10397	10397					-0.0821781666327297
EGSCHMCEE	9	Unmodified	_EGSCHMCEE_					0	0	0			REV__ENSG00000122194|ENST00000308192|PLG	REV__ENSG00000122194|ENST00000308192|PLG	MSMS	A375_MHC_IP_R1	1	512.665771484375	2	512.662077	1023.3096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.761	1	82.761	82.261	83.261	0								0	0	0	0.15486	1	30271	30271		4.3292	3.5356	1		+		10639	18193	7467	7532	10398	10398					-0.20112088410496654
EGSCKPSVCFY	11	Unmodified	_EGSCKPSVCFY_					0	0	0			REV__ENST00000529585.5_1_10:135192804-135202566:+|nuORF	REV__ENST00000529585.5_1_10:135192804-135202566:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	610.6918334960938	2	610.259742	1218.50493	-0.79431	-0.00048474	0.49461	0.00030184	-0.2997	-0.0001829	610.2602024015966	60.236	0.66239	60.981	60.651	61.314	0.74503					12	12	2	0	0	0	0.84606	1	22686	22686		21.537	1.1224	1	1124400	+		10640	25825	7468	7533	10399	10399					-0.09558174614016934
EGSEQCYLNLW	11	Unmodified	_EGSEQCYLNLW_					0	0	0		ENST00000397747.4_1_9:5557645-5569982:+|nuORF	ENST00000397747.4_1_9:5557645-5569982:+|nuORF	ENST00000397747.4_1_9:5557645-5569982:+|nuORF	MSMS	A375_MHC_IP_R1	1	671.2816162109375	2	671.292627	1340.5707	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.8	1	103.8	103.3	104.3	0								0	0	0	0.16191	1	38119	38119		8.7454	2.5396	1				10641	11510	7469	7534	10400	10400					-0.08596062167453056
EGSFDNRFF	9	Unmodified	_EGSFDNRFF_					0	0	0			REV__ENSG00000106546|ENST00000242057|AHR	REV__ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	A375_MHC_IP_R1	1	560.2144775390625	2	559.748713	1117.48287	-0.19439	-0.00010881	0.48084	0.00026915	0.28644	0.00016034	559.7488561068353	49.646	1.1704	49.646	49.033	50.204	0					45	22	3	0	0	0	0.61998	1	17365	17365		13.906	0.39817	1	6442700	+		10642	17455	7470	7535	10401	10401					-0.07116894975911237
EGSHVQEMHNM	11	Unmodified	_EGSHVQEMHNM_					0	0	0			REV__ENSG00000198795|ENST00000361524|ZNF521	REV__ENSG00000198795|ENST00000361524|ZNF521	MSMS	A375_MHC_IP_R2	2	649.699951171875	2	649.766254	1297.51795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.957	1	21.567	21.067	22.067	0.61029								0	0	0	0.16302	1	6563	6563		2.9952	0	1		+		10643	22421	7471	7536	10402	10402					-0.11890343501909229
EGSIREPAMY	10	Unmodified	_EGSIREPAMY_					0	0	0			REV__nc|ENSG00000137764|Q13163-4|MAP2K5	REV__nc|ENSG00000137764|Q13163-4|MAP2K5	MULTI-MSMS	A375_MHC_IP_R2	2	576.722412109375	2	576.771331	1151.52811	-0.17829	-0.00010283	-1.8786	-0.0010835	-2.0568	-0.0011863	576.770135000637	67.268	0.45636	68.004	67.698	68.155	0.73631					13	8	2	0	0	0	0.66308	1	25503	25503		16.149	4.5088	1	1795600	+		10644	19029	7472	7537	10403	10403					-0.04159412505009641
EGSLHEPG	8	Unmodified	_EGSLHEPG_					0	0	0		ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	MULTI-SECPEP	A375_MHC_IP_R1	1	825.7664184570312	1	825.373723	824.366446	-0.70601	-0.00058272	-2.518	-0.0020783	-3.224	-0.002661	825.370951199327	139.09	0.35133	139.09	138.91	139.27	0					10	6	2	0	0	0	0.86765	1	53472	53472		32.117	6.7177	1	1337700			10645	2572	7473	7538	10404	10404					-0.0527621347580407
EGSLHEPG	8	Unmodified	_EGSLHEPG_					0	0	0		ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	MULTI-MATCH	A375_MHC_IP_R2	2		1	825.373723	824.366446	-0.60589	-0.00050008	-2.5109	-0.0020724	-3.1168	-0.0025725	825.3715822837777	139.1	0.29971	139.16	139.05	139.35	0.059906	0.034981	6.7728E-07	NaN	32.117	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1069700			10646	2572	7473	7538							-0.0527621347580407
EGSMAERGAY	10	Unmodified	_EGSMAERGAY_					0	0	0		TAF2|p.H176Y|1|0.2|ENSG00000064313|chr8:119803912-119803912|G/A|missense_variant	TAF2|p.H176Y|1|0.2|ENSG00000064313|chr8:119803912-119803912|G/A|missense_variant	TAF2|p.H176Y|1|0.2|ENSG00000064313|chr8:119803912-119803912|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	535.6526489257812	2	535.732206	1069.44986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.64	1	24.64	24.14	25.14	0								0	0	0	0.15353	1	7043	7043		9.3831	4.0862	1				10647	29291	7474	7539	10405	10405					-0.08208845090257455
EGSPGDPD	8	Unmodified	_EGSPGDPD_					0	0	0		nc|ENSG00000060491|Q9NZT2-2|OGFR;ENSG00000060491|ENST00000290291|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	MSMS	A375_MHC_IP_R2	2	387.12127685546875	2	387.15104	772.287527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.165	1	71.9	71.4	72.4	0.73421								0	0	0	0.16876	1	26990	26990		2.5775	0	1				10648	1310	7475	7540	10406	10406					-0.10772485500763196
EGSPQRALSRM	11	Unmodified	_EGSPQRALSRM_					0	0	0		nc|ENSG00000185252|Q16587-5|ZNF74;ENST00000493734.5_1_22:20749431-20759943:+|nuORF	nc|ENSG00000185252|Q16587-5|ZNF74	nc|ENSG00000185252|Q16587-5|ZNF74	MULTI-MSMS	A375_MHC_IP_R2	2	411.62054443359375	3	411.211911	1230.6139	0.13193	5.4252E-05	-0.11621	-4.7788E-05	0.01572	6.4641E-06	411.2118828336108	44.142	0.55686	44.911	44.682	45.239	0.76909					23	10	4	0	0	0	0.73135	1	16531	16531		3.8459	0	1	6491300			10649	12684	7476	7541	10407	10407					0.007821724004770658
EGSRAFTQW	9	Unmodified	_EGSRAFTQW_					0	0	0		nc|ENSG00000100105|Q9HBE1-4|PATZ1;ENST00000465287.1_1_22:31737393-31739122:-|nuORF	nc|ENSG00000100105|Q9HBE1-4|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	MULTI-SECPEP	A375_MHC_IP_R1	1	541.65673828125	2	541.256705	1080.49886	-0.78669	-0.0004258	-0.20095	-0.00010876	-0.98764	-0.00053457	541.2563987676693	39.567	0.50513	39.567	39.391	39.896	0					13	9	2	0	0	0	0.73363	1	13545	13545		10.824	0	1	4325700			10650	14505	7477	7542	10408	10408					-0.03817188739003541
EGSRAFTQW	9	Unmodified	_EGSRAFTQW_					0	0	0		nc|ENSG00000100105|Q9HBE1-4|PATZ1;ENST00000465287.1_1_22:31737393-31739122:-|nuORF	nc|ENSG00000100105|Q9HBE1-4|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	MULTI-MATCH	A375_MHC_IP_R2	2		2	541.256705	1080.49886	-1.11	-0.0006008	-0.34091	-0.00018452	-1.4509	-0.00078531	541.2563412701986	38.808	0.51258	39.582	39.351	39.863	0.77451	0.0074477	-4.9389E-05	NaN	10.824	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3452200			10651	14505	7477	7542							-0.03817188739003541
EGSTLLSFN	9	Unmodified	_EGSTLLSFN_					0	0	0			REV__IL10RA|p.G199E|1|0.5|ENSG00000110324|chr11:117994057-117994057|G/A|missense_variant	REV__IL10RA|p.G199E|1|0.5|ENSG00000110324|chr11:117994057-117994057|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	484.1661376953125	2	484.24019	966.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.068	1	32.068	31.568	32.568	0								0	0	0	0.14631	1	10327	10327		27.629	3.6082	1		+		10652	17625	7478	7543	10409	10409					-0.018748155817092993
EGSTTFRERY	10	Unmodified	_EGSTTFRERY_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	A375_MHC_IP_R1	1	623.7420043945312	2	623.296559	1244.57856	0.020905	1.303E-05	3.6603	0.0022815	3.6812	0.0022945	623.298127585522	45.064	0.40665	45.064	44.827	45.234	0					13	7	3	0	0	0	0.59108	1	15727	15727		21.537	1.0834	1	2298400	+		10653	16376	7479	7544	10410	10410					-0.03394166855673575
EGSYLDISDWL	11	Unmodified	_EGSYLDISDWL_					0	0	0		nc|ENSG00000148219|O75129-2|ASTN2;nc|ENSG00000148219|O75129-3|ASTN2;ENSG00000148219|ENST00000313400|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	MULTI-SECPEP	A375_MHC_IP_R2	2	649.699951171875	2	649.300975	1296.5874	-1.0365	-0.00067302	-0.17655	-0.00011463	-1.2131	-0.00078766	649.3007579948804	20.931	0.45566	21.541	21.312	21.768	0.61029					15	8	3	0	0	0	0.98748	1	6563	6563		8.7454	0.58988	1	1954100			10654	5725	7480	7545	10411	10411					-0.049032380098424255
EGTDPICDL	9	Unmodified	_EGTDPICDL_					0	0	0			REV__IMPG1|p.R116C|3|0.29|ENSG00000112706|chr6:76034743-76034743|G/A|missense_variant	REV__IMPG1|p.R116C|3|0.29|ENSG00000112706|chr6:76034743-76034743|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	481.6729431152344	2	481.710408	961.406262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.914	1	72.914	72.414	73.414	0								0	0	0	0.15283	1	26537	26537		16.942	1.1741	1		+		10655	26792	7481	7546	10412	10412					-0.07598454587423475
EGTLPYPIF	9	Unmodified	_EGTLPYPIF_					0	0	0		ENST00000599063.5_1_19:48601366-48609786:-|nuORF;nc|ENSG00000105499|Q9UP65-2|PLA2G4C;ENSG00000105499|ENST00000599921|PLA2G4C;nc|ENSG00000105499|Q9UP65-3|PLA2G4C;ENST00000598457.5_1_19:48593588-48602975:-|nuORF	ENST00000599063.5_1_19:48601366-48609786:-|nuORF	ENST00000599063.5_1_19:48601366-48609786:-|nuORF	MSMS	A375_MHC_IP_R1	1	518.6893310546875	2	518.771126	1035.5277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.065	1	54.065	53.565	54.565	0								0	0	0	0.15486	1	19289	19289		13.508	1.2672	1				10656	2612	7482	7547	10413	10413					0.011355358373975832
EGTTGVCFPF	10	Unmodified	_EGTTGVCFPF_					0	0	0		ENST00000373279.5_1_10:71392915-71393320:+|nuORF	ENST00000373279.5_1_10:71392915-71393320:+|nuORF	ENST00000373279.5_1_10:71392915-71393320:+|nuORF	MSMS	A375_MHC_IP_R1	1	529.1953125	2	529.236593	1056.45863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.357	1	33.357	32.857	33.857	0								0	0	0	0.15158	1	10881	10881		14.838	0.93222	1				10657	11227	7483	7548	10414	10414					-0.06733871453798201
EGTTTEISY	9	Unmodified	_EGTTTEISY_					0	0	0		nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MULTI-SECPEP	A375_MHC_IP_R1	1	999.897705078125	1	1000.44695	999.439671	0.15505	0.00015512	-0.41183	-0.00041201	-0.25678	-0.00025689	1000.446364880323	58.964	0.6103	58.964	58.685	59.295	0					27	11	3	0	0	0	0.58271	1	21324	21324		20.454	13.73	1	6578500			10658	1630	7484	7549	10415	10415					-0.06007129543854717
EGTTTEISY	9	Unmodified	_EGTTTEISY_					0	0	0		nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MULTI-MATCH	A375_MHC_IP_R2	2		1	1000.44695	999.439671	-0.29593	-0.00029607	-0.2645	-0.00026462	-0.56044	-0.00056069	1000.4465133676997	58.36	0.71233	59.109	58.829	59.542	0.74894	0.072504	6.5817E-05	NaN	20.454	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7256700			10659	1630	7484	7549							-0.06007129543854717
EGTWRRIPWVT	11	Unmodified	_EGTWRRIPWVT_					0	0	0		ENST00000520912.1_1_5:179296475-179297369:-|nuORF	ENST00000520912.1_1_5:179296475-179297369:-|nuORF	ENST00000520912.1_1_5:179296475-179297369:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	467.985107421875	3	467.585966	1399.73607	-0.66585	-0.00031134	-1.1327	-0.00052964	-1.7986	-0.00084098	467.5854242063823	48.544	0.60905	49.301	49.03	49.639	0.75737					28	11	3	0	0	0	0.73239	1	18282	18282		6.6235	0.75532	1	2400400			10660	13002	7485	7550	10416	10416					0.05218957474335184
EGVAPILNFT	10	Unmodified	_EGVAPILNFT_					0	0	0			REV__ENST00000590702.1_1_19:10369168-10369411:+|nuORF	REV__ENST00000590702.1_1_19:10369168-10369411:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	530.6814575195312	2	530.787307	1059.56006	-0.56556	-0.00030019	-0.72812	-0.00038648	-1.2937	-0.00068667	530.786931522723	79.793	0.56055	80.538	80.249	80.81	0.74473					17	9	2	0	0	0	0.60608	1	30262	30262		20.415	1.1575	1	4293900	+		10661	26439	7486	7551	10417	10417					0.03266323240427482
EGVGKPAKQL	10	Unmodified	_EGVGKPAKQL_					0	0	0		ENSG00000116903|ENST00000366645|EXOC8	ENSG00000116903|ENST00000366645|EXOC8	ENSG00000116903|ENST00000366645|EXOC8	MULTI-SECPEP	A375_MHC_IP_R1	1	514.2003173828125	2	513.800749	1025.58694	-0.35815	-0.00018402	-0.38796	-0.00019933	-0.74612	-0.00038335	513.8004930299304	35.889	0.50789	35.889	35.676	36.184	0					15	9	2	0	0	0	0.83355	1	11995	11995		12.241	0	1	2290600			10662	3442	7487	7552	10418	10418					0.07517431851601941
EGVNGDDGNY	10	Unmodified	_EGVNGDDGNY_					0	0	0			REV__ENSG00000166734|ENST00000299957|GOLM2	REV__ENSG00000166734|ENST00000299957|GOLM2	MULTI-MSMS	A375_MHC_IP_R2	2	521.6531372070312	2	520.201793	1038.38903	-0.85635	-0.00044548	-0.44459	-0.00023128	-1.3009	-0.00067675	520.2015058365088	36.348	0.71366	37.119	36.799	37.513	0.7709					39	13	4	0	0	0	0.71866	1	13275	13275		3.9444	3.9444	1	20614000	+		10663	20697	7488	7553	10419	10419					-0.1286265886885758
EGVSALGWLL	10	Unmodified	_EGVSALGWLL_					0	0	0		nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9;ENST00000515773.5_1_6:43164260-43192180:+|nuORF	nc|ENSG00000112659|Q8IWT3-3|CUL9	nc|ENSG00000112659|Q8IWT3-3|CUL9	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1895751953125	2	522.78985	1043.56515	-0.51025	-0.00026675	-0.75364	-0.000394	-1.2639	-0.00066075	522.789620241079	70.223	0.76105	70.957	70.591	71.352	0.73421					24	13	2	0	0	0	0.8125	1	26594	26594		24.021	4.7636	1	4939000			10664	3099	7489	7554	10420	10420					0.04510627103036313
EGWTGVIVQR	10	Unmodified	_EGWTGVIVQR_					0	0	0			REV__ENSG00000152580|ENST00000282466|IGSF10	REV__ENSG00000152580|ENST00000282466|IGSF10	MULTI-SECPEP	A375_MHC_IP_R2	2	382.60845947265625	3	382.208495	1143.60366	-0.5279	-0.00020177	0.14057	5.3727E-05	-0.38733	-0.00014804	382.20847160592183	34.036	0.30383	34.789	34.55	34.853	0.75225					8	5	2	0	0	0	0.87043	1	12247	12247		13.519	2.6197	1	4500600	+		10665	19808	7490	7555	10421	10421					0.03759932737557392
EGWTGVIVQR	10	Unmodified	_EGWTGVIVQR_					0	0	0			REV__ENSG00000152580|ENST00000282466|IGSF10	REV__ENSG00000152580|ENST00000282466|IGSF10	MULTI-MATCH	A375_MHC_IP_R1	1		3	382.208495	1143.60366	0.28883	0.00011039	5.8058	0.002219	6.0946	0.0023294	382.5439265239523	34.63	0.40576	34.63	34.353	34.759	0	-0.079565	0.006451	NaN	21.799	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4085900	+		10666	19808	7490	7555							0.03759932737557392
EGYDELQT	8	Unmodified	_EGYDELQT_					0	0	0		nc|ENSG00000015475|P55957-3|BID;ENSG00000015475|ENST00000622694|BID;nc|ENSG00000015475|P55957-2|BID	nc|ENSG00000015475|P55957-3|BID	nc|ENSG00000015475|P55957-3|BID	MULTI-SECPEP	A375_MHC_IP_R2	2	478.1058044433594	2	477.70618	953.397806	-0.79863	-0.00038151	0.27066	0.0001293	-0.52796	-0.00025221	477.70629139059525	38.925	0.56332	39.7	39.351	39.914	0.77451					17	10	2	0	0	0	0.94479	1	14375	14375		13.508	0	1	2557300			10667	1034	7491	7556	10422	10422					-0.08075685232381602
EGYDSAYNW	9	Unmodified	_EGYDSAYNW_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000031900	REV__CON__ENSEMBL:ENSBTAP00000031900	MULTI-SECPEP	A375_MHC_IP_R1	1	552.2058715820312	2	552.717079	1103.4196	-0.54479	-0.00030111	-0.7452	-0.00041189	-1.29	-0.000713	552.7165905482932	100.03	0.65657	100.03	99.673	100.33	0					31	12	3	0	0	0	0.78798	1	36867	36867		3.9444	1.3669	1	7447600	+	+	10668	15845	7492	7557	10423	10423					-0.1279688048382468
EGYEENTI	8	Unmodified	_EGYEENTI_					0	0	0			REV__ENSG00000080824|ENST00000216281|HSP90AA1	REV__ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-SECPEP	A375_MHC_IP_R1	1	478.1057434082031	2	477.70618	953.397806	-0.63553	-0.00030359	0.17817	8.5113E-05	-0.45736	-0.00021848	477.70622731459946	39.549	0.40396	39.549	39.34	39.744	0					11	7	2	0	0	0	0.97144	1	13567	13567		2.3027	0	1	4290400	+		10669	16759	7493	7558	10424	10424					-0.08075685232358865
EGYIAYRHDQ	10	Unmodified	_EGYIAYRHDQ_					0	0	0		ENSG00000105141|ENST00000427043|CASP14	ENSG00000105141|ENST00000427043|CASP14	ENSG00000105141|ENST00000427043|CASP14	MULTI-MSMS	A375_MHC_IP_R1	1	627.2002563476562	2	626.291276	1250.568	-0.45862	-0.00028723	0.34099	0.00021356	-0.11763	-7.367E-05	626.7906957358147	70.855	3.0531	70.855	68.209	71.262	0					87	59	3	0	0	0	0.6502	1	25798	25798		17.113	0.96379	1	6946900			10670	2569	7494	7559	10425	10425					-0.04726149510088362
EGYIMWYPE	9	Unmodified	_EGYIMWYPE_					0	0	0			REV__nc|ENSG00000119121|Q9BX84-4|TRPM6	REV__nc|ENSG00000119121|Q9BX84-4|TRPM6	MSMS	A375_MHC_IP_R1	1	594.2606201171875	2	594.257525	1186.5005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.24	1	145.24	144.74	145.74	0								0	0	0	0.15486	1	55679	55679		1.8442	0.19162	1		+		10671	18062	7495	7560	10426	10426					-0.08529315765258616
EGYIMWYPE	9	Unmodified	_EGYIMWYPE_					0	0	0			REV__nc|ENSG00000119121|Q9BX84-4|TRPM6	REV__nc|ENSG00000119121|Q9BX84-4|TRPM6	MSMS	A375_MHC_IP_R2	2	594.2608032226562	2	594.257525	1186.5005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.19	1	145.21	144.71	145.71	0.021408								0	0	0	0.15486	1	56690	56690		2.0598	0.21551	1		+		10672	18062	7495	7560	10427	10427					-0.08529315765258616
EGYKHYEY	8	Unmodified	_EGYKHYEY_					0	0	0			REV__ENSG00000242852|ENST00000397732|ZNF709	REV__ENSG00000242852|ENST00000397732|ZNF709	MSMS	A375_MHC_IP_R2	2	544.689453125	2	544.737814	1087.46108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.842	1	58.591	58.091	59.091	0.74894								0	0	0	0.16876	1	21875	21875		9.3474	0.60203	1		+		10673	22802	7496	7561	10428	10428					-0.07915699724480874
EGYVPCQGLY	10	Unmodified	_EGYVPCQGLY_					0	0	0		nc|ENSG00000182518|Q5XKR9-4|VCF2;nc|ENSG00000182518|Q5XKR9-6|VCF2;ENSG00000182518|ENST00000685693|FAM104B;nc|ENSG00000182518|Q5XKR9-3|VCF2	nc|ENSG00000182518|Q5XKR9-4|VCF2	nc|ENSG00000182518|Q5XKR9-4|VCF2	MSMS	A375_MHC_IP_R1	1	564.6546630859375	2	564.755149	1127.49575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.384	1	73.384	72.884	73.884	0								0	0	0	0.15308	1	26718	26718		10.824	0.75	1				10674	8413	7497	7562	10429	10429					-0.06290199908016803
EGYWQNTEL	9	Unmodified	_EGYWQNTEL_					0	0	0			REV__ENSG00000197024|ENST00000475153|ZNF398	REV__ENSG00000197024|ENST00000475153|ZNF398	MULTI-MSMS	A375_MHC_IP_R1	1	570.672119140625	2	570.253828	1138.4931	-0.079314	-4.5229E-05	-0.093432	-5.328E-05	-0.17275	-9.8509E-05	570.2537725791144	70.063	1.8844	70.063	69.326	71.211	0					76	36	3	0	0	0	0.4867	1	25294	25294		20.454	2.3073	1	2935500	+		10675	22246	7498	7563	10430	10430					-0.07060332041328365
EGYWQNTEL	9	Unmodified	_EGYWQNTEL_					0	0	0			REV__ENSG00000197024|ENST00000475153|ZNF398	REV__ENSG00000197024|ENST00000475153|ZNF398	MULTI-SECPEP	A375_MHC_IP_R1	1	570.672119140625	2	570.253828	1138.4931	-0.079314	-4.5229E-05	-0.093432	-5.328E-05	-0.17275	-9.8509E-05	570.2537725791144	70.063	1.8844	70.063	69.326	71.211	0					76	36	3	0	0	0	0.47368	1	25294	25294		20.454	6.5476	1	2935500	+		10676	22246	7498	7563	10431	10431					-0.07060332041328365
EGYWQNTEL	9	Unmodified	_EGYWQNTEL_					0	0	0			REV__ENSG00000197024|ENST00000475153|ZNF398	REV__ENSG00000197024|ENST00000475153|ZNF398	MULTI-SECPEP	A375_MHC_IP_R1	1	571.0513305664062	2	570.253828	1138.4931	-0.12241	-6.9806E-05	-0.11892	-6.7812E-05	-0.24133	-0.00013762	570.2535042099463	71.505	0.8098	71.505	71.005	71.815	0					22	15	2	0	0	0	0.65246	1	26070	26070		10.824	1.4408	1	1477800	+		10677	22246	7498	7563	10432	10432					-0.07060332041328365
EGYWQNTEL	9	Unmodified	_EGYWQNTEL_					0	0	0			REV__ENSG00000197024|ENST00000475153|ZNF398	REV__ENSG00000197024|ENST00000475153|ZNF398	MULTI-MSMS	A375_MHC_IP_R2	2	570.7132568359375	2	570.253828	1138.4931	-0.22972	-0.000131	-0.27115	-0.00015463	-0.50088	-0.00028563	570.2537219390673	69.655	1.9791	70.39	69.474	71.453	0.73421					76	38	3	0	0	0	0.29981	2	26334	26334;26456		30.637	6.616	1	2906600	+		10678	22246	7498	7563	10433;10434	10433					-0.07060332041328365
EGYWQNTEL	9	Unmodified	_EGYWQNTEL_					0	0	0			REV__ENSG00000197024|ENST00000475153|ZNF398	REV__ENSG00000197024|ENST00000475153|ZNF398	MULTI-SECPEP	A375_MHC_IP_R2	2	570.6535034179688	2	570.253828	1138.4931	-0.22972	-0.000131	-0.27115	-0.00015463	-0.50088	-0.00028563	570.2537219390673	69.655	1.9791	70.39	69.474	71.453	0.73421					76	38	3	0	0	0	0.39388	1	26474	26474		32.305	3.2239	1	2906600	+		10679	22246	7498	7563	10435	10435					-0.07060332041328365
EGYWQNTEL	9	Unmodified	_EGYWQNTEL_					0	0	0			REV__ENSG00000197024|ENST00000475153|ZNF398	REV__ENSG00000197024|ENST00000475153|ZNF398	MULTI-MATCH	A375_MHC_IP_R2	2		2	570.253828	1138.4931	-0.4348	-0.00024794	0.3266	0.00018624	-0.1082	-6.1701E-05	570.2533653703558	70.972	0.55777	71.706	71.453	72.01	0.73421	0.1005	0.00043198	NaN	10.824	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1895800	+		10680	22246	7498	7563							-0.07060332041328365
EHAEKHFHPY	10	Unmodified	_EHAEKHFHPY_					0	0	0		ENST00000464620.1_1_1:3388185-3390209:+|nuORF;ENST00000485984.1_1_1:3389348-3394597:+|nuORF;nc|ENSG00000130762|Q5VV41-2|ARHGEF16;ENSG00000130762|ENST00000378378|ARHGEF16	ENST00000464620.1_1_1:3388185-3390209:+|nuORF	ENST00000464620.1_1_1:3388185-3390209:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	648.20263671875	2	647.801811	1293.58907	-0.30256	-0.000196	1.65	0.0010688	1.3474	0.00087284	647.8027597565966	52.239	0.35313	52.239	52.034	52.387	0					11	6	2	0	0	0	0.90853	1	18616	18616		15.847	0	1	2234800			10681	4279	7499	7564	10436	10436					-0.045981394105638174
EHAIVNRFL	9	Unmodified	_EHAIVNRFL_					0	0	0			REV__ENST00000533206.1_1_11:117023163-117034692:+|nuORF	REV__ENST00000533206.1_1_11:117023163-117034692:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	367.61712646484375	3	366.873336	1097.59818	-0.1294	-4.7475E-05	0.34352	0.00012603	0.21412	7.8553E-05	367.2091290422069	23.779	0.25538	24.41	24.333	24.588	0.63014					5	4	2	0	0	0	0.77003	1	7690	7690		11.495	2.5185	1	661840	+		10682	25877	7500	7565	10437	10437					0.053282539457541134
EHASPKPC	8	Unmodified	_EHASPKPC_					0	0	0			REV__ENSG00000185668|ENST00000373012|POU3F1	REV__ENSG00000185668|ENST00000373012|POU3F1	MSMS	A375_MHC_IP_R1	1	434.6459655761719	2	434.70272	867.390887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.739	1	19.739	19.239	20.239	0								0	0	0	0.16876	1	4967	4967		9.3474	0	1		+		10683	21910	7501	7566	10438	10438					-0.04811276593943603
EHCNGSDCQCD	11	Unmodified	_EHCNGSDCQCD_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1;ENST00000476039.1_1_7:107582891-107594053:-|nuORF	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MSMS	A375_MHC_IP_R2	2	605.6796264648438	2	605.68153	1209.34851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.665	1	98.421	97.921	98.921	0.75586								0	0	0	0.16334	1	37066	37066		1.3295	0.72803	1				10684	1971	7502	7567	10439	10439					-0.24779407846767754
EHDHPHALEF	10	Unmodified	_EHDHPHALEF_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;ENST00000484626.1_1_6:7404210-7405259:+|nuORF	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	A375_MHC_IP_R2	2	616.7119750976562	2	616.278169	1230.54179	-0.97402	-0.00060027	-0.68989	-0.00042516	-1.6639	-0.0010254	616.2778480882444	38.678	0.20403	39.453	39.3	39.504	0.77451					5	3	2	0	0	0	0.70329	1	14232	14232		10.824	0.024421	1	1523400			10685	3929	7503	7568	10440	10440					-0.06426418681598989
EHDHPHALEF	10	Unmodified	_EHDHPHALEF_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;ENST00000484626.1_1_6:7404210-7405259:+|nuORF	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MATCH	A375_MHC_IP_R1	1		2	616.278169	1230.54179	-0.22661	-0.00013965	-1.3179	-0.00081218	-1.5445	-0.00095183	616.2770170792187	39.248	0.30502	39.248	39.136	39.441	0	-0.10223	-0.00044819	NaN	10.824	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1851500			10686	3929	7503	7568							-0.06426418681598989
EHEEEYDEDA	10	Unmodified	_EHEEEYDEDA_					0	0	0		nc|ENSG00000248546|O43423|ANP32CP	nc|ENSG00000248546|O43423|ANP32CP	nc|ENSG00000248546|O43423|ANP32CP	MSMS	A375_MHC_IP_R1	1	633.2277221679688	2	633.225662	1264.43677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.489	1	19.489	18.989	19.989	0								0	0	0	0.15591	1	4850	4850		1.6526	0	1				10687	14920	7504	7569	10441	10441					-0.18487049459326954
EHEWFIPARDL	11	Unmodified	_EHEWFIPARDL_					0	0	0		ENST00000511381.1_1_5:138677603-138704484:+|nuORF;ENST00000510409.1_1_5:138699473-138700456:+|nuORF;ENSG00000120727|ENST00000265192|PAIP2	ENST00000511381.1_1_5:138677603-138704484:+|nuORF	ENST00000511381.1_1_5:138677603-138704484:+|nuORF	MSMS	A375_MHC_IP_R1	1	471.4665832519531	3	471.570093	1411.68845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.338	1	32.338	31.838	32.838	0								0	0	0	0.16232	1	10440	10440		6.6235	1.9075	1				10688	3684	7505	7570	10442	10442					-0.0009274151648241968
EHEWFIPARDL	11	Unmodified	_EHEWFIPARDL_					0	0	0		ENST00000511381.1_1_5:138677603-138704484:+|nuORF;ENST00000510409.1_1_5:138699473-138700456:+|nuORF;ENSG00000120727|ENST00000265192|PAIP2	ENST00000511381.1_1_5:138677603-138704484:+|nuORF	ENST00000511381.1_1_5:138677603-138704484:+|nuORF	MSMS	A375_MHC_IP_R2	2	471.466552734375	3	471.570093	1411.68845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.56	1	32.287	31.787	32.787	0.72669								0	0	0	0.16124	1	11165	11165		12.228	7.5117	1				10689	3684	7505	7570	10443	10443					-0.0009274151648241968
EHFIELLTESS	11	Unmodified	_EHFIELLTESS_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	A375_MHC_IP_R2	2	435.60125732421875	3	435.550475	1303.6296	-0.52473	-0.00022854	-0.0318	-1.3851E-05	-0.55653	-0.00024239	435.5504540966239	41.145	0.60801	41.92	41.641	42.249	0.77451					18	11	2	0	0	0	0.73472	1	15356	15356		4.4062	1.5629	1	12360000			10690	6694	7506	7571	10444	10444					-0.010072626014789421
EHFMEVIRNQ	10	Unmodified	_EHFMEVIRNQ_					0	0	0		nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5;KLHL5|p.Y487*|1|0.29|ENSG00000109790|chr4:39103309-39103309|T/-|frameshift_variant	nc|ENSG00000109790|Q96PQ7-5|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	MULTI-MSMS	A375_MHC_IP_R1	1	434.9385986328125	3	434.880162	1301.61866	-0.07522	-3.2712E-05	-0.38311	-0.00016661	-0.45833	-0.00019932	434.88090812076246	35.294	1.8821	35.294	35.013	36.895	0					56	36	4	0	0	0	0.71455	1	12343	12343		5.7834	0	1	14809000			10691	2893	7507	7572	10445	10445					-0.020089434567353237
EHHEERWAYY	10	Unmodified	_EHHEERWAYY_					0	0	0			REV__ENSG00000189045|ENST00000601380|ANKDD1B	REV__ENSG00000189045|ENST00000601380|ANKDD1B	MULTI-SECPEP	A375_MHC_IP_R1	1	474.2738037109375	3	473.874064	1418.60036	-0.40539	-0.0001921	-1.0432	-0.00049434	-1.4486	-0.00068645	474.2077674561986	20.292	0.35531	20.292	20.079	20.435	0					15	6	3	0	0	0	0.93999	1	5166	5166		7.4771	7.4771	1	2614100	+		10692	22134	7508	7573	10446	10446					-0.09219362107091911
EHHHHYHHF	9	Unmodified	_EHHHHYHHF_					0	0	0		ENSG00000140807|ENST00000268459|NKD1	ENSG00000140807|ENST00000268459|NKD1	ENSG00000140807|ENST00000268459|NKD1	MULTI-SECPEP	A375_MHC_IP_R2	2	640.16650390625	2	640.776462	1279.53837	-0.95074	-0.00060921	-4.1674	-0.0026704	-5.1182	-0.0032796	641.2767426050042	65.895	0.30588	66.633	66.425	66.731	0.73811					7	5	2	0	0	0	0.75466	1	24989	24989		7.9102	4.3137	1	668550			10693	5185	7509	7574	10447	10447					-0.09021623944931889
EHHLHNPLW	9	Unmodified	_EHHLHNPLW_					0	0	0			REV__nc|ENSG00000182871|P39060|COL18A1	REV__nc|ENSG00000182871|P39060|COL18A1	MSMS	A375_MHC_IP_R1	1	394.9244384765625	3	394.864952	1181.57303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.42	1	34.42	33.92	34.92	0								0	0	0	0.15486	1	11344	11344		8.7454	2.5536	1		+		10694	27398	7510	7575	10448	10448					-0.01049800856822003
EHIISGGGIF	10	Unmodified	_EHIISGGGIF_					0	0	0			REV__ENST00000371227.8_1_10:97074711-97074810:-|nuORF	REV__ENST00000371227.8_1_10:97074711-97074810:-|nuORF	MSMS	A375_MHC_IP_R2	2	515.1920776367188	2	515.271824	1028.5291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.637	1	69.372	68.872	69.872	0.73511								0	0	0	0.14925	1	26008	26008		19.257	3.4098	1		+		10695	24042	7511	7576	10449	10449					0.01597169926208153
EHIKIITKR	9	Unmodified	_EHIKIITKR_					0	0	0		ENST00000441072.3_1_12:75057561-75057783:-|nuORF	ENST00000441072.3_1_12:75057561-75057783:-|nuORF	ENST00000441072.3_1_12:75057561-75057783:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	379.9605712890625	3	379.908269	1136.70298	0.17626	6.6961E-05	0.36227	0.00013763	0.53853	0.00020459	379.9082472698269	46.887	0.512	46.887	46.647	47.159	0					17	9	3	0	0	0	0.74597	1	16390	16390		16.566	10.374	1	1800200			10696	11977	7512	7577	10450	10450					0.1400937542232441
EHISLADWAD	10	Unmodified	_EHISLADWAD_					0	0	0		tr|U7ST57|U7ST57_FUSNUCoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaBCPE=3SV=1	tr|U7ST57|U7ST57_FUSNUCoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaBCPE=3SV=1	tr|U7ST57|U7ST57_FUSNUCoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaBCPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	386.9241943359375	3	386.180494	1155.51965	-0.38133	-0.00014726	-0.22856	-8.8265E-05	-0.60989	-0.00023553	386.1804986863731	23.94	0.35721	24.57	24.283	24.64	0.63015					9	6	2	0	0	0	0.85226	1	7752	7752		8.9762	3.1928	1	1853400			10697	29660	7513	7578	10451	10451					-0.05188643150017924
EHIWYPRI	8	Unmodified	_EHIWYPRI_					0	0	0		SLC23A2|p.I524Pfs*41|1|0.39|ENSG00000089057|chr20:4861987-4862003|CGAGCCCAAAGAAGATC/-|frameshift_variant;ENSG00000089057|ENST00000338244|SLC23A2;ENST00000468355.5_1_20:4850526-4913271:-|nuORF;ENST00000496331.1_1_20:4854564-4866632:-|nuORF	SLC23A2|p.I524Pfs*41|1|0.39|ENSG00000089057|chr20:4861987-4862003|CGAGCCCAAAGAAGATC/-|frameshift_variant	SLC23A2|p.I524Pfs*41|1|0.39|ENSG00000089057|chr20:4861987-4862003|CGAGCCCAAAGAAGATC/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	372.0852966308594	3	371.866181	1112.57671	0.47243	0.00017568	2.3416	0.00087075	2.814	0.0010464	371.8666788755293	20.66	0.66279	20.66	20.334	20.997	0					21	12	3	0	0	0	0.972	1	5415	5415		14.838	7.2293	1	887790			10698	1912	7514	7579	10452	10452					0.024928689170337748
EHIWYPRI	8	Unmodified	_EHIWYPRI_					0	0	0		SLC23A2|p.I524Pfs*41|1|0.39|ENSG00000089057|chr20:4861987-4862003|CGAGCCCAAAGAAGATC/-|frameshift_variant;ENSG00000089057|ENST00000338244|SLC23A2;ENST00000468355.5_1_20:4850526-4913271:-|nuORF;ENST00000496331.1_1_20:4854564-4866632:-|nuORF	SLC23A2|p.I524Pfs*41|1|0.39|ENSG00000089057|chr20:4861987-4862003|CGAGCCCAAAGAAGATC/-|frameshift_variant	SLC23A2|p.I524Pfs*41|1|0.39|ENSG00000089057|chr20:4861987-4862003|CGAGCCCAAAGAAGATC/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	372.0850524902344	3	371.866181	1112.57671	0.10243	3.8092E-05	0.99909	0.00037153	1.1015	0.00040962	371.8664248879538	22.278	0.66463	22.897	22.744	23.409	0.61932					27	12	4	0	0	0	0.972	1	7102	7102		6.2058	6.2058	1	1715700			10699	1912	7514	7579	10453	10453					0.024928689170337748
EHKGEFLYK	9	Unmodified	_EHKGEFLYK_					0	0	0			REV__ENSG00000066185|ENST00000372565|ZMYND12	REV__ENSG00000066185|ENST00000372565|ZMYND12	MULTI-SECPEP	A375_MHC_IP_R1	1	575.7184448242188	2	575.798206	1149.58186	0.019159	1.1032E-05	1.1656	0.00067118	1.1848	0.00068221	575.798819619474	68.962	0.50642	68.962	68.666	69.173	0					15	9	2	0	0	0	0.53748	1	24928	24928		30.637	26.692	1	1123600	+		10700	16510	7515	7580	10454	10454					0.013051279889850775
EHLERDLPD	9	Unmodified	_EHLERDLPD_					0	0	0		ENSG00000070985|ENST00000696290|TRPM5;nc|ENSG00000070985|Q9NZQ8-2|TRPM5	ENSG00000070985|ENST00000696290|TRPM5	ENSG00000070985|ENST00000696290|TRPM5	MULTI-SECPEP	A375_MHC_IP_R2	2	375.95196533203125	3	375.184127	1122.53055	-0.019117	-7.1723E-06	0.24879	9.334E-05	0.22967	8.6168E-05	375.18420305227005	20.047	0.76077	20.657	20.399	21.16	0.61029					26	14	3	0	0	0	0.63327	1	6299	6299		12.873	0.69786	1	2285500			10701	1506	7516	7581	10455	10455					-0.02581240775725746
EHLFRKRDYKQ	11	Unmodified	_EHLFRKRDYKQ_					0	0	0		ODF2L|p.L117F|1|0.15|ENSG00000122417|chr1:86384699-86384699|G/A|missense_variant	ODF2L|p.L117F|1|0.15|ENSG00000122417|chr1:86384699-86384699|G/A|missense_variant	ODF2L|p.L117F|1|0.15|ENSG00000122417|chr1:86384699-86384699|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	380.2767028808594	4	380.708663	1518.80554	-0.26729	-0.00010176	0.43157	0.0001643	0.16428	6.2544E-05	380.9594540074584	18.851	0.20984	19.454	19.423	19.633	0.60308					9	5	2	0	0	0	1.0012	1	5663	5663		1.1098	0.096179	1	21865000			10702	15044	7517	7582	10456	10456					0.06689416423137118
EHLFWSFILYM	11	Unmodified	_EHLFWSFILYM_					0	0	0		ENSG00000119915|ENST00000370005|ELOVL3	ENSG00000119915|ENST00000370005|ELOVL3	ENSG00000119915|ENST00000370005|ELOVL3	MULTI-SECPEP	A375_MHC_IP_R2	2	372.2665710449219	4	372.186337	1484.71624	0.11139	4.1456E-05	0.0055597	2.0693E-06	0.11694	4.3525E-05	372.18641721697855	22.303	0.30779	22.922	22.846	23.153	0.61932					8	5	2	0	0	0	0.99883	1	7092	7092		2.6312	0	1	1244400			10703	3635	7518	7583	10457	10457					-0.006725545806148148
EHLHKFILFRF	11	Unmodified	_EHLHKFILFRF_					0	0	0		ABCD3|p.N305K|1|0.22|ENSG00000117528|chr1:94487559-94487559|T/G|missense_variant	ABCD3|p.N305K|1|0.22|ENSG00000117528|chr1:94487559-94487559|T/G|missense_variant	ABCD3|p.N305K|1|0.22|ENSG00000117528|chr1:94487559-94487559|T/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	372.0850830078125	4	372.463399	1485.82449	0.17605	6.5572E-05	1.0499	0.00039103	1.2259	0.00045661	372.4637493721005	19.256	0.35287	19.859	19.633	19.986	0.60308					11	6	2	0	0	0	0.99883	1	5900	5900		1.2148	0.10508	1	1921700			10704	16	7519	7584	10458	10458					0.1010099778482072
EHLPCVVHLF	10	Unmodified	_EHLPCVVHLF_					0	0	0		OR51G1|p.R272C|1|0.4|ENSG00000278870|chr11:4923526-4923526|G/A|missense_variant	OR51G1|p.R272C|1|0.4|ENSG00000278870|chr11:4923526-4923526|G/A|missense_variant	OR51G1|p.R272C|1|0.4|ENSG00000278870|chr11:4923526-4923526|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	398.6205749511719	3	398.54271	1192.6063	-0.38871	-0.00015492	2.5007	0.00099663	2.112	0.00084172	398.87822950310647	27.032	0.45181	27.032	26.828	27.28	0					11	8	2	0	0	0	0.9269	1	8165	8165		1.7423	0.67081	1	4347500			10705	15084	7520	7585	10459	10459					0.017700648708569133
EHLQHSLFE	9	Unmodified	_EHLQHSLFE_					0	0	0			REV__ENSG00000168267|ENST00000376504|PTF1A	REV__ENSG00000168267|ENST00000376504|PTF1A	MULTI-SECPEP	A375_MHC_IP_R1	1	570.6767578125	2	570.277638	1138.54072	-0.42124	-0.00024023	-0.132	-7.5277E-05	-0.55324	-0.0003155	570.2775741181508	36.313	0.45618	36.313	36.033	36.489	0					14	8	2	0	0	0	0.49205	1	12176	12176		34.402	10.381	1	3769700	+		10706	20838	7521	7586	10460	10460					-0.023006330504813377
EHLREQFT	8	Unmodified	_EHLREQFT_					0	0	0			REV__ENST00000555793.1_1_14:93275739-93276806:+|nuORF	REV__ENST00000555793.1_1_14:93275739-93276806:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	353.30096435546875	3	353.845446	1058.51451	-0.5324	-0.00018839	-0.25292	-8.9495E-05	-0.78532	-0.00027788	353.84538531180726	19.764	0.40343	20.374	20.248	20.651	0.61029					12	7	2	0	0	0	0.97144	1	6056	6056		6.7232	0	1	699520	+		10707	16517	7522	7587	10461	10461					-0.012409022219571852
EHLRLYNSFT	10	Unmodified	_EHLRLYNSFT_					0	0	0			REV__nc|ENSG00000181896|Q8IZC7-2|ZNF101	REV__nc|ENSG00000181896|Q8IZC7-2|ZNF101	MULTI-MSMS	A375_MHC_IP_R1	1	427.617919921875	3	427.219172	1278.63569	0.043525	1.8595E-05	-0.58779	-0.00025111	-0.54426	-0.00023252	427.2187646317773	71.409	1.3705	71.409	70.749	72.119	0					49	26	4	0	0	0	0.70972	1	25895	25895		7.9454	0.90831	1	13895000	+		10708	21669	7523	7588	10462	10462					0.007513004206884943
EHLRLYNSFT	10	Unmodified	_EHLRLYNSFT_					0	0	0			REV__nc|ENSG00000181896|Q8IZC7-2|ZNF101	REV__nc|ENSG00000181896|Q8IZC7-2|ZNF101	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	427.219172	1278.63569	-0.22444	-9.5884E-05	-0.67223	-0.00028719	-0.89666	-0.00038307	427.2187297750566	70.699	1.3683	71.433	70.743	72.111	0.73421	0.011954	-6.671E-05	NaN	7.9454	43	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24537000	+		10709	21669	7523	7588							0.007513004206884943
EHLRQFAILLS	11	Unmodified	_EHLRQFAILLS_					0	0	0			REV__ENSG00000167103|ENST00000388747|PIP5KL1	REV__ENSG00000167103|ENST00000388747|PIP5KL1	MSMS	A375_MHC_IP_R2	2	442.9890441894531	3	442.922467	1325.74557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.985	1	38.759	38.259	39.259	0.77451								0	0	0	0.16232	1	13943	13943		5.5233	2.9733	1		+		10710	20731	7524	7589	10463	10463					0.09572725759903733
EHLRQQLLE	9	Unmodified	_EHLRQQLLE_					0	0	0		nc|ENSG00000213079|Q9UPN6-2|SCAF8;ENSG00000213079|ENST00000367178|SCAF8	nc|ENSG00000213079|Q9UPN6-2|SCAF8	nc|ENSG00000213079|Q9UPN6-2|SCAF8	MULTI-MSMS	A375_MHC_IP_R1	1	389.6159973144531	3	389.21565	1164.62512	0.15785	6.1436E-05	0.3983	0.00015503	0.55615	0.00021646	389.2159711382078	19.994	0.6597	19.994	19.521	20.18	0					18	12	2	0	0	0	0.65748	1	5092	5092		10.8	3.3224	1	1699900			10711	14893	7525	7590	10464	10464					0.049393177662977905
EHLSWAYIY	9	Unmodified	_EHLSWAYIY_					0	0	0			REV__ENSG00000215529|ENST00000400522|EFCAB8	REV__ENSG00000215529|ENST00000400522|EFCAB8	MULTI-SECPEP	A375_MHC_IP_R2	2	394.9241027832031	3	394.525713	1180.55531	-0.64054	-0.00025271	-2.3623	-0.000932	-3.0029	-0.0011847	394.52472837488875	33.571	0.50662	34.323	34.043	34.55	0.75225					16	9	2	0	0	0	0.69504	1	12078	12078		8.1555	0	1	1982900	+		10712	22677	7526	7591	10465	10465					-0.02774560902344092
EHNQPTSNNT	10	Unmodified	_EHNQPTSNNT_					0	0	0			REV__ENSG00000214237|ENST00000465419|MINDY4B	REV__ENSG00000214237|ENST00000465419|MINDY4B	MSMS	A375_MHC_IP_R1	1	380.94525146484375	3	381.167136	1140.47958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.565	1	70.565	70.065	71.065	0								0	0	0	0.15541	1	25624	25624		1.5923	0.26264	1		+		10713	22648	7527	7592	10466	10466					-0.08504189820564534
EHPWLIQEF	9	Unmodified	_EHPWLIQEF_					0	0	0			REV__ENST00000534635.5_1_11:36616293-36631651:+|nuORF	REV__ENST00000534635.5_1_11:36616293-36631651:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	399.63995361328125	3	400.201229	1197.58186	-0.10026	-4.0126E-05	0.33466	0.00013393	0.2344	9.3807E-05	400.5363120757329	35.448	0.50944	35.448	35.218	35.727	0					17	9	3	0	0	0	0.77834	1	11776	11776		0.23584	0	1	2034900	+		10714	25892	7528	7593	10467	10467					-0.00902872010988176
EHRKWPEW	8	Unmodified	_EHRKWPEW_					0	0	0			REV__TNN|p.G1262R|2|0.55|ENSG00000120332|chr1:175146955-175146955|G/A|missense_variant	REV__TNN|p.G1262R|2|0.55|ENSG00000120332|chr1:175146955-175146955|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	584.6969604492188	2	584.28834	1166.56213	-1.0882	-0.00063584	-0.65435	-0.00038233	-1.7426	-0.0010182	584.2879991899921	36.939	0.40437	37.71	37.513	37.917	0.7709					10	7	2	0	0	0	0.55372	1	13457	13457		48.346	4.5735	1	2882200	+		10715	28142	7529	7594	10468	10468					-0.014492032311181902
EHRSPSLALGF	11	Unmodified	_EHRSPSLALGF_					0	0	0		ENST00000495878.5_1_11:72396626-72397118:-|nuORF	ENST00000495878.5_1_11:72396626-72397118:-|nuORF	ENST00000495878.5_1_11:72396626-72397118:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	405.2926940917969	3	405.21565	1212.62512	-0.43255	-0.00017528	0.60411	0.00024479	0.17155	6.9516E-05	405.5502019887316	34.228	0.35237	34.228	34.001	34.353	0					10	6	2	0	0	0	0.97636	1	11278	11278		19.987	12.041	1	1446600			10716	12713	7530	7595	10469	10469					0.02731317766256325
EHSEKLHQL	9	Unmodified	_EHSEKLHQL_					0	0	0			REV__ENSG00000076382|ENST00000321765|SPAG5	REV__ENSG00000076382|ENST00000321765|SPAG5	MULTI-MSMS	A375_MHC_IP_R2	2	374.59637451171875	3	374.196367	1119.56727	0.19229	7.1955E-05	0.93091	0.00034834	1.1232	0.0004203	374.19624970736305	30.089	0.65927	30.808	30.557	31.216	0.71857					22	12	2	0	0	0	0.67332	1	10580	10580		6.1918	2.0752	1	2101100	+		10717	16674	7531	7596	10470	10470					0.012270558408772558
EHSLSQLDWT	10	Unmodified	_EHSLSQLDWT_					0	0	0		ENSG00000186474|ENST00000684732|KLK12;nc|ENSG00000186474|Q9UKR0-2|KLK12	ENSG00000186474|ENST00000684732|KLK12	ENSG00000186474|ENST00000684732|KLK12	MULTI-MSMS	A375_MHC_IP_R2	2	405.58770751953125	3	405.859532	1214.55677	-0.48481	-0.00019677	-0.25532	-0.00010363	-0.74014	-0.00030039	405.8593871881736	33.642	0.6078	34.394	34.095	34.702	0.75225					24	11	3	0	0	0	0.70651	1	12119	12119		5.4027	0.68679	1	3647800			10718	8750	7532	7597	10471	10471					-0.04192971604265949
EHSLSQLDWT	10	Unmodified	_EHSLSQLDWT_					0	0	0		ENSG00000186474|ENST00000684732|KLK12;nc|ENSG00000186474|Q9UKR0-2|KLK12	ENSG00000186474|ENST00000684732|KLK12	ENSG00000186474|ENST00000684732|KLK12	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	405.859532	1214.55677	-0.41	-0.0001664	0.23191	9.4125E-05	-0.17809	-7.228E-05	405.85952614803415	34.35	0.505	34.35	34.103	34.608	0	-0.022428	0.0002846	NaN	5.4027	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4470100			10719	8750	7532	7597							-0.04192971604265949
EHSMPYYWV	9	Unmodified	_EHSMPYYWV_					0	0	0		ENST00000261254.7_1_12:4412953-4413079:+|nuORF	ENST00000261254.7_1_12:4412953-4413079:+|nuORF	ENST00000261254.7_1_12:4412953-4413079:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	404.9104309082031	3	404.511187	1210.51173	-0.23694	-9.5846E-05	-0.55891	-0.00022608	-0.79585	-0.00032193	404.84537788914344	23.859	0.25577	24.489	24.384	24.64	0.63015					7	4	2	0	0	0	0.80101	1	7777	7777		5.2969	2.2246	1	2120000			10720	10278	7533	7598	10472	10472					-0.0851049367113319
EHTCWCFWVA	10	Unmodified	_EHTCWCFWVA_					0	0	0		ENST00000559729.5_1_15:85212968-85213184:-|nuORF	ENST00000559729.5_1_15:85212968-85213184:-|nuORF	ENST00000559729.5_1_15:85212968-85213184:-|nuORF	MSMS	A375_MHC_IP_R2	2	427.777587890625	3	427.844171	1280.51068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.102	1	20.712	20.212	21.212	0.61029								0	0	0	0.15531	1	6229	6229		3.5871	0.74377	1				10721	13483	7534	7599	10473	10473					-0.11835031311670718
EHTHTLYDLG	10	Unmodified	_EHTHTLYDLG_					0	0	0			REV__ENST00000529222.1_1_11:133735272-133735416:-|nuORF	REV__ENST00000529222.1_1_11:133735272-133735416:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	395.2509765625	3	395.85601	1184.5462	-0.11555	-4.5743E-05	-0.034172	-1.3527E-05	-0.14973	-5.927E-05	395.8560296164994	27.241	0.30582	27.92	27.741	28.047	0.67857					8	5	2	0	0	0	0.92603	1	9296	9296		12.873	0	1	5369100	+		10722	25816	7535	7600	10474	10474					-0.03868954258700796
EHTVPSPASDR	11	Unmodified	_EHTVPSPASDR_					0	0	0			REV__DNAAF2|p.P280T|1|0.18|ENSG00000165506|chr14:49634312-49634312|G/T|missense_variant	REV__DNAAF2|p.P280T|1|0.18|ENSG00000165506|chr14:49634312-49634312|G/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	399.63995361328125	3	399.194915	1194.56291	-0.063017	-2.5156E-05	2.6748	0.0010677	2.6117	0.0010426	399.19603732554594	35.36	0.45763	35.36	35.116	35.573	0					13	8	2	0	0	0	0.99424	1	11776	11776		1.0136	0	1	869250	+		10723	16001	7536	7601	10475	10475					-0.026584533727373127
EHVFALRPV	9	Unmodified	_EHVFALRPV_					0	0	0		ENSG00000082781|ENST00000296181|ITGB5	ENSG00000082781|ENST00000296181|ITGB5	ENSG00000082781|ENST00000296181|ITGB5	MULTI-SECPEP	A375_MHC_IP_R2	2	534.6786499023438	2	534.303458	1066.59236	-0.84066	-0.00044917	0.1383	7.3892E-05	-0.70236	-0.00037527	534.3038284889657	65.017	0.76163	65.755	65.41	66.172	0.73811					23	14	3	0	0	0	0.58271	1	24742	24742		20.454	15.698	1	2213600			10724	1766	7537	7602	10476	10476					0.061731554340894945
EHVKHFVIN	9	Unmodified	_EHVKHFVIN_					0	0	0		ENSG00000084674|ENST00000233242|APOB;APOB|p.F2409Lfs*15|1|0.3|ENSG00000084674|chr2:21009641-21009641|A/-|frameshift_variant	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MSMS	A375_MHC_IP_R2	2	561.7698974609375	2	561.806365	1121.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.5	1	102.26	101.76	102.76	0.76428								0	0	0	0.1493	1	38471	38471		22.736	3.4793	1				10725	1799	7538	7603	10477	10477					0.042242539457674866
EHVLEKIVES	10	Unmodified	_EHVLEKIVES_					0	0	0		ENSG00000018236|ENST00000551295|CNTN1;nc|ENSG00000018236|Q12860-2|CNTN1	ENSG00000018236|ENST00000551295|CNTN1	ENSG00000018236|ENST00000551295|CNTN1	MULTI-MSMS	A375_MHC_IP_R2	2	395.5963134765625	3	394.883677	1181.6292	-0.13337	-5.2665E-05	0.94132	0.00037171	0.80795	0.00031905	394.8839533177609	27.539	1.1682	28.218	27.69	28.858	0.67857					54	22	3	0	0	0	0.70972	1	9277	9277		7.9454	1.7536	1	4137300			10726	1045	7539	7604	10478	10478					0.04565362469338652
EHVQASHFEG	10	Unmodified	_EHVQASHFEG_					0	0	0		nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-5|MARCHF6	nc|ENSG00000145495|O60337-5|MARCHF6	MSMS	A375_MHC_IP_R1	1	570.6767578125	2	570.757069	1139.49959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.385	1	36.385	35.885	36.885	0								0	0	0	0.15332	1	12176	12176		10.074	0	1				10727	14662	7540	7605	10479	10479					-0.06458394089963804
EHVSRQREVY	10	Unmodified	_EHVSRQREVY_					0	0	0			REV__nc|ENSG00000204209|Q9UER7-3|DAXX	REV__nc|ENSG00000204209|Q9UER7-3|DAXX	MULTI-MSMS	A375_MHC_IP_R1	1	434.94586181640625	3	434.889825	1301.64765	-0.090286	-3.9264E-05	-0.085304	-3.7098E-05	-0.17559	-7.6362E-05	434.88967309591067	20.341	0.30528	20.341	20.129	20.435	0					7	5	2	0	0	0	0.70027	1	5178	5178		12.175	0.68004	1	1003400	+		10728	22496	7541	7606	10480	10480					0.008889171639111737
EHVVFDSYREK	11	Unmodified	_EHVVFDSYREK_					0	0	0			REV__ENSG00000091127|ENST00000469408|PUS7	REV__ENSG00000091127|ENST00000469408|PUS7	MULTI-SECPEP	A375_MHC_IP_R1	1	353.3529968261719	4	352.926846	1407.67828	0.22139	7.8135E-05	-2.7609	-0.00097439	-2.5395	-0.00089626	353.1766999907454	21.834	0.20451	21.834	21.757	21.962	0					5	3	2	0	0	0	0.99732	1	5776	5776		6.6235	2.2173	1	656940	+		10729	16942	7542	7607	10481	10481					-0.009253492417201414
EHWFTVRKLEK	11	Unmodified	_EHWFTVRKLEK_					0	0	0		ATXN3|p.G127E|1|0.25|ENSG00000066427|chr14:92093259-92093259|C/T|missense_variant	ATXN3|p.G127E|1|0.25|ENSG00000066427|chr14:92093259-92093259|C/T|missense_variant	ATXN3|p.G127E|1|0.25|ENSG00000066427|chr14:92093259-92093259|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	491.6297607421875	3	491.605137	1471.79358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.425	1	49.425	48.925	49.925	0								0	0	0	0.16309	1	17479	17479		2.6312	0.19645	1				10730	217	7543	7608	10482	10482					0.07655799679923803
EHYEEIEDYDY	11	Unmodified	_EHYEEIEDYDY_					0	0	0		ENSG00000121152|ENST00000240423|NCAPH;nc|ENSG00000121152|Q15003-2|NCAPH	ENSG00000121152|ENST00000240423|NCAPH	ENSG00000121152|ENST00000240423|NCAPH	MSMS	A375_MHC_IP_R1	1	752.7902221679688	2	752.791169	1503.56778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.71	1	52.71	52.21	53.21	0								0	0	0	0.16334	1	18760	18760		1.3295	0	1				10731	3709	7544	7609	10483	10483					-0.16385658811259418
EHYHCKKRW	9	Unmodified	_EHYHCKKRW_					0	0	0			REV__ENST00000491680.6_1_2:30670236-30756121:+|nuORF	REV__ENST00000491680.6_1_2:30670236-30756121:+|nuORF	MSMS	A375_MHC_IP_R1	1	429.6293029785156	3	429.545225	1285.61384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.6	1	56.6	56.1	57.1	0								0	0	0	0.15486	1	20280	20280		8.1555	1.5252	1		+		10732	25023	7545	7610	10484	10484					-0.017537828088734386
EHYKQAMRTIY	11	Unmodified	_EHYKQAMRTIY_					0	0	0			REV__ENSG00000110057|ENST00000227471|UNC93B1	REV__ENSG00000110057|ENST00000227471|UNC93B1	MSMS	A375_MHC_IP_R1	1	480.63226318359375	3	480.57485	1438.70272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.602	1	33.602	33.102	34.102	0								0	0	0	0.16172	1	10986	10986		9.7643	3.1408	1		+		10733	17611	7546	7611	10485	10485					0.0009158764014500775
EHYKQAMRTIY	11	Unmodified	_EHYKQAMRTIY_					0	0	0			REV__ENSG00000110057|ENST00000227471|UNC93B1	REV__ENSG00000110057|ENST00000227471|UNC93B1	MSMS	A375_MHC_IP_R2	2	480.63226318359375	3	480.57485	1438.70272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.858	1	33.594	33.094	34.094	0.73692								0	0	0	0.16232	1	11731	11731		6.6235	0	1		+		10734	17611	7546	7611	10486	10486					0.0009158764014500775
EHYRLDWQCTW	11	Unmodified	_EHYRLDWQCTW_					0	0	0			REV__ENSG00000196576|ENST00000359337|PLXNB2	REV__ENSG00000196576|ENST00000359337|PLXNB2	MULTI-SECPEP	A375_MHC_IP_R1	1	512.6768798828125	3	512.894471	1535.66158	-0.38775	-0.00019887	0.17199	8.8215E-05	-0.21576	-0.00011066	512.8945969959374	42.333	0.4552	42.333	42.082	42.537	0					20	8	3	0	0	0	1.0012	1	14622	14622		0.36667	0	1	6023800	+		10735	22210	7547	7612	10487	10487					-0.0848217339932944
EHYSKVHVL	9	Unmodified	_EHYSKVHVL_					0	0	0			REV__ENST00000357814.7_2_17:72767250-72767442:-|nuORF	REV__ENST00000357814.7_2_17:72767250-72767442:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	371.5820007324219	3	371.201341	1110.58219	0.27825	0.00010329	-0.50109	-0.00018601	-0.22284	-8.272E-05	371.20133529769333	40.559	0.86407	41.333	40.93	41.794	0.77451					23	16	3	0	0	0	0.73141	1	15204	15204		4.1895	4.1895	1	3627400	+		10736	23850	7548	7613	10488	10488					0.03132547708855782
EHYVLVAPRT	10	Unmodified	_EHYVLVAPRT_					0	0	0			REV__ENST00000582359.5_1_17:72768918-72770027:-|nuORF	REV__ENST00000582359.5_1_17:72768918-72770027:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	394.9598388671875	3	395.552262	1183.63496	-0.29266	-0.00011576	0.16308	6.4506E-05	-0.12959	-5.1258E-05	395.5521612696216	23.93	0.25367	23.93	23.737	23.991	0					9	4	3	0	0	0	0.92227	1	6614	6614		7.9454	5.2102	1	3711400	+		10737	26357	7549	7614	10489	10489					0.05048505771651435
EIADQFFV	8	Unmodified	_EIADQFFV_					0	0	0			REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	MULTI-MSMS	A375_MHC_IP_R1	1	485.1384582519531	2	484.739825	967.465098	-0.20184	-9.7839E-05	-1.6386	-0.0007943	-1.8404	-0.00089214	484.7390471644336	91.982	1.1132	91.982	91.35	92.463	0					25	21	2	0	0	0	0.68964	1	33823	33823		37.974	3.8716	1	1701500	+		10738	17885	7550	7615	10490	10490					-0.01993610230761078
EIADQFFV	8	Unmodified	_EIADQFFV_					0	0	0			REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	MULTI-MSMS	A375_MHC_IP_R2	2	485.1384582519531	2	484.739825	967.465098	-0.49965	-0.0002422	-1.2824	-0.00062163	-1.7821	-0.00086383	484.73932527283733	91.21	0.75934	91.945	91.514	92.273	0.7345					21	14	2	0	0	0	0.68964	1	34733	34733		37.974	3.8716	1	2010100	+		10739	17885	7550	7615	10491	10491					-0.01993610230761078
EIADQFFV	8	Unmodified	_EIADQFFV_					0	0	0			REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	484.739825	967.465098	-0.20184	-9.7839E-05	-1.6386	-0.0007943	-1.8404	-0.00089214	484.7390471644336	91.982	1.1132	91.982	91.35	92.463	0	0.018359	-0.00018795	NaN	37.974	25	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1701500	+		10740	17885	7550	7615							-0.01993610230761078
EIADQFFV	8	Unmodified	_EIADQFFV_					0	0	0			REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	484.739825	967.465098	-0.49965	-0.0002422	-1.2824	-0.00062163	-1.7821	-0.00086383	484.73932527283733	91.21	0.75934	91.945	91.514	92.273	0.7345	-0.018359	0.00015737	NaN	37.974	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2010100	+		10741	17885	7550	7615							-0.01993610230761078
EIAFLKKL	8	Unmodified	_EIAFLKKL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	A375_MHC_IP_R2	2	481.707275390625	2	481.307678	960.600803	-0.57117	-0.00027491	-0.18364	-8.8386E-05	-0.75481	-0.00036329	481.30753879769816	70.624	0.40443	71.358	71.149	71.553	0.73421					12	7	2	0	0	0	0.73227	1	26810	26810		30.637	0	1	3091200			10742	1093	7551	7616	10492	10492					0.11892709350718178
EIAIQMEKF	9	Unmodified	_EIAIQMEKF_					0	0	0			REV__ENST00000535325.5_1_3:45960546-45960702:-|nuORF	REV__ENST00000535325.5_1_3:45960546-45960702:-|nuORF	MSMS	A375_MHC_IP_R2	2	554.6878051757812	2	554.788992	1107.56343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.163	1	70.897	70.397	71.397	0.73421								0	0	0	0.15142	1	26597	26597		19.257	2.3147	1		+		10743	25898	7552	7617	10493	10493					0.013952500227787823
EIAKSIREY	9	Unmodified	_EIAKSIREY_					0	0	0		tr|U7SNS5|U7SNS5_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01742PE=4SV=1	tr|U7SNS5|U7SNS5_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01742PE=4SV=1	tr|U7SNS5|U7SNS5_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01742PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	554.6749267578125	2	554.803488	1107.59242	-0.57928	-0.00032138	-2.9828	-0.0016549	-3.5621	-0.0019763	555.3028237005597	77.34	0.40372	77.34	77.083	77.486	0					11	7	2	0	0	0	0.73363	1	28153	28153		15.847	13.544	1	624310			10744	29561	7553	7618	10494	10494					0.04293110643448017
EIAMLVQSAL	10	Unmodified	_EIAMLVQSAL_					0	0	0		ENSG00000237649|ENST00000428849|KIFC1	ENSG00000237649|ENST00000428849|KIFC1	ENSG00000237649|ENST00000428849|KIFC1	MSMS	A375_MHC_IP_R2	2	537.7044067382812	2	537.796817	1073.57908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.05	1	100.81	100.31	101.31	0.76278								0	0	0	0.14804	1	37943	37943		21.537	0.66577	1				10745	9758	7554	7619	10495	10495					0.045235365398411886
EIANIVDQN	9	Unmodified	_EIANIVDQN_					0	0	0			REV__ENST00000487222.5_1_7:100401085-100421908:-|nuORF;REV__nc|ENSG00000154928|P54762-5|EPHB1	REV__ENST00000487222.5_1_7:100401085-100421908:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	508.6813049316406	2	508.256371	1014.49819	-1.0668	-0.00054221	1.2929	0.0006571	0.22606	0.0001149	508.75844885488686	60.257	0.30627	61.002	60.751	61.057	0.74504					8	5	2	0	0	0	0.63327	1	22818	22818		18.146	0	1	507910	+		10746	22193;19907	7555	7620	10496	10496					-0.008480281787115018
EIARAGEIFE	10	Unmodified	_EIARAGEIFE_					0	0	0		PXDNL|p.M658I|1|0.48|ENSG00000147485|chr8:51411338-51411338|C/T|missense_variant	PXDNL|p.M658I|1|0.48|ENSG00000147485|chr8:51411338-51411338|C/T|missense_variant	PXDNL|p.M658I|1|0.48|ENSG00000147485|chr8:51411338-51411338|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	379.2767639160156	3	378.864506	1133.57169	0.57772	0.00021888	-3.256	-0.0012336	-2.6783	-0.0010147	379.53005755458696	39.121	0.35726	39.121	38.983	39.34	0					12	6	3	0	0	0	0.86608	1	13428	13428		17.863	4.9906	1	1756900			10747	15259	7556	7621	10497	10497					0.010245202637634065
EIARAGEIFE	10	Unmodified	_EIARAGEIFE_					0	0	0		PXDNL|p.M658I|1|0.48|ENSG00000147485|chr8:51411338-51411338|C/T|missense_variant	PXDNL|p.M658I|1|0.48|ENSG00000147485|chr8:51411338-51411338|C/T|missense_variant	PXDNL|p.M658I|1|0.48|ENSG00000147485|chr8:51411338-51411338|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	378.864506	1133.57169	-0.21917	-8.3037E-05	-9.4719	-0.0035886	-9.6911	-0.0036716	379.1962890397386	38.268	0.30709	39.042	38.791	39.098	0.77451	-0.039263	-0.0027755	NaN	17.863	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1024300			10748	15259	7556	7621							0.010245202637634065
EIARYYKHY	9	Unmodified	_EIARYYKHY_					0	0	0		nc|ENSG00000164823|Q9Y236|OSGIN2;ENSG00000164823|ENST00000451899|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	MULTI-SECPEP	A375_MHC_IP_R2	2	415.6431884765625	3	414.880379	1241.61931	-0.23317	-9.6737E-05	-3.0308	-0.0012574	-3.264	-0.0013542	414.8790219722886	40.866	0.40555	41.641	41.489	41.895	0.77451					17	7	3	0	0	0	0.78753	1	15223	15223		8.1555	0.54658	1	1715700			10749	6884	7557	7622	10498	10498					0.008162192546024016
EICCWCACY	9	Unmodified	_EICCWCACY_					0	0	0		TAAR6|p.Y301C|1|0.94|ENSG00000146383|chr6:132571223-132571223|A/G|missense_variant	TAAR6|p.Y301C|1|0.94|ENSG00000146383|chr6:132571223-132571223|A/G|missense_variant	TAAR6|p.Y301C|1|0.94|ENSG00000146383|chr6:132571223-132571223|A/G|missense_variant	MSMS	A375_MHC_IP_R2	2	547.1995239257812	2	547.184134	1092.35371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.645	1	77.385	76.885	77.885	0.74052								0	0	0	0.15486	1	29100	29100		8.5933	4.264	1				10750	29288	7558	7623	10499	10499					-0.1887677551787874
EICEEYGIAY	10	Unmodified	_EICEEYGIAY_					0	0	0			REV__nc|ENSG00000120458|Q6P1R3-2|MSANTD2	REV__nc|ENSG00000120458|Q6P1R3-2|MSANTD2	MULTI-SECPEP	A375_MHC_IP_R1	1	595.1563720703125	2	595.257722	1188.50089	-0.42684	-0.00025408	0.50831	0.00030257	0.081465	4.8493E-05	595.2583897355051	76.001	0.75693	76.001	75.664	76.421	0					22	14	2	0	0	0	0.93615	1	27686	27686		7.2892	0	1	2907400	+		10751	18124	7559	7624	10500	10500					-0.08581940836052127
EICMECCG	8	Unmodified	_EICMECCG_					0	0	0		ENSG00000112559|ENST00000230321|MDFI;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC;nc|ENSG00000135272|Q9P1T7-1|MDFIC	ENSG00000112559|ENST00000230321|MDFI;ENST00000431629.5_2_7:114654517-114655986:+|nuORF	ENST00000431629.5_2_7:114654517-114655986:+|nuORF	MSMS	A375_MHC_IP_R1	1	444.1393127441406	2	444.141935	886.269317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.109	1	95.109	94.609	95.609	0								0	0	0	0.16876	1	34957	34957		0.79363	0	1				10752	4663;3094	7560	7625	10501	10501					-0.17836726334621744
EICMECCG	8	Unmodified	_EICMECCG_					0	0	0		ENSG00000112559|ENST00000230321|MDFI;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC;nc|ENSG00000135272|Q9P1T7-1|MDFIC	ENSG00000112559|ENST00000230321|MDFI;ENST00000431629.5_2_7:114654517-114655986:+|nuORF	ENST00000431629.5_2_7:114654517-114655986:+|nuORF	MSMS	A375_MHC_IP_R1	1	444.1648254394531	2	444.141935	886.269317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.35	1	103.35	102.85	103.85	0								0	0	0	0.16876	1	37965	37965		0.79363	0	1				10753	4663;3094	7560	7625	10502	10502					-0.17836726334621744
EICMECCG	8	Unmodified	_EICMECCG_					0	0	0		ENSG00000112559|ENST00000230321|MDFI;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC;nc|ENSG00000135272|Q9P1T7-1|MDFIC	ENSG00000112559|ENST00000230321|MDFI;ENST00000431629.5_2_7:114654517-114655986:+|nuORF	ENST00000431629.5_2_7:114654517-114655986:+|nuORF	MSMS	A375_MHC_IP_R2	2	444.14801025390625	2	444.141935	886.269317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.076	1	27.755	27.255	28.255	0.67857								0	0	0	0.16876	1	9213	9213		0.79363	0	1				10754	4663;3094	7560	7625	10503	10503					-0.17836726334621744
EICMECCG	8	Unmodified	_EICMECCG_					0	0	0		ENSG00000112559|ENST00000230321|MDFI;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC;nc|ENSG00000135272|Q9P1T7-1|MDFIC	ENSG00000112559|ENST00000230321|MDFI;ENST00000431629.5_2_7:114654517-114655986:+|nuORF	ENST00000431629.5_2_7:114654517-114655986:+|nuORF	MSMS	A375_MHC_IP_R2	2	444.1643981933594	2	444.141935	886.269317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.64	1	108.39	107.89	108.89	0.75436								0	0	0	0.16876	1	40659	40659		0.79363	0	1				10755	4663;3094	7560	7625	10504	10504					-0.17836726334621744
EICNETKLGGL	11	Unmodified	_EICNETKLGGL_					0	0	0			REV__nc|ENSG00000156219|Q13508-2|ART3	REV__nc|ENSG00000156219|Q13508-2|ART3	MULTI-SECPEP	A375_MHC_IP_R1	1	393.3011779785156	3	392.869151	1175.58562	0.28976	0.00011384	-0.5636	-0.00022142	-0.27384	-0.00010758	393.2037709107643	42.815	1.1157	42.815	42.285	43.4	0					37	19	3	0	0	0	0.80621	1	14917	14917		24.957	9.2185	1	1231000	+		10756	19968	7561	7626	10505	10505					0.004854297005522312
EICNWQEI	8	Carbamidomethyl (C)	_EIC(Carbamidomethyl (C))NWQEI_	EIC(1)NWQEI		EIC(44)NWQEI		0	1	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|32|1|sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|32|1|sense	MULTI-MSMS	A375_MHC_IP_R1	1	546.152099609375	2	546.244949	1090.47534	-0.52403	-0.00028625	0.1475	8.0571E-05	-0.37653	-0.00020568	546.2451266080295	38.478	2.4941	38.478	37.964	40.458	0					66	48	2	0	0	0	0.62444	1	12842	12842		43.858	14.777	1	2640800	+		10757	26910	7562	7627	10506	10506	88				-0.06627370567844082
EICRLRFRH	9	Unmodified	_EICRLRFRH_					0	0	0		ENSG00000137338|ENST00000682144|PGBD1	ENSG00000137338|ENST00000682144|PGBD1	ENSG00000137338|ENST00000682144|PGBD1	MSMS	A375_MHC_IP_R2	2	615.4119262695312	2	615.337841	1228.66113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.447	1	83.19	82.69	83.69	0.74293								0	0	0	0.15486	1	31318	31318		10.074	0.6908	1				10758	4878	7563	7628	10507	10507					0.055944964621403415
EICRTVSGDL	10	Unmodified	_EICRTVSGDL_					0	0	0		ENSG00000081248|ENST00000362061|CACNA1S;CACNA1S|p.P1568L|1|0.55|ENSG00000081248|chr1:201044422-201044422|G/A|missense_variant	ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	MSMS	A375_MHC_IP_R2	2	546.674072265625	2	546.771331	1091.52811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.67	1	83.413	82.913	83.913	0.74293								0	0	0	0.15288	1	31406	31406		11.495	1.3113	1				10759	1734	7564	7629	10508	10508					-0.013994125050203365
EICTKLMEL	9	Unmodified	_EICTKLMEL_					0	0	0		ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MULTI-MSMS	A375_MHC_IP_R2	2	540.6932373046875	2	540.277403	1078.54025	-0.84494	-0.0004565	-0.55738	-0.00030114	-1.4023	-0.00075764	540.2772202541888	76.862	2.4392	77.605	76.541	78.98	0.74293					69	47	2	0	0	0	0.51106	1	29352	29352		19.257	2.3147	1	3478200			10760	1572	7565	7630	10509	10509					0.0041248791380894545
EICYNLKKY	9	Unmodified	_EICYNLKKY_					0	0	0		tr|U7SSU7|U7SSU7_FUSNUDUF3601domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01381PE=4SV=1	tr|U7SSU7|U7SSU7_FUSNUDUF3601domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01381PE=4SV=1	tr|U7SSU7|U7SSU7_FUSNUDUF3601domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01381PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	391.26177978515625	3	391.870603	1172.58998	0.15511	6.0782E-05	0.36756	0.00014404	0.52267	0.00020482	391.8707447900991	25.13	0.91429	25.13	25.002	25.917	0					22	17	2	0	0	0	0.62767	1	7275	7275		11.495	2.5185	1	15629000			10761	29652	7566	7631	10510	10510					0.0105893891411597
EIDDVYEKY	9	Unmodified	_EIDDVYEKY_					0	0	0		nc|ENSG00000168556|Q9H160-2|ING2;ENSG00000168556|ENST00000302327|ING2	nc|ENSG00000168556|Q9H160-2|ING2	nc|ENSG00000168556|Q9H160-2|ING2	MULTI-MSMS	A375_MHC_IP_R1	1	587.6685791015625	2	587.269144	1172.52373	-0.30075	-0.00017662	-0.15987	-9.3887E-05	-0.46062	-0.00027051	587.269048407372	50.36	0.56307	50.36	50.049	50.613	0					24	10	3	0	0	0	0.0094639	2	17832	17811;17832		106.94	74.635	1	4582800			10762	7319	7567	7632	10511;10512	10512					-0.05562598446931588
EIDDVYEKY	9	Unmodified	_EIDDVYEKY_					0	0	0		nc|ENSG00000168556|Q9H160-2|ING2;ENSG00000168556|ENST00000302327|ING2	nc|ENSG00000168556|Q9H160-2|ING2	nc|ENSG00000168556|Q9H160-2|ING2	MULTI-MSMS	A375_MHC_IP_R2	2	587.6686401367188	2	587.269144	1172.52373	-0.8366	-0.00049131	0.41939	0.00024629	-0.41721	-0.00024502	587.2692600004058	49.768	0.45869	50.522	50.244	50.702	0.75406					21	8	3	0	0	0	0.035419	2	18686	18686;18741		70.332	39.695	1	5167500			10763	7319	7567	7632	10513;10514	10513					-0.05562598446931588
EIDETSGRYYP	11	Unmodified	_EIDETSGRYYP_					0	0	0		tr|U7SN90|U7SN90_FUSNUKnr4/Smi1-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01753PE=4SV=1	tr|U7SN90|U7SN90_FUSNUKnr4/Smi1-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01753PE=4SV=1	tr|U7SN90|U7SN90_FUSNUKnr4/Smi1-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01753PE=4SV=1	MSMS	A375_MHC_IP_R1	1	665.1593017578125	2	665.301507	1328.58846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.179	1	75.179	74.679	75.679	0								0	0	0	0.15541	1	27388	27388		17.113	3.2068	1				10764	29544	7568	7633	10515	10515					-0.06269023640925298
EIDGFNATAW	10	Unmodified	_EIDGFNATAW_					0	0	0			REV__tr|U7SKX5|U7SKX5_FUSNUSWIM-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01980PE=4SV=1	REV__tr|U7SKX5|U7SKX5_FUSNUSWIM-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01980PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	562.2000732421875	2	562.256371	1122.49819	-0.35442	-0.00019927	-0.15015	-8.4421E-05	-0.50456	-0.00028369	562.7578237064167	88.587	0.61109	88.587	88.103	88.714	0					16	11	2	0	0	0	0.71245	1	32360	32360		6.7232	1.4925	1	2648100	+		10765	28261	7569	7634	10516	10516					-0.05816028178742272
EIDGRSISLY	10	Unmodified	_EIDGRSISLY_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;ENST00000494618.1_1_2:232322276-232325237:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	A375_MHC_IP_R2	2	577.2296142578125	2	576.798403	1151.58225	-0.15206	-8.7706E-05	-1.1866	-0.00068445	-1.3387	-0.00077215	577.2987130843782	67.444	0.40853	68.18	67.951	68.359	0.73631					12	7	2	0	0	0	0.27133	1	25587	25587		41.956	3.9816	1	1821900			10766	3266	7570	7635	10517	10517					0.01252502918191567
EIDHEQLPS	9	Unmodified	_EIDHEQLPS_					0	0	0			REV__nc|ENSG00000103034|Q9ULP0-8|NDRG4	REV__nc|ENSG00000103034|Q9ULP0-8|NDRG4	MULTI-SECPEP	A375_MHC_IP_R2	2	534.0816040039062	2	534.253828	1066.4931	-0.79127	-0.00042274	-1.7575	-0.00093896	-2.5488	-0.0013617	534.2537235724521	74.135	0.40501	74.872	74.706	75.111	0.73752					15	7	3	0	0	0	0.3213	1	28166	28166		24.021	0	1	1472800	+		10767	27154	7571	7636	10518	10518					-0.0374833204132301
EIDHIDKDI	9	Unmodified	_EIDHIDKDI_					0	0	0			REV__ENSG00000196417|ENST00000396408|ZNF765	REV__ENSG00000196417|ENST00000396408|ZNF765	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6452026367188	2	549.277303	1096.54005	-1.1692	-0.0006422	2.6418	0.0014511	1.4727	0.0008089	549.2789682082824	57.196	0.50893	57.946	57.612	58.121	0.75008					11	9	2	0	0	0	0.50702	1	21502	21502		25.399	7.253	1	785140	+		10768	22194	7572	7637	10519	10519					-0.0043547249019866285
EIDIFNNQL	9	Unmodified	_EIDIFNNQL_					0	0	0		SON-ITSN1|1|fusion;SON-ITSN1|2|fusion;ENSG00000205726|ENST00000381318|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-4|ITSN1;nc|ENSG00000205726|Q15811-13|ITSN1;nc|ENSG00000205726|Q15811-2|ITSN1;nc|ENSG00000205726|Q15811-7|ITSN1;nc|ENSG00000205726|Q15811-10|ITSN1;nc|ENSG00000205726|Q15811-3|ITSN1;nc|ENSG00000205726|Q15811-11|ITSN1;nc|ENSG00000205726|Q15811-12|ITSN1;nc|ENSG00000205726|Q15811-6|ITSN1;CON__ENSEMBL:ENSBTAP00000001528;nc|ENSG00000205726|Q15811-5|ITSN1	SON-ITSN1|1|fusion;nc|ENSG00000205726|Q15811-5|ITSN1	SON-ITSN1|1|fusion	MULTI-SECPEP	A375_MHC_IP_R2	2	553.1787109375	2	553.279846	1104.54514	-0.69711	-0.0003857	0.93558	0.00051763	0.23846	0.00013194	553.2807127502034	93.032	0.55812	93.771	93.392	93.95	0.73902					15	10	2	0	0	0	0.74412	1	35373	35373		6.2058	0	1	1651700			10769	29217;14867	7573	7638	10520	10520					-0.0029516862757645868
EIDIPHVW	8	Unmodified	_EIDIPHVW_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046395-184046545:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-SECPEP	A375_MHC_IP_R1	1	505.1607360839844	2	504.761092	1007.50763	-0.31979	-0.00016142	-0.40626	-0.00020506	-0.72605	-0.00036648	504.76089088264507	102.21	0.60577	102.21	102	102.61	0					17	11	2	0	0	0	0.4185	1	37596	37596		42.968	21.221	1	2054300			10770	3254	7574	7639	10521	10521					0.004177848974791232
EIDIRIRVPS	10	Unmodified	_EIDIRIRVPS_					0	0	0		ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	MSMS	A375_MHC_IP_R1	1	399.9312438964844	3	399.903183	1196.68772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.609	1	30.609	30.109	31.109	0								0	0	0	0.15136	1	9744	9744		13.519	3.7544	1				10771	9799	7575	7640	10522	10522					0.09724463834481867
EIDKEEHLY	9	Unmodified	_EIDKEEHLY_					0	0	0		ENST00000470594.5_1_X:51805328-51809606:-|nuORF;nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;ENST00000479281.5_1_X:51931784-51932886:+|nuORF;nc|ENSG00000187243|Q96JG8-4|MAGED4;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51640434-51640983:+|nuORF	ENST00000470594.5_1_X:51805328-51809606:-|nuORF;ENSG00000179222|ENST00000326587|MAGED1;ENST00000494718.5_1_X:51640434-51640983:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	A375_MHC_IP_R1	1	392.92431640625	3	392.524149	1174.55062	-0.35246	-0.00013835	0.56126	0.00022031	0.2088	8.1958E-05	392.5243043335003	29.404	0.25184	29.404	29.252	29.504	0					11	4	3	0	0	0	0.077132	1	9221	9221		41.956	29.083	1	8973100			10772	8215;12693;6095	7576	7641	10523	10523					-0.029674898357598067
EIDKEEHLY	9	Unmodified	_EIDKEEHLY_					0	0	0		ENST00000470594.5_1_X:51805328-51809606:-|nuORF;nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;ENST00000479281.5_1_X:51931784-51932886:+|nuORF;nc|ENSG00000187243|Q96JG8-4|MAGED4;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51640434-51640983:+|nuORF	ENST00000470594.5_1_X:51805328-51809606:-|nuORF;ENSG00000179222|ENST00000326587|MAGED1;ENST00000494718.5_1_X:51640434-51640983:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	A375_MHC_IP_R2	2	392.92376708984375	3	392.524149	1174.55062	-0.83265	-0.00032683	0.13885	5.4502E-05	-0.69379	-0.00027233	392.524163162936	28.73	0.25029	29.429	29.283	29.534	0.69872					7	4	2	0	0	0	0.040308	1	10002	10002		53.404	38.447	1	14593000			10773	8215;12693;6095	7576	7641	10524	10524					-0.029674898357598067
EIDKLQRAF	9	Unmodified	_EIDKLQRAF_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R2	2	374.2767639160156	3	373.876746	1118.60841	0.088248	3.2994E-05	-0.46058	-0.0001722	-0.37233	-0.0001392	373.87657036008983	51.86	0.6117	52.612	52.321	52.932	0.75225					14	8	2	0	0	0	0.58271	1	19553	19553		19.362	4.4048	1	2758400	+		10774	19932	7577	7642	10525	10525					0.05384816880314247
EIDKNDHLY	9	Unmodified	_EIDKNDHLY_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	A375_MHC_IP_R1	1	383.25238037109375	3	382.852377	1145.5353	0.00099077	3.7932E-07	-0.022797	-8.7279E-06	-0.021806	-8.3485E-06	382.85234061855715	26.694	0.80603	26.694	26.423	27.229	0					44	15	5	0	0	0	0.033557	1	7962	7962		65.474	26.859	1	87554000			10775	2373	7578	7643	10526	10526					-0.031643566329421446
EIDKNDHLY	9	Unmodified	_EIDKNDHLY_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	A375_MHC_IP_R1	1	574.1741943359375	2	573.774928	1145.5353	-0.53818	-0.00030879	-0.22565	-0.00012947	-0.76383	-0.00043826	573.7747544757531	26.685	0.60395	26.685	26.474	27.078	0					30	11	4	0	0	0	0.0061124	1	7971	7971		133.05	70.479	1	32936000			10776	2373	7578	7643	10527	10527					-0.031643566329421446
EIDKNDHLY	9	Unmodified	_EIDKNDHLY_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	A375_MHC_IP_R2	2	574.1749267578125	2	573.774928	1145.5353	-0.64905	-0.00037241	0.0036345	2.0854E-06	-0.64542	-0.00037032	573.7748893649521	26.121	0.55821	26.781	26.551	27.109	0.65992					28	10	4	0	0	0	0.0099737	1	8782	8782		96.367	50.667	1	36260000			10777	2373	7578	7643	10528	10528					-0.031643566329421446
EIDKNDHLY	9	Unmodified	_EIDKNDHLY_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-SECPEP	A375_MHC_IP_R2	2	383.2524719238281	3	382.852377	1145.5353	-0.51876	-0.00019861	0.32462	0.00012428	-0.19414	-7.4326E-05	382.85248698842224	26.121	0.66084	26.781	26.551	27.212	0.65992					45	12	5	0	0	0	0.3213	1	8778	8778		34.932	20.527	1	87158000			10778	2373	7578	7643	10529	10529					-0.031643566329421446
EIDKQQNYN	9	Unmodified	_EIDKQQNYN_					0	0	0			REV__nc|ENSG00000144674|Q13439-3|GOLGA4	REV__nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	A375_MHC_IP_R1	1	576.18505859375	2	576.27001	1150.52547	-0.12343	-7.1131E-05	1.8507	0.0010665	1.7273	0.00099538	576.270887476457	63.314	0.61504	63.314	63.069	63.684	0					16	11	2	0	0	0	0.38603	1	22789	22789		25.399	1.3787	1	1101000	+		10779	19439	7579	7644	10530	10530					-0.04377544638305153
EIDKQSSLY	9	Unmodified	_EIDKQSSLY_					0	0	0		nc|ENSG00000067445|Q12816-5|TRO;nc|ENSG00000067445|Q12816-2|TRO;nc|ENSG00000067445|Q12816-3|TRO;nc|ENSG00000067445|Q12816-4|TRO;ENSG00000067445|ENST00000173898|TRO;ENST00000492706.5_1_X:54951111-54953173:+|nuORF	nc|ENSG00000067445|Q12816-5|TRO	nc|ENSG00000067445|Q12816-5|TRO	MULTI-SECPEP	A375_MHC_IP_R1	1	542.15283203125	2	541.771854	1081.52915	-0.67623	-0.00036636	-1.2906	-0.00069921	-1.9668	-0.0010656	542.2720626903381	34.457	0.25423	34.457	34.353	34.608	0					7	4	2	0	0	0	0.33896	1	11366	11366		47.594	19.108	1	818520			10780	1438	7580	7645	10531	10531					-0.008348748644721127
EIDMNDIKAFY	11	Oxidation (M)	_EIDM(Oxidation (M))NDIKAFY_		EIDM(1)NDIKAFY		EIDM(120)NDIKAFY	0	0	1		ENSG00000135046|ENST00000257497|ANXA1;ENST00000491192.1_1_9:75783887-75785020:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	A375_MHC_IP_R1	1	688.21533203125	2	687.815935	1373.61732	-0.57114	-0.00039284	-0.52136	-0.0003586	-1.0925	-0.00075144	687.8153441065034	77.783	0.6125	77.783	77.486	78.099	0					28	11	3	0	0	0	0.00035842	1	28349	28349		115.06	85.219	1	5352200			10781	4636	7581	7646	10532	10532		242			-0.054546223361739976
EIDMNDIKAFY	11	Oxidation (M)	_EIDM(Oxidation (M))NDIKAFY_		EIDM(1)NDIKAFY		EIDM(110)NDIKAFY	0	0	1		ENSG00000135046|ENST00000257497|ANXA1;ENST00000491192.1_1_9:75783887-75785020:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	A375_MHC_IP_R2	2	688.2151489257812	2	687.815935	1373.61732	-0.67145	-0.00046183	-0.3416	-0.00023496	-1.013	-0.00069679	687.8154942743263	77.18	0.65881	77.923	77.607	78.265	0.74293					31	12	3	0	0	0	0.00090302	1	29316	29316		105.35	80.354	1	5334200			10782	4636	7581	7646	10533	10533		242			-0.054546223361739976
EIDMNDIKAFY	11	Unmodified	_EIDMNDIKAFY_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000491192.1_1_9:75783887-75785020:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-SECPEP	A375_MHC_IP_R2	2	680.2182006835938	2	679.818478	1357.6224	-0.5961	-0.00040524	0.14067	9.5632E-05	-0.45542	-0.00030961	679.8184666668407	103.99	0.71021	104.75	104.4	105.11	0.76373					39	13	4	0	0	0	0.0092858	1	39311	39311		121.5	79.664	1	8420400			10783	4636	7581	7647	10534	10534					-0.04210318473542429
EIDMRIKML	9	Unmodified	_EIDMRIKML_					0	0	0			REV__tr|U7SSB3|U7SSB3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01566PE=4SV=1	REV__tr|U7SSB3|U7SSB3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01566PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	383.94390869140625	3	383.543722	1147.60934	0.030753	1.1795E-05	0.81551	0.00031278	0.84626	0.00032458	383.5439636965657	25.942	0.50706	25.942	25.714	26.221	0					22	9	3	0	0	0	0.59098	1	7759	7759		15.739	3.5639	1	10165000	+		10784	28420	7582	7648	10535	10535					0.04143571933377643
EIDNKKYYKY	10	Unmodified	_EIDNKKYYKY_					0	0	0		nc|ENSG00000136104|Q5TBB1-2|RNASEH2B;ENST00000495244.6_1_13:51502574-51530607:+|nuORF;ENSG00000136104|ENST00000336617|RNASEH2B	nc|ENSG00000136104|Q5TBB1-2|RNASEH2B	nc|ENSG00000136104|Q5TBB1-2|RNASEH2B	MULTI-SECPEP	A375_MHC_IP_R1	1	455.98345947265625	3	455.234599	1362.68197	0.020804	9.4705E-06	2.5634	0.0011669	2.5842	0.0011764	455.5698753464621	21.58	0.40576	21.58	21.352	21.757	0					13	7	2	0	0	0	0.55923	1	5701	5701		46.022	25.151	1	2776700			10785	4750	7583	7649	10536	10536					0.015133205321490095
EIDNKKYYKY	10	Unmodified	_EIDNKKYYKY_					0	0	0		nc|ENSG00000136104|Q5TBB1-2|RNASEH2B;ENST00000495244.6_1_13:51502574-51530607:+|nuORF;ENSG00000136104|ENST00000336617|RNASEH2B	nc|ENSG00000136104|Q5TBB1-2|RNASEH2B	nc|ENSG00000136104|Q5TBB1-2|RNASEH2B	MULTI-SECPEP	A375_MHC_IP_R2	2	455.6487121582031	3	455.234599	1362.68197	-0.5211	-0.00023722	1.5615	0.00071084	1.0404	0.00047362	455.235193560419	20.049	0.55556	20.66	20.248	20.803	0.61029					15	10	2	0	0	0	0.68214	1	6180	6180		37.771	13.97	1	1372400			10786	4750	7583	7649	10537	10537					0.015133205321490095
EIDPWKRL	8	Unmodified	_EIDPWKRL_					0	0	0			REV__MSH3|p.L618W|1|0.3|ENSG00000113318|chr5:80761635-80761635|T/G|missense_variant	REV__MSH3|p.L618W|1|0.3|ENSG00000113318|chr5:80761635-80761635|T/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	352.94854736328125	3	352.86607	1055.57638	-0.15039	-5.3066E-05	-2.3834	-0.00084101	-2.5337	-0.00089407	352.86600558073013	40.902	0.75887	40.902	40.66	41.419	0					23	14	3	0	0	0	0.97144	1	14137	14137		3.5965	1.098	1	1574100	+		10787	27040	7584	7650	10538	10538					0.0508144919717779
EIDPWKRL	8	Unmodified	_EIDPWKRL_					0	0	0			REV__MSH3|p.L618W|1|0.3|ENSG00000113318|chr5:80761635-80761635|T/G|missense_variant	REV__MSH3|p.L618W|1|0.3|ENSG00000113318|chr5:80761635-80761635|T/G|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	352.86607	1055.57638	-0.27397	-9.6673E-05	-0.8526	-0.00030085	-1.1266	-0.00039753	353.19977253607715	39.977	0.30389	40.752	40.524	40.828	0.77451	-0.075174	0.0010353	NaN	1.4819	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1749000	+		10788	27040	7584	7650							0.0508144919717779
EIDQNFMKI	9	Unmodified	_EIDQNFMKI_					0	0	0			REV__ENST00000482953.5_1_21:42762449-42780157:+|nuORF	REV__ENST00000482953.5_1_21:42762449-42780157:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	379.1524658203125	3	379.858475	1136.5536	-0.20115	-7.6408E-05	1.4317	0.00054383	1.2305	0.00046742	379.85888318560194	41.211	0.40472	41.986	41.794	42.198	0.77451					13	7	3	0	0	0	0.78798	1	15355	15355		2.2828	0.43854	1	1552800	+		10789	21759	7585	7651	10539	10539					-0.009219379825935903
EIDTIKYIF	9	Unmodified	_EIDTIKYIF_					0	0	0		nc|ENSG00000172139|Q4G0N8-2|SLC9C1;ENSG00000172139|ENST00000305815|SLC9C1	nc|ENSG00000172139|Q4G0N8-2|SLC9C1	nc|ENSG00000172139|Q4G0N8-2|SLC9C1	MULTI-SECPEP	A375_MHC_IP_R2	2	571.709716796875	2	571.310615	1140.60668	-0.2626	-0.00015002	-0.21915	-0.0001252	-0.48175	-0.00027523	571.3104424725694	103.4	1.6274	104.17	103.74	105.36	0.76428					66	31	3	0	0	0	0.3213	1	39285	39285		46.021	6.0636	1	67434000			10790	7680	7586	7652	10540	10540					0.041997630717105494
EIEDEDQIL	9	Unmodified	_EIEDEDQIL_					0	0	0		FAN1|p.L916Tfs*77|1|0.02|ENSG00000198690|chr15:30929355-30929356|-/ACCCAGGCCCG|frameshift_variant;ENSG00000198690|ENST00000362065|FAN1;nc|ENSG00000198690|Q9Y2M0-2|FAN1	FAN1|p.L916Tfs*77|1|0.02|ENSG00000198690|chr15:30929355-30929356|-/ACCCAGGCCCG|frameshift_variant	FAN1|p.L916Tfs*77|1|0.02|ENSG00000198690|chr15:30929355-30929356|-/ACCCAGGCCCG|frameshift_variant	MSMS	A375_MHC_IP_R2	2	552.1975708007812	2	552.258776	1102.503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.518	1	89.25	88.75	89.75	0.7318								0	0	0	0.15486	1	33687	33687		11.64	0.81637	1				10791	9300	7587	7653	10541	10541					-0.044151888266014794
EIEDIIEEVTV	11	Unmodified	_EIEDIIEEVTV_					0	0	0		ENSG00000145703|ENST00000274364|IQGAP2;IQGAP2|p.K738Ifs*10|1|0.09|ENSG00000145703|chr5:76654234-76654244|AGAGCTATCTT/-|frameshift_variant	ENSG00000145703|ENST00000274364|IQGAP2	ENSG00000145703|ENST00000274364|IQGAP2	MULTI-MSMS	A375_MHC_IP_R1	1	430.6223449707031	3	430.222136	1287.64458	-0.16697	-7.1833E-05	0.84165	0.0003621	0.67468	0.00029026	430.2225253726267	57.949	0.5581	57.949	57.568	58.126	0					17	10	2	0	0	0	0.73439	1	20858	20858		4.7159	0.59929	1	4803400			10792	5571	7588	7654	10542	10542					0.0122618447583136
EIEDTFQQY	9	Unmodified	_EIEDTFQQY_					0	0	0		ENST00000520332.5_1_8:8869238-8946074:+|nuORF;ENSG00000104626|ENST00000250263|ERI1	ENST00000520332.5_1_8:8869238-8946074:+|nuORF	ENST00000520332.5_1_8:8869238-8946074:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	587.1586303710938	2	586.758943	1171.50333	-0.23487	-0.00013781	-0.11977	-7.0278E-05	-0.35465	-0.00020809	586.7587340317446	73.119	0.607	73.119	72.83	73.437	0					17	11	2	0	0	0	0.021422	1	26605	26605		108	46.64	1	2164200			10793	2522	7589	7655	10543	10543					-0.07555769106738808
EIEDTFQQY	9	Unmodified	_EIEDTFQQY_					0	0	0		ENST00000520332.5_1_8:8869238-8946074:+|nuORF;ENSG00000104626|ENST00000250263|ERI1	ENST00000520332.5_1_8:8869238-8946074:+|nuORF	ENST00000520332.5_1_8:8869238-8946074:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	587.15869140625	2	586.758943	1171.50333	-0.66209	-0.00038849	0.15493	9.0904E-05	-0.50716	-0.00029758	586.7589282551477	72.632	0.45779	73.367	73.073	73.53	0.73541					14	8	2	0	0	0	0.35487	1	27583	27583		43.858	24.601	1	2026000			10794	2522	7589	7655	10544	10544					-0.07555769106738808
EIEEERKTY	9	Unmodified	_EIEEERKTY_					0	0	0			REV__ENSG00000198887|ENST00000361138|SMC5	REV__ENSG00000198887|ENST00000361138|SMC5	MSMS	A375_MHC_IP_R2	2	599.16796875	2	598.793318	1195.57208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.7	1	97.456	96.956	97.956	0.75586								0	0	0	0.15486	1	36710	36710		10.074	0.6908	1		+		10795	22440	7590	7656	10545	10545					-0.017881048070194083
EIEHFVHI	8	Unmodified	_EIEHFVHI_					0	0	0		ENSG00000075673|ENST00000381946|ATP12A;nc|ENSG00000075673|P54707-2|ATP12A	ENSG00000075673|ENST00000381946|ATP12A	ENSG00000075673|ENST00000381946|ATP12A	MULTI-MSMS	A375_MHC_IP_R1	1	512.6768798828125	2	512.266542	1022.51853	-0.29875	-0.00015304	-0.14928	-7.6473E-05	-0.44803	-0.00022951	512.2664662060095	70.279	0.51094	70.279	69.983	70.494	0					15	9	2	0	0	0	0.72761	1	25462	25462		26.341	26.341	1	2587500			10796	1618	7591	7657	10546	10546					0.00817187271752573
EIEIFPLEVPI	11	Unmodified	_EIEIFPLEVPI_					0	0	0			REV__tr|U7SWX3|U7SWX3_FUSNUuroporphyrinogen-IIIC-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01206PE=4SV=1	REV__tr|U7SWX3|U7SWX3_FUSNUuroporphyrinogen-IIIC-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01206PE=4SV=1	MSMS	A375_MHC_IP_R2	2	649.7493286132812	2	649.865754	1297.71696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.93	1	129.17	128.67	129.67	0.23946								0	0	0	0.16249	1	50655	50655		5.7319	0	1		+		10797	28613	7592	7658	10547	10547					0.08000563340101507
EIEKIATEQT	10	Unmodified	_EIEKIATEQT_					0	0	0		tr|U7STY1|U7STY1_FUSNUCobyrinatea,c-diamidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiAPE=3SV=1	tr|U7STY1|U7STY1_FUSNUCobyrinatea,c-diamidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiAPE=3SV=1	tr|U7STY1|U7STY1_FUSNUCobyrinatea,c-diamidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	387.2803955078125	3	387.871438	1160.59248	-0.48964	-0.00018992	3.6027	0.0013974	3.1131	0.0012075	387.87302461130344	23.07	0.51127	23.7	23.265	23.777	0.63014					11	9	2	0	0	0	0.52461	1	7358	7358		24.882	1.0805	1	1604200			10798	29725	7593	7659	10548	10548					0.018610658527677515
EIEKKHHVI	9	Unmodified	_EIEKKHHVI_					0	0	0			REV__ENST00000497986.5_1_1:28562878-28564486:+|nuORF	REV__ENST00000497986.5_1_1:28562878-28564486:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	567.2447509765625	2	566.827298	1131.64004	-0.35642	-0.00020203	0.41934	0.00023769	0.062926	3.5668E-05	566.8272780227634	73.244	0.40726	73.98	73.785	74.192	0.73541					11	7	2	0	0	0	0.73363	1	27737	27737		10.824	2.2306	1	644280	+		10799	18564	7594	7660	10549	10549					0.0794880963428568
EIEKKPTSKQE	11	Unmodified	_EIEKKPTSKQE_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;ENSG00000152818|ENST00000367545|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	MSMS	A375_MHC_IP_R1	1	658.8419189453125	2	658.856449	1315.69835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.93	1	117.93	117.43	118.43	0								0	0	0	0.15183	1	43356	43356		19.362	3.2128	1				10800	5986	7595	7661	10550	10550					0.05312401698256508
EIEKLGQKY	9	Unmodified	_EIEKLGQKY_					0	0	0		ENSG00000119616|ENST00000341162|FCF1	ENSG00000119616|ENST00000341162|FCF1	ENSG00000119616|ENST00000341162|FCF1	MULTI-SECPEP	A375_MHC_IP_R1	1	369.4447326660156	3	369.873001	1106.59717	0.24539	9.0764E-05	-0.044619	-1.6503E-05	0.20077	7.4261E-05	369.8729516980973	25.434	0.35733	25.434	25.306	25.664	0					12	6	2	0	0	0	0.78798	1	7458	7458		0.18151	0.022186	1	3605600			10801	3605	7596	7662	10551	10551					0.04813994786218245
EIEKLGQKY	9	Unmodified	_EIEKLGQKY_					0	0	0		ENSG00000119616|ENST00000341162|FCF1	ENSG00000119616|ENST00000341162|FCF1	ENSG00000119616|ENST00000341162|FCF1	MULTI-SECPEP	A375_MHC_IP_R2	2	369.6287841796875	3	369.873001	1106.59717	-0.095719	-3.5404E-05	-0.21243	-7.8573E-05	-0.30815	-0.00011398	369.8727783570533	24.796	0.66101	25.439	25.263	25.924	0.64368					19	12	2	0	0	0	0.76187	1	8235	8235		7.609	3.4194	1	3423300			10802	3605	7596	7662	10552	10552					0.04813994786218245
EIEKLKDRK	9	Unmodified	_EIEKLKDRK_					0	0	0			REV__nc|ENSG00000198399|Q9NZM3-4|ITSN2	REV__nc|ENSG00000198399|Q9NZM3-4|ITSN2	MULTI-MSMS	A375_MHC_IP_R2	2	387.2803955078125	3	386.89955	1157.67682	-0.48255	-0.0001867	1.7001	0.00065776	1.2175	0.00047106	386.90014039282727	23.019	0.3062	23.649	23.42	23.726	0.63014					8	5	2	0	0	0	0.2415	1	7358	7358		34.932	17.883	1	1280300	+		10803	22367	7597	7663	10553	10553					0.10429061460172306
EIEKYCMERP	10	Unmodified	_EIEKYCMERP_					0	0	0		PRPF6|p.R132C|1|0.41|ENSG00000101161|chr20:63993441-63993441|C/T|missense_variant	PRPF6|p.R132C|1|0.41|ENSG00000101161|chr20:63993441-63993441|C/T|missense_variant	PRPF6|p.R132C|1|0.41|ENSG00000101161|chr20:63993441-63993441|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	649.6989135742188	2	649.299398	1296.58424	-0.55954	-0.00036331	-0.79982	-0.00051933	-1.3594	-0.00088263	649.298730865172	46.588	0.66123	47.353	47.058	47.719	0.76518					26	12	4	0	0	0	0.42311	1	17439	17439		32.786	2.9451	1	5108000			10804	15234	7598	7664	10554	10554					-0.05218527659872052
EIEKYCMERP	10	Unmodified	_EIEKYCMERP_					0	0	0		PRPF6|p.R132C|1|0.41|ENSG00000101161|chr20:63993441-63993441|C/T|missense_variant	PRPF6|p.R132C|1|0.41|ENSG00000101161|chr20:63993441-63993441|C/T|missense_variant	PRPF6|p.R132C|1|0.41|ENSG00000101161|chr20:63993441-63993441|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	649.299398	1296.58424	-0.55954	-0.00036331	-0.79982	-0.00051933	-1.3594	-0.00088263	649.298730865172	46.588	0.66123	47.353	47.058	47.719	0.76518	0.099998	3.5069E-05	NaN	32.786	26	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5108000			10805	15234	7598	7664							-0.05218527659872052
EIENDDSEF	9	Unmodified	_EIENDDSEF_					0	0	0		ENST00000598312.5_1_19:58640838-58653946:-|nuORF;ENST00000601887.1_1_19:58640838-58666346:-|nuORF	ENST00000598312.5_1_19:58640838-58653946:-|nuORF	ENST00000598312.5_1_19:58640838-58653946:-|nuORF	MSMS	A375_MHC_IP_R2	2	549.1758422851562	2	549.217108	1096.41966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.184	1	74.922	74.422	75.422	0.73752								0	0	0	0.15486	1	28157	28157		4.756	0	1				10806	13851	7599	7665	10555	10555					-0.12468925274470166
EIERIRQW	8	Unmodified	_EIERIRQW_					0	0	0			REV__CLMP|p.K172I|1|0.64|ENSG00000166250|chr11:123083721-123083721|T/A|missense_variant	REV__CLMP|p.K172I|1|0.64|ENSG00000166250|chr11:123083721-123083721|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	565.7088012695312	2	565.309272	1128.60399	-0.36377	-0.00020564	-0.34825	-0.00019687	-0.71202	-0.00040251	565.3090397678561	57.303	0.50949	57.303	57.059	57.568	0					13	9	2	0	0	0	0.9187	1	20603	20603		13.906	0	1	2214500	+		10807	15801	7600	7666	10556	10556					0.04483352457418732
EIESTFHMY	9	Unmodified	_EIESTFHMY_					0	0	0		ENSG00000117419|ENST00000372257|ERI3;nc|ENSG00000117419|O43414-2|ERI3	ENSG00000117419|ENST00000372257|ERI3	ENSG00000117419|ENST00000372257|ERI3	MULTI-MSMS	A375_MHC_IP_R2	2	579.2030029296875	2	578.752607	1155.49066	-0.15047	-8.7082E-05	0.040096	2.3206E-05	-0.11037	-6.3876E-05	578.7527608545383	67.9	0.4073	68.636	68.409	68.816	0.73511					10	7	2	0	0	0	0.13491	2	25718	25711;25718		44.407	25.15	1	1879100			10808	3483	7601	7667	10557;10558	10558					-0.08086503770618947
EIETTQNY	8	Unmodified	_EIETTQNY_					0	0	0		ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	MULTI-MSMS	A375_MHC_IP_R1	1	499.6268005371094	2	499.227279	996.440005	-0.56515	-0.00028214	0.19712	9.8407E-05	-0.36803	-0.00018373	499.2273267180554	66.267	1.0182	66.267	65.972	66.99	0					28	19	2	0	0	0	0.7256	1	23989	23989		26.884	1.4843	1	3069400			10809	6155	7602	7668	10559	10559					-0.05835709823998059
EIETVKQLH	9	Unmodified	_EIETVKQLH_					0	0	0		ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	MULTI-SECPEP	A375_MHC_IP_R2	2	548.1950073242188	2	548.803488	1095.59242	-0.89358	-0.0004904	1.1464	0.00062916	0.25285	0.00013876	548.8037240985932	27.016	0.86859	27.687	27.425	28.293	0.6708					28	16	3	0	0	0	0.63327	1	9136	9136		18.146	7.3224	1	4401200			10810	4957	7603	7669	10560	10560					0.04845110643418593
EIEWRGDYIS	10	Unmodified	_EIEWRGDYIS_					0	0	0			REV__ENSG00000153132|ENST00000325617|CLGN	REV__ENSG00000153132|ENST00000325617|CLGN	MULTI-SECPEP	A375_MHC_IP_R1	1	422.9925537109375	3	423.203299	1266.58807	-0.042262	-1.7885E-05	-0.11655	-4.9324E-05	-0.15881	-6.7209E-05	423.203125883166	57.568	0.45788	57.568	57.364	57.822	0					13	8	2	0	0	0	0.94421	1	20579	20579		0.13989	0.13989	1	801190	+		10811	19828	7604	7670	10561	10561					-0.034563985701424826
EIFGVDFDY	9	Unmodified	_EIFGVDFDY_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1795043945312	2	552.747847	1103.48114	-0.87915	-0.00048595	0.44581	0.00024642	-0.43334	-0.00023953	552.7481747811946	44.973	1.0168	45.742	44.985	46.001	0.7691					28	19	2	0	0	0	0.74169	1	16892	16892		16.942	16.942	1	4454500			10812	2857	7605	7671	10562	10562					-0.06645948784534994
EIFKERIEN	9	Unmodified	_EIFKERIEN_					0	0	0			REV__tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1	REV__tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	589.2338256835938	2	589.31422	1176.61389	-0.54496	-0.00032115	-0.77882	-0.00045897	-1.3238	-0.00078012	589.3145888297787	67.546	0.25563	68.282	68.104	68.359	0.73631					5	4	2	0	0	0	0.27114	1	25603	25603		45.74	10.808	1	810600	+		10813	28528	7606	7672	10563	10563					0.0326449567214695
EIFNAKSRYY	10	Unmodified	_EIFNAKSRYY_					0	0	0		tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	MSMS	A375_MHC_IP_R1	1	430.9253234863281	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.953	1	46.953	46.453	47.453	0								0	0	0	0.15435	1	16498	16498		3.5871	0.23133	1				10814	29975	7607	7673	10564	10564					0.007201845634881465
EIFTDNKTYVF	11	Unmodified	_EIFTDNKTYVF_					0	0	0		nc|ENSG00000197415|Q14D04-2|VEPH1;ENSG00000197415|ENST00000362010|VEPH1	nc|ENSG00000197415|Q14D04-2|VEPH1	nc|ENSG00000197415|Q14D04-2|VEPH1	MULTI-SECPEP	A375_MHC_IP_R1	1	458.99249267578125	3	459.562604	1375.66598	-0.29158	-0.000134	0.16408	7.5406E-05	-0.1275	-5.8592E-05	459.56257894499265	58.278	0.30396	58.278	58.126	58.43	0					6	5	2	0	0	0	0.99945	1	20911	20911		1.0136	0	1	656880			10815	9154	7608	7674	10565	10565					-0.006823857047720594
EIFWTWSPLWY	11	Unmodified	_EIFWTWSPLWY_					0	0	0			REV__ENST00000399151.3_1_21:37642452-37650333:+|nuORF	REV__ENST00000399151.3_1_21:37642452-37650333:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	509.6565856933594	3	509.915089	1526.72344	-0.67579	-0.0003446	4.1884	0.0021357	3.5126	0.0017911	509.9163765245556	42.714	0.3044	43.486	43.369	43.674	0.7724					9	5	2	0	0	0	1.0004	1	15864	15864		0.40827	0	1	745090	+		10816	24388	7609	7675	10566	10566					-0.01885498708520572
EIFYDQYSKPG	11	Unmodified	_EIFYDQYSKPG_					0	0	0		nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	nc|ENSG00000189056|P78509-3|RELN	nc|ENSG00000189056|P78509-3|RELN	MULTI-MSMS	A375_MHC_IP_R2	2	674.2160034179688	2	673.816793	1345.61903	-0.54374	-0.00036638	-0.022152	-1.4926E-05	-0.56589	-0.00038131	673.8168738987214	85.854	0.50974	86.589	86.44	86.949	0.73475					16	9	2	0	0	0	0.65093	1	32692	32692		19.362	3.2128	1	3363400			10817	8956	7610	7676	10567	10567					-0.039952452559418816
EIFYDQYSKPG	11	Unmodified	_EIFYDQYSKPG_					0	0	0		nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	nc|ENSG00000189056|P78509-3|RELN	nc|ENSG00000189056|P78509-3|RELN	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	673.816793	1345.61903	-0.54374	-0.00036638	-0.022152	-1.4926E-05	-0.56589	-0.00038131	673.8168738987214	85.854	0.50974	86.589	86.44	86.949	0.73475	0.043601	-0.00024766	NaN	19.362	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3363400			10818	8956	7610	7676							-0.039952452559418816
EIGEQQLDF	9	Unmodified	_EIGEQQLDF_					0	0	0		nc|ENSG00000181827|Q2KHR2-1|RFX7;nc|ENSG00000181827|Q2KHR2-2|RFX7;ENSG00000181827|ENST00000559447|RFX7	nc|ENSG00000181827|Q2KHR2-1|RFX7	nc|ENSG00000181827|Q2KHR2-1|RFX7	MSMS	A375_MHC_IP_R2	2	539.7035522460938	2	539.756204	1077.49785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.97	1	102.73	102.23	103.23	0.76428								0	0	0	0.15486	1	38646	38646		11.64	0	1				10819	8365	7611	7677	10568	10568					-0.0377944789859157
EIGKRAGV	8	Unmodified	_EIGKRAGV_					0	0	0		ENST00000562919.1_1_4:113152035-113152410:-|nuORF	ENST00000562919.1_1_4:113152035-113152410:-|nuORF	ENST00000562919.1_1_4:113152035-113152410:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	415.5811462402344	2	415.248152	828.481751	-0.42687	-0.00017726	-0.13057	-5.4218E-05	-0.55744	-0.00023148	415.24789236355383	24.92	0.20398	25.563	25.465	25.668	0.64368					6	3	2	0	0	0	0.94479	1	8246	8246		13.508	0	1	1522600			10820	13518	7612	7678	10569	10569					0.060649354458519156
EIGLDLENSF	10	Unmodified	_EIGLDLENSF_					0	0	0		SLFN12|p.G74E|1|0.39|ENSG00000172123|chr17:35422808-35422808|C/T|missense_variant	SLFN12|p.G74E|1|0.39|ENSG00000172123|chr17:35422808-35422808|C/T|missense_variant	SLFN12|p.G74E|1|0.39|ENSG00000172123|chr17:35422808-35422808|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	568.7303466796875	2	568.777136	1135.53972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.075	1	57.075	56.575	57.575	0								0	0	0	0.1524	1	20463	20463		13.042	0.80181	1				10821	29203	7613	7679	10570	10570					-0.022628922100466298
EIGPIFEVKY	10	Unmodified	_EIGPIFEVKY_					0	0	0		tr|U7T5C1|U7T5C1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00011PE=4SV=1	tr|U7T5C1|U7T5C1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00011PE=4SV=1	tr|U7T5C1|U7T5C1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00011PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	399.2849426269531	3	398.885018	1193.63323	-0.88421	-0.0003527	0.50669	0.00020211	-0.37752	-0.00015059	398.8852187532192	29.005	0.29609	29.704	29.584	29.88	0.69872					7	5	2	0	0	0	0.93733	1	10129	10129		5.4027	2.0831	1	5121500			10822	30018	7614	7680	10571	10571					0.04415451963063788
EIGTKQSF	8	Unmodified	_EIGTKQSF_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	A375_MHC_IP_R1	1	455.63751220703125	2	455.23745	908.460347	-0.16609	-7.5609E-05	0.00043176	1.9655E-07	-0.16565	-7.5412E-05	455.2374473398234	28.617	0.5048	28.617	28.44	28.945	0					14	9	2	0	0	0	0.42086	1	8886	8886		52.268	10.174	1	3506100			10823	2388	7615	7681	10572	10572					0.0024550562648073537
EIGWAMLAY	9	Unmodified	_EIGWAMLAY_					0	0	0			REV__MMP25|p.M151I|1|0.36|ENSG00000008516|chr16:3050338-3050338|G/A|missense_variant	REV__MMP25|p.M151I|1|0.36|ENSG00000008516|chr16:3050338-3050338|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	527.2079467773438	2	527.257328	1052.5001	-0.50599	-0.00026679	-2.9897	-0.0015763	-3.4957	-0.0018431	527.2553934250617	74.175	0.40546	74.175	74.045	74.451	0					11	7	2	0	0	0	0.58047	1	27015	27015		15.847	1.2655	1	717370	+		10824	27026	7616	7682	10573	10573					-0.02404690694470446
EIHKEKRPM	9	Unmodified	_EIHKEKRPM_					0	0	0			REV__ENSG00000124251|ENST00000372726|TP53TG5	REV__ENSG00000124251|ENST00000372726|TP53TG5	MULTI-SECPEP	A375_MHC_IP_R1	1	389.955810546875	3	389.881614	1166.62301	-0.14713	-5.7365E-05	-1.3722	-0.00053501	-1.5194	-0.00059238	389.8810118545694	26.601	1.1119	26.601	25.816	26.928	0					28	21	2	0	0	0	0.67483	1	8014	8014		10.151	0	1	3218400	+		10825	18291	7617	7683	10574	10574					0.046365657568230745
EIHKVPVVR	9	Unmodified	_EIHKVPVVR_					0	0	0		ENST00000602564.5_1_16:718481-718747:+|nuORF;ENST00000569706.5_1_16:718312-718747:+|nuORF	ENST00000602564.5_1_16:718481-718747:+|nuORF	ENST00000602564.5_1_16:718481-718747:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	359.28155517578125	3	359.557348	1075.65021	-0.3637	-0.00013077	1.4878	0.00053494	1.1241	0.00040417	359.55750309307837	29.328	0.20186	29.328	29.201	29.403	0					6	3	2	0	0	0	0.56537	1	9167	9167		21.59	0	1	1877700			10826	13593	7618	7684	10575	10575					0.11541417359512707
EIHWWRVQDRN	11	Unmodified	_EIHWWRVQDRN_					0	0	0		ENSG00000113263|ENST00000422843|ITK;ENST00000519402.5_1_5:156607865-156667213:+|nuORF	ENSG00000113263|ENST00000422843|ITK	ENSG00000113263|ENST00000422843|ITK	MSMS	A375_MHC_IP_R2	2	769.7943115234375	2	769.884198	1537.75384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.06	1	124.39	123.89	124.89	0.32969								0	0	0	0.16232	1	47861	47861		6.6304	2.686	1				10827	3135	7619	7685	10576	10576					0.006476727292238138
EIIDKDPVNL	10	Unmodified	_EIIDKDPVNL_					0	0	0			REV__tr|U7SNU9|U7SNU9_FUSNUAdenylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=adkPE=3SV=1	REV__tr|U7SNU9|U7SNU9_FUSNUAdenylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=adkPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	578.7161865234375	2	578.316428	1154.6183	-0.20751	-0.00012	1.042	0.00060258	0.83445	0.00048258	578.3170609743763	76.889	0.50397	77.632	77.404	77.908	0.74293					15	9	2	0	0	0	0.92445	1	29216	29216		11.495	0	1	2427200	+		10828	28343	7620	7686	10577	10577					0.047179600950585154
EIIEEEFTE	9	Unmodified	_EIIEEEFTE_					0	0	0		tr|U7SV10|U7SV10_FUSNUMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferaseTrmFOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmFOPE=3SV=1	tr|U7SV10|U7SV10_FUSNUMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferaseTrmFOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmFOPE=3SV=1	tr|U7SV10|U7SV10_FUSNUMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferaseTrmFOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmFOPE=3SV=1	MSMS	A375_MHC_IP_R1	1	569.6928100585938	2	569.761152	1137.50775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.075	1	59.075	58.575	59.575	0								0	0	0	0.1499	1	21238	21238		21.747	2.4897	1				10829	29782	7621	7687	10578	10578					-0.05550304683856666
EIIEISIKW	9	Unmodified	_EIIEISIKW_					0	0	0		L1ME1_dup14741|chr8:25510836-25512219:-|1.0165124893605175|0.2188578600898351|2.22|472.0|38|2|sense	L1ME1_dup14741|chr8:25510836-25512219:-|1.0165124893605175|0.2188578600898351|2.22|472.0|38|2|sense	L1ME1_dup14741|chr8:25510836-25512219:-|1.0165124893605175|0.2188578600898351|2.22|472.0|38|2|sense	MULTI-SECPEP	A375_MHC_IP_R1	1	378.276611328125	3	377.55338	1129.63831	-0.045006	-1.6992E-05	0.52041	0.00019648	0.4754	0.00017949	377.55364442615445	41.468	0.55984	41.468	41.114	41.674	0					17	10	2	0	0	0	0.67483	1	14374	14374		14.405	0	1	2690300			10830	14263	7622	7688	10579	10579					0.07867755825691347
EIIEVRKPL	9	Unmodified	_EIIEVRKPL_					0	0	0			REV__nc|ENSG00000141298|Q76I76|SSH2	REV__nc|ENSG00000141298|Q76I76|SSH2	MULTI-MSMS	A375_MHC_IP_R2	2	366.62884521484375	3	366.229008	1095.66519	-0.17236	-6.3124E-05	0.43964	0.00016101	0.26728	9.7884E-05	366.2290693914353	49.393	0.60645	50.151	49.741	50.348	0.75737					15	11	2	0	0	0	0.13845	1	18541	18541		43.772	12.504	1	2666500	+		10831	19254	7623	7689	10580	10580					0.12118864436843069
EIIEVRKPL	9	Unmodified	_EIIEVRKPL_					0	0	0			REV__nc|ENSG00000141298|Q76I76|SSH2	REV__nc|ENSG00000141298|Q76I76|SSH2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	366.229008	1095.66519	0.24947	9.1363E-05	-0.052815	-1.9342E-05	0.19665	7.2021E-05	366.2289411040749	50.219	0.46068	50.219	49.998	50.459	0	0.034324	-0.00032827	NaN	43.772	21	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2833700	+		10832	19254	7623	7689							0.12118864436843069
EIIFGKYCR	9	Unmodified	_EIIFGKYCR_					0	0	0		ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	MULTI-MSMS	A375_MHC_IP_R1	1	377.2679138183594	3	376.867193	1127.57975	0.46409	0.0001749	0.80175	0.00030215	1.2658	0.00047705	376.86782816246097	35.964	0.66284	35.964	35.573	36.236	0					21	12	2	0	0	0	0.68705	1	12034	12034		8.1555	0.54658	1	1996600			10833	987	7624	7690	10581	10581					0.021063759795197257
EIIHMLEY	8	Unmodified	_EIIHMLEY_					0	0	0		nc|ENSG00000164074|Q0P651-4|ABHD18;nc|ENSG00000164074|Q0P651-3|ABHD18;ENST00000473040.6_1_4:128905516-128956965:+|nuORF;ENSG00000164074|ENST00000645843|ABHD18	nc|ENSG00000164074|Q0P651-4|ABHD18	nc|ENSG00000164074|Q0P651-4|ABHD18	MSMS	A375_MHC_IP_R1	1	524.1605834960938	2	524.26261	1046.51067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.728	1	71.728	71.228	72.228	0								0	0	0	0.16876	1	26074	26074		14.582	0	1				10834	6771	7625	7691	10582	10582					-0.010727080400329214
EIIIERHKDTR	11	Unmodified	_EIIIERHKDTR_					0	0	0			REV__SLC8A3|p.G272E|1|0.48|ENSG00000100678|chr14:70167608-70167608|C/T|missense_variant	REV__SLC8A3|p.G272E|1|0.48|ENSG00000100678|chr14:70167608-70167608|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	705.1976318359375	2	705.396607	1408.77866	-0.65754	-0.00046383	-1.4734	-0.0010393	-2.131	-0.0015032	705.3954952770621	88.432	0.3547	89.164	89.026	89.381	0.7318					12	6	2	0	0	0	0.73459	1	33619	33619		4.5289	1.2476	1	2153700	+		10835	28006	7626	7692	10583	10583					0.09062307811927894
EIIKFKEEIS	10	Unmodified	_EIIKFKEEIS_					0	0	0			REV__ENST00000430436.5_2_20:20486175-20493168:-|nuORF	REV__ENST00000430436.5_2_20:20486175-20493168:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	618.7456665039062	2	618.347729	1234.6809	-0.57058	-0.00035282	-1.6791	-0.0010383	-2.2497	-0.0013911	618.3467047346451	129.72	1.0666	129.72	129.25	130.31	0					39	20	3	0	0	0	0.69833	1	49980	49980		13.042	4.8869	1	16573000	+		10836	24693	7627	7693	10584	10584					0.07295106163246601
EIIKSVYSKSV	11	Unmodified	_EIIKSVYSKSV_					0	0	0			REV__tr|U7SF52|U7SF52_FUSNUCompetenceproteinComEAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02334PE=4SV=1	REV__tr|U7SF52|U7SF52_FUSNUCompetenceproteinComEAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02334PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	418.2738952636719	3	418.243094	1251.70745	0.050973	2.1319E-05	0.38868	0.00016256	0.43965	0.00018388	418.2432478533747	65.386	1.4734	65.386	64.954	66.428	0					47	28	2	0	0	0	0.72909	1	23838	23838		9.7643	2.2872	1	2646800	+		10837	28166	7628	7694	10585	10585					0.09166795054557042
EIIKSVYSKSV	11	Unmodified	_EIIKSVYSKSV_					0	0	0			REV__tr|U7SF52|U7SF52_FUSNUCompetenceproteinComEAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02334PE=4SV=1	REV__tr|U7SF52|U7SF52_FUSNUCompetenceproteinComEAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02334PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	418.2738952636719	3	418.243094	1251.70745	0.050973	2.1319E-05	0.38868	0.00016256	0.43965	0.00018388	418.2432478533747	65.386	1.4734	65.386	64.954	66.428	0					47	28	2	0	0	0	0.98968	1	23838	23838		9.7643	5.0483	1	2646800	+		10838	28166	7628	7694	10586	10586					0.09166795054557042
EIIKTLNSLT	10	Unmodified	_EIIKTLNSLT_					0	0	0		nc|ENSG00000113520|P05112-2|IL4;ENSG00000113520|ENST00000231449|IL4	nc|ENSG00000113520|P05112-2|IL4	nc|ENSG00000113520|P05112-2|IL4	MULTI-SECPEP	A375_MHC_IP_R2	2	377.9730529785156	3	377.892173	1130.65469	0.13411	5.0678E-05	-0.18035	-6.8154E-05	-0.046247	-1.7476E-05	377.892001696288	44.444	0.76161	45.214	44.833	45.594	0.7691					28	14	3	0	0	0	0.91442	1	16681	16681		14.218	2.7003	1	8076700			10839	3157	7629	7695	10587	10587					0.09458836991734643
EIILFFFFFFF	11	Unmodified	_EIILFFFFFFF_					0	0	0			REV__AluSg_dup15702|chr8:11842937-11843245:-|1.3969872273987374|0.0428345925871658|5.03|472.0|12|1|anti-sense	REV__AluSg_dup15702|chr8:11842937-11843245:-|1.3969872273987374|0.0428345925871658|5.03|472.0|12|1|anti-sense	MULTI-MSMS	A375_MHC_IP_R2	2	506.99090576171875	3	506.268692	1515.78425	-0.81064	-0.0004104	1.6411	0.00083085	0.83049	0.00042045	506.26968177934003	40.482	0.55856	41.256	40.879	41.438	0.77451					17	10	3	0	0	0	0.73795	1	14902	14902		1.3296	0.11481	1	1918100	+		10840	15371	7630	7696	10588	10588					0.046986383416651734
EIINKIDKL	9	Unmodified	_EIINKIDKL_					0	0	0		tr|U7ST83|U7ST83_FUSNU23SrRNA(-2'-O)/16SrRNA(-2'-O)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01257PE=3SV=1	tr|U7ST83|U7ST83_FUSNU23SrRNA(-2'-O)/16SrRNA(-2'-O)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01257PE=3SV=1	tr|U7ST83|U7ST83_FUSNU23SrRNA(-2'-O)/16SrRNA(-2'-O)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01257PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	543.6448364257812	2	543.331882	1084.64921	-0.51175	-0.00027805	0.36248	0.00019695	-0.14927	-8.1102E-05	543.8320770608681	97.797	1.2211	97.797	97.49	98.711	0					71	23	5	0	0	0	0.23313	1	35923	35923		71.922	28.064	1	26105000			10841	29665	7631	7697	10589	10589					0.11027158199931364
EIIRCLKAF	9	Unmodified	_EIIRCLKAF_					0	0	0		ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	MULTI-MSMS	A375_MHC_IP_R1	1	364.92333984375	3	364.879322	1091.61614	0.11996	4.377E-05	-1.5215	-0.00055515	-1.4015	-0.00051138	364.87908061761874	36.108	0.71142	36.108	35.932	36.644	0					19	13	2	0	0	0	0.68705	1	12120	12120		8.1555	0.54658	1	3581000			10842	4337	7632	7698	10590	10590					0.07399252876234641
EIIYDARTV	9	Unmodified	_EIIYDARTV_					0	0	0		nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	MULTI-SECPEP	A375_MHC_IP_R2	2	540.6862182617188	2	540.290214	1078.56587	-0.84987	-0.00045918	-1.3724	-0.0007415	-2.2223	-0.0012007	540.2894558554084	82.811	0.95891	83.554	83.042	84.001	0.74293					49	18	4	0	0	0	0.3213	1	31354	31354		46.021	0.32134	1	15544000			10843	14849	7633	7699	10591	10591					0.029734217520854145
EIKDVKKLKKK	11	Unmodified	_EIKDVKKLKKK_					0	0	0			REV__ENSG00000015479|ENST00000394805|MATR3	REV__ENSG00000015479|ENST00000394805|MATR3	MSMS	A375_MHC_IP_R1	1	679.1131591796875	2	678.950487	1355.88642	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.986	1	99.986	99.486	100.49	0								0	0	0	0.16316	1	36740	36740		2.2828	1.9321	1		+		10844	16246	7634	7700	10592	10592					0.22271304413288817
EIKEFIKLK	9	Unmodified	_EIKEFIKLK_					0	0	0			REV__ZNF165|p.E197K|1|0.14|ENSG00000197279|chr6:28088601-28088601|G/A|missense_variant	REV__ZNF165|p.E197K|1|0.14|ENSG00000197279|chr6:28088601-28088601|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	383.6408386230469	3	383.241025	1146.70125	0.25115	9.6251E-05	0.057581	2.2067E-05	0.30873	0.00011832	383.24095333056624	52.48	0.45675	52.48	52.237	52.694	0					23	8	4	0	0	0	0.0099672	1	18660	18660		121.5	23.762	1	6435100	+		10845	29026	7635	7701	10593	10593					0.1337632161369129
EIKEFIKLK	9	Unmodified	_EIKEFIKLK_					0	0	0			REV__ZNF165|p.E197K|1|0.14|ENSG00000197279|chr6:28088601-28088601|G/A|missense_variant	REV__ZNF165|p.E197K|1|0.14|ENSG00000197279|chr6:28088601-28088601|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	383.241025	1146.70125	0.25115	9.6251E-05	0.057581	2.2067E-05	0.30873	0.00011832	383.24095333056624	52.48	0.45675	52.48	52.237	52.694	0	0.099358	-1.4475E-05	NaN	121.5	23	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6435100	+		10846	29026	7635	7701							0.1337632161369129
EIKEHGDFY	9	Unmodified	_EIKEHGDFY_					0	0	0		MMP13|p.G168E|1|0.24|ENSG00000137745|chr11:102954466-102954466|C/T|missense_variant	MMP13|p.G168E|1|0.24|ENSG00000137745|chr11:102954466-102954466|C/T|missense_variant	MMP13|p.G168E|1|0.24|ENSG00000137745|chr11:102954466-102954466|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	379.6157531738281	3	379.845223	1136.51384	0.0066589	2.5294E-06	0.57329	0.00021776	0.57994	0.00022029	379.8454442391651	32.426	0.25561	33.163	33.061	33.317	0.73692					6	4	2	0	0	0	0.76187	1	11509	11509		7.609	3.0801	1	1180500			10847	14390	7636	7702	10594	10594					-0.04895741661653119
EIKELQIKL	9	Unmodified	_EIKELQIKL_					0	0	0		CCDC136|p.T927I|1|0.27|ENSG00000128596|chr7:128814654-128814654|C/T|missense_variant	CCDC136|p.T927I|1|0.27|ENSG00000128596|chr7:128814654-128814654|C/T|missense_variant	CCDC136|p.T927I|1|0.27|ENSG00000128596|chr7:128814654-128814654|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	372.3009338378906	3	371.90078	1112.68051	0.51193	0.00019039	0.35658	0.00013261	0.86851	0.000323	371.90059544198203	63.781	1.1173	64.521	63.682	64.8	0.74022					35	21	3	0	0	0	0.62767	1	24153	24153		11.495	0	1	4649000			10848	304	7637	7703	10595	10595					0.12867731234041457
EIKFIYKNE	9	Unmodified	_EIKFIYKNE_					0	0	0			REV__tr|U7T130|U7T130_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00875PE=4SV=1	REV__tr|U7T130|U7T130_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00875PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	395.97607421875	3	395.216768	1182.62847	-0.1818	-7.185E-05	0.75668	0.00029905	0.57488	0.0002272	395.2172039940158	19.307	0.48709	19.307	19.238	19.725	0					14	9	2	0	0	0	0.656	1	4697	4697		10.899	0	1	6846800	+		10849	28691	7638	7704	10596	10596					0.044465678203096104
EIKHKYLWSEP	11	Unmodified	_EIKHKYLWSEP_					0	0	0		ENST00000528191.5_1_15:79224365-79229419:-|nuORF;ENST00000533777.5_1_15:79224365-79230096:-|nuORF;ENST00000534038.5_1_15:79224365-79237386:-|nuORF;ENSG00000103811|ENST00000220166|CTSH	ENST00000528191.5_1_15:79224365-79229419:-|nuORF	ENST00000528191.5_1_15:79224365-79229419:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	358.3418273925781	4	358.192314	1428.74015	-0.1044	-3.7394E-05	0.50761	0.00018182	0.40322	0.00014443	358.1924519475072	53.074	0.45474	53.074	52.744	53.199	0					11	8	2	0	0	0	0.7342	1	18903	18903		2.2527	1.0379	1	2167000			10850	2470	7639	7705	10597	10597					0.04293002177428207
EIKHWRKMLWR	11	Unmodified	_EIKHWRKMLWR_					0	0	0		ENSG00000141371|ENST00000269127|CHCT1	ENSG00000141371|ENST00000269127|CHCT1	ENSG00000141371|ENST00000269127|CHCT1	MSMS	A375_MHC_IP_R1	1	792.0996704101562	2	791.943005	1581.87146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.827	1	96.827	96.327	97.327	0								0	0	0	0.16353	1	35581	35581		0.35063	0.35063	1				10851	5231	7640	7706	10598	10598					0.10379534064327345
EIKHYFQKGIM	11	Unmodified	_EIKHYFQKGIM_					0	0	0		tr|U7T3B2|U7T3B2_FUSNUCob(I)yrinicacida,c-diamideadenosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00336PE=4SV=1	tr|U7T3B2|U7T3B2_FUSNUCob(I)yrinicacida,c-diamideadenosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00336PE=4SV=1	tr|U7T3B2|U7T3B2_FUSNUCob(I)yrinicacida,c-diamideadenosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00336PE=4SV=1	MSMS	A375_MHC_IP_R1	1	697.3955688476562	2	697.368472	1392.72239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.845	1	93.845	93.345	94.345	0								0	0	0	0.16273	1	34495	34495		4.5289	0.19963	1				10852	29960	7641	7707	10599	10599					0.04173963650919177
EIKKDSLHF	9	Unmodified	_EIKKDSLHF_					0	0	0		ENST00000392238.2_1_2:203590973-203620291:+|nuORF	ENST00000392238.2_1_2:203590973-203620291:+|nuORF	ENST00000392238.2_1_2:203590973-203620291:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	372.2768249511719	3	372.873113	1115.59751	0.11207	4.1789E-05	-1.4278	-0.00053238	-1.3157	-0.00049059	372.872161395411	36.462	0.51016	36.462	36.133	36.644	0					16	9	3	0	0	0	0.80535	1	12111	12111		2.2828	0.19677	1	1179600			10853	11418	7642	7708	10600	10600					0.04433414506047484
EIKKIASSR	9	Unmodified	_EIKKIASSR_					0	0	0			REV__MUC16|p.M6353I|1|0.31|ENSG00000181143|chr19:8957711-8957711|C/T|missense_variant	REV__MUC16|p.M6353I|1|0.31|ENSG00000181143|chr19:8957711-8957711|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	516.7106323242188	2	516.314023	1030.61349	-0.70975	-0.00036645	-0.075717	-3.9094E-05	-0.78547	-0.00040555	516.3138302314541	132.65	1.3206	132.82	132.53	133.85	0.16487					55	25	5	0	0	0	0.80718	1	52408	52408		3.5965	3.5965	1	89335000	+		10854	27050	7643	7709	10601	10601					0.0994112074295117
EIKKQLTRRP	10	Unmodified	_EIKKQLTRRP_					0	0	0			REV__C5|p.S1420Hfs*6|1|0.02|ENSG00000106804|chr9:120963702-120963703|-/TGTGT|frameshift_variant	REV__C5|p.S1420Hfs*6|1|0.02|ENSG00000106804|chr9:120963702-120963703|-/TGTGT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	635.292724609375	2	634.893503	1267.77245	-0.96591	-0.00061325	-0.75693	-0.00048057	-1.7228	-0.0010938	634.8928819051315	136.13	0.97415	136.13	135.95	136.92	0					29	18	3	0	0	0	0.94667	1	52437	52437		2.9952	1.3426	1	10754000	+		10855	15542	7644	7710	10602	10602					0.14927834371087556
EIKKQYCLLS	10	Unmodified	_EIKKQYCLLS_					0	0	0		SEC63|p.R125C|1|0.83|ENSG00000025796|chr6:107921876-107921876|G/A|missense_variant	SEC63|p.R125C|1|0.83|ENSG00000025796|chr6:107921876-107921876|G/A|missense_variant	SEC63|p.R125C|1|0.83|ENSG00000025796|chr6:107921876-107921876|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	408.9399719238281	3	408.893408	1223.65839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.942	1	23.572	23.072	24.072	0.63014								0	0	0	0.15324	1	7319	7319		10.315	2.7063	1				10856	29129	7645	7711	10603	10603					0.05551183493980716
EIKKYGIEGD	10	Unmodified	_EIKKYGIEGD_					0	0	0		tr|U7SM72|U7SM72_FUSNUMercuricreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02103PE=3SV=1	tr|U7SM72|U7SM72_FUSNUMercuricreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02103PE=3SV=1	tr|U7SM72|U7SM72_FUSNUMercuricreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02103PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	576.232421875	2	576.300778	1150.587	-0.32869	-0.00018943	0.47963	0.00027641	0.15094	8.6987E-05	576.3009103057859	32.958	0.45517	32.958	32.684	33.14	0					17	8	3	0	0	0	0.62871	1	10706	10706		27.629	8.3718	1	5001500			10857	29521	7646	7712	10604	10604					0.017733870609617952
EIKLLRKMNLN	11	Unmodified	_EIKLLRKMNLN_					0	0	0			REV__ENST00000361203.7_2_6:56472524-56472575:-|nuORF	REV__ENST00000361203.7_2_6:56472524-56472575:-|nuORF	MSMS	A375_MHC_IP_R1	1	458.00799560546875	3	457.942873	1370.80679	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.14	1	138.14	137.64	138.64	0								0	0	0	0.16258	1	53147	53147		2.4348	0	1		+		10858	23904	7647	7713	10605	10605					0.13621914467694296
EIKPLAFST	9	Unmodified	_EIKPLAFST_					0	0	0		nc|ENSG00000168594|Q9UKF5-2|ADAM29;nc|ENSG00000168594|Q9UKF5-3|ADAM29;ENSG00000168594|ENST00000359240|ADAM29	nc|ENSG00000168594|Q9UKF5-2|ADAM29	nc|ENSG00000168594|Q9UKF5-2|ADAM29	MSMS	A375_MHC_IP_R1	1	503.2137145996094	2	503.2844	1004.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.86	1	131.86	131.36	132.36	0								0	0	0	0.15486	1	50840	50840		6.7232	1.9672	1				10859	7324	7648	7714	10606	10606					0.0521522472874949
EIKQLLVILL	10	Unmodified	_EIKQLLVILL_					0	0	0		CYP7B1|p.M457I|1|0.17|ENSG00000172817|chr8:64596792-64596792|C/T|missense_variant;ENSG00000172817|ENST00000310193|CYP7B1	CYP7B1|p.M457I|1|0.17|ENSG00000172817|chr8:64596792-64596792|C/T|missense_variant	CYP7B1|p.M457I|1|0.17|ENSG00000172817|chr8:64596792-64596792|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	1182.485107421875	1	1181.78677	1180.7795	0.27086	0.0003201	-0.54889	-0.00064868	-0.27803	-0.00032858	1181.7858849659951	117.17	1.9296	117.17	115.58	117.51	0					47	37	2	0	0	0	0.93961	1	42476	42476		0.30703	0.30703	1	16050000			10860	704	7649	7715	10607	10607					0.1963375419895783
EIKQYEPY	8	Unmodified	_EIKQYEPY_					0	0	0			REV__ENSG00000197121|ENST00000354764|PGAP1	REV__ENSG00000197121|ENST00000354764|PGAP1	MULTI-MSMS	A375_MHC_IP_R1	1	535.6644897460938	2	535.263665	1068.51278	-0.52026	-0.00027847	3.0765	0.0016468	2.5563	0.0013683	535.2654822760701	54.002	1.2678	54.002	53.656	54.924	0					30	24	2	0	0	0	0.74466	1	19333	19333		21.747	1.293	1	1618700	+		10861	22256	7650	7716	10608	10608					-0.018739560305675695
EIKREYWKEMQ	11	Unmodified	_EIKREYWKEMQ_					0	0	0			REV__ENST00000518253.5_1_6:90312741-90340720:+|nuORF	REV__ENST00000518253.5_1_6:90312741-90340720:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	770.9818725585938	2	770.384851	1538.75515	-0.75507	-0.00058169	-0.26339	-0.00020291	-1.0185	-0.00078461	770.3847682932064	136.93	0.25734	137.04	136.92	137.17	0.11134					13	4	4	0	0	0	0.73809	1	53723	53723		1.1933	0.84271	1	4435300	+		10862	18841	7651	7717	10609	10609					0.007321259830860072
EIKSTDYER	9	Unmodified	_EIKSTDYER_					0	0	0			REV__ENSG00000115364|ENST00000393909|MRPL19	REV__ENSG00000115364|ENST00000393909|MRPL19	MULTI-SECPEP	A375_MHC_IP_R2	2	380.2765197753906	3	380.855899	1139.54587	-0.041044	-1.5632E-05	-3.2009	-0.0012191	-3.242	-0.0012347	380.8545876723236	32.385	0.61211	33.122	32.755	33.367	0.73691					15	11	2	0	0	0	0.75519	1	11389	11389		14.405	7.3683	1	2161100	+		10863	17879	7652	7718	10610	10610					-0.018323739785273574
EIKVFQQH	8	Unmodified	_EIKVFQQH_					0	0	0		ERICH3|p.Y314F|1|0.47|ENSG00000178965|chr1:74620793-74620793|T/A|missense_variant	ERICH3|p.Y314F|1|0.47|ENSG00000178965|chr1:74620793-74620793|T/A|missense_variant	ERICH3|p.Y314F|1|0.47|ENSG00000178965|chr1:74620793-74620793|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	515.7089233398438	2	514.779816	1027.54508	-0.52295	-0.0002692	0.056313	2.8989E-05	-0.46664	-0.00024022	514.7797426721295	73.849	1.368	73.849	73.285	74.653	0					49	23	3	0	0	0	0.76248	2	26753	26753;26778		16.942	1.0951	1	20537000			10864	13959	7653	7719	10611;10612	10611					0.03240876163113171
EILDESDMY	9	Unmodified	_EILDESDMY_					0	0	0		ENSG00000158158|ENST00000377075|CNNM4	ENSG00000158158|ENST00000377075|CNNM4	ENSG00000158158|ENST00000377075|CNNM4	MULTI-MSMS	A375_MHC_IP_R2	2	558.1345825195312	2	557.73408	1113.45361	-0.6752	-0.00037658	1.1693	0.00065216	0.49411	0.00027558	557.7352507955761	104.72	0.96693	105.48	105.16	106.12	0.76308					53	18	4	0	0	0	0.6898	1	39619	39619		7.9102	0.62092	1	6942900			10865	6290	7654	7720	10613	10613					-0.0985822010704851
EILEHARKN	9	Unmodified	_EILEHARKN_					0	0	0			REV__ENSG00000137776|ENST00000380516|SLTM	REV__ENSG00000137776|ENST00000380516|SLTM	MULTI-SECPEP	A375_MHC_IP_R1	1	369.9454345703125	3	370.540245	1108.59891	0.27865	0.00010325	0.40763	0.00015104	0.68628	0.00025429	370.5403712932853	38.549	0.96893	38.549	38.218	39.187	0					45	18	4	0	0	0	0.55534	1	13344	13344		32.037	32.037	1	35429000	+		10866	19032	7655	7721	10614	10614					0.048950485947898414
EILERRLY	8	Unmodified	_EILERRLY_					0	0	0			REV__nc|ENSG00000114354|Q92734-4|TFG	REV__nc|ENSG00000114354|Q92734-4|TFG	MULTI-SECPEP	A375_MHC_IP_R1	1	364.6107177734375	3	364.545108	1090.61349	0.59125	0.00021554	-0.082298	-3.0001E-05	0.50895	0.00018554	364.5450982508993	44.54	1.4226	44.54	44.061	45.484	0					32	27	2	0	0	0	0.94479	1	15568	15568		6.2058	0	1	1257000	+		10867	17821	7656	7722	10615	10615					0.07181120742961866
EILKILEEE	9	Unmodified	_EILKILEEE_					0	0	0			REV__ENSG00000120832|ENST00000240050|MTERF2	REV__ENSG00000120832|ENST00000240050|MTERF2	MULTI-SECPEP	A375_MHC_IP_R1	1	372.9449157714844	3	372.544662	1114.61216	0.45647	0.00017006	0.66933	0.00024936	1.1258	0.00041941	372.54497115261614	54.406	0.86134	54.406	54.063	54.924	0					32	16	4	0	0	0	0.78348	1	19412	19412		2.4985	0	1	3168300	+		10868	18138	7657	7723	10616	10616					0.059434418635419206
EILLKHWEA	9	Unmodified	_EILLKHWEA_					0	0	0			REV__ENSG00000170160|ENST00000399273|CCDC144A	REV__ENSG00000170160|ENST00000399273|CCDC144A	MULTI-SECPEP	A375_MHC_IP_R1	1	380.3013000488281	3	380.213358	1137.61824	0.54604	0.00020761	-0.77424	-0.00029438	-0.2282	-8.6766E-05	380.2130979821102	45.64	0.50565	45.64	45.384	45.89	0					13	9	2	0	0	0	0.7905	1	15880	15880		8.4443	0.83535	1	1311300	+		10869	20969	7658	7724	10617	10617					0.054940048857361035
EILLKKKRKKK	11	Unmodified	_EILLKKKRKKK_					0	0	0		ENST00000367142.4_1_1:205687318-205687402:-|nuORF	ENST00000367142.4_1_1:205687318-205687402:-|nuORF	ENST00000367142.4_1_1:205687318-205687402:-|nuORF	MSMS	A375_MHC_IP_R1	1	706.740234375	2	706.495396	1410.97624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.07	1	144.07	143.57	144.57	0								0	0	0	0.16354	1	55256	55256		0.30703	0.30703	1				10870	11080	7659	7725	10618	10618					0.2871897881250334
EILNMDPMTV	10	Unmodified	_EILNMDPMTV_					0	0	0		nc|ENSG00000158711|P28324-2|ELK4;ENSG00000158711|ENST00000357992|ELK4	nc|ENSG00000158711|P28324-2|ELK4	nc|ENSG00000158711|P28324-2|ELK4	MULTI-SECPEP	A375_MHC_IP_R1	1	387.94049072265625	3	388.187604	1161.54098	0.47265	0.00018348	0.88375	0.00034306	1.3564	0.00052654	388.18763269709103	21.572	0.40561	21.572	21.301	21.706	0					12	7	3	0	0	0	0.8528	1	5618	5618		10.315	3.6849	1	1141000			10871	6325	7660	7726	10619	10619					-0.033327174371606816
EILRGDFS	8	Unmodified	_EILRGDFS_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-MSMS	A375_MHC_IP_R1	1	469.142578125	2	468.742899	935.471246	-0.35775	-0.00016769	0.61529	0.00028841	0.25753	0.00012072	468.7432813702558	77.195	0.812	77.195	76.878	77.69	0					25	15	2	0	0	0	0.77583	1	28134	28134		10.074	1.4806	1	3422700			10872	7616	7661	7727	10620	10620					0.0009290800077224048
EILRKRLSVS	10	Unmodified	_EILRKRLSVS_					0	0	0		nc|ENSG00000086015|Q6P0Q8-2|MAST2;ENSG00000086015|ENST00000361297|MAST2	nc|ENSG00000086015|Q6P0Q8-2|MAST2	nc|ENSG00000086015|Q6P0Q8-2|MAST2	MSMS	A375_MHC_IP_R1	1	600.7894897460938	2	600.874779	1199.73501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.83	1	81.83	81.33	82.33	0								0	0	0	0.15435	1	29910	29910		6.7232	2.3939	1				10873	1826	7662	7728	10621	10621					0.14312743105460868
EILRLFFPVIY	11	Unmodified	_EILRLFFPVIY_					0	0	0		nc|ENSG00000198791|Q9UIV1-2|CNOT7;ENSG00000198791|ENST00000361272|CNOT7	nc|ENSG00000198791|Q9UIV1-2|CNOT7	nc|ENSG00000198791|Q9UIV1-2|CNOT7	MULTI-MSMS	A375_MHC_IP_R1	1	470.9724426269531	3	470.611229	1408.81186	-0.62059	-0.00029205	-0.12463	-5.8652E-05	-0.74522	-0.00035071	470.6110448061121	132.34	0.81038	132.34	132.03	132.84	0					27	15	2	0	0	0	0.73881	1	51060	51060		0.50596	0.09769	1	4558000			10874	9325	7663	7729	10622	10622					0.12380541601942241
EILRLFFPVIY	11	Unmodified	_EILRLFFPVIY_					0	0	0		nc|ENSG00000198791|Q9UIV1-2|CNOT7;ENSG00000198791|ENST00000361272|CNOT7	nc|ENSG00000198791|Q9UIV1-2|CNOT7	nc|ENSG00000198791|Q9UIV1-2|CNOT7	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	470.611229	1408.81186	-0.62059	-0.00029205	-0.12463	-5.8652E-05	-0.74522	-0.00035071	470.6110448061121	132.34	0.81038	132.34	132.03	132.84	0	-0.080657	0.00013451	NaN	0.50596	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4558000			10875	9325	7663	7729							0.12380541601942241
EILRRQMAP	9	Unmodified	_EILRRQMAP_					0	0	0			REV__ENST00000537914.5_1_1:226053833-226054426:-|nuORF	REV__ENST00000537914.5_1_1:226053833-226054426:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	372.60150146484375	3	371.878092	1112.61245	0.1171	4.3548E-05	0.62693	0.00023314	0.74403	0.00027669	371.87825841446363	66.606	0.61185	66.606	66.275	66.887	0					20	11	2	0	0	0	0.80101	1	24035	24035		2.7352	2.5283	1	3636200	+		10876	25928	7664	7730	10623	10623					0.06064583102374854
EILSSCSDCDE	11	Unmodified	_EILSSCSDCDE_					0	0	0		ENSG00000131788|ENST00000393045|PIAS3	ENSG00000131788|ENST00000393045|PIAS3	ENSG00000131788|ENST00000393045|PIAS3	MSMS	A375_MHC_IP_R2	2	600.674560546875	2	600.723386	1199.43222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.603	1	74.338	73.838	74.838	0.73541								0	0	0	0.16191	1	27936	27936		8.7454	4.2165	1				10877	4352	7665	7731	10624	10624					-0.15951973198070846
EILTALGLL	9	Unmodified	_EILTALGLL_					0	0	0		ENST00000467818.1_1_21:43696971-43706199:+|nuORF;ENST00000472587.5_1_21:43696971-43716499:+|nuORF;nc|ENSG00000160179|P45844-7|ABCG1;nc|ENSG00000160179|P45844-6|ABCG1;nc|ENSG00000160179|P45844-5|ABCG1;ENSG00000160179|ENST00000398449|ABCG1;nc|ENSG00000160179|P45844-3|ABCG1;nc|ENSG00000160179|P45844-2|ABCG1;nc|ENSG00000160179|P45844|ABCG1;nc|ENSG00000160179|P45844-8|ABCG1	ENST00000467818.1_1_21:43696971-43706199:+|nuORF	ENST00000467818.1_1_21:43696971-43706199:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	942.9852294921875	1	942.58701	941.579734	-0.22376	-0.00021091	0.74036	0.00069785	0.5166	0.00048694	942.5871799730993	131.15	0.30331	131.15	131.02	131.33	0					8	5	2	0	0	0	0.050162	1	50580	50580		64.236	9.4628	1	2596500			10878	6400	7666	7732	10625	10625					0.10660699251184269
EILVELVQY	9	Unmodified	_EILVELVQY_					0	0	0		ENSG00000184381|ENST00000332509|PLA2G6;nc|ENSG00000184381|O60733-4|PLA2G6;nc|ENSG00000184381|O60733-3|PLA2G6;nc|ENSG00000184381|O60733-2|PLA2G6	ENSG00000184381|ENST00000332509|PLA2G6	ENSG00000184381|ENST00000332509|PLA2G6	MULTI-MSMS	A375_MHC_IP_R1	1	554.732177734375	2	553.310615	1104.60668	-0.37961	-0.00021004	-0.48071	-0.00026598	-0.86032	-0.00047602	553.3103219682307	128.22	1.6209	128.22	127.27	128.89	0					33	22	4	0	0	0	0.52905	1	49231	49231		25.399	2.2509	1	16451000			10879	8579	7667	7733	10626	10626					0.05855763071713227
EILVILKLVC	10	Unmodified	_EILVILKLVC_					0	0	0		OR13F1|p.A183V|1|0.32|ENSG00000186881|chr9:104504810-104504810|C/T|missense_variant	OR13F1|p.A183V|1|0.32|ENSG00000186881|chr9:104504810-104504810|C/T|missense_variant	OR13F1|p.A183V|1|0.32|ENSG00000186881|chr9:104504810-104504810|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	571.9185791015625	2	571.864503	1141.71445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.532	1	53.284	52.784	53.784	0.75225								0	0	0	0.1552	1	19802	19802		3.9444	0	1				10880	15063	7668	7734	10627	10627					0.14926436401447063
EINDEEDSSG	10	Unmodified	_EINDEEDSSG_					0	0	0			REV__nc|nan|Q8N6N3-3|C1orf52	REV__nc|nan|Q8N6N3-3|C1orf52	MULTI-MSMS	A375_MHC_IP_R2	2	548.6759033203125	2	547.709647	1093.40474	-0.78582	-0.0004304	-0.23054	-0.00012627	-1.0164	-0.00055667	547.7104699562886	76.893	0.55368	77.636	77.354	77.908	0.74293					24	10	3	0	0	0	0.70496	1	29123	29123		10.074	0	1	1251200	+		10881	20283	7669	7735	10628	10628					-0.13822417142478116
EINFIFCDL	9	Unmodified	_EINFIFCDL_					0	0	0		ENSG00000186513|ENST00000641291|OR9Q2	ENSG00000186513|ENST00000641291|OR9Q2	ENSG00000186513|ENST00000641291|OR9Q2	MULTI-SECPEP	A375_MHC_IP_R1	1	557.1141357421875	2	557.267893	1112.52123	-0.40703	-0.00022682	2.2626	0.0012609	1.8556	0.001034	557.7710445512288	51.941	0.3066	51.941	51.778	52.085	0					8	5	2	0	0	0	0.67483	1	18402	18402		6.2058	0	1	2301500			10882	8755	7670	7736	10629	10629					-0.030527253855780145
EINHDFPD	8	Unmodified	_EINHDFPD_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	A375_MHC_IP_R1	1	494.1139831542969	2	493.714339	985.414125	-0.29752	-0.00014689	-1.0431	-0.00051498	-1.3406	-0.00066187	493.7138843125962	102.1	1.1139	102.1	101.85	102.96	0					30	21	2	0	0	0	0.77562	1	37534	37534		10.824	10.824	1	1879700			10883	3120	7671	7737	10630	10630					-0.07916559275611235
EINHDFPD	8	Unmodified	_EINHDFPD_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	493.714339	985.414125	-0.40468	-0.0001998	-1.1592	-0.00057229	-1.5638	-0.00077209	493.7138048427842	101.25	1.3716	102.01	101.75	103.12	0.76428	-0.041575	-4.3929E-05	NaN	10.824	35	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1232900			10884	3120	7671	7737							-0.07916559275611235
EINKIIRDL	9	Unmodified	_EINKIIRDL_					0	0	0		ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50	ENSG00000113522|ENST00000378823|RAD50	ENSG00000113522|ENST00000378823|RAD50	MULTI-SECPEP	A375_MHC_IP_R2	2	372.2922668457031	3	371.892396	1112.65536	0.0077723	2.8905E-06	0.017953	6.6765E-06	0.025725	9.567E-06	371.8923652252552	52.512	0.55721	53.264	53.032	53.59	0.75225					19	10	3	0	0	0	0.67539	1	19790	19790		11.518	5.7344	1	4192200			10885	3158	7672	7738	10631	10631					0.1035367643146401
EINKLLRPD	9	Unmodified	_EINKLLRPD_					0	0	0			REV__nc|ENSG00000132932|Q9NTI2-3|ATP8A2	REV__nc|ENSG00000132932|Q9NTI2-3|ATP8A2	MULTI-SECPEP	A375_MHC_IP_R2	2	1097.6031494140625	1	1097.63133	1096.62406	0.2759	0.00030283	2.456	0.0026958	2.7319	0.0029986	1099.6384018889837	115.77	0.30459	116.46	116.24	116.54	0.68999					9	5	3	0	0	0	0.76827	1	43573	43573		1.4819	0	1	7873800	+		10886	18692	7673	7739	10632	10632					0.07961103397406077
EINKQLIF	8	Unmodified	_EINKQLIF_					0	0	0		ENSG00000116918|ENST00000366639|TSNAX	ENSG00000116918|ENST00000366639|TSNAX	ENSG00000116918|ENST00000366639|TSNAX	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1921691894531	2	502.792392	1003.57023	-0.70163	-0.00035278	0.45003	0.00022627	-0.2516	-0.0001265	502.7925545041548	81.867	1.0635	82.61	81.928	82.992	0.74293					29	20	2	0	0	0	0.51146	1	30958	30958		61.357	17.585	1	6716100			10887	3444	7674	7740	10633	10633					0.06858930965677246
EINKQLIF	8	Unmodified	_EINKQLIF_					0	0	0		ENSG00000116918|ENST00000366639|TSNAX	ENSG00000116918|ENST00000366639|TSNAX	ENSG00000116918|ENST00000366639|TSNAX	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	502.792392	1003.57023	-0.24133	-0.00012134	0.61949	0.00031147	0.37816	0.00019014	502.7924304257815	82.722	1.8762	82.722	81.607	83.483	0	0.056272	0.00011074	NaN	71.134	79	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8680300			10888	3444	7674	7740							0.06858930965677246
EINLMFSLK	9	Unmodified	_EINLMFSLK_					0	0	0		ENST00000309964.8_1_4:56342137-56348912:-|nuORF	ENST00000309964.8_1_4:56342137-56348912:-|nuORF	ENST00000309964.8_1_4:56342137-56348912:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	365.91729736328125	3	365.535332	1093.58417	0.034866	1.2745E-05	2.488	0.00090945	2.5229	0.00092219	365.53661462838653	32.116	0.45728	32.853	32.654	33.112	0.73692					11	8	2	0	0	0	0.58271	1	11339	11339		3.8763	0	1	981180			10889	10615	7675	7741	10634	10634					0.04111840402447342
EINQQLHLL	9	Unmodified	_EINQQLHLL_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	A375_MHC_IP_R1	1	369.5960998535156	3	369.876746	1106.60841	0.13678	5.0593E-05	-2.0256	-0.00074922	-1.8888	-0.00069863	369.8760864293427	28.1	0.45193	28.1	27.836	28.288	0					11	8	2	0	0	0	0.77003	1	8533	8533		11.495	4.8643	1	916820	+		10890	22253	7676	7742	10635	10635					0.05936816880330298
EIPEGLNNEL	10	Unmodified	_EIPEGLNNEL_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MSMS	A375_MHC_IP_R1	1	564.1813354492188	2	564.282586	1126.55062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.711	1	48.711	48.211	49.211	0								0	0	0	0.15038	1	17198	17198		17.113	0.1706	1		+		10891	16376	7677	7743	10636	10636					-0.007594898357638158
EIPNGYGRQVA	11	Unmodified	_EIPNGYGRQVA_					0	0	0			REV__ENSG00000169347|ENST00000302555|GP2	REV__ENSG00000169347|ENST00000302555|GP2	MULTI-SECPEP	A375_MHC_IP_R2	2	401.25311279296875	3	401.875405	1202.60439	-0.36912	-0.00014834	-0.16794	-6.7489E-05	-0.53705	-0.00021583	401.8753205170134	24.662	0.81189	25.306	24.857	25.668	0.64368					36	15	3	0	0	0	0.97182	1	8145	8145		3.3557	0	1	20870000	+		10892	20926	7678	7744	10637	10637					0.011187273866198666
EIPPFCAP	8	Unmodified	_EIPPFCAP_					0	0	0		MAP3K14|p.S621F|1|0.38|ENSG00000006062|chr17:45270523-45270523|G/A|missense_variant	MAP3K14|p.S621F|1|0.38|ENSG00000006062|chr17:45270523-45270523|G/A|missense_variant	MAP3K14|p.S621F|1|0.38|ENSG00000006062|chr17:45270523-45270523|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	437.1695556640625	2	437.212389	872.410226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.57	1	102.57	102.07	103.07	0								0	0	0	0.16876	1	37696	37696		9.3474	3.587	1				10893	14348	7679	7745	10638	10638					-0.031083203030334516
EIPPGRAGR	9	Unmodified	_EIPPGRAGR_					0	0	0		nc|ENSG00000163362|Q3KP66|INAVA	nc|ENSG00000163362|Q3KP66|INAVA	nc|ENSG00000163362|Q3KP66|INAVA	MSMS	A375_MHC_IP_R2	2	476.5984802246094	2	476.769783	951.525013	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.23	1	108.98	108.48	109.48	0.75436								0	0	0	0.15486	1	40872	40872		3.9444	0	1				10894	14718	7680	7746	10639	10639					0.047311252231338585
EIPPRKFQY	9	Unmodified	_EIPPRKFQY_					0	0	0		IL31RA|p.S700F|3|0.35|ENSG00000164509|chr5:55916924-55916924|C/T|missense_variant	IL31RA|p.S700F|3|0.35|ENSG00000164509|chr5:55916924-55916924|C/T|missense_variant	IL31RA|p.S700F|3|0.35|ENSG00000164509|chr5:55916924-55916924|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	588.7061157226562	2	589.321848	1176.62914	-0.9776	-0.00057612	-0.004898	-2.8865E-06	-0.9825	-0.00057901	589.3216823789253	52.427	0.25151	53.179	52.983	53.234	0.75225					6	4	2	0	0	0	0.62767	1	19698	19698		11.64	0.81637	1	642830			10895	14157	7681	7747	10640	10640					0.04789407260000189
EIPQSQGWY	9	Unmodified	_EIPQSQGWY_					0	0	0		PCLO|p.M3987*|2|0.34|ENSG00000186472|chr7:82916028-82916028|A/-|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO	PCLO|p.M3987*|2|0.34|ENSG00000186472|chr7:82916028-82916028|A/-|frameshift_variant	PCLO|p.M3987*|2|0.34|ENSG00000186472|chr7:82916028-82916028|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	554.6580200195312	2	554.258914	1106.50327	-0.5813	-0.00032219	-0.95138	-0.00052731	-1.5327	-0.0008495	554.2583614605975	57.999	0.60833	57.999	57.72	58.328	0					17	11	2	0	0	0	0.74412	1	20856	20856		6.2058	0	1	1437600			10896	8749	7682	7748	10641	10641					-0.04571724316087966
EIPQSQGWY	9	Unmodified	_EIPQSQGWY_					0	0	0		PCLO|p.M3987*|2|0.34|ENSG00000186472|chr7:82916028-82916028|A/-|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO	PCLO|p.M3987*|2|0.34|ENSG00000186472|chr7:82916028-82916028|A/-|frameshift_variant	PCLO|p.M3987*|2|0.34|ENSG00000186472|chr7:82916028-82916028|A/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	554.186279296875	2	554.258914	1106.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.472	1	31.191	30.691	31.691	0.71857								0	0	0	0.15486	1	10713	10713		10.824	0.75	1				10897	8749	7682	7748	10642	10642					-0.04571724316087966
EIPQSQGWY	9	Unmodified	_EIPQSQGWY_					0	0	0		PCLO|p.M3987*|2|0.34|ENSG00000186472|chr7:82916028-82916028|A/-|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO	PCLO|p.M3987*|2|0.34|ENSG00000186472|chr7:82916028-82916028|A/-|frameshift_variant	PCLO|p.M3987*|2|0.34|ENSG00000186472|chr7:82916028-82916028|A/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	554.258914	1106.50327	-1.1388	-0.0006312	0.15293	8.4762E-05	-0.9859	-0.00054644	554.2587473527669	57.325	0.61314	58.074	57.814	58.427	0.74894	0.037499	0.00056017	NaN	3.2813	13	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1709400			10898	8749	7682	7748							-0.04571724316087966
EIQAGNIVKKY	11	Unmodified	_EIQAGNIVKKY_					0	0	0		tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	421.9750671386719	3	421.574955	1261.70304	0.098956	4.1717E-05	-0.28613	-0.00012062	-0.18717	-7.8906E-05	421.5748468205133	20.332	0.65862	20.332	19.98	20.638	0					44	12	5	0	0	0	0.4957	3	5139	5139;5177;5182		31.462	6.6216	1	40385000			10899	29802	7683	7749	10643;10644;10645	10643					0.08265330631661527
EIQAGNIVKKY	11	Unmodified	_EIQAGNIVKKY_					0	0	0		tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	421.97479248046875	3	421.574955	1261.70304	0.40484	0.00017067	-0.34204	-0.0001442	0.0628	2.6475E-05	421.57473335957116	22.444	0.40678	22.444	22.267	22.673	0					16	7	4	0	0	0	0.66409	1	6032	6032		18.34	2.0652	1	5485000			10900	29802	7683	7749	10646	10646					0.08265330631661527
EIQAGNIVKKY	11	Unmodified	_EIQAGNIVKKY_					0	0	0		tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	421.97454833984375	3	421.574955	1261.70304	-0.3869	-0.00016311	-0.048291	-2.0358E-05	-0.4352	-0.00018347	421.57494233080047	19.099	0.40093	19.702	19.483	19.884	0.60308					30	7	5	0	0	0	0.4957	1	5802	5802		31.462	7.4977	1	67169000			10901	29802	7683	7749	10647	10647					0.08265330631661527
EIQAGNIVKKY	11	Unmodified	_EIQAGNIVKKY_					0	0	0		tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	421.9749450683594	3	421.574955	1261.70304	-0.45397	-0.00019138	0.20771	8.7565E-05	-0.24626	-0.00010382	421.5749935110047	21.947	0.30654	22.567	22.387	22.693	0.61932					8	5	2	0	0	0	0.94804	1	6966	6966		18.34	4.169	1	3564200			10902	29802	7683	7749	10648	10648					0.08265330631661527
EIQAGNIVKKY	11	Unmodified	_EIQAGNIVKKY_					0	0	0		tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	421.574955	1261.70304	0.40484	0.00017067	-0.34204	-0.0001442	0.0628	2.6475E-05	421.57473335957116	22.444	0.40678	22.444	22.267	22.673	0	-0.061041	-0.00013807	NaN	18.34	16	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5485000			10903	29802	7683	7749							0.08265330631661527
EIQCISHIY	9	Unmodified	_EIQCISHIY_					0	0	0		ENSG00000182533|ENST00000343849|CAV3	ENSG00000182533|ENST00000343849|CAV3	ENSG00000182533|ENST00000343849|CAV3	MULTI-MSMS	A375_MHC_IP_R1	1	555.6910400390625	2	553.270967	1104.52738	-0.43959	-0.00024321	-1.2267	-0.00067872	-1.6663	-0.00092193	553.2692177234878	72.603	1.0652	72.603	72.22	73.285	0					103	20	6	0	0	0	0.63811	1	26581	26581		12.532	1.7076	1	52738000			10904	8414	7684	7750	10649	10649					-0.020702071540654288
EIQDPYSWGG	10	Unmodified	_EIQDPYSWGG_					0	0	0		ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	MULTI-SECPEP	A375_MHC_IP_R1	1	576.0618286132812	2	576.253828	1150.4931	-0.12245	-7.0562E-05	2.1108	0.0012164	1.9884	0.0011458	576.2550488342714	91.973	0.75787	91.973	91.503	92.261	0					22	14	2	0	0	0	0.91909	1	33732	33732		9.3831	0	1	1499400			10905	6153	7685	7751	10650	10650					-0.07612332041321679
EIQGLLQSV	9	Unmodified	_EIQGLLQSV_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-SECPEP	A375_MHC_IP_R1	1	493.6584167480469	2	493.779482	985.544411	-0.32701	-0.00016147	-0.24626	-0.0001216	-0.57326	-0.00028307	493.7794060507608	89.434	0.45762	89.434	89.171	89.628	0					13	8	2	0	0	0	0.59098	1	32838	32838		21.537	2.28	1	1561300			10906	8133	7686	7752	10651	10651					0.05106036723395846
EIQGRSAEEAY	11	Unmodified	_EIQGRSAEEAY_					0	0	0		nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;ENSG00000186416|ENST00000688521|NKRF	nc|ENSG00000186416|O15226|NKRF	nc|ENSG00000186416|O15226|NKRF	MSMS	A375_MHC_IP_R2	2	626.693603515625	2	626.793849	1251.57314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.633	1	66.371	65.871	66.871	0.73811								0	0	0	0.16191	1	24883	24883		8.7454	1.1365	1				10907	8746	7687	7753	10652	10652					-0.04257890438134382
EIQIGIKSL	9	Unmodified	_EIQIGIKSL_					0	0	0			REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1	REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	501.2051086425781	2	500.8055	999.596446	-0.49753	-0.00024917	-0.64414	-0.00032259	-1.1417	-0.00057175	500.80537907725744	69.496	0.71172	70.23	69.981	70.693	0.73421					20	13	2	0	0	0	0.65527	1	26425	26425		8.1555	0.54658	1	1845600	+		10908	28658	7688	7754	10653	10653					0.09663200137140393
EIQKNKPY	8	Unmodified	_EIQKNKPY_					0	0	0		nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	MULTI-MSMS	A375_MHC_IP_R1	1	510.67950439453125	2	510.279649	1018.54475	-0.81675	-0.00041677	0.39318	0.00020063	-0.42357	-0.00021614	510.2799989731222	41.484	0.56226	41.484	41.266	41.828	0					16	10	2	0	0	0	0.69583	1	14370	14370		36.044	6.9626	1	2993900			10909	7623	7689	7755	10654	10654					0.03621456443238458
EIQNTLPKF	9	Unmodified	_EIQNTLPKF_					0	0	0			REV__nc|ENSG00000165568|Q96JD6-4|AKR1E2	REV__nc|ENSG00000165568|Q96JD6-4|AKR1E2	MULTI-SECPEP	A375_MHC_IP_R2	2	364.2693176269531	3	363.86948	1088.58661	-0.39446	-0.00014353	-0.18156	-6.6064E-05	-0.57602	-0.0002096	363.86939832488474	26.642	0.35668	27.302	27.109	27.466	0.65992					14	6	3	0	0	0	0.69507	1	9048	9048		9.544	0	1	2951200	+		10910	20596	7690	7756	10655	10655					0.045860121317673475
EIQRWYRSVTW	11	Unmodified	_EIQRWYRSVTW_					0	0	0		ENST00000546787.1_1_12:113730842-113731967:+|nuORF	ENST00000546787.1_1_12:113730842-113731967:+|nuORF	ENST00000546787.1_1_12:113730842-113731967:+|nuORF	MSMS	A375_MHC_IP_R1	1	762.40380859375	2	762.391325	1522.7681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.9	1	123.9	123.4	124.4	0								0	0	0	0.16213	1	46420	46420		7.609	2.3121	1				10911	13333	7691	7757	10656	10656					0.02762325157482337
EIQRYNTPGF	10	Unmodified	_EIQRYNTPGF_					0	0	0		ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	MULTI-MSMS	A375_MHC_IP_R2	2	613.2000122070312	2	612.80402	1223.59349	-0.8451	-0.00051788	-1.8281	-0.0011202	-2.6732	-0.0016381	612.8033192483256	38.187	0.66527	38.962	38.585	39.25	0.77451					23	12	2	0	0	0	0.2347	1	13985	13985		45.7	3.86	1	5080200			10912	2837	7692	7758	10657	10657					-0.009366749876789981
EIRASIVTV	9	Unmodified	_EIRASIVTV_					0	0	0		NCAPG|p.P472S|1|0.68|ENSG00000109805|chr4:17824998-17824998|C/T|missense_variant	NCAPG|p.P472S|1|0.68|ENSG00000109805|chr4:17824998-17824998|C/T|missense_variant	NCAPG|p.P472S|1|0.68|ENSG00000109805|chr4:17824998-17824998|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	494.6953125	2	494.295299	986.576045	-0.3437	-0.00016989	0.62433	0.0003086	0.28063	0.00013871	494.2955942643555	59.979	1.4748	59.979	59.651	61.126	0					74	28	5	0	0	0	0.04395	1	21535	21535		81.89	0	1	61543000			10913	14980	7693	7759	10658	10658					0.08222029477349224
EIRDINRVY	9	Unmodified	_EIRDINRVY_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF;ENST00000489109.1_1_9:75775238-75780181:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	A375_MHC_IP_R1	1	393.9656982421875	3	393.21565	1176.62512	0.088015	3.4609E-05	-0.54713	-0.00021514	-0.45912	-0.00018053	393.2150828373753	34.835	0.8118	34.835	34.507	35.319	0					37	15	4	0	0	0	0.48411	1	11564	11564		20.581	6.1756	1	42716000			10914	4636	7694	7760	10659	10659					0.0438731776628174
EIRDINRVY	9	Unmodified	_EIRDINRVY_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF;ENST00000489109.1_1_9:75775238-75780181:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-SECPEP	A375_MHC_IP_R1	1	589.7196044921875	2	589.319837	1176.62512	-0.28125	-0.00016575	-0.60783	-0.0003582	-0.88908	-0.00052395	589.31953634556	34.85	0.50693	34.85	34.557	35.064	0					12	9	2	0	0	0	0.72222	1	11553	11553		26.268	24.424	1	7971400			10915	4636	7694	7760	10660	10660					0.0438731776628174
EIRDINRVY	9	Unmodified	_EIRDINRVY_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF;ENST00000489109.1_1_9:75775238-75780181:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	A375_MHC_IP_R2	2	393.9396057128906	3	393.21565	1176.62512	-0.56653	-0.00022277	0.55387	0.00021779	-0.012661	-4.9787E-06	393.2156625929274	34.141	0.50835	34.894	34.6	35.108	0.75225					28	9	4	0	0	0	0.37338	1	12228	12228		26.021	11.615	1	21730000			10916	4636	7694	7760	10661	10661					0.0438731776628174
EIRDINRVY	9	Unmodified	_EIRDINRVY_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF;ENST00000489109.1_1_9:75775238-75780181:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-SECPEP	A375_MHC_IP_R2	2	589.7189331054688	2	589.319837	1176.62512	-0.9519	-0.00056097	-0.62608	-0.00036896	-1.578	-0.00092994	589.319500333687	34.127	0.35455	34.879	34.702	35.057	0.75225					10	6	2	0	0	0	0.6191	1	12296	12296		29.841	16.798	1	6128400			10917	4636	7694	7760	10662	10662					0.0438731776628174
EIRERATV	8	Unmodified	_EIRERATV_					0	0	0		ENSG00000125485|ENST00000372159|DDX31;nc|ENSG00000125485|Q9H8H2|DDX31	ENSG00000125485|ENST00000372159|DDX31	ENSG00000125485|ENST00000372159|DDX31	MSMS	A375_MHC_IP_R2	2	487.2076416015625	2	487.274898	972.535243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.647	1	38.421	37.921	38.921	0.77451								0	0	0	0.16876	1	13791	13791		28.487	0.85804	1				10918	3969	7695	7761	10663	10663					0.04787688157705361
EIRHYLFR	8	Unmodified	_EIRHYLFR_					0	0	0		ENSG00000254656|ENST00000649591|RTL1	ENSG00000254656|ENST00000649591|RTL1	ENSG00000254656|ENST00000649591|RTL1	MULTI-SECPEP	A375_MHC_IP_R2	2	566.6961669921875	2	567.314358	1132.61416	-0.29645	-0.00016818	-0.27835	-0.00015791	-0.5748	-0.00032609	567.3136034239803	79.002	0.3069	79.747	79.489	79.796	0.74474					7	5	2	0	0	0	0.90057	1	29894	29894		29.082	5.061	1	680870			10919	9881	7696	7762	10664	10664					0.05315960182656454
EIRIIPAKKY	10	Unmodified	_EIRIIPAKKY_					0	0	0		nc|ENSG00000116133|Q15392-2|DHCR24;ENSG00000116133|ENST00000371269|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	MSMS	A375_MHC_IP_R1	1	410.9522705078125	3	410.923807	1229.74959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.815	1	33.815	33.315	34.315	0								0	0	0	0.14624	1	11077	11077		24.957	18.765	1				10920	3373	7697	7763	10665	10665					0.14390815253614164
EIRLTPYSTI	10	Unmodified	_EIRLTPYSTI_					0	0	0			REV__ENSG00000163785|ENST00000623711|RYK	REV__ENSG00000163785|ENST00000623711|RYK	MULTI-SECPEP	A375_MHC_IP_R2	2	398.31158447265625	3	398.223923	1191.64994	-0.0065302	-2.6005E-06	-2.3069	-0.00091868	-2.3135	-0.00092128	398.2230986322463	42.826	0.25244	43.598	43.523	43.775	0.7724					6	4	2	0	0	0	0.91643	1	15953	15953		8.4443	4.2548	1	869780	+		10921	20410	7698	7764	10666	10666					0.061779528489978475
EIRLVKQKL	9	Unmodified	_EIRLVKQKL_					0	0	0		nc|ENSG00000162520|Q9H7C4-2|SYNC;ENSG00000162520|ENST00000409190|SYNC	nc|ENSG00000162520|Q9H7C4-2|SYNC	nc|ENSG00000162520|Q9H7C4-2|SYNC	MULTI-MSMS	A375_MHC_IP_R1	1	376.29864501953125	3	376.248403	1125.72338	-0.0086889	-3.2692E-06	0.16597	6.2446E-05	0.15728	5.9177E-05	376.24840531237174	29.939	1.554	29.939	29.657	31.211	0					84	30	4	0	0	0	0.59266	1	9324	9324		15.248	4.449	1	97095000			10922	6543	7699	7765	10667	10667					0.16554546082124943
EIRQQHEL	8	Unmodified	_EIRQQHEL_					0	0	0			REV__nc|ENSG00000151725|Q71F23-2|CENPU	REV__nc|ENSG00000151725|Q71F23-2|CENPU	MULTI-MSMS	A375_MHC_IP_R1	1	527.1856079101562	2	526.777805	1051.54106	-0.96617	-0.00050896	-0.84533	-0.0004453	-1.8115	-0.00095426	526.777692191	29.296	0.30382	29.296	29.149	29.453	0					7	5	2	0	0	0	0.76248	1	9217	9217		16.942	2.104	1	3594100	+		10923	19769	7700	7766	10668	10668					0.017347866693853575
EIRRFWKL	8	Unmodified	_EIRRFWKL_					0	0	0		nc|ENSG00000148814|Q9C0I9-2|LRRC27;ENSG00000148814|ENST00000368614|LRRC27;nc|ENSG00000148814|Q9C0I9-4|LRRC27;nc|ENSG00000148814|Q9C0I9-3|LRRC27	nc|ENSG00000148814|Q9C0I9-2|LRRC27	nc|ENSG00000148814|Q9C0I9-2|LRRC27	MULTI-MSMS	A375_MHC_IP_R2	2	383.6045837402344	3	383.229342	1146.6662	-0.17121	-6.5612E-05	2.4427	0.0009361	2.2715	0.00087049	383.23065949249013	39.419	0.91769	40.194	39.658	40.575	0.77451					22	17	3	0	0	0	0.77643	1	14523	14523		5.7319	5.7319	1	3172700			10924	5762	7701	7767	10669	10669					0.09873123596435107
EIRRRFGK	8	Unmodified	_EIRRRFGK_					0	0	0		ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENSG00000137857|ENST00000389037|DUOX1;ENST00000557893.5_1_15:45440187-45444854:+|nuORF	ENST00000561220.6_1_15:45434150-45457096:+|nuORF	ENST00000561220.6_1_15:45434150-45457096:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1062.1234130859375	1	1061.63267	1060.6254	0.28401	0.00030151	0.55291	0.00058698	0.83692	0.0008885	1061.6332243718157	113.57	0.30673	114.28	114.08	114.38	0.70985					6	5	2	0	0	0	0.972	1	42822	42822		5.2307	0.90143	1	3071300			10925	4930	7702	7768	10670	10670					0.09750782276819336
EIRSILKQF	9	Unmodified	_EIRSILKQF_					0	0	0			REV__nc|ENSG00000146376|Q8N392-2|ARHGAP18	REV__nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	A375_MHC_IP_R2	2	378.5877380371094	3	378.560758	1132.66044	-0.31329	-0.0001186	3.597	0.0013617	3.2837	0.0012431	378.5620104344944	25.215	0.25731	25.859	25.719	25.976	0.64368					7	4	2	0	0	0	0.67152	1	8444	8444		9.544	2.0669	1	5191900	+		10926	19530	7703	7769	10671	10671					0.099419802940929
EIRTLAWLE	9	Unmodified	_EIRTLAWLE_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MSMS	A375_MHC_IP_R1	1	377.4421691894531	3	377.544996	1129.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.605	1	36.605	36.105	37.105	0								0	0	0	0.15486	1	12263	12263		7.1017	0	1		+		10927	22171	7704	7770	10672	10672					0.05353701023091162
EIRWVDCYF	9	Unmodified	_EIRWVDCYF_					0	0	0		FARS2|p.P269S|1|0.27|ENSG00000145982|chr6:5431073-5431073|C/T|missense_variant;ENSG00000145982|ENST00000274680|FARS2	FARS2|p.P269S|1|0.27|ENSG00000145982|chr6:5431073-5431073|C/T|missense_variant	FARS2|p.P269S|1|0.27|ENSG00000145982|chr6:5431073-5431073|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	410.9245300292969	3	410.858586	1229.55393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.043	1	63.785	63.285	64.285	0.74263								0	0	0	0.15486	1	23901	23901		3.5871	0.59182	1				10928	5597	7705	7771	10673	10673					-0.0516651826276302
EIRYESYL	8	Unmodified	_EIRYESYL_					0	0	0			REV__tr|U7SPR8|U7SPR8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01875PE=4SV=1	REV__tr|U7SPR8|U7SPR8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01875PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1685180664062	2	536.769114	1071.52368	-0.77647	-0.00041678	0.14392	7.7254E-05	-0.63255	-0.00033953	536.7690693824849	90.975	0.65884	91.71	91.362	92.021	0.7345					23	12	2	0	0	0	0.8957	1	34582	34582		28.487	6.9499	1	5594400	+		10929	28363	7706	7772	10674	10674					-0.00922553656278069
EISCECFSYQ	10	Unmodified	_EISCECFSYQ_					0	0	0		ENST00000227758.6_3_11:102220497-102220638:+|nuORF	ENST00000227758.6_3_11:102220497-102220638:+|nuORF	ENST00000227758.6_3_11:102220497-102220638:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	604.3670043945312	2	604.733557	1207.45256	-0.33956	-0.00020534	-0.91923	-0.00055589	-1.2588	-0.00076123	605.2338897060904	59.405	0.35429	59.405	59.245	59.599	0					10	6	2	0	0	0	0.91909	1	21396	21396		13.906	6.6168	1	919310			10930	10127	7707	7773	10675	10675					-0.14286757747595402
EISDAVGPV	9	Unmodified	_EISDAVGPV_					0	0	0		ENSG00000107554|ENST00000324109|DNMBP;nc|ENSG00000107554|Q6XZF7-2|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	MULTI-SECPEP	A375_MHC_IP_R1	1	443.6213073730469	2	443.729458	885.444362	0.041644	1.8479E-05	0.6685	0.00029663	0.71014	0.00031511	443.7297746774437	45.966	0.25446	45.966	45.789	46.043	0					6	4	2	0	0	0	0.71541	1	16133	16133		7.2892	0	1	1189100			10931	2742	7708	7774	10676	10676					-0.0029420061041491863
EISDMRHTV	9	Unmodified	_EISDMRHTV_					0	0	0			REV__ENSG00000025293|ENST00000374012|PHF20	REV__ENSG00000025293|ENST00000374012|PHF20	MULTI-SECPEP	A375_MHC_IP_R2	2	544.6627197265625	2	544.263673	1086.51279	-1.1101	-0.00060417	-1.3305	-0.00072415	-2.4406	-0.0013283	544.2627893139479	60.847	0.4549	61.592	61.314	61.769	0.74503					13	8	3	0	0	0	0.65246	1	23045	23045		6.7232	1.8262	1	2837300	+		10932	16286	7709	7775	10677	10677					-0.02700279302234776
EISGLVDSL	9	Unmodified	_EISGLVDSL_					0	0	0		ENST00000586934.5_1_19:5623180-5651054:+|nuORF	ENST00000586934.5_1_19:5623180-5651054:+|nuORF	ENST00000586934.5_1_19:5623180-5651054:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	934.6651611328125	1	932.493504	931.486227	-0.043277	-4.0356E-05	-0.64639	-0.00060276	-0.68967	-0.00064311	932.4932151017622	100.19	0.81588	100.95	100.57	101.39	0.76278					45	15	4	0	0	0	0.46038	1	38067	38067		21.747	4.8044	1	21243000			10933	13737	7710	7776	10678	10678					0.01774355078100598
EISGLVDSL	9	Unmodified	_EISGLVDSL_					0	0	0		ENST00000586934.5_1_19:5623180-5651054:+|nuORF	ENST00000586934.5_1_19:5623180-5651054:+|nuORF	ENST00000586934.5_1_19:5623180-5651054:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	932.493504	931.486227	0.010628	9.9102E-06	-0.70109	-0.00065376	-0.69046	-0.00064385	932.4932770468097	101.12	0.6582	101.12	100.74	101.39	0	0.081897	-2.5043E-05	NaN	21.747	38	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20302000			10934	13737	7710	7776							0.01774355078100598
EISGLWNEDY	10	Unmodified	_EISGLWNEDY_					0	0	0		ENST00000270720.11_1_1:1887019-1905630:-|nuORF;nc|ENSG00000142609|Q9C0B2-2|CFAP74;nc|ENSG00000142609|Q9C0B2|CFAP74;ENSG00000142609|ENST00000682832|CFAP74	ENST00000270720.11_1_1:1887019-1905630:-|nuORF	ENST00000270720.11_1_1:1887019-1905630:-|nuORF	MSMS	A375_MHC_IP_R2	2	613.2525634765625	2	613.272218	1224.52988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.32	1	111.06	110.56	111.56	0.73692								0	0	0	0.15435	1	41619	41619		6.7232	1.4263	1				10935	5316	7711	7777	10679	10679					-0.07340080215408307
EISKELNY	8	Unmodified	_EISKELNY_					0	0	0		nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A;SCN3A|p.G1054E|1|0.44|ENSG00000153253|chr2:165127863-165127863|C/T|missense_variant	nc|ENSG00000153253|Q9NY46-4|SCN3A	nc|ENSG00000153253|Q9NY46-4|SCN3A	MULTI-MSMS	A375_MHC_IP_R2	2	498.684814453125	2	498.25584	994.497126	-0.41744	-0.00020799	-0.059625	-2.9708E-05	-0.47707	-0.0002377	498.2557363520864	43.078	0.55706	43.851	43.623	44.181	0.7724					25	10	3	0	0	0	0.70783	1	16104	16104		32.305	4.6767	1	11088000			10936	6022	7712	7778	10680	10680					-0.0003424254761057455
EISKFWAIL	9	Unmodified	_EISKFWAIL_					0	0	0		ENST00000373644.4_1_10:70406043-70406097:+|nuORF	ENST00000373644.4_1_10:70406043-70406097:+|nuORF	ENST00000373644.4_1_10:70406043-70406097:+|nuORF	MSMS	A375_MHC_IP_R1	1	369.4444885253906	3	369.546337	1105.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.909	1	24.909	24.409	25.409	0								0	0	0	0.15486	1	7170	7170		7.1017	0	1				10937	11237	7713	7779	10681	10681					0.06859790516796238
EISKPARA	8	Unmodified	_EISKPARA_					0	0	0			REV__nc|ENSG00000124535|Q96S55-4|WRNIP1	REV__nc|ENSG00000124535|Q96S55-4|WRNIP1	MSMS	A375_MHC_IP_R1	1	436.2725524902344	2	436.253434	870.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.425	1	38.425	37.925	38.925	0								0	0	0	0.16876	1	13034	13034		14.582	1.0738	1		+		10938	18311	7714	7780	10682	10682					0.051889181002820806
EISLHLNAV	9	Unmodified	_EISLHLNAV_					0	0	0		nc|ENSG00000022556|Q9NX02-4|NLRP2;nc|ENSG00000022556|Q9NX02-5|NLRP2;nc|ENSG00000022556|Q9NX02-2|NLRP2;ENSG00000022556|ENST00000448584|NLRP2;ENST00000434992.1_2_X:57704441-57704846:-|nuORF;nc|ENSG00000022556|Q9NX02-3|NLRP2;ENST00000540597.5_1_19:55476735-55501561:+|nuORF	nc|ENSG00000022556|Q9NX02-4|NLRP2	nc|ENSG00000022556|Q9NX02-4|NLRP2	MULTI-MSMS	A375_MHC_IP_R1	1	996.661865234375	1	995.552022	994.544745	0.13906	0.00013844	-0.07141	-7.1092E-05	0.067649	6.7348E-05	995.5516532841297	83.711	0.40376	83.711	83.483	83.887	0					12	7	2	0	0	0	0.70307	1	30570	30570		6.7232	1.9672	1	2692300			10939	1069	7715	7781	10683	10683					0.04725456443247822
EISLHLNAV	9	Unmodified	_EISLHLNAV_					0	0	0		nc|ENSG00000022556|Q9NX02-4|NLRP2;nc|ENSG00000022556|Q9NX02-5|NLRP2;nc|ENSG00000022556|Q9NX02-2|NLRP2;ENSG00000022556|ENST00000448584|NLRP2;ENST00000434992.1_2_X:57704441-57704846:-|nuORF;nc|ENSG00000022556|Q9NX02-3|NLRP2;ENST00000540597.5_1_19:55476735-55501561:+|nuORF	nc|ENSG00000022556|Q9NX02-4|NLRP2	nc|ENSG00000022556|Q9NX02-4|NLRP2	MULTI-MATCH	A375_MHC_IP_R2	2		1	995.552022	994.544745	-0.0028426	-2.8299E-06	-0.49246	-0.00049027	-0.4953	-0.0004931	995.5516781710496	82.629	0.45352	83.372	83.195	83.648	0.74293	-0.16951	-0.00025707	NaN	6.7232	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2434800			10940	1069	7715	7781							0.04725456443247822
EISLPSGTTV	10	Unmodified	_EISLPSGTTV_					0	0	0			REV__tr|U7SLP8|U7SLP8_FUSNUV-typeATPsynthasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1	REV__tr|U7SLP8|U7SLP8_FUSNUV-typeATPsynthasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1	MSMS	A375_MHC_IP_R1	1	502.18505859375	2	502.268947	1002.52334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.05	1	65.05	64.55	65.55	0								0	0	0	0.14673	1	23546	23546		24.021	0	1		+		10941	28273	7716	7782	10684	10684					0.022180266238819968
EISMALFVS	9	Unmodified	_EISMALFVS_					0	0	0			REV__ENST00000510957.1_1_22:31050657-31050735:-|nuORF	REV__ENST00000510957.1_1_22:31050657-31050735:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	498.6560363769531	2	498.757161	995.499769	-0.31687	-0.00015804	0.76218	0.00038014	0.4453	0.0002221	498.7572498750707	112.78	0.40889	113.5	113.17	113.58	0.72459					12	7	3	0	0	0	0.17328	1	42501	42501		39.957	0	1	1324100	+		10942	25609	7717	7783	10685	10685					0.00183889585707675
EISMGYEFG	9	Unmodified	_EISMGYEFG_					0	0	0			REV__ENSG00000181192|ENST00000263035|DHTKD1	REV__ENSG00000181192|ENST00000263035|DHTKD1	MSMS	A375_MHC_IP_R2	2	516.6427001953125	2	516.720775	1031.427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.763	1	46.528	46.028	47.028	0.76519								0	0	0	0.1521	1	17118	17118		18.135	2.2878	1		+		10943	21641	7718	7784	10686	10686					-0.0874586420770811
EISRCIISSC	10	Unmodified	_EISRCIISSC_					0	0	0		ENSG00000179144|ENST00000313543|GIMAP7	ENSG00000179144|ENST00000313543|GIMAP7	ENSG00000179144|ENST00000313543|GIMAP7	MSMS	A375_MHC_IP_R1	1	555.7073364257812	2	555.767734	1109.52091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.522	1	62.522	62.022	63.022	0								0	0	0	0.1524	1	22583	22583		13.042	0.51092	1				10944	8208	7719	7785	10687	10687					-0.02946468377081146
EISRPRLKI	9	Unmodified	_EISRPRLKI_					0	0	0			REV__nc|ENSG00000147010|Q96B97-2|SH3KBP1	REV__nc|ENSG00000147010|Q96B97-2|SH3KBP1	MULTI-MSMS	A375_MHC_IP_R1	1	556.2987060546875	2	556.35094	1110.68733	-0.54324	-0.00030223	0.66605	0.00037056	0.12281	6.8323E-05	556.8516061353181	81.452	0.25324	81.452	81.353	81.607	0					8	4	2	0	0	0	0.52905	1	29765	29765		19.257	8.4331	1	674380	+		10945	19562	7720	7786	10688	10688					0.13641088905274046
EISSMTPTF	9	Unmodified	_EISSMTPTF_					0	0	0			REV__ENST00000540982.1_1_12:9550954-9555054:-|nuORF	REV__ENST00000540982.1_1_12:9550954-9555054:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	508.6922607421875	2	506.736425	1011.4583	-1.0779	-0.00054621	2.3007	0.0011658	1.2228	0.00061963	506.7402287784494	58.618	0.55928	59.367	59.083	59.643	0.74894					41	10	6	0	0	0	0.55818	1	22197	22197		16.942	1.0951	1	2601600	+		10946	25694	7721	7787	10689	10689					-0.046972911736247625
EISTGRTLV	9	Unmodified	_EISTGRTLV_					0	0	0		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	MULTI-SECPEP	A375_MHC_IP_R1	1	488.6781921386719	2	488.277106	974.53966	-0.62984	-0.00030753	2.2111	0.0010797	1.5813	0.00077212	488.27848710568543	143.17	0.15196	143.17	143.09	143.24	0					6	2	3	0	0	0	0.77834	1	54946	54946		8.5933	4.264	1	2779700			10947	2254	7722	7788	10690	10690					0.05137152580618931
EISVNLGNRDY	11	Unmodified	_EISVNLGNRDY_					0	0	0			REV__nc|ENSG00000110583|Q86UY6-3|NAA40;REV__ENST00000536939.1_1_11:63706535-63720038:+|nuORF	REV__nc|ENSG00000110583|Q86UY6-3|NAA40	MULTI-MSMS	A375_MHC_IP_R1	1	639.7093505859375	2	640.317491	1278.62043	-0.938	-0.00060062	0.38634	0.00024738	-0.55166	-0.00035324	640.3176628827014	67.424	0.66416	67.424	66.99	67.654	0					23	12	3	0	0	0	0.73078	1	24454	24454		8.1555	0.54658	1	6072900	+		10948	17632;25917	7723	7789	10691	10691					-0.0077361116711927025
EISVYWRDWRS	11	Unmodified	_EISVYWRDWRS_					0	0	0		nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-5|PKN2	nc|ENSG00000065243|Q16513-2|PKN2	nc|ENSG00000065243|Q16513-2|PKN2	MULTI-SECPEP	A375_MHC_IP_R2	2	499.1478271484375	3	499.58088	1495.72081	-0.997	-0.00049808	0.35016	0.00017493	-0.64684	-0.00032315	499.58121646335877	52.53	0.50712	53.282	53.032	53.54	0.75225					14	9	2	0	0	0	0.99883	1	19717	19717		4.7159	0.30977	1	2296300			10949	1372	7724	7790	10692	10692					-0.007219541134872998
EISWLKNDQP	10	Unmodified	_EISWLKNDQP_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-3|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-SECPEP	A375_MHC_IP_R2	2	411.28143310546875	3	410.543544	1228.6088	-0.25704	-0.00010553	0.34552	0.00014185	0.08848	3.6325E-05	410.54359411672857	18.991	0.70667	19.594	19.483	20.19	0.60308					18	13	3	0	0	0	0.91932	1	5897	5897		15.739	7.2943	1	4205500			10950	5323	7725	7791	10693	10693					0.003641918095354413
EISYADNGEIY	11	Unmodified	_EISYADNGEIY_					0	0	0		tr|U7T452|U7T452_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00257PE=4SV=1	tr|U7T452|U7T452_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00257PE=4SV=1	tr|U7T452|U7T452_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00257PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	637.681884765625	2	637.282783	1272.55101	-0.59534	-0.0003794	0.47078	0.00030002	-0.12455	-7.9376E-05	637.2828336446657	72.746	0.60851	72.746	72.423	73.031	0					23	11	3	0	0	0	0.88813	1	26451	26451		24.991	9.1438	1	2349900			10951	29993	7726	7792	10694	10694					-0.07436114906568037
EITCIKSNNA	10	Unmodified	_EITCIKSNNA_					0	0	0			REV__nc|ENSG00000103472|A6NIE6|RRN3P2	REV__nc|ENSG00000103472|A6NIE6|RRN3P2	MULTI-SECPEP	A375_MHC_IP_R1	1	364.6106872558594	3	364.849979	1091.52811	0.32061	0.00011697	-3.5064	-0.0012793	-3.1858	-0.0011623	365.18207956496923	37.595	0.30775	37.595	37.402	37.71	0					6	5	2	0	0	0	0.92957	1	12662	12662		5.7834	0.48655	1	554030	+		10952	24672	7727	7793	10695	10695					-0.013994125050203365
EITELTRFI	9	Unmodified	_EITELTRFI_					0	0	0		CON__Q9R0H5	CON__Q9R0H5	CON__Q9R0H5	MULTI-SECPEP	A375_MHC_IP_R1	1	561.22119140625	2	561.313689	1120.61282	-0.45534	-0.00025559	-0.12919	-7.2514E-05	-0.58453	-0.0003281	561.3133789059581	60.031	0.61093	60.031	59.752	60.363	0					16	11	2	0	0	0	0.58271	1	21554	21554		26.884	16.06	1	1143100		+	10953	635	7728	7794	10696	10696					0.05734281303261923
EITEMHEFDT	10	Unmodified	_EITEMHEFDT_					0	0	0			REV__nc|ENSG00000105939|Q7Z2W4-5|ZC3HAV1	REV__nc|ENSG00000105939|Q7Z2W4-5|ZC3HAV1	MULTI-SECPEP	A375_MHC_IP_R1	1	626.1633911132812	2	626.263536	1250.51252	-0.37695	-0.00023607	1.9841	0.0012426	1.6071	0.0010065	626.2644117914638	106.57	0.4084	106.57	106.37	106.78	0					11	7	2	0	0	0	0.93799	1	39187	39187		6.7232	0.51738	1	811740	+		10954	17419	7729	7795	10697	10697					-0.10271743812745626
EITESFVDY	9	Unmodified	_EITESFVDY_					0	0	0		nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B	nc|ENSG00000054523|O60333-2|KIF1B	nc|ENSG00000054523|O60333-2|KIF1B	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1502075195312	2	551.750587	1101.48662	-0.74509	-0.0004111	0.6417	0.00035406	-0.10339	-5.7046E-05	551.7506602589214	108.58	0.8674	109.33	108.91	109.78	0.74684					38	16	4	0	0	0	0.39388	1	40966	40966		32.305	0	1	6800100			10955	1260	7730	7796	10698	10698					-0.06006269992712987
EITETFKSRIS	11	Unmodified	_EITETFKSRIS_					0	0	0		ENSG00000278057|ENST00000617225|TEX28	ENSG00000278057|ENST00000617225|TEX28	ENSG00000278057|ENST00000617225|TEX28	MSMS	A375_MHC_IP_R1	1	655.7564086914062	2	655.851167	1309.68778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.49	1	114.49	113.99	114.99	0								0	0	0	0.16179	1	41990	41990		9.3831	0.63772	1				10956	10034	7731	7797	10699	10699					0.04532419043812297
EITHFEKEQSL	11	Unmodified	_EITHFEKEQSL_					0	0	0		MAP3K19|p.G327E|1|0.69|ENSG00000176601|chr2:134987892-134987892|C/T|missense_variant	MAP3K19|p.G327E|1|0.69|ENSG00000176601|chr2:134987892-134987892|C/T|missense_variant	MAP3K19|p.G327E|1|0.69|ENSG00000176601|chr2:134987892-134987892|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	681.2409057617188	2	680.840799	1359.66705	-0.44901	-0.0003057	0.04202	2.8609E-05	-0.40699	-0.0002771	680.8409175657416	111.66	0.61427	112.38	112.05	112.66	0.72459					25	11	3	0	0	0	0.73984	1	42062	42062		23.79	0	1	5252000			10957	14349	7732	7798	10700	10700					0.0015982866416379693
EITHSNPQDY	10	Unmodified	_EITHSNPQDY_					0	0	0			REV__LAMB4|p.N1301Mfs*46|1|0.33|ENSG00000091128|chr7:108052113-108052113|A/-|frameshift_variant	REV__LAMB4|p.N1301Mfs*46|1|0.33|ENSG00000091128|chr7:108052113-108052113|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	601.653564453125	2	602.267467	1202.52038	-0.60036	-0.00036157	0.32109	0.00019338	-0.27927	-0.00016819	602.2673305813267	41.726	0.46161	41.726	41.47	41.932	0					13	8	2	0	0	0	0.90513	1	14357	14357		12.241	12.241	1	2147200	+		10958	16943	7733	7799	10701	10701					-0.07277848500939399
EITHYYASY	9	Unmodified	_EITHYYASY_					0	0	0			REV__CON__Q9QWL7	REV__CON__Q9QWL7	MSMS	A375_MHC_IP_R1	1	573.6957397460938	2	573.758746	1145.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.147	1	68.147	67.647	68.647	0								0	0	0	0.15283	1	24701	24701		16.942	0	1		+	+	10959	15903	7734	7800	10702	10702					-0.06399144035935933
EITMPNQMV	9	Unmodified	_EITMPNQMV_					0	0	0		ENSG00000102287|ENST00000370328|GABRE;nc|ENSG00000102287|P78334-2|GABRE;GABRE|p.E165K|1|0.52|ENSG00000102287|chrX:151962493-151962493|C/T|missense_variant	ENSG00000102287|ENST00000370328|GABRE	ENSG00000102287|ENST00000370328|GABRE	MULTI-SECPEP	A375_MHC_IP_R2	2	531.1570434570312	2	531.751553	1061.48855	-0.73506	-0.00039087	-4.3831	-0.0023307	-5.1182	-0.0027216	531.7483302208624	48.732	0.60973	49.489	49.08	49.69	0.75737					15	11	2	0	0	0	0.67483	1	18316	18316		10.074	0	1	1873100			10960	2369	7735	7801	10703	10703					-0.03973255780101681
EITNLSVFN	9	Unmodified	_EITNLSVFN_					0	0	0			REV__tr|U7SFY3|U7SFY3_FUSNURibosomalRNAlargesubunitmethyltransferaseHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmHPE=3SV=1	REV__tr|U7SFY3|U7SFY3_FUSNURibosomalRNAlargesubunitmethyltransferaseHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmHPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.168701171875	2	518.769114	1035.52368	-0.7478	-0.00038794	2.8561	0.0014816	2.1083	0.0010937	518.7690838948878	107.31	1.0689	108.06	107.69	108.76	0.75436					64	20	5	0	0	0	0.24548	1	40493	40493		52.268	2.3353	1	9614900	+		10961	28175	7736	7802	10704	10704					0.007334463437246086
EITNRGLY	8	Unmodified	_EITNRGLY_					0	0	0			REV__tr|U7T765|U7T765_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00131PE=4SV=1	REV__tr|U7T765|U7T765_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00131PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	483.6554260253906	2	483.256174	964.497795	-0.1312	-6.3404E-05	-1.9032	-0.00091974	-2.0344	-0.00098315	483.25506526991654	54.17	0.75779	54.17	53.809	54.567	0					20	14	2	0	0	0	0.70206	1	19325	19325		34.102	1.3168	1	2153700	+		10962	28879	7737	7803	10705	10705					0.014125968920893683
EITPCLKLRS	10	Unmodified	_EITPCLKLRS_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MSMS	A375_MHC_IP_R2	2	580.6876831054688	2	580.328816	1158.64308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.71	1	127.98	127.48	128.48	0.26593								0	0	0	0.15353	1	50118	50118		9.3831	2.0939	1				10963	9666	7738	7804	10706	10706					0.07010316696778318
EITRLRTLL	9	Unmodified	_EITRLRTLL_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP;nc|ENSG00000133030|Q6WCQ1-3|MPRIP;nc|ENSG00000133030|Q6WCQ1|MPRIP;nc|ENSG00000133030|Q6WCQ1-2|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-SECPEP	A375_MHC_IP_R2	2	558.2501831054688	2	557.850773	1113.68699	-0.95605	-0.00053333	-0.090006	-5.021E-05	-1.0461	-0.00058354	557.85070333154	72.087	0.55537	72.822	72.618	73.174	0.73421					24	10	3	0	0	0	0.73008	1	27352	27352		17.113	2.2746	1	4509900			10964	4476	7739	7805	10707	10707					0.13469669185428756
EITSIEHNRDL	11	Unmodified	_EITSIEHNRDL_					0	0	0		ENST00000484594.5_1_2:212426591-213403254:-|nuORF;nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4;ENST00000459774.1_1_2:212989446-212989798:-|nuORF	ENST00000484594.5_1_2:212426591-213403254:-|nuORF	ENST00000484594.5_1_2:212426591-213403254:-|nuORF	MSMS	A375_MHC_IP_R1	1	663.922607421875	2	663.836048	1325.65754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.185	1	84.185	83.685	84.685	0								0	0	0	0.16124	1	30828	30828		12.241	3.4953	1				10965	8166	7740	7806	10708	10708					0.007740603786032807
EITVTLQCA	9	Unmodified	_EITVTLQCA_					0	0	0		ENSG00000139531|ENST00000266971|SUOX	ENSG00000139531|ENST00000266971|SUOX	ENSG00000139531|ENST00000266971|SUOX	MSMS	A375_MHC_IP_R1	1	489.1810302734375	2	489.252243	976.489932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129	1	129	128.5	129.5	0								0	0	0	0.12568	1	49573	49573		34.102	1.9855	1				10966	5084	7741	7807	10709	10709					0.00074701580308556
EITVWEFQ	8	Unmodified	_EITVWEFQ_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	A375_MHC_IP_R1	1	526.6746215820312	2	526.258382	1050.50221	-0.85396	-0.0004494	-0.59669	-0.00031401	-1.4506	-0.00076341	526.2580599910688	67.797	1.0677	67.797	66.99	68.057	0					28	20	3	0	0	0	0.7754	1	24512	24512		11.64	1.4569	1	2977300	+		10967	17912	7742	7808	10710	10710					-0.021019386850184674
EITYWDSV	8	Unmodified	_EITYWDSV_					0	0	0			REV__ENST00000372972.6_1_X:100076572-100077334:+|nuORF	REV__ENST00000372972.6_1_X:100076572-100077334:+|nuORF	MSMS	A375_MHC_IP_R1	1	506.6957092285156	2	506.73474	1011.45493	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.815	1	56.815	56.315	57.315	0								0	0	0	0.16876	1	20361	20361		8.5933	2.3875	1		+		10968	24080	7743	7809	10711	10711					-0.05034217955994791
EIVEISKSF	9	Unmodified	_EIVEISKSF_					0	0	0			REV__ENST00000529239.1_1_8:61850552-61850903:-|nuORF	REV__ENST00000529239.1_1_8:61850552-61850903:-|nuORF	MSMS	A375_MHC_IP_R2	2	526.3622436523438	2	526.28714	1050.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.63	1	84.369	83.869	84.869	0.73962								0	0	0	0.1008	1	31786	31786		41.84	0	1		+		10969	18679	7744	7810	10712	10712					0.036469035205982436
EIVELLEHNRL	11	Unmodified	_EIVELLEHNRL_					0	0	0		tr|U7T2H3|U7T2H3_FUSNUMagnesiumtransporterMgtEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00566PE=3SV=1	tr|U7T2H3|U7T2H3_FUSNUMagnesiumtransporterMgtEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00566PE=3SV=1	tr|U7T2H3|U7T2H3_FUSNUMagnesiumtransporterMgtEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00566PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	455.6483154296875	3	455.589265	1363.74596	-0.62449	-0.00028451	0.46439	0.00021157	-0.1601	-7.294E-05	455.5893154712482	59.246	0.65788	59.993	59.691	60.349	0.74714					28	12	3	0	0	0	0.73439	1	22481	22481		4.7159	1.8726	1	1103600			10970	29932	7745	7811	10713	10713					0.07864100689107545
EIVEPCLIY	9	Unmodified	_EIVEPCLIY_					0	0	0			REV__MAN1A2|p.R531C|1|0.34|ENSG00000198162|chr1:117499468-117499468|C/T|missense_variant	REV__MAN1A2|p.R531C|1|0.34|ENSG00000198162|chr1:117499468-117499468|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	539.6758422851562	2	539.778093	1077.54163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.943	1	71.677	71.177	72.177	0.73421								0	0	0	0.15486	1	26902	26902		12.532	0.29089	1		+		10971	26980	7746	7812	10714	10714					0.005964452742091453
EIVHFSIKY	9	Unmodified	_EIVHFSIKY_					0	0	0			REV__ENST00000565424.2_1_16:47581649-47581931:+|nuORF	REV__ENST00000565424.2_1_16:47581649-47581931:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	568.7103271484375	2	568.310949	1134.60735	-0.35572	-0.00020216	0.12461	7.0818E-05	-0.23111	-0.00013134	568.3108814730382	77.406	0.7094	77.406	76.93	77.639	0					30	13	4	0	0	0	0.46045	1	28204	28204		29.082	0	1	10187000	+		10972	26229	7747	7813	10715	10715					0.045426025114238655
EIVHFSIKY	9	Unmodified	_EIVHFSIKY_					0	0	0			REV__ENST00000565424.2_1_16:47581649-47581931:+|nuORF	REV__ENST00000565424.2_1_16:47581649-47581931:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	568.7108154296875	2	568.310949	1134.60735	-0.34786	-0.00019769	-0.048233	-2.7412E-05	-0.39609	-0.0002251	568.3108401178923	76.57	0.66135	77.31	76.943	77.604	0.74052					31	12	4	0	0	0	0.28216	1	29040	29040		34.402	13.987	1	8985400	+		10973	26229	7747	7813	10716	10716					0.045426025114238655
EIVMEDAAIP	10	Unmodified	_EIVMEDAAIP_					0	0	0			REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	MSMS	A375_MHC_IP_R2	2	544.2237548828125	2	544.270632	1086.52671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.33	1	103.09	102.59	103.59	0.76428								0	0	0	0.14983	1	38774	38774		18.146	3.5647	1		+		10974	19174	7748	7814	10717	10717					-0.01309046593792118
EIVQNTQETAP	11	Unmodified	_EIVQNTQETAP_					0	0	0			REV__ENST00000475515.1_1_2:176794697-176796849:-|nuORF	REV__ENST00000475515.1_1_2:176794697-176796849:-|nuORF	MSMS	A375_MHC_IP_R2	2	615.2340698242188	2	615.304049	1228.59355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.153	1	73.888	73.388	74.388	0.73541								0	0	0	0.14659	1	27768	27768		22.658	1.1211	1		+		10975	19417	7749	7815	10718	10718					-0.01160719778317798
EIVRGYKWAEY	11	Unmodified	_EIVRGYKWAEY_					0	0	0		nc|ENSG00000054148|Q9NRX4-2|PHPT1;ENSG00000054148|ENST00000247665|PHPT1;ENST00000492540.5_1_9:139743852-139744679:+|nuORF	nc|ENSG00000054148|Q9NRX4-2|PHPT1	nc|ENSG00000054148|Q9NRX4-2|PHPT1	MSMS	A375_MHC_IP_R1	1	707.29833984375	2	707.361702	1412.70885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.818	1	94.818	94.318	95.318	0								0	0	0	0.16249	1	34851	34851		5.7319	1.203	1				10976	1255	7750	7816	10719	10719					0.019004291433702747
EIVTLNWSY	9	Unmodified	_EIVTLNWSY_					0	0	0			REV__ENSG00000196652|ENST00000326775|ZKSCAN5	REV__ENSG00000196652|ENST00000326775|ZKSCAN5	MULTI-MSMS	A375_MHC_IP_R2	2	562.8003540039062	2	562.784764	1123.55498	-0.54698	-0.00030783	-0.34536	-0.00019436	-0.89234	-0.00050219	562.7847545261651	102.72	0.81416	103.49	103.18	103.99	0.76428					21	15	2	0	0	0	0.55818	1	39046	39046		16.942	1.0951	1	1571100	+		10977	22217	7751	7817	10720	10720					-0.0018598062217733968
EIVWTYMK	8	Unmodified	_EIVWTYMK_					0	0	0		ENST00000419040.6_2_6:90539686-90564595:+|nuORF	ENST00000419040.6_2_6:90539686-90564595:+|nuORF	ENST00000419040.6_2_6:90539686-90564595:+|nuORF	MSMS	A375_MHC_IP_R1	1	357.4492492675781	3	357.184411	1068.5314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.082	1	79.082	78.582	79.582	0								0	0	0	0.16876	1	28865	28865		0.40072	0	1				10978	11715	7752	7818	10721	10721					-0.00012117660367039207
EIWCDELV	8	Unmodified	_EIWCDELV_					0	0	0			REV__ENST00000493544.1_1_2:242054361-242072488:-|nuORF	REV__ENST00000493544.1_1_2:242054361-242072488:-|nuORF	MSMS	A375_MHC_IP_R1	1	503.7052307128906	2	503.731143	1005.44773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.02	1	84.02	83.52	84.52	0								0	0	0	0.16876	1	30763	30763		6.3541	0	1		+		10979	17907	7753	7819	10722	10722					-0.05477273828068974
EIWEYSFYYFF	11	Unmodified	_EIWEYSFYYFF_					0	0	0		ENST00000262225.7_1_12:124081454-124081643:+|nuORF	ENST00000262225.7_1_12:124081454-124081643:+|nuORF	ENST00000262225.7_1_12:124081454-124081643:+|nuORF	MSMS	A375_MHC_IP_R2	2	797.369140625	2	797.350468	1592.68638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.03	1	130.25	129.75	130.75	0.2142								0	0	0	0.16334	1	51108	51108		1.3295	0.13619	1				10980	10296	7754	7820	10723	10723					-0.08625215044958168
EIWMEESKQVH	11	Unmodified	_EIWMEESKQVH_					0	0	0			REV__ENSG00000170160|ENST00000399273|CCDC144A	REV__ENSG00000170160|ENST00000399273|CCDC144A	MSMS	A375_MHC_IP_R1	1	708.3373413085938	2	708.334827	1414.6551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.22	1	123.22	122.72	123.72	0								0	0	0	0.1624	1	46012	46012		6.2058	0.47393	1		+		10981	20969	7755	7821	10724	10724					-0.03564111350692656
EIWRAVQGHP	10	Unmodified	_EIWRAVQGHP_					0	0	0		ENST00000366911.9_1_6:161554714-161554756:-|nuORF	ENST00000366911.9_1_6:161554714-161554756:-|nuORF	ENST00000366911.9_1_6:161554714-161554756:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	398.6034240722656	3	398.21224	1191.61489	-0.13623	-5.4247E-05	-0.90207	-0.00035922	-1.0383	-0.00041346	398.21193637157336	27.951	0.35546	28.63	28.401	28.757	0.67857					11	6	2	0	0	0	0.69306	1	9626	9626		8.4443	0.96724	1	3256500			10982	11068	7756	7822	10725	10725					0.026747548317189285
EIWSTSNY	8	Unmodified	_EIWSTSNY_					0	0	0			REV__ENST00000558906.5_1_15:50152393-50311102:-|nuORF	REV__ENST00000558906.5_1_15:50152393-50311102:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	500.1978454589844	2	500.224539	998.434526	-0.43922	-0.00021971	2.099	0.0010499	1.6597	0.00083024	500.2246536064247	58.404	0.66119	58.404	58.024	58.685	0					27	12	3	0	0	0	0.45507	1	20982	20982		50.855	0	1	3480700	+		10983	17297	7757	7823	10726	10726					-0.06475388615808697
EIWSTSNY	8	Unmodified	_EIWSTSNY_					0	0	0			REV__ENST00000558906.5_1_15:50152393-50311102:-|nuORF	REV__ENST00000558906.5_1_15:50152393-50311102:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	500.6238098144531	2	500.224539	998.434526	-0.85295	-0.00042667	0.22177	0.00011093	-0.63118	-0.00031573	500.22462003852894	57.841	1.0142	58.59	58.069	59.083	0.74894					24	19	2	0	0	0	0.50167	1	21877	21877		60.39	0	1	1678000	+		10984	17297	7757	7823	10727	10727					-0.06475388615808697
EIYDVHPLK	9	Unmodified	_EIYDVHPLK_					0	0	0			REV__ENSG00000169174|ENST00000302118|PCSK9	REV__ENSG00000169174|ENST00000302118|PCSK9	MULTI-SECPEP	A375_MHC_IP_R2	2	372.5709533691406	3	371.86948	1112.58661	0.14657	5.4505E-05	-0.48768	-0.00018135	-0.34111	-0.00012685	371.8691930442445	38.779	0.2569	39.553	39.351	39.607	0.77451					5	4	2	0	0	0	0.80535	1	14216	14216		4.5289	1.2092	1	877150	+		10985	20913	7758	7824	10728	10728					0.03482012131757983
EIYFRKEK	8	Unmodified	_EIYFRKEK_					0	0	0		ENSG00000164134|ENST00000296543|NAA15	ENSG00000164134|ENST00000296543|NAA15	ENSG00000164134|ENST00000296543|NAA15	MULTI-SECPEP	A375_MHC_IP_R1	1	372.2989196777344	3	371.541475	1111.60259	0.31725	0.00011787	-0.31028	-0.00011528	0.0069697	2.5895E-06	371.5413946639145	57.802	0.50593	57.802	57.518	58.024	0					14	9	2	0	0	0	0.972	1	20685	20685		7.609	1.8255	1	1576900			10986	6788	7759	7825	10729	10729					0.051257183686630015
EIYNESLFD	9	Unmodified	_EIYNESLFD_					0	0	0		ENST00000487440.5_1_3:47281337-47324087:-|nuORF;nc|ENSG00000088727|Q9HAQ2-2|KIF9;ENSG00000088727|ENST00000684063|KIF9;ENST00000484629.1_1_3:47307469-47316817:-|nuORF	ENST00000487440.5_1_3:47281337-47324087:-|nuORF	ENST00000487440.5_1_3:47281337-47324087:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	565.673828125	2	565.256037	1128.49752	-0.43992	-0.00024867	0.17338	9.8001E-05	-0.26654	-0.00015067	565.2563855170346	95.818	0.50341	95.818	95.515	96.018	0					16	9	2	0	0	0	0.58271	1	35246	35246		20.454	0	1	700590			10987	1894	7760	7826	10730	10730					-0.06158867618410113
EIYNFKRGS	9	Unmodified	_EIYNFKRGS_					0	0	0		SIRPB2|p.P93S|1|0.43|ENSG00000196209|chr20:1479874-1479874|G/A|missense_variant;ENST00000609796.1_1_20:1460117-1472086:-|nuORF;ENSG00000196209|ENST00000359801|SIRPB2	SIRPB2|p.P93S|1|0.43|ENSG00000196209|chr20:1479874-1479874|G/A|missense_variant	SIRPB2|p.P93S|1|0.43|ENSG00000196209|chr20:1479874-1479874|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	556.69775390625	2	557.288005	1112.56146	-0.84592	-0.00047142	-0.038582	-2.1501E-05	-0.8845	-0.00049292	557.2879703103288	55.41	0.91567	56.161	55.83	56.745	0.75075					34	17	3	0	0	0	0.65246	1	21095	21095		10.824	0.75	1	6371800			10988	9011	7761	7827	10731	10731					0.009679573292032728
EIYQKLTF	8	Unmodified	_EIYQKLTF_					0	0	0		nc|ENSG00000154654|O15394-2|NCAM2;ENSG00000154654|ENST00000400546|NCAM2	nc|ENSG00000154654|O15394-2|NCAM2	nc|ENSG00000154654|O15394-2|NCAM2	MULTI-SECPEP	A375_MHC_IP_R2	2	521.6229858398438	2	521.2844	1040.55425	-0.52231	-0.00027227	-0.025068	-1.3068E-05	-0.54737	-0.00028534	521.2844925321554	93.243	0.50777	93.982	93.646	94.154	0.73902					14	9	2	0	0	0	0.96266	1	35333	35333		7.2892	3.6927	1	1114800			10989	6098	7762	7828	10732	10732					0.035592247287468126
EKAKLKYYK	9	Unmodified	_EKAKLKYYK_					0	0	0		ENSG00000132467|ENST00000254803|UTP3	ENSG00000132467|ENST00000254803|UTP3	ENSG00000132467|ENST00000254803|UTP3	MSMS	A375_MHC_IP_R1	1	390.945068359375	3	390.900891	1169.68084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.4	1	20.4	19.9	20.9	0								0	0	0	0.15306	1	5234	5234		16.566	0	1				10990	4412	7763	7829	10733	10733					0.10279150953874705
EKAKLSVGW	9	Unmodified	_EKAKLSVGW_					0	0	0		ENSG00000172769|ENST00000641865|OR5B3	ENSG00000172769|ENST00000641865|OR5B3	ENSG00000172769|ENST00000641865|OR5B3	MULTI-SECPEP	A375_MHC_IP_R2	2	509.6890869140625	2	509.290017	1016.56548	-0.54853	-0.00027936	-0.15781	-8.0373E-05	-0.70634	-0.00035973	509.2897993004107	46.979	0.66139	47.741	47.412	48.073	0.76128					20	12	2	0	0	0	0.38578	1	17602	17602		41.84	9.0539	1	2917900			10991	7733	7764	7830	10734	10734					0.05786046822890967
EKAKSLEEF	9	Unmodified	_EKAKSLEEF_					0	0	0		tr|U7SEE9|U7SEE9_FUSNU2',3'-cyclic-nucleotide3'-phosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02343PE=4SV=1	tr|U7SEE9|U7SEE9_FUSNU2',3'-cyclic-nucleotide3'-phosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02343PE=4SV=1	tr|U7SEE9|U7SEE9_FUSNU2',3'-cyclic-nucleotide3'-phosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02343PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	361.2569580078125	3	360.85724	1079.54989	-0.49806	-0.00017973	-0.47414	-0.0001711	-0.97221	-0.00035083	360.8570660355607	23.428	0.45495	24.058	23.828	24.283	0.63014					16	8	3	0	0	0	0.69507	1	7557	7557		9.544	7.2612	1	7373400			10992	29383	7765	7831	10735	10735					0.013297155151803963
EKAKVRKRP	9	Unmodified	_EKAKVRKRP_					0	0	0			REV__GBP6|p.G453R|1|0.39|ENSG00000183347|chr1:89382868-89382868|G/A|missense_variant	REV__GBP6|p.G453R|1|0.39|ENSG00000183347|chr1:89382868-89382868|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	371.2562561035156	3	371.24013	1110.69856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.7	1	31.7	31.2	32.2	0								0	0	0	0.15486	1	10172	10172		0.96228	0	1		+		10993	26669	7766	7832	10736	10736					0.14763910999408836
EKALEKEE	8	Unmodified	_EKALEKEE_					0	0	0		nc|ENSG00000165837|Q5W0A0-2|ERICH6B;ENSG00000165837|ENST00000298738|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	MULTI-SECPEP	A375_MHC_IP_R2	2	488.6710510253906	2	488.253297	974.492041	-1.1069	-0.00054047	0.50897	0.0002485	-0.59797	-0.00029196	488.25355300618224	33.723	0.55599	34.475	34.247	34.803	0.75225					21	10	3	0	0	0	0.87643	1	12039	12039		25.399	0	1	5645600			10994	6994	7767	7833	10737	10737					0.0037745358976053467
EKAMVKYVTE	10	Unmodified	_EKAMVKYVTE_					0	0	0		tr|U7T2Y3|U7T2Y3_FUSNUDhaGproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00503PE=4SV=1	tr|U7T2Y3|U7T2Y3_FUSNUDhaGproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00503PE=4SV=1	tr|U7T2Y3|U7T2Y3_FUSNUDhaGproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00503PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	399.7464599609375	3	399.877647	1196.61111	-0.37011	-0.000148	0.84458	0.00033773	0.47446	0.00018973	399.8785732503499	23.223	0.1516	23.853	23.777	23.928	0.63014					4	2	2	0	0	0	0.70027	1	7413	7413		12.175	0.65687	1	577110			10995	29949	7768	7834	10738	10738					0.020669042229656043
EKANKDRVF	9	Unmodified	_EKANKDRVF_					0	0	0		ENSG00000088179|ENST00000263708|PTPN4	ENSG00000088179|ENST00000263708|PTPN4	ENSG00000088179|ENST00000263708|PTPN4	MULTI-SECPEP	A375_MHC_IP_R2	2	554.21337890625	2	553.80128	1105.58801	-1.0992	-0.00060874	0.023102	1.2794E-05	-1.0761	-0.00059595	553.8013433027094	38.197	0.55945	38.971	38.791	39.351	0.77451					22	10	3	0	0	0	0.4261	1	14016	14016		37.974	18.612	1	6435700			10996	1884	7769	7835	10739	10739					0.03943646220500341
EKCPSRQYQ	9	Unmodified	_EKCPSRQYQ_					0	0	0			REV__ENSG00000033122|ENST00000651989|LRRC7	REV__ENSG00000033122|ENST00000651989|LRRC7	MSMS	A375_MHC_IP_R1	1	380.1138000488281	3	380.181841	1137.52369	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.783	1	95.783	95.283	96.283	0								0	0	0	0.15486	1	35205	35205		2.2828	0	1		+		10997	16306	7770	7836	10740	10740					-0.03956876927941266
EKDGILYY	8	Unmodified	_EKDGILYY_					0	0	0			REV__tr|U7SUE4|U7SUE4_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01395PE=4SV=1	REV__tr|U7SUE4|U7SUE4_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01395PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	501.1780090332031	2	500.752933	999.491313	-0.25325	-0.00012682	0.14352	7.187E-05	-0.10973	-5.4947E-05	500.75289134122215	88.853	1.1168	88.853	88.409	89.526	0					63	21	5	0	0	0	0.33238	1	32596	32596		56.177	1.4035	1	20322000	+		10998	28550	7771	7837	10741	10741					-0.008453410593006083
EKDIEFIY	8	Unmodified	_EKDIEFIY_					0	0	0		chr17:78873919-78874029|427|25.12|0.4|5.96|-|ENST00000585421|TIMP2,TIMP2;ENSG00000035862|ENST00000262768|TIMP2	chr17:78873919-78874029|427|25.12|0.4|5.96|-|ENST00000585421|TIMP2,TIMP2	chr17:78873919-78874029|427|25.12|0.4|5.96|-|ENST00000585421|TIMP2,TIMP2	MSMS	A375_MHC_IP_R2	2	528.6558837890625	2	528.76604	1055.51753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.57	1	97.326	96.826	97.826	0.75586								0	0	0	0.16876	1	36663	36663		32.305	3.2239	1				10999	447	7772	7838	10742	10742					-0.00801071887804028
EKDIQDGY	8	Unmodified	_EKDIQDGY_					0	0	0			REV__ENSG00000154997|ENST00000388975|SEPTIN14	REV__ENSG00000154997|ENST00000388975|SEPTIN14	MULTI-MSMS	A375_MHC_IP_R2	2	484.62176513671875	2	484.221997	966.429441	-0.89529	-0.00043352	-0.18172	-8.7995E-05	-1.077	-0.00052152	484.221875360213	60.948	0.7063	61.693	61.364	62.07	0.74503					23	13	2	0	0	0	0.74945	1	23074	23074		20.454	0	1	8851700	+		11000	19910	7773	7839	10743	10743					-0.05511692478432906
EKDQHHPKHHH	11	Unmodified	_EKDQHHPKHHH_					0	0	0		ENST00000535919.1_1_11:95512769-95516347:-|nuORF;nc|ENSG00000077458|Q5HYJ3-3|FAM76B;nc|ENSG00000077458|Q5HYJ3-2|FAM76B;ENSG00000077458|ENST00000358780|FAM76B	ENST00000535919.1_1_11:95512769-95516347:-|nuORF	ENST00000535919.1_1_11:95512769-95516347:-|nuORF	MSMS	A375_MHC_IP_R1	1	715.34521484375	2	715.34524	1428.67593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.749	1	90.749	90.249	91.249	0								0	0	0	0.16249	1	33351	33351		5.7319	2.9967	1				11001	1657	7774	7840	10744	10744					-0.021263401361693468
EKDRFYPTEL	10	Unmodified	_EKDRFYPTEL_					0	0	0			REV__CON__A2I7N1	REV__CON__A2I7N1	MSMS	A375_MHC_IP_R2	2	433.28485107421875	3	433.218949	1296.63502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.47	1	110.22	109.72	110.72	0.74684								0	0	0	0.15541	1	41311	41311		1.5923	0.57871	1		+	+	11002	15837	7775	7841	10745	10745					-0.0014353901899539778
EKDRRTKRT	9	Unmodified	_EKDRRTKRT_					0	0	0			REV__BSN|p.A1071T|1|0.27|ENSG00000164061|chr3:49652767-49652767|G/A|missense_variant	REV__BSN|p.A1071T|1|0.27|ENSG00000164061|chr3:49652767-49652767|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	396.9559631347656	3	397.230182	1188.66872	-0.40401	-0.00016048	0.55284	0.0002196	0.14883	5.9119E-05	397.2304038787926	24.34	0.35523	24.983	24.806	25.161	0.64368					9	6	2	0	0	0	0.78353	1	7972	7972		3.5871	0	1	2834500	+		11003	15535	7776	7842	10746	10746					0.08192927263417005
EKDRSLRRI	9	Unmodified	_EKDRSLRRI_					0	0	0		ENSG00000116329|ENST00000234961|OPRD1	ENSG00000116329|ENST00000234961|OPRD1	ENSG00000116329|ENST00000234961|OPRD1	MULTI-SECPEP	A375_MHC_IP_R1	1	391.9667053222656	3	391.566794	1171.67855	-0.099163	-3.8829E-05	0.094522	3.7012E-05	-0.0046408	-1.8172E-06	391.56683361666535	23.965	0.81339	23.965	23.483	24.296	0					22	15	2	0	0	0	0.7713	1	6696	6696		5.4027	0	1	26426000			11004	3395	7777	7843	10747	10747					0.09958115268818801
EKDTNKKAQN	10	Unmodified	_EKDTNKKAQN_					0	0	0			REV__HYDIN|p.R1516K|1|0.26|ENSG00000157423|chr16:70979005-70979005|C/T|missense_variant	REV__HYDIN|p.R1516K|1|0.26|ENSG00000157423|chr16:70979005-70979005|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	588.2289428710938	2	588.304384	1174.59421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.66	1	102.66	102.16	103.16	0								0	0	0	0.1524	1	37729	37729		13.042	2.2185	1		+		11005	26773	7778	7844	10748	10748					0.01390119661391509
EKEEGLPEDE	10	Unmodified	_EKEEGLPEDE_					0	0	0		ENSG00000168159|ENST00000305943|RNF187	ENSG00000168159|ENST00000305943|RNF187	ENSG00000168159|ENST00000305943|RNF187	MULTI-MSMS	A375_MHC_IP_R1	1	587.7022705078125	2	587.75914	1173.50373	-0.29893	-0.0001757	0.92617	0.00054436	0.62723	0.00036866	587.7596451257067	25.332	0.40892	25.332	25.204	25.613	0					14	7	2	0	0	0	0.69833	1	7345	7345		13.042	1.4022	1	3642300			11006	7271	7779	7845	10749	10749					-0.07608394177532318
EKEEQIKIFQE	11	Unmodified	_EKEEQIKIFQE_					0	0	0		ENSG00000187268|ENST00000380625|FAM9C	ENSG00000187268|ENST00000380625|FAM9C	ENSG00000187268|ENST00000380625|FAM9C	MULTI-SECPEP	A375_MHC_IP_R1	1	711.5404663085938	2	710.869556	1419.72456	-0.60332	-0.00042888	-0.52015	-0.00036976	-1.1235	-0.00079864	710.8692320198587	99.579	0.60715	99.579	99.218	99.825	0					30	11	4	0	0	0	0.98303	1	36579	36579		12.873	12.873	1	9132000			11007	8820	7780	7846	10750	10750					0.03148670869677517
EKEEQIKIFQE	11	Unmodified	_EKEEQIKIFQE_					0	0	0		ENSG00000187268|ENST00000380625|FAM9C	ENSG00000187268|ENST00000380625|FAM9C	ENSG00000187268|ENST00000380625|FAM9C	MULTI-SECPEP	A375_MHC_IP_R2	2	711.269775390625	2	710.869556	1419.72456	-0.61401	-0.00043648	-0.13374	-9.5072E-05	-0.74775	-0.00053155	710.8694336238126	98.98	0.66079	99.739	99.403	100.06	0.75977					29	12	3	0	0	0	0.98303	1	37491	37491		17.443	17.443	1	8679500			11008	8820	7780	7846	10751	10751					0.03148670869677517
EKEKAKEYF	9	Unmodified	_EKEKAKEYF_					0	0	0		tr|U7SKQ7|U7SKQ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02109PE=4SV=1	tr|U7SKQ7|U7SKQ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02109PE=4SV=1	tr|U7SKQ7|U7SKQ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02109PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	587.2337646484375	2	586.303321	1170.59209	0.092487	5.4225E-05	-1.7706	-0.0010381	-1.6782	-0.00098391	586.3020389284256	127.46	0.30444	127.46	127.32	127.62	0					11	5	3	0	0	0	0.67152	1	48915	48915		9.3831	1.473	1	4506500			11009	29480	7781	7847	10752	10752					0.013616909235679486
EKEKLTLLY	9	Unmodified	_EKEKLTLLY_					0	0	0			REV__tr|U7SJP8|U7SJP8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02046PE=4SV=1	REV__tr|U7SJP8|U7SJP8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02046PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	379.9569396972656	3	379.556902	1135.64888	0.16025	6.0825E-05	-0.51968	-0.00019725	-0.35943	-0.00013642	379.55664682643595	43.061	0.45575	43.833	43.623	44.079	0.7724					13	8	2	0	0	0	0.46357	1	16030	16030		21.59	2.2282	1	3122100	+		11010	28242	7782	7848	10753	10753					0.08647738480090084
EKEKLTLLY	9	Unmodified	_EKEKLTLLY_					0	0	0			REV__tr|U7SJP8|U7SJP8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02046PE=4SV=1	REV__tr|U7SJP8|U7SJP8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02046PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	379.556902	1135.64888	0.16025	6.0825E-05	-0.51968	-0.00019725	-0.35943	-0.00013642	379.55664682643595	43.061	0.45575	43.833	43.623	44.079	0.7724	-0.032376	-0.0003488	NaN	21.59	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3122100	+		11011	28242	7782	7848							0.08647738480090084
EKELEDLFH	9	Unmodified	_EKELEDLFH_					0	0	0		ENST00000565691.5_2_16:84012059-84014656:+|nuORF;ENSG00000103154|ENST00000305202|NECAB2	ENST00000565691.5_2_16:84012059-84014656:+|nuORF	ENST00000565691.5_2_16:84012059-84014656:+|nuORF	MSMS	A375_MHC_IP_R1	1	387.1922912597656	3	387.192511	1158.5557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.86	1	141.86	141.36	142.36	0								0	0	0	0.15486	1	54440	54440		2.4985	0	1				11012	2426	7783	7849	10754	10754					-0.017231859731282384
EKELELNELLN	11	Unmodified	_EKELELNELLN_					0	0	0			REV__tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1	REV__tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1	MSMS	A375_MHC_IP_R2	2	672.5682373046875	2	672.356282	1342.69801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.399	1	79.144	78.644	79.644	0.74474								0	0	0	0.16203	1	29771	29771		8.1555	1.4324	1		+		11013	28178	7784	7850	10755	10755					0.040369819784018546
EKENDPVTV	9	Unmodified	_EKENDPVTV_					0	0	0			REV__nc|ENSG00000196275|Q86UP8-3|GTF2IRD2	REV__nc|ENSG00000196275|Q86UP8-3|GTF2IRD2	MULTI-SECPEP	A375_MHC_IP_R1	1	515.1669311523438	2	515.756204	1029.49785	-0.48851	-0.00025195	-1.1636	-0.00060014	-1.6521	-0.00085209	515.7554329152813	102.69	0.45612	102.69	102.45	102.91	0					19	8	3	0	0	0	0.58271	1	37721	37721		14.838	0	1	1358200	+		11014	21283	7785	7851	10756	10756					-0.015714478985955793
EKENELLQK	9	Unmodified	_EKENELLQK_					0	0	0		nc|ENSG00000115355|Q3V6T2-5|CCDC88A;nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;ENSG00000115355|ENST00000436346|CCDC88A	nc|ENSG00000115355|Q3V6T2-5|CCDC88A	nc|ENSG00000115355|Q3V6T2-5|CCDC88A	MULTI-SECPEP	A375_MHC_IP_R2	2	378.280517578125	3	377.539911	1129.5979	-0.073767	-2.785E-05	-0.2797	-0.0001056	-0.35347	-0.00013345	377.5389251174516	23.9	0.25647	24.53	24.435	24.691	0.63014					6	4	2	0	0	0	0.59614	1	7720	7720		17.443	0	1	957710			11015	3302	7786	7852	10757	10757					0.038287894352379226
EKEQRRRLEV	10	Unmodified	_EKEQRRRLEV_					0	0	0		ENSG00000214193|ENST00000453908|SH3D21;nc|ENSG00000214193|A4FU49|SH3D21;nc|ENSG00000214193|A4FU49-3|SH3D21	ENSG00000214193|ENST00000453908|SH3D21	ENSG00000214193|ENST00000453908|SH3D21	MSMS	A375_MHC_IP_R1	1	671.7508544921875	2	671.881124	1341.7477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.978	1	85.978	85.478	86.478	0								0	0	0	0.15407	1	31518	31518		7.609	1.8771	1				11016	9608	7787	7853	10758	10758					0.09049154497688505
EKERARQERQR	11	Unmodified	_EKERARQERQR_					0	0	0			REV__nc|ENSG00000131149|Q14687-2|GSE1	REV__nc|ENSG00000131149|Q14687-2|GSE1	MULTI-MSMS	A375_MHC_IP_R2	2	743.8344116210938	2	743.403286	1484.79202	-0.77367	-0.00057515	1.0044	0.0007467	0.23077	0.00017156	743.4039292231965	133.41	0.6076	133.58	133.3	133.91	0.16487					19	11	2	0	0	0	0.73822	1	52544	52544		1.0715	0.10919	1	4182400	+		11017	18592	7788	7854	10759	10759					0.0690155864388089
EKERWIRF	8	Unmodified	_EKERWIRF_					0	0	0		AGAP5|p.S569F|1|0.45|ENSG00000172650|chr10:73674954-73674954|G/A|missense_variant	AGAP5|p.S569F|1|0.45|ENSG00000172650|chr10:73674954-73674954|G/A|missense_variant	AGAP5|p.S569F|1|0.45|ENSG00000172650|chr10:73674954-73674954|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	388.94110107421875	3	388.548852	1162.62473	-0.20807	-8.0846E-05	-0.046536	-1.8081E-05	-0.25461	-9.8927E-05	388.5488675420952	45.359	0.65609	46.124	45.796	46.453	0.76519					23	12	3	0	0	0	0.77603	1	17005	17005		6.7232	1.6756	1	3909900			11018	84	7789	7855	10760	10760					0.04991942837091301
EKESASVAPSW	11	Unmodified	_EKESASVAPSW_					0	0	0			REV__ENSG00000157933|ENST00000378536|SKI	REV__ENSG00000157933|ENST00000378536|SKI	MULTI-SECPEP	A375_MHC_IP_R1	1	396.9717102050781	3	397.527782	1189.56152	-0.34975	-0.00013903	-0.030808	-1.2247E-05	-0.38055	-0.00015128	397.52779997485595	27.95	0.45315	27.95	27.735	28.188	0					11	8	2	0	0	0	0.99227	1	8496	8496		2.6312	0.19645	1	2117100	+		11019	20055	7790	7856	10761	10761					-0.02568087461486357
EKETLRSPK	9	Unmodified	_EKETLRSPK_					0	0	0			REV__nc|ENSG00000134283|Q8NEY8-7|PPHLN1	REV__nc|ENSG00000134283|Q8NEY8-7|PPHLN1	MULTI-SECPEP	A375_MHC_IP_R1	1	363.629150390625	3	363.208384	1086.60332	0.31391	0.00011401	-0.54429	-0.00019769	-0.23038	-8.3678E-05	363.2081320049693	20.534	0.5099	20.534	20.283	20.793	0					24	9	3	0	0	0	0.16676	1	5339	5339		26.021	7.6476	1	1900300	+		11020	18767	7791	7857	10762	10762					0.06348513017701407
EKEYATSGWN	10	Unmodified	_EKEYATSGWN_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D	nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000012817|Q9BY66-2|KDM5D	MULTI-SECPEP	A375_MHC_IP_R1	1	396.2761535644531	3	395.512132	1183.51457	0.077509	3.0656E-05	-0.22631	-8.9507E-05	-0.1488	-5.8851E-05	395.511889204559	20.471	0.35521	20.471	20.283	20.638	0					8	6	2	0	0	0	0.93232	1	5194	5194		10.899	8.4005	1	565340			11021	1013	7792	7858	10763	10763					-0.06984947012597331
EKFHHKMV	8	Unmodified	_EKFHHKMV_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1;ENST00000419794.1_1_9:34318953-34319253:+|nuORF	ENSG00000149257|ENST00000358171|SERPINH1;ENST00000419794.1_1_9:34318953-34319253:+|nuORF	ENSG00000149257|ENST00000358171|SERPINH1	MSMS	A375_MHC_IP_R1	1	528.2109375	2	528.276386	1054.53822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.723	1	24.723	24.223	25.223	0								0	0	0	0.16876	1	7084	7084		14.838	0.93222	1				11022	5792;11719	7793	7859	10764	10764					0.013132400108588627
EKFKWFEEKRL	11	Unmodified	_EKFKWFEEKRL_					0	0	0			REV__ENSG00000185792|ENST00000332836|NLRP9	REV__ENSG00000185792|ENST00000332836|NLRP9	MSMS	A375_MHC_IP_R1	1	770.3305053710938	2	770.419551	1538.82455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.3	1	125.3	124.8	125.8	0								0	0	0	0.16279	1	47600	47600		4.1895	0.90819	1		+		11023	21919	7794	7860	10765	10765					0.07668952994163192
EKFLSIILK	9	Unmodified	_EKFLSIILK_					0	0	0		tr|U7SHE9|U7SHE9_FUSNUAldehydedehydrogenasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02287PE=3SV=1	tr|U7SHE9|U7SHE9_FUSNUAldehydedehydrogenasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02287PE=3SV=1	tr|U7SHE9|U7SHE9_FUSNUAldehydedehydrogenasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02287PE=3SV=1	MSMS	A375_MHC_IP_R2	2	364.2937927246094	3	364.23387	1089.67978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.32	1	65.06	64.56	65.56	0.74022								0	0	0	0.14656	1	24387	24387		27.223	11.485	1				11024	29424	7795	7861	10766	10766					0.13852936584999043
EKFSFRSQEDL	11	Unmodified	_EKFSFRSQEDL_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;ENST00000472776.1_1_2:122122630-122145458:-|nuORF	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-SECPEP	A375_MHC_IP_R1	1	693.0531005859375	2	693.338424	1384.66229	-0.64216	-0.00044523	0.09629	6.6761E-05	-0.54587	-0.00037847	693.840205432174	83.376	0.61099	83.376	83.125	83.736	0					26	11	3	0	0	0	0.92392	1	30601	30601		17.443	17.443	1	3673000			11025	1576	7796	7862	10767	10767					-0.01465055478593058
EKFYLLPLKMI	11	Unmodified	_EKFYLLPLKMI_					0	0	0		TAS2R60|p.F195L|1|0.22|ENSG00000185899|chr7:143444037-143444037|C/G|missense_variant	TAS2R60|p.F195L|1|0.22|ENSG00000185899|chr7:143444037-143444037|C/G|missense_variant	TAS2R60|p.F195L|1|0.22|ENSG00000185899|chr7:143444037-143444037|C/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	465.6697692871094	3	465.60872	1393.80433	-0.62271	-0.00028994	-1.9488	-0.00090739	-2.5715	-0.0011973	465.94251719314497	131.76	0.60684	131.95	131.65	132.25	0.18953					14	11	2	0	0	0	1.0009	1	51772	51772		1.9275	1.473	1	2479700			11026	29300	7797	7863	10768	10768					0.12318066009993345
EKGKQRLLQE	10	Unmodified	_EKGKQRLLQE_					0	0	0			REV__chrX:15507409-15508345|105|27.47|0.32|6.44|+|ENST00000342014|BMX,BMX	REV__chrX:15507409-15508345|105|27.47|0.32|6.44|+|ENST00000342014|BMX,BMX	MULTI-MSMS	A375_MHC_IP_R1	1	410.15289306640625	3	410.238455	1227.69353	-0.024537	-1.0066E-05	0.39871	0.00016357	0.37417	0.0001535	410.2387487125117	34.57	0.50727	34.57	34.353	34.861	0					19	9	3	0	0	0	0.70651	1	11492	11492		5.4027	0	1	2247000	+		11027	15779	7798	7864	10769	10769					0.08879562346146486
EKGSGHSQF	9	Unmodified	_EKGSGHSQF_					0	0	0			REV__ENST00000251496.6_1_4:17812567-17812729:+|nuORF	REV__ENST00000251496.6_1_4:17812567-17812729:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	488.6710510253906	2	488.727781	975.441008	-1.0899	-0.00053265	0.2871	0.00014031	-0.80278	-0.00039234	488.7279411756856	33.672	0.3535	34.425	34.196	34.55	0.75225					10	6	2	0	0	0	0.6898	1	12039	12039		7.9102	7.9102	1	1109500	+		11028	23125	7799	7865	10770	10770					-0.047694506644234025
EKGVELPKYET	11	Unmodified	_EKGVELPKYET_					0	0	0		tr|U7STN7|U7STN7_FUSNUDeoxyuridine5'-triphosphatenucleotidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dutPE=3SV=1	tr|U7STN7|U7STN7_FUSNUDeoxyuridine5'-triphosphatenucleotidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dutPE=3SV=1	tr|U7STN7|U7STN7_FUSNUDeoxyuridine5'-triphosphatenucleotidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dutPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	430.9648132324219	3	431.562604	1291.66598	-0.28783	-0.00012422	3.2171	0.0013884	2.9293	0.0012642	431.89916169890336	41.038	0.15023	41.038	40.913	41.063	0					4	2	2	0	0	0	0.98663	1	14139	14139		12.228	1.1623	1	1017500			11029	29709	7800	7866	10771	10771					0.03181614295203872
EKHILAFDVN	10	Unmodified	_EKHILAFDVN_					0	0	0			REV__ENST00000430496.1_1_9:127913263-127913512:+|nuORF	REV__ENST00000430496.1_1_9:127913263-127913512:+|nuORF	MSMS	A375_MHC_IP_R2	2	395.9366760253906	3	395.880267	1184.61897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.95	1	64.691	64.191	65.191	0.74022								0	0	0	0.15306	1	24250	24250		10.899	0.099449	1		+		11030	19578	7801	7867	10772	10772					0.034047995347464166
EKHTFLVITHG	11	Unmodified	_EKHTFLVITHG_					0	0	0			REV__ENSG00000106560|ENST00000223293|GIMAP2	REV__ENSG00000106560|ENST00000223293|GIMAP2	MSMS	A375_MHC_IP_R2	2	427.9697265625	3	427.903183	1280.68772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.898	1	26.558	26.058	27.058	0.65992								0	0	0	0.14829	1	8700	8700		13.535	6.9115	1		+		11031	17456	7802	7868	10773	10773					0.05860463834460461
EKHTKKKE	8	Unmodified	_EKHTKKKE_					0	0	0		SLC7A14|p.E447K|1|0.49|ENSG00000013293|chr3:170480943-170480943|C/T|missense_variant	SLC7A14|p.E447K|1|0.49|ENSG00000013293|chr3:170480943-170480943|C/T|missense_variant	SLC7A14|p.E447K|1|0.49|ENSG00000013293|chr3:170480943-170480943|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	514.6980590820312	2	514.298373	1026.58219	-0.7515	-0.0003865	0.28729	0.00014775	-0.46422	-0.00023875	514.2983601608928	131.07	1.6259	131.29	130.91	132.53	0.2142					68	31	3	0	0	0	0.77797	1	52000	52000		2.3027	0.4585	1	96833000			11032	29194	7803	7869	10774	10774					0.0699654770885445
EKIGDSYRGY	10	Unmodified	_EKIGDSYRGY_					0	0	0		ENSG00000138380|ENST00000438828|CARF;nc|ENSG00000138380|Q8N187-3|CARF;nc|ENSG00000138380|Q8N187-2|CARF	ENSG00000138380|ENST00000438828|CARF	ENSG00000138380|ENST00000438828|CARF	MULTI-MSMS	A375_MHC_IP_R1	1	396.5934753417969	3	396.527894	1186.56185	-0.22934	-9.0942E-05	0.16595	6.5806E-05	-0.06339	-2.5136E-05	396.5279883652801	23.304	0.50953	23.304	23.024	23.533	0					14	9	2	0	0	0	0.71619	1	6293	6293		5.0475	0	1	8578500			11033	4986	7804	7870	10775	10775					-0.023966677416183302
EKIHRSVEKL	10	Unmodified	_EKIHRSVEKL_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	A375_MHC_IP_R1	1	413.663330078125	3	413.5787	1237.71427	-0.020329	-8.4076E-06	3.1683	0.0013104	3.148	0.0013019	413.5798229268887	29.022	0.3062	29.022	28.895	29.201	0					6	5	2	0	0	0	0.91057	1	9044	9044		18.721	7.8223	1	551500	+		11034	18581	7805	7871	10776	10776					0.10492152725805681
EKIIAYATD	9	Unmodified	_EKIIAYATD_					0	0	0			REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	512.670654296875	2	512.27149	1022.52843	-0.56321	-0.00028851	-0.64972	-0.00033283	-1.2129	-0.00062135	512.2710857839944	138.76	0.60225	138.82	138.65	139.25	0.059906					16	11	2	0	0	0	0.79535	1	54432	54432		6.2058	1.4498	1	784010	+		11035	19998	7806	7872	10777	10777					0.01806330486465413
EKIKEMMQF	9	Unmodified	_EKIKEMMQF_					0	0	0		ENSG00000117643|ENST00000374332|MAN1C1	ENSG00000117643|ENST00000374332|MAN1C1	ENSG00000117643|ENST00000374332|MAN1C1	MULTI-SECPEP	A375_MHC_IP_R2	2	394.94244384765625	3	395.199844	1182.5777	-0.23386	-9.242E-05	2.7813	0.0010992	2.5474	0.0010067	395.2009853489655	33.011	0.30608	33.748	33.518	33.825	0.73692					7	5	2	0	0	0	0.76106	1	11778	11778		9.544	2.0669	1	781330			11036	3504	7807	7873	10778	10778					-0.006284208205897812
EKIMTKLA	8	Unmodified	_EKIMTKLA_					0	0	0			REV__nc|ENSG00000100628|Q96Q27-1|ASB2	REV__nc|ENSG00000100628|Q96Q27-1|ASB2	MSMS	A375_MHC_IP_R2	2	467.3421325683594	2	467.275521	932.536489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.63	1	140.67	140.17	141.17	0.04216								0	0	0	0.16876	1	55041	55041		4.3292	0	1		+		11037	17113	7808	7874	10779	10779					0.06752186202243138
EKIMWSLW	8	Unmodified	_EKIMWSLW_					0	0	0			REV__nc|ENSG00000108506|Q9H0H0|INTS2	REV__nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MSMS	A375_MHC_IP_R1	1	547.6978149414062	2	546.78097	1091.54739	-0.42916	-0.00023466	-2.8387	-0.0015521	-3.2679	-0.0017868	546.7788142026094	62.764	0.4093	62.764	62.557	62.966	0					16	7	3	0	0	0	0.74945	1	22686	22686		20.454	1.0146	1	919070	+		11038	17534	7809	7875	10780	10780					0.005275885765286148
EKINTEGHSSG	11	Unmodified	_EKINTEGHSSG_					0	0	0		nc|ENSG00000134352|P40189-3|IL6ST;ENSG00000134352|ENST00000381298|IL6ST;ENST00000503773.6_1_5:55236912-55256289:-|nuORF	nc|ENSG00000134352|P40189-3|IL6ST	nc|ENSG00000134352|P40189-3|IL6ST	MULTI-SECPEP	A375_MHC_IP_R1	1	580.1737670898438	2	579.772916	1157.53128	-0.30873	-0.00017899	2.2516	0.0013054	1.9429	0.0011264	579.773783881871	83.894	0.55724	83.894	83.634	84.191	0					13	10	2	0	0	0	0.9754	1	30743	30743		12.241	12.241	1	1966400			11039	4569	7810	7876	10781	10781					-0.041184461266539074
EKIQKNKN	8	Unmodified	_EKIQKNKN_					0	0	0		tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	502.03411865234375	2	501.290548	1000.56654	-0.63117	-0.0003164	0.14867	7.4526E-05	-0.4825	-0.00024187	501.29047158481205	133.02	0.61403	133.02	132.79	133.41	0					16	11	2	0	0	0	0.972	1	51357	51357		7.9102	4.3137	1	10008000			11040	29749	7811	7877	10782	10782					0.06628261191792717
EKIQPRQIDFL	11	Unmodified	_EKIQPRQIDFL_					0	0	0		CD226|p.L175F|1|0.21|ENSG00000150637|chr18:69895905-69895905|G/A|missense_variant	CD226|p.L175F|1|0.21|ENSG00000150637|chr18:69895905-69895905|G/A|missense_variant	CD226|p.L175F|1|0.21|ENSG00000150637|chr18:69895905-69895905|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	693.476806640625	2	693.890626	1385.7667	-0.57267	-0.00039737	-0.65196	-0.00045239	-1.2246	-0.00084976	694.3921298183016	134.79	0.20123	134.93	134.8	135	0.13901					10	3	4	0	0	0	0.99738	1	52997	52997		5.2969	0.39987	1	4725200			11041	332	7812	7878	10783	10783					0.08924691068727952
EKIRDYYQK	9	Unmodified	_EKIRDYYQK_					0	0	0		SLIT2|p.R1457K|1|0.18|ENSG00000145147|chr4:20618789-20618789|G/A|missense_variant	SLIT2|p.R1457K|1|0.18|ENSG00000145147|chr4:20618789-20618789|G/A|missense_variant	SLIT2|p.R1457K|1|0.18|ENSG00000145147|chr4:20618789-20618789|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	414.95892333984375	3	414.887422	1241.64044	-0.26813	-0.00011124	0.55439	0.00023001	0.28626	0.00011876	414.88753023079494	18.843	0.16035	19.447	19.423	19.583	0.60308					6	4	2	0	0	0	0.7911	1	5732	5732		1.0715	0	1	20372000			11042	29206	7813	7879	10784	10784					0.029281845634386627
EKIREELGRIK	11	Unmodified	_EKIREELGRIK_					0	0	0		ANKRD30A|p.E1056K|2|0.36|ENSG00000148513|chr10:37217777-37217777|G/A|missense_variant	ANKRD30A|p.E1056K|2|0.36|ENSG00000148513|chr10:37217777-37217777|G/A|missense_variant	ANKRD30A|p.E1056K|2|0.36|ENSG00000148513|chr10:37217777-37217777|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	686.3086547851562	2	685.90935	1369.80415	-0.64753	-0.00044415	-0.744	-0.00051032	-1.3915	-0.00095446	685.9086956358855	131.32	1.1195	131.51	130.88	132	0.18953					100	21	5	0	0	0	0.73807	1	51761	51761		1.1933	0	1	154900000			11043	142	7814	7880	10785	10785					0.1340378233435331
EKIREKVY	8	Unmodified	_EKIREKVY_					0	0	0		tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1	tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1	tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	355.2516784667969	3	355.541475	1063.60259	-0.33284	-0.00011834	0.19558	6.9537E-05	-0.13726	-4.8801E-05	355.54146574806816	36.104	0.30714	36.875	36.748	37.056	0.77085					10	5	2	0	0	0	0.972	1	13131	13131		5.2969	0	1	1002500			11044	30054	7815	7881	10786	10786					0.07333718368658992
EKIRLLLRKHR	11	Unmodified	_EKIRLLLRKHR_					0	0	0		ENSG00000165066|ENST00000518699|NKX6-3;nc|ENSG00000165066|A6NJ46-2|NKX6-3	ENSG00000165066|ENST00000518699|NKX6-3	ENSG00000165066|ENST00000518699|NKX6-3	MSMS	A375_MHC_IP_R2	2	731.5010375976562	2	731.478069	1460.94158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.581	1	81.326	80.826	81.826	0.74474								0	0	0	0.16353	1	30593	30593		0.35063	0	1				11045	6907	7816	7882	10787	10787					0.2295515572441218
EKIRQLKKKET	11	Unmodified	_EKIRQLKKKET_					0	0	0		nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	MULTI-MSMS	A375_MHC_IP_R1	1	701.3311767578125	2	700.932825	1399.8511	-0.92335	-0.0006472	-0.64627	-0.00045299	-1.5696	-0.0011002	700.9324320150118	137.57	0.51025	137.57	137.44	137.95	0					22	9	4	0	0	0	0.73891	1	52963	52963		1.1933	0.84271	1	3514400			11046	2013	7817	7883	10788	10788					0.16716641885500394
EKISFNKPLC	10	Unmodified	_EKISFNKPLC_					0	0	0			REV__EPHX2|p.N359Ifs*43|1|0.12|ENSG00000120915|chr8:27525378-27525378|A/-|frameshift_variant	REV__EPHX2|p.N359Ifs*43|1|0.12|ENSG00000120915|chr8:27525378-27525378|A/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	589.71435546875	2	589.815541	1177.61653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.085	1	51.085	50.585	51.585	0								0	0	0	0.14483	1	18121	18121		27.629	4.8925	1		+		11047	18143	7818	7884	10789	10789					0.03482627805442462
EKKESLINIK	10	Unmodified	_EKKESLINIK_					0	0	0		tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	601.7588500976562	2	601.36117	1200.70779	-0.30334	-0.00018242	-0.66825	-0.00040186	-0.97159	-0.00058428	601.3605975825454	145.15	0.57755	145.17	144.89	145.47	0.021408					53	31	2	0	0	0	0.72416	1	56636	56636		1.4819	0	1	443620			11048	29815	7819	7885	10790	10790					0.11546214774398322
EKKESLINIK	10	Unmodified	_EKKESLINIK_					0	0	0		tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	601.36117	1200.70779	-0.72705	-0.00043722	-0.15123	-9.0942E-05	-0.87827	-0.00052816	601.360893500232	145.14	0.67528	145.14	144.77	145.45	0	-0.017488	0.00030338	NaN	1.4819	46	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	528040			11049	29815	7819	7885							0.11546214774398322
EKKESLINIK	10	Unmodified	_EKKESLINIK_					0	0	0		tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	601.36117	1200.70779	-0.30334	-0.00018242	-0.66825	-0.00040186	-0.97159	-0.00058428	601.3605975825454	145.15	0.57755	145.17	144.89	145.47	0.021408	0.017488	-0.00031846	NaN	1.4819	53	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	443620			11050	29815	7819	7885							0.11546214774398322
EKKETVTQLQN	11	Unmodified	_EKKETVTQLQN_					0	0	0		GCC2|p.N877Sfs*6|1|0.13|ENSG00000135968|chr2:108471956-108471957|AG/-|frameshift_variant;ENSG00000135968|ENST00000309863|GCC2	GCC2|p.N877Sfs*6|1|0.13|ENSG00000135968|chr2:108471956-108471957|AG/-|frameshift_variant	GCC2|p.N877Sfs*6|1|0.13|ENSG00000135968|chr2:108471956-108471957|AG/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	439.9378662109375	3	439.905141	1316.69359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.324	1	19.324	18.824	19.824	0								0	0	0	0.16265	1	4700	4700		2.2527	0.51045	1				11051	4735	7820	7886	10791	10791					0.04791517555509017
EKKIATFSL	9	Unmodified	_EKKIATFSL_					0	0	0		BTNL2|p.E445K|1|0.08|ENSG00000204290|chr6:32394771-32394771|C/T|missense_variant	BTNL2|p.E445K|1|0.08|ENSG00000204290|chr6:32394771-32394771|C/T|missense_variant	BTNL2|p.E445K|1|0.08|ENSG00000204290|chr6:32394771-32394771|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	518.7131958007812	2	518.8055	1035.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.09	1	112.09	111.59	112.59	0								0	0	0	0.15486	1	41085	41085		12.532	0.89125	1				11052	260	7821	7887	10792	10792					0.08007200137149084
EKKIHYVW	8	Unmodified	_EKKIHYVW_					0	0	0		tr|U7SRF4|U7SRF4_FUSNUGlycosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01644PE=4SV=1	tr|U7SRF4|U7SRF4_FUSNUGlycosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01644PE=4SV=1	tr|U7SRF4|U7SRF4_FUSNUGlycosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01644PE=4SV=1	MSMS	A375_MHC_IP_R1	1	551.7061767578125	2	551.805834	1101.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.22	1	38.22	37.72	38.72	0								0	0	0	0.16876	1	12944	12944		14.582	0.67564	1				11053	29608	7822	7888	10793	10793					0.05038039576857045
EKKISLNW	8	Unmodified	_EKKISLNW_					0	0	0			REV__ENSG00000111348|ENST00000228945|ARHGDIB	REV__ENSG00000111348|ENST00000228945|ARHGDIB	MULTI-SECPEP	A375_MHC_IP_R1	1	509.0613098144531	2	509.290017	1016.56548	-0.25469	-0.00012971	-0.13008	-6.6249E-05	-0.38477	-0.00019596	509.2900228884026	82.475	0.66048	82.475	82.062	82.722	0					23	12	3	0	0	0	0.84294	1	30161	30161		30.637	0	1	1306700	+		11054	17667	7823	7889	10794	10794					0.057860468229023354
EKKISLNW	8	Unmodified	_EKKISLNW_					0	0	0			REV__ENSG00000111348|ENST00000228945|ARHGDIB	REV__ENSG00000111348|ENST00000228945|ARHGDIB	MULTI-SECPEP	A375_MHC_IP_R2	2	509.1661682128906	2	509.290017	1016.56548	-0.82787	-0.00042163	-0.59929	-0.00030521	-1.4272	-0.00072684	509.2894169308705	81.558	0.40232	82.301	81.979	82.381	0.74293					12	7	2	0	0	0	0.77651	1	30980	30980		26.884	0	1	1889300	+		11055	17667	7823	7889	10795	10795					0.057860468229023354
EKKKKKKKKVI	11	Unmodified	_EKKKKKKKKVI_					0	0	0			REV__ENST00000393214.2_1_X:73596212-73596416:-|nuORF	REV__ENST00000393214.2_1_X:73596212-73596416:-|nuORF	MSMS	A375_MHC_IP_R1	1	692.806640625	2	692.989946	1383.96534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.07	1	106.07	105.57	106.57	0								0	0	0	0.1636	1	38937	38937		0	0	1		+		11056	24290	7824	7890	10796	10796					0.2887157643824594
EKKKKLSTPAG	11	Unmodified	_EKKKKLSTPAG_					0	0	0		TET3|p.P583S|1|0.54|ENSG00000187605|chr2:74047664-74047664|C/T|missense_variant	TET3|p.P583S|1|0.54|ENSG00000187605|chr2:74047664-74047664|C/T|missense_variant	TET3|p.P583S|1|0.54|ENSG00000187605|chr2:74047664-74047664|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	396.26531982421875	3	396.243317	1185.70812	-0.37946	-0.00015036	1.368	0.00054205	0.98851	0.00039169	396.2437908702144	23.811	0.25538	24.441	24.333	24.588	0.63014					7	4	3	0	0	0	0.73239	1	7780	7780		6.6235	0.84002	1	752230			11057	29329	7825	7891	10797	10797					0.122696344942824
EKKQGLINFLN	11	Unmodified	_EKKQGLINFLN_					0	0	0		CCDC40|p.R725K|1|0.33|ENSG00000141519|chr17:80084927-80084927|G/A|missense_variant	CCDC40|p.R725K|1|0.33|ENSG00000141519|chr17:80084927-80084927|G/A|missense_variant	CCDC40|p.R725K|1|0.33|ENSG00000141519|chr17:80084927-80084927|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	435.1661376953125	3	435.250472	1302.72959	-0.042575	-1.8531E-05	0.84717	0.00036873	0.80459	0.0003502	435.58591286994505	62.583	0.25649	62.583	62.403	62.66	0					7	4	2	0	0	0	0.72829	1	22609	22609		10.527	0.76322	1	932270			11058	314	7826	7892	10798	10798					0.09033019523008079
EKKVLLERY	9	Unmodified	_EKKVLLERY_					0	0	0			REV__CAST|p.A293V|1|0.21|ENSG00000153113|chr5:96742683-96742683|C/T|missense_variant	REV__CAST|p.A293V|1|0.21|ENSG00000153113|chr5:96742683-96742683|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	393.2681884765625	3	393.236163	1176.68666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.634	1	24.634	24.134	25.134	0								0	0	0	0.15306	1	7039	7039		16.566	2.3477	1		+		11059	15584	7827	7893	10799	10799					0.10538249465571425
EKLDTIAKV	9	Unmodified	_EKLDTIAKV_					0	0	0		ENSG00000122707|ENST00000377966|RECK	ENSG00000122707|ENST00000377966|RECK	ENSG00000122707|ENST00000377966|RECK	MULTI-SECPEP	A375_MHC_IP_R1	1	509.20281982421875	2	508.802957	1015.59136	0.1032	5.251E-05	-0.50559	-0.00025725	-0.40239	-0.00020474	508.80265971807864	44.749	0.7626	44.749	44.318	45.081	0					24	14	3	0	0	0	0.4465	1	15605	15605		24.991	1.2012	1	3545500			11060	3803	7828	7894	10800	10800					0.08418896274531562
EKLDYKTCEA	10	Unmodified	_EKLDYKTCEA_					0	0	0		ENSG00000104866|ENST00000221462|PPP1R37;ENST00000545910.1_1_19:45641863-45643897:+|nuORF	ENSG00000104866|ENST00000221462|PPP1R37	ENSG00000104866|ENST00000221462|PPP1R37	MULTI-MSMS	A375_MHC_IP_R1	1	401.2535095214844	3	400.525273	1198.55399	-0.28169	-0.00011282	0.036835	1.4753E-05	-0.24485	-9.8069E-05	400.52530234994856	25.332	0.35627	25.332	25.154	25.511	0					13	6	3	0	0	0	0.70012	1	7349	7349		7.4771	4.1213	1	10519000			11061	2545	7829	7895	10801	10801					-0.037345630533991425
EKLEGPGAF	9	Unmodified	_EKLEGPGAF_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MSMS	A375_MHC_IP_R2	2	474.6448669433594	2	474.245275	946.475997	-0.67226	-0.00031882	0.13357	6.3346E-05	-0.53869	-0.00025547	474.245320557523	70.981	0.50744	71.715	71.503	72.01	0.73421					14	9	2	0	0	0	0.27715	1	26919	26919		32.305	5.4218	1	3329700			11062	8698	7830	7896	10802	10802					0.0006179214353778661
EKLELSLPYSV	11	Unmodified	_EKLELSLPYSV_					0	0	0			REV__nc|ENSG00000143420|O43768-8|ENSA	REV__nc|ENSG00000143420|O43768-8|ENSA	MSMS	A375_MHC_IP_R1	1	639.0693359375	2	639.353011	1276.69147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.33	1	120.33	119.83	120.83	0								0	0	0	0.15971	1	44568	44568		14.405	0	1		+		11063	27268	7831	7897	10803	10803					0.06419088817688134
EKLEREWD	8	Unmodified	_EKLEREWD_					0	0	0		ENSG00000001626|ENST00000003084|CFTR;nc|ENSG00000001626|P13569-2|CFTR;nc|ENSG00000001626|P13569-3|CFTR	ENSG00000001626|ENST00000003084|CFTR	ENSG00000001626|ENST00000003084|CFTR	MULTI-MSMS	A375_MHC_IP_R1	1	554.2139282226562	2	552.769645	1103.52474	-0.32009	-0.00017693	0.54381	0.0003006	0.22372	0.00012367	552.769783495553	39.184	0.86228	39.184	38.679	39.541	0					52	16	4	0	0	0	0.76654	1	13315	13315		15.847	15.847	1	9487500			11064	848	7832	7898	10804	10804					-0.022883392873836783
EKLHKDFYNWE	11	Unmodified	_EKLHKDFYNWE_					0	0	0			REV__ENST00000540952.5_1_22:38982050-39003412:-|nuORF	REV__ENST00000540952.5_1_22:38982050-39003412:-|nuORF	MSMS	A375_MHC_IP_R2	2	503.6466979980469	3	503.577136	1507.70958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.894	1	72.628	72.128	73.128	0.73421								0	0	0	0.16316	1	27281	27281		2.2527	0	1		+		11065	21849	7833	7899	10805	10805					-0.02396776207615403
EKLIEYKTY	9	Unmodified	_EKLIEYKTY_					0	0	0		ENST00000478866.5_1_1:161172175-161179984:+|nuORF;nc|ENSG00000158864|O75306-2|NDUFS2;ENSG00000158864|ENST00000676972|NDUFS2	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	396.9559631347656	3	396.216657	1185.62814	-0.42013	-0.00016646	-2.292	-0.00090814	-2.7122	-0.0010746	396.21575849375347	24.301	0.15256	24.945	24.857	25.009	0.64368					4	2	2	0	0	0	0.73926	1	7972	7972		8.9762	0	1	1563100			11066	6337	7834	7900	10806	10806					0.04275148100441584
EKLKQARE	8	Unmodified	_EKLKQARE_					0	0	0			REV__ENSG00000187741|ENST00000389301|FANCA	REV__ENSG00000187741|ENST00000389301|FANCA	MULTI-MSMS	A375_MHC_IP_R1	1	501.6905822753906	2	501.290548	1000.56654	-0.7313	-0.00036659	0.13993	7.0148E-05	-0.59137	-0.00029645	501.29051103950144	121.05	1.9774	121.05	120.55	122.53	0					89	38	3	0	0	0	0.77602	1	44938	44938		9.3831	2.66	1	74159000	+		11067	22042	7835	7901	10807	10807					0.06628261191792717
EKLKQARE	8	Unmodified	_EKLKQARE_					0	0	0			REV__ENSG00000187741|ENST00000389301|FANCA	REV__ENSG00000187741|ENST00000389301|FANCA	MULTI-SECPEP	A375_MHC_IP_R1	1	501.6905822753906	2	501.290548	1000.56654	-0.7313	-0.00036659	0.13993	7.0148E-05	-0.59137	-0.00029645	501.29051103950144	121.05	1.9774	121.05	120.55	122.53	0					89	38	3	0	0	0	0.972	1	44938	44938		9.3831	2.66	1	74159000	+		11068	22042	7835	7901	10808	10808					0.06628261191792717
EKLKQARE	8	Unmodified	_EKLKQARE_					0	0	0			REV__ENSG00000187741|ENST00000389301|FANCA	REV__ENSG00000187741|ENST00000389301|FANCA	MULTI-MSMS	A375_MHC_IP_R2	2	501.6897888183594	2	501.290548	1000.56654	-0.57483	-0.00028816	-0.16118	-8.0799E-05	-0.73601	-0.00036896	501.2903817384042	120.3	2.329	120.83	119.84	122.17	0.5321					88	45	3	0	0	0	0.77374	1	46107	46107		13.906	0	1	77391000	+		11069	22042	7835	7901	10809	10809					0.06628261191792717
EKLKQKKRLLI	11	Unmodified	_EKLKQKKRLLI_					0	0	0			REV__ENST00000489408.1_1_3:32023272-32027845:+|nuORF	REV__ENST00000489408.1_1_3:32023272-32027845:+|nuORF	MSMS	A375_MHC_IP_R1	1	466.33599853515625	3	466.316928	1395.92895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.5	1	133.5	133	134	0								0	0	0	0.16337	1	51480	51480		0.40827	0.40827	1		+		11070	25370	7836	7902	10810	10810					0.24682699541563125
EKLKQKKRLLI	11	Unmodified	_EKLKQKKRLLI_					0	0	0			REV__ENST00000489408.1_1_3:32023272-32027845:+|nuORF	REV__ENST00000489408.1_1_3:32023272-32027845:+|nuORF	MSMS	A375_MHC_IP_R2	2	466.3359680175781	3	466.316928	1395.92895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.44	1	133.6	133.1	134.1	0.16487								0	0	0	0.16337	1	52494	52494		0.40827	0.335	1		+		11071	25370	7836	7902	10811	10811					0.24682699541563125
EKLLKKMQF	9	Unmodified	_EKLLKKMQF_					0	0	0		TRIM48|p.S162F|1|0.13|ENSG00000150244|chr11:55265625-55265625|C/T|missense_variant	TRIM48|p.S162F|1|0.13|ENSG00000150244|chr11:55265625-55265625|C/T|missense_variant	TRIM48|p.S162F|1|0.13|ENSG00000150244|chr11:55265625-55265625|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	388.8990173339844	3	388.898493	1163.67365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.983	1	29.682	29.182	30.182	0.69872								0	0	0	0.15486	1	10079	10079		7.1017	0.47135	1				11072	30074	7837	7903	10812	10812					0.0983609508182326
EKLNEIEQK	9	Unmodified	_EKLNEIEQK_					0	0	0			REV__ENSG00000165813|ENST00000369287|CCDC186	REV__ENSG00000165813|ENST00000369287|CCDC186	MULTI-SECPEP	A375_MHC_IP_R1	1	377.59649658203125	3	377.539911	1129.5979	0.2763	0.00010432	-0.7277	-0.00027474	-0.4514	-0.00017042	377.5394068984426	19.773	0.459	19.773	19.521	19.98	0					12	8	2	0	0	0	0.50484	1	4958	4958		22.658	0	1	1331500	+		11073	20626	7838	7904	10813	10813					0.038287894352379226
EKLNLNTKL	9	Unmodified	_EKLNLNTKL_					0	0	0			REV__ENST00000354485.5_1_9:676972-730286:+|nuORF	REV__ENST00000354485.5_1_9:676972-730286:+|nuORF	MSMS	A375_MHC_IP_R2	2	358.2610778808594	3	358.21688	1071.62881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.561	1	35.319	34.819	35.819	0.7579								0	0	0	0.15196	1	12479	12479		18.373	0.50992	1		+		11074	17473	7839	7905	10814	10814					0.09585987540117458
EKLQEKREKRR	11	Unmodified	_EKLQEKREKRR_					0	0	0		nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A;ENSG00000068796|ENST00000407818|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	MULTI-SECPEP	A375_MHC_IP_R2	2	501.2046813964844	3	500.630346	1498.86921	-0.38838	-0.00019443	0.74497	0.00037295	0.35659	0.00017852	500.6305347492035	141.8	0.30463	141.83	141.62	141.92	0.030731					6	5	2	0	0	0	1.0012	1	55457	55457		1.2148	1.12	1	1035600			11075	1467	7840	7906	10815	10815					0.13972776860191516
EKLRAEVTLT	10	Unmodified	_EKLRAEVTLT_					0	0	0			REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	MULTI-MSMS	A375_MHC_IP_R2	2	580.7374267578125	2	580.337695	1158.66084	-0.21156	-0.00012278	-0.16894	-9.8042E-05	-0.3805	-0.00022082	580.3373710221125	133.66	1.1715	133.83	133.3	134.47	0.16487					45	22	3	0	0	0	0.72014	1	52591	52591		3.2813	0.28607	1	12334000	+		11076	22215	7841	7907	10816	10816					0.08785355223267288
EKLREEKDRLL	11	Unmodified	_EKLREEKDRLL_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP;nc|ENSG00000133030|Q6WCQ1-3|MPRIP;nc|ENSG00000133030|Q6WCQ1|MPRIP;nc|ENSG00000133030|Q6WCQ1-2|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	A375_MHC_IP_R2	2	477.3428649902344	3	476.943819	1427.80963	-0.44913	-0.00021421	-0.2102	-0.00010025	-0.65934	-0.00031447	476.943727677567	133.77	1.3243	133.93	133.25	134.57	0.16487					30	25	2	0	0	0	0.73807	1	52654	52654		1.2148	1.2148	1	3437200			11077	4476	7842	7908	10817	10817					0.11283461126163274
EKLREEKDRLL	11	Unmodified	_EKLREEKDRLL_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP;nc|ENSG00000133030|Q6WCQ1-3|MPRIP;nc|ENSG00000133030|Q6WCQ1|MPRIP;nc|ENSG00000133030|Q6WCQ1-2|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	476.943819	1427.80963	-0.77424	-0.00036927	-0.075789	-3.6147E-05	-0.85002	-0.00040541	476.9435765922585	133.89	1.1159	133.89	133.41	134.52	0	-0.021637	5.6948E-05	NaN	1.2148	31	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3047600			11078	4476	7842	7908							0.11283461126163274
EKLREKERKK	10	Unmodified	_EKLREKERKK_					0	0	0		ENST00000478509.1_1_X:153674748-153677371:+|nuORF;ENST00000481619.5_1_X:153672624-153677371:+|nuORF;ENSG00000071859|ENST00000393600|FAM50A	ENST00000478509.1_1_X:153674748-153677371:+|nuORF	ENST00000478509.1_1_X:153674748-153677371:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	672.8081665039062	2	672.409518	1342.80448	-0.70797	-0.00047605	-0.5725	-0.00038495	-1.2805	-0.000861	672.408957048124	131.58	2.3897	131.77	131.19	133.58	0.18954					135	46	5	0	0	0	0.72078	1	51822	51822		2.9952	0	1	109320000			11079	1520	7843	7909	10818	10818					0.14679202054185225
EKLRRELRRAG	11	Unmodified	_EKLRRELRRAG_					0	0	0			REV__ENSG00000188070|ENST00000433688|ZFTA	REV__ENSG00000188070|ENST00000433688|ZFTA	MULTI-MSMS	A375_MHC_IP_R2	2	691.816162109375	2	692.418208	1382.82186	-0.49085	-0.00033987	2.593	0.0017955	2.1022	0.0014556	692.4202063121911	142.48	1.1166	142.51	141.62	142.74	0.030731					31	21	2	0	0	0	0.73698	1	55630	55630		4.897	3.4151	1	4108400	+		11080	22071	7844	7910	10819	10819					0.14576542379859347
EKLRRELRRAG	11	Unmodified	_EKLRRELRRAG_					0	0	0			REV__ENSG00000188070|ENST00000433688|ZFTA	REV__ENSG00000188070|ENST00000433688|ZFTA	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	692.418208	1382.82186	-0.49085	-0.00033987	2.593	0.0017955	2.1022	0.0014556	692.4202063121911	142.48	1.1166	142.51	141.62	142.74	0.030731	0.017423	0.00021773	NaN	4.897	31	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4108400	+		11081	22071	7844	7910							0.14576542379859347
EKLRSSRRRR	10	Unmodified	_EKLRSSRRRR_					0	0	0		SRRM2|p.S1739L|1|0.1|ENSG00000167978|chr16:2765744-2765744|C/T|missense_variant	SRRM2|p.S1739L|1|0.1|ENSG00000167978|chr16:2765744-2765744|C/T|missense_variant	SRRM2|p.S1739L|1|0.1|ENSG00000167978|chr16:2765744-2765744|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	672.8084106445312	2	672.408175	1342.8018	-0.74259	-0.00049932	0.86325	0.00058046	0.12067	8.1139E-05	672.408551882627	130.62	1.2175	130.83	130.1	131.31	0.2142					64	23	3	0	0	0	0.72078	1	51364	51364		2.9952	1.5133	1	48598000			11082	29248	7845	7911	10820	10820					0.14410791439900095
EKLSDSLDMH	10	Unmodified	_EKLSDSLDMH_					0	0	0		ENST00000559327.1_1_15:65676349-65688574:-|nuORF;nc|ENSG00000103742|Q8TDY8-2|IGDCC4;ENSG00000103742|ENST00000352385|IGDCC4	ENST00000559327.1_1_15:65676349-65688574:-|nuORF	ENST00000559327.1_1_15:65676349-65688574:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	588.2142333984375	2	587.774071	1173.53359	-0.62207	-0.00036564	-1.2714	-0.00074732	-1.8935	-0.001113	587.7725257755459	40.261	0.50692	41.036	40.676	41.183	0.77451					14	9	2	0	0	0	0.67512	1	14769	14769		15.248	0.41021	1	1914600			11083	2468	7846	7912	10821	10821					-0.046237337132197354
EKLSIERSKK	10	Unmodified	_EKLSIERSKK_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	A375_MHC_IP_R2	2	406.9432678222656	3	406.578588	1216.71394	-0.2475	-0.00010063	0.83833	0.00034085	0.59083	0.00024022	406.91327801112215	24.137	0.35656	24.781	24.55	24.907	0.64368					12	6	3	0	0	0	0.93711	1	7787	7787		3.8459	0	1	7062800	+		11084	18428	7847	7913	10822	10822					0.11424733005924281
EKLTNRYLRLR	11	Unmodified	_EKLTNRYLRLR_					0	0	0			REV__nc|ENSG00000174963|Q8N9L1-2|ZIC4	REV__nc|ENSG00000174963|Q8N9L1-2|ZIC4	MULTI-SECPEP	A375_MHC_IP_R2	2	731.8770751953125	2	731.436067	1460.85758	-0.59449	-0.00043483	2.4033	0.0017579	1.8088	0.001323	731.4383633216187	100.27	0.30505	101.03	100.78	101.08	0.76278					7	5	2	0	0	0	0.9988	1	38026	38026		4.1895	2.7076	1	1395100	+		11085	27371	7848	7914	10823	10823					0.1455857983687565
EKLVCKLIRL	10	Unmodified	_EKLVCKLIRL_					0	0	0		VPS13A|p.R204C|1|0.28|ENSG00000197969|chr9:77213023-77213023|C/T|missense_variant	VPS13A|p.R204C|1|0.28|ENSG00000197969|chr9:77213023-77213023|C/T|missense_variant	VPS13A|p.R204C|1|0.28|ENSG00000197969|chr9:77213023-77213023|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	405.6120300292969	3	405.593293	1213.75805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.593	1	45.593	45.093	46.093	0								0	0	0	0.15411	1	15962	15962		7.4771	1.2852	1				11086	30146	7849	7915	10824	10824					0.15972045898570286
EKLVKLLNR	9	Unmodified	_EKLVKLLNR_					0	0	0			REV__nc|ENSG00000122484|Q8IXW5-2|RPAP2	REV__nc|ENSG00000122484|Q8IXW5-2|RPAP2	MULTI-MSMS	A375_MHC_IP_R1	1	371.5809020996094	3	371.576519	1111.70773	-0.041259	-1.5331E-05	-0.019154	-7.1171E-06	-0.060413	-2.2448E-05	371.5764144172434	29.655	2.5184	29.655	29.098	31.616	0					123	49	4	0	0	0	0.75032	1	9187	9187		2.4985	0.21571	1	98515000	+		11087	18210	7850	7916	10825	10825					0.15634259565081265
EKLWFVPA	8	Unmodified	_EKLWFVPA_					0	0	0		ENSG00000115594|ENST00000410023|IL1R1	ENSG00000115594|ENST00000410023|IL1R1	ENSG00000115594|ENST00000410023|IL1R1	MULTI-SECPEP	A375_MHC_IP_R1	1	495.6755676269531	2	495.276378	988.538203	-0.57935	-0.00028694	-0.74087	-0.00036694	-1.3202	-0.00065387	495.27597069138307	25.851	0.5569	25.851	25.511	26.068	0					17	10	2	0	0	0	0.8957	1	7628	7628		15.847	5.7733	1	2137800			11088	3323	7851	7917	10826	10826					0.043475632825106914
EKLWTLRSY	9	Unmodified	_EKLWTLRSY_					0	0	0		ENSG00000156928|ENST00000466681|MALSU1;ENST00000476623.1_1_7:23347480-23349159:+|nuORF	ENSG00000156928|ENST00000466681|MALSU1	ENSG00000156928|ENST00000466681|MALSU1	MULTI-MSMS	A375_MHC_IP_R1	1	399.53424072265625	3	399.220513	1194.63971	-0.10305	-4.114E-05	0.20562	8.209E-05	0.10257	4.0949E-05	399.2206053200312	62.433	0.30856	62.433	62.3	62.609	0					9	5	2	0	0	0	0.62591	1	22500	22500		13.615	0	1	1029400			11089	6217	7852	7918	10827	10827					0.05017389914405612
EKMQIIFQDP	10	Unmodified	_EKMQIIFQDP_					0	0	0		tr|U7SNG5|U7SNG5_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01747PE=3SV=1	tr|U7SNG5|U7SNG5_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01747PE=3SV=1	tr|U7SNG5|U7SNG5_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01747PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	417.28106689453125	3	416.88128	1247.62201	0.082212	3.4273E-05	-2.1047	-0.00087739	-2.0224	-0.00084312	416.8802290918092	19.382	0.48709	19.382	19.238	19.725	0					19	9	3	0	0	0	0.77204	1	4845	4845		10.315	0.55098	1	3910300			11090	29550	7853	7919	10828	10828					0.00810306597259114
EKMWRQEMMRE	11	Unmodified	_EKMWRQEMMRE_					0	0	0		nc|ENSG00000174450|Q8N9W4-2|GOLGA6L2	nc|ENSG00000174450|Q8N9W4-2|GOLGA6L2	nc|ENSG00000174450|Q8N9W4-2|GOLGA6L2	MSMS	A375_MHC_IP_R1	1	518.65087890625	3	518.572234	1552.69487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.529	1	40.529	40.029	41.029	0								0	0	0	0.16316	1	13932	13932		2.2527	0.92309	1				11091	14774	7854	7920	10829	10829					-0.059366309433016795
EKMWRQEMMRE	11	Unmodified	_EKMWRQEMMRE_					0	0	0		nc|ENSG00000174450|Q8N9W4-2|GOLGA6L2	nc|ENSG00000174450|Q8N9W4-2|GOLGA6L2	nc|ENSG00000174450|Q8N9W4-2|GOLGA6L2	MSMS	A375_MHC_IP_R2	2	518.6508178710938	3	518.572234	1552.69487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.78	1	40.555	40.055	41.055	0.77451								0	0	0	0.1628	1	14705	14705		4.1166	2.6615	1				11092	14774	7854	7920	10830	10830					-0.059366309433016795
EKNFSLTEAP	10	Unmodified	_EKNFSLTEAP_					0	0	0		ENST00000446672.2_1_13:19931694-19949148:+|nuORF	ENST00000446672.2_1_13:19931694-19949148:+|nuORF	ENST00000446672.2_1_13:19931694-19949148:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	568.684814453125	2	568.285128	1134.5557	-0.30436	-0.00017297	0.16611	9.4395E-05	-0.13826	-7.857E-05	568.2852587983352	52.143	0.81451	52.143	51.879	52.694	0					21	15	2	0	0	0	0.25355	1	18587	18587		43.772	7.6454	1	4035600			11093	12039	7855	7921	10831	10831					-0.00619185973164349
EKNHTCVT	8	Unmodified	_EKNHTCVT_					0	0	0		ENST00000337872.8_1_4:4304620-4317556:+|nuORF	ENST00000337872.8_1_4:4304620-4317556:+|nuORF	ENST00000337872.8_1_4:4304620-4317556:+|nuORF	MSMS	A375_MHC_IP_R1	1	466.1779479980469	2	466.218734	930.422915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.04	1	105.04	104.54	105.54	0								0	0	0	0.16876	1	38565	38565		9.3474	0.75416	1				11094	10834	7856	7922	10832	10832					-0.04507908910807146
EKNIIKTF	8	Unmodified	_EKNIIKTF_					0	0	0			REV__tr|U7SNB3|U7SNB3_FUSNUBis(5'-nucleosidyl)-tetraphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01881PE=4SV=1	REV__tr|U7SNB3|U7SNB3_FUSNUBis(5'-nucleosidyl)-tetraphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01881PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	497.1921081542969	2	496.792392	991.570232	-0.21159	-0.00010511	-0.10559	-5.2454E-05	-0.31717	-0.00015757	496.79227737945416	51.689	0.45497	51.689	51.424	51.879	0					13	8	2	0	0	0	0.4193	1	18383	18383		58.679	3.9053	1	2160800	+		11095	28320	7857	7923	10833	10833					0.0741093096565919
EKNIIKTF	8	Unmodified	_EKNIIKTF_					0	0	0			REV__tr|U7SNB3|U7SNB3_FUSNUBis(5'-nucleosidyl)-tetraphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01881PE=4SV=1	REV__tr|U7SNB3|U7SNB3_FUSNUBis(5'-nucleosidyl)-tetraphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01881PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	496.792392	991.570232	-0.58668	-0.00029146	0.17457	8.6726E-05	-0.41211	-0.00020473	496.7923977600201	50.771	0.55529	51.525	51.209	51.765	0.75406	-0.082244	0.00013997	NaN	58.679	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2155700	+		11096	28320	7857	7923							0.0741093096565919
EKNIPMSEYK	10	Unmodified	_EKNIPMSEYK_					0	0	0		ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	MULTI-SECPEP	A375_MHC_IP_R1	1	413.3081970214844	3	413.541034	1237.60127	0.23947	9.9029E-05	0.29705	0.00012284	0.53651	0.00022187	413.54123538405173	37.736	0.40884	37.736	37.607	38.016	0					14	7	3	0	0	0	0.83355	1	12809	12809		10.899	7.5793	1	1333500			11097	5423	7858	7924	10834	10834					-0.008022837824000817
EKNKDFMTPL	10	Unmodified	_EKNKDFMTPL_					0	0	0		ENSG00000173273|ENST00000310430|TNKS;nc|ENSG00000173273|O95271-2|TNKS	ENSG00000173273|ENST00000310430|TNKS	ENSG00000173273|ENST00000310430|TNKS	MULTI-SECPEP	A375_MHC_IP_R1	1	408.4333801269531	3	408.209396	1221.60636	-0.41993	-0.00017142	2.464	0.0010058	2.0441	0.00083442	408.21066455939945	26.043	0.45583	26.043	25.714	26.17	0					11	8	2	0	0	0	0.81532	1	7621	7621		12.856	0	1	1567100			11098	7783	7859	7925	10835	10835					0.004420200802087493
EKNNDEYIY	9	Unmodified	_EKNNDEYIY_					0	0	0		tr|U7SH77|U7SH77_FUSNUDNApolymeraseIII,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02212PE=3SV=1	tr|U7SH77|U7SH77_FUSNUDNApolymeraseIII,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02212PE=3SV=1	tr|U7SH77|U7SH77_FUSNUDNApolymeraseIII,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02212PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	594.6643676757812	2	594.264393	1186.51423	-0.33171	-0.00019712	0.35259	0.00020953	0.020877	1.2407E-05	594.2645209286903	63.409	0.61388	63.409	63.121	63.735	0					25	11	3	0	0	0	0.70307	1	23001	23001		6.7232	0.51738	1	3395600			11099	29416	7860	7926	10836	10836					-0.07156366732488095
EKNSIGYHYI	10	Unmodified	_EKNSIGYHYI_					0	0	0		GRIA1|p.G223S|1|0.33|ENSG00000155511|chr5:153655840-153655840|G/A|missense_variant	GRIA1|p.G223S|1|0.33|ENSG00000155511|chr5:153655840-153655840|G/A|missense_variant	GRIA1|p.G223S|1|0.33|ENSG00000155511|chr5:153655840-153655840|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	408.59979248046875	3	408.540022	1222.59824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.146	1	46.911	46.411	47.411	0.76519								0	0	0	0.15038	1	17275	17275		10.899	0.099449	1				11100	14079	7861	7927	10837	10837					-0.004157908448860326
EKNVLLLRYPL	11	Unmodified	_EKNVLLLRYPL_					0	0	0		ENST00000318522.9_1_2:42557683-42557836:+|nuORF	ENST00000318522.9_1_2:42557683-42557836:+|nuORF	ENST00000318522.9_1_2:42557683-42557836:+|nuORF	MSMS	A375_MHC_IP_R1	1	679.5396728515625	2	679.413737	1356.81292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.43	1	139.43	138.93	139.93	0								0	0	0	0.16334	1	53593	53593		1.3295	0.87119	1				11101	10674	7862	7928	10838	10838					0.14878755970858037
EKPEKFELDEG	11	Unmodified	_EKPEKFELDEG_					0	0	0			REV__ENSG00000111231|ENST00000228827|GPN3	REV__ENSG00000111231|ENST00000228827|GPN3	MSMS	A375_MHC_IP_R2	2	440.9326477050781	3	440.882114	1319.62451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.447	1	40.221	39.721	40.721	0.77451								0	0	0	0.16275	1	14565	14565		4.4062	1.3339	1		+		11102	17655	7863	7929	10839	10839					-0.022515664641105104
EKPGSPPPSPG	11	Unmodified	_EKPGSPPPSPG_					0	0	0			REV__SP7|p.G382S|1|0.43|ENSG00000170374|chr12:53328298-53328298|C/T|missense_variant	REV__SP7|p.G382S|1|0.43|ENSG00000170374|chr12:53328298-53328298|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	526.2190551757812	2	525.266739	1048.51892	-0.37881	-0.00019897	0.040695	2.1376E-05	-0.33811	-0.0001776	525.2667102381776	51.277	1.1653	51.277	50.663	51.829	0					61	22	4	0	0	0	0.69231	1	18132	18132		16.149	1.3108	1	46977000	+		11103	28027	7864	7930	10840	10840					-0.00339437799038933
EKPKKDQVVH	10	Unmodified	_EKPKKDQVVH_					0	0	0			REV__HUNK|p.A433V|1|0.11|ENSG00000142149|chr21:31990169-31990169|C/T|missense_variant	REV__HUNK|p.A433V|1|0.11|ENSG00000142149|chr21:31990169-31990169|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	606.1398315429688	2	604.343312	1206.67207	-0.76315	-0.00046121	0.1461	8.8293E-05	-0.61705	-0.00037291	604.3434109792424	29.864	1.0619	30.563	30.335	31.397	0.69872					63	20	5	0	0	0	0.70793	1	10472	10472		8.7454	0.58988	1	167820000	+		11104	26769	7865	7931	10841	10841					0.07700177317406087
EKPKTLQLR	9	Unmodified	_EKPKTLQLR_					0	0	0		nc|ENSG00000175267|A6NCI4-2|VWA3A;ENSG00000175267|ENST00000389398|VWA3A	nc|ENSG00000175267|A6NCI4-2|VWA3A	nc|ENSG00000175267|A6NCI4-2|VWA3A	MULTI-MSMS	A375_MHC_IP_R2	2	371.57757568359375	3	371.564391	1111.67134	0.50009	0.00018582	-0.33845	-0.00012575	0.16165	6.0062E-05	371.56424874033524	67.8	1.0675	68.535	68.255	69.323	0.73511					47	20	4	0	0	0	0.75032	1	25619	25619		2.4985	0.41248	1	18951000			11105	7946	7866	7932	10842	10842					0.11997382668369028
EKPLKKNI	8	Unmodified	_EKPLKKNI_					0	0	0			REV__ENST00000497411.5_1_3:33319004-33339218:+|nuORF	REV__ENST00000497411.5_1_3:33319004-33339218:+|nuORF	MSMS	A375_MHC_IP_R2	2	485.3551330566406	2	485.30821	968.601866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.42	1	142.45	141.95	142.95	0.030731								0	0	0	0.16876	1	55675	55675		5.2307	0	1		+		11106	17521	7867	7933	10843	10843					0.11630923719599195
EKPRQEEQQ	9	Unmodified	_EKPRQEEQQ_					0	0	0			REV__ENSG00000222018|ENST00000410005|C21orf140	REV__ENSG00000222018|ENST00000410005|C21orf140	MSMS	A375_MHC_IP_R2	2	391.1385192871094	3	391.194915	1170.56291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.12	1	103.88	103.38	104.38	0.76428								0	0	0	0.15486	1	39056	39056		2.086	0.49373	1		+		11107	22699	7868	7934	10844	10844					-0.015544533727052112
EKQLKEAGSM	10	Unmodified	_EKQLKEAGSM_					0	0	0			REV__ENSG00000183921|ENST00000602312|SDR42E2	REV__ENSG00000183921|ENST00000602312|SDR42E2	MSMS	A375_MHC_IP_R2	2	560.7106323242188	2	560.786981	1119.55941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.857	1	52.609	52.109	53.109	0.75225								0	0	0	0.14302	1	19527	19527		28.495	6.7479	1		+		11108	21789	7869	7935	10845	10845					0.004411605290670195
EKQLLQVRY	9	Unmodified	_EKQLLQVRY_					0	0	0		tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	392.5840148925781	3	392.896029	1175.66626	-0.14669	-5.7634E-05	-2.2444	-0.00088182	-2.3911	-0.00093945	392.89493204950224	24.082	0.50734	24.082	23.687	24.194	0					18	9	3	0	0	0	0.7911	1	6715	6715		7.609	2.893	1	4539900			11109	29667	7870	7936	10846	10846					0.08545078805764206
EKQMPKKY	8	Unmodified	_EKQMPKKY_					0	0	0		nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MULTI-MSMS	A375_MHC_IP_R1	1	351.59173583984375	3	351.191677	1050.5532	-0.29829	-0.00010476	0.38827	0.00013636	0.089977	3.1599E-05	351.1917304141402	32.964	0.40507	32.964	32.734	33.14	0					14	7	3	0	0	0	0.77123	1	10738	10738		10.824	3.215	1	4981500			11110	1717	7871	7937	10847	10847					0.02994687088221326
EKQPEEDFQ	9	Unmodified	_EKQPEEDFQ_					0	0	0		FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	383.6044616699219	3	383.840137	1148.49858	-0.53402	-0.00020498	1.1906	0.00045702	0.65663	0.00025204	383.8405483296004	25.05	0.25381	25.693	25.568	25.822	0.64368					7	4	2	0	0	0	0.46045	1	8356	8356		27.223	13.608	1	1163300			11111	8107	7872	7938	10848	10848					-0.06972653249522409
EKQQIREYIGV	11	Unmodified	_EKQQIREYIGV_					0	0	0			REV__nc|ENSG00000120645|Q9UPP2-2|IQSEC3	REV__nc|ENSG00000120645|Q9UPP2-2|IQSEC3	MULTI-SECPEP	A375_MHC_IP_R2	2	454.1372985839844	3	454.917381	1361.73031	-0.65709	-0.00029892	0.066774	3.0377E-05	-0.59031	-0.00026854	455.2517462607287	33.621	0.35514	34.373	34.095	34.45	0.75225					11	6	2	0	0	0	0.99482	1	12027	12027		6.2344	4.4921	1	1463800	+		11112	18129	7873	7939	10849	10849					0.06391814172025079
EKQQKEKW	8	Unmodified	_EKQQKEKW_					0	0	0			REV__ENST00000473051.1_1_10:74095570-74096546:-|nuORF	REV__ENST00000473051.1_1_10:74095570-74096546:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	551.9540405273438	2	552.29583	1102.57711	-0.65214	-0.00036017	0.14657	8.095E-05	-0.50557	-0.00027922	552.2957188613017	95.195	1.4199	95.195	94.497	95.917	0					58	27	3	0	0	0	0.9187	1	34958	34958		19.257	2.1441	1	5740700	+		11113	19646	7874	7940	10850	10850					0.029922438462335776
EKQQQEII	8	Unmodified	_EKQQQEII_					0	0	0			REV__nc|ENSG00000134668|Q6ZMY3-2|SPOCD1	REV__nc|ENSG00000134668|Q6ZMY3-2|SPOCD1	MULTI-SECPEP	A375_MHC_IP_R1	1	507.6560363769531	2	508.274564	1014.53457	-0.32855	-0.00016699	0.076025	3.8642E-05	-0.25252	-0.00012835	508.2746551882487	28.553	0.35509	28.553	28.39	28.745	0					12	6	2	0	0	0	0.93661	1	8792	8792		15.847	5.0233	1	1268300	+		11114	18793	7875	7941	10851	10851					0.027888487180121047
EKQRQHSREMF	11	Unmodified	_EKQRQHSREMF_					0	0	0			REV__ENSG00000166004|ENST00000325212|CEP295	REV__ENSG00000166004|ENST00000325212|CEP295	MSMS	A375_MHC_IP_R2	2	492.47735595703125	3	492.577253	1474.70993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.605	1	42.38	41.88	42.88	0.77451								0	0	0	0.16302	1	15445	15445		1.2148	0	1		+		11115	20642	7876	7942	10852	10852					-0.008436797594185919
EKQRQWKRKRR	11	Unmodified	_EKQRQWKRKRR_					0	0	0			REV__ENST00000418635.6_1_6:35378793-35391776:+|nuORF	REV__ENST00000418635.6_1_6:35378793-35391776:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	534.0523681640625	3	533.653596	1597.93896	-0.98946	-0.00052803	-1.1482	-0.00061276	-2.1377	-0.0011408	533.6529343060959	139.14	0.55472	139.14	139.01	139.57	0					12	10	2	0	0	0	0.73934	1	53524	53524		0	0	1	1335800	+		11116	23899	7877	7943	10853	10853					0.16390700319470852
EKRELEKL	8	Unmodified	_EKRELEKL_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	A375_MHC_IP_R2	2	523.2050170898438	2	522.806031	1043.59751	-0.59392	-0.00031051	-0.94885	-0.00049606	-1.5428	-0.00080657	522.805890797738	30.82	0.96079	31.538	30.962	31.923	0.71857					30	18	3	0	0	0	0.60112	1	10835	10835		41.956	2.0059	1	9170100	+		11117	16376	7878	7944	10854	10854					0.07745414506052839
EKRGSNLEV	9	Unmodified	_EKRGSNLEV_					0	0	0		ENST00000465020.5_1_3:38519799-38524820:+|nuORF;ENSG00000114739|ENST00000352511|ACVR2B	ENST00000465020.5_1_3:38519799-38524820:+|nuORF	ENST00000465020.5_1_3:38519799-38524820:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	516.2103881835938	2	516.277638	1030.54072	-0.47482	-0.00024514	0.53917	0.00027836	0.064349	3.3222E-05	516.2776879156074	38.61	0.56285	38.61	38.319	38.882	0					15	10	2	0	0	0	0.46045	1	13127	13127		22.736	3.4793	1	2167400			11118	3240	7879	7945	10855	10855					0.026673669495039576
EKRKTLYN	8	Unmodified	_EKRKTLYN_					0	0	0		ENST00000226951.10_1_4:10491877-10492063:-|nuORF	ENST00000226951.10_1_4:10491877-10492063:-|nuORF	ENST00000226951.10_1_4:10491877-10492063:-|nuORF	MSMS	A375_MHC_IP_R2	2	351.1086120605469	3	351.201341	1050.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.852	1	46.617	46.117	47.117	0.76519								0	0	0	0.16876	1	17154	17154		6.7232	1.8262	1				11119	10123	7880	7946	10856	10856					0.058925477088678235
EKRLHRRWRSR	11	Unmodified	_EKRLHRRWRSR_					0	0	0		OSBPL3|p.S272L|1|0.29|ENSG00000070882|chr7:24863255-24863255|G/A|missense_variant	OSBPL3|p.S272L|1|0.29|ENSG00000070882|chr7:24863255-24863255|G/A|missense_variant	OSBPL3|p.S272L|1|0.29|ENSG00000070882|chr7:24863255-24863255|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	527.7296752929688	3	527.309941	1578.90799	-0.85848	-0.00045268	-0.7274	-0.00038356	-1.5859	-0.00083625	527.3091157883592	148.91	0.7561	148.91	148.66	149.41	0					19	14	2	0	0	0	1.0015	1	56935	56935		0.094841	0	1	174650			11120	15098	7881	7947	10857	10857					0.14169547005235472
EKRLTPRHI	9	Unmodified	_EKRLTPRHI_					0	0	0		ENSG00000240563|ENST00000498273|L1TD1	ENSG00000240563|ENST00000498273|L1TD1	ENSG00000240563|ENST00000498273|L1TD1	MULTI-MSMS	A375_MHC_IP_R1	1	383.9440002441406	3	383.899885	1148.67783	0.01246	4.7833E-06	0.071727	2.7536E-05	0.084187	3.2319E-05	383.8998294560695	25.991	0.65808	25.991	25.765	26.423	0					24	12	3	0	0	0	0.65748	3	7659	7659;7684;7759		10.8	10.8	1	8121400			11121	9775	7882	7948	10858;10859;10860	10858					0.10943320619730912
EKRQIHRKRYL	11	Unmodified	_EKRQIHRKRYL_					0	0	0			REV__ENSG00000100225|ENST00000266087|FBXO7	REV__ENSG00000100225|ENST00000266087|FBXO7	MSMS	A375_MHC_IP_R2	2	763.9544677734375	2	763.954958	1525.89536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.002	1	92.741	92.241	93.241	0.73902								0	0	0	0.16302	1	34990	34990		2.9952	1.8019	1		+		11122	17061	7883	7949	10861	10861					0.15345090822370366
EKRRKFLERNR	11	Unmodified	_EKRRKFLERNR_					0	0	0		nc|ENSG00000115966|P15336-2|ATF2;nc|ENSG00000115966|P15336-4|ATF2;nc|ENSG00000115966|P15336-5|ATF2;ENSG00000115966|ENST00000264110|ATF2	nc|ENSG00000115966|P15336-2|ATF2	nc|ENSG00000115966|P15336-2|ATF2	MULTI-SECPEP	A375_MHC_IP_R2	2	511.0335388183594	3	511.302452	1530.88553	-0.56104	-0.00028686	0.64192	0.00032822	0.080878	4.1353E-05	511.3029214301538	137.42	1.0717	137.51	137.15	138.22	0.083969					26	20	2	0	0	0	1.0015	1	53948	53948		0.094841	0.094841	1	1098700			11123	3356	7884	7950	10862	10862					0.1413190281698462
EKRSSSRWL	9	Unmodified	_EKRSSSRWL_					0	0	0			REV__STOX1|p.L320S|1|0.33|ENSG00000165730|chr10:68884755-68884755|T/C|missense_variant	REV__STOX1|p.L320S|1|0.33|ENSG00000165730|chr10:68884755-68884755|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	383.6044616699219	3	383.543878	1147.60981	-0.54485	-0.00020897	0.61492	0.00023585	0.070071	2.6875E-05	383.5441399246559	25.307	0.50958	25.95	25.719	26.229	0.64368					17	9	2	0	0	0	0.38603	1	8356	8356		23.79	5.4167	1	8599200	+		11124	28059	7885	7951	10863	10863					0.04190450969122139
EKRYNEET	8	Unmodified	_EKRYNEET_					0	0	0			REV__tr|U7SM47|U7SM47_FUSNUUDP-3-O-acyl-N-acetylglucosaminedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxCPE=3SV=1	REV__tr|U7SM47|U7SM47_FUSNUUDP-3-O-acyl-N-acetylglucosaminedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxCPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	534.6849975585938	2	534.751453	1067.48835	-0.89527	-0.00047875	0.3809	0.00020369	-0.51437	-0.00027506	534.7514477846929	28.012	0.45193	28.012	27.836	28.288	0					13	8	2	0	0	0	0.95424	1	8679	8679		13.906	6.6168	1	2630400	+		11125	28289	7886	7952	10864	10864					-0.042692161840932386
EKSDKLTEEI	10	Unmodified	_EKSDKLTEEI_					0	0	0			REV__tr|U7T2B6|U7T2B6_FUSNULonproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lonPE=2SV=1	REV__tr|U7T2B6|U7T2B6_FUSNULonproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lonPE=2SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	397.6275329589844	3	397.874959	1190.60305	-0.32033	-0.00012745	2.4624	0.00097975	2.1421	0.00085229	397.8762170883192	35.395	0.50623	36.158	35.98	36.486	0.76338					14	9	2	0	0	0	0.89369	1	12763	12763		12.228	0.70971	1	1976300	+		11126	28734	7887	7953	10865	10865					0.015370485072025986
EKSKWDERY	9	Unmodified	_EKSKWDERY_					0	0	0			REV__ENSG00000198900|ENST00000361337|TOP1	REV__ENSG00000198900|ENST00000361337|TOP1	MSMS	A375_MHC_IP_R2	2	620.7265625	2	620.801477	1239.5884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.444	1	29.123	28.623	29.623	0.67857								0	0	0	0.15468	1	9819	9819		13.906	0.86358	1		+		11127	22442	7888	7954	10866	10866					-0.02180978850287829
EKTHRVLRV	9	Unmodified	_EKTHRVLRV_					0	0	0		ENSG00000182896|ENST00000576060|TMEM95;nc|ENSG00000182896|Q3KNT9-2|TMEM95;nc|ENSG00000182896|Q3KNT9-3|TMEM95	ENSG00000182896|ENST00000576060|TMEM95	ENSG00000182896|ENST00000576060|TMEM95	MULTI-MSMS	A375_MHC_IP_R1	1	379.9483947753906	3	379.899885	1136.67783	0.062393	2.3703E-05	0.61716	0.00023446	0.67955	0.00025816	379.8999968814485	41.67	0.30755	41.67	41.521	41.828	0					7	5	2	0	0	0	0.65748	1	14371	14371		10.8	1.2555	1	631790			11128	8445	7889	7955	10867	10867					0.11495320619746963
EKTNQMAATIK	11	Unmodified	_EKTNQMAATIK_					0	0	0		nc|ENSG00000018189|Q7L099|RUFY3;nc|ENSG00000018189|Q7L099-2|RUFY3;nc|ENSG00000018189|Q7L099-4|RUFY3;ENSG00000018189|ENST00000381006|RUFY3	nc|ENSG00000018189|Q7L099|RUFY3	nc|ENSG00000018189|Q7L099|RUFY3	MULTI-MSMS	A375_MHC_IP_R2	2	412.14019775390625	3	412.220184	1233.63872	-0.14352	-5.9162E-05	-1.2387	-0.00051064	-1.3823	-0.0005698	412.21909987096353	40.768	0.7627	41.543	41.031	41.794	0.77451					19	14	2	0	0	0	0.72494	1	15020	15020		7.846	0	1	2160000			11129	1044	7890	7956	10868	10868					0.03124807483186487
EKTQQAQAAL	10	Unmodified	_EKTQQAQAAL_					0	0	0		nc|ENSG00000008323|Q3KR16-2|PLEKHG6;ENSG00000008323|ENST00000684764|PLEKHG6	nc|ENSG00000008323|Q3KR16-2|PLEKHG6	nc|ENSG00000008323|Q3KR16-2|PLEKHG6	MULTI-MSMS	A375_MHC_IP_R1	1	544.18408203125	2	544.290745	1086.56694	-0.34443	-0.00018747	-0.47475	-0.0002584	-0.81918	-0.00044587	544.2904661668166	21.224	0.86251	21.224	20.946	21.808	0					29	16	2	0	0	0	0.63639	1	5469	5469		18.146	1.0335	1	23385000			11130	959	7891	7957	10869	10869					0.027116361209891693
EKTQQAQAAL	10	Unmodified	_EKTQQAQAAL_					0	0	0		nc|ENSG00000008323|Q3KR16-2|PLEKHG6;ENSG00000008323|ENST00000684764|PLEKHG6	nc|ENSG00000008323|Q3KR16-2|PLEKHG6	nc|ENSG00000008323|Q3KR16-2|PLEKHG6	MULTI-SECPEP	A375_MHC_IP_R1	1	363.62884521484375	3	363.196256	1086.56694	0.40306	0.00014639	-0.033791	-1.2273E-05	0.36927	0.00013412	363.19619229227834	21.225	1.0193	21.225	20.435	21.454	0					55	19	6	0	0	0	0.47386	1	5552	5552		28.234	0	1	48104000			11131	959	7891	7957	10870	10870					0.027116361209891693
EKVDERQF	8	Unmodified	_EKVDERQF_					0	0	0			REV__nc|ENSG00000241635|P22309-2|UGT1A1	REV__nc|ENSG00000241635|P22309-2|UGT1A1	MSMS	A375_MHC_IP_R1	1	525.702880859375	2	525.764363	1049.51417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.681	1	27.681	27.181	28.181	0								0	0	0	0.16876	1	8432	8432		19.439	1.304	1		+		11132	22788	7892	7958	10871	10871					-0.008603219418091612
EKVDTVLRDLS	11	Unmodified	_EKVDTVLRDLS_					0	0	0			REV__nc|ENSG00000076716|O75487-2|GPC4	REV__nc|ENSG00000076716|O75487-2|GPC4	MULTI-MSMS	A375_MHC_IP_R2	2	425.96990966796875	3	425.56987	1273.68778	-0.51572	-0.00021948	0.36939	0.0001572	-0.14633	-6.2274E-05	425.57010553973134	24.492	0.4047	25.136	25.06	25.465	0.64368					9	7	2	0	0	0	0.73388	1	8094	8094		5.1984	1.6058	1	4997700	+		11133	16680	7893	7959	10872	10872					0.061884190438149744
EKVFYKQVE	9	Unmodified	_EKVFYKQVE_					0	0	0			REV__nc|ENSG00000183833|Q7Z4T9-1|CFAP91	REV__nc|ENSG00000183833|Q7Z4T9-1|CFAP91	MULTI-MSMS	A375_MHC_IP_R1	1	390.94378662109375	3	390.544885	1168.61282	0.064174	2.5063E-05	1.6677	0.0006513	1.7318	0.00067636	390.54386706853643	25.51	0.71178	25.51	25.255	25.966	0					25	13	3	0	0	0	0.6421	1	7488	7488		12.175	4.5658	1	3215800	+		11134	21785	7894	7960	10873	10873					0.03526281303243195
EKVLWTAITL	10	Unmodified	_EKVLWTAITL_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;ENST00000495368.1_1_10:12171786-12184437:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MSMS	A375_MHC_IP_R1	1	391.9366455078125	3	391.90078	1172.68051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.188	1	25.188	24.688	25.688	0								0	0	0	0.15341	1	7302	7302		9.7643	4.8672	1				11135	1290	7895	7961	10874	10874					0.10107731234029416
EKVPRRYYKKE	11	Unmodified	_EKVPRRYYKKE_					0	0	0			REV__tr|U7SUS5|U7SUS5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00987PE=4SV=1	REV__tr|U7SUS5|U7SUS5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00987PE=4SV=1	MSMS	A375_MHC_IP_R2	2	748.5634155273438	2	748.422625	1494.8307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.966	1	99.726	99.226	100.23	0.75977								0	0	0	0.16279	1	37542	37542		4.1895	1.1943	1		+		11136	28569	7896	7962	10875	10875					0.10307471225655718
EKVSQLMEW	9	Unmodified	_EKVSQLMEW_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1;nc|ENSG00000102158|Q9H0U3-2|MAGT1;ENST00000476168.1_1_X:77112151-77150907:-|nuORF	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	MULTI-MSMS	A375_MHC_IP_R2	2	575.1920166015625	2	575.284074	1148.5536	-0.48068	-0.00027653	-1.4115	-0.00081202	-1.8922	-0.0010885	575.28211900281	71.534	0.70965	72.268	71.857	72.567	0.73421					21	13	2	0	0	0	0.32092	1	27194	27194		29.082	0	1	3078400			11137	2360	7897	7963	10876	10876					-0.014739379825869037
EKVYQNHVQ	9	Unmodified	_EKVYQNHVQ_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-SECPEP	A375_MHC_IP_R1	1	382.596435546875	3	382.196367	1143.56727	0.021112	8.0689E-06	0.010289	3.9325E-06	0.031401	1.2001E-05	382.1963505142775	26.043	0.35487	26.043	25.917	26.271	0					14	6	3	0	0	0	0.50702	1	7745	7745		23.79	1.9903	1	4254900			11138	2226	7898	7964	10877	10877					0.001230558408451543
EKWLRDHKRR	10	Unmodified	_EKWLRDHKRR_					0	0	0		ENSG00000204815|ENST00000377540|ODAD4	ENSG00000204815|ENST00000377540|ODAD4	ENSG00000204815|ENST00000377540|ODAD4	MULTI-MSMS	A375_MHC_IP_R1	1	713.3060913085938	2	712.405101	1422.79565	-0.94242	-0.00067139	-0.18583	-0.00013239	-1.1283	-0.00080378	712.4047170188632	143.09	0.65649	143.09	142.64	143.29	0					28	12	4	0	0	0	0.72078	1	54870	54870		2.9952	0.49676	1	2362900			11139	9480	7899	7965	10878	10878					0.10116273208382154
EKYFVKDNE	9	Unmodified	_EKYFVKDNE_					0	0	0			REV__tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1;REV__tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	REV__tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	391.9549865722656	3	391.192511	1170.5557	0.13926	5.4476E-05	0.41688	0.00016308	0.55613	0.00021755	391.192455024942	40.812	0.40369	40.812	40.609	41.013	0					12	7	2	0	0	0	0.74875	1	14000	14000		7.1017	0	1	1501700	+		11140	28647;28390	7900	7966	10879	10879					-0.022751859731215518
EKYFVKDNE	9	Unmodified	_EKYFVKDNE_					0	0	0			REV__tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1;REV__tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	REV__tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		3	391.192511	1170.5557	-0.22697	-8.8788E-05	0.20005	7.8258E-05	-0.026917	-1.053E-05	391.19271008663594	40.091	0.40535	40.866	40.626	41.031	0.77451	0.027189	-0.00013586	NaN	7.1017	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1362400	+		11141	28647;28390	7900	7966							-0.022751859731215518
EKYHRRQHSFD	11	Unmodified	_EKYHRRQHSFD_					0	0	0			REV__nc|ENSG00000112175|P22003-2|BMP5	REV__nc|ENSG00000112175|P22003-2|BMP5	MSMS	A375_MHC_IP_R1	1	501.64996337890625	3	501.579762	1501.71746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.073	1	29.073	28.573	29.573	0								0	0	0	0.1628	1	9046	9046		4.1166	0	1		+		11142	17714	7901	7967	10880	10880					-0.013332041674857464
EKYHYVLWKEK	11	Unmodified	_EKYHYVLWKEK_					0	0	0		ENST00000355774.6_2_14:75497265-75497367:-|nuORF	ENST00000355774.6_2_14:75497265-75497367:-|nuORF	ENST00000355774.6_2_14:75497265-75497367:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.6287841796875	3	508.273276	1521.798	-0.28084	-0.00014275	2.2175	0.0011271	1.9367	0.00098437	508.27528709140597	88.698	0.86422	88.698	88.307	89.171	0					24	16	3	0	0	0	1.0008	1	32434	32434		0.92553	0	1	2533700			11143	10957	7902	7968	10881	10881					0.05797264102807276
EKYLIFEDF	9	Unmodified	_EKYLIFEDF_					0	0	0			REV__nc|ENSG00000104970|Q9H7L2|KIR3DX1	REV__nc|ENSG00000104970|Q9H7L2|KIR3DX1	MULTI-SECPEP	A375_MHC_IP_R1	1	401.3028869628906	3	401.869257	1202.58594	-0.50865	-0.00020441	0.86117	0.00034608	0.35252	0.00014167	401.8694637433092	27.832	0.55507	27.832	27.432	27.987	0					17	10	2	0	0	0	0.775	1	8564	8564		7.1017	0.47135	1	2561600	+		11144	27158	7903	7969	10882	10882					-0.007248273079540013
EKYPKEGTHV	10	Unmodified	_EKYPKEGTHV_					0	0	0			REV__ZNF45|p.G166E|1|0.25|ENSG00000124459|chr19:43914939-43914939|C/T|missense_variant	REV__ZNF45|p.G166E|1|0.25|ENSG00000124459|chr19:43914939-43914939|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	395.9767150878906	3	396.540022	1186.59824	-0.38146	-0.00015126	-0.04763	-1.8887E-05	-0.42909	-0.00017015	396.53994758311654	18.905	0.23048	19.508	19.452	19.683	0.60308					5	4	2	0	0	0	0.90144	1	5638	5638		12.228	7.8214	1	7702100	+		11145	29041	7904	7970	10883	10883					0.012402091550939076
ELADDKLRQ	9	Unmodified	_ELADDKLRQ_					0	0	0			REV__EVC2|p.P815L|1|0.48|ENSG00000173040|chr4:5622594-5622594|G/A|missense_variant	REV__EVC2|p.P815L|1|0.48|ENSG00000173040|chr4:5622594-5622594|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	363.62896728515625	3	363.196256	1086.56694	0.24014	8.7219E-05	-1.067	-0.00038752	-0.82684	-0.0003003	363.1958728524096	23.127	0.4562	23.127	22.873	23.33	0					12	8	2	0	0	0	0.4261	1	6261	6261		17.443	0	1	4575500	+		11146	26596	7905	7971	10884	10884					0.027116361209891693
ELADVRAQI	9	Unmodified	_ELADVRAQI_					0	0	0			REV__nc|ENSG00000070182|P11277-3|SPTB	REV__nc|ENSG00000070182|P11277-3|SPTB	MULTI-MSMS	A375_MHC_IP_R2	2	508.1820068359375	2	507.782556	1013.55056	-1.0116	-0.00051368	0.92201	0.00046818	-0.089599	-4.5497E-05	507.78256032081794	28.206	0.81216	28.884	28.401	29.214	0.67857					25	15	3	0	0	0	0.12771	1	9774	9774		45.7	0	1	4580500	+		11147	16568	7906	7972	10885	10885					0.04432554954905754
ELAEADTDRHW	11	Unmodified	_ELAEADTDRHW_					0	0	0			REV__ENST00000392225.7_1_19:35616099-35617731:-|nuORF	REV__ENST00000392225.7_1_19:35616099-35617731:-|nuORF	MSMS	A375_MHC_IP_R2	2	671.4921875	2	671.804748	1341.59494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.795	1	64.535	64.035	65.035	0.74022								0	0	0	0.16213	1	24191	24191		7.609	0.50723	1		+		11148	19854	7907	7973	10886	10886					-0.06219085689554049
ELAEHLEW	8	Unmodified	_ELAEHLEW_					0	0	0			REV__ENST00000532108.1_1_11:4623360-4626734:-|nuORF	REV__ENST00000532108.1_1_11:4623360-4626734:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	514.2238159179688	2	513.748182	1025.48181	-0.85094	-0.00043717	-0.124	-6.3707E-05	-0.97494	-0.00050087	513.7481436899997	50.912	0.45416	51.666	51.462	51.917	0.75406					13	8	2	0	0	0	0.75805	1	19229	19229		18.135	2.2878	1	791190	+		11149	20749	7908	7974	10887	10887					-0.029911093447935855
ELAHHLAMLD	10	Unmodified	_ELAHHLAMLD_					0	0	0			REV__ENST00000496494.5_1_8:72111577-72234167:-|nuORF	REV__ENST00000496494.5_1_8:72111577-72234167:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	575.2012329101562	2	575.289691	1148.56483	-0.34779	-0.00020008	-0.91914	-0.00052877	-1.2669	-0.00072885	575.2895891743468	80.493	0.65863	80.493	80.238	80.897	0					18	12	2	0	0	0	0.6774	1	29495	29495		21.537	4.4241	1	2589700	+		11150	17314	7909	7975	10888	10888					-0.003511158884748511
ELAHVEALDP	10	Unmodified	_ELAHVEALDP_					0	0	0			REV__ENSG00000198677|ENST00000358746|SKIC3	REV__ENSG00000198677|ENST00000358746|SKIC3	MULTI-SECPEP	A375_MHC_IP_R2	2	547.6455688476562	2	547.279846	1092.54514	-0.7701	-0.00042146	-0.61627	-0.00033727	-1.3864	-0.00075873	547.2796383896836	70.586	0.60899	71.32	70.844	71.453	0.73421					14	11	2	0	0	0	0.74754	1	26774	26774		17.113	6.289	1	4799900	+		11151	22395	7910	7976	10889	10889					0.002568313724395921
ELAKELPQV	9	Unmodified	_ELAKELPQV_					0	0	0		ENSG00000108010|ENST00000331244|GLRX3;tr|U7ST49|U7ST49_FUSNUProtein-exportmembraneproteinSecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secFPE=3SV=1	ENSG00000108010|ENST00000331244|GLRX3	ENSG00000108010|ENST00000331244|GLRX3	MULTI-SECPEP	A375_MHC_IP_R1	1	514.1951904296875	2	513.795132	1025.57571	-0.55478	-0.00028505	-0.2314	-0.00011889	-0.78618	-0.00040394	513.795364105382	58.28	1.1669	58.28	57.72	58.887	0					33	22	2	0	0	0	0.013591	1	20925	20925		118.07	29.115	1	6530000			11152	2777	7911	7977	10890	10890					0.06394609757467151
ELAKELPQV	9	Unmodified	_ELAKELPQV_					0	0	0		ENSG00000108010|ENST00000331244|GLRX3;tr|U7ST49|U7ST49_FUSNUProtein-exportmembraneproteinSecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secFPE=3SV=1	ENSG00000108010|ENST00000331244|GLRX3	ENSG00000108010|ENST00000331244|GLRX3	MULTI-SECPEP	A375_MHC_IP_R2	2	514.1943359375	2	513.795132	1025.57571	-1.0799	-0.00055486	-1.0666	-0.00054799	-2.1465	-0.0011029	513.7951158095531	57.497	0.81077	58.246	57.968	58.779	0.74894					26	15	2	0	0	0	0.028087	1	21731	21731		106.94	44.367	1	8795600			11153	2777	7911	7977	10891	10891					0.06394609757467151
ELAKNVIYRY	10	Unmodified	_ELAKNVIYRY_					0	0	0		ENSG00000049883|ENST00000380639|PTCD2	ENSG00000049883|ENST00000380639|PTCD2	ENSG00000049883|ENST00000380639|PTCD2	MULTI-SECPEP	A375_MHC_IP_R1	1	424.2381591796875	3	423.571434	1267.69247	-0.28904	-0.00012243	0.70289	0.00029772	0.41385	0.0001753	423.57182335281277	38.449	0.30801	38.449	38.218	38.526	0					8	5	2	0	0	0	0.94651	1	13058	13058		3.5871	0.26742	1	1410800			11154	1225	7912	7978	10892	10892					0.0693334797724674
ELAKQVIEY	9	Unmodified	_ELAKQVIEY_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-SECPEP	A375_MHC_IP_R1	1	547.2001342773438	2	546.800414	1091.58628	-0.58272	-0.00031863	0.14633	8.0015E-05	-0.43639	-0.00023862	546.8004226064616	76.134	0.55542	76.134	75.865	76.421	0					28	10	4	0	0	0	0.064992	1	27736	27736		68.081	9.4019	1	6430100			11155	2074	7913	7979	10893	10893					0.04414592411899321
ELAKQVIEY	9	Unmodified	_ELAKQVIEY_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-SECPEP	A375_MHC_IP_R2	2	546.6663818359375	2	546.800414	1091.58628	-0.81703	-0.00044675	1.0975	0.00060009	0.28043	0.00015334	546.8004255057582	75.4	0.50925	76.141	75.825	76.334	0.74052					23	9	4	0	0	0	0.047455	1	28619	28619		68.081	9.4019	1	6590800			11156	2074	7913	7979	10894	10894					0.04414592411899321
ELAKYTACLY	10	Unmodified	_ELAKYTACLY_					0	0	0			REV__nc|ENSG00000157106|Q96Q15-2|SMG1;REV__ENST00000566127.1_1_16:29562517-29572889:-|nuORF	REV__nc|ENSG00000157106|Q96Q15-2|SMG1	MULTI-SECPEP	A375_MHC_IP_R1	1	588.3644409179688	2	587.794275	1173.574	-0.29238	-0.00017186	-0.47106	-0.00027689	-0.76345	-0.00044875	588.2956095137368	73.656	0.55743	73.656	73.285	73.843	0					15	10	2	0	0	0	0.83355	1	26822	26822		17.113	5.6182	1	2060800	+		11157	20012;26239	7914	7980	10895	10895					-0.005847673227890482
ELALDLEDL	9	Unmodified	_ELALDLEDL_					0	0	0		nc|ENSG00000157404|P10721-2|KIT;ENSG00000157404|ENST00000288135|KIT;ENST00000512959.1_1_4:55595508-55599400:+|nuORF;nc|ENSG00000157404|P10721-4|KIT	nc|ENSG00000157404|P10721-2|KIT	nc|ENSG00000157404|P10721-2|KIT	MSMS	A375_MHC_IP_R1	1	515.6944580078125	2	515.76878	1029.52301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.192	1	79.192	78.692	79.692	0								0	0	0	0.14677	1	28905	28905		26.884	0	1				11158	6241	7915	7981	10896	10896					0.009426069039818685
ELALRLTEY	9	Unmodified	_ELALRLTEY_					0	0	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MULTI-SECPEP	A375_MHC_IP_R1	1	554.7061157226562	2	554.305864	1106.59717	-0.61492	-0.00034085	0.71032	0.00039373	0.0954	5.2881E-05	554.3065608162946	83.659	0.50645	83.659	83.38	83.887	0					14	9	2	0	0	0	0.087712	1	30613	30613		75.761	28.012	1	2079500			11159	3312	7916	7982	10897	10897					0.048139947861727705
ELALRLTEY	9	Unmodified	_ELALRLTEY_					0	0	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MULTI-SECPEP	A375_MHC_IP_R2	2	554.7056274414062	2	554.305864	1106.59717	-0.7768	-0.00043059	-0.4139	-0.00022943	-1.1907	-0.00066002	554.3053674642855	82.779	0.6537	83.522	83.297	83.951	0.74293					16	12	2	0	0	0	0.11849	1	31483	31483		61.602	25.475	1	1595300			11160	3312	7916	7982	10898	10898					0.048139947861727705
ELALVRQVRK	10	Unmodified	_ELALVRQVRK_					0	0	0		tr|U7SJ60|U7SJ60_FUSNUGTPaseHflXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hflXPE=3SV=1	tr|U7SJ60|U7SJ60_FUSNUGTPaseHflXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hflXPE=3SV=1	tr|U7SJ60|U7SJ60_FUSNUGTPaseHflXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hflXPE=3SV=1	MSMS	A375_MHC_IP_R2	2	606.345458984375	2	606.382771	1210.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.885	1	100.65	100.15	101.15	0.76278								0	0	0	0.15539	1	37885	37885		6.2058	2.9245	1				11161	29444	7917	7983	10899	10899					0.15404449342349835
ELANHLFYL	9	Unmodified	_ELANHLFYL_					0	0	0		ENSG00000134627|ENST00000299001|PIWIL4	ENSG00000134627|ENST00000299001|PIWIL4	ENSG00000134627|ENST00000299001|PIWIL4	MULTI-SECPEP	A375_MHC_IP_R1	1	560.6947021484375	2	560.295299	1118.57605	-0.43971	-0.00024637	0.2064	0.00011564	-0.23331	-0.00013073	560.295164679474	101.05	0.55638	101.05	100.79	101.34	0					15	10	3	0	0	0	0.38578	1	37135	37135		41.84	5.7126	1	1391000			11162	4591	7918	7984	10900	10900					0.02150029477343196
ELAQQIQKV	9	Unmodified	_ELAQQIQKV_					0	0	0		EIF4A2|p.F391Lfs*14|1|0.08|ENSG00000156976|chr3:186789217-186789218|TC/-|frameshift_variant;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;EIF4A2|p.K194Rfs*11|1|0.29|ENSG00000156976|chr3:186786226-186786226|A/-|frameshift_variant;ENST00000466362.1_1_3:186502860-186504086:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000550578.1_1_12:53547103-53547616:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF	EIF4A2|p.F391Lfs*14|1|0.08|ENSG00000156976|chr3:186789217-186789218|TC/-|frameshift_variant;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-SECPEP	A375_MHC_IP_R1	1	529.2057495117188	2	528.806031	1055.59751	-0.61886	-0.00032726	0.08469	4.4785E-05	-0.53417	-0.00028247	528.8060630202518	39.53	0.40544	39.53	39.238	39.643	0					12	7	3	0	0	0	0.04038	1	13529	13529		96.111	20.35	1	2493100			11163	6498;13685;832	7919	7985	10901	10901					0.07193414506036788
ELAQQVQQV	9	Unmodified	_ELAQQVQQV_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.Y425Lfs*24|1|0.13|ENSG00000108654|chr17:64500716-64500717|-/A|frameshift_variant;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5;ENST00000432525.5_1_22:38886367-38903636:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	MULTI-SECPEP	A375_MHC_IP_R1	1	522.1795043945312	2	521.780013	1041.54547	-0.65805	-0.00034336	0.42017	0.00021923	-0.23788	-0.00012412	521.7800944554324	46.792	0.50955	46.792	46.545	47.055	0					18	9	3	0	0	0	0.025235	1	16439	16439		96.111	14.221	1	2695100			11164	2826;2131	7920	7986	10902	10902					0.026362510922808724
ELAQQVQQV	9	Unmodified	_ELAQQVQQV_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.Y425Lfs*24|1|0.13|ENSG00000108654|chr17:64500716-64500717|-/A|frameshift_variant;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5;ENST00000432525.5_1_22:38886367-38903636:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	MULTI-SECPEP	A375_MHC_IP_R2	2	522.179443359375	2	521.780013	1041.54547	-0.53039	-0.00027675	-0.63394	-0.00033078	-1.1643	-0.00060752	521.7798037822032	46.166	0.45411	46.931	46.654	47.108	0.76519					14	8	2	0	0	0	0.034037	1	17300	17300		78.728	0	1	2490700			11165	2826;2131	7920	7986	10903	10903					0.026362510922808724
ELAQSEAYF	9	Unmodified	_ELAQSEAYF_					0	0	0		ENST00000531387.5_1_11:3022346-3069017:-|nuORF;nc|ENSG00000110619|P49589-2|CARS1;nc|ENSG00000110619|P49589|CARS1;ENSG00000110619|ENST00000380525|CARS1;ENST00000526890.5_1_11:3039642-3048038:-|nuORF	ENST00000531387.5_1_11:3022346-3069017:-|nuORF	ENST00000531387.5_1_11:3022346-3069017:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	529.205322265625	2	529.245472	1056.47639	-0.61741	-0.00032676	0.49722	0.00026315	-0.12019	-6.3609E-05	529.2455826124203	72.779	2.3883	73.514	72.721	75.109	0.7354					108	46	5	0	0	0	0.58047	1	27372	27372		15.847	2.3393	1	19715000			11166	13169	7921	7987	10904	10904					-0.04958832927286494
ELAQTAQP	8	Unmodified	_ELAQTAQP_					0	0	0			REV__ENSG00000226321|ENST00000690015|CROCC2	REV__ENSG00000226321|ENST00000690015|CROCC2	MULTI-MSMS	A375_MHC_IP_R2	2	429.663330078125	2	429.2218	856.429047	-0.26864	-0.00011531	-0.018901	-8.1126E-06	-0.28754	-0.00012342	429.22173687838483	40.282	0.86358	41.056	40.676	41.54	0.77451					25	16	2	0	0	0	0.70783	1	14827	14827		32.305	5.4218	1	8425700	+		11167	22720	7922	7988	10905	10905					-0.004910674076086252
ELARLLQKMTI	11	Unmodified	_ELARLLQKMTI_					0	0	0			REV__ENST00000599510.1_1_19:49299609-49300643:-|nuORF	REV__ENST00000599510.1_1_19:49299609-49300643:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	439.6622314453125	3	439.263724	1314.76934	-0.58155	-0.00025545	-1.7617	-0.00077387	-2.3433	-0.0010293	439.2625774388934	33.305	0.50927	34.057	33.789	34.298	0.75225					29	9	4	0	0	0	0.73421	1	11882	11882		4.8923	0.77569	1	14944000	+		11168	17391	7923	7989	10906	10906					0.12454823202074294
ELARLLQKMTI	11	Unmodified	_ELARLLQKMTI_					0	0	0			REV__ENST00000599510.1_1_19:49299609-49300643:-|nuORF	REV__ENST00000599510.1_1_19:49299609-49300643:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	439.263724	1314.76934	-0.58155	-0.00025545	-1.7617	-0.00077387	-2.3433	-0.0010293	439.2625774388934	33.305	0.50927	34.057	33.789	34.298	0.75225	-0.0359	-3.0327E-05	NaN	4.8923	29	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14944000	+		11169	17391	7923	7989							0.12454823202074294
ELARMLREY	9	Unmodified	_ELARMLREY_					0	0	0		ENSG00000186049|ENST00000305748|KRT73;CON__Q32MB2;ENSG00000139648|ENST00000267119|KRT71;CON__Q3SY84;ENSG00000170477|ENST00000551956|KRT4;ENSG00000170484|ENST00000305620|KRT74;CON__Q7RTS7;CON__Q9R0H5;CON__P19013;nc|ENSG00000170486|Q14CN4-3|KRT72;nc|ENSG00000170486|Q14CN4-2|KRT72;ENSG00000170486|ENST00000293745|KRT72;CON__Q14CN4-1	ENSG00000186049|ENST00000305748|KRT73;ENSG00000170484|ENST00000305620|KRT74;CON__Q9R0H5;CON__P19013;nc|ENSG00000170486|Q14CN4-3|KRT72	CON__Q9R0H5	MULTI-SECPEP	A375_MHC_IP_R1	1	394.6102600097656	3	394.209619	1179.60703	-0.14586	-5.7501E-05	1.6098	0.0006346	1.4639	0.0005771	394.21013537994537	32.956	0.6068	32.956	32.684	33.291	0					20	8	4	0	0	0	0.71341	1	10712	10712		8.9762	0	1	5299400		+	11170	635;616;629;598;604	7924	7990	10907	10907					0.02440859519924743
ELARMLREY	9	Unmodified	_ELARMLREY_					0	0	0		ENSG00000186049|ENST00000305748|KRT73;CON__Q32MB2;ENSG00000139648|ENST00000267119|KRT71;CON__Q3SY84;ENSG00000170477|ENST00000551956|KRT4;ENSG00000170484|ENST00000305620|KRT74;CON__Q7RTS7;CON__Q9R0H5;CON__P19013;nc|ENSG00000170486|Q14CN4-3|KRT72;nc|ENSG00000170486|Q14CN4-2|KRT72;ENSG00000170486|ENST00000293745|KRT72;CON__Q14CN4-1	ENSG00000186049|ENST00000305748|KRT73;ENSG00000170484|ENST00000305620|KRT74;CON__Q9R0H5;CON__P19013;nc|ENSG00000170486|Q14CN4-3|KRT72	CON__Q9R0H5	MULTI-SECPEP	A375_MHC_IP_R2	2	394.6098937988281	3	394.209619	1179.60703	-0.18084	-7.1289E-05	1.2776	0.00050363	1.0967	0.00043234	394.2100992222457	32.214	0.35706	32.951	32.755	33.112	0.73691					11	6	2	0	0	0	0.67539	1	11466	11466		11.518	3.0736	1	6582100		+	11171	635;616;629;598;604	7924	7990	10908	10908					0.02440859519924743
ELARSDSTDAL	11	Unmodified	_ELARSDSTDAL_					0	0	0			REV__ENSG00000164880|ENST00000404767|INTS1	REV__ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	A375_MHC_IP_R1	1	393.137451171875	3	393.194692	1176.56225	-0.11552	-4.5422E-05	4.2527	0.0016721	4.1372	0.0016267	393.5308219280518	39.591	0.2534	39.591	39.491	39.744	0					5	4	2	0	0	0	0.72565	1	13530	13530		7.0371	0	1	783850	+		11172	20522	7925	7991	10909	10909					-0.018972928124185273
ELARYETTN	9	Unmodified	_ELARYETTN_					0	0	0		CON__Q9R4J5	CON__Q9R4J5	CON__Q9R4J5	MSMS	A375_MHC_IP_R1	1	548.6640014648438	2	548.767103	1095.51965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.587	1	43.587	43.087	44.087	0								0	0	0	0.15411	1	15161	15161		14.838	0	1			+	11173	636	7926	7992	10910	10910					-0.024286431500058825
ELASLEKGL	9	Unmodified	_ELASLEKGL_					0	0	0		ENST00000566016.5_1_16:46637844-46655271:-|nuORF;ENSG00000171241|ENST00000303383|SHCBP1	ENST00000566016.5_1_16:46637844-46655271:-|nuORF	ENST00000566016.5_1_16:46637844-46655271:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	480.67401123046875	2	480.274032	958.533512	-0.45657	-0.00021928	-0.24029	-0.0001154	-0.69685	-0.00033468	480.2737285556012	68.91	0.55768	69.645	69.323	69.88	0.73511					16	10	2	0	0	0	0.58271	1	25998	25998		14.838	0	1	1190900			11174	7587	7927	7993	10911	10911					0.05258634349092972
ELASLEKGL	9	Unmodified	_ELASLEKGL_					0	0	0		ENST00000566016.5_1_16:46637844-46655271:-|nuORF;ENSG00000171241|ENST00000303383|SHCBP1	ENST00000566016.5_1_16:46637844-46655271:-|nuORF	ENST00000566016.5_1_16:46637844-46655271:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	480.274032	958.533512	0.0089831	4.3144E-06	0.14825	7.1199E-05	0.15723	7.5513E-05	480.2740127278562	69.823	0.45441	69.823	69.529	69.983	0	0.088818	0.00016871	NaN	6.2058	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1150100			11175	7587	7927	7993							0.05258634349092972
ELATRRLQVPL	11	Unmodified	_ELATRRLQVPL_					0	0	0		ENST00000495703.5_1_1:45806075-45806195:+|nuORF	ENST00000495703.5_1_1:45806075-45806195:+|nuORF	ENST00000495703.5_1_1:45806075-45806195:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	433.33209228515625	3	432.597983	1294.77212	-0.46397	-0.00020071	-0.65787	-0.00028459	-1.1218	-0.00048531	432.59760490012843	136.64	1.028	136.64	136.46	137.49	0					64	19	4	0	0	0	0.73809	1	52609	52609		0.40827	0	1	34045000			11176	12712	7928	7994	10912	10912					0.13652414651210165
ELAVVHWPF	9	Unmodified	_ELAVVHWPF_					0	0	0			REV__ENST00000566637.5_1_16:88776385-88780917:+|nuORF	REV__ENST00000566637.5_1_16:88776385-88780917:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	548.678466796875	2	549.292559	1096.57057	-0.5628	-0.00030914	0.13792	7.5759E-05	-0.42488	-0.00023338	549.2907174875313	75.809	0.50307	75.809	75.514	76.017	0					27	9	4	0	0	0	0.59098	1	27589	27589		23.148	8.3102	1	2404200	+		11177	21269	7929	7995	10913	10913					0.026143506855078158
ELAWLEHAQ	9	Unmodified	_ELAWLEHAQ_					0	0	0			REV__nc|ENSG00000155719|Q7RTW8|OTOA	REV__nc|ENSG00000155719|Q7RTW8|OTOA	MULTI-SECPEP	A375_MHC_IP_R2	2	549.1141357421875	2	548.774731	1095.53491	-0.82542	-0.00045297	0.6722	0.00036888	-0.15322	-8.4086E-05	548.7762632478052	39.794	0.25415	40.568	40.422	40.676	0.77451					7	4	2	0	0	0	0.67483	1	14684	14684		3.2813	0	1	799990	+		11178	27304	7930	7996	10914	10914					-0.009037315621526432
ELCAAQKEEL	10	Unmodified	_ELCAAQKEEL_					0	0	0			REV__nc|ENSG00000137841|Q00722-3|PLCB2	REV__nc|ENSG00000137841|Q00722-3|PLCB2	MSMS	A375_MHC_IP_R2	2	567.2147216796875	2	567.278989	1132.54342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.04	1	101.8	101.3	102.3	0.76428								0	0	0	0.15207	1	38303	38303		13.906	3.0821	1		+		11179	19042	7931	7997	10915	10915					-0.01754545707831312
ELCCAMLSRH	10	Unmodified	_ELCCAMLSRH_					0	0	0			REV__nc|ENSG00000080839|P28749-2|RBL1	REV__nc|ENSG00000080839|P28749-2|RBL1	MULTI-MSMS	A375_MHC_IP_R1	1	581.6987915039062	2	581.761929	1161.5093	-0.13023	-7.576E-05	0.27199	0.00015823	0.14176	8.2473E-05	581.761833865846	62.293	1.3322	62.293	61.891	63.223	0					71	25	4	0	0	0	0.69306	1	22845	22845		13.906	3.8321	1	64174000	+		11180	16760	7932	7998	10916	10916					-0.0649898867209231
ELCDDANPVD	10	Unmodified	_ELCDDANPVD_					0	0	0		ENSG00000164794|ENST00000524391|KCNV1	ENSG00000164794|ENST00000524391|KCNV1	ENSG00000164794|ENST00000524391|KCNV1	MULTI-MSMS	A375_MHC_IP_R1	1	545.681884765625	2	545.721504	1089.42845	-0.47483	-0.00025913	0.26645	0.00014541	-0.20838	-0.00011372	545.7220055365691	70.789	1.0233	70.789	70.341	71.364	0					40	19	3	0	0	0	0.70496	1	25862	25862		10.074	3.3508	1	7555000			11181	6881	7933	7999	10917	10917					-0.11268274909639331
ELCDHLELK	9	Unmodified	_ELCDHLELK_					0	0	0		ENSG00000243156|ENST00000441493|MICAL3;nc|ENSG00000243156|Q7RTP6-2|MICAL3;nc|ENSG00000243156|Q7RTP6-4|MICAL3;nc|ENSG00000243156|Q7RTP6-3|MICAL3;nc|ENSG00000243156|Q7RTP6-5|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	MULTI-SECPEP	A375_MHC_IP_R1	1	366.6448974609375	3	367.186592	1098.53795	0.15691	5.7614E-05	-2.2105	-0.00081165	-2.0535	-0.00075404	367.18545547430523	33.114	0.86229	33.114	32.785	33.648	0					40	16	4	0	0	0	0.53748	1	10843	10843		22.658	15.049	1	23710000			11182	9806	7934	8000	10918	10918					-0.007382244996733789
ELCHEKEIL	9	Unmodified	_ELCHEKEIL_					0	0	0		ENSG00000081051|ENST00000395792|AFP	ENSG00000081051|ENST00000395792|AFP	ENSG00000081051|ENST00000395792|AFP	MULTI-SECPEP	A375_MHC_IP_R2	2	372.2578125	3	371.858475	1112.5536	0.43206	0.00016066	-1.3531	-0.00050316	-0.92104	-0.0003425	371.8580899040767	32.081	0.55886	32.818	32.654	33.213	0.73692					15	10	2	0	0	0	0.76187	1	11430	11430		0.86438	0	1	2092100			11183	1730	7935	8001	10919	10919					0.0018206201741577388
ELCIDFNKNL	10	Unmodified	_ELCIDFNKNL_					0	0	0		ENSG00000123213|ENST00000380985|NLN;ENST00000506539.5_1_5:65018131-65088776:+|nuORF;ENST00000506677.1_1_5:65076017-65081739:+|nuORF	ENSG00000123213|ENST00000380985|NLN	ENSG00000123213|ENST00000380985|NLN	MSMS	A375_MHC_IP_R1	1	604.7030639648438	2	604.802631	1207.59071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.37	1	51.37	50.87	51.87	0								0	0	0	0.14983	1	18234	18234		18.146	3.3081	1				11184	3835	7936	8002	10920	10920					-0.004782664368121914
ELCKSCIYGE	10	Unmodified	_ELCKSCIYGE_					0	0	0			REV__tr|U7SLZ6|U7SLZ6_FUSNUCompetenceproteinComFCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01997PE=4SV=1	REV__tr|U7SLZ6|U7SLZ6_FUSNUCompetenceproteinComFCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01997PE=4SV=1	MSMS	A375_MHC_IP_R2	2	381.9156494140625	3	382.171954	1143.49403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.085	1	39.859	39.359	40.359	0.77451								0	0	0	0.15435	1	14416	14416		3.5871	0	1		+		11185	28283	7937	8003	10921	10921					-0.0719757698830108
ELCPRDSDY	9	Unmodified	_ELCPRDSDY_					0	0	0		ENST00000296257.9_1_3:185348324-185348387:+|nuORF	ENST00000296257.9_1_3:185348324-185348387:+|nuORF	ENST00000296257.9_1_3:185348324-185348387:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	549.2451782226562	2	549.232039	1096.44952	-0.49702	-0.00027298	-0.67107	-0.00036857	-1.1681	-0.00064156	549.2314062521627	77.693	0.56151	77.693	77.436	77.998	0					16	10	2	0	0	0	0.68216	1	28270	28270		8.5933	1.304	1	2805800			11186	10504	7938	8004	10922	10922					-0.09484264810112109
ELCQLELVF	9	Unmodified	_ELCQLELVF_					0	0	0			REV__ENSG00000236609|ENST00000457543|ZNF853	REV__ENSG00000236609|ENST00000457543|ZNF853	MULTI-SECPEP	A375_MHC_IP_R1	1	547.627197265625	2	547.283543	1092.55253	-0.57835	-0.00031652	-0.21377	-0.00011699	-0.79212	-0.00043352	547.2835304656494	87.729	0.66389	87.729	87.134	87.798	0					20	12	2	0	0	0	0.71341	1	32038	32038		8.7454	0	1	1812000	+		11187	22760	7939	8005	10923	10923					0.009958476484825951
ELCSAIELLA	10	Unmodified	_ELCSAIELLA_					0	0	0			REV__ENSG00000131203|ENST00000518237|IDO1	REV__ENSG00000131203|ENST00000518237|IDO1	MULTI-SECPEP	A375_MHC_IP_R1	1	530.6768188476562	2	531.281	1060.54745	-0.59786	-0.00031763	-3.2626	-0.0017334	-3.8605	-0.002051	531.7797947327005	74.984	0.25323	74.984	74.857	75.11	0					5	4	2	0	0	0	0.87163	1	27343	27343		13.906	6.6168	1	487980	+		11188	18595	7940	8006	10924	10924					0.019595437858924925
ELCSEYRIY	9	Unmodified	_ELCSEYRIY_					0	0	0			REV__ENST00000557663.1_1_14:78205086-78227470:-|nuORF	REV__ENST00000557663.1_1_14:78205086-78227470:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	391.9667663574219	3	392.51823	1174.53286	-0.52207	-0.00020492	4.4653	0.0017527	3.9432	0.0015478	392.5195026581585	23.151	0.20435	23.781	23.623	23.828	0.63014					5	3	2	0	0	0	0.76187	1	7356	7356		4.5289	2.4429	1	704470	+		11189	26127	7941	8007	10925	10925					-0.04742528362248777
ELCVFLVAVSW	11	Unmodified	_ELCVFLVAVSW_					0	0	0		ENSG00000197233|ENST00000335302|OR1J2	ENSG00000197233|ENST00000335302|OR1J2	ENSG00000197233|ENST00000335302|OR1J2	MULTI-SECPEP	A375_MHC_IP_R2	2	422.3226318359375	3	422.558137	1264.65258	-0.15593	-6.589E-05	-0.15569	-6.5786E-05	-0.31162	-0.00013168	422.8922252045508	30.792	0.45314	31.511	31.317	31.77	0.71857					19	8	4	0	0	0	0.98968	1	10857	10857		13.519	1.8873	1	3213200			11190	9134	7942	8008	10926	10926					0.030840849822880045
ELDADLRKVV	10	Unmodified	_ELDADLRKVV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	A375_MHC_IP_R2	2	386.6021423339844	3	386.555672	1156.64519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.482	1	47.247	46.747	47.747	0.76519								0	0	0	0.15207	1	17409	17409		8.4443	2.5762	1				11191	6151;14694	7943	8009	10927	10927					0.0731306870620756
ELDCATHPL	9	Unmodified	_ELDCATHPL_					0	0	0			REV__ENST00000419842.1_1_3:17122732-17122885:+|nuORF	REV__ENST00000419842.1_1_3:17122732-17122885:+|nuORF	MSMS	A375_MHC_IP_R2	2	499.6866455078125	2	499.734217	997.453881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.292	1	49.049	48.549	49.549	0.75737								0	0	0	0.14359	1	18130	18130		28.487	1.6032	1		+		11192	24568	7944	8010	10928	10928					-0.04494755596556388
ELDCLIKGI	9	Unmodified	_ELDCLIKGI_					0	0	0		nc|ENSG00000125779|Q9BZ23-3|PANK2;ENSG00000125779|ENST00000610179|PANK2;nc|ENSG00000125779|Q9BZ23|PANK2;nc|ENSG00000125779|Q9BZ23-2|PANK2	nc|ENSG00000125779|Q9BZ23-3|PANK2	nc|ENSG00000125779|Q9BZ23-3|PANK2	MULTI-SECPEP	A375_MHC_IP_R1	1	502.6780090332031	2	502.27826	1002.54197	-0.53886	-0.00027066	-0.67506	-0.00033907	-1.2139	-0.00060972	502.278481355678	84.202	1.1136	84.202	83.483	84.596	0					37	21	3	0	0	0	0.53748	1	30862	30862		30.637	8.8899	1	4936700			11193	3988	7945	8011	10929	10929					0.040798649940711584
ELDDDQHWS	9	Unmodified	_ELDDDQHWS_					0	0	0		ENSG00000243156|ENST00000441493|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	MULTI-SECPEP	A375_MHC_IP_R1	1	572.2318115234375	2	572.730717	1143.44688	-0.1747	-0.00010005	0.89509	0.00051265	0.72039	0.00041259	573.2321051536281	104.93	0.20222	104.93	104.84	105.05	0					5	3	2	0	0	0	0.76187	1	38531	38531		7.2892	0	1	469280			11194	9806	7946	8012	10930	10930					-0.11910396943426349
ELDDTLKY	8	Unmodified	_ELDDTLKY_					0	0	0		ENST00000472253.1_1_5:133533465-133534901:-|nuORF;nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB	ENST00000472253.1_1_5:133533465-133534901:-|nuORF	ENST00000472253.1_1_5:133533465-133534901:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	498.1268615722656	2	498.747847	995.481142	-0.95502	-0.00047631	0.32543	0.00016231	-0.62959	-0.000314	498.74798354679865	52.396	0.85824	53.148	52.831	53.69	0.75225					41	16	4	0	0	0	0.1561	1	19730	19730		103.75	33.033	1	29746000			11195	2527	7947	8013	10931	10931					-0.016779487845269614
ELDEEFDSLY	10	Unmodified	_ELDEEFDSLY_					0	0	0		nc|ENSG00000106701|Q9BXM9-2|FSD1L;ENSG00000106701|ENST00000481272|FSD1L;ENST00000480279.1_1_9:108226543-108246709:+|nuORF;nc|ENSG00000106701|Q9BXM9-3|FSD1L	nc|ENSG00000106701|Q9BXM9-2|FSD1L	nc|ENSG00000106701|Q9BXM9-2|FSD1L	MSMS	A375_MHC_IP_R2	2	630.2554321289062	2	630.269341	1258.52413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.498	1	91.233	90.733	91.733	0.7345								0	0	0	0.15332	1	34434	34434		10.074	0	1				11196	2708	7948	8014	10932	10932					-0.09479223517746505
ELDEKEELY	9	Unmodified	_ELDEKEELY_					0	0	0			REV__ENSG00000198286|ENST00000396946|CARD11	REV__ENSG00000198286|ENST00000396946|CARD11	MSMS	A375_MHC_IP_R2	2	584.2228393554688	2	584.274426	1166.5343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.563	1	64.303	63.803	64.803	0.74022								0	0	0	0.1535	1	24101	24101		15.847	0.5987	1		+		11197	22359	7949	8015	10933	10933					-0.042306157924940635
ELDERGHTLY	10	Unmodified	_ELDERGHTLY_					0	0	0		nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-MSMS	A375_MHC_IP_R1	1	617.1981811523438	2	616.798934	1231.58332	-0.43859	-0.00027052	-0.27757	-0.0001712	-0.71615	-0.00044172	616.7986730593495	32.16	0.30875	32.16	31.973	32.282	0					11	5	3	0	0	0	0.021392	1	10394	10394		84.522	32.892	1	2330200			11198	6941	7950	8016	10934	10934					-0.02321282712887296
ELDERGHTLY	10	Unmodified	_ELDERGHTLY_					0	0	0		nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-SECPEP	A375_MHC_IP_R1	1	411.934814453125	3	411.535048	1231.58332	0.016402	6.7501E-06	-0.65228	-0.00026844	-0.63588	-0.00026169	411.5348800049074	32.154	0.46187	32.154	31.921	32.383	0					18	8	3	0	0	0	0.55923	1	10369	10369		39.213	12.125	1	8746300			11199	6941	7950	8016	10935	10935					-0.02321282712887296
ELDERGHTLY	10	Unmodified	_ELDERGHTLY_					0	0	0		nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-MSMS	A375_MHC_IP_R2	2	411.9348449707031	3	411.535048	1231.58332	-0.012328	-5.0736E-06	-0.31644	-0.00013023	-0.32877	-0.0001353	411.5350003070664	31.435	0.56261	32.153	31.872	32.434	0.71857					22	10	3	0	0	0	0.38709	1	11105	11105		30.431	8.632	1	6561500			11200	6941	7950	8016	10936	10936					-0.02321282712887296
ELDERGHTLY	10	Unmodified	_ELDERGHTLY_					0	0	0		nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-MATCH	A375_MHC_IP_R2	2		2	616.798934	1231.58332	-0.6714	-0.00041412	0.32129	0.00019817	-0.35011	-0.00021595	616.7991785404342	31.446	0.30632	32.165	32.026	32.332	0.71857	0.0021998	0.00024121	NaN	84.522	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2315700			11201	6941	7950	8016							-0.02321282712887296
ELDERGHTLY	10	Unmodified	_ELDERGHTLY_					0	0	0		nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	411.535048	1231.58332	-0.012328	-5.0736E-06	-0.31644	-0.00013023	-0.32877	-0.0001353	411.5350003070664	31.435	0.56261	32.153	31.872	32.434	0.71857	-6.8393E-05	0.0002071	NaN	30.431	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6561500			11202	6941	7950	8016							-0.02321282712887296
ELDERLENDPN	11	Unmodified	_ELDERLENDPN_					0	0	0		ENST00000467294.1_1_3:50385039-50385481:-|nuORF;ENST00000461020.5_1_3:50385039-50386041:-|nuORF;ENST00000487632.5_1_3:50385039-50386411:-|nuORF;ENSG00000114388|ENST00000232501|NPRL2	ENST00000467294.1_1_3:50385039-50385481:-|nuORF	ENST00000467294.1_1_3:50385039-50385481:-|nuORF	MSMS	A375_MHC_IP_R2	2	672.2039184570312	2	672.30732	1342.60009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.217	1	60.963	60.463	61.463	0.74577								0	0	0	0.15837	1	22794	22794		15.248	2.206	1				11203	12279	7951	8017	10937	10937					-0.05750826617600069
ELDEWHMQY	9	Unmodified	_ELDEWHMQY_					0	0	0			REV__ENSG00000157884|ENST00000288861|CIB4	REV__ENSG00000157884|ENST00000288861|CIB4	MULTI-SECPEP	A375_MHC_IP_R2	2	626.1611328125	2	625.760963	1249.50737	-0.8135	-0.00050906	1.6747	0.001048	0.86121	0.00053891	625.7625813268198	106.1	0.55998	106.86	106.53	107.09	0.75977					15	10	2	0	0	0	0.76827	1	40143	40143		10.824	5.0921	1	1897900	+		11204	20052	7952	8018	10938	10938					-0.10740002884676869
ELDFQKNIY	9	Unmodified	_ELDFQKNIY_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-MSMS	A375_MHC_IP_R2	2	585.6949462890625	2	585.295496	1168.57644	-0.38211	-0.00022365	0.26942	0.00015769	-0.11269	-6.5954E-05	585.2956103202541	68.563	0.50507	69.298	69.07	69.575	0.73511					15	9	2	0	0	0	0.0017027	1	25954	25954		147.06	84.486	1	6320200			11205	6442	7953	8019	10939	10939					-0.001105955934690428
ELDGDFNFY	9	Unmodified	_ELDGDFNFY_					0	0	0		tr|U7ST99|U7ST99_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00978PE=4SV=1	tr|U7ST99|U7ST99_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00978PE=4SV=1	tr|U7ST99|U7ST99_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00978PE=4SV=1	MSMS	A375_MHC_IP_R1	1	560.1815795898438	2	560.235104	1118.45566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.717	1	89.717	89.217	90.217	0								0	0	0	0.15486	1	32962	32962		8.5933	0	1				11206	29668	7954	8020	10940	10940					-0.09883423306928307
ELDHDQEWRSY	11	Unmodified	_ELDHDQEWRSY_					0	0	0			REV__ENSG00000171714|ENST00000324559|ANO5	REV__ENSG00000171714|ENST00000324559|ANO5	MULTI-SECPEP	A375_MHC_IP_R2	2	492.6429138183594	3	493.216267	1476.62697	-0.51399	-0.00025351	-0.15475	-7.6323E-05	-0.66874	-0.00032983	493.5505895861369	31.992	0.50744	32.729	32.453	32.96	0.73691					11	9	2	0	0	0	1.0002	1	11296	11296		1.3296	0	1	1814500	+		11207	21089	7955	8021	10941	10941					-0.09227718006445684
ELDHSKPLL	9	Unmodified	_ELDHSKPLL_					0	0	0		ENSG00000100601|ENST00000216489|ALKBH1	ENSG00000100601|ENST00000216489|ALKBH1	ENSG00000100601|ENST00000216489|ALKBH1	MULTI-MSMS	A375_MHC_IP_R2	2	351.60931396484375	3	351.197596	1050.57096	-0.30387	-0.00010672	-0.13966	-4.9048E-05	-0.44353	-0.00015577	351.53190364729403	45.283	0.45568	46.048	45.796	46.252	0.76519					19	8	3	0	0	0	0.69317	1	16869	16869		7.609	0.97858	1	1713800			11208	2200	7956	8022	10942	10942					0.04769725614710296
ELDIETSKY	9	Unmodified	_ELDIETSKY_					0	0	0		ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C	ENSG00000171988|ENST00000399262|JMJD1C	ENSG00000171988|ENST00000399262|JMJD1C	MULTI-MSMS	A375_MHC_IP_R1	1	549.67138671875	2	549.271687	1096.52882	-0.035244	-1.9359E-05	-0.55415	-0.00030438	-0.58939	-0.00032374	549.2712762295367	49.206	0.60715	49.206	48.933	49.54	0					23	11	3	0	0	0	0.012447	1	17378	17378		93.166	24.061	1	4838100			11209	7668	7957	8023	10943	10943					-0.015582945843334528
ELDIETSKY	9	Unmodified	_ELDIETSKY_					0	0	0		ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C	ENSG00000171988|ENST00000399262|JMJD1C	ENSG00000171988|ENST00000399262|JMJD1C	MULTI-MSMS	A375_MHC_IP_R2	2	549.67138671875	2	549.271687	1096.52882	-0.78812	-0.00043289	-0.20017	-0.00010995	-0.98829	-0.00054284	549.2716425102745	48.516	0.55557	49.274	48.929	49.485	0.75737					28	10	4	0	0	0	0.027818	1	18183	18183		76.825	20.648	1	5066800			11210	7668	7957	8023	10944	10944					-0.015582945843334528
ELDIWAQEKE	10	Unmodified	_ELDIWAQEKE_					0	0	0		ENST00000497526.1_1_2:113482708-113488660:+|nuORF;nc|ENSG00000144130|Q86YG4|NT5DC4;ENSG00000144130|ENST00000688554|NT5DC4	ENST00000497526.1_1_2:113482708-113488660:+|nuORF	ENST00000497526.1_1_2:113482708-113488660:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	421.6091003417969	3	420.875071	1259.60338	-0.047688	-2.0071E-05	-0.274	-0.00011532	-0.32169	-0.00013539	420.87489806079714	42.089	0.76479	42.862	42.606	43.37	0.7734					29	14	4	0	0	0	0.69726	1	15629	15629		13.519	0.66272	1	6750600			11211	5465	7958	8024	10945	10945					-0.016035317729574672
ELDKHFQKL	9	Unmodified	_ELDKHFQKL_					0	0	0			REV__ENSG00000101945|ENST00000376687|SUV39H1	REV__ENSG00000101945|ENST00000376687|SUV39H1	MULTI-SECPEP	A375_MHC_IP_R1	1	387.31707763671875	3	386.548629	1156.62406	-0.15129	-5.8479E-05	-1.5793	-0.00061049	-1.7306	-0.00066897	386.5480080165448	41.395	0.81512	41.395	41.013	41.828	0					16	7	3	0	0	0	0.775	1	14421	14421		10.8	0.64894	1	6228300	+		11212	17192	7959	8025	10946	10946					0.05201103397371298
ELDKLTTLY	9	Unmodified	_ELDKLTTLY_					0	0	0		nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-SECPEP	A375_MHC_IP_R1	1	548.1103515625	2	548.300247	1094.58594	-0.52435	-0.0002875	-0.47859	-0.00026241	-1.0029	-0.00054991	548.2999200452924	77.557	0.71107	77.557	77.184	77.895	0					28	13	3	0	0	0	0.11751	1	28314	28314		90.135	30.061	1	10666000			11213	5433	7960	8026	10947	10947					0.042431726920540314
ELDKLTTLY	9	Unmodified	_ELDKLTTLY_					0	0	0		nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6998291015625	2	548.300247	1094.58594	-0.78376	-0.00042974	-0.080506	-4.4141E-05	-0.86427	-0.00047388	548.3000992720428	76.786	0.70852	77.527	77.146	77.855	0.74052					22	13	2	0	0	0	0.054506	1	29139	29139		79.596	25.764	1	12217000			11214	5433	7960	8026	10948	10948					0.042431726920540314
ELDKWKKY	8	Unmodified	_ELDKWKKY_					0	0	0		tr|U7STZ9|U7STZ9_FUSNURibosomebiogenesisGTPaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01260PE=3SV=1	tr|U7STZ9|U7STZ9_FUSNURibosomebiogenesisGTPaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01260PE=3SV=1	tr|U7STZ9|U7STZ9_FUSNURibosomebiogenesisGTPaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01260PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1856689453125	2	555.303124	1108.5917	-0.66725	-0.00037053	-0.48565	-0.00026969	-1.1529	-0.00064021	555.3029941040975	84.628	0.65892	85.364	85.018	85.677	0.73601					23	12	3	0	0	0	0.96184	1	32070	32070		7.2892	7.2892	1	2868800			11215	29730	7961	8027	10949	10949					0.04174315994373501
ELDLHKRL	8	Unmodified	_ELDLHKRL_					0	0	0		ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	MULTI-SECPEP	A375_MHC_IP_R2	2	512.7005004882812	2	512.300916	1022.58728	-1.1799	-0.00060447	0.51981	0.0002663	-0.66011	-0.00033817	512.3010830266995	28.407	0.25393	29.086	28.96	29.214	0.67857					7	4	2	0	0	0	0.80467	1	9838	9838		41.84	9.5341	1	3907900			11216	1967	7962	8028	10950	10950					0.07688851571481337
ELDLHKRL	8	Unmodified	_ELDLHKRL_					0	0	0		ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	MULTI-MATCH	A375_MHC_IP_R1	1		2	512.300916	1022.58728	-0.92598	-0.00047438	0.070405	3.6069E-05	-0.85558	-0.00043831	512.300796198436	29.201	0.35664	29.201	28.996	29.353	0	0.057878	-0.0002569	NaN	41.84	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1869000			11217	1967	7962	8028							0.07688851571481337
ELDLQLQEY	9	Unmodified	_ELDLQLQEY_					0	0	0		nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28;nc|ENSG00000214944|Q8N1W1-5|ARHGEF28	nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	MULTI-SECPEP	A375_MHC_IP_R1	1	384.9365234375	3	384.1924	1149.55537	0.095801	3.6806E-05	2.3987	0.00092157	2.4945	0.00095838	384.1937364602778	24.198	1.1146	24.198	23.838	24.953	0					58	21	5	0	0	0	0.71071	1	6787	6787		14.405	0	1	36849000			11218	9632	7963	8029	10951	10951					-0.013426056930029517
ELDLTYGNRY	10	Unmodified	_ELDLTYGNRY_					0	0	0		ENST00000490651.1_1_X:153760401-153761015:-|nuORF;ENSG00000160211|ENST00000393562|G6PD;nc|ENSG00000160211|P11413-3|G6PD;nc|ENSG00000160211|P11413-2|G6PD	ENST00000490651.1_1_X:153760401-153761015:-|nuORF	ENST00000490651.1_1_X:153760401-153761015:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	622.7012329101562	2	622.30131	1242.58807	-0.35684	-0.00022206	0.68831	0.00042834	0.33147	0.00020627	622.301352441806	62.687	0.46111	62.687	62.505	62.966	0					17	8	3	0	0	0	0.13881	1	22660	22660		55.503	21.101	1	2106100			11219	6405	7964	8030	10952	10952					-0.023523985701331185
ELDLTYGNRY	10	Unmodified	_ELDLTYGNRY_					0	0	0		ENST00000490651.1_1_X:153760401-153761015:-|nuORF;ENSG00000160211|ENST00000393562|G6PD;nc|ENSG00000160211|P11413-3|G6PD;nc|ENSG00000160211|P11413-2|G6PD	ENST00000490651.1_1_X:153760401-153761015:-|nuORF	ENST00000490651.1_1_X:153760401-153761015:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	622.70068359375	2	622.30131	1242.58807	-0.94274	-0.00058667	0.092593	5.7621E-05	-0.85015	-0.00052905	622.3012276299122	62.129	0.40585	62.872	62.622	63.028	0.74263					12	7	2	0	0	0	0.0097732	1	23556	23556		92.653	50.814	1	2103500			11220	6405	7964	8030	10953	10953					-0.023523985701331185
ELDMMKYAMEV	11	Unmodified	_ELDMMKYAMEV_					0	0	0			REV__nc|ENSG00000170242|Q96K76-2|USP47	REV__nc|ENSG00000170242|Q96K76-2|USP47	MULTI-MSMS	A375_MHC_IP_R2	2	680.2011108398438	2	680.303292	1358.59203	-0.86883	-0.00059106	-1.0658	-0.00072509	-1.9347	-0.0013162	680.3027395606637	38.921	0.86863	39.695	39.351	40.219	0.77451					22	16	2	0	0	0	0.69231	1	14299	14299		16.149	3.9084	1	1931800	+		11221	20976	7965	8031	10954	10954					-0.07292136454611864
ELDNGSCDVQQ	11	Unmodified	_ELDNGSCDVQQ_					0	0	0			REV__nc|ENSG00000110713|P52948-6|NUP98	REV__nc|ENSG00000110713|P52948-6|NUP98	MSMS	A375_MHC_IP_R2	2	604.2269897460938	2	604.248417	1206.48228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.59	1	61.335	60.835	61.835	0.74503								0	0	0	0.16265	1	22944	22944		4.897	0.141	1		+		11222	17637	7966	8032	10955	10955					-0.11270102477919863
ELDNINDFF	9	Unmodified	_ELDNINDFF_					0	0	0			REV__tr|U7T5P9|U7T5P9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00132PE=4SV=1	REV__tr|U7T5P9|U7T5P9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00132PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	563.1661987304688	2	563.756204	1125.49785	-0.7316	-0.00041245	0.15208	8.5738E-05	-0.57952	-0.00032671	563.7563052838681	62.039	0.80983	62.782	62.421	63.23	0.74263					33	15	3	0	0	0	0.53748	1	23549	23549		24.021	3.5669	1	4807100	+		11223	28832	7967	8033	10956	10956					-0.05987447898587561
ELDNINDFF	9	Unmodified	_ELDNINDFF_					0	0	0			REV__tr|U7T5P9|U7T5P9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00132PE=4SV=1	REV__tr|U7T5P9|U7T5P9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00132PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	563.756204	1125.49785	-0.31117	-0.00017543	0.11466	6.4641E-05	-0.19651	-0.00011079	563.7562670214297	62.583	0.87225	62.583	62.249	63.121	0	-0.09963	-1.7344E-05	NaN	24.021	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5423400	+		11224	28832	7967	8033							-0.05987447898587561
ELDNTYIVY	9	Unmodified	_ELDNTYIVY_					0	0	0		nc|ENSG00000196562|Q8IWU5-2|SULF2;ENSG00000196562|ENST00000688720|SULF2	nc|ENSG00000196562|Q8IWU5-2|SULF2	nc|ENSG00000196562|Q8IWU5-2|SULF2	MULTI-SECPEP	A375_MHC_IP_R1	1	565.673828125	2	565.274229	1128.53391	-0.42472	-0.00024008	0.20882	0.00011804	-0.2159	-0.00012204	565.2742425427119	95.926	0.50681	95.926	95.716	96.223	0					17	9	2	0	0	0	0.20451	1	35246	35246		46.021	15.384	1	3316100			11225	9058	7968	8034	10957	10957					-0.025219907217206128
ELDNTYIVY	9	Unmodified	_ELDNTYIVY_					0	0	0		nc|ENSG00000196562|Q8IWU5-2|SULF2;ENSG00000196562|ENST00000688720|SULF2	nc|ENSG00000196562|Q8IWU5-2|SULF2	nc|ENSG00000196562|Q8IWU5-2|SULF2	MULTI-MSMS	A375_MHC_IP_R2	2	565.6740112304688	2	565.274229	1128.53391	-0.23503	-0.00013285	0.22099	0.00012492	-0.014032	-7.9321E-06	565.2742602088608	95.284	0.66242	96.034	95.583	96.246	0.75044					19	12	2	0	0	0	0.091096	1	36216	36216		52.268	19.963	1	2548300			11226	9058	7968	8034	10958	10958					-0.025219907217206128
ELDPDNETY	9	Unmodified	_ELDPDNETY_					0	0	0		ENSG00000104969|ENST00000221566|SGTA	ENSG00000104969|ENST00000221566|SGTA	ENSG00000104969|ENST00000221566|SGTA	MULTI-MSMS	A375_MHC_IP_R2	2	548.6346435546875	2	548.227476	1094.4404	-0.58333	-0.0003198	-0.59624	-0.00032688	-1.1796	-0.00064667	548.2272512605676	46.979	0.51028	47.741	47.613	48.123	0.76128					16	9	3	0	0	0	0.11629	1	17586	17586		47.749	9.5731	1	5233700			11227	2559	7969	8035	10959	10959					-0.1030433489479492
ELDPLTGEWHY	11	Unmodified	_ELDPLTGEWHY_					0	0	0		nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8	nc|ENSG00000091039|Q9BZF1-3|OSBPL8	nc|ENSG00000091039|Q9BZF1-3|OSBPL8	MULTI-MSMS	A375_MHC_IP_R1	1	680.7142944335938	2	680.314417	1358.61428	-0.5712	-0.0003886	-0.076562	-5.2086E-05	-0.64776	-0.00044068	680.3141756350207	101.87	0.70811	101.87	101.5	102.2	0					36	13	4	0	0	0	3.4191E-08	2	37405	37374;37405		160.52	134.25	1	6998600			11228	1968	7970	8036	10960;10961	10961					-0.050681293986599485
ELDPLTGEWHY	11	Unmodified	_ELDPLTGEWHY_					0	0	0		nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8	nc|ENSG00000091039|Q9BZF1-3|OSBPL8	nc|ENSG00000091039|Q9BZF1-3|OSBPL8	MULTI-SECPEP	A375_MHC_IP_R2	2	680.7138671875	2	680.314417	1358.61428	-0.52517	-0.00035728	0.22905	0.00015583	-0.29612	-0.00020145	680.3143267326867	101.21	0.81534	101.97	101.6	102.41	0.76428					35	15	4	0	0	0	0.00083605	1	38341	38341		126.57	100.3	1	7020300			11229	1968	7970	8036	10962	10962					-0.050681293986599485
ELDPMAMTQKY	11	2 Oxidation (M)	_ELDPM(Oxidation (M))AM(Oxidation (M))TQKY_		ELDPM(1)AM(1)TQKY		ELDPM(190)AM(190)TQKY	0	0	2		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	A375_MHC_IP_R1	1	680.2014770507812	2	679.801971	1357.58939	-0.75354	-0.00051226	-0.36905	-0.00025088	-1.1226	-0.00076314	679.8019648332456	33.065	0.45473	33.065	32.836	33.291	0					26	8	4	0	0	0	8.3399E-15	1	10741	10741		187.14	147.19	1	16674000			11230	1871	7971	8037	10963	10963		68;69			-0.07510268587884639
ELDPMAMTQKY	11	2 Oxidation (M)	_ELDPM(Oxidation (M))AM(Oxidation (M))TQKY_		ELDPM(1)AM(1)TQKY		ELDPM(210)AM(210)TQKY	0	0	2		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	A375_MHC_IP_R1	1	680.2015991210938	2	679.801971	1357.58939	-0.59823	-0.00040668	-0.45053	-0.00030627	-1.0488	-0.00071295	679.8019172932549	33.522	0.50732	33.522	33.241	33.748	0					38	9	5	0	0	0	5.100199999999999E-21	1	10996	10996		214.05	174.1	1	36707000			11231	1871	7971	8037	10964	10964		68;69			-0.07510268587884639
ELDPMAMTQKY	11	2 Oxidation (M)	_ELDPM(Oxidation (M))AM(Oxidation (M))TQKY_		ELDPM(1)AM(1)TQKY		ELDPM(63)AM(63)TQKY	0	0	2		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	A375_MHC_IP_R1	1	680.2015991210938	2	679.801971	1357.58939	-0.62366	-0.00042397	-0.019634	-1.3347E-05	-0.6433	-0.00043731	679.8021453527639	33.976	0.55499	33.976	33.748	34.303	0					27	10	4	0	0	0	0.14152	1	11245	11245		62.869	42.454	1	17962000			11232	1871	7971	8037	10965	10965		68;69			-0.07510268587884639
ELDPMAMTQKY	11	2 Oxidation (M)	_ELDPM(Oxidation (M))AM(Oxidation (M))TQKY_		ELDPM(1)AM(1)TQKY		ELDPM(120)AM(120)TQKY	0	0	2		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	A375_MHC_IP_R1	1	680.20166015625	2	679.801971	1357.58939	-0.66651	-0.0004531	-0.015725	-1.069E-05	-0.68224	-0.00046379	679.8021327645765	37.513	4.425	37.513	36.184	40.609	0					183	86	3	0	0	0	0.00035842	4	12668	12423;12668;12917;13217		115.06	82.273	1	5550100			11233	1871	7971	8037	10966;10967;10968;10969	10967		68;69			-0.07510268587884639
ELDPMAMTQKY	11	2 Oxidation (M)	_ELDPM(Oxidation (M))AM(Oxidation (M))TQKY_		ELDPM(1)AM(1)TQKY		ELDPM(65)AM(65)TQKY	0	0	2		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	A375_MHC_IP_R1	1	680.2014770507812	2	679.801971	1357.58939	-0.62813	-0.00042701	-0.012248	-8.326E-06	-0.64038	-0.00043533	679.8019849228766	52.329	0.7125	52.329	51.879	52.592	0					20	13	2	0	0	0	0.1293	1	18633	18633		64.927	44.512	1	2484400			11234	1871	7971	8037	10970	10970		68;69			-0.07510268587884639
ELDPMAMTQKY	11	2 Oxidation (M)	_ELDPM(Oxidation (M))AM(Oxidation (M))TQKY_		ELDPM(1)AM(1)TQKY		ELDPM(95)AM(95)TQKY	0	0	2		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	A375_MHC_IP_R1	1	680.2013549804688	2	679.801971	1357.58939	-0.75156	-0.00051091	0.27277	0.00018543	-0.47879	-0.00032548	679.802162380279	53.259	0.81104	53.259	52.694	53.505	0					27	15	2	0	0	0	0.0066141	1	18994	18994		94.909	68.641	1	2744300			11235	1871	7971	8037	10971	10971		68;69			-0.07510268587884639
ELDPMAMTQKY	11	2 Oxidation (M)	_ELDPM(Oxidation (M))AM(Oxidation (M))TQKY_		ELDPM(1)AM(1)TQKY		ELDPM(63)AM(63)TQKY	0	0	2		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	A375_MHC_IP_R1	1	680.2020874023438	2	679.801971	1357.58939	-0.44037	-0.00029937	0.04332	2.9449E-05	-0.39706	-0.00026992	679.8018134963835	53.916	0.50708	53.916	53.656	54.163	0					16	9	2	0	0	0	0.14152	1	19265	19265		62.869	47.62	1	3716700			11236	1871	7971	8037	10972	10972		68;69			-0.07510268587884639
ELDPMAMTQKY	11	2 Oxidation (M)	_ELDPM(Oxidation (M))AM(Oxidation (M))TQKY_		ELDPM(1)AM(1)TQKY		ELDPM(65)AM(65)TQKY	0	0	2		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-SECPEP	A375_MHC_IP_R1	1	680.2014770507812	2	679.801971	1357.58939	-0.62712	-0.00042632	-0.3458	-0.00023508	-0.97293	-0.0006614	679.8019092501601	74.966	0.45724	74.966	74.754	75.211	0					17	8	3	0	0	0	0.18699	1	27319	27319		64.927	49.678	1	2536700			11237	1871	7971	8037	10973	10973		68;69			-0.07510268587884639
ELDPMAMTQKY	11	2 Oxidation (M)	_ELDPM(Oxidation (M))AM(Oxidation (M))TQKY_		ELDPM(1)AM(1)TQKY		ELDPM(210)AM(210)TQKY	0	0	2		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	A375_MHC_IP_R2	2	680.2011108398438	2	679.801971	1357.58939	-0.67725	-0.0004604	-0.63904	-0.00043442	-1.3163	-0.00089481	679.8017558165909	32.462	0.45824	33.199	32.909	33.367	0.73692					25	8	4	0	0	0	6.704199999999999E-21	1	11536	11536		210.93	170.98	1	17638000			11238	1871	7971	8037	10974	10974		68;69			-0.07510268587884639
ELDPMAMTQKY	11	2 Oxidation (M)	_ELDPM(Oxidation (M))AM(Oxidation (M))TQKY_		ELDPM(1)AM(1)TQKY		ELDPM(210)AM(210)TQKY	0	0	2		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	A375_MHC_IP_R2	2	680.2015380859375	2	679.801971	1357.58939	-0.71587	-0.00048665	-0.41386	-0.00028134	-1.1297	-0.00076799	679.8019103842423	32.901	0.5591	33.638	33.317	33.876	0.73692					36	10	4	0	0	0	5.100199999999999E-21	1	11773	11773		214.05	174.1	1	31536000			11239	1871	7971	8037	10975	10975		68;69			-0.07510268587884639
ELDPMAMTQKY	11	2 Oxidation (M)	_ELDPM(Oxidation (M))AM(Oxidation (M))TQKY_		ELDPM(1)AM(1)TQKY		ELDPM(95)AM(95)TQKY	0	0	2		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	A375_MHC_IP_R2	2	680.2015380859375	2	679.801971	1357.58939	-0.99231	-0.00067457	-0.27427	-0.00018645	-1.2666	-0.00086102	679.802103609268	33.389	0.5587	34.142	33.891	34.45	0.75225					31	10	4	0	0	0	0.0066141	1	12019	12019		94.909	68.641	1	13540000			11240	1871	7971	8037	10976	10976		68;69			-0.07510268587884639
ELDPMAMTQKY	11	2 Oxidation (M)	_ELDPM(Oxidation (M))AM(Oxidation (M))TQKY_		ELDPM(1)AM(1)TQKY		ELDPM(100)AM(100)TQKY	0	0	2		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	A375_MHC_IP_R2	2	680.201171875	2	679.801971	1357.58939	-1.0043	-0.00068272	0.15645	0.00010636	-0.84784	-0.00057637	679.802090853896	37.781	2.8042	38.555	36.752	39.556	0.77451					101	54	2	0	0	0	0.0012117	3	13910	13413;13910;13986		101.54	68.758	1	5193800			11241	1871	7971	8037	10977;10978;10979	10978		68;69			-0.07510268587884639
ELDPMAMTQKY	11	2 Oxidation (M)	_ELDPM(Oxidation (M))AM(Oxidation (M))TQKY_		ELDPM(1)AM(1)TQKY		ELDPM(63)AM(63)TQKY	0	0	2		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	A375_MHC_IP_R2	2	680.2020263671875	2	679.801971	1357.58939	-1.2329	-0.00083811	0.53878	0.00036626	-0.69409	-0.00047185	679.8021939178861	53.291	0.40752	54.042	53.842	54.249	0.75105					13	7	2	0	0	0	0.14152	1	20150	20150		62.869	42.454	1	3783100			11242	1871	7971	8037	10980	10980		68;69			-0.07510268587884639
ELDPMAMTQKY	11	Oxidation (M)	_ELDPMAM(Oxidation (M))TQKY_		ELDPMAM(1)TQKY		ELDPM(-33)AM(33)TQKY	0	0	1		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	A375_MHC_IP_R1	1	672.2047119140625	2	671.804513	1341.59447	-0.62814	-0.00042198	-0.19812	-0.0001331	-0.82625	-0.00055508	671.8045778938708	52.337	0.55785	52.337	52.034	52.592	0					31	10	4	0	0	0	0.00072293	1	18569	18569		107.56	67.614	2	18203000			11243	1871	7971	8038	10981	10981		68;69			-0.06265964725275808
ELDPMAMTQKY	11	Oxidation (M)	_ELDPMAM(Oxidation (M))TQKY_		ELDPMAM(1)TQKY		ELDPM(-56)AM(56)TQKY	0	0	1		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	A375_MHC_IP_R1	1	672.2037963867188	2	671.804513	1341.59447	-0.74787	-0.00050242	-0.12992	-8.728E-05	-0.87779	-0.0005897	671.8046794322245	53.24	1.0138	53.24	52.592	53.605	0					63	19	4	0	0	0	5.0885E-09	2	18811	18811;19048		166.77	126.82	2	24880000			11244	1871	7971	8038	10982;10983	10982		68;69			-0.06265964725275808
ELDPMAMTQKY	11	Oxidation (M)	_ELDPM(Oxidation (M))AMTQKY_		ELDPM(1)AMTQKY		ELDPM(56)AM(-56)TQKY	0	0	1		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	A375_MHC_IP_R1	1	672.2045288085938	2	671.804513	1341.59447	-0.4451	-0.00029902	-0.24914	-0.00016737	-0.69424	-0.00046639	671.8045681892656	53.91	0.7083	53.91	53.555	54.263	0					42	13	4	0	0	0	6.6273E-13	1	19261	19261		177.58	133.8	2	25162000			11245	1871	7971	8038	10984	10984		68;69			-0.06265964725275808
ELDPMAMTQKY	11	Oxidation (M)	_ELDPM(Oxidation (M))AMTQKY_		ELDPM(0.5)AM(0.5)TQKY		ELDPM(0)AM(0)TQKY	0	0	1		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	A375_MHC_IP_R1	1	672.203857421875	2	671.804513	1341.59447	-0.63575	-0.0004271	-0.023852	-1.6024E-05	-0.65961	-0.00044313	671.804593008541	57.833	4.6781	57.833	56.447	61.126	0					232	91	3	0	0	0	0.00097291	5	20807	20365;20589;20807;21239;21698		104.48	64.535	2	8422700			11246	1871	7971	8038	10985;10986;10987;10988;10989	10987		68;69			-0.06265964725275808
ELDPMAMTQKY	11	Oxidation (M)	_ELDPM(Oxidation (M))AMTQKY_		ELDPM(0.5)AM(0.5)TQKY		ELDPM(0)AM(0)TQKY	0	0	1		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-SECPEP	A375_MHC_IP_R1	1	672.2049560546875	2	671.804513	1341.59447	-0.62231	-0.00041807	-0.53883	-0.00036199	-1.1611	-0.00078006	671.8044286650464	74.977	0.91103	74.977	74.553	75.464	0					40	17	4	0	0	0	0.16642	1	27266	27266		67.081	40.813	2	12617000			11247	1871	7971	8038	10990	10990		68;69			-0.06265964725275808
ELDPMAMTQKY	11	Oxidation (M)	_ELDPMAM(Oxidation (M))TQKY_		ELDPMAM(1)TQKY		ELDPM(-39)AM(39)TQKY	0	0	1		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	A375_MHC_IP_R2	2	672.2037963867188	2	671.804513	1341.59447	-1.0057	-0.00067563	-0.36337	-0.00024411	-1.3691	-0.00091974	671.8045608365211	51.719	0.55986	52.472	52.169	52.729	0.75225					31	10	4	0	0	0	0.00097291	1	19437	19437		104.48	64.535	2	18664000			11248	1871	7971	8038	10991	10991		68;69			-0.06265964725275808
ELDPMAMTQKY	11	Oxidation (M)	_ELDPM(Oxidation (M))AMTQKY_		ELDPM(1)AMTQKY		ELDPM(67)AM(-67)TQKY	0	0	1		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	A375_MHC_IP_R2	2	672.2041625976562	2	671.804513	1341.59447	-1.2047	-0.0008093	-0.077459	-5.2037E-05	-1.2821	-0.00086134	671.8047102936746	52.675	0.90985	53.426	52.779	53.689	0.75188					43	17	4	0	0	0	1.1292E-12	1	19918	19918		174.48	130.71	2	26041000			11249	1871	7971	8038	10992	10992		68;69			-0.06265964725275808
ELDPMAMTQKY	11	Oxidation (M)	_ELDPM(Oxidation (M))AMTQKY_		ELDPM(1)AMTQKY		ELDPM(83)AM(-83)TQKY	0	0	1		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	A375_MHC_IP_R2	2	672.2042846679688	2	671.804513	1341.59447	-1.3332	-0.00089568	0.16146	0.00010847	-1.1718	-0.00078721	671.804796218647	53.287	0.66484	54.038	53.688	54.353	0.75105					39	12	4	0	0	0	5.3431E-17	1	20140	20140		200.32	160.37	2	30839000			11250	1871	7971	8038	10993	10993		68;69			-0.06265964725275808
ELDPMAMTQKY	11	Oxidation (M)	_ELDPM(Oxidation (M))AMTQKY_		ELDPM(0.828)AM(0.172)TQKY		ELDPM(6.8)AM(-6.8)TQKY	0	0	1		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	A375_MHC_IP_R2	2	672.203857421875	2	671.804513	1341.59447	-1.0804	-0.00072585	-0.27439	-0.00018434	-1.3548	-0.00091018	671.8044717357434	57.647	4.4715	58.396	56.896	61.368	0.74894					183	87	3	0	0	0	0.00041885	5	21904	21458;21685;21822;21904;22124		111.31	71.359	2	7421300			11251	1871	7971	8038	10994;10995;10996;10997;10998	10997		68;69			-0.06265964725275808
ELDPMAMTQKY	11	Oxidation (M)	_ELDPM(Oxidation (M))AMTQKY_		ELDPM(0.5)AM(0.5)TQKY		ELDPM(0)AM(0)TQKY	0	0	1		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-SECPEP	A375_MHC_IP_R2	2	672.2032470703125	2	671.804513	1341.59447	-0.76537	-0.00051418	-0.22948	-0.00015416	-0.99485	-0.00066834	671.8046062845319	74.325	0.76093	75.063	74.706	75.467	0.73751					36	14	4	0	0	0	0.027651	1	28167	28167		94.909	54.959	2	12416000			11252	1871	7971	8038	10999	10999		68;69			-0.06265964725275808
ELDPMAMTQKY	11	Unmodified	_ELDPMAMTQKY_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	A375_MHC_IP_R1	1	664.206787109375	2	663.807056	1325.59956	-0.54083	-0.000359	-0.58583	-0.00038888	-1.1267	-0.00074788	663.806978920547	74.983	0.86049	74.983	74.653	75.514	0					61	16	5	0	0	0	3.8807999999999996E-21	2	27261	27234;27261		216.42	156.34	1	70464000			11253	1871	7971	8039	11000;11001	11001					-0.05021660862666977
ELDPMAMTQKY	11	Unmodified	_ELDPMAMTQKY_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	A375_MHC_IP_R2	2	664.2067260742188	2	663.807056	1325.59956	-0.87173	-0.00057866	-0.21757	-0.00014442	-1.0893	-0.00072309	663.8071985875963	74.3	0.9146	75.037	74.706	75.621	0.73751					62	17	5	0	0	0	3.8807999999999996E-21	2	28143	28143;28189		216.42	156.34	1	71251000			11254	1871	7971	8039	11002;11003	11002					-0.05021660862666977
ELDPNNAV	8	Unmodified	_ELDPNNAV_					0	0	0		ENSG00000197860|ENST00000381007|SGTB	ENSG00000197860|ENST00000381007|SGTB	ENSG00000197860|ENST00000381007|SGTB	MSMS	A375_MHC_IP_R1	1	436.1520080566406	2	436.211432	870.408311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.5	1	102.5	102	103	0								0	0	0	0.16876	1	37669	37669		10.183	0	1				11255	9202	7972	8040	11004	11004					-0.03207657787288554
ELDPNNAVYY	10	Unmodified	_ELDPNNAVYY_					0	0	0		ENSG00000197860|ENST00000381007|SGTB	ENSG00000197860|ENST00000381007|SGTB	ENSG00000197860|ENST00000381007|SGTB	MULTI-MSMS	A375_MHC_IP_R1	1	599.6744384765625	2	599.274761	1196.53497	-0.38635	-0.00023153	0.077173	4.6248E-05	-0.30917	-0.00018528	599.2747752671999	75.418	0.75514	75.418	75.11	75.865	0					27	14	2	0	0	0	0.028981	1	27434	27434		81.89	28.057	1	11095000			11256	9202	7973	8041	11005	11005					-0.05543776352783425
ELDPNNAVYY	10	Unmodified	_ELDPNNAVYY_					0	0	0		ENSG00000197860|ENST00000381007|SGTB	ENSG00000197860|ENST00000381007|SGTB	ENSG00000197860|ENST00000381007|SGTB	MULTI-MSMS	A375_MHC_IP_R2	2	599.674560546875	2	599.274761	1196.53497	-0.58681	-0.00035166	0.4695	0.00028136	-0.11732	-7.0305E-05	599.2750942051722	74.87	1.3222	75.607	75.009	76.331	0.73751					55	25	3	0	0	0	0.015059	1	28359	28359		88.954	54.022	1	10690000			11257	9202	7973	8041	11006	11006					-0.05543776352783425
ELDPQSSNLY	10	Unmodified	_ELDPQSSNLY_					0	0	0		nc|ENSG00000153029|Q95460-2|MR1;ENSG00000153029|ENST00000367580|MR1	nc|ENSG00000153029|Q95460-2|MR1	nc|ENSG00000153029|Q95460-2|MR1	MULTI-MSMS	A375_MHC_IP_R1	1	583.6717529296875	2	583.272218	1164.52988	-0.36832	-0.00021483	-0.34389	-0.00020058	-0.71221	-0.00041541	583.2719997914613	65.641	0.66274	65.641	65.309	65.972	0					20	12	2	0	0	0	0.0097732	1	23776	23776		92.653	52.696	1	3142100			11258	5998	7974	8042	11007	11007					-0.04580080215419002
ELDPQSSNLY	10	Unmodified	_ELDPQSSNLY_					0	0	0		nc|ENSG00000153029|Q95460-2|MR1;ENSG00000153029|ENST00000367580|MR1	nc|ENSG00000153029|Q95460-2|MR1	nc|ENSG00000153029|Q95460-2|MR1	MULTI-MSMS	A375_MHC_IP_R2	2	583.6710815429688	2	583.272218	1164.52988	-0.4793	-0.00027956	-0.37562	-0.00021909	-0.85492	-0.00049865	583.271948114652	65.085	0.45651	65.824	65.613	66.069	0.73811					18	8	3	0	0	0	0.013372	1	24672	24672		90.135	57.829	1	3070600			11259	5998	7974	8042	11008	11008					-0.04580080215419002
ELDPRYEDY	9	Unmodified	_ELDPRYEDY_					0	0	0		ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172	ENSG00000138002|ENST00000260570|IFT172	ENSG00000138002|ENST00000260570|IFT172	MSMS	A375_MHC_IP_R1	1	600.21435546875	2	600.264393	1198.51423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.655	1	98.655	98.155	99.155	0								0	0	0	0.15486	1	36245	36245		7.9102	0.62092	1				11260	4942	7975	8043	11009	11009					-0.07708366732458671
ELDPSNTKALY	11	Unmodified	_ELDPSNTKALY_					0	0	0		ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	MULTI-SECPEP	A375_MHC_IP_R1	1	626.2167358398438	2	625.816793	1249.61903	-0.53941	-0.00033757	-2.9726	-0.0018603	-3.512	-0.0021979	625.8147455431957	50.837	0.60918	50.837	50.459	51.068	0					33	11	4	0	0	0	0.16819	1	18068	18068		65.474	45.059	1	8242100			11261	7611	7976	8044	11010	11010					0.004207547441183124
ELDPSNTKALY	11	Unmodified	_ELDPSNTKALY_					0	0	0		ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	MULTI-SECPEP	A375_MHC_IP_R2	2	626.2161865234375	2	625.816793	1249.61903	-1.0116	-0.0006331	-2.7	-0.0016897	-3.7116	-0.0023228	625.814877797065	50.176	0.7123	50.93	50.497	51.209	0.75406					39	13	4	0	0	0	0.25959	1	18891	18891		61.09	38.354	1	9157600			11262	7611	7976	8044	11011	11011					0.004207547441183124
ELDPTKGNCY	10	Carbamidomethyl (C)	_ELDPTKGNC(Carbamidomethyl (C))Y_	ELDPTKGNC(1)Y		ELDPTKGNC(96)Y		0	1	0		ENSG00000179104|ENST00000321196|TMTC2	ENSG00000179104|ENST00000321196|TMTC2	ENSG00000179104|ENST00000321196|TMTC2	MULTI-MSMS	A375_MHC_IP_R1	1	598.6951293945312	2	598.766245	1195.51794	-0.37575	-0.00022499	0.44665	0.00026744	0.070891	4.2447E-05	598.7665292380736	33.49	0.35657	33.49	33.291	33.648	0					11	6	2	0	0	0	0.0044674	2	10922	10922;10960		103.42	49.587	1	2880600			11263	8204	7977	8045	11012;11013	11012	41				-0.07200020230266091
ELDPTKGNCY	10	Carbamidomethyl (C)	_ELDPTKGNC(Carbamidomethyl (C))Y_	ELDPTKGNC(1)Y		ELDPTKGNC(100)Y		0	1	0		ENSG00000179104|ENST00000321196|TMTC2	ENSG00000179104|ENST00000321196|TMTC2	ENSG00000179104|ENST00000321196|TMTC2	MULTI-MSMS	A375_MHC_IP_R2	2	599.16650390625	2	598.766245	1195.51794	-0.62269	-0.00037284	-0.60672	-0.00036329	-1.2294	-0.00073613	598.7653046449786	32.844	0.66191	33.581	33.417	34.079	0.73691					25	12	4	0	0	0	0.0062475	1	11761	11761		103.42	45.948	1	3487200			11264	8204	7977	8045	11014	11014	41				-0.07200020230266091
ELDPTNMTY	9	Oxidation (M)	_ELDPTNM(Oxidation (M))TY_		ELDPTNM(1)TY		ELDPTNM(120)TY	0	0	1		nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1	nc|ENSG00000168439|P31948-3|STIP1	nc|ENSG00000168439|P31948-3|STIP1	MULTI-MSMS	A375_MHC_IP_R1	1	550.6342163085938	2	550.234247	1098.45394	-0.57829	-0.00031819	-0.14771	-8.1277E-05	-0.726	-0.00039947	550.2343227461726	50.414	0.61102	50.414	50.153	50.764	0					34	11	5	0	0	0	0.0098926	1	17854	17854		118.07	52.833	1	7081600			11265	7302	7978	8046	11015	11015		372			-0.09134800387209907
ELDPTNMTY	9	Oxidation (M)	_ELDPTNM(Oxidation (M))TY_		ELDPTNM(1)TY		ELDPTNM(120)TY	0	0	1		nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1	nc|ENSG00000168439|P31948-3|STIP1	nc|ENSG00000168439|P31948-3|STIP1	MULTI-MSMS	A375_MHC_IP_R1	1	550.6338500976562	2	550.234247	1098.45394	-0.38808	-0.00021353	-0.0622	-3.4225E-05	-0.45028	-0.00024776	550.2342672068748	51.55	0.71143	51.55	51.219	51.93	0					27	13	3	0	0	0	0.0098926	1	18287	18287		118.07	57.679	1	7499600			11266	7302	7978	8046	11016	11016		372			-0.09134800387209907
ELDPTNMTY	9	Oxidation (M)	_ELDPTNM(Oxidation (M))TY_		ELDPTNM(1)TY		ELDPTNM(130)TY	0	0	1		nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1	nc|ENSG00000168439|P31948-3|STIP1	nc|ENSG00000168439|P31948-3|STIP1	MULTI-MSMS	A375_MHC_IP_R2	2	550.6339721679688	2	550.234247	1098.45394	-1.0166	-0.00055935	-1.2442	-0.00068458	-2.2607	-0.0012439	550.2343044925856	49.858	1.1688	50.612	50.193	51.361	0.75406					51	22	3	0	0	0	0.007896	2	18728	18728;18813		129.77	64.537	1	7048600			11267	7302	7978	8046	11017;11018	11017		372			-0.09134800387209907
ELDPTNMTY	9	Oxidation (M)	_ELDPTNM(Oxidation (M))TY_		ELDPTNM(1)TY		ELDPTNM(56)TY	0	0	1		nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1	nc|ENSG00000168439|P31948-3|STIP1	nc|ENSG00000168439|P31948-3|STIP1	MULTI-MSMS	A375_MHC_IP_R2	2	550.7392578125	2	550.234247	1098.45394	-0.8884	-0.00048883	0.20998	0.00011554	-0.67842	-0.00037329	550.2343615350561	51.068	0.60723	51.822	51.513	52.12	0.75406					20	11	2	0	0	0	0.070818	1	19176	19176		56.177	25.952	1	5850800			11268	7302	7978	8046	11019	11019		372			-0.09134800387209907
ELDPTNMTY	9	Unmodified	_ELDPTNMTY_					0	0	0		nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1	nc|ENSG00000168439|P31948-3|STIP1	nc|ENSG00000168439|P31948-3|STIP1	MULTI-MSMS	A375_MHC_IP_R1	1	542.6361083984375	2	542.23679	1082.45903	-0.59837	-0.00032446	-0.35412	-0.00019202	-0.95249	-0.00051647	542.2365835766561	75.1	0.86021	75.1	74.604	75.464	0					32	16	4	0	0	0	0.0090323	2	27340	27340;27382		99.799	54.552	1	4576200			11269	7302	7978	8047	11020;11021	11020					-0.07890496524601076
ELDPTNMTY	9	Unmodified	_ELDPTNMTY_					0	0	0		nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1	nc|ENSG00000168439|P31948-3|STIP1	nc|ENSG00000168439|P31948-3|STIP1	MULTI-MSMS	A375_MHC_IP_R2	2	542.6365356445312	2	542.23679	1082.45903	-0.88123	-0.00047783	0.064268	3.4848E-05	-0.81696	-0.00044298	542.2367719568017	74.647	0.66224	75.384	75.009	75.671	0.73751					28	12	3	0	0	0	0.0090323	1	28285	28285		99.799	65.397	1	6000600			11270	7302	7978	8047	11022	11022					-0.07890496524601076
ELDRFMHYY	9	Unmodified	_ELDRFMHYY_					0	0	0		ENSG00000001629|ENST00000265742|ANKIB1;ENST00000422095.1_3_7:92000906-92025787:+|nuORF	ENSG00000001629|ENST00000265742|ANKIB1	ENSG00000001629|ENST00000265742|ANKIB1	MULTI-MSMS	A375_MHC_IP_R1	1	637.6870727539062	2	637.287148	1272.55974	-0.8089	-0.0005155	0.34491	0.00021981	-0.46399	-0.00029569	637.2873529081758	65.454	0.41029	65.454	65.206	65.616	0					20	7	3	0	0	0	0.11448	1	23700	23700		59.368	27.063	1	2174200			11271	849	7979	8048	11023	11023					-0.06563419751068977
ELDRFMHYY	9	Unmodified	_ELDRFMHYY_					0	0	0		ENSG00000001629|ENST00000265742|ANKIB1;ENST00000422095.1_3_7:92000906-92025787:+|nuORF	ENSG00000001629|ENST00000265742|ANKIB1	ENSG00000001629|ENST00000265742|ANKIB1	MULTI-SECPEP	A375_MHC_IP_R1	1	424.6370544433594	3	425.193858	1272.55974	-0.23264	-9.8915E-05	0.2023	8.6018E-05	-0.030332	-1.2897E-05	425.19391926896225	65.42	0.81598	65.42	65.156	65.972	0					36	15	4	0	0	0	0.28216	1	23669	23669		49.933	49.933	1	7214800			11272	849	7979	8048	11024	11024					-0.06563419751068977
ELDRFMHYY	9	Unmodified	_ELDRFMHYY_					0	0	0		ENSG00000001629|ENST00000265742|ANKIB1;ENST00000422095.1_3_7:92000906-92025787:+|nuORF	ENSG00000001629|ENST00000265742|ANKIB1	ENSG00000001629|ENST00000265742|ANKIB1	MULTI-MSMS	A375_MHC_IP_R2	2	425.5939025878906	3	425.193858	1272.55974	-0.15274	-6.4946E-05	-0.28892	-0.00012285	-0.44166	-0.00018779	425.1936804039124	64.744	0.81504	65.483	65.052	65.868	0.73826					40	15	4	0	0	0	0.19747	1	24518	24518		38.176	32.307	1	7640700			11273	849	7979	8048	11025	11025					-0.06563419751068977
ELDRFMHYY	9	Unmodified	_ELDRFMHYY_					0	0	0		ENSG00000001629|ENST00000265742|ANKIB1;ENST00000422095.1_3_7:92000906-92025787:+|nuORF	ENSG00000001629|ENST00000265742|ANKIB1	ENSG00000001629|ENST00000265742|ANKIB1	MULTI-MSMS	A375_MHC_IP_R2	2	637.68701171875	2	637.287148	1272.55974	-0.76132	-0.00048518	0.27731	0.00017672	-0.48402	-0.00030846	637.2869808818757	64.778	0.50931	65.516	65.206	65.715	0.73811					22	9	4	0	0	0	0.026372	1	24555	24555		85.642	51.539	1	1867200			11274	849	7979	8048	11026	11026					-0.06563419751068977
ELDRHIRILHK	11	Unmodified	_ELDRHIRILHK_					0	0	0		ENSG00000198597|ENST00000355537|ZNF536	ENSG00000198597|ENST00000355537|ZNF536	ENSG00000198597|ENST00000355537|ZNF536	MSMS	A375_MHC_IP_R1	1	715.5299682617188	2	715.422959	1428.83137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.6	1	109.6	109.1	110.1	0								0	0	0	0.16297	1	40197	40197		3.2813	0.28607	1				11275	9288	7980	8049	11027	11027					0.13410310665403813
ELDRLIERME	10	Unmodified	_ELDRLIERME_					0	0	0		nc|ENSG00000263155|P0CAP1-8|MYZAP;nc|ENSG00000263155|P0CAP1-5|MYZAP;nc|ENSG00000263155|P0CAP1-10|MYZAP;nc|ENSG00000263155|P0CAP1-7|MYZAP;nc|ENSG00000263155|P0CAP1-6|MYZAP;nc|ENSG00000263155|P0CAP1-9|MYZAP;nc|ENSG00000263155|P0CAP1-3|MYZAP;nc|ENSG00000263155|P0CAP1-4|MYZAP;nc|ENSG00000263155|P0CAP1-2|MYZAP;ENSG00000263155|ENST00000267853|MYZAP;nc|ENSG00000263155|P0CAP1-11|MYZAP	nc|ENSG00000263155|P0CAP1-8|MYZAP	nc|ENSG00000263155|P0CAP1-8|MYZAP	MULTI-MSMS	A375_MHC_IP_R1	1	435.16607666015625	3	435.227338	1302.66019	-0.30645	-0.00013337	0.048241	2.0996E-05	-0.25821	-0.00011238	435.56187562986344	41.036	0.55396	41.036	40.712	41.266	0					26	10	4	0	0	0	0.72159	1	14060	14060		2.6312	0	1	2475800			11276	9952	7981	8050	11028	11028					0.02096192511908157
ELDRQELTY	9	Unmodified	_ELDRQELTY_					0	0	0		ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	MULTI-SECPEP	A375_MHC_IP_R1	1	584.1875	2	583.788035	1165.56152	-0.25315	-0.00014779	-0.72104	-0.00042093	-0.97418	-0.00056872	583.7873105303479	46.337	0.50215	46.337	46.094	46.596	0					14	9	2	0	0	0	0.44554	1	16280	16280		29.841	29.841	1	2874500			11277	6117	7982	8051	11029	11029					-0.014640874614542554
ELDRQELTY	9	Unmodified	_ELDRQELTY_					0	0	0		ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	MULTI-MATCH	A375_MHC_IP_R2	2		2	583.788035	1165.56152	-0.44046	-0.00025714	-1.5176	-0.00088597	-1.9581	-0.0011431	583.7872150426709	45.563	0.40197	46.328	46.15	46.552	0.76519	-0.0040497	-0.00032122	NaN	43.772	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1871100			11278	6117	7982	8051							-0.014640874614542554
ELDRRTHQL	9	Unmodified	_ELDRRTHQL_					0	0	0			REV__ENST00000571274.5_2_17:1417219-1418871:-|nuORF	REV__ENST00000571274.5_2_17:1417219-1418871:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	389.9206848144531	3	389.879149	1166.61562	-0.59799	-0.00023314	1.6529	0.00064445	1.0549	0.0004113	389.87818397907455	25.177	0.35889	25.821	25.719	26.078	0.64368					8	6	2	0	0	0	0.74169	1	8364	8364		11.495	0	1	922580	+		11279	26282	7983	8052	11030	11030					0.03897549480757334
ELDRTPPEV	9	Unmodified	_ELDRTPPEV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-SECPEP	A375_MHC_IP_R1	1	528.1328125	2	528.272021	1054.52949	-0.57142	-0.00030186	0.77554	0.0004097	0.20413	0.00010784	528.2719607722931	38.468	0.81461	38.468	38.168	38.983	0					35	15	3	0	0	0	0.05217	1	13079	13079		89.401	30.722	1	5039000			11280	8958	7984	8053	11031	11031					0.0044054485538254085
ELDRTPPEV	9	Unmodified	_ELDRTPPEV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-SECPEP	A375_MHC_IP_R2	2	528.6712036132812	2	528.272021	1054.52949	-0.72082	-0.00038079	0.10171	5.373E-05	-0.61911	-0.00032706	528.2717587379202	37.822	0.82174	38.596	38.175	38.997	0.77451					35	15	3	0	0	0	0.03341	1	13828	13828		93.166	24.061	1	5860800			11281	8958	7984	8053	11032	11032					0.0044054485538254085
ELDSEQVRY	9	Unmodified	_ELDSEQVRY_					0	0	0		ENSG00000135040|ENST00000361671|NAA35	ENSG00000135040|ENST00000361671|NAA35	ENSG00000135040|ENST00000361671|NAA35	MULTI-MSMS	A375_MHC_IP_R1	1	570.1721801757812	2	569.772385	1137.53022	-0.30886	-0.00017598	0.14563	8.2977E-05	-0.16323	-9.3005E-05	569.7724298237007	37.095	0.50615	37.095	36.845	37.351	0					19	9	3	0	0	0	0.1915	2	12506	12400;12506		49.933	19.296	1	3862600			11282	4635	7985	8054	11033;11034	11034					-0.03304660495564349
ELDSKVEVLTY	11	Unmodified	_ELDSKVEVLTY_					0	0	0		nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	MULTI-MSMS	A375_MHC_IP_R1	1	648.73974609375	2	648.340101	1294.66565	-0.32513	-0.00021079	0.39423	0.00025559	0.0691	4.48E-05	648.3403037909509	74.535	1.065	74.535	73.843	74.908	0					49	20	3	0	0	0	0.00035842	1	27020	27020		115.06	73.104	1	5797300			11283	6567	7986	8055	11035	11035					0.03010194575404057
ELDSKVEVLTY	11	Unmodified	_ELDSKVEVLTY_					0	0	0		nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	MULTI-MSMS	A375_MHC_IP_R2	2	648.7393798828125	2	648.340101	1294.66565	-0.64126	-0.00041575	0.58463	0.00037904	-0.056624	-3.6712E-05	648.3403176450624	73.72	0.81603	74.455	73.938	74.754	0.73541					35	15	3	0	0	0	7.6884E-06	2	27900	27900;27946		150.62	97.215	1	5507000			11284	6567	7986	8055	11036;11037	11036					0.03010194575404057
ELDTPINY	8	Unmodified	_ELDTPINY_					0	0	0		nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC;nc|ENSG00000134982|P25054-2|APC;APC|p.T1556Nfs*3|1|0.92|ENSG00000134982|chr5:112840254-112840255|-/A|frameshift_variant	nc|ENSG00000134982|P25054-3|APC	nc|ENSG00000134982|P25054-3|APC	MULTI-MSMS	A375_MHC_IP_R1	1	483.134521484375	2	482.73474	963.454927	-0.42212	-0.00020377	0.30868	0.00014901	-0.11344	-5.4761E-05	482.7347981955373	76.615	0.45782	76.615	76.421	76.878	0					14	8	2	0	0	0	0.16381	1	27930	27930		81.613	37.206	1	1421100			11285	4632	7987	8056	11038	11038					-0.028262179559988
ELDTPINY	8	Unmodified	_ELDTPINY_					0	0	0		nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC;nc|ENSG00000134982|P25054-2|APC;APC|p.T1556Nfs*3|1|0.92|ENSG00000134982|chr5:112840254-112840255|-/A|frameshift_variant	nc|ENSG00000134982|P25054-3|APC	nc|ENSG00000134982|P25054-3|APC	MULTI-MSMS	A375_MHC_IP_R2	2	483.1344299316406	2	482.73474	963.454927	-0.56602	-0.00027324	0.21374	0.00010318	-0.35228	-0.00017006	482.7347748908223	76.057	0.5063	76.798	76.487	76.994	0.74052					16	9	2	0	0	0	0.037539	1	28847	28847		120.45	60.061	1	2286600			11286	4632	7987	8056	11039	11039					-0.028262179559988
ELDTPYPRR	9	Unmodified	_ELDTPYPRR_					0	0	0			REV__nc|ENSG00000136146|Q9NPJ6-2|MED4	REV__nc|ENSG00000136146|Q9NPJ6-2|MED4	MULTI-SECPEP	A375_MHC_IP_R1	1	382.2874450683594	3	382.86825	1145.58292	0.45928	0.00017584	-0.43811	-0.00016774	0.021171	8.1057E-06	382.8678104061517	35.294	0.50902	35.294	35.064	35.573	0					14	9	2	0	0	0	0.74875	1	11797	11797		10.8	0	1	794300	+		11287	18918	7988	8057	11040	11040					0.015953423578821457
ELDVNTDIY	9	Unmodified	_ELDVNTDIY_					0	0	0		ENSG00000101188|ENST00000370501|NTSR1	ENSG00000101188|ENST00000370501|NTSR1	ENSG00000101188|ENST00000370501|NTSR1	MULTI-MSMS	A375_MHC_IP_R1	1	541.6553955078125	2	541.256037	1080.49752	-0.82306	-0.00044548	-0.23378	-0.00012654	-1.0568	-0.00057202	541.255917391822	84.672	0.61312	84.672	84.494	85.107	0					17	11	2	0	0	0	0.29981	3	31048	31048;31084;31125		30.637	8.8899	1	2100500			11288	2265	7989	8058	11041;11042;11043	11041					-0.03950867618414122
ELDVNTDIY	9	Unmodified	_ELDVNTDIY_					0	0	0		ENSG00000101188|ENST00000370501|NTSR1	ENSG00000101188|ENST00000370501|NTSR1	ENSG00000101188|ENST00000370501|NTSR1	MULTI-MSMS	A375_MHC_IP_R2	2	541.1896362304688	2	541.256037	1080.49752	-0.75369	-0.00040794	-2.8688	-0.0015527	-3.6225	-0.0019607	541.757124573333	84.174	1.1196	84.913	84.356	85.476	0.73962					35	21	3	0	0	0	0.34064	1	31948	31948		27.629	8.3718	1	2566000			11289	2265	7989	8058	11044	11044					-0.03950867618414122
ELDVVREIY	9	Unmodified	_ELDVVREIY_					0	0	0		ENSG00000157827|ENST00000288670|FMNL2;nc|ENSG00000157827|Q96PY5|FMNL2	ENSG00000157827|ENST00000288670|FMNL2	ENSG00000157827|ENST00000288670|FMNL2	MULTI-SECPEP	A375_MHC_IP_R1	1	568.7037353515625	2	568.303321	1134.59209	-0.18823	-0.00010697	-0.21047	-0.00011961	-0.3987	-0.00022658	568.3032062847768	82.545	0.91104	82.545	82.113	83.024	0					31	17	3	0	0	0	0.011308	1	30155	30155		128.93	14.731	1	13756000			11290	6268	7990	8059	11045	11045					0.030176909235933636
ELDVVREIY	9	Unmodified	_ELDVVREIY_					0	0	0		ENSG00000157827|ENST00000288670|FMNL2;nc|ENSG00000157827|Q96PY5|FMNL2	ENSG00000157827|ENST00000288670|FMNL2	ENSG00000157827|ENST00000288670|FMNL2	MULTI-SECPEP	A375_MHC_IP_R2	2	568.7030029296875	2	568.303321	1134.59209	-0.41738	-0.0002372	-0.18646	-0.00010597	-0.60385	-0.00034317	568.3033265004337	81.844	0.8638	82.587	82.179	83.042	0.74294					37	16	3	0	0	0	0.011308	1	31041	31041		128.93	14.731	1	10538000			11291	6268	7990	8059	11046	11046					0.030176909235933636
ELDYRNKEDY	10	Unmodified	_ELDYRNKEDY_					0	0	0			REV__ENSG00000165323|ENST00000525166|FAT3	REV__ENSG00000165323|ENST00000525166|FAT3	MSMS	A375_MHC_IP_R1	1	672.9815063476562	2	672.806956	1343.59936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.014	1	60.014	59.514	60.514	0								0	0	0	0.15105	1	21600	21600		15.847	1.0089	1		+		11292	20574	7991	8060	11047	11047					-0.05869621266674585
ELDYRNKEDY	10	Unmodified	_ELDYRNKEDY_					0	0	0			REV__ENSG00000165323|ENST00000525166|FAT3	REV__ENSG00000165323|ENST00000525166|FAT3	MSMS	A375_MHC_IP_R2	2	672.704833984375	2	672.806956	1343.59936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.595	1	60.342	59.842	60.842	0.74714								0	0	0	0.15105	1	22553	22553		15.847	2.8047	1		+		11293	20574	7991	8060	11048	11048					-0.05869621266674585
ELEALRQAMR	10	Unmodified	_ELEALRQAMR_					0	0	0		ENSG00000158106|ENST00000289013|RHPN1	ENSG00000158106|ENST00000289013|RHPN1	ENSG00000158106|ENST00000289013|RHPN1	MULTI-MSMS	A375_MHC_IP_R2	2	406.62030029296875	3	406.220407	1215.63939	0.11902	4.8346E-05	0.0021233	8.6253E-07	0.12114	4.9209E-05	406.22039145004766	68.107	0.4593	68.842	68.611	69.07	0.73511					12	8	2	0	0	0	0.39901	1	25837	25837		34.222	3.5183	1	1682500			11294	6286	7992	8061	11049	11049					0.040196469228931164
ELEASPDRFL	10	Unmodified	_ELEASPDRFL_					0	0	0			REV__ESPN|p.S338F|1|0.21|ENSG00000187017|chr1:6444503-6444503|C/T|missense_variant	REV__ESPN|p.S338F|1|0.21|ENSG00000187017|chr1:6444503-6444503|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	393.6335144042969	3	392.868027	1175.58225	0.20079	7.8883E-05	-0.92615	-0.00036385	-0.72536	-0.00028497	392.8677191016812	43.577	0.66297	43.577	43.043	43.706	0					16	12	2	0	0	0	0.85226	1	15135	15135		8.9762	2.7844	1	1550500	+		11295	26593	7993	8062	11050	11050					0.0014850291820494022
ELEATLLSL	9	Unmodified	_ELEATLLSL_					0	0	0		nc|ENSG00000241127|Q9NRH1-2|YAE1	nc|ENSG00000241127|Q9NRH1-2|YAE1	nc|ENSG00000241127|Q9NRH1-2|YAE1	MULTI-SECPEP	A375_MHC_IP_R2	2	495.1637878417969	2	494.78169	987.548827	-0.48621	-0.00024057	-0.88327	-0.00043703	-1.3695	-0.0006776	494.7815538342416	67.342	0.2546	68.078	67.951	68.205	0.73631					6	4	2	0	0	0	0.55359	1	25499	25499		15.847	4.2069	1	484290			11296	14912	7994	8063	11051	11051					0.054555011462980474
ELEATRDSLD	10	Unmodified	_ELEATRDSLD_					0	0	0		ENSG00000163820|ENST00000296137|FYCO1;nc|ENSG00000163820|Q9BQS8-4|FYCO1;nc|ENSG00000163820|Q9BQS8-3|FYCO1;nc|ENSG00000163820|Q9BQS8-2|FYCO1	ENSG00000163820|ENST00000296137|FYCO1	ENSG00000163820|ENST00000296137|FYCO1	MULTI-SECPEP	A375_MHC_IP_R1	1	575.16259765625	2	574.775125	1147.5357	-0.24261	-0.00013945	-4.4412	-0.0025527	-4.6838	-0.0026922	575.2720561052408	89.671	0.35403	89.671	89.476	89.83	0					9	6	2	0	0	0	0.8125	1	32898	32898		13.042	4.4492	1	531080			11297	6729	7995	8064	11052	11052					-0.032169817037583925
ELEDSTLRY	9	Unmodified	_ELEDSTLRY_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R1	1	563.6744995117188	2	563.274761	1124.53497	-0.069431	-3.9108E-05	0.47211	0.00026593	0.40268	0.00022682	563.2746215127137	48.354	1.0132	48.354	47.97	48.983	0					51	19	4	0	0	0	0.017727	2	16995	16995;17119		86.332	30.155	1	31688000			11298	14788	7996	8065	11053;11054	11053					-0.022317763528008072
ELEDSTLRY	9	Unmodified	_ELEDSTLRY_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R2	2	563.67431640625	2	563.274761	1124.53497	-0.393	-0.00022137	0.56835	0.00032014	0.17534	9.8767E-05	563.2745492662862	47.693	0.7592	48.454	48.123	48.883	0.76128					44	14	4	0	0	0	0.017727	3	17838	17838;17895;18057		86.332	30.155	1	31271000			11299	14788	7996	8065	11055;11056;11057	11055					-0.022317763528008072
ELEEASMKKW	10	Unmodified	_ELEEASMKKW_					0	0	0			REV__ENST00000592988.5_1_17:76183451-76198833:+|nuORF	REV__ENST00000592988.5_1_17:76183451-76198833:+|nuORF	MSMS	A375_MHC_IP_R2	2	625.7376708984375	2	625.807913	1249.60127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.788	1	68.524	68.024	69.024	0.73539								0	0	0	0.14925	1	25688	25688		19.257	1.1106	1		+		11300	21733	7997	8066	11058	11058					-0.01354283782393395
ELEEKLPVAVN	11	Unmodified	_ELEEKLPVAVN_					0	0	0		ENSG00000166889|ENST00000300146|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1	ENSG00000166889|ENST00000300146|PATL1	ENSG00000166889|ENST00000300146|PATL1	MULTI-MSMS	A375_MHC_IP_R1	1	414.6308288574219	3	414.230966	1239.67107	0.057816	2.3949E-05	-0.0086505	-3.5833E-06	0.049166	2.0366E-05	414.2308996076385	25.932	0.50612	25.932	25.765	26.271	0					22	9	3	0	0	0	0.64288	1	7668	7668		19.987	5.8162	1	8284800			11301	7129	7998	8067	11059	11059					0.06081918157860855
ELEEKLPVAVN	11	Unmodified	_ELEEKLPVAVN_					0	0	0		ENSG00000166889|ENST00000300146|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1	ENSG00000166889|ENST00000300146|PATL1	ENSG00000166889|ENST00000300146|PATL1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	414.230966	1239.67107	-0.43116	-0.0001786	-0.10243	-4.2428E-05	-0.53359	-0.00022103	414.23088738153245	25.214	0.56	25.858	25.668	26.229	0.64368	-0.037356	-5.2889E-05	NaN	19.987	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4950100			11302	7129	7998	8067							0.06081918157860855
ELEEQFELFI	10	Unmodified	_ELEEQFELFI_					0	0	0			REV__ENSG00000183111|ENST00000333677|ARHGEF37	REV__ENSG00000183111|ENST00000333677|ARHGEF37	MSMS	A375_MHC_IP_R1	1	433.2852783203125	3	432.883455	1295.62853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.92	1	100.92	100.42	101.42	0								0	0	0	0.15508	1	37094	37094		2.086	0.75636	1		+		11303	21737	7999	8068	11060	11060					-0.007454769703599595
ELEESDFKWWT	11	Unmodified	_ELEESDFKWWT_					0	0	0			REV__N4BP2L2|p.P512S|1|0.33|ENSG00000244754|chr13:32521389-32521389|G/A|missense_variant	REV__N4BP2L2|p.P512S|1|0.33|ENSG00000244754|chr13:32521389-32521389|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	735.73291015625	2	735.332807	1468.65106	-0.61584	-0.00045285	-0.27756	-0.0002041	-0.8934	-0.00065695	735.3326981305767	58.557	0.55846	58.557	58.278	58.836	0					32	10	4	0	0	0	0.72649	1	21005	21005		12.241	3.4953	1	15802000	+		11304	27077	8000	8069	11061	11061					-0.06451877572771991
ELEESDFKWWT	11	Unmodified	_ELEESDFKWWT_					0	0	0			REV__N4BP2L2|p.P512S|1|0.33|ENSG00000244754|chr13:32521389-32521389|G/A|missense_variant	REV__N4BP2L2|p.P512S|1|0.33|ENSG00000244754|chr13:32521389-32521389|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	735.332807	1468.65106	-1.1052	-0.00081272	-0.48059	-0.00035339	-1.5858	-0.0011661	735.3325427595446	57.822	0.60805	58.571	58.221	58.829	0.74894	0.0071508	-0.00012299	NaN	12.241	31	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12209000	+		11305	27077	8000	8069							-0.06451877572771991
ELEGETLHS	9	Unmodified	_ELEGETLHS_					0	0	0			REV__ENST00000479805.1_1_10:111886198-111892190:+|nuORF	REV__ENST00000479805.1_1_10:111886198-111892190:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.1358337402344	2	507.740554	1013.46655	-0.37289	-0.00018933	-0.60164	-0.00030548	-0.97453	-0.00049481	507.74018030637205	96.312	0.9641	96.312	95.817	96.781	0					30	18	2	0	0	0	0.65246	1	35561	35561		10.824	0	1	1862000	+		11306	19644	8001	8070	11062	11062					-0.0396402093266488
ELEHCPPY	8	Unmodified	_ELEHCPPY_					0	0	0		ENST00000378536.4_1_1:2238773-2238983:+|nuORF	ENST00000378536.4_1_1:2238773-2238983:+|nuORF	ENST00000378536.4_1_1:2238773-2238983:+|nuORF	MSMS	A375_MHC_IP_R1	1	494.21600341796875	2	494.21566	986.416767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.371	1	90.371	89.871	90.871	0								0	0	0	0.16876	1	33210	33210		10.183	0.83596	1				11307	11316	8002	8071	11063	11063					-0.07698427142315722
ELEKDMHYY	9	Unmodified	_ELEKDMHYY_					0	0	0		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-MSMS	A375_MHC_IP_R1	1	410.25	3	409.849868	1226.52777	0.13971	5.7259E-05	-0.22592	-9.2595E-05	-0.086216	-3.5336E-05	409.849821507189	35.366	0.45842	35.366	35.218	35.676	0					20	8	3	0	0	0	0.05754	1	11775	11775		47.594	26.004	1	2851300			11308	1784	8003	8072	11064	11064					-0.07642832224860285
ELEKDMHYY	9	Unmodified	_ELEKDMHYY_					0	0	0		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-MSMS	A375_MHC_IP_R2	2	614.6702270507812	2	614.271164	1226.52777	-0.77526	-0.00047622	0.20848	0.00012807	-0.56677	-0.00034815	614.2712678605142	34.737	0.35427	35.501	35.273	35.627	0.76338					11	6	2	0	0	0	0.047602	1	12597	12597		65.235	29.108	1	3183600			11309	1784	8003	8072	11065	11065					-0.07642832224860285
ELEKDMHYY	9	Unmodified	_ELEKDMHYY_					0	0	0		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-SECPEP	A375_MHC_IP_R2	2	410.2497863769531	3	409.849868	1226.52777	-0.18021	-7.3858E-05	-0.39544	-0.00016207	-0.57564	-0.00023593	409.84975980717104	34.678	0.55559	35.441	35.222	35.778	0.76338					21	10	3	0	0	0	0.37663	1	12544	12544		43.772	24.41	1	4732900			11310	1784	8003	8072	11066	11066					-0.07642832224860285
ELEKDMHYY	9	Unmodified	_ELEKDMHYY_					0	0	0		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-MATCH	A375_MHC_IP_R1	1		2	614.271164	1226.52777	-0.17881	-0.00010984	-0.67866	-0.00041688	-0.85747	-0.00052672	614.270764004608	35.444	0.35518	35.444	35.218	35.573	0	-0.028154	-0.00063619	NaN	65.235	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1463600			11311	1784	8003	8072							-0.07642832224860285
ELEKDMHYY	9	Oxidation (M)	_ELEKDM(Oxidation (M))HYY_		ELEKDM(1)HYY		ELEKDM(86)HYY	0	0	1		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-MSMS	A375_MHC_IP_R2	2	622.6679077148438	2	622.268621	1242.52269	-1.1354	-0.00070652	-0.099708	-6.2045E-05	-1.2351	-0.00076857	622.2686389838966	24.796	0.25451	25.439	25.364	25.619	0.64368					7	4	2	0	0	0	0.017727	1	8243	8243		86.332	48.358	1	3174400			11312	1784	8003	8073	11067	11067		60			-0.08887136087491854
ELEKLLDKKQ	10	Unmodified	_ELEKLLDKKQ_					0	0	0		DIAPH2|p.D982Afs*5|1|0.38|ENSG00000147202|chrX:97348216-97348216|A/-|frameshift_variant;nc|ENSG00000147202|O60879-2|DIAPH2;nc|ENSG00000147202|O60879-3|DIAPH2;ENSG00000147202|ENST00000324765|DIAPH2	DIAPH2|p.D982Afs*5|1|0.38|ENSG00000147202|chrX:97348216-97348216|A/-|frameshift_variant	DIAPH2|p.D982Afs*5|1|0.38|ENSG00000147202|chrX:97348216-97348216|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	415.6468200683594	3	415.246727	1242.71835	0.15701	6.5197E-05	-0.44372	-0.00018425	-0.28672	-0.00011906	415.2465354724506	19.469	0.38484	19.469	19.238	19.623	0					14	7	4	0	0	0	0.71076	1	4870	4870		7.4771	1.2852	1	4469900			11313	744	8004	8074	11068	11068					0.10670197428862593
ELEKLRKLAIA	11	Unmodified	_ELEKLRKLAIA_					0	0	0			REV__ENST00000354485.5_1_9:676972-730286:+|nuORF	REV__ENST00000354485.5_1_9:676972-730286:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	428.8513488769531	3	428.606367	1282.79727	-0.52837	-0.00022646	0.35448	0.00015193	-0.17389	-7.4531E-05	428.6064540219551	20.553	0.61014	21.163	20.752	21.362	0.61029					20	11	2	0	0	0	1.0004	1	6437	6437		1.2148	0	1	831870	+		11314	17473	8005	8075	11069	11069					0.167184694538264
ELEKQKTKL	9	Unmodified	_ELEKQKTKL_					0	0	0			REV__nc|ENSG00000079616|Q14807-2|KIF22	REV__nc|ENSG00000079616|Q14807-2|KIF22	MULTI-MSMS	A375_MHC_IP_R2	2	373.26513671875	3	372.892284	1115.65502	0.49507	0.00018461	0.88513	0.00033006	1.3802	0.00051467	373.22659360059413	27.371	0.30638	28.05	27.792	28.098	0.67857					7	5	2	0	0	0	0.70411	1	9362	9362		6.6304	0.43853	1	2257800	+		11315	16737	8006	8076	11070	11070					0.1018225671161872
ELEKSLEYSTV	11	Unmodified	_ELEKSLEYSTV_					0	0	0		ENSG00000188316|ENST00000341276|ENO4	ENSG00000188316|ENST00000341276|ENO4	ENSG00000188316|ENST00000341276|ENO4	MULTI-MSMS	A375_MHC_IP_R2	2	433.1537780761719	3	433.222247	1296.64491	-0.29463	-0.00012764	0.55921	0.00024226	0.26458	0.00011462	433.2225637067104	70.693	2.4814	71.427	71.099	73.58	0.73421					160	48	6	0	0	0	0.72728	1	27431	27431		6.2344	1.1868	1	851400000			11316	8901	8007	8077	11071	11071					0.008456041957060734
ELEKSVYWDY	10	Unmodified	_ELEKSVYWDY_					0	0	0		nc|ENSG00000141258|O43147-5|SGSM2;nc|ENSG00000141258|O43147|SGSM2;ENSG00000141258|ENST00000268989|SGSM2	nc|ENSG00000141258|O43147-5|SGSM2	nc|ENSG00000141258|O43147-5|SGSM2	MULTI-MSMS	A375_MHC_IP_R1	1	666.711181640625	2	666.311343	1330.60813	-0.64016	-0.00042654	0.22187	0.00014784	-0.41828	-0.00027871	666.3113476209255	76.472	0.76117	76.472	76.168	76.93	0					49	14	4	0	0	0	0.00093258	1	27825	27825		147.24	91.738	1	19487000			11317	5223	8008	8078	11072	11072					-0.04394647630169857
ELEKSVYWDY	10	Unmodified	_ELEKSVYWDY_					0	0	0		nc|ENSG00000141258|O43147-5|SGSM2;nc|ENSG00000141258|O43147|SGSM2;ENSG00000141258|ENST00000268989|SGSM2	nc|ENSG00000141258|O43147-5|SGSM2	nc|ENSG00000141258|O43147-5|SGSM2	MSMS	A375_MHC_IP_R1	1	666.2423706054688	2	666.311343	1330.60813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.097	1	77.097	76.597	77.597	0								0	0	0	0.1524	1	28120	28120		13.042	0.80181	1				11318	5223	8008	8078	11073	11073					-0.04394647630169857
ELEKSVYWDY	10	Unmodified	_ELEKSVYWDY_					0	0	0		nc|ENSG00000141258|O43147-5|SGSM2;nc|ENSG00000141258|O43147|SGSM2;ENSG00000141258|ENST00000268989|SGSM2	nc|ENSG00000141258|O43147-5|SGSM2	nc|ENSG00000141258|O43147-5|SGSM2	MULTI-MSMS	A375_MHC_IP_R2	2	666.7108154296875	2	666.311343	1330.60813	-0.80439	-0.00053598	0.13561	9.0359E-05	-0.66878	-0.00044562	666.3113737006274	75.847	0.91624	76.587	76.282	77.199	0.74052					50	17	4	0	0	0	0.0022429	2	28745	28745;28957		139.38	95.606	1	18104000			11319	5223	8008	8078	11074;11075	11074					-0.04394647630169857
ELELFPRYL	9	Unmodified	_ELELFPRYL_					0	0	0		ENSG00000170832|ENST00000300896|USP32;ENST00000587651.1_1_17:58296950-58303472:-|nuORF	ENSG00000170832|ENST00000300896|USP32	ENSG00000170832|ENST00000300896|USP32	MULTI-SECPEP	A375_MHC_IP_R1	1	393.137451171875	3	393.88513	1178.63356	-0.0088388	-3.4815E-06	0.42434	0.00016714	0.4155	0.00016366	393.88526950407214	39.501	0.30381	39.501	39.289	39.592	0					9	5	2	0	0	0	0.76452	1	13530	13530		12.241	5.6103	1	1259700			11320	7544	8009	8079	11076	11076					0.051388716829023906
ELELLSHRP	9	Unmodified	_ELELLSHRP_					0	0	0			REV__ENST00000537969.5_1_10:74879245-74884898:+|nuORF	REV__ENST00000537969.5_1_10:74879245-74884898:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	365.2537841796875	3	365.204862	1092.59276	-0.26956	-9.8444E-05	0.18952	6.9215E-05	-0.080035	-2.9229E-05	365.20489358809255	58.282	0.35835	59.031	58.929	59.287	0.74894					15	6	3	0	0	0	0.4867	1	22121	22121		14.405	0.88672	1	2846900	+		11321	20669	8010	8080	11077	11077					0.0501653036328662
ELELLSHRP	9	Unmodified	_ELELLSHRP_					0	0	0			REV__ENST00000537969.5_1_10:74879245-74884898:+|nuORF	REV__ENST00000537969.5_1_10:74879245-74884898:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	365.204862	1092.59276	0.21421	7.8231E-05	0.32427	0.00011843	0.53848	0.00019666	365.53922270271573	59.381	0.5071	59.381	59.041	59.548	0	0.17499	8.9545E-05	NaN	14.405	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2470500	+		11322	20669	8010	8080							0.0501653036328662
ELEMNNWIL	9	Unmodified	_ELEMNNWIL_					0	0	0			REV__ENSG00000172671|ENST00000344646|ZFAND4	REV__ENSG00000172671|ENST00000344646|ZFAND4	MULTI-SECPEP	A375_MHC_IP_R1	1	387.2803955078125	3	387.858475	1160.5536	0.52436	0.00020338	-0.096719	-3.7513E-05	0.42764	0.00016586	387.85851161987915	22.699	2.3348	22.699	22.062	24.397	0					136	45	6	0	0	0	0.62767	1	6647	6647		16.149	0.90062	1	306260000	+		11323	21162	8011	8081	11078	11078					-0.02025937982580217
ELEPDLEW	8	Unmodified	_ELEPDLEW_					0	0	0		ENSG00000100842|ENST00000216733|EFS;nc|ENSG00000100842|O43281-2|EFS	ENSG00000100842|ENST00000216733|EFS	ENSG00000100842|ENST00000216733|EFS	MULTI-MSMS	A375_MHC_IP_R2	2	516.192626953125	2	515.740022	1029.46549	-0.88382	-0.00045582	-3.3532	-0.0017294	-4.237	-0.0021852	516.2397250272849	55.833	0.25399	56.583	56.388	56.642	0.75015					6	4	2	0	0	0	0.77123	1	21097	21097		14.582	1.0738	1	1664900			11324	2225	8012	8082	11079	11079					-0.048062353015666304
ELEQHQWQ	8	Unmodified	_ELEQHQWQ_					0	0	0			REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18	REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18	MULTI-SECPEP	A375_MHC_IP_R1	1	548.68310546875	2	549.254163	1096.49377	-0.46429	-0.00025501	-1.9947	-0.0010956	-2.459	-0.0013506	549.7547843584632	56.861	0.40769	56.861	56.701	57.109	0					13	7	3	0	0	0	0.91495	1	20428	20428		12.532	6.3258	1	778060	+		11325	17346	8013	8083	11080	11080					-0.05061492601635109
ELEQTLRQREQ	11	Unmodified	_ELEQTLRQREQ_					0	0	0			REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	MULTI-MSMS	A375_MHC_IP_R2	2	715.7742919921875	2	715.373329	1428.73211	-0.60634	-0.00043376	1.586	0.0011346	0.97965	0.00070082	715.8756640827463	110.07	0.40916	110.81	110.63	111.04	0.73692					13	7	2	0	0	0	0.72801	1	41576	41576		10.8	1.2555	1	2622000	+		11326	27175	8014	8084	11081	11081					0.034888231900140454
ELEQTLRQREQ	11	Unmodified	_ELEQTLRQREQ_					0	0	0			REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	715.373329	1428.73211	-0.44856	-0.00032089	3.1885	0.002281	2.7399	0.0019601	715.8764231379573	110.92	0.71724	110.92	110.49	111.21	0	0.055772	0.00066748	NaN	10.8	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1804700	+		11327	27175	8014	8084							0.034888231900140454
ELEQTLRQREQ	11	Unmodified	_ELEQTLRQREQ_					0	0	0			REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	715.373329	1428.73211	-0.60634	-0.00043376	1.586	0.0011346	0.97965	0.00070082	715.8756640827463	110.07	0.40916	110.81	110.63	111.04	0.73692	-0.055772	-0.0016253	NaN	10.8	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2622000	+		11328	27175	8014	8084							0.034888231900140454
ELERAFGYY	9	Unmodified	_ELERAFGYY_					0	0	0		nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	MULTI-MSMS	A375_MHC_IP_R1	1	574.6746215820312	2	574.274564	1146.53457	-0.57717	-0.00033146	2.0527	0.0011788	1.4756	0.00084738	574.2748411992372	67.71	1.2186	67.71	67.194	68.412	0					57	23	5	0	0	0	0.0099737	1	24514	24514		96.367	50.346	1	5271800			11329	3048	8015	8085	11082	11082					-0.032831512819939235
ELERAFGYY	9	Unmodified	_ELERAFGYY_					0	0	0		nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	MULTI-MSMS	A375_MHC_IP_R2	2	574.6740112304688	2	574.274564	1146.53457	-0.26593	-0.00015272	1.9286	0.0011076	1.6627	0.00095485	574.2742207114084	66.997	0.91513	67.733	67.29	68.205	0.73631					44	17	5	0	0	0	0.0099737	1	25382	25382		96.367	58.393	1	4964900			11330	3048	8015	8085	11083	11083					-0.032831512819939235
ELERAFSYY	9	Unmodified	_ELERAFSYY_					0	0	0		nc|ENSG00000115875|Q16629-3|SRSF7;nc|ENSG00000115875|Q16629-2|SRSF7;nc|ENSG00000115875|Q16629-4|SRSF7;ENSG00000115875|ENST00000313117|SRSF7;SRSF7|p.P36L|1|0.22|ENSG00000115875|chr2:38750116-38750116|G/A|missense_variant	nc|ENSG00000115875|Q16629-3|SRSF7	nc|ENSG00000115875|Q16629-3|SRSF7	MULTI-SECPEP	A375_MHC_IP_R1	1	589.71337890625	2	589.279846	1176.54514	-0.65167	-0.00038401	1.0214	0.00060187	0.36971	0.00021786	589.280158970049	67.526	0.60931	67.526	67.245	67.854	0					25	11	3	0	0	0	0.0575	1	24419	24419		76.825	46.188	1	4870500			11331	3347	8016	8086	11084	11084					-0.03607168627581814
ELERAFSYY	9	Unmodified	_ELERAFSYY_					0	0	0		nc|ENSG00000115875|Q16629-3|SRSF7;nc|ENSG00000115875|Q16629-2|SRSF7;nc|ENSG00000115875|Q16629-4|SRSF7;ENSG00000115875|ENST00000313117|SRSF7;SRSF7|p.P36L|1|0.22|ENSG00000115875|chr2:38750116-38750116|G/A|missense_variant	nc|ENSG00000115875|Q16629-3|SRSF7	nc|ENSG00000115875|Q16629-3|SRSF7	MULTI-MSMS	A375_MHC_IP_R2	2	589.68017578125	2	589.279846	1176.54514	-0.64218	-0.00037842	0.8869	0.00052263	0.24472	0.00014421	589.2800677617736	66.886	0.5602	67.623	67.29	67.85	0.73631					29	10	3	0	0	0	0.027818	2	25309	25276;25309		76.825	44.039	1	5338600			11332	3347	8016	8086	11085;11086	11086					-0.03607168627581814
ELERKARHWS	10	Unmodified	_ELERKARHWS_					0	0	0		ENST00000489511.5_1_22:50660905-50663012:-|nuORF	ENST00000489511.5_1_22:50660905-50663012:-|nuORF	ENST00000489511.5_1_22:50660905-50663012:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	656.283203125	2	656.34946	1310.68437	-0.80692	-0.00052962	-0.098295	-6.4516E-05	-0.90522	-0.00059414	656.3492968075814	141.36	0.61903	141.36	140.91	141.52	0					15	11	2	0	0	0	0.72416	1	54193	54193		1.4819	0	1	321140			11333	12632	8017	8087	11087	11087					0.0414521378045265
ELERKQLRR	9	Unmodified	_ELERKQLRR_					0	0	0			REV__ENST00000337385.7_1_21:35821964-35883431:-|nuORF	REV__ENST00000337385.7_1_21:35821964-35883431:-|nuORF	MSMS	A375_MHC_IP_R2	2	614.2462768554688	2	614.367653	1226.72075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.485	1	93.224	92.724	93.724	0.73902								0	0	0	0.15486	1	35172	35172		7.2892	0	1		+		11334	23691	8018	8088	11088	11088					0.11646090677163556
ELERLTSLY	9	Unmodified	_ELERLTSLY_					0	0	0		nc|ENSG00000164031|Q8TBM8-2|DNAJB14;ENSG00000164031|ENST00000442697|DNAJB14	nc|ENSG00000164031|Q8TBM8-2|DNAJB14	nc|ENSG00000164031|Q8TBM8-2|DNAJB14	MULTI-MSMS	A375_MHC_IP_R1	1	562.4931640625	2	562.303321	1122.59209	-0.48878	-0.00027484	0.10524	5.9176E-05	-0.38354	-0.00021567	562.303369908189	76.013	1.062	76.013	75.714	76.776	0					50	20	4	0	0	0	0.14922	1	27981	27981		41.84	11.203	1	27338000			11335	6760	8019	8089	11089	11089					0.03569690923586677
ELERLTSLY	9	Unmodified	_ELERLTSLY_					0	0	0		nc|ENSG00000164031|Q8TBM8-2|DNAJB14;ENSG00000164031|ENST00000442697|DNAJB14	nc|ENSG00000164031|Q8TBM8-2|DNAJB14	nc|ENSG00000164031|Q8TBM8-2|DNAJB14	MULTI-SECPEP	A375_MHC_IP_R2	2	562.6486206054688	2	562.303321	1122.59209	-0.60015	-0.00033747	-0.28106	-0.00015804	-0.88121	-0.00049551	562.3031667351339	75.272	1.3706	76.01	75.672	77.042	0.7382					50	26	4	0	0	0	0.030244	1	28581	28581		107.1	31.339	1	22787000			11336	6760	8019	8089	11090	11090					0.03569690923586677
ELERRFRQQRY	11	Unmodified	_ELERRFRQQRY_					0	0	0		ENSG00000136327|ENST00000258829|NKX2-8;ENSG00000125820|ENST00000377142|NKX2-2	ENSG00000136327|ENST00000258829|NKX2-8	ENSG00000136327|ENST00000258829|NKX2-8	MSMS	A375_MHC_IP_R2	2	527.6493530273438	3	527.618329	1579.83316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.814	1	86.55	86.05	87.05	0.73601								0	0	0	0.16224	1	32630	32630		7.0371	5.7074	1				11337	3994	8020	8090	11091	11091					0.06643319683371374
ELERRFRQQRY	11	Unmodified	_ELERRFRQQRY_					0	0	0		ENSG00000136327|ENST00000258829|NKX2-8;ENSG00000125820|ENST00000377142|NKX2-2	ENSG00000136327|ENST00000258829|NKX2-8	ENSG00000136327|ENST00000258829|NKX2-8	MSMS	A375_MHC_IP_R2	2	790.7073974609375	2	790.923855	1579.83316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.62	1	128.86	128.36	129.36	0.23946								0	0	0	0.16338	1	50519	50519		2.7352	2.7352	1				11338	3994	8020	8090	11092	11092					0.06643319683371374
ELERSEFF	8	Unmodified	_ELERSEFF_					0	0	0		tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1	tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1	tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	529.1341552734375	2	528.753464	1055.49238	-0.911	-0.00048169	-0.14494	-7.664E-05	-1.0559	-0.00055833	528.7533799169423	59.642	0.25383	60.389	60.299	60.553	0.74714					8	4	2	0	0	0	0.92636	1	22550	22550		16.942	1.0951	1	1078100			11339	30025	8021	8091	11093	11093					-0.03315126690381476
ELESHSSIN	9	Unmodified	_ELESHSSIN_					0	0	0			REV__ENST00000440623.5_1_2:182756982-182781157:+|nuORF	REV__ENST00000440623.5_1_2:182756982-182781157:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	508.6922912597656	2	508.238178	1014.4618	-0.3897	-0.00019806	2.6733	0.0013587	2.2836	0.0011606	508.23870131837407	59.566	0.66008	59.566	59.245	59.905	0					21	12	2	0	0	0	0.46038	1	21430	21430		21.747	4.8044	1	979740	+		11340	19095	8022	8092	11094	11094					-0.044849050754237396
ELESIERSY	9	Unmodified	_ELESIERSY_					0	0	0		ZNF26|p.Q440Hfs*9|1|0.28|ENSG00000198393|chr12:133011198-133011205|AGCTGATT/-|frameshift_variant;ENSG00000198393|ENST00000328654|ZNF26	ZNF26|p.Q440Hfs*9|1|0.28|ENSG00000198393|chr12:133011198-133011205|AGCTGATT/-|frameshift_variant	ZNF26|p.Q440Hfs*9|1|0.28|ENSG00000198393|chr12:133011198-133011205|AGCTGATT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	563.6934204101562	2	563.274761	1124.53497	-0.069431	-3.9108E-05	0.47211	0.00026593	0.40268	0.00022682	563.2746215127137	48.354	1.0132	48.354	47.97	48.983	0					51	19	4	0	0	0	0.17338	1	17297	17297		39.95	10.868	1	31688000			11341	9264	8023	8093	11095	11095					-0.022317763528008072
ELESNDNIQ	9	Unmodified	_ELESNDNIQ_					0	0	0			REV__nc|ENSG00000085274|Q9NPC7-3|MYNN	REV__nc|ENSG00000085274|Q9NPC7-3|MYNN	MSMS	A375_MHC_IP_R2	2	531.18505859375	2	531.240918	1060.46728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.483	1	58.232	57.732	58.732	0.74894								0	0	0	0.15411	1	21737	21737		14.838	2.3067	1		+		11342	16832	8024	8094	11096	11096					-0.06053226283620461
ELETRNLW	8	Unmodified	_ELETRNLW_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN	REV__ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	A375_MHC_IP_R1	1	531.1849975585938	2	530.774731	1059.53491	-0.64069	-0.00034006	-0.039926	-2.1191E-05	-0.68061	-0.00036125	530.7747340781456	58.4	0.40522	58.4	58.126	58.531	0					11	7	2	0	0	0	0.72008	1	20973	20973		28.487	5.3384	1	894400	+		11343	19819	8025	8095	11097	11097					0.007522684378500344
ELEVSFYW	8	Unmodified	_ELEVSFYW_					0	0	0		ENST00000507185.1_1_5:139661015-139682658:-|nuORF	ENST00000507185.1_1_5:139661015-139682658:-|nuORF	ENST00000507185.1_1_5:139661015-139682658:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1321411132812	2	536.752933	1071.49131	-1.2283	-0.00065928	0.23594	0.00012664	-0.99235	-0.00053265	536.7525353543443	60.144	1.4185	60.891	59.641	61.059	0.74714					31	27	2	0	0	0	0.85124	1	22578	22578		26.341	0	1	1511700			11344	12861	8026	8096	11098	11098					-0.041573410592718574
ELEWLMSL	8	Unmodified	_ELEWLMSL_					0	0	0		ENSG00000169885|ENST00000307786|CALML6	ENSG00000169885|ENST00000307786|CALML6	ENSG00000169885|ENST00000307786|CALML6	MSMS	A375_MHC_IP_R1	1	510.7151184082031	2	510.757161	1019.49977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.279	1	68.279	67.779	68.779	0								0	0	0	0.16876	1	24752	24752		12.532	0	1				11345	7446	8027	8097	11099	11099					-0.009201104143130578
ELFAHVRM	8	Unmodified	_ELFAHVRM_					0	0	0			REV__ENSG00000173473|ENST00000254480|SMARCC1	REV__ENSG00000173473|ENST00000254480|SMARCC1	MULTI-SECPEP	A375_MHC_IP_R2	2	501.64117431640625	2	501.763112	1001.51167	-0.51291	-0.00025736	-3.1054	-0.0015582	-3.6183	-0.0018155	501.76075910381957	69.248	0.3538	69.983	69.779	70.132	0.73463					11	6	2	0	0	0	0.96266	1	26229	26229		11.64	3.7301	1	705430	+		11346	21224	8028	8098	11100	11100					0.010975511195397303
ELFCHLHTV	9	Unmodified	_ELFCHLHTV_					0	0	0		PTPRZ1|p.R833C|1|0.34|ENSG00000106278|chr7:122011543-122011543|C/T|missense_variant	PTPRZ1|p.R833C|1|0.34|ENSG00000106278|chr7:122011543-122011543|C/T|missense_variant	PTPRZ1|p.R833C|1|0.34|ENSG00000106278|chr7:122011543-122011543|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	550.1739501953125	2	549.773677	1097.5328	-0.90079	-0.00049523	1.2806	0.00070405	0.37983	0.00020882	549.7746276808534	51.127	0.85962	51.881	51.412	52.272	0.75406					54	14	5	0	0	0	0.55359	1	19183	19183		10.824	0	1	11755000			11347	15255	8029	8099	11101	11101					-0.012064835716046218
ELFGLEDLF	9	Unmodified	_ELFGLEDLF_					0	0	0			REV__ENSG00000065427|ENST00000302445|KARS1	REV__ENSG00000065427|ENST00000302445|KARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	541.1716918945312	2	541.773865	1081.53318	-0.42085	-0.00022801	-0.73529	-0.00039836	-1.1561	-0.00062637	542.2752105223303	72.17	0.25272	72.17	72.069	72.321	0					7	4	2	0	0	0	0.67483	1	26286	26286		14.838	1.7958	1	543610	+		11348	16498	8030	8100	11102	11102					-0.004327853707536633
ELFHMYRY	8	Unmodified	_ELFHMYRY_					0	0	0			REV__ENSG00000257093|ENST00000536163|DENND11	REV__ENSG00000257093|ENST00000536163|DENND11	MULTI-SECPEP	A375_MHC_IP_R2	2	386.2885437011719	3	386.851543	1157.5328	-0.1821	-7.0447E-05	1.6313	0.00063107	1.4492	0.00056062	386.85213704086067	39.927	0.40528	40.702	40.524	40.93	0.77451					8	5	2	0	0	0	0.972	1	14831	14831		1.4819	1.3004	1	2276900	+		11349	22888	8031	8101	11103	11103					-0.03966483571593926
ELFIKRKR	8	Unmodified	_ELFIKRKR_					0	0	0			REV__ENST00000427574.6_1_11:76156149-76164398:+|nuORF	REV__ENST00000427574.6_1_11:76156149-76164398:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	364.610595703125	3	363.901226	1088.68185	-0.44932	-0.00016351	-0.70047	-0.0002549	-1.1498	-0.00041841	363.90093160230225	38.45	0.20226	39.225	39.098	39.3	0.77451					5	3	2	0	0	0	0.972	1	14173	14173		6.2058	0.47393	1	715690	+		11350	24666	8032	8102	11104	11104					0.14105410113461403
ELFKDLEMF	9	Unmodified	_ELFKDLEMF_					0	0	0			REV__nc|ENSG00000185189|Q9NSY0-2|NRBP2	REV__nc|ENSG00000185189|Q9NSY0-2|NRBP2	MSMS	A375_MHC_IP_R2	2	586.2044677734375	2	586.288825	1170.5631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.419	1	69.154	68.654	69.654	0.73511								0	0	0	0.11332	1	25927	25927		37.974	3.8716	1		+		11351	21876	8033	8103	11105	11105					-0.015361696970785488
ELFQQQRL	8	Unmodified	_ELFQQQRL_					0	0	0			REV__ENSG00000119927|ENST00000348367|GPAM	REV__ENSG00000119927|ENST00000348367|GPAM	MULTI-SECPEP	A375_MHC_IP_R2	2	531.690185546875	2	531.290548	1060.56654	-0.63241	-0.00033599	-0.52144	-0.00027704	-1.1538	-0.00061303	531.2901484161752	103.36	0.91479	104.13	103.84	104.75	0.76428					34	17	4	0	0	0	0.91495	1	39130	39130		18.135	18.135	1	2817200	+		11352	18104	8034	8104	11106	11106					0.03868261191814781
ELFSSPPAV	9	Unmodified	_ELFSSPPAV_					0	0	0		nc|ENSG00000102908|O94916|NFAT5;nc|ENSG00000102908|O94916-4|NFAT5;ENSG00000102908|ENST00000349945|NFAT5;nc|ENSG00000102908|O94916-2|NFAT5	nc|ENSG00000102908|O94916|NFAT5	nc|ENSG00000102908|O94916|NFAT5	MULTI-MSMS	A375_MHC_IP_R1	1	474.1482849121094	2	473.74765	945.480748	-0.37571	-0.00017799	-0.095724	-4.5349E-05	-0.47144	-0.00022334	473.7477194328499	92.062	0.75779	92.062	91.655	92.413	0					25	14	2	0	0	0	0.021919	1	33745	33745		81.864	34.943	1	3330800			11353	2401	8035	8105	11107	11107					0.005826762862966461
ELFSSPPAV	9	Unmodified	_ELFSSPPAV_					0	0	0		nc|ENSG00000102908|O94916|NFAT5;nc|ENSG00000102908|O94916-4|NFAT5;ENSG00000102908|ENST00000349945|NFAT5;nc|ENSG00000102908|O94916-2|NFAT5	nc|ENSG00000102908|O94916|NFAT5	nc|ENSG00000102908|O94916|NFAT5	MULTI-MSMS	A375_MHC_IP_R2	2	474.1474914550781	2	473.74765	945.480748	-0.46208	-0.00021891	0.15909	7.5368E-05	-0.30299	-0.00014354	473.7477612807038	91.342	0.86363	92.077	91.666	92.53	0.7345					31	16	3	0	0	0	0.0091485	1	34698	34698		101.72	38.159	1	5701700			11354	2401	8035	8105	11108	11108					0.005826762862966461
ELFTRRRPF	9	Unmodified	_ELFTRRRPF_					0	0	0			REV__ENSG00000174807|ENST00000311330|CD248	REV__ENSG00000174807|ENST00000311330|CD248	MULTI-SECPEP	A375_MHC_IP_R2	2	408.2996520996094	3	407.899885	1220.67783	-0.042771	-1.7446E-05	-0.46886	-0.00019125	-0.51163	-0.00020869	407.89970073337065	27.951	0.30506	28.63	28.452	28.757	0.67857					7	5	2	0	0	0	0.80101	1	9644	9644		2.7352	0	1	2315100	+		11355	21303	8036	8106	11109	11109					0.07631320619748294
ELFWQEPEH	9	Unmodified	_ELFWQEPEH_					0	0	0		EPHA7|p.S462F|1|0.35|ENSG00000135333|chr6:93272362-93272362|G/A|missense_variant	EPHA7|p.S462F|1|0.35|ENSG00000135333|chr6:93272362-93272362|G/A|missense_variant	EPHA7|p.S462F|1|0.35|ENSG00000135333|chr6:93272362-93272362|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	608.2483520507812	2	607.77747	1213.54039	-0.39622	-0.00024082	1.8597	0.0011303	1.4635	0.00088948	607.777445310404	94.164	1.9824	94.164	93.433	95.415	0					83	38	4	0	0	0	0.70307	1	34436	34436		6.7232	0.51738	1	10621000			11356	13947	8037	8107	11110	11110					-0.05784052770331982
ELFYDRFFEPL	11	Unmodified	_ELFYDRFFEPL_					0	0	0			REV__ENST00000556096.6_1_15:91550096-91560227:-|nuORF	REV__ENST00000556096.6_1_15:91550096-91560227:-|nuORF	MSMS	A375_MHC_IP_R2	2	492.4775695800781	3	492.578365	1474.71327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.993	1	44.762	44.262	45.262	0.7691								0	0	0	0.16275	1	16409	16409		4.4062	3.2964	1		+		11357	21794	8038	8108	11111	11111					-0.005101064337623029
ELFYDVLSPY	10	Unmodified	_ELFYDVLSPY_					0	0	0		ENST00000494735.1_1_7:142960606-142960717:+|nuORF;ENST00000489654.1_1_7:142960606-142961286:+|nuORF;ENST00000473649.1_1_7:142960606-142961786:+|nuORF;nc|ENSG00000197448|Q9Y2Q3-4|GSTK1;nc|ENSG00000197448|Q9Y2Q3-3|GSTK1;ENSG00000197448|ENST00000358406|GSTK1;nc|ENSG00000197448|Q9Y2Q3-2|GSTK1	ENST00000494735.1_1_7:142960606-142960717:+|nuORF	ENST00000494735.1_1_7:142960606-142960717:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	415.6431884765625	3	415.872778	1244.59651	-0.27376	-0.00011385	-1.0352	-0.00043051	-1.3089	-0.00054436	416.20622149806707	41.216	0.25372	41.99	41.794	42.047	0.77451					9	4	3	0	0	0	0.94044	1	15223	15223		3.8763	0	1	2317600			11358	9161	8039	8109	11112	11112					-0.016008446535124676
ELGAATDPLP	10	Unmodified	_ELGAATDPLP_					0	0	0			REV__ENSG00000105738|ENST00000222345|SIPA1L3	REV__ENSG00000105738|ENST00000222345|SIPA1L3	MSMS	A375_MHC_IP_R1	1	492.1818542480469	2	492.25584	982.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.988	1	24.988	24.488	25.488	0								0	0	0	0.15207	1	7206	7206		13.906	3.8321	1		+		11359	17408	8040	8110	11113	11113					0.005177574523941075
ELGDITEFI	9	Unmodified	_ELGDITEFI_					0	0	0			REV__tr|U7SU29|U7SU29_FUSNUPTSsystem,glucose-specificIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01080PE=4SV=1	REV__tr|U7SU29|U7SU29_FUSNUPTSsystem,glucose-specificIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01080PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	519.2052001953125	2	518.763497	1035.51244	-0.62298	-0.00032318	0.3067	0.00015911	-0.31628	-0.00016408	518.7633154003646	92.711	0.40592	93.45	93.24	93.646	0.73902					11	7	2	0	0	0	0.64808	1	35188	35188		11.64	2.2929	1	827130	+		11360	28529	8041	8111	11114	11114					-0.003893757504329187
ELGDITEFI	9	Unmodified	_ELGDITEFI_					0	0	0			REV__tr|U7SU29|U7SU29_FUSNUPTSsystem,glucose-specificIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01080PE=4SV=1	REV__tr|U7SU29|U7SU29_FUSNUPTSsystem,glucose-specificIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01080PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	518.763497	1035.51244	-0.37907	-0.00019665	0.30446	0.00015794	-0.07461	-3.8705E-05	518.763294028345	93.321	0.35911	93.321	93.074	93.433	0	-0.064655	-1.1282E-06	NaN	11.64	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1166300	+		11361	28529	8041	8111							-0.003893757504329187
ELGDITEFI	9	Unmodified	_ELGDITEFI_					0	0	0			REV__tr|U7SU29|U7SU29_FUSNUPTSsystem,glucose-specificIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01080PE=4SV=1	REV__tr|U7SU29|U7SU29_FUSNUPTSsystem,glucose-specificIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01080PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	518.763497	1035.51244	-0.62298	-0.00032318	0.3067	0.00015911	-0.31628	-0.00016408	518.7633154003646	92.711	0.40592	93.45	93.24	93.646	0.73902	0.064655	1.1939E-06	NaN	11.64	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	827130	+		11362	28529	8041	8111							-0.003893757504329187
ELGDVVDAFV	10	Unmodified	_ELGDVVDAFV_					0	0	0		ENSG00000128268|ENST00000341184|MGAT3	ENSG00000128268|ENST00000341184|MGAT3	ENSG00000128268|ENST00000341184|MGAT3	MSMS	A375_MHC_IP_R2	2	532.2169799804688	2	532.268947	1062.52334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.62	1	126.89	126.39	127.39	0.26593								0	0	0	0.15308	1	49562	49562		10.824	0	1				11363	4125	8042	8112	11115	11115					-0.005419733761300449
ELGELGSFAR	10	Unmodified	_ELGELGSFAR_					0	0	0			REV__ENST00000495037.1_1_3:66430689-66454678:-|nuORF	REV__ENST00000495037.1_1_3:66430689-66454678:-|nuORF	MSMS	A375_MHC_IP_R2	2	539.6875610351562	2	539.780013	1077.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.842	1	71.576	71.076	72.076	0.73421								0	0	0	0.15038	1	26861	26861		17.113	2.2746	1		+		11364	19445	8043	8113	11116	11116					0.009802510922781948
ELGEQLARL	9	Unmodified	_ELGEQLARL_					0	0	0			REV__ENSG00000179044|ENST00000314586|EXOC3L1	REV__ENSG00000179044|ENST00000314586|EXOC3L1	MULTI-SECPEP	A375_MHC_IP_R2	2	515.155517578125	2	514.790381	1027.56621	-0.85826	-0.00044182	0.2078	0.00010697	-0.65046	-0.00033485	514.7902863540678	55.661	0.86421	56.412	55.984	56.848	0.75075					39	16	4	0	0	0	0.4465	1	21079	21079		31.268	1.4278	1	6430300	+		11365	21538	8044	8114	11117	11117					0.05352841471949432
ELGGLLKY	8	Unmodified	_ELGGLLKY_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-SECPEP	A375_MHC_IP_R1	1	447.1603088378906	2	446.760561	891.506569	-0.072742	-3.2498E-05	-0.69951	-0.00031251	-0.77225	-0.00034501	446.76028018121707	74.826	0.65851	74.826	74.502	75.16	0					18	12	2	0	0	0	0.84748	1	27304	27304		21.747	4.8044	1	1207800			11366	2828	8045	8115	11118	11118					0.05647570528560664
ELGGLLKY	8	Unmodified	_ELGGLLKY_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-SECPEP	A375_MHC_IP_R2	2	447.1511535644531	2	446.760561	891.506569	-0.35509	-0.00015864	-0.046681	-2.0855E-05	-0.40177	-0.00017949	446.7605965842783	74.094	0.50724	74.832	74.553	75.06	0.73752					11	9	2	0	0	0	0.8824	1	28139	28139		16.942	4.4107	1	1703300			11367	2828	8045	8115	11119	11119					0.05647570528560664
ELGGQTYKVE	10	Unmodified	_ELGGQTYKVE_					0	0	0			REV__ENSG00000104412|ENST00000220853|EMC2	REV__ENSG00000104412|ENST00000220853|EMC2	MULTI-SECPEP	A375_MHC_IP_R2	2	562.6124877929688	2	562.285128	1122.5557	-0.67563	-0.0003799	-0.8696	-0.00048896	-1.5452	-0.00086886	562.284967606594	72.603	0.66115	73.339	73.022	73.684	0.7354					18	12	2	0	0	0	0.69172	1	27645	27645		19.257	3.4098	1	1593600	+		11368	17322	8046	8116	11120	11120					-0.0006718597312556085
ELGNHKAF	8	Unmodified	_ELGNHKAF_					0	0	0		nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP	nc|ENSG00000173786|P09543-2|CNP	nc|ENSG00000173786|P09543-2|CNP	MULTI-SECPEP	A375_MHC_IP_R1	1	457.6119079589844	2	458.237784	914.461016	-0.47482	-0.00021758	0.41195	0.00018877	-0.062872	-2.881E-05	458.23792561925086	37.969	0.30636	37.969	37.812	38.118	0					7	5	2	0	0	0	0.94479	1	12792	12792		8.5933	3.8373	1	1279000			11369	7829	8047	8117	11121	11121					0.0003634506618936939
ELGNLSAPTTF	11	Unmodified	_ELGNLSAPTTF_					0	0	0			REV__ENST00000476399.5_1_7:23776595-23810746:+|nuORF	REV__ENST00000476399.5_1_7:23776595-23810746:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	575.692138671875	2	575.292953	1148.57135	-0.082927	-4.7707E-05	-0.64883	-0.00037327	-0.73176	-0.00042098	575.2927405100155	43.179	0.45587	43.951	43.674	44.13	0.7724					14	8	2	0	0	0	0.90584	1	16106	16106		22.736	0	1	3520400	+		11370	22181	8048	8118	11122	11122					0.0030110054387932905
ELGRAERL	8	Unmodified	_ELGRAERL_					0	0	0		nc|ENSG00000276547|Q9Y5G0-2|PCDHGB5;ENSG00000276547|ENST00000617380|PCDHGB5;nc|ENSG00000253953|Q9UN71-2|PCDHGB4;ENSG00000253953|ENST00000519479|PCDHGB4	nc|ENSG00000276547|Q9Y5G0-2|PCDHGB5	nc|ENSG00000276547|Q9Y5G0-2|PCDHGB5	MULTI-MSMS	A375_MHC_IP_R1	1	472.6898498535156	2	472.269616	942.524678	-0.096359	-4.5507E-05	1.5969	0.00075416	1.5005	0.00070865	472.2694389580432	45.379	0.9623	45.379	45.081	46.043	0					27	18	2	0	0	0	0.77374	1	15775	15775		13.906	0.39817	1	2432100			11371	10022	8049	8119	11123	11123					0.051117055032818826
ELGRGYSLPS	10	Unmodified	_ELGRGYSLPS_					0	0	0		ZNF544|p.G163R|1|0.2|ENSG00000198131|chr19:58261093-58261093|G/A|missense_variant	ZNF544|p.G163R|1|0.2|ENSG00000198131|chr19:58261093-58261093|G/A|missense_variant	ZNF544|p.G163R|1|0.2|ENSG00000198131|chr19:58261093-58261093|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	539.1736450195312	2	539.780013	1077.54547	-0.70389	-0.00037995	-0.66331	-0.00035804	-1.3672	-0.00073799	539.7789388530474	41.992	0.6627	41.992	41.622	42.285	0					25	12	3	0	0	0	0.54492	1	14499	14499		24.991	2.2547	1	8564700			11372	30227	8050	8120	11124	11124					0.009802510922781948
ELGRRQWWWRR	11	Unmodified	_ELGRRQWWWRR_					0	0	0		ENST00000296754.7_2_5:96139638-96143632:-|nuORF	ENST00000296754.7_2_5:96139638-96143632:-|nuORF	ENST00000296754.7_2_5:96139638-96143632:-|nuORF	MSMS	A375_MHC_IP_R1	1	814.8756713867188	2	814.937099	1627.85965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.22	1	125.22	124.72	125.72	0								0	0	0	0.16353	1	47522	47522		0.35063	0.081612	1				11373	10510	8051	8121	11125	11125					0.07083053365340675
ELGRSQLIWGA	11	Unmodified	_ELGRSQLIWGA_					0	0	0			REV__ENSG00000266714|ENST00000645453|MYO15B	REV__ENSG00000266714|ENST00000645453|MYO15B	MSMS	A375_MHC_IP_R1	1	615.2785034179688	2	615.335487	1228.65642	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.658	1	98.658	98.158	99.158	0								0	0	0	0.16191	1	36246	36246		8.7454	0.15213	1		+		11374	22927	8052	8122	11126	11126					0.05123890800382469
ELGSECGIEF	10	Unmodified	_ELGSECGIEF_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MSMS	A375_MHC_IP_R2	2	542.1834716796875	2	542.23679	1082.45903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.92	1	60.667	60.167	61.167	0.74714								0	0	0	0.15158	1	22676	22676		14.838	2.3067	1				11375	9818	8053	8123	11127	11127					-0.07890496524601076
ELGSLKPSVDP	11	Unmodified	_ELGSLKPSVDP_					0	0	0		nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8;ENSG00000253767|ENST00000398604|PCDHGA8	nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8	nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8	MULTI-SECPEP	A375_MHC_IP_R2	2	570.7140502929688	2	571.308603	1140.60265	-0.21578	-0.00012328	-1.2493	-0.00071376	-1.4651	-0.00083703	571.3078741557252	69.804	0.55975	70.538	70.284	70.844	0.73421					15	10	2	0	0	0	0.88813	1	26456	26456		19.362	2.249	1	2267500			11376	9868	8054	8124	11128	11128					0.037976735780148374
ELGWPELQ	8	Unmodified	_ELGWPELQ_					0	0	0			REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2	REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MSMS	A375_MHC_IP_R2	2	486.1631774902344	2	486.245275	970.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.725	1	64.465	63.965	64.965	0.74022								0	0	0	0.16876	1	24163	24163		12.532	0.89125	1		+		11377	17464	8055	8125	11129	11129					-0.010422078564829462
ELHATWPTPD	10	Unmodified	_ELHATWPTPD_					0	0	0			REV__TMPRSS7|p.G664E|1|0.28|ENSG00000176040|chr3:112076911-112076911|G/A|missense_variant	REV__TMPRSS7|p.G664E|1|0.28|ENSG00000176040|chr3:112076911-112076911|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	388.9642639160156	3	389.520739	1165.54039	0.031049	1.2094E-05	-0.57595	-0.00022434	-0.5449	-0.00021225	389.520538146371	25.66	0.40641	25.66	25.46	25.866	0					11	7	2	0	0	0	0.85226	1	7468	7468		5.7834	0	1	1829800	+		11378	28133	8056	8126	11130	11130					-0.03576052770335991
ELHDREPSL	9	Unmodified	_ELHDREPSL_					0	0	0			REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6739501953125	2	548.275095	1094.53564	-0.86695	-0.00047533	-0.33738	-0.00018498	-1.2043	-0.0006603	548.2747743602549	55.461	0.50643	56.212	55.933	56.439	0.75075					17	9	2	0	0	0	0.28475	1	20929	20929		25.399	2.663	1	6564200	+		11379	17937	8057	8127	11131	11131					-0.00784936913078127
ELHDYQELDQW	11	Unmodified	_ELHDYQELDQW_					0	0	0			REV__ENSG00000182858|ENST00000330817|ALG12	REV__ENSG00000182858|ENST00000330817|ALG12	MSMS	A375_MHC_IP_R2	2	492.6429138183594	3	492.552768	1474.63647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.876	1	32.613	32.113	33.113	0.73691								0	0	0	0.16275	1	11296	11296		4.4062	1.5629	1		+		11380	21711	8058	8128	11132	11132					-0.08185949720905228
ELHFIEEVV	9	Unmodified	_ELHFIEEVV_					0	0	0			REV__SCFD2|p.P586L|1|0.47|ENSG00000184178|chr4:52907542-52907542|G/A|missense_variant	REV__SCFD2|p.P586L|1|0.47|ENSG00000184178|chr4:52907542-52907542|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	558.1885986328125	2	557.792589	1113.57063	-0.37493	-0.00020913	-2.3483	-0.0013099	-2.7233	-0.001519	557.7891180244577	49.89	2.0851	49.89	49.033	51.119	0					95	40	4	0	0	0	0.71541	1	17691	17691		11.64	0	1	4293900	+		11381	27915	8059	8129	11133	11133					0.01838305894852965
ELHKENSTIM	10	Unmodified	_ELHKENSTIM_					0	0	0			REV__ENSG00000168038|ENST00000301831|ULK4	REV__ENSG00000168038|ENST00000301831|ULK4	MSMS	A375_MHC_IP_R1	1	601.3755493164062	2	601.297713	1200.58087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.271	1	99.271	98.771	99.771	0								0	0	0	0.15435	1	36467	36467		6.7232	0.51738	1		+		11382	20822	8060	8130	11134	11134					-0.011394544422046238
ELHLNINESKL	11	Unmodified	_ELHLNINESKL_					0	0	0			REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	438.1471252441406	3	437.241865	1308.70376	-0.42914	-0.00018764	0.32789	0.00014337	-0.10125	-4.4273E-05	437.2423103108304	36.049	0.81617	36.812	36.384	37.2	0.76338					26	15	3	0	0	0	0.73459	1	13173	13173		2.084	0	1	3595100	+		11383	28328	8061	8131	11135	11135					0.06176125280694578
ELHPWTTTVNL	11	Unmodified	_ELHPWTTTVNL_					0	0	0		ENST00000379561.5_1_13:41134633-41239748:-|nuORF	ENST00000379561.5_1_13:41134633-41239748:-|nuORF	ENST00000379561.5_1_13:41134633-41239748:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	438.026123046875	3	437.562827	1309.66665	-0.54541	-0.00023865	-0.0022106	-9.6727E-07	-0.54762	-0.00023962	437.5626924563202	54.334	0.55643	55.085	54.865	55.422	0.75075					24	10	3	0	0	0	0.73332	1	20451	20451		2.6312	0	1	3386300			11384	11337	8062	8132	11136	11136					0.02420453734930561
ELHRMKSTPD	10	Unmodified	_ELHRMKSTPD_					0	0	0			REV__nc|ENSG00000116809|Q13105-3|ZBTB17	REV__nc|ENSG00000116809|Q13105-3|ZBTB17	MULTI-SECPEP	A375_MHC_IP_R1	1	405.6146545410156	3	405.204645	1212.59211	-0.27981	-0.00011338	-2.316	-0.00093844	-2.5958	-0.0010518	405.5382273256765	43.474	0.45747	43.474	43.146	43.603	0					11	8	2	0	0	0	0.9269	1	15037	15037		3.5871	0	1	1599400	+		11385	17974	8063	8133	11137	11137					-0.005686323480631472
ELHRRLEDA	9	Unmodified	_ELHRRLEDA_					0	0	0			REV__ENST00000466877.5_1_X:153195442-153197612:-|nuORF	REV__ENST00000466877.5_1_X:153195442-153197612:-|nuORF	MSMS	A375_MHC_IP_R2	2	380.261474609375	3	380.203633	1137.58907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.11	1	23.74	23.24	24.24	0.63014								0	0	0	0.14865	1	7390	7390		23.79	7.6407	1		+		11386	17201	8064	8134	11138	11138					0.025778605894402062
ELHSRRHVT	9	Unmodified	_ELHSRRHVT_					0	0	0			REV__ENSG00000146587|ENST00000396912|RBAK;REV__RBAK|p.H529Tfs*178|1|0.36|ENSG00000146587|chr7:5065038-5065038|G/-|frameshift_variant	REV__RBAK|p.H529Tfs*178|1|0.36|ENSG00000146587|chr7:5065038-5065038|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	378.5841064453125	3	378.875739	1133.60539	-0.20421	-7.7371E-05	-3.9451	-0.0014947	-4.1493	-0.0015721	378.8741570251443	19.741	0.35398	20.351	20.095	20.449	0.61029					8	6	2	0	0	0	0.77003	1	6101	6101		4.5289	0	1	371270	+		11387	19544;27871	8065	8135	11139	11139					0.043929865461677764
ELHSWTQQVEF	11	Unmodified	_ELHSWTQQVEF_					0	0	0			REV__DNAH17|p.R1494Q|1|0.21|ENSG00000187775|chr17:78507561-78507561|C/T|missense_variant	REV__DNAH17|p.R1494Q|1|0.21|ENSG00000187775|chr17:78507561-78507561|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	467.9854736328125	3	468.557853	1402.65173	0.08716	4.084E-05	0.23201	0.00010871	0.31917	0.00014955	468.5577628304817	49.44	0.40709	49.44	49.184	49.591	0					16	7	3	0	0	0	0.99883	1	17431	17431		2.6312	0.19645	1	1429100	+		11388	16008	8066	8136	11140	11140					-0.033490381330466334
ELHVFKLVALY	11	Unmodified	_ELHVFKLVALY_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MSMS	A375_MHC_IP_R2	2	666.2080688476562	2	666.389731	1330.76491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.338	1	75.075	74.575	75.575	0.73752								0	0	0	0.16179	1	28218	28218		9.3831	3.1773	1				11389	2444	8067	8137	11141	11141					0.11275682050813884
ELHWQLEIV	9	Unmodified	_ELHWQLEIV_					0	0	0			REV__nc|ENSG00000166960|Q5BJE1-3|CCDC178	REV__nc|ENSG00000166960|Q5BJE1-3|CCDC178	MULTI-SECPEP	A375_MHC_IP_R1	1	584.2135009765625	2	583.813856	1165.61316	-0.36033	-0.00021037	-0.38375	-0.00022404	-0.74408	-0.0004344	583.8132658893063	83.94	0.55639	83.94	83.685	84.241	0					23	10	3	0	0	0	0.74651	1	30785	30785		2.0598	0	1	3167100	+		11390	20722	8068	8138	11142	11142					0.036977010230884844
ELIAIKKMKRK	11	Unmodified	_ELIAIKKMKRK_					0	0	0		nc|ENSG00000112144|Q9UPZ9-2|CILK1;ENSG00000112144|ENST00000676107|CILK1	nc|ENSG00000112144|Q9UPZ9-2|CILK1	nc|ENSG00000112144|Q9UPZ9-2|CILK1	MSMS	A375_MHC_IP_R1	1	679.6572875976562	2	679.439232	1356.86391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.529	1	65.529	65.029	66.029	0								0	0	0	0.16302	1	23725	23725		2.9952	1.6657	1				11391	3053	8069	8139	11143	11143					0.1997538174402962
ELIDVSETY	9	Unmodified	_ELIDVSETY_					0	0	0			REV__ENSG00000197780|ENST00000338366|TAF13	REV__ENSG00000197780|ENST00000338366|TAF13	MSMS	A375_MHC_IP_R1	1	534.65673828125	2	534.758412	1067.50227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.34	1	102.34	101.84	102.84	0								0	0	0	0.15486	1	37609	37609		7.2892	0.56607	1		+		11392	22314	8070	8140	11144	11144					-0.028779834756505807
ELIKKEQEHIQ	11	Unmodified	_ELIKKEQEHIQ_					0	0	0			REV__nc|ENSG00000132938|Q5JR59-4|MTUS2	REV__nc|ENSG00000132938|Q5JR59-4|MTUS2	MSMS	A375_MHC_IP_R2	2	465.6923828125	3	465.592786	1393.75653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.942	1	64.682	64.182	65.182	0.74022								0	0	0	0.16224	1	24247	24247		7.0371	1.6344	1		+		11393	18693	8071	8141	11145	11145					0.07540083343519655
ELIKRLKMIK	10	Unmodified	_ELIKRLKMIK_					0	0	0			REV__ENST00000563629.1_1_16:50783909-50820919:+|nuORF	REV__ENST00000563629.1_1_16:50783909-50820919:+|nuORF	MSMS	A375_MHC_IP_R1	1	636.5591430664062	2	636.415226	1270.8159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.55	1	93.55	93.05	94.05	0								0	0	0	0.15591	1	34388	34388		1.6526	0	1		+		11394	16811	8072	8142	11146	11146					0.19132307823997508
ELILAALINFG	11	Unmodified	_ELILAALINFG_					0	0	0			REV__nc|ENSG00000288591|Q9Y2I9-3|TBC1D30	REV__nc|ENSG00000288591|Q9Y2I9-3|TBC1D30	MSMS	A375_MHC_IP_R1	1	587.34765625	2	587.347532	1172.68051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.67	1	121.67	121.17	122.17	0								0	0	0	0.16216	1	45202	45202		9.3831	3.1773	1		+		11395	17674	8073	8143	11147	11147					0.10107731234029416
ELILPHYQL	9	Unmodified	_ELILPHYQL_					0	0	0			REV__nc|ENSG00000165863|Q8WW14-2|SPMIP5	REV__nc|ENSG00000165863|Q8WW14-2|SPMIP5	MULTI-MSMS	A375_MHC_IP_R1	1	563.7186889648438	2	563.318774	1124.623	-0.66292	-0.00037344	0.413	0.00023265	-0.24992	-0.00014079	563.3189806544161	131.3	0.65773	131.3	130.92	131.58	0					25	12	3	0	0	0	0.034481	1	50628	50628		71.134	5.8986	1	58536000	+		11396	20631	8074	8144	11148	11148					0.06566889028476908
ELILPHYQL	9	Unmodified	_ELILPHYQL_					0	0	0			REV__nc|ENSG00000165863|Q8WW14-2|SPMIP5	REV__nc|ENSG00000165863|Q8WW14-2|SPMIP5	MULTI-MSMS	A375_MHC_IP_R2	2	563.7188110351562	2	563.318774	1124.623	-0.51784	-0.00029171	-0.079988	-4.5059E-05	-0.59783	-0.00033677	563.3186485649215	131.12	0.61012	131.34	130.91	131.52	0.2142					22	11	4	0	0	0	0.034481	1	51567	51567		71.134	7.1731	1	52729000	+		11397	20631	8074	8144	11149	11149					0.06566889028476908
ELILPHYQL	9	Unmodified	_ELILPHYQL_					0	0	0			REV__nc|ENSG00000165863|Q8WW14-2|SPMIP5	REV__nc|ENSG00000165863|Q8WW14-2|SPMIP5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	563.318774	1124.623	-0.66292	-0.00037344	0.413	0.00023265	-0.24992	-0.00014079	563.3189806544161	131.3	0.65773	131.3	130.92	131.58	0	-0.018284	0.0002857	NaN	71.134	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58536000	+		11398	20631	8074	8144							0.06566889028476908
ELILPHYQL	9	Unmodified	_ELILPHYQL_					0	0	0			REV__nc|ENSG00000165863|Q8WW14-2|SPMIP5	REV__nc|ENSG00000165863|Q8WW14-2|SPMIP5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	563.318774	1124.623	-0.51784	-0.00029171	-0.079988	-4.5059E-05	-0.59783	-0.00033677	563.3186485649215	131.12	0.61012	131.34	130.91	131.52	0.2142	0.018284	-0.00026972	NaN	71.134	22	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52729000	+		11399	20631	8074	8144							0.06566889028476908
ELINIPSPVGY	11	Unmodified	_ELINIPSPVGY_					0	0	0		tr|U7SWE4|U7SWE4_FUSNUAminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01001PE=3SV=1	tr|U7SWE4|U7SWE4_FUSNUAminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01001PE=3SV=1	tr|U7SWE4|U7SWE4_FUSNUAminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01001PE=3SV=1	MSMS	A375_MHC_IP_R2	2	601.4088134765625	2	601.326796	1200.63904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.422	1	60.169	59.669	60.669	0.74714								0	0	0	0.16124	1	22489	22489		12.241	0.74595	1				11400	29805	8075	8145	11150	11150					0.04674550474737771
ELIQRNHNV	9	Unmodified	_ELIQRNHNV_					0	0	0		nc|ENSG00000271271|P0DTE5-2|UGT2A2;ENSG00000271271|ENST00000604629|UGT2A2;nc|ENSG00000173610|P0DTE4-4|UGT2A1	nc|ENSG00000271271|P0DTE5-2|UGT2A2	nc|ENSG00000271271|P0DTE5-2|UGT2A2	MULTI-SECPEP	A375_MHC_IP_R2	2	374.6204833984375	3	374.871995	1121.59415	0.41078	0.00015399	1.7922	0.00067185	2.203	0.00082584	374.87257387457754	43.028	0.70841	43.8	43.268	43.977	0.7724					22	13	3	0	0	0	0.74412	1	15965	15965		6.6304	2.1015	1	1181500			11401	9984	8076	8146	11151	11151					0.038221644520263
ELISDIKTGY	10	Unmodified	_ELISDIKTGY_					0	0	0			REV__ENSG00000105926|ENST00000222644|PALS2	REV__ENSG00000105926|ENST00000222644|PALS2	MULTI-MSMS	A375_MHC_IP_R1	1	380.12445068359375	3	380.204528	1137.59175	0.026653	1.0134E-05	-0.22961	-8.73E-05	-0.20296	-7.7166E-05	380.20435089066984	26.088	0.70889	26.088	25.866	26.575	0					32	13	3	0	0	0	0.7154	1	7782	7782		5.4027	0.10583	1	16671000	+		11402	17418	8077	8147	11152	11152					0.028462712037253368
ELISNKLPSF	10	Unmodified	_ELISNKLPSF_					0	0	0			REV__ENST00000561208.5_1_15:37391739-37391829:-|nuORF	REV__ENST00000561208.5_1_15:37391739-37391829:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	383.9189758300781	3	383.216768	1146.62847	-0.10401	-3.9859E-05	1.0454	0.00040063	0.94142	0.00036077	383.21706907935277	41.858	1.6292	42.633	41.692	43.321	0.77451					54	31	3	0	0	0	0.71361	1	15335	15335		3.3196	0.68841	1	6013200	+		11403	26175	8078	8148	11153	11153					0.06102567820266813
ELITDTRFF	9	Unmodified	_ELITDTRFF_					0	0	0			REV__ANK3|p.G2104R|1|0.25|ENSG00000151150|chr10:60074571-60074571|C/T|missense_variant	REV__ANK3|p.G2104R|1|0.25|ENSG00000151150|chr10:60074571-60074571|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	571.114990234375	2	571.298039	1140.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.15	1	107.15	106.65	107.65	0								0	0	0	0.1521	1	39321	39321		18.146	0	1		+		11404	15403	8079	8149	11154	11154					0.016857082691331016
ELKAKYYRE	9	Unmodified	_ELKAKYYRE_					0	0	0		GBP5|p.R450Q|1|0.37|ENSG00000154451|chr1:89263749-89263749|C/T|missense_variant;ENST00000481145.1_1_1:89729385-89732242:-|nuORF;nc|ENSG00000154451|Q96PP8-2|GBP5;ENSG00000154451|ENST00000370459|GBP5	GBP5|p.R450Q|1|0.37|ENSG00000154451|chr1:89263749-89263749|C/T|missense_variant	GBP5|p.R450Q|1|0.37|ENSG00000154451|chr1:89263749-89263749|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	600.6813354492188	2	600.324588	1198.63462	-0.37635	-0.00022593	-0.11358	-6.8186E-05	-0.48993	-0.00029412	600.3244488134828	73.31	0.70922	73.31	73.031	73.74	0					23	13	3	0	0	0	0.65527	1	26692	26692		12.241	0.74595	1	4362700			11405	6089	8080	8150	11155	11155					0.043250860517900946
ELKAMEKQRL	10	Unmodified	_ELKAMEKQRL_					0	0	0			REV__ENSG00000170788|ENST00000372202|DYDC1	REV__ENSG00000170788|ENST00000372202|DYDC1	MULTI-MSMS	A375_MHC_IP_R2	2	623.7551879882812	2	623.352822	1244.69109	-0.7884	-0.00049145	0.24659	0.00015371	-0.54181	-0.00033774	623.352214908433	129.96	2.2771	130.18	128.63	130.91	0.2142					96	44	3	0	0	0	0.7116	1	50878	50878		7.1017	0.89594	1	16128000	+		11406	21018	8081	8151	11156	11156					0.07853390616833167
ELKANTSF	8	Unmodified	_ELKANTSF_					0	0	0		tr|U7SQV6|U7SQV6_FUSNULemAproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01597PE=3SV=1	tr|U7SQV6|U7SQV6_FUSNULemAproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01597PE=3SV=1	tr|U7SQV6|U7SQV6_FUSNULemAproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01597PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	455.6370849609375	2	455.23745	908.460347	-0.29658	-0.00013502	-0.27973	-0.00012734	-0.57632	-0.00026236	455.2375543315755	27.979	0.30529	28.658	28.502	28.808	0.67857					9	5	2	0	0	0	0.69583	1	9650	9650		36.044	0	1	2059900			11407	29601	8082	8152	11157	11157					0.0024550562648073537
ELKEEFTRIL	10	Unmodified	_ELKEEFTRIL_					0	0	0		ENSG00000122735|ENST00000242317|DNAI1;nc|ENSG00000122735|Q9UI46-2|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	MSMS	A375_MHC_IP_R2	2	639.3925170898438	2	639.358628	1276.7027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.84	1	125.17	124.67	125.67	0.32969								0	0	0	0.15287	1	48424	48424		8.7454	0	1				11408	3806	8083	8153	11158	11158					0.07541910911800187
ELKELRHKE	9	Unmodified	_ELKELRHKE_					0	0	0		ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MULTI-SECPEP	A375_MHC_IP_R1	1	393.9519348144531	3	394.559417	1180.65642	-0.015859	-6.2574E-06	0.4126	0.0001628	0.39674	0.00015654	394.55990773608556	28.754	0.4549	28.754	28.541	28.996	0					12	8	2	0	0	0	0.72623	1	8831	8831		13.615	0	1	2058100			11409	1572	8084	8154	11159	11159					0.0733189080037846
ELKFDNNKY	9	Unmodified	_ELKFDNNKY_					0	0	0			REV__nc|ENSG00000110076|Q9P2S2-2|NRXN2	REV__nc|ENSG00000110076|Q9P2S2-2|NRXN2	MULTI-SECPEP	A375_MHC_IP_R1	1	390.9413146972656	3	390.864506	1169.57169	-0.038493	-1.5045E-05	0.29303	0.00011453	0.25454	9.9489E-05	391.19883187115227	28.85	0.81179	28.85	28.491	29.302	0					35	15	4	0	0	0	0.74875	1	9091	9091		15.248	8.6181	1	1947900	+		11410	17615	8085	8155	11160	11160					-0.00631479736239271
ELKHRSSKKDL	11	Unmodified	_ELKHRSSKKDL_					0	0	0		ENSG00000169762|ENST00000405303|TAPT1	ENSG00000169762|ENST00000405303|TAPT1	ENSG00000169762|ENST00000405303|TAPT1	MULTI-MSMS	A375_MHC_IP_R1	1	671.2850341796875	2	670.885875	1339.7572	-0.84852	-0.00056926	-0.55046	-0.0003693	-1.399	-0.00093856	671.3872857307525	131.53	0.85727	131.53	131.13	131.98	0					27	16	2	0	0	0	0.73715	1	50753	50753		2.086	0.89267	1	3848100			11411	7437	8086	8156	11161	11161					0.10090922783251699
ELKHRSSKKDL	11	Unmodified	_ELKHRSSKKDL_					0	0	0		ENSG00000169762|ENST00000405303|TAPT1	ENSG00000169762|ENST00000405303|TAPT1	ENSG00000169762|ENST00000405303|TAPT1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	670.885875	1339.7572	-0.84852	-0.00056926	-0.55046	-0.0003693	-1.399	-0.00093856	671.3872857307525	131.53	0.85727	131.53	131.13	131.98	0	-0.12222	9.0753E-05	NaN	2.086	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3848100			11412	7437	8086	8156							0.10090922783251699
ELKHRSSKKDL	11	Unmodified	_ELKHRSSKKDL_					0	0	0		ENSG00000169762|ENST00000405303|TAPT1	ENSG00000169762|ENST00000405303|TAPT1	ENSG00000169762|ENST00000405303|TAPT1	MULTI-MATCH	A375_MHC_IP_R2	2		2	670.885875	1339.7572	-0.73532	-0.00049331	-0.69069	-0.00046337	-1.426	-0.00095669	670.8851126114985	131.58	0.71301	131.77	131.34	132.05	0.18953	0.12222	-9.7395E-05	NaN	2.086	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3641700			11413	7437	8086	8156							0.10090922783251699
ELKKAGRRYG	10	Unmodified	_ELKKAGRRYG_					0	0	0			REV__nc|ENSG00000012048|P38398-8|BRCA1	REV__nc|ENSG00000012048|P38398-8|BRCA1	MULTI-MSMS	A375_MHC_IP_R1	1	589.742919921875	2	589.343646	1176.67274	-0.42685	-0.00025156	-0.82974	-0.000489	-1.2566	-0.00074056	589.3430052761335	129.12	2.9462	129.12	128.38	131.33	0					231	57	6	0	0	0	0.72014	1	49823	49823		3.2813	0.28607	1	1725099999.9999998	+		11414	16218	8087	8157	11162	11162					0.09147016757151505
ELKKAPVRTRA	11	Unmodified	_ELKKAPVRTRA_					0	0	0			REV__ENSG00000170876|ENST00000306077|TMEM43	REV__ENSG00000170876|ENST00000306077|TMEM43	MULTI-SECPEP	A375_MHC_IP_R2	2	635.2925415039062	2	634.893503	1267.77245	-0.63727	-0.0004046	-0.9978	-0.0006335	-1.6351	-0.0010381	634.8927113790422	136.06	0.76636	136.17	135.99	136.76	0.11134					30	14	3	0	0	0	0.99791	1	53462	53462		4.897	3.7037	1	12625000	+		11415	21027	8088	8158	11163	11163					0.14927834371087556
ELKKERVLRKE	11	Unmodified	_ELKKERVLRKE_					0	0	0		ERC2|p.K307Nfs*38|1|0.32|ENSG00000187672|chr3:56296178-56296178|A/-|frameshift_variant;ERC2|p.F618Sfs*8|1|0.42|ENSG00000187672|chr3:56010518-56010518|G/-|frameshift_variant;ENSG00000187672|ENST00000288221|ERC2	ERC2|p.K307Nfs*38|1|0.32|ENSG00000187672|chr3:56296178-56296178|A/-|frameshift_variant	ERC2|p.K307Nfs*38|1|0.32|ENSG00000187672|chr3:56296178-56296178|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	714.1546020507812	2	714.438275	1426.862	-1.1348	-0.00081078	-4.1283	-0.0029494	-5.2632	-0.0037602	714.9363644875033	123.86	0.15289	123.86	123.74	123.89	0					4	2	2	0	0	0	0.99738	1	46377	46377		2.7352	0.23671	1	10726000			11416	8846	8089	8159	11164	11164					0.1656404425978053
ELKKFKLKLL	10	Unmodified	_ELKKFKLKLL_					0	0	0		nc|ENSG00000103490|Q9ULZ3-2|PYCARD;ENSG00000103490|ENST00000247470|PYCARD	nc|ENSG00000103490|Q9ULZ3-2|PYCARD	nc|ENSG00000103490|Q9ULZ3-2|PYCARD	MSMS	A375_MHC_IP_R1	1	630.8352661132812	2	630.426116	1258.83768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.2	1	119.2	118.7	119.7	0								0	0	0	0.15591	1	44014	44014		1.6526	0.17072	1				11417	2454	8090	8160	11165	11165					0.21861435844243715
ELKKFKLKLL	10	Unmodified	_ELKKFKLKLL_					0	0	0		nc|ENSG00000103490|Q9ULZ3-2|PYCARD;ENSG00000103490|ENST00000247470|PYCARD	nc|ENSG00000103490|Q9ULZ3-2|PYCARD	nc|ENSG00000103490|Q9ULZ3-2|PYCARD	MSMS	A375_MHC_IP_R2	2	630.4706420898438	2	630.426116	1258.83768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.122	1	84.862	84.362	85.362	0.73962								0	0	0	0.15591	1	31975	31975		1.6526	0	1				11418	2454	8090	8160	11166	11166					0.21861435844243715
ELKKKKIARKI	11	Unmodified	_ELKKKKIARKI_					0	0	0		MER30_dup2921|chr12:21469267-21469488:+|2.160023752874194|0.481974385668547|2.16|409.0|16|3|anti-sense	MER30_dup2921|chr12:21469267-21469488:+|2.160023752874194|0.481974385668547|2.16|409.0|16|3|anti-sense	MER30_dup2921|chr12:21469267-21469488:+|2.160023752874194|0.481974385668547|2.16|409.0|16|3|anti-sense	MSMS	A375_MHC_IP_R2	2	452.3323974609375	3	452.313406	1353.91839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.82	1	131.03	130.53	131.53	0.2142								0	0	0	0.16358	1	51459	51459		0.073264	0.073264	1				11419	14374	8091	8161	11167	11167					0.2555871688712159
ELKKKKRF	8	Unmodified	_ELKKKKRF_					0	0	0			REV__CFAP58|p.E219K|1|0.58|ENSG00000120051|chr10:104365871-104365871|G/A|missense_variant	REV__CFAP58|p.E219K|1|0.58|ENSG00000120051|chr10:104365871-104365871|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	359.9290771484375	3	359.569476	1075.6866	0.17167	6.1729E-05	-0.064724	-2.3273E-05	0.10695	3.8456E-05	359.56912671936027	33.61	0.35461	33.61	33.393	33.748	0					16	6	3	0	0	0	0.7769	1	10935	10935		6.2058	1.3088	1	1311100	+		11420	15650	8092	8162	11168	11168					0.15178294256224945
ELKKLRNNIDK	11	Unmodified	_ELKKLRNNIDK_					0	0	0			REV__tr|U7SHA7|U7SHA7_FUSNURibosome-recyclingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=frrPE=3SV=1	REV__tr|U7SHA7|U7SHA7_FUSNURibosome-recyclingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=frrPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	458.0081481933594	3	457.608659	1369.80415	-0.48922	-0.00022387	-0.59521	-0.00027237	-1.0844	-0.00049624	457.60830094972243	132.4	2.489	132.4	131.83	134.32	0					165	48	5	0	0	0	0.73828	1	51174	51174		1.0136	0	1	169830000	+		11421	28204	8093	8163	11169	11169					0.1340378233435331
ELKKLYGKY	9	Unmodified	_ELKKLYGKY_					0	0	0			REV__tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	REV__tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	MSMS	A375_MHC_IP_R2	2	381.2850646972656	3	381.225375	1140.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.387	1	37.158	36.658	37.658	0.7709								0	0	0	0.15142	1	13261	13261		13.615	0.74226	1		+		11422	28523	8094	8164	11170	11170					0.08959462062580315
ELKKPQELK	9	Unmodified	_ELKKPQELK_					0	0	0		nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	MULTI-SECPEP	A375_MHC_IP_R1	1	372.2768249511719	3	371.560646	1111.66011	0.29322	0.00010895	1.4716	0.00054679	1.7648	0.00065574	371.56108680507526	36.109	0.40683	36.109	35.982	36.389	0					11	7	2	0	0	0	0.80713	1	12111	12111		2.086	0.60411	1	923580			11423	14944	8095	8165	11171	11171					0.108745605742115
ELKKPQELK	9	Unmodified	_ELKKPQELK_					0	0	0		nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	MULTI-MATCH	A375_MHC_IP_R2	2		3	371.560646	1111.66011	0.22291	8.2823E-05	1.3092	0.00048645	1.5321	0.00056927	371.56106729583496	34.954	0.30324	35.718	35.525	35.829	0.76338	-0.19536	-7.2548E-05	NaN	2.086	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1566800			11424	14944	8095	8165							0.108745605742115
ELKKQLDFKKL	11	Unmodified	_ELKKQLDFKKL_					0	0	0		PCDHB13|p.E311K|1|0.35|ENSG00000187372|chr5:141215054-141215054|G/A|missense_variant	PCDHB13|p.E311K|1|0.35|ENSG00000187372|chr5:141215054-141215054|G/A|missense_variant	PCDHB13|p.E311K|1|0.35|ENSG00000187372|chr5:141215054-141215054|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	464.3170166015625	3	463.953655	1388.83914	-0.70099	-0.00032522	-0.016841	-7.8134E-06	-0.71783	-0.00033304	463.95372936069975	62.413	0.60978	63.155	62.774	63.383	0.74263					27	11	4	0	0	0	0.72773	1	23688	23688		11.065	1.5352	1	5966300			11425	15131	8096	8166	11172	11172					0.16027025142329876
ELKKVQQKYLR	11	Unmodified	_ELKKVQQKYLR_					0	0	0			REV__nc|ENSG00000114107|Q8NHQ1-2|CEP70	REV__nc|ENSG00000114107|Q8NHQ1-2|CEP70	MSMS	A375_MHC_IP_R2	2	716.7970581054688	2	716.935368	1431.85618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.16	1	134.31	133.81	134.81	0.14629								0	0	0	0.16302	1	52778	52778		2.9952	0	1		+		11426	17812	8097	8167	11173	11173					0.1575294574813597
ELKKVRSKV	9	Unmodified	_ELKKVRSKV_					0	0	0			REV__FILIP1|p.E479K|1|0.09|ENSG00000118407|chr6:75314397-75314397|C/T|missense_variant	REV__FILIP1|p.E479K|1|0.09|ENSG00000118407|chr6:75314397-75314397|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	362.87164306640625	3	362.904636	1085.69208	-0.0073775	-2.6773E-06	-2.4581	-0.00089204	-2.4654	-0.00089472	362.903635354116	19.254	0.24938	19.254	19.221	19.471	0					12	6	2	0	0	0	0.74597	1	4693	4693		12.175	1.3752	1	23167000	+		11427	26632	8098	8168	11174	11174					0.15265973048053638
ELKLIKFKLLL	11	Unmodified	_ELKLIKFKLLL_					0	0	0			REV__tr|U7SGP7|U7SGP7_FUSNUHolin-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02274PE=4SV=1	REV__tr|U7SGP7|U7SGP7_FUSNUHolin-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02274PE=4SV=1	MSMS	A375_MHC_IP_R2	2	679.493408203125	2	679.462699	1356.91084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.74	1	125.07	124.57	125.57	0.32969								0	0	0	0.16353	1	48343	48343		0.35063	0.043601	1		+		11428	28193	8099	8169	11175	11175					0.24666564566837224
ELKLKFNLF	9	Unmodified	_ELKLKFNLF_					0	0	0		ENST00000565884.5_1_16:20817227-20817407:-|nuORF	ENST00000565884.5_1_16:20817227-20817407:-|nuORF	ENST00000565884.5_1_16:20817227-20817407:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	576.2427368164062	2	576.344792	1150.67503	0.0028125	1.621E-06	-0.57603	-0.00033199	-0.57322	-0.00033037	576.3444386459716	127.95	2.3853	127.95	127.01	129.4	0					108	46	4	0	0	0	0.76827	1	49412	49412		3.5965	0.31518	1	271490000			11429	13554	8100	8170	11176	11176					0.10572052442216773
ELKNMVPLL	9	Unmodified	_ELKNMVPLL_					0	0	0		ENST00000369722.7_1_1:111998815-111999270:+|nuORF	ENST00000369722.7_1_1:111998815-111999270:+|nuORF	ENST00000369722.7_1_1:111998815-111999270:+|nuORF	MSMS	A375_MHC_IP_R1	1	528.8408813476562	2	528.809728	1055.6049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.82	1	84.82	84.32	85.32	0								0	0	0	0.1499	1	31077	31077		21.747	1.293	1				11430	11138	8101	8171	11177	11177					0.07932430782125266
ELKNYSEGGP	10	Unmodified	_ELKNYSEGGP_					0	0	0		RGPD3|p.E755K|5|0.16|ENSG00000153165|chr2:106433228-106433228|C/T|missense_variant	RGPD3|p.E755K|5|0.16|ENSG00000153165|chr2:106433228-106433228|C/T|missense_variant	RGPD3|p.E755K|5|0.16|ENSG00000153165|chr2:106433228-106433228|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	547.683349609375	2	547.261653	1092.50875	-0.50541	-0.00027659	0.92201	0.00050458	0.4166	0.00022799	547.262240106979	46.169	0.70651	46.169	45.839	46.545	0					14	13	2	0	0	0	0.68638	1	16159	16159		14.405	0.49933	1	851130			11431	29069	8102	8172	11178	11178					-0.03380045524272646
ELKPKVKKLKY	11	Unmodified	_ELKPKVKKLKY_					0	0	0		nc|ENSG00000196588|Q969V6|MRTFA;ENSG00000196588|ENST00000355630|MRTFA	nc|ENSG00000196588|Q969V6|MRTFA	nc|ENSG00000196588|Q969V6|MRTFA	MSMS	A375_MHC_IP_R1	1	687.671875	2	687.44758	1372.88061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.3	1	102.3	101.8	102.8	0								0	0	0	0.16297	1	37597	37597		3.2813	1.6287	1				11432	9062	8103	8173	11179	11179					0.20908205901650945
ELKPSFHDPQ	10	Unmodified	_ELKPSFHDPQ_					0	0	0		nc|ENSG00000142405|P59046-4|NLRP12;nc|ENSG00000142405|P59046-3|NLRP12;nc|ENSG00000142405|P59046-6|NLRP12;nc|ENSG00000142405|P59046-2|NLRP12;ENSG00000142405|ENST00000324134|NLRP12;nc|ENSG00000142405|P59046-7|NLRP12	nc|ENSG00000142405|P59046-4|NLRP12	nc|ENSG00000142405|P59046-4|NLRP12	MULTI-MSMS	A375_MHC_IP_R1	1	598.2793579101562	2	599.29857	1196.58259	-0.24812	-0.0001487	0.83869	0.00050262	0.59057	0.00035393	599.299115470313	82.094	1.0652	82.094	81.707	82.772	0					37	19	3	0	0	0	0.66308	1	29974	29974		16.149	3.9084	1	13432000			11433	5306	8104	8174	11180	11180					-0.007840773619591346
ELKQDFSIY	9	Unmodified	_ELKQDFSIY_					0	0	0		tr|U7SED1|U7SED1_FUSNUTranscriptionantiterminationproteinNusBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusBPE=3SV=1	tr|U7SED1|U7SED1_FUSNUTranscriptionantiterminationproteinNusBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusBPE=3SV=1	tr|U7SED1|U7SED1_FUSNUTranscriptionantiterminationproteinNusBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusBPE=3SV=1	MSMS	A375_MHC_IP_R1	1	571.91796875	2	571.790047	1141.56554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.086	1	98.086	97.586	98.586	0								0	0	0	0.15283	1	36037	36037		16.942	3.4344	1				11434	29381	8105	8175	11181	11181					0.00042002032250820776
ELKQEAFFL	9	Unmodified	_ELKQEAFFL_					0	0	0			REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	374.9446716308594	3	375.53773	1123.59136	-0.082905	-3.1134E-05	0.13458	5.054E-05	0.051675	1.9406E-05	375.53785944570285	38.577	0.45811	39.351	39.098	39.556	0.77451					13	8	2	0	0	0	0.67483	1	14183	14183		14.405	14.405	1	1585800	+		11435	28309	8106	8176	11182	11182					0.03450896274512161
ELKQFGVAP	9	Unmodified	_ELKQFGVAP_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MSMS	A375_MHC_IP_R2	2	494.9215087890625	2	494.776742	987.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.341	1	25.985	25.485	26.485	0.64368								0	0	0	0.14677	1	8457	8457		26.884	0	1				11436	6654	8107	8177	11183	11183					0.04466357931573839
ELKQLRASY	9	Unmodified	_ELKQLRASY_					0	0	0		ENSG00000176896|ENST00000696128|TCEANC;nc|ENSG00000176896|Q8N8B7-2|TCEANC	ENSG00000176896|ENST00000696128|TCEANC	ENSG00000176896|ENST00000696128|TCEANC	MSMS	A375_MHC_IP_R2	2	554.386962890625	2	554.31148	1106.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.2	1	101.96	101.46	102.46	0.76428								0	0	0	0.15486	1	38361	38361		12.532	5.2423	1				11437	8041	8108	8178	11184	11184					0.05936816880330298
ELKQLRASY	9	Unmodified	_ELKQLRASY_					0	0	0		ENSG00000176896|ENST00000696128|TCEANC;nc|ENSG00000176896|Q8N8B7-2|TCEANC	ENSG00000176896|ENST00000696128|TCEANC	ENSG00000176896|ENST00000696128|TCEANC	MULTI-SECPEP	A375_MHC_IP_R2	2	553.5676879882812	2	554.31148	1106.60841	-0.97244	-0.00053903	-0.84143	-0.00046641	-1.8139	-0.0010054	554.3105937943916	34.687	0.50763	35.45	35.119	35.627	0.76338					10	9	2	0	0	0	0.76452	1	12528	12528		12.532	0	1	1823700			11438	8041	8108	8178	11185	11185					0.05936816880330298
ELKQMAYIY	9	Unmodified	_ELKQMAYIY_					0	0	0		ENST00000476047.1_1_3:76483919-76484456:+|nuORF	ENST00000476047.1_1_3:76483919-76484456:+|nuORF	ENST00000476047.1_1_3:76483919-76484456:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	579.1007080078125	2	579.796817	1157.57908	-0.16817	-9.7502E-05	3.3946	0.0019682	3.2264	0.0018707	580.3004742233659	109.45	0.30268	110.2	110.03	110.33	0.74684					6	5	2	0	0	0	0.78798	1	41298	41298		1.6526	0	1	802420			11439	12429	8109	8179	11186	11186					0.006595365398425201
ELKQQKAELRK	11	Unmodified	_ELKQQKAELRK_					0	0	0			REV__ENSG00000205670|ENST00000399292|SMIM11	REV__ENSG00000205670|ENST00000399292|SMIM11	MULTI-MSMS	A375_MHC_IP_R1	1	457.6823425292969	3	457.608659	1369.80415	-0.52558	-0.00024051	0.80725	0.0003694	0.28167	0.00012889	457.60920310816584	134.95	1.17	134.95	134.73	135.9	0					38	22	2	0	0	0	0.73828	1	52212	52212		1.0136	0	1	1619500	+		11440	22577	8110	8180	11187	11187					0.1340378233435331
ELKQRKFKTR	10	Unmodified	_ELKQRKFKTR_					0	0	0			REV__ENSG00000170370|ENST00000553456|EMX2	REV__ENSG00000170370|ENST00000553456|EMX2	MSMS	A375_MHC_IP_R2	2	667.3259887695312	2	667.406778	1332.799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.78	1	149.8	149.3	150.3	0.01825								0	0	0	0.15596	1	58118	58118		1.4819	0	1		+		11441	20986	8111	8181	11188	11188					0.14591523262402006
ELKQYYEQYYY	11	Unmodified	_ELKQYYEQYYY_					0	0	0			REV__ENSG00000229474|ENST00000682850|PATL2	REV__ENSG00000229474|ENST00000682850|PATL2	MSMS	A375_MHC_IP_R1	1	530.677001953125	3	530.576802	1588.70858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.315	1	70.315	69.815	70.815	0								0	0	0	0.16297	1	25530	25530		1.3296	0.63198	1		+		11442	22738	8112	8182	11189	11189					-0.06223035367156626
ELKQYYEQYYY	11	Unmodified	_ELKQYYEQYYY_					0	0	0			REV__ENSG00000229474|ENST00000682850|PATL2	REV__ENSG00000229474|ENST00000682850|PATL2	MSMS	A375_MHC_IP_R2	2	530.6765747070312	3	530.576802	1588.70858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.027	1	69.762	69.262	70.262	0.73511								0	0	0	0.16297	1	26155	26155		1.3296	0.82369	1		+		11443	22738	8112	8182	11190	11190					-0.06223035367156626
ELKQYYEQYYY	11	Unmodified	_ELKQYYEQYYY_					0	0	0			REV__ENSG00000229474|ENST00000682850|PATL2	REV__ENSG00000229474|ENST00000682850|PATL2	MSMS	A375_MHC_IP_R2	2	530.6649169921875	3	530.576802	1588.70858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.666	1	72.401	71.901	72.901	0.73421								0	0	0	0.16334	1	27189	27189		0.45452	0.35968	1		+		11444	22738	8112	8182	11191	11191					-0.06223035367156626
ELKRGPGL	8	Unmodified	_ELKRGPGL_					0	0	0		nc|ENSG00000005238|Q7L5A3-2|ATOSB;ENSG00000005238|ENST00000322813|ATOSB	nc|ENSG00000005238|Q7L5A3-2|ATOSB	nc|ENSG00000005238|Q7L5A3-2|ATOSB	MULTI-SECPEP	A375_MHC_IP_R1	1	434.6742248535156	2	435.263802	868.513051	0.020344	8.8548E-06	-0.15804	-6.8789E-05	-0.1377	-5.9934E-05	435.2635915114058	42.714	0.25285	42.714	42.537	42.79	0					8	4	2	0	0	0	0.8824	1	14812	14812		30.225	15.387	1	1410900			11445	889	8113	8183	11192	11192					0.07353508479968696
ELKRIKRKLRE	11	Unmodified	_ELKRIKRKLRE_					0	0	0			REV__ENSG00000185608|ENST00000333130|MRPL40	REV__ENSG00000185608|ENST00000333130|MRPL40	MULTI-SECPEP	A375_MHC_IP_R1	1	734.8584594726562	2	734.975359	1467.93616	-0.46719	-0.00034337	1.1872	0.00087256	0.72001	0.00052919	735.4790648346175	128.51	0.25179	128.51	128.38	128.63	0					6	4	2	0	0	0	1.0003	1	49403	49403		2.2828	0.95324	1	2894100	+		11446	21902	8114	8184	11193	11193					0.22091432141996847
ELKRKPSPV	9	Unmodified	_ELKRKPSPV_					0	0	0			REV__ENST00000590442.1_1_18:56648660-56651695:+|nuORF	REV__ENST00000590442.1_1_18:56648660-56651695:+|nuORF	MSMS	A375_MHC_IP_R2	2	527.341064453125	2	527.324391	1052.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.043	1	40.818	40.318	41.318	0.77451								0	0	0	0.15486	1	14813	14813		7.2892	3.3448	1		+		11447	16639	8115	8185	11194	11194					0.11001711122617053
ELKRKQEE	8	Unmodified	_ELKRKQEE_					0	0	0		tr|U7T554|U7T554_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00315PE=3SV=1	tr|U7T554|U7T554_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00315PE=3SV=1	tr|U7T554|U7T554_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00315PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	530.6926879882812	2	530.293288	1058.57202	-0.5691	-0.00030179	-0.064045	-3.3963E-05	-0.63314	-0.00033575	530.2929856567305	125.74	2.0721	126.04	125.67	127.74	0.2951					68	40	2	0	0	0	0.77602	1	49420	49420		9.3831	0	1	10293000			11448	30011	8116	8186	11195	11195					0.045079399836367884
ELKRNKIYE	9	Unmodified	_ELKRNKIYE_					0	0	0			REV__ENST00000480362.5_1_13:115047204-115067220:+|nuORF	REV__ENST00000480362.5_1_13:115047204-115067220:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	398.6276550292969	3	398.227667	1191.66117	-0.34132	-0.00013592	1.3249	0.00052762	0.98361	0.0003917	398.2275691311573	24.333	0.60599	24.333	24.092	24.698	0					20	11	3	0	0	0	0.77003	1	6909	6909		4.5289	2.4429	1	6912300	+		11449	20902	8117	8187	11196	11196					0.07300774943132637
ELKRPQASA	9	Unmodified	_ELKRPQASA_					0	0	0		ENST00000254323.6_1_19:13942265-13942868:+|nuORF	ENST00000254323.6_1_19:13942265-13942868:+|nuORF	ENST00000254323.6_1_19:13942265-13942868:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	500.6823425292969	2	500.282723	998.550893	-0.5293	-0.0002648	0.35448	0.00017734	-0.17481	-8.7455E-05	500.2825497094055	126.01	1.5654	126.31	125.62	127.19	0.2951					73	30	4	0	0	0	0.64136	1	49410	49410		12.241	0.60036	1	23081000			11450	10225	8118	8188	11197	11197					0.051559746747557256
ELKRSWRW	8	Unmodified	_ELKRSWRW_					0	0	0		chr11:9748056-9749091|122|21.89|0.87|4.65|+|0|SWAP70,None|1	chr11:9748056-9749091|122|21.89|0.87|4.65|+|0|SWAP70,None|1	chr11:9748056-9749091|122|21.89|0.87|4.65|+|0|SWAP70,None|1	MULTI-MSMS	A375_MHC_IP_R1	1	387.9400329589844	3	387.548964	1159.62506	-0.039907	-1.5466E-05	0.52489	0.00020342	0.48498	0.00018795	387.54919223167224	23.863	0.25367	23.863	23.737	23.991	0					6	4	2	0	0	0	0.74466	1	6629	6629		17.113	0	1	4146000			11451	406	8119	8189	11198	11198					0.05163362556959328
ELKSLKNEI	9	Unmodified	_ELKSLKNEI_					0	0	0		ENSG00000179542|ENST00000356928|SLITRK4	ENSG00000179542|ENST00000356928|SLITRK4	ENSG00000179542|ENST00000356928|SLITRK4	MULTI-SECPEP	A375_MHC_IP_R1	1	358.2611999511719	3	358.544885	1072.61282	0.23353	8.3732E-05	-0.44333	-0.00015895	-0.2098	-7.5221E-05	358.5447088968411	35.382	0.50964	35.382	35.167	35.676	0					14	9	2	0	0	0	0.57806	1	11747	11747		24.882	3.2914	1	3891400			11452	8236	8120	8190	11199	11199					0.07942281303235177
ELKTLSISER	10	Unmodified	_ELKTLSISER_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MULTI-MSMS	A375_MHC_IP_R2	2	588.7341918945312	2	588.335153	1174.65575	-0.5905	-0.00034741	0.19919	0.00011719	-0.39131	-0.00023022	588.335152417385	129.91	1.0128	130.12	129.84	130.86	0.2142					37	19	2	0	0	0	0.71466	1	51038	51038		5.7319	1.7875	1	49330000	+		11453	21296	8121	8191	11200	11200					0.07541051360658457
ELKTLSISER	10	Unmodified	_ELKTLSISER_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	588.335153	1174.65575	-0.5905	-0.00034741	0.19919	0.00011719	-0.39131	-0.00023022	588.335152417385	129.91	1.0128	130.12	129.84	130.86	0.2142	0.019391	-7.8505E-05	NaN	5.7319	37	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49330000	+		11454	21296	8121	8191							0.07541051360658457
ELKVSAKKPF	10	Unmodified	_ELKVSAKKPF_					0	0	0			REV__ENSG00000170396|ENST00000302277|ZNF804A	REV__ENSG00000170396|ENST00000302277|ZNF804A	MULTI-SECPEP	A375_MHC_IP_R1	1	382.616943359375	3	382.900891	1145.68084	0.36945	0.00014146	-0.05731	-2.1944E-05	0.31214	0.00011952	382.90078989309814	54.695	0.91216	54.695	54.163	55.075	0					19	17	2	0	0	0	0.93407	1	19353	19353		4.4062	0	1	1842600	+		11455	20989	8122	8192	11201	11201					0.11383150953906807
ELKYLKQYKEK	11	Unmodified	_ELKYLKQYKEK_					0	0	0		ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50;RAD50|p.K596Efs*12|1|0.13|ENSG00000113522|chr5:132592026-132592027|-/GAGAAACAACTCAAGAGGGAGAAATATAT|frameshift_variant	ENSG00000113522|ENST00000378823|RAD50	ENSG00000113522|ENST00000378823|RAD50	MSMS	A375_MHC_IP_R2	2	490.694091796875	3	490.616932	1468.82897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.369	1	84.108	83.608	84.608	0.73962								0	0	0	0.16253	1	31686	31686		5.5233	1.6774	1				11456	3158	8123	8193	11202	11202					0.11330417417048011
ELLCFLGFY	9	Unmodified	_ELLCFLGFY_					0	0	0		ENSG00000039987|ENST00000553030|BEST2	ENSG00000039987|ENST00000553030|BEST2	ENSG00000039987|ENST00000553030|BEST2	MULTI-SECPEP	A375_MHC_IP_R2	2	553.187255859375	2	552.775354	1103.53615	-1.1267	-0.00062283	-0.47973	-0.00026518	-1.6065	-0.00088801	552.7750426579047	22.917	0.40905	23.547	23.317	23.726	0.63014					10	7	2	0	0	0	0.55359	1	7271	7271		10.824	0	1	2029700			11457	1162	8124	8194	11203	11203					-0.011472335175994886
ELLCIRSLESL	11	Unmodified	_ELLCIRSLESL_					0	0	0			REV__ENST00000560708.5_1_15:89021278-89021398:+|nuORF	REV__ENST00000560708.5_1_15:89021278-89021398:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	426.17498779296875	3	425.904084	1274.69042	0.43404	0.00018486	4.4582	0.0018988	4.8922	0.0020836	425.90618220266384	45.005	0.30378	45.005	44.777	45.081	0					7	5	2	0	0	0	0.73472	1	15693	15693		4.4062	0.52982	1	1070400	+		11458	26170	8125	8195	11204	11204					0.06406551177133224
ELLDCLASHSM	11	Unmodified	_ELLDCLASHSM_					0	0	0		ERICH1|p.R375C|1|0.36|ENSG00000104714|chr8:668733-668733|G/A|missense_variant	ERICH1|p.R375C|1|0.36|ENSG00000104714|chr8:668733-668733|G/A|missense_variant	ERICH1|p.R375C|1|0.36|ENSG00000104714|chr8:668733-668733|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	609.6932373046875	2	609.778299	1217.54204	-0.33838	-0.00020634	1.8192	0.0011093	1.4808	0.00090297	609.7790878838931	75.589	0.29988	75.589	75.464	75.764	0					7	5	2	0	0	0	0.9836	1	27503	27503		11.495	1.4208	1	956520			11459	13957	8126	8196	11205	11205					-0.05802503068252918
ELLDFTQRQLY	11	Unmodified	_ELLDFTQRQLY_					0	0	0		ZNF229|p.S53F|1|0.16|ENSG00000278318|chr19:44432302-44432302|G/A|missense_variant	ZNF229|p.S53F|1|0.16|ENSG00000278318|chr19:44432302-44432302|G/A|missense_variant	ZNF229|p.S53F|1|0.16|ENSG00000278318|chr19:44432302-44432302|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	713.4595947265625	2	713.372266	1424.72998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.77	1	124.1	123.6	124.6	0.32969								0	0	0	0.16138	1	47676	47676		11.495	5.7629	1				11460	30206	8127	8197	11206	11206					0.034603944522132224
ELLDPAVLR	9	Unmodified	_ELLDPAVLR_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1;REV__nc|ENSG00000131018|Q8NF91-7|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	A375_MHC_IP_R2	2	512.6783447265625	2	513.303124	1024.5917	-0.83586	-0.00042905	-0.30469	-0.0001564	-1.1406	-0.00058545	513.3031403649078	55.527	0.35425	56.278	56.034	56.388	0.75075					10	6	2	0	0	0	0.65246	1	20967	20967		15.847	9.6414	1	1840800	+		11461	18581;27223	8128	8198	11207	11207					0.0803831599437217
ELLDRGWRERL	11	Unmodified	_ELLDRGWRERL_					0	0	0			REV__ENST00000263354.7_1_19:47991268-47991526:-|nuORF	REV__ENST00000263354.7_1_19:47991268-47991526:-|nuORF	MSMS	A375_MHC_IP_R2	2	481.6892395019531	3	481.600275	1441.779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.176	1	79.921	79.421	80.421	0.74474								0	0	0	0.16203	1	30048	30048		4.1166	0	1		+		11462	23223	8129	8199	11208	11208					0.07577727531770506
ELLDTAQHF	9	Unmodified	_ELLDTAQHF_					0	0	0			REV__ENSG00000166188|ENST00000299237|ZNF319	REV__ENSG00000166188|ENST00000299237|ZNF319	MULTI-MSMS	A375_MHC_IP_R1	1	537.6658935546875	2	537.266739	1072.51892	-0.56615	-0.00030417	0.66943	0.00035966	0.10328	5.5491E-05	537.2665334567845	70.399	0.61367	70.399	70.135	70.749	0					24	11	3	0	0	0	0.58047	1	25573	25573		15.847	1.9411	1	2395000	+		11463	20659	8130	8200	11209	11209					-0.014434377990482972
ELLEKRLEE	9	Unmodified	_ELLEKRLEE_					0	0	0			REV__nc|ENSG00000100503|Q8N4C6-6|NIN	REV__nc|ENSG00000100503|Q8N4C6-6|NIN	MULTI-MSMS	A375_MHC_IP_R1	1	387.2839660644531	3	386.883677	1157.6292	-0.051372	-1.9875E-05	0.32087	0.00012414	0.2695	0.00010426	386.8837687359455	38.086	0.61148	38.086	37.812	38.423	0					23	11	4	0	0	0	0.11715	1	12866	12866		37.771	0	1	7481100	+		11464	17098	8131	8201	11210	11210					0.05669362469348016
ELLEQLMRHY	10	Unmodified	_ELLEQLMRHY_					0	0	0		ENST00000574450.1_1_16:25186216-25189341:+|nuORF;nc|ENSG00000205629|Q9UIC8-3|LCMT1;ENSG00000205629|ENST00000399069|LCMT1;nc|ENSG00000205629|Q9UIC8-2|LCMT1	ENST00000574450.1_1_16:25186216-25189341:+|nuORF	ENST00000574450.1_1_16:25186216-25189341:+|nuORF	MSMS	A375_MHC_IP_R1	1	666.3975830078125	2	666.342455	1330.67036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.841	1	66.841	66.341	67.341	0								0	0	0	0.15435	1	24217	24217		6.7232	1.4263	1				11465	9520	8132	8202	11211	11211					0.018248002371819894
ELLEVGITV	9	Unmodified	_ELLEVGITV_					0	0	0			REV__nc|ENSG00000156535|Q6YHK3-3|CD109	REV__nc|ENSG00000156535|Q6YHK3-3|CD109	MULTI-SECPEP	A375_MHC_IP_R1	1	487.1834411621094	2	486.784233	971.553913	-0.4885	-0.00023779	-0.83723	-0.00040755	-1.3257	-0.00064534	486.7836757354142	131.76	0.25284	131.76	131.63	131.88	0					7	4	2	0	0	0	0.55359	1	50833	50833		15.847	1.0089	1	3101800	+		11466	19988	8133	8203	11212	11212					0.06699805008906878
ELLFRILKTV	10	Unmodified	_ELLFRILKTV_					0	0	0		ZC3H4|p.S1047F|1|0.27|ENSG00000130749|chr19:47067128-47067128|G/A|missense_variant	ZC3H4|p.S1047F|1|0.27|ENSG00000130749|chr19:47067128-47067128|G/A|missense_variant	ZC3H4|p.S1047F|1|0.27|ENSG00000130749|chr19:47067128-47067128|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	616.670654296875	2	616.392273	1230.76999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.63	1	93.63	93.13	94.13	0								0	0	0	0.15531	1	34417	34417		3.5965	0	1				11467	30187	8134	8204	11213	11213					0.16383985913398647
ELLGKHYQL	9	Unmodified	_ELLGKHYQL_					0	0	0			REV__ENSG00000126790|ENST00000247194|L3HYPDH	REV__ENSG00000126790|ENST00000247194|L3HYPDH	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6165771484375	2	550.808574	1099.60259	-0.98448	-0.00054226	0.065582	3.6123E-05	-0.9189	-0.00050614	550.8085388851493	72.174	0.55569	72.908	72.669	73.225	0.73421					16	10	2	0	0	0	0.69504	1	27477	27477		4.3292	0.38484	1	3719400	+		11468	18398	8135	8205	11214	11214					0.05677718368656315
ELLGLTEFISR	11	Unmodified	_ELLGLTEFISR_					0	0	0			REV__ENST00000468247.1_1_1:8716451-8763247:-|nuORF	REV__ENST00000468247.1_1_1:8716451-8763247:-|nuORF	MSMS	A375_MHC_IP_R1	1	639.2274780273438	2	639.358628	1276.7027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.17	1	120.17	119.67	120.67	0								0	0	0	0.16172	1	44493	44493		12.241	4.0851	1		+		11469	25078	8136	8206	11215	11215					0.07541910911800187
ELLGRGSSVDF	11	Unmodified	_ELLGRGSSVDF_					0	0	0		ANK2|p.S92F|1|0.21|ENSG00000145362|chr4:113196456-113196456|C/T|missense_variant	ANK2|p.S92F|1|0.21|ENSG00000145362|chr4:113196456-113196456|C/T|missense_variant	ANK2|p.S92F|1|0.21|ENSG00000145362|chr4:113196456-113196456|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	590.5980834960938	2	590.303852	1178.59315	-0.36287	-0.0002142	0.011331	6.6888E-06	-0.35154	-0.00020752	590.803736156718	94.1	0.40149	94.1	93.84	94.241	0					9	7	2	0	0	0	0.73016	1	34533	34533		8.7454	0	1	502260			11470	136	8137	8207	11216	11216					0.010999052924944408
ELLGTGYDEF	10	Unmodified	_ELLGTGYDEF_					0	0	0			REV__ENSG00000174776|ENST00000682715|WDR49	REV__ENSG00000174776|ENST00000682715|WDR49	MULTI-MSMS	A375_MHC_IP_R1	1	572.2318115234375	2	572.263862	1142.51317	-0.1855	-0.00010616	0.47688	0.0002729	0.29137	0.00016674	572.2641778819184	105.02	0.20222	105.02	104.84	105.05	0					5	3	2	0	0	0	0.70329	1	38531	38531		10.824	2.2306	1	516600	+		11471	21297	8138	8208	11217	11217					-0.05238581101366435
ELLHKLWWRNN	11	Unmodified	_ELLHKLWWRNN_					0	0	0		ENST00000541562.5_2_6:30882981-30883968:+|nuORF	ENST00000541562.5_2_6:30882981-30883968:+|nuORF	ENST00000541562.5_2_6:30882981-30883968:+|nuORF	MSMS	A375_MHC_IP_R2	2	755.08349609375	2	754.909685	1507.80482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.6	1	126.87	126.37	127.37	0.27168								0	0	0	0.16302	1	49551	49551		2.9952	1.3426	1				11472	13287	8139	8209	11218	11218					0.07122621774078652
ELLIAKGNSI	10	Unmodified	_ELLIAKGNSI_					0	0	0			REV__tr|U7T703|U7T703_FUSNUDUF1353domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00071PE=4SV=1	REV__tr|U7T703|U7T703_FUSNUDUF1353domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00071PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	529.2241821289062	2	529.316232	1056.61791	-0.70087	-0.00037098	-1.8433	-0.0009757	-2.5442	-0.0013467	529.3144232770155	80.446	0.60745	80.446	80.238	80.846	0					17	11	2	0	0	0	0.87163	1	29518	29518		9.3831	0	1	1111300	+		11473	28875	8140	8210	11219	11219					0.09186585165844008
ELLKCRQPAP	10	Unmodified	_ELLKCRQPAP_					0	0	0		nc|ENSG00000172366|Q9BUT9-2|MCRIP2;ENSG00000172366|ENST00000307650|MCRIP2	nc|ENSG00000172366|Q9BUT9-2|MCRIP2	nc|ENSG00000172366|Q9BUT9-2|MCRIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	577.69775390625	2	577.821158	1153.62776	-0.27274	-0.0001576	4.4348	0.0025625	4.1621	0.0024049	578.3244196686777	55.436	0.2533	56.186	56.084	56.337	0.75075					7	4	2	0	0	0	0.92957	1	20966	20966		3.2813	0	1	589720			11474	7703	8141	8211	11220	11220					0.05709449899586616
ELLKKVPPR	9	Unmodified	_ELLKKVPPR_					0	0	0			REV__ENSG00000165661|ENST00000358701|QSOX2	REV__ENSG00000165661|ENST00000358701|QSOX2	MULTI-SECPEP	A375_MHC_IP_R2	2	360.9690246582031	3	360.569365	1078.68626	-0.94037	-0.00033907	-1.921	-0.00069265	-2.8614	-0.0010317	360.9029009328853	28.9	1.2512	29.598	29.183	30.434	0.69872					62	24	3	0	0	0	0.24548	1	9973	9973		16.566	0	1	14456000	+		11475	20608	8142	8212	11221	11221					0.15006874536356918
ELLKLLLPLLL	11	Unmodified	_ELLKLLLPLLL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MSMS	A375_MHC_IP_R2	2	639.4769897460938	2	639.443975	1276.8734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.413	1	83.156	82.656	83.656	0.74293								0	0	0	0.16354	1	31305	31305		0.30703	0.30703	1				11476	8598	8143	8213	11222	11222					0.24603473301249323
ELLKRYITI	9	Unmodified	_ELLKRYITI_					0	0	0			REV__ENST00000425226.1_1_2:203705056-203705395:-|nuORF	REV__ENST00000425226.1_1_2:203705056-203705395:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	384.28656005859375	3	383.572775	1147.69649	-0.11998	-4.6022E-05	0.073342	2.8132E-05	-0.046642	-1.7891E-05	383.57263723519395	30.433	0.40571	31.151	30.86	31.266	0.71857					11	7	2	0	0	0	0.63622	1	10636	10636		14.405	0	1	992890	+		11477	24633	8144	8214	11223	11223					0.12855437470943798
ELLKTFQNT	9	Unmodified	_ELLKTFQNT_					0	0	0		ENST00000530004.5_2_1:51753565-51753826:-|nuORF	ENST00000530004.5_2_1:51753565-51753826:-|nuORF	ENST00000530004.5_2_1:51753565-51753826:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	365.6243896484375	3	365.201118	1092.58152	0.32875	0.00012006	-1.9415	-0.00070904	-1.6127	-0.00058898	365.19996945101644	20.474	0.25293	20.474	20.283	20.536	0					5	4	2	0	0	0	0.7911	1	5269	5269		4.5289	0	1	346630			11478	13142	8145	8215	11224	11224					0.038937082691290925
ELLKYLEEI	9	Unmodified	_ELLKYLEEI_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	A375_MHC_IP_R1	1	575.7242431640625	2	575.323722	1148.63289	-0.15154	-8.7184E-05	0.13267	7.6327E-05	-0.018872	-1.0857E-05	575.3238677114167	104.51	0.70949	104.51	104.18	104.89	0					32	13	3	0	0	0	0.014055	1	38360	38360		110.67	10.919	1	6170000	+		11479	18428	8146	8216	11225	11225					0.06452032243191752
ELLKYLEEI	9	Unmodified	_ELLKYLEEI_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	A375_MHC_IP_R2	2	575.72314453125	2	575.323722	1148.63289	-0.16556	-9.525E-05	-0.12817	-7.3741E-05	-0.29373	-0.00016899	575.3237554695357	103.51	0.76204	104.27	103.94	104.7	0.76428					34	14	4	0	0	0	0.10535	1	39185	39185		72.968	2.6359	1	5500000	+		11480	18428	8146	8216	11226	11226					0.06452032243191752
ELLLLRLLLL	10	Unmodified	_ELLLLRLLLL_					0	0	0		ENSG00000262484|ENST00000571838|CCER2	ENSG00000262484|ENST00000571838|CCER2	ENSG00000262484|ENST00000571838|CCER2	MSMS	A375_MHC_IP_R2	2	605.2539672851562	2	604.920667	1207.82678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.37	1	112.11	111.61	112.61	0.73692								0	0	0	0.15591	1	41993	41993		1.6526	0.17072	1				11481	9946	8147	8217	11227	11227					0.23118033469950205
ELLLQEKKKLY	11	Unmodified	_ELLLQEKKKLY_					0	0	0		CFAP58|p.E755K|1|0.38|ENSG00000120051|chr10:104447704-104447704|G/A|missense_variant	CFAP58|p.E755K|1|0.38|ENSG00000120051|chr10:104447704-104447704|G/A|missense_variant	CFAP58|p.E755K|1|0.38|ENSG00000120051|chr10:104447704-104447704|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	703.1627197265625	2	702.926677	1403.8388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.596	1	79.596	79.096	80.096	0								0	0	0	0.1629	1	29056	29056		3.5965	0	1				11482	371	8148	8218	11228	11228					0.15303605422468536
ELLNTTRQGTL	11	Unmodified	_ELLNTTRQGTL_					0	0	0			REV__tr|U7T2F7|U7T2F7_FUSNUGTPaseDerOS=FusobacteriumnucleatumCTI-5OX=1316586GN=derPE=3SV=1	REV__tr|U7T2F7|U7T2F7_FUSNUGTPaseDerOS=FusobacteriumnucleatumCTI-5OX=1316586GN=derPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	415.6266174316406	3	415.898098	1244.67246	0.40567	0.00016872	0.45108	0.0001876	0.85675	0.00035632	415.89825860642736	23.01	0.75944	23.01	22.723	23.483	0					22	14	3	0	0	0	0.99681	1	6321	6321		4.4062	2.6639	1	4294100	+		11483	28739	8149	8219	11229	11229					0.059915522466326365
ELLPGVDVLL	10	Unmodified	_ELLPGVDVLL_					0	0	0		CUEDC2|p.L217Cfs*5|1|0.28|ENSG00000107874|chr10:102423805-102423805|G/-|frameshift_variant;ENSG00000107874|ENST00000369937|CUEDC2	CUEDC2|p.L217Cfs*5|1|0.28|ENSG00000107874|chr10:102423805-102423805|G/-|frameshift_variant	CUEDC2|p.L217Cfs*5|1|0.28|ENSG00000107874|chr10:102423805-102423805|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	534.7203979492188	2	534.320983	1066.62741	-0.91026	-0.00048637	-0.16327	-8.7241E-05	-1.0735	-0.00057361	534.320830631606	131.7	0.2025	131.7	131.63	131.83	0					8	3	3	0	0	0	0.35113	1	50803	50803		52.268	2.3353	1	12305000			11484	684	8150	8220	11230	11230					0.09676353451391151
ELLPHRGRR	9	Unmodified	_ELLPHRGRR_					0	0	0		ENST00000440364.6_1_5:153826115-153832963:+|nuORF;ENST00000426761.2_1_5:153826115-153833002:+|nuORF;ENST00000297109.10_1_5:153825644-153830670:+|nuORF	ENST00000440364.6_1_5:153826115-153832963:+|nuORF	ENST00000440364.6_1_5:153826115-153832963:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	379.2864685058594	3	378.559863	1132.65776	-0.18114	-6.8573E-05	1.0239	0.0003876	0.84275	0.00031903	378.5605504119692	23.433	0.81063	24.063	23.675	24.485	0.63014					26	15	3	0	0	0	0.69317	1	7516	7516		7.609	0.50723	1	4162700			11485	10513	8151	8221	11231	11231					0.0967356967980777
ELLPKDELND	10	Unmodified	_ELLPKDELND_					0	0	0		nc|ENSG00000144115|Q86YJ6-4|THNSL2;ENSG00000144115|ENST00000674334|THNSL2;ENST00000475910.1_1_2:88472795-88474928:+|nuORF;nc|ENSG00000144115|Q86YJ6-3|THNSL2;nc|ENSG00000144115|Q86YJ6-2|THNSL2	nc|ENSG00000144115|Q86YJ6-4|THNSL2	nc|ENSG00000144115|Q86YJ6-4|THNSL2	MULTI-MSMS	A375_MHC_IP_R1	1	396.2715148925781	3	395.871438	1184.59248	-0.20609	-8.1584E-05	0.58386	0.00023113	0.37777	0.00014955	395.871599785821	32.998	0.40473	32.998	32.785	33.19	0					11	7	2	0	0	0	0.70972	1	10719	10719		7.9454	0.46833	1	5554900			11486	5463	8152	8222	11232	11232					0.007570658527583873
ELLPKDELND	10	Unmodified	_ELLPKDELND_					0	0	0		nc|ENSG00000144115|Q86YJ6-4|THNSL2;ENSG00000144115|ENST00000674334|THNSL2;ENST00000475910.1_1_2:88472795-88474928:+|nuORF;nc|ENSG00000144115|Q86YJ6-3|THNSL2;nc|ENSG00000144115|Q86YJ6-2|THNSL2	nc|ENSG00000144115|Q86YJ6-4|THNSL2	nc|ENSG00000144115|Q86YJ6-4|THNSL2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	395.871438	1184.59248	-0.20609	-8.1584E-05	0.58386	0.00023113	0.37777	0.00014955	395.871599785821	32.998	0.40473	32.998	32.785	33.19	0	0.039786	0.00040258	NaN	7.9454	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5554900			11487	5463	8152	8222							0.007570658527583873
ELLPNYRF	8	Unmodified	_ELLPNYRF_					0	0	0			REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1	REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1	MSMS	A375_MHC_IP_R2	2	526.0426025390625	2	526.282192	1050.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.321	1	67.057	66.557	67.557	0.73631								0	0	0	0.16876	1	25132	25132		13.508	0.97634	1		+		11488	28881	8153	8223	11233	11233					0.026577603058512977
ELLQEYNW	8	Unmodified	_ELLQEYNW_					0	0	0		ENSG00000136750|ENST00000376261|GAD2	ENSG00000136750|ENST00000376261|GAD2	ENSG00000136750|ENST00000376261|GAD2	MULTI-SECPEP	A375_MHC_IP_R1	1	548.1375122070312	2	547.761289	1093.50803	-0.55592	-0.00030451	3.0964	0.0016961	2.5405	0.0013916	547.7635828491863	95.993	0.15143	95.993	95.867	96.018	0					4	2	2	0	0	0	0.972	1	35291	35291		8.5933	0	1	653680			11489	4813	8154	8224	11234	11234					-0.03498840173347162
ELLQKGKWR	9	Unmodified	_ELLQKGKWR_					0	0	0		ENST00000552014.5_1_12:113770667-113772302:-|nuORF	ENST00000552014.5_1_12:113770667-113772302:-|nuORF	ENST00000552014.5_1_12:113770667-113772302:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	386.25616455078125	3	386.564502	1156.67168	-0.1617	-6.2507E-05	-0.65055	-0.00025148	-0.81225	-0.00031399	386.5642775286681	31.421	0.30721	32.14	31.974	32.282	0.71857					9	5	2	0	0	0	0.80535	1	11161	11161		2.2828	0	1	1164100			11490	13385	8155	8225	11235	11235					0.09960802388218326
ELLQVLQSL	9	Unmodified	_ELLQVLQSL_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	A375_MHC_IP_R2	2	522.210205078125	2	521.810782	1041.60701	-0.77929	-0.00040664	-0.4214	-0.00021989	-1.2007	-0.00062654	521.8105509282345	39.114	0.4088	39.888	39.607	40.016	0.77451					15	7	3	0	0	0	0.58271	1	14437	14437		14.838	0	1	5435600			11491	5332	8156	8226	11236	11236					0.08787182791570558
ELLRDAVKFGE	11	Unmodified	_ELLRDAVKFGE_					0	0	0		ENST00000467189.1_1_3:72136574-72136808:+|nuORF	ENST00000467189.1_1_3:72136574-72136808:+|nuORF	ENST00000467189.1_1_3:72136574-72136808:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	426.634765625	3	426.23471	1275.6823	-0.033762	-1.439E-05	-0.36961	-0.00015754	-0.40337	-0.00017193	426.2346764109603	20.346	0.60849	20.346	20.03	20.638	0					26	11	3	0	0	0	0.69231	1	5202	5202		9.2438	0.95734	1	3175400			11492	12276	8157	8227	11237	11237					0.0554874025197023
ELLRFRRKRRH	11	Unmodified	_ELLRFRRKRRH_					0	0	0		ENSG00000145888|ENST00000274576|GLRA1;nc|ENSG00000145888|P23415|GLRA1	ENSG00000145888|ENST00000274576|GLRA1	ENSG00000145888|ENST00000274576|GLRA1	MSMS	A375_MHC_IP_R2	2	783.8641967773438	2	783.981841	1565.94913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.27	1	116.93	116.43	117.43	0.65962								0	0	0	0.16331	1	43886	43886		1.4819	0.28856	1				11493	5590	8158	8228	11238	11238					0.18879308044711252
ELLRGRRPY	9	Unmodified	_ELLRGRRPY_					0	0	0		ENSG00000169302|ENST00000397936|STK32A;nc|ENSG00000169302|Q8WU08-3|STK32A;ENST00000306304.10_1_5:146619197-146754823:+|nuORF	ENSG00000169302|ENST00000397936|STK32A	ENSG00000169302|ENST00000397936|STK32A	MSMS	A375_MHC_IP_R2	2	580.394287109375	2	580.338364	1158.66217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.81	1	111.55	111.05	112.05	0.73692								0	0	0	0.15486	1	41794	41794		4.756	0.42677	1				11494	7398	8159	8229	11239	11239					0.08919034102700607
ELLRIPSY	8	Unmodified	_ELLRIPSY_					0	0	0			REV__ENSG00000115020|ENST00000264380|PIKFYVE	REV__ENSG00000115020|ENST00000264380|PIKFYVE	MSMS	A375_MHC_IP_R2	2	495.79632568359375	2	495.784567	989.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.849	1	86.584	86.084	87.084	0.73508								0	0	0	0.16876	1	32643	32643		19.439	1.304	1		+		11495	17852	8160	8230	11240	11240					0.0593864444861083
ELLRLGPAV	9	Unmodified	_ELLRLGPAV_					0	0	0			REV__ENSG00000204128|ENST00000373640|C2orf72	REV__ENSG00000204128|ENST00000373640|C2orf72	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6449279785156	2	484.300384	966.586216	-0.9621	-0.00046595	-0.16065	-7.7803E-05	-1.1228	-0.00054375	484.3002830828699	58.882	0.35508	59.629	59.438	59.793	0.74714					10	6	2	0	0	0	0.50702	1	22280	22280		19.257	2.3147	1	1235300	+		11496	22488	8161	8231	11241	11241					0.10158637202573573
ELLRPQSF	8	Unmodified	_ELLRPQSF_					0	0	0			REV__ENSG00000198796|ENST00000361673|ALPK2	REV__ENSG00000198796|ENST00000361673|ALPK2	MULTI-SECPEP	A375_MHC_IP_R1	1	494.695068359375	2	495.274367	988.53418	-0.38262	-0.0001895	-0.53089	-0.00026294	-0.91352	-0.00045244	495.27404366918864	60.552	0.25495	60.552	60.363	60.618	0					6	4	2	0	0	0	0.95423	1	21746	21746		12.532	12.532	1	568830	+		11497	22422	8162	8232	11242	11242					0.03945473788803611
ELLRVKLMG	9	Unmodified	_ELLRVKLMG_					0	0	0		ENST00000560419.1_1_14:75892331-75892463:-|nuORF	ENST00000560419.1_1_14:75892331-75892463:-|nuORF	ENST00000560419.1_1_14:75892331-75892463:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	352.9774475097656	3	353.551205	1057.63179	-0.3913	-0.00013834	-1.9539	-0.00069081	-2.3452	-0.00082915	353.88464614483985	26.999	0.61388	27.664	27.318	27.932	0.66488					24	11	3	0	0	0	0.62767	1	9133	9133		11.495	4.8643	1	2132100			11498	13493	8163	8233	11243	11243					0.10527539393319785
ELLSIVLWR	9	Unmodified	_ELLSIVLWR_					0	0	0			REV__ENSG00000068878|ENST00000404125|PSME4	REV__ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	A375_MHC_IP_R1	1	376.9368591308594	3	376.89737	1127.67028	0.40717	0.00015346	0.020079	7.5679E-06	0.42725	0.00016103	376.8973627611393	55.866	0.7621	55.866	55.482	56.244	0					31	14	3	0	0	0	0.65721	1	20066	20066		7.1017	0.90987	1	10565000	+		11499	16548	8164	8234	11244	11244					0.11155168299433171
ELLSIVLWR	9	Unmodified	_ELLSIVLWR_					0	0	0			REV__ENSG00000068878|ENST00000404125|PSME4	REV__ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	A375_MHC_IP_R2	2	376.9364929199219	3	376.89737	1127.67028	0.064481	2.4303E-05	0.12909	4.8653E-05	0.19357	7.2956E-05	376.89740455993876	55.003	0.81541	55.754	55.422	56.237	0.75075					32	15	3	0	0	0	0.65721	1	20859	20859		7.1017	2.5729	1	14561000	+		11500	16548	8164	8234	11245	11245					0.11155168299433171
ELLSLRDIER	10	Unmodified	_ELLSLRDIER_					0	0	0		ENSG00000198301|ENST00000356260|SDAD1;nc|ENSG00000198301|Q9NVU7-2|SDAD1;ENST00000395710.5_1_4:76871905-76902632:-|nuORF	ENSG00000198301|ENST00000356260|SDAD1	ENSG00000198301|ENST00000356260|SDAD1	MULTI-SECPEP	A375_MHC_IP_R2	2	415.1160888671875	3	415.238343	1242.6932	0.068805	2.857E-05	2.3992	0.00099625	2.468	0.0010248	415.5738948022104	42.874	0.50661	43.647	43.369	43.876	0.7724					12	9	2	0	0	0	0.93873	1	15893	15893		7.9454	1.315	1	817650			11501	9253	8165	8235	11246	11246					0.08156142626239671
ELLSSDNALY	10	Unmodified	_ELLSSDNALY_					0	0	0		ENSG00000107611|ENST00000377833|CUBN;CUBN|p.T1131Qfs*16|1|0.09|ENSG00000107611|chr10:17046033-17046034|-/AATTGCAAGTCTTG|frameshift_variant	ENSG00000107611|ENST00000377833|CUBN	ENSG00000107611|ENST00000377833|CUBN	MULTI-MSMS	A375_MHC_IP_R2	2	563.2158203125	2	562.777136	1123.53972	-0.39453	-0.00022203	-1.3527	-0.00076127	-1.7472	-0.0009833	562.7768667729724	85.319	0.40772	86.055	85.831	86.239	0.73601					16	7	3	0	0	0	0.62155	1	32392	32392		19.257	0.88389	1	1542900			11502	2745	8166	8236	11247	11247					-0.017108922100533164
ELLVKRYQKVK	11	Unmodified	_ELLVKRYQKVK_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-SECPEP	A375_MHC_IP_R1	1	701.9737548828125	2	702.440286	1402.86602	-0.96174	-0.00067556	-0.49083	-0.00034478	-1.4526	-0.0010203	702.4400935761776	147.32	0.080948	147.32	147.27	147.36	0					15	8	2	0	0	0	1.0014	1	56305	56305		0.30703	0	1	87742	+		11503	21862	8167	8237	11248	11248					0.1807013375346287
ELLVNWFH	8	Unmodified	_ELLVNWFH_					0	0	0			REV__nc|ENSG00000214198|Q6P2S7-2|TTC41P	REV__nc|ENSG00000214198|Q6P2S7-2|TTC41P	MULTI-SECPEP	A375_MHC_IP_R2	2	352.9774475097656	3	353.187032	1056.53927	-0.54775	-0.00019346	-0.35607	-0.00012576	-0.90382	-0.00031922	353.18696640526053	26.708	0.45909	27.368	27.109	27.568	0.65992					12	8	2	0	0	0	0.97144	1	9133	9133		6.7232	1.8262	1	1197700	+		11504	27490	8168	8238	11249	11249					0.013257776514137731
ELLYEVARNP	10	Unmodified	_ELLYEVARNP_					0	0	0			REV__ENSG00000124313|ENST00000642864|IQSEC2	REV__ENSG00000124313|ENST00000642864|IQSEC2	MULTI-SECPEP	A375_MHC_IP_R1	1	603.1220092773438	2	602.322045	1202.62954	-0.23664	-0.00014254	0.54914	0.00033076	0.3125	0.00018822	602.322342197012	110.95	0.56277	110.95	110.59	111.16	0					14	10	2	0	0	0	0.91556	1	40725	40725		10.074	0.6908	1	873620	+		11505	18296	8169	8239	11250	11250					0.036327821891973144
ELLYPPPLTSS	11	Unmodified	_ELLYPPPLTSS_					0	0	0			REV__ENSG00000156140|ENST00000286657|ADAMTS3	REV__ENSG00000156140|ENST00000286657|ADAMTS3	MULTI-SECPEP	A375_MHC_IP_R1	1	406.62762451171875	3	406.220178	1215.63871	-0.51789	-0.00021038	0.22301	9.0593E-05	-0.29487	-0.00011978	406.21989001034535	41.11	0.50362	41.11	40.762	41.266	0					12	9	2	0	0	0	0.95991	1	14066	14066		10.315	0	1	965200	+		11506	19964	8170	8240	11251	11251					0.039511307548536934
ELMEKKLMDY	10	Unmodified	_ELMEKKLMDY_					0	0	0		ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	MULTI-MSMS	A375_MHC_IP_R2	2	434.2823791503906	3	433.882292	1298.62505	-0.59335	-0.00025744	0.52625	0.00022833	-0.0671	-2.9113E-05	434.21689223322824	21.374	0.71039	21.993	21.625	22.336	0.61932					31	13	3	0	0	0	0.52785	1	6672	6672		17.863	0.81459	1	18829000			11507	3641	8171	8241	11252	11252					-0.01232186340212138
ELMELSKRI	9	Unmodified	_ELMELSKRI_					0	0	0			REV__nc|ENSG00000126214|Q07866-8|KLC1	REV__nc|ENSG00000126214|Q07866-8|KLC1	MULTI-SECPEP	A375_MHC_IP_R2	2	560.214599609375	2	559.815541	1117.61653	-0.66858	-0.00037428	-1.047	-0.00058614	-1.7156	-0.00096042	559.8153449908125	41.806	0.46063	42.581	42.35	42.811	0.77451					15	8	3	0	0	0	0.77396	1	15542	15542		6.2058	1.4498	1	4432400	+		11508	18380	8172	8242	11253	11253					0.06242627805454504
ELMGKRWLHY	10	Unmodified	_ELMGKRWLHY_					0	0	0		ENST00000314970.10_1_4:185580560-185587128:+|nuORF	ENST00000314970.10_1_4:185580560-185587128:+|nuORF	ENST00000314970.10_1_4:185580560-185587128:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	444.30889892578125	3	444.900897	1331.68086	-0.1963	-8.7333E-05	1.9144	0.00085173	1.7181	0.0007644	445.23622258043537	19.467	0.25416	19.467	19.368	19.623	0					5	4	2	0	0	0	0.92389	1	4866	4866		1.9064	0.57673	1	677620			11509	10652	8173	8243	11254	11254					0.02828827682242263
ELMHQNGDY	9	Unmodified	_ELMHQNGDY_					0	0	0		nc|ENSG00000141258|O43147-5|SGSM2;nc|ENSG00000141258|O43147|SGSM2;ENSG00000141258|ENST00000268989|SGSM2;ENST00000572841.1_1_17:2279931-2282811:+|nuORF;ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENSG00000167037|ENST00000400358|SGSM1;ENST00000480523.1_1_22:25240737-25320238:+|nuORF;nc|ENSG00000167037|Q2NKQ1|SGSM1;nc|ENSG00000167037|Q2NKQ1-3|SGSM1	nc|ENSG00000141258|O43147-5|SGSM2;ENST00000473458.5_1_22:25240737-25320238:+|nuORF	nc|ENSG00000141258|O43147-5|SGSM2	MULTI-MSMS	A375_MHC_IP_R2	2	554.1909790039062	2	553.732206	1105.44986	-1.5123	-0.00083739	2.0088	0.0011123	0.49654	0.00027495	553.7333499849236	29.426	0.35429	30.125	29.981	30.335	0.69872					10	6	2	0	0	0	0.6898	1	10254	10254		7.9102	0	1	2531700			11510	5223;7149	8174	8244	11255	11255					-0.09864845090260133
ELMIYIFSI	9	Unmodified	_ELMIYIFSI_					0	0	0		ENSG00000196098|ENST00000354924|OR5K4	ENSG00000196098|ENST00000354924|OR5K4	ENSG00000196098|ENST00000354924|OR5K4	MSMS	A375_MHC_IP_R1	1	564.7587280273438	2	564.804111	1127.59367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.412	1	90.412	89.912	90.912	0								0	0	0	0.15486	1	33226	33226		10.824	0.75	1				11511	8994	8175	8245	11256	11256					0.03497608687985121
ELMKIEIK	8	Unmodified	_ELMKIEIK_					0	0	0		RTKN2|p.M411K|1|0.09|ENSG00000182010|chr10:62199816-62199816|A/T|missense_variant	RTKN2|p.M411K|1|0.09|ENSG00000182010|chr10:62199816-62199816|A/T|missense_variant	RTKN2|p.M411K|1|0.09|ENSG00000182010|chr10:62199816-62199816|A/T|missense_variant	MSMS	A375_MHC_IP_R2	2	502.19451904296875	2	502.296453	1002.57835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.361	1	52.114	51.614	52.614	0.75225								0	0	0	0.16756	1	19327	19327		42.095	7.9921	1				11512	29095	8176	8246	11257	11257					0.07716741890783396
ELMKRIYTFRV	11	Unmodified	_ELMKRIYTFRV_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.V2686Sfs*8|1|0.21|ENSG00000086570|chr5:151543071-151543072|-/T|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	A375_MHC_IP_R1	1	486.34259033203125	3	485.942873	1454.80679	-0.51906	-0.00025224	0.68462	0.00033268	0.16555	8.0449E-05	485.9430976455277	134.4	0.91144	134.4	134.02	134.93	0					46	17	3	0	0	0	0.99482	1	51783	51783		9.2438	6.4005	1	5354700			11513	1838	8177	8247	11258	11258					0.09757914467650153
ELMKRIYTFRV	11	Unmodified	_ELMKRIYTFRV_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.V2686Sfs*8|1|0.21|ENSG00000086570|chr5:151543071-151543072|-/T|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MULTI-MATCH	A375_MHC_IP_R2	2		3	485.942873	1454.80679	-0.501	-0.00024346	0.93962	0.0004566	0.43863	0.00021315	485.9432378981972	134.33	0.96704	134.47	134.08	135.05	0.13901	0.033402	0.00021219	NaN	9.2438	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5363200			11514	1838	8177	8247							0.09757914467650153
ELMVPFQW	8	Unmodified	_ELMVPFQW_					0	0	0			REV__nc|ENSG841|P62683|ERVK-21_gag	REV__nc|ENSG841|P62683|ERVK-21_gag	MULTI-SECPEP	A375_MHC_IP_R2	2	525.7030029296875	2	525.259871	1048.50519	-0.68133	-0.00035787	-0.84807	-0.00044546	-1.5294	-0.00080333	525.7593233210447	40.812	0.3571	41.586	41.386	41.743	0.77451					10	6	2	0	0	0	0.94479	1	15094	15094		13.508	0	1	4260800	+		11515	27573	8178	8248	11259	11259					-0.017123868318094537
ELNCFRYRVRK	11	Unmodified	_ELNCFRYRVRK_					0	0	0			REV__ADAMTS1|p.S607F|1|0.42|ENSG00000154734|chr21:26839907-26839907|G/A|missense_variant	REV__ADAMTS1|p.S607F|1|0.42|ENSG00000154734|chr21:26839907-26839907|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	742.3912963867188	2	742.40117	1482.78779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.92	1	124.92	124.42	125.42	0								0	0	0	0.16249	1	47274	47274		5.7319	0	1		+		11516	15321	8179	8249	11260	11260					0.0657037789660535
ELNEDLESF	9	Unmodified	_ELNEDLESF_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	A375_MHC_IP_R2	2	547.670166015625	2	548.245669	1094.47678	-0.70647	-0.00038732	0.696	0.00038158	-0.010471	-5.7407E-06	548.2455315702729	64.169	0.25486	64.909	64.8	65.054	0.74023					6	4	2	0	0	0	0.55359	1	24327	24327		21.747	13.836	1	655420	+		11517	19778	8180	8250	11261	11261					-0.06667457998082682
ELNEDVRPH	9	Unmodified	_ELNEDVRPH_					0	0	0		ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	MULTI-MSMS	A375_MHC_IP_R2	2	555.171875	2	554.772719	1107.53089	-1.3541	-0.00075121	-0.026148	-1.4506E-05	-1.3802	-0.00076571	554.7725517795989	28.602	0.30229	29.3	29.132	29.434	0.69872					8	5	2	0	0	0	0.2002	1	9932	9932		37.974	9.4795	1	13840000			11518	4912	8181	8251	11262	11262					-0.01857821055864406
ELNEEHTV	8	Unmodified	_ELNEEHTV_					0	0	0		ENSG00000132938|ENST00000612955|MTUS2;MTUS2|p.E398Afs*19|1|0.43|ENSG00000132938|chr13:29025857-29025858|GG/-|frameshift_variant	ENSG00000132938|ENST00000612955|MTUS2	ENSG00000132938|ENST00000612955|MTUS2	MULTI-SECPEP	A375_MHC_IP_R2	2	485.1384582519531	2	485.727446	969.44034	-0.50707	-0.0002463	-1.8636	-0.0009052	-2.3707	-0.0011515	485.7263760565416	91.187	0.45514	91.921	91.767	92.222	0.7345					12	8	2	0	0	0	0.73563	1	34733	34733		36.044	9.1605	1	872200			11519	4465	8182	8252	11263	11263					-0.045602901041320365
ELNELEQESQ	10	Unmodified	_ELNELEQESQ_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST;REV__nc|ENSG00000151914|Q03001-8|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-MSMS	A375_MHC_IP_R2	2	609.7264404296875	2	609.777864	1217.54118	-0.29204	-0.00017808	-0.13718	-8.3647E-05	-0.42922	-0.00026173	609.7778119533453	46.813	0.71277	47.574	47.155	47.867	0.76128					25	13	3	0	0	0	0.70793	1	17621	17621		8.7454	0.58988	1	2805300	+		11520	19783;27289	8183	8253	11264	11264					-0.05889302911919003
ELNELEQESQ	10	Unmodified	_ELNELEQESQ_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST;REV__nc|ENSG00000151914|Q03001-8|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-MATCH	A375_MHC_IP_R1	1		2	609.777864	1217.54118	-0.32374	-0.00019741	0.066936	4.0816E-05	-0.2568	-0.00015659	609.7778641891514	47.428	0.56294	47.428	47.055	47.618	0	-0.072856	0.00014372	NaN	8.7454	23	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3769100	+		11521	19783;27289	8183	8253							-0.05889302911919003
ELNEVSFYY	9	Unmodified	_ELNEVSFYY_					0	0	0			REV__nc|ENSG00000138709|Q659C4-4|LARP1B	REV__nc|ENSG00000138709|Q659C4-4|LARP1B	MULTI-MSMS	A375_MHC_IP_R1	1	582.666748046875	2	582.266404	1162.51826	-0.61504	-0.00035812	0.97558	0.00056805	0.36054	0.00020993	582.2669870856029	67.964	1.014	67.964	67.449	68.463	0					23	19	2	0	0	0	0.41409	1	24629	24629		24.021	2.2739	1	1747600	+		11522	19114	8184	8254	11265	11265					-0.05650277238760282
ELNEVSFYY	9	Unmodified	_ELNEVSFYY_					0	0	0			REV__nc|ENSG00000138709|Q659C4-4|LARP1B	REV__nc|ENSG00000138709|Q659C4-4|LARP1B	MULTI-MSMS	A375_MHC_IP_R2	2	582.666259765625	2	582.266404	1162.51826	-0.40577	-0.00023626	0.32596	0.00018979	-0.079811	-4.6471E-05	582.2667164972112	67.153	1.0167	67.889	67.24	68.256	0.73631					25	19	2	0	0	0	0.29981	1	25455	25455		30.637	2.1497	1	1845400	+		11523	19114	8184	8254	11266	11266					-0.05650277238760282
ELNGKTLGIL	10	Unmodified	_ELNGKTLGIL_					0	0	0		ENST00000462324.1_1_1:120266943-120272245:+|nuORF;ENSG00000092621|ENST00000641023|PHGDH	ENST00000462324.1_1_1:120266943-120272245:+|nuORF	ENST00000462324.1_1_1:120266943-120272245:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	353.6130676269531	3	353.213246	1056.61791	0.08281	2.9249E-05	0.071605	2.5292E-05	0.15441	5.4541E-05	353.2131659230996	35.41	0.40723	35.41	35.218	35.625	0					14	7	3	0	0	0	0.92227	1	11806	11806		5.0475	0	1	2274600			11524	2010	8185	8255	11267	11267					0.09186585165844008
ELNGLQMMTV	10	Unmodified	_ELNGLQMMTV_					0	0	0			REV__ENST00000590311.5_1_17:67109267-67109498:-|nuORF	REV__ENST00000590311.5_1_17:67109267-67109498:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	568.1781616210938	2	568.277934	1134.54132	-0.29778	-0.00016922	-2.2763	-0.0012936	-2.5741	-0.0014628	568.2769589381818	100.92	0.55606	100.92	100.69	101.24	0					17	10	2	0	0	0	0.88918	1	37053	37053		8.7454	0	1	638290	+		11525	26430	8186	8256	11268	11268					-0.020572977172832907
ELNIIVVKP	9	Unmodified	_ELNIIVVKP_					0	0	0		tr|U7STM1|U7STM1_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01537PE=4SV=1	tr|U7STM1|U7STM1_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01537PE=4SV=1	tr|U7STM1|U7STM1_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01537PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	512.6710205078125	2	512.823692	1023.63283	-0.78199	-0.00040102	-0.16765	-8.5975E-05	-0.94964	-0.000487	512.8235834431978	67.189	0.25156	67.925	67.801	68.052	0.73631					6	4	2	0	0	0	0.76187	1	25462	25462		7.2892	0	1	551930			11526	29706	8187	8257	11269	11269					0.12196077033854635
ELNIQLPYAS	10	Unmodified	_ELNIQLPYAS_					0	0	0			REV__ADAD1|p.M465I|1|0.31|ENSG00000164113|chr4:122415524-122415524|G/A|missense_variant	REV__ADAD1|p.M465I|1|0.31|ENSG00000164113|chr4:122415524-122415524|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	575.2006225585938	2	574.303321	1146.59209	-0.51723	-0.00029705	-1.5726	-0.00090312	-2.0898	-0.0012002	574.303018571308	38.741	1.222	39.516	39.047	40.269	0.77451					42	23	3	0	0	0	0.62015	1	14196	14196		19.362	3.2128	1	8327100	+		11527	15307	8188	8258	11270	11270					0.024656909235773128
ELNKLEAIN	9	Unmodified	_ELNKLEAIN_					0	0	0			REV__RSU1|p.F71Lfs*21|1|0.34|ENSG00000148484|chr10:16764458-16764458|A/-|frameshift_variant	REV__RSU1|p.F71Lfs*21|1|0.34|ENSG00000148484|chr10:16764458-16764458|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	522.210205078125	2	522.290214	1042.56587	-0.62088	-0.00032428	0.54938	0.00028693	-0.0715	-3.7344E-05	522.2905866354292	65.17	1.3227	65.908	64.9	66.222	0.73811					41	25	3	0	0	0	0.4465	1	24442	24442		38.176	14.155	1	2038700	+		11528	19635	8189	8259	11271	11271					0.046294217521108294
ELNKNEYNQ	9	Unmodified	_ELNKNEYNQ_					0	0	0		tr|U7SNB2|U7SNB2_FUSNUMobA/VirD2-likenucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01848PE=4SV=1	tr|U7SNB2|U7SNB2_FUSNUMobA/VirD2-likenucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01848PE=4SV=1	tr|U7SNB2|U7SNB2_FUSNUMobA/VirD2-likenucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01848PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	576.1038818359375	2	576.27001	1150.52547	-0.16364	-9.4301E-05	-0.75522	-0.00043521	-0.91886	-0.00052951	576.2696806541114	76.274	0.66082	77.015	76.691	77.352	0.74052					26	12	3	0	0	0	0.20451	1	28952	28952		41.956	0	1	5259700			11529	29546	8190	8260	11272	11272					-0.043775446383278904
ELNLGQRK	8	Unmodified	_ELNLGQRK_					0	0	0			REV__ENST00000547048.5_1_12:53861836-53862013:+|nuORF	REV__ENST00000547048.5_1_12:53861836-53862013:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	479.1745300292969	2	479.277441	956.540328	-0.19366	-9.2819E-05	-0.36199	-0.00017349	-0.55565	-0.00026631	479.2771797596836	108.05	1.5806	108.05	106.88	108.46	0					71	30	3	0	0	0	0.68328	1	39708	39708		39.957	5.8549	1	4959400	+		11530	26005	8191	8261	11273	11273					0.060319920203255606
ELNNVRQGI	9	Unmodified	_ELNNVRQGI_					0	0	0		ENSG00000173335|ENST00000376971|CST9	ENSG00000173335|ENST00000376971|CST9	ENSG00000173335|ENST00000376971|CST9	MULTI-SECPEP	A375_MHC_IP_R1	1	522.185302734375	2	521.78563	1041.55671	-0.12917	-6.7401E-05	-0.47525	-0.00024798	-0.60443	-0.00031538	521.7853811457367	38.857	0.66143	38.857	38.475	39.136	0					37	12	5	0	0	0	0.56537	1	13215	13215		29.082	0	1	13604000			11531	7790	8192	8262	11274	11274					0.037590731864384
ELNNYEKIN	9	Unmodified	_ELNNYEKIN_					0	0	0		ENSG00000154646|ENST00000284885|TMPRSS15	ENSG00000154646|ENST00000284885|TMPRSS15	ENSG00000154646|ENST00000284885|TMPRSS15	MSMS	A375_MHC_IP_R1	1	569.1825561523438	2	568.782753	1135.55095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.24	1	125.24	124.74	125.74	0								0	0	0	0.15486	1	47541	47541		14.838	6.245	1				11532	6097	8193	8263	11275	11275					-0.011400701159118398
ELNPKVEMN	9	Unmodified	_ELNPKVEMN_					0	0	0			REV__tr|U7T603|U7T603_FUSNUSerineproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00149PE=4SV=1	REV__tr|U7T603|U7T603_FUSNUSerineproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00149PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	536.7241821289062	2	537.268424	1072.5223	-0.56615	-0.00030417	-2.4676	-0.0013257	-3.0337	-0.0016299	537.2665334567845	70.399	0.61367	70.399	70.135	70.749	0					24	11	3	0	0	0	0.67483	1	25639	25639		20.454	10.38	1	2395000	+		11533	28849	8194	8264	11276	11276					-0.011065110166782688
ELNPSNAIY	9	Unmodified	_ELNPSNAIY_					0	0	0		ENSG00000011485|ENST00000012443|PPP5C	ENSG00000011485|ENST00000012443|PPP5C	ENSG00000011485|ENST00000012443|PPP5C	MULTI-SECPEP	A375_MHC_IP_R1	1	511.15325927734375	2	510.753464	1019.49238	-0.58289	-0.00029772	-0.13127	-6.7047E-05	-0.71417	-0.00036476	510.75334908747334	80.799	0.71146	80.799	80.592	81.303	0					18	13	2	0	0	0	0.67483	1	29538	29538		6.2058	0	1	2251200			11534	1005	8195	8265	11277	11277					-0.01659126690390167
ELNQQLNDL	9	Unmodified	_ELNQQLNDL_					0	0	0		IFNA21|p.T110I|1|0.14|ENSG00000137080|chr9:21166284-21166284|G/A|missense_variant;ENSG00000137080|ENST00000380225|IFNA21	IFNA21|p.T110I|1|0.14|ENSG00000137080|chr9:21166284-21166284|G/A|missense_variant	IFNA21|p.T110I|1|0.14|ENSG00000137080|chr9:21166284-21166284|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	543.6840209960938	2	543.774928	1085.5353	-1.0074	-0.0005478	1.4076	0.00076544	0.40023	0.00021763	544.2769937002632	62.259	0.81039	63.002	62.37	63.18	0.74263					18	15	2	0	0	0	0.75164	1	23542	23542		5.7319	0	1	856140			11535	4858	8196	8266	11278	11278					-0.004043566329528403
ELNRLVLNYL	10	Unmodified	_ELNRLVLNYL_					0	0	0			REV__nc|ENSG00000151553|Q5W0V3-2|FHIP2A	REV__nc|ENSG00000151553|Q5W0V3-2|FHIP2A	MULTI-MSMS	A375_MHC_IP_R1	1	416.977783203125	3	416.243317	1245.70812	-0.0045112	-1.8778E-06	0.24764	0.00010308	0.24313	0.0001012	416.57784214762484	39.777	0.45729	39.777	39.541	39.999	0					18	8	3	0	0	0	0.64017	1	13632	13632		17.863	0.81459	1	4793900	+		11536	19760	8197	8267	11279	11279					0.09509634494270358
ELNYWFRLNNF	11	Unmodified	_ELNYWFRLNNF_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-SECPEP	A375_MHC_IP_R2	2	506.1790771484375	3	505.917493	1514.73065	-0.72047	-0.0003645	-0.21868	-0.00011063	-0.93914	-0.00047513	505.91789527095807	77.095	0.25034	77.838	77.657	77.908	0.74293					6	4	2	0	0	0	1.0004	1	29253	29253		0.40827	0	1	490190	+		11537	20554	8198	8268	11280	11280					-0.006127661080881808
ELNYYELW	8	Unmodified	_ELNYYELW_					0	0	0			REV__ENSG00000075856|ENST00000546815|SART3	REV__ENSG00000075856|ENST00000546815|SART3	MULTI-SECPEP	A375_MHC_IP_R1	1	564.7321166992188	2	565.263665	1128.51278	-0.32799	-0.0001854	-4.0487	-0.0022886	-4.3767	-0.002474	565.2617528185397	79.306	0.61712	79.306	79.111	79.728	0					17	11	2	0	0	0	0.972	1	28891	28891		10.183	6.239	1	1509900	+		11538	16664	8199	8269	11281	11281					-0.04633956030579611
ELPALKPPSP	10	Unmodified	_ELPALKPPSP_					0	0	0		nc|ENSG00000142632|Q8IW93-2|ARHGEF19;ENSG00000142632|ENST00000270747|ARHGEF19	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6409912109375	2	524.8055	1047.59645	-0.2808	-0.00014737	-0.085545	-4.4894E-05	-0.36635	-0.00019226	524.8052660893128	44.31	0.30742	44.31	44.113	44.42	0					9	5	2	0	0	0	0.88918	1	15492	15492		8.7454	2.5396	1	1761000			11539	5320	8200	8270	11282	11282					0.07455200137133033
ELPDILNSL	9	Unmodified	_ELPDILNSL_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.M1167Ffs*18|1|0.44|ENSG00000023516|chr13:42302242-42302251|CTCATGCGAT/-|frameshift_variant;AKAP11|p.E913Rfs*39|1|0.3|ENSG00000023516|chr13:42301482-42301482|G/-|frameshift_variant	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	MULTI-SECPEP	A375_MHC_IP_R1	1	507.1294250488281	2	507.279315	1012.54408	-0.68792	-0.00034897	3.2385	0.0016428	2.5506	0.0012938	507.28005689717713	41.231	0.40683	41.231	41.063	41.47	0					13	7	3	0	0	0	0.73363	1	14179	14179		6.7232	2.3939	1	2169100			11540	1078	8201	8271	11283	11283					0.03830617003529824
ELPEDDANL	9	Unmodified	_ELPEDDANL_					0	0	0		ENST00000495881.1_1_1:156255017-156255866:+|nuORF;ENSG00000163472|ENST00000405535|TMEM79	ENST00000495881.1_1_1:156255017-156255866:+|nuORF	ENST00000495881.1_1_1:156255017-156255866:+|nuORF	MSMS	A375_MHC_IP_R1	1	508.2189636230469	2	508.232561	1014.45057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.476	1	58.476	57.976	58.976	0								0	0	0	0.15283	1	21006	21006		16.942	2.3606	1				11541	6669	8202	8272	11284	11284					-0.05607727169581267
ELPEKIDAVY	10	Unmodified	_ELPEKIDAVY_					0	0	0		nc|ENSG00000087245|P08253-2|MMP2;nc|ENSG00000087245|P08253-3|MMP2;ENSG00000087245|ENST00000219070|MMP2;MMP2|p.E525K|1|0.08|ENSG00000087245|chr16:55497026-55497026|G/A|missense_variant	nc|ENSG00000087245|P08253-2|MMP2	nc|ENSG00000087245|P08253-2|MMP2	MULTI-SECPEP	A375_MHC_IP_R1	1	393.2681884765625	3	392.876411	1175.6074	0.0073177	2.875E-06	2.829	0.0011114	2.8363	0.0011143	392.8780292427845	24.673	0.45564	24.673	24.447	24.903	0					11	8	2	0	0	0	0.83327	1	7039	7039		20.871	3.4285	1	9388800			11542	1864	8203	8273	11285	11285					0.02662557720782388
ELPEWSEKV	9	Unmodified	_ELPEWSEKV_					0	0	0		ENSG00000133104|ENST00000438666|SPART;ENST00000495510.1_1_13:36900679-36920374:-|nuORF	ENSG00000133104|ENST00000438666|SPART	ENSG00000133104|ENST00000438666|SPART	MSMS	A375_MHC_IP_R1	1	558.7081909179688	2	558.782222	1115.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.473	1	39.473	38.973	39.973	0								0	0	0	0.10702	1	13496	13496		39.95	15.929	1				11543	4486	8204	8274	11286	11286					-0.0032628448479954386
ELPFEVKAGF	10	Unmodified	_ELPFEVKAGF_					0	0	0		ENSG00000048707|ENST00000620676|VPS13D;nc|ENSG00000048707|Q5THJ4-2|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	MULTI-SECPEP	A375_MHC_IP_R2	2	568.0895385742188	2	568.802957	1135.59136	-0.30707	-0.00017466	-1.0714	-0.00060939	-1.3784	-0.00078405	569.3033418004841	67.6	0.55965	68.337	68.052	68.612	0.73631					17	10	2	0	0	0	0.83355	1	25569	25569		12.241	0	1	1936800			11544	1216	8205	8275	11287	11287					0.028988962745188473
ELPKAEKW	8	Unmodified	_ELPKAEKW_					0	0	0		ENSG00000240682|ENST00000393295|ISY1;nc|ENSG00000240682|Q9ULR0-2|ISY1;nc|ENSG00000240682|Q9ULR0-1|ISY1	ENSG00000240682|ENST00000393295|ISY1	ENSG00000240682|ENST00000393295|ISY1	MULTI-SECPEP	A375_MHC_IP_R2	2	500.640380859375	2	500.776742	999.538931	-1.0516	-0.00052663	0.015347	7.6854E-06	-1.0363	-0.00051894	500.7768257351087	33.938	0.15306	34.691	34.6	34.753	0.75225					4	2	2	0	0	0	0.95424	1	12176	12176		19.257	8.4331	1	702280			11545	9776	8206	8276	11288	11288					0.03914357931569157
ELPLGHLEGL	10	Unmodified	_ELPLGHLEGL_					0	0	0		ENST00000513442.1_1_5:180338577-180375566:+|nuORF	ENST00000513442.1_1_5:180338577-180375566:+|nuORF	ENST00000513442.1_1_5:180338577-180375566:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	539.166259765625	2	539.300581	1076.58661	-0.82389	-0.00044432	-0.40303	-0.00021735	-1.2269	-0.00066168	539.3006833080753	103.61	0.30575	104.37	104.19	104.5	0.76428					9	5	2	0	0	0	0.52461	1	39242	39242		29.082	0	1	856420			11546	12933	8207	8277	11289	11289					0.05138012131783398
ELPLHPNLF	9	Unmodified	_ELPLHPNLF_					0	0	0			REV__ENSG00000076258|ENST00000367749|FMO4	REV__ENSG00000076258|ENST00000367749|FMO4	MULTI-SECPEP	A375_MHC_IP_R1	1	539.6316528320312	2	540.297842	1078.58113	-0.54005	-0.00029179	-0.13458	-7.2711E-05	-0.67462	-0.0003645	540.2977392797774	72.774	0.86308	72.774	72.372	73.235	0					40	16	4	0	0	0	0.54812	1	26393	26393		20.454	5.6154	1	8803000	+		11547	16671	8208	8278	11290	11290					0.04498333339938654
ELPLKWLMKY	10	Unmodified	_ELPLKWLMKY_					0	0	0			REV__ENSG00000110237|ENST00000263674|ARHGEF17	REV__ENSG00000110237|ENST00000263674|ARHGEF17	MSMS	A375_MHC_IP_R2	2	660.7471313476562	2	660.872859	1319.73117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.412	1	99.172	98.672	99.672	0.75977								0	0	0	0.1552	1	37336	37336		3.9444	0.66309	1		+		11548	17621	8209	8279	11291	11291					0.08408937287390472
ELPLLATRPVY	11	Unmodified	_ELPLLATRPVY_					0	0	0			REV__ENSG00000133246|ENST00000423345|PRAM1	REV__ENSG00000133246|ENST00000423345|PRAM1	MSMS	A375_MHC_IP_R2	2	636.166259765625	2	636.371538	1270.72852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.09	1	106.85	106.35	107.35	0.75977								0	0	0	0.16191	1	40108	40108		8.7454	0	1		+		11549	18713	8210	8280	11292	11292					0.10398805154090951
ELPLPLIIKI	10	Unmodified	_ELPLPLIIKI_					0	0	0		nc|ENSG00000134755|Q02487-2|DSC2;ENSG00000134755|ENST00000280904|DSC2	nc|ENSG00000134755|Q02487-2|DSC2	nc|ENSG00000134755|Q02487-2|DSC2	MULTI-SECPEP	A375_MHC_IP_R1	1	574.7197265625	2	574.886293	1147.75803	-0.35707	-0.00020527	1.6084	0.00092464	1.2513	0.00071937	574.8852630986631	94.827	0.255	94.827	94.752	95.007	0					5	4	2	0	0	0	0.94421	1	34842	34842		1.6526	0	1	848210			11550	4602	8211	8281	11293	11293					0.19006369170233484
ELPPRAVQSP	10	Unmodified	_ELPPRAVQSP_					0	0	0		ENSG00000204334|ENST00000697325|ERICH2	ENSG00000204334|ENST00000697325|ERICH2	ENSG00000204334|ENST00000697325|ERICH2	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6808471679688	2	547.303655	1092.59276	-0.48688	-0.00026647	0.046972	2.5708E-05	-0.4399	-0.00024076	547.3035548338735	33.573	0.45569	33.573	33.342	33.798	0					25	8	4	0	0	0	0.8866	1	10932	10932		14.405	0	1	12458000			11551	9430	8212	8282	11294	11294					0.0501653036328662
ELPQSQPEP	9	Unmodified	_ELPQSQPEP_					0	0	0		ENST00000445317.1_1_1:2984233-2984575:-|nuORF	ENST00000445317.1_1_1:2984233-2984575:-|nuORF	ENST00000445317.1_1_1:2984233-2984575:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	513.1871948242188	2	512.750921	1023.48729	-0.66638	-0.00034169	-0.29317	-0.00015032	-0.95955	-0.00049201	512.75058186725	89.627	0.6131	90.359	90.035	90.648	0.7318					15	11	2	0	0	0	0.51106	1	34190	34190		19.257	1.1106	1	931400			11552	12025	8213	8283	11295	11295					-0.023514305529943158
ELPRDFSY	8	Unmodified	_ELPRDFSY_					0	0	0		RBM17|p.P193S|1|0.07|ENSG00000134453|chr10:6110000-6110000|C/T|missense_variant	RBM17|p.P193S|1|0.07|ENSG00000134453|chr10:6110000-6110000|C/T|missense_variant	RBM17|p.P193S|1|0.07|ENSG00000134453|chr10:6110000-6110000|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	514.2003173828125	2	513.748182	1025.48181	-0.28705	-0.00014747	0.30301	0.00015567	0.015969	8.2041E-06	513.7478969392947	35.754	0.71353	35.754	35.269	35.982	0					22	10	3	0	0	0	0.77603	1	11995	11995		9.3474	9.3474	1	3759800			11553	15269	8214	8284	11296	11296					-0.029911093447935855
ELPSGPSP	8	Unmodified	_ELPSGPSP_					0	0	0			REV__ENST00000528031.1_1_11:75167685-75168798:-|nuORF	REV__ENST00000528031.1_1_11:75167685-75168798:-|nuORF	MSMS	A375_MHC_IP_R1	1	392.1534423828125	2	392.197793	782.381034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.842	1	42.842	42.342	43.342	0								0	0	0	0.16876	1	14864	14864		13.508	0	1		+		11554	25798	8215	8285	11297	11297					-0.01886141327668156
ELPTPRSLPA	10	Unmodified	_ELPTPRSLPA_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MULTI-MSMS	A375_MHC_IP_R1	1	540.799560546875	2	540.806031	1079.59751	-0.61557	-0.00033291	1.5541	0.00084045	0.9385	0.00050754	540.8067254234445	79.613	0.513	79.613	79.47	79.983	0					13	9	2	0	0	0	0.70442	1	29050	29050		16.149	6.0752	1	766350	+		11555	20801	8216	8286	11298	11298					0.060894145060501614
ELPVGPALPKA	11	Unmodified	_ELPVGPALPKA_					0	0	0		nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN;nc|ENSG00000188157|O00468-2|AGRN;ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;ENST00000461111.1_1_1:988956-990358:+|nuORF	nc|ENSG00000188157|O00468-4|AGRN	nc|ENSG00000188157|O00468-4|AGRN	MULTI-MSMS	A375_MHC_IP_R2	2	364.6105041503906	3	364.553492	1090.63865	-0.22401	-8.1664E-05	1.5979	0.00058252	1.3739	0.00050086	364.88828960059175	35.545	0.45616	36.308	36.081	36.537	0.76338					12	8	2	0	0	0	0.72909	1	12874	12874		9.7643	2.1553	1	1026400			11556	14823	8217	8287	11299	11299					0.09695175545516577
ELQANPFYDR	10	Unmodified	_ELQANPFYDR_					0	0	0		ENSG00000123472|ENST00000574428|ATPAF1	ENSG00000123472|ENST00000574428|ATPAF1	ENSG00000123472|ENST00000574428|ATPAF1	MULTI-SECPEP	A375_MHC_IP_R1	1	417.62786865234375	3	418.20341	1251.5884	-0.023502	-9.8286E-06	-0.51849	-0.00021683	-0.54199	-0.00022666	418.2032151396716	28.946	0.30272	28.946	28.795	29.098	0					9	5	2	0	0	0	0.93194	1	9022	9022		1.4551	0	1	1242500			11557	3849	8218	8288	11300	11300					-0.0273297885030388
ELQDGLHCVKT	11	Unmodified	_ELQDGLHCVKT_					0	0	0			REV__ENST00000556911.5_1_14:57710351-57713533:-|nuORF	REV__ENST00000556911.5_1_14:57710351-57713533:-|nuORF	MSMS	A375_MHC_IP_R2	2	621.9820556640625	2	621.810987	1241.60742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.355	1	83.098	82.598	83.598	0.74293								0	0	0	0.16138	1	31284	31284		11.495	0.67078	1		+		11558	16573	8219	8289	11301	11301					-0.003717655509035467
ELQHQLFL	8	Unmodified	_ELQHQLFL_					0	0	0		ENST00000414876.5_1_2:231850605-231851715:-|nuORF	ENST00000414876.5_1_2:231850605-231851715:-|nuORF	ENST00000414876.5_1_2:231850605-231851715:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	514.6821899414062	2	514.282192	1026.54983	-0.61115	-0.0003143	-0.40706	-0.00020934	-1.0182	-0.00052365	514.2821019271119	85.245	0.91745	85.981	85.626	86.543	0.73602					34	17	3	0	0	0	0.70206	1	32386	32386		34.102	3.4659	1	7400800			11559	11672	8220	8290	11302	11302					0.03761760305860662
ELQHQLFL	8	Unmodified	_ELQHQLFL_					0	0	0		ENST00000414876.5_1_2:231850605-231851715:-|nuORF	ENST00000414876.5_1_2:231850605-231851715:-|nuORF	ENST00000414876.5_1_2:231850605-231851715:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	514.282192	1026.54983	-0.71807	-0.00036929	-0.18714	-9.6245E-05	-0.90521	-0.00046553	514.2820754041173	86.286	0.65711	86.286	85.87	86.527	0	0.15298	0.00011723	NaN	34.102	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9469300			11560	11672	8220	8290							0.03761760305860662
ELQHQLFL	8	Unmodified	_ELQHQLFL_					0	0	0		ENST00000414876.5_1_2:231850605-231851715:-|nuORF	ENST00000414876.5_1_2:231850605-231851715:-|nuORF	ENST00000414876.5_1_2:231850605-231851715:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	514.282192	1026.54983	-0.61115	-0.0003143	-0.40706	-0.00020934	-1.0182	-0.00052365	514.2821019271119	85.245	0.91745	85.981	85.626	86.543	0.73602	-0.15298	-0.00010897	NaN	34.102	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7400800			11561	11672	8220	8290							0.03761760305860662
ELQIGSEEF	9	Unmodified	_ELQIGSEEF_					0	0	0		GPRASP1|p.K1150Q|1|0.39|ENSG00000198932|chrX:102657361-102657361|A/C|missense_variant	GPRASP1|p.K1150Q|1|0.39|ENSG00000198932|chrX:102657361-102657361|A/C|missense_variant	GPRASP1|p.K1150Q|1|0.39|ENSG00000198932|chrX:102657361-102657361|A/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	527.184326171875	2	526.250754	1050.48696	-0.6824	-0.00035912	-0.20355	-0.00010712	-0.88596	-0.00046624	526.2506400599673	71.302	1.5175	72.036	71.605	73.122	0.73421					93	29	5	0	0	0	0.29981	1	26885	26885		30.637	6.616	1	271910000			11562	14072	8221	8291	11303	11303					-0.03626850272848969
ELQISIYGVKI	11	Unmodified	_ELQISIYGVKI_					0	0	0		nc|ENSG00000144366|Q9UBP9-2|GULP1;nc|ENSG00000144366|Q9UBP9-4|GULP1;ENSG00000144366|ENST00000409830|GULP1	nc|ENSG00000144366|Q9UBP9-2|GULP1	nc|ENSG00000144366|Q9UBP9-2|GULP1	MULTI-MSMS	A375_MHC_IP_R1	1	421.9170227050781	3	421.583339	1261.72819	-0.031143	-1.3129E-05	0.44512	0.00018765	0.41397	0.00017452	421.5834676998167	68.684	0.86235	68.684	68.361	69.224	0					46	16	5	0	0	0	0.73078	1	24785	24785		4.1166	1.2733	1	21415000			11563	5480	8222	8292	11304	11304					0.10779385434238975
ELQKHIILL	9	Unmodified	_ELQKHIILL_					0	0	0			REV__tr|U7SRI4|U7SRI4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01614PE=4SV=1	REV__tr|U7SRI4|U7SRI4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01614PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	554.2498168945312	2	553.850242	1105.68593	-0.80527	-0.000446	0.1604	8.8839E-05	-0.64487	-0.00035716	553.8501896575928	74.324	0.45872	75.061	74.857	75.315	0.73752					15	8	2	0	0	0	0.63327	1	28257	28257		13.042	0	1	1307000	+		11564	28399	8223	8293	11305	11305					0.13731454816525002
ELQKILAHL	9	Unmodified	_ELQKILAHL_					0	0	0		ENSG00000102385|ENST00000395209|DRP2;nc|ENSG00000102385|Q13474-2|DRP2	ENSG00000102385|ENST00000395209|DRP2	ENSG00000102385|ENST00000395209|DRP2	MULTI-MSMS	A375_MHC_IP_R1	1	355.94140625	3	355.553603	1063.63898	0.19873	7.0661E-05	-0.49872	-0.00017732	-0.29998	-0.00010666	355.5534061616638	35.68	0.76432	35.68	35.269	36.033	0					32	14	3	0	0	0	0.64808	1	11969	11969		7.609	0.97858	1	4639500			11565	2376	8224	8294	11306	11306					0.1097059526537123
ELQKKLLPR	9	Unmodified	_ELQKKLLPR_					0	0	0			REV__nc|ENSG00000177910|B4DYI2|SPATA31C2	REV__nc|ENSG00000177910|B4DYI2|SPATA31C2	MSMS	A375_MHC_IP_R1	1	375.5855407714844	3	375.576519	1123.70773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.3	1	39.3	38.8	39.8	0								0	0	0	0.15486	1	13417	13417		6.6304	2.1015	1		+		11566	27378	8225	8295	11307	11307					0.15082259565087952
ELQKNLFNI	9	Unmodified	_ELQKNLFNI_					0	0	0			REV__ENST00000572253.5_1_17:78055494-78060128:+|nuORF	REV__ENST00000572253.5_1_17:78055494-78060128:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	560.2135009765625	2	559.813856	1117.61316	-0.46308	-0.00025924	0.77212	0.00043224	0.30904	0.00017301	559.8147262647321	89.451	0.81223	89.451	88.867	89.679	0					33	15	3	0	0	0	0.059859	1	32843	32843		71.922	2.8174	1	5334000	+		11567	19275	8226	8296	11308	11308					0.05905701023107213
ELQKNLFNI	9	Unmodified	_ELQKNLFNI_					0	0	0			REV__ENST00000572253.5_1_17:78055494-78060128:+|nuORF	REV__ENST00000572253.5_1_17:78055494-78060128:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	560.213623046875	2	559.813856	1117.61316	-0.58365	-0.00032673	1.0636	0.0005954	0.47992	0.00026866	559.8144115886514	88.677	0.65919	89.408	88.976	89.635	0.7318					32	12	4	0	0	0	0.059859	1	33710	33710		71.922	0	1	3523400	+		11568	19275	8226	8296	11309	11309					0.05905701023107213
ELQLKGNEF	9	Unmodified	_ELQLKGNEF_					0	0	0			REV__tr|U7SZZ4|U7SZZ4_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00754PE=4SV=1	REV__tr|U7SZZ4|U7SZZ4_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00754PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	539.6824951171875	2	539.282389	1076.55022	-0.61009	-0.00032901	-0.070232	-3.7875E-05	-0.68032	-0.00036688	539.2822854298508	102.58	0.70692	102.58	102.2	102.91	0					20	13	2	0	0	0	0.36834	1	37691	37691		26.268	1.2772	1	2027300	+		11569	28659	8227	8297	11310	11310					0.01501135235048423
ELQLKGNEF	9	Unmodified	_ELQLKGNEF_					0	0	0			REV__tr|U7SZZ4|U7SZZ4_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00754PE=4SV=1	REV__tr|U7SZZ4|U7SZZ4_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00754PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	539.282389	1076.55022	-0.61009	-0.00032901	-0.070232	-3.7875E-05	-0.68032	-0.00036688	539.2822854298508	102.58	0.70692	102.58	102.2	102.91	0	0.01722	-0.00010366	NaN	26.268	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2027300	+		11570	28659	8227	8297							0.01501135235048423
ELQLLQHTV	9	Unmodified	_ELQLLQHTV_					0	0	0		ENST00000561071.5_1_14:103871532-103958349:+|nuORF	ENST00000561071.5_1_14:103871532-103958349:+|nuORF	ENST00000561071.5_1_14:103871532-103958349:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	541.2057495117188	2	540.806031	1079.59751	-0.76713	-0.00041487	0.59649	0.00032258	-0.17065	-9.2286E-05	540.8064311848119	87.942	0.50793	88.674	88.367	88.875	0.7318					15	9	2	0	0	0	0.31606	1	33471	33471		26.268	0	1	2552300			11571	13503	8228	8298	11311	11311					0.060894145060501614
ELQNGRRKL	9	Unmodified	_ELQNGRRKL_					0	0	0			REV__ENSG00000062582|ENST00000317534|MRPS24	REV__ENSG00000062582|ENST00000317534|MRPS24	MULTI-SECPEP	A375_MHC_IP_R2	2	372.3009338378906	3	371.887756	1112.64144	0.52747	0.00019616	0.40334	0.00015	0.93081	0.00034616	372.2225996819396	63.97	1.0688	64.71	64.344	65.412	0.74022					29	20	2	0	0	0	0.78351	1	24153	24153		1.0715	0	1	5440400	+		11572	16460	8229	8299	11312	11312					0.08962443723044089
ELQPRRLRWRR	11	Unmodified	_ELQPRRLRWRR_					0	0	0			REV__ENST00000298292.12_1_14:50100549-50100927:-|nuORF	REV__ENST00000298292.12_1_14:50100549-50100927:-|nuORF	MSMS	A375_MHC_IP_R2	2	522.689697265625	3	522.646442	1564.9175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.129	1	53.88	53.38	54.38	0.75105								0	0	0	0.16353	1	20044	20044		0.36667	0.27183	1		+		11573	23400	8230	8300	11313	11313					0.15763315290769242
ELQQAQSEW	9	Unmodified	_ELQQAQSEW_					0	0	0			REV__FRS3|p.G340E|1|0.53|ENSG00000137218|chr6:41771079-41771079|C/T|missense_variant	REV__FRS3|p.G340E|1|0.53|ENSG00000137218|chr6:41771079-41771079|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	372.94134521484375	3	373.508611	1117.504	0.14628	5.4636E-05	-0.49115	-0.00018345	-0.34487	-0.00012881	373.5084163038735	38.901	0.46116	39.675	39.453	39.914	0.77451					10	8	2	0	0	0	0.78348	1	14308	14308		2.4985	0.41248	1	1113300	+		11574	26653	8231	8301	11314	11314					-0.05004929667029501
ELQQIEGEY	9	Unmodified	_ELQQIEGEY_					0	0	0			REV__CGNL1|p.R874Q|1|0.47|ENSG00000128849|chr15:57518403-57518403|G/A|missense_variant	REV__CGNL1|p.R874Q|1|0.47|ENSG00000128849|chr15:57518403-57518403|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	554.7061157226562	2	554.761486	1107.50842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.649	1	83.649	83.149	84.149	0								0	0	0	0.1521	1	30613	30613		18.135	0	1		+		11575	15656	8232	8302	11315	11315					-0.04103465244133986
ELQRIKKEF	9	Unmodified	_ELQRIKKEF_					0	0	0			REV__ENST00000592611.5_1_18:34415331-34809581:+|nuORF	REV__ENST00000592611.5_1_18:34415331-34809581:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	397.626220703125	3	397.567912	1189.68191	-0.078698	-3.1288E-05	0.041024	1.631E-05	-0.037674	-1.4978E-05	397.567853773588	40.726	0.55441	40.726	40.509	41.063	0					24	10	3	0	0	0	0.46465	1	14065	14065		15.739	9.1082	1	9157100	+		11576	19714	8233	8303	11316	11316					0.09465365322807884
ELQRKLQKVRL	11	Unmodified	_ELQRKLQKVRL_					0	0	0			REV__nc|ENSG00000105357|Q7Z406-4|MYH14	REV__nc|ENSG00000105357|Q7Z406-4|MYH14	MSMS	A375_MHC_IP_R1	1	705.8961791992188	2	705.94881	1409.88307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.99	1	118.99	118.49	119.49	0								0	0	0	0.16307	1	43911	43911		2.7352	1.5419	1		+		11577	17374	8234	8304	11317	11317					0.1945205435929438
ELQRKTLFYKF	11	Unmodified	_ELQRKTLFYKF_					0	0	0			REV__nc|ENSG00000147454|Q9NYZ2-4|SLC25A37	REV__nc|ENSG00000147454|Q9NYZ2-4|SLC25A37	MULTI-MSMS	A375_MHC_IP_R2	2	491.67230224609375	3	491.613522	1471.81874	-0.48668	-0.00023926	-0.35382	-0.00017394	-0.8405	-0.0004132	491.6133392407108	78.378	0.81282	79.123	78.778	79.591	0.74474					44	15	4	0	0	0	0.73439	2	29658	29658;29743		4.7159	2.6312	1	24131000	+		11578	19587	8235	8305	11318;11319	11318					0.1016985448250125
ELQRKTLFYKF	11	Unmodified	_ELQRKTLFYKF_					0	0	0			REV__nc|ENSG00000147454|Q9NYZ2-4|SLC25A37	REV__nc|ENSG00000147454|Q9NYZ2-4|SLC25A37	MULTI-SECPEP	A375_MHC_IP_R2	2	492.34747314453125	3	491.613522	1471.81874	-0.48668	-0.00023926	-0.35382	-0.00017394	-0.8405	-0.0004132	491.6133392407108	78.378	0.81282	79.123	78.778	79.591	0.74474					44	15	4	0	0	0	0.99778	1	29718	29718		3.8459	3.8459	1	24131000	+		11579	19587	8235	8305	11320	11320					0.1016985448250125
ELQRRYCI	8	Unmodified	_ELQRRYCI_					0	0	0			REV__nc|ENSG00000167703|Q8N370-4|SLC43A2	REV__nc|ENSG00000167703|Q8N370-4|SLC43A2	MULTI-SECPEP	A375_MHC_IP_R1	1	360.95721435546875	3	360.858809	1079.5546	0.20627	7.4434E-05	0.40872	0.00014749	0.61499	0.00022192	361.19335340864757	43.597	0.40725	43.597	43.4	43.808	0					16	7	3	0	0	0	0.94479	1	15228	15228		14.838	3.3436	1	1192900	+		11580	20786	8236	8306	11321	11321					0.01800321176961006
ELQSQIKKI	9	Unmodified	_ELQSQIKKI_					0	0	0		nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	MULTI-SECPEP	A375_MHC_IP_R2	2	363.597412109375	3	362.888763	1085.64446	-0.374	-0.00013572	1.2071	0.00043805	0.83313	0.00030233	362.88927729237633	33.285	0.25451	34.037	33.891	34.146	0.75225					6	4	2	0	0	0	0.62767	1	11931	11931		7.609	0	1	591130			11581	2013	8237	8307	11322	11322					0.1050627405720661
ELQSVNYRI	9	Unmodified	_ELQSVNYRI_					0	0	0			REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-SECPEP	A375_MHC_IP_R2	2	374.9452209472656	3	374.536501	1120.58767	0.46093	0.00017263	1.6102	0.0006031	2.0712	0.00077573	374.53665496114616	44.076	1.0132	44.845	44.53	45.543	0.7691					38	19	3	0	0	0	0.69381	1	16616	16616		10.8	0	1	6630100	+		11582	22295	8238	8308	11323	11323					0.032202265006844755
ELQTWCREIT	10	Unmodified	_ELQTWCREIT_					0	0	0		ENSG00000161905|ENST00000293761|ALOX15;nc|ENSG00000161905|P16050-2|ALOX15	ENSG00000161905|ENST00000293761|ALOX15	ENSG00000161905|ENST00000293761|ALOX15	MSMS	A375_MHC_IP_R2	2	639.902099609375	2	639.810987	1277.60742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.15	1	125.44	124.94	125.94	0.2951								0	0	0	0.14983	1	48660	48660		18.146	5.9057	1				11583	6491	8239	8309	11324	11324					-0.02027765550883487
ELQWPWGY	8	Unmodified	_ELQWPWGY_					0	0	0		ENST00000308696.10_1_2:232003505-232010972:+|nuORF	ENST00000308696.10_1_2:232003505-232010972:+|nuORF	ENST00000308696.10_1_2:232003505-232010972:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	540.1532592773438	2	539.753267	1077.49198	-0.6108	-0.00032968	1.2406	0.00066962	0.62979	0.00033993	539.7532792142275	79.637	0.76955	79.637	79.161	79.931	0					22	14	2	0	0	0	0.7758	1	29086	29086		10.183	0.83596	1	1373400			11584	10604	8240	8310	11325	11325					-0.04366501619574592
ELQYLNQCQ	9	Unmodified	_ELQYLNQCQ_					0	0	0			REV__nc|ENSG00000080910|P36980-2|CFHR2	REV__nc|ENSG00000080910|P36980-2|CFHR2	MULTI-SECPEP	A375_MHC_IP_R2	2	380.27630615234375	3	380.178096	1137.51246	-0.2755	-0.00010474	-3.1455	-0.0011959	-3.421	-0.0013006	380.1765835561125	23.407	0.45495	24.037	23.828	24.283	0.63015					13	8	2	0	0	0	0.73363	1	7513	7513		4.1895	0.59301	1	1963100	+		11585	16079	8241	8311	11326	11326					-0.05079699022076056
ELQYRIKL	8	Unmodified	_ELQYRIKL_					0	0	0		nc|ENSG00000174678|A6NHR8|FAM47DP	nc|ENSG00000174678|A6NHR8|FAM47DP	nc|ENSG00000174678|A6NHR8|FAM47DP	MULTI-SECPEP	A375_MHC_IP_R2	2	531.697998046875	2	531.818941	1061.62333	-0.65504	-0.00034836	0.17221	9.1585E-05	-0.48283	-0.00025678	531.8188426934761	83.143	0.405	83.883	83.694	84.099	0.73962					17	7	3	0	0	0	0.8957	1	31554	31554		28.487	10.352	1	2197500			11586	14775	8242	8312	11327	11327					0.09498308748334239
ELRAFALGV	9	Unmodified	_ELRAFALGV_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MSMS	A375_MHC_IP_R2	2	488.687255859375	2	488.284734	974.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.901	1	72.636	72.136	73.136	0.73421								0	0	0	0.15283	1	27284	27284		16.942	2.3606	1		+		11587	22046	8243	8313	11328	11328					0.06662064168483539
ELRALRLAAP	10	Unmodified	_ELRALRLAAP_					0	0	0			REV__ENSG00000261594|ENST00000562197|TPBGL	REV__ENSG00000261594|ENST00000562197|TPBGL	MULTI-MSMS	A375_MHC_IP_R1	1	370.5970764160156	3	370.564502	1108.67168	0.39831	0.0001476	-0.21129	-7.8298E-05	0.18702	6.9303E-05	370.5644079632017	28.523	0.50668	28.523	28.238	28.745	0					26	9	4	0	0	0	0.64017	3	8803	8803;8810;8833		17.863	8.3192	1	14953000	+		11588	22912	8244	8314	11329;11330;11331	11329					0.12168802388214317
ELRAVRIQVHQ	11	Unmodified	_ELRAVRIQVHQ_					0	0	0			REV__ENST00000580803.1_1_7:86817463-86822708:+|nuORF	REV__ENST00000580803.1_1_7:86817463-86822708:+|nuORF	MSMS	A375_MHC_IP_R1	1	674.8948364257812	2	674.894035	1347.77352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.05	1	122.05	121.55	122.55	0								0	0	0	0.16209	1	45371	45371		13.615	7.883	1		+		11589	18828	8245	8315	11332	11332					0.11354048739985956
ELRDAWRELRY	11	Unmodified	_ELRDAWRELRY_					0	0	0			REV__ENSG00000198576|ENST00000356613|ARC	REV__ENSG00000198576|ENST00000356613|ARC	MSMS	A375_MHC_IP_R1	1	753.8489379882812	2	753.894232	1505.77391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.65	1	123.65	123.15	124.15	0								0	0	0	0.16273	1	46244	46244		4.5289	0.33936	1		+		11590	22384	8246	8316	11333	11333					0.041254236691884216
ELRDGKIYV	9	Unmodified	_ELRDGKIYV_					0	0	0			REV__ENSG00000131873|ENST00000254190|CHSY1	REV__ENSG00000131873|ENST00000254190|CHSY1	MULTI-SECPEP	A375_MHC_IP_R2	2	547.2062377929688	2	546.806031	1091.59751	-0.73458	-0.00040167	0.33599	0.00018372	-0.39859	-0.00021795	546.8060391486894	73.533	0.50938	74.268	73.887	74.396	0.73541					12	9	2	0	0	0	0.59098	1	27934	27934		16.149	3.1066	1	1732200	+		11591	18625	8247	8317	11334	11334					0.05537414506034111
ELREKFEFL	9	Unmodified	_ELREKFEFL_					0	0	0			REV__tr|U7T226|U7T226_FUSNUEthanolamineutilizationproteinEutAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00820PE=4SV=1	REV__tr|U7T226|U7T226_FUSNUEthanolamineutilizationproteinEutAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00820PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	405.28033447265625	3	404.220401	1209.63937	0.1561	6.3098E-05	0.70371	0.00028446	0.85981	0.00034755	404.2212824005052	43.522	0.70878	44.294	43.724	44.433	0.7724					41	13	4	0	0	0	0.62591	1	16037	16037		13.615	1.4401	1	3336800	+		11592	28717	8248	8318	11335	11335					0.04293970194589747
ELRELAESW	9	Unmodified	_ELRELAESW_					0	0	0		ENST00000555759.1_1_14:95904955-95916441:-|nuORF;nc|ENSG00000176438|Q6ZMZ3-2|SYNE3;ENSG00000176438|ENST00000682763|SYNE3	ENST00000555759.1_1_14:95904955-95916441:-|nuORF	ENST00000555759.1_1_14:95904955-95916441:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	567.1854248046875	2	566.785296	1131.55604	-0.71413	-0.00040476	0.14557	8.2508E-05	-0.56855	-0.00032225	566.7852235152744	61.318	0.50343	62.063	61.869	62.372	0.74504					14	8	2	0	0	0	0.28216	1	23240	23240		41.84	3.8656	1	3076600			11593	8022	8249	8319	11336	11336					-0.004477662532735849
ELRFAIQNK	9	Unmodified	_ELRFAIQNK_					0	0	0		nc|ENSG00000162772|P18847-4|ATF3;nc|ENSG00000162772|P18847-2|ATF3;nc|ENSG00000162772|P18847-3|ATF3;ENST00000465155.5_1_1:212782186-212791588:+|nuORF;ENSG00000162772|ENST00000341491|ATF3	nc|ENSG00000162772|P18847-4|ATF3	nc|ENSG00000162772|P18847-4|ATF3	MULTI-SECPEP	A375_MHC_IP_R1	1	373.94866943359375	3	373.548741	1117.62439	0.24427	9.1248E-05	-0.061074	-2.2814E-05	0.1832	6.8434E-05	373.54867753442005	52.547	0.91335	52.547	52.336	53.25	0					27	17	2	0	0	0	0.77396	1	18683	18683		3.8763	0	1	9672000			11594	6593	8250	8320	11337	11337					0.07028523117219265
ELRFKQYL	8	Unmodified	_ELRFKQYL_					0	0	0		nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1;nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1;nc|ENSG00000160691|P29353-5|SHC1;ENST00000590113.4_1_19:435948-439002:-|nuORF;SHC3|p.H365Pfs*4|1|0.56|ENSG00000148082|chr9:89046863-89046864|-/G|frameshift_variant;nc|ENSG00000185634|Q6S5L8-2|SHC4;nc|ENSG00000148082|Q92529-2|SHC3;ENSG00000148082|ENST00000375835|SHC3;ENSG00000185634|ENST00000332408|SHC4;ENSG00000129946|ENST00000264554|SHC2	nc|ENSG00000160691|P29353-3|SHC1;ENSG00000129946|ENST00000264554|SHC2	nc|ENSG00000160691|P29353-3|SHC1	MULTI-SECPEP	A375_MHC_IP_R2	2	549.2103271484375	2	548.811116	1095.60768	-0.84731	-0.00046502	0.22176	0.0001217	-0.62555	-0.00034331	548.8110127180049	97.957	0.61039	98.717	98.385	98.995	0.75977					21	11	3	0	0	0	0.92867	1	37164	37164		23.148	8.5667	1	3321000			11595	6433;4215	8251	8321	11338	11338					0.0637002223129457
ELRGRQPEF	9	Unmodified	_ELRGRQPEF_					0	0	0			REV__ENST00000252506.10_1_9:92220779-92220957:+|nuORF	REV__ENST00000252506.10_1_9:92220779-92220957:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	378.6280212402344	3	377.868362	1130.58326	0.054358	2.054E-05	-0.21757	-8.2214E-05	-0.16322	-6.1674E-05	377.868226533179	26.008	0.55636	26.008	25.765	26.322	0					14	10	2	0	0	0	0.71071	1	7748	7748		10.315	1.339	1	2984800	+		11596	23128	8252	8322	11339	11339					0.023187620777662232
ELRIKWDK	8	Unmodified	_ELRIKWDK_					0	0	0		ACTN2|p.T609I|1|0.16|ENSG00000077522|chr1:236751639-236751639|C/T|missense_variant	ACTN2|p.T609I|1|0.16|ENSG00000077522|chr1:236751639-236751639|C/T|missense_variant	ACTN2|p.T609I|1|0.16|ENSG00000077522|chr1:236751639-236751639|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	362.960693359375	3	363.213469	1086.61858	-0.61905	-0.00022485	0.076176	2.7668E-05	-0.54288	-0.00019718	363.2133229318925	53.501	0.30688	54.252	54.147	54.454	0.75105					8	5	2	0	0	0	0.972	1	20155	20155		6.2058	0	1	547840			11597	39	8253	8323	11340	11340					0.07873424605554646
ELRIQRYLEGS	11	Unmodified	_ELRIQRYLEGS_					0	0	0		ENSG00000124587|ENST00000304611|PEX6;nc|ENSG00000124587|Q13608-2|PEX6	ENSG00000124587|ENST00000304611|PEX6;nc|ENSG00000124587|Q13608-2|PEX6	ENSG00000124587|ENST00000304611|PEX6	MULTI-MSMS	A375_MHC_IP_R2	2	455.6340637207031	3	455.249131	1362.72556	-0.52702	-0.00023993	-0.20925	-9.526E-05	-0.73627	-0.00033519	455.2489737902963	20.036	0.55794	20.646	20.349	20.907	0.61029					32	10	4	0	0	0	0.72934	1	6248	6248		9.5301	1.322	1	4481300			11598	3917;14577	8254	8324	11341	11341					0.05870930029300325
ELRITNQV	8	Unmodified	_ELRITNQV_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	A375_MHC_IP_R1	1	486.2001037597656	2	486.777274	971.539994	-0.13257	-6.4532E-05	0.32335	0.0001574	0.19078	9.2865E-05	486.77721708672834	43.425	0.25252	43.425	43.3	43.553	0					5	4	2	0	0	0	0.8824	1	15051	15051		30.225	15.387	1	520340			11599	9114	8255	8325	11342	11342					0.053085723004642205
ELRKNESNW	9	Unmodified	_ELRKNESNW_					0	0	0		GIMAP5|p.E262K|1|0.16|ENSG00000196329|chr7:150742923-150742923|G/A|missense_variant	GIMAP5|p.E262K|1|0.16|ENSG00000196329|chr7:150742923-150742923|G/A|missense_variant	GIMAP5|p.E262K|1|0.16|ENSG00000196329|chr7:150742923-150742923|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	392.93145751953125	3	392.531638	1174.57309	0.2097	8.2314E-05	-0.56724	-0.00022266	-0.35754	-0.00014034	392.53133400193497	28.617	0.40609	28.617	28.339	28.745	0					10	7	2	0	0	0	0.28079	1	8847	8847		32.037	13.664	1	3821300			11600	14048	8256	8326	11343	11343					-0.007218456474902268
ELRKNESNW	9	Unmodified	_ELRKNESNW_					0	0	0		GIMAP5|p.E262K|1|0.16|ENSG00000196329|chr7:150742923-150742923|G/A|missense_variant	GIMAP5|p.E262K|1|0.16|ENSG00000196329|chr7:150742923-150742923|G/A|missense_variant	GIMAP5|p.E262K|1|0.16|ENSG00000196329|chr7:150742923-150742923|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	392.531638	1174.57309	0.2097	8.2314E-05	-0.56724	-0.00022266	-0.35754	-0.00014034	392.53133400193497	28.617	0.40609	28.617	28.339	28.745	0	0.078025	-0.00037746	NaN	32.037	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3821300			11601	14048	8256	8326							-0.007218456474902268
ELRKRWIHQLK	11	Unmodified	_ELRKRWIHQLK_					0	0	0		ENSG00000010671|ENST00000308731|BTK;nc|ENSG00000010671|Q06187-2|BTK	ENSG00000010671|ENST00000308731|BTK	ENSG00000010671|ENST00000308731|BTK	MULTI-SECPEP	A375_MHC_IP_R2	2	377.8804931640625	4	377.480852	1505.8943	0.073599	2.7782E-05	-0.80628	-0.00030436	-0.73268	-0.00027657	377.4804378180883	32.959	0.81397	33.696	33.367	34.181	0.73692					30	15	3	0	0	0	0.99647	1	11791	11791		1.7824	1.4157	1	3317500			11602	985	8257	8327	11344	11344					0.16158876453437188
ELRLNEMERL	10	Unmodified	_ELRLNEMERL_					0	0	0			REV__nc|ENSG00000163808|Q9NS87-3|KIF15	REV__nc|ENSG00000163808|Q9NS87-3|KIF15	MULTI-SECPEP	A375_MHC_IP_R2	2	434.1417236328125	3	434.899333	1301.67617	-0.57736	-0.0002511	-1.979	-0.00086065	-2.5563	-0.0011117	434.8981224565866	38.741	0.155	39.516	39.401	39.556	0.77451					4	2	2	0	0	0	0.93578	1	14287	14287		3.3196	0.47636	1	667700	+		11603	20413	8258	8328	11345	11345					0.03739898748813175
ELRLQRDDF	9	Unmodified	_ELRLQRDDF_					0	0	0		ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	MULTI-SECPEP	A375_MHC_IP_R2	2	397.6519775390625	3	397.875405	1190.60439	-0.036236	-1.4417E-05	1.3082	0.0005205	1.272	0.00050608	398.2114930148734	48.355	0.30123	49.112	48.879	49.18	0.75737					7	5	2	0	0	0	0.77003	1	18091	18091		4.5289	3.4574	1	1127500			11604	7584	8259	8329	11346	11346					0.0167072738661318
ELRMQPEV	8	Unmodified	_ELRMQPEV_					0	0	0			REV__ENST00000406451.8_1_7:18875165-18875553:+|nuORF	REV__ENST00000406451.8_1_7:18875165-18875553:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	501.6422424316406	2	501.257859	1000.50117	-0.82538	-0.00041373	0.67276	0.00033723	-0.15262	-7.6502E-05	501.257800396927	72.004	0.86208	72.738	72.414	73.276	0.73421					30	16	3	0	0	0	0.8824	1	27196	27196		30.225	16.717	1	1774800	+		11605	24445	8260	8330	11347	11347					0.0009352367445671916
ELRNKAGP	8	Unmodified	_ELRNKAGP_					0	0	0			REV__tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	REV__tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	443.15106201171875	2	442.751059	883.487565	0.31006	0.00013728	-0.33323	-0.00014754	-0.023169	-1.0258E-05	442.75093940903804	48.459	0.70901	48.459	48.173	48.882	0					29	13	3	0	0	0	0.94479	1	17078	17078		8.5933	0	1	10587000	+		11606	28777	8261	8331	11348	11348					0.04116033957518539
ELRNTIEY	8	Unmodified	_ELRNTIEY_					0	0	0		tr|U7SSA3|U7SSA3_FUSNUSigma-54factorinteractiondomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01556PE=4SV=1	tr|U7SSA3|U7SSA3_FUSNUSigma-54factorinteractiondomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01556PE=4SV=1	tr|U7SSA3|U7SSA3_FUSNUSigma-54factorinteractiondomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01556PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	519.9862060546875	2	519.266739	1036.51892	-0.63642	-0.00033047	0.079552	4.1309E-05	-0.55687	-0.00028916	519.2667309349789	65.495	0.61362	65.495	65.206	65.819	0					18	11	2	0	0	0	0.94479	1	23653	23653		8.5933	0	1	1744700			11607	29626	8262	8332	11349	11349					0.002125622009543804
ELRPKWSLQ	9	Unmodified	_ELRPKWSLQ_					0	0	0		ENST00000324871.11_1_12:58164900-58164960:-|nuORF	ENST00000324871.11_1_12:58164900-58164960:-|nuORF	ENST00000324871.11_1_12:58164900-58164960:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	386.62030029296875	3	386.220624	1155.64004	-0.45679	-0.00017642	0.177	6.8361E-05	-0.27979	-0.00010806	386.2206498104826	23.223	0.40747	23.853	23.521	23.928	0.63014					12	7	2	0	0	0	0.63448	1	7445	7445		12.856	2.5407	1	5708600			11608	10720	8263	8333	11350	11350					0.06844809634299054
ELRPRAPPR	9	Unmodified	_ELRPRAPPR_					0	0	0			REV__ENSG00000148384|ENST00000371712|INPP5E	REV__ENSG00000148384|ENST00000371712|INPP5E	MSMS	A375_MHC_IP_R1	1	364.6026306152344	3	364.552597	1090.63596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.415	1	40.415	39.915	40.915	0								0	0	0	0.15486	1	13887	13887		8.9762	0	1		+		11609	19627	8264	8334	11351	11351					0.09426764931231446
ELRPWLTL	8	Unmodified	_ELRPWLTL_					0	0	0			REV__ENST00000336967.7_1_19:54378000-54378504:+|nuORF	REV__ENST00000336967.7_1_19:54378000-54378504:+|nuORF	MSMS	A375_MHC_IP_R2	2	514.22412109375	2	514.300384	1026.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.794	1	76.535	76.035	77.035	0.74052								0	0	0	0.16876	1	28771	28771		8.5933	0.68312	1		+		11610	23685	8265	8335	11352	11352					0.07398637202550162
ELRQLRRRWFH	11	Unmodified	_ELRQLRRRWFH_					0	0	0		ENSG00000179314|ENST00000317744|WSCD1	ENSG00000179314|ENST00000317744|WSCD1	ENSG00000179314|ENST00000317744|WSCD1	MSMS	A375_MHC_IP_R1	1	798.95556640625	2	798.95275	1595.89095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.94	1	136.94	136.44	137.44	0								0	0	0	0.16353	1	52732	52732		0.35063	0.35063	1				11611	8221	8266	8336	11353	11353					0.11683626399440072
ELRQLRRRWFH	11	Unmodified	_ELRQLRRRWFH_					0	0	0		ENSG00000179314|ENST00000317744|WSCD1	ENSG00000179314|ENST00000317744|WSCD1	ENSG00000179314|ENST00000317744|WSCD1	MSMS	A375_MHC_IP_R2	2	798.860107421875	2	798.95275	1595.89095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.09	1	134.25	133.75	134.75	0.16487								0	0	0	0.16334	1	52750	52750		1.3295	1.0225	1				11612	8221	8266	8336	11354	11354					0.11683626399440072
ELRQRKKP	8	Unmodified	_ELRQRKKP_					0	0	0		ENSG00000156162|ENST00000414645|DPY19L4;DPY19L4|p.I297Rfs*11|1|0.03|ENSG00000156162|chr8:94765200-94765242|AATCTACATATTTTCCCTCTTTCTGGGATATTTACTACAGTTT/-|frameshift_variant	ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	MSMS	A375_MHC_IP_R2	2	528	2	527.827632	1053.64071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.253	1	75.99	75.49	76.49	0.73752								0	0	0	0.16876	1	28563	28563		8.5933	3.8373	1				11613	795	8267	8337	11355	11355					0.11603649074004352
ELRRELEEL	9	Unmodified	_ELRRELEEL_					0	0	0		ENSG00000076604|ENST00000262395|TRAF4	ENSG00000076604|ENST00000262395|TRAF4	ENSG00000076604|ENST00000262395|TRAF4	MULTI-MSMS	A375_MHC_IP_R1	1	396.61895751953125	3	396.21906	1185.63535	-0.10542	-4.1771E-05	-0.062142	-2.4622E-05	-0.16757	-6.6393E-05	396.2190351151722	46.396	0.40147	46.396	46.144	46.545	0					17	7	3	0	0	0	0.64945	1	16318	16318		11.518	3.0736	1	2402000			11614	1637	8268	8338	11356	11356					0.04995880700857924
ELRRELEEL	9	Unmodified	_ELRRELEEL_					0	0	0		ENSG00000076604|ENST00000262395|TRAF4	ENSG00000076604|ENST00000262395|TRAF4	ENSG00000076604|ENST00000262395|TRAF4	MULTI-MSMS	A375_MHC_IP_R2	2	396.61871337890625	3	396.21906	1185.63535	-0.15549	-6.161E-05	0.06615	2.621E-05	-0.089344	-3.54E-05	396.21896559708546	45.464	0.45471	46.229	46.048	46.503	0.76519					17	8	3	0	0	0	0.23226	2	17006	16942;17006		35.612	9.5916	1	2289500			11615	1637	8268	8338	11357;11358	11358					0.04995880700857924
ELRRELHQYP	10	Unmodified	_ELRRELHQYP_					0	0	0		tr|U7SJS3|U7SJS3_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02071PE=4SV=1	tr|U7SJS3|U7SJS3_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02071PE=4SV=1	tr|U7SJS3|U7SJS3_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02071PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	671.2554931640625	2	670.857118	1339.69968	-0.80904	-0.00054275	-2.6341	-0.0017671	-3.4432	-0.0023099	671.3562940050247	68.442	0.50806	68.442	68.209	68.717	0					16	9	2	0	0	0	0.8528	1	24832	24832		16.149	6.0752	1	1591200			11616	29464	8269	8339	11359	11359					0.043420805776577254
ELRRKDSF	8	Unmodified	_ELRRKDSF_					0	0	0			REV__nc|ENSG00000137807|Q02241-2|KIF23	REV__nc|ENSG00000137807|Q02241-2|KIF23	MULTI-SECPEP	A375_MHC_IP_R1	1	351.260986328125	3	350.861207	1049.56179	-0.58478	-0.00020518	-0.045462	-1.5951E-05	-0.63025	-0.00022113	350.86110588988305	29.494	0.30416	29.494	29.302	29.607	0					12	5	3	0	0	0	0.92636	1	9299	9299		13.042	0	1	12619000	+		11617	15713	8270	8340	11360	11360					0.03899377049060604
ELRRKKRSRRH	11	Unmodified	_ELRRKKRSRRH_					0	0	0			REV__nc|ENSG00000177679|A6NNA2|SRRM3	REV__nc|ENSG00000177679|A6NNA2|SRRM3	MULTI-MSMS	A375_MHC_IP_R1	1	381.6387634277344	4	381.238187	1520.92364	0.69707	0.00026575	1.1196	0.00042684	1.8167	0.00069259	381.23852784350396	22.209	0.50748	22.209	21.962	22.469	0					17	9	3	0	0	0	0.73891	1	5963	5963		0.40827	0.078994	1	1859000	+		11618	21467	8271	8341	11361	11361					0.18401833522284505
ELRRRWHRWRL	11	Unmodified	_ELRRRWHRWRL_					0	0	0		ENSG00000215644|ENST00000400723|GCGR	ENSG00000215644|ENST00000400723|GCGR	ENSG00000215644|ENST00000400723|GCGR	MSMS	A375_MHC_IP_R1	1	832.3564453125	2	832.479466	1662.94438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.84	1	120.84	120.34	121.34	0								0	0	0	0.1636	1	44812	44812		0	0	1				11619	9648	8272	8342	11362	11362					0.1394242390197178
ELRRSLSLW	9	Unmodified	_ELRRSLSLW_					0	0	0		ENST00000526246.5_1_11:66099749-66102792:-|nuORF;nc|ENSG00000174791|Q13671-2|RIN1;ENSG00000174791|ENST00000311320|RIN1	ENST00000526246.5_1_11:66099749-66102792:-|nuORF	ENST00000526246.5_1_11:66099749-66102792:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	387.6239929199219	3	387.224257	1158.65094	-0.042561	-1.6481E-05	-0.21385	-8.2808E-05	-0.25641	-9.9288E-05	387.22413366348565	44.239	0.60742	45.008	44.732	45.34	0.76909					23	11	3	0	0	0	0.54799	1	16492	16492		17.443	3.0373	1	5753400			11620	7901	8273	8343	11363	11363					0.07796212008588554
ELRRSLSLW	9	Unmodified	_ELRRSLSLW_					0	0	0		ENST00000526246.5_1_11:66099749-66102792:-|nuORF;nc|ENSG00000174791|Q13671-2|RIN1;ENSG00000174791|ENST00000311320|RIN1	ENST00000526246.5_1_11:66099749-66102792:-|nuORF	ENST00000526246.5_1_11:66099749-66102792:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	387.224257	1158.65094	0.74293	0.00028768	-0.61404	-0.00023777	0.12889	4.991E-05	387.2239899333509	45.012	0.65651	45.012	44.827	45.484	0	0.001758	-0.00020618	NaN	17.443	23	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6482400			11621	7901	8273	8343							0.07796212008588554
ELRRSLSLW	9	Unmodified	_ELRRSLSLW_					0	0	0		ENST00000526246.5_1_11:66099749-66102792:-|nuORF;nc|ENSG00000174791|Q13671-2|RIN1;ENSG00000174791|ENST00000311320|RIN1	ENST00000526246.5_1_11:66099749-66102792:-|nuORF	ENST00000526246.5_1_11:66099749-66102792:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	387.224257	1158.65094	-0.042561	-1.6481E-05	-0.21385	-8.2808E-05	-0.25641	-9.9288E-05	387.22413366348565	44.239	0.60742	45.008	44.732	45.34	0.76909	-0.001758	0.00025871	NaN	17.443	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5753400			11622	7901	8273	8343							0.07796212008588554
ELRSITLTF	9	Unmodified	_ELRSITLTF_					0	0	0			REV__nc|ENSG00000239951|P01619|IGKV3-20	REV__nc|ENSG00000239951|P01619|IGKV3-20	MULTI-SECPEP	A375_MHC_IP_R1	1	540.7080078125	2	540.308406	1078.60226	-0.56212	-0.00030372	-0.64992	-0.00035116	-1.212	-0.00065488	540.308307273022	96.802	0.76044	96.802	96.427	97.187	0					29	14	3	0	0	0	0.31606	1	35540	35540		32.786	10.049	1	2447000	+		11623	27464	8274	8344	11364	11364					0.06610298648797652
ELRSITLTF	9	Unmodified	_ELRSITLTF_					0	0	0			REV__nc|ENSG00000239951|P01619|IGKV3-20	REV__nc|ENSG00000239951|P01619|IGKV3-20	MULTI-SECPEP	A375_MHC_IP_R2	2	540.7078247070312	2	540.308406	1078.60226	-0.75001	-0.00040524	-0.18028	-9.7405E-05	-0.93029	-0.00050264	540.3083968157839	95.828	0.76189	96.578	96.195	96.957	0.75045					28	14	3	0	0	0	0.46045	1	36368	36368		29.082	3.6823	1	2860300	+		11624	27464	8274	8344	11365	11365					0.06610298648797652
ELRTCIDIK	9	Unmodified	_ELRTCIDIK_					0	0	0			REV__nc|ENSG00000234616|O75564|JRK	REV__nc|ENSG00000234616|O75564|JRK	MULTI-MSMS	A375_MHC_IP_R1	1	364.6019592285156	3	364.202353	1089.58523	0.053018	1.9309E-05	-0.7189	-0.00026182	-0.66588	-0.00024251	364.20203188301423	24.44	0.25137	24.44	24.296	24.547	0					9	4	3	0	0	0	0.58268	1	6967	6967		15.739	1.5205	1	2708300	+		11625	22753	8275	8345	11366	11366					0.0440205477134441
ELRTCIDIK	9	Unmodified	_ELRTCIDIK_					0	0	0			REV__nc|ENSG00000234616|O75564|JRK	REV__nc|ENSG00000234616|O75564|JRK	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	364.202353	1089.58523	0.053018	1.9309E-05	-0.7189	-0.00026182	-0.66588	-0.00024251	364.20203188301423	24.44	0.25137	24.44	24.296	24.547	0	0.01364	-0.00011067	NaN	15.739	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2708300	+		11626	22753	8275	8345							0.0440205477134441
ELRTVTEKIY	10	Unmodified	_ELRTVTEKIY_					0	0	0		nc|ENSG00000135248|Q96KD3-3|GARIN1B	nc|ENSG00000135248|Q96KD3-3|GARIN1B	nc|ENSG00000135248|Q96KD3-3|GARIN1B	MULTI-MSMS	A375_MHC_IP_R1	1	418.3031005859375	3	417.902961	1250.68705	0.16361	6.8375E-05	-0.179	-7.4804E-05	-0.015386	-6.4297E-06	417.902859805863	55	0.35531	55	54.771	55.126	0					10	6	2	0	0	0	0.7086	1	19693	19693		8.4443	1.4072	1	2037200			11627	14616	8276	8346	11367	11367					0.07173624394795297
ELRVAHCCL	9	Unmodified	_ELRVAHCCL_					0	0	0		CENPE|p.K1480R|1|0.41|ENSG00000138778|chr4:103145656-103145656|T/C|missense_variant	CENPE|p.K1480R|1|0.41|ENSG00000138778|chr4:103145656-103145656|T/C|missense_variant	CENPE|p.K1480R|1|0.41|ENSG00000138778|chr4:103145656-103145656|T/C|missense_variant	MSMS	A375_MHC_IP_R1	1	522.2161254882812	2	522.259879	1042.50521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.521	1	54.521	54.021	55.021	0								0	0	0	0.1521	1	19471	19471		18.146	1.2041	1				11628	361	8277	8347	11368	11368					-0.014347101034900334
ELRWMHAD	8	Unmodified	_ELRWMHAD_					0	0	0			REV__XYLT1|p.G479E|1|0.41|ENSG00000103489|chr16:17141304-17141304|C/T|missense_variant	REV__XYLT1|p.G479E|1|0.41|ENSG00000103489|chr16:17141304-17141304|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	352.9776611328125	3	353.167643	1056.4811	-0.24985	-8.8239E-05	0.35474	0.00012528	0.10489	3.7043E-05	353.16764264568974	27.771	0.35303	27.771	27.634	27.987	0					10	6	2	0	0	0	0.972	1	8468	8468		1.3295	1.3295	1	1374800	+		11629	29007	8278	8348	11369	11369					-0.04488227265505884
ELRWREWSKR	10	Unmodified	_ELRWREWSKR_					0	0	0			REV__ENSG00000112164|ENST00000373256|GLP1R	REV__ENSG00000112164|ENST00000373256|GLP1R	MULTI-MSMS	A375_MHC_IP_R1	1	362.9689636230469	4	362.199468	1444.76877	0.075903	2.7492E-05	-0.14628	-5.2982E-05	-0.070375	-2.549E-05	362.19943382909963	19.603	0.96397	19.603	19.268	20.232	0					53	18	4	0	0	0	0.72014	1	4788	4788		1.5923	0.26264	1	8171100	+		11630	17712	8279	8349	11370	11370					0.06417164597201008
ELRWVVTV	8	Unmodified	_ELRWVVTV_					0	0	0			REV__ENST00000263116.6_1_22:23503758-23504220:+|nuORF	REV__ENST00000263116.6_1_22:23503758-23504220:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	500.7076110839844	2	501.292559	1000.57057	-0.52848	-0.00026492	-0.34364	-0.00017226	-0.87212	-0.00043719	501.292337723181	64.405	1.1706	65.145	64.648	65.819	0.74022					52	22	4	0	0	0	0.16604	1	24399	24399		68.081	0	1	22486000	+		11631	23219	8280	8350	11371	11371					0.07030350685533904
ELRYNEMDNLW	11	Unmodified	_ELRYNEMDNLW_					0	0	0			REV__ENSG00000074855|ENST00000159087|ANO8	REV__ENSG00000074855|ENST00000159087|ANO8	MULTI-MSMS	A375_MHC_IP_R1	1	495.2933349609375	3	494.894248	1481.66091	-0.48173	-0.0002384	-0.1935	-9.5761E-05	-0.67522	-0.00033416	494.894036603145	46.649	0.80979	46.649	46.245	47.055	0					36	15	3	0	0	0	0.73472	1	16400	16400		4.4062	2.1534	1	4031500	+		11632	16644	8281	8351	11372	11372					-0.06065012839007977
ELRYNEMDNLW	11	Unmodified	_ELRYNEMDNLW_					0	0	0			REV__ENSG00000074855|ENST00000159087|ANO8	REV__ENSG00000074855|ENST00000159087|ANO8	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	494.894248	1481.66091	-0.43253	-0.00021405	-0.038728	-1.9166E-05	-0.47125	-0.00023322	494.89414645120615	46.015	0.85565	46.78	46.303	47.159	0.76519	0.065493	7.4682E-05	NaN	4.4062	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5340800	+		11633	16644	8281	8351							-0.06065012839007977
ELSCRQTFAKN	11	Unmodified	_ELSCRQTFAKN_					0	0	0			REV__nc|ENSG00000125850|Q9BRP0-2|OVOL2	REV__nc|ENSG00000125850|Q9BRP0-2|OVOL2	MSMS	A375_MHC_IP_R1	1	433.28515625	3	432.883683	1295.62922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.64	1	105.64	105.14	106.14	0								0	0	0	0.16297	1	38781	38781		1.3296	0	1		+		11634	18370	8282	8352	11373	11373					-0.006769608023205365
ELSDEDDEV	9	Unmodified	_ELSDEDDEV_					0	0	0		nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;nc|ENSG00000135679|Q00987-5|MDM2;nc|ENSG00000135679|Q00987-9|MDM2;nc|ENSG00000135679|Q00987-2|MDM2;nc|ENSG00000135679|Q00987-8|MDM2	nc|ENSG00000135679|Q00987-10|MDM2	nc|ENSG00000135679|Q00987-10|MDM2	MULTI-SECPEP	A375_MHC_IP_R2	2	526.10888671875	2	525.709116	1049.40368	-0.37471	-0.00019699	1.0026	0.00052706	0.62785	0.00033007	525.7097378877065	90.366	0.86346	91.099	90.649	91.512	0.7327					28	16	2	0	0	0	0.71541	1	34399	34399		11.64	0	1	2422300			11635	4705	8283	8353	11374	11374					-0.11904631511379193
ELSDFSQEF	9	Unmodified	_ELSDFSQEF_					0	0	0		POLRMT|p.P1021S|1|0.31|ENSG00000099821|chr19:619591-619591|G/A|missense_variant	POLRMT|p.P1021S|1|0.31|ENSG00000099821|chr19:619591-619591|G/A|missense_variant	POLRMT|p.P1021S|1|0.31|ENSG00000099821|chr19:619591-619591|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	551.2445678710938	2	551.240386	1100.46622	-0.82122	-0.00045269	-0.81079	-0.00044694	-1.632	-0.00089963	551.2402441434434	75.181	0.45491	75.919	75.671	76.126	0.73752					11	8	2	0	0	0	0.27715	1	28540	28540		32.305	4.6767	1	856230			11636	15208	8284	8354	11375	11375					-0.07999440652520207
ELSDLKKHL	9	Unmodified	_ELSDLKKHL_					0	0	0		ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MULTI-SECPEP	A375_MHC_IP_R1	1	541.1099243164062	2	541.813856	1081.61316	-0.50148	-0.00027171	2.791	0.0015122	2.2896	0.0012405	541.8150099635316	88.624	0.35584	88.624	88.358	88.714	0					11	6	2	0	0	0	0.58271	1	32559	32559		20.454	5.6154	1	2390400			11637	1572	8285	8355	11376	11376					0.0756170102310989
ELSEKNFQL	9	Unmodified	_ELSEKNFQL_					0	0	0		ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	MULTI-SECPEP	A375_MHC_IP_R1	1	554.6874389648438	2	554.287671	1106.56079	-0.54871	-0.00030414	-2.5622	-0.0014202	-3.1109	-0.0017243	554.2877276917472	63.922	1.0686	63.922	63.274	64.343	0					31	20	3	0	0	0	0.13064	1	23108	23108		65.235	43.698	1	2069800			11638	4470	8286	8356	11377	11377					0.011771178894832701
ELSEKNFQL	9	Unmodified	_ELSEKNFQL_					0	0	0		ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	MULTI-SECPEP	A375_MHC_IP_R2	2	554.6873779296875	2	554.287671	1106.56079	-0.73032	-0.00040481	-2.4601	-0.0013636	-3.1904	-0.0017684	554.288020667374	63.172	0.7597	63.914	63.484	64.244	0.74263					36	14	4	0	0	0	0.39388	1	23996	23996		25.399	8.457	1	2725200			11639	4470	8286	8356	11378	11378					0.011771178894832701
ELSEPTLTW	9	Unmodified	_ELSEPTLTW_					0	0	0			REV__PCYT1B|p.F157S|1|0.96|ENSG00000102230|chrX:24590039-24590039|A/G|missense_variant	REV__PCYT1B|p.F157S|1|0.96|ENSG00000102230|chrX:24590039-24590039|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	538.6683349609375	2	538.268947	1074.52334	-0.64714	-0.00034833	-0.59957	-0.00032273	-1.2467	-0.00067107	538.2685456358668	63.619	0.51164	63.619	63.326	63.837	0					13	9	2	0	0	0	0.67483	1	23055	23055		10.074	2.7847	1	1371100	+		11640	27750	8287	8357	11379	11379					-0.010939733761233583
ELSEYWVCV	9	Unmodified	_ELSEYWVCV_					0	0	0		chr11:111911922-111913933|159|12.86|0.44|4.87|-|0|CRYAB,None|1	chr11:111911922-111913933|159|12.86|0.44|4.87|-|0|CRYAB,None|1	chr11:111911922-111913933|159|12.86|0.44|4.87|-|0|CRYAB,None|1	MSMS	A375_MHC_IP_R2	2	564.1806640625	2	564.257525	1126.5005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.015	1	48.776	48.276	49.276	0.76128								0	0	0	0.1521	1	18022	18022		18.135	3.2967	1				11641	400	8288	8358	11380	11380					-0.05769315765269312
ELSFDKINKEK	11	Unmodified	_ELSFDKINKEK_					0	0	0			REV__tr|U7SJ15|U7SJ15_FUSNUDNAhelicaseRecQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02060PE=3SV=1	REV__tr|U7SJ15|U7SJ15_FUSNUDNAhelicaseRecQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02060PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	676.266845703125	2	675.866817	1349.71908	-0.48008	-0.00032447	0.60447	0.00040854	0.12439	8.4072E-05	675.866844239853	94.28	0.45676	95.025	94.768	95.224	0.74474					16	8	3	0	0	0	0.90673	1	35841	35841		9.544	0	1	2761100	+		11642	28223	8289	8359	11381	11381					0.05820992077883602
ELSFSPKPF	9	Unmodified	_ELSFSPKPF_					0	0	0		nc|ENSG00000080224|Q9UF33|EPHA6;ENSG00000080224|ENST00000389672|EPHA6	nc|ENSG00000080224|Q9UF33|EPHA6	nc|ENSG00000080224|Q9UF33|EPHA6	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1478271484375	2	526.276575	1050.5386	-0.39638	-0.00020861	-0.89542	-0.00047124	-1.2918	-0.00067984	526.7774698314743	70.238	0.2545	70.972	70.895	71.149	0.73421					6	4	2	0	0	0	0.60917	1	26651	26651		13.906	2.2658	1	913120			11643	1710	8290	8360	11382	11382					0.015349382117165078
ELSGGHDSTF	10	Unmodified	_ELSGGHDSTF_					0	0	0			REV__ENSG00000157399|ENST00000381134|ARSL	REV__ENSG00000157399|ENST00000381134|ARSL	MSMS	A375_MHC_IP_R1	1	525.18896484375	2	525.230353	1048.44615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.061	1	56.061	55.561	56.561	0								0	0	0	0.15308	1	20072	20072		10.824	1.4408	1		+		11644	20027	8291	8361	11383	11383					-0.07613191592463409
ELSGMTIEM	9	Unmodified	_ELSGMTIEM_					0	0	0			REV__ENSG00000178685|ENST00000313028|PARP10	REV__ENSG00000178685|ENST00000313028|PARP10	MULTI-SECPEP	A375_MHC_IP_R2	2	506.142822265625	2	505.730286	1009.44602	-1.0408	-0.00052636	0.87746	0.00044376	-0.16334	-8.2605E-05	505.7305340661579	54.154	0.51129	54.905	54.557	55.068	0.75097					14	9	2	0	0	0	0.73363	1	20322	20322		6.7232	0	1	1523200	+		11645	21513	8292	8362	11384	11384					-0.05832650908314463
ELSGPAHMTY	10	Unmodified	_ELSGPAHMTY_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;ENST00000573536.1_1_17:3920391-3920838:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	A375_MHC_IP_R2	2	553.2109985351562	2	553.252774	1104.491	-0.91243	-0.0005048	-2.1058	-0.001165	-3.0182	-0.0016698	553.2516073515649	55.053	0.46027	55.804	55.523	55.984	0.75075					15	8	2	0	0	0	0.60556	1	20772	20772		20.454	1.1966	1	3058100			11646	1592	8293	8363	11385	11385					-0.05707084050754929
ELSHFPSLY	9	Unmodified	_ELSHFPSLY_					0	0	0		C7|p.L283F|1|0.38|ENSG00000112936|chr5:40947710-40947710|C/T|missense_variant	C7|p.L283F|1|0.38|ENSG00000112936|chr5:40947710-40947710|C/T|missense_variant	C7|p.L283F|1|0.38|ENSG00000112936|chr5:40947710-40947710|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	547.171142578125	2	546.771657	1091.52876	-0.30491	-0.00016672	-0.40185	-0.00021972	-0.70676	-0.00038644	546.7714051586945	39.173	0.71025	39.173	38.78	39.491	0					22	13	3	0	0	0	0.65246	1	13376	13376		10.824	0	1	5213200			11647	271	8294	8364	11386	11386					-0.013342497936491782
ELSHLLTLV	9	Unmodified	_ELSHLLTLV_					0	0	0		ZMYM1|p.S854F|1|0.12|ENSG00000197056|chr1:35114391-35114391|C/T|missense_variant;ZMYM1|p.Y1030Lfs*8|1|0.17|ENSG00000197056|chr1:35114914-35114915|-/T|frameshift_variant;ENSG00000197056|ENST00000359858|ZMYM1	ZMYM1|p.S854F|1|0.12|ENSG00000197056|chr1:35114391-35114391|C/T|missense_variant	ZMYM1|p.S854F|1|0.12|ENSG00000197056|chr1:35114391-35114391|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	513.880859375	2	512.8055	1023.59645	-0.45544	-0.00023355	0.035586	1.8249E-05	-0.41985	-0.0002153	512.8054031684558	98.435	1.1672	98.435	98.101	99.268	0					41	22	3	0	0	0	0.32899	1	36198	36198		28.487	5.3384	1	1985600			11648	9110	8295	8365	11387	11387					0.08559200137153766
ELSINIAKA	9	Unmodified	_ELSINIAKA_					0	0	0			REV__tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	REV__tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	958.49169921875	1	958.556773	957.549496	0.26457	0.0002536	-0.10475	-0.00010041	0.15982	0.00015319	958.5564914079242	68.984	0.35276	68.984	68.769	69.121	0					9	6	2	0	0	0	0.68046	1	25069	25069		8.7454	0	1	1241200	+		11649	28685	8296	8366	11388	11388					0.0690234058599799
ELSKLKETV	9	Unmodified	_ELSKLKETV_					0	0	0		ENST00000479415.1_1_3:167759128-167762642:-|nuORF;ENSG00000173905|ENST00000470487|GOLIM4	ENST00000479415.1_1_3:167759128-167762642:-|nuORF	ENST00000479415.1_1_3:167759128-167762642:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	523.2060546875	2	523.808239	1045.60193	-0.38884	-0.00020368	-1.0551	-0.00055269	-1.444	-0.00075637	523.8077581092737	85.387	0.61244	86.123	85.677	86.29	0.73601					15	11	2	0	0	0	0.69504	1	32448	32448		12.532	0	1	2029300			11650	7839	8297	8367	11389	11389					0.08094878928932303
ELSKLRQFS	9	Unmodified	_ELSKLRQFS_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	A375_MHC_IP_R1	1	554.2318725585938	2	554.31148	1106.60841	-0.65803	-0.00036475	-0.57297	-0.0003176	-1.231	-0.00068236	554.3112748209991	53.213	0.81087	53.213	52.744	53.555	0					44	15	4	0	0	0	0.60101	1	18866	18866		14.838	2.5976	1	9962100			11651	1157	8298	8368	11390	11390					0.05936816880330298
ELSKMTVTF	9	Unmodified	_ELSKMTVTF_					0	0	0			REV__DNAH5|p.G3722S|1|0.22|ENSG00000039139|chr5:13751125-13751125|C/T|missense_variant	REV__DNAH5|p.G3722S|1|0.22|ENSG00000039139|chr5:13751125-13751125|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	528.6200561523438	2	528.275718	1054.53688	-0.50115	-0.00026475	1.3567	0.00071672	0.85556	0.00045197	528.7774762638965	79.618	0.41154	79.618	79.367	79.778	0					12	7	2	0	0	0	0.6656	1	29089	29089		10.074	0	1	2409400	+		11652	16013	8299	8369	11391	11391					0.011795611314482812
ELSKSSCKH	9	Unmodified	_ELSKSSCKH_					0	0	0			REV__METTL2B|p.E139K|1|0.07|ENSG00000165055|chr7:128479370-128479370|G/A|missense_variant	REV__METTL2B|p.E139K|1|0.07|ENSG00000165055|chr7:128479370-128479370|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	510.1997985839844	2	509.752941	1017.49133	-0.90745	-0.00046257	2.4458	0.0012468	1.5384	0.00078419	510.2553928221135	40.616	0.40733	41.391	41.285	41.692	0.77451					11	7	2	0	0	0	0.60917	1	15056	15056		19.257	2.3147	1	1411900	+		11653	16876	8300	8370	11392	11392					-0.0167166433092234
ELSLEELEKL	10	Unmodified	_ELSLEELEKL_					0	0	0			REV__ENSG00000158417|ENST00000289371|EIF5B	REV__ENSG00000158417|ENST00000289371|EIF5B	MSMS	A375_MHC_IP_R2	2	401.60479736328125	3	401.555338	1201.64418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.103	1	75.841	75.341	76.341	0.73752								0	0	0	0.15353	1	28506	28506		5.4027	0.35519	1		+		11654	20073	8301	8371	11393	11393					0.05142809546669014
ELSLENEYT	9	Unmodified	_ELSLENEYT_					0	0	0		GFRAL|p.G10E|2|0.25|ENSG00000187871|chr6:55331721-55331721|G/A|missense_variant	GFRAL|p.G10E|2|0.25|ENSG00000187871|chr6:55331721-55331721|G/A|missense_variant	GFRAL|p.G10E|2|0.25|ENSG00000187871|chr6:55331721-55331721|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	549.1664428710938	2	549.253494	1096.49243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.977	1	23.977	23.477	24.477	0								0	0	0	0.1499	1	6693	6693		21.747	2.4897	1				11655	14044	8302	8372	11394	11394					-0.051951714810456906
ELSLLTKGV	9	Unmodified	_ELSLLTKGV_					0	0	0			REV__ENSG00000154783|ENST00000285046|FGD5	REV__ENSG00000154783|ENST00000285046|FGD5	MULTI-MSMS	A375_MHC_IP_R1	1	961.006591796875	1	959.577174	958.569897	0.12951	0.00012428	0.36767	0.00035281	0.49718	0.00047709	959.5774318874555	63.3	0.45958	63.3	63.069	63.529	0					18	8	3	0	0	0	0.34064	1	22930	22930		27.629	4.8925	1	4549300	+		11656	19898	8303	8373	11395	11395					0.08895511245827947
ELSLLTKGV	9	Unmodified	_ELSLLTKGV_					0	0	0			REV__ENSG00000154783|ENST00000285046|FGD5	REV__ENSG00000154783|ENST00000285046|FGD5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	959.577174	958.569897	0.12951	0.00012428	0.36767	0.00035281	0.49718	0.00047709	959.5774318874555	63.3	0.45958	63.3	63.069	63.529	0	0.048818	-6.2995E-05	NaN	27.629	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4549300	+		11657	19898	8303	8373							0.08895511245827947
ELSLLTKGV	9	Unmodified	_ELSLLTKGV_					0	0	0			REV__ENSG00000154783|ENST00000285046|FGD5	REV__ENSG00000154783|ENST00000285046|FGD5	MULTI-MATCH	A375_MHC_IP_R2	2		1	959.577174	958.569897	-0.20238	-0.0001942	0.4882	0.00046846	0.28581	0.00027426	959.577614326205	62.459	0.40619	63.202	63.028	63.434	0.74263	-0.048818	5.2657E-05	NaN	27.629	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5027800	+		11658	19898	8303	8373							0.08895511245827947
ELSLSFSVNV	10	Unmodified	_ELSLSFSVNV_					0	0	0			REV__ENSG00000008226|ENST00000308059|DLEC1	REV__ENSG00000008226|ENST00000308059|DLEC1	MULTI-MSMS	A375_MHC_IP_R1	1	547.7158813476562	2	547.790047	1093.56554	-0.54862	-0.00030053	-0.59794	-0.00032755	-1.1466	-0.00062808	547.7894694712203	55.105	0.86312	55.105	54.619	55.482	0					30	16	3	0	0	0	0.27246	1	19524	19524		41.84	8.3947	1	2734000	+		11659	16168	8304	8374	11396	11396					0.022500020322468117
ELSLVELRPVW	11	Unmodified	_ELSLVELRPVW_					0	0	0			REV__ENST00000490860.1_1_21:40764845-40768862:+|nuORF	REV__ENST00000490860.1_1_21:40764845-40768862:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	670.7764892578125	2	670.88227	1339.74999	-0.74118	-0.00049724	-0.62966	-0.00042243	-1.3708	-0.00091967	670.8816188243304	103.04	0.71078	103.81	103.33	104.04	0.76428					36	13	4	0	0	0	0.72649	1	38925	38925		12.241	6.5088	1	11071000	+		11660	25391	8305	8375	11397	11397					0.09370190182767146
ELSMAESSDM	10	Unmodified	_ELSMAESSDM_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MSMS	A375_MHC_IP_R2	2	550.134033203125	2	550.21774	1098.42093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.486	1	58.235	57.735	58.735	0.74894								0	0	0	0.15365	1	21738	21738		14.838	2.3067	1		+		11661	16747	8306	8376	11398	11398					-0.12434750501552116
ELSNKRRRRRR	11	Unmodified	_ELSNKRRRRRR_					0	0	0			REV__ENST00000607809.5_1_12:54472874-54474119:-|nuORF	REV__ENST00000607809.5_1_12:54472874-54474119:-|nuORF	MSMS	A375_MHC_IP_R2	2	509.6458435058594	3	509.645212	1525.91381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.242	1	91.976	91.476	92.476	0.7345								0	0	0	0.16316	1	34716	34716		2.2527	1.7468	1		+		11662	26553	8307	8377	11399	11399					0.1718864551689876
ELSNPEISKY	10	Unmodified	_ELSNPEISKY_					0	0	0		ENSG00000172869|ENST00000539542|DMXL1;nc|ENSG00000172869|Q9Y485|DMXL1;ENST00000512281.1_1_5:118470015-118483170:+|nuORF	ENSG00000172869|ENST00000539542|DMXL1	ENSG00000172869|ENST00000539542|DMXL1	MULTI-SECPEP	A375_MHC_IP_R2	2	589.7085571289062	2	590.298236	1178.58192	-0.86369	-0.00050984	0.69219	0.0004086	-0.1715	-0.00010124	590.2988639607796	38.768	0.3577	39.543	39.351	39.708	0.77451					10	6	2	0	0	0	0.87043	1	14310	14310		10.8	0	1	1469300			11663	7739	8308	8378	11400	11400					-0.00022916801663086517
ELSNTNEVVI	10	Unmodified	_ELSNTNEVVI_					0	0	0		nc|ENSG00000196116|Q8NHU6-2|TDRD7;ENSG00000196116|ENST00000355295|TDRD7	nc|ENSG00000196116|Q8NHU6-2|TDRD7	nc|ENSG00000196116|Q8NHU6-2|TDRD7	MULTI-SECPEP	A375_MHC_IP_R1	1	559.7214965820312	2	559.290411	1116.56627	-0.55468	-0.00031023	-2.0634	-0.0011541	-2.6181	-0.0014643	559.2882388147427	89.731	0.45512	89.731	89.526	89.981	0					15	8	3	0	0	0	0.6774	1	33039	33039		27.629	2.6378	1	1288900			11664	8997	8309	8379	11401	11401					0.012647966813119638
ELSPFIVF	8	Unmodified	_ELSPFIVF_					0	0	0		nc|ENSG00000130830|Q00013-3|MPP1;ENSG00000130830|ENST00000369534|MPP1;ENST00000491955.5_1_X:154007454-154010087:-|nuORF;nc|ENSG00000130830|Q00013-2|MPP1	nc|ENSG00000130830|Q00013-3|MPP1	nc|ENSG00000130830|Q00013-3|MPP1	MULTI-SECPEP	A375_MHC_IP_R2	2	476.66131591796875	2	476.262936	950.51132	-0.34638	-0.00016497	-3.7052	-0.0017646	-4.0516	-0.0019296	476.26131819172645	111.39	0.51529	112.13	111.85	112.37	0.73692					12	9	2	0	0	0	0.90224	1	42030	42030		13.508	0	1	1212000			11665	4289	8310	8380	11402	11402					0.03408454671330219
ELSPFIVF	8	Unmodified	_ELSPFIVF_					0	0	0		nc|ENSG00000130830|Q00013-3|MPP1;ENSG00000130830|ENST00000369534|MPP1;ENST00000491955.5_1_X:154007454-154010087:-|nuORF;nc|ENSG00000130830|Q00013-2|MPP1	nc|ENSG00000130830|Q00013-3|MPP1	nc|ENSG00000130830|Q00013-3|MPP1	MULTI-MATCH	A375_MHC_IP_R1	1		2	476.262936	950.51132	-0.23939	-0.00011401	-4.7655	-0.0022696	-5.0049	-0.0023836	476.26078424656316	112.15	0.4572	112.15	111.98	112.43	0	0.010801	-0.00023541	NaN	13.508	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	836670			11666	4289	8310	8380							0.03408454671330219
ELSPYNRKD	9	Unmodified	_ELSPYNRKD_					0	0	0			REV__ENSG00000089199|ENST00000378961|CHGB	REV__ENSG00000089199|ENST00000378961|CHGB	MULTI-SECPEP	A375_MHC_IP_R2	2	1121.064697265625	1	1121.55856	1120.55129	0.12581	0.0001411	-2.379	-0.0026682	-2.2532	-0.0025271	1122.5613020983794	123.27	0.2525	123.65	123.48	123.73	0.3766					6	4	2	0	0	0	0.76827	1	47293	47293		3.5965	0	1	26538000	+		11667	16908	8311	8381	11403	11403					-0.004166503960504997
ELSQKQRKI	9	Unmodified	_ELSQKQRKI_					0	0	0			REV__nc|ENSG00000107937|Q9BZE4-3|GTPBP4	REV__nc|ENSG00000107937|Q9BZE4-3|GTPBP4	MULTI-MSMS	A375_MHC_IP_R2	2	377.6277160644531	3	377.227779	1128.66151	-0.14891	-5.6174E-05	-0.51162	-0.000193	-0.66054	-0.00024917	377.2277447482487	21.194	0.91277	21.813	21.219	22.132	0.61932					29	17	3	0	0	0	0.3489	1	6673	6673		27.223	2.3417	1	2037500	+		11668	17506	8312	8382	11404	11404					0.10232194662989968
ELSQNYNEF	9	Unmodified	_ELSQNYNEF_					0	0	0			REV__ENSG00000198677|ENST00000358746|SKIC3	REV__ENSG00000198677|ENST00000358746|SKIC3	MSMS	A375_MHC_IP_R1	1	572.1509399414062	2	572.251286	1142.48802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.545	1	66.545	66.045	67.045	0								0	0	0	0.15486	1	24100	24100		10.824	0	1		+		11669	22395	8313	8383	11405	11405					-0.07752635903943883
ELSQYLRSY	9	Unmodified	_ELSQYLRSY_					0	0	0			REV__ENST00000591563.5_1_17:73828844-73835996:-|nuORF	REV__ENST00000591563.5_1_17:73828844-73835996:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	387.2835693359375	3	386.864506	1157.57169	-0.77195	-0.00029864	0.92755	0.00035883	0.15559	6.0194E-05	386.8648392329524	37.121	0.45553	37.892	37.615	38.07	0.7709					13	8	2	0	0	0	0.77396	1	13611	13611		0.69767	0	1	1776900	+		11670	16978	8314	8384	11406	11406					-0.0007947973624595761
ELSRHLTRFH	10	Unmodified	_ELSRHLTRFH_					0	0	0		ENSG00000112137|ENST00000332995|PHACTR1	ENSG00000112137|ENST00000332995|PHACTR1	ENSG00000112137|ENST00000332995|PHACTR1	MSMS	A375_MHC_IP_R1	1	648.4990234375	2	648.352003	1294.68945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.783	1	82.783	82.283	83.283	0								0	0	0	0.15435	1	30279	30279		6.7232	0.51738	1				11671	3051	8315	8385	11407	11407					0.053895176430842184
ELSRKLEKY	9	Unmodified	_ELSRKLEKY_					0	0	0			REV__nc|ENSG00000106052|Q86VP1-3|TAX1BP1	REV__nc|ENSG00000106052|Q86VP1-3|TAX1BP1	MULTI-SECPEP	A375_MHC_IP_R2	2	583.2162475585938	2	583.332413	1164.65027	-0.69338	-0.00040447	-0.11101	-6.4756E-05	-0.8044	-0.00046923	583.332212646362	49.727	0.45947	50.481	50.294	50.753	0.75406					17	8	3	0	0	0	0.65246	1	18692	18692		21.747	9.506	1	2279800	+		11672	17428	8316	8386	11408	11408					0.07453372568875238
ELSRQLYSP	9	Unmodified	_ELSRQLYSP_					0	0	0			REV__ENST00000501104.2_1_8:70746371-70748914:+|nuORF	REV__ENST00000501104.2_1_8:70746371-70748914:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	546.6954345703125	2	546.787838	1091.56112	-0.71262	-0.00038965	0.46085	0.00025198	-0.25177	-0.00013767	546.788266570602	64.274	0.9155	65.015	64.394	65.31	0.74022					45	17	4	0	0	0	0.46465	1	24465	24465		21.537	0	1	5826600	+		11673	25490	8317	8387	11409	11409					0.019005376093446102
ELSSMGAIVW	10	Unmodified	_ELSSMGAIVW_					0	0	0		nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MSMS	A375_MHC_IP_R1	1	547.6851806640625	2	546.773342	1091.53213	-0.53525	-0.00029266	-0.054922	-3.003E-05	-0.59017	-0.00032269	546.7732868884837	50.342	0.81934	50.342	49.793	50.613	0					48	15	4	0	0	0	0.6806	1	17658	17658		14.838	1.3304	1	11366000			11674	9169	8318	8388	11410	11410					-0.009973230113018872
ELSTERLNY	9	Unmodified	_ELSTERLNY_					0	0	0			REV__tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1	REV__tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	563.1474609375	2	562.782753	1123.55095	-0.037738	-2.1238E-05	0.91381	0.00051428	0.87607	0.00049304	563.2842397530751	69.858	0.55617	69.858	69.529	70.085	0					13	10	2	0	0	0	0.58271	1	25428	25428		14.838	0	1	1716600	+		11675	28173	8319	8389	11411	11411					-0.005880701158957891
ELSVKLVTV	9	Unmodified	_ELSVKLVTV_					0	0	0			REV__nc|ENSG00000068078|P22607-3|FGFR3	REV__nc|ENSG00000068078|P22607-3|FGFR3	MULTI-SECPEP	A375_MHC_IP_R1	1	493.69970703125	2	494.307875	986.601197	-0.59714	-0.00029517	0.32858	0.00016242	-0.26856	-0.00013275	494.30794292659675	66.709	0.97097	66.709	66.428	67.399	0					47	18	4	0	0	0	0.11711	1	24250	24250		60.074	23.947	1	18178000	+		11676	27112	8320	8390	11412	11412					0.10736084279926672
ELSWEDYL	8	Unmodified	_ELSWEDYL_					0	0	0		nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	MULTI-MSMS	A375_MHC_IP_R1	1	527.638916015625	2	527.740022	1053.46549	-0.52134	-0.00027513	-0.89041	-0.00046991	-1.4118	-0.00074504	527.7400662177871	99.736	0.80563	99.736	99.473	100.28	0					30	15	3	0	0	0	0.77488	1	36803	36803		13.508	1.8676	1	1811700			11677	6748	8321	8391	11413	11413					-0.05910235301553257
ELSWHVVF	8	Unmodified	_ELSWHVVF_					0	0	0		ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	MULTI-MSMS	A375_MHC_IP_R2	2	510.23565673828125	2	508.763635	1015.51272	-0.67872	-0.00034531	0.32916	0.00016746	-0.34956	-0.00017784	508.76355463216856	88.383	0.91255	89.115	88.671	89.584	0.7318					39	17	4	0	0	0	0.77123	1	33678	33678		14.582	0	1	3936600			11678	3345	8322	8392	11414	11414					0.0055808876010132735
ELSWKNILS	9	Unmodified	_ELSWKNILS_					0	0	0			REV__ENSG00000213024|ENST00000352066|NUP62	REV__ENSG00000213024|ENST00000352066|NUP62	MULTI-SECPEP	A375_MHC_IP_R2	2	544.6798095703125	2	545.300581	1088.58661	-1.1149	-0.00060795	-0.040845	-2.2273E-05	-1.1557	-0.00063022	545.3006142384756	58.36	0.35812	59.109	58.98	59.338	0.74894					11	6	2	0	0	0	0.60917	1	22043	22043		13.906	1.3745	1	1980500	+		11679	22610	8323	8393	11415	11415					0.045860121317673475
ELSWQQYY	8	Unmodified	_ELSWQQYY_					0	0	0			REV__ENST00000579065.1_1_17:8052750-8054072:-|nuORF	REV__ENST00000579065.1_1_17:8052750-8054072:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	559.16943359375	2	558.753464	1115.49238	-0.15591	-8.7117E-05	4.1435	0.0023152	3.9876	0.0022281	559.2566983353724	69.161	0.30681	69.161	69.02	69.326	0					6	5	2	0	0	0	0.972	1	25122	25122		10.183	6.5869	1	638700	+		11680	21541	8324	8394	11416	11416					-0.0607512669037078
ELSYRLPS	8	Unmodified	_ELSYRLPS_					0	0	0			REV__ENSG00000197410|ENST00000357232|DCHS2	REV__ENSG00000197410|ENST00000357232|DCHS2	MULTI-MSMS	A375_MHC_IP_R2	2	484.6632385253906	2	482.758549	963.502546	-0.66142	-0.00031931	-0.092049	-4.4437E-05	-0.75347	-0.00036374	482.75845966283674	40.373	1.2697	41.147	40.676	41.946	0.77451					82	24	5	0	0	0	0.77123	1	14840	14840		14.582	0	1	99304000	+		11681	22286	8325	8395	11417	11417					0.019334810348709652
ELSYRWRRRKR	11	Unmodified	_ELSYRWRRRKR_					0	0	0			REV__ENST00000433071.2_1_21:32931573-32932426:+|nuORF	REV__ENST00000433071.2_1_21:32931573-32932426:+|nuORF	MSMS	A375_MHC_IP_R2	2	803.4479370117188	2	803.463481	1604.91241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.89	1	113.61	113.11	114.11	0.72458								0	0	0	0.16334	1	42558	42558		1.3295	1.0225	1		+		11682	24724	8326	8396	11418	11418					0.1341501142812831
ELTAPVVPVH	10	Unmodified	_ELTAPVVPVH_					0	0	0			REV__AluJb_dup58533|chr9:5898059-5898334:-|2.6856399419642107|0.0040866885826934|9.36|427.0|2|1|sense	REV__AluJb_dup58533|chr9:5898059-5898334:-|2.6856399419642107|0.0040866885826934|9.36|427.0|2|1|sense	MULTI-MSMS	A375_MHC_IP_R1	1	532.7236328125	2	531.303124	1060.5917	-0.55779	-0.00029636	0.1758	9.3402E-05	-0.38199	-0.00020295	531.3030900591407	102.75	1.0676	102.75	102.45	103.52	0					52	20	4	0	0	0	0.53946	1	37813	37813		25.399	0.40835	1	11228000	+		11683	15362	8327	8397	11419	11419					0.06382315994369492
ELTARPWVY	9	Unmodified	_ELTARPWVY_					0	0	0			REV__WDR6|p.S14L|1|0.46|ENSG00000178252|chr3:49007472-49007472|C/T|missense_variant	REV__WDR6|p.S14L|1|0.46|ENSG00000178252|chr3:49007472-49007472|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	567.8465576171875	2	567.800749	1133.58694	-0.40401	-0.0002294	0.62451	0.0003546	0.2205	0.0001252	567.8004434110442	75.179	1.4717	75.917	75.519	76.991	0.73751					55	28	4	0	0	0	0.60101	1	28773	28773		14.838	0.43289	1	9545700	+		11684	28995	8328	8398	11420	11420					0.02549431851616646
ELTAVMRFL	9	Unmodified	_ELTAVMRFL_					0	0	0		ENSG00000131471|ENST00000308423|AOC3;AOC2|p.S574Ffs*14|1|0.37|ENSG00000131480|chr17:42849212-42849213|-/T|frameshift_variant;nc|ENSG00000131471|Q16853-2|AOC3;AOC2|p.V691Dfs*14|1|0.21|ENSG00000131480|chr17:42850147-42850148|AG/-|frameshift_variant;nc|ENSG00000131480|O75106-2|AOC2;ENSG00000131480|ENST00000253799|AOC2	ENSG00000131471|ENST00000308423|AOC3	ENSG00000131471|ENST00000308423|AOC3	MSMS	A375_MHC_IP_R2	2	540.5482177734375	2	540.299527	1078.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.446	1	76.187	75.687	76.687	0.74052								0	0	0	0.15283	1	28641	28641		16.942	2.3606	1				11685	4334	8329	8399	11421	11421					0.04835260122308682
ELTCPICYSI	10	Unmodified	_ELTCPICYSI_					0	0	0		nc|ENSG00000068885|Q9P2H3-3|IFT80;ENSG00000213186|ENST00000309784|TRIM59	nc|ENSG00000068885|Q9P2H3-3|IFT80	nc|ENSG00000068885|Q9P2H3-3|IFT80	MULTI-SECPEP	A375_MHC_IP_R2	2	570.666259765625	2	571.267035	1140.51952	-0.31319	-0.00017892	0.31628	0.00018068	0.0030876	1.7639E-06	571.2671428774715	107.83	1.2765	108.58	107.9	109.17	0.75436					44	24	3	0	0	0	0.85226	1	40895	40895		14.838	0	1	7952600			11686	14476	8330	8400	11422	11422					-0.04512102465855605
ELTDVERYMY	10	Unmodified	_ELTDVERYMY_					0	0	0			REV__ENSG00000111249|ENST00000261726|CUX2	REV__ENSG00000111249|ENST00000261726|CUX2	MULTI-SECPEP	A375_MHC_IP_R1	1	660.5006713867188	2	659.802828	1317.5911	-0.51143	-0.00033744	-3.9192	-0.0025859	-4.4307	-0.0029234	659.8012933211562	87.752	0.30499	87.752	87.593	87.898	0					8	5	2	0	0	0	0.92957	1	32261	32261		1.3295	0	1	1376800	+		11687	17658	8331	8401	11423	11423					-0.054988915076137346
ELTHYTAY	8	Unmodified	_ELTHYTAY_					0	0	0			REV__ENSG00000091704|ENST00000011292|CPA1	REV__ENSG00000091704|ENST00000011292|CPA1	MULTI-MSMS	A375_MHC_IP_R1	1	499.6343688964844	2	499.234907	996.455261	-0.38318	-0.0001913	0.015816	7.8958E-06	-0.36736	-0.0001834	499.2348852888605	61.661	1.1761	61.661	61.227	62.403	0					61	22	4	0	0	0	0.77603	1	22390	22390		9.3474	1.1919	1	57292000	+		11688	16956	8332	8402	11424	11424					-0.043107982361448194
ELTKMLCEI	9	Unmodified	_ELTKMLCEI_					0	0	0		ENSG00000155849|ENST00000310758|ELMO1;nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2;nc|ENSG00000155849|Q92556-3|ELMO1	ENSG00000155849|ENST00000310758|ELMO1;nc|ENSG00000062598|Q96JJ3-3|ELMO2;nc|ENSG00000155849|Q92556-3|ELMO1	nc|ENSG00000062598|Q96JJ3-3|ELMO2	MULTI-MSMS	A375_MHC_IP_R1	1	540.678955078125	2	540.277403	1078.54025	-0.74103	-0.00040036	3.1747	0.0017152	2.4336	0.0013148	540.2784559363308	80.314	0.91586	80.314	79.676	80.592	0					28	17	3	0	0	0	0.44024	1	29334	29334		22.736	5.794	1	1697400			11689	1332;6159;14696	8333	8403	11425	11425					0.0041248791380894545
ELTKMLCEI	9	Unmodified	_ELTKMLCEI_					0	0	0		ENSG00000155849|ENST00000310758|ELMO1;nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2;nc|ENSG00000155849|Q92556-3|ELMO1	ENSG00000155849|ENST00000310758|ELMO1;nc|ENSG00000062598|Q96JJ3-3|ELMO2;nc|ENSG00000155849|Q92556-3|ELMO1	nc|ENSG00000062598|Q96JJ3-3|ELMO2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	540.277403	1078.54025	-0.74144	-0.00040059	3.4837	0.0018822	2.7422	0.0014816	540.2791479445729	79.423	0.45665	80.168	79.997	80.453	0.74474	-0.073202	0.00013959	NaN	22.736	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2132900			11690	1332;6159;14696	8333	8403							0.0041248791380894545
ELTKTIKSL	9	Unmodified	_ELTKTIKSL_					0	0	0		nc|ENSG00000108094|Q13617-2|CUL2;ENSG00000108094|ENST00000374749|CUL2	nc|ENSG00000108094|Q13617-2|CUL2	nc|ENSG00000108094|Q13617-2|CUL2	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1821899414062	2	516.818607	1031.62266	-0.50333	-0.00026013	-0.36274	-0.00018747	-0.86607	-0.0004476	516.8184582378826	59.726	0.40644	59.726	59.498	59.905	0					10	7	2	0	0	0	0.62767	1	21546	21546		7.2892	0	1	941700			11691	2784	8334	8404	11426	11426					0.108114693086236
ELTLPHEPD	9	Unmodified	_ELTLPHEPD_					0	0	0			REV__ENST00000569299.1_1_16:66967504-66968009:-|nuORF	REV__ENST00000569299.1_1_16:66967504-66968009:-|nuORF	MSMS	A375_MHC_IP_R1	1	525.697265625	2	525.758746	1049.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.481	1	81.481	80.981	81.981	0								0	0	0	0.14359	1	29776	29776		28.487	5.3384	1		+		11692	20690	8335	8405	11427	11427					-0.01983144035943951
ELTLQKVECS	10	Unmodified	_ELTLQKVECS_					0	0	0			REV__ENSG00000173715|ENST00000540737|C11orf80	REV__ENSG00000173715|ENST00000540737|C11orf80	MULTI-MSMS	A375_MHC_IP_R1	1	575.2188110351562	2	575.294639	1148.57472	-0.07916	-4.5541E-05	-3.0313	-0.0017439	-3.1105	-0.0017894	575.2919063337101	54.437	0.40687	54.437	54.263	54.67	0					10	7	2	0	0	0	0.64579	1	19444	19444		17.443	2.6044	1	950390	+		11693	21245	8336	8406	11428	11428					0.006380273262720948
ELTLSFRRR	9	Unmodified	_ELTLSFRRR_					0	0	0			REV__chr21:41168575-41226272|220|28.25|0.52|5.76|+|1|BACE2,None|2	REV__chr21:41168575-41226272|220|28.25|0.52|5.76|+|1|BACE2,None|2	MULTI-SECPEP	A375_MHC_IP_R2	2	588.703369140625	2	589.343646	1176.67274	-0.41401	-0.00024399	0.085669	5.0488E-05	-0.32834	-0.00019351	589.3435977767363	135.96	1.2314	136.07	135.74	136.97	0.11134					31	23	2	0	0	0	0.78798	1	53414	53414		7.2892	0	1	4156600	+		11694	15745	8337	8407	11429	11429					0.09147016757151505
ELTMHGSEV	9	Unmodified	_ELTMHGSEV_					0	0	0			REV__ENSG00000157060|ENST00000367547|SHCBP1L	REV__ENSG00000157060|ENST00000367547|SHCBP1L	MSMS	A375_MHC_IP_R2	2	501.6422424316406	2	501.731674	1001.4488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.683	1	72.417	71.917	72.917	0.73421								0	0	0	0.14905	1	27196	27196		23.148	1.4018	1		+		11695	20008	8338	8408	11430	11430					-0.05187059459160537
ELTNKLPDLW	10	Unmodified	_ELTNKLPDLW_					0	0	0		LAMA3|p.K2341E|1|0.36|ENSG00000053747|chr18:23909158-23909158|A/G|missense_variant	LAMA3|p.K2341E|1|0.36|ENSG00000053747|chr18:23909158-23909158|A/G|missense_variant	LAMA3|p.K2341E|1|0.36|ENSG00000053747|chr18:23909158-23909158|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	615.2330932617188	2	614.832246	1227.64994	-0.34249	-0.00021057	0.54693	0.00033627	0.20444	0.0001257	614.8330127054663	74.101	0.55783	74.101	73.893	74.451	0					13	10	2	0	0	0	0.70565	1	27004	27004		10.8	1.4164	1	1873800			11696	14280	8339	8409	11431	11431					0.0452195284899517
ELTNRFSF	8	Unmodified	_ELTNRFSF_					0	0	0			REV__chr11:89191418-89284773|372|90.26|0.03|11.71|+|2|TYR,TYR|1	REV__chr11:89191418-89284773|372|90.26|0.03|11.71|+|2|TYR,TYR|1	MULTI-MSMS	A375_MHC_IP_R1	1	507.7263488769531	2	507.256174	1012.49779	-0.33263	-0.00016873	-0.39293	-0.00019932	-0.72556	-0.00036805	507.2556544849942	46.169	0.35468	46.169	45.941	46.295	0					10	6	2	0	0	0	0.77603	1	16175	16175		9.3474	0	1	1155900	+		11697	15680	8340	8410	11432	11432					-0.007954031079066226
ELTQDDYCK	9	Unmodified	_ELTQDDYCK_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MSMS	A375_MHC_IP_R2	2	557.7188110351562	2	557.739696	1113.46484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.027	1	88.759	88.259	89.259	0.7318								0	0	0	0.15486	1	33493	33493		6.7232	0.51738	1		+		11698	18931	8341	8411	11433	11433					-0.08735398012936457
ELTQETSDMT	10	Unmodified	_ELTQETSDMT_					0	0	0		ENSG00000198765|ENST00000369522|SYCP1	ENSG00000198765|ENST00000369522|SYCP1	ENSG00000198765|ENST00000369522|SYCP1	MULTI-SECPEP	A375_MHC_IP_R2	2	578.14892578125	2	577.747718	1153.48088	-0.58253	-0.00033655	0.17679	0.00010214	-0.40574	-0.00023441	577.7477617744173	57.205	1.0701	57.955	57.458	58.528	0.74987					49	20	3	0	0	0	0.6774	1	21515	21515		21.537	21.537	1	12632000			11699	9321	8342	8412	11434	11434					-0.08971736566695654
ELTQTFNSL	9	Unmodified	_ELTQTFNSL_					0	0	0			REV__ENSG00000159197|ENST00000290310|KCNE2	REV__ENSG00000159197|ENST00000290310|KCNE2	MULTI-SECPEP	A375_MHC_IP_R2	2	527.1658935546875	2	526.766571	1051.51859	-0.38401	-0.00020228	-0.17334	-9.1311E-05	-0.55735	-0.00029359	526.7661958893804	64.442	1.0175	65.182	64.597	65.615	0.74022					27	19	2	0	0	0	0.16676	1	24406	24406		49.933	2.1843	1	3466800	+		11700	20103	8343	8413	11435	11435					-0.005108575189069597
ELTRRPIFIT	10	Unmodified	_ELTRRPIFIT_					0	0	0		ENST00000534145.1_1_11:406812-407147:-|nuORF;ENST00000527295.5_1_11:406812-407130:-|nuORF;ENSG00000185187|ENST00000431843|SIGIRR;nc|ENSG00000185187|Q6IA17-2|SIGIRR	ENST00000534145.1_1_11:406812-407147:-|nuORF	ENST00000534145.1_1_11:406812-407147:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	416.61492919921875	3	415.915312	1244.72411	-0.40224	-0.0001673	0.37708	0.00015684	-0.025157	-1.0463E-05	415.9153040740839	38.501	0.25229	39.276	39.149	39.401	0.77451					6	4	2	0	0	0	0.94755	1	14207	14207		3.0723	0.22898	1	1026500			11701	8649	8344	8414	11436	11436					0.11153340731175376
ELTRTIENY	9	Unmodified	_ELTRTIENY_					0	0	0			REV__IFT57|p.H290Y|1|0.15|ENSG00000114446|chr3:108166967-108166967|G/A|missense_variant	REV__IFT57|p.H290Y|1|0.15|ENSG00000114446|chr3:108166967-108166967|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	569.7106323242188	2	569.790578	1137.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.957	1	24.587	24.087	25.087	0.63014								0	0	0	0.11332	1	7792	7792		37.974	7.3375	1		+		11702	26777	8345	8415	11437	11437					0.0033221640117062634
ELTRVQEMT	9	Unmodified	_ELTRVQEMT_					0	0	0			REV__ENSG00000151650|ENST00000325980|VENTX	REV__ENSG00000151650|ENST00000325980|VENTX	MSMS	A375_MHC_IP_R1	1	369.4445495605469	3	369.521863	1105.54376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.296	1	27.296	26.796	27.796	0								0	0	0	0.15486	1	8257	8257		4.1895	0.31317	1		+		11703	19764	8346	8416	11438	11438					-0.004791259879766585
ELTTDCSPGGV	11	Unmodified	_ELTTDCSPGGV_					0	0	0			REV__ENST00000548159.5_2_12:70637993-70671955:+|nuORF	REV__ENST00000548159.5_2_12:70637993-70671955:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	539.7181396484375	2	539.739696	1077.46484	-0.87729	-0.00047351	-1.7301	-0.00093379	-2.6074	-0.0014073	539.7378889231891	75.313	0.56141	76.054	75.875	76.436	0.74052					16	10	2	0	0	0	0.72949	1	28531	28531		9.3831	0.78985	1	1574200	+		11704	26013	8347	8417	11439	11439					-0.0707939801293378
ELTTSGRKM	9	Unmodified	_ELTTSGRKM_					0	0	0		ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	MULTI-MSMS	A375_MHC_IP_R2	2	513.1921997070312	2	511.768591	1021.52263	-0.68896	-0.00035259	0.57299	0.00029324	-0.11597	-5.9351E-05	511.768506509629	64.48	0.71371	65.22	64.8	65.513	0.74022					40	13	5	0	0	0	0.38603	1	24534	24534		25.399	25.399	1	5280300			11705	9456	8348	8418	11440	11440					0.012729087031743802
ELTWKLNEY	9	Unmodified	_ELTWKLNEY_					0	0	0			REV__nc|ENSG00000176155|Q2TAC2-2|CCDC57	REV__nc|ENSG00000176155|Q2TAC2-2|CCDC57	MULTI-SECPEP	A375_MHC_IP_R1	1	598.7031860351562	2	598.303321	1194.59209	-0.44552	-0.00026656	-0.18316	-0.00010958	-0.62868	-0.00037614	598.3031051831364	83.588	0.45721	83.588	83.329	83.786	0					14	8	2	0	0	0	0.69507	1	30609	30609		19.257	7.0163	1	2569500	+		11706	21389	8349	8419	11441	11441					0.0025769092355858447
ELTWKLNEY	9	Unmodified	_ELTWKLNEY_					0	0	0			REV__nc|ENSG00000176155|Q2TAC2-2|CCDC57	REV__nc|ENSG00000176155|Q2TAC2-2|CCDC57	MULTI-SECPEP	A375_MHC_IP_R2	2	598.6638793945312	2	598.303321	1194.59209	-0.54559	-0.00032643	-0.83977	-0.00050244	-1.3854	-0.00082887	598.3029748477535	82.754	0.40173	83.497	83.347	83.749	0.74293					14	7	2	0	0	0	0.69507	1	31434	31434		19.257	10.512	1	1887100	+		11707	21389	8349	8419	11442	11442					0.0025769092355858447
ELVARFLGV	9	Unmodified	_ELVARFLGV_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	A375_MHC_IP_R2	2	502.198974609375	2	502.300384	1002.58622	-0.62228	-0.00031257	0.32874	0.00016513	-0.29354	-0.00014744	502.30054981743535	102.38	0.81445	103.15	102.92	103.74	0.76428					20	15	2	0	0	0	0.55471	1	38881	38881		17.113	1.2657	1	2195300			11708	2197	8350	8420	11443	11443					0.08502637202582264
ELVCARWNL	9	Unmodified	_ELVCARWNL_					0	0	0		ENST00000477790.1_1_10:38385521-38404340:+|nuORF	ENST00000477790.1_1_10:38385521-38404340:+|nuORF	ENST00000477790.1_1_10:38385521-38404340:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	368.9266662597656	3	368.52706	1102.55935	-0.14192	-5.2301E-05	-0.22161	-8.1668E-05	-0.36352	-0.00013397	368.52695494458186	24.696	0.2019	25.339	25.212	25.414	0.64368					6	3	2	0	0	0	0.78348	1	8166	8166		0.20686	0.20686	1	8801600			11709	12447	8351	8421	11444	11444					0.012172053197218702
ELVCYLVSGV	10	Unmodified	_ELVCYLVSGV_					0	0	0			REV__ENSG00000162227|ENST00000294168|TAF6L	REV__ENSG00000162227|ENST00000294168|TAF6L	MULTI-MSMS	A375_MHC_IP_R2	2	541.6824340820312	2	541.283543	1080.55253	-1.0437	-0.00056492	-0.60506	-0.00032751	-1.6487	-0.00089242	541.2834334190851	72.143	1.316	72.878	72.213	73.529	0.73421					39	25	3	0	0	0	0.48529	1	27369	27369		29.082	5.2918	1	4012900	+		11710	20240	8352	8422	11445	11445					0.015478476484986459
ELVERLADL	9	Unmodified	_ELVERLADL_					0	0	0			REV__ENSG00000119401|ENST00000450136|TRIM32	REV__ENSG00000119401|ENST00000450136|TRIM32	MULTI-SECPEP	A375_MHC_IP_R2	2	529.21826171875	2	529.298039	1056.58152	-0.37794	-0.00020004	-1.0974	-0.00058083	-1.4753	-0.00078087	529.2978793412942	94.141	0.45485	94.886	94.667	95.122	0.74474					18	8	3	0	0	0	0.3213	1	35808	35808		24.021	0	1	1458000	+		11711	18070	8353	8423	11446	11446					0.0554970826913177
ELVGALYALY	10	Unmodified	_ELVGALYALY_					0	0	0			REV__PDE3A|p.G248E|1|0.1|ENSG00000172572|chr12:20370027-20370027|G/A|missense_variant	REV__PDE3A|p.G248E|1|0.1|ENSG00000172572|chr12:20370027-20370027|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	556.7051391601562	2	556.305332	1110.59611	-0.67769	-0.000377	0.08398	4.6718E-05	-0.59371	-0.00033028	556.3050467497148	109.43	0.55602	110.17	109.83	110.38	0.74683					22	10	3	0	0	0	0.57563	1	41269	41269		32.305	0	1	2761600	+		11712	27754	8354	8424	11447	11447					0.0452378041729844
ELVGRLRREPY	11	Unmodified	_ELVGRLRREPY_					0	0	0			REV__nc|ENSG00000115155|Q9HC10-4|OTOF	REV__nc|ENSG00000115155|Q9HC10-4|OTOF	MSMS	A375_MHC_IP_R1	1	694.194091796875	2	694.393867	1386.77318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.42	1	85.42	84.92	85.92	0								0	0	0	0.16249	1	31305	31305		5.7319	0.43497	1		+		11713	17857	8355	8425	11448	11448					0.09526629020137989
ELVKKYRNA	9	Unmodified	_ELVKKYRNA_					0	0	0		ENST00000558906.5_1_15:50152393-50311102:-|nuORF;ENST00000559726.5_1_15:50152393-50311102:-|nuORF;ENSG00000104043|ENST00000284509|ATP8B4;ENST00000560161.1_1_15:50178110-50190397:-|nuORF;ENST00000561385.5_1_15:50189347-50194027:-|nuORF	ENST00000558906.5_1_15:50152393-50311102:-|nuORF	ENST00000558906.5_1_15:50152393-50311102:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	374.30096435546875	3	374.220624	1119.64004	-0.040924	-1.5315E-05	-0.16382	-6.1306E-05	-0.20475	-7.662E-05	374.2205158981599	29.123	0.45741	29.123	28.845	29.302	0					14	8	3	0	0	0	0.59614	1	9009	9009		17.443	5.2679	1	2846700			11714	2479	8356	8426	11449	11449					0.08500809634278994
ELVKLMCEL	9	Unmodified	_ELVKLMCEL_					0	0	0		ENST00000576594.1_1_17:7251274-7251541:+|nuORF;ENSG00000072818|ENST00000158762|ACAP1	ENST00000576594.1_1_17:7251274-7251541:+|nuORF	ENST00000576594.1_1_17:7251274-7251541:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	540.5928344726562	2	539.287771	1076.56099	-0.44073	-0.00023768	-0.38643	-0.0002084	-0.82716	-0.00044608	539.2875326223518	71.64	0.70464	71.64	71.364	72.069	0					34	13	3	0	0	0	0.63811	1	26077	26077		12.532	0	1	22906000			11715	1549	8357	8427	11450	11450					0.025770782934614545
ELVLMELIQE	10	Unmodified	_ELVLMELIQE_					0	0	0			REV__nc|ENSG00000186376|P51815-2|ZNF75D	REV__nc|ENSG00000186376|P51815-2|ZNF75D	MULTI-MSMS	A375_MHC_IP_R1	1	406.62054443359375	3	406.221302	1215.64208	-0.19172	-7.7881E-05	-0.88118	-0.00035795	-1.0729	-0.00043584	406.22085167809763	68.895	0.35323	68.895	68.666	69.02	0					14	6	3	0	0	0	0.23154	1	25009	25009		46.022	0	1	1938000	+		11716	21966	8358	8428	11451	11451					0.04288057537223722
ELVSHAPEP	9	Unmodified	_ELVSHAPEP_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	A375_MHC_IP_R1	1	490.1664733886719	2	489.748182	977.481811	-0.27602	-0.00013518	0.72984	0.00035744	0.45382	0.00022226	489.74831580145843	52.198	0.91651	52.198	51.879	52.796	0					30	17	4	0	0	0	0.58047	1	18546	18546		15.847	1.2655	1	3116500	+		11717	20029	8359	8429	11452	11452					-0.007831093448089632
ELVSTDSYY	9	Unmodified	_ELVSTDSYY_					0	0	0			REV__tr|U7SKK2|U7SKK2_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02018PE=4SV=1	REV__tr|U7SKK2|U7SKK2_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02018PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	539.1476440429688	2	538.742762	1075.47097	-0.50574	-0.00027247	0.030275	1.631E-05	-0.47547	-0.00025616	538.7428503049149	71.384	0.45641	71.384	71.159	71.615	0					13	8	2	0	0	0	0.63811	1	25873	25873		12.532	0.89125	1	1523900	+		11718	28255	8360	8430	11453	11453					-0.06374556509740614
ELVTASTT	8	Unmodified	_ELVTASTT_					0	0	0		nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1;ENST00000517413.5_1_8:17512046-17533895:-|nuORF;nc|ENSG00000129422|Q9ULD2-4|MTUS1;nc|ENSG00000129422|Q9ULD2-7|MTUS1;nc|ENSG00000129422|Q9ULD2-3|MTUS1;nc|ENSG00000129422|Q9ULD2-6|MTUS1	nc|ENSG00000129422|Q9ULD2-2|MTUS1	nc|ENSG00000129422|Q9ULD2-2|MTUS1	MULTI-SECPEP	A375_MHC_IP_R1	1	822.12353515625	1	821.42509	820.417813	-0.36199	-0.00029735	3.206	0.0026335	2.844	0.0023361	821.426206400681	125.53	0.25262	125.53	125.45	125.7	0					6	4	2	0	0	0	0.96266	1	47809	47809		16.942	11.182	1	10287000			11719	4190	8361	8431	11454	11454					0.000421104982478937
ELVTGVLWN	9	Unmodified	_ELVTGVLWN_					0	0	0		ENSG00000144283|ENST00000389759|PKP4;nc|ENSG00000144283|Q99569-2|PKP4	ENSG00000144283|ENST00000389759|PKP4	ENSG00000144283|ENST00000389759|PKP4	MSMS	A375_MHC_IP_R2	2	515.70751953125	2	515.782025	1029.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.005	1	83.744	83.244	84.244	0.73962								0	0	0	0.11922	1	31542	31542		36.127	0.082828	1				11720	5476	8362	8432	11455	11455					0.035903405860153725
ELVTSPHNY	9	Unmodified	_ELVTSPHNY_					0	0	0		nc|nan|Q9H972-2|C14orf93;ENSG00000100802|ENST00000299088|C14orf93	nc|nan|Q9H972-2|C14orf93	nc|nan|Q9H972-2|C14orf93	MULTI-MSMS	A375_MHC_IP_R1	1	530.1786499023438	2	530.258914	1058.50327	-0.71573	-0.00037952	0.50114	0.00026573	-0.21459	-0.00011379	530.7606861381713	80.798	0.20409	80.798	80.693	80.897	0					6	3	2	0	0	0	0.64808	1	29480	29480		11.64	2.2572	1	617010			11721	2220	8363	8433	11456	11456					-0.023637243160919752
ELWDERHRQYE	11	Unmodified	_ELWDERHRQYE_					0	0	0		nc|ENSG00000163554|P02549-2|SPTA1;ENSG00000163554|ENST00000643759|SPTA1	nc|ENSG00000163554|P02549-2|SPTA1	nc|ENSG00000163554|P02549-2|SPTA1	MSMS	A375_MHC_IP_R2	2	780.6134643554688	2	780.863128	1559.7117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.38	1	115.09	114.59	115.59	0.70985								0	0	0	0.16297	1	43121	43121		3.2813	0.54611	1				11722	6683	8364	8434	11457	11457					-0.045763474698333084
ELWEWHETIEK	11	Unmodified	_ELWEWHETIEK_					0	0	0			REV__ENSG00000109436|ENST00000442267|TBC1D9	REV__ENSG00000109436|ENST00000442267|TBC1D9	MSMS	A375_MHC_IP_R2	2	500.474609375	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.586	1	99.346	98.846	99.846	0.75977								0	0	0	0.16307	1	37400	37400		1.1098	0.6038	1		+		11723	17578	8365	8435	11458	11458					-0.02016195927467379
ELWEWHETIEK	11	Unmodified	_ELWEWHETIEK_					0	0	0			REV__ENSG00000109436|ENST00000442267|TBC1D9	REV__ENSG00000109436|ENST00000442267|TBC1D9	MSMS	A375_MHC_IP_R2	2	500.4748840332031	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.05	1	106.81	106.31	107.31	0.75977								0	0	0	0.16334	1	40096	40096		0.45452	0	1		+		11724	17578	8365	8435	11459	11459					-0.02016195927467379
ELWGLYTA	8	Unmodified	_ELWGLYTA_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MULTI-SECPEP	A375_MHC_IP_R1	1	477.1423034667969	2	476.742368	951.470183	-0.43512	-0.00020744	0.39949	0.00019045	-0.035637	-1.699E-05	476.74246260990395	105.05	0.70965	105.05	104.64	105.35	0					31	13	3	0	0	0	0.8211	1	38544	38544		23.148	0	1	3031100	+		11725	20498	8366	8436	11460	11460					-0.007493063681408785
ELWGLYTA	8	Unmodified	_ELWGLYTA_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MULTI-SECPEP	A375_MHC_IP_R2	2	477.141845703125	2	476.742368	951.470183	-0.48116	-0.00022939	-0.36992	-0.00017635	-0.85107	-0.00040574	476.74217980634415	104.25	0.66125	105.02	104.7	105.36	0.76308					24	12	2	0	0	0	0.8824	1	39426	39426		23.148	6.2061	1	2975400	+		11726	20498	8366	8436	11461	11461					-0.007493063681408785
ELWLETFGL	9	Unmodified	_ELWLETFGL_					0	0	0			REV__ENST00000357640.8_1_1:111743121-111743307:-|nuORF	REV__ENST00000357640.8_1_1:111743121-111743307:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	554.689697265625	2	554.289682	1106.56481	-0.6344	-0.00035164	-0.75872	-0.00042055	-1.3931	-0.00077219	554.2893024411251	129.12	0.35757	129.12	128.94	129.3	0					14	6	3	0	0	0	0.35581	1	49607	49607		26.884	0.61551	1	33342000	+		11727	23844	8367	8437	11462	11462					0.015792073832017195
ELWLETFGL	9	Unmodified	_ELWLETFGL_					0	0	0			REV__ENST00000357640.8_1_1:111743121-111743307:-|nuORF	REV__ENST00000357640.8_1_1:111743121-111743307:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	554.6893310546875	2	554.289682	1106.56481	-0.8345	-0.00046255	0.008069	4.4725E-06	-0.82643	-0.00045808	554.2897223331584	128.79	0.40489	129.03	128.91	129.31	0.23946					15	7	3	0	0	0	0.17328	1	50624	50624		39.957	39.957	1	17076000	+		11728	23844	8367	8437	11463	11463					0.015792073832017195
ELWLETFGL	9	Unmodified	_ELWLETFGL_					0	0	0			REV__ENST00000357640.8_1_1:111743121-111743307:-|nuORF	REV__ENST00000357640.8_1_1:111743121-111743307:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	554.289682	1106.56481	-0.6344	-0.00035164	-0.75872	-0.00042055	-1.3931	-0.00077219	554.2893024411251	129.12	0.35757	129.12	128.94	129.3	0	0.044213	-0.00071361	NaN	39.957	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33342000	+		11729	23844	8367	8437							0.015792073832017195
ELWLETFGL	9	Unmodified	_ELWLETFGL_					0	0	0			REV__ENST00000357640.8_1_1:111743121-111743307:-|nuORF	REV__ENST00000357640.8_1_1:111743121-111743307:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	554.289682	1106.56481	-0.8345	-0.00046255	0.008069	4.4725E-06	-0.82643	-0.00045808	554.2897223331584	128.79	0.40489	129.03	128.91	129.31	0.23946	-0.044213	0.00013643	NaN	39.957	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17076000	+		11730	23844	8367	8437							0.015792073832017195
ELWLLQFP	8	Unmodified	_ELWLLQFP_					0	0	0		ENST00000543845.1_12:9099415-9102159:-|nuORF;ENST00000544245.1_12:9098936-9102159:-|nuORF;ENST00000000412.3_12:9098936-9102159:-|nuORF	ENST00000543845.1_12:9099415-9102159:-|nuORF	ENST00000543845.1_12:9099415-9102159:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	522.7078247070312	2	523.289485	1044.56442	-0.92159	-0.00048226	4.2544	0.0022263	3.3328	0.001744	523.2917750708119	33.317	0.70877	34.069	33.891	34.6	0.75225					31	13	3	0	0	0	0.8824	1	12150	12150		23.148	0	1	6746600			11731	10056	8368	8438	11464	11464					0.04391832454030009
ELWLMHDI	8	Unmodified	_ELWLMHDI_					0	0	0			REV__ENSG00000184924|ENST00000328379|PTRHD1	REV__ENSG00000184924|ENST00000328379|PTRHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	352.2662048339844	3	352.844277	1055.511	-0.29564	-0.00010432	0.088663	3.1284E-05	-0.20698	-7.3032E-05	352.8442848589725	27.893	0.20098	27.893	27.786	27.987	0					5	3	2	0	0	0	0.972	1	8488	8488		1.6526	0	1	803590	+		11732	21847	8369	8439	11465	11465					-0.014532883201809454
ELWLRNNSI	9	Unmodified	_ELWLRNNSI_					0	0	0		LRRC4C|p.P159S|1|0.09|ENSG00000148948|chr11:40115818-40115818|G/A|missense_variant	LRRC4C|p.P159S|1|0.09|ENSG00000148948|chr11:40115818-40115818|G/A|missense_variant	LRRC4C|p.P159S|1|0.09|ENSG00000148948|chr11:40115818-40115818|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	572.7078247070312	2	572.809105	1143.60366	-0.18514	-0.00010605	2.9015	0.001662	2.7163	0.0015559	573.3129807828894	88.201	1.0129	88.933	88.418	89.431	0.7318					35	19	3	0	0	0	0.73363	1	33516	33516		10.824	0	1	2758200			11733	14318	8370	8440	11466	11466					0.03759932737557392
ELWNQGEKY	9	Unmodified	_ELWNQGEKY_					0	0	0			REV__ENST00000591406.1_1_18:56822908-56825914:+|nuORF	REV__ENST00000591406.1_1_18:56822908-56825914:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	390.27117919921875	3	389.520739	1165.54039	-0.58745	-0.00022882	0.46203	0.00017997	-0.12542	-4.8852E-05	389.85521751687907	25.05	0.40853	25.693	25.568	25.976	0.64368					11	7	2	0	0	0	0.73363	1	8305	8305		7.1017	2.0542	1	4449600	+		11734	26444	8371	8441	11467	11467					-0.03576052770313254
ELWRAIMDI	9	Unmodified	_ELWRAIMDI_					0	0	0		nc|ENSG00000151687|Q7Z5J8-2|ANKAR;ENSG00000151687|ENST00000684021|ANKAR;ANKAR|p.F171L|1|0.25|ENSG00000151687|chr2:189677001-189677001|T/C|missense_variant	nc|ENSG00000151687|Q7Z5J8-2|ANKAR	nc|ENSG00000151687|Q7Z5J8-2|ANKAR	MSMS	A375_MHC_IP_R2	2	573.703125	2	573.802434	1145.59032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.977	1	67.713	67.213	68.213	0.73631								0	0	0	0.15411	1	25374	25374		14.838	0	1				11735	5919	8372	8442	11468	11468					0.02334358633993361
ELWRKNYNNTW	11	Unmodified	_ELWRKNYNNTW_					0	0	0		ENSG00000143061|ENST00000369486|IGSF3;nc|ENSG00000143061|O75054-2|IGSF3	ENSG00000143061|ENST00000369486|IGSF3	ENSG00000143061|ENST00000369486|IGSF3	MULTI-SECPEP	A375_MHC_IP_R1	1	507.980224609375	3	508.584513	1522.73171	-0.7597	-0.00038637	1.3641	0.00069378	0.60444	0.00030741	508.58475848205944	67.452	0.50653	67.452	67.348	67.854	0					11	9	2	0	0	0	0.99681	1	24418	24418		1.1098	0	1	482910			11736	5343	8373	8443	11469	11469					-0.00874551739184426
ELWVLATNF	9	Unmodified	_ELWVLATNF_					0	0	0		ENSG00000267206|ENST00000341206|LCN6	ENSG00000267206|ENST00000341206|LCN6	ENSG00000267206|ENST00000341206|LCN6	MULTI-MSMS	A375_MHC_IP_R1	1	547.1896362304688	2	546.78985	1091.56515	-0.40401	-0.00022091	0.1958	0.00010706	-0.20821	-0.00011385	546.7898327228895	110.9	0.61482	110.9	110.59	111.21	0					27	11	3	0	0	0	0.084766	1	40617	40617		58.679	26.373	1	3427500			11737	9964	8374	8444	11470	11470					0.023026271030403223
ELWVLATNF	9	Unmodified	_ELWVLATNF_					0	0	0		ENSG00000267206|ENST00000341206|LCN6	ENSG00000267206|ENST00000341206|LCN6	ENSG00000267206|ENST00000341206|LCN6	MULTI-MSMS	A375_MHC_IP_R2	2	547.190185546875	2	546.78985	1091.56515	-0.63931	-0.00034957	-0.1419	-7.7589E-05	-0.78121	-0.00042716	546.7896942001958	110.13	0.56351	110.86	110.58	111.14	0.73692					22	10	3	0	0	0	0.068071	1	41523	41523		62.573	26.446	1	3269700			11738	9964	8374	8444	11471	11471					0.023026271030403223
ELWVVMEY	8	Unmodified	_ELWVVMEY_					0	0	0		ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;ENSG00000077264|ENST00000372007|PAK3;nc|ENSG00000077264|O75914|PAK3;nc|ENSG00000077264|O75914-4|PAK3;nc|ENSG00000077264|O75914-3|PAK3;ENST00000532711.1_1_11:77047303-77054976:-|nuORF	ENSG00000149269|ENST00000356341|PAK1	ENSG00000149269|ENST00000356341|PAK1	MULTI-SECPEP	A375_MHC_IP_R1	1	357.6119384765625	3	356.840533	1067.49977	0.22807	8.1384E-05	1.2721	0.00045393	1.5002	0.00053532	356.84087168045625	43.188	0.25694	43.188	43.043	43.3	0					6	4	2	0	0	0	0.972	1	14998	14998		1.6526	0	1	666380			11739	5795	8375	8445	11472	11472					-0.031281104142863114
ELWVVMEY	8	Unmodified	_ELWVVMEY_					0	0	0		ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;ENSG00000077264|ENST00000372007|PAK3;nc|ENSG00000077264|O75914|PAK3;nc|ENSG00000077264|O75914-4|PAK3;nc|ENSG00000077264|O75914-3|PAK3;ENST00000532711.1_1_11:77047303-77054976:-|nuORF	ENSG00000149269|ENST00000356341|PAK1	ENSG00000149269|ENST00000356341|PAK1	MULTI-MATCH	A375_MHC_IP_R2	2		3	356.840533	1067.49977	-0.15475	-5.5221E-05	0.53091	0.00018945	0.37616	0.00013423	356.84066693173526	42.149	0.30775	42.921	42.757	43.065	0.7724	-0.13353	-0.00040592	NaN	1.6526	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1150700			11740	5795	8375	8445							-0.031281104142863114
ELWWLRHRVYI	11	Unmodified	_ELWWLRHRVYI_					0	0	0		ENST00000269214.9_1_18:19155363-19155703:-|nuORF	ENST00000269214.9_1_18:19155363-19155703:-|nuORF	ENST00000269214.9_1_18:19155363-19155703:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	524.69384765625	3	524.292894	1569.85685	-0.54249	-0.00028442	1.0851	0.00056893	0.54264	0.0002845	524.2935330172941	74.316	0.66042	75.053	74.604	75.264	0.73751					15	12	2	0	0	0	1.0014	1	28198	28198		0.45452	0.45452	1	2352500			11741	10367	8376	8446	11473	11473					0.0947178518781584
ELYDSLEMY	9	Unmodified	_ELYDSLEMY_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1;PACS1|p.N377S|1|0.21|ENSG00000175115|chr11:66220722-66220722|A/G|missense_variant;ENST00000534273.1_1_11:65988146-65988913:+|nuORF	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	MULTI-MSMS	A375_MHC_IP_R2	2	582.226318359375	2	581.752272	1161.48999	-0.248	-0.00014427	-0.67016	-0.00038987	-0.91816	-0.00053414	582.2540716088542	90.629	0.60785	91.364	91.058	91.666	0.73451					17	11	2	0	0	0	0.5339	1	34515	34515		18.135	2.2878	1	975590			11742	7935	8377	8447	11474	11474					-0.08429343210355
ELYGEKFDDE	10	Unmodified	_ELYGEKFDDE_					0	0	0			REV__nc|ENSG00000008517|P24001-4|IL32	REV__nc|ENSG00000008517|P24001-4|IL32	MSMS	A375_MHC_IP_R1	1	622.6603393554688	2	622.769508	1243.52446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.52	1	92.52	92.02	93.02	0								0	0	0	0.15435	1	34002	34002		6.7232	0	1		+		11743	16176	8378	8448	11475	11475					-0.08755803797907902
ELYIYYSY	8	Unmodified	_ELYIYYSY_					0	0	0			REV__tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	REV__tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	557.6820068359375	2	557.260591	1112.50663	-0.77063	-0.00042944	-2.7259	-0.001519	-3.4965	-0.0019485	557.258672736769	66.574	0.51198	66.574	66.478	66.99	0					12	9	2	0	0	0	0.95423	1	24266	24266		12.532	0	1	824630	+		11744	28730	8379	8449	11476	11476					-0.04512474262082833
ELYKQRLD	8	Unmodified	_ELYKQRLD_					0	0	0		nc|ENSG00000008226|Q9Y238-2|DLEC1;ENSG00000008226|ENST00000308059|DLEC1;nc|ENSG00000008226|Q9Y238-3|DLEC1;ENST00000440294.6_1_3:38080716-38136583:+|nuORF	nc|ENSG00000008226|Q9Y238-2|DLEC1	nc|ENSG00000008226|Q9Y238-2|DLEC1	MSMS	A375_MHC_IP_R2	2	532.6979370117188	2	532.790381	1063.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.884	1	54.635	54.135	55.135	0.75105								0	0	0	0.16876	1	20344	20344		39.957	0.0076237	1				11745	955	8380	8450	11477	11477					0.036968414719467546
ELYLCMGHR	9	Unmodified	_ELYLCMGHR_					0	0	0			REV__nc|ENSG00000065243|Q16513-2|PKN2	REV__nc|ENSG00000065243|Q16513-2|PKN2	MSMS	A375_MHC_IP_R2	2	561.1975708007812	2	561.265161	1120.51577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.627	1	59.376	58.876	59.876	0.74894								0	0	0	0.15283	1	22180	22180		16.942	3.0362	1		+		11746	16490	8381	8451	11478	11478					-0.03966727449051177
ELYNVHCNP	9	Unmodified	_ELYNVHCNP_					0	0	0			REV__PCSK5|p.R500C|1|0.29|ENSG00000099139|chr9:76159050-76159050|C/T|missense_variant	REV__PCSK5|p.R500C|1|0.29|ENSG00000099139|chr9:76159050-76159050|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	544.634033203125	2	544.745116	1087.47568	-0.72869	-0.00039695	1.3834	0.00075358	0.65467	0.00035663	544.7461788176488	69.804	0.35767	70.538	70.233	70.591	0.73421					9	6	2	0	0	0	0.73363	1	26437	26437		10.824	5.5933	1	621900	+		11747	27747	8382	8452	11479	11479					-0.06455950847976055
ELYNVHCNP	9	Unmodified	_ELYNVHCNP_					0	0	0			REV__PCSK5|p.R500C|1|0.29|ENSG00000099139|chr9:76159050-76159050|C/T|missense_variant	REV__PCSK5|p.R500C|1|0.29|ENSG00000099139|chr9:76159050-76159050|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	544.745116	1087.47568	-0.44552	-0.00024269	1.1257	0.0006132	0.68014	0.0003705	545.2471847906024	70.494	0.3087	70.494	70.237	70.545	0	-0.021918	-0.00010222	NaN	10.824	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	567890	+		11748	27747	8382	8452							-0.06455950847976055
ELYQMYWA	8	Unmodified	_ELYQMYWA_					0	0	0			REV__nc|ENSG00000175727|Q9HAP2-3|MLXIP	REV__nc|ENSG00000175727|Q9HAP2-3|MLXIP	MULTI-SECPEP	A375_MHC_IP_R2	2	551.7138671875	2	552.24696	1102.47937	-0.69216	-0.00038224	1.2173	0.00067226	0.52516	0.00029002	552.2467606640613	89.561	0.20348	90.293	90.135	90.339	0.7318					5	3	2	0	0	0	0.972	1	34053	34053		4.756	0	1	360870	+		11749	21362	8383	8453	11480	11480					-0.06777281074118946
ELYQRWERYRR	11	Unmodified	_ELYQRWERYRR_					0	0	0		nc|ENSG00000010310|P48546-2|GIPR;nc|ENSG00000010310|P48546-3|GIPR;ENSG00000010310|ENST00000590918|GIPR	nc|ENSG00000010310|P48546-2|GIPR	nc|ENSG00000010310|P48546-2|GIPR	MULTI-SECPEP	A375_MHC_IP_R2	2	552.7053833007812	3	552.290212	1653.84881	-0.74145	-0.00040949	3.256	0.0017983	2.5146	0.0013888	552.6258066662976	103.8	0.30315	104.56	104.35	104.65	0.76428					6	5	2	0	0	0	1.0012	1	39234	39234		1.1098	0.6038	1	655120			11750	978	8384	8454	11481	11481					0.0480360620040301
ELYRKYEMQYA	11	Unmodified	_ELYRKYEMQYA_					0	0	0		ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1	ENSG00000157106|ENST00000446231|SMG1	ENSG00000157106|ENST00000446231|SMG1	MSMS	A375_MHC_IP_R1	1	498.6612548828125	3	498.574627	1492.70205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.877	1	45.877	45.377	46.377	0								0	0	0	0.16309	1	16072	16072		2.6312	0	1				11751	6228	8385	8455	11482	11482					-0.02459251799541562
ELYSGNMFK	9	Unmodified	_ELYSGNMFK_					0	0	0		ENST00000251810.7_1_8:103218186-103218420:-|nuORF	ENST00000251810.7_1_8:103218186-103218420:-|nuORF	ENST00000251810.7_1_8:103218186-103218420:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	363.941162109375	3	363.507554	1087.50083	-0.18455	-6.7085E-05	-2.0717	-0.00075308	-2.2563	-0.00082017	363.50731364460165	51.061	0.85989	51.815	51.462	52.322	0.75406					34	16	3	0	0	0	0.71541	1	19121	19121		2.2828	0.69049	1	2107200			11752	10206	8386	8456	11483	11483					-0.039418960453986074
ELYVKRQRGLL	11	Unmodified	_ELYVKRQRGLL_					0	0	0			REV__nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1	REV__nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1	MULTI-MSMS	A375_MHC_IP_R2	2	459.6792297363281	3	458.945383	1373.81432	-0.17423	-7.9963E-05	-0.57348	-0.0002632	-0.74771	-0.00034316	459.2795162862701	143.1	0.6588	143.14	142.79	143.45	0.030731					18	12	2	0	0	0	0.73881	1	55944	55944		0.50596	0	1	1545800	+		11753	17168	8387	8457	11484	11484					0.14236390059613768
EMADRYDRL	9	Unmodified	_EMADRYDRL_					0	0	0		ENST00000463285.5_1_1:41461708-41469783:+|nuORF;nc|ENSG00000171793|P17812-2|CTPS1;ENSG00000171793|ENST00000650070|CTPS1	ENST00000463285.5_1_1:41461708-41469783:+|nuORF	ENST00000463285.5_1_1:41461708-41469783:+|nuORF	MSMS	A375_MHC_IP_R2	2	584.7418212890625	2	584.774405	1167.53426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.173	1	60.92	60.42	61.42	0.74714								0	0	0	0.15411	1	22777	22777		14.838	3.3436	1				11754	7639	8388	8458	11485	11485					-0.042808942735291566
EMALSKNALS	10	Unmodified	_EMALSKNALS_					0	0	0		ENST00000535889.5_1_1:237023169-237023217:+|nuORF	ENST00000535889.5_1_1:237023169-237023217:+|nuORF	ENST00000535889.5_1_1:237023169-237023217:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	532.1857299804688	2	532.276249	1062.53795	-0.61809	-0.000329	-3.2581	-0.0017342	-3.8762	-0.0020632	532.2757608643919	64.465	0.30632	65.205	65.054	65.361	0.74023					7	5	2	0	0	0	0.77204	1	24453	24453		21.537	4.5947	1	482580			11755	13232	8389	8459	11486	11486					0.00917775500352036
EMCNTTDALTL	11	Unmodified	_EMCNTTDALTL_					0	0	0			REV__ENST00000529433.5_1_11:1478266-1482216:+|nuORF	REV__ENST00000529433.5_1_11:1478266-1482216:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	606.6676025390625	2	606.267764	1210.52097	-0.50233	-0.00030455	-0.40932	-0.00024816	-0.91166	-0.00055271	606.2675840428651	72.641	0.8133	73.377	73.022	73.836	0.73541					24	15	3	0	0	0	0.67565	1	27569	27569		17.443	1.2935	1	3050000	+		11756	25822	8390	8460	11487	11487					-0.0758651316778014
EMDAALHYY	9	Unmodified	_EMDAALHYY_					0	0	0		nc|ENSG00000187535|Q96RY7-2|IFT140;ENSG00000187535|ENST00000426508|IFT140;ENST00000565298.5_1_16:1574507-1576156:-|nuORF	nc|ENSG00000187535|Q96RY7-2|IFT140	nc|ENSG00000187535|Q96RY7-2|IFT140	MULTI-SECPEP	A375_MHC_IP_R1	1	556.2001342773438	2	556.739499	1111.46445	-0.58675	-0.00032667	-0.73758	-0.00041064	-1.3243	-0.00073731	556.7393323894152	61.108	0.40842	61.108	60.922	61.331	0					13	7	2	0	0	0	0.67221	1	22088	22088		8.5933	4.264	1	1165700			11757	8832	8391	8461	11488	11488					-0.08682772942142947
EMDSERLQY	9	Unmodified	_EMDSERLQY_					0	0	0		nc|ENSG00000110841|Q86W92-3|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;ENST00000534917.1_1_12:27807636-27809701:+|nuORF	nc|ENSG00000110841|Q86W92-3|PPFIBP1;ENST00000534917.1_1_12:27807636-27809701:+|nuORF	nc|ENSG00000110841|Q86W92-3|PPFIBP1	MULTI-MSMS	A375_MHC_IP_R1	1	586.1575927734375	2	585.75842	1169.50229	-0.33771	-0.00019782	-0.32567	-0.00019076	-0.66338	-0.00038858	585.7583586953201	40.961	0.60557	40.961	40.66	41.266	0					21	11	3	0	0	0	0.010055	2	14075	14015;14075		125.53	87.555	1	6949300			11758	14540;13218	8392	8462	11489;11490	11490					-0.07568306747293718
EMDSERLQY	9	Unmodified	_EMDSERLQY_					0	0	0		nc|ENSG00000110841|Q86W92-3|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;ENST00000534917.1_1_12:27807636-27809701:+|nuORF	nc|ENSG00000110841|Q86W92-3|PPFIBP1;ENST00000534917.1_1_12:27807636-27809701:+|nuORF	nc|ENSG00000110841|Q86W92-3|PPFIBP1	MULTI-MSMS	A375_MHC_IP_R2	2	586.1582641601562	2	585.75842	1169.50229	-0.57558	-0.00033715	0.16349	9.5767E-05	-0.41209	-0.00024138	585.7584757387017	40.289	0.55798	41.064	40.727	41.285	0.77451					25	10	3	0	0	0	0.0014143	1	14883	14883		149.91	111.94	1	8821900			11759	14540;13218	8392	8462	11491	11491					-0.07568306747293718
EMDSERLQY	9	Oxidation (M)	_EM(Oxidation (M))DSERLQY_		EM(1)DSERLQY		EM(130)DSERLQY	0	0	1		nc|ENSG00000110841|Q86W92-3|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;ENST00000534917.1_1_12:27807636-27809701:+|nuORF	nc|ENSG00000110841|Q86W92-3|PPFIBP1;ENST00000534917.1_1_12:27807636-27809701:+|nuORF	nc|ENSG00000110841|Q86W92-3|PPFIBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	594.1556396484375	2	593.755878	1185.4972	-0.3717	-0.0002207	0.022993	1.3652E-05	-0.3487	-0.00020704	593.7559671900161	31.409	0.60828	31.409	31.211	31.819	0					27	11	4	0	0	0	0.011066	1	10041	10041		125.53	94.893	1	11215000			11760	14540;13218	8392	8463	11492	11492		462			-0.08812610609925287
EMDSERLQY	9	Oxidation (M)	_EM(Oxidation (M))DSERLQY_		EM(1)DSERLQY		EM(130)DSERLQY	0	0	1		nc|ENSG00000110841|Q86W92-3|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;ENST00000534917.1_1_12:27807636-27809701:+|nuORF	nc|ENSG00000110841|Q86W92-3|PPFIBP1;ENST00000534917.1_1_12:27807636-27809701:+|nuORF	nc|ENSG00000110841|Q86W92-3|PPFIBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	594.1553955078125	2	593.755878	1185.4972	-0.59249	-0.00035179	0.084388	5.0106E-05	-0.5081	-0.00030169	593.7560304391476	30.828	0.60505	31.546	31.216	31.821	0.71857					28	11	4	0	0	0	0.011357	1	10842	10842		125.53	100.13	1	13057000			11761	14540;13218	8392	8463	11493	11493		462			-0.08812610609925287
EMDSHKETK	9	Unmodified	_EMDSHKETK_					0	0	0		CCDC186|p.A401V|1|0.44|ENSG00000165813|chr10:114144516-114144516|G/A|missense_variant;ENSG00000165813|ENST00000369287|CCDC186	CCDC186|p.A401V|1|0.44|ENSG00000165813|chr10:114144516-114144516|G/A|missense_variant	CCDC186|p.A401V|1|0.44|ENSG00000165813|chr10:114144516-114144516|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	552.7089233398438	2	552.753138	1103.49172	-0.23634	-0.00013064	-2.4956	-0.0013795	-2.732	-0.0015101	552.7521646323098	44.515	0.71724	44.515	44.01	44.727	0					19	13	2	0	0	0	0.68705	1	15485	15485		8.1555	1.4324	1	2668200			11762	312	8393	8464	11494	11494					-0.05588289401748625
EMEDDYDYY	9	Unmodified	_EMEDDYDYY_					0	0	0		nc|ENSG00000181722|Q9HC78-2|ZBTB20;ENSG00000181722|ENST00000675478|ZBTB20	nc|ENSG00000181722|Q9HC78-2|ZBTB20	nc|ENSG00000181722|Q9HC78-2|ZBTB20	MSMS	A375_MHC_IP_R2	2	621.713134765625	2	621.710802	1241.40705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.615	1	85.351	84.851	85.851	0.73601								0	0	0	0.15486	1	32167	32167		12.532	7.7755	1				11763	8357	8394	8465	11495	11495					-0.20399704729015866
EMELAAPERL	10	Unmodified	_EMELAAPERL_					0	0	0			REV__ENST00000426755.5_1_3:196366735-196443731:+|nuORF	REV__ENST00000426755.5_1_3:196366735-196443731:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	387.2839660644531	3	386.865629	1157.57506	0.076292	2.9515E-05	-1.6108	-0.00062318	-1.5345	-0.00059366	386.8645916643591	37.918	0.4598	37.918	37.658	38.118	0					14	8	2	0	0	0	0.89761	1	12866	12866		19.626	17.343	1	1726300	+		11764	24656	8395	8466	11496	11496					0.0025744704612407077
EMEPDPTLNL	10	Unmodified	_EMEPDPTLNL_					0	0	0			REV__nc|ENSG00000135596|Q8TDZ2-3|MICAL1	REV__nc|ENSG00000135596|Q8TDZ2-3|MICAL1	MULTI-MSMS	A375_MHC_IP_R1	1	579.7297973632812	2	579.770997	1157.52744	-0.00060475	-3.5061E-07	-1.5501	-0.00089872	-1.5507	-0.00089907	579.7698492756024	47.886	0.95913	47.886	47.567	48.526	0					29	18	3	0	0	0	0.62155	1	16887	16887		19.257	5.3509	1	4676100	+		11765	18865	8396	8467	11497	11497					-0.04502251944722957
EMHEKGAYGF	10	Unmodified	_EMHEKGAYGF_					0	0	0			REV__ENSG00000116171|ENST00000371514|SCP2	REV__ENSG00000116171|ENST00000371514|SCP2	MULTI-MSMS	A375_MHC_IP_R1	1	585.1580200195312	2	584.758223	1167.50189	-0.00032395	-1.8943E-07	-0.070694	-4.1339E-05	-0.071018	-4.1528E-05	584.7581625312442	70.138	0.5593	70.138	69.832	70.392	0					22	10	4	0	0	0	0.27246	1	25454	25454		41.84	3.8656	1	3909600	+		11766	17944	8397	8468	11498	11498					-0.07515681676500208
EMILHRNP	8	Unmodified	_EMILHRNP_					0	0	0		ENSG00000007202|ENST00000528896|BLTP2	ENSG00000007202|ENST00000528896|BLTP2	ENSG00000007202|ENST00000528896|BLTP2	MSMS	A375_MHC_IP_R2	2	505.2554016113281	2	505.266019	1008.51748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.5	1	138.59	138.09	139.09	0.083969								0	0	0	0.16876	1	54309	54309		2.5775	0.27475	1				11767	937	8398	8469	11499	11499					0.013566496312023446
EMILLMSLKL	10	Unmodified	_EMILLMSLKL_					0	0	0			REV__ENST00000405333.5_1_2:10584278-10584637:-|nuORF	REV__ENST00000405333.5_1_2:10584278-10584637:-|nuORF	MSMS	A375_MHC_IP_R1	1	595.8837280273438	2	595.847996	1189.68144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.291	1	99.291	98.791	99.791	0								0	0	0	0.15531	1	36474	36474		3.5965	0.8613	1		+		11768	24433	8399	8470	11500	11500					0.09418486287086125
EMKKKQKRYVY	11	Unmodified	_EMKKKQKRYVY_					0	0	0			REV__ENSG00000154122|ENST00000284268|ANKH	REV__ENSG00000154122|ENST00000284268|ANKH	MULTI-SECPEP	A375_MHC_IP_R1	1	501.205322265625	3	500.950028	1499.82825	-0.45698	-0.00022892	2.6308	0.0013179	2.1739	0.001089	500.9512667444143	58.659	0.30496	58.659	58.481	58.786	0					9	5	2	0	0	0	0.99883	1	21108	21108		4.7159	2.0847	1	662660	+		11769	19864	8400	8471	11501	11501					0.09833299496403924
EMKTPATIQM	10	Unmodified	_EMKTPATIQM_					0	0	0		ENST00000380588.4_1_21:41163939-41173276:+|nuORF	ENST00000380588.4_1_21:41163939-41173276:+|nuORF	ENST00000380588.4_1_21:41163939-41173276:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	384.5933532714844	3	383.859598	1148.55697	-0.40407	-0.00015511	0.52555	0.00020174	0.12148	4.663E-05	384.1937166995559	23.519	0.60854	24.149	23.928	24.537	0.63014					27	11	4	0	0	0	0.73104	1	7589	7589		21.799	1.2185	1	32942000			11770	11352	8401	8472	11502	11502					-0.011370112002396127
EMLDPCLSY	9	Unmodified	_EMLDPCLSY_					0	0	0			REV__ENSG00000130935|ENST00000253247|NOL11	REV__ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	A375_MHC_IP_R2	2	535.6868896484375	2	535.730286	1069.44602	-0.9467	-0.00050718	-0.034793	-1.864E-05	-0.9815	-0.00052582	535.7301213616635	66.629	1.017	67.366	67.035	68.052	0.73631					52	19	4	0	0	0	0.32899	1	25232	25232		28.487	28.487	1	12881000	+		11771	18572	8402	8473	11503	11503					-0.08592650908326505
EMLSTSYSN	9	Unmodified	_EMLSTSYSN_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-2|FAT4	REV__nc|ENSG00000196159|Q6V0I7-2|FAT4	MSMS	A375_MHC_IP_R1	1	516.1736450195312	2	516.221139	1030.42773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.604	1	70.604	70.104	71.104	0								0	0	0	0.15486	1	25638	25638		10.824	2.9138	1		+		11772	22165	8403	8474	11504	11504					-0.08627069558701805
EMLSTSYSN	9	Unmodified	_EMLSTSYSN_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-2|FAT4	REV__nc|ENSG00000196159|Q6V0I7-2|FAT4	MSMS	A375_MHC_IP_R2	2	516.1741943359375	2	516.221139	1030.42773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.737	1	70.471	69.971	70.971	0.73421								0	0	0	0.15486	1	26431	26431		10.824	2.9138	1		+		11773	22165	8403	8474	11505	11505					-0.08627069558701805
EMMFWREYKQ	10	Unmodified	_EMMFWREYKQ_					0	0	0		ENST00000373930.3_1_9:123365690-123365822:-|nuORF	ENST00000373930.3_1_9:123365690-123365822:-|nuORF	ENST00000373930.3_1_9:123365690-123365822:-|nuORF	MSMS	A375_MHC_IP_R2	2	724.7261962890625	2	724.32849	1446.64243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.19	1	142.22	141.72	142.72	0.030731								0	0	0	0.15591	1	55590	55590		1.6526	0.45928	1				11774	11242	8404	8475	11506	11506					-0.06302846014591523
EMMMMAVF	8	Unmodified	_EMMMMAVF_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MULTI-MSMS	A375_MHC_IP_R2	2	495.60162353515625	2	495.201795	988.389038	-0.64173	-0.00031778	0.66496	0.00032929	0.023229	1.1503E-05	495.20205998198753	48.971	1.2182	49.729	49.282	50.5	0.75737					41	23	3	0	0	0	0.77603	1	18398	18398		9.3474	0.75416	1	2651600	+		11775	19731	8405	8476	11507	11507					-0.1056211299004417
EMMPNYCGL	9	Unmodified	_EMMPNYCGL_					0	0	0			REV__nc|ENSG00000012124|P20273-2|CD22	REV__nc|ENSG00000012124|P20273-2|CD22	MULTI-MSMS	A375_MHC_IP_R1	1	529.1807250976562	2	529.211206	1056.40786	-0.42306	-0.00022389	1.0696	0.00056602	0.6465	0.00034214	529.2122540776816	88.812	0.66032	88.812	88.51	89.171	0					19	12	2	0	0	0	0.68216	1	32734	32734		8.5933	0.68312	1	1835000	+		11776	16219	8406	8477	11508	11508					-0.11808860094652118
EMPHYSTF	8	Unmodified	_EMPHYSTF_					0	0	0		nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000106278|P23471-3|PTPRZ1;PTPRZ1|p.N1301Tfs*23|1|0.25|ENSG00000106278|chr7:122012947-122012947|A/-|frameshift_variant	nc|ENSG00000106278|P23471-2|PTPRZ1	nc|ENSG00000106278|P23471-2|PTPRZ1	MSMS	A375_MHC_IP_R2	2	506.1845397949219	2	506.21566	1010.41677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.223	1	50.977	50.477	51.477	0.75406								0	0	0	0.16876	1	18887	18887		9.3474	0	1				11777	2679	8407	8478	11509	11509					-0.08802427142313718
EMPMLVPLFGG	11	Unmodified	_EMPMLVPLFGG_					0	0	0			REV__ENST00000371241.5_1_10:97170518-97192246:-|nuORF	REV__ENST00000371241.5_1_10:97170518-97192246:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	596.15478515625	2	595.801045	1189.58754	-0.48307	-0.00028782	0.41037	0.0002445	-0.072702	-4.3316E-05	595.8015235362604	64.318	0.30641	65.058	64.85	65.157	0.74022					8	5	2	0	0	0	0.98748	1	24369	24369		8.7454	2.5396	1	728140	+		11778	23470	8408	8479	11510	11510					0.00032767184779913805
EMPMLVPLFGG	11	Unmodified	_EMPMLVPLFGG_					0	0	0			REV__ENST00000371241.5_1_10:97170518-97192246:-|nuORF	REV__ENST00000371241.5_1_10:97170518-97192246:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	595.801045	1189.58754	-0.49203	-0.00029315	0.87235	0.00051975	0.38032	0.00022659	595.8012720278911	65.181	0.35609	65.181	65.055	65.411	0	0.061562	0.00030194	NaN	8.7454	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1055600	+		11779	23470	8408	8479							0.00032767184779913805
EMRWVDHEIWV	11	Unmodified	_EMRWVDHEIWV_					0	0	0			REV__STEAP1|p.A207V|1|0.26|ENSG00000164647|chr7:90161936-90161936|C/T|missense_variant	REV__STEAP1|p.A207V|1|0.26|ENSG00000164647|chr7:90161936-90161936|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	500.47503662109375	3	500.57485	1498.70272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.361	1	98.117	97.617	98.617	0.75586								0	0	0	0.16302	1	36954	36954		1.2148	0	1		+		11780	28057	8409	8480	11511	11511					-0.026684123598442966
EMRWVSFAY	9	Unmodified	_EMRWVSFAY_					0	0	0			REV__TWIST1|p.S184G|1|0.28|ENSG00000122691|chr7:19116772-19116772|T/C|missense_variant	REV__TWIST1|p.S184G|1|0.28|ENSG00000122691|chr7:19116772-19116772|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	595.1788940429688	2	594.778959	1187.54336	-0.46647	-0.00027745	-0.040689	-2.4201E-05	-0.50716	-0.00030165	594.7787958151007	79.095	0.7614	79.84	79.438	80.199	0.74474					21	14	2	0	0	0	0.50702	1	30069	30069		32.305	3.8186	1	3144600	+		11781	18216	8410	8481	11512	11512					-0.04290500917159079
EMRWVSFAY	9	Unmodified	_EMRWVSFAY_					0	0	0			REV__TWIST1|p.S184G|1|0.28|ENSG00000122691|chr7:19116772-19116772|T/C|missense_variant	REV__TWIST1|p.S184G|1|0.28|ENSG00000122691|chr7:19116772-19116772|T/C|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	594.778959	1187.54336	-0.37827	-0.00022499	0.57884	0.00034428	0.20057	0.0001193	594.7793734168897	79.727	0.719	79.727	79.367	80.086	0	-0.05671	0.00020067	NaN	32.305	29	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5120700	+		11782	18216	8410	8481							-0.04290500917159079
EMRWWHEWRRH	11	Unmodified	_EMRWWHEWRRH_					0	0	0			REV__ENST00000398117.1_1_18:60791148-60791340:-|nuORF	REV__ENST00000398117.1_1_18:60791148-60791340:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	571.0073852539062	3	570.272387	1707.79533	-0.41965	-0.00023931	1.3891	0.00079217	0.96946	0.00055285	570.2728544105487	65.492	0.61377	65.492	65.257	65.871	0					23	11	3	0	0	0	0.73906	1	23718	23718		0.073264	0.073264	1	3725900	+		11783	24372	8411	8482	11513	11513					-0.030254697830969235
EMRWWHEWRRH	11	Unmodified	_EMRWWHEWRRH_					0	0	0			REV__ENST00000398117.1_1_18:60791148-60791340:-|nuORF	REV__ENST00000398117.1_1_18:60791148-60791340:-|nuORF	MSMS	A375_MHC_IP_R1	1	854.9049682617188	2	854.904942	1707.79533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.88	1	144.88	144.38	145.38	0								0	0	0	0.1636	1	55550	55550		0	0	1		+		11784	24372	8411	8482	11514	11514					-0.030254697830969235
EMSAVVPDG	9	Unmodified	_EMSAVVPDG_					0	0	0		ENSG00000104884|ENST00000391945|ERCC2;ENST00000588652.5_1_19:45854889-45860860:-|nuORF;ENST00000391942.6_1_19:45854889-45865127:-|nuORF	ENSG00000104884|ENST00000391945|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	MSMS	A375_MHC_IP_R1	1	452.6424255371094	2	452.707668	903.400783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.72	1	36.72	36.22	37.22	0								0	0	0	0.14359	1	12314	12314		28.487	0	1				11785	2549	8412	8483	11515	11515					-0.054781333792107034
EMSQDKNLY	9	Unmodified	_EMSQDKNLY_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MSMS	A375_MHC_IP_R1	1	564.1749267578125	2	564.255514	1126.49647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.968	1	95.968	95.468	96.468	0								0	0	0	0.15486	1	35273	35273		10.824	0.75	1				11786	1628	8413	8484	11516	11516					-0.06171405258965024
EMSQDKNLY	9	Unmodified	_EMSQDKNLY_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MSMS	A375_MHC_IP_R2	2	564.17431640625	2	564.255514	1126.49647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.362	1	96.113	95.613	96.613	0.75045								0	0	0	0.1535	1	36227	36227		15.847	3.6065	1				11787	1628	8413	8484	11517	11517					-0.06171405258965024
EMVIRLWPSPR	11	Unmodified	_EMVIRLWPSPR_					0	0	0		ENST00000545218.5_1_12:121756099-121775126:-|nuORF	ENST00000545218.5_1_12:121756099-121775126:-|nuORF	ENST00000545218.5_1_12:121756099-121775126:-|nuORF	MSMS	A375_MHC_IP_R2	2	692.3902587890625	2	692.381914	1382.74928	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.013	1	92.753	92.253	93.253	0.73902								0	0	0	0.16285	1	34995	34995		3.8763	0.88109	1				11788	13321	8414	8485	11518	11518					0.07321072262084272
EMVKSTTSLT	10	Unmodified	_EMVKSTTSLT_					0	0	0		nc|ENSG00000076242|P40692-2|MLH1;nc|ENSG00000076242|P40692-3|MLH1;ENSG00000076242|ENST00000231790|MLH1;MLH1|p.S368L|1|0.39|ENSG00000076242|chr3:37025701-37025701|C/T|missense_variant;MLH1|p.S486Nfs*6|1|0.32|ENSG00000076242|chr3:37028829-37028830|-/AA|frameshift_variant;MLH1|p.R487Kfs*15|1|0.32|ENSG00000076242|chr3:37028831-37028832|CC/-|frameshift_variant;MLH1|p.R522Gfs*13|1|0.19|ENSG00000076242|chr3:37040190-37040190|C/-|frameshift_variant	nc|ENSG00000076242|P40692-2|MLH1	nc|ENSG00000076242|P40692-2|MLH1	MSMS	A375_MHC_IP_R2	2	366.09808349609375	3	366.190002	1095.54818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.182	1	70.916	70.416	71.416	0.73421								0	0	0	0.15435	1	26604	26604		3.5871	0.30575	1				11789	1632	8415	8486	11519	11519					0.004223384349415937
EMYVYRLT	8	Unmodified	_EMYVYRLT_					0	0	0			REV__ENST00000605901.1_1_6:2988904-2989938:+|nuORF	REV__ENST00000605901.1_1_6:2988904-2989938:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	359.24761962890625	3	358.847799	1073.52157	-0.1779	-6.3841E-05	-0.025222	-9.0507E-06	-0.20313	-7.2892E-05	358.8477363319859	27.236	0.56064	27.914	27.69	28.251	0.67857					20	10	3	0	0	0	0.97021	1	9294	9294		12.241	8.921	1	4994300	+		11790	26536	8416	8487	11520	11520					-0.01225305665752785
ENAAPDFYY	9	Unmodified	_ENAAPDFYY_					0	0	0		nc|ENSG00000183569|Q9H4I8-2|SERHL2	nc|ENSG00000183569|Q9H4I8-2|SERHL2	nc|ENSG00000183569|Q9H4I8-2|SERHL2	MSMS	A375_MHC_IP_R1	1	545.2117919921875	2	545.229822	1088.44509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.761	1	84.761	84.261	85.261	0								0	0	0	0.15486	1	31054	31054		12.532	0	1				11791	14808	8417	8488	11521	11521					-0.09559405961363154
ENAHPYRNS	9	Unmodified	_ENAHPYRNS_					0	0	0		SAMSN1|p.G98E|1|0.28|ENSG00000155307|chr21:14512560-14512560|C/T|missense_variant;ENSG00000155307|ENST00000400566|SAMSN1;nc|ENSG00000155307|Q9NSI8-3|SAMSN1	SAMSN1|p.G98E|1|0.28|ENSG00000155307|chr21:14512560-14512560|C/T|missense_variant	SAMSN1|p.G98E|1|0.28|ENSG00000155307|chr21:14512560-14512560|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	543.7005615234375	2	544.249412	1086.48427	-0.57339	-0.00031207	0.67151	0.00036547	0.098119	5.3401E-05	544.7512317110788	40.795	0.55486	40.795	40.559	41.114	0					18	10	3	0	0	0	0.73363	1	14004	14004		3.5965	1.7523	1	2460200			11792	6136	8418	8489	11522	11522					-0.055512608871367775
ENAIPPTF	8	Unmodified	_ENAIPPTF_					0	0	0		ENSG00000092969|ENST00000366930|TGFB2	ENSG00000092969|ENST00000366930|TGFB2	ENSG00000092969|ENST00000366930|TGFB2	MSMS	A375_MHC_IP_R1	1	444.6507263183594	2	444.726718	887.438883	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.039	1	35.039	34.539	35.539	0								0	0	0	0.16876	1	11616	11616		16.942	0	1				11793	2018	8419	8490	11523	11523					-0.009338794022482944
ENAKKVKK	8	Unmodified	_ENAKKVKK_					0	0	0			REV__tr|U7SV52|U7SV52_FUSNUGlucose-1-phosphateadenylyltransferase,GlgDsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01132PE=3SV=1	REV__tr|U7SV52|U7SV52_FUSNUGlucose-1-phosphateadenylyltransferase,GlgDsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01132PE=3SV=1	MSMS	A375_MHC_IP_R2	2	472.9302978515625	2	472.798009	943.581465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.214	1	76.954	76.454	77.454	0.74052								0	0	0	0.16876	1	28933	28933		15.847	1.2655	1		+		11794	28584	8420	8491	11524	11524					0.10741753059812709
ENAMRVKQQKF	11	Unmodified	_ENAMRVKQQKF_					0	0	0			REV__ENST00000368660.1_1_1:153751554-153752475:+|nuORF	REV__ENST00000368660.1_1_1:153751554-153752475:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	460.6199951171875	3	460.246844	1377.7187	-0.45345	-0.0002087	4.3521	0.002003	3.8986	0.0017943	460.2494315944327	36.495	0.45872	36.495	36.133	36.592	0					11	8	2	0	0	0	0.73502	1	12183	12183		4.1166	0	1	1233900	+		11795	19368	8421	8492	11525	11525					0.0449529387703933
ENAMRVKQQKF	11	Unmodified	_ENAMRVKQQKF_					0	0	0			REV__ENST00000368660.1_1_1:153751554-153752475:+|nuORF	REV__ENST00000368660.1_1_1:153751554-153752475:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	460.246844	1377.7187	-0.61081	-0.00028112	4.7471	0.0021848	4.1363	0.0019037	460.58330142178096	35.647	0.45563	36.41	36.183	36.638	0.76338	-0.042239	7.5677E-05	NaN	4.1166	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1673400	+		11796	19368	8421	8492							0.0449529387703933
ENANGRHSI	9	Unmodified	_ENANGRHSI_					0	0	0			REV__nc|ENSG00000205838|Q6PF05-3|TTC23L	REV__nc|ENSG00000205838|Q6PF05-3|TTC23L	MULTI-SECPEP	A375_MHC_IP_R2	2	498.66314697265625	2	499.244129	996.473705	-0.56253	-0.00028084	0.17353	8.6635E-05	-0.389	-0.00019421	499.24419063396164	80.424	0.40512	81.169	80.86	81.265	0.74473					11	7	2	0	0	0	0.63327	1	30418	30418		18.146	18.146	1	746060	+		11797	27462	8422	8493	11526	11526					-0.024672435415823202
ENANGRHSI	9	Unmodified	_ENANGRHSI_					0	0	0			REV__nc|ENSG00000205838|Q6PF05-3|TTC23L	REV__nc|ENSG00000205838|Q6PF05-3|TTC23L	MULTI-MATCH	A375_MHC_IP_R1	1		2	499.244129	996.473705	-0.45139	-0.00022535	-0.030875	-1.5414E-05	-0.48226	-0.00024077	499.2440684172784	81.174	0.40655	81.174	80.897	81.303	0	0.0021639	-0.00010705	NaN	18.146	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1283800	+		11798	27462	8422	8493							-0.024672435415823202
ENCCFDTSLEY	11	Unmodified	_ENCCFDTSLEY_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD;FOCAD|p.K1247Gfs*36|1|0.38|ENSG00000188352|chr9:20948333-20948346|AAAAGCTGAAGACT/-|frameshift_variant	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MSMS	A375_MHC_IP_R1	1	662.3026733398438	2	662.247028	1322.4795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.611	1	84.611	84.111	85.111	0								0	0	0	0.16249	1	30997	30997		5.7319	0.83484	1				11799	8904	8423	8494	11527	11527					-0.1688369392709319
ENCFNGECCCF	11	Unmodified	_ENCFNGECCCF_					0	0	0			REV__ENSG00000114739|ENST00000352511|ACVR2B	REV__ENSG00000114739|ENST00000352511|ACVR2B	MULTI-SECPEP	A375_MHC_IP_R1	1	635.3120727539062	2	634.695594	1267.37664	-0.51755	-0.00032849	1.9187	0.0012178	1.4011	0.00088928	634.6954181609242	93.255	0.20467	93.255	93.125	93.329	0					5	3	2	0	0	0	1.001	1	34254	34254		1.1933	1.1933	1	561310	+		11800	17839	8424	8495	11528	11528					-0.24635801191061546
ENCMYNHW	8	Unmodified	_ENCMYNHW_					0	0	0			REV__ENSG00000077080|ENST00000160382|ACTL6B	REV__ENSG00000077080|ENST00000160382|ACTL6B	MSMS	A375_MHC_IP_R1	1	548.669921875	2	548.702394	1095.39024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.536	1	33.536	33.036	34.036	0								0	0	0	0.16876	1	10958	10958		9.3474	1.4373	1		+		11801	16687	8425	8496	11529	11529					-0.15364439305290034
ENDIKSYF	8	Unmodified	_ENDIKSYF_					0	0	0		ENSG00000168496|ENST00000305885|FEN1;ENST00000401028.2_1_1:91793937-91794252:+|nuORF	ENSG00000168496|ENST00000305885|FEN1	ENSG00000168496|ENST00000305885|FEN1	MULTI-MSMS	A375_MHC_IP_R1	1	508.63995361328125	2	508.24019	1014.46583	-0.44364	-0.00022547	-0.15782	-8.0211E-05	-0.60146	-0.00030569	508.2400824058764	61.05	0.71277	61.05	60.77	61.483	0					20	13	2	0	0	0	0.77523	2	22009	22009;22025		12.241	2.8932	1	2934800			11802	7311	8426	8497	11530;11531	11530					-0.0408281558170529
ENDIKSYF	8	Unmodified	_ENDIKSYF_					0	0	0		ENSG00000168496|ENST00000305885|FEN1;ENST00000401028.2_1_1:91793937-91794252:+|nuORF	ENSG00000168496|ENST00000305885|FEN1	ENSG00000168496|ENST00000305885|FEN1	MULTI-MSMS	A375_MHC_IP_R2	2	508.6813049316406	2	508.24019	1014.46583	-1.0522	-0.00053477	0.093505	4.7523E-05	-0.9587	-0.00048725	508.2402064491462	60.26	0.56269	61.005	60.751	61.314	0.74503					23	10	3	0	0	0	0.76184	1	22818	22818		17.113	5.4726	1	2794100			11803	7311	8426	8497	11532	11532					-0.0408281558170529
ENDNATDRW	9	Unmodified	_ENDNATDRW_					0	0	0			REV__nc|ENSG00000181191|Q8NG27-2|PJA1	REV__nc|ENSG00000181191|Q8NG27-2|PJA1	MULTI-MSMS	A375_MHC_IP_R1	1	561.1851806640625	2	560.736334	1119.45811	-0.63807	-0.00035779	-1.3716	-0.0007691	-2.0097	-0.0011269	560.735111281014	66.038	0.30411	66.038	65.768	66.072	0					6	5	2	0	0	0	0.38603	1	23888	23888		25.399	2.2509	1	1018600	+		11804	21640	8427	8498	11533	11533					-0.09683574849304932
ENDPLCVPL	9	Unmodified	_ENDPLCVPL_					0	0	0			REV__ENST00000544702.5_1_12:7248989-7252531:-|nuORF	REV__ENST00000544702.5_1_12:7248989-7252531:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	499.4602355957031	2	500.244418	998.474282	-0.33269	-0.00016642	2.2088	0.001105	1.8762	0.00093854	500.24565788197697	50.89	1.0657	50.89	50.459	51.525	0					34	20	3	0	0	0	0.69504	1	17925	17925		7.9102	0	1	3810800	+		11805	19138	8428	8499	11534	11534					-0.02501584936726431
ENDRWRFYWK	10	Unmodified	_ENDRWRFYWK_					0	0	0		ENSG00000206579|ENST00000327381|XKR4	ENSG00000206579|ENST00000327381|XKR4	ENSG00000206579|ENST00000327381|XKR4	MSMS	A375_MHC_IP_R1	1	500.47479248046875	3	500.57747	1498.71058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.302	1	89.302	88.802	89.802	0								0	0	0	0.15531	1	32803	32803		1.7423	0.52744	1				11806	9547	8429	8500	11535	11535					-0.018825170480567976
ENDRWRFYWK	10	Unmodified	_ENDRWRFYWK_					0	0	0		ENSG00000206579|ENST00000327381|XKR4	ENSG00000206579|ENST00000327381|XKR4	ENSG00000206579|ENST00000327381|XKR4	MSMS	A375_MHC_IP_R2	2	500.4748229980469	3	500.57747	1498.71058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.682	1	89.414	88.914	89.914	0.7318								0	0	0	0.15541	1	33748	33748		1.5923	0.37745	1				11807	9547	8429	8500	11536	11536					-0.018825170480567976
ENDRWRFYWK	10	Unmodified	_ENDRWRFYWK_					0	0	0		ENSG00000206579|ENST00000327381|XKR4	ENSG00000206579|ENST00000327381|XKR4	ENSG00000206579|ENST00000327381|XKR4	MSMS	A375_MHC_IP_R2	2	500.4751281738281	3	500.57747	1498.71058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.787	1	90.519	90.019	91.019	0.7318								0	0	0	0.15596	1	34166	34166		0.62683	0.17231	1				11808	9547	8429	8500	11537	11537					-0.018825170480567976
ENDTGESMLWK	11	Unmodified	_ENDTGESMLWK_					0	0	0		ENSG00000125772|ENST00000379019|GPCPD1	ENSG00000125772|ENST00000379019|GPCPD1	ENSG00000125772|ENST00000379019|GPCPD1	MULTI-SECPEP	A375_MHC_IP_R1	1	655.4004516601562	2	655.290085	1308.56562	-0.65433	-0.00042877	-0.12966	-8.4966E-05	-0.78399	-0.00051374	655.2904671876395	66.628	0.56091	66.628	66.377	66.938	0					14	10	2	0	0	0	0.78118	1	24084	24084		20.415	0	1	1570600			11809	3987	8430	8501	11538	11538					-0.07632366030088633
ENDTNVIKP	9	Unmodified	_ENDTNVIKP_					0	0	0			REV__ENSG00000236287|ENST00000413761|ZBED5	REV__ENSG00000236287|ENST00000413761|ZBED5	MULTI-MSMS	A375_MHC_IP_R1	1	515.232177734375	2	515.264196	1028.51384	-0.56213	-0.00028965	0.71695	0.00036942	0.15481	7.977E-05	515.2647709940799	59.067	1.9823	59.067	58.075	60.057	0					70	38	3	0	0	0	0.6656	1	21376	21376		10.074	0.6908	1	11324000	+		11810	22758	8431	8502	11539	11539					0.0007225833833217621
ENDYKDHKY	9	Unmodified	_ENDYKDHKY_					0	0	0		nc|ENSG00000112200|Q9Y4E5-4|ZNF451	nc|ENSG00000112200|Q9Y4E5-4|ZNF451	nc|ENSG00000112200|Q9Y4E5-4|ZNF451	MULTI-SECPEP	A375_MHC_IP_R2	2	605.7239990234375	2	606.27001	1210.52547	-0.9807	-0.00059457	0.37582	0.00022785	-0.60488	-0.00036672	606.2698940322889	53.168	0.91451	53.919	53.335	54.249	0.75105					29	17	2	0	0	0	0.76187	1	19956	19956		1.6526	0.17072	1	3095500			11811	14548	8432	8503	11540	11540					-0.07137544638339932
ENEAFLDGGH	10	Unmodified	_ENEAFLDGGH_					0	0	0			REV__ENSG00000001629|ENST00000265742|ANKIB1	REV__ENSG00000001629|ENST00000265742|ANKIB1	MULTI-MSMS	A375_MHC_IP_R2	2	544.6759643554688	2	544.735803	1087.45705	-0.75713	-0.00041243	0.33744	0.00018382	-0.41969	-0.00022862	544.7361643338643	46.015	0.70517	46.78	46.303	47.008	0.76519					15	13	2	0	0	0	0.70651	1	17051	17051		9.3831	9.3831	1	2271300	+		11812	16085	8433	8504	11541	11541					-0.08317789218176586
ENECKAYMFVF	11	Unmodified	_ENECKAYMFVF_					0	0	0			REV__ENSG00000173930|ENST00000310954|SLCO4C1	REV__ENSG00000173930|ENST00000310954|SLCO4C1	MULTI-SECPEP	A375_MHC_IP_R1	1	691.2000122070312	2	690.801774	1379.58899	-0.54702	-0.00037788	-2.3723	-0.0016388	-2.9193	-0.0020167	690.7997621172221	79.378	0.30873	79.378	79.265	79.574	0					6	5	2	0	0	0	0.99227	1	29018	29018		9.3831	3.6513	1	888930	+		11813	21255	8434	8505	11542	11542					-0.0856164351712323
ENEDLAGAVGG	11	Unmodified	_ENEDLAGAVGG_					0	0	0		HEXIM2|p.D55N|1|0.39|ENSG00000168517|chr17:45169111-45169111|G/A|missense_variant	HEXIM2|p.D55N|1|0.39|ENSG00000168517|chr17:45169111-45169111|G/A|missense_variant	HEXIM2|p.D55N|1|0.39|ENSG00000168517|chr17:45169111-45169111|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	516.160888671875	2	516.235635	1030.45672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.456	1	61.201	60.701	61.701	0.74503								0	0	0	0.096852	1	22892	22892		36.506	8.0194	1				11814	14119	8435	8506	11543	11543					-0.057292089380325706
ENEERGTLYA	10	Unmodified	_ENEERGTLYA_					0	0	0		EBLN2|p.P163L|1|0.38|ENSG00000255423|chr3:73062569-73062569|C/T|missense_variant	EBLN2|p.P163L|1|0.38|ENSG00000255423|chr3:73062569-73062569|C/T|missense_variant	EBLN2|p.P163L|1|0.38|ENSG00000255423|chr3:73062569-73062569|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	591.1157836914062	2	591.275292	1180.53603	-0.33957	-0.00020078	-0.13789	-8.1534E-05	-0.47746	-0.00028231	591.2758473794993	83.231	0.86237	83.231	83.024	83.887	0					21	16	2	0	0	0	0.90513	1	30568	30568		17.113	11.381	1	1642200			11815	817	8436	8507	11544	11544					-0.04701561983870306
ENEGKWEVP	9	Unmodified	_ENEGKWEVP_					0	0	0		ENST00000511141.1_1_4:153717542-153717788:-|nuORF	ENST00000511141.1_1_4:153717542-153717788:-|nuORF	ENST00000511141.1_1_4:153717542-153717788:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	544.4970092773438	2	544.256371	1086.49819	-0.95133	-0.00051777	-3.4554	-0.0018806	-4.4067	-0.0023984	544.7548470438966	97.504	0.35492	98.26	98.128	98.483	0.75587					11	6	3	0	0	0	0.76827	1	36985	36985		3.5965	2.1146	1	843740			11816	12905	8437	8508	11545	11545					-0.04160028178716857
ENEIHYLQENL	11	Unmodified	_ENEIHYLQENL_					0	0	0		nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;ENST00000373851.6_1_9:123874787-123912836:+|nuORF;nc|ENSG00000119397|Q7Z7A1-2|CNTRL	nc|ENSG00000119397|Q7Z7A1-5|CNTRL	nc|ENSG00000119397|Q7Z7A1-5|CNTRL	MULTI-MSMS	A375_MHC_IP_R1	1	468.2921142578125	3	467.893013	1400.65721	-0.27602	-0.00012915	-0.51698	-0.00024189	-0.79299	-0.00037104	467.89273266067147	73.184	0.55665	73.184	72.88	73.437	0					28	10	4	0	0	0	0.65374	1	26615	26615		19.144	4.306	1	4416200			11817	3588	8438	8509	11546	11546					-0.027093593412246264
ENEIHYLQENL	11	Unmodified	_ENEIHYLQENL_					0	0	0		nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;ENST00000373851.6_1_9:123874787-123912836:+|nuORF;nc|ENSG00000119397|Q7Z7A1-2|CNTRL	nc|ENSG00000119397|Q7Z7A1-5|CNTRL	nc|ENSG00000119397|Q7Z7A1-5|CNTRL	MULTI-MSMS	A375_MHC_IP_R2	2	468.6272888183594	3	467.893013	1400.65721	-0.76285	-0.00035693	0.025273	1.1825E-05	-0.73758	-0.00034511	467.8929920914866	72.55	0.60758	73.285	72.872	73.48	0.7354					27	11	3	0	0	0	0.70919	1	27485	27485		14.838	3.7726	1	5005400			11818	3588	8438	8509	11547	11547					-0.027093593412246264
ENEILIDALY	10	Unmodified	_ENEILIDALY_					0	0	0			REV__tr|U7STT2|U7STT2_FUSNUN-acyl-D-amino-aciddeacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01560PE=4SV=1	REV__tr|U7STT2|U7STT2_FUSNUN-acyl-D-amino-aciddeacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01560PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	597.2079467773438	2	596.808436	1191.60232	-0.49091	-0.00029298	0.0078137	4.6633E-06	-0.4831	-0.00028832	596.8083088623563	88.754	0.75786	89.486	89.128	89.886	0.7318					38	14	4	0	0	0	0.88918	1	33740	33740		13.042	0.80181	1	8940100	+		11819	28503	8439	8510	11548	11548					0.014182538581508197
ENELPVPHTS	10	Unmodified	_ENELPVPHTS_					0	0	0		ENSG00000134686|ENST00000683057|PHC2;nc|ENSG00000134686|Q8IXK0-4|PHC2;nc|ENSG00000134686|Q8IXK0|PHC2	ENSG00000134686|ENST00000683057|PHC2	ENSG00000134686|ENST00000683057|PHC2	MULTI-MSMS	A375_MHC_IP_R2	2	562.2107543945312	2	561.774928	1121.5353	-0.46865	-0.00026328	0.042432	2.3837E-05	-0.42622	-0.00023944	561.7752331302908	43.191	0.45587	43.963	43.674	44.13	0.7724					17	8	3	0	0	0	0.62015	1	15986	15986		19.362	2.249	1	3910000			11820	4595	8440	8511	11549	11549					-0.020603566329327805
ENELTVIY	8	Unmodified	_ENELTVIY_					0	0	0		L1M1_dup4527|chr9:5910919-5911522:-|25.664826814240037|0.1786031907917184|7.17|472.0|25|1|anti-sense	L1M1_dup4527|chr9:5910919-5911522:-|25.664826814240037|0.1786031907917184|7.17|472.0|25|1|anti-sense	L1M1_dup4527|chr9:5910919-5911522:-|25.664826814240037|0.1786031907917184|7.17|472.0|25|1|anti-sense	MULTI-MSMS	A375_MHC_IP_R1	1	491.14984130859375	2	490.75039	979.486227	-0.3975	-0.00019507	-0.011211	-5.5018E-06	-0.40871	-0.00020057	490.75031035471306	76.854	1.1677	76.854	76.471	77.639	0					58	22	4	0	0	0	0.15393	1	27947	27947		85.272	0	1	37634000			11821	14246	8441	8512	11550	11550					-0.004336449219181304
ENENGDAI	8	Unmodified	_ENENGDAI_					0	0	0			REV__tr|U7SWJ5|U7SWJ5_FUSNUUniversalbacterialproteinYeaZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01066PE=4SV=1	REV__tr|U7SWJ5|U7SWJ5_FUSNUUniversalbacterialproteinYeaZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01066PE=4SV=1	MSMS	A375_MHC_IP_R2	2	431.1528625488281	2	431.182872	860.35119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.402	1	69.137	68.637	69.637	0.73511								0	0	0	0.16876	1	25921	25921		2.8892	0	1		+		11822	28604	8442	8513	11551	11551					-0.08457125063671356
ENENKTKV	8	Unmodified	_ENENKTKV_					0	0	0		nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-SECPEP	A375_MHC_IP_R2	2	480.47186279296875	2	481.251089	960.487624	-0.80548	-0.00038764	-0.061614	-2.9652E-05	-0.8671	-0.00041729	481.25114882226814	35.406	0.40392	36.17	35.929	36.333	0.76338					10	7	2	0	0	0	0.97144	1	12820	12820		2.3027	0	1	1213000			11823	5841	8443	8514	11552	11552					0.005799891668516466
ENENKTKV	8	Unmodified	_ENENKTKV_					0	0	0		nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-MATCH	A375_MHC_IP_R1	1		2	481.251089	960.487624	-0.4717	-0.00022701	0.18769	9.0327E-05	-0.28401	-0.00013668	481.251185316467	36.244	0.30521	36.244	36.133	36.439	0	0.037381	8.519E-05	NaN	2.3027	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	923240			11824	5841	8443	8514							0.005799891668516466
ENEQLQSQL	9	Unmodified	_ENEQLQSQL_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	A375_MHC_IP_R2	2	545.1643676757812	2	544.76456	1087.51457	-1.4572	-0.00079385	0.74048	0.00040339	-0.71676	-0.00039047	544.7648388222714	37.021	0.55761	37.792	37.513	38.07	0.7709					16	10	2	0	0	0	0.14572	1	13541	13541		53.833	0	1	3688000	+		11825	18428	8444	8515	11553	11553					-0.025689470126053493
ENERLLCFSP	10	Unmodified	_ENERLLCFSP_					0	0	0		nc|ENSG00000140326|Q8IWY9-1|CDAN1;ENSG00000140326|ENST00000356231|CDAN1	nc|ENSG00000140326|Q8IWY9-1|CDAN1	nc|ENSG00000140326|Q8IWY9-1|CDAN1	MULTI-SECPEP	A375_MHC_IP_R2	2	604.3858032226562	2	604.29243	1206.57031	-0.42552	-0.00025714	-4.335	-0.0026196	-4.7605	-0.0028767	604.2883717212583	42.03	0.56219	42.805	42.35	42.913	0.77451					17	10	2	0	0	0	0.91556	1	15532	15532		1.3295	0	1	1024600			11826	5144	8445	8516	11554	11554					-0.024714370966421484
ENESIKEAYNA	11	Unmodified	_ENESIKEAYNA_					0	0	0			REV__ITSN1|p.P805S|1|0.27|ENSG00000205726|chr21:33811068-33811068|C/T|missense_variant	REV__ITSN1|p.P805S|1|0.27|ENSG00000205726|chr21:33811068-33811068|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	633.6875	2	634.293682	1266.57281	-0.79509	-0.00050432	-1.4774	-0.0009371	-2.2725	-0.0014414	634.2928459252987	98.261	0.45801	99.021	98.793	99.251	0.75977					13	8	2	0	0	0	0.94168	1	37249	37249		15.248	0.8431	1	795000	+		11827	26811	8446	8517	11555	11555					-0.049813101579729846
ENESIQPY	8	Unmodified	_ENESIQPY_					0	0	0		NID2|p.G418E|1|0.29|ENSG00000087303|chr14:52053755-52053755|C/T|missense_variant	NID2|p.G418E|1|0.29|ENSG00000087303|chr14:52053755-52053755|C/T|missense_variant	NID2|p.G418E|1|0.29|ENSG00000087303|chr14:52053755-52053755|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	491.003173828125	2	490.221997	978.429441	-0.87611	-0.00042949	0.38574	0.0001891	-0.49037	-0.00024039	490.22207796847596	33.317	0.81213	34.069	33.737	34.55	0.75225					26	15	2	0	0	0	0.92636	1	11961	11961		11.64	4.9171	1	2375800			11828	14994	8447	8518	11556	11556					-0.060636924784148505
ENETNCYD	8	Unmodified	_ENETNCYD_					0	0	0			REV__ENST00000486458.1_1_2:74077502-74087672:+|nuORF	REV__ENST00000486458.1_1_2:74077502-74087672:+|nuORF	MSMS	A375_MHC_IP_R1	1	494.1506042480469	2	494.171647	986.32874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.748	1	80.748	80.248	81.248	0								0	0	0	0.16876	1	29500	29500		5.2307	0	1		+		11829	18297	8448	8519	11557	11557					-0.16497092523593437
ENEYQYQREKL	11	Unmodified	_ENEYQYQREKL_					0	0	0			REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	MSMS	A375_MHC_IP_R1	1	500.6661071777344	3	500.575684	1498.70522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.791	1	74.791	74.291	75.291	0								0	0	0	0.16179	1	27243	27243		4.7159	1.1289	1		+		11830	27163	8449	8520	11558	11558					-0.024182854212085658
ENEYQYQREKL	11	Unmodified	_ENEYQYQREKL_					0	0	0			REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	MSMS	A375_MHC_IP_R2	2	500.4748229980469	3	500.575684	1498.70522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.483	1	73.218	72.718	73.718	0.73541								0	0	0	0.16302	1	27506	27506		1.2148	0.10508	1		+		11831	27163	8449	8520	11559	11559					-0.024182854212085658
ENEYQYQREKL	11	Unmodified	_ENEYQYQREKL_					0	0	0			REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	MSMS	A375_MHC_IP_R2	2	500.4749450683594	3	500.575684	1498.70522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.093	1	73.829	73.329	74.329	0.73541								0	0	0	0.16302	1	27745	27745		1.2148	0	1		+		11832	27163	8449	8520	11560	11560					-0.024182854212085658
ENEYQYQREKL	11	Unmodified	_ENEYQYQREKL_					0	0	0			REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	MSMS	A375_MHC_IP_R2	2	500.666259765625	3	500.575684	1498.70522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.845	1	74.583	74.083	75.083	0.73752								0	0	0	0.16179	1	28030	28030		4.7159	1.3963	1		+		11833	27163	8449	8520	11561	11561					-0.024182854212085658
ENEYQYQREKL	11	Unmodified	_ENEYQYQREKL_					0	0	0			REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	MSMS	A375_MHC_IP_R2	2	500.4747009277344	3	500.575684	1498.70522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.309	1	75.046	74.546	75.546	0.73752								0	0	0	0.16302	1	28207	28207		1.2148	0.10508	1		+		11834	27163	8449	8520	11562	11562					-0.024182854212085658
ENEYQYQREKL	11	Unmodified	_ENEYQYQREKL_					0	0	0			REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	MSMS	A375_MHC_IP_R2	2	500.4749450683594	3	500.575684	1498.70522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.24	1	89.972	89.472	90.472	0.7318								0	0	0	0.16302	1	33962	33962		1.2148	0	1		+		11835	27163	8449	8520	11563	11563					-0.024182854212085658
ENFALLASL	9	Unmodified	_ENFALLASL_					0	0	0		ENST00000594803.1_1_19:58233776-58238980:-|nuORF;ENSG00000083814|ENST00000317398|ZNF671	ENST00000594803.1_1_19:58233776-58238980:-|nuORF	ENST00000594803.1_1_19:58233776-58238980:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	488.4693603515625	2	489.26875	976.522947	-0.2881	-0.00014096	-0.49886	-0.00024408	-0.78696	-0.00038504	489.2687656063531	61.625	0.30497	61.625	61.483	61.788	0					6	5	2	0	0	0	0.71541	1	22284	22284		3.9444	0	1	1068800			11836	1788	8450	8521	11564	11564					0.033746516946507654
ENFKKTFKRIL	11	Unmodified	_ENFKKTFKRIL_					0	0	0		ENSG00000196639|ENST00000431010|HRH1	ENSG00000196639|ENST00000431010|HRH1	ENSG00000196639|ENST00000431010|HRH1	MSMS	A375_MHC_IP_R2	2	712.4903564453125	2	712.424636	1422.83472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.54	1	26.194	25.694	26.694	0.65379								0	0	0	0.16352	1	8547	8547		1.1933	0.84271	1				11837	9066	8451	8522	11565	11565					0.1402156071940226
ENFNHKSL	8	Unmodified	_ENFNHKSL_					0	0	0		LMOD3|p.G64E|1|0.12|ENSG00000163380|chr3:69122196-69122196|C/T|missense_variant	LMOD3|p.G64E|1|0.12|ENSG00000163380|chr3:69122196-69122196|C/T|missense_variant	LMOD3|p.G64E|1|0.12|ENSG00000163380|chr3:69122196-69122196|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	494.6776428222656	2	494.745973	987.477394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.357	1	67.093	66.593	67.593	0.73631								0	0	0	0.16876	1	25144	25144		19.439	1.304	1				11838	14305	8452	8523	11566	11566					-0.016845737677158468
ENFPQKYVDP	10	Unmodified	_ENFPQKYVDP_					0	0	0		ENSG00000107890|ENST00000376087|ANKRD26	ENSG00000107890|ENST00000376087|ANKRD26	ENSG00000107890|ENST00000376087|ANKRD26	MSMS	A375_MHC_IP_R1	1	412.9350280761719	3	412.868027	1235.58225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.313	1	24.313	23.813	24.813	0								0	0	0	0.1524	1	6876	6876		7.9454	0	1				11839	2767	8453	8524	11567	11567					-0.026114970818071015
ENFYFRCQKLW	11	Unmodified	_ENFYFRCQKLW_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	A375_MHC_IP_R1	1	511.1401672363281	3	511.915095	1532.72345	-0.45859	-0.00023476	-0.9818	-0.0005026	-1.4404	-0.00073736	511.91387381766395	25.079	1.0165	25.079	24.698	25.714	0					25	19	2	0	0	0	1.0004	1	7286	7286		0.40827	0	1	14746000	+		11840	16332	8454	8525	11568	11568					-0.02159821980194465
ENGDFILSL	9	Unmodified	_ENGDFILSL_					0	0	0		tr|U7T3L4|U7T3L4_FUSNUPeptidyl-prolylcis-transisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00345PE=3SV=1	tr|U7T3L4|U7T3L4_FUSNUPeptidyl-prolylcis-transisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00345PE=3SV=1	tr|U7T3L4|U7T3L4_FUSNUPeptidyl-prolylcis-transisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00345PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	503.70611572265625	2	504.25584	1006.49713	-0.16798	-8.4706E-05	1.1341	0.00057187	0.96611	0.00048716	504.25649096251124	109.65	0.40824	109.65	109.37	109.78	0					9	7	2	0	0	0	0.74412	1	40129	40129		3.2813	0	1	722190			11841	29979	8455	8526	11569	11569					-0.005862425476038879
ENGEPIERY	9	Unmodified	_ENGEPIERY_					0	0	0			REV__ENSG00000143387|ENST00000271651|CTSK	REV__ENSG00000143387|ENST00000271651|CTSK	MULTI-MSMS	A375_MHC_IP_R1	1	555.1852416992188	2	553.759278	1105.504	-0.41933	-0.00023221	0.11511	6.3745E-05	-0.30422	-0.00016846	553.7592077043355	37.279	0.6105	37.279	36.945	37.556	0					27	11	4	0	0	0	0.57432	1	12569	12569		16.149	0.30192	1	8476000	+		11842	15665	8456	8527	11570	11570					-0.04452929667036187
ENGGKFSF	8	Unmodified	_ENGGKFSF_					0	0	0		ENSG00000102699|ENST00000381989|PARP4;PARP4|p.S40L|1|0.34|ENSG00000102699|chr13:24503658-24503658|G/A|missense_variant	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-SECPEP	A375_MHC_IP_R1	1	442.8993835449219	2	443.208692	884.402832	0.027484	1.2181E-05	0.24216	0.00010733	0.26964	0.00011951	443.20865597551915	43.451	0.35448	43.451	43.3	43.655	0					10	6	2	0	0	0	0.92867	1	15080	15080		13.042	8.7132	1	1140400			11843	2388	8457	8528	11571	11571					-0.043993365790925054
ENGGKFSF	8	Unmodified	_ENGGKFSF_					0	0	0		ENSG00000102699|ENST00000381989|PARP4;PARP4|p.S40L|1|0.34|ENSG00000102699|chr13:24503658-24503658|G/A|missense_variant	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-SECPEP	A375_MHC_IP_R2	2	442.947998046875	2	443.208692	884.402832	-0.29284	-0.00012979	-0.095215	-4.22E-05	-0.38805	-0.00017199	443.2085066177295	42.585	0.40608	43.358	43.167	43.573	0.7724					13	7	2	0	0	0	0.92636	1	15870	15870		11.64	3.7301	1	1308300			11844	2388	8457	8528	11572	11572					-0.043993365790925054
ENGLLNLNV	9	Unmodified	_ENGLLNLNV_					0	0	0			REV__ENSG00000173572|ENST00000342929|NLRP13	REV__ENSG00000173572|ENST00000342929|NLRP13	MULTI-MSMS	A375_MHC_IP_R2	2	493.6688537597656	2	493.269281	984.52401	-0.80844	-0.00039878	-0.069468	-3.4267E-05	-0.87791	-0.00043305	493.2693636844592	57.652	0.45824	58.401	58.17	58.629	0.74894					13	8	2	0	0	0	0.084766	1	21823	21823		53.404	3.8497	1	2998500	+		11845	21233	8458	8529	11573	11573					0.031128660635772576
ENGLLNLNV	9	Unmodified	_ENGLLNLNV_					0	0	0			REV__ENSG00000173572|ENST00000342929|NLRP13	REV__ENSG00000173572|ENST00000342929|NLRP13	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	493.269281	984.52401	-0.80844	-0.00039878	-0.069468	-3.4267E-05	-0.87791	-0.00043305	493.2693636844592	57.652	0.45824	58.401	58.17	58.629	0.74894	-0.0015313	-0.00010016	NaN	53.404	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2998500	+		11846	21233	8458	8529							0.031128660635772576
ENGLWFETTG	10	Unmodified	_ENGLWFETTG_					0	0	0			REV__nc|ENSG00000171557|P02679-2|FGG	REV__nc|ENSG00000171557|P02679-2|FGG	MULTI-MSMS	A375_MHC_IP_R2	2	576.65380859375	2	577.261653	1152.50875	-0.063955	-3.6919E-05	-0.68507	-0.00039547	-0.74903	-0.00043239	577.261190777335	68.77	0.86133	69.505	69.121	69.982	0.73511					31	16	3	0	0	0	0.69833	1	26039	26039		13.042	2.9685	1	11257000	+		11847	21077	8459	8530	11574	11574					-0.061400455242846874
ENGLWFETTG	10	Unmodified	_ENGLWFETTG_					0	0	0			REV__nc|ENSG00000171557|P02679-2|FGG	REV__nc|ENSG00000171557|P02679-2|FGG	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	577.261653	1152.50875	0.35528	0.00020509	-0.6535	-0.00037724	-0.29822	-0.00017215	577.2612307870579	69.465	0.75926	69.465	69.224	69.983	0	-0.020056	1.8257E-05	NaN	13.042	36	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11790000	+		11848	21077	8459	8530							-0.061400455242846874
ENGNLEVLV	9	Unmodified	_ENGNLEVLV_					0	0	0		ENSG00000164151|ENST00000296564|ICE1;ICE1|p.D492Efs*4|1|0.09|ENSG00000164151|chr5:5460809-5460810|-/AGCTTTG|frameshift_variant;ICE1|p.K493Sfs*51|1|0.07|ENSG00000164151|chr5:5460811-5460812|-/GTTTTATG|frameshift_variant	ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	MULTI-MSMS	A375_MHC_IP_R1	1	494.1607360839844	2	493.761289	985.508025	-0.18347	-9.0591E-05	-0.66232	-0.00032703	-0.84579	-0.00041762	493.7609262041617	117.69	0.65904	117.69	117.31	117.97	0					31	12	3	0	0	0	0.61998	1	43169	43169		13.906	0	1	21924000			11849	6791	8460	8531	11575	11575					0.014691598266722394
ENGNLEVLV	9	Unmodified	_ENGNLEVLV_					0	0	0		ENSG00000164151|ENST00000296564|ICE1;ICE1|p.D492Efs*4|1|0.09|ENSG00000164151|chr5:5460809-5460810|-/AGCTTTG|frameshift_variant;ICE1|p.K493Sfs*51|1|0.07|ENSG00000164151|chr5:5460811-5460812|-/GTTTTATG|frameshift_variant	ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	MULTI-MSMS	A375_MHC_IP_R2	2	494.160888671875	2	493.761289	985.508025	-0.3439	-0.0001698	-0.84736	-0.00041839	-1.1913	-0.0005882	493.76085121527365	116.54	0.76358	117.2	117.07	117.84	0.65962					24	14	2	0	0	0	0.61998	1	44070	44070		13.906	0	1	21774000			11850	6791	8460	8531	11576	11576					0.014691598266722394
ENGNLEVLV	9	Unmodified	_ENGNLEVLV_					0	0	0		ENSG00000164151|ENST00000296564|ICE1;ICE1|p.D492Efs*4|1|0.09|ENSG00000164151|chr5:5460809-5460810|-/AGCTTTG|frameshift_variant;ICE1|p.K493Sfs*51|1|0.07|ENSG00000164151|chr5:5460811-5460812|-/GTTTTATG|frameshift_variant	ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	493.761289	985.508025	-0.18347	-9.0591E-05	-0.66232	-0.00032703	-0.84579	-0.00041762	493.7609262041617	117.69	0.65904	117.69	117.31	117.97	0	0	0	NaN	13.906	31	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21924000			11851	6791	8460	8531							0.014691598266722394
ENGQMECCQT	10	Unmodified	_ENGQMECCQT_					0	0	0		ENSG00000144488|ENST00000343063|ESPNL	ENSG00000144488|ENST00000343063|ESPNL	ENSG00000144488|ENST00000343063|ESPNL	MSMS	A375_MHC_IP_R2	2	571.6762084960938	2	571.699191	1141.38383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.495	1	100.26	99.758	100.76	0.76278								0	0	0	0.15353	1	37741	37741		9.3831	2.0939	1				11852	5489	8461	8532	11577	11577					-0.18120745318969966
ENGRTYFVK	9	Unmodified	_ENGRTYFVK_					0	0	0		ANO5|p.D125N|1|0.29|ENSG00000171714|chr11:22227311-22227311|G/A|missense_variant	ANO5|p.D125N|1|0.29|ENSG00000171714|chr11:22227311-22227311|G/A|missense_variant	ANO5|p.D125N|1|0.29|ENSG00000171714|chr11:22227311-22227311|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	557.6876831054688	2	557.288005	1112.56146	-0.86277	-0.00048081	0.53474	0.00029801	-0.32803	-0.00018281	557.2882336130518	30.463	0.45496	30.463	30.351	30.806	0					14	8	2	0	0	0	0.69507	1	9742	9742		9.3831	0	1	1909400			11853	151	8462	8533	11578	11578					0.009679573292032728
ENGVMLVGKY	10	Unmodified	_ENGVMLVGKY_					0	0	0			REV__ENST00000588465.5_1_19:10713206-10745972:+|nuORF	REV__ENST00000588465.5_1_19:10713206-10745972:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	555.6862182617188	2	555.286617	1108.55868	-0.75146	-0.00041727	3.2946	0.0018294	2.5431	0.0014121	555.2870385711054	68.451	0.96211	68.451	68.057	69.02	0					40	18	3	0	0	0	0.90513	1	24779	24779		17.113	4.5813	1	4614500	+		11854	18489	8463	8534	11579	11579					0.008743658800312915
ENHIEWNV	8	Unmodified	_ENHIEWNV_					0	0	0		tr|U7SWM6|U7SWM6_FUSNUAlpha/betahydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01101PE=4SV=1	tr|U7SWM6|U7SWM6_FUSNUAlpha/betahydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01101PE=4SV=1	tr|U7SWM6|U7SWM6_FUSNUAlpha/betahydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01101PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	520.2362060546875	2	520.743431	1039.47231	-0.92819	-0.00048335	0.31349	0.00016325	-0.6147	-0.0003201	520.7435890249441	49.55	0.45546	50.307	50.096	50.551	0.75737					10	8	2	0	0	0	0.972	1	18543	18543		0.52476	0.52476	1	741110			11855	29812	8464	8535	11580	11580					-0.04584877630327355
ENIAPYIIF	9	Unmodified	_ENIAPYIIF_					0	0	0		tr|U7SJ15|U7SJ15_FUSNUDNAhelicaseRecQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02060PE=3SV=1	tr|U7SJ15|U7SJ15_FUSNUDNAhelicaseRecQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02060PE=3SV=1	tr|U7SJ15|U7SJ15_FUSNUDNAhelicaseRecQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02060PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	540.1741333007812	2	540.292225	1078.5699	-0.83425	-0.00045074	2.007	0.0010843	1.1727	0.0006336	540.2936715574577	105.58	0.50914	106.34	106.17	106.68	0.75977					15	9	3	0	0	0	0.60917	1	39881	39881		25.399	8.457	1	725290			11856	29441	8465	8536	11581	11581					0.033755112457811265
ENIDLWRDVII	11	Unmodified	_ENIDLWRDVII_					0	0	0			REV__nc|ENSG00000054654|Q8WXH0|SYNE2	REV__nc|ENSG00000054654|Q8WXH0|SYNE2	MSMS	A375_MHC_IP_R2	2	693.2740478515625	2	693.374809	1384.73507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.56	1	37.331	36.831	37.831	0.7709								0	0	0	0.16312	1	13337	13337		2.4985	0	1		+		11857	16407	8466	8537	11582	11582					0.0580869831480868
ENIHIVRHY	9	Unmodified	_ENIHIVRHY_					0	0	0			REV__ENSG00000187266|ENST00000222139|EPOR	REV__ENSG00000187266|ENST00000222139|EPOR	MULTI-SECPEP	A375_MHC_IP_R2	2	590.6630249023438	2	590.814722	1179.61489	-0.56136	-0.00033166	-1.2571	-0.00074269	-1.8184	-0.0010743	590.8141473737797	76.485	0.66135	77.225	76.943	77.604	0.74052					18	12	2	0	0	0	0.73363	1	29021	29021		10.824	4.1008	1	1018000	+		11858	22017	8467	8538	11583	11583					0.03226754831712242
ENIIHFLS	8	Unmodified	_ENIIHFLS_					0	0	0			REV__ENST00000356554.7_1_1:118070855-118071107:+|nuORF	REV__ENST00000356554.7_1_1:118070855-118071107:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	487.1609802246094	2	486.761092	971.507631	-0.2828	-0.00013765	-0.10058	-4.8958E-05	-0.38338	-0.00018661	486.76099585669635	50.366	0.61214	50.366	50.101	50.713	0					18	11	2	0	0	0	0.45507	1	17855	17855		50.855	2.5092	1	3754100	+		11859	23835	8468	8539	11584	11584					0.02073784897470432
ENIINSLW	8	Unmodified	_ENIINSLW_					0	0	0			REV__chrX:9741455-9759332|255|11.62|0.03|8.51|-|1|GPR143,GPR143|1	REV__chrX:9741455-9759332|255|11.62|0.03|8.51|-|1|GPR143,GPR143|1	MULTI-MSMS	A375_MHC_IP_R1	1	495.1824645996094	2	494.758549	987.502546	-0.29903	-0.00014795	0.45677	0.00022599	0.15774	7.8043E-05	494.7587205212437	70.819	0.66527	70.819	70.545	71.211	0					28	12	3	0	0	0	0.70783	1	25837	25837		32.305	0	1	6409600	+		11860	15785	8469	8540	11585	11585					0.00829481034861601
ENIKQANW	8	Unmodified	_ENIKQANW_					0	0	0		ENST00000466134.5_1_21:45719988-45734072:+|nuORF;ENSG00000141959|ENST00000349048|PFKL;nc|ENSG00000141959|P17858-2|PFKL;ENST00000397961.6_1_21:45725201-45746742:+|nuORF	ENST00000466134.5_1_21:45719988-45734072:+|nuORF	ENST00000466134.5_1_21:45719988-45734072:+|nuORF	MSMS	A375_MHC_IP_R2	2	501.6922302246094	2	501.753798	1001.49304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.227	1	81.971	81.471	82.471	0.74474								0	0	0	0.16876	1	30843	30843		13.906	1.6654	1				11861	5280	8470	8541	11586	11586					-0.007642872506721687
ENINEKIFI	9	Unmodified	_ENINEKIFI_					0	0	0		tr|U7SKA6|U7SKA6_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02161PE=4SV=1	tr|U7SKA6|U7SKA6_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02161PE=4SV=1	tr|U7SKA6|U7SKA6_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02161PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	560.7059326171875	2	560.305864	1118.59717	-0.44559	-0.00024966	0.39983	0.00022403	-0.045755	-2.5637E-05	560.3060416222041	103.16	1.1704	103.16	102.81	103.98	0					38	22	3	0	0	0	0.53098	1	37888	37888		29.082	9.8246	1	5845400			11862	29469	8471	8542	11587	11587					0.04261994786179457
ENINGGVEYLL	11	Unmodified	_ENINGGVEYLL_					0	0	0			REV__ENSG00000124143|ENST00000373345|ARHGAP40	REV__ENSG00000124143|ENST00000373345|ARHGAP40	MULTI-SECPEP	A375_MHC_IP_R2	2	407.6279296875	3	407.543432	1219.60847	-0.61113	-0.00024906	3.0305	0.0012351	2.4194	0.00098601	407.5451033855348	36.94	0.30547	37.711	37.461	37.767	0.7709					7	5	2	0	0	0	0.8011	1	13498	13498		29.281	14.443	1	505730	+		11863	18274	8472	8543	11588	11588					0.007447720896834653
ENIQRFFIAI	10	Unmodified	_ENIQRFFIAI_					0	0	0		ITGA1|p.S306F|1|0.1|ENSG00000213949|chr5:52887958-52887958|C/T|missense_variant	ITGA1|p.S306F|1|0.1|ENSG00000213949|chr5:52887958-52887958|C/T|missense_variant	ITGA1|p.S306F|1|0.1|ENSG00000213949|chr5:52887958-52887958|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	625.2100219726562	2	625.84823	1249.68191	-1.1143	-0.00069735	-0.83283	-0.00052123	-1.9471	-0.0012186	625.8446964013519	54.173	0.25446	54.924	54.712	54.967	0.75085					9	4	3	0	0	0	0.91909	1	20429	20429		13.906	0	1	1094200			11864	14176	8473	8544	11589	11589					0.0670536532281858
ENIQSVKAY	9	Unmodified	_ENIQSVKAY_					0	0	0		ENSG00000001626|ENST00000003084|CFTR;nc|ENSG00000001626|P13569-2|CFTR;nc|ENSG00000001626|P13569-3|CFTR	ENSG00000001626|ENST00000003084|CFTR	ENSG00000001626|ENST00000003084|CFTR	MULTI-SECPEP	A375_MHC_IP_R2	2	525.6256103515625	2	526.274564	1050.53457	-0.77351	-0.00040708	0.80071	0.00042139	0.027203	1.4316E-05	526.2746533746654	60.311	0.35873	61.056	60.801	61.16	0.74503					9	6	2	0	0	0	0.65527	1	22863	22863		22.736	7.898	1	692880			11865	848	8474	8545	11590	11590					0.011328487180207958
ENISRSELYHR	11	Unmodified	_ENISRSELYHR_					0	0	0			REV__ENST00000492793.1_1_2:201725957-201729378:-|nuORF	REV__ENST00000492793.1_1_2:201725957-201729378:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	702.7539672851562	2	702.354939	1402.69533	-1.0064	-0.00070682	-0.62798	-0.00044106	-1.6343	-0.0011479	702.3546314599749	29.123	0.40775	29.123	28.945	29.353	0					14	7	3	0	0	0	0.59391	1	9102	9102		23.79	0	1	5801700	+		11866	25414	8475	8546	11591	11591					0.01008571364081945
ENIVRLIKL	9	Unmodified	_ENIVRLIKL_					0	0	0			REV__ENSG00000155304|ENST00000285667|HSPA13	REV__ENSG00000155304|ENST00000285667|HSPA13	MULTI-SECPEP	A375_MHC_IP_R1	1	549.7553100585938	2	549.355691	1096.69683	-0.66675	-0.00036628	0.026137	1.4359E-05	-0.64061	-0.00035192	549.3555554517325	33.046	0.50572	33.046	32.785	33.291	0					15	9	2	0	0	0	0.49205	1	10764	10764		27.629	3.6082	1	2706200	+		11867	19920	8476	8547	11592	11592					0.15234857190785078
ENIVRLIKL	9	Unmodified	_ENIVRLIKL_					0	0	0			REV__ENSG00000155304|ENST00000285667|HSPA13	REV__ENSG00000155304|ENST00000285667|HSPA13	MULTI-MSMS	A375_MHC_IP_R2	2	549.755126953125	2	549.355691	1096.69683	-0.79731	-0.00043801	-0.13652	-7.4996E-05	-0.93383	-0.000513	549.355579297477	32.146	0.40652	32.882	32.654	33.061	0.73692					12	7	2	0	0	0	0.19747	1	11427	11427		38.176	11.907	1	3743600	+		11868	19920	8476	8547	11593	11593					0.15234857190785078
ENIWTGSVP	9	Unmodified	_ENIWTGSVP_					0	0	0		nc|ENSG00000139278|P48060-2|GLIPR1;ENSG00000139278|ENST00000266659|GLIPR1	nc|ENSG00000139278|P48060-2|GLIPR1	nc|ENSG00000139278|P48060-2|GLIPR1	MULTI-MSMS	A375_MHC_IP_R2	2	502.2558898925781	2	501.748182	1001.48181	-0.5861	-0.00029407	-0.4258	-0.00021364	-1.0119	-0.00050772	501.7479021322628	80.036	0.96297	80.781	80.505	81.468	0.74474					34	18	2	0	0	0	0.51106	1	30576	30576		19.257	19.257	1	10021000			11869	5065	8477	8548	11594	11594					-0.0188710934479559
ENIYQNFY	8	Unmodified	_ENIYQNFY_					0	0	0			REV__ENSG00000115850|ENST00000264162|LCT	REV__ENSG00000115850|ENST00000264162|LCT	MSMS	A375_MHC_IP_R2	2	545.6876220703125	2	545.745639	1089.47673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.536	1	70.27	69.77	70.77	0.73421								0	0	0	0.16876	1	26350	26350		14.582	2.0501	1		+		11870	17919	8478	8549	11595	11595					-0.06443413207421145
ENKEAFRSLEK	11	Unmodified	_ENKEAFRSLEK_					0	0	0		NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	676.064453125	2	675.854241	1349.69393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.85	1	108.85	108.35	109.35	0								0	0	0	0.16203	1	39928	39928		8.1555	0.54658	1				11871	4441	8479	8550	11596	11596					0.03306937275328892
ENKIRWYF	8	Unmodified	_ENKIRWYF_					0	0	0			REV__nc|ENSG00000052841|Q96AE7-2|TTC17	REV__nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MSMS	A375_MHC_IP_R1	1	385.93072509765625	3	385.869703	1154.58728	0.79651	0.00030735	0.40074	0.00015464	1.1973	0.00046199	385.8698619693392	44.725	0.71125	44.725	44.523	45.234	0					26	13	3	0	0	0	0.77636	1	15625	15625		8.1555	1.9637	1	2301400	+		11872	16394	8480	8551	11597	11597					0.01616851571452571
ENKKLEKESK	10	Unmodified	_ENKKLEKESK_					0	0	0		nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16;nc|ENSG00000156256|Q9Y5T5-5|USP16;ENST00000474835.5_1_21:30400234-30414894:+|nuORF	nc|ENSG00000156256|Q9Y5T5-3|USP16	nc|ENSG00000156256|Q9Y5T5-3|USP16	MULTI-SECPEP	A375_MHC_IP_R1	1	410.9749450683594	3	411.566348	1231.67722	0.34315	0.00014123	0.80589	0.00033168	1.149	0.00047291	411.566710111822	21.396	0.65913	21.396	20.997	21.656	0					16	12	2	0	0	0	0.93041	1	5659	5659		5.0475	0	1	1111400			11873	6183	8481	8552	11598	11598					0.07064436389350703
ENKKPTAIP	9	Unmodified	_ENKKPTAIP_					0	0	0		nc|ENSG00000292348|P14209-2|CD99;ENSG00000002586|ENST00000381192|CD99	nc|ENSG00000292348|P14209-2|CD99	nc|ENSG00000292348|P14209-2|CD99	MULTI-SECPEP	A375_MHC_IP_R1	1	498.6609802246094	2	499.287474	996.560395	-0.53321	-0.00026622	-0.056684	-2.8302E-05	-0.58989	-0.00029453	499.2874823749145	31.021	0.76022	31.021	30.754	31.514	0					30	14	3	0	0	0	0.76187	1	10017	10017		3.9444	3.9444	1	4494000			11874	854	8482	8553	11599	11599					0.061977429602734446
ENKKSKQY	8	Unmodified	_ENKKSKQY_					0	0	0		nc|ENSG00000146147|Q5VWP3-4|MLIP;ENST00000511744.1_1_6:53976250-54068425:+|nuORF;ENSG00000146147|ENST00000502396|MLIP	nc|ENSG00000146147|Q5VWP3-4|MLIP	nc|ENSG00000146147|Q5VWP3-4|MLIP	MULTI-SECPEP	A375_MHC_IP_R1	1	511.9880065917969	2	512.774731	1023.53491	-0.81762	-0.00041925	-4.0241	-0.0020634	-4.8417	-0.0024827	512.7740001308114	41.514	0.66424	41.514	41.368	42.032	0					14	12	2	0	0	0	0.95423	1	14313	14313		4.3292	0	1	992210			11875	5606	8483	8554	11600	11600					0.02408268437852712
ENKNIESNF	9	Unmodified	_ENKNIESNF_					0	0	0			REV__tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	REV__tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	548.14501953125	2	547.759278	1093.504	-0.73494	-0.00040257	-1.6786	-0.00091945	-2.4135	-0.001322	547.7584916533835	26.976	0.3503	26.976	26.828	27.179	0					9	6	2	0	0	0	0.22528	1	8123	8123		36.127	2.6821	1	2375200	+		11876	28411	8484	8555	11601	11601					-0.03900929667065611
ENKNRGLVP	9	Unmodified	_ENKNRGLVP_					0	0	0			REV__ENSG00000067191|ENST00000394303|CACNB1	REV__ENSG00000067191|ENST00000394303|CACNB1	MULTI-SECPEP	A375_MHC_IP_R1	1	513.9243774414062	2	513.788173	1025.56179	-0.68598	-0.00035245	-0.95573	-0.00049104	-1.6417	-0.00084349	513.7880835153744	24.332	0.2032	24.332	24.194	24.397	0					5	3	2	0	0	0	0.75466	1	6837	6837		4.3292	0	1	1230200	+		11877	16529	8485	8556	11602	11602					0.05003377049047231
ENKQFWKVYYE	11	Unmodified	_ENKQFWKVYYE_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MSMS	A375_MHC_IP_R2	2	767.7708740234375	2	767.372266	1532.72998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.392	1	58.141	57.641	58.641	0.74894								0	0	0	0.16258	1	21702	21702		5.2969	2.3016	1				11878	3688	8486	8557	11603	11603					-0.015076055477948103
ENKVFIRREE	10	Unmodified	_ENKVFIRREE_					0	0	0			REV__tr|U7STD7|U7STD7_FUSNUCysteinesynthaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01447PE=4SV=1	REV__tr|U7STD7|U7STD7_FUSNUCysteinesynthaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01447PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	440.2980041503906	3	440.573726	1318.69935	-0.39265	-0.00017299	0.41642	0.00018346	0.023763	1.0469E-05	440.5737692158144	32.726	0.25315	33.463	33.367	33.62	0.73691					7	4	2	0	0	0	0.93999	1	11715	11715		7.4771	5.0423	1	1056900	+		11879	28478	8487	8558	11604	11604					0.052746608578445375
ENKWHKAY	8	Unmodified	_ENKWHKAY_					0	0	0		ENST00000338963.6_1_15:56208884-56209049:-|nuORF	ENST00000338963.6_1_15:56208884-56209049:-|nuORF	ENST00000338963.6_1_15:56208884-56209049:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	538.6680908203125	2	538.269616	1074.52468	-0.83333	-0.00044855	-2.1623	-0.0011639	-2.9956	-0.0016124	538.2685249256779	62.906	0.65659	63.649	63.383	64.04	0.74263					19	8	3	0	0	0	0.77603	2	23902	23902;23920		9.3474	2.0582	1	2051300			11880	10840	8488	8559	11605;11606	11605					-0.009602944967127769
ENLCHTEIFDC	11	Unmodified	_ENLCHTEIFDC_					0	0	0			REV__ENST00000432137.1_1_9:15527225-15527390:-|nuORF	REV__ENST00000432137.1_1_9:15527225-15527390:-|nuORF	MSMS	A375_MHC_IP_R2	2	662.4066162109375	2	662.270838	1322.52712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.334	1	85.072	84.572	85.572	0.73772								0	0	0	0.16138	1	32057	32057		11.495	3.3392	1		+		11881	24710	8489	8560	11607	11607					-0.12123994936246163
ENLCQSQLS	9	Unmodified	_ENLCQSQLS_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MSMS	A375_MHC_IP_R2	2	511.1531066894531	2	511.234581	1020.45461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.019	1	80.764	80.264	81.264	0.74474								0	0	0	0.13673	1	30376	30376		30.637	5.2372	1		+		11882	22253	8490	8561	11608	11608					-0.05479960947491236
ENLEVKWL	8	Unmodified	_ENLEVKWL_					0	0	0			REV__ENST00000607647.5_1_7:135282676-135283553:+|nuORF	REV__ENST00000607647.5_1_7:135282676-135283553:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	515.6644287109375	2	515.782025	1029.5495	-1.1285	-0.00058205	-0.38318	-0.00019764	-1.5117	-0.00077969	515.781944374239	58.854	0.65967	59.602	59.134	59.793	0.74714					16	12	2	0	0	0	0.84748	1	22182	22182		21.747	0	1	3412200	+		11883	26550	8491	8562	11609	11609					0.035903405860153725
ENLFRAFLG	9	Unmodified	_ENLFRAFLG_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	A375_MHC_IP_R2	2	534.186767578125	2	533.787641	1065.56073	-0.69925	-0.00037325	-0.73949	-0.00039473	-1.4387	-0.00076798	533.7868861222086	104.95	0.91589	105.71	105.21	106.12	0.76308					31	17	3	0	0	0	0.37663	1	39697	39697		29.841	4.4413	1	5811100			11884	9866	8492	8563	11610	11610					0.030571626801247476
ENLGHKRT	8	Unmodified	_ENLGHKRT_					0	0	0		ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	MSMS	A375_MHC_IP_R2	2	477.6741638183594	2	477.759415	953.504277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.455	1	39.229	38.729	39.729	0.77451								0	0	0	0.16876	1	14154	14154		28.487	1.6032	1				11885	2912	8493	8564	11611	11611					0.02566534843469981
ENLKEILNL	9	Unmodified	_ENLKEILNL_					0	0	0			REV__CYP2C9|p.M198I|1|0.48|ENSG00000138109|chr10:94947891-94947891|G/A|missense_variant	REV__CYP2C9|p.M198I|1|0.48|ENSG00000138109|chr10:94947891-94947891|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	543.6503295898438	2	543.313689	1084.61282	-0.7918	-0.00043019	-0.58511	-0.0003179	-1.3769	-0.00074809	543.3129670006679	86.096	0.30283	86.096	85.921	86.224	0					7	5	2	0	0	0	0.39388	1	31553	31553		32.305	1.0371	1	1945300	+		11886	15952	8494	8565	11612	11612					0.07390281303219126
ENLKGRKQL	9	Unmodified	_ENLKGRKQL_					0	0	0		ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	MULTI-SECPEP	A375_MHC_IP_R1	1	543.7241821289062	2	543.324922	1084.63529	-0.36329	-0.00019738	-0.64431	-0.00035007	-1.0076	-0.00054745	543.3245174872334	35.657	0.51044	35.657	35.472	35.982	0					20	9	3	0	0	0	0.49205	1	11876	11876		27.629	7.2143	1	10121000			11887	7641	8495	8566	11613	11613					0.09635925491511443
ENLKLTYGY	9	Unmodified	_ENLKLTYGY_					0	0	0		PRAMEF14|p.E299K|1|0.11|ENSG00000204481|chr1:13343058-13343058|C/T|missense_variant;PRAMEF1|p.E299K|1|0.07|ENSG00000116721|chr1:12795466-12795466|G/A|missense_variant	PRAMEF14|p.E299K|1|0.11|ENSG00000204481|chr1:13343058-13343058|C/T|missense_variant	PRAMEF14|p.E299K|1|0.11|ENSG00000204481|chr1:13343058-13343058|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	550.163330078125	2	550.784764	1099.55498	-0.88514	-0.00048752	-0.39343	-0.00021669	-1.2786	-0.00070421	550.7846586781171	33.024	0.25574	33.765	33.624	33.88	0.74089					6	4	2	0	0	0	0.69504	1	11829	11829		12.532	3.9383	1	2034200			11888	15219	8496	8567	11614	11614					0.009180193778320245
ENLKQIHF	8	Unmodified	_ENLKQIHF_					0	0	0		nc|ENSG00000154822|Q9UPR0-3|PLCL2;ENSG00000154822|ENST00000615277|PLCL2	nc|ENSG00000154822|Q9UPR0-3|PLCL2	nc|ENSG00000154822|Q9UPR0-3|PLCL2	MULTI-MSMS	A375_MHC_IP_R2	2	515.1796264648438	2	514.779816	1027.54508	-0.76049	-0.00039148	0.10164	5.2322E-05	-0.65885	-0.00033916	514.7797500091625	73.042	1.4269	73.778	73.175	74.602	0.7354					45	19	3	0	0	0	0.45507	2	27778	27727;27778		50.855	4.8341	1	18936000			11889	6111	8497	8568	11615;11616	11616					0.03240876163090434
ENLKQIHF	8	Unmodified	_ENLKQIHF_					0	0	0		nc|ENSG00000154822|Q9UPR0-3|PLCL2;ENSG00000154822|ENST00000615277|PLCL2	nc|ENSG00000154822|Q9UPR0-3|PLCL2	nc|ENSG00000154822|Q9UPR0-3|PLCL2	MULTI-SECPEP	A375_MHC_IP_R2	2	515.1792602539062	2	514.779816	1027.54508	-1.1035	-0.00056807	-0.61379	-0.00031597	-1.7173	-0.00088404	514.7794762366884	58.665	0.40559	59.414	59.187	59.592	0.74894					13	7	2	0	0	0	0.84748	1	22214	22214		36.044	3.7387	1	1504900			11890	6111	8497	8568	11617	11617					0.03240876163090434
ENLKQIHF	8	Unmodified	_ENLKQIHF_					0	0	0		nc|ENSG00000154822|Q9UPR0-3|PLCL2;ENSG00000154822|ENST00000615277|PLCL2	nc|ENSG00000154822|Q9UPR0-3|PLCL2	nc|ENSG00000154822|Q9UPR0-3|PLCL2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	514.779816	1027.54508	-0.76049	-0.00039148	0.10164	5.2322E-05	-0.65885	-0.00033916	514.7797500091625	73.042	1.4269	73.778	73.175	74.602	0.7354	-0.035552	2.3266E-05	NaN	50.855	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18936000			11891	6111	8497	8568							0.03240876163090434
ENLLWRYSLGP	11	Unmodified	_ENLLWRYSLGP_					0	0	0			REV__ENSG00000184144|ENST00000331830|CNTN2	REV__ENSG00000184144|ENST00000331830|CNTN2	MSMS	A375_MHC_IP_R1	1	674.2485961914062	2	674.356419	1346.69829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.73	1	100.73	100.23	101.23	0								0	0	0	0.16232	1	37025	37025		6.6304	1.3335	1		+		11892	21798	8498	8569	11618	11618					0.038804464888926304
ENLMICQGFLE	11	Unmodified	_ENLMICQGFLE_					0	0	0			REV__ENST00000373202.7_1_10:72639263-72639515:+|nuORF	REV__ENST00000373202.7_1_10:72639263-72639515:+|nuORF	MSMS	A375_MHC_IP_R1	1	648.685791015625	2	648.801774	1295.58899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.203	1	52.203	51.703	52.703	0								0	0	0	0.14085	1	18556	18556		26.268	3.5319	1		+		11893	24085	8499	8570	11619	11619					-0.04697643517101824
ENLPELTEHF	10	Unmodified	_ENLPELTEHF_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST;REV__nc|ENSG00000151914|Q03001-8|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	A375_MHC_IP_R2	2	614.6795043945312	2	614.79586	1227.57717	-0.5692	-0.00034994	0.20055	0.00012329	-0.36866	-0.00022665	614.7960072361636	67.552	0.76253	68.289	67.9	68.663	0.73631					36	14	3	0	0	0	0.73104	1	25457	25457		24.991	8.8419	1	6341800	+		11894	19783;27289	8500	8571	11620	11620					-0.027518009444293057
ENLQFSPGI	9	Unmodified	_ENLQFSPGI_					0	0	0		ENSG00000153498|ENST00000283550|SPACA7	ENSG00000153498|ENST00000283550|SPACA7	ENSG00000153498|ENST00000283550|SPACA7	MULTI-MSMS	A375_MHC_IP_R1	1	502.69500732421875	2	502.756007	1003.49746	-0.50197	-0.00025237	0.37076	0.0001864	-0.13121	-6.5964E-05	502.75597163976374	80.82	1.1154	80.82	80.441	81.556	0					37	20	3	0	0	0	0.32092	1	29492	29492		29.082	6.3453	1	10542000			11895	6034	8501	8572	11621	11621					-0.004148228277585986
ENLQFSPGI	9	Unmodified	_ENLQFSPGI_					0	0	0		ENSG00000153498|ENST00000283550|SPACA7	ENSG00000153498|ENST00000283550|SPACA7	ENSG00000153498|ENST00000283550|SPACA7	MULTI-MSMS	A375_MHC_IP_R2	2	502.69451904296875	2	502.756007	1003.49746	-0.61072	-0.00030704	-0.32124	-0.0001615	-0.93196	-0.00046855	502.75567084409056	80.04	0.70956	80.784	80.453	81.163	0.74474					21	13	2	0	0	0	0.55471	1	30481	30481		17.113	4.8722	1	10703000			11896	6034	8501	8572	11622	11622					-0.004148228277585986
ENLQPELF	8	Unmodified	_ENLQPELF_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MSMS	A375_MHC_IP_R1	1	495.15863037109375	2	495.250557	988.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.057	1	54.057	53.557	54.557	0								0	0	0	0.16876	1	19286	19286		32.305	9.1571	1		+		11897	22171	8502	8573	11623	11623					-0.008142252020320484
ENLRQKRLDEY	11	Unmodified	_ENLRQKRLDEY_					0	0	0			REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF	REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF	MSMS	A375_MHC_IP_R2	2	732.5030517578125	2	732.383697	1462.75284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.9	1	110.64	110.14	111.14	0.74684								0	0	0	0.16249	1	41464	41464		5.7319	0.43497	1		+		11898	17805	8503	8574	11624	11624					0.03997413569663877
ENLSAILNY	9	Unmodified	_ENLSAILNY_					0	0	0			REV__tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	REV__tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	MSMS	A375_MHC_IP_R1	1	518.6951904296875	2	518.769114	1035.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.081	1	67.081	66.581	67.581	0								0	0	0	0.15069	1	24304	24304		20.454	1.1966	1		+		11899	28383	8504	8575	11625	11625					0.007334463437246086
ENLWKEKI	8	Unmodified	_ENLWKEKI_					0	0	0			REV__nc|ENSG00000072135|Q99952-2|PTPN18	REV__nc|ENSG00000072135|Q99952-2|PTPN18	MULTI-SECPEP	A375_MHC_IP_R1	1	529.9630737304688	2	530.295299	1058.57605	-0.43604	-0.00023123	0.45753	0.00024263	0.02149	1.1396E-05	530.2954229490068	47.717	0.80751	47.717	47.315	48.122	0					18	15	2	0	0	0	0.92091	1	16790	16790		25.399	0	1	2247000	+		11900	16599	8505	8576	11626	11626					0.049100294773325004
ENLYHTEI	8	Unmodified	_ENLYHTEI_					0	0	0			REV__ENST00000394290.3_1_2:27615653-27615842:-|nuORF	REV__ENST00000394290.3_1_2:27615653-27615842:-|nuORF	MSMS	A375_MHC_IP_R2	2	509.70361328125	2	509.745639	1017.47673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.161	1	80.906	80.406	81.406	0.74474								0	0	0	0.16876	1	30431	30431		15.847	1.9411	1		+		11901	20813	8506	8577	11627	11627					-0.03131413207438527
ENMQKFLRLIF	11	Unmodified	_ENMQKFLRLIF_					0	0	0		ENST00000527451.1_1_11:130773148-130776010:-|nuORF;ENST00000526579.5_1_11:130748389-130775881:-|nuORF;ENST00000580193.1_1_18:14630000-14630792:-|nuORF;ENST00000444901.1_1_21:14899938-14900730:+|nuORF;ENSG00000120451|ENST00000265909|SNX19	ENST00000527451.1_1_11:130773148-130776010:-|nuORF	ENST00000527451.1_1_11:130773148-130776010:-|nuORF	MSMS	A375_MHC_IP_R2	2	719.8685302734375	2	719.897397	1437.78024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.544	1	90.276	89.776	90.776	0.7318								0	0	0	0.16302	1	34074	34074		2.9952	0	1				11902	3664	8507	8578	11628	11628					0.07886225576339712
ENMSPLEALE	10	Unmodified	_ENMSPLEALE_					0	0	0		nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	MSMS	A375_MHC_IP_R1	1	566.705078125	2	566.763171	1131.51179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.08	1	31.08	30.58	31.58	0								0	0	0	0.15391	1	9932	9932		8.1555	0	1				11903	5927	8508	8579	11629	11629					-0.04870538461796059
ENNDELHWEY	10	Unmodified	_ENNDELHWEY_					0	0	0			REV__ENSG00000125675|ENST00000620443|GRIA3	REV__ENSG00000125675|ENST00000620443|GRIA3	MULTI-SECPEP	A375_MHC_IP_R1	1	450.9783020019531	3	450.186196	1347.53676	-0.13553	-6.1012E-05	0.96058	0.00043244	0.82505	0.00037143	450.1867500096919	61.662	0.51088	61.662	61.432	61.943	0					14	9	2	0	0	0	0.94363	1	22160	22160		1.4551	0	1	1694000	+		11904	18355	8509	8580	11630	11630					-0.12310767334815864
ENNFLDYY	8	Unmodified	_ENNFLDYY_					0	0	0		nc|ENSG00000214694|A8MVX0|ARHGEF33;ENSG00000214694|ENST00000409978|ARHGEF33	nc|ENSG00000214694|A8MVX0|ARHGEF33	nc|ENSG00000214694|A8MVX0|ARHGEF33	MULTI-MSMS	A375_MHC_IP_R2	2	539.2388305664062	2	539.229822	1076.44509	-0.84212	-0.0004541	0.54559	0.0002942	-0.29653	-0.0001599	539.2305067348577	76.019	0.96736	76.759	76.282	77.25	0.74052					32	18	3	0	0	0	0.77603	1	28753	28753		9.3474	1.4373	1	2918700			11905	9622	8510	8581	11631	11631					-0.09007405961392578
ENNHLRQY	8	Unmodified	_ENNHLRQY_					0	0	0		ENSG00000205835|ENST00000442080|GMNC	ENSG00000205835|ENST00000442080|GMNC	ENSG00000205835|ENST00000442080|GMNC	MULTI-SECPEP	A375_MHC_IP_R2	2	537.6766357421875	2	537.259779	1072.50501	-0.91783	-0.00049311	3.3054	0.0017759	2.3876	0.0012828	537.763846288162	39.975	0.50832	40.75	40.371	40.879	0.77451					16	9	3	0	0	0	0.97144	1	14688	14688		5.2307	0	1	1677600			11906	9528	8511	8582	11632	11632					-0.02834670507490955
ENNIKTFY	8	Unmodified	_ENNIKTFY_					0	0	0			REV__tr|U7T6K8|U7T6K8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00279PE=4SV=1	REV__tr|U7T6K8|U7T6K8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00279PE=4SV=1	MSMS	A375_MHC_IP_R2	2	514.6636352539062	2	514.756007	1027.49746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.057	1	80.802	80.302	81.302	0.74474								0	0	0	0.16876	1	30390	30390		18.135	1.0221	1		+		11907	28866	8512	8583	11633	11633					-0.01518822827756594
ENNNSTPDP	9	Unmodified	_ENNNSTPDP_					0	0	0		ENST00000523223.1_1_5:170679154-170679559:+|nuORF;ENSG00000152484|ENST00000282344|USP12	ENST00000523223.1_1_5:170679154-170679559:+|nuORF	ENST00000523223.1_1_5:170679154-170679559:+|nuORF	MSMS	A375_MHC_IP_R2	2	494.18682861328125	2	494.204335	986.394118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.92	1	69.656	69.156	70.156	0.73511								0	0	0	0.1535	1	26115	26115		15.847	1.2655	1				11908	5968	8513	8584	11634	11634					-0.09962355006234702
ENNNVDKDKP	10	Unmodified	_ENNNVDKDKP_					0	0	0		nc|ENSG00000137760|Q96BT7-3|ALKBH8;nc|ENSG00000137760|Q96BT7-2|ALKBH8;ENSG00000137760|ENST00000428149|ALKBH8;nc|ENSG00000137760|Q96BT7-4|ALKBH8	nc|ENSG00000137760|Q96BT7-3|ALKBH8	nc|ENSG00000137760|Q96BT7-3|ALKBH8	MSMS	A375_MHC_IP_R1	1	587.139404296875	2	586.780741	1171.54693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.483	1	68.483	67.983	68.983	0								0	0	0	0.14864	1	24831	24831		20.415	3.4722	1				11909	4910	8514	8585	11635	11635					-0.03198159609632967
ENNNYIIAN	9	Unmodified	_ENNNYIIAN_					0	0	0			REV__TKT|p.P475S|1|0.32|ENSG00000163931|chr3:53228332-53228332|G/A|missense_variant	REV__TKT|p.P475S|1|0.32|ENSG00000163931|chr3:53228332-53228332|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	532.6669311523438	2	532.753995	1063.49344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.867	1	34.62	34.12	35.12	0.75225								0	0	0	0.1521	1	12166	12166		18.146	0	1		+		11910	20426	8515	8586	11636	11636					-0.03576912321477721
ENNQLHVT	8	Unmodified	_ENNQLHVT_					0	0	0		ENST00000513468.5_1_5:54516196-54522465:-|nuORF;ENSG00000234602|ENST00000513312|MCIDAS	ENST00000513468.5_1_5:54516196-54522465:-|nuORF	ENST00000513468.5_1_5:54516196-54522465:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	478.1756896972656	2	477.735606	953.456658	-0.43036	-0.0002056	-3.0361	-0.0014504	-3.4664	-0.001656	477.7336281673062	79.334	0.25318	80.079	79.946	80.199	0.74474					6	4	2	0	0	0	0.96266	1	30149	30149		11.64	0	1	1119000			11911	9740	8516	8587	11637	11637					-0.02193164147377047
ENNSIWELI	9	Unmodified	_ENNSIWELI_					0	0	0		nc|ENSG00000146426|Q8IVF5-4|TIAM2;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2;nc|ENSG00000146426|Q8IVF5-3|TIAM2	nc|ENSG00000146426|Q8IVF5-4|TIAM2	nc|ENSG00000146426|Q8IVF5-4|TIAM2	MULTI-SECPEP	A375_MHC_IP_R2	2	372.9521484375	3	373.188989	1116.54514	0.38244	0.00014272	-0.61021	-0.00022772	-0.22776	-8.4999E-05	373.18861073733734	32.35	0.61211	33.087	32.755	33.367	0.73692					26	11	3	0	0	0	0.73363	1	11420	11420		4.1895	0	1	13698000			11912	5623	8517	8588	11638	11638					-0.00847168627569772
ENNVAQLQEE	10	Unmodified	_ENNVAQLQEE_					0	0	0		ENSG00000142459|ENST00000538904|EVI5L;nc|ENSG00000142459|Q96CN4|EVI5L	ENSG00000142459|ENST00000538904|EVI5L	ENSG00000142459|ENST00000538904|EVI5L	MULTI-SECPEP	A375_MHC_IP_R2	2	586.6494140625	2	587.272749	1172.53095	-0.5609	-0.0003294	1.5527	0.00091188	0.99183	0.00058248	587.774244890778	76.484	0.40614	77.225	77.045	77.451	0.74052					11	7	2	0	0	0	0.90513	1	28975	28975		17.113	7.039	1	1620300			11913	5309	8518	8589	11639	11639					-0.048418658465152475
ENNVQVLQKQ	10	Unmodified	_ENNVQVLQKQ_					0	0	0		nc|ENSG00000111879|Q8NB25-2|FAM184A;FAM184A|p.Q613Hfs*10|1|0.23|ENSG00000111879|chr6:119003599-119003599|T/-|frameshift_variant;nc|ENSG00000111879|Q8NB25-3|FAM184A;ENSG00000111879|ENST00000338891|FAM184A;nc|ENSG00000111879|Q8NB25-4|FAM184A	nc|ENSG00000111879|Q8NB25-2|FAM184A	nc|ENSG00000111879|Q8NB25-2|FAM184A	MULTI-SECPEP	A375_MHC_IP_R2	2	600.1719360351562	2	600.322576	1198.6306	-0.44468	-0.00026695	-4.4513	-0.0026722	-4.8959	-0.0029391	600.319191210845	42.475	0.40706	43.248	43.014	43.421	0.7724					14	7	3	0	0	0	0.81532	1	15827	15827		14.405	4.2548	1	879390			11914	14545	8519	8590	11640	11640					0.039229965580943826
ENNWRNEY	8	Unmodified	_ENNWRNEY_					0	0	0		ENST00000568315.1_1_16:68318506-68336404:-|nuORF;ENSG00000103061|ENST00000263997|SLC7A6OS	ENST00000568315.1_1_16:68318506-68336404:-|nuORF	ENST00000568315.1_1_16:68318506-68336404:-|nuORF	MSMS	A375_MHC_IP_R1	1	562.6251831054688	2	562.741419	1123.46829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.049	1	77.049	76.549	77.549	0								0	0	0	0.16876	1	28098	28098		21.747	2.3076	1				11915	2417	8520	8591	11641	11641					-0.08850967124044473
ENNWYYLA	8	Unmodified	_ENNWYYLA_					0	0	0			REV__nc|ENSG00000112640|Q14738-3|PPP2R5D;REV__ENST00000417282.1_1_7:56372411-56373020:-|nuORF	REV__ENST00000417282.1_1_7:56372411-56373020:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	357.930908203125	3	358.162663	1071.46616	0.42699	0.00015293	-1.8928	-0.00067794	-1.4658	-0.00052501	358.16198678956437	48.369	0.40458	48.369	48.173	48.577	0					12	7	2	0	0	0	0.972	1	17035	17035		0.35063	0.081612	1	1259500	+		11916	17742;19860	8521	8592	11642	11642					-0.06671395861849305
ENNYDVHSY	9	Unmodified	_ENNYDVHSY_					0	0	0			REV__GLYAT|p.S268N|1|0.25|ENSG00000149124|chr11:58709854-58709854|C/T|missense_variant	REV__GLYAT|p.S268N|1|0.25|ENSG00000149124|chr11:58709854-58709854|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	570.5919799804688	2	570.73326	1139.45197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.94	1	103.94	103.44	104.44	0								0	0	0	0.15486	1	38166	38166		6.2058	1.4498	1		+		11917	26688	8522	8593	11643	11643					-0.11218093080810831
ENPAPDWLSD	10	Unmodified	_ENPAPDWLSD_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;ENST00000488988.5_1_3:52422617-52433783:+|nuORF;ENST00000486752.5_1_3:52422617-52434459:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-MSMS	A375_MHC_IP_R1	1	573.7136840820312	2	572.251286	1142.48802	-0.31234	-0.00017874	-0.20216	-0.00011568	-0.5145	-0.00029442	572.2512447890164	77.068	1.2727	77.068	76.622	77.895	0					63	24	4	0	0	0	0.69833	1	28109	28109		13.042	2.2185	1	10813000			11918	3248	8523	8594	11644	11644					-0.07752635903943883
ENPEPKKYE	9	Unmodified	_ENPEPKKYE_					0	0	0		tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	567.6407470703125	2	567.277303	1132.54005	-0.44305	-0.00025133	-1.4929	-0.00084687	-1.9359	-0.0010982	567.2764472850878	46.52	0.40324	46.52	46.295	46.699	0					11	7	2	0	0	0	0.65527	1	16313	16313		17.113	7.039	1	2717900			11919	29475	8524	8595	11645	11645					-0.020914724902013404
ENPFKKMKNN	10	Unmodified	_ENPFKKMKNN_					0	0	0		NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant;ENSG00000180530|ENST00000318948|NRIP1	NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant	NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	624.7217407226562	2	625.321522	1248.62849	-0.43759	-0.00027363	-3.1277	-0.0019558	-3.5653	-0.0022295	625.3184788221904	56.13	0.30309	56.13	55.891	56.194	0					6	5	2	0	0	0	0.92514	1	20082	20082		4.897	0.36815	1	1211500			11920	8302	8525	8596	11646	11646					0.01412244548646413
ENPLLVPLE	9	Unmodified	_ENPLLVPLE_					0	0	0		ENSG00000108592|ENST00000427159|FTSJ3;ENST00000583202.5_1_17:61898213-61899202:-|nuORF	ENSG00000108592|ENST00000427159|FTSJ3	ENSG00000108592|ENST00000427159|FTSJ3	MULTI-SECPEP	A375_MHC_IP_R1	1	512.6343994140625	2	512.289682	1022.56481	-0.43582	-0.00022327	-0.8554	-0.00043821	-1.2912	-0.00066148	512.2891912961281	63.438	1.0718	63.438	63.069	64.141	0					32	20	3	0	0	0	0.69507	1	22864	22864		9.3831	0	1	5087000			11921	2821	8526	8597	11647	11647					0.054432073831776506
ENPSRLEAF	9	Unmodified	_ENPSRLEAF_					0	0	0			REV__ENST00000577409.1_1_18:72183591-72185955:+|nuORF	REV__ENST00000577409.1_1_18:72183591-72185955:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	532.1642456054688	2	531.764363	1061.51417	-0.70629	-0.00037558	-0.065132	-3.4635E-05	-0.77142	-0.00041021	531.7642201783253	39.622	0.71052	40.397	40.118	40.828	0.77451					18	13	2	0	0	0	0.23894	1	14673	14673		47.594	5.6388	1	3122200	+		11922	18716	8527	8598	11648	11648					-0.01412321941825212
ENPTNQTW	8	Unmodified	_ENPTNQTW_					0	0	0			REV__nc|ENSG00000149639|O94964-4|MTCL2	REV__nc|ENSG00000149639|O94964-4|MTCL2	MSMS	A375_MHC_IP_R2	2	495.1799621582031	2	495.219788	988.425024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.14	1	142.17	141.67	142.67	0.030731								0	0	0	0.16876	1	55571	55571		4.3292	0.38484	1		+		11923	19694	8528	8599	11649	11649					-0.06965156901321734
ENQDRYYSRWL	11	Unmodified	_ENQDRYYSRWL_					0	0	0		ENST00000442181.5_1_2:170669006-170672015:-|nuORF	ENST00000442181.5_1_2:170669006-170672015:-|nuORF	ENST00000442181.5_1_2:170669006-170672015:-|nuORF	MSMS	A375_MHC_IP_R1	1	510.6429748535156	3	510.575907	1528.70589	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.743	1	29.743	29.243	30.243	0								0	0	0	0.16309	1	9363	9363		2.6312	0.37851	1				11924	11990	8529	8600	11650	11650					-0.03731445981497927
ENQEESFG	8	Unmodified	_ENQEESFG_					0	0	0		nc|ENSG00000180376|A2RUB6-3|CCDC66;ENSG00000180376|ENST00000394672|CCDC66	nc|ENSG00000180376|A2RUB6-3|CCDC66	nc|ENSG00000180376|A2RUB6-3|CCDC66	MSMS	A375_MHC_IP_R2	2	470.1503601074219	2	470.188154	938.361755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.455	1	50.213	49.713	50.713	0.75737								0	0	0	0.16876	1	18584	18584		12.532	0	1				11925	8293	8530	8601	11651	11651					-0.10989142409221131
ENQIYQPENY	10	Unmodified	_ENQIYQPENY_					0	0	0		ENST00000318887.7_1_3:88205589-88205667:+|nuORF	ENST00000318887.7_1_3:88205589-88205667:+|nuORF	ENST00000318887.7_1_3:88205589-88205667:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	648.7796020507812	2	649.288399	1296.56225	-0.42173	-0.00027382	-0.50413	-0.00032732	-0.92585	-0.00060115	649.2881238041598	91.374	0.60777	91.374	91.199	91.807	0					17	11	2	0	0	0	0.93799	1	33519	33519		3.5965	0	1	2021400			11926	10677	8531	8602	11652	11652					-0.07417292812419873
ENQKVSIQM	9	Unmodified	_ENQKVSIQM_					0	0	0			REV__ENSG00000134262|ENST00000369569|AP4B1	REV__ENSG00000134262|ENST00000369569|AP4B1	MSMS	A375_MHC_IP_R2	2	538.7125854492188	2	538.773874	1075.53319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.934	1	50.688	50.188	51.188	0.75406								0	0	0	0.12988	1	18771	18771		32.786	4.2988	1		+		11927	18765	8532	8603	11653	11653					-0.0015510864241150557
ENQLGVHSY	9	Unmodified	_ENQLGVHSY_					0	0	0		ENST00000367505.6_1_6:146276417-146285333:-|nuORF	ENST00000367505.6_1_6:146276417-146285333:-|nuORF	ENST00000367505.6_1_6:146276417-146285333:-|nuORF	MSMS	A375_MHC_IP_R1	1	523.8160400390625	2	523.748713	1045.48287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.127	1	22.127	21.627	22.627	0								0	0	0	0.15486	1	5906	5906		4.3292	0	1				11928	11093	8533	8604	11654	11654					-0.03804894975883144
ENQWNELL	8	Unmodified	_ENQWNELL_					0	0	0		nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENSG00000119522|ENST00000394215|DENND1A;nc|ENSG00000119522|Q8TEH3-4|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;ENST00000473039.5_1_9:126143713-126520026:-|nuORF;ENST00000474676.1_1_9:126331853-126520026:-|nuORF	nc|ENSG00000119522|Q8TEH3-5|DENND1A	nc|ENSG00000119522|Q8TEH3-5|DENND1A	MULTI-MSMS	A375_MHC_IP_R2	2	524.2072143554688	2	523.251089	1044.48762	-1.162	-0.00060799	0.54209	0.00028365	-0.61987	-0.00032435	523.2512195201783	29.572	0.91074	30.271	30.032	30.942	0.69872					30	17	3	0	0	0	0.76654	1	10270	10270		15.847	3.3156	1	5784600			11929	3600	8534	8605	11655	11655					-0.032840108331583906
ENRAPGLRGG	10	Unmodified	_ENRAPGLRGG_					0	0	0		ENST00000354625.6_1_14:75388756-75388957:-|nuORF	ENST00000354625.6_1_14:75388756-75388957:-|nuORF	ENST00000354625.6_1_14:75388756-75388957:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	513.9243774414062	2	513.775597	1025.53664	-0.70296	-0.00036116	0.24779	0.00012731	-0.45517	-0.00023385	513.7756552713481	24.207	0.45589	24.207	24.042	24.498	0					18	8	4	0	0	0	0.9269	1	6837	6837		6.7232	1.4925	1	5486600			11930	10943	8535	8606	11656	11656					0.02489322246469783
ENRFIQYF	8	Unmodified	_ENRFIQYF_					0	0	0		ENSG00000164187|ENST00000296603|LMBRD2	ENSG00000164187|ENST00000296603|LMBRD2	ENSG00000164187|ENST00000296603|LMBRD2	MULTI-SECPEP	A375_MHC_IP_R1	1	372.3044738769531	3	372.853941	1115.53999	0.39212	0.0001462	-0.13463	-5.0196E-05	0.2575	9.6009E-05	372.8538441135785	34.947	0.66137	34.947	34.759	35.421	0					17	12	2	0	0	0	0.972	1	11555	11555		8.7454	1.2683	1	6333400			11931	6798	8536	8607	11657	11657					-0.013154276995237524
ENRFIQYF	8	Unmodified	_ENRFIQYF_					0	0	0		ENSG00000164187|ENST00000296603|LMBRD2	ENSG00000164187|ENST00000296603|LMBRD2	ENSG00000164187|ENST00000296603|LMBRD2	MULTI-SECPEP	A375_MHC_IP_R2	2	373.5883483886719	3	372.853941	1115.53999	0.08907	3.321E-05	-0.10303	-3.8414E-05	-0.013957	-5.2039E-06	372.85377394075203	34.177	0.50865	34.929	34.753	35.262	0.75225					15	9	2	0	0	0	0.972	1	12337	12337		8.7454	3.8484	1	7961700			11932	6798	8536	8607	11658	11658					-0.013154276995237524
ENRKAYFY	8	Unmodified	_ENRKAYFY_					0	0	0			REV__tr|U7STH8|U7STH8_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01352PE=3SV=1	REV__tr|U7STH8|U7STH8_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01352PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	546.6902465820312	2	545.769448	1089.52434	-0.41907	-0.00022872	-1.7554	-0.00095804	-2.1745	-0.0011868	545.7696098725927	51.937	1.1178	51.937	51.525	52.643	0					49	21	3	0	0	0	0.77515	1	18656	18656		12.532	0.89125	1	12490000	+		11933	28486	8537	8608	11659	11659					-0.01683714216574117
ENRLTYIFF	9	Unmodified	_ENRLTYIFF_					0	0	0			REV__OR6C68|p.S285F|3|0.25|ENSG00000205327|chr12:55493231-55493231|C/T|missense_variant	REV__OR6C68|p.S285F|3|0.25|ENSG00000205327|chr12:55493231-55493231|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	401.9449157714844	3	401.544996	1201.61316	-0.32901	-0.00013211	0.057449	2.3069E-05	-0.27157	-0.00010905	401.8795793596443	75.323	0.55363	75.323	75.11	75.664	0					22	10	3	0	0	0	0.31062	1	27496	27496		29.841	11.467	1	2141500	+		11934	27696	8538	8609	11660	11660					0.020417010230630694
ENRLTYIFF	9	Unmodified	_ENRLTYIFF_					0	0	0			REV__OR6C68|p.S285F|3|0.25|ENSG00000205327|chr12:55493231-55493231|C/T|missense_variant	REV__OR6C68|p.S285F|3|0.25|ENSG00000205327|chr12:55493231-55493231|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	401.544996	1201.61316	-0.32901	-0.00013211	0.057449	2.3069E-05	-0.27157	-0.00010905	401.8795793596443	75.323	0.55363	75.323	75.11	75.664	0	0.1041	-3.0084E-05	NaN	29.841	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2141500	+		11935	27696	8538	8609							0.020417010230630694
ENRRGEEWACC	11	Unmodified	_ENRRGEEWACC_					0	0	0			REV__ENST00000340022.6_2_7:91874891-91875065:-|nuORF	REV__ENST00000340022.6_2_7:91874891-91875065:-|nuORF	MSMS	A375_MHC_IP_R1	1	676.4019165039062	2	676.777153	1351.53975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.517	1	81.517	81.017	82.017	0								0	0	0	0.16265	1	29791	29791		4.897	0.56777	1		+		11936	23717	8539	8610	11661	11661					-0.12195538753303481
ENRTLIRRM	9	Unmodified	_ENRTLIRRM_					0	0	0			REV__TEP1|p.Y977Mfs*28|1|0.26|ENSG00000129566|chr14:20386128-20386128|A/-|frameshift_variant	REV__TEP1|p.Y977Mfs*28|1|0.26|ENSG00000129566|chr14:20386128-20386128|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	397.28009033203125	3	396.892513	1187.65571	-0.43104	-0.00017108	-1.6617	-0.00065953	-2.0928	-0.0008306	396.8913449784254	20.252	0.86152	20.863	20.349	21.21	0.61029					50	16	4	0	0	0	0.69884	1	6125	6125		7.1017	0.47135	1	17366000	+		11937	18498	8540	8611	11662	11662					0.06938772879675525
ENSDIYISNK	10	Unmodified	_ENSDIYISNK_					0	0	0			REV__tr|U7T1Q6|U7T1Q6_FUSNUCelldivisionproteinFtsQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00535PE=4SV=1	REV__tr|U7T1Q6|U7T1Q6_FUSNUCelldivisionproteinFtsQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00535PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	591.1561889648438	2	591.785492	1181.55643	-0.29047	-0.0001719	-2.7967	-0.001655	-3.0871	-0.0018269	592.2836954203974	40.795	0.30375	40.795	40.559	40.863	0					8	5	2	0	0	0	0.83355	1	13988	13988		17.113	1.8644	1	1075100	+		11938	28703	8541	8612	11663	11663					-0.02708391324108561
ENSFPSRFQPF	11	Unmodified	_ENSFPSRFQPF_					0	0	0		nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19;ENST00000478452.1_1_10:99221527-99222458:-|nuORF;ENST00000495415.5_1_10:99221527-99223714:-|nuORF	nc|ENSG00000155229|Q96T76-5|MMS19	nc|ENSG00000155229|Q96T76-5|MMS19	MSMS	A375_MHC_IP_R1	1	677.924560546875	2	678.322576	1354.6306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.893	1	34.893	34.393	35.393	0								0	0	0	0.15541	1	11549	11549		17.113	3.2068	1				11939	6132	8542	8613	11664	11664					-0.03253003441909641
ENSKRMQEL	9	Unmodified	_ENSKRMQEL_					0	0	0		nc|ENSG00000114670|Q8NG66-4|NEK11;ENSG00000114670|ENST00000383366|NEK11;nc|ENSG00000114670|Q8NG66-2|NEK11;nc|ENSG00000114670|Q8NG66-3|NEK11	nc|ENSG00000114670|Q8NG66-4|NEK11	nc|ENSG00000114670|Q8NG66-4|NEK11	MULTI-SECPEP	A375_MHC_IP_R2	2	567.1666259765625	2	567.78223	1133.54991	-0.56307	-0.0003197	-1.3366	-0.00075889	-1.8997	-0.0010786	567.7813712905507	34.666	0.45483	35.43	35.223	35.677	0.76338					14	8	2	0	0	0	0.71541	1	12540	12540		7.2892	0	1	1830800			11940	3237	8543	8614	11665	11665					-0.011526077564667503
ENSLAHQDNTK	11	Unmodified	_ENSLAHQDNTK_					0	0	0			REV__nc|ENSG00000132952|Q5W0Q7-2|USPL1	REV__nc|ENSG00000132952|Q5W0Q7-2|USPL1	MSMS	A375_MHC_IP_R2	2	628.7296142578125	2	628.796923	1255.57929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.161	1	93.9	93.4	94.4	0.73902								0	0	0	0.16176	1	35420	35420		9.544	1.3884	1		+		11941	18694	8544	8615	11666	11666					-0.038273722066151095
ENSLIASDW	9	Unmodified	_ENSLIASDW_					0	0	0			REV__HERC1|p.T1253I|1|0.38|ENSG00000103657|chr15:63718882-63718882|G/A|missense_variant	REV__HERC1|p.T1253I|1|0.38|ENSG00000103657|chr15:63718882-63718882|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1422119140625	2	517.743096	1033.47164	-1.0692	-0.00055356	0.35361	0.00018308	-0.71558	-0.00037049	517.7431724530138	57.481	0.5614	58.23	57.865	58.427	0.74894					21	10	3	0	0	0	0.35487	1	21728	21728		29.082	0	1	2514300	+		11942	26733	8545	8616	11667	11667					-0.04375717070047358
ENSLIQWVE	9	Unmodified	_ENSLIQWVE_					0	0	0		nc|ENSG00000100578|Q9BVV6-2|KIAA0586;nc|ENSG00000100578|Q9BVV6-4|KIAA0586;nc|ENSG00000100578|Q9BVV6|KIAA0586;ENSG00000100578|ENST00000652326|KIAA0586;ENST00000538571.6_1_14:58909433-59003756:+|nuORF;nc|ENSG00000100578|Q9BVV6-3|KIAA0586	nc|ENSG00000100578|Q9BVV6-2|KIAA0586	nc|ENSG00000100578|Q9BVV6-2|KIAA0586	MULTI-MSMS	A375_MHC_IP_R1	1	558.6717529296875	2	559.279846	1116.54514	-0.60662	-0.00033927	-0.21988	-0.00012297	-0.8265	-0.00046225	559.27955196777	33.13	0.55788	33.13	32.887	33.445	0					20	10	3	0	0	0	0.13797	1	10798	10798		43.858	0	1	9289000			11943	2195	8546	8617	11668	11668					-0.00847168627569772
ENSLRETW	8	Unmodified	_ENSLRETW_					0	0	0		nc|ENSG00000001497|Q9Y4W2-4|LAS1L;nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-3|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1482543945312	2	517.748713	1033.48287	-0.74315	-0.00038477	-0.27517	-0.00014247	-1.0183	-0.00052724	517.7486428250246	32.137	0.50769	32.874	32.654	33.162	0.73691					20	9	3	0	0	0	0.84294	1	11405	11405		30.637	8.8899	1	4769100			11944	845	8547	8618	11669	11669					-0.03252894975912568
ENSLYTCVR	9	Unmodified	_ENSLYTCVR_					0	0	0		ENST00000475185.5_1_18:20877812-20889646:-|nuORF	ENST00000475185.5_1_18:20877812-20889646:-|nuORF	ENST00000475185.5_1_18:20877812-20889646:-|nuORF	MSMS	A375_MHC_IP_R1	1	542.677001953125	2	542.758223	1083.50189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.204	1	33.204	32.704	33.704	0								0	0	0	0.092288	1	10813	10813		43.858	2.0187	1				11945	12416	8548	8619	11670	11670					-0.036516816765242766
ENSQEENSEP	10	Unmodified	_ENSQEENSEP_					0	0	0		nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L;ENST00000500626.2_1_1:155616425-155618422:-|nuORF	nc|ENSG00000116580|Q3T8J9-3|GON4L	nc|ENSG00000116580|Q3T8J9-3|GON4L	MULTI-SECPEP	A375_MHC_IP_R1	1	581.14990234375	2	581.728372	1161.44219	-0.22651	-0.00013177	-1.8226	-0.0010603	-2.0491	-0.001192	582.2272460713137	99.26	0.15141	99.26	99.168	99.319	0					4	2	2	0	0	0	0.90513	1	36479	36479		17.113	1.2657	1	538060			11946	3407	8549	8620	11671	11671					-0.1320732587682869
ENSRSGRCKP	10	Unmodified	_ENSRSGRCKP_					0	0	0		ENST00000597853.5_1_19:49559435-49560608:-|nuORF;ENST00000599795.5_2_19:49559435-49561553:-|nuORF	ENST00000597853.5_1_19:49559435-49560608:-|nuORF	ENST00000597853.5_1_19:49559435-49560608:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	567.6900634765625	2	567.277646	1132.54074	-0.464	-0.00026321	-0.84553	-0.00047965	-1.3095	-0.00074286	567.2771951324706	33.143	0.45544	33.143	32.887	33.342	0					20	8	4	0	0	0	0.54492	1	10858	10858		24.991	1.2012	1	6448700			11947	13850	8550	8621	11672	11672					-0.020229563221164426
ENSSEVVEH	9	Unmodified	_ENSSEVVEH_					0	0	0			REV__nc|ENSG00000214367|Q68CZ6-2|HAUS3	REV__nc|ENSG00000214367|Q68CZ6-2|HAUS3	MULTI-MSMS	A375_MHC_IP_R2	2	515.2208251953125	2	515.22781	1028.44107	-1.0301	-0.00053071	-0.43605	-0.00022466	-1.4661	-0.00075538	515.227597090041	34.175	1.1662	34.927	34.803	35.969	0.75225					36	22	2	0	0	0	0.63811	1	12632	12632		12.532	0.29089	1	5138500	+		11948	22652	8551	8622	11673	11673					-0.07201495455069562
ENSSPIPVISW	11	Unmodified	_ENSSPIPVISW_					0	0	0			REV__ENST00000587624.5_1_7:64601607-64646883:+|nuORF	REV__ENST00000587624.5_1_7:64601607-64646883:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	410.61181640625	3	410.211794	1227.61355	-0.2421	-9.9314E-05	0.86501	0.00035484	0.6229	0.00025552	410.2121019681795	38.882	0.46183	39.657	39.401	39.863	0.77451					20	8	3	0	0	0	0.53345	1	14341	14341		18.34	0	1	5625800	+		11949	26400	8552	8623	11674	11674					0.008850759522829321
ENSTNRVF	8	Unmodified	_ENSTNRVF_					0	0	0		nc|ENSG00000122882|O95905-2|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-3|ECD	nc|ENSG00000122882|O95905-2|ECD	nc|ENSG00000122882|O95905-2|ECD	MSMS	A375_MHC_IP_R2	2	483.67401123046875	2	483.735606	965.456658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.187	1	56.937	56.437	57.437	0.75015								0	0	0	0.16876	1	21232	21232		15.847	1.2655	1				11950	3813	8553	8624	11675	11675					-0.027451641473703603
ENSTNRVF	8	Unmodified	_ENSTNRVF_					0	0	0		nc|ENSG00000122882|O95905-2|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-3|ECD	nc|ENSG00000122882|O95905-2|ECD	nc|ENSG00000122882|O95905-2|ECD	MSMS	A375_MHC_IP_R2	2	483.6499938964844	2	483.735606	965.456658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.305	1	57.055	56.555	57.555	0.75015								0	0	0	0.16876	1	21281	21281		21.747	3.6117	1				11951	3813	8553	8624	11676	11676					-0.027451641473703603
ENSVNFKNIY	10	Unmodified	_ENSVNFKNIY_					0	0	0		XRCC6|p.K94E|1|0.14|ENSG00000196419|chr22:41636197-41636197|A/G|missense_variant	XRCC6|p.K94E|1|0.14|ENSG00000196419|chr22:41636197-41636197|A/G|missense_variant	XRCC6|p.K94E|1|0.14|ENSG00000196419|chr22:41636197-41636197|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	409.6155700683594	3	409.87166	1226.59315	-0.27403	-0.00011232	3.3866	0.0013881	3.1125	0.0012757	410.2073616029455	23.576	0.30335	24.206	23.979	24.283	0.63014					7	5	2	0	0	0	0.92832	1	7614	7614		5.4027	0	1	1847000			11952	30171	8554	8625	11677	11677					-0.011080947075015501
ENTEILGYL	9	Unmodified	_ENTEILGYL_					0	0	0		nc|ENSG00000145014|Q2T9K0-4|TMEM44;ENSG00000145014|ENST00000347147|TMEM44;nc|ENSG00000145014|Q2T9K0-7|TMEM44;nc|ENSG00000145014|Q2T9K0-6|TMEM44;nc|ENSG00000145014|Q2T9K0|TMEM44	nc|ENSG00000145014|Q2T9K0-4|TMEM44	nc|ENSG00000145014|Q2T9K0-4|TMEM44	MULTI-MSMS	A375_MHC_IP_R1	1	1051.929931640625	1	1051.53062	1050.52334	0.27615	0.00029038	-0.44922	-0.00047236	-0.17306	-0.00018198	1051.5298970988433	105.57	1.7334	105.57	105.25	106.98	0					78	33	3	0	0	0	0.32092	1	39129	39129		29.082	8.628	1	18476000			11953	5532	8555	8626	11678	11678					0.00010026623863268469
ENTEILGYL	9	Unmodified	_ENTEILGYL_					0	0	0		nc|ENSG00000145014|Q2T9K0-4|TMEM44;ENSG00000145014|ENST00000347147|TMEM44;nc|ENSG00000145014|Q2T9K0-7|TMEM44;nc|ENSG00000145014|Q2T9K0-6|TMEM44;nc|ENSG00000145014|Q2T9K0|TMEM44	nc|ENSG00000145014|Q2T9K0-4|TMEM44	nc|ENSG00000145014|Q2T9K0-4|TMEM44	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	1051.53062	1050.52334	0.27615	0.00029038	-0.44922	-0.00047236	-0.17306	-0.00018198	1051.5298970988433	105.57	1.7334	105.57	105.25	106.98	0	-0.0016541	0.00017443	NaN	29.082	78	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18476000			11954	5532	8555	8626							0.00010026623863268469
ENTEILGYL	9	Unmodified	_ENTEILGYL_					0	0	0		nc|ENSG00000145014|Q2T9K0-4|TMEM44;ENSG00000145014|ENST00000347147|TMEM44;nc|ENSG00000145014|Q2T9K0-7|TMEM44;nc|ENSG00000145014|Q2T9K0-6|TMEM44;nc|ENSG00000145014|Q2T9K0|TMEM44	nc|ENSG00000145014|Q2T9K0-4|TMEM44	nc|ENSG00000145014|Q2T9K0-4|TMEM44	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	1051.53062	1050.52334	0.11168	0.00011743	-0.73759	-0.0007756	-0.62591	-0.00065817	1051.5297174745967	104.81	1.7305	105.57	105.21	106.94	0.76308	0.0016541	-0.0001288	NaN	29.082	79	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21229000			11955	5532	8555	8626							0.00010026623863268469
ENTETHRGE	9	Unmodified	_ENTETHRGE_					0	0	0		L1PA12_dup1459|chr14:24645129-24646061:+|2.3378894784149136|0.043402481506214|5.75|453.0|19|2|sense	L1PA12_dup1459|chr14:24645129-24646061:+|2.3378894784149136|0.043402481506214|5.75|453.0|19|2|sense	L1PA12_dup1459|chr14:24645129-24646061:+|2.3378894784149136|0.043402481506214|5.75|453.0|19|2|sense	MULTI-MSMS	A375_MHC_IP_R1	1	358.5599365234375	3	358.159981	1071.45811	0.29084	0.00010417	-2.5477	-0.00091248	-2.2569	-0.00080832	358.1596827744641	109.34	0.45815	109.34	109.07	109.52	0					16	7	3	0	0	0	0.69674	1	40139	40139		4.5289	1.2092	1	1426400			11956	14265	8556	8627	11679	11679					-0.07475574849263467
ENTGFSNDY	9	Unmodified	_ENTGFSNDY_					0	0	0		tr|U7SL02|U7SL02_FUSNUSsuA/THI5-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02015PE=4SV=1	tr|U7SL02|U7SL02_FUSNUSsuA/THI5-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02015PE=4SV=1	tr|U7SL02|U7SL02_FUSNUSsuA/THI5-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02015PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	523.6685180664062	2	523.706711	1045.39887	-0.9389	-0.00049171	0.75517	0.00039549	-0.18372	-9.6216E-05	523.7070111286396	59.104	0.55801	59.851	59.489	60.047	0.74714					16	10	2	0	0	0	0.70307	1	22397	22397		6.7232	0.96273	1	1706200			11957	29489	8557	8628	11680	11680					-0.12201470863465147
ENTGFSNDY	9	Unmodified	_ENTGFSNDY_					0	0	0		tr|U7SL02|U7SL02_FUSNUSsuA/THI5-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02015PE=4SV=1	tr|U7SL02|U7SL02_FUSNUSsuA/THI5-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02015PE=4SV=1	tr|U7SL02|U7SL02_FUSNUSsuA/THI5-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02015PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	523.706711	1045.39887	-0.46201	-0.00024196	2.0477	0.0010724	1.5857	0.00083043	523.7073909959429	59.726	0.50766	59.726	59.448	59.955	0	-0.06238	0.0010301	NaN	6.7232	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1465400			11958	29489	8557	8628							-0.12201470863465147
ENTGFSNDY	9	Unmodified	_ENTGFSNDY_					0	0	0		tr|U7SL02|U7SL02_FUSNUSsuA/THI5-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02015PE=4SV=1	tr|U7SL02|U7SL02_FUSNUSsuA/THI5-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02015PE=4SV=1	tr|U7SL02|U7SL02_FUSNUSsuA/THI5-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02015PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	523.706711	1045.39887	-0.9389	-0.00049171	0.75517	0.00039549	-0.18372	-9.6216E-05	523.7070111286396	59.104	0.55801	59.851	59.489	60.047	0.74714	0.06238	-0.0003237	NaN	6.7232	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1706200			11959	29489	8557	8628							-0.12201470863465147
ENTKFLREQ	9	Unmodified	_ENTKFLREQ_					0	0	0			REV__ENST00000370318.5_2_6:74135247-74138440:-|nuORF	REV__ENST00000370318.5_2_6:74135247-74138440:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	388.29254150390625	3	388.871772	1163.59349	0.57901	0.00022516	-0.084875	-3.3006E-05	0.49414	0.00019216	389.20599081236776	48.401	0.35421	48.401	48.274	48.629	0					9	6	2	0	0	0	0.74597	1	17102	17102		16.566	14.067	1	1274900	+		11960	24027	8558	8629	11681	11681					0.018233250123330436
ENTLEVYVP	9	Unmodified	_ENTLEVYVP_					0	0	0			REV__ENST00000536851.1_1_12:21613985-21615680:+|nuORF	REV__ENST00000536851.1_1_12:21613985-21615680:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	532.1819458007812	2	532.268947	1062.52334	-0.67751	-0.00036062	-0.59434	-0.00031635	-1.2719	-0.00067697	532.2688260655657	77.142	0.40673	77.142	76.93	77.336	0					10	7	2	0	0	0	0.65246	1	28138	28138		6.7232	0	1	780600	+		11961	18158	8559	8630	11682	11682					-0.005419733761300449
ENTLLEWM	8	Oxidation (M)	_ENTLLEWM(Oxidation (M))_		ENTLLEWM(1)		ENTLLEWM(57)	0	0	1			REV__ENSG00000166685|ENST00000299886|COG1	REV__ENSG00000166685|ENST00000299886|COG1	MSMS	A375_MHC_IP_R1	1	526.1951904296875	2	526.241875	1050.4692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.798	1	68.798	68.298	69.298	0								0	0	0	0.12351	1	24956	24956		57.471	9.1255	1		+		11962	20692	8560	8631	11683	11683		483			-0.05401888799360677
ENTPNSQVLYF	11	Unmodified	_ENTPNSQVLYF_					0	0	0		ENSG00000124215|ENST00000348616|CDH26;nc|ENSG00000124215|Q8IXH8-1|CDH26	ENSG00000124215|ENST00000348616|CDH26	ENSG00000124215|ENST00000348616|CDH26	MULTI-SECPEP	A375_MHC_IP_R2	2	655.7341918945312	2	656.314417	1310.61428	-1.0002	-0.00065642	0.17079	0.00011209	-0.82937	-0.00054433	656.3146088717067	66.583	0.8167	67.32	66.882	67.698	0.73631					22	15	2	0	0	0	0.86796	1	25201	25201		20.415	3.3016	1	1548800			11963	3886	8561	8632	11684	11684					-0.028601293986639575
ENTRKLHIT	9	Unmodified	_ENTRKLHIT_					0	0	0		ENST00000332070.7_1_X:133527609-133547529:+|nuORF;ENST00000370799.5_1_X:133527609-133547529:+|nuORF	ENST00000332070.7_1_X:133527609-133547529:+|nuORF	ENST00000332070.7_1_X:133527609-133547529:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	556.1981201171875	2	556.314554	1110.61456	-1.1424	-0.00063555	0.069926	3.8901E-05	-1.0725	-0.00059665	556.3143453989239	36.59	0.40688	37.361	37.157	37.564	0.7709					13	7	2	0	0	0	0.57304	1	13406	13406		25.399	11.493	1	2981300			11964	10774	8562	8633	11685	11685					0.0636733511184957
ENVASVRFY	9	Unmodified	_ENVASVRFY_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R1	1	542.2318725585938	2	542.774731	1083.53491	-0.32622	-0.00017706	0.052606	2.8553E-05	-0.27361	-0.00014851	542.7746332034766	70.106	0.55847	70.106	69.782	70.341	0					14	8	2	0	0	0	0.55471	1	25429	25429		17.113	0	1	3135700	+		11965	19932	8563	8634	11686	11686					-0.003517315621365924
ENVDITLKG	9	Unmodified	_ENVDITLKG_					0	0	0		ENST00000511075.5_1_4:39457912-39460059:-|nuORF;ENSG00000163682|ENST00000295955|RPL9;ENST00000514842.5_1_4:39459094-39460113:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	988.7588500976562	1	988.530952	987.523675	0.11174	0.00011046	-3.2419	-0.0032047	-3.1301	-0.0030942	988.5290495693844	134.66	0.2041	134.8	134.65	134.85	0.13901					6	3	2	0	0	0	0.46045	1	52950	52950		22.736	4.5899	1	3902600			11966	6707	8564	8635	11687	11687					0.029414463437205995
ENVFERFNDN	10	Unmodified	_ENVFERFNDN_					0	0	0			REV__ENST00000564124.5_1_16:48580029-48653834:-|nuORF	REV__ENST00000564124.5_1_16:48580029-48653834:-|nuORF	MSMS	A375_MHC_IP_R2	2	642.3521728515625	2	642.286191	1282.55783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.685	1	76.426	75.926	76.926	0.74052								0	0	0	0.15465	1	28730	28730		5.7319	0	1		+		11967	17240	8565	8636	11688	11688					-0.07214757235306024
ENVKTIGHMI	10	Unmodified	_ENVKTIGHMI_					0	0	0		B4GALT6|p.H146Sfs*8|1|0.12|ENSG00000118276|chr18:31645391-31645392|-/C|frameshift_variant;nc|ENSG00000118276|Q9UBX8-2|B4GALT6;ENSG00000118276|ENST00000306851|B4GALT6	B4GALT6|p.H146Sfs*8|1|0.12|ENSG00000118276|chr18:31645391-31645392|-/C|frameshift_variant	B4GALT6|p.H146Sfs*8|1|0.12|ENSG00000118276|chr18:31645391-31645392|-/C|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	570.653564453125	2	571.305341	1140.59613	-0.28083	-0.00016044	0.17925	0.00010241	-0.10158	-5.8031E-05	571.3055079259918	76.433	0.45807	77.173	76.843	77.301	0.74052					11	8	2	0	0	0	0.9269	1	28923	28923		6.7232	0	1	859660			11968	223	8566	8637	11689	11689					0.03145457145660657
ENVLPREPL	9	Unmodified	_ENVLPREPL_					0	0	0		nc|ENSG00000142655|O75381-2|PEX14;ENSG00000142655|ENST00000356607|PEX14	nc|ENSG00000142655|O75381-2|PEX14	nc|ENSG00000142655|O75381-2|PEX14	MULTI-SECPEP	A375_MHC_IP_R2	2	355.9447937011719	3	356.201229	1065.58186	-0.098156	-3.4963E-05	-0.33537	-0.00011946	-0.43352	-0.00015442	356.2011126134405	44.169	0.30359	44.938	44.782	45.086	0.76909					8	5	2	0	0	0	0.78753	1	16463	16463		8.1555	1.5252	1	1021300			11969	5322	8567	8638	11690	11690					0.051691279890064834
ENVNEAKSY	9	Unmodified	_ENVNEAKSY_					0	0	0		CON__Q3T052	CON__Q3T052	CON__Q3T052	MULTI-SECPEP	A375_MHC_IP_R1	1	527.1953735351562	2	527.246003	1052.47745	-0.33765	-0.00017803	3.2204	0.0016979	2.8827	0.0015199	527.75074495238	35.465	0.25353	35.465	35.269	35.522	0					6	4	2	0	0	0	0.74412	1	11744	11744		6.2058	1.4498	1	800560		+	11970	620	8568	8639	11691	11691					-0.046686185583666884
ENVQADPEN	9	Unmodified	_ENVQADPEN_					0	0	0		nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000106278|P23471-3|PTPRZ1;PTPRZ1|p.N1301Tfs*23|1|0.25|ENSG00000106278|chr7:122012947-122012947|A/-|frameshift_variant;PTPRZ1|p.P315L|1|0.18|ENSG00000106278|chr7:121996397-121996397|C/T|missense_variant	nc|ENSG00000106278|P23471-2|PTPRZ1	nc|ENSG00000106278|P23471-2|PTPRZ1	MSMS	A375_MHC_IP_R2	2	508.1640319824219	2	508.219985	1014.42542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.753	1	49.511	49.011	50.011	0.75737								0	0	0	0.15331	1	18310	18310		16.149	2.6412	1				11971	2679	8569	8640	11692	11692					-0.08121781972147346
ENVSRGEDL	9	Unmodified	_ENVSRGEDL_					0	0	0			REV__nc|ENSG00000131503|Q8IWZ3-5|ANKHD1	REV__nc|ENSG00000131503|Q8IWZ3-5|ANKHD1	MSMS	A375_MHC_IP_R1	1	509.6489562988281	2	509.743628	1017.4727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.52	1	72.52	72.02	73.02	0								0	0	0	0.14851	1	26384	26384		24.021	3.5669	1		+		11972	18610	8570	8641	11693	11693					-0.03533502701134239
ENVTLLNPDP	10	Unmodified	_ENVTLLNPDP_					0	0	0		nc|ENSG00000154133|Q8WZ75-3|ROBO4;ROBO4|p.E787Rfs*7|1|0.09|ENSG00000154133|chr11:124887053-124887053|C/-|frameshift_variant;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4	nc|ENSG00000154133|Q8WZ75-3|ROBO4	nc|ENSG00000154133|Q8WZ75-3|ROBO4	MULTI-SECPEP	A375_MHC_IP_R1	1	556.1738891601562	2	556.285128	1110.5557	-0.7557	-0.00042038	1.0639	0.00059182	0.30819	0.00017144	556.2860653708452	85.241	0.40646	85.241	84.955	85.362	0					16	7	3	0	0	0	0.75488	1	31179	31179		29.841	4.4413	1	1502000			11973	6061	8571	8642	11694	11694					0.0048481402686775255
ENVTPKTNSL	10	Unmodified	_ENVTPKTNSL_					0	0	0			REV__ENSG00000119541|ENST00000238497|VPS4B	REV__ENSG00000119541|ENST00000238497|VPS4B	MULTI-MSMS	A375_MHC_IP_R2	2	553.22412109375	2	551.790578	1101.5666	-0.67292	-0.00037131	4.0856	0.0022544	3.4126	0.0018831	552.2949844299826	109.54	0.8625	110.29	109.67	110.54	0.74683					28	10	4	0	0	0	0.63336	1	41332	41332		18.373	0.22675	1	1497600	+		11974	18077	8572	8643	11695	11695					0.01988216401127829
ENVVGELRL	9	Unmodified	_ENVVGELRL_					0	0	0		tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	515.19091796875	2	514.790381	1027.56621	-0.35571	-0.00018312	-0.13343	-6.8691E-05	-0.48915	-0.00025181	514.7902797894101	78.53	1.5231	78.53	77.895	79.418	0					63	29	4	0	0	0	0.46045	1	28841	28841		17.113	0	1	86067000			11975	29458	8573	8644	11696	11696					0.05352841471949432
ENWGGPAE	8	Unmodified	_ENWGGPAE_					0	0	0		nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MSMS	A375_MHC_IP_R1	1	430.1400146484375	2	430.182675	858.350796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.363	1	24.363	23.863	24.863	0								0	0	0	0.16876	1	6900	6900		4.756	0	1				11976	2120	8574	8645	11697	11697					-0.08404499992855108
ENWKQGKRWRI	11	Unmodified	_ENWKQGKRWRI_					0	0	0		ENST00000396253.7_1_11:18327777-18327885:-|nuORF	ENST00000396253.7_1_11:18327777-18327885:-|nuORF	ENST00000396253.7_1_11:18327777-18327885:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	500.15045166015625	3	500.944265	1499.81096	-0.5514	-0.00027622	-1.032	-0.000517	-1.5834	-0.00079322	501.2777782254449	45.959	0.30264	46.724	46.503	46.805	0.76518					9	5	2	0	0	0	0.99676	1	17126	17126		0.40827	0	1	1872300			11977	11487	8575	8646	11698	11698					0.08105140005591238
ENWLNEDTPCQ	11	Unmodified	_ENWLNEDTPCQ_					0	0	0			REV__ENST00000556523.1_1_14:24910114-24911620:-|nuORF	REV__ENST00000556523.1_1_14:24910114-24911620:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	450.9783630371094	3	450.18732	1347.54013	-0.5993	-0.0002698	-0.96539	-0.00043461	-1.5647	-0.0007044	450.1872856336185	60.977	1.4674	61.722	61.006	62.473	0.74503					32	28	2	0	0	0	0.99482	1	22964	22964		3.8459	1.4111	1	1974400	+		11978	26108	8576	8647	11699	11699					-0.1197384055249131
ENWVRRSI	8	Unmodified	_ENWVRRSI_					0	0	0			REV__nc|ENSG00000069702|Q03167-2|TGFBR3	REV__nc|ENSG00000069702|Q03167-2|TGFBR3	MULTI-SECPEP	A375_MHC_IP_R2	2	530.6317749023438	2	530.28834	1058.56213	-0.94902	-0.00050326	-1.7508	-0.00092844	-2.6998	-0.0014317	530.2872954547654	52.086	0.45776	52.838	52.626	53.083	0.75225					11	8	2	0	0	0	0.92636	1	19723	19723		23.148	0.41214	1	1963200	+		11979	16559	8577	8648	11700	11700					0.0351879676891258
ENYGIIDVPN	10	Unmodified	_ENYGIIDVPN_					0	0	0		tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	567.6769409179688	2	567.277303	1132.54005	-0.464	-0.00026321	-0.24135	-0.00013691	-0.70534	-0.00040013	567.2771951324706	33.143	0.45544	33.143	32.887	33.342	0					20	8	4	0	0	0	0.27133	1	10777	10777		41.956	41.956	1	6448700			11980	29814	8578	8649	11701	11701					-0.020914724902013404
ENYKKLWEN	9	Unmodified	_ENYKKLWEN_					0	0	0		tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	408.9661865234375	3	408.540022	1222.59824	-0.27175	-0.00011102	-0.66632	-0.00027222	-0.93807	-0.00038324	408.5398224092677	23.549	0.20353	24.179	24.079	24.283	0.63014					6	3	2	0	0	0	0.67483	1	7571	7571		10.151	1.7063	1	1033200			11981	29597	8579	8650	11702	11702					-0.004157908449087699
ENYRIMSYFK	10	Unmodified	_ENYRIMSYFK_					0	0	0		nc|ENSG00000166483|P30291-2|WEE1;ENSG00000166483|ENST00000450114|WEE1	nc|ENSG00000166483|P30291-2|WEE1	nc|ENSG00000166483|P30291-2|WEE1	MULTI-MSMS	A375_MHC_IP_R1	1	675.969482421875	2	675.82918	1349.64381	-0.3763	-0.00025431	-3.0459	-0.0020585	-3.4222	-0.0023128	675.8265170762801	108.21	0.50785	108.21	108.05	108.56	0					11	9	2	0	0	0	0.71047	1	39673	39673		7.609	0.88579	1	921500			11982	7081	8580	8651	11703	11703					-0.017028886541766042
ENYYKDFTIY	10	Unmodified	_ENYYKDFTIY_					0	0	0		nc|ENSG00000173218|Q8TAA9-2|VANGL1;ENSG00000173218|ENST00000355485|VANGL1	nc|ENSG00000173218|Q8TAA9-2|VANGL1	nc|ENSG00000173218|Q8TAA9-2|VANGL1	MSMS	A375_MHC_IP_R2	2	678.2044677734375	2	678.311343	1354.60813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.14	1	66.879	66.379	67.379	0.73811								0	0	0	0.15435	1	25068	25068		6.7232	0.51738	1				11983	7778	8581	8652	11704	11704					-0.05498647630179221
EPANRDGAGAQ	11	Unmodified	_EPANRDGAGAQ_					0	0	0		ENST00000560255.2_1_15:80215681-80215813:+|nuORF	ENST00000560255.2_1_15:80215681-80215813:+|nuORF	ENST00000560255.2_1_15:80215681-80215813:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	544.1549072265625	2	543.252151	1084.48975	-0.61856	-0.00033603	1.3198	0.000717	0.70128	0.00038097	543.7551438307703	46.414	1.5768	46.414	45.89	47.467	0					82	30	4	0	0	0	0.59391	1	16289	16289		23.79	1.0535	1	41742000			11984	13489	8582	8653	11705	11705					-0.04911582095337508
EPCEQCDM	8	Unmodified	_EPCEQCDM_					0	0	0			REV__ENST00000490936.5_1_X:153577219-153578780:-|nuORF	REV__ENST00000490936.5_1_X:153577219-153578780:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	953.7481079101562	1	954.300165	953.292889	0.074597	7.1188E-05	2.8858	0.0027539	2.9604	0.0028251	954.3014995426262	125.53	0.25262	125.53	125.45	125.7	0					7	4	2	0	0	0	0.972	1	47749	47749		5.7604	1.0044	1	20736000	+		11985	22238	8583	8654	11706	11706					-0.18562589296459464
EPCRGAAPA	9	Unmodified	_EPCRGAAPA_					0	0	0		ENST00000592634.5_1_19:5895457-5895973:-|nuORF	ENST00000592634.5_1_19:5895457-5895973:-|nuORF	ENST00000592634.5_1_19:5895457-5895973:-|nuORF	MSMS	A375_MHC_IP_R2	2	436.1308898925781	2	436.20817	870.401786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.036	1	90.768	90.268	91.268	0.7318								0	0	0	0.1535	1	34258	34258		15.847	3.3156	1				11986	13815	8584	8655	11707	11707					-0.038598742196541025
EPDEQRSRSK	10	Unmodified	_EPDEQRSRSK_					0	0	0			REV__ENSG00000130699|ENST00000252996|TAF4	REV__ENSG00000130699|ENST00000252996|TAF4	MULTI-MSMS	A375_MHC_IP_R1	1	616.7039794921875	2	616.304915	1230.59528	-0.30162	-0.00018589	-0.82465	-0.00050824	-1.1263	-0.00069413	616.3045266395746	50.889	1.3193	50.889	50.459	51.778	0					63	25	4	0	0	0	0.70012	1	17991	17991		12.241	0.74595	1	22272000	+		11987	18554	8585	8656	11708	11708					-0.010796659697234645
EPDETEETL	9	Unmodified	_EPDETEETL_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MULTI-SECPEP	A375_MHC_IP_R2	2	531.33056640625	2	531.727309	1061.44006	-0.72938	-0.00038783	0.80033	0.00042556	0.070951	3.7727E-05	531.7276741723992	32.773	0.40582	33.51	33.265	33.671	0.73691					13	7	2	0	0	0	0.75466	1	11629	11629		1.8442	0	1	2126400	+		11988	22397	8586	8657	11709	11709					-0.08819754614660269
EPDGGFPGLKW	11	Unmodified	_EPDGGFPGLKW_					0	0	0		nc|ENSG00000186185|Q86Y91-6|KIF18B;ENSG00000186185|ENST00000593135|KIF18B	nc|ENSG00000186185|Q86Y91-6|KIF18B	nc|ENSG00000186185|Q86Y91-6|KIF18B	MULTI-SECPEP	A375_MHC_IP_R1	1	401.33380126953125	3	401.532868	1201.57677	-0.1868	-7.5004E-05	-1.0278	-0.00041271	-1.2146	-0.00048771	401.5317637185881	22.995	0.35171	22.995	22.773	23.125	0					9	6	2	0	0	0	0.99676	1	6233	6233		0.40827	0	1	583800			11989	8726	8587	8658	11710	11710					-0.015951758736491684
EPDHTCKK	8	Unmodified	_EPDHTCKK_					0	0	0		ENSG00000258436|ENST00000696784|RNASE12	ENSG00000258436|ENST00000696784|RNASE12	ENSG00000258436|ENST00000696784|RNASE12	MSMS	A375_MHC_IP_R2	2	479.17333984375	2	479.226559	956.438566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.76	1	143.78	143.28	144.28	0.024414								0	0	0	0.16876	1	56172	56172		5.2307	0	1				11990	9918	8588	8659	11711	11711					-0.041396223937454124
EPDKTLLRV	9	Unmodified	_EPDKTLLRV_					0	0	0			REV__nc|ENSG00000140853|Q86WI3-4|NLRC5	REV__nc|ENSG00000140853|Q86WI3-4|NLRC5	MSMS	A375_MHC_IP_R1	1	357.4490051269531	3	357.544996	1069.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.856	1	67.856	67.356	68.356	0								0	0	0	0.15486	1	24594	24594		4.5289	1.2092	1		+		11991	19233	8589	8660	11712	11712					0.08113701023103204
EPDPGMSGW	9	Unmodified	_EPDPGMSGW_					0	0	0		nc|ENSG00000136732|P04921-2|GYPC;nc|ENSG00000136732|P04921-3|GYPC;ENSG00000136732|ENST00000259254|GYPC	nc|ENSG00000136732|P04921-2|GYPC	nc|ENSG00000136732|P04921-2|GYPC	MULTI-SECPEP	A375_MHC_IP_R1	1	487.6689758300781	2	488.197467	974.380382	-0.42223	-0.00020613	1.847	0.00090171	1.4248	0.00069558	488.201217389151	39.579	0.5564	39.579	39.289	39.845	0					22	10	3	0	0	0	0.75466	1	13523	13523		12.532	5.2423	1	3792500			11992	4811	8590	8661	11713	11713					-0.1078330403901191
EPDPPLGYTSL	11	Unmodified	_EPDPPLGYTSL_					0	0	0		ZDHHC5|p.P500L|1|0.33|ENSG00000156599|chr11:57698935-57698935|C/T|missense_variant	ZDHHC5|p.P500L|1|0.33|ENSG00000156599|chr11:57698935-57698935|C/T|missense_variant	ZDHHC5|p.P500L|1|0.33|ENSG00000156599|chr11:57698935-57698935|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	595.1915893554688	2	594.792786	1187.57102	-0.5207	-0.00030971	-0.63438	-0.00037732	-1.1551	-0.00068703	594.7923335661221	73.602	0.56116	74.337	74.041	74.602	0.7354					19	10	2	0	0	0	0.9754	1	27903	27903		8.1555	8.1555	1	9682600			11993	30196	8591	8662	11714	11714					-0.015263191759459005
EPDQEDSD	8	Unmodified	_EPDQEDSD_					0	0	0			REV__KIR3DL1|p.E395K|1|0.05|ENSG00000167633|chr19:54830123-54830123|G/A|missense_variant	REV__KIR3DL1|p.E395K|1|0.05|ENSG00000167633|chr19:54830123-54830123|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	468.09063720703125	2	467.667251	933.31995	-0.42865	-0.00020046	-0.7485	-0.00035005	-1.1771	-0.00055051	467.6669475073264	39.531	0.55632	39.531	39.34	39.896	0					13	10	2	0	0	0	0.77028	1	13500	13500		14.838	3.198	1	1400000	+		11994	20779	8592	8663	11715	11715					-0.1493774288841223
EPDRYFYL	8	Unmodified	_EPDRYFYL_					0	0	0			REV__ENST00000416648.1_1_3:183605526-183606234:+|nuORF	REV__ENST00000416648.1_1_3:183605526-183606234:+|nuORF	MSMS	A375_MHC_IP_R1	1	551.7657470703125	2	551.763832	1101.51311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.562	1	98.562	98.062	99.062	0								0	0	0	0.16876	1	36212	36212		8.5933	1.8701	1		+		11995	20821	8593	8664	11716	11716					-0.03358536310724958
EPDSPPRLHF	10	Unmodified	_EPDSPPRLHF_					0	0	0			REV__nc|ENSG00000128923|Q8NBR6-2|MINDY2	REV__nc|ENSG00000128923|Q8NBR6-2|MINDY2	MULTI-SECPEP	A375_MHC_IP_R1	1	399.2676086425781	3	398.86825	1193.58292	-0.15037	-5.9976E-05	-0.78234	-0.00031205	-0.9327	-0.00037203	398.8679844881455	33.828	0.65813	33.828	33.445	34.103	0					23	12	3	0	0	0	0.9269	1	11076	11076		6.1918	0.78914	1	4568000	+		11996	18476	8594	8665	11717	11717					-0.006126576421138452
EPDVATQSTLY	11	Unmodified	_EPDVATQSTLY_					0	0	0			REV__NPAP1|p.H564Y|1|0.29|ENSG00000185823|chr15:24677557-24677557|C/T|missense_variant	REV__NPAP1|p.H564Y|1|0.29|ENSG00000185823|chr15:24677557-24677557|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	612.6926879882812	2	612.29315	1222.57175	-0.64959	-0.00039774	0.37331	0.00022858	-0.27628	-0.00016916	612.2933187033367	66.58	0.66438	67.316	66.983	67.648	0.73631					29	12	3	0	0	0	0.58862	1	25188	25188		38.615	12.347	1	6068100	+		11997	27623	8595	8666	11718	11718					-0.030635245268967992
EPDVTESTFPD	11	Unmodified	_EPDVTESTFPD_					0	0	0			REV__ENST00000598597.6_1_19:15465728-15479935:-|nuORF	REV__ENST00000598597.6_1_19:15465728-15479935:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	619.1668090820312	2	618.766965	1235.51938	-0.29908	-0.00018506	0.10575	6.5432E-05	-0.19334	-0.00011963	618.7669828194091	50.075	0.76783	50.075	49.793	50.561	0					34	14	3	0	0	0	0.60747	1	17711	17711		22.736	1.1993	1	7420700	+		11998	17358	8596	8667	11719	11719					-0.08896107660507369
EPDVYFWFRRT	11	Unmodified	_EPDVYFWFRRT_					0	0	0			REV__ENST00000263331.9_1_2:113299748-113300117:+|nuORF	REV__ENST00000263331.9_1_2:113299748-113300117:+|nuORF	MSMS	A375_MHC_IP_R1	1	758.5590209960938	2	758.372601	1514.73065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.56	1	125.56	125.06	126.06	0								0	0	0	0.16249	1	47831	47831		5.7319	2.4505	1		+		11999	23222	8597	8668	11720	11720					-0.006127661081336555
EPDWNDEEWDE	11	Unmodified	_EPDWNDEEWDE_					0	0	0			REV__ENSG00000182459|ENST00000333437|TEX19	REV__ENSG00000182459|ENST00000333437|TEX19	MSMS	A375_MHC_IP_R1	1	732.2699584960938	2	732.265318	1462.51608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.73	1	107.73	107.23	108.23	0								0	0	0	0.16302	1	39527	39527		2.9952	1.6657	1		+		12000	21689	8598	8669	11721	11721					-0.19667402505183418
EPECLRGTEY	10	Unmodified	_EPECLRGTEY_					0	0	0			REV__nc|ENSG00000100722|Q6PJT7-3|ZC3H14	REV__nc|ENSG00000100722|Q6PJT7-3|ZC3H14	MSMS	A375_MHC_IP_R1	1	598.7031860351562	2	598.766245	1195.51794	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.638	1	83.638	83.138	84.138	0								0	0	0	0.14862	1	30609	30609		20.454	7.9221	1		+		12001	27145	8599	8670	11722	11722					-0.07200020230266091
EPEEEKRN	8	Unmodified	_EPEEEKRN_					0	0	0			REV__nc|ENSG00000229809|P0C7X2-5|ZNF688	REV__nc|ENSG00000229809|P0C7X2-5|ZNF688	MULTI-SECPEP	A375_MHC_IP_R1	1	1030.677001953125	1	1030.47998	1029.4727	0.56254	0.00057969	-3.3293	-0.0034308	-2.7668	-0.0028511	1031.4808539272776	115.4	0.51011	115.4	115.17	115.68	0					11	9	2	0	0	0	0.91495	1	42334	42334		18.135	0	1	8092100	+		12002	22740	8600	8671	11723	11723					-0.0408550270115029
EPEEKGEPSSH	11	Unmodified	_EPEEKGEPSSH_					0	0	0			REV__ENST00000472650.1_1_2:219136156-219182765:+|nuORF	REV__ENST00000472650.1_1_2:219136156-219182765:+|nuORF	MSMS	A375_MHC_IP_R2	2	613.5643310546875	2	613.270207	1224.52586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.28	1	116.94	116.44	117.44	0.65962								0	0	0	0.16108	1	43890	43890		13.042	4.2971	1		+		12003	18432	8601	8672	11724	11724					-0.07742169709149493
EPELQKNIT	9	Unmodified	_EPELQKNIT_					0	0	0			REV__nc|ENSG00000170471|Q86X10-4|RALGAPB	REV__nc|ENSG00000170471|Q86X10-4|RALGAPB	MULTI-SECPEP	A375_MHC_IP_R2	2	358.2610778808594	3	357.860873	1070.56079	-0.40166	-0.00014374	0.67805	0.00024265	0.27639	9.891E-05	357.86115114905994	49.111	0.40644	49.868	49.639	50.046	0.75737					10	7	2	0	0	0	0.78348	1	18507	18507		0	0	1	2588700	+		12004	27352	8602	8673	11725	11725					0.028331178894632103
EPEMLWVTGPV	11	Unmodified	_EPEMLWVTGPV_					0	0	0		nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MSMS	A375_MHC_IP_R2	2	629.1702270507812	2	629.312832	1256.61111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.593	1	83.335	82.835	83.835	0.74293								0	0	0	0.15694	1	31375	31375		16.149	7.9936	1				12005	5339	8603	8674	11726	11726					-0.006930957770237001
EPENIREKFFR	11	Unmodified	_EPENIREKFFR_					0	0	0		ZBED9|p.M222I|1|0.16|ENSG00000232040|chr6:28576039-28576039|C/T|missense_variant	ZBED9|p.M222I|1|0.16|ENSG00000232040|chr6:28576039-28576039|C/T|missense_variant	ZBED9|p.M222I|1|0.16|ENSG00000232040|chr6:28576039-28576039|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	733.2824096679688	2	732.883333	1463.75211	-0.80495	-0.00058994	-0.48929	-0.0003586	-1.2942	-0.00094853	732.8828782975602	96.14	0.66045	96.89	96.602	97.262	0.75044					35	12	4	0	0	0	0.72649	1	36485	36485		12.241	4.0851	1	8435100			12006	30180	8604	8675	11727	11727					0.038786189205893606
EPESKDEDEI	10	Unmodified	_EPESKDEDEI_					0	0	0			REV__ENSG00000117222|ENST00000264515|RBBP5	REV__ENSG00000117222|ENST00000264515|RBBP5	MSMS	A375_MHC_IP_R2	2	595.582763671875	2	595.756598	1189.49864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.98	1	124.31	123.81	124.81	0.32969								0	0	0	0.15435	1	47801	47801		6.7232	0	1		+		12007	17998	8605	8676	11728	11728					-0.08852698040163887
EPEVEEEME	9	Unmodified	_EPEVEEEME_					0	0	0		DPY19L2|p.I438Efs*6|1|0.27|ENSG00000177990|chr12:63600347-63600354|AAATGATT/-|frameshift_variant;ENSG00000177990|ENST00000324472|DPY19L2	DPY19L2|p.I438Efs*6|1|0.27|ENSG00000177990|chr12:63600347-63600354|AAATGATT/-|frameshift_variant	DPY19L2|p.I438Efs*6|1|0.27|ENSG00000177990|chr12:63600347-63600354|AAATGATT/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	560.7901000976562	2	560.721169	1119.42779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.651	1	96.402	95.902	96.902	0.75045								0	0	0	0.15486	1	36330	36330		7.2892	2.0586	1				12008	793	8606	8677	11729	11729					-0.1271511434936201
EPFDCGCD	8	Unmodified	_EPFDCGCD_					0	0	0		PRUNE2|p.I2429Mfs*8|1|0.09|ENSG00000106772|chr9:76704987-76704988|-/C|frameshift_variant;nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	PRUNE2|p.I2429Mfs*8|1|0.09|ENSG00000106772|chr9:76704987-76704988|-/C|frameshift_variant	PRUNE2|p.I2429Mfs*8|1|0.09|ENSG00000106772|chr9:76704987-76704988|-/C|frameshift_variant	MSMS	A375_MHC_IP_R1	1	443.15081787109375	2	443.141304	884.268054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.327	1	27.327	26.827	27.827	0								0	0	0	0.16876	1	8271	8271		0.79363	0	1				12009	2711	8607	8678	11730	11730					-0.17870901107528425
EPGDFRHWNEW	11	Unmodified	_EPGDFRHWNEW_					0	0	0		ENSG00000100122|ENST00000647684|CRYBB1	ENSG00000100122|ENST00000647684|CRYBB1	ENSG00000100122|ENST00000647684|CRYBB1	MSMS	A375_MHC_IP_R2	2	736.8316040039062	2	736.820732	1471.62691	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.33	1	101.09	100.59	101.59	0.76278								0	0	0	0.16302	1	38045	38045		2.9952	1.5133	1				12010	2122	8608	8679	11731	11731					-0.09003673215784147
EPGDSGGD	8	Unmodified	_EPGDSGGD_					0	0	0		ENSG00000267909|ENST00000599174|CCDC177	ENSG00000267909|ENST00000599174|CCDC177	ENSG00000267909|ENST00000599174|CCDC177	MSMS	A375_MHC_IP_R2	2	367.05230712890625	2	367.13539	732.256227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.665	1	100.43	99.928	100.93	0.76278								0	0	0	0.16876	1	37804	37804		5.2307	0	1				12011	9968	8609	8680	11732	11732					-0.12061058534834501
EPGDVSLQEY	10	Unmodified	_EPGDVSLQEY_					0	0	0		nc|ENSG00000172752|A8TX70-2|COL6A5;ENSG00000172752|ENST00000373157|COL6A5;nc|ENSG00000172752|A8TX70|COL6A5	nc|ENSG00000172752|A8TX70-2|COL6A5	nc|ENSG00000172752|A8TX70-2|COL6A5	MSMS	A375_MHC_IP_R1	1	568.6723022460938	2	568.758943	1135.50333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.76	1	44.76	44.26	45.26	0								0	0	0	0.15038	1	15632	15632		17.113	1.2657	1				12012	7731	8610	8681	11733	11733					-0.0589976910673613
EPGIMRQTRNH	11	Unmodified	_EPGIMRQTRNH_					0	0	0		ENST00000565912.1_1_16:57413477-57416157:+|nuORF;ENST00000006053.6_2_16:57406464-57416157:+|nuORF;ENST00000563383.1_2_16:57406464-57416157:+|nuORF	ENST00000565912.1_1_16:57413477-57416157:+|nuORF	ENST00000565912.1_1_16:57413477-57416157:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	669.8684692382812	2	669.838402	1337.66225	-0.63149	-0.000423	3.0306	0.00203	2.3991	0.001607	669.8418507981876	94.016	0.25012	94.016	93.89	94.14	0					5	4	2	0	0	0	0.73238	1	34531	34531		6.6304	0	1	764690			12013	10057	8611	8682	11734	11734					0.006926660403905771
EPGVGIEIEKY	11	Unmodified	_EPGVGIEIEKY_					0	0	0		ENST00000504663.1_1_1:154142813-154142903:-|nuORF	ENST00000504663.1_1_1:154142813-154142903:-|nuORF	ENST00000504663.1_1_1:154142813-154142903:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	617.8837890625	2	617.321711	1232.62887	-0.62433	-0.00038541	0.13707	8.4615E-05	-0.48726	-0.00030079	617.3216665926291	108.57	0.66248	109.31	109.01	109.67	0.74683					32	12	3	0	0	0	0.62292	1	41043	41043		21.537	1.1224	1	6947600			12014	12823	8612	8683	11735	11735					0.021859427494746342
EPGVQADLQG	10	Unmodified	_EPGVQADLQG_					0	0	0			REV__ENSG00000005007|ENST00000262803|UPF1	REV__ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	A375_MHC_IP_R2	2	508.6755065917969	2	507.248546	1012.48254	-0.56444	-0.00028631	-0.51125	-0.00025933	-1.0757	-0.00054564	507.2481634393242	85.754	0.96602	86.49	86.137	87.103	0.73601					50	18	4	0	0	0	0.67512	1	32597	32597		15.248	3.0078	1	22327000	+		12015	16109	8613	8684	11736	11736					-0.02320314695759862
EPHDPLFYIE	10	Unmodified	_EPHDPLFYIE_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	A375_MHC_IP_R2	2	420.9505920410156	3	420.536278	1258.587	-0.30597	-0.00012867	-2.7275	-0.001147	-3.0335	-0.0012757	420.5354434230137	28.125	0.35486	28.803	28.655	29.01	0.67857					9	6	2	0	0	0	0.91909	1	9675	9675		5.4027	0.68679	1	1358100	+		12016	21320	8614	8685	11737	11737					-0.031946129390462374
EPHDYEYCCPC	11	Unmodified	_EPHDYEYCCPC_					0	0	0		ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	MSMS	A375_MHC_IP_R2	2	679.7291259765625	2	679.727948	1357.44134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.86	1	123.24	122.74	123.74	0.3766								0	0	0	0.16334	1	47143	47143		1.3295	0	1				12017	8151	8615	8686	11738	11738					-0.22307903113392058
EPHLLISLPQ	10	Unmodified	_EPHLLISLPQ_					0	0	0		ENST00000531709.6_1_11:62566311-62566866:-|nuORF	ENST00000531709.6_1_11:62566311-62566866:-|nuORF	ENST00000531709.6_1_11:62566311-62566866:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	574.2294921875	2	573.829506	1145.64446	-0.17712	-0.00010164	0.1461	8.3834E-05	-0.031026	-1.7804E-05	573.8296331917919	50.419	2.0347	50.419	49.947	51.982	0					67	39	2	0	0	0	0.68963	1	17866	17866		28.495	1.4061	1	2233600			12018	13176	8616	8687	11739	11739					0.07746274057171831
EPHLLISLPQ	10	Unmodified	_EPHLLISLPQ_					0	0	0		ENST00000531709.6_1_11:62566311-62566866:-|nuORF	ENST00000531709.6_1_11:62566311-62566866:-|nuORF	ENST00000531709.6_1_11:62566311-62566866:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	574.228759765625	2	573.829506	1145.64446	-0.44952	-0.00025795	0.33906	0.00019456	-0.11046	-6.3383E-05	573.829610544751	49.477	2.2815	50.234	49.741	52.023	0.75737					74	44	2	0	0	0	0.29801	1	18643	18643		40.239	8.9709	1	2226000			12019	13176	8616	8687	11740	11740					0.07746274057171831
EPHRAKQEAR	10	Unmodified	_EPHRAKQEAR_					0	0	0		nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19;nc|ENSG00000172046|O94966-2|USP19	nc|ENSG00000172046|O94966-7|USP19	nc|ENSG00000172046|O94966-7|USP19	MULTI-MSMS	A375_MHC_IP_R2	2	611.7254638671875	2	611.325985	1220.63742	-0.56229	-0.00034374	-0.67359	-0.00041178	-1.2359	-0.00075552	611.3255594599718	128.81	1.2145	129.05	128.6	129.82	0.23947					65	23	4	0	0	0	0.72078	1	50539	50539		2.9952	0.26005	1	19666000			12020	7674	8617	8688	11741	11741					0.03592354229317607
EPHRIMPITK	10	Unmodified	_EPHRIMPITK_					0	0	0		ENSG00000171467|ENST00000361428|ZNF318;nc|ENSG00000171467|Q5VUA4-2|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	MULTI-MSMS	A375_MHC_IP_R2	2	408.62261962890625	3	407.897264	1220.66996	0.068017	2.7744E-05	-0.80455	-0.00032817	-0.73653	-0.00030043	407.8973606038187	70.306	0.55948	71.041	70.743	71.302	0.73421					20	10	3	0	0	0	0.72006	1	26733	26733		3.3196	3.3196	1	761440			12021	7603	8618	8689	11742	11742					0.06845425307938058
EPHSSLGLY	9	Unmodified	_EPHSSLGLY_					0	0	0			REV__ENST00000478203.1_1_22:38203974-38209043:+|nuORF	REV__ENST00000478203.1_1_22:38203974-38209043:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.6839904785156	2	501.748182	1001.48181	-0.32069	-0.0001609	-0.93828	-0.00047078	-1.259	-0.00063168	501.7481486799682	57.098	1.1202	57.098	56.498	57.618	0					41	21	3	0	0	0	0.32899	1	20484	20484		28.487	11.374	1	4387500	+		12022	17050	8619	8690	11743	11743					-0.018871093448069587
EPHSSLGLY	9	Unmodified	_EPHSSLGLY_					0	0	0			REV__ENST00000478203.1_1_22:38203974-38209043:+|nuORF	REV__ENST00000478203.1_1_22:38203974-38209043:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	501.6842041015625	2	501.748182	1001.48181	-0.89505	-0.00044909	-0.38794	-0.00019465	-1.283	-0.00064374	501.74817695492993	56.315	1.2221	57.065	56.237	57.459	0.75014					38	23	2	0	0	0	0.43185	1	21298	21298		23.148	23.148	1	5384000	+		12023	17050	8619	8690	11744	11744					-0.018871093448069587
EPHSSLGLY	9	Unmodified	_EPHSSLGLY_					0	0	0			REV__ENST00000478203.1_1_22:38203974-38209043:+|nuORF	REV__ENST00000478203.1_1_22:38203974-38209043:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	502.1475830078125	2	501.748182	1001.48181	-0.89505	-0.00044909	-0.38794	-0.00019465	-1.283	-0.00064374	501.74817695492993	56.315	1.2221	57.065	56.237	57.459	0.75014					38	23	2	0	0	0	0.3607	1	21235	21235		42.095	11.458	1	5384000	+		12024	17050	8619	8690	11745	11745					-0.018871093448069587
EPIDENVPV	9	Unmodified	_EPIDENVPV_					0	0	0			REV__ENST00000461017.1_1_7:66262359-66272860:+|nuORF	REV__ENST00000461017.1_1_7:66262359-66272860:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	506.615234375	2	506.253297	1010.49204	-0.40565	-0.00020536	1.7016	0.00086146	1.296	0.00065609	506.2540198358076	47.347	0.25725	47.347	47.159	47.416	0					5	4	2	0	0	0	0.73363	1	16624	16624		6.7232	0	1	662150	+		12025	19892	8620	8691	11746	11746					-0.012785464102307742
EPIIKVEFN	9	Unmodified	_EPIIKVEFN_					0	0	0			REV__CON__P01030	REV__CON__P01030	MULTI-SECPEP	A375_MHC_IP_R2	2	544.6868896484375	2	544.802957	1087.59136	-0.9967	-0.000543	-0.56252	-0.00030646	-1.5592	-0.00084947	544.8027951388701	97.153	0.71176	97.909	97.569	98.281	0.75586					21	13	2	0	0	0	0.5212	1	36804	36804		20.415	0	1	1478500	+	+	12026	15839	8621	8692	11747	11747					0.05106896274514838
EPIPELKPVCH	11	Unmodified	_EPIPELKPVCH_					0	0	0			REV__ENSG00000163257|ENST00000382247|DCAF16	REV__ENSG00000163257|ENST00000382247|DCAF16	MSMS	A375_MHC_IP_R2	2	631.2592163085938	2	631.334098	1260.65364	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.37	1	130.58	130.08	131.08	0.2142								0	0	0	0.16203	1	51240	51240		8.1555	0	1		+		12027	20347	8622	8693	11748	11748					0.0337429935120781
EPIPSYNIL	9	Unmodified	_EPIPSYNIL_					0	0	0		ENSG00000092140|ENST00000206595|G2E3;G2E3|p.H301Tfs*7|1|0.41|ENSG00000092140|chr14:30602015-30602016|-/A|frameshift_variant;ENST00000544007.5_1_14:31028384-31077115:+|nuORF	ENSG00000092140|ENST00000206595|G2E3	ENSG00000092140|ENST00000206595|G2E3	MULTI-SECPEP	A375_MHC_IP_R1	1	522.6366577148438	2	523.281857	1044.54916	-0.5372	-0.0002811	0.83581	0.00043737	0.29862	0.00015626	523.2821781494537	94.065	0.35075	94.065	93.89	94.241	0					10	6	2	0	0	0	0.53748	1	34605	34605		24.021	2.2739	1	585700			12028	1996	8623	8694	11749	11749					0.028669208661540324
EPIPSYNIL	9	Unmodified	_EPIPSYNIL_					0	0	0		ENSG00000092140|ENST00000206595|G2E3;G2E3|p.H301Tfs*7|1|0.41|ENSG00000092140|chr14:30602015-30602016|-/A|frameshift_variant;ENST00000544007.5_1_14:31028384-31077115:+|nuORF	ENSG00000092140|ENST00000206595|G2E3	ENSG00000092140|ENST00000206595|G2E3	MULTI-MATCH	A375_MHC_IP_R2	2		2	523.281857	1044.54916	-0.44842	-0.00023465	1.7633	0.0009227	1.3149	0.00068806	523.7842399739876	93.163	0.4592	93.902	93.746	94.205	0.73902	-0.081555	0.00017377	NaN	24.021	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	813640			12029	1996	8623	8694							0.028669208661540324
EPIRHQLPL	9	Unmodified	_EPIRHQLPL_					0	0	0			REV__ENST00000368218.8_2_1:156698707-156698803:+|nuORF	REV__ENST00000368218.8_2_1:156698707-156698803:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	368.2488708496094	3	368.217102	1101.62948	-0.1215	-4.4738E-05	0.40459	0.00014898	0.28309	0.00010424	368.2172769737403	23.167	0.30612	23.798	23.572	23.878	0.63014					10	5	2	0	0	0	0.62591	1	7354	7354		13.615	1.3742	1	1002000	+		12030	23990	8624	8695	11750	11750					0.08272826979850834
EPIRLAPPSGP	11	Unmodified	_EPIRLAPPSGP_					0	0	0			REV__nc|ENSG00000154914|Q70EL4-2|USP43	REV__nc|ENSG00000154914|Q70EL4-2|USP43	MULTI-SECPEP	A375_MHC_IP_R1	1	567.1976318359375	2	567.319306	1132.62406	-0.41548	-0.00023571	0.49331	0.00027987	0.077837	4.4158E-05	567.3198017458042	76.294	0.40375	76.294	76.017	76.421	0					10	7	2	0	0	0	0.95991	1	27713	27713		8.7454	1.4562	1	821890	+		12031	19904	8625	8696	11751	11751					0.06305103397380662
EPKAPGDLP	9	Unmodified	_EPKAPGDLP_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MULTI-MSMS	A375_MHC_IP_R1	1	462.64520263671875	2	462.245275	922.475997	-0.32615	-0.00015076	-0.24724	-0.00011429	-0.57339	-0.00026505	462.2450622233183	94.293	0.40498	94.293	94.041	94.446	0					11	7	2	0	0	0	0.67332	1	34684	34684		9.3831	1.473	1	825230			12032	14669	8626	8697	11752	11752					0.011657921435130447
EPKAPGDLP	9	Unmodified	_EPKAPGDLP_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MULTI-MATCH	A375_MHC_IP_R2	2		2	462.245275	922.475997	-0.37714	-0.00017433	0.50888	0.00023523	0.13174	6.0896E-05	462.24544272776194	93.422	0.60995	94.165	94.004	94.614	0.74269	-0.06372	0.00026712	NaN	9.3831	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	730230			12033	14669	8626	8697							0.011657921435130447
EPKEVPKDEPK	11	Unmodified	_EPKEVPKDEPK_					0	0	0			REV__tr|U7T261|U7T261_FUSNUProteinTonBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00482PE=3SV=1	REV__tr|U7T261|U7T261_FUSNUProteinTonBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00482PE=3SV=1	MSMS	A375_MHC_IP_R1	1	648.5123901367188	2	648.345717	1294.67688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.32	1	119.32	118.82	119.82	0								0	0	0	0.16124	1	44076	44076		12.241	0.74595	1		+		12034	28723	8627	8698	11753	11753					0.04133016669493372
EPKFLDGSYTA	11	Unmodified	_EPKFLDGSYTA_					0	0	0		CDH7|p.P157S|1|0.3|ENSG00000081138|chr18:65809962-65809962|C/T|missense_variant	CDH7|p.P157S|1|0.3|ENSG00000081138|chr18:65809962-65809962|C/T|missense_variant	CDH7|p.P157S|1|0.3|ENSG00000081138|chr18:65809962-65809962|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	614.4286499023438	2	614.298236	1226.58192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.98	1	118.98	118.48	119.48	0								0	0	0	0.16138	1	43907	43907		11.495	0.6952	1				12035	350	8628	8699	11754	11754					-0.022309168016590775
EPKLDRYIIGK	11	Unmodified	_EPKLDRYIIGK_					0	0	0			REV__ENST00000577881.1_1_17:60316192-60324457:-|nuORF	REV__ENST00000577881.1_1_17:60316192-60324457:-|nuORF	MSMS	A375_MHC_IP_R1	1	666.3858032226562	2	666.387719	1330.76089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.15	1	121.15	120.65	121.65	0								0	0	0	0.16258	1	44969	44969		5.2969	0	1		+		12036	17532	8629	8700	11755	11755					0.10873592557072698
EPKLFFTSPLV	11	Unmodified	_EPKLFFTSPLV_					0	0	0		ENST00000511398.1_1_4:54374388-54374445:-|nuORF	ENST00000511398.1_1_4:54374388-54374445:-|nuORF	ENST00000511398.1_1_4:54374388-54374445:-|nuORF	MSMS	A375_MHC_IP_R2	2	639.15380859375	2	639.360639	1276.70673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.71	1	119.32	118.82	119.82	0.60909								0	0	0	0.16124	1	45114	45114		15.248	5.8654	1				12037	12907	8630	8701	11756	11756					0.07944000405495899
EPKLRVLQFKA	11	Unmodified	_EPKLRVLQFKA_					0	0	0		ENST00000302823.7_1_2:204737664-204737712:+|nuORF	ENST00000302823.7_1_2:204737664-204737712:+|nuORF	ENST00000302823.7_1_2:204737664-204737712:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	665.13623046875	2	664.906079	1327.79761	-0.71104	-0.00047278	-4.1619	-0.0027673	-4.873	-0.0032401	665.4037016168021	117.64	0.3029	118.25	117.99	118.29	0.60909					7	5	2	0	0	0	0.99331	1	44424	44424		5.2969	0	1	18167000			12038	10553	8631	8702	11757	11757					0.14681889173630225
EPKPENLITF	10	Unmodified	_EPKPENLITF_					0	0	0			REV__PAPPA2|p.T179I|1|0.46|ENSG00000116183|chr1:176556858-176556858|C/T|missense_variant	REV__PAPPA2|p.T179I|1|0.46|ENSG00000116183|chr1:176556858-176556858|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	396.94873046875	3	396.548406	1186.62339	0.041926	1.6626E-05	0.57173	0.00022672	0.61365	0.00024334	396.5487592125805	86.264	0.45996	86.997	86.743	87.203	0.73301					18	8	3	0	0	0	0.62871	1	32833	32833		18.721	4.5031	1	1361700	+		12039	27715	8632	8703	11758	11758					0.03754263957648618
EPKQYLKIRR	10	Unmodified	_EPKQYLKIRR_					0	0	0			REV__nc|ENSG00000146414|Q149N8-2|SHPRH	REV__nc|ENSG00000146414|Q149N8-2|SHPRH	MSMS	A375_MHC_IP_R1	1	665.9273071289062	2	665.901328	1329.7881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.8	1	116.8	116.3	117.3	0								0	0	0	0.15372	1	42850	42850		8.7454	2.5396	1		+		12040	19535	8633	8704	11759	11759					0.13640120888112506
EPKTDQDEEH	10	Unmodified	_EPKTDQDEEH_					0	0	0		ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	MSMS	A375_MHC_IP_R2	2	614.5794677734375	2	614.259839	1226.50512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.7	1	122.14	121.64	122.64	0.44488								0	0	0	0.15451	1	46579	46579		6.2058	2.2614	1				12041	4266	8634	8705	11760	11760					-0.09906760088802002
EPKTRHSGFRL	11	Unmodified	_EPKTRHSGFRL_					0	0	0		nc|ENSG00000012061|P07992-3|ERCC1	nc|ENSG00000012061|P07992-3|ERCC1	nc|ENSG00000012061|P07992-3|ERCC1	MSMS	A375_MHC_IP_R1	1	664.3051147460938	2	664.36511	1326.71567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.18	1	124.18	123.68	124.68	0								0	0	0	0.16112	1	46643	46643		12.873	2.722	1				12042	14454	8635	8706	11761	11761					0.06537786814556057
EPKVKSKKRE	10	Unmodified	_EPKVKSKKRE_					0	0	0		ENST00000402743.2_1_1:44587827-44588175:-|nuORF;ENSG00000167088|ENST00000300413|SNRPD1	ENST00000402743.2_1_1:44587827-44588175:-|nuORF	ENST00000402743.2_1_1:44587827-44588175:-|nuORF	MSMS	A375_MHC_IP_R2	2	614.6576538085938	2	614.872237	1227.72992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.14	1	116.8	116.3	117.3	0.65962								0	0	0	0.1524	1	43824	43824		13.042	3.6593	1				12043	7154	8636	8707	11762	11762					0.12516439242858723
EPKWVDRDAY	10	Unmodified	_EPKWVDRDAY_					0	0	0			REV__ENST00000470167.1_1_2:189839215-189849763:+|nuORF	REV__ENST00000470167.1_1_2:189839215-189849763:+|nuORF	MSMS	A375_MHC_IP_R2	2	639.811279296875	2	639.809302	1277.60405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.76	1	122.2	121.7	122.7	0.44488								0	0	0	0.1524	1	46610	46610		13.042	6.8367	1		+	+	12044	15828	8637	8708	11763	11763					-0.023646923332080405
EPKYGYFHCKD	11	Unmodified	_EPKYGYFHCKD_					0	0	0		ENSG00000189167|ENST00000533490|ZAR1L	ENSG00000189167|ENST00000533490|ZAR1L	ENSG00000189167|ENST00000533490|ZAR1L	MSMS	A375_MHC_IP_R2	2	693.8193969726562	2	693.810987	1385.60742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.16	1	118.77	118.27	119.27	0.60909								0	0	0	0.16191	1	44836	44836		8.7454	0	1				12045	8966	8638	8709	11764	11764					-0.06995765550868782
EPKYSEFNQH	10	Unmodified	_EPKYSEFNQH_					0	0	0			REV__nc|ENSG00000143643|Q8NBP0-2|TTC13	REV__nc|ENSG00000143643|Q8NBP0-2|TTC13	MSMS	A375_MHC_IP_R1	1	639.788330078125	2	639.791109	1277.56767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.95	1	120.95	120.45	121.45	0								0	0	0	0.15451	1	44864	44864		6.2058	0.47393	1		+		12046	19378	8639	8710	11765	11765					-0.06001569229965753
EPLAGLRVFAT	11	Unmodified	_EPLAGLRVFAT_					0	0	0		ENST00000413380.5_2_7:18535349-18535451:+|nuORF	ENST00000413380.5_2_7:18535349-18535451:+|nuORF	ENST00000413380.5_2_7:18535349-18535451:+|nuORF	MSMS	A375_MHC_IP_R1	1	587.7192993164062	2	587.334956	1172.65536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.87	1	129.87	129.37	130.37	0								0	0	0	0.16203	1	49960	49960		8.1555	0	1				12047	11656	8640	8711	11766	11766					0.07593676431474705
EPLAKLGMV	9	Unmodified	_EPLAKLGMV_					0	0	0			REV__ENST00000409185.5_1_2:131806798-131807053:-|nuORF	REV__ENST00000409185.5_1_2:131806798-131807053:-|nuORF	MSMS	A375_MHC_IP_R2	2	479.6769104003906	2	479.275521	956.536489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.01	1	121.46	120.96	121.96	0.44488								0	0	0	0.15486	1	46236	46236		4.756	0.42677	1		+		12048	24463	8641	8712	11767	11767					0.0564818620226788
EPLDRLRRAL	10	Unmodified	_EPLDRLRRAL_					0	0	0			REV__ENSG00000177971|ENST00000403490|IMP3	REV__ENSG00000177971|ENST00000403490|IMP3	MULTI-MSMS	A375_MHC_IP_R2	2	619.7347412109375	2	619.870028	1237.7255	-0.67302	-0.00041719	-0.78028	-0.00048367	-1.4533	-0.00090086	619.8693015080177	131.63	2.8474	131.82	131.49	134.34	0.18953					103	54	5	0	0	0	0.72392	1	52130	52130		3.2813	3.2813	1	44167000	+		12049	21477	8642	8713	11768	11768					0.11614974819940471
EPLDRLRRAL	10	Unmodified	_EPLDRLRRAL_					0	0	0			REV__ENSG00000177971|ENST00000403490|IMP3	REV__ENSG00000177971|ENST00000403490|IMP3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	619.870028	1237.7255	-0.64632	-0.00040063	-1.1956	-0.00074115	-1.842	-0.0011418	619.8691770360064	131.72	2.641	131.72	131.48	134.12	0	-0.049883	-0.00025314	NaN	3.2813	95	51	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45884000	+		12050	21477	8642	8713							0.11614974819940471
EPLDRLRRAL	10	Unmodified	_EPLDRLRRAL_					0	0	0			REV__ENSG00000177971|ENST00000403490|IMP3	REV__ENSG00000177971|ENST00000403490|IMP3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	619.870028	1237.7255	-0.67302	-0.00041719	-0.78028	-0.00048367	-1.4533	-0.00090086	619.8693015080177	131.63	2.8474	131.82	131.49	134.34	0.18953	0.049883	0.00026181	NaN	3.2813	103	54	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44167000	+		12051	21477	8642	8713							0.11614974819940471
EPLPEYVQL	9	Unmodified	_EPLPEYVQL_					0	0	0		ENST00000502915.1_1_4:139481866-139482694:+|nuORF	ENST00000502915.1_1_4:139481866-139482694:+|nuORF	ENST00000502915.1_1_4:139481866-139482694:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	544.6868896484375	2	544.28714	1086.55973	-0.99852	-0.00054348	0.19176	0.00010437	-0.80677	-0.00043911	544.2870466922419	97.015	0.76225	97.771	97.519	98.281	0.75586					33	14	3	0	0	0	0.65246	1	36804	36804		6.7232	0	1	4752300			12052	12802	8643	8714	11769	11769					0.019909035205728287
EPLQRYWYVH	10	Unmodified	_EPLQRYWYVH_					0	0	0			REV__nc|ENSG00000276557|A0A087X0M5|TRBV18	REV__nc|ENSG00000276557|A0A087X0M5|TRBV18	MULTI-SECPEP	A375_MHC_IP_R2	2	695.060302734375	2	695.848761	1389.68297	-0.49806	-0.00034657	1.6142	0.0011233	1.1162	0.00077668	695.8514936827539	114.78	0.20273	115.47	115.32	115.52	0.68999					6	3	2	0	0	0	0.92957	1	43276	43276		3.2813	0.28607	1	1873800	+		12053	27545	8644	8715	11770	11770					0.0037157969170493743
EPLRFCGRY	9	Unmodified	_EPLRFCGRY_					0	0	0			REV__ENSG00000179314|ENST00000317744|WSCD1	REV__ENSG00000179314|ENST00000317744|WSCD1	MULTI-SECPEP	A375_MHC_IP_R2	2	380.27642822265625	3	380.858809	1139.5546	0.050344	1.9174E-05	1.3283	0.0005059	1.3787	0.00052508	381.19329867352883	27.432	0.35532	28.111	27.996	28.351	0.67857					9	6	2	0	0	0	0.75466	1	9445	9445		4.897	4.5303	1	1315100	+		12054	21555	8645	8716	11771	11771					-0.009596788230282982
EPLRPREGL	9	Unmodified	_EPLRPREGL_					0	0	0		nc|ENSG00000183798|Q9NT22-2|EMILIN3;ENSG00000183798|ENST00000332312|EMILIN3	nc|ENSG00000183798|Q9NT22-2|EMILIN3	nc|ENSG00000183798|Q9NT22-2|EMILIN3	MSMS	A375_MHC_IP_R2	2	356.3319396972656	3	356.204974	1065.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.066	1	23.696	23.196	24.196	0.63014								0	0	0	0.15486	1	7373	7373		11.495	1.4208	1				12055	8530	8646	8717	11772	11772					0.06291950083141273
EPLRVPLKQ	9	Unmodified	_EPLRVPLKQ_					0	0	0			REV__nc|ENSG00000073614|P29375-2|KDM5A	REV__nc|ENSG00000073614|P29375-2|KDM5A	MSMS	A375_MHC_IP_R2	2	540.7413940429688	2	540.332216	1078.64988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.97	1	124.3	123.8	124.8	0.32969								0	0	0	0.15468	1	47800	47800		13.906	5.3128	1		+		12056	16620	8647	8718	11773	11773					0.11369997639667417
EPLSNLFNNR	10	Unmodified	_EPLSNLFNNR_					0	0	0			REV__ENSG00000066557|ENST00000370952|LRRC40	REV__ENSG00000066557|ENST00000370952|LRRC40	MULTI-SECPEP	A375_MHC_IP_R2	2	401.9558410644531	3	401.875405	1202.60439	-0.31211	-0.00012543	-0.34091	-0.000137	-0.65302	-0.00026243	401.8751122187683	19.768	0.91283	20.378	19.942	20.855	0.61029					35	17	3	0	0	0	0.87043	1	6073	6073		13.519	2.024	1	1666100	+		12057	16519	8648	8719	11774	11774					0.011187273866198666
EPLSSWSSF	9	Unmodified	_EPLSSWSSF_					0	0	0			REV__ENST00000511800.5_1_4:99403271-99403322:-|nuORF	REV__ENST00000511800.5_1_4:99403271-99403322:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	520.6390380859375	2	520.24019	1038.46583	-0.34172	-0.00017778	-1.7441	-0.00090735	-2.0858	-0.0010851	520.2396487007703	78.492	0.80974	78.492	78.15	78.96	0					37	15	4	0	0	0	0.58047	1	28660	28660		15.847	2.3393	1	9011000	+		12058	25619	8649	8720	11775	11775					-0.051868155817146544
EPLWPRRNIV	10	Unmodified	_EPLWPRRNIV_					0	0	0			REV__nc|ENSG00000058668|P23634-7|ATP2B4	REV__nc|ENSG00000058668|P23634-7|ATP2B4	MULTI-SECPEP	A375_MHC_IP_R2	2	426.6246032714844	3	427.247173	1278.71969	-0.16719	-7.1432E-05	0.053915	2.3035E-05	-0.11328	-4.8397E-05	427.58130753487706	44.377	0.30424	45.146	44.985	45.289	0.76909					11	5	3	0	0	0	0.94163	1	16614	16614		1.7423	0.78	1	1259100	+		12059	16435	8650	8721	11776	11776					0.09147876308270497
EPMTSTAPA	9	Unmodified	_EPMTSTAPA_					0	0	0			REV__ENSG00000165238|ENST00000427277|WNK2	REV__ENSG00000165238|ENST00000427277|WNK2	MSMS	A375_MHC_IP_R1	1	452.6487121582031	2	452.707668	903.400783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.703	1	27.703	27.203	28.203	0								0	0	0	0.15486	1	8441	8441		7.9102	0.62092	1		+		12060	20564	8651	8722	11777	11777					-0.05478133379222072
EPNIPRRTL	9	Unmodified	_EPNIPRRTL_					0	0	0			REV__ENST00000416030.1_1_9:76089327-76090080:-|nuORF	REV__ENST00000416030.1_1_9:76089327-76090080:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	365.2852478027344	3	365.88049	1094.61964	-0.22608	-8.2718E-05	0.11158	4.0824E-05	-0.1145	-4.1894E-05	365.8809590728888	24.264	0.25383	24.908	24.806	25.06	0.64368					7	4	2	0	0	0	0.71071	1	7971	7971		6.6304	0	1	1047000	+		12061	24530	8652	8723	11778	11778					0.07611638974481139
EPPKWTHYWMT	11	Unmodified	_EPPKWTHYWMT_					0	0	0			REV__ENST00000442176.1_1_7:15734569-15734668:+|nuORF	REV__ENST00000442176.1_1_7:15734569-15734668:+|nuORF	MSMS	A375_MHC_IP_R1	1	738.3427734375	2	738.342455	1474.67036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.29	1	144.29	143.79	144.79	0								0	0	0	0.16353	1	55337	55337		0.35063	0	1		+		12062	24814	8653	8724	11779	11779					-0.04799199762851458
EPPLPSAEPL	10	Unmodified	_EPPLPSAEPL_					0	0	0		ENST00000465315.1_1_2:131099168-131099453:-|nuORF	ENST00000465315.1_1_2:131099168-131099453:-|nuORF	ENST00000465315.1_1_2:131099168-131099453:-|nuORF	MSMS	A375_MHC_IP_R1	1	525.1889038085938	2	525.279315	1048.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.1	1	133.1	132.6	133.6	0								0	0	0	0.15308	1	51327	51327		10.824	2.2306	1				12063	12239	8654	8725	11780	11780					0.02174617003538515
EPPLSLTSR	9	Unmodified	_EPPLSLTSR_					0	0	0			REV__KCNB2|p.P749Rfs*9|1|0.2|ENSG00000182674|chr8:72937598-72937598|C/-|frameshift_variant	REV__KCNB2|p.P749Rfs*9|1|0.2|ENSG00000182674|chr8:72937598-72937598|C/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	500.19842529296875	2	500.277106	998.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130	1	130	129.5	130.5	0								0	0	0	0.15142	1	50010	50010		19.257	1.1106	1		+		12064	21704	8655	8726	11781	11781					0.04033152580598198
EPPPELGP	8	Unmodified	_EPPPELGP_					0	0	0			REV__ENSG00000108352|ENST00000620260|RAPGEFL1	REV__ENSG00000108352|ENST00000620260|RAPGEFL1	MULTI-SECPEP	A375_MHC_IP_R1	1	834.9124145507812	1	835.41961	834.412334	-0.46601	-0.00038931	-0.47578	-0.00039748	-0.94179	-0.00078679	835.4193387392341	80.94	0.50893	80.94	80.642	81.151	0					16	9	2	0	0	0	0.972	1	29461	29461		0.79363	0	1	2224100	+		12065	17524	8656	8727	11782	11782					-0.011495682935787954
EPQGQGQC	8	Unmodified	_EPQGQGQC_					0	0	0			REV__ENST00000258796.11_1_7:2702399-2703008:+|nuORF	REV__ENST00000258796.11_1_7:2702399-2703008:+|nuORF	MSMS	A375_MHC_IP_R1	1	423.6745300292969	2	423.67416	845.333766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.07	1	125.07	124.57	125.57	0								0	0	0	0.16876	1	47392	47392		4.756	1.8668	1		+		12066	23169	8657	8728	11783	11783					-0.09508743870310354
EPQIYIPYFRY	11	Unmodified	_EPQIYIPYFRY_					0	0	0			REV__ENSG00000162877|ENST00000367136|PM20D1	REV__ENSG00000162877|ENST00000367136|PM20D1	MSMS	A375_MHC_IP_R1	1	744.5098876953125	2	744.879727	1487.7449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.99	1	118.99	118.49	119.49	0								0	0	0	0.16223	1	43910	43910		7.1017	0.47135	1		+		12067	20314	8658	8729	11784	11784					0.02053886320163656
EPQLAKQGGAL	11	Unmodified	_EPQLAKQGGAL_					0	0	0			REV__ENST00000579853.5_1_17:46048490-46051020:+|nuORF	REV__ENST00000579853.5_1_17:46048490-46051020:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	556.707763671875	2	556.308938	1110.60332	-0.18039	-0.00010035	-2.4615	-0.0013694	-2.6419	-0.0014697	556.3073319298677	127.29	1.114	127.29	127.01	128.13	0					27	21	2	0	0	0	0.72494	1	48666	48666		13.615	1.3742	1	9180200	+		12068	26337	8659	8730	11785	11785					0.0524451301771478
EPQLKEWMA	9	Unmodified	_EPQLKEWMA_					0	0	0			REV__ENST00000396846.7_1_16:3433014-3433212:-|nuORF	REV__ENST00000396846.7_1_16:3433014-3433212:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	378.2645568847656	3	377.854953	1130.54303	0.21312	8.0529E-05	-2.8639	-0.0010821	-2.6508	-0.0010016	377.8538158110779	27.332	0.30582	28.011	27.741	28.047	0.67857					6	5	2	0	0	0	0.7911	1	9339	9339		4.5289	0	1	1429500	+		12069	24347	8660	8731	11786	11786					-0.017019206370378015
EPQPLRFYW	9	Unmodified	_EPQPLRFYW_					0	0	0			REV__ENST00000382252.5_1_7:6695000-6695141:+|nuORF	REV__ENST00000382252.5_1_7:6695000-6695141:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	412.60943603515625	3	412.545108	1234.61349	0.18884	7.7907E-05	0.49197	0.00020296	0.68081	0.00028087	412.54515368921074	73.918	0.30476	73.918	73.74	74.045	0					9	5	2	0	0	0	0.60982	1	26907	26907		14.405	3.6059	1	1073200	+		12070	24244	8661	8732	11787	11787					0.00557120742951156
EPQPLRFYW	9	Unmodified	_EPQPLRFYW_					0	0	0			REV__ENST00000382252.5_1_7:6695000-6695141:+|nuORF	REV__ENST00000382252.5_1_7:6695000-6695141:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	412.545108	1234.61349	0.18884	7.7907E-05	0.49197	0.00020296	0.68081	0.00028087	412.54515368921074	73.918	0.30476	73.918	73.74	74.045	0	0.12263	0.00043053	NaN	14.405	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1073200	+		12071	24244	8661	8732							0.00557120742951156
EPRFQFSISAG	11	Unmodified	_EPRFQFSISAG_					0	0	0			REV__CALCOCO2|p.P122S|1|0.27|ENSG00000136436|chr17:48848402-48848402|C/T|missense_variant	REV__CALCOCO2|p.P122S|1|0.27|ENSG00000136436|chr17:48848402-48848402|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	412.9247131347656	3	413.543655	1237.60914	0.65399	0.00027045	-0.70913	-0.00029326	-0.05514	-2.2803E-05	413.8777416467771	44.517	0.66176	44.517	44.216	44.878	0					22	12	3	0	0	0	0.99778	1	15664	15664		2.084	2.084	1	2125900	+		12072	15565	8662	8733	11788	11788					-0.0001638847061258275
EPRFSPSNY	9	Unmodified	_EPRFSPSNY_					0	0	0			REV__nc|ENSG00000155754|Q53TS8-1|C2CD6	REV__nc|ENSG00000155754|Q53TS8-1|C2CD6	MULTI-SECPEP	A375_MHC_IP_R1	1	366.5732421875	3	366.173451	1095.49852	-0.012759	-4.6719E-06	-0.023873	-8.7415E-06	-0.036631	-1.3413E-05	366.1734317406689	23.915	0.25426	23.915	23.787	24.042	0					10	4	3	0	0	0	0.65623	1	6699	6699		13.615	0	1	6391100	+		12073	19936	8663	8734	11789	11789					-0.04540608458864881
EPRKLRRQLRL	11	Unmodified	_EPRKLRRQLRL_					0	0	0			REV__nc|ENSG00000087074|O75807-2|PPP1R15A	REV__nc|ENSG00000087074|O75807-2|PPP1R15A	MSMS	A375_MHC_IP_R2	2	732.9454345703125	2	732.965326	1463.9161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.48	1	124.81	124.31	125.31	0.32969								0	0	0	0.16297	1	48163	48163		3.2813	1.9518	1		+		12074	16862	8664	8735	11790	11790					0.20269681202034917
EPRLLHLED	9	Unmodified	_EPRLLHLED_					0	0	0		ENST00000155840.9_1_11:2608804-2610073:+|nuORF	ENST00000155840.9_1_11:2608804-2610073:+|nuORF	ENST00000155840.9_1_11:2608804-2610073:+|nuORF	MSMS	A375_MHC_IP_R2	2	374.4334411621094	3	374.536501	1120.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.97	1	42.745	42.245	43.245	0.77451								0	0	0	0.15119	1	15598	15598		19.626	5.4078	1				12075	10064	8665	8736	11791	11791					0.032202265006844755
EPRLLRSE	8	Unmodified	_EPRLLRSE_					0	0	0		ENST00000409700.4_2_5:140308486-140308663:+|nuORF	ENST00000409700.4_2_5:140308486-140308663:+|nuORF	ENST00000409700.4_2_5:140308486-140308663:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	500.6823425292969	2	500.282723	998.550893	-0.098376	-4.9216E-05	0.047877	2.3952E-05	-0.050499	-2.5264E-05	500.2826546918924	126.53	1.5133	126.53	125.65	127.16	0					55	29	2	0	0	0	0.7773	1	48331	48331		4.756	4.756	1	23222000			12076	11639	8666	8737	11792	11792					0.051559746747557256
EPRLPPKKTKH	11	Unmodified	_EPRLPPKKTKH_					0	0	0		ENSG00000151690|ENST00000392328|MFSD6;ENST00000486123.1_1_2:191354555-191362511:+|nuORF	ENSG00000151690|ENST00000392328|MFSD6	ENSG00000151690|ENST00000392328|MFSD6	MSMS	A375_MHC_IP_R1	1	665.8885498046875	2	665.901328	1329.7881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.02	1	118.02	117.52	118.52	0								0	0	0	0.16203	1	43396	43396		8.1555	1.0538	1				12077	5920	8667	8738	11793	11793					0.13640120888112506
EPRLQPLQPES	11	Unmodified	_EPRLQPLQPES_					0	0	0			REV__ENST00000238379.9_1_9:116136341-116136734:-|nuORF	REV__ENST00000238379.9_1_9:116136341-116136734:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	431.6430358886719	3	431.898098	1292.67246	-0.23915	-0.00010329	3.3248	0.001436	3.0856	0.0013327	431.89915191689937	75.67	0.25581	76.411	76.282	76.538	0.74052					5	4	2	0	0	0	0.98303	1	28734	28734		10.527	1.7757	1	538480	+		12078	23090	8668	8739	11794	11794					0.037835522466366456
EPRPLSSYDTF	11	Unmodified	_EPRPLSSYDTF_					0	0	0			REV__ENST00000459799.1_1_1:151140554-151141558:+|nuORF	REV__ENST00000459799.1_1_1:151140554-151141558:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	657.0037231445312	2	656.314417	1310.61428	-0.75579	-0.00049603	0.4466	0.00029311	-0.30919	-0.00020292	656.3146378772832	67.306	0.86935	67.306	66.785	67.654	0					26	16	2	0	0	0	0.72869	1	24445	24445		10.151	0.076642	1	1030600	+		12079	24955	8669	8740	11795	11795					-0.02860129398686695
EPRQGRWE	8	Unmodified	_EPRQGRWE_					0	0	0		ENST00000587730.5_1_19:14520811-14521537:-|nuORF	ENST00000587730.5_1_19:14520811-14521537:-|nuORF	ENST00000587730.5_1_19:14520811-14521537:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	529.6907958984375	2	529.262322	1056.51009	-0.66495	-0.00035193	-0.086553	-4.5809E-05	-0.7515	-0.00039774	529.2622689839073	19.597	0.25439	19.597	19.42	19.674	0					6	4	2	0	0	0	0.76184	1	4912	4912		21.747	5.8995	1	1248500			12080	13749	8670	8741	11796	11796					-0.015903666448593867
EPRQRFWRHWL	11	Unmodified	_EPRQRFWRHWL_					0	0	0		ENSG00000134020|ENST00000256404|PEBP4	ENSG00000134020|ENST00000256404|PEBP4	ENSG00000134020|ENST00000256404|PEBP4	MULTI-SECPEP	A375_MHC_IP_R1	1	805.3218383789062	2	805.9262	1609.83785	-0.24664	-0.00019878	-2.6353	-0.0021239	-2.8819	-0.0023226	805.9244297450615	126	0.15091	126	125.9	126.05	0					4	2	2	0	0	0	0.99738	1	48075	48075		1.0715	0	1	7981600			12081	4543	8671	8742	11797	11797					0.057322486168004616
EPRQRFWRHWL	11	Unmodified	_EPRQRFWRHWL_					0	0	0		ENSG00000134020|ENST00000256404|PEBP4	ENSG00000134020|ENST00000256404|PEBP4	ENSG00000134020|ENST00000256404|PEBP4	MSMS	A375_MHC_IP_R2	2	805.89892578125	2	805.9262	1609.83785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.64	1	111.38	110.88	111.88	0.73692								0	0	0	0.16339	1	41732	41732		1.0715	0.76443	1				12082	4543	8671	8742	11798	11798					0.057322486168004616
EPRRRRASHSW	11	Unmodified	_EPRRRRASHSW_					0	0	0			REV__ENST00000392749.6_2_2:162016907-162036151:+|nuORF	REV__ENST00000392749.6_2_2:162016907-162036151:+|nuORF	MSMS	A375_MHC_IP_R2	2	719.3841552734375	2	719.382157	1436.74976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.8	1	88.532	88.032	89.032	0.7318								0	0	0	0.16297	1	33401	33401		3.2813	0	1		+		12083	24278	8672	8743	11799	11799					0.048856280261588836
EPRSMFLNW	9	Unmodified	_EPRSMFLNW_					0	0	0			REV__ENST00000544307.1_1_12:20725060-20833202:+|nuORF	REV__ENST00000544307.1_1_12:20725060-20833202:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	393.5877380371094	3	393.858698	1178.55426	-0.12595	-4.9605E-05	0.60351	0.0002377	0.47756	0.00018809	393.8590085457185	27.579	0.7097	28.258	27.843	28.553	0.67857					23	13	2	0	0	0	0.72623	1	9414	9414		9.544	0	1	8686100	+		12084	21156	8673	8744	11800	11800					-0.02787098542876265
EPRTLLERGE	10	Unmodified	_EPRTLLERGE_					0	0	0			REV__nc|ENSG00000293518|Q5YKI7-2|GGNBP1	REV__nc|ENSG00000293518|Q5YKI7-2|GGNBP1	MSMS	A375_MHC_IP_R2	2	600.3216552734375	2	600.322576	1198.6306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.75	1	23.38	22.88	23.88	0.63014								0	0	0	0.15541	1	7245	7245		3.2813	0	1		+		12085	27566	8674	8745	11801	11801					0.03922996558071645
EPRVPHPL	8	Unmodified	_EPRVPHPL_					0	0	0			REV__ENSG00000173418|ENST00000334982|NAA20	REV__ENSG00000173418|ENST00000334982|NAA20	MSMS	A375_MHC_IP_R2	2	472.6693420410156	2	472.769252	943.52395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.351	1	22.971	22.471	23.471	0.61932								0	0	0	0.16876	1	7095	7095		19.439	1.304	1		+		12086	21221	8675	8746	11802	11802					0.04992910854230104
EPRWFMKYQHV	11	Unmodified	_EPRWFMKYQHV_					0	0	0		ENSG00000161048|ENST00000465647|NAPEPLD	ENSG00000161048|ENST00000465647|NAPEPLD	ENSG00000161048|ENST00000465647|NAPEPLD	MSMS	A375_MHC_IP_R2	2	761.1890258789062	2	760.876996	1519.73944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.707	1	96.457	95.957	96.957	0.75045								0	0	0	0.16302	1	36351	36351		2.9952	1.6657	1				12087	6462	8676	8747	11803	11803					0.0003588425672660378
EPRWRRMKIQD	11	Unmodified	_EPRWRRMKIQD_					0	0	0			REV__ENST00000484541.5_1_10:127478031-127484749:-|nuORF	REV__ENST00000484541.5_1_10:127478031-127484749:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	505.9607238769531	3	505.605143	1513.7936	-0.064701	-3.2713E-05	-1.8118	-0.00091607	-1.8765	-0.00094879	505.9386723968985	21.906	0.25538	21.906	21.706	21.962	0					6	4	2	0	0	0	1.0012	1	5832	5832		1.2148	1.1504	1	645380	+		12088	25300	8677	8748	11804	11804					0.05725476408292707
EPSDMSDPEM	10	Unmodified	_EPSDMSDPEM_					0	0	0		nc|ENSG00000100884|O95741-2|CPNE6	nc|ENSG00000100884|O95741-2|CPNE6	nc|ENSG00000100884|O95741-2|CPNE6	MULTI-MSMS	A375_MHC_IP_R2	2	1138.12939453125	1	1137.40747	1136.40019	0.11615	0.00013211	0.76666	0.00087201	0.88281	0.0010041	1138.4108928349226	130.3	0.50537	130.51	130.05	130.55	0.2142					10	9	2	0	0	0	0.71245	1	51042	51042		6.7232	2.3939	1	15308000			12089	14510	8678	8749	11805	11805					-0.1625534088123004
EPSEEDKMVP	10	Unmodified	_EPSEEDKMVP_					0	0	0		ENSG00000144278|ENST00000392825|GALNT13	ENSG00000144278|ENST00000392825|GALNT13	ENSG00000144278|ENST00000392825|GALNT13	MULTI-SECPEP	A375_MHC_IP_R1	1	580.6870727539062	2	580.760629	1159.5067	-0.29508	-0.00017137	0.49503	0.00028749	0.19995	0.00011612	581.262268962866	76.768	0.86399	76.768	76.219	77.083	0					20	16	2	0	0	0	0.88918	1	27911	27911		18.146	3.3081	1	1301200			12090	5475	8679	8750	11806	11806					-0.06666842324398203
EPSIVSSNYL	10	Unmodified	_EPSIVSSNYL_					0	0	0			REV__ATP7B|p.P405S|1|0.32|ENSG00000123191|chr13:51974007-51974007|G/A|missense_variant	REV__ATP7B|p.P405S|1|0.32|ENSG00000123191|chr13:51974007-51974007|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	554.8939819335938	2	554.779679	1107.5448	-0.84583	-0.00046925	-0.88653	-0.00049183	-1.7324	-0.00096108	554.7798797988394	107.25	0.50722	108	107.69	108.2	0.75436					15	9	2	0	0	0	0.41205	1	40520	40520		33.445	2.1766	1	1307000	+		12091	15480	8680	8751	11807	11807					-0.00466588347421748
EPSLETEQKSI	11	Unmodified	_EPSLETEQKSI_					0	0	0			REV__ENST00000592662.5_1_19:13039347-13044510:-|nuORF	REV__ENST00000592662.5_1_19:13039347-13044510:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	421.2823791503906	3	420.882114	1259.62451	-0.18468	-7.773E-05	1.0169	0.00042798	0.83217	0.00035025	420.88251647143414	40.41	0.45602	41.185	40.93	41.386	0.77451					11	8	2	0	0	0	0.9348	1	15009	15009		14.838	3.2065	1	2274900	+		12092	21543	8681	8752	11808	11808					0.005084335359015313
EPSTARVF	8	Unmodified	_EPSTARVF_					0	0	0			REV__ENSG00000109920|ENST00000263773|FNBP4	REV__ENSG00000109920|ENST00000263773|FNBP4	MULTI-SECPEP	A375_MHC_IP_R2	2	453.1503601074219	2	453.737617	905.460681	-0.42301	-0.00019194	0.89666	0.00040685	0.47365	0.00021491	453.73782648559387	72.234	0.45555	72.969	72.77	73.225	0.73421					14	8	2	0	0	0	0.94479	1	27401	27401		13.508	7.7475	1	1221100	+		12093	17603	8682	8753	11809	11809					0.004169253463373934
EPSTVGLYQ	9	Unmodified	_EPSTVGLYQ_					0	0	0			REV__ENSG00000174373|ENST00000680220|RALGAPA1	REV__ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-SECPEP	A375_MHC_IP_R2	2	497.6474304199219	2	497.248015	992.481476	-0.40698	-0.00020237	-0.17919	-8.9099E-05	-0.58616	-0.00029147	497.2478972174117	87.65	1.0112	88.382	87.965	88.976	0.7318					48	19	4	0	0	0	0.20567	1	33283	33283		46.021	2.1627	1	13268000	+		12094	21281	8683	8754	11810	11810					-0.015065290646589347
EPSWECKFDH	10	Unmodified	_EPSWECKFDH_					0	0	0		ENSG00000166342|ENST00000327305|NETO1;nc|ENSG00000166342|Q8TDF5-2|NETO1;nc|ENSG00000166342|Q8TDF5-1|NETO1	ENSG00000166342|ENST00000327305|NETO1	ENSG00000166342|ENST00000327305|NETO1	MSMS	A375_MHC_IP_R2	2	639.268310546875	2	639.266413	1276.51827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.85	1	119.46	118.96	119.96	0.60909								0	0	0	0.15417	1	45180	45180		7.2892	0.56607	1				12095	7062	8684	8755	11811	11811					-0.1089260051041947
EPSYSLLKPLY	11	Unmodified	_EPSYSLLKPLY_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-6|THADA	REV__nc|ENSG00000115970|Q6YHU6-6|THADA	MSMS	A375_MHC_IP_R1	1	655.5300903320312	2	655.355554	1308.69655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.77	1	105.77	105.27	106.27	0								0	0	0	0.16124	1	38830	38830		12.241	5.5175	1		+		12096	17926	8685	8756	11812	11812					0.05455392680278237
EPTDARKKGEK	11	Unmodified	_EPTDARKKGEK_					0	0	0		ENSG00000102241|ENST00000218364|HTATSF1	ENSG00000102241|ENST00000218364|HTATSF1	ENSG00000102241|ENST00000218364|HTATSF1	MULTI-MSMS	A375_MHC_IP_R2	2	630.2174682617188	2	629.841133	1257.66771	-0.79088	-0.00049813	0.34631	0.00021812	-0.44457	-0.00028001	629.8430894789298	124.44	0.30257	124.77	124.55	124.85	0.32969					7	5	2	0	0	0	0.67989	1	48042	48042		17.113	0.96379	1	12542000			12097	2367	8686	8757	11813	11813					0.04918668103869095
EPTDKVERI	9	Unmodified	_EPTDKVERI_					0	0	0		ENST00000604306.1_1_14:24684951-24700866:-|nuORF;ENST00000560427.1_1_14:24686335-24687646:-|nuORF;ENST00000527046.5_1_14:24686335-24700866:-|nuORF;ENSG00000129559|ENST00000250495|NEDD8	ENST00000604306.1_1_14:24684951-24700866:-|nuORF	ENST00000604306.1_1_14:24684951-24700866:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	362.96441650390625	3	362.864506	1085.57169	-0.06599	-2.3946E-05	-0.27223	-9.8782E-05	-0.33822	-0.00012273	362.8642878034032	23.979	0.25364	23.979	23.838	24.092	0					7	4	2	0	0	0	0.61758	1	6679	6679		16.275	4.7567	1	1633400			12098	4197	8687	8758	11814	11814					0.032325202637593975
EPTGDGHCEA	10	Unmodified	_EPTGDGHCEA_					0	0	0			REV__ENST00000464395.1_1_10:3185767-3189991:-|nuORF	REV__ENST00000464395.1_1_10:3185767-3189991:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	508.6836853027344	2	508.192913	1014.37127	-0.33841	-0.00017198	2.0942	0.0010643	1.7558	0.0008923	508.1944679699238	70.815	0.66479	70.815	70.494	71.159	0					26	12	3	0	0	0	0.70496	1	25649	25649		10.074	1.4806	1	1972100	+		12099	25012	8688	8759	11815	11815					-0.13533697395348554
EPTIDLNRVL	10	Unmodified	_EPTIDLNRVL_					0	0	0		ENSG00000108417|ENST00000225550|KRT37;ENSG00000171360|ENST00000246646|KRT38;CON__O76015;CON__O76014	ENSG00000108417|ENST00000225550|KRT37	ENSG00000108417|ENST00000225550|KRT37	MULTI-SECPEP	A375_MHC_IP_R2	2	390.2695617675781	3	390.555672	1168.64519	-0.15765	-6.1569E-05	3.1102	0.0012147	2.9525	0.0011531	390.89154516065554	27.681	0.50581	28.359	28.098	28.604	0.67857					22	9	4	0	0	0	0.88361	1	9447	9447		7.9454	2.5427	1	3458800		+	12100	576	8689	8760	11816	11816					0.06761068706236983
EPTLLGEF	8	Unmodified	_EPTLLGEF_					0	0	0			REV__ENSG00000163554|ENST00000643759|SPTA1	REV__ENSG00000163554|ENST00000643759|SPTA1	MSMS	A375_MHC_IP_R2	2	453.1503601074219	2	453.234376	904.454199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.206	1	72.94	72.44	73.44	0.73421								0	0	0	0.16876	1	27401	27401		18.135	0	1		+		12101	20378	8690	8761	11817	11817					-0.00185012605038537
EPTLRSLLWY	10	Unmodified	_EPTLRSLLWY_					0	0	0		nc|ENSG00000133863|Q9BXT5|TEX15;ENSG00000133863|ENST00000643185|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	MULTI-SECPEP	A375_MHC_IP_R2	2	425.9504699707031	3	426.567801	1276.68157	-0.45374	-0.00019355	0.36318	0.00015492	-0.09056	-3.863E-05	426.56810003350614	19.105	0.35178	19.708	19.583	19.935	0.60308					10	6	2	0	0	0	0.94447	1	5796	5796		2.8433	1.5136	1	1556500			12102	4534	8691	8762	11818	11818					0.054299456029411886
EPTNHLDM	8	Unmodified	_EPTNHLDM_					0	0	0		ENST00000473311.5_1_3:183906074-183911483:+|nuORF;nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000480539.1_1_3:183911123-183911483:+|nuORF;ENST00000468892.5_1_3:183910449-183911483:+|nuORF	ENST00000473311.5_1_3:183906074-183911483:+|nuORF	ENST00000473311.5_1_3:183906074-183911483:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	479.1106262207031	2	478.710742	955.406931	-0.41485	-0.00019859	0.79001	0.00037819	0.37517	0.0001796	478.7111788657817	96.504	0.55863	96.504	96.223	96.781	0					14	10	2	0	0	0	0.972	1	35497	35497		9.3474	4.1168	1	981600			12103	6468	8692	8763	11819	11819					-0.07255615147687422
EPTNHLDM	8	Unmodified	_EPTNHLDM_					0	0	0		ENST00000473311.5_1_3:183906074-183911483:+|nuORF;nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000480539.1_1_3:183911123-183911483:+|nuORF;ENST00000468892.5_1_3:183910449-183911483:+|nuORF	ENST00000473311.5_1_3:183906074-183911483:+|nuORF	ENST00000473311.5_1_3:183906074-183911483:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	478.710742	955.406931	-0.43441	-0.00020796	0.62604	0.00029969	0.19163	9.1736E-05	478.711027424588	95.759	0.45751	96.51	96.195	96.653	0.75045	0.0029587	-0.00012584	NaN	5.2307	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	900110			12104	6468	8692	8763							-0.07255615147687422
EPTPLPQFP	9	Unmodified	_EPTPLPQFP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;TTN|p.L14011*|1|0.26|ENSG00000155657|chr2:178618595-178618595|A/-|frameshift_variant;TTN|p.V5956Efs*8|1|0.3|ENSG00000155657|chr2:178729292-178729338|CAGGGCAACTCTAGTACTGCATGAGCAGCTGCCGCCTTCATTGGATA/-|frameshift_variant;TTN|p.F5884Lfs*5|1|0.04|ENSG00000155657|chr2:178729553-178729553|A/-|frameshift_variant;TTN|p.D2189Tfs*17|1|0.21|ENSG00000155657|chr2:178775147-178775147|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R2	2	1028.43505859375	1	1025.53022	1024.52295	0.24701	0.00025332	0.45444	0.00046604	0.70145	0.00071936	1025.5305999430723	112.52	1.7812	113.25	112.82	114.6	0.72458					68	34	4	0	0	0	0.38603	1	42384	42384		25.399	2.2509	1	69659000			12105	6151;14694;14693	8693	8764	11820	11820					0.011666516946434058
EPTVNKIKAK	10	Unmodified	_EPTVNKIKAK_					0	0	0			REV__ENSG00000198759|ENST00000361306|EGFL6	REV__ENSG00000198759|ENST00000361306|EGFL6	MSMS	A375_MHC_IP_R1	1	564.3590698242188	2	564.342781	1126.67101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.659	1	53.659	53.159	54.159	0								0	0	0	0.15365	1	19141	19141		14.838	0	1		+		12106	22414	8694	8765	11821	11821					0.11273962948507688
EPVDPLLESI	10	Unmodified	_EPVDPLLESI_					0	0	0			REV__nc|ENSG00000154556|O94875-11|SORBS2	REV__nc|ENSG00000154556|O94875-11|SORBS2	MULTI-SECPEP	A375_MHC_IP_R2	2	556.2366333007812	2	556.297704	1110.58086	-0.58233	-0.00032395	-0.80418	-0.00044736	-1.3865	-0.00077131	556.7987185745952	141.9	0.45374	141.93	141.72	142.18	0.030731					14	8	2	0	0	0	0.93799	1	55569	55569		3.5965	0	1	892590	+		12107	27299	8695	8766	11822	11822					0.02998868829422463
EPVEAEEQG	9	Unmodified	_EPVEAEEQG_					0	0	0			REV__CEP164|p.D558V|1|0.3|ENSG00000110274|chr11:117382891-117382891|A/T|missense_variant	REV__CEP164|p.D558V|1|0.3|ENSG00000110274|chr11:117382891-117382891|A/T|missense_variant	MSMS	A375_MHC_IP_R1	1	494.1466979980469	2	494.216911	986.41927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.077	1	65.077	64.577	65.577	0								0	0	0	0.15486	1	23556	23556		11.64	2.2929	1		+		12108	15638	8696	8767	11823	11823					-0.07448300203657254
EPVLPPVHLW	10	Unmodified	_EPVLPPVHLW_					0	0	0		ENST00000421116.1_1_22:42973213-42976277:-|nuORF;ENST00000357802.6_1_22:42970741-42976277:-|nuORF	ENST00000421116.1_1_22:42973213-42976277:-|nuORF	ENST00000421116.1_1_22:42973213-42976277:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	594.233154296875	2	593.834591	1185.65463	-0.21452	-0.00012739	-0.53265	-0.00031631	-0.74717	-0.0004437	593.8342358162131	117.76	0.60924	117.76	117.41	118.02	0					25	11	3	0	0	0	0.92603	1	43321	43321		14.838	5.4908	1	6889900			12109	10988	8697	8768	11824	11824					0.06922881782406876
EPVPGAPA	8	Unmodified	_EPVPGAPA_					0	0	0		ENST00000493232.5_1_7:2578318-2579295:-|nuORF;ENST00000473879.1_1_7:2578318-2580643:-|nuORF	ENST00000493232.5_1_7:2578318-2579295:-|nuORF	ENST00000493232.5_1_7:2578318-2579295:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	737.4270629882812	1	737.382831	736.375555	-0.83351	-0.00061461	0.95339	0.00070301	0.11988	8.84E-05	737.3881658211498	124.65	0.20437	124.65	124.49	124.7	0					5	3	2	0	0	0	0.7479	1	46953	46953		20.871	0	1	5089100			12110	12397	8698	8769	11825	11825					-0.003178201194828034
EPVSEEFQN	9	Unmodified	_EPVSEEFQN_					0	0	0		nc|ENSG00000149972|O94779-4|CNTN5;nc|ENSG00000149972|O94779-2|CNTN5;ENSG00000149972|ENST00000524871|CNTN5	nc|ENSG00000149972|O94779-4|CNTN5	nc|ENSG00000149972|O94779-4|CNTN5	MSMS	A375_MHC_IP_R2	2	539.664306640625	2	539.738011	1077.46147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.082	1	91.816	91.316	92.316	0.7345								0	0	0	0.15486	1	34657	34657		11.64	3.047	1				12111	5836	8699	8770	11826	11826					-0.07416324795258333
EPVSRLAP	8	Unmodified	_EPVSRLAP_					0	0	0			REV__nc|ENSG00000137474|Q13402-4|MYO7A	REV__nc|ENSG00000137474|Q13402-4|MYO7A	MULTI-MSMS	A375_MHC_IP_R1	1	434.6557922363281	2	434.747985	867.481417	-0.49337	-0.00021449	0.44366	0.00019288	-0.049712	-2.1612E-05	434.7481936953721	26.191	0.50738	26.191	26.068	26.575	0					14	9	3	0	0	0	0.73111	1	7842	7842		25.399	3.6527	1	3170600	+		12112	27248	8700	8771	11827	11827					0.04237515726003949
EPVSRLAP	8	Unmodified	_EPVSRLAP_					0	0	0			REV__nc|ENSG00000137474|Q13402-4|MYO7A	REV__nc|ENSG00000137474|Q13402-4|MYO7A	MULTI-MATCH	A375_MHC_IP_R2	2		2	434.747985	867.481417	-0.71373	-0.00031029	0.39394	0.00017127	-0.31978	-0.00013903	434.7480189363772	25.526	0.35418	26.175	25.982	26.336	0.64925	-0.0078114	-2.874E-05	NaN	25.399	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1783000	+		12113	27248	8700	8771							0.04237515726003949
EPWCYSFTC	9	Unmodified	_EPWCYSFTC_					0	0	0			REV__ENST00000361297.6_1_1:46295165-46425069:+|nuORF	REV__ENST00000361297.6_1_1:46295165-46425069:+|nuORF	MSMS	A375_MHC_IP_R1	1	568.1459350585938	2	568.214803	1134.41505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.734	1	49.734	49.234	50.234	0								0	0	0	0.15486	1	17595	17595		4.3292	0.73274	1		+		12114	23906	8701	8772	11828	11828					-0.14677804222560553
EPWKRRQFQRY	11	Unmodified	_EPWKRRQFQRY_					0	0	0			REV__nc|ENSG00000196562|Q8IWU5-2|SULF2	REV__nc|ENSG00000196562|Q8IWU5-2|SULF2	MSMS	A375_MHC_IP_R1	1	531.690673828125	3	531.951419	1592.83243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.384	1	93.384	92.884	93.884	0								0	0	0	0.16334	1	34326	34326		1.3296	0.87513	1		+		12115	22208	8702	8773	11829	11829					0.059725250343262815
EPYEPFLY	8	Unmodified	_EPYEPFLY_					0	0	0			REV__nc|ENSG00000133131|Q8TE76-2|MORC4	REV__nc|ENSG00000133131|Q8TE76-2|MORC4	MULTI-MSMS	A375_MHC_IP_R2	2	529.6790161132812	2	529.247483	1056.48041	-0.76425	-0.00040448	-0.51594	-0.00027306	-1.2802	-0.00067753	529.2472090966224	65.936	0.55916	66.674	66.375	66.934	0.73811					28	10	3	0	0	0	0.77123	1	24908	24908		14.582	0	1	7286600	+		12116	18711	8703	8774	11830	11830					-0.045567434335680446
EPYEVAQFN	9	Unmodified	_EPYEVAQFN_					0	0	0		nc|ENSG00000102780|Q86XP1-5|DGKH;nc|ENSG00000102780|Q86XP1-3|DGKH;ENSG00000102780|ENST00000337343|DGKH;ENST00000498255.6_1_13:42728006-42769963:+|nuORF;nc|ENSG00000102780|Q86XP1-2|DGKH	nc|ENSG00000102780|Q86XP1-5|DGKH	nc|ENSG00000102780|Q86XP1-5|DGKH	MSMS	A375_MHC_IP_R1	1	548.6741333007812	2	548.750921	1095.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.733	1	73.733	73.233	74.233	0								0	0	0	0.1535	1	26853	26853		15.847	0	1				12117	2392	8704	8775	11831	11831					-0.05663430552999671
EPYPPSNPRL	10	Unmodified	_EPYPPSNPRL_					0	0	0		ENST00000568956.1_1_19:56128203-56128404:+|nuORF	ENST00000568956.1_1_19:56128203-56128404:+|nuORF	ENST00000568956.1_1_19:56128203-56128404:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	389.8660888671875	3	390.536501	1168.58767	0.088484	3.4556E-05	-0.54277	-0.00021197	-0.45428	-0.00017741	390.53645136598766	46.497	0.45348	46.497	46.245	46.699	0					13	8	3	0	0	0	0.94227	1	16343	16343		1.3296	0.55311	1	1756100			12118	13585	8705	8776	11832	11832					0.010122265006657472
EPYPTGGLTF	10	Unmodified	_EPYPTGGLTF_					0	0	0			REV__ENST00000520579.5_1_5:149495328-149514444:-|nuORF	REV__ENST00000520579.5_1_5:149495328-149514444:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	541.705322265625	2	541.263665	1080.51278	-0.73281	-0.00039665	0.098716	5.3431E-05	-0.6341	-0.00034321	541.7651163371658	95.265	0.4587	95.265	94.956	95.415	0					12	8	2	0	0	0	0.64716	1	34998	34998		36.127	7.6402	1	844810	+		12119	17799	8706	8777	11833	11833					-0.02425956030560883
EPYRKDNY	8	Unmodified	_EPYRKDNY_					0	0	0			REV__ENSG00000164975|ENST00000380821|SNAPC3	REV__ENSG00000164975|ENST00000380821|SNAPC3	MULTI-SECPEP	A375_MHC_IP_R2	2	362.9381408691406	3	362.173451	1083.49852	0.060528	2.1922E-05	-0.089305	-3.2344E-05	-0.028776	-1.0422E-05	362.1732692476229	43.891	0.40285	44.66	44.38	44.782	0.7691					12	7	2	0	0	0	0.972	1	16354	16354		1.6526	0	1	838920	+		12120	20536	8707	8778	11834	11834					-0.0398860845884883
EPYTCCFK	8	Unmodified	_EPYTCCFK_					0	0	0			REV__ENST00000466893.5_1_3:62262350-62302793:-|nuORF	REV__ENST00000466893.5_1_3:62262350-62302793:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	989.9149169921875	1	990.405951	989.398675	0.039409	3.9031E-05	-4.4898	-0.0044467	-4.4504	-0.0044077	990.4016381607971	125.15	0.5535	125.45	125.32	125.87	0.2951					14	10	2	0	0	0	0.94479	1	49008	49008		19.439	4.8573	1	197480000	+		12121	25046	8708	8779	11835	11835					-0.09644885388672719
EPYWKARVN	9	Unmodified	_EPYWKARVN_					0	0	0			REV__ENST00000488373.5_1_7:6415539-6442074:+|nuORF	REV__ENST00000488373.5_1_7:6415539-6442074:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	388.633056640625	3	388.204974	1161.59309	0.34533	0.00013406	-0.24999	-9.7047E-05	0.095342	3.7012E-05	388.20482067425695	70.367	0.46059	70.367	70.085	70.545	0					12	8	2	0	0	0	0.74768	1	25563	25563		2.7352	0	1	1526600	+		12122	18924	8709	8780	11836	11836					0.018759500831492915
EPYWKARVN	9	Unmodified	_EPYWKARVN_					0	0	0			REV__ENST00000488373.5_1_7:6415539-6442074:+|nuORF	REV__ENST00000488373.5_1_7:6415539-6442074:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	388.204974	1161.59309	-0.059221	-2.299E-05	-0.48628	-0.00018877	-0.5455	-0.00021176	388.20470284988266	69.512	0.50703	70.247	69.981	70.488	0.73421	-0.059911	-0.00013788	NaN	2.7352	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1225600	+		12123	18924	8709	8780							0.018759500831492915
EQACEEPLL	9	Unmodified	_EQACEEPLL_					0	0	0			REV__MAST4|p.P1007L|1|0.16|ENSG00000069020|chr5:67145305-67145305|C/T|missense_variant	REV__MAST4|p.P1007L|1|0.16|ENSG00000069020|chr5:67145305-67145305|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	516.1382446289062	2	516.239332	1030.46411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.82	1	31.82	31.32	32.32	0								0	0	0	0.15283	1	10223	10223		16.942	2.3606	1		+		12124	26989	8710	8781	11837	11837					-0.0499019266196683
EQACGWPG	8	Unmodified	_EQACGWPG_					0	0	0			REV__ENST00000492278.5_1_9:140356016-140356520:-|nuORF	REV__ENST00000492278.5_1_9:140356016-140356520:-|nuORF	MSMS	A375_MHC_IP_R1	1	424.137451171875	2	424.173795	846.333038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.274	1	54.274	53.774	54.774	0								0	0	0	0.16876	1	19367	19367		2.8892	0.31174	1		+		12125	25408	8711	8782	11838	11838					-0.09627538519373502
EQAEDEAQV	9	Unmodified	_EQAEDEAQV_					0	0	0			REV__ENSG00000041880|ENST00000398755|PARP3;REV__ENST00000470601.5_1_3:51977371-51978822:+|nuORF	REV__ENST00000470601.5_1_3:51977371-51978822:+|nuORF	MSMS	A375_MHC_IP_R2	2	509.6709289550781	2	509.719818	1017.42508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.955	1	57.705	57.205	58.205	0.75015								0	0	0	0.15486	1	21532	21532		12.532	2.3482	1		+		12126	16344;25107	8712	8783	11839	11839					-0.08293201691992635
EQAKKSREI	9	Unmodified	_EQAKKSREI_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	A375_MHC_IP_R2	2	545.1787719726562	2	544.806562	1087.59857	-1.0269	-0.00055945	-0.0044177	-2.4068E-06	-1.0313	-0.00056186	544.8067164776744	35.04	0.70689	35.804	35.324	36.03	0.76338					19	13	2	0	0	0	0.61452	1	12631	12631		21.747	0	1	2340600			12127	4099;14587	8713	8784	11840	11840					0.05827628874953916
EQAKKSREI	9	Unmodified	_EQAKKSREI_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MATCH	A375_MHC_IP_R1	1		2	544.806562	1087.59857	-0.37632	-0.00020502	-0.94346	-0.00051401	-1.3198	-0.00071903	545.3071200545602	35.856	0.51078	35.856	35.522	36.033	0	0.02596	-0.00057412	NaN	21.747	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2431600			12128	4099;14587	8713	8784							0.05827628874953916
EQAKLHKTM	9	Unmodified	_EQAKLHKTM_					0	0	0		nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A	nc|ENSG00000066933|B2RTY4-5|MYO9A	nc|ENSG00000066933|B2RTY4-5|MYO9A	MULTI-SECPEP	A375_MHC_IP_R1	1	361.9294738769531	3	362.530581	1084.56991	0.29486	0.0001069	1.4523	0.00052651	1.7472	0.0006334	362.53189177425514	20.532	0.20255	20.532	20.384	20.587	0					5	3	2	0	0	0	0.72623	1	5286	5286		13.615	4.6386	1	218050			12129	1423	8714	8785	11841	11841					0.031011879741527082
EQALPIEAPI	10	Unmodified	_EQALPIEAPI_					0	0	0			REV__ENST00000522138.1_1_5:169064330-169108764:+|nuORF	REV__ENST00000522138.1_1_5:169064330-169108764:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1082.4285888671875	1	1080.59355	1079.58628	0.182	0.00019666	1.4767	0.0015957	1.6587	0.0017923	1080.5969814562286	134.22	0.30954	134.36	134.18	134.49	0.13901					17	5	4	0	0	0	0.27133	1	52768	52768		41.956	9.8386	1	38603000	+		12130	18784	8715	8786	11842	11842					0.04966592411892634
EQALPIEAPI	10	Unmodified	_EQALPIEAPI_					0	0	0			REV__ENST00000522138.1_1_5:169064330-169108764:+|nuORF	REV__ENST00000522138.1_1_5:169064330-169108764:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	1080.59355	1079.58628	-0.1601	-0.000173	1.0199	0.0011021	0.85981	0.0009291	1081.596202013738	134.35	0.40405	134.35	134.12	134.52	0	-0.004924	-0.00030761	NaN	41.956	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41403000	+		12131	18784	8715	8786							0.04966592411892634
EQALPIEAPI	10	Unmodified	_EQALPIEAPI_					0	0	0			REV__ENST00000522138.1_1_5:169064330-169108764:+|nuORF	REV__ENST00000522138.1_1_5:169064330-169108764:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	1080.59355	1079.58628	0.182	0.00019666	1.4767	0.0015957	1.6587	0.0017923	1080.5969814562286	134.22	0.30954	134.36	134.18	134.49	0.13901	0.004924	0.00018596	NaN	41.956	17	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38603000	+		12132	18784	8715	8786							0.04966592411892634
EQAQMLDPY	9	Unmodified	_EQAQMLDPY_					0	0	0		nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7	nc|ENSG00000196510|Q9UJX3-2|ANAPC7	nc|ENSG00000196510|Q9UJX3-2|ANAPC7	MULTI-MSMS	A375_MHC_IP_R1	1	548.1830444335938	2	547.744782	1093.47501	-0.65776	-0.00036028	2.3825	0.001305	1.7248	0.00094472	547.7464335608745	24.523	0.20013	24.523	24.447	24.647	0					5	3	2	0	0	0	0.46038	1	6951	6951		21.747	2.4897	1	1181300			12133	9052	8716	8787	11843	11843					-0.06798790287689371
EQARPSSRRL	10	Unmodified	_EQARPSSRRL_					0	0	0			REV__ENST00000584214.1_1_17:16253243-16256750:-|nuORF	REV__ENST00000584214.1_1_17:16253243-16256750:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	600.7329711914062	2	600.33381	1198.65307	-0.56191	-0.00033733	0.03855	2.3143E-05	-0.52336	-0.00031419	600.3337405910278	128.9	2.3296	129.14	128.45	130.78	0.23946					85	45	2	0	0	0	0.71466	1	50450	50450		5.7319	1.7875	1	70884000	+		12134	20688	8717	8788	11844	11844					0.061686407463867
EQARSFKQL	9	Unmodified	_EQARSFKQL_					0	0	0			REV__ENSG00000011028|ENST00000303375|MRC2	REV__ENSG00000011028|ENST00000303375|MRC2	MULTI-SECPEP	A375_MHC_IP_R2	2	553.7154541015625	2	553.80128	1105.58801	-0.67875	-0.00037589	1.5205	0.00084207	0.84177	0.00046617	553.8013258021143	48.095	0.60402	48.856	48.48	49.084	0.76127					37	11	5	0	0	0	0.47368	1	17995	17995		20.454	2.3186	1	20543000	+		12135	16201	8718	8789	11845	11845					0.03943646220523078
EQAYDLAR	8	Unmodified	_EQAYDLAR_					0	0	0		ENSG00000100804|ENST00000361611|PSMB5;ENST00000493471.2_1_14:23495300-23497005:-|nuORF;nc|ENSG00000100804|P28074-3|PSMB5	ENSG00000100804|ENST00000361611|PSMB5	ENSG00000100804|ENST00000361611|PSMB5	MSMS	A375_MHC_IP_R2	2	483.157958984375	2	483.237981	964.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.292	1	41.066	40.566	41.566	0.77451								0	0	0	0.16876	1	14915	14915		24.674	0	1				12136	2221	8719	8790	11846	11846					-0.022242800046228695
EQDEDAYKKQF	11	Unmodified	_EQDEDAYKKQF_					0	0	0		ENST00000480199.1_1_8:28157565-28157883:+|nuORF	ENST00000480199.1_1_8:28157565-28157883:+|nuORF	ENST00000480199.1_1_8:28157565-28157883:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	467.6146545410156	3	467.549135	1399.62557	-1.0492	-0.00049056	0.87191	0.00040766	-0.1773	-8.2897E-05	467.54937267984127	26.134	0.55912	26.794	26.602	27.161	0.65992					13	10	2	0	0	0	0.61555	2	8867	8812;8867		22.109	18.263	1	3639500			12137	12492	8720	8791	11847;11848	11848					-0.05825352095212111
EQDEDESYY	9	Unmodified	_EQDEDESYY_					0	0	0			REV__ENSG00000242732|ENST00000609883|RTL5	REV__ENSG00000242732|ENST00000609883|RTL5	MSMS	A375_MHC_IP_R2	2	589.2338256835938	2	589.212023	1176.40949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.573	1	68.309	67.809	68.809	0.73631								0	0	0	0.15486	1	25603	25603		4.756	2.6963	1		+		12138	22801	8721	8792	11849	11849					-0.17165532999706556
EQDEQNDDENE	11	Unmodified	_EQDEQNDDENE_					0	0	0			REV__ENSG00000092148|ENST00000399332|HECTD1	REV__ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	A375_MHC_IP_R2	2	682.7308349609375	2	682.739665	1363.46478	-0.43097	-0.00029424	1.9529	0.0013333	1.5219	0.0010391	683.2434605187453	113.35	0.25701	114.06	113.97	114.23	0.70985					6	4	2	0	0	0	0.73672	1	42743	42743		2.4985	0	1	3221800	+		12139	16964	8722	8793	11850	11850					-0.20241771269888886
EQDRWPRGRL	10	Unmodified	_EQDRWPRGRL_					0	0	0			REV__ENST00000420996.2_1_9:102760585-102760876:-|nuORF	REV__ENST00000420996.2_1_9:102760585-102760876:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	438.6331481933594	3	438.233815	1311.67962	-0.44828	-0.00019645	-0.62152	-0.00027237	-1.0698	-0.00046882	438.23355702992444	26.163	0.70913	26.163	25.714	26.423	0					23	13	3	0	0	0	0.36703	1	7763	7763		24.882	0.91741	1	6800800	+		12140	24580	8723	8794	11851	11851					0.03624329637682422
EQDRWPRGRL	10	Unmodified	_EQDRWPRGRL_					0	0	0			REV__ENST00000420996.2_1_9:102760585-102760876:-|nuORF	REV__ENST00000420996.2_1_9:102760585-102760876:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	438.6330871582031	3	438.233815	1311.67962	-0.75447	-0.00033063	-0.80577	-0.00035311	-1.5602	-0.00068375	438.23341419874373	25.559	0.50725	26.219	25.992	26.5	0.65992					16	9	2	0	0	0	0.48529	1	8565	8565		19.626	4.7881	1	8307400	+		12141	24580	8723	8794	11852	11852					0.03624329637682422
EQEAIQDFW	9	Unmodified	_EQEAIQDFW_					0	0	0		ENST00000399556.2_1_2:198244427-198244559:-|nuORF	ENST00000399556.2_1_2:198244427-198244559:-|nuORF	ENST00000399556.2_1_2:198244427-198244559:-|nuORF	MSMS	A375_MHC_IP_R1	1	583.169677734375	2	583.261653	1164.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.046	1	54.046	53.546	54.546	0								0	0	0	0.073358	1	19282	19282		48.346	12.219	1				12142	11542	8724	8795	11853	11853					-0.06692045524278001
EQEENHWHL	9	Unmodified	_EQEENHWHL_					0	0	0			REV__ENST00000341980.10_1_11:111612288-111612779:-|nuORF	REV__ENST00000341980.10_1_11:111612288-111612779:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	408.2474670410156	3	407.847626	1220.52105	0.048494	1.9778E-05	0.59728	0.0002436	0.64577	0.00026338	407.8476369874956	27.598	0.30256	28.276	28.149	28.452	0.67857					10	5	3	0	0	0	0.78348	1	9495	9495		0.96228	0.26461	1	3809500	+		12143	23737	8725	8796	11854	11854					-0.08039009061235447
EQEKKLCMN	9	Unmodified	_EQEKKLCMN_					0	0	0		MYH4|p.D1051N|1|0.78|ENSG00000264424|chr17:10452893-10452893|C/T|missense_variant	MYH4|p.D1051N|1|0.78|ENSG00000264424|chr17:10452893-10452893|C/T|missense_variant	MYH4|p.D1051N|1|0.78|ENSG00000264424|chr17:10452893-10452893|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	561.67724609375	2	561.767734	1121.52091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.403	1	71.403	70.903	71.903	0								0	0	0	0.15142	1	25941	25941		19.257	5.3509	1				12144	14433	8726	8797	11855	11855					-0.03498468377097197
EQELRQLLH	9	Unmodified	_EQELRQLLH_					0	0	0		nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7;ENST00000425451.2_1_12:48189548-48213588:-|nuORF	nc|ENSG00000061273|Q8WUI4-3|HDAC7	nc|ENSG00000061273|Q8WUI4-3|HDAC7	MULTI-SECPEP	A375_MHC_IP_R2	2	583.21630859375	2	583.319837	1164.62512	-0.94414	-0.00055074	0.65537	0.00038229	-0.28877	-0.00016845	583.3189034653261	53.472	0.35797	54.223	54.147	54.505	0.75105					9	6	2	0	0	0	0.65623	1	20259	20259		25.399	0	1	2041500			12145	1318	8727	8798	11856	11856					0.04939317766275053
EQERLLKERFE	11	Unmodified	_EQERLLKERFE_					0	0	0		ENST00000394662.2_1_1:89889857-89891799:+|nuORF	ENST00000394662.2_1_1:89889857-89891799:+|nuORF	ENST00000394662.2_1_1:89889857-89891799:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	492.45074462890625	3	492.93169	1475.77324	-0.58158	-0.00028668	-0.30827	-0.00015195	-0.88984	-0.00043863	492.9316289300635	30.868	0.40623	30.868	30.703	31.109	0					14	7	3	0	0	0	1.0007	1	9786	9786		1.0136	0.55906	1	1746500			12146	11456	8728	8799	11857	11857					0.05438584229455046
EQERLLKERFE	11	Unmodified	_EQERLLKERFE_					0	0	0		ENST00000394662.2_1_1:89889857-89891799:+|nuORF	ENST00000394662.2_1_1:89889857-89891799:+|nuORF	ENST00000394662.2_1_1:89889857-89891799:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	492.93169	1475.77324	-0.62756	-0.00030935	0.48813	0.00024061	-0.13943	-6.8731E-05	492.93187943095074	30.19	0.40588	30.909	30.658	31.064	0.71857	0.020445	0.00094289	NaN	1.0136	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1215800			12147	11456	8728	8799							0.05438584229455046
EQERQSRS	8	Unmodified	_EQERQSRS_					0	0	0			REV__nc|ENSG00000095066|Q96ED9-2|HOOK2	REV__nc|ENSG00000095066|Q96ED9-2|HOOK2	MSMS	A375_MHC_IP_R2	2	510.2035217285156	2	510.246869	1018.47918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.97	1	133.14	132.64	133.64	0.16487								0	0	0	0.16876	1	52313	52313		4.3292	0	1		+		12148	16988	8729	8800	11858	11858					-0.0293156474974694
EQERRRWQ	8	Unmodified	_EQERRRWQ_					0	0	0		ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	MULTI-SECPEP	A375_MHC_IP_R1	1	594.6643676757812	2	594.305052	1186.59555	-0.36328	-0.0002159	2.7968	0.0016622	2.4335	0.0014463	594.3072601984136	42.114	0.30187	42.114	41.932	42.233	0					9	5	2	0	0	0	0.972	1	14515	14515		2.0598	0.98829	1	1179500			12149	6372	8730	8801	11859	11859					0.00971798540808777
EQERVYEW	8	Unmodified	_EQERVYEW_					0	0	0		ENSG00000141664|ENST00000269499|ZCCHC2	ENSG00000141664|ENST00000269499|ZCCHC2	ENSG00000141664|ENST00000269499|ZCCHC2	MSMS	A375_MHC_IP_R1	1	569.681884765625	2	569.76182	1137.50909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.871	1	58.871	58.371	59.371	0								0	0	0	0.16876	1	21158	21158		23.148	3.7094	1				12150	5266	8731	8802	11860	11860					-0.05416625804446085
EQESLIKVLW	10	Unmodified	_EQESLIKVLW_					0	0	0			REV__UPF1|p.P246L|1|0.38|ENSG00000005007|chr19:18850795-18850795|C/T|missense_variant	REV__UPF1|p.P246L|1|0.38|ENSG00000005007|chr19:18850795-18850795|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	415.60443115234375	3	415.567689	1243.68124	0.36745	0.0001527	0.72059	0.00029945	1.088	0.00045215	415.5680991529801	35.038	0.30616	35.038	34.912	35.218	0					8	5	2	0	0	0	0.71693	1	11653	11653		4.7159	4.7159	1	1750300	+		12151	28958	8732	8803	11861	11861					0.06914525883098577
EQESLIKVLW	10	Unmodified	_EQESLIKVLW_					0	0	0			REV__UPF1|p.P246L|1|0.38|ENSG00000005007|chr19:18850795-18850795|C/T|missense_variant	REV__UPF1|p.P246L|1|0.38|ENSG00000005007|chr19:18850795-18850795|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	415.567689	1243.68124	0.36745	0.0001527	0.72059	0.00029945	1.088	0.00045215	415.5680991529801	35.038	0.30616	35.038	34.912	35.218	0	0	0	NaN	4.7159	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1750300	+		12152	28958	8732	8803							0.06914525883098577
EQETKLEWI	9	Unmodified	_EQETKLEWI_					0	0	0		nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40	nc|ENSG00000108406|Q8IX18-4|DHX40	nc|ENSG00000108406|Q8IX18-4|DHX40	MULTI-SECPEP	A375_MHC_IP_R2	2	588.4013671875	2	588.300778	1174.587	-0.57113	-0.000336	-1.5586	-0.00091691	-2.1297	-0.0012529	588.8013384712287	74.16	0.50724	74.898	74.553	75.06	0.73751					13	9	2	0	0	0	0.73363	1	28058	28058		10.824	0	1	1376200			12153	2799	8733	8804	11862	11862					0.006693870609524311
EQFAQNGWPV	10	Unmodified	_EQFAQNGWPV_					0	0	0			REV__ENST00000371817.7_1_9:137659174-137671969:+|nuORF	REV__ENST00000371817.7_1_9:137659174-137671969:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	588.1983032226562	2	588.277638	1174.54072	-0.54437	-0.00032024	-0.91698	-0.00053944	-1.4614	-0.00085968	588.2767212276368	73.796	1.1712	74.532	73.836	75.007	0.73569					26	22	2	0	0	0	0.63639	1	28147	28147		18.146	0.7037	1	1283300	+		12154	24053	8734	8805	11863	11863					-0.03956633050484015
EQFDEPAEFSG	11	Unmodified	_EQFDEPAEFSG_					0	0	0			REV__DNAH1|p.V141A|1|0.38|ENSG00000114841|chr3:52326155-52326155|T/C|missense_variant	REV__DNAH1|p.V141A|1|0.38|ENSG00000114841|chr3:52326155-52326155|T/C|missense_variant	MSMS	A375_MHC_IP_R1	1	628.1744384765625	2	628.259308	1254.50406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.717	1	46.717	46.217	47.217	0								0	0	0	0.15694	1	16406	16406		16.149	0	1		+		12155	16003	8735	8806	11864	11864					-0.11300974457731172
EQFDNPIY	8	Unmodified	_EQFDNPIY_					0	0	0			REV__tr|U7T3P5|U7T3P5_FUSNUPhospho-2-dehydro-3-deoxyheptonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00192PE=4SV=1	REV__tr|U7T3P5|U7T3P5_FUSNUPhospho-2-dehydro-3-deoxyheptonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00192PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	512.689208984375	2	513.232364	1024.45018	-0.7073	-0.00036301	-3.6434	-0.0018699	-4.3507	-0.0022329	513.2306575177487	73.573	0.61215	74.308	73.887	74.499	0.7354					15	11	2	0	0	0	0.93416	1	27858	27858		5.2307	0	1	603780	+		12156	28782	8736	8807	11865	11865					-0.06107102098746964
EQFFKRRDEEI	11	Unmodified	_EQFFKRRDEEI_					0	0	0			REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MSMS	A375_MHC_IP_R1	1	499.4854431152344	3	499.587924	1495.74194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.506	1	62.506	62.006	63.006	0								0	0	0	0.16275	1	22577	22577		4.4062	3.0765	1		+		12157	18096	8737	8808	11866	11866					0.013900111954171734
EQFLAGRFTL	10	Unmodified	_EQFLAGRFTL_					0	0	0			REV__ERCC4|p.S771F|1|0.41|ENSG00000175595|chr16:13947908-13947908|C/T|missense_variant	REV__ERCC4|p.S771F|1|0.41|ENSG00000175595|chr16:13947908-13947908|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	394.9483642578125	3	394.548629	1180.62406	0.0005066	1.9988E-07	2.5252	0.00099633	2.5257	0.00099653	394.54865266508796	73.34	0.45647	73.34	73.031	73.488	0					31	8	5	0	0	0	0.69306	1	26676	26676		12.175	6.6515	1	6048900	+		12158	26589	8738	8809	11867	11867					0.040971033973846716
EQFLAGRFTL	10	Unmodified	_EQFLAGRFTL_					0	0	0			REV__ERCC4|p.S771F|1|0.41|ENSG00000175595|chr16:13947908-13947908|C/T|missense_variant	REV__ERCC4|p.S771F|1|0.41|ENSG00000175595|chr16:13947908-13947908|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	394.9487609863281	3	394.548629	1180.62406	-0.29565	-0.00011665	2.9141	0.0011498	2.6185	0.0010331	394.54865366036324	72.473	0.70881	73.209	72.771	73.48	0.73541					37	13	5	0	0	0	0.62155	1	27482	27482		12.175	3.423	1	3686300	+		12159	26589	8738	8809	11868	11868					0.040971033973846716
EQFLAGRFTL	10	Unmodified	_EQFLAGRFTL_					0	0	0			REV__ERCC4|p.S771F|1|0.41|ENSG00000175595|chr16:13947908-13947908|C/T|missense_variant	REV__ERCC4|p.S771F|1|0.41|ENSG00000175595|chr16:13947908-13947908|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	394.548629	1180.62406	0.0005066	1.9988E-07	2.5252	0.00099633	2.5257	0.00099653	394.54865266508796	73.34	0.45647	73.34	73.031	73.488	0	0.065812	-0.00021815	NaN	12.175	31	8	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6048900	+		12160	26589	8738	8809							0.040971033973846716
EQFLAGRFTL	10	Unmodified	_EQFLAGRFTL_					0	0	0			REV__ERCC4|p.S771F|1|0.41|ENSG00000175595|chr16:13947908-13947908|C/T|missense_variant	REV__ERCC4|p.S771F|1|0.41|ENSG00000175595|chr16:13947908-13947908|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	394.548629	1180.62406	-0.29565	-0.00011665	2.9141	0.0011498	2.6185	0.0010331	394.54865366036324	72.473	0.70881	73.209	72.771	73.48	0.73541	-0.065812	0.00024213	NaN	12.175	37	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3686300	+		12161	26589	8738	8809							0.040971033973846716
EQFLDLRRYRN	11	Unmodified	_EQFLDLRRYRN_					0	0	0			REV__PBRM1|p.E1214Rfs*6|1|0.21|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant	REV__PBRM1|p.E1214Rfs*6|1|0.21|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant	MSMS	A375_MHC_IP_R1	1	503.990966796875	3	503.935546	1508.78481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.702	1	26.702	26.202	27.202	0								0	0	0	0.16291	1	7997	7997		3.5927	3.1382	1		+		12162	20428	8739	8810	11869	11869					0.05076826043477922
EQFLSTYFE	9	Unmodified	_EQFLSTYFE_					0	0	0			REV__nc|ENSG00000170471|Q86X10-2|RALGAPB;REV__nc|ENSG00000170471|Q86X10-4|RALGAPB	REV__nc|ENSG00000170471|Q86X10-2|RALGAPB	MULTI-MSMS	A375_MHC_IP_R2	2	583.7029418945312	2	582.266404	1162.51826	-0.38148	-0.00022212	0.023546	1.371E-05	-0.35793	-0.00020841	582.2663333712561	77.345	2.5901	78.088	77.354	79.944	0.74293					133	50	6	0	0	0	0.46038	1	29273	29273		21.747	3.6003	1	96265000	+		12163	20997;27352	8740	8811	11870	11870					-0.05650277238783019
EQFRNYDIWTW	11	Unmodified	_EQFRNYDIWTW_					0	0	0			REV__ENSG00000198874|ENST00000359626|TYW1	REV__ENSG00000198874|ENST00000359626|TYW1	MULTI-MSMS	A375_MHC_IP_R2	2	779.7579345703125	2	779.35969	1556.70483	-1.0249	-0.00079879	-0.64183	-0.00050021	-1.6668	-0.001299	779.3591984049527	74.983	0.2521	75.72	75.57	75.822	0.73751					11	4	3	0	0	0	0.73809	1	28461	28461		1.1933	0	1	3168700	+		12164	22436	8741	8812	11871	11871					-0.051256603504043596
EQFSEDIWA	9	Unmodified	_EQFSEDIWA_					0	0	0		FGGY|p.S54F|1|0.27|ENSG00000172456|chr1:59321710-59321710|C/T|missense_variant	FGGY|p.S54F|1|0.27|ENSG00000172456|chr1:59321710-59321710|C/T|missense_variant	FGGY|p.S54F|1|0.27|ENSG00000172456|chr1:59321710-59321710|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	562.6708374023438	2	562.748379	1123.4822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.908	1	80.653	80.153	81.153	0.74474								0	0	0	0.15486	1	30334	30334		12.532	0.89125	1				12165	13999	8742	8813	11872	11872					-0.07459734415601815
EQFYEDFMS	9	Unmodified	_EQFYEDFMS_					0	0	0			REV__ENSG00000111231|ENST00000228827|GPN3	REV__ENSG00000111231|ENST00000228827|GPN3	MULTI-MSMS	A375_MHC_IP_R2	2	399.5591125488281	3	399.15859	1194.45394	0.05891	2.3515E-05	0.70236	0.00028035	0.76127	0.00030387	399.1587583369784	101.14	0.56102	101.9	101.65	102.21	0.76428					21	10	3	0	0	0	0.72985	1	38321	38321		2.4985	0.41248	1	1728000	+		12166	17655	8743	8814	11873	11873					-0.13550800387224626
EQGATDYQW	9	Unmodified	_EQGATDYQW_					0	0	0			REV__nc|ENSG00000099246|Q9NP72-2|RAB18	REV__nc|ENSG00000099246|Q9NP72-2|RAB18	MULTI-SECPEP	A375_MHC_IP_R1	1	548.66357421875	2	549.230353	1096.44615	-0.19516	-0.00010719	-0.78048	-0.00042866	-0.97564	-0.00053585	549.2301642920747	112.66	0.30666	112.66	112.38	112.69	0					7	5	2	0	0	0	0.78348	1	41196	41196		4.3292	4.3292	1	1109000	+		12167	27140	8744	8815	11874	11874					-0.098211915924594
EQGEDQLKL	9	Unmodified	_EQGEDQLKL_					0	0	0			REV__nc|ENSG00000185745|P09914-2|IFIT1	REV__nc|ENSG00000185745|P09914-2|IFIT1	MULTI-MSMS	A375_MHC_IP_R1	1	530.1952514648438	2	530.269478	1058.5244	-0.092108	-4.8842E-05	0.97331	0.00051611	0.8812	0.00046727	530.2697572669083	48.913	0.45534	48.913	48.629	49.084	0					13	8	2	0	0	0	0.4867	1	17204	17204		20.454	2.3073	1	1524900	+		12168	21916	8745	8816	11875	11875					-0.0025175900723297673
EQGHQFLR	8	Unmodified	_EQGHQFLR_					0	0	0		ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	MULTI-SECPEP	A375_MHC_IP_R2	2	508.1350402832031	2	507.759415	1013.50428	-0.78513	-0.00039866	-1.3273	-0.00067397	-2.1125	-0.0010726	507.7584207251884	32.484	0.35636	33.22	33.061	33.417	0.73691					15	6	3	0	0	0	0.95423	1	11633	11633		12.532	0	1	1977200			12169	9738	8746	8817	11876	11876					-0.0019346515654206087
EQGHQFLR	8	Unmodified	_EQGHQFLR_					0	0	0		ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	MULTI-MATCH	A375_MHC_IP_R1	1		2	507.759415	1013.50428	-0.47973	-0.00024359	-1.5903	-0.00080746	-2.07	-0.0010511	507.7586817599473	33.216	0.40414	33.216	32.938	33.342	0	-0.0023979	-0.0001044	NaN	12.532	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2440600			12170	9738	8746	8817							-0.0019346515654206087
EQGLVALTAYS	11	Unmodified	_EQGLVALTAYS_					0	0	0		nc|ENSG00000168334|Q702N8-2|XIRP1;ENSG00000168334|ENST00000340369|XIRP1	nc|ENSG00000168334|Q702N8-2|XIRP1	nc|ENSG00000168334|Q702N8-2|XIRP1	MULTI-MSMS	A375_MHC_IP_R2	2	384.9361572265625	3	384.536278	1150.587	-0.41607	-0.00015999	0.24651	9.4793E-05	-0.16956	-6.5201E-05	384.53630972153115	23.424	0.30218	24.054	23.878	24.18	0.63014					12	5	3	0	0	0	0.70919	1	7539	7539		14.838	3.9389	1	17111000			12171	7290	8747	8818	11877	11877					0.01773387060939058
EQGPLRLI	8	Unmodified	_EQGPLRLI_					0	0	0		ENSG00000217128|ENST00000510461|FNIP1;nc|ENSG00000217128|Q8TF40-2|FNIP1	ENSG00000217128|ENST00000510461|FNIP1	ENSG00000217128|ENST00000510461|FNIP1	MULTI-SECPEP	A375_MHC_IP_R1	1	463.6764831542969	2	463.276909	924.539266	-0.19476	-9.0229E-05	-0.67609	-0.00031322	-0.87085	-0.00040345	463.27664029814434	73.168	0.60764	73.168	72.779	73.386	0					25	11	3	0	0	0	0.95423	1	26595	26595		18.135	12.375	1	3300700			12172	9653	8748	8819	11878	11878					0.07397777651419801
EQGPLRLI	8	Unmodified	_EQGPLRLI_					0	0	0		ENSG00000217128|ENST00000510461|FNIP1;nc|ENSG00000217128|Q8TF40-2|FNIP1	ENSG00000217128|ENST00000510461|FNIP1	ENSG00000217128|ENST00000510461|FNIP1	MULTI-SECPEP	A375_MHC_IP_R2	2	463.6763000488281	2	463.276909	924.539266	-0.76991	-0.00035668	-0.49688	-0.00023019	-1.2668	-0.00058687	463.2766577278461	72.093	0.65778	72.827	72.516	73.174	0.73421					26	12	3	0	0	0	0.97021	1	27350	27350		15.847	1.0089	1	2982300			12173	9653	8748	8819	11879	11879					0.07397777651419801
EQGPRLQAI	9	Unmodified	_EQGPRLQAI_					0	0	0			REV__nc|ENSG00000171453|O15160-2|POLR1C	REV__nc|ENSG00000171453|O15160-2|POLR1C	MULTI-SECPEP	A375_MHC_IP_R2	2	506.18487548828125	2	506.282723	1010.55089	-0.65579	-0.00033202	0.11026	5.5822E-05	-0.54553	-0.00027619	506.2827934946605	42.803	0.50665	43.576	43.268	43.775	0.7724					15	9	2	0	0	0	0.55359	1	15900	15900		21.747	8.7042	1	2737900	+		12174	21065	8749	8820	11880	11880					0.04603974674739675
EQGPRLQAI	9	Unmodified	_EQGPRLQAI_					0	0	0			REV__nc|ENSG00000171453|O15160-2|POLR1C	REV__nc|ENSG00000171453|O15160-2|POLR1C	MULTI-MATCH	A375_MHC_IP_R1	1		2	506.282723	1010.55089	-0.39016	-0.00019753	-0.77696	-0.00039336	-1.1671	-0.00059089	506.2822321026775	43.833	0.35498	43.833	43.655	44.01	0	0.12886	-0.00028282	NaN	15.847	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2400400	+		12175	21065	8749	8820							0.04603974674739675
EQGQTLVPHS	10	Unmodified	_EQGQTLVPHS_					0	0	0			REV__ENSG00000185267|ENST00000465530|CDNF	REV__ENSG00000185267|ENST00000465530|CDNF	MULTI-SECPEP	A375_MHC_IP_R2	2	547.6558837890625	2	548.275095	1094.53564	-0.87986	-0.0004824	-1.8114	-0.00099312	-2.6912	-0.0014755	548.2737951176066	97.829	0.66176	98.585	98.178	98.84	0.75587					17	12	2	0	0	0	0.79457	1	37002	37002		10.8	1.2555	1	1339700	+		12176	21883	8750	8821	11881	11881					-0.007849369131008643
EQGRIFPLY	9	Unmodified	_EQGRIFPLY_					0	0	0			REV__ENSG00000257743|ENST00000477922|MGAM2	REV__ENSG00000257743|ENST00000477922|MGAM2	MULTI-SECPEP	A375_MHC_IP_R1	1	562.1434326171875	2	561.800749	1121.58694	-0.42758	-0.00024022	0.81815	0.00045964	0.39057	0.00021942	561.8011848805743	88.033	0.61125	88.033	87.747	88.358	0					17	11	2	0	0	0	0.65246	1	32431	32431		10.824	0	1	1555500	+		12177	22893	8751	8822	11882	11882					0.031014318516099593
EQGTVPGFIGF	11	Unmodified	_EQGTVPGFIGF_					0	0	0		nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-2|LTN1	nc|ENSG00000198862|O94822-3|LTN1	nc|ENSG00000198862|O94822-3|LTN1	MULTI-SECPEP	A375_MHC_IP_R1	1	383.94390869140625	3	384.529235	1150.56587	-0.042802	-1.6459E-05	3.5473	0.001364	3.5045	0.0013476	384.8641770164833	26.175	0.25399	26.175	26.068	26.322	0					5	4	2	0	0	0	0.90584	1	7759	7759		13.519	3.9747	1	767820			12178	9354	8752	8823	11883	11883					-0.0033857824789720325
EQHFQHGGY	9	Unmodified	_EQHFQHGGY_					0	0	0		ENSG00000119812|ENST00000238823|FAM98A;ENST00000474985.5_1_2:33809845-33813599:-|nuORF	ENSG00000119812|ENST00000238823|FAM98A	ENSG00000119812|ENST00000238823|FAM98A	MSMS	A375_MHC_IP_R1	1	551.6585693359375	2	551.73868	1101.46281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.639	1	75.639	75.139	76.139	0								0	0	0	0.14359	1	27560	27560		28.487	3.813	1				12179	3625	8753	8824	11884	11884					-0.08386645915857116
EQHNQHICV	9	Unmodified	_EQHNQHICV_					0	0	0			REV__ENSG00000254656|ENST00000649591|RTL1	REV__ENSG00000254656|ENST00000649591|RTL1	MULTI-MSMS	A375_MHC_IP_R2	2	554.6928100585938	2	554.25364	1106.49273	-0.79267	-0.00043934	2.6769	0.0014837	1.8842	0.0010443	554.2555195013506	31.758	0.3539	32.495	32.35	32.704	0.73691					8	6	2	0	0	0	0.4867	1	11281	11281		20.454	0	1	1568700	+		12180	22865	8754	8825	11885	11885					-0.05626030242183333
EQHTVCHFF	9	Unmodified	_EQHTVCHFF_					0	0	0		DISP1|p.V1395Cfs*18|1|0.06|ENSG00000154309|chr1:223005576-223005577|-/T|frameshift_variant;ENSG00000154309|ENST00000675850|DISP1	DISP1|p.V1395Cfs*18|1|0.06|ENSG00000154309|chr1:223005576-223005577|-/T|frameshift_variant	DISP1|p.V1395Cfs*18|1|0.06|ENSG00000154309|chr1:223005576-223005577|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	383.5713195800781	3	383.171164	1146.49166	0.3015	0.00011552	-0.0088883	-3.4057E-06	0.29261	0.00011212	383.1711069215273	42.057	0.60929	42.057	41.777	42.386	0					20	11	3	0	0	0	0.77396	1	14575	14575		3.8763	2.2841	1	9164400			12181	748	8755	8826	11886	11886					-0.07572244611083079
EQIDEEYLQSF	11	Unmodified	_EQIDEEYLQSF_					0	0	0			REV__ENST00000562317.1_1_16:78082520-78083381:-|nuORF	REV__ENST00000562317.1_1_16:78082520-78083381:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	701.2144165039062	2	700.814447	1399.61434	-0.47689	-0.00033421	1.0219	0.00071616	0.54501	0.00038195	700.8152022519595	71.154	0.41048	71.154	70.953	71.364	0					12	7	2	0	0	0	0.26393	1	25875	25875		49.527	29.113	1	1471500	+		12182	26186	8756	8827	11887	11887					-0.069481741893469
EQIDEEYLQSF	11	Unmodified	_EQIDEEYLQSF_					0	0	0			REV__ENST00000562317.1_1_16:78082520-78083381:-|nuORF	REV__ENST00000562317.1_1_16:78082520-78083381:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	700.814447	1399.61434	-0.47689	-0.00033421	1.0219	0.00071616	0.54501	0.00038195	700.8152022519595	71.154	0.41048	71.154	70.953	71.364	0	-0.10548	-6.447E-05	NaN	49.527	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1471500	+		12183	26186	8756	8827							-0.069481741893469
EQIDEEYLQSF	11	Unmodified	_EQIDEEYLQSF_					0	0	0			REV__ENST00000562317.1_1_16:78082520-78083381:-|nuORF	REV__ENST00000562317.1_1_16:78082520-78083381:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	700.814447	1399.61434	-0.70517	-0.00049419	1.3695	0.00095977	0.66433	0.00046557	700.8156704509194	70.631	0.3539	71.365	71.149	71.503	0.73421	0.10548	0.00042274	NaN	49.527	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2641200	+		12184	26186	8756	8827							-0.069481741893469
EQIKKVYQ	8	Unmodified	_EQIKKVYQ_					0	0	0			REV__ENSG00000132854|ENST00000371153|KANK4	REV__ENSG00000132854|ENST00000371153|KANK4	MULTI-MSMS	A375_MHC_IP_R2	2	1036.61669921875	1	1035.58332	1034.57605	-0.27583	-0.00028565	-0.14407	-0.0001492	-0.4199	-0.00043484	1035.5828897535846	61.35	0.40222	62.095	61.97	62.372	0.74503					13	7	2	0	0	0	0.77624	1	23239	23239		8.5933	2.3875	1	2094100	+		12185	18688	8757	8828	11888	11888					0.06014029477319127
EQIKKVYQ	8	Unmodified	_EQIKKVYQ_					0	0	0			REV__ENSG00000132854|ENST00000371153|KANK4	REV__ENSG00000132854|ENST00000371153|KANK4	MULTI-MATCH	A375_MHC_IP_R1	1		1	1035.58332	1034.57605	0.2486	0.00025744	-0.59686	-0.0006181	-0.34826	-0.00036066	1035.5824203762413	62.254	0.35772	62.254	62.046	62.403	0	0.079434	-0.00021219	NaN	8.5933	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2496100	+		12186	18688	8757	8828							0.06014029477319127
EQIKKVYQ	8	Unmodified	_EQIKKVYQ_					0	0	0			REV__ENSG00000132854|ENST00000371153|KANK4	REV__ENSG00000132854|ENST00000371153|KANK4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	1035.58332	1034.57605	-0.27583	-0.00028565	-0.14407	-0.0001492	-0.4199	-0.00043484	1035.5828897535846	61.35	0.40222	62.095	61.97	62.372	0.74503	-0.079434	0.00025671	NaN	8.5933	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2094100	+		12187	18688	8757	8828							0.06014029477319127
EQILDFSHC	9	Unmodified	_EQILDFSHC_					0	0	0			REV__ENST00000334003.11_1_7:76959552-77026708:-|nuORF	REV__ENST00000334003.11_1_7:76959552-77026708:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	546.6761474609375	2	546.244949	1090.47534	-0.63109	-0.00034473	0.84246	0.00046019	0.21138	0.00011546	546.2456249811568	94.403	2.0325	94.403	93.433	95.465	0					64	39	2	0	0	0	0.61998	1	34931	34931		13.906	0	1	1959300	+		12188	21944	8758	8829	11889	11889					-0.06627370567821345
EQINGASI	8	Unmodified	_EQINGASI_					0	0	0			REV__nc|ENSG00000124126|Q8TCU6-3|PREX1	REV__nc|ENSG00000124126|Q8TCU6-3|PREX1	MSMS	A375_MHC_IP_R1	1	416.1529846191406	2	416.213975	830.413397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.484	1	51.484	50.984	51.984	0								0	0	0	0.16876	1	18276	18276		24.674	2.9272	1		+		12189	18272	8759	8830	11890	11890					-0.008593539246589899
EQIQDDCTGD	10	Unmodified	_EQIQDDCTGD_					0	0	0		ENSG00000084674|ENST00000233242|APOB;APOB|p.F2409Lfs*15|1|0.3|ENSG00000084674|chr2:21009641-21009641|A/-|frameshift_variant	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-MSMS	A375_MHC_IP_R1	1	562.1875	2	562.214043	1122.41353	-0.63877	-0.00035912	2.0122	0.0011313	1.3735	0.00077219	562.2156749174129	66.324	0.55791	66.324	66.022	66.58	0					22	10	3	0	0	0	0.67512	1	24107	24107		15.248	0.41021	1	2249600			12190	1799	8760	8831	11891	11891					-0.1427776677762722
EQIYKTYLNQY	11	Unmodified	_EQIYKTYLNQY_					0	0	0		tr|U7T3P7|U7T3P7_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00486PE=4SV=1	tr|U7T3P7|U7T3P7_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00486PE=4SV=1	tr|U7T3P7|U7T3P7_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00486PE=4SV=1	MSMS	A375_MHC_IP_R1	1	731.5438232421875	2	731.864274	1461.714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.127	1	90.127	89.627	90.627	0								0	0	0	0.15884	1	33119	33119		14.957	2.0846	1				12191	29982	8761	8832	11892	11892					0.0016068821528278932
EQKAAITDNY	10	Unmodified	_EQKAAITDNY_					0	0	0			REV__ENSG00000178750|ENST00000315099|STX19	REV__ENSG00000178750|ENST00000315099|STX19	MULTI-MSMS	A375_MHC_IP_R1	1	577.6942138671875	2	576.78021	1151.54587	-0.097205	-5.6066E-05	-0.020723	-1.1952E-05	-0.11793	-6.8018E-05	576.780175209038	39.314	0.6093	39.314	39.085	39.694	0					33	11	4	0	0	0	0.57505	1	13510	13510		22.736	0.078198	1	37601000	+		12192	21516	8762	8833	11893	11893					-0.02384373978543408
EQKEPFEKL	9	Unmodified	_EQKEPFEKL_					0	0	0			REV__ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant	REV__ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	383.94390869140625	3	383.20464	1146.59209	-0.54265	-0.00020795	0.14764	5.6575E-05	-0.39501	-0.00015137	383.20474207597664	25.409	1.019	26.053	25.465	26.483	0.64368					65	19	4	0	0	0	0.24548	1	8487	8487		33.445	0	1	28532000	+		12193	20170	8763	8834	11894	11894					0.024656909235773128
EQKFEKFTF	9	Unmodified	_EQKFEKFTF_					0	0	0		tr|U7SSR3|U7SSR3_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01351PE=3SV=1	tr|U7SSR3|U7SSR3_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01351PE=3SV=1	tr|U7SSR3|U7SSR3_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01351PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	602.7396850585938	2	602.305864	1202.59717	-0.43453	-0.00026172	-0.74204	-0.00044694	-1.1766	-0.00070866	602.3057482728431	70.506	0.55849	71.24	70.844	71.402	0.73421					14	10	2	0	0	0	0.74412	1	26689	26689		14.838	1.2234	1	1821600			12194	29646	8764	8835	11895	11895					0.0039799478618078865
EQKGHVHIG	9	Unmodified	_EQKGHVHIG_					0	0	0			REV__ENST00000467497.6_1_9:3855970-4118001:-|nuORF	REV__ENST00000467497.6_1_9:3855970-4118001:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	503.3104248046875	2	502.76724	1003.51993	-0.65691	-0.00033027	2.6002	0.0013073	1.9433	0.00097703	502.7688775714382	23.728	0.30475	23.728	23.584	23.889	0					11	5	3	0	0	0	0.58047	1	6551	6551		15.847	1.0089	1	3835400	+		12195	25057	8765	8836	11896	11896					0.0183082136052235
EQKGIRFK	8	Unmodified	_EQKGIRFK_					0	0	0			REV__nc|ENSG00000119782|P68106-2|FKBP1B	REV__nc|ENSG00000119782|P68106-2|FKBP1B	MULTI-MSMS	A375_MHC_IP_R2	2	503.6953430175781	2	503.295633	1004.57671	-0.45956	-0.0002313	0.16091	8.0984E-05	-0.29865	-0.00015031	503.29570812097114	142.66	1.2662	142.69	141.98	143.24	0.030731					37	24	2	0	0	0	0.77741	1	55789	55789		4.3292	2.0265	1	1878100	+		12196	18097	8766	8837	11897	11897					0.07460868917041807
EQKPIQIKSY	10	Unmodified	_EQKPIQIKSY_					0	0	0			REV__nc|ENSG00000001631|O00522-2|KRIT1	REV__nc|ENSG00000001631|O00522-2|KRIT1	MSMS	A375_MHC_IP_R1	1	617.267822265625	2	617.34552	1232.67649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.72	1	106.72	106.22	107.22	0								0	0	0	0.15332	1	39168	39168		10.074	0	1		+		12197	16086	8767	8838	11898	11898					0.06945641740321662
EQKQLFDQI	9	Unmodified	_EQKQLFDQI_					0	0	0			REV__ENSG00000001626|ENST00000003084|CFTR	REV__ENSG00000001626|ENST00000003084|CFTR	MULTI-SECPEP	A375_MHC_IP_R2	2	574.1054077148438	2	574.800946	1147.58734	-0.11907	-6.8441E-05	0.25582	0.00014704	0.13675	7.8604E-05	574.8005614683641	91.925	0.5063	92.664	92.329	92.836	0.73902					26	9	4	0	0	0	0.65527	1	34902	34902		22.736	4.6013	1	4455200	+		12198	16084	8768	8839	11899	11899					0.019448067808070846
EQKQLFDQI	9	Unmodified	_EQKQLFDQI_					0	0	0			REV__ENSG00000001626|ENST00000003084|CFTR	REV__ENSG00000001626|ENST00000003084|CFTR	MULTI-MATCH	A375_MHC_IP_R1	1		2	574.800946	1147.58734	0.05653	3.2493E-05	0.20943	0.00012038	0.26596	0.00015287	574.8006173427536	92.68	0.66074	92.68	92.362	93.023	0	0.0076405	-1.8802E-05	NaN	22.736	31	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4265300	+		12199	16084	8768	8839							0.019448067808070846
EQKRAWTQ	8	Unmodified	_EQKRAWTQ_					0	0	0			REV__SPTBN5|p.Q2777Rfs*33|1|0.22|ENSG00000137877|chr15:41857606-41857609|CTGG/-|frameshift_variant	REV__SPTBN5|p.Q2777Rfs*33|1|0.22|ENSG00000137877|chr15:41857606-41857609|CTGG/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	523.6691284179688	2	523.772522	1045.53049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.866	1	47.866	47.366	48.366	0								0	0	0	0.16876	1	16855	16855		24.021	5.8856	1		+		12200	19047	8769	8840	11900	11900					0.009548040149411463
EQKWLIRMIIK	11	Unmodified	_EQKWLIRMIIK_					0	0	0		ENSG00000174405|ENST00000442234|LIG4;LIG4|p.L242Ifs*5|1|0.23|ENSG00000174405|chr13:108210544-108210545|AA/-|frameshift_variant	ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	MSMS	A375_MHC_IP_R2	2	486.6850280761719	3	486.626885	1456.85883	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.03	1	136.15	135.65	136.65	0.11134								0	0	0	0.16316	1	53450	53450		2.2527	1.7468	1				12201	7874	8770	8841	11901	11901					0.1486707788142212
EQLASWTPY	9	Unmodified	_EQLASWTPY_					0	0	0		ENSG00000167173|ENST00000394987|C15orf39;nc|nan|Q6ZRI6-2|C15orf39	ENSG00000167173|ENST00000394987|C15orf39	ENSG00000167173|ENST00000394987|C15orf39	MULTI-MSMS	A375_MHC_IP_R2	2	548.2059936523438	2	547.761289	1093.50803	-0.72246	-0.00039573	-0.13422	-7.352E-05	-0.85668	-0.00046925	547.7612088999969	104.73	0.91588	105.49	105.11	106.02	0.76308					40	17	3	0	0	0	0.22528	1	39531	39531		36.127	0.082828	1	9293200			12202	7163	8771	8842	11902	11902					-0.034988401733244245
EQLEEIEKLY	10	Unmodified	_EQLEEIEKLY_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	A375_MHC_IP_R1	1	431.9407958984375	3	431.890609	1292.65	-0.22107	-9.5477E-05	-1.2759	-0.00055105	-1.497	-0.00064653	431.89063131660504	33.294	1.0631	33.294	32.585	33.648	0					22	20	2	0	0	0	0.71076	1	10699	10699		7.4771	0.85361	1	2827000			12203	1262	8772	8843	11903	11903					0.015379080583443283
EQLEELLPHQG	11	Unmodified	_EQLEELLPHQG_					0	0	0			REV__ACVR2B|p.S423L|1|0.14|ENSG00000114739|chr3:38482484-38482484|C/T|missense_variant	REV__ACVR2B|p.S423L|1|0.14|ENSG00000114739|chr3:38482484-38482484|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	647.7290649414062	2	646.827692	1291.64083	-0.26311	-0.00017018	0.03375	2.183E-05	-0.22936	-0.00014835	646.8278797008177	56.098	0.50608	56.098	55.891	56.397	0					20	9	3	0	0	0	0.28721	1	20103	20103		47.732	11.226	1	4058500	+		12204	15306	8773	8844	11904	11904					0.006675594926491613
EQLEEVMRE	9	Unmodified	_EQLEEVMRE_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A;ENST00000544777.1_1_12:442481-443474:-|nuORF	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	A375_MHC_IP_R1	1	582.17431640625	2	581.774071	1161.53359	-0.20678	-0.0001203	0.79419	0.00046204	0.58741	0.00034174	582.2760877360918	50.235	0.40926	50.235	49.998	50.408	0					16	7	3	0	0	0	0.38603	1	17808	17808		25.399	0	1	3195400			12205	1565	8774	8845	11905	11905					-0.040717337132036846
EQLERIGL	8	Unmodified	_EQLERIGL_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000583408.5_1_17:30207568-30228646:-|nuORF;ENST00000579878.1_1_17:30219240-30228646:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-SECPEP	A375_MHC_IP_R2	2	479.6713562011719	2	479.271824	956.529095	-0.40484	-0.00019403	-0.030041	-1.4398E-05	-0.43488	-0.00020843	479.27181069850894	43.37	0.70733	44.142	43.876	44.583	0.7724					28	13	3	0	0	0	0.59711	1	16144	16144		53.576	0	1	12548000			12206	2825	8775	8846	11906	11906					0.04909169926179402
EQLGPRVT	8	Unmodified	_EQLGPRVT_					0	0	0		ENSG00000215045|ENST00000457091|GRID2IP	ENSG00000215045|ENST00000457091|GRID2IP	ENSG00000215045|ENST00000457091|GRID2IP	MSMS	A375_MHC_IP_R1	1	450.1588134765625	2	450.250892	898.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.207	1	35.207	34.707	35.707	0								0	0	0	0.16876	1	11689	11689		37.974	5.6685	1				12207	9638	8776	8847	11907	11907					0.03392614237657199
EQLHYFRYDKY	11	Unmodified	_EQLHYFRYDKY_					0	0	0		ENSG00000196664|ENST00000380659|TLR7	ENSG00000196664|ENST00000380659|TLR7	ENSG00000196664|ENST00000380659|TLR7	MSMS	A375_MHC_IP_R1	1	781.3728637695312	2	781.37534	1560.73613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.55	1	142.55	142.05	143.05	0								0	0	0	0.16353	1	54696	54696		0.35063	0.043601	1				12208	9073	8777	8848	11908	11908					-0.02181087316284902
EQLIDGILY	9	Unmodified	_EQLIDGILY_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-SECPEP	A375_MHC_IP_R2	2	532.686767578125	2	532.28714	1062.55973	-0.70803	-0.00037687	-0.26996	-0.0001437	-0.97799	-0.00052057	532.2869399177663	106.02	1.0701	106.78	106.27	107.34	0.75977					44	20	3	0	0	0	0.41434	1	40025	40025		32.786	0	1	7276900			12209	3317	8778	8849	11909	11909					0.03094903520582193
EQLILDMY	8	Unmodified	_EQLILDMY_					0	0	0			REV__ENST00000302640.12_1_3:4888999-4889098:+|nuORF	REV__ENST00000302640.12_1_3:4888999-4889098:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	512.689208984375	2	512.754618	1023.49468	-0.91666	-0.00047002	-1.1715	-0.00060071	-2.0882	-0.0010707	513.2542875465776	72.295	1.9781	73.03	72.214	74.192	0.73502					48	38	2	0	0	0	0.91495	1	27858	27858		7.9102	0	1	3494600	+		12210	23438	8779	8850	11910	11910					-0.01612414276939944
EQLKNIYI	8	Unmodified	_EQLKNIYI_					0	0	0		tr|U7STV7|U7STV7_FUSNUGlutamyl-tRNAreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemAPE=3SV=1	tr|U7STV7|U7STV7_FUSNUGlutamyl-tRNAreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemAPE=3SV=1	tr|U7STV7|U7STV7_FUSNUGlutamyl-tRNAreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemAPE=3SV=1	MSMS	A375_MHC_IP_R1	1	510.697509765625	2	510.78985	1019.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.128	1	55.128	54.628	55.628	0								0	0	0	0.16876	1	19706	19706		12.532	0	1				12211	29716	8780	8851	11911	11911					0.0561462710302294
EQLLNTAEI	9	Unmodified	_EQLLNTAEI_					0	0	0		ENSG00000135801|ENST00000258281|TAF5L;nc|ENSG00000135801|O75529-2|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	MULTI-SECPEP	A375_MHC_IP_R1	1	515.18994140625	2	515.774396	1029.53424	-0.38274	-0.00019741	1.1569	0.00059672	0.77421	0.00039932	516.2767300026688	78.442	0.40491	78.442	78.201	78.606	0					9	7	2	0	0	0	0.3607	1	28622	28622		42.095	0	1	2248100			12212	4714	8781	8852	11912	11912					0.02065428998139396
EQLLQDEGYK	10	Unmodified	_EQLLQDEGYK_					0	0	0		ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9	ENSG00000177200|ENST00000447540|CHD9	ENSG00000177200|ENST00000447540|CHD9	MULTI-MSMS	A375_MHC_IP_R1	1	613.2003784179688	2	611.801143	1221.58773	0.0044772	2.7391E-06	0.48963	0.00029956	0.49411	0.0003023	611.8016950449995	39.042	0.81416	39.042	38.577	39.391	0					39	15	4	0	0	0	0.69306	1	13236	13236		13.906	2.4113	1	32515000			12213	8069	8782	8853	11913	11913					-0.014198182900145184
EQLLRAFIL	9	Unmodified	_EQLLRAFIL_					0	0	0		ENSG00000116670|ENST00000376692|MAD2L2;ENST00000376664.10_1_1:11735929-11741152:-|nuORF	ENSG00000116670|ENST00000376692|MAD2L2	ENSG00000116670|ENST00000376692|MAD2L2	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2083129882812	2	551.834591	1101.65463	-0.88761	-0.00048982	0.65101	0.00035925	-0.2366	-0.00013056	552.3362847926004	67.448	0.30608	67.448	67.348	67.654	0					8	5	2	0	0	0	0.50702	1	24495	24495		19.257	0	1	1011400			12214	3414	8783	8854	11914	11914					0.10786881782428281
EQLLRGVW	8	Unmodified	_EQLLRGVW_					0	0	0		ENSG00000072954|ENST00000187762|TMEM38A	ENSG00000072954|ENST00000187762|TMEM38A	ENSG00000072954|ENST00000187762|TMEM38A	MULTI-SECPEP	A375_MHC_IP_R1	1	501.1820983886719	2	500.782359	999.550165	-0.42261	-0.00021163	0.11136	5.5765E-05	-0.31125	-0.00015587	500.7822379288311	46.469	0.30024	46.469	46.245	46.545	0					9	5	2	0	0	0	0.93661	1	16324	16324		21.747	16.015	1	2406400			12215	1553	8784	8855	11915	11915					0.050371800257153154
EQLNLLCCLF	10	2 Carbamidomethyl (C)	_EQLNLLC(Carbamidomethyl (C))C(Carbamidomethyl (C))LF_	EQLNLLC(1)C(1)LF		EQLNLLC(48)C(48)LF		0	2	0			REV__nc|ENSG00000171680|O94827-4|PLEKHG5	REV__nc|ENSG00000171680|O94827-4|PLEKHG5	MULTI-MSMS	A375_MHC_IP_R2	2	655.7169799804688	2	655.317591	1308.62063	-1.4339	-0.00093969	0.65892	0.0004318	-0.77502	-0.00050788	655.3180963964037	53.371	0.45959	54.122	53.842	54.301	0.75105					14	8	2	0	0	0	0.21466	1	20169	20169		47.749	9.9774	1	3125400	+		12216	21086	8785	8856	11916	11916	78;79				-0.021336507631531276
EQLNLLCCLF	10	2 Carbamidomethyl (C)	_EQLNLLC(Carbamidomethyl (C))C(Carbamidomethyl (C))LF_					0	2	0			REV__nc|ENSG00000171680|O94827-4|PLEKHG5	REV__nc|ENSG00000171680|O94827-4|PLEKHG5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	655.317591	1308.62063	-0.22533	-0.00014766	-0.28351	-0.00018579	-0.50884	-0.00033345	655.3169522044766	54.063	0.50567	54.063	53.758	54.263	0	-0.029525	-0.00062113	NaN	47.749	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2560700	+		12217	21086	8785	8856			78;79				-0.021336507631531276
EQLNSLKLVTA	11	Unmodified	_EQLNSLKLVTA_					0	0	0			REV__tr|U7SKI7|U7SKI7_FUSNUGluconate:H+symporter(GntP)familytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02044PE=4SV=1	REV__tr|U7SKI7|U7SKI7_FUSNUGluconate:H+symporter(GntP)familytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02044PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	608.7501220703125	2	608.350803	1214.68705	-0.24382	-0.00014833	0.0017745	1.0795E-06	-0.24204	-0.00014725	608.3506669900297	141.91	1.5312	141.94	140.9	142.43	0.030731					64	29	3	0	0	0	0.99791	1	55332	55332		4.897	4.897	1	3565700	+		12218	28253	8786	8857	11917	11917					0.088296243947525
EQLQEENFRL	10	Unmodified	_EQLQEENFRL_					0	0	0		ENST00000465876.5_1_1:60281005-60331594:+|nuORF;nc|ENSG00000134709|Q9UJC3-2|HOOK1;ENSG00000134709|ENST00000371208|HOOK1;nc|ENSG00000095066|Q96ED9-2|HOOK2;ENSG00000095066|ENST00000397668|HOOK2	ENST00000465876.5_1_1:60281005-60331594:+|nuORF	ENST00000465876.5_1_1:60281005-60331594:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	653.7247924804688	2	653.325316	1304.63608	-0.94215	-0.00061553	0.21734	0.000142	-0.7248	-0.00047353	653.3254092475486	51.188	0.40528	51.94	51.713	52.118	0.75225					12	7	2	0	0	0	0.41205	1	19288	19288		33.445	7.1768	1	2306900			12219	4598	8787	8858	11918	11918					-0.0040532465011438035
EQLQEENFRL	10	Unmodified	_EQLQEENFRL_					0	0	0		ENST00000465876.5_1_1:60281005-60331594:+|nuORF;nc|ENSG00000134709|Q9UJC3-2|HOOK1;ENSG00000134709|ENST00000371208|HOOK1;nc|ENSG00000095066|Q96ED9-2|HOOK2;ENSG00000095066|ENST00000397668|HOOK2	ENST00000465876.5_1_1:60281005-60331594:+|nuORF	ENST00000465876.5_1_1:60281005-60331594:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	653.325316	1304.63608	-0.24064	-0.00015721	0.51733	0.00033799	0.27669	0.00018077	653.325091883336	51.84	0.46003	51.84	51.625	52.085	0	-0.04971	0.00033884	NaN	33.445	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2125700			12220	4598	8787	8858							-0.0040532465011438035
EQLRYLWH	8	Unmodified	_EQLRYLWH_					0	0	0			REV__ENSG00000183709|ENST00000331982|IFNL2	REV__ENSG00000183709|ENST00000331982|IFNL2	MSMS	A375_MHC_IP_R1	1	572.71142578125	2	572.79854	1143.58253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.581	1	44.581	44.081	45.081	0								0	0	0	0.16876	1	15562	15562		18.135	2.2878	1		+		12221	21770	8788	8859	11919	11919					0.016479674286983936
EQLSKQVHY	9	Unmodified	_EQLSKQVHY_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	A375_MHC_IP_R1	1	566.1953735351562	2	566.293288	1130.57202	-0.3604	-0.00020409	2.1775	0.0012331	1.8171	0.001029	566.294008744675	59.981	1.068	59.981	59.346	60.414	0					64	20	5	0	0	0	0.21241	1	21422	21422		47.749	11.622	1	29965000			12222	1157	8789	8860	11920	11920					0.011959399836086959
EQLSTESCE	9	Unmodified	_EQLSTESCE_					0	0	0			REV__nc|ENSG00000170185|Q8NB14-2|USP38	REV__nc|ENSG00000170185|Q8NB14-2|USP38	MULTI-MSMS	A375_MHC_IP_R2	2	513.205322265625	2	513.208229	1024.40191	-0.69925	-0.00035886	2.97	0.0015243	2.2708	0.0011654	513.2102754571259	73.483	0.35529	74.218	73.938	74.294	0.73541					10	6	2	0	0	0	0.65721	1	27915	27915		10.824	0	1	669330	+		12223	20972	8790	8861	11921	11921					-0.10931963800953781
EQLSTESCE	9	Unmodified	_EQLSTESCE_					0	0	0			REV__nc|ENSG00000170185|Q8NB14-2|USP38	REV__nc|ENSG00000170185|Q8NB14-2|USP38	MULTI-SECPEP	A375_MHC_IP_R2	2	512.689208984375	2	513.208229	1024.40191	-0.69925	-0.00035886	2.97	0.0015243	2.2708	0.0011654	513.2102754571259	73.483	0.35529	74.218	73.938	74.294	0.73541					10	6	2	0	0	0	0.73363	1	27858	27858		3.5965	0	1	669330	+		12224	20972	8790	8861	11922	11922					-0.10931963800953781
EQLSTESCE	9	Unmodified	_EQLSTESCE_					0	0	0			REV__nc|ENSG00000170185|Q8NB14-2|USP38	REV__nc|ENSG00000170185|Q8NB14-2|USP38	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	513.208229	1024.40191	-0.49349	-0.00025326	1.7746	0.00091076	1.2811	0.00065749	513.2095038606753	74.171	0.45604	74.171	73.893	74.349	0	-0.023436	-0.00048905	NaN	10.824	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	649030	+		12225	20972	8790	8861							-0.10931963800953781
EQLTVFDSY	9	Unmodified	_EQLTVFDSY_					0	0	0			REV__nc|ENSG00000167208|Q7Z614-2|SNX20	REV__nc|ENSG00000167208|Q7Z614-2|SNX20	MULTI-MSMS	A375_MHC_IP_R1	1	551.7059936523438	2	551.258579	1100.50261	-0.56745	-0.00031281	0.27938	0.00015401	-0.28807	-0.0001588	551.258919298845	75.784	1.6188	75.784	75.362	76.981	0					55	19	4	0	0	0	0.65721	1	27798	27798		10.824	1.4408	1	29731000	+		12226	27341	8791	8862	11923	11923					-0.043625637557852315
EQLTVFDSY	9	Unmodified	_EQLTVFDSY_					0	0	0			REV__nc|ENSG00000167208|Q7Z614-2|SNX20	REV__nc|ENSG00000167208|Q7Z614-2|SNX20	MULTI-MSMS	A375_MHC_IP_R2	2	551.7057495117188	2	551.258579	1100.50261	-0.82153	-0.00045288	0.010091	5.5629E-06	-0.81144	-0.00044731	551.2587472398069	75.157	1.4728	75.894	75.467	76.94	0.73752					54	19	4	0	0	0	0.32899	1	28395	28395		28.487	3.0875	1	32719000	+		12227	27341	8791	8862	11924	11924					-0.043625637557852315
EQLVTALCDI	10	Unmodified	_EQLVTALCDI_					0	0	0		ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	552.0280151367188	2	552.783907	1103.55326	-0.78414	-0.00043346	-1.0026	-0.00055425	-1.7868	-0.0009877	552.7813781290514	75.715	0.46031	76.455	76.129	76.589	0.74052					9	8	2	0	0	0	0.83355	1	28724	28724		17.113	1.8644	1	507420			12228	1168	8792	8863	11925	11925					0.005626422975183232
EQLYCWAPW	9	Unmodified	_EQLYCWAPW_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;nc|ENSG00000179532|Q96M86-4|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MSMS	A375_MHC_IP_R1	1	598.2032470703125	2	598.265684	1194.51682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.102	1	52.102	51.602	52.602	0								0	0	0	0.15486	1	18516	18516		10.074	0.6908	1				12229	8235	8793	8864	11926	11926					-0.07266189808524359
EQLYISKV	8	Unmodified	_EQLYISKV_					0	0	0			REV__ENST00000487720.1_1_7:26887667-26904048:-|nuORF	REV__ENST00000487720.1_1_7:26887667-26904048:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	490.1659851074219	2	490.276575	978.538597	-0.65141	-0.00031937	0.23227	0.00011387	-0.41915	-0.0002055	490.2765431574966	44.675	0.66362	45.444	45.086	45.75	0.7691					19	12	2	0	0	0	0.73563	1	16632	16632		44.407	2.3125	1	1575000	+		12230	16110	8794	8865	11927	11927					0.04846938211710494
EQMRESRW	8	Unmodified	_EQMRESRW_					0	0	0		nc|ENSG00000140474|Q6PHR2-3|ULK3	nc|ENSG00000140474|Q6PHR2-3|ULK3	nc|ENSG00000140474|Q6PHR2-3|ULK3	MSMS	A375_MHC_IP_R2	2	561.2213134765625	2	561.261465	1120.50838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.352	1	59.101	58.601	59.601	0.74894								0	0	0	0.16876	1	22077	22077		18.135	5.6034	1				12231	14641	8795	8866	11928	11928					-0.047057437251169176
EQMSWTVRL	9	Unmodified	_EQMSWTVRL_					0	0	0			REV__nc|ENSG00000077235|Q12789-3|GTF3C1	REV__nc|ENSG00000077235|Q12789-3|GTF3C1	MSMS	A375_MHC_IP_R1	1	575.2789916992188	2	575.289691	1148.56483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.281	1	92.281	91.781	92.781	0								0	0	0	0.15486	1	33912	33912		10.824	1.4408	1		+		12232	27118	8796	8867	11929	11929					-0.0035111588845211372
EQNDQYTPS	9	Unmodified	_EQNDQYTPS_					0	0	0		ENSG00000151612|ENST00000508784|ZNF827;nc|ENSG00000151612|Q17R98-2|ZNF827	ENSG00000151612|ENST00000508784|ZNF827	ENSG00000151612|ENST00000508784|ZNF827	MULTI-MSMS	A375_MHC_IP_R1	1	541.6824340820312	2	541.225268	1080.43598	-0.62372	-0.00033758	-0.76645	-0.00041482	-1.3902	-0.0007524	541.224794340417	73.359	0.70922	73.359	73.031	73.74	0					23	13	2	0	0	0	0.70307	1	26606	26606		6.7232	0.36906	1	3529500			12233	5915	8797	8868	11930	11930					-0.10101799317703808
EQNESTMEL	9	Oxidation (M)	_EQNESTM(Oxidation (M))EL_		EQNESTM(1)EL		EQNESTM(44)EL	0	0	1			REV__ENSG00000092470|ENST00000263795|WDR76	REV__ENSG00000092470|ENST00000263795|WDR76	MULTI-MSMS	A375_MHC_IP_R1	1	549.1285400390625	2	548.726786	1095.43902	-0.48404	-0.00026561	1.8927	0.0010386	1.4086	0.00077296	548.7280177793228	102.06	0.70764	102.06	101.7	102.4	0					23	12	2	0	0	0	0.13797	1	37514	37514		43.858	17.59	1	3238600	+		12234	16973	8798	8869	11931	11931		474			-0.10488292255217857
EQNFDAYVS	9	Unmodified	_EQNFDAYVS_					0	0	0		ENSG00000196132|ENST00000328439|MYT1;nc|ENSG00000196132|Q01538-2|MYT1	ENSG00000196132|ENST00000328439|MYT1	ENSG00000196132|ENST00000328439|MYT1	MSMS	A375_MHC_IP_R2	2	536.6115112304688	2	536.732729	1071.4509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.317	1	62.062	61.562	62.562	0.74503								0	0	0	0.15069	1	23238	23238		20.454	3.5113	1				12235	9002	8799	8870	11932	11932					-0.08196307449725282
EQNIEWLY	8	Unmodified	_EQNIEWLY_					0	0	0			REV__ENSG00000204450|ENST00000533122|TRIM64	REV__ENSG00000204450|ENST00000533122|TRIM64	MULTI-MSMS	A375_MHC_IP_R1	1	548.160888671875	2	547.761289	1093.50803	-0.42987	-0.00023547	-0.36401	-0.00019939	-0.79388	-0.00043486	547.7611329782068	105.41	0.86259	105.41	105.1	105.96	0					36	16	3	0	0	0	0.68328	1	38660	38660		39.957	1.8061	1	8631000	+		12236	22144	8800	8871	11933	11933					-0.034988401733244245
EQNIEWLY	8	Unmodified	_EQNIEWLY_					0	0	0			REV__ENSG00000204450|ENST00000533122|TRIM64	REV__ENSG00000204450|ENST00000533122|TRIM64	MULTI-MSMS	A375_MHC_IP_R2	2	548.1602172851562	2	547.761289	1093.50803	-0.72246	-0.00039573	-0.13422	-7.352E-05	-0.85668	-0.00046925	547.7612088999969	104.73	0.91588	105.49	105.11	106.02	0.76308					40	17	3	0	0	0	0.51581	1	39566	39566		48.346	3.9388	1	9293200	+		12237	22144	8800	8871	11934	11934					-0.034988401733244245
EQNLDWQE	8	Unmodified	_EQNLDWQE_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MSMS	A375_MHC_IP_R2	2	531.1873168945312	2	531.230353	1060.44615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.805	1	64.545	64.045	65.045	0.74022								0	0	0	0.16876	1	24195	24195		21.747	2.4897	1				12238	7640	8801	8872	11935	11935					-0.0816519159247946
EQNPHEKNLS	10	Unmodified	_EQNPHEKNLS_					0	0	0			REV__nc|ENSG00000167216|Q8IYT4-2|KATNAL2	REV__nc|ENSG00000167216|Q8IYT4-2|KATNAL2	MULTI-SECPEP	A375_MHC_IP_R2	2	399.5947265625	3	399.194915	1194.56291	-0.2765	-0.00011038	-0.085102	-3.3972E-05	-0.3616	-0.00014435	399.1948620471314	40.858	0.50922	41.632	41.386	41.895	0.77451					14	9	2	0	0	0	0.90513	1	15193	15193		2.6312	0	1	2431100	+		12239	20743	8802	8873	11936	11936					-0.026584533727145754
EQNPNSDTQV	10	Unmodified	_EQNPNSDTQV_					0	0	0			REV__ENSG00000175105|ENST00000636215|ZNF654	REV__ENSG00000175105|ENST00000636215|ZNF654	MSMS	A375_MHC_IP_R2	2	566.1951904296875	2	566.249274	1130.484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.173	1	88.904	88.404	89.404	0.7318								0	0	0	0.14179	1	33552	33552		29.082	10.935	1		+		12240	21325	8803	8874	11937	11937					-0.07602725397669019
EQNRIVEMFH	10	Unmodified	_EQNRIVEMFH_					0	0	0			REV__nc|ENSG00000109790|Q96PQ7-3|KLHL5	REV__nc|ENSG00000109790|Q96PQ7-3|KLHL5	MSMS	A375_MHC_IP_R1	1	435.2823791503906	3	434.880162	1301.61866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.164	1	22.164	21.664	22.664	0								0	0	0	0.15577	1	5920	5920		2.086	0.34373	1		+		12241	27169	8804	8875	11938	11938					-0.020089434567353237
EQNRYHSIF	9	Unmodified	_EQNRYHSIF_					0	0	0		nc|ENSG00000244694|Q6ZW05-4|PTCHD4;PTCHD4|p.E600Kfs*30|1|0.26|ENSG00000244694|chr6:47879046-47879046|C/-|frameshift_variant;ENSG00000244694|ENST00000339488|PTCHD4;nc|ENSG00000244694|Q6ZW05|PTCHD4	nc|ENSG00000244694|Q6ZW05-4|PTCHD4	nc|ENSG00000244694|Q6ZW05-4|PTCHD4	MULTI-SECPEP	A375_MHC_IP_R2	2	597.119873046875	2	597.288537	1192.56252	-0.78113	-0.00046656	-1.3377	-0.00079899	-2.1188	-0.0012656	597.2877769346752	54.539	0.65817	55.29	54.814	55.473	0.75075					20	12	3	0	0	0	0.60917	1	20592	20592		25.399	0	1	2151800			12242	9825	8805	8876	11939	11939					-0.02605828301921065
EQPFLFVDLFY	11	Unmodified	_EQPFLFVDLFY_					0	0	0			REV__nc|ENSG00000174844|Q6ZR08|DNAH12	REV__nc|ENSG00000174844|Q6ZR08|DNAH12	MSMS	A375_MHC_IP_R1	1	709.5119018554688	2	709.355554	1416.69655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.162	1	62.162	61.662	62.662	0								0	0	0	0.16265	1	22440	22440		4.897	0	1		+		12243	27370	8806	8877	11940	11940					0.004873926802929418
EQPLAEQAE	9	Unmodified	_EQPLAEQAE_					0	0	0			REV__nc|ENSG00000197226|Q66K14|TBC1D9B	REV__nc|ENSG00000197226|Q66K14|TBC1D9B	MSMS	A375_MHC_IP_R1	1	507.70281982421875	2	507.740554	1013.46655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.446	1	47.446	46.946	47.946	0								0	0	0	0.15411	1	16691	16691		14.838	0.25658	1		+		12244	27440	8807	8878	11941	11941					-0.0396402093266488
EQPLEKMIY	9	Unmodified	_EQPLEKMIY_					0	0	0			REV__ENSG00000115361|ENST00000233710|ACADL	REV__ENSG00000115361|ENST00000233710|ACADL	MULTI-SECPEP	A375_MHC_IP_R1	1	575.2789916992188	2	575.794275	1149.574	0.015596	8.9803E-06	-3.187	-0.0018351	-3.1714	-0.0018261	575.7900502952758	92.362	0.20216	92.362	92.261	92.463	0					5	3	2	0	0	0	0.65246	1	33912	33912		10.824	2.9138	1	695260	+		12245	17878	8808	8879	11942	11942					0.00519232677220316
EQPRDFLKL	9	Unmodified	_EQPRDFLKL_					0	0	0			REV__nc|ENSG00000137145|Q5VZ89|DENND4C	REV__nc|ENSG00000137145|Q5VZ89|DENND4C	MULTI-MSMS	A375_MHC_IP_R1	1	382.9485778808594	3	382.548629	1144.62406	0.82329	0.00031495	-0.52713	-0.00020165	0.29617	0.0001133	382.5483953870925	49.2	1.2156	49.2	48.426	49.642	0					58	23	4	0	0	0	0.06083	1	17326	17326		47.732	10.657	1	28898000	+		12246	18989	8809	8880	11943	11943					0.05753103397364612
EQPRITGCDP	10	Unmodified	_EQPRITGCDP_					0	0	0			REV__HYDIN|p.G653E|2|0.36|ENSG00000157423|chr16:71069283-71069283|C/T|missense_variant	REV__HYDIN|p.G653E|2|0.36|ENSG00000157423|chr16:71069283-71069283|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	558.1799926757812	2	558.26113	1114.50771	-0.76519	-0.00042718	1.5406	0.00086004	0.77538	0.00043286	558.2621912444387	74.501	1.168	75.238	74.958	76.126	0.73752					42	22	4	0	0	0	0.70528	1	28287	28287		7.1017	1.8048	1	6744500	+		12247	26772	8810	8881	11944	11944					-0.04496583164859658
EQPVYTTLSRP	11	Unmodified	_EQPVYTTLSRP_					0	0	0		nc|ENSG00000100146|P56693|SOX10;chr22:37984441-37987345|453|15.29|0.34|5.48|-|ENST00000360880|SOX10,SOX10;nc|ENSG00000100146|P56693-2|SOX10	nc|ENSG00000100146|P56693|SOX10	nc|ENSG00000100146|P56693|SOX10	MULTI-SECPEP	A375_MHC_IP_R1	1	646.2379150390625	2	645.838059	1289.66157	0.075808	4.896E-05	-0.58294	-0.00037648	-0.50713	-0.00032752	645.8376390256493	48.893	0.40419	48.893	48.729	49.134	0					12	7	2	0	0	0	0.78053	1	17304	17304		30.431	27.933	1	1924500			12248	471	8811	8882	11945	11945					0.028321498723244076
EQPVYTTLSRP	11	Unmodified	_EQPVYTTLSRP_					0	0	0		nc|ENSG00000100146|P56693|SOX10;chr22:37984441-37987345|453|15.29|0.34|5.48|-|ENST00000360880|SOX10,SOX10;nc|ENSG00000100146|P56693-2|SOX10	nc|ENSG00000100146|P56693|SOX10	nc|ENSG00000100146|P56693|SOX10	MSMS	A375_MHC_IP_R2	2	646.2372436523438	2	645.838059	1289.66157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.336	1	49.093	48.593	49.593	0.75737								0	0	0	0.11982	1	18150	18150		31.636	7.846	1				12249	471	8811	8882	11946	11946					0.028321498723244076
EQQDEGLEEE	10	Unmodified	_EQQDEGLEEE_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	A375_MHC_IP_R2	2	603.184814453125	2	603.243854	1204.47316	-0.38251	-0.00023075	0.88482	0.00053376	0.50231	0.00030301	603.244556035678	69.728	0.51013	70.462	70.183	70.693	0.73421					15	9	2	0	0	0	0.70012	1	26408	26408		12.241	6.5088	1	2055100	+		12250	20119	8812	8883	11947	11947					-0.12090172562602675
EQQEEEVEGE	10	Unmodified	_EQQEEEVEGE_					0	0	0			REV__nc|ENSG00000164944|Q69YN4-4|VIRMA	REV__nc|ENSG00000164944|Q69YN4-4|VIRMA	MULTI-MSMS	A375_MHC_IP_R1	1	603.185302734375	2	603.243854	1204.47316	-0.20694	-0.00012483	0.60139	0.00036278	0.39445	0.00023795	603.2440684325692	70.315	0.3591	70.315	70.135	70.494	0					11	6	2	0	0	0	0.70651	1	25510	25510		9.3831	0	1	1745300	+		12251	20532	8813	8884	11948	11948					-0.12090172562602675
EQQELEALSQD	11	Unmodified	_EQQELEALSQD_					0	0	0		ENSG00000164867|ENST00000297494|NOS3	ENSG00000164867|ENST00000297494|NOS3	ENSG00000164867|ENST00000297494|NOS3	MULTI-SECPEP	A375_MHC_IP_R1	1	644.9984130859375	2	645.296421	1288.57829	-0.48789	-0.00031483	-4.4205	-0.0028525	-4.9083	-0.0031673	645.293878946271	40.177	0.25533	40.177	39.999	40.254	0					7	4	2	0	0	0	0.90673	1	13805	13805		18.373	2.224	1	1247400			12252	6888	8814	8885	11949	11949					-0.05445631366183079
EQQLQALTERQ	11	Unmodified	_EQQLQALTERQ_					0	0	0			REV__ENST00000395134.3_1_6:33258469-33258619:+|nuORF	REV__ENST00000395134.3_1_6:33258469-33258619:+|nuORF	MSMS	A375_MHC_IP_R2	2	672.4473266601562	2	672.349323	1342.68409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.153	1	99.912	99.412	100.41	0.75977								0	0	0	0.16265	1	37613	37613		4.897	1.3005	1		+		12253	22498	8815	8886	11950	11950					0.02645749269913722
EQQLQALTERQ	11	Unmodified	_EQQLQALTERQ_					0	0	0			REV__ENST00000395134.3_1_6:33258469-33258619:+|nuORF	REV__ENST00000395134.3_1_6:33258469-33258619:+|nuORF	MSMS	A375_MHC_IP_R2	2	672.5066528320312	2	672.349323	1342.68409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.21	1	99.969	99.469	100.47	0.75977								0	0	0	0.16273	1	37635	37635		4.5289	1.2476	1		+		12254	22498	8815	8886	11951	11951					0.02645749269913722
EQQNTIESKM	10	Unmodified	_EQQNTIESKM_					0	0	0		nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000562200.5_1_16:70543798-70557434:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4	nc|ENSG00000103051|Q9H9E3|COG4	nc|ENSG00000103051|Q9H9E3|COG4	MULTI-SECPEP	A375_MHC_IP_R1	1	603.6441040039062	2	604.284802	1206.55505	-0.095127	-5.7484E-05	1.0483	0.0006335	0.95321	0.00057601	604.2855652669513	70.126	0.5593	70.126	69.832	70.392	0					16	10	2	0	0	0	0.74754	1	25554	25554		17.113	0	1	3528300			12255	2415	8816	8887	11952	11952					-0.03996348684495388
EQQNTIESKM	10	Unmodified	_EQQNTIESKM_					0	0	0		nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000562200.5_1_16:70543798-70557434:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4	nc|ENSG00000103051|Q9H9E3|COG4	nc|ENSG00000103051|Q9H9E3|COG4	MULTI-MATCH	A375_MHC_IP_R2	2		2	604.284802	1206.55505	-0.35707	-0.00021577	0.51024	0.00030833	0.15318	9.2563E-05	604.285098927319	69.525	0.65934	70.259	69.829	70.488	0.73421	0.066333	-0.00032161	NaN	12.241	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3051100			12256	2415	8816	8887							-0.03996348684495388
EQQPNTYVGFK	11	Unmodified	_EQQPNTYVGFK_					0	0	0		ENSG00000176256|ENST00000681531|HMGB4	ENSG00000176256|ENST00000681531|HMGB4	ENSG00000176256|ENST00000681531|HMGB4	MULTI-MSMS	A375_MHC_IP_R1	1	437.95025634765625	3	437.550698	1309.63027	-0.46395	-0.000203	-0.23534	-0.00010297	-0.69929	-0.00030597	437.550592559195	26.601	0.50445	26.601	26.423	26.928	0					18	9	3	0	0	0	0.73239	1	8013	8013		6.6235	1.7264	1	3105100			12257	8013	8817	8888	11953	11953					-0.012164231617816768
EQQQRELNYRF	11	Unmodified	_EQQQRELNYRF_					0	0	0			REV__ENST00000490702.1_1_X:53455445-53456137:+|nuORF	REV__ENST00000490702.1_1_X:53455445-53456137:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	504.1513366699219	3	504.251423	1509.73244	-0.43266	-0.00021817	0.20184	0.00010178	-0.23082	-0.00011639	504.25143442009	34.416	0.50606	34.416	34.253	34.759	0					11	9	2	0	0	0	0.99883	1	11381	11381		1.2148	0.20126	1	1156200	+		12258	20074	8818	8889	11954	11954					-0.0020375709013933374
EQQRMDEY	8	Unmodified	_EQQRMDEY_					0	0	0			REV__ENSG00000197651|ENST00000358859|CCER1	REV__ENSG00000197651|ENST00000358859|CCER1	MULTI-MSMS	A375_MHC_IP_R1	1	549.7371215820312	2	549.729663	1097.44477	-0.48655	-0.00026747	-2.8328	-0.0015573	-3.3194	-0.0018248	550.2287949314508	102.07	0.20391	102.07	101.95	102.15	0					6	3	2	0	0	0	0.77603	1	37498	37498		9.3474	0	1	680000	+		12259	22306	8819	8890	11955	11955					-0.10005148952882337
EQQSEPHRY	9	Unmodified	_EQQSEPHRY_					0	0	0			REV__ENSG00000161328|ENST00000270115|LRRC56	REV__ENSG00000161328|ENST00000270115|LRRC56	MULTI-MSMS	A375_MHC_IP_R1	1	587.6826171875	2	587.267801	1172.52105	-0.22508	-0.00013218	2.1809	0.0012808	1.9558	0.0011486	587.2693579876978	70.723	0.35616	70.723	70.494	70.85	0					11	6	2	0	0	0	0.32899	1	25646	25646		28.487	2.2187	1	1224400	+		12260	20206	8820	8891	11956	11956					-0.05831009061216719
EQRDAHRF	8	Unmodified	_EQRDAHRF_					0	0	0		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-MSMS	A375_MHC_IP_R2	2	529.7288818359375	2	529.759946	1057.50534	-0.65578	-0.00034741	0.51599	0.00027335	-0.13979	-7.4057E-05	529.7599821941492	107.19	0.50725	107.95	107.74	108.25	0.75436					12	9	2	0	0	0	0.69583	1	40536	40536		36.044	0	1	789300			12261	1784	8821	8892	11957	11957					-0.02111250787629615
EQRDAHRF	8	Unmodified	_EQRDAHRF_					0	0	0		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-MATCH	A375_MHC_IP_R1	1		2	529.759946	1057.50534	-0.31252	-0.00016556	0.41021	0.00021731	0.097693	5.1754E-05	529.7598965169038	107.94	0.40593	107.94	107.8	108.21	0	-0.0039009	-7.1472E-05	NaN	36.044	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	935070			12262	1784	8821	8892							-0.02111250787629615
EQRFPIPGLL	10	Unmodified	_EQRFPIPGLL_					0	0	0		ENST00000604516.1_1_6:79944081-79944252:+|nuORF	ENST00000604516.1_1_6:79944081-79944252:+|nuORF	ENST00000604516.1_1_6:79944081-79944252:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	390.6156005859375	3	390.560758	1168.66044	0.22149	8.6505E-05	-1.0909	-0.00042607	-0.86943	-0.00033956	390.5598764401452	20.431	1.0689	20.431	19.827	20.895	0					28	20	2	0	0	0	0.7154	1	5046	5046		5.4027	0	1	3837100			12263	13902	8822	8893	11958	11958					0.08285980294090223
EQRLISEIEY	10	Unmodified	_EQRLISEIEY_					0	0	0		nc|ENSG00000129116|Q8WX93|PALLD;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93-2|PALLD;ENSG00000129116|ENST00000505667|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-8|PALLD	nc|ENSG00000129116|Q8WX93|PALLD	nc|ENSG00000129116|Q8WX93|PALLD	MULTI-SECPEP	A375_MHC_IP_R2	2	640.9896850585938	2	640.330067	1278.64558	-0.79437	-0.00050866	-2.5289	-0.0016193	-3.3233	-0.002128	640.3283134271189	64.988	0.45652	65.726	65.562	66.018	0.73812					13	8	2	0	0	0	0.72086	1	24647	24647		8.7454	3.0136	1	1288300			12264	14593	8823	8894	11959	11959					0.01740443635412703
EQRLKKKW	8	Unmodified	_EQRLKKKW_					0	0	0			REV__ENST00000545213.5_1_14:24789074-24794639:-|nuORF	REV__ENST00000545213.5_1_14:24789074-24794639:-|nuORF	MSMS	A375_MHC_IP_R1	1	558.2504272460938	2	558.337833	1114.66111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.223	1	73.223	72.723	73.723	0								0	0	0	0.16876	1	26654	26654		9.3474	0	1		+		12265	18492	8824	8895	11960	11960					0.1083681973379953
EQRRERKRKI	10	Unmodified	_EQRRERKRKI_					0	0	0		FAM50B|p.I243Afs*28|1|0.53|ENSG00000145945|chr6:3850537-3850544|CATCCTGC/-|frameshift_variant;ENSG00000145945|ENST00000648326|FAM50B	FAM50B|p.I243Afs*28|1|0.53|ENSG00000145945|chr6:3850537-3850544|CATCCTGC/-|frameshift_variant	FAM50B|p.I243Afs*28|1|0.53|ENSG00000145945|chr6:3850537-3850544|CATCCTGC/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	467.00750732421875	3	466.951531	1397.83276	-0.56916	-0.00026577	-0.12927	-6.0364E-05	-0.69843	-0.00032613	466.95159905667606	136.64	0.56503	136.64	136.25	136.82	0					13	10	2	0	0	0	0.72607	1	52633	52633		0.62683	0	1	695110			12266	5594	8825	8896	11961	11961					0.14975944754178272
EQRRERKRKI	10	Unmodified	_EQRRERKRKI_					0	0	0		FAM50B|p.I243Afs*28|1|0.53|ENSG00000145945|chr6:3850537-3850544|CATCCTGC/-|frameshift_variant;ENSG00000145945|ENST00000648326|FAM50B	FAM50B|p.I243Afs*28|1|0.53|ENSG00000145945|chr6:3850537-3850544|CATCCTGC/-|frameshift_variant	FAM50B|p.I243Afs*28|1|0.53|ENSG00000145945|chr6:3850537-3850544|CATCCTGC/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	466.951531	1397.83276	-0.56916	-0.00026577	-0.12927	-6.0364E-05	-0.69843	-0.00032613	466.95159905667606	136.64	0.56503	136.64	136.25	136.82	0	0.016772	-0.00036788	NaN	0.62683	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	695110			12267	5594	8825	8896							0.14975944754178272
EQRRERKRKI	10	Unmodified	_EQRRERKRKI_					0	0	0		FAM50B|p.I243Afs*28|1|0.53|ENSG00000145945|chr6:3850537-3850544|CATCCTGC/-|frameshift_variant;ENSG00000145945|ENST00000648326|FAM50B	FAM50B|p.I243Afs*28|1|0.53|ENSG00000145945|chr6:3850537-3850544|CATCCTGC/-|frameshift_variant	FAM50B|p.I243Afs*28|1|0.53|ENSG00000145945|chr6:3850537-3850544|CATCCTGC/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	466.951531	1397.83276	-0.47526	-0.00022192	0.51883	0.00024227	0.043576	2.0348E-05	466.95169499504266	136.49	0.30673	136.61	136.4	136.71	0.11134	-0.016772	0.00054002	NaN	0.62683	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	630220			12268	5594	8825	8896							0.14975944754178272
EQRRMRRGPLK	11	Unmodified	_EQRRMRRGPLK_					0	0	0			REV__ENST00000610086.1_1_7:86954707-86970752:-|nuORF	REV__ENST00000610086.1_1_7:86954707-86970752:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	358.1101989746094	4	357.459756	1425.80992	-0.21104	-7.5439E-05	-0.52759	-0.00018859	-0.73863	-0.00026403	357.45955473085655	36.513	0.66092	36.513	36.184	36.845	0					42	12	5	0	0	0	0.98994	1	12197	12197		10.527	10.527	1	26510000	+		12269	26575	8826	8897	11962	11962					0.11404602365041683
EQRRMRRGPLK	11	Unmodified	_EQRRMRRGPLK_					0	0	0			REV__ENST00000610086.1_1_7:86954707-86970752:-|nuORF	REV__ENST00000610086.1_1_7:86954707-86970752:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	476.67645263671875	3	476.277249	1425.80992	-0.76262	-0.00036322	-0.39418	-0.00018774	-1.1568	-0.00055096	476.27697318372213	35.483	0.35332	36.247	36.03	36.384	0.76338					20	6	4	0	0	0	0.99661	1	12857	12857		5.1984	5.1984	1	5520300	+		12270	26575	8826	8897	11963	11963					0.11404602365041683
EQRRMRRGPLK	11	Unmodified	_EQRRMRRGPLK_					0	0	0			REV__ENST00000610086.1_1_7:86954707-86970752:-|nuORF	REV__ENST00000610086.1_1_7:86954707-86970752:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	476.67706298828125	3	476.277249	1425.80992	-0.45542	-0.00021691	0.1507	7.1775E-05	-0.30472	-0.00014513	476.27722422390957	133.39	0.30281	133.56	133.4	133.7	0.16487					9	5	2	0	0	0	1.0015	1	52518	52518		0.073264	0	1	3068500	+		12271	26575	8826	8897	11964	11964					0.11404602365041683
EQRRRKEPEER	11	Unmodified	_EQRRRKEPEER_					0	0	0			REV__ENSG00000159450|ENST00000614923|TCHH	REV__ENSG00000159450|ENST00000614923|TCHH	MULTI-SECPEP	A375_MHC_IP_R2	2	504.16314697265625	3	504.937838	1511.79169	-0.9476	-0.00047848	1.0793	0.00054498	0.13171	6.6504E-05	504.93884142482864	37.617	0.77075	38.391	38.123	38.894	0.77343					29	14	3	0	0	0	0.99945	1	13777	13777		2.2527	1.0379	1	13115000	+		12272	20121	8827	8898	11965	11965					0.056261389240489734
EQRSVQLLPK	10	Unmodified	_EQRSVQLLPK_					0	0	0			REV__ENSG00000100345|ENST00000216181|MYH9	REV__ENSG00000100345|ENST00000216181|MYH9	MSMS	A375_MHC_IP_R1	1	599.6800537109375	2	599.351137	1196.68772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.073	1	69.073	68.573	69.573	0								0	0	0	0.15353	1	25059	25059		9.3831	0	1		+		12273	17077	8828	8899	11966	11966					0.09724463834481867
EQRVFRTQI	9	Unmodified	_EQRVFRTQI_					0	0	0		ENST00000489112.5_1_3:98475311-98491765:+|nuORF	ENST00000489112.5_1_3:98475311-98491765:+|nuORF	ENST00000489112.5_1_3:98475311-98491765:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	392.9400329589844	3	392.887645	1175.64111	0.02933	1.1523E-05	-1.1181	-0.00043928	-1.0887	-0.00042775	392.88700957032614	27.44	0.20234	27.44	27.331	27.533	0					5	3	2	0	0	0	0.78353	1	8339	8339		6.1918	0.78914	1	905810			12274	12629	8829	8900	11967	11967					0.06031024003186758
EQSAAEYVTF	10	Unmodified	_EQSAAEYVTF_					0	0	0			REV__nc|ENSG00000102452|Q8IZF0-2|NALCN	REV__nc|ENSG00000102452|Q8IZF0-2|NALCN	MULTI-SECPEP	A375_MHC_IP_R1	1	572.6790161132812	2	572.761486	1143.50842	-0.32845	-0.00018812	2.222	0.0012727	1.8935	0.0010845	572.7632415378732	87.291	0.81334	87.291	86.831	87.644	0					24	15	3	0	0	0	0.83355	1	32003	32003		17.113	3.2068	1	2672900	+		12275	25103	8830	8901	11968	11968					-0.057594652441366634
EQSFNYRY	8	Unmodified	_EQSFNYRY_					0	0	0			REV__PLA2G2D|p.G93E|1|0.31|ENSG00000117215|chr1:20115521-20115521|C/T|missense_variant	REV__PLA2G2D|p.G93E|1|0.31|ENSG00000117215|chr1:20115521-20115521|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	553.6613159179688	2	553.748713	1105.48287	-0.15348	-8.4991E-05	-0.60791	-0.00033663	-0.7614	-0.00042162	553.7484805161342	48.541	0.40464	48.541	48.274	48.679	0					11	7	2	0	0	0	0.69583	1	17178	17178		36.044	12.896	1	906400	+		12276	27791	8831	8902	11969	11969					-0.06564894975895186
EQSGLGLGL	9	Unmodified	_EQSGLGLGL_					0	0	0			REV__nc|ENSG00000118094|O43280-2|TREH	REV__nc|ENSG00000118094|O43280-2|TREH	MSMS	A375_MHC_IP_R1	1	437.2701416015625	2	437.23745	872.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.345	1	27.345	26.845	27.845	0								0	0	0	0.14677	1	8280	8280		26.884	0	1		+		12277	18028	8832	8903	11970	11970					0.019015056264720442
EQSILYYAE	9	Unmodified	_EQSILYYAE_					0	0	0		ENST00000297689.3_1_9:94171536-94171620:-|nuORF	ENST00000297689.3_1_9:94171536-94171620:-|nuORF	ENST00000297689.3_1_9:94171536-94171620:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	557.6798095703125	2	558.266404	1114.51826	-0.77632	-0.00043339	-3.3547	-0.0018728	-4.1311	-0.0023062	558.2623775418441	80.687	0.66197	81.432	81.011	81.673	0.74474					16	10	3	0	0	0	0.60917	1	30722	30722		19.257	0	1	2693100			12278	10517	8833	8904	11971	11971					-0.03442277238787028
EQSKIEKLRP	10	Unmodified	_EQSKIEKLRP_					0	0	0			REV__NRG1|p.M42I|1|0.17|ENSG00000157168|chr8:32595853-32595853|G/A|missense_variant	REV__NRG1|p.M42I|1|0.17|ENSG00000157168|chr8:32595853-32595853|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	410.3067321777344	3	409.906705	1226.69829	-0.29357	-0.00012034	0.30406	0.00012464	0.010485	4.2977E-06	409.90672453388527	23.813	0.30433	23.813	23.687	23.991	0					7	5	2	0	0	0	0.94363	1	6656	6656		5.4027	2.7715	1	4233000	+		12279	27629	8834	8905	11972	11972					0.09400446488893976
EQSKIEKLRP	10	Unmodified	_EQSKIEKLRP_					0	0	0			REV__NRG1|p.M42I|1|0.17|ENSG00000157168|chr8:32595853-32595853|G/A|missense_variant	REV__NRG1|p.M42I|1|0.17|ENSG00000157168|chr8:32595853-32595853|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	409.906705	1226.69829	-0.3351	-0.00013736	0.32707	0.00013407	-0.00803	-3.2916E-06	410.2411478062959	22.884	0.35782	23.515	23.317	23.675	0.63014	-0.14924	1.536E-05	NaN	5.4027	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2026400	+		12280	27629	8834	8905							0.09400446488893976
EQSLRRQAY	9	Unmodified	_EQSLRRQAY_					0	0	0		nc|ENSG00000237515|B4DS77-2|SHISA9;ENSG00000237515|ENST00000558583|SHISA9	nc|ENSG00000237515|B4DS77-2|SHISA9	nc|ENSG00000237515|B4DS77-2|SHISA9	MULTI-SECPEP	A375_MHC_IP_R1	1	576.2391967773438	2	575.801811	1149.58907	-0.23456	-0.00013506	1.4462	0.0008327	1.2116	0.00069764	575.8026779024198	76.219	0.35337	76.219	75.966	76.319	0					9	6	2	0	0	0	0.73363	1	27816	27816		10.824	0	1	1023600			12281	9757	8835	8906	11973	11973					0.020258605894241555
EQSSKIMDV	9	Unmodified	_EQSSKIMDV_					0	0	0		tr|U7SJI0|U7SJI0_FUSNUPyridoxalphosphatehomeostasisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02052PE=3SV=1	tr|U7SJI0|U7SJI0_FUSNUPyridoxalphosphatehomeostasisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02052PE=3SV=1	tr|U7SJI0|U7SJI0_FUSNUPyridoxalphosphatehomeostasisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02052PE=3SV=1	MSMS	A375_MHC_IP_R2	2	518.731201171875	2	518.752607	1035.49066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.357	1	71.091	70.591	71.591	0.73421								0	0	0	0.15411	1	26673	26673		14.838	4.0143	1				12282	29453	8836	8907	11974	11974					-0.025665037706403382
EQSTSPTPPIS	11	Unmodified	_EQSTSPTPPIS_					0	0	0			REV__ENSG00000204172|ENST00000452145|AGAP9	REV__ENSG00000204172|ENST00000452145|AGAP9	MULTI-SECPEP	A375_MHC_IP_R2	2	572.678955078125	2	572.280043	1142.54553	-0.1205	-6.8959E-05	-2.0249	-0.0011588	-2.1454	-0.0012278	572.2791075650792	86.425	0.61273	87.158	86.794	87.407	0.73301					17	11	2	0	0	0	0.9836	1	32884	32884		11.495	1.4208	1	2564000	+		12283	22491	8837	8908	11975	11975					-0.020037936983726468
EQSVMHESNY	10	Unmodified	_EQSVMHESNY_					0	0	0			REV__ENSG00000145414|ENST00000274054|NAF1	REV__ENSG00000145414|ENST00000274054|NAF1	MULTI-SECPEP	A375_MHC_IP_R2	2	612.1981201171875	2	612.253502	1222.49245	-0.43348	-0.0002654	-2.8445	-0.0017416	-3.278	-0.002007	612.252046449921	89.925	0.45958	90.657	90.442	90.902	0.7318					12	8	2	0	0	0	0.93194	1	34296	34296		5.7319	2.7366	1	1137300	+		12284	19472	8838	8909	11976	11976					-0.10989494752675455
EQSVMHESNY	10	Unmodified	_EQSVMHESNY_					0	0	0			REV__ENSG00000145414|ENST00000274054|NAF1	REV__ENSG00000145414|ENST00000274054|NAF1	MULTI-MATCH	A375_MHC_IP_R1	1		2	612.253502	1222.49245	-0.53745	-0.00032906	-2.2092	-0.0013526	-2.7467	-0.0016817	612.2515151655253	90.436	0.35635	90.436	90.285	90.641	0	-0.11009	0.00017145	NaN	5.7319	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1116900	+		12285	19472	8838	8909							-0.10989494752675455
EQTAALAL	8	Unmodified	_EQTAALAL_					0	0	0			REV__OSR1|p.N121S|1|0.32|ENSG00000143867|chr2:19353444-19353444|T/C|missense_variant	REV__OSR1|p.N121S|1|0.32|ENSG00000143867|chr2:19353444-19353444|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	816.8445434570312	1	816.44616	815.438883	-0.74405	-0.00060748	-0.65797	-0.00053719	-1.402	-0.0011447	816.4453723585865	149.84	0.23109	149.84	149.77	150	0					37	22	2	0	0	0	0.972	1	57177	57177		0.69038	0	1	121590	+		12286	19394	8839	8910	11977	11977					0.02378120597745692
EQTAVASYHC	10	Unmodified	_EQTAVASYHC_					0	0	0			REV__ENST00000432045.6_1_7:130565395-130565941:-|nuORF	REV__ENST00000432045.6_1_7:130565395-130565941:-|nuORF	MSMS	A375_MHC_IP_R1	1	554.6927490234375	2	554.740031	1107.46551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.601	1	32.601	32.101	33.101	0								0	0	0	0.15038	1	10549	10549		17.113	0.1706	1		+		12287	24707	8840	8911	11978	11978					-0.08392558573223141
EQTHGQLL	8	Unmodified	_EQTHGQLL_					0	0	0		ENSG00000188039|ENST00000524140|NWD1;ENST00000438489.6_1_19:16849058-16926137:+|nuORF;nc|ENSG00000188039|Q149M9|NWD1	ENSG00000188039|ENST00000524140|NWD1	ENSG00000188039|ENST00000524140|NWD1	MULTI-MSMS	A375_MHC_IP_R2	2	463.6763000488281	2	463.240524	924.466495	-0.73079	-0.00033853	-0.064157	-2.972E-05	-0.79495	-0.00036825	463.24049081709506	72.227	0.65793	72.961	72.72	73.377	0.73421					17	12	2	0	0	0	0.77123	1	27350	27350		14.582	2.0501	1	1153000			12288	8877	8841	8912	11979	11979					0.0012402385799532567
EQTIRNFSI	9	Unmodified	_EQTIRNFSI_					0	0	0			REV__KDM4D|p.P260S|1|0.28|ENSG00000186280|chr11:94998150-94998150|C/T|missense_variant	REV__KDM4D|p.P260S|1|0.28|ENSG00000186280|chr11:94998150-94998150|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	553.6613159179688	2	554.293288	1106.57202	-0.17888	-9.9154E-05	-0.41642	-0.00023082	-0.5953	-0.00032997	554.2928208342655	48.429	0.70929	48.429	48.071	48.78	0					20	13	2	0	0	0	0.63327	1	17178	17178		18.146	11.516	1	4751700	+		12289	26836	8842	8913	11980	11980					0.0229993998361806
EQTKFFFN	8	Unmodified	_EQTKFFFN_					0	0	0			REV__nc|ENSG00000163535|Q562F6-2|SGO2	REV__nc|ENSG00000163535|Q562F6-2|SGO2	MSMS	A375_MHC_IP_R1	1	530.6751098632812	2	530.758549	1059.50255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.625	1	31.625	31.125	32.125	0								0	0	0	0.16876	1	10140	10140		28.487	3.0875	1		+		12290	20376	8843	8914	11981	11981					-0.02482518965143754
EQTLQHFAE	9	Unmodified	_EQTLQHFAE_					0	0	0			REV__TTC29|p.G214E|1|0.12|ENSG00000137473|chr4:146874874-146874874|C/T|missense_variant	REV__TTC29|p.G214E|1|0.12|ENSG00000137473|chr4:146874874-146874874|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2083129882812	2	551.76182	1101.50909	-0.92651	-0.00051122	3.609	0.0019913	2.6825	0.0014801	551.7626006808931	67.696	0.91167	67.696	67.399	68.31	0					25	17	2	0	0	0	0.63327	1	24495	24495		18.146	2.2992	1	811430	+		12291	28924	8844	8915	11982	11982					-0.03760625804443407
EQTNEEDNQGK	11	Unmodified	_EQTNEEDNQGK_					0	0	0			REV__ENST00000494602.5_1_20:13976409-14547255:+|nuORF	REV__ENST00000494602.5_1_20:13976409-14547255:+|nuORF	MSMS	A375_MHC_IP_R2	2	646.2217407226562	2	646.273478	1290.5324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.94	1	99.7	99.2	100.2	0.75977								0	0	0	0.14837	1	37531	37531		21.537	1.0834	1		+		12292	21132	8845	8916	11983	11983					-0.10124276548435773
EQTRRQQLRLQ	11	Unmodified	_EQTRRQQLRLQ_					0	0	0			REV__nc|ENSG00000141052|Q8IZQ8|MYOCD	REV__nc|ENSG00000141052|Q8IZQ8|MYOCD	MULTI-SECPEP	A375_MHC_IP_R1	1	728.260498046875	2	728.41058	1454.80661	-0.81629	-0.0005946	1.3839	0.001008	0.56758	0.00041343	728.4113873855467	133.48	0.61249	133.48	133.15	133.76	0					16	11	2	0	0	0	0.99732	1	51508	51508		4.897	0	1	1586600	+		12293	19242	8846	8917	11984	11984					0.0973963079202349
EQTWRRFTIDR	11	Unmodified	_EQTWRRFTIDR_					0	0	0		ENST00000335934.8_1_2:24300319-24300442:-|nuORF	ENST00000335934.8_1_2:24300319-24300442:-|nuORF	ENST00000335934.8_1_2:24300319-24300442:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	503.642333984375	3	503.263663	1506.76916	-1.0352	-0.00052099	-0.72868	-0.00036672	-1.7639	-0.00088771	503.2633945226768	38.45	0.4054	39.225	39.047	39.453	0.77451					13	7	2	0	0	0	0.99661	1	14136	14136		5.1984	5.1984	1	3725800			12294	10811	8847	8918	11985	11985					0.036045395264181934
EQTWRRFTIDR	11	Unmodified	_EQTWRRFTIDR_					0	0	0		ENST00000335934.8_1_2:24300319-24300442:-|nuORF	ENST00000335934.8_1_2:24300319-24300442:-|nuORF	ENST00000335934.8_1_2:24300319-24300442:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	503.263663	1506.76916	-0.18598	-9.3595E-05	-0.77273	-0.00038889	-0.9587	-0.00048248	503.26337228849957	39.208	0.35789	39.208	39.033	39.391	0	-0.0084008	-3.0321E-05	NaN	5.1984	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2686300			12295	10811	8847	8918							0.036045395264181934
EQVAQKFERAF	11	Unmodified	_EQVAQKFERAF_					0	0	0			REV__nc|ENSG00000226807|Q6ZUA9|MROH5	REV__nc|ENSG00000226807|Q6ZUA9|MROH5	MSMS	A375_MHC_IP_R1	1	451.6585693359375	3	451.570093	1351.68845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.75	1	33.75	33.25	34.25	0								0	0	0	0.16172	1	11052	11052		9.7643	0.788	1		+		12296	27507	8848	8919	11986	11986					0.02667258483529622
EQVAVCQYCC	10	Unmodified	_EQVAVCQYCC_					0	0	0		ENSG00000171206|ENST00000643721|TRIM8	ENSG00000171206|ENST00000643721|TRIM8	ENSG00000171206|ENST00000643721|TRIM8	MSMS	A375_MHC_IP_R1	1	573.2144165039062	2	573.224845	1144.43514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.949	1	68.949	68.449	69.449	0								0	0	0	0.15391	1	25013	25013		8.1555	2.8586	1				12297	7581	8849	8920	11987	11987					-0.13130376554272516
EQVETLHEF	9	Unmodified	_EQVETLHEF_					0	0	0			REV__ENST00000356554.7_1_1:117910409-117910514:+|nuORF	REV__ENST00000356554.7_1_1:117910409-117910514:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	567.16845703125	2	566.269478	1130.5244	-0.57835	-0.0003275	-2.4425	-0.0013831	-3.0209	-0.0017106	566.2696476505938	40.74	0.55994	41.515	41.234	41.794	0.77451					31	10	4	0	0	0	0.17328	1	15076	15076		39.957	4.3451	1	23244000	+		12298	23834	8850	8921	11988	11988					-0.03563759007238332
EQVHFAVSV	9	Unmodified	_EQVHFAVSV_					0	0	0			REV__ENST00000586178.5_1_17:49296359-49302518:-|nuORF	REV__ENST00000586178.5_1_17:49296359-49302518:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	508.21856689453125	2	508.263999	1014.51345	-0.48968	-0.00024889	0.3277	0.00016656	-0.16199	-8.2332E-05	508.2638981489888	76.571	0.55904	76.571	76.319	76.878	0					29	10	3	0	0	0	0.63811	1	27856	27856		12.532	0.89125	1	5650200	+		12299	26383	8851	8922	11989	11989					0.006768834091417375
EQVNNVGI	8	Unmodified	_EQVNNVGI_					0	0	0			REV__nc|ENSG00000197429|Q9Y573-2|IPP	REV__nc|ENSG00000197429|Q9Y573-2|IPP	MULTI-MSMS	A375_MHC_IP_R1	1	437.127197265625	2	436.727249	871.439946	-0.052228	-2.2809E-05	0.11387	4.973E-05	0.06164	2.692E-05	436.7272049516678	35.155	0.66134	35.155	34.912	35.573	0					16	12	2	0	0	0	0.61116	1	11675	11675		44.407	3.9584	1	2147800	+		12300	22288	8852	8923	11990	11990					-0.0009166503333517539
EQVPYTRGY	9	Unmodified	_EQVPYTRGY_					0	0	0			REV__ENSG00000135829|ENST00000367549|DHX9	REV__ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	A375_MHC_IP_R2	2	556.75048828125	2	556.772188	1111.52982	-0.69422	-0.00038652	-0.51052	-0.00028424	-1.2047	-0.00067077	556.7712305282373	69.792	0.20511	70.526	70.386	70.591	0.73421					5	3	2	0	0	0	0.64136	1	26454	26454		12.241	0.60036	1	1057700	+		12301	18889	8853	8924	11991	11991					-0.02148035424761474
EQVQHTLEEF	10	Unmodified	_EQVQHTLEEF_					0	0	0			REV__nc|ENSG00000154642|Q9NYK6-3|EURL	REV__nc|ENSG00000154642|Q9NYK6-3|EURL	MULTI-SECPEP	A375_MHC_IP_R2	2	630.6707153320312	2	630.298767	1258.58298	-0.70084	-0.00044174	0.55245	0.00034821	-0.14838	-9.3526E-05	630.2992231803767	43.162	0.30385	43.934	43.724	44.028	0.7724					12	5	3	0	0	0	0.77204	1	16052	16052		11.495	0	1	1677700	+		12302	19890	8854	8925	11992	11992					-0.03596702432764687
EQVRRIKAF	9	Unmodified	_EQVRRIKAF_					0	0	0			REV__ENSG00000183196|ENST00000332272|CHST6	REV__ENSG00000183196|ENST00000332272|CHST6	MULTI-SECPEP	A375_MHC_IP_R1	1	573.4368286132812	2	573.840739	1145.66693	0.15171	8.706E-05	-3.737	-0.0021445	-3.5853	-0.0020574	573.8385845620911	44.497	0.25611	44.497	44.37	44.626	0					6	4	2	0	0	0	0.75466	1	15576	15576		4.3292	0	1	1072300	+		12303	21738	8855	8926	11993	11993					0.09991918245441411
EQVRSAAVQL	10	Unmodified	_EQVRSAAVQL_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;nc|ENSG00000149262|Q96HW7-3|INTS4;ENST00000433818.6_1_11:77629258-77692594:-|nuORF;nc|ENSG00000149262|Q96HW7-2|INTS4	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-SECPEP	A375_MHC_IP_R2	2	550.1766357421875	2	550.806562	1099.59857	-0.95052	-0.00052355	1.0687	0.00058862	0.11814	6.5072E-05	550.8060202244599	54.773	0.45922	55.524	55.32	55.779	0.75075					13	8	2	0	0	0	0.62001	1	20729	20729		27.223	4.5652	1	1264200			12304	5794	8856	8927	11994	11994					0.052756288749378655
EQVSLPGRFV	10	Unmodified	_EQVSLPGRFV_					0	0	0			REV__ENSG00000122482|ENST00000337393|ZNF644	REV__ENSG00000122482|ENST00000337393|ZNF644	MULTI-SECPEP	A375_MHC_IP_R2	2	566.7115478515625	2	566.31148	1130.60841	-0.59269	-0.00033565	0.35507	0.00020108	-0.23762	-0.00013457	566.3116958867978	40.773	0.40733	41.548	41.285	41.692	0.77451					15	7	3	0	0	0	0.76274	1	15123	15123		36.506	8.0117	1	4024200	+		12305	18208	8857	8928	11995	11995					0.04832816880320934
EQVTIMDAFE	10	Unmodified	_EQVTIMDAFE_					0	0	0			REV__nc|ENSG00000137807|Q02241-2|KIF23	REV__nc|ENSG00000137807|Q02241-2|KIF23	MULTI-MSMS	A375_MHC_IP_R2	2	591.6826171875	2	591.770997	1181.52744	-0.71931	-0.00042567	0.75404	0.00044622	0.03473	2.0552E-05	591.771389396101	48.996	0.76211	49.754	49.434	50.196	0.75737					18	14	2	0	0	0	0.52785	1	18550	18550		26.268	3.5319	1	2871200	+		12306	15713	8858	8929	11996	11996					-0.05606251944732321
EQWEMVGRWV	10	Unmodified	_EQWEMVGRWV_					0	0	0			REV__ENST00000498792.1_1_3:120025975-120026458:+|nuORF	REV__ENST00000498792.1_1_3:120025975-120026458:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	660.21240234375	2	660.313697	1318.61284	-0.67327	-0.00044457	0.1243	8.2074E-05	-0.54897	-0.00036249	660.3138046554194	53.087	0.55634	53.087	52.643	53.199	0					15	10	2	0	0	0	0.70651	1	18905	18905		9.3831	9.3831	1	2454800	+		12307	25481	8859	8930	11997	11997					-0.03372041968418671
EQWKKQFDDLY	11	Unmodified	_EQWKKQFDDLY_					0	0	0			REV__ENSG00000118137|ENST00000236850|APOA1	REV__ENSG00000118137|ENST00000236850|APOA1	MSMS	A375_MHC_IP_R2	2	500.4744873046875	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.907	1	91.641	91.141	92.141	0.7345								0	0	0	0.16179	1	34588	34588		4.7159	3.3863	1		+		12308	18031	8860	8931	11998	11998					-0.020161959274446417
EQWLKREKEEE	11	Unmodified	_EQWLKREKEEE_					0	0	0		ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	MULTI-SECPEP	A375_MHC_IP_R2	2	501.2106628417969	3	501.91945	1502.73652	-0.81795	-0.00041054	2.9705	0.001491	2.1525	0.0010804	501.92062183778677	34.889	0.30273	35.652	35.475	35.778	0.76338					8	5	2	0	0	0	0.99916	1	12666	12666		2.4348	0	1	1672500			12309	8512	8861	8932	11999	11999					0.005262876129336291
EQWYSFNDQH	10	Unmodified	_EQWYSFNDQH_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MULTI-MSMS	A375_MHC_IP_R2	2	452.15789794921875	3	451.854669	1352.54218	-0.31464	-0.00014217	0.12342	5.5766E-05	-0.19122	-8.6404E-05	451.8545196865005	32.537	0.66116	33.274	33.061	33.722	0.73691					25	12	3	0	0	0	0.71245	1	11701	11701		3.5871	0.95582	1	3864600			12310	7484	8862	8933	12000	12000					-0.11999043752371108
EQYDGEMEE	9	Unmodified	_EQYDGEMEE_					0	0	0			REV__ENSG00000011007|ENST00000613537|ELOA	REV__ENSG00000011007|ENST00000613537|ELOA	MULTI-SECPEP	A375_MHC_IP_R2	2	564.7578125	2	565.203144	1128.39173	-0.3593	-0.00020308	3.8129	0.002155	3.4536	0.001952	565.2073534030637	91.257	0.25342	91.992	91.818	92.071	0.73451					5	4	2	0	0	0	0.73363	1	34722	34722		10.824	6.4947	1	375650	+		12311	16200	8863	8934	12001	12001					-0.16732571526199536
EQYENTRTY	9	Unmodified	_EQYENTRTY_					0	0	0		ENST00000523948.5_1_8:56686169-56737149:+|nuORF;ENSG00000137574|ENST00000260129|TGS1	ENST00000523948.5_1_8:56686169-56737149:+|nuORF	ENST00000523948.5_1_8:56686169-56737149:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	601.6531372070312	2	602.267467	1202.52038	-0.73631	-0.00044346	-0.026557	-1.5994E-05	-0.76287	-0.00045945	602.7688014717971	41.073	0.50777	41.847	41.54	42.047	0.77451					13	9	2	0	0	0	0.73363	1	15208	15208		10.824	10.824	1	1601600			12312	4897	8864	8935	12002	12002					-0.07277848500939399
EQYKQRRRT	9	Unmodified	_EQYKQRRRT_					0	0	0			REV__nc|ENSG00000028116|Q86Y07-4|VRK2	REV__nc|ENSG00000028116|Q86Y07-4|VRK2	MSMS	A375_MHC_IP_R1	1	422.2333068847656	3	422.233815	1263.67962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.706	1	17.706	17.206	18.206	0								0	0	0	0.15486	1	4167	4167		0.26902	0.1097	1		+		12313	16293	8865	8936	12003	12003					0.05832329637678413
EQYPRDWHLWY	11	Unmodified	_EQYPRDWHLWY_					0	0	0		nc|ENSG00000183914|Q9P225-2|DNAH2;ENSG00000183914|ENST00000572933|DNAH2	nc|ENSG00000183914|Q9P225-2|DNAH2	nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-MSMS	A375_MHC_IP_R1	1	797.7679443359375	2	796.867682	1591.72081	-0.25915	-0.00020651	-1.2852	-0.0010241	-1.5443	-0.0012306	796.8665368594795	111.42	0.46114	111.42	111.16	111.62	0					14	8	2	0	0	0	0.73897	1	40869	40869		0.35063	0	1	2309500			12314	8541	8866	8937	12004	12004					-0.05137954113479282
EQYPRDWHLWY	11	Unmodified	_EQYPRDWHLWY_					0	0	0		nc|ENSG00000183914|Q9P225-2|DNAH2;ENSG00000183914|ENST00000572933|DNAH2	nc|ENSG00000183914|Q9P225-2|DNAH2	nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-MATCH	A375_MHC_IP_R2	2		2	796.867682	1591.72081	-0.76942	-0.00061312	-0.16673	-0.00013287	-0.93615	-0.00074599	796.8669249223241	110.78	0.4558	111.52	111.24	111.7	0.73692	0.05277	0.0010919	NaN	0.35063	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2942800			12315	8541	8866	8937							-0.05137954113479282
EQYQQILAEIF	11	Unmodified	_EQYQQILAEIF_					0	0	0			REV__nc|ENSG00000158022|Q969Q1-2|TRIM63	REV__nc|ENSG00000158022|Q969Q1-2|TRIM63	MULTI-MSMS	A375_MHC_IP_R2	2	691.7530517578125	2	691.353542	1380.69253	-0.50229	-0.00034726	-1.1038	-0.00076313	-1.6061	-0.0011104	691.3526738883266	85.79	0.60934	86.527	86.239	86.848	0.73601					35	11	4	0	0	0	0.72728	1	32570	32570		11.495	4.393	1	20830000	+		12316	20057	8867	8938	12005	12005					0.017413031865544326
EQYQQILAEIF	11	Unmodified	_EQYQQILAEIF_					0	0	0			REV__nc|ENSG00000158022|Q969Q1-2|TRIM63	REV__nc|ENSG00000158022|Q969Q1-2|TRIM63	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	691.353542	1380.69253	-0.80583	-0.00055712	-0.78306	-0.00054137	-1.5889	-0.0010985	691.3528345726813	86.558	0.50692	86.558	86.224	86.73	0	0.015524	0.00014296	NaN	11.495	28	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16966000	+		12317	20057	8867	8938							0.017413031865544326
EQYVEKLQ	8	Unmodified	_EQYVEKLQ_					0	0	0			REV__REPS2|p.H641Y|1|0.9|ENSG00000169891|chrX:17147419-17147419|C/T|missense_variant	REV__REPS2|p.H641Y|1|0.9|ENSG00000169891|chrX:17147419-17147419|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	1036.61669921875	1	1036.53095	1035.52368	-0.26552	-0.00027522	3.6201	0.0037524	3.3546	0.0034771	1036.535312632348	61.169	0.30161	61.914	61.769	62.07	0.74503					6	5	2	0	0	0	0.972	1	23239	23239		8.5933	0	1	1008500	+		12318	27881	8868	8939	12006	12006					0.007334463437246086
ERAKRLQQL	9	Unmodified	_ERAKRLQQL_					0	0	0		ENST00000332211.10_2_10:76970615-76972015:+|nuORF	ENST00000332211.10_2_10:76970615-76972015:+|nuORF	ENST00000332211.10_2_10:76970615-76972015:+|nuORF	MSMS	A375_MHC_IP_R2	2	381.27642822265625	3	381.231523	1140.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.4	1	30.098	29.598	30.598	0.69872								0	0	0	0.14656	1	10259	10259		27.223	4.5652	1				12319	10775	8869	8940	12007	12007					0.10803016757131445
ERAPVDVP	8	Unmodified	_ERAPVDVP_					0	0	0			REV__ENST00000379589.3_1_13:40175494-40177154:-|nuORF	REV__ENST00000379589.3_1_13:40175494-40177154:-|nuORF	MSMS	A375_MHC_IP_R2	2	441.6781005859375	2	441.737617	881.460681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.683	1	19.287	18.787	19.787	0.60308								0	0	0	0.16876	1	5569	5569		0.6015	0	1		+		12320	24202	8870	8941	12008	12008					0.015209253463240202
ERCFEHKIFTY	11	Unmodified	_ERCFEHKIFTY_					0	0	0			REV__ENST00000512410.1_1_4:175416602-175443578:-|nuORF	REV__ENST00000512410.1_1_4:175416602-175443578:-|nuORF	MSMS	A375_MHC_IP_R2	2	491.471923828125	3	491.571216	1471.69182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.262	1	97.012	96.512	97.512	0.75045								0	0	0	0.16269	1	36551	36551		4.7159	0	1		+		12321	25625	8871	8942	12009	12009					-0.025158147341471704
ERDFQGYKV	9	Unmodified	_ERDFQGYKV_					0	0	0			REV__ENSG00000179776|ENST00000341529|CDH5	REV__ENSG00000179776|ENST00000341529|CDH5	MULTI-MSMS	A375_MHC_IP_R1	1	571.6849365234375	2	571.285463	1140.55637	-0.22131	-0.00012643	0.20763	0.00011862	-0.013679	-7.8149E-06	571.2854579916924	34.957	0.45863	34.957	34.81	35.269	0					13	8	2	0	0	0	0.44024	1	11592	11592		22.736	2.2827	1	5940700	+		12322	21579	8872	8943	12010	12010					-0.008283465334443463
ERDFQGYKV	9	Unmodified	_ERDFQGYKV_					0	0	0			REV__ENSG00000179776|ENST00000341529|CDH5	REV__ENSG00000179776|ENST00000341529|CDH5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	571.285463	1140.55637	-0.61906	-0.00035366	-0.24404	-0.00013942	-0.8631	-0.00049308	571.2851659703277	34.228	0.30675	34.98	34.853	35.16	0.75225	0.011663	-0.00030435	NaN	22.736	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6109600	+		12323	21579	8872	8943							-0.008283465334443463
ERDFTPPWW	9	Unmodified	_ERDFTPPWW_					0	0	0		ENST00000256999.6_1_11:49230014-49230161:-|nuORF	ENST00000256999.6_1_11:49230014-49230161:-|nuORF	ENST00000256999.6_1_11:49230014-49230161:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	411.28143310546875	3	411.861096	1232.56146	-0.26483	-0.00010907	-4.1009	-0.001689	-4.3657	-0.0017981	411.85962011695966	19.237	0.15112	19.84	19.733	19.884	0.60308					4	2	2	0	0	0	0.75466	1	5897	5897		4.897	0	1	343060			12324	10246	8873	8944	12011	12011					-0.045520426708208106
ERDLPRLTQLL	11	Unmodified	_ERDLPRLTQLL_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	A375_MHC_IP_R2	2	677.79443359375	2	677.396076	1352.7776	-0.4767	-0.00032292	-0.81075	-0.0005492	-1.2875	-0.00087212	677.3949825559685	143.24	0.95798	143.26	142.63	143.59	0.024414					33	18	3	0	0	0	0.73818	1	55950	55950		2.7352	0	1	2259000	+		12325	20671	8874	8945	12012	12012					0.1153209344302013
ERDLPRLTQLL	11	Unmodified	_ERDLPRLTQLL_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	677.396076	1352.7776	-0.98741	-0.00066887	-0.59228	-0.00040121	-1.5797	-0.0010701	677.3954398327375	143.21	0.80188	143.21	142.74	143.54	0	-0.025182	0.00011379	NaN	2.7352	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2325500	+		12326	20671	8874	8945							0.1153209344302013
ERDLPRLTQLL	11	Unmodified	_ERDLPRLTQLL_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	677.396076	1352.7776	-0.4767	-0.00032292	-0.81075	-0.0005492	-1.2875	-0.00087212	677.3949825559685	143.24	0.95798	143.26	142.63	143.59	0.024414	0.025182	-0.00018219	NaN	2.7352	33	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2259000	+		12327	20671	8874	8945							0.1153209344302013
ERDQFSQESG	10	Unmodified	_ERDQFSQESG_					0	0	0		nc|ENSG00000163749|Q5M9N0|CCDC158;ENSG00000163749|ENST00000682701|CCDC158	nc|ENSG00000163749|Q5M9N0|CCDC158	nc|ENSG00000163749|Q5M9N0|CCDC158	MSMS	A375_MHC_IP_R1	1	591.8522338867188	2	591.754724	1181.49489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.59	1	101.59	101.09	102.09	0								0	0	0	0.15265	1	37334	37334		12.241	2.8575	1				12328	6714	8875	8946	12013	12013					-0.0885932302337551
ERDQIIKKLIQ	11	Unmodified	_ERDQIIKKLIQ_					0	0	0		nc|ENSG00000111879|Q8NB25-2|FAM184A	nc|ENSG00000111879|Q8NB25-2|FAM184A	nc|ENSG00000111879|Q8NB25-2|FAM184A	MULTI-MSMS	A375_MHC_IP_R1	1	462.34832763671875	3	461.948793	1382.82455	-0.55133	-0.00025469	-0.55936	-0.0002584	-1.1107	-0.00051308	461.9484414910522	137.57	2.5968	137.57	137.23	139.83	0					135	50	5	0	0	0	0.73891	1	53629	53629		0.40827	0	1	39729000			12329	14545	8876	8947	12014	12014					0.14844952994189953
ERDQIIKKLIQ	11	Unmodified	_ERDQIIKKLIQ_					0	0	0		nc|ENSG00000111879|Q8NB25-2|FAM184A	nc|ENSG00000111879|Q8NB25-2|FAM184A	nc|ENSG00000111879|Q8NB25-2|FAM184A	MSMS	A375_MHC_IP_R1	1	461.7451171875	3	461.948793	1382.82455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.05	1	142.05	141.55	142.55	0								0	0	0	0.16352	1	54510	54510		0.40827	0	1				12330	14545	8876	8947	12015	12015					0.14844952994189953
ERDQIIKKLIQ	11	Unmodified	_ERDQIIKKLIQ_					0	0	0		nc|ENSG00000111879|Q8NB25-2|FAM184A	nc|ENSG00000111879|Q8NB25-2|FAM184A	nc|ENSG00000111879|Q8NB25-2|FAM184A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	461.948793	1382.82455	-0.30893	-0.00014271	-0.75579	-0.00034914	-1.0647	-0.00049185	461.9483413118165	137.55	1.5226	137.63	137.4	138.92	0.083969	0.03411	-9.3416E-05	NaN	0.40827	83	29	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39297000			12331	14545	8876	8947							0.14844952994189953
EREDHTNCKYY	11	Unmodified	_EREDHTNCKYY_					0	0	0			REV__nc|ENSG00000102893|Q93100-2|PHKB	REV__nc|ENSG00000102893|Q93100-2|PHKB	MULTI-SECPEP	A375_MHC_IP_R1	1	729.0944213867188	2	729.30934	1456.60413	-0.76644	-0.00055897	-2.9746	-0.0021694	-3.7411	-0.0027284	729.8076187065549	124.87	0.19977	124.87	124.75	124.95	0					6	3	2	0	0	0	0.99424	1	47264	47264		4.897	3.7037	1	50870000	+		12332	17238	8877	8948	12016	12016					-0.10591060395563545
EREHQEREPD	10	Unmodified	_EREHQEREPD_					0	0	0		nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	MULTI-MSMS	A375_MHC_IP_R2	2	662.7131958007812	2	662.797454	1323.58036	-0.87517	-0.00058006	-0.77582	-0.00051421	-1.651	-0.0010943	662.7967543612582	75.578	0.5115	76.319	75.976	76.487	0.74052					13	9	2	0	0	0	0.66857	1	28626	28626		13.042	0	1	1440200			12333	3143	8878	8949	12017	12017					-0.06849157837723396
EREQWEQRQRW	11	Unmodified	_EREQWEQRQRW_					0	0	0			REV__ENSG00000159450|ENST00000614923|TCHH	REV__ENSG00000159450|ENST00000614923|TCHH	MSMS	A375_MHC_IP_R1	1	815.7964477539062	2	815.895294	1629.77604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.683	1	82.683	82.183	83.183	0								0	0	0	0.16352	1	30241	30241		0.26902	0	1		+		12334	20121	8879	8950	12018	12018					-0.013661475930121014
ERERIFCFRY	10	Unmodified	_ERERIFCFRY_					0	0	0			REV__ENST00000333916.7_1_9:26861095-26861128:-|nuORF	REV__ENST00000333916.7_1_9:26861095-26861128:-|nuORF	MSMS	A375_MHC_IP_R1	1	709.5125732421875	2	709.853521	1417.69249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.068	1	65.068	64.568	65.568	0								0	0	0	0.15465	1	23553	23553		5.7319	0	1		+		12335	23650	8880	8951	12019	12019					0.0003502470556213666
ERERLEEATM	10	Unmodified	_ERERLEEATM_					0	0	0			REV__ENST00000536336.5_1_11:18633859-18655855:-|nuORF	REV__ENST00000536336.5_1_11:18633859-18655855:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	421.97454833984375	3	421.871443	1262.5925	-0.39281	-0.00016571	1.2555	0.00052967	0.86271	0.00036395	421.8718829365251	19.127	0.30101	19.73	19.583	19.884	0.60308					10	5	2	0	0	0	0.93232	1	5802	5802		10.899	6.4928	1	3236400	+		12336	21544	8881	8952	12020	12020					-0.028292574188981234
ERESLFYE	8	Unmodified	_ERESLFYE_					0	0	0			REV__tr|U7T564|U7T564_FUSNUDNArepairproteinRadAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=radAPE=3SV=1	REV__tr|U7T564|U7T564_FUSNUDNArepairproteinRadAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=radAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1510620117188	2	536.750921	1071.48729	-0.65333	-0.00035068	0.57657	0.00030947	-0.076764	-4.1203E-05	536.7511587985509	31.692	0.55876	31.692	31.414	31.973	0					18	10	2	0	0	0	0.46048	1	10168	10168		46.021	0	1	5025500	+		12337	28820	8882	8953	12021	12021					-0.045594305529675694
ERETLKVLK	9	Unmodified	_ERETLKVLK_					0	0	0		nc|ENSG00000101974|Q8NB49-2|ATP11C;nc|ENSG00000101974|Q8NB49-3|ATP11C;nc|ENSG00000101974|Q8NB49-4|ATP11C;ENSG00000101974|ENST00000682941|ATP11C;nc|ENSG00000101974|Q8NB49|ATP11C	nc|ENSG00000101974|Q8NB49-2|ATP11C	nc|ENSG00000101974|Q8NB49-2|ATP11C	MULTI-MSMS	A375_MHC_IP_R1	1	372.96435546875	3	372.564279	1114.67101	0.41951	0.00015629	-0.385	-0.00014344	0.034509	1.2857E-05	372.5640755001341	23.1	0.4538	23.1	22.773	23.227	0					13	8	2	0	0	0	0.59859	1	6274	6274		14.957	2.1012	1	4717600			12338	2341	8883	8954	12022	12022					0.11825962948501001
ERETLKVLK	9	Unmodified	_ERETLKVLK_					0	0	0		nc|ENSG00000101974|Q8NB49-2|ATP11C;nc|ENSG00000101974|Q8NB49-3|ATP11C;nc|ENSG00000101974|Q8NB49-4|ATP11C;ENSG00000101974|ENST00000682941|ATP11C;nc|ENSG00000101974|Q8NB49|ATP11C	nc|ENSG00000101974|Q8NB49-2|ATP11C	nc|ENSG00000101974|Q8NB49-2|ATP11C	MULTI-SECPEP	A375_MHC_IP_R2	2	372.9642639160156	3	372.564279	1114.67101	0.1186	4.4185E-05	-0.21731	-8.0962E-05	-0.098714	-3.6777E-05	372.56417318238516	20.424	0.86459	21.034	20.651	21.516	0.61029					28	16	3	0	0	0	0.75782	1	6340	6340		10.899	5.8514	1	2310200			12339	2341	8883	8954	12023	12023					0.11825962948501001
EREWRRVGDYE	11	Unmodified	_EREWRRVGDYE_					0	0	0		ENST00000488653.6_1_3:123680081-123680240:-|nuORF	ENST00000488653.6_1_3:123680081-123680240:-|nuORF	ENST00000488653.6_1_3:123680081-123680240:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	748.4832153320312	2	747.857846	1493.70114	-0.95604	-0.00071498	-1.082	-0.00080921	-2.0381	-0.0015242	747.8572813124781	80.908	0.30755	81.653	81.52	81.828	0.74474					9	5	2	0	0	0	0.73327	1	30754	30754		5.7834	0.88642	1	1829600			12340	12619	8884	8955	12024	12024					-0.025963301242427406
EREYQQKFE	9	Unmodified	_EREYQQKFE_					0	0	0			REV__nc|ENSG00000143776|Q5VT25-4|CDC42BPA	REV__nc|ENSG00000143776|Q5VT25-4|CDC42BPA	MULTI-MSMS	A375_MHC_IP_R1	1	419.93499755859375	3	419.535048	1255.58332	-0.14179	-5.9486E-05	0.07864	3.2992E-05	-0.063149	-2.6493E-05	419.5350437628972	28.988	0.40699	28.988	28.845	29.252	0					10	7	2	0	0	0	0.70886	1	9041	9041		3.8763	1.4415	1	2262700	+		12341	19386	8885	8956	12025	12025					-0.0342528271289666
ERFDARADK	9	Unmodified	_ERFDARADK_					0	0	0			REV__ENSG00000198796|ENST00000361673|ALPK2	REV__ENSG00000198796|ENST00000361673|ALPK2	MULTI-SECPEP	A375_MHC_IP_R1	1	369.9302673339844	3	369.856233	1106.54687	0.3609	0.00013348	-0.34091	-0.00012609	0.019986	7.392E-06	369.85611530522226	23.1	0.30264	23.1	22.924	23.227	0					9	5	2	0	0	0	0.75842	1	6270	6270		8.9762	0	1	1939600	+		12342	22422	8886	8957	12026	12026					-0.0021411481895938778
ERFDLPEKY	9	Unmodified	_ERFDLPEKY_					0	0	0			REV__ENSG00000205765|ENST00000381647|RIMOC1	REV__ENSG00000205765|ENST00000381647|RIMOC1	MULTI-SECPEP	A375_MHC_IP_R1	1	398.9523010253906	3	399.536389	1195.58734	-0.21709	-8.6735E-05	0.48494	0.00019375	0.26785	0.00010702	399.53631137793496	25.216	0.50877	25.216	25.053	25.562	0					25	9	4	0	0	0	0.77396	1	7456	7456		10.151	6.2742	1	7872900	+		12343	22583	8887	8958	12027	12027					-0.0026319321918890637
ERFEKSYLDK	10	Unmodified	_ERFEKSYLDK_					0	0	0			REV__TDG|p.S204Y|1|0.05|ENSG00000139372|chr12:103982931-103982931|C/A|missense_variant	REV__TDG|p.S204Y|1|0.05|ENSG00000139372|chr12:103982931-103982931|C/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	439.2944030761719	3	438.894465	1313.66157	-0.35072	-0.00015393	0.031894	1.3998E-05	-0.31882	-0.00013993	438.8944962016713	39.743	0.40702	40.517	40.32	40.727	0.77451					12	7	2	0	0	0	0.93405	1	14711	14711		1.3296	0	1	3406200	+		12344	28088	8888	8959	12028	12028					0.017281498723150435
ERFIDEPNRF	10	Unmodified	_ERFIDEPNRF_					0	0	0			REV__ENSG00000179407|ENST00000319153|DNAJB8	REV__ENSG00000179407|ENST00000319153|DNAJB8	MULTI-MSMS	A375_MHC_IP_R1	1	441.954345703125	3	441.554443	1321.6415	-0.0074998	-3.3116E-06	-0.15275	-6.7448E-05	-0.16025	-7.0759E-05	441.55433471278076	55.966	0.86336	55.966	55.584	56.447	0					27	16	2	0	0	0	0.71267	1	20058	20058		6.6235	0.84002	1	4192800	+		12345	21561	8889	8960	12029	12029					-0.006456010676402002
ERFLISKAK	9	Unmodified	_ERFLISKAK_					0	0	0			REV__tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1	REV__tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1	MSMS	A375_MHC_IP_R1	1	364.5887451171875	3	364.557236	1090.64988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.297	1	19.297	18.797	19.797	0								0	0	0	0.15486	1	4662	4662		8.9762	1.3673	1		+		12346	28830	8890	8961	12030	12030					0.10817997639651367
ERFQQLELWK	10	Unmodified	_ERFQQLELWK_					0	0	0		METTL22|p.L390F|1|0.29|ENSG00000067365|chr16:8644714-8644714|C/T|missense_variant	METTL22|p.L390F|1|0.29|ENSG00000067365|chr16:8644714-8644714|C/T|missense_variant	METTL22|p.L390F|1|0.29|ENSG00000067365|chr16:8644714-8644714|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	459.9820556640625	3	459.582221	1375.72483	-0.38316	-0.00017609	0.070432	3.2369E-05	-0.31272	-0.00014372	459.5822490108666	27.752	1.3111	27.752	27.027	28.339	0					85	25	5	0	0	0	0.70565	1	8557	8557		9.7643	0.52048	1	70157000			12347	14379	8891	8962	12031	12031					0.05200135380209758
ERFQQLELWK	10	Unmodified	_ERFQQLELWK_					0	0	0		METTL22|p.L390F|1|0.29|ENSG00000067365|chr16:8644714-8644714|C/T|missense_variant	METTL22|p.L390F|1|0.29|ENSG00000067365|chr16:8644714-8644714|C/T|missense_variant	METTL22|p.L390F|1|0.29|ENSG00000067365|chr16:8644714-8644714|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	459.582221	1375.72483	-0.38316	-0.00017609	0.070432	3.2369E-05	-0.31272	-0.00014372	459.5822490108666	27.752	1.3111	27.752	27.027	28.339	0	-0.027551	-6.1599E-05	NaN	9.7643	85	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70157000			12348	14379	8891	8962							0.05200135380209758
ERFRKYLRRLF	11	Unmodified	_ERFRKYLRRLF_					0	0	0		CCR1|p.Q314R|1|0.09|ENSG00000163823|chr3:46203373-46203373|T/C|missense_variant	CCR1|p.Q314R|1|0.09|ENSG00000163823|chr3:46203373-46203373|T/C|missense_variant	CCR1|p.Q314R|1|0.09|ENSG00000163823|chr3:46203373-46203373|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	529.3810424804688	3	528.64756	1582.92085	-0.7429	-0.00039273	-1.2238	-0.00064695	-1.9667	-0.0010397	528.6468980644751	86.378	0.30467	86.378	86.172	86.477	0					10	5	2	0	0	0	1.0012	1	31689	31689		1.2148	1.12	1	2029900			12349	325	8892	8963	12032	12032					0.15270565344758324
ERFRKYLRRLF	11	Unmodified	_ERFRKYLRRLF_					0	0	0		CCR1|p.Q314R|1|0.09|ENSG00000163823|chr3:46203373-46203373|T/C|missense_variant	CCR1|p.Q314R|1|0.09|ENSG00000163823|chr3:46203373-46203373|T/C|missense_variant	CCR1|p.Q314R|1|0.09|ENSG00000163823|chr3:46203373-46203373|T/C|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	528.64756	1582.92085	-0.36849	-0.0001948	-1.8095	-0.00095658	-2.178	-0.0011514	528.6466225221644	85.528	0.50766	86.264	85.933	86.441	0.73601	-0.056946	-0.00039747	NaN	2.6312	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2728700			12350	325	8892	8963							0.15270565344758324
ERFTSLKRF	9	Unmodified	_ERFTSLKRF_					0	0	0			REV__nc|ENSG00000067066|P23497-7|SP100	REV__nc|ENSG00000067066|P23497-7|SP100	MSMS	A375_MHC_IP_R2	2	395.2601318359375	3	395.224257	1182.65094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.207	1	23.838	23.338	24.338	0.63014								0	0	0	0.15468	1	7429	7429		9.544	1.935	1		+		12351	16528	8893	8964	12033	12033					0.06692212008556453
ERFTVPESIS	10	Unmodified	_ERFTVPESIS_					0	0	0			REV__ENSG00000196663|ENST00000359520|TECPR2	REV__ENSG00000196663|ENST00000359520|TECPR2	MULTI-SECPEP	A375_MHC_IP_R1	1	388.9818115234375	3	388.868027	1163.58225	0.40185	0.00015627	0.89316	0.00034732	1.295	0.00050359	388.8682786331986	42.76	1.0152	42.76	42.233	43.249	0					31	19	2	0	0	0	0.93005	1	14911	14911		6.6235	1.2207	1	2495600	+		12352	22219	8894	8965	12034	12034					0.007005029181982536
ERFTVPESIS	10	Unmodified	_ERFTVPESIS_					0	0	0			REV__ENSG00000196663|ENST00000359520|TECPR2	REV__ENSG00000196663|ENST00000359520|TECPR2	MULTI-MATCH	A375_MHC_IP_R2	2		3	388.868027	1163.58225	-0.12964	-5.0412E-05	1.2054	0.00046874	1.0758	0.00041833	389.2029518343815	42.03	1.0212	42.805	42.198	43.22	0.77451	0.022248	0.00016951	NaN	6.6235	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2698300	+		12353	22219	8894	8965							0.007005029181982536
ERGESFDNFM	10	Unmodified	_ERGESFDNFM_					0	0	0			REV__GATA4|p.D210N|1|0.2|ENSG00000136574|chr8:11748930-11748930|G/A|missense_variant	REV__GATA4|p.D210N|1|0.2|ENSG00000136574|chr8:11748930-11748930|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	411.5715026855469	3	411.173122	1230.49754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.562	1	19.165	18.665	19.665	0.60308								0	0	0	0.15629	1	5528	5528		0.13989	0	1		+		12354	26666	8895	8966	12035	12035					-0.10849190890098726
ERGKKKRIF	9	Unmodified	_ERGKKKRIF_					0	0	0		ZNF474|p.S10F|1|0.34|ENSG00000164185|chr5:122152019-122152019|C/T|missense_variant	ZNF474|p.S10F|1|0.34|ENSG00000164185|chr5:122152019-122152019|C/T|missense_variant	ZNF474|p.S10F|1|0.34|ENSG00000164185|chr5:122152019-122152019|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	581.4611206054688	2	581.364382	1160.71421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.71	1	108.47	107.97	108.97	0.75436								0	0	0	0.15486	1	40686	40686		7.9102	2.6133	1				12355	30221	8896	8967	12036	12036					0.14028197516449836
ERGRSLFTWK	10	Unmodified	_ERGRSLFTWK_					0	0	0			REV__ENSG00000132692|ENST00000329117|BCAN	REV__ENSG00000132692|ENST00000329117|BCAN	MULTI-MSMS	A375_MHC_IP_R1	1	427.2860412597656	3	427.235045	1278.6833	0.37504	0.00016023	-0.98319	-0.00042005	-0.60814	-0.00025982	427.5690723249274	49.089	0.55542	49.089	48.78	49.336	0					17	10	2	0	0	0	0.70565	1	17363	17363		9.7643	1.0125	1	1261500	+		12356	18671	8897	8968	12037	12037					0.055109994115582595
ERGTGAASAF	10	Unmodified	_ERGTGAASAF_					0	0	0			REV__nc|ENSG00000110536|Q8WUK0-3|PTPMT1	REV__nc|ENSG00000110536|Q8WUK0-3|PTPMT1	MSMS	A375_MHC_IP_R1	1	483.65826416015625	2	483.735606	965.456658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.382	1	65.382	64.882	65.882	0								0	0	0	0.15332	1	23670	23670		10.074	1.4806	1		+		12357	27170	8898	8969	12038	12038					-0.02745164147381729
ERIARLEEKVK	11	Unmodified	_ERIARLEEKVK_					0	0	0		ENSG00000177606|ENST00000371222|JUN	ENSG00000177606|ENST00000371222|JUN	ENSG00000177606|ENST00000371222|JUN	MULTI-MSMS	A375_MHC_IP_R1	1	686.3082885742188	2	685.90935	1369.80415	-0.85574	-0.00058696	-0.60401	-0.0004143	-1.4598	-0.0010013	685.9088168385904	131.5	1.1137	131.5	130.82	131.93	0					92	21	5	0	0	0	0.73807	1	50700	50700		1.1933	1.1933	1	151040000			12358	8094	8899	8970	12039	12039					0.13403782334330572
ERIEDFMSSNW	11	Unmodified	_ERIEDFMSSNW_					0	0	0			REV__nc|ENSG00000149305|O95264-2|HTR3B	REV__nc|ENSG00000149305|O95264-2|HTR3B	MULTI-MSMS	A375_MHC_IP_R1	1	472.2745056152344	3	471.874965	1412.60306	-0.072776	-3.4341E-05	0.091787	4.3312E-05	0.019011	8.9708E-06	471.87481798072065	22.1	0.65986	22.1	21.86	22.52	0					25	12	4	0	0	0	0.73672	1	5914	5914		1.0136	0	1	5387600	+		12359	19674	8900	8971	12040	12040					-0.08673274764441885
ERIIEYLVPER	11	Unmodified	_ERIIEYLVPER_					0	0	0		nc|ENSG00000160282|O95954-2|FTCD;nc|ENSG00000160282|O95954-3|FTCD;ENSG00000160282|ENST00000397746|FTCD	nc|ENSG00000160282|O95954-2|FTCD	nc|ENSG00000160282|O95954-2|FTCD	MSMS	A375_MHC_IP_R2	2	708.8215942382812	2	708.895909	1415.77726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.83	1	121.27	120.77	121.77	0.44488								0	0	0	0.16152	1	46152	46152		10.8	5.5026	1				12360	14710	8901	8972	12041	12041					0.08600673723140062
ERIKQVFEK	9	Unmodified	_ERIKQVFEK_					0	0	0		TMCC3|p.G109E|1|0.66|ENSG00000057704|chr12:94582291-94582291|C/T|missense_variant	TMCC3|p.G109E|1|0.66|ENSG00000057704|chr12:94582291-94582291|C/T|missense_variant	TMCC3|p.G109E|1|0.66|ENSG00000057704|chr12:94582291-94582291|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	392.9556579589844	3	392.896029	1175.66626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.744	1	39.519	39.019	40.019	0.77451								0	0	0	0.15486	1	14279	14279		8.4443	1.8139	1				12361	29358	8902	8973	12042	12042					0.08545078805741468
ERIRRRWNLFR	11	Unmodified	_ERIRRRWNLFR_					0	0	0			REV__ENST00000550564.1_1_12:53468877-53473168:-|nuORF	REV__ENST00000550564.1_1_12:53468877-53473168:-|nuORF	MSMS	A375_MHC_IP_R1	1	801.4677734375	2	801.466024	1600.9175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.798	1	76.798	76.298	77.298	0								0	0	0	0.16358	1	28001	28001		0	0	1		+		12362	20794	8903	8974	12043	12043					0.14107315290789302
ERKKFQEI	8	Unmodified	_ERKKFQEI_					0	0	0		ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	MULTI-MSMS	A375_MHC_IP_R1	1	359.8827819824219	3	359.873224	1076.59784	0.14757	5.3108E-05	-0.29013	-0.00010441	-0.14256	-5.1303E-05	359.8730138402145	44.017	0.56078	44.017	43.706	44.267	0					19	10	3	0	0	0	0.76654	1	15341	15341		15.847	0.5987	1	3162600			12363	8004	8904	8975	12044	12044					0.06260834225895451
ERKKFQEI	8	Unmodified	_ERKKFQEI_					0	0	0		ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	MULTI-MSMS	A375_MHC_IP_R2	2	359.88287353515625	3	359.873224	1076.59784	-0.10129	-3.6452E-05	-0.46677	-0.00016798	-0.56806	-0.00020443	359.8730706486764	43.058	0.50636	43.831	43.573	44.079	0.7724					19	9	3	0	0	0	0.75389	1	16023	16023		19.257	0	1	3165000			12364	8004	8904	8975	12045	12045					0.06260834225895451
ERKKFQEI	8	Unmodified	_ERKKFQEI_					0	0	0		ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	359.873224	1076.59784	-0.10129	-3.6452E-05	-0.46677	-0.00016798	-0.56806	-0.00020443	359.8730706486764	43.058	0.50636	43.831	43.573	44.079	0.7724	-0.093281	-0.0001159	NaN	19.257	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3165000			12365	8004	8904	8975							0.06260834225895451
ERKKRNICYDP	11	Unmodified	_ERKKRNICYDP_					0	0	0		ENSG00000176979|ENST00000512596|TRIM60	ENSG00000176979|ENST00000512596|TRIM60	ENSG00000176979|ENST00000512596|TRIM60	MSMS	A375_MHC_IP_R2	2	474.6400146484375	3	474.582116	1420.72452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.741	1	21.351	20.851	21.851	0.61029								0	0	0	0.16124	1	6481	6481		6.6235	0.3891	1				12366	8049	8905	8976	12046	12046					0.03098392388733373
ERKLEKEGRLL	11	Unmodified	_ERKLEKEGRLL_					0	0	0			REV__ENSG00000090339|ENST00000264832|ICAM1	REV__ENSG00000090339|ENST00000264832|ICAM1	MULTI-MSMS	A375_MHC_IP_R1	1	458.0078125	3	457.608659	1369.80415	-0.48922	-0.00022387	-0.59521	-0.00027237	-1.0844	-0.00049624	457.60830094972243	132.4	2.489	132.4	131.83	134.32	0					165	48	5	0	0	0	0.73886	1	51621	51621		0.45452	0.046251	1	169830000	+		12367	16924	8906	8977	12047	12047					0.13403782334376046
ERKQDFSAFK	10	Unmodified	_ERKQDFSAFK_					0	0	0		nc|ENSG00000148842|Q9H8M5-2|CNNM2;ENSG00000148842|ENST00000369878|CNNM2	nc|ENSG00000148842|Q9H8M5-2|CNNM2	nc|ENSG00000148842|Q9H8M5-2|CNNM2	MULTI-SECPEP	A375_MHC_IP_R1	1	419.2954406738281	3	419.219172	1254.63569	0.031251	1.3101E-05	-0.011639	-4.8794E-06	0.019611	8.2215E-06	419.21913572316623	40.076	1.5218	40.076	39.744	41.266	0					59	29	5	0	0	0	0.91516	1	14128	14128		9.7643	9.7643	1	110540000			12368	5770	8907	8978	12048	12048					0.018553004206978585
ERKRKRWLYWQ	11	Unmodified	_ERKRKRWLYWQ_					0	0	0		ENSG00000175354|ENST00000309660|PTPN2	ENSG00000175354|ENST00000309660|PTPN2	ENSG00000175354|ENST00000309660|PTPN2	MSMS	A375_MHC_IP_R2	2	824.9594116210938	2	824.962783	1647.91101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.322	1	84.062	83.562	84.562	0.73962								0	0	0	0.16334	1	31669	31669		1.3295	1.3295	1				12369	7954	8908	8979	12049	12049					0.11297377339428749
ERLEKFVRK	9	Unmodified	_ERLEKFVRK_					0	0	0			REV__ENST00000233336.6_1_2:113260611-113260653:+|nuORF	REV__ENST00000233336.6_1_2:113260611-113260653:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	402.14251708984375	3	402.24354	1203.70879	-0.0583	-2.3451E-05	1.1134	0.00044785	1.0551	0.0004244	402.2441003281718	44.6	0.60904	45.369	44.934	45.543	0.7691					14	11	2	0	0	0	0.78353	1	16597	16597		9.544	6.4717	1	6284700	+		12370	23076	8909	8980	12050	12050					0.11508473933986352
ERLGKRKFSA	10	Unmodified	_ERLGKRKFSA_					0	0	0		ZC3H11A|p.K414Nfs*21|1|0.14|ENSG00000058673|chr1:203847376-203847376|A/-|frameshift_variant;ENSG00000058673|ENST00000367210|ZC3H11A	ZC3H11A|p.K414Nfs*21|1|0.14|ENSG00000058673|chr1:203847376-203847376|A/-|frameshift_variant	ZC3H11A|p.K414Nfs*21|1|0.14|ENSG00000058673|chr1:203847376-203847376|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	398.620361328125	3	397.903406	1190.68839	-0.46457	-0.00018485	-0.77821	-0.00030965	-1.2428	-0.00049451	397.90254150167044	26.527	0.30503	27.187	27.058	27.363	0.65992					6	5	2	0	0	0	0.93005	1	8918	8918		6.6235	1.2207	1	705280			12371	1296	8910	8981	12051	12051					0.10067303274172446
ERLGPAEQSL	10	Unmodified	_ERLGPAEQSL_					0	0	0			REV__nc|ENSG00000241839|Q8TD55-2|PLEKHO2	REV__nc|ENSG00000241839|Q8TD55-2|PLEKHO2	MULTI-MSMS	A375_MHC_IP_R2	2	366.9378967285156	3	367.196256	1098.56694	0.22359	8.2103E-05	0.24292	8.92E-05	0.46652	0.0001713	367.19625548695046	42.836	1.115	43.608	43.218	44.333	0.7724					38	21	3	0	0	0	0.70682	1	15797	15797		9.2438	3.4603	1	32570000	+		12372	22792	8911	8982	12052	12052					0.02159636120995856
ERLLHAVNTFL	11	Unmodified	_ERLLHAVNTFL_					0	0	0		nc|ENSG00000273749|Q7L576-2|CYFIP1	nc|ENSG00000273749|Q7L576-2|CYFIP1	nc|ENSG00000273749|Q7L576-2|CYFIP1	MULTI-MSMS	A375_MHC_IP_R2	2	438.3152160644531	3	438.250583	1311.72992	-0.64883	-0.00028435	-1.6464	-0.00072156	-2.2953	-0.0010059	438.24972946801984	37.463	0.61249	38.234	38.02	38.632	0.7709					14	11	2	0	0	0	0.73016	1	13778	13778		8.7518	0.80638	1	1720100			12373	14937	8912	8983	12053	12053					0.08652439242837318
ERLLVRTHI	9	Unmodified	_ERLLVRTHI_					0	0	0		ENST00000416749.1_3_6:27326520-27327366:-|nuORF	ENST00000416749.1_3_6:27326520-27327366:-|nuORF	ENST00000416749.1_3_6:27326520-27327366:-|nuORF	MSMS	A375_MHC_IP_R2	2	379.6241149902344	3	379.568135	1135.68258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.37	1	28.049	27.549	28.549	0.67857								0	0	0	0.15486	1	9343	9343		13.615	6.5131	1				12374	11696	8913	8984	12054	12054					0.12016204762517191
ERLNKVVVR	9	Unmodified	_ERLNKVVVR_					0	0	0			REV__tr|U7SV17|U7SV17_FUSNUFAD-dependentproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01092PE=4SV=1	REV__tr|U7SV17|U7SV17_FUSNUFAD-dependentproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01092PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	371.96905517578125	3	371.568135	1111.68258	0.043149	1.6033E-05	0.58223	0.00021634	0.62538	0.00023237	371.9022367781859	24.699	0.71218	25.343	25.212	25.924	0.64368					18	13	2	0	0	0	0.73141	1	8245	8245		4.1895	2.7344	1	8678100	+		12375	28577	8914	8985	12055	12055					0.13120204762503818
ERLPQVLVSS	10	Unmodified	_ERLPQVLVSS_					0	0	0			REV__nc|ENSG00000161813|Q71RC2-2|LARP4	REV__nc|ENSG00000161813|Q71RC2-2|LARP4	MULTI-SECPEP	A375_MHC_IP_R1	1	565.0758056640625	2	564.324588	1126.63462	-0.77275	-0.00043608	0.36459	0.00020575	-0.40816	-0.00023034	564.3246992122191	141.51	1.3855	141.51	140.49	141.88	0					45	26	2	0	0	0	0.94516	1	54290	54290		1.4819	0.28856	1	1057600	+		12376	20219	8915	8986	12056	12056					0.0763708605179545
ERLRNHERIRL	11	Unmodified	_ERLRNHERIRL_					0	0	0		nc|ENSG00000165861|Q9HBF4-3|ZFYVE1;ENSG00000165861|ENST00000556143|ZFYVE1	nc|ENSG00000165861|Q9HBF4-3|ZFYVE1	nc|ENSG00000165861|Q9HBF4-3|ZFYVE1	MULTI-MSMS	A375_MHC_IP_R2	2	746.834228515625	2	746.43439	1490.85423	-0.67008	-0.00050017	0.41278	0.00030811	-0.2573	-0.00019206	746.4345566956615	149.12	2.1079	149.14	147.66	149.77	0.018692					174	71	4	0	0	0	0.73902	1	57804	57804		0.30703	0	1	765770			12377	6995	8916	8987	12057	12057					0.1284332978286784
ERLTILPNESI	11	Unmodified	_ERLTILPNESI_					0	0	0			REV__nc|ENSG00000008277|Q9P0K1-4|ADAM22	REV__nc|ENSG00000008277|Q9P0K1-4|ADAM22	MULTI-SECPEP	A375_MHC_IP_R1	1	429.2914123535156	3	428.910115	1283.70852	-0.047582	-2.0408E-05	-1.0111	-0.00043366	-1.0587	-0.00045407	429.2440698878175	55.954	0.50597	55.954	55.841	56.347	0					15	9	3	0	0	0	0.98336	1	20114	20114		19.144	2.8694	1	1473900	+		12378	16169	8917	8988	12058	12058					0.0780100942347417
ERLVQQVSF	9	Unmodified	_ERLVQQVSF_					0	0	0		ENST00000285689.7_2_5:125758923-125759271:+|nuORF	ENST00000285689.7_2_5:125758923-125759271:+|nuORF	ENST00000285689.7_2_5:125758923-125759271:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	552.6972045898438	2	553.303655	1104.59276	-0.45025	-0.00024912	-0.0083327	-4.6105E-06	-0.45858	-0.00025373	553.3036246927305	70.993	0.71681	70.993	70.698	71.415	0					22	13	2	0	0	0	0.61998	1	25840	25840		13.906	0.86358	1	5725700			12379	10447	8918	8989	12059	12059					0.04464530363270569
ERLVRLGPG	9	Unmodified	_ERLVRLGPG_					0	0	0		ENST00000322177.5_1_15:75249143-75249248:-|nuORF	ENST00000322177.5_1_15:75249143-75249248:-|nuORF	ENST00000322177.5_1_15:75249143-75249248:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	498.9679870605469	2	498.801083	995.587613	-0.8137	-0.00040587	0.53452	0.00026662	-0.27918	-0.00013926	498.80128377872586	24.238	0.2026	24.882	24.755	24.958	0.64368					5	3	2	0	0	0	0.80516	1	7884	7884		1.6526	0	1	1920500			12380	10702	8919	8990	12060	12060					0.0896427129133599
ERLYVEWDTEP	11	Unmodified	_ERLYVEWDTEP_					0	0	0			REV__nc|ENSG00000133119|P40938-2|RFC3	REV__nc|ENSG00000133119|P40938-2|RFC3	MULTI-MSMS	A375_MHC_IP_R1	1	719.7391357421875	2	718.838256	1435.66196	-0.56061	-0.00040299	-0.26367	-0.00018954	-0.82428	-0.00059252	718.8381222144786	36.09	0.50897	36.09	35.778	36.287	0					18	9	3	0	0	0	0.73078	1	12068	12068		8.1555	1.0538	1	4884000	+		12381	18708	8920	8991	12061	12061					-0.038444751985025505
ERNFLGIFESV	11	Unmodified	_ERNFLGIFESV_					0	0	0			REV__ENSG00000198932|ENST00000537097|GPRASP1	REV__ENSG00000198932|ENST00000537097|GPRASP1	MSMS	A375_MHC_IP_R2	2	655.754638671875	2	655.840602	1309.66665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.38	1	116.07	115.57	116.57	0.68999								0	0	0	0.16213	1	43490	43490		7.609	0	1		+		12382	22451	8921	8992	12062	12062					0.02420453734930561
ERPYFVEKR	9	Unmodified	_ERPYFVEKR_					0	0	0			REV__ENSG00000266714|ENST00000645453|MYO15B	REV__ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	A375_MHC_IP_R1	1	408.59967041015625	3	408.555895	1222.64586	-0.4572	-0.00018679	0.030953	1.2646E-05	-0.42625	-0.00017415	408.8904407319707	26.601	0.20296	26.601	26.474	26.677	0					5	3	2	0	0	0	0.71358	1	7959	7959		5.7834	0	1	1474400	+		12383	22927	8922	8993	12063	12063					0.04343908145938258
ERQQQQWNVI	10	Unmodified	_ERQQQQWNVI_					0	0	0			REV__ENSG00000179271|ENST00000316939|GADD45GIP1	REV__ENSG00000179271|ENST00000316939|GADD45GIP1	MULTI-MSMS	A375_MHC_IP_R1	1	665.23779296875	2	664.838925	1327.6633	-0.58758	-0.00039065	-1.4957	-0.00099443	-2.0833	-0.0013851	664.8374076363368	58.074	0.55731	58.074	57.873	58.43	0					21	10	3	0	0	0	0.33265	1	20836	20836		38.176	1.6694	1	7056100	+		12384	21551	8923	8994	12064	12064					0.01257203680938801
ERQQQQWNVI	10	Unmodified	_ERQQQQWNVI_					0	0	0			REV__ENSG00000179271|ENST00000316939|GADD45GIP1	REV__ENSG00000179271|ENST00000316939|GADD45GIP1	MULTI-SECPEP	A375_MHC_IP_R2	2	665.2369995117188	2	664.838925	1327.6633	-1.1873	-0.00078936	-1.3247	-0.0008807	-2.512	-0.0016701	664.837795439161	57.341	0.61179	58.09	57.865	58.477	0.74894					23	11	3	0	0	0	0.79457	1	21767	21767		15.248	5.0979	1	8514000	+		12385	21551	8923	8994	12065	12065					0.01257203680938801
ERQQQQWNVI	10	Unmodified	_ERQQQQWNVI_					0	0	0			REV__ENSG00000179271|ENST00000316939|GADD45GIP1	REV__ENSG00000179271|ENST00000316939|GADD45GIP1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	664.838925	1327.6633	-0.58758	-0.00039065	-1.4957	-0.00099443	-2.0833	-0.0013851	664.8374076363368	58.074	0.55731	58.074	57.873	58.43	0	-0.0080946	-0.00011918	NaN	38.176	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7056100	+		12386	21551	8923	8994							0.01257203680938801
ERQRLVELPVE	11	Unmodified	_ERQRLVELPVE_					0	0	0			REV__ENST00000490449.1_2_22:30696623-30722870:-|nuORF	REV__ENST00000490449.1_2_22:30696623-30722870:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	684.7850952148438	2	684.385708	1366.75686	-0.58556	-0.00040075	-0.59037	-0.00040404	-1.1759	-0.00080479	684.3851063696455	133.17	1.881	133.33	132.84	134.72	0.16487					67	36	4	0	0	0	0.73795	1	52355	52355		1.3295	0.13619	1	11258000	+		12387	17039	8924	8995	12066	12066					0.08815503063397045
ERQRYRRLLQR	11	Unmodified	_ERQRYRRLLQR_					0	0	0			REV__ENSG00000261150|ENST00000615648|EPPK1	REV__ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	A375_MHC_IP_R1	1	787.8601684570312	2	787.460939	1572.90732	-0.72371	-0.00056989	0.1234	9.7172E-05	-0.60031	-0.00047272	787.4608482984466	134.91	2.3986	134.91	134.52	136.92	0					139	46	5	0	0	0	0.73924	1	51984	51984		0	0	1	80268000	+		12388	22909	8925	8996	12067	12067					0.14378707565538207
ERQVWKQTL	9	Unmodified	_ERQVWKQTL_					0	0	0			REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-MSMS	A375_MHC_IP_R2	2	397.61566162109375	3	396.555895	1186.64586	-0.12826	-5.0864E-05	-0.019665	-7.7983E-06	-0.14793	-5.8662E-05	396.5559075509118	31.777	0.71054	32.514	32.249	32.96	0.73691					33	13	4	0	0	0	0.62591	1	11241	11241		13.615	13.615	1	18050000	+		12389	20185	8926	8997	12068	12068					0.05999908145963673
ERREHNRLKRY	11	Unmodified	_ERREHNRLKRY_					0	0	0			REV__BMP5|p.R42K|1|0.27|ENSG00000112175|chr6:55874741-55874741|C/T|missense_variant	REV__BMP5|p.R42K|1|0.27|ENSG00000112175|chr6:55874741-55874741|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	519.6607666015625	3	519.622073	1555.84439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.482	1	34.482	33.982	34.982	0								0	0	0	0.16336	1	11371	11371		1.2148	0.70888	1		+		12390	15516	8927	8998	12069	12069					0.0887014177749279
ERRGGPVV	8	Unmodified	_ERRGGPVV_					0	0	0			REV__ENST00000446001.1_1_6:13486575-13486937:+|nuORF	REV__ENST00000446001.1_1_6:13486575-13486937:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	435.651123046875	2	435.251226	868.487899	-0.041176	-1.7922E-05	0.2438	0.00010612	0.20263	8.8194E-05	435.2512280958006	104.22	6.8161	104.22	102.61	109.42	0					311	133	3	0	0	0	0.7773	3	39652	38650;39453;39652		4.756	0	1	16984000	+		12391	24850	8928	8999	12070;12071;12072	12072					0.04839453677391248
ERRGGPVV	8	Unmodified	_ERRGGPVV_					0	0	0			REV__ENST00000446001.1_1_6:13486575-13486937:+|nuORF	REV__ENST00000446001.1_1_6:13486575-13486937:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	435.6508483886719	2	435.251226	868.487899	-0.3118	-0.00013571	0.0015902	6.9213E-07	-0.31021	-0.00013502	435.2511447455881	106.59	3.868	107.35	106.63	110.5	0.75977					134	75	2	0	0	0	0.77839	1	40383	40383		0.79363	0	1	14524000	+		12392	24850	8928	8999	12073	12073					0.04839453677391248
ERRKTEFELAE	11	Unmodified	_ERRKTEFELAE_					0	0	0			REV__nc|ENSG00000276644|Q9UI36-4|DACH1	REV__nc|ENSG00000276644|Q9UI36-4|DACH1	MSMS	A375_MHC_IP_R2	2	704.3985595703125	2	704.364973	1406.71539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.269	1	81.014	80.514	81.514	0.74474								0	0	0	0.16152	1	30472	30472		10.8	1.4164	1		+		12393	22969	8929	9000	12074	12074					0.028303223040666126
ERRLPFLF	8	Unmodified	_ERRLPFLF_					0	0	0		ENST00000404404.5_1_7:5037114-5037204:+|nuORF	ENST00000404404.5_1_7:5037114-5037204:+|nuORF	ENST00000404404.5_1_7:5037114-5037204:+|nuORF	MSMS	A375_MHC_IP_R1	1	359.9342956542969	3	359.87831	1076.6131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.864	1	22.864	22.364	23.364	0								0	0	0	0.16876	1	6184	6184		9.3831	1.2276	1				12394	11583	8930	9001	12075	12075					0.0778574581374869
ERRLWPRYLLL	11	Unmodified	_ERRLWPRYLLL_					0	0	0		ENST00000458005.2_1_17:9738090-9769219:+|nuORF;GLP2R|p.K363Nfs*52|1|0.22|ENSG00000065325|chr17:9870779-9870803|GCTTCTCATTTCTAAGCTCAAAGCT/-|frameshift_variant;ENSG00000065325|ENST00000262441|GLP2R	ENST00000458005.2_1_17:9738090-9769219:+|nuORF	ENST00000458005.2_1_17:9738090-9769219:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	505.7360534667969	3	505.636661	1513.88815	-0.51958	-0.00026272	0.72509	0.00036663	0.20552	0.00010392	505.63701433807734	137.9	0.65755	137.98	137.66	138.32	0.083969					16	12	2	0	0	0	0.73881	1	54042	54042		0.50596	0.41111	1	701820			12395	1376	8931	9002	12076	12076					0.1517635822194734
ERRQRRRQEKE	11	Unmodified	_ERRQRRRQEKE_					0	0	0			REV__ENSG00000159450|ENST00000614923|TCHH	REV__ENSG00000159450|ENST00000614923|TCHH	MULTI-MSMS	A375_MHC_IP_R1	1	524.6932983398438	3	524.292616	1569.85602	-0.48211	-0.00025277	1.298	0.00068055	0.81592	0.00042778	524.2931331249239	75.296	0.40374	75.296	75.11	75.514	0					16	7	3	0	0	0	0.73732	1	27455	27455		1.9275	1.473	1	3007400	+		12396	20121	8932	9003	12077	12077					0.09388338800795282
ERRRLKRMEYF	11	Unmodified	_ERRRLKRMEYF_					0	0	0			REV__nc|ENSG00000115137|Q9NZQ0-2|DNAJC27	REV__nc|ENSG00000115137|Q9NZQ0-2|DNAJC27	MSMS	A375_MHC_IP_R2	2	528.6609497070312	3	528.624426	1582.85145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.607	1	75.345	74.845	75.845	0.73752								0	0	0	0.16336	1	28318	28318		1.2148	0.76031	1		+		12397	27185	8933	9004	12078	12078					0.08333738333726615
ERRRQEREERL	11	Unmodified	_ERRRQEREERL_					0	0	0		nc|ENSG00000134775|Q2V2M9-2|FHOD3;nc|ENSG00000134775|Q2V2M9|FHOD3;nc|ENSG00000134775|Q2V2M9-3|FHOD3;ENSG00000134775|ENST00000590592|FHOD3;ENST00000589114.5_1_18:33877702-34289359:+|nuORF	nc|ENSG00000134775|Q2V2M9-2|FHOD3	nc|ENSG00000134775|Q2V2M9-2|FHOD3	MSMS	A375_MHC_IP_R1	1	519.6715698242188	3	519.616988	1555.82913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.428	1	77.428	76.928	77.928	0								0	0	0	0.16332	1	28245	28245		1.4551	0.12547	1				12398	4607	8934	9005	12079	12079					0.07345230189639551
ERRRRGRFLTR	11	Unmodified	_ERRRRGRFLTR_					0	0	0			REV__nc|ENSG00000161813|Q71RC2-2|LARP4	REV__nc|ENSG00000161813|Q71RC2-2|LARP4	MULTI-MSMS	A375_MHC_IP_R1	1	752.3478393554688	2	751.947998	1501.88144	-0.76686	-0.00057664	0.29628	0.00022279	-0.47058	-0.00035385	751.9480661483369	133.18	1.2753	133.18	132.33	133.61	0					84	24	5	0	0	0	0.73924	1	51460	51460		0	0	1	54301000	+		12399	20219	8935	9006	12080	12080					0.15057858113914335
ERRRRRKRRRE	11	Unmodified	_ERRRRRKRRRE_					0	0	0			REV__ENST00000549136.1_1_12:95869939-95877074:+|nuORF	REV__ENST00000549136.1_1_12:95869939-95877074:+|nuORF	MSMS	A375_MHC_IP_R1	1	551.927978515625	3	552.007144	1652.9996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.308	1	85.308	84.808	85.808	0								0	0	0	0.1636	1	31262	31262		0	0	1		+		12400	26024	8936	9007	12081	12081					0.1992223042243495
ERRRRRRHRRR	11	Unmodified	_ERRRRRRHRRR_					0	0	0			REV__ENST00000419807.5_3_2:44395715-44396385:+|nuORF	REV__ENST00000419807.5_3_2:44395715-44396385:+|nuORF	MSMS	A375_MHC_IP_R2	2	845.6493530273438	2	845.518311	1689.02207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.36	1	127.62	127.12	128.12	0.26593								0	0	0	0.1636	1	49944	49944		0	0	1		+		12401	24567	8937	9008	12082	12082					0.20511874610701852
ERRRRRRRPRK	11	Unmodified	_ERRRRRRRPRK_					0	0	0			REV__ENST00000367590.8_1_1:180601192-180601402:+|nuORF	REV__ENST00000367590.8_1_1:180601192-180601402:+|nuORF	MSMS	A375_MHC_IP_R2	2	811.5372924804688	2	811.512163	1621.00977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.52	1	124.85	124.35	125.35	0.32969								0	0	0	0.1636	1	48188	48188		0	0	1		+		12402	23975	8938	9009	12083	12083					0.22410838147652612
ERRRRRRRRRP	11	Unmodified	_ERRRRRRRRRP_					0	0	0			REV__ENST00000372324.5_1_1:44444922-44446927:+|nuORF	REV__ENST00000372324.5_1_1:44444922-44446927:+|nuORF	MSMS	A375_MHC_IP_R1	1	825.6025390625	2	825.515237	1649.01592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.671	1	91.671	91.171	92.171	0								0	0	0	0.1636	1	33682	33682		0	0	1		+		12403	24061	8939	9010	12084	12084					0.21737356379185258
ERRRTRLWNKH	11	Unmodified	_ERRRTRLWNKH_					0	0	0			REV__nc|ENSG00000164520|Q8TD07-6|RAET1E	REV__nc|ENSG00000164520|Q8TD07-6|RAET1E	MSMS	A375_MHC_IP_R1	1	776.4385986328125	2	776.440006	1550.86546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.432	1	95.432	94.932	95.932	0								0	0	0	0.16334	1	35076	35076		1.3295	0.13619	1		+		12404	27325	8940	9011	12085	12085					0.11206151877013326
ERRSRLVVL	9	Unmodified	_ERRSRLVVL_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MSMS	A375_MHC_IP_R2	2	376.5739440917969	3	376.571768	1126.69348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.119	1	19.722	19.222	20.222	0.60308								0	0	0	0.15486	1	5836	5836		2.086	0	1				12405	2701	8941	9012	12086	12086					0.13519607136800005
ERSDLIKHY	9	Unmodified	_ERSDLIKHY_					0	0	0		ENSG00000125945|ENST00000314011|ZNF436	ENSG00000125945|ENST00000314011|ZNF436	ENSG00000125945|ENST00000314011|ZNF436	MULTI-MSMS	A375_MHC_IP_R1	1	388.57568359375	3	387.540134	1159.59857	0.46276	0.00017934	-0.62941	-0.00024392	-0.16665	-6.4585E-05	387.539968296127	21.415	0.50744	21.415	21.098	21.606	0					29	9	4	0	0	0	0.67152	1	5652	5652		9.544	1.0997	1	9500100			12406	4010	8942	9013	12087	12087					0.02515628874948561
ERSDLIKHY	9	Unmodified	_ERSDLIKHY_					0	0	0		ENSG00000125945|ENST00000314011|ZNF436	ENSG00000125945|ENST00000314011|ZNF436	ENSG00000125945|ENST00000314011|ZNF436	MULTI-MSMS	A375_MHC_IP_R2	2	387.9316711425781	3	387.540134	1159.59857	-0.44853	-0.00017382	0.22293	8.6392E-05	-0.2256	-8.743E-05	387.5401696396717	19.748	0.65808	20.358	19.942	20.6	0.61029					27	12	3	0	0	0	0.48411	1	6156	6156		20.581	9.0862	1	3929100			12407	4010	8942	9013	12088	12088					0.02515628874948561
ERSGNFVQY	9	Unmodified	_ERSGNFVQY_					0	0	0			REV__ENSG00000183760|ENST00000331256|ACP7	REV__ENSG00000183760|ENST00000331256|ACP7	MULTI-MSMS	A375_MHC_IP_R2	2	550.6907348632812	2	550.261988	1098.50942	-0.69987	-0.00038511	-0.053434	-2.9402E-05	-0.7533	-0.00041451	550.261864264271	42.93	0.50476	43.703	43.472	43.977	0.7724					18	9	3	0	0	0	0.6656	1	16026	16026		10.074	0.6908	1	3459000	+		12408	21776	8943	9014	12089	12089					-0.035892060845753804
ERSLRRRRWFW	11	Unmodified	_ERSLRRRRWFW_					0	0	0		ENST00000533297.1_1_11:111896132-111933256:+|nuORF	ENST00000533297.1_1_11:111896132-111933256:+|nuORF	ENST00000533297.1_1_11:111896132-111933256:+|nuORF	MSMS	A375_MHC_IP_R1	1	824.609130859375	2	824.458199	1646.90185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.2	1	107.2	106.7	107.7	0								0	0	0	0.16354	1	39339	39339		0.30703	0	1				12409	13195	8944	9015	12090	12090					0.10427028773733582
ERSRKHRPR	9	Unmodified	_ERSRKHRPR_					0	0	0		ENSG00000178395|ENST00000366875|CCDC185	ENSG00000178395|ENST00000366875|CCDC185	ENSG00000178395|ENST00000366875|CCDC185	MULTI-MSMS	A375_MHC_IP_R2	2	408.30657958984375	3	407.906033	1220.69627	0.18119	7.3908E-05	0.91288	0.00037237	1.0941	0.00044628	407.9063880021572	136.56	0.41368	136.68	136.5	136.92	0.11133					15	7	3	0	0	0	0.75764	1	53670	53670		0.96228	0.96228	1	1860300			12410	8157	8945	9016	12091	12091					0.09474875314299425
ERSSRLRRRRW	11	Unmodified	_ERSSRLRRRRW_					0	0	0		ENST00000599652.5_1_19:49965164-49969478:+|nuORF	ENST00000599652.5_1_19:49965164-49969478:+|nuORF	ENST00000599652.5_1_19:49965164-49969478:+|nuORF	MSMS	A375_MHC_IP_R2	2	519.9856567382812	3	519.969696	1556.88726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.731	1	85.467	84.967	85.967	0.73601								0	0	0	0.16358	1	32210	32210		0.094841	0	1				12411	13861	8946	9017	12092	12092					0.13108956625592327
ERSSYYRGIAD	11	Unmodified	_ERSSYYRGIAD_					0	0	0			REV__nc|ENSG00000121690|Q96QD5-2|DEPDC7	REV__nc|ENSG00000121690|Q96QD5-2|DEPDC7	MULTI-MSMS	A375_MHC_IP_R1	1	439.9456481933594	3	439.545836	1315.61568	-0.16476	-7.2418E-05	0.63353	0.00027847	0.46878	0.00020605	439.5458359490178	34.557	0.60554	34.557	34.154	34.759	0					29	11	4	0	0	0	0.72801	1	11398	11398		5.8681	1.462	1	9366100	+		12412	18169	8947	9018	12093	12093					-0.02950495309892176
ERSSYYRGIAD	11	Unmodified	_ERSSYYRGIAD_					0	0	0			REV__nc|ENSG00000121690|Q96QD5-2|DEPDC7	REV__nc|ENSG00000121690|Q96QD5-2|DEPDC7	MULTI-MSMS	A375_MHC_IP_R2	2	439.9457702636719	3	439.545836	1315.61568	-0.78695	-0.0003459	0.68964	0.00030313	-0.097308	-4.2771E-05	439.5459319329941	33.979	0.60654	34.731	34.247	34.853	0.75225					31	11	4	0	0	0	0.72869	1	12198	12198		5.5233	0.32485	1	7859700	+		12413	18169	8947	9018	12094	12094					-0.02950495309892176
ERSVDFGSTY	10	Unmodified	_ERSVDFGSTY_					0	0	0		nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.S182L|1|0.16|ENSG00000053747|chr18:23748040-23748040|C/T|missense_variant	nc|ENSG00000053747|Q16787-3|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-MSMS	A375_MHC_IP_R2	2	581.7301025390625	2	580.76456	1159.51457	-0.36421	-0.00021152	1.198	0.00069578	0.83384	0.00048426	580.7652202537868	107.48	0.50909	108.24	108	108.51	0.75436					21	9	3	0	0	0	0.69306	1	40580	40580		13.906	0	1	3344700			12414	1250	8948	9019	12095	12095					-0.058809470126107044
ERTFMNLF	8	Unmodified	_ERTFMNLF_					0	0	0			REV__ENSG00000169180|ENST00000304658|XPO6	REV__ENSG00000169180|ENST00000304658|XPO6	MULTI-MSMS	A375_MHC_IP_R2	2	529.3877563476562	2	529.260402	1056.50625	-0.38846	-0.00020559	0.67812	0.0003589	0.28966	0.00015331	529.2606805800398	85.868	0.86346	86.602	86.186	87.05	0.73392					36	16	3	0	0	0	0.72008	1	32714	32714		28.487	3.813	1	12306000	+		12415	20914	8949	9020	12096	12096					-0.019741724629511737
ERTFMNLF	8	Unmodified	_ERTFMNLF_					0	0	0			REV__ENSG00000169180|ENST00000304658|XPO6	REV__ENSG00000169180|ENST00000304658|XPO6	MULTI-SECPEP	A375_MHC_IP_R2	2	529.3877563476562	2	529.260402	1056.50625	-0.38846	-0.00020559	0.67812	0.0003589	0.28966	0.00015331	529.2606805800398	85.868	0.86346	86.602	86.186	87.05	0.73392					36	16	3	0	0	0	0.84748	1	32714	32714		28.487	3.813	1	12306000	+		12416	20914	8949	9020	12097	12097					-0.019741724629511737
ERTKLIKQI	9	Unmodified	_ERTKLIKQI_					0	0	0			REV__ENSG00000132915|ENST00000255266|PDE6A	REV__ENSG00000132915|ENST00000255266|PDE6A	MULTI-MSMS	A375_MHC_IP_R1	1	377.30804443359375	3	376.908157	1127.70264	-0.038577	-1.454E-05	-0.17842	-6.7247E-05	-0.21699	-8.1786E-05	376.90802478335877	29.632	1.8076	29.632	29.201	31.009	0					64	35	2	0	0	0	0.3489	1	9294	9294		27.223	2.3417	1	28686000	+		12417	18691	8950	9021	12098	12098					0.14389955702472434
ERTMTSGSEV	10	Unmodified	_ERTMTSGSEV_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	A375_MHC_IP_R2	2	549.2449340820312	2	548.750595	1095.48664	-0.72028	-0.00039525	-0.963	-0.00052845	-1.6833	-0.0009237	548.7500348498467	42.491	0.50986	43.264	42.962	43.472	0.7724					15	9	2	0	0	0	0.71118	1	15883	15883		7.2892	1.0834	1	1783200	+		12418	22403	8951	9022	12099	12099					-0.05728593264370829
ERVKDQMLAL	10	Unmodified	_ERVKDQMLAL_					0	0	0			REV__nc|ENSG00000145020|P48728-2|AMT	REV__nc|ENSG00000145020|P48728-2|AMT	MSMS	A375_MHC_IP_R1	1	401.6238708496094	3	401.556907	1201.64889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.395	1	29.395	28.895	29.895	0								0	0	0	0.14628	1	9195	9195		24.882	9.9244	1		+		12419	19458	8952	9023	12100	12100					0.05613415208472361
ERVKNDPQEFR	11	Unmodified	_ERVKNDPQEFR_					0	0	0		ZNF438|p.F576Afs*10|1|0.15|ENSG00000183621|chr10:30848676-30848679|CAAA/-|frameshift_variant;nc|ENSG00000183621|Q7Z4V0-3|ZNF438;nc|ENSG00000183621|Q7Z4V0-2|ZNF438;ENSG00000183621|ENST00000436087|ZNF438	ZNF438|p.F576Afs*10|1|0.15|ENSG00000183621|chr10:30848676-30848679|CAAA/-|frameshift_variant	ZNF438|p.F576Afs*10|1|0.15|ENSG00000183621|chr10:30848676-30848679|CAAA/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	709.026611328125	2	709.362764	1416.71098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.48	1	119.08	118.58	119.58	0.60909								0	0	0	0.16125	1	44978	44978		12.175	3.4293	1				12420	8511	8953	9024	12101	12101					0.019288578811028856
ERVLKEFH	8	Unmodified	_ERVLKEFH_					0	0	0		ENST00000480786.1_1_21:45553579-45560342:+|nuORF;ENST00000493883.5_1_21:45553616-45561277:+|nuORF;ENSG00000160221|ENST00000291577|GATD3	ENST00000480786.1_1_21:45553579-45560342:+|nuORF	ENST00000480786.1_1_21:45553579-45560342:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	353.28497314453125	3	353.197819	1056.57163	-0.14634	-5.1688E-05	0.096051	3.3925E-05	-0.050292	-1.7763E-05	353.19777166095815	64.336	0.51025	65.077	64.749	65.259	0.74022					18	9	3	0	0	0	0.81376	1	24454	24454		32.786	6.5175	1	1125900			12421	6407	8954	9025	12102	12102					0.04560565054430299
ERVLKEFH	8	Unmodified	_ERVLKEFH_					0	0	0		ENST00000480786.1_1_21:45553579-45560342:+|nuORF;ENST00000493883.5_1_21:45553616-45561277:+|nuORF;ENSG00000160221|ENST00000291577|GATD3	ENST00000480786.1_1_21:45553579-45560342:+|nuORF	ENST00000480786.1_1_21:45553579-45560342:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	353.197819	1056.57163	-0.18433	-6.5104E-05	0.1227	4.3338E-05	-0.061625	-2.1766E-05	353.1977775702185	65.335	0.45856	65.335	65.055	65.514	0	0.12903	1.8061E-05	NaN	32.786	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1475300			12422	6407	8954	9025							0.04560565054430299
ERWLKKNIVEV	11	Unmodified	_ERWLKKNIVEV_					0	0	0			REV__ENSG00000116017|ENST00000263620|ARID3A	REV__ENSG00000116017|ENST00000263620|ARID3A	MSMS	A375_MHC_IP_R1	1	472.0115966796875	3	471.945271	1412.81398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.34	1	134.34	133.84	134.84	0								0	0	0	0.16313	1	51807	51807		2.4348	0.97967	1		+		12423	17933	8955	9026	12103	12103					0.12408970339720327
ERWVNDPQR	9	Unmodified	_ERWVNDPQR_					0	0	0		ENSG00000143457|ENST00000271732|GOLPH3L;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	ENSG00000143457|ENST00000271732|GOLPH3L	ENSG00000143457|ENST00000271732|GOLPH3L	MULTI-SECPEP	A375_MHC_IP_R1	1	399.7467956542969	3	400.535383	1198.58432	-0.045842	-1.8361E-05	-0.60405	-0.00024195	-0.6499	-0.00026031	400.8695853143452	21.377	0.15305	21.377	21.25	21.403	0					4	2	2	0	0	0	0.77901	1	5599	5599		6.1918	0.46	1	402340			12424	5394	8956	9027	12104	12104					-0.0070302355336480105
ERWVRPVE	8	Unmodified	_ERWVRPVE_					0	0	0		ENSG00000169684|ENST00000299565|CHRNA5	ENSG00000169684|ENST00000299565|CHRNA5	ENSG00000169684|ENST00000299565|CHRNA5	MSMS	A375_MHC_IP_R2	2	357.44891357421875	3	357.529569	1069.56688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.585	1	62.33	61.83	62.83	0.74503								0	0	0	0.16876	1	23341	23341		6.7232	0.09279	1				12425	7430	8957	9028	12105	12105					0.0348768091164402
ERYGNYQTK	9	Unmodified	_ERYGNYQTK_					0	0	0			REV__tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1	REV__tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	580.1798095703125	2	579.780544	1157.54654	-0.51801	-0.00030033	0.080719	4.6799E-05	-0.43729	-0.00025353	579.7804729042091	26.093	0.40632	26.093	25.966	26.373	0					13	7	2	0	0	0	0.74875	1	7755	7755		15.248	5.1746	1	7832500	+		12426	28173	8958	9029	12106	12106					-0.025935345388234055
ERYHALCHKR	10	Unmodified	_ERYHALCHKR_					0	0	0			REV__nc|ENSG00000180190|Q86YL5-2|TDRP	REV__nc|ENSG00000180190|Q86YL5-2|TDRP	MSMS	A375_MHC_IP_R2	2	656.8370361328125	2	656.838205	1311.66186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.848	1	29.546	29.046	30.046	0.69872								0	0	0	0.15601	1	10014	10014		1.3295	0	1		+		12427	27385	8959	9030	12107	12107					0.01849291111147977
ERYKEPEM	8	Unmodified	_ERYKEPEM_					0	0	0			REV__HDC|p.E6K|1|0.3|ENSG00000140287|chr15:50265608-50265608|C/T|missense_variant	REV__HDC|p.E6K|1|0.3|ENSG00000140287|chr15:50265608-50265608|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	541.1874389648438	2	541.252774	1080.491	-0.89851	-0.00048632	-0.72657	-0.00039326	-1.6251	-0.00087958	541.2525281934302	26.806	1.6166	26.806	25.917	27.533	0					63	31	3	0	0	0	0.73111	1	8149	8149		25.399	6.1423	1	3645700	+		12428	26725	8960	9031	12108	12108					-0.0460308405079104
ERYKERYTDP	10	Unmodified	_ERYKERYTDP_					0	0	0			REV__ETNPPL|p.G176E|1|0.34|ENSG00000164089|chr4:108752986-108752986|C/T|missense_variant	REV__ETNPPL|p.G176E|1|0.34|ENSG00000164089|chr4:108752986-108752986|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	453.2894287109375	3	452.889603	1355.64698	-0.58318	-0.00026412	-0.33712	-0.00015268	-0.92031	-0.0004168	452.88942245140225	21.334	0.55896	21.953	21.676	22.234	0.61932					25	10	4	0	0	0	0.58757	1	6714	6714		21.799	3.0782	1	5840500	+		12429	26595	8961	9032	12109	12109					-0.016619222758208707
ERYKLTVGKY	10	Unmodified	_ERYKLTVGKY_					0	0	0		ENSG00000120332|ENST00000239462|TNN	ENSG00000120332|ENST00000239462|TNN	ENSG00000120332|ENST00000239462|TNN	MSMS	A375_MHC_IP_R1	1	419.61785888671875	3	419.571434	1255.69247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.813	1	39.813	39.313	40.313	0								0	0	0	0.15486	1	13641	13641		5.0475	1.4605	1				12430	3660	8962	9033	12110	12110					0.07485347977217316
ERYRQNGEE	9	Unmodified	_ERYRQNGEE_					0	0	0			REV__ENSG00000162222|ENST00000316461|TTC9C	REV__ENSG00000162222|ENST00000316461|TTC9C	MULTI-SECPEP	A375_MHC_IP_R1	1	394.8592224121094	3	394.182898	1179.52686	0.39184	0.00015446	0.39143	0.00015429	0.78327	0.00030875	394.18296644393274	38.933	0.55912	38.933	38.73	39.289	0					17	10	2	0	0	0	0.77901	1	13366	13366		6.1918	2.0752	1	1519500	+		12431	20239	8963	9034	12111	12111					-0.055719105495882104
ESADVCRNIS	10	Unmodified	_ESADVCRNIS_					0	0	0		PLXNC1|p.G1440Tfs*6|1|0.9|ENSG00000136040|chr12:94300986-94300987|-/AC|frameshift_variant;ENSG00000136040|ENST00000258526|PLXNC1;ENST00000549187.1_1_12:94658920-94673460:+|nuORF	PLXNC1|p.G1440Tfs*6|1|0.9|ENSG00000136040|chr12:94300986-94300987|-/AC|frameshift_variant	PLXNC1|p.G1440Tfs*6|1|0.9|ENSG00000136040|chr12:94300986-94300987|-/AC|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	547.6511840820312	2	547.250763	1092.48697	-1.1047	-0.00060455	0.76785	0.00042021	-0.33686	-0.00018435	547.2511706036415	60.204	0.56138	60.95	60.703	61.264	0.74632					16	10	2	0	0	0	0.77698	1	22808	22808		28.495	12.647	1	2459500			12432	4744	8964	9035	12112	12112					-0.055571735445028025
ESAEGVNDY	9	Unmodified	_ESAEGVNDY_					0	0	0			REV__nc|ENSG00000275835|Q96RT8-2|TUBGCP5	REV__nc|ENSG00000275835|Q96RT8-2|TUBGCP5	MSMS	A375_MHC_IP_R2	2	492.1636962890625	2	492.201261	982.38797	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.925	1	64.666	64.166	65.166	0.74022								0	0	0	0.15486	1	24241	24241		7.9102	0	1		+		12433	22964	8965	9036	12113	12113					-0.10392873237765343
ESAENCDKSL	10	Unmodified	_ESAENCDKSL_					0	0	0		nc|ENSG00000163631|P02768-3|ALB;ENSG00000163631|ENST00000295897|ALB;CON__P02768-1	nc|ENSG00000163631|P02768-3|ALB	nc|ENSG00000163631|P02768-3|ALB	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6185302734375	2	548.234778	1094.455	-0.77669	-0.00042581	-2.0935	-0.0011477	-2.8702	-0.0015735	548.2336931333979	73.126	0.61191	73.861	73.48	74.091	0.73541					16	11	2	0	0	0	0.91909	1	27653	27653		9.3831	0.63772	1	1384500		+	12434	585	8966	9037	12114	12114					-0.08844586018312839
ESAESQNYY	9	Unmodified	_ESAESQNYY_					0	0	0			REV__nc|ENSG00000204632|P17693-7|HLA-G	REV__nc|ENSG00000204632|P17693-7|HLA-G	MULTI-MSMS	A375_MHC_IP_R2	2	546.1370239257812	2	545.719818	1089.42508	-1.1457	-0.00062525	-0.1618	-8.8299E-05	-1.3075	-0.00071355	545.7198000490655	59.932	0.60743	60.679	60.349	60.957	0.74714					24	11	3	0	0	0	0.63811	1	22612	22612		12.532	12.532	1	4147200	+		12435	27456	8967	9038	12115	12115					-0.11605201691986622
ESAFEVDGPY	10	Unmodified	_ESAFEVDGPY_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	A375_MHC_IP_R2	2	558.166748046875	2	557.240386	1112.46622	-1.0939	-0.00060957	0.48574	0.00027068	-0.60817	-0.0003389	557.2406425537483	57.493	0.86703	58.242	57.711	58.578	0.74894					33	16	3	0	0	0	0.70329	1	21804	21804		10.824	0.75	1	4315100			12436	4093	8968	9039	12116	12116					-0.0855144065251352
ESAITDILKF	10	Unmodified	_ESAITDILKF_					0	0	0			REV__nc|ENSG00000132669|Q8WYP3-2|RIN2	REV__nc|ENSG00000132669|Q8WYP3-2|RIN2	MULTI-MSMS	A375_MHC_IP_R2	2	379.944580078125	3	379.544773	1135.61249	-0.23505	-8.9212E-05	0.20141	7.6444E-05	-0.03364	-1.2768E-05	379.5447663314637	60.694	1.012	61.439	61.16	62.172	0.74503					34	19	3	0	0	0	0.48529	1	22955	22955		19.626	2.5774	1	19367000	+		12437	18669	8969	9040	12117	12117					0.05010861583377846
ESALTRPSL	9	Unmodified	_ESALTRPSL_					0	0	0		ENSG00000244607|ENST00000310232|CCDC13	ENSG00000244607|ENST00000310232|CCDC13	ENSG00000244607|ENST00000310232|CCDC13	MULTI-SECPEP	A375_MHC_IP_R2	2	487.1048583984375	2	487.269281	972.52401	-0.82893	-0.00040391	-0.61764	-0.00030096	-1.4466	-0.00070487	487.2691131486213	35.455	0.45465	36.219	35.878	36.333	0.76338					10	8	2	0	0	0	0.53748	1	12868	12868		24.021	2.2739	1	1600100			12438	9823	8970	9041	12118	12118					0.03664866063570571
ESANNRAEY	9	Unmodified	_ESANNRAEY_					0	0	0		ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6326293945312	2	527.233427	1052.4523	-1.0161	-0.00053574	0.83948	0.0004426	-0.17665	-9.3137E-05	527.2338399360725	29.686	0.70699	30.385	30.083	30.79	0.69872					24	13	3	0	0	0	0.73363	1	10341	10341		10.824	10.824	1	3264900			12439	2172	8971	9042	12119	12119					-0.07182673360944136
ESAQALYQQ	9	Unmodified	_ESAQALYQQ_					0	0	0			REV__ENSG00000171811|ENST00000368586|CFAP46	REV__ENSG00000171811|ENST00000368586|CFAP46	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1383056640625	2	519.248546	1036.48254	-0.34072	-0.00017692	-0.28078	-0.00014579	-0.6215	-0.00032271	519.248318897895	35.524	0.30655	35.524	35.319	35.625	0					8	5	2	0	0	0	0.62767	1	11754	11754		11.64	1.5664	1	1424100	+		12440	21098	8972	9043	12120	12120					-0.03424314695780595
ESAQPEAEKLE	11	Unmodified	_ESAQPEAEKLE_					0	0	0		AMPH|p.E529K|1|0.17|ENSG00000078053|chr7:38394028-38394028|C/T|missense_variant	AMPH|p.E529K|1|0.17|ENSG00000078053|chr7:38394028-38394028|C/T|missense_variant	AMPH|p.E529K|1|0.17|ENSG00000078053|chr7:38394028-38394028|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	410.3782043457031	3	410.866464	1229.57756	-0.26808	-0.00011014	-0.17532	-7.2034E-05	-0.4434	-0.00018218	410.8663672020688	30.458	0.65683	30.458	30.2	30.857	0					20	12	2	0	0	0	0.99482	1	9840	9840		6.2344	4.4921	1	1844800			12441	124	8973	9044	12121	12121					-0.028044260152455536
ESAQRYWLPF	10	Unmodified	_ESAQRYWLPF_					0	0	0			REV__nc|ENSG00000151062|Q7Z3S7-2|CACNA2D4	REV__nc|ENSG00000151062|Q7Z3S7-2|CACNA2D4	MSMS	A375_MHC_IP_R2	2	433.28521728515625	3	432.8839	1295.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.077	1	56.827	56.327	57.327	0.75015								0	0	0	0.1552	1	21191	21191		1.9064	0	1		+		12442	19737	8974	9045	12122	12122					-0.006117980909721155
ESARAPWLL	9	Unmodified	_ESARAPWLL_					0	0	0			REV__ENST00000292524.5_1_8:145747288-145748023:+|nuORF	REV__ENST00000292524.5_1_8:145747288-145748023:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	521.1652221679688	2	521.787641	1041.56073	-0.56766	-0.0002962	-1.0495	-0.00054763	-1.6172	-0.00084382	521.7862134890569	89.757	0.85983	89.757	89.476	90.336	0					19	16	2	0	0	0	0.69507	1	33019	33019		13.906	0.86358	1	1444300	+		12443	23368	8975	9046	12123	12123					0.04161162680134112
ESARDPQVPPP	11	Unmodified	_ESARDPQVPPP_					0	0	0		ENST00000342112.9_1_9:101006372-101017832:-|nuORF;nc|ENSG00000095383|Q9BYX2-3|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2	ENST00000342112.9_1_9:101006372-101017832:-|nuORF	ENST00000342112.9_1_9:101006372-101017832:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	398.620361328125	3	398.20341	1191.5884	-0.47383	-0.00018868	0.19071	7.594E-05	-0.28312	-0.00011274	398.2036460745839	26.423	0.15173	27.083	26.957	27.109	0.65992					4	2	2	0	0	0	0.9889	1	8918	8918		4.1166	2.3744	1	656580			12444	2042	8976	9047	12124	12124					0.00027021149730899197
ESASITPLEDL	11	Unmodified	_ESASITPLEDL_					0	0	0		ENSG00000057608|ENST00000380191|GDI2;nc|ENSG00000057608|P50395-2|GDI2	ENSG00000057608|ENST00000380191|GDI2	ENSG00000057608|ENST00000380191|GDI2	MULTI-SECPEP	A375_MHC_IP_R1	1	391.9454040527344	3	392.199443	1173.5765	0.1693	6.6398E-05	1.4318	0.00056154	1.6011	0.00062794	392.1998135717652	33.781	0.45402	33.781	33.597	34.052	0					20	8	3	0	0	0	0.92455	1	11057	11057		9.2438	0	1	4725300			12445	1286	8977	9048	12125	12125					-0.0033464038413058006
ESASPQWLY	9	Unmodified	_ESASPQWLY_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	MSMS	A375_MHC_IP_R2	2	540.6771850585938	2	540.753464	1079.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.567	1	36.33	35.83	36.83	0.76338								0	0	0	0.15142	1	12907	12907		19.257	2.3147	1		+		12446	19795	8978	9049	12126	12126					-0.044191266903681026
ESAVKTNPSKY	11	Unmodified	_ESAVKTNPSKY_					0	0	0		nc|ENSG00000188803|Q6ZSJ9|SHISA6;nc|ENSG00000188803|Q6ZSJ9-2|SHISA6;ENSG00000188803|ENST00000441885|SHISA6	nc|ENSG00000188803|Q6ZSJ9|SHISA6	nc|ENSG00000188803|Q6ZSJ9|SHISA6	MSMS	A375_MHC_IP_R2	2	612.3816528320312	2	612.31696	1222.61937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.052	1	62.795	62.295	63.295	0.74263								0	0	0	0.16213	1	23520	23520		7.609	0.88579	1				12447	8937	8979	9050	12127	12127					0.01696174463972966
ESAWGDEED	9	Unmodified	_ESAWGDEED_					0	0	0		ENSG00000129946|ENST00000264554|SHC2	ENSG00000129946|ENST00000264554|SHC2	ENSG00000129946|ENST00000264554|SHC2	MULTI-SECPEP	A375_MHC_IP_R1	1	519.5881958007812	2	519.188351	1036.36215	-0.51587	-0.00026783	0.53878	0.00027973	0.022906	1.1893E-05	519.1886097274324	74.979	0.55846	74.979	74.704	75.262	0					23	10	3	0	0	0	0.65246	1	27298	27298		15.847	7.2539	1	3181800			12448	4215	8980	9051	12128	12128					-0.1545776748002936
ESAWGDEED	9	Unmodified	_ESAWGDEED_					0	0	0		ENSG00000129946|ENST00000264554|SHC2	ENSG00000129946|ENST00000264554|SHC2	ENSG00000129946|ENST00000264554|SHC2	MULTI-SECPEP	A375_MHC_IP_R2	2	519.5884399414062	2	519.188351	1036.36215	-0.70659	-0.00036685	0.25367	0.0001317	-0.45292	-0.00023515	519.1886237606298	74.354	0.76093	75.091	74.706	75.467	0.73751					26	14	3	0	0	0	0.65246	1	28188	28188		15.847	7.2539	1	3534300			12449	4215	8980	9051	12129	12129					-0.1545776748002936
ESAYNPHYV	9	Unmodified	_ESAYNPHYV_					0	0	0			REV__chr1:159951866-159953309|258|12.04|0.18|6.04|-|ENST00000368092|SLAMF9,SLAMF9	REV__chr1:159951866-159953309|258|12.04|0.18|6.04|-|ENST00000368092|SLAMF9,SLAMF9	MSMS	A375_MHC_IP_R2	2	540.142822265625	2	540.243264	1078.47197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.672	1	49.429	48.929	49.929	0.75737								0	0	0	0.15486	1	18278	18278		12.532	0	1		+		12450	15668	8981	9052	12130	12130					-0.0641229735019806
ESCFQGPHELY	11	Carbamidomethyl (C)	_ESC(Carbamidomethyl (C))FQGPHELY_	ESC(1)FQGPHELY		ESC(82)FQGPHELY		0	1	0		nc|ENSG00000159921|Q9Y223-2|GNE	nc|ENSG00000159921|Q9Y223-2|GNE	nc|ENSG00000159921|Q9Y223-2|GNE	MULTI-SECPEP	A375_MHC_IP_R1	1	684.1897583007812	2	683.790252	1365.56595	-0.59131	-0.00040433	0.022182	1.5168E-05	-0.56912	-0.00038916	683.7903068915516	55.575	0.35748	55.575	55.381	55.738	0					13	6	3	0	0	0	0.040044	1	19890	19890		81.915	72.532	1	2576100			12451	14706	8982	9053	12131	12131	66				-0.10220946310209911
ESCHHSYLSM	10	Unmodified	_ESCHHSYLSM_					0	0	0		nc|ENSG00000183378|Q7RTZ1|OVCH2;ENSG00000183378|ENST00000533663|OVCH2	nc|ENSG00000183378|Q7RTZ1|OVCH2	nc|ENSG00000183378|Q7RTZ1|OVCH2	MULTI-SECPEP	A375_MHC_IP_R2	2	597.4638061523438	2	597.239341	1192.46413	-0.55448	-0.00033116	0.87199	0.00052079	0.31751	0.00018963	597.2398584108913	76.521	0.55856	77.262	76.843	77.401	0.74052					16	10	2	0	0	0	0.91909	1	29086	29086		2.9952	0	1	2373100			12452	8489	8983	9054	12132	12132					-0.1244051593362201
ESCICNVCY	9	Unmodified	_ESCICNVCY_					0	0	0			REV__nc|ENSG00000101938|Q9BU40-3|CHRDL1	REV__nc|ENSG00000101938|Q9BU40-3|CHRDL1	MULTI-MSMS	A375_MHC_IP_R1	1	517.5928344726562	2	517.193013	1032.37147	-0.61655	-0.00031888	-0.016311	-8.436E-06	-0.63286	-0.00032731	517.1930037698257	37.027	0.65681	37.027	36.695	37.351	0					29	12	3	0	0	0	0.4867	1	12414	12414		20.454	5.8719	1	7177100	+		12453	17191	8984	9055	12133	12133					-0.14341736991354992
ESCICNVCY	9	Unmodified	_ESCICNVCY_					0	0	0			REV__nc|ENSG00000101938|Q9BU40-3|CHRDL1	REV__nc|ENSG00000101938|Q9BU40-3|CHRDL1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	517.193013	1032.37147	-0.61655	-0.00031888	-0.016311	-8.436E-06	-0.63286	-0.00032731	517.1930037698257	37.027	0.65681	37.027	36.695	37.351	0	-0.023231	5.2089E-05	NaN	20.454	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7177100	+		12454	17191	8984	9055							-0.14341736991354992
ESCPDFCCGTC	11	Unmodified	_ESCPDFCCGTC_					0	0	0		nc|ENSG00000164054|Q8N114-2|SHISA5;nc|ENSG00000164054|Q8N114-5|SHISA5;ENSG00000164054|ENST00000296444|SHISA5	nc|ENSG00000164054|Q8N114-2|SHISA5	nc|ENSG00000164054|Q8N114-2|SHISA5	MSMS	A375_MHC_IP_R1	1	582.728271484375	2	582.67687	1163.33919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.274	1	90.274	89.774	90.774	0								0	0	0	0.16334	1	33173	33173		1.3295	0.72803	1				12455	6765	8985	9056	12134	12134					-0.2359489245666282
ESCQNLTDFP	10	Unmodified	_ESCQNLTDFP_					0	0	0		AJAP1|p.E326K|1|0.33|ENSG00000196581|chr1:4772338-4772338|G/A|missense_variant;ENSG00000196581|ENST00000378191|AJAP1	AJAP1|p.E326K|1|0.33|ENSG00000196581|chr1:4772338-4772338|G/A|missense_variant	AJAP1|p.E326K|1|0.33|ENSG00000196581|chr1:4772338-4772338|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	578.728271484375	2	577.245146	1152.47574	-0.24474	-0.00014127	-0.38335	-0.00022129	-0.62809	-0.00036256	577.243115952931	77.025	0.86415	77.025	76.622	77.486	0					53	16	5	0	0	0	0.6806	2	28039	28039;28114		14.838	4.7643	1	9655600			12456	92	8986	9057	12135;12136	12135					-0.09439995638649634
ESCQNLTDFP	10	Unmodified	_ESCQNLTDFP_					0	0	0		AJAP1|p.E326K|1|0.33|ENSG00000196581|chr1:4772338-4772338|G/A|missense_variant;ENSG00000196581|ENST00000378191|AJAP1	AJAP1|p.E326K|1|0.33|ENSG00000196581|chr1:4772338-4772338|G/A|missense_variant	AJAP1|p.E326K|1|0.33|ENSG00000196581|chr1:4772338-4772338|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	578.7055053710938	2	577.245146	1152.47574	-0.17475	-0.00010087	-0.44109	-0.00025462	-0.61584	-0.00035549	577.2431553584356	76.464	0.81219	77.205	76.843	77.655	0.74052					48	15	5	0	0	0	0.6806	1	28969	28969		14.838	2.3067	1	11272000			12457	92	8986	9057	12137	12137					-0.09439995638649634
ESCVHGCPAF	10	Unmodified	_ESCVHGCPAF_					0	0	0			REV__ENST00000528752.1_1_11:66241221-66243635:+|nuORF	REV__ENST00000528752.1_1_11:66241221-66243635:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	525.6116333007812	2	525.212595	1048.41064	-0.65086	-0.00034184	-0.68753	-0.0003611	-1.3384	-0.00070294	525.2118913467731	65.538	0.61035	66.276	66.018	66.629	0.73811					16	11	2	0	0	0	0.9269	1	24882	24882		10.824	10.299	1	1537300	+		12458	21289	8987	9058	12138	12138					-0.11163268645486824
ESCVRRRY	8	Unmodified	_ESCVRRRY_					0	0	0		ENST00000465030.1_1_X:70280941-70288225:-|nuORF;ENST00000490561.6_1_X:70280209-70288156:-|nuORF;nc|ENSG00000147164|Q9UMY4-3|SNX12;ENSG00000147164|ENST00000374274|SNX12;nc|ENSG00000147164|Q9UMY4-1|SNX12	ENST00000465030.1_1_X:70280941-70288225:-|nuORF	ENST00000465030.1_1_X:70280941-70288225:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	534.1541748046875	2	534.772	1067.52945	-0.63544	-0.00033981	2.0861	0.0011156	1.4507	0.00077578	534.7734944044023	33.634	0.81081	33.634	33.241	34.052	0					22	15	2	0	0	0	0.94479	1	10931	10931		13.508	1.8676	1	2316500			12459	5665	8988	9059	12139	12139					-0.0016173362560039095
ESDDDYEHD	9	Unmodified	_ESDDDYEHD_					0	0	0			REV__ENSG00000146352|ENST00000275162|CLVS2	REV__ENSG00000146352|ENST00000275162|CLVS2	MSMS	A375_MHC_IP_R1	1	562.6848754882812	2	562.686172	1123.35779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.491	1	74.491	73.991	74.991	0								0	0	0	0.15486	1	27132	27132		10.824	3.5347	1		+		12460	19529	8989	9060	12140	12140					-0.19895276693614505
ESDDHMYTL	9	Unmodified	_ESDDHMYTL_					0	0	0			REV__ENSG00000164946|ENST00000380880|FREM1	REV__ENSG00000164946|ENST00000380880|FREM1	MULTI-SECPEP	A375_MHC_IP_R1	1	555.2218627929688	2	555.724046	1109.43354	-0.58112	-0.00032294	-0.46663	-0.00025932	-1.0477	-0.00058226	555.7238257792892	60.79	0.91618	60.79	60.363	61.279	0					27	17	2	0	0	0	0.75466	1	21995	21995		7.9102	6.0659	1	1648900	+		12461	20533	8990	9061	12141	12141					-0.11679971047033177
ESDDHMYTLRM	11	Unmodified	_ESDDHMYTLRM_					0	0	0			REV__ENSG00000164946|ENST00000380880|FREM1	REV__ENSG00000164946|ENST00000380880|FREM1	MULTI-MSMS	A375_MHC_IP_R1	1	466.9319152832031	3	466.532322	1396.57514	-0.40949	-0.00019104	-0.27026	-0.00012609	-0.67975	-0.00031713	466.53225677034897	27.102	0.35332	27.102	26.978	27.331	0					12	6	2	0	0	0	0.73421	1	8202	8202		4.8923	1.2996	1	5080800	+		12462	20533	8991	9062	12142	12142					-0.10728921016220738
ESDDPMAYI	9	Unmodified	_ESDDPMAYI_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000550479.1_1_12:104332030-104335334:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-SECPEP	A375_MHC_IP_R2	2	520.1527709960938	2	520.71569	1039.41683	-0.75316	-0.00039218	0.63273	0.00032947	-0.12044	-6.2714E-05	520.7159816740831	97.648	0.45769	98.404	98.178	98.636	0.75586					12	8	2	0	0	0	0.69504	1	37062	37062		18.135	18.135	1	1200300			12463	7095	8992	9063	12143	12143					-0.1013047193298462
ESDDSDDDLS	10	Unmodified	_ESDDSDDDLS_					0	0	0		nc|ENSG00000147166|Q9UKP3-2|ITGB1BP2;ENSG00000147166|ENST00000373829|ITGB1BP2	nc|ENSG00000147166|Q9UKP3-2|ITGB1BP2	nc|ENSG00000147166|Q9UKP3-2|ITGB1BP2	MSMS	A375_MHC_IP_R2	2	549.1756591796875	2	549.191288	1096.36802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.059	1	85.795	85.295	86.295	0.73601								0	0	0	0.15531	1	32337	32337		3.5965	0.70727	1				12464	5666	8993	9064	12144	12144					-0.17630713759035643
ESDEELRCY	9	Unmodified	_ESDEELRCY_					0	0	0		ENSG00000181409|ENST00000326724|AATK	ENSG00000181409|ENST00000326724|AATK	ENSG00000181409|ENST00000326724|AATK	MSMS	A375_MHC_IP_R1	1	572.2377319335938	2	572.234778	1142.455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.943	1	72.943	72.443	73.443	0								0	0	0	0.15486	1	26548	26548		12.532	2.4576	1				12465	8345	8994	9065	12145	12145					-0.11052586018286092
ESDEENKEADE	11	Unmodified	_ESDEENKEADE_					0	0	0			REV__nc|ENSG00000184110|Q99613-2|EIF3C	REV__nc|ENSG00000184110|Q99613-2|EIF3C	MSMS	A375_MHC_IP_R2	2	647.7264404296875	2	647.749501	1293.48445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.379	1	47.144	46.644	47.644	0.76519								0	0	0	0.16265	1	17368	17368		4.897	0.95262	1		+		12466	21796	8995	9066	12146	12146					-0.15055395259150828
ESDEVELSY	9	Unmodified	_ESDEVELSY_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-MSMS	A375_MHC_IP_R1	1	535.6376953125	2	535.729852	1069.44515	-0.78161	-0.00041873	0.30235	0.00016198	-0.47926	-0.00025675	535.7301108228801	38.535	0.25684	38.535	38.371	38.628	0					7	4	2	0	0	0	0.13491	1	13102	13102		44.407	15.92	1	1029800			12467	6014	8996	9067	12147	12147					-0.08679450752038065
ESDEVELSY	9	Unmodified	_ESDEVELSY_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-MSMS	A375_MHC_IP_R1	1	536.7239379882812	2	535.729852	1069.44515	-1.0076	-0.00053977	0.60884	0.00032617	-0.39871	-0.0002136	535.7300450378075	67.179	1.0188	67.179	66.836	67.854	0					53	19	4	0	0	0	0.17328	1	24319	24319		39.957	24.11	1	13456000			12468	6014	8996	9067	12148	12148					-0.08679450752038065
ESDEVELSY	9	Unmodified	_ESDEVELSY_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MSMS	A375_MHC_IP_R2	2	535.6370849609375	2	535.729852	1069.44515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.903	1	38.678	38.178	39.178	0.77451								0	0	0	0.089973	1	13907	13907		44.407	0	1				12469	6014	8996	9067	12149	12149					-0.08679450752038065
ESDFGFAPIDY	11	Unmodified	_ESDFGFAPIDY_					0	0	0			REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	MULTI-MSMS	A375_MHC_IP_R2	2	631.1987915039062	2	630.774593	1259.53463	-1.1107	-0.0007006	0.33629	0.00021213	-0.7744	-0.00048847	631.2770508964802	60.937	0.80714	61.682	61.314	62.121	0.74503					48	14	5	0	0	0	0.67989	1	23073	23073		17.113	0.54702	1	15472000	+		12470	17508	8997	9068	12150	12150					-0.08475196072640756
ESDFKAQTF	9	Unmodified	_ESDFKAQTF_					0	0	0			REV__nc|ENSG00000089177|Q96L93-6|KIF16B	REV__nc|ENSG00000089177|Q96L93-6|KIF16B	MSMS	A375_MHC_IP_R1	1	536.6599731445312	2	536.750921	1071.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.079	1	43.079	42.579	43.579	0								0	0	0	0.1535	1	14959	14959		15.847	7.2539	1		+		12471	16907	8998	9069	12151	12151					-0.04559430552990307
ESDFKAQTF	9	Unmodified	_ESDFKAQTF_					0	0	0			REV__nc|ENSG00000089177|Q96L93-6|KIF16B	REV__nc|ENSG00000089177|Q96L93-6|KIF16B	MSMS	A375_MHC_IP_R2	2	536.66015625	2	536.750921	1071.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.274	1	43.046	42.546	43.546	0.7724								0	0	0	0.15142	1	15721	15721		19.257	6.2145	1		+		12472	16907	8998	9069	12152	12152					-0.04559430552990307
ESDFKPYLY	9	Unmodified	_ESDFKPYLY_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	A375_MHC_IP_R1	1	581.6771240234375	2	581.276772	1160.53899	-0.16252	-9.4467E-05	0.36778	0.00021378	0.20526	0.00011931	581.2774311656968	72.953	0.55711	72.953	72.779	73.336	0					13	10	2	0	0	0	0.28475	1	26567	26567		48.346	23.672	1	1048900			12473	5930	8999	9070	12153	12153					-0.034856868590850354
ESDFKPYLY	9	Unmodified	_ESDFKPYLY_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	A375_MHC_IP_R2	2	581.6188354492188	2	581.276772	1160.53899	-0.49849	-0.00028976	0.98166	0.00057062	0.48318	0.00028086	581.277310582532	72.336	0.65806	73.072	72.62	73.278	0.73541					13	12	2	0	0	0	0.14422	1	27455	27455		52.268	25.385	1	1936700			12474	5930	8999	9070	12154	12154					-0.034856868590850354
ESDFQWPRDDH	11	Unmodified	_ESDFQWPRDDH_					0	0	0		ENSG00000044446|ENST00000379942|PHKA2	ENSG00000044446|ENST00000379942|PHKA2	ENSG00000044446|ENST00000379942|PHKA2	MSMS	A375_MHC_IP_R2	2	716.5623168945312	2	716.29983	1430.58511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.483	1	91.217	90.717	91.717	0.7345								0	0	0	0.16297	1	34428	34428		3.2813	0.28607	1				12475	1185	9000	9071	12155	12155					-0.11296273694961201
ESDFSNPLY	9	Unmodified	_ESDFSNPLY_					0	0	0		nc|ENSG00000174938|Q6UXD5-6|SEZ6L2;nc|ENSG00000174938|Q6UXD5-2|SEZ6L2;nc|ENSG00000174938|Q6UXD5-3|SEZ6L2;nc|ENSG00000174938|Q6UXD5|SEZ6L2;ENSG00000174938|ENST00000617533|SEZ6L2;nc|ENSG00000174938|Q6UXD5-5|SEZ6L2	nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	MULTI-MSMS	A375_MHC_IP_R1	1	536.6342163085938	2	536.235104	1070.45566	-0.91169	-0.00048888	0.2518	0.00013502	-0.65989	-0.00035386	536.2351256223495	84.588	0.81434	84.588	84.241	85.056	0					24	15	2	0	0	0	0.55471	1	30964	30964		17.113	7.7655	1	2907200			12476	7914	9001	9072	12156	12156					-0.07675423306932316
ESDFSNPLY	9	Unmodified	_ESDFSNPLY_					0	0	0		nc|ENSG00000174938|Q6UXD5-6|SEZ6L2;nc|ENSG00000174938|Q6UXD5-2|SEZ6L2;nc|ENSG00000174938|Q6UXD5-3|SEZ6L2;nc|ENSG00000174938|Q6UXD5|SEZ6L2;ENSG00000174938|ENST00000617533|SEZ6L2;nc|ENSG00000174938|Q6UXD5-5|SEZ6L2	nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	MULTI-SECPEP	A375_MHC_IP_R2	2	535.6121215820312	2	536.235104	1070.45566	-0.79699	-0.00042738	0.35788	0.00019191	-0.43912	-0.00023547	536.2352217730154	83.914	0.71645	84.654	84.305	85.022	0.73962					27	13	3	0	0	0	0.65623	1	31898	31898		32.305	18.798	1	3207200			12477	7914	9001	9072	12157	12157					-0.07675423306932316
ESDGEPEDSS	10	Unmodified	_ESDGEPEDSS_					0	0	0		ENSG00000144535|ENST00000325385|DIS3L2;ENST00000433430.5_1_2:233201010-233201337:+|nuORF	ENSG00000144535|ENST00000325385|DIS3L2	ENSG00000144535|ENST00000325385|DIS3L2	MSMS	A375_MHC_IP_R2	2	526.10888671875	2	526.188548	1050.36254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.407	1	91.142	90.642	91.642	0.7345								0	0	0	0.15451	1	34399	34399		6.2058	0.97511	1				12478	5491	9002	9073	12158	12158					-0.16062392550838922
ESDGKSRWFY	10	Unmodified	_ESDGKSRWFY_					0	0	0		ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	MULTI-MSMS	A375_MHC_IP_R1	1	638.1935424804688	2	637.793652	1273.57275	-0.85261	-0.00054379	0.55208	0.00035211	-0.30053	-0.00019168	637.7939088993427	46.806	0.61375	46.806	46.545	47.159	0					23	11	3	0	0	0	0.0042916	1	16423	16423		154.75	154.75	1	6098400			12479	5626	9003	9074	12159	12159					-0.053092653673502355
ESDGKSRWFY	10	Unmodified	_ESDGKSRWFY_					0	0	0		ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	MULTI-MSMS	A375_MHC_IP_R2	2	425.931640625	3	425.531527	1273.57275	-0.12283	-5.227E-05	0.071936	3.0611E-05	-0.050898	-2.1659E-05	425.53153273686	46.012	0.75446	46.777	46.353	47.108	0.76519					41	14	4	0	0	0	0.24209	1	17148	17148		44.945	29.696	1	24022000			12480	5626	9003	9074	12160	12160					-0.053092653673502355
ESDGKSRWFY	10	Unmodified	_ESDGKSRWFY_					0	0	0		ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	MULTI-MSMS	A375_MHC_IP_R2	2	638.193359375	2	637.793652	1273.57275	-0.72726	-0.00046384	0.14226	9.0729E-05	-0.58501	-0.00037311	637.793707582176	45.953	0.60537	46.718	46.453	47.058	0.76518					25	11	3	0	0	0	0.0064267	1	17184	17184		117.84	68.31	1	6272800			12481	5626	9003	9074	12161	12161					-0.053092653673502355
ESDGKSRWFY	10	Unmodified	_ESDGKSRWFY_					0	0	0		ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	425.531527	1273.57275	-0.27144	-0.0001155	0.34867	0.00014837	0.077239	3.2868E-05	425.5316647214768	46.826	0.92142	46.826	46.444	47.366	0	0.024767	0.00017833	NaN	44.945	42	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19916000			12482	5626	9003	9074							-0.053092653673502355
ESDHHQHLF	9	Unmodified	_ESDHHQHLF_					0	0	0			REV__ENSG00000135537|ENST00000368977|AFG1L	REV__ENSG00000135537|ENST00000368977|AFG1L	MULTI-MSMS	A375_MHC_IP_R2	2	575.1879272460938	2	575.257237	1148.49992	-0.26039	-0.00014979	-2.4954	-0.0014355	-2.7558	-0.0015853	575.2558477624386	74.824	0.60763	75.561	75.264	75.872	0.73751					23	11	3	0	0	0	0.6898	1	28311	28311		7.9102	0.3012	1	1778400	+		12483	18861	9004	9075	12162	12162					-0.06838974370111828
ESDIDDFVKFL	11	Unmodified	_ESDIDDFVKFL_					0	0	0		SLC7A14|p.G439D|1|0.89|ENSG00000013293|chr3:170480966-170480966|C/T|missense_variant	SLC7A14|p.G439D|1|0.89|ENSG00000013293|chr3:170480966-170480966|C/T|missense_variant	SLC7A14|p.G439D|1|0.89|ENSG00000013293|chr3:170480966-170480966|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	664.5090942382812	2	664.32445	1326.63435	-0.42111	-0.00027975	-1.3107	-0.00087074	-1.7318	-0.0011505	664.3233282378158	54.389	0.35394	54.389	54.213	54.567	0					10	6	2	0	0	0	0.99018	1	19469	19469		7.609	0	1	1842200			12484	29195	9005	9076	12163	12163					-0.01590378458718078
ESDIGESLKYL	11	Unmodified	_ESDIGESLKYL_					0	0	0			REV__CASP10|p.E121K|1|0.27|ENSG00000003400|chr2:201187719-201187719|G/A|missense_variant	REV__CASP10|p.E121K|1|0.27|ENSG00000003400|chr2:201187719-201187719|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	627.6751708984375	2	627.316625	1252.6187	-0.75027	-0.00047066	0.58185	0.000365	-0.16842	-0.00010565	627.3170222779311	95.946	0.66084	96.696	96.347	97.008	0.75045					26	12	3	0	0	0	0.95991	1	36507	36507		13.042	4.2971	1	2784500	+		12485	15579	9006	9077	12164	12164					0.0024933502422754827
ESDIGKGETY	10	Unmodified	_ESDIGKGETY_					0	0	0			REV__tr|U7SVH9|U7SVH9_FUSNUKnr4/Smi1-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01234PE=4SV=1	REV__tr|U7SVH9|U7SVH9_FUSNUKnr4/Smi1-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01234PE=4SV=1	MSMS	A375_MHC_IP_R1	1	549.663818359375	2	549.751118	1097.48768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.735	1	25.735	25.235	26.235	0								0	0	0	0.14686	1	7563	7563		23.79	7.6407	1		+		12486	28593	9007	9078	12165	12165					-0.057160556237931814
ESDINSVRY	9	Unmodified	_ESDINSVRY_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;ENST00000559541.1_1_15:52416976-52428016:-|nuORF	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-SECPEP	A375_MHC_IP_R1	1	542.1587524414062	2	541.759278	1081.504	-0.56343	-0.00030524	-0.14486	-7.8481E-05	-0.70829	-0.00038372	541.7591518721557	33.823	0.50523	33.823	33.597	34.103	0					27	9	4	0	0	0	0.023846	1	11062	11062		137.42	78.745	1	32504000			12487	1484	9008	9079	12166	12166					-0.033489296670495605
ESDINSVRY	9	Unmodified	_ESDINSVRY_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;ENST00000559541.1_1_15:52416976-52428016:-|nuORF	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-MSMS	A375_MHC_IP_R2	2	542.1589965820312	2	541.759278	1081.504	-1.0464	-0.00056688	0.082467	4.4677E-05	-0.9639	-0.0005222	541.7592715595267	33.164	0.50965	33.916	33.686	34.196	0.75225					28	9	4	0	0	0	0.001114	1	11860	11860		152.89	84.805	1	34589000			12488	1484	9008	9079	12167	12167					-0.033489296670495605
ESDITMSSLWS	11	Unmodified	_ESDITMSSLWS_					0	0	0			REV__CYTIP|p.M255I|1|0.27|ENSG00000115165|chr2:157415992-157415992|C/T|missense_variant	REV__CYTIP|p.M255I|1|0.27|ENSG00000115165|chr2:157415992-157415992|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	627.6753540039062	2	628.279186	1254.54382	-0.50714	-0.00031862	0.25769	0.0001619	-0.24944	-0.00015672	628.2792324918739	97.173	0.60839	97.173	96.73	97.338	0					12	11	2	0	0	0	0.92455	1	35599	35599		21.537	12.792	1	899400	+		12489	15963	9009	9080	12168	12168					-0.07327170778648906
ESDKFILLGY	10	Unmodified	_ESDKFILLGY_					0	0	0		nc|ENSG00000116138|Q9Y2G8-2|DNAJC16;ENSG00000116138|ENST00000375847|DNAJC16;ENST00000483270.1_1_1:15886792-15891842:+|nuORF	nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	MULTI-SECPEP	A375_MHC_IP_R1	1	593.2135620117188	2	592.813522	1183.61249	-0.31979	-0.00018958	0.49444	0.00029311	0.17465	0.00010353	592.8137204793375	103.45	0.45908	103.45	103.17	103.63	0					13	8	2	0	0	0	0.66604	1	38019	38019		45.74	11.338	1	1801900			12490	3374	9010	9081	12169	12169					0.028028615834045922
ESDKLRVYN	9	Unmodified	_ESDKLRVYN_					0	0	0			REV__SON-ITSN1|1|fusion	REV__SON-ITSN1|1|fusion	MULTI-SECPEP	A375_MHC_IP_R2	2	374.605712890625	3	375.196256	1122.56694	-0.031916	-1.1975E-05	0.96116	0.00036062	0.92924	0.00034865	375.19603751556383	38.24	0.45909	39.014	38.791	39.25	0.77451					22	8	4	0	0	0	0.76106	1	14068	14068		13.615	9.4254	1	1157100	+		12491	28024	9011	9082	12170	12170					0.010556361209864917
ESDLDYIQY	9	Unmodified	_ESDLDYIQY_					0	0	0		ENST00000437036.6_1_17:57189640-57232487:-|nuORF;ENSG00000182628|ENST00000330137|SKA2;ENST00000583976.1_1_17:57189640-57232487:-|nuORF	ENST00000437036.6_1_17:57189640-57232487:-|nuORF	ENST00000437036.6_1_17:57189640-57232487:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	573.65283203125	2	573.253494	1144.49243	-0.16004	-9.1741E-05	-0.51432	-0.00029483	-0.67435	-0.00038657	573.2531890491117	89.479	0.55617	90.211	89.886	90.442	0.7318					18	10	2	0	0	0	0.28475	1	34015	34015		39.957	20.7	1	2246200			12492	8425	9012	9083	12171	12171					-0.07403171481041682
ESDLISEPVH	10	Unmodified	_ESDLISEPVH_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	A375_MHC_IP_R1	1	563.1280517578125	2	563.274761	1124.53497	-0.32819	-0.00018486	-0.56344	-0.00031737	-0.89163	-0.00050223	563.2735101980477	82.798	0.35344	82.798	82.571	82.924	0					9	6	2	0	0	0	0.74754	1	30270	30270		22.736	6.5872	1	1165000	+		12493	21369	9013	9084	12172	12172					-0.022317763528008072
ESDLPGIRNY	10	Unmodified	_ESDLPGIRNY_					0	0	0			REV__AMIGO2|p.L82P|1|0.27|ENSG00000139211|chr12:47078758-47078758|A/G|missense_variant	REV__AMIGO2|p.L82P|1|0.27|ENSG00000139211|chr12:47078758-47078758|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	581.6820068359375	2	582.288202	1162.56185	-0.32841	-0.00019123	-0.28889	-0.00016821	-0.61729	-0.00035944	582.287976496443	27.54	0.70953	28.219	27.895	28.604	0.67857					29	13	3	0	0	0	0.6502	1	9531	9531		17.113	2.2746	1	11447000	+		12494	15390	9014	9085	12173	12173					-0.01292667741608966
ESDLRKNFQ	9	Unmodified	_ESDLRKNFQ_					0	0	0		ENSG00000047662|ENST00000265018|FAM184B	ENSG00000047662|ENST00000265018|FAM184B	ENSG00000047662|ENST00000265018|FAM184B	MULTI-SECPEP	A375_MHC_IP_R2	2	569.1879272460938	2	568.78837	1135.56219	-0.67438	-0.00038358	0.081405	4.6302E-05	-0.59297	-0.00033727	568.7883957686137	20.768	0.76117	21.379	20.855	21.616	0.61029					38	14	3	0	0	0	0.53748	1	6424	6424		24.021	0	1	4705900			12495	1207	9015	9086	12174	12174					-0.0001724802177704987
ESDNGMMGLSP	11	Unmodified	_ESDNGMMGLSP_					0	0	0		nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL	nc|ENSG00000123473|Q15468|STIL	nc|ENSG00000123473|Q15468|STIL	MULTI-SECPEP	A375_MHC_IP_R1	1	568.7086791992188	2	569.231181	1136.44781	-0.58672	-0.00033398	-0.50588	-0.00028796	-1.0926	-0.00062194	569.7316024784079	28.993	0.66034	28.993	28.592	29.252	0					20	12	2	0	0	0	0.98524	1	9019	9019		15.248	5.8654	1	4171500			12496	3850	9016	9087	12175	12175					-0.11495641890360275
ESDNNKYWLV	10	Unmodified	_ESDNNKYWLV_					0	0	0		nc|ENSG00000135047|P07711-3|CTSL;ENSG00000135047|ENST00000343150|CTSL	nc|ENSG00000135047|P07711-3|CTSL	nc|ENSG00000135047|P07711-3|CTSL	MULTI-SECPEP	A375_MHC_IP_R1	1	633.669189453125	2	634.30131	1266.58807	-0.70321	-0.00044605	-3.1527	-0.0019998	-3.8559	-0.0024458	634.8007662005848	31.287	0.30334	31.287	31.211	31.514	0					6	5	2	0	0	0	0.83355	1	10016	10016		17.113	0.96379	1	1029300			12497	4637	9017	9088	12176	12176					-0.0345639857016522
ESDNRFYFAE	10	Unmodified	_ESDNRFYFAE_					0	0	0			REV__ENSG00000128000|ENST00000434248|ZNF780B	REV__ENSG00000128000|ENST00000434248|ZNF780B	MULTI-MSMS	A375_MHC_IP_R1	1	638.6674194335938	2	639.275292	1276.53603	-0.65001	-0.00041554	-1.0135	-0.00064788	-1.6635	-0.0010634	639.2750850528735	61.633	0.97107	61.633	61.126	62.097	0					40	18	3	0	0	0	0.70329	1	22240	22240		10.824	0.75	1	9306800	+		12498	18439	9018	9089	12177	12177					-0.09117561983907763
ESDNRFYFAE	10	Unmodified	_ESDNRFYFAE_					0	0	0			REV__ENSG00000128000|ENST00000434248|ZNF780B	REV__ENSG00000128000|ENST00000434248|ZNF780B	MULTI-MSMS	A375_MHC_IP_R2	2	639.5183715820312	2	639.275292	1276.53603	-1.06	-0.00067761	-0.19146	-0.0001224	-1.2514	-0.00080001	639.2751210782994	60.92	0.65624	61.665	61.364	62.02	0.74503					22	12	2	0	0	0	0.70329	1	23116	23116		10.824	1.4408	1	8274400	+		12499	18439	9018	9089	12178	12178					-0.09117561983907763
ESDPAYQQY	9	Unmodified	_ESDPAYQQY_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	A375_MHC_IP_R1	1	550.7393188476562	2	550.730186	1099.44582	-0.60093	-0.00033095	0.3453	0.00019016	-0.25564	-0.00014079	550.730292438942	38.552	0.81461	38.552	38.168	38.983	0					35	15	3	0	0	0	0.2002	1	12986	12986		37.974	22.127	1	20302000			12500	6152	9019	9090	12179	12179					-0.09992611312327426
ESDPAYQQY	9	Unmodified	_ESDPAYQQY_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	A375_MHC_IP_R2	2	550.7266235351562	2	550.730186	1099.44582	-0.99127	-0.00054592	0.17785	9.7949E-05	-0.81342	-0.00044798	550.730224163789	37.951	0.71661	38.725	38.382	39.098	0.77451					41	13	4	0	0	0	0.12771	1	14042	14042		45.7	28.587	1	18045000			12501	6152	9019	9090	12180	12180					-0.09992611312327426
ESDPIVAQYPY	11	Unmodified	_ESDPIVAQYPY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R2	2	640.9899291992188	2	641.303518	1280.59248	-0.81556	-0.00052302	-1.6374	-0.0010501	-2.453	-0.0015731	641.8036522753117	66.86	0.51038	67.596	67.24	67.75	0.73631					16	9	2	0	0	0	0.99738	1	25266	25266		5.2969	0.96765	1	1079500			12502	6151;14694	9020	9091	12181	12181					-0.036589341472335946
ESDPPCCLVTY	11	2 Carbamidomethyl (C)	_ESDPPC(Carbamidomethyl (C))C(Carbamidomethyl (C))LVTY_	ESDPPC(1)C(1)LVTY		ESDPPC(42)C(42)LVTY		0	2	0			REV__nc|ENSG00000108813|Q92988-3|DLX4	REV__nc|ENSG00000108813|Q92988-3|DLX4	MULTI-SECPEP	A375_MHC_IP_R1	1	671.1776733398438	2	670.778496	1339.54244	-0.93798	-0.00062918	0.54901	0.00036827	-0.38897	-0.00026091	670.7788161002247	26.269	0.40595	26.269	26.118	26.524	0					19	7	3	0	0	0	0.62518	1	7823	7823		41.84	21.386	1	12671000	+		12503	27166	9021	9092	12182	12182	89;90				-0.11375128139025037
ESDPPCCLVTY	11	2 Carbamidomethyl (C)	_ESDPPC(Carbamidomethyl (C))C(Carbamidomethyl (C))LVTY_	ESDPPC(1)C(1)LVTY		ESDPPC(50)C(50)LVTY		0	2	0			REV__nc|ENSG00000108813|Q92988-3|DLX4	REV__nc|ENSG00000108813|Q92988-3|DLX4	MULTI-MSMS	A375_MHC_IP_R2	2	671.1782836914062	2	670.778496	1339.54244	-1.2099	-0.0008116	0.62958	0.00042231	-0.58036	-0.00038929	670.77894460756	25.743	0.40806	26.403	26.245	26.653	0.65992					20	7	3	0	0	0	0.25866	1	8645	8645		49.933	22.304	1	10854000	+		12504	27166	9021	9092	12183	12183	89;90				-0.11375128139025037
ESDPPCCLVTY	11	2 Carbamidomethyl (C)	_ESDPPC(Carbamidomethyl (C))C(Carbamidomethyl (C))LVTY_					0	2	0			REV__nc|ENSG00000108813|Q92988-3|DLX4	REV__nc|ENSG00000108813|Q92988-3|DLX4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	670.778496	1339.54244	-1.2099	-0.0008116	0.62958	0.00042231	-0.58036	-0.00038929	670.77894460756	25.743	0.40806	26.403	26.245	26.653	0.65992	0.066775	3.6478E-05	NaN	49.933	20	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10854000	+		12505	27166	9021	9092			89;90				-0.11375128139025037
ESDQPRDY	8	Unmodified	_ESDQPRDY_					0	0	0			REV__ENSG00000128578|ENST00000249344|STRIP2	REV__ENSG00000128578|ENST00000249344|STRIP2	MULTI-MSMS	A375_MHC_IP_R1	1	506.1744384765625	2	505.214703	1008.41485	-0.33606	-0.00016978	-0.57863	-0.00029233	-0.91469	-0.00046211	505.2143839791655	33.863	0.50523	33.863	33.597	34.103	0					21	9	3	0	0	0	0.77702	1	11058	11058		5.7604	1.0044	1	6899600	+		12506	18454	9022	9093	12184	12184					-0.0890176462656882
ESDRNYYF	8	Unmodified	_ESDRNYYF_					0	0	0			REV__REN|p.S235F|1|0.08|ENSG00000143839|chr1:204156791-204156791|G/A|missense_variant	REV__REN|p.S235F|1|0.08|ENSG00000143839|chr1:204156791-204156791|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	547.6629638671875	2	547.232896	1092.45124	-0.97729	-0.00053481	0.099023	5.4189E-05	-0.87827	-0.00048062	547.232741521243	34.671	0.25286	35.434	35.223	35.475	0.76338					6	4	2	0	0	0	0.93416	1	12454	12454		9.3474	0	1	1801400	+		12507	19390	9023	9094	12185	12185					-0.0912888772986662
ESDSRQIFY	9	Unmodified	_ESDSRQIFY_					0	0	0		ENSG00000145740|ENST00000396591|SLC30A5;SLC30A5|p.A465Cfs*6|1|0.18|ENSG00000145740|chr5:69117344-69117345|-/T|frameshift_variant;nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF	ENSG00000145740|ENST00000396591|SLC30A5	ENSG00000145740|ENST00000396591|SLC30A5	MULTI-MSMS	A375_MHC_IP_R1	1	573.1675415039062	2	572.767103	1143.51965	0.098981	5.6693E-05	-0.24113	-0.00013811	-0.14215	-8.1419E-05	572.7669582556294	48.298	1.5673	48.298	47.768	49.336	0					77	30	5	0	0	0	0.0099737	2	16953	16953;17180		96.367	42.534	1	130610000			12508	5577	9024	9095	12186;12187	12186					-0.046366431500018734
ESDSRQIFY	9	Unmodified	_ESDSRQIFY_					0	0	0		ENSG00000145740|ENST00000396591|SLC30A5;SLC30A5|p.A465Cfs*6|1|0.18|ENSG00000145740|chr5:69117344-69117345|-/T|frameshift_variant;nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF	ENSG00000145740|ENST00000396591|SLC30A5	ENSG00000145740|ENST00000396591|SLC30A5	MULTI-MSMS	A375_MHC_IP_R2	2	573.16650390625	2	572.767103	1143.51965	-0.1023	-5.8593E-05	-0.28431	-0.00016284	-0.38661	-0.00022144	572.766899753028	47.488	1.7224	48.249	47.766	49.489	0.76127					88	33	5	0	0	0	0.066859	1	17998	17998		57.722	19.546	1	125300000			12509	5577	9024	9095	12188	12188					-0.046366431500018734
ESDTIHDDFSY	11	Unmodified	_ESDTIHDDFSY_					0	0	0			REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	MULTI-SECPEP	A375_MHC_IP_R1	1	664.5091552734375	2	664.767497	1327.52044	-0.51261	-0.00034077	0.17128	0.00011386	-0.34134	-0.00022691	664.7676568300036	38.56	0.56285	38.56	38.319	38.882	0					25	10	3	0	0	0	0.9889	1	13066	13066		12.241	1.4411	1	4873800	+		12510	18412	9025	9096	12189	12189					-0.1302189329162502
ESDTSSPIDP	10	Unmodified	_ESDTSSPIDP_					0	0	0			REV__FBXO7|p.N86D|1|0.35|ENSG00000100225|chr22:32479114-32479114|A/G|missense_variant	REV__FBXO7|p.N86D|1|0.35|ENSG00000100225|chr22:32479114-32479114|A/G|missense_variant	MSMS	A375_MHC_IP_R1	1	524.1610717773438	2	524.227476	1046.4404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.845	1	69.845	69.345	70.345	0								0	0	0	0.15353	1	25350	25350		9.3831	0.78985	1		+		12511	26621	9026	9097	12190	12190					-0.08096334894798929
ESDVLCLYAY	10	Unmodified	_ESDVLCLYAY_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	A375_MHC_IP_R2	2	588.16650390625	2	588.26809	1174.52163	-0.65952	-0.00038797	0.32932	0.00019373	-0.33019	-0.00019424	588.268203510947	55.427	0.60923	56.178	55.779	56.388	0.75075					13	11	2	0	0	0	0.53946	1	20982	20982		25.399	4.9457	1	1451600			12512	4900	9027	9098	12191	12191					-0.05865350456406304
ESDWSNEEV	9	Unmodified	_ESDWSNEEV_					0	0	0			REV__ENSG00000148513|ENST00000361713|ANKRD30A	REV__ENSG00000148513|ENST00000361713|ANKRD30A	MSMS	A375_MHC_IP_R1	1	547.6824951171875	2	547.717276	1093.42	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.15	1	83.15	82.65	83.65	0								0	0	0	0.15486	1	30420	30420		12.532	1.7076	1		+		12513	19638	9028	9099	12192	12192					-0.1229750555460214
ESDYLDMHYFH	11	Unmodified	_ESDYLDMHYFH_					0	0	0			REV__nc|ENSG00000186628|A1L4K1-2|FSD2	REV__nc|ENSG00000186628|A1L4K1-2|FSD2	MSMS	A375_MHC_IP_R1	1	728.792724609375	2	728.795534	1455.57652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.1	1	88.1	87.6	88.6	0								0	0	0	0.1624	1	32336	32336		6.2058	2.9245	1		+		12514	21977	9029	9100	12193	12193					-0.13304963655809843
ESEAHNYELF	10	Unmodified	_ESEAHNYELF_					0	0	0			REV__ENST00000536336.5_1_11:18633859-18655855:-|nuORF	REV__ENST00000536336.5_1_11:18633859-18655855:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	620.170166015625	2	619.769842	1237.52513	-0.36908	-0.00022874	1.2809	0.00079383	0.91177	0.00056509	619.7699190139526	47.442	0.76297	47.442	47.107	47.87	0					47	14	5	0	0	0	0.17241	1	16663	16663		62.573	0	1	17724000	+		12515	21544	9030	9101	12194	12194					-0.08412964358217323
ESECSGNPDL	10	Unmodified	_ESECSGNPDL_					0	0	0			REV__CUZD1|p.D82N|1|0.45|ENSG00000138161|chr10:122839221-122839221|C/T|missense_variant	REV__CUZD1|p.D82N|1|0.45|ENSG00000138161|chr10:122839221-122839221|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	525.684326171875	2	525.705854	1049.39715	-0.42777	-0.00022488	0.57841	0.00030407	0.15064	7.9191E-05	525.706373396174	54.593	0.81218	54.593	54.263	55.075	0					21	15	2	0	0	0	0.70496	1	19365	19365		10.074	0.6908	1	2110500	+		12516	15941	9031	9102	12195	12195					-0.12556847943733374
ESEDLNIYDQR	11	Unmodified	_ESEDLNIYDQR_					0	0	0			REV__ENSG00000089693|ENST00000203630|MLF2	REV__ENSG00000089693|ENST00000203630|MLF2	MULTI-MSMS	A375_MHC_IP_R1	1	691.7147827148438	2	691.315145	1380.61574	-0.3381	-0.00023373	-0.29062	-0.00020091	-0.62871	-0.00043464	691.3150661430466	44.445	0.4618	44.445	44.113	44.575	0					13	8	2	0	0	0	0.53744	1	15519	15519		41.956	14.327	1	2532200	+		12517	16918	9032	9103	12196	12196					-0.059345401005884924
ESEDLNIYDQR	11	Unmodified	_ESEDLNIYDQR_					0	0	0			REV__ENSG00000089693|ENST00000203630|MLF2	REV__ENSG00000089693|ENST00000203630|MLF2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	691.315145	1380.61574	-0.3381	-0.00023373	-0.29062	-0.00020091	-0.62871	-0.00043464	691.3150661430466	44.445	0.4618	44.445	44.113	44.575	0	-0.038989	-0.00014608	NaN	41.956	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2532200	+		12518	16918	9032	9103							-0.059345401005884924
ESEDLNIYDQR	11	Unmodified	_ESEDLNIYDQR_					0	0	0			REV__ENSG00000089693|ENST00000203630|MLF2	REV__ENSG00000089693|ENST00000203630|MLF2	MULTI-MATCH	A375_MHC_IP_R2	2		2	691.315145	1380.61574	-0.47748	-0.00033009	-0.076527	-5.2904E-05	-0.554	-0.00038299	691.3150430593766	43.754	0.45325	44.523	44.329	44.782	0.76909	0.038989	0.00014993	NaN	41.956	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2302600	+		12519	16918	9032	9103							-0.059345401005884924
ESEDPDYYQY	10	Unmodified	_ESEDPDYYQY_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	A375_MHC_IP_R1	1	654.7295532226562	2	654.748773	1307.48299	-0.44153	-0.00028909	0.067036	4.3892E-05	-0.3745	-0.0002452	654.7487716471305	57.843	1.5732	57.843	57.313	58.887	0					100	30	6	0	0	0	0.0087379	4	20637	20637;20648;20866;20923		118.89	88.987	1	125380000			12520	9951	9033	9104	12197;12198;12199;12200	12197					-0.158449845572477
ESEDPDYYQY	10	Unmodified	_ESEDPDYYQY_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	A375_MHC_IP_R2	2	654.69873046875	2	654.748773	1307.48299	-1.2009	-0.0007863	0.33936	0.0002222	-0.86156	-0.00056411	654.7489677712219	57.346	1.4209	58.095	57.611	59.032	0.74894					101	27	6	0	0	0	0.0048327	4	21799	21572;21799;21803;21982		107.19	81.788	1	128120000			12521	9951	9033	9104	12201;12202;12203;12204	12202					-0.158449845572477
ESEDPNYYQY	10	Unmodified	_ESEDPNYYQY_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	MULTI-MSMS	A375_MHC_IP_R1	1	654.6556396484375	2	654.256765	1306.49898	-0.30336	-0.00019848	-0.19591	-0.00012817	-0.49927	-0.00032665	654.2565829414967	54.444	0.86134	54.444	54.063	54.924	0					50	16	4	0	0	0	0.011669	2	19380	19380;19478		114.2	114.2	1	18938000			12522	7876	9034	9105	12205;12206	12205					-0.14201278320319943
ESEDPNYYQY	10	Unmodified	_ESEDPNYYQY_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	MULTI-MSMS	A375_MHC_IP_R2	2	654.6564331054688	2	654.256765	1306.49898	-1.1983	-0.00078402	0.18925	0.00012382	-1.0091	-0.0006602	654.2567594861068	53.993	0.96843	54.744	54.301	55.27	0.75105					49	18	4	0	0	0	0.0038254	1	20318	20318		99.755	84.917	1	20632000			12523	7876	9034	9105	12207	12207					-0.14201278320319943
ESEEAVQFIN	10	Unmodified	_ESEEAVQFIN_					0	0	0		nc|ENSG00000174844|Q6ZR08|DNAH12;ENSG00000174844|ENST00000495027|DNAH12	nc|ENSG00000174844|Q6ZR08|DNAH12	nc|ENSG00000174844|Q6ZR08|DNAH12	MSMS	A375_MHC_IP_R2	2	583.1995849609375	2	583.272218	1164.52988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.59	1	90.322	89.822	90.822	0.7318								0	0	0	0.15158	1	34091	34091		14.838	0	1				12524	7909	9035	9106	12208	12208					-0.04580080215419002
ESEEGKRRKRH	11	Unmodified	_ESEEGKRRKRH_					0	0	0			REV__RBBP6|p.E1056Nfs*55|1|0.28|ENSG00000122257|chr16:24569855-24569855|T/-|frameshift_variant	REV__RBBP6|p.E1056Nfs*55|1|0.28|ENSG00000122257|chr16:24569855-24569855|T/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	706.3237915039062	2	706.37928	1410.74401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.889	1	80.889	80.389	81.389	0								0	0	0	0.16249	1	29554	29554		5.7319	0	1		+		12525	18198	9036	9107	12209	12209					0.055064847238327275
ESEESRMAGEY	11	Unmodified	_ESEESRMAGEY_					0	0	0		CON__Q6IME9	CON__Q6IME9	CON__Q6IME9	MULTI-SECPEP	A375_MHC_IP_R2	2	429.61346435546875	3	429.843442	1286.5085	-0.74039	-0.00031825	0.35254	0.00015154	-0.38785	-0.00016671	430.1780111063088	33.672	0.55676	34.425	34.196	34.753	0.75225					15	10	2	0	0	0	0.99424	1	12088	12088		4.1166	2.2103	1	2800200		+	12526	625	9037	9108	12210	12210					-0.12329833306421278
ESEHVITKY	9	Unmodified	_ESEHVITKY_					0	0	0			REV__nc|ENSG00000138663|Q9BT78-2|COPS4	REV__nc|ENSG00000138663|Q9BT78-2|COPS4	MULTI-MSMS	A375_MHC_IP_R2	2	553.2053833007812	2	553.279846	1104.54514	-0.87948	-0.0004866	0.2915	0.00016128	-0.58798	-0.00032532	553.2799945687206	72.666	1.1688	73.401	72.872	74.041	0.73541					26	22	2	0	0	0	0.60101	1	27637	27637		14.838	2.3067	1	3146500	+		12527	19111	9038	9109	12211	12211					-0.0029516862757645868
ESEHVITKY	9	Unmodified	_ESEHVITKY_					0	0	0			REV__nc|ENSG00000138663|Q9BT78-2|COPS4	REV__nc|ENSG00000138663|Q9BT78-2|COPS4	MULTI-MATCH	A375_MHC_IP_R1	1		2	553.279846	1104.54514	-0.54733	-0.00030283	0.42584	0.00023561	-0.12149	-6.7218E-05	553.279993840215	73.25	1.6227	73.25	72.372	73.995	0	-0.075473	6.7231E-05	NaN	14.838	25	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2998000	+		12528	19111	9038	9109							-0.0029516862757645868
ESEINQDMQN	10	Unmodified	_ESEINQDMQN_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-6|TTN	MSMS	A375_MHC_IP_R2	2	604.2003173828125	2	604.248417	1206.48228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.35	1	102.11	101.61	102.61	0.76428								0	0	0	0.15391	1	38415	38415		8.1555	0.24537	1		+		12529	27303	9039	9110	12212	12212					-0.11270102477919863
ESEKCLKKVM	10	Unmodified	_ESEKCLKKVM_					0	0	0			REV__ENST00000520828.5_1_8:141935721-141935751:-|nuORF	REV__ENST00000520828.5_1_8:141935721-141935751:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	398.61773681640625	3	398.878882	1193.61482	-0.10702	-4.2688E-05	0.52543	0.00020958	0.41841	0.00016689	398.87902875143516	20.391	0.8133	20.391	19.98	20.793	0					21	15	2	0	0	0	0.91328	1	5075	5075		5.7834	2.4638	1	3551500	+		12530	25709	9040	9111	12213	12213					0.025752507251581847
ESEKEEEIS	9	Unmodified	_ESEKEEEIS_					0	0	0			REV__nc|ENSG00000171877|Q7Z6J6-2|FRMD5	REV__nc|ENSG00000171877|Q7Z6J6-2|FRMD5	MSMS	A375_MHC_IP_R1	1	540.1978759765625	2	540.240583	1078.46661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.874	1	66.874	66.374	67.374	0								0	0	0	0.15486	1	24229	24229		11.64	0	1		+		12531	21106	9041	9112	12214	12214					-0.0694806572332709
ESEKEWYFG	9	Unmodified	_ESEKEWYFG_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MSMS	A375_MHC_IP_R2	2	587.6483154296875	2	587.756204	1173.49785	-0.62209	-0.00036564	-0.81213	-0.00047733	-1.4342	-0.00084297	587.7558635778877	81.957	0.45829	82.7	82.431	82.889	0.74293					11	8	2	0	0	0	0.12592	1	31148	31148		46.021	9.9768	1	1231000			12532	4973	9042	9113	12215	12215					-0.08195447898583552
ESEKLYSFY	9	Unmodified	_ESEKLYSFY_					0	0	0		nc|ENSG00000185420|Q9H7B4-3|SMYD3;ENSG00000185420|ENST00000490107|SMYD3;ENST00000462422.5_1_1:246216281-246670414:-|nuORF;ENST00000470863.1_1_1:246490478-246670519:-|nuORF	nc|ENSG00000185420|Q9H7B4-3|SMYD3	nc|ENSG00000185420|Q9H7B4-3|SMYD3	MULTI-MSMS	A375_MHC_IP_R1	1	583.6740112304688	2	583.274229	1164.53391	-0.23868	-0.00013922	-0.26393	-0.00015395	-0.50262	-0.00029316	583.2736783614934	68.735	0.50601	68.735	68.463	68.969	0					16	9	3	0	0	0	0.2002	1	24924	24924		37.974	3.8716	1	2441800			12533	8665	9043	9114	12216	12216					-0.04177990721700553
ESEKTINKSAF	11	Unmodified	_ESEKTINKSAF_					0	0	0			REV__ENSG00000164309|ENST00000446378|CMYA5	REV__ENSG00000164309|ENST00000446378|CMYA5	MULTI-SECPEP	A375_MHC_IP_R2	2	627.7225341796875	2	627.322242	1252.62993	-0.74685	-0.00046851	0.70434	0.00044185	-0.042508	-2.6666E-05	627.3225870646288	67.885	0.45789	68.621	68.358	68.816	0.73511					13	8	2	0	0	0	0.99018	1	25784	25784		11.495	2.1116	1	1516700	+		12534	20481	9044	9115	12217	12217					0.013721571183850756
ESEKYYSI	8	Unmodified	_ESEKYYSI_					0	0	0		ENSG00000165895|ENST00000298815|ARHGAP42	ENSG00000165895|ENST00000298815|ARHGAP42	ENSG00000165895|ENST00000298815|ARHGAP42	MSMS	A375_MHC_IP_R1	1	509.7043151855469	2	509.740022	1017.46549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.504	1	74.504	74.004	75.004	0								0	0	0	0.16876	1	27137	27137		21.747	4.6601	1				12535	6999	9045	9116	12218	12218					-0.04254235301561948
ESELQNTAY	9	Unmodified	_ESELQNTAY_					0	0	0		ENST00000539508.5_1_9:13136054-13190160:-|nuORF;MPDZ|p.G1669Cfs*20|1|0.13|ENSG00000107186|chr9:13122119-13122120|-/AGCCAGGCCGGCA|frameshift_variant;nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ	ENST00000539508.5_1_9:13136054-13190160:-|nuORF	ENST00000539508.5_1_9:13136054-13190160:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	527.663818359375	2	527.738011	1053.46147	-0.58304	-0.00030769	1.3392	0.00070674	0.75615	0.00039905	527.7383603342746	40.902	0.80811	40.902	40.509	41.317	0					30	15	4	0	0	0	0.13797	2	14069	14069;14112		43.858	16.975	1	3647500			12536	2731	9046	9117	12219;12220	12219					-0.06312324795294444
ESELQNTAY	9	Unmodified	_ESELQNTAY_					0	0	0		ENST00000539508.5_1_9:13136054-13190160:-|nuORF;MPDZ|p.G1669Cfs*20|1|0.13|ENSG00000107186|chr9:13122119-13122120|-/AGCCAGGCCGGCA|frameshift_variant;nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ	ENST00000539508.5_1_9:13136054-13190160:-|nuORF	ENST00000539508.5_1_9:13136054-13190160:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	528.1376953125	2	527.738011	1053.46147	-0.5573	-0.00029411	0.23473	0.00012387	-0.32257	-0.00017023	527.7382891937012	40.247	0.70958	41.022	40.676	41.386	0.77451					19	13	2	0	0	0	0.018261	1	14896	14896		85.642	35.709	1	3156100			12537	2731	9046	9117	12221	12221					-0.06312324795294444
ESELSSEIKYK	11	Unmodified	_ESELSSEIKYK_					0	0	0		ENSG00000153132|ENST00000325617|CLGN;nc|ENSG00000153132|O14967-2|CLGN	ENSG00000153132|ENST00000325617|CLGN	ENSG00000153132|ENST00000325617|CLGN	MULTI-MSMS	A375_MHC_IP_R1	1	657.2346801757812	2	656.835182	1311.65581	-0.51522	-0.00033842	0.30044	0.00019734	-0.21478	-0.00014108	656.8353582569816	58.33	0.55858	58.33	58.024	58.582	0					32	10	4	0	0	0	0.45155	1	20916	20916		34.932	7.3033	1	6752000			12538	6009	9047	9118	12222	12222					0.012450065699795232
ESELSSEIKYK	11	Unmodified	_ESELSSEIKYK_					0	0	0		ENSG00000153132|ENST00000325617|CLGN;nc|ENSG00000153132|O14967-2|CLGN	ENSG00000153132|ENST00000325617|CLGN	ENSG00000153132|ENST00000325617|CLGN	MULTI-SECPEP	A375_MHC_IP_R2	2	657.2344970703125	2	656.835182	1311.65581	-1.2151	-0.00079811	0.29584	0.00019432	-0.91925	-0.0006038	656.8353122387305	57.565	0.6101	58.314	58.069	58.679	0.74894					25	11	3	0	0	0	0.94168	1	21754	21754		15.248	2.206	1	8420400			12539	6009	9047	9118	12223	12223					0.012450065699795232
ESELVRSQL	9	Unmodified	_ESELVRSQL_					0	0	0			REV__ENSG00000123572|ENST00000243300|NRK	REV__ENSG00000123572|ENST00000243300|NRK	MULTI-SECPEP	A375_MHC_IP_R1	1	531.1849975585938	2	530.785296	1059.55604	-0.63896	-0.00033915	0.28033	0.0001488	-0.35863	-0.00019035	530.7854281531465	58.252	0.45661	58.252	58.075	58.531	0					15	8	2	0	0	0	0.28216	1	20973	20973		49.933	1.5872	1	2542000	+		12540	18249	9048	9119	12224	12224					0.028642337467317702
ESELVSSSNR	10	Unmodified	_ESELVSSSNR_					0	0	0		ENST00000530642.1_1_11:126145145-126145370:+|nuORF	ENST00000530642.1_1_11:126145145-126145370:+|nuORF	ENST00000530642.1_1_11:126145145-126145370:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	555.1974487304688	2	554.267467	1106.52038	-0.7358	-0.00040783	1.1043	0.00061207	0.3685	0.00020424	554.2695133989727	45.986	1.0598	46.751	46.048	47.108	0.76519					49	20	4	0	0	0	0.48529	1	17018	17018		29.082	0.59474	1	9978500			12541	13151	9049	9120	12225	12225					-0.02861848500947417
ESEMEVMEL	9	Unmodified	_ESEMEVMEL_					0	0	0		nc|ENSG00000242498|Q7Z6K5-2|ARPIN;ENSG00000242498|ENST00000357484|ARPIN	nc|ENSG00000242498|Q7Z6K5-2|ARPIN	nc|ENSG00000242498|Q7Z6K5-2|ARPIN	MULTI-MSMS	A375_MHC_IP_R2	2	549.1306762695312	2	548.730483	1095.44641	-1.0549	-0.00057887	1.3231	0.00072602	0.26817	0.00014715	548.73121791712	57.89	0.65732	58.639	58.272	58.929	0.74894					17	12	2	0	0	0	0.55818	1	21910	21910		16.942	1.0951	1	1930300			12542	14915	9050	9121	12226	12226					-0.09749275979129379
ESEMTSESEE	10	Unmodified	_ESEMTSESEE_					0	0	0		nc|ENSG00000103723|Q13367-3|AP3B2;nc|ENSG00000103723|Q13367|AP3B2;ENSG00000103723|ENST00000535359|AP3B2;ENST00000543938.5_1_15:83328314-83349061:-|nuORF	nc|ENSG00000103723|Q13367-3|AP3B2	nc|ENSG00000103723|Q13367-3|AP3B2	MULTI-MSMS	A375_MHC_IP_R2	2	579.1577758789062	2	579.211166	1156.40778	-0.4836	-0.0002801	0.71323	0.00041311	0.22964	0.00013301	579.2116307019996	36.379	0.66218	37.15	36.799	37.461	0.7709					36	12	4	0	0	0	0.71944	1	13172	13172		3.5965	3.5965	1	7427200			12543	2467	9051	9122	12227	12227					-0.1641691007996542
ESENIPFTL	9	Unmodified	_ESENIPFTL_					0	0	0		ENSG00000175445|ENST00000650287|LPL	ENSG00000175445|ENST00000650287|LPL	ENSG00000175445|ENST00000650287|LPL	MULTI-MSMS	A375_MHC_IP_R1	1	525.1683349609375	2	525.261122	1048.50769	-0.34818	-0.00018289	2.6599	0.0013972	2.3118	0.0012143	525.2610163574823	105.62	1.3247	105.62	105.3	106.62	0					51	25	3	0	0	0	0.35581	1	38683	38683		26.884	3.7352	1	2047200			12544	7960	9052	9123	12228	12228					-0.01462259893173723
ESENIPFTL	9	Unmodified	_ESENIPFTL_					0	0	0		ENSG00000175445|ENST00000650287|LPL	ENSG00000175445|ENST00000650287|LPL	ENSG00000175445|ENST00000650287|LPL	MULTI-MSMS	A375_MHC_IP_R2	2	525.1683959960938	2	525.261122	1048.50769	-0.43626	-0.00022915	-0.54461	-0.00028606	-0.98087	-0.00051521	525.2608696746125	104.92	1.2714	105.69	105.26	106.53	0.76308					37	24	2	0	0	0	0.58047	1	39561	39561		15.847	3.3156	1	2681100			12545	7960	9052	9123	12229	12229					-0.01462259893173723
ESENVVCHFY	10	Carbamidomethyl (C)	_ESENVVC(Carbamidomethyl (C))HFY_	ESENVVC(1)HFY		ESENVVC(130)HFY		0	1	0		ENST00000463385.5_1_2:99938416-99949470:-|nuORF;nc|ENSG00000115514|O14530-2|TXNDC9;ENSG00000115514|ENST00000264255|TXNDC9	ENST00000463385.5_1_2:99938416-99949470:-|nuORF	ENST00000463385.5_1_2:99938416-99949470:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	642.6712646484375	2	642.271695	1282.52884	-0.54916	-0.00035271	0.041161	2.6436E-05	-0.508	-0.00032627	642.2716856925678	57.847	0.60905	57.847	57.568	58.177	0					26	11	4	0	0	0	0.0055942	1	20753	20753		134.3	99.364	1	5165300			12546	3315	9053	9124	12230	12230	25				-0.10112617855975259
ESENVVCHFY	10	Carbamidomethyl (C)	_ESENVVC(Carbamidomethyl (C))HFY_	ESENVVC(1)HFY		ESENVVC(130)HFY		0	1	0		ENST00000463385.5_1_2:99938416-99949470:-|nuORF;nc|ENSG00000115514|O14530-2|TXNDC9;ENSG00000115514|ENST00000264255|TXNDC9	ENST00000463385.5_1_2:99938416-99949470:-|nuORF	ENST00000463385.5_1_2:99938416-99949470:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	642.6707763671875	2	642.271695	1282.52884	-1.1177	-0.00071786	0.044202	2.839E-05	-1.0735	-0.00068947	642.2718999213565	57.186	0.61147	57.936	57.51	58.121	0.75014					23	11	3	0	0	0	0.011719	1	21577	21577		134.3	100.85	1	4414800			12547	3315	9053	9124	12231	12231	25				-0.10112617855975259
ESENVVCHFY	10	Unmodified	_ESENVVCHFY_					0	0	0		ENST00000463385.5_1_2:99938416-99949470:-|nuORF;nc|ENSG00000115514|O14530-2|TXNDC9;ENSG00000115514|ENST00000264255|TXNDC9	ENST00000463385.5_1_2:99938416-99949470:-|nuORF	ENST00000463385.5_1_2:99938416-99949470:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	614.1607055664062	2	613.760963	1225.50737	-0.58357	-0.00035817	0.11746	7.2094E-05	-0.4661	-0.00028608	613.7610046717053	66.789	0.76727	66.789	66.478	67.245	0					21	14	2	0	0	0	0.11068	1	24258	24258		61.357	48.315	1	1002500			12548	3315	9053	9125	12232	12232					-0.09636002884690242
ESENVVCHFY	10	Unmodified	_ESENVVCHFY_					0	0	0		ENST00000463385.5_1_2:99938416-99949470:-|nuORF;nc|ENSG00000115514|O14530-2|TXNDC9;ENSG00000115514|ENST00000264255|TXNDC9	ENST00000463385.5_1_2:99938416-99949470:-|nuORF	ENST00000463385.5_1_2:99938416-99949470:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	613.364990234375	2	613.760963	1225.50737	-0.75646	-0.00046428	-1.0936	-0.00067122	-1.8501	-0.0011355	613.7608316333983	65.903	0.76648	66.641	66.526	67.292	0.73811					18	14	2	0	0	0	0.43292	1	25052	25052		48.346	37.522	1	1504800			12549	3315	9053	9125	12233	12233					-0.09636002884690242
ESEPESSE	8	Unmodified	_ESEPESSE_					0	0	0		ENSG00000182329|ENST00000498697|KIAA2012;nc|ENSG00000182329|Q0VF49|KIAA2012	ENSG00000182329|ENST00000498697|KIAA2012	ENSG00000182329|ENST00000498697|KIAA2012	MULTI-MSMS	A375_MHC_IP_R1	1	447.5727233886719	2	447.17217	892.329786	-0.24094	-0.00010774	0.36158	0.00016169	0.12064	5.3948E-05	447.1727619293903	65.973	1.2723	65.973	65.156	66.428	0					43	24	3	0	0	0	0.77717	1	23921	23921		5.2307	0	1	1944400			12550	8399	9054	9126	12234	12234					-0.12068554883023808
ESEPVNSRF	9	Unmodified	_ESEPVNSRF_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1852416992188	2	532.753995	1063.49344	-0.18311	-9.7551E-05	0.78936	0.00042054	0.60625	0.00032298	533.2553932434895	44.63	0.6104	44.63	44.318	44.928	0					27	11	4	0	0	0	0.69507	1	15458	15458		19.257	5.3509	1	2043800			12551	9009	9055	9127	12235	12235					-0.03576912321477721
ESEQSLYK	8	Unmodified	_ESEQSLYK_					0	0	0			REV__CON__Q0VBK2	REV__CON__Q0VBK2	MULTI-MSMS	A375_MHC_IP_R1	1	492.7013854980469	2	492.237647	982.460741	-0.34717	-0.00017089	0.067156	3.3057E-05	-0.28002	-0.00013783	492.2376119387535	64.137	0.91389	64.137	63.735	64.649	0					37	17	3	0	0	0	0.77624	1	23049	23049		8.5933	0.68312	1	6303700	+	+	12552	15869	9056	9128	12236	12236					-0.03119119444329499
ESERDDVFS	9	Unmodified	_ESERDDVFS_					0	0	0		ENSG00000130997|ENST00000511885|POLN;ENST00000514858.5_1_4:2082849-2194957:-|nuORF	ENSG00000130997|ENST00000511885|POLN	ENSG00000130997|ENST00000511885|POLN	MULTI-SECPEP	A375_MHC_IP_R2	2	541.692138671875	2	542.233093	1082.45163	-0.83007	-0.00045009	-1.1701	-0.00063448	-2.0002	-0.0010846	542.2326043530331	77.044	0.70679	77.787	77.303	78.01	0.74293					15	13	2	0	0	0	0.74412	1	29269	29269		10.074	5.3179	1	2039000			12553	4298	9057	9129	12237	12237					-0.08629512800644079
ESERLLRELY	10	Unmodified	_ESERLLRELY_					0	0	0		nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;nc|ENSG00000070669|P08243-3|ASNS	nc|ENSG00000070669|P08243-2|ASNS	nc|ENSG00000070669|P08243-2|ASNS	MULTI-MSMS	A375_MHC_IP_R1	1	437.3041076660156	3	436.569981	1306.68811	-0.18492	-8.0731E-05	-0.0088444	-3.8612E-06	-0.19377	-8.4593E-05	436.5699886430934	59.067	0.86472	59.067	58.786	59.651	0					62	16	5	0	0	0	0.021084	1	21198	21198		84.738	55.457	1	64139000			12554	1496	9058	9130	12238	12238					0.047038387636803236
ESERLLRELY	10	Unmodified	_ESERLLRELY_					0	0	0		nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;nc|ENSG00000070669|P08243-3|ASNS	nc|ENSG00000070669|P08243-2|ASNS	nc|ENSG00000070669|P08243-2|ASNS	MULTI-MSMS	A375_MHC_IP_R2	2	436.9696350097656	3	436.569981	1306.68811	-0.57524	-0.00025113	-0.021621	-9.4392E-06	-0.59686	-0.00026057	436.5699863998573	58.256	1.2675	59.005	58.528	59.795	0.74894					73	24	5	0	0	0	0.010122	1	21963	21963		92.409	64.176	1	59590000			12555	1496	9058	9130	12239	12239					0.047038387636803236
ESERLLRELY	10	Unmodified	_ESERLLRELY_					0	0	0		nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;nc|ENSG00000070669|P08243-3|ASNS	nc|ENSG00000070669|P08243-2|ASNS	nc|ENSG00000070669|P08243-2|ASNS	MULTI-SECPEP	A375_MHC_IP_R2	2	654.7503051757812	2	654.351334	1306.68811	-1.122	-0.0007342	0.26144	0.00017108	-0.86059	-0.00056313	654.3514725081803	58.25	0.65865	58.999	58.629	59.287	0.74894					36	12	4	0	0	0	0.38298	1	21982	21982		59.013	28.309	1	14306000			12556	1496	9058	9130	12240	12240					0.047038387636803236
ESERLLRELY	10	Unmodified	_ESERLLRELY_					0	0	0		nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;nc|ENSG00000070669|P08243-3|ASNS	nc|ENSG00000070669|P08243-2|ASNS	nc|ENSG00000070669|P08243-2|ASNS	MULTI-MATCH	A375_MHC_IP_R1	1		2	654.351334	1306.68811	-0.45709	-0.0002991	-0.040399	-2.6435E-05	-0.49749	-0.00032553	654.3512822077754	59.094	0.66233	59.094	58.836	59.498	0	0.047093	-0.00017616	NaN	89.609	37	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17711000			12557	1496	9058	9130							0.047038387636803236
ESERNTYAR	9	Unmodified	_ESERNTYAR_					0	0	0			REV__SLC24A3|p.G367R|1|0.24|ENSG00000185052|chr20:19685136-19685136|G/A|missense_variant	REV__SLC24A3|p.G367R|1|0.24|ENSG00000185052|chr20:19685136-19685136|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	563.176513671875	2	563.267801	1124.52105	-0.72415	-0.00040789	0.18156	0.00010226	-0.54259	-0.00030562	563.2679435315555	50.149	0.81358	50.903	50.599	51.412	0.75406					32	15	3	0	0	0	0.32899	1	18756	18756		28.487	0	1	4899300	+		12558	27980	9059	9131	12241	12241					-0.03623009061243465
ESERRTIKGFY	11	Unmodified	_ESERRTIKGFY_					0	0	0			REV__ENSG00000197122|ENST00000373578|SRC	REV__ENSG00000197122|ENST00000373578|SRC	MULTI-MSMS	A375_MHC_IP_R1	1	462.95660400390625	3	462.577247	1384.70991	-0.49795	-0.00023034	0.055105	2.549E-05	-0.44284	-0.00020485	462.5771594978185	23.813	0.456	23.813	23.687	24.143	0					10	8	2	0	0	0	0.73318	1	6738	6738		5.8681	0.6697	1	6517000	+		12559	22257	9060	9132	12242	12242					0.0329464351225397
ESESELEEES	10	Unmodified	_ESESELEEES_					0	0	0		DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant;ENSG00000150990|ENST00000308736|DHX37	DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant	DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	389.54742431640625	3	389.822701	1166.44627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.995	1	18.995	18.495	19.495	0								0	0	0	0.15642	1	4568	4568		0	0	1				12560	741	9061	9133	12243	12243					-0.13029281173771778
ESESESESDF	10	Unmodified	_ESESESESDF_					0	0	0			REV__ENSG00000188976|ENST00000327044|NOC2L	REV__ENSG00000188976|ENST00000327044|NOC2L	MULTI-SECPEP	A375_MHC_IP_R1	1	573.6098022460938	2	573.20948	1144.40441	-0.48563	-0.00027837	1.1089	0.00063563	0.62327	0.00035726	573.210143101471	30.846	0.55669	30.846	30.603	31.16	0					21	10	3	0	0	0	0.93799	1	9835	9835		3.5965	0	1	2297300	+		12561	22128	9062	9134	12244	12244					-0.1620183686229666
ESESGTENDQD	11	Unmodified	_ESESGTENDQD_					0	0	0		ENSG00000198331|ENST00000425380|HYLS1	ENSG00000198331|ENST00000425380|HYLS1	ENSG00000198331|ENST00000425380|HYLS1	MSMS	A375_MHC_IP_R2	2	605.6347045898438	2	605.720743	1209.42693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.623	1	72.357	71.857	72.857	0.73421								0	0	0	0.16187	1	27173	27173		8.9762	4.0792	1				12562	9256	9063	9135	12245	12245					-0.16940237464700658
ESETGDQDYY	10	Unmodified	_ESETGDQDYY_					0	0	0		nc|ENSG00000078549|P41586-5|ADCYAP1R1;nc|ENSG00000078549|P41586-3|ADCYAP1R1;ENSG00000078549|ENST00000304166|ADCYAP1R1;nc|ENSG00000078549|P41586-4|ADCYAP1R1;nc|ENSG00000078549|P41586-2|ADCYAP1R1	nc|ENSG00000078549|P41586-5|ADCYAP1R1	nc|ENSG00000078549|P41586-5|ADCYAP1R1	MSMS	A375_MHC_IP_R2	2	603.6851196289062	2	603.725298	1205.43604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.987	1	91.721	91.221	92.221	0.7345								0	0	0	0.15158	1	34620	34620		14.838	5.4551	1				12563	1674	9064	9136	12246	12246					-0.15845844108343954
ESEYHYEYTA	10	Unmodified	_ESEYHYEYTA_					0	0	0		nc|ENSG00000116299|Q6UXG2-3|ELAPOR1;nc|ENSG00000116299|Q6UXG2-2|ELAPOR1;nc|ENSG00000116299|Q6UXG2-4|ELAPOR1;ENSG00000116299|ENST00000369939|ELAPOR1	nc|ENSG00000116299|Q6UXG2-3|ELAPOR1	nc|ENSG00000116299|Q6UXG2-3|ELAPOR1	MSMS	A375_MHC_IP_R2	2	646.263916015625	2	646.259308	1290.50406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.722	1	88.454	87.954	88.954	0.7318								0	0	0	0.15531	1	33369	33369		3.5965	0	1				12564	3394	9065	9137	12247	12247					-0.12956974457688375
ESFAASFPSP	10	Unmodified	_ESFAASFPSP_					0	0	0			REV__NEK9|p.L831F|1|0.34|ENSG00000119638|chr14:75088593-75088593|G/A|missense_variant	REV__NEK9|p.L831F|1|0.34|ENSG00000119638|chr14:75088593-75088593|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	521.6661376953125	2	520.24019	1038.46583	-0.34172	-0.00017778	-1.7441	-0.00090735	-2.0858	-0.0010851	520.2396487007703	78.492	0.80974	78.492	78.15	78.96	0					37	15	4	0	0	0	0.63639	1	28709	28709		18.146	7.3224	1	9011000	+		12565	27592	9066	9138	12248	12248					-0.051868155817146544
ESFAVYEEE	9	Unmodified	_ESFAVYEEE_					0	0	0			REV__DNAH9|p.S4145Ffs*44|1|0.38|ENSG00000007174|chr17:11934016-11934016|C/-|frameshift_variant	REV__DNAH9|p.S4145Ffs*44|1|0.38|ENSG00000007174|chr17:11934016-11934016|C/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	551.67578125	2	551.732394	1101.45024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.445	1	85.445	84.945	85.945	0								0	0	0	0.15486	1	31314	31314		7.9102	0	1		+		12566	16019	9067	9139	12249	12249					-0.09643146889402487
ESFEDGLKY	9	Unmodified	_ESFEDGLKY_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-SECPEP	A375_MHC_IP_R1	1	544.6505737304688	2	544.250754	1086.48696	-0.60853	-0.00033119	0.86869	0.00047279	0.26016	0.00014159	544.2509454074993	59.004	0.55988	59.004	58.786	59.346	0					22	10	3	0	0	0	0.34746	1	21246	21246		38.176	12.776	1	2529900			12567	5209	9068	9140	12250	12250					-0.05282850272851647
ESFEFQIN	8	Unmodified	_ESFEFQIN_					0	0	0		nc|ENSG00000154822|Q9UPR0-3|PLCL2;ENSG00000154822|ENST00000615277|PLCL2;PLCL2|p.P822L|1|0.42|ENSG00000154822|chr3:17011811-17011811|C/T|missense_variant;nc|ENSG00000154822|Q9UPR0-2|PLCL2	nc|ENSG00000154822|Q9UPR0-3|PLCL2	nc|ENSG00000154822|Q9UPR0-3|PLCL2	MULTI-MSMS	A375_MHC_IP_R1	1	507.7136535644531	2	507.232364	1012.45018	-0.41362	-0.0002098	0.0062574	3.174E-06	-0.40736	-0.00020663	507.23230465001484	77.411	1.3241	77.411	76.622	77.946	0					58	25	3	0	0	0	0.75322	1	28418	28418		19.439	1.304	1	6863400			12568	6111	9069	9141	12251	12251					-0.055551020987536504
ESFEGYNGSN	10	Unmodified	_ESFEGYNGSN_					0	0	0			REV__nc|ENSG00000112964|P10912-4|GHR	REV__nc|ENSG00000112964|P10912-4|GHR	MULTI-SECPEP	A375_MHC_IP_R2	2	552.6446533203125	2	552.217443	1102.42033	-0.85767	-0.00047362	-0.052091	-2.8766E-05	-0.90977	-0.00050239	552.2170892428763	39.375	0.66124	40.149	39.863	40.524	0.77451					17	12	2	0	0	0	0.93799	1	14582	14582		1.4819	1.4819	1	1906500	+		12569	17761	9070	9142	12252	12252					-0.12678085834727426
ESFGNEIYT	9	Unmodified	_ESFGNEIYT_					0	0	0		ENSG00000101654|ENST00000383314|RNMT;nc|ENSG00000101654|O43148-2|RNMT;ENST00000588417.1_1_18:13741685-13742652:+|nuORF	ENSG00000101654|ENST00000383314|RNMT	ENSG00000101654|ENST00000383314|RNMT	MULTI-MSMS	A375_MHC_IP_R2	2	530.1972045898438	2	530.235104	1058.45566	-0.66909	-0.00035477	0.20463	0.0001085	-0.46445	-0.00024627	530.2349709151763	72.83	0.76317	73.566	73.073	73.836	0.73541					23	14	2	0	0	0	0.58047	1	27705	27705		15.847	4.2069	1	2231900			12570	2317	9071	9143	12253	12253					-0.07123423306939003
ESFHPPPP	8	Unmodified	_ESFHPPPP_					0	0	0			REV__ENSG00000164900|ENST00000297537|GBX1	REV__ENSG00000164900|ENST00000297537|GBX1	MSMS	A375_MHC_IP_R2	2	454.249267578125	2	454.21906	906.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.396	1	59.145	58.645	59.645	0.74894								0	0	0	0.16876	1	22095	22095		22.453	6.6844	1		+		12571	20524	9072	9144	12254	12254					-0.03338746199426623
ESFIDKLQEET	11	Unmodified	_ESFIDKLQEET_					0	0	0			REV__nc|ENSG00000101811|P33240-2|CSTF2	REV__nc|ENSG00000101811|P33240-2|CSTF2	MULTI-MSMS	A375_MHC_IP_R2	2	670.7726440429688	2	669.824815	1337.63508	-0.66264	-0.00044386	0.91316	0.00061165	0.25051	0.0001678	669.8252394750758	68.771	0.96236	69.506	69.221	70.184	0.73511					31	18	3	0	0	0	0.72583	1	26055	26055		12.873	0.63195	1	8481000	+		12572	17185	9073	9145	12255	12255					-0.020235838096596126
ESFIDKLQEET	11	Unmodified	_ESFIDKLQEET_					0	0	0			REV__nc|ENSG00000101811|P33240-2|CSTF2	REV__nc|ENSG00000101811|P33240-2|CSTF2	MULTI-SECPEP	A375_MHC_IP_R2	2	670.22509765625	2	669.824815	1337.63508	-0.66264	-0.00044386	0.91316	0.00061165	0.25051	0.0001678	669.8252394750758	68.771	0.96236	69.506	69.221	70.184	0.73511					31	18	3	0	0	0	0.75073	1	26041	26041		37.075	24.9	1	8481000	+		12573	17185	9073	9145	12256	12256					-0.020235838096596126
ESFIDKLQEET	11	Unmodified	_ESFIDKLQEET_					0	0	0			REV__nc|ENSG00000101811|P33240-2|CSTF2	REV__nc|ENSG00000101811|P33240-2|CSTF2	MULTI-MATCH	A375_MHC_IP_R1	1		2	669.824815	1337.63508	-0.092708	-6.2098E-05	0.63228	0.00042352	0.53958	0.00036142	669.8251765487015	69.374	0.56017	69.374	69.121	69.681	0	-0.065959	-0.00015244	NaN	37.075	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7160000	+		12574	17185	9073	9145							-0.020235838096596126
ESFISMSETI	10	Unmodified	_ESFISMSETI_					0	0	0		ZBTB14|p.F3S|1|0.29|ENSG00000198081|chr18:5292200-5292200|A/G|missense_variant	ZBTB14|p.F3S|1|0.29|ENSG00000198081|chr18:5292200-5292200|A/G|missense_variant	ZBTB14|p.F3S|1|0.29|ENSG00000198081|chr18:5292200-5292200|A/G|missense_variant	MSMS	A375_MHC_IP_R1	1	572.18994140625	2	572.265547	1142.51654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.456	1	59.456	58.956	59.956	0								0	0	0	0.15158	1	21387	21387		14.838	2.3067	1				12575	30183	9074	9146	12257	12257					-0.04901654319019144
ESFKFVRLF	9	Unmodified	_ESFKFVRLF_					0	0	0		ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	MULTI-MSMS	A375_MHC_IP_R1	1	391.95379638671875	3	391.553603	1171.63898	0.042483	1.6634E-05	0.41637	0.00016303	0.45886	0.00017967	391.5537370478413	95.32	0.50809	95.32	95.007	95.515	0					17	9	2	0	0	0	0.41409	3	35025	35025;35045;35062		20.415	17.095	1	3215800			12576	2988	9075	9147	12258;12259;12260	12258					0.060025952653631975
ESFKFVRLF	9	Unmodified	_ESFKFVRLF_					0	0	0		ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	MULTI-MSMS	A375_MHC_IP_R2	2	391.6252136230469	3	391.553603	1171.63898	0.03387	1.3262E-05	0.24937	9.7643E-05	0.28324	0.00011091	391.5536627207594	94.385	0.50629	95.13	94.818	95.324	0.74474					16	9	2	0	0	0	0.73415	1	35914	35914		2.2828	1.2692	1	3336200			12577	2988	9075	9147	12261	12261					0.060025952653631975
ESFKGKILF	9	Unmodified	_ESFKGKILF_					0	0	0		ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	MULTI-SECPEP	A375_MHC_IP_R2	2	535.2073364257812	2	534.808042	1067.60153	-1.079	-0.00057703	0.023513	1.2575E-05	-1.0554	-0.00056446	534.8080113383439	57.854	0.55378	58.603	58.375	58.929	0.74894					18	10	3	0	0	0	0.40377	1	21906	21906		24.021	2.2739	1	2094200			12578	8679	9076	9148	12262	12262					0.07043503999761924
ESFKKNKAF	9	Unmodified	_ESFKKNKAF_					0	0	0		tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	550.3466796875	2	549.800749	1097.58694	-0.83356	-0.00045829	-0.13882	-7.6324E-05	-0.97239	-0.00053462	549.8005181157374	40.047	0.35493	40.821	40.676	41.031	0.77451					9	6	2	0	0	0	0.55471	1	14775	14775		17.113	1.2657	1	1783600			12579	29749	9077	9149	12263	12263					0.04205431851596586
ESFKKVWLNMR	11	Unmodified	_ESFKKVWLNMR_					0	0	0			REV__ENSG00000283528|ENST00000636941|TCAF2C	REV__ENSG00000283528|ENST00000636941|TCAF2C	MSMS	A375_MHC_IP_R2	2	719.3124389648438	2	719.387197	1436.75984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.117	1	80.862	80.362	81.362	0.74474								0	0	0	0.16164	1	30414	30414		10.151	4.4187	1		+		12580	20987	9078	9150	12264	12264					0.05893054916532492
ESFKNKKY	8	Unmodified	_ESFKNKKY_					0	0	0		ZNF804B|p.E794K|1|0.35|ENSG00000182348|chr7:89335362-89335362|G/A|missense_variant	ZNF804B|p.E794K|1|0.35|ENSG00000182348|chr7:89335362-89335362|G/A|missense_variant	ZNF804B|p.E794K|1|0.35|ENSG00000182348|chr7:89335362-89335362|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	521.9669799804688	2	522.279649	1042.54475	-0.024195	-1.2637E-05	1.8905	0.00098739	1.8663	0.00097475	522.2803766075311	48.934	1.0106	48.934	48.325	49.336	0					22	19	2	0	0	0	0.94479	1	17105	17105		4.756	0	1	1534700			12581	30248	9079	9151	12265	12265					0.025174564432290936
ESFLDSNDELY	11	Unmodified	_ESFLDSNDELY_					0	0	0			REV__nc|ENSG00000146147|Q5VWP3-2|MLIP	REV__nc|ENSG00000146147|Q5VWP3-2|MLIP	MSMS	A375_MHC_IP_R2	2	666.1387329101562	2	666.285522	1330.55649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.787	1	58.536	58.036	59.036	0.74894								0	0	0	0.16108	1	21853	21853		13.042	0	1		+		12582	19519	9080	9152	12266	12266					-0.09556436114735334
ESFLGKSF	8	Unmodified	_ESFLGKSF_					0	0	0			REV__ENST00000532312.2_1_11:118995018-118995186:+|nuORF	REV__ENST00000532312.2_1_11:118995018-118995186:+|nuORF	MSMS	A375_MHC_IP_R1	1	457.68218994140625	2	457.734543	913.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.379	1	44.379	43.879	44.879	0								0	0	0	0.16876	1	15481	15481		25.399	0.72543	1		+		12583	25865	9081	9153	12267	12267					-0.00565592885186561
ESFLHPYMKE	10	Unmodified	_ESFLHPYMKE_					0	0	0			REV__nc|ENSG00000177640|Q6XLA1|CASC2	REV__nc|ENSG00000177640|Q6XLA1|CASC2	MULTI-MSMS	A375_MHC_IP_R1	1	641.701171875	2	640.802631	1279.59071	-0.61078	-0.00039139	-2.6116	-0.0016735	-3.2224	-0.0020649	641.8054634027942	75.929	0.55465	75.929	75.614	76.168	0					27	10	4	0	0	0	0.62015	1	27691	27691		19.362	3.2128	1	3697800	+		12584	27377	9082	9154	12268	12268					-0.03790266436863021
ESFLLFFSL	9	Unmodified	_ESFLLFFSL_					0	0	0			REV__tr|U7SX00|U7SX00_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01231PE=4SV=1	REV__tr|U7SX00|U7SX00_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01231PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	551.1661987304688	2	551.794601	1101.57465	-0.29018	-0.00016012	1.8328	0.0010113	1.5426	0.00085122	552.2968269445059	38.749	0.40734	38.749	38.475	38.882	0					9	7	2	0	0	0	0.62767	1	13213	13213		16.942	9.0321	1	2273300	+		12585	28616	9083	9155	12269	12269					0.027923953885874653
ESFNAIPTF	9	Unmodified	_ESFNAIPTF_					0	0	0		ENSG00000154734|ENST00000284984|ADAMTS1	ENSG00000154734|ENST00000284984|ADAMTS1	ENSG00000154734|ENST00000284984|ADAMTS1	MULTI-MSMS	A375_MHC_IP_R1	1	513.7437744140625	2	513.250557	1024.48656	-0.37322	-0.00019155	-0.10898	-5.5936E-05	-0.4822	-0.00024749	513.2506149729642	56.269	0.65789	56.269	55.941	56.599	0					20	12	2	0	0	0	0.63811	1	20033	20033		12.532	0	1	5244800			12586	6103	9084	9156	12270	12270					-0.02470225202068832
ESFNCYCI	8	Unmodified	_ESFNCYCI_					0	0	0			REV__ENSG00000164106|ENST00000296506|SCRG1	REV__ENSG00000164106|ENST00000296506|SCRG1	MSMS	A375_MHC_IP_R1	1	489.6227722167969	2	489.688421	977.362289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.384	1	82.384	81.884	82.884	0								0	0	0	0.16876	1	30128	30128		10.183	0.83596	1		+		12587	20451	9085	9157	12271	12271					-0.12729762285391644
ESFNCYCI	8	Unmodified	_ESFNCYCI_					0	0	0			REV__ENSG00000164106|ENST00000296506|SCRG1	REV__ENSG00000164106|ENST00000296506|SCRG1	MSMS	A375_MHC_IP_R2	2	489.622802734375	2	489.688421	977.362289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.603	1	82.346	81.846	82.846	0.74293								0	0	0	0.16876	1	30993	30993		10.183	0.83596	1		+		12588	20451	9085	9157	12272	12272					-0.12729762285391644
ESFNPVESYV	10	Unmodified	_ESFNPVESYV_					0	0	0			REV__ENST00000462824.1_1_2:192548461-192549679:+|nuORF	REV__ENST00000462824.1_1_2:192548461-192549679:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	585.184814453125	2	585.769311	1169.52407	-0.26609	-0.00015587	-3.999	-0.0023425	-4.2651	-0.0024984	585.768168308774	73.605	0.50641	73.605	73.285	73.792	0					12	9	2	0	0	0	0.91328	1	26872	26872		17.443	8.0595	1	857020	+		12589	19165	9086	9158	12273	12273					-0.05391178727086299
ESFQCDYY	8	Unmodified	_ESFQCDYY_					0	0	0			REV__ENST00000403865.2_1_13:42644035-42644281:-|nuORF	REV__ENST00000403865.2_1_13:42644035-42644281:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	528.0933837890625	2	527.694758	1053.37496	-0.52302	-0.00027599	-1.8933	-0.00099909	-2.4163	-0.0012751	527.6941621182593	61.571	0.56042	61.571	61.331	61.891	0					20	9	3	0	0	0	0.74466	2	22213	22213;22223		21.747	6.9084	1	5479500	+		12590	24421	9087	9159	12274;12275	12274					-0.14959027621512178
ESFQEKRDF	9	Unmodified	_ESFQEKRDF_					0	0	0			REV__ENSG00000165494|ENST00000690938|PCF11	REV__ENSG00000165494|ENST00000690938|PCF11	MULTI-SECPEP	A375_MHC_IP_R2	2	593.6804809570312	2	593.280377	1184.5462	-0.42697	-0.00025331	0.34554	0.000205	-0.08143	-4.8311E-05	593.2803973063204	43.281	1.1117	44.054	43.523	44.634	0.7724					36	21	3	0	0	0	0.78351	1	15955	15955		2.0598	0	1	10071000	+		12591	20587	9088	9160	12276	12276					-0.03868954258678059
ESFQFMEMA	9	Unmodified	_ESFQFMEMA_					0	0	0			REV__ENSG00000246922|ENST00000559089|UBAP1L	REV__ENSG00000246922|ENST00000559089|UBAP1L	MSMS	A375_MHC_IP_R2	2	560.1592407226562	2	560.22791	1118.44127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.601	1	93.34	92.84	93.84	0.73902								0	0	0	0.15486	1	35214	35214		4.756	0.42677	1		+		12592	22829	9089	9161	12277	12277					-0.11321535051092724
ESFQPWEIP	9	Unmodified	_ESFQPWEIP_					0	0	0		nc|ENSG00000188659|Q658L1|SAXO2;nc|ENSG00000188659|Q658L1-2|SAXO2;ENSG00000188659|ENST00000682753|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	MULTI-MSMS	A375_MHC_IP_R1	1	566.64404296875	2	566.769114	1131.52368	-0.63201	-0.00035821	0.48284	0.00027366	-0.14918	-8.4549E-05	566.7695059792668	66.988	2.0349	66.988	66.022	68.057	0					81	39	4	0	0	0	0.41409	1	24197	24197		24.021	3.606	1	7874100			12593	14825	9090	9162	12278	12278					-0.03682553656290111
ESFQPWEIP	9	Unmodified	_ESFQPWEIP_					0	0	0		nc|ENSG00000188659|Q658L1|SAXO2;nc|ENSG00000188659|Q658L1-2|SAXO2;ENSG00000188659|ENST00000682753|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	566.769114	1131.52368	-0.63201	-0.00035821	0.48284	0.00027366	-0.14918	-8.4549E-05	566.7695059792668	66.988	2.0349	66.988	66.022	68.057	0	0.0018307	0.00028321	NaN	24.021	81	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7874100			12594	14825	9090	9162							-0.03682553656290111
ESFQPWEIP	9	Unmodified	_ESFQPWEIP_					0	0	0		nc|ENSG00000188659|Q658L1|SAXO2;nc|ENSG00000188659|Q658L1-2|SAXO2;ENSG00000188659|ENST00000682753|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	MULTI-MATCH	A375_MHC_IP_R2	2		2	566.769114	1131.52368	-0.55871	-0.00031666	-0.016562	-9.3866E-06	-0.57528	-0.00032605	566.7690043327686	66.247	1.1714	66.984	66.171	67.342	0.73723	-0.0018307	-0.00028288	NaN	24.021	68	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6892600			12595	14825	9090	9162							-0.03682553656290111
ESFQRTEYS	9	Unmodified	_ESFQRTEYS_					0	0	0		ENST00000433352.1_1_X:64550801-64551062:-|nuORF	ENST00000433352.1_1_X:64550801-64551062:-|nuORF	ENST00000433352.1_1_X:64550801-64551062:-|nuORF	MSMS	A375_MHC_IP_R1	1	573.7130126953125	2	573.756735	1145.49892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.031	1	76.031	75.531	76.531	0								0	0	0	0.15486	1	27707	27707		13.042	2.2185	1				12596	11892	9091	9163	12279	12279					-0.06801233529654382
ESFRFKFL	8	Unmodified	_ESFRFKFL_					0	0	0			REV__tr|U7SHC1|U7SHC1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02336PE=4SV=1	REV__tr|U7SHC1|U7SHC1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02336PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1558227539062	2	537.292559	1072.57057	-0.94876	-0.00050976	0.51967	0.00027921	-0.42909	-0.00023055	537.7941351029604	45.228	0.2523	45.993	45.846	46.099	0.76519					6	4	2	0	0	0	0.92867	1	16894	16894		7.2892	5.2295	1	979820	+		12597	28207	9092	9164	12280	12280					0.0371835068551718
ESFRKEFGEQ	10	Unmodified	_ESFRKEFGEQ_					0	0	0		ENSG00000115548|ENST00000312912|KDM3A;ENST00000441719.5_1_2:86711112-86716803:+|nuORF	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	MULTI-MSMS	A375_MHC_IP_R2	2	629.1979370117188	2	628.798934	1255.58332	-0.88525	-0.00055664	-0.026199	-1.6474E-05	-0.91144	-0.00057312	628.7989373858893	74.842	0.55801	75.58	75.214	75.772	0.73751					14	10	2	0	0	0	0.70793	1	28440	28440		8.7454	0.58988	1	2127600			12598	3321	9093	9165	12281	12281					-0.0342528271289666
ESFSRFEW	8	Unmodified	_ESFSRFEW_					0	0	0			REV__SAMSN1|p.H15Qfs*19|1|0.42|ENSG00000155307|chr21:14546217-14546218|-/T|frameshift_variant	REV__SAMSN1|p.H15Qfs*19|1|0.42|ENSG00000155307|chr21:14546217-14546218|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	363.6034851074219	3	363.166296	1086.47706	-0.0025328	-9.1982E-07	1.8924	0.00068725	1.8898	0.00068633	363.5023000608142	79.599	0.81123	80.344	79.846	80.657	0.74474					24	15	3	0	0	0	0.972	1	30317	30317		3.5965	0	1	1077300	+		12599	24405	9094	9166	12282	12282					-0.06271993487553118
ESFTYAKVQF	10	Unmodified	_ESFTYAKVQF_					0	0	0			REV__ENST00000470841.1_1_1:161680536-161681272:+|nuORF	REV__ENST00000470841.1_1_1:161680536-161681272:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	407.6048583984375	3	407.20464	1218.59209	0.26683	0.00010865	-0.0097798	-3.9824E-06	0.25705	0.00010467	407.2047880731183	48.958	0.50537	48.958	48.729	49.235	0					20	9	4	0	0	0	0.66857	1	17310	17310		15.739	6.4948	1	1875000	+		12600	15671	9095	9167	12283	12283					-0.008463090764280423
ESFTYAKVQF	10	Unmodified	_ESFTYAKVQF_					0	0	0			REV__ENST00000470841.1_1_1:161680536-161681272:+|nuORF	REV__ENST00000470841.1_1_1:161680536-161681272:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	407.20464	1218.59209	0.26683	0.00010865	-0.0097798	-3.9824E-06	0.25705	0.00010467	407.2047880731183	48.958	0.50537	48.958	48.729	49.235	0	0.051919	6.8023E-05	NaN	15.739	20	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1875000	+		12601	15671	9095	9167							-0.008463090764280423
ESFVHCSCSY	10	Unmodified	_ESFVHCSCSY_					0	0	0			REV__ENSG00000180917|ENST00000434935|CMTR2	REV__ENSG00000180917|ENST00000434935|CMTR2	MULTI-MSMS	A375_MHC_IP_R1	1	581.6204223632812	2	581.220617	1160.42668	-0.15972	-9.2834E-05	0.13224	7.6863E-05	-0.027478	-1.5971E-05	581.2207276023862	72.981	0.9128	72.981	72.474	73.386	0					32	17	3	0	0	0	0.14594	3	26520	26520;26567;26632		54.774	24.137	1	4605900	+		12602	21628	9096	9168	12284;12285;12286	12284					-0.14711607199228638
ESFVHCSCSY	10	Unmodified	_ESFVHCSCSY_					0	0	0			REV__ENSG00000180917|ENST00000434935|CMTR2	REV__ENSG00000180917|ENST00000434935|CMTR2	MULTI-SECPEP	A375_MHC_IP_R1	1	581.6204223632812	2	581.220617	1160.42668	-0.15972	-9.2834E-05	0.13224	7.6863E-05	-0.027478	-1.5971E-05	581.2207276023862	72.981	0.9128	72.981	72.474	73.386	0					32	17	3	0	0	0	0.32951	1	26520	26520		54.774	24.137	1	4605900	+		12603	21628	9096	9168	12287	12287					-0.14711607199228638
ESFVHCSCSY	10	Unmodified	_ESFVHCSCSY_					0	0	0			REV__ENSG00000180917|ENST00000434935|CMTR2	REV__ENSG00000180917|ENST00000434935|CMTR2	MULTI-MSMS	A375_MHC_IP_R2	2	581.1480102539062	2	581.220617	1160.42668	-0.4465	-0.00025951	0.35166	0.00020439	-0.094839	-5.5122E-05	581.2207051772527	72.552	0.65915	73.287	72.922	73.581	0.73541					23	12	2	0	0	0	0.23156	3	27523	27455;27514;27523		46.021	46.021	1	5031200	+		12604	21628	9096	9168	12288;12289;12290	12290					-0.14711607199228638
ESFVHCSCSY	10	Unmodified	_ESFVHCSCSY_					0	0	0			REV__ENSG00000180917|ENST00000434935|CMTR2	REV__ENSG00000180917|ENST00000434935|CMTR2	MULTI-SECPEP	A375_MHC_IP_R2	2	581.1480102539062	2	581.220617	1160.42668	-0.4465	-0.00025951	0.35166	0.00020439	-0.094839	-5.5122E-05	581.2207051772527	72.552	0.65915	73.287	72.922	73.581	0.73541					23	12	2	0	0	0	0.48072	1	27523	27523		46.021	46.021	1	5031200	+		12605	21628	9096	9168	12291	12291					-0.14711607199228638
ESFVQHVVY	9	Unmodified	_ESFVQHVVY_					0	0	0		CFAP43|p.S476F|1|0.33|ENSG00000197748|chr10:104193881-104193881|G/A|missense_variant	CFAP43|p.S476F|1|0.33|ENSG00000197748|chr10:104193881-104193881|G/A|missense_variant	CFAP43|p.S476F|1|0.33|ENSG00000197748|chr10:104193881-104193881|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	554.221435546875	2	554.277106	1106.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.476	1	45.245	44.745	45.745	0.7691								0	0	0	0.15142	1	16600	16600		19.257	3.1079	1				12606	367	9097	9169	12292	12292					-0.009348474193757284
ESFVSAGFASF	11	Unmodified	_ESFVSAGFASF_					0	0	0		ENSG00000182580|ENST00000330394|EPHB3	ENSG00000182580|ENST00000330394|EPHB3	ENSG00000182580|ENST00000330394|EPHB3	MULTI-MSMS	A375_MHC_IP_R1	1	574.7341918945312	2	574.766571	1147.51859	-0.48152	-0.00027676	0.63869	0.0003671	0.15717	9.0339E-05	574.7671167729743	67.077	0.66488	67.077	66.785	67.449	0					27	12	4	0	0	0	0.62292	2	24335	24335;24344		21.537	1.0834	1	1979200			12607	8421	9098	9170	12293;12294	12293					-0.049268575188989416
ESFVSAGFASF	11	Unmodified	_ESFVSAGFASF_					0	0	0		ENSG00000182580|ENST00000330394|EPHB3	ENSG00000182580|ENST00000330394|EPHB3	ENSG00000182580|ENST00000330394|EPHB3	MULTI-MSMS	A375_MHC_IP_R1	1	575.1661987304688	2	574.766571	1147.51859	-0.2242	-0.00012886	-0.21887	-0.0001258	-0.44307	-0.00025466	574.766356318139	75.73	0.75552	75.73	75.413	76.168	0					33	14	3	0	0	0	0.31356	2	27597	27571;27597		45.7	3.7441	1	7466800			12608	8421	9098	9170	12295;12296	12296					-0.049268575188989416
ESFVSAGFASF	11	Unmodified	_ESFVSAGFASF_					0	0	0		ENSG00000182580|ENST00000330394|EPHB3	ENSG00000182580|ENST00000330394|EPHB3	ENSG00000182580|ENST00000330394|EPHB3	MULTI-SECPEP	A375_MHC_IP_R1	1	575.166015625	2	574.766571	1147.51859	-0.10365	-5.9575E-05	-0.51825	-0.00029787	-0.6219	-0.00035745	574.7662844527799	51.251	0.55908	51.251	50.966	51.525	0					21	10	3	0	0	0	0.49142	1	18193	18193		39.95	0	1	3021200			12609	8421	9098	9170	12297	12297					-0.049268575188989416
ESFVSAGFASF	11	Unmodified	_ESFVSAGFASF_					0	0	0		ENSG00000182580|ENST00000330394|EPHB3	ENSG00000182580|ENST00000330394|EPHB3	ENSG00000182580|ENST00000330394|EPHB3	MULTI-SECPEP	A375_MHC_IP_R2	2	574.1587524414062	2	574.766571	1147.51859	-0.26095	-0.00014998	-0.32192	-0.00018503	-0.58287	-0.00033501	574.7661996400326	75.027	0.813	75.764	75.416	76.229	0.73751					31	15	3	0	0	0	0.49142	1	28497	28497		39.95	1.7741	1	7628700			12610	8421	9098	9170	12298	12298					-0.049268575188989416
ESFVSAGFASF	11	Unmodified	_ESFVSAGFASF_					0	0	0		ENSG00000182580|ENST00000330394|EPHB3	ENSG00000182580|ENST00000330394|EPHB3	ENSG00000182580|ENST00000330394|EPHB3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	574.766571	1147.51859	-0.2242	-0.00012886	-0.21887	-0.0001258	-0.44307	-0.00025466	574.766356318139	75.73	0.75552	75.73	75.413	76.168	0	-0.017149	5.1289E-05	NaN	45.7	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7466800			12611	8421	9098	9170							-0.049268575188989416
ESFWWWNRTWW	11	Unmodified	_ESFWWWNRTWW_					0	0	0			REV__ENST00000404295.7_1_16:4519400-4524561:-|nuORF	REV__ENST00000404295.7_1_16:4519400-4524561:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	842.777099609375	2	842.378217	1682.74188	-0.60267	-0.00050767	-0.44058	-0.00037113	-1.0432	-0.00087881	842.3775246662982	68.616	0.35362	69.351	69.121	69.474	0.73511					13	6	3	0	0	0	0.73906	1	26035	26035		0.26902	0.26902	1	1636900	+		12612	24424	9099	9171	12299	12299					-0.07217944013996203
ESFWWWNRTWW	11	Unmodified	_ESFWWWNRTWW_					0	0	0			REV__ENST00000404295.7_1_16:4519400-4524561:-|nuORF	REV__ENST00000404295.7_1_16:4519400-4524561:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	842.378217	1682.74188	-0.60267	-0.00050767	-0.44058	-0.00037113	-1.0432	-0.00087881	842.3775246662982	68.616	0.35362	69.351	69.121	69.474	0.73511	0.035462	-0.00010616	NaN	0.26902	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1636900	+		12613	24424	9099	9171							-0.07217944013996203
ESGFIKSIAAE	11	Unmodified	_ESGFIKSIAAE_					0	0	0			REV__ENST00000579425.5_1_17:7126403-7127239:+|nuORF	REV__ENST00000579425.5_1_17:7126403-7127239:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	384.92779541015625	3	384.536278	1150.587	-0.36399	-0.00013997	0.52452	0.0002017	0.16053	6.1731E-05	384.5364292837759	24.014	0.51006	24.653	24.341	24.851	0.63815					13	9	2	0	0	0	0.73064	1	7892	7892		8.2864	2.0521	1	2260800	+		12614	16610	9100	9172	12300	12300					0.01773387060939058
ESGGALENLY	10	Unmodified	_ESGGALENLY_					0	0	0		chr5:114433893-114463049|128|16.21|0.03|9.33|+|2|TE_info:LTR12C,LTR12C_dup959,ERV1,LTR,donor,+,114432500,114433893|None,KCNN2|3	chr5:114433893-114463049|128|16.21|0.03|9.33|+|2|TE_info:LTR12C,LTR12C_dup959,ERV1,LTR,donor,+,114432500,114433893|None,KCNN2|3	chr5:114433893-114463049|128|16.21|0.03|9.33|+|2|TE_info:LTR12C,LTR12C_dup959,ERV1,LTR,donor,+,114432500,114433893|None,KCNN2|3	MULTI-MSMS	A375_MHC_IP_R2	2	527.1480712890625	2	526.748379	1051.4822	-0.78585	-0.00041395	0.62153	0.00032739	-0.16432	-8.6557E-05	526.7484172295632	58.444	0.56158	59.193	58.98	59.542	0.74894					23	10	4	0	0	0	0.55789	1	22150	22150		24.021	3.5669	1	1806800			12615	480	9101	9173	12301	12301					-0.0414773441559646
ESGGALENLY	10	Unmodified	_ESGGALENLY_					0	0	0		chr5:114433893-114463049|128|16.21|0.03|9.33|+|2|TE_info:LTR12C,LTR12C_dup959,ERV1,LTR,donor,+,114432500,114433893|None,KCNN2|3	chr5:114433893-114463049|128|16.21|0.03|9.33|+|2|TE_info:LTR12C,LTR12C_dup959,ERV1,LTR,donor,+,114432500,114433893|None,KCNN2|3	chr5:114433893-114463049|128|16.21|0.03|9.33|+|2|TE_info:LTR12C,LTR12C_dup959,ERV1,LTR,donor,+,114432500,114433893|None,KCNN2|3	MULTI-MATCH	A375_MHC_IP_R1	1		2	526.748379	1051.4822	-0.5301	-0.00027923	0.01472	7.7538E-06	-0.51538	-0.00027147	526.74810237355	59.097	0.51004	59.097	58.887	59.397	0	-0.047637	-0.0002826	NaN	24.021	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1080100			12616	480	9101	9173							-0.0414773441559646
ESGGISRFRP	10	Unmodified	_ESGGISRFRP_					0	0	0			REV__ENST00000579527.5_1_17:56429730-56430033:+|nuORF	REV__ENST00000579527.5_1_17:56429730-56430033:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	553.1887817382812	2	553.291079	1104.56761	-0.74906	-0.00041445	-0.27333	-0.00015123	-1.0224	-0.00056568	553.2909504484456	84.429	0.4053	84.429	84.191	84.596	0					10	7	2	0	0	0	0.88918	1	30965	30965		8.7454	3.8484	1	1348200	+		12617	26335	9102	9174	12302	12302					0.019504755606931212
ESGKYPCGES	10	Unmodified	_ESGKYPCGES_					0	0	0		ENSG00000189132|ENST00000329357|FAM47B	ENSG00000189132|ENST00000329357|FAM47B	ENSG00000189132|ENST00000329357|FAM47B	MULTI-MSMS	A375_MHC_IP_R1	1	528.7139282226562	2	528.718764	1055.42298	-0.74867	-0.00039583	-0.83827	-0.00044321	-1.5869	-0.00083904	528.7183510517472	91.071	0.96484	91.071	90.539	91.503	0					47	18	3	0	0	0	0.70496	1	33356	33356		10.074	0.72649	1	3258100			12618	8963	9103	9175	12303	12303					-0.1025195370145866
ESGNYFESEY	10	Unmodified	_ESGNYFESEY_					0	0	0		tr|U7SYR5|U7SYR5_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00888PE=3SV=1	tr|U7SYR5|U7SYR5_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00888PE=3SV=1	tr|U7SYR5|U7SYR5_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00888PE=3SV=1	MSMS	A375_MHC_IP_R1	1	612.6980590820312	2	612.738208	1223.46186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.01	1	106.01	105.51	106.51	0								0	0	0	0.15435	1	38917	38917		6.7232	0.51738	1				12619	29842	9104	9176	12304	12304					-0.14092949866062554
ESGPSRPTF	9	Unmodified	_ESGPSRPTF_					0	0	0			REV__ENSG00000130487|ENST00000648057|KLHDC7B	REV__ENSG00000130487|ENST00000648057|KLHDC7B	MSMS	A375_MHC_IP_R1	1	489.1579895019531	2	489.237981	976.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.64	1	30.64	30.14	31.14	0								0	0	0	0.14677	1	9756	9756		26.884	3.7352	1		+		12620	18542	9105	9177	12305	12305					-0.02776280004616183
ESGPSRPTF	9	Unmodified	_ESGPSRPTF_					0	0	0			REV__ENSG00000130487|ENST00000648057|KLHDC7B	REV__ENSG00000130487|ENST00000648057|KLHDC7B	MSMS	A375_MHC_IP_R2	2	489.1579895019531	2	489.237981	976.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.886	1	30.585	30.085	31.085	0.69872								0	0	0	0.14677	1	10470	10470		26.884	3.7352	1		+		12621	18542	9105	9177	12306	12306					-0.02776280004616183
ESGQGDLSGWH	11	Unmodified	_ESGQGDLSGWH_					0	0	0			REV__ENST00000518231.1_1_8:86376310-86386082:+|nuORF	REV__ENST00000518231.1_1_8:86376310-86386082:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	587.150146484375	2	586.751984	1171.48942	-0.47113	-0.00027644	-2.2509	-0.0013207	-2.722	-0.0015972	586.7507273141998	32.861	0.40511	32.861	32.634	33.04	0					10	7	2	0	0	0	0.49816	1	10677	10677		31.268	5.0002	1	2663700	+		12622	17311	9106	9178	12307	12307					-0.08947001815204203
ESGQSKFSL	9	Unmodified	_ESGQSKFSL_					0	0	0			REV__ENST00000443035.7_1_15:65994691-65994772:-|nuORF	REV__ENST00000443035.7_1_15:65994691-65994772:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	492.14569091796875	2	491.745639	981.476725	-0.18152	-8.9261E-05	-0.18592	-9.1423E-05	-0.36743	-0.00018068	491.7455000863092	43.407	0.5601	43.407	42.993	43.553	0					14	10	2	0	0	0	0.53748	1	15068	15068		18.146	5.6148	1	2198800	+		12623	24825	9107	9179	12308	12308					-0.014754132074131121
ESGQSKFSL	9	Unmodified	_ESGQSKFSL_					0	0	0			REV__ENST00000443035.7_1_15:65994691-65994772:-|nuORF	REV__ENST00000443035.7_1_15:65994691-65994772:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	492.145263671875	2	491.745639	981.476725	-0.46184	-0.00022711	-1.0149	-0.00049907	-1.4767	-0.00072618	491.7453006930926	42.455	0.8158	43.227	42.707	43.523	0.7724					22	15	2	0	0	0	0.24548	1	15835	15835		43.858	7.8141	1	1680400	+		12624	24825	9107	9179	12309	12309					-0.014754132074131121
ESGRRVSRG	9	Unmodified	_ESGRRVSRG_					0	0	0		ENST00000496583.1_1_19:54694282-54694453:+|nuORF	ENST00000496583.1_1_19:54694282-54694453:+|nuORF	ENST00000496583.1_1_19:54694282-54694453:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	502.1710205078125	2	502.273221	1002.53189	-0.66936	-0.0003362	0.37911	0.00019042	-0.29025	-0.00014578	502.27341040225326	40.018	0.30398	40.793	40.626	40.93	0.77451					8	5	2	0	0	0	0.57432	1	14837	14837		16.149	3.1066	1	925750			12625	12729	9108	9180	12310	12310					0.030724381037202875
ESGTELEAW	9	Unmodified	_ESGTELEAW_					0	0	0			REV__ENST00000528623.5_3_19:50183412-50183496:+|nuORF	REV__ENST00000528623.5_3_19:50183412-50183496:+|nuORF	MSMS	A375_MHC_IP_R1	1	511.17730712890625	2	511.227279	1020.44001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.006	1	63.006	62.506	63.506	0								0	0	0	0.15486	1	22765	22765		12.532	0.89125	1		+		12626	25806	9109	9181	12311	12311					-0.06939709823996054
ESGWEMAVLR	10	Unmodified	_ESGWEMAVLR_					0	0	0			REV__ENST00000475005.1_1_9:5812814-5833063:-|nuORF	REV__ENST00000475005.1_1_9:5812814-5833063:-|nuORF	MSMS	A375_MHC_IP_R1	1	589.6419067382812	2	589.287148	1176.55974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.348	1	63.348	62.848	63.848	0								0	0	0	0.15353	1	22895	22895		9.3831	1.2276	1		+		12627	25164	9110	9182	12312	12312					-0.021474197510769955
ESGWKLVHGD	10	Unmodified	_ESGWKLVHGD_					0	0	0		ENSG00000101337|ENST00000398022|TM9SF4	ENSG00000101337|ENST00000398022|TM9SF4	ENSG00000101337|ENST00000398022|TM9SF4	MULTI-SECPEP	A375_MHC_IP_R1	1	376.9292297363281	3	376.520851	1126.54072	0.23222	8.7435E-05	0.29608	0.00011148	0.5283	0.00019892	376.5211601400701	25.554	0.50875	25.554	25.408	25.917	0					15	9	3	0	0	0	0.92832	1	7423	7423		12.175	3.7304	1	4069300			12628	2282	9111	9183	12313	12313					-0.017486330504880243
ESHGVSPWWGS	11	Unmodified	_ESHGVSPWWGS_					0	0	0		ENST00000205386.8_1_7:107703372-107706232:-|nuORF	ENST00000205386.8_1_7:107703372-107706232:-|nuORF	ENST00000205386.8_1_7:107703372-107706232:-|nuORF	MSMS	A375_MHC_IP_R1	1	614.6748657226562	2	614.772719	1227.53089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.809	1	61.809	61.309	62.309	0								0	0	0	0.16108	1	22301	22301		13.042	0.80181	1				12629	10079	9112	9184	12314	12314					-0.0737782105588849
ESHHAALAF	9	Unmodified	_ESHHAALAF_					0	0	0		nc|ENSG00000073417|O60658-6|PDE8A;ENSG00000073417|ENST00000394553|PDE8A;ENST00000485596.5_1_15:85634092-85681131:+|nuORF;nc|ENSG00000073417|O60658-2|PDE8A	nc|ENSG00000073417|O60658-6|PDE8A	nc|ENSG00000073417|O60658-6|PDE8A	MULTI-SECPEP	A375_MHC_IP_R1	1	492.4775085449219	2	491.740691	981.466829	-0.22241	-0.00010937	3.2916	0.0016186	3.0691	0.0015092	491.7419863870612	42.239	0.60525	42.239	41.982	42.587	0					14	11	2	0	0	0	0.58271	1	14682	14682		26.884	18.973	1	956020			12630	1561	9113	9185	12315	12315					-0.024645564221486893
ESHLEYRLT	9	Unmodified	_ESHLEYRLT_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-MSMS	A375_MHC_IP_R1	1	574.211181640625	2	574.290745	1146.56694	-0.38077	-0.00021867	-0.083211	-4.7787E-05	-0.46398	-0.00026646	574.290686184678	24.317	1.5702	24.317	23.483	25.053	0					65	30	3	0	0	0	0.29981	1	7035	7035		30.637	3.7529	1	10112000	+		12631	18555	9114	9186	12316	12316					-0.00048363879000135057
ESHLEYRLT	9	Unmodified	_ESHLEYRLT_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-MSMS	A375_MHC_IP_R2	2	574.2109375	2	574.290745	1146.56694	-0.49644	-0.0002851	-0.13421	-7.7075E-05	-0.63065	-0.00036217	574.2905925887683	23.853	1.7794	24.483	23.368	25.148	0.63014					73	34	3	0	0	0	0.29981	1	7763	7763		30.637	3.7529	1	6700800	+		12632	18555	9114	9186	12317	12317					-0.00048363879000135057
ESHLEYRLT	9	Unmodified	_ESHLEYRLT_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	574.290745	1146.56694	-0.38077	-0.00021867	-0.083211	-4.7787E-05	-0.46398	-0.00026646	574.290686184678	24.317	1.5702	24.317	23.483	25.053	0	-0.082827	3.0774E-05	NaN	30.637	65	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10112000	+		12633	18555	9114	9186							-0.00048363879000135057
ESHLEYRLT	9	Unmodified	_ESHLEYRLT_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	574.290745	1146.56694	-0.49644	-0.0002851	-0.13421	-7.7075E-05	-0.63065	-0.00036217	574.2905925887683	23.853	1.7794	24.483	23.368	25.148	0.63014	0.082827	-2.7802E-05	NaN	30.637	73	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6700800	+		12634	18555	9114	9186							-0.00048363879000135057
ESHLIDFRE	9	Unmodified	_ESHLIDFRE_					0	0	0		nc|ENSG00000131067|Q9UJ14-4|GGT7;nc|ENSG00000131067|Q9UJ14-5|GGT7;ENSG00000131067|ENST00000336431|GGT7	nc|ENSG00000131067|Q9UJ14-4|GGT7	nc|ENSG00000131067|Q9UJ14-4|GGT7	MULTI-SECPEP	A375_MHC_IP_R1	1	383.2764892578125	3	382.524372	1144.55129	0.33349	0.00012757	-0.16586	-6.3447E-05	0.16763	6.4121E-05	382.5243400896286	25.097	0.60726	25.097	24.801	25.408	0					19	11	2	0	0	0	0.60917	1	7285	7285		18.373	10.764	1	2591500			12635	4307	9115	9187	12318	12318					-0.015206503960371265
ESHLIDFRE	9	Unmodified	_ESHLIDFRE_					0	0	0		nc|ENSG00000131067|Q9UJ14-4|GGT7;nc|ENSG00000131067|Q9UJ14-5|GGT7;ENSG00000131067|ENST00000336431|GGT7	nc|ENSG00000131067|Q9UJ14-4|GGT7	nc|ENSG00000131067|Q9UJ14-4|GGT7	MULTI-SECPEP	A375_MHC_IP_R2	2	382.63238525390625	3	382.524372	1144.55129	-0.46588	-0.00017821	-0.033508	-1.2818E-05	-0.49939	-0.00019103	382.5244063709042	24.681	0.25236	25.325	25.212	25.465	0.64368					7	4	2	0	0	0	0.73008	1	8213	8213		12.175	6.772	1	1153400			12636	4307	9115	9187	12319	12319					-0.015206503960371265
ESHQGSGGG	9	Unmodified	_ESHQGSGGG_					0	0	0			REV__LCE1C|p.G115E|1|0.33|ENSG00000197084|chr1:152805135-152805135|C/T|missense_variant	REV__LCE1C|p.G115E|1|0.33|ENSG00000197084|chr1:152805135-152805135|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	814.8756713867188	1	815.327835	814.320559	-0.39373	-0.00032102	4.0862	0.0033316	3.6925	0.0030106	815.3311993080379	125.52	1.3577	125.52	124.54	125.9	0					32	26	2	0	0	0	0.78348	1	47522	47522		4.3292	1.7518	1	2116999999.9999998	+		12637	26919	9116	9188	12320	12320					-0.09402858658017976
ESHSIGTGEF	10	Unmodified	_ESHSIGTGEF_					0	0	0			REV__TRIT1|p.E194G|1|0.27|ENSG00000043514|chr1:39850241-39850241|T/C|missense_variant	REV__TRIT1|p.E194G|1|0.27|ENSG00000043514|chr1:39850241-39850241|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	532.6373901367188	2	532.238178	1062.4618	-0.4998	-0.00026601	-1.0114	-0.00053829	-1.5112	-0.0008043	532.2376580542693	72.499	0.65905	72.499	72.271	72.93	0					21	12	2	0	0	0	0.62155	1	26407	26407		19.257	2.1441	1	2654200	+		12638	28908	9117	9189	12321	12321					-0.0669290507541973
ESHSVTKLEC	10	Unmodified	_ESHSVTKLEC_					0	0	0		nc|ENSG00000114316|Q13107-3|USP4	nc|ENSG00000114316|Q13107-3|USP4	nc|ENSG00000114316|Q13107-3|USP4	MULTI-MSMS	A375_MHC_IP_R1	1	567.168701171875	2	566.768788	1131.52302	0.095781	5.4285E-05	0.18205	0.00010318	0.27783	0.00015747	566.7688786984736	49.277	0.76036	49.277	48.831	49.591	0					21	14	2	0	0	0	0.52785	1	17441	17441		26.268	0.86883	1	2581900			12639	14555	9118	9190	12322	12322					-0.03747716367638532
ESHSVTKLEC	10	Unmodified	_ESHSVTKLEC_					0	0	0		nc|ENSG00000114316|Q13107-3|USP4	nc|ENSG00000114316|Q13107-3|USP4	nc|ENSG00000114316|Q13107-3|USP4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	566.768788	1131.52302	0.095781	5.4285E-05	0.18205	0.00010318	0.27783	0.00015747	566.7688786984736	49.277	0.76036	49.277	48.831	49.591	0	-0.028246	-0.00015572	NaN	26.268	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2581900			12640	14555	9118	9190							-0.03747716367638532
ESIDEDDDY	9	Unmodified	_ESIDEDDDY_					0	0	0		ENSG00000103381|ENST00000381774|CPPED1	ENSG00000103381|ENST00000381774|CPPED1	ENSG00000103381|ENST00000381774|CPPED1	MSMS	A375_MHC_IP_R2	2	550.710205078125	2	550.698748	1099.38294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.52	1	102.29	101.79	102.79	0.76428								0	0	0	0.15486	1	38481	38481		4.3292	0	1				12641	2449	9119	9191	12323	12323					-0.16277221891027693
ESIDQCPQSI	10	Unmodified	_ESIDQCPQSI_					0	0	0			REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	MULTI-MSMS	A375_MHC_IP_R2	2	561.1847534179688	2	560.252971	1118.49139	-0.58017	-0.00032504	0.70131	0.00039291	0.12114	6.787E-05	560.2533161892454	88.33	1.0122	89.062	88.774	89.786	0.7318					36	19	3	0	0	0	0.63639	1	33616	33616		18.146	4.2403	1	4504500	+		12642	20885	9120	9192	12324	12324					-0.06311709121587228
ESIGRFVHY	9	Unmodified	_ESIGRFVHY_					0	0	0			REV__ENSG00000182752|ENST00000328252|PAPPA	REV__ENSG00000182752|ENST00000328252|PAPPA	MSMS	A375_MHC_IP_R1	1	554.1892700195312	2	554.282723	1106.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.16	1	86.16	85.66	86.66	0								0	0	0	0.15283	1	31586	31586		16.942	1.0951	1		+		12643	21706	9121	9193	12325	12325					0.001879746747590616
ESIIEKGKKF	10	Unmodified	_ESIIEKGKKF_					0	0	0		ENSG00000206530|ENST00000393845|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	MULTI-MSMS	A375_MHC_IP_R2	2	393.9553527832031	3	393.564168	1177.67067	-0.4439	-0.0001747	0.022487	8.8501E-06	-0.42141	-0.00016585	393.89854287968484	19.005	0.24981	19.608	19.483	19.733	0.60308					6	4	2	0	0	0	0.69871	1	5713	5713		12.873	3.3286	1	2437800			12644	9540	9122	9194	12326	12326					0.08894543228666407
ESIIRISVPI	10	Unmodified	_ESIIRISVPI_					0	0	0		tr|U7SSH7|U7SSH7_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01455PE=3SV=1;tr|U7SSQ2|U7SSQ2_FUSNULIVCSfamilybranched-chainaminoacid:cationtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01449PE=3SV=1	tr|U7SSH7|U7SSH7_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01455PE=3SV=1	tr|U7SSH7|U7SSH7_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01455PE=3SV=1	MSMS	A375_MHC_IP_R2	2	564.007568359375	2	563.845156	1125.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.802	1	89.533	89.033	90.033	0.7318								0	0	0	0.15475	1	33796	33796		9.3831	4.1525	1				12645	29635	9123	9195	12327	12327					0.11794847091277916
ESIKETERFVS	11	Unmodified	_ESIKETERFVS_					0	0	0		nc|ENSG00000119125|Q9Y2T3-2|GDA;ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA;ENST00000477618.1_1_9:74817496-74842957:+|nuORF	nc|ENSG00000119125|Q9Y2T3-2|GDA	nc|ENSG00000119125|Q9Y2T3-2|GDA	MULTI-MSMS	A375_MHC_IP_R2	2	442.1553955078125	3	442.229625	1323.66705	-0.80235	-0.00035482	0.28419	0.00012568	-0.51816	-0.00022915	442.2297353038786	25.864	0.35693	26.524	26.245	26.602	0.65992					12	6	3	0	0	0	0.72649	1	8631	8631		6.6235	2.2173	1	2306600			12646	3574	9124	9196	12328	12328					0.018158286641209997
ESIKGEAVLEE	11	Unmodified	_ESIKGEAVLEE_					0	0	0			REV__ENST00000466134.5_1_21:45719988-45734072:+|nuORF	REV__ENST00000466134.5_1_21:45719988-45734072:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	602.7088012695312	2	602.3088	1202.60305	-0.34377	-0.00020705	0.70447	0.00042431	0.3607	0.00021725	602.30915984415	25.087	0.55682	25.087	24.903	25.46	0					21	10	3	0	0	0	0.71476	1	7265	7265		14.405	0.79051	1	10040000	+		12647	19290	9125	9197	12329	12329					0.009850485072320225
ESIKRKLLF	9	Unmodified	_ESIKRKLLF_					0	0	0		KRTDAP|p.P78L|1|0.08|ENSG00000188508|chr19:35487740-35487740|G/A|missense_variant	KRTDAP|p.P78L|1|0.08|ENSG00000188508|chr19:35487740-35487740|G/A|missense_variant	KRTDAP|p.P78L|1|0.08|ENSG00000188508|chr19:35487740-35487740|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	378.6056823730469	3	378.572886	1132.69683	-0.33205	-0.00012571	-0.037325	-1.413E-05	-0.36938	-0.00013984	378.5727325183826	25.529	0.2522	26.18	26.034	26.286	0.6503					7	4	2	0	0	0	0.71358	1	8563	8563		5.7834	0.38072	1	1991200			12648	14242	9126	9198	12330	12330					0.13578857190805138
ESIPEWEHLD	10	Unmodified	_ESIPEWEHLD_					0	0	0		nc|ENSG00000107798|P38571-2|LIPA;ENSG00000107798|ENST00000336233|LIPA	nc|ENSG00000107798|P38571-2|LIPA	nc|ENSG00000107798|P38571-2|LIPA	MULTI-SECPEP	A375_MHC_IP_R1	1	627.6611938476562	2	627.785492	1253.55643	-0.57957	-0.00036385	0.055162	3.463E-05	-0.52441	-0.00032922	627.7852356857635	61.763	0.45988	61.763	61.534	61.994	0					12	8	2	0	0	0	0.92832	1	22246	22246		19.257	8.4575	1	1794700			12649	2759	9127	9199	12331	12331					-0.06020391324091179
ESIPEWEHLD	10	Unmodified	_ESIPEWEHLD_					0	0	0		nc|ENSG00000107798|P38571-2|LIPA;ENSG00000107798|ENST00000336233|LIPA	nc|ENSG00000107798|P38571-2|LIPA	nc|ENSG00000107798|P38571-2|LIPA	MULTI-MATCH	A375_MHC_IP_R2	2		2	627.785492	1253.55643	-1.13	-0.00070939	-0.26408	-0.00016578	-1.3941	-0.00087517	627.7857525921988	61.009	0.40348	61.754	61.566	61.97	0.74503	-0.0043052	-0.00024092	NaN	19.257	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1144200			12650	2759	9127	9199							-0.06020391324091179
ESIPSAPGTLP	11	Unmodified	_ESIPSAPGTLP_					0	0	0		nc|ENSG00000156687|Q6UXZ4-2|UNC5D;ENSG00000156687|ENST00000404895|UNC5D	nc|ENSG00000156687|Q6UXZ4-2|UNC5D	nc|ENSG00000156687|Q6UXZ4-2|UNC5D	MSMS	A375_MHC_IP_R2	2	534.7194213867188	2	534.782222	1067.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.118	1	23.748	23.248	24.248	0.63014								0	0	0	0.16213	1	7393	7393		7.609	2.3783	1				12651	6205	9128	9200	12332	12332					0.01881715515196447
ESIPVPKNAK	10	Unmodified	_ESIPVPKNAK_					0	0	0		nc|ENSG00000110888|Q6IMN6|CAPRIN2;nc|ENSG00000110888|Q6IMN6-9|CAPRIN2;ENSG00000110888|ENST00000695402|CAPRIN2;nc|ENSG00000110888|Q6IMN6-2|CAPRIN2;nc|ENSG00000110888|Q6IMN6-3|CAPRIN2;nc|ENSG00000110888|Q6IMN6-7|CAPRIN2;nc|ENSG00000110888|Q6IMN6-10|CAPRIN2;ENST00000548676.5_1_12:30862838-30884436:-|nuORF;ENST00000454014.6_1_12:30862838-30884436:-|nuORF;nc|ENSG00000110888|Q6IMN6-6|CAPRIN2;ENST00000537553.5_1_12:30873726-30884436:-|nuORF	nc|ENSG00000110888|Q6IMN6|CAPRIN2	nc|ENSG00000110888|Q6IMN6|CAPRIN2	MULTI-SECPEP	A375_MHC_IP_R1	1	542.1715698242188	2	541.813856	1081.61316	-0.68752	-0.00037251	1.2127	0.00065704	0.52515	0.00028453	541.8145303785832	19.733	0.4079	19.733	19.521	19.928	0					12	7	2	0	0	0	0.92227	1	4934	4934		5.2969	2.0156	1	1467600			12652	2955	9129	9201	12333	12333					0.07561701023087153
ESIREEDFTY	10	Unmodified	_ESIREEDFTY_					0	0	0		ENSG00000174130|ENST00000508254|TLR6;nc|ENSG00000174130|Q9Y2C9-2|TLR6	ENSG00000174130|ENST00000508254|TLR6	ENSG00000174130|ENST00000508254|TLR6	MULTI-SECPEP	A375_MHC_IP_R1	1	645.1873168945312	2	644.788232	1287.56191	-0.8053	-0.00051925	1.629	0.0010504	0.82369	0.00053111	644.7877068864475	68.21	0.55978	68.21	67.955	68.514	0					28	10	4	0	0	0	0.87163	1	24734	24734		19.257	1.1106	1	2661500			12653	7857	9130	9202	12334	12334					-0.0703671253227185
ESKAWVRIL	9	Unmodified	_ESKAWVRIL_					0	0	0		ENST00000483463.1_1_1:154936075-154936129:-|nuORF	ENST00000483463.1_1_1:154936075-154936129:-|nuORF	ENST00000483463.1_1_1:154936075-154936129:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	368.2855224609375	3	367.885353	1100.63423	0.26284	9.6694E-05	-0.07313	-2.6904E-05	0.18971	6.9791E-05	367.885258514267	28.388	0.70748	28.388	27.987	28.694	0					30	13	4	0	0	0	0.50892	1	8722	8722		19.362	0.98885	1	28833000			12654	12543	9131	9203	12335	12335					0.08793711122621062
ESKEKIIY	8	Unmodified	_ESKEKIIY_					0	0	0		tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	505.663330078125	2	505.281857	1008.54916	-0.72315	-0.00036539	0.98541	0.00049791	0.26227	0.00013252	505.2823240940584	31.71	0.40501	32.446	32.249	32.654	0.73691					12	7	3	0	0	0	0.88903	1	11204	11204		13.042	0	1	1931800			12655	29815	9132	9204	12336	12336					0.04522920866145341
ESKEYRPGKW	10	Unmodified	_ESKEYRPGKW_					0	0	0		ALPK2|p.N1229K|1|0.45|ENSG00000198796|chr18:58536500-58536500|A/C|missense_variant	ALPK2|p.N1229K|1|0.45|ENSG00000198796|chr18:58536500-58536500|A/C|missense_variant	ALPK2|p.N1229K|1|0.45|ENSG00000198796|chr18:58536500-58536500|A/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	427.5877380371094	3	427.219172	1278.63569	-0.29215	-0.00012481	-0.0031091	-1.3283E-06	-0.29526	-0.00012614	427.21918688858074	65.273	0.70885	66.011	65.766	66.475	0.73812					25	13	3	0	0	0	0.70741	1	24680	24680		8.9762	0.68981	1	1508500			12656	107	9133	9205	12337	12337					0.007513004207112317
ESKFKFDD	8	Unmodified	_ESKFKFDD_					0	0	0			REV__nc|ENSG00000116852|O75037-3|KIF21B	REV__nc|ENSG00000116852|O75037-3|KIF21B	MULTI-MSMS	A375_MHC_IP_R1	1	509.6765441894531	2	508.24019	1014.46583	-0.48831	-0.00024818	-0.15783	-8.0216E-05	-0.64614	-0.00032839	508.2400393153805	36.239	0.71142	36.239	35.932	36.644	0					32	13	4	0	0	0	0.77488	1	12167	12167		13.508	13.508	1	12048000	+		12657	17977	9134	9206	12338	12338					-0.0408281558170529
ESKFQWRFSRE	11	Unmodified	_ESKFQWRFSRE_					0	0	0		ENST00000483671.1_1_3:16358337-16412408:-|nuORF;ENSG00000131378|ENST00000334133|RFTN1	ENST00000483671.1_1_3:16358337-16412408:-|nuORF	ENST00000483671.1_1_3:16358337-16412408:-|nuORF	MSMS	A375_MHC_IP_R2	2	500.65814208984375	3	500.584513	1498.73171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.188	1	25.832	25.332	26.332	0.64368								0	0	0	0.16342	1	8388	8388		0.92553	0	1				12658	4325	9135	9207	12339	12339					0.0022944826077946345
ESKIWEHLEK	10	Unmodified	_ESKIWEHLEK_					0	0	0		ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENST00000505048.1_1_5:108924266-108924368:+|nuORF	ENST00000396959.2_1_3:12829511-12830132:-|nuORF	ENST00000396959.2_1_3:12829511-12830132:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	433.6282043457031	3	433.562827	1297.66665	-0.55487	-0.00024057	-0.20765	-9.0028E-05	-0.76252	-0.0003306	433.56268585510725	60.931	0.40457	61.676	61.464	61.869	0.74503					10	7	2	0	0	0	0.72006	1	23062	23062		3.3196	0.47636	1	1500000			12659	11498	9136	9208	12340	12340					0.029724537349466118
ESKKEDLVFIF	11	Unmodified	_ESKKEDLVFIF_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65623404-65625570:-|nuORF;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2	ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	A375_MHC_IP_R2	2	452.6468505859375	3	452.246616	1353.71802	-0.11822	-5.3464E-05	0.24599	0.00011125	0.12778	5.7786E-05	452.2466351156408	93.667	0.50774	94.412	94.058	94.566	0.74474					25	9	4	0	0	0	0.48838	1	35589	35589		21.241	7.7227	1	2464500			12660	7732;6948	9137	9209	12341	12341					0.05530777708986534
ESKKEDLVFIF	11	Unmodified	_ESKKEDLVFIF_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65623404-65625570:-|nuORF;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2	ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	A375_MHC_IP_R2	2	678.265869140625	2	677.866285	1353.71802	-0.51864	-0.00035157	-0.072771	-4.9329E-05	-0.59142	-0.0004009	677.8659466761115	93.602	0.40533	94.347	94.211	94.616	0.74474					16	7	3	0	0	0	0.36212	1	35595	35595		41.956	11.319	1	2683700			12661	7732;6948	9137	9209	12342	12342					0.05530777708986534
ESKKRDSAPW	10	Unmodified	_ESKKRDSAPW_					0	0	0			REV__ENSG00000196189|ENST00000368285|SEMA4A;REV__ENST00000470306.5_1_1:156126086-156128580:+|nuORF	REV__ENSG00000196189|ENST00000368285|SEMA4A	MULTI-MSMS	A375_MHC_IP_R1	1	402.27520751953125	3	401.875405	1202.60439	-0.32685	-0.00013135	0.096802	3.8902E-05	-0.23004	-9.2449E-05	401.8754111868672	25.15	0.70964	25.15	24.852	25.562	0					31	13	3	0	0	0	0.66308	1	7254	7254		10.315	0	1	18651000	+		12662	22168;25102	9138	9210	12343	12343					0.011187273866198666
ESKKSSNKR	9	Unmodified	_ESKKSSNKR_					0	0	0			REV__ENSG00000187833|ENST00000409561|C2orf78	REV__ENSG00000187833|ENST00000409561|C2orf78	MULTI-SECPEP	A375_MHC_IP_R2	2	531.6577758789062	2	532.296362	1062.57817	-0.71296	-0.00037951	-0.51348	-0.00027333	-1.2264	-0.00065283	532.296443467609	31.647	1.1184	32.383	32.095	33.213	0.73691					37	21	3	0	0	0	0.74412	1	11187	11187		6.2058	6.2058	1	7019800	+		12663	22052	9139	9211	12344	12344					0.049384582151333234
ESKKSSNKR	9	Unmodified	_ESKKSSNKR_					0	0	0			REV__ENSG00000187833|ENST00000409561|C2orf78	REV__ENSG00000187833|ENST00000409561|C2orf78	MULTI-MATCH	A375_MHC_IP_R1	1		2	532.296362	1062.57817	-0.81945	-0.00043619	-0.30297	-0.00016127	-1.1224	-0.00059746	532.2965220740291	32.379	0.96017	32.379	32.179	33.14	0	-0.0022843	0.00011996	NaN	6.2058	22	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8536400	+		12664	22052	9139	9211							0.049384582151333234
ESKLKDLKK	9	Unmodified	_ESKLKDLKK_					0	0	0			REV__ENSG00000055208|ENST00000637181|TAB2	REV__ENSG00000055208|ENST00000637181|TAB2	MULTI-MSMS	A375_MHC_IP_R1	1	363.5731506347656	3	363.560646	1087.66011	-0.098899	-3.5956E-05	0.99166	0.00036053	0.89276	0.00032457	363.5609701742039	23.663	0.50821	23.663	23.483	23.991	0					20	9	3	0	0	0	0.6421	1	6572	6572		12.175	2.6308	1	10361000	+		12665	16413	9140	9212	12345	12345					0.11978560574220865
ESKLKELLK	9	Unmodified	_ESKLKELLK_					0	0	0		ENSG00000205442|ENST00000543880|IZUMO3	ENSG00000205442|ENST00000543880|IZUMO3	ENSG00000205442|ENST00000543880|IZUMO3	MULTI-MSMS	A375_MHC_IP_R2	2	363.57305908203125	3	363.228897	1086.66486	-0.43294	-0.00015726	-0.22764	-8.2684E-05	-0.66058	-0.00023994	363.22886291252655	22.406	1.5316	23.025	22.285	23.817	0.61932					43	29	2	0	0	0	0.67152	1	7312	7312		9.544	0	1	29921000			12666	9514	9141	9213	12346	12346					0.12499444716991093
ESKLQRNGF	9	Unmodified	_ESKLQRNGF_					0	0	0			REV__ENSG00000176771|ENST00000409261|NCKAP5	REV__ENSG00000176771|ENST00000409261|NCKAP5	MULTI-SECPEP	A375_MHC_IP_R1	1	539.1720581054688	2	539.78563	1077.55671	-0.19224	-0.00010377	0.11235	6.0648E-05	-0.079886	-4.3121E-05	539.7857399716921	44.601	0.45766	44.601	44.42	44.878	0					13	8	2	0	0	0	0.58271	1	15514	15514		6.2058	2.6093	1	1695700	+		12667	21417	9142	9214	12347	12347					0.02103073186435722
ESKLVQQKIL	10	Unmodified	_ESKLVQQKIL_					0	0	0			REV__ENST00000539320.2_1_12:125347034-125348347:-|nuORF	REV__ENST00000539320.2_1_12:125347034-125348347:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	592.6113891601562	2	593.363713	1184.71287	-0.69769	-0.00041399	0.19031	0.00011292	-0.50738	-0.00030106	593.3636168499706	72.554	0.45647	73.289	72.973	73.429	0.73541					12	8	2	0	0	0	0.92957	1	27524	27524		6.2058	0.9089	1	1707600	+		12668	25942	9143	9215	12348	12348					0.12790518637052628
ESKPGKQQW	9	Unmodified	_ESKPGKQQW_					0	0	0		CCDC141|p.A674T|1|0.27|ENSG00000163492|chr2:178872192-178872192|C/T|missense_variant;nc|ENSG00000163492|Q6ZP82-1|CCDC141;ENSG00000163492|ENST00000443758|CCDC141	CCDC141|p.A674T|1|0.27|ENSG00000163492|chr2:178872192-178872192|C/T|missense_variant	CCDC141|p.A674T|1|0.27|ENSG00000163492|chr2:178872192-178872192|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	544.6797485351562	2	544.28018	1086.54581	-0.61489	-0.00033467	-0.13689	-7.4505E-05	-0.75178	-0.00040918	544.2799710550577	58.982	0.55975	58.982	58.685	59.245	0					17	10	2	0	0	0	0.50702	1	21200	21200		19.257	0	1	4314800			12669	305	9144	9216	12349	12349					0.005996708121529082
ESKREYYQ	8	Unmodified	_ESKREYYQ_					0	0	0		tr|U7SEN1|U7SEN1_FUSNULipopolysaccharidebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02360PE=4SV=1	tr|U7SEN1|U7SEN1_FUSNULipopolysaccharidebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02360PE=4SV=1	tr|U7SEN1|U7SEN1_FUSNULipopolysaccharidebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02360PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	552.1615600585938	2	551.76182	1101.50909	-0.81706	-0.00045082	0.227	0.00012525	-0.59005	-0.00032557	551.7619548298528	39.764	0.25317	39.764	39.643	39.896	0					7	4	2	0	0	0	0.972	1	13654	13654		10.824	0	1	2624000			12670	29385	9145	9217	12350	12350					-0.03760625804443407
ESKREYYQ	8	Unmodified	_ESKREYYQ_					0	0	0		tr|U7SEN1|U7SEN1_FUSNULipopolysaccharidebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02360PE=4SV=1	tr|U7SEN1|U7SEN1_FUSNULipopolysaccharidebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02360PE=4SV=1	tr|U7SEN1|U7SEN1_FUSNULipopolysaccharidebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02360PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	368.5770263671875	3	368.176972	1101.50909	-0.043634	-1.6065E-05	-0.7459	-0.00027462	-0.78953	-0.00029069	368.1768518279628	38.942	0.46183	39.716	39.401	39.863	0.77451					10	8	2	0	0	0	0.972	1	14396	14396		6.7232	5.6517	1	2266900			12671	29385	9145	9217	12351	12351					-0.03760625804443407
ESKRKRKRRQK	11	Unmodified	_ESKRKRKRRQK_					0	0	0			REV__ENSG00000176988|ENST00000370467|FMR1NB	REV__ENSG00000176988|ENST00000370467|FMR1NB	MSMS	A375_MHC_IP_R2	2	500.66632080078125	3	500.649963	1498.92806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.294	1	74.029	73.529	74.529	0.73541								0	0	0	0.16338	1	27820	27820		1.1098	0.65524	1		+		12672	21434	9146	9218	12352	12352					0.1985529794519607
ESKRRITIY	9	Unmodified	_ESKRRITIY_					0	0	0			REV__nc|ENSG00000113722|P47902-2|CDX1	REV__nc|ENSG00000113722|P47902-2|CDX1	MSMS	A375_MHC_IP_R2	2	389.2592468261719	3	389.227779	1164.66151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.911	1	21.521	21.021	22.021	0.61029								0	0	0	0.15486	1	6546	6546		6.6304	0	1		+		12673	17800	9147	9219	12353	12353					0.08576194662987291
ESKRRQGLFY	10	Unmodified	_ESKRRQGLFY_					0	0	0			REV__ENSG00000155897|ENST00000286355|ADCY8	REV__ENSG00000155897|ENST00000286355|ADCY8	MSMS	A375_MHC_IP_R1	1	642.68798828125	2	642.346386	1282.67822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.921	1	59.921	59.421	60.421	0								0	0	0	0.15451	1	21565	21565		6.2058	0.47393	1		+		12674	19947	9148	9220	12354	12354					0.04818695548965479
ESKSFYKY	8	Unmodified	_ESKSFYKY_					0	0	0			REV__CAMLG|p.P232S|1|0.71|ENSG00000164615|chr5:134744047-134744047|C/T|missense_variant	REV__CAMLG|p.P232S|1|0.71|ENSG00000164615|chr5:134744047-134744047|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	351.25750732421875	3	351.17468	1050.50221	-0.26141	-9.1801E-05	-0.11331	-3.9793E-05	-0.37473	-0.00013159	351.1743113135414	32.3	0.61211	33.037	32.755	33.367	0.73692					22	11	3	0	0	0	0.91495	1	11471	11471		19.257	19.257	1	3214300	+		12675	15568	9149	9221	12355	12355					-0.0210193868499573
ESKSFYKY	8	Unmodified	_ESKSFYKY_					0	0	0			REV__CAMLG|p.P232S|1|0.71|ENSG00000164615|chr5:134744047-134744047|C/T|missense_variant	REV__CAMLG|p.P232S|1|0.71|ENSG00000164615|chr5:134744047-134744047|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	351.17468	1050.50221	-0.25177	-8.8416E-05	-0.33774	-0.00011861	-0.58951	-0.00020702	351.50920652221544	33.065	0.55669	33.065	32.734	33.291	0	0.014113	-0.00014143	NaN	13.906	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2449600	+		12676	15568	9149	9221							-0.0210193868499573
ESKSIVWYSP	10	Unmodified	_ESKSIVWYSP_					0	0	0		ARMCX3|p.P77S|1|0.45|ENSG00000102401|chrX:101625208-101625208|C/T|missense_variant	ARMCX3|p.P77S|1|0.45|ENSG00000102401|chrX:101625208-101625208|C/T|missense_variant	ARMCX3|p.P77S|1|0.45|ENSG00000102401|chrX:101625208-101625208|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	399.2874450683594	3	399.20464	1194.59209	-0.58571	-0.00023382	1.1138	0.00044463	0.52807	0.00021081	399.53941957334666	38.3	0.40775	38.3	38.016	38.423	0					13	7	3	0	0	0	0.93194	1	12932	12932		0.50596	0	1	3772200			12677	180	9150	9222	12356	12356					0.0025769092355858447
ESKSLIPSSKL	11	Unmodified	_ESKSLIPSSKL_					0	0	0			REV__ENST00000508434.1_1_5:34033255-34043308:-|nuORF	REV__ENST00000508434.1_1_5:34033255-34043308:-|nuORF	MSMS	A375_MHC_IP_R2	2	396.92767333984375	3	396.899328	1187.67615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.357	1	23.987	23.487	24.487	0.63014								0	0	0	0.162	1	7498	7498		8.2864	2.0521	1		+		12678	25580	9151	9223	12357	12357					0.08982222020472364
ESKSSFIQLYS	11	Unmodified	_ESKSSFIQLYS_					0	0	0			REV__ENST00000475774.5_1_9:36036951-36066822:+|nuORF	REV__ENST00000475774.5_1_9:36036951-36066822:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	430.6103515625	3	430.218837	1287.63468	-0.48629	-0.00020921	4.0819	0.0017561	3.5956	0.0015469	430.22076090438065	18.903	0.44613	19.506	19.438	19.884	0.60308					13	9	2	0	0	0	0.72964	1	5858	5858		9.2438	1.2984	1	9767600	+		12679	25176	9152	9224	12358	12358					0.002370412611753636
ESKVHMKY	8	Unmodified	_ESKVHMKY_					0	0	0			REV__nc|ENSG00000136518|O96019-2|ACTL6A	REV__nc|ENSG00000136518|O96019-2|ACTL6A	MULTI-SECPEP	A375_MHC_IP_R1	1	511.98846435546875	2	511.260402	1020.50625	-0.66828	-0.00034167	2.6292	0.0013442	1.9609	0.0010025	511.26193789581737	32.491	0.25163	32.491	32.333	32.585	0					7	4	2	0	0	0	0.972	1	10502	10502		13.508	9.1786	1	1430000	+		12680	18943	9153	9225	12359	12359					-0.0031817246292575874
ESLDTLKQF	9	Unmodified	_ESLDTLKQF_					0	0	0		ENSG00000183690|ENST00000420999|EFHC2	ENSG00000183690|ENST00000420999|EFHC2	ENSG00000183690|ENST00000420999|EFHC2	MULTI-MSMS	A375_MHC_IP_R2	2	540.1835327148438	2	540.782222	1079.54989	-1.0625	-0.00057458	0.4633	0.00025054	-0.59919	-0.00032403	540.7825098183167	51.581	1.1186	52.333	51.864	52.983	0.75225					39	16	4	0	0	0	0.64808	1	19545	19545		11.64	0.14559	1	30489000			12681	8519	9154	9226	12360	12360					0.013297155152031337
ESLFGKKY	8	Unmodified	_ESLFGKKY_					0	0	0		ENSG00000115641|ENST00000530340|FHL2;nc|ENSG00000115641|Q14192-2|FHL2	ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	MULTI-MSMS	A375_MHC_IP_R1	1	486.6617736816406	2	486.263468	970.512382	-0.36236	-0.0001762	-1.5303	-0.00074415	-1.8927	-0.00092035	486.26272196253484	33.053	0.50574	33.053	32.836	33.342	0					13	9	2	0	0	0	0.42086	1	10769	10769		52.268	9.3003	1	2520300			12682	3328	9155	9227	12361	12361					0.025946690402406603
ESLFSLDLLE	10	Unmodified	_ESLFSLDLLE_					0	0	0			REV__nc|ENSG00000102362|Q96C24-2|SYTL4	REV__nc|ENSG00000102362|Q96C24-2|SYTL4	MULTI-SECPEP	A375_MHC_IP_R2	2	389.2592468261719	3	389.204417	1164.59142	-0.49443	-0.00019243	0.36161	0.00014074	-0.13282	-5.1694E-05	389.2036017474196	21.115	0.50709	21.734	21.371	21.878	0.61932					30	9	4	0	0	0	0.93194	1	6546	6546		5.4027	0	1	2393600	+		12683	17217	9156	9228	12362	12362					0.015708514838934207
ESLGANADYC	10	Unmodified	_ESLGANADYC_					0	0	0			REV__GCAT|p.F142S|1|0.44|ENSG00000100116|chr22:37812984-37812984|T/C|missense_variant	REV__GCAT|p.F142S|1|0.44|ENSG00000100116|chr22:37812984-37812984|T/C|missense_variant	MSMS	A375_MHC_IP_R1	1	521.6454467773438	2	521.710939	1041.40732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.165	1	27.165	26.665	27.665	0								0	0	0	0.15158	1	8198	8198		14.838	3.198	1		+		12684	26671	9157	9229	12363	12363					-0.11172240218502338
ESLGANADYC	10	Unmodified	_ESLGANADYC_					0	0	0			REV__GCAT|p.F142S|1|0.44|ENSG00000100116|chr22:37812984-37812984|T/C|missense_variant	REV__GCAT|p.F142S|1|0.44|ENSG00000100116|chr22:37812984-37812984|T/C|missense_variant	MSMS	A375_MHC_IP_R1	1	521.6453857421875	2	521.710939	1041.40732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.205	1	27.205	26.705	27.705	0								0	0	0	0.15158	1	8217	8217		14.838	2.3067	1		+		12685	26671	9157	9229	12364	12364					-0.11172240218502338
ESLGANADYC	10	Unmodified	_ESLGANADYC_					0	0	0			REV__GCAT|p.F142S|1|0.44|ENSG00000100116|chr22:37812984-37812984|T/C|missense_variant	REV__GCAT|p.F142S|1|0.44|ENSG00000100116|chr22:37812984-37812984|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	521.6453857421875	2	521.710939	1041.40732	-0.98038	-0.00051148	2.2246	0.0011606	1.2442	0.0006491	521.7126335449376	26.529	0.50675	27.189	26.907	27.414	0.65992					12	9	2	0	0	0	0.6806	1	9002	9002		14.838	3.198	1	1737700	+		12686	26671	9157	9229	12365	12365					-0.11172240218502338
ESLGHPLALW	10	Unmodified	_ESLGHPLALW_					0	0	0		ENST00000474488.1_1_2:234343429-234350860:+|nuORF	ENST00000474488.1_1_2:234343429-234350860:+|nuORF	ENST00000474488.1_1_2:234343429-234350860:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	374.3009948730469	3	374.869591	1121.58694	0.14632	5.4849E-05	0.33371	0.0001251	0.48003	0.00017995	374.8697791423249	52.928	0.45496	52.928	52.694	53.148	0					17	8	3	0	0	0	0.90853	1	18841	18841		3.5871	0	1	1156900			12687	12406	9158	9230	12366	12366					0.031014318516099593
ESLHGLDPL	9	Unmodified	_ESLHGLDPL_					0	0	0		ENST00000381962.3_1_20:627801-627969:-|nuORF	ENST00000381962.3_1_20:627801-627969:-|nuORF	ENST00000381962.3_1_20:627801-627969:-|nuORF	MSMS	A375_MHC_IP_R2	2	490.7005920410156	2	490.756007	979.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.639	1	58.388	57.888	58.888	0.74894								0	0	0	0.1535	1	21797	21797		15.847	0	1				12688	11380	9159	9231	12367	12367					0.006891771722393969
ESLHHGLDDI	10	Unmodified	_ESLHHGLDDI_					0	0	0		ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	MULTI-SECPEP	A375_MHC_IP_R2	2	568.2113647460938	2	568.272552	1134.53055	-0.27596	-0.00015682	2.3178	0.0013171	2.0418	0.0011603	568.2731761494304	92.282	0.35527	93.021	92.785	93.14	0.73901					8	6	2	0	0	0	0.91556	1	35075	35075		14.838	0	1	464920			12689	3722	9160	9232	12368	12368					-0.031332407757190595
ESLHKTLQP	9	Unmodified	_ESLHKTLQP_					0	0	0			REV__ENST00000426563.5_1_3:196018200-196044977:-|nuORF	REV__ENST00000426563.5_1_3:196018200-196044977:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1436767578125	2	526.790381	1051.56621	-0.99245	-0.00052281	0.29645	0.00015617	-0.696	-0.00036665	526.7904588911496	33.686	0.3027	34.438	34.247	34.55	0.75225					10	5	2	0	0	0	0.60917	1	12127	12127		25.399	4.9457	1	2214300	+		12690	22614	9161	9233	12369	12369					0.04248841471940068
ESLHKWLS	8	Unmodified	_ESLHKWLS_					0	0	0			REV__ENST00000344698.6_2_1:233120052-233120277:-|nuORF	REV__ENST00000344698.6_2_1:233120052-233120277:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	500.7046813964844	2	500.266542	998.51853	-0.38123	-0.00019071	0.16285	8.1469E-05	-0.21838	-0.00010925	500.2665086167265	74.227	0.50706	74.227	73.995	74.502	0					23	9	3	0	0	0	0.74945	1	27112	27112		20.454	2.3073	1	4849000	+		12691	23763	9162	9234	12370	12370					0.01921187271761937
ESLIAKKI	8	Unmodified	_ESLIAKKI_					0	0	0		ENSG00000166226|ENST00000299300|CCT2;nc|ENSG00000166226|P78371-2|CCT2;ENST00000550638.5_1_12:69979244-69982049:+|nuORF;ENST00000551620.5_1_12:69979244-69983508:+|nuORF	ENSG00000166226|ENST00000299300|CCT2	ENSG00000166226|ENST00000299300|CCT2	MULTI-SECPEP	A375_MHC_IP_R1	1	451.6530456542969	2	451.289485	900.564418	-0.23212	-0.00010475	0.11845	5.3454E-05	-0.11367	-5.1298E-05	451.2894607492991	31.222	0.75954	31.222	30.959	31.718	0					32	14	3	0	0	0	0.4193	1	9997	9997		68.081	6.7232	1	8688800			12692	7044	9163	9235	12371	12371					0.11015832453995245
ESLIAKKI	8	Unmodified	_ESLIAKKI_					0	0	0		ENSG00000166226|ENST00000299300|CCT2;nc|ENSG00000166226|P78371-2|CCT2;ENST00000550638.5_1_12:69979244-69982049:+|nuORF;ENST00000551620.5_1_12:69979244-69983508:+|nuORF	ENSG00000166226|ENST00000299300|CCT2	ENSG00000166226|ENST00000299300|CCT2	MULTI-SECPEP	A375_MHC_IP_R2	2	451.6894836425781	2	451.289485	900.564418	-0.29366	-0.00013252	-0.17511	-7.9024E-05	-0.46876	-0.00021155	451.28935479830665	30.42	0.65654	31.139	30.86	31.517	0.71857					30	12	3	0	0	0	0.1789	1	10653	10653		78.728	6.8058	1	6309000			12693	7044	9163	9235	12372	12372					0.11015832453995245
ESLIKEVLSK	10	Unmodified	_ESLIKEVLSK_					0	0	0			REV__ENSG00000134827|ENST00000257264|TCN1	REV__ENSG00000134827|ENST00000257264|TCN1	MSMS	A375_MHC_IP_R2	2	382.6241455078125	3	382.564056	1144.67034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.893	1	24.523	24.023	25.023	0.63014								0	0	0	0.15306	1	7760	7760		10.899	0.74838	1		+		12694	18806	9164	9236	12373	12373					0.10379123508801058
ESLKHEMAWA	10	Unmodified	_ESLKHEMAWA_					0	0	0		ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6	ENSG00000163029|ENST00000448223|SMC6	ENSG00000163029|ENST00000448223|SMC6	MULTI-MSMS	A375_MHC_IP_R1	1	401.5938415527344	3	401.193858	1200.55974	-0.29679	-0.00011907	0.57236	0.00022963	0.27558	0.00011056	401.19400106811486	43.702	0.55873	43.702	43.451	44.01	0					28	10	4	0	0	0	0.71455	1	15190	15190		5.7834	0.73591	1	5905100			12695	6624	9165	9237	12374	12374					-0.03251419751063622
ESLKKIKDF	9	Unmodified	_ESLKKIKDF_					0	0	0			REV__tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1	REV__tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	554.1860961914062	2	554.324057	1106.63356	-1.0922	-0.00060542	0.0090689	5.0271E-06	-1.0831	-0.0006004	554.323930731963	33.4	0.25441	34.152	33.942	34.196	0.75225					6	4	2	0	0	0	0.7911	1	11967	11967		7.2892	0	1	1408100	+		12696	28452	9166	9238	12375	12375					0.08450871682885008
ESLKQELATS	10	Unmodified	_ESLKQELATS_					0	0	0		nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1;ENSG00000127946|ENST00000336926|HIP1	nc|ENSG00000127946|O00291-3|HIP1	nc|ENSG00000127946|O00291-3|HIP1	MSMS	A375_MHC_IP_R2	2	553.1998291015625	2	553.290411	1104.56627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.283	1	54.034	53.534	54.534	0.75105								0	0	0	0.15136	1	20104	20104		15.248	2.7169	1				12697	4110	9167	9239	12376	12376					0.018167966812825398
ESLKSIRKY	9	Unmodified	_ESLKSIRKY_					0	0	0		nc|ENSG00000125779|Q9BZ23-3|PANK2;ENSG00000125779|ENST00000610179|PANK2;nc|ENSG00000125779|Q9BZ23|PANK2;ENST00000495692.5_1_20:3869620-3891228:+|nuORF;ENSG00000120137|ENST00000239231|PANK3;ENST00000525487.2_1_11:50227376-50227820:+|nuORF	nc|ENSG00000125779|Q9BZ23-3|PANK2	nc|ENSG00000125779|Q9BZ23-3|PANK2	MULTI-SECPEP	A375_MHC_IP_R1	1	374.9394226074219	3	375.220513	1122.63971	0.26051	9.7749E-05	-0.10005	-3.7541E-05	0.16046	6.0207E-05	375.2201205668509	19.767	0.55989	19.767	19.42	19.98	0					17	10	2	0	0	0	0.13199	1	4983	4983		61.09	38.432	1	1705500			12698	3988	9168	9240	12377	12377					0.08329389914433705
ESLLKSKACF	10	Unmodified	_ESLLKSKACF_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-MSMS	A375_MHC_IP_R1	1	375.92132568359375	3	375.870603	1124.58998	0.18424	6.9249E-05	-1.5686	-0.00058957	-1.3843	-0.00052033	375.870294610734	27.718	0.50521	27.718	27.432	27.937	0					15	9	3	0	0	0	0.71866	1	8353	8353		1.9064	0	1	1585100			12699	4222	9169	9241	12378	12378					0.03266938914111961
ESLLLASMAY	10	Unmodified	_ESLLLASMAY_					0	0	0		OR8U1|p.M206Tfs*8|1|0.13|ENSG00000172199|chr11:56376237-56376238|-/TA|frameshift_variant;ENSG00000172199|ENST00000302270|OR8U1	OR8U1|p.M206Tfs*8|1|0.13|ENSG00000172199|chr11:56376237-56376238|-/TA|frameshift_variant	OR8U1|p.M206Tfs*8|1|0.13|ENSG00000172199|chr11:56376237-56376238|-/TA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6459350585938	2	549.281	1096.54745	-0.68173	-0.00037446	-0.58358	-0.00032055	-1.2653	-0.00069501	549.2806488068372	48.077	0.40155	48.838	48.532	48.933	0.76128					11	7	2	0	0	0	0.91556	1	17949	17949		10.074	0	1	2026100			12700	7688	9170	9242	12379	12379					0.0030354378586707753
ESLLNHLLY	9	Unmodified	_ESLLNHLLY_					0	0	0		AFM|p.F162L|1|0.44|ENSG00000079557|chr4:73486970-73486970|T/G|missense_variant	AFM|p.F162L|1|0.44|ENSG00000079557|chr4:73486970-73486970|T/G|missense_variant	AFM|p.F162L|1|0.44|ENSG00000079557|chr4:73486970-73486970|T/G|missense_variant	MSMS	A375_MHC_IP_R2	2	551.3395385742188	2	551.300581	1100.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.928	1	39.703	39.203	40.203	0.77451								0	0	0	0.15486	1	14353	14353		7.9102	0.62092	1				12701	81	9171	9243	12380	12380					0.04034012131774034
ESLLYIHRHDP	11	Unmodified	_ESLLYIHRHDP_					0	0	0			REV__ENSG00000130827|ENST00000369682|PLXNA3	REV__ENSG00000130827|ENST00000369682|PLXNA3	MULTI-MSMS	A375_MHC_IP_R2	2	691.2567138671875	2	690.356951	1378.69935	-1.0776	-0.0007439	-0.92877	-0.00064118	-2.0063	-0.0013851	690.3562327143841	56.644	0.35768	57.394	57.152	57.51	0.75015					13	6	3	0	0	0	0.69231	1	21417	21417		16.149	1.7437	1	3774400	+		12702	18570	9172	9244	12381	12381					0.02514660857787021
ESLMEPAIWGE	11	Unmodified	_ESLMEPAIWGE_					0	0	0			REV__ENSG00000178607|ENST00000433197|ERN1	REV__ENSG00000178607|ENST00000433197|ERN1	MULTI-SECPEP	A375_MHC_IP_R1	1	632.0711059570312	2	631.292096	1260.56964	-0.59446	-0.00037528	0.37357	0.00023583	-0.22089	-0.00013945	631.2918190148513	50.89	0.60697	50.89	50.663	51.27	0					27	11	3	0	0	0	0.9754	1	18055	18055		8.1555	0	1	3724900	+		12703	21511	9173	9245	12382	12382					-0.050222765363514554
ESLMHTGQV	9	Unmodified	_ESLMHTGQV_					0	0	0		ENSG00000007314|ENST00000435607|SCN4A	ENSG00000007314|ENST00000435607|SCN4A	ENSG00000007314|ENST00000435607|SCN4A	MSMS	A375_MHC_IP_R1	1	501.20501708984375	2	501.239667	1000.46478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.435	1	70.435	69.935	70.935	0								0	0	0	0.15486	1	25574	25574		11.64	0	1				12704	941	9174	9246	12383	12383					-0.03543353222266887
ESLMHTGQV	9	Unmodified	_ESLMHTGQV_					0	0	0		ENSG00000007314|ENST00000435607|SCN4A	ENSG00000007314|ENST00000435607|SCN4A	ENSG00000007314|ENST00000435607|SCN4A	MSMS	A375_MHC_IP_R2	2	501.2051086425781	2	501.239667	1000.46478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.725	1	70.459	69.959	70.959	0.73421								0	0	0	0.15486	1	26425	26425		11.64	1.4569	1				12705	941	9174	9246	12384	12384					-0.03543353222266887
ESLNDKNYE	9	Unmodified	_ESLNDKNYE_					0	0	0		tr|U7SZ69|U7SZ69_FUSNUChaperoneproteinDnaJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaJPE=3SV=1	tr|U7SZ69|U7SZ69_FUSNUChaperoneproteinDnaJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaJPE=3SV=1	tr|U7SZ69|U7SZ69_FUSNUChaperoneproteinDnaJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaJPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	556.1686401367188	2	556.248743	1110.48293	-0.79972	-0.00044484	0.38667	0.00021509	-0.41305	-0.00022976	556.2486196674542	31.394	0.46037	32.113	31.872	32.332	0.71857					13	8	2	0	0	0	0.31062	1	11042	11042		29.841	1.3537	1	2967100			12706	29855	9175	9247	12385	12385					-0.0678893976657946
ESLNINRNSK	10	Unmodified	_ESLNINRNSK_					0	0	0		tr|U7T648|U7T648_FUSNUGamma-glutamylcyclotransferaseAIG2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00103PE=4SV=1	tr|U7T648|U7T648_FUSNUGamma-glutamylcyclotransferaseAIG2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00103PE=4SV=1	tr|U7T648|U7T648_FUSNUGamma-glutamylcyclotransferaseAIG2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00103PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	391.9283142089844	3	392.210676	1173.6102	-0.025227	-9.8941E-06	-2.5801	-0.0010119	-2.6053	-0.0010218	392.880096777805	33.014	0.4043	33.014	32.836	33.241	0					14	7	3	0	0	0	0.83327	1	10715	10715		20.871	6.653	1	1696900			12707	30042	9176	9248	12386	12386					0.030338258982510524
ESLNPNNLEY	10	Unmodified	_ESLNPNNLEY_					0	0	0		ENST00000559272.1_1_15:79756054-79760723:+|nuORF;ENSG00000169330|ENST00000305428|MINAR1	ENST00000559272.1_1_15:79756054-79760723:+|nuORF	ENST00000559272.1_1_15:79756054-79760723:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	597.1788330078125	2	596.777667	1191.54078	-0.56607	-0.00033782	0.86658	0.00051715	0.30051	0.00017934	596.778004938694	108.07	0.76672	108.83	108.46	109.22	0.75436					31	14	3	0	0	0	0.63381	1	40810	40810		31.268	1.4278	1	3440200			12708	7400	9177	9249	12387	12387					-0.04732677841138866
ESLNVFEGY	9	Unmodified	_ESLNVFEGY_					0	0	0			REV__tr|U7SQW6|U7SQW6_FUSNUThioredoxinreductase(NADPH)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01607PE=4SV=1	REV__tr|U7SQW6|U7SQW6_FUSNUThioredoxinreductase(NADPH)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01607PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	529.1527099609375	2	529.245472	1056.47639	-0.33352	-0.00017652	0.70434	0.00037277	0.37082	0.00019625	529.246019385302	95.31	0.9658	96.06	95.483	96.449	0.75045					22	18	2	0	0	0	0.070818	1	36140	36140		56.177	3.9087	1	632470	+		12709	28387	9178	9250	12388	12388					-0.049588329272637566
ESLPSSFKPFQ	11	Unmodified	_ESLPSSFKPFQ_					0	0	0		nc|ENSG00000080802|O95628-7|CNOT4	nc|ENSG00000080802|O95628-7|CNOT4	nc|ENSG00000080802|O95628-7|CNOT4	MSMS	A375_MHC_IP_R2	2	422.93499755859375	3	422.883677	1265.6292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.686	1	20.296	19.796	20.796	0.61029								0	0	0	0.16247	1	6067	6067		5.8681	2.7959	1				12710	14489	9179	9251	12389	12389					0.007013624693399834
ESLQKVLEKK	10	Unmodified	_ESLQKVLEKK_					0	0	0		TRAF3IP3|p.E293K|1|0.25|ENSG00000009790|chr1:209775451-209775451|G/A|missense_variant	TRAF3IP3|p.E293K|1|0.25|ENSG00000009790|chr1:209775451-209775451|G/A|missense_variant	TRAF3IP3|p.E293K|1|0.25|ENSG00000009790|chr1:209775451-209775451|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	401.5973815917969	3	401.243206	1200.70779	-0.044662	-1.792E-05	-0.16809	-6.7444E-05	-0.21275	-8.5365E-05	401.24313295381563	21.58	0.50749	21.58	21.301	21.808	0					13	9	2	0	0	0	0.71466	1	5626	5626		3.0723	0.63748	1	2930100			12711	30068	9180	9252	12390	12390					0.11546214774398322
ESLRELHIF	9	Unmodified	_ESLRELHIF_					0	0	0		ENSG00000179873|ENST00000589093|NLRP11;NLRP11|p.M632R|1|0.36|ENSG00000179873|chr19:55807961-55807961|A/C|missense_variant;nc|ENSG00000179873|P59045-3|NLRP11	ENSG00000179873|ENST00000589093|NLRP11	ENSG00000179873|ENST00000589093|NLRP11	MULTI-SECPEP	A375_MHC_IP_R1	1	572.1898803710938	2	572.31148	1142.60841	-0.41268	-0.00023618	-0.077344	-4.4265E-05	-0.49002	-0.00028045	572.3112560473072	46.996	0.35974	46.996	46.799	47.159	0					11	6	2	0	0	0	0.75466	1	16444	16444		4.3292	0	1	1703800			12712	8256	9181	9253	12391	12391					0.04280816880304883
ESLRIQAQF	9	Unmodified	_ESLRIQAQF_					0	0	0		ENSG00000173757|ENST00000293328|STAT5B;nc|ENSG00000126561|P42229-2|STAT5A;ENST00000468312.1_1_17:40370167-40384145:-|nuORF;ENSG00000126561|ENST00000590949|STAT5A	ENSG00000173757|ENST00000293328|STAT5B;ENSG00000126561|ENST00000590949|STAT5A	ENSG00000126561|ENST00000590949|STAT5A	MULTI-SECPEP	A375_MHC_IP_R1	1	546.69580078125	2	546.29583	1090.57711	-0.64493	-0.00035232	0.67204	0.00036713	0.027111	1.4811E-05	546.2959290851935	65.36	0.7655	65.36	65.105	65.871	0					30	14	3	0	0	0	0.011191	1	23676	23676		121.53	41.938	1	3335700			12713	7827;4049	9182	9254	12392	12392					0.03544243846226891
ESLRIQAQF	9	Unmodified	_ESLRIQAQF_					0	0	0		ENSG00000173757|ENST00000293328|STAT5B;nc|ENSG00000126561|P42229-2|STAT5A;ENST00000468312.1_1_17:40370167-40384145:-|nuORF;ENSG00000126561|ENST00000590949|STAT5A	ENSG00000173757|ENST00000293328|STAT5B;ENSG00000126561|ENST00000590949|STAT5A	ENSG00000126561|ENST00000590949|STAT5A	MULTI-MSMS	A375_MHC_IP_R2	2	546.708251953125	2	546.29583	1090.57711	-0.75524	-0.00041259	0.22355	0.00012212	-0.5317	-0.00029047	546.2957733561748	64.569	0.76435	65.309	65.054	65.819	0.74023					28	14	3	0	0	0	0.058226	1	24545	24545		57.722	3.8892	1	2934400			12714	7827;4049	9182	9254	12393	12393					0.03544243846226891
ESLRMVLQEW	10	Unmodified	_ESLRMVLQEW_					0	0	0		ENSG00000110756|ENST00000349215|HPS5;nc|ENSG00000110756|Q9UPZ3-2|HPS5;ENST00000352460.7_1_11:18303495-18317646:-|nuORF	ENSG00000110756|ENST00000349215|HPS5	ENSG00000110756|ENST00000349215|HPS5	MSMS	A375_MHC_IP_R1	1	430.96514892578125	3	430.888546	1289.64381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.287	1	41.287	40.787	41.787	0								0	0	0	0.15451	1	14244	14244		3.3196	0.88486	1				12715	2946	9183	9255	12394	12394					0.010571113458354375
ESLRNYYEQW	10	Unmodified	_ESLRNYYEQW_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	A375_MHC_IP_R1	1	694.7166137695312	2	694.317491	1386.62043	-0.49903	-0.00034649	-0.13498	-9.372E-05	-0.63402	-0.00044021	694.3173308133714	72.608	0.65875	72.608	72.321	72.98	0					28	12	3	0	0	0	0.011374	1	26396	26396		121.5	102.14	1	10982000			12716	3793	9184	9256	12395	12395					-0.0574161116715004
ESLRNYYEQW	10	Unmodified	_ESLRNYYEQW_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	A375_MHC_IP_R2	2	694.716796875	2	694.317491	1386.62043	-0.92416	-0.00064166	-0.30129	-0.00020919	-1.2255	-0.00085085	694.3172188872037	72.052	0.60651	72.786	72.516	73.122	0.73421					27	11	3	0	0	0	0.0089867	1	27291	27291		107.56	93.657	1	9054500			12717	3793	9184	9256	12396	12396					-0.0574161116715004
ESLRSHFEQW	10	Unmodified	_ESLRSHFEQW_					0	0	0		ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|472|529.17|0.0|25.66|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENSG00000135486|ENST00000340913|HNRNPA1	ENST00000452488.1_1_2:41383770-41384067:+|nuORF	ENST00000452488.1_1_2:41383770-41384067:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	440.6108093261719	3	440.210676	1317.6102	-0.27011	-0.0001189	0.11618	5.1143E-05	-0.15393	-6.7761E-05	440.21073016421605	53.071	0.6069	53.071	52.847	53.453	0					36	11	4	0	0	0	0.30332	1	18889	18889		39.923	14.966	1	17850000			12718	411	9185	9257	12397	12397					-0.03590174101714183
ESLRSHFEQW	10	Unmodified	_ESLRSHFEQW_					0	0	0		ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|472|529.17|0.0|25.66|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENSG00000135486|ENST00000340913|HNRNPA1	ENST00000452488.1_1_2:41383770-41384067:+|nuORF	ENST00000452488.1_1_2:41383770-41384067:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	440.6103210449219	3	440.210676	1317.6102	-0.73123	-0.00032189	0.20148	8.8693E-05	-0.52975	-0.0002332	440.2108068831966	52.344	0.80998	53.096	52.78	53.59	0.75225					37	15	4	0	0	0	0.40573	1	19696	19696		33.821	19.603	1	19813000			12719	411	9185	9257	12398	12398					-0.03590174101714183
ESLRSHFEQW	10	Unmodified	_ESLRSHFEQW_					0	0	0		ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|472|529.17|0.0|25.66|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENSG00000135486|ENST00000340913|HNRNPA1	ENST00000452488.1_1_2:41383770-41384067:+|nuORF	ENST00000452488.1_1_2:41383770-41384067:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	660.7134399414062	2	659.812376	1317.6102	-1.2985	-0.00085674	0.33335	0.00021995	-0.96511	-0.00063679	659.8126457908014	52.32	0.55685	53.072	52.677	53.234	0.75225					20	10	3	0	0	0	0.20671	1	19726	19726		47.732	20.103	1	4918400			12720	411	9185	9257	12399	12399					-0.03590174101714183
ESLRSSIHSS	10	Unmodified	_ESLRSSIHSS_					0	0	0		ENST00000438934.5_2_22:18980317-18980377:+|nuORF	ENST00000438934.5_2_22:18980317-18980377:+|nuORF	ENST00000438934.5_2_22:18980317-18980377:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	551.67578125	2	551.778002	1101.54145	-0.75182	-0.00041484	0.55098	0.00030402	-0.20084	-0.00011082	551.7783401252182	85.488	0.65996	85.488	85.261	85.921	0					18	12	2	0	0	0	0.91442	1	31314	31314		16.149	0.90062	1	2069200			12721	11954	9186	9258	12400	12400					-0.005258384014268813
ESLSKVSF	8	Unmodified	_ESLSKVSF_					0	0	0			REV__ENSG00000114770|ENST00000334444|ABCC5	REV__ENSG00000114770|ENST00000334444|ABCC5	MULTI-SECPEP	A375_MHC_IP_R2	2	449.139404296875	2	448.739825	895.465098	-0.54404	-0.00024413	-0.027737	-1.2447E-05	-0.57178	-0.00025658	448.7396888228487	54.455	0.60731	55.206	54.814	55.422	0.75075					25	11	3	0	0	0	0.4193	1	20526	20526		58.679	4.846	1	3517500	+		12722	17841	9187	9259	12401	12401					0.01318389769244277
ESLSQNQSNA	10	Unmodified	_ESLSQNQSNA_					0	0	0			REV__CD86|p.P243Qfs*18|1|0.3|ENSG00000114013|chr3:122109285-122109285|C/-|frameshift_variant	REV__CD86|p.P243Qfs*18|1|0.3|ENSG00000114013|chr3:122109285-122109285|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	539.6427612304688	2	539.243992	1076.47343	-0.68277	-0.00036818	-0.58547	-0.00031571	-1.2682	-0.00068389	539.2435843448171	60.779	0.50948	60.779	60.566	61.075	0					17	9	2	0	0	0	0.70793	1	21909	21909		8.7454	0	1	2354700	+		12723	15618	9188	9260	12402	12402					-0.06174708052094502
ESLSQNQSNA	10	Unmodified	_ESLSQNQSNA_					0	0	0			REV__CD86|p.P243Qfs*18|1|0.3|ENSG00000114013|chr3:122109285-122109285|C/-|frameshift_variant	REV__CD86|p.P243Qfs*18|1|0.3|ENSG00000114013|chr3:122109285-122109285|C/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	539.243992	1076.47343	-0.68277	-0.00036818	-0.58547	-0.00031571	-1.2682	-0.00068389	539.2435843448171	60.779	0.50948	60.779	60.566	61.075	0	-0.024973	0.00010133	NaN	8.7454	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2354700	+		12724	15618	9188	9260							-0.06174708052094502
ESLSRNKVLDY	11	Unmodified	_ESLSRNKVLDY_					0	0	0		nc|ENSG00000136250|P28039-2|AOAH;ENSG00000136250|ENST00000617537|AOAH	nc|ENSG00000136250|P28039-2|AOAH	nc|ENSG00000136250|P28039-2|AOAH	MULTI-MSMS	A375_MHC_IP_R1	1	662.7479858398438	2	662.348791	1322.68303	-0.56278	-0.00037276	-0.36109	-0.00023917	-0.92387	-0.00061192	662.3484849229638	61.357	0.40962	61.357	61.176	61.585	0					10	7	2	0	0	0	0.31304	1	22145	22145		45.74	12.295	1	3951700			12725	4772	9189	9261	12403	12403					0.03459534901048755
ESLSRNKVLDY	11	Unmodified	_ESLSRNKVLDY_					0	0	0		nc|ENSG00000136250|P28039-2|AOAH;ENSG00000136250|ENST00000617537|AOAH	nc|ENSG00000136250|P28039-2|AOAH	nc|ENSG00000136250|P28039-2|AOAH	MULTI-MSMS	A375_MHC_IP_R2	2	662.7476196289062	2	662.348791	1322.68303	-1.1637	-0.00077078	0.17669	0.00011703	-0.98701	-0.00065375	662.3487064020533	60.694	0.40547	61.439	61.263	61.668	0.74503					12	7	2	0	0	0	0.45155	1	22994	22994		34.932	7.3033	1	4105000			12726	4772	9189	9261	12404	12404					0.03459534901048755
ESLSYPRI	8	Unmodified	_ESLSYPRI_					0	0	0		nc|ENSG00000177324|Q8NDZ0-2|BEND2;ENSG00000177324|ENST00000380033|BEND2	nc|ENSG00000177324|Q8NDZ0-2|BEND2	nc|ENSG00000177324|Q8NDZ0-2|BEND2	MULTI-MSMS	A375_MHC_IP_R2	2	482.65289306640625	2	482.758549	963.502546	-0.66142	-0.00031931	-0.092049	-4.4437E-05	-0.75347	-0.00036374	482.75845966283674	40.373	1.2697	41.147	40.676	41.946	0.77451					82	24	5	0	0	0	0.74466	1	15159	15159		21.747	1.3321	1	99304000			12727	14783	9190	9262	12405	12405					0.01933481034848228
ESLTIWVTF	9	Unmodified	_ESLTIWVTF_					0	0	0		ENSG00000182752|ENST00000328252|PAPPA	ENSG00000182752|ENST00000328252|PAPPA	ENSG00000182752|ENST00000328252|PAPPA	MSMS	A375_MHC_IP_R2	2	548.1897583007812	2	548.289682	1094.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.752	1	71.486	70.986	71.986	0.73421								0	0	0	0.14905	1	26822	26822		23.148	0	1				12728	8433	9191	9263	12406	12406					0.02131207383195033
ESLVPSNNDY	10	Unmodified	_ESLVPSNNDY_					0	0	0			REV__nc|ENSG00000047648|O43182-4|ARHGAP6	REV__nc|ENSG00000047648|O43182-4|ARHGAP6	MULTI-MSMS	A375_MHC_IP_R2	2	569.6561279296875	2	569.256568	1136.49858	-0.68192	-0.00038819	1.6339	0.00093014	0.95203	0.00054195	569.256327938406	24.518	0.86292	25.162	24.907	25.77	0.64368					52	16	4	0	0	0	0.2347	1	8040	8040		45.7	11.298	1	39722000	+		12729	16363	9192	9264	12407	12407					-0.06420653249506358
ESLVPSNNDY	10	Unmodified	_ESLVPSNNDY_					0	0	0			REV__nc|ENSG00000047648|O43182-4|ARHGAP6	REV__nc|ENSG00000047648|O43182-4|ARHGAP6	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	569.256568	1136.49858	-0.68192	-0.00038819	1.6339	0.00093014	0.95203	0.00054195	569.256327938406	24.518	0.86292	25.162	24.907	25.77	0.64368	0.083689	-0.00017263	NaN	45.7	52	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39722000	+		12730	16363	9192	9264							-0.06420653249506358
ESLVPVFAL	9	Unmodified	_ESLVPVFAL_					0	0	0			REV__ENST00000568996.1_1_1:25573505-25664619:-|nuORF	REV__ENST00000568996.1_1_1:25573505-25664619:-|nuORF	MSMS	A375_MHC_IP_R2	2	487.68121337890625	2	487.781493	973.548434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.34	1	117	116.5	117.5	0.65962								0	0	0	0.040533	1	43924	43924		57.471	3.8958	1		+		12731	25148	9193	9265	12408	12408					0.06060126217084871
ESLWEGTQ	8	Unmodified	_ESLWEGTQ_					0	0	0		ENST00000557600.5_1_14:94547684-94567230:+|nuORF	ENST00000557600.5_1_14:94547684-94567230:+|nuORF	ENST00000557600.5_1_14:94547684-94567230:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	475.61669921875	2	475.216714	948.418876	-0.51134	-0.000243	0.14639	6.9569E-05	-0.36494	-0.00017343	475.2165786131133	75.065	0.50789	75.065	74.754	75.262	0					13	9	2	0	0	0	0.972	1	27385	27385		10.074	3.8681	1	1138800			12732	13455	9194	9266	12409	12409					-0.057396751328496975
ESLYRWEI	8	Unmodified	_ESLYRWEI_					0	0	0		ENST00000374469.5_1_9:113205862-113205937:-|nuORF	ENST00000374469.5_1_9:113205862-113205937:-|nuORF	ENST00000374469.5_1_9:113205862-113205937:-|nuORF	MSMS	A375_MHC_IP_R1	1	548.2135620117188	2	548.277106	1094.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.765	1	58.765	58.265	59.265	0								0	0	0	0.16876	1	21115	21115		32.305	3.2239	1				12733	11255	9195	9267	12410	12410					-0.0038284741938241496
ESLYWYIY	8	Unmodified	_ESLYWYIY_					0	0	0			REV__ENSG00000135040|ENST00000361671|NAA35	REV__ENSG00000135040|ENST00000361671|NAA35	MSMS	A375_MHC_IP_R1	1	568.7103271484375	2	568.768583	1135.52261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.275	1	60.275	59.775	60.775	0								0	0	0	0.16876	1	21699	21699		36.466	7.9793	1		+		12734	18818	9196	9268	12411	12411					-0.03972768025187179
ESMASLSDYE	10	Unmodified	_ESMASLSDYE_					0	0	0		ENSG00000166046|ENST00000299045|TCP11L2;nc|ENSG00000166046|Q8N4U5-2|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	MULTI-SECPEP	A375_MHC_IP_R1	1	566.6935424804688	2	566.229161	1130.44377	-0.62287	-0.00035269	0.63046	0.00035698	0.007589	4.2971E-06	566.7307319908444	32.544	0.30082	32.544	32.434	32.734	0					8	5	2	0	0	0	0.92957	1	10509	10509		3.2813	1.4371	1	1313600			12735	7020	9197	9269	12412	12412					-0.11623408112427569
ESMDELCFALS	11	Unmodified	_ESMDELCFALS_					0	0	0			REV__ENST00000476899.5_1_3:157828228-157828384:+|nuORF	REV__ENST00000476899.5_1_3:157828228-157828384:+|nuORF	MSMS	A375_MHC_IP_R2	2	622.7462158203125	2	622.762314	1243.51008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.55	1	128.79	128.29	129.29	0.23946								0	0	0	0.16249	1	50486	50486		5.7319	1.7875	1		+		12736	25191	9198	9270	12413	12413					-0.10193915542026843
ESMDIEFECT	10	Unmodified	_ESMDIEFECT_					0	0	0		ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	MSMS	A375_MHC_IP_R2	2	602.1971435546875	2	602.230847	1202.44714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.782	1	75.52	75.02	76.02	0.73752								0	0	0	0.15451	1	28384	28384		6.2058	0.47393	1				12737	8821	9199	9271	12414	12414					-0.1459848133010837
ESMFRESG	8	Unmodified	_ESMFRESG_					0	0	0		ENST00000558383.1_1_15:45393877-45400429:-|nuORF;nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENSG00000137857|ENST00000389037|DUOX1;ENST00000557893.5_1_15:45440187-45444854:+|nuORF	ENST00000558383.1_1_15:45393877-45400429:-|nuORF;ENST00000561220.6_1_15:45434150-45457096:+|nuORF	ENST00000558383.1_1_15:45393877-45400429:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	472.1407470703125	2	471.702917	941.391281	-0.40983	-0.00019332	0.86272	0.00040695	0.45289	0.00021363	471.70276243181115	83.303	0.40828	83.303	83.075	83.483	0					10	7	2	0	0	0	0.97021	1	30497	30497		10.824	6.8795	1	1234800			12738	5135;4930	9200	9272	12415	12415					-0.08175901664719731
ESMFRESG	8	Unmodified	_ESMFRESG_					0	0	0		ENST00000558383.1_1_15:45393877-45400429:-|nuORF;nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENSG00000137857|ENST00000389037|DUOX1;ENST00000557893.5_1_15:45440187-45444854:+|nuORF	ENST00000558383.1_1_15:45393877-45400429:-|nuORF;ENST00000561220.6_1_15:45434150-45457096:+|nuORF	ENST00000558383.1_1_15:45393877-45400429:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	472.1408996582031	2	471.702917	941.391281	-0.60747	-0.00028654	-0.60883	-0.00028719	-1.2163	-0.00057373	471.70243654610084	82.405	0.91383	83.148	82.533	83.447	0.74293					20	17	2	0	0	0	0.77562	1	31323	31323		10.824	2.2306	1	719370			12739	5135;4930	9200	9272	12416	12416					-0.08175901664719731
ESMGELMCYF	10	Unmodified	_ESMGELMCYF_					0	0	0			REV__nc|ENSG00000137474|Q13402-4|MYO7A;REV__nc|ENSG00000137474|Q13402-8|MYO7A	REV__nc|ENSG00000137474|Q13402-8|MYO7A	MULTI-SECPEP	A375_MHC_IP_R1	1	605.6356811523438	2	605.234878	1208.4552	-0.40071	-0.00024253	1.862	0.001127	1.4613	0.00088445	605.2358313348061	77.126	1.1166	77.126	76.37	77.486	0					30	21	2	0	0	0	0.90853	1	28140	28140		6.7232	0	1	1347100	+		12740	27248;19009	9201	9273	12417	12417					-0.1406862561429989
ESMKCHFTV	9	Unmodified	_ESMKCHFTV_					0	0	0			REV__TTN|p.G1316E|1|0.33|ENSG00000155657|chr2:178779245-178779245|C/T|missense_variant	REV__TTN|p.G1316E|1|0.33|ENSG00000155657|chr2:178779245-178779245|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	541.6795043945312	2	541.243895	1080.47324	-0.66772	-0.0003614	-0.57629	-0.00031191	-1.244	-0.00067331	541.2436024067098	43.746	1.0609	44.515	44.228	45.289	0.7691					30	20	2	0	0	0	0.58047	1	16424	16424		15.847	5.0233	1	2222700	+		12741	28930	9202	9274	12418	12418					-0.06378122577302747
ESMMEEMDQNC	11	Unmodified	_ESMMEEMDQNC_					0	0	0			REV__nc|ENSG00000198363|Q12797-10|ASPH	REV__nc|ENSG00000198363|Q12797-10|ASPH	MULTI-MSMS	A375_MHC_IP_R1	1	449.8835144042969	3	449.483763	1345.42946	-0.1461	-6.5669E-05	0.40954	0.00018408	0.26345	0.00011842	449.4837905842111	57.779	0.76191	57.779	57.415	58.177	0					35	14	4	0	0	0	0.7328	1	20719	20719		6.2344	0.45093	1	2436700	+		12742	22365	9203	9275	12419	12419					-0.22943887918881956
ESMMEEMDQNC	11	Unmodified	_ESMMEEMDQNC_					0	0	0			REV__nc|ENSG00000198363|Q12797-10|ASPH	REV__nc|ENSG00000198363|Q12797-10|ASPH	MULTI-MSMS	A375_MHC_IP_R2	2	674.1216430664062	2	673.722006	1345.42946	-1.0722	-0.00072236	0.35045	0.0002361	-0.72174	-0.00048625	673.7222351284804	57.348	0.61348	58.097	57.762	58.375	0.74894					29	11	3	0	0	0	0.68072	1	21668	21668		16.149	1.3108	1	6265500	+		12743	22365	9203	9275	12420	12420					-0.22943887918881956
ESMMEEMDQNC	11	Unmodified	_ESMMEEMDQNC_					0	0	0			REV__nc|ENSG00000198363|Q12797-10|ASPH	REV__nc|ENSG00000198363|Q12797-10|ASPH	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	449.483763	1345.42946	-0.1461	-6.5669E-05	0.40954	0.00018408	0.26345	0.00011842	449.4837905842111	57.779	0.76191	57.779	57.415	58.177	0	-0.17846	0.00025456	NaN	6.2344	35	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2436700	+		12744	22365	9203	9275							-0.22943887918881956
ESMMEEMDQNC	11	Unmodified	_ESMMEEMDQNC_					0	0	0			REV__nc|ENSG00000198363|Q12797-10|ASPH	REV__nc|ENSG00000198363|Q12797-10|ASPH	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	449.483763	1345.42946	-0.66242	-0.00029775	0.08259	3.7123E-05	-0.57983	-0.00026063	449.48373737353967	57.387	0.76645	58.135	57.711	58.477	0.74894	0.17846	-0.00018632	NaN	6.2344	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3805800	+		12745	22365	9203	9275							-0.22943887918881956
ESMWQAAW	8	Unmodified	_ESMWQAAW_					0	0	0			REV__ENST00000485161.5_1_3:120424933-120449568:-|nuORF	REV__ENST00000485161.5_1_3:120424933-120449568:-|nuORF	MSMS	A375_MHC_IP_R2	2	504.6468811035156	2	504.715827	1007.4171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.014	1	67.751	67.251	68.251	0.73631								0	0	0	0.16876	1	25388	25388		10.183	0.83596	1		+		12746	25308	9204	9276	12421	12421					-0.0863100742245706
ESMWQAAW	8	Unmodified	_ESMWQAAW_					0	0	0			REV__ENST00000485161.5_1_3:120424933-120449568:-|nuORF	REV__ENST00000485161.5_1_3:120424933-120449568:-|nuORF	MSMS	A375_MHC_IP_R2	2	504.6800842285156	2	504.715827	1007.4171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.079	1	67.815	67.315	68.315	0.73631								0	0	0	0.16876	1	25412	25412		10.183	0.80027	1		+		12747	25308	9204	9276	12422	12422					-0.0863100742245706
ESNASPGHYSD	11	Unmodified	_ESNASPGHYSD_					0	0	0			REV__ENSG00000158516|ENST00000222481|CPA2	REV__ENSG00000158516|ENST00000222481|CPA2	MULTI-MSMS	A375_MHC_IP_R2	2	582.1784057617188	2	582.233624	1162.4527	-0.36542	-0.00021276	-1.4357	-0.00083589	-1.8011	-0.0010486	582.2325770027829	76.47	0.96278	77.211	76.792	77.755	0.74052					36	18	3	0	0	0	0.65093	1	28976	28976		19.362	1.2156	1	5075400	+		12748	20080	9205	9277	12423	12423					-0.1220329843174568
ESNDEKAEW	9	Unmodified	_ESNDEKAEW_					0	0	0			REV__ENSG00000111642|ENST00000544040|CHD4	REV__ENSG00000111642|ENST00000544040|CHD4	MSMS	A375_MHC_IP_R2	2	554.1282958984375	2	554.233093	1106.45163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.769	1	76.509	76.009	77.009	0.74052								0	0	0	0.15142	1	28762	28762		19.257	2.3147	1		+		12749	17680	9206	9278	12424	12424					-0.09733512800653443
ESNDVSYQL	9	Unmodified	_ESNDVSYQL_					0	0	0			REV__nc|ENSG00000177103|Q8TD84-2|DSCAML1	REV__nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6493530273438	2	527.738011	1053.46147	-0.40011	-0.00021115	3.16	0.0016676	2.7599	0.0014565	528.2396315012593	90.125	0.71176	90.857	90.597	91.309	0.7318					18	13	2	0	0	0	0.65246	1	34259	34259		15.847	1.0089	1	1143100	+		12750	21439	9207	9279	12425	12425					-0.06312324795294444
ESNENFEGY	9	Unmodified	_ESNENFEGY_					0	0	0		ENSG00000114113|ENST00000232217|RBP2	ENSG00000114113|ENST00000232217|RBP2	ENSG00000114113|ENST00000232217|RBP2	MSMS	A375_MHC_IP_R1	1	544.638427734375	2	544.711993	1087.40943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.564	1	47.564	47.064	48.064	0								0	0	0	0.15486	1	16738	16738		10.824	2.2306	1				12751	3197	9208	9280	12426	12426					-0.13077488209023613
ESNFPDANI	9	Unmodified	_ESNFPDANI_					0	0	0			REV__ENSG00000077044|ENST00000264057|DGKD	REV__ENSG00000077044|ENST00000264057|DGKD	MULTI-MSMS	A375_MHC_IP_R1	1	504.18182373046875	2	503.727446	1005.44034	-0.30671	-0.0001545	-0.50905	-0.00025642	-0.81576	-0.00041092	503.7277244176649	70.857	0.66534	70.857	70.392	71.057	0					19	12	2	0	0	0	0.63811	1	25651	25651		12.532	0	1	1609600	+		12752	16685	9209	9281	12427	12427					-0.06216290104134714
ESNINYNT	8	Unmodified	_ESNINYNT_					0	0	0		nc|ENSG00000110013|Q9HAT2-2|SIAE;ENSG00000110013|ENST00000263593|SIAE	nc|ENSG00000110013|Q9HAT2-2|SIAE	nc|ENSG00000110013|Q9HAT2-2|SIAE	MULTI-MSMS	A375_MHC_IP_R2	2	477.6320495605469	2	477.711796	953.40904	-1.1427	-0.00054589	0.68146	0.00032554	-0.46127	-0.00022035	477.7120125395411	36.822	0.50714	37.593	37.41	37.917	0.7709					21	9	3	0	0	0	0.75389	1	13370	13370		19.257	2.3147	1	4812800			12753	2908	9210	9282	12428	12428					-0.06952863138235443
ESNLLWDHN	9	Unmodified	_ESNLLWDHN_					0	0	0			REV__ENST00000435844.3_2_20:18548090-18550131:+|nuORF	REV__ENST00000435844.3_2_20:18548090-18550131:+|nuORF	MSMS	A375_MHC_IP_R1	1	564.1813354492188	2	564.259445	1126.50434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.79	1	57.79	57.29	58.29	0								0	0	0	0.12988	1	20743	20743		32.786	12.371	1		+		12754	24756	9211	9283	12429	12429					-0.05385509947177525
ESNMPLTM	8	Unmodified	_ESNMPLTM_					0	0	0		ENST00000558588.5_1_15:40583969-40599873:-|nuORF;nc|ENSG00000137841|Q00722-3|PLCB2;nc|ENSG00000137841|Q00722-2|PLCB2;ENSG00000137841|ENST00000260402|PLCB2	ENST00000558588.5_1_15:40583969-40599873:-|nuORF	ENST00000558588.5_1_15:40583969-40599873:-|nuORF	MSMS	A375_MHC_IP_R1	1	461.673828125	2	461.704071	921.393589	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.633	1	60.633	60.133	61.133	0								0	0	0	0.16876	1	21833	21833		9.3474	3.587	1				12755	4926	9212	9284	12430	12430					-0.07025189251282882
ESNNFDIPSQY	11	Unmodified	_ESNNFDIPSQY_					0	0	0			REV__ENSG00000198018|ENST00000370489|ENTPD7	REV__ENSG00000198018|ENST00000370489|ENTPD7	MULTI-MSMS	A375_MHC_IP_R1	1	657.6856689453125	2	657.285857	1312.55716	-0.55312	-0.00036356	-0.052259	-3.4349E-05	-0.60538	-0.00039791	657.2858052235277	76.75	0.56042	76.75	76.471	77.032	0					15	10	2	0	0	0	0.66366	1	27976	27976		18.373	9.6277	1	1838700	+		12756	22336	9213	9285	12431	12431					-0.08661596675028704
ESNNFDIPSQY	11	Unmodified	_ESNNFDIPSQY_					0	0	0			REV__ENSG00000198018|ENST00000370489|ENTPD7	REV__ENSG00000198018|ENST00000370489|ENTPD7	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	657.285857	1312.55716	-0.55312	-0.00036356	-0.052259	-3.4349E-05	-0.60538	-0.00039791	657.2858052235277	76.75	0.56042	76.75	76.471	77.032	0	-0.055493	-0.00017996	NaN	18.373	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1838700	+		12757	22336	9213	9285							-0.08661596675028704
ESNNFDIPSQY	11	Unmodified	_ESNNFDIPSQY_					0	0	0			REV__ENSG00000198018|ENST00000370489|ENTPD7	REV__ENSG00000198018|ENST00000370489|ENTPD7	MULTI-MATCH	A375_MHC_IP_R2	2		2	657.285857	1312.55716	-0.89338	-0.0005872	0.38347	0.00025205	-0.50991	-0.00033516	657.2857852164914	76.12	0.50792	76.861	76.691	77.199	0.74052	0.055493	0.00039283	NaN	18.373	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1584700	+		12758	22336	9213	9285							-0.08661596675028704
ESNNLIKVLI	10	Unmodified	_ESNNLIKVLI_					0	0	0			REV__tr|U7T0D3|U7T0D3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00938PE=4SV=1	REV__tr|U7T0D3|U7T0D3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00938PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	381.2853088378906	3	381.564168	1141.67067	0.52665	0.00020095	0.1699	6.4828E-05	0.69655	0.00026578	381.56392277234573	37.36	0.35748	37.36	37.198	37.556	0					15	6	3	0	0	0	0.93578	1	12609	12609		5.7834	0	1	1294500	+		12759	28675	9214	9286	12432	12432					0.10550543228691822
ESNNLPYSL	9	Unmodified	_ESNNLPYSL_					0	0	0		tr|U7SUB3|U7SUB3_FUSNUButyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01365PE=3SV=1	tr|U7SUB3|U7SUB3_FUSNUButyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01365PE=3SV=1	tr|U7SUB3|U7SUB3_FUSNUButyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01365PE=3SV=1	MSMS	A375_MHC_IP_R2	2	518.6886596679688	2	518.750921	1035.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.844	1	58.593	58.093	59.093	0.74894								0	0	0	0.15411	1	21876	21876		14.838	0.93222	1				12760	29752	9215	9287	12433	12433					-0.029034305530103666
ESNPRLVQWGH	11	Unmodified	_ESNPRLVQWGH_					0	0	0		ENST00000532710.5_1_11:4116209-4127349:+|nuORF	ENST00000532710.5_1_11:4116209-4127349:+|nuORF	ENST00000532710.5_1_11:4116209-4127349:+|nuORF	MSMS	A375_MHC_IP_R1	1	662.2587890625	2	661.833643	1321.65273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.68	1	121.68	121.18	122.18	0								0	0	0	0.16164	1	45207	45207		10.151	1.1743	1				12761	13188	9216	9288	12434	12434					0.0047722102649458975
ESNRGIVSCV	10	Unmodified	_ESNRGIVSCV_					0	0	0			REV__ENST00000573584.5_1_17:5323005-5323206:-|nuORF	REV__ENST00000573584.5_1_17:5323005-5323206:-|nuORF	MSMS	A375_MHC_IP_R1	1	532.2186889648438	2	532.263673	1062.51279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.965	1	51.965	51.465	52.465	0								0	0	0	0.14741	1	18463	18463		22.736	2.3217	1		+		12762	26296	9217	9289	12435	12435					-0.015962793022254118
ESNSEDEATL	10	Unmodified	_ESNSEDEATL_					0	0	0		ENST00000487269.1_1_10:120095681-120095927:-|nuORF;ENST00000490048.1_1_10:120095054-120095927:-|nuORF;ENST00000469758.5_1_10:120085736-120095927:-|nuORF;ENSG00000165669|ENST00000369183|FAM204A	ENST00000487269.1_1_10:120095681-120095927:-|nuORF	ENST00000487269.1_1_10:120095681-120095927:-|nuORF	MSMS	A375_MHC_IP_R2	2	547.7315673828125	2	547.72784	1093.44113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.966	1	95.717	95.217	96.217	0.75045								0	0	0	0.15308	1	36081	36081		10.824	1.4765	1				12763	6977	9218	9290	12436	12436					-0.10185540245743141
ESNSHPIDV	9	Unmodified	_ESNSHPIDV_					0	0	0			REV__nc|ENSG00000146414|Q149N8-2|SHPRH	REV__nc|ENSG00000146414|Q149N8-2|SHPRH	MULTI-MSMS	A375_MHC_IP_R2	2	498.66107177734375	2	499.232896	996.451239	-0.87039	-0.00043453	-0.15658	-7.817E-05	-1.027	-0.0005127	499.2328044611235	34.15	2.2318	34.902	34.651	36.883	0.75225					88	43	4	0	0	0	0.25276	1	12434	12434		34.102	5.6156	1	67698000	+		12764	19535	9219	9291	12437	12437					-0.04712887729863269
ESNSLALVY	9	Unmodified	_ESNSLALVY_					0	0	0		nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	MULTI-SECPEP	A375_MHC_IP_R2	2	498.66107177734375	2	498.25584	994.497126	-0.71245	-0.00035498	-0.58147	-0.00028972	-1.2939	-0.0006447	498.2555334803067	34.667	0.50495	35.43	35.223	35.727	0.76338					13	9	2	0	0	0	0.47368	1	12434	12434		34.102	0	1	1539500			12765	1866	9220	9292	12438	12438					-0.00034242547633311915
ESNSRCRSY	9	Unmodified	_ESNSRCRSY_					0	0	0			REV__LUZP4|p.G86R|1|0.81|ENSG00000102021|chrX:115303332-115303332|G/A|missense_variant	REV__LUZP4|p.G86R|1|0.81|ENSG00000102021|chrX:115303332-115303332|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	551.640380859375	2	551.240729	1100.46691	-0.58728	-0.00032373	0.62425	0.00034411	0.036975	2.0382E-05	551.240912649874	33.322	0.50774	33.322	33.04	33.547	0					15	9	2	0	0	0	0.67483	1	10861	10861		10.074	3.8681	1	2428000	+		12766	17200	9221	9293	12439	12439					-0.07930924484435309
ESNYVSEHL	9	Unmodified	_ESNYVSEHL_					0	0	0		ENSG00000035681|ENST00000038176|NSMAF;nc|ENSG00000035681|Q92636-2|NSMAF	ENSG00000035681|ENST00000038176|NSMAF	ENSG00000035681|ENST00000038176|NSMAF	MULTI-MSMS	A375_MHC_IP_R2	2	539.2081298828125	2	539.246003	1076.47745	-0.92401	-0.00049827	0.91698	0.00049448	-0.0070238	-3.7875E-06	539.2463323486731	66.905	1.3242	67.642	66.932	68.256	0.73631					45	25	2	0	0	0	0.55818	1	25448	25448		16.942	8.349	1	1331900			12767	1132	9222	9294	12440	12440					-0.057726185583760525
ESPAGYGLIG	10	Unmodified	_ESPAGYGLIG_					0	0	0		ENSG00000167619|ENST00000301204|TMEM145	ENSG00000167619|ENST00000301204|TMEM145	ENSG00000167619|ENST00000301204|TMEM145	MULTI-MSMS	A375_MHC_IP_R1	1	482.642822265625	2	482.242732	962.470912	-0.31465	-0.00015174	0.2814	0.0001357	-0.033254	-1.6036E-05	482.24269463995637	98.443	0.86487	98.443	97.999	98.864	0					26	16	3	0	0	0	0.53946	1	36178	36178		25.399	8.3128	1	1266100			12768	7200	9223	9295	12441	12441					-0.011825117190710444
ESPAPKQELH	10	Unmodified	_ESPAPKQELH_					0	0	0		nc|ENSG00000140320|Q8TBE0-3|BAHD1;nc|ENSG00000140320|Q8TBE0-2|BAHD1;ENSG00000140320|ENST00000416165|BAHD1	nc|ENSG00000140320|Q8TBE0-3|BAHD1	nc|ENSG00000140320|Q8TBE0-3|BAHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	378.9369812011719	3	379.196256	1134.56694	0.22348	8.4742E-05	-0.18314	-6.9448E-05	0.040333	1.5294E-05	379.1961597864398	28.205	0.90825	28.205	27.937	28.845	0					30	17	3	0	0	0	0.78163	1	8788	8788		15.538	15.538	1	6688700			12769	5142	9224	9296	12442	12442					0.005036361209931783
ESPAPKQELH	10	Unmodified	_ESPAPKQELH_					0	0	0		nc|ENSG00000140320|Q8TBE0-3|BAHD1;nc|ENSG00000140320|Q8TBE0-2|BAHD1;ENSG00000140320|ENST00000416165|BAHD1	nc|ENSG00000140320|Q8TBE0-3|BAHD1	nc|ENSG00000140320|Q8TBE0-3|BAHD1	MULTI-MATCH	A375_MHC_IP_R2	2		3	379.196256	1134.56694	0.13125	4.9769E-05	-0.11522	-4.369E-05	0.016033	6.0795E-06	379.1961688155679	27.53	0.76068	28.208	27.843	28.604	0.67857	0.0015572	4.3468E-05	NaN	15.538	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5278500			12770	5142	9224	9296							0.005036361209931783
ESPATPVSF	9	Unmodified	_ESPATPVSF_					0	0	0		nc|ENSG00000143473|O95259-2|KCNH1;ENSG00000143473|ENST00000271751|KCNH1	nc|ENSG00000143473|O95259-2|KCNH1	nc|ENSG00000143473|O95259-2|KCNH1	MULTI-MSMS	A375_MHC_IP_R2	2	468.63653564453125	2	467.729458	933.444362	-0.70808	-0.00033119	0.50741	0.00023733	-0.20066	-9.3856E-05	467.7295581425536	81.512	0.65573	82.255	82.029	82.684	0.74293					28	12	3	0	0	0	0.55818	1	30890	30890		16.942	0	1	4917800			12771	5396	9225	9297	12443	12443					-0.025022006104222783
ESPDEHEEY	9	Unmodified	_ESPDEHEEY_					0	0	0			REV__SLITRK6|p.G281E|1|0.18|ENSG00000184564|chr13:85795667-85795667|C/T|missense_variant	REV__SLITRK6|p.G281E|1|0.18|ENSG00000184564|chr13:85795667-85795667|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	568.1143798828125	2	567.714733	1133.41491	0.16496	9.3648E-05	-0.09073	-5.1509E-05	0.074227	4.214E-05	567.7147959197825	45.036	0.50718	45.036	44.777	45.284	0					20	9	3	0	0	0	0.55359	1	15743	15743		21.747	0	1	3465100	+		12772	28012	9226	9298	12444	12444					-0.14645809417220335
ESPEDHIGVQ	10	Unmodified	_ESPEDHIGVQ_					0	0	0		nc|ENSG00000151239|Q12792-3|TWF1	nc|ENSG00000151239|Q12792-3|TWF1	nc|ENSG00000151239|Q12792-3|TWF1	MULTI-MSMS	A375_MHC_IP_R2	2	556.6580810546875	2	555.756735	1109.49892	-0.88345	-0.00049098	-0.20758	-0.00011537	-1.091	-0.00060635	555.7565715236021	44.943	1.017	45.712	45.188	46.205	0.7691					41	19	3	0	0	0	0.70793	1	16862	16862		8.7454	8.7454	1	4725000			12773	14677	9227	9299	12445	12445					-0.05145233529651705
ESPEPLPGGKH	11	Unmodified	_ESPEPLPGGKH_					0	0	0		SH2D7|p.R185Pfs*41|1|0.57|ENSG00000183476|chr15:78098499-78098500|-/C|frameshift_variant	SH2D7|p.R185Pfs*41|1|0.57|ENSG00000183476|chr15:78098499-78098500|-/C|frameshift_variant	SH2D7|p.R185Pfs*41|1|0.57|ENSG00000183476|chr15:78098499-78098500|-/C|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	574.6907348632812	2	574.290745	1146.56694	-0.38077	-0.00021867	-0.083211	-4.7787E-05	-0.46398	-0.00026646	574.290686184678	24.317	1.5702	24.317	23.483	25.053	0					65	30	3	0	0	0	0.53345	1	6708	6708		28.495	4.4739	1	10112000			12774	29152	9228	9300	12446	12446					-0.00048363879000135057
ESPEPLPGGKH	11	Unmodified	_ESPEPLPGGKH_					0	0	0		SH2D7|p.R185Pfs*41|1|0.57|ENSG00000183476|chr15:78098499-78098500|-/C|frameshift_variant	SH2D7|p.R185Pfs*41|1|0.57|ENSG00000183476|chr15:78098499-78098500|-/C|frameshift_variant	SH2D7|p.R185Pfs*41|1|0.57|ENSG00000183476|chr15:78098499-78098500|-/C|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	383.59625244140625	3	383.196256	1146.56694	-0.38248	-0.00014657	0.17654	6.7649E-05	-0.20594	-7.8917E-05	383.1963234213576	23.829	1.7799	24.459	23.521	25.301	0.63014					67	34	2	0	0	0	0.60848	2	7475	7475;7586		18.34	0	1	12867000			12775	29152	9228	9300	12447;12448	12447					-0.00048363879000135057
ESPFRDKLT	9	Unmodified	_ESPFRDKLT_					0	0	0		ENST00000529980.5_1_11:47159254-47177376:+|nuORF	ENST00000529980.5_1_11:47159254-47177376:+|nuORF	ENST00000529980.5_1_11:47159254-47177376:+|nuORF	MSMS	A375_MHC_IP_R2	2	364.94512939453125	3	364.860984	1091.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.474	1	25.118	24.618	25.618	0.64368								0	0	0	0.15486	1	8043	8043		6.6304	0	1				12776	13141	9229	9301	12449	12449					0.01900537609321873
ESPGFPEKY	9	Unmodified	_ESPGFPEKY_					0	0	0		nc|ENSG00000118257|O60462-2|NRP2;ENSG00000118257|ENST00000357785|NRP2;nc|ENSG00000118257|O60462|NRP2;nc|ENSG00000118257|O60462-4|NRP2;nc|ENSG00000118257|O60462-5|NRP2;nc|ENSG00000118257|O60462-6|NRP2	nc|ENSG00000118257|O60462-2|NRP2	nc|ENSG00000118257|O60462-2|NRP2	MULTI-MSMS	A375_MHC_IP_R1	1	527.7363891601562	2	527.248015	1052.48148	-0.85532	-0.00045097	-0.79452	-0.00041891	-1.6498	-0.00086987	527.2469146557617	29.945	0.69428	29.945	29.657	30.351	0					20	13	2	0	0	0	0.60101	1	9532	9532		14.838	2.5976	1	5451700			12777	3534	9230	9302	12450	12450					-0.042665290646709764
ESPGPPGI	8	Unmodified	_ESPGPPGI_					0	0	0			REV__ENST00000555562.1_1_14:89883856-89885534:+|nuORF	REV__ENST00000555562.1_1_14:89883856-89885534:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	376.9679870605469	2	377.192511	752.370469	0.17411	6.5672E-05	-0.25506	-9.6207E-05	-0.080953	-3.0535E-05	377.19264717887444	30.522	0.40282	31.241	31.064	31.467	0.71857					12	7	2	0	0	0	0.97144	1	10669	10669		5.2307	0	1	1495400	+		12778	26099	9231	9303	12451	12451					-0.01562123982103003
ESPHPPLPA	9	Unmodified	_ESPHPPLPA_					0	0	0		ENST00000474112.5_1_3:63898274-63982174:+|nuORF;ENSG00000163635|ENST00000674280|ATXN7;nc|ENSG00000163635|O15265-2|ATXN7;nc|ENSG00000163635|O15265-3|ATXN7;ENST00000484668.1_1_3:63973932-63976536:+|nuORF	ENST00000474112.5_1_3:63898274-63982174:+|nuORF	ENST00000474112.5_1_3:63898274-63982174:+|nuORF	MSMS	A375_MHC_IP_R2	2	472.6892395019531	2	472.745442	943.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.404	1	42.178	41.678	42.678	0.77451								0	0	0	0.15486	1	15362	15362		13.508	0.97634	1				12779	6698	9232	9304	12452	12452					0.00233211863383076
ESPKKNTLW	9	Unmodified	_ESPKKNTLW_					0	0	0		nc|ENSG00000072803|Q9UKB1-3|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-3|FBXW11	nc|ENSG00000072803|Q9UKB1-3|FBXW11	MULTI-SECPEP	A375_MHC_IP_R2	2	551.1607666015625	2	551.798206	1101.58186	-0.71183	-0.00039279	-0.9001	-0.00049667	-1.6119	-0.00088946	551.7983512477813	98.669	0.40603	99.429	99.15	99.556	0.75977					12	7	2	0	0	0	0.5212	1	37444	37444		32.786	19.743	1	2680600			12780	1548	9233	9305	12453	12453					0.03513127989003806
ESPLPAGEQSP	11	Unmodified	_ESPLPAGEQSP_					0	0	0			REV__nc|ENSG00000181409|Q6ZMQ8-3|AATK	REV__nc|ENSG00000181409|Q6ZMQ8-3|AATK	MSMS	A375_MHC_IP_R1	1	556.2178955078125	2	556.266936	1110.51932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.858	1	27.858	27.358	28.358	0								0	0	0	0.16138	1	8509	8509		11.495	0.67078	1		+		12781	21648	9234	9306	12454	12454					-0.03152062869844485
ESPLQTRLF	9	Unmodified	_ESPLQTRLF_					0	0	0		ENST00000558061.1_1_15:48938242-48938584:+|nuORF	ENST00000558061.1_1_15:48938242-48938584:+|nuORF	ENST00000558061.1_1_15:48938242-48938584:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	364.60235595703125	3	364.201229	1089.58186	0.13161	4.7931E-05	2.6113	0.00095104	2.7429	0.00099897	364.2023118327522	34.387	0.40427	34.387	34.203	34.608	0					16	7	3	0	0	0	0.54799	1	11355	11355		17.443	2.1942	1	3961000			12782	13461	9235	9307	12455	12455					0.04065127988974382
ESPMKVSSFY	10	Unmodified	_ESPMKVSSFY_					0	0	0			REV__ZFP82|p.G136E|1|0.4|ENSG00000181007|chr19:36393933-36393933|C/T|missense_variant	REV__ZFP82|p.G136E|1|0.4|ENSG00000181007|chr19:36393933-36393933|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	587.7111206054688	2	587.776082	1173.53761	-0.45868	-0.0002696	2.4037	0.0014128	1.945	0.0011432	587.7775953852732	41.873	0.30968	41.873	41.622	41.932	0					8	5	2	0	0	0	0.50967	1	14385	14385		27.629	2.2295	1	930570	+		12783	21632	9236	9308	12456	12456					-0.042216442194785486
ESPNGIISHY	10	Unmodified	_ESPNGIISHY_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MULTI-MSMS	A375_MHC_IP_R2	2	560.1829223632812	2	558.769645	1115.52474	-1.052	-0.00058785	-0.32997	-0.00018438	-1.382	-0.00077223	558.7696158181534	24.492	1.0173	25.136	24.907	25.924	0.64368					52	19	4	0	0	0	0.70496	1	7975	7975		10.074	0.6908	1	163730000			12784	1177	9237	9309	12457	12457					-0.028403392873769917
ESPPEINT	8	Unmodified	_ESPPEINT_					0	0	0		CON__P02668	CON__P02668	CON__P02668	MULTI-SECPEP	A375_MHC_IP_R2	2	444.11083984375	2	443.711265	885.407977	-0.96587	-0.00042857	0.81883	0.00036332	-0.14704	-6.5243E-05	443.7114811313128	36.881	0.60919	37.652	37.359	37.968	0.7709					16	11	2	0	0	0	0.73227	1	13503	13503		30.637	11.38	1	1557200		+	12785	583	9238	9310	12458	12458					-0.03931077507138525
ESPPHPARVE	10	Unmodified	_ESPPHPARVE_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-SECPEP	A375_MHC_IP_R2	2	373.2486572265625	3	373.524484	1117.55162	0.037828	1.413E-05	-0.29024	-0.00010841	-0.25241	-9.4283E-05	373.52431229829256	24.598	0.35424	25.242	25.06	25.414	0.64368					12	6	3	0	0	0	0.91556	1	8053	8053		3.3196	0	1	2441800			12786	9060	9239	9311	12459	12459					-0.0024523067620521033
ESPPPPPRSPS	11	Unmodified	_ESPPPPPRSPS_					0	0	0		ENSG00000142599|ENST00000400908|RERE;nc|ENSG00000142599|Q9P2R6-2|RERE	ENSG00000142599|ENST00000400908|RERE	ENSG00000142599|ENST00000400908|RERE	MULTI-MSMS	A375_MHC_IP_R2	2	574.6904296875	2	574.290745	1146.56694	-0.49644	-0.0002851	-0.13421	-7.7075E-05	-0.63065	-0.00036217	574.2905925887683	23.853	1.7794	24.483	23.368	25.148	0.63014					73	34	3	0	0	0	0.67565	1	7522	7522		17.443	3.0373	1	6700800			12787	5314	9240	9312	12460	12460					-0.0004836387897739769
ESPPSLFSL	9	Unmodified	_ESPPSLFSL_					0	0	0			REV__ENST00000524608.5_1_11:7695569-7695638:-|nuORF	REV__ENST00000524608.5_1_11:7695569-7695638:-|nuORF	MSMS	A375_MHC_IP_R1	1	488.6526794433594	2	488.752933	975.491313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.047	1	81.047	80.547	81.547	0								0	0	0	0.089973	1	29614	29614		44.407	3.9584	1		+		12788	25758	9241	9313	12461	12461					0.002586589407201245
ESPPVRECH	9	Unmodified	_ESPPVRECH_					0	0	0			REV__ENSG00000172901|ENST00000357872|LVRN	REV__ENSG00000172901|ENST00000357872|LVRN	MULTI-MSMS	A375_MHC_IP_R2	2	527.19140625	2	527.242741	1052.47093	-0.76216	-0.00040185	0.24121	0.00012718	-0.52095	-0.00027467	527.243081186918	23.576	0.86386	24.206	23.979	24.843	0.63014					32	16	4	0	0	0	0.51106	1	7709	7709		19.257	7.6167	1	60506000	+		12789	21179	9242	9314	12462	12462					-0.05320834990743606
ESPQEGTVSW	10	Unmodified	_ESPQEGTVSW_					0	0	0		ABCC12|p.T778S|1|0.35|ENSG00000140798|chr16:48108479-48108479|T/A|missense_variant	ABCC12|p.T778S|1|0.35|ENSG00000140798|chr16:48108479-48108479|T/A|missense_variant	ABCC12|p.T778S|1|0.35|ENSG00000140798|chr16:48108479-48108479|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	374.6045837402344	3	373.836616	1118.48802	0.050142	1.8745E-05	0.28294	0.00010577	0.33308	0.00012452	373.8366597670141	23.713	0.25382	23.713	23.584	23.838	0					6	4	2	0	0	0	0.93799	1	6557	6557		3.5871	2.9602	1	1850100			12790	12	9243	9315	12463	12463					-0.06648635903934519
ESPRLNEAKSP	11	Unmodified	_ESPRLNEAKSP_					0	0	0			REV__ENSG00000148384|ENST00000371712|INPP5E	REV__ENSG00000148384|ENST00000371712|INPP5E	MSMS	A375_MHC_IP_R1	1	409.9226379394531	3	409.882448	1226.62551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.009	1	23.009	22.509	23.509	0								0	0	0	0.16147	1	6241	6241		11.065	1.301	1		+		12791	19627	9244	9316	12464	12464					0.02126692695469501
ESPSPYELN	9	Unmodified	_ESPSPYELN_					0	0	0			REV__nc|ENSG00000086827|O43264-2|ZW10	REV__nc|ENSG00000086827|O43264-2|ZW10	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1793823242188	2	518.235104	1034.45566	-1.0024	-0.0005195	0.2606	0.00013505	-0.74184	-0.00038445	518.2352278042838	49.515	0.81212	50.272	49.995	50.807	0.75737					34	15	3	0	0	0	0.67483	1	18700	18700		10.074	10.074	1	10053000	+		12792	16860	9245	9317	12465	12465					-0.06019423306929639
ESPTLMPEGE	10	Unmodified	_ESPTLMPEGE_					0	0	0			REV__nc|ENSG00000020181|Q96PE1-2|ADGRA2	REV__nc|ENSG00000020181|Q96PE1-2|ADGRA2	MULTI-SECPEP	A375_MHC_IP_R1	1	544.6512451171875	2	545.242072	1088.46959	-0.60661	-0.00033075	2.3892	0.0013027	1.7826	0.00097193	545.2431616993262	34.293	0.50578	34.293	34.052	34.557	0					12	9	2	0	0	0	0.72086	1	11323	11323		24.021	0.87215	1	1588300	+		12793	27093	9246	9318	12466	12466					-0.07110513870156865
ESQCCCVSSY	10	Unmodified	_ESQCCCVSSY_					0	0	0			REV__nc|ENSG00000186960|Q86U37|LINC01551	REV__nc|ENSG00000186960|Q86U37|LINC01551	MULTI-MSMS	A375_MHC_IP_R2	2	555.1781616210938	2	554.690835	1107.36712	-0.76283	-0.00042313	3.7528	0.0020816	2.9899	0.0016585	554.6936299772034	82.958	0.50452	83.697	83.544	84.049	0.73962					15	9	2	0	0	0	0.70496	1	31462	31462		10.074	0.72649	1	1238800	+		12794	24390	9247	9319	12467	12467					-0.18227246204924086
ESQGRGAPKI	10	Unmodified	_ESQGRGAPKI_					0	0	0			REV__ENSG00000249715|ENST00000624922|FER1L5	REV__ENSG00000249715|ENST00000624922|FER1L5	MULTI-SECPEP	A375_MHC_IP_R2	2	522.1846923828125	2	521.78563	1041.55671	-0.84512	-0.00044097	0.029895	1.5599E-05	-0.81523	-0.00042537	521.7855690216056	38.037	0.6153	38.812	38.534	39.149	0.77451					26	11	4	0	0	0	0.63381	1	14017	14017		31.268	19.028	1	7443400	+		12795	22838	9248	9320	12468	12468					0.037590731864384
ESQISGTLFPW	11	Unmodified	_ESQISGTLFPW_					0	0	0		tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1	tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1	tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	421.96612548828125	3	422.211794	1263.61355	-0.14343	-6.056E-05	-2.473	-0.0010441	-2.6164	-0.0011047	422.21046919703775	30.631	0.4535	31.35	31.114	31.567	0.71857					17	8	3	0	0	0	0.98968	1	10817	10817		9.7643	6.6303	1	2490500			12796	29935	9249	9321	12469	12469					-0.007709240476970081
ESQISGTLFPW	11	Unmodified	_ESQISGTLFPW_					0	0	0		tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1	tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1	tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		3	422.211794	1263.61355	-0.035067	-1.4806E-05	-2.3728	-0.0010018	-2.4078	-0.0010166	422.210371788858	31.323	0.50693	31.323	31.109	31.616	0	-0.013117	5.4991E-05	NaN	9.7643	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2535500			12797	29935	9249	9321							-0.007709240476970081
ESQIVGVWMV	10	Unmodified	_ESQIVGVWMV_					0	0	0		ENST00000375911.1_1_6:31627787-31628093:-|nuORF	ENST00000375911.1_1_6:31627787-31628093:-|nuORF	ENST00000375911.1_1_6:31627787-31628093:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	573.658935546875	2	574.294442	1146.57433	-0.17256	-9.9102E-05	-0.40753	-0.00023404	-0.5801	-0.00033315	574.2942015007216	57.224	0.40769	57.224	57.007	57.415	0					11	7	2	0	0	0	0.88918	1	20588	20588		13.042	10.983	1	1301500			12798	11280	9250	9322	12470	12470					0.00690652397042868
ESQKEKRKRRW	11	Unmodified	_ESQKEKRKRRW_					0	0	0			REV__nc|ENSG00000122223|Q9BZW8-4|CD244	REV__nc|ENSG00000122223|Q9BZW8-4|CD244	MSMS	A375_MHC_IP_R2	2	765.9359741210938	2	765.934222	1529.85389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.175	1	80.92	80.42	81.42	0.74474								0	0	0	0.16334	1	30437	30437		1.3295	0	1		+		12799	18195	9251	9323	12471	12471					0.11015910062997136
ESQKFKPL	8	Unmodified	_ESQKFKPL_					0	0	0			REV__ATRX|p.S719F|1|0.16|ENSG00000085224|chrX:77683100-77683100|G/A|missense_variant	REV__ATRX|p.S719F|1|0.16|ENSG00000085224|chrX:77683100-77683100|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	488.46978759765625	2	488.776742	975.538931	-0.28497	-0.00013929	-0.27802	-0.00013589	-0.56299	-0.00027517	488.77660408907826	57.73	0.45691	57.73	57.467	57.923	0					10	8	2	0	0	0	0.972	1	20766	20766		7.9102	5.6074	1	774800	+		12800	15484	9252	9324	12472	12472					0.05018357931567152
ESQNGNIQGY	10	Unmodified	_ESQNGNIQGY_					0	0	0		nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENSG00000146555|ENST00000404826|SDK1;ENST00000476701.5_1_7:4169443-4308379:+|nuORF	nc|ENSG00000146555|Q7Z5N4-3|SDK1	nc|ENSG00000146555|Q7Z5N4-3|SDK1	MULTI-MSMS	A375_MHC_IP_R1	1	555.1871948242188	2	555.246535	1108.47852	-0.44091	-0.00024481	-0.016031	-8.9009E-06	-0.45694	-0.00025371	555.2460958282276	89.02	0.55748	89.02	88.663	89.221	0					25	10	3	0	0	0	0.70496	1	32651	32651		10.074	0	1	2418000			12801	5628	9253	9325	12473	12473					-0.07138404189458925
ESQNNYCAQH	10	Unmodified	_ESQNNYCAQH_					0	0	0			REV__tr|U7T211|U7T211_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00427PE=4SV=1	REV__tr|U7T211|U7T211_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00427PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	596.6651611328125	2	597.235644	1192.45673	-0.43758	-0.00026134	1.2328	0.00073628	0.79523	0.00047494	597.236359044026	61.357	0.35831	61.357	61.227	61.585	0					9	6	2	0	0	0	0.90513	1	22118	22118		8.1555	4.559	1	1332100	+		12802	28715	9254	9326	12474	12474					-0.13179532209710487
ESQSNPSGPAW	11	Unmodified	_ESQSNPSGPAW_					0	0	0		LONRF2|p.P689S|1|0.21|ENSG00000170500|chr2:100286919-100286919|G/A|missense_variant	LONRF2|p.P689S|1|0.21|ENSG00000170500|chr2:100286919-100286919|G/A|missense_variant	LONRF2|p.P689S|1|0.21|ENSG00000170500|chr2:100286919-100286919|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	580.6536865234375	2	580.25436	1158.49417	-0.53794	-0.00031214	-0.34595	-0.00020074	-0.88389	-0.00051288	580.2538460880421	49.922	0.66092	50.676	50.294	50.955	0.75406					19	12	2	0	0	0	0.57844	1	18783	18783		24.991	0.97039	1	2453200			12803	14309	9255	9327	12475	12475					-0.07874117672417924
ESQTDRSTV	9	Unmodified	_ESQTDRSTV_					0	0	0			REV__nc|ENSG00000163689|Q6ZVT6-2|CFAP20DC	REV__nc|ENSG00000163689|Q6ZVT6-2|CFAP20DC	MULTI-MSMS	A375_MHC_IP_R2	2	511.6387023925781	2	511.741085	1021.46762	-0.95609	-0.00048927	-0.44632	-0.0002284	-1.4024	-0.00071767	511.7406660368109	50.179	1.1685	50.933	50.142	51.311	0.75406					41	22	4	0	0	0	0.64808	1	18987	18987		11.64	11.64	1	7543300	+		12804	20399	9256	9328	12476	12476					-0.042258065637497566
ESQVVNRNSLF	11	Unmodified	_ESQVVNRNSLF_					0	0	0			REV__ENST00000478330.1_1_1:171757000-171759833:+|nuORF	REV__ENST00000478330.1_1_1:171757000-171759833:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	431.2885437011719	3	431.557964	1291.65206	-0.46638	-0.00020127	-0.34895	-0.00015059	-0.81533	-0.00035186	431.5578872677758	41.577	1.0185	41.577	41.114	42.132	0					25	19	2	0	0	0	0.99681	1	14211	14211		4.4062	0	1	2992000	+		12805	16190	9257	9329	12477	12477					0.017903815868066886
ESQWWIKLRNP	11	Unmodified	_ESQWWIKLRNP_					0	0	0			REV__ENSG00000091136|ENST00000222399|LAMB1	REV__ENSG00000091136|ENST00000222399|LAMB1	MSMS	A375_MHC_IP_R2	2	728.9771118164062	2	728.888418	1455.76228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.3	1	128.54	128.04	129.04	0.23946								0	0	0	0.1628	1	50366	50366		4.897	1.3005	1		+		12806	16944	9258	9330	12478	12478					0.05263226645843133
ESRDDRCR	8	Unmodified	_ESRDDRCR_					0	0	0		ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MSMS	A375_MHC_IP_R2	2	518.631591796875	2	518.733071	1035.45159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.373	1	61.118	60.618	61.618	0.74503								0	0	0	0.16876	1	22859	22859		12.532	2.4576	1				12807	13012	9259	9331	12479	12479					-0.06471791281660444
ESRDGSVIAYR	11	Unmodified	_ESRDGSVIAYR_					0	0	0		ENST00000547892.1_1_19:49122178-49122400:-|nuORF	ENST00000547892.1_1_19:49122178-49122400:-|nuORF	ENST00000547892.1_1_19:49122178-49122400:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	627.2181396484375	2	626.817658	1251.62076	-1.2032	-0.0007542	0.82494	0.00051709	-0.37828	-0.00023711	626.8178227713271	33.409	0.6581	34.161	33.942	34.6	0.75225					22	12	3	0	0	0	0.72801	1	11989	11989		10.8	0.64894	1	4029100			12808	13349	9260	9332	12480	12480					0.005018085526899085
ESREGLPNF	9	Unmodified	_ESREGLPNF_					0	0	0			REV__ENST00000447395.5_1_7:112407666-112407765:-|nuORF	REV__ENST00000447395.5_1_7:112407666-112407765:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	524.677001953125	2	524.756538	1047.49852	-0.71913	-0.00037737	-0.21704	-0.00011389	-0.93616	-0.00049126	524.7565046798602	36.82	0.40337	36.82	36.592	36.996	0					10	7	2	0	0	0	0.43185	1	12413	12413		23.148	3.7865	1	2699900	+		12809	24871	9261	9333	12481	12481					-0.023326084588461526
ESREGLPNF	9	Unmodified	_ESREGLPNF_					0	0	0			REV__ENST00000447395.5_1_7:112407666-112407765:-|nuORF	REV__ENST00000447395.5_1_7:112407666-112407765:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	524.6767578125	2	524.756538	1047.49852	-0.64295	-0.00033739	-0.29527	-0.00015495	-0.93822	-0.00049234	524.7564551457845	36.044	0.56146	36.807	36.537	37.099	0.76338					14	10	2	0	0	0	0.62767	1	13135	13135		23.148	3.8914	1	3547000	+		12810	24871	9261	9333	12482	12482					-0.023326084588461526
ESREHRPHT	9	Unmodified	_ESREHRPHT_					0	0	0		ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	MULTI-SECPEP	A375_MHC_IP_R1	1	383.9231872558594	3	383.523366	1147.54827	0.0075853	2.9091E-06	-0.54824	-0.00021026	-0.54065	-0.00020735	383.5232014856543	23.61	0.76192	23.61	23.381	24.143	0					30	14	4	0	0	0	0.67483	1	6529	6529		10.151	2.2052	1	24189000			12811	9738	9262	9334	12483	12483					-0.01960480730213021
ESREHRPHT	9	Unmodified	_ESREHRPHT_					0	0	0		ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	MULTI-SECPEP	A375_MHC_IP_R2	2	383.9232177734375	3	383.523366	1147.54827	-0.45509	-0.00017454	-0.76476	-0.0002933	-1.2198	-0.00046784	383.5232855973517	22.8	0.66413	23.43	22.959	23.623	0.63014					29	12	3	0	0	0	0.74412	1	7205	7205		6.6304	0	1	8443100			12812	9738	9262	9334	12484	12484					-0.01960480730213021
ESREYIPEIVF	11	Unmodified	_ESREYIPEIVF_					0	0	0		ENST00000541653.2_1_14:22054224-22054383:-|nuORF	ENST00000541653.2_1_14:22054224-22054383:-|nuORF	ENST00000541653.2_1_14:22054224-22054383:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	691.7745971679688	2	691.353542	1380.69253	-0.80583	-0.00055712	-0.78306	-0.00054137	-1.5889	-0.0010985	691.3528345726813	86.558	0.50692	86.558	86.224	86.73	0					28	9	4	0	0	0	0.73672	1	31631	31631		2.4985	0	1	16966000			12813	13289	9263	9335	12485	12485					0.017413031865316952
ESREYSFRQKE	11	Unmodified	_ESREYSFRQKE_					0	0	0			REV__HIVEP1|p.G2174E|1|0.52|ENSG00000095951|chr6:12161472-12161472|G/A|missense_variant	REV__HIVEP1|p.G2174E|1|0.52|ENSG00000095951|chr6:12161472-12161472|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	486.6624755859375	3	486.903912	1457.68991	-0.63973	-0.00031149	-0.10245	-4.9882E-05	-0.74218	-0.00036137	487.2381252616869	32.575	0.55861	33.312	33.01	33.569	0.73691					19	10	2	0	0	0	0.99916	1	11494	11494		2.4348	2.4348	1	6806700	+		12814	26744	9264	9336	12486	12486					-0.020631522183975903
ESREYSFRQKE	11	Unmodified	_ESREYSFRQKE_					0	0	0			REV__HIVEP1|p.G2174E|1|0.52|ENSG00000095951|chr6:12161472-12161472|G/A|missense_variant	REV__HIVEP1|p.G2174E|1|0.52|ENSG00000095951|chr6:12161472-12161472|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	486.903912	1457.68991	-0.33293	-0.0001621	-0.076668	-3.733E-05	-0.40959	-0.00019943	486.90389311874765	33.176	0.60925	33.176	32.938	33.547	0	-0.067905	1.9431E-05	NaN	2.4348	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6328300	+		12815	26744	9264	9336							-0.020631522183975903
ESRFQEKY	8	Unmodified	_ESRFQEKY_					0	0	0			REV__ENSG00000162814|ENST00000366933|SPATA17	REV__ENSG00000162814|ENST00000366933|SPATA17	MULTI-SECPEP	A375_MHC_IP_R2	2	363.2452087402344	3	362.845334	1085.51417	-0.26333	-9.555E-05	0.071488	2.5939E-05	-0.19185	-6.9611E-05	362.84525284501774	33.091	0.56082	33.843	33.635	34.196	0.75225					20	10	3	0	0	0	0.95423	1	11841	11841		9.3831	9.3831	1	5881300	+		12816	20310	9265	9337	12487	12487					-0.025163219417891014
ESRIVVPEIK	10	Unmodified	_ESRIVVPEIK_					0	0	0		nc|ENSG00000110931|Q96RR4-7|CAMKK2;nc|ENSG00000110931|Q96RR4-6|CAMKK2;nc|ENSG00000110931|Q96RR4-5|CAMKK2;nc|ENSG00000110931|Q96RR4-2|CAMKK2;nc|ENSG00000110931|Q96RR4-3|CAMKK2;nc|ENSG00000110931|Q96RR4-4|CAMKK2;ENSG00000110931|ENST00000404169|CAMKK2	nc|ENSG00000110931|Q96RR4-7|CAMKK2	nc|ENSG00000110931|Q96RR4-7|CAMKK2	MULTI-MSMS	A375_MHC_IP_R1	1	585.7474975585938	2	585.348063	1168.68157	-0.6119	-0.00035817	0.14248	8.3399E-05	-0.46942	-0.00027477	585.347915276605	145.13	0.62537	145.13	144.82	145.45	0					63	28	3	0	0	0	0.72078	1	55576	55576		2.9952	0	1	686580			12817	14541	9266	9338	12488	12488					0.10397945602926484
ESRIVVPEIK	10	Unmodified	_ESRIVVPEIK_					0	0	0		nc|ENSG00000110931|Q96RR4-7|CAMKK2;nc|ENSG00000110931|Q96RR4-6|CAMKK2;nc|ENSG00000110931|Q96RR4-5|CAMKK2;nc|ENSG00000110931|Q96RR4-2|CAMKK2;nc|ENSG00000110931|Q96RR4-3|CAMKK2;nc|ENSG00000110931|Q96RR4-4|CAMKK2;ENSG00000110931|ENST00000404169|CAMKK2	nc|ENSG00000110931|Q96RR4-7|CAMKK2	nc|ENSG00000110931|Q96RR4-7|CAMKK2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	585.348063	1168.68157	-0.6119	-0.00035817	0.14248	8.3399E-05	-0.46942	-0.00027477	585.347915276605	145.13	0.62537	145.13	144.82	145.45	0	-0.0067699	0.00019003	NaN	2.9952	63	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	686580			12818	14541	9266	9338							0.10397945602926484
ESRKFLKSRE	10	Unmodified	_ESRKFLKSRE_					0	0	0		ENSG00000153975|ENST00000368576|ZUP1;ENST00000471919.1_1_6:116981518-116989864:-|nuORF	ENSG00000153975|ENST00000368576|ZUP1	ENSG00000153975|ENST00000368576|ZUP1	MULTI-MSMS	A375_MHC_IP_R2	2	640.759033203125	2	640.359493	1278.70443	-0.71294	-0.00045654	-0.37473	-0.00023996	-1.0877	-0.0006965	640.3593485420613	131.84	1.7302	132.03	131.34	133.07	0.18953					71	33	3	0	0	0	0.71653	1	51770	51770		4.897	0	1	20542000			12819	6052	9267	9339	12489	12489					0.07622964720439995
ESRKYPLEV	9	Unmodified	_ESRKYPLEV_					0	0	0			REV__ENSG00000166004|ENST00000325212|CEP295	REV__ENSG00000166004|ENST00000325212|CEP295	MULTI-MSMS	A375_MHC_IP_R2	2	374.604736328125	3	374.204751	1119.59242	0.01958	7.3268E-06	-0.24852	-9.2999E-05	-0.22894	-8.5672E-05	374.2046082124906	21.487	0.30604	22.106	22.03	22.336	0.61932					9	5	2	0	0	0	0.71902	1	6801	6801		5.2969	0.76802	1	1729500	+		12820	20642	9268	9340	12490	12490					0.03741110643431966
ESRLFWFL	8	Unmodified	_ESRLFWFL_					0	0	0			REV__ENSG00000105851|ENST00000496166|PIK3CG	REV__ENSG00000105851|ENST00000496166|PIK3CG	MULTI-MSMS	A375_MHC_IP_R1	1	549.6915893554688	2	549.292559	1096.57057	-0.62809	-0.00034501	-1.0467	-0.00057492	-1.6747	-0.00091993	549.2921340256653	129.12	0.35757	129.12	128.94	129.3	0					10	6	2	0	0	0	0.68907	1	49671	49671		38.151	6.0342	1	10249000	+		12821	17413	9269	9341	12491	12491					0.026143506855078158
ESRLFWFL	8	Unmodified	_ESRLFWFL_					0	0	0			REV__ENSG00000105851|ENST00000496166|PIK3CG	REV__ENSG00000105851|ENST00000496166|PIK3CG	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	549.292559	1096.57057	-0.62809	-0.00034501	-1.0467	-0.00057492	-1.6747	-0.00091993	549.2921340256653	129.12	0.35757	129.12	128.94	129.3	0	-0.00068035	-0.00051598	NaN	38.151	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10249000	+		12822	17413	9269	9341							0.026143506855078158
ESRLFWFL	8	Unmodified	_ESRLFWFL_					0	0	0			REV__ENSG00000105851|ENST00000496166|PIK3CG	REV__ENSG00000105851|ENST00000496166|PIK3CG	MULTI-MATCH	A375_MHC_IP_R2	2		2	549.292559	1096.57057	-0.84093	-0.00046192	-0.30564	-0.00016789	-1.1466	-0.00062981	549.2922373793907	128.88	0.35402	129.12	128.91	129.26	0.23946	0.00068035	0.00029809	NaN	38.151	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5123300	+		12823	17413	9269	9341							0.026143506855078158
ESRLRKDLL	9	Unmodified	_ESRLRKDLL_					0	0	0			REV__ENSG00000273749|ENST00000617928|CYFIP1	REV__ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	A375_MHC_IP_R2	2	377.62774658203125	3	377.227779	1128.66151	-0.25591	-9.6535E-05	-0.038279	-1.444E-05	-0.29419	-0.00011097	377.22761194423543	25.805	0.76253	26.465	26.094	26.857	0.65992					21	14	2	0	0	0	0.54799	1	8676	8676		17.443	0.39407	1	3141100	+		12824	22953	9270	9342	12492	12492					0.10232194662989968
ESRLSITYNHT	11	Unmodified	_ESRLSITYNHT_					0	0	0			REV__nc|ENSG00000189367|Q6ZU52-2|KIAA0408	REV__nc|ENSG00000189367|Q6ZU52-2|KIAA0408	MULTI-SECPEP	A375_MHC_IP_R2	2	441.1296081542969	3	440.889603	1319.64698	-0.5278	-0.0002327	-0.53649	-0.00023653	-1.0643	-0.00046924	440.88933446671535	40.813	0.40811	41.588	41.335	41.743	0.77451					12	7	2	0	0	0	0.9847	1	15058	15058		10.527	8.2747	1	3168400	+		12825	22151	9271	9343	12493	12493					-5.922275818193157E-05
ESRNSIIY	8	Unmodified	_ESRNSIIY_					0	0	0			REV__ENST00000502426.5_1_17:48736553-48755440:+|nuORF	REV__ENST00000502426.5_1_17:48736553-48755440:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	491.64471435546875	2	491.253631	980.49271	-0.43781	-0.00021507	0.19686	9.671E-05	-0.24094	-0.00011836	491.25369975932256	36.971	0.70744	36.971	36.695	37.402	0					20	13	2	0	0	0	0.96266	1	12507	12507		11.64	0	1	4069500	+		12826	25498	9272	9344	12494	12494					0.0016829302948053737
ESRPPSRPKAP	11	Unmodified	_ESRPPSRPKAP_					0	0	0			REV__nc|ENSG00000168314|Q13875-2|MOBP	REV__nc|ENSG00000168314|Q13875-2|MOBP	MSMS	A375_MHC_IP_R2	2	407.9484558105469	3	407.894799	1220.66257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.388	1	60.135	59.635	60.635	0.74714								0	0	0	0.16138	1	22476	22476		6.2344	0	1		+		12827	20844	9273	9345	12495	12495					0.06106409031895055
ESRQARPTY	9	Unmodified	_ESRQARPTY_					0	0	0		nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-SECPEP	A375_MHC_IP_R2	2	369.5745849609375	3	369.856233	1106.54687	-0.026165	-9.6772E-06	0.40639	0.0001503	0.38022	0.00014063	369.8563248676189	20.744	0.55747	21.355	21.059	21.616	0.61029					15	10	2	0	0	0	0.76187	1	6525	6525		4.5289	4.5289	1	980490			12828	9061	9274	9346	12496	12496					-0.002141148189366504
ESRQHELSPD	10	Unmodified	_ESRQHELSPD_					0	0	0		nc|ENSG00000168936|A0AVI4-2|TMEM129;ENSG00000168936|ENST00000382936|TMEM129	nc|ENSG00000168936|A0AVI4-2|TMEM129	nc|ENSG00000168936|A0AVI4-2|TMEM129	MULTI-SECPEP	A375_MHC_IP_R1	1	399.2776184082031	3	399.854669	1196.54218	0.04366	1.7458E-05	-0.43738	-0.00017489	-0.39372	-0.00015743	399.8544706671564	21.651	0.60908	21.651	21.555	22.164	0					14	11	2	0	0	0	0.93799	1	5713	5713		0.12286	0	1	1098800			12829	7363	9275	9347	12497	12497					-0.048230437523670844
ESRRHSPN	8	Unmodified	_ESRRHSPN_					0	0	0			REV__nc|ENSG00000108387|O43236-8|SEPTIN4	REV__nc|ENSG00000108387|O43236-8|SEPTIN4	MSMS	A375_MHC_IP_R1	1	491.6427001953125	2	491.744296	981.47404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.571	1	64.571	64.071	65.071	0								0	0	0	0.16876	1	23366	23366		13.508	3.434	1		+		12830	17528	9276	9348	12498	12498					-0.017438238217096114
ESRRHSPN	8	Unmodified	_ESRRHSPN_					0	0	0			REV__nc|ENSG00000108387|O43236-8|SEPTIN4	REV__nc|ENSG00000108387|O43236-8|SEPTIN4	MSMS	A375_MHC_IP_R2	2	491.642333984375	2	491.744296	981.47404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.76	1	64.5	64	65	0.74022								0	0	0	0.16876	1	24177	24177		13.508	4.1248	1		+		12831	17528	9276	9348	12499	12499					-0.017438238217096114
ESRRPVIMSI	10	Unmodified	_ESRRPVIMSI_					0	0	0			REV__ENSG00000106789|ENST00000375077|CORO2A	REV__ENSG00000106789|ENST00000375077|CORO2A	MULTI-SECPEP	A375_MHC_IP_R1	1	396.1264343261719	3	396.557019	1186.64923	-0.04718	-1.8709E-05	-0.0041816	-1.6582E-06	-0.051361	-2.0368E-05	396.55717568787503	61.917	0.35949	61.917	61.737	62.097	0					9	6	2	0	0	0	0.9269	1	22393	22393		6.1918	0.89496	1	1103500	+		12832	17465	9277	9349	12500	12500					0.06336834928288226
ESRSRLLP	8	Unmodified	_ESRSRLLP_					0	0	0			REV__chr1:240406486-240438061|221|30.86|0.39|6.3|+|2|TE_info:MIR,MIR_dup15824,MIR,SINE,donor,+,240406424,240406486|None,FMN2|1	REV__chr1:240406486-240438061|221|30.86|0.39|6.3|+|2|TE_info:MIR,MIR_dup15824,MIR,SINE,donor,+,240406424,240406486|None,FMN2|1	MULTI-SECPEP	A375_MHC_IP_R1	1	478.6697082519531	2	479.277441	956.540328	-0.60351	-0.00028925	0.45438	0.00021777	-0.14914	-7.1478E-05	479.27741523909236	119.98	0.8605	119.98	119.64	120.5	0					18	16	2	0	0	0	0.972	1	44339	44339		4.3292	4.3292	1	9043000	+		12833	15674	9278	9350	12501	12501					0.06031992020336929
ESSAVHLIY	9	Unmodified	_ESSAVHLIY_					0	0	0		nc|ENSG00000188596|Q96N23-2|CFAP54;ENSG00000188596|ENST00000524981|CFAP54	nc|ENSG00000188596|Q96N23-2|CFAP54	nc|ENSG00000188596|Q96N23-2|CFAP54	MULTI-MSMS	A375_MHC_IP_R2	2	510.665283203125	2	509.763832	1017.51311	-0.9894	-0.00050436	0.2791	0.00014228	-0.7103	-0.00036208	509.7639401923236	49.917	1.8773	50.671	50.193	52.07	0.75406					98	36	5	0	0	0	0.46038	1	19036	19036		21.747	1.293	1	161150000			12834	14824	9279	9351	12502	12502					0.005054636892964481
ESSCCCPTTC	10	Unmodified	_ESSCCCPTTC_					0	0	0		ENST00000485071.2_1_7:100170790-100171357:-|nuORF	ENST00000485071.2_1_7:100170790-100171357:-|nuORF	ENST00000485071.2_1_7:100170790-100171357:-|nuORF	MSMS	A375_MHC_IP_R1	1	517.1349487304688	2	517.158313	1032.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.001	1	38.001	37.501	38.501	0								0	0	0	0.15158	1	12850	12850		14.838	9.0778	1				12835	12571	9280	9352	12503	12503					-0.21278564002432176
ESSCCCPTTC	10	Unmodified	_ESSCCCPTTC_					0	0	0		ENST00000485071.2_1_7:100170790-100171357:-|nuORF	ENST00000485071.2_1_7:100170790-100171357:-|nuORF	ENST00000485071.2_1_7:100170790-100171357:-|nuORF	MSMS	A375_MHC_IP_R1	1	517.1713256835938	2	517.158313	1032.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.485	1	38.485	37.985	38.985	0								0	0	0	0.15531	1	13060	13060		3.5965	0.70727	1				12836	12571	9280	9352	12504	12504					-0.21278564002432176
ESSCCCPTTC	10	Unmodified	_ESSCCCPTTC_					0	0	0		ENST00000485071.2_1_7:100170790-100171357:-|nuORF	ENST00000485071.2_1_7:100170790-100171357:-|nuORF	ENST00000485071.2_1_7:100170790-100171357:-|nuORF	MSMS	A375_MHC_IP_R1	1	517.13525390625	2	517.158313	1032.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.581	1	38.581	38.081	39.081	0								0	0	0	0.15531	1	13103	13103		3.5965	2.8029	1				12837	12571	9280	9352	12505	12505					-0.21278564002432176
ESSCCCPTTC	10	Unmodified	_ESSCCCPTTC_					0	0	0		ENST00000485071.2_1_7:100170790-100171357:-|nuORF	ENST00000485071.2_1_7:100170790-100171357:-|nuORF	ENST00000485071.2_1_7:100170790-100171357:-|nuORF	MSMS	A375_MHC_IP_R2	2	517.1348266601562	2	517.158313	1032.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.275	1	38.046	37.546	38.546	0.7709								0	0	0	0.15308	1	13629	13629		10.824	5.0635	1				12838	12571	9280	9352	12506	12506					-0.21278564002432176
ESSCCCPTTC	10	Unmodified	_ESSCCCPTTC_					0	0	0		ENST00000485071.2_1_7:100170790-100171357:-|nuORF	ENST00000485071.2_1_7:100170790-100171357:-|nuORF	ENST00000485071.2_1_7:100170790-100171357:-|nuORF	MSMS	A375_MHC_IP_R2	2	517.17138671875	2	517.158313	1032.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.72	1	38.494	37.994	38.994	0.77451								0	0	0	0.15531	1	13822	13822		3.5965	1.9439	1				12839	12571	9280	9352	12507	12507					-0.21278564002432176
ESSCCCPTTC	10	Unmodified	_ESSCCCPTTC_					0	0	0		ENST00000485071.2_1_7:100170790-100171357:-|nuORF	ENST00000485071.2_1_7:100170790-100171357:-|nuORF	ENST00000485071.2_1_7:100170790-100171357:-|nuORF	MSMS	A375_MHC_IP_R2	2	517.1345825195312	2	517.158313	1032.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.853	1	38.627	38.127	39.127	0.77451								0	0	0	0.1552	1	13884	13884		3.9444	1.0552	1				12840	12571	9280	9352	12508	12508					-0.21278564002432176
ESSCWTQTI	9	Unmodified	_ESSCWTQTI_					0	0	0		ENST00000415440.3_1_19:19790061-19790190:+|nuORF	ENST00000415440.3_1_19:19790061-19790190:+|nuORF	ENST00000415440.3_1_19:19790061-19790190:+|nuORF	MSMS	A375_MHC_IP_R1	1	527.7077026367188	2	527.729132	1053.44371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.52	1	59.52	59.02	60.02	0								0	0	0	0.15486	1	21410	21410		10.824	1.4765	1				12841	11678	9281	9353	12509	12509					-0.08087363321783414
ESSEEELPLTQ	11	Unmodified	_ESSEEELPLTQ_					0	0	0		nc|ENSG00000070814|Q13428-4|TCOF1	nc|ENSG00000070814|Q13428-4|TCOF1	nc|ENSG00000070814|Q13428-4|TCOF1	MULTI-SECPEP	A375_MHC_IP_R2	2	632.0706176757812	2	631.293347	1260.57214	-1.0377	-0.00065511	-2.0792	-0.0013126	-3.1169	-0.0019677	631.291848083581	49.922	0.7137	50.676	50.394	51.108	0.75406					24	13	2	0	0	0	0.9889	1	18876	18876		8.1555	0	1	3373000			12842	14479	9282	9354	12510	12510					-0.04772149597715725
ESSEESVTSDA	11	Unmodified	_ESSEESVTSDA_					0	0	0			REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549	REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549	MSMS	A375_MHC_IP_R1	1	380.82196044921875	3	380.822812	1139.44661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.704	1	23.704	23.204	24.204	0								0	0	0	0.16249	1	6566	6566		2.6312	0.72486	1		+		12843	18219	9283	9355	12511	12511					-0.11753861453917125
ESSFFPVP	8	Unmodified	_ESSFFPVP_					0	0	0		CD5L|p.S132F|1|0.25|ENSG00000073754|chr1:157834730-157834730|G/A|missense_variant	CD5L|p.S132F|1|0.25|ENSG00000073754|chr1:157834730-157834730|G/A|missense_variant	CD5L|p.S132F|1|0.25|ENSG00000073754|chr1:157834730-157834730|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	455.1455078125	2	455.221268	908.427984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.924	1	44.693	44.193	45.193	0.7691								0	0	0	0.16876	1	16381	16381		10.183	1.5901	1				12844	337	9284	9356	12512	12512					-0.02989281776513053
ESSFSPVP	8	Unmodified	_ESSFSPVP_					0	0	0		CD5L|p.G137D|1|0.37|ENSG00000073754|chr1:157834715-157834715|C/T|missense_variant;CD5L|p.G137S|1|0.33|ENSG00000073754|chr1:157834716-157834716|C/T|missense_variant;ENSG00000073754|ENST00000368174|CD5L	CD5L|p.G137D|1|0.37|ENSG00000073754|chr1:157834715-157834715|C/T|missense_variant	CD5L|p.G137D|1|0.37|ENSG00000073754|chr1:157834715-157834715|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	425.15301513671875	2	425.203076	848.391599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.589	1	54.589	54.089	55.089	0								0	0	0	0.16876	1	19500	19500		10.183	0.10947	1				12845	336	9285	9357	12513	12513					-0.03866158673224618
ESSFVTHNS	9	Unmodified	_ESSFVTHNS_					0	0	0		ENSG00000009413|ENST00000368802|REV3L;nc|ENSG00000009413|O60673-2|REV3L	ENSG00000009413|ENST00000368802|REV3L	ENSG00000009413|ENST00000368802|REV3L	MULTI-SECPEP	A375_MHC_IP_R2	2	504.624755859375	2	504.225071	1006.43559	-0.99903	-0.00050373	0.3973	0.00020033	-0.60173	-0.00030341	504.22509071387856	20.196	0.55952	20.807	20.499	21.059	0.61029					16	10	2	0	0	0	0.75164	1	6290	6290		13.906	3.0821	1	1076000			12846	968	9286	9358	12514	12514					-0.06737174246893574
ESSFWRSTDY	10	Unmodified	_ESSFWRSTDY_					0	0	0		SORCS1|p.L207F|1|0.43|ENSG00000108018|chr10:106956520-106956520|G/A|missense_variant	SORCS1|p.L207F|1|0.43|ENSG00000108018|chr10:106956520-106956520|G/A|missense_variant	SORCS1|p.L207F|1|0.43|ENSG00000108018|chr10:106956520-106956520|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	639.6747436523438	2	639.275292	1276.53603	-1.06	-0.00067761	-0.19146	-0.0001224	-1.2514	-0.00080001	639.2751210782994	60.92	0.65624	61.665	61.364	62.02	0.74503					22	12	2	0	0	0	0.6806	1	23041	23041		14.838	0.93222	1	8274400			12847	29218	9287	9359	12515	12515					-0.09117561983885025
ESSGNKLLY	9	Unmodified	_ESSGNKLLY_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-4|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MULTI-MSMS	A375_MHC_IP_R1	1	505.7419738769531	2	505.761289	1009.50803	-0.62366	-0.00031542	-2.8792	-0.0014562	-3.5028	-0.0017716	505.76135209164613	38.279	0.96947	38.279	37.505	38.475	0					32	18	3	0	0	0	0.17338	1	12774	12774		39.95	1.9757	1	3125800			12848	3771	9288	9360	12516	12516					0.0036515982667424396
ESSHCCDTNQ	10	Unmodified	_ESSHCCDTNQ_					0	0	0			REV__ENSG00000117000|ENST00000372771|RLF	REV__ENSG00000117000|ENST00000372771|RLF	MSMS	A375_MHC_IP_R1	1	562.1309204101562	2	562.192587	1122.37062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.693	1	61.693	61.193	62.193	0								0	0	0	0.15531	1	22255	22255		3.5965	0	1		+		12849	17988	9289	9361	12517	12517					-0.18566860106739114
ESSHHSGQINY	11	Unmodified	_ESSHHSGQINY_					0	0	0			REV__nc|ENSG00000263001|P78347-5|GTF2I	REV__nc|ENSG00000263001|P78347-5|GTF2I	MSMS	A375_MHC_IP_R2	2	629.7421264648438	2	629.77599	1257.53743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.932	1	91.666	91.166	92.166	0.7345								0	0	0	0.16179	1	34597	34597		9.3831	0.78985	1		+		12850	27536	9290	9362	12518	12518					-0.08103927895126617
ESSIAEWTG	9	Unmodified	_ESSIAEWTG_					0	0	0			REV__ENSG00000142661|ENST00000374434|MYOM3	REV__ENSG00000142661|ENST00000374434|MYOM3	MULTI-MSMS	A375_MHC_IP_R1	1	491.1614990234375	2	490.221997	978.429441	-0.50781	-0.00024894	0.32663	0.00016012	-0.18118	-8.8818E-05	490.2220748747765	23.372	0.30663	23.372	23.227	23.533	0					13	5	3	0	0	0	0.70307	1	6401	6401		6.7232	0.96273	1	6309000	+		12851	19318	9291	9363	12519	12519					-0.060636924784148505
ESSKTRMVKK	10	Unmodified	_ESSKTRMVKK_					0	0	0			REV__ENSG00000121898|ENST00000241305|CPXM2	REV__ENSG00000121898|ENST00000241305|CPXM2	MULTI-SECPEP	A375_MHC_IP_R1	1	399.2874450683594	3	398.56054	1192.65979	-0.4953	-0.00019741	1.0169	0.00040531	0.52163	0.0002079	398.5609339343183	38.293	0.45985	38.293	38.168	38.628	0					14	8	2	0	0	0	0.94269	1	12932	12932		3.3196	3.3196	1	2576100	+		12852	18176	9292	9364	12520	12520					0.07116817582732438
ESSLHSTTFP	10	Unmodified	_ESSLHSTTFP_					0	0	0			REV__ENST00000555447.5_1_14:81744854-81744932:-|nuORF	REV__ENST00000555447.5_1_14:81744854-81744932:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	553.661376953125	2	553.261653	1104.50875	-0.54189	-0.00029981	0.055795	3.0869E-05	-0.4861	-0.00026894	553.2614879887537	24.977	0.70964	24.977	24.852	25.562	0					42	13	4	0	0	0	0.36703	1	7203	7203		36.127	9.8589	1	175200000	+		12853	26098	9293	9365	12521	12521					-0.03932045524265959
ESSLHSTTFP	10	Unmodified	_ESSLHSTTFP_					0	0	0			REV__ENST00000555447.5_1_14:81744854-81744932:-|nuORF	REV__ENST00000555447.5_1_14:81744854-81744932:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	553.6610107421875	2	553.261653	1104.50875	-1.1249	-0.00062236	0.29595	0.00016374	-0.82893	-0.00045862	553.2615998898829	24.463	0.96603	25.107	24.907	25.873	0.64368					54	18	4	0	0	0	0.75968	1	8028	8028		22.736	0	1	96409000	+		12854	26098	9293	9365	12522	12522					-0.03932045524265959
ESSNIFDGPD	10	Unmodified	_ESSNIFDGPD_					0	0	0			REV__nc|ENSG00000163539|O75122-3|CLASP2	REV__nc|ENSG00000163539|O75122-3|CLASP2	MULTI-MSMS	A375_MHC_IP_R2	2	541.1272583007812	2	540.727643	1079.44073	-1.2107	-0.00065468	0.59986	0.00032436	-0.61087	-0.00033031	540.7277872353131	37.426	0.56185	38.197	37.968	38.53	0.7709					27	10	3	0	0	0	0.6806	2	13707	13707;13717		14.838	2.3067	1	7852600	+		12855	27318	9294	9366	12523;12524	12523					-0.09580915174956317
ESSPEGPQLLL	11	Unmodified	_ESSPEGPQLLL_					0	0	0			REV__nc|ENSG00000165810|Q6UXG8-2|BTNL9	REV__nc|ENSG00000165810|Q6UXG8-2|BTNL9	MULTI-MSMS	A375_MHC_IP_R1	1	390.9395751953125	3	390.539799	1168.59757	0.14787	5.7749E-05	0.18107	7.0713E-05	0.32894	0.00012846	390.53984037255987	31.371	0.65988	31.371	31.109	31.769	0					32	12	4	0	0	0	0.71476	1	10037	10037		15.538	0	1	21254000	+		12856	20625	9295	9367	12525	12525					0.02001369715412693
ESSPLPNLKY	10	Unmodified	_ESSPLPNLKY_					0	0	0		SVA_D_dup914|chr11:75876850-75878935:-|1.3000520484701088|0.1350535341105196|3.27|462.0|33|2|sense;SVA_D_dup1229|chr17:30522805-30524227:+|1.105592693116747|0.476847412502663|1.21|471.0|35|3|sense	SVA_D_dup914|chr11:75876850-75878935:-|1.3000520484701088|0.1350535341105196|3.27|462.0|33|2|sense	SVA_D_dup914|chr11:75876850-75878935:-|1.3000520484701088|0.1350535341105196|3.27|462.0|33|2|sense	MULTI-SECPEP	A375_MHC_IP_R2	2	574.7022094726562	2	574.303321	1146.59209	-0.4869	-0.00027963	-1.991	-0.0011435	-2.4779	-0.0014231	574.302194462003	51.746	0.5094	52.499	52.219	52.729	0.75225					19	9	3	0	0	0	0.81532	1	19509	19509		19.362	0	1	3553100			12857	29273	9296	9368	12526	12526					0.024656909235773128
ESSPNHSVF	9	Unmodified	_ESSPNHSVF_					0	0	0			REV__ATXN2|p.P495S|1|0.57|ENSG00000204842|chr12:111518411-111518411|G/A|missense_variant	REV__ATXN2|p.P495S|1|0.57|ENSG00000204842|chr12:111518411-111518411|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	502.66387939453125	2	502.227613	1002.44067	-0.5512	-0.00027683	0.10906	5.4771E-05	-0.44214	-0.00022205	502.2275786365468	30.917	0.55706	30.917	30.806	31.363	0					14	10	2	0	0	0	0.64808	1	9907	9907		11.64	1.5664	1	1281300	+		12858	15485	9297	9369	12527	12527					-0.06044870384278056
ESSPNHSVF	9	Unmodified	_ESSPNHSVF_					0	0	0			REV__ATXN2|p.P495S|1|0.57|ENSG00000204842|chr12:111518411-111518411|G/A|missense_variant	REV__ATXN2|p.P495S|1|0.57|ENSG00000204842|chr12:111518411-111518411|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	502.6455993652344	2	502.227613	1002.44067	-0.5512	-0.00027683	0.10906	5.4771E-05	-0.44214	-0.00022205	502.2275786365468	30.917	0.55706	30.917	30.806	31.363	0					14	10	2	0	0	0	0.71541	1	9865	9865		16.942	6.8684	1	1281300	+		12859	15485	9297	9369	12528	12528					-0.06044870384278056
ESSPNHSVF	9	Unmodified	_ESSPNHSVF_					0	0	0			REV__ATXN2|p.P495S|1|0.57|ENSG00000204842|chr12:111518411-111518411|G/A|missense_variant	REV__ATXN2|p.P495S|1|0.57|ENSG00000204842|chr12:111518411-111518411|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	502.6636657714844	2	502.227613	1002.44067	-0.64632	-0.0003246	0.054823	2.7534E-05	-0.5915	-0.00029707	502.227599251871	30.352	0.40571	31.071	30.86	31.266	0.71857					10	7	2	0	0	0	0.64808	1	10612	10612		11.64	0	1	1387300	+		12860	15485	9297	9369	12529	12529					-0.06044870384278056
ESSPREEEK	9	Unmodified	_ESSPREEEK_					0	0	0			REV__nc|ENSG00000113916|P41182-2|BCL6	REV__nc|ENSG00000113916|P41182-2|BCL6	MULTI-SECPEP	A375_MHC_IP_R1	1	364.57135009765625	3	364.171887	1089.49383	0.39198	0.00014275	-1.1727	-0.00042706	-0.7807	-0.00028431	364.50560324894417	45.763	0.85997	45.763	45.183	46.043	0					22	16	2	0	0	0	0.73008	1	16006	16006		8.4443	1.4072	1	3430400	+		12861	17809	9298	9370	12530	12530					-0.04733537392280596
ESSPSLSLGGF	11	Unmodified	_ESSPSLSLGGF_					0	0	0		ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	541.1875	2	540.764029	1079.5135	-0.95366	-0.0005157	0.69051	0.0003734	-0.26314	-0.0001423	540.7639994857616	44.93	1.2208	45.699	45.086	46.307	0.7691					56	23	4	0	0	0	0.31356	1	16803	16803		45.7	0	1	38816000			12862	192	9299	9371	12531	12531					-0.02307161381509104
ESSPSRSALF	10	Unmodified	_ESSPSRSALF_					0	0	0		ENSG00000112186|ENST00000229922|CAP2;nc|ENSG00000112186|P40123-2|CAP2	ENSG00000112186|ENST00000229922|CAP2	ENSG00000112186|ENST00000229922|CAP2	MSMS	A375_MHC_IP_R2	2	540.6573486328125	2	540.769645	1079.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.51	1	90.242	89.742	90.742	0.7318								0	0	0	0.15105	1	34061	34061		15.847	3.3156	1				12863	3058	9300	9372	12532	12532					-0.011843392873743142
ESSQPPPQL	9	Unmodified	_ESSQPPPQL_					0	0	0			REV__ENSG00000015285|ENST00000376701|WAS	REV__ENSG00000015285|ENST00000376701|WAS	MULTI-MSMS	A375_MHC_IP_R1	1	491.6900634765625	2	491.745639	981.476725	-0.18152	-8.9261E-05	-0.18592	-9.1423E-05	-0.36743	-0.00018068	491.7455000863092	43.407	0.5601	43.407	42.993	43.553	0					14	10	2	0	0	0	0.43185	1	14986	14986		23.148	6.2061	1	2198800	+		12864	16244	9301	9373	12533	12533					-0.014754132074131121
ESSQPPPQL	9	Unmodified	_ESSQPPPQL_					0	0	0			REV__ENSG00000015285|ENST00000376701|WAS	REV__ENSG00000015285|ENST00000376701|WAS	MULTI-MSMS	A375_MHC_IP_R2	2	491.6893310546875	2	491.745639	981.476725	-0.46184	-0.00022711	-1.0149	-0.00049907	-1.4767	-0.00072618	491.7453006930926	42.455	0.8158	43.227	42.707	43.523	0.7724					22	15	2	0	0	0	0.55818	1	15700	15700		16.942	1.6938	1	1680400	+		12865	16244	9301	9373	12534	12534					-0.014754132074131121
ESSRLQLA	8	Unmodified	_ESSRLQLA_					0	0	0			REV__ENSG00000117000|ENST00000372771|RLF	REV__ENSG00000117000|ENST00000372771|RLF	MULTI-SECPEP	A375_MHC_IP_R1	1	452.646484375	2	452.248349	902.482145	-0.30882	-0.00013966	-1.2928	-0.00058467	-1.6016	-0.00072433	452.2475436258411	94.776	1.7269	94.776	94.291	96.018	0					50	33	2	0	0	0	0.972	1	34749	34749		5.2307	0	1	2325200	+		12866	17988	9302	9374	12535	12535					0.0270031037505305
ESSRLQLA	8	Unmodified	_ESSRLQLA_					0	0	0			REV__ENSG00000117000|ENST00000372771|RLF	REV__ENSG00000117000|ENST00000372771|RLF	MULTI-MATCH	A375_MHC_IP_R2	2		2	452.248349	902.482145	-0.05054	-2.2857E-05	-1.0857	-0.00049102	-1.1363	-0.00051387	452.247668569656	94.231	1.3151	94.976	94.515	95.83	0.74474	0.099896	5.3904E-05	NaN	5.2307	39	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1810800	+		12867	17988	9302	9374							0.0270031037505305
ESSRSGHSF	9	Unmodified	_ESSRSGHSF_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MSMS	A375_MHC_IP_R1	1	497.1375427246094	2	497.222862	992.431172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.791	1	45.791	45.291	46.291	0								0	0	0	0.15486	1	16038	16038		11.64	0	1				12868	3741	9303	9375	12536	12536					-0.06534638669791093
ESSRTLKV	8	Unmodified	_ESSRTLKV_					0	0	0		ENST00000536984.6_2_18:63418077-63476947:+|nuORF	ENST00000536984.6_2_18:63418077-63476947:+|nuORF	ENST00000536984.6_2_18:63418077-63476947:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	460.6492614746094	2	460.263999	918.513445	-0.28176	-0.00012969	0.57588	0.00026506	0.29411	0.00013537	460.26418238534154	37.721	0.45963	37.721	37.556	38.016	0					12	8	2	0	0	0	0.86263	1	12706	12706		14.838	5.4551	1	1046400			12869	13245	9304	9376	12537	12537					0.05092883409156457
ESSSVLNTDPD	11	Unmodified	_ESSSVLNTDPD_					0	0	0		ENSG00000164588|ENST00000303230|HCN1	ENSG00000164588|ENST00000303230|HCN1	ENSG00000164588|ENST00000303230|HCN1	MSMS	A375_MHC_IP_R1	1	582.1680297851562	2	582.256765	1162.49898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.499	1	50.499	49.999	50.999	0								0	0	0	0.15183	1	17892	17892		19.362	0.10495	1				12870	6851	9305	9377	12538	12538					-0.0757727832033197
ESSVILLTLA	10	Unmodified	_ESSVILLTLA_					0	0	0		LGR5|p.F653I|1|0.77|ENSG00000139292|chr12:71583967-71583967|T/A|missense_variant	LGR5|p.F653I|1|0.77|ENSG00000139292|chr12:71583967-71583967|T/A|missense_variant	LGR5|p.F653I|1|0.77|ENSG00000139292|chr12:71583967-71583967|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	523.7099609375	2	523.310615	1044.60668	-0.57033	-0.00029846	-0.73327	-0.00038373	-1.3036	-0.00068219	523.3105385416596	83.727	1.3676	83.727	82.924	84.292	0					60	26	4	0	0	0	0.78945	1	30581	30581		19.257	3.4098	1	15248000			12871	14294	9306	9378	12539	12539					0.08615763071725269
ESSVWTSHR	9	Unmodified	_ESSVWTSHR_					0	0	0		ENSG00000166450|ENST00000389286|PRTG	ENSG00000166450|ENST00000389286|PRTG	ENSG00000166450|ENST00000389286|PRTG	MULTI-SECPEP	A375_MHC_IP_R1	1	545.122314453125	2	544.759612	1087.50467	-0.53271	-0.0002902	1.3172	0.00071755	0.78448	0.00042736	545.2639055265696	59.616	1.475	59.616	59.295	60.77	0					40	28	3	0	0	0	0.60917	1	21424	21424		13.906	3.8321	1	3392100			12872	7073	9307	9379	12540	12540					-0.03558090227329558
ESSWPYKEY	9	Unmodified	_ESSWPYKEY_					0	0	0		ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	MULTI-SECPEP	A375_MHC_IP_R2	2	396.61529541015625	3	396.845111	1187.5135	-0.36158	-0.00014349	-1.4935	-0.00059269	-1.8551	-0.00073618	396.8446417160437	23.966	0.6109	24.596	24.283	24.893	0.63014					20	11	3	0	0	0	0.67483	1	7819	7819		14.405	4.8614	1	2602400			12873	9657	9308	9380	12541	12541					-0.072751613814944
ESSYFDSF	8	Unmodified	_ESSYFDSF_					0	0	0		nc|ENSG00000205111|Q5MAI5|CDKL4;nc|ENSG00000205111|Q5MAI5-2|CDKL4;ENSG00000205111|ENST00000699627|CDKL4	nc|ENSG00000205111|Q5MAI5|CDKL4	nc|ENSG00000205111|Q5MAI5|CDKL4	MSMS	A375_MHC_IP_R1	1	491.1268005371094	2	491.195448	980.376342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.925	1	61.925	61.425	62.425	0								0	0	0	0.16876	1	22346	22346		14.582	5.2343	1				12874	14865	9309	9381	12542	12542					-0.11463070261083885
ESTCIWCLKL	10	Unmodified	_ESTCIWCLKL_					0	0	0			REV__ENST00000376723.7_1_2:128947470-128947854:+|nuORF	REV__ENST00000376723.7_1_2:128947470-128947854:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	398.6196594238281	3	399.199844	1194.5777	-0.40201	-0.00016048	1.4262	0.00056933	1.0242	0.00040884	399.5349360844912	32.4	0.30288	32.4	32.282	32.585	0					7	5	2	0	0	0	0.9269	1	10465	10465		0.62683	0	1	936170	+		12875	24149	9310	9382	12543	12543					-0.011804208205830946
ESTEEPQARF	10	Unmodified	_ESTEEPQARF_					0	0	0			REV__ENST00000285093.14_1_18:47310053-47310263:-|nuORF	REV__ENST00000285093.14_1_18:47310053-47310263:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	597.6748657226562	2	597.275292	1192.53603	-0.18316	-0.0001094	0.18026	0.00010767	-0.0028974	-1.7306E-06	597.2753768406202	47.96	0.55618	47.96	47.718	48.274	0					15	10	2	0	0	0	0.21466	1	16899	16899		47.749	13.347	1	3555300	+		12876	23335	9311	9383	12544	12544					-0.05253561983909094
ESTEEPQARF	10	Unmodified	_ESTEEPQARF_					0	0	0			REV__ENST00000285093.14_1_18:47310053-47310263:-|nuORF	REV__ENST00000285093.14_1_18:47310053-47310263:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	597.1961669921875	2	597.275292	1192.53603	-0.18316	-0.0001094	0.18026	0.00010767	-0.0028974	-1.7306E-06	597.2753768406202	47.96	0.55618	47.96	47.718	48.274	0					15	10	2	0	0	0	0.77204	1	16826	16826		27.629	2.6378	1	3555300	+		12877	23335	9311	9383	12545	12545					-0.05253561983909094
ESTKEGTTEY	10	Unmodified	_ESTKEGTTEY_					0	0	0		GPR107|p.E391K|1|0.38|ENSG00000148358|chr9:130104459-130104459|G/A|missense_variant	GPR107|p.E391K|1|0.38|ENSG00000148358|chr9:130104459-130104459|G/A|missense_variant	GPR107|p.E391K|1|0.38|ENSG00000148358|chr9:130104459-130104459|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	573.189453125	2	572.753858	1143.49316	-0.15815	-9.058E-05	0.44997	0.00025772	0.29182	0.00016714	572.754154167568	56.022	0.55676	56.022	55.738	56.295	0					26	10	3	0	0	0	0.17669	2	19995	19995;19999		51.63	15.503	1	11437000			12878	14062	9312	9384	12546;12547	12546					-0.07284376831989903
ESTKEGTTEY	10	Unmodified	_ESTKEGTTEY_					0	0	0		GPR107|p.E391K|1|0.38|ENSG00000148358|chr9:130104459-130104459|G/A|missense_variant	GPR107|p.E391K|1|0.38|ENSG00000148358|chr9:130104459-130104459|G/A|missense_variant	GPR107|p.E391K|1|0.38|ENSG00000148358|chr9:130104459-130104459|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	573.1544189453125	2	572.753858	1143.49316	-0.36749	-0.00021048	0.028846	1.6522E-05	-0.33864	-0.00019396	572.7540732085147	55.207	0.55964	55.958	55.678	56.237	0.75075					33	10	5	0	0	0	0.37864	1	20816	20816		53.833	9.9745	1	11982000			12879	14062	9312	9384	12548	12548					-0.07284376831989903
ESTRHLLPLQ	10	Unmodified	_ESTRHLLPLQ_					0	0	0			REV__ENST00000515982.1_2:234197345-234197513:+|nuORF	REV__ENST00000515982.1_2:234197345-234197513:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	398.9593200683594	3	398.559417	1192.65642	-0.099876	-3.9806E-05	0.19342	7.7088E-05	0.093541	3.7282E-05	398.559392892772	30.737	0.25079	31.455	31.317	31.567	0.71857					7	4	2	0	0	0	0.92514	1	10855	10855		2.6312	0	1	2299700	+		12880	25666	9313	9385	12549	12549					0.06779890800362409
ESTRRLHDE	9	Unmodified	_ESTRRLHDE_					0	0	0		nc|ENSG00000126970|Q9NQZ6-2|ZC4H2;ENST00000488608.5_1_X:64139959-64196305:-|nuORF;ENST00000492653.5_1_X:64139109-64196305:-|nuORF;nc|ENSG00000126970|Q9NQZ6-4|ZC4H2;nc|ENSG00000126970|Q9NQZ6-3|ZC4H2;nc|ENSG00000126970|Q9NQZ6-5|ZC4H2;ENSG00000126970|ENST00000374839|ZC4H2	nc|ENSG00000126970|Q9NQZ6-2|ZC4H2	nc|ENSG00000126970|Q9NQZ6-2|ZC4H2	MULTI-MSMS	A375_MHC_IP_R1	1	572.1962280273438	2	571.781076	1141.5476	-0.082696	-4.7284E-05	1.4962	0.0008555	1.4135	0.00080822	571.7817516683223	37.376	0.45993	37.376	37.198	37.658	0					10	8	2	0	0	0	0.57432	1	12614	12614		16.942	6.1184	1	902300			12881	4072	9314	9386	12550	12550					-0.017513201699102865
ESVAFSGWF	9	Unmodified	_ESVAFSGWF_					0	0	0		IL36A|p.P124S|1|0.34|ENSG00000136694|chr2:113007937-113007937|C/T|missense_variant	IL36A|p.P124S|1|0.34|ENSG00000136694|chr2:113007937-113007937|C/T|missense_variant	IL36A|p.P124S|1|0.34|ENSG00000136694|chr2:113007937-113007937|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	514.9547119140625	2	515.23745	1028.46035	-0.69346	-0.00035729	-3.1306	-0.001613	-3.824	-0.0019703	515.2352634574057	63.933	0.30349	64.674	64.446	64.749	0.74022					7	5	2	0	0	0	0.67483	1	24175	24175		10.074	0	1	1005900			12882	14158	9315	9387	12551	12551					-0.05274494373520611
ESVDIRQIY	9	Unmodified	_ESVDIRQIY_					0	0	0		ENSG00000187079|ENST00000527636|TEAD1	ENSG00000187079|ENST00000527636|TEAD1	ENSG00000187079|ENST00000527636|TEAD1	MULTI-MSMS	A375_MHC_IP_R2	2	562.2056884765625	2	561.793121	1121.57169	-0.68742	-0.00038619	0.083224	4.6754E-05	-0.6042	-0.00033944	561.7931173344163	55.258	0.96514	56.009	55.729	56.694	0.75075					54	18	4	0	0	0	0.23226	1	20781	20781		31.268	0	1	34483000			12883	8804	9316	9388	12552	12552					0.0157652026375672
ESVEVFDEDD	10	Unmodified	_ESVEVFDEDD_					0	0	0			REV__UVSSA|p.P412S|1|0.34|ENSG00000163945|chr4:1366377-1366377|C/T|missense_variant	REV__UVSSA|p.P412S|1|0.34|ENSG00000163945|chr4:1366377-1366377|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	593.698486328125	2	592.235498	1182.45644	-0.55891	-0.00033101	0.73898	0.00043765	0.18007	0.00010664	592.2359179740894	76.451	0.81219	77.191	76.843	77.655	0.74052					47	15	4	0	0	0	0.70651	1	29052	29052		9.3831	3.1773	1	12513000	+		12884	28975	9317	9389	12553	12553					-0.12748673448550107
ESVFLMWLL	9	Unmodified	_ESVFLMWLL_					0	0	0			REV__ENST00000586287.1_1_6:41250094-41254393:-|nuORF	REV__ENST00000586287.1_1_6:41250094-41254393:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	569.7055053710938	2	569.304278	1136.594	-0.34007	-0.0001936	1.2807	0.00072912	0.94065	0.00053552	569.3055519094817	77.446	0.56007	78.189	77.908	78.468	0.74293					20	10	3	0	0	0	0.62767	1	29425	29425		16.942	6.1184	1	1781500	+		12885	18321	9318	9390	12554	12554					0.03117028407837097
ESVGHGYRRYW	11	Unmodified	_ESVGHGYRRYW_					0	0	0			REV__nc|ENSG00000018236|Q12860-3|CNTN1	REV__nc|ENSG00000018236|Q12860-3|CNTN1	MULTI-SECPEP	A375_MHC_IP_R2	2	705.7918701171875	2	705.339092	1408.66363	-0.70285	-0.00049575	-0.72015	-0.00050795	-1.423	-0.0010037	705.8400640631487	70.534	0.25307	71.268	71.149	71.402	0.73421					6	4	2	0	0	0	0.98748	1	26738	26738		8.7454	3.0136	1	1496800	+		12886	16254	9319	9391	12555	12555					-0.024353765991918408
ESVISLAKHR	10	Unmodified	_ESVISLAKHR_					0	0	0		tr|U7T2H3|U7T2H3_FUSNUMagnesiumtransporterMgtEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00566PE=3SV=1	tr|U7T2H3|U7T2H3_FUSNUMagnesiumtransporterMgtEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00566PE=3SV=1	tr|U7T2H3|U7T2H3_FUSNUMagnesiumtransporterMgtEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00566PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	569.70166015625	2	570.330205	1138.64586	-0.62091	-0.00035412	-0.048513	-2.7669E-05	-0.66942	-0.00038179	570.3301002519877	61.099	0.5033	61.844	61.618	62.121	0.74503					15	9	2	0	0	0	0.85226	1	23070	23070		6.2058	0	1	2163600			12887	29932	9320	9392	12556	12556					0.08207908145936926
ESVIVLVAHPF	11	Unmodified	_ESVIVLVAHPF_					0	0	0			REV__chr17:43941654-43944913|123|17.49|0.03|9.19|-|1|TE_info:THE1D,THE1D_dup11417,ERVL-MaLR,LTR,donor,-,43944913,43945207|PPY,None|2	REV__chr17:43941654-43944913|123|17.49|0.03|9.19|-|1|TE_info:THE1D,THE1D_dup11417,ERVL-MaLR,LTR,donor,-,43944913,43945207|PPY,None|2	MULTI-MSMS	A375_MHC_IP_R1	1	606.1723022460938	2	605.845156	1209.67576	-0.24048	-0.0001457	-0.26517	-0.00016065	-0.50565	-0.00030635	605.8449627658229	78.093	0.71155	78.093	77.793	78.505	0					21	13	2	0	0	0	0.73658	1	28393	28393		5.7319	3.8876	1	7154600	+		12888	15723	9321	9393	12557	12557					0.0793084709125651
ESVKATEQL	9	Unmodified	_ESVKATEQL_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000016046	REV__CON__ENSEMBL:ENSBTAP00000016046	MULTI-SECPEP	A375_MHC_IP_R2	2	502.1822204589844	2	502.766571	1003.51859	-0.77303	-0.00038865	-0.19225	-9.6657E-05	-0.96528	-0.00048531	502.7661459062169	36.229	0.40791	37	36.85	37.258	0.7709					11	7	2	0	0	0	0.69507	1	13188	13188		19.257	1.1106	1	1091700	+	+	12889	15841	9322	9394	12558	12558					0.016971424811004
ESVKPIDTF	9	Unmodified	_ESVKPIDTF_					0	0	0			REV__PARP4|p.P1189T|1|0.25|ENSG00000102699|chr13:24441947-24441947|G/T|missense_variant	REV__PARP4|p.P1189T|1|0.25|ENSG00000102699|chr13:24441947-24441947|G/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	518.9713134765625	2	518.27149	1034.52843	-0.76688	-0.00039745	-3.4994	-0.0018136	-4.2663	-0.0022111	518.7697140423998	45.34	0.25415	46.105	45.947	46.201	0.76519					6	4	2	0	0	0	0.75466	1	16897	16897		1.8442	0	1	362120	+		12890	27717	9323	9395	12559	12559					0.012543304864720994
ESVLLDFL	8	Unmodified	_ESVLLDFL_					0	0	0			REV__ENST00000486796.1_1_3:33686156-33700574:-|nuORF	REV__ENST00000486796.1_1_3:33686156-33700574:-|nuORF	MSMS	A375_MHC_IP_R1	1	468.1712951660156	2	468.257851	934.501149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.949	1	76.949	76.449	77.449	0								0	0	0	0.16876	1	28058	28058		13.508	4.1604	1		+		12891	25325	9324	9396	12560	12560					0.031278469460858105
ESVLNVEY	8	Unmodified	_ESVLNVEY_					0	0	0			REV__nc|ENSG00000155093|Q92932-3|PTPRN2	REV__nc|ENSG00000155093|Q92932-3|PTPRN2	MULTI-MSMS	A375_MHC_IP_R2	2	477.39398193359375	2	476.73474	951.454927	-0.78096	-0.00037231	0.027068	1.2904E-05	-0.7539	-0.00035941	476.73463045523465	49.896	0.61069	50.651	50.344	50.955	0.75406					27	11	3	0	0	0	0.77624	1	18680	18680		8.5933	0	1	2591800	+		12892	27302	9325	9397	12561	12561					-0.022742179559941178
ESVNKYIF	8	Unmodified	_ESVNKYIF_					0	0	0			REV__ENSG00000087237|ENST00000200676|CETP	REV__ENSG00000087237|ENST00000200676|CETP	MULTI-SECPEP	A375_MHC_IP_R1	1	500.66009521484375	2	500.260925	998.507297	-0.23324	-0.00011668	-0.13892	-6.9494E-05	-0.37216	-0.00018618	500.2608459392583	54.406	0.45387	54.406	54.113	54.567	0					14	8	2	0	0	0	0.86263	1	19407	19407		20.454	1.1966	1	2470900	+		12893	16868	9326	9398	12562	12562					0.007983651776271472
ESVNLRIAA	9	Unmodified	_ESVNLRIAA_					0	0	0		ENST00000483071.1_1_3:50326655-50327355:-|nuORF;ENST00000464258.5_1_3:50325776-50327005:-|nuORF;ENSG00000214706|ENST00000417626|IFRD2	ENST00000483071.1_1_3:50326655-50327355:-|nuORF	ENST00000483071.1_1_3:50326655-50327355:-|nuORF	MSMS	A375_MHC_IP_R1	1	486.67401123046875	2	486.777274	971.539994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.43	1	116.43	115.93	116.93	0								0	0	0	0.13141	1	42707	42707		32.305	0	1				12894	9623	9327	9399	12563	12563					0.053085723004642205
ESVQLEKLSNY	11	Unmodified	_ESVQLEKLSNY_					0	0	0			REV__tr|U7SGJ5|U7SGJ5_FUSNUFilamentoushaemagglutininFhaB/tRNAnucleaseCdiA-likeTPSdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02209PE=4SV=1	REV__tr|U7SGJ5|U7SGJ5_FUSNUFilamentoushaemagglutininFhaB/tRNAnucleaseCdiA-likeTPSdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02209PE=4SV=1	MSMS	A375_MHC_IP_R2	2	655.2298583984375	2	655.33535	1308.65615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.95	1	26.61	26.11	27.11	0.65992								0	0	0	0.16203	1	8726	8726		8.1555	2.4237	1		+		12895	28185	9328	9400	12564	12564					0.014164262898930247
ESVRMFVGY	9	Unmodified	_ESVRMFVGY_					0	0	0			REV__ENSG00000185129|ENST00000331327|PURA	REV__ENSG00000185129|ENST00000331327|PURA	MULTI-SECPEP	A375_MHC_IP_R1	1	544.65087890625	2	544.265684	1086.51682	-0.52268	-0.00028448	-3.1313	-0.0017043	-3.654	-0.0019887	544.2637557400172	33.823	0.60794	33.823	33.342	33.95	0					15	11	2	0	0	0	0.39388	1	11059	11059		25.399	0	1	2033500	+		12896	21872	9329	9401	12565	12565					-0.02298189808470852
ESVTGHLLY	9	Unmodified	_ESVTGHLLY_					0	0	0			REV__nc|ENSG00000154719|Q9NYK5-2|MRPL39	REV__nc|ENSG00000154719|Q9NYK5-2|MRPL39	MULTI-MSMS	A375_MHC_IP_R1	1	509.67181396484375	2	509.763832	1017.51311	-0.42282	-0.00021554	-0.085103	-4.3382E-05	-0.50793	-0.00025892	509.7637531113464	50.718	1.7286	50.718	50.305	52.034	0					101	33	6	0	0	0	0.46038	1	18310	18310		21.747	0	1	147180000	+		12897	27300	9330	9402	12566	12566					0.005054636892964481
ESVVFFLFF	9	Unmodified	_ESVVFFLFF_					0	0	0			REV__ENSG00000197125|ENST00000642064|OR8B8	REV__ENSG00000197125|ENST00000642064|OR8B8	MULTI-SECPEP	A375_MHC_IP_R2	2	379.6241149902344	3	378.867188	1133.57973	0.17593	6.6655E-05	0.51025	0.00019332	0.68618	0.00025997	378.86736973805023	27.496	0.30552	28.174	27.945	28.251	0.67857					9	5	2	0	0	0	0.75466	1	9343	9343		12.241	7.7118	1	7153300	+		12898	22258	9331	9403	12567	12567					0.018286992512003053
ESVVQVSGTV	10	Unmodified	_ESVVQVSGTV_					0	0	0		ENSG00000117593|ENST00000649689|DARS2	ENSG00000117593|ENST00000649689|DARS2	ENSG00000117593|ENST00000649689|DARS2	MULTI-SECPEP	A375_MHC_IP_R1	1	503.1685485839844	2	502.766571	1003.51859	-0.65691	-0.00033027	3.9303	0.001976	3.2733	0.0016457	502.7688775714382	23.728	0.30475	23.728	23.584	23.889	0					11	5	3	0	0	0	0.91442	1	6608	6608		2.2828	0	1	3835400			12899	3496	9332	9404	12568	12568					0.016971424811117686
ESVWEELVDL	10	Unmodified	_ESVWEELVDL_					0	0	0		ENST00000547985.1_1_12:82752311-82780584:+|nuORF;ENST00000548569.5_1_12:82752311-82782582:+|nuORF;ENST00000547357.5_1_12:82752311-82853681:+|nuORF;ENSG00000127720|ENST00000248306|METTL25	ENST00000547985.1_1_12:82752311-82780584:+|nuORF	ENST00000547985.1_1_12:82752311-82780584:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	609.2274780273438	2	609.798069	1217.58158	-0.33258	-0.00020281	-1.1109	-0.00067744	-1.4435	-0.00088025	610.2986796851307	73.928	1.6738	73.928	73.386	75.06	0					45	32	2	0	0	0	0.9269	1	26879	26879		3.5965	0.31518	1	1114600			12900	4102	9333	9405	12569	12569					-0.018503365215110534
ESWATDRLY	9	Unmodified	_ESWATDRLY_					0	0	0		ENSG00000151806|ENST00000281543|GUF1	ENSG00000151806|ENST00000281543|GUF1	ENSG00000151806|ENST00000281543|GUF1	MULTI-MSMS	A375_MHC_IP_R2	2	571.704833984375	2	570.769645	1139.52474	-0.18731	-0.00010691	-0.93877	-0.00053582	-1.1261	-0.00064273	570.7690130746197	47.985	0.4536	48.746	48.429	48.883	0.76128					16	8	3	0	0	0	0.68216	1	18024	18024		8.5933	1.8701	1	1528800			12901	5929	9334	9406	12570	12570					-0.03944339287386356
ESWDRNNPL	9	Unmodified	_ESWDRNNPL_					0	0	0		LILRA6|p.P68S|1|0.49|ENSG00000244482|chr19:54242179-54242179|G/A|missense_variant	LILRA6|p.P68S|1|0.49|ENSG00000244482|chr19:54242179-54242179|G/A|missense_variant	LILRA6|p.P68S|1|0.49|ENSG00000244482|chr19:54242179-54242179|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	376.9679870605469	3	377.512355	1129.51524	0.15996	6.0388E-05	-0.64547	-0.00024367	-0.48551	-0.00018328	377.5120852919266	30.445	0.45468	31.164	30.962	31.417	0.71857					12	8	2	0	0	0	0.78798	1	10669	10669		0.86438	0	1	1250800			12902	14299	9335	9407	12571	12571					-0.044341075729107615
ESWGQDGIW	9	Unmodified	_ESWGQDGIW_					0	0	0		ENST00000550051.5_1_12:112563419-112579054:+|nuORF;ENSG00000135148|ENST00000412615|TRAFD1	ENST00000550051.5_1_12:112563419-112579054:+|nuORF	ENST00000550051.5_1_12:112563419-112579054:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	539.3818969726562	2	539.235439	1076.45632	-0.7236	-0.00039019	0.68401	0.00036884	-0.03959	-2.1349E-05	539.2356846240447	58.486	0.86422	58.486	58.177	59.041	0					34	16	3	0	0	0	0.76187	1	20905	20905		3.9444	0	1	2312700			12903	4653	9336	9408	12572	12572					-0.07884583867257788
ESWKHVRDFKW	11	Unmodified	_ESWKHVRDFKW_					0	0	0			REV__ENSG00000153574|ENST00000283646|RPIA	REV__ENSG00000153574|ENST00000283646|RPIA	MSMS	A375_MHC_IP_R1	1	506.6591796875	3	506.59312	1516.75753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.489	1	38.489	37.989	38.989	0								0	0	0	0.16313	1	13062	13062		2.4348	0.35082	1		+		12904	19844	9337	9409	12573	12573					0.019823425030836006
ESWKHVRDFKW	11	Unmodified	_ESWKHVRDFKW_					0	0	0			REV__ENSG00000153574|ENST00000283646|RPIA	REV__ENSG00000153574|ENST00000283646|RPIA	MSMS	A375_MHC_IP_R2	2	506.63470458984375	3	506.59312	1516.75753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.807	1	38.582	38.082	39.082	0.77451								0	0	0	0.16313	1	13861	13861		2.4348	0.35082	1		+		12905	19844	9337	9409	12574	12574					0.019823425030836006
ESWLQMMDP	9	Unmodified	_ESWLQMMDP_					0	0	0			REV__ENSG00000107959|ENST00000224949|PITRM1	REV__ENSG00000107959|ENST00000224949|PITRM1	MULTI-MSMS	A375_MHC_IP_R2	2	569.1415405273438	2	568.741185	1135.46782	-0.50229	-0.00028567	0.65665	0.00037346	0.15436	8.7789E-05	568.7416178146293	35.921	0.61082	36.685	36.283	36.894	0.76338					12	8	2	0	0	0	0.58047	1	13083	13083		15.847	1.9411	1	2290700	+		12906	17509	9338	9410	12575	12575					-0.09449846159759545
ESWLQMMDP	9	Unmodified	_ESWLQMMDP_					0	0	0			REV__ENSG00000107959|ENST00000224949|PITRM1	REV__ENSG00000107959|ENST00000224949|PITRM1	MULTI-MATCH	A375_MHC_IP_R1	1		2	568.741185	1135.46782	-0.61017	-0.00034703	0.66448	0.00037792	0.054303	3.0884E-05	568.7415625366824	36.57	0.45747	36.57	36.287	36.745	0	-0.057495	4.3937E-06	NaN	15.847	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1887700	+		12907	17509	9338	9410							-0.09449846159759545
ESWLQMMDP	9	Unmodified	_ESWLQMMDP_					0	0	0			REV__ENSG00000107959|ENST00000224949|PITRM1	REV__ENSG00000107959|ENST00000224949|PITRM1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	568.741185	1135.46782	-0.50229	-0.00028567	0.65665	0.00037346	0.15436	8.7789E-05	568.7416178146293	35.921	0.61082	36.685	36.283	36.894	0.76338	0.057495	-4.5113E-06	NaN	15.847	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2290700	+		12908	17509	9338	9410							-0.09449846159759545
ESWQCHMLA	9	Unmodified	_ESWQCHMLA_					0	0	0		ENST00000344651.4_1_12:121159274-121159475:+|nuORF	ENST00000344651.4_1_12:121159274-121159475:+|nuORF	ENST00000344651.4_1_12:121159274-121159475:+|nuORF	MSMS	A375_MHC_IP_R1	1	552.695068359375	2	552.733694	1103.45284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.004	1	95.004	94.504	95.504	0								0	0	0	0.15486	1	34919	34919		8.5933	2.3875	1				12909	10896	9339	9411	12576	12576					-0.09475293237096594
ESWRRWRRAEV	11	Unmodified	_ESWRRWRRAEV_					0	0	0		ENST00000377604.7_1_X:47004707-47006821:+|nuORF	ENST00000377604.7_1_X:47004707-47006821:+|nuORF	ENST00000377604.7_1_X:47004707-47006821:+|nuORF	MSMS	A375_MHC_IP_R1	1	510.9736022949219	3	510.939402	1529.79638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.032	1	30.032	29.532	30.532	0								0	0	0	0.16302	1	9488	9488		1.2148	0.76031	1				12910	11298	9340	9412	12577	12577					0.052670678574486374
ESYDKYEFY	9	Unmodified	_ESYDKYEFY_					0	0	0		tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1	tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1	tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1	MSMS	A375_MHC_IP_R1	1	622.2098999023438	2	622.261319	1242.50808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.339	1	82.339	81.839	82.839	0								0	0	0	0.15486	1	30110	30110		7.9102	0.62092	1				12911	29868	9341	9413	12578	12578					-0.10346884963996672
ESYDQVRPA	9	Unmodified	_ESYDQVRPA_					0	0	0		ENST00000453514.5_1_5:78908331-78908559:+|nuORF;ENST00000423041.6_1_5:78908331-78908849:+|nuORF	ENST00000453514.5_1_5:78908331-78908559:+|nuORF	ENST00000453514.5_1_5:78908331-78908559:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	533.2319946289062	2	532.753995	1063.49344	-0.82972	-0.00044204	0.19442	0.00010358	-0.6353	-0.00033846	532.7540709191773	36.081	0.30714	36.848	36.745	37.052	0.76742					10	5	2	0	0	0	0.69674	1	13089	13089		7.2892	1.0834	1	2450500			12912	11755	9342	9414	12579	12579					-0.03576912321477721
ESYEETTV	8	Unmodified	_ESYEETTV_					0	0	0		ENST00000413069.5_1_2:70312962-70313612:-|nuORF	ENST00000413069.5_1_2:70312962-70313612:-|nuORF	ENST00000413069.5_1_2:70312962-70313612:-|nuORF	MSMS	A375_MHC_IP_R1	1	479.1977844238281	2	479.206012	956.397472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.469	1	34.469	33.969	34.969	0								0	0	0	0.16876	1	11365	11365		14.582	0	1				12913	11652	9343	9415	12580	12580					-0.08247104952226891
ESYELHYDR	9	Unmodified	_ESYELHYDR_					0	0	0			REV__nc|ENSG00000006715|P49754-2|VPS41	REV__nc|ENSG00000006715|P49754-2|VPS41	MULTI-SECPEP	A375_MHC_IP_R1	1	605.752685546875	2	606.27001	1210.52547	-0.50529	-0.00030634	0.28017	0.00016986	-0.22513	-0.00013649	606.2700059903468	66.145	1.3741	66.145	65.717	67.091	0					57	26	4	0	0	0	0.79191	1	24170	24170		3.5965	3.5965	1	17377000	+		12914	16142	9344	9416	12581	12581					-0.07137544638339932
ESYFFKMSKYA	11	Unmodified	_ESYFFKMSKYA_					0	0	0		tr|U7SPA0|U7SPA0_FUSNUMethionine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=metGPE=3SV=1	tr|U7SPA0|U7SPA0_FUSNUMethionine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=metGPE=3SV=1	tr|U7SPA0|U7SPA0_FUSNUMethionine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=metGPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	467.62200927734375	3	467.556684	1399.64822	-0.79041	-0.00036956	-0.48177	-0.00022525	-1.2722	-0.00059481	467.8904033347068	65.561	0.45625	66.299	66.069	66.526	0.73811					11	8	2	0	0	0	0.73354	1	24888	24888		5.5233	0.80737	1	1426200			12915	29575	9345	9417	12582	12582					-0.035614242312703936
ESYHYSRY	8	Unmodified	_ESYHYSRY_					0	0	0			REV__ENSG00000126010|ENST00000380289|GRPR	REV__ENSG00000126010|ENST00000380289|GRPR	MSMS	A375_MHC_IP_R1	1	552.6777954101562	2	552.740888	1103.46722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.695	1	69.695	69.195	70.195	0								0	0	0	0.16876	1	25296	25296		5.7604	0	1		+		12916	18377	9346	9418	12583	12583					-0.08037181492954915
ESYKFKFQ	8	Unmodified	_ESYKFKFQ_					0	0	0		nc|ENSG00000164627|Q6ZMV9-3|KIF6;ENSG00000164627|ENST00000287152|KIF6	nc|ENSG00000164627|Q6ZMV9-3|KIF6	nc|ENSG00000164627|Q6ZMV9-3|KIF6	MULTI-MSMS	A375_MHC_IP_R2	2	539.2024536132812	2	538.7742	1075.53385	-1.0552	-0.0005685	-0.76571	-0.00041254	-1.8209	-0.00098104	538.7736973805647	66.085	0.96814	66.824	66.222	67.191	0.73811					32	18	2	0	0	0	0.74945	1	24891	24891		20.454	3.3407	1	6368300			12917	6857	9347	9419	12584	12584					-0.0008994593106308457
ESYKRNDPIVR	11	Unmodified	_ESYKRNDPIVR_					0	0	0			REV__PCDHB11|p.P192S|1|0.19|ENSG00000197479|chr5:141200348-141200348|C/T|missense_variant	REV__PCDHB11|p.P192S|1|0.19|ENSG00000197479|chr5:141200348-141200348|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	459.98046875	3	459.58088	1375.72081	-0.21932	-0.00010079	-0.33799	-0.00015534	-0.55731	-0.00025613	459.5806760150097	25.229	0.5601	25.229	25.053	25.613	0					25	10	3	0	0	0	0.7353	1	7335	7335		3.8459	3.8459	1	17070000	+		12918	27732	9348	9420	12585	12585					0.04798045886491309
ESYKRNDPIVR	11	Unmodified	_ESYKRNDPIVR_					0	0	0			REV__PCDHB11|p.P192S|1|0.19|ENSG00000197479|chr5:141200348-141200348|C/T|missense_variant	REV__PCDHB11|p.P192S|1|0.19|ENSG00000197479|chr5:141200348-141200348|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	460.3148498535156	3	459.58088	1375.72081	-0.76031	-0.00034942	-0.14316	-6.5793E-05	-0.90347	-0.00041522	459.58084839891393	24.618	0.60873	25.261	25.11	25.719	0.64368					24	11	3	0	0	0	0.73715	1	8126	8126		2.084	0.62885	1	10841000	+		12919	27732	9348	9420	12586	12586					0.04798045886491309
ESYNAYPL	8	Unmodified	_ESYNAYPL_					0	0	0		nc|ENSG00000116698|Q92540-4|SMG7;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;ENSG00000116698|ENST00000688051|SMG7	nc|ENSG00000116698|Q92540-4|SMG7	nc|ENSG00000116698|Q92540-4|SMG7	MULTI-SECPEP	A375_MHC_IP_R1	1	479.1224670410156	2	478.721633	955.428712	-0.41935	-0.00020075	1.1369	0.00054428	0.71759	0.00034353	478.72243505116	73.129	0.4557	73.129	72.83	73.285	0					13	8	2	0	0	0	0.96296	1	26640	26640		5.7604	5.7604	1	1379800			12920	14558	9349	9421	12587	12587					-0.050784871274800025
ESYNAYPL	8	Unmodified	_ESYNAYPL_					0	0	0		nc|ENSG00000116698|Q92540-4|SMG7;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;ENSG00000116698|ENST00000688051|SMG7	nc|ENSG00000116698|Q92540-4|SMG7	nc|ENSG00000116698|Q92540-4|SMG7	MULTI-MATCH	A375_MHC_IP_R2	2		2	478.721633	955.428712	-0.7327	-0.00035076	1.9363	0.00092693	1.2036	0.00057617	478.7227085158251	72.331	0.45555	73.067	72.771	73.226	0.7354	-0.030992	0.00029911	NaN	5.7604	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	893910			12921	14558	9349	9421							-0.050784871274800025
ESYNQIWY	8	Unmodified	_ESYNQIWY_					0	0	0			REV__ENSG00000100985|ENST00000372330|MMP9	REV__ENSG00000100985|ENST00000372330|MMP9	MULTI-MSMS	A375_MHC_IP_R2	2	552.1456298828125	2	551.745639	1101.47673	-0.79419	-0.00043819	0.68424	0.00037753	-0.10995	-6.0667E-05	551.7460571495142	67.363	1.1696	68.099	67.342	68.511	0.73631					36	22	2	0	0	0	0.77702	1	25484	25484		5.7604	5.7604	1	2181200	+		12922	17134	9350	9422	12588	12588					-0.06995413207414458
ESYTQSFQ	8	Unmodified	_ESYTQSFQ_					0	0	0		ENSG00000155252|ENST00000370631|PI4K2A	ENSG00000155252|ENST00000370631|PI4K2A	ENSG00000155252|ENST00000370631|PI4K2A	MULTI-SECPEP	A375_MHC_IP_R1	1	495.4583435058594	2	495.214172	988.413791	-0.44413	-0.00021994	0.82536	0.00040873	0.38123	0.00018879	495.2143096208553	77.08	0.76419	77.08	76.572	77.336	0					21	14	2	0	0	0	0.95423	1	28121	28121		18.135	1.1927	1	1109500			12923	6133	9351	9423	12589	12589					-0.08087978995467893
ESYVENMSY	9	Unmodified	_ESYVENMSY_					0	0	0			REV__tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	REV__tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	561.6661376953125	2	561.226422	1120.43829	-0.52869	-0.00029671	0.17061	9.575E-05	-0.35808	-0.00020096	561.72747099254	69.78	0.35767	70.514	70.233	70.591	0.73421					8	6	2	0	0	0	0.43185	1	26410	26410		23.148	10.617	1	1219900	+		12924	28608	9352	9424	12590	12590					-0.11711086904256263
ESYVENMSY	9	Unmodified	_ESYVENMSY_					0	0	0			REV__tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	REV__tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	561.226422	1120.43829	-0.32333	-0.00018146	-2.8462	-0.0015974	-3.1696	-0.0017788	561.7256054882716	70.398	0.46059	70.398	70.085	70.545	0	-0.057975	-0.0014404	NaN	23.148	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	951700	+		12925	28608	9352	9424							-0.11711086904256263
ESYVENMSY	9	Unmodified	_ESYVENMSY_					0	0	0			REV__tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	REV__tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	561.226422	1120.43829	-0.52869	-0.00029671	0.17061	9.575E-05	-0.35808	-0.00020096	561.72747099254	69.78	0.35767	70.514	70.233	70.591	0.73421	0.057975	0.0019458	NaN	23.148	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1219900	+		12926	28608	9352	9424							-0.11711086904256263
ETAAPPDLPL	10	Unmodified	_ETAAPPDLPL_					0	0	0			REV__ENST00000473758.5_1_14:23537713-23537824:-|nuORF	REV__ENST00000473758.5_1_14:23537713-23537824:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	512.6715087890625	2	512.27149	1022.52843	-0.27313	-0.00013992	0.31879	0.00016331	0.045656	2.3388E-05	512.271423455458	54.021	0.65713	54.021	53.707	54.364	0					27	12	3	0	0	0	0.48072	1	19266	19266		37.974	0	1	2862700	+		12927	25154	9353	9425	12591	12591					0.01806330486465413
ETAASLLQAGY	11	Unmodified	_ETAASLLQAGY_					0	0	0		ENSG00000180210|ENST00000311907|F2	ENSG00000180210|ENST00000311907|F2	ENSG00000180210|ENST00000311907|F2	MULTI-SECPEP	A375_MHC_IP_R1	1	562.685302734375	2	562.285128	1122.5557	-0.1584	-8.9063E-05	0.3045	0.00017122	0.14611	8.2153E-05	562.2851101735006	49.666	0.66257	49.666	49.336	49.998	0					26	12	3	0	0	0	0.1003	1	17542	17542		62.573	0	1	8596400			12928	8282	9354	9426	12592	12592					-0.0006718597312556085
ETAEMPGFYK	10	Unmodified	_ETAEMPGFYK_					0	0	0		tr|U7SUU5|U7SUU5_FUSNUPhosphoribosylformylglycinamidinecyclo-ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purMPE=3SV=1	tr|U7SUU5|U7SUU5_FUSNUPhosphoribosylformylglycinamidinecyclo-ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purMPE=3SV=1	tr|U7SUU5|U7SUU5_FUSNUPhosphoribosylformylglycinamidinecyclo-ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purMPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	391.9335632324219	3	391.514597	1171.52196	-0.065893	-2.5798E-05	1.7644	0.00069078	1.6985	0.00066498	391.51537915282313	28.92	0.20215	28.92	28.845	29.047	0					6	3	2	0	0	0	0.92957	1	8998	8998		3.3196	2.2482	1	1099800			12929	29777	9355	9427	12593	12593					-0.056939307365382774
ETAERITLT	9	Unmodified	_ETAERITLT_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-6|OBSCN	REV__nc|ENSG00000154358|Q5VST9-6|OBSCN	MULTI-SECPEP	A375_MHC_IP_R1	1	517.2059936523438	2	517.279846	1032.54514	-0.67623	-0.0003498	1.7615	0.00091118	1.0853	0.00056138	517.2801005896507	27.747	0.65577	27.747	27.331	27.987	0					29	12	3	0	0	0	0.60917	1	8395	8395		9.3831	0	1	5446600	+		12930	27298	9356	9428	12594	12594					0.030168313724288964
ETAERITLT	9	Unmodified	_ETAERITLT_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-6|OBSCN	REV__nc|ENSG00000154358|Q5VST9-6|OBSCN	MULTI-SECPEP	A375_MHC_IP_R2	2	517.205322265625	2	517.279846	1032.54514	-0.8785	-0.00045443	1.8701	0.00096739	0.99165	0.00051296	517.2801273276099	27.004	0.51287	27.67	27.37	27.883	0.66652					23	9	3	0	0	0	0.53748	1	9143	9143		5.2969	1.7004	1	4159800	+		12931	27298	9356	9428	12595	12595					0.030168313724288964
ETAHNENKFY	10	Unmodified	_ETAHNENKFY_					0	0	0		nc|ENSG00000153064|Q8NDB2-4|BANK1;nc|ENSG00000153064|Q8NDB2-3|BANK1;nc|ENSG00000153064|Q8NDB2-2|BANK1;ENSG00000153064|ENST00000322953|BANK1	nc|ENSG00000153064|Q8NDB2-4|BANK1	nc|ENSG00000153064|Q8NDB2-4|BANK1	MULTI-SECPEP	A375_MHC_IP_R1	1	418.9662170410156	3	418.191282	1251.55202	0.11355	4.7487E-05	0.065926	2.757E-05	0.17948	7.5056E-05	418.1912565335002	34.373	0.35322	34.373	34.154	34.507	0					9	6	2	0	0	0	0.94587	1	11380	11380		0.69767	0	1	946910			12932	6002	9357	9429	12596	12596					-0.0636985574699338
ETAIHSLIET	10	Unmodified	_ETAIHSLIET_					0	0	0		ENSG00000075539|ENST00000358350|FRYL;nc|ENSG00000075539|O94915-2|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	A375_MHC_IP_R2	2	557.2265014648438	2	557.292953	1112.57135	-0.76112	-0.00042417	-0.021275	-1.1856E-05	-0.78239	-0.00043602	557.292834425248	76.754	0.40431	77.494	77.301	77.705	0.74052					10	7	2	0	0	0	0.72086	1	29089	29089		30.637	15.798	1	1173000			12933	1612	9358	9430	12597	12597					0.019571005439274813
ETALFIGQ	8	Unmodified	_ETALFIGQ_					0	0	0			REV__tr|U7SSP6|U7SSP6_FUSNUProlineiminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01336PE=3SV=1	REV__tr|U7SSP6|U7SSP6_FUSNUProlineiminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01336PE=3SV=1	MSMS	A375_MHC_IP_R1	1	439.7732238769531	2	439.734543	877.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.874	1	21.874	21.374	22.374	0								0	0	0	0.16876	1	5809	5809		5.2307	0	1		+		12934	28439	9359	9431	12598	12598					0.010904071148161165
ETALIQHQVDE	11	Unmodified	_ETALIQHQVDE_					0	0	0			REV__nc|ENSG00000072571|O75330-4|HMMR	REV__nc|ENSG00000072571|O75330-4|HMMR	MULTI-SECPEP	A375_MHC_IP_R2	2	427.64794921875	3	428.213975	1281.62009	-0.2053	-8.7914E-05	-0.89645	-0.00038387	-1.1018	-0.00047179	428.21355131667195	32.095	0.30399	32.832	32.605	32.909	0.73692					8	5	2	0	0	0	0.99252	1	11321	11321		11.631	5.7632	1	891030	+		12935	16605	9360	9432	12599	12599					-0.009450308870100343
ETAMCQQKEL	10	Unmodified	_ETAMCQQKEL_					0	0	0			REV__nc|ENSG00000118557|Q8TBY8-3|PMFBP1	REV__nc|ENSG00000118557|Q8TBY8-3|PMFBP1	MSMS	A375_MHC_IP_R2	2	590.6920776367188	2	590.770474	1179.52639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.839	1	85.575	85.075	86.075	0.73601								0	0	0	0.1524	1	32253	32253		13.042	0.80181	1		+		12936	18047	9361	9433	12600	12600					-0.056187895852872316
ETAPVAPLELP	11	Unmodified	_ETAPVAPLELP_					0	0	0			REV__ENSG00000168005|ENST00000294244|SPINDOC	REV__ENSG00000168005|ENST00000294244|SPINDOC	MULTI-MSMS	A375_MHC_IP_R1	1	379.9449157714844	3	379.544773	1135.61249	0.46362	0.00017596	-0.03056	-1.1599E-05	0.43306	0.00016436	379.54475579241694	56.473	0.81297	56.473	56.092	56.905	0					43	15	4	0	0	0	0.4583	1	20194	20194		21.799	5.2336	1	23275000	+		12937	20817	9362	9434	12601	12601					0.05010861583377846
ETAPVAPLELP	11	Unmodified	_ETAPVAPLELP_					0	0	0			REV__ENSG00000168005|ENST00000294244|SPINDOC	REV__ENSG00000168005|ENST00000294244|SPINDOC	MULTI-MSMS	A375_MHC_IP_R2	2	379.94464111328125	3	379.544773	1135.61249	-0.018336	-6.9593E-06	0.013502	5.1246E-06	-0.004834	-1.8347E-06	379.54472203979157	55.562	0.71015	56.312	55.984	56.694	0.75075					40	13	4	0	0	0	0.4583	1	20940	20940		21.799	5.2336	1	31475000	+		12938	20817	9362	9434	12602	12602					0.05010861583377846
ETAPVAPLELP	11	Unmodified	_ETAPVAPLELP_					0	0	0			REV__ENSG00000168005|ENST00000294244|SPINDOC	REV__ENSG00000168005|ENST00000294244|SPINDOC	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	379.544773	1135.61249	0.46362	0.00017596	-0.03056	-1.1599E-05	0.43306	0.00016436	379.54475579241694	56.473	0.81297	56.473	56.092	56.905	0	0.08019	-2.2657E-05	NaN	21.799	43	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23275000	+		12939	20817	9362	9434							0.05010861583377846
ETAPVAPLELP	11	Unmodified	_ETAPVAPLELP_					0	0	0			REV__ENSG00000168005|ENST00000294244|SPINDOC	REV__ENSG00000168005|ENST00000294244|SPINDOC	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	379.544773	1135.61249	-0.018336	-6.9593E-06	0.013502	5.1246E-06	-0.004834	-1.8347E-06	379.54472203979157	55.562	0.71015	56.312	55.984	56.694	0.75075	-0.08019	2.7514E-05	NaN	21.799	40	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31475000	+		12940	20817	9362	9434							0.05010861583377846
ETAQIQSHI	9	Unmodified	_ETAQIQSHI_					0	0	0		ENSG00000186049|ENST00000305748|KRT73;CON__Q32MB2;nc|ENSG00000186049|Q86Y46-2|KRT73;KRT73|p.E272K|1|0.07|ENSG00000186049|chr12:52614584-52614584|C/T|missense_variant	ENSG00000186049|ENST00000305748|KRT73	ENSG00000186049|ENST00000305748|KRT73	MULTI-SECPEP	A375_MHC_IP_R1	1	514.2005615234375	2	513.764363	1025.51417	-0.47314	-0.00024308	0.30798	0.00015823	-0.16516	-8.4855E-05	513.764370068101	33.92	0.40465	33.92	33.698	34.103	0					15	7	3	0	0	0	0.73363	1	11033	11033		10.824	0	1	2016900		+	12941	616	9363	9435	12603	12603					0.0024367805820020294
ETAQSKDELL	10	Unmodified	_ETAQSKDELL_					0	0	0			REV__ENSG00000138741|ENST00000379645|TRPC3	REV__ENSG00000138741|ENST00000379645|TRPC3	MULTI-SECPEP	A375_MHC_IP_R2	2	566.6937255859375	2	567.287868	1132.56118	-0.74695	-0.00042374	0.48318	0.0002741	-0.26377	-0.00014963	567.7878144228426	58.869	0.45694	59.616	59.336	59.793	0.74714					12	8	2	0	0	0	0.78945	1	22340	22340		13.906	0	1	2080400	+		12942	19116	9364	9436	12604	12604					0.0002049281868039543
ETARKFLYY	9	Unmodified	_ETARKFLYY_					0	0	0		ENSG00000115159|ENST00000438166|GPD2;nc|ENSG00000115159|P43304-2|GPD2;ENST00000464846.5_1_2:157427687-157435520:+|nuORF	ENSG00000115159|ENST00000438166|GPD2	ENSG00000115159|ENST00000438166|GPD2	MULTI-SECPEP	A375_MHC_IP_R1	1	596.2142944335938	2	595.813856	1189.61316	-0.31504	-0.00018771	-0.15762	-9.3912E-05	-0.47266	-0.00028162	595.8141592996826	47.602	0.45336	47.602	47.366	47.819	0					18	8	3	0	0	0	0.48845	1	16775	16775		32.786	17.947	1	2576800			12943	3275	9365	9437	12605	12605					0.025937010231018576
ETARKFLYY	9	Unmodified	_ETARKFLYY_					0	0	0		ENSG00000115159|ENST00000438166|GPD2;nc|ENSG00000115159|P43304-2|GPD2;ENST00000464846.5_1_2:157427687-157435520:+|nuORF	ENSG00000115159|ENST00000438166|GPD2	ENSG00000115159|ENST00000438166|GPD2	MULTI-SECPEP	A375_MHC_IP_R2	2	397.9447021484375	3	397.544996	1189.61316	0.076114	3.0259E-05	-0.13436	-5.3413E-05	-0.058244	-2.3154E-05	397.54492475241886	46.776	0.76314	47.538	47.054	47.817	0.76128					20	14	2	0	0	0	0.74169	1	17520	17520		11.495	7.3052	1	3182900			12944	3275	9365	9437	12606	12606					0.025937010231018576
ETARKFLYY	9	Unmodified	_ETARKFLYY_					0	0	0		ENSG00000115159|ENST00000438166|GPD2;nc|ENSG00000115159|P43304-2|GPD2;ENST00000464846.5_1_2:157427687-157435520:+|nuORF	ENSG00000115159|ENST00000438166|GPD2	ENSG00000115159|ENST00000438166|GPD2	MULTI-MATCH	A375_MHC_IP_R1	1		3	397.544996	1189.61316	-0.04397	-1.748E-05	0.08076	3.2106E-05	0.03679	1.4626E-05	397.54510428992904	47.676	0.45336	47.676	47.366	47.819	0	0.069352	0.00011202	NaN	11.495	16	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2681100			12945	3275	9365	9437							0.025937010231018576
ETATLRSGY	9	Unmodified	_ETATLRSGY_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-SECPEP	A375_MHC_IP_R1	1	498.6612548828125	2	499.251089	996.487624	-0.28404	-0.0001418	-2.0779	-0.0010374	-2.3619	-0.0011792	499.2508681931919	46.009	0.40601	46.009	45.789	46.195	0					12	7	3	0	0	0	0.65246	1	16072	16072		10.824	0	1	1654700			12946	7095	9366	9438	12607	12607					-0.010760108331396623
ETAVNGKKT	9	Unmodified	_ETAVNGKKT_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000032840	REV__CON__ENSEMBL:ENSBTAP00000032840	MSMS	A375_MHC_IP_R1	1	474.1824645996094	2	474.261456	946.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.7	1	144.7	144.2	145.2	0								0	0	0	0.15486	1	55487	55487		1.8442	0.36234	1		+	+	12947	15846	9367	9439	12608	12608					0.03296579546531575
ETAVPSLLHAV	11	Unmodified	_ETAVPSLLHAV_					0	0	0			REV__nc|ENSG00000243566|Q9BT76|UPK3B	REV__nc|ENSG00000243566|Q9BT76|UPK3B	MULTI-SECPEP	A375_MHC_IP_R1	1	378.9486083984375	3	379.548518	1135.62372	0.30401	0.00011539	0.1316	4.9948E-05	0.43561	0.00016534	379.5485382923511	46.413	0.55337	46.413	46.094	46.647	0					14	10	2	0	0	0	0.92254	1	16362	16362		10.315	0	1	2067300	+		12948	27526	9368	9440	12609	12609					0.06133683677512636
ETCCKGQH	8	Unmodified	_ETCCKGQH_					0	0	0			REV__ENST00000567840.5_1_15:43132615-43212683:-|nuORF	REV__ENST00000567840.5_1_15:43132615-43212683:-|nuORF	MSMS	A375_MHC_IP_R2	2	453.1583251953125	2	453.183837	904.353121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.007	1	47.768	47.268	48.268	0.76128								0	0	0	0.16876	1	17616	17616		5.7604	0	1		+		12949	26255	9369	9441	12610	12610					-0.1028811085104735
ETCEHCDYYPE	11	Unmodified	_ETCEHCDYYPE_					0	0	0			REV__nc|ENSG00000198300|Q9GZU2-2|PEG3	REV__nc|ENSG00000198300|Q9GZU2-2|PEG3	MSMS	A375_MHC_IP_R1	1	694.4808349609375	2	694.74211	1387.46967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.663	1	81.663	81.163	82.163	0								0	0	0	0.16307	1	29845	29845		2.7352	1.2533	1		+		12950	22361	9370	9442	12611	12611					-0.2085688193246824
ETCFCCAH	8	Unmodified	_ETCFCCAH_					0	0	0		ENSG00000163637|ENST00000638394|PRICKLE2	ENSG00000163637|ENST00000638394|PRICKLE2	ENSG00000163637|ENST00000638394|PRICKLE2	MULTI-SECPEP	A375_MHC_IP_R2	2	912.9752197265625	1	913.300106	912.292829	-0.22522	-0.00020569	1.996	0.001823	1.7708	0.0016173	913.3028706724884	117.43	1.0652	118.09	117.23	118.29	0.65961					31	20	2	0	0	0	0.972	1	44530	44530		5.7604	4.9668	1	19178000			12951	6700	9371	9443	12612	12612					-0.1668254450579525
ETCFICHR	8	Unmodified	_ETCFICHR_					0	0	0		ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	MULTI-SECPEP	A375_MHC_IP_R2	2	505.1533203125	2	504.723129	1007.43171	-0.82629	-0.00041705	0.47389	0.00023918	-0.35239	-0.00017786	504.72313586278113	41.366	0.45673	42.141	42.047	42.504	0.77451					12	8	2	0	0	0	0.972	1	15320	15320		13.508	13.508	1	1772500			12952	3328	9372	9444	12613	12613					-0.0717125854596361
ETCFWRRYKA	10	Unmodified	_ETCFWRRYKA_					0	0	0		ENST00000546323.5_1_12:27181251-27181347:+|nuORF	ENST00000546323.5_1_12:27181251-27181347:+|nuORF	ENST00000546323.5_1_12:27181251-27181347:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	453.9771728515625	3	453.892401	1358.65538	-0.37076	-0.00016829	0.74053	0.00033612	0.36976	0.00016783	453.89304463820775	19.423	0.20259	19.423	19.318	19.521	0					6	3	2	0	0	0	0.94269	1	4715	4715		3.3196	0.88486	1	1718200			12953	13329	9373	9445	12614	12614					-0.009606468401898383
ETCHVNFRMF	10	Unmodified	_ETCHVNFRMF_					0	0	0		ENSG00000204532|ENST00000534327|ZSCAN5C	ENSG00000204532|ENST00000534327|ZSCAN5C	ENSG00000204532|ENST00000534327|ZSCAN5C	MULTI-SECPEP	A375_MHC_IP_R2	2	428.6381530761719	3	428.526842	1282.5587	-0.47132	-0.00020197	-1.5376	-0.00065892	-2.009	-0.00086089	428.86020323170175	24.174	0.61163	24.817	24.398	25.009	0.64368					17	11	2	0	0	0	0.94587	1	7955	7955		0.13989	0.056541	1	1395900			12954	9453	9374	9446	12615	12615					-0.07127957391639939
ETCIPYPY	8	Unmodified	_ETCIPYPY_					0	0	0			REV__nc|ENSG00000004866|Q9NRC1|ST7	REV__nc|ENSG00000004866|Q9NRC1|ST7	MSMS	A375_MHC_IP_R2	2	493.12042236328125	2	493.220411	984.426269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.294	1	59.043	58.543	59.543	0.74894								0	0	0	0.16876	1	22053	22053		15.768	0.92995	1		+		12955	16103	9375	9447	12616	12616					-0.06656658856786635
ETCLHEYDE	9	Unmodified	_ETCLHEYDE_					0	0	0			REV__ENSG00000111405|ENST00000422538|ENDOU	REV__ENSG00000111405|ENST00000422538|ENDOU	MULTI-SECPEP	A375_MHC_IP_R2	2	570.35595703125	2	569.721504	1137.42845	-0.25656	-0.00014617	2.1094	0.0012018	1.8528	0.0010556	569.722922051142	63.908	0.50742	64.648	64.394	64.902	0.74022					13	9	2	0	0	0	0.62767	1	24275	24275		7.2892	0	1	979510	+		12956	17671	9376	9448	12617	12617					-0.13476274909635322
ETCMAYQGI	9	Unmodified	_ETCMAYQGI_					0	0	0		nc|ENSG00000101445|Q96T49-2|PPP1R16B;ENSG00000101445|ENST00000299824|PPP1R16B	nc|ENSG00000101445|Q96T49-2|PPP1R16B	nc|ENSG00000101445|Q96T49-2|PPP1R16B	MSMS	A375_MHC_IP_R2	2	508.2004089355469	2	508.214803	1014.41505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.891	1	64.632	64.132	65.132	0.74022								0	0	0	0.15486	1	24228	24228		8.5933	0	1				12957	2297	9377	9449	12618	12618					-0.09157804222559207
ETCMVPHYI	9	Unmodified	_ETCMVPHYI_					0	0	0			REV__ENSG00000129518|ENST00000250454|EAPP	REV__ENSG00000129518|ENST00000250454|EAPP	MULTI-SECPEP	A375_MHC_IP_R2	2	546.1695556640625	2	546.74627	1091.47799	-0.98724	-0.00053977	-0.070301	-3.8437E-05	-1.0575	-0.00057821	546.7459906792814	51.467	0.30305	52.219	52.017	52.321	0.75225					8	5	2	0	0	0	0.67221	1	19391	19391		4.756	0	1	548550	+		12958	18496	9378	9450	12619	12619					-0.06409238434525832
ETCPGLEQY	9	Carbamidomethyl (C)	_ETC(Carbamidomethyl (C))PGLEQY_	ETC(1)PGLEQY		ETC(79)PGLEQY		0	1	0		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000413611.2_1_1:146675128-146675437:-|nuORF	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-SECPEP	A375_MHC_IP_R2	2	549.132568359375	2	548.734414	1095.45428	-0.99981	-0.00054863	-1.8958	-0.0010403	-2.8956	-0.0015889	548.7334999962297	50.075	0.7123	50.829	50.497	51.209	0.75406					22	13	2	0	0	0	0.05021	1	18844	18844		78.728	27.098	1	3633400			12959	6184	9379	9451	12620	12620	40				-0.08963380667364618
ETCTLTNSV	9	Unmodified	_ETCTLTNSV_					0	0	0		ENST00000593157.5_1_19:13216299-13227549:-|nuORF;ENST00000590812.5_1_19:13226958-13227549:-|nuORF;ENST00000357720.8_1_19:13227157-13227549:-|nuORF	ENST00000593157.5_1_19:13216299-13227549:-|nuORF	ENST00000593157.5_1_19:13216299-13227549:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	483.6215515136719	2	484.223682	966.432811	-0.43879	-0.00021247	-1.9598	-0.00094896	-2.3986	-0.0011614	484.2228785622044	46.855	0.76994	46.855	46.596	47.366	0					19	14	2	0	0	0	0.69504	1	16573	16573		1.8442	0.36234	1	1722000			12960	13790	9380	9452	12621	12621					-0.05174765696074246
ETDAQSITY	9	Unmodified	_ETDAQSITY_					0	0	0		nc|ENSG00000160767|P81408-2|ENTREP3;nc|ENSG00000160767|P81408-3|ENTREP3;ENSG00000160767|ENST00000361361|ENTREP3;nc|ENSG00000160767|P81408-4|ENTREP3	nc|ENSG00000160767|P81408-2|ENTREP3	nc|ENSG00000160767|P81408-2|ENTREP3	MULTI-SECPEP	A375_MHC_IP_R2	2	514.6321411132812	2	514.232561	1026.45057	-0.88707	-0.00045616	0.031982	1.6446E-05	-0.85509	-0.00043971	514.2325460020776	44.808	0.76283	45.577	45.188	45.951	0.76909					36	14	3	0	0	0	0.034037	1	16677	16677		99.799	47.531	1	12494000			12961	6440	9381	9453	12622	12622					-0.06159727169551843
ETDARMEFY	9	Unmodified	_ETDARMEFY_					0	0	0		nc|ENSG00000180815|Q6ZN16-3|MAP3K15;ENST00000518578.5_1_X:19378869-19431499:-|nuORF	nc|ENSG00000180815|Q6ZN16-3|MAP3K15	nc|ENSG00000180815|Q6ZN16-3|MAP3K15	MSMS	A375_MHC_IP_R2	2	581.1663818359375	2	581.247689	1160.48082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.223	1	82.966	82.466	83.466	0.74293								0	0	0	0.1499	1	31234	31234		21.747	5.5975	1				12962	12973	9382	9454	12623	12623					-0.09299691776004693
ETDDCPYISY	10	Unmodified	_ETDDCPYISY_					0	0	0		ENST00000508189.1_1_4:162300107-162300218:+|nuORF	ENST00000508189.1_1_4:162300107-162300218:+|nuORF	ENST00000508189.1_1_4:162300107-162300218:+|nuORF	MSMS	A375_MHC_IP_R1	1	603.168212890625	2	603.236987	1204.45942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.373	1	36.373	35.873	36.873	0								0	0	0	0.15158	1	12171	12171		14.838	4.7643	1				12963	12872	9383	9455	12624	12624					-0.13463121595395933
ETDDEEDGDGD	11	Unmodified	_ETDDEEDGDGD_					0	0	0		ENST00000432293.2_1_7:35922096-35937941:+|nuORF	ENST00000432293.2_1_7:35922096-35937941:+|nuORF	ENST00000432293.2_1_7:35922096-35937941:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	599.0884399414062	2	598.689109	1195.36367	-0.33085	-0.00019807	-0.39884	-0.00023878	-0.72968	-0.00043685	599.1901261611235	72.942	0.55888	72.942	72.676	73.235	0					13	10	2	0	0	0	0.99955	1	26622	26622		0.26902	0.26902	1	1676400			12964	11876	9384	9456	12625	12625					-0.226202229726141
ETDDVFDALM	10	Unmodified	_ETDDVFDALM_					0	0	0		nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000083307|ENST00000646743|GRHL2	nc|ENSG00000083307|Q6ISB3-2|GRHL2	nc|ENSG00000083307|Q6ISB3-2|GRHL2	MSMS	A375_MHC_IP_R1	1	578.2953491210938	2	578.247354	1154.48016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.587	1	85.587	85.087	86.087	0								0	0	0	0.15435	1	31368	31368		6.7232	1.9672	1				12965	1775	9385	9457	12626	12626					-0.09090531215747433
ETDEKDFYLY	10	Unmodified	_ETDEKDFYLY_					0	0	0		ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24	ENST00000555762.1_1_14:94524146-94547480:-|nuORF	ENST00000555762.1_1_14:94524146-94547480:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	662.6941528320312	2	661.792983	1321.57141	-0.51937	-0.00034371	-0.096904	-6.413E-05	-0.61627	-0.00040784	661.7928021901339	74.933	0.65848	74.933	74.604	75.262	0					29	12	3	0	0	0	0.037053	1	27264	27264		79.596	21.874	1	10771000			12966	1934	9386	9458	12627	12627					-0.0765094424673407
ETDEKDFYLY	10	Unmodified	_ETDEKDFYLY_					0	0	0		ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24	ENST00000555762.1_1_14:94524146-94547480:-|nuORF	ENST00000555762.1_1_14:94524146-94547480:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	662.1926879882812	2	661.792983	1321.57141	-0.89773	-0.00059411	0.4084	0.00027028	-0.48932	-0.00032383	661.7931562240908	74.295	0.60863	75.032	74.757	75.365	0.73751					33	11	4	0	0	0	0.011525	1	28156	28156		117.76	38.164	1	10772000			12967	1934	9386	9458	12628	12628					-0.0765094424673407
ETDEKDFYLYY	11	Unmodified	_ETDEKDFYLYY_					0	0	0		ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24	ENST00000555762.1_1_14:94524146-94547480:-|nuORF	ENST00000555762.1_1_14:94524146-94547480:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	743.7241821289062	2	743.324647	1484.63474	-0.46292	-0.0003441	-0.019494	-1.449E-05	-0.48241	-0.00035859	743.3245443116296	89.171	0.65859	89.171	88.919	89.577	0					30	12	4	0	0	0	0.025265	2	32729	32729;32820		84.522	69.274	1	8404000			12968	1934	9387	9459	12629;12630	12629					-0.08819003529492875
ETDEKDFYLYY	11	Unmodified	_ETDEKDFYLYY_					0	0	0		ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24	ENST00000555762.1_1_14:94524146-94547480:-|nuORF	ENST00000555762.1_1_14:94524146-94547480:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	743.324647	1484.63474	-0.78007	-0.00057984	0.1951	0.00014502	-0.58497	-0.00043482	743.3247135822527	88.674	0.60884	89.406	89.026	89.635	0.7318	0.11749	0.00014437	NaN	84.522	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11880000			12969	1934	9387	9459							-0.08819003529492875
ETDEPLNIYFG	11	Unmodified	_ETDEPLNIYFG_					0	0	0			REV__nc|ENSG00000129691|Q9UBL3-2|ASH2L	REV__nc|ENSG00000129691|Q9UBL3-2|ASH2L	MULTI-SECPEP	A375_MHC_IP_R2	2	432.6708679199219	3	433.203076	1296.5874	-0.080206	-3.4745E-05	0.52125	0.00022581	0.44105	0.00019106	433.20313992350316	43.515	0.35335	44.287	44.13	44.483	0.7724					12	6	2	0	0	0	0.99331	1	16272	16272		2.4348	0	1	1833200	+		12970	18508	9388	9460	12631	12631					-0.04903238009865163
ETDEQRLRDEY	11	Unmodified	_ETDEQRLRDEY_					0	0	0		ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	MULTI-MSMS	A375_MHC_IP_R1	1	485.6230773925781	3	485.22331	1452.6481	-0.36909	-0.00017909	-0.095871	-4.6519E-05	-0.46496	-0.00022561	485.2231639345872	28.191	0.4535	28.191	27.987	28.44	0					21	8	4	0	0	0	0.20256	1	8687	8687		54.259	40.724	1	5810500			12971	2549	9389	9461	12632	12632					-0.06011752697554584
ETDEQRLRDEY	11	Unmodified	_ETDEQRLRDEY_					0	0	0		ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	MULTI-MSMS	A375_MHC_IP_R2	2	485.6229553222656	3	485.22331	1452.6481	-0.58571	-0.0002842	0.019789	9.6019E-06	-0.56592	-0.0002746	485.5576253868939	27.684	0.45488	28.362	28.149	28.604	0.67857					24	8	4	0	0	0	0.20256	1	9509	9509		54.259	40.088	1	7372200			12972	2549	9389	9461	12633	12633					-0.06011752697554584
ETDFLHVIF	9	Unmodified	_ETDFLHVIF_					0	0	0		ENSG00000182791|ENST00000333861|CCDC87	ENSG00000182791|ENST00000333861|CCDC87	ENSG00000182791|ENST00000333861|CCDC87	MSMS	A375_MHC_IP_R2	2	560.7059936523438	2	560.787307	1119.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.923	1	80.668	80.168	81.168	0.74474								0	0	0	0.1521	1	30340	30340		18.135	1.1927	1				12973	8438	9390	9462	12634	12634					0.005063232404154405
ETDGAQVGRY	10	Unmodified	_ETDGAQVGRY_					0	0	0		ENST00000469416.1_1_1:40916330-40916492:+|nuORF;ENST00000484445.5_1_1:40915787-40916492:+|nuORF	ENST00000469416.1_1_1:40916330-40916492:+|nuORF	ENST00000469416.1_1_1:40916330-40916492:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	548.656494140625	2	548.256902	1094.49925	-0.65214	-0.00035754	0.075244	4.1253E-05	-0.57689	-0.00031629	548.2569562119096	24.572	0.60561	24.572	24.347	24.953	0					18	11	2	0	0	0	0.0035315	1	7009	7009		137.42	72.189	1	16400000			12974	12315	9391	9463	12635	12635					-0.04421813809790365
ETDGAQVGRY	10	Unmodified	_ETDGAQVGRY_					0	0	0		ENST00000469416.1_1_1:40916330-40916492:+|nuORF;ENST00000484445.5_1_1:40915787-40916492:+|nuORF	ENST00000469416.1_1_1:40916330-40916492:+|nuORF	ENST00000469416.1_1_1:40916330-40916492:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	548.6566162109375	2	548.256902	1094.49925	-1.0397	-0.00057003	-0.53211	-0.00029173	-1.5718	-0.00086176	548.2568855143744	24.023	0.61163	24.663	24.394	25.006	0.64035					20	11	3	0	0	0	0.011212	1	7843	7843		125.53	60.294	1	6450000			12975	12315	9391	9463	12636	12636					-0.04421813809790365
ETDGCDCF	8	Unmodified	_ETDGCDCF_					0	0	0			REV__ENSG00000159459|ENST00000290650|UBR1;REV__nc|ENSG00000024048|Q8IWV8|UBR2	REV__ENSG00000159459|ENST00000290650|UBR1	MSMS	A375_MHC_IP_R2	2	445.1265563964844	2	445.138761	888.262969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.784	1	34.536	34.036	35.036	0.75225								0	0	0	0.16876	1	12129	12129		5.7604	3.1829	1		+		12976	20123;16285	9392	9464	12637	12637					-0.18563204970132574
ETDHINQIGY	10	Unmodified	_ETDHINQIGY_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-MSMS	A375_MHC_IP_R1	1	596.6807861328125	2	595.277835	1188.54112	-0.61999	-0.00036906	0.33052	0.00019675	-0.28946	-0.00017231	595.2779624772674	41.702	0.66262	41.702	41.419	42.082	0					44	12	5	0	0	0	0.52785	1	14501	14501		26.268	12.362	1	36307000			12977	3067	9393	9465	12638	12638					-0.045612581212935766
ETDIVVDHY	9	Unmodified	_ETDIVVDHY_					0	0	0		nc|ENSG00000126602|Q12931-2|TRAP1;ENSG00000126602|ENST00000246957|TRAP1	nc|ENSG00000126602|Q12931-2|TRAP1	nc|ENSG00000126602|Q12931-2|TRAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	545.1539306640625	2	545.756204	1089.49785	-0.10955	-5.9786E-05	0.12109	6.6086E-05	0.011545	6.3008E-06	545.7563454221864	48.646	0.55689	48.646	48.426	48.983	0					16	10	2	0	0	0	0.3607	1	17121	17121		34.102	24.029	1	2145900			12978	4052	9394	9466	12639	12639					-0.04331447898562146
ETDIVVDHY	9	Unmodified	_ETDIVVDHY_					0	0	0		nc|ENSG00000126602|Q12931-2|TRAP1;ENSG00000126602|ENST00000246957|TRAP1	nc|ENSG00000126602|Q12931-2|TRAP1	nc|ENSG00000126602|Q12931-2|TRAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	545.1533813476562	2	545.756204	1089.49785	-0.68349	-0.00037302	1.1221	0.00061241	0.43865	0.00023939	545.7570114198782	47.945	0.86005	48.707	48.073	48.933	0.76128					19	16	2	0	0	0	0.14422	1	17964	17964		43.858	38.561	1	1440600			12979	4052	9394	9466	12640	12640					-0.04331447898562146
ETDKIINY	8	Unmodified	_ETDKIINY_					0	0	0		NCOA5|p.S449Afs*74|1|0.08|ENSG00000124160|chr20:46062695-46062695|T/-|frameshift_variant;ENSG00000124160|ENST00000290231|NCOA5	NCOA5|p.S449Afs*74|1|0.08|ENSG00000124160|chr20:46062695-46062695|T/-|frameshift_variant	NCOA5|p.S449Afs*74|1|0.08|ENSG00000124160|chr20:46062695-46062695|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	498.65576171875	2	498.25584	994.497126	-0.41744	-0.00020799	-0.059625	-2.9708E-05	-0.47707	-0.0002377	498.2557363520864	43.078	0.55706	43.851	43.623	44.181	0.7724					25	10	3	0	0	0	0.68328	1	16015	16015		39.957	11.47	1	11088000			12980	14984	9395	9467	12641	12641					-0.0003424254761057455
ETDKITLEV	9	Unmodified	_ETDKITLEV_					0	0	0		ENSG00000114573|ENST00000273398|ATP6V1A;nc|ENSG00000114573|P38606-2|ATP6V1A	ENSG00000114573|ENST00000273398|ATP6V1A	ENSG00000114573|ENST00000273398|ATP6V1A	MULTI-MSMS	A375_MHC_IP_R1	1	524.6817626953125	2	524.282054	1046.54956	-0.38989	-0.00020441	-0.11588	-6.0754E-05	-0.50577	-0.00026517	524.2818368417273	62.318	0.76782	62.318	61.994	62.762	0					42	14	4	0	0	0	0.0096822	1	22490	22490		110.55	38.63	1	13097000			12981	3230	9396	9468	12642	12642					0.028142957953377845
ETDKITLEV	9	Unmodified	_ETDKITLEV_					0	0	0		ENSG00000114573|ENST00000273398|ATP6V1A;nc|ENSG00000114573|P38606-2|ATP6V1A	ENSG00000114573|ENST00000273398|ATP6V1A	ENSG00000114573|ENST00000273398|ATP6V1A	MULTI-MSMS	A375_MHC_IP_R2	2	524.6815795898438	2	524.282054	1046.54956	-0.83865	-0.00043969	-0.46889	-0.00024583	-1.3075	-0.00068552	524.2816895046872	61.565	0.80692	62.31	61.919	62.726	0.74504					45	15	4	0	0	0	0.012447	1	23293	23293		93.166	30.593	1	14377000			12982	3230	9396	9468	12643	12643					0.028142957953377845
ETDKNGFLQY	10	Unmodified	_ETDKNGFLQY_					0	0	0		nc|ENSG00000106733|Q9NWW6-2|NMRK1;ENSG00000106733|ENST00000361092|NMRK1	nc|ENSG00000106733|Q9NWW6-2|NMRK1	nc|ENSG00000106733|Q9NWW6-2|NMRK1	MULTI-MSMS	A375_MHC_IP_R1	1	607.7115478515625	2	607.788035	1213.56152	-0.29257	-0.00017782	0.034834	2.1172E-05	-0.25774	-0.00015665	607.7880224182386	57.322	1.2211	57.322	56.905	58.126	0					74	23	5	0	0	0	0.0068576	1	20522	20522		132.38	90.424	1	115170000			12983	2709	9397	9469	12644	12644					-0.03672087461472984
ETDKNGFLQY	10	Unmodified	_ETDKNGFLQY_					0	0	0		nc|ENSG00000106733|Q9NWW6-2|NMRK1;ENSG00000106733|ENST00000361092|NMRK1	nc|ENSG00000106733|Q9NWW6-2|NMRK1	nc|ENSG00000106733|Q9NWW6-2|NMRK1	MULTI-MSMS	A375_MHC_IP_R2	2	607.7230834960938	2	607.788035	1213.56152	-0.8169	-0.0004965	0.078823	4.7907E-05	-0.73808	-0.0004486	607.7880592388434	56.583	1.173	57.333	56.847	58.02	0.75015					76	22	5	0	0	0	0.0019766	1	21406	21406		139.78	90.228	1	120580000			12984	2709	9397	9469	12645	12645					-0.03672087461472984
ETDKVKLTW	9	Unmodified	_ETDKVKLTW_					0	0	0		nc|ENSG00000131620|Q5XXA6-4|ANO1;nc|ENSG00000131620|Q5XXA6-3|ANO1;nc|ENSG00000131620|Q5XXA6-2|ANO1	nc|ENSG00000131620|Q5XXA6-4|ANO1	nc|ENSG00000131620|Q5XXA6-4|ANO1	MULTI-MSMS	A375_MHC_IP_R1	1	560.7058715820312	2	560.305864	1118.59717	-0.6394	-0.00035826	0.89398	0.0005009	0.25459	0.00014265	560.3060567488351	80.718	0.55798	80.718	80.492	81.049	0					17	10	2	0	0	0	0.46357	1	29494	29494		29.082	16.039	1	2737900			12985	14603	9398	9470	12646	12646					0.04261994786179457
ETDKVKLTW	9	Unmodified	_ETDKVKLTW_					0	0	0		nc|ENSG00000131620|Q5XXA6-4|ANO1;nc|ENSG00000131620|Q5XXA6-3|ANO1;nc|ENSG00000131620|Q5XXA6-2|ANO1	nc|ENSG00000131620|Q5XXA6-4|ANO1	nc|ENSG00000131620|Q5XXA6-4|ANO1	MULTI-MATCH	A375_MHC_IP_R2	2		2	560.305864	1118.59717	-0.59573	-0.00033379	-0.18271	-0.00010237	-0.77844	-0.00043616	560.3057466348708	79.873	0.45707	80.618	80.453	80.91	0.74474	-0.050297	-0.00027753	NaN	29.082	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2125500			12986	14603	9398	9470							0.04261994786179457
ETDLDDDDDD	10	Unmodified	_ETDLDDDDDD_					0	0	0			REV__ENST00000527321.1_1_11:77851057-77852843:+|nuORF	REV__ENST00000527321.1_1_11:77851057-77852843:+|nuORF	MSMS	A375_MHC_IP_R2	2	584.1475219726562	2	584.194027	1166.3735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.689	1	90.421	89.921	90.921	0.7318								0	0	0	0.15451	1	34128	34128		6.2058	2.6093	1		+		12987	25786	9399	9471	12647	12647					-0.2030303496721899
ETDLLDIRSEY	11	Unmodified	_ETDLLDIRSEY_					0	0	0		nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11	nc|ENSG00000122359|P50995-2|ANXA11	nc|ENSG00000122359|P50995-2|ANXA11	MULTI-MSMS	A375_MHC_IP_R1	1	678.864013671875	2	677.330264	1352.64598	-0.79521	-0.00053862	0.13102	8.8747E-05	-0.66418	-0.00044987	677.3303530930123	86.653	1.2677	86.653	86.274	87.542	0					85	24	5	0	0	0	0.4047	1	31913	31913		38.615	17.078	1	191600000			12988	3773	9400	9472	12648	12648					-0.016241814353634254
ETDLLDIRSEY	11	Unmodified	_ETDLLDIRSEY_					0	0	0		nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11	nc|ENSG00000122359|P50995-2|ANXA11	nc|ENSG00000122359|P50995-2|ANXA11	MULTI-MSMS	A375_MHC_IP_R2	2	677.7302856445312	2	677.330264	1352.64598	-0.5033	-0.0003409	-0.15998	-0.00010836	-0.66328	-0.00044926	677.3301552530903	86.087	1.6289	86.82	86.388	88.017	0.733					99	31	6	0	0	0	1.4017E-08	2	32856	32677;32856		164.85	119.11	1	211200000			12989	3773	9400	9472	12649;12650	12650					-0.016241814353634254
ETDLRNHFY	9	Unmodified	_ETDLRNHFY_					0	0	0		ENSG00000086589|ENST00000199814|RBM22;nc|ENSG00000086589|Q9NW64-2|RBM22	ENSG00000086589|ENST00000199814|RBM22	ENSG00000086589|ENST00000199814|RBM22	MULTI-MSMS	A375_MHC_IP_R1	1	598.6790161132812	2	597.780544	1193.54654	-0.59484	-0.00035559	-0.44714	-0.00026729	-1.042	-0.00062287	597.7807945762339	37.938	0.66152	37.938	37.607	38.268	0					33	12	4	0	0	0	0.033557	2	12814	12791;12814		71.922	49.186	1	21079000			12990	1839	9401	9473	12651;12652	12652					-0.04249534538826083
ETDLRNHFY	9	Unmodified	_ETDLRNHFY_					0	0	0		ENSG00000086589|ENST00000199814|RBM22;nc|ENSG00000086589|Q9NW64-2|RBM22	ENSG00000086589|ENST00000199814|RBM22	ENSG00000086589|ENST00000199814|RBM22	MULTI-SECPEP	A375_MHC_IP_R1	1	399.25616455078125	3	398.856122	1193.54654	-0.40723	-0.00016242	0.68772	0.0002743	0.2805	0.00011188	398.8563657304937	37.938	0.81538	37.938	37.556	38.371	0					46	15	5	0	0	0	0.48845	1	12806	12806		30.703	14.138	1	56684000			12991	1839	9401	9473	12653	12653					-0.04249534538826083
ETDLRNHFY	9	Unmodified	_ETDLRNHFY_					0	0	0		ENSG00000086589|ENST00000199814|RBM22;nc|ENSG00000086589|Q9NW64-2|RBM22	ENSG00000086589|ENST00000199814|RBM22	ENSG00000086589|ENST00000199814|RBM22	MULTI-MSMS	A375_MHC_IP_R2	2	399.25604248046875	3	398.856122	1193.54654	-0.63304	-0.00025249	0.38377	0.00015307	-0.24928	-9.9425E-05	398.85624888260986	37.207	0.71288	37.978	37.665	38.378	0.7709					41	13	4	0	0	0	0.064406	1	13553	13553		53.404	29.614	1	40086000			12992	1839	9401	9473	12654	12654					-0.04249534538826083
ETDLRNHFY	9	Unmodified	_ETDLRNHFY_					0	0	0		ENSG00000086589|ENST00000199814|RBM22;nc|ENSG00000086589|Q9NW64-2|RBM22	ENSG00000086589|ENST00000199814|RBM22	ENSG00000086589|ENST00000199814|RBM22	MULTI-MSMS	A375_MHC_IP_R2	2	598.1806030273438	2	597.780544	1193.54654	-1.1205	-0.00066983	-0.47531	-0.00028413	-1.5958	-0.00095396	597.7809016898883	37.188	0.6591	37.959	37.564	38.223	0.7709					30	12	4	0	0	0	0.007896	1	13576	13576		129.77	93.266	1	17639000			12993	1839	9401	9473	12655	12655					-0.04249534538826083
ETDNFKLPN	9	Unmodified	_ETDNFKLPN_					0	0	0		ENSG00000156103|ENST00000286614|MMP16;nc|ENSG00000156103|P51512-2|MMP16	ENSG00000156103|ENST00000286614|MMP16	ENSG00000156103|ENST00000286614|MMP16	MULTI-MSMS	A375_MHC_IP_R1	1	539.6637573242188	2	539.264196	1076.51384	-0.82485	-0.00044481	-0.0057154	-3.0821E-06	-0.83057	-0.0004479	539.264070106748	86.657	0.86029	86.657	86.325	87.186	0					38	16	4	0	0	0	0.55471	1	31753	31753		17.113	0.96379	1	5042700			12994	6173	9402	9474	12656	12656					-0.021357416616410774
ETDNMFNRY	9	Oxidation (M)	_ETDNM(Oxidation (M))FNRY_		ETDNM(1)FNRY		ETDNM(130)FNRY	0	0	1		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103612112-103682069:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	MULTI-MSMS	A375_MHC_IP_R1	1	603.6476440429688	2	603.24822	1204.48189	-0.68034	-0.00041041	-0.029885	-1.8028E-05	-0.71022	-0.00042844	603.2483999801253	30.576	0.70757	30.576	30.2	30.908	0					37	13	4	0	0	0	0.0054362	1	9650	9650		134.3	98.169	1	14951000			12995	2865	9403	9475	12657	12657		132			-0.11217477407103615
ETDNMFNRY	9	Oxidation (M)	_ETDNM(Oxidation (M))FNRY_		ETDNM(1)FNRY		ETDNM(56)FNRY	0	0	1		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103612112-103682069:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	MULTI-MSMS	A375_MHC_IP_R1	1	603.6480712890625	2	603.24822	1204.48189	-0.37019	-0.00022332	0.079	4.7657E-05	-0.29119	-0.00017566	603.2482140570786	33.745	2.0252	33.745	32.887	34.912	0					69	39	2	0	0	0	0.070818	2	11117	10855;11117		56.177	34.43	1	3275900			12996	2865	9403	9475	12658;12659	12659		132			-0.11217477407103615
ETDNMFNRY	9	Oxidation (M)	_ETDNM(Oxidation (M))FNRY_		ETDNM(1)FNRY		ETDNM(100)FNRY	0	0	1		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103612112-103682069:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	MULTI-MSMS	A375_MHC_IP_R2	2	603.6478271484375	2	603.24822	1204.48189	-0.78939	-0.0004762	0.00061278	3.6966E-07	-0.78877	-0.00047583	603.2484354699345	29.883	0.75834	30.582	30.286	31.044	0.69872					45	14	4	0	0	0	0.009271	1	10423	10423		103.75	70.963	1	18049000			12997	2865	9403	9475	12660	12660		132			-0.11217477407103615
ETDNMFNRY	9	Oxidation (M)	_ETDNM(Oxidation (M))FNRY_		ETDNM(1)FNRY		ETDNM(75)FNRY	0	0	1		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103612112-103682069:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	MULTI-MSMS	A375_MHC_IP_R2	2	603.6478881835938	2	603.24822	1204.48189	-0.75834	-0.00045747	0.12606	7.6048E-05	-0.63228	-0.00038142	603.2482580391555	33.311	1.5742	34.064	33.229	34.803	0.75225					54	30	2	0	0	0	0.030038	1	11856	11856		74.929	55.672	1	2820800			12998	2865	9403	9475	12661	12661		132			-0.11217477407103615
ETDNMFNRY	9	Unmodified	_ETDNMFNRY_					0	0	0		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103612112-103682069:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	MULTI-MSMS	A375_MHC_IP_R1	1	595.6502075195312	2	595.250763	1188.48697	-0.12652	-7.5313E-05	-0.35977	-0.00021415	-0.48629	-0.00028947	595.2506029816816	48.073	0.65749	48.073	47.768	48.426	0					31	12	4	0	0	0	0.0011619	2	16908	16884;16908		152.41	120.11	1	17670000			12999	2865	9403	9476	12662;12663	12663					-0.09973173544494784
ETDNMFNRY	9	Unmodified	_ETDNMFNRY_					0	0	0		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103612112-103682069:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	MULTI-SECPEP	A375_MHC_IP_R2	2	595.650390625	2	595.250763	1188.48697	-0.39826	-0.00023706	0.55125	0.00032813	0.15299	9.1068E-05	595.2507718807918	47.369	0.76404	48.131	47.867	48.632	0.76128					48	14	5	0	0	0	0.010802	1	17728	17728		152.41	118.01	1	21077000			13000	2865	9403	9476	12664	12664					-0.09973173544494784
ETDNNIVVY	9	Unmodified	_ETDNNIVVY_					0	0	0		ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	MULTI-MSMS	A375_MHC_IP_R1	1	534.6793823242188	2	533.756204	1065.49785	-0.84806	-0.00045266	0.58237	0.00031085	-0.26569	-0.00014181	533.7564941202022	66.317	1.1194	66.317	65.921	67.04	0					61	21	4	0	0	0	0.047602	1	23973	23973		65.235	29.108	1	51183000			13001	5865	9404	9477	12665	12665					-0.03227447898552782
ETDNNIVVY	9	Unmodified	_ETDNNIVVY_					0	0	0		ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1560668945312	2	533.756204	1065.49785	-0.93903	-0.00050121	0.20951	0.00011183	-0.72952	-0.00038939	533.756275218948	65.662	1.1724	66.4	65.968	67.14	0.73811					64	22	4	0	0	0	0.059859	1	24803	24803		81.89	25.713	1	53467000			13002	5865	9404	9477	12666	12666					-0.03227447898552782
ETDNPRTTLVY	11	Unmodified	_ETDNPRTTLVY_					0	0	0		ENSG00000075223|ENST00000265361|SEMA3C;nc|ENSG00000075223|Q99985-2|SEMA3C;ENST00000458729.5_1_7:80422797-80546000:-|nuORF;SEMA3C|p.F353Lfs*11|1|0.06|ENSG00000075223|chr7:80798164-80798164|A/-|frameshift_variant	ENSG00000075223|ENST00000265361|SEMA3C	ENSG00000075223|ENST00000265361|SEMA3C	MULTI-MSMS	A375_MHC_IP_R1	1	655.2252807617188	2	654.825149	1307.63574	-0.58942	-0.00038596	0.055348	3.6243E-05	-0.53407	-0.00034972	654.8252124735645	46.892	0.66738	46.892	46.647	47.315	0					36	12	4	0	0	0	0.00059444	1	16469	16469		109.15	87.609	1	12820000			13003	1603	9405	9478	12667	12667					-0.0057674436993693234
ETDNPRTTLVY	11	Unmodified	_ETDNPRTTLVY_					0	0	0		ENSG00000075223|ENST00000265361|SEMA3C;nc|ENSG00000075223|Q99985-2|SEMA3C;ENST00000458729.5_1_7:80422797-80546000:-|nuORF;SEMA3C|p.F353Lfs*11|1|0.06|ENSG00000075223|chr7:80798164-80798164|A/-|frameshift_variant	ENSG00000075223|ENST00000265361|SEMA3C	ENSG00000075223|ENST00000265361|SEMA3C	MULTI-MSMS	A375_MHC_IP_R2	2	655.72607421875	2	654.825149	1307.63574	-0.76125	-0.00049849	0.23533	0.0001541	-0.52592	-0.00034439	654.8252483332676	46.166	0.81279	46.931	46.654	47.466	0.76519					34	15	3	0	0	0	0.57844	1	17264	17264		24.991	16.835	1	13733000			13004	1603	9405	9478	12668	12668					-0.0057674436993693234
ETDPDAQAKAY	11	Unmodified	_ETDPDAQAKAY_					0	0	0		ENSG00000132004|ENST00000393261|FBXW9;nc|ENSG00000132004|Q5XUX1-2|FBXW9	ENSG00000132004|ENST00000393261|FBXW9	ENSG00000132004|ENST00000393261|FBXW9	MULTI-MSMS	A375_MHC_IP_R1	1	605.1747436523438	2	604.775125	1207.5357	-0.58088	-0.0003513	0.027815	1.6822E-05	-0.55306	-0.00033448	604.7750657781366	23.932	0.65979	23.932	23.787	24.447	0					32	12	3	0	0	0	5.617E-15	2	6670	6670;6809		190.03	136.63	1	35796000			13005	4367	9406	9479	12669;12670	12669					-0.05976981703747697
ETDPDAQAKAY	11	Unmodified	_ETDPDAQAKAY_					0	0	0		ENSG00000132004|ENST00000393261|FBXW9;nc|ENSG00000132004|Q5XUX1-2|FBXW9	ENSG00000132004|ENST00000393261|FBXW9	ENSG00000132004|ENST00000393261|FBXW9	MULTI-MSMS	A375_MHC_IP_R2	2	605.1744384765625	2	604.775125	1207.5357	-0.74077	-0.000448	-0.047543	-2.8753E-05	-0.78831	-0.00047675	604.7750188355418	23.375	0.45495	24.005	23.828	24.283	0.63014					25	8	5	0	0	0	3.8708E-17	2	7496	7496;7570		202.97	145.25	1	33496000			13006	4367	9406	9479	12671;12672	12671					-0.05976981703747697
ETDPDAQAKAY	11	Unmodified	_ETDPDAQAKAY_					0	0	0		ENSG00000132004|ENST00000393261|FBXW9;nc|ENSG00000132004|Q5XUX1-2|FBXW9	ENSG00000132004|ENST00000393261|FBXW9	ENSG00000132004|ENST00000393261|FBXW9	MULTI-MSMS	A375_MHC_IP_R2	2	605.1744995117188	2	604.775125	1207.5357	-0.69383	-0.00041961	-0.11459	-6.9302E-05	-0.80842	-0.00048891	604.7750015173726	23.881	0.45924	24.511	24.232	24.691	0.63014					18	8	3	0	0	0	0.0010266	1	7788	7788		103.82	63.874	1	10265000			13007	4367	9406	9479	12673	12673					-0.05976981703747697
ETDPFVQEF	9	Unmodified	_ETDPFVQEF_					0	0	0		nc|ENSG00000126070|Q9H9G7-2|AGO3;ENSG00000126070|ENST00000373191|AGO3	nc|ENSG00000126070|Q9H9G7-2|AGO3	nc|ENSG00000126070|Q9H9G7-2|AGO3	MULTI-SECPEP	A375_MHC_IP_R2	2	556.6500244140625	2	556.250754	1110.48696	-0.77457	-0.00043085	0.87066	0.0004843	0.096091	5.3451E-05	556.2512587349889	102.44	0.71212	103.21	102.97	103.68	0.76428					21	13	3	0	0	0	0.38578	1	38826	38826		41.84	5.7126	1	1323200			13008	4023	9407	9480	12674	12674					-0.06386850272861011
ETDPGMVHL	9	Oxidation (M)	_ETDPGM(Oxidation (M))VHL_		ETDPGM(1)VHL		ETDPGM(40)VHL	0	0	1		ENST00000548939.1_1_12:70732225-70736007:+|nuORF;nc|ENSG00000111596|Q9NZN8-3|CNOT2;nc|ENSG00000111596|Q9NZN8-2|CNOT2;nc|ENSG00000111596|Q9NZN8-4|CNOT2;nc|ENSG00000111596|Q9NZN8-5|CNOT2;ENSG00000111596|ENST00000229195|CNOT2	ENST00000548939.1_1_12:70732225-70736007:+|nuORF	ENST00000548939.1_1_12:70732225-70736007:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.9803771972656	2	507.731674	1013.4488	-0.48716	-0.00024734	-0.12579	-6.3865E-05	-0.61294	-0.00031121	507.7316678743907	40.11	0.56076	40.11	39.794	40.355	0					22	10	3	0	0	0	0.13538	1	13736	13736		40.449	11.962	1	3067700			13009	2999	9408	9481	12675	12675		142			-0.057390594591424815
ETDPGMVHL	9	Unmodified	_ETDPGMVHL_					0	0	0		ENST00000548939.1_1_12:70732225-70736007:+|nuORF;nc|ENSG00000111596|Q9NZN8-3|CNOT2;nc|ENSG00000111596|Q9NZN8-2|CNOT2;nc|ENSG00000111596|Q9NZN8-4|CNOT2;nc|ENSG00000111596|Q9NZN8-5|CNOT2;ENSG00000111596|ENST00000229195|CNOT2	ENST00000548939.1_1_12:70732225-70736007:+|nuORF	ENST00000548939.1_1_12:70732225-70736007:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	500.4482116699219	2	499.734217	997.453881	-0.83333	-0.00041644	-2.3695	-0.0011841	-3.2028	-0.0016006	499.7342082310987	54.203	0.30357	54.953	54.814	55.118	0.75075					7	5	2	0	0	0	0.36419	1	20427	20427		32.117	17.535	1	1508900			13010	2999	9408	9482	12676	12676					-0.044947555965336505
ETDPQTISAY	10	Unmodified	_ETDPQTISAY_					0	0	0		ENSG00000164880|ENST00000404767|INTS1;ENST00000468115.1_1_7:1523234-1533501:-|nuORF	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	A375_MHC_IP_R2	2	562.6846313476562	2	562.758943	1123.50333	-0.75646	-0.00042571	-2.2833	-0.0012849	-3.0397	-0.0017106	562.7576293264664	51.506	0.35402	52.258	52.017	52.372	0.75225					10	6	2	0	0	0	0.44858	1	19346	19346		31.268	3.6395	1	1142700			13011	6889	9409	9483	12677	12677					-0.05347769106742817
ETDQAKEARQ	10	Unmodified	_ETDQAKEARQ_					0	0	0			REV__ENSG00000149091|ENST00000456247|DGKZ	REV__ENSG00000149091|ENST00000456247|DGKZ	MULTI-SECPEP	A375_MHC_IP_R2	2	392.6313781738281	3	392.526553	1174.55783	-0.50624	-0.00019871	3.3408	0.0013113	2.8345	0.0011126	392.86322432880365	20.003	0.50521	20.613	20.298	20.803	0.61029					16	7	3	0	0	0	0.91909	1	6162	6162		0.50596	0	1	1532200	+		13012	19660	9410	9484	12678	12678					-0.022467572353207288
ETDRGMSAEY	10	Oxidation (M)	_ETDRGM(Oxidation (M))SAEY_		ETDRGM(1)SAEY		ETDRGM(130)SAEY	0	0	1		ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-MSMS	A375_MHC_IP_R1	1	588.13720703125	2	587.737685	1173.46082	-0.070904	-4.1673E-05	-0.32824	-0.00019292	-0.39914	-0.00023459	587.7375845716933	21.024	1.6285	21.024	20.638	22.267	0					87	31	4	0	0	0	0.0093677	2	5423	5423;5656		128.57	103.17	1	29861000			13013	2164	9411	9485	12679;12680	12679		84			-0.11897487506621474
ETDRGMSAEY	10	Oxidation (M)	_ETDRGM(Oxidation (M))SAEY_		ETDRGM(1)SAEY		ETDRGM(130)SAEY	0	0	1		ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-MSMS	A375_MHC_IP_R2	2	588.1373291015625	2	587.737685	1173.46082	-0.89835	-0.00052799	0.35765	0.0002102	-0.5407	-0.00031779	587.7379636784125	20.683	1.4716	21.293	20.855	22.327	0.61029					75	28	4	0	0	0	0.011232	3	6613	6383;6613;6642		125.04	87.064	1	23617000			13014	2164	9411	9485	12681;12682;12683	12682		84			-0.11897487506621474
ETDRGMSAEY	10	Unmodified	_ETDRGMSAEY_					0	0	0		ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-MSMS	A375_MHC_IP_R1	1	580.1396484375	2	579.740228	1157.4659	-0.51038	-0.00029589	-0.3917	-0.00022708	-0.90208	-0.00052297	579.7400951630459	26.651	0.55386	26.651	26.474	27.027	0					31	10	4	0	0	0	0.017482	2	7972	7946;7972		87.258	50.752	1	23079000			13015	2164	9411	9486	12684;12685	12685					-0.10653183643989905
ETDRGMSAEY	10	Unmodified	_ETDRGMSAEY_					0	0	0		ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-SECPEP	A375_MHC_IP_R2	2	580.1392822265625	2	579.740228	1157.4659	-0.68291	-0.00039591	-0.2468	-0.00014308	-0.92971	-0.00053899	579.7401640351899	26.169	0.55912	26.829	26.602	27.161	0.65992					33	10	4	0	0	0	0.010364	1	8803	8803		132.13	110.6	1	30837000			13016	2164	9411	9486	12686	12686					-0.10653183643989905
ETDSAVHYYS	10	Unmodified	_ETDSAVHYYS_					0	0	0			REV__nc|ENSG00000182473|Q9UPT5-4|EXOC7	REV__nc|ENSG00000182473|Q9UPT5-4|EXOC7	MULTI-MSMS	A375_MHC_IP_R1	1	586.7110595703125	2	586.248743	1170.48293	-0.26673	-0.00015637	-0.26349	-0.00015447	-0.53022	-0.00031084	586.2487110858162	87.841	0.55973	87.841	87.441	88	0					15	10	2	0	0	0	0.6806	1	32180	32180		14.838	4.7643	1	3648600	+		13017	21692	9412	9487	12687	12687					-0.09548939766546027
ETDSAVHYYS	10	Unmodified	_ETDSAVHYYS_					0	0	0			REV__nc|ENSG00000182473|Q9UPT5-4|EXOC7	REV__nc|ENSG00000182473|Q9UPT5-4|EXOC7	MULTI-MSMS	A375_MHC_IP_R2	2	586.7107543945312	2	586.248743	1170.48293	-0.43414	-0.00025451	0.44251	0.00025942	0.0083717	4.9079E-06	586.2486498336999	87.237	0.50558	87.97	87.712	88.218	0.733					19	9	3	0	0	0	0.70496	1	33092	33092		10.074	5.7447	1	2970700	+		13018	21692	9412	9487	12688	12688					-0.09548939766546027
ETDSGAGLKW	10	Unmodified	_ETDSGAGLKW_					0	0	0		nc|ENSG00000160049|O00273-2|DFFA;ENSG00000160049|ENST00000377038|DFFA	nc|ENSG00000160049|O00273-2|DFFA	nc|ENSG00000160049|O00273-2|DFFA	MULTI-MSMS	A375_MHC_IP_R1	1	532.6557006835938	2	532.256371	1062.49819	-0.64156	-0.00034148	-0.10779	-5.7372E-05	-0.74935	-0.00039885	532.256288379037	50.587	0.45851	50.587	50.305	50.764	0					14	8	2	0	0	0	0.47255	2	17934	17934;17972		29.841	8.3718	1	2353700			13019	6392	9413	9488	12689;12690	12689					-0.030560281786847554
ETDSGAGLKW	10	Unmodified	_ETDSGAGLKW_					0	0	0		nc|ENSG00000160049|O00273-2|DFFA;ENSG00000160049|ENST00000377038|DFFA	nc|ENSG00000160049|O00273-2|DFFA	nc|ENSG00000160049|O00273-2|DFFA	MULTI-SECPEP	A375_MHC_IP_R2	2	532.03759765625	2	532.256371	1062.49819	-0.94961	-0.00050544	0.23362	0.00012434	-0.71599	-0.00038109	532.2565650474256	49.757	0.55994	50.511	50.294	50.854	0.75406					15	10	2	0	0	0	0.63381	1	18743	18743		31.268	18.226	1	2668800			13020	6392	9413	9488	12691	12691					-0.030560281786847554
ETDSIHIEY	9	Unmodified	_ETDSIHIEY_					0	0	0		ENST00000302754.5_1_19:12903662-12904103:+|nuORF	ENST00000302754.5_1_19:12903662-12904103:+|nuORF	ENST00000302754.5_1_19:12903662-12904103:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	554.1537475585938	2	553.753661	1105.49277	-0.45576	-0.00025238	0.68419	0.00037887	0.22843	0.00012649	553.7538730681994	56.681	0.66082	56.681	56.295	56.956	0					28	12	3	0	0	0	0.0086611	2	20319	20319;20392		128.37	61.022	1	4062600			13021	10551	9414	9489	12692;12693	12692					-0.055757517611937146
ETDSIHIEY	9	Unmodified	_ETDSIHIEY_					0	0	0		ENST00000302754.5_1_19:12903662-12904103:+|nuORF	ENST00000302754.5_1_19:12903662-12904103:+|nuORF	ENST00000302754.5_1_19:12903662-12904103:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	554.207763671875	2	553.753661	1105.49277	-0.99026	-0.00054836	0.10315	5.712E-05	-0.88711	-0.00049124	553.7536943778346	56.004	0.51121	56.755	56.54	57.051	0.75015					15	9	2	0	0	0	0.27715	1	21211	21211		32.305	10.559	1	4016200			13022	10551	9414	9489	12694	12694					-0.055757517611937146
ETDSQWSLL	9	Unmodified	_ETDSQWSLL_					0	0	0		ENST00000398958.6_1_1:28832559-28834659:+|nuORF	ENST00000398958.6_1_1:28832559-28834659:+|nuORF	ENST00000398958.6_1_1:28832559-28834659:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	538.6873779296875	2	539.756204	1077.49785	-0.53607	-0.00028935	-0.70645	-0.00038131	-1.2425	-0.00067066	539.7558526936389	71.06	0.6154	71.06	70.749	71.364	0					20	11	2	0	0	0	0.70307	1	25846	25846		6.7232	0.36906	1	2219500			13023	11532	9415	9490	12695	12695					-0.03779447898568833
ETDTDEDESY	10	Unmodified	_ETDTDEDESY_					0	0	0			REV__nc|ENSG00000111785|Q9NVN3|RIC8B	REV__nc|ENSG00000111785|Q9NVN3|RIC8B	MSMS	A375_MHC_IP_R1	1	602.2463989257812	2	602.21222	1202.40989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.593	1	83.593	83.093	84.093	0								0	0	0	0.1552	1	30591	30591		3.9444	0.3479	1		+		13024	17693	9416	9491	12696	12696					-0.18322158070486694
ETDTSCPAIYE	11	Unmodified	_ETDTSCPAIYE_					0	0	0			REV__nc|ENSG00000126838|P20742-2|PZP	REV__nc|ENSG00000126838|P20742-2|PZP	MSMS	A375_MHC_IP_R2	2	614.7093505859375	2	614.755543	1227.49653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.268	1	55.019	54.519	55.519	0.75075								0	0	0	0.15541	1	20481	20481		17.113	3.2068	1		+		13025	18400	9417	9492	12697	12697					-0.1081145004964128
ETDVLGEFQ	9	Unmodified	_ETDVLGEFQ_					0	0	0			REV__nc|ENSG805|P63124|HERV-K104_pro	REV__nc|ENSG805|P63124|HERV-K104_pro	MULTI-SECPEP	A375_MHC_IP_R2	2	1036.8575439453125	1	1037.47858	1036.47131	0.1769	0.00018353	0.067993	7.0541E-05	0.24489	0.00025407	1037.4785738820797	86.736	0.86588	87.469	87.1	87.966	0.733					45	16	4	0	0	0	0.73363	1	32860	32860		15.847	0	1	29419000	+		13026	27568	9418	9493	12698	12698					-0.045471367898926474
ETDVLGEFQ	9	Unmodified	_ETDVLGEFQ_					0	0	0			REV__nc|ENSG805|P63124|HERV-K104_pro	REV__nc|ENSG805|P63124|HERV-K104_pro	MULTI-MATCH	A375_MHC_IP_R1	1		1	1037.47858	1036.47131	0.097864	0.00010153	-0.37924	-0.00039345	-0.28137	-0.00029192	1037.4781390672958	87.415	0.91476	87.415	86.983	87.898	0	-0.027208	-0.00021791	NaN	15.847	49	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32523000	+		13027	27568	9418	9493							-0.045471367898926474
ETDVVVNYLRE	11	Unmodified	_ETDVVVNYLRE_					0	0	0			REV__nc|ENSG00000136824|O95347-2|SMC2	REV__nc|ENSG00000136824|O95347-2|SMC2	MULTI-SECPEP	A375_MHC_IP_R1	1	445.61553955078125	3	446.229625	1335.66705	-0.32988	-0.0001472	2.1181	0.00094515	1.7882	0.00079794	446.23048919870075	23.813	0.20252	23.813	23.687	23.889	0					5	3	2	0	0	0	0.99133	1	6638	6638		3.5927	1.1579	1	4494900	+		13028	18959	9419	9494	12699	12699					0.012638286641276864
ETEAVKRYNDY	11	Unmodified	_ETEAVKRYNDY_					0	0	0		nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	MULTI-MSMS	A375_MHC_IP_R2	2	694.7274169921875	2	694.328056	1386.64156	-1.0203	-0.0007084	0.32085	0.00022278	-0.69941	-0.00048562	694.3279364683037	20.985	0.35514	21.595	21.413	21.769	0.61089					11	6	2	0	0	0	0.26114	1	6624	6624		49.742	29.327	1	1220200			13029	1855	9420	9495	12700	12700					-0.036296458582683044
ETEDERLVY	9	Unmodified	_ETEDERLVY_					0	0	0		ENSG00000171617|ENST00000302351|ENC1;nc|ENSG00000171617|O14682-2|ENC1	ENSG00000171617|ENST00000302351|ENC1	ENSG00000171617|ENST00000302351|ENC1	MULTI-SECPEP	A375_MHC_IP_R1	1	577.1696166992188	2	577.272218	1152.52988	-0.23287	-0.00013443	4.3139	0.0024903	4.081	0.0023558	577.7773501573959	47.233	0.41173	47.233	47.055	47.467	0					19	7	4	0	0	0	0.62767	1	16611	16611		11.64	0	1	4513200			13030	7622	9421	9496	12701	12701					-0.04028080215425689
ETEDVFYTY	9	Unmodified	_ETEDVFYTY_					0	0	0		PTPN3|p.R539Ifs*3|1|0.28|ENSG00000070159|chr9:109408340-109408341|-/AA|frameshift_variant;nc|ENSG00000070159|P26045-3|PTPN3;nc|ENSG00000070159|P26045-2|PTPN3;ENSG00000070159|ENST00000374541|PTPN3	PTPN3|p.R539Ifs*3|1|0.28|ENSG00000070159|chr9:109408340-109408341|-/AA|frameshift_variant	PTPN3|p.R539Ifs*3|1|0.28|ENSG00000070159|chr9:109408340-109408341|-/AA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	584.1478881835938	2	583.748044	1165.48154	-0.37739	-0.0002203	-0.030224	-1.7643E-05	-0.40761	-0.00023794	583.7481287593964	90.161	0.55709	90.161	89.88	90.437	0					18	10	2	0	0	0	0.1478	1	33145	33145		42.095	22.838	1	2015000			13031	1488	9422	9497	12702	12702					-0.09458573855317809
ETEDVFYTY	9	Unmodified	_ETEDVFYTY_					0	0	0		PTPN3|p.R539Ifs*3|1|0.28|ENSG00000070159|chr9:109408340-109408341|-/AA|frameshift_variant;nc|ENSG00000070159|P26045-3|PTPN3;nc|ENSG00000070159|P26045-2|PTPN3;ENSG00000070159|ENST00000374541|PTPN3	PTPN3|p.R539Ifs*3|1|0.28|ENSG00000070159|chr9:109408340-109408341|-/AA|frameshift_variant	PTPN3|p.R539Ifs*3|1|0.28|ENSG00000070159|chr9:109408340-109408341|-/AA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	584.1475219726562	2	583.748044	1165.48154	-0.35444	-0.00020691	-0.63874	-0.00037286	-0.99318	-0.00057977	583.7482476141956	89.628	0.71575	90.36	90.035	90.751	0.7318					27	13	4	0	0	0	0.24479	1	34128	34128		34.102	16.99	1	1958600			13032	1488	9422	9497	12703	12703					-0.09458573855317809
ETEDVNLAY	9	Unmodified	_ETEDVNLAY_					0	0	0		ENSG00000153767|ENST00000283875|GTF2E1	ENSG00000153767|ENST00000283875|GTF2E1	ENSG00000153767|ENST00000283875|GTF2E1	MULTI-MSMS	A375_MHC_IP_R1	1	527.6403198242188	2	527.240386	1052.46622	-0.46862	-0.00024708	-0.23995	-0.00012651	-0.70857	-0.00037359	527.2401900458748	63.561	0.76608	63.561	63.121	63.887	0					30	14	3	0	0	0	0.026268	1	22944	22944		78.149	28.216	1	6707800			13033	6040	9423	9498	12704	12704					-0.05791440652524216
ETEDVNLAY	9	Unmodified	_ETEDVNLAY_					0	0	0		ENSG00000153767|ENST00000283875|GTF2E1	ENSG00000153767|ENST00000283875|GTF2E1	ENSG00000153767|ENST00000283875|GTF2E1	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6400146484375	2	527.240386	1052.46622	-0.44203	-0.00023306	-0.21876	-0.00011534	-0.66079	-0.0003484	527.2402350842023	62.946	0.70678	63.688	63.333	64.04	0.74263					32	13	3	0	0	0	0.11436	1	23826	23826		49.933	20.851	1	8066200			13034	6040	9423	9498	12705	12705					-0.05791440652524216
ETEEDKFLLLY	11	Unmodified	_ETEEDKFLLLY_					0	0	0		nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56;ENST00000446987.5_1_7:44605603-44612175:-|nuORF	nc|ENSG00000136271|Q9NY93-2|DDX56	nc|ENSG00000136271|Q9NY93-2|DDX56	MULTI-MSMS	A375_MHC_IP_R1	1	700.7537231445312	2	700.353208	1398.69186	-0.47953	-0.00033584	0.33236	0.00023277	-0.14716	-0.00010307	700.3535405673842	111.09	0.66584	111.09	110.8	111.46	0					34	12	4	0	0	0	0.00033917	1	40705	40705		150.62	124.35	1	11676000			13035	4776	9424	9499	12706	12706					0.008464637468705405
ETEEDKFLLLY	11	Unmodified	_ETEEDKFLLLY_					0	0	0		nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56;ENST00000446987.5_1_7:44605603-44612175:-|nuORF	nc|ENSG00000136271|Q9NY93-2|DDX56	nc|ENSG00000136271|Q9NY93-2|DDX56	MULTI-SECPEP	A375_MHC_IP_R2	2	699.9315795898438	2	700.353208	1398.69186	-0.54957	-0.00038489	0.38294	0.00026819	-0.16662	-0.0001167	700.8549505072968	110.37	0.66455	111.11	110.78	111.45	0.73692					33	12	3	0	0	0	0.08631	1	41592	41592		79.427	50.345	1	10133000			13036	4776	9424	9499	12707	12707					0.008464637468705405
ETEEECDLNY	10	Unmodified	_ETEEECDLNY_					0	0	0		tr|U7T567|U7T567_FUSNU3-oxoacyl-[acyl-carrier-protein]synthase2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00460PE=3SV=1	tr|U7T567|U7T567_FUSNU3-oxoacyl-[acyl-carrier-protein]synthase2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00460PE=3SV=1	tr|U7T567|U7T567_FUSNU3-oxoacyl-[acyl-carrier-protein]synthase2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00460PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	415.6081237792969	3	415.492297	1243.45506	0.42084	0.00017485	-2.3136	-0.00096129	-1.8928	-0.00078644	415.82511311287544	49.983	0.35936	49.983	49.793	50.153	0					10	6	2	0	0	0	0.94891	1	17704	17704		0.69767	0	1	1711800			13037	30013	9425	9500	12708	12708					-0.1569263080896235
ETEEGIYWRY	10	Unmodified	_ETEEGIYWRY_					0	0	0		nc|ENSG00000131650|Q8NCW0-6|KREMEN2;nc|ENSG00000131650|Q8NCW0-4|KREMEN2;nc|ENSG00000131650|Q8NCW0-3|KREMEN2;nc|ENSG00000131650|Q8NCW0-5|KREMEN2;nc|ENSG00000131650|Q8NCW0-2|KREMEN2;ENSG00000131650|ENST00000303746|KREMEN2	nc|ENSG00000131650|Q8NCW0-6|KREMEN2	nc|ENSG00000131650|Q8NCW0-6|KREMEN2	MULTI-MSMS	A375_MHC_IP_R1	1	673.7064208984375	2	673.306592	1344.59863	-0.64212	-0.00043234	-0.048711	-3.2797E-05	-0.69083	-0.00046514	673.3066359723829	73.687	0.55807	73.687	73.437	73.995	0					24	10	3	0	0	0	0.018806	1	26811	26811		86.332	56.491	1	5543700			13038	4339	9426	9501	12709	12709					-0.059884159157036265
ETEEGIYWRY	10	Unmodified	_ETEEGIYWRY_					0	0	0		nc|ENSG00000131650|Q8NCW0-6|KREMEN2;nc|ENSG00000131650|Q8NCW0-4|KREMEN2;nc|ENSG00000131650|Q8NCW0-3|KREMEN2;nc|ENSG00000131650|Q8NCW0-5|KREMEN2;nc|ENSG00000131650|Q8NCW0-2|KREMEN2;ENSG00000131650|ENST00000303746|KREMEN2	nc|ENSG00000131650|Q8NCW0-6|KREMEN2	nc|ENSG00000131650|Q8NCW0-6|KREMEN2	MULTI-SECPEP	A375_MHC_IP_R2	2	673.705810546875	2	673.306592	1344.59863	-0.72	-0.00048478	0.45936	0.00030929	-0.26065	-0.0001755	673.306878337743	73.034	0.56109	73.769	73.53	74.091	0.73541					24	10	3	0	0	0	0.019704	1	27710	27710		121.53	121.53	1	5626100			13039	4339	9426	9501	12710	12710					-0.059884159157036265
ETEELPLRF	9	Unmodified	_ETEELPLRF_					0	0	0			REV__ENSG00000185010|ENST00000360256|F8	REV__ENSG00000185010|ENST00000360256|F8	MSMS	A375_MHC_IP_R1	1	378.5859069824219	3	378.532756	1132.57644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.087	1	35.087	34.587	35.587	0								0	0	0	0.1493	1	11638	11638		22.736	10.496	1		+		13040	21858	9427	9502	12711	12711					0.015454044065336348
ETEELSREY	9	Unmodified	_ETEELSREY_					0	0	0		NUP107|p.P479S|1|0.88|ENSG00000111581|chr12:68721964-68721964|C/T|missense_variant	NUP107|p.P479S|1|0.88|ENSG00000111581|chr12:68721964-68721964|C/T|missense_variant	NUP107|p.P479S|1|0.88|ENSG00000111581|chr12:68721964-68721964|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	577.6536254882812	2	578.26185	1154.50915	-0.55806	-0.00032271	-0.69265	-0.00040053	-1.2507	-0.00072324	578.2613102327877	24.508	0.96371	25.152	24.755	25.719	0.64368					31	18	3	0	0	0	0.70886	1	8095	8095		6.2058	6.2058	1	9441500			13041	15037	9428	9503	12712	12712					-0.06192670595078198
ETEHRRINY	9	Unmodified	_ETEHRRINY_					0	0	0		ENST00000465851.1_1_2:196578167-196578251:+|nuORF	ENST00000465851.1_1_2:196578167-196578251:+|nuORF	ENST00000465851.1_1_2:196578167-196578251:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	406.5910339355469	3	406.538904	1216.59488	-0.26302	-0.00010693	3.8692	0.001573	3.6061	0.001466	406.8754798205597	19.173	0.4522	19.776	19.533	19.986	0.60308					11	8	2	0	0	0	0.78753	1	5769	5769		8.1555	0	1	2183800			13042	12250	9429	9504	12713	12713					-0.0047504089889116585
ETEIKDGYFY	10	Unmodified	_ETEIKDGYFY_					0	0	0		tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1	tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1	tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	632.1795043945312	2	632.790244	1263.56593	-1.2431	-0.00078665	2.0143	0.0012746	0.77111	0.00048795	632.7915131709972	56.852	0.4585	57.602	57.356	57.815	0.75015					13	8	2	0	0	0	0.91556	1	21402	21402		10.074	0	1	1987600			13043	29968	9430	9505	12714	12714					-0.05530623038566773
ETEIKDGYFY	10	Unmodified	_ETEIKDGYFY_					0	0	0		tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1	tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1	tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	632.790244	1263.56593	-0.63898	-0.00040434	2.0791	0.0013156	1.4401	0.00091129	632.7915379756545	57.524	0.45737	57.524	57.313	57.771	0	-0.039366	2.1214E-05	NaN	13.042	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1181500			13044	29968	9430	9505							-0.05530623038566773
ETEIKNRIL	9	Unmodified	_ETEIKNRIL_					0	0	0			REV__tr|U7T352|U7T352_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00398PE=4SV=1	REV__tr|U7T352|U7T352_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00398PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	372.9521484375	3	372.552151	1114.63462	0.43035	0.00016033	-0.26349	-9.8163E-05	0.16686	6.2164E-05	372.5520111830271	32.147	0.45794	32.884	32.704	33.162	0.73691					21	8	4	0	0	0	0.55534	1	11420	11420		26.021	0	1	12095000	+		13045	28764	9431	9506	12715	12715					0.081890860518115
ETEKDFSRY	9	Unmodified	_ETEKDFSRY_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	A375_MHC_IP_R1	1	588.1722412109375	2	587.772385	1173.53022	-0.50564	-0.0002972	0.20753	0.00012198	-0.29811	-0.00017522	587.7724560907977	24.017	0.80977	24.017	23.787	24.597	0					40	15	3	0	0	0	0.00075692	1	6716	6716		197.81	116.19	1	127780000			13046	1066	9432	9507	12716	12716					-0.049606604955670264
ETEKDFSRY	9	Unmodified	_ETEKDFSRY_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-SECPEP	A375_MHC_IP_R1	1	391.9667053222656	3	392.184016	1173.53022	-0.10304	-4.0411E-05	0.66066	0.0002591	0.55762	0.00021869	392.1840752518189	24.017	0.91018	24.017	23.737	24.647	0					65	17	5	0	0	0	0.03109	1	6696	6696		84.522	39.578	1	324730000			13047	1066	9432	9507	12717	12717					-0.049606604955670264
ETEKDFSRY	9	Unmodified	_ETEKDFSRY_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	A375_MHC_IP_R2	2	588.172119140625	2	587.772385	1173.53022	-0.8194	-0.00048162	0.83526	0.00049094	0.015862	9.3234E-06	587.7732999713342	23.933	0.6109	24.563	24.283	24.893	0.63014					27	11	4	0	0	0	0.0020209	1	7783	7783		143.91	91.641	1	21419000			13048	1066	9432	9507	12718	12718					-0.049606604955670264
ETEKDFSRY	9	Unmodified	_ETEKDFSRY_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-SECPEP	A375_MHC_IP_R2	2	392.96575927734375	3	392.184016	1173.53022	-0.43964	-0.00017242	0.39088	0.0001533	-0.048768	-1.9126E-05	392.1841610550732	23.931	0.51065	24.561	24.18	24.691	0.63014					29	9	4	0	0	0	0.070665	1	7652	7652		55.235	38.96	1	50778000			13049	1066	9432	9507	12719	12719					-0.049606604955670264
ETEKDFSRY	9	Unmodified	_ETEKDFSRY_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-SECPEP	A375_MHC_IP_R2	2	392.9595031738281	3	392.184016	1173.53022	-0.4903	-0.00019229	0.98727	0.00038719	0.49697	0.0001949	392.1841478604611	23.399	0.45495	24.029	23.828	24.283	0.63014					33	8	5	0	0	0	0.0575	1	7546	7546		62.869	41.997	1	178510000			13050	1066	9432	9507	12720	12720					-0.049606604955670264
ETEKDFSRY	9	Unmodified	_ETEKDFSRY_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-SECPEP	A375_MHC_IP_R2	2	588.171875	2	587.772385	1173.53022	-0.87018	-0.00051147	0.42509	0.00024986	-0.44509	-0.00026161	587.7725571277131	23.409	0.45495	24.039	23.828	24.283	0.63014					26	8	4	0	0	0	0.0073895	1	7508	7508		171.46	100.33	1	67250000			13051	1066	9432	9507	12721	12721					-0.049606604955670264
ETEKMIEKY	9	Oxidation (M)	_ETEKM(Oxidation (M))IEKY_		ETEKM(1)IEKY		ETEKM(46)IEKY	0	0	1		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	A375_MHC_IP_R1	1	396.927734375	3	396.193523	1185.55874	0.13525	5.3587E-05	-0.16626	-6.5872E-05	-0.031009	-1.2285E-05	396.19347837309573	21.036	3.506	21.036	20.485	23.991	0					182	68	5	0	0	0	0.12591	2	5404	5404;5634		46.022	26.396	1	64329000			13052	3298	9433	9508	12722;12723	12722		160			-0.02661678910635601
ETEKMIEKY	9	Oxidation (M)	_ETEKM(Oxidation (M))IEKY_		ETEKM(1)IEKY		ETEKM(140)IEKY	0	0	1		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R1	1	594.1860961914062	2	593.786647	1185.55874	-0.14871	-8.83E-05	-0.16838	-9.9983E-05	-0.31709	-0.00018828	593.7865424879162	21.008	2.5368	21.008	20.69	23.227	0					113	49	4	0	0	0	0.011151	1	5420	5420		139.38	58.702	1	25677000			13053	3298	9433	9508	12724	12724		160			-0.02661678910635601
ETEKMIEKY	9	Oxidation (M)	_ETEKM(Oxidation (M))IEKY_		ETEKM(1)IEKY		ETEKM(140)IEKY	0	0	1		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R1	1	594.1867065429688	2	593.786647	1185.55874	-0.5578	-0.00033121	0.37001	0.00021971	-0.18778	-0.0001115	593.7868759619807	19.293	0.53787	19.293	19.238	19.776	0					17	10	3	0	0	0	0.011151	1	4730	4730		139.38	59.782	1	135060000			13054	3298	9433	9508	12725	12725		160			-0.02661678910635601
ETEKMIEKY	9	Oxidation (M)	_ETEKM(Oxidation (M))IEKY_		ETEKM(1)IEKY		ETEKM(94)IEKY	0	0	1		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	A375_MHC_IP_R2	2	594.6875610351562	2	593.786647	1185.55874	-0.89743	-0.00053288	0.30897	0.00018346	-0.58845	-0.00034941	593.7868415016956	20.679	2.2885	21.289	20.907	23.195	0.61029					101	44	4	0	0	0	0.01185	1	6388	6388		93.938	40.105	1	16244000			13055	3298	9433	9508	12726	12726		160			-0.02661678910635601
ETEKMIEKY	9	Oxidation (M)	_ETEKM(Oxidation (M))IEKY_		ETEKM(1)IEKY		ETEKM(44)IEKY	0	0	1		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R2	2	594.1859741210938	2	593.786647	1185.55874	-0.82949	-0.00049254	0.18544	0.00011011	-0.64404	-0.00038242	593.7865596107933	18.855	0.20984	19.458	19.423	19.633	0.60308					10	5	3	0	0	0	0.27742	1	5653	5653		43.772	21.036	1	65791000			13056	3298	9433	9508	12727	12727		160			-0.02661678910635601
ETEKMIEKY	9	Unmodified	_ETEKMIEKY_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R1	1	391.26177978515625	3	390.861885	1169.56383	0.17684	6.9118E-05	-0.3128	-0.00012226	-0.13597	-5.3144E-05	390.8618047680051	25.179	0.91299	25.179	24.903	25.816	0					56	17	5	0	0	0	0.01147	1	7275	7275		92.201	23.441	1	293030000			13057	3298	9433	9509	12728	12728					-0.014173750480040326
ETEKMIEKY	9	Unmodified	_ETEKMIEKY_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R1	1	586.1887817382812	2	585.789189	1169.56383	-0.23644	-0.00013851	-0.34793	-0.00020381	-0.58437	-0.00034232	585.7890904061973	25.179	0.91342	25.179	24.953	25.866	0					52	17	5	0	0	0	0.011308	1	7276	7276		128.93	50.204	1	233500000			13058	3298	9433	9509	12729	12729					-0.014173750480040326
ETEKMIEKY	9	Unmodified	_ETEKMIEKY_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R2	2	391.26171875	3	390.861885	1169.56383	-0.54651	-0.00021361	0.25524	9.9765E-05	-0.29126	-0.00011384	390.86204501925727	24.594	1.2706	25.237	25.009	26.28	0.64368					78	24	6	0	0	0	0.061442	1	8078	8078		67.081	17.339	1	250800000			13059	3298	9433	9509	12730	12730					-0.014173750480040326
ETEKMIEKY	9	Unmodified	_ETEKMIEKY_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R2	2	586.188720703125	2	585.789189	1169.56383	-0.88929	-0.00052094	-0.10131	-5.9344E-05	-0.9906	-0.00058028	585.7892450481806	24.594	1.0686	25.237	25.009	26.078	0.64368					57	20	5	0	0	0	0.011031	1	8080	8080		140.63	61.905	1	172590000			13060	3298	9433	9509	12731	12731					-0.014173750480040326
ETEKRIQEHTV	11	Unmodified	_ETEKRIQEHTV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R1	1	456.6236572265625	3	457.240524	1368.69974	-0.27906	-0.0001276	-0.031419	-1.4366E-05	-0.31048	-0.00014196	457.24036503523143	25.467	0.50917	25.467	25.154	25.664	0					12	9	2	0	0	0	0.99681	1	7347	7347		7.0371	3.9648	1	2532900	+		13061	19932;27303	9434	9510	12732	12732					0.03014035786986824
ETELFKRGIGE	11	Unmodified	_ETELFKRGIGE_					0	0	0		tr|U7SXD8|U7SXD8_FUSNUHistidine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hisSPE=3SV=1	tr|U7SXD8|U7SXD8_FUSNUHistidine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hisSPE=3SV=1	tr|U7SXD8|U7SXD8_FUSNUHistidine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hisSPE=3SV=1	MSMS	A375_MHC_IP_R1	1	426.9383850097656	3	426.894465	1277.66157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.492	1	19.492	18.992	19.992	0								0	0	0	0.16179	1	4851	4851		4.7159	0	1				13062	29826	9435	9511	12733	12733					0.03384149872317721
ETELNKFEY	9	Unmodified	_ETELNKFEY_					0	0	0		tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	587.182373046875	2	586.777136	1171.53972	-0.3084	-0.00018096	0.94354	0.00055365	0.63514	0.00037269	586.7776970167429	64.47	0.96412	64.47	63.887	64.851	0					55	18	4	0	0	0	0.091096	1	23214	23214		52.268	2.7141	1	17594000			13063	29622	9436	9512	12734	12734					-0.0391889221002657
ETEMESEEH	9	Unmodified	_ETEMESEEH_					0	0	0			REV__ENST00000490846.5_1_1:70758067-70779428:-|nuORF	REV__ENST00000490846.5_1_1:70758067-70779428:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1120.481201171875	1	1120.40991	1119.40263	0.27295	0.00030582	1.7274	0.0019354	2.0004	0.0022412	1121.4133155634129	116.58	0.61019	117.24	117.07	117.68	0.65962					17	10	2	0	0	0	0.80005	1	44228	44228		0.52476	0	1	32293000	+		13064	18039	9437	9513	12735	12735					-0.15229169151916722
ETEMFDRLQ	9	Unmodified	_ETEMFDRLQ_					0	0	0			REV__PPFIA2|p.G851D|1|0.33|ENSG00000139220|chr12:81325867-81325867|C/T|missense_variant	REV__PPFIA2|p.G851D|1|0.33|ENSG00000139220|chr12:81325867-81325867|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	584.0111083984375	2	584.768788	1167.52302	-0.61961	-0.00036233	-0.72852	-0.00042601	-1.3481	-0.00078834	584.7683417475274	50.475	0.60916	51.229	50.955	51.564	0.75406					17	11	2	0	0	0	0.71541	1	19037	19037		3.9444	0	1	1522900	+		13065	27828	9438	9514	12736	12736					-0.05403716367641209
ETEMNEQKIN	10	Unmodified	_ETEMNEQKIN_					0	0	0			REV__ENSG00000155980|ENST00000455537|KIF5A	REV__ENSG00000155980|ENST00000455537|KIF5A	MSMS	A375_MHC_IP_R2	2	412.61895751953125	3	412.523932	1234.54997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.697	1	40.471	39.971	40.971	0.77451								0	0	0	0.15308	1	14669	14669		6.1918	0.89496	1		+		13066	19956	9439	9515	12737	12737					-0.05792652547097532
ETENMCESEY	10	Unmodified	_ETENMCESEY_					0	0	0			REV__ENSG00000156136|ENST00000286648|DCK	REV__ENSG00000156136|ENST00000286648|DCK	MSMS	A375_MHC_IP_R1	1	617.7223510742188	2	617.715561	1233.41657	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.295	1	69.295	68.795	69.795	0								0	0	0	0.1552	1	25144	25144		3.9444	0.3479	1		+		13067	19963	9440	9516	12738	12738					-0.19080259715133252
ETEQAIHNY	9	Unmodified	_ETEQAIHNY_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-MSMS	A375_MHC_IP_R1	1	553.1511840820312	2	552.751453	1103.48835	-0.67372	-0.0003724	0.10563	5.8389E-05	-0.56808	-0.00031401	552.7514629725922	24.539	0.25031	24.539	24.397	24.647	0					6	4	2	0	0	0	0.05754	1	7025	7025		61.357	34.474	1	3924100			13068	2487	9441	9517	12739	12739					-0.05925216184095916
ETEQAIHNY	9	Unmodified	_ETEQAIHNY_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-SECPEP	A375_MHC_IP_R2	2	553.1514282226562	2	552.751453	1103.48835	-1.0281	-0.00056828	0.26708	0.00014763	-0.76102	-0.00042065	552.7515427023965	24.017	0.50974	24.656	24.443	24.953	0.63887					11	9	2	0	0	0	0.63327	1	7872	7872		24.021	24.021	1	2496300			13069	2487	9441	9517	12740	12740					-0.05925216184095916
ETEQPTLDY	9	Unmodified	_ETEQPTLDY_					0	0	0		ENSG00000106624|ENST00000223357|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	MULTI-MSMS	A375_MHC_IP_R1	1	548.645263671875	2	548.245669	1094.47678	-0.51891	-0.00028449	1.7244	0.00094542	1.2055	0.00066093	548.2460557561475	57.43	0.66194	57.43	57.109	57.771	0					23	12	3	0	0	0	0.22013	1	20638	20638		36.506	7.4246	1	2798400			13070	2703	9442	9518	12741	12741					-0.06667457998082682
ETEQPTLDY	9	Unmodified	_ETEQPTLDY_					0	0	0		ENSG00000106624|ENST00000223357|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6452026367188	2	548.245669	1094.47678	-1.2238	-0.00067092	0.71725	0.00039323	-0.50651	-0.00027769	548.2459195305203	56.785	0.61205	57.535	57.306	57.918	0.75015					17	11	2	0	0	0	0.54812	1	21502	21502		31.268	15.421	1	1955500			13071	2703	9442	9518	12742	12742					-0.06667457998082682
ETEQTKFWDY	10	Unmodified	_ETEQTKFWDY_					0	0	0		ENSG00000196968|ENST00000372841|FUT11	ENSG00000196968|ENST00000372841|FUT11	ENSG00000196968|ENST00000372841|FUT11	MULTI-MSMS	A375_MHC_IP_R1	1	674.1983032226562	2	673.7986	1345.58265	-0.27746	-0.00018695	-0.024909	-1.6784E-05	-0.30237	-0.00020374	673.7985682553535	69.865	0.70998	69.865	69.631	70.341	0					32	13	4	0	0	0	2.711E-05	1	25340	25340		158.08	131.81	1	7232200			13072	9096	9443	9519	12743	12743					-0.07632122152608645
ETEQTKFWDY	10	Unmodified	_ETEQTKFWDY_					0	0	0		ENSG00000196968|ENST00000372841|FUT11	ENSG00000196968|ENST00000372841|FUT11	ENSG00000196968|ENST00000372841|FUT11	MULTI-MSMS	A375_MHC_IP_R2	2	674.1975708007812	2	673.7986	1345.58265	-0.61875	-0.00041691	-0.15285	-0.00010299	-0.7716	-0.0005199	673.7984256290066	69.322	0.7103	70.056	69.676	70.386	0.73421					28	13	3	0	0	0	0.0014869	1	26240	26240		143.21	105.04	1	6509300			13073	9096	9443	9519	12744	12744					-0.07632122152608645
ETEREYFNRY	10	Unmodified	_ETEREYFNRY_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;RBBP6|p.E1056Nfs*55|1|0.28|ENSG00000122257|chr16:24569855-24569855|T/-|frameshift_variant	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MULTI-MSMS	A375_MHC_IP_R1	1	704.2198486328125	2	703.820398	1405.62624	-0.85068	-0.00059873	0.12328	8.6765E-05	-0.7274	-0.00051196	703.8204339384248	32.63	0.50359	32.63	32.383	32.887	0					31	9	4	0	0	0	0.0045604	1	10534	10534		135.86	99.357	1	16768000			13074	3771	9444	9520	12745	12745					-0.06034512655469371
ETEREYFNRY	10	Unmodified	_ETEREYFNRY_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;RBBP6|p.E1056Nfs*55|1|0.28|ENSG00000122257|chr16:24569855-24569855|T/-|frameshift_variant	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MULTI-SECPEP	A375_MHC_IP_R1	1	470.2834167480469	3	469.549357	1405.62624	-0.59297	-0.00027843	0.082146	3.8572E-05	-0.51082	-0.00023986	469.5493940446723	32.61	0.80654	32.61	32.333	33.14	0					55	15	6	0	0	0	0.08679	1	10513	10513		76.416	62.245	1	93173000			13075	3771	9444	9520	12746	12746					-0.06034512655469371
ETEREYFNRY	10	Unmodified	_ETEREYFNRY_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;RBBP6|p.E1056Nfs*55|1|0.28|ENSG00000122257|chr16:24569855-24569855|T/-|frameshift_variant	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MULTI-MSMS	A375_MHC_IP_R2	2	469.9491271972656	3	469.549357	1405.62624	-0.61682	-0.00028963	0.23573	0.00011069	-0.38109	-0.00017894	469.5494717251417	31.974	0.81226	32.711	32.401	33.213	0.73692					49	15	5	0	0	0	0.011381	1	11290	11290		97.284	82.446	1	97572000			13076	3771	9444	9520	12747	12747					-0.06034512655469371
ETEREYFNRY	10	Unmodified	_ETEREYFNRY_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;RBBP6|p.E1056Nfs*55|1|0.28|ENSG00000122257|chr16:24569855-24569855|T/-|frameshift_variant	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MULTI-MSMS	A375_MHC_IP_R2	2	704.2200927734375	2	703.820398	1405.62624	-0.72947	-0.00051342	0.084823	5.97E-05	-0.64465	-0.00045372	703.8204744807413	31.973	0.45578	32.71	32.504	32.96	0.73691					26	8	4	0	0	0	2.0644E-05	1	11310	11310		187.14	143.37	1	18306000			13077	3771	9444	9520	12748	12748					-0.06034512655469371
ETEREYFNRY	10	Unmodified	_ETEREYFNRY_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;RBBP6|p.E1056Nfs*55|1|0.28|ENSG00000122257|chr16:24569855-24569855|T/-|frameshift_variant	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MULTI-SECPEP	A375_MHC_IP_R2	2	468.9720764160156	3	469.549357	1405.62624	-0.65672	-0.00030836	0.22346	0.00010493	-0.43326	-0.00020343	469.88398759275594	32.605	0.25519	33.342	33.162	33.417	0.73692					6	4	2	0	0	0	0.93578	1	11599	11599		8.9762	5.3892	1	1359400			13078	3771	9444	9520	12749	12749					-0.06034512655469371
ETERFRELLLY	11	Unmodified	_ETERFRELLLY_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MULTI-MSMS	A375_MHC_IP_R1	1	490.66448974609375	3	490.264669	1467.77218	-0.5028	-0.00024651	0.14349	7.0346E-05	-0.35931	-0.00017616	490.2646864608547	84.862	0.5116	84.862	84.494	85.005	0					13	9	2	0	0	0	0.59166	1	31097	31097		23.964	14.2	1	2683200			13079	14669	9445	9521	12750	12750					0.057003698605967656
ETERFRELLLY	11	Unmodified	_ETERFRELLLY_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MULTI-MSMS	A375_MHC_IP_R2	2	490.998779296875	3	490.264669	1467.77218	-0.47524	-0.00023299	0.039182	1.921E-05	-0.43606	-0.00021379	490.26475149610616	84.001	0.4621	84.741	84.458	84.92	0.73962					21	8	3	0	0	0	0.52344	1	31909	31909		29.281	11.418	1	2858500			13080	14669	9445	9521	12751	12751					0.057003698605967656
ETERIGAIV	9	Unmodified	_ETERIGAIV_					0	0	0			REV__ENSG00000184374|ENST00000332843|COLEC10	REV__ENSG00000184374|ENST00000332843|COLEC10	MULTI-MSMS	A375_MHC_IP_R2	2	494.6891784667969	2	494.277106	986.53966	-0.38175	-0.00018869	1.361	0.00067272	0.97928	0.00048404	494.27823706861875	68.703	0.2524	69.438	69.323	69.575	0.73511					5	4	2	0	0	0	0.12592	1	26077	26077		46.021	3.9264	1	447260	+		13081	21813	9446	9522	12752	12752					0.04585152580625618
ETERIVTTY	9	Unmodified	_ETERIVTTY_					0	0	0		nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;DNM2|p.R465W|1|0.28|ENSG00000079805|chr19:10798543-10798543|C/T|missense_variant;ENST00000587329.1_1_19:10909095-10913035:+|nuORF	nc|ENSG00000079805|P50570-3|DNM2	nc|ENSG00000079805|P50570-3|DNM2	MULTI-SECPEP	A375_MHC_IP_R2	2	555.7061767578125	2	556.285128	1110.5557	-1.027	-0.00057129	0.36293	0.00020189	-0.66405	-0.0003694	556.2852927094335	37.633	0.5631	38.407	38.124	38.687	0.77451					33	10	4	0	0	0	0.03341	1	13747	13747		103.42	63.47	1	48665000			13082	1703	9447	9523	12753	12753					0.0048481402686775255
ETERKLLTSRW	11	Unmodified	_ETERKLLTSRW_					0	0	0			REV__ENST00000471347.5_1_1:15654853-15671627:+|nuORF	REV__ENST00000471347.5_1_1:15654853-15671627:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	473.29925537109375	3	473.596531	1417.76776	-0.19071	-9.0318E-05	-0.075175	-3.5603E-05	-0.26588	-0.00012592	473.59643302798855	21.611	0.25251	21.611	21.454	21.706	0					6	4	2	0	0	0	0.99916	1	5646	5646		4.4062	2.4998	1	601730	+		13083	25117	9448	9524	12754	12754					0.07558905437667818
ETERLTDDY	9	Unmodified	_ETERLTDDY_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	A375_MHC_IP_R1	1	571.6535034179688	2	571.254025	1140.4935	-0.52421	-0.00029946	0.028081	1.6042E-05	-0.49613	-0.00028341	571.2541513585863	32.675	0.65596	32.675	32.434	33.09	0					29	10	4	0	0	0	0.010044	2	10550	10550;10579		125.04	77.289	1	18511000			13084	903	9449	9525	12755;12756	12755					-0.07112957112144613
ETERLTDDY	9	Unmodified	_ETERLTDDY_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	A375_MHC_IP_R2	2	571.6538696289062	2	571.254025	1140.4935	-0.2994	-0.00017103	0.092958	5.3102E-05	-0.20644	-0.00011793	571.2541030968274	32.057	0.71068	32.794	32.401	33.112	0.73692					28	12	3	0	0	0	0.0020209	5	11348	11299;11322;11348;11416;11440		143.91	80.215	1	22554000			13085	903	9449	9525	12757;12758;12759;12760;12761	12759					-0.07112957112144613
ETERRMDFY	9	Unmodified	_ETERRMDFY_					0	0	0		nc|ENSG00000180354|Q8N3F0-4|MTURN;nc|ENSG00000180354|Q8N3F0-2|MTURN;ENSG00000180354|ENST00000324453|MTURN	nc|ENSG00000180354|Q8N3F0-4|MTURN	nc|ENSG00000180354|Q8N3F0-4|MTURN	MULTI-MSMS	A375_MHC_IP_R1	1	416.5888671875	3	416.188884	1245.54482	0.31779	0.00013226	-0.11553	-4.8081E-05	0.20226	8.4178E-05	416.1887156385526	34.934	0.56089	34.934	34.708	35.269	0					23	10	3	0	0	0	0.2487	1	11595	11595		26.021	14.503	1	7601500			13086	8291	9450	9526	12762	12762					-0.06812911619067563
ETERRMDFY	9	Unmodified	_ETERRMDFY_					0	0	0		nc|ENSG00000180354|Q8N3F0-4|MTURN;nc|ENSG00000180354|Q8N3F0-2|MTURN;ENSG00000180354|ENST00000324453|MTURN	nc|ENSG00000180354|Q8N3F0-4|MTURN	nc|ENSG00000180354|Q8N3F0-4|MTURN	MULTI-SECPEP	A375_MHC_IP_R2	2	416.5885925292969	3	416.188884	1245.54482	-0.36975	-0.00015389	-0.325	-0.00013526	-0.69475	-0.00028915	416.18881975275775	34.169	0.71301	34.921	34.651	35.364	0.75225					33	13	4	0	0	0	0.4465	1	12285	12285		29.437	19.287	1	16412000			13087	8291	9450	9526	12763	12763					-0.06812911619067563
ETERRMDFY	9	Unmodified	_ETERRMDFY_					0	0	0		nc|ENSG00000180354|Q8N3F0-4|MTURN;nc|ENSG00000180354|Q8N3F0-2|MTURN;ENSG00000180354|ENST00000324453|MTURN	nc|ENSG00000180354|Q8N3F0-4|MTURN	nc|ENSG00000180354|Q8N3F0-4|MTURN	MULTI-SECPEP	A375_MHC_IP_R2	2	624.1790161132812	2	623.779687	1245.54482	-1.0964	-0.00068394	-0.079176	-4.9389E-05	-1.1756	-0.00073333	623.7796709339949	34.177	0.55912	34.929	34.702	35.262	0.75225					15	10	2	0	0	0	0.14572	1	12332	12332		62.573	34.086	1	6842000			13088	8291	9450	9526	12764	12764					-0.06812911619067563
ETESVRYVY	9	Unmodified	_ETESVRYVY_					0	0	0		ENSG00000095139|ENST00000264028|ARCN1;ARCN1|p.G229Efs*7|1|0.26|ENSG00000095139|chr11:118584509-118584509|T/-|frameshift_variant	ENSG00000095139|ENST00000264028|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	MULTI-SECPEP	A375_MHC_IP_R2	2	573.9971313476562	2	573.277303	1144.54005	-0.49899	-0.00028606	0.97252	0.00055753	0.47354	0.00027147	573.2779378812179	41.145	0.35562	41.92	41.743	42.098	0.77451					12	6	2	0	0	0	0.39273	1	15232	15232		39.95	9.3132	1	2401600			13089	2036	9451	9527	12765	12765					-0.026434724901719164
ETETELVNL	9	Unmodified	_ETETELVNL_					0	0	0			REV__nc|ENSG00000131725|Q5JSH3-4|WDR44	REV__nc|ENSG00000131725|Q5JSH3-4|WDR44	MULTI-SECPEP	A375_MHC_IP_R1	1	523.6671752929688	2	524.263862	1046.51317	-0.27307	-0.00014316	0.63424	0.00033251	0.36117	0.00018935	524.2642562470293	35.651	0.51044	35.651	35.472	35.982	0					16	9	2	0	0	0	0.75466	1	11864	11864		7.9102	0	1	3158300	+		13090	18618	9452	9528	12766	12766					-0.00822581101351716
ETETKPRTK	9	Unmodified	_ETETKPRTK_					0	0	0		ENST00000381077.9_1_X:6968071-6968173:-|nuORF	ENST00000381077.9_1_X:6968071-6968173:-|nuORF	ENST00000381077.9_1_X:6968071-6968173:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	363.6083068847656	3	363.868139	1088.58259	-0.33954	-0.00012355	-2.1142	-0.00076928	-2.4537	-0.00089283	363.8673800361024	19.373	0.2547	19.976	19.884	20.139	0.60308					7	4	2	0	0	0	0.74169	1	5948	5948		16.149	0	1	644770			13091	11367	9453	9529	12767	12767					0.04183922638026161
ETETLIVRI	9	Unmodified	_ETETLIVRI_					0	0	0		nc|ENSG00000134207|Q5T7P8-2|SYT6;ENSG00000134207|ENST00000610222|SYT6	nc|ENSG00000134207|Q5T7P8-2|SYT6	nc|ENSG00000134207|Q5T7P8-2|SYT6	MULTI-SECPEP	A375_MHC_IP_R2	2	358.95013427734375	3	358.544885	1072.61282	-0.22764	-8.1618E-05	-0.22038	-7.9018E-05	-0.44802	-0.00016064	358.5448159302407	31.567	0.40929	32.296	32.087	32.496	0.72913					10	7	2	0	0	0	0.74875	1	11182	11182		4.1895	0	1	2210200			13092	4556	9454	9530	12768	12768					0.07942281303257914
ETEYSFLDY	9	Unmodified	_ETEYSFLDY_					0	0	0		ENSG00000214078|ENST00000397443|CPNE1;ENST00000483495.5_1_20:34218821-34220289:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-MSMS	A375_MHC_IP_R1	1	584.1480102539062	2	583.748044	1165.48154	-0.11009	-6.4266E-05	0.17562	0.00010252	0.065527	3.8251E-05	583.7480804844088	111.08	0.97105	111.08	110.7	111.67	0					51	18	4	0	0	0	0.0095277	1	40652	40652		108	75.692	1	24885000			13093	9604	9455	9531	12769	12769					-0.09458573855317809
ETEYSFLDY	9	Unmodified	_ETEYSFLDY_					0	0	0		ENSG00000214078|ENST00000397443|CPNE1;ENST00000483495.5_1_20:34218821-34220289:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-MSMS	A375_MHC_IP_R1	1	1166.1947021484375	1	1166.48881	1165.48154	0.14074	0.00016417	0.64407	0.0007513	0.7848	0.00091546	1166.4895073682533	111.09	0.81906	111.09	110.7	111.52	0					35	15	3	0	0	0	0.003087	1	40712	40712		158.2	97.813	1	20269000			13094	9604	9455	9531	12770	12770					-0.09458573855317809
ETEYSFLDY	9	Unmodified	_ETEYSFLDY_					0	0	0		ENSG00000214078|ENST00000397443|CPNE1;ENST00000483495.5_1_20:34218821-34220289:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-MSMS	A375_MHC_IP_R2	2	584.1482543945312	2	583.748044	1165.48154	-0.27681	-0.00016159	0.30512	0.00017811	0.028304	1.6523E-05	583.7481363453483	110.42	0.91656	111.16	110.78	111.7	0.73692					50	17	4	0	0	0	0.0099443	3	41588	41586;41588;41793		120.45	80.493	1	23443000			13095	9604	9455	9531	12771;12772;12773	12772					-0.09458573855317809
ETEYSFLDY	9	Unmodified	_ETEYSFLDY_					0	0	0		ENSG00000214078|ENST00000397443|CPNE1;ENST00000483495.5_1_20:34218821-34220289:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-SECPEP	A375_MHC_IP_R2	2	1166.197509765625	1	1166.48881	1165.48154	0.32035	0.00037369	0.34432	0.00040164	0.66467	0.00077533	1166.4892309873064	110.42	0.71445	111.16	110.78	111.5	0.73692					39	13	4	0	0	0	0.0043351	1	41640	41640		158.2	97.813	1	14647000			13096	9604	9455	9531	12774	12774					-0.09458573855317809
ETFDEVSS	8	Unmodified	_ETFDEVSS_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-SECPEP	A375_MHC_IP_R2	2	913.5076293945312	1	913.378534	912.371257	-0.22174	-0.00020253	1.5007	0.0013707	1.2789	0.0011682	913.3808283888835	117.35	1.1669	118.01	117.07	118.24	0.65961					36	22	2	0	0	0	0.972	1	44032	44032		12.532	7.7755	1	19243000	+		13097	17258	9456	9532	12775	12775					-0.08843374123694048
ETFDYLHRNP	10	Unmodified	_ETFDYLHRNP_					0	0	0			REV__ATP8A2|p.G252E|1|0.1|ENSG00000132932|chr13:25542022-25542022|G/A|missense_variant	REV__ATP8A2|p.G252E|1|0.1|ENSG00000132932|chr13:25542022-25542022|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	646.7047119140625	2	646.306926	1290.5993	-1.1205	-0.00072418	-3.1646	-0.0020453	-4.2851	-0.0027695	646.3046273334036	34.05	0.30383	34.802	34.55	34.853	0.75225					7	5	2	0	0	0	0.57505	1	12253	12253		22.736	2.3217	1	5282900	+		13098	15482	9457	9533	12776	12776					-0.03437576476017057
ETFDYLHRNP	10	Unmodified	_ETFDYLHRNP_					0	0	0			REV__ATP8A2|p.G252E|1|0.1|ENSG00000132932|chr13:25542022-25542022|G/A|missense_variant	REV__ATP8A2|p.G252E|1|0.1|ENSG00000132932|chr13:25542022-25542022|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	646.306926	1290.5993	-0.4136	-0.00026731	-1.0494	-0.00067821	-1.463	-0.00094553	646.3061208982059	34.65	0.25232	34.65	34.507	34.759	0	-0.075957	0.0002063	NaN	22.736	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1701200	+		13099	15482	9457	9533							-0.03437576476017057
ETFDYLHRNP	10	Unmodified	_ETFDYLHRNP_					0	0	0			REV__ATP8A2|p.G252E|1|0.1|ENSG00000132932|chr13:25542022-25542022|G/A|missense_variant	REV__ATP8A2|p.G252E|1|0.1|ENSG00000132932|chr13:25542022-25542022|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	646.306926	1290.5993	-1.1205	-0.00072418	-3.1646	-0.0020453	-4.2851	-0.0027695	646.3046273334036	34.05	0.30383	34.802	34.55	34.853	0.75225	0.075957	-0.0025279	NaN	22.736	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5282900	+		13100	15482	9457	9533							-0.03437576476017057
ETFGFCGLLE	10	Unmodified	_ETFGFCGLLE_					0	0	0			REV__GCDH|p.L179F|1|0.22|ENSG00000105607|chr19:12896021-12896021|C/T|missense_variant	REV__GCDH|p.L179F|1|0.22|ENSG00000105607|chr19:12896021-12896021|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	558.2166748046875	2	558.257525	1114.5005	-0.78055	-0.00043575	1.4271	0.00079671	0.6466	0.00036097	558.2574982549694	40.202	0.25357	40.977	40.879	41.133	0.77451					5	4	2	0	0	0	0.6502	1	14908	14908		17.113	1.8644	1	487910	+		13101	26672	9458	9534	12777	12777					-0.05217315765253261
ETFHAGGI	8	Unmodified	_ETFHAGGI_					0	0	0			REV__ENSG00000187522|ENST00000378372|HSPA14	REV__ENSG00000187522|ENST00000378372|HSPA14	MULTI-SECPEP	A375_MHC_IP_R2	2	416.4307861328125	2	416.20341	830.392267	-0.096097	-3.9996E-05	-0.1157	-4.8156E-05	-0.2118	-8.8152E-05	416.20328056602466	41.653	0.45807	42.427	42.149	42.607	0.77451					13	8	2	0	0	0	0.94479	1	15498	15498		8.5933	0	1	1771200	+		13102	22024	9459	9535	12778	12778					-0.029713192335179883
ETFHPDPNW	9	Unmodified	_ETFHPDPNW_					0	0	0		ENSG00000076604|ENST00000262395|TRAF4	ENSG00000076604|ENST00000262395|TRAF4	ENSG00000076604|ENST00000262395|TRAF4	MULTI-MSMS	A375_MHC_IP_R2	2	572.190185546875	2	571.748713	1141.48287	-0.67844	-0.0003879	0.68001	0.0003888	0.0015707	8.9802E-07	571.7489281974282	59.341	0.45324	60.088	59.896	60.349	0.74714					16	8	3	0	0	0	0.59266	1	22497	22497		21.747	15.023	1	807360			13103	1637	9460	9536	12779	12779					-0.08220894975920601
ETFHTTDSF	9	Unmodified	_ETFHTTDSF_					0	0	0		nc|ENSG00000179397|Q5SY80-2|CATSPERE;ENSG00000179397|ENST00000366534|CATSPERE;nc|ENSG00000179397|Q5SY80-3|CATSPERE	nc|ENSG00000179397|Q5SY80-2|CATSPERE	nc|ENSG00000179397|Q5SY80-2|CATSPERE	MSMS	A375_MHC_IP_R1	1	542.6533203125	2	542.732729	1083.4509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.35	1	62.35	61.85	62.85	0								0	0	0	0.15486	1	22518	22518		7.9102	0.62092	1				13104	8227	9461	9537	12780	12780					-0.08748307449718595
ETFKLIEVL	9	Unmodified	_ETFKLIEVL_					0	0	0			REV__tr|U7SR06|U7SR06_FUSNUReleasefactorglutaminemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prmCPE=3SV=1	REV__tr|U7SR06|U7SR06_FUSNUReleasefactorglutaminemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prmCPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	1090.9320068359375	1	1091.63469	1090.62741	0.21321	0.00023275	1.9595	0.0021391	2.1727	0.0023718	1092.637927512055	118.04	0.60764	118.04	117.66	118.27	0					18	11	2	0	0	0	0.75466	1	43370	43370		1.8442	0	1	25399000	+		13105	28391	9462	9538	12781	12781					0.08572353451381787
ETFNPVSLW	9	Unmodified	_ETFNPVSLW_					0	0	0		BCAT1|p.G197E|1|0.57|ENSG00000060982|chr12:24849870-24849870|C/T|missense_variant	BCAT1|p.G197E|1|0.57|ENSG00000060982|chr12:24849870-24849870|C/T|missense_variant	BCAT1|p.G197E|1|0.57|ENSG00000060982|chr12:24849870-24849870|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	546.6768798828125	2	546.771657	1091.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.617	1	77.358	76.858	77.858	0.74052								0	0	0	0.14905	1	29090	29090		23.148	0	1				13106	227	9463	9539	12782	12782					-0.013342497936719155
ETFRHRARE	9	Unmodified	_ETFRHRARE_					0	0	0		ENST00000307275.7_2_17:43238146-43238251:+|nuORF	ENST00000307275.7_2_17:43238146-43238251:+|nuORF	ENST00000307275.7_2_17:43238146-43238251:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	600.7241821289062	2	601.312877	1200.6112	-0.37784	-0.0002272	0.3609	0.00021702	-0.016932	-1.0182E-05	601.3130650245878	73.648	0.86039	73.648	73.235	74.095	0					40	16	3	0	0	0	0.69507	1	26741	26741		9.3831	9.3831	1	7276300			13107	10587	9464	9540	12783	12783					0.018920850578297177
ETFRHRARE	9	Unmodified	_ETFRHRARE_					0	0	0		ENST00000307275.7_2_17:43238146-43238251:+|nuORF	ENST00000307275.7_2_17:43238146-43238251:+|nuORF	ENST00000307275.7_2_17:43238146-43238251:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	600.6817626953125	2	601.312877	1200.6112	-0.50935	-0.00030628	0.59789	0.00035952	0.088542	5.3242E-05	601.313074240039	72.957	0.91487	73.692	73.328	74.243	0.73541					41	17	4	0	0	0	0.53748	1	27563	27563		18.146	18.146	1	8934400			13108	10587	9464	9540	12784	12784					0.018920850578297177
ETFRKRWYLIY	11	Unmodified	_ETFRKRWYLIY_					0	0	0			REV__ENSG00000198839|ENST00000361822|ZNF277	REV__ENSG00000198839|ENST00000361822|ZNF277	MSMS	A375_MHC_IP_R2	2	525.7078857421875	3	525.620788	1573.84053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.951	1	66.689	66.189	67.189	0.73811								0	0	0	0.16336	1	25007	25007		1.2148	0.70888	1		+		13109	22429	9465	9541	12785	12785					0.07656659231111007
ETFSKGFIYP	10	Unmodified	_ETFSKGFIYP_					0	0	0			REV__ENST00000452219.5_1_7:131582417-131616988:+|nuORF	REV__ENST00000452219.5_1_7:131582417-131616988:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	397.2802429199219	3	396.869368	1187.58628	-0.3307	-0.00013125	2.4539	0.00097386	2.1232	0.00084262	396.8719415412504	37.995	0.25585	37.995	37.862	38.118	0					7	4	2	0	0	0	0.8528	1	12808	12808		18.721	4.5031	1	641590	+		13110	24899	9466	9542	12786	12786					-1.4075880699238041E-05
ETFSYPESY	9	Unmodified	_ETFSYPESY_					0	0	0		nc|ENSG00000047634|Q9UN30-1|SCML1;nc|ENSG00000047634|Q9UN30-2|SCML1;ENSG00000047634|ENST00000380041|SCML1	nc|ENSG00000047634|Q9UN30-1|SCML1	nc|ENSG00000047634|Q9UN30-1|SCML1	MSMS	A375_MHC_IP_R1	1	561.6659545898438	2	561.734937	1121.45532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.67	1	72.67	72.17	73.17	0								0	0	0	0.14905	1	26442	26442		23.148	2.2772	1				13111	1204	9467	9543	12787	12787					-0.10054843026796334
ETFSYPESY	9	Unmodified	_ETFSYPESY_					0	0	0		nc|ENSG00000047634|Q9UN30-1|SCML1;nc|ENSG00000047634|Q9UN30-2|SCML1;ENSG00000047634|ENST00000380041|SCML1	nc|ENSG00000047634|Q9UN30-1|SCML1	nc|ENSG00000047634|Q9UN30-1|SCML1	MSMS	A375_MHC_IP_R1	1	561.6668090820312	2	561.734937	1121.45532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.716	1	72.716	72.216	73.216	0								0	0	0	0.14359	1	26459	26459		28.487	11.545	1				13112	1204	9467	9543	12788	12788					-0.10054843026796334
ETFVGADINT	10	Unmodified	_ETFVGADINT_					0	0	0		ENST00000432943.6_1_8:121160081-121289735:+|nuORF;nc|ENSG00000187955|Q05707-3|COL14A1;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1	ENST00000432943.6_1_8:121160081-121289735:+|nuORF	ENST00000432943.6_1_8:121160081-121289735:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	533.6898803710938	2	533.756204	1065.49785	-0.74988	-0.00040025	-0.5283	-0.00028199	-1.2782	-0.00068224	533.7558611009872	77.917	0.66457	78.66	78.315	78.98	0.74294					20	12	2	0	0	0	0.6502	1	29548	29548		17.113	2.2746	1	2324500			13113	8869	9468	9544	12789	12789					-0.03227447898552782
ETFWPCFGAP	10	Unmodified	_ETFWPCFGAP_					0	0	0			REV__ENST00000378536.4_1_1:2239670-2239811:+|nuORF	REV__ENST00000378536.4_1_1:2239670-2239811:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	385.5924377441406	3	385.504032	1153.49027	0.087986	3.3919E-05	3.4693	0.0013374	3.5573	0.0013713	385.83991466558933	30.981	0.60805	30.981	30.806	31.414	0					16	11	2	0	0	0	0.94421	1	9926	9926		0.13989	0	1	1186000	+		13114	24179	9469	9545	12790	12790					-0.08033878699825436
ETFYMGLY	8	Unmodified	_ETFYMGLY_					0	0	0		ENST00000361464.7_1_10:103545820-103546054:-|nuORF	ENST00000361464.7_1_10:103545820-103546054:-|nuORF	ENST00000361464.7_1_10:103545820-103546054:-|nuORF	MSMS	A375_MHC_IP_R2	2	512.1788330078125	2	512.228236	1022.44192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.413	1	45.182	44.682	45.682	0.7691								0	0	0	0.16876	1	16574	16574		10.183	0	1				13115	11046	9470	9546	12791	12791					-0.06840372339740952
ETFYSTERY	9	Unmodified	_ETFYSTERY_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MULTI-MSMS	A375_MHC_IP_R1	1	598.6664428710938	2	598.266936	1194.51932	-0.27163	-0.00016251	-2.6187	-0.0015667	-2.8904	-0.0017292	598.2653579337637	42.652	1.1643	42.652	41.828	42.993	0					63	22	3	0	0	0	0.0092511	1	14774	14774		103.42	61.464	1	12379000			13116	7848	9471	9547	12792	12792					-0.07016062869843154
ETFYSTERY	9	Unmodified	_ETFYSTERY_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MULTI-MSMS	A375_MHC_IP_R2	2	598.6663208007812	2	598.266936	1194.51932	-0.49648	-0.00029703	-0.73144	-0.0004376	-1.2279	-0.00073462	598.2658796541826	42.008	1.0212	42.782	42.453	43.474	0.77451					43	19	4	0	0	0	0.0018976	1	15578	15578		145.13	107.16	1	14167000			13117	7848	9471	9547	12793	12793					-0.07016062869843154
ETGDQDYY	8	Unmodified	_ETGDQDYY_					0	0	0		nc|ENSG00000078549|P41586-5|ADCYAP1R1;nc|ENSG00000078549|P41586-3|ADCYAP1R1;ENSG00000078549|ENST00000304166|ADCYAP1R1;nc|ENSG00000078549|P41586-4|ADCYAP1R1;nc|ENSG00000078549|P41586-2|ADCYAP1R1;ADCYAP1R1|p.E140K|2|0.37|ENSG00000078549|chr7:31084230-31084230|G/A|missense_variant	nc|ENSG00000078549|P41586-5|ADCYAP1R1	nc|ENSG00000078549|P41586-5|ADCYAP1R1	MSMS	A375_MHC_IP_R2	2	495.6514892578125	2	495.687987	989.361421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.662	1	84.402	83.902	84.902	0.73962								0	0	0	0.16876	1	31799	31799		5.7604	0.52976	1				13118	1674	9472	9548	12794	12794					-0.1336856212908515
ETGECTGSYY	10	Unmodified	_ETGECTGSYY_					0	0	0		nc|ENSG00000183023|P32418-2|SLC8A1;nc|ENSG00000183023|P32418-3|SLC8A1;nc|ENSG00000183023|P32418-4|SLC8A1;nc|ENSG00000183023|P32418-5|SLC8A1;ENSG00000183023|ENST00000332839|SLC8A1;SLC8A1|p.E132Dfs*2|1|0.23|ENSG00000183023|chr2:40429878-40429885|AAACTGTT/-|frameshift_variant	nc|ENSG00000183023|P32418-2|SLC8A1	nc|ENSG00000183023|P32418-2|SLC8A1	MSMS	A375_MHC_IP_R1	1	555.192138671875	2	555.208229	1108.40191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.037	1	84.037	83.537	84.537	0								0	0	0	0.1552	1	30769	30769		3.9444	1.0552	1				13119	8456	9473	9549	12795	12795					-0.1479596380095245
ETGEQIQSWY	10	Unmodified	_ETGEQIQSWY_					0	0	0		DPP3|p.P479S|1|0.26|ENSG00000254986|chr11:66495251-66495251|C/T|missense_variant;nc|ENSG00000254986|Q9NY33-4|DPP3;ENSG00000254986|ENST00000531863|DPP3	DPP3|p.P479S|1|0.26|ENSG00000254986|chr11:66495251-66495251|C/T|missense_variant	DPP3|p.P479S|1|0.26|ENSG00000254986|chr11:66495251-66495251|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	621.1776733398438	2	620.777667	1239.54078	-0.49192	-0.00030537	0.23486	0.0001458	-0.25706	-0.00015958	620.7777626439188	40.272	0.86539	40.272	39.643	40.509	0					38	16	3	0	0	0	0.35113	1	13778	13778		52.268	21	1	4717000			13120	790	9474	9550	12796	12796					-0.06940677841134857
ETGFQSDPT	9	Unmodified	_ETGFQSDPT_					0	0	0			REV__ENSG00000139641|ENST00000394048|ESYT1	REV__ENSG00000139641|ENST00000394048|ESYT1	MULTI-SECPEP	A375_MHC_IP_R2	2	491.6475524902344	2	491.211629	980.408705	-0.45139	-0.00022173	0.022125	1.0868E-05	-0.42926	-0.00021086	491.21168862883854	27.343	0.20372	28.021	27.895	28.098	0.67857					5	3	2	0	0	0	0.75466	1	9276	9276		4.3292	4.3292	1	2029400	+		13121	19171	9475	9551	12797	12797					-0.08228282858090097
ETGGRVPL	8	Unmodified	_ETGGRVPL_					0	0	0			REV__ENST00000605886.1_1_1:156612267-156612468:-|nuORF	REV__ENST00000605886.1_1_1:156612267-156612468:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	415.2715148925781	2	414.732335	827.450116	0.07925	3.2868E-05	-0.57105	-0.00023683	-0.4918	-0.00020396	414.73225540475096	30.78	1.9811	30.78	30.453	32.434	0					81	38	4	0	0	0	0.77515	1	10021	10021		12.532	3.1484	1	58273000	+		13122	26535	9476	9552	12798	12798					0.02948942691909906
ETGIEAFELEA	11	Unmodified	_ETGIEAFELEA_					0	0	0		ENSG00000164082|ENST00000395052|GRM2	ENSG00000164082|ENST00000395052|GRM2	ENSG00000164082|ENST00000395052|GRM2	MULTI-SECPEP	A375_MHC_IP_R2	2	402.9400939941406	3	403.527559	1207.56085	-0.38231	-0.00015427	2.0617	0.00083194	1.6794	0.00067767	403.5282615853468	26.36	0.35539	27.02	26.754	27.109	0.65992					9	6	2	0	0	0	0.9754	1	8926	8926		4.1166	0	1	1194200			13123	6774	9477	9553	12799	12799					-0.034629269011929864
ETGIYYETW	9	Unmodified	_ETGIYYETW_					0	0	0		ENSG00000102805|ENST00000377453|CLN5	ENSG00000102805|ENST00000377453|CLN5	ENSG00000102805|ENST00000377453|CLN5	MULTI-MSMS	A375_MHC_IP_R1	1	581.2188110351562	2	581.258579	1160.50261	-0.15605	-9.0708E-05	-0.30711	-0.00017851	-0.46316	-0.00026922	581.2579202954697	101.73	1.4174	101.73	100.74	102.15	0					38	27	2	0	0	0	0.58047	1	37231	37231		15.847	3.3156	1	3542200			13124	2395	9478	9554	12800	12800					-0.0712256375582001
ETGKAKKH	8	Unmodified	_ETGKAKKH_					0	0	0			REV__ENSG00000178974|ENST00000313833|FBXO34	REV__ENSG00000178974|ENST00000313833|FBXO34	MULTI-MSMS	A375_MHC_IP_R2	2	450.1585693359375	2	449.758884	897.503215	-0.69357	-0.00031194	0.17526	7.8826E-05	-0.5183	-0.00023311	449.75892318711067	28.407	0.60944	29.086	28.604	29.214	0.67857					18	11	2	0	0	0	0.7256	1	9796	9796		26.884	2.2098	1	7216100	+		13125	21531	9479	9555	12801	12801					0.05036320474562217
ETGLLSSLFSI	11	Unmodified	_ETGLLSSLFSI_					0	0	0			REV__ENST00000487881.2_1_13:45010128-45010713:-|nuORF	REV__ENST00000487881.2_1_13:45010128-45010713:-|nuORF	MSMS	A375_MHC_IP_R2	2	583.6986083984375	2	583.818804	1165.62306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.572	1	77.312	76.812	77.812	0.74052								0	0	0	0.15016	1	29073	29073		20.415	7.3721	1		+		13126	25343	9480	9556	12802	12802					0.04686844237812693
ETGPQSRES	9	Unmodified	_ETGPQSRES_					0	0	0			REV__CHRM1|p.A248T|1|0.17|ENSG00000168539|chr11:62910359-62910359|C/T|missense_variant	REV__CHRM1|p.A248T|1|0.17|ENSG00000168539|chr11:62910359-62910359|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	495.66094970703125	2	495.727978	989.441402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.627	1	42.627	42.127	43.127	0								0	0	0	0.15331	1	14779	14779		16.149	3.1066	1		+		13127	15776	9481	9557	12803	12803					-0.05374075735232964
ETGTLALEV	9	Unmodified	_ETGTLALEV_					0	0	0			REV__CFAP47|p.G406E|1|0.94|ENSG00000165164|chrX:35956003-35956003|G/A|missense_variant	REV__CFAP47|p.G406E|1|0.94|ENSG00000165164|chrX:35956003-35956003|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	933.29052734375	1	932.493504	931.486227	0.15133	0.00014112	-0.49239	-0.00045915	-0.34106	-0.00031803	932.4931478181416	106.59	0.87035	106.59	106.21	107.08	0					40	16	3	0	0	0	0.03063	1	39050	39050		74.423	16.951	1	10266000	+		13128	15645	9482	9558	12804	12804					0.01774355078100598
ETGTLALEV	9	Unmodified	_ETGTLALEV_					0	0	0			REV__CFAP47|p.G406E|1|0.94|ENSG00000165164|chrX:35956003-35956003|G/A|missense_variant	REV__CFAP47|p.G406E|1|0.94|ENSG00000165164|chrX:35956003-35956003|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	932.493504	931.486227	0.15133	0.00014112	-0.49239	-0.00045915	-0.34106	-0.00031803	932.4931478181416	106.59	0.87035	106.59	106.21	107.08	0	-0.017506	-0.00038086	NaN	74.423	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10266000	+		13129	15645	9482	9558							0.01774355078100598
ETGTLALEV	9	Unmodified	_ETGTLALEV_					0	0	0			REV__CFAP47|p.G406E|1|0.94|ENSG00000165164|chrX:35956003-35956003|G/A|missense_variant	REV__CFAP47|p.G406E|1|0.94|ENSG00000165164|chrX:35956003-35956003|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		1	932.493504	931.486227	-0.2615	-0.00024385	0.0058668	5.4707E-06	-0.25563	-0.00023838	932.4933920364671	105.87	0.66281	106.63	106.27	106.94	0.75977	0.017506	8.376E-05	NaN	74.423	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8977500	+		13130	15645	9482	9558							0.01774355078100598
ETGWFFPKQ	9	Unmodified	_ETGWFFPKQ_					0	0	0			REV__ENSG00000102174|ENST00000379374|PHEX	REV__ENSG00000102174|ENST00000379374|PHEX	MULTI-SECPEP	A375_MHC_IP_R2	2	570.1614379882812	2	570.279649	1138.54475	-0.42508	-0.00024241	3.0291	0.0017274	2.604	0.001485	570.7816267005638	39.249	0.61115	40.024	39.76	40.371	0.77451					22	11	3	0	0	0	0.63327	1	14556	14556		24.021	8.1734	1	1938600	+		13131	17209	9483	9559	12805	12805					-0.018985435567628883
ETHERTVNHIY	11	Unmodified	_ETHERTVNHIY_					0	0	0			REV__SIRPB2|p.G123E|1|0.37|ENSG00000196209|chr20:1479783-1479783|C/T|missense_variant	REV__SIRPB2|p.G123E|1|0.37|ENSG00000196209|chr20:1479783-1479783|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	699.9315795898438	2	699.841665	1397.66878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.25	1	110.99	110.49	111.49	0.73692								0	0	0	0.16108	1	41592	41592		13.042	0	1		+		13132	27967	9484	9560	12806	12806					-0.014151175272218097
ETHEVPSSTY	10	Unmodified	_ETHEVPSSTY_					0	0	0		ENSG00000146072|ENST00000296861|TNFRSF21	ENSG00000146072|ENST00000296861|TNFRSF21	ENSG00000146072|ENST00000296861|TNFRSF21	MULTI-SECPEP	A375_MHC_IP_R1	1	575.6574096679688	2	575.256568	1148.49858	-0.19323	-0.00011116	0.71613	0.00041196	0.52289	0.0003008	575.2569605023277	87.859	0.56102	87.859	87.542	88.103	0					26	10	3	0	0	0	0.61429	1	32220	32220		37.974	11.09	1	5589200			13133	5603	9485	9561	12807	12807					-0.06972653249499672
ETHEVPSSTY	10	Unmodified	_ETHEVPSSTY_					0	0	0		ENSG00000146072|ENST00000296861|TNFRSF21	ENSG00000146072|ENST00000296861|TNFRSF21	ENSG00000146072|ENST00000296861|TNFRSF21	MULTI-SECPEP	A375_MHC_IP_R2	2	575.656982421875	2	575.256568	1148.49858	-0.091313	-5.2528E-05	0.70375	0.00040483	0.61243	0.00035231	575.2567974912572	87.274	0.80843	88.007	87.56	88.368	0.733					31	15	3	0	0	0	0.72086	1	33168	33168		30.637	6.8468	1	4810500			13134	5603	9485	9561	12808	12808					-0.06972653249499672
ETHEYPHFSH	10	Unmodified	_ETHEYPHFSH_					0	0	0		OAS1|p.G369E|1|0.25|ENSG00000089127|chr12:112919456-112919456|G/A|missense_variant	OAS1|p.G369E|1|0.25|ENSG00000089127|chr12:112919456-112919456|G/A|missense_variant	OAS1|p.G369E|1|0.25|ENSG00000089127|chr12:112919456-112919456|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	642.1919555664062	2	642.275626	1282.5367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.642	1	36.642	36.142	37.142	0								0	0	0	0.15158	1	12279	12279		14.838	4.0143	1				13135	15042	9486	9562	12809	12809					-0.0932672254418776
ETHIIDHLT	9	Unmodified	_ETHIIDHLT_					0	0	0			REV__ENST00000522234.5_1_X:47078210-47085639:+|nuORF	REV__ENST00000522234.5_1_X:47078210-47085639:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	539.6871948242188	2	539.780013	1077.54547	-0.91871	-0.0004959	2.7489	0.0014838	1.8302	0.00098789	539.7798366726702	27.968	0.4565	28.647	28.351	28.808	0.67857					22	8	4	0	0	0	0.58271	1	9501	9501		26.884	2.0021	1	3043500	+		13136	25727	9487	9563	12810	12810					0.009802510922781948
ETHLAKVDAY	10	Unmodified	_ETHLAKVDAY_					0	0	0			REV__nc|ENSG00000181381|Q5H9U9-2|DDX60L;REV__ENST00000503190.1_1_4:169317058-169322080:-|nuORF	REV__nc|ENSG00000181381|Q5H9U9-2|DDX60L	MULTI-SECPEP	A375_MHC_IP_R1	1	383.5890808105469	3	382.864506	1145.57169	0.35229	0.00013488	1.2464	0.00047721	1.5987	0.00061208	382.86525799944667	53.553	0.45698	53.553	53.301	53.758	0					11	8	2	0	0	0	0.72086	1	19142	19142		20.581	4.4318	1	1309100	+		13137	15981;25512	9488	9564	12811	12811					0.0047252026377009315
ETHPSTVSKW	10	Unmodified	_ETHPSTVSKW_					0	0	0			REV__ENSG00000179270|ENST00000331664|PCARE	REV__ENSG00000179270|ENST00000331664|PCARE	MULTI-SECPEP	A375_MHC_IP_R1	1	391.2911682128906	3	391.196256	1170.56694	0.094296	3.6888E-05	0.59905	0.00023435	0.69335	0.00027123	391.1965054624396	34.328	0.80988	34.328	33.798	34.608	0					24	15	2	0	0	0	0.8125	1	11249	11249		15.739	0.78146	1	5762000	+		13138	21550	9489	9565	12812	12812					-0.011523638789867618
ETHRDLSSW	9	Unmodified	_ETHRDLSSW_					0	0	0		ENSG00000168807|ENST00000336278|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	MSMS	A375_MHC_IP_R1	1	565.6627807617188	2	565.764894	1129.51524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.606	1	29.606	29.106	30.106	0								0	0	0	0.15069	1	9301	9301		20.454	1.1966	1				13139	7347	9490	9566	12813	12813					-0.04434107572888024
ETHTLHLQPQ	10	Unmodified	_ETHTLHLQPQ_					0	0	0		nc|ENSG00000170325|Q9NQV6|PRDM10;ENSG00000170325|ENST00000360871|PRDM10;nc|ENSG00000170325|Q9NQV6-7|PRDM10;nc|ENSG00000170325|Q9NQV6-6|PRDM10;nc|ENSG00000170325|Q9NQV6-2|PRDM10;nc|ENSG00000170325|Q9NQV6-1|PRDM10;nc|ENSG00000170325|Q9NQV6-5|PRDM10	nc|ENSG00000170325|Q9NQV6|PRDM10	nc|ENSG00000170325|Q9NQV6|PRDM10	MULTI-SECPEP	A375_MHC_IP_R1	1	401.2535095214844	3	401.875405	1202.60439	-0.32685	-0.00013135	0.096802	3.8902E-05	-0.23004	-9.2449E-05	401.8754111868672	25.15	0.70964	25.15	24.852	25.562	0					31	13	3	0	0	0	0.90513	1	7349	7349		2.6312	0	1	18651000			13140	7495	9491	9567	12814	12814					0.011187273866198666
ETHYTQWHY	9	Unmodified	_ETHYTQWHY_					0	0	0			REV__ENSG00000215529|ENST00000400522|EFCAB8	REV__ENSG00000215529|ENST00000400522|EFCAB8	MULTI-SECPEP	A375_MHC_IP_R1	1	632.5908203125	2	632.772719	1263.53089	-0.65487	-0.00041438	-4.1412	-0.0026205	-4.7961	-0.0030348	633.2712773437468	96.095	0.20328	96.095	95.968	96.171	0					5	3	2	0	0	0	0.71541	1	35329	35329		7.2892	5.0065	1	919320	+		13141	22677	9492	9568	12815	12815					-0.09033821055845692
ETIEFVQVERS	11	Unmodified	_ETIEFVQVERS_					0	0	0			REV__ENSG00000163359|ENST00000295550|COL6A3	REV__ENSG00000163359|ENST00000295550|COL6A3	MULTI-SECPEP	A375_MHC_IP_R2	2	445.9610900878906	3	446.229625	1335.66705	-0.67363	-0.00030059	2.03	0.00090585	1.3564	0.00060526	446.23045741365473	23.364	0.3536	23.994	23.878	24.232	0.63015					9	6	2	0	0	0	0.99018	1	7509	7509		2.084	0.86914	1	4078500	+		13142	20352	9493	9569	12816	12816					0.012638286641276864
ETIGFAVYEVP	11	Unmodified	_ETIGFAVYEVP_					0	0	0		ENSG00000014216|ENST00000279247|CAPN1;ENST00000533079.5_1_11:64955425-64973207:+|nuORF	ENSG00000014216|ENST00000279247|CAPN1	ENSG00000014216|ENST00000279247|CAPN1	MULTI-SECPEP	A375_MHC_IP_R2	2	612.5806884765625	2	612.810979	1223.6074	-0.44361	-0.00027185	-0.26005	-0.00015936	-0.70367	-0.00043121	612.8107163299076	90.51	1.0641	91.244	90.804	91.868	0.73451					55	20	4	0	0	0	0.78118	1	34565	34565		26.268	0	1	10756000			13143	1030	9494	9570	12817	12817					0.0045455772076365974
ETIGPRSFSFS	11	Unmodified	_ETIGPRSFSFS_					0	0	0			REV__ENST00000435519.6_1_7:99809411-99820265:-|nuORF	REV__ENST00000435519.6_1_7:99809411-99820265:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	409.90118408203125	3	409.87166	1226.59315	-0.028702	-1.1764E-05	1.1877	0.00048681	1.159	0.00047504	409.8722615689012	50.272	0.56271	50.272	49.998	50.561	0					12	10	2	0	0	0	0.72651	1	17744	17744		12.228	0.052842	1	938410	+		13144	23610	9495	9571	12818	12818					-0.011080947075242875
ETIGPRSFSFS	11	Unmodified	_ETIGPRSFSFS_					0	0	0			REV__ENST00000435519.6_1_7:99809411-99820265:-|nuORF	REV__ENST00000435519.6_1_7:99809411-99820265:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	409.87166	1226.59315	-0.028702	-1.1764E-05	1.1877	0.00048681	1.159	0.00047504	409.8722615689012	50.272	0.56271	50.272	49.998	50.561	0	0.025304	0.0011381	NaN	12.228	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	938410	+		13145	23610	9495	9571							-0.011080947075242875
ETIGPRSFSFS	11	Unmodified	_ETIGPRSFSFS_					0	0	0			REV__ENST00000435519.6_1_7:99809411-99820265:-|nuORF	REV__ENST00000435519.6_1_7:99809411-99820265:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	409.87166	1226.59315	-0.2816	-0.00011542	0.2007	8.2261E-05	-0.080901	-3.3159E-05	409.87168395692106	49.464	0.40281	50.221	49.995	50.398	0.75737	-0.025304	-7.5539E-05	NaN	12.228	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1487800	+		13146	23610	9495	9571							-0.011080947075242875
ETIGVEDMKW	10	Unmodified	_ETIGVEDMKW_					0	0	0			REV__nc|ENSG00000101977|P10911-6|MCF2	REV__nc|ENSG00000101977|P10911-6|MCF2	MULTI-SECPEP	A375_MHC_IP_R2	2	402.96282958984375	3	403.193635	1206.55907	-0.28451	-0.00011471	1.6158	0.00065148	1.3313	0.00053677	403.5288671413664	23.435	0.20083	24.065	23.928	24.129	0.63015					7	3	3	0	0	0	0.9269	1	7560	7560		6.1918	2.3155	1	1914100	+		13147	17196	9496	9572	12819	12819					-0.03594259190799676
ETIHDYLKV	9	Unmodified	_ETIHDYLKV_					0	0	0		CSMD3|p.E2166K|1|0.12|ENSG00000164796|chr8:112341633-112341633|C/T|missense_variant	CSMD3|p.E2166K|1|0.12|ENSG00000164796|chr8:112341633-112341633|C/T|missense_variant	CSMD3|p.E2166K|1|0.12|ENSG00000164796|chr8:112341633-112341633|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	559.697021484375	2	559.298039	1116.58152	-0.66992	-0.00037468	-0.60385	-0.00033773	-1.2738	-0.00071242	559.297870747074	28.777	1.5163	28.777	27.937	29.453	0					62	29	3	0	0	0	0.61758	1	8907	8907		22.736	22.736	1	3182100			13148	673	9497	9573	12820	12820					0.027897082691197284
ETIIHNRNKW	10	Unmodified	_ETIIHNRNKW_					0	0	0		ENST00000401596.1_1_6:6535542-6535761:+|nuORF	ENST00000401596.1_1_6:6535542-6535761:+|nuORF	ENST00000401596.1_1_6:6535542-6535761:+|nuORF	MSMS	A375_MHC_IP_R2	2	437.6168518066406	3	437.570316	1309.68912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.043	1	19.646	19.146	20.146	0.60308								0	0	0	0.15308	1	5789	5789		6.1918	2.3459	1				13149	11559	9498	9574	12821	12821					0.04666097923222878
ETINKQIFSH	10	Unmodified	_ETINKQIFSH_					0	0	0			REV__ENSG00000114656|ENST00000645291|CFAP92	REV__ENSG00000114656|ENST00000645291|CFAP92	MULTI-SECPEP	A375_MHC_IP_R1	1	405.6032409667969	3	406.215539	1215.62479	-0.40215	-0.00016336	-0.075493	-3.0667E-05	-0.47764	-0.00019403	406.5497549101065	19.688	0.45765	19.688	19.42	19.877	0					11	8	2	0	0	0	0.90513	1	5013	5013		7.4771	2.0744	1	1361300	+		13150	17837	9499	9575	12822	12822					0.025598980464110355
ETINMCLQY	9	Unmodified	_ETINMCLQY_					0	0	0		nc|ENSG00000136813|Q5VYK3|ECPAS;ENSG00000136813|ENST00000684092|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-MSMS	A375_MHC_IP_R2	2	557.6561279296875	2	557.74901	1113.48347	-1.419	-0.00079146	-0.54113	-0.00030181	-1.9602	-0.0010933	557.7486076677072	29.484	0.75779	30.183	29.981	30.739	0.69872					28	14	4	0	0	0	0.32899	1	10458	10458		28.487	13.649	1	6410400			13151	4820	9500	9576	12823	12823					-0.0687355964271319
ETIPDHPDLL	10	Unmodified	_ETIPDHPDLL_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	A375_MHC_IP_R1	1	384.28643798828125	3	383.864394	1148.57135	0.29155	0.00011192	0.37403	0.00014358	0.66558	0.00025549	383.86413379569734	34.782	0.86377	34.782	34.405	35.269	0					30	16	3	0	0	0	0.72086	1	11427	11427		11.518	0	1	10185000			13152	1612	9501	9577	12824	12824					0.003011005439020664
ETIPDHPDLL	10	Unmodified	_ETIPDHPDLL_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	A375_MHC_IP_R2	2	384.26434326171875	3	383.864394	1148.57135	-0.57007	-0.00021883	0.27402	0.00010519	-0.29605	-0.00011364	383.8644023152138	34.02	0.505	34.772	34.45	34.955	0.75225					19	6	4	0	0	0	0.52461	1	12196	12196		24.882	0	1	9347400			13153	1612	9501	9577	12825	12825					0.003011005439020664
ETIQQLLT	8	Unmodified	_ETIQQLLT_					0	0	0		ENSG00000163872|ENST00000305135|YEATS2;ENST00000497765.1_1_3:183515808-183519351:+|nuORF	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-MSMS	A375_MHC_IP_R2	2	473.70965576171875	2	473.266207	944.517862	-1.1474	-0.00054302	0.38564	0.00018251	-0.76176	-0.00036051	473.2662893267095	53.218	1.0241	53.969	53.688	54.712	0.75105					60	19	6	0	0	0	0.73622	1	20262	20262		24.021	0.87215	1	41850000			13154	6736	9502	9578	12826	12826					0.04338347832049294
ETIRGETIY	9	Unmodified	_ETIRGETIY_					0	0	0			REV__ENST00000442255.5_1_3:16313687-16345066:+|nuORF	REV__ENST00000442255.5_1_3:16313687-16345066:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	542.68017578125	2	541.279846	1080.54514	-1.1533	-0.00062424	0.14762	7.9903E-05	-1.0056	-0.00054433	541.2801137352819	56.376	1.5812	57.126	56.337	57.918	0.75015					95	30	4	0	0	0	0.51106	1	21172	21172		19.257	1.1106	1	108810000	+		13155	19900	9503	9579	12827	12827					0.008088313724556428
ETISCKKPNPV	11	Unmodified	_ETISCKKPNPV_					0	0	0		SVEP1|p.A2772T|1|0.32|ENSG00000165124|chr9:110407286-110407286|C/T|missense_variant	SVEP1|p.A2772T|1|0.32|ENSG00000165124|chr9:110407286-110407286|C/T|missense_variant	SVEP1|p.A2772T|1|0.32|ENSG00000165124|chr9:110407286-110407286|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	406.28424072265625	3	405.884913	1214.63291	-0.81392	-0.00033036	-1.0388	-0.00042165	-1.8528	-0.00075201	405.88456627727624	29.299	0.30504	29.299	29.098	29.403	0					15	5	3	0	0	0	0.72565	1	9171	9171		7.0371	0	1	4564500			13156	29275	9504	9580	12828	12828					0.03417708971528555
ETITEVNRIY	10	Unmodified	_ETITEVNRIY_					0	0	0		tr|U7STC5|U7STC5_FUSNUThreonine/serineexporter-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01363PE=3SV=1	tr|U7STC5|U7STC5_FUSNUThreonine/serineexporter-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01363PE=3SV=1	tr|U7STC5|U7STC5_FUSNUThreonine/serineexporter-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01363PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	618.6920776367188	2	619.324785	1236.63502	-0.4801	-0.00029734	-0.073214	-4.5344E-05	-0.55332	-0.00034268	619.3248030245127	76.779	0.35746	76.779	76.572	76.93	0					11	6	2	0	0	0	0.79457	1	27980	27980		20.415	6.5085	1	2054400			13157	29679	9505	9581	12829	12829					0.02616460981016644
ETITEVNRIY	10	Unmodified	_ETITEVNRIY_					0	0	0		tr|U7STC5|U7STC5_FUSNUThreonine/serineexporter-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01363PE=3SV=1	tr|U7STC5|U7STC5_FUSNUThreonine/serineexporter-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01363PE=3SV=1	tr|U7STC5|U7STC5_FUSNUThreonine/serineexporter-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01363PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	620.2257080078125	2	619.324785	1236.63502	-0.68045	-0.00042142	0.035206	2.1804E-05	-0.64524	-0.00039962	619.3247112186899	76.038	0.55709	76.779	76.538	77.095	0.74052					21	10	3	0	0	0	0.49952	1	28866	28866		39.95	1.7741	1	2533600			13158	29679	9505	9581	12830	12830					0.02616460981016644
ETITEVNRIY	10	Unmodified	_ETITEVNRIY_					0	0	0		tr|U7STC5|U7STC5_FUSNUThreonine/serineexporter-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01363PE=3SV=1	tr|U7STC5|U7STC5_FUSNUThreonine/serineexporter-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01363PE=3SV=1	tr|U7STC5|U7STC5_FUSNUThreonine/serineexporter-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01363PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	619.324785	1236.63502	-0.68045	-0.00042142	0.035206	2.1804E-05	-0.64524	-0.00039962	619.3247112186899	76.038	0.55709	76.779	76.538	77.095	0.74052	-0.00011833	9.9105E-05	NaN	39.95	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2533600			13159	29679	9505	9581							0.02616460981016644
ETIVERYRQA	10	Unmodified	_ETIVERYRQA_					0	0	0		ENSG00000152503|ENST00000513154|TRIM36;nc|ENSG00000152503|Q9NQ86|TRIM36	ENSG00000152503|ENST00000513154|TRIM36	ENSG00000152503|ENST00000513154|TRIM36	MULTI-MSMS	A375_MHC_IP_R2	2	422.2831115722656	3	422.226326	1263.65715	-0.43205	-0.00018242	0.18661	7.879E-05	-0.24545	-0.00010363	422.2263730966603	24.391	0.25358	25.035	24.857	25.11	0.64368					7	4	2	0	0	0	0.62871	1	7969	7969		18.721	0.38151	1	8209900			13160	5970	9506	9582	12831	12831					0.0358668544943157
ETKDRYFI	8	Unmodified	_ETKDRYFI_					0	0	0			REV__nc|ENSG00000170242|Q96K76-2|USP47	REV__nc|ENSG00000170242|Q96K76-2|USP47	MULTI-SECPEP	A375_MHC_IP_R2	2	357.95245361328125	3	357.85383	1070.53966	-0.24266	-8.6838E-05	0.0082936	2.9679E-06	-0.23437	-8.387E-05	357.85369740856873	31.038	0.40704	31.757	31.567	31.974	0.71857					10	7	2	0	0	0	0.97144	1	10994	10994		3.5965	1.3137	1	1217400	+		13161	20976	9507	9583	12832	12832					0.007211525806042118
ETKDWRPNRAV	11	Unmodified	_ETKDWRPNRAV_					0	0	0		ENST00000316084.9_1_X:71492477-71493137:-|nuORF	ENST00000316084.9_1_X:71492477-71493137:-|nuORF	ENST00000316084.9_1_X:71492477-71493137:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	458.6339111328125	3	457.909109	1370.7055	-0.42753	-0.00019577	1.5492	0.0007094	1.1217	0.00051363	458.2435426598733	27.053	0.19977	27.053	26.928	27.128	0					5	3	2	0	0	0	0.99252	1	8121	8121		8.2864	5.8516	1	878610			13162	10660	9508	9584	12833	12833					0.03497179089322344
ETKEKILKL	9	Unmodified	_ETKEKILKL_					0	0	0		tr|U7T4U4|U7T4U4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00558PE=4SV=1	tr|U7T4U4|U7T4U4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00558PE=4SV=1	tr|U7T4U4|U7T4U4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00558PE=4SV=1	MSMS	A375_MHC_IP_R1	1	367.9363098144531	3	367.90078	1100.68051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.382	1	26.382	25.882	26.882	0								0	0	0	0.15486	1	7856	7856		10.151	1.3988	1				13163	30003	9509	9585	12834	12834					0.1341973123403477
ETKFFFFSLFF	11	Unmodified	_ETKFFFFSLFF_					0	0	0			REV__ENST00000600988.1_1_19:36249429-36249696:+|nuORF	REV__ENST00000600988.1_1_19:36249429-36249696:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	487.3151550292969	3	487.248068	1458.72238	-0.65445	-0.00031888	3.4168	0.0016648	2.7623	0.0013459	487.2502834644335	41.479	0.30592	41.479	41.215	41.521	0					8	5	2	0	0	0	0.99847	1	14339	14339		2.8433	2.3373	1	1513900	+		13164	26504	9510	9586	12835	12835					0.0113628692254224
ETKFSKDCAP	10	Unmodified	_ETKFSKDCAP_					0	0	0			REV__ENSG00000168724|ENST00000648817|DNAJC21	REV__ENSG00000168724|ENST00000648817|DNAJC21	MULTI-SECPEP	A375_MHC_IP_R2	2	562.6797485351562	2	563.265881	1124.51721	-0.81901	-0.00046132	-0.66224	-0.00037302	-1.4812	-0.00083434	563.26532199774	51.794	0.357	52.546	52.372	52.729	0.75225					10	6	2	0	0	0	0.91556	1	19466	19466		6.2058	0	1	1690100	+		13165	20880	9511	9587	12836	12836					-0.04006814879312515
ETKIKKPKY	9	Unmodified	_ETKIKKPKY_					0	0	0			REV__ENSG00000198900|ENST00000361337|TOP1	REV__ENSG00000198900|ENST00000361337|TOP1	MULTI-SECPEP	A375_MHC_IP_R2	2	379.6203308105469	3	378.900891	1133.68084	-0.34404	-0.00013036	-3.5888	-0.0013598	-3.9329	-0.0014902	378.8988482906892	25.828	0.50993	26.488	26.347	26.857	0.65992					11	9	2	0	0	0	0.80101	1	8661	8661		2.7352	0.23671	1	1272000	+		13166	22442	9512	9588	12837	12837					0.1193515095390012
ETKIQHEELN	10	Unmodified	_ETKIQHEELN_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-MSMS	A375_MHC_IP_R2	2	414.6104736328125	3	414.210453	1239.60953	-0.27831	-0.00011528	-0.066487	-2.754E-05	-0.3448	-0.00014282	414.21046102510144	24.226	0.45874	24.87	24.55	25.009	0.64368					15	8	3	0	0	0	0.70496	1	7970	7970		5.7834	0.58499	1	5332900			13167	2362	9513	9589	12838	12838					-0.0006901354142883065
ETKIQHEELN	10	Unmodified	_ETKIQHEELN_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-MATCH	A375_MHC_IP_R1	1		3	414.210453	1239.60953	0.30281	0.00012543	-1.3064	-0.0005411	-1.0035	-0.00041568	414.5439722743559	24.932	0.45686	24.932	24.647	25.104	0	0.031217	-0.0012489	NaN	5.7834	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2990600			13168	2362	9513	9589							-0.0006901354142883065
ETKKAEPP	8	Unmodified	_ETKKAEPP_					0	0	0			REV__ENSG00000182463|ENST00000371497|TSHZ2	REV__ENSG00000182463|ENST00000371497|TSHZ2	MSMS	A375_MHC_IP_R2	2	450.1424255371094	2	450.245275	898.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.047	1	34.8	34.3	35.3	0.75225								0	0	0	0.16876	1	12245	12245		14.838	2.3067	1		+		13169	21690	9514	9590	12839	12839					0.022697921435110402
ETKKAEPP	8	Unmodified	_ETKKAEPP_					0	0	0			REV__ENSG00000182463|ENST00000371497|TSHZ2	REV__ENSG00000182463|ENST00000371497|TSHZ2	MSMS	A375_MHC_IP_R2	2	450.6688537597656	2	450.245275	898.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.061	1	34.813	34.313	35.313	0.75225								0	0	0	0.16876	1	12250	12250		13.042	1.4022	1		+		13170	21690	9514	9590	12840	12840					0.022697921435110402
ETKKDHPYTW	10	Unmodified	_ETKKDHPYTW_					0	0	0		nc|ENSG00000214517|Q9Y570-2|PPME1;ENSG00000214517|ENST00000328257|PPME1;ENST00000538501.5_1_11:73950145-73964552:+|nuORF;nc|ENSG00000214517|Q9Y570-3|PPME1;ENST00000541340.5_1_11:73950145-73962300:+|nuORF	nc|ENSG00000214517|Q9Y570-2|PPME1	nc|ENSG00000214517|Q9Y570-2|PPME1	MULTI-MSMS	A375_MHC_IP_R2	2	435.9467468261719	3	435.547177	1303.6197	-0.62639	-0.00027282	1.4815	0.00064525	0.85509	0.00037243	435.5471315703565	22.823	0.51002	23.453	23.062	23.572	0.63015					24	9	4	0	0	0	0.11665	1	7260	7260		44.392	16.211	1	6830400			13171	9619	9515	9591	12841	12841					-0.019964058162031506
ETKKDHPYTW	10	Unmodified	_ETKKDHPYTW_					0	0	0		nc|ENSG00000214517|Q9Y570-2|PPME1;ENSG00000214517|ENST00000328257|PPME1;ENST00000538501.5_1_11:73950145-73964552:+|nuORF;nc|ENSG00000214517|Q9Y570-3|PPME1;ENST00000541340.5_1_11:73950145-73962300:+|nuORF	nc|ENSG00000214517|Q9Y570-2|PPME1	nc|ENSG00000214517|Q9Y570-2|PPME1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	435.547177	1303.6197	-0.4638	-0.00020201	1.9943	0.00086861	1.5305	0.00066661	435.547148083541	23.582	0.40663	23.582	23.432	23.838	0	0.064285	0.00032486	NaN	44.392	20	7	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11682000			13172	9619	9515	9591							-0.019964058162031506
ETKKKEQLI	9	Unmodified	_ETKKKEQLI_					0	0	0			REV__ENST00000581917.1_1_17:49328600-49328702:-|nuORF	REV__ENST00000581917.1_1_17:49328600-49328702:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	373.60504150390625	3	372.892284	1115.65502	0.49507	0.00018461	0.88513	0.00033006	1.3802	0.00051467	373.22659360059413	27.371	0.30638	28.05	27.792	28.098	0.67857					7	5	2	0	0	0	0.78753	1	9303	9303		4.897	3.2444	1	2257800	+		13173	26353	9516	9592	12842	12842					0.1018225671161872
ETKKKVFLW	9	Unmodified	_ETKKKVFLW_					0	0	0		ENSG00000122376|ENST00000298786|SHLD2;nc|ENSG00000122376|Q86V20|SHLD2;ENST00000323387.5_10:47380981-47400428:+|nuORF	ENSG00000122376|ENST00000298786|SHLD2	ENSG00000122376|ENST00000298786|SHLD2	MULTI-MSMS	A375_MHC_IP_R1	1	393.9693908691406	3	393.569253	1177.68593	0.060116	2.366E-05	0.063597	2.503E-05	0.12371	4.869E-05	393.56928899941505	46.299	0.50241	46.299	46.043	46.545	0					16	9	2	0	0	0	0.39434	1	16232	16232		24.991	14.092	1	3791300			13174	3776	9517	9593	12843	12843					0.10419454816496909
ETKKKVFLW	9	Unmodified	_ETKKKVFLW_					0	0	0		ENSG00000122376|ENST00000298786|SHLD2;nc|ENSG00000122376|Q86V20|SHLD2;ENST00000323387.5_10:47380981-47400428:+|nuORF	ENSG00000122376|ENST00000298786|SHLD2	ENSG00000122376|ENST00000298786|SHLD2	MULTI-MSMS	A375_MHC_IP_R2	2	393.9691162109375	3	393.569253	1177.68593	-0.25729	-0.00010126	0.084173	3.3128E-05	-0.17312	-6.8135E-05	393.56924518895056	45.177	0.45635	45.942	45.694	46.15	0.76519					24	8	4	0	0	0	0.3489	1	16864	16864		27.223	11.975	1	4279300			13175	3776	9517	9593	12844	12844					0.10419454816496909
ETKKKVFLW	9	Unmodified	_ETKKKVFLW_					0	0	0		ENSG00000122376|ENST00000298786|SHLD2;nc|ENSG00000122376|Q86V20|SHLD2;ENST00000323387.5_10:47380981-47400428:+|nuORF	ENSG00000122376|ENST00000298786|SHLD2	ENSG00000122376|ENST00000298786|SHLD2	MULTI-SECPEP	A375_MHC_IP_R2	2	589.2056274414062	2	589.850242	1177.68593	-0.65165	-0.00038437	0.67991	0.00040105	0.028267	1.6673E-05	590.3525386507849	45.18	0.25174	45.945	45.746	45.997	0.76518					6	4	2	0	0	0	0.74651	1	16851	16851		8.5933	3.8373	1	716350			13176	3776	9517	9593	12845	12845					0.10419454816496909
ETKKLRKLLVG	11	Unmodified	_ETKKLRKLLVG_					0	0	0		tr|U7SPC3|U7SPC3_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01811PE=3SV=1	tr|U7SPC3|U7SPC3_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01811PE=3SV=1	tr|U7SPC3|U7SPC3_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01811PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	643.2127685546875	2	642.921729	1283.82891	-0.6182	-0.00039746	-1.464	-0.00094126	-2.0822	-0.0013387	643.4208606411172	91.202	0.30392	91.936	91.767	92.071	0.73451					6	5	2	0	0	0	0.99921	1	34661	34661		1.3295	0	1	1012100			13177	29579	9518	9594	12846	12846					0.19834462207745673
ETKLDFRII	9	Unmodified	_ETKLDFRII_					0	0	0			REV__nc|ENSG00000130558|Q99784-5|OLFM1	REV__nc|ENSG00000130558|Q99784-5|OLFM1	MULTI-SECPEP	A375_MHC_IP_R2	2	568.2290649414062	2	567.829506	1133.64446	-0.58075	-0.00032977	0.020676	1.174E-05	-0.56007	-0.00031803	567.8294871548328	56.048	0.35784	56.798	56.591	56.948	0.75014					11	6	2	0	0	0	0.59614	1	21223	21223		18.146	18.146	1	1903700	+		13178	18548	9519	9595	12847	12847					0.08298274057187882
ETKLDFRII	9	Unmodified	_ETKLDFRII_					0	0	0			REV__nc|ENSG00000130558|Q99784-5|OLFM1	REV__nc|ENSG00000130558|Q99784-5|OLFM1	MULTI-MATCH	A375_MHC_IP_R1	1		2	567.829506	1133.64446	-0.28465	-0.00016163	-0.53963	-0.00030642	-0.82429	-0.00046805	567.8291273182255	57.008	0.45864	57.008	56.804	57.263	0	0.10476	-0.00027768	NaN	18.146	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2051100	+		13179	18548	9519	9595							0.08298274057187882
ETKLQISEF	9	Unmodified	_ETKLQISEF_					0	0	0		ENST00000504592.5_2_4:102994878-102995350:+|nuORF	ENST00000504592.5_2_4:102994878-102995350:+|nuORF	ENST00000504592.5_2_4:102994878-102995350:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	364.9690856933594	3	365.529123	1093.56554	-0.15379	-5.6215E-05	-0.35713	-0.00013054	-0.51092	-0.00018676	365.5288587593967	28.137	0.5076	28.816	28.502	29.01	0.67857					13	9	2	0	0	0	0.71541	1	9588	9588		2.2828	0	1	2093600			13180	12822	9520	9596	12848	12848					0.022500020322468117
ETKLTMKQY	9	Unmodified	_ETKLTMKQY_					0	0	0			REV__ENST00000444362.2_1_1:1337058-1337334:+|nuORF	REV__ENST00000444362.2_1_1:1337058-1337334:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	380.58941650390625	3	381.202242	1140.5849	0.49915	0.00019028	-0.48266	-0.00018399	0.01649	6.286E-06	381.2021108916032	23.021	0.4513	23.021	22.673	23.125	0					13	8	2	0	0	0	0.73363	1	6122	6122		7.1017	0	1	1875300	+		13181	24834	9521	9597	12849	12849					0.0202263505150313
ETKPTSGKIF	10	Unmodified	_ETKPTSGKIF_					0	0	0			REV__ENST00000560834.1_1_15:44751212-44776450:+|nuORF	REV__ENST00000560834.1_1_15:44751212-44776450:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	554.6419067382812	2	554.305864	1106.59717	-1.0341	-0.00057322	0.50133	0.00027789	-0.53279	-0.00029533	554.3058579662236	40.994	0.50777	41.768	41.54	42.047	0.77451					12	9	2	0	0	0	0.75488	1	15184	15184		23.79	0	1	1766200	+		13182	26173	9522	9598	12850	12850					0.04813994786195508
ETKRALDFTD	10	Unmodified	_ETKRALDFTD_					0	0	0		ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-MSMS	A375_MHC_IP_R2	2	399.5947265625	3	399.203299	1194.58807	-0.31133	-0.00012428	-0.23105	-9.2236E-05	-0.54238	-0.00021652	399.20313355201876	40.992	0.45643	41.767	41.489	41.946	0.77451					17	8	3	0	0	0	0.70972	1	15193	15193		7.9454	1.315	1	3210500			13183	6559	9523	9599	12851	12851					-0.001443985701598649
ETKRALDFTD	10	Unmodified	_ETKRALDFTD_					0	0	0		ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	399.203299	1194.58807	-0.44209	-0.00017648	0.10419	4.1594E-05	-0.33789	-0.00013489	399.203319042239	41.783	0.51196	41.783	41.47	41.982	0	0.0082522	0.0001922	NaN	7.9454	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1486800			13184	6559	9523	9599							-0.001443985701598649
ETKRALDFTD	10	Unmodified	_ETKRALDFTD_					0	0	0		ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	399.203299	1194.58807	-0.31133	-0.00012428	-0.23105	-9.2236E-05	-0.54238	-0.00021652	399.20313355201876	40.992	0.45643	41.767	41.489	41.946	0.77451	-0.0082522	-0.00020929	NaN	7.9454	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3210500			13185	6559	9523	9599							-0.001443985701598649
ETKRQEQFY	9	Unmodified	_ETKRQEQFY_					0	0	0			REV__nc|ENSG00000080823|Q9UQ07-5|MOK	REV__nc|ENSG00000080823|Q9UQ07-5|MOK	MULTI-SECPEP	A375_MHC_IP_R1	1	409.6246337890625	3	410.20341	1227.5884	0.041796	1.7145E-05	-1.2558	-0.00051513	-1.214	-0.00049799	410.2028663250311	33.807	0.70593	33.807	33.547	34.253	0					18	13	2	0	0	0	0.7911	1	11231	11231		4.5289	0	1	2204000	+		13186	16758	9524	9600	12852	12852					-0.016289788502717784
ETKRRENM	8	Unmodified	_ETKRRENM_					0	0	0			REV__nc|ENSG00000156983|P55201-4|BRPF1	REV__nc|ENSG00000156983|P55201-4|BRPF1	MULTI-SECPEP	A375_MHC_IP_R1	1	1062.9298095703125	1	1063.5313	1062.52403	-0.41067	-0.00043676	-1.0558	-0.0011229	-1.4665	-0.0015597	1064.5320981255372	122.71	1.9201	122.71	121.62	123.54	0					51	37	2	0	0	0	0.972	1	45402	45402		8.5933	0	1	595690000	+		13187	20004	9525	9601	12853	12853					-0.004734572080906219
ETKSKRMK	8	Unmodified	_ETKSKRMK_					0	0	0		tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1	tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1	tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1	MSMS	A375_MHC_IP_R2	2	504.3030700683594	2	504.286951	1006.55935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.126	1	25.77	25.27	26.27	0.64368								0	0	0	0.16876	1	8358	8358		5.2307	0.90143	1				13188	29703	9526	9602	12854	12854					0.05633205319725221
ETKSLECLP	9	Unmodified	_ETKSLECLP_					0	0	0		nc|ENSG00000124587|Q13608-2|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	MULTI-SECPEP	A375_MHC_IP_R1	1	509.6473388671875	2	510.257525	1018.5005	-0.57134	-0.00029153	1.331	0.00067914	0.75963	0.00038761	510.2579659659663	33.032	0.40473	33.032	32.785	33.19	0					10	7	2	0	0	0	0.46045	1	10669	10669		29.082	13.833	1	1882100			13189	14577	9527	9603	12855	12855					-0.008013157652726477
ETKSLQAGYMM	11	Unmodified	_ETKSLQAGYMM_					0	0	0			REV__tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	REV__tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	629.7503662109375	2	629.793949	1257.57334	-0.70606	-0.00044467	-0.2217	-0.00013962	-0.92775	-0.00058429	629.7938234753695	134.58	0.45642	134.72	134.44	134.9	0.13901					15	8	3	0	0	0	0.72649	1	52900	52900		12.241	6.0349	1	6322700	+		13190	28877	9528	9604	12856	12856					-0.04513930034158875
ETKVIYHLD	9	Unmodified	_ETKVIYHLD_					0	0	0		ENSG00000004975|ENST00000005340|DVL2;ENST00000576949.1_1_17:7133875-7137617:-|nuORF	ENSG00000004975|ENST00000005340|DVL2	ENSG00000004975|ENST00000005340|DVL2	MULTI-MSMS	A375_MHC_IP_R2	2	372.92901611328125	3	373.201118	1116.58152	-0.046437	-1.733E-05	-0.43414	-0.00016202	-0.48057	-0.00017935	373.2009713040081	33.972	0.55622	34.724	34.45	35.006	0.75225					17	9	3	0	0	0	0.61998	1	12220	12220		9.544	1.5986	1	7339300			13191	877	9529	9605	12857	12857					0.027897082691197284
ETKVLLIVPGK	11	Unmodified	_ETKVLLIVPGK_					0	0	0			REV__tr|U7STZ4|U7STZ4_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dxsPE=3SV=1	REV__tr|U7STZ4|U7STZ4_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dxsPE=3SV=1	MSMS	A375_MHC_IP_R1	1	598.8610229492188	2	598.884281	1195.75401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.469	1	81.469	80.969	81.969	0								0	0	0	0.16297	1	29771	29771		3.2813	0.28607	1		+		13192	28521	9530	9606	12858	12858					0.16396279676519043
ETKVNEAVTQW	11	Unmodified	_ETKVNEAVTQW_					0	0	0			REV__ROBO1|p.N1088Sfs*50|1|0.03|ENSG00000169855|chr3:78635883-78635884|-/AGTGGCAGTGTATTGTGAAAGC|frameshift_variant	REV__ROBO1|p.N1088Sfs*50|1|0.03|ENSG00000169855|chr3:78635883-78635884|-/AGTGGCAGTGTATTGTGAAAGC|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	435.6632995605469	3	435.55422	1303.64083	-0.16011	-6.9735E-05	0.85757	0.00037352	0.69746	0.00030378	435.5545396191133	63.924	0.4058	63.924	63.735	64.141	0					15	7	3	0	0	0	0.99424	1	23063	23063		2.2527	0	1	1026700	+		13193	27892	9531	9607	12859	12859					0.0011555949265584786
ETLAIEGAQAF	11	Unmodified	_ETLAIEGAQAF_					0	0	0		nc|ENSG00000100031|P19440-2|GGT1;ENSG00000100031|ENST00000400382|GGT1	nc|ENSG00000100031|P19440-2|GGT1	nc|ENSG00000100031|P19440-2|GGT1	MULTI-MSMS	A375_MHC_IP_R2	2	574.6849365234375	2	575.292953	1148.57135	-0.64372	-0.00037033	-0.95329	-0.00054842	-1.597	-0.00091874	575.2923177957229	34.021	0.40513	34.774	34.55	34.955	0.75225					12	7	3	0	0	0	0.56199	1	12246	12246		26.268	0	1	4053100			13194	2105	9532	9608	12860	12860					0.0030110054387932905
ETLALPAPCV	10	Unmodified	_ETLALPAPCV_					0	0	0			REV__ENST00000509689.5_1_4:3447320-3449280:+|nuORF	REV__ENST00000509689.5_1_4:3447320-3449280:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	507.4427795410156	2	507.270435	1012.52632	-1.1258	-0.0005711	3.0621	0.0015533	1.9362	0.00098219	507.2712650037602	56.621	1.2234	57.371	56.54	57.763	0.75015					44	23	3	0	0	0	0.70552	1	21199	21199		16.942	0	1	6460000	+		13195	25596	9533	9609	12861	12861					0.02055578476995379
ETLCDISHF	9	Unmodified	_ETLCDISHF_					0	0	0		nc|ENSG00000105483|Q9Y2G2-3|CARD8;ENSG00000105483|ENST00000651546|CARD8;ENST00000518596.5_1_19:48737658-48744277:-|nuORF;ENST00000522051.5_1_19:48737658-48744277:-|nuORF;ENST00000517778.5_1_19:48737137-48744277:-|nuORF;nc|ENSG00000105483|Q9Y2G2-4|CARD8;ENST00000521092.5_1_19:48737658-48744277:-|nuORF	nc|ENSG00000105483|Q9Y2G2-3|CARD8	nc|ENSG00000105483|Q9Y2G2-3|CARD8	MULTI-SECPEP	A375_MHC_IP_R1	1	532.12744140625	2	532.739499	1063.46445	-0.45907	-0.00024457	0.35976	0.00019166	-0.099313	-5.2908E-05	532.7396615491225	42.693	0.60632	42.693	42.336	42.942	0					19	11	2	0	0	0	0.65246	1	14708	14708		15.847	4.2069	1	991800			13196	2609	9534	9610	12862	12862					-0.06474772942146956
ETLDFPRSW	9	Unmodified	_ETLDFPRSW_					0	0	0		ENSG00000052749|ENST00000370992|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;nc|ENSG00000052749|Q5JTH9-2|RRP12	ENSG00000052749|ENST00000370992|RRP12	ENSG00000052749|ENST00000370992|RRP12	MULTI-MSMS	A375_MHC_IP_R1	1	576.3928833007812	2	575.780013	1149.54547	-0.069378	-3.9946E-05	-0.91963	-0.0005295	-0.989	-0.00056945	575.7795885534473	88.589	0.56036	88.589	88.358	88.919	0					20	10	3	0	0	0	0.16945	1	32513	32513		40.239	12.61	1	3715000			13197	1240	9535	9611	12863	12863					-0.023317489077271603
ETLDFPRSW	9	Unmodified	_ETLDFPRSW_					0	0	0		ENSG00000052749|ENST00000370992|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;nc|ENSG00000052749|Q5JTH9-2|RRP12	ENSG00000052749|ENST00000370992|RRP12	ENSG00000052749|ENST00000370992|RRP12	MULTI-MSMS	A375_MHC_IP_R2	2	576.1792602539062	2	575.780013	1149.54547	-0.1157	-6.6617E-05	-0.7664	-0.00044128	-0.8821	-0.00050789	576.2815143903234	87.966	0.70953	88.698	88.266	88.976	0.7318					17	13	2	0	0	0	0.095851	1	33522	33522		51.415	18.63	1	3104200			13198	1240	9535	9611	12864	12864					-0.023317489077271603
ETLDREHLK	9	Unmodified	_ETLDREHLK_					0	0	0		nc|ENSG00000006607|O94887-3|FARP2;nc|ENSG00000006607|O94887-2|FARP2;ENSG00000006607|ENST00000264042|FARP2	nc|ENSG00000006607|O94887-3|FARP2	nc|ENSG00000006607|O94887-3|FARP2	MULTI-SECPEP	A375_MHC_IP_R1	1	571.203369140625	2	570.80402	1139.59349	0.22002	0.00012559	-0.7749	-0.00044232	-0.55488	-0.00031673	570.8036393681235	49.109	0.7092	49.109	48.831	49.54	0					30	13	3	0	0	0	0.58271	1	17317	17317		26.884	3.0939	1	11836000			13199	920	9536	9612	12865	12865					0.029273250123196703
ETLEEGWSY	9	Unmodified	_ETLEEGWSY_					0	0	0			REV__ENSG00000204351|ENST00000375394|SKIC2	REV__ENSG00000204351|ENST00000375394|SKIC2	MULTI-MSMS	A375_MHC_IP_R1	1	557.1903076171875	2	557.240386	1112.46622	-0.47516	-0.00026478	-0.12637	-7.0419E-05	-0.60153	-0.0003352	557.2401575567941	47.44	0.86118	47.44	47.159	48.02	0					46	16	4	0	0	0	0.65721	1	16801	16801		10.824	10.824	1	14449000	+		13200	22508	9537	9613	12866	12866					-0.0855144065251352
ETLERPWLE	9	Unmodified	_ETLERPWLE_					0	0	0			REV__ENSG00000233436|ENST00000422652|BTBD18	REV__ENSG00000233436|ENST00000422652|BTBD18	MULTI-SECPEP	A375_MHC_IP_R1	1	391.6280517578125	3	391.536389	1171.58734	0.1872	7.3297E-05	2.4627	0.00096423	2.6499	0.0010375	391.5376781844829	31.735	0.40701	31.735	31.514	31.921	0					9	7	2	0	0	0	0.75214	1	10251	10251		11.518	1.9739	1	1036800	+		13201	22748	9538	9614	12867	12867					0.008408067808204578
ETLGCRMPPF	10	Unmodified	_ETLGCRMPPF_					0	0	0			REV__ENSG00000134007|ENST00000256389|ADAM20	REV__ENSG00000134007|ENST00000256389|ADAM20	MSMS	A375_MHC_IP_R1	1	575.7297973632812	2	575.772819	1149.53109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.827	1	72.827	72.327	73.327	0								0	0	0	0.15332	1	26504	26504		10.074	2.1638	1		+		13202	18745	9539	9615	12868	12868					-0.03769860651868839
ETLHFDHAV	9	Unmodified	_ETLHFDHAV_					0	0	0		ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-SECPEP	A375_MHC_IP_R1	1	535.2260131835938	2	534.759081	1067.50361	-0.922	-0.00049305	-0.30245	-0.00016174	-1.2245	-0.00065479	534.7584980720919	37.969	0.81641	37.969	37.658	38.475	0					28	15	3	0	0	0	0.71541	1	12993	12993		7.2892	1.0834	1	5158100			13203	3897	9540	9616	12869	12869					-0.027443045962627366
ETLHTVALHK	10	Unmodified	_ETLHTVALHK_					0	0	0			REV__ENSG00000168612|ENST00000372523|ZSWIM1	REV__ENSG00000168612|ENST00000372523|ZSWIM1	MULTI-MSMS	A375_MHC_IP_R1	1	383.5890808105469	3	383.552262	1147.63496	0.29964	0.00011493	0.20932	8.0284E-05	0.50896	0.00019521	383.55230031993256	53.439	0.50786	53.439	53.199	53.707	0					21	9	3	0	0	0	0.69695	1	19142	19142		13.615	0.74226	1	5440600	+		13204	20871	9541	9617	12870	12870					0.06704505771654112
ETLIEYLTN	9	Unmodified	_ETLIEYLTN_					0	0	0			REV__nc|ENSG00000172915|Q8NFP9|NBEA	REV__nc|ENSG00000172915|Q8NFP9|NBEA	MULTI-SECPEP	A375_MHC_IP_R2	2	548.2078247070312	2	548.282054	1094.54956	-1.0843	-0.00059448	3.8512	0.0021115	2.7669	0.0015171	548.2831449140651	38.194	0.30831	38.969	38.739	39.047	0.77451					7	5	2	0	0	0	0.58271	1	14066	14066		20.454	3.3671	1	859680	+		13205	21180	9542	9618	12871	12871					0.006062957953190562
ETLKSKKKLTL	11	Unmodified	_ETLKSKKKLTL_					0	0	0			REV__nc|ENSG00000137474|Q13402-4|MYO7A;REV__nc|ENSG00000137474|Q13402-8|MYO7A	REV__nc|ENSG00000137474|Q13402-8|MYO7A	MULTI-MSMS	A375_MHC_IP_R1	1	645.31298828125	2	644.91357	1287.81259	-0.7893	-0.00050903	0.055513	3.5801E-05	-0.73378	-0.00047323	644.9134426246933	149.29	2.2747	149.29	147.73	150	0					279	78	5	0	0	0	0.73934	1	56827	56827		0	0	1	3156100	+		13206	27248;19009	9543	9619	12872	12872					0.18019336250995366
ETLKSKKKLTL	11	Unmodified	_ETLKSKKKLTL_					0	0	0			REV__nc|ENSG00000137474|Q13402-4|MYO7A;REV__nc|ENSG00000137474|Q13402-8|MYO7A	REV__nc|ENSG00000137474|Q13402-8|MYO7A	MULTI-MSMS	A375_MHC_IP_R1	1	1289.21923828125	1	1288.81986	1287.81259	-0.36813	-0.00047446	0.27456	0.00035386	-0.093573	-0.0001206	1288.8198456251964	149.42	1.8411	149.42	148	149.84	0					135	46	4	0	0	0	0.73934	2	56842	56842;57037		0	0	1	1127500	+		13207	27248;19009	9543	9619	12873;12874	12873					0.18019336250995366
ETLKSKKKLTL	11	Unmodified	_ETLKSKKKLTL_					0	0	0			REV__nc|ENSG00000137474|Q13402-4|MYO7A;REV__nc|ENSG00000137474|Q13402-8|MYO7A	REV__nc|ENSG00000137474|Q13402-8|MYO7A	MULTI-SECPEP	A375_MHC_IP_R1	1	645.3134155273438	2	644.91357	1287.81259	-0.7893	-0.00050903	0.055513	3.5801E-05	-0.73378	-0.00047323	644.9134426246933	149.29	2.2747	149.29	147.73	150	0					279	78	5	0	0	0	1.0015	1	56617	56617		0	0	1	3156100	+		13208	27248;19009	9543	9619	12875	12875					0.18019336250995366
ETLKVHLVTIN	11	Unmodified	_ETLKVHLVTIN_					0	0	0			REV__ENSG00000118985|ENST00000237853|ELL2	REV__ENSG00000118985|ENST00000237853|ELL2	MULTI-SECPEP	A375_MHC_IP_R1	1	422.9688720703125	3	422.918722	1265.73434	-0.15016	-6.3507E-05	0.49936	0.00021119	0.34919	0.00014768	422.9189345510782	19.546	0.25431	19.546	19.471	19.725	0					6	4	2	0	0	0	0.99916	1	4841	4841		1.1098	0	1	1018000	+		13209	18058	9544	9620	12876	12876					0.11209903665780985
ETLLCATLY	9	Carbamidomethyl (C)	_ETLLC(Carbamidomethyl (C))ATLY_	ETLLC(1)ATLY		ETLLC(60)ATLY		0	1	0		ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-MSMS	A375_MHC_IP_R1	1	542.6724853515625	2	542.273175	1082.5318	-0.78968	-0.00042822	0.061528	3.3365E-05	-0.72815	-0.00039486	542.273226437581	66.403	1.1187	66.403	65.717	66.836	0					31	21	2	0	0	0	0.060021	1	24002	24002		60.39	8.1212	1	8021000			13210	4478	9545	9621	12877	12877	29				-0.006167427311766005
ETLLCATLY	9	Carbamidomethyl (C)	_ETLLC(Carbamidomethyl (C))ATLY_					0	1	0		ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-MATCH	A375_MHC_IP_R2	2		2	542.273175	1082.5318	-0.98323	-0.00053318	-0.07697	-4.1739E-05	-1.0602	-0.00057492	542.2732209735708	65.561	0.81123	66.299	65.766	66.577	0.73811	-0.052183	-6.8186E-05	NaN	60.39	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8803700			13211	4478	9545	9621			29				-0.006167427311766005
ETLLDLIMK	9	Unmodified	_ETLLDLIMK_					0	0	0		RAB27B|p.R184Q|3|0.3|ENSG00000041353|chr18:54889307-54889307|G/A|missense_variant;ENSG00000041353|ENST00000262094|RAB27B	RAB27B|p.R184Q|3|0.3|ENSG00000041353|chr18:54889307-54889307|G/A|missense_variant	RAB27B|p.R184Q|3|0.3|ENSG00000041353|chr18:54889307-54889307|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	538.710205078125	2	538.307018	1074.59948	-0.4849	-0.00026102	1.1168	0.00060118	0.6319	0.00034015	538.3078068995288	125.81	1.4613	125.81	125.5	126.96	0					79	28	3	0	0	0	0.46038	1	48222	48222		21.747	4.8044	1	31492000			13212	1167	9546	9622	12878	12878					0.06516707199648408
ETLLESTEE	9	Unmodified	_ETLLESTEE_					0	0	0		TNFRSF1B|p.G442E|1|0.36|ENSG00000028137|chr1:12206959-12206959|G/A|missense_variant	TNFRSF1B|p.G442E|1|0.36|ENSG00000028137|chr1:12206959-12206959|G/A|missense_variant	TNFRSF1B|p.G442E|1|0.36|ENSG00000028137|chr1:12206959-12206959|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	525.6974487304688	2	525.745502	1049.47645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.651	1	81.395	80.895	81.895	0.74474								0	0	0	0.14905	1	30621	30621		23.148	0	1				13213	29368	9547	9623	12879	12879					-0.04630877717954718
ETLLVVVRRP	10	Unmodified	_ETLLVVVRRP_					0	0	0			REV__nc|ENSG00000165816|Q5GFL6-3|VWA2	REV__nc|ENSG00000165816|Q5GFL6-3|VWA2	MULTI-SECPEP	A375_MHC_IP_R1	1	393.92779541015625	3	394.583674	1180.72919	0.1984	7.8286E-05	0.15641	6.1715E-05	0.35481	0.00014	394.5836967831009	22.959	0.2509	22.959	22.773	23.024	0					7	4	2	0	0	0	0.94269	1	6181	6181		3.3196	0.24738	1	738960	+		13214	20627	9548	9624	12880	12880					0.14605644593802936
ETLLYKRIN	9	Unmodified	_ETLLYKRIN_					0	0	0			REV__nc|ENSG00000119231|Q96HI0-2|SENP5	REV__nc|ENSG00000119231|Q96HI0-2|SENP5	MULTI-SECPEP	A375_MHC_IP_R1	1	575.734619140625	2	575.334956	1148.65536	-0.33546	-0.000193	-0.15098	-8.6866E-05	-0.48644	-0.00027987	575.3344959377578	24.473	0.40182	24.473	24.347	24.749	0					9	7	2	0	0	0	0.71541	1	6968	6968		7.2892	0	1	4196200	+		13215	18064	9549	9625	12881	12881					0.0869767643148407
ETLMFCMRV	9	Unmodified	_ETLMFCMRV_					0	0	0		ENSG00000197872|ENST00000381323|CYRIA	ENSG00000197872|ENST00000381323|CYRIA	ENSG00000197872|ENST00000381323|CYRIA	MULTI-SECPEP	A375_MHC_IP_R1	1	565.662841796875	2	565.263773	1128.51299	-0.48549	-0.00027443	-1.163	-0.00065739	-1.6485	-0.00093182	565.2630647644725	36.247	0.50783	36.247	36.033	36.541	0					13	9	2	0	0	0	0.65246	1	12136	12136		21.747	0	1	3092800			13216	9203	9550	9626	12882	12882					-0.046123188982392094
ETLNFLQQL	9	Unmodified	_ETLNFLQQL_					0	0	0			REV__LRRN1|p.D89G|1|0.4|ENSG00000175928|chr3:3844907-3844907|A/G|missense_variant	REV__LRRN1|p.D89G|1|0.4|ENSG00000175928|chr3:3844907-3844907|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	553.6504516601562	2	553.298039	1104.58152	-0.5595	-0.00030957	-0.62278	-0.00034458	-1.1823	-0.00065415	553.2975020477031	34.775	0.30319	34.775	34.507	34.81	0					9	5	2	0	0	0	0.69507	1	11416	11416		19.257	19.257	1	4931500	+		13217	21375	9551	9627	12883	12883					0.033417082691585165
ETLNIYQNL	9	Unmodified	_ETLNIYQNL_					0	0	0		ENSG00000133256|ENST00000496514|PDE6B;nc|ENSG00000133256|P35913-2|PDE6B;nc|ENSG00000133256|P35913-3|PDE6B	ENSG00000133256|ENST00000496514|PDE6B	ENSG00000133256|ENST00000496514|PDE6B	MULTI-MSMS	A375_MHC_IP_R1	1	554.6874389648438	2	554.287671	1106.56079	-0.54358	-0.0003013	0.41178	0.00022824	-0.1318	-7.3057E-05	554.2874361152077	60.184	0.61008	60.184	59.854	60.464	0					19	11	2	0	0	0	0.091096	1	21689	21689		52.268	8.4101	1	2446600			13218	4498	9552	9628	12884	12884					0.011771178894605328
ETLNIYQNL	9	Unmodified	_ETLNIYQNL_					0	0	0		ENSG00000133256|ENST00000496514|PDE6B;nc|ENSG00000133256|P35913-2|PDE6B;nc|ENSG00000133256|P35913-3|PDE6B	ENSG00000133256|ENST00000496514|PDE6B	ENSG00000133256|ENST00000496514|PDE6B	MULTI-MSMS	A375_MHC_IP_R2	2	554.6867065429688	2	554.287671	1106.56079	-1.1776	-0.00065274	-1.8286	-0.0010135	-3.0062	-0.0016663	554.286033724694	59.412	0.60657	60.159	59.793	60.4	0.74714					18	11	2	0	0	0	0.047602	1	22496	22496		65.235	11.831	1	2824500			13219	4498	9552	9628	12885	12885					0.011771178894605328
ETLNNKEKNLN	11	Unmodified	_ETLNNKEKNLN_					0	0	0			REV__tr|U7SZM4|U7SZM4_FUSNUMetal-dependentcarboxypeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00798PE=3SV=1	REV__tr|U7SZM4|U7SZM4_FUSNUMetal-dependentcarboxypeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00798PE=3SV=1	MSMS	A375_MHC_IP_R1	1	439.60345458984375	3	439.565008	1315.67319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.798	1	19.798	19.298	20.298	0								0	0	0	0.16112	1	4990	4990		12.856	2.8397	1		+		13220	28653	9553	9629	12886	12886					0.027983468956790603
ETLNNVLSGNW	11	Unmodified	_ETLNNVLSGNW_					0	0	0		ENSG00000101306|ENST00000375985|MYLK2	ENSG00000101306|ENST00000375985|MYLK2	ENSG00000101306|ENST00000375985|MYLK2	MULTI-MSMS	A375_MHC_IP_R1	1	416.6065673828125	3	416.206932	1245.59897	0.0091919	3.8257E-06	-0.31346	-0.00013046	-0.30427	-0.00012664	416.2068345907411	23.886	0.456	23.886	23.687	24.143	0					12	8	2	0	0	0	0.72829	1	6707	6707		10.527	0.21224	1	4580700			13221	2278	9554	9630	12887	12887					-0.014009961958663553
ETLNPIVGSPV	11	Unmodified	_ETLNPIVGSPV_					0	0	0			REV__ENSG00000046774|ENST00000247452|MAGEC2	REV__ENSG00000046774|ENST00000247452|MAGEC2	MULTI-SECPEP	A375_MHC_IP_R2	2	375.95196533203125	3	375.876523	1124.60774	-0.050603	-1.902E-05	-0.40792	-0.00015333	-0.45852	-0.00017235	375.87637459555117	19.948	0.91285	20.558	20.349	21.262	0.61029					28	17	2	0	0	0	0.67995	1	6299	6299		20.871	0.2902	1	4526400	+		13222	16356	9555	9631	12888	12888					0.05041977440600931
ETLPRPHSTR	10	Unmodified	_ETLPRPHSTR_					0	0	0			REV__ENST00000290551.4_1_1:203274678-203274738:+|nuORF	REV__ENST00000290551.4_1_1:203274678-203274738:+|nuORF	MSMS	A375_MHC_IP_R1	1	597.2489624023438	2	597.322911	1192.63127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.48	1	131.48	130.98	131.98	0								0	0	0	0.15391	1	50689	50689		8.1555	4.2111	1		+		13223	23354	9556	9632	12889	12889					0.04265835997807699
ETLQEEDDSS	10	Unmodified	_ETLQEEDDSS_					0	0	0			REV__ENST00000530736.1_1_11:18115485-18127588:-|nuORF	REV__ENST00000530736.1_1_11:18115485-18127588:-|nuORF	MSMS	A375_MHC_IP_R1	1	576.6827392578125	2	576.73058	1151.44661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.111	1	52.111	51.611	52.611	0								0	0	0	0.15265	1	18520	18520		12.241	3.4953	1		+		13224	20700	9557	9633	12890	12890					-0.12305861453933176
ETLREHKFMG	10	Unmodified	_ETLREHKFMG_					0	0	0		ENST00000311936.7_1_12:25362125-25362311:-|nuORF	ENST00000311936.7_1_12:25362125-25362311:-|nuORF	ENST00000311936.7_1_12:25362125-25362311:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	416.94482421875	3	416.54489	1246.61284	0.16824	7.008E-05	-0.080907	-3.3701E-05	0.087334	3.6378E-05	416.5448566351136	27.458	0.6069	27.458	27.229	27.836	0					19	11	2	0	0	0	0.92227	1	8329	8329		5.0475	0.15051	1	2346200			13225	10634	9558	9634	12891	12891					-0.0006004196843605314
ETLREHKFMG	10	Unmodified	_ETLREHKFMG_					0	0	0		ENST00000311936.7_1_12:25362125-25362311:-|nuORF	ENST00000311936.7_1_12:25362125-25362311:-|nuORF	ENST00000311936.7_1_12:25362125-25362311:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	416.54489	1246.61284	-0.27674	-0.00011527	0.26835	0.00011178	-0.0083883	-3.4941E-06	416.54491043713927	26.846	0.61314	27.506	27.212	27.825	0.65992	0.024287	0.00030637	NaN	5.0475	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2786900			13226	10634	9558	9634							-0.0006004196843605314
ETLRLALEI	9	Unmodified	_ETLRLALEI_					0	0	0			REV__nc|ENSG00000115484|P50991-2|CCT4	REV__nc|ENSG00000115484|P50991-2|CCT4	MULTI-MSMS	A375_MHC_IP_R1	1	529.7158813476562	2	529.316232	1056.61791	-0.49283	-0.00026086	-0.024038	-1.2724E-05	-0.51686	-0.00027359	529.3161460681171	101.64	0.7084	101.64	101.24	101.95	0					27	13	3	0	0	0	0.077132	1	37350	37350		54.774	11.001	1	1914800	+		13227	17890	9559	9635	12892	12892					0.0918658516582127
ETLRLALEI	9	Unmodified	_ETLRLALEI_					0	0	0			REV__nc|ENSG00000115484|P50991-2|CCT4	REV__nc|ENSG00000115484|P50991-2|CCT4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	529.316232	1056.61791	-0.49283	-0.00026086	-0.024038	-1.2724E-05	-0.51686	-0.00027359	529.3161460681171	101.64	0.7084	101.64	101.24	101.95	0	0.19646	-3.434E-05	NaN	54.774	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1914800	+		13228	17890	9559	9635							0.0918658516582127
ETLRLALEI	9	Unmodified	_ETLRLALEI_					0	0	0			REV__nc|ENSG00000115484|P50991-2|CCT4	REV__nc|ENSG00000115484|P50991-2|CCT4	MULTI-MATCH	A375_MHC_IP_R2	2		2	529.316232	1056.61791	-0.38792	-0.00020533	0.037205	1.9693E-05	-0.35072	-0.00018564	529.8176694956136	100.48	0.51228	101.25	100.98	101.49	0.76278	-0.19646	3.0494E-05	NaN	54.774	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1874500	+		13229	17890	9559	9635							0.0918658516582127
ETLRLVQAF	9	Unmodified	_ETLRLVQAF_					0	0	0		ENSG00000123131|ENST00000379341|PRDX4;PRDX1|p.T183Nfs*5|1|0.15|ENSG00000117450|chr1:45511381-45511382|-/T|frameshift_variant;ENSG00000117450|ENST00000319248|PRDX1;ENST00000449329.2_1_9:12972844-12973225:-|nuORF	ENSG00000123131|ENST00000379341|PRDX4	ENSG00000123131|ENST00000379341|PRDX4	MULTI-SECPEP	A375_MHC_IP_R1	1	539.207763671875	2	538.808574	1075.60259	-0.87444	-0.00047116	-0.28822	-0.0001553	-1.1627	-0.00062645	538.8086511834591	86.3	0.35489	86.3	86.072	86.426	0					11	6	2	0	0	0	0.28216	1	31675	31675		34.402	6.7729	1	2015700			13230	3827	9560	9636	12893	12893					0.06781718368642942
ETLRLVQAF	9	Unmodified	_ETLRLVQAF_					0	0	0		ENSG00000123131|ENST00000379341|PRDX4;PRDX1|p.T183Nfs*5|1|0.15|ENSG00000117450|chr1:45511381-45511382|-/T|frameshift_variant;ENSG00000117450|ENST00000319248|PRDX1;ENST00000449329.2_1_9:12972844-12973225:-|nuORF	ENSG00000123131|ENST00000379341|PRDX4	ENSG00000123131|ENST00000379341|PRDX4	MULTI-SECPEP	A375_MHC_IP_R2	2	539.2077026367188	2	538.808574	1075.60259	-0.70615	-0.00038048	-0.32588	-0.00017559	-1.032	-0.00055607	538.808254471425	85.375	0.45827	86.111	85.78	86.239	0.73601					12	8	2	0	0	0	0.016309	1	32481	32481		92.653	38.821	1	2865200			13231	3827	9560	9636	12894	12894					0.06781718368642942
ETLRMLSLFLN	11	Unmodified	_ETLRMLSLFLN_					0	0	0			REV__DYTN|p.N395Rfs*70|1|0.09|ENSG00000232125|chr2:206663283-206663352|TTGATCTGCAAATAATCCCCTCCCTTTGGAACCTTTTCAGTTGAAGAATGGTCAACCTTGTTCCCCACAT/-|frameshift_variant	REV__DYTN|p.N395Rfs*70|1|0.09|ENSG00000232125|chr2:206663283-206663352|TTGATCTGCAAATAATCCCCTCCCTTTGGAACCTTTTCAGTTGAAGAATGGTCAACCTTGTTCCCCACAT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	445.9610900878906	3	446.247962	1335.72206	-0.67672	-0.00030198	1.9758	0.0008817	1.2991	0.00057972	446.24934869938807	23.299	0.20187	23.929	23.828	24.029	0.63015					5	3	2	0	0	0	0.99331	1	7509	7509		2.4348	2.0265	1	628330	+		13232	16050	9561	9637	12895	12895					0.06762543931085929
ETLRSKSLPV	10	Unmodified	_ETLRSKSLPV_					0	0	0		ENST00000528658.1_1_8:70673979-70744908:-|nuORF;ENST00000532388.5_1_8:70617264-70744908:-|nuORF;nc|ENSG00000137571|Q9H2Y9-3|SLCO5A1;nc|ENSG00000137571|Q9H2Y9-2|SLCO5A1;ENSG00000137571|ENST00000260126|SLCO5A1	ENST00000528658.1_1_8:70673979-70744908:-|nuORF	ENST00000528658.1_1_8:70673979-70744908:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	377.6241455078125	3	377.224034	1128.65027	0.17347	6.5437E-05	0.0027304	1.03E-06	0.1762	6.6467E-05	377.22400891308365	32.152	0.35677	32.889	32.704	33.061	0.73692					15	6	3	0	0	0	0.70174	1	11455	11455		11.518	1.2026	1	2663700			13233	4895	9562	9638	12896	12896					0.09109372568855179
ETLRYKVY	8	Unmodified	_ETLRYKVY_					0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	A375_MHC_IP_R2	2	536.7109375	2	536.295299	1070.57605	-0.99392	-0.00053304	-0.95598	-0.00051269	-1.9499	-0.0010457	536.295142377369	50.582	0.40477	51.336	51.108	51.513	0.75406					10	7	2	0	0	0	0.972	1	19039	19039		13.508	8.211	1	1152100	+		13234	16815	9563	9639	12897	12897					0.04358029477339187
ETLSDMFEL	9	Unmodified	_ETLSDMFEL_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MSMS	A375_MHC_IP_R1	1	542.7239379882812	2	542.74699	1083.47943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.11	1	72.11	71.61	72.61	0								0	0	0	0.14905	1	26225	26225		23.148	0	1				13235	8551	9564	9640	12898	12898					-0.058973258647938565
ETLSGFTLDH	10	Unmodified	_ETLSGFTLDH_					0	0	0			REV__nc|ENSG00000135336|Q9UBD5-2|ORC3	REV__nc|ENSG00000135336|Q9UBD5-2|ORC3	MULTI-SECPEP	A375_MHC_IP_R2	2	560.2144775390625	2	560.269478	1118.5244	-0.61498	-0.00034455	-0.68973	-0.00038643	-1.3047	-0.00073099	560.2695541342018	48.448	0.60389	49.205	48.779	49.383	0.75737					17	11	2	0	0	0	0.8125	1	18063	18063		13.042	0	1	1448100	+		13236	18844	9565	9641	12899	12899					-0.03011759007222281
ETLSHKDHFY	10	Unmodified	_ETLSHKDHFY_					0	0	0			REV__nc|ENSG00000159398|Q6NT32-4|CES5A	REV__nc|ENSG00000159398|Q6NT32-4|CES5A	MULTI-SECPEP	A375_MHC_IP_R2	2	426.3304748535156	3	426.20341	1275.5884	-0.24402	-0.000104	-0.38555	-0.00016432	-0.62957	-0.00026833	426.2032549956639	27.951	0.30506	28.63	28.452	28.757	0.67857					8	5	2	0	0	0	0.94269	1	9599	9599		3.3196	0	1	1325700	+		13237	27312	9566	9642	12900	12900					-0.03836978850290507
ETLSLSAKY	9	Unmodified	_ETLSLSAKY_					0	0	0			REV__ENST00000578492.5_1_17:62746826-62750158:-|nuORF	REV__ENST00000578492.5_1_17:62746826-62750158:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	506.99066162109375	2	506.27149	1010.52843	-0.76308	-0.00038633	-1.2147	-0.00061497	-1.9778	-0.0010013	506.2713105526978	39.598	0.25373	40.373	40.219	40.473	0.77451					6	4	2	0	0	0	0.76187	1	14628	14628		0.40072	0	1	545700	+		13238	26329	9567	9643	12901	12901					0.023583304864814636
ETLSPLREW	9	Unmodified	_ETLSPLREW_					0	0	0			REV__ENST00000525088.5_1_11:67202187-67202637:+|nuORF	REV__ENST00000525088.5_1_11:67202187-67202637:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	565.7214965820312	2	565.795663	1129.57677	-0.61229	-0.00034643	-2.5746	-0.0014567	-3.1869	-0.0018031	565.7937959288884	51.334	0.35524	52.086	51.915	52.27	0.75225					9	6	2	0	0	0	0.19747	1	19279	19279		38.176	13.502	1	679570	+		13239	25765	9568	9644	12902	12902					0.01716824126378924
ETLSSKKFL	9	Unmodified	_ETLSSKKFL_					0	0	0		ABCC9|p.E346K|1|0.18|ENSG00000069431|chr12:21910954-21910954|C/T|missense_variant	ABCC9|p.E346K|1|0.18|ENSG00000069431|chr12:21910954-21910954|C/T|missense_variant	ABCC9|p.E346K|1|0.18|ENSG00000069431|chr12:21910954-21910954|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	351.9375	3	351.53773	1051.59136	-0.33974	-0.00011943	0.35684	0.00012544	0.017097	6.0102E-06	351.5378196848448	27.924	0.55366	27.924	27.735	28.288	0					23	10	3	0	0	0	0.53748	1	8588	8588		28.495	28.495	1	3320800			13240	15	9569	9645	12903	12903					0.06762896274517516
ETLSSKKFL	9	Unmodified	_ETLSSKKFL_					0	0	0		ABCC9|p.E346K|1|0.18|ENSG00000069431|chr12:21910954-21910954|C/T|missense_variant	ABCC9|p.E346K|1|0.18|ENSG00000069431|chr12:21910954-21910954|C/T|missense_variant	ABCC9|p.E346K|1|0.18|ENSG00000069431|chr12:21910954-21910954|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	351.93756103515625	3	351.53773	1051.59136	-0.1819	-6.3945E-05	-0.38108	-0.00013396	-0.56298	-0.00019791	351.53759135886406	27.312	0.50967	27.99	27.741	28.251	0.67857					20	9	3	0	0	0	0.63327	1	9337	9337		17.443	17.443	1	3795700			13241	15	9569	9645	12904	12904					0.06762896274517516
ETLSTLCYA	9	Unmodified	_ETLSTLCYA_					0	0	0		KIF16B|p.R350C|1|0.45|ENSG00000089177|chr20:16504500-16504500|G/A|missense_variant	KIF16B|p.R350C|1|0.45|ENSG00000089177|chr20:16504500-16504500|G/A|missense_variant	KIF16B|p.R350C|1|0.45|ENSG00000089177|chr20:16504500-16504500|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	500.7075500488281	2	500.736425	999.458298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.477	1	83.22	82.72	83.72	0.74293								0	0	0	0.15283	1	31330	31330		16.942	1.0951	1				13242	14211	9570	9646	12905	12905					-0.041452911736541864
ETLTIVAANW	10	Unmodified	_ETLTIVAANW_					0	0	0			REV__ENST00000374721.7_1_10:35500449-35500728:+|nuORF	REV__ENST00000374721.7_1_10:35500449-35500728:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	559.6976318359375	2	559.298039	1116.58152	-0.82052	-0.00045892	-0.36784	-0.00020573	-1.1884	-0.00066465	559.2977928240771	28.203	1.2176	28.882	27.996	29.214	0.67857					40	23	2	0	0	0	0.50967	1	9641	9641		27.629	4.8925	1	3389100	+		13243	24112	9571	9647	12906	12906					0.027897082691197284
ETLTIVAANW	10	Unmodified	_ETLTIVAANW_					0	0	0			REV__ENST00000374721.7_1_10:35500449-35500728:+|nuORF	REV__ENST00000374721.7_1_10:35500449-35500728:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	559.298039	1116.58152	-0.82052	-0.00045892	-0.36784	-0.00020573	-1.1884	-0.00066465	559.2977928240771	28.203	1.2176	28.882	27.996	29.214	0.67857	0.052132	0.00011659	NaN	27.629	40	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3389100	+		13244	24112	9571	9647							0.027897082691197284
ETLWEQRSP	9	Unmodified	_ETLWEQRSP_					0	0	0		nc|ENSG00000119787|Q8NHH9-4|ATL2	nc|ENSG00000119787|Q8NHH9-4|ATL2	nc|ENSG00000119787|Q8NHH9-4|ATL2	MULTI-SECPEP	A375_MHC_IP_R1	1	383.27789306640625	3	382.524372	1144.55129	0.33661	0.00012876	0.46957	0.00017962	0.80618	0.00030838	382.52458282259505	61.732	0.35725	61.732	61.585	61.943	0					8	6	2	0	0	0	0.71541	1	22340	22340		7.609	0.50723	1	808250			13245	14566	9572	9648	12907	12907					-0.015206503960371265
ETLYLKALW	9	Unmodified	_ETLYLKALW_					0	0	0		tr|U7STN1|U7STN1_FUSNU23SrRNA(-C5)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01407PE=3SV=1	tr|U7STN1|U7STN1_FUSNU23SrRNA(-C5)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01407PE=3SV=1	tr|U7STN1|U7STN1_FUSNU23SrRNA(-C5)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01407PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	568.4749145507812	2	568.82115	1135.62775	0.044468	2.5294E-05	-1.0993	-0.00062529	-1.0548	-0.00059999	568.8211987984085	112.78	0.35577	112.78	112.59	112.94	0					9	6	2	0	0	0	0.60917	1	41287	41287		19.257	7.6167	1	1831300			13246	29708	9573	9649	12908	12908					0.06535773171231085
ETMFKKYW	8	Unmodified	_ETMFKKYW_					0	0	0			REV__GUCA1A|p.F156Lfs*2|1|0.1|ENSG00000048545|chr6:42179263-42179263|T/-|frameshift_variant	REV__GUCA1A|p.F156Lfs*2|1|0.1|ENSG00000048545|chr6:42179263-42179263|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	378.2680358886719	3	378.188044	1131.5423	-0.29928	-0.00011319	-0.25605	-9.6834E-05	-0.55533	-0.00021002	378.1878791253223	25.255	0.55894	25.898	25.619	26.178	0.64368					19	10	3	0	0	0	0.972	1	8480	8480		10.074	10.074	1	10117000	+		13247	16374	9574	9650	12909	12909					-0.018207152860895803
ETMIEVLKK	9	Unmodified	_ETMIEVLKK_					0	0	0		tr|U7T247|U7T247_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00467PE=4SV=1	tr|U7T247|U7T247_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00467PE=4SV=1	tr|U7T247|U7T247_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00467PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	363.62872314453125	3	364.210737	1089.61038	-0.30747	-0.00011198	0.96726	0.00035229	0.6598	0.00024031	364.2110960285822	19.28	0.25216	19.883	19.683	19.935	0.60308					6	4	2	0	0	0	0.58271	1	5876	5876		14.405	3.6059	1	623610			13248	29918	9575	9651	12910	12910					0.06916109573921858
ETMLGFSYF	9	Unmodified	_ETMLGFSYF_					0	0	0		ENSG00000136011|ENST00000388887|STAB2	ENSG00000136011|ENST00000388887|STAB2	ENSG00000136011|ENST00000388887|STAB2	MSMS	A375_MHC_IP_R2	2	547.6607666015625	2	547.746793	1093.47903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.981	1	24.611	24.111	25.111	0.63014								0	0	0	0.099728	1	7806	7806		42.095	13.013	1				13249	4740	9576	9652	12911	12911					-0.06396700793970922
ETMPQVRLP	9	Unmodified	_ETMPQVRLP_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-13|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-13|PDE4DIP	MULTI-SECPEP	A375_MHC_IP_R1	1	357.9488220214844	3	357.526948	1069.55902	-0.19643	-7.0228E-05	-0.64695	-0.0002313	-0.84338	-0.00030153	357.52681608740846	23.438	0.25562	23.438	23.278	23.533	0					7	4	2	0	0	0	0.73363	1	6458	6458		7.1017	0	1	1366400	+		13250	27380	9577	9653	12912	12912					0.02701785599856521
ETNDGAYQLM	10	Unmodified	_ETNDGAYQLM_					0	0	0		ENSG00000141540|ENST00000269346|TTYH2	ENSG00000141540|ENST00000269346|TTYH2	ENSG00000141540|ENST00000269346|TTYH2	MSMS	A375_MHC_IP_R1	1	571.1710205078125	2	571.245146	1140.47574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.833	1	68.833	68.333	69.333	0								0	0	0	0.1524	1	24969	24969		13.042	0.51092	1				13251	5251	9578	9654	12913	12913					-0.08887995638656321
ETNDGAYQLM	10	Unmodified	_ETNDGAYQLM_					0	0	0		ENSG00000141540|ENST00000269346|TTYH2	ENSG00000141540|ENST00000269346|TTYH2	ENSG00000141540|ENST00000269346|TTYH2	MSMS	A375_MHC_IP_R2	2	571.1715087890625	2	571.245146	1140.47574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.174	1	63.917	63.417	64.417	0.74263								0	0	0	0.14673	1	23950	23950		24.021	1.2843	1				13252	5251	9578	9654	12914	12914					-0.08887995638656321
ETNDGAYQLM	10	Unmodified	_ETNDGAYQLM_					0	0	0		ENSG00000141540|ENST00000269346|TTYH2	ENSG00000141540|ENST00000269346|TTYH2	ENSG00000141540|ENST00000269346|TTYH2	MSMS	A375_MHC_IP_R2	2	571.1707763671875	2	571.245146	1140.47574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.741	1	64.481	63.981	64.981	0.74022								0	0	0	0.14673	1	24169	24169		24.021	9.4389	1				13253	5251	9578	9654	12915	12915					-0.08887995638656321
ETNEQPCF	8	Unmodified	_ETNEQPCF_					0	0	0			REV__nc|ENSG00000165914|Q86TV6-2|TTC7B	REV__nc|ENSG00000165914|Q86TV6-2|TTC7B	MSMS	A375_MHC_IP_R1	1	484.1117248535156	2	484.194925	966.375297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.901	1	45.901	45.401	46.401	0								0	0	0	0.16876	1	16082	16082		16.942	1.0951	1		+		13254	20636	9579	9655	12916	12916					-0.10923607901634114
ETNFSNNFF	9	Unmodified	_ETNFSNNFF_					0	0	0		tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1	tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1	tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	374.2706604003906	3	373.829573	1118.46689	0.23525	8.7944E-05	3.064	0.0011454	3.2992	0.0012334	373.8295351430153	28.187	0.50402	28.187	27.987	28.491	0					19	9	4	0	0	0	0.76187	1	8637	8637		2.2828	0.63015	1	1832600			13255	30049	9580	9656	12917	12917					-0.08760601212816255
ETNHQCDEC	9	Unmodified	_ETNHQCDEC_					0	0	0			REV__LAMB4|p.N1301Mfs*46|1|0.33|ENSG00000091128|chr7:108052113-108052113|A/-|frameshift_variant	REV__LAMB4|p.N1301Mfs*46|1|0.33|ENSG00000091128|chr7:108052113-108052113|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	1077.9847412109375	1	1078.35643	1077.34916	0.3079	0.00033203	-1.4414	-0.0015544	-1.1335	-0.0012224	1078.356664724002	117.54	3.0994	117.54	115.27	118.37	0					101	60	3	0	0	0	0.78798	1	42647	42647		3.9444	3.4196	1	57837000	+		13256	16943	9581	9657	12918	12918					-0.18642245135424673
ETNKEPRY	8	Unmodified	_ETNKEPRY_					0	0	0		nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2	nc|ENSG00000119139|Q9UDY2-6|TJP2	nc|ENSG00000119139|Q9UDY2-6|TJP2	MULTI-SECPEP	A375_MHC_IP_R2	2	518.9563598632812	2	518.756538	1035.49852	-0.70677	-0.00036664	-0.3122	-0.00016195	-1.019	-0.00052859	519.2574823618124	31.893	0.19987	32.63	32.555	32.755	0.73692					5	3	2	0	0	0	0.96266	1	11320	11320		7.2892	0	1	793360			13257	14565	9582	9658	12919	12919					-0.017806084588528392
ETNPAPVSL	9	Unmodified	_ETNPAPVSL_					0	0	0			REV__chr20:46575685-46575767|129|12.29|0.18|6.13|-|2|SLC13A3,None|1	REV__chr20:46575685-46575767|129|12.29|0.18|6.13|-|2|SLC13A3,None|1	MULTI-MSMS	A375_MHC_IP_R2	2	464.6490478515625	2	464.242732	926.470912	-0.66937	-0.00031075	-0.85814	-0.00039839	-1.5275	-0.00070914	464.2417840600485	66.913	0.45718	67.65	67.393	67.85	0.73631					12	8	2	0	0	0	0.38603	1	25350	25350		25.399	0.72543	1	891640	+		13258	15742	9583	9659	12920	12920					0.004734882809088958
ETNPLFHAF	9	Unmodified	_ETNPLFHAF_					0	0	0		nc|ENSG00000008323|Q3KR16-2|PLEKHG6;ENSG00000008323|ENST00000684764|PLEKHG6	nc|ENSG00000008323|Q3KR16-2|PLEKHG6	nc|ENSG00000008323|Q3KR16-2|PLEKHG6	MULTI-MSMS	A375_MHC_IP_R2	2	538.163818359375	2	538.263999	1074.51345	-1.3616	-0.0007329	1.1176	0.00060158	-0.24395	-0.00013131	538.2648019627985	33.915	0.7079	34.667	34.196	34.904	0.75225					14	13	2	0	0	0	0.41409	1	12241	12241		24.021	9.1823	1	2432300			13259	959	9584	9660	12921	12921					-0.020831165908703042
ETNRLNEKL	9	Unmodified	_ETNRLNEKL_					0	0	0			REV__ENST00000489323.5_1_14:74495895-74513566:+|nuORF	REV__ENST00000489323.5_1_14:74495895-74513566:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	372.2771911621094	3	372.871772	1115.59349	0.21267	7.9297E-05	1.6322	0.00060859	1.8448	0.00068789	372.8725702147917	35.53	0.60794	36.294	36.03	36.638	0.76338					14	11	2	0	0	0	0.79713	1	12840	12840		1.9064	0.83491	1	1299200	+		13260	18080	9585	9661	12922	12922					0.040313250123290345
ETNSKPDCWRS	11	Unmodified	_ETNSKPDCWRS_					0	0	0		ENST00000534987.5_1_11:71779263-71780957:-|nuORF;ENST00000541719.5_2_11:71760532-71791371:-|nuORF	ENST00000534987.5_1_11:71779263-71780957:-|nuORF	ENST00000534987.5_1_11:71779263-71780957:-|nuORF	MSMS	A375_MHC_IP_R1	1	441.3283996582031	3	441.531309	1321.5721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.782	1	24.782	24.282	25.282	0								0	0	0	0.16232	1	7114	7114		5.5233	1.6774	1				13261	13219	9586	9662	12923	12923					-0.07582428078694647
ETNVDYSFF	9	Unmodified	_ETNVDYSFF_					0	0	0		nc|ENSG00000183853|Q96J84-3|KIRREL1;ENSG00000183853|ENST00000359209|KIRREL1;nc|ENSG00000183853|Q96J84-2|KIRREL1	nc|ENSG00000183853|Q96J84-3|KIRREL1	nc|ENSG00000183853|Q96J84-3|KIRREL1	MULTI-MSMS	A375_MHC_IP_R2	2	562.6986083984375	2	561.242929	1120.47131	-0.74265	-0.00041681	-0.07453	-4.183E-05	-0.81718	-0.00045864	561.2429082608494	96.813	1.4696	97.569	96.911	98.381	0.75586					82	28	5	0	0	0	0.62719	2	36581	36537;36581		13.508	1.8676	1	18706000			13262	8537	9587	9663	12924;12925	12925					-0.08411136789891316
ETNVEEEGF	9	Unmodified	_ETNVEEEGF_					0	0	0			REV__nc|ENSG00000159352|P55036-2|PSMD4	REV__nc|ENSG00000159352|P55036-2|PSMD4	MULTI-MSMS	A375_MHC_IP_R1	1	527.6641235351562	2	527.222194	1052.42983	-0.64372	-0.00033938	0.031107	1.64E-05	-0.61261	-0.00032298	527.2223504405147	39.98	0.76367	39.98	39.694	40.458	0					30	14	3	0	0	0	0.43185	1	13774	13774		23.148	0	1	7004800	+		13263	20115	9588	9664	12926	12926					-0.09428317549213716
ETNVEEEGF	9	Unmodified	_ETNVEEEGF_					0	0	0			REV__nc|ENSG00000159352|P55036-2|PSMD4	REV__nc|ENSG00000159352|P55036-2|PSMD4	MULTI-MSMS	A375_MHC_IP_R2	2	527.6636962890625	2	527.222194	1052.42983	-0.55119	-0.0002906	-0.17258	-9.099E-05	-0.72377	-0.00038159	527.2220740555897	39.397	0.76354	40.172	39.812	40.575	0.77451					30	14	3	0	0	0	0.35581	1	14566	14566		26.884	2.8631	1	11142000	+		13264	20115	9588	9664	12927	12927					-0.09428317549213716
ETNVEEEGF	9	Unmodified	_ETNVEEEGF_					0	0	0			REV__nc|ENSG00000159352|P55036-2|PSMD4	REV__nc|ENSG00000159352|P55036-2|PSMD4	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6216430664062	2	527.222194	1052.42983	-0.55119	-0.0002906	-0.17258	-9.099E-05	-0.72377	-0.00038159	527.2220740555897	39.397	0.76354	40.172	39.812	40.575	0.77451					30	14	3	0	0	0	0.52144	1	14530	14530		16.942	0	1	11142000	+		13265	20115	9588	9664	12928	12928					-0.09428317549213716
ETNWLGEKY	9	Unmodified	_ETNWLGEKY_					0	0	0			REV__ENST00000484988.2_1_1:67081779-67091584:+|nuORF	REV__ENST00000484988.2_1_1:67081779-67091584:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	571.1710205078125	2	570.272021	1138.52949	-0.22968	-0.00013098	-0.84936	-0.00048437	-1.079	-0.00061535	570.2720637768263	62.94	4.4834	62.94	62.403	66.887	0					270	87	5	0	0	0	0.58047	1	23806	23806		15.847	5.0233	1	148430000	+		13266	23087	9589	9665	12929	12929					-0.03423455144616128
ETPDIKLF	8	Unmodified	_ETPDIKLF_					0	0	0		ENST00000598807.1_1_19:58899504-58905010:+|nuORF;ENSG00000083845|ENST00000196551|RPS5;ENST00000599909.1_1_19:58899504-58899627:+|nuORF	ENST00000598807.1_1_19:58899504-58905010:+|nuORF	ENST00000598807.1_1_19:58899504-58905010:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	482.1633605957031	2	481.7633	961.512048	-0.57029	-0.00027474	0.29315	0.00014123	-0.27713	-0.00013351	481.7633223103967	86.304	0.70811	86.304	85.971	86.679	0					28	13	3	0	0	0	0.36021	1	31630	31630		54.774	8.7526	1	3872600			13267	1790	9590	9666	12930	12930					0.02975249320365947
ETPDIKLF	8	Unmodified	_ETPDIKLF_					0	0	0		ENST00000598807.1_1_19:58899504-58905010:+|nuORF;ENSG00000083845|ENST00000196551|RPS5;ENST00000599909.1_1_19:58899504-58899627:+|nuORF	ENST00000598807.1_1_19:58899504-58905010:+|nuORF	ENST00000598807.1_1_19:58899504-58905010:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	482.1630554199219	2	481.7633	961.512048	-0.40704	-0.0001961	-0.27721	-0.00013355	-0.68426	-0.00032965	481.76307286400015	85.528	0.91541	86.264	85.831	86.746	0.73601					29	17	2	0	0	0	0.57209	1	32506	32506		46.021	13.904	1	3680400			13268	1790	9590	9666	12931	12931					0.02975249320365947
ETPDILNEY	9	Unmodified	_ETPDILNEY_					0	0	0			REV__ENSG00000165660|ENST00000298492|ABRAXAS2	REV__ENSG00000165660|ENST00000298492|ABRAXAS2	MSMS	A375_MHC_IP_R2	2	547.1876220703125	2	547.256037	1092.49752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.708	1	37.479	36.979	37.979	0.7709								0	0	0	0.1535	1	13398	13398		15.847	1.0089	1		+		13269	20607	9591	9667	12932	12932					-0.04502867618407436
ETPEEREEW	9	Unmodified	_ETPEEREEW_					0	0	0		ENSG00000142208|ENST00000649815|AKT1;nc|ENSG00000142208|P31749-2|AKT1	ENSG00000142208|ENST00000649815|AKT1	ENSG00000142208|ENST00000649815|AKT1	MULTI-SECPEP	A375_MHC_IP_R2	2	402.96282958984375	3	402.175409	1203.5044	-0.30254	-0.00012168	0.41231	0.00016582	0.10976	4.4144E-05	402.51023045556354	23.405	0.252	24.035	23.928	24.18	0.63014					7	4	2	0	0	0	0.77834	1	7560	7560		5.2969	1.4206	1	1864700			13270	5296	9592	9668	12933	12933					-0.08921554737844417
ETPGGPNEHPA	11	Unmodified	_ETPGGPNEHPA_					0	0	0		ENST00000493087.5_1_12:32755237-32793464:+|nuORF;nc|ENSG00000139132|Q96M96|FGD4;ENSG00000139132|ENST00000534526|FGD4	ENST00000493087.5_1_12:32755237-32793464:+|nuORF	ENST00000493087.5_1_12:32755237-32793464:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	553.1898193359375	2	553.249077	1104.4836	-0.58185	-0.00032191	-0.21722	-0.00012018	-0.79908	-0.00044209	553.2488337182991	64.47	1.016	64.47	63.684	64.7	0					25	19	2	0	0	0	0.72565	1	23163	23163		13.042	0.51092	1	2189600			13271	5049	9593	9669	12934	12934					-0.06446100326843407
ETPKIVRKL	9	Unmodified	_ETPKIVRKL_					0	0	0		nc|ENSG00000172943|Q9UPP1-5|PHF8;nc|ENSG00000172943|Q9UPP1-4|PHF8;nc|ENSG00000172943|Q9UPP1-3|PHF8;ENSG00000172943|ENST00000338154|PHF8;nc|ENSG00000172943|Q9UPP1|PHF8	nc|ENSG00000172943|Q9UPP1-5|PHF8	nc|ENSG00000172943|Q9UPP1-5|PHF8	MULTI-SECPEP	A375_MHC_IP_R1	1	362.30084228515625	3	361.901003	1082.68118	0.11246	4.0701E-05	-0.6758	-0.00024457	-0.56334	-0.00020387	361.90075806919907	24.826	0.30531	24.826	24.647	24.953	0					12	5	3	0	0	0	0.048303	1	7147	7147		74.2	51.542	1	11007000			13272	7751	9594	9670	12935	12935					0.14314570673764138
ETPKSYKTV	9	Unmodified	_ETPKSYKTV_					0	0	0		CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;nc|ENSG00000167258|Q9NYV4-3|CDK12	CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant	CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	526.6958618164062	2	526.784764	1051.55498	-0.51506	-0.00027132	-0.33124	-0.00017449	-0.8463	-0.00044582	526.7846447938217	55.05	0.50824	55.05	54.822	55.33	0					13	9	2	0	0	0	0.38603	1	19734	19734		25.399	0	1	2107600			13273	351	9595	9671	12936	12936					0.03126019377805278
ETPLPSPPQG	10	Unmodified	_ETPLPSPPQG_					0	0	0		nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	MULTI-MSMS	A375_MHC_IP_R1	1	512.6620483398438	2	511.761289	1021.50803	-0.71312	-0.00036495	-0.9335	-0.00047773	-1.6466	-0.00084268	512.2621407782965	132.38	0.35551	132.38	132.23	132.59	0					9	6	2	0	0	0	0.63639	1	51063	51063		18.146	5.6148	1	3609200			13274	6875	9596	9672	12937	12937					-0.0018684017333043812
ETPQANEFD	9	Unmodified	_ETPQANEFD_					0	0	0			REV__ENST00000523288.5_1_8:130864395-130891707:-|nuORF	REV__ENST00000523288.5_1_8:130864395-130891707:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	526.4385986328125	2	525.722361	1049.43017	-0.5033	-0.00026459	-0.28239	-0.00014846	-0.78568	-0.00041305	525.7219721837856	31.403	0.40887	32.122	31.923	32.332	0.71856					13	7	2	0	0	0	0.76187	1	11029	11029		7.2892	3.3448	1	2046900	+		13275	19837	9597	9673	12938	12938					-0.09256897829368427
ETPRLEHIVAL	11	Unmodified	_ETPRLEHIVAL_					0	0	0			REV__ENSG00000197275|ENST00000336148|RAD54B	REV__ENSG00000197275|ENST00000336148|RAD54B	MSMS	A375_MHC_IP_R1	1	426.6190490722656	3	426.578588	1276.71394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.025	1	32.025	31.525	32.525	0								0	0	0	0.16182	1	10308	10308		9.2438	4.1963	1		+		13276	22274	9598	9674	12939	12939					0.08664733005957714
ETPRRDLLQ	9	Unmodified	_ETPRRDLLQ_					0	0	0			REV__ENSG00000148468|ENST00000378116|FAM171A1	REV__ENSG00000148468|ENST00000378116|FAM171A1	MULTI-SECPEP	A375_MHC_IP_R2	2	376.2763671875	3	376.543767	1126.60947	-0.088121	-3.3181E-05	-1.8175	-0.00068436	-1.9056	-0.00071754	376.54430649845966	19.857	0.35269	20.467	20.248	20.6	0.61029					11	6	3	0	0	0	0.77003	1	6151	6151		4.5289	0	1	537550	+		13277	19633	9599	9675	12940	12940					0.05123031249240739
ETPRRIRRQ	9	Unmodified	_ETPRRIRRQ_					0	0	0		ENST00000606367.1_1_6:31165433-31165721:-|nuORF	ENST00000606367.1_1_6:31165433-31165721:-|nuORF	ENST00000606367.1_1_6:31165433-31165721:-|nuORF	MSMS	A375_MHC_IP_R2	2	404.6117858886719	3	404.574172	1210.70069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.262	1	46.027	45.527	46.527	0.76519								0	0	0	0.15486	1	16914	16914		6.1918	0.32371	1				13278	13911	9600	9676	12941	12941					0.10376339737217677
ETPTFWKGDE	10	Unmodified	_ETPTFWKGDE_					0	0	0			REV__nc|ENSG00000079263|Q13342-3|SP140	REV__nc|ENSG00000079263|Q13342-3|SP140	MULTI-SECPEP	A375_MHC_IP_R1	1	403.2470703125	3	403.852266	1208.53497	-0.64929	-0.00026222	1.2184	0.00049206	0.56914	0.00022985	404.1871973279358	24.193	0.15306	24.193	24.092	24.245	0					4	2	2	0	0	0	0.94044	1	6777	6777		6.6304	1.3335	1	966350	+		13279	16726	9601	9677	12942	12942					-0.06095776352799476
ETPTFWKGDE	10	Unmodified	_ETPTFWKGDE_					0	0	0			REV__nc|ENSG00000079263|Q13342-3|SP140	REV__nc|ENSG00000079263|Q13342-3|SP140	MULTI-MATCH	A375_MHC_IP_R2	2		3	403.852266	1208.53497	-0.28148	-0.00011368	0.21357	8.6252E-05	-0.067907	-2.7424E-05	403.8522777717709	23.478	0.252	24.108	23.928	24.18	0.63014	-0.042632	-0.00032108	NaN	6.6304	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	934130	+		13280	16726	9601	9677							-0.06095776352799476
ETPVRKENR	9	Unmodified	_ETPVRKENR_					0	0	0			REV__ENSG00000118412|ENST00000551025|CASP8AP2	REV__ENSG00000118412|ENST00000551025|CASP8AP2	MULTI-SECPEP	A375_MHC_IP_R1	1	564.3590698242188	2	564.809636	1127.60472	-0.37266	-0.00021048	-2.3082	-0.0013037	-2.6808	-0.0015141	565.3100111564788	53.512	0.30415	53.512	53.403	53.707	0					7	5	2	0	0	0	0.62767	1	19141	19141		11.64	6.3434	1	805030	+		13281	18038	9602	9678	12943	12943					0.04602147106470511
ETQDEQQRF	9	Unmodified	_ETQDEQQRF_					0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	MULTI-SECPEP	A375_MHC_IP_R2	2	393.60699462890625	3	394.179153	1179.51563	-0.47878	-0.00018872	0.07593	2.993E-05	-0.40285	-0.00015879	394.1791726421862	19.964	0.76062	20.575	20.349	21.109	0.61029					32	14	3	0	0	0	0.71541	1	6190	6190		4.5289	2.7866	1	3624300	+		13282	21936	9603	9679	12944	12944					-0.06694732643723
ETQESAVKVE	10	Unmodified	_ETQESAVKVE_					0	0	0			REV__nc|ENSG00000241839|Q8TD55-2|PLEKHO2	REV__nc|ENSG00000241839|Q8TD55-2|PLEKHO2	MSMS	A375_MHC_IP_R1	1	373.61322021484375	3	373.855787	1118.54553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.689	1	29.689	29.189	30.189	0								0	0	0	0.14745	1	9338	9338		15.538	2.0198	1		+		13283	22792	9604	9680	12945	12945					-0.0089979369838602
ETQFKKILS	9	Unmodified	_ETQFKKILS_					0	0	0		ALDH2|p.G372S|1|0.08|ENSG00000111275|chr12:111798108-111798108|G/A|missense_variant	ALDH2|p.G372S|1|0.08|ENSG00000111275|chr12:111798108-111798108|G/A|missense_variant	ALDH2|p.G372S|1|0.08|ENSG00000111275|chr12:111798108-111798108|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	547.3541259765625	2	547.316232	1092.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.639	1	55.639	55.139	56.139	0								0	0	0	0.15142	1	19905	19905		19.257	1.1106	1				13284	101	9605	9681	12946	12946					0.0753058516584133
ETQGIFAVPQS	11	Unmodified	_ETQGIFAVPQS_					0	0	0			REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	MULTI-SECPEP	A375_MHC_IP_R2	2	393.26788330078125	3	392.868027	1175.58225	-0.012602	-4.9511E-06	-0.34814	-0.00013677	-0.36074	-0.00014172	392.8678195428933	47.317	0.66284	48.078	47.715	48.378	0.76128					12	8	2	0	0	0	0.99018	1	17746	17746		2.084	0	1	2852700	+		13285	19485	9606	9682	12947	12947					0.0014850291818220285
ETQGIFAVPQS	11	Unmodified	_ETQGIFAVPQS_					0	0	0			REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	MULTI-MATCH	A375_MHC_IP_R1	1		3	392.868027	1175.58225	0.4081	0.00016033	-1.1009	-0.00043251	-0.69281	-0.00027218	392.86751037204255	48.287	0.65697	48.287	47.819	48.476	0	0.10417	-0.00055493	NaN	2.084	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2136400	+		13286	19485	9606	9682							0.0014850291818220285
ETQGITDTY	9	Unmodified	_ETQGITDTY_					0	0	0		ENSG00000169359|ENST00000643144|SLC33A1	ENSG00000169359|ENST00000643144|SLC33A1	ENSG00000169359|ENST00000643144|SLC33A1	MULTI-MSMS	A375_MHC_IP_R1	1	515.2032470703125	2	514.232561	1026.45057	-0.19886	-0.00010226	-0.20175	-0.00010374	-0.40061	-0.000206	514.232339294178	45.405	0.7076	45.405	45.03	45.738	0					43	13	4	0	0	0	0.46038	1	15873	15873		21.747	0	1	11518000			13287	7402	9607	9683	12948	12948					-0.0615972716957458
ETQLPCPEDVR	11	Unmodified	_ETQLPCPEDVR_					0	0	0		ENSG00000157653|ENST00000374165|C9orf43	ENSG00000157653|ENST00000374165|C9orf43	ENSG00000157653|ENST00000374165|C9orf43	MULTI-SECPEP	A375_MHC_IP_R2	2	430.12200927734375	3	429.539693	1285.59725	-0.51833	-0.00022264	0.21612	9.2834E-05	-0.30221	-0.00012981	429.8746642072817	19.985	0.60734	20.596	20.044	20.651	0.61029					14	11	2	0	0	0	0.99331	1	6142	6142		0.36667	0.24381	1	629390			13288	6258	9608	9684	12949	12949					-0.034123732761372594
ETQLRFINM	9	Unmodified	_ETQLRFINM_					0	0	0			REV__ENSG00000144395|ENST00000389175|CCDC150	REV__ENSG00000144395|ENST00000389175|CCDC150	MULTI-SECPEP	A375_MHC_IP_R1	1	383.91888427734375	3	384.534103	1150.58048	0.050001	1.9227E-05	0.0097395	3.7452E-06	0.059741	2.2972E-05	384.5341921245378	36.515	0.45855	36.515	36.236	36.695	0					11	8	2	0	0	0	0.77003	1	12198	12198		4.5289	2.6225	1	719670	+		13289	19421	9609	9685	12950	12950					0.011211706285848777
ETQLRNELEY	10	Unmodified	_ETQLRNELEY_					0	0	0		ENSG00000198765|ENST00000369522|SYCP1	ENSG00000198765|ENST00000369522|SYCP1	ENSG00000198765|ENST00000369522|SYCP1	MULTI-SECPEP	A375_MHC_IP_R1	1	431.9413757324219	3	432.213975	1293.62009	-0.39602	-0.00017117	-0.1473	-6.3666E-05	-0.54332	-0.00023483	432.2139039234223	32.592	0.60499	32.592	32.282	32.887	0					19	11	2	0	0	0	0.89761	1	10612	10612		19.626	8.5607	1	3663000			13290	9321	9610	9686	12951	12951					-0.014970308870033477
ETQQSVKKL	9	Unmodified	_ETQQSVKKL_					0	0	0			REV__ENSG00000105185|ENST00000590247|PDCD5	REV__ENSG00000105185|ENST00000590247|PDCD5	MULTI-SECPEP	A375_MHC_IP_R1	1	353.57720947265625	3	354.204751	1059.59242	-0.13107	-4.6424E-05	1.6972	0.00060115	1.5661	0.00055473	354.53810386180703	19.717	0.40699	19.717	19.42	19.827	0					9	7	2	0	0	0	0.76187	1	4940	4940		7.609	0	1	526160	+		13291	17359	9611	9687	12952	12952					0.0650111064342127
ETQRCYRQ	8	Unmodified	_ETQRCYRQ_					0	0	0		nc|ENSG00000136813|Q5VYK3|ECPAS;ENSG00000136813|ENST00000684092|ECPAS;ENST00000465499.1_1_9:114128483-114132846:-|nuORF	nc|ENSG00000136813|Q5VYK3|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-SECPEP	A375_MHC_IP_R2	2	542.6528930664062	2	542.25364	1082.49273	-1.0088	-0.00054701	-0.17498	-9.4882E-05	-1.1837	-0.00064189	542.2533734876657	54.747	0.40713	55.498	55.219	55.626	0.75075					11	7	2	0	0	0	0.91495	1	20704	20704		24.674	0.65332	1	1874200			13292	4820	9612	9688	12953	12953					-0.04522030242173969
ETQRLKTAAE	10	Unmodified	_ETQRLKTAAE_					0	0	0		nc|ENSG00000155393|Q7Z4Q2-3|HEATR3;nc|ENSG00000155393|Q7Z4Q2-2|HEATR3;ENSG00000155393|ENST00000299192|HEATR3	nc|ENSG00000155393|Q7Z4Q2-3|HEATR3	nc|ENSG00000155393|Q7Z4Q2-3|HEATR3	MULTI-SECPEP	A375_MHC_IP_R2	2	383.2950744628906	3	382.875293	1145.60405	0.068719	2.6311E-05	-3.4902	-0.0013363	-3.4215	-0.00131	382.87382073653595	43.518	0.40336	44.291	44.13	44.533	0.7724					13	7	2	0	0	0	0.91442	1	16183	16183		10.315	8.2313	1	1644800			13293	6142	9613	9689	12954	12954					0.037073076667638816
ETQTQRRGWP	10	Unmodified	_ETQTQRRGWP_					0	0	0		ENST00000477976.5_1_1:880048-880436:-|nuORF	ENST00000477976.5_1_1:880048-880436:-|nuORF	ENST00000477976.5_1_1:880048-880436:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	419.6069030761719	3	420.214421	1257.62143	-0.093791	-3.9412E-05	1.2551	0.00052741	1.1613	0.000488	420.5493861691244	19.343	0.3335	19.343	19.238	19.571	0					9	6	2	0	0	0	0.91643	1	4838	4838		16.566	7.0219	1	8008900			13294	12453	9614	9690	12955	12955					0.002926479924326486
ETQTRKWW	8	Unmodified	_ETQTRKWW_					0	0	0		SPEN|p.G2197Dfs*159|1|0.09|ENSG00000065526|chr1:15932821-15932822|-/ACCAGAGG|frameshift_variant	SPEN|p.G2197Dfs*159|1|0.09|ENSG00000065526|chr1:15932821-15932822|-/ACCAGAGG|frameshift_variant	SPEN|p.G2197Dfs*159|1|0.09|ENSG00000065526|chr1:15932821-15932822|-/ACCAGAGG|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	567.1668701171875	2	567.788173	1133.56179	-0.25946	-0.00014732	0.44642	0.00025347	0.18696	0.00010615	567.7881725893587	35.981	0.50858	35.981	35.727	36.236	0					21	9	4	0	0	0	0.97144	1	12021	12021		2.3027	0	1	2446700			13295	29233	9615	9691	12956	12956					0.0003537704903919803
ETRATYVLEY	10	Unmodified	_ETRATYVLEY_					0	0	0			REV__nc|ENSG00000110171|O75382-4|TRIM3	REV__nc|ENSG00000110171|O75382-4|TRIM3	MULTI-SECPEP	A375_MHC_IP_R2	2	415.6422424316406	3	415.543432	1243.60847	0.037699	1.5666E-05	-0.79734	-0.00033133	-0.75964	-0.00031567	415.54251335917814	42.097	1.0724	42.87	42.247	43.32	0.77303					28	13	3	0	0	0	0.91556	1	15668	15668		5.7834	0	1	4401900	+		13296	17620	9616	9692	12957	12957					-0.003592279103031615
ETREHVEDIII	11	Unmodified	_ETREHVEDIII_					0	0	0			REV__ENSG00000156414|ENST00000409874|TDRD9	REV__ENSG00000156414|ENST00000409874|TDRD9	MULTI-SECPEP	A375_MHC_IP_R1	1	451.25640869140625	3	451.905141	1352.69359	-0.39975	-0.00018065	0.77634	0.00035083	0.37659	0.00017018	451.90559330592407	28.97	0.45516	28.97	28.694	29.149	0					11	8	2	0	0	0	0.99681	1	8909	8909		7.0371	5.2948	1	2028500	+		13297	19981	9617	9693	12958	12958					0.03135517555483602
ETRERWKRRRR	11	Unmodified	_ETRERWKRRRR_					0	0	0		ENST00000326402.8_2_11:92930946-92931072:-|nuORF	ENST00000326402.8_2_11:92930946-92931072:-|nuORF	ENST00000326402.8_2_11:92930946-92931072:-|nuORF	MSMS	A375_MHC_IP_R1	1	543.6532592773438	3	543.648734	1627.92437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.236	1	94.236	93.736	94.736	0								0	0	0	0.16358	1	34636	34636		0.073264	0.073264	1				13298	10731	9618	9694	12959	12959					0.13552628171305514
ETRGWLWW	8	Unmodified	_ETRGWLWW_					0	0	0		ENST00000429784.2_1_1:46910908-46911136:+|nuORF	ENST00000429784.2_1_1:46910908-46911136:+|nuORF	ENST00000429784.2_1_1:46910908-46911136:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	567.1777954101562	2	567.279983	1132.54541	-0.81547	-0.0004626	-0.90079	-0.000511	-1.7163	-0.0009736	567.2795758256585	25.255	0.25731	25.898	25.719	25.976	0.64368					7	4	2	0	0	0	0.92636	1	8436	8436		16.942	0	1	2562200			13299	11846	9619	9695	12960	12960					-0.015557041170495722
ETRIVLHVSC	10	Unmodified	_ETRIVLHVSC_					0	0	0			REV__ENST00000389063.2_1_5:112356126-112356255:+|nuORF	REV__ENST00000389063.2_1_5:112356126-112356255:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	385.5924377441406	3	386.209619	1155.60703	0.093389	3.6068E-05	4.0561	0.0015665	4.1495	0.0016026	386.5448862358887	31.152	0.30305	31.152	30.908	31.211	0					6	5	2	0	0	0	0.92227	1	9926	9926		2.8433	0	1	1273600	+		13300	24251	9620	9696	12961	12961					0.03544859519934107
ETRKEKVHRPR	11	Unmodified	_ETRKEKVHRPR_					0	0	0			REV__ENST00000240488.7_1_4:154265876-154271277:+|nuORF	REV__ENST00000240488.7_1_4:154265876-154271277:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	479.6936340332031	3	479.279536	1434.81678	-0.36383	-0.00017437	0.51671	0.00024765	0.15289	7.3275E-05	479.27961865294355	142.34	0.60941	142.37	142.03	142.64	0.030731					26	11	3	0	0	0	0.73881	1	55620	55620		0.50596	0.09769	1	2154400	+		13301	23095	9621	9697	12962	12962					0.11676238517247839
ETRKNRWNVY	10	Unmodified	_ETRKNRWNVY_					0	0	0			REV__ENST00000486530.1_1_3:148847510-148871436:+|nuORF	REV__ENST00000486530.1_1_3:148847510-148871436:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	455.9806823730469	3	455.905587	1364.69493	-0.56955	-0.00025966	-0.9201	-0.00041948	-1.4896	-0.00067914	456.2395901990797	21.994	0.45897	22.614	22.285	22.744	0.61932					15	8	2	0	0	0	0.71881	1	6846	6846		3.8763	1.033	1	1899400	+		13302	20408	9622	9698	12963	12963					0.027171964349008704
ETRKSYPDQ	9	Unmodified	_ETRKSYPDQ_					0	0	0		ENSG00000188779|ENST00000380035|SKOR1;nc|ENSG00000188779|P84550-3|SKOR1;nc|ENSG00000188779|P84550-2|SKOR1	ENSG00000188779|ENST00000380035|SKOR1	ENSG00000188779|ENST00000380035|SKOR1	MULTI-SECPEP	A375_MHC_IP_R1	1	374.6373291015625	3	375.184127	1122.53055	0.37031	0.00013894	0.30527	0.00011453	0.67558	0.00025347	375.1839190732717	63.529	0.25711	63.529	63.427	63.684	0					6	4	2	0	0	0	0.80516	1	22980	22980		2.2828	0.95324	1	435900			13303	8934	9623	9699	12964	12964					-0.02581240775725746
ETRLLLLKNL	10	Unmodified	_ETRLLLLKNL_					0	0	0		nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	MULTI-MSMS	A375_MHC_IP_R2	2	404.9510803222656	3	404.927329	1211.76016	-0.2749	-0.00011131	-0.23814	-9.6428E-05	-0.51303	-0.00020774	404.9271874936997	19.297	0.65831	19.9	19.733	20.392	0.60308					20	12	2	0	0	0	0.72321	1	5849	5849		1.9064	0.57673	1	1089500			13304	1064	9624	9700	12965	12965					0.16274797908045002
ETRPLLDV	8	Unmodified	_ETRPLLDV_					0	0	0			REV__nc|ENSG00000175216|Q14008-2|CKAP5	REV__nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	A375_MHC_IP_R2	2	471.66876220703125	2	471.766374	941.518196	-0.43219	-0.00020389	0.66385	0.00031318	0.23167	0.00010929	471.76657527352876	93.655	0.5574	94.4	94.16	94.717	0.74474					17	10	2	0	0	0	0.75322	1	35521	35521		19.439	2.4967	1	1108700	+		13305	21331	9625	9701	12966	12966					0.045097675518945834
ETRQWQDVESL	11	Unmodified	_ETRQWQDVESL_					0	0	0		ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	MULTI-SECPEP	A375_MHC_IP_R1	1	464.68450927734375	3	464.224762	1389.65246	-0.021686	-1.0067E-05	1.2642	0.00058686	1.2425	0.00057679	464.22525183412785	70.251	0.40854	70.251	69.983	70.392	0					10	7	2	0	0	0	0.99883	1	25451	25451		0.40827	0	1	884390			13306	8163	9626	9702	12967	12967					-0.02678243483978804
ETRRGRKIY	9	Unmodified	_ETRRGRKIY_					0	0	0		tr|U7T0Z2|U7T0Z2_FUSNUS4domain-containingproteinYaaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00746PE=4SV=1	tr|U7T0Z2|U7T0Z2_FUSNUS4domain-containingproteinYaaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00746PE=4SV=1	tr|U7T0Z2|U7T0Z2_FUSNUS4domain-containingproteinYaaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00746PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	393.25787353515625	3	393.563273	1177.66799	0.045314	1.7834E-05	2.3509	0.00092522	2.3962	0.00094306	393.89812575452015	19.976	0.45539	19.976	19.725	20.18	0					11	8	2	0	0	0	0.77834	1	5081	5081		5.2969	2.5617	1	631960			13307	29895	9627	9703	12968	12968					0.08626132614381277
ETRRLEQRLS	10	Unmodified	_ETRRLEQRLS_					0	0	0			REV__nc|ENSG00000143776|Q5VT25-4|CDC42BPA	REV__nc|ENSG00000143776|Q5VT25-4|CDC42BPA	MULTI-MSMS	A375_MHC_IP_R1	1	644.75927734375	2	644.360025	1286.7055	-0.68149	-0.00043913	0.60582	0.00039037	-0.07567	-4.8759E-05	644.3599266955786	130.92	2.3287	130.92	130.41	132.74	0					144	45	5	0	0	0	0.7154	1	50843	50843		5.7319	0.83484	1	92059000	+		13308	19386	9628	9704	12969	12969					0.0736117908934375
ETRRRRRG	8	Unmodified	_ETRRRRRG_					0	0	0			REV__ENST00000494373.1_1_2:54014190-54014463:+|nuORF	REV__ENST00000494373.1_1_2:54014190-54014463:+|nuORF	MSMS	A375_MHC_IP_R2	2	362.61712646484375	3	362.883228	1085.62786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.385	1	65.125	64.625	65.625	0.74022								0	0	0	0.16876	1	24411	24411		1.6526	0.58116	1		+		13309	25435	9629	9705	12970	12970					0.08846630734433347
ETRTFTAAGY	10	Unmodified	_ETRTFTAAGY_					0	0	0			REV__nc|ENSG00000126838|P20742-2|PZP	REV__nc|ENSG00000126838|P20742-2|PZP	MULTI-SECPEP	A375_MHC_IP_R1	1	559.2046508789062	2	558.769645	1115.52474	-0.38237	-0.00021366	0.79472	0.00044406	0.41235	0.00023041	559.2711157676127	53.802	0.60857	53.802	53.505	54.113	0					20	11	3	0	0	0	0.70528	1	19252	19252		15.248	0	1	1743100	+		13310	18400	9630	9706	12971	12971					-0.028403392873769917
ETRYKKERV	9	Unmodified	_ETRYKKERV_					0	0	0			REV__ENST00000498777.5_1_7:56132001-56141950:+|nuORF	REV__ENST00000498777.5_1_7:56132001-56141950:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	403.70526123046875	3	403.56305	1207.66732	-0.3184	-0.00012849	0.45796	0.00018482	0.13957	5.6324E-05	403.56296637019597	35.183	0.509	35.183	34.963	35.472	0					16	9	3	0	0	0	0.6656	1	11612	11612		14.405	8.171	1	1811500	+		13311	18481	9631	9707	12972	12972					0.07179293174635859
ETSEDEKTI	9	Unmodified	_ETSEDEKTI_					0	0	0			REV__ENSG00000070950|ENST00000264926|RAD18	REV__ENSG00000070950|ENST00000264926|RAD18	MSMS	A375_MHC_IP_R2	2	526.176513671875	2	526.243126	1050.4717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.15	1	110.88	110.38	111.38	0.73692								0	0	0	0.15486	1	41554	41554		12.532	0.89125	1		+		13312	16583	9632	9708	12973	12973					-0.051517618607022087
ETSEPALQRL	10	Unmodified	_ETSEPALQRL_					0	0	0		ENSG00000089558|ENST00000264661|KCNH4	ENSG00000089558|ENST00000264661|KCNH4	ENSG00000089558|ENST00000264661|KCNH4	MULTI-SECPEP	A375_MHC_IP_R1	1	572.2377319335938	2	572.303852	1142.59315	-0.17466	-9.9959E-05	0.41951	0.00024009	0.24485	0.00014013	572.3039897629828	72.888	0.45579	72.888	72.524	72.98	0					11	8	2	0	0	0	0.83355	1	26548	26548		12.241	0	1	945420			13313	1928	9633	9709	12974	12974					0.02755905292474381
ETSERQTE	8	Unmodified	_ETSERQTE_					0	0	0			REV__nc|ENSG00000100583|Q9P1V8-2|SAMD15	REV__nc|ENSG00000100583|Q9P1V8-2|SAMD15	MSMS	A375_MHC_IP_R1	1	490.13287353515625	2	490.219985	978.425418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.08	1	135.08	134.58	135.58	0								0	0	0	0.16876	1	52088	52088		4.756	0.42677	1		+		13314	17104	9634	9710	12975	12975					-0.06465781972144669
ETSGLLTDPY	10	Unmodified	_ETSGLLTDPY_					0	0	0			REV__nc|ENSG00000171385|Q9UK17-2|KCND3	REV__nc|ENSG00000171385|Q9UK17-2|KCND3	MSMS	A375_MHC_IP_R2	2	548.1948852539062	2	548.263862	1094.51317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.567	1	58.316	57.816	58.816	0.74894								0	0	0	0.14179	1	21769	21769		29.082	8.628	1		+		13315	21062	9635	9711	12976	12976					-0.030305811013704442
ETSGLLTDPY	10	Unmodified	_ETSGLLTDPY_					0	0	0			REV__nc|ENSG00000171385|Q9UK17-2|KCND3	REV__nc|ENSG00000171385|Q9UK17-2|KCND3	MSMS	A375_MHC_IP_R2	2	548.213134765625	2	548.263862	1094.51317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.815	1	58.564	58.064	59.064	0.74894								0	0	0	0.14673	1	21864	21864		24.021	3.5669	1		+		13316	21062	9635	9711	12977	12977					-0.030305811013704442
ETSGSRVLLNA	11	Unmodified	_ETSGSRVLLNA_					0	0	0			REV__ENSG00000149499|ENST00000394773|EML3	REV__ENSG00000149499|ENST00000394773|EML3	MULTI-SECPEP	A375_MHC_IP_R1	1	382.6083984375	3	382.875293	1145.60405	0.37203	0.00014244	1.2468	0.00047737	1.6188	0.00061981	383.20961433102366	35.038	0.30548	35.038	34.81	35.116	0					7	5	2	0	0	0	0.98748	1	11519	11519		4.4062	0	1	1778100	+		13317	19683	9636	9712	12978	12978					0.03707307666786619
ETSIWKDIQY	10	Unmodified	_ETSIWKDIQY_					0	0	0		nc|ENSG00000134207|Q5T7P8-2|SYT6;ENSG00000134207|ENST00000610222|SYT6	nc|ENSG00000134207|Q5T7P8-2|SYT6	nc|ENSG00000134207|Q5T7P8-2|SYT6	MULTI-SECPEP	A375_MHC_IP_R1	1	642.2160034179688	2	641.819335	1281.62412	-0.46219	-0.00029664	0.43182	0.00027715	-0.030369	-1.9491E-05	642.3218083993659	56	0.76262	56	55.584	56.347	0					45	14	4	0	0	0	0.92832	1	20115	20115		13.906	8.1742	1	5273300			13318	4556	9637	9713	12979	12979					-0.00542941393291585
ETSLDPKNW	9	Unmodified	_ETSLDPKNW_					0	0	0			REV__ENSG00000077063|ENST00000160373|CTTNBP2	REV__ENSG00000077063|ENST00000160373|CTTNBP2	MULTI-MSMS	A375_MHC_IP_R2	2	546.2343139648438	2	545.264196	1088.51384	-1.3114	-0.00071505	0.01811	9.8745E-06	-1.2933	-0.00070517	545.2642575132039	53.576	1.1264	54.327	53.688	54.815	0.75105					60	21	4	0	0	0	0.44024	1	20160	20160		22.736	0.078198	1	43172000	+		13319	16686	9638	9714	12980	12980					-0.026877416616798655
ETSNPFTLTY	10	Unmodified	_ETSNPFTLTY_					0	0	0			REV__nc|ENSG00000091879|O15123-2|ANGPT2	REV__nc|ENSG00000091879|O15123-2|ANGPT2	MULTI-MSMS	A375_MHC_IP_R2	2	586.6923217773438	2	586.777136	1171.53972	-0.49034	-0.00028772	0.61639	0.00036168	0.12605	7.3964E-05	586.7776273189437	63.783	1.1693	64.523	63.885	65.054	0.74023					52	22	4	0	0	0	0.57505	1	24359	24359		22.736	5.6497	1	17360000	+		13320	16959	9639	9715	12981	12981					-0.0391889221002657
ETSPALNEY	9	Unmodified	_ETSPALNEY_					0	0	0			REV__KCNK16|p.G112E|1|0.15|ENSG00000095981|chr6:39317946-39317946|C/T|missense_variant	REV__KCNK16|p.G112E|1|0.15|ENSG00000095981|chr6:39317946-39317946|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	512.70068359375	2	512.235104	1022.45566	-0.7947	-0.00040707	-0.24807	-0.00012707	-1.0428	-0.00053414	512.235104694968	39.587	0.50866	40.362	40.067	40.575	0.77451					15	9	2	0	0	0	0.25276	1	14588	14588		34.102	3.8776	1	2255500	+		13321	26830	9640	9716	12982	12982					-0.05467423306947694
ETSPLLSRAL	10	Unmodified	_ETSPLLSRAL_					0	0	0			REV__ENSG00000188878|ENST00000636174|FBF1	REV__ENSG00000188878|ENST00000636174|FBF1	MULTI-SECPEP	A375_MHC_IP_R2	2	362.2453918457031	3	362.876634	1085.60807	-0.21322	-7.7373E-05	0.59579	0.0002162	0.38257	0.00013883	362.8768889076256	27.036	0.46091	27.715	27.484	27.945	0.67818					13	8	2	0	0	0	0.91556	1	9289	9289		3.3196	0.24738	1	1708100	+		13322	22121	9641	9717	12983	12983					0.06869397160471635
ETSRVENLY	9	Unmodified	_ETSRVENLY_					0	0	0			REV__ENSG00000135966|ENST00000393359|TGFBRAP1	REV__ENSG00000135966|ENST00000393359|TGFBRAP1	MULTI-MSMS	A375_MHC_IP_R1	1	555.7067260742188	2	555.774928	1109.5353	-0.49703	-0.00027624	0.22818	0.00012682	-0.26885	-0.00014942	555.7749581317008	38.621	0.4613	38.621	38.268	38.73	0					15	8	3	0	0	0	0.41409	1	13070	13070		24.021	1.2843	1	5643600	+		13323	18904	9642	9718	12984	12984					-0.015083566329394671
ETSSHFHYI	9	Unmodified	_ETSSHFHYI_					0	0	0			REV__ENSG00000205710|ENST00000381365|C17orf107	REV__ENSG00000205710|ENST00000381365|C17orf107	MULTI-MSMS	A375_MHC_IP_R1	1	561.1552124023438	2	560.756538	1119.49852	-0.55158	-0.0003093	-0.6951	-0.00038978	-1.2467	-0.00069908	560.7563208413283	64.967	1.1208	64.967	64.495	65.616	0					20	13	2	0	0	0	0.25276	1	23522	23522		34.102	5.6156	1	3542900	+		13324	22579	9643	9719	12985	12985					-0.05644608458851508
ETSVDGFAFY	10	Unmodified	_ETSVDGFAFY_					0	0	0			REV__tr|U7SJ54|U7SJ54_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02095PE=3SV=1	REV__tr|U7SJ54|U7SJ54_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02095PE=3SV=1	MSMS	A375_MHC_IP_R2	2	568.2290649414062	2	568.250754	1134.48696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.161	1	56.911	56.411	57.411	0.75015								0	0	0	0.15105	1	21223	21223		15.847	6.4641	1		+		13325	28225	9644	9720	12986	12986					-0.07490850272847638
ETSVRSYED	9	Unmodified	_ETSVRSYED_					0	0	0		ENSG00000174576|ENST00000311034|NPAS4	ENSG00000174576|ENST00000311034|NPAS4	ENSG00000174576|ENST00000311034|NPAS4	MULTI-MSMS	A375_MHC_IP_R1	1	543.6404418945312	2	543.240918	1084.46728	-0.65543	-0.00035606	0.10022	5.4445E-05	-0.55521	-0.00030161	543.2408147548384	28.243	0.75804	28.243	27.987	28.745	0					32	14	3	0	0	0	0.38603	1	8717	8717		25.399	0.40835	1	23358000			13326	7892	9645	9721	12987	12987					-0.07157226283607088
ETSYVLNSPY	10	Unmodified	_ETSYVLNSPY_					0	0	0			REV__ENSG00000186980|ENST00000334160|KRTAP23-1	REV__ENSG00000186980|ENST00000334160|KRTAP23-1	MULTI-MSMS	A375_MHC_IP_R2	2	586.6904296875	2	586.777136	1171.53972	-0.78527	-0.00046078	2.1439	0.001258	1.3586	0.00079722	586.7790493850373	49.29	0.45489	50.047	49.741	50.196	0.75737					11	8	2	0	0	0	0.53946	1	18407	18407		25.399	2.2509	1	1219900	+		13327	22002	9646	9722	12988	12988					-0.03918892210049307
ETTFLVDKY	9	Unmodified	_ETTFLVDKY_					0	0	0		ENSG00000095139|ENST00000264028|ARCN1;nc|ENSG00000095139|P48444-2|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	MULTI-MSMS	A375_MHC_IP_R1	1	558.6842041015625	2	558.284597	1114.55464	-0.65708	-0.00036684	0.29958	0.00016725	-0.3575	-0.00019959	558.2847418640935	65.759	0.60997	65.759	65.462	66.072	0					26	11	3	0	0	0	0.0023519	1	23790	23790		140.63	81.954	1	8696700			13328	2036	9647	9723	12989	12989					0.0019459965797068435
ETTFLVDKY	9	Unmodified	_ETTFLVDKY_					0	0	0		ENSG00000095139|ENST00000264028|ARCN1;nc|ENSG00000095139|P48444-2|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	MULTI-SECPEP	A375_MHC_IP_R2	2	558.6842041015625	2	558.284597	1114.55464	-0.76252	-0.0004257	0.20122	0.00011234	-0.5613	-0.00031337	558.2846369132625	64.996	0.65899	65.734	65.41	66.069	0.73812					28	11	3	0	0	0	0.078412	1	24648	24648		90.135	54.008	1	12830000			13329	2036	9647	9723	12990	12990					0.0019459965797068435
ETTHFRDSS	9	Unmodified	_ETTHFRDSS_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-SECPEP	A375_MHC_IP_R2	2	540.2035522460938	2	540.241252	1078.46795	-0.87303	-0.00047164	-0.1242	-6.7097E-05	-0.99722	-0.00053874	540.2411811993945	30.822	0.55492	31.541	31.266	31.821	0.71857					14	10	2	0	0	0	0.78348	1	10916	10916		4.3292	0	1	1977600			13330	9505	9648	9724	12991	12991					-0.06814386843916509
ETTHFRDSS	9	Unmodified	_ETTHFRDSS_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-MATCH	A375_MHC_IP_R1	1		2	540.241252	1078.46795	-0.63971	-0.0003456	0.69396	0.00037491	0.054256	2.9311E-05	540.2417066822784	31.486	0.50704	31.486	31.16	31.667	0	-0.027451	0.00048703	NaN	4.3292	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1187100			13331	9505	9648	9724							-0.06814386843916509
ETTIYINEQNL	11	Unmodified	_ETTIYINEQNL_					0	0	0			REV__GHR|p.D564N|1|0.13|ENSG00000112964|chr5:42719197-42719197|G/A|missense_variant	REV__GHR|p.D564N|1|0.13|ENSG00000112964|chr5:42719197-42719197|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	669.4235229492188	2	669.332807	1336.65106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.718	1	89.45	88.95	89.95	0.7318								0	0	0	0.16265	1	33763	33763		4.897	0.70751	1		+		13332	26680	9649	9725	12992	12992					-0.0037987757273185707
ETTLHNLSF	9	Unmodified	_ETTLHNLSF_					0	0	0		tr|U7SVV7|U7SVV7_FUSNUOxygen-independentcoproporphyrinogenIIIoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01354PE=4SV=1	tr|U7SVV7|U7SVV7_FUSNUOxygen-independentcoproporphyrinogenIIIoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01354PE=4SV=1	tr|U7SVV7|U7SVV7_FUSNUOxygen-independentcoproporphyrinogenIIIoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01354PE=4SV=1	MSMS	A375_MHC_IP_R2	2	531.1849975585938	2	531.266739	1060.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.392	1	42.166	41.666	42.666	0.77451								0	0	0	0.12568	1	15357	15357		34.102	8.7031	1				13333	29799	9650	9726	12993	12993					-0.008914377990777211
ETTLSAVASI	10	Unmodified	_ETTLSAVASI_					0	0	0			REV__ENSG00000178177|ENST00000635767|LCORL	REV__ENSG00000178177|ENST00000635767|LCORL	MULTI-SECPEP	A375_MHC_IP_R2	2	496.6686706542969	2	496.268947	990.523341	-0.51462	-0.00025539	0.015679	7.781E-06	-0.49894	-0.00024761	496.26890191703103	39.47	0.65984	40.245	40.016	40.676	0.77451					28	12	3	0	0	0	0.099365	1	14558	14558		81.89	0	1	17381000	+		13334	21491	9651	9727	12994	12994					0.02770026623841204
ETTSENQALY	10	Unmodified	_ETTSENQALY_					0	0	0		nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1	nc|ENSG00000198862|O94822-3|LTN1	nc|ENSG00000198862|O94822-3|LTN1	MULTI-MSMS	A375_MHC_IP_R1	1	577.5262451171875	2	578.26185	1154.50915	-0.18043	-0.00010433	-0.6756	-0.00039067	-0.85602	-0.00049501	578.2613820150066	25.008	0.70964	25.008	24.852	25.562	0					23	13	2	0	0	0	0.69833	1	7245	7245		13.042	2.2185	1	10153000			13335	9354	9652	9728	12995	12995					-0.06192670595078198
ETTSHSTPSFS	11	Unmodified	_ETTSHSTPSFS_					0	0	0		nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A;nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A;MUC3A|p.P2577Sfs*57|1|0.03|ENSG00000169894|chr7:100959507-100959508|-/T|frameshift_variant	nc|ENSG00000169894|Q02505-2|MUC3A	nc|ENSG00000169894|Q02505-2|MUC3A	MULTI-SECPEP	A375_MHC_IP_R1	1	591.1593017578125	2	590.759475	1179.5044	-0.64948	-0.00038369	0.062736	3.7062E-05	-0.58675	-0.00034663	590.7595874252434	26.601	0.45464	26.601	26.423	26.878	0					13	8	2	0	0	0	0.90584	1	7984	7984		22.736	0	1	4576000			13336	7447	9653	9729	12996	12996					-0.07817554737835053
ETTTFQDRLF	10	Unmodified	_ETTTFQDRLF_					0	0	0			REV__nc|ENSG00000155959|P61758-2|VBP1	REV__nc|ENSG00000155959|P61758-2|VBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	420.3308410644531	3	419.875182	1256.60372	-0.41729	-0.00017521	-1.5661	-0.00065755	-1.9833	-0.00083276	420.20878447624324	20.811	0.20349	21.421	21.312	21.516	0.61029					5	3	2	0	0	0	0.94587	1	6510	6510		0.13989	0	1	499480	+		13337	19952	9654	9730	12997	12997					-0.014321120531121778
ETTVLCVSRL	10	Unmodified	_ETTVLCVSRL_					0	0	0		INSRR|p.A860T|1|0.25|ENSG00000027644|chr1:156844621-156844621|C/T|missense_variant	INSRR|p.A860T|1|0.25|ENSG00000027644|chr1:156844621-156844621|C/T|missense_variant	INSRR|p.A860T|1|0.25|ENSG00000027644|chr1:156844621-156844621|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	373.60504150390625	3	374.205875	1119.59579	0.37348	0.00013976	3.9374	0.0014734	4.3109	0.0016132	374.20638700028366	27.191	0.3572	27.869	27.741	28.098	0.67857					11	6	2	0	0	0	0.91909	1	9303	9303		5.4027	0.87384	1	2446800			13338	14169	9655	9731	12998	12998					0.04078037425779257
ETTVVYNLTH	10	Unmodified	_ETTVVYNLTH_					0	0	0		RNF217|p.E314K|1|0.25|ENSG00000146373|chr6:125045268-125045268|G/A|missense_variant;nc|ENSG00000146373|Q8TC41-2|RNF217;ENSG00000146373|ENST00000521654|RNF217	RNF217|p.E314K|1|0.25|ENSG00000146373|chr6:125045268-125045268|G/A|missense_variant	RNF217|p.E314K|1|0.25|ENSG00000146373|chr6:125045268-125045268|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	588.2153930664062	2	588.798403	1175.58225	-0.4923	-0.00028986	-0.17853	-0.00010512	-0.67083	-0.00039498	588.798334960951	92.817	0.35579	93.556	93.291	93.646	0.73902					9	6	2	0	0	0	0.93799	1	35227	35227		1.4819	0.15237	1	1476400			13339	5617	9656	9732	12999	12999					0.0014850291818220285
ETTWVRRRW	9	Unmodified	_ETTWVRRRW_					0	0	0			REV__ENST00000563536.1_1_16:67218917-67219541:-|nuORF	REV__ENST00000563536.1_1_16:67218917-67219541:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	430.96661376953125	3	430.566906	1288.67889	-0.50902	-0.00021917	-0.50432	-0.00021714	-1.0133	-0.00043631	430.5667138794352	58.257	0.35635	59.006	58.779	59.135	0.74894					11	6	2	0	0	0	0.80101	1	22078	22078		2.7352	2.7352	1	1800200	+		13340	26208	9657	9733	13000	13000					0.04609534988640007
ETTWVRRRW	9	Unmodified	_ETTWVRRRW_					0	0	0			REV__ENST00000563536.1_1_16:67218917-67219541:-|nuORF	REV__ENST00000563536.1_1_16:67218917-67219541:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	430.566906	1288.67889	-0.18628	-8.0208E-05	-1.0626	-0.00045753	-1.2489	-0.00053774	430.9007551919222	59.067	0.45924	59.067	58.836	59.295	0	0.030327	-0.00032652	NaN	0.23584	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1648800	+		13341	26208	9657	9733							0.04609534988640007
ETVAYWSREL	10	Unmodified	_ETVAYWSREL_					0	0	0			REV__SYVN1|p.L77F|1|0.4|ENSG00000162298|chr11:65133071-65133071|G/A|missense_variant	REV__SYVN1|p.L77F|1|0.4|ENSG00000162298|chr11:65133071-65133071|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	417.96405029296875	3	418.543544	1252.6088	0.0022652	9.4811E-07	-0.49831	-0.00020856	-0.49604	-0.00020762	418.5433268817055	27.182	0.70503	27.182	26.626	27.331	0					15	13	2	0	0	0	0.93578	1	8215	8215		3.3196	3.3196	1	2356600	+		13342	20242	9658	9734	13001	13001					-0.007398081904739229
ETVAYWSREL	10	Unmodified	_ETVAYWSREL_					0	0	0			REV__SYVN1|p.L77F|1|0.4|ENSG00000162298|chr11:65133071-65133071|G/A|missense_variant	REV__SYVN1|p.L77F|1|0.4|ENSG00000162298|chr11:65133071-65133071|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	418.543544	1252.6088	-0.43801	-0.00018333	0.09518	3.9837E-05	-0.34283	-0.00014349	418.87790123396337	26.527	0.20371	27.187	27.109	27.313	0.65992	0.002397	0.00034961	NaN	3.3196	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2734500	+		13343	20242	9658	9734							-0.007398081904739229
ETVCDDDLHIF	11	Unmodified	_ETVCDDDLHIF_					0	0	0			REV__nc|ENSG00000165304|Q14680-3|MELK	REV__nc|ENSG00000165304|Q14680-3|MELK	MULTI-MSMS	A375_MHC_IP_R1	1	435.9202880859375	3	436.192182	1305.55472	-0.48555	-0.0002118	-0.31426	-0.00013708	-0.79982	-0.00034887	436.19197658219696	30.478	0.40191	30.478	30.301	30.703	0					10	7	2	0	0	0	0.73658	1	9730	9730		2.6312	0.787	1	2331900	+		13344	20572	9659	9735	13002	13002					-0.08583768404378134
ETVCDDDLHIF	11	Unmodified	_ETVCDDDLHIF_					0	0	0			REV__nc|ENSG00000165304|Q14680-3|MELK	REV__nc|ENSG00000165304|Q14680-3|MELK	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	436.192182	1305.55472	-0.48555	-0.0002118	-0.31426	-0.00013708	-0.79982	-0.00034887	436.19197658219696	30.478	0.40191	30.478	30.301	30.703	0	0.0092944	-0.00012639	NaN	2.6312	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2331900	+		13345	20572	9659	9735							-0.08583768404378134
ETVCDDDLHIF	11	Unmodified	_ETVCDDDLHIF_					0	0	0			REV__nc|ENSG00000165304|Q14680-3|MELK	REV__nc|ENSG00000165304|Q14680-3|MELK	MULTI-MATCH	A375_MHC_IP_R2	2		3	436.192182	1305.55472	-0.79017	-0.00034467	0.028329	1.2357E-05	-0.76184	-0.00033231	436.1920901383589	29.761	0.3523	30.459	30.236	30.588	0.69872	-0.0092944	0.00032192	NaN	2.6312	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1560100	+		13346	20572	9659	9735							-0.08583768404378134
ETVDWDKSF	9	Unmodified	_ETVDWDKSF_					0	0	0			REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-SECPEP	A375_MHC_IP_R2	2	563.7056274414062	2	563.756204	1125.49785	-0.61014	-0.00034397	-0.53364	-0.00030084	-1.1438	-0.00064481	564.2568883388699	50.758	0.50402	51.512	51.311	51.815	0.75406					13	9	2	0	0	0	0.75466	1	19030	19030		1.8442	0.19162	1	847900	+		13347	27340	9660	9736	13003	13003					-0.05987447898564824
ETVEIYSKHMM	11	Unmodified	_ETVEIYSKHMM_					0	0	0			REV__nc|ENSG00000166396|O75635-2|SERPINB7	REV__nc|ENSG00000166396|O75635-2|SERPINB7	MULTI-MSMS	A375_MHC_IP_R1	1	684.7192993164062	2	684.320331	1366.62611	-0.78682	-0.00053843	0.18488	0.00012652	-0.60193	-0.00041192	684.3197339567638	86.72	0.55678	86.72	86.477	87.034	0					22	10	3	0	0	0	0.31304	1	31787	31787		45.74	10.808	1	3586800	+		13348	20676	9661	9737	13004	13004					-0.042539719713659
ETVEIYSKHMM	11	Unmodified	_ETVEIYSKHMM_					0	0	0			REV__nc|ENSG00000166396|O75635-2|SERPINB7	REV__nc|ENSG00000166396|O75635-2|SERPINB7	MULTI-MSMS	A375_MHC_IP_R2	2	684.7189331054688	2	684.320331	1366.62611	-0.49251	-0.00033703	-0.41626	-0.00028485	-0.90877	-0.00062189	684.3197357378846	86.102	0.40645	86.835	86.642	87.049	0.733					18	7	3	0	0	0	0.47047	1	32748	32748		33.445	15.072	1	4568500	+		13349	20676	9661	9737	13005	13005					-0.042539719713659
ETVEIYSKHMM	11	Unmodified	_ETVEIYSKHMM_					0	0	0			REV__nc|ENSG00000166396|O75635-2|SERPINB7	REV__nc|ENSG00000166396|O75635-2|SERPINB7	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	684.320331	1366.62611	-0.78682	-0.00053843	0.18488	0.00012652	-0.60193	-0.00041192	684.3197339567638	86.72	0.55678	86.72	86.477	87.034	0	-0.057541	0.00052614	NaN	45.74	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3586800	+		13350	20676	9661	9737							-0.042539719713659
ETVEIYSKHMM	11	Unmodified	_ETVEIYSKHMM_					0	0	0			REV__nc|ENSG00000166396|O75635-2|SERPINB7	REV__nc|ENSG00000166396|O75635-2|SERPINB7	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	684.320331	1366.62611	-0.49251	-0.00033703	-0.41626	-0.00028485	-0.90877	-0.00062189	684.3197357378846	86.102	0.40645	86.835	86.642	87.049	0.733	0.057541	-0.00029661	NaN	45.74	18	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4568500	+		13351	20676	9661	9737							-0.042539719713659
ETVELQISLKN	11	Unmodified	_ETVELQISLKN_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;RPL10A|p.L111Wfs*6|1|0.08|ENSG00000198755|chr6:35470196-35470196|T/-|frameshift_variant;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A;ENST00000467020.5_1_6:35436211-35436817:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	MSMS	A375_MHC_IP_R2	2	425.29608154296875	3	425.23812	1272.69253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.105	1	88.837	88.337	89.337	0.7318								0	0	0	0.14602	1	33524	33524		23.016	10.788	1				13352	9318;12272	9662	9738	13006	13006					0.06709303186585203
ETVETKVEHM	10	Unmodified	_ETVETKVEHM_					0	0	0			REV__SLC8A1|p.N397K|1|0.49|ENSG00000183023|chr2:40429090-40429090|G/T|missense_variant	REV__SLC8A1|p.N397K|1|0.49|ENSG00000183023|chr2:40429090-40429090|G/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	401.9419860839844	3	401.528906	1201.56489	-0.57689	-0.00023164	-0.55503	-0.00022286	-1.1319	-0.0004545	401.52895572239913	24.04	0.55824	24.04	23.584	24.143	0					16	10	2	0	0	0	0.92227	1	6609	6609		7.9454	3.2295	1	3962000	+		13353	28004	9663	9739	13007	13007					-0.027831606791323793
ETVEVARLSN	10	Unmodified	_ETVEVARLSN_					0	0	0			REV__ERICH5|p.D168N|1|0.12|ENSG00000177459|chr8:98089519-98089519|G/A|missense_variant	REV__ERICH5|p.D168N|1|0.12|ENSG00000177459|chr8:98089519-98089519|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	559.100830078125	2	559.296027	1116.5775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.179	1	64.919	64.419	65.419	0.74022								0	0	0	0.15089	1	24336	24336		16.149	1.3108	1		+		13354	26591	9664	9740	13008	13008					0.023876187754240163
ETVFYACLLS	10	Unmodified	_ETVFYACLLS_					0	0	0			REV__nc|ENSG00000115657|Q9NP58-4|ABCB6	REV__nc|ENSG00000115657|Q9NP58-4|ABCB6	MULTI-SECPEP	A375_MHC_IP_R1	1	572.6878051757812	2	573.281	1144.54745	-0.43793	-0.00025106	-1.9318	-0.0011074	-2.3697	-0.0013585	573.2798796602879	84.826	0.71395	84.826	84.241	84.955	0					16	13	2	0	0	0	0.85226	1	30984	30984		14.838	2.3067	1	1658900	+		13355	17904	9665	9741	13009	13009					-0.019044562141289134
ETVGAVVYAE	10	Unmodified	_ETVGAVVYAE_					0	0	0		ENSG00000149308|ENST00000278612|NPAT;ENST00000610253.5_1_11:108042863-108061204:-|nuORF	ENSG00000149308|ENST00000278612|NPAT	ENSG00000149308|ENST00000278612|NPAT	MULTI-MSMS	A375_MHC_IP_R2	2	519.6845092773438	2	519.261122	1036.50769	-0.62445	-0.00032425	0.54625	0.00028365	-0.078201	-4.0607E-05	519.261364847176	63.496	0.66116	64.236	63.987	64.648	0.74023					22	12	2	0	0	0	0.36703	1	23989	23989		36.127	3.3413	1	2919600			13356	5799	9666	9742	13010	13010					-0.00910259893203147
ETVGRSEH	8	Unmodified	_ETVGRSEH_					0	0	0			REV__nc|ENSG00000186654|P85299-2|PRR5	REV__nc|ENSG00000186654|P85299-2|PRR5	MULTI-MSMS	A375_MHC_IP_R1	1	458.1456298828125	2	457.719956	913.425358	-0.21504	-9.8428E-05	0.25547	0.00011693	0.04043	1.8506E-05	457.71985532487804	34.9	0.81229	34.9	34.456	35.269	0					22	15	2	0	0	0	0.7479	1	11474	11474		20.871	3.7583	1	5018100	+		13357	21981	9667	9743	13011	13011					-0.034817371814710896
ETVHNKHLDLE	11	Unmodified	_ETVHNKHLDLE_					0	0	0		nc|ENSG00000062650|Q7Z5K2-2|WAPL;ENSG00000062650|ENST00000298767|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL;ENST00000489996.1_1_10:88226942-88232014:-|nuORF	nc|ENSG00000062650|Q7Z5K2-2|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	MULTI-MSMS	A375_MHC_IP_R1	1	445.615234375	3	445.561486	1333.66263	-0.34777	-0.00015495	-0.1255	-5.5917E-05	-0.47327	-0.00021087	445.5613475647167	23.505	0.76406	23.505	23.227	23.991	0					35	14	5	0	0	0	0.73318	1	6517	6517		5.8681	2.5124	1	86372000			13358	14469	9668	9744	13012	13012					0.009143642412254849
ETVKAAKVW	9	Unmodified	_ETVKAAKVW_					0	0	0		ENSG00000092036|ENST00000541587|HAUS4;nc|ENSG00000092036|Q9H6D7-4|HAUS4;nc|ENSG00000092036|Q9H6D7-3|HAUS4;ENST00000554063.1_1_14:23416808-23417238:-|nuORF;ENST00000556421.5_1_14:23416818-23417238:-|nuORF	ENSG00000092036|ENST00000541587|HAUS4	ENSG00000092036|ENST00000541587|HAUS4	MULTI-SECPEP	A375_MHC_IP_R1	1	515.6923217773438	2	516.297842	1030.58113	-0.87448	-0.00045149	-0.2032	-0.00010491	-1.0777	-0.0005564	516.2975168150186	30.241	0.25213	30.241	30.15	30.402	0					7	4	2	0	0	0	0.53748	1	9593	9593		18.146	0.011366	1	2039100			13359	1991	9669	9745	13013	13013					0.06706333339934645
ETVKSHRSI	9	Unmodified	_ETVKSHRSI_					0	0	0			REV__ENST00000308191.10_1_6:136173036-136173156:+|nuORF	REV__ENST00000308191.10_1_6:136173036-136173156:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	528.1372680664062	2	528.793455	1055.57236	-0.58086	-0.00030715	1.7011	0.00089953	1.1202	0.00059237	529.2950634529553	40.867	0.20087	40.867	40.762	40.963	0					6	3	2	0	0	0	0.75164	1	14112	14112		9.3831	0	1	903650	+		13360	23481	9670	9746	13014	13014					0.046793597034593404
ETVKWLILE	9	Unmodified	_ETVKWLILE_					0	0	0		CON__Q2UVX4	CON__Q2UVX4	CON__Q2UVX4	MULTI-MSMS	A375_MHC_IP_R2	2	378.2767028808594	3	377.55338	1129.63831	-0.15063	-5.687E-05	0.21484	8.1115E-05	0.064215	2.4244E-05	377.5535919592561	24.441	0.60807	25.085	24.806	25.414	0.64368					19	11	3	0	0	0	0.59266	1	7952	7952		15.248	15.248	1	20407000		+	13361	614	9671	9747	13015	13015					0.07867755825691347
ETVKYSMERY	10	Unmodified	_ETVKYSMERY_					0	0	0			REV__ENSG00000101751|ENST00000579534|POLI	REV__ENSG00000101751|ENST00000579534|POLI	MULTI-SECPEP	A375_MHC_IP_R2	2	436.6113586425781	3	435.876306	1304.60709	-0.57204	-0.00024934	2.7678	0.0012064	2.1958	0.00095708	436.2110237189339	19.344	1.011	19.947	19.683	20.694	0.60308					27	19	2	0	0	0	0.94163	1	5999	5999		6.1918	0.40842	1	1314000	+		13362	17183	9672	9748	13016	13016					-0.033031852707381404
ETVLCLVGEGW	11	Unmodified	_ETVLCLVGEGW_					0	0	0			REV__nc|ENSG00000163704|Q5FWE3-3|PRRT3	REV__nc|ENSG00000163704|Q5FWE3-3|PRRT3	MULTI-SECPEP	A375_MHC_IP_R2	2	402.6229553222656	3	402.53388	1204.57981	-0.3288	-0.00013235	0.14951	6.0181E-05	-0.1793	-7.2173E-05	402.53394109225957	23.053	0.50859	23.684	23.521	24.029	0.63015					24	9	3	0	0	0	0.98748	1	7327	7327		7.0371	0	1	3116500	+		13363	27319	9673	9749	13017	13017					-0.01429668811101692
ETVLKGNVY	9	Unmodified	_ETVLKGNVY_					0	0	0			REV__ENSG00000129250|ENST00000320785|KIF1C	REV__ENSG00000129250|ENST00000320785|KIF1C	MULTI-SECPEP	A375_MHC_IP_R1	1	512.1792602539062	2	511.779482	1021.54441	-0.041682	-2.1332E-05	-0.54616	-0.00027951	-0.58784	-0.00030085	511.77910507110084	45.242	0.55538	45.242	44.928	45.484	0					18	10	2	0	0	0	0.3607	1	15805	15805		34.102	0	1	3244900	+		13364	18484	9674	9750	13018	13018					0.034500367233818
ETVNFDDGAF	10	Unmodified	_ETVNFDDGAF_					0	0	0			REV__ENST00000424137.2_1_20:34340744-34341539:+|nuORF	REV__ENST00000424137.2_1_20:34340744-34341539:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	558.2141723632812	2	557.738011	1113.46147	-0.74356	-0.00041471	0.79382	0.00044275	0.050266	2.8035E-05	557.7383064098299	77.014	0.91149	77.757	77.354	78.265	0.74293					36	17	3	0	0	0	0.69306	1	29128	29128		13.906	13.906	1	2735700	+		13365	24623	9675	9751	13019	13019					-0.09072324795283748
ETVNFDDGAF	10	Unmodified	_ETVNFDDGAF_					0	0	0			REV__ENST00000424137.2_1_20:34340744-34341539:+|nuORF	REV__ENST00000424137.2_1_20:34340744-34341539:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	557.738011	1113.46147	-0.49898	-0.0002783	0.99509	0.000555	0.49611	0.0002767	557.738507190657	77.629	0.71155	77.629	77.286	77.998	0	-0.063868	5.6629E-05	NaN	13.906	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3497800	+		13366	24623	9675	9751							-0.09072324795283748
ETVNPISTN	9	Unmodified	_ETVNPISTN_					0	0	0			REV__ENST00000514262.5_1_5:52159827-52162958:+|nuORF	REV__ENST00000514262.5_1_5:52159827-52162958:+|nuORF	MSMS	A375_MHC_IP_R2	2	487.65460205078125	2	487.743096	973.47164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.72	1	103.48	102.98	103.98	0.76428								0	0	0	0.14677	1	38914	38914		26.884	6.43	1		+		13367	22637	9676	9752	13020	13020					-0.01615717070046685
ETVNPYLVIK	10	Unmodified	_ETVNPYLVIK_					0	0	0		ENSG00000077274|ENST00000324068|CAPN6	ENSG00000077274|ENST00000324068|CAPN6	ENSG00000077274|ENST00000324068|CAPN6	MSMS	A375_MHC_IP_R2	2	392.58380126953125	3	392.560535	1174.65977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.34	1	23.97	23.47	24.47	0.63014								0	0	0	0.15207	1	7490	7490		8.4443	0.83535	1				13368	1652	9677	9753	13021	13021					0.07943140854354169
ETVPFTHRLYY	11	Unmodified	_ETVPFTHRLYY_					0	0	0			REV__ENST00000358344.7_1_5:177637895-177638144:+|nuORF	REV__ENST00000358344.7_1_5:177637895-177638144:+|nuORF	MSMS	A375_MHC_IP_R2	2	713.367431640625	2	713.361702	1424.70885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.09	1	103.86	103.36	104.36	0.76428								0	0	0	0.16297	1	39047	39047		3.2813	0	1		+		13369	23855	9678	9754	13022	13022					0.013484291433314866
ETVPPEQVF	9	Unmodified	_ETVPPEQVF_					0	0	0			REV__ENSG00000187742|ENST00000375807|SECISBP2	REV__ENSG00000187742|ENST00000375807|SECISBP2	MSMS	A375_MHC_IP_R2	2	523.2056274414062	2	523.263665	1044.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.964	1	64.705	64.205	65.205	0.74022								0	0	0	0.13805	1	24256	24256		30.225	7.0764	1		+		13370	22043	9679	9755	13023	13023					-0.0076995603058094275
ETVPPKFSL	9	Unmodified	_ETVPPKFSL_					0	0	0			REV__nc|ENSG00000215568|Q2WGN9|GAB4	REV__nc|ENSG00000215568|Q2WGN9|GAB4	MULTI-MSMS	A375_MHC_IP_R2	2	509.6817932128906	2	509.2844	1016.55425	-0.57945	-0.00029511	-0.23329	-0.00011881	-0.81274	-0.00041392	509.2842572441459	43.534	3.0371	44.307	43.876	46.913	0.7724					145	59	6	0	0	0	0.51106	1	16077	16077		19.257	19.257	1	321600000	+		13371	27497	9680	9756	13024	13024					0.04663224728778914
ETVQEGPINQF	11	Unmodified	_ETVQEGPINQF_					0	0	0			REV__nc|ENSG00000029534|P16157-14|ANK1	REV__nc|ENSG00000029534|P16157-14|ANK1	MULTI-SECPEP	A375_MHC_IP_R2	2	421.920166015625	3	421.20682	1260.59863	-0.4663	-0.00019641	2.2795	0.00096012	1.8132	0.00076371	421.541633140291	24.618	0.2029	25.262	25.161	25.364	0.64368					5	3	2	0	0	0	0.99331	1	8142	8142		2.4348	0.18206	1	2797400	+		13372	16297	9681	9757	13025	13025					-0.021244159157504328
ETVRILGSLL	10	Unmodified	_ETVRILGSLL_					0	0	0		nc|ENSG00000174669|Q14542-3|SLC29A2;nc|ENSG00000174669|Q14542-4|SLC29A2;ENSG00000174669|ENST00000357440|SLC29A2	nc|ENSG00000174669|Q14542-3|SLC29A2	nc|ENSG00000174669|Q14542-3|SLC29A2	MULTI-MSMS	A375_MHC_IP_R1	1	367.9608459472656	3	367.560646	1099.66011	-0.096421	-3.544E-05	0.95746	0.00035192	0.86104	0.00031648	367.5607908014521	67.596	0.55623	67.596	67.348	67.904	0					21	10	3	0	0	0	0.71076	1	24516	24516		7.4771	0.43998	1	1708600			13373	7894	9682	9758	13026	13026					0.11426560574250288
ETVRRDKTL	9	Unmodified	_ETVRRDKTL_					0	0	0		ENSG00000225921|ENST00000451315|NOL7;nc|ENSG00000225921|Q9UMY1-2|NOL7	ENSG00000225921|ENST00000451315|NOL7	ENSG00000225921|ENST00000451315|NOL7	MSMS	A375_MHC_IP_R2	2	373.2728271484375	3	373.21565	1116.62512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.53	1	30.229	29.729	30.729	0.69872								0	0	0	0.15438	1	10317	10317		14.405	0.79051	1				13374	9700	9683	9759	13027	13027					0.07147317766271044
ETVSIRQFK	9	Unmodified	_ETVSIRQFK_					0	0	0			REV__ENST00000370382.7_2_1:92568121-92573470:+|nuORF	REV__ENST00000370382.7_2_1:92568121-92573470:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	369.2611083984375	3	369.876746	1106.60841	0.42811	0.00015835	-0.45266	-0.00016743	-0.024553	-9.0814E-06	369.8763565062211	23.049	0.20071	23.049	22.873	23.074	0					5	3	2	0	0	0	0.77003	1	6208	6208		2.2828	0	1	964770	+		13375	24028	9684	9760	13028	13028					0.059368168803075605
ETVSPEQSL	9	Unmodified	_ETVSPEQSL_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-MSMS	A375_MHC_IP_R1	1	495.6422424316406	2	495.242929	988.471305	0.085958	4.257E-05	-0.47531	-0.00023539	-0.38935	-0.00019282	495.24252536764243	44.954	0.90873	44.954	44.676	45.585	0					41	17	3	0	0	0	0.02559	1	15711	15711		78.728	13.493	1	6398900	+		13376	21760	9685	9761	13029	13029					-0.023391367898966564
ETVTQLQNIIE	11	Unmodified	_ETVTQLQNIIE_					0	0	0		GCC2|p.N877Sfs*6|1|0.13|ENSG00000135968|chr2:108471956-108471957|AG/-|frameshift_variant;ENSG00000135968|ENST00000309863|GCC2	GCC2|p.N877Sfs*6|1|0.13|ENSG00000135968|chr2:108471956-108471957|AG/-|frameshift_variant	GCC2|p.N877Sfs*6|1|0.13|ENSG00000135968|chr2:108471956-108471957|AG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	430.63262939453125	3	429.897875	1286.6718	-0.41704	-0.00017929	0.42757	0.00018381	0.010531	4.5271E-06	430.23261066765156	23.813	0.30476	23.813	23.635	23.94	0					6	5	2	0	0	0	0.99424	1	6660	6660		1.0136	0	1	4273700			13377	4735	9686	9762	13030	13030					0.039927128068939055
ETVVLHTT	8	Unmodified	_ETVVLHTT_					0	0	0			REV__CNTN3|p.E672Ifs*7|1|0.11|ENSG00000113805|chr3:74301478-74301479|TC/-|frameshift_variant	REV__CNTN3|p.E672Ifs*7|1|0.11|ENSG00000113805|chr3:74301478-74301479|TC/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	450.1422119140625	2	450.245275	898.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.802	1	34.802	34.302	35.302	0								0	0	0	0.16876	1	11508	11508		13.508	0.46542	1		+		13378	15813	9687	9763	13031	13031					0.022697921435110402
ETVWIKPEDQ	10	Unmodified	_ETVWIKPEDQ_					0	0	0		nc|ENSG00000135297|Q9Y2Z2-3|MTO1;ENST00000370308.8_1_6:74171496-74189568:+|nuORF;nc|ENSG00000135297|Q9Y2Z2-5|MTO1;ENSG00000135297|ENST00000498286|MTO1;nc|ENSG00000135297|Q9Y2Z2|MTO1;nc|ENSG00000135297|Q9Y2Z2-6|MTO1	nc|ENSG00000135297|Q9Y2Z2-3|MTO1	nc|ENSG00000135297|Q9Y2Z2-3|MTO1	MULTI-SECPEP	A375_MHC_IP_R1	1	622.7086791992188	2	622.81151	1243.60847	-0.38813	-0.00024173	0.38188	0.00023784	-0.0062459	-3.89E-06	623.3139651228051	50.099	0.66469	50.099	49.692	50.357	0					23	12	3	0	0	0	0.88918	1	17693	17693		13.042	0	1	4767400			13379	4664	9688	9764	13032	13032					-0.0035922791032589885
ETVYTSRE	8	Unmodified	_ETVYTSRE_					0	0	0			REV__nc|ENSG00000126777|Q86UP2-2|KTN1	REV__nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-SECPEP	A375_MHC_IP_R2	2	492.64288330078125	2	492.735271	983.45599	-0.5155	-0.00025401	0.19422	9.5699E-05	-0.32128	-0.00015831	492.7351658537289	27.718	0.25198	28.396	28.301	28.553	0.67857					6	4	2	0	0	0	0.92636	1	9523	9523		11.64	3.4848	1	1046400	+		13380	18396	9689	9765	13033	13033					-0.0364000358707699
ETWIHRRWVLQ	11	Unmodified	_ETWIHRRWVLQ_					0	0	0		ENSG00000188647|ENST00000340434|PTAR1;ENST00000467511.1_1_9:72346973-72349163:-|nuORF	ENSG00000188647|ENST00000340434|PTAR1	ENSG00000188647|ENST00000340434|PTAR1	MSMS	A375_MHC_IP_R2	2	508.6758117675781	3	508.612515	1522.81572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.991	1	93.73	93.23	94.23	0.73902								0	0	0	0.16309	1	35357	35357		2.6312	0.19645	1				13381	8921	9690	9766	13034	13034					0.07522024148352102
ETWMWQQNQIT	11	Unmodified	_ETWMWQQNQIT_					0	0	0			REV__ENST00000552253.1_1_12:70986014-71031175:-|nuORF	REV__ENST00000552253.1_1_12:70986014-71031175:-|nuORF	MSMS	A375_MHC_IP_R1	1	732.795166015625	2	732.832451	1463.65035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.43	1	106.43	105.93	106.93	0								0	0	0	0.16249	1	39066	39066		5.7319	0.43497	1		+		13382	18415	9691	9767	13035	13035					-0.06292995493436138
ETWSIYRDW	9	Unmodified	_ETWSIYRDW_					0	0	0			REV__nc|ENSG00000156970|O60566-2|BUB1B	REV__nc|ENSG00000156970|O60566-2|BUB1B	MULTI-SECPEP	A375_MHC_IP_R2	2	627.6963500976562	2	628.290745	1254.56694	-0.73961	-0.00046469	2.0454	0.0012851	1.3058	0.00082044	628.7923033618649	92.224	0.2533	92.963	92.836	93.089	0.73902					7	4	2	0	0	0	0.77834	1	35050	35050		4.756	0	1	755690	+		13383	20003	9692	9768	13036	13036					-0.05016363879008168
ETWTTSVAE	9	Unmodified	_ETWTTSVAE_					0	0	0		CON__P00735	CON__P00735	CON__P00735	MULTI-MSMS	A375_MHC_IP_R1	1	513.6533813476562	2	512.235104	1022.45566	-0.43931	-0.00022503	-0.15731	-8.058E-05	-0.59662	-0.00030561	512.2349847307394	63.546	1.4771	63.546	63.069	64.546	0					81	28	5	0	0	0	0.35581	1	23080	23080		26.884	0	1	87245000		+	13384	577	9693	9769	13037	13037					-0.05467423306947694
ETWVHDTY	8	Unmodified	_ETWVHDTY_					0	0	0			REV__NGLY1|p.A354Dfs*14|1|0.54|ENSG00000151092|chr3:25736092-25736092|G/-|frameshift_variant	REV__NGLY1|p.A354Dfs*14|1|0.54|ENSG00000151092|chr3:25736092-25736092|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	525.6231079101562	2	525.729989	1049.44543	-0.59905	-0.00031494	-3.0686	-0.0016132	-3.6676	-0.0019282	525.7276104908788	44.82	0.56122	45.59	45.39	45.951	0.7691					16	10	2	0	0	0	0.7338	1	16738	16738		24.674	1.5255	1	1364000	+		13385	27601	9694	9770	13038	13038					-0.07731986241515187
ETWYHEYERY	10	Unmodified	_ETWYHEYERY_					0	0	0			REV__ENSG00000035720|ENST00000265404|STAP1	REV__ENSG00000035720|ENST00000265404|STAP1	MSMS	A375_MHC_IP_R2	2	492.4774169921875	3	492.545724	1474.61534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.777	1	47.538	47.038	48.038	0.76128								0	0	0	0.1562	1	17527	17527		0.69767	0	1		+		13386	16317	9695	9771	13039	13039					-0.10297915029764226
ETYDRKLKNEL	11	Unmodified	_ETYDRKLKNEL_					0	0	0		ENSG00000046651|ENST00000340096|OFD1;nc|ENSG00000046651|O75665-2|OFD1;ENST00000490265.5_1_X:13753187-13770868:+|nuORF	ENSG00000046651|ENST00000340096|OFD1	ENSG00000046651|ENST00000340096|OFD1	MULTI-MSMS	A375_MHC_IP_R2	2	705.2747802734375	2	704.875173	1407.73579	-0.91301	-0.00064356	-0.028108	-1.9812E-05	-0.94112	-0.00066337	704.8753097358052	54.654	0.60956	55.404	55.068	55.678	0.75075					16	11	2	0	0	0	0.72728	1	20702	20702		11.495	0	1	1964100			13387	1190	9696	9772	13040	13040					0.04823492963851095
ETYDRKLKNEL	11	Unmodified	_ETYDRKLKNEL_					0	0	0		ENSG00000046651|ENST00000340096|OFD1;nc|ENSG00000046651|O75665-2|OFD1;ENST00000490265.5_1_X:13753187-13770868:+|nuORF	ENSG00000046651|ENST00000340096|OFD1	ENSG00000046651|ENST00000340096|OFD1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	704.875173	1407.73579	-0.59196	-0.00041726	0.073101	5.1527E-05	-0.51886	-0.00036573	704.8751492412795	55.368	0.55972	55.368	55.075	55.635	0	-0.018149	8.6889E-05	NaN	11.495	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1754500			13388	1190	9696	9772							0.04823492963851095
ETYEKISLLM	10	Unmodified	_ETYEKISLLM_					0	0	0		RAD51AP2|p.P689S|1|0.41|ENSG00000214842|chr2:17516351-17516351|G/A|missense_variant	RAD51AP2|p.P689S|1|0.41|ENSG00000214842|chr2:17516351-17516351|G/A|missense_variant	RAD51AP2|p.P689S|1|0.41|ENSG00000214842|chr2:17516351-17516351|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	409.6156005859375	3	409.549418	1225.62643	-0.23668	-9.6933E-05	0.86959	0.00035614	0.63291	0.00025921	409.8841068036167	24.105	0.30731	24.748	24.499	24.806	0.64368					8	5	2	0	0	0	0.70972	1	7893	7893		7.9454	0	1	1540500			13389	15264	9697	9773	13041	13041					0.022637710201706795
ETYFLKGCL	9	Unmodified	_ETYFLKGCL_					0	0	0			REV__ZNF407|p.S1452L|2|0.22|ENSG00000215421|chr18:74635374-74635374|C/T|missense_variant	REV__ZNF407|p.S1452L|2|0.22|ENSG00000215421|chr18:74635374-74635374|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	1072.9345703125	1	1073.53359	1072.52632	0.24323	0.00026112	-0.43954	-0.00047186	-0.19631	-0.00021075	1073.5350036034806	116.05	1.5747	116.73	116.03	117.6	0.68127					40	30	2	0	0	0	0.75466	1	43929	43929		4.3292	0.38484	1	52917000	+		13390	29039	9698	9774	13042	13042					-0.007044215229825568
ETYFLKGCL	9	Unmodified	_ETYFLKGCL_					0	0	0			REV__ZNF407|p.S1452L|2|0.22|ENSG00000215421|chr18:74635374-74635374|C/T|missense_variant	REV__ZNF407|p.S1452L|2|0.22|ENSG00000215421|chr18:74635374-74635374|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		1	1073.53359	1072.52632	0.39679	0.00042596	0.084013	9.019E-05	0.4808	0.00051615	1073.5359018463625	116.79	1.3709	116.79	115.94	117.31	0	0.032281	0.00026522	NaN	4.3292	39	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31995000	+		13391	29039	9698	9774							-0.007044215229825568
ETYIGLDGFW	10	Unmodified	_ETYIGLDGFW_					0	0	0			REV__ENST00000532998.5_1_17:8077523-8077748:-|nuORF	REV__ENST00000532998.5_1_17:8077523-8077748:-|nuORF	MSMS	A375_MHC_IP_R1	1	600.906494140625	2	600.782222	1199.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.963	1	85.963	85.463	86.463	0								0	0	0	0.15308	1	31512	31512		10.824	0.75	1		+		13392	25873	9699	9775	13043	13043					-0.041902844847982124
ETYIRQRQL	9	Unmodified	_ETYIRQRQL_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-SECPEP	A375_MHC_IP_R2	2	402.9400939941406	3	402.891166	1205.65167	-0.25127	-0.00010124	-3.0709	-0.0012372	-3.3222	-0.0013385	403.2237943837529	26.843	0.7142	27.503	26.957	27.671	0.65992					16	13	2	0	0	0	0.71541	1	8926	8926		4.5289	0	1	3527800			13393	5684	9700	9776	13044	13044					0.05707006657621605
ETYKMCKEF	9	Unmodified	_ETYKMCKEF_					0	0	0		ENSG00000102763|ENST00000379310|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8	ENSG00000102763|ENST00000379310|VWA8	ENSG00000102763|ENST00000379310|VWA8	MULTI-SECPEP	A375_MHC_IP_R1	1	394.2590026855469	3	393.512199	1177.51477	-0.11551	-4.5455E-05	0.64802	0.000255	0.53251	0.00020955	393.51241638734683	28.111	0.55388	28.111	27.937	28.491	0					31	10	4	0	0	0	0.50702	1	8655	8655		18.373	0	1	20370000			13394	2391	9701	9777	13045	13045					-0.06688986608651248
ETYLHLET	8	Unmodified	_ETYLHLET_					0	0	0			REV__nc|ENSG00000086827|O43264-2|ZW10	REV__nc|ENSG00000086827|O43264-2|ZW10	MULTI-SECPEP	A375_MHC_IP_R1	1	502.6597900390625	2	503.248015	1004.48148	-0.37835	-0.0001904	0.18729	9.4255E-05	-0.19106	-9.6149E-05	503.2479880490652	73.96	0.70881	73.96	73.64	74.349	0					26	13	2	0	0	0	0.69059	1	27076	27076		46.921	12.818	1	2041500	+		13395	16860	9702	9778	13046	13046					-0.02058529064652248
ETYPENDWD	9	Unmodified	_ETYPENDWD_					0	0	0		ENSG00000183943|ENST00000262848|PRKX	ENSG00000183943|ENST00000262848|PRKX	ENSG00000183943|ENST00000262848|PRKX	MULTI-SECPEP	A375_MHC_IP_R2	2	584.4977416992188	2	584.725101	1167.43565	-0.74661	-0.00043656	-0.051899	-3.0347E-05	-0.79851	-0.00046691	584.7248297478104	61.803	0.55385	62.546	62.27	62.824	0.74263					15	10	2	0	0	0	0.78798	1	23493	23493		3.9444	0	1	1375000			13396	8544	9703	9779	13047	13047					-0.14137219037570503
ETYQARLQQ	9	Unmodified	_ETYQARLQQ_					0	0	0		ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	MULTI-MSMS	A375_MHC_IP_R2	2	569.6876831054688	2	568.78837	1135.56219	-0.68496	-0.00038959	-1.0837	-0.00061642	-1.7687	-0.001006	569.2885928727226	23.068	0.40837	23.698	23.47	23.878	0.63015					10	7	2	0	0	0	0.46038	1	7391	7391		21.747	7.8406	1	1554200			13397	2551	9704	9780	13048	13048					-0.00017248021754312504
ETYQARLQQ	9	Unmodified	_ETYQARLQQ_					0	0	0		ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	MULTI-MATCH	A375_MHC_IP_R1	1		2	568.78837	1135.56219	-0.63012	-0.00035841	0.05714	3.25E-05	-0.57298	-0.00032591	568.788005660088	23.508	0.30553	23.508	23.33	23.635	0	-0.094822	0.00043584	NaN	21.747	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3208800			13398	2551	9704	9780							-0.00017248021754312504
ETYRCIKQVHY	11	Unmodified	_ETYRCIKQVHY_					0	0	0		ENSG00000173846|ENST00000372201|PLK3;ENST00000476731.1_1_1:45267326-45268846:+|nuORF;ENST00000465443.5_1_1:45266117-45270174:+|nuORF	ENSG00000173846|ENST00000372201|PLK3	ENSG00000173846|ENST00000372201|PLK3	MSMS	A375_MHC_IP_R1	1	480.47174072265625	3	480.57485	1438.70272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.027	1	29.027	28.527	29.527	0								0	0	0	0.16334	1	9027	9027		1.3296	0.11481	1				13399	7833	9705	9781	13049	13049					0.0009158764014500775
ETYREHSV	8	Unmodified	_ETYREHSV_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MULTI-MSMS	A375_MHC_IP_R1	1	511.1401672363281	2	510.740888	1019.46722	-0.42876	-0.00021899	-0.31939	-0.00016312	-0.74815	-0.00038211	510.7405987322258	25.115	0.55803	25.115	24.953	25.511	0					19	10	2	0	0	0	0.61116	1	7286	7286		44.407	0.54872	1	8322800	+		13400	22098	9706	9782	13050	13050					-0.041731814929448774
ETYREHSV	8	Unmodified	_ETYREHSV_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MULTI-MSMS	A375_MHC_IP_R2	2	511.1404113769531	2	510.740888	1019.46722	-1.1164	-0.00057019	0.14625	7.4695E-05	-0.97014	-0.00049549	510.7408416464767	24.657	0.50789	25.3	25.06	25.568	0.64368					17	9	2	0	0	0	0.61116	1	8140	8140		44.407	8.28	1	4691300	+		13401	22098	9706	9782	13051	13051					-0.041731814929448774
ETYRGYLY	8	Unmodified	_ETYRGYLY_					0	0	0			REV__ENSG00000182446|ENST00000331134|NPLOC4	REV__ENSG00000182446|ENST00000331134|NPLOC4	MULTI-MSMS	A375_MHC_IP_R2	2	532.698974609375	2	532.756007	1063.49746	-1.1522	-0.00061382	-1.1595	-0.00061771	-2.3116	-0.0012315	532.7554727333188	25.301	0.30789	25.945	25.77	26.078	0.64368					15	5	4	0	0	0	0.7758	1	8376	8376		10.183	0.80027	1	8306500	+		13402	21688	9707	9783	13052	13052					-0.031748228277592716
ETYRKLAKNLE	11	Unmodified	_ETYRKLAKNLE_					0	0	0		CTAGE15|p.D439N|1|0.11|ENSG00000271079|chr7:143573132-143573132|G/A|missense_variant	CTAGE15|p.D439N|1|0.11|ENSG00000271079|chr7:143573132-143573132|G/A|missense_variant	CTAGE15|p.D439N|1|0.11|ENSG00000271079|chr7:143573132-143573132|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	456.3049621582031	3	455.589265	1363.74596	-0.50836	-0.0002316	0.25541	0.00011636	-0.25295	-0.00011524	455.9239271301615	23.863	0.25367	23.863	23.737	23.991	0					5	4	2	0	0	0	0.99331	1	6626	6626		4.4062	0	1	711660			13403	678	9708	9784	13053	13053					0.07864100689107545
ETYRRIQE	8	Unmodified	_ETYRRIQE_					0	0	0		nc|ENSG00000136449|Q8TBZ2|MYCBPAP;ENSG00000136449|ENST00000323776|MYCBPAP;ENST00000470609.5_1_17:48585906-48599496:+|nuORF	nc|ENSG00000136449|Q8TBZ2|MYCBPAP	nc|ENSG00000136449|Q8TBZ2|MYCBPAP	MULTI-SECPEP	A375_MHC_IP_R1	1	547.235595703125	2	547.783087	1093.55162	-0.74324	-0.00040714	-0.54845	-0.00030043	-1.2917	-0.00070757	547.7827523705558	32.459	0.45383	32.459	32.231	32.684	0					12	8	2	0	0	0	0.95373	1	10508	10508		19.257	7.6167	1	1704000			13404	4789	9709	9785	13054	13054					0.008587693238041538
ETYTMKESDGY	11	Unmodified	_ETYTMKESDGY_					0	0	0			REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	MULTI-MSMS	A375_MHC_IP_R2	2	662.6738891601562	2	662.2741	1322.53365	-0.82986	-0.0005496	1.3598	0.00090058	0.52997	0.00035098	662.2749595986307	78.314	0.50729	79.056	78.878	79.385	0.74293					10	9	2	0	0	0	0.73378	1	29768	29768		5.2969	1.3525	1	1672400	+		13405	17885	9710	9786	13055	13055					-0.11471778503869245
ETYTMKESDGY	11	Unmodified	_ETYTMKESDGY_					0	0	0			REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	662.2741	1322.53365	-0.82986	-0.0005496	1.3598	0.00090058	0.52997	0.00035098	662.2749595986307	78.314	0.50729	79.056	78.878	79.385	0.74293	0.11165	-0.0003176	NaN	5.2969	10	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1672400	+		13406	17885	9710	9786							-0.11471778503869245
ETYVDKMTKF	10	Unmodified	_ETYVDKMTKF_					0	0	0			REV__ENSG00000173988|ENST00000595396|LRRC63	REV__ENSG00000173988|ENST00000595396|LRRC63	MULTI-MSMS	A375_MHC_IP_R1	1	421.61041259765625	3	421.209285	1260.60602	0.3724	0.00015686	1.8857	0.00079428	2.2581	0.00095114	421.2099086066349	22.05	0.30411	22.05	21.86	22.164	0					8	5	2	0	0	0	0.70651	1	5905	5905		5.4027	1.5264	1	1238700	+		13407	21257	9711	9787	13056	13056					-0.01385399639661955
ETYWLPEEKY	10	Unmodified	_ETYWLPEEKY_					0	0	0			REV__ENSG00000170871|ENST00000307659|KIAA0232	REV__ENSG00000170871|ENST00000307659|KIAA0232	MULTI-MSMS	A375_MHC_IP_R2	2	453.1601867675781	3	453.215204	1356.62378	-0.51195	-0.00023202	-0.3606	-0.00016343	-0.87255	-0.00039545	453.2151639294937	19.035	0.24981	19.638	19.483	19.733	0.60308					12	4	4	0	0	0	0.72006	1	5660	5660		3.3196	1.7274	1	10152000	+		13408	21026	9712	9788	13057	13057					-0.040263611131422294
ETYWYLWR	8	Unmodified	_ETYWYLWR_					0	0	0		ENSG00000198162|ENST00000356554|MAN1A2	ENSG00000198162|ENST00000356554|MAN1A2	ENSG00000198162|ENST00000356554|MAN1A2	MULTI-SECPEP	A375_MHC_IP_R1	1	609.1961669921875	2	608.792924	1215.57129	-0.22576	-0.00013744	2.8171	0.001715	2.5914	0.0015776	609.2952824701465	56.635	0.50784	56.635	56.397	56.905	0					21	9	3	0	0	0	0.972	1	20326	20326		2.0598	0	1	1730000			13409	9235	9713	9789	13058	13058					-0.027868546654644888
ETYYWDPNEA	10	Unmodified	_ETYYWDPNEA_					0	0	0			REV__nc|ENSG00000148702|Q14520-2|HABP2	REV__nc|ENSG00000148702|Q14520-2|HABP2	MULTI-MSMS	A375_MHC_IP_R2	2	429.658203125	3	429.843659	1286.50915	-0.74039	-0.00031825	-0.15301	-6.577E-05	-0.8934	-0.00038402	430.1780111063088	33.672	0.55676	34.425	34.196	34.753	0.75225					15	10	2	0	0	0	0.72014	1	12208	12208		1.5923	0.26264	1	2800200	+		13410	19645	9714	9790	13059	13059					-0.12264670595095595
EVAEVKPKPET	11	Unmodified	_EVAEVKPKPET_					0	0	0		ZNF668|p.H393Tfs*15|1|0.31|ENSG00000167394|chr16:31061751-31061751|G/-|frameshift_variant;ENSG00000167394|ENST00000300849|ZNF668;nc|ENSG00000167394|Q96K58-2|ZNF668	ZNF668|p.H393Tfs*15|1|0.31|ENSG00000167394|chr16:31061751-31061751|G/-|frameshift_variant	ZNF668|p.H393Tfs*15|1|0.31|ENSG00000167394|chr16:31061751-31061751|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	409.9587097167969	3	409.559082	1225.65542	-0.21068	-8.6286E-05	0.12853	5.2642E-05	-0.082146	-3.3644E-05	409.8935281555359	24.372	0.50484	24.372	24.143	24.647	0					13	9	2	0	0	0	0.73354	1	6973	6973		5.5233	0.62628	1	4829600			13411	7182	9715	9791	13060	13060					0.051616316407944396
EVAFWTNLF	9	Unmodified	_EVAFWTNLF_					0	0	0		ENST00000421606.6_2_16:55801397-55827869:+|nuORF;nc|ENSG00000198848|P23141-3|CES1;nc|ENSG00000198848|P23141|CES1;ENSG00000198848|ENST00000360526|CES1	ENST00000421606.6_2_16:55801397-55827869:+|nuORF	ENST00000421606.6_2_16:55801397-55827869:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	565.2471923828125	2	563.782025	1125.5495	-0.76869	-0.00043337	-2.2844	-0.0012879	-3.0531	-0.0017213	563.7800070046001	71.488	0.70963	72.222	71.806	72.516	0.73421					30	13	4	0	0	0	0.64808	1	27056	27056		11.64	0	1	2752300			13412	9349	9716	9792	13061	13061					-0.008256594140220841
EVAIEALSAN	10	Unmodified	_EVAIEALSAN_					0	0	0		nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2	nc|ENSG00000066032|P26232-3|CTNNA2	nc|ENSG00000066032|P26232-3|CTNNA2	MSMS	A375_MHC_IP_R1	1	508.6744079589844	2	508.766571	1015.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.816	1	89.816	89.316	90.316	0								0	0	0	0.14483	1	33002	33002		27.629	0	1				13413	1400	9717	9793	13062	13062					0.011451424810729804
EVAKAFPERVY	11	Unmodified	_EVAKAFPERVY_					0	0	0		nc|ENSG00000141441|Q9H706-3|GAREM1;nc|ENSG00000141441|Q9H706-2|GAREM1;ENSG00000141441|ENST00000269209|GAREM1	nc|ENSG00000141441|Q9H706-3|GAREM1	nc|ENSG00000141441|Q9H706-3|GAREM1	MULTI-MSMS	A375_MHC_IP_R2	2	436.9383239746094	3	436.903072	1307.68739	-0.56091	-0.00024506	-0.8575	-0.00037464	-1.4184	-0.0006197	436.90273882166514	19.025	0.40163	19.628	19.533	19.935	0.60308					12	7	2	0	0	0	0.73502	1	5904	5904		4.1166	0	1	2300700			13414	14645	9718	9794	13063	13063					0.045850441146058074
EVALYCAKY	9	Unmodified	_EVALYCAKY_					0	0	0		ENSG00000115241|ENST00000344034|PPM1G	ENSG00000115241|ENST00000344034|PPM1G	ENSG00000115241|ENST00000344034|PPM1G	MULTI-MSMS	A375_MHC_IP_R1	1	530.6617431640625	2	530.26261	1058.51067	-0.21544	-0.00011424	-0.78829	-0.000418	-1.0037	-0.00053224	530.2622101234757	48.366	0.50648	48.366	48.122	48.629	0					19	9	3	0	0	0	0.63811	1	17040	17040		12.532	12.532	1	3588400			13415	3288	9719	9795	13064	13064					-0.016247080400262348
EVANRLNLE	9	Unmodified	_EVANRLNLE_					0	0	0			REV__ENSG00000133704|ENST00000256079|IPO8	REV__ENSG00000133704|ENST00000256079|IPO8	MULTI-MSMS	A375_MHC_IP_R1	1	529.837890625	2	529.285463	1056.55637	-0.34328	-0.00018169	-1.3108	-0.0006938	-1.6541	-0.00087549	529.7861425261596	71.66	0.40034	71.66	71.465	71.866	0					11	7	2	0	0	0	0.64971	1	26054	26054		7.2892	0	1	7157300	+		13416	18729	9720	9796	13065	13065					0.030356534665770596
EVARQALF	8	Unmodified	_EVARQALF_					0	0	0			REV__nc|ENSG00000108465|Q96JB5-3|CDK5RAP3	REV__nc|ENSG00000108465|Q96JB5-3|CDK5RAP3	MULTI-MSMS	A375_MHC_IP_R2	2	467.6610107421875	2	467.261259	932.507966	-0.81332	-0.00038003	0.45678	0.00021344	-0.35654	-0.0001666	467.26140142266394	50.278	0.55722	51.032	50.753	51.311	0.75406					23	10	3	0	0	0	0.74945	1	18958	18958		20.454	3.3407	1	2649000	+		13417	17533	9721	9797	13066	13066					0.039012046173297676
EVARTWHKLIK	11	Unmodified	_EVARTWHKLIK_					0	0	0		ENSG00000198677|ENST00000358746|SKIC3;ENST00000515207.1_1_5:94872443-94877598:-|nuORF	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	MSMS	A375_MHC_IP_R2	2	690.908203125	2	690.909153	1379.80375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.74	1	121.18	120.68	121.68	0.44488								0	0	0	0.16265	1	46103	46103		4.897	1.6157	1				13418	9297	9722	9798	13067	13067					0.12904407405153506
EVASISVTAF	10	Unmodified	_EVASISVTAF_					0	0	0			REV__nc|ENSG00000188662|P60008|H1-9P	REV__nc|ENSG00000188662|P60008|H1-9P	MULTI-SECPEP	A375_MHC_IP_R2	2	512.6404418945312	2	512.27149	1022.52843	-1.0168	-0.00052086	-1.0552	-0.00054053	-2.0719	-0.0010614	512.2711578373962	71.901	0.65725	72.635	72.364	73.021	0.73421					21	12	3	0	0	0	0.52461	1	27268	27268		36.127	0	1	2535200	+		13419	27429	9723	9799	13068	13068					0.018063304864881502
EVASVGRSKV	10	Unmodified	_EVASVGRSKV_					0	0	0			REV__ENST00000396987.7_1_8:41480416-41480683:+|nuORF	REV__ENST00000396987.7_1_8:41480416-41480683:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	516.6950073242188	2	516.29583	1030.57711	-0.71676	-0.00037006	-0.20678	-0.00010676	-0.92354	-0.00047682	516.295652172486	126.12	1.2145	126.42	125.87	127.09	0.2951					51	23	3	0	0	0	0.70793	1	49458	49458		8.7454	0.58988	1	15183000	+		13420	24350	9724	9800	13069	13069					0.06304243846238933
EVASVGRSKV	10	Unmodified	_EVASVGRSKV_					0	0	0			REV__ENST00000396987.7_1_8:41480416-41480683:+|nuORF	REV__ENST00000396987.7_1_8:41480416-41480683:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	516.29583	1030.57711	-0.21297	-0.00010996	-0.15771	-8.1424E-05	-0.37068	-0.00019138	516.2956504520358	126.52	1.3123	126.52	125.85	127.16	0	0.049268	3.9332E-05	NaN	8.7454	35	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13707000	+		13421	24350	9724	9800							0.06304243846238933
EVATSTRLT	9	Unmodified	_EVATSTRLT_					0	0	0			REV__ULK4|p.P367L|1|0.38|ENSG00000168038|chr3:41907927-41907927|G/A|missense_variant	REV__ULK4|p.P367L|1|0.38|ENSG00000168038|chr3:41907927-41907927|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	489.6447448730469	2	489.266739	976.518924	-0.64009	-0.00031318	-0.052165	-2.5523E-05	-0.69226	-0.0003387	489.2666650553086	55.544	0.55728	56.295	56.034	56.591	0.75075					17	10	2	0	0	0	0.73363	1	21078	21078		10.824	0	1	1134500	+		13422	28953	9725	9801	13070	13070					0.02972562200932316
EVAVKRQCNSM	11	Unmodified	_EVAVKRQCNSM_					0	0	0			REV__ENSG00000083093|ENST00000261584|PALB2	REV__ENSG00000083093|ENST00000261584|PALB2	MSMS	A375_MHC_IP_R1	1	422.12744140625	3	422.209402	1263.60638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.107	1	24.107	23.607	24.607	0								0	0	0	0.15488	1	6759	6759		10.527	2.6814	1		+		13423	16798	9726	9802	13071	13071					-0.01488303191445084
EVAVSRITP	9	Unmodified	_EVAVSRITP_					0	0	0		AluSz6_dup36815|chr15:60362892-60363058:+|1.3026560341287117|0.0012375329650786|10.04|472.0|2|1|sense	AluSz6_dup36815|chr15:60362892-60363058:+|1.3026560341287117|0.0012375329650786|10.04|472.0|2|1|sense	AluSz6_dup36815|chr15:60362892-60363058:+|1.3026560341287117|0.0012375329650786|10.04|472.0|2|1|sense	MULTI-SECPEP	A375_MHC_IP_R2	2	486.6546630859375	2	486.279649	970.544745	-1.1036	-0.00053665	0.37211	0.00018095	-0.73146	-0.0003557	486.2798132610173	53.593	0.56421	54.344	54.097	54.661	0.75105					17	10	2	0	0	0	0.27742	1	20284	20284		36.506	0	1	3170200			13424	118	9727	9803	13072	13072					0.05829456443234449
EVAWNIHMG	9	Unmodified	_EVAWNIHMG_					0	0	0		ENST00000326505.3_1_3:182971242-182987339:+|nuORF	ENST00000326505.3_1_3:182971242-182987339:+|nuORF	ENST00000326505.3_1_3:182971242-182987339:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	528.6784057617188	2	528.750201	1055.48585	-0.44322	-0.00023435	-2.7592	-0.0014589	-3.2025	-0.0016933	529.2492666706909	91.029	1.1134	91.763	91.109	92.222	0.7345					28	21	2	0	0	0	0.58047	1	34793	34793		15.847	4.2069	1	1628300			13425	10732	9728	9804	13073	13073					-0.03967343122758393
EVAWNIHMG	9	Unmodified	_EVAWNIHMG_					0	0	0		ENST00000326505.3_1_3:182971242-182987339:+|nuORF	ENST00000326505.3_1_3:182971242-182987339:+|nuORF	ENST00000326505.3_1_3:182971242-182987339:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	528.750201	1055.48585	-0.5046	-0.00026681	-1.5752	-0.00083291	-2.0798	-0.0010997	529.2506345344015	91.808	0.70718	91.808	91.503	92.211	0	0.022113	0.00050244	NaN	15.847	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1764500			13426	10732	9728	9804							-0.03967343122758393
EVCCGAHDKY	10	Unmodified	_EVCCGAHDKY_					0	0	0			REV__nc|ENSG00000157036|Q9Y2C4-2|EXOG	REV__nc|ENSG00000157036|Q9Y2C4-2|EXOG	MSMS	A375_MHC_IP_R1	1	562.6713256835938	2	562.728609	1123.44266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.961	1	63.961	63.461	64.461	0								0	0	0	0.15207	1	23134	23134		13.906	5.3128	1		+		13427	25156	9729	9805	13074	13074					-0.1141190096234368
EVCFLLLLL	9	Unmodified	_EVCFLLLLL_					0	0	0		ENST00000377270.7_1_9:71687674-71687986:+|nuORF	ENST00000377270.7_1_9:71687674-71687986:+|nuORF	ENST00000377270.7_1_9:71687674-71687986:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	532.2169799804688	2	531.817021	1061.61949	-0.63108	-0.00033562	-0.20065	-0.00010671	-0.83173	-0.00044233	531.8167944075218	126.49	0.70763	126.79	126.38	127.09	0.2951					22	13	2	0	0	0	0.75466	1	49562	49562		4.3292	2.2695	1	14253000			13428	11293	9730	9806	13075	13075					0.09114502930265189
EVCNTSFFTIN	11	Unmodified	_EVCNTSFFTIN_					0	0	0			REV__ENSG00000105409|ENST00000648268|ATP1A3	REV__ENSG00000105409|ENST00000648268|ATP1A3	MULTI-MSMS	A375_MHC_IP_R1	1	425.9288330078125	3	425.528906	1273.56489	-0.44496	-0.00018934	0.20693	8.8055E-05	-0.23803	-0.00010129	425.5290311310442	30.473	1.4152	30.473	30.15	31.565	0					60	27	4	0	0	0	0.65374	1	9630	9630		19.144	4.306	1	57155000	+		13429	17380	9731	9807	13076	13076					-0.0609516067909226
EVCNTSFFTIN	11	Unmodified	_EVCNTSFFTIN_					0	0	0			REV__ENSG00000105409|ENST00000648268|ATP1A3	REV__ENSG00000105409|ENST00000648268|ATP1A3	MULTI-SECPEP	A375_MHC_IP_R1	1	425.1365966796875	3	425.528906	1273.56489	-0.44496	-0.00018934	0.20693	8.8055E-05	-0.23803	-0.00010129	425.5290311310442	30.473	1.4152	30.473	30.15	31.565	0					60	27	4	0	0	0	0.9348	1	9705	9705		23.964	0	1	57155000	+		13430	17380	9731	9807	13077	13077					-0.0609516067909226
EVCNTSFFTIN	11	Unmodified	_EVCNTSFFTIN_					0	0	0			REV__ENSG00000105409|ENST00000648268|ATP1A3	REV__ENSG00000105409|ENST00000648268|ATP1A3	MULTI-SECPEP	A375_MHC_IP_R2	2	425.15863037109375	3	425.528906	1273.56489	-0.69624	-0.00029627	0.32594	0.0001387	-0.3703	-0.00015757	425.5290554979084	29.668	0.96143	30.367	30.083	31.044	0.69872					50	18	5	0	0	0	0.98336	1	10425	10425		14.838	3.7726	1	73816000	+		13431	17380	9731	9807	13078	13078					-0.0609516067909226
EVCVARDELLF	11	Unmodified	_EVCVARDELLF_					0	0	0			REV__ENSG00000155760|ENST00000286201|FZD7	REV__ENSG00000155760|ENST00000286201|FZD7	MULTI-SECPEP	A375_MHC_IP_R1	1	431.2877197265625	3	431.888434	1292.64347	-0.51229	-0.00022125	2.46	0.0010625	1.9477	0.0008412	432.2226532141093	142.36	1.9351	142.36	140.86	142.79	0					51	37	2	0	0	0	0.99921	1	54439	54439		0.45452	0.45452	1	936680	+		13432	19937	9732	9808	13079	13079					0.008856916259674108
EVCVRVCM	8	Unmodified	_EVCVRVCM_					0	0	0			REV__ENST00000586222.1_3_18:13382561-13382669:+|nuORF	REV__ENST00000586222.1_3_18:13382561-13382669:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	469.6366882324219	2	469.716459	937.418364	-0.78291	-0.00036775	1.1379	0.00053447	0.35495	0.00016672	469.71714138882254	72.298	0.50693	73.033	72.77	73.277	0.73506					10	9	2	0	0	0	0.77603	1	27428	27428		9.3474	0	1	638340	+		13433	26384	9733	9809	13080	13080					-0.052848326495563924
EVDFVKRYWHY	11	Unmodified	_EVDFVKRYWHY_					0	0	0			REV__MAP3K6|p.A385V|1|0.38|ENSG00000142733|chr1:27362742-27362742|G/A|missense_variant	REV__MAP3K6|p.A385V|1|0.38|ENSG00000142733|chr1:27362742-27362742|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	514.61376953125	3	514.589376	1540.7463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.327	1	37.098	36.598	37.598	0.7709								0	0	0	0.16305	1	13234	13234		2.8433	1.5136	1		+		13434	26984	9734	9810	13081	13081					-0.002444795910605535
EVDIEDKY	8	Unmodified	_EVDIEDKY_					0	0	0		tr|U7T096|U7T096_FUSNUFimbrialassemblyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00783PE=4SV=1	tr|U7T096|U7T096_FUSNUFimbrialassemblyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00783PE=4SV=1	tr|U7T096|U7T096_FUSNUFimbrialassemblyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00783PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	506.197265625	2	505.73748	1009.46041	-0.70897	-0.00035855	-0.34811	-0.00017605	-1.0571	-0.0005346	505.737212405068	27.577	1.269	28.256	27.741	29.01	0.67857					45	24	4	0	0	0	0.77702	1	9618	9618		5.7604	1.0044	1	6740500			13435	29876	9735	9811	13082	13082					-0.043945391641841525
EVDILYEL	8	Unmodified	_EVDILYEL_					0	0	0			REV__ENSG00000125815|ENST00000246012|CST8	REV__ENSG00000125815|ENST00000246012|CST8	MULTI-SECPEP	A375_MHC_IP_R1	1	497.64752197265625	2	497.260591	992.506628	-0.5138	-0.00025549	1.2051	0.00059927	0.69135	0.00034378	497.26107459709004	80.82	0.55931	80.82	80.592	81.151	0					18	10	2	0	0	0	0.91495	1	29481	29481		7.9102	0	1	2442800	+		13436	18365	9736	9812	13083	13083					0.010075257379071445
EVDKIIPILAL	11	Unmodified	_EVDKIIPILAL_					0	0	0		tr|U7SU16|U7SU16_FUSNUSodium/pantothenatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01275PE=3SV=1	tr|U7SU16|U7SU16_FUSNUSodium/pantothenatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01275PE=3SV=1	tr|U7SU16|U7SU16_FUSNUSodium/pantothenatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01275PE=3SV=1	MSMS	A375_MHC_IP_R1	1	408.5909729003906	3	408.591835	1222.75368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.618	1	29.618	29.118	30.118	0								0	0	0	0.16336	1	9306	9306		1.2148	0.14337	1				13437	29732	9737	9813	13084	13084					0.15120859956687127
EVDKVTGRF	9	Unmodified	_EVDKVTGRF_					0	0	0		ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	MULTI-SECPEP	A375_MHC_IP_R1	1	526.1820068359375	2	525.782556	1049.55056	-0.49196	-0.00025866	0.17602	9.2548E-05	-0.31594	-0.00016612	525.7824416224639	31.895	0.46121	31.895	31.718	32.179	0					10	8	2	0	0	0	0.13244	1	10287	10287		59.368	30.287	1	4154000			13438	7651	9738	9814	13085	13085					0.027765549549030766
EVDKVTGRF	9	Unmodified	_EVDKVTGRF_					0	0	0		ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	MULTI-SECPEP	A375_MHC_IP_R2	2	526.4385986328125	2	525.782556	1049.55056	-0.50994	-0.00026812	-0.066976	-3.5215E-05	-0.57691	-0.00030333	525.7823958294828	31.179	0.35764	31.897	31.719	32.077	0.71857					11	6	2	0	0	0	0.48845	1	11029	11029		24.882	0.20768	1	2854800			13439	7651	9738	9814	13086	13086					0.027765549549030766
EVDLDGPPRAF	11	Unmodified	_EVDLDGPPRAF_					0	0	0		ENSG00000101945|ENST00000376687|SUV39H1;nc|ENSG00000101945|O43463-2|SUV39H1	ENSG00000101945|ENST00000376687|SUV39H1	ENSG00000101945|ENST00000376687|SUV39H1	MULTI-SECPEP	A375_MHC_IP_R2	2	608.191650390625	2	608.303852	1214.59315	-0.4353	-0.0002648	0.12247	7.45E-05	-0.31283	-0.0001903	608.3040338970094	70.634	0.25179	71.369	71.251	71.503	0.73421					7	4	2	0	0	0	0.9889	1	26759	26759		2.4985	0	1	2099400			13440	2337	9739	9815	13087	13087					-0.005560947075309741
EVDLTRSFSFR	11	Unmodified	_EVDLTRSFSFR_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MSMS	A375_MHC_IP_R2	2	678.6471557617188	2	678.848958	1355.68336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.148	1	98.908	98.408	99.408	0.75977								0	0	0	0.16124	1	37240	37240		12.241	4.6317	1				13441	2235	9740	9816	13088	13088					0.019749546208686297
EVDNQDQFY	9	Unmodified	_EVDNQDQFY_					0	0	0			REV__TRPM2|p.H1448Y|1|0.33|ENSG00000142185|chr21:44440861-44440861|C/T|missense_variant	REV__TRPM2|p.H1448Y|1|0.33|ENSG00000142185|chr21:44440861-44440861|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	578.7049560546875	2	579.240918	1156.46728	-0.25304	-0.00014657	-0.66174	-0.0003833	-0.91478	-0.00052988	579.240521895403	77.108	0.66039	77.108	76.776	77.436	0					20	12	2	0	0	0	0.78348	1	28114	28114		4.3292	4.3292	1	1697900	+		13442	28912	9741	9817	13089	13089					-0.10469226283612443
EVDPASNTY	9	Unmodified	_EVDPASNTY_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;chrX:151919037-151923453|150|252.27|0.24|10.04|+|ENST00000431971|MAGEA4,MAGEA4;chrX:151914958-151923453|148|308.46|0.33|9.87|+|ENST00000441865|MAGEA4,MAGEA4;chrX:151913588-151923453|148|306.86|0.32|9.9|+|ENST00000448295|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-MSMS	A375_MHC_IP_R1	1	497.6422424316406	2	498.219454	994.424355	-0.46984	-0.00023408	0.24601	0.00012257	-0.22383	-0.00011151	498.2195920663399	36.977	1.9341	36.977	36.592	38.526	0					101	37	5	0	0	0	0.0007967	4	12404	12344;12404;12430;12574		197.17	96.796	1	272220000			13443	520	9742	9818	13090;13091;13092;13093	13091					-0.07307996341046419
EVDPASNTY	9	Unmodified	_EVDPASNTY_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;chrX:151919037-151923453|150|252.27|0.24|10.04|+|ENST00000431971|MAGEA4,MAGEA4;chrX:151914958-151923453|148|308.46|0.33|9.87|+|ENST00000441865|MAGEA4,MAGEA4;chrX:151913588-151923453|148|306.86|0.32|9.9|+|ENST00000448295|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-MSMS	A375_MHC_IP_R2	2	498.6192321777344	2	498.219454	994.424355	-0.73705	-0.00036721	0.012922	6.4378E-06	-0.72413	-0.00036078	498.219441888039	36.357	1.5774	37.128	36.698	38.275	0.7709					92	30	5	0	0	0	0.0069967	3	13143	13143;13195;13402		166.45	77.544	1	333020000			13444	520	9742	9818	13094;13095;13096	13094					-0.07307996341046419
EVDPATVD	8	Unmodified	_EVDPATVD_					0	0	0			REV__ENSG00000185567|ENST00000333244|AHNAK2	REV__ENSG00000185567|ENST00000333244|AHNAK2	MSMS	A375_MHC_IP_R2	2	423.14080810546875	2	423.19799	844.381428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.95	1	142.98	142.48	143.48	0.030731								0	0	0	0.16876	1	55876	55876		4.756	2.1785	1		+		13445	21900	9743	9819	13097	13097					-0.04698766398485077
EVDPDTILK	9	Unmodified	_EVDPDTILK_					0	0	0		nc|ENSG00000100227|Q9BY77-2|POLDIP3;ENSG00000100227|ENST00000252115|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	MULTI-MSMS	A375_MHC_IP_R1	1	515.6762084960938	2	515.276772	1028.53899	-0.46671	-0.00024049	-0.15638	-8.0577E-05	-0.62309	-0.00032106	515.2765544027819	57.15	0.45864	57.15	56.804	57.263	0					16	8	2	0	0	0	0.066859	1	20489	20489		57.722	11.701	1	3609300			13446	2139	9744	9820	13098	13098					0.02586313140909624
EVDPIGHLY	9	Unmodified	_EVDPIGHLY_					0	0	0		ENSG00000221867|ENST00000370278|MAGEA3;chrX:152698829-152700558|283|12.93|0.02|9.51|+|ENST00000598245|MAGEA3,MAGEA3	ENSG00000221867|ENST00000370278|MAGEA3	ENSG00000221867|ENST00000370278|MAGEA3	MULTI-SECPEP	A375_MHC_IP_R1	1	521.1314086914062	2	521.763832	1041.51311	-0.50331	-0.00026261	-0.89426	-0.00046659	-1.3976	-0.0007292	521.763415946338	74.654	1.6719	74.654	73.64	75.312	0					37	32	2	0	0	0	0.48581	1	26951	26951		18.135	10.225	1	970790			13447	521	9745	9821	13099	13099					-0.00598536310712916
EVDPIGHLY	9	Unmodified	_EVDPIGHLY_					0	0	0		ENSG00000221867|ENST00000370278|MAGEA3;chrX:152698829-152700558|283|12.93|0.02|9.51|+|ENST00000598245|MAGEA3,MAGEA3	ENSG00000221867|ENST00000370278|MAGEA3	ENSG00000221867|ENST00000370278|MAGEA3	MULTI-SECPEP	A375_MHC_IP_R1	1	522.1635131835938	2	521.763832	1041.51311	-0.31801	-0.00016593	-0.63568	-0.00033168	-0.95369	-0.0004976	521.7634711468095	71.525	1.0613	71.525	71.159	72.22	0					72	20	5	0	0	0	0.0088186	1	25916	25916		153.26	91.905	1	512910000			13448	521	9745	9821	13100	13100					-0.00598536310712916
EVDPIGHLY	9	Unmodified	_EVDPIGHLY_					0	0	0		ENSG00000221867|ENST00000370278|MAGEA3;chrX:152698829-152700558|283|12.93|0.02|9.51|+|ENST00000598245|MAGEA3,MAGEA3	ENSG00000221867|ENST00000370278|MAGEA3	ENSG00000221867|ENST00000370278|MAGEA3	MULTI-SECPEP	A375_MHC_IP_R2	2	522.1631469726562	2	521.763832	1041.51311	-0.65456	-0.00034153	-0.5473	-0.00028556	-1.2019	-0.00062709	521.763510189406	70.793	1.0641	71.528	71.149	72.213	0.73421					69	20	5	0	0	0	0.0088186	1	26781	26781		137.59	76.228	1	679950000			13449	521	9745	9821	13101	13101					-0.00598536310712916
EVDPIGHVY	9	Unmodified	_EVDPIGHVY_					0	0	0		ENSG00000197172|ENST00000329342|MAGEA6	ENSG00000197172|ENST00000329342|MAGEA6	ENSG00000197172|ENST00000329342|MAGEA6	MULTI-MSMS	A375_MHC_IP_R1	1	515.1558227539062	2	514.756007	1027.49746	-0.40677	-0.00020939	-0.078044	-4.0174E-05	-0.48481	-0.00024956	514.7558996268838	56.223	1.1687	56.223	55.635	56.804	0					61	22	4	0	0	0	0.1209	2	20238	20238;20253		46.921	25.174	1	27879000			13450	9127	9746	9822	13102;13103	13102					-0.01518822827756594
EVDPIGHVY	9	Unmodified	_EVDPIGHVY_					0	0	0		ENSG00000197172|ENST00000329342|MAGEA6	ENSG00000197172|ENST00000329342|MAGEA6	ENSG00000197172|ENST00000329342|MAGEA6	MULTI-MSMS	A375_MHC_IP_R2	2	515.1901245117188	2	514.756007	1027.49746	-0.84355	-0.00043422	-0.26052	-0.0001341	-1.1041	-0.00056833	514.7559309755112	55.465	1.0166	56.215	55.729	56.745	0.75075					42	19	3	0	0	0	0.0091485	3	21001	21001;21079;21124		101.72	41.332	1	26372000			13451	9127	9746	9822	13104;13105;13106	13104					-0.01518822827756594
EVDPTSHSY	9	Unmodified	_EVDPTSHSY_					0	0	0		nc|ENSG00000185247|P43364-2|MAGEA11;ENST00000518694.1_1_X:148796119-148798433:+|nuORF;ENSG00000185247|ENST00000355220|MAGEA11;ENST00000427910.1_1_X:35077528-35077942:+|nuORF	nc|ENSG00000185247|P43364-2|MAGEA11	nc|ENSG00000185247|P43364-2|MAGEA11	MULTI-MSMS	A375_MHC_IP_R1	1	518.6965942382812	2	517.724904	1033.43525	-0.51468	-0.00026646	-0.34265	-0.0001774	-0.85733	-0.00044386	517.7247094161131	25.261	0.71237	25.261	25.053	25.765	0					40	13	4	0	0	0	0.077132	1	7415	7415		54.774	54.774	1	91218000			13452	8652	9747	9823	13107	13107					-0.08012593966736858
EVDPTSHSY	9	Unmodified	_EVDPTSHSY_					0	0	0		nc|ENSG00000185247|P43364-2|MAGEA11;ENST00000518694.1_1_X:148796119-148798433:+|nuORF;ENSG00000185247|ENST00000355220|MAGEA11;ENST00000427910.1_1_X:35077528-35077942:+|nuORF	nc|ENSG00000185247|P43364-2|MAGEA11	nc|ENSG00000185247|P43364-2|MAGEA11	MULTI-SECPEP	A375_MHC_IP_R2	2	517.2819213867188	2	517.724904	1033.43525	-1.1268	-0.00058335	-0.21468	-0.00011115	-1.3414	-0.0006945	517.7247741187524	24.796	0.86565	25.439	25.212	26.078	0.64368					41	16	4	0	0	0	0.010923	1	8221	8221		141.83	105.78	1	99450000			13453	8652	9747	9823	13108	13108					-0.08012593966736858
EVDPYGPFT	9	Unmodified	_EVDPYGPFT_					0	0	0			REV__IQCA1|p.D317G|1|1.0|ENSG00000132321|chr2:236441101-236441101|T/C|missense_variant	REV__IQCA1|p.D317G|1|1.0|ENSG00000132321|chr2:236441101-236441101|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	511.98858642578125	2	512.73474	1023.45493	-0.72112	-0.00036974	0.42648	0.00021867	-0.29464	-0.00015107	512.7342099807389	36.902	0.86195	36.902	36.439	37.301	0					21	16	2	0	0	0	0.43707	1	12427	12427		21.747	8.2388	1	1508400	+		13454	26798	9748	9824	13109	13109					-0.05586217955999473
EVDRFVVSYV	10	Unmodified	_EVDRFVVSYV_					0	0	0		nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB	nc|ENSG00000168477|P22105-1|TNXB	nc|ENSG00000168477|P22105-1|TNXB	MULTI-MSMS	A375_MHC_IP_R1	1	405.27996826171875	3	404.880156	1211.61864	-0.21335	-8.6383E-05	0.29567	0.00011971	0.082321	3.333E-05	404.880270960725	42.821	2.1899	42.821	42.487	44.676	0					120	42	5	0	0	0	0.49952	1	15274	15274		28.234	1.1452	1	142990000			13455	7306	9749	9825	13110	13110					0.02129379814891763
EVDRNLIQY	9	Unmodified	_EVDRNLIQY_					0	0	0		ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000150893|Q5SZK8-2|FREM2	ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	MULTI-SECPEP	A375_MHC_IP_R2	2	575.697509765625	2	575.29857	1148.58259	-0.37929	-0.0002182	-0.69017	-0.00039705	-1.0695	-0.00061526	575.2980694025954	54.698	0.40713	55.448	55.219	55.626	0.75075					18	7	3	0	0	0	0.41434	1	20627	20627		39.95	5.548	1	3759600			13456	5867	9750	9826	13111	13111					0.014239226380595937
EVDRNLIQY	9	Unmodified	_EVDRNLIQY_					0	0	0		ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000150893|Q5SZK8-2|FREM2	ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	MULTI-MATCH	A375_MHC_IP_R1	1		2	575.29857	1148.58259	-0.1785	-0.00010269	-0.98409	-0.00056615	-1.1626	-0.00066884	575.2978642334019	55.406	0.51	55.406	55.177	55.687	0	-0.021242	-0.0001896	NaN	47.749	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4534900			13457	5867	9750	9826							0.014239226380595937
EVDSGRQIEY	10	Unmodified	_EVDSGRQIEY_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-MSMS	A375_MHC_IP_R1	1	598.682861328125	2	598.283117	1194.55168	-0.64223	-0.00038424	0.12629	7.5559E-05	-0.51594	-0.00030868	598.2833008682688	32.567	0.40229	32.567	32.383	32.785	0					13	7	3	0	0	0	0.0089867	1	10554	10554		107.56	73.461	1	4823300			13458	3145	9751	9827	13112	13112					-0.03781275466849365
EVDSGRQIEY	10	Unmodified	_EVDSGRQIEY_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-MSMS	A375_MHC_IP_R2	2	598.6829223632812	2	598.283117	1194.55168	-0.55312	-0.00033092	0.20295	0.00012142	-0.35017	-0.0002095	598.2833495775468	31.942	0.40435	32.679	32.504	32.909	0.73691					17	7	3	0	0	0	0.0089867	1	11357	11357		107.56	73.461	1	3172900			13459	3145	9751	9827	13113	13113					-0.03781275466849365
EVDSRWQEY	9	Unmodified	_EVDSRWQEY_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;ENST00000485063.1_1_1:39748843-39749872:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	A375_MHC_IP_R1	1	606.669677734375	2	606.27001	1210.52547	-0.012958	-7.8562E-06	-0.01382	-8.3786E-06	-0.026778	-1.6235E-05	606.2699294736458	45.44	0.60637	45.44	45.03	45.636	0					21	11	3	0	0	0	0.070665	1	15938	15938		78.728	78.728	1	2445000			13460	4099;14587	9752	9828	13114	13114					-0.07137544638339932
EVDSRWQEY	9	Unmodified	_EVDSRWQEY_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;ENST00000485063.1_1_1:39748843-39749872:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	A375_MHC_IP_R2	2	606.2223510742188	2	606.27001	1210.52547	-0.24907	-0.00015101	1.6777	0.0010171	1.4286	0.00086614	606.7740288661262	93.754	0.9108	94.499	94.109	95.02	0.74474					42	17	3	0	0	0	0.55818	1	35676	35676		16.942	4.4107	1	1849700			13461	4099;14587	9752	9828	13115	13115					-0.07137544638339932
EVDSRWQEY	9	Unmodified	_EVDSRWQEY_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;ENST00000485063.1_1_1:39748843-39749872:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	A375_MHC_IP_R2	2	606.6693115234375	2	606.27001	1210.52547	-0.53938	-0.00032701	0.48787	0.00029578	-0.051506	-3.1227E-05	606.2699692380781	44.823	0.56146	45.592	45.289	45.85	0.7691					17	10	2	0	0	0	0.0575	1	16734	16734		86.332	59.448	1	2525800			13462	4099;14587	9752	9828	13116	13116					-0.07137544638339932
EVDTLGWSAM	10	Unmodified	_EVDTLGWSAM_					0	0	0		ENST00000515477.5_1_5:87517271-87564570:-|nuORF	ENST00000515477.5_1_5:87517271-87564570:-|nuORF	ENST00000515477.5_1_5:87517271-87564570:-|nuORF	MSMS	A375_MHC_IP_R1	1	554.7032470703125	2	554.752607	1107.49066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.989	1	48.989	48.489	49.489	0								0	0	0	0.15308	1	17308	17308		10.824	0.75	1				13463	12950	9753	9829	13117	13117					-0.05878503770645693
EVDWKIMERR	10	Unmodified	_EVDWKIMERR_					0	0	0		ENST00000481129.1_2_10:102758516-102758672:+|nuORF	ENST00000481129.1_2_10:102758516-102758672:+|nuORF	ENST00000481129.1_2_10:102758516-102758672:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	455.1271057128906	3	454.571328	1360.69215	-0.43995	-0.00019999	-0.08833	-4.0152E-05	-0.52828	-0.00024014	454.57133073813037	35.552	0.40496	36.315	36.132	36.537	0.76338					14	7	3	0	0	0	0.93873	1	12957	12957		5.0475	5.0475	1	1759800			13464	12508	9754	9830	13118	13118					0.026236049857061516
EVDYNLEPF	9	Unmodified	_EVDYNLEPF_					0	0	0		nc|ENSG00000131620|Q5XXA6-4|ANO1;nc|ENSG00000131620|Q5XXA6-2|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1	nc|ENSG00000131620|Q5XXA6-4|ANO1	nc|ENSG00000131620|Q5XXA6-4|ANO1	MULTI-SECPEP	A375_MHC_IP_R2	2	376.24163818359375	3	375.841478	1124.50261	-0.006235	-2.3434E-06	2.4852	0.00093405	2.479	0.0009317	375.8417784520754	41.11	0.35544	41.884	41.692	42.047	0.77451					15	6	3	0	0	0	0.74412	1	15248	15248		10.151	3.9587	1	4087400			13465	14603	9755	9831	13119	13119					-0.05466563755817333
EVEATHPSP	9	Unmodified	_EVEATHPSP_					0	0	0			REV__nc|ENSG00000126562|Q96J92-3|WNK4	REV__nc|ENSG00000126562|Q96J92-3|WNK4	MULTI-MSMS	A375_MHC_IP_R1	1	484.1296691894531	2	483.729989	965.445425	-0.29125	-0.00014089	0.22915	0.00011084	-0.062102	-3.0041E-05	483.73005419989914	43.727	0.8656	43.727	43.351	44.216	0					48	16	4	0	0	0	0.22528	1	15379	15379		36.127	2.0246	1	45148000	+		13466	18389	9756	9832	13120	13120					-0.03867986241516519
EVECNYHCY	9	Unmodified	_EVECNYHCY_					0	0	0		ENSG00000162377|ENST00000371538|COA7	ENSG00000162377|ENST00000371538|COA7	ENSG00000162377|ENST00000371538|COA7	MULTI-MSMS	A375_MHC_IP_R2	2	580.1768188476562	2	580.212792	1158.41103	-0.28675	-0.00016638	3.9796	0.002309	3.6929	0.0021427	580.2156563079949	76.871	0.30382	77.614	77.404	77.707	0.74293					7	5	2	0	0	0	0.69674	1	29192	29192		7.2892	0	1	526420			13467	6521	9757	9833	13121	13121					-0.16183893716288367
EVEDMEYFYRH	11	Unmodified	_EVEDMEYFYRH_					0	0	0			REV__ENSG00000112200|ENST00000370706|ZNF451	REV__ENSG00000112200|ENST00000370706|ZNF451	MSMS	A375_MHC_IP_R1	1	759.2903442382812	2	759.321916	1516.62928	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.25	1	125.25	124.75	125.75	0								0	0	0	0.16297	1	47546	47546		3.2813	1.9518	1		+		13468	17716	9758	9834	13122	13122					-0.10837005592975402
EVEDVDTAAET	11	Unmodified	_EVEDVDTAAET_					0	0	0		ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MSMS	A375_MHC_IP_R2	2	589.804931640625	2	589.756598	1177.49864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.429	1	88.161	87.661	88.661	0.7318								0	0	0	0.16258	1	33251	33251		5.2969	0.54088	1				13469	1572	9759	9835	13123	13123					-0.08300698040170573
EVEERVDV	8	Unmodified	_EVEERVDV_					0	0	0		tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1	tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1	tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	488.46881103515625	2	487.743096	973.47164	-0.89819	-0.00043809	-0.9477	-0.00046223	-1.8459	-0.00090032	487.7432957242413	61.318	0.35384	62.063	61.869	62.223	0.74503					10	6	2	0	0	0	0.972	1	23171	23171		8.5933	6.5335	1	1186300			13470	29996	9760	9836	13124	13124					-0.016157170700353163
EVEESDEESD	10	Unmodified	_EVEESDEESD_					0	0	0			REV__ENST00000569487.1_1_16:87741959-87742978:-|nuORF	REV__ENST00000569487.1_1_16:87741959-87742978:-|nuORF	MSMS	A375_MHC_IP_R1	1	584.197265625	2	584.21222	1166.40989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.252	1	92.252	91.752	92.752	0								0	0	0	0.1552	1	33901	33901		3.9444	0.3479	1		+		13471	17334	9761	9837	13125	13125					-0.16666158070506754
EVEHLFKIIK	10	Unmodified	_EVEHLFKIIK_					0	0	0		tr|U7STY4|U7STY4_FUSNURibose/galactose/methylgalactosideimportATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01610PE=3SV=1	tr|U7STY4|U7STY4_FUSNURibose/galactose/methylgalactosideimportATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01610PE=3SV=1	tr|U7STY4|U7STY4_FUSNURibose/galactose/methylgalactosideimportATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01610PE=3SV=1	MSMS	A375_MHC_IP_R1	1	628.4373168945312	2	628.374081	1254.73361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.83	1	135.83	135.33	136.33	0								0	0	0	0.15531	1	52342	52342		3.5965	0.31518	1				13472	29726	9762	9838	13126	13126					0.11643109016722519
EVEHNNEKYVA	11	Unmodified	_EVEHNNEKYVA_					0	0	0		nc|ENSG00000215018|Q2UY09-3|COL28A1	nc|ENSG00000215018|Q2UY09-3|COL28A1	nc|ENSG00000215018|Q2UY09-3|COL28A1	MULTI-MSMS	A375_MHC_IP_R2	2	444.9451599121094	3	444.545724	1330.61534	-0.69748	-0.00031006	0.55333	0.00024598	-0.14415	-6.4081E-05	444.54558604117983	23.24	0.76167	23.87	23.521	24.283	0.63014					41	14	5	0	0	0	0.72577	1	7437	7437		12.929	2.9124	1	56246000			13473	14900	9763	9839	13127	13127					-0.03673915029753516
EVEHNNEKYVA	11	Unmodified	_EVEHNNEKYVA_					0	0	0		nc|ENSG00000215018|Q2UY09-3|COL28A1	nc|ENSG00000215018|Q2UY09-3|COL28A1	nc|ENSG00000215018|Q2UY09-3|COL28A1	MULTI-MSMS	A375_MHC_IP_R2	2	666.7149658203125	2	666.314948	1330.61534	-1.1389	-0.00075886	0.1608	0.00010714	-0.9781	-0.00065172	666.3152730989282	23.223	0.30373	23.853	23.726	24.029	0.63014					7	5	2	0	0	0	0.7328	1	7470	7470		4.5289	0	1	3639600			13474	14900	9763	9839	13128	13128					-0.03673915029753516
EVEHNNEKYVA	11	Unmodified	_EVEHNNEKYVA_					0	0	0		nc|ENSG00000215018|Q2UY09-3|COL28A1	nc|ENSG00000215018|Q2UY09-3|COL28A1	nc|ENSG00000215018|Q2UY09-3|COL28A1	MULTI-MATCH	A375_MHC_IP_R1	1		2	666.314948	1330.61534	-0.86922	-0.00057917	0.98031	0.00065319	0.11109	7.4019E-05	666.3147679557769	23.64	0.25454	23.64	23.483	23.737	0	-0.10673	0.00057141	NaN	4.5289	11	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6206300			13475	14900	9763	9839							-0.03673915029753516
EVEISRPRLKI	11	Unmodified	_EVEISRPRLKI_					0	0	0			REV__nc|ENSG00000147010|Q96B97-2|SH3KBP1	REV__nc|ENSG00000147010|Q96B97-2|SH3KBP1	MULTI-MSMS	A375_MHC_IP_R1	1	670.8052978515625	2	670.406444	1338.79833	-0.91835	-0.00061567	-0.34845	-0.00023361	-1.2668	-0.00084927	670.4060527769533	137.1	0.77065	137.1	136.92	137.69	0					29	14	3	0	0	0	0.73679	1	52789	52789		5.2969	2.3016	1	9833300	+		13476	19562	9764	9840	13129	13129					0.1424868382268869
EVEKVIDNKFS	11	Unmodified	_EVEKVIDNKFS_					0	0	0			REV__tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1	REV__tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	436.9662170410156	3	436.566237	1306.67688	-0.30907	-0.00013493	-0.29223	-0.00012758	-0.6013	-0.00026251	436.5662168863435	33.004	0.40507	33.004	32.734	33.14	0					19	7	3	0	0	0	0.63742	1	10716	10716		20.411	8.7795	1	3955000	+		13477	28390	9765	9841	13130	13130					0.03581016669522796
EVEKVIDNKFS	11	Unmodified	_EVEKVIDNKFS_					0	0	0			REV__tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1	REV__tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	436.966064453125	3	436.566237	1306.67688	-0.31242	-0.00013639	-0.58254	-0.00025432	-0.89496	-0.00039071	436.5661906965817	32.274	0.30493	33.011	32.857	33.162	0.73691					15	5	3	0	0	0	0.50979	1	11493	11493		30.354	10.367	1	4990800	+		13478	28390	9765	9841	13131	13131					0.03581016669522796
EVEKVIDNKFS	11	Unmodified	_EVEKVIDNKFS_					0	0	0			REV__tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1	REV__tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	436.566237	1306.67688	-0.30907	-0.00013493	-0.29223	-0.00012758	-0.6013	-0.00026251	436.5662168863435	33.004	0.40507	33.004	32.734	33.14	0	-0.0033199	0.00016779	NaN	30.354	19	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3955000	+		13479	28390	9765	9841							0.03581016669522796
EVEKVIDNKFS	11	Unmodified	_EVEKVIDNKFS_					0	0	0			REV__tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1	REV__tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	436.566237	1306.67688	-0.31242	-0.00013639	-0.58254	-0.00025432	-0.89496	-0.00039071	436.5661906965817	32.274	0.30493	33.011	32.857	33.162	0.73691	0.0033199	-0.00021243	NaN	30.354	15	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4990800	+		13480	28390	9765	9841							0.03581016669522796
EVENPGHCDFV	11	Unmodified	_EVENPGHCDFV_					0	0	0		ENST00000426861.5_1_17:56598198-56599363:-|nuORF;nc|ENSG00000108387|O43236-5|SEPTIN4;nc|ENSG00000108387|O43236-2|SEPTIN4;ENST00000577440.5_1_17:56598198-56609324:-|nuORF;nc|ENSG00000108387|O43236-3|SEPTIN4;nc|ENSG00000108387|O43236|SEPTIN4;nc|ENSG00000108387|O43236-4|SEPTIN4;ENST00000584488.5_1_17:56598198-56606616:-|nuORF;ENSG00000108387|ENST00000672673|SEPTIN4	ENST00000426861.5_1_17:56598198-56599363:-|nuORF	ENST00000426861.5_1_17:56598198-56599363:-|nuORF	MSMS	A375_MHC_IP_R2	2	623.2654418945312	2	623.26387	1244.51319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.11	1	103.87	103.37	104.37	0.76428								0	0	0	0.1624	1	39052	39052		6.2058	2.2614	1				13481	2796	9766	9842	13132	13132					-0.0992890437303231
EVENSNIVVF	10	Unmodified	_EVENSNIVVF_					0	0	0			REV__tr|U7STY8|U7STY8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01035PE=4SV=1	REV__tr|U7STY8|U7STY8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01035PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	383.63275146484375	3	383.864394	1148.57135	0.32676	0.00012543	4.3312	0.0016626	4.658	0.001788	383.86491293695127	33.566	0.2543	33.566	33.393	33.648	0					6	4	2	0	0	0	0.91556	1	10956	10956		8.9762	1.3673	1	735690	+		13482	28519	9767	9843	13133	13133					0.003011005439020664
EVEPRLVY	8	Unmodified	_EVEPRLVY_					0	0	0		ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	MSMS	A375_MHC_IP_R1	1	502.6981506347656	2	502.7742	1003.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.593	1	52.593	52.093	53.093	0								0	0	0	0.16876	1	18712	18712		23.148	5.0021	1				13483	2238	9768	9844	13134	13134					0.032220540689422705
EVEQVPTAEE	10	Unmodified	_EVEQVPTAEE_					0	0	0			REV__AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant	REV__AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	565.6798095703125	2	565.764226	1129.5139	-0.24812	-0.00014038	-0.36822	-0.00020833	-0.61635	-0.00034871	565.7637040531305	45.777	0.66051	45.777	45.534	46.195	0					19	12	2	0	0	0	0.69306	1	16136	16136		13.906	0.39817	1	1855500	+		13484	15348	9769	9845	13135	13135					-0.04567786452321343
EVEREISFRT	10	Unmodified	_EVEREISFRT_					0	0	0		ENSG00000178904|ENST00000392250|DPY19L3;nc|ENSG00000178904|Q6ZPD9-2|DPY19L3	ENSG00000178904|ENST00000392250|DPY19L3	ENSG00000178904|ENST00000392250|DPY19L3	MULTI-SECPEP	A375_MHC_IP_R2	2	422.954345703125	3	422.554331	1264.64116	0.015917	6.7257E-06	0.028221	1.1925E-05	0.044138	1.8651E-05	422.55440165273416	43.318	0.45671	44.09	43.926	44.383	0.7724					11	8	2	0	0	0	0.92055	1	16195	16195		12.228	1.9124	1	1983400			13485	8185	9770	9846	13136	13136					0.01942979212526552
EVERERELPP	10	Unmodified	_EVERERELPP_					0	0	0		nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2	nc|ENSG00000164889|P04920-2|SLC4A2	nc|ENSG00000164889|P04920-2|SLC4A2	MULTI-SECPEP	A375_MHC_IP_R2	2	418.9629821777344	3	418.554331	1252.64116	-0.32963	-0.00013797	0.20321	8.5055E-05	-0.12642	-5.2914E-05	418.5545427619575	18.967	0.23048	19.57	19.452	19.683	0.60308					6	4	2	0	0	0	0.91932	1	5744	5744		7.9454	0	1	3392800			13486	6890	9771	9847	13137	13137					0.024949792125198655
EVERYFNNY	9	Unmodified	_EVERYFNNY_					0	0	0			REV__tr|U7SIY9|U7SIY9_FUSNUDelta-aminolevulinicaciddehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02281PE=3SV=1	REV__tr|U7SIY9|U7SIY9_FUSNUDelta-aminolevulinicaciddehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02281PE=3SV=1	MSMS	A375_MHC_IP_R2	2	617.177001953125	2	617.280377	1232.5462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.816	1	48.577	48.077	49.077	0.76128								0	0	0	0.15486	1	17941	17941		7.9102	1.187	1		+		13487	28220	9772	9848	13138	13138					-0.060769542586513126
EVESPLNPS	9	Unmodified	_EVESPLNPS_					0	0	0		nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;ENST00000489243.5_1_9:6758133-6893415:+|nuORF	nc|ENSG00000293552|Q9H3R0-3|KDM4C	nc|ENSG00000293552|Q9H3R0-3|KDM4C	MSMS	A375_MHC_IP_R1	1	486.14495849609375	2	486.237647	970.460741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.167	1	41.167	40.667	41.667	0								0	0	0	0.11922	1	14198	14198		36.127	3.3413	1				13488	2723	9773	9849	13139	13139					-0.02567119444324817
EVESPLNPS	9	Unmodified	_EVESPLNPS_					0	0	0		nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;ENST00000489243.5_1_9:6758133-6893415:+|nuORF	nc|ENSG00000293552|Q9H3R0-3|KDM4C	nc|ENSG00000293552|Q9H3R0-3|KDM4C	MSMS	A375_MHC_IP_R2	2	486.14569091796875	2	486.237647	970.460741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.47	1	41.244	40.744	41.744	0.77451								0	0	0	0.11922	1	14987	14987		36.127	0	1				13489	2723	9773	9849	13140	13140					-0.02567119444324817
EVETVENW	8	Unmodified	_EVETVENW_					0	0	0			REV__ENST00000341469.6_1_9:100848248-100848425:-|nuORF	REV__ENST00000341469.6_1_9:100848248-100848425:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	502.6640625	2	503.229822	1004.44509	0.089326	4.4951E-05	-0.75644	-0.00038067	-0.66712	-0.00033571	503.22933870912306	48.832	0.65769	48.832	48.526	49.184	0					20	12	3	0	0	0	0.77603	1	17314	17314		9.3474	0	1	2383400	+		13490	23734	9774	9850	13141	13141					-0.056954059613758545
EVFEDYMFQ	9	Unmodified	_EVFEDYMFQ_					0	0	0			REV__RALA|p.D42N|1|0.12|ENSG00000006451|chr7:39690391-39690391|G/A|missense_variant	REV__RALA|p.D42N|1|0.12|ENSG00000006451|chr7:39690391-39690391|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	604.2694702148438	2	604.25244	1206.49033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.757	1	64.757	64.257	65.257	0								0	0	0	0.15486	1	23436	23436		7.9102	0	1		+		13491	16135	9775	9851	13142	13142					-0.10465923490482965
EVFFRIERFD	10	Unmodified	_EVFFRIERFD_					0	0	0			REV__PLCG2|p.S957F|1|0.08|ENSG00000197943|chr16:81936196-81936196|C/T|missense_variant	REV__PLCG2|p.S957F|1|0.08|ENSG00000197943|chr16:81936196-81936196|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	679.1198120117188	2	679.348594	1356.68264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.136	1	96.136	95.636	96.636	0								0	0	0	0.15353	1	35333	35333		9.3831	0	1		+		13492	27796	9776	9852	13143	13143					0.018561599718395883
EVFIRRTGGF	10	Unmodified	_EVFIRRTGGF_					0	0	0		ADGRV1|p.L5244F|1|0.48|ENSG00000164199|chr5:90810990-90810990|C/T|missense_variant	ADGRV1|p.L5244F|1|0.48|ENSG00000164199|chr5:90810990-90810990|C/T|missense_variant	ADGRV1|p.L5244F|1|0.48|ENSG00000164199|chr5:90810990-90810990|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	591.400146484375	2	591.324922	1180.63529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.127	1	92.127	91.627	92.627	0								0	0	0	0.15417	1	33854	33854		7.2892	0	1				13493	73	9777	9853	13144	13144					0.052199254915194615
EVFKWLIPD	9	Unmodified	_EVFKWLIPD_					0	0	0		nc|ENSG00000167968|Q92874-2|DNASE1L2;ENSG00000167968|ENST00000320700|DNASE1L2	nc|ENSG00000167968|Q92874-2|DNASE1L2	nc|ENSG00000167968|Q92874-2|DNASE1L2	MULTI-SECPEP	A375_MHC_IP_R2	2	573.3712768554688	2	573.813325	1145.6121	-0.53812	-0.00030878	-0.50972	-0.00029249	-1.0478	-0.00060127	573.8129708728558	60.998	0.65611	61.743	61.566	62.223	0.74503					17	12	2	0	0	0	0.59098	1	23203	23203		11.495	0	1	2814600			13494	7243	9778	9854	13145	13145					0.04511486654178043
EVFLFFSKI	9	Unmodified	_EVFLFFSKI_					0	0	0		ENSG00000153292|ENST00000371253|ADGRF1	ENSG00000153292|ENST00000371253|ADGRF1	ENSG00000153292|ENST00000371253|ADGRF1	MSMS	A375_MHC_IP_R2	2	565.419189453125	2	565.318243	1128.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.167	1	79.911	79.411	80.411	0.74474								0	0	0	0.15135	1	30043	30043		20.454	4.6064	1				13495	6024	9779	9855	13146	13146					0.0627667465957984
EVFLRGAAI	9	Unmodified	_EVFLRGAAI_					0	0	0			REV__nc|ENSG00000144908|O75891-2|ALDH1L1	REV__nc|ENSG00000144908|O75891-2|ALDH1L1	MULTI-SECPEP	A375_MHC_IP_R1	1	488.1606750488281	2	488.284734	974.554916	-0.15934	-7.7803E-05	0.38058	0.00018583	0.22124	0.00010803	488.2853301248649	62.685	0.40941	62.685	62.403	62.813	0					9	7	2	0	0	0	0.71541	1	22631	22631		11.64	0	1	514090	+		13496	19455	9780	9856	13147	13147					0.06662064168460802
EVFQQLYVKFF	11	Unmodified	_EVFQQLYVKFF_					0	0	0		VSNL1|p.E47V|1|0.1|ENSG00000163032|chr2:17592214-17592214|A/T|missense_variant	VSNL1|p.E47V|1|0.1|ENSG00000163032|chr2:17592214-17592214|A/T|missense_variant	VSNL1|p.E47V|1|0.1|ENSG00000163032|chr2:17592214-17592214|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	482.62152099609375	3	483.258856	1446.75474	-0.95192	-0.00046002	-1.3966	-0.00067491	-2.3485	-0.0011349	483.59287756278775	57.295	0.25372	58.044	57.917	58.17	0.74894					6	4	2	0	0	0	0.99883	1	21699	21699		1.2148	0	1	1145000			13497	30151	9781	9857	13148	13148					0.04923074325552079
EVFQVSQEGA	10	Unmodified	_EVFQVSQEGA_					0	0	0		nc|ENSG00000156219|Q13508-2|ART3;ENST00000513494.5_1_4:76997042-77020397:+|nuORF;nc|ENSG00000156219|Q13508-3|ART3;ENSG00000156219|ENST00000355810|ART3	nc|ENSG00000156219|Q13508-2|ART3	nc|ENSG00000156219|Q13508-2|ART3	MULTI-SECPEP	A375_MHC_IP_R2	2	546.6897583007812	2	547.261653	1092.50875	-0.84914	-0.0004647	-1.704	-0.00093256	-2.5532	-0.0013973	547.7618932101232	65.122	0.71124	65.86	65.511	66.222	0.73811					19	13	2	0	0	0	0.87043	1	24763	24763		15.248	5.8654	1	1307800			13498	6182	9782	9858	13149	13149					-0.03380045524272646
EVFRQKKKIHL	11	Unmodified	_EVFRQKKKIHL_					0	0	0		nc|ENSG00000273345|Q8IVW4-2|CDKL3;ENSG00000006837|ENST00000265334|CDKL3	nc|ENSG00000273345|Q8IVW4-2|CDKL3	nc|ENSG00000273345|Q8IVW4-2|CDKL3	MULTI-SECPEP	A375_MHC_IP_R2	2	475.6334533691406	3	475.961144	1424.8616	-0.38447	-0.00018299	0.0092093	4.3833E-06	-0.37526	-0.00017861	475.96109203228144	86.359	0.91745	87.092	86.642	87.56	0.73301					26	17	2	0	0	0	0.99606	1	32955	32955		1.3296	0.87513	1	1721500			13499	933	9783	9859	13150	13150					0.16616669330619516
EVFSTCKWY	9	Unmodified	_EVFSTCKWY_					0	0	0			REV__ENST00000497626.1_1_7:95661984-95685193:+|nuORF	REV__ENST00000497626.1_1_7:95661984-95685193:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	582.6674194335938	2	581.765517	1161.51648	-0.19426	-0.00011302	0.9857	0.00057345	0.79144	0.00046043	582.2671157163364	79.447	3	79.447	79.011	82.011	0					89	58	3	0	0	0	0.55818	1	29182	29182		16.942	5.302	1	6906900	+		13500	25470	9784	9860	13151	13151					-0.05781609528366971
EVFVGGRW	8	Unmodified	_EVFVGGRW_					0	0	0		ENSG00000182218|ENST00000330710|HHIPL1	ENSG00000182218|ENST00000330710|HHIPL1	ENSG00000182218|ENST00000330710|HHIPL1	MULTI-SECPEP	A375_MHC_IP_R2	2	474.6322021484375	2	475.248152	948.481751	-0.70805	-0.0003365	-0.19484	-9.2597E-05	-0.90289	-0.0004291	475.24789926075135	32.955	1.3721	33.692	33.162	34.534	0.73691					38	26	2	0	0	0	0.93661	1	12094	12094		21.747	12.399	1	1392600			13501	8389	9785	9861	13152	13152					0.005449354458619382
EVFWQKFRQFS	11	Unmodified	_EVFWQKFRQFS_					0	0	0		ZSCAN30|p.R48W|1|0.46|ENSG00000186814|chr18:35264211-35264211|G/A|missense_variant	ZSCAN30|p.R48W|1|0.46|ENSG00000186814|chr18:35264211-35264211|G/A|missense_variant	ZSCAN30|p.R48W|1|0.46|ENSG00000186814|chr18:35264211-35264211|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	751.3527221679688	2	751.382968	1500.75138	-0.46343	-0.00034821	-4.3756	-0.0032877	-4.839	-0.0036359	751.3793463140889	118.5	0.20253	118.5	118.42	118.63	0					5	3	2	0	0	0	0.72869	1	43699	43699		10.151	4.4187	1	23743000			13502	30255	9786	9862	13153	13153					0.021038242715576416
EVGAATPCRLP	11	Unmodified	_EVGAATPCRLP_					0	0	0			REV__ENST00000367145.3_1_1:205633820-205633997:-|nuORF	REV__ENST00000367145.3_1_1:205633820-205633997:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	372.601318359375	3	371.862219	1112.56483	0.57489	0.00021378	-0.24193	-8.9964E-05	0.33296	0.00012382	371.8621965319007	47.745	0.50456	48.506	48.378	48.883	0.76128					18	9	3	0	0	0	0.95991	1	18055	18055		7.0371	0	1	4421500	+		13503	23958	9787	9863	13154	13154					0.013048841115278265
EVGCDDECTC	10	Unmodified	_EVGCDDECTC_					0	0	0			REV__tr|U7SPW4|U7SPW4_FUSNURNApolymerasesporulation-specificsigmafactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01725PE=4SV=1	REV__tr|U7SPW4|U7SPW4_FUSNURNApolymerasesporulation-specificsigmafactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01725PE=4SV=1	MSMS	A375_MHC_IP_R2	2	537.149169921875	2	537.16465	1072.31475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.823	1	61.568	61.068	62.068	0.74503								0	0	0	0.15596	1	23038	23038		1.4819	0.68827	1		+		13504	28367	9788	9864	13155	13155					-0.21851829338538664
EVGDISESDLL	11	Unmodified	_EVGDISESDLL_					0	0	0		ENSG00000151005|ENST00000280605|TKTL2	ENSG00000151005|ENST00000280605|TKTL2	ENSG00000151005|ENST00000280605|TKTL2	MSMS	A375_MHC_IP_R1	1	588.7180786132812	2	588.785158	1175.55576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.378	1	93.378	92.878	93.878	0								0	0	0	0.15541	1	34324	34324		17.113	4.8722	1				13505	5873	9789	9865	13156	13156					-0.02499230763783089
EVGEEGHKE	9	Unmodified	_EVGEEGHKE_					0	0	0			REV__ENSG00000146476|ENST00000367294|ARMT1	REV__ENSG00000146476|ENST00000367294|ARMT1	MULTI-MSMS	A375_MHC_IP_R2	2	507.7084655761719	2	507.230353	1012.44615	-1.0389	-0.00052697	0.026242	1.3311E-05	-1.0127	-0.00051366	507.2302940721026	34.161	2.1775	34.914	34.399	36.576	0.75225					105	42	4	0	0	0	0.70307	1	12184	12184		6.7232	6.7232	1	40216000	+		13506	19540	9790	9866	13157	13157					-0.05957191592460731
EVGEMQPKEEK	11	Unmodified	_EVGEMQPKEEK_					0	0	0			REV__ENST00000549438.1_1_12:56522449-56522608:-|nuORF	REV__ENST00000549438.1_1_12:56522449-56522608:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	435.4032287597656	3	435.211465	1302.61257	-0.48984	-0.00021318	0.70366	0.00030624	0.21381	9.3054E-05	435.211435670248	35.036	0.30248	35.799	35.576	35.878	0.76338					7	5	2	0	0	0	0.99732	1	12664	12664		2.2527	2.1128	1	865830	+		13507	26028	9791	9867	13158	13158					-0.026635064789161333
EVGESSDEEPV	11	Unmodified	_EVGESSDEEPV_					0	0	0		ENST00000524852.1_1_11:6340395-6340857:-|nuORF;ENST00000532354.1_1_11:6340395-6341123:-|nuORF;ENSG00000170955|ENST00000303927|CAVIN3	ENST00000524852.1_1_11:6340395-6340857:-|nuORF	ENST00000524852.1_1_11:6340395-6340857:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	589.148193359375	2	588.748773	1175.48299	0.054649	3.2175E-05	-1.1874	-0.00069906	-1.1327	-0.00066689	588.7482752275344	112.7	0.81342	112.7	112.23	113.04	0					18	14	2	0	0	0	0.92455	1	41310	41310		21.537	5.3879	1	2501000			13508	7563	9792	9868	13159	13159					-0.09772984557230302
EVGFHSTRPRT	11	Unmodified	_EVGFHSTRPRT_					0	0	0			REV__ENST00000406687.5_1_2:54013870-54014047:-|nuORF	REV__ENST00000406687.5_1_2:54013870-54014047:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	429.29058837890625	3	429.558187	1285.65273	-0.53027	-0.00022778	2.0589	0.0008844	1.5286	0.00065662	429.55867895499125	61.42	0.65454	62.165	61.819	62.473	0.74503					16	12	2	0	0	0	0.9907	1	23176	23176		9.2438	5.1271	1	630580	+		13509	24447	9793	9869	13160	13160					0.021332210264972673
EVGFRVPSV	9	Unmodified	_EVGFRVPSV_					0	0	0		nc|ENSG00000105227|Q9BXM0-3|PRX;ENST00000291825.11_2_19:40899875-40904000:-|nuORF;ENSG00000105227|ENST00000324001|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	MULTI-SECPEP	A375_MHC_IP_R1	1	494.7075500488281	2	495.274367	988.53418	-0.30846	-0.00015277	0.13212	6.5435E-05	-0.17634	-8.7336E-05	495.2741902075561	91.982	0.30286	91.982	91.756	92.059	0					8	5	2	0	0	0	0.71541	1	33727	33727		3.9444	0	1	706970			13510	2579	9794	9870	13161	13161					0.03945473788803611
EVGGLALVFY	10	Unmodified	_EVGGLALVFY_					0	0	0			REV__nc|ENSG00000168126|Q8NHA6|OR2W6P	REV__nc|ENSG00000168126|Q8NHA6|OR2W6P	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1190795898438	2	534.292225	1066.5699	-1.0813	-0.00057772	-3.4098	-0.0018219	-4.4911	-0.0023996	534.2901772485975	36.531	0.45667	37.301	36.953	37.41	0.7709					11	8	2	0	0	0	0.90853	1	13257	13257		6.7232	0	1	2252100	+		13511	27346	9795	9871	13162	13162					0.039275112458199146
EVGHNDLVY	9	Unmodified	_EVGHNDLVY_					0	0	0		LINGO2|p.D162H|1|0.26|ENSG00000174482|chr9:27950188-27950188|C/G|missense_variant	LINGO2|p.D162H|1|0.26|ENSG00000174482|chr9:27950188-27950188|C/G|missense_variant	LINGO2|p.D162H|1|0.26|ENSG00000174482|chr9:27950188-27950188|C/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	524.676513671875	2	523.251089	1044.48762	-0.72321	-0.00037842	0.12184	6.3753E-05	-0.60137	-0.00031467	523.2511705702353	26.903	2.017	26.903	26.474	28.491	0					88	39	5	0	0	0	0.55471	1	8048	8048		17.113	2.2746	1	280510000			13512	14301	9796	9872	13163	13163					-0.032840108331583906
EVGLSKNPSV	10	Unmodified	_EVGLSKNPSV_					0	0	0		ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MSMS	A375_MHC_IP_R1	1	515.2892456054688	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.364	1	64.364	63.864	64.864	0								0	0	0	0.15136	1	23284	23284		15.248	3.0737	1				13513	1572	9797	9873	13164	13164					0.03709135235044414
EVGMRFQV	8	Unmodified	_EVGMRFQV_					0	0	0		nc|ENSG00000143515|P98198-4|ATP8B2;ENST00000426445.1_1_1:154301436-154313374:+|nuORF;nc|ENSG00000143515|P98198-2|ATP8B2;ENSG00000143515|ENST00000368489|ATP8B2;nc|ENSG00000143515|P98198|ATP8B2;nc|ENSG00000143515|P98198-3|ATP8B2	nc|ENSG00000143515|P98198-4|ATP8B2	nc|ENSG00000143515|P98198-4|ATP8B2	MULTI-SECPEP	A375_MHC_IP_R1	1	482.6595458984375	2	483.247295	964.480036	-0.070265	-3.3955E-05	1.0721	0.00051808	1.0018	0.00048413	483.24774005138846	108.77	0.70937	108.77	108.56	109.27	0					29	13	3	0	0	0	0.86765	1	39872	39872		32.117	20.477	1	3436900			13514	5404	9798	9874	13165	13165					-0.0036244163441097044
EVGSCTFLLL	10	Unmodified	_EVGSCTFLLL_					0	0	0			REV__ENSG00000126709|ENST00000361157|IFI6	REV__ENSG00000126709|ENST00000361157|IFI6	MULTI-MSMS	A375_MHC_IP_R1	1	541.7003173828125	2	541.283543	1080.55253	-0.58668	-0.00031756	0.42216	0.00022851	-0.16451	-8.9047E-05	541.2835926358957	96.452	0.50916	96.452	96.171	96.68	0					18	9	2	0	0	0	0.23156	1	35409	35409		46.021	8.047	1	2907000	+		13515	18391	9799	9875	13166	13166					0.015478476484986459
EVGSCTFLLL	10	Unmodified	_EVGSCTFLLL_					0	0	0			REV__ENSG00000126709|ENST00000361157|IFI6	REV__ENSG00000126709|ENST00000361157|IFI6	MULTI-SECPEP	A375_MHC_IP_R2	2	541.6834106445312	2	541.283543	1080.55253	-0.68525	-0.00037091	0.42046	0.00022759	-0.26479	-0.00014333	541.2836922156796	95.504	0.66278	96.254	95.939	96.602	0.75044					19	12	2	0	0	0	0.48072	1	36287	36287		46.021	8.047	1	3109100	+		13516	18391	9799	9875	13167	13167					0.015478476484986459
EVGSGEVL	8	Unmodified	_EVGSGEVL_					0	0	0		ENST00000281038.9_1_11:78285684-78285840:-|nuORF	ENST00000281038.9_1_11:78285684-78285840:-|nuORF	ENST00000281038.9_1_11:78285684-78285840:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	395.60296630859375	2	395.203076	788.391599	0.035685	1.4103E-05	-0.13818	-5.4611E-05	-0.1025	-4.0508E-05	395.20299046790313	37.684	0.51055	37.684	37.402	37.913	0					14	9	2	0	0	0	0.71451	1	12751	12751		30.225	0	1	2313200			13517	10423	9800	9876	13168	13168					-0.011061586732466822
EVGTKKLNPC	10	Unmodified	_EVGTKKLNPC_					0	0	0			REV__CRYBB2|p.E43K|2|0.42|ENSG00000244752|chr22:25224990-25224990|G/A|missense_variant	REV__CRYBB2|p.E43K|2|0.42|ENSG00000244752|chr22:25224990-25224990|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	544.6876831054688	2	544.792066	1087.56958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.341	1	69.076	68.576	69.576	0.73511								0	0	0	0.14983	1	25898	25898		18.146	1.9972	1		+		13518	15919	9801	9877	13169	13169					0.02929768254307419
EVGVTFDVDY	10	Unmodified	_EVGVTFDVDY_					0	0	0			REV__ENSG00000114113|ENST00000232217|RBP2	REV__ENSG00000114113|ENST00000232217|RBP2	MSMS	A375_MHC_IP_R2	2	572.1884155273438	2	572.263862	1142.51317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.48	1	111.22	110.72	111.72	0.73692								0	0	0	0.15308	1	41676	41676		10.824	0.75	1		+		13519	17813	9802	9878	13170	13170					-0.05238581101366435
EVHALLRFF	9	Unmodified	_EVHALLRFF_					0	0	0		DPY19L3|p.S629F|1|0.37|ENSG00000178904|chr19:32480454-32480454|C/T|missense_variant	DPY19L3|p.S629F|1|0.37|ENSG00000178904|chr19:32480454-32480454|C/T|missense_variant	DPY19L3|p.S629F|1|0.37|ENSG00000178904|chr19:32480454-32480454|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	377.6412658691406	3	377.881831	1130.62366	-0.073427	-2.7747E-05	0.33144	0.00012524	0.25801	9.7498E-05	377.88192589437716	37.683	0.5631	38.457	38.124	38.687	0.77451					11	7	2	0	0	0	0.76452	1	13844	13844		4.897	0	1	4822400			13520	794	9803	9879	13171	13171					0.06357728468174173
EVHDLERKY	9	Unmodified	_EVHDLERKY_					0	0	0		ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;nc|ENSG00000205531|Q99733-2|NAP1L4;ENSG00000205531|ENST00000380542|NAP1L4;NAP1L4|p.A97E|1|0.46|ENSG00000205531|chr11:2972127-2972127|G/T|missense_variant	ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000205531|Q99733-2|NAP1L4;NAP1L4|p.A97E|1|0.46|ENSG00000205531|chr11:2972127-2972127|G/T|missense_variant	ENSG00000187109|ENST00000618691|NAP1L1	MSMS	A375_MHC_IP_R1	1	594.651611328125	2	594.80402	1187.59349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.548	1	23.548	23.048	24.048	0								0	0	0	0.15486	1	6486	6486		9.3831	3.1773	1				13521	8806;9516;14444	9804	9880	13172	13172					0.007193250123236794
EVHDLERKY	9	Unmodified	_EVHDLERKY_					0	0	0		ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;nc|ENSG00000205531|Q99733-2|NAP1L4;ENSG00000205531|ENST00000380542|NAP1L4;NAP1L4|p.A97E|1|0.46|ENSG00000205531|chr11:2972127-2972127|G/T|missense_variant	ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000205531|Q99733-2|NAP1L4;NAP1L4|p.A97E|1|0.46|ENSG00000205531|chr11:2972127-2972127|G/T|missense_variant	ENSG00000187109|ENST00000618691|NAP1L1	MSMS	A375_MHC_IP_R1	1	594.9232177734375	2	594.80402	1187.59349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.34	1	106.34	105.84	106.84	0								0	0	0	0.15486	1	39035	39035		10.074	0.6908	1				13522	8806;9516;14444	9804	9880	13173	13173					0.007193250123236794
EVHDSDDW	8	Unmodified	_EVHDSDDW_					0	0	0		ENSG00000139330|ENST00000266719|KERA	ENSG00000139330|ENST00000266719|KERA	ENSG00000139330|ENST00000266719|KERA	MULTI-SECPEP	A375_MHC_IP_R1	1	502.20233154296875	2	501.693603	1001.37265	-0.61081	-0.00030644	-0.51405	-0.00025789	-1.1249	-0.00056433	501.6933172120693	90.987	0.55715	90.987	90.742	91.299	0					12	10	2	0	0	0	0.972	1	33540	33540		2.5775	1.8871	1	817780			13523	5071	9805	9881	13174	13174					-0.1279774003495504
EVHFLEQI	8	Unmodified	_EVHFLEQI_					0	0	0			REV__ENSG00000276043|ENST00000650932|UHRF1	REV__ENSG00000276043|ENST00000650932|UHRF1	MULTI-MSMS	A375_MHC_IP_R2	2	508.21826171875	2	507.766374	1013.5182	-1.1367	-0.00057719	0.19159	9.7284E-05	-0.94512	-0.0004799	507.7665456671663	57.158	0.71229	57.909	57.612	58.324	0.75014					29	13	3	0	0	0	0.7338	1	21752	21752		24.674	0	1	7333000	+		13524	22965	9806	9882	13175	13175					0.01197767551900597
EVHFVEHY	8	Unmodified	_EVHFVEHY_					0	0	0		ENST00000590558.5_1_19:5692045-5712033:-|nuORF;nc|ENSG00000196365|P36776-3|LONP1;nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5692045-5696439:-|nuORF	ENST00000590558.5_1_19:5692045-5712033:-|nuORF	ENST00000590558.5_1_19:5692045-5712033:-|nuORF	MSMS	A375_MHC_IP_R1	1	530.160888671875	2	530.248349	1058.48214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.987	1	72.987	72.487	73.487	0								0	0	0	0.16876	1	26565	26565		20.871	6.2895	1				13525	9030	9807	9883	13176	13176					-0.04475689624950974
EVHGKRMELV	10	Unmodified	_EVHGKRMELV_					0	0	0			REV__nc|ENSG00000165533|Q8TAM2-3|TTC8	REV__nc|ENSG00000165533|Q8TAM2-3|TTC8	MSMS	A375_MHC_IP_R1	1	399.9402160644531	3	399.885135	1196.63358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.863	1	19.863	19.363	20.363	0								0	0	0	0.15207	1	5015	5015		8.4443	0.49891	1		+		13526	20594	9808	9884	13177	13177					0.04312548411235184
EVHLWIGY	8	Unmodified	_EVHLWIGY_					0	0	0			REV__PDXDC1|p.Y281Cfs*12|1|0.22|ENSG00000179889|chr16:15017148-15017149|TA/-|frameshift_variant	REV__PDXDC1|p.Y281Cfs*12|1|0.22|ENSG00000179889|chr16:15017148-15017149|TA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	507.98016357421875	2	508.763635	1015.51272	-0.34596	-0.00017601	2.7303	0.0013891	2.3844	0.0012131	509.2663069179357	55.837	0.25256	55.837	55.738	55.991	0					6	4	2	0	0	0	0.92215	1	19956	19956		5.7604	5.7604	1	2404800	+		13527	21585	9809	9885	13178	13178					0.005580887600899587
EVHTLNFALSS	11	Unmodified	_EVHTLNFALSS_					0	0	0		tr|U7T3T1|U7T3T1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00248PE=4SV=1	tr|U7T3T1|U7T3T1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00248PE=4SV=1	tr|U7T3T1|U7T3T1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00248PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	406.9432678222656	3	406.543544	1216.6088	-0.23692	-9.6316E-05	-0.12352	-5.0217E-05	-0.36044	-0.00014653	406.5435148275902	23.933	0.61163	24.563	24.384	24.996	0.63014					16	11	2	0	0	0	0.72713	1	7787	7787		11.631	1.8671	1	17627000			13528	29985	9810	9886	13179	13179					0.009161918095287547
EVHTMEGDPD	10	Unmodified	_EVHTMEGDPD_					0	0	0		nc|ENSG00000170074|Q9UHL3|FAM153A;ENSG00000170074|ENST00000614127|FAM153A	nc|ENSG00000170074|Q9UHL3|FAM153A	nc|ENSG00000170074|Q9UHL3|FAM153A	MULTI-MSMS	A375_MHC_IP_R1	1	565.169677734375	2	565.226953	1128.43935	-0.40969	-0.00023157	-0.053399	-3.0182E-05	-0.46309	-0.00026175	565.2268702256497	34.068	1.6697	34.068	33.09	34.759	0					53	32	2	0	0	0	0.69306	2	11084	11084;11121		13.906	3.0821	1	2927800			13529	7468	9811	9887	13180;13181	13180					-0.11972872535352508
EVIFKRAADL	10	Unmodified	_EVIFKRAADL_					0	0	0		EBF1|p.L379F|1|0.38|ENSG00000164330|chr5:158714173-158714173|G/A|missense_variant	EBF1|p.L379F|1|0.38|ENSG00000164330|chr5:158714173-158714173|G/A|missense_variant	EBF1|p.L379F|1|0.38|ENSG00000164330|chr5:158714173-158714173|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	388.29254150390625	3	387.892396	1160.65536	0.58612	0.00022735	-0.30896	-0.00011984	0.27716	0.00010751	387.89223486411333	48.333	0.40557	48.333	48.223	48.629	0					10	7	2	0	0	0	0.88038	1	17102	17102		12.856	0	1	3259200			13530	814	9812	9888	13182	13182					0.08145676431468019
EVIIIEPFF	9	Unmodified	_EVIIIEPFF_					0	0	0		nc|ENSG00000286112|Q16773-3|KYAT1;ENST00000462722.5_1_9:131598322-131644289:-|nuORF;ENSG00000171097|ENST00000302586|KYAT1	nc|ENSG00000286112|Q16773-3|KYAT1	nc|ENSG00000286112|Q16773-3|KYAT1	MSMS	A375_MHC_IP_R1	1	369.5960998535156	3	369.542593	1105.60595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.916	1	27.916	27.416	28.416	0								0	0	0	0.15486	1	8533	8533		2.7352	0	1				13531	7572	9813	9889	13183	13183					0.05736968422661448
EVIKEKKKQK	10	Unmodified	_EVIKEKKKQK_					0	0	0			REV__ENSG00000198740|ENST00000430262|ZNF652	REV__ENSG00000198740|ENST00000430262|ZNF652	MSMS	A375_MHC_IP_R2	2	629.5823974609375	2	629.398087	1256.78162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.471	1	94.216	93.716	94.716	0.74474								0	0	0	0.15465	1	35534	35534		5.7319	0.83484	1		+		13532	22408	9814	9890	13184	13184					0.16350182936730562
EVILLTEGEVE	11	Unmodified	_EVILLTEGEVE_					0	0	0			REV__ENST00000432901.3_1_20:18123253-18123604:+|nuORF	REV__ENST00000432901.3_1_20:18123253-18123604:+|nuORF	MSMS	A375_MHC_IP_R1	1	615.72509765625	2	615.826826	1229.6391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.288	1	84.288	83.788	84.788	0								0	0	0	0.16108	1	30868	30868		13.042	2.2185	1		+		13533	19681	9815	9891	13185	13185					0.033465056840668694
EVINGGHIV	9	Unmodified	_EVINGGHIV_					0	0	0			REV__tr|U7ST90|U7ST90_FUSNUYkuDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01333PE=4SV=1	REV__tr|U7ST90|U7ST90_FUSNUYkuDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01333PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	469.65740966796875	2	469.258717	936.50288	-0.03253	-1.5265E-05	-1.4499	-0.00068036	-1.4824	-0.00069563	469.2577667784205	44.445	0.61521	44.445	44.061	44.676	0					19	11	2	0	0	0	0.35581	1	15501	15501		26.884	0	1	3875900	+		13534	28464	9816	9892	13186	13186					0.032089007547028814
EVINGGHIV	9	Unmodified	_EVINGGHIV_					0	0	0			REV__tr|U7ST90|U7ST90_FUSNUYkuDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01333PE=4SV=1	REV__tr|U7ST90|U7ST90_FUSNUYkuDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01333PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	469.258717	936.50288	-0.43253	-0.00020297	-1.4542	-0.00068238	-1.8867	-0.00088535	469.2579808898506	43.635	0.80927	44.404	43.923	44.732	0.7691	-0.020289	-1.3366E-06	NaN	26.884	18	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3798200	+		13535	28464	9816	9892							0.032089007547028814
EVIRALKSL	9	Unmodified	_EVIRALKSL_					0	0	0			REV__nc|ENSG00000131979|P30793-3|GCH1	REV__nc|ENSG00000131979|P30793-3|GCH1	MULTI-MSMS	A375_MHC_IP_R1	1	514.9252319335938	2	514.826766	1027.63898	-0.3916	-0.0002016	-0.37552	-0.00019333	-0.76712	-0.00039493	514.826553110715	56.292	0.30428	56.292	56.143	56.447	0					9	5	2	0	0	0	0.64136	1	20120	20120		12.241	2.1667	1	886630	+		13536	18632	9817	9893	13187	13187					0.12626595265373908
EVIRSLRLK	9	Unmodified	_EVIRSLRLK_					0	0	0			REV__ENSG00000250565|ENST00000522587|ATP6V1E2	REV__ENSG00000250565|ENST00000522587|ATP6V1E2	MULTI-SECPEP	A375_MHC_IP_R1	1	557.7581176757812	2	557.358765	1112.70298	-0.56379	-0.00031423	-0.56304	-0.00031381	-1.1268	-0.00062804	557.3583747777607	40.888	0.3527	40.888	40.66	41.013	0					9	6	2	0	0	0	0.79535	1	14100	14100		1.3295	0	1	2707000	+		13537	22844	9818	9894	13188	13188					0.151133754222883
EVIRSLRLK	9	Unmodified	_EVIRSLRLK_					0	0	0			REV__ENSG00000250565|ENST00000522587|ATP6V1E2	REV__ENSG00000250565|ENST00000522587|ATP6V1E2	MULTI-MATCH	A375_MHC_IP_R2	2		2	557.358765	1112.70298	-0.8006	-0.00044622	0.10576	5.8947E-05	-0.69483	-0.00038727	557.3587959186073	39.765	0.25415	40.54	40.422	40.676	0.77451	-0.17381	0.00058765	NaN	1.3295	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1745900	+		13538	22844	9818	9894							0.151133754222883
EVISIKNKFP	10	Unmodified	_EVISIKNKFP_					0	0	0		tr|U7SUS8|U7SUS8_FUSNUGH3auxin-responsivepromoterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00992PE=4SV=1	tr|U7SUS8|U7SUS8_FUSNUGH3auxin-responsivepromoterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00992PE=4SV=1	tr|U7SUS8|U7SUS8_FUSNUGH3auxin-responsivepromoterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00992PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	392.6326904296875	3	392.23253	1173.67576	0.34521	0.0001354	0.053978	2.1172E-05	0.39919	0.00015657	392.2324963558361	44.308	0.51311	44.308	44.113	44.626	0					29	9	5	0	0	0	0.67901	1	15450	15450		14.957	0	1	8403700			13539	29774	9819	9895	13189	13189					0.09586847091281925
EVISKLYAV	9	Unmodified	_EVISKLYAV_					0	0	0		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-SECPEP	A375_MHC_IP_R1	1	511.6995849609375	2	511.30005	1020.58555	-0.79326	-0.0004056	0.32316	0.00016523	-0.47011	-0.00024037	511.30023962792075	67.421	0.66349	67.421	67.091	67.754	0					25	12	3	0	0	0	0.070665	1	24475	24475		69.105	32.978	1	3714200			13540	6184	9820	9896	13190	13190					0.07607797762841528
EVISKLYAV	9	Unmodified	_EVISKLYAV_					0	0	0		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-SECPEP	A375_MHC_IP_R2	2	511.69952392578125	2	511.30005	1020.58555	-0.86224	-0.00044086	0.16097	8.2302E-05	-0.70127	-0.00035856	511.30009996633873	66.568	0.86511	67.304	67.035	67.9	0.73631					33	16	3	0	0	0	0.24324	1	25228	25228		53.833	21.527	1	4699900			13541	6184	9820	9896	13191	13191					0.07607797762841528
EVISYKIRFRE	11	Unmodified	_EVISYKIRFRE_					0	0	0		ENST00000555311.1_1_14:31578566-31578662:-|nuORF	ENST00000555311.1_1_14:31578566-31578662:-|nuORF	ENST00000555311.1_1_14:31578566-31578662:-|nuORF	MSMS	A375_MHC_IP_R2	2	720.80322265625	2	720.403901	1438.79325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.515	1	78.258	77.758	78.758	0.74293								0	0	0	0.15183	1	29434	29434		19.362	5.4559	1				13542	13430	9821	9897	13192	13192					0.09140379960058453
EVIWYKGDEEI	11	Unmodified	_EVIWYKGDEEI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;TTN|p.L14011*|1|0.26|ENSG00000155657|chr2:178618595-178618595|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	A375_MHC_IP_R1	1	690.8267822265625	2	690.837725	1379.6609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128	1	128	127.5	128.5	0								0	0	0	0.16191	1	49123	49123		8.7454	0	1				13543	6151;14694	9822	9898	13193	13193					-0.01374689567387577
EVIYGRKRWF	10	Unmodified	_EVIYGRKRWF_					0	0	0		nc|ENSG00000161999|Q96S16-2|JMJD8;ENSG00000161999|ENST00000609261|JMJD8;ENST00000569441.5_1_16:732796-733478:-|nuORF;ENST00000568689.5_1_16:732830-733478:-|nuORF;ENST00000565302.5_1_16:732919-733769:-|nuORF	nc|ENSG00000161999|Q96S16-2|JMJD8	nc|ENSG00000161999|Q96S16-2|JMJD8	MULTI-SECPEP	A375_MHC_IP_R1	1	451.1788330078125	3	451.919056	1352.73534	0.024263	1.0965E-05	-0.55858	-0.00025243	-0.53431	-0.00024147	451.9188340165138	49.835	0.45847	49.835	49.591	50.049	0					14	8	2	0	0	0	0.94587	1	17697	17697		1.9064	0	1	2233500			13544	6501	9823	9899	13194	13194					0.07308162825324871
EVIYTDWK	8	Unmodified	_EVIYTDWK_					0	0	0		nc|ENSG00000162643|Q8IWG1-2|DNAI3;ENSG00000162643|ENST00000294664|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	MULTI-SECPEP	A375_MHC_IP_R2	2	527.1983642578125	2	527.266207	1052.51786	-0.8579	-0.00045234	0.11712	6.1753E-05	-0.74078	-0.00039059	527.7684495958949	38.485	0.3037	39.26	39.149	39.453	0.77451					8	5	2	0	0	0	0.8957	1	14228	14228		21.747	0	1	2203400			13545	6572	9824	9900	13195	13195					-0.006296521679814759
EVKAWLWAE	9	Unmodified	_EVKAWLWAE_					0	0	0		ENST00000574957.1_1_16:3075999-3076221:+|nuORF;ENST00000571046.1_1_16:3074279-3076290:+|nuORF;ENST00000574498.5_1_16:3074279-3076221:+|nuORF;nc|ENSG00000131652|Q86W42-3|THOC6;nc|ENSG00000131652|Q86W42-2|THOC6;ENSG00000131652|ENST00000326266|THOC6	ENST00000574957.1_1_16:3075999-3076221:+|nuORF	ENST00000574957.1_1_16:3075999-3076221:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	378.26458740234375	3	377.865958	1130.57605	-0.17067	-6.4491E-05	1.6104	0.00060852	1.4397	0.00054403	377.8646018165045	51.883	0.6117	52.635	52.321	52.932	0.75225					38	11	5	0	0	0	0.58271	1	19567	19567		14.405	2.774	1	6351700			13546	4340	9825	9901	13196	13196					0.01598029477304408
EVKEEDTEQKR	11	Unmodified	_EVKEEDTEQKR_					0	0	0		nc|ENSG00000106823|O94769-2|ECM2;ENSG00000106823|ENST00000344604|ECM2	nc|ENSG00000106823|O94769-2|ECM2	nc|ENSG00000106823|O94769-2|ECM2	MULTI-SECPEP	A375_MHC_IP_R1	1	464.9967346191406	3	464.231805	1389.67359	-0.29394	-0.00013645	0.31269	0.00014516	0.018755	8.7069E-06	464.23198432613356	34.496	0.35449	34.496	34.303	34.657	0					13	6	3	0	0	0	0.99711	1	11383	11383		7.4291	1.6456	1	1809500			13547	2716	9826	9902	13197	13197					-0.005662781751652801
EVKFEYTY	8	Unmodified	_EVKFEYTY_					0	0	0			REV__ENSG00000160218|ENST00000291574|TRAPPC10	REV__ENSG00000160218|ENST00000291574|TRAPPC10	MULTI-MSMS	A375_MHC_IP_R1	1	540.1578979492188	2	539.758215	1077.50188	-0.94238	-0.00050866	-0.61832	-0.00033374	-1.5607	-0.0008424	540.2588498862444	136.18	0.56418	136.18	135.79	136.36	0					13	10	2	0	0	0	0.77717	1	52481	52481		5.2307	0.47466	1	1401400	+		13548	20154	9827	9903	13198	13198					-0.033773584048503835
EVKGGSCG	8	Unmodified	_EVKGGSCG_					0	0	0		ENSG00000104866|ENST00000221462|PPP1R37;nc|ENSG00000104866|O75864-2|PPP1R37;ENST00000540059.1_1_19:45648535-45649727:+|nuORF;ENST00000422370.2_1_19:45648535-45649504:+|nuORF	ENSG00000104866|ENST00000221462|PPP1R37	ENSG00000104866|ENST00000221462|PPP1R37	MULTI-SECPEP	A375_MHC_IP_R1	1	369.06854248046875	2	368.668346	735.322139	0.54208	0.00019985	-0.36131	-0.0001332	0.18077	6.6646E-05	368.6681937208164	108.58	0.55702	108.58	108.41	108.97	0					15	10	2	0	0	0	0.972	1	39836	39836		0	0	1	2144600			13549	2545	9828	9904	13199	13199					-0.056109408936322325
EVKHARKTL	9	Unmodified	_EVKHARKTL_					0	0	0		ENSG00000099821|ENST00000588649|POLRMT	ENSG00000099821|ENST00000588649|POLRMT	ENSG00000099821|ENST00000588649|POLRMT	MULTI-SECPEP	A375_MHC_IP_R1	1	361.62042236328125	3	361.220735	1080.64038	-0.12855	-4.6435E-05	-0.42801	-0.00015461	-0.55656	-0.00020104	361.2205816736638	25.991	0.40527	25.991	25.866	26.271	0					13	7	3	0	0	0	0.60917	1	7719	7719		6.1918	1.663	1	5444900			13550	2087	9829	9905	13200	13200					0.10328229354149698
EVKHFASILP	10	Unmodified	_EVKHFASILP_					0	0	0			REV__ENSG00000198932|ENST00000537097|GPRASP1	REV__ENSG00000198932|ENST00000537097|GPRASP1	MULTI-SECPEP	A375_MHC_IP_R1	1	381.5966491699219	3	380.885241	1139.63389	0.48601	0.00018512	-0.12855	-4.8964E-05	0.35746	0.00013615	380.8849599469384	37.334	0.55988	37.334	36.945	37.505	0					21	10	3	0	0	0	0.6774	1	12618	12618		14.218	2.7003	1	3040400	+		13551	22451	9830	9906	13201	13201					0.06966291402773095
EVKIKKYKKYW	11	Unmodified	_EVKIKKYKKYW_					0	0	0			REV__ENST00000483346.2_1_2:200213306-200233427:-|nuORF	REV__ENST00000483346.2_1_2:200213306-200233427:-|nuORF	MSMS	A375_MHC_IP_R1	1	756.947265625	2	756.950487	1511.88642	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.474	1	97.474	96.974	97.974	0								0	0	0	0.16302	1	35811	35811		2.9952	1.6657	1		+		13552	18061	9831	9907	13202	13202					0.15095304413284794
EVKIKKYKKYW	11	Unmodified	_EVKIKKYKKYW_					0	0	0			REV__ENST00000483346.2_1_2:200213306-200233427:-|nuORF	REV__ENST00000483346.2_1_2:200213306-200233427:-|nuORF	MSMS	A375_MHC_IP_R2	2	756.6459350585938	2	756.950487	1511.88642	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.617	1	81.361	80.861	81.861	0.74474								0	0	0	0.16354	1	30608	30608		0.30703	0	1		+		13553	18061	9831	9907	13203	13203					0.15095304413284794
EVKKKLVTEIL	11	Unmodified	_EVKKKLVTEIL_					0	0	0		ABCG4|p.E179K|1|0.7|ENSG00000172350|chr11:119154570-119154570|G/A|missense_variant	ABCG4|p.E179K|1|0.7|ENSG00000172350|chr11:119154570-119154570|G/A|missense_variant	ABCG4|p.E179K|1|0.7|ENSG00000172350|chr11:119154570-119154570|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	649.7929077148438	2	650.415946	1298.81734	-0.71085	-0.00046235	0.31173	0.00020275	-0.39912	-0.0002596	650.4164295205136	146.8	0.16177	146.8	146.66	146.83	0					14	13	2	0	0	0	1.0015	1	56126	56126		0	0	1	71508			13554	18	9832	9908	13204	13204					0.17988220393795018
EVKKKRGMH	9	Unmodified	_EVKKKRGMH_					0	0	0		ENST00000462156.1_1_2:231253312-231253381:+|nuORF	ENST00000462156.1_1_2:231253312-231253381:+|nuORF	ENST00000462156.1_1_2:231253312-231253381:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	371.9499816894531	3	371.550087	1111.62843	0.23457	8.7155E-05	-0.57216	-0.00021259	-0.33759	-0.00012543	371.54986569402485	52.617	1.8788	52.617	51.982	53.861	0					89	36	4	0	0	0	0.75032	1	18923	18923		2.4985	0.21571	1	46479000			13555	12198	9833	9909	13205	13205					0.07708289339325347
EVKKLMRKYT	10	Unmodified	_EVKKLMRKYT_					0	0	0		ENSG00000101265|ENST00000379400|RASSF2	ENSG00000101265|ENST00000379400|RASSF2	ENSG00000101265|ENST00000379400|RASSF2	MSMS	A375_MHC_IP_R1	1	648.2100830078125	2	648.37884	1294.74313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.48	1	106.48	105.98	106.98	0								0	0	0	0.15451	1	39083	39083		6.2058	0.97511	1				13556	2275	9834	9910	13206	13206					0.10754554030563668
EVKKVEKVI	9	Unmodified	_EVKKVEKVI_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MULTI-MSMS	A375_MHC_IP_R1	1	358.29718017578125	3	357.897258	1070.66995	0.078064	2.7939E-05	-0.51972	-0.00018601	-0.44166	-0.00015807	357.897128785938	20.054	1.7803	20.054	19.571	21.352	0					128	34	7	0	0	0	0.37338	1	5218	5218		26.021	1.0636	1	1118900000	+		13557	20801	9835	9911	13207	13207					0.1374374857962266
EVKKVEKVI	9	Unmodified	_EVKKVEKVI_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MULTI-MSMS	A375_MHC_IP_R2	2	358.2972106933594	3	357.897258	1070.66995	-0.54657	-0.00019562	0.060806	2.1762E-05	-0.48577	-0.00017385	357.8972451800094	21.741	2.6457	22.361	20.66	23.306	0.61932					121	51	5	0	0	0	0.58268	1	6465	6465		15.739	0.20017	1	65488000	+		13558	20801	9835	9911	13208	13208					0.1374374857962266
EVKKVERKV	9	Unmodified	_EVKKVERKV_					0	0	0			REV__tr|U7SGG0|U7SGG0_FUSNUGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmSPE=3SV=1	REV__tr|U7SGG0|U7SGG0_FUSNUGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmSPE=3SV=1	MSMS	A375_MHC_IP_R2	2	372.2782897949219	3	372.236274	1113.68699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.578	1	66.316	65.816	66.816	0.73811								0	0	0	0.15119	1	24862	24862		19.626	6.7534	1		+		13559	28184	9836	9912	13209	13209					0.13469669185428756
EVKKVRKRTH	10	Unmodified	_EVKKVRKRTH_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MSMS	A375_MHC_IP_R2	2	640.9896850585938	2	640.89912	1279.78369	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.144	1	79.888	79.388	80.388	0.74474								0	0	0	0.15541	1	30034	30034		3.2813	0.78282	1				13560	6823	9837	9913	13210	13210					0.15498656465206295
EVKLKGADHK	10	Unmodified	_EVKLKGADHK_					0	0	0		chr17:42833673-42834358|145|10.77|0.45|4.59|+|0|PSME3,None|1	chr17:42833673-42834358|145|10.77|0.45|4.59|+|0|PSME3,None|1	chr17:42833673-42834358|145|10.77|0.45|4.59|+|0|PSME3,None|1	MULTI-MSMS	A375_MHC_IP_R1	1	375.60540771484375	3	375.552262	1123.63496	-0.11908	-4.4721E-05	0.10391	3.9023E-05	-0.015172	-5.6979E-06	375.55233630135876	29.227	1.1541	29.227	28.694	29.848	0					67	22	7	0	0	0	0.70012	1	9025	9025		14.957	6.5129	1	296140000			13561	444	9838	9914	13211	13211					0.07808505771640739
EVKLRQFQQ	9	Unmodified	_EVKLRQFQQ_					0	0	0			REV__ENSG00000169375|ENST00000394947|SIN3A	REV__ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	A375_MHC_IP_R1	1	392.6277160644531	3	392.555895	1174.64586	-0.016409	-6.4413E-06	2.7315	0.0010722	2.715	0.0010658	392.5571261535332	52.767	0.71177	52.767	52.387	53.099	0					24	13	2	0	0	0	0.60101	1	18810	18810		10.151	2.2052	1	1796500	+		13562	20928	9839	9915	13212	13212					0.06551908145934249
EVKNAVIRV	9	Unmodified	_EVKNAVIRV_					0	0	0		ENSG00000181767|ENST00000313503|OR8H2	ENSG00000181767|ENST00000313503|OR8H2	ENSG00000181767|ENST00000313503|OR8H2	MULTI-SECPEP	A375_MHC_IP_R2	2	514.5462036132812	2	514.316566	1026.61858	-0.69879	-0.0003594	1.4252	0.00073301	0.72643	0.00037361	514.3168172754473	98.648	0.35532	99.407	99.15	99.505	0.75977					9	6	2	0	0	0	0.74169	1	37341	37341		11.495	4.2055	1	818860			13563	8360	9840	9916	13213	13213					0.10633424605566688
EVKPLHRKL	9	Unmodified	_EVKPLHRKL_					0	0	0			REV__AHNAK2|p.G4544R|1|0.19|ENSG00000185567|chr14:104941821-104941821|C/T|missense_variant	REV__AHNAK2|p.G4544R|1|0.19|ENSG00000185567|chr14:104941821-104941821|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	561.1456298828125	2	560.353483	1118.69241	-0.49849	-0.00027933	-2.4117	-0.0013514	-2.9101	-0.0016307	560.8531973957826	93.966	0.15134	93.966	93.84	93.991	0					4	2	2	0	0	0	0.77396	1	34509	34509		6.2058	1.4498	1	882910	+		13564	15346	9841	9917	13214	13214					0.1378139276789625
EVKQLSATI	9	Unmodified	_EVKQLSATI_					0	0	0			REV__nc|ENSG00000197646|Q9BQ51-3|PDCD1LG2	REV__nc|ENSG00000197646|Q9BQ51-3|PDCD1LG2	MSMS	A375_MHC_IP_R1	1	494.9027404785156	2	494.787307	987.560061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.85	1	56.85	56.35	57.35	0								0	0	0	0.15468	1	20375	20375		13.906	1.3745	1		+		13565	27443	9842	9918	13215	13215					0.06578323240444206
EVKQMRARRKT	11	Unmodified	_EVKQMRARRKT_					0	0	0		ENSG00000121764|ENST00000403528|HCRTR1	ENSG00000121764|ENST00000403528|HCRTR1	ENSG00000121764|ENST00000403528|HCRTR1	MSMS	A375_MHC_IP_R2	2	701.8609008789062	2	701.906619	1401.79869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.488	1	92.223	91.723	92.723	0.7345								0	0	0	0.16258	1	34800	34800		5.2969	0	1				13566	3736	9843	9919	13216	13216					0.1138578027089352
EVKREVKKV	9	Unmodified	_EVKREVKKV_					0	0	0		tr|U7SGG0|U7SGG0_FUSNUGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmSPE=3SV=1	tr|U7SGG0|U7SGG0_FUSNUGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmSPE=3SV=1	tr|U7SGG0|U7SGG0_FUSNUGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmSPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	372.3020935058594	3	372.236274	1113.68699	0.10902	4.058E-05	0.28298	0.00010534	0.392	0.00014591	372.2364186281326	24.409	1.0164	25.053	24.857	25.873	0.64368					26	19	2	0	0	0	0.78798	1	8165	8165		0.86438	0	1	5508300			13567	29403	9844	9920	13217	13217					0.13469669185428756
EVKRFSLGSP	10	Unmodified	_EVKRFSLGSP_					0	0	0			REV__ITGAL|p.P825S|1|0.26|ENSG00000005844|chr16:30506821-30506821|C/T|missense_variant	REV__ITGAL|p.P825S|1|0.26|ENSG00000005844|chr16:30506821-30506821|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	560.1895751953125	2	560.31148	1118.60841	-0.58511	-0.00032785	0.31725	0.00017776	-0.26786	-0.00015008	560.31157558737	46.025	0.35386	46.79	46.704	47.058	0.76519					8	6	2	0	0	0	0.91556	1	17293	17293		6.2058	0	1	2664300	+		13568	26804	9845	9921	13218	13218					0.05384816880359722
EVKRLIFPRFY	11	Unmodified	_EVKRLIFPRFY_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MSMS	A375_MHC_IP_R1	1	489.6685791015625	3	489.953878	1466.8398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.65	1	71.65	71.15	72.15	0								0	0	0	0.1628	1	26043	26043		4.1166	2.0327	1				13569	8698	9846	9922	13219	13219					0.12505864582021786
EVKRSKSLI	9	Unmodified	_EVKRSKSLI_					0	0	0			REV__ENST00000446710.5_2_20:34046171-34047829:+|nuORF	REV__ENST00000446710.5_2_20:34046171-34047829:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	354.288818359375	3	353.888874	1058.64479	-0.27634	-9.7792E-05	-0.00087447	-3.0946E-07	-0.27721	-9.8102E-05	353.88883104082237	32.637	0.50821	33.374	33.112	33.62	0.73691					20	9	3	0	0	0	0.69884	1	11653	11653		7.1017	7.1017	1	3703200	+		13570	24858	9847	9923	13220	13220					0.11781693777061264
EVKRTFRHKFR	11	Unmodified	_EVKRTFRHKFR_					0	0	0		tr|U7T5T2|U7T5T2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00074PE=4SV=1	tr|U7T5T2|U7T5T2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00074PE=4SV=1	tr|U7T5T2|U7T5T2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00074PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	752.8355712890625	2	752.436401	1502.85825	-0.41654	-0.00031342	-0.65399	-0.00049209	-1.0705	-0.00080551	752.4359262314534	56.738	0.50962	56.738	56.498	57.007	0					27	9	4	0	0	0	0.72494	1	20312	20312		13.615	4.8695	1	23939000			13571	30029	9848	9924	13221	13221					0.1269341927657024
EVKRTFRHKFR	11	Unmodified	_EVKRTFRHKFR_					0	0	0		tr|U7T5T2|U7T5T2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00074PE=4SV=1	tr|U7T5T2|U7T5T2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00074PE=4SV=1	tr|U7T5T2|U7T5T2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00074PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	752.8353271484375	2	752.436401	1502.85825	-1.0704	-0.0008054	-0.74004	-0.00055683	-1.8104	-0.0013622	752.4358321864975	56.015	0.51115	56.766	56.489	57	0.75015					29	9	4	0	0	0	0.7039	1	21130	21130		15.248	3.0078	1	21399000			13572	30029	9848	9924	13222	13222					0.1269341927657024
EVKSNEEES	9	Unmodified	_EVKSNEEES_					0	0	0			REV__ENST00000581849.1_1_17:38296801-38318191:+|nuORF	REV__ENST00000581849.1_1_17:38296801-38318191:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	526.7220458984375	2	525.732926	1049.4513	-0.52218	-0.00027453	-0.47919	-0.00025193	-1.0014	-0.00052645	525.7329588640027	39.984	0.45573	40.759	40.524	40.98	0.77451					29	8	4	0	0	0	0.6324	1	14740	14740		13.042	2.2185	1	15834000	+		13573	15577	9849	9925	13223	13223					-0.07144932520509428
EVKSYKNIDPT	11	Unmodified	_EVKSYKNIDPT_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	A375_MHC_IP_R2	2	431.988037109375	3	431.894354	1292.66123	-0.094768	-4.093E-05	-1.7872	-0.00077187	-1.8819	-0.0008128	432.22846792805245	135.71	0.40971	135.82	135.58	135.99	0.11134					13	7	2	0	0	0	1.0012	1	53306	53306		0.073264	0	1	1371500	+		13574	21369	9850	9926	13224	13224					0.02660730152456381
EVKVETVTLL	10	Unmodified	_EVKVETVTLL_					0	0	0			REV__JAG2|p.A1064T|1|0.31|ENSG00000184916|chr14:105143533-105143533|C/T|missense_variant	REV__JAG2|p.A1064T|1|0.31|ENSG00000184916|chr14:105143533-105143533|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	566.2371826171875	2	565.836997	1129.65944	-0.22211	-0.00012568	0.78443	0.00044386	0.56232	0.00031818	566.3387674284548	78.53	0.45533	78.53	78.251	78.707	0					14	8	2	0	0	0	0.92227	1	28672	28672		13.042	2.2185	1	2527000	+		13575	26812	9851	9927	13225	13225					0.09979721134527608
EVKVKLIVLVP	11	Unmodified	_EVKVKLIVLVP_					0	0	0		ENSG00000158769|ENST00000368026|F11R	ENSG00000158769|ENST00000368026|F11R	ENSG00000158769|ENST00000368026|F11R	MSMS	A375_MHC_IP_R1	1	619.0386352539062	2	618.918124	1235.8217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.894	1	86.894	86.394	87.394	0								0	0	0	0.16331	1	31873	31873		1.4819	1.0236	1				13576	6327	9852	9928	13226	13226					0.21321729607325324
EVKVYSCMR	9	Unmodified	_EVKVYSCMR_					0	0	0		ENST00000561210.1_1_15:54556427-54709226:+|nuORF	ENST00000561210.1_1_15:54556427-54709226:+|nuORF	ENST00000561210.1_1_15:54556427-54709226:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	557.7183837890625	2	557.772819	1113.53109	-0.87969	-0.00049067	-2.105	-0.0011741	-2.9847	-0.0016648	557.7721138721859	51.206	0.75829	51.958	51.562	52.321	0.75225					21	14	2	0	0	0	0.4867	1	19336	19336		20.454	0.039092	1	1808500			13577	13506	9853	9929	13227	13227					-0.021138606518661618
EVKWRWMSLS	10	Unmodified	_EVKWRWMSLS_					0	0	0			REV__ENST00000169298.7_1_3:186794199-186794490:+|nuORF	REV__ENST00000169298.7_1_3:186794199-186794490:+|nuORF	MSMS	A375_MHC_IP_R1	1	661.0234985351562	2	661.339715	1320.66488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.437	1	89.437	88.937	89.937	0								0	0	0	0.15372	1	32854	32854		8.7454	1.1365	1		+		13578	23013	9854	9930	13228	13228					0.017371214453532957
EVLAEEKEVPM	11	Unmodified	_EVLAEEKEVPM_					0	0	0		ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	MULTI-SECPEP	A375_MHC_IP_R1	1	425.6164855957031	3	425.216328	1272.62715	0.19273	8.1951E-05	0.12273	5.2188E-05	0.31546	0.00013414	425.2163776667636	22.798	0.45096	22.798	22.623	23.074	0					17	8	3	0	0	0	0.9836	1	6163	6163		6.2344	0	1	5738000			13579	7401	9855	9931	13229	13229					0.0017456566920373007
EVLALDPAS	9	Unmodified	_EVLALDPAS_					0	0	0			REV__ENSG00000174945|ENST00000683327|AMZ1	REV__ENSG00000174945|ENST00000683327|AMZ1	MULTI-MSMS	A375_MHC_IP_R2	2	458.1449279785156	2	457.745108	913.475663	-0.19521	-8.9357E-05	0.3014	0.00013796	0.10619	4.8607E-05	457.7451119214171	98.837	0.50603	99.597	99.403	99.909	0.75977					15	9	2	0	0	0	0.077132	1	37535	37535		54.774	2.5052	1	2091200	+		13580	21315	9856	9932	13230	13230					0.015463724236724374
EVLCEENYF	9	Unmodified	_EVLCEENYF_					0	0	0		nc|ENSG00000138658|Q86YA3-6|ZGRF1;ENST00000514770.5_1_4:113532004-113549797:-|nuORF;nc|ENSG00000138658|Q86YA3-5|ZGRF1;ENST00000264370.9_1_4:113529030-113554332:-|nuORF;nc|ENSG00000138658|Q86YA3-4|ZGRF1;ENSG00000138658|ENST00000505019|ZGRF1;nc|ENSG00000138658|Q86YA3-3|ZGRF1	nc|ENSG00000138658|Q86YA3-6|ZGRF1	nc|ENSG00000138658|Q86YA3-6|ZGRF1	MSMS	A375_MHC_IP_R2	2	573.2811889648438	2	573.244615	1144.47468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.365	1	72.099	71.599	72.599	0.73421								0	0	0	0.15486	1	27072	27072		8.5933	0	1				13581	5018	9857	9933	13231	13231					-0.09178210007553389
EVLDCCCC	8	Unmodified	_EVLDCCCC_					0	0	0		ENSG00000253457|ENST00000517349|SMIM18	ENSG00000253457|ENST00000517349|SMIM18	ENSG00000253457|ENST00000517349|SMIM18	MSMS	A375_MHC_IP_R2	2	444.1648254394531	2	444.141935	886.269317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.849	1	99.609	99.109	100.11	0.75977								0	0	0	0.16876	1	37495	37495		0.79363	0.10326	1				13582	9860	9858	9934	13232	13232					-0.17836726334633113
EVLDDDTWEE	10	Unmodified	_EVLDDDTWEE_					0	0	0			REV__ENSG00000134480|ENST00000256897|CCNH	REV__ENSG00000134480|ENST00000256897|CCNH	MULTI-SECPEP	A375_MHC_IP_R2	2	626.1785278320312	2	625.756598	1249.49864	-0.86743	-0.0005428	0.82784	0.00051803	-0.039588	-2.4772E-05	625.757132964758	81.663	0.50592	82.406	82.128	82.634	0.74293					14	9	2	0	0	0	0.9269	1	31079	31079		3.5965	1.5367	1	2369700	+		13583	18782	9859	9935	13233	13233					-0.11612698040175928
EVLDKELFD	9	Unmodified	_EVLDKELFD_					0	0	0			REV__nc|ENSG00000133121|Q9Y3M8-4|STARD13	REV__nc|ENSG00000133121|Q9Y3M8-4|STARD13	MULTI-MSMS	A375_MHC_IP_R2	2	554.6990966796875	2	554.282054	1106.54956	-0.6841	-0.00037918	-1.0767	-0.00059679	-1.7608	-0.00097598	554.7803883529798	79.559	0.96404	80.304	79.744	80.708	0.74474					25	18	2	0	0	0	0.41409	1	30311	30311		24.021	1.2843	1	1634400	+		13584	18709	9860	9936	13234	13234					0.0005429579534848017
EVLDLLSQQF	10	Unmodified	_EVLDLLSQQF_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-SECPEP	A375_MHC_IP_R1	1	596.2340698242188	2	596.316428	1190.6183	-0.36515	-0.00021775	-4.2221	-0.0025177	-4.5873	-0.0027355	596.31620765432	103.16	0.35497	103.16	103.06	103.42	0					9	6	2	0	0	0	0.91909	1	37941	37941		9.3831	0.63772	1	855260	+		13585	16952	9861	9937	13235	13235					0.03061960095055838
EVLETRSAF	9	Unmodified	_EVLETRSAF_					0	0	0		ENSG00000113594|ENST00000453190|LIFR;LIFR|p.P918S|1|0.19|ENSG00000113594|chr5:38482137-38482137|G/A|missense_variant	ENSG00000113594|ENST00000453190|LIFR	ENSG00000113594|ENST00000453190|LIFR	MULTI-SECPEP	A375_MHC_IP_R1	1	526.675048828125	2	526.274564	1050.53457	-0.56684	-0.00029831	0.79522	0.0004185	0.22838	0.00012019	526.2752769329794	27.525	0.40417	27.525	27.229	27.634	0					10	7	2	0	0	0	0.58271	1	8386	8386		10.074	0	1	3414400			13586	3165	9862	9938	13236	13236					0.011328487179980584
EVLFSATANVH	11	Unmodified	_EVLFSATANVH_					0	0	0		ENSG00000170500|ENST00000393437|LONRF2;nc|ENSG00000170500|Q1L5Z9-2|LONRF2	ENSG00000170500|ENST00000393437|LONRF2	ENSG00000170500|ENST00000393437|LONRF2	MSMS	A375_MHC_IP_R1	1	594.23486328125	2	594.306395	1186.59824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.81	1	117.81	117.31	118.31	0								0	0	0	0.16191	1	43308	43308		8.7454	2.0222	1				13587	7513	9863	9939	13237	13237					0.012402091550711702
EVLFTRSHRSR	11	Unmodified	_EVLFTRSHRSR_					0	0	0			REV__ENSG00000132622|ENST00000254963|HSPA12B	REV__ENSG00000132622|ENST00000254963|HSPA12B	MSMS	A375_MHC_IP_R1	1	693.940673828125	2	694.381291	1386.74803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.02	1	125.02	124.52	125.52	0								0	0	0	0.16164	1	47357	47357		10.151	0.76745	1		+		13588	18667	9864	9940	13238	13238					0.07012574217560541
EVLGELQFNF	10	Unmodified	_EVLGELQFNF_					0	0	0		nc|ENSG00000188092|B7ZAQ6-2|GPR89A;ENST00000460277.5_1_1:145765021-145811987:-|nuORF;nc|ENSG00000188092|B7ZAQ6-3|GPR89A;ENSG00000188092|ENST00000314163|GPR89B;ENSG00000117262|ENST00000313835|GPR89A	nc|ENSG00000188092|B7ZAQ6-2|GPR89A	nc|ENSG00000188092|B7ZAQ6-2|GPR89A	MULTI-SECPEP	A375_MHC_IP_R2	2	398.9714660644531	3	399.20464	1194.59209	0.12337	4.925E-05	0.63116	0.00025196	0.75453	0.00030121	399.20494565703285	47.235	0.56076	47.996	47.664	48.225	0.76128					17	10	2	0	0	0	0.92957	1	17710	17710		1.5923	0	1	2332400			13589	3468	9865	9941	13239	13239					0.0025769092355858447
EVLGQKPQGP	10	Unmodified	_EVLGQKPQGP_					0	0	0		ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	MSMS	A375_MHC_IP_R2	2	526.9534912109375	2	526.790381	1051.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.635	1	45.404	44.904	45.904	0.7691								0	0	0	0.15353	1	16665	16665		9.3831	0.78985	1				13590	7068	9866	9942	13240	13240					0.04248841471940068
EVLGWRERS	9	Unmodified	_EVLGWRERS_					0	0	0		ENST00000470318.1_1_1:46650565-46651202:+|nuORF	ENST00000470318.1_1_1:46650565-46651202:+|nuORF	ENST00000470318.1_1_1:46650565-46651202:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	377.9400329589844	3	377.868362	1130.58326	-0.080223	-3.0314E-05	0.10802	4.0818E-05	0.027797	1.0504E-05	377.86845221363313	35.147	0.70742	35.911	35.475	36.183	0.76338					28	13	4	0	0	0	0.46465	1	12786	12786		15.739	1.3332	1	11316000			13591	12334	9867	9943	13241	13241					0.023187620777662232
EVLKRPEYF	9	Unmodified	_EVLKRPEYF_					0	0	0		nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-5|CNOT4;nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4	nc|ENSG00000080802|O95628-7|CNOT4	nc|ENSG00000080802|O95628-7|CNOT4	MULTI-SECPEP	A375_MHC_IP_R1	1	591.2203979492188	2	590.821681	1179.62881	-0.67578	-0.00039927	-1.1488	-0.00067876	-1.8246	-0.001078	590.8208160272063	140.26	0.20374	140.26	140.13	140.34	0					6	3	2	0	0	0	0.80005	1	53898	53898		2.0598	0	1	3166300			13592	14489	9868	9944	13242	13242					0.04617987540109425
EVLKRPEYF	9	Unmodified	_EVLKRPEYF_					0	0	0		nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-5|CNOT4;nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4	nc|ENSG00000080802|O95628-7|CNOT4	nc|ENSG00000080802|O95628-7|CNOT4	MULTI-MATCH	A375_MHC_IP_R2	2		2	590.821681	1179.62881	-0.37586	-0.00022206	-0.8109	-0.0004791	-1.1868	-0.00070116	590.8207799711943	140.23	0.20451	140.27	140.14	140.35	0.04216	0.0059445	0.00035607	NaN	2.0598	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	654750			13593	14489	9868	9944							0.04617987540109425
EVLLGDPLV	9	Unmodified	_EVLLGDPLV_					0	0	0		ENSG00000215474|ENST00000425639|SKOR2	ENSG00000215474|ENST00000425639|SKOR2	ENSG00000215474|ENST00000425639|SKOR2	MULTI-SECPEP	A375_MHC_IP_R2	2	478.17852783203125	2	477.778951	953.543348	-0.452	-0.00021595	0.25453	0.00012161	-0.19747	-9.4347E-05	477.778964557106	133.97	0.46069	134.13	133.91	134.37	0.16487					16	8	3	0	0	0	0.16229	1	52712	52712		57.471	3.8958	1	6615000			13594	9646	9869	9945	13243	13243					0.06471822354467349
EVLLYWWA	8	Unmodified	_EVLLYWWA_					0	0	0			REV__ENST00000556095.5_1_14:96831069-96831366:+|nuORF	REV__ENST00000556095.5_1_14:96831069-96831366:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	540.1806030273438	2	540.28166	1078.54877	-1.423	-0.00076884	1.3318	0.00071957	-0.091201	-4.9274E-05	540.7831993072092	53.122	0.50812	53.873	53.588	54.097	0.75105					14	9	2	0	0	0	0.97144	1	20048	20048		5.2307	0.90143	1	1952500	+		13595	26104	9870	9946	13244	13244					0.012635459369448654
EVLMVICVV	9	Unmodified	_EVLMVICVV_					0	0	0			REV__ENST00000233099.5_1_2:37268352-37268403:-|nuORF	REV__ENST00000233099.5_1_2:37268352-37268403:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	502.6635437011719	2	502.779582	1003.54461	-0.6068	-0.00030509	0.7524	0.00037829	0.1456	7.3203E-05	502.77996131066936	48.357	0.40287	49.114	48.929	49.332	0.75736					11	7	2	0	0	0	0.73363	1	18102	18102		6.7232	0	1	1727800	+		13596	23074	9871	9947	13245	13245					0.04297997127378039
EVLNIFSEIN	10	Unmodified	_EVLNIFSEIN_					0	0	0			REV__tr|U7STU1|U7STU1_FUSNUFidodomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01570PE=4SV=1	REV__tr|U7STU1|U7STU1_FUSNUFidodomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01570PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	393.60809326171875	3	393.208161	1176.60265	-0.62964	-0.00024758	0.69082	0.00027164	0.061181	2.4057E-05	393.2083849386086	25.452	0.96777	26.096	25.516	26.483	0.64368					37	18	3	0	0	0	0.68638	1	8520	8520		9.2438	1.2984	1	13260000	+		13597	28504	9872	9948	13246	13246					0.0214167357801216
EVLNIFSEIN	10	Unmodified	_EVLNIFSEIN_					0	0	0			REV__tr|U7STU1|U7STU1_FUSNUFidodomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01570PE=4SV=1	REV__tr|U7STU1|U7STU1_FUSNUFidodomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01570PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		3	393.208161	1176.60265	-0.24183	-9.5088E-05	0.30048	0.00011815	0.058652	2.3063E-05	393.20825761905036	26.086	0.86052	26.086	25.765	26.626	0	-0.0049316	-0.00023114	NaN	9.2438	37	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16517000	+		13598	28504	9872	9948							0.0214167357801216
EVLNKHLF	8	Unmodified	_EVLNKHLF_					0	0	0		ENST00000462000.1_1_2:174945834-174988397:-|nuORF;ENST00000396387.2_1_22:42503789-42504386:-|nuORF;ENST00000392560.6_1_2:174940156-174989039:-|nuORF;nc|ENSG00000138430|Q9NTK5-2|OLA1;ENSG00000138430|ENST00000284719|OLA1;nc|ENSG00000138430|Q9NTK5-3|OLA1	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	500.00469970703125	2	500.284734	998.554916	-0.30459	-0.00015238	1.0907	0.00054566	0.78611	0.00039328	500.2852543523414	63.138	0.66597	63.138	62.711	63.377	0					19	12	2	0	0	0	0.95423	1	22851	22851		7.9102	3.5809	1	1462400			13599	4992	9873	9949	13247	13247					0.05558064168474175
EVLNTEMANM	10	Unmodified	_EVLNTEMANM_					0	0	0			REV__ITGA4|p.G360E|1|0.44|ENSG00000115232|chr2:181485918-181485918|G/A|missense_variant	REV__ITGA4|p.G360E|1|0.44|ENSG00000115232|chr2:181485918-181485918|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	576.2391967773438	2	576.257199	1150.49985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.314	1	76.314	75.814	76.814	0								0	0	0	0.15451	1	27816	27816		6.2058	1.3088	1		+		13600	26801	9874	9950	13248	13248					-0.06938478476627097
EVLPRFQEV	9	Unmodified	_EVLPRFQEV_					0	0	0		ENST00000531380.1_1_11:86661829-86661901:-|nuORF	ENST00000531380.1_1_11:86661829-86661901:-|nuORF	ENST00000531380.1_1_11:86661829-86661901:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	373.2728271484375	3	372.873113	1115.59751	-0.30741	-0.00011462	0.15961	5.9515E-05	-0.14779	-5.5109E-05	372.87306295891983	29.44	0.35429	30.139	29.981	30.335	0.69872					13	6	3	0	0	0	0.71071	1	10317	10317		14.405	4.2548	1	4193900			13601	13168	9875	9951	13249	13249					0.04433414506047484
EVLRKNGIY	9	Unmodified	_EVLRKNGIY_					0	0	0			REV__tr|U7SLX9|U7SLX9_FUSNUATPasedynein-relatedAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01982PE=4SV=1	REV__tr|U7SLX9|U7SLX9_FUSNUATPasedynein-relatedAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01982PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	546.671630859375	2	546.314023	1090.61349	-0.65939	-0.00036023	-0.39522	-0.00021591	-1.0546	-0.00057615	546.3141686952771	52.711	0.66125	52.711	52.387	53.048	0					24	12	3	0	0	0	0.69504	1	18807	18807		12.532	0	1	2495700	+		13602	28282	9876	9952	13250	13250					0.07181120742961866
EVLRQIIK	8	Unmodified	_EVLRQIIK_					0	0	0			REV__ENST00000529172.1_1_11:68305336-68318669:+|nuORF	REV__ENST00000529172.1_1_11:68305336-68318669:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	500.22119140625	2	499.821484	997.628415	-0.68879	-0.00034427	-0.06698	-3.3478E-05	-0.75577	-0.00037775	499.82162403503054	71.017	0.50744	71.751	71.503	72.01	0.73421					19	9	3	0	0	0	0.972	1	27018	27018		9.3831	0	1	2663400	+		13603	17614	9877	9953	13251	13251					0.1295061261093906
EVLRQRKNWWK	11	Unmodified	_EVLRQRKNWWK_					0	0	0		ENSG00000145723|ENST00000399004|GIN1	ENSG00000145723|ENST00000399004|GIN1	ENSG00000145723|ENST00000399004|GIN1	MSMS	A375_MHC_IP_R2	2	771.928955078125	2	771.936234	1541.85791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.17	1	135.31	134.81	135.81	0.13901								0	0	0	0.16334	1	53156	53156		1.3295	0.92882	1				13604	5573	9878	9954	13252	13252					0.10865999556722272
EVLRRHRTYRW	11	Unmodified	_EVLRRHRTYRW_					0	0	0		ENSG00000139180|ENST00000266544|NDUFA9	ENSG00000139180|ENST00000266544|NDUFA9	ENSG00000139180|ENST00000266544|NDUFA9	MSMS	A375_MHC_IP_R2	2	524.6810913085938	3	524.627047	1570.85931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.168	1	95.918	95.418	96.418	0.75045								0	0	0	0.16316	1	36156	36156		2.2527	0	1				13605	5057	9879	9955	13253	13253					0.09671633645507427
EVLRTMLPV	9	Unmodified	_EVLRTMLPV_					0	0	0		ENST00000427497.3_1_17:17110364-17131447:-|nuORF;ENSG00000154803|ENST00000285071|FLCN	ENST00000427497.3_1_17:17110364-17131447:-|nuORF;ENSG00000154803|ENST00000285071|FLCN	ENSG00000154803|ENST00000285071|FLCN	MSMS	A375_MHC_IP_R2	2	529.1530151367188	2	529.307352	1056.60015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.51	1	63.253	62.753	63.753	0.74263								0	0	0	0.15486	1	23694	23694		11.64	0	1				13606	11821;6110	9880	9956	13254	13254					0.074115466393323
EVLVDNIWD	9	Unmodified	_EVLVDNIWD_					0	0	0			REV__nc|ENSG00000188677|Q9HBI1-3|PARVB	REV__nc|ENSG00000188677|Q9HBI1-3|PARVB	MULTI-MSMS	A375_MHC_IP_R2	2	552.43359375	2	551.774396	1101.53424	-0.78433	-0.00043277	-1.2786	-0.00070551	-2.063	-0.0011383	551.7742508640374	77.822	0.51128	78.565	78.315	78.827	0.74294					14	9	2	0	0	0	0.44024	1	29509	29509		22.736	2.2827	1	1544100	+		13607	22106	9881	9957	13255	13255					-0.012465710018659593
EVLVEIVAPA	10	Unmodified	_EVLVEIVAPA_					0	0	0		CCDC87|p.P621L|1|0.57|ENSG00000182791|chr11:66591154-66591154|G/A|missense_variant	CCDC87|p.P621L|1|0.57|ENSG00000182791|chr11:66591154-66591154|G/A|missense_variant	CCDC87|p.P621L|1|0.57|ENSG00000182791|chr11:66591154-66591154|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	520.7045288085938	2	520.305332	1038.59611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.34	1	130.34	129.84	130.84	0								0	0	0	0.048075	1	50156	50156		52.268	23.187	1				13608	320	9882	9958	13256	13256					0.07835780417281057
EVLVEIVAPA	10	Unmodified	_EVLVEIVAPA_					0	0	0		CCDC87|p.P621L|1|0.57|ENSG00000182791|chr11:66591154-66591154|G/A|missense_variant	CCDC87|p.P621L|1|0.57|ENSG00000182791|chr11:66591154-66591154|G/A|missense_variant	CCDC87|p.P621L|1|0.57|ENSG00000182791|chr11:66591154-66591154|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	520.7051391601562	2	520.305332	1038.59611	-0.66754	-0.00034733	0.31032	0.00016146	-0.35722	-0.00018586	520.3052007707583	130.11	0.30444	130.32	130.15	130.45	0.2142					10	5	3	0	0	0	0.14594	1	51137	51137		54.774	20.671	1	17155000			13609	320	9882	9958	13257	13257					0.07835780417281057
EVLYCIFT	8	Unmodified	_EVLYCIFT_					0	0	0		LRRC40|p.R516C|1|0.35|ENSG00000066557|chr1:70148644-70148644|G/A|missense_variant	LRRC40|p.R516C|1|0.35|ENSG00000066557|chr1:70148644-70148644|G/A|missense_variant	LRRC40|p.R516C|1|0.35|ENSG00000066557|chr1:70148644-70148644|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	494.17425537109375	2	494.246429	986.478305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.903	1	25.903	25.403	26.403	0								0	0	0	0.16876	1	7636	7636		26.341	0	1				13610	14317	9883	9959	13258	13258					-0.015474954430260368
EVLYFPDRWWH	11	Unmodified	_EVLYFPDRWWH_					0	0	0		nc|ENSG00000161999|Q96S16-2|JMJD8;ENSG00000161999|ENST00000609261|JMJD8;ENST00000569441.5_1_16:732796-733478:-|nuORF	nc|ENSG00000161999|Q96S16-2|JMJD8	nc|ENSG00000161999|Q96S16-2|JMJD8	MSMS	A375_MHC_IP_R1	1	774.5028076171875	2	774.375143	1546.73573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.3	1	110.3	109.8	110.8	0								0	0	0	0.16302	1	40446	40446		2.9952	1.8019	1				13611	6501	9884	9960	13259	13259					-0.01576462245498078
EVLYTIGTGSY	11	Unmodified	_EVLYTIGTGSY_					0	0	0		nc|ENSG00000117650|P51955-2|NEK2;nc|ENSG00000117650|P51955-4|NEK2;ENSG00000117650|ENST00000366999|NEK2;nc|ENSG00000117650|P51955-3|NEK2	nc|ENSG00000117650|P51955-2|NEK2	nc|ENSG00000117650|P51955-2|NEK2	MULTI-MSMS	A375_MHC_IP_R1	1	602.334716796875	2	601.800611	1201.58667	-0.31482	-0.00018946	1.1961	0.00071984	0.88132	0.00053038	601.8009974581104	102.1	0.50576	102.1	101.9	102.4	0					16	9	2	0	0	0	0.60747	1	37618	37618		22.736	5.6234	1	2229100			13612	3505	9885	9961	13260	13260					-0.006060326588794851
EVMDTRVIH	9	Unmodified	_EVMDTRVIH_					0	0	0		ENSG00000213676|ENST00000375203|ATF6B;nc|ENSG00000213676|Q99941-2|ATF6B	ENSG00000213676|ENST00000375203|ATF6B	ENSG00000213676|ENST00000375203|ATF6B	MULTI-MSMS	A375_MHC_IP_R2	2	367.5961608886719	3	367.190336	1098.54918	0.20209	7.4206E-05	-0.26667	-9.7919E-05	-0.064578	-2.3712E-05	367.19033224439494	42.112	0.35725	42.884	42.656	43.014	0.7724					8	6	2	0	0	0	0.60101	1	15660	15660		14.405	0	1	1174100			13613	9577	9886	9962	13261	13261					0.003845975945068858
EVMEPCCYCMH	11	Unmodified	_EVMEPCCYCMH_					0	0	0			REV__POGZ|p.G685Tfs*22|1|0.44|ENSG00000143442|chr1:151408702-151408703|-/TGGT|frameshift_variant	REV__POGZ|p.G685Tfs*22|1|0.44|ENSG00000143442|chr1:151408702-151408703|-/TGGT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	449.6192626953125	3	448.823174	1343.44769	-0.0091926	-4.1259E-06	0.35227	0.00015811	0.34308	0.00015398	449.1576096596209	43.395	0.50921	43.395	43.197	43.706	0					19	8	3	0	0	0	1.0014	1	15173	15173		0	0	1	2156700	+		13614	19358	9887	9963	13262	13262					-0.21029424477887915
EVMEPCCYCMH	11	Unmodified	_EVMEPCCYCMH_					0	0	0			REV__POGZ|p.G685Tfs*22|1|0.44|ENSG00000143442|chr1:151408702-151408703|-/TGGT|frameshift_variant	REV__POGZ|p.G685Tfs*22|1|0.44|ENSG00000143442|chr1:151408702-151408703|-/TGGT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	449.6190185546875	3	448.823174	1343.44769	-0.23039	-0.0001034	-0.2431	-0.00010911	-0.47348	-0.00021251	448.82369327082574	42.95	0.60737	43.722	43.421	44.028	0.7724					28	11	4	0	0	0	1.0014	1	15928	15928		0	0	1	2523900	+		13615	19358	9887	9963	13263	13263					-0.21029424477887915
EVMIRDTWQRY	11	Unmodified	_EVMIRDTWQRY_					0	0	0			REV__PDE4A|p.A611V|1|0.43|ENSG00000065989|chr19:10463881-10463881|C/T|missense_variant	REV__PDE4A|p.A611V|1|0.43|ENSG00000065989|chr19:10463881-10463881|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	499.6544189453125	3	499.582004	1495.72418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.068	1	30.068	29.568	30.568	0								0	0	0	0.16331	1	9505	9505		0.50596	0.051438	1		+		13616	27755	9888	9964	13264	13264					-0.0038502733114000876
EVMKWNGWGY	10	Unmodified	_EVMKWNGWGY_					0	0	0		ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	MULTI-MSMS	A375_MHC_IP_R2	2	423.9278259277344	3	423.862219	1268.56483	-0.37066	-0.00015711	0.49885	0.00021144	0.1282	5.4337E-05	423.8623550232482	34.575	1.7233	35.336	34.913	36.636	0.76097					48	33	2	0	0	0	0.71944	1	12614	12614		1.7423	0.14999	1	2832400			13617	1047	9889	9965	13265	13265					-0.05871115888476197
EVMLENFAL	9	Unmodified	_EVMLENFAL_					0	0	0		ENSG00000171649|ENST00000597850|ZIK1	ENSG00000171649|ENST00000597850|ZIK1	ENSG00000171649|ENST00000597850|ZIK1	MULTI-MSMS	A375_MHC_IP_R1	1	533.6669311523438	2	533.267893	1064.52123	-0.47836	-0.00025509	0.57457	0.0003064	0.096216	5.1309E-05	533.2680615191807	82.428	0.55888	82.428	82.214	82.772	0					16	10	2	0	0	0	0.69674	1	30213	30213		7.2892	0.56607	1	2606400			13618	7624	9890	9966	13266	13266					-0.00844725385604761
EVMQCSHFL	9	Unmodified	_EVMQCSHFL_					0	0	0			REV__ENST00000401044.7_1_1:59134235-59156019:-|nuORF	REV__ENST00000401044.7_1_1:59134235-59156019:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	547.6441040039062	2	547.243895	1092.47324	-0.77541	-0.00042434	0.76755	0.00042004	-0.0078631	-4.303E-06	547.2444725873197	73.075	0.76339	73.81	73.53	74.294	0.73541					36	14	3	0	0	0	0.4867	1	27713	27713		20.454	20.454	1	5044300	+		13619	20272	9891	9967	13267	13267					-0.06930122577273323
EVMQCSHFL	9	Unmodified	_EVMQCSHFL_					0	0	0			REV__ENST00000401044.7_1_1:59134235-59156019:-|nuORF	REV__ENST00000401044.7_1_1:59134235-59156019:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	547.243895	1092.47324	-0.54191	-0.00029656	0.44061	0.00024112	-0.1013	-5.5435E-05	547.2443252610192	73.665	0.96239	73.665	73.386	74.349	0	-0.072432	-0.00020933	NaN	20.454	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6631700	+		13620	20272	9891	9967							-0.06930122577273323
EVMQFCWLQPE	11	Unmodified	_EVMQFCWLQPE_					0	0	0		ENSG00000181409|ENST00000326724|AATK;nc|ENSG00000181409|Q6ZMQ8-3|AATK	ENSG00000181409|ENST00000326724|AATK	ENSG00000181409|ENST00000326724|AATK	MSMS	A375_MHC_IP_R2	2	705.7122192382812	2	705.315048	1408.61554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.427	1	95.171	94.671	95.671	0.74474								0	0	0	0.16124	1	35885	35885		12.241	6.5088	1				13621	8345	9892	9968	13268	13268					-0.07241954625760627
EVMREWYQETH	11	Unmodified	_EVMREWYQETH_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-SECPEP	A375_MHC_IP_R1	1	502.6580505371094	3	503.225997	1506.65616	-0.50665	-0.00025496	-2.3875	-0.0012014	-2.8941	-0.0014564	503.55894634504733	86.907	0.15256	86.907	86.831	86.983	0					4	2	2	0	0	0	1.0011	1	31881	31881		0.08335	0	1	933720			13622	4343	9893	9969	13269	13269					-0.0768989698178757
EVNCLSFNPYS	11	Unmodified	_EVNCLSFNPYS_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-4|RBBP4;ENST00000486166.1_1_X:16870817-16871009:-|nuORF	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MSMS	A375_MHC_IP_R1	1	636.833984375	2	636.781896	1271.54924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.102	1	87.102	86.602	87.602	0								0	0	0	0.16203	1	31954	31954		8.1555	1.9497	1				13623	6544	9894	9970	13270	13270					-0.07567447196174726
EVNDRKAEF	9	Unmodified	_EVNDRKAEF_					0	0	0		nc|ENSG00000054267|Q4LE39-2|ARID4B;ENSG00000054267|ENST00000264183|ARID4B;ENST00000491632.5_1_1:235341091-235490234:-|nuORF;nc|ENSG00000054267|Q4LE39-3|ARID4B;nc|ENSG00000054267|Q4LE39-4|ARID4B	nc|ENSG00000054267|Q4LE39-2|ARID4B	nc|ENSG00000054267|Q4LE39-2|ARID4B	MSMS	A375_MHC_IP_R2	2	554.21337890625	2	554.275095	1106.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.086	1	49.844	49.344	50.344	0.75737								0	0	0	0.14056	1	18440	18440		31.268	4.3847	1				13624	1257	9895	9971	13271	13271					-0.013369369131169151
EVNHQPQTHHR	11	Unmodified	_EVNHQPQTHHR_					0	0	0			REV__ENST00000541786.5_2_12:118693425-118704478:-|nuORF	REV__ENST00000541786.5_2_12:118693425-118704478:-|nuORF	MSMS	A375_MHC_IP_R2	2	691.7060546875	2	691.837248	1381.65994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.981	1	90.713	90.213	91.213	0.7318								0	0	0	0.16265	1	34238	34238		4.897	1.3005	1		+		13625	25960	9896	9972	13272	13272					-0.01562046373078374
EVNIWCINGCY	11	Unmodified	_EVNIWCINGCY_					0	0	0			REV__ENSG00000180083|ENST00000324384|WFDC11	REV__ENSG00000180083|ENST00000324384|WFDC11	MSMS	A375_MHC_IP_R1	1	657.23095703125	2	657.286291	1312.55803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.539	1	79.539	79.039	80.039	0								0	0	0	0.16249	1	29035	29035		5.7319	0	1		+		13626	21594	9897	9973	13273	13273					-0.08574796831317144
EVNIYLQHI	9	Unmodified	_EVNIYLQHI_					0	0	0			REV__ENST00000428062.1_1_13:37512878-37513004:-|nuORF	REV__ENST00000428062.1_1_13:37512878-37513004:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	376.62127685546875	3	376.873113	1127.59751	0.35845	0.00013509	-0.35144	-0.00013245	0.0070035	2.6394E-06	376.87283016715116	46.523	0.45842	47.288	47.159	47.617	0.76519					12	8	2	0	0	0	0.73363	1	17452	17452		0.77653	0	1	1586300	+		13627	24673	9898	9974	13274	13274					0.038814145060541705
EVNKNETN	8	Unmodified	_EVNKNETN_					0	0	0			REV__ENSG00000196074|ENST00000357552|SYCP2	REV__ENSG00000196074|ENST00000357552|SYCP2	MSMS	A375_MHC_IP_R2	2	474.163818359375	2	474.225071	946.435589	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.554	1	46.319	45.819	46.819	0.76519								0	0	0	0.16876	1	17033	17033		25.399	3.6527	1		+		13628	22155	9899	9975	13275	13275					-0.039771742468929006
EVNLPEVTQL	10	Unmodified	_EVNLPEVTQL_					0	0	0		ENST00000470655.5_1_22:37593867-37594071:-|nuORF	ENST00000470655.5_1_22:37593867-37594071:-|nuORF	ENST00000470655.5_1_22:37593867-37594071:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	571.1704711914062	2	571.308603	1140.60265	-0.66489	-0.00037986	-0.052067	-2.9746E-05	-0.71696	-0.00040961	571.3084890757441	67.812	0.4035	67.812	67.654	68.057	0					9	7	2	0	0	0	0.8866	1	24592	24592		14.405	1.3629	1	893930			13629	12340	9900	9976	13276	13276					0.037976735780148374
EVNMQEYPDL	10	Unmodified	_EVNMQEYPDL_					0	0	0		nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L;nc|ENSG00000185404|Q9H930-3|SP140L;nc|ENSG00000185404|Q9H930-1|SP140L	nc|ENSG00000185404|Q9H930-2|SP140L	nc|ENSG00000185404|Q9H930-2|SP140L	MSMS	A375_MHC_IP_R2	2	413.1463928222656	3	413.185028	1236.53325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.03	1	111.76	111.26	112.26	0.73692								0	0	0	0.15531	1	41871	41871		1.7423	0.28716	1				13630	8663	9901	9977	13277	13277					-0.07555153433054329
EVNQPRPYFIY	11	Unmodified	_EVNQPRPYFIY_					0	0	0			REV__ENST00000457871.2_1_12:6459074-6463691:-|nuORF	REV__ENST00000457871.2_1_12:6459074-6463691:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	476.31005859375	3	475.910227	1424.70885	-0.48676	-0.00023166	0.27444	0.00013061	-0.21232	-0.00010104	475.91032834356514	54.72	0.61132	54.72	54.364	54.975	0					20	11	3	0	0	0	0.73135	1	19556	19556		3.8459	0	1	3374200	+		13631	17664	9902	9978	13278	13278					0.013484291433314866
EVNRLTQPHW	10	Unmodified	_EVNRLTQPHW_					0	0	0			REV__ENSG00000273559|ENST00000614790|CWC25	REV__ENSG00000273559|ENST00000614790|CWC25	MULTI-SECPEP	A375_MHC_IP_R2	2	640.7300415039062	2	640.330736	1278.64692	-1.0508	-0.00067287	0.10017	6.4142E-05	-0.95065	-0.00060873	640.3309606776921	56.309	0.4073	57.059	56.796	57.203	0.75014					10	7	2	0	0	0	0.88918	1	21303	21303		13.042	0	1	2047700	+		13632	22952	9903	9979	13279	13279					0.018741225148460217
EVNRMLTP	8	Unmodified	_EVNRMLTP_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.E39K|1|0.46|ENSG00000157423|chr16:71186781-71186781|C/T|missense_variant;nc|ENSG00000157423|Q4G0P3-6|HYDIN;nc|ENSG00000157423|Q4G0P3-10|HYDIN;nc|ENSG00000157423|Q4G0P3-8|HYDIN;nc|ENSG00000157423|Q4G0P3-5|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	A375_MHC_IP_R1	1	480.673828125	2	480.252577	958.490601	-0.3503	-0.00016823	-1.1533	-0.00055388	-1.5036	-0.00072211	480.25251429211517	40.35	0.61175	40.35	40.1	40.712	0					36	11	4	0	0	0	0.73946	1	13783	13783		23.148	0.41214	1	4989600			13633	6242	9904	9980	13280	13280					0.009695410200151855
EVNSDAGAF	9	Unmodified	_EVNSDAGAF_					0	0	0		nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-3|SRP68;ENST00000586859.1_1_17:74039843-74041464:-|nuORF	nc|ENSG00000167881|Q9UHB9-2|SRP68	nc|ENSG00000167881|Q9UHB9-2|SRP68	MULTI-MSMS	A375_MHC_IP_R1	1	455.6009826660156	2	455.201064	908.387576	-0.22216	-0.00010113	-0.10685	-4.864E-05	-0.32901	-0.00014977	455.2009698680305	73.213	0.45653	73.213	72.93	73.386	0					17	8	3	0	0	0	0.63811	1	26646	26646		12.532	0.89125	1	1316900			13634	7233	9905	9981	13281	13281					-0.0702824816694374
EVNSDAGAF	9	Unmodified	_EVNSDAGAF_					0	0	0		nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-3|SRP68;ENST00000586859.1_1_17:74039843-74041464:-|nuORF	nc|ENSG00000167881|Q9UHB9-2|SRP68	nc|ENSG00000167881|Q9UHB9-2|SRP68	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	455.201064	908.387576	-0.3328	-0.00015149	-0.13251	-6.0318E-05	-0.46531	-0.00021181	455.20095425181836	72.434	0.66016	73.17	72.973	73.633	0.7354	-0.021565	-8.4499E-06	NaN	12.532	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1559800			13635	7233	9905	9981							-0.0702824816694374
EVNSYLADI	9	Unmodified	_EVNSYLADI_					0	0	0			REV__MSH4|p.P805S|1|0.93|ENSG00000057468|chr1:75897964-75897964|C/T|missense_variant	REV__MSH4|p.P805S|1|0.93|ENSG00000057468|chr1:75897964-75897964|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	513.20556640625	2	512.253297	1022.49204	-0.70762	-0.00036248	-0.5414	-0.00027734	-1.249	-0.00063981	512.2531119137801	78.482	1.1176	79.227	78.828	79.946	0.74474					39	21	3	0	0	0	0.6898	1	29959	29959		7.9102	0	1	3100200	+		13636	27041	9906	9982	13282	13282					-0.018305464102581936
EVNVLWQEV	9	Unmodified	_EVNVLWQEV_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-SECPEP	A375_MHC_IP_R2	2	373.2728271484375	3	372.529235	1114.56587	-0.26784	-9.9777E-05	0.76032	0.00028324	0.49248	0.00018346	372.52952124866295	29.458	0.45329	30.157	30.032	30.485	0.69872					14	8	3	0	0	0	0.75842	1	10317	10317		8.7454	0	1	2167800	+		13637	21924	9907	9983	13283	13283					0.01317421752082737
EVNVSLNNL	9	Unmodified	_EVNVSLNNL_					0	0	0			REV__nc|ENSG00000170632|Q8N2F6-6|ARMC10	REV__nc|ENSG00000170632|Q8N2F6-6|ARMC10	MULTI-SECPEP	A375_MHC_IP_R2	2	501.17803955078125	2	501.266739	1000.51892	-0.45405	-0.0002276	-0.94059	-0.00047149	-1.3946	-0.00069909	501.2662037530953	86.508	0.35805	87.241	87.1	87.458	0.733					9	6	2	0	0	0	0.50702	1	32953	32953		19.257	0	1	795840	+		13638	21010	9908	9984	13284	13284					0.01868562200957058
EVNYKNDL	8	Unmodified	_EVNYKNDL_					0	0	0			REV__tr|U7SJF1|U7SJF1_FUSNUThiamine-phosphatepyrophosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02118PE=4SV=1	REV__tr|U7SJF1|U7SJF1_FUSNUThiamine-phosphatepyrophosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02118PE=4SV=1	MSMS	A375_MHC_IP_R1	1	497.6533508300781	2	497.745639	993.476725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.997	1	39.997	39.497	40.497	0								0	0	0	0.16272	1	13715	13715		43.858	2.0187	1		+		13639	28231	9909	9985	13285	13285					-0.020274132074405316
EVPAPQYIQW	10	Unmodified	_EVPAPQYIQW_					0	0	0			REV__ENST00000361720.9_1_1:27220846-27223967:-|nuORF	REV__ENST00000361720.9_1_1:27220846-27223967:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	616.06494140625	2	615.811313	1229.60807	-0.59671	-0.00036746	-2.6153	-0.0016105	-3.212	-0.001978	615.8100104834067	102.22	0.71113	102.98	102.57	103.28	0.76428					16	13	2	0	0	0	0.83355	1	38786	38786		17.113	0.54702	1	1169600	+		13640	23920	9910	9986	13286	13286					0.002453971604609251
EVPCLPEGADP	11	Unmodified	_EVPCLPEGADP_					0	0	0		ENSG00000099991|ENST00000263119|CABIN1;nc|ENSG00000099991|Q9Y6J0-2|CABIN1	ENSG00000099991|ENST00000263119|CABIN1	ENSG00000099991|ENST00000263119|CABIN1	MULTI-SECPEP	A375_MHC_IP_R1	1	375.5841064453125	3	376.174352	1125.50123	0.58135	0.00021869	0.89778	0.00033772	1.4791	0.00055641	376.1746893294155	21.417	0.50768	21.417	21.148	21.656	0					12	9	2	0	0	0	0.99227	1	5680	5680		1.2148	0	1	946940			13641	2097	9911	9987	13287	13287					-0.056505211161947955
EVPDVAHLPL	10	Unmodified	_EVPDVAHLPL_					0	0	0		ENST00000361997.9_1_8:133790074-133829825:+|nuORF;ENST00000395383.5_1_8:133790074-133836319:+|nuORF;nc|ENSG00000129292|A8MW92-4|PHF20L1;ENSG00000129292|ENST00000395386|PHF20L1	ENST00000361997.9_1_8:133790074-133829825:+|nuORF;ENSG00000129292|ENST00000395386|PHF20L1	ENSG00000129292|ENST00000395386|PHF20L1	MULTI-MSMS	A375_MHC_IP_R2	2	545.7007446289062	2	545.300581	1088.58661	-0.77067	-0.00042025	0.7032	0.00038346	-0.067464	-3.6788E-05	545.3010260298255	103.66	0.81268	104.42	103.99	104.8	0.76428					33	15	3	0	0	0	0.33603	1	39238	39238		37.974	0	1	5626400			13642	4184;11056	9912	9988	13288	13288					0.0458601213174461
EVPDVAHLPL	10	Unmodified	_EVPDVAHLPL_					0	0	0		ENST00000361997.9_1_8:133790074-133829825:+|nuORF;ENST00000395383.5_1_8:133790074-133836319:+|nuORF;nc|ENSG00000129292|A8MW92-4|PHF20L1;ENSG00000129292|ENST00000395386|PHF20L1	ENST00000361997.9_1_8:133790074-133829825:+|nuORF;ENSG00000129292|ENST00000395386|PHF20L1	ENSG00000129292|ENST00000395386|PHF20L1	MULTI-MATCH	A375_MHC_IP_R1	1		2	545.300581	1088.58661	-0.50337	-0.00027449	0.39084	0.00021312	-0.11253	-6.1363E-05	545.3007967063179	104.53	0.81062	104.53	104.18	104.99	0	0.054969	-0.00018046	NaN	37.974	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5917600			13643	4184;11056	9912	9988							0.0458601213174461
EVPDVAHLPL	10	Unmodified	_EVPDVAHLPL_					0	0	0		ENST00000361997.9_1_8:133790074-133829825:+|nuORF;ENST00000395383.5_1_8:133790074-133836319:+|nuORF;nc|ENSG00000129292|A8MW92-4|PHF20L1;ENSG00000129292|ENST00000395386|PHF20L1	ENST00000361997.9_1_8:133790074-133829825:+|nuORF;ENSG00000129292|ENST00000395386|PHF20L1	ENSG00000129292|ENST00000395386|PHF20L1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	545.300581	1088.58661	-0.77067	-0.00042025	0.7032	0.00038346	-0.067464	-3.6788E-05	545.3010260298255	103.66	0.81268	104.42	103.99	104.8	0.76428	-0.054969	0.0001602	NaN	37.974	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5626400			13644	4184;11056	9912	9988							0.0458601213174461
EVPEFRNYKQ	10	Unmodified	_EVPEFRNYKQ_					0	0	0		ENSG00000048342|ENST00000424120|CC2D2A;nc|ENSG00000048342|Q9P2K1-2|CC2D2A	ENSG00000048342|ENST00000424120|CC2D2A	ENSG00000048342|ENST00000424120|CC2D2A	MULTI-SECPEP	A375_MHC_IP_R1	1	655.7847290039062	2	655.330402	1308.64625	-0.56671	-0.00037138	0.58064	0.00038051	0.013925	9.1257E-06	655.3309024550533	94.916	1.3219	94.916	94.343	95.665	0					28	25	2	0	0	0	0.91909	1	35016	35016		9.3831	6.3879	1	2890100			13645	1211	9913	9989	13289	13289					0.004272830751233414
EVPGMGLGQS	10	Unmodified	_EVPGMGLGQS_					0	0	0			REV__nc|ENSG00000137275|Q13546-2|RIPK1	REV__nc|ENSG00000137275|Q13546-2|RIPK1	MSMS	A375_MHC_IP_R2	2	487.6775817871094	2	487.734217	973.453881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.79	1	41.565	41.065	42.065	0.77451								0	0	0	0.14601	1	15116	15116		25.399	9.5521	1		+		13646	18997	9914	9990	13290	13290					-0.03390755596547024
EVPGRKRRRK	10	Unmodified	_EVPGRKRRRK_					0	0	0			REV__ENST00000466336.5_1_6:31940188-31948320:+|nuORF	REV__ENST00000466336.5_1_6:31940188-31948320:+|nuORF	MSMS	A375_MHC_IP_R1	1	641.4254150390625	2	641.402361	1280.79017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.71	1	105.71	105.21	106.21	0								0	0	0	0.15451	1	38806	38806		6.2058	1.8765	1		+		13647	22506	9915	9991	13291	13291					0.16100594416593594
EVPIDSSSTF	10	Unmodified	_EVPIDSSSTF_					0	0	0			REV__nc|nan|Q6P1S2-2|C3orf33	REV__nc|nan|Q6P1S2-2|C3orf33	MSMS	A375_MHC_IP_R1	1	541.1748657226562	2	541.256037	1080.49752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.018	1	91.018	90.518	91.518	0								0	0	0	0.14741	1	33444	33444		22.736	0.98964	1		+		13648	21313	9916	9992	13292	13292					-0.03950867618414122
EVPLAGLRRLL	11	Unmodified	_EVPLAGLRRLL_					0	0	0		ENSG00000176894|ENST00000317479|PXMP2	ENSG00000176894|ENST00000317479|PXMP2	ENSG00000176894|ENST00000317479|PXMP2	MSMS	A375_MHC_IP_R2	2	618.7096557617188	2	618.892972	1235.77139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.775	1	95.52	95.02	96.02	0.74474								0	0	0	0.16302	1	36011	36011		2.9952	1.151	1				13649	8039	9917	9993	13293	13293					0.16293620002193165
EVPPPPRTL	9	Unmodified	_EVPPPPRTL_					0	0	0		ENST00000585896.5_1_19:14020678-14030767:+|nuORF;ENST00000589138.5_1_19:14029331-14037891:+|nuORF;nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A	ENST00000585896.5_1_19:14020678-14030767:+|nuORF	ENST00000585896.5_1_19:14020678-14030767:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	503.6898193359375	2	503.290017	1004.56548	-0.28654	-0.00014421	-0.10786	-5.4283E-05	-0.3944	-0.0001985	503.28998352876624	62.94	0.66579	62.94	62.66	63.326	0					29	12	3	0	0	0	0.60917	1	22724	22724		13.906	0	1	6670400			13650	4370	9918	9994	13294	13294					0.06338046822895649
EVPRRSGL	8	Unmodified	_EVPRRSGL_					0	0	0		ENSG00000071655|ENST00000434436|MBD3	ENSG00000071655|ENST00000434436|MBD3	ENSG00000071655|ENST00000434436|MBD3	MULTI-MSMS	A375_MHC_IP_R1	1	457.66455078125	2	457.264333	912.514114	-0.0093697	-4.2844E-06	0.19438	8.8882E-05	0.18501	8.4597E-05	457.26432263275507	109.18	6.309	109.18	107.95	114.26	0					351	123	3	0	0	0	0.7773	1	39625	39625		4.756	2.4533	1	34386000			13651	1517	9919	9995	13295	13295					0.05435722848869773
EVPSAELHSFP	11	Unmodified	_EVPSAELHSFP_					0	0	0			REV__ENST00000522678.5_1_2:219126952-219127120:+|nuORF	REV__ENST00000522678.5_1_2:219126952-219127120:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	607.1975708007812	2	606.798403	1211.58225	-0.32064	-0.00019456	-0.29788	-0.00018075	-0.61852	-0.00037532	606.7979358681748	92.163	0.60509	92.902	92.585	93.19	0.73902					26	11	3	0	0	0	0.71172	1	35038	35038		31.268	5.0002	1	3918500	+		13652	25734	9920	9996	13296	13296					-0.015074970818204747
EVPSAVLVVH	10	Unmodified	_EVPSAVLVVH_					0	0	0		EPHB6|p.P493L|1|0.35|ENSG00000106123|chr7:142866496-142866496|C/T|missense_variant	EPHB6|p.P493L|1|0.35|ENSG00000106123|chr7:142866496-142866496|C/T|missense_variant	EPHB6|p.P493L|1|0.35|ENSG00000106123|chr7:142866496-142866496|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	525.5414428710938	2	525.303124	1048.5917	-0.60233	-0.00031641	0.10605	5.571E-05	-0.49628	-0.0002607	525.3037386280917	70.878	0.65916	71.612	71.402	72.061	0.73421					19	12	2	0	0	0	0.53946	1	27037	27037		25.399	7.253	1	2924500			13653	13949	9921	9997	13297	13297					0.06934315994362805
EVPSAVLVVH	10	Unmodified	_EVPSAVLVVH_					0	0	0		EPHB6|p.P493L|1|0.35|ENSG00000106123|chr7:142866496-142866496|C/T|missense_variant	EPHB6|p.P493L|1|0.35|ENSG00000106123|chr7:142866496-142866496|C/T|missense_variant	EPHB6|p.P493L|1|0.35|ENSG00000106123|chr7:142866496-142866496|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	525.303124	1048.5917	-0.24856	-0.00013057	0.19869	0.00010437	-0.049865	-2.6194E-05	525.3032860812117	71.825	0.40259	71.825	71.615	72.018	0	0.10614	2.1127E-05	NaN	25.399	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2851800			13654	13949	9921	9997							0.06934315994362805
EVPSHVLSKV	10	Unmodified	_EVPSHVLSKV_					0	0	0		ENST00000529735.1_1_11:120490688-120490838:-|nuORF	ENST00000529735.1_1_11:120490688-120490838:-|nuORF	ENST00000529735.1_1_11:120490688-120490838:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	547.67919921875	2	547.813856	1093.61316	-0.60277	-0.00033021	-0.2107	-0.00011543	-0.81347	-0.00044563	547.8136900363093	58.829	0.61143	58.829	58.582	59.194	0					36	11	4	0	0	0	0.42334	1	21114	21114		29.841	3.8199	1	30184000			13655	13138	9922	9998	13298	13298					0.0700970102309384
EVPVPSSLMPD	11	Unmodified	_EVPVPSSLMPD_					0	0	0		nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;HELZ2|p.D2407Afs*38|1|0.4|ENSG00000130589|chr20:63560856-63560856|T/-|frameshift_variant	nc|ENSG00000130589|Q9BYK8|HELZ2	nc|ENSG00000130589|Q9BYK8|HELZ2	MULTI-SECPEP	A375_MHC_IP_R1	1	391.2620849609375	3	390.861885	1169.56383	0.11379	4.4477E-05	0.46189	0.00018054	0.57569	0.00022501	390.86188721712864	31.97	0.46136	31.97	31.769	32.231	0					13	8	2	0	0	0	0.95991	1	10332	10332		10.315	5.5993	1	1845400			13656	14599	9923	9999	13299	13299					-0.014173750480040326
EVQEDHYWEQL	11	Unmodified	_EVQEDHYWEQL_					0	0	0		ENSG00000013523|ENST00000251089|ANGEL1	ENSG00000013523|ENST00000251089|ANGEL1	ENSG00000013523|ENST00000251089|ANGEL1	MSMS	A375_MHC_IP_R2	2	492.4508361816406	3	492.552768	1474.63647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.638	1	33.375	32.875	33.875	0.73692								0	0	0	0.16309	1	11635	11635		2.6312	1.039	1				13657	1024	9924	10000	13300	13300					-0.08185949720905228
EVQEENDF	8	Unmodified	_EVQEENDF_					0	0	0		ENSG00000025293|ENST00000374012|PHF20	ENSG00000025293|ENST00000374012|PHF20	ENSG00000025293|ENST00000374012|PHF20	MULTI-MSMS	A375_MHC_IP_R2	2	505.1947937011719	2	505.209086	1008.40362	-0.94461	-0.00047723	0.21006	0.00010612	-0.73456	-0.0003711	505.20915933235455	36.412	1.0174	37.183	36.799	37.816	0.7709					41	19	3	0	0	0	0.7758	1	13321	13321		10.183	0	1	18105000			13658	1087	9925	10001	13301	13301					-0.1002458672070361
EVQERKQF	8	Unmodified	_EVQERKQF_					0	0	0			REV__ENST00000380289.2_1_X:16170776-16171058:+|nuORF	REV__ENST00000380289.2_1_X:16170776-16171058:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	532.1764526367188	2	532.28018	1062.54581	-0.66442	-0.00035366	-0.22434	-0.00011941	-0.88877	-0.00047307	532.2799731461932	41.928	1.0201	42.702	42.149	43.169	0.77451					44	19	4	0	0	0	0.71817	1	15709	15709		29.082	0	1	27247000	+		13659	24213	9926	10002	13302	13302					0.01703670812139535
EVQGMQEAL	9	Unmodified	_EVQGMQEAL_					0	0	0		ENSG00000083093|ENST00000261584|PALB2	ENSG00000083093|ENST00000261584|PALB2	ENSG00000083093|ENST00000261584|PALB2	MSMS	A375_MHC_IP_R1	1	502.6689758300781	2	502.739499	1003.46445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.441	1	96.441	95.941	96.941	0								0	0	0	0.15486	1	35443	35443		11.64	1.5664	1				13660	1770	9927	10003	13303	13303					-0.03714772942112177
EVQHQYKEKQ	10	Unmodified	_EVQHQYKEKQ_					0	0	0		ENST00000502875.1_1_4:141563950-141565549:-|nuORF	ENST00000502875.1_1_4:141563950-141565549:-|nuORF	ENST00000502875.1_1_4:141563950-141565549:-|nuORF	MSMS	A375_MHC_IP_R1	1	439.6141052246094	3	439.557964	1315.65206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.45	1	23.45	22.95	23.95	0								0	0	0	0.14804	1	6439	6439		14.218	6.2728	1				13661	12798	9928	10004	13304	13304					0.006863815867973244
EVQHQYKEKQ	10	Unmodified	_EVQHQYKEKQ_					0	0	0		ENST00000502875.1_1_4:141563950-141565549:-|nuORF	ENST00000502875.1_1_4:141563950-141565549:-|nuORF	ENST00000502875.1_1_4:141563950-141565549:-|nuORF	MSMS	A375_MHC_IP_R2	2	439.6139221191406	3	439.557964	1315.65206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.307	1	21.927	21.427	22.427	0.61932								0	0	0	0.14804	1	6697	6697		14.218	0	1				13662	12798	9928	10004	13305	13305					0.006863815867973244
EVQLEDDW	8	Unmodified	_EVQLEDDW_					0	0	0		ZNF277|p.R282W|1|0.22|ENSG00000198839|chr7:112336146-112336146|C/T|missense_variant	ZNF277|p.R282W|1|0.22|ENSG00000198839|chr7:112336146-112336146|C/T|missense_variant	ZNF277|p.R282W|1|0.22|ENSG00000198839|chr7:112336146-112336146|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	517.6658935546875	2	517.227279	1032.44001	-0.46878	-0.00024247	1.0269	0.00053112	0.55808	0.00028866	517.2278412186791	33.673	0.50425	33.673	33.547	34.052	0					13	9	2	0	0	0	0.77624	1	11158	11158		8.5933	0	1	2694800			13663	30207	9929	10005	13306	13306					-0.07491709823989368
EVQLRITI	8	Unmodified	_EVQLRITI_					0	0	0		ENSG00000053770|ENST00000261558|AP5M1	ENSG00000053770|ENST00000261558|AP5M1	ENSG00000053770|ENST00000261558|AP5M1	MULTI-SECPEP	A375_MHC_IP_R1	1	486.6973876953125	2	486.297842	970.581131	-0.24741	-0.00012032	-0.30115	-0.00014645	-0.54856	-0.00026676	486.2977412203805	73.346	1.065	73.346	72.98	74.045	0					47	20	3	0	0	0	0.4193	1	26682	26682		68.081	9.4019	1	5213700			13664	1251	9930	10006	13307	13307					0.09466333339935318
EVQNSRYI	8	Unmodified	_EVQNSRYI_					0	0	0			REV__ENSG00000167554|ENST00000403906|ZNF610	REV__ENSG00000167554|ENST00000403906|ZNF610	MULTI-SECPEP	A375_MHC_IP_R2	2	505.1589050292969	2	504.759081	1007.50361	-0.85097	-0.00042954	0.52275	0.00026386	-0.32823	-0.00016567	504.75929515848594	36.281	0.40791	37.051	36.85	37.258	0.7709					10	7	2	0	0	0	0.8824	1	13245	13245		23.148	16.425	1	2192000	+		13665	20772	9931	10007	13308	13308					0.00015695403772042482
EVQQFRSV	8	Unmodified	_EVQQFRSV_					0	0	0			REV__SEMA4F|p.K169Nfs*13|1|0.05|ENSG00000135622|chr2:74662775-74662775|G/-|frameshift_variant	REV__SEMA4F|p.K169Nfs*13|1|0.05|ENSG00000135622|chr2:74662775-74662775|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	497.1980895996094	2	496.761623	991.508694	-0.26144	-0.00012987	-0.70876	-0.00035208	-0.9702	-0.00048196	496.76143137774557	56.351	0.55743	56.351	55.991	56.548	0					16	10	2	0	0	0	0.91495	1	20071	20071		12.532	0.89125	1	948410	+		13666	18869	9932	10008	13309	13309					0.012599992663922421
EVQQGVESL	9	Unmodified	_EVQQGVESL_					0	0	0			REV__ENSG00000132837|ENST00000255189|DMGDH	REV__ENSG00000132837|ENST00000255189|DMGDH	MULTI-MSMS	A375_MHC_IP_R2	2	494.6803894042969	2	494.750921	987.48729	-0.64555	-0.00031939	-0.073385	-3.6307E-05	-0.71893	-0.00035569	494.750887176119	65.602	0.55898	66.341	66.018	66.577	0.73811					21	10	3	0	0	0	0.32899	1	24938	24938		28.487	0	1	2272300	+		13667	18686	9933	10009	13310	13310					-0.006954305529802696
EVQQHIIILD	10	Unmodified	_EVQQHIIILD_					0	0	0			REV__nc|ENSG00000231213|A0PG75-2|PLSCR5	REV__nc|ENSG00000231213|A0PG75-2|PLSCR5	MULTI-MSMS	A375_MHC_IP_R1	1	604.6342163085938	2	604.337695	1206.66084	-0.67488	-0.00040785	0.36955	0.00022333	-0.30533	-0.00018452	604.3380102158179	67.424	1.1219	67.424	66.632	67.754	0					42	21	3	0	0	0	0.6806	1	24333	24333		12.175	0	1	18533000	+		13668	22742	9934	10010	13311	13311					0.06577355223294035
EVQRFEYSRP	10	Unmodified	_EVQRFEYSRP_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	MULTI-SECPEP	A375_MHC_IP_R2	2	438.153076171875	3	437.554443	1309.6415	-0.39787	-0.00017409	1.6559	0.00072456	1.2581	0.00055047	437.5556207213503	28.002	0.35586	28.681	28.502	28.858	0.67857					9	6	2	0	0	0	0.93041	1	9647	9647		7.9454	0	1	1031100			13669	5861	9935	10011	13312	13312					-0.000936010676468868
EVQSKKYKYEV	11	Unmodified	_EVQSKKYKYEV_					0	0	0		CFAP58|p.E807K|1|0.3|ENSG00000120051|chr10:104450113-104450113|G/A|missense_variant	CFAP58|p.E807K|1|0.3|ENSG00000120051|chr10:104450113-104450113|G/A|missense_variant	CFAP58|p.E807K|1|0.3|ENSG00000120051|chr10:104450113-104450113|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	467.985107421875	3	467.58552	1399.73473	-0.66585	-0.00031134	-0.1793	-8.3839E-05	-0.84515	-0.00039518	467.5854242063823	48.544	0.60905	49.301	49.03	49.639	0.75737					28	11	3	0	0	0	0.7328	1	18245	18245		6.2344	0.71106	1	2400400			13670	372	9936	10012	13313	13313					0.05085278594924603
EVQSSLRIMNA	11	Unmodified	_EVQSSLRIMNA_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.R7429Ifs*19|1|0.07|ENSG00000131018|chr6:152214911-152214966|TCTTTCTGTAGTCTGAGAGGAGATCAGAGACCAATGGCGGTTCAGATTCTGCATTC/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MSMS	A375_MHC_IP_R1	1	416.4306335449219	3	416.551933	1246.63397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.412	1	41.412	40.912	41.912	0								0	0	0	0.16138	1	14293	14293		6.2344	0.36622	1				13671	4300	9937	10013	13314	13314					0.020519233404456827
EVRCSGQELSR	11	Unmodified	_EVRCSGQELSR_					0	0	0		nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123170580-123298708:-|nuORF	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	MULTI-MSMS	A375_MHC_IP_R2	2	422.1400451660156	3	421.875188	1262.60373	-0.35949	-0.00015166	0.58895	0.00024847	0.22946	9.6804E-05	421.8753668811284	41.247	0.25372	42.022	41.794	42.047	0.77451					6	4	2	0	0	0	0.7328	1	15234	15234		6.2344	0.45093	1	2342700			13672	4830	9938	10014	13315	13315					-0.01706435324740596
EVRELTTRWHK	11	Unmodified	_EVRELTTRWHK_					0	0	0			REV__ENST00000565534.5_1_15:75660179-75660924:-|nuORF	REV__ENST00000565534.5_1_15:75660179-75660924:-|nuORF	MSMS	A375_MHC_IP_R1	1	728.2996215820312	2	727.896774	1453.779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.73	1	131.73	131.23	132.23	0								0	0	0	0.16275	1	50788	50788		8.7454	6.4626	1		+		13673	19211	9939	10015	13316	13316					0.07025727531754455
EVREMTSNY	9	Unmodified	_EVREMTSNY_					0	0	0			REV__ENSG00000165730|ENST00000298596|STOX1	REV__ENSG00000165730|ENST00000298596|STOX1	MSMS	A375_MHC_IP_R1	1	564.6673583984375	2	564.753138	1127.49172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.173	1	71.173	70.673	71.673	0								0	0	0	0.15486	1	25854	25854		11.64	0	1		+		13674	20618	9940	10016	13317	13317					-0.06692289401735252
EVRESIRF	8	Unmodified	_EVRESIRF_					0	0	0		nc|ENSG00000036530|Q9Y6A2-3|CYP46A1;nc|ENSG00000036530|Q9Y6A2-2|CYP46A1;ENSG00000036530|ENST00000261835|CYP46A1	nc|ENSG00000036530|Q9Y6A2-3|CYP46A1	nc|ENSG00000036530|Q9Y6A2-3|CYP46A1	MULTI-SECPEP	A375_MHC_IP_R2	2	518.2155151367188	2	518.282723	1034.55089	-0.70796	-0.00036693	-2.2795	-0.0011814	-2.9875	-0.0015484	518.2814131147373	41.959	1.019	42.734	41.997	43.016	0.77451					25	19	2	0	0	0	0.9187	1	15631	15631		13.906	3.0821	1	4363400			13675	1138	9941	10017	13318	13318					0.03499974674764417
EVRFGSFSV	9	Unmodified	_EVRFGSFSV_					0	0	0			REV__TMEM2|p.L405F|1|0.53|ENSG00000135048|chr9:71734986-71734986|G/A|missense_variant	REV__TMEM2|p.L405F|1|0.53|ENSG00000135048|chr9:71734986-71734986|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	514.6642456054688	2	514.263999	1026.51345	-0.27951	-0.00014374	1.0569	0.00054351	0.77736	0.00039977	514.2645129714782	92.557	0.4568	92.557	92.261	92.718	0					13	8	2	0	0	0	0.41434	1	34021	34021		39.95	13.066	1	2516800	+		13676	28132	9942	10018	13319	13319					0.001248834091484241
EVRFGSFSV	9	Unmodified	_EVRFGSFSV_					0	0	0			REV__TMEM2|p.L405F|1|0.53|ENSG00000135048|chr9:71734986-71734986|G/A|missense_variant	REV__TMEM2|p.L405F|1|0.53|ENSG00000135048|chr9:71734986-71734986|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	514.6644287109375	2	514.263999	1026.51345	-0.67128	-0.00034521	0.90622	0.00046604	0.23494	0.00012082	514.2643970684579	91.792	0.55777	92.526	92.222	92.78	0.73451					16	10	2	0	0	0	0.27064	1	34899	34899		32.786	2.1491	1	1964700	+		13677	28132	9942	10018	13320	13320					0.001248834091484241
EVRFGSFSV	9	Unmodified	_EVRFGSFSV_					0	0	0			REV__TMEM2|p.L405F|1|0.53|ENSG00000135048|chr9:71734986-71734986|G/A|missense_variant	REV__TMEM2|p.L405F|1|0.53|ENSG00000135048|chr9:71734986-71734986|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	514.6644287109375	2	514.263999	1026.51345	-0.67128	-0.00034521	0.90622	0.00046604	0.23494	0.00012082	514.2643970684579	91.792	0.55777	92.526	92.222	92.78	0.73451					16	10	2	0	0	0	0.41434	1	34899	34899		32.786	2.1491	1	1964700	+		13678	28132	9942	10018	13321	13321					0.001248834091484241
EVRFSQEYF	9	Unmodified	_EVRFSQEYF_					0	0	0			REV__HABP2|p.H386Y|1|0.48|ENSG00000148702|chr10:113583277-113583277|C/T|missense_variant	REV__HABP2|p.H386Y|1|0.48|ENSG00000148702|chr10:113583277-113583277|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	602.1961669921875	2	602.785296	1203.55604	-0.72173	-0.00043505	-0.72644	-0.00043789	-1.4482	-0.00087293	602.7852650196005	67.648	0.40568	67.648	67.399	67.804	0					12	7	2	0	0	0	0.62767	1	24491	24491		16.942	3.8998	1	535010	+		13679	26723	9943	10019	13322	13322					-0.0375976625327894
EVRIFAVN	8	Unmodified	_EVRIFAVN_					0	0	0		nc|ENSG00000196091|Q00872-5|MYBPC1;nc|ENSG00000196091|Q00872-3|MYBPC1;nc|ENSG00000196091|Q00872-9|MYBPC1;nc|ENSG00000196091|Q00872-8|MYBPC1;nc|ENSG00000196091|Q00872-7|MYBPC1;nc|ENSG00000196091|Q00872|MYBPC1;nc|ENSG00000196091|Q00872-10|MYBPC1;nc|ENSG00000196091|Q00872-2|MYBPC1;ENSG00000196091|ENST00000361466|MYBPC1;nc|ENSG00000196091|Q00872-6|MYBPC1	nc|ENSG00000196091|Q00872-5|MYBPC1	nc|ENSG00000196091|Q00872-5|MYBPC1	MULTI-SECPEP	A375_MHC_IP_R1	1	473.665771484375	2	474.269084	946.523616	-0.64761	-0.00030714	0.64545	0.00030612	-0.0021614	-1.0251E-06	474.2692906041426	66.097	0.76137	66.097	65.616	66.377	0					18	14	2	0	0	0	0.972	1	24020	24020		8.5933	0	1	1581200			13680	8992	9944	10020	13323	13323					0.048214911343848144
EVRIGVLRHLY	11	Unmodified	_EVRIGVLRHLY_					0	0	0		ENST00000493688.5_1_20:56813265-56820980:-|nuORF;ENST00000497138.5_1_20:56807969-56820980:-|nuORF	ENST00000493688.5_1_20:56813265-56820980:-|nuORF	ENST00000493688.5_1_20:56813265-56820980:-|nuORF	MSMS	A375_MHC_IP_R1	1	678.3837280273438	2	677.901328	1353.7881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.263	1	94.263	93.763	94.763	0								0	0	0	0.16258	1	34648	34648		5.2969	0.39987	1				13681	12683	9945	10021	13324	13324					0.12536120888171354
EVRKKQAMF	9	Unmodified	_EVRKKQAMF_					0	0	0			REV__HLTF|p.S884F|1|0.44|ENSG00000071794|chr3:149039194-149039194|G/A|missense_variant	REV__HLTF|p.S884F|1|0.44|ENSG00000071794|chr3:149039194-149039194|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	379.9364318847656	3	379.546343	1135.6172	0.29677	0.00011264	0.30005	0.00011388	0.59681	0.00022652	379.5462243279085	52.361	0.81067	52.361	52.136	52.946	0					20	15	2	0	0	0	0.41409	1	18827	18827		17.443	1.704	1	1945700	+		13682	26748	9946	10022	13325	13325					0.054814672451584556
EVRLLFSPC	9	Unmodified	_EVRLLFSPC_					0	0	0		ENST00000462725.6_3_3:167443222-167452282:-|nuORF;ENST00000461494.5_2_3:167437995-167452264:-|nuORF;ENST00000483451.5_1_3:167452060-167452282:-|nuORF	ENST00000462725.6_3_3:167443222-167452282:-|nuORF	ENST00000462725.6_3_3:167443222-167452282:-|nuORF	MSMS	A375_MHC_IP_R1	1	532.21875	2	532.283877	1062.5532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.746	1	70.746	70.246	71.246	0								0	0	0	0.15468	1	25690	25690		13.906	1.3745	1				13683	12186	9947	10023	13326	13326					0.024426870882280127
EVRLRDETVLP	11	Unmodified	_EVRLRDETVLP_					0	0	0		ENST00000523568.1_7:102228019-102246337:-|nuORF;nc|ENSG00000105808|O43374-2|RASA4;ENSG00000170667|ENST00000465829|RASA4B;ENSG00000105808|ENST00000262940|RASA4;ENST00000427076.5_1_7:43992756-44009363:-|nuORF	ENST00000523568.1_7:102228019-102246337:-|nuORF	ENST00000523568.1_7:102228019-102246337:-|nuORF	MSMS	A375_MHC_IP_R1	1	663.7801513671875	2	663.872434	1325.73031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.55	1	112.55	112.05	113.05	0								0	0	0	0.16258	1	41251	41251		5.2969	0.76802	1				13684	13044	9948	10024	13327	13327					0.08047814172027756
EVRRFPIW	8	Unmodified	_EVRRFPIW_					0	0	0			REV__ENSG00000158006|ENST00000374282|PAFAH2	REV__ENSG00000158006|ENST00000374282|PAFAH2	MULTI-SECPEP	A375_MHC_IP_R2	2	367.93182373046875	3	368.210059	1101.60835	0.28827	0.00010614	0.76503	0.00028169	1.0533	0.00038783	368.54482404236455	42.698	0.91528	43.471	42.91	43.826	0.7724					33	17	3	0	0	0	0.972	1	15956	15956		0.40072	0.050084	1	1836700	+		13685	20056	9949	10025	13328	13328					0.06160861670991835
EVRRFPIW	8	Unmodified	_EVRRFPIW_					0	0	0			REV__ENSG00000158006|ENST00000374282|PAFAH2	REV__ENSG00000158006|ENST00000374282|PAFAH2	MULTI-MATCH	A375_MHC_IP_R1	1		3	368.210059	1101.60835	0.50682	0.00018662	1.2573	0.00046294	1.7641	0.00064955	368.54529865918397	43.12	0.20366	43.12	42.942	43.146	0	-0.17512	0.00051246	NaN	0.40072	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	591160	+		13686	20056	9949	10025							0.06160861670991835
EVRRKLLIKRL	11	Unmodified	_EVRRKLLIKRL_					0	0	0		ENSG00000119812|ENST00000238823|FAM98A	ENSG00000119812|ENST00000238823|FAM98A	ENSG00000119812|ENST00000238823|FAM98A	MSMS	A375_MHC_IP_R2	2	712.4853515625	2	712.48282	1422.95109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.506	1	88.238	87.738	88.738	0.7318								0	0	0	0.16353	1	33281	33281		0.35063	0.35063	1				13687	3625	9950	10026	13329	13329					0.2565292400997805
EVRRPGYL	8	Unmodified	_EVRRPGYL_					0	0	0			REV__ENST00000578942.5_1_18:210315-211281:+|nuORF	REV__ENST00000578942.5_1_18:210315-211281:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	495.6795654296875	2	495.279983	988.545414	-0.32496	-0.00016095	-0.17059	-8.4488E-05	-0.49555	-0.00024544	495.27976719641197	33.788	0.60692	33.788	33.445	34.052	0					20	11	2	0	0	0	0.97021	1	11120	11120		15.847	2.3393	1	2178300	+		13688	17176	9951	10027	13330	13330					0.050682958829384006
EVRTFRKR	8	Unmodified	_EVRTFRKR_					0	0	0			REV__nc|ENSG00000008294|O60271-9|SPAG9	REV__nc|ENSG00000008294|O60271-9|SPAG9	MULTI-MSMS	A375_MHC_IP_R2	2	1092.7845458984375	1	1091.64324	1090.63596	0.10633	0.00011608	-3.8779	-0.0042332	-3.7715	-0.0041172	1091.6404728567027	126.94	0.40533	127.2	126.9	127.31	0.26592					10	7	2	0	0	0	0.7773	1	49672	49672		4.756	0.42677	1	10687000	+		13689	16170	9952	10028	13331	13331					0.09426764931231446
EVRVVQLI	8	Unmodified	_EVRVVQLI_					0	0	0			REV__OR51I2|p.A48V|1|0.37|ENSG00000187918|chr11:5453631-5453631|C/T|missense_variant	REV__OR51I2|p.A48V|1|0.37|ENSG00000187918|chr11:5453631-5453631|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	478.7003173828125	2	478.300384	954.586216	-0.43197	-0.00020661	0.47968	0.00022943	0.047716	2.2822E-05	478.3005719708276	103.34	2.0842	103.34	102.81	104.89	0					89	40	4	0	0	0	0.66714	1	37885	37885		42.095	1.646	1	30619000	+		13690	27679	9953	10029	13332	13332					0.10710637202578255
EVRVVYLAP	9	Unmodified	_EVRVVYLAP_					0	0	0			REV__ENSG00000130338|ENST00000367097|TULP4	REV__ENSG00000130338|ENST00000367097|TULP4	MULTI-MSMS	A375_MHC_IP_R1	1	524.3755493164062	2	523.305667	1044.59678	-0.42644	-0.00022316	0.069183	3.6204E-05	-0.35726	-0.00018696	523.305637047914	88.231	1.8331	88.231	87.542	89.375	0					63	35	3	0	0	0	0.64808	1	32659	32659		11.64	3.047	1	73473000	+		13691	18533	9954	10030	13333	13333					0.07626619856978323
EVSCHDQGL	9	Unmodified	_EVSCHDQGL_					0	0	0		nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-2|DDX1;DDX1|p.N389Rfs*14|1|0.04|ENSG00000079785|chr2:15618228-15618231|CAAT/-|frameshift_variant	nc|ENSG00000079785|Q92499-3|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	MSMS	A375_MHC_IP_R1	1	494.1974792480469	2	494.213649	986.412745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.563	1	66.563	66.063	67.063	0								0	0	0	0.14905	1	24106	24106		23.148	9.6405	1				13692	1702	9955	10031	13334	13334					-0.08100516636022803
EVSCHDQGL	9	Unmodified	_EVSCHDQGL_					0	0	0		nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-2|DDX1;DDX1|p.N389Rfs*14|1|0.04|ENSG00000079785|chr2:15618228-15618231|CAAT/-|frameshift_variant	nc|ENSG00000079785|Q92499-3|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	MSMS	A375_MHC_IP_R2	2	494.197509765625	2	494.213649	986.412745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.539	1	66.277	65.777	66.777	0.73811								0	0	0	0.15283	1	24847	24847		16.942	1.0951	1				13693	1702	9955	10031	13335	13335					-0.08100516636022803
EVSGSSHCPL	10	Unmodified	_EVSGSSHCPL_					0	0	0		ENSG00000276231|ENST00000619866|PIK3R6	ENSG00000276231|ENST00000619866|PIK3R6	ENSG00000276231|ENST00000619866|PIK3R6	MULTI-MSMS	A375_MHC_IP_R2	2	508.1573486328125	2	508.229299	1014.44404	-0.81739	-0.00041542	-0.42967	-0.00021837	-1.2471	-0.00063379	508.2290430154764	27.935	0.30506	28.614	28.452	28.757	0.67857					8	5	2	0	0	0	0.6806	1	9555	9555		14.838	0	1	1507400			13694	10019	9956	10032	13336	13336					-0.06259943601924078
EVSGVEYNY	9	Unmodified	_EVSGVEYNY_					0	0	0			REV__nc|ENSG00000143379|Q15047-3|SETDB1	REV__nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-MSMS	A375_MHC_IP_R1	1	530.1951904296875	2	530.235104	1058.45566	-0.59712	-0.00031661	0.23199	0.00012301	-0.36513	-0.00019361	530.2351802859818	59.239	0.76242	59.239	58.736	59.498	0					21	14	2	0	0	0	0.32899	1	21380	21380		28.487	11.545	1	1334600	+		13695	19352	9957	10033	13337	13337					-0.0712342330696174
EVSIHQAHPS	10	Unmodified	_EVSIHQAHPS_					0	0	0			REV__nc|ENSG00000020181|Q96PE1-2|ADGRA2	REV__nc|ENSG00000020181|Q96PE1-2|ADGRA2	MULTI-SECPEP	A375_MHC_IP_R2	2	552.2069091796875	2	552.775262	1103.53597	-1.0704	-0.0005917	2.678	0.0014803	1.6076	0.00088863	553.2801216645996	23.475	0.40439	24.105	23.878	24.283	0.63014					9	7	2	0	0	0	0.81532	1	7635	7635		19.362	2.249	1	1763700	+		13696	27093	9958	10034	13338	13338					-0.011655171932488884
EVSKGDTME	9	Unmodified	_EVSKGDTME_					0	0	0		nc|ENSG00000158528|Q9ULJ8|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	MULTI-MSMS	A375_MHC_IP_R2	2	498.652099609375	2	498.221139	994.427726	-0.83532	-0.00041617	0.25646	0.00012777	-0.57886	-0.0002884	498.2208226484763	58.463	0.25457	59.212	59.083	59.338	0.74894					5	4	2	0	0	0	0.58047	1	22084	22084		15.847	4.2069	1	741100			13697	6310	9959	10035	13339	13339					-0.06971069558665022
EVSLKRGYY	9	Unmodified	_EVSLKRGYY_					0	0	0			REV__ENSG00000161896|ENST00000293756|IP6K3	REV__ENSG00000161896|ENST00000293756|IP6K3	MULTI-SECPEP	A375_MHC_IP_R2	2	557.0159301757812	2	557.798206	1113.58186	-1.0118	-0.00056439	-0.3779	-0.00021079	-1.3897	-0.00077519	557.79796122556	56.203	0.4073	56.953	56.745	57.152	0.75015					12	7	2	0	0	0	0.75519	1	21288	21288		14.838	8.6325	1	1479400	+		13698	20221	9960	10036	13340	13340					0.029611279890104925
EVSLRDRCQ	9	Unmodified	_EVSLRDRCQ_					0	0	0			REV__RASGRP2|p.K541R|1|0.31|ENSG00000068831|chr11:64729012-64729012|T/C|missense_variant	REV__RASGRP2|p.K541R|1|0.31|ENSG00000068831|chr11:64729012-64729012|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	369.9363098144531	3	369.185474	1104.53459	0.65985	0.00024361	1.8051	0.00066641	2.4649	0.00091002	369.1856564514213	38.819	0.50807	38.819	38.628	39.136	0					21	9	4	0	0	0	0.76187	1	13302	13302		7.609	0	1	3727800	+		13699	27869	9961	10037	13341	13341					-0.013494745536718256
EVSPAYTQFLE	11	Unmodified	_EVSPAYTQFLE_					0	0	0		ENSG00000244607|ENST00000310232|CCDC13	ENSG00000244607|ENST00000310232|CCDC13	ENSG00000244607|ENST00000310232|CCDC13	MULTI-MSMS	A375_MHC_IP_R1	1	642.7113647460938	2	642.311343	1282.60813	-0.52872	-0.0003396	0.31337	0.00020128	-0.21535	-0.00013832	642.311550386492	91.804	0.55519	91.804	91.452	92.007	0					27	10	3	0	0	0	0.33856	1	33714	33714		43.772	13.932	1	3201000			13700	9823	9962	10038	13342	13342					-0.021866476301738658
EVSPFTIEMS	10	Unmodified	_EVSPFTIEMS_					0	0	0		ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-SECPEP	A375_MHC_IP_R1	1	570.6532592773438	2	570.26809	1138.52163	-0.38972	-0.00022225	3.3668	0.00192	2.9771	0.0016977	570.2701777523265	76.839	0.40727	76.839	76.471	76.878	0					13	7	3	0	0	0	0.52461	1	27992	27992		17.113	0	1	1609500			13701	1799	9963	10039	13343	13343					-0.042093504564036266
EVSPLATFLF	10	Unmodified	_EVSPLATFLF_					0	0	0		DNAH5|p.S737F|1|0.58|ENSG00000039139|chr5:13900255-13900255|G/A|missense_variant	DNAH5|p.S737F|1|0.58|ENSG00000039139|chr5:13900255-13900255|G/A|missense_variant	DNAH5|p.S737F|1|0.58|ENSG00000039139|chr5:13900255-13900255|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	562.6683959960938	2	562.305332	1122.59611	-0.3786	-0.00021289	1.7771	0.00099929	1.3985	0.0007864	562.8083789659311	111.55	0.41173	112.28	112.05	112.46	0.72458					9	7	2	0	0	0	0.8125	1	42041	42041		13.042	0	1	748400			13702	771	9964	10040	13344	13344					0.039717804172596516
EVSRREDV	8	Unmodified	_EVSRREDV_					0	0	0		ENSG00000048342|ENST00000424120|CC2D2A;nc|ENSG00000048342|Q9P2K1-2|CC2D2A;ENST00000513811.5_1_4:15471657-15545375:+|nuORF	ENSG00000048342|ENST00000424120|CC2D2A	ENSG00000048342|ENST00000424120|CC2D2A	MULTI-SECPEP	A375_MHC_IP_R2	2	494.6656494140625	2	495.254163	988.493772	-0.28012	-0.00013873	0.83883	0.00041544	0.55871	0.0002767	495.2538568554056	43.823	0.65562	44.592	44.38	45.035	0.76909					25	12	3	0	0	0	0.86765	1	16399	16399		12.532	0	1	1281300			13703	1211	9965	10041	13345	13345					-0.0009349260161570783
EVSSFIQLG	9	Unmodified	_EVSSFIQLG_					0	0	0			REV__nc|ENSG00000114648|O94889-2|KLHL18	REV__nc|ENSG00000114648|O94889-2|KLHL18	MULTI-MSMS	A375_MHC_IP_R2	2	491.1610412597656	2	490.258382	978.502212	-0.58587	-0.00028723	0.64225	0.00031487	0.056381	2.7641E-05	490.2583978667637	45.501	1.0101	46.266	45.694	46.704	0.76518					44	19	3	0	0	0	0.64808	1	16878	16878		11.64	0.81637	1	6558100	+		13704	17834	9966	10042	13346	13346					0.012100613150209938
EVSTPSSLY	9	Unmodified	_EVSTPSSLY_					0	0	0		nc|ENSG00000145016|Q92622-3|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN;ENSG00000145016|ENST00000296343|RUBCN	nc|ENSG00000145016|Q92622-3|RUBCN	nc|ENSG00000145016|Q92622-3|RUBCN	MULTI-SECPEP	A375_MHC_IP_R1	1	491.65350341796875	2	491.740022	981.465492	-0.4353	-0.00021405	2.8928	0.0014225	2.4575	0.0012084	491.7411956019068	31.237	0.30334	31.237	30.959	31.262	0					6	5	2	0	0	0	0.55359	1	9909	9909		28.487	6.7402	1	1000600			13705	5533	9967	10043	13347	13347					-0.02598235301547902
EVSVFAPLLC	10	Unmodified	_EVSVFAPLLC_					0	0	0			REV__ENST00000209875.8_1_12:54632788-54632935:-|nuORF	REV__ENST00000209875.8_1_12:54632788-54632935:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	540.2108154296875	2	539.286085	1076.55762	-0.80538	-0.00043433	-1.5475	-0.00083456	-2.3529	-0.0012689	539.2853004103666	65.887	0.65884	65.887	65.565	66.224	0					22	12	3	0	0	0	0.69306	1	23894	23894		13.906	1.3745	1	1600200	+		13706	23026	9968	10044	13348	13348					0.022401515111369008
EVTDDMLYY	9	Unmodified	_EVTDDMLYY_					0	0	0			REV__nc|ENSG00000096093|Q5JVL4-3|EFHC1	REV__nc|ENSG00000096093|Q5JVL4-3|EFHC1	MSMS	A375_MHC_IP_R2	2	574.7631225585938	2	574.744447	1147.47434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.59	1	29.289	28.789	29.789	0.69872								0	0	0	0.14905	1	9891	9891		23.148	6.2061	1		+		13707	17006	9969	10045	13349	13349					-0.09349629727398678
EVTEEIFEN	9	Unmodified	_EVTEEIFEN_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MSMS	A375_MHC_IP_R1	1	555.1796264648438	2	555.253494	1108.49243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.889	1	48.889	48.389	49.389	0								0	0	0	0.15486	1	17269	17269		10.824	1.4408	1				13708	8698	9970	10046	13350	13350					-0.057471714810162666
EVTEFYVQNEN	11	Unmodified	_EVTEFYVQNEN_					0	0	0		ENST00000469042.5_1_3:132298334-132378619:-|nuORF;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11;nc|ENSG00000240303|Q709F0-3|ACAD11	ENST00000469042.5_1_3:132298334-132378619:-|nuORF	ENST00000469042.5_1_3:132298334-132378619:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	686.7064208984375	2	686.306789	1370.59903	-0.63157	-0.00043345	0.6079	0.00041721	-0.023668	-1.6243E-05	686.3071762132594	43.939	0.45839	43.939	43.706	44.165	0					16	8	2	0	0	0	0.72583	1	15357	15357		12.873	1.3779	1	2758300			13709	9772	9971	10047	13351	13351					-0.07145040986529239
EVTEFYVQNEN	11	Unmodified	_EVTEFYVQNEN_					0	0	0		ENST00000469042.5_1_3:132298334-132378619:-|nuORF;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11;nc|ENSG00000240303|Q709F0-3|ACAD11	ENST00000469042.5_1_3:132298334-132378619:-|nuORF	ENST00000469042.5_1_3:132298334-132378619:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	686.706298828125	2	686.306789	1370.59903	-0.52722	-0.00036184	-0.2205	-0.00015133	-0.74772	-0.00051317	686.3068255420969	43.294	0.45596	44.066	43.826	44.282	0.7724					17	8	3	0	0	0	0.71476	1	16141	16141		14.405	3.6059	1	2305200			13710	9772	9971	10047	13352	13352					-0.07145040986529239
EVTEFYVQNEN	11	Unmodified	_EVTEFYVQNEN_					0	0	0		ENST00000469042.5_1_3:132298334-132378619:-|nuORF;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11;nc|ENSG00000240303|Q709F0-3|ACAD11	ENST00000469042.5_1_3:132298334-132378619:-|nuORF	ENST00000469042.5_1_3:132298334-132378619:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	686.306789	1370.59903	-0.63157	-0.00043345	0.6079	0.00041721	-0.023668	-1.6243E-05	686.3071762132594	43.939	0.45839	43.939	43.706	44.165	0	-0.063756	0.00054646	NaN	14.405	16	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2758300			13711	9772	9971	10047							-0.07145040986529239
EVTKKDTII	9	Unmodified	_EVTKKDTII_					0	0	0			REV__tr|U7SK84|U7SK84_FUSNUTrksystempotassiumuptakeproteinTrkAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02136PE=4SV=1	REV__tr|U7SK84|U7SK84_FUSNUTrksystempotassiumuptakeproteinTrkAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02136PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1310424804688	2	523.808239	1045.60193	-1.366	-0.00071553	-0.38303	-0.00020063	-1.749	-0.00091616	523.8079587773926	29.375	0.35542	30.074	29.88	30.236	0.69872					10	6	2	0	0	0	0.74412	1	10266	10266		3.2813	0	1	5390100	+		13712	28246	9972	10048	13353	13353					0.0809487892895504
EVTLLHVDW	9	Unmodified	_EVTLLHVDW_					0	0	0		ENSG00000173714|ENST00000311378|WFIKKN2	ENSG00000173714|ENST00000311378|WFIKKN2	ENSG00000173714|ENST00000311378|WFIKKN2	MULTI-MSMS	A375_MHC_IP_R1	1	556.7049560546875	2	556.292756	1110.57096	-0.37576	-0.00020903	2.8851	0.001605	2.5093	0.0013959	556.2939234108431	110.06	1.3235	110.06	109.32	110.65	0					31	25	2	0	0	0	0.4867	1	40418	40418		20.454	3.5113	1	2389900			13713	7824	9973	10049	13354	13354					0.02009725614720992
EVTLREVPA	9	Unmodified	_EVTLREVPA_					0	0	0		ENSG00000213401|ENST00000393869|MAGEA12;chrX:152733859-152736087|323|82.7|0.12|9.43|+|ENST00000357916|MAGEA12,MAGEA12	ENSG00000213401|ENST00000393869|MAGEA12	ENSG00000213401|ENST00000393869|MAGEA12	MULTI-SECPEP	A375_MHC_IP_R1	1	506.6953125	2	507.284931	1012.55531	-0.2661	-0.00013499	-1.0693	-0.00054242	-1.3354	-0.00067741	507.284913804686	37.513	0.81626	37.513	36.996	37.812	0					27	15	2	0	0	0	0.4261	1	12444	12444		37.974	9.4872	1	1858900			13714	523	9974	10050	13355	13355					0.04953439097664614
EVTLREVPA	9	Unmodified	_EVTLREVPA_					0	0	0		ENSG00000213401|ENST00000393869|MAGEA12;chrX:152733859-152736087|323|82.7|0.12|9.43|+|ENST00000357916|MAGEA12,MAGEA12	ENSG00000213401|ENST00000393869|MAGEA12	ENSG00000213401|ENST00000393869|MAGEA12	MULTI-SECPEP	A375_MHC_IP_R2	2	506.9906311035156	2	507.284931	1012.55531	-1.1861	-0.00060171	-1.006	-0.00051033	-2.1921	-0.001112	507.2850315911912	36.716	0.91233	37.487	37.005	37.917	0.7709					27	17	2	0	0	0	0.53748	1	13247	13247		30.637	5.2372	1	2431500			13715	523	9974	10050	13356	13356					0.04953439097664614
EVTLTYTSAKK	11	Unmodified	_EVTLTYTSAKK_					0	0	0			REV__MUC16|p.E143K|1|0.36|ENSG00000181143|chr19:8980712-8980712|C/T|missense_variant	REV__MUC16|p.E143K|1|0.36|ENSG00000181143|chr19:8980712-8980712|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	414.63067626953125	3	414.230966	1239.67107	-0.43116	-0.0001786	-0.10243	-4.2428E-05	-0.53359	-0.00022103	414.23088738153245	25.214	0.56	25.858	25.668	26.229	0.64368					24	10	3	0	0	0	0.72577	1	8429	8429		12.929	0.70111	1	4950100	+		13716	27047	9975	10051	13357	13357					0.06081918157860855
EVTNLPSTGDS	11	Unmodified	_EVTNLPSTGDS_					0	0	0			REV__nc|ENSG00000076321|Q9Y2M5-2|KLHL20	REV__nc|ENSG00000076321|Q9Y2M5-2|KLHL20	MSMS	A375_MHC_IP_R2	2	560.1949462890625	2	560.26185	1118.50915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.225	1	59.972	59.472	60.472	0.74714								0	0	0	0.14085	1	22415	22415		26.268	11.43	1		+		13717	16672	9976	10052	13358	13358					-0.045366705950755204
EVTNLPSTGDS	11	Unmodified	_EVTNLPSTGDS_					0	0	0			REV__nc|ENSG00000076321|Q9Y2M5-2|KLHL20	REV__nc|ENSG00000076321|Q9Y2M5-2|KLHL20	MSMS	A375_MHC_IP_R2	2	560.1827392578125	2	560.26185	1118.50915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.353	1	60.1	59.6	60.6	0.74714								0	0	0	0.11439	1	22462	22462		32.786	14.639	1		+		13718	16672	9976	10052	13359	13359					-0.045366705950755204
EVTRRLPD	8	Unmodified	_EVTRRLPD_					0	0	0			REV__ENSG00000136928|ENST00000259455|GABBR2	REV__ENSG00000136928|ENST00000259455|GABBR2	MULTI-MSMS	A375_MHC_IP_R2	2	493.6746520996094	2	493.274898	984.535243	-0.35818	-0.00017668	-0.35866	-0.00017692	-0.71684	-0.0003536	493.27472850868196	47.591	1.0122	48.352	48.022	49.034	0.76128					50	19	4	0	0	0	0.70783	1	17808	17808		32.305	4.6767	1	37591000	+		13719	18973	9977	10053	13360	13360					0.04235688157700679
EVTSEVSEF	9	Unmodified	_EVTSEVSEF_					0	0	0			REV__ENSG00000157827|ENST00000288670|FMNL2	REV__ENSG00000157827|ENST00000288670|FMNL2	MULTI-MSMS	A375_MHC_IP_R1	1	514.134765625	2	513.734937	1025.45532	-0.70757	-0.0003635	-0.33327	-0.00017121	-1.0408	-0.00053471	513.7346173229587	85.946	0.76122	85.946	85.513	86.274	0					18	14	2	0	0	0	0.46038	1	31533	31533		21.747	1.293	1	1847600	+		13720	20046	9978	10054	13361	13361					-0.05638843026804352
EVTTDSIGYC	10	Unmodified	_EVTTDSIGYC_					0	0	0			REV__ENSG00000144452|ENST00000272895|ABCA12	REV__ENSG00000144452|ENST00000272895|ABCA12	MULTI-MSMS	A375_MHC_IP_R2	2	544.1950073242188	2	544.234247	1086.45394	-0.682	-0.00037117	-0.23806	-0.00012956	-0.92006	-0.00050073	544.2341908160143	86.74	0.71347	87.473	87.049	87.762	0.733					22	13	2	0	0	0	0.62155	1	32916	32916		19.257	2.3147	1	2922600	+		13721	19424	9979	10055	13362	13362					-0.08582800387193856
EVTTEYTEF	9	Unmodified	_EVTTEYTEF_					0	0	0		tr|U7SNY8|U7SNY8_FUSNUProbabletranscriptionalregulatoryproteinHMPREF1766_01968OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01968PE=3SV=1	tr|U7SNY8|U7SNY8_FUSNUProbabletranscriptionalregulatoryproteinHMPREF1766_01968OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01968PE=3SV=1	tr|U7SNY8|U7SNY8_FUSNUProbabletranscriptionalregulatoryproteinHMPREF1766_01968OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01968PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	559.6461791992188	2	559.748044	1117.48154	-0.43163	-0.00024161	1.405	0.00078643	0.97334	0.00054483	560.2512403442889	91.955	0.2511	91.955	91.756	92.007	0					6	4	2	0	0	0	0.76187	1	33759	33759		7.2892	4.9865	1	1425000			13722	29565	9980	10056	13363	13363					-0.07250573855321818
EVTTLEELL	9	Unmodified	_EVTTLEELL_					0	0	0		nc|ENSG00000143434|Q9H3T2-2|SEMA6C;ENSG00000143434|ENST00000368914|SEMA6C;nc|ENSG00000143434|Q9H3T2-3|SEMA6C	nc|ENSG00000143434|Q9H3T2-2|SEMA6C	nc|ENSG00000143434|Q9H3T2-2|SEMA6C	MULTI-SECPEP	A375_MHC_IP_R2	2	524.1298217773438	2	523.78443	1045.55431	-0.47786	-0.0002503	0.69784	0.00036552	0.21997	0.00011522	524.2875429998979	63.596	0.56036	64.336	63.936	64.496	0.74022					14	9	2	0	0	0	0.55359	1	24053	24053		21.747	0	1	1599100			13723	5389	9981	10057	13364	13364					0.03335179938108013
EVTTLKQEKNP	11	Unmodified	_EVTTLKQEKNP_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MSMS	A375_MHC_IP_R2	2	643.892333984375	2	643.851167	1285.68778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.361	1	86.097	85.597	86.597	0.73601								0	0	0	0.16097	1	32451	32451		13.615	2.1202	1				13724	14680	9982	10058	13365	13365					0.05636419043821661
EVTVCSIISV	10	Unmodified	_EVTVCSIISV_					0	0	0		ENSG00000230549|ENST00000529559|USP17L1	ENSG00000230549|ENST00000529559|USP17L1	ENSG00000230549|ENST00000529559|USP17L1	MULTI-MSMS	A375_MHC_IP_R1	1	525.6806640625	2	525.281	1048.54745	-0.64362	-0.00033808	-0.085482	-4.4902E-05	-0.7291	-0.00038298	525.280857794587	66.249	1.015	66.249	65.514	66.529	0					38	19	3	0	0	0	0.079406	1	23902	23902		68.081	9.4019	1	3759000			13725	9718	9983	10059	13366	13366					0.025115437858630685
EVTVCSIISV	10	Unmodified	_EVTVCSIISV_					0	0	0		ENSG00000230549|ENST00000529559|USP17L1	ENSG00000230549|ENST00000529559|USP17L1	ENSG00000230549|ENST00000529559|USP17L1	MULTI-SECPEP	A375_MHC_IP_R2	2	525.6806030273438	2	525.281	1048.54745	-0.57422	-0.00030163	-0.69227	-0.00036364	-1.2665	-0.00066526	525.2805789600112	65.132	0.9637	65.87	65.511	66.475	0.73811					42	18	3	0	0	0	0.38158	1	24705	24705		43.858	0	1	3206100			13726	9718	9983	10059	13367	13367					0.025115437858630685
EVTVFNMNY	9	Unmodified	_EVTVFNMNY_					0	0	0		tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1	tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1	tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1	MSMS	A375_MHC_IP_R1	1	558.6710205078125	2	558.755149	1115.49575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.806	1	48.806	48.306	49.306	0								0	0	0	0.1535	1	17238	17238		15.847	5.0233	1				13727	29916	9984	10060	13368	13368					-0.05738199908023489
EVTYELDH	8	Unmodified	_EVTYELDH_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q831Sfs*11|1|0.38|ENSG00000125107|chr16:58555897-58555898|-/A|frameshift_variant	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	A375_MHC_IP_R1	1	502.6218566894531	2	503.229822	1004.44509	0.089326	4.4951E-05	-0.75644	-0.00038067	-0.66712	-0.00033571	503.22933870912306	48.832	0.65769	48.832	48.526	49.184	0					20	12	3	0	0	0	0.77488	1	17275	17275		13.508	4.1604	1	2383400			13728	3941	9985	10061	13369	13369					-0.05695405961364486
EVTYELDH	8	Unmodified	_EVTYELDH_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q831Sfs*11|1|0.38|ENSG00000125107|chr16:58555897-58555898|-/A|frameshift_variant	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	A375_MHC_IP_R2	2	502.62158203125	2	503.229822	1004.44509	-0.54923	-0.00027639	-0.22657	-0.00011402	-0.7758	-0.00039041	503.2296471987566	48.033	0.45227	48.794	48.532	48.984	0.76128					17	8	3	0	0	0	0.77488	1	18028	18028		13.508	2.684	1	2648900			13729	3941	9985	10061	13370	13370					-0.05695405961364486
EVVCRSAP	8	Unmodified	_EVVCRSAP_					0	0	0		ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	MULTI-SECPEP	A375_MHC_IP_R2	2	431.1184387207031	2	430.71837	859.422187	-0.22177	-9.552E-05	0.54879	0.00023637	0.32702	0.00014085	430.7185176991691	75.708	0.56081	76.449	76.181	76.742	0.74052					20	10	3	0	0	0	0.9187	1	28749	28749		25.399	0	1	2351400			13730	4417	9986	10062	13371	13371					-0.013147035598422008
EVVELNNAL	9	Unmodified	_EVVELNNAL_					0	0	0		ENSG00000226650|ENST00000435029|KIF4B	ENSG00000226650|ENST00000435029|KIF4B	ENSG00000226650|ENST00000435029|KIF4B	MULTI-MSMS	A375_MHC_IP_R1	1	500.694580078125	2	500.769114	999.523675	-0.38492	-0.00019276	0.091858	4.6E-05	-0.29306	-0.00014676	500.76911491419753	73.462	0.75953	73.462	73.184	73.943	0					23	14	2	0	0	0	0.55818	1	26675	26675		16.942	1.0951	1	3059500			13731	9706	9987	10063	13372	13372					0.0238944634369318
EVVGAKKQGF	10	Unmodified	_EVVGAKKQGF_					0	0	0			REV__tr|U7T609|U7T609_FUSNUPeptidaseM23domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00048PE=4SV=1	REV__tr|U7T609|U7T609_FUSNUPeptidaseM23domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00048PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	531.66650390625	2	531.800749	1061.58694	-0.68859	-0.00036619	-0.35777	-0.00019026	-1.0464	-0.00055646	531.8009213866824	64.98	0.35521	64.98	64.8	65.156	0					10	6	2	0	0	0	0.76414	1	23493	23493		26.884	9.9414	1	1667600	+		13732	28851	9988	10064	13373	13373					0.05861431851622001
EVVGAKKQGF	10	Unmodified	_EVVGAKKQGF_					0	0	0			REV__tr|U7T609|U7T609_FUSNUPeptidaseM23domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00048PE=4SV=1	REV__tr|U7T609|U7T609_FUSNUPeptidaseM23domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00048PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	531.800749	1061.58694	-0.5984	-0.00031823	0.24545	0.00013053	-0.35295	-0.0001877	532.3022048563396	64.087	0.30556	64.827	64.648	64.954	0.74023	-0.076321	0.00010015	NaN	32.305	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	912240	+		13733	28851	9988	10064							0.05861431851622001
EVVGARAAV	9	Unmodified	_EVVGARAAV_					0	0	0		ENSG00000197380|ENST00000391916|DACT3	ENSG00000197380|ENST00000391916|DACT3	ENSG00000197380|ENST00000391916|DACT3	MULTI-SECPEP	A375_MHC_IP_R2	2	436.6659851074219	2	436.253434	870.492316	-0.097049	-4.2338E-05	0.60779	0.00026515	0.51075	0.00022281	436.2537119579975	46.827	0.25246	47.588	47.412	47.664	0.76128					6	4	2	0	0	0	0.53748	1	17573	17573		18.146	3.3081	1	916580			13734	9150	9989	10065	13374	13374					0.051889181002820806
EVVIMRDY	8	Unmodified	_EVVIMRDY_					0	0	0		ENSG00000130669|ENST00000360442|PAK4;nc|ENSG00000130669|O96013-2|PAK4;nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4;ENSG00000101349|ENST00000353224|PAK5;nc|ENSG00000137843|Q9NQU5-2|PAK6;ENSG00000137843|ENST00000560346|PAK6	ENSG00000130669|ENST00000360442|PAK4;nc|ENSG00000137843|Q9NQU5-2|PAK6	ENSG00000130669|ENST00000360442|PAK4	MULTI-MSMS	A375_MHC_IP_R1	1	513.181884765625	2	512.760235	1023.50592	-0.52743	-0.00027044	-0.91898	-0.00047122	-1.4464	-0.00074166	513.2608248827054	34.569	0.20104	34.569	34.456	34.657	0					5	3	2	0	0	0	0.77515	1	11407	11407		12.532	0	1	1460100			13735	4261;4928	9990	10066	13375	13375					-0.004895921827937855
EVVIQAIREF	10	Unmodified	_EVVIQAIREF_					0	0	0		RAPGEF2|p.I1087Ffs*98|1|0.31|ENSG00000109756|chr4:159350159-159350159|A/-|frameshift_variant;nc|ENSG00000109756|Q9Y4G8|RAPGEF2;ENSG00000109756|ENST00000691494|RAPGEF2	RAPGEF2|p.I1087Ffs*98|1|0.31|ENSG00000109756|chr4:159350159-159350159|A/-|frameshift_variant	RAPGEF2|p.I1087Ffs*98|1|0.31|ENSG00000109756|chr4:159350159-159350159|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	602.740966796875	2	602.340238	1202.66592	-0.52286	-0.00031494	0.051889	3.1255E-05	-0.47097	-0.00028369	602.3401771171204	98.017	0.56018	98.777	98.538	99.098	0.75977					17	10	3	0	0	0	0.70012	1	37194	37194		12.241	1.4411	1	2543500			13736	2888	9991	10067	13376	13376					0.07269659085886815
EVVKLLQSH	9	Unmodified	_EVVKLLQSH_					0	0	0		nc|ENSG00000165887|Q9GZV1-2|ANKRD2;ENSG00000165887|ENST00000370655|ANKRD2;nc|ENSG00000165887|Q9GZV1|ANKRD2	nc|ENSG00000165887|Q9GZV1-2|ANKRD2	nc|ENSG00000165887|Q9GZV1-2|ANKRD2	MULTI-MSMS	A375_MHC_IP_R1	1	351.94146728515625	3	351.541475	1051.60259	-0.35915	-0.00012626	0.18498	6.5027E-05	-0.17417	-6.1229E-05	351.5414968717473	32.51	0.50359	32.51	32.383	32.887	0					15	9	2	0	0	0	0.27715	1	10657	10657		23.79	1.1317	1	1913700			13737	6997	9992	10068	13377	13377					0.07885718368675043
EVVKLLQSH	9	Unmodified	_EVVKLLQSH_					0	0	0		nc|ENSG00000165887|Q9GZV1-2|ANKRD2;ENSG00000165887|ENST00000370655|ANKRD2;nc|ENSG00000165887|Q9GZV1|ANKRD2	nc|ENSG00000165887|Q9GZV1-2|ANKRD2	nc|ENSG00000165887|Q9GZV1-2|ANKRD2	MULTI-MATCH	A375_MHC_IP_R2	2		3	351.541475	1051.60259	-0.25367	-8.9175E-05	0.48247	0.00016961	0.2288	8.0431E-05	351.54156092782097	31.588	0.55682	32.325	32.198	32.755	0.73692	-0.092257	0.00021141	NaN	23.79	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1764700			13738	6997	9992	10068							0.07885718368675043
EVVKPLQLK	9	Unmodified	_EVVKPLQLK_					0	0	0		ENST00000319801.9_1_2:20508304-20508337:-|nuORF	ENST00000319801.9_1_2:20508304-20508337:-|nuORF	ENST00000319801.9_1_2:20508304-20508337:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	352.2933044433594	3	351.893737	1052.65938	-0.45544	-0.00016027	0.061597	2.1675E-05	-0.39384	-0.00013859	351.89353811021874	30.112	0.60421	30.112	29.949	30.553	0					17	11	2	0	0	0	0.51106	1	9572	9572		13.615	2.1202	1	4351500			13739	10684	9993	10069	13378	13378					0.13515765925171763
EVVMPIWDRNP	11	Unmodified	_EVVMPIWDRNP_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MULTI-SECPEP	A375_MHC_IP_R2	2	452.65478515625	3	452.564062	1354.67036	-0.54686	-0.00024749	1.426	0.00064536	0.87915	0.00039787	452.5647767297496	58.306	0.60971	59.055	58.779	59.389	0.74894					23	11	3	0	0	0	0.99482	1	22126	22126		6.2344	4.9047	1	2316500	+		13740	19731	9994	10070	13379	13379					0.007208002371498878
EVVMRVTSV	9	Unmodified	_EVVMRVTSV_					0	0	0		ENSG00000183654|ENST00000332432|MARCHF11;nc|ENSG00000183654|A6NNE9-2|MARCHF11	ENSG00000183654|ENST00000332432|MARCHF11	ENSG00000183654|ENST00000332432|MARCHF11	MSMS	A375_MHC_IP_R1	1	510.6822509765625	2	510.281334	1018.54812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.6	1	129.6	129.1	130.1	0								0	0	0	0.15486	1	49851	49851		10.824	0	1				13741	8514	9995	10071	13380	13380					0.03958383225608486
EVVNRLFEDPE	11	Unmodified	_EVVNRLFEDPE_					0	0	0		ENSG00000086288|ENST00000199447|NME8	ENSG00000086288|ENST00000199447|NME8	ENSG00000086288|ENST00000199447|NME8	MULTI-SECPEP	A375_MHC_IP_R2	2	449.15045166015625	3	449.557741	1345.6514	-0.23132	-0.00010399	0.23049	0.00010362	-0.00083485	-3.7531E-07	449.557983309596	27.313	0.35639	27.991	27.843	28.2	0.67857					8	6	2	0	0	0	0.9907	1	9383	9383		9.2438	4.5279	1	1092400			13742	1834	9996	10072	13381	13381					-0.007604578528798811
EVVNTIQLEPY	11	Unmodified	_EVVNTIQLEPY_					0	0	0			REV__nc|ENSG00000142192|P05067-2|APP	REV__nc|ENSG00000142192|P05067-2|APP	MULTI-SECPEP	A375_MHC_IP_R2	2	435.962158203125	3	435.562604	1303.66598	-0.33132	-0.00014431	-0.37894	-0.00016505	-0.71026	-0.00030936	435.56207781637954	40.205	0.55734	40.98	40.626	41.183	0.77451					15	6	3	0	0	0	0.99482	1	14924	14924		3.8459	0	1	2884200	+		13743	19299	9997	10073	13382	13382					0.026296142952787704
EVVQLLRRLAF	11	Unmodified	_EVVQLLRRLAF_					0	0	0			REV__ENSG00000105447|ENST00000253237|GRWD1	REV__ENSG00000105447|ENST00000253237|GRWD1	MULTI-SECPEP	A375_MHC_IP_R2	2	448.14984130859375	3	448.610111	1342.8085	-0.72119	-0.00032353	-0.92721	-0.00041596	-1.6484	-0.00073949	448.60962290962607	36.613	0.30521	37.384	37.207	37.513	0.7709					9	5	2	0	0	0	0.99606	1	13285	13285		0.08335	0	1	2033800	+		13744	17385	9998	10074	13383	13383					0.1508129154794915
EVVQRFLMA	9	Unmodified	_EVVQRFLMA_					0	0	0		ENST00000531579.5_1_11:62569692-62572835:-|nuORF	ENST00000531579.5_1_11:62569692-62572835:-|nuORF	ENST00000531579.5_1_11:62569692-62572835:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	547.1969604492188	2	546.797152	1091.57975	-0.73195	-0.00040023	0.39151	0.00021408	-0.34044	-0.00018615	546.7973441581754	66.425	0.40883	66.425	66.275	66.684	0					12	7	3	0	0	0	0.71071	1	24075	24075		14.838	3.198	1	1749100			13745	13173	9999	10075	13384	13384					0.037623759795451406
EVVRRKLGTHY	11	Unmodified	_EVVRRKLGTHY_					0	0	0		ENSG00000163389|ENST00000295588|POGLUT1;ENST00000390401.2_1_3:119187859-119190300:+|nuORF	ENSG00000163389|ENST00000295588|POGLUT1	ENSG00000163389|ENST00000295588|POGLUT1	MSMS	A375_MHC_IP_R2	2	679.3887329101562	2	679.388585	1356.76262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.947	1	75.684	75.184	76.184	0.73752								0	0	0	0.16297	1	28448	28448		3.2813	0	1				13746	6657	10000	10076	13385	13385					0.09850646365725879
EVVSPMIEIY	10	Unmodified	_EVVSPMIEIY_					0	0	0			REV__WNT3|p.A70V|1|0.45|ENSG00000108379|chr17:46773781-46773781|G/A|missense_variant	REV__WNT3|p.A70V|1|0.45|ENSG00000108379|chr17:46773781-46773781|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	590.7169799804688	2	590.301933	1178.58931	-0.65124	-0.00038443	-1.9253	-0.0011365	-2.5765	-0.0015209	590.3005271253229	50.911	0.2517	51.665	51.513	51.765	0.75406					6	4	2	0	0	0	0.70496	1	19101	19101		10.074	0.6908	1	866420	+		13747	28998	10001	10077	13386	13386					0.007160994744026539
EVVYHTAWIRE	11	Unmodified	_EVVYHTAWIRE_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MSMS	A375_MHC_IP_R1	1	701.8594360351562	2	701.859326	1401.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.736	1	89.736	89.236	90.236	0								0	0	0	0.16265	1	32969	32969		4.897	0	1				13748	3923	10002	10078	13387	13387					0.01931545000547885
EVWAKAEQF	9	Unmodified	_EVWAKAEQF_					0	0	0			REV__MAN1C1|p.G244E|1|0.39|ENSG00000117643|chr1:25746761-25746761|G/A|missense_variant	REV__MAN1C1|p.G244E|1|0.39|ENSG00000117643|chr1:25746761-25746761|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	554.2551879882812	2	554.277106	1106.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.002	1	45.002	44.502	45.502	0								0	0	0	0.15411	1	15725	15725		14.838	2.3067	1		+		13749	26982	10003	10079	13388	13388					-0.009348474193984657
EVWDSDVE	8	Unmodified	_EVWDSDVE_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4;REV__nc|ENSG00000127481|Q5T4S7-5|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MSMS	A375_MHC_IP_R1	1	489.6141662597656	2	489.70618	977.397806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.952	1	36.952	36.452	37.452	0								0	0	0	0.16876	1	12418	12418		26.341	3.1929	1		+		13750	18422;27212	10004	10080	13389	13389					-0.09179685232368229
EVWGDNPLL	9	Unmodified	_EVWGDNPLL_					0	0	0			REV__PARD3B|p.A651V|1|0.27|ENSG00000116117|chr2:205185791-205185791|C/T|missense_variant	REV__PARD3B|p.A651V|1|0.27|ENSG00000116117|chr2:205185791-205185791|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	521.66455078125	2	521.763832	1041.51311	-0.30239	-0.00015778	0.33532	0.00017496	0.032932	1.7183E-05	521.7640865495831	106.75	0.81778	106.75	106.37	107.19	0					36	15	3	0	0	0	0.67332	1	39107	39107		9.3831	0.63772	1	6900400	+		13751	27716	10005	10081	13390	13390					-0.00598536310712916
EVWQQEEF	8	Unmodified	_EVWQQEEF_					0	0	0		ENSG00000213160|ENST00000392647|KLHL23	ENSG00000213160|ENST00000392647|KLHL23	ENSG00000213160|ENST00000392647|KLHL23	MSMS	A375_MHC_IP_R2	2	547.6971435546875	2	547.743096	1093.47164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.011	1	61.756	61.256	62.256	0.74503								0	0	0	0.16876	1	23115	23115		14.582	2.0501	1				13752	9555	10006	10082	13391	13391					-0.07135717070036662
EVWRAQQSK	9	Unmodified	_EVWRAQQSK_					0	0	0			REV__ENSG00000152104|ENST00000366956|PTPN14	REV__ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	A375_MHC_IP_R1	1	378.2684020996094	3	377.868362	1130.58326	0.42327	0.00015994	-0.050903	-1.9235E-05	0.37237	0.00014071	377.86833603488225	36.007	0.86691	36.007	35.472	36.339	0					36	16	3	0	0	0	0.29981	1	12001	12001		22.658	0	1	7906200	+		13753	19791	10007	10083	13392	13392					0.023187620777662232
EVWRAQQSK	9	Unmodified	_EVWRAQQSK_					0	0	0			REV__ENSG00000152104|ENST00000366956|PTPN14	REV__ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	A375_MHC_IP_R2	2	378.26837158203125	3	377.868362	1130.58326	-0.080223	-3.0314E-05	0.10802	4.0818E-05	0.027797	1.0504E-05	377.86845221363313	35.147	0.70742	35.911	35.475	36.183	0.76338					28	13	4	0	0	0	0.29981	1	12729	12729		22.658	0	1	11316000	+		13754	19791	10007	10083	13393	13393					0.023187620777662232
EVWSDDSHF	9	Unmodified	_EVWSDDSHF_					0	0	0			REV__nc|ENSG00000112964|P10912-4|GHR	REV__nc|ENSG00000112964|P10912-4|GHR	MULTI-MSMS	A375_MHC_IP_R2	2	561.6304321289062	2	561.230353	1120.44615	-0.66323	-0.00037222	-0.60136	-0.0003375	-1.2646	-0.00070973	561.2299166492355	66.929	0.76213	67.665	67.342	68.104	0.73631					21	14	2	0	0	0	0.6898	1	25370	25370		7.9102	2.1497	1	1620600	+		13755	17761	10008	10084	13394	13394					-0.10925191592468764
EVWSRHASLS	10	Unmodified	_EVWSRHASLS_					0	0	0			REV__ENST00000575164.1_1_16:2903096-2905944:-|nuORF	REV__ENST00000575164.1_1_16:2903096-2905944:-|nuORF	MSMS	A375_MHC_IP_R2	2	585.9429321289062	2	586.296362	1170.57817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.13	1	114.84	114.34	115.34	0.70985								0	0	0	0.15353	1	43036	43036		9.3831	0.78985	1		+		13756	16108	10009	10085	13395	13395					-0.00029541784874709265
EVWTFPLFV	9	Unmodified	_EVWTFPLFV_					0	0	0			REV__ENSG00000138604|ENST00000261858|GLCE	REV__ENSG00000138604|ENST00000261858|GLCE	MULTI-SECPEP	A375_MHC_IP_R2	2	569.7020263671875	2	569.302593	1136.59063	-0.50023	-0.00028478	-0.7464	-0.00042493	-1.2466	-0.00070971	569.8038029651409	65.865	1.7803	66.603	65.461	67.241	0.73811					61	34	3	0	0	0	0.55359	1	24988	24988		15.847	4.2069	1	2281100	+		13757	19100	10010	10086	13396	13396					0.02780101625444331
EVWWYLLMRLG	11	Unmodified	_EVWWYLLMRLG_					0	0	0		ENSG00000080345|ENST00000444746|RIF1;nc|ENSG00000080345|Q5UIP0-2|RIF1	ENSG00000080345|ENST00000444746|RIF1	ENSG00000080345|ENST00000444746|RIF1	MULTI-MSMS	A375_MHC_IP_R1	1	733.7857055664062	2	733.386665	1464.75878	-0.5898	-0.00043255	-0.88084	-0.000646	-1.4706	-0.0010786	733.3858750375149	53.404	0.6595	53.404	52.997	53.656	0					29	12	3	0	0	0	0.72649	1	19022	19022		12.241	3.4953	1	3914400			13758	1712	10011	10087	13397	13397					0.04498840547603322
EVWWYLLMRLG	11	Unmodified	_EVWWYLLMRLG_					0	0	0		ENSG00000080345|ENST00000444746|RIF1;nc|ENSG00000080345|Q5UIP0-2|RIF1	ENSG00000080345|ENST00000444746|RIF1	ENSG00000080345|ENST00000444746|RIF1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	733.386665	1464.75878	-1.2943	-0.00094921	-0.61493	-0.00045098	-1.9092	-0.0014002	733.8873417185872	52.68	0.65707	53.432	53.032	53.689	0.75176	0.013821	0.00023556	NaN	12.241	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2329600			13759	1712	10011	10087							0.04498840547603322
EVYCQVLGNA	10	Unmodified	_EVYCQVLGNA_					0	0	0		nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2;ENSG00000253910|ENST00000522605|PCDHGB2	nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	MSMS	A375_MHC_IP_R2	2	548.19482421875	2	548.260599	1094.50665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.777	1	68.513	68.013	69.013	0.73565								0	0	0	0.15265	1	25683	25683		12.241	1.1262	1				13760	9871	10012	10088	13398	13398					-0.036827975337246244
EVYDDRSM	8	Unmodified	_EVYDDRSM_					0	0	0		tr|U7SI07|U7SI07_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02184PE=4SV=1	tr|U7SI07|U7SI07_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02184PE=4SV=1	tr|U7SI07|U7SI07_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02184PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	507.980224609375	2	507.713482	1013.41241	-0.69273	-0.00035171	-0.12875	-6.5368E-05	-0.82148	-0.00041708	507.7133738487122	67.048	1.0205	67.048	66.734	67.754	0					26	19	2	0	0	0	0.972	1	24418	24418		9.3474	0	1	1865000			13761	29427	10013	10089	13399	13399					-0.09375936355877457
EVYDHYYCNN	10	Unmodified	_EVYDHYYCNN_					0	0	0			REV__ADAM29|p.G104D|1|0.28|ENSG00000168594|chr4:174975836-174975836|G/A|missense_variant	REV__ADAM29|p.G104D|1|0.28|ENSG00000168594|chr4:174975836-174975836|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	660.2151489257812	2	660.253502	1318.49245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.939	1	84.939	84.439	85.439	0								0	0	0	0.15531	1	31121	31121		3.5965	0.60125	1		+		13762	15317	10014	10090	13400	13400					-0.15405494752667437
EVYDLMRQCWW	11	Unmodified	_EVYDLMRQCWW_					0	0	0		TEK|p.R1076W|1|0.4|ENSG00000120156|chr9:27228231-27228231|C/T|missense_variant	TEK|p.R1076W|1|0.4|ENSG00000120156|chr9:27228231-27228231|C/T|missense_variant	TEK|p.R1076W|1|0.4|ENSG00000120156|chr9:27228231-27228231|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	764.7678833007812	2	764.839222	1527.66389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.204	1	75.941	75.441	76.441	0.73752								0	0	0	0.16302	1	28544	28544		2.9952	1.5133	1				13763	29319	10015	10091	13401	13401					-0.07883460985863167
EVYDRAPY	8	Unmodified	_EVYDRAPY_					0	0	0			REV__ENST00000502506.6_1_19:19626614-19626731:+|nuORF	REV__ENST00000502506.6_1_19:19626614-19626731:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.13970947265625	2	506.740357	1011.46616	-0.40431	-0.00020488	-0.47731	-0.00024187	-0.88161	-0.00044675	506.7400797051532	59.228	0.50916	59.228	58.938	59.448	0					21	9	3	0	0	0	0.972	1	21305	21305		7.9102	0.62092	1	1980200	+		13764	25501	10016	10092	13402	13402					-0.039113958618713696
EVYESNDNVNF	11	Unmodified	_EVYESNDNVNF_					0	0	0			REV__nc|ENSG00000173692|Q99460-2|PSMD1	REV__nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	A375_MHC_IP_R2	2	665.224609375	2	665.283314	1328.55207	-0.8495	-0.00056516	0.2218	0.00014756	-0.6277	-0.0004176	665.2834455936114	64.906	0.60964	65.644	65.308	65.918	0.73812					22	11	3	0	0	0	0.73332	1	24497	24497		5.7319	0	1	2849100	+		13765	21239	10017	10093	13403	13403					-0.09905900537660273
EVYEYAREQH	10	Unmodified	_EVYEYAREQH_					0	0	0			REV__ENSG00000004961|ENST00000380762|HCCS	REV__ENSG00000004961|ENST00000380762|HCCS	MSMS	A375_MHC_IP_R1	1	662.3025512695312	2	662.301841	1322.58913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.05	1	122.05	121.55	122.55	0								0	0	0	0.15353	1	45374	45374		9.3831	0	1		+		13766	16106	10018	10094	13404	13404					-0.05926184201234719
EVYFRQDV	8	Unmodified	_EVYFRQDV_					0	0	0		nc|ENSG00000273540|Q96MI9|AGBL1;ENSG00000273540|ENST00000614907|AGBL1	nc|ENSG00000273540|Q96MI9|AGBL1	nc|ENSG00000273540|Q96MI9|AGBL1	MULTI-MSMS	A375_MHC_IP_R1	1	529.2152709960938	2	528.261456	1054.50836	-0.73131	-0.00038632	-0.19198	-0.00010142	-0.92329	-0.00048774	528.7631827881992	68.496	0.35558	68.496	68.209	68.565	0					12	6	3	0	0	0	0.7754	1	24789	24789		11.64	1.5664	1	1053600			13767	9998	10019	10095	13405	13405					-0.016714204534764576
EVYKNFDP	8	Unmodified	_EVYKNFDP_					0	0	0		tr|U7T352|U7T352_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00398PE=4SV=1	tr|U7T352|U7T352_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00398PE=4SV=1	tr|U7T352|U7T352_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00398PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	506.6428527832031	2	506.242732	1010.47091	-0.77453	-0.0003921	1.0822	0.00054788	0.30772	0.00015578	506.24317998018927	80.646	1.1198	81.391	80.961	82.08	0.74474					27	21	2	0	0	0	0.92636	1	30582	30582		7.2892	7.2892	1	2184100			13768	29957	10020	10096	13406	13406					-0.033905117191011414
EVYQLLYVW	9	Unmodified	_EVYQLLYVW_					0	0	0			REV__ENST00000556782.5_1_14:45553435-45564778:+|nuORF	REV__ENST00000556782.5_1_14:45553435-45564778:+|nuORF	MSMS	A375_MHC_IP_R2	2	404.9104309082031	3	404.881497	1211.62266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.929	1	24.56	24.06	25.06	0.63014								0	0	0	0.15486	1	7777	7777		12.241	2.0901	1		+		13769	21880	10021	10097	13407	13407					0.025314693086102125
EVYRAVTPL	9	Unmodified	_EVYRAVTPL_					0	0	0		nc|ENSG00000179344|P01920|HLA-DQB1	nc|ENSG00000179344|P01920|HLA-DQB1	nc|ENSG00000179344|P01920|HLA-DQB1	MULTI-MSMS	A375_MHC_IP_R2	2	524.922607421875	2	524.295299	1046.57605	-0.48331	-0.0002534	-0.1686	-8.8395E-05	-0.65191	-0.00034179	524.2951891274188	64.638	2.1373	65.378	64.954	67.091	0.74023					109	41	5	0	0	0	0.51106	1	24950	24950		19.257	1.122	1	90025000			13770	14792	10022	10098	13408	13408					0.05462029477325814
EVYREKMVKKH	11	Unmodified	_EVYREKMVKKH_					0	0	0			REV__ENSG00000103067|ENST00000473183|ESRP2	REV__ENSG00000103067|ENST00000473183|ESRP2	MULTI-MSMS	A375_MHC_IP_R2	2	723.9530639648438	2	723.897928	1445.7813	-0.85202	-0.00061677	-3.1139	-0.0022541	-3.9659	-0.0028709	723.8973289925376	97.855	0.25575	98.611	98.534	98.79	0.75586					6	4	2	0	0	0	0.73378	1	37181	37181		5.2969	0	1	611640	+		13771	17251	10023	10099	13409	13409					0.07624439945220729
EVYRGRLF	8	Unmodified	_EVYRGRLF_					0	0	0			REV__ENST00000530213.5_1_11:64809351-64812196:+|nuORF	REV__ENST00000530213.5_1_11:64809351-64812196:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	520.6875610351562	2	520.287808	1038.56106	-0.33735	-0.00017552	-0.49222	-0.0002561	-0.82958	-0.00043162	520.2873299683594	71.39	0.50619	71.39	71.159	71.665	0					15	9	2	0	0	0	0.90224	1	25962	25962		13.508	6.2187	1	4247200	+		13772	20824	10024	10100	13410	13410					0.04332582399979401
EVYSWGCGD	9	Unmodified	_EVYSWGCGD_					0	0	0		HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant;ENSG00000128731|ENST00000261609|HERC2;HERC2|p.I993Lfs*32|1|0.27|ENSG00000128731|chr15:28254414-28254414|A/-|frameshift_variant	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	MSMS	A375_MHC_IP_R1	1	508.4508056640625	2	508.194925	1014.3753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.924	1	82.924	82.424	83.424	0								0	0	0	0.15486	1	30334	30334		7.9102	1.187	1				13773	14109	10025	10101	13411	13411					-0.13131607901641473
EVYTHGDER	9	Unmodified	_EVYTHGDER_					0	0	0			REV__ENSG00000127311|ENST00000247815|HELB	REV__ENSG00000127311|ENST00000247815|HELB	MULTI-MSMS	A375_MHC_IP_R2	2	553.64892578125	2	553.249077	1104.4836	-0.70937	-0.00039246	0.099584	5.5095E-05	-0.60978	-0.00033736	553.249054112262	63.861	0.55822	64.602	64.344	64.902	0.74022					16	10	2	0	0	0	0.65721	1	24249	24249		10.824	0.64053	1	1668500	+		13774	18414	10026	10102	13412	13412					-0.06446100326866144
EVYTKQGF	8	Unmodified	_EVYTKQGF_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MULTI-MSMS	A375_MHC_IP_R2	2	486.6971740722656	2	486.245275	970.475997	-0.67301	-0.00032725	0.20321	9.881E-05	-0.46979	-0.00022844	486.24538220545776	66.863	0.91519	67.599	67.24	68.155	0.73631					40	17	4	0	0	0	0.73946	1	25424	25424		23.148	6.2061	1	8386600			13775	2212	10027	10103	13413	13413					-0.010422078564715775
EWAQLRRE	8	Unmodified	_EWAQLRRE_					0	0	0			REV__ENST00000537880.1_1_12:110353099-110354425:+|nuORF	REV__ENST00000537880.1_1_12:110353099-110354425:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	544.2293701171875	2	544.285797	1086.55704	-0.76441	-0.00041606	1.6875	0.00091851	0.92313	0.00050245	544.2869438194333	63.415	1.4197	64.156	63.178	64.597	0.74022					37	27	2	0	0	0	0.77602	1	24056	24056		7.9102	0	1	7209800	+		13776	19157	10028	10104	13414	13414					0.01722492906287698
EWCSRCFQHQ	10	Unmodified	_EWCSRCFQHQ_					0	0	0			REV__ENST00000459976.2_1_3:49002373-49005591:+|nuORF	REV__ENST00000459976.2_1_3:49002373-49005591:+|nuORF	MSMS	A375_MHC_IP_R1	1	662.3704833984375	2	662.271506	1322.52846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.75	1	83.75	83.25	84.25	0								0	0	0	0.15465	1	30653	30653		5.7319	0.43497	1		+		13777	21460	10029	10105	13415	13415					-0.11990316056812844
EWDRWMVRFYY	11	Unmodified	_EWDRWMVRFYY_					0	0	0			REV__ENST00000558045.2_1_14:24608221-24608440:-|nuORF	REV__ENST00000558045.2_1_14:24608221-24608440:-|nuORF	MSMS	A375_MHC_IP_R1	1	825.9735107421875	2	825.879736	1649.74492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.335	1	93.335	92.835	93.835	0								0	0	0	0.1636	1	34308	34308		0	0	1		+		13778	26133	10030	10106	13416	13416					-0.05396436951468786
EWDRWMVRFYY	11	Unmodified	_EWDRWMVRFYY_					0	0	0			REV__ENST00000558045.2_1_14:24608221-24608440:-|nuORF	REV__ENST00000558045.2_1_14:24608221-24608440:-|nuORF	MSMS	A375_MHC_IP_R1	1	825.9838256835938	2	825.879736	1649.74492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.359	1	93.359	92.859	93.859	0								0	0	0	0.1636	1	34317	34317		0	0	1		+		13779	26133	10030	10106	13417	13417					-0.05396436951468786
EWERKYREWYE	11	Unmodified	_EWERKYREWYE_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;RBBP6|p.E1056Nfs*55|1|0.28|ENSG00000122257|chr16:24569855-24569855|T/-|frameshift_variant	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MSMS	A375_MHC_IP_R1	1	558.6661987304688	3	558.595078	1672.76341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.648	1	48.648	48.148	49.148	0								0	0	0	0.16351	1	17174	17174		0.45452	0	1				13780	3771	10031	10107	13418	13418					-0.04606603775914664
EWERKYREWYE	11	Unmodified	_EWERKYREWYE_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;RBBP6|p.E1056Nfs*55|1|0.28|ENSG00000122257|chr16:24569855-24569855|T/-|frameshift_variant	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MSMS	A375_MHC_IP_R1	1	558.6431274414062	3	558.595078	1672.76341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.715	1	86.715	86.215	87.215	0								0	0	0	0.16313	1	31803	31803		2.4348	2.4348	1				13781	3771	10031	10107	13419	13419					-0.04606603775914664
EWFEEWQAELK	11	Unmodified	_EWFEEWQAELK_					0	0	0		ENSG00000042445|ENST00000295802|RETSAT	ENSG00000042445|ENST00000295802|RETSAT	ENSG00000042445|ENST00000295802|RETSAT	MULTI-SECPEP	A375_MHC_IP_R2	2	748.248291015625	2	747.848624	1493.6827	-0.84629	-0.0006329	-0.29607	-0.00022142	-1.1424	-0.00085432	747.8483887275881	45.883	0.65404	46.649	46.201	46.855	0.76519					21	12	2	0	0	0	0.99883	1	17104	17104		5.7319	2.9967	1	2877000			13782	1174	10032	10108	13420	13420					-0.04439884818839346
EWFWWYWQKEK	11	Unmodified	_EWFWWYWQKEK_					0	0	0		nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;ENSG00000001036|ENST00000002165|FUCA2	nc|ENSG00000001036|Q9BTY2-2|FUCA2	nc|ENSG00000001036|Q9BTY2-2|FUCA2	MULTI-SECPEP	A375_MHC_IP_R2	2	573.003662109375	3	572.605026	1714.79325	-1.0836	-0.00062046	-1.0623	-0.00060827	-2.1459	-0.0012287	572.604526584324	29.308	0.30539	30.007	29.93	30.236	0.69872					8	5	2	0	0	0	1.0015	1	10262	10262		0	0	1	3845800			13783	841	10033	10109	13421	13421					-0.03555620039946916
EWFYEERAKKF	11	Unmodified	_EWFYEERAKKF_					0	0	0		nc|ENSG00000164674|Q4VX76-2|SYTL3;ENSG00000164674|ENST00000611299|SYTL3	nc|ENSG00000164674|Q4VX76-2|SYTL3	nc|ENSG00000164674|Q4VX76-2|SYTL3	MSMS	A375_MHC_IP_R2	2	511.6264343261719	3	511.589265	1531.74596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.036	1	48.797	48.297	49.297	0.76128								0	0	0	0.16336	1	18030	18030		1.2148	0.588	1				13784	6863	10034	10110	13422	13422					0.001361006890419958
EWGGYPAAQ	9	Unmodified	_EWGGYPAAQ_					0	0	0			REV__ENSG00000183066|ENST00000328823|WBP2NL	REV__ENSG00000183066|ENST00000328823|WBP2NL	MSMS	A375_MHC_IP_R2	2	489.6795349121094	2	489.719424	977.424296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.869	1	25.512	25.012	26.012	0.64368								0	0	0	0.15486	1	8242	8242		7.9102	2.1497	1		+		13785	21732	10035	10111	13423	13423					-0.06531951550391568
EWGLTVTQAG	10	Unmodified	_EWGLTVTQAG_					0	0	0		nc|ENSG00000163297|P58335-3|ANTXR2	nc|ENSG00000163297|P58335-3|ANTXR2	nc|ENSG00000163297|P58335-3|ANTXR2	MULTI-MSMS	A375_MHC_IP_R1	1	531.7391357421875	2	531.266739	1060.51892	-0.59714	-0.00031724	-0.45255	-0.00024042	-1.0497	-0.00055766	531.2664579671552	75.378	0.9068	75.378	74.908	75.815	0					35	17	3	0	0	0	0.69833	1	27457	27457		13.042	13.042	1	6065400			13786	14717	10036	10112	13424	13424					-0.008914377990549838
EWGLTVTQAG	10	Unmodified	_EWGLTVTQAG_					0	0	0		nc|ENSG00000163297|P58335-3|ANTXR2	nc|ENSG00000163297|P58335-3|ANTXR2	nc|ENSG00000163297|P58335-3|ANTXR2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	531.266739	1060.51892	-0.59714	-0.00031724	-0.45255	-0.00024042	-1.0497	-0.00055766	531.2664579671552	75.378	0.9068	75.378	74.908	75.815	0	-0.030477	-0.00015915	NaN	13.042	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6065400			13787	14717	10036	10112							-0.008914377990549838
EWIRVLKHQFE	11	Unmodified	_EWIRVLKHQFE_					0	0	0			REV__ENSG00000122477|ENST00000370137|LRRC39	REV__ENSG00000122477|ENST00000370137|LRRC39	MSMS	A375_MHC_IP_R1	1	742.7741088867188	2	742.904068	1483.79358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.33	1	115.33	114.83	115.83	0								0	0	0	0.16258	1	42292	42292		5.2969	0	1		+		13788	18207	10037	10113	13425	13425					0.07103799679930489
EWKKALKKR	9	Unmodified	_EWKKALKKR_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-MSMS	A375_MHC_IP_R2	2	396.9290771484375	3	396.252147	1185.73461	-0.052815	-2.0928E-05	-0.10878	-4.3106E-05	-0.1616	-6.4033E-05	396.2521323181552	42.653	0.60857	43.425	43.116	43.724	0.7724					24	11	3	0	0	0	0.75032	2	15844	15844;15881		2.4985	0	1	5479300	+		13789	21096	10038	10114	13426;13427	13426					0.14917368176247692
EWKKREND	8	Unmodified	_EWKKREND_					0	0	0			REV__KIAA0408|p.E31K|1|0.39|ENSG00000189367|chr6:127453891-127453891|C/T|missense_variant	REV__KIAA0408|p.E31K|1|0.39|ENSG00000189367|chr6:127453891-127453891|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	553.1755981445312	2	552.775262	1103.53597	-0.60767	-0.00033591	1.3696	0.00075707	0.76191	0.00042117	552.7761169698437	58.353	0.55878	58.353	58.126	58.685	0					14	10	2	0	0	0	0.76654	1	20992	20992		15.847	3.6065	1	1657800	+		13790	26841	10039	10115	13428	13428					-0.01165517193226151
EWKVKEKYKKF	11	Unmodified	_EWKVKEKYKKF_					0	0	0			REV__nc|ENSG00000125388|P32298-3|GRK4	REV__nc|ENSG00000125388|P32298-3|GRK4	MULTI-MSMS	A375_MHC_IP_R2	2	505.3570861816406	3	504.957288	1511.85004	-0.50068	-0.00025282	0.14053	7.0962E-05	-0.36015	-0.00018186	504.9573798927155	143.14	0.4025	143.17	142.94	143.34	0.030731					11	7	2	0	0	0	0.73891	1	55978	55978		0.40827	0.31342	1	795670	+		13791	18339	10040	10116	13429	13429					0.11458427516572556
EWLERPPPWS	10	Unmodified	_EWLERPPPWS_					0	0	0			REV__ENST00000399441.4_1_18:21977626-21977716:-|nuORF	REV__ENST00000399441.4_1_18:21977626-21977716:-|nuORF	MSMS	A375_MHC_IP_R1	1	433.2854309082031	3	432.8839	1295.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.6	1	108.6	108.1	109.1	0								0	0	0	0.15596	1	39839	39839		0.62683	0	1		+		13792	24393	10041	10117	13430	13430					-0.006117980909493781
EWLLSVSIY	9	Unmodified	_EWLLSVSIY_					0	0	0		ENST00000581582.1_1_19:40788282-40788770:-|nuORF	ENST00000581582.1_1_19:40788282-40788770:-|nuORF	ENST00000581582.1_1_19:40788282-40788770:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	370.2487487792969	3	370.534097	1108.58046	0.18231	6.7553E-05	4.3707	0.0016195	4.553	0.001687	370.53583363902874	19.495	0.20295	19.495	19.42	19.623	0					5	3	2	0	0	0	0.62767	1	4893	4893		11.495	2.5185	1	1247500			13793	13684	10042	10118	13431	13431					0.030514939002614483
EWLMHPNHS	9	Unmodified	_EWLMHPNHS_					0	0	0			REV__chr13:60405070-60439688|259|33.8|0.38|6.48|+|0|TE_info:THE1B,THE1B_dup17685,ERVL-MaLR,LTR,donor,+,60404788,60405070|None,TDRD3|1	REV__chr13:60405070-60439688|259|33.8|0.38|6.48|+|0|TE_info:THE1B,THE1B_dup17685,ERVL-MaLR,LTR,donor,+,60404788,60405070|None,TDRD3|1	MULTI-SECPEP	A375_MHC_IP_R2	2	575.6596069335938	2	575.758558	1149.50256	-0.010251	-5.9022E-06	2.229	0.0012834	2.2188	0.0012775	575.7605896949456	85.749	0.25381	86.485	86.341	86.595	0.73601					6	4	2	0	0	0	0.65246	1	32610	32610		15.847	8.558	1	932590	+		13794	15698	10043	10119	13432	13432					-0.06620842236816316
EWLNFDLSPDD	11	Unmodified	_EWLNFDLSPDD_					0	0	0		PWP1|p.P198L|1|0.36|ENSG00000136045|chr12:107696564-107696564|C/T|missense_variant	PWP1|p.P198L|1|0.36|ENSG00000136045|chr12:107696564-107696564|C/T|missense_variant	PWP1|p.P198L|1|0.36|ENSG00000136045|chr12:107696564-107696564|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	676.1956787109375	2	675.796057	1349.57756	-0.92701	-0.00062647	-0.32935	-0.00022258	-1.2564	-0.00084905	675.7961067057656	136.02	0.30801	136.02	135.84	136.15	0					11	5	3	0	0	0	0.9574	1	52422	52422		19.362	3.2128	1	3004700			13795	15257	10044	10120	13433	13433					-0.08324426015224162
EWLNFDLSPDD	11	Unmodified	_EWLNFDLSPDD_					0	0	0		PWP1|p.P198L|1|0.36|ENSG00000136045|chr12:107696564-107696564|C/T|missense_variant	PWP1|p.P198L|1|0.36|ENSG00000136045|chr12:107696564-107696564|C/T|missense_variant	PWP1|p.P198L|1|0.36|ENSG00000136045|chr12:107696564-107696564|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	676.1956176757812	2	675.796057	1349.57756	-0.53969	-0.00036472	-0.5162	-0.00034885	-1.0559	-0.00071356	675.7957595624364	135.97	0.25673	136.08	135.94	136.2	0.11133					10	4	3	0	0	0	0.69231	1	53445	53445		16.149	5.3496	1	2749700			13796	15257	10044	10120	13434	13434					-0.08324426015224162
EWLTRSPNL	9	Unmodified	_EWLTRSPNL_					0	0	0		EBPL|p.L147F|1|0.38|ENSG00000123179|chr13:49661150-49661150|G/A|missense_variant;ENST00000473576.6_1_13:50235206-50237234:-|nuORF;ENST00000378270.5_1_13:50235106-50265589:-|nuORF;ENST00000569153.1_1_16:64294558-64295142:-|nuORF;ENSG00000123179|ENST00000242827|EBPL	EBPL|p.L147F|1|0.38|ENSG00000123179|chr13:49661150-49661150|G/A|missense_variant	EBPL|p.L147F|1|0.38|ENSG00000123179|chr13:49661150-49661150|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	559.2183837890625	2	558.29583	1114.57711	-0.33905	-0.00018929	0.28047	0.00015659	-0.058573	-3.2701E-05	558.2957009125287	92.355	0.81117	92.355	91.857	92.668	0					45	15	5	0	0	0	0.41409	1	34011	34011		24.021	0.23079	1	16044000			13797	818	10045	10121	13435	13435					0.024402438462402642
EWLWKWRDAHF	11	Unmodified	_EWLWKWRDAHF_					0	0	0		nc|ENSG00000149564|Q96AP7-2|ESAM	nc|ENSG00000149564|Q96AP7-2|ESAM	nc|ENSG00000149564|Q96AP7-2|ESAM	MSMS	A375_MHC_IP_R1	1	787.3890991210938	2	787.388585	1572.76262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.56	1	117.56	117.06	118.06	0								0	0	0	0.16334	1	43194	43194		1.3295	0	1				13798	14675	10046	10122	13436	13436					-0.0008535363431292353
EWNETDTFM	9	Unmodified	_EWNETDTFM_					0	0	0			REV__nc|ENSG00000137474|Q13402-4|MYO7A;REV__nc|ENSG00000137474|Q13402-8|MYO7A	REV__nc|ENSG00000137474|Q13402-8|MYO7A	MSMS	A375_MHC_IP_R2	2	586.6499633789062	2	586.731871	1171.44919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.663	1	41.438	40.938	41.938	0.77451								0	0	0	0.15069	1	15064	15064		20.454	0	1		+		13799	27248;19009	10047	10123	13437	13437					-0.12967684530008228
EWPLKMYTKL	10	Unmodified	_EWPLKMYTKL_					0	0	0			REV__ENST00000454158.6_1_4:37614769-37614952:-|nuORF	REV__ENST00000454158.6_1_4:37614769-37614952:-|nuORF	MSMS	A375_MHC_IP_R2	2	654.7915649414062	2	654.854667	1307.69478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.41	1	134.55	134.05	135.05	0.13901								0	0	0	0.15465	1	52872	52872		5.7319	0.43497	1		+		13800	24913	10048	10124	13438	13438					0.05324060390671548
EWRERRKQLIR	11	Unmodified	_EWRERRKQLIR_					0	0	0		ENSG00000206530|ENST00000393845|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	MULTI-SECPEP	A375_MHC_IP_R1	1	524.2305297851562	3	523.974335	1568.90118	-0.43574	-0.00022832	0.36234	0.00018986	-0.073399	-3.8459E-05	523.9754860906642	101.24	0.30411	101.24	100.99	101.29	0					6	5	2	0	0	0	1.0015	1	37160	37160		0.36667	0.20735	1	553640			13801	9540	10049	10125	13439	13439					0.13948189334018934
EWRRRSMKRR	10	Unmodified	_EWRRRSMKRR_					0	0	0		ENST00000358939.8_1_15:65809863-65809971:-|nuORF	ENST00000358939.8_1_15:65809863-65809971:-|nuORF	ENST00000358939.8_1_15:65809863-65809971:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	731.2263793945312	2	730.910027	1459.8055	-0.19728	-0.00014419	-1.1269	-0.00082368	-1.3242	-0.00096787	730.9089982556833	112.61	0.56207	112.61	112.33	112.89	0					18	10	2	0	0	0	0.70651	1	41253	41253		9.3831	1.2276	1	2702200			13802	11003	10050	10126	13440	13440					0.09399137942114066
EWRRRSMKRR	10	Unmodified	_EWRRRSMKRR_					0	0	0		ENST00000358939.8_1_15:65809863-65809971:-|nuORF	ENST00000358939.8_1_15:65809863-65809971:-|nuORF	ENST00000358939.8_1_15:65809863-65809971:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	730.910027	1459.8055	-0.61164	-0.00044705	-1.3858	-0.0010129	-1.9974	-0.0014599	731.4104785634457	111.91	0.40841	112.63	112.41	112.82	0.72458	0.014913	-0.00019942	NaN	9.3831	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4644800			13803	11003	10050	10126							0.09399137942114066
EWVFHLKWWWH	11	Unmodified	_EWVFHLKWWWH_					0	0	0			REV__ENSG00000168282|ENST00000305386|MGAT2	REV__ENSG00000168282|ENST00000305386|MGAT2	MULTI-MSMS	A375_MHC_IP_R1	1	828.654296875	2	827.409321	1652.80409	-0.45344	-0.00037518	0.68345	0.00056549	0.23001	0.00019031	827.4099925826143	89.905	0.6064	89.905	89.628	90.235	0					33	11	4	0	0	0	0.73897	1	32965	32965		0.35063	0.043601	1	17576000	+		13804	20840	10051	10127	13441	13441					0.003798271250389007
EWVFHLKWWWH	11	Unmodified	_EWVFHLKWWWH_					0	0	0			REV__ENSG00000168282|ENST00000305386|MGAT2	REV__ENSG00000168282|ENST00000305386|MGAT2	MULTI-MATCH	A375_MHC_IP_R2	2		2	827.409321	1652.80409	-0.70398	-0.00058248	0.97826	0.00080942	0.27428	0.00022694	827.410200151665	89.263	0.90798	89.995	89.431	90.339	0.7318	0.044731	0.00028872	NaN	0.35063	47	17	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15391000	+		13805	20840	10051	10127							0.003798271250389007
EWYRRPKKRKT	11	Unmodified	_EWYRRPKKRKT_					0	0	0			REV__ENST00000477718.5_1_6:33256133-33256956:-|nuORF	REV__ENST00000477718.5_1_6:33256133-33256956:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	774.8482666015625	2	774.449508	1546.88446	-0.36961	-0.00028625	-0.73264	-0.00056739	-1.1023	-0.00085364	774.4489191801174	56.685	0.50836	56.685	56.447	56.956	0					30	9	5	0	0	0	1.0011	1	20283	20283		0.23584	0	1	19034000	+		13806	22727	10052	10128	13442	13442					0.13289688448026027
EWYRRPKKRKT	11	Unmodified	_EWYRRPKKRKT_					0	0	0			REV__ENST00000477718.5_1_6:33256133-33256956:-|nuORF	REV__ENST00000477718.5_1_6:33256133-33256956:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	774.848388671875	2	774.449508	1546.88446	-1.1227	-0.00086947	-0.43552	-0.00033729	-1.5582	-0.0012068	774.4491091309753	55.922	0.50989	56.672	56.438	56.948	0.75014					30	9	4	0	0	0	1.001	1	21113	21113		1.1933	0	1	18810000	+		13807	22727	10052	10128	13443	13443					0.13289688448026027
EYAGLYDDIST	11	Unmodified	_EYAGLYDDIST_					0	0	0		ENSG00000134121|ENST00000256509|CHL1;nc|ENSG00000134121|O00533|CHL1	ENSG00000134121|ENST00000256509|CHL1	ENSG00000134121|ENST00000256509|CHL1	MULTI-MSMS	A375_MHC_IP_R1	1	623.7079467773438	2	623.777333	1245.54011	-0.26682	-0.00016644	0.74178	0.00046271	0.47496	0.00029627	624.2785555342964	70.121	1.7823	70.121	69.377	71.159	0					62	34	2	0	0	0	0.62292	1	25633	25633		21.537	10.042	1	2834400			13808	4552	10053	10129	13444	13444					-0.07283517280848173
EYAGLYDDIST	11	Unmodified	_EYAGLYDDIST_					0	0	0		ENSG00000134121|ENST00000256509|CHL1;nc|ENSG00000134121|O00533|CHL1	ENSG00000134121|ENST00000256509|CHL1	ENSG00000134121|ENST00000256509|CHL1	MULTI-MSMS	A375_MHC_IP_R2	2	623.7091064453125	2	623.777333	1245.54011	-0.68489	-0.00042722	0.74276	0.00046332	0.05787	3.6098E-05	624.2785584209677	69.998	2.2323	70.732	69.12	71.352	0.73421					69	43	2	0	0	0	0.67989	1	26518	26518		17.113	3.2068	1	2289700			13809	4552	10053	10129	13445	13445					-0.07283517280848173
EYAKDLFQQRY	11	Unmodified	_EYAKDLFQQRY_					0	0	0		ENSG00000185352|ENST00000376705|HS6ST3	ENSG00000185352|ENST00000376705|HS6ST3	ENSG00000185352|ENST00000376705|HS6ST3	MSMS	A375_MHC_IP_R1	1	487.6431884765625	3	487.577136	1459.70958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.708	1	48.708	48.208	49.208	0								0	0	0	0.16182	1	17197	17197		9.2438	1.7667	1				13810	8661	10054	10130	13446	13446					-0.0018877620761941216
EYARYALLST	10	Unmodified	_EYARYALLST_					0	0	0			REV__nc|ENSG00000163946|Q9UK61-3|TASOR	REV__nc|ENSG00000163946|Q9UK61-3|TASOR	MSMS	A375_MHC_IP_R2	2	396.2607421875	3	396.208273	1185.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.299	1	41.073	40.573	41.573	0.77451								0	0	0	0.15397	1	14918	14918		7.9454	1.3219	1		+		13811	20429	10055	10131	13447	13447					0.017610932978641358
EYASKGELYN	10	Unmodified	_EYASKGELYN_					0	0	0		NUAK1|p.D142N|1|0.36|ENSG00000074590|chr12:106086823-106086823|C/T|missense_variant	NUAK1|p.D142N|1|0.36|ENSG00000074590|chr12:106086823-106086823|C/T|missense_variant	NUAK1|p.D142N|1|0.36|ENSG00000074590|chr12:106086823-106086823|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	587.2021484375	2	587.274761	1172.53497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.849	1	90.849	90.349	91.349	0								0	0	0	0.15038	1	33389	33389		17.113	0.96379	1				13812	15033	10056	10132	13448	13448					-0.04439776352774061
EYCDGPEAY	9	Unmodified	_EYCDGPEAY_					0	0	0			REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I	REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I	MSMS	A375_MHC_IP_R1	1	523.66064453125	2	523.692215	1045.36988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.632	1	61.632	61.132	62.132	0								0	0	0	0.15486	1	22230	22230		7.9102	2.1497	1		+		13813	17078	10057	10133	13449	13449					-0.15099331484111644
EYDEYSGYY	9	Unmodified	_EYDEYSGYY_					0	0	0		tr|U7T514|U7T514_FUSNUAbortiveinfectionprotein-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00270PE=4SV=1	tr|U7T514|U7T514_FUSNUAbortiveinfectionprotein-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00270PE=4SV=1	tr|U7T514|U7T514_FUSNUAbortiveinfectionprotein-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00270PE=4SV=1	MSMS	A375_MHC_IP_R2	2	594.65576171875	2	594.722027	1187.4295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.124	1	94.868	94.368	95.368	0.74474								0	0	0	0.15486	1	35774	35774		7.2892	1.0834	1				13814	30009	10058	10134	13450	13450					-0.15671737269076402
EYDLEMMTY	9	Unmodified	_EYDLEMMTY_					0	0	0			REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-MSMS	A375_MHC_IP_R1	1	598.1376342773438	2	597.738308	1193.46206	-0.15454	-9.2376E-05	-0.72359	-0.00043252	-0.87813	-0.00052489	598.239538704504	107.65	0.61221	107.65	107.39	108	0					30	11	4	0	0	0	0.65721	1	39490	39490		10.824	0.75	1	4421000	+		13815	16654	10059	10135	13451	13451					-0.12692989462061632
EYDLEMMTY	9	Unmodified	_EYDLEMMTY_					0	0	0			REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	597.738308	1193.46206	-0.15454	-9.2376E-05	-0.72359	-0.00043252	-0.87813	-0.00052489	598.239538704504	107.65	0.61221	107.65	107.39	108	0	-0.03482	0.00029634	NaN	10.824	30	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4421000	+		13816	16654	10059	10135							-0.12692989462061632
EYDRAENLH	9	Unmodified	_EYDRAENLH_					0	0	0			REV__ENST00000479309.6_1_2:169690730-169745796:-|nuORF	REV__ENST00000479309.6_1_2:169690730-169745796:-|nuORF	MSMS	A375_MHC_IP_R1	1	382.4824523925781	3	382.843993	1145.51015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.433	1	17.433	16.933	17.933	0								0	0	0	0.15486	1	4093	4093		0.23584	0	1		+		13817	19797	10060	10136	13452	13452					-0.056784114355195925
EYDYGYCI	8	Unmodified	_EYDYGYCI_					0	0	0		nc|ENSG00000203970|Q30KQ9-2|DEFB110	nc|ENSG00000203970|Q30KQ9-2|DEFB110	nc|ENSG00000203970|Q30KQ9-2|DEFB110	MULTI-MSMS	A375_MHC_IP_R1	1	1024.953125	1	1025.39208	1024.3848	0.46735	0.00047922	1.0284	0.0010545	1.4958	0.0015337	1025.3936421133865	48.209	0.65697	48.209	47.819	48.476	0					30	12	3	0	0	0	0.77603	1	16944	16944		9.3474	3.6156	1	9084400			13818	14854	10061	10137	13453	13453					-0.126418396161057
EYDYGYCI	8	Unmodified	_EYDYGYCI_					0	0	0		nc|ENSG00000203970|Q30KQ9-2|DEFB110	nc|ENSG00000203970|Q30KQ9-2|DEFB110	nc|ENSG00000203970|Q30KQ9-2|DEFB110	MULTI-MATCH	A375_MHC_IP_R2	2		1	1025.39208	1024.3848	0.20018	0.00020526	1.5075	0.0015458	1.7077	0.0017511	1025.393806605558	47.433	0.66407	48.195	47.867	48.532	0.76128	-0.0070054	0.00024489	NaN	9.3474	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11258000			13819	14854	10061	10137							-0.126418396161057
EYEDFQFY	8	Unmodified	_EYEDFQFY_					0	0	0			REV__tr|U7SSZ7|U7SSZ7_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01653PE=3SV=1	REV__tr|U7SSZ7|U7SSZ7_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01653PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	571.1304321289062	2	570.729655	1139.44476	-0.23279	-0.00013286	1.6538	0.00094388	1.421	0.00081102	570.7305559034246	88.502	0.45571	89.234	88.925	89.381	0.7318					16	8	3	0	0	0	0.74466	1	33700	33700		21.747	4.6338	1	1488000	+		13820	28453	10062	10138	13454	13454					-0.11938825681227172
EYEEFHFRRCF	11	Unmodified	_EYEEFHFRRCF_					0	0	0		ENST00000282030.5_1_18:42645023-42645323:+|nuORF	ENST00000282030.5_1_18:42645023-42645323:+|nuORF	ENST00000282030.5_1_18:42645023-42645323:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	522.14501953125	3	521.566354	1561.67723	-0.090027	-4.6955E-05	0.54191	0.00028264	0.45188	0.00023569	521.5667664017751	48.603	0.60749	48.603	48.325	48.933	0					44	11	6	0	0	0	1.0014	1	17043	17043		0.08335	0.08335	1	33011000			13821	10433	10063	10139	13455	13455					-0.08113886882279076
EYEMMRKFWRW	11	Unmodified	_EYEMMRKFWRW_					0	0	0		L1MB4_dup3225|chr7:20663211-20663687:+|1.1155096630173194|0.0508094464944072|4.46|407.0|14|2|sense	L1MB4_dup3225|chr7:20663211-20663687:+|1.1155096630173194|0.0508094464944072|4.46|407.0|14|2|sense	L1MB4_dup3225|chr7:20663211-20663687:+|1.1155096630173194|0.0508094464944072|4.46|407.0|14|2|sense	MSMS	A375_MHC_IP_R1	1	831.3351440429688	2	831.389413	1660.76427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.441	1	78.441	77.941	78.941	0								0	0	0	0.1636	1	28625	28625		0	0	1				13822	14254	10064	10140	13456	13456					-0.039678039322325276
EYEMMRKFWRW	11	Unmodified	_EYEMMRKFWRW_					0	0	0		L1MB4_dup3225|chr7:20663211-20663687:+|1.1155096630173194|0.0508094464944072|4.46|407.0|14|2|sense	L1MB4_dup3225|chr7:20663211-20663687:+|1.1155096630173194|0.0508094464944072|4.46|407.0|14|2|sense	L1MB4_dup3225|chr7:20663211-20663687:+|1.1155096630173194|0.0508094464944072|4.46|407.0|14|2|sense	MSMS	A375_MHC_IP_R2	2	831.3900756835938	2	831.389413	1660.76427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.897	1	92.633	92.133	93.133	0.73685								0	0	0	0.16354	1	34949	34949		0.30703	0.30703	1				13823	14254	10064	10140	13457	13457					-0.039678039322325276
EYEVPNSYSLP	11	Unmodified	_EYEVPNSYSLP_					0	0	0			REV__ENSG00000186675|ENST00000373359|MAGEE2	REV__ENSG00000186675|ENST00000373359|MAGEE2	MSMS	A375_MHC_IP_R2	2	433.2852478027344	3	433.203076	1296.5874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.415	1	58.164	57.664	58.664	0.74894								0	0	0	0.16249	1	21711	21711		2.6312	1.4164	1		+		13824	21982	10065	10141	13458	13458					-0.04903238009865163
EYFKINYPRYF	11	Unmodified	_EYFKINYPRYF_					0	0	0			REV__ENSG00000122254|ENST00000261374|HS3ST2	REV__ENSG00000122254|ENST00000261374|HS3ST2	MULTI-SECPEP	A375_MHC_IP_R2	2	513.20556640625	3	513.925877	1538.7558	-0.68005	-0.00034949	-1.9955	-0.0010255	-2.6755	-0.001375	514.2588505626272	78.929	0.3069	79.674	79.489	79.796	0.74473					6	5	2	0	0	0	0.99945	1	29959	29959		2.2527	1.3272	1	818970	+		13825	18197	10066	10142	13459	13459					0.007972886944344282
EYFNEYCEIRR	11	Unmodified	_EYFNEYCEIRR_					0	0	0			REV__PFKFB4|p.S201F|1|0.53|ENSG00000114268|chr3:48538528-48538528|G/A|missense_variant	REV__PFKFB4|p.S201F|1|0.53|ENSG00000114268|chr3:48538528-48538528|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	507.9800109863281	3	507.897881	1520.67181	-0.69685	-0.00035393	-0.86668	-0.00044018	-1.5635	-0.00079411	507.8976469090749	63.019	0.45613	63.762	63.584	64.04	0.74263					15	8	2	0	0	0	0.73886	1	23844	23844		0.45452	0	1	1775300	+		13826	27767	10067	10143	13460	13460					-0.06769610464766629
EYFQKYGY	8	Unmodified	_EYFQKYGY_					0	0	0		ENST00000475251.1_1_13:21746457-21750586:-|nuORF;nc|ENSG00000165480|Q8IX90-3|SKA3;ENST00000298260.8_1_13:21729833-21750660:-|nuORF;ENSG00000165480|ENST00000314759|SKA3	ENST00000475251.1_1_13:21746457-21750586:-|nuORF	ENST00000475251.1_1_13:21746457-21750586:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	549.648681640625	2	549.250557	1096.48656	-0.55093	-0.0003026	-2.8563	-0.0015688	-3.4072	-0.0018714	549.2486441192165	79.844	0.56441	79.844	79.47	80.034	0					16	10	2	0	0	0	0.71451	1	29158	29158		30.225	9.7712	1	1396100			13827	6958	10068	10144	13461	13461					-0.0578222520205145
EYGGPDRRCP	10	Unmodified	_EYGGPDRRCP_					0	0	0		ENSG00000150457|ENST00000382592|LATS2	ENSG00000150457|ENST00000382592|LATS2	ENSG00000150457|ENST00000382592|LATS2	MULTI-MSMS	A375_MHC_IP_R2	2	576.2022094726562	2	575.258922	1148.50329	-0.11352	-6.5306E-05	-0.4717	-0.00027135	-0.58522	-0.00033666	575.2586981896619	92.173	1.9239	92.912	92.483	94.407	0.73902					93	37	4	0	0	0	0.69833	1	35222	35222		13.042	1.4022	1	43945000			13828	5844	10069	10145	13462	13462					-0.065020475877418
EYHRSDAVFFT	11	Unmodified	_EYHRSDAVFFT_					0	0	0		ENST00000581229.5_1_17:27117407-27169789:-|nuORF	ENST00000581229.5_1_17:27117407-27169789:-|nuORF	ENST00000581229.5_1_17:27117407-27169789:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	458.28240966796875	3	457.882448	1370.62551	-0.30226	-0.0001384	0.10932	5.0057E-05	-0.19293	-8.8341E-05	457.88242786748964	24.725	0.65582	24.725	24.397	25.053	0					30	12	4	0	0	0	0.99548	1	6937	6937		5.8681	1.9918	1	29071000			13829	13679	10070	10146	13463	13463					-0.04497307304563947
EYIFLAAG	8	Unmodified	_EYIFLAAG_					0	0	0		DDX3Y|p.V403A|1|0.97|ENSG00000067048|chrY:12915926-12915926|T/C|missense_variant	DDX3Y|p.V403A|1|0.97|ENSG00000067048|chrY:12915926-12915926|T/C|missense_variant	DDX3Y|p.V403A|1|0.97|ENSG00000067048|chrY:12915926-12915926|T/C|missense_variant	MSMS	A375_MHC_IP_R1	1	442.2982482910156	2	442.231636	882.448719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.869	1	34.869	34.369	35.369	0								0	0	0	0.16876	1	11538	11538		10.183	1.5901	1				13830	728	10071	10147	13464	13464					0.002793086031488201
EYIGRKKISP	10	Unmodified	_EYIGRKKISP_					0	0	0		ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1;ENST00000517412.1_1_5:67522458-67569396:+|nuORF	ENSG00000145675|ENST00000521381|PIK3R1	ENSG00000145675|ENST00000521381|PIK3R1	MULTI-SECPEP	A375_MHC_IP_R2	2	396.8609619140625	3	397.567912	1189.68191	-0.12147	-4.8292E-05	-1.0771	-0.00042821	-1.1985	-0.0004765	397.5673165256927	31.538	0.25604	32.257	32.026	32.282	0.71857					5	4	2	0	0	0	0.93873	1	11077	11077		7.9454	5.2102	1	981380			13831	5569	10072	10148	13465	13465					0.09465365322807884
EYKKEKHEHAV	11	Unmodified	_EYKKEKHEHAV_					0	0	0			REV__nc|ENSG00000111581|P57740-3|NUP107	REV__nc|ENSG00000111581|P57740-3|NUP107	MULTI-SECPEP	A375_MHC_IP_R2	2	467.15264892578125	3	466.577247	1396.70991	-1.0913	-0.00050917	-0.58219	-0.00027164	-1.6735	-0.00078081	466.57693688989923	25.559	0.30349	26.219	25.992	26.296	0.65992					9	5	2	0	0	0	0.99681	1	8490	8490		1.1098	0	1	1751500	+		13832	17677	10073	10149	13466	13466					0.02742643512237919
EYKMLLDIKTR	11	Unmodified	_EYKMLLDIKTR_					0	0	0		CON__P08730-1;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-3|KRT13;CON__ENSEMBL:ENSP00000377550;ENSG00000171401|ENST00000246635|KRT13;CON__P13646-1;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;ENSG00000171346|ENST00000254043|KRT15;CON__P19012	CON__P08730-1;nc|ENSG00000171346|P19012-2|KRT15	nc|ENSG00000171346|P19012-2|KRT15	MULTI-MSMS	A375_MHC_IP_R2	2	705.7939453125	2	705.394687	1408.77482	-0.65754	-0.00046383	1.2483	0.00088057	0.5908	0.00041674	705.3954952770621	88.432	0.3547	89.164	89.026	89.381	0.7318					12	6	2	0	0	0	0.73238	1	33681	33681		6.6304	0.43853	1	2153700		+	13833	594;597	10074	10150	13467	13467					0.08678501993836107
EYKMLLDIKTR	11	Unmodified	_EYKMLLDIKTR_					0	0	0		CON__P08730-1;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-3|KRT13;CON__ENSEMBL:ENSP00000377550;ENSG00000171401|ENST00000246635|KRT13;CON__P13646-1;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;ENSG00000171346|ENST00000254043|KRT15;CON__P19012	CON__P08730-1;nc|ENSG00000171346|P19012-2|KRT15	nc|ENSG00000171346|P19012-2|KRT15	MULTI-MATCH	A375_MHC_IP_R1	1		2	705.394687	1408.77482	-0.54734	-0.00038609	1.6222	0.0011443	1.0749	0.0007582	705.3955268719295	89.272	0.30583	89.272	89.069	89.375	0	0.05421	0.00040211	NaN	6.6304	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	907360		+	13834	594;597	10074	10150							0.08678501993836107
EYKNAERRTWE	11	Unmodified	_EYKNAERRTWE_					0	0	0		ENST00000535069.5_1_12:10583733-10588406:-|nuORF	ENST00000535069.5_1_12:10583733-10588406:-|nuORF	ENST00000535069.5_1_12:10583733-10588406:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	494.97515869140625	3	494.575907	1480.70589	-0.76002	-0.00037589	-1.006	-0.00049754	-1.766	-0.00087343	494.5754516485305	19.105	0.35178	19.708	19.583	19.935	0.60308					10	6	2	0	0	0	0.72909	1	5863	5863		9.7643	2.7272	1	5570200			13835	13221	10075	10151	13468	13468					-0.015234459815246737
EYLAFLGNL	9	Unmodified	_EYLAFLGNL_					0	0	0		nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3;ENST00000551901.5_1_16:21823661-21831677:-|nuORF;ENST00000566038.1_1_16:29086353-29102074:+|nuORF;nc|ENSG00000085721|Q9NYV6-2|RRN3;nc|ENSG00000103472|A6NIE6|RRN3P2;ENST00000564580.5_1_16:29086353-29108616:+|nuORF;ENST00000427965.6_1_16:29086353-29124388:+|nuORF	nc|ENSG00000085721|Q9NYV6-3|RRN3	nc|ENSG00000085721|Q9NYV6-3|RRN3	MSMS	A375_MHC_IP_R2	2	520.3208618164062	2	520.276575	1038.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.33	1	104.09	103.59	104.59	0.76428								0	0	0	0.15486	1	39135	39135		8.5933	0.68312	1				13836	1817	10076	10152	13469	13469					0.020869382117098212
EYLDADEQQF	10	Unmodified	_EYLDADEQQF_					0	0	0			REV__CNTN4|p.G291D|1|0.24|ENSG00000144619|chr3:2887156-2887156|G/A|missense_variant	REV__CNTN4|p.G291D|1|0.24|ENSG00000144619|chr3:2887156-2887156|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	630.167724609375	2	629.267133	1256.51971	-0.99594	-0.00062671	-0.66029	-0.0004155	-1.6562	-0.0010422	629.2666687672148	29.734	0.49392	29.734	29.555	30.049	0					22	9	3	0	0	0	0.55789	1	9356	9356		24.021	6.9077	1	25962000	+		13837	15815	10077	10153	13470	13470					-0.09828687940694181
EYLDADEQQF	10	Unmodified	_EYLDADEQQF_					0	0	0			REV__CNTN4|p.G291D|1|0.24|ENSG00000144619|chr3:2887156-2887156|G/A|missense_variant	REV__CNTN4|p.G291D|1|0.24|ENSG00000144619|chr3:2887156-2887156|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	629.833984375	2	629.267133	1256.51971	-0.99594	-0.00062671	-0.66029	-0.0004155	-1.6562	-0.0010422	629.2666687672148	29.734	0.49392	29.734	29.555	30.049	0					22	9	3	0	0	0	0.8528	1	9480	9480		21.537	13.928	1	25962000	+		13838	15815	10077	10153	13471	13471					-0.09828687940694181
EYLDADEQQF	10	Unmodified	_EYLDADEQQF_					0	0	0			REV__CNTN4|p.G291D|1|0.24|ENSG00000144619|chr3:2887156-2887156|G/A|missense_variant	REV__CNTN4|p.G291D|1|0.24|ENSG00000144619|chr3:2887156-2887156|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	629.66552734375	2	629.267133	1256.51971	-1.6869	-0.0010615	-0.52186	-0.00032839	-2.2087	-0.0013899	629.2668393084015	29.131	0.60151	29.83	29.634	30.236	0.69872					24	11	3	0	0	0	0.39599	1	10144	10144		34.402	13.987	1	17353000	+		13839	15815	10077	10153	13472	13472					-0.09828687940694181
EYLDADEQQF	10	Unmodified	_EYLDADEQQF_					0	0	0			REV__CNTN4|p.G291D|1|0.24|ENSG00000144619|chr3:2887156-2887156|G/A|missense_variant	REV__CNTN4|p.G291D|1|0.24|ENSG00000144619|chr3:2887156-2887156|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	629.267133	1256.51971	-1.6869	-0.0010615	-0.52186	-0.00032839	-2.2087	-0.0013899	629.2668393084015	29.131	0.60151	29.83	29.634	30.236	0.69872	0.047966	9.103E-05	NaN	34.402	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17353000	+		13840	15815	10077	10153							-0.09828687940694181
EYLERGQY	8	Unmodified	_EYLERGQY_					0	0	0			REV__ENSG00000136286|ENST00000258787|MYO1G	REV__ENSG00000136286|ENST00000258787|MYO1G	MSMS	A375_MHC_IP_R1	1	529.1593627929688	2	529.251089	1056.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.763	1	61.763	61.263	62.263	0								0	0	0	0.16876	1	22283	22283		13.508	0.97634	1		+		13841	18929	10078	10154	13473	13473					-0.038360108331289666
EYLHSKSL	8	Unmodified	_EYLHSKSL_					0	0	0			REV__ENSG00000139618|ENST00000380152|BRCA2	REV__ENSG00000139618|ENST00000380152|BRCA2	MSMS	A375_MHC_IP_R2	2	488.6844787597656	2	488.758549	975.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.115	1	32.852	32.352	33.352	0.73692								0	0	0	0.16876	1	11396	11396		26.884	2.8631	1		+		13842	19166	10079	10155	13474	13474					0.013814810348662832
EYLSQEEY	8	Unmodified	_EYLSQEEY_					0	0	0		ENST00000575500.5_2_17:78178032-78182141:+|nuORF;ENSG00000141527|ENST00000648509|CARD14	ENST00000575500.5_2_17:78178032-78182141:+|nuORF	ENST00000575500.5_2_17:78178032-78182141:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	531.2313842773438	2	530.727112	1059.43967	-0.60103	-0.00031898	-0.82616	-0.00043847	-1.4272	-0.00075745	530.7256477421444	64.045	0.60761	64.045	63.939	64.546	0					16	11	2	0	0	0	0.70783	1	23342	23342		32.305	0	1	1212900			13843	5250	10080	10156	13475	13475					-0.08767129543844021
EYPDRIMNTF	10	Unmodified	_EYPDRIMNTF_					0	0	0		ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3;chr16:89921431-89932571|440|11.67|0.7|4.06|+|ENST00000555810|TUBB3,TUBB3	ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;nc|ENSG00000258947|Q13509-2|TUBB3	nc|ENSG00000258947|Q13509-2|TUBB3	MULTI-SECPEP	A375_MHC_IP_R2	2	643.0864868164062	2	643.297713	1284.58087	-0.71286	-0.00045858	0.67237	0.00043253	-0.040495	-2.605E-05	643.2975337591322	77.2	0.40591	77.943	77.707	78.113	0.74293					16	7	3	0	0	0	0.81532	1	29302	29302		24.991	11.376	1	1531100			13844	9924;9016;4872	10081	10157	13476	13476					-0.050034544422260296
EYQNTKHHW	9	Unmodified	_EYQNTKHHW_					0	0	0		ENSG00000156140|ENST00000286657|ADAMTS3	ENSG00000156140|ENST00000286657|ADAMTS3	ENSG00000156140|ENST00000286657|ADAMTS3	MULTI-SECPEP	A375_MHC_IP_R1	1	622.1847534179688	2	621.786161	1241.55777	-0.49287	-0.00030646	-0.86615	-0.00053856	-1.359	-0.00084502	621.7855656458153	50.386	0.61102	50.386	50.153	50.764	0					28	11	4	0	0	0	0.57304	1	17844	17844		25.399	25.399	1	6760800			13845	6177	10082	10158	13477	13477					-0.053347124446645466
EYRAVVVDQP	10	Unmodified	_EYRAVVVDQP_					0	0	0			REV__nc|ENSG00000112655|Q13308-3|PTK7	REV__nc|ENSG00000112655|Q13308-3|PTK7	MSMS	A375_MHC_IP_R2	2	392.58184814453125	3	392.540022	1174.59824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.918	1	61.663	61.163	62.163	0.74503								0	0	0	0.15372	1	23075	23075		5.0475	1.2016	1		+		13846	17744	10083	10159	13478	13478					0.01792209155087221
EYRENEELQEH	11	Unmodified	_EYRENEELQEH_					0	0	0			REV__GRIA3|p.G447E|3|0.47|ENSG00000125675|chrX:123404754-123404754|G/A|missense_variant	REV__GRIA3|p.G447E|3|0.47|ENSG00000125675|chrX:123404754-123404754|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	492.4509582519531	3	492.551427	1474.63245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.559	1	31.559	31.059	32.059	0								0	0	0	0.1635	1	10113	10113		0.50596	0.051438	1		+		13847	26706	10084	10160	13479	13479					-0.0858803921460094
EYRHVRRRRRL	11	Unmodified	_EYRHVRRRRRL_					0	0	0			REV__ENSG00000112996|ENST00000507110|MRPS30	REV__ENSG00000112996|ENST00000507110|MRPS30	MULTI-SECPEP	A375_MHC_IP_R1	1	533.405517578125	3	532.985457	1595.93454	-0.99652	-0.00053113	-0.39928	-0.00021281	-1.3958	-0.00074394	532.9850762621285	148.94	1.8334	148.94	147.8	149.63	0					83	41	3	0	0	0	1.0015	1	56920	56920		0.094841	0.094841	1	539340	+		13848	17764	10085	10161	13480	13480					0.1604123589656865
EYRKIYVLDI	10	Unmodified	_EYRKIYVLDI_					0	0	0			REV__STARD6|p.G122E|1|0.2|ENSG00000174448|chr18:54331762-54331762|C/T|missense_variant	REV__STARD6|p.G122E|1|0.2|ENSG00000174448|chr18:54331762-54331762|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	438.6496887207031	3	437.915089	1310.72344	-0.35748	-0.00015655	1.3925	0.00060978	1.035	0.00045323	437.91592632588987	38.417	0.61186	38.417	38.067	38.679	0					16	11	2	0	0	0	0.70793	1	13063	13063		5.0475	0.3316	1	3275100	+		13849	21284	10086	10162	13481	13481					0.08050501291472756
EYRLRLLGW	9	Unmodified	_EYRLRLLGW_					0	0	0			REV__nc|ENSG00000011143|Q9NXB0-2|MKS1	REV__nc|ENSG00000011143|Q9NXB0-2|MKS1	MULTI-SECPEP	A375_MHC_IP_R2	2	602.6964721679688	2	603.343115	1204.67168	-0.62582	-0.00037759	-0.049858	-3.0081E-05	-0.67568	-0.00040767	603.3430425931654	66.215	0.71472	66.953	66.629	67.343	0.73812					29	13	3	0	0	0	0.76187	1	25218	25218		11.64	4.9171	1	4483300	+		13850	27092	10087	10163	13482	13482					0.07752802388222335
EYSIHLGSGLI	11	Unmodified	_EYSIHLGSGLI_					0	0	0		tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	397.2803649902344	3	396.880156	1187.61864	-0.20642	-8.1923E-05	0.88096	0.00034963	0.67454	0.00026771	396.8804365001986	36.971	0.55568	36.971	36.745	37.301	0					20	10	3	0	0	0	0.67989	1	12451	12451		9.7643	0	1	4327000			13851	29892	10088	10164	13483	13483					0.032333798149238646
EYSIYYYEYIY	11	Unmodified	_EYSIYYYEYIY_					0	0	0		tr|U7T452|U7T452_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00257PE=4SV=1	tr|U7T452|U7T452_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00257PE=4SV=1	tr|U7T452|U7T452_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00257PE=4SV=1	MSMS	A375_MHC_IP_R1	1	523.6254272460938	3	523.565903	1567.67588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.391	1	35.391	34.891	35.891	0								0	0	0	0.16309	1	11769	11769		2.6312	0	1				13852	29993	10089	10165	13484	13484					-0.08525242490031815
EYSWPAWLE	9	Unmodified	_EYSWPAWLE_					0	0	0			REV__ENST00000591607.1_1_19:45593773-45593926:+|nuORF	REV__ENST00000591607.1_1_19:45593773-45593926:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	591.1690063476562	2	590.769114	1179.52368	-0.4726	-0.0002792	-0.32445	-0.00019167	-0.79705	-0.00047087	590.7690555336969	69.393	0.81297	70.127	69.778	70.591	0.73421					23	15	2	0	0	0	0.29123	1	26316	26316		42.095	13.013	1	1400300	+		13853	26446	10090	10166	13485	13485					-0.05890553656308839
EYSYKQEKKI	10	Unmodified	_EYSYKQEKKI_					0	0	0		nc|ENSG00000085511|Q9Y6R4-2|MAP3K4;ENSG00000085511|ENST00000392142|MAP3K4	nc|ENSG00000085511|Q9Y6R4-2|MAP3K4	nc|ENSG00000085511|Q9Y6R4-2|MAP3K4	MULTI-SECPEP	A375_MHC_IP_R2	2	438.9300537109375	3	439.234599	1314.68197	-0.27382	-0.00012027	-0.34621	-0.00015207	-0.62003	-0.00027234	439.23421409487185	27.469	0.81176	28.148	27.843	28.655	0.67857					37	15	3	0	0	0	0.94269	1	9615	9615		3.3196	3.3196	1	10435000			13854	1815	10091	10167	13486	13486					0.03721320532122263
EYTEAEAEEL	10	Unmodified	_EYTEAEAEEL_					0	0	0		nc|ENSG00000135913|Q86T82-2|USP37;ENSG00000135913|ENST00000258399|USP37	nc|ENSG00000135913|Q86T82-2|USP37	nc|ENSG00000135913|Q86T82-2|USP37	MULTI-SECPEP	A375_MHC_IP_R2	2	591.5132446289062	2	592.253691	1182.49283	-0.49191	-0.00029133	-2.242	-0.0013279	-2.7339	-0.0016192	592.2518929761119	88.872	0.55705	89.604	89.279	89.836	0.7318					16	10	2	0	0	0	0.9269	1	33894	33894		3.5965	0.31518	1	1748700			13855	4726	10092	10168	13487	13487					-0.0911179655183787
EYTLMVVTF	9	Unmodified	_EYTLMVVTF_					0	0	0			REV__ENSG00000012232|ENST00000220562|EXTL3	REV__ENSG00000012232|ENST00000220562|EXTL3	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2134399414062	2	551.778093	1101.54163	-0.69061	-0.00038107	-1.5334	-0.00084611	-2.224	-0.0012272	552.2790027991923	80.452	0.20287	80.452	80.289	80.492	0					5	3	2	0	0	0	0.73363	1	29391	29391		15.847	3.3156	1	891860	+		13856	16223	10093	10169	13488	13488					-0.005075547257774815
EYTMISWRDLM	11	Unmodified	_EYTMISWRDLM_					0	0	0			REV__nc|ENSG00000102780|Q86XP1-2|DGKH	REV__nc|ENSG00000102780|Q86XP1-2|DGKH	MULTI-MSMS	A375_MHC_IP_R1	1	723.2327880859375	2	722.833605	1443.65266	-0.73738	-0.000533	-0.33252	-0.00024036	-1.0699	-0.00077336	722.8334387799081	52.86	0.45603	52.86	52.643	53.099	0					16	8	3	0	0	0	0.72728	1	18839	18839		11.495	3.3392	1	3318600	+		13857	17231	10094	10170	13489	13489					-0.051422830800220254
EYTMISWRDLM	11	Unmodified	_EYTMISWRDLM_					0	0	0			REV__nc|ENSG00000102780|Q86XP1-2|DGKH	REV__nc|ENSG00000102780|Q86XP1-2|DGKH	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	722.833605	1443.65266	-0.73738	-0.000533	-0.33252	-0.00024036	-1.0699	-0.00077336	722.8334387799081	52.86	0.45603	52.86	52.643	53.099	0	-0.098864	-6.1608E-05	NaN	11.495	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3318600	+		13858	17231	10094	10170							-0.051422830800220254
EYTMISWRDLM	11	Unmodified	_EYTMISWRDLM_					0	0	0			REV__nc|ENSG00000102780|Q86XP1-2|DGKH	REV__nc|ENSG00000102780|Q86XP1-2|DGKH	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	722.833605	1443.65266	-1.1873	-0.00085821	-0.22475	-0.00016245	-1.412	-0.0010207	722.8334980983193	52.305	0.35249	53.057	52.932	53.285	0.75225	0.098864	9.4201E-05	NaN	11.495	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3069600	+		13859	17231	10094	10170							-0.051422830800220254
EYTNPEDGVTY	11	Unmodified	_EYTNPEDGVTY_					0	0	0		nc|ENSG00000140876|P0C024-2|NUDT7;ENSG00000140876|ENST00000268533|NUDT7;ENST00000564085.5_1_16:77769737-77775844:+|nuORF	nc|ENSG00000140876|P0C024-2|NUDT7	nc|ENSG00000140876|P0C024-2|NUDT7	MULTI-MSMS	A375_MHC_IP_R1	1	644.7080688476562	2	644.272415	1286.53028	-0.34951	-0.00022518	-0.053311	-3.4347E-05	-0.40282	-0.00025952	644.2723367274002	43.427	1.376	43.427	42.942	44.318	0					81	26	5	0	0	0	0.63737	1	15317	15317		20.415	4.2654	1	100740000			13860	5192	10095	10171	13490	13490					-0.10152705286213859
EYTVLPDRV	9	Unmodified	_EYTVLPDRV_					0	0	0			REV__ENST00000476457.5_1_1:32739930-32740685:+|nuORF	REV__ENST00000476457.5_1_1:32739930-32740685:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6455688476562	2	546.290214	1090.56587	-0.60468	-0.00033033	0.77085	0.00042111	0.16618	9.078E-05	546.2905588121309	94.166	0.50399	94.166	93.89	94.394	0					12	9	2	0	0	0	0.65527	1	34568	34568		17.113	4.0704	1	747700	+		13861	21712	10096	10172	13491	13491					0.02421421752092101
EYTYFIELEEQ	11	Unmodified	_EYTYFIELEEQ_					0	0	0		ENST00000532461.5_1_11:110102596-110108435:-|nuORF	ENST00000532461.5_1_11:110102596-110108435:-|nuORF	ENST00000532461.5_1_11:110102596-110108435:-|nuORF	MSMS	A375_MHC_IP_R1	1	732.7338256835938	2	732.332472	1462.65039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.842	1	26.842	26.342	27.342	0								0	0	0	0.16265	1	8060	8060		4.897	2.1618	1				13862	13184	10097	10173	13492	13492					-0.062427170124692566
EYVKGVPLIKY	11	Unmodified	_EYVKGVPLIKY_					0	0	0		ENSG00000261052|ENST00000338971|SULT1A3;ENSG00000213648|ENST00000360423|SULT1A4;ENSG00000197165|ENST00000335715|SULT1A2;ENSG00000196502|ENST00000314752|SULT1A1;nc|ENSG00000261052|P0DMM9-3|SULT1A3;ENST00000567998.5_1_16:28620023-28620143:-|nuORF;ENST00000569409.1_1_16:30212049-30212202:+|nuORF;ENST00000561824.5_1_16:30212049-30214087:+|nuORF;nc|ENSG00000261052|P0DMM9-2|SULT1A3;ENST00000569959.5_1_16:30212049-30214229:+|nuORF	ENSG00000261052|ENST00000338971|SULT1A3	ENSG00000261052|ENST00000338971|SULT1A3	MULTI-SECPEP	A375_MHC_IP_R1	1	655.2818603515625	2	654.881739	1307.74892	-0.7293	-0.0004776	0.58997	0.00038636	-0.13933	-9.1246E-05	654.8820756039589	67.244	0.51212	67.244	66.887	67.399	0					17	9	3	0	0	0	0.99606	1	24348	24348		3.2813	0	1	2482200			13863	9049	10098	10174	13493	13493					0.10735975813895493
EYVKGVPLIKY	11	Unmodified	_EYVKGVPLIKY_					0	0	0		ENSG00000261052|ENST00000338971|SULT1A3;ENSG00000213648|ENST00000360423|SULT1A4;ENSG00000197165|ENST00000335715|SULT1A2;ENSG00000196502|ENST00000314752|SULT1A1;nc|ENSG00000261052|P0DMM9-3|SULT1A3;ENST00000567998.5_1_16:28620023-28620143:-|nuORF;ENST00000569409.1_1_16:30212049-30212202:+|nuORF;ENST00000561824.5_1_16:30212049-30214087:+|nuORF;nc|ENSG00000261052|P0DMM9-2|SULT1A3;ENST00000569959.5_1_16:30212049-30214229:+|nuORF	ENSG00000261052|ENST00000338971|SULT1A3	ENSG00000261052|ENST00000338971|SULT1A3	MULTI-SECPEP	A375_MHC_IP_R2	2	654.6880493164062	2	654.881739	1307.74892	-0.97814	-0.00064057	0.54907	0.00035958	-0.42907	-0.00028099	654.8818966858802	66.427	0.41006	67.163	66.983	67.393	0.73631					16	7	3	0	0	0	0.99606	1	25210	25210		3.2813	2.319	1	3639900			13864	9049	10098	10174	13494	13494					0.10735975813895493
EYYEVQRNEFE	11	Unmodified	_EYYEVQRNEFE_					0	0	0		GRP|p.E92V|1|0.34|ENSG00000165623|chr18:59225627-59225627|A/T|missense_variant	GRP|p.E92V|1|0.34|ENSG00000165623|chr18:59225627-59225627|A/T|missense_variant	GRP|p.E92V|1|0.34|ENSG00000165623|chr18:59225627-59225627|A/T|missense_variant	MSMS	A375_MHC_IP_R1	1	502.45367431640625	3	502.556289	1504.64704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.607	1	27.607	27.107	28.107	0								0	0	0	0.16313	1	8400	8400		2.4348	0	1				13865	14092	10099	10175	13495	13495					-0.08509967066447643
EYYPYKYYY	9	Unmodified	_EYYPYKYYY_					0	0	0			REV__COL5A1|p.E276K|4|0.42|ENSG00000130635|chr9:134728709-134728709|G/A|missense_variant	REV__COL5A1|p.E276K|4|0.42|ENSG00000130635|chr9:134728709-134728709|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	676.4868774414062	2	676.297704	1350.58086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.22	1	51.972	51.472	52.472	0.75225								0	0	0	0.15486	1	19273	19273		2.0598	0.40713	1		+		13866	15829	10100	10176	13496	13496					-0.08041131170557492
FAAKRSGV	8	Unmodified	_FAAKRSGV_					0	0	0			REV__WNT7A|p.E103K|1|0.27|ENSG00000154764|chr3:13854795-13854795|C/T|missense_variant	REV__WNT7A|p.E103K|1|0.27|ENSG00000154764|chr3:13854795-13854795|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	418.28759765625	2	418.24287	834.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.928	1	56.678	56.178	57.178	0.75015								0	0	0	0.16876	1	21133	21133		8.5933	0	1		+		13867	28999	10101	10177	13497	13497					0.047329527914257596
FAAPSTDSDQG	11	Unmodified	_FAAPSTDSDQG_					0	0	0		nc|ENSG00000275954|A6NER0|TBC1D3F;ENSG00000278599|ENST00000621587|TBC1D3E;ENSG00000278299|ENST00000622206|TBC1D3C;ENSG00000274933|ENST00000621034|TBC1D3I;ENSG00000274808|ENST00000611257|TBC1D3B;ENSG00000274611|ENST00000620215|TBC1D3;ENSG00000274512|ENST00000612727|TBC1D3L;ENSG00000274419|ENST00000616101|TBC1D3D;ENSG00000274226|ENST00000610350|TBC1D3H;ENSG00000273513|ENST00000620247|TBC1D3K;ENSG00000260287|ENST00000569055|TBC1D3G	nc|ENSG00000275954|A6NER0|TBC1D3F	nc|ENSG00000275954|A6NER0|TBC1D3F	MULTI-MSMS	A375_MHC_IP_R1	1	548.633056640625	2	548.233093	1094.45163	-0.30882	-0.00016931	-0.28809	-0.00015794	-0.59692	-0.00032725	548.2328770981105	71.891	0.70612	71.891	71.615	72.321	0					36	13	4	0	0	0	0.72649	1	26089	26089		12.241	12.241	1	23182000			13868	9930	10102	10178	13498	13498					-0.09181512800682867
FAAPSTDSDQG	11	Unmodified	_FAAPSTDSDQG_					0	0	0		nc|ENSG00000275954|A6NER0|TBC1D3F;ENSG00000278599|ENST00000621587|TBC1D3E;ENSG00000278299|ENST00000622206|TBC1D3C;ENSG00000274933|ENST00000621034|TBC1D3I;ENSG00000274808|ENST00000611257|TBC1D3B;ENSG00000274611|ENST00000620215|TBC1D3;ENSG00000274512|ENST00000612727|TBC1D3L;ENSG00000274419|ENST00000616101|TBC1D3D;ENSG00000274226|ENST00000610350|TBC1D3H;ENSG00000273513|ENST00000620247|TBC1D3K;ENSG00000260287|ENST00000569055|TBC1D3G	nc|ENSG00000275954|A6NER0|TBC1D3F	nc|ENSG00000275954|A6NER0|TBC1D3F	MULTI-MSMS	A375_MHC_IP_R2	2	548.6323852539062	2	548.233093	1094.45163	-1.0062	-0.00055161	-0.18199	-9.9774E-05	-1.1881	-0.00065138	548.2329660470913	71.319	0.86029	72.053	71.656	72.516	0.73421					42	16	4	0	0	0	0.72649	1	26973	26973		12.241	12.241	1	18827000			13869	9930	10102	10178	13499	13499					-0.09181512800682867
FAAPSTDSDQG	11	Unmodified	_FAAPSTDSDQG_					0	0	0		nc|ENSG00000275954|A6NER0|TBC1D3F;ENSG00000278599|ENST00000621587|TBC1D3E;ENSG00000278299|ENST00000622206|TBC1D3C;ENSG00000274933|ENST00000621034|TBC1D3I;ENSG00000274808|ENST00000611257|TBC1D3B;ENSG00000274611|ENST00000620215|TBC1D3;ENSG00000274512|ENST00000612727|TBC1D3L;ENSG00000274419|ENST00000616101|TBC1D3D;ENSG00000274226|ENST00000610350|TBC1D3H;ENSG00000273513|ENST00000620247|TBC1D3K;ENSG00000260287|ENST00000569055|TBC1D3G	nc|ENSG00000275954|A6NER0|TBC1D3F	nc|ENSG00000275954|A6NER0|TBC1D3F	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	548.233093	1094.45163	-0.30882	-0.00016931	-0.28809	-0.00015794	-0.59692	-0.00032725	548.2328770981105	71.891	0.70612	71.891	71.615	72.321	0	-0.080676	-6.7896E-05	NaN	12.241	36	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23182000			13870	9930	10102	10178							-0.09181512800682867
FAAPSTDSDQG	11	Unmodified	_FAAPSTDSDQG_					0	0	0		nc|ENSG00000275954|A6NER0|TBC1D3F;ENSG00000278599|ENST00000621587|TBC1D3E;ENSG00000278299|ENST00000622206|TBC1D3C;ENSG00000274933|ENST00000621034|TBC1D3I;ENSG00000274808|ENST00000611257|TBC1D3B;ENSG00000274611|ENST00000620215|TBC1D3;ENSG00000274512|ENST00000612727|TBC1D3L;ENSG00000274419|ENST00000616101|TBC1D3D;ENSG00000274226|ENST00000610350|TBC1D3H;ENSG00000273513|ENST00000620247|TBC1D3K;ENSG00000260287|ENST00000569055|TBC1D3G	nc|ENSG00000275954|A6NER0|TBC1D3F	nc|ENSG00000275954|A6NER0|TBC1D3F	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	548.233093	1094.45163	-1.0062	-0.00055161	-0.18199	-9.9774E-05	-1.1881	-0.00065138	548.2329660470913	71.319	0.86029	72.053	71.656	72.516	0.73421	0.080676	4.8438E-05	NaN	12.241	42	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18827000			13871	9930	10102	10178							-0.09181512800682867
FAATHSLEF	9	Unmodified	_FAATHSLEF_					0	0	0		ENST00000560192.5_1_15:91447248-91454469:+|nuORF;nc|ENSG00000196547|P49641-2|MAN2A2;nc|ENSG00000196547|P49641-1|MAN2A2;ENSG00000196547|ENST00000559717|MAN2A2;ENST00000558640.5_1_15:91449600-91450513:+|nuORF	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	511.6871032714844	2	511.750724	1021.4869	-0.56815	-0.00029075	0.42092	0.00021541	-0.14723	-7.5344E-05	511.7504032977626	65.329	0.40724	65.329	65.055	65.462	0					13	7	3	0	0	0	0.43185	1	23655	23655		23.148	0	1	1293900			13872	9056	10103	10179	13500	13500					-0.022988054821894366
FAATHSLEF	9	Unmodified	_FAATHSLEF_					0	0	0		ENST00000560192.5_1_15:91447248-91454469:+|nuORF;nc|ENSG00000196547|P49641-2|MAN2A2;nc|ENSG00000196547|P49641-1|MAN2A2;ENSG00000196547|ENST00000559717|MAN2A2;ENST00000558640.5_1_15:91449600-91450513:+|nuORF	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1679077148438	2	511.750724	1021.4869	-0.67638	-0.00034614	-0.27387	-0.00014015	-0.95025	-0.00048629	511.750480258386	64.447	0.30549	65.187	64.954	65.259	0.74023					8	5	2	0	0	0	0.47368	1	24438	24438		26.884	26.884	1	1264000			13873	9056	10103	10179	13501	13501					-0.022988054821894366
FAAVGYKHS	9	Unmodified	_FAAVGYKHS_					0	0	0			REV__ENSG00000135824|ENST00000515211|RGS8	REV__ENSG00000135824|ENST00000515211|RGS8	MULTI-SECPEP	A375_MHC_IP_R1	1	490.6530456542969	2	490.253434	978.492316	-0.31987	-0.00015682	-0.23206	-0.00011377	-0.55194	-0.00027059	490.25336751962686	61.509	0.76688	61.509	61.176	61.943	0					24	14	2	0	0	0	0.50702	1	22143	22143		32.305	3.8186	1	16316000	+		13874	18887	10104	10180	13502	13502					0.002209181002854166
FAAVGYKHS	9	Unmodified	_FAAVGYKHS_					0	0	0			REV__ENSG00000135824|ENST00000515211|RGS8	REV__ENSG00000135824|ENST00000515211|RGS8	MULTI-SECPEP	A375_MHC_IP_R2	2	490.6531982421875	2	490.253434	978.492316	-0.8393	-0.00041147	0.025774	1.2636E-05	-0.81353	-0.00039883	490.2535066847915	60.695	0.55807	61.44	61.16	61.718	0.74503					25	10	4	0	0	0	0.60917	1	22948	22948		19.257	19.257	1	23814000	+		13875	18887	10104	10180	13503	13503					0.002209181002854166
FACQSYPCY	9	Unmodified	_FACQSYPCY_					0	0	0			REV__nc|ENSG00000138185|P49961-4|ENTPD1	REV__nc|ENSG00000138185|P49961-4|ENTPD1	MULTI-MSMS	A375_MHC_IP_R1	1	542.197509765625	2	541.209521	1080.40449	-0.51548	-0.00027898	0.49462	0.00026769	-0.020864	-1.1292E-05	541.2100602479768	88.575	0.71387	88.575	88.256	88.97	0					23	13	3	0	0	0	0.71977	1	32447	32447		5.2307	0	1	2863400	+		13876	19075	10105	10181	13504	13504					-0.13249786877008773
FADDMYSLY	9	Unmodified	_FADDMYSLY_					0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-SECPEP	A375_MHC_IP_R1	1	1124.8616943359375	1	1124.46049	1123.45321	0.26852	0.00030194	0.33907	0.00038127	0.60759	0.00068322	1124.4602474522767	109.61	0.40824	109.61	109.37	109.78	0					11	7	2	0	0	0	0.3213	1	40226	40226		46.021	32.513	1	1521400			13877	8390	10106	10182	13505	13505					-0.10357595036248313
FADEGSIFY	9	Unmodified	_FADEGSIFY_					0	0	0		nc|ENSG00000107745|Q9BPX6-2|MICU1;ENSG00000107745|ENST00000361114|MICU1;nc|ENSG00000107745|Q9BPX6-3|MICU1;nc|ENSG00000107745|Q9BPX6-6|MICU1	nc|ENSG00000107745|Q9BPX6-2|MICU1	nc|ENSG00000107745|Q9BPX6-2|MICU1	MULTI-SECPEP	A375_MHC_IP_R2	2	1048.9007568359375	1	1048.4622	1047.45493	0.059399	6.2277E-05	-0.21841	-0.000229	-0.15901	-0.00016672	1048.4619119881418	102.73	0.61094	103.49	103.18	103.79	0.76429					24	11	3	0	0	0	0.58271	1	38834	38834		26.884	11.036	1	5641500			13878	2756	10107	10183	13506	13506					-0.06690217955997468
FADFDDIY	8	Unmodified	_FADFDDIY_					0	0	0		tr|U7SMI7|U7SMI7_FUSNUPeptidyl-prolylcis-transisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01883PE=3SV=1	tr|U7SMI7|U7SMI7_FUSNUPeptidyl-prolylcis-transisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01883PE=3SV=1	tr|U7SMI7|U7SMI7_FUSNUPeptidyl-prolylcis-transisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01883PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	503.6142578125	2	503.21364	1004.41273	-0.4117	-0.00020718	1.4616	0.0007355	1.0499	0.00052833	503.2147503630352	91.607	0.65699	91.607	91.299	91.956	0					26	12	3	0	0	0	0.72761	4	33636	33576;33636;33668;33692		26.341	11.76	1	3019100			13879	29529	10108	10184	13507;13508;13509;13510	13508					-0.08930193364381012
FADFDDIY	8	Unmodified	_FADFDDIY_					0	0	0		tr|U7SMI7|U7SMI7_FUSNUPeptidyl-prolylcis-transisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01883PE=3SV=1	tr|U7SMI7|U7SMI7_FUSNUPeptidyl-prolylcis-transisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01883PE=3SV=1	tr|U7SMI7|U7SMI7_FUSNUPeptidyl-prolylcis-transisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01883PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	503.7030029296875	2	503.21364	1004.41273	-0.55082	-0.00027718	0.83754	0.00042146	0.28672	0.00014428	503.21460629645554	90.89	0.60759	91.624	91.311	91.919	0.73451					25	11	3	0	0	0	0.72761	1	34545	34545		26.341	6.9023	1	3381500			13880	29529	10108	10184	13511	13511					-0.08930193364381012
FADFDDIY	8	Unmodified	_FADFDDIY_					0	0	0		tr|U7SMI7|U7SMI7_FUSNUPeptidyl-prolylcis-transisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01883PE=3SV=1	tr|U7SMI7|U7SMI7_FUSNUPeptidyl-prolylcis-transisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01883PE=3SV=1	tr|U7SMI7|U7SMI7_FUSNUPeptidyl-prolylcis-transisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01883PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	503.21364	1004.41273	-0.55082	-0.00027718	0.83754	0.00042146	0.28672	0.00014428	503.21460629645554	90.89	0.60759	91.624	91.311	91.919	0.73451	0.0083694	-0.00041684	NaN	26.341	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3381500			13881	29529	10108	10184							-0.08930193364381012
FADGFVLVY	9	Unmodified	_FADGFVLVY_					0	0	0		ENSG00000197885|ENST00000425478|NKIRAS1	ENSG00000197885|ENST00000425478|NKIRAS1	ENSG00000197885|ENST00000425478|NKIRAS1	MULTI-MSMS	A375_MHC_IP_R2	2	516.1656494140625	2	515.765843	1029.51713	-0.80641	-0.00041592	0.39586	0.00020417	-0.41055	-0.00021175	515.7658738279548	129.4	0.35239	129.64	129.47	129.82	0.23946					9	6	2	0	0	0	0.11296	1	50862	50862		48.346	16.04	1	4831100			13882	9205	10109	10185	13512	13512					0.0035555318299884675
FADTTSYLI	9	Unmodified	_FADTTSYLI_					0	0	0		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-MSMS	A375_MHC_IP_R1	1	515.7098999023438	2	515.758215	1029.50188	-0.36615	-0.00018885	-0.94543	-0.00048761	-1.3116	-0.00067646	515.7575620572381	82.228	0.45795	82.228	82.011	82.469	0					13	8	2	0	0	0	0.5339	1	30124	30124		18.135	2.2878	1	1071700			13883	3844	10110	10186	13513	13513					-0.011693584048543926
FAEDFTDR	8	Unmodified	_FAEDFTDR_					0	0	0			REV__ENSG00000144031|ENST00000360589|ANKRD53	REV__ENSG00000144031|ENST00000360589|ANKRD53	MULTI-MSMS	A375_MHC_IP_R1	1	501.18011474609375	2	500.722164	999.429775	-0.53935	-0.00027006	0.073378	3.6742E-05	-0.46597	-0.00023332	500.7220638183143	27.762	0.25303	27.762	27.634	27.887	0					6	4	2	0	0	0	0.7754	1	8449	8449		11.64	0.81637	1	573630	+		13884	19406	10111	10187	13514	13514					-0.06996272758567557
FAEHNDLQY	9	Unmodified	_FAEHNDLQY_					0	0	0		ENSG00000130741|ENST00000253039|EIF2S3;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000130741|ENST00000253039|EIF2S3	ENSG00000130741|ENST00000253039|EIF2S3	MULTI-MSMS	A375_MHC_IP_R1	1	568.6743774414062	2	568.753995	1135.49344	-0.31749	-0.00018057	2.9487	0.0016771	2.6312	0.0014965	568.7541009818462	40.267	0.81467	40.267	39.948	40.762	0					55	15	6	0	0	0	0.11629	1	13776	13776		47.749	13.646	1	30858000			13885	4276	10112	10188	13515	13515					-0.06888912321483076
FAEHNDLQY	9	Unmodified	_FAEHNDLQY_					0	0	0		ENSG00000130741|ENST00000253039|EIF2S3;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000130741|ENST00000253039|EIF2S3	ENSG00000130741|ENST00000253039|EIF2S3	MULTI-MSMS	A375_MHC_IP_R2	2	569.153564453125	2	568.753995	1135.49344	-0.38013	-0.0002162	3.4182	0.0019441	3.0381	0.0017279	568.7540214687498	39.534	0.71092	40.308	39.965	40.676	0.77451					52	13	6	0	0	0	0.0099737	2	14602	14602;14683		96.367	41.593	1	24545000			13886	4276	10112	10188	13516;13517	13516					-0.06888912321483076
FAEKYAQLY	9	Unmodified	_FAEKYAQLY_					0	0	0			REV__nc|ENSG00000111602|Q9UNS1-2|TIMELESS	REV__nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-SECPEP	A375_MHC_IP_R1	1	567.1866455078125	2	566.787307	1131.56006	-0.24222	-0.00013729	0.017505	9.9218E-06	-0.22471	-0.00012736	566.7870431981021	68.815	0.71041	68.815	68.565	69.275	0					20	13	2	0	0	0	0.39388	1	24998	24998		32.305	0	1	4614000	+		13887	17678	10113	10189	13518	13518					-0.0004567675957787287
FAEKYAQLY	9	Unmodified	_FAEKYAQLY_					0	0	0			REV__nc|ENSG00000111602|Q9UNS1-2|TIMELESS	REV__nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-MSMS	A375_MHC_IP_R2	2	567.689453125	2	566.787307	1131.56006	-0.28073	-0.00015911	0.43237	0.00024506	0.15165	8.5951E-05	566.7871583036282	68.213	0.71173	68.948	68.56	69.272	0.73512					28	13	3	0	0	0	0.67332	1	25942	25942		9.3831	0.63772	1	6120100	+		13888	17678	10113	10189	13519	13519					-0.0004567675957787287
FAELYSKYL	9	Unmodified	_FAELYSKYL_					0	0	0			REV__ATP6V0D2|p.E250Gfs*15|1|0.14|ENSG00000147614|chr8:86150221-86150221|A/-|frameshift_variant	REV__ATP6V0D2|p.E250Gfs*15|1|0.14|ENSG00000147614|chr8:86150221-86150221|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	567.697021484375	2	567.297507	1132.58046	-0.55792	-0.00031651	-0.25112	-0.00014246	-0.80904	-0.00045897	567.2971824070604	97.029	1.0661	97.785	97.519	98.585	0.75587					29	20	3	0	0	0	0.57304	1	36845	36845		32.305	18.399	1	2237900	+		13889	15479	10114	10190	13520	13520					0.019474939002293468
FAEWYVRGFFF	11	Unmodified	_FAEWYVRGFFF_					0	0	0		ENST00000520983.5_1_8:28651295-28747426:-|nuORF	ENST00000520983.5_1_8:28651295-28747426:-|nuORF	ENST00000520983.5_1_8:28651295-28747426:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	490.1729736328125	3	490.239796	1467.69756	-0.85024	-0.00041682	-0.69079	-0.00033865	-1.541	-0.00075547	490.2394550615322	23.374	0.30218	24.005	23.878	24.18	0.63014					13	5	3	0	0	0	1.0002	1	7520	7520		2.8433	0.21205	1	11152000			13890	13004	10115	10191	13521	13521					-0.017583481601832318
FAFDREAL	8	Unmodified	_FAFDREAL_					0	0	0		nc|ENSG00000166484|Q13164-4|MAPK7;ENST00000570306.5_1_17:19283765-19285121:+|nuORF;nc|ENSG00000166484|Q13164-3|MAPK7;ENST00000490660.2_1_17:19282213-19285121:+|nuORF;nc|ENSG00000166484|Q13164-2|MAPK7;ENSG00000166484|ENST00000395604|MAPK7	nc|ENSG00000166484|Q13164-4|MAPK7	nc|ENSG00000166484|Q13164-4|MAPK7	MULTI-MSMS	A375_MHC_IP_R2	2	485.1449890136719	2	484.745442	967.476331	-0.60932	-0.00029536	-0.013494	-6.5413E-06	-0.62281	-0.0003019	484.7452904329815	67.293	0.55792	68.029	67.75	68.308	0.73631					20	10	3	0	0	0	0.73111	1	25498	25498		25.399	2.663	1	2506800			13891	7082	10116	10192	13522	13522					-0.008707881366376569
FAFEHSEEY	9	Unmodified	_FAFEHSEEY_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000568870.1_1_16:89958640-89960287:+|nuORF;TCF25|p.L347Sfs*5|1|0.25|ENSG00000141002|chr16:89898571-89898571|C/-|frameshift_variant	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MSMS	A375_MHC_IP_R1	1	580.1403198242188	2	579.740554	1157.46655	-0.11971	-6.9398E-05	0.13857	8.0336E-05	0.018866	1.0937E-05	579.7406155276514	54.573	0.81218	54.573	54.263	55.075	0					40	15	4	0	0	0	0.0016247	2	19464	19434;19464		147.83	113.43	1	14992000			13892	5206	10117	10193	13523;13524	13524					-0.10588020932664222
FAFEHSEEY	9	Unmodified	_FAFEHSEEY_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000568870.1_1_16:89958640-89960287:+|nuORF;TCF25|p.L347Sfs*5|1|0.25|ENSG00000141002|chr16:89898571-89898571|C/-|frameshift_variant	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MSMS	A375_MHC_IP_R2	2	579.673583984375	2	579.740554	1157.46655	-0.68569	-0.00039752	-0.22845	-0.00013244	-0.91414	-0.00052996	579.7404481135633	53.88	0.76691	54.631	54.301	55.068	0.75105					33	14	4	0	0	0	0.0025821	2	20366	20305;20366		139.54	116.4	1	11908000			13893	5206	10117	10193	13525;13526	13526					-0.10588020932664222
FAFLRQEL	8	Unmodified	_FAFLRQEL_					0	0	0		ENST00000473301.1_1_7:95224333-95225617:-|nuORF;ENSG00000004799|ENST00000005178|PDK4	ENST00000473301.1_1_7:95224333-95225617:-|nuORF	ENST00000473301.1_1_7:95224333-95225617:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	512.684814453125	2	512.284734	1022.55492	-0.40265	-0.00020627	0.20817	0.00010664	-0.19447	-9.9625E-05	512.2846531862615	89.067	1.1665	89.067	88.764	89.931	0					40	22	3	0	0	0	0.46955	1	32695	32695		65.235	29.191	1	2168400			13894	871	10118	10194	13527	13527					0.04454064168453442
FAFLRQEL	8	Unmodified	_FAFLRQEL_					0	0	0		ENST00000473301.1_1_7:95224333-95225617:-|nuORF;ENSG00000004799|ENST00000005178|PDK4	ENST00000473301.1_1_7:95224333-95225617:-|nuORF	ENST00000473301.1_1_7:95224333-95225617:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1436767578125	2	512.284734	1022.55492	-0.68959	-0.00035326	0.46494	0.00023818	-0.22465	-0.00011508	512.2848267154886	88.18	0.96289	88.911	88.519	89.482	0.7318					26	18	2	0	0	0	0.80467	1	33553	33553		41.84	14.956	1	2697900			13895	871	10118	10194	13528	13528					0.04454064168453442
FAFTPSRIY	9	Unmodified	_FAFTPSRIY_					0	0	0		nc|ENSG00000145495|O60337-5|MARCHF6	nc|ENSG00000145495|O60337-5|MARCHF6	nc|ENSG00000145495|O60337-5|MARCHF6	MULTI-SECPEP	A375_MHC_IP_R1	1	551.6900024414062	2	551.290017	1100.56548	-0.50074	-0.00027605	2.7616	0.0015224	2.2608	0.0012464	551.2899547557446	83.099	0.50573	83.099	82.823	83.329	0					33	9	5	0	0	0	0.087712	1	30406	30406		66.457	14.188	1	2518400			13896	14662	10119	10195	13529	13529					0.019220468228922982
FAFTPSRIY	9	Unmodified	_FAFTPSRIY_					0	0	0		nc|ENSG00000145495|O60337-5|MARCHF6	nc|ENSG00000145495|O60337-5|MARCHF6	nc|ENSG00000145495|O60337-5|MARCHF6	MULTI-SECPEP	A375_MHC_IP_R2	2	551.68994140625	2	551.290017	1100.56548	-0.81188	-0.00044758	0.098407	5.4251E-05	-0.71348	-0.00039333	551.2901713883864	82.319	0.50807	83.062	82.839	83.347	0.74293					16	9	2	0	0	0	0.087712	1	31274	31274		66.457	22.598	1	4113400			13897	14662	10119	10195	13530	13530					0.019220468228922982
FAFWRRDLRRF	11	Unmodified	_FAFWRRDLRRF_					0	0	0		ENST00000505007.5_1_5:138941007-138941097:+|nuORF	ENST00000505007.5_1_5:138941007-138941097:+|nuORF	ENST00000505007.5_1_5:138941007-138941097:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	523.6110229492188	3	523.956505	1568.84768	-0.37303	-0.00019545	1.37	0.00071781	0.99696	0.00052236	523.9572596283562	62.548	0.51262	62.548	62.3	62.813	0					11	9	2	0	0	0	1.001	1	22669	22669		1.4551	0.94916	1	1180700			13898	12833	10120	10196	13531	13531					0.0860143662214341
FAGCWLPFF	9	Unmodified	_FAGCWLPFF_					0	0	0		ENSG00000162009|ENST00000689027|SSTR5	ENSG00000162009|ENST00000689027|SSTR5	ENSG00000162009|ENST00000689027|SSTR5	MULTI-MSMS	A375_MHC_IP_R2	2	544.6569213867188	2	544.257131	1086.49971	-0.96369	-0.0005245	-1.2225	-0.00066536	-2.1862	-0.0011899	544.2567122855862	50.749	1.4208	51.503	50.294	51.715	0.75406					35	27	2	0	0	0	0.33325	1	19056	19056		28.173	1.2896	1	1705500			13899	6503	10121	10197	13532	13532					-0.04008065623656876
FAGPKEPSHF	10	Unmodified	_FAGPKEPSHF_					0	0	0			REV__nc|ENSG00000285975|A6NKC0|FAM90A7	REV__nc|ENSG00000285975|A6NKC0|FAM90A7	MSMS	A375_MHC_IP_R1	1	372.9642639160156	3	372.853941	1115.53999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.118	1	22.118	21.618	22.618	0								0	0	0	0.15591	1	5902	5902		0.69767	0	1		+		13900	21101	10122	10198	13533	13533					-0.013154276995237524
FAHPYQYEL	9	Unmodified	_FAHPYQYEL_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	A375_MHC_IP_R1	1	584.67724609375	2	584.277106	1166.53966	-0.16582	-9.6887E-05	0.40501	0.00023664	0.23918	0.00013975	584.2772519507631	63.044	0.71525	63.044	62.762	63.477	0					40	13	4	0	0	0	0.022213	1	22739	22739		81.613	43.639	1	21140000			13901	7646	10123	10199	13534	13534					-0.0369484741938777
FAHPYQYEL	9	Unmodified	_FAHPYQYEL_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	A375_MHC_IP_R2	2	584.6767578125	2	584.277106	1166.53966	-0.58963	-0.00034451	0.18207	0.00010638	-0.40755	-0.00023812	584.2771591527992	62.356	1.2146	63.098	62.724	63.938	0.74263					48	23	4	0	0	0	0.022213	2	23582	23551;23582		81.613	43.639	1	19011000			13902	7646	10123	10199	13535;13536	13536					-0.0369484741938777
FAIGGIARTY	10	Unmodified	_FAIGGIARTY_					0	0	0		ENSG00000134262|ENST00000369569|AP4B1;ENST00000479285.5_1_1:114438859-114442862:-|nuORF	ENSG00000134262|ENST00000369569|AP4B1	ENSG00000134262|ENST00000369569|AP4B1	MULTI-SECPEP	A375_MHC_IP_R1	1	535.19482421875	2	534.795466	1067.57638	-0.65071	-0.000348	-0.48099	-0.00025723	-1.1317	-0.00060523	534.7952263442759	73.133	0.4557	73.133	72.83	73.285	0					18	8	3	0	0	0	0.36543	1	26609	26609		57.249	29.62	1	3424100			13903	4561	10124	10200	13537	13537					0.045294491971844764
FAIGGIARTY	10	Unmodified	_FAIGGIARTY_					0	0	0		ENSG00000134262|ENST00000369569|AP4B1;ENST00000479285.5_1_1:114438859-114442862:-|nuORF	ENSG00000134262|ENST00000369569|AP4B1	ENSG00000134262|ENST00000369569|AP4B1	MULTI-SECPEP	A375_MHC_IP_R2	2	535.1948852539062	2	534.795466	1067.57638	-0.99586	-0.00053258	1.2817	0.00068544	0.28583	0.00015286	534.7954417312914	72.287	0.55757	73.022	72.77	73.328	0.73482					26	10	4	0	0	0	0.17899	1	27425	27425		74.2	39.798	1	3927700			13904	4561	10124	10200	13538	13538					0.045294491971844764
FAKHGAPF	8	Unmodified	_FAKHGAPF_					0	0	0			REV__ENST00000369604.5_1_1:114301878-114302094:-|nuORF	REV__ENST00000369604.5_1_1:114301878-114302094:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	438.1318664550781	2	437.732138	873.449723	-0.20895	-9.1464E-05	0.071294	3.1208E-05	-0.13766	-6.0257E-05	437.73200325199383	44.26	0.40593	45.029	44.782	45.188	0.7691					19	7	3	0	0	0	0.7773	1	16527	16527		4.756	1.1595	1	1962400	+		13905	24011	10125	10201	13539	13539					0.007935677627074256
FAKMDQKYFVY	11	Unmodified	_FAKMDQKYFVY_					0	0	0			REV__NLRC3|p.E417K|1|0.38|ENSG00000167984|chr16:3563688-3563688|C/T|missense_variant	REV__NLRC3|p.E417K|1|0.38|ENSG00000167984|chr16:3563688-3563688|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	480.6141357421875	3	480.572446	1438.69551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.794	1	31.512	31.012	32.012	0.71857								0	0	0	0.16309	1	10847	10847		2.6312	0	1		+		13906	27610	10126	10202	13540	13540					-0.006291449602713328
FAKVQPIL	8	Unmodified	_FAKVQPIL_					0	0	0		nc|ENSG00000151458|Q9ULJ7-2|ANKRD50;ENSG00000151458|ENST00000504087|ANKRD50	nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	MULTI-MSMS	A375_MHC_IP_R1	1	458.68670654296875	2	458.286746	914.558939	-0.39246	-0.00017986	0.59147	0.00027107	0.19901	9.1204E-05	458.28700813471517	65.896	0.55713	65.896	65.565	66.122	0					20	10	3	0	0	0	0.38921	1	23866	23866		53.576	21.459	1	3157500			13907	5906	10127	10203	13541	13541					0.09824153662179924
FAKVQPIL	8	Unmodified	_FAKVQPIL_					0	0	0		nc|ENSG00000151458|Q9ULJ7-2|ANKRD50;ENSG00000151458|ENST00000504087|ANKRD50	nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	MULTI-MSMS	A375_MHC_IP_R2	2	458.6861267089844	2	458.286746	914.558939	-0.36413	-0.00016687	-0.081037	-3.7138E-05	-0.44516	-0.00020401	458.2866499070354	64.908	0.55722	65.646	65.41	65.968	0.73811					21	10	3	0	0	0	0.38921	1	24600	24600		53.576	21.459	1	2401900			13908	5906	10127	10203	13542	13542					0.09824153662179924
FALNHPEL	8	Unmodified	_FALNHPEL_					0	0	0		nc|ENSG00000101079|Q9UGV2-3|NDRG3;nc|ENSG00000101079|Q9UGV2-2|NDRG3;ENSG00000101079|ENST00000349004|NDRG3	nc|ENSG00000101079|Q9UGV2-3|NDRG3	nc|ENSG00000101079|Q9UGV2-3|NDRG3	MULTI-MSMS	A375_MHC_IP_R1	1	471.14788818359375	2	470.747985	939.481417	-0.60892	-0.00028665	0.21931	0.00010324	-0.38962	-0.00018341	470.7480427762032	66.674	0.76526	66.674	66.377	67.143	0					26	14	3	0	0	0	0.059747	1	24116	24116		133.7	65.621	1	7412800			13909	2249	10128	10204	13543	13543					0.009255157259872249
FALNHPEL	8	Unmodified	_FALNHPEL_					0	0	0		nc|ENSG00000101079|Q9UGV2-3|NDRG3;nc|ENSG00000101079|Q9UGV2-2|NDRG3;ENSG00000101079|ENST00000349004|NDRG3	nc|ENSG00000101079|Q9UGV2-3|NDRG3	nc|ENSG00000101079|Q9UGV2-3|NDRG3	MULTI-SECPEP	A375_MHC_IP_R2	2	471.1476745605469	2	470.747985	939.481417	-0.78811	-0.000371	0.13373	6.2954E-05	-0.65438	-0.00030805	470.7479890833593	65.751	0.9175	66.489	66.222	67.14	0.73812					29	17	3	0	0	0	0.10712	1	24900	24900		133.7	73.312	1	7248900			13910	2249	10128	10204	13544	13544					0.009255157259872249
FALPYIRDV	9	Unmodified	_FALPYIRDV_					0	0	0		ENSG00000126088|ENST00000246337|UROD;ENST00000494399.5_1_1:45480113-45480266:+|nuORF	ENSG00000126088|ENST00000246337|UROD	ENSG00000126088|ENST00000246337|UROD	MULTI-SECPEP	A375_MHC_IP_R1	1	547.1823120117188	2	547.305667	1092.59678	-0.4905	-0.00026845	0.39818	0.00021792	-0.092324	-5.053E-05	547.3062522941179	102.7	0.60854	102.7	102.4	103.01	0					21	11	3	0	0	0	0.65527	1	37794	37794		22.736	22.736	1	2076400			13911	4024	10129	10205	13545	13545					0.05418619857005069
FALVFVQWE	9	Unmodified	_FALVFVQWE_					0	0	0			REV__ENSG00000188735|ENST00000449592|TMEM120B	REV__ENSG00000188735|ENST00000449592|TMEM120B	MULTI-SECPEP	A375_MHC_IP_R2	2	379.58526611328125	3	380.20257	1137.58588	-0.17808	-6.7705E-05	2.7979	0.0010638	2.6199	0.00099607	380.20416921182067	36.334	0.71236	37.105	36.698	37.41	0.7709					26	13	3	0	0	0	0.76187	1	13313	13313		7.609	5.5229	1	3514200	+		13912	22109	10130	10206	13546	13546					0.022592174827195777
FALVLVWFVPT	11	Unmodified	_FALVLVWFVPT_					0	0	0			REV__nc|ENSG00000186854|Q86V40-2|TRABD2A	REV__nc|ENSG00000186854|Q86V40-2|TRABD2A	MULTI-MSMS	A375_MHC_IP_R2	2	431.988037109375	3	431.253154	1290.73763	-0.094329	-4.068E-05	3.8331	0.001653	3.7388	0.0016124	431.5880492353645	135.61	0.92093	135.75	135.15	136.07	0.13901					32	17	4	0	0	0	0.73886	1	53306	53306		0.45452	0.1855	1	3002500	+		13913	21989	10131	10207	13547	13547					0.10389198510415554
FAMEFVKYY	9	Unmodified	_FAMEFVKYY_					0	0	0		ENSG00000159459|ENST00000290650|UBR1;UBR1|p.Q713Rfs*20|1|0.03|ENSG00000159459|chr15:43036232-43036232|A/-|frameshift_variant;nc|ENSG00000159459|Q8IWV7-2|UBR1	ENSG00000159459|ENST00000290650|UBR1	ENSG00000159459|ENST00000290650|UBR1	MULTI-MSMS	A375_MHC_IP_R1	1	599.1927490234375	2	599.286085	1196.55762	-0.37331	-0.00022372	0.69891	0.00041885	0.3256	0.00019513	599.2861820465605	100.25	0.45654	100.25	100.03	100.48	0					15	8	2	0	0	0	0.032333	1	36861	36861		72.968	54.822	1	2636000			13914	6373	10132	10208	13548	13548					-0.03279848488864445
FAMEFVKYY	9	Unmodified	_FAMEFVKYY_					0	0	0		ENSG00000159459|ENST00000290650|UBR1;UBR1|p.Q713Rfs*20|1|0.03|ENSG00000159459|chr15:43036232-43036232|A/-|frameshift_variant;nc|ENSG00000159459|Q8IWV7-2|UBR1	ENSG00000159459|ENST00000290650|UBR1	ENSG00000159459|ENST00000290650|UBR1	MULTI-MSMS	A375_MHC_IP_R2	2	599.6849975585938	2	599.286085	1196.55762	-0.28801	-0.0001726	0.00049723	2.9798E-07	-0.28752	-0.0001723	599.2857861642561	99.548	0.66152	100.31	99.964	100.63	0.76278					21	12	3	0	0	0	0.037683	2	37766	37674;37766		69.105	50.97	1	2098800			13915	6373	10132	10208	13549;13550	13550					-0.03279848488864445
FAMPYFIQV	9	Unmodified	_FAMPYFIQV_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	A375_MHC_IP_R1	1	558.6827392578125	2	558.283346	1114.55214	-0.75693	-0.00042258	0.089069	4.9726E-05	-0.66786	-0.00037285	558.2832951424816	131.86	0.45361	131.86	131.68	132.13	0					14	8	3	0	0	0	0.089948	1	50847	50847		70.716	70.716	1	7281200			13916	5230	10133	10209	13551	13551					-0.0005552728071052115
FANDANKVL	9	Unmodified	_FANDANKVL_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.S1772Ffs*12|1|0.13|ENSG00000123104|chr12:26494208-26494209|-/A|frameshift_variant	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-SECPEP	A375_MHC_IP_R2	2	496.6635437011719	2	496.263999	990.513445	-0.51796	-0.00025705	-0.37583	-0.00018651	-0.89379	-0.00044356	496.26369711426474	40.035	0.30401	40.809	40.676	40.98	0.77451					10	5	3	0	0	0	0.05217	1	14839	14839		89.401	49.443	1	2879000			13917	3825	10134	10210	13552	13552					0.01780883409139733
FANGCENCIY	10	Unmodified	_FANGCENCIY_					0	0	0			REV__ENSG00000187187|ENST00000347077|ZNF546	REV__ENSG00000187187|ENST00000347077|ZNF546	MSMS	A375_MHC_IP_R1	1	567.1866455078125	2	567.223159	1132.43177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.911	1	68.911	68.411	69.411	0								0	0	0	0.15417	1	24998	24998		7.2892	1.5288	1		+		13918	22012	10135	10211	13553	13553					-0.12915303336626494
FANHTIQIRQ	10	Unmodified	_FANHTIQIRQ_					0	0	0		nc|ENSG00000144401|Q8WXB1-2|METTL21A;ENST00000471128.1_1_2:208485467-208489843:-|nuORF;ENSG00000144401|ENST00000411432|METTL21A	nc|ENSG00000144401|Q8WXB1-2|METTL21A	nc|ENSG00000144401|Q8WXB1-2|METTL21A	MSMS	A375_MHC_IP_R2	2	409.88861083984375	3	409.891278	1226.652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.045	1	19.648	19.148	20.148	0.60308								0	0	0	0.14741	1	5792	5792		14.957	9.1737	1				13919	5484	10136	10212	13554	13554					0.0477442637745753
FANNEKINK	9	Unmodified	_FANNEKINK_					0	0	0			REV__nc|ENSG00000196236|Q9NQH7-2|XPNPEP3	REV__nc|ENSG00000196236|Q9NQH7-2|XPNPEP3	MULTI-SECPEP	A375_MHC_IP_R1	1	360.26055908203125	3	359.861096	1076.56146	0.32947	0.00011856	-1.0366	-0.00037304	-0.70715	-0.00025447	359.8606421315586	71.67	0.7037	71.67	71.465	72.169	0					19	13	2	0	0	0	0.78348	1	26071	26071		2.4985	0	1	4067900	+		13920	22175	10137	10213	13555	13555					0.02623957329183213
FANNPREL	8	Unmodified	_FANNPREL_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-SECPEP	A375_MHC_IP_R1	1	481.14837646484375	2	480.748516	959.482479	-0.59325	-0.0002852	0.36324	0.00017463	-0.23001	-0.00011058	480.74875234543833	32.493	0.50928	32.493	32.075	32.585	0					11	9	2	0	0	0	0.85715	1	10526	10526		17.113	17.113	1	4303000			13921	6434	10138	10214	13556	13556					0.0011173009490903496
FANNPREL	8	Unmodified	_FANNPREL_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-SECPEP	A375_MHC_IP_R2	2	481.1484069824219	2	480.748516	959.482479	-0.58371	-0.00028062	0.16024	7.7033E-05	-0.42348	-0.00020359	480.7486560003729	31.72	0.40671	32.457	32.198	32.605	0.73691					13	7	3	0	0	0	0.87023	1	11236	11236		27.629	0	1	3762500			13922	6434	10138	10214	13557	13557					0.0011173009490903496
FANPDPGRLAP	11	Unmodified	_FANPDPGRLAP_					0	0	0		ENST00000394833.6_1_4:103265936-103266233:-|nuORF	ENST00000394833.6_1_4:103265936-103266233:-|nuORF	ENST00000394833.6_1_4:103265936-103266233:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	384.8867492675781	3	385.536612	1153.58801	-0.54403	-0.00020974	2.9357	0.0011318	2.3917	0.00092208	385.53773732070823	52.4	0.30215	53.152	52.983	53.285	0.75225					9	5	2	0	0	0	0.99424	1	19700	19700		2.2527	0.51045	1	1105400			13923	11459	10139	10215	13558	13558					0.017356462205270873
FANSRDTSF	9	Unmodified	_FANSRDTSF_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1406860351562	2	522.740888	1043.46722	-0.63336	-0.00033108	0.82889	0.0004333	0.19553	0.00010221	522.7414565546909	32.274	1.0673	32.274	31.769	32.836	0					56	20	5	0	0	0	0.044425	1	10386	10386		96.936	62.534	1	41349000			13924	7431	10140	10216	13559	13559					-0.0527718149296561
FANSRDTSF	9	Unmodified	_FANSRDTSF_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1414184570312	2	522.740888	1043.46722	-0.58997	-0.0003084	0.53003	0.00027707	-0.05994	-3.1333E-05	522.7413205102257	31.575	0.96728	32.307	31.885	32.852	0.73209					53	18	5	0	0	0	0.025037	1	11138	11138		110.55	66.146	1	47440000			13925	7431	10140	10216	13560	13560					-0.0527718149296561
FANYIDKV	8	Unmodified	_FANYIDKV_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R1	1	485.6553039550781	2	485.255643	968.496732	-0.19317	-9.3738E-05	-0.093236	-4.5243E-05	-0.28641	-0.00013898	485.25558368525276	55.862	0.55908	55.862	55.584	56.143	0					24	10	3	0	0	0	0.055258	1	19968	19968		126.57	66.176	1	7256200			13926	1093	10141	10217	13561	13561					0.011223825231923001
FANYIDKV	8	Unmodified	_FANYIDKV_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	A375_MHC_IP_R2	2	485.6553649902344	2	485.255643	968.496732	-0.73291	-0.00035565	0.18559	9.0059E-05	-0.54732	-0.00026559	485.2557746569046	55.038	0.91555	55.788	55.422	56.337	0.75075					30	17	3	0	0	0	0.0075766	1	20784	20784		155.03	105.09	1	7806900			13927	1093	10141	10217	13562	13562					0.011223825231923001
FAPELQCQTN	10	Unmodified	_FAPELQCQTN_					0	0	0			REV__ENST00000537981.5_2_11:63523602-63525863:+|nuORF	REV__ENST00000537981.5_2_11:63523602-63525863:+|nuORF	MSMS	A375_MHC_IP_R1	1	575.682373046875	2	575.763506	1149.51246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.248	1	82.248	81.748	82.748	0								0	0	0	0.14983	1	30075	30075		18.146	3.3081	1		+		13928	25931	10142	10218	13563	13563					-0.05631699022046632
FAPPQPVAA	9	Unmodified	_FAPPQPVAA_					0	0	0		ENSG00000128016|ENST00000597629|ZFP36	ENSG00000128016|ENST00000597629|ZFP36	ENSG00000128016|ENST00000597629|ZFP36	MULTI-MSMS	A375_MHC_IP_R1	1	449.64471435546875	2	449.245078	896.475603	-0.1552	-6.9723E-05	-0.10181	-4.5735E-05	-0.257	-0.00011546	449.24498530934545	61.474	0.71275	61.474	61.075	61.788	0					27	13	3	0	0	0	0.067501	1	22133	22133		57.471	19.32	1	4294300			13929	4119	10143	10219	13564	13564					0.023224172143159194
FAPPQPVAA	9	Unmodified	_FAPPQPVAA_					0	0	0		ENSG00000128016|ENST00000597629|ZFP36	ENSG00000128016|ENST00000597629|ZFP36	ENSG00000128016|ENST00000597629|ZFP36	MULTI-MSMS	A375_MHC_IP_R2	2	449.6448669433594	2	449.245078	896.475603	-0.60671	-0.00027256	0.08019	3.6025E-05	-0.52652	-0.00023653	449.24510612364975	60.738	0.65971	61.483	61.109	61.769	0.74503					24	12	2	0	0	0	0.098973	1	22983	22983		50.855	26.181	1	4539100			13930	4119	10143	10219	13565	13565					0.023224172143159194
FAQDVGRMF	9	Oxidation (M)	_FAQDVGRM(Oxidation (M))F_		FAQDVGRM(1)F		FAQDVGRM(77)F	0	0	1		nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000598355.1_1_19:59061017-59061917:+|nuORF	nc|ENSG00000130726|Q13263-2|TRIM28	nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-MSMS	A375_MHC_IP_R1	1	544.1546630859375	2	543.755484	1085.49641	-0.52305	-0.00028441	-0.48831	-0.00026552	-1.0114	-0.00054993	543.75549291935	50.992	3.0462	50.992	50.254	53.301	0					102	59	3	0	0	0	0.027818	2	18032	18032;18247		76.825	34.985	1	5130600			13931	4272	10144	10220	13566;13567	13566		221			-0.04291360468300809
FAQDVGRMF	9	Oxidation (M)	_FAQDVGRM(Oxidation (M))F_		FAQDVGRM(1)F		FAQDVGRM(50)F	0	0	1		nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000598355.1_1_19:59061017-59061917:+|nuORF	nc|ENSG00000130726|Q13263-2|TRIM28	nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-MSMS	A375_MHC_IP_R2	2	544.155029296875	2	543.755484	1085.49641	-0.80126	-0.00043569	-0.41374	-0.00022497	-1.215	-0.00066066	543.7551914696099	45.827	1.7202	46.592	45.897	47.617	0.76518					78	33	4	0	0	0	0.10622	1	17288	17288		49.554	18.918	1	20846000			13932	4272	10144	10220	13568	13568		221			-0.04291360468300809
FAQDVGRMF	9	Oxidation (M)	_FAQDVGRM(Oxidation (M))F_		FAQDVGRM(1)F		FAQDVGRM(66)F	0	0	1		nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000598355.1_1_19:59061017-59061917:+|nuORF	nc|ENSG00000130726|Q13263-2|TRIM28	nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-MSMS	A375_MHC_IP_R2	2	544.2145385742188	2	543.755484	1085.49641	-1.0455	-0.0005685	0.22183	0.00012062	-0.82369	-0.00044789	543.7556686876	50.83	3.1437	51.584	50.854	53.998	0.75406					82	61	2	0	0	0	0.04447	1	19293	19293		66.457	15.602	1	3903300			13933	4272	10144	10220	13569	13569		221			-0.04291360468300809
FAQDVGRMF	9	Unmodified	_FAQDVGRMF_					0	0	0		nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000598355.1_1_19:59061017-59061917:+|nuORF	nc|ENSG00000130726|Q13263-2|TRIM28	nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1577758789062	2	535.758027	1069.5015	-0.62912	-0.00033706	0.36306	0.00019451	-0.26606	-0.00014255	535.7583099848324	70.855	0.81857	70.855	70.545	71.364	0					41	15	4	0	0	0	0.053555	1	25704	25704		71.708	49.961	1	28749000			13934	4272	10144	10221	13570	13570					-0.03047056605691978
FAQDVGRMF	9	Unmodified	_FAQDVGRMF_					0	0	0		nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000598355.1_1_19:59061017-59061917:+|nuORF	nc|ENSG00000130726|Q13263-2|TRIM28	nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-SECPEP	A375_MHC_IP_R2	2	536.1577758789062	2	535.758027	1069.5015	-0.78489	-0.00042051	-0.14848	-7.9549E-05	-0.93337	-0.00050006	535.7579336062877	70.084	0.96432	70.818	70.488	71.453	0.73421					52	18	4	0	0	0	0.076731	1	26534	26534		63.227	37.828	1	29268000			13935	4272	10144	10221	13571	13571					-0.03047056605691978
FAQGCEECTY	10	Unmodified	_FAQGCEECTY_					0	0	0			REV__ENSG00000241149|ENST00000330020|ZNF722	REV__ENSG00000241149|ENST00000330020|ZNF722	MULTI-MSMS	A375_MHC_IP_R1	1	575.6380615234375	2	575.712624	1149.4107	-0.28997	-0.00016694	0.57415	0.00033055	0.28418	0.00016361	575.7128986365062	46.57	1.0694	46.57	46.245	47.315	0					52	20	4	0	0	0	0.55789	1	16394	16394		24.021	0.87215	1	22586000	+		13936	21875	10145	10222	13572	13572					-0.15803313436140343
FAQGCEECTY	10	Unmodified	_FAQGCEECTY_					0	0	0			REV__ENSG00000241149|ENST00000330020|ZNF722	REV__ENSG00000241149|ENST00000330020|ZNF722	MULTI-MSMS	A375_MHC_IP_R2	2	575.6378784179688	2	575.712624	1149.4107	-0.11596	-6.6762E-05	0.43421	0.00024998	0.31825	0.00018322	575.7128306796524	46.1	1.0143	46.865	46.503	47.517	0.76518					49	19	4	0	0	0	0.45919	1	17228	17228		30.637	3.7529	1	25915000	+		13937	21875	10145	10222	13573	13573					-0.15803313436140343
FAQSILERGG	10	Unmodified	_FAQSILERGG_					0	0	0		TOP3A|p.N830Tfs*52|1|0.27|ENSG00000177302|chr17:18278015-18278015|G/-|frameshift_variant;nc|ENSG00000177302|Q13472-3|TOP3A;nc|ENSG00000177302|Q13472-2|TOP3A;ENSG00000177302|ENST00000321105|TOP3A	TOP3A|p.N830Tfs*52|1|0.27|ENSG00000177302|chr17:18278015-18278015|G/-|frameshift_variant	TOP3A|p.N830Tfs*52|1|0.27|ENSG00000177302|chr17:18278015-18278015|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	360.59490966796875	3	359.861096	1076.56146	-0.29694	-0.00010686	-0.66148	-0.00023804	-0.95841	-0.0003449	360.19513328724656	70.846	0.70893	71.58	71.402	72.111	0.73421					24	13	3	0	0	0	0.71866	1	26875	26875		1.9064	0	1	3611700			13938	8074	10146	10223	13574	13574					0.026239573292059504
FAQVMLLA	8	Unmodified	_FAQVMLLA_					0	0	0			REV__ENSG00000177084|ENST00000320574|POLE	REV__ENSG00000177084|ENST00000320574|POLE	MSMS	A375_MHC_IP_R1	1	446.64984130859375	2	446.751682	891.48881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.195	1	55.195	54.695	55.695	0								0	0	0	0.16876	1	19733	19733		5.7604	0	1		+		13939	21436	10147	10224	13575	13575					0.03872532002060325
FARAELERT	9	Unmodified	_FARAELERT_					0	0	0		nc|ENSG00000123989|Q8IZ52-4|CHPF;ENSG00000123989|ENST00000243776|CHPF	nc|ENSG00000123989|Q8IZ52-4|CHPF	nc|ENSG00000123989|Q8IZ52-4|CHPF	MULTI-SECPEP	A375_MHC_IP_R2	2	364.6025085449219	3	364.864729	1091.57236	-0.034675	-1.2652E-05	0.1238	4.5172E-05	0.089129	3.252E-05	364.86475869092817	39.826	0.45737	40.601	40.269	40.727	0.77451					11	8	2	0	0	0	0.69179	1	14621	14621		21.59	21.59	1	3111600			13940	3866	10148	10225	13576	13576					0.03023359703456663
FARCTFEKD	9	Unmodified	_FARCTFEKD_					0	0	0			REV__nc|ENSG00000240935|Q15195|PLGLA	REV__nc|ENSG00000240935|Q15195|PLGLA	MSMS	A375_MHC_IP_R1	1	558.6849975585938	2	558.760766	1115.50698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.131	1	98.131	97.631	98.631	0								0	0	0	0.1499	1	36053	36053		21.747	1.293	1		+		13941	18349	10149	10226	13577	13577					-0.04615377813865962
FARDPLAL	8	Unmodified	_FARDPLAL_					0	0	0		ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	A375_MHC_IP_R1	1	452.1581115722656	2	451.758352	901.502152	-0.066893	-3.0219E-05	-0.076587	-3.4599E-05	-0.14348	-6.4818E-05	451.75820876942174	71.082	0.4628	71.082	70.8	71.262	0					15	8	2	0	0	0	0.85138	1	25816	25816		38.176	22.328	1	1920000			13942	7061	10150	10227	13578	13578					0.0474610610565378
FARDPLAL	8	Unmodified	_FARDPLAL_					0	0	0		ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	A375_MHC_IP_R2	2	452.1583251953125	2	451.758352	901.502152	-0.20523	-9.2713E-05	-0.51524	-0.00023277	-0.72047	-0.00032548	451.758172955644	70.084	0.60846	70.818	70.591	71.2	0.73421					17	11	2	0	0	0	0.73262	1	26598	26598		24.991	9.1438	1	2135200			13943	7061	10150	10227	13579	13579					0.0474610610565378
FARKKSKRSS	10	Unmodified	_FARKKSKRSS_					0	0	0			REV__ENSG00000182752|ENST00000328252|PAPPA	REV__ENSG00000182752|ENST00000328252|PAPPA	MULTI-MSMS	A375_MHC_IP_R1	1	598.2546997070312	2	597.856921	1193.69929	-0.20032	-0.00011976	-1.5007	-0.00089719	-1.701	-0.001017	597.8558688207906	127.95	0.65903	127.95	127.77	128.43	0					43	12	4	0	0	0	0.70793	1	49126	49126		8.7454	3.0136	1	123130000	+		13944	21706	10151	10228	13580	13580					0.11018705648461946
FARRPVRPV	9	Unmodified	_FARRPVRPV_					0	0	0			REV__ARHGEF15|p.S242F|1|0.31|ENSG00000198844|chr17:8313045-8313045|C/T|missense_variant	REV__ARHGEF15|p.S242F|1|0.31|ENSG00000198844|chr17:8313045-8313045|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	366.2453918457031	3	366.561203	1096.66178	0.15424	5.654E-05	0.072058	2.6413E-05	0.2263	8.2953E-05	366.56118280637867	28.82	0.45481	28.82	28.643	29.098	0					20	8	3	0	0	0	0.79429	1	9017	9017		7.1017	2.7725	1	13057000	+		13945	15441	10152	10229	13581	13581					0.11731659173506159
FARRPVRPV	9	Unmodified	_FARRPVRPV_					0	0	0			REV__ARHGEF15|p.S242F|1|0.31|ENSG00000198844|chr17:8313045-8313045|C/T|missense_variant	REV__ARHGEF15|p.S242F|1|0.31|ENSG00000198844|chr17:8313045-8313045|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	366.60174560546875	3	366.561203	1096.66178	0.049365	1.8095E-05	-0.10715	-3.9277E-05	-0.057786	-2.1182E-05	366.56115619299356	27.951	0.45692	28.63	28.401	28.858	0.67857					18	8	3	0	0	0	0.79429	1	9560	9560		7.1017	7.1017	1	18624000	+		13946	15441	10152	10229	13582	13582					0.11731659173506159
FARVKVFNA	9	Unmodified	_FARVKVFNA_					0	0	0			REV__ENSG00000111799|ENST00000322507|COL12A1	REV__ENSG00000111799|ENST00000322507|COL12A1	MULTI-MSMS	A375_MHC_IP_R1	1	351.6062316894531	3	351.206426	1050.59745	-0.18787	-6.5981E-05	-0.20069	-7.0484E-05	-0.38856	-0.00013647	351.5407235238125	52.516	0.45675	52.516	52.237	52.694	0					15	8	2	0	0	0	0.69317	1	18718	18718		7.609	0.88579	1	3501300	+		13947	17695	10153	10230	13583	13583					0.07417459296698325
FASCEDSEAP	10	Unmodified	_FASCEDSEAP_					0	0	0		ENST00000493544.1_1_2:242054361-242072488:-|nuORF;nc|ENSG00000115687|Q96RG2-4|PASK;ENSG00000115687|ENST00000234040|PASK;nc|ENSG00000115687|Q96RG2-2|PASK	ENST00000493544.1_1_2:242054361-242072488:-|nuORF	ENST00000493544.1_1_2:242054361-242072488:-|nuORF	MSMS	A375_MHC_IP_R1	1	352.36968994140625	3	352.471057	1054.39134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.749	1	24.749	24.249	25.249	0								0	0	0	0.15508	1	7099	7099		2.086	0.89267	1				13948	3331	10154	10231	13584	13584					-0.13367946455423407
FASEAREI	8	Unmodified	_FASEAREI_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.K1434Nfs*14|1|0.29|ENSG00000153207|chr1:246855808-246855809|AC/-|frameshift_variant;ENST00000470300.5_1_1:247027247-247061635:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-SECPEP	A375_MHC_IP_R1	1	462.1348571777344	2	461.735074	921.455596	-0.21568	-9.9586E-05	0.18425	8.5075E-05	-0.031427	-1.4511E-05	461.735116763263	31.469	0.86412	31.469	31.16	32.024	0					41	16	4	0	0	0	0.24136	1	10053	10053		75.761	10.526	1	14572000			13949	6016	10155	10232	13585	13585					-0.00827378516294175
FASEAREI	8	Unmodified	_FASEAREI_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.K1434Nfs*14|1|0.29|ENSG00000153207|chr1:246855808-246855809|AC/-|frameshift_variant;ENST00000470300.5_1_1:247027247-247061635:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MSMS	A375_MHC_IP_R2	2	461.6610412597656	2	461.735074	921.455596	-0.5138	-0.00023724	0.18401	8.4965E-05	-0.32978	-0.00015227	461.7351480156927	30.792	0.70858	31.51	31.266	31.974	0.71857					31	13	3	0	0	0	0.77374	1	11024	11024		13.906	0.86358	1	15545000			13950	6016	10155	10232	13586	13586					-0.00827378516294175
FASEAREI	8	Unmodified	_FASEAREI_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.K1434Nfs*14|1|0.29|ENSG00000153207|chr1:246855808-246855809|AC/-|frameshift_variant;ENST00000470300.5_1_1:247027247-247061635:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	461.735074	921.455596	-0.5138	-0.00023724	0.18401	8.4965E-05	-0.32978	-0.00015227	461.7351480156927	30.792	0.70858	31.51	31.266	31.974	0.71857	0.02056	-1.0724E-07	NaN	75.761	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15545000			13951	6016	10155	10232							-0.00827378516294175
FASEEPRKI	9	Unmodified	_FASEEPRKI_					0	0	0		ENST00000508684.5_1_4:2845646-2877643:+|nuORF	ENST00000508684.5_1_4:2845646-2877643:+|nuORF	ENST00000508684.5_1_4:2845646-2877643:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	360.23895263671875	3	359.529346	1075.56621	-0.58071	-0.00020878	-0.034728	-1.2486E-05	-0.61544	-0.00022127	359.5292182887335	24.64	0.8132	25.283	25.06	25.873	0.64368					39	15	3	0	0	0	0.67483	1	8163	8163		14.405	0.79051	1	29319000			13952	12882	10156	10233	13587	13587					0.03144841471953441
FASEVSNVL	9	Unmodified	_FASEVSNVL_					0	0	0		STAM|p.E181Dfs*24|1|0.16|ENSG00000136738|chr10:17695056-17695059|GTTG/-|frameshift_variant;nc|ENSG00000136738|Q92783-2|STAM;ENSG00000136738|ENST00000377524|STAM	STAM|p.E181Dfs*24|1|0.16|ENSG00000136738|chr10:17695056-17695059|GTTG/-|frameshift_variant	STAM|p.E181Dfs*24|1|0.16|ENSG00000136738|chr10:17695056-17695059|GTTG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	483.6506042480469	2	483.250557	964.486562	-0.32332	-0.00015624	0.47691	0.00023047	0.15359	7.4222E-05	483.2508085355158	83.338	0.86182	83.338	82.823	83.685	0					22	16	2	0	0	0	0.012712	1	30495	30495		92.822	46.801	1	1856800			13953	4812	10157	10234	13588	13588					0.002897747979545784
FASEVSNVL	9	Unmodified	_FASEVSNVL_					0	0	0		STAM|p.E181Dfs*24|1|0.16|ENSG00000136738|chr10:17695056-17695059|GTTG/-|frameshift_variant;nc|ENSG00000136738|Q92783-2|STAM;ENSG00000136738|ENST00000377524|STAM	STAM|p.E181Dfs*24|1|0.16|ENSG00000136738|chr10:17695056-17695059|GTTG/-|frameshift_variant	STAM|p.E181Dfs*24|1|0.16|ENSG00000136738|chr10:17695056-17695059|GTTG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	965.3323974609375	1	965.493838	964.486562	-0.10215	-9.8621E-05	0.15758	0.00015214	0.055432	5.3519E-05	965.4934804062584	82.568	0.6579	83.311	82.889	83.547	0.74294					24	12	3	0	0	0	0.04447	1	31405	31405		66.457	16.524	1	3568900			13954	4812	10157	10234	13589	13589					0.002897747979545784
FASEVSNVL	9	Unmodified	_FASEVSNVL_					0	0	0		STAM|p.E181Dfs*24|1|0.16|ENSG00000136738|chr10:17695056-17695059|GTTG/-|frameshift_variant;nc|ENSG00000136738|Q92783-2|STAM;ENSG00000136738|ENST00000377524|STAM	STAM|p.E181Dfs*24|1|0.16|ENSG00000136738|chr10:17695056-17695059|GTTG/-|frameshift_variant	STAM|p.E181Dfs*24|1|0.16|ENSG00000136738|chr10:17695056-17695059|GTTG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6498718261719	2	483.250557	964.486562	-0.60298	-0.00029139	-0.25843	-0.00012489	-0.86141	-0.00041628	483.25048203435216	82.495	0.70812	83.238	82.94	83.648	0.74293					21	13	2	0	0	0	0.07754	1	31358	31358		74.423	36.449	1	1809500			13955	4812	10157	10234	13590	13590					0.002897747979545784
FASEVSNVL	9	Unmodified	_FASEVSNVL_					0	0	0		STAM|p.E181Dfs*24|1|0.16|ENSG00000136738|chr10:17695056-17695059|GTTG/-|frameshift_variant;nc|ENSG00000136738|Q92783-2|STAM;ENSG00000136738|ENST00000377524|STAM	STAM|p.E181Dfs*24|1|0.16|ENSG00000136738|chr10:17695056-17695059|GTTG/-|frameshift_variant	STAM|p.E181Dfs*24|1|0.16|ENSG00000136738|chr10:17695056-17695059|GTTG/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R1	1		1	965.493838	964.486562	0.1063	0.00010263	-0.42452	-0.00040987	-0.31822	-0.00030724	965.4935101708556	83.222	0.75993	83.222	82.874	83.634	0	-0.044855	-0.0001814	NaN	66.457	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3956000			13956	4812	10157	10234							0.002897747979545784
FASGLIHRV	9	Unmodified	_FASGLIHRV_					0	0	0		ENST00000490672.1_1_1:155141918-155142388:-|nuORF;ENST00000463527.5_1_1:155141918-155144917:-|nuORF;ENST00000471891.5_1_1:155141918-155145146:-|nuORF;ENSG00000163463|ENST00000295682|KRTCAP2;nc|ENSG00000163463|Q8N6L1-2|KRTCAP2;ENST00000497317.5_1_1:155141901-155145703:-|nuORF	ENST00000490672.1_1_1:155141918-155142388:-|nuORF	ENST00000490672.1_1_1:155141918-155142388:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	500.71893310546875	2	500.290351	998.566149	-0.37776	-0.00018899	-0.14021	-7.0143E-05	-0.51797	-0.00025913	500.29029106668844	42.071	0.80972	42.071	41.828	42.638	0					27	15	2	0	0	0	0.0096896	1	14621	14621		110.67	78.558	1	19083000			13957	6666	10158	10235	13591	13591					0.06680886262597596
FASGLIHRV	9	Unmodified	_FASGLIHRV_					0	0	0		ENST00000490672.1_1_1:155141918-155142388:-|nuORF;ENST00000463527.5_1_1:155141918-155144917:-|nuORF;ENST00000471891.5_1_1:155141918-155145146:-|nuORF;ENSG00000163463|ENST00000295682|KRTCAP2;nc|ENSG00000163463|Q8N6L1-2|KRTCAP2;ENST00000497317.5_1_1:155141901-155145703:-|nuORF	ENST00000490672.1_1_1:155141918-155142388:-|nuORF	ENST00000490672.1_1_1:155141918-155142388:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	500.68988037109375	2	500.290351	998.566149	-0.8384	-0.00041944	0.141	7.0541E-05	-0.6974	-0.0003489	500.290356779127	41.095	0.65908	41.869	41.641	42.3	0.77451					31	12	4	0	0	0	0.007896	1	15224	15224		129.77	89.823	1	18357000			13958	6666	10158	10235	13592	13592					0.06680886262597596
FASGPREL	8	Unmodified	_FASGPREL_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1;ENST00000358133.5_1_1:11994791-12014648:+|nuORF	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	A375_MHC_IP_R1	1	439.13232421875	2	438.732335	875.450116	-0.143	-6.274E-05	0.11966	5.2501E-05	-0.023339	-1.0239E-05	438.73236822533886	34.72	0.30319	34.72	34.507	34.81	0					9	5	2	0	0	0	0.47739	1	11467	11467		49.933	3.912	1	5598500			13959	1777	10159	10236	13593	13593					0.007409426918911777
FASGPREL	8	Unmodified	_FASGPREL_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1;ENST00000358133.5_1_1:11994791-12014648:+|nuORF	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	438.732335	875.450116	-0.78278	-0.00034343	0.24378	0.00010695	-0.539	-0.00023648	438.7323513302384	33.937	0.35364	34.689	34.5	34.853	0.75225	-0.015376	5.0103E-05	NaN	49.933	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4794400			13960	1777	10159	10236							0.007409426918911777
FASHVSPEV	9	Unmodified	_FASHVSPEV_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-SECPEP	A375_MHC_IP_R1	1	487.1427001953125	2	486.742899	971.471246	-0.14965	-7.2841E-05	0.053809	2.6191E-05	-0.095841	-4.665E-05	486.74277728645575	37.234	0.91689	37.234	36.945	37.862	0					50	17	5	0	0	0	0.010931	1	12513	12513		139.54	84.77	1	36952000			13961	9794	10160	10237	13594	13594					-0.01563091999230437
FASHVSPEV	9	Unmodified	_FASHVSPEV_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-SECPEP	A375_MHC_IP_R2	2	487.14263916015625	2	486.742899	971.471246	-0.82812	-0.00040308	0.052497	2.5553E-05	-0.77562	-0.00037753	486.74289699255166	36.361	0.81448	37.131	36.901	37.716	0.7709					33	15	3	0	0	0	0.010931	1	13212	13212		139.54	82.073	1	35879000			13962	9794	10160	10237	13595	13595					-0.01563091999230437
FASIENNKVI	10	Unmodified	_FASIENNKVI_					0	0	0		ENST00000530597.1_1_1:111772478-111773566:+|nuORF;ENST00000526684.1_1_1:111772478-111773917:+|nuORF;nc|ENSG00000064886|Q15782-6|CHI3L2;ENSG00000064886|ENST00000369748|CHI3L2	ENST00000530597.1_1_1:111772478-111773566:+|nuORF	ENST00000530597.1_1_1:111772478-111773566:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	567.6785888671875	2	567.811313	1133.60807	-0.35248	-0.00020014	-0.85271	-0.00048418	-1.2052	-0.00068432	567.811279709866	70.595	0.25307	71.329	71.149	71.402	0.73421					9	4	3	0	0	0	0.76414	1	26784	26784		26.884	8.7373	1	2378000			13963	1362	10161	10238	13596	13596					0.04661397160475644
FASKFFNY	8	Unmodified	_FASKFFNY_					0	0	0		tr|U7T1M4|U7T1M4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00867PE=4SV=1	tr|U7T1M4|U7T1M4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00867PE=4SV=1	tr|U7T1M4|U7T1M4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00867PE=4SV=1	MSMS	A375_MHC_IP_R1	1	512.1795043945312	2	512.25036	1022.48617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.322	1	42.322	41.822	42.822	0								0	0	0	0.16876	1	14661	14661		14.582	5.9884	1				13964	29908	10162	10239	13597	13597					-0.024176001312412154
FASLRLSMSY	10	Unmodified	_FASLRLSMSY_					0	0	0			REV__ENST00000479165.1_1_6:79650412-79665440:-|nuORF	REV__ENST00000479165.1_1_6:79650412-79665440:-|nuORF	MSMS	A375_MHC_IP_R1	1	587.7273559570312	2	587.799891	1173.58523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.342	1	94.342	93.842	94.842	0								0	0	0	0.14804	1	34676	34676		21.537	3.3906	1		+		13965	19526	10163	10240	13598	13598					0.0053805477134574176
FASMHWAF	8	Unmodified	_FASMHWAF_					0	0	0			REV__ENSG00000164123|ENST00000434826|C4orf45	REV__ENSG00000164123|ENST00000434826|C4orf45	MULTI-MSMS	A375_MHC_IP_R2	2	498.6519470214844	2	498.723455	995.432358	-0.92721	-0.00046242	2.4733	0.0012335	1.5461	0.00077107	498.724937883561	59.072	0.45671	59.819	59.59	60.047	0.74714					14	8	2	0	0	0	0.7758	1	22348	22348		10.183	0.83596	1	1446800	+		13966	20454	10164	10241	13599	13599					-0.06554095834610507
FASNHIQL	8	Unmodified	_FASNHIQL_					0	0	0		nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000113742|ENST00000265085|CPEB4;ENST00000518141.1_1_5:173317696-173318377:+|nuORF;ENST00000522344.1_1_5:173317696-173337630:+|nuORF	nc|ENSG00000113742|Q17RY0-2|CPEB4	nc|ENSG00000113742|Q17RY0-2|CPEB4	MSMS	A375_MHC_IP_R1	1	465.6456604003906	2	465.245609	928.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.444	1	49.444	48.944	49.944	0								0	0	0	0.16826	1	17486	17486		41.84	3.8656	1				13967	3180	10165	10242	13600	13600					0.009566315832444161
FASNHIQL	8	Unmodified	_FASNHIQL_					0	0	0		nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000113742|ENST00000265085|CPEB4;ENST00000518141.1_1_5:173317696-173318377:+|nuORF;ENST00000522344.1_1_5:173317696-173337630:+|nuORF	nc|ENSG00000113742|Q17RY0-2|CPEB4	nc|ENSG00000113742|Q17RY0-2|CPEB4	MULTI-MSMS	A375_MHC_IP_R2	2	465.645263671875	2	465.245609	928.476666	-0.62196	-0.00028937	0.19457	9.0523E-05	-0.42739	-0.00019884	465.2455717581709	48.397	0.45365	49.155	48.929	49.383	0.75737					13	8	2	0	0	0	0.33238	1	18190	18190		56.177	23.872	1	2422800			13968	3180	10165	10242	13601	13601					0.009566315832444161
FASPGRLF	8	Unmodified	_FASPGRLF_					0	0	0		ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	MULTI-SECPEP	A375_MHC_IP_R1	1	448.1450500488281	2	447.745245	893.475937	0.030829	1.3804E-05	-0.48194	-0.00021579	-0.45111	-0.00020198	447.7450530328261	72.545	0.86147	72.545	72.22	73.082	0					39	16	4	0	0	0	0.23546	1	26361	26361		85.272	14.556	1	11556000			13969	4250	10166	10243	13602	13602					0.02493836934183946
FASPGRLF	8	Unmodified	_FASPGRLF_					0	0	0		ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	MULTI-SECPEP	A375_MHC_IP_R2	2	448.14508056640625	2	447.745245	893.475937	-0.64398	-0.00028834	0.040691	1.8219E-05	-0.60329	-0.00027012	447.7452449549858	71.612	0.65847	72.346	72.111	72.77	0.73421					31	12	3	0	0	0	0.55873	1	27167	27167		58.679	7.8238	1	11793000			13970	4250	10166	10243	13603	13603					0.02493836934183946
FASPRNLL	8	Unmodified	_FASPRNLL_					0	0	0			REV__AMBRA1|p.Y510*|1|0.18|ENSG00000110497|chr11:46542487-46542487|A/-|frameshift_variant	REV__AMBRA1|p.Y510*|1|0.18|ENSG00000110497|chr11:46542487-46542487|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	459.6634826660156	2	459.263802	916.513051	-0.35035	-0.0001609	-0.58512	-0.00026872	-0.93547	-0.00042963	459.2634573132095	44.343	0.50661	45.112	44.883	45.39	0.7691					16	9	2	0	0	0	0.8957	1	16577	16577		21.747	0	1	1882100	+		13971	15385	10167	10244	13604	13604					0.051455084799385986
FASTILHLV	9	Unmodified	_FASTILHLV_					0	0	0		ENSG00000129562|ENST00000250498|DAD1	ENSG00000129562|ENST00000250498|DAD1	ENSG00000129562|ENST00000250498|DAD1	MULTI-SECPEP	A375_MHC_IP_R1	1	500.7077331542969	2	500.794935	999.575317	-0.32118	-0.00016085	-0.18471	-9.2501E-05	-0.50589	-0.00025335	500.79483620867717	101.24	0.45674	101.24	101.04	101.5	0					16	8	3	0	0	0	0.20094	1	37195	37195		44.407	27.465	1	975140			13972	4198	10168	10245	13605	13605					0.07551234828281395
FASTILHLV	9	Unmodified	_FASTILHLV_					0	0	0		ENSG00000129562|ENST00000250498|DAD1	ENSG00000129562|ENST00000250498|DAD1	ENSG00000129562|ENST00000250498|DAD1	MULTI-SECPEP	A375_MHC_IP_R2	2	500.7076416015625	2	500.794935	999.575317	-0.36841	-0.0001845	0.015001	7.5126E-06	-0.35341	-0.00017698	500.79492473636174	100.19	0.45761	100.95	100.68	101.13	0.76278					13	8	2	0	0	0	0.52144	1	38030	38030		30.225	25.469	1	704870			13973	4198	10168	10245	13606	13606					0.07551234828281395
FASVVGQTN	9	Unmodified	_FASVVGQTN_					0	0	0			REV__ENST00000491703.5_1_21:35279611-35286837:-|nuORF	REV__ENST00000491703.5_1_21:35279611-35286837:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	461.66107177734375	2	461.735074	921.455596	-0.21568	-9.9586E-05	0.18425	8.5075E-05	-0.031427	-1.4511E-05	461.735116763263	31.469	0.86412	31.469	31.16	32.024	0					41	16	4	0	0	0	0.55471	1	10270	10270		17.113	1.2657	1	14572000	+		13974	22791	10169	10246	13607	13607					-0.008273785162828062
FATGPRIIG	9	Unmodified	_FATGPRIIG_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	A375_MHC_IP_R1	1	466.6715087890625	2	466.271627	930.528701	-0.13626	-6.3532E-05	0.21567	0.00010056	0.079412	3.7028E-05	466.2718285132946	54.535	0.75816	54.535	53.912	54.67	0					27	14	3	0	0	0	0.12592	1	19424	19424		46.021	1.6139	1	6487600	+		13975	21494	10170	10247	13608	13608					0.06065794996993645
FATGPRIIG	9	Unmodified	_FATGPRIIG_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	466.271627	930.528701	-0.13626	-6.3532E-05	0.21567	0.00010056	0.079412	3.7028E-05	466.2718285132946	54.535	0.75816	54.535	53.912	54.67	0	0.10494	0.00011688	NaN	46.021	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6487600	+		13976	21494	10170	10247							0.06065794996993645
FATGPRIIG	9	Unmodified	_FATGPRIIG_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MATCH	A375_MHC_IP_R2	2		2	466.271627	930.528701	-1.1653	-0.00054335	-0.0037192	-1.7342E-06	-1.169	-0.00054509	466.2715216050427	53.574	0.56292	54.326	54.046	54.609	0.75105	-0.10494	-8.7711E-05	NaN	46.021	27	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7065400	+		13977	21494	10170	10247							0.06065794996993645
FATGVWHQM	9	Unmodified	_FATGVWHQM_					0	0	0		ENSG00000128607|ENST00000335420|KLHDC10;ENST00000495724.1_1_7:129756322-129757411:+|nuORF	ENSG00000128607|ENST00000335420|KLHDC10	ENSG00000128607|ENST00000335420|KLHDC10	MULTI-MSMS	A375_MHC_IP_R1	1	539.1848754882812	2	538.752744	1075.49094	-0.7235	-0.00038979	-0.29141	-0.000157	-1.0149	-0.00054679	538.7527320329548	64.75	0.35703	64.75	64.546	64.903	0					13	6	3	0	0	0	0.32092	2	23390	23390;23472		29.082	3.4098	1	1317900			13978	4154	10171	10248	13609;13610	13609					-0.043790392601295025
FATIRTASL	9	Unmodified	_FATIRTASL_					0	0	0		nc|ENSG00000149930|Q9UL54-2|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-3|TAOK2;nc|ENSG00000160551|Q7L7X3-2|TAOK1;ENST00000577583.1_1_17:27807410-27838022:+|nuORF;ENSG00000160551|ENST00000261716|TAOK1;nc|ENSG00000160551|Q7L7X3-3|TAOK1	nc|ENSG00000149930|Q9UL54-2|TAOK2;ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MULTI-SECPEP	A375_MHC_IP_R1	1	490.6822814941406	2	490.282192	978.549831	-0.25981	-0.00012738	1.0557	0.00051758	0.79588	0.00039021	490.28288202353997	57.237	0.66224	57.237	56.956	57.618	0					15	12	2	0	0	0	0.13244	1	20563	20563		43.982	33.908	1	2486100			13979	5834;6424	10172	10249	13611	13611					0.059697603058339155
FATIRTASL	9	Unmodified	_FATIRTASL_					0	0	0		nc|ENSG00000149930|Q9UL54-2|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-3|TAOK2;nc|ENSG00000160551|Q7L7X3-2|TAOK1;ENST00000577583.1_1_17:27807410-27838022:+|nuORF;ENSG00000160551|ENST00000261716|TAOK1;nc|ENSG00000160551|Q7L7X3-3|TAOK1	nc|ENSG00000149930|Q9UL54-2|TAOK2;ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MULTI-MSMS	A375_MHC_IP_R2	2	490.6817321777344	2	490.282192	978.549831	-0.85335	-0.00041838	1.0462	0.00051294	0.19287	9.456E-05	490.28284769190935	56.376	0.50981	57.126	56.796	57.306	0.75015					17	9	3	0	0	0	0.062639	1	21323	21323		59.368	11.023	1	2436700			13980	5834;6424	10172	10249	13612	13612					0.059697603058339155
FATLRWIDY	9	Unmodified	_FATLRWIDY_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF;nc|ENSG00000127663|O94953-2|KDM4B	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-SECPEP	A375_MHC_IP_R1	1	593.2085571289062	2	592.808574	1183.60259	-0.18767	-0.00011125	0.31291	0.00018549	0.12524	7.4244E-05	592.8086988980332	106.33	0.71626	106.33	106.01	106.73	0					27	13	3	0	0	0	0.053555	1	39004	39004		90.135	64.736	1	4035100			13981	4101	10173	10250	13613	13613					0.018137183686576464
FATLRWIDY	9	Unmodified	_FATLRWIDY_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF;nc|ENSG00000127663|O94953-2|KDM4B	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-SECPEP	A375_MHC_IP_R2	2	593.208740234375	2	592.808574	1183.60259	-0.54124	-0.00032085	0.12989	7.7001E-05	-0.41135	-0.00024385	592.8086262129261	105.45	0.76361	106.21	105.82	106.58	0.76241					29	14	3	0	0	0	0.053555	1	39862	39862		80.676	55.277	1	4884600			13982	4101	10173	10250	13614	13614					0.018137183686576464
FATPFLVVR	9	Unmodified	_FATPFLVVR_					0	0	0		ENSG00000127184|ENST00000247655|COX7C;ENST00000511472.5_1_5:85913768-85915283:+|nuORF	ENSG00000127184|ENST00000247655|COX7C	ENSG00000127184|ENST00000247655|COX7C	MULTI-MSMS	A375_MHC_IP_R1	1	525.7109985351562	2	525.310752	1048.60695	-0.4367	-0.0002294	0.23176	0.00012174	-0.20494	-0.00010766	525.3108379158468	98.225	2.4347	98.225	97.49	99.925	0					133	47	5	0	0	0	0.033557	3	36052	36052;36257;36288		71.922	31.965	1	95292000			13983	4079	10174	10251	13615;13616;13617	13615					0.08459227582216045
FATPFLVVR	9	Unmodified	_FATPFLVVR_					0	0	0		ENSG00000127184|ENST00000247655|COX7C;ENST00000511472.5_1_5:85913768-85915283:+|nuORF	ENSG00000127184|ENST00000247655|COX7C	ENSG00000127184|ENST00000247655|COX7C	MULTI-MSMS	A375_MHC_IP_R2	2	525.7102661132812	2	525.310752	1048.60695	-0.65742	-0.00034535	-0.035838	-1.8826E-05	-0.69326	-0.00036418	525.3106962289305	97.301	1.9806	98.057	97.419	99.399	0.75586					106	38	6	0	0	0	0.0090323	1	36894	36894		99.799	63.755	1	95987000			13984	4079	10174	10251	13618	13618					0.08459227582216045
FATPFLVVRHQ	11	Unmodified	_FATPFLVVRHQ_					0	0	0		ENSG00000127184|ENST00000247655|COX7C;ENST00000511472.5_1_5:85913768-85915283:+|nuORF	ENSG00000127184|ENST00000247655|COX7C	ENSG00000127184|ENST00000247655|COX7C	MULTI-SECPEP	A375_MHC_IP_R1	1	439.5989990234375	3	438.915423	1313.72444	-0.13057	-5.7309E-05	0.44743	0.00019639	0.31686	0.00013908	438.9155257864731	73.361	0.35512	73.361	73.184	73.539	0					10	6	2	0	0	0	0.90409	1	26716	26716		22.109	20.894	1	1985500			13985	4079	10175	10252	13619	13619					0.0801276045101531
FATRRWIEY	9	Unmodified	_FATRRWIEY_					0	0	0		ENSG00000066135|ENST00000372396|KDM4A	ENSG00000066135|ENST00000372396|KDM4A	ENSG00000066135|ENST00000372396|KDM4A	MULTI-SECPEP	A375_MHC_IP_R1	1	414.6551818847656	3	414.552374	1240.63529	0.41296	0.00017119	-0.24981	-0.00010356	0.16315	6.7634E-05	414.5523283320043	55.973	0.50796	55.973	55.635	56.143	0					19	9	3	0	0	0	0.74327	1	19998	19998		13.519	9.9316	1	4318700			13986	1404	10176	10253	13620	13620					0.02459925491530157
FATRRWIEY	9	Unmodified	_FATRRWIEY_					0	0	0		ENSG00000066135|ENST00000372396|KDM4A	ENSG00000066135|ENST00000372396|KDM4A	ENSG00000066135|ENST00000372396|KDM4A	MULTI-SECPEP	A375_MHC_IP_R2	2	414.9524230957031	3	414.552374	1240.63529	-0.14503	-6.0124E-05	0.33277	0.00013795	0.18774	7.7826E-05	414.5525035308127	55.027	0.40931	55.778	55.523	55.933	0.75075					19	7	3	0	0	0	0.6191	1	20759	20759		22.775	12.624	1	3699400			13987	1404	10176	10253	13621	13621					0.02459925491530157
FATSERPP	8	Unmodified	_FATSERPP_					0	0	0			REV__ENSG00000198925|ENST00000361242|ATG9A	REV__ENSG00000198925|ENST00000361242|ATG9A	MULTI-SECPEP	A375_MHC_IP_R1	1	453.12957763671875	2	452.729792	903.445031	-0.41974	-0.00019003	-0.1782	-8.0675E-05	-0.59793	-0.0002707	452.7297257522239	24.053	0.65836	24.053	23.889	24.547	0					19	12	3	0	0	0	0.55372	1	6733	6733		57.471	13.064	1	7083700	+		13988	22450	10177	10254	13622	13622					-0.010553611707109667
FATSERPP	8	Unmodified	_FATSERPP_					0	0	0			REV__ENSG00000198925|ENST00000361242|ATG9A	REV__ENSG00000198925|ENST00000361242|ATG9A	MULTI-MSMS	A375_MHC_IP_R2	2	453.1296081542969	2	452.729792	903.445031	-0.5533	-0.00025049	-0.0042987	-1.9462E-06	-0.5576	-0.00025244	452.7297631447558	23.424	0.3536	24.054	23.878	24.232	0.63014					11	6	2	0	0	0	0.31691	1	7551	7551		57.471	21.427	1	6308600	+		13989	22450	10177	10254	13623	13623					-0.010553611707109667
FATSERPP	8	Unmodified	_FATSERPP_					0	0	0			REV__ENSG00000198925|ENST00000361242|ATG9A	REV__ENSG00000198925|ENST00000361242|ATG9A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	452.729792	903.445031	-0.5533	-0.00025049	-0.0042987	-1.9462E-06	-0.5576	-0.00025244	452.7297631447558	23.424	0.3536	24.054	23.878	24.232	0.63014	0.00087016	9.9394E-05	NaN	57.471	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6308600	+		13990	22450	10177	10254							-0.010553611707109667
FATSYIKER	9	Unmodified	_FATSYIKER_					0	0	0			REV__ENSG00000241973|ENST00000255882|PI4KA	REV__ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	A375_MHC_IP_R2	2	371.93255615234375	3	372.201229	1113.58186	0.010354	3.8536E-06	0.16668	6.2038E-05	0.17703	6.5892E-05	372.20131119276357	29.74	0.70764	30.439	30.286	30.993	0.69872					18	13	2	0	0	0	0.80713	1	10594	10594		4.1895	0	1	1461500	+		13991	22796	10178	10255	13624	13624					0.02961127988987755
FATTLYEKL	9	Unmodified	_FATTLYEKL_					0	0	0			REV__SKAP1|p.P346L|1|0.08|ENSG00000141293|chr17:48137279-48137279|G/A|missense_variant	REV__SKAP1|p.P346L|1|0.08|ENSG00000141293|chr17:48137279-48137279|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	361.9171447753906	3	362.534097	1084.58046	-0.33436	-0.00012122	1.7606	0.00063829	1.4263	0.00051707	362.5350417449991	37.713	0.71816	38.487	38.279	38.997	0.77451					15	13	2	0	0	0	0.74651	1	13769	13769		5.2969	4.3346	1	1040100	+		13992	27970	10179	10256	13625	13625					0.04155493900225338
FATVRETL	8	Unmodified	_FATVRETL_					0	0	0		ENSG00000146247|ENST00000275034|PHIP;PHIP|p.R1505Efs*9|1|0.47|ENSG00000146247|chr6:78946119-78946119|A/-|frameshift_variant;ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENSG00000146247|ENST00000275034|PHIP	ENSG00000146247|ENST00000275034|PHIP	MULTI-SECPEP	A375_MHC_IP_R1	1	469.160888671875	2	468.761092	935.507631	-0.30519	-0.00014306	-0.27142	-0.00012723	-0.57661	-0.00027029	468.76097478749523	47.436	0.50712	47.436	47.211	47.718	0					18	9	3	0	0	0	0.1789	1	16696	16696		88.954	34.18	1	7679800			13993	5612	10180	10257	13626	13626					0.03729784897484478
FATVRETL	8	Unmodified	_FATVRETL_					0	0	0		ENSG00000146247|ENST00000275034|PHIP;PHIP|p.R1505Efs*9|1|0.47|ENSG00000146247|chr6:78946119-78946119|A/-|frameshift_variant;ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENSG00000146247|ENST00000275034|PHIP	ENSG00000146247|ENST00000275034|PHIP	MULTI-SECPEP	A375_MHC_IP_R2	2	469.16094970703125	2	468.761092	935.507631	-0.47492	-0.00022262	-0.15911	-7.4584E-05	-0.63403	-0.00029721	468.76098946185226	46.523	0.45903	47.288	47.108	47.567	0.76519					18	8	3	0	0	0	0.42778	1	17432	17432		69.105	14.331	1	8875500			13994	5612	10180	10257	13627	13627					0.03729784897484478
FATVRWIDY	9	Unmodified	_FATVRWIDY_					0	0	0		nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;ENST00000489243.5_1_9:6758133-6893415:+|nuORF	nc|ENSG00000293552|Q9H3R0-3|KDM4C	nc|ENSG00000293552|Q9H3R0-3|KDM4C	MULTI-MSMS	A375_MHC_IP_R1	1	586.2003173828125	2	585.800749	1169.58694	-0.35931	-0.00021048	-0.72074	-0.00042221	-1.08	-0.00063269	585.8005176058949	94.324	0.9131	94.324	93.738	94.651	0					41	17	4	0	0	0	0.0094735	1	34631	34631		107.1	79.471	1	8056000			13995	2723	10181	10258	13628	13628					0.008934318516367057
FATVRWIDY	9	Unmodified	_FATVRWIDY_					0	0	0		nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;ENST00000489243.5_1_9:6758133-6893415:+|nuORF	nc|ENSG00000293552|Q9H3R0-3|KDM4C	nc|ENSG00000293552|Q9H3R0-3|KDM4C	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	585.800749	1169.58694	-0.39204	-0.00022966	-0.11282	-6.609E-05	-0.50486	-0.00029575	585.8008061449768	93.52	0.81394	94.264	93.853	94.667	0.74473	-0.029898	0.00041588	NaN	107.1	37	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9547300			13996	2723	10181	10258							0.008934318516367057
FAVDLEHHSY	10	Unmodified	_FAVDLEHHSY_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	A375_MHC_IP_R2	2	406.924072265625	3	406.524372	1216.55129	-0.15248	-6.1988E-05	-0.084463	-3.4336E-05	-0.23695	-9.6325E-05	406.5242608894513	51.291	0.3551	52.043	51.864	52.219	0.75225					9	6	2	0	0	0	0.67901	1	19337	19337		14.957	6.8016	1	1459300			13997	7646	10182	10259	13629	13629					-0.048326503960424816
FAVDPRIITH	10	Unmodified	_FAVDPRIITH_					0	0	0		ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MULTI-MSMS	A375_MHC_IP_R2	2	390.62066650390625	3	390.220624	1167.64004	-0.13386	-5.2235E-05	0.41758	0.00016295	0.28372	0.00011071	390.22071655496165	62.952	0.6063	63.695	63.434	64.04	0.74263					17	11	2	0	0	0	0.67901	1	23884	23884		14.957	7.9201	1	2127500			13998	9248	10183	10260	13630	13630					0.06292809634260266
FAVKVVNSN	9	Unmodified	_FAVKVVNSN_					0	0	0			REV__nc|ENSG00000119682|O15033-2|AREL1	REV__nc|ENSG00000119682|O15033-2|AREL1	MULTI-SECPEP	A375_MHC_IP_R1	1	489.67364501953125	2	489.274367	976.53418	-0.42528	-0.00020808	-0.16208	-7.93E-05	-0.58736	-0.00028738	489.27419514216257	65.758	0.50919	65.758	65.462	65.972	0					16	9	2	0	0	0	0.53748	1	23829	23829		30.637	2.1497	1	1812700	+		13999	18083	10184	10261	13631	13631					0.04497473788808293
FAVKVVNSN	9	Unmodified	_FAVKVVNSN_					0	0	0			REV__nc|ENSG00000119682|O15033-2|AREL1	REV__nc|ENSG00000119682|O15033-2|AREL1	MULTI-SECPEP	A375_MHC_IP_R2	2	489.6736755371094	2	489.274367	976.53418	-0.58669	-0.00028705	-0.19897	-9.7351E-05	-0.78566	-0.0003844	489.27425190522814	65.003	0.45642	65.741	65.461	65.917	0.73811					13	8	2	0	0	0	0.53748	1	24632	24632		30.637	2.1497	1	2003800	+		14000	18083	10184	10261	13632	13632					0.04497473788808293
FAVLAAKEL	9	Unmodified	_FAVLAAKEL_					0	0	0		ENSG00000048544|ENST00000053468|MRPS10	ENSG00000048544|ENST00000053468|MRPS10	ENSG00000048544|ENST00000053468|MRPS10	MULTI-MSMS	A375_MHC_IP_R2	2	481.6909484863281	2	481.289485	960.564418	-0.4787	-0.00023039	0.4603	0.00022154	-0.018399	-8.8553E-06	481.2897039312179	79.074	1.6254	79.818	78.982	80.607	0.74474					79	31	4	0	0	0	0.5339	1	29853	29853		18.135	0	1	28787000			14001	1215	10185	10262	13633	13633					0.08255832453994572
FAVLAAKEL	9	Unmodified	_FAVLAAKEL_					0	0	0		ENSG00000048544|ENST00000053468|MRPS10	ENSG00000048544|ENST00000053468|MRPS10	ENSG00000048544|ENST00000053468|MRPS10	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	481.289485	960.564418	-0.42084	-0.00020255	1.1599	0.00055825	0.73906	0.0003557	481.29007942679095	79.996	2.2899	79.996	78.556	80.846	0	0.088981	0.00040772	NaN	18.135	92	44	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26732000			14002	1215	10185	10262							0.08255832453994572
FAVNKKIEF	9	Unmodified	_FAVNKKIEF_					0	0	0		nc|ENSG00000133731|P29218-2|IMPA1;ENSG00000133731|ENST00000256108|IMPA1;nc|ENSG00000133731|P29218-3|IMPA1	nc|ENSG00000133731|P29218-2|IMPA1	nc|ENSG00000133731|P29218-2|IMPA1	MULTI-SECPEP	A375_MHC_IP_R1	1	366.2784729003906	3	365.878087	1094.61243	0.29967	0.00010964	0.42033	0.00015379	0.72	0.00026343	365.8781658838716	51.076	0.40495	51.076	50.814	51.219	0					14	7	3	0	0	0	0.56537	1	18140	18140		33.445	19.83	1	1859800			14003	4527	10186	10263	13634	13634					0.0689090637404206
FAVTLLFN	8	Unmodified	_FAVTLLFN_					0	0	0			REV__ENSG00000167895|ENST00000318430|TMC8	REV__ENSG00000167895|ENST00000318430|TMC8	MULTI-SECPEP	A375_MHC_IP_R2	2	463.16278076171875	2	462.763104	923.511654	-0.54007	-0.00024992	0.63886	0.00029564	0.098787	4.5715E-05	462.7631921138831	74.032	0.86401	74.769	74.501	75.365	0.73752					25	16	3	0	0	0	0.64636	1	28121	28121		42.095	0	1	1466700	+		14004	20803	10187	10264	13635	13635					0.046838743911848724
FAWLVASG	8	Unmodified	_FAWLVASG_					0	0	0			REV__ENSG00000113396|ENST00000262462|SLC27A6	REV__ENSG00000113396|ENST00000262462|SLC27A6	MULTI-MSMS	A375_MHC_IP_R1	1	426.1264343261719	2	425.726521	849.438489	0.033999	1.4474E-05	-0.084008	-3.5765E-05	-0.050009	-2.129E-05	425.72650472498856	42.562	0.40352	42.562	42.336	42.739	0					11	7	2	0	0	0	0.72761	1	14783	14783		26.341	0	1	2496100	+		14005	17778	10188	10265	13636	13636					0.007747456685592624
FAWLVASG	8	Unmodified	_FAWLVASG_					0	0	0			REV__ENSG00000113396|ENST00000262462|SLC27A6	REV__ENSG00000113396|ENST00000262462|SLC27A6	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	425.726521	849.438489	0.033999	1.4474E-05	-0.084008	-3.5765E-05	-0.050009	-2.129E-05	425.72650472498856	42.562	0.40352	42.562	42.336	42.739	0	0.033058	0.00018131	NaN	26.341	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2496100	+		14006	17778	10188	10265							0.007747456685592624
FAWLVASG	8	Unmodified	_FAWLVASG_					0	0	0			REV__ENSG00000113396|ENST00000262462|SLC27A6	REV__ENSG00000113396|ENST00000262462|SLC27A6	MULTI-MATCH	A375_MHC_IP_R2	2		2	425.726521	849.438489	-0.19865	-8.4572E-05	-0.69136	-0.00029433	-0.89002	-0.0003789	425.72637867129913	41.722	0.40901	42.496	42.3	42.709	0.77451	-0.033058	-0.00033583	NaN	26.341	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1639000	+		14007	17778	10188	10265							0.007747456685592624
FAWYRARL	8	Unmodified	_FAWYRARL_					0	0	0			REV__ENST00000303521.10_1_15:76673691-77134263:-|nuORF	REV__ENST00000303521.10_1_15:76673691-77134263:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	542.1973876953125	2	541.798343	1081.58213	-0.73935	-0.00040058	-0.99529	-0.00053925	-1.7346	-0.00093982	541.7980778866562	87.51	0.80907	88.242	87.761	88.57	0.7318					27	15	2	0	0	0	0.73517	1	33311	33311		42.968	3.0183	1	3440700	+		14008	19208	10189	10266	13637	13637					0.04460592499503946
FAWYRARL	8	Unmodified	_FAWYRARL_					0	0	0			REV__ENST00000303521.10_1_15:76673691-77134263:-|nuORF	REV__ENST00000303521.10_1_15:76673691-77134263:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	541.798343	1081.58213	-0.53192	-0.00028819	-1.4725	-0.00079781	-2.0044	-0.001086	541.7977779488948	88.337	0.71426	88.337	87.898	88.612	0	0.047956	-0.00014638	NaN	34.187	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3252600	+		14009	19208	10189	10266							0.04460592499503946
FAYDGKDYL	9	Unmodified	_FAYDGKDYL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6556396484375	2	546.25584	1090.49713	-0.65708	-0.00035893	0.4263	0.00023287	-0.23078	-0.00012606	546.2559434387069	68.555	0.60986	68.555	68.26	68.869	0					33	11	4	0	0	0	0.16595	1	24860	24860		53.404	24.322	1	6256600			14010	9462	10190	10267	13638	13638					-0.04450242547613925
FAYDGKDYL	9	Unmodified	_FAYDGKDYL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-SECPEP	A375_MHC_IP_R2	2	546.6555786132812	2	546.25584	1090.49713	-0.70686	-0.00038613	0.15455	8.4425E-05	-0.55231	-0.0003017	546.2558843546304	67.977	0.71211	68.712	68.409	69.121	0.73512					32	13	3	0	0	0	0.13208	1	25742	25742		66.457	30.33	1	4363000			14011	9462	10190	10267	13639	13639					-0.04450242547613925
FAYERLSHF	9	Unmodified	_FAYERLSHF_					0	0	0		ENSG00000213614|ENST00000268097|HEXA;ENST00000569116.1_1_15:72637785-72638034:-|nuORF;ENST00000564677.5_1_15:72636420-72638034:-|nuORF	ENSG00000213614|ENST00000268097|HEXA	ENSG00000213614|ENST00000268097|HEXA	MULTI-MSMS	A375_MHC_IP_R1	1	390.92962646484375	3	390.529458	1168.56654	0.23284	9.093E-05	0.17192	6.714E-05	0.40476	0.00015807	390.5294436645799	56.929	0.66286	56.929	56.701	57.364	0					24	12	3	0	0	0	0.25114	1	20404	20404		34.222	11.564	1	4796300			14012	9574	10191	10268	13640	13640					-0.010997388081932513
FAYERLSHF	9	Unmodified	_FAYERLSHF_					0	0	0		ENSG00000213614|ENST00000268097|HEXA;ENST00000569116.1_1_15:72637785-72638034:-|nuORF;ENST00000564677.5_1_15:72636420-72638034:-|nuORF	ENSG00000213614|ENST00000268097|HEXA	ENSG00000213614|ENST00000268097|HEXA	MULTI-MSMS	A375_MHC_IP_R2	2	390.9296569824219	3	390.529458	1168.56654	-0.40248	-0.00015718	0.09953	3.887E-05	-0.30295	-0.00011831	390.5294483066341	56.136	0.56135	56.886	56.591	57.152	0.75015					21	10	3	0	0	0	0.12591	1	21195	21195		46.022	22.233	1	5517800			14013	9574	10191	10268	13641	13641					-0.010997388081932513
FAYPAIRYL	9	Unmodified	_FAYPAIRYL_					0	0	0		ENST00000496863.5_1_1:155679570-155695280:+|nuORF;ENST00000471523.1_1_1:155679570-155695881:+|nuORF;ENST00000462002.5_1_1:155679570-155696073:+|nuORF;nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3	ENST00000496863.5_1_1:155679570-155695280:+|nuORF	ENST00000496863.5_1_1:155679570-155695280:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	557.7080688476562	2	557.30821	1112.60187	-0.48829	-0.00027213	0.51538	0.00028722	0.027089	1.5097E-05	557.3084448125182	98.219	0.86394	98.219	97.743	98.607	0					47	16	4	0	0	0	0.37663	1	36036	36036		48.346	48.346	1	10996000			14014	4437	10192	10269	13642	13642					0.050069237196112226
FAYPAIRYL	9	Unmodified	_FAYPAIRYL_					0	0	0		ENST00000496863.5_1_1:155679570-155695280:+|nuORF;ENST00000471523.1_1_1:155679570-155695881:+|nuORF;ENST00000462002.5_1_1:155679570-155696073:+|nuORF;nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3	ENST00000496863.5_1_1:155679570-155695280:+|nuORF	ENST00000496863.5_1_1:155679570-155695280:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	557.7076416015625	2	557.30821	1112.60187	-0.92882	-0.00051764	0.54017	0.00030104	-0.38866	-0.0002166	557.3084000558516	97.365	0.81384	98.121	97.72	98.534	0.75586					41	15	4	0	0	0	0.69381	1	36879	36879		28.487	17.663	1	10152000			14015	4437	10192	10269	13643	13643					0.050069237196112226
FAYYRDLVF	9	Unmodified	_FAYYRDLVF_					0	0	0		ENSG00000143315|ENST00000368090|PIGM	ENSG00000143315|ENST00000368090|PIGM	ENSG00000143315|ENST00000368090|PIGM	MULTI-MSMS	A375_MHC_IP_R1	1	597.7037963867188	2	597.303124	1192.5917	-0.35531	-0.00021223	0.4282	0.00025577	0.072894	4.354E-05	597.3028678698212	104.63	0.70782	104.63	104.24	104.94	0					27	13	3	0	0	0	0.22164	1	38374	38374		45.74	33.208	1	2926500			14016	5367	10193	10270	13644	13644					0.00310315994352095
FAYYRDLVF	9	Unmodified	_FAYYRDLVF_					0	0	0		ENSG00000143315|ENST00000368090|PIGM	ENSG00000143315|ENST00000368090|PIGM	ENSG00000143315|ENST00000368090|PIGM	MULTI-MATCH	A375_MHC_IP_R2	2		2	597.303124	1192.5917	-0.52369	-0.0003128	0.55495	0.00033148	0.031267	1.8676E-05	597.3031393109103	103.78	0.55894	104.54	104.14	104.7	0.76428	-0.042663	6.2427E-05	NaN	45.74	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4103600			14017	5367	10193	10270							0.00310315994352095
FCAHFSMFF	9	Unmodified	_FCAHFSMFF_					0	0	0			REV__ENST00000587084.5_1_19:32850301-32850421:+|nuORF	REV__ENST00000587084.5_1_19:32850301-32850421:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	379.89434814453125	3	379.494591	1135.46194	0.26434	0.00010032	-0.60055	-0.0002279	-0.33621	-0.00012759	379.49439260961526	64.98	0.50638	64.98	64.75	65.257	0					14	9	2	0	0	0	0.64808	1	23534	23534		7.609	0.50723	1	2199600	+		14018	26396	10194	10271	13645	13645					-0.10036899880765304
FCCCCCCCCCC	11	Unmodified	_FCCCCCCCCCC_					0	0	0		ENST00000606389.5_1_2:69691306-69691378:-|nuORF	REV__ENST00000606389.5_1_2:69691306-69691378:-|nuORF	REV__ENST00000606389.5_1_2:69691306-69691378:-|nuORF	MSMS	A375_MHC_IP_R1	1	598.6723022460938	2	598.592688	1195.17082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.269	1	72.269	71.769	72.769	0								0	0	0	0.1636	1	26288	26288		0	0	1				14019	26540	10195	10272	13646	13646					-0.41895519825493466
FCCCCCCL	8	Unmodified	_FCCCCCCL_					0	0	0			REV__ENST00000432246.1_1_10:93557707-93557869:-|nuORF	REV__ENST00000432246.1_1_10:93557707-93557869:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	897.4732666015625	1	897.225426	896.218149	0.20366	0.00018273	2.4617	0.0022087	2.6653	0.0023914	897.2296739902206	113.02	0.75822	113.02	112.53	113.29	0					23	14	2	0	0	0	0.972	1	41416	41416		0.79363	0	1	3450200	+		14020	24713	10196	10273	13647	13647					-0.23411089904686833
FCCCGAAC	8	Unmodified	_FCCCGAAC_					0	0	0			REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	MSMS	A375_MHC_IP_R2	2	388.74200439453125	2	389.11298	776.211408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.206	1	15.794	15.294	16.294	0.58774								0	0	0	0.16876	1	4553	4553		0	0	1		+		14021	25073	10197	10274	13648	13648					-0.18564943469402806
FCCCGAAC	8	Unmodified	_FCCCGAAC_					0	0	0			REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	MSMS	A375_MHC_IP_R2	2	388.74169921875	2	389.11298	776.211408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.488	1	18.084	17.584	18.584	0.59616								0	0	0	0.16876	1	5145	5145		0	0	1		+		14022	25073	10197	10274	13649	13649					-0.18564943469402806
FCCCLCCCCY	10	Unmodified	_FCCCLCCCCY_					0	0	0			REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	MSMS	A375_MHC_IP_R2	2	582.1798095703125	2	582.152608	1162.29066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.694	1	44.463	43.963	44.963	0.7691								0	0	0	0.15628	1	16285	16285		0.45834	0	1		+		14023	17145	10198	10275	13650	13650					-0.28399123893427713
FCCCLCCCCYC	11	Unmodified	_FCCCLCCCCYC_					0	0	0			REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	MSMS	A375_MHC_IP_R2	2	633.6974487304688	2	633.6572	1265.29985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.643	1	87.376	86.876	87.876	0.733								0	0	0	0.1636	1	32950	32950		0	0	1		+		14024	17145	10199	10276	13651	13651					-0.3221909859939842
FCCSCVAGYT	10	Unmodified	_FCCSCVAGYT_					0	0	0		ENSG00000116962|ENST00000264187|NID1;nc|ENSG00000116962|P14543-2|NID1	ENSG00000116962|ENST00000264187|NID1	ENSG00000116962|ENST00000264187|NID1	MULTI-SECPEP	A375_MHC_IP_R1	1	527.1212158203125	2	527.195556	1052.37656	-0.70917	-0.00037387	1.6203	0.0008542	0.9111	0.00048033	527.1963533376695	86.249	0.40606	86.249	86.121	86.527	0					10	7	2	0	0	0	0.91909	1	31679	31679		9.3831	5.0539	1	1400700			14025	3446	10200	10277	13652	13652					-0.14753433128748838
FCDDEDDED	9	Unmodified	_FCDDEDDED_					0	0	0			REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	MSMS	A375_MHC_IP_R1	1	551.6607666015625	2	551.661309	1101.30806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.87	1	117.87	117.37	118.37	0								0	0	0	0.15486	1	43333	43333		0	0	1		+		14026	17177	10201	10278	13653	13653					-0.23853727693904148
FCFLRRSGLYY	11	Unmodified	_FCFLRRSGLYY_					0	0	0		ENST00000473071.1_1_17:37899536-37900469:+|nuORF;nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-4|GRB7;ENSG00000141738|ENST00000309156|GRB7;nc|ENSG00000141738|Q14451-3|GRB7	ENST00000473071.1_1_17:37899536-37900469:+|nuORF	ENST00000473071.1_1_17:37899536-37900469:+|nuORF	MSMS	A375_MHC_IP_R1	1	475.4741516113281	3	475.576302	1423.70708	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.757	1	30.757	30.257	31.257	0								0	0	0	0.16305	1	9803	9803		2.8433	1.3882	1				14027	5271	10202	10279	13654	13654					0.012170968537475346
FCGGIKYLY	9	Unmodified	_FCGGIKYLY_					0	0	0		tr|U7SVR0|U7SVR0_FUSNUFlavodoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01309PE=3SV=1	tr|U7SVR0|U7SVR0_FUSNUFlavodoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01309PE=3SV=1	tr|U7SVR0|U7SVR0_FUSNUFlavodoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01309PE=3SV=1	MSMS	A375_MHC_IP_R2	2	532.2239379882812	2	532.267696	1062.52084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.299	1	57.05	56.55	57.55	0.75015								0	0	0	0.15283	1	21279	21279		16.942	1.0951	1				14028	29795	10203	10280	13655	13655					-0.007921003148112504
FCKGRTLHSF	10	Unmodified	_FCKGRTLHSF_					0	0	0		nc|ENSG00000141068|Q8IVT5-2|KSR1;nc|ENSG00000141068|Q8IVT5|KSR1;ENSG00000141068|ENST00000644974|KSR1;nc|ENSG00000141068|Q8IVT5-4|KSR1;nc|ENSG00000141068|Q8IVT5-3|KSR1	nc|ENSG00000141068|Q8IVT5-2|KSR1	nc|ENSG00000141068|Q8IVT5-2|KSR1	MULTI-SECPEP	A375_MHC_IP_R1	1	398.6205749511719	3	399.206209	1194.5968	-0.32267	-0.00012881	1.377	0.00054971	1.0543	0.00042089	399.20685480786346	27.245	0.40408	27.245	27.027	27.432	0					10	7	2	0	0	0	0.93615	1	8165	8165		0.69767	0.69767	1	1436100			14029	5211	10204	10281	13656	13656					0.007282965853391943
FCPEDQILFN	10	Unmodified	_FCPEDQILFN_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	MSMS	A375_MHC_IP_R2	2	613.21826171875	2	613.281531	1224.54851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.42	1	44.192	43.692	44.692	0.7724								0	0	0	0.14555	1	16176	16176		26.268	3.5319	1				14030	3519	10205	10282	13657	13657					-0.054782418452077764
FCQLFVYGGC	10	Unmodified	_FCQLFVYGGC_					0	0	0		SPINT2|p.S62F|1|0.27|ENSG00000167642|chr19:38283705-38283705|C/T|missense_variant	SPINT2|p.S62F|1|0.27|ENSG00000167642|chr19:38283705-38283705|C/T|missense_variant	SPINT2|p.S62F|1|0.27|ENSG00000167642|chr19:38283705-38283705|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	569.147705078125	2	568.748813	1135.48307	-0.15344	-8.727E-05	-0.74133	-0.00042163	-0.89478	-0.0005089	568.7482755831282	46.844	0.81553	47.605	47.206	48.022	0.76128					39	15	4	0	0	0	0.69306	1	17518	17518		13.906	13.906	1	15560000			14031	29236	10206	10283	13658	13658					-0.07924934571906306
FCQLFVYGGC	10	Unmodified	_FCQLFVYGGC_					0	0	0		SPINT2|p.S62F|1|0.27|ENSG00000167642|chr19:38283705-38283705|C/T|missense_variant	SPINT2|p.S62F|1|0.27|ENSG00000167642|chr19:38283705-38283705|C/T|missense_variant	SPINT2|p.S62F|1|0.27|ENSG00000167642|chr19:38283705-38283705|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	568.748813	1135.48307	-0.27485	-0.00015632	-0.64287	-0.00036563	-0.91773	-0.00052196	568.7483539336968	47.483	0.91103	47.483	47.211	48.122	0	-0.061128	6.3014E-05	NaN	13.906	46	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16682000			14032	29236	10206	10283							-0.07924934571906306
FCQLFVYGGC	10	Unmodified	_FCQLFVYGGC_					0	0	0		SPINT2|p.S62F|1|0.27|ENSG00000167642|chr19:38283705-38283705|C/T|missense_variant	SPINT2|p.S62F|1|0.27|ENSG00000167642|chr19:38283705-38283705|C/T|missense_variant	SPINT2|p.S62F|1|0.27|ENSG00000167642|chr19:38283705-38283705|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	568.748813	1135.48307	-0.15344	-8.727E-05	-0.74133	-0.00042163	-0.89478	-0.0005089	568.7482755831282	46.844	0.81553	47.605	47.206	48.022	0.76128	0.061128	-4.8984E-05	NaN	13.906	39	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15560000			14033	29236	10206	10283							-0.07924934571906306
FCRVILIGLFI	11	Unmodified	_FCRVILIGLFI_					0	0	0			REV__ENSG00000205279|ENST00000379445|CTXN3	REV__ENSG00000205279|ENST00000379445|CTXN3	MULTI-MSMS	A375_MHC_IP_R2	2	1294.1748046875	1	1293.77516	1292.76789	0.4642	0.00060057	-0.45682	-0.00059103	0.0073748	9.5413E-06	1293.7743861433921	149.32	1.7628	149.34	148.07	149.84	0.01825					120	52	3	0	0	0	0.73897	1	57848	57848		0.35063	0.081612	1	451720	+		14034	22566	10207	10284	13659	13659					0.13321233903957364
FCSSPPALK	9	Unmodified	_FCSSPPALK_					0	0	0		CON__Q29RQ1	CON__Q29RQ1	CON__Q29RQ1	MULTI-MSMS	A375_MHC_IP_R2	2	475.6444091796875	2	475.244221	948.473888	-0.69108	-0.00032843	1.2291	0.00058413	0.53804	0.0002557	475.2444712607365	40.722	0.45777	41.496	41.183	41.641	0.77451					13	8	2	0	0	0	0.53367	1	15092	15092		18.146	0	1	1783800		+	14035	609	10208	10285	13660	13660					-0.0024095986592556073
FCTDCCPDC	9	Unmodified	_FCTDCCPDC_					0	0	0		ENSG00000270601|ENST00000622421|PRAMEF5;ENSG00000232423|ENST00000376189|PRAMEF6	ENSG00000270601|ENST00000622421|PRAMEF5	ENSG00000270601|ENST00000622421|PRAMEF5	MSMS	A375_MHC_IP_R1	1	503.6955871582031	2	503.642299	1005.27004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.67	1	142.67	142.17	143.17	0								0	0	0	0.15486	1	54742	54742		0	0	1				14036	9729	10209	10286	13661	13661					-0.2323793168558268
FCVHHCKGCKY	11	Unmodified	_FCVHHCKGCKY_					0	0	0			REV__ENSG00000177853|ENST00000316045|ZNF518A	REV__ENSG00000177853|ENST00000316045|ZNF518A	MULTI-SECPEP	A375_MHC_IP_R2	2	441.63330078125	3	442.196439	1323.56749	-0.30331	-0.00013412	-0.9765	-0.00043181	-1.2798	-0.00056593	442.196015929163	27.537	0.35447	28.216	28.047	28.401	0.67857					15	6	3	0	0	0	0.99883	1	9387	9387		1.2148	1.12	1	2301700	+		14037	21473	10210	10287	13662	13662					-0.08135307026805094
FCVWRKKPLKI	11	Unmodified	_FCVWRKKPLKI_					0	0	0			REV__ENST00000562448.1_1_16:8895761-8900277:+|nuORF	REV__ENST00000562448.1_1_16:8895761-8900277:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	709.9609985351562	2	709.428667	1416.84278	-0.5471	-0.00038813	0.45327	0.00032156	-0.093838	-6.6571E-05	709.4288524379023	149.7	0.95453	149.72	149.06	150.01	0.01825					89	46	2	0	0	0	0.73934	1	57969	57969		0	0	1	151190	+		14038	26190	10211	10288	13663	13663					0.15103416435204053
FCVWRKKPLKI	11	Unmodified	_FCVWRKKPLKI_					0	0	0			REV__ENST00000562448.1_1_16:8895761-8900277:+|nuORF	REV__ENST00000562448.1_1_16:8895761-8900277:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	708.8572998046875	2	709.428667	1416.84278	-0.5471	-0.00038813	0.45327	0.00032156	-0.093838	-6.6571E-05	709.4288524379023	149.7	0.95453	149.72	149.06	150.01	0.01825					89	46	2	0	0	0	1.0015	1	58177	58177		0	0	1	151190	+		14039	26190	10211	10288	13664	13664					0.15103416435204053
FDACDCDC	8	Unmodified	_FDACDCDC_					0	0	0			REV__ENSG00000213139|ENST00000307944|CRYGS	REV__ENSG00000213139|ENST00000307944|CRYGS	MULTI-MSMS	A375_MHC_IP_R1	1	891.3070068359375	1	891.231751	890.224475	-0.13001	-0.00011587	-1.6175	-0.0014416	-1.7476	-0.0015575	891.2318232594461	63.353	1.6896	63.353	62.249	63.939	0					45	32	2	0	0	0	0.77861	1	22625	22625		0	0	1	1046000	+		14040	22615	10212	10289	13665	13665					-0.22502833876330897
FDACDCDC	8	Unmodified	_FDACDCDC_					0	0	0			REV__ENSG00000213139|ENST00000307944|CRYGS	REV__ENSG00000213139|ENST00000307944|CRYGS	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	891.231751	890.224475	-0.13001	-0.00011587	-1.6175	-0.0014416	-1.7476	-0.0015575	891.2318232594461	63.353	1.6896	63.353	62.249	63.939	0	0	0	NaN	0	45	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1046000	+		14041	22615	10212	10289							-0.22502833876330897
FDAYALRRQKY	11	Unmodified	_FDAYALRRQKY_					0	0	0		nc|ENSG00000187045|Q8IU80-2|TMPRSS6;ENSG00000187045|ENST00000676104|TMPRSS6;nc|ENSG00000187045|Q8IU80|TMPRSS6;nc|ENSG00000187045|Q8IU80-5|TMPRSS6	nc|ENSG00000187045|Q8IU80-2|TMPRSS6	nc|ENSG00000187045|Q8IU80-2|TMPRSS6	MULTI-SECPEP	A375_MHC_IP_R1	1	478.1334533691406	3	477.589487	1429.74663	-0.28219	-0.00013477	-0.10499	-5.014E-05	-0.38718	-0.00018491	477.58945742739974	38.704	0.20329	38.704	38.577	38.78	0					5	3	2	0	0	0	0.99676	1	13150	13150		4.7159	2.0847	1	1092400			14042	8802	10213	10290	13666	13666					0.04894940128770031
FDCHVGLCDPV	11	Unmodified	_FDCHVGLCDPV_					0	0	0			REV__ENSG00000105255|ENST00000221856|FSD1	REV__ENSG00000105255|ENST00000221856|FSD1	MULTI-SECPEP	A375_MHC_IP_R1	1	603.1287841796875	2	602.759909	1203.50526	-0.5355	-0.00032278	-0.74891	-0.00045141	-1.2844	-0.00077419	603.2626597966437	91.334	0.70975	91.334	90.794	91.503	0					19	13	2	0	0	0	0.98591	1	33562	33562		5.7319	0	1	2669300	+		14043	17365	10214	10291	13667	13667					-0.08834754894178332
FDDNEEKY	8	Unmodified	_FDDNEEKY_					0	0	0			REV__HRG|p.S174F|1|0.17|ENSG00000113905|chr3:186671752-186671752|C/T|missense_variant	REV__HRG|p.S174F|1|0.17|ENSG00000113905|chr3:186671752-186671752|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	530.6165771484375	2	530.216911	1058.41927	-0.86079	-0.00045641	0.34811	0.00018457	-0.51269	-0.00027184	530.2169451449543	135.51	0.30571	135.51	135.39	135.69	0					9	5	2	0	0	0	0.972	1	52256	52256		11.64	0	1	4288900	+		14044	17808	10215	10292	13668	13668					-0.10760300203651241
FDDSIISACGY	11	Unmodified	_FDDSIISACGY_					0	0	0		ENSG00000177483|ENST00000316997|RBM44	ENSG00000177483|ENST00000316997|RBM44	ENSG00000177483|ENST00000316997|RBM44	MSMS	A375_MHC_IP_R2	2	595.7459716796875	2	595.755346	1189.49614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.654	1	96.405	95.905	96.905	0.75045								0	0	0	0.16297	1	36331	36331		3.2813	0	1				14045	8087	10216	10293	13669	13669					-0.09102824978822355
FDEDAEPR	8	Unmodified	_FDEDAEPR_					0	0	0		nc|ENSG00000078808|Q9BRK5-4|SDF4;SDF4|p.P211Lfs*6|1|0.31|ENSG00000078808|chr1:1218873-1218873|G/-|frameshift_variant;nc|ENSG00000078808|Q9BRK5-3|SDF4;nc|ENSG00000078808|Q9BRK5-6|SDF4;ENSG00000078808|ENST00000360001|SDF4;nc|ENSG00000078808|Q9BRK5|SDF4	nc|ENSG00000078808|Q9BRK5-4|SDF4	nc|ENSG00000078808|Q9BRK5-4|SDF4	MULTI-SECPEP	A375_MHC_IP_R1	1	489.6227722167969	2	489.711796	977.40904	-0.12528	-6.135E-05	-0.76447	-0.00037437	-0.88975	-0.00043572	489.7113614287284	82.291	0.76131	82.291	81.961	82.722	0					23	14	2	0	0	0	0.92636	1	30128	30128		16.942	1.0951	1	4287500			14046	1683	10217	10294	13670	13670					-0.08056863138244807
FDEERHIRSL	10	Unmodified	_FDEERHIRSL_					0	0	0			REV__ENST00000532894.1_1_17:72954660-72955999:-|nuORF	REV__ENST00000532894.1_1_17:72954660-72955999:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	434.6557922363281	3	434.558076	1300.6524	-0.4977	-0.00021628	-1.054	-0.00045804	-1.5517	-0.00067432	434.55778339982913	26.447	0.45524	26.447	26.221	26.677	0					17	8	3	0	0	0	0.93041	1	7842	7842		7.9454	2.4221	1	3037100	+		14047	20797	10218	10295	13671	13671					0.014098013066586645
FDEIKEINY	9	Unmodified	_FDEIKEINY_					0	0	0			REV__tr|U7SE90|U7SE90_FUSNUCRISPRsystemCmsendoribonucleaseCsm3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02353PE=3SV=1	REV__tr|U7SE90|U7SE90_FUSNUCRISPRsystemCmsendoribonucleaseCsm3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02353PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	585.7605590820312	2	585.787504	1169.56045	-0.0073557	-4.3089E-06	0.090283	5.2887E-05	0.082928	4.8578E-05	585.7875696667985	108.86	0.81082	108.86	108.41	109.22	0					41	15	4	0	0	0	0.29981	1	40040	40040		30.637	1.555	1	10420000	+		14048	28157	10219	10296	13672	13672					-0.017543018303967983
FDELHSSRNF	10	Unmodified	_FDELHSSRNF_					0	0	0		tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	626.6951904296875	2	626.291276	1250.568	-0.45862	-0.00028723	0.34099	0.00021356	-0.11763	-7.367E-05	626.7906957358147	70.855	3.0531	70.855	68.209	71.262	0					87	59	3	0	0	0	0.54492	1	25764	25764		24.991	1.2012	1	6946900			14049	29743	10220	10297	13673	13673					-0.047261495101110995
FDFDGESLWY	10	Unmodified	_FDFDGESLWY_					0	0	0			REV__ENST00000420969.1_1_2:162362657-162362750:-|nuORF	REV__ENST00000420969.1_1_2:162362657-162362750:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	639.8389282226562	2	639.769311	1277.52407	-0.83435	-0.00053379	2.0966	0.0013413	1.2622	0.00080753	640.2737361055172	68.489	1.4671	68.489	67.603	69.07	0					36	28	2	0	0	0	0.71118	1	24967	24967		7.2892	1.0834	1	2675400	+		14050	24578	10221	10298	13674	13674					-0.10359178727094331
FDFRHGDLTVY	11	Unmodified	_FDFRHGDLTVY_					0	0	0			REV__nc|ENSG00000275395|Q9Y6R7|FCGBP	REV__nc|ENSG00000275395|Q9Y6R7|FCGBP	MSMS	A375_MHC_IP_R1	1	685.2896118164062	2	685.330402	1368.64625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.286	1	86.286	85.786	86.786	0								0	0	0	0.16297	1	31635	31635		3.2813	0	1		+		14051	27543	10222	10299	13675	13675					-0.02332716924865963
FDFRPKPDPY	10	Unmodified	_FDFRPKPDPY_					0	0	0		ENSG00000102805|ENST00000377453|CLN5	ENSG00000102805|ENST00000377453|CLN5	ENSG00000102805|ENST00000377453|CLN5	MULTI-SECPEP	A375_MHC_IP_R2	2	428.6007385253906	3	427.880267	1280.61897	-0.46229	-0.0001978	2.3161	0.000991	1.8538	0.0007932	428.21500737389016	23.763	0.25337	24.393	24.232	24.485	0.63015					6	4	2	0	0	0	0.93799	1	7672	7672		0.62683	0	1	1470600			14052	2395	10223	10300	13676	13676					-0.01011200465222828
FDGLKVCD	8	Unmodified	_FDGLKVCD_					0	0	0			REV__nc|ENSG00000169398|Q05397-7|PTK2	REV__nc|ENSG00000169398|Q05397-7|PTK2	MSMS	A375_MHC_IP_R1	1	448.6575927734375	2	448.712753	895.410954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.433	1	36.433	35.933	36.933	0								0	0	0	0.16876	1	12195	12195		18.135	3.5533	1		+		14053	20929	10224	10301	13677	13677					-0.04093525653979668
FDHRYLRK	8	Unmodified	_FDHRYLRK_					0	0	0		ENSG00000180251|ENST00000295269|SLC9A4	ENSG00000180251|ENST00000295269|SLC9A4	ENSG00000180251|ENST00000295269|SLC9A4	MULTI-SECPEP	A375_MHC_IP_R2	2	379.5469665527344	3	378.87708	1133.60941	0.020886	7.9131E-06	1.2948	0.00049056	1.3157	0.00049848	378.8771607022616	27.103	0.307	27.782	27.638	27.945	0.67857					7	5	2	0	0	0	0.972	1	9170	9170		3.5965	0.52423	1	850610			14054	8286	10225	10302	13678	13678					0.04795076039886226
FDKGGQSSNF	10	Unmodified	_FDKGGQSSNF_					0	0	0			REV__ENSG00000186230|ENST00000334181|ZNF749	REV__ENSG00000186230|ENST00000334181|ZNF749	MULTI-MSMS	A375_MHC_IP_R1	1	543.679443359375	2	543.74617	1085.47779	-0.56292	-0.00030608	-0.6053	-0.00032913	-1.1682	-0.00063521	543.7456810191525	63.778	0.61282	63.778	63.477	64.09	0					21	11	2	0	0	0	0.69306	1	22979	22979		13.906	0.86358	1	2848200	+		14055	21957	10226	10303	13679	13679					-0.061531988385240766
FDKGGQSSNF	10	Unmodified	_FDKGGQSSNF_					0	0	0			REV__ENSG00000186230|ENST00000334181|ZNF749	REV__ENSG00000186230|ENST00000334181|ZNF749	MULTI-MSMS	A375_MHC_IP_R2	2	543.6798095703125	2	543.74617	1085.47779	-0.77032	-0.00041886	-0.64893	-0.00035285	-1.4192	-0.00077171	543.7458060097092	63.12	0.5587	63.863	63.634	64.193	0.74263					19	10	2	0	0	0	0.69306	1	23847	23847		13.906	1.3745	1	2383600	+		14056	21957	10226	10303	13680	13680					-0.061531988385240766
FDKKSRSSLKQ	11	Unmodified	_FDKKSRSSLKQ_					0	0	0		ENST00000361828.6_1_3:193413749-193413833:+|nuORF	ENST00000361828.6_1_3:193413749-193413833:+|nuORF	ENST00000361828.6_1_3:193413749-193413833:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	662.7719116210938	2	662.372601	1322.73065	-0.81591	-0.00054043	-0.64047	-0.00042423	-1.4564	-0.00096466	662.3720949004893	132.54	1.121	132.73	132.25	133.37	0.18953					55	21	3	0	0	0	0.73698	1	52065	52065		4.897	4.897	1	14254000			14057	11051	10227	10304	13681	13681					0.08219233891895783
FDKTRKIEAR	10	Unmodified	_FDKTRKIEAR_					0	0	0		nc|ENSG00000129515|Q9UNH7-2|SNX6;ENST00000556162.5_1_14:35032330-35073396:-|nuORF;ENSG00000129515|ENST00000362031|SNX6	nc|ENSG00000129515|Q9UNH7-2|SNX6	nc|ENSG00000129515|Q9UNH7-2|SNX6	MULTI-MSMS	A375_MHC_IP_R2	2	632.7616577148438	2	632.362036	1262.70952	-0.77998	-0.00049323	-0.60231	-0.00038087	-1.3823	-0.00087411	632.3615530699533	131.53	0.86119	131.72	131.49	132.35	0.18953					30	16	2	0	0	0	0.71466	1	51950	51950		5.7319	0.43497	1	35976000			14058	4194	10228	10305	13682	13682					0.08867268583003352
FDKWQRRRWLR	11	Unmodified	_FDKWQRRRWLR_					0	0	0		nc|ENSG00000105618|Q8WWY3-2|PRPF31	nc|ENSG00000105618|Q8WWY3-2|PRPF31	nc|ENSG00000105618|Q8WWY3-2|PRPF31	MSMS	A375_MHC_IP_R2	2	823.962646484375	2	823.960575	1645.9066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.29	1	110.04	109.54	110.54	0.74684								0	0	0	0.16352	1	41248	41248		1.1933	0.88631	1				14059	14526	10229	10306	13683	13683					0.10947912916481073
FDLKKNISI	9	Unmodified	_FDLKKNISI_					0	0	0		ENST00000504323.5_1_5:145524050-145524254:-|nuORF	ENST00000504323.5_1_5:145524050-145524254:-|nuORF	ENST00000504323.5_1_5:145524050-145524254:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	538.70556640625	2	539.318774	1076.623	-0.93926	-0.00050656	0.40069	0.0002161	-0.53858	-0.00029046	539.8207664040874	55.487	0.45545	56.238	55.933	56.388	0.75075					10	8	2	0	0	0	0.65527	1	20955	20955		17.113	1.2657	1	983880			14060	12819	10230	10307	13684	13684					0.08774889028472899
FDNIKIWFNI	10	Unmodified	_FDNIKIWFNI_					0	0	0			REV__tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1	REV__tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	437.63653564453125	3	437.236163	1308.68666	-0.28816	-0.00012599	1.3099	0.00057271	1.0217	0.00044672	437.23651429413366	130.94	0.76285	131.16	130.81	131.57	0.21419					23	14	2	0	0	0	0.94918	1	51478	51478		1.7423	1.7423	1	5188900	+		14061	28490	10231	10308	13685	13685					0.044662494655540286
FDPLRQFR	8	Unmodified	_FDPLRQFR_					0	0	0			REV__S100PBP|p.S406L|1|0.57|ENSG00000116497|chr1:32856028-32856028|C/T|missense_variant	REV__S100PBP|p.S406L|1|0.57|ENSG00000116497|chr1:32856028-32856028|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	360.25262451171875	3	360.197931	1077.57196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.687	1	22.687	22.187	23.187	0								0	0	0	0.16876	1	6117	6117		13.042	4.2971	1		+		14062	17956	10232	10309	13686	13686					0.03627984774266224
FDPSVLKLH	9	Unmodified	_FDPSVLKLH_					0	0	0		SERTAD1|p.L48P|1|0.22|ENSG00000197019|chr19:40423404-40423404|A/G|missense_variant	SERTAD1|p.L48P|1|0.22|ENSG00000197019|chr19:40423404-40423404|A/G|missense_variant	SERTAD1|p.L48P|1|0.22|ENSG00000197019|chr19:40423404-40423404|A/G|missense_variant	MSMS	A375_MHC_IP_R2	2	352.60089111328125	3	352.53432	1054.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.121	1	25.765	25.265	26.265	0.64368								0	0	0	0.15486	1	8355	8355		5.7834	0.73591	1				14063	29140	10233	10310	13687	13687					0.056023333399252806
FDQANKLKKT	10	Unmodified	_FDQANKLKKT_					0	0	0		nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2	nc|ENSG00000119139|Q9UDY2-6|TJP2	nc|ENSG00000119139|Q9UDY2-6|TJP2	MULTI-SECPEP	A375_MHC_IP_R1	1	597.1849975585938	2	596.837862	1191.66117	-0.44234	-0.00026401	1.5549	0.000928	1.1125	0.00066399	596.8382550764769	58.148	0.40462	58.148	57.923	58.328	0					13	7	2	0	0	0	0.93578	1	20831	20831		10.074	8.4213	1	942400			14064	14565	10234	10311	13688	13688					0.073007749431099
FDQANKLKKT	10	Unmodified	_FDQANKLKKT_					0	0	0		nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2	nc|ENSG00000119139|Q9UDY2-6|TJP2	nc|ENSG00000119139|Q9UDY2-6|TJP2	MULTI-MATCH	A375_MHC_IP_R2	2		2	596.837862	1191.66117	-0.97451	-0.00058162	0.24489	0.00014616	-0.72962	-0.00043546	596.8378899993448	57.02	0.30733	57.77	57.662	57.969	0.75014	-0.18883	-0.00023334	NaN	10.074	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	988490			14065	14565	10234	10311							0.073007749431099
FDQDEETCW	9	Unmodified	_FDQDEETCW_					0	0	0		NR2C2AP|p.L30F|1|0.27|ENSG00000184162|chr19:19202832-19202832|G/A|missense_variant;ENSG00000184162|ENST00000331552|NR2C2AP;ENST00000539693.1_1_19:19312736-19313791:-|nuORF;nc|ENSG00000184162|Q86WQ0-2|NR2C2AP	NR2C2AP|p.L30F|1|0.27|ENSG00000184162|chr19:19202832-19202832|G/A|missense_variant	NR2C2AP|p.L30F|1|0.27|ENSG00000184162|chr19:19202832-19202832|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	586.6494750976562	2	586.713679	1171.4128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.089	1	92.828	92.328	93.328	0.73902								0	0	0	0.15486	1	35022	35022		7.9102	0	1				14066	8555	10235	10312	13689	13689					-0.16604561426697728
FDRHVPIPPIY	11	Unmodified	_FDRHVPIPPIY_					0	0	0			REV__nc|ENSG00000077235|Q12789-3|GTF3C1	REV__nc|ENSG00000077235|Q12789-3|GTF3C1	MSMS	A375_MHC_IP_R2	2	677.6771850585938	2	677.36933	1352.72411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.919	1	97.675	97.175	98.175	0.75586								0	0	0	0.16249	1	36790	36790		5.7319	2.1354	1		+		14067	27118	10236	10313	13690	13690					0.06185340731190081
FDRRIGFW	8	Unmodified	_FDRRIGFW_					0	0	0			REV__ENSG00000226479|ENST00000426077|TMEM185B	REV__ENSG00000226479|ENST00000426077|TMEM185B	MULTI-SECPEP	A375_MHC_IP_R2	2	548.9053955078125	2	548.787976	1095.5614	-0.84036	-0.00046118	1.3742	0.00075415	0.53386	0.00029298	548.7885510621553	39.419	0.45667	40.194	40.016	40.473	0.77451					13	8	2	0	0	0	0.94479	1	14560	14560		8.5933	0	1	6699400	+		14068	22722	10237	10314	13691	13691					0.017440021198581235
FDSDYSRRY	9	Unmodified	_FDSDYSRRY_					0	0	0			REV__nc|ENSG00000163071|Q8TC71-2|SPATA18	REV__nc|ENSG00000163071|Q8TC71-2|SPATA18	MULTI-SECPEP	A375_MHC_IP_R2	2	402.9206848144531	3	403.515877	1207.5258	-0.53995	-0.00021788	0.73852	0.000298	0.19857	8.0127E-05	403.5159222177115	37.206	0.50716	37.977	37.716	38.223	0.7709					18	9	3	0	0	0	0.80713	1	13642	13642		4.1895	3.6263	1	2723700	+		14069	20334	10238	10315	13692	13692					-0.06966124918471905
FDSLEAIADVC	11	Unmodified	_FDSLEAIADVC_					0	0	0		CSAD|p.P255S|1|0.3|ENSG00000139631|chr12:53161329-53161329|G/A|missense_variant	CSAD|p.P255S|1|0.3|ENSG00000139631|chr12:53161329-53161329|G/A|missense_variant	CSAD|p.P255S|1|0.3|ENSG00000139631|chr12:53161329-53161329|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	591.6823120117188	2	591.770997	1181.52744	-0.71931	-0.00042567	0.75404	0.00044622	0.03473	2.0552E-05	591.771389396101	48.996	0.76211	49.754	49.434	50.196	0.75737					18	14	2	0	0	0	0.60747	1	18318	18318		22.736	2.2827	1	2871200			14070	668	10239	10316	13693	13693					-0.056062519447550585
FDSWRRLGQWI	11	Unmodified	_FDSWRRLGQWI_					0	0	0			REV__ENST00000409642.7_2_2:150071313-150071505:+|nuORF	REV__ENST00000409642.7_2_2:150071313-150071505:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	489.01031494140625	3	488.589599	1462.74697	-0.52935	-0.00025863	1.0665	0.00052108	0.53716	0.00026245	488.9244950224091	132.92	0.51059	132.92	132.64	133.15	0					13	9	2	0	0	0	1.0005	1	51240	51240		1.1098	0	1	1622500	+		14071	24471	10240	10317	13694	13694					0.03410359848658118
FDTLLLVGV	9	Unmodified	_FDTLLLVGV_					0	0	0		ENST00000478442.5_1_1:174843608-174846559:+|nuORF	ENST00000478442.5_1_1:174843608-174846559:+|nuORF	ENST00000478442.5_1_1:174843608-174846559:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	488.4693908691406	2	488.789318	975.564084	-0.34878	-0.00017048	0.77705	0.00037982	0.42828	0.00020934	488.79002956379895	58.579	0.50782	58.579	58.177	58.685	0					13	9	2	0	0	0	0.71541	1	20980	20980		16.942	9.6531	1	1747700			14072	12463	10241	10318	13695	13695					0.07532412734155969
FDTNSSALTHS	11	Unmodified	_FDTNSSALTHS_					0	0	0			REV__CON__A2I7N1	REV__CON__A2I7N1	MULTI-MSMS	A375_MHC_IP_R1	1	590.6671142578125	2	590.267467	1178.52038	-0.49396	-0.00029157	-0.022133	-1.3064E-05	-0.51609	-0.00030463	590.2672528989833	25.746	0.40472	25.746	25.562	25.966	0					15	7	3	0	0	0	0.69231	1	7585	7585		16.149	5.3496	1	3745300	+	+	14073	15837	10242	10319	13696	13696					-0.06173848500952772
FDVAPSYNE	9	Unmodified	_FDVAPSYNE_					0	0	0			REV__ENSG00000138641|ENST00000402738|HERC3	REV__ENSG00000138641|ENST00000402738|HERC3	MULTI-SECPEP	A375_MHC_IP_R1	1	520.65771484375	2	521.229822	1040.44509	-0.43063	-0.00022446	-0.0085834	-4.4739E-06	-0.43922	-0.00022893	521.2297460390901	72.855	0.25253	72.855	72.728	72.98	0					8	4	2	0	0	0	0.78798	1	26474	26474		3.9444	3.9444	1	1385000	+		14074	19107	10243	10320	13697	13697					-0.07351405961389901
FDVFRDPFF	9	Unmodified	_FDVFRDPFF_					0	0	0			REV__tr|U7T2F3|U7T2F3_FUSNUNADP-dependentoxidoreductasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00546PE=4SV=1	REV__tr|U7T2F3|U7T2F3_FUSNUNADP-dependentoxidoreductasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00546PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	397.5877380371094	3	397.194075	1188.5604	0.0013906	5.5232E-07	-2.6838	-0.001066	-2.6824	-0.0010654	397.1930223347501	28.601	0.30454	28.601	28.44	28.745	0					7	5	2	0	0	0	0.72623	1	8804	8804		18.373	7.5736	1	1405600	+		14075	28738	10244	10321	13698	13698					-0.02634257039721888
FDVHEFDQY	9	Unmodified	_FDVHEFDQY_					0	0	0		ENSG00000005513|ENST00000293894|SOX8;ENST00000566034.1_1_16:1033566-1035383:+|nuORF	ENSG00000005513|ENST00000293894|SOX8	ENSG00000005513|ENST00000293894|SOX8	MULTI-SECPEP	A375_MHC_IP_R2	2	599.6741333007812	2	600.253828	1198.4931	-0.47246	-0.00028359	0.52	0.00031213	0.047545	2.8539E-05	600.2537459145673	62.917	0.15216	63.659	63.584	63.736	0.74263					4	2	2	0	0	0	0.65246	1	23829	23829		21.747	10.252	1	730840			14076	897	10245	10322	13699	13699					-0.09820332041340407
FDYDPRAD	8	Unmodified	_FDYDPRAD_					0	0	0		ENSG00000129159|ENST00000265969|KCNC1;nc|ENSG00000129159|P48547|KCNC1;KCNC1|p.S44N|1|0.16|ENSG00000129159|chr11:17736133-17736133|G/A|missense_variant	ENSG00000129159|ENST00000265969|KCNC1	ENSG00000129159|ENST00000265969|KCNC1	MULTI-SECPEP	A375_MHC_IP_R1	1	499.4451904296875	2	499.714339	997.414125	-0.39566	-0.00019771	-0.15933	-7.9621E-05	-0.55499	-0.00027734	499.7140085910027	28.783	0.20197	28.783	28.643	28.845	0					6	3	2	0	0	0	0.972	1	8929	8929		0.52476	0	1	704210			14077	4178	10246	10323	13700	13700					-0.08468559275627285
FDYELLNQ	8	Unmodified	_FDYELLNQ_					0	0	0		DOCK2|p.S1319N|1|0.7|ENSG00000134516|chr5:170045895-170045895|G/A|missense_variant	DOCK2|p.S1319N|1|0.7|ENSG00000134516|chr5:170045895-170045895|G/A|missense_variant	DOCK2|p.S1319N|1|0.7|ENSG00000134516|chr5:170045895-170045895|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	1041.404541015625	1	1041.48875	1040.48148	0.14463	0.00015063	2.2677	0.0023618	2.4123	0.0025124	1041.4923883691872	95.943	1.0155	95.943	95.614	96.63	0					39	19	3	0	0	0	0.77643	1	35150	35150		7.9102	3.1541	1	9480900			14078	782	10247	10324	13701	13701					-0.03714529064677663
FDYELLNQ	8	Unmodified	_FDYELLNQ_					0	0	0		DOCK2|p.S1319N|1|0.7|ENSG00000134516|chr5:170045895-170045895|G/A|missense_variant	DOCK2|p.S1319N|1|0.7|ENSG00000134516|chr5:170045895-170045895|G/A|missense_variant	DOCK2|p.S1319N|1|0.7|ENSG00000134516|chr5:170045895-170045895|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		1	1041.48875	1040.48148	0.28393	0.00029571	3.1073	0.0032362	3.3912	0.0035319	1041.4921352442614	95.209	0.76466	95.96	95.633	96.398	0.75045	0.0085286	7.6365E-05	NaN	7.9102	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9256800			14079	782	10247	10324							-0.03714529064677663
FDYFLWYKKY	10	Unmodified	_FDYFLWYKKY_					0	0	0		nc|ENSG00000211810|P04437|TRAV29DV5	nc|ENSG00000211810|P04437|TRAV29DV5	nc|ENSG00000211810|P04437|TRAV29DV5	MSMS	A375_MHC_IP_R1	1	491.653564453125	3	491.579818	1471.71762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37	1	37	36.5	37.5	0								0	0	0	0.15539	1	12439	12439		3.3196	0.47636	1				14080	14884	10248	10325	13702	13702					0.0006340277980143583
FDYGEFVNL	9	Unmodified	_FDYGEFVNL_					0	0	0		ENSG00000134758|ENST00000261593|RNF138;nc|ENSG00000134758|Q8WVD3-2|RNF138;ENST00000502765.1_1_5:54825986-54826487:-|nuORF	ENSG00000134758|ENST00000261593|RNF138	ENSG00000134758|ENST00000261593|RNF138	MSMS	A375_MHC_IP_R2	2	552.1110229492188	2	552.25584	1102.49713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.24	1	109.99	109.49	110.49	0.74684								0	0	0	0.1499	1	41231	41231		21.747	5.8995	1				14081	4604	10249	10326	13703	13703					-0.05002242547629976
FEAAYKTDY	9	Unmodified	_FEAAYKTDY_					0	0	0			REV__ENST00000471337.5_1_1:45805924-45808422:+|nuORF	REV__ENST00000471337.5_1_1:45805924-45808422:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	554.153076171875	2	554.253297	1106.49204	-0.79267	-0.00043934	3.2953	0.0018264	2.5026	0.0013871	554.2555195013506	31.758	0.3539	32.495	32.35	32.704	0.73691					8	6	2	0	0	0	0.46465	1	11257	11257		21.537	1.0834	1	1568700	+		14082	18678	10250	10327	13704	13704					-0.05694546410222756
FEALQKRKR	9	Unmodified	_FEALQKRKR_					0	0	0		SOS2|p.E893K|1|0.09|ENSG00000100485|chr14:50140050-50140050|C/T|missense_variant	SOS2|p.E893K|1|0.09|ENSG00000100485|chr14:50140050-50140050|C/T|missense_variant	SOS2|p.E893K|1|0.09|ENSG00000100485|chr14:50140050-50140050|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	393.2595520019531	3	392.571768	1174.69348	0.11889	4.6674E-05	-0.11909	-4.6751E-05	-0.00019586	-7.689E-08	392.571709122046	25.234	0.91349	25.234	25.053	25.966	0					47	17	4	0	0	0	0.65748	1	7471	7471		10.8	0	1	117670000			14083	29221	10251	10328	13705	13705					0.11311607136781276
FEAPNFFQKY	10	Unmodified	_FEAPNFFQKY_					0	0	0		ENSG00000090060|ENST00000216277|PAPOLA	ENSG00000090060|ENST00000216277|PAPOLA	ENSG00000090060|ENST00000216277|PAPOLA	MULTI-SECPEP	A375_MHC_IP_R1	1	646.2110595703125	2	645.811313	1289.60807	-0.56649	-0.00036585	0.12245	7.9078E-05	-0.44404	-0.00028677	645.8113648071864	94.713	0.81634	94.713	94.394	95.211	0					34	15	4	0	0	0	0.015081	1	34784	34784		143.91	108.98	1	7671200			14084	1943	10252	10329	13706	13706					-0.025146028395283793
FEAPNFFQKY	10	Unmodified	_FEAPNFFQKY_					0	0	0		ENSG00000090060|ENST00000216277|PAPOLA	ENSG00000090060|ENST00000216277|PAPOLA	ENSG00000090060|ENST00000216277|PAPOLA	MULTI-MSMS	A375_MHC_IP_R2	2	646.2106323242188	2	645.811313	1289.60807	-0.50238	-0.00032444	-0.21062	-0.00013602	-0.713	-0.00046047	645.8110671155574	93.998	0.55696	94.742	94.463	95.02	0.74474					25	10	3	0	0	0	0.0018419	1	35714	35714		140.63	107.19	1	7240800			14085	1943	10252	10329	13707	13707					-0.025146028395283793
FEAVAFQLL	9	Unmodified	_FEAVAFQLL_					0	0	0			REV__ENSG00000144468|ENST00000392062|RHBDD1	REV__ENSG00000144468|ENST00000392062|RHBDD1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.6860961914062	2	519.286943	1036.55933	-0.66812	-0.00034695	0.68386	0.00035512	0.015742	8.1749E-06	519.286780171409	75.811	0.45912	76.552	76.282	76.742	0.74052					19	8	3	0	0	0	0.46045	1	28799	28799		29.082	6.4235	1	2611000	+		14086	19425	10253	10330	13708	13708					0.042515285913850676
FEAVPTKVF	9	Unmodified	_FEAVPTKVF_					0	0	0		ENSG00000121690|ENST00000241051|DEPDC7;nc|ENSG00000121690|Q96QD5-2|DEPDC7;ENST00000532078.1_1_11:33037501-33049388:+|nuORF;ENST00000427755.2_1_11:33037501-33047701:+|nuORF	ENSG00000121690|ENST00000241051|DEPDC7;ENST00000427755.2_1_11:33037501-33047701:+|nuORF	ENSG00000121690|ENST00000241051|DEPDC7	MULTI-SECPEP	A375_MHC_IP_R1	1	519.6868896484375	2	519.286943	1036.55933	-0.59765	-0.00031035	-0.80481	-0.00041793	-1.4025	-0.00072828	519.2867493191332	76.614	0.4059	76.614	76.37	76.776	0					26	7	5	0	0	0	0.71341	1	27978	27978		8.7454	0	1	1481300			14087	3730;11827	10254	10331	13709	13709					0.042515285913850676
FEDCSLCPSVP	11	Unmodified	_FEDCSLCPSVP_					0	0	0		nc|ENSG00000163946|Q9UK61-2|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-2|TASOR	nc|ENSG00000163946|Q9UK61-2|TASOR	MULTI-MSMS	A375_MHC_IP_R1	1	599.1519165039062	2	598.75175	1195.48895	-0.59257	-0.0003548	0.78476	0.00046987	0.19218	0.00011507	598.7519760265394	29.012	1.519	29.012	28.088	29.607	0					68	29	3	0	0	0	0.62292	2	8783	8783;9096		21.537	21.537	1	4736000			14088	6751	10255	10332	13710;13711	13710					-0.10097880850912588
FEDDNEDEYAP	11	Unmodified	_FEDDNEDEYAP_					0	0	0		ENST00000553115.1_1_12:55516583-55517273:-|nuORF	ENST00000553115.1_1_12:55516583-55517273:-|nuORF	ENST00000553115.1_1_12:55516583-55517273:-|nuORF	MSMS	A375_MHC_IP_R1	1	672.3612670898438	2	672.249137	1342.48372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.864	1	46.864	46.364	47.364	0								0	0	0	0.16249	1	16463	16463		5.7319	4.0792	1				14089	13397	10256	10333	13712	13712					-0.1738218990817586
FEDEIKKRF	9	Unmodified	_FEDEIKKRF_					0	0	0		ENSG00000114742|ENST00000302313|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;nc|ENSG00000114742|Q8TAF3-5|WDR48;WDR48|p.M413V|1|0.45|ENSG00000114742|chr3:39084218-39084218|A/G|missense_variant	ENSG00000114742|ENST00000302313|WDR48	ENSG00000114742|ENST00000302313|WDR48	MULTI-MSMS	A375_MHC_IP_R2	2	404.9517517089844	3	404.552151	1210.63462	-0.24795	-0.00010031	-0.44169	-0.00017869	-0.68964	-0.000279	404.5520304985764	30.046	0.3037	30.757	30.549	30.853	0.71093					9	5	2	0	0	0	0.26911	1	10543	10543		32.898	19.283	1	2229100			14090	3241	10257	10334	13713	13713					0.03773086051796781
FEDEITALQPE	11	Unmodified	_FEDEITALQPE_					0	0	0		nc|ENSG00000135318|P21589-2|NT5E;ENSG00000135318|ENST00000257770|NT5E	nc|ENSG00000135318|P21589-2|NT5E	nc|ENSG00000135318|P21589-2|NT5E	MULTI-MSMS	A375_MHC_IP_R1	1	431.606689453125	3	431.206597	1290.59796	-0.17389	-7.4983E-05	0.21857	9.4247E-05	0.044675	1.9264E-05	431.20665337533023	34.687	0.50691	34.687	34.405	34.912	0					19	9	3	0	0	0	0.69231	1	11442	11442		9.2438	0	1	5865700			14091	4668	10258	10335	13714	13714					-0.03571255355427638
FEDEMVQEAM	10	Unmodified	_FEDEMVQEAM_					0	0	0			REV__nc|ENSG00000172943|Q9UPP1-5|PHF8	REV__nc|ENSG00000172943|Q9UPP1-5|PHF8	MULTI-MSMS	A375_MHC_IP_R2	2	615.1458129882812	2	614.746664	1227.47878	-0.77448	-0.00047611	0.21652	0.00013311	-0.55795	-0.000343	614.7466062905565	36.301	0.50938	37.072	36.85	37.359	0.7709					19	9	3	0	0	0	0.1276	2	13258	13258;13268		57.722	11.701	1	5618400	+		14092	21183	10259	10336	13715;13716	13715					-0.1258648857613025
FEDEMVQEAM	10	Unmodified	_FEDEMVQEAM_					0	0	0			REV__nc|ENSG00000172943|Q9UPP1-5|PHF8	REV__nc|ENSG00000172943|Q9UPP1-5|PHF8	MULTI-SECPEP	A375_MHC_IP_R2	2	615.1458129882812	2	614.746664	1227.47878	-0.77448	-0.00047611	0.21652	0.00013311	-0.55795	-0.000343	614.7466062905565	36.301	0.50938	37.072	36.85	37.359	0.7709					19	9	3	0	0	0	0.22459	1	13258	13258		57.722	11.701	1	5618400	+		14093	21183	10259	10336	13717	13717					-0.1258648857613025
FEDENGQRW	9	Unmodified	_FEDENGQRW_					0	0	0		ENSG00000123983|ENST00000357430|ACSL3;ENST00000474422.1_1_2:223795406-223797999:+|nuORF	ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	MULTI-SECPEP	A375_MHC_IP_R1	1	591.1546020507812	2	590.754527	1179.4945	-0.37036	-0.00021879	0.36977	0.00021844	-0.0005882	-3.4748E-07	590.7547398440258	37.02	1.2188	37.02	36.745	37.964	0					64	23	4	0	0	0	4.1611E-09	1	12409	12409		223.81	223.81	1	108990000			14094	3865	10260	10337	13718	13718					-0.08806697952581999
FEDENGQRW	9	Unmodified	_FEDENGQRW_					0	0	0		ENSG00000123983|ENST00000357430|ACSL3;ENST00000474422.1_1_2:223795406-223797999:+|nuORF	ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	MSMS	A375_MHC_IP_R2	2	590.7048950195312	2	590.754527	1179.4945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.883	1	38.658	38.158	39.158	0.77451								0	0	0	0.13927	1	13899	13899		29.841	11.694	1				14095	3865	10260	10337	13719	13719					-0.08806697952581999
FEDENGQRW	9	Unmodified	_FEDENGQRW_					0	0	0		ENSG00000123983|ENST00000357430|ACSL3;ENST00000474422.1_1_2:223795406-223797999:+|nuORF	ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	MULTI-SECPEP	A375_MHC_IP_R2	2	591.1541137695312	2	590.754527	1179.4945	-0.7644	-0.00045157	0.31606	0.00018671	-0.44834	-0.00026486	590.7546995752634	36.308	1.4745	37.079	36.749	38.223	0.7709					68	28	4	0	0	0	4.2103999999999994E-21	1	13161	13161		257.82	257.82	1	110530000			14096	3865	10260	10337	13720	13720					-0.08806697952581999
FEDETVRKF	9	Unmodified	_FEDETVRKF_					0	0	0		ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728|OAS2	ENSG00000111335|ENST00000392583|OAS2	ENSG00000111335|ENST00000392583|OAS2	MULTI-MSMS	A375_MHC_IP_R1	1	586.1929931640625	2	585.793121	1169.57169	-0.33854	-0.00019832	-0.54841	-0.00032125	-0.88695	-0.00051957	585.7926689214146	33.191	0.35305	33.191	32.989	33.342	0					10	6	2	0	0	0	0.095851	1	10829	10829		51.415	19.11	1	2554300			14097	2986	10261	10338	13721	13721					-0.00631479736239271
FEDETVRKF	9	Unmodified	_FEDETVRKF_					0	0	0		ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728|OAS2	ENSG00000111335|ENST00000392583|OAS2	ENSG00000111335|ENST00000392583|OAS2	MULTI-SECPEP	A375_MHC_IP_R2	2	390.9464111328125	3	390.864506	1169.57169	-0.20751	-8.1107E-05	-1.9509	-0.00076254	-2.1584	-0.00084364	390.8637936176728	32.502	1.2186	33.239	32.453	33.671	0.73692					40	23	2	0	0	0	0.10535	1	11593	11593		75.571	47.942	1	15442000			14098	2986	10261	10338	13722	13722					-0.00631479736239271
FEDETVRKF	9	Unmodified	_FEDETVRKF_					0	0	0		ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728|OAS2	ENSG00000111335|ENST00000392583|OAS2	ENSG00000111335|ENST00000392583|OAS2	MULTI-MATCH	A375_MHC_IP_R2	2		2	585.793121	1169.57169	-0.55971	-0.00032787	-1.0077	-0.00059031	-1.5674	-0.00091818	586.2942739558489	32.502	0.40681	33.239	32.96	33.367	0.73692	0.024027	-0.00038215	NaN	51.415	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3683900			14099	2986	10261	10338							-0.00631479736239271
FEDGLPSNGPS	11	Unmodified	_FEDGLPSNGPS_					0	0	0			REV__ENSG00000188993|ENST00000682860|LRRC66	REV__ENSG00000188993|ENST00000682860|LRRC66	MULTI-SECPEP	A375_MHC_IP_R2	2	559.7086791992188	2	560.251286	1118.48802	-0.99922	-0.00055981	-0.14037	-7.8642E-05	-1.1396	-0.00063845	560.2511247682738	24.504	0.45535	25.148	25.009	25.465	0.64368					16	8	2	0	0	0	0.92392	1	8136	8136		22.658	9.1502	1	5775500	+		14100	22130	10262	10339	13723	13723					-0.06648635903957256
FEDIGWDNW	9	Unmodified	_FEDIGWDNW_					0	0	0		GDF2|p.S343N|1|0.27|ENSG00000263761|chr10:47325522-47325522|G/A|missense_variant	GDF2|p.S343N|1|0.27|ENSG00000263761|chr10:47325522-47325522|G/A|missense_variant	GDF2|p.S343N|1|0.27|ENSG00000263761|chr10:47325522-47325522|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	591.578369140625	2	591.248546	1180.48254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.116	1	40.116	39.616	40.616	0								0	0	0	0.12988	1	13764	13764		32.786	12.371	1				14101	14042	10263	10340	13724	13724					-0.10048314695768568
FEDINEENKV	10	Unmodified	_FEDINEENKV_					0	0	0		tr|U7SSR9|U7SSR9_FUSNUMPNdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01550PE=4SV=1	tr|U7SSR9|U7SSR9_FUSNUMPNdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01550PE=4SV=1	tr|U7SSR9|U7SSR9_FUSNUMPNdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01550PE=4SV=1	MSMS	A375_MHC_IP_R2	2	618.7571411132812	2	618.790775	1235.567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.877	1	94.622	94.122	95.122	0.74474								0	0	0	0.15332	1	35682	35682		10.074	2.9722	1				14102	29648	10264	10341	13725	13725					-0.04136408669683078
FEDPSDRFY	9	Unmodified	_FEDPSDRFY_					0	0	0			REV__ENSG00000056050|ENST00000393381|HPF1	REV__ENSG00000056050|ENST00000393381|HPF1	MULTI-MSMS	A375_MHC_IP_R2	2	588.6551513671875	2	588.253828	1174.4931	-0.52594	-0.00030938	0.77117	0.00045364	0.24523	0.00014426	588.2542454367868	46.013	1.3659	46.779	45.947	47.313	0.76518					80	26	4	0	0	0	0.2002	1	16997	16997		37.974	13.3	1	78376000	+		14103	16419	10265	10342	13726	13726					-0.08716332041331043
FEDTDNSYWEE	11	Unmodified	_FEDTDNSYWEE_					0	0	0		tr|U7T5C1|U7T5C1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00011PE=4SV=1;tr|U7SSQ0|U7SSQ0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01530PE=4SV=1	tr|U7T5C1|U7T5C1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00011PE=4SV=1	tr|U7T5C1|U7T5C1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00011PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	718.47509765625	2	717.770236	1433.52592	-0.58679	-0.00042118	-1.5389	-0.0011046	-2.1257	-0.0015258	717.769196069493	81.426	0.55712	81.426	81.1	81.657	0					14	10	2	0	0	0	0.99227	1	29710	29710		5.7319	3.4491	1	2321700			14104	30018	10266	10343	13727	13727					-0.1735021449976557
FEDTLNLPKL	10	Unmodified	_FEDTLNLPKL_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-MSMS	A375_MHC_IP_R1	1	595.7272338867188	2	595.326796	1188.63904	-0.4601	-0.00027391	-0.14876	-8.856E-05	-0.60885	-0.00036247	595.3267414583679	58.452	0.45837	58.452	58.278	58.736	0					22	8	4	0	0	0	0.70565	1	21004	21004		15.248	15.248	1	4365100	+		14105	21862	10267	10344	13728	13728					0.05226550474708347
FEDTLNLPKL	10	Unmodified	_FEDTLNLPKL_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	595.326796	1188.63904	-0.4601	-0.00027391	-0.14876	-8.856E-05	-0.60885	-0.00036247	595.3267414583679	58.452	0.45837	58.452	58.278	58.736	0	0.077216	-0.00022714	NaN	15.248	22	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4365100	+		14106	21862	10267	10344							0.05226550474708347
FEDVPNKSW	9	Unmodified	_FEDVPNKSW_					0	0	0		ENSG00000181555|ENST00000409792|SETD2;nc|ENSG00000181555|Q9BYW2-2|SETD2;nc|ENSG00000181555|Q9BYW2-3|SETD2	ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	MULTI-SECPEP	A375_MHC_IP_R1	1	561.66650390625	2	561.266739	1120.51892	-0.31505	-0.00017683	-0.17263	-9.6893E-05	-0.48769	-0.00027372	561.2666024474069	51.536	0.61001	51.536	51.219	51.829	0					19	11	2	0	0	0	0.16237	1	18330	18330		63.227	33.387	1	2759000			14107	8351	10268	10345	13729	13729					-0.03651437799044288
FEDVPNKSW	9	Unmodified	_FEDVPNKSW_					0	0	0		ENSG00000181555|ENST00000409792|SETD2;nc|ENSG00000181555|Q9BYW2-2|SETD2;nc|ENSG00000181555|Q9BYW2-3|SETD2	ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	MULTI-SECPEP	A375_MHC_IP_R2	2	561.6822509765625	2	561.266739	1120.51892	-0.70943	-0.00039818	-0.012507	-7.0196E-06	-0.72194	-0.0004052	561.2665303015352	50.956	0.70747	51.71	51.26	51.968	0.75406					22	13	2	0	0	0	0.076731	1	19204	19204		63.227	34.146	1	2551500			14108	8351	10268	10345	13730	13730					-0.03651437799044288
FEDYGEGSEA	10	Unmodified	_FEDYGEGSEA_					0	0	0		ENST00000483002.1_1_16:524982-539001:+|nuORF;nc|ENSG00000090565|O75154-2|RAB11FIP3;ENSG00000090565|ENST00000262305|RAB11FIP3;nc|ENSG00000090565|O75154-3|RAB11FIP3	ENST00000483002.1_1_16:524982-539001:+|nuORF	ENST00000483002.1_1_16:524982-539001:+|nuORF	MSMS	A375_MHC_IP_R2	2	552.1506958007812	2	552.211826	1102.4091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.983	1	42.758	42.258	43.258	0.77451								0	0	0	0.15435	1	15604	15604		6.7232	1.9672	1				14109	1956	10269	10346	13731	13731					-0.13800907928884953
FEDYQRRF	8	Unmodified	_FEDYQRRF_					0	0	0			REV__nc|ENSG00000102452|Q8IZF0-2|NALCN	REV__nc|ENSG00000102452|Q8IZF0-2|NALCN	MSMS	A375_MHC_IP_R1	1	387.4455261230469	3	387.520962	1159.54106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.845	1	37.845	37.345	38.345	0								0	0	0	0.16876	1	12786	12786		3.9444	2.038	1		+		14110	25103	10270	10347	13732	13732					-0.03233213330622675
FEDYQRRF	8	Unmodified	_FEDYQRRF_					0	0	0			REV__nc|ENSG00000102452|Q8IZF0-2|NALCN	REV__nc|ENSG00000102452|Q8IZF0-2|NALCN	MSMS	A375_MHC_IP_R1	1	387.4454040527344	3	387.520962	1159.54106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.951	1	37.951	37.451	38.451	0								0	0	0	0.16876	1	12830	12830		3.9444	0	1		+		14111	25103	10270	10347	13733	13733					-0.03233213330622675
FEEAANFLLRH	11	Unmodified	_FEEAANFLLRH_					0	0	0		ENSG00000136881|ENST00000259407|BAAT	ENSG00000136881|ENST00000259407|BAAT	ENSG00000136881|ENST00000259407|BAAT	MSMS	A375_MHC_IP_R1	1	449.6318664550781	3	449.566571	1345.67788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.398	1	19.398	18.898	19.898	0								0	0	0	0.16172	1	4789	4789		9.7643	3.5299	1				14112	4836	10271	10348	13734	13734					0.018872758290854108
FEEEKRIFA	9	Unmodified	_FEEEKRIFA_					0	0	0		ENST00000588797.5_1_19:44332091-44335502:+|nuORF;ENST00000588967.1_1_19:44332352-44339713:+|nuORF	ENST00000588797.5_1_19:44332091-44335502:+|nuORF	ENST00000588797.5_1_19:44332091-44335502:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	390.60498046875	3	390.204751	1167.59242	-0.56023	-0.0002186	0.63042	0.00024599	0.070191	2.7389E-05	390.20505022425385	59.471	0.50492	60.218	59.996	60.501	0.74714					18	9	3	0	0	0	0.6324	1	22540	22540		8.9762	0	1	1693600			14113	13769	10272	10349	13735	13735					0.01533110643413238
FEEERNEY	8	Unmodified	_FEEERNEY_					0	0	0			REV__nc|ENSG00000179873|P59045-3|NLRP11	REV__nc|ENSG00000179873|P59045-3|NLRP11	MULTI-SECPEP	A375_MHC_IP_R2	2	558.1043090820312	2	558.235635	1114.45672	-0.71767	-0.00040063	-0.53301	-0.00029754	-1.2507	-0.00069817	558.2354248461222	73.033	0.76363	73.769	73.48	74.243	0.73541					25	14	3	0	0	0	0.972	1	27657	27657		5.7604	0	1	3443600	+		14114	21584	10273	10350	13736	13736					-0.09593208938031239
FEEHTILTH	9	Unmodified	_FEEHTILTH_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16;nc|ENSG00000221843|Q68DN1|SPATA31H1	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	A375_MHC_IP_R2	2	563.6680297851562	2	563.780013	1125.54547	-0.60616	-0.00034174	-0.41937	-0.00023644	-1.0255	-0.00057818	563.7794451470918	81.344	0.50552	82.087	81.775	82.28	0.74355					14	9	2	0	0	0	0.28475	1	30919	30919		39.957	12.329	1	1136300			14115	9666	10274	10351	13737	13737					-0.012277489077177961
FEERLPVQDP	10	Unmodified	_FEERLPVQDP_					0	0	0			REV__ENSG00000141449|ENST00000424526|GREB1L	REV__ENSG00000141449|ENST00000424526|GREB1L	MULTI-SECPEP	A375_MHC_IP_R1	1	410.94317626953125	3	410.543544	1228.6088	-0.26136	-0.0001073	0.72647	0.00029825	0.46511	0.00019095	410.5436149256896	23.661	0.35596	23.661	23.432	23.787	0					16	6	3	0	0	0	0.79895	1	6556	6556		28.234	1.1452	1	13770000	+		14116	19268	10275	10352	13738	13738					0.003641918095354413
FEESLRNKEP	10	Unmodified	_FEESLRNKEP_					0	0	0			REV__nc|ENSG00000285053|Q15813-2|TBCE	REV__nc|ENSG00000285053|Q15813-2|TBCE	MULTI-MSMS	A375_MHC_IP_R2	2	624.7581787109375	2	624.814584	1247.61462	-0.72254	-0.00045145	3.1007	0.0019374	2.3782	0.0014859	624.8167435432387	79.888	0.76274	80.632	79.997	80.759	0.74474					19	14	2	0	0	0	0.71361	1	30110	30110		6.2058	0.47393	1	2606500	+		14117	27553	10276	10353	13739	13739					0.0007129032119337353
FEFRPDGKLRY	11	Unmodified	_FEFRPDGKLRY_					0	0	0		ENST00000537852.5_1_12:10762420-10766167:-|nuORF;ENST00000462941.1_1_1:53699171-53704129:-|nuORF;nc|ENSG00000162385|P61326-2|MAGOH;ENSG00000162385|ENST00000371470|MAGOH;ENSG00000111196|ENST00000320756|MAGOHB	ENST00000537852.5_1_12:10762420-10766167:-|nuORF	ENST00000537852.5_1_12:10762420-10766167:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	357.9310607910156	4	357.69121	1426.73573	-0.10666	-3.8151E-05	-0.17196	-6.151E-05	-0.27862	-9.9662E-05	357.9418527047383	53.098	0.65801	53.098	52.847	53.505	0					18	12	2	0	0	0	0.73439	1	18857	18857		4.7159	2.2811	1	5161900			14118	2969	10277	10354	13740	13740					0.03943537754503268
FEFRPDGKLRY	11	Unmodified	_FEFRPDGKLRY_					0	0	0		ENST00000537852.5_1_12:10762420-10766167:-|nuORF;ENST00000462941.1_1_1:53699171-53704129:-|nuORF;nc|ENSG00000162385|P61326-2|MAGOH;ENSG00000162385|ENST00000371470|MAGOH;ENSG00000111196|ENST00000320756|MAGOHB	ENST00000537852.5_1_12:10762420-10766167:-|nuORF	ENST00000537852.5_1_12:10762420-10766167:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	477.32037353515625	3	476.585854	1426.73573	-0.68118	-0.00032464	0.34734	0.00016554	-0.33384	-0.0001591	476.9205808831928	53.083	0.50502	53.083	52.847	53.352	0					26	9	4	0	0	0	0.77198	1	18910	18910		34.674	28.439	1	8453400			14119	2969	10277	10354	13741	13741					0.03943537754503268
FEFRPDGKLRY	11	Unmodified	_FEFRPDGKLRY_					0	0	0		ENST00000537852.5_1_12:10762420-10766167:-|nuORF;ENST00000462941.1_1_1:53699171-53704129:-|nuORF;nc|ENSG00000162385|P61326-2|MAGOH;ENSG00000162385|ENST00000371470|MAGOH;ENSG00000111196|ENST00000320756|MAGOHB	ENST00000537852.5_1_12:10762420-10766167:-|nuORF	ENST00000537852.5_1_12:10762420-10766167:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	357.9307861328125	4	357.69121	1426.73573	-0.61468	-0.00021987	-0.023258	-8.3191E-06	-0.63794	-0.00022819	357.69119965445617	52.35	0.60569	53.103	52.831	53.437	0.75225					30	11	4	0	0	0	0.67398	1	19697	19697		17.572	13.166	1	5822700			14120	2969	10277	10354	13742	13742					0.03943537754503268
FEFRPDGKLRY	11	Unmodified	_FEFRPDGKLRY_					0	0	0		ENST00000537852.5_1_12:10762420-10766167:-|nuORF;ENST00000462941.1_1_1:53699171-53704129:-|nuORF;nc|ENSG00000162385|P61326-2|MAGOH;ENSG00000162385|ENST00000371470|MAGOH;ENSG00000111196|ENST00000320756|MAGOHB	ENST00000537852.5_1_12:10762420-10766167:-|nuORF	ENST00000537852.5_1_12:10762420-10766167:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	476.9853210449219	3	476.585854	1426.73573	-0.93667	-0.0004464	0.25267	0.00012042	-0.68399	-0.00032598	476.58592122045536	52.314	0.50506	53.066	52.78	53.285	0.75225					23	9	3	0	0	0	0.56099	1	19710	19710		26.346	19.722	1	7906800			14121	2969	10277	10354	13743	13743					0.03943537754503268
FEFTPKPEY	9	Unmodified	_FEFTPKPEY_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-MSMS	A375_MHC_IP_R1	1	579.6790161132812	2	579.279315	1156.54408	-0.58779	-0.00034049	0.47867	0.00027728	-0.10912	-6.3211E-05	579.2791680554975	68.169	0.55934	68.169	67.904	68.463	0					18	9	3	0	0	0	0.027818	1	24739	24739		76.825	40.698	1	3421500			14122	8061	10278	10355	13744	13744					-0.027933829964695178
FEGEGQFE	8	Unmodified	_FEGEGQFE_					0	0	0		ENSG00000109685|ENST00000508803|NSD2;nc|ENSG00000109685|O96028-6|NSD2;ENST00000508355.5_1_4:1902372-1920392:+|nuORF;nc|ENSG00000109685|O96028-5|NSD2;nc|ENSG00000109685|O96028-3|NSD2	ENSG00000109685|ENST00000508803|NSD2	ENSG00000109685|ENST00000508803|NSD2	MULTI-MSMS	A375_MHC_IP_R2	2	942.3905029296875	1	942.383953	941.376677	-0.063045	-5.9412E-05	-0.047479	-4.4743E-05	-0.11052	-0.00010416	942.3838561842954	109.94	0.86846	110.68	110.28	111.15	0.74684					36	16	3	0	0	0	0.77374	1	41371	41371		13.906	3.7227	1	7634800			14123	2884	10279	10356	13745	13745					-0.0963565054122455
FEGEGQFE	8	Unmodified	_FEGEGQFE_					0	0	0		ENSG00000109685|ENST00000508803|NSD2;nc|ENSG00000109685|O96028-6|NSD2;ENST00000508355.5_1_4:1902372-1920392:+|nuORF;nc|ENSG00000109685|O96028-5|NSD2;nc|ENSG00000109685|O96028-3|NSD2	ENSG00000109685|ENST00000508803|NSD2	ENSG00000109685|ENST00000508803|NSD2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	942.383953	941.376677	0.15906	0.00014989	-0.061769	-5.821E-05	0.097286	9.1681E-05	942.3838730260397	110.41	0.91497	110.41	110.04	110.95	0	-0.13742	-5.4839E-06	NaN	13.906	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6926100			14124	2884	10279	10356							-0.0963565054122455
FEGGVTDLYY	10	Unmodified	_FEGGVTDLYY_					0	0	0		ENST00000508918.5_1_4:16504706-16675844:-|nuORF;nc|ENSG00000169744|O43679-2|LDB2;nc|ENSG00000169744|O43679-3|LDB2;ENSG00000169744|ENST00000304523|LDB2	ENST00000508918.5_1_4:16504706-16675844:-|nuORF	ENST00000508918.5_1_4:16504706-16675844:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	582.687255859375	2	582.266404	1162.51826	-0.61504	-0.00035812	0.97558	0.00056805	0.36054	0.00020993	582.2669870856029	67.964	1.014	67.964	67.449	68.463	0					23	19	2	0	0	0	0.51963	1	24671	24671		26.884	1.4843	1	1747600			14125	7434	10280	10357	13746	13746					-0.05650277238760282
FEGKETNYHS	10	Unmodified	_FEGKETNYHS_					0	0	0			REV__ENST00000398588.2_1_6:58446590-58447106:-|nuORF	REV__ENST00000398588.2_1_6:58446590-58447106:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	606.669921875	2	606.27001	1210.52547	-0.50529	-0.00030634	0.28017	0.00016986	-0.22513	-0.00013649	606.2700059903468	66.145	1.3741	66.145	65.717	67.091	0					57	26	4	0	0	0	0.57505	1	23884	23884		22.736	5.6234	1	17377000	+		14126	24376	10281	10358	13747	13747					-0.07137544638339932
FEGKETNYHS	10	Unmodified	_FEGKETNYHS_					0	0	0			REV__ENST00000398588.2_1_6:58446590-58447106:-|nuORF	REV__ENST00000398588.2_1_6:58446590-58447106:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	606.6687622070312	2	606.27001	1210.52547	-0.57174	-0.00034663	-0.059921	-3.6328E-05	-0.63166	-0.00038296	606.2697978251164	65.567	1.7313	66.305	65.715	67.446	0.73812					69	33	4	0	0	0	0.48529	1	24797	24797		29.082	9.7196	1	16293000	+		14127	24376	10281	10358	13748	13748					-0.07137544638339932
FEGKETNYHS	10	Unmodified	_FEGKETNYHS_					0	0	0			REV__ENST00000398588.2_1_6:58446590-58447106:-|nuORF	REV__ENST00000398588.2_1_6:58446590-58447106:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	606.27001	1210.52547	-0.57174	-0.00034663	-0.059921	-3.6328E-05	-0.63166	-0.00038296	606.2697978251164	65.567	1.7313	66.305	65.715	67.446	0.73812	0.079955	-0.00019507	NaN	29.082	69	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16293000	+		14128	24376	10281	10358							-0.07137544638339932
FEHEQEDKKI	10	Unmodified	_FEHEQEDKKI_					0	0	0			REV__nc|ENSG00000013275|P43686-2|PSMC4	REV__nc|ENSG00000013275|P43686-2|PSMC4	MSMS	A375_MHC_IP_R2	2	434.93853759765625	3	434.882337	1301.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.986	1	36.749	36.249	37.249	0.76338								0	0	0	0.15365	1	13079	13079		8.9762	0	1		+		14129	16227	10282	10359	13749	13749					-0.013567270243811436
FEHSRYARQ	9	Unmodified	_FEHSRYARQ_					0	0	0			REV__nc|ENSG00000134900|P29144|TPP2	REV__nc|ENSG00000134900|P29144|TPP2	MULTI-SECPEP	A375_MHC_IP_R1	1	597.2089233398438	2	597.294153	1192.57375	-0.41153	-0.00024581	1.0909	0.0006516	0.67938	0.00040579	598.2968160994237	46.359	0.55294	46.359	46.043	46.596	0					26	10	4	0	0	0	0.76187	1	16150	16150		11.64	0	1	2455000	+		14130	18810	10283	10360	13750	13750					-0.014830062077862749
FEIETKQGTQY	11	Unmodified	_FEIETKQGTQY_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	A375_MHC_IP_R1	1	672.72705078125	2	672.327524	1342.6405	-0.57541	-0.00038687	-0.14982	-0.00010073	-0.72523	-0.00048759	672.3273022962398	46.145	0.65598	46.145	45.839	46.495	0					33	12	4	0	0	0	1.1345E-14	1	16148	16148		183.95	130.64	1	8096800			14131	5785	10284	10361	13751	13751					-0.017118602271693817
FEIETKQGTQY	11	Unmodified	_FEIETKQGTQY_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	A375_MHC_IP_R2	2	672.7266845703125	2	672.327524	1342.6405	-0.77513	-0.00052114	0.023628	1.5886E-05	-0.7515	-0.00050526	672.3274579407779	45.421	0.55524	46.186	45.947	46.503	0.76519					28	10	3	0	0	0	1.1345E-14	1	16951	16951		183.95	119.03	1	8509600			14132	5785	10284	10361	13752	13752					-0.017118602271693817
FEIFRRFYLA	10	Unmodified	_FEIFRRFYLA_					0	0	0		ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-2|CUL3;nc|ENSG00000036257|Q13618-3|CUL3	ENSG00000036257|ENST00000264414|CUL3	ENSG00000036257|ENST00000264414|CUL3	MSMS	A375_MHC_IP_R1	1	681.6273193359375	2	681.371872	1360.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.79	1	113.79	113.29	114.29	0								0	0	0	0.15479	1	41714	41714		5.2969	2.0156	1				14133	1136	10285	10362	13753	13753					0.06325644593812285
FEIPEKTRN	9	Unmodified	_FEIPEKTRN_					0	0	0			REV__ITGA8|p.G123R|1|0.23|ENSG00000077943|chr10:15688015-15688015|C/T|missense_variant	REV__ITGA8|p.G123R|1|0.23|ENSG00000077943|chr10:15688015-15688015|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	567.700927734375	2	567.301113	1132.58767	-0.26228	-0.00014879	-0.40116	-0.00022758	-0.66344	-0.00037637	567.3008047815973	71.063	0.4621	71.063	70.749	71.211	0					13	8	2	0	0	0	0.65527	1	25797	25797		17.113	5.6182	1	1624000	+		14134	26803	10286	10363	13754	13754					0.026682265006684247
FEIRQKNLS	9	Unmodified	_FEIRQKNLS_					0	0	0		CRNKL1|p.L672*|1|0.43|ENSG00000101343|chr20:20039622-20039622|A/-|frameshift_variant;ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	CRNKL1|p.L672*|1|0.43|ENSG00000101343|chr20:20039622-20039622|A/-|frameshift_variant	CRNKL1|p.L672*|1|0.43|ENSG00000101343|chr20:20039622-20039622|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	379.2807922363281	3	378.880379	1133.61931	0.31878	0.00012078	0.4269	0.00016175	0.74569	0.00028253	378.88051132121245	43.866	0.40631	43.866	43.603	44.01	0					10	7	2	0	0	0	0.72623	1	15301	15301		13.615	0	1	3147400			14135	663	10287	10364	13755	13755					0.05784219254610434
FEKERYREWER	11	Unmodified	_FEKERYREWER_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;RBBP6|p.E1056Nfs*55|1|0.28|ENSG00000122257|chr16:24569855-24569855|T/-|frameshift_variant	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MULTI-SECPEP	A375_MHC_IP_R1	1	543.6610717773438	3	543.270706	1626.79029	-0.50366	-0.00027362	2.6155	0.001421	2.1119	0.0011473	543.6058044998153	91.982	0.20398	91.982	91.906	92.11	0					5	3	2	0	0	0	1.0014	1	33784	33784		0.45452	0.046251	1	1434500			14136	3771	10288	10365	13756	13756					0.001965048352985832
FEKFVQAKGGI	11	Unmodified	_FEKFVQAKGGI_					0	0	0		ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	MSMS	A375_MHC_IP_R2	2	408.6120300292969	3	408.564279	1222.67101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.201	1	23.831	23.331	24.331	0.63014								0	0	0	0.16182	1	7426	7426		9.2438	0.26753	1				14137	5115	10289	10366	13757	13757					0.06857962948515706
FEKHLNREYKL	11	Unmodified	_FEKHLNREYKL_					0	0	0			REV__ENST00000332070.7_1_X:133527609-133547529:+|nuORF	REV__ENST00000332070.7_1_X:133527609-133547529:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	493.33685302734375	3	492.936776	1475.7885	-0.44751	-0.0002206	0.36264	0.00017876	-0.084876	-4.1839E-05	492.93683921650097	19.611	0.45765	19.611	19.42	19.877	0					17	8	3	0	0	0	0.7328	1	4944	4944		6.2344	3.3911	1	2376200	+		14138	23635	10290	10367	13758	13758					0.06963495817308285
FEKHLNREYKL	11	Unmodified	_FEKHLNREYKL_					0	0	0			REV__ENST00000332070.7_1_X:133527609-133547529:+|nuORF	REV__ENST00000332070.7_1_X:133527609-133547529:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	492.936776	1475.7885	-0.77402	-0.00038154	0.4778	0.00023552	-0.29622	-0.00014602	492.93703387291384	18.905	0.18035	19.508	19.452	19.633	0.60308	-0.051538	0.00014448	NaN	6.2344	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3720000	+		14139	23635	10290	10367							0.06963495817308285
FELFNRRDEL	10	Unmodified	_FELFNRRDEL_					0	0	0			REV__SPTBN5|p.Q2777Rfs*33|1|0.22|ENSG00000137877|chr15:41857606-41857609|CTGG/-|frameshift_variant	REV__SPTBN5|p.Q2777Rfs*33|1|0.22|ENSG00000137877|chr15:41857606-41857609|CTGG/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	669.7354125976562	2	669.843676	1337.6728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.184	1	67.184	66.684	67.684	0								0	0	0	0.15451	1	24343	24343		6.2058	1.3088	1		+		14140	19047	10291	10368	13759	13759					0.01746971966485944
FELFNSEN	8	Unmodified	_FELFNSEN_					0	0	0			REV__ENSG00000135749|ENST00000258229|PCNX2	REV__ENSG00000135749|ENST00000258229|PCNX2	MSMS	A375_MHC_IP_R1	1	500.1379699707031	2	500.224539	998.434526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.659	1	41.659	41.159	42.159	0								0	0	0	0.16876	1	14397	14397		18.135	1.1927	1		+		14141	18881	10292	10369	13760	13760					-0.06475388615808697
FELFYRSFQRQ	11	Unmodified	_FELFYRSFQRQ_					0	0	0			REV__EIF2AK4|p.I588L|1|0.49|ENSG00000128829|chr15:39973693-39973693|A/C|missense_variant	REV__EIF2AK4|p.I588L|1|0.49|ENSG00000128829|chr15:39973693-39973693|A/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	760.6493530273438	2	760.885875	1519.7572	-0.2154	-0.0001639	-3.3955	-0.0025836	-3.6109	-0.0027475	760.8830947447728	112.15	0.66206	112.15	111.77	112.43	0					17	12	2	0	0	0	0.99507	1	41017	41017		7.609	0	1	2959600	+		14142	16071	10293	10370	13761	13761					0.01810922783215574
FELFYRSFQRQ	11	Unmodified	_FELFYRSFQRQ_					0	0	0			REV__EIF2AK4|p.I588L|1|0.49|ENSG00000128829|chr15:39973693-39973693|A/C|missense_variant	REV__EIF2AK4|p.I588L|1|0.49|ENSG00000128829|chr15:39973693-39973693|A/C|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	760.885875	1519.7572	-0.7279	-0.00055385	-4.1314	-0.0031435	-4.8593	-0.0036974	761.3847025032627	111.02	0.25435	111.76	111.6	111.85	0.73692	-0.19845	-0.00071976	NaN	7.609	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3298200	+		14143	16071	10293	10370							0.01810922783215574
FELHDQGDY	9	Unmodified	_FELHDQGDY_					0	0	0			REV__ENST00000483782.1_1_6:26091468-26093193:+|nuORF	REV__ENST00000483782.1_1_6:26091468-26093193:+|nuORF	MSMS	A375_MHC_IP_R2	2	562.1585693359375	2	562.238178	1122.4618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.246	1	57.995	57.495	58.495	0.74894								0	0	0	0.1521	1	21645	21645		18.135	5.6034	1		+		14144	16198	10294	10371	13762	13762					-0.09452905075431772
FELKGHGSY	9	Unmodified	_FELKGHGSY_					0	0	0			REV__ENST00000497699.1_1_10:28970877-28971327:+|nuORF	REV__ENST00000497699.1_1_10:28970877-28971327:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	519.6860961914062	2	519.256174	1036.49779	-0.66968	-0.00034774	-2.9147	-0.0015135	-3.5844	-0.0018612	519.2547320259683	75.867	0.35567	76.608	76.436	76.792	0.74052					10	6	2	0	0	0	0.6898	1	28799	28799		7.9102	2.1497	1	761500	+		14145	16998	10295	10372	13763	13763					-0.01899403107904618
FELKRRFVV	9	Unmodified	_FELKRRFVV_					0	0	0			REV__ENST00000554523.5_1_14:68228796-68282710:-|nuORF	REV__ENST00000554523.5_1_14:68228796-68282710:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	398.9762268066406	3	398.576631	1192.70806	-0.091117	-3.6317E-05	-0.60785	-0.00024228	-0.69897	-0.00027859	398.57633606646976	56.703	0.6613	56.703	56.397	57.059	0					27	12	3	0	0	0	0.76827	1	20314	20314		7.1017	4.8189	1	4858700	+		14146	16597	10296	10373	13764	13764					0.11941679284927886
FELKRRFVV	9	Unmodified	_FELKRRFVV_					0	0	0			REV__ENST00000554523.5_1_14:68228796-68282710:-|nuORF	REV__ENST00000554523.5_1_14:68228796-68282710:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	398.576631	1192.70806	-0.15327	-6.109E-05	-1.1512	-0.00045884	-1.3045	-0.00051993	398.5760613101549	55.574	0.60978	56.325	56.084	56.694	0.75075	-0.18933	-0.00034034	NaN	7.1017	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7932300	+		14147	16597	10296	10373							0.11941679284927886
FELTFLYW	8	Unmodified	_FELTFLYW_					0	0	0		ENST00000299665.2_1_12:8666137-8666278:+|nuORF	ENST00000299665.2_1_12:8666137-8666278:+|nuORF	ENST00000299665.2_1_12:8666137-8666278:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	559.6471557617188	2	559.781493	1117.54843	-0.57552	-0.00032216	-1.6376	-0.0009167	-2.2131	-0.0012389	560.2817664919943	89.84	1.1657	90.572	89.685	90.851	0.7318					28	22	2	0	0	0	0.94479	1	34019	34019		8.5933	1.304	1	3018800			14148	10529	10297	10374	13765	13765					-0.005638737829258389
FEMLRCDKRLD	11	Unmodified	_FEMLRCDKRLD_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	A375_MHC_IP_R2	2	476.6949462890625	3	475.90409	1424.69044	-0.43222	-0.00020569	-2.2817	-0.0010859	-2.714	-0.0012916	476.2364985294638	84.42	0.30331	85.156	85.018	85.322	0.73602					8	5	2	0	0	0	0.99548	1	32069	32069		1.9275	0	1	754240	+		14149	21320	10298	10375	13766	13766					-0.004917720945513793
FEMSCWDMQ	9	Unmodified	_FEMSCWDMQ_					0	0	0		ENST00000265896.9_1_8:126034442-126034517:+|nuORF	ENST00000265896.9_1_8:126034442-126034517:+|nuORF	ENST00000265896.9_1_8:126034442-126034517:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	393.2103576660156	3	392.810139	1175.40859	0.18122	7.1186E-05	-0.023051	-9.0545E-06	0.15817	6.2131E-05	392.81010995116696	62.255	0.56265	62.255	61.994	62.557	0					24	10	3	0	0	0	0.73415	1	22519	22519		2.2828	0.69049	1	2441600			14150	10350	10299	10376	13767	13767					-0.17210065445601685
FEMSCWDMQ	9	Unmodified	_FEMSCWDMQ_					0	0	0		ENST00000265896.9_1_8:126034442-126034517:+|nuORF	ENST00000265896.9_1_8:126034442-126034517:+|nuORF	ENST00000265896.9_1_8:126034442-126034517:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	393.2101135253906	3	392.810139	1175.40859	-0.48694	-0.00019128	-0.043504	-1.7089E-05	-0.53044	-0.00020836	392.81004187333826	61.758	0.60434	62.501	62.27	62.874	0.74263					21	11	3	0	0	0	0.7911	1	23418	23418		4.5289	3.4574	1	2457900			14151	10350	10299	10376	13768	13768					-0.17210065445601685
FEMSCWDMQ	9	Unmodified	_FEMSCWDMQ_					0	0	0		ENST00000265896.9_1_8:126034442-126034517:+|nuORF	ENST00000265896.9_1_8:126034442-126034517:+|nuORF	ENST00000265896.9_1_8:126034442-126034517:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	392.810139	1175.40859	0.18122	7.1186E-05	-0.023051	-9.0545E-06	0.15817	6.2131E-05	392.81010995116696	62.255	0.56265	62.255	61.994	62.557	0	-0.1229	1.0691E-05	NaN	2.2828	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2441600			14152	10350	10299	10376							-0.17210065445601685
FEMWAPDFY	9	Unmodified	_FEMWAPDFY_					0	0	0		ENSG00000116254|ENST00000262450|CHD5	ENSG00000116254|ENST00000262450|CHD5	ENSG00000116254|ENST00000262450|CHD5	MSMS	A375_MHC_IP_R2	2	603.1849975585938	2	603.252243	1204.48993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.521	1	73.257	72.757	73.757	0.73541								0	0	0	0.15486	1	27522	27522		8.5933	0.98433	1				14153	3390	10300	10377	13769	13769					-0.10413298419689454
FENIECEWPV	10	Unmodified	_FENIECEWPV_					0	0	0		ENSG00000044446|ENST00000379942|PHKA2	ENSG00000044446|ENST00000379942|PHKA2	ENSG00000044446|ENST00000379942|PHKA2	MULTI-SECPEP	A375_MHC_IP_R2	2	632.7564086914062	2	633.278989	1264.54342	-0.61987	-0.00039255	-3.9399	-0.002495	-4.5598	-0.0028876	633.276078259088	111.17	0.15367	111.91	111.8	111.96	0.73692					4	2	2	0	0	0	0.93799	1	41927	41927		6.7232	5.3936	1	468380			14154	1185	10301	10378	13770	13770					-0.07826545707848709
FENLIFYAK	9	Unmodified	_FENLIFYAK_					0	0	0			REV__AP1S3|p.D115N|1|0.4|ENSG00000152056|chr2:223765299-223765299|C/T|missense_variant	REV__AP1S3|p.D115N|1|0.4|ENSG00000152056|chr2:223765299-223765299|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	381.595947265625	3	382.206092	1143.59645	0.098797	3.7761E-05	0.23824	9.1058E-05	0.33704	0.00012882	382.54018332656517	43.635	0.40293	44.404	44.228	44.631	0.7691					12	7	2	0	0	0	0.79429	1	16250	16250		7.1017	0	1	669100	+		14155	15418	10302	10379	13771	13771					0.030392001371410515
FENSQHLDY	9	Unmodified	_FENSQHLDY_					0	0	0		nc|ENSG00000196371|P22083-2|FUT4;ENSG00000196371|ENST00000358752|FUT4	nc|ENSG00000196371|P22083-2|FUT4	nc|ENSG00000196371|P22083-2|FUT4	MULTI-MSMS	A375_MHC_IP_R2	2	577.6851196289062	2	576.751453	1151.48835	-0.18523	-0.00010683	-1.0496	-0.00060534	-1.2348	-0.00071217	576.7510647994769	30.54	0.55443	31.258	30.962	31.517	0.71857					32	10	4	0	0	0	0.65721	1	10694	10694		10.824	1.4408	1	10344000			14156	9032	10303	10380	13772	13772					-0.0813321618406917
FEPFILPLT	9	Unmodified	_FEPFILPLT_					0	0	0		nc|ENSG00000170419|Q8TAG5-2|VSTM2A	nc|ENSG00000170419|Q8TAG5-2|VSTM2A	nc|ENSG00000170419|Q8TAG5-2|VSTM2A	MULTI-MSMS	A375_MHC_IP_R2	2	538.7052612304688	2	538.804968	1075.59538	-0.79711	-0.00042949	2.2334	0.0012033	1.4362	0.00077386	538.8071704967405	98.65	0.86395	99.41	98.844	99.708	0.75977					26	16	2	0	0	0	0.55818	1	37413	37413		16.942	0	1	2331700			14157	14764	10304	10381	13773	13773					0.060609857682493384
FEQFGRIYE	9	Unmodified	_FEQFGRIYE_					0	0	0		nc|ENSG00000161082|Q8N6W0-2|CELF5;ENSG00000161082|ENST00000292672|CELF5	nc|ENSG00000161082|Q8N6W0-2|CELF5	nc|ENSG00000161082|Q8N6W0-2|CELF5	MULTI-SECPEP	A375_MHC_IP_R2	2	594.1849365234375	2	594.787838	1187.56112	-0.61565	-0.00036618	-0.087466	-5.2024E-05	-0.70312	-0.00041821	594.7877893302104	67.028	0.8132	67.764	67.342	68.155	0.73631					36	15	4	0	0	0	0.56537	1	25539	25539		22.736	3.4793	1	9744900			14158	6464	10305	10382	13774	13774					-0.025154623906473716
FEQIRYKL	8	Unmodified	_FEQIRYKL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R1	1	366.60980224609375	3	366.209836	1095.60768	0.27487	0.00010066	0.011209	4.1047E-06	0.28608	0.00010477	366.2098468401575	47.442	0.50712	47.442	47.211	47.718	0					24	9	3	0	0	0	0.96184	1	16700	16700		13.042	3.6593	1	6292000	+		14159	19932	10306	10383	13775	13775					0.06370022231271832
FEQKTEQKW	9	Unmodified	_FEQKTEQKW_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	A375_MHC_IP_R1	1	408.9399108886719	3	408.540022	1222.59824	-0.4189	-0.00017114	0.5193	0.00021216	0.1004	4.1017E-05	408.5401399590605	23.661	0.35562	23.661	23.533	23.889	0					12	6	3	0	0	0	0.4465	1	6576	6576		35.612	25.085	1	6631700			14160	5295	10307	10384	13776	13776					-0.004157908449087699
FEQKTEQKW	9	Unmodified	_FEQKTEQKW_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	A375_MHC_IP_R2	2	408.9156799316406	3	408.540022	1222.59824	-0.33464	-0.00013671	-0.14417	-5.8898E-05	-0.47881	-0.00019561	408.5399440135809	22.891	0.56179	23.521	23.215	23.777	0.63014					18	10	3	0	0	0	0.70886	1	7244	7244		3.8763	1.033	1	2677600			14161	5295	10307	10384	13777	13777					-0.004157908449087699
FEQKTEQKW	9	Unmodified	_FEQKTEQKW_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	408.540022	1222.59824	-0.33464	-0.00013671	-0.14417	-5.8898E-05	-0.47881	-0.00019561	408.5399440135809	22.891	0.56179	23.521	23.215	23.777	0.63014	-0.069798	-0.00031345	NaN	35.612	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2677600			14162	5295	10307	10384							-0.004157908449087699
FEQLQTVIETD	11	Unmodified	_FEQLQTVIETD_					0	0	0			REV__ENSG00000086200|ENST00000325324|IPO11	REV__ENSG00000086200|ENST00000325324|IPO11	MULTI-MSMS	A375_MHC_IP_R1	1	662.2281494140625	2	661.827357	1321.64016	-0.43495	-0.00028786	0.87463	0.00057885	0.43967	0.00029099	661.8280133620368	55.988	0.76262	55.988	55.584	56.347	0					24	14	2	0	0	0	0.73502	1	20029	20029		2.4985	0	1	3175900	+		14163	16849	10308	10385	13778	13778					-0.007792799470507816
FEQSIKAY	8	Unmodified	_FEQSIKAY_					0	0	0		chr8:93795221-93795409|359|17.44|0.79|4.46|+|ENST00000519845|TMEM67,TMEM67;ENST00000474944.5_1_8:94767142-94822123:+|nuORF;ENSG00000164953|ENST00000453321|TMEM67	chr8:93795221-93795409|359|17.44|0.79|4.46|+|ENST00000519845|TMEM67,TMEM67	chr8:93795221-93795409|359|17.44|0.79|4.46|+|ENST00000519845|TMEM67,TMEM67	MULTI-MSMS	A375_MHC_IP_R2	2	493.6813659667969	2	493.2531	984.491647	-0.85285	-0.00042067	-0.3775	-0.0001862	-1.2303	-0.00060687	493.25358834516663	56.46	0.45949	57.21	56.948	57.408	0.75014					14	8	2	0	0	0	0.7011	1	21359	21359		34.402	0	1	1217800			14164	510	10309	10386	13779	13779					-0.001219213394392682
FERNFRHTFIL	11	Unmodified	_FERNFRHTFIL_					0	0	0		PKD1L1|p.S1844F|1|0.35|ENSG00000158683|chr7:47840482-47840482|G/A|missense_variant	PKD1L1|p.S1844F|1|0.35|ENSG00000158683|chr7:47840482-47840482|G/A|missense_variant	PKD1L1|p.S1844F|1|0.35|ENSG00000158683|chr7:47840482-47840482|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1995849609375	3	493.933366	1478.77827	-0.41576	-0.00020536	-0.99719	-0.00049255	-1.413	-0.0006979	493.9326477201046	133.41	1.0649	133.57	133.15	134.21	0.16487					55	20	4	0	0	0	0.99778	1	52386	52386		3.8459	0	1	7470100			14165	15185	10310	10387	13780	13780					0.058029328827615245
FERPSLFRI	9	Unmodified	_FERPSLFRI_					0	0	0		ZNF564|p.D263E|1|0.48|ENSG00000249709|chr19:12527319-12527319|G/C|missense_variant	ZNF564|p.D263E|1|0.48|ENSG00000249709|chr19:12527319-12527319|G/C|missense_variant	ZNF564|p.D263E|1|0.48|ENSG00000249709|chr19:12527319-12527319|G/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	389.2889709472656	3	388.888986	1163.64513	-0.0073139	-2.8443E-06	1.0699	0.00041609	1.0626	0.00041324	388.88947009646756	84.774	0.66373	84.774	84.292	84.955	0					19	12	2	0	0	0	0.77576	1	31095	31095		7.9454	4.0691	1	1397700			14166	30229	10311	10388	13781	13781					0.06985113496921258
FERPSLFRI	9	Unmodified	_FERPSLFRI_					0	0	0		ZNF564|p.D263E|1|0.48|ENSG00000249709|chr19:12527319-12527319|G/C|missense_variant	ZNF564|p.D263E|1|0.48|ENSG00000249709|chr19:12527319-12527319|G/C|missense_variant	ZNF564|p.D263E|1|0.48|ENSG00000249709|chr19:12527319-12527319|G/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	389.288818359375	3	388.888986	1163.64513	-0.10138	-3.9426E-05	0.26611	0.00010349	0.16473	6.4062E-05	389.22340276960625	83.722	0.61414	84.462	84.203	84.817	0.73962					16	11	3	0	0	0	0.14858	1	31849	31849		32.898	16.332	1	1690700			14167	30229	10311	10388	13782	13782					0.06985113496921258
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		ENSG00000122786|ENST00000361675|CALD1;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	ENSG00000122786|ENST00000361675|CALD1	ENSG00000122786|ENST00000361675|CALD1	MULTI-MSMS	A375_MHC_IP_R1	1	525.7093505859375	3	525.309718	1572.90732	-0.73122	-0.00038411	0.34828	0.00018295	-0.38294	-0.00020116	525.3095629753532	132.87	0.46002	132.87	132.69	133.15	0					24	8	4	0	0	0	0.73807	1	51260	51260		1.2148	1.1315	1	5339300			14168	3810	10312	10389	13783	13783					0.1437870756551547
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		ENSG00000122786|ENST00000361675|CALD1;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	ENSG00000122786|ENST00000361675|CALD1	ENSG00000122786|ENST00000361675|CALD1	MULTI-MSMS	A375_MHC_IP_R1	1	526.0228271484375	3	525.309718	1572.90732	-0.7478	-0.00039283	-0.05086	-2.6717E-05	-0.79866	-0.00041955	525.3095902274521	134.19	1.2184	134.19	133.3	134.52	0					116	23	6	0	0	0	0.73891	4	51606	51516;51606;51732;51856		0.40827	0.31342	1	156730000			14169	3810	10312	10389	13784;13785;13786;13787	13785					0.1437870756551547
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		ENSG00000122786|ENST00000361675|CALD1;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	ENSG00000122786|ENST00000361675|CALD1	ENSG00000122786|ENST00000361675|CALD1	MULTI-MSMS	A375_MHC_IP_R1	1	525.70947265625	3	525.309718	1572.90732	-0.76034	-0.00039941	0.10249	5.3838E-05	-0.65785	-0.00034557	525.3096823915353	134.9	3.5294	134.9	134.52	138.05	0					265	68	7	0	0	0	0.73924	2	52155	52155;52233		0.094841	0.011491	1	327960000			14170	3810	10312	10389	13788;13789	13788					0.1437870756551547
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		ENSG00000122786|ENST00000361675|CALD1;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	ENSG00000122786|ENST00000361675|CALD1	ENSG00000122786|ENST00000361675|CALD1	MULTI-MSMS	A375_MHC_IP_R1	1	787.8603515625	2	787.460939	1572.90732	-0.72371	-0.00056989	0.1234	9.7172E-05	-0.60031	-0.00047272	787.4608482984466	134.91	2.3986	134.91	134.52	136.92	0					139	46	5	0	0	0	0.73924	1	52194	52194		0	0	1	80268000			14171	3810	10312	10389	13790	13790					0.1437870756551547
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		ENSG00000122786|ENST00000361675|CALD1;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	ENSG00000122786|ENST00000361675|CALD1	ENSG00000122786|ENST00000361675|CALD1	MULTI-MSMS	A375_MHC_IP_R1	1	525.7090454101562	3	525.309718	1572.90732	-0.82763	-0.00043476	0.037893	1.9906E-05	-0.78973	-0.00041485	525.3095652827312	140.1	1.7896	140.1	139.01	140.8	0					59	34	3	0	0	0	0.73924	1	53830	53830		0.094841	0.094841	1	3371100			14172	3810	10312	10389	13791	13791					0.1437870756551547
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		ENSG00000122786|ENST00000361675|CALD1;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	ENSG00000122786|ENST00000361675|CALD1	ENSG00000122786|ENST00000361675|CALD1	MULTI-SECPEP	A375_MHC_IP_R1	1	787.8598022460938	2	787.460939	1572.90732	-0.7116	-0.00056035	0.10918	8.5979E-05	-0.60241	-0.00047437	787.4607780430337	134.18	1.1674	134.18	133.36	134.52	0					81	22	5	0	0	0	1.0015	1	51774	51774		0	0	1	41182000			14173	3810	10312	10389	13792	13792					0.1437870756551547
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		ENSG00000122786|ENST00000361675|CALD1;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	ENSG00000122786|ENST00000361675|CALD1	ENSG00000122786|ENST00000361675|CALD1	MULTI-SECPEP	A375_MHC_IP_R1	1	787.2047119140625	2	787.460939	1572.90732	-0.7518	-0.00059201	0.43746	0.00034448	-0.31434	-0.00024753	787.4611395272058	136.98	0.92542	136.98	136.56	137.49	0					26	17	3	0	0	0	1.0015	1	52601	52601		0	0	1	1092100			14174	3810	10312	10389	13793	13793					0.1437870756551547
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		ENSG00000122786|ENST00000361675|CALD1;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	ENSG00000122786|ENST00000361675|CALD1	ENSG00000122786|ENST00000361675|CALD1	MULTI-MSMS	A375_MHC_IP_R2	2	525.688720703125	3	525.309718	1572.90732	-0.39216	-0.000206	-0.11231	-5.9E-05	-0.50447	-0.000265	525.3095589765572	134.11	1.2722	134.28	133.4	134.67	0.16487					123	24	6	0	0	0	0.73924	4	52511	52511;52528;52746;52856		0.094841	0.011491	1	166710000			14175	3810	10312	10389	13794;13795;13796;13797	13794					0.1437870756551547
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		ENSG00000122786|ENST00000361675|CALD1;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	ENSG00000122786|ENST00000361675|CALD1	ENSG00000122786|ENST00000361675|CALD1	MULTI-MSMS	A375_MHC_IP_R2	2	525.7092895507812	3	525.309718	1572.90732	-0.36446	-0.00019146	-0.061685	-3.2404E-05	-0.42615	-0.00022386	525.3096229243879	134.84	4.2336	134.98	134.55	138.78	0.13901					268	82	7	0	0	0	0.73924	2	52960	52960;53165		0.094841	0.011491	1	321760000			14176	3810	10312	10389	13798;13799	13798					0.1437870756551547
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		ENSG00000122786|ENST00000361675|CALD1;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	ENSG00000122786|ENST00000361675|CALD1	ENSG00000122786|ENST00000361675|CALD1	MULTI-MSMS	A375_MHC_IP_R2	2	788.5015869140625	2	787.460939	1572.90732	-0.86918	-0.00068444	0.56994	0.00044881	-0.29924	-0.00023564	787.4611924468818	134.84	2.1394	134.98	134.6	136.74	0.13901					134	41	5	0	0	0	0.73891	3	53142	53142;53172;53232		0.26902	0	1	81769000			14177	3810	10312	10389	13800;13801;13802	13800					0.1437870756551547
FERSVKINP	9	Unmodified	_FERSVKINP_					0	0	0		ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	MULTI-MSMS	A375_MHC_IP_R2	2	546.207275390625	2	545.306198	1088.59784	-1.1215	-0.00061157	0.61785	0.00033692	-0.50366	-0.00027465	545.3064813300914	61.608	0.85691	62.353	61.919	62.776	0.74503					37	16	3	0	0	0	0.56584	1	23331	23331		22.736	6.8891	1	6239500			14178	1049	10313	10390	13803	13803					0.057088342259021374
FERSVKINP	9	Unmodified	_FERSVKINP_					0	0	0		ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	MULTI-MATCH	A375_MHC_IP_R1	1		2	545.306198	1088.59784	-0.44784	-0.00024421	0.52195	0.00028462	0.074109	4.0412E-05	545.3065275628123	62.314	0.71663	62.314	62.046	62.762	0	-0.019241	-3.8678E-05	NaN	22.736	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6960900			14179	1049	10313	10390							0.057088342259021374
FESDADEKY	9	Unmodified	_FESDADEKY_					0	0	0			REV__PRR23C|p.E156K|1|0.5|ENSG00000233701|chr3:139044155-139044155|C/T|missense_variant	REV__PRR23C|p.E156K|1|0.5|ENSG00000233701|chr3:139044155-139044155|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	552.15576171875	2	552.230019	1102.44548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.416	1	53.168	52.668	53.668	0.75225								0	0	0	0.15069	1	19756	19756		20.454	6.9457	1		+		14180	27844	10314	10391	13804	13804					-0.10164031032172716
FESDGIESLKE	11	Unmodified	_FESDGIESLKE_					0	0	0			REV__tr|U7T3W5|U7T3W5_FUSNUProteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00640PE=4SV=1	REV__tr|U7T3W5|U7T3W5_FUSNUProteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00640PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	627.6980590820312	2	627.298433	1252.58231	-0.85295	-0.00053506	0.21762	0.00013651	-0.63533	-0.00039854	627.2979194717399	72.923	1.8326	73.658	73.073	74.905	0.73541					46	35	2	0	0	0	0.66366	1	27622	27622		18.373	1.2602	1	4364900	+		14181	28788	10315	10392	13805	13805					-0.033875418724846895
FESDMHSSD	9	Unmodified	_FESDMHSSD_					0	0	0			REV__ENSG00000169403|ENST00000373857|PTAFR	REV__ENSG00000169403|ENST00000373857|PTAFR	MULTI-MSMS	A375_MHC_IP_R2	2	528.16357421875	2	527.692746	1053.37094	-0.80271	-0.00042358	1.7816	0.00094016	0.97894	0.00051658	527.6940882487536	60.981	0.55606	61.726	61.464	62.02	0.74503					24	10	3	0	0	0	0.65721	1	23156	23156		10.824	2.9138	1	4665700	+		14182	20930	10316	10393	13806	13806					-0.1536111711520789
FESDMHSSD	9	Unmodified	_FESDMHSSD_					0	0	0			REV__ENSG00000169403|ENST00000373857|PTAFR	REV__ENSG00000169403|ENST00000373857|PTAFR	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	527.692746	1053.37094	-0.52302	-0.00027599	1.9183	0.0010123	1.3953	0.00073629	527.6941621182593	61.571	0.56042	61.571	61.331	61.891	0	-0.077506	7.8796E-05	NaN	10.824	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5479500	+		14183	20930	10316	10393							-0.1536111711520789
FESDMHSSD	9	Unmodified	_FESDMHSSD_					0	0	0			REV__ENSG00000169403|ENST00000373857|PTAFR	REV__ENSG00000169403|ENST00000373857|PTAFR	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	527.692746	1053.37094	-0.80271	-0.00042358	1.7816	0.00094016	0.97894	0.00051658	527.6940882487536	60.981	0.55606	61.726	61.464	62.02	0.74503	0.077506	-6.5457E-05	NaN	10.824	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4665700	+		14184	20930	10316	10393							-0.1536111711520789
FESEELQNKL	10	Unmodified	_FESEELQNKL_					0	0	0			REV__nc|ENSG00000196535|Q92614-5|MYO18A	REV__nc|ENSG00000196535|Q92614-5|MYO18A	MULTI-SECPEP	A375_MHC_IP_R2	2	619.1661376953125	2	618.808968	1235.60338	-0.95838	-0.00059305	1.2946	0.00080108	0.33618	0.00020803	618.8093344755569	49.466	0.70766	50.224	49.741	50.449	0.75736					19	13	2	0	0	0	0.91556	1	18556	18556		14.838	5.4551	1	1902300	+		14185	22206	10317	10394	13807	13807					-0.00499531772948103
FESEFGKIY	9	Unmodified	_FESEFGKIY_					0	0	0		ENSG00000082781|ENST00000296181|ITGB5	ENSG00000082781|ENST00000296181|ITGB5	ENSG00000082781|ENST00000296181|ITGB5	MULTI-MSMS	A375_MHC_IP_R1	1	560.6717529296875	2	560.27149	1118.52843	-0.28842	-0.0001616	0.32194	0.00018037	0.033519	1.878E-05	560.271615554795	72.111	0.65857	72.111	71.866	72.524	0					27	12	3	0	0	0	0.0061124	2	26224	26224;26351		133.05	89.194	1	7881100			14186	1766	10318	10395	13808;13809	13808					-0.026096695135038317
FESEFGKIY	9	Unmodified	_FESEFGKIY_					0	0	0		ENSG00000082781|ENST00000296181|ITGB5	ENSG00000082781|ENST00000296181|ITGB5	ENSG00000082781|ENST00000296181|ITGB5	MULTI-MSMS	A375_MHC_IP_R2	2	560.7294311523438	2	560.27149	1118.52843	-0.92112	-0.00051608	0.21215	0.00011886	-0.70897	-0.00039722	560.2715799997546	71.499	0.76052	72.233	71.806	72.567	0.73421					31	14	3	0	0	0	0.0090297	1	27150	27150		99.755	51.409	1	7965100			14187	1766	10318	10395	13810	13810					-0.026096695135038317
FESEVESLSVQ	11	Unmodified	_FESEVESLSVQ_					0	0	0		ENSG00000088038|ENST00000221232|CNOT3	ENSG00000088038|ENST00000221232|CNOT3	ENSG00000088038|ENST00000221232|CNOT3	MULTI-SECPEP	A375_MHC_IP_R2	2	626.6934814453125	2	627.298433	1252.58231	-0.85295	-0.00053506	0.21762	0.00013651	-0.63533	-0.00039854	627.2979194717399	72.923	1.8326	73.658	73.073	74.905	0.73541					46	35	2	0	0	0	0.9574	1	27709	27709		19.362	9.818	1	4364900			14188	1883	10319	10396	13811	13811					-0.03387541872461952
FESFNAISAF	10	Unmodified	_FESFNAISAF_					0	0	0			REV__nc|ENSG00000174233|O43306-2|ADCY6;REV__nc|ENSG00000173175|O95622-2|ADCY5	REV__nc|ENSG00000174233|O43306-2|ADCY6	MULTI-SECPEP	A375_MHC_IP_R2	2	567.1692504882812	2	566.769114	1131.52368	-0.41538	-0.00023542	-0.11809	-6.6932E-05	-0.53347	-0.00030235	566.7690832455283	48.576	0.55804	49.333	49.03	49.588	0.75737					22	10	3	0	0	0	0.64716	1	18257	18257		22.736	22.736	1	2425200	+		14189	21275;21200	10320	10397	13812	13812					-0.03682553656290111
FESLLEKRETW	11	Unmodified	_FESLLEKRETW_					0	0	0		ENST00000529498.1_1_11:124545160-124545680:+|nuORF	ENST00000529498.1_1_11:124545160-124545680:+|nuORF	ENST00000529498.1_1_11:124545160-124545680:+|nuORF	MSMS	A375_MHC_IP_R2	2	719.52685546875	2	719.372266	1436.72998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.516	1	43.288	42.788	43.788	0.7724								0	0	0	0.16307	1	15817	15817		2.7352	1.0826	1				14190	13128	10321	10398	13813	13813					0.029083944521744343
FESNAIMKKY	10	Unmodified	_FESNAIMKKY_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	A375_MHC_IP_R1	1	411.277587890625	3	410.877758	1229.61144	0.24082	9.8948E-05	-0.54903	-0.00022558	-0.30821	-0.00012664	410.8775131943984	35.863	0.4583	35.863	35.625	36.084	0					18	8	3	0	0	0	0.41513	1	11970	11970		53.47	53.47	1	3643100			14191	7927	10322	10399	13814	13814					0.0058232394283095346
FESNAIMKKY	10	Unmodified	_FESNAIMKKY_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	A375_MHC_IP_R2	2	411.2774353027344	3	410.877758	1229.61144	-0.20275	-8.3304E-05	-0.51608	-0.00021205	-0.71883	-0.00029535	410.8775715979403	34.989	0.50505	35.752	35.576	36.081	0.76338					15	9	2	0	0	0	0.20175	1	12689	12689		60.899	60.899	1	5388700			14192	7927	10322	10399	13815	13815					0.0058232394283095346
FETINQPID	9	Unmodified	_FETINQPID_					0	0	0			REV__ENSG00000176547|ENST00000319856|OR4C3	REV__ENSG00000176547|ENST00000319856|OR4C3	MSMS	A375_MHC_IP_R1	1	538.6638793945312	2	538.766571	1075.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.526	1	34.526	34.026	35.026	0								0	0	0	0.15486	1	11390	11390		7.609	0.88579	1		+		14193	21411	10323	10400	13816	13816					-0.016148575188935865
FETLWWKSF	9	Unmodified	_FETLWWKSF_					0	0	0			REV__DNAH9|p.S4145Ffs*44|1|0.38|ENSG00000007174|chr17:11934016-11934016|C/-|frameshift_variant	REV__DNAH9|p.S4145Ffs*44|1|0.38|ENSG00000007174|chr17:11934016-11934016|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	622.7086181640625	2	622.310949	1242.60735	-0.96489	-0.00060046	-1.1241	-0.00069956	-2.089	-0.0013	622.3092410862414	49.216	0.65861	49.973	49.588	50.247	0.75737					34	12	4	0	0	0	0.65527	1	18504	18504		22.736	10.496	1	3370700	+		14194	16019	10324	10401	13817	13817					-0.0042539748858416715
FETVGPLLI	9	Unmodified	_FETVGPLLI_					0	0	0			REV__ENSG00000188324|ENST00000358433|OR6C6	REV__ENSG00000188324|ENST00000358433|OR6C6	MULTI-MSMS	A375_MHC_IP_R1	1	988.8939208984375	1	988.57136	987.564084	0.37726	0.00037295	0.98374	0.0009725	1.361	0.0013454	988.5723434866101	128.07	0.55623	128.07	127.87	128.43	0					22	10	3	0	0	0	0.64808	1	49083	49083		11.64	0.81637	1	38829000	+		14195	22085	10325	10402	13818	13818					0.06980412734139918
FETWRCDGQED	11	Unmodified	_FETWRCDGQED_					0	0	0		ENST00000590278.1_1_19:33696051-33698478:+|nuORF;ENSG00000130881|ENST00000253193|LRP3	ENST00000590278.1_1_19:33696051-33698478:+|nuORF	ENST00000590278.1_1_19:33696051-33698478:+|nuORF	MSMS	A375_MHC_IP_R2	2	693.3565063476562	2	693.274966	1384.53538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.336	1	86.072	85.572	86.572	0.73601								0	0	0	0.16249	1	32441	32441		5.7319	0	1				14196	4292	10326	10403	13819	13819					-0.14150724695286954
FETYPIRPNLE	11	Unmodified	_FETYPIRPNLE_					0	0	0			REV__ENSG00000114166|ENST00000263754|KAT2B	REV__ENSG00000114166|ENST00000263754|KAT2B	MULTI-MSMS	A375_MHC_IP_R1	1	690.2531127929688	2	689.853709	1377.69287	-0.70517	-0.00048647	0.047003	3.2425E-05	-0.65817	-0.00045404	689.8537071075656	53.292	0.65905	53.292	52.946	53.605	0					25	12	3	0	0	0	0.47886	1	18966	18966		32.786	6.5175	1	6138400	+		14197	17815	10327	10404	13820	13820					0.019127229064451967
FETYPIRPNLE	11	Unmodified	_FETYPIRPNLE_					0	0	0			REV__ENSG00000114166|ENST00000263754|KAT2B	REV__ENSG00000114166|ENST00000263754|KAT2B	MULTI-MSMS	A375_MHC_IP_R2	2	690.2531127929688	2	689.853709	1377.69287	-1.1462	-0.00079072	0.2966	0.00020461	-0.84961	-0.0005861	689.8537855699166	52.659	0.65707	53.411	53.032	53.69	0.75225					28	12	3	0	0	0	0.57844	1	19829	19829		24.991	4.5764	1	6911300	+		14198	17815	10327	10404	13821	13821					0.019127229064451967
FETYPIRPNLE	11	Unmodified	_FETYPIRPNLE_					0	0	0			REV__ENSG00000114166|ENST00000263754|KAT2B	REV__ENSG00000114166|ENST00000263754|KAT2B	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	689.853709	1377.69287	-0.70517	-0.00048647	0.047003	3.2425E-05	-0.65817	-0.00045404	689.8537071075656	53.292	0.65905	53.292	52.946	53.605	0	-0.059345	-0.00013457	NaN	32.786	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6138400	+		14199	17815	10327	10404							0.019127229064451967
FETYPIRPNLE	11	Unmodified	_FETYPIRPNLE_					0	0	0			REV__ENSG00000114166|ENST00000263754|KAT2B	REV__ENSG00000114166|ENST00000263754|KAT2B	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	689.853709	1377.69287	-1.1462	-0.00079072	0.2966	0.00020461	-0.84961	-0.0005861	689.8537855699166	52.659	0.65707	53.411	53.032	53.69	0.75225	0.059345	0.0002098	NaN	32.786	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6911300	+		14200	17815	10327	10404							0.019127229064451967
FEVDNGDYGW	10	Unmodified	_FEVDNGDYGW_					0	0	0			REV__ENSG00000094755|ENST00000265294|GABRP	REV__ENSG00000094755|ENST00000265294|GABRP	MULTI-MSMS	A375_MHC_IP_R1	1	601.69775390625	2	601.24346	1200.47237	-0.3113	-0.00018717	-0.096735	-5.8161E-05	-0.40804	-0.00024533	601.2431216541231	101.74	0.75928	101.74	101.34	102.1	0					38	14	4	0	0	0	0.69306	1	37476	37476		13.906	2.4113	1	6232500	+		14201	16985	10328	10405	13822	13822					-0.11984922420992916
FEVDNGDYGW	10	Unmodified	_FEVDNGDYGW_					0	0	0			REV__ENSG00000094755|ENST00000265294|GABRP	REV__ENSG00000094755|ENST00000265294|GABRP	MULTI-MSMS	A375_MHC_IP_R2	2	601.6971435546875	2	601.24346	1200.47237	-0.37464	-0.00022525	-0.22275	-0.00013393	-0.59739	-0.00035918	601.2431052837908	101.15	1.072	101.92	101.5	102.57	0.76428					38	20	3	0	0	0	0.70651	1	38409	38409		9.3831	1.7742	1	4576500	+		14202	16985	10328	10405	13823	13823					-0.11984922420992916
FEVDNGDYGW	10	Unmodified	_FEVDNGDYGW_					0	0	0			REV__ENSG00000094755|ENST00000265294|GABRP	REV__ENSG00000094755|ENST00000265294|GABRP	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	601.24346	1200.47237	-0.3113	-0.00018717	-0.096735	-5.8161E-05	-0.40804	-0.00024533	601.2431216541231	101.74	0.75928	101.74	101.34	102.1	0	-0.085545	5.5416E-05	NaN	13.906	38	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6232500	+		14203	16985	10328	10405							-0.11984922420992916
FEVEDCDYI	9	Unmodified	_FEVEDCDYI_					0	0	0		nc|ENSG00000158104|P32754-2|HPD;nc|ENSG00000158104|P32754|HPD;ENSG00000158104|ENST00000289004|HPD	nc|ENSG00000158104|P32754-2|HPD	nc|ENSG00000158104|P32754-2|HPD	MULTI-SECPEP	A375_MHC_IP_R2	2	567.3847045898438	2	566.728797	1131.44304	-0.23691	-0.00013426	-0.74036	-0.00041958	-0.97727	-0.00055385	566.7281250566159	93.875	0.5563	94.619	94.262	94.818	0.74473					15	10	2	0	0	0	0.80005	1	35748	35748		4.756	2.6963	1	1351700			14204	6285	10329	10406	13824	13824					-0.11742202761502085
FEVESLFQKY	10	Unmodified	_FEVESLFQKY_					0	0	0		MAP3K1|p.T946Nfs*57|1|0.23|ENSG00000095015|chr5:56882036-56882037|AC/-|frameshift_variant;ENSG00000095015|ENST00000399503|MAP3K1	MAP3K1|p.T946Nfs*57|1|0.23|ENSG00000095015|chr5:56882036-56882037|AC/-|frameshift_variant	MAP3K1|p.T946Nfs*57|1|0.23|ENSG00000095015|chr5:56882036-56882037|AC/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	645.7245483398438	2	645.324254	1288.63395	-0.27688	-0.00017868	0.085843	5.5397E-05	-0.19104	-0.00012328	645.3243552639391	105.9	0.71592	105.9	105.7	106.42	0					25	13	3	0	0	0	0.011522	1	38896	38896		117.84	90.209	1	5100000			14205	2033	10330	10407	13825	13825					0.0011824661210084741
FEVESLFQKY	10	Unmodified	_FEVESLFQKY_					0	0	0		MAP3K1|p.T946Nfs*57|1|0.23|ENSG00000095015|chr5:56882036-56882037|AC/-|frameshift_variant;ENSG00000095015|ENST00000399503|MAP3K1	MAP3K1|p.T946Nfs*57|1|0.23|ENSG00000095015|chr5:56882036-56882037|AC/-|frameshift_variant	MAP3K1|p.T946Nfs*57|1|0.23|ENSG00000095015|chr5:56882036-56882037|AC/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	645.7246704101562	2	645.324254	1288.63395	-0.64403	-0.00041561	0.29296	0.00018906	-0.35107	-0.00022656	645.3243610505608	105.18	0.81233	105.94	105.51	106.33	0.76308					31	15	3	0	0	0	0.0042118	1	39764	39764		136.39	99.886	1	6287900			14206	2033	10330	10407	13826	13826					0.0011824661210084741
FEVFNTLAM	9	Unmodified	_FEVFNTLAM_					0	0	0		ENST00000415794.1_1_3:139212993-139213512:+|nuORF	ENST00000415794.1_1_3:139212993-139213512:+|nuORF	ENST00000415794.1_1_3:139212993-139213512:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1611328125	2	536.26261	1070.51067	-0.86202	-0.00046227	1.0666	0.000572	0.20462	0.00010973	536.2630834106396	52.8	0.75996	52.8	52.237	52.997	0					26	14	3	0	0	0	0.59098	1	18785	18785		21.537	0	1	5977800			14207	11681	10331	10408	13827	13827					-0.021767080400195482
FEVQHSEGY	9	Unmodified	_FEVQHSEGY_					0	0	0		ENSG00000072864|ENST00000396354|NDE1;nc|ENSG00000072864|Q9NXR1-1|NDE1	ENSG00000072864|ENST00000396354|NDE1	ENSG00000072864|ENST00000396354|NDE1	MULTI-SECPEP	A375_MHC_IP_R2	2	547.7029418945312	2	548.240721	1094.46689	-0.84159	-0.0004614	-0.30152	-0.00016531	-1.1431	-0.0006267	548.2408179535039	32.692	0.25314	33.429	33.265	33.518	0.73691					7	4	2	0	0	0	0.61452	1	11647	11647		26.268	4.7312	1	1424000			14208	1552	10332	10409	13828	13828					-0.07656601212784153
FEVQHSEGY	9	Unmodified	_FEVQHSEGY_					0	0	0		ENSG00000072864|ENST00000396354|NDE1;nc|ENSG00000072864|Q9NXR1-1|NDE1	ENSG00000072864|ENST00000396354|NDE1	ENSG00000072864|ENST00000396354|NDE1	MULTI-MATCH	A375_MHC_IP_R1	1		2	548.240721	1094.46689	-0.61941	-0.00033959	0.40995	0.00022475	-0.20946	-0.00011483	548.2406780281608	33.317	0.55788	33.317	32.887	33.445	0	-0.056082	0.00031713	NaN	26.268	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1839300			14209	1552	10332	10409							-0.07656601212784153
FEWLSQLRYYW	11	Unmodified	_FEWLSQLRYYW_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7;DNAH7|p.E1280Kfs*4|1|0.33|ENSG00000118997|chr2:195922186-195922186|T/-|frameshift_variant	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	A375_MHC_IP_R1	1	530.7313232421875	3	530.92951	1589.7667	-0.57697	-0.00030633	0.91271	0.00048458	0.33573	0.00017825	531.2637051842572	98.839	0.30458	98.839	98.711	99.015	0					7	5	2	0	0	0	1.001	1	36362	36362		0.50596	0.41111	1	469190			14210	3568	10333	10410	13829	13829					-0.004593089312493248
FEYAGKDNY	9	Unmodified	_FEYAGKDNY_					0	0	0		nc|ENSG00000289720|Q96J02-3|ITCH;ENSG00000078747|ENST00000374864|ITCH;nc|ENSG00000289720|Q96J02|ITCH	nc|ENSG00000289720|Q96J02-3|ITCH	nc|ENSG00000289720|Q96J02-3|ITCH	MULTI-SECPEP	A375_MHC_IP_R1	1	553.7037963867188	2	553.743096	1105.47164	-0.48287	-0.00026739	-0.77977	-0.00043179	-1.2626	-0.00069918	553.7430505338109	35.038	0.2037	35.038	34.912	35.116	0					6	3	2	0	0	0	0.65527	1	11632	11632		22.736	6.8891	1	2529000			14211	1682	10334	10411	13830	13830					-0.07687717070029976
FEYAGKDNY	9	Unmodified	_FEYAGKDNY_					0	0	0		nc|ENSG00000289720|Q96J02-3|ITCH;ENSG00000078747|ENST00000374864|ITCH;nc|ENSG00000289720|Q96J02|ITCH	nc|ENSG00000289720|Q96J02-3|ITCH	nc|ENSG00000289720|Q96J02-3|ITCH	MULTI-MSMS	A375_MHC_IP_R2	2	554.2049560546875	2	553.743096	1105.47164	-1.0479	-0.00058026	-0.34156	-0.00018913	-1.3894	-0.0007694	553.7430013446965	34.35	0.40844	35.102	34.904	35.312	0.75225					11	7	2	0	0	0	0.32092	1	12371	12371		29.082	5.9332	1	1521700			14212	1682	10334	10411	13831	13831					-0.07687717070029976
FEYDGKINAW	10	Unmodified	_FEYDGKINAW_					0	0	0		ENSG00000123213|ENST00000380985|NLN;ENST00000506539.5_1_5:65018131-65088776:+|nuORF	ENSG00000123213|ENST00000380985|NLN	ENSG00000123213|ENST00000380985|NLN	MULTI-SECPEP	A375_MHC_IP_R1	1	622.1947021484375	2	621.793121	1241.57169	-0.2962	-0.00018418	0.52533	0.00032665	0.22913	0.00014247	621.7934821568601	78.429	0.50526	78.429	78.201	78.707	0					16	9	3	0	0	0	0.050206	1	28632	28632		96.367	60.24	1	2200600			14213	3835	10335	10412	13832	13832					-0.03943479736244626
FEYDGKINAW	10	Unmodified	_FEYDGKINAW_					0	0	0		ENSG00000123213|ENST00000380985|NLN;ENST00000506539.5_1_5:65018131-65088776:+|nuORF	ENSG00000123213|ENST00000380985|NLN	ENSG00000123213|ENST00000380985|NLN	MULTI-SECPEP	A375_MHC_IP_R2	2	622.1934204101562	2	621.793121	1241.57169	-0.73709	-0.00045832	0.21547	0.00013398	-0.52162	-0.00032434	621.7931754384973	77.78	0.51128	78.523	78.315	78.827	0.74294					13	9	2	0	0	0	0.050206	1	29551	29551		96.367	69.483	1	2155700			14214	3835	10335	10412	13833	13833					-0.03943479736244626
FEYEYSQRW	9	Unmodified	_FEYEYSQRW_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-MSMS	A375_MHC_IP_R1	1	654.68798828125	2	654.288202	1306.56185	-0.71223	-0.000466	0.16728	0.00010945	-0.54495	-0.00035655	654.2881484635869	67.117	0.76736	67.117	66.836	67.603	0					39	14	4	0	0	0	0.010055	2	24284	24284;24348		125.53	100.54	1	18403000			14215	3405	10336	10413	13834;13835	13834					-0.07916667741642414
FEYEYSQRW	9	Unmodified	_FEYEYSQRW_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-MSMS	A375_MHC_IP_R2	2	654.6880493164062	2	654.288202	1306.56185	-0.94197	-0.00061632	0.41072	0.00026873	-0.53125	-0.00034759	654.2883920481094	66.651	0.86725	67.388	66.983	67.85	0.73631					38	16	4	0	0	0	0.0099679	3	25210	25184;25201;25210		121.53	101.08	1	11505000			14216	3405	10336	10413	13836;13837;13838	13838					-0.07916667741642414
FEYNENTRKY	10	Unmodified	_FEYNENTRKY_					0	0	0		ENSG00000085415|ENST00000399892|SEH1L;nc|ENSG00000085415|Q96EE3|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	MULTI-SECPEP	A375_MHC_IP_R2	2	455.0012512207031	3	455.214086	1362.62043	-0.57936	-0.00026373	-1.0647	-0.00048465	-1.644	-0.00074838	455.2139609731334	24.745	0.25236	25.389	25.212	25.465	0.64368					7	4	2	0	0	0	0.55784	1	8138	8138		42.068	27.111	1	2334700			14217	1811	10337	10414	13839	13839					-0.046376111671634135
FEYPDYDDY	9	Unmodified	_FEYPDYDDY_					0	0	0		nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	MSMS	A375_MHC_IP_R2	2	613.6466674804688	2	613.729852	1225.44515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.062	1	26.722	26.222	27.222	0.65992								0	0	0	0.15486	1	8775	8775		4.756	1.1595	1				14218	1669	10338	10415	13840	13840					-0.1585545075201935
FEYRDGPSL	9	Unmodified	_FEYRDGPSL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	A375_MHC_IP_R1	1	542.0399780273438	2	542.258914	1082.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.78	1	104.78	104.28	105.28	0								0	0	0	0.1499	1	38473	38473		21.747	6.9084	1		+		14219	19932	10339	10416	13841	13841					-0.03467724316078602
FFAFIIFERKY	11	Unmodified	_FFAFIIFERKY_					0	0	0			REV__tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	REV__tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	494.6715087890625	3	494.271096	1479.79146	-0.64502	-0.00031882	1.2222	0.00060411	0.57719	0.00028529	494.27177654104287	30.771	0.50587	30.771	30.553	31.059	0					27	9	4	0	0	0	0.7039	1	9798	9798		12.228	8.111	1	16804000	+		14220	28347	10340	10417	13842	13842					0.07075370942129666
FFAFIIFERKY	11	Unmodified	_FFAFIIFERKY_					0	0	0			REV__tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	REV__tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	494.271096	1479.79146	-0.76479	-0.00037801	1.1487	0.00056779	0.38395	0.00018978	494.6059172203878	30.001	0.55893	30.7	30.485	31.044	0.69872	-0.035625	-2.1827E-05	NaN	12.228	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14029000	+		14221	28347	10340	10417							0.07075370942129666
FFAGRLKF	8	Unmodified	_FFAGRLKF_					0	0	0			REV__ENST00000465626.1_1_3:31921129-32022434:-|nuORF	REV__ENST00000465626.1_1_3:31921129-32022434:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	493.6844482421875	2	493.284537	984.554522	-0.33596	-0.00016572	-0.13209	-6.516E-05	-0.46805	-0.00023088	493.28443967541136	61.689	0.71569	61.689	61.432	62.148	0					25	13	3	0	0	0	0.24504	1	22267	22267		78.445	35.477	1	6285800	+		14222	25025	10341	10418	13843	13843					0.06162689239260999
FFAGRLKF	8	Unmodified	_FFAGRLKF_					0	0	0			REV__ENST00000465626.1_1_3:31921129-32022434:-|nuORF	REV__ENST00000465626.1_1_3:31921129-32022434:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	493.6841125488281	2	493.284537	984.554522	-0.79496	-0.00039214	0.019994	9.863E-06	-0.77497	-0.00038228	493.2844277938096	60.622	0.71132	61.367	61.057	61.769	0.74504					27	13	3	0	0	0	0.48416	1	22940	22940		59.795	16.827	1	5045600	+		14223	25025	10341	10418	13844	13844					0.06162689239260999
FFAKWWDNINV	11	Unmodified	_FFAKWWDNINV_					0	0	0		ENST00000560192.5_1_15:91447248-91454469:+|nuORF;nc|ENSG00000196547|P49641-2|MAN2A2;nc|ENSG00000196547|P49641-1|MAN2A2;ENSG00000196547|ENST00000559717|MAN2A2	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	MSMS	A375_MHC_IP_R1	1	480.4720153808594	3	480.575067	1438.70337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.633	1	34.633	34.133	35.133	0								0	0	0	0.16269	1	11437	11437		4.7159	0.30977	1				14224	9056	10342	10419	13845	13845					0.0015675035151616612
FFALIHSIF	9	Unmodified	_FFALIHSIF_					0	0	0			REV__nc|ENSG00000048392|Q7LG56-2|RRM2B	REV__nc|ENSG00000048392|Q7LG56-2|RRM2B	MULTI-SECPEP	A375_MHC_IP_R2	2	365.27313232421875	3	365.539294	1093.59605	-0.36576	-0.0001337	1.5033	0.00054953	1.1376	0.00041583	365.87324454297186	56.927	0.66374	57.678	57.356	58.02	0.75014					30	12	5	0	0	0	0.75519	1	21452	21452		14.405	5.4291	1	4373400	+		14225	16369	10343	10420	13846	13846					0.05299825207930553
FFALLVLPQH	10	Unmodified	_FFALLVLPQH_					0	0	0			REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.0165124893605175|0.2188578600898351|2.22|472.0|108|3|anti-sense	REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.0165124893605175|0.2188578600898351|2.22|472.0|108|3|anti-sense	MSMS	A375_MHC_IP_R2	2	592.7734985351562	2	592.844959	1183.67537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.13	1	149.15	148.65	149.65	0.018707								0	0	0	0.15591	1	57891	57891		1.6526	0.17072	1		+		14226	26887	10344	10421	13847	13847					0.09087472162082122
FFDGDAYPWCL	11	Unmodified	_FFDGDAYPWCL_					0	0	0			REV__ENSG00000145975|ENST00000274673|FAM217A	REV__ENSG00000145975|ENST00000274673|FAM217A	MULTI-SECPEP	A375_MHC_IP_R2	2	1333.40185546875	1	1333.55579	1332.54851	0.26278	0.00035043	-0.018027	-2.404E-05	0.24475	0.00032639	1333.5563529710996	121.56	0.71091	122	121.57	122.28	0.44488					15	13	2	0	0	0	0.99921	1	46333	46333		3.2813	0	1	106650000	+		14227	19506	10345	10422	13848	13848					-0.10446241845215809
FFDNLLQD	8	Unmodified	_FFDNLLQD_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	A375_MHC_IP_R1	1	505.6745910644531	2	506.242732	1010.47091	-0.38524	-0.00019503	0.76928	0.00038944	0.38404	0.00019442	506.2431237095645	57.874	0.25425	57.874	57.72	57.974	0					5	4	2	0	0	0	0.88903	1	20787	20787		30.637	18.396	1	506930			14228	5930	10346	10423	13849	13849					-0.03390511719089773
FFEQHPPPHQ	10	Unmodified	_FFEQHPPPHQ_					0	0	0			REV__nc|ENSG00000166938|Q8TF46-2|DIS3L	REV__nc|ENSG00000166938|Q8TF46-2|DIS3L	MULTI-MSMS	A375_MHC_IP_R2	2	422.2687072753906	3	421.868362	1262.58326	-0.046427	-1.9586E-05	0.34069	0.00014373	0.29426	0.00012414	421.8686067039641	46.019	1.3675	46.784	46.403	47.77	0.76518					51	26	3	0	0	0	0.72014	1	17425	17425		1.5923	1.5923	1	7070200	+		14229	20719	10347	10424	13850	13850					-0.037532379222511736
FFETIKLLLW	10	Unmodified	_FFETIKLLLW_					0	0	0		ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	MULTI-MSMS	A375_MHC_IP_R2	2	655.781982421875	2	655.381374	1308.7482	-0.67237	-0.00044066	0.47485	0.00031121	-0.19752	-0.00012945	655.3827373548427	137.54	2.0749	137.63	137.3	139.37	0.083969					72	40	3	0	0	0	0.72378	1	54547	54547		1.6526	0	1	2350600			14230	3309	10348	10425	13851	13851					0.10617181164843714
FFFCLRNMWSL	11	Unmodified	_FFFCLRNMWSL_					0	0	0			REV__ENST00000415861.2_1_6:109688785-109688845:-|nuORF	REV__ENST00000415861.2_1_6:109688785-109688845:-|nuORF	MSMS	A375_MHC_IP_R2	2	488.4692687988281	3	488.570271	1462.68898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.245	1	66.982	66.482	67.482	0.73727								0	0	0	0.16305	1	25105	25105		2.8433	0.4085	1		+		14231	24525	10349	10426	13852	13852					-0.02385361392634877
FFFFFLFFFLR	11	Unmodified	_FFFFFLFFFLR_					0	0	0		ENST00000524930.1_1_6:130504375-130535627:-|nuORF	ENST00000524930.1_1_6:130504375-130535627:-|nuORF	ENST00000524930.1_1_6:130504375-130535627:-|nuORF	MSMS	A375_MHC_IP_R2	2	526.6774291992188	3	526.616315	1576.82712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.552	1	93.291	92.791	93.791	0.73902								0	0	0	0.16332	1	35196	35196		1.4551	0	1				14232	13063	10350	10427	13853	13853					0.06177453189798143
FFFFVVPFFIR	11	Unmodified	_FFFFVVPFFIR_					0	0	0			REV__GABRB2|p.S500F|4|0.42|ENSG00000145864|chr5:161294121-161294121|G/A|missense_variant	REV__GABRB2|p.S500F|4|0.42|ENSG00000145864|chr5:161294121-161294121|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	733.8634643554688	2	733.405184	1464.79581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.658	1	92.393	91.893	92.893	0.7345								0	0	0	0.1629	1	34863	34863		3.5965	0.31518	1		+		14233	26659	10351	10428	13854	13854					0.08200880155686718
FFFLQPDTL	9	Unmodified	_FFFLQPDTL_					0	0	0		ENST00000272462.2_1_2:110841508-110841715:-|nuORF	ENST00000272462.2_1_2:110841508-110841715:-|nuORF	ENST00000272462.2_1_2:110841508-110841715:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	563.9970092773438	2	564.292225	1126.5699	-0.33392	-0.00018843	-0.72925	-0.00041151	-1.0632	-0.00059993	564.2917192483802	62.275	0.56265	62.275	61.994	62.557	0					15	10	2	0	0	0	0.53748	1	22430	22430		30.637	30.637	1	2766300			14234	10386	10352	10429	13855	13855					0.011675112458078729
FFFPKRKLL	9	Unmodified	_FFFPKRKLL_					0	0	0		ENSG00000145491|ENST00000274134|ROPN1L	ENSG00000145491|ENST00000274134|ROPN1L	ENSG00000145491|ENST00000274134|ROPN1L	MSMS	A375_MHC_IP_R1	1	399.6507568359375	3	399.249855	1194.72774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.7891	1	5.7891	5.2891	6.2891	0								0	0	0	0.15486	1	1321	1321		0.23584	0.076522	1				14235	5563	10353	10430	13856	13856					0.13816055295706064
FFFRKLTY	8	Unmodified	_FFFRKLTY_					0	0	0		ENSG00000184544|ENST00000571134|DHRS7C;nc|ENSG00000184544|A6NNS2|DHRS7C	ENSG00000184544|ENST00000571134|DHRS7C	ENSG00000184544|ENST00000571134|DHRS7C	MULTI-SECPEP	A375_MHC_IP_R1	1	374.3086853027344	3	374.542927	1120.60695	0.16638	6.2318E-05	-0.091448	-3.4251E-05	0.074937	2.8067E-05	374.54289706815905	19.359	0.20283	19.359	19.268	19.471	0					5	3	2	0	0	0	0.972	1	4720	4720		6.7232	5.1309	1	1144000			14236	8592	10354	10431	13857	13857					0.05147227582233427
FFGETSRNY	9	Unmodified	_FFGETSRNY_					0	0	0		ENST00000415279.1_1_1:106434930-106435587:+|nuORF	ENST00000415279.1_1_1:106434930-106435587:+|nuORF	ENST00000415279.1_1_1:106434930-106435587:+|nuORF	MSMS	A375_MHC_IP_R2	2	560.9466552734375	2	560.756538	1119.49852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.572	1	64.312	63.812	64.812	0.74022								0	0	0	0.15486	1	24105	24105		7.9102	0.3012	1				14237	11677	10355	10432	13858	13858					-0.05644608458851508
FFIAGRYEF	9	Unmodified	_FFIAGRYEF_					0	0	0		nc|ENSG00000104812|P13807-2|GYS1;ENSG00000104812|ENST00000323798|GYS1	nc|ENSG00000104812|P13807-2|GYS1	nc|ENSG00000104812|P13807-2|GYS1	MULTI-SECPEP	A375_MHC_IP_R1	1	575.6896362304688	2	575.290017	1148.56548	-0.17834	-0.0001026	-0.56495	-0.00032501	-0.74329	-0.00042761	575.290158451044	98.871	0.76141	98.871	98.507	99.268	0					30	14	3	0	0	0	0.24324	1	36318	36318		53.833	29.159	1	2257900			14238	2538	10356	10433	13859	13859					-0.0028595317710369272
FFIAGRYEF	9	Unmodified	_FFIAGRYEF_					0	0	0		nc|ENSG00000104812|P13807-2|GYS1;ENSG00000104812|ENST00000323798|GYS1	nc|ENSG00000104812|P13807-2|GYS1	nc|ENSG00000104812|P13807-2|GYS1	MULTI-MSMS	A375_MHC_IP_R2	2	575.6898803710938	2	575.290017	1148.56548	-0.22824	-0.0001313	-0.38925	-0.00022393	-0.61749	-0.00035523	575.7909477900266	98.085	0.86552	98.845	98.538	99.403	0.75977					22	16	2	0	0	0	0.29123	1	37203	37203		31.268	13.133	1	1887500			14239	2538	10356	10433	13860	13860					-0.0028595317710369272
FFIIIFCYE	9	Unmodified	_FFIIIFCYE_					0	0	0		ENSG00000214943|ENST00000399285|GPR33	ENSG00000214943|ENST00000399285|GPR33	ENSG00000214943|ENST00000399285|GPR33	MULTI-SECPEP	A375_MHC_IP_R2	2	399.2673645019531	3	398.868311	1193.5831	-0.2128	-8.4879E-05	-0.3462	-0.00013809	-0.559	-0.00022297	398.8678221022222	33.076	0.5103	33.829	33.584	34.095	0.75225					21	9	3	0	0	0	0.76187	1	11827	11827		7.609	4.2893	1	3255500			14240	9631	10357	10434	13861	13861					-0.00594373966441708
FFIMLPCTT	9	Unmodified	_FFIMLPCTT_					0	0	0		ENST00000441800.5_1_2:190560903-190569787:+|nuORF	ENST00000441800.5_1_2:190560903-190569787:+|nuORF	ENST00000441800.5_1_2:190560903-190569787:+|nuORF	MSMS	A375_MHC_IP_R1	1	536.6603393554688	2	536.763932	1071.51331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.36	1	133.36	132.86	133.86	0								0	0	0	0.14359	1	51424	51424		28.487	2.1456	1				14241	11987	10358	10435	13862	13862					-0.01958575906724036
FFIRLASLCKR	11	Unmodified	_FFIRLASLCKR_					0	0	0		ENST00000359039.4_1_9:21334854-21334980:-|nuORF	ENST00000359039.4_1_9:21334854-21334980:-|nuORF	ENST00000359039.4_1_9:21334854-21334980:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	677.7939453125	2	677.394825	1352.7751	-0.47876	-0.00032431	0.64847	0.00043927	0.16971	0.00011496	677.3950246647246	138.05	2.3247	138.13	137.86	140.19	0.083969					66	45	2	0	0	0	0.73807	1	54271	54271		2.9952	1.3426	1	2175400			14242	11006	10359	10436	13863	13863					0.11281966504361662
FFIWNLRKRTK	11	Unmodified	_FFIWNLRKRTK_					0	0	0			REV__ENST00000415807.6_1_3:172115292-172115697:+|nuORF	REV__ENST00000415807.6_1_3:172115292-172115697:+|nuORF	MSMS	A375_MHC_IP_R1	1	503.5485534667969	3	503.633139	1507.87759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.07	1	148.07	147.57	148.57	0								0	0	0	0.16358	1	56552	56552		0.094841	0	1		+		14243	24523	10360	10437	13864	13864					0.14396375567457653
FFKIALYLAQD	11	Unmodified	_FFKIALYLAQD_					0	0	0			REV__TRIM71|p.S474F|1|0.3|ENSG00000206557|chr3:32890625-32890625|C/T|missense_variant	REV__TRIM71|p.S474F|1|0.3|ENSG00000206557|chr3:32890625-32890625|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	443.9801025390625	3	443.579818	1327.71762	-0.13827	-6.1333E-05	1.2227	0.00054235	1.0844	0.00048102	443.5802505397163	23.211	0.30646	23.211	23.074	23.381	0					10	5	3	0	0	0	0.73016	1	6354	6354		8.7518	1.7147	1	5664100	+		14244	28905	10361	10438	13865	13865					0.06687402779789409
FFKKSRRVKM	10	Unmodified	_FFKKSRRVKM_					0	0	0		ENST00000409434.5_1_2:99938658-99944097:-|nuORF	ENST00000409434.5_1_2:99938658-99944097:-|nuORF	ENST00000409434.5_1_2:99938658-99944097:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	664.2946166992188	2	663.894992	1325.77543	-0.65763	-0.0004366	1.0564	0.00070133	0.39877	0.00026474	663.8955169652576	149.02	1.4123	149.04	148.21	149.62	0.018707					51	32	2	0	0	0	0.72716	1	57885	57885		0.40072	0.40072	1	202350			14245	11633	10362	10439	13866	13866					0.12557386224239053
FFLEEPLAEL	10	Unmodified	_FFLEEPLAEL_					0	0	0			REV__ENSG00000171017|ENST00000306708|LRRC8E	REV__ENSG00000171017|ENST00000306708|LRRC8E	MULTI-SECPEP	A375_MHC_IP_R1	1	604.7122802734375	2	604.315897	1206.61724	-0.33623	-0.00020319	-3.1445	-0.0019003	-3.4808	-0.0021035	604.313432844631	98.861	0.45936	98.861	98.607	99.067	0					12	8	2	0	0	0	0.74754	1	36345	36345		29.082	6.3453	1	1109100	+		14246	21037	10363	10440	13867	13867					0.02219745726142719
FFLFCFLWLW	10	Unmodified	_FFLFCFLWLW_					0	0	0			REV__ENST00000301923.13_2_22:40726871-40727081:+|nuORF	REV__ENST00000301923.13_2_22:40726871-40727081:+|nuORF	MSMS	A375_MHC_IP_R2	2	474.6403503417969	3	474.575351	1420.70422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.531	1	20.141	19.641	20.641	0.61029								0	0	0	0.15513	1	6010	6010		4.1895	0.31317	1		+		14247	23430	10364	10441	13868	13868					0.01069873466849458
FFLFCVSY	8	Unmodified	_FFLFCVSY_					0	0	0			REV__ENST00000367188.4_1_1:204373408-204373672:-|nuORF	REV__ENST00000367188.4_1_1:204373408-204373672:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	513.6555786132812	2	513.243689	1024.47283	-0.31693	-0.00016266	-0.95838	-0.00049188	-1.2753	-0.00065455	513.2430914858579	42.664	0.50502	42.664	42.336	42.841	0					13	9	2	0	0	0	0.72109	1	14793	14793		28.173	3.4993	1	1289700	+		14248	23963	10365	10442	13869	13869					-0.03843174234839353
FFLFCVSY	8	Unmodified	_FFLFCVSY_					0	0	0			REV__ENST00000367188.4_1_1:204373408-204373672:-|nuORF	REV__ENST00000367188.4_1_1:204373408-204373672:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	513.243689	1024.47283	-0.31693	-0.00016266	-0.95838	-0.00049188	-1.2753	-0.00065455	513.2430914858579	42.664	0.50502	42.664	42.336	42.841	0	0	0	NaN	28.173	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1289700	+		14249	23963	10365	10442							-0.03843174234839353
FFLGAGFG	8	Unmodified	_FFLGAGFG_					0	0	0		SLC6A2|p.S318F|1|0.3|ENSG00000103546|chr16:55694044-55694044|C/T|missense_variant	SLC6A2|p.S318F|1|0.3|ENSG00000103546|chr16:55694044-55694044|C/T|missense_variant	SLC6A2|p.S318F|1|0.3|ENSG00000103546|chr16:55694044-55694044|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	407.92779541015625	2	408.207964	814.401375	-0.24743	-0.000101	1.4879	0.00060739	1.2405	0.00050638	408.2100116245078	41.045	0.30509	41.819	41.59	41.895	0.77451					8	5	2	0	0	0	0.972	1	15174	15174		2.8892	0	1	911930			14250	29192	10366	10443	13870	13870					-0.013249258771793393
FFLKENTSPP	10	Unmodified	_FFLKENTSPP_					0	0	0			REV__ENST00000295754.9_1_3:30733908-30734106:+|nuORF	REV__ENST00000295754.9_1_3:30733908-30734106:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	590.2061767578125	2	590.305864	1178.59717	-0.36358	-0.00021462	-0.80033	-0.00047244	-1.1639	-0.00068706	590.3055131131273	34.435	0.75819	34.435	34.154	34.912	0					41	14	4	0	0	0	0.56097	1	11461	11461		23.79	2.0431	1	15807000	+		14251	23382	10367	10444	13871	13871					0.015019947861901528
FFLLWIKSWR	10	Unmodified	_FFLLWIKSWR_					0	0	0			REV__ENSG00000172782|ENST00000612771|FADS6	REV__ENSG00000172782|ENST00000612771|FADS6	MULTI-MSMS	A375_MHC_IP_R2	2	698.7999267578125	2	698.400433	1394.78631	-0.60484	-0.00042242	0.39019	0.00027251	-0.21465	-0.00014991	698.4004446623674	134.12	0.56317	134.29	133.96	134.52	0.16487					15	10	2	0	0	0	0.72078	1	52775	52775		2.9952	0.49676	1	5064800	+		14252	21170	10368	10445	13872	13872					0.10471111870151617
FFLLWIKSWR	10	Unmodified	_FFLLWIKSWR_					0	0	0			REV__ENSG00000172782|ENST00000612771|FADS6	REV__ENSG00000172782|ENST00000612771|FADS6	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	698.400433	1394.78631	-0.60484	-0.00042242	0.39019	0.00027251	-0.21465	-0.00014991	698.4004446623674	134.12	0.56317	134.29	133.96	134.52	0.16487	0.037785	0.00043346	NaN	2.9952	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5064800	+		14253	21170	10368	10445							0.10471111870151617
FFLNENCYI	9	Unmodified	_FFLNENCYI_					0	0	0		ENST00000467838.2_1_9:139334583-139334832:-|nuORF	ENST00000467838.2_1_9:139334583-139334832:-|nuORF	ENST00000467838.2_1_9:139334583-139334832:-|nuORF	MSMS	A375_MHC_IP_R2	2	581.7042846679688	2	581.765517	1161.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.673	1	45.442	44.942	45.942	0.7691								0	0	0	0.15468	1	16679	16679		13.906	1.3745	1				14254	12288	10369	10446	13873	13873					-0.05781609528366971
FFLNSNVMCN	10	Unmodified	_FFLNSNVMCN_					0	0	0			REV__FAM135B|p.S455F|1|0.69|ENSG00000147724|chr8:138153111-138153111|G/A|missense_variant	REV__FAM135B|p.S455F|1|0.69|ENSG00000147724|chr8:138153111-138153111|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	594.690185546875	2	594.762452	1187.51035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.434	1	43.434	42.934	43.934	0								0	0	0	0.15038	1	15096	15096		17.113	2.2746	1		+		14255	26608	10370	10447	13874	13874					-0.07590451031501289
FFLNSNVMCN	10	Unmodified	_FFLNSNVMCN_					0	0	0			REV__FAM135B|p.S455F|1|0.69|ENSG00000147724|chr8:138153111-138153111|G/A|missense_variant	REV__FAM135B|p.S455F|1|0.69|ENSG00000147724|chr8:138153111-138153111|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	594.6893310546875	2	594.762452	1187.51035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.684	1	43.457	42.957	43.957	0.7724								0	0	0	0.15391	1	15882	15882		8.1555	1.0538	1		+		14256	26608	10370	10447	13875	13875					-0.07590451031501289
FFLQNVGAAD	10	Unmodified	_FFLQNVGAAD_					0	0	0			REV__ENST00000546367.5_1_12:95452247-95461160:-|nuORF	REV__ENST00000546367.5_1_12:95452247-95461160:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	541.6795043945312	2	541.269281	1080.52401	-0.54032	-0.00029246	-0.76124	-0.00041203	-1.3016	-0.00070449	541.2688960810883	43.553	0.50744	43.553	43.3	43.808	0					11	9	2	0	0	0	0.55789	1	15202	15202		24.021	3.606	1	588540	+		14257	18136	10371	10448	13876	13876					-0.01303133936426093
FFLQNVGAAD	10	Unmodified	_FFLQNVGAAD_					0	0	0			REV__ENST00000546367.5_1_12:95452247-95461160:-|nuORF	REV__ENST00000546367.5_1_12:95452247-95461160:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	541.269281	1080.52401	-0.54032	-0.00029246	-0.76124	-0.00041203	-1.3016	-0.00070449	541.2688960810883	43.553	0.50744	43.553	43.3	43.808	0	0	0	NaN	24.021	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	588540	+		14258	18136	10371	10448							-0.01303133936426093
FFLSPRVLP	9	Unmodified	_FFLSPRVLP_					0	0	0		ENST00000397728.7_1_21:47609237-47609282:-|nuORF	ENST00000397728.7_1_21:47609237-47609282:-|nuORF	ENST00000397728.7_1_21:47609237-47609282:-|nuORF	MSMS	A375_MHC_IP_R2	2	359.2813720703125	3	359.21481	1074.6226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.553	1	31.272	30.772	31.772	0.71857								0	0	0	0.15486	1	10746	10746		10.151	0.076642	1				14259	11508	10372	10449	13877	13877					0.08827514099289147
FFMSFHACF	9	Unmodified	_FFMSFHACF_					0	0	0		ENST00000587084.5_1_19:32850301-32850421:+|nuORF	ENST00000587084.5_1_19:32850301-32850421:+|nuORF	ENST00000587084.5_1_19:32850301-32850421:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	379.89434814453125	3	379.494591	1135.46194	0.13838	5.2516E-05	-0.79079	-0.0003001	-0.65241	-0.00024758	379.4941951640363	64.166	0.61054	64.906	64.597	65.208	0.74022					21	11	3	0	0	0	0.55818	1	24329	24329		11.495	0	1	1356000			14260	13739	10373	10450	13878	13878					-0.10036899880765304
FFNEKKFLFI	10	Unmodified	_FFNEKKFLFI_					0	0	0		ENST00000372921.9_1_10:75135791-75135866:-|nuORF	ENST00000372921.9_1_10:75135791-75135866:-|nuORF	ENST00000372921.9_1_10:75135791-75135866:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	667.0956420898438	2	666.871174	1331.72779	-0.73813	-0.00049224	3.4278	0.0022859	2.6896	0.0017936	666.8729704729063	119.04	0.35731	119.62	119.48	119.84	0.58703					9	6	2	0	0	0	0.88918	1	45403	45403		18.146	11.045	1	8455600			14261	11217	10374	10451	13879	13879					0.07520010505049868
FFNPWFQK	8	Unmodified	_FFNPWFQK_					0	0	0		nc|ENSG00000290584|Q9P1P4|TAAR3P	nc|ENSG00000290584|Q9P1P4|TAAR3P	nc|ENSG00000290584|Q9P1P4|TAAR3P	MSMS	A375_MHC_IP_R1	1	371.729736328125	3	371.855394	1112.54435	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.387	1	17.387	16.887	17.887	0								0	0	0	0.16876	1	4081	4081		0.40072	0.16487	1				14262	14954	10375	10452	13880	13880					-0.007419184859600136
FFPLLPPPL	9	Unmodified	_FFPLLPPPL_					0	0	0			REV__ENST00000336702.7_1_11:118987385-118987784:+|nuORF	REV__ENST00000336702.7_1_11:118987385-118987784:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	521.2125244140625	2	520.812596	1039.61064	-0.80894	-0.00042131	0.98945	0.00051532	0.18051	9.4012E-05	520.8130331028771	136.51	0.35864	136.51	136.41	136.77	0					9	6	2	0	0	0	0.81122	1	52598	52598		0.6015	0	1	1777500	+		14263	23682	10376	10453	13881	13881					0.09241897356082518
FFQRYNIRFYW	11	Unmodified	_FFQRYNIRFYW_					0	0	0			REV__ENST00000589184.5_1_17:42266304-42268229:+|nuORF	REV__ENST00000589184.5_1_17:42266304-42268229:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	546.8582153320312	3	547.277132	1638.80957	-0.38128	-0.00020867	-2.4761	-0.0013551	-2.8574	-0.0015638	547.2760168732788	82.494	0.30415	82.494	82.418	82.722	0					6	5	2	0	0	0	1.0014	1	30215	30215		0.094841	0	1	1475300	+		14264	20868	10377	10454	13882	13882					0.015715059168314838
FFRETARKV	9	Unmodified	_FFRETARKV_					0	0	0			REV__NUAK1|p.S77F|1|0.2|ENSG00000074590|chr12:106138424-106138424|G/A|missense_variant	REV__NUAK1|p.S77F|1|0.2|ENSG00000074590|chr12:106138424-106138424|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	385.24871826171875	3	385.220735	1152.64038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.288	1	19.891	19.391	20.391	0.60308								0	0	0	0.15486	1	5909	5909		6.6304	0.43853	1		+		14265	27633	10378	10455	13883	13883					0.07016229354121606
FFRRRRRTRGV	11	Unmodified	_FFRRRRRTRGV_					0	0	0		ENST00000394833.6_1_4:103265936-103266233:-|nuORF	ENST00000394833.6_1_4:103265936-103266233:-|nuORF	ENST00000394833.6_1_4:103265936-103266233:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	754.352294921875	2	753.953084	1505.89161	-0.8631	-0.00065074	0.076775	5.7885E-05	-0.78633	-0.00059285	753.9528903517855	143.14	0.80724	143.14	142.64	143.45	0					40	15	4	0	0	0	0.73902	1	54893	54893		0.30703	0.30703	1	8087900			14266	11459	10379	10456	13884	13884					0.1589046583912932
FFRRRRRTRGV	11	Unmodified	_FFRRRRRTRGV_					0	0	0		ENST00000394833.6_1_4:103265936-103266233:-|nuORF	ENST00000394833.6_1_4:103265936-103266233:-|nuORF	ENST00000394833.6_1_4:103265936-103266233:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	754.3521728515625	2	753.953084	1505.89161	-0.69242	-0.00052206	0.09626	7.2576E-05	-0.59616	-0.00044948	753.952957985599	143.18	0.70895	143.22	142.74	143.45	0.030731					45	13	4	0	0	0	1.0014	1	55947	55947		0.30703	0	1	9565000			14267	11459	10379	10456	13885	13885					0.1589046583912932
FFRRRRRTRGV	11	Unmodified	_FFRRRRRTRGV_					0	0	0		ENST00000394833.6_1_4:103265936-103266233:-|nuORF	ENST00000394833.6_1_4:103265936-103266233:-|nuORF	ENST00000394833.6_1_4:103265936-103266233:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	753.953084	1505.89161	-0.8631	-0.00065074	0.076775	5.7885E-05	-0.78633	-0.00059285	753.9528903517855	143.14	0.80724	143.14	142.64	143.45	0	-0.036905	-1.4444E-05	NaN	0.30703	40	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8087900			14268	11459	10379	10456							0.1589046583912932
FFSEREASF	9	Unmodified	_FFSEREASF_					0	0	0		nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;nc|ENSG00000117676|Q15418-3|RPS6KA1	nc|ENSG00000117676|Q15418-4|RPS6KA1	nc|ENSG00000117676|Q15418-4|RPS6KA1	MULTI-MSMS	A375_MHC_IP_R1	1	560.6585693359375	2	560.258914	1118.50327	-0.50689	-0.00028399	-0.50342	-0.00028205	-1.0103	-0.00056603	560.2588459228297	61.35	2.9647	61.35	60.77	63.735	0					152	57	5	0	0	0	0.0098859	5	22076	22076;22307;22442;22630;22884		117.76	73.988	1	65167000			14269	3506	10380	10457	13886;13887;13888;13889;13890	13886					-0.051237243160812795
FFSEREASF	9	Unmodified	_FFSEREASF_					0	0	0		nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;nc|ENSG00000117676|Q15418-3|RPS6KA1	nc|ENSG00000117676|Q15418-4|RPS6KA1	nc|ENSG00000117676|Q15418-4|RPS6KA1	MULTI-MSMS	A375_MHC_IP_R2	2	560.65869140625	2	560.258914	1118.50327	-0.93795	-0.00052549	-0.16253	-9.1061E-05	-1.1005	-0.00061655	560.258980601036	60.549	2.5847	61.294	60.751	63.336	0.74503					112	50	3	0	0	0	0.0094735	5	22908	22856;22908;23143;23198;23712		107.1	63.327	1	65715000			14270	3506	10380	10457	13891;13892;13893;13894;13895	13892					-0.051237243160812795
FFSEREASF	9	Unmodified	_FFSEREASF_					0	0	0		nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;nc|ENSG00000117676|Q15418-3|RPS6KA1	nc|ENSG00000117676|Q15418-4|RPS6KA1	nc|ENSG00000117676|Q15418-4|RPS6KA1	MSMS	A375_MHC_IP_R2	2	560.2135620117188	2	560.258914	1118.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.659	1	63.402	62.902	63.902	0.74263								0	0	0	0.15331	1	23751	23751		16.149	0.30192	1				14271	3506	10380	10457	13896	13896					-0.051237243160812795
FFSNSYGLW	9	Unmodified	_FFSNSYGLW_					0	0	0			REV__ENSG00000157219|ENST00000287907|HTR5A	REV__ENSG00000157219|ENST00000287907|HTR5A	MULTI-SECPEP	A375_MHC_IP_R1	1	561.1860961914062	2	560.758549	1119.50255	-0.49087	-0.00027526	2.2597	0.0012671	1.7688	0.00099187	560.7597155829561	64.115	0.60725	64.115	63.837	64.444	0					13	11	2	0	0	0	0.73363	1	23242	23242		10.824	0	1	696520	+		14272	20020	10381	10458	13897	13897					-0.052425189651330584
FFSTDPRTYI	10	Unmodified	_FFSTDPRTYI_					0	0	0			REV__OR4E2|p.S266F|1|0.21|ENSG00000221977|chr14:21665879-21665879|C/T|missense_variant	REV__OR4E2|p.S266F|1|0.21|ENSG00000221977|chr14:21665879-21665879|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	416.94183349609375	3	416.208273	1245.60299	-0.37312	-0.0001553	1.3333	0.00055491	0.96013	0.00039962	416.5428752140111	24.433	0.96491	25.077	24.857	25.822	0.64368					29	18	2	0	0	0	0.91442	1	8101	8101		10.315	0	1	3241000	+		14273	27670	10382	10459	13898	13898					-0.009989067021251685
FFTKQHGTASP	11	Unmodified	_FFTKQHGTASP_					0	0	0			REV__OR6X1|p.S237F|1|0.24|ENSG00000221931|chr11:123753809-123753809|G/A|missense_variant	REV__OR6X1|p.S237F|1|0.24|ENSG00000221931|chr11:123753809-123753809|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	407.63629150390625	3	407.540134	1219.59857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.746	1	21.356	20.856	21.856	0.61029								0	0	0	0.15837	1	6483	6483		8.7518	2.1283	1		+		14274	27698	10383	10460	13899	13899					-0.002443711250407432
FFTNSSLNLP	10	Unmodified	_FFTNSSLNLP_					0	0	0		BCL10|p.S167F|1|0.29|ENSG00000142867|chr1:85267829-85267829|G/A|missense_variant	BCL10|p.S167F|1|0.29|ENSG00000142867|chr1:85267829-85267829|G/A|missense_variant	BCL10|p.S167F|1|0.29|ENSG00000142867|chr1:85267829-85267829|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	570.6635131835938	2	570.290214	1138.56587	-0.57114	-0.00032572	0.49672	0.00028327	-0.074424	-4.2443E-05	570.2905672626147	26.115	1.0645	26.115	25.46	26.524	0					34	20	2	0	0	0	0.6502	1	7437	7437		17.113	4.8722	1	4965400			14275	229	10384	10461	13900	13900					0.0021342175209611014
FFVFVLKF	8	Unmodified	_FFVFVLKF_					0	0	0		ENST00000261716.7_1_17:27875760-27875841:+|nuORF	ENST00000261716.7_1_17:27875760-27875841:+|nuORF	ENST00000261716.7_1_17:27875760-27875841:+|nuORF	MSMS	A375_MHC_IP_R2	2	523.7232055664062	2	523.807314	1045.60008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.987	1	53.738	53.238	54.238	0.75105								0	0	0	0.16876	1	19988	19988		12.532	0.89125	1				14276	10288	10385	10462	13901	13901					0.07909914701667731
FFWFWVCWHC	10	Unmodified	_FFWFWVCWHC_					0	0	0			REV__ENST00000346603.4_1_17:21075288-21081576:+|nuORF	REV__ENST00000346603.4_1_17:21075288-21081576:+|nuORF	MSMS	A375_MHC_IP_R2	2	487.439697265625	3	487.540423	1459.59944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.621	1	23.251	22.751	23.751	0.63014								0	0	0	0.15637	1	7196	7196		0.15932	0.064481	1		+		14277	23776	10386	10463	13902	13902					-0.11197571281354612
FFWFWVCWHC	10	Unmodified	_FFWFWVCWHC_					0	0	0			REV__ENST00000346603.4_1_17:21075288-21081576:+|nuORF	REV__ENST00000346603.4_1_17:21075288-21081576:+|nuORF	MSMS	A375_MHC_IP_R2	2	487.4398498535156	3	487.540423	1459.59944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.176	1	23.806	23.306	24.306	0.63014								0	0	0	0.15637	1	7416	7416		0.15932	0.075971	1		+		14278	23776	10386	10463	13903	13903					-0.11197571281354612
FFYIFKEPYFF	11	Unmodified	_FFYIFKEPYFF_					0	0	0		tr|U7T570|U7T570_FUSNUDUF4271domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00465PE=4SV=1	tr|U7T570|U7T570_FUSNUDUF4271domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00465PE=4SV=1	tr|U7T570|U7T570_FUSNUDUF4271domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00465PE=4SV=1	MSMS	A375_MHC_IP_R2	2	516.5932006835938	3	516.591835	1546.75368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.37146	1	0.8419	0.3419	1.3419	0.47044								0	0	0	0.16353	1	127	127		0.094841	0	1				14279	30014	10387	10464	13904	13904					0.0021685995666302915
FGADTIGQR	9	Unmodified	_FGADTIGQR_					0	0	0		ENSG00000100154|ENST00000397906|TTC28;ENST00000468807.1_1_22:29025506-29075759:-|nuORF	ENSG00000100154|ENST00000397906|TTC28	ENSG00000100154|ENST00000397906|TTC28	MULTI-MSMS	A375_MHC_IP_R2	2	482.671875	2	482.745973	963.477394	-0.63936	-0.00030865	-0.2081	-0.00010046	-0.84746	-0.00040911	482.74581355464267	32.685	0.55937	33.422	33.112	33.671	0.73691					17	10	2	0	0	0	0.38603	1	11646	11646		25.399	1.3787	1	2172100			14280	2128	10388	10465	13905	13905					-0.005805737677064826
FGALGWNFPYE	11	Unmodified	_FGALGWNFPYE_					0	0	0		DNAH5|p.I4208F|1|0.35|ENSG00000039139|chr5:13717398-13717398|T/A|missense_variant	DNAH5|p.I4208F|1|0.35|ENSG00000039139|chr5:13717398-13717398|T/A|missense_variant	DNAH5|p.I4208F|1|0.35|ENSG00000039139|chr5:13717398-13717398|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	650.1635131835938	2	650.803488	1299.59242	-0.05418	-3.5261E-05	1.326	0.00086295	1.2718	0.00082769	650.8040951174285	48.151	0.35511	48.151	48.02	48.375	0					10	6	2	0	0	0	0.98591	1	16942	16942		9.3831	0	1	1382100			14281	767	10389	10466	13906	13906					-0.045388893565814215
FGALSQLARGP	11	Unmodified	_FGALSQLARGP_					0	0	0			REV__ENST00000302904.8_1_17:42298591-42298771:-|nuORF	REV__ENST00000302904.8_1_17:42298591-42298771:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	373.94366455078125	3	372.876857	1115.60874	0.50854	0.00018962	-0.83918	-0.00031291	-0.33064	-0.00012329	372.8770035934511	35.496	1.2215	35.496	34.963	36.184	0					50	23	4	0	0	0	0.72585	1	11801	11801		12.856	1.957	1	8392000	+		14282	23440	10390	10467	13907	13907					0.05556236600182274
FGAPGRVEL	9	Unmodified	_FGAPGRVEL_					0	0	0		ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-4|OBSL1	ENSG00000124006|ENST00000404537|OBSL1	ENSG00000124006|ENST00000404537|OBSL1	MULTI-MSMS	A375_MHC_IP_R1	1	473.66119384765625	2	473.261259	944.507966	-0.51825	-0.00024527	0.11661	5.5187E-05	-0.40164	-0.00019008	473.2613565237101	58.403	0.6598	58.403	58.126	58.786	0					33	12	4	0	0	0	0.050868	1	20965	20965		63.961	11.692	1	9821700			14283	3867	10391	10468	13908	13908					0.033492046173250856
FGAPGRVEL	9	Unmodified	_FGAPGRVEL_					0	0	0		ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-4|OBSL1	ENSG00000124006|ENST00000404537|OBSL1	ENSG00000124006|ENST00000404537|OBSL1	MULTI-MSMS	A375_MHC_IP_R2	2	473.6606140136719	2	473.261259	944.507966	-0.88362	-0.00041818	0.2792	0.00013213	-0.60442	-0.00028605	473.26133449306093	57.516	0.60972	58.265	58.019	58.629	0.74894					25	11	3	0	0	0	0.06083	1	21746	21746		60.074	7.8056	1	10687000			14284	3867	10391	10468	13909	13909					0.033492046173250856
FGDSEGPTTL	10	Unmodified	_FGDSEGPTTL_					0	0	0			REV__ENST00000573773.5_1_16:4411919-4414432:-|nuORF	REV__ENST00000573773.5_1_16:4411919-4414432:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	513.6538696289062	2	512.235104	1022.45566	-0.73622	-0.00037712	0.034097	1.7466E-05	-0.70212	-0.00035965	512.2350956621469	62.917	1.419	63.659	63.13	64.549	0.74263					85	27	5	0	0	0	0.60556	1	23875	23875		20.454	0	1	136410000	+		14285	22917	10392	10469	13910	13910					-0.054674233069363254
FGEDCDYTV	9	Unmodified	_FGEDCDYTV_					0	0	0			REV__CON__Q28085	REV__CON__Q28085	MSMS	A375_MHC_IP_R2	2	524.7077026367188	2	524.70004	1047.38553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.521	1	90.253	89.753	90.753	0.7318								0	0	0	0.15486	1	34065	34065		12.532	4.6214	1		+	+	14286	15874	10393	10470	13911	13911					-0.13627044967074653
FGEECTYSL	9	Unmodified	_FGEECTYSL_					0	0	0			REV__CON__Q28085	REV__CON__Q28085	MSMS	A375_MHC_IP_R1	1	524.707763671875	2	524.718233	1047.42191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.43	1	104.43	103.93	104.93	0								0	0	0	0.1521	1	38344	38344		18.135	1.1927	1		+	+	14287	15874	10394	10471	13912	13912					-0.09990168070362415
FGEFCDCTY	9	Unmodified	_FGEFCDCTY_					0	0	0			REV__ENSG00000119681|ENST00000261978|LTBP2	REV__ENSG00000119681|ENST00000261978|LTBP2	MSMS	A375_MHC_IP_R2	2	542.6943969726562	2	542.691161	1083.36777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.718	1	45.487	44.987	45.987	0.7691								0	0	0	0.15486	1	16698	16698		4.756	0	1		+		14288	18082	10395	10472	13913	13913					-0.17058083493589038
FGEPDETEGL	10	Unmodified	_FGEPDETEGL_					0	0	0			REV__ENST00000504424.1_1_5:141391881-141392330:-|nuORF	REV__ENST00000504424.1_1_5:141391881-141392330:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	547.7234497070312	2	547.237844	1092.46113	-0.29465	-0.00016124	0.91453	0.00050046	0.61988	0.00033922	547.2383068354706	107.59	0.40828	107.59	107.44	107.85	0					9	7	2	0	0	0	0.71118	1	39528	39528		7.2892	1.0834	1	857730	+		14289	25522	10396	10473	13914	13914					-0.08139744515119673
FGFDCLKV	8	Unmodified	_FGFDCLKV_					0	0	0			REV__PRKD3|p.A789Mfs*21|1|0.16|ENSG00000115825|chr2:37256710-37256711|-/AT|frameshift_variant;REV__nc|ENSG00000138769|Q92772|CDKL2;REV__ENSG00000184304|ENST00000331968|PRKD1	REV__ENSG00000184304|ENST00000331968|PRKD1	MSMS	A375_MHC_IP_R1	1	464.690185546875	2	464.733489	927.452425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.617	1	35.617	35.117	36.117	0								0	0	0	0.16876	1	11859	11859		13.508	2.3934	1		+		14290	21806;19120;17915	10397	10474	13915	13915					-0.014203448946545905
FGFEDYYFEPQ	11	Unmodified	_FGFEDYYFEPQ_					0	0	0			REV__nc|ENSG00000100359|Q96HU1-2|SGSM3	REV__nc|ENSG00000100359|Q96HU1-2|SGSM3	MULTI-MSMS	A375_MHC_IP_R1	1	481.6040954589844	3	481.203076	1440.5874	-0.29194	-0.00014048	1.3209	0.00063561	1.0289	0.00049513	481.20370301969143	62.908	0.66752	62.908	62.505	63.173	0					18	12	2	0	0	0	0.73795	1	22773	22773		1.3296	0.11481	1	1241900	+		14291	17083	10398	10475	13916	13916					-0.11527238009853136
FGFEITHEV	9	Unmodified	_FGFEITHEV_					0	0	0		ENST00000486019.1_1_22:39175456-39190144:-|nuORF;ENSG00000100246|ENST00000216068|DNAL4	ENST00000486019.1_1_22:39175456-39190144:-|nuORF	ENST00000486019.1_1_22:39175456-39190144:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	539.6459350585938	2	539.763832	1077.51311	-0.81122	-0.00043787	0.97735	0.00052754	0.16613	8.9669E-05	539.7645012626245	84.157	0.30399	84.157	83.937	84.241	0					6	5	2	0	0	0	0.2002	1	30831	30831		37.974	5.6685	1	1423200			14292	2146	10399	10476	13917	13917					-0.022545363107155936
FGFGKNFI	8	Unmodified	_FGFGKNFI_					0	0	0			REV__ENST00000472137.5_1_10:76970916-76977714:+|nuORF	REV__ENST00000472137.5_1_10:76970916-76977714:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	465.6476135253906	2	465.247621	928.480688	-0.051118	-2.3783E-05	0.13521	6.2906E-05	0.084091	3.9123E-05	465.2476162480876	106.38	0.87035	106.38	106.16	107.03	0					22	16	2	0	0	0	0.7479	1	39070	39070		20.871	20.871	1	2045600	+		14293	20603	10400	10477	13918	13918					0.013587210769401281
FGFGKNFI	8	Unmodified	_FGFGKNFI_					0	0	0			REV__ENST00000472137.5_1_10:76970916-76977714:+|nuORF	REV__ENST00000472137.5_1_10:76970916-76977714:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	465.6474914550781	2	465.247621	928.480688	-0.61595	-0.00028657	0.33278	0.00015482	-0.28317	-0.00013174	465.2477308377761	105.41	0.81433	106.17	105.82	106.63	0.76308					21	15	2	0	0	0	0.77123	1	39884	39884		14.582	3.4672	1	1303200	+		14294	20603	10400	10477	13919	13919					0.013587210769401281
FGFGKNFI	8	Unmodified	_FGFGKNFI_					0	0	0			REV__ENST00000472137.5_1_10:76970916-76977714:+|nuORF	REV__ENST00000472137.5_1_10:76970916-76977714:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	465.247621	928.480688	-0.61595	-0.00028657	0.33278	0.00015482	-0.28317	-0.00013174	465.2477308377761	105.41	0.81433	106.17	105.82	106.63	0.76308	-0.10535	7.2176E-05	NaN	20.871	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1303200	+		14295	20603	10400	10477							0.013587210769401281
FGFGSAVP	8	Unmodified	_FGFGSAVP_					0	0	0			REV__HTRA1|p.S205F|1|0.57|ENSG00000166033|chr10:122489463-122489463|C/T|missense_variant	REV__HTRA1|p.S205F|1|0.57|ENSG00000166033|chr10:122489463-122489463|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	391.1329650878906	2	391.197596	780.38064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.86	1	106.62	106.12	107.12	0.75977								0	0	0	0.16876	1	40026	40026		5.2307	2.3415	1		+		14296	26767	10401	10478	13920	13920					-0.018335162568632768
FGFHKPKMY	9	Unmodified	_FGFHKPKMY_					0	0	0		ENSG00000139146|ENST00000337682|SINHCAF	ENSG00000139146|ENST00000337682|SINHCAF	ENSG00000139146|ENST00000337682|SINHCAF	MULTI-MSMS	A375_MHC_IP_R1	1	385.93212890625	3	385.532034	1153.57427	0.38776	0.00014949	-0.2522	-9.7231E-05	0.13556	5.2263E-05	385.53193676587296	37.487	1.1218	37.487	36.945	38.067	0					42	21	3	0	0	0	0.28079	1	12644	12644		32.037	32.037	1	11192000			14297	5051	10402	10479	13921	13921					0.003626971877338292
FGFHKPKMY	9	Unmodified	_FGFHKPKMY_					0	0	0		ENSG00000139146|ENST00000337682|SINHCAF	ENSG00000139146|ENST00000337682|SINHCAF	ENSG00000139146|ENST00000337682|SINHCAF	MULTI-SECPEP	A375_MHC_IP_R1	1	577.1805419921875	2	577.794412	1153.57427	-0.051124	-2.9539E-05	-1.0926	-0.00063128	-1.1437	-0.00066082	578.2949404270325	37.56	0.40956	37.56	37.351	37.761	0					13	7	2	0	0	0	0.61452	1	12653	12653		10.824	2.9138	1	1151900			14298	5051	10402	10479	13922	13922					0.003626971877338292
FGFHKPKMY	9	Unmodified	_FGFHKPKMY_					0	0	0		ENSG00000139146|ENST00000337682|SINHCAF	ENSG00000139146|ENST00000337682|SINHCAF	ENSG00000139146|ENST00000337682|SINHCAF	MULTI-MSMS	A375_MHC_IP_R2	2	385.9320068359375	3	385.532034	1153.57427	-0.45117	-0.00017394	0.19583	7.5499E-05	-0.25534	-9.844E-05	385.5321316644505	36.491	1.118	37.261	36.749	37.867	0.7709					47	21	4	0	0	0	0.28079	1	13281	13281		32.037	32.037	1	20571000			14299	5051	10402	10479	13923	13923					0.003626971877338292
FGFHKPKMY	9	Oxidation (M)	_FGFHKPKM(Oxidation (M))Y_		FGFHKPKM(1)Y		FGFHKPKM(40)Y	0	0	1		ENSG00000139146|ENST00000337682|SINHCAF	ENSG00000139146|ENST00000337682|SINHCAF	ENSG00000139146|ENST00000337682|SINHCAF	MULTI-SECPEP	A375_MHC_IP_R1	1	391.2634582519531	3	390.863672	1169.56919	-0.15734	-6.1497E-05	-1.9451	-0.00076027	-2.1024	-0.00082176	390.86359886590196	26.14	1.5148	26.14	25.765	27.28	0					82	29	5	0	0	0	0.43207	1	7705	7705		40.239	21.866	1	17762000			14300	5051	10402	10480	13924	13924		268			-0.008816066748977391
FGFLKHSES	9	Unmodified	_FGFLKHSES_					0	0	0			REV__nc|ENSG00000145414|Q96HR8-2|NAF1	REV__nc|ENSG00000145414|Q96HR8-2|NAF1	MULTI-MSMS	A375_MHC_IP_R1	1	526.6773681640625	2	526.263999	1050.51345	-0.47239	-0.0002486	-0.22589	-0.00011888	-0.69828	-0.00036748	526.2638721983818	73.238	0.91294	73.238	72.93	73.843	0					55	17	4	0	0	0	0.13797	2	26661	26618;26661		43.858	11.073	1	24325000	+		14301	27275	10403	10481	13925;13926	13926					-0.0097911659086094
FGFLKHSES	9	Unmodified	_FGFLKHSES_					0	0	0			REV__nc|ENSG00000145414|Q96HR8-2|NAF1	REV__nc|ENSG00000145414|Q96HR8-2|NAF1	MULTI-SECPEP	A375_MHC_IP_R1	1	526.1765747070312	2	526.263999	1050.51345	-0.47239	-0.0002486	-0.22589	-0.00011888	-0.69828	-0.00036748	526.2638721983818	73.238	0.91294	73.238	72.93	73.843	0					55	17	4	0	0	0	0.46045	1	26608	26608		36.127	3.8215	1	24325000	+		14302	27275	10403	10481	13927	13927					-0.0097911659086094
FGFLKHSES	9	Unmodified	_FGFLKHSES_					0	0	0			REV__nc|ENSG00000145414|Q96HR8-2|NAF1	REV__nc|ENSG00000145414|Q96HR8-2|NAF1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	526.263999	1050.51345	-0.60137	-0.00031648	-0.32165	-0.00016927	-0.92302	-0.00048575	526.2638721924519	72.447	0.76077	73.183	72.872	73.633	0.7354	-0.027755	-4.3378E-05	NaN	43.858	43	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26288000	+		14303	27275	10403	10481							-0.0097911659086094
FGFLVDKV	8	Unmodified	_FGFLVDKV_					0	0	0			REV__SERPINB5|p.P67L|1|0.14|ENSG00000206075|chr18:63486977-63486977|C/T|missense_variant	REV__SERPINB5|p.P67L|1|0.14|ENSG00000206075|chr18:63486977-63486977|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	462.6690368652344	2	462.763104	923.511654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.214	1	58.214	57.714	58.714	0								0	0	0	0.16876	1	20907	20907		11.114	1.767	1		+		14304	27942	10404	10482	13928	13928					0.04683874391173504
FGFSWFWFRLY	11	Unmodified	_FGFSWFWFRLY_					0	0	0		nc|ENSG00000223802|P27544-2|CERS1;ENSG00000223802|ENST00000623882|CERS1	nc|ENSG00000223802|P27544-2|CERS1	nc|ENSG00000223802|P27544-2|CERS1	MULTI-SECPEP	A375_MHC_IP_R1	1	389.6159973144531	4	389.693487	1554.74484	0.2089	8.1408E-05	-0.39433	-0.00015367	-0.18542	-7.2258E-05	389.69308974173697	20.143	0.45653	20.143	19.877	20.334	0					13	8	3	0	0	0	1.001	1	5092	5092		0.094841	0	1	890980			14305	9689	10405	10483	13929	13929					-0.010340688891574246
FGFVDGLFPT	10	Unmodified	_FGFVDGLFPT_					0	0	0			REV__ENST00000420743.6_1_14:21702260-21731833:-|nuORF	REV__ENST00000420743.6_1_14:21702260-21731833:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	550.71533203125	2	550.276575	1098.5386	-0.72557	-0.00039926	-3.9744	-0.002187	-4.6999	-0.0025863	550.2749837437276	63.407	0.66116	64.147	63.987	64.648	0.74022					20	12	3	0	0	0	0.69306	1	24112	24112		13.906	2.2658	1	871340	+		14306	24573	10406	10484	13930	13930					-0.0067306178827948315
FGFYKGILPPI	11	Unmodified	_FGFYKGILPPI_					0	0	0		nc|ENSG00000183032|Q9BQT8-2|SLC25A21;ENSG00000183032|ENST00000331299|SLC25A21	nc|ENSG00000183032|Q9BQT8-2|SLC25A21	nc|ENSG00000183032|Q9BQT8-2|SLC25A21	MULTI-MSMS	A375_MHC_IP_R2	2	627.260009765625	2	626.360442	1250.70633	-0.80657	-0.0005052	-0.054573	-3.4183E-05	-0.86114	-0.00053938	626.3611599436084	130.77	1.1203	130.99	130.75	131.87	0.2142					65	21	4	0	0	0	0.73557	1	51565	51565		3.5965	0.60125	1	37623000			14307	8457	10407	10485	13931	13931					0.09100625476344248
FGGEHNPPSI	10	Unmodified	_FGGEHNPPSI_					0	0	0		ENST00000469930.1_1_7:140534396-140624503:-|nuORF;ENSG00000157764|ENST00000646891|BRAF	ENST00000469930.1_1_7:140534396-140624503:-|nuORF	ENST00000469930.1_1_7:140534396-140624503:-|nuORF	MSMS	A375_MHC_IP_R2	2	527.6486206054688	2	527.751256	1053.48796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.394	1	95.138	94.638	95.638	0.74474								0	0	0	0.15158	1	35873	35873		14.838	0	1				14308	6264	10408	10486	13932	13932					-0.03664591113283677
FGGEWWTV	8	Unmodified	_FGGEWWTV_					0	0	0		ENST00000322177.5_1_15:75247948-75248191:-|nuORF	ENST00000322177.5_1_15:75247948-75248191:-|nuORF	ENST00000322177.5_1_15:75247948-75248191:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	491.6787414550781	2	491.226885	980.439217	-0.26121	-0.00012831	1.136	0.00055805	0.87483	0.00042974	491.2276865959413	102.11	0.5067	102.11	101.85	102.35	0					14	9	2	0	0	0	0.972	1	37592	37592		6.3541	0	1	877480			14309	10701	10409	10487	13933	13933					-0.05178459682394987
FGGGGGGAGA	10	Unmodified	_FGGGGGGAGA_					0	0	0			REV__nc|ENSG00000115935|O43516-4|WIPF1	REV__nc|ENSG00000115935|O43516-4|WIPF1	MULTI-SECPEP	A375_MHC_IP_R2	2	707.6543579101562	1	707.310729	706.303452	-0.54024	-0.00038212	1.4649	0.0010361	0.92464	0.00065401	707.3115745119915	144.32	0.19606	144.35	144.17	144.37	0.024414					5	3	2	0	0	0	0.94819	1	56346	56346		1.8442	1.0506	1	672560	+		14310	17924	10410	10488	13934	13934					-0.061447344731959674
FGGHIRSV	8	Unmodified	_FGGHIRSV_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MULTI-SECPEP	A375_MHC_IP_R1	1	437.140380859375	2	436.740494	871.466435	-0.049826	-2.1761E-05	0.29908	0.00013062	0.24925	0.00010886	436.7405936748666	47.693	0.25144	47.693	47.467	47.718	0					8	4	2	0	0	0	0.37815	1	16773	16773		53.833	17.706	1	6176200			14311	2429	10411	10489	13935	13935					0.02556068648652854
FGGHIRSV	8	Unmodified	_FGGHIRSV_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MULTI-MSMS	A375_MHC_IP_R2	2	437.1402893066406	2	436.740494	871.466435	-0.13563	-5.9234E-05	-0.32457	-0.00014175	-0.4602	-0.00020099	436.740359828018	46.619	0.7112	47.384	46.855	47.567	0.76519					24	13	3	0	0	0	0.11362	2	17456	17443;17456		92.491	31.134	1	7974100			14312	2429	10411	10489	13936;13937	13937					0.02556068648652854
FGGINTLEEN	10	Unmodified	_FGGINTLEEN_					0	0	0		ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	MSMS	A375_MHC_IP_R1	1	547.1969604492188	2	547.261653	1092.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.481	1	66.481	65.981	66.981	0								0	0	0	0.15038	1	24075	24075		17.113	2.2746	1				14313	9445	10412	10490	13938	13938					-0.03380045524272646
FGGLTRAL	8	Unmodified	_FGGLTRAL_					0	0	0		REXO4|p.A245S|1|0.25|ENSG00000148300|chr9:133412476-133412476|C/A|missense_variant;ENST00000559109.2_1_15:31745531-31745762:-|nuORF;ENSG00000148300|ENST00000371942|REXO4	REXO4|p.A245S|1|0.25|ENSG00000148300|chr9:133412476-133412476|C/A|missense_variant	REXO4|p.A245S|1|0.25|ENSG00000148300|chr9:133412476-133412476|C/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	418.1448059082031	2	417.745245	833.475937	-0.4403	-0.00018393	-0.1924	-8.0374E-05	-0.6327	-0.00026431	417.7452080101669	57.181	0.45963	57.931	57.712	58.172	0.75014					17	8	3	0	0	0	0.26691	1	21610	21610		58.679	18.721	1	3767800			14314	5728	10413	10491	13939	13939					0.052538369341732505
FGGPDGGDGG	10	Unmodified	_FGGPDGGDGG_					0	0	0		ENST00000466099.1_1_20:60768659-60775121:+|nuORF;ENSG00000101181|ENST00000370823|MTG2;tr|U7SL66|U7SL66_FUSNUGTPaseObgOS=FusobacteriumnucleatumCTI-5OX=1316586GN=obgPE=3SV=1	ENST00000466099.1_1_20:60768659-60775121:+|nuORF	ENST00000466099.1_1_20:60768659-60775121:+|nuORF	MSMS	A375_MHC_IP_R1	1	418.145263671875	2	418.164482	834.314411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.18	1	58.18	57.68	58.68	0								0	0	0	0.15508	1	20895	20895		4.3292	1.44	1				14315	2262	10414	10492	13940	13940					-0.10937376889546613
FGGTRQIL	8	Unmodified	_FGGTRQIL_					0	0	0			REV__ADGRV1|p.R5246Q|2|0.38|ENSG00000164199|chr5:90810997-90810997|G/A|missense_variant	REV__ADGRV1|p.R5246Q|2|0.38|ENSG00000164199|chr5:90810997-90810997|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	446.65582275390625	2	446.255977	890.497401	-0.023909	-1.0669E-05	0.19916	8.8879E-05	0.17526	7.8209E-05	446.25587038175405	55.661	0.56023	55.661	55.381	55.941	0					15	10	3	0	0	0	0.73111	1	19924	19924		25.399	2.2509	1	3648100	+		14316	15334	10415	10493	13941	13941					0.04777221962899603
FGHCLPSSYQG	11	Unmodified	_FGHCLPSSYQG_					0	0	0		ENSG00000188694|ENST00000340345|KRTAP24-1	ENSG00000188694|ENST00000340345|KRTAP24-1	ENSG00000188694|ENST00000340345|KRTAP24-1	MULTI-MSMS	A375_MHC_IP_R1	1	599.2119750976562	2	598.263673	1194.51279	-0.27163	-0.00016251	2.8347	0.0016959	2.563	0.0015334	598.2653579337637	42.652	1.1643	42.652	41.828	42.993	0					63	22	3	0	0	0	0.67989	1	14697	14697		17.113	1.2657	1	12379000			14317	8925	10416	10494	13942	13942					-0.07668279302220071
FGHFFCNVFI	10	Unmodified	_FGHFFCNVFI_					0	0	0		nc|ENSG00000148680|P34969-3|HTR7;nc|ENSG00000148680|P34969-2|HTR7;ENSG00000148680|ENST00000336152|HTR7	nc|ENSG00000148680|P34969-3|HTR7	nc|ENSG00000148680|P34969-3|HTR7	MULTI-MSMS	A375_MHC_IP_R1	1	410.5926818847656	3	410.863672	1229.56919	0.060188	2.4729E-05	1.2276	0.00050437	1.2878	0.0005291	410.86413345876497	60.436	0.45831	60.436	60.159	60.618	0					17	8	3	0	0	0	0.6806	1	21774	21774		8.9762	3.1928	1	1864600			14318	5756	10417	10495	13943	13943					-0.036416066748870435
FGIDPDDTTI	10	Unmodified	_FGIDPDDTTI_					0	0	0		nc|ENSG00000162174|Q7L266-2|ASRGL1;ENSG00000162174|ENST00000415229|ASRGL1	nc|ENSG00000162174|Q7L266-2|ASRGL1	nc|ENSG00000162174|Q7L266-2|ASRGL1	MULTI-SECPEP	A375_MHC_IP_R2	2	547.6561889648438	2	547.256037	1092.49752	-0.95041	-0.00052012	1.2772	0.00069898	0.32683	0.00017886	547.2566463170377	55.901	0.40875	56.652	56.438	56.847	0.75015					11	7	2	0	0	0	0.57563	1	21159	21159		32.305	2.4649	1	2015800			14319	6511	10418	10496	13944	13944					-0.04502867618430173
FGIGVVECMA	10	Unmodified	_FGIGVVECMA_					0	0	0		ENSG00000253710|ENST00000521508|ALG11;ALG11|p.A410V|1|0.09|ENSG00000253710|chr13:52028340-52028340|C/T|missense_variant	ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	MULTI-MSMS	A375_MHC_IP_R2	2	513.1873779296875	2	513.243363	1024.47217	-0.71406	-0.00036649	-1.084	-0.00055637	-1.7981	-0.00092286	513.2432123175223	45.974	0.45474	46.739	46.503	46.957	0.76519					18	8	3	0	0	0	0.70329	1	17263	17263		10.824	1.4408	1	3169400			14320	9864	10419	10497	13945	13945					-0.03908336946210511
FGKEQILRQ	9	Unmodified	_FGKEQILRQ_					0	0	0			REV__ENSG00000168038|ENST00000301831|ULK4	REV__ENSG00000168038|ENST00000301831|ULK4	MULTI-SECPEP	A375_MHC_IP_R2	2	560.218994140625	2	559.819473	1117.62439	-0.90804	-0.00050834	0.91314	0.00051119	0.0050978	2.8539E-06	559.8192932661447	51.616	0.91447	52.368	52.068	52.983	0.75225					35	17	4	0	0	0	0.4261	1	19420	19420		37.974	13.953	1	20047000	+		14321	20822	10420	10498	13946	13946					0.07028523117219265
FGKGYFLEI	9	Unmodified	_FGKGYFLEI_					0	0	0		ENSG00000154265|ENST00000392676|ABCA5;ENST00000588106.1_1_17:67246040-67246830:-|nuORF;nc|ENSG00000154265|Q8WWZ7-3|ABCA5	ENSG00000154265|ENST00000392676|ABCA5	ENSG00000154265|ENST00000392676|ABCA5	MULTI-MSMS	A375_MHC_IP_R1	1	537.6864013671875	2	537.286943	1072.55933	-0.6304	-0.00033871	-0.06488	-3.4859E-05	-0.69528	-0.00037357	537.2867901640662	101.53	0.86038	101.53	101.14	102	0					35	16	3	0	0	0	0.16286	1	37278	37278		51.63	13.656	1	4777400			14322	6078	10421	10499	13947	13947					0.0259552859138239
FGKGYFLEI	9	Unmodified	_FGKGYFLEI_					0	0	0		ENSG00000154265|ENST00000392676|ABCA5;ENST00000588106.1_1_17:67246040-67246830:-|nuORF;nc|ENSG00000154265|Q8WWZ7-3|ABCA5	ENSG00000154265|ENST00000392676|ABCA5	ENSG00000154265|ENST00000392676|ABCA5	MULTI-SECPEP	A375_MHC_IP_R2	2	537.6864624023438	2	537.286943	1072.55933	-0.69893	-0.00037552	0.18778	0.00010089	-0.51114	-0.00027463	537.2869056808779	100.64	0.56509	101.4	101.13	101.7	0.76278					25	10	3	0	0	0	0.087712	1	38127	38127		57.722	13.864	1	5589400			14323	6078	10421	10499	13948	13948					0.0259552859138239
FGKPDRVP	8	Unmodified	_FGKPDRVP_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	A375_MHC_IP_R2	2	458.6558532714844	2	458.255977	914.497401	-0.28456	-0.0001304	-0.1948	-8.9267E-05	-0.47936	-0.00021967	458.2558971794255	27.502	0.5572	28.181	27.945	28.502	0.67857					26	10	3	0	0	0	0.57209	1	9407	9407		46.021	9.9768	1	10177000	+		14324	21249	10422	10500	13949	13949					0.036732219628902385
FGKPDRVP	8	Unmodified	_FGKPDRVP_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	458.255977	914.497401	-0.35425	-0.00016234	0.1329	6.0904E-05	-0.22135	-0.00010144	458.2559092391442	28.209	0.65452	28.209	27.887	28.541	0	0.014136	0.00016697	NaN	46.021	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9135500	+		14325	21249	10422	10500							0.036732219628902385
FGKQLRYSL	9	Unmodified	_FGKQLRYSL_					0	0	0			REV__ENSG00000178217|ENST00000646907|SH2D4B	REV__ENSG00000178217|ENST00000646907|SH2D4B	MULTI-MSMS	A375_MHC_IP_R2	2	371.2562561035156	3	371.213469	1110.61858	0.37276	0.00013837	-0.43934	-0.00016309	-0.066586	-2.4718E-05	371.2133616822148	31.077	0.25414	31.796	31.669	31.923	0.71857					12	4	3	0	0	0	0.72761	1	10931	10931		4.5289	1.2092	1	3298700	+		14326	21495	10423	10501	13950	13950					0.0676942460556802
FGKRGIFYF	9	Unmodified	_FGKRGIFYF_					0	0	0		ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1	ENST00000504745.1_1_4:113347516-113362363:+|nuORF	ENST00000504745.1_1_4:113347516-113362363:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	378.3083190917969	3	378.874677	1133.6022	-0.021771	-8.2484E-06	-2.1013	-0.00079612	-2.123	-0.00080436	379.20755932004596	41.586	0.45989	41.586	41.317	41.777	0					10	8	2	0	0	0	0.75466	1	14430	14430		4.897	0	1	1594000			14327	1560	10424	10502	13951	13951					0.04074343439447148
FGKTRVSPIF	10	Unmodified	_FGKTRVSPIF_					0	0	0		nc|ENSG00000205861|Q58A44|PCOTH	nc|ENSG00000205861|Q58A44|PCOTH	nc|ENSG00000205861|Q58A44|PCOTH	MSMS	A375_MHC_IP_R1	1	576.2427368164062	2	576.332216	1150.64988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.95	1	126.95	126.45	127.45	0								0	0	0	0.15435	1	48560	48560		6.7232	0	1				14328	14868	10425	10503	13952	13952					0.08057997639639325
FGLARIYSF	9	Unmodified	_FGLARIYSF_					0	0	0		ENST00000473078.1_1_7:92300738-92355023:-|nuORF;ENSG00000105810|ENST00000424848|CDK6	ENST00000473078.1_1_7:92300738-92355023:-|nuORF	ENST00000473078.1_1_7:92300738-92355023:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	537.7212524414062	2	537.292559	1072.57057	-0.65115	-0.00034986	0.56751	0.00030492	-0.083642	-4.494E-05	537.2926985239076	102.99	0.66154	102.99	102.71	103.37	0					14	12	2	0	0	0	0.26169	1	37793	37793		33.445	13.03	1	1674400			14329	2639	10426	10504	13953	13953					0.0371835068551718
FGLARIYSF	9	Unmodified	_FGLARIYSF_					0	0	0		ENST00000473078.1_1_7:92300738-92355023:-|nuORF;ENSG00000105810|ENST00000424848|CDK6	ENST00000473078.1_1_7:92300738-92355023:-|nuORF	ENST00000473078.1_1_7:92300738-92355023:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	537.6917724609375	2	537.292559	1072.57057	-0.84564	-0.00045436	-0.039958	-2.1469E-05	-0.8856	-0.00047583	537.2922859122763	102.11	0.5571	102.88	102.62	103.18	0.76428					14	10	2	0	0	0	0.25548	1	38696	38696		53.404	32.95	1	1674600			14330	2639	10426	10504	13954	13954					0.0371835068551718
FGLARIYSY	9	Unmodified	_FGLARIYSY_					0	0	0		ENSG00000135446|ENST00000257904|CDK4;nc|ENSG00000135446|P11802-2|CDK4;ENST00000551706.1_1_12:58144639-58145133:-|nuORF	ENSG00000135446|ENST00000257904|CDK4	ENSG00000135446|ENST00000257904|CDK4	MULTI-MSMS	A375_MHC_IP_R1	1	545.6904296875	2	545.290017	1088.56548	-0.53849	-0.00029363	0.71885	0.00039198	0.18035	9.8346E-05	545.2903909228239	83.237	1.4182	83.237	82.823	84.241	0					65	27	4	0	0	0	0.0090297	1	30441	30441		99.755	41.076	1	34868000			14331	4684	10427	10505	13955	13955					0.024740468228856116
FGLARIYSY	9	Unmodified	_FGLARIYSY_					0	0	0		ENSG00000135446|ENST00000257904|CDK4;nc|ENSG00000135446|P11802-2|CDK4;ENST00000551706.1_1_12:58144639-58145133:-|nuORF	ENSG00000135446|ENST00000257904|CDK4	ENSG00000135446|ENST00000257904|CDK4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	545.290017	1088.56548	-0.82336	-0.00044897	0.7709	0.00042037	-0.052453	-2.8602E-05	545.2903842582183	82.475	1.3678	83.218	82.787	84.155	0.74293	-0.0095951	3.6707E-05	NaN	99.755	58	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23994000			14332	4684	10427	10505							0.024740468228856116
FGLHARMPPLV	11	Unmodified	_FGLHARMPPLV_					0	0	0		PHF1|p.P338L|1|0.71|ENSG00000112511|chr6:33414793-33414793|C/T|missense_variant	PHF1|p.P338L|1|0.71|ENSG00000112511|chr6:33414793-33414793|C/T|missense_variant	PHF1|p.P338L|1|0.71|ENSG00000112511|chr6:33414793-33414793|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	413.65032958984375	3	413.233988	1236.68013	-0.27411	-0.00011327	2.2255	0.00091966	1.9514	0.00080639	413.56931599301566	38.828	0.25645	39.603	39.401	39.658	0.77451					6	4	2	0	0	0	0.72851	1	14334	14334		10.315	1.8709	1	1252300			14333	15165	10428	10506	13956	13956					0.07126033033182466
FGLLPPQLS	9	Unmodified	_FGLLPPQLS_					0	0	0			REV__ENST00000533877.1_1_7:6381544-6388389:-|nuORF	REV__ENST00000533877.1_1_7:6381544-6388389:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	486.68121337890625	2	486.28166	970.548768	-0.6722	-0.00032688	-0.077958	-3.791E-05	-0.75015	-0.00036479	486.2815713183532	80.75	1.0686	81.494	81.062	82.13	0.74474					31	20	2	0	0	0	0.11629	1	30640	30640		47.749	1.7277	1	11577000	+		14334	25884	10429	10507	13957	13957					0.06231545936952898
FGLLRELHHTS	11	Unmodified	_FGLLRELHHTS_					0	0	0		ENST00000369478.3_1_1:117311417-117311705:+|nuORF	ENST00000369478.3_1_1:117311417-117311705:+|nuORF	ENST00000369478.3_1_1:117311417-117311705:+|nuORF	MSMS	A375_MHC_IP_R1	1	655.2686767578125	2	655.354211	1308.69387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.37	1	103.37	102.87	103.87	0								0	0	0	0.16191	1	37973	37973		8.7454	2.0222	1				14335	11131	10430	10508	13958	13958					0.05186982065970369
FGLPLPQLS	9	Unmodified	_FGLPLPQLS_					0	0	0			REV__ENST00000564893.1_1_16:27692577-27730085:-|nuORF	REV__ENST00000564893.1_1_16:27692577-27730085:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	486.6815185546875	2	486.28166	970.548768	-0.18023	-8.7641E-05	-0.01017	-4.9454E-06	-0.1904	-9.2586E-05	486.2816296978864	81.732	0.86021	81.732	81.353	82.214	0					28	16	2	0	0	0	0.047602	1	29854	29854		65.235	2.6623	1	12694000	+		14336	26222	10431	10509	13959	13959					0.06231545936952898
FGLPLPQLS	9	Unmodified	_FGLPLPQLS_					0	0	0			REV__ENST00000564893.1_1_16:27692577-27730085:-|nuORF	REV__ENST00000564893.1_1_16:27692577-27730085:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	486.28166	970.548768	-0.18023	-8.7641E-05	-0.01017	-4.9454E-06	-0.1904	-9.2586E-05	486.2816296978864	81.732	0.86021	81.732	81.353	82.214	0	0.11889	2.8544E-05	NaN	65.235	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12694000	+		14337	26222	10431	10509							0.06231545936952898
FGLPLPQLS	9	Unmodified	_FGLPLPQLS_					0	0	0			REV__ENST00000564893.1_1_16:27692577-27730085:-|nuORF	REV__ENST00000564893.1_1_16:27692577-27730085:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	486.28166	970.548768	-0.6722	-0.00032688	-0.077958	-3.791E-05	-0.75015	-0.00036479	486.2815713183532	80.75	1.0686	81.494	81.062	82.13	0.74474	-0.11889	-3.7384E-05	NaN	65.235	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11577000	+		14338	26222	10431	10509							0.06231545936952898
FGLRKKKSP	9	Unmodified	_FGLRKKKSP_					0	0	0			REV__ENST00000493328.5_1_1:35452707-35454621:-|nuORF	REV__ENST00000493328.5_1_1:35452707-35454621:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	531.1438598632812	2	530.834926	1059.6553	-0.65579	-0.00034812	0.69233	0.00036752	0.036546	1.94E-05	530.8350527505213	76.423	0.50484	76.423	76.117	76.622	0					12	9	2	0	0	0	0.67483	1	27814	27814		10.074	2.7847	1	1808400	+		14339	25422	10432	10510	13960	13960					0.12785721222144275
FGLSRDKEEI	10	Unmodified	_FGLSRDKEEI_					0	0	0			REV__TRIP11|p.S857F|1|0.45|ENSG00000100815|chr14:92005406-92005406|G/A|missense_variant	REV__TRIP11|p.S857F|1|0.45|ENSG00000100815|chr14:92005406-92005406|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	398.6361083984375	3	398.543544	1192.6088	-0.44052	-0.00017557	0.066312	2.6428E-05	-0.37421	-0.00014914	398.5432419487973	23.858	0.71054	23.858	23.687	24.397	0					20	13	3	0	0	0	0.42334	1	6655	6655		20.871	0.2902	1	4802900	+		14340	28907	10433	10511	13961	13961					0.02020191809538119
FGLSRDKEEI	10	Unmodified	_FGLSRDKEEI_					0	0	0			REV__TRIP11|p.S857F|1|0.45|ENSG00000100815|chr14:92005406-92005406|G/A|missense_variant	REV__TRIP11|p.S857F|1|0.45|ENSG00000100815|chr14:92005406-92005406|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	398.543544	1192.6088	-0.40967	-0.00016327	0.26342	0.00010498	-0.14625	-5.8288E-05	398.5435281054939	23.149	0.50881	23.779	23.42	23.928	0.63014	-0.039779	7.7985E-05	NaN	20.871	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2769500	+		14341	28907	10433	10511							0.02020191809538119
FGLVPVLE	8	Unmodified	_FGLVPVLE_					0	0	0		nc|ENSG00000148834|P78417-2|GSTO1;nc|ENSG00000148834|P78417-3|GSTO1;ENSG00000148834|ENST00000369713|GSTO1	nc|ENSG00000148834|P78417-2|GSTO1	nc|ENSG00000148834|P78417-2|GSTO1	MSMS	A375_MHC_IP_R1	1	437.1567077636719	2	437.257654	872.500755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.68	1	109.68	109.18	110.18	0								0	0	0	0.16876	1	40224	40224		2.8892	0	1				14342	5766	10434	10512	13962	13962					0.059404720169027314
FGNLAKMYGKY	11	Unmodified	_FGNLAKMYGKY_					0	0	0			REV__ENSG00000008311|ENST00000417368|AASS	REV__ENSG00000008311|ENST00000417368|AASS	MULTI-MSMS	A375_MHC_IP_R2	2	431.28729248046875	3	431.221636	1290.64308	-0.51509	-0.00022212	-2.5445	-0.0010972	-3.0596	-0.0013193	431.2206731746433	19.433	0.55756	20.036	19.683	20.241	0.60308					17	10	2	0	0	0	0.73195	1	5941	5941		7.0371	1.1689	1	3176700	+		14343	16172	10435	10513	13963	13963					0.009383166967836587
FGPINQIIFSR	11	Unmodified	_FGPINQIIFSR_					0	0	0			REV__nc|ENSG00000235217|Q9H489|TSPY26P	REV__nc|ENSG00000235217|Q9H489|TSPY26P	MULTI-MSMS	A375_MHC_IP_R2	2	431.6430358886719	3	431.243429	1290.70846	-0.235	-0.00010134	-0.4793	-0.00020669	-0.7143	-0.00030804	431.2431155140849	75.672	0.46031	76.412	76.129	76.589	0.74052					19	8	3	0	0	0	0.73064	1	28734	28734		8.2864	2.0521	1	2222900	+		14344	25182	10436	10514	13964	13964					0.07473054214119657
FGPPIPKGV	9	Unmodified	_FGPPIPKGV_					0	0	0		ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1	ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1	ENSG00000116991|ENST00000674635|SIPA1L2	MULTI-MSMS	A375_MHC_IP_R1	1	456.6712951660156	2	456.271096	910.527639	-0.57933	-0.00026433	0.58713	0.00026789	0.0078071	3.5622E-06	456.2712637328641	67.439	0.91461	67.439	67.04	67.955	0					26	17	2	0	0	0	0.4867	1	24408	24408		20.454	4.6064	1	1376100			14345	3449;9169	10437	10515	13965	13965					0.06879580628094573
FGPPIPKGV	9	Unmodified	_FGPPIPKGV_					0	0	0		ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1	ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1	ENSG00000116991|ENST00000674635|SIPA1L2	MULTI-MSMS	A375_MHC_IP_R2	2	456.6708679199219	2	456.271096	910.527639	-0.34578	-0.00015777	0.34063	0.00015542	-0.0051475	-2.3487E-06	456.2712109107573	66.614	1.0187	67.351	66.932	67.951	0.73631					28	19	2	0	0	0	0.35581	1	25275	25275		26.884	11.036	1	1552200			14346	3449;9169	10437	10515	13966	13966					0.06879580628094573
FGPPVRNTV	9	Unmodified	_FGPPVRNTV_					0	0	0			REV__DMGDH|p.G328R|1|0.32|ENSG00000132837|chr5:79044316-79044316|C/T|missense_variant	REV__DMGDH|p.G328R|1|0.32|ENSG00000132837|chr5:79044316-79044316|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	493.6640930175781	2	493.774534	985.534515	-0.22838	-0.00011277	-0.39522	-0.00019515	-0.6236	-0.00030792	493.77425768648567	43.425	0.3557	43.425	43.197	43.553	0					9	6	2	0	0	0	0.71541	1	15050	15050		11.64	0	1	1822100	+		14347	15999	10438	10516	13967	13967					0.04116893508660269
FGPPVRNTV	9	Unmodified	_FGPPVRNTV_					0	0	0			REV__DMGDH|p.G328R|1|0.32|ENSG00000132837|chr5:79044316-79044316|C/T|missense_variant	REV__DMGDH|p.G328R|1|0.32|ENSG00000132837|chr5:79044316-79044316|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	493.774534	985.534515	-0.43111	-0.00021287	-2.5474	-0.0012579	-2.9785	-0.0014707	493.7742513962887	42.485	0.2538	43.257	43.116	43.369	0.7724	-0.084031	-0.0019798	NaN	11.64	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1004800	+		14348	15999	10438	10516							0.04116893508660269
FGQAEFCSMY	10	Unmodified	_FGQAEFCSMY_					0	0	0			REV__nc|ENSG00000173567|Q8IZF5-2|ADGRF3	REV__nc|ENSG00000173567|Q8IZF5-2|ADGRF3	MULTI-MSMS	A375_MHC_IP_R1	1	591.7129516601562	2	591.73336	1181.45217	-0.28196	-0.00016684	-1.6125	-0.00095416	-1.8944	-0.001121	591.7321974439184	101.34	0.35476	101.34	101.09	101.45	0					10	6	2	0	0	0	0.71118	1	37161	37161		7.2892	1.0834	1	898910	+		14349	21232	10439	10517	13968	13968					-0.13130132676815265
FGQDRILDDI	10	Unmodified	_FGQDRILDDI_					0	0	0			REV__ENST00000497784.1_2_7:140434399-140508041:-|nuORF	REV__ENST00000497784.1_2_7:140434399-140508041:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	597.0521240234375	2	596.303852	1190.59315	-0.36846	-0.00021971	-2.041	-0.0012171	-2.4095	-0.0014368	596.8060157662168	91.821	0.65692	91.821	91.503	92.16	0					19	12	3	0	0	0	0.88918	1	33746	33746		8.7454	8.3948	1	3260600	+		14350	20041	10440	10518	13969	13969					0.0054790529247839
FGQQFEEYF	9	Unmodified	_FGQQFEEYF_					0	0	0			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-SECPEP	A375_MHC_IP_R2	2	597.1334838867188	2	597.758746	1193.50294	-1.131	-0.00067606	-0.1132	-6.7668E-05	-1.2442	-0.00074373	598.2610340403439	53.239	0.81388	53.99	53.487	54.301	0.75105					18	15	2	0	0	0	0.74651	1	20028	20028		13.508	4.9146	1	2034900	+		14351	22015	10441	10519	13970	13970					-0.08607144035954661
FGQSPHHLK	9	Unmodified	_FGQSPHHLK_					0	0	0			REV__ENSG00000198785|ENST00000361820|GRIN3A	REV__ENSG00000198785|ENST00000361820|GRIN3A	MULTI-SECPEP	A375_MHC_IP_R2	2	526.4383544921875	2	525.777608	1049.54066	-0.87633	-0.00046075	-0.87862	-0.00046196	-1.755	-0.00092271	525.7772831361189	24.796	0.5066	25.439	25.263	25.77	0.64368					18	9	2	0	0	0	0.28216	1	8314	8314		49.933	7.8384	1	3823000	+		14352	22416	10442	10520	13971	13971					0.01787411740178868
FGQTLSFFF	9	Unmodified	_FGQTLSFFF_					0	0	0			REV__ENST00000481710.5_1_21:35774480-35774555:+|nuORF	REV__ENST00000481710.5_1_21:35774480-35774555:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6704711914062	2	547.271293	1092.52803	-0.56542	-0.00030944	0.035359	1.9351E-05	-0.53006	-0.00029009	547.271134698897	64.275	1.2673	64.275	63.939	65.206	0					33	24	2	0	0	0	0.24548	1	23251	23251		52.268	10.313	1	6401700	+		14353	25266	10443	10521	13972	13972					-0.014530444427236944
FGQTLSFFF	9	Unmodified	_FGQTLSFFF_					0	0	0			REV__ENST00000481710.5_1_21:35774480-35774555:+|nuORF	REV__ENST00000481710.5_1_21:35774480-35774555:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	547.271293	1092.52803	-0.73101	-0.00040006	-1.0256	-0.00056129	-1.7566	-0.00096134	547.2708006951452	63.471	0.61069	64.212	63.936	64.547	0.74022	-0.031747	-0.00018163	NaN	43.858	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5969900	+		14354	25266	10443	10521							-0.014530444427236944
FGRARWLPLL	10	Unmodified	_FGRARWLPLL_					0	0	0			REV__ENSG00000205978|ENST00000382554|NYNRIN	REV__ENSG00000205978|ENST00000382554|NYNRIN	MULTI-MSMS	A375_MHC_IP_R2	2	615.3524169921875	2	614.8693	1227.72405	-0.61736	-0.00037959	-0.028959	-1.7806E-05	-0.64632	-0.0003974	614.8693792179845	106.16	0.96958	106.92	106.37	107.34	0.75977					40	18	3	0	0	0	0.64579	1	40153	40153		20.454	0	1	4331200	+		14355	22589	10444	10522	13973	13973					0.11929385521830227
FGRDYLLEI	9	Unmodified	_FGRDYLLEI_					0	0	0		nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154263|ENST00000690296|ABCA10;ENST00000519732.5_1_17:67144970-67171813:-|nuORF;ENST00000522406.5_1_17:67144970-67178294:-|nuORF;ENST00000518929.5_1_17:67144970-67149609:-|nuORF	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-MSMS	A375_MHC_IP_R1	1	563.746826171875	2	563.300581	1124.58661	-0.38773	-0.00021841	0.057136	3.2185E-05	-0.3306	-0.00018623	563.300397019832	102.71	1.2184	102.71	102.3	103.52	0					51	23	4	0	0	0	0.068433	2	37726	37702;37726		70.332	14.155	1	13275000			14356	6077	10445	10523	13974;13975	13975					0.029300121317419325
FGRDYLLEI	9	Unmodified	_FGRDYLLEI_					0	0	0		nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154263|ENST00000690296|ABCA10;ENST00000519732.5_1_17:67144970-67171813:-|nuORF;ENST00000522406.5_1_17:67144970-67178294:-|nuORF;ENST00000518929.5_1_17:67144970-67149609:-|nuORF	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-MSMS	A375_MHC_IP_R2	2	563.7479858398438	2	563.300581	1124.58661	-0.47004	-0.00026477	0.055382	3.1197E-05	-0.41466	-0.00023358	563.3004955346921	101.78	1.017	102.54	102.21	103.23	0.76428					51	19	5	0	0	0	0.26911	1	38540	38540		41.956	1.9982	1	15132000			14357	6077	10445	10523	13976	13976					0.029300121317419325
FGRKLCLLTT	10	Unmodified	_FGRKLCLLTT_					0	0	0		nc|ENSG00000112499|O15244-3|SLC22A2;nc|ENSG00000112499|O15244-2|SLC22A2;ENSG00000112499|ENST00000366953|SLC22A2	nc|ENSG00000112499|O15244-3|SLC22A2	nc|ENSG00000112499|O15244-3|SLC22A2	MULTI-SECPEP	A375_MHC_IP_R1	1	384.9588928222656	3	384.55836	1150.65325	0.12845	4.9398E-05	0.15104	5.8083E-05	0.27949	0.00010748	384.55843288351514	37.938	0.51147	37.938	37.607	38.118	0					20	9	3	0	0	0	0.89761	1	12797	12797		19.626	5.2206	1	9882400			14358	3091	10446	10524	13977	13977					0.08394924421986616
FGRKLCLLTT	10	Unmodified	_FGRKLCLLTT_					0	0	0		nc|ENSG00000112499|O15244-3|SLC22A2;nc|ENSG00000112499|O15244-2|SLC22A2;ENSG00000112499|ENST00000366953|SLC22A2	nc|ENSG00000112499|O15244-3|SLC22A2	nc|ENSG00000112499|O15244-3|SLC22A2	MULTI-MSMS	A375_MHC_IP_R2	2	384.28662109375	3	384.55836	1150.65325	-0.69159	-0.00026596	0.25961	9.9833E-05	-0.43198	-0.00016612	384.5583210943618	36.799	1.1201	37.57	37.308	38.429	0.7709					31	18	3	0	0	0	0.70651	1	13461	13461		5.4027	0.68679	1	10746000			14359	3091	10446	10524	13978	13978					0.08394924421986616
FGRKNKQRF	9	Unmodified	_FGRKNKQRF_					0	0	0			REV__ENST00000576348.1_1_16:14014055-14020614:+|nuORF	REV__ENST00000576348.1_1_16:14014055-14020614:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	394.2716979980469	3	394.228113	1179.66251	-0.17527	-6.9096E-05	-0.11447	-4.5129E-05	-0.28974	-0.00011422	394.22803616357487	27.982	0.95745	27.982	27.533	28.491	0					59	18	4	0	0	0	0.64971	2	8520	8520;8558		11.495	4.1691	1	28819000	+		14360	21353	10447	10525	13979;13980	13979					0.07986453822536532
FGRKNKQRF	9	Unmodified	_FGRKNKQRF_					0	0	0			REV__ENST00000576348.1_1_16:14014055-14020614:+|nuORF	REV__ENST00000576348.1_1_16:14014055-14020614:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	394.27178955078125	3	394.228113	1179.66251	-0.19725	-7.7762E-05	-0.008168	-3.2201E-06	-0.20542	-8.0982E-05	394.22806309007666	27.187	0.96883	27.866	27.433	28.401	0.67857					52	18	4	0	0	0	0.69317	1	9295	9295		7.609	7.609	1	36013000	+		14361	21353	10447	10525	13981	13981					0.07986453822536532
FGRLVNLQHL	10	Unmodified	_FGRLVNLQHL_					0	0	0		ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	MSMS	A375_MHC_IP_R2	2	399.6332702636719	3	399.568135	1195.68258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.257	1	23.887	23.387	24.387	0.63014								0	0	0	0.15531	1	7451	7451		3.5871	0	1				14362	2842	10448	10526	13982	13982					0.09256204762505149
FGRMLVGL	8	Unmodified	_FGRMLVGL_					0	0	0			REV__OR51B5|p.S153F|1|0.21|ENSG00000167355|chr11:5343067-5343067|G/A|missense_variant	REV__OR51B5|p.S153F|1|0.21|ENSG00000167355|chr11:5343067-5343067|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	446.6556091308594	2	446.757298	891.500044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.711	1	55.462	54.962	55.962	0.75075								0	0	0	0.16876	1	20652	20652		6.3541	0	1		+		14363	20750	10449	10527	13983	13983					0.04995354096217852
FGRPLLLL	8	Unmodified	_FGRPLLLL_					0	0	0			REV__ENSG00000109758|ENST00000382774|HGFAC	REV__ENSG00000109758|ENST00000382774|HGFAC	MULTI-MSMS	A375_MHC_IP_R2	2	465.20263671875	2	464.802563	927.590573	-0.44519	-0.00020693	0.1951	9.0685E-05	-0.25009	-0.00011624	464.8025352570881	111.04	0.50829	111.78	111.45	111.96	0.73692					14	9	2	0	0	0	0.75322	1	41867	41867		19.439	0	1	2032800	+	+	14364	17595	10450	10528	13984	13984					0.1238814641612862
FGRPLLLL	8	Unmodified	_FGRPLLLL_					0	0	0			REV__ENSG00000109758|ENST00000382774|HGFAC	REV__ENSG00000109758|ENST00000382774|HGFAC	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	464.802563	927.590573	-0.44519	-0.00020693	0.1951	9.0685E-05	-0.25009	-0.00011624	464.8025352570881	111.04	0.50829	111.78	111.45	111.96	0.73692	-0.15638	0.00037302	NaN	19.439	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2032800	+	+	14365	17595	10450	10528							0.1238814641612862
FGRPPHLIGP	10	Unmodified	_FGRPPHLIGP_					0	0	0		nc|ENSG00000158352|Q9ULL8-2|SHROOM4;ENSG00000158352|ENST00000376020|SHROOM4	nc|ENSG00000158352|Q9ULL8-2|SHROOM4	nc|ENSG00000158352|Q9ULL8-2|SHROOM4	MULTI-MSMS	A375_MHC_IP_R2	2	364.2693176269531	3	364.210059	1089.60835	-0.39971	-0.00014558	-0.066555	-2.424E-05	-0.46627	-0.00016982	364.2099431565508	26.527	0.50916	27.187	27.008	27.517	0.65992					12	9	2	0	0	0	0.70329	1	9048	9048		6.1918	0	1	2321800			14366	6302	10451	10529	13985	13985					0.06712861670962411
FGRPRVAS	8	Unmodified	_FGRPRVAS_					0	0	0		ENSG00000161850|ENST00000257974|KRT82;CON__Q9NSB4	ENSG00000161850|ENST00000257974|KRT82	ENSG00000161850|ENST00000257974|KRT82	MSMS	A375_MHC_IP_R2	2	445.2984313964844	2	445.253769	888.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.249	1	27.927	27.427	28.427	0.67857								0	0	0	0.16876	1	9285	9285		9.3474	0.75416	1			+	14367	634	10452	10530	13986	13986					0.044277575399860325
FGRWQQIQWNR	11	Unmodified	_FGRWQQIQWNR_					0	0	0			REV__ENST00000455839.5_1_1:151339298-151341653:-|nuORF	REV__ENST00000455839.5_1_1:151339298-151341653:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	507.3290100097656	3	506.928615	1517.76401	-0.51862	-0.0002629	0.70038	0.00035504	0.18176	9.2139E-05	506.92918528544914	27.561	2.0226	27.561	27.229	29.252	0					107	39	5	0	0	0	0.73679	1	8319	8319		2.4348	1.22	1	33459000	+		14368	24932	10453	10531	13987	13987					0.025842804544481623
FGSAVPRNV	9	Unmodified	_FGSAVPRNV_					0	0	0		nc|ENSG00000100207|Q9UGU0-2|TCF20;ENSG00000100207|ENST00000677622|TCF20	nc|ENSG00000100207|Q9UGU0-2|TCF20	nc|ENSG00000100207|Q9UGU0-2|TCF20	MULTI-SECPEP	A375_MHC_IP_R2	2	473.6658935546875	2	473.758884	945.503215	-0.70573	-0.00033435	1.5304	0.00072505	0.82468	0.0003907	473.7596638671071	35.886	0.51074	36.649	36.486	36.997	0.76338					11	9	2	0	0	0	0.71341	1	13015	13015		13.042	4.2971	1	1461300			14369	2132	10454	10532	13988	13988					0.02828320474566226
FGSEDKYDF	9	Unmodified	_FGSEDKYDF_					0	0	0			REV__ENSG00000131507|ENST00000253814|NDFIP1	REV__ENSG00000131507|ENST00000253814|NDFIP1	MSMS	A375_MHC_IP_R1	1	554.2009887695312	2	554.235104	1106.45566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.663	1	66.663	66.163	67.163	0								0	0	0	0.15486	1	24145	24145		13.508	0	1		+		14370	18612	10455	10533	13989	13989					-0.09331423306957731
FGSEDKYDF	9	Unmodified	_FGSEDKYDF_					0	0	0			REV__ENSG00000131507|ENST00000253814|NDFIP1	REV__ENSG00000131507|ENST00000253814|NDFIP1	MSMS	A375_MHC_IP_R2	2	554.2008056640625	2	554.235104	1106.45566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.814	1	66.552	66.052	67.052	0.73811								0	0	0	0.15486	1	24955	24955		13.508	0	1		+		14371	18612	10455	10533	13990	13990					-0.09331423306957731
FGSFHIHI	8	Unmodified	_FGSFHIHI_					0	0	0			REV__ENST00000436865.5_1_1:155629450-155649007:-|nuORF	REV__ENST00000436865.5_1_1:155629450-155649007:-|nuORF	MSMS	A375_MHC_IP_R2	2	479.64862060546875	2	479.250695	956.486836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.05	1	100.81	100.31	101.31	0.76278								0	0	0	0.16876	1	37944	37944		9.3474	2.9933	1		+		14372	24769	10456	10534	13991	13991					0.00685239308461405
FGSFLIPDQL	10	Unmodified	_FGSFLIPDQL_					0	0	0			REV__ABCC9|p.S1402F|1|0.44|ENSG00000069431|chr12:21812055-21812055|G/A|missense_variant	REV__ABCC9|p.S1402F|1|0.44|ENSG00000069431|chr12:21812055-21812055|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	569.0548095703125	2	568.802957	1135.59136	-0.42443	-0.00024142	-4.0561	-0.0023071	-4.4805	-0.0025485	568.8007061477791	76.779	0.20595	76.779	76.673	76.878	0					6	3	2	0	0	0	0.8125	1	28020	28020		18.146	0	1	765930	+		14373	15288	10457	10535	13992	13992					0.028988962745188473
FGSFLVFFW	9	Unmodified	_FGSFLVFFW_					0	0	0			REV__ENST00000367537.7_2_1:183523118-183523304:+|nuORF	REV__ENST00000367537.7_2_1:183523118-183523304:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	576.0873413085938	2	575.292028	1148.5695	-0.094048	-5.4105E-05	0.20424	0.0001175	0.1102	6.3394E-05	575.2924223904018	47.693	0.66009	47.693	47.159	47.819	0					14	12	2	0	0	0	0.67483	1	16622	16622		20.454	0	1	1573700	+		14374	23973	10458	10536	13993	13993					0.0011613631661475665
FGSFLVFFW	9	Unmodified	_FGSFLVFFW_					0	0	0			REV__ENST00000367537.7_2_1:183523118-183523304:+|nuORF	REV__ENST00000367537.7_2_1:183523118-183523304:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	575.292028	1148.5695	-0.013884	-7.9875E-06	1.5512	0.00089238	1.5373	0.00088439	575.2928905899722	46.82	0.35465	47.581	47.361	47.715	0.76127	-0.055978	0.00064001	NaN	20.454	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1778100	+		14375	23973	10458	10536							0.0011613631661475665
FGSKPATGF	9	Unmodified	_FGSKPATGF_					0	0	0		ENST00000460326.5_1_13:25875911-25883431:+|nuORF;ENST00000480187.5_1_13:25875911-25882190:+|nuORF;ENST00000495460.1_1_13:25875911-25891836:+|nuORF;nc|ENSG00000139496|Q9BVL2-2|NUP58;ENST00000466694.5_1_13:25875911-25912925:+|nuORF;nc|ENSG00000139496|Q9BVL2-3|NUP58;ENSG00000139496|ENST00000381736|NUP58	ENST00000460326.5_1_13:25875911-25883431:+|nuORF	ENST00000460326.5_1_13:25875911-25883431:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	456.6349792480469	2	456.23471	910.454868	-0.20414	-9.3137E-05	0.43215	0.00019716	0.228	0.00010402	456.234860020663	53.575	0.8137	53.575	53.199	54.013	0					44	15	4	0	0	0	0.13797	1	19070	19070		43.858	2.0187	1	22032000			14376	5079	10459	10537	13994	13994					-0.003941731653412717
FGTAVIKEY	9	Unmodified	_FGTAVIKEY_					0	0	0		nc|ENSG00000163576|Q8N7U6-2|EFHB;ENST00000498089.1_1_3:19936277-19975510:-|nuORF;nc|ENSG00000163576|Q8N7U6-3|EFHB;ENSG00000163576|ENST00000295824|EFHB	nc|ENSG00000163576|Q8N7U6-2|EFHB	nc|ENSG00000163576|Q8N7U6-2|EFHB	MULTI-SECPEP	A375_MHC_IP_R2	2	513.6319580078125	2	514.276575	1026.5386	-1.0001	-0.00051432	0.36219	0.00018626	-0.63791	-0.00032806	514.2769392292488	54.36	0.40416	55.11	54.865	55.269	0.75075					9	7	2	0	0	0	0.61758	1	20530	20530		12.175	0	1	655100			14377	6687	10460	10538	13995	13995					0.026389382117031346
FGTIRTIDY	9	Unmodified	_FGTIRTIDY_					0	0	0		RBM15|p.L561*|1|0.15|ENSG00000162775|chr1:110341085-110341085|T/-|frameshift_variant;nc|ENSG00000162775|Q96T37-4|RBM15;nc|ENSG00000162775|Q96T37-2|RBM15;nc|ENSG00000162775|Q96T37-3|RBM15;ENSG00000162775|ENST00000369784|RBM15	RBM15|p.L561*|1|0.15|ENSG00000162775|chr1:110341085-110341085|T/-|frameshift_variant	RBM15|p.L561*|1|0.15|ENSG00000162775|chr1:110341085-110341085|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	544.2295532226562	2	543.284931	1084.55531	-0.60494	-0.00032865	-0.47953	-0.00026052	-1.0845	-0.00058918	543.2850347186412	64.245	2.2397	64.245	63.326	65.565	0					121	43	5	0	0	0	0.44024	1	23331	23331		22.736	3.4793	1	51186000			14378	6594	10461	10539	13996	13996					0.016414390976706272
FGTIRTIDY	9	Unmodified	_FGTIRTIDY_					0	0	0		RBM15|p.L561*|1|0.15|ENSG00000162775|chr1:110341085-110341085|T/-|frameshift_variant;nc|ENSG00000162775|Q96T37-4|RBM15;nc|ENSG00000162775|Q96T37-2|RBM15;nc|ENSG00000162775|Q96T37-3|RBM15;ENSG00000162775|ENST00000369784|RBM15	RBM15|p.L561*|1|0.15|ENSG00000162775|chr1:110341085-110341085|T/-|frameshift_variant	RBM15|p.L561*|1|0.15|ENSG00000162775|chr1:110341085-110341085|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	543.2159423828125	2	543.284931	1084.55531	-0.7634	-0.00041474	-0.54227	-0.00029461	-1.3057	-0.00070935	543.2849562659917	63.476	1.9319	64.217	63.531	65.463	0.74022					71	37	2	0	0	0	0.10495	1	24079	24079		74.2	58.051	1	45712000			14379	6594	10461	10539	13997	13997					0.016414390976706272
FGTLPRESR	9	Unmodified	_FGTLPRESR_					0	0	0		CYTIP|p.K331E|1|0.18|ENSG00000115165|chr2:157415766-157415766|T/C|missense_variant	CYTIP|p.K331E|1|0.18|ENSG00000115165|chr2:157415766-157415766|T/C|missense_variant	CYTIP|p.K331E|1|0.18|ENSG00000115165|chr2:157415766-157415766|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	531.7100830078125	2	531.788173	1061.56179	-1.0246	-0.00054486	2.5118	0.0013357	1.4872	0.00079087	532.2917812320453	57.382	0.5614	58.131	57.865	58.427	0.74894					17	10	2	0	0	0	0.35581	1	21750	21750		26.884	5.3467	1	1178400			14380	706	10462	10540	13998	13998					0.03347377049021816
FGTPYPRDL	9	Unmodified	_FGTPYPRDL_					0	0	0		ENSG00000142599|ENST00000400908|RERE;nc|ENSG00000142599|Q9P2R6-2|RERE	ENSG00000142599|ENST00000400908|RERE	ENSG00000142599|ENST00000400908|RERE	MULTI-MSMS	A375_MHC_IP_R1	1	533.671142578125	2	533.271824	1064.5291	-0.61626	-0.00032864	-0.70837	-0.00037775	-1.3246	-0.00070639	533.2714691006048	59.688	0.50803	59.688	59.397	59.905	0					13	9	2	0	0	0	0.39434	1	21493	21493		24.991	0.97039	1	1776600			14381	5314	10463	10541	13999	13999					-0.0005883007381726202
FGTSHPRYY	9	Unmodified	_FGTSHPRYY_					0	0	0		ENSG00000148154|ENST00000374279|UGCG	ENSG00000148154|ENST00000374279|UGCG	ENSG00000148154|ENST00000374279|UGCG	MULTI-SECPEP	A375_MHC_IP_R1	1	376.91375732421875	3	376.513807	1126.51959	0.19196	7.2277E-05	-0.27914	-0.0001051	-0.087176	-3.2823E-05	376.5136015471787	27.175	0.35332	27.175	26.978	27.331	0					12	6	2	0	0	0	0.60917	1	8208	8208		13.615	9.086	1	4983100			14382	5717	10464	10542	14000	14000					-0.03860598359347023
FGTVAQYFS	9	Unmodified	_FGTVAQYFS_					0	0	0			REV__ENST00000306107.9_3_3:105293399-105293480:+|nuORF	REV__ENST00000306107.9_3_3:105293399-105293480:+|nuORF	MSMS	A375_MHC_IP_R1	1	510.1817321777344	2	510.245275	1018.476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.97	1	103.97	103.47	104.47	0								0	0	0	0.1521	1	38178	38178		18.146	1.2041	1		+		14383	23466	10465	10543	14001	14001					-0.03250207856478937
FGVAVQEKV	9	Unmodified	_FGVAVQEKV_					0	0	0		ENST00000560420.1_1_14:24606925-24607473:+|nuORF;nc|ENSG00000092010|Q06323-3|PSME1;ENSG00000092010|ENST00000206451|PSME1;nc|ENSG00000092010|Q06323-2|PSME1	ENST00000560420.1_1_14:24606925-24607473:+|nuORF	ENST00000560420.1_1_14:24606925-24607473:+|nuORF	MSMS	A375_MHC_IP_R1	1	489.1817932128906	2	488.776742	975.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.954	1	29.954	29.454	30.454	0								0	0	0	0.13673	1	9455	9455		30.637	3.7529	1				14384	1989	10466	10544	14002	14002					0.05018357931567152
FGVLAVDTLRD	11	Unmodified	_FGVLAVDTLRD_					0	0	0		nc|ENSG00000176927|A4FU69-3|EFCAB5;ENSG00000176927|ENST00000394835|EFCAB5	nc|ENSG00000176927|A4FU69-3|EFCAB5	nc|ENSG00000176927|A4FU69-3|EFCAB5	MULTI-SECPEP	A375_MHC_IP_R1	1	402.61224365234375	3	402.555672	1204.64519	-0.075542	-3.041E-05	-0.02763	-1.1123E-05	-0.10317	-4.1533E-05	402.889895063651	45.462	0.24993	45.462	45.284	45.534	0					8	4	2	0	0	0	0.98968	1	15900	15900		13.519	3.3681	1	648630			14385	8045	10467	10545	14003	14003					0.05105068706234306
FGVLSSSI	8	Unmodified	_FGVLSSSI_					0	0	0			REV__ENSG00000134538|ENST00000256958|SLCO1B1	REV__ENSG00000134538|ENST00000256958|SLCO1B1	MSMS	A375_MHC_IP_R2	2	405.2912292480469	2	405.223811	808.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.039	1	19.642	19.142	20.142	0.60308								0	0	0	0.16876	1	5787	5787		9.3474	0	1		+		14386	18786	10468	10546	14004	14004					0.021190220860944464
FGVRLLPKR	9	Unmodified	_FGVRLLPKR_					0	0	0		SLX4|p.P1585L|1|0.26|ENSG00000188827|chr16:3583496-3583496|G/A|missense_variant	SLX4|p.P1585L|1|0.26|ENSG00000188827|chr16:3583496-3583496|G/A|missense_variant	SLX4|p.P1585L|1|0.26|ENSG00000188827|chr16:3583496-3583496|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	362.4679260253906	3	362.569588	1084.68693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.918	1	51.918	51.418	52.418	0								0	0	0	0.15486	1	18446	18446		4.1895	1.691	1				14387	29209	10469	10547	14005	14005					0.1479771397607692
FGWPLKQSELS	11	Unmodified	_FGWPLKQSELS_					0	0	0			REV__ENST00000538265.5_1_17:41605518-41605791:-|nuORF	REV__ENST00000538265.5_1_17:41605518-41605791:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	431.2882080078125	3	431.227556	1290.66084	-0.15838	-6.8296E-05	-3.121	-0.0013459	-3.2794	-0.0014142	431.22636112072547	57.746	0.25475	57.746	57.618	57.873	0					6	4	2	0	0	0	0.99847	1	20728	20728		2.8433	1.6285	1	453260	+		14388	25933	10470	10548	14006	14006					0.02713355223295366
FGYDEVEA	8	Unmodified	_FGYDEVEA_					0	0	0			REV__ENSG00000105738|ENST00000222345|SIPA1L3	REV__ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-MSMS	A375_MHC_IP_R1	1	465.0997009277344	2	465.19799	928.381428	-0.021823	-1.0152E-05	1.1064	0.00051468	1.0845	0.00050453	465.19911725731725	92.388	0.65901	92.388	92.11	92.769	0					28	12	3	0	0	0	0.68907	2	33924	33924;33972		38.151	13.477	1	5552000	+		14389	17408	10471	10549	14007;14008	14007					-0.08562766398472377
FGYDEVEA	8	Unmodified	_FGYDEVEA_					0	0	0			REV__ENSG00000105738|ENST00000222345|SIPA1L3	REV__ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-MSMS	A375_MHC_IP_R2	2	465.5985107421875	2	465.19799	928.381428	-0.55004	-0.00025588	1.0619	0.00049399	0.51185	0.00023811	465.19903535099735	91.668	0.76004	92.402	92.071	92.831	0.7345					31	14	3	0	0	0	0.68907	2	34830	34830;34848		38.151	13.477	1	6389500	+		14390	17408	10471	10549	14009;14010	14009					-0.08562766398472377
FGYDEVEA	8	Unmodified	_FGYDEVEA_					0	0	0			REV__ENSG00000105738|ENST00000222345|SIPA1L3	REV__ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-SECPEP	A375_MHC_IP_R2	2	465.5985107421875	2	465.19799	928.381428	-0.55004	-0.00025588	1.0619	0.00049399	0.51185	0.00023811	465.19903535099735	91.668	0.76004	92.402	92.071	92.831	0.7345					31	14	3	0	0	0	0.8211	1	34830	34830		38.151	38.151	1	6389500	+		14391	17408	10471	10549	14011	14011					-0.08562766398472377
FGYLLPIVSF	10	Unmodified	_FGYLLPIVSF_					0	0	0		ENST00000488876.5_1_17:37814522-37819158:+|nuORF;nc|ENSG00000131748|Q14849-2|STARD3;ENSG00000131748|ENST00000336308|STARD3;ENST00000544210.6_1_17:37814089-37815307:+|nuORF;ENST00000583582.5_1_17:37814522-37814894:+|nuORF;ENST00000484773.6_1_17:37809763-37814894:+|nuORF	ENST00000488876.5_1_17:37814522-37819158:+|nuORF	ENST00000488876.5_1_17:37814522-37819158:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	385.5924377441406	3	385.886471	1154.63758	0.094041	3.6289E-05	2.2973	0.00088649	2.3913	0.00092277	385.8869435424144	31.115	0.5079	31.115	30.754	31.262	0					23	9	3	0	0	0	0.71811	1	9926	9926		4.1895	0.59683	1	1246500			14392	4348	10472	10550	14012	14012					0.06644961176607467
FGYLVILIFY	10	Unmodified	_FGYLVILIFY_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-SECPEP	A375_MHC_IP_R2	2	623.9834594726562	2	624.357368	1246.70018	-0.58111	-0.00036282	-1.1805	-0.00073705	-1.7616	-0.0010999	624.3573252804365	111.9	1.0262	112.63	111.79	112.82	0.72458					24	19	2	0	0	0	0.8716	1	42119	42119		12.532	8.2023	1	3793800			14393	1125	10473	10551	14013	14013					0.08670107244802239
FGYQSSSRFYV	11	Unmodified	_FGYQSSSRFYV_					0	0	0		ENSG00000186340|ENST00000617924|THBS2;ENST00000488355.1_1_6:169617703-169623454:-|nuORF;ENST00000484734.1_1_15:39885316-39885917:+|nuORF;nc|ENSG00000137801|P07996-2|THBS1;ENSG00000137801|ENST00000260356|THBS1;CON__Q28194	ENSG00000186340|ENST00000617924|THBS2;ENST00000484734.1_1_15:39885316-39885917:+|nuORF	ENSG00000186340|ENST00000617924|THBS2	MSMS	A375_MHC_IP_R2	2	447.6396179199219	3	447.547177	1339.6197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.543	1	40.318	39.818	40.818	0.77451								0	0	0	0.16232	1	14606	14606		6.6235	3.9922	1			+	14394	8742;608	10474	10552	14014	14014					-0.03652405816183091
FGYSRHTPF	9	Unmodified	_FGYSRHTPF_					0	0	0		ENST00000398073.6_1_12:58216891-58217005:-|nuORF	ENST00000398073.6_1_12:58216891-58217005:-|nuORF	ENST00000398073.6_1_12:58216891-58217005:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	371.5823059082031	3	371.182169	1110.52468	0.22984	8.5311E-05	0.11764	4.3667E-05	0.34748	0.00012898	371.18218734213434	41.907	1.2177	41.907	41.674	42.891	0					55	23	5	0	0	0	0.35628	1	14475	14475		28.234	28.234	1	73315000			14395	11516	10475	10553	14015	14015					-0.026162944967154544
FGYSRHTPF	9	Unmodified	_FGYSRHTPF_					0	0	0		ENST00000398073.6_1_12:58216891-58217005:-|nuORF	ENST00000398073.6_1_12:58216891-58217005:-|nuORF	ENST00000398073.6_1_12:58216891-58217005:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	556.6364135742188	2	556.269616	1110.52468	-0.65664	-0.00036527	0.38777	0.00021571	-0.26887	-0.00014957	556.2698311643875	41.909	0.6627	41.909	41.622	42.285	0					26	11	3	0	0	0	0.14273	1	14528	14528		65.474	65.474	1	17014000			14396	11516	10475	10553	14016	14016					-0.026162944967154544
FGYSRHTPF	9	Unmodified	_FGYSRHTPF_					0	0	0		ENST00000398073.6_1_12:58216891-58217005:-|nuORF	ENST00000398073.6_1_12:58216891-58217005:-|nuORF	ENST00000398073.6_1_12:58216891-58217005:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	556.6693115234375	2	556.269616	1110.52468	-1.0353	-0.00057593	0.36078	0.00020069	-0.67457	-0.00037524	556.2698267486552	41.113	0.55766	41.888	41.641	42.198	0.77451					19	10	2	0	0	0	0.0090499	1	15228	15228		100.09	60.141	1	12890000			14397	11516	10475	10553	14017	14017					-0.026162944967154544
FGYSRHTPF	9	Unmodified	_FGYSRHTPF_					0	0	0		ENST00000398073.6_1_12:58216891-58217005:-|nuORF	ENST00000398073.6_1_12:58216891-58217005:-|nuORF	ENST00000398073.6_1_12:58216891-58217005:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	371.5820007324219	3	371.182169	1110.52468	0.14816	5.4994E-05	-0.17711	-6.5742E-05	-0.028956	-1.0748E-05	371.1820630493934	41.096	1.4772	41.87	41.59	43.067	0.77451					56	28	4	0	0	0	0.42978	1	15204	15204		36.395	36.395	1	65255000			14398	11516	10475	10553	14018	14018					-0.026162944967154544
FHAPYGLMHV	10	Unmodified	_FHAPYGLMHV_					0	0	0			REV__ENSG00000213983|ENST00000397120|AP1G2	REV__ENSG00000213983|ENST00000397120|AP1G2	MSMS	A375_MHC_IP_R2	2	391.1332092285156	3	391.195421	1170.56443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.4	1	114.11	113.61	114.61	0.70985								0	0	0	0.15585	1	42756	42756		0.77653	0.14971	1		+		14399	22638	10476	10554	14019	14019					-0.014024908176907047
FHDPAVTL	8	Unmodified	_FHDPAVTL_					0	0	0		ENSG00000112299|ENST00000367928|VNN1	ENSG00000112299|ENST00000367928|VNN1	ENSG00000112299|ENST00000367928|VNN1	MULTI-MSMS	A375_MHC_IP_R2	2	450.17108154296875	2	450.23471	898.454868	-0.47967	-0.00021597	-0.13025	-5.8642E-05	-0.60992	-0.00027461	450.23465324117336	41.279	0.81379	42.053	41.845	42.659	0.77451					27	15	3	0	0	0	0.77123	1	15553	15553		14.582	0	1	3369700			14400	3071	10477	10555	14020	14020					0.001578268346634104
FHETLSSL	8	Unmodified	_FHETLSSL_					0	0	0			REV__ENST00000372333.3_1_10:81146103-81203947:-|nuORF	REV__ENST00000372333.3_1_10:81146103-81203947:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	467.63714599609375	2	467.23745	932.460347	-0.77756	-0.0003633	0.50134	0.00023425	-0.27621	-0.00012906	467.2376573502396	66.325	0.91827	67.061	66.78	67.698	0.73631					22	17	2	0	0	0	0.24409	1	25157	25157		63.563	3.1733	1	1738400	+		14401	20581	10478	10556	14021	14021					-0.008584943735058914
FHFIITLLSP	10	Unmodified	_FHFIITLLSP_					0	0	0			REV__XPO6|p.T273I|1|0.31|ENSG00000169180|chr16:28156353-28156353|G/A|missense_variant	REV__XPO6|p.T273I|1|0.31|ENSG00000169180|chr16:28156353-28156353|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	396.59320068359375	3	396.56562	1186.67503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.483	1	21.093	20.593	21.593	0.61029								0	0	0	0.15435	1	6378	6378		3.5871	0.26742	1		+		14402	29005	10479	10557	14022	14022					0.08916052442236833
FHFQRIERIEH	11	Unmodified	_FHFQRIERIEH_					0	0	0			REV__ENST00000577827.5_1_18:8296422-8376613:+|nuORF	REV__ENST00000577827.5_1_18:8296422-8376613:+|nuORF	MSMS	A375_MHC_IP_R1	1	756.7976684570312	2	756.396941	1510.77933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.746	1	95.746	95.246	96.246	0								0	0	0	0.16273	1	35192	35192		4.5289	1.5336	1		+		14403	21226	10480	10558	14023	14023					0.04437147251655915
FHGNKRQAK	9	Unmodified	_FHGNKRQAK_					0	0	0			REV__ENST00000423325.6_1_6:35858793-35888866:-|nuORF	REV__ENST00000423325.6_1_6:35858793-35888866:-|nuORF	MSMS	A375_MHC_IP_R2	2	543.1978759765625	2	543.301781	1084.58901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.578	1	22.197	21.697	22.697	0.61932								0	0	0	0.15486	1	6806	6806		7.2892	1.0834	1		+		14404	24613	10481	10559	14024	14024					0.05009905380074997
FHHFWRRRLQR	11	Unmodified	_FHHFWRRRLQR_					0	0	0			REV__ENSG00000179314|ENST00000317744|WSCD1	REV__ENSG00000179314|ENST00000317744|WSCD1	MSMS	A375_MHC_IP_R2	2	820.12158203125	2	819.953084	1637.89161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.66	1	112.39	111.89	112.89	0.72458								0	0	0	0.16354	1	42098	42098		0.30703	0.03801	1		+		14405	21555	10482	10560	14025	14025					0.0981846583913466
FHHTIMPWTW	10	Unmodified	_FHHTIMPWTW_					0	0	0		ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	MULTI-SECPEP	A375_MHC_IP_R1	1	678.7211303710938	2	678.321325	1354.6281	-0.72611	-0.00049254	0.28296	0.00019194	-0.44315	-0.0003006	678.321410794958	47.133	0.5662	47.133	46.85	47.416	0					19	10	2	0	0	0	0.85226	1	16559	16559		20.454	20.454	1	7088700			14406	6796	10483	10561	14026	14026					-0.03503130380568109
FHHTIMPWTW	10	Unmodified	_FHHTIMPWTW_					0	0	0		ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	MULTI-MSMS	A375_MHC_IP_R2	2	678.7207641601562	2	678.321325	1354.6281	-0.54158	-0.00036736	-0.15333	-0.00010401	-0.69491	-0.00047137	678.3212055727021	46.393	0.56011	47.158	46.855	47.416	0.76519					22	10	3	0	0	0	0.6806	1	17348	17348		14.838	1.7958	1	4853300			14407	6796	10483	10561	14027	14027					-0.03503130380568109
FHHTIMPWTW	10	Unmodified	_FHHTIMPWTW_					0	0	0		ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	678.321325	1354.6281	-0.54158	-0.00036736	-0.15333	-0.00010401	-0.69491	-0.00047137	678.3212055727021	46.393	0.56011	47.158	46.855	47.416	0.76519	0.012661	-0.00023478	NaN	14.838	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4853300			14408	6796	10483	10561							-0.03503130380568109
FHIFYYMI	8	Unmodified	_FHIFYYMI_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-MSMS	A375_MHC_IP_R2	2	567.6798095703125	2	567.278063	1132.54157	-0.32963	-0.00018699	-1.1866	-0.00067311	-1.5162	-0.0008601	567.2772748896901	73.452	0.81603	74.187	73.938	74.754	0.73541					33	15	3	0	0	0	0.76194	1	28064	28064		17.087	0.14425	1	2352400			14409	4507	10484	10562	14028	14028					-0.01939509935141359
FHIKMVESM	9	Unmodified	_FHIKMVESM_					0	0	0		nc|ENSG00000100395|Q969R5-2|L3MBTL2;nc|ENSG00000100395|Q969R5-3|L3MBTL2;ENST00000466589.5_1_22:41601366-41623356:+|nuORF;ENSG00000100395|ENST00000216237|L3MBTL2;ENST00000479978.5_1_22:41615341-41623356:+|nuORF	nc|ENSG00000100395|Q969R5-2|L3MBTL2	nc|ENSG00000100395|Q969R5-2|L3MBTL2	MULTI-MSMS	A375_MHC_IP_R2	2	561.6768188476562	2	561.277738	1120.54092	-0.59697	-0.00033506	-0.88241	-0.00049528	-1.4794	-0.00083034	561.2771217781266	70.602	0.55705	71.336	70.946	71.503	0.73421					19	9	3	0	0	0	0.22528	1	26791	26791		36.127	36.127	1	3992600			14410	2173	10485	10563	14029	14029					-0.014526726464737294
FHKAYCVTMA	10	Unmodified	_FHKAYCVTMA_					0	0	0			REV__ENST00000523102.5_1_12:6980128-6980251:-|nuORF	REV__ENST00000523102.5_1_12:6980128-6980251:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	586.1751098632812	2	585.775362	1169.53617	-0.73679	-0.00043159	0.76351	0.00044725	0.026726	1.5656E-05	585.7756882042062	35.273	1.1676	36.037	35.778	36.946	0.76338					48	22	3	0	0	0	0.55789	1	12702	12702		24.021	24.021	1	4456100	+		14411	25738	10486	10564	14030	14030					-0.041815567892399486
FHKFGNKSEDY	11	Unmodified	_FHKFGNKSEDY_					0	0	0		tr|U7SUB9|U7SUB9_FUSNUROKfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01370PE=3SV=1	tr|U7SUB9|U7SUB9_FUSNUROKfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01370PE=3SV=1	tr|U7SUB9|U7SUB9_FUSNUROKfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01370PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	458.2821960449219	3	457.882448	1370.62551	-0.61055	-0.00027956	0.15835	7.2507E-05	-0.45219	-0.00020705	457.88249255225645	23.516	0.45484	24.146	23.878	24.333	0.63015					21	8	4	0	0	0	0.73502	1	7590	7590		4.1166	0	1	21865000			14412	29754	10487	10565	14031	14031					-0.04497307304518472
FHKHQEGNF	9	Unmodified	_FHKHQEGNF_					0	0	0			REV__nc|ENSG00000137942|Q5T0N5-3|FNBP1L	REV__nc|ENSG00000137942|Q5T0N5-3|FNBP1L	MULTI-MSMS	A375_MHC_IP_R2	2	572.1954345703125	2	572.270147	1142.52574	-0.31452	-0.00017999	-0.95138	-0.00054445	-1.2659	-0.00072444	572.2695957559122	39.94	0.45731	40.714	40.422	40.879	0.77451					13	8	2	0	0	0	0.44024	1	14749	14749		22.736	2.2827	1	1329100	+		14413	19049	10488	10566	14032	14032					-0.03982080127821064
FHKWRLRP	8	Unmodified	_FHKWRLRP_					0	0	0			REV__ENST00000490537.6_1_13:37581140-37582206:+|nuORF	REV__ENST00000490537.6_1_13:37581140-37582206:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	380.9575500488281	3	380.557682	1138.65122	-0.057692	-2.1955E-05	0.18114	6.8935E-05	0.12345	4.698E-05	380.5576707664891	81.848	0.45779	82.591	82.381	82.839	0.74293					21	8	3	0	0	0	0.7779	1	31105	31105		1.6526	1.6526	1	2866800	+		14414	25387	10489	10567	14033	14033					0.08743676519065957
FHLGEEESF	9	Unmodified	_FHLGEEESF_					0	0	0			REV__ENST00000366983.5_1_1:212792493-212792673:+|nuORF	REV__ENST00000366983.5_1_1:212792493-212792673:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	547.670166015625	2	547.743096	1093.47164	-0.73657	-0.00040345	-0.0090552	-4.9599E-06	-0.74563	-0.00040841	547.7430221659802	63.269	1.826	64.01	63.28	65.106	0.74035					109	35	5	0	0	0	0.5339	1	24327	24327		18.135	3.5533	1	28325000	+		14415	23947	10490	10568	14034	14034					-0.07135717070036662
FHLIPIRPKPR	11	Unmodified	_FHLIPIRPKPR_					0	0	0			REV__ENSG00000175711|ENST00000320865|B3GNTL1	REV__ENSG00000175711|ENST00000320865|B3GNTL1	MULTI-SECPEP	A375_MHC_IP_R2	2	687.8306884765625	2	687.430056	1372.84556	-0.4839	-0.00033265	2.2976	0.0015794	1.8137	0.0012468	687.4315411107533	137.09	0.20712	137.2	137.07	137.28	0.11134					7	3	3	0	0	0	1.0014	1	53840	53840		0.35063	0.043601	1	1716400	+		14416	21361	10491	10569	14035	14035					0.17405007884349288
FHLLRNDTTQL	11	Unmodified	_FHLLRNDTTQL_					0	0	0			REV__ENSG00000138193|ENST00000371380|PLCE1	REV__ENSG00000138193|ENST00000371380|PLCE1	MULTI-MSMS	A375_MHC_IP_R1	1	680.5972290039062	2	679.364776	1356.715	-0.61906	-0.00042057	-0.51901	-0.00035259	-1.1381	-0.00077316	679.3645364781246	79.753	0.61473	79.753	79.316	79.931	0					28	11	3	0	0	0	0.73332	1	29103	29103		5.7319	0.43497	1	11878000	+		14417	19077	10492	10570	14036	14036					0.05090947374856114
FHLVPPVSV	9	Unmodified	_FHLVPPVSV_					0	0	0		nc|ENSG00000091622|Q9BZ71-2|PITPNM3;nc|ENSG00000091622|Q9BZ71-3|PITPNM3;ENSG00000091622|ENST00000262483|PITPNM3	nc|ENSG00000091622|Q9BZ71-2|PITPNM3	nc|ENSG00000091622|Q9BZ71-2|PITPNM3	MSMS	A375_MHC_IP_R1	1	497.85748291015625	2	497.789653	993.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.731	1	88.731	88.231	89.231	0								0	0	0	0.15486	1	32581	32581		12.532	1.4171	1				14418	1983	10493	10571	14037	14037					0.06771252173848552
FHPALAVQ	8	Unmodified	_FHPALAVQ_					0	0	0		ENST00000485050.5_1_3:113805105-113805411:+|nuORF	ENST00000485050.5_1_3:113805105-113805411:+|nuORF	ENST00000485050.5_1_3:113805105-113805411:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	441.6578674316406	2	441.745245	881.475937	-0.043054	-1.9019E-05	-0.53136	-0.00023473	-0.57442	-0.00025375	441.7450174459987	73.06	0.50663	73.06	72.779	73.285	0					19	9	3	0	0	0	0.77123	1	26669	26669		14.582	0	1	2133700			14419	12570	10494	10572	14038	14038					0.030458369341772595
FHQESELEV	9	Unmodified	_FHQESELEV_					0	0	0		nc|ENSG00000118557|Q8TBY8-4|PMFBP1;ENSG00000118557|ENST00000237353|PMFBP1;nc|ENSG00000118557|Q8TBY8-1|PMFBP1;nc|ENSG00000118557|Q8TBY8-3|PMFBP1	nc|ENSG00000118557|Q8TBY8-4|PMFBP1	nc|ENSG00000118557|Q8TBY8-4|PMFBP1	MULTI-MSMS	A375_MHC_IP_R1	1	559.6617431640625	2	559.261653	1116.50875	-0.6289	-0.00035172	0.70518	0.00039438	0.076276	4.2658E-05	559.2621887095406	39.494	1.0158	39.494	39.187	40.203	0					42	19	3	0	0	0	0.070818	1	13479	13479		56.177	0.6743	1	15039000			14420	3552	10495	10573	14039	14039					-0.044840455242592725
FHRKAQQNRR	10	Unmodified	_FHRKAQQNRR_					0	0	0		ENSG00000144834|ENST00000478951|TAGLN3	ENSG00000144834|ENST00000478951|TAGLN3	ENSG00000144834|ENST00000478951|TAGLN3	MSMS	A375_MHC_IP_R1	1	447.7466735839844	3	447.585071	1339.73338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.687	1	20.687	20.187	21.187	0								0	0	0	0.15622	1	5345	5345		0.62683	0.12087	1				14421	5520	10496	10574	14040	14040					0.07710546860062095
FHRKFNKKRKK	11	Unmodified	_FHRKFNKKRKK_					0	0	0			REV__ENST00000274458.8_1_5:115426776-115426833:+|nuORF	REV__ENST00000274458.8_1_5:115426776-115426833:+|nuORF	MSMS	A375_MHC_IP_R2	2	758.6201171875	2	758.970411	1515.92627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.901	1	80.645	80.145	81.145	0.74474								0	0	0	0.16354	1	30331	30331		0.30703	0.30703	1		+		14422	23289	10497	10575	14041	14041					0.18894288927231173
FHRKNNHKQFY	11	Unmodified	_FHRKNNHKQFY_					0	0	0		nc|ENSG00000011332|Q92782-3|DPF1;ENSG00000011332|ENST00000355526|DPF1	nc|ENSG00000011332|Q92782-3|DPF1	nc|ENSG00000011332|Q92782-3|DPF1	MULTI-MSMS	A375_MHC_IP_R1	1	507.6560363769531	3	506.928615	1517.76401	-0.51862	-0.0002629	0.70038	0.00035504	0.18176	9.2139E-05	506.92918528544914	27.561	2.0226	27.561	27.229	29.252	0					107	39	5	0	0	0	0.73807	3	8792	8733;8792;9016		1.2148	1.2148	1	33459000			14423	999	10498	10576	14042;14043;14044	14043					0.025842804544481623
FHRNRRVTRR	10	Unmodified	_FHRNRRVTRR_					0	0	0		ENSG00000162490|ENST00000294485|DRAXIN	ENSG00000162490|ENST00000294485|DRAXIN	ENSG00000162490|ENST00000294485|DRAXIN	MULTI-MSMS	A375_MHC_IP_R2	2	699.8080444335938	2	699.408509	1396.80247	-0.5147	-0.00035999	0.23875	0.00016699	-0.27595	-0.000193	699.4083297436736	148.79	2.5388	148.81	147.47	150.01	0.018707					179	113	4	0	0	0	0.72481	1	57818	57818		1.1933	0	1	763050			14424	6538	10499	10577	14045	14045					0.11993630879624106
FHRNRRVTRR	10	Unmodified	_FHRNRRVTRR_					0	0	0		ENSG00000162490|ENST00000294485|DRAXIN	ENSG00000162490|ENST00000294485|DRAXIN	ENSG00000162490|ENST00000294485|DRAXIN	MULTI-SECPEP	A375_MHC_IP_R2	2	467.3421325683594	3	466.608098	1396.80247	-0.45292	-0.00021133	0.22388	0.00010447	-0.22903	-0.00010687	466.60809730728386	141.7	2.7592	141.74	139.98	142.74	0.034195					79	53	2	0	0	0	0.95032	1	55041	55041		0.62683	0.62683	1	1552600			14425	6538	10499	10577	14046	14046					0.11993630879624106
FHSNGLIW	8	Unmodified	_FHSNGLIW_					0	0	0			REV__ENST00000464470.1_1_13:32999202-32999613:-|nuORF	REV__ENST00000464470.1_1_13:32999202-32999613:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	487.6632080078125	2	487.248152	972.481751	-0.30263	-0.00014745	3.8129	0.0018578	3.5102	0.0017104	487.2516636225069	87.517	0.40719	87.517	87.34	87.747	0					11	7	2	0	0	0	0.74466	1	32181	32181		21.747	4.8044	1	923890	+		14426	25013	10500	10578	14047	14047					-0.005590645541360573
FHTDRRRRRQF	11	Unmodified	_FHTDRRRRRQF_					0	0	0			REV__ENSG00000105697|ENST00000222304|HAMP	REV__ENSG00000105697|ENST00000222304|HAMP	MULTI-MSMS	A375_MHC_IP_R2	2	787.8600463867188	2	787.929806	1573.84506	-0.88555	-0.00069775	1.6277	0.0012825	0.74214	0.00058476	788.432451984889	134.32	0.30835	134.46	134.24	134.55	0.13901					6	5	2	0	0	0	0.73891	1	52824	52824		0.26902	0	1	1368000	+		14427	17403	10501	10579	14048	14048					0.08108981217196742
FHTECQDYYC	10	Unmodified	_FHTECQDYYC_					0	0	0			REV__NEDD9|p.F710del|1|0.15|ENSG00000111859|chr6:11185536-11185538|AGA/-|inframe_deletion	REV__NEDD9|p.F710del|1|0.15|ENSG00000111859|chr6:11185536-11185538|AGA/-|inframe_deletion	MSMS	A375_MHC_IP_R2	2	654.451416015625	2	654.736631	1307.45871	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.509	1	50.266	49.766	50.766	0.75737								0	0	0	0.15591	1	18604	18604		1.6526	0	1		+		14428	27590	10502	10580	14049	14049					-0.18272239516068112
FHTLHSPSTPS	11	Unmodified	_FHTLHSPSTPS_					0	0	0			REV__ENSG00000115020|ENST00000264380|PIKFYVE	REV__ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-SECPEP	A375_MHC_IP_R2	2	605.1659545898438	2	605.796195	1209.57784	-0.24639	-0.00014926	-0.27881	-0.0001689	-0.5252	-0.00031816	605.796447211978	85.704	0.20187	86.44	86.29	86.492	0.73602					5	3	2	0	0	0	0.99676	1	32532	32532		5.7319	0.97584	1	607060	+		14429	17852	10503	10581	14050	14050					-0.018569615047226762
FHVQRKRWGE	10	Unmodified	_FHVQRKRWGE_					0	0	0			REV__chr2:238171024-238182065|103|15.89|0.76|4.38|-|0|ILKAP,ILKAP|1	REV__chr2:238171024-238182065|103|15.89|0.76|4.38|-|0|ILKAP,ILKAP|1	MULTI-MSMS	A375_MHC_IP_R1	1	448.9762878417969	3	448.242422	1341.70544	-0.0019838	-8.8923E-07	-1.0285	-0.00046101	-1.0305	-0.0004619	448.57619238333086	51.978	0.55813	51.978	51.778	52.336	0					21	10	3	0	0	0	0.71364	1	18493	18493		6.1918	1.2995	1	2666100	+		14430	15737	10504	10582	14051	14051					0.04825223879970508
FHVRTRIHKKK	11	Unmodified	_FHVRTRIHKKK_					0	0	0			REV__ENSG00000151838|ENST00000537690|CCDC175	REV__ENSG00000151838|ENST00000537690|CCDC175	MSMS	A375_MHC_IP_R1	1	725.6561279296875	2	725.449311	1448.88407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.4	1	146.4	145.9	146.9	0								0	0	0	0.16353	1	56010	56010		0.35063	0.35063	1		+		14431	19779	10505	10583	14052	14052					0.17758313518834257
FHVWFWNRWWL	11	Unmodified	_FHVWFWNRWWL_					0	0	0			REV__ENST00000437634.1_1_2:154277901-154278186:-|nuORF	REV__ENST00000437634.1_1_2:154277901-154278186:-|nuORF	MSMS	A375_MHC_IP_R2	2	559.5120849609375	3	559.613967	1675.82007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.199	1	21.819	21.319	22.319	0.61932								0	0	0	0.16358	1	6657	6657		0.08335	0.08335	1		+		14432	24773	10506	10584	14053	14053					0.009195333619345547
FHVWFWNRWWL	11	Unmodified	_FHVWFWNRWWL_					0	0	0			REV__ENST00000437634.1_1_2:154277901-154278186:-|nuORF	REV__ENST00000437634.1_1_2:154277901-154278186:-|nuORF	MSMS	A375_MHC_IP_R2	2	838.4437255859375	2	838.917313	1675.82007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.31	1	138.39	137.89	138.89	0.083969								0	0	0	0.1636	1	54241	54241		0	0	1		+		14433	24773	10506	10584	14054	14054					0.009195333619345547
FHYFPKNFSL	10	Unmodified	_FHYFPKNFSL_					0	0	0		ENSG00000170927|ENST00000371117|PKHD1;nc|ENSG00000170927|P08F94-2|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	433.28497314453125	3	433.888874	1298.64479	-0.45889	-0.00019911	-0.12985	-5.6343E-05	-0.58874	-0.00025545	434.22293204304924	135.65	0.46002	135.65	135.54	136	0					12	8	2	0	0	0	0.94891	1	52275	52275		0.69767	0.46182	1	458590			14434	7561	10507	10585	14055	14055					0.007416937770358345
FHYLGRPDPF	10	Unmodified	_FHYLGRPDPF_					0	0	0			REV__ENST00000565539.5_1_16:57684180-57697491:+|nuORF	REV__ENST00000565539.5_1_16:57684180-57697491:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	625.2108154296875	2	624.811648	1247.60874	-0.74984	-0.00046851	-0.54001	-0.00033741	-1.2899	-0.00080591	624.8112299936784	73.184	0.96921	73.92	73.581	74.551	0.7354					47	18	4	0	0	0	0.88038	1	27743	27743		24.991	24.991	1	23553000	+		14435	22568	10508	10586	14056	14056					-0.00515763399835123
FHYPESASYT	10	Unmodified	_FHYPESASYT_					0	0	0			REV__ENSG00000134775|ENST00000590592|FHOD3	REV__ENSG00000134775|ENST00000590592|FHOD3	MULTI-SECPEP	A375_MHC_IP_R1	1	600.706787109375	2	601.261653	1200.50875	-0.24305	-0.00014614	-1.4222	-0.00085511	-1.6652	-0.0010012	601.2609519630167	79.157	0.50816	79.157	78.859	79.367	0					11	9	2	0	0	0	0.93615	1	28913	28913		7.2892	5.6366	1	1190400	+		14436	18799	10509	10587	14057	14057					-0.08348045524303416
FIADLVVGL	9	Unmodified	_FIADLVVGL_					0	0	0		nc|ENSG00000108515|P13929-3|ENO3;nc|ENSG00000108515|P13929-2|ENO3;ENSG00000108515|ENST00000519602|ENO3;ENST00000522954.1_1_17:4859850-4860339:+|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;nc|ENSG00000111674|P09104-2|ENO2;ENSG00000111674|ENST00000229277|ENO2	nc|ENSG00000108515|P13929-3|ENO3;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000111674|P09104-2|ENO2	ENSG00000074800|ENST00000234590|ENO1	MULTI-MSMS	A375_MHC_IP_R2	2	946.96044921875	1	946.560795	945.553519	-0.15356	-0.00014535	1.0868	0.0010287	0.93321	0.00088334	946.5606580230178	131.73	0.91434	131.91	131.75	132.66	0.18954					33	17	4	0	0	0	0.021919	1	51867	51867		81.864	18.301	1	17729000			14437	1593;2809;3014	10510	10588	14058	14058					0.07856430079709753
FIADLVVGL	9	Unmodified	_FIADLVVGL_					0	0	0		nc|ENSG00000108515|P13929-3|ENO3;nc|ENSG00000108515|P13929-2|ENO3;ENSG00000108515|ENST00000519602|ENO3;ENST00000522954.1_1_17:4859850-4860339:+|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;nc|ENSG00000111674|P09104-2|ENO2;ENSG00000111674|ENST00000229277|ENO2	nc|ENSG00000108515|P13929-3|ENO3;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000111674|P09104-2|ENO2	ENSG00000074800|ENST00000234590|ENO1	MULTI-MATCH	A375_MHC_IP_R1	1		1	946.560795	945.553519	-0.21851	-0.00020683	0.23354	0.00022106	0.015034	1.4231E-05	946.5607048274711	131.92	0.80721	131.92	131.78	132.59	0	0.0022733	-0.00020165	NaN	81.864	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16383000			14438	1593;2809;3014	10510	10588							0.07856430079709753
FIAFLSPKV	9	Unmodified	_FIAFLSPKV_					0	0	0		ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	MULTI-SECPEP	A375_MHC_IP_R2	2	510.6758728027344	2	511.307678	1020.6008	-0.49895	-0.00025512	0.53942	0.00027581	0.040469	2.0692E-05	511.30802838416344	99.892	0.40501	100.65	100.37	100.78	0.76278					12	7	2	0	0	0	0.4465	1	37870	37870		38.176	20.041	1	750120			14439	6277	10511	10589	14059	14059					0.09132709350717505
FIAFYLLGMFI	11	Unmodified	_FIAFYLLGMFI_					0	0	0		ENSG00000099219|ENST00000339450|ERMP1	ENSG00000099219|ENST00000339450|ERMP1	ENSG00000099219|ENST00000339450|ERMP1	MULTI-SECPEP	A375_MHC_IP_R1	1	668.2643432617188	2	667.864503	1333.71445	-0.62974	-0.00042058	-0.51554	-0.00034431	-1.1453	-0.0007649	668.3654586137362	95.742	0.50341	95.742	95.515	96.018	0					13	9	2	0	0	0	0.97871	1	35184	35184		10.824	3.5347	1	2484100			14440	2069	10512	10590	14060	14060					0.06094436401440362
FIALTNYHLTG	11	Unmodified	_FIALTNYHLTG_					0	0	0		ENSG00000197296|ENST00000396825|FITM2	ENSG00000197296|ENST00000396825|FITM2	ENSG00000197296|ENST00000396825|FITM2	MULTI-MSMS	A375_MHC_IP_R2	2	417.6240234375	3	417.224034	1248.65027	-0.2894	-0.00012074	-0.16107	-6.7202E-05	-0.45047	-0.00018795	417.22395001024506	54.322	0.55582	55.073	54.814	55.37	0.75075					17	10	2	0	0	0	0.72801	1	20499	20499		5.8681	0	1	2846800			14441	9141	10513	10591	14061	14061					0.03589372568831095
FIASKGVKLV	10	Unmodified	_FIASKGVKLV_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	A375_MHC_IP_R1	1	354.9620361328125	3	354.562099	1060.66447	0.020552	7.2869E-06	0.015417	5.4662E-06	0.035969	1.2753E-05	354.5620510545119	47.454	0.91001	47.454	47.263	48.173	0					37	17	3	0	0	0	0.27246	1	16695	16695		35.612	14.022	1	17236000			14442	1529;4242;9835	10514	10592	14062	14062					0.13656069787793967
FIASKGVKLV	10	Unmodified	_FIASKGVKLV_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-SECPEP	A375_MHC_IP_R1	1	531.7394409179688	2	531.33951	1060.66447	-0.54859	-0.00029149	0.80466	0.00042755	0.25607	0.00013606	531.3397726935199	47.507	0.65726	47.507	47.263	47.92	0					29	12	3	0	0	0	0.157	1	16705	16705		79.427	41.453	1	7637900			14443	1529;4242;9835	10514	10592	14063	14063					0.13656069787793967
FIASKGVKLV	10	Unmodified	_FIASKGVKLV_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	A375_MHC_IP_R2	2	355.2962951660156	3	354.562099	1060.66447	-0.076411	-2.7092E-05	-0.23137	-8.2036E-05	-0.30778	-0.00010913	354.56200239038765	46.523	0.86468	47.288	47.058	47.923	0.76519					33	16	3	0	0	0	0.27246	2	17413	17413;17522		35.612	14.022	1	29149000			14444	1529;4242;9835	10514	10592	14064;14065	14064					0.13656069787793967
FIASKGVKLV	10	Unmodified	_FIASKGVKLV_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-SECPEP	A375_MHC_IP_R2	2	531.739013671875	2	531.33951	1060.66447	-0.50976	-0.00027086	-0.22521	-0.00011966	-0.73498	-0.00039052	531.3393034455117	46.523	0.56039	47.288	47.108	47.668	0.76519					23	10	3	0	0	0	0.157	1	17421	17421		79.427	43.3	1	11569000			14445	1529;4242;9835	10514	10592	14066	14066					0.13656069787793967
FICITVKFW	9	Unmodified	_FICITVKFW_					0	0	0			REV__nc|ENSG00000290798|Q9H1B4-5|NXF5	REV__nc|ENSG00000290798|Q9H1B4-5|NXF5	MULTI-SECPEP	A375_MHC_IP_R2	2	578.1998291015625	2	578.814813	1155.61507	-0.11752	-6.802E-05	0.84751	0.00049055	0.73	0.00042253	578.8150513033382	68.441	0.40478	69.176	68.968	69.373	0.73512					13	7	2	0	0	0	0.74169	1	25864	25864		16.942	13.346	1	1022400	+		14446	27560	10515	10593	14067	14067					0.043490385073482685
FIDASRLVY	9	Unmodified	_FIDASRLVY_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-3|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-SECPEP	A375_MHC_IP_R1	1	542.69482421875	2	542.295299	1082.57605	-0.58652	-0.00031807	-0.10441	-5.6622E-05	-0.69093	-0.00037469	542.295232975276	83.201	1.2168	83.201	82.772	83.989	0					42	23	2	0	0	0	0.4465	1	30383	30383		38.176	16.639	1	22188000			14447	1184;1400	10516	10594	14068	14068					0.038060294773458736
FIDASRLVY	9	Unmodified	_FIDASRLVY_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-3|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-SECPEP	A375_MHC_IP_R2	2	542.6962280273438	2	542.295299	1082.57605	-0.85315	-0.00046266	0.17421	9.4476E-05	-0.67894	-0.00036819	542.2954162673274	82.375	0.9098	83.118	82.839	83.749	0.74293					32	17	2	0	0	0	0.57806	1	31246	31246		30.703	10.25	1	19645000			14448	1184;1400	10516	10594	14069	14069					0.038060294773458736
FIDDANYSV	9	Unmodified	_FIDDANYSV_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1;ENST00000522311.1_1_8:103848756-103855898:-|nuORF	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	A375_MHC_IP_R1	1	522.6939086914062	2	522.237647	1042.46074	-0.51309	-0.00026796	-0.037891	-1.9788E-05	-0.55098	-0.00028774	522.2375530059799	75.589	1.4615	75.589	75.262	76.724	0					74	28	4	0	0	0	0.10411	4	27626	27626;27705;27745;27887		49.933	27.197	1	30592000			14449	6126	10517	10595	14070;14071;14072;14073	14070					-0.05879119444330172
FIDDANYSV	9	Unmodified	_FIDDANYSV_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1;ENST00000522311.1_1_8:103848756-103855898:-|nuORF	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	A375_MHC_IP_R2	2	523.2000122070312	2	522.237647	1042.46074	-0.62923	-0.00032861	-0.081703	-4.2669E-05	-0.71094	-0.00037128	522.2375434942163	75.109	2.236	75.847	75.365	77.601	0.73752					100	43	4	0	0	0	0.064406	4	28517	28517;28611;28630;28650		58.679	43.841	1	32920000			14450	6126	10517	10595	14074;14075;14076;14077	14074					-0.05879119444330172
FIDDVVSAV	9	Unmodified	_FIDDVVSAV_					0	0	0		ENST00000503240.5_1_5:148743537-148748214:+|nuORF;ENSG00000145882|ENST00000274569|PCYOX1L	ENST00000503240.5_1_5:148743537-148748214:+|nuORF	ENST00000503240.5_1_5:148743537-148748214:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	964.8992309570312	1	964.498589	963.491313	0.041136	3.9676E-05	0.87118	0.00084025	0.91231	0.00087992	964.4988927074502	101.12	0.41214	101.89	101.6	102.01	0.76428					11	7	2	0	0	0	0.07754	1	38360	38360		74.423	30.016	1	1332900			14451	5589	10518	10596	14078	14078					0.008106589407248066
FIDGAPSRTY	10	Unmodified	_FIDGAPSRTY_					0	0	0			REV__ENST00000343889.8_1_1:2411150-2434522:+|nuORF	REV__ENST00000343889.8_1_1:2411150-2434522:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	564.1561279296875	2	563.780013	1125.54547	-0.34522	-0.00019463	-3.0729	-0.0017324	-3.4181	-0.001927	563.7782461964167	62.261	1.0749	62.261	61.788	62.863	0					28	20	2	0	0	0	0.72086	1	22614	22614		18.146	1.2041	1	1853100	+		14452	19686	10519	10597	14079	14079					-0.012277489076950587
FIDGAVEDKH	10	Unmodified	_FIDGAVEDKH_					0	0	0			REV__nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	REV__nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	MULTI-MSMS	A375_MHC_IP_R2	2	565.708740234375	2	565.77747	1129.54039	-0.62196	-0.00035189	-0.28138	-0.0001592	-0.90334	-0.00051109	565.7774196818796	37.887	0.51388	38.661	38.432	38.946	0.77451					16	9	3	0	0	0	0.70651	1	13800	13800		9.3831	0.63772	1	5184900	+		14453	17241	10520	10598	14080	14080					-0.019200527703105763
FIDGNVESL	9	Unmodified	_FIDGNVESL_					0	0	0		nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;nc|ENSG00000119397|Q7Z7A1-2|CNTRL;nc|ENSG00000119397|Q7Z7A1-3|CNTRL	nc|ENSG00000119397|Q7Z7A1-5|CNTRL	nc|ENSG00000119397|Q7Z7A1-5|CNTRL	MULTI-SECPEP	A375_MHC_IP_R1	1	992.8671875	1	993.488753	992.481476	0.20364	0.00020231	0.39973	0.00039712	0.60336	0.00059943	993.4890699736263	73.462	0.50526	73.462	73.235	73.74	0					16	9	2	0	0	0	0.50702	1	26817	26817		32.305	0	1	3234600			14454	3588	10521	10599	14081	14081					-0.01506529064647566
FIDGNVESL	9	Unmodified	_FIDGNVESL_					0	0	0		nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;nc|ENSG00000119397|Q7Z7A1-2|CNTRL;nc|ENSG00000119397|Q7Z7A1-3|CNTRL	nc|ENSG00000119397|Q7Z7A1-5|CNTRL	nc|ENSG00000119397|Q7Z7A1-5|CNTRL	MULTI-MATCH	A375_MHC_IP_R2	2		1	993.488753	992.481476	-0.066215	-6.5784E-05	-0.28488	-0.00028303	-0.3511	-0.00034881	993.4884036452283	72.726	0.50816	73.462	73.226	73.734	0.7354	2.0651E-05	-0.0005057	NaN	32.305	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2437600			14455	3588	10521	10599							-0.01506529064647566
FIDGRLDL	8	Unmodified	_FIDGRLDL_					0	0	0		nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENSG00000119522|ENST00000394215|DENND1A;nc|ENSG00000119522|Q8TEH3-4|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;ENST00000479305.5_1_9:126200042-126224279:-|nuORF;ENST00000497135.5_1_9:126173862-126345492:-|nuORF;ENST00000491650.5_1_9:126219181-126371720:-|nuORF	nc|ENSG00000119522|Q8TEH3-5|DENND1A	nc|ENSG00000119522|Q8TEH3-5|DENND1A	MSMS	A375_MHC_IP_R2	2	474.70513916015625	2	474.761092	947.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.781	1	52.534	52.034	53.034	0.75225								0	0	0	0.16876	1	19497	19497		18.135	0	1				14456	3600	10522	10600	14082	14082					0.031777848974684275
FIDHDITSQLY	11	Unmodified	_FIDHDITSQLY_					0	0	0		ENST00000524307.5_1_8:124089445-124141439:+|nuORF;nc|ENSG00000156787|Q96DN5-3|TBC1D31;nc|ENSG00000156787|Q96DN5-2|TBC1D31;ENSG00000156787|ENST00000287380|TBC1D31	ENST00000524307.5_1_8:124089445-124141439:+|nuORF	ENST00000524307.5_1_8:124089445-124141439:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	675.7618408203125	2	676.330067	1350.64558	-0.67757	-0.00045826	0.30522	0.00020643	-0.37235	-0.00025183	676.3297669094633	81.313	0.55806	81.313	80.897	81.455	0					20	10	3	0	0	0	0.42835	1	29691	29691		43.772	29.866	1	2644600			14457	6208	10523	10601	14083	14083					-0.015715563645471775
FIDHDITSQLY	11	Unmodified	_FIDHDITSQLY_					0	0	0		ENST00000524307.5_1_8:124089445-124141439:+|nuORF;nc|ENSG00000156787|Q96DN5-3|TBC1D31;nc|ENSG00000156787|Q96DN5-2|TBC1D31;ENSG00000156787|ENST00000287380|TBC1D31	ENST00000524307.5_1_8:124089445-124141439:+|nuORF	ENST00000524307.5_1_8:124089445-124141439:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	676.239013671875	2	676.330067	1350.64558	-0.73893	-0.00049976	-0.49896	-0.00033746	-1.2379	-0.00083722	676.3296365553613	80.659	0.45968	81.404	81.163	81.622	0.74473					13	8	2	0	0	0	0.8011	1	30616	30616		43.772	10.327	1	3023600			14458	6208	10523	10601	14084	14084					-0.015715563645471775
FIDKEQLS	8	Unmodified	_FIDKEQLS_					0	0	0			REV__ENSG00000198874|ENST00000359626|TYW1	REV__ENSG00000198874|ENST00000359626|TYW1	MULTI-MSMS	A375_MHC_IP_R2	2	490.2079772949219	2	490.258382	978.502212	-0.34926	-0.00017123	-0.21757	-0.00010667	-0.56683	-0.00027789	490.2582283121993	43.786	0.96046	44.555	44.177	45.138	0.7691					40	18	3	0	0	0	0.73111	1	16481	16481		25.399	2.2509	1	14100000	+		14459	22436	10524	10602	14085	14085					0.012100613150096251
FIDPEQIQV	9	Unmodified	_FIDPEQIQV_					0	0	0		nc|ENSG00000143127|O75578-3|ITGA10;ENSG00000143127|ENST00000369304|ITGA10	nc|ENSG00000143127|O75578-3|ITGA10	nc|ENSG00000143127|O75578-3|ITGA10	MULTI-MSMS	A375_MHC_IP_R1	1	544.6561889648438	2	544.784764	1087.55498	-0.51592	-0.00028106	0.15141	8.2487E-05	-0.36451	-0.00019858	544.7848581767412	103.06	0.8149	103.06	102.71	103.52	0					29	15	3	0	0	0	0.050868	2	37881	37881;37939		63.961	63.961	1	2167000			14460	5347	10525	10603	14086;14087	14086					0.014700193778026005
FIDPEQIQV	9	Unmodified	_FIDPEQIQV_					0	0	0		nc|ENSG00000143127|O75578-3|ITGA10;ENSG00000143127|ENST00000369304|ITGA10	nc|ENSG00000143127|O75578-3|ITGA10	nc|ENSG00000143127|O75578-3|ITGA10	MULTI-SECPEP	A375_MHC_IP_R2	2	545.1845703125	2	544.784764	1087.55498	-0.80503	-0.00043857	0.38127	0.00020771	-0.42376	-0.00023086	544.7848935630942	102.39	0.61032	103.16	102.87	103.48	0.76428					25	11	3	0	0	0	0.38134	1	38803	38803		49.554	49.554	1	1761300			14461	5347	10525	10603	14088	14088					0.014700193778026005
FIDPKKIKV	9	Unmodified	_FIDPKKIKV_					0	0	0		ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;ENST00000562140.2_1_16:70398455-70404584:+|nuORF;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B;ENST00000567012.5_1_16:70398922-70400166:+|nuORF	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	363.63397216796875	3	363.233982	1086.68012	0.35505	0.00012897	-0.44487	-0.00016159	-0.089818	-3.2625E-05	363.2337824344511	42.627	0.80975	42.627	42.233	43.043	0					40	15	4	0	0	0	0.062639	2	14749	14749;14828		59.368	40.647	1	11539000			14462	6238	10526	10604	14089;14090	14089					0.1402435630486707
FIDPKKIKV	9	Unmodified	_FIDPKKIKV_					0	0	0		ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;ENST00000562140.2_1_16:70398455-70404584:+|nuORF;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B;ENST00000567012.5_1_16:70398922-70400166:+|nuORF	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	363.63372802734375	3	363.233982	1086.68012	-0.12833	-4.6612E-05	-0.38408	-0.00013951	-0.5124	-0.00018612	363.2337783291419	41.743	0.61249	42.517	42.198	42.811	0.77451					34	11	4	0	0	0	0.095851	2	15465	15465;15502		51.415	36.167	1	10466000			14463	6238	10526	10604	14091;14092	14091					0.1402435630486707
FIDVDDERWHY	11	Unmodified	_FIDVDDERWHY_					0	0	0		ENSG00000128708|ENST00000264108|HAT1;MRPS15-HAT1|1|fusion;ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1	ENSG00000128708|ENST00000264108|HAT1	ENSG00000128708|ENST00000264108|HAT1	MULTI-MSMS	A375_MHC_IP_R1	1	499.6272888183594	3	498.893124	1493.65754	-0.38805	-0.00019359	0.11947	5.9601E-05	-0.26858	-0.00013399	498.8930735653299	73.454	0.60772	73.454	73.235	73.843	0					29	11	4	0	0	0	0.5363	1	26764	26764		28.271	21.647	1	3007300			14464	4160	10527	10605	14093	14093					-0.06953939621394056
FIDVDDERWHY	11	Unmodified	_FIDVDDERWHY_					0	0	0		ENSG00000128708|ENST00000264108|HAT1;MRPS15-HAT1|1|fusion;ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1	ENSG00000128708|ENST00000264108|HAT1	ENSG00000128708|ENST00000264108|HAT1	MULTI-SECPEP	A375_MHC_IP_R2	2	499.2929382324219	3	498.893124	1493.65754	-0.57203	-0.00028538	0.016659	8.3112E-06	-0.55537	-0.00027707	498.8930946203898	72.862	0.55978	73.598	73.379	73.938	0.7354					23	10	3	0	0	0	0.94463	1	27689	27689		19.615	12.581	1	2980300			14465	4160	10527	10605	14094	14094					-0.06953939621394056
FIDWMESFL	9	Unmodified	_FIDWMESFL_					0	0	0			REV__ENSG00000135953|ENST00000258436|MFSD9	REV__ENSG00000135953|ENST00000258436|MFSD9	MSMS	A375_MHC_IP_R2	2	594.245361328125	2	594.275718	1186.53688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.053	1	98.813	98.313	99.313	0.75977								0	0	0	0.15486	1	37206	37206		9.3474	0.75416	1		+		14466	18902	10528	10606	14095	14095					-0.04892438868546378
FIEEYVTAY	9	Unmodified	_FIEEYVTAY_					0	0	0		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1;nc|ENSG00000143379|Q15047-2|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MSMS	A375_MHC_IP_R2	2	567.7117919921875	2	567.771322	1133.52809	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.737	1	99.496	98.996	99.996	0.75977								0	0	0	0.13805	1	37454	37454		30.225	16.717	1				14467	5379	10529	10607	14096	14096					-0.03333089233387909
FIEGTVHDIK	10	Unmodified	_FIEGTVHDIK_					0	0	0			REV__ENSG00000079112|ENST00000027335|CDH17	REV__ENSG00000079112|ENST00000027335|CDH17	MULTI-SECPEP	A375_MHC_IP_R2	2	580.2111206054688	2	579.811313	1157.60807	-0.26154	-0.00015164	0.10499	6.0876E-05	-0.15655	-9.0767E-05	579.8114550477214	75.823	0.45792	76.564	76.334	76.792	0.74052					11	8	2	0	0	0	0.85226	1	28816	28816		20.454	20.454	1	1704200	+		14468	16722	10530	10608	14097	14097					0.0355739716046628
FIENNRLY	8	Unmodified	_FIENNRLY_					0	0	0		ENSG00000274391|ENST00000618007|TPTE;nc|ENSG00000274391|P56180-4|TPTE;nc|ENSG00000274391|P56180-3|TPTE;nc|ENSG00000274391|P56180-2|TPTE;TPTE|p.S501F|1|0.14|ENSG00000274391|chr21:10603614-10603614|C/T|missense_variant	ENSG00000274391|ENST00000618007|TPTE	ENSG00000274391|ENST00000618007|TPTE	MULTI-SECPEP	A375_MHC_IP_R1	1	535.2183837890625	2	534.777274	1067.53999	-0.69941	-0.00037403	0.46148	0.00024679	-0.23793	-0.00012724	534.7775197962078	79.848	0.76817	79.848	79.47	80.238	0					36	14	4	0	0	0	0.91495	1	29160	29160		18.135	18.135	1	16775000			14469	10002	10531	10609	14098	14098					0.00892572300494976
FIFEKKLAQA	10	Unmodified	_FIFEKKLAQA_					0	0	0		ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-2|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	MULTI-SECPEP	A375_MHC_IP_R2	2	399.3007507324219	3	398.900891	1193.68084	-0.51567	-0.0002057	0.59872	0.00023883	0.08305	3.3129E-05	398.900993983705	52.522	0.50712	53.274	53.032	53.54	0.75225					18	9	3	0	0	0	0.68214	1	19827	19827		37.771	17.19	1	3441400			14470	8043	10532	10610	14099	14099					0.09175150953888078
FIFEKKLAQA	10	Unmodified	_FIFEKKLAQA_					0	0	0		ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-2|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	MULTI-SECPEP	A375_MHC_IP_R2	2	598.2470092773438	2	597.847699	1193.68084	-0.9999	-0.00059779	0.52304	0.0003127	-0.47686	-0.00028509	597.8481603974429	52.534	0.40536	53.286	53.083	53.489	0.75225					13	7	3	0	0	0	0.79938	1	19850	19850		16.566	0	1	2696600			14471	8043	10532	10610	14100	14100					0.09175150953888078
FIFFATFIL	9	Unmodified	_FIFFATFIL_					0	0	0			REV__ENSG00000162695|ENST00000357650|SLC30A7	REV__ENSG00000162695|ENST00000357650|SLC30A7	MSMS	A375_MHC_IP_R2	2	560.2155151367188	2	559.817879	1117.6212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.51	1	131.69	131.19	132.19	0.18953								0	0	0	0.11268	1	51730	51730		42.095	9.7891	1		+		14472	20294	10533	10611	14101	14101					0.06709880010498637
FIFLFFMYFRW	11	Unmodified	_FIFLFFMYFRW_					0	0	0		ENST00000510312.6_1_5:73199984-73200204:+|nuORF	ENST00000510312.6_1_5:73199984-73200204:+|nuORF	ENST00000510312.6_1_5:73199984-73200204:+|nuORF	MSMS	A375_MHC_IP_R1	1	539.6947021484375	3	539.608943	1615.805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.624	1	88.624	88.124	89.124	0								0	0	0	0.16301	1	32540	32540		3.0723	2.9774	1				14473	12897	10534	10612	14102	14102					0.02172905449697282
FIFSDTHEL	9	Unmodified	_FIFSDTHEL_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	A375_MHC_IP_R1	1	555.169189453125	2	554.769114	1107.52368	-0.75617	-0.0004195	0.03811	2.1142E-05	-0.71806	-0.00039836	554.7690800352907	84.878	1.1225	84.878	84.442	85.565	0					31	21	2	0	0	0	0.12592	1	31067	31067		46.021	21.347	1	11215000			14474	2388	10535	10613	14103	14103					-0.02578553656303484
FIFSDTHEL	9	Unmodified	_FIFSDTHEL_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	A375_MHC_IP_R2	2	555.1688232421875	2	554.769114	1107.52368	-0.69939	-0.000388	0.11443	6.3482E-05	-0.58496	-0.00032452	554.7691807733075	84.013	0.96793	84.753	84.458	85.426	0.73962					30	18	2	0	0	0	0.067501	1	31931	31931		57.471	32.072	1	8354700			14475	2388	10535	10613	14104	14104					-0.02578553656303484
FIFYKFKRKRP	11	Unmodified	_FIFYKFKRKRP_					0	0	0		SORCS2|p.L1099F|1|0.56|ENSG00000184985|chr4:7734358-7734358|C/T|missense_variant	SORCS2|p.L1099F|1|0.56|ENSG00000184985|chr4:7734358-7734358|C/T|missense_variant	SORCS2|p.L1099F|1|0.56|ENSG00000184985|chr4:7734358-7734358|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	510.6753234863281	3	510.641634	1528.90307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.03	1	101.03	100.53	101.53	0								0	0	0	0.16331	1	37133	37133		0.50596	0	1				14476	29219	10536	10614	14105	14105					0.15977850089893764
FIGIQLLLLV	10	Unmodified	_FIGIQLLLLV_					0	0	0		nc|ENSG00000164300|Q86VE9-3|SERINC5;nc|ENSG00000164300|Q86VE9-2|SERINC5;nc|ENSG00000164300|Q86VE9|SERINC5;ENSG00000164300|ENST00000507668|SERINC5	nc|ENSG00000164300|Q86VE9-3|SERINC5	nc|ENSG00000164300|Q86VE9-3|SERINC5	MSMS	A375_MHC_IP_R1	1	565.0775756835938	2	564.873185	1127.73182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.295	1	98.295	97.795	98.795	0								0	0	0	0.1552	1	36115	36115		3.9444	2.1002	1				14477	6816	10537	10615	14106	14106					0.17306099998745594
FIGIWAAGYI	10	Unmodified	_FIGIWAAGYI_					0	0	0			REV__ENSG00000114638|ENST00000264234|UPK1B	REV__ENSG00000114638|ENST00000264234|UPK1B	MULTI-MSMS	A375_MHC_IP_R1	1	555.69921875	2	555.80276	1109.59097	-0.3869	-0.00021504	0.69785	0.00038787	0.31095	0.00017283	556.3053564786155	110.26	0.60811	110.26	109.93	110.54	0					25	11	3	0	0	0	0.63654	1	40427	40427		18.135	1.0221	1	3501700	+		14478	17832	10538	10616	14107	14107					0.04055521345321722
FIGNLNTLVV	10	Unmodified	_FIGNLNTLVV_					0	0	0		nc|ENSG00000092199|P07910|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000092199|ENST00000553300|HNRNPC;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000277058|ENST00000617807|HNRNPCL3;HNRNPCL1|p.E212Dfs*7|1|0.23|ENSG00000179172|chr1:12847653-12847654|CC/-|frameshift_variant;nc|ENSG00000092199|P07910-3|HNRNPC	nc|ENSG00000092199|P07910|HNRNPC	nc|ENSG00000092199|P07910|HNRNPC	MULTI-SECPEP	A375_MHC_IP_R2	2	545.7188110351562	2	545.318774	1088.623	-0.65474	-0.00035704	0.21039	0.00011473	-0.44435	-0.00024231	545.3188436505387	86.426	0.51192	87.159	86.845	87.357	0.733					15	9	2	0	0	0	0.87043	1	32885	32885		20.415	3.3016	1	1246400			14479	1998	10539	10617	14108	14108					0.08222889028479585
FIGSGHKEVR	10	Unmodified	_FIGSGHKEVR_					0	0	0		ENST00000350878.8_1_2:102508034-102508175:+|nuORF	ENST00000350878.8_1_2:102508034-102508175:+|nuORF	ENST00000350878.8_1_2:102508034-102508175:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	377.44207763671875	3	377.208607	1128.60399	0.40804	0.00015392	0.45189	0.00017046	0.85993	0.00032437	377.20867070830394	38.618	1.4242	38.618	38.168	39.592	0					34	27	2	0	0	0	0.70027	1	13280	13280		12.175	12.175	1	14660000			14480	10924	10540	10618	14109	14109					0.04483352457418732
FIGSGIITGV	10	Unmodified	_FIGSGIITGV_					0	0	0			REV__ENSG00000021488|ENST00000023064|SLC7A9	REV__ENSG00000021488|ENST00000023064|SLC7A9	MULTI-SECPEP	A375_MHC_IP_R1	1	482.678955078125	2	482.279118	962.543683	-0.57876	-0.00027913	0.32012	0.00015439	-0.25865	-0.00012474	482.27928967546393	66.639	1.3275	66.639	66.224	67.552	0					52	25	3	0	0	0	0.11184	1	24144	24144		78.149	12.676	1	16544000	+		14481	16267	10541	10619	14110	14110					0.06091242074330694
FIGSGIITGV	10	Unmodified	_FIGSGIITGV_					0	0	0			REV__ENSG00000021488|ENST00000023064|SLC7A9	REV__ENSG00000021488|ENST00000023064|SLC7A9	MULTI-MSMS	A375_MHC_IP_R2	2	482.67877197265625	2	482.279118	962.543683	-0.75919	-0.00036614	0.31711	0.00015294	-0.44208	-0.0002132	482.279260510362	65.679	1.4275	66.417	65.968	67.395	0.73812					60	27	4	0	0	0	0.0095045	1	24895	24895		128.37	3.3276	1	17148000	+		14482	16267	10541	10619	14111	14111					0.06091242074330694
FIHECVPVSNN	11	Unmodified	_FIHECVPVSNN_					0	0	0			REV__nc|ENSG00000203710|P17927|CR1	REV__nc|ENSG00000203710|P17927|CR1	MSMS	A375_MHC_IP_R1	1	629.7973022460938	2	629.79788	1257.58121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.844	1	96.844	96.344	97.344	0								0	0	0	0.16191	1	35587	35587		8.7454	2.0222	1		+		14483	22466	10542	10620	14112	14112					-0.03728034722348639
FIHEVAKGVMI	11	Unmodified	_FIHEVAKGVMI_					0	0	0			REV__ENSG00000204271|ENST00000374919|SPIN3	REV__ENSG00000204271|ENST00000374919|SPIN3	MULTI-MSMS	A375_MHC_IP_R1	1	622.7460327148438	2	622.347009	1242.67946	-0.68096	-0.0004238	1.0654	0.00066304	0.38442	0.00023924	622.3469814514115	130.08	2.6932	130.08	128.68	131.38	0					120	52	4	0	0	0	0.731	1	50255	50255		10.074	1.3285	1	102680000	+		14484	22503	10543	10621	14113	14113					0.06783193593491887
FIHKDYTY	8	Unmodified	_FIHKDYTY_					0	0	0			REV__nc|ENSG00000115459|Q96FG2-6|ELMOD3	REV__nc|ENSG00000115459|Q96FG2-6|ELMOD3	MSMS	A375_MHC_IP_R2	2	544.1668090820312	2	543.766374	1085.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.2	1	107.96	107.46	108.46	0.75436								0	0	0	0.16876	1	40504	40504		15.768	3.2367	1		+		14485	27188	10544	10622	14114	14114					-0.021142324480933894
FIHLVLQPSL	10	Unmodified	_FIHLVLQPSL_					0	0	0		ENSG00000080007|ENST00000370336|DDX43	ENSG00000080007|ENST00000370336|DDX43	ENSG00000080007|ENST00000370336|DDX43	MULTI-SECPEP	A375_MHC_IP_R2	2	388.93634033203125	3	389.569253	1165.68593	-0.33332	-0.00012985	0.42788	0.00016669	0.094559	3.6837E-05	389.5693360795351	39.131	0.56121	39.905	39.607	40.169	0.77451					26	10	4	0	0	0	0.93194	1	14330	14330		3.0723	1.1659	1	5297000			14486	1707	10545	10623	14115	14115					0.10971454816535697
FIHNRFSI	8	Unmodified	_FIHNRFSI_					0	0	0		ENST00000490716.5_1_13:37596969-37597095:-|nuORF	ENST00000490716.5_1_13:37596969-37597095:-|nuORF	ENST00000490716.5_1_13:37596969-37597095:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	517.660400390625	2	517.282526	1032.5505	-0.65418	-0.00033839	-0.064273	-3.3247E-05	-0.71845	-0.00037164	517.7843008495267	90.077	0.7079	90.077	89.78	90.488	0					19	13	2	0	0	0	0.86765	1	33242	33242		18.135	0	1	1629300			14487	12648	10546	10624	14116	14116					0.03552599745557927
FIHYISQNYY	10	Unmodified	_FIHYISQNYY_					0	0	0			REV__tr|U7T3P7|U7T3P7_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00486PE=4SV=1	REV__tr|U7T3P7|U7T3P7_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00486PE=4SV=1	MSMS	A375_MHC_IP_R1	1	674.1627197265625	2	674.322045	1346.62954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.215	1	98.215	97.715	98.715	0								0	0	0	0.15435	1	36085	36085		6.7232	1.4263	1		+		14488	28783	10547	10625	14117	14117					-0.029912178108133958
FIIANIPLP	9	Unmodified	_FIIANIPLP_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000018625|ENST00000361216|ATP1A2	nc|ENSG00000163399|P05023-3|ATP1A1;ENST00000472488.5_1_1:160085570-160106822:+|nuORF	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	A375_MHC_IP_R2	2	499.71807861328125	2	499.307678	996.600803	-0.51863	-0.00025896	0.38137	0.00019042	-0.13726	-6.8537E-05	499.30778074236576	131.88	0.40329	132.07	131.85	132.25	0.18953					16	7	3	0	0	0	0.1209	2	51931	51831;51931		46.921	14.804	1	3940500			14489	6659;1048	10548	10626	14118;14119	14119					0.10236709350692763
FIIDDKGIL	9	Unmodified	_FIIDDKGIL_					0	0	0		ENSG00000123131|ENST00000379341|PRDX4;PRDX1|p.T183Nfs*5|1|0.15|ENSG00000117450|chr1:45511381-45511382|-/T|frameshift_variant;ENSG00000117450|ENST00000319248|PRDX1;PRDX1|p.R140W|1|0.32|ENSG00000117450|chr1:45514603-45514603|G/A|missense_variant	ENSG00000123131|ENST00000379341|PRDX4	ENSG00000123131|ENST00000379341|PRDX4	MULTI-MSMS	A375_MHC_IP_R1	1	517.6996459960938	2	517.30005	1032.58555	-0.47601	-0.00024624	-0.077928	-4.0312E-05	-0.55394	-0.00028655	517.2998726540402	101.97	1.8764	101.97	101.65	103.52	0					88	36	4	0	0	0	0.066859	1	37422	37422		57.722	3.8892	1	23469000			14490	3827	10549	10627	14120	14120					0.07055797762859584
FIIDDKGIL	9	Unmodified	_FIIDDKGIL_					0	0	0		ENSG00000123131|ENST00000379341|PRDX4;PRDX1|p.T183Nfs*5|1|0.15|ENSG00000117450|chr1:45511381-45511382|-/T|frameshift_variant;ENSG00000117450|ENST00000319248|PRDX1;PRDX1|p.R140W|1|0.32|ENSG00000117450|chr1:45514603-45514603|G/A|missense_variant	ENSG00000123131|ENST00000379341|PRDX4	ENSG00000123131|ENST00000379341|PRDX4	MULTI-MSMS	A375_MHC_IP_R2	2	517.7208862304688	2	517.30005	1032.58555	-0.63393	-0.00032793	0.38235	0.00019779	-0.25158	-0.00013014	517.3000790591436	101.17	1.7815	101.93	101.65	103.43	0.76428					83	34	4	0	0	0	0.13845	2	38497	38497;38523		43.772	3.8151	1	36814000			14491	3827	10549	10627	14121;14122	14121					0.07055797762859584
FIIDGKGVL	9	Unmodified	_FIIDGKGVL_					0	0	0		ENST00000498785.1_1_19:12910655-12911052:-|nuORF;ENST00000466174.5_1_19:12907897-12910877:-|nuORF;ENSG00000167815|ENST00000301522|PRDX2	ENST00000498785.1_1_19:12910655-12911052:-|nuORF	ENST00000498785.1_1_19:12910655-12911052:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	481.6896667480469	2	481.289485	960.564418	-0.47176	-0.00022706	0.26217	0.00012618	-0.2096	-0.00010088	481.2895338622666	91.21	0.55584	91.945	91.566	92.122	0.7345					17	10	2	0	0	0	0.22013	1	34699	34699		36.506	0.462	1	2436900			14492	7226	10550	10628	14123	14123					0.08255832453994572
FIIDGKGVL	9	Unmodified	_FIIDGKGVL_					0	0	0		ENST00000498785.1_1_19:12910655-12911052:-|nuORF;ENST00000466174.5_1_19:12907897-12910877:-|nuORF;ENSG00000167815|ENST00000301522|PRDX2	ENST00000498785.1_1_19:12910655-12911052:-|nuORF	ENST00000498785.1_1_19:12910655-12911052:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	481.289485	960.564418	-0.30209	-0.00014539	0.24537	0.0001181	-0.056713	-2.7296E-05	481.2895829484179	91.931	0.7579	91.931	91.706	92.463	0	-0.0069061	-7.2901E-06	NaN	36.506	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1996700			14493	7226	10550	10628							0.08255832453994572
FIIMDTTNVF	10	Unmodified	_FIIMDTTNVF_					0	0	0			REV__TG|p.M203I|1|0.39|ENSG00000042832|chr8:132873192-132873192|G/A|missense_variant	REV__TG|p.M203I|1|0.39|ENSG00000042832|chr8:132873192-132873192|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	400.99932861328125	3	400.870492	1199.58965	-0.55727	-0.00022339	4.0848	0.0016375	3.5275	0.0014141	400.8717206436048	23.457	0.30649	23.457	23.278	23.584	0					7	5	2	0	0	0	0.87043	1	6498	6498		9.7643	0	1	1981000	+		14494	28101	10551	10629	14124	14124					-0.0021648080576142092
FIINATALA	9	Unmodified	_FIINATALA_					0	0	0		tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	467.6737060546875	2	467.273835	932.533118	-0.52451	-0.00024509	0.34003	0.00015889	-0.18448	-8.6203E-05	467.27385717088754	68.542	0.70885	69.277	68.968	69.677	0.73512					27	13	3	0	0	0	0.65246	1	25971	25971		15.847	1.0089	1	3203000			14495	29629	10552	10630	14125	14125					0.06415259419884478
FIINDSYTN	9	Unmodified	_FIINDSYTN_					0	0	0			REV__ENSG00000183090|ENST00000329798|FREM3	REV__ENSG00000183090|ENST00000329798|FREM3	MULTI-MSMS	A375_MHC_IP_R1	1	544.2110595703125	2	543.758746	1085.50294	-0.64518	-0.00035082	-0.69361	-0.00037716	-1.3388	-0.00072798	543.7585154818321	58.551	0.60884	58.551	58.177	58.786	0					22	11	3	0	0	0	0.51106	1	21078	21078		19.257	3.4098	1	3820500	+		14496	21735	10553	10631	14126	14126					-0.03639144035946629
FIITRHKM	8	Unmodified	_FIITRHKM_					0	0	0		ST6GALNAC5|p.M203I|1|0.21|ENSG00000117069|chr1:77044551-77044551|G/A|missense_variant	ST6GALNAC5|p.M203I|1|0.21|ENSG00000117069|chr1:77044551-77044551|G/A|missense_variant	ST6GALNAC5|p.M203I|1|0.21|ENSG00000117069|chr1:77044551-77044551|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	523.7031860351562	2	523.302404	1044.59026	-0.060499	-3.1659E-05	1.5897	0.00083188	1.5292	0.00080022	523.3030380619673	126.84	0.86107	126.84	126.36	127.22	0					34	16	3	0	0	0	0.76248	1	48449	48449		16.942	4.4107	1	30662000			14497	29254	10554	10632	14127	14127					0.06974403424624143
FIITRHKM	8	Unmodified	_FIITRHKM_					0	0	0		ST6GALNAC5|p.M203I|1|0.21|ENSG00000117069|chr1:77044551-77044551|G/A|missense_variant	ST6GALNAC5|p.M203I|1|0.21|ENSG00000117069|chr1:77044551-77044551|G/A|missense_variant	ST6GALNAC5|p.M203I|1|0.21|ENSG00000117069|chr1:77044551-77044551|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	523.302404	1044.59026	-0.060499	-3.1659E-05	1.5897	0.00083188	1.5292	0.00080022	523.3030380619673	126.84	0.86107	126.84	126.36	127.22	0	0.017321	-0.00021545	NaN	16.942	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30662000			14498	29254	10554	10632							0.06974403424624143
FIIYKGDIYTY	11	Unmodified	_FIIYKGDIYTY_					0	0	0		SLC27A6|p.E76K|1|0.43|ENSG00000113396|chr5:128966363-128966363|G/A|missense_variant	SLC27A6|p.E76K|1|0.43|ENSG00000113396|chr5:128966363-128966363|G/A|missense_variant	SLC27A6|p.E76K|1|0.43|ENSG00000113396|chr5:128966363-128966363|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	698.3609008789062	2	698.363379	1394.7122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.566	1	70.3	69.8	70.8	0.73421								0	0	0	0.16297	1	26362	26362		3.2813	0	1				14499	29178	10555	10633	14128	14128					0.030636791973392974
FIKEKFKINYR	11	Unmodified	_FIKEKFKINYR_					0	0	0			REV__tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	REV__tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	MSMS	A375_MHC_IP_R1	1	495.85882568359375	3	495.9574	1484.85037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.72	1	146.72	146.22	147.22	0								0	0	0	0.16353	1	56123	56123		0.094841	0	1		+		14500	28228	10556	10634	14129	14129					0.12733847236472684
FIKEKFKINYR	11	Unmodified	_FIKEKFKINYR_					0	0	0			REV__tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	REV__tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	MSMS	A375_MHC_IP_R2	2	495.8590393066406	3	495.9574	1484.85037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.75	1	146.77	146.27	147.27	0.019913								0	0	0	0.16353	1	57139	57139		0.094841	0	1		+		14501	28228	10556	10634	14130	14130					0.12733847236472684
FIKGKPRTIS	10	Unmodified	_FIKGKPRTIS_					0	0	0		ENST00000359242.7_2_1:86847938-86847992:-|nuORF	ENST00000359242.7_2_1:86847938-86847992:-|nuORF	ENST00000359242.7_2_1:86847938-86847992:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	383.2923889160156	3	382.904636	1145.69208	-0.3154	-0.00012077	0.25239	9.6642E-05	-0.063007	-2.4125E-05	382.9047272745478	37.968	0.5136	38.742	38.534	39.047	0.77451					19	9	3	0	0	0	0.7154	1	13882	13882		5.4027	0.35519	1	4204300			14502	11011	10557	10635	14131	14131					0.1250597304801886
FIKHGDNQQF	10	Unmodified	_FIKHGDNQQF_					0	0	0		ENST00000483257.1_1_X:70326085-70326406:-|nuORF;ENSG00000204165|ENST00000374251|CXorf65	ENST00000483257.1_1_X:70326085-70326406:-|nuORF	ENST00000483257.1_1_X:70326085-70326406:-|nuORF	MSMS	A375_MHC_IP_R2	2	617.2205200195312	2	617.304187	1232.59382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.42	1	127.69	127.19	128.19	0.26593								0	0	0	0.14601	1	49979	49979		25.399	3.6527	1				14503	9410	10558	10636	14132	14132					-0.013172552678270222
FIKKHRRRYS	10	Unmodified	_FIKKHRRRYS_					0	0	0		ENSG00000164129|ENST00000338566|NPY5R	ENSG00000164129|ENST00000338566|NPY5R	ENSG00000164129|ENST00000338566|NPY5R	MSMS	A375_MHC_IP_R2	2	695.8124389648438	2	695.912562	1389.81057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.03	1	145.05	144.55	145.55	0.021408								0	0	0	0.15628	1	56632	56632		0.45834	0.10771	1				14504	6787	10559	10637	14133	14133					0.1312576507641552
FIKKHRRRYSK	11	Unmodified	_FIKKHRRRYSK_					0	0	0		ENSG00000164129|ENST00000338566|NPY5R	ENSG00000164129|ENST00000338566|NPY5R	ENSG00000164129|ENST00000338566|NPY5R	MULTI-MSMS	A375_MHC_IP_R1	1	507.3775939941406	3	506.975788	1517.90553	-0.68473	-0.00034714	2.9264	0.0014836	2.2417	0.0011365	506.9780166660002	136.36	0.31036	136.36	136.25	136.56	0					11	5	3	0	0	0	0.73881	1	52570	52570		0.50596	0.051438	1	1307200			14505	6787	10560	10638	14134	14134					0.16729698547601402
FIKKIHIFYRK	11	Unmodified	_FIKKIHIFYRK_					0	0	0			REV__ENSG00000198169|ENST00000292562|ZNF251	REV__ENSG00000198169|ENST00000292562|ZNF251	MULTI-SECPEP	A375_MHC_IP_R2	2	373.64111328125	4	373.984233	1491.90782	0.49701	0.00018588	-0.52639	-0.00019686	-0.029377	-1.0987E-05	373.9839964086099	46.437	0.6607	47.203	46.906	47.567	0.76518					16	12	2	0	0	0	0.99916	1	17506	17506		2.4348	1.22	1	899160	+		14506	22349	10561	10639	14135	14135					0.1815473423266667
FIKKIHIFYRK	11	Unmodified	_FIKKIHIFYRK_					0	0	0			REV__ENSG00000198169|ENST00000292562|ZNF251	REV__ENSG00000198169|ENST00000292562|ZNF251	MULTI-MATCH	A375_MHC_IP_R1	1		4	373.984233	1491.90782	0.33697	0.00012602	-0.29848	-0.00011163	0.038492	1.4395E-05	373.98408969603	47.429	0.4601	47.429	47.107	47.567	0	0.11332	0.00019088	NaN	2.4348	21	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1844000	+		14507	22349	10561	10639							0.1815473423266667
FIKLHLYW	8	Unmodified	_FIKLHLYW_					0	0	0		ENST00000400109.2_1_13:19879246-19879522:-|nuORF	ENST00000400109.2_1_13:19879246-19879522:-|nuORF	ENST00000400109.2_1_13:19879246-19879522:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	560.7220458984375	2	560.32112	1118.62769	-0.45131	-0.00025288	0.79098	0.0004432	0.33968	0.00019033	560.3217264470335	128.66	0.45663	128.66	128.43	128.89	0					15	8	2	0	0	0	0.972	1	49527	49527		5.7604	5.7604	1	12853000			14508	11550	10562	10640	14136	14136					0.07311817961885936
FIKLPNDV	8	Unmodified	_FIKLPNDV_					0	0	0			REV__DNAJC17|p.S245F|1|0.38|ENSG00000104129|chr15:40773785-40773785|G/A|missense_variant	REV__DNAJC17|p.S245F|1|0.38|ENSG00000104129|chr15:40773785-40773785|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	473.6606140136719	2	473.273835	944.533118	-0.8667	-0.00041019	2.0761	0.00098255	1.2094	0.00057236	473.27382268076985	57.644	0.45824	58.393	58.17	58.629	0.74894					14	8	2	0	0	0	0.92636	1	21746	21746		16.942	0	1	1251500	+		14509	16022	10563	10641	14137	14137					0.05863259419891165
FIKTLLRKV	9	Unmodified	_FIKTLLRKV_					0	0	0		ENST00000274376.10_1_5:86658440-86658479:+|nuORF	ENST00000274376.10_1_5:86658440-86658479:+|nuORF	ENST00000274376.10_1_5:86658440-86658479:+|nuORF	MSMS	A375_MHC_IP_R1	1	559.510009765625	2	559.376426	1116.7383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.743	1	96.743	96.243	97.243	0								0	0	0	0.15486	1	35551	35551		2.3027	0.4585	1				14510	10397	10564	10642	14138	14138					0.18460037950126207
FIKVLNKVC	9	Unmodified	_FIKVLNKVC_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MSMS	A375_MHC_IP_R2	2	532.2167358398438	2	532.320263	1062.62597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.64	1	124.97	124.47	125.47	0.32969								0	0	0	0.15486	1	48271	48271		3.9444	0.66309	1		+		14511	22397	10565	10643	14139	14139					0.09716440881607014
FILAFLYN	8	Unmodified	_FILAFLYN_					0	0	0		nc|ENSG00000173662|Q7RTX1-2|TAS1R1;ENSG00000173662|ENST00000333172|TAS1R1	nc|ENSG00000173662|Q7RTX1-2|TAS1R1	nc|ENSG00000173662|Q7RTX1-2|TAS1R1	MULTI-MSMS	A375_MHC_IP_R1	1	501.2176513671875	2	500.778754	999.542954	-0.3581	-0.00017933	-0.38363	-0.00019212	-0.74173	-0.00037144	500.7782110215213	98.613	0.56049	98.613	98.455	99.015	0					15	10	2	0	0	0	0.75322	1	36284	36284		19.439	0	1	395340			14512	7818	10566	10644	14140	14140					0.04316447425264869
FILFLFFFFLL	11	Unmodified	_FILFLFFFFLL_					0	0	0		L1MB7_dup9932|chr8:58560717-58562310:+|1.3153910631107617|0.0447379494579893|4.88|444.0|92|2|anti-sense	L1MB7_dup9932|chr8:58560717-58562310:+|1.3153910631107617|0.0447379494579893|4.88|444.0|92|2|anti-sense	L1MB7_dup9932|chr8:58560717-58562310:+|1.3153910631107617|0.0447379494579893|4.88|444.0|92|2|anti-sense	MULTI-MSMS	A375_MHC_IP_R1	1	367.49664306640625	4	367.467618	1465.84137	0.36702	0.00013487	-0.75804	-0.00027856	-0.39102	-0.00014369	367.7180654539962	71.082	0.30863	71.082	70.85	71.159	0					10	5	3	0	0	0	0.73612	1	25767	25767		3.0723	1.6171	1	1758600			14513	14259	10567	10645	14141	14141					0.12708105618071386
FILFLFFFFLL	11	Unmodified	_FILFLFFFFLL_					0	0	0		L1MB7_dup9932|chr8:58560717-58562310:+|1.3153910631107617|0.0447379494579893|4.88|444.0|92|2|anti-sense	L1MB7_dup9932|chr8:58560717-58562310:+|1.3153910631107617|0.0447379494579893|4.88|444.0|92|2|anti-sense	L1MB7_dup9932|chr8:58560717-58562310:+|1.3153910631107617|0.0447379494579893|4.88|444.0|92|2|anti-sense	MULTI-MATCH	A375_MHC_IP_R2	2		4	367.467618	1465.84137	0.23179	8.5174E-05	-0.042104	-1.5472E-05	0.18968	6.9702E-05	367.46750595513214	70.008	0.30353	70.742	70.54	70.844	0.73421	-0.17029	0.00048361	NaN	3.0723	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	823340			14514	14259	10567	10645							0.12708105618071386
FILGWRRRSKP	11	Unmodified	_FILGWRRRSKP_					0	0	0			REV__ICK|p.S409F|1|0.4|ENSG00000112144|chr6:53012154-53012154|G/A|missense_variant	REV__ICK|p.S409F|1|0.4|ENSG00000112144|chr6:53012154-53012154|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	472.6925048828125	3	472.6176	1414.83097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.27	1	141.31	140.81	141.81	0.04216								0	0	0	0.16337	1	55262	55262		0.40827	0.26837	1		+		14515	26774	10568	10646	14142	14142					0.14014935736190637
FILKRLKCV	9	Unmodified	_FILKRLKCV_					0	0	0			REV__ENSG00000185792|ENST00000332836|NLRP9	REV__ENSG00000185792|ENST00000332836|NLRP9	MULTI-MSMS	A375_MHC_IP_R2	2	373.972900390625	3	373.907212	1118.69981	-0.06537	-2.4442E-05	0.34969	0.00013075	0.28432	0.00010631	373.9072540188635	28.459	0.4567	29.138	28.757	29.214	0.67857					10	8	2	0	0	0	0.59266	1	9829	9829		15.248	7.6395	1	4877700	+		14516	21919	10569	10647	14143	14143					0.14520409043939253
FILLKLLKCLL	11	Unmodified	_FILLKLLKCLL_					0	0	0			REV__ENST00000255759.10_1_16:15960001-15960121:-|nuORF	REV__ENST00000255759.10_1_16:15960001-15960121:-|nuORF	MSMS	A375_MHC_IP_R2	2	658.939208984375	2	658.940545	1315.86654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.52	1	120.06	119.56	120.56	0.5321								0	0	0	0.16331	1	45537	45537		1.4819	0	1		+		14517	23145	10570	10648	14144	14144					0.22123837149001702
FILLLSTVVS	10	Unmodified	_FILLLSTVVS_					0	0	0		ENSG00000132824|ENST00000342374|SERINC3	ENSG00000132824|ENST00000342374|SERINC3	ENSG00000132824|ENST00000342374|SERINC3	MSMS	A375_MHC_IP_R1	1	546.73974609375	2	546.339175	1090.6638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.01	1	144.01	143.51	144.51	0								0	0	0	0.15451	1	55237	55237		6.2058	4.5532	1				14518	4454	10571	10649	14145	14145					0.12209230348094025
FILNMQPSM	9	Unmodified	_FILNMQPSM_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-MSMS	A375_MHC_IP_R2	2	361.2452697753906	3	360.845401	1079.51437	-0.35988	-0.00012986	0.40361	0.00014564	0.043731	1.578E-05	360.84547728354926	30.084	0.60805	30.802	30.608	31.216	0.71857					20	11	3	0	0	0	0.51106	1	10563	10563		13.615	0.74226	1	2691400	+		14519	18059	10572	10650	14146	14146					-0.022203615378202812
FILPKEIAV	9	Unmodified	_FILPKEIAV_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-SECPEP	A375_MHC_IP_R1	1	515.7207641601562	2	515.320786	1028.62702	-0.47921	-0.00024695	-0.81491	-0.00041994	-1.2941	-0.00066689	515.3208251147428	98.175	0.45572	98.175	97.999	98.455	0					12	8	2	0	0	0	0.69381	1	36094	36094		15.248	7.093	1	1895500			14520	6006	10573	10651	14147	14147					0.11384978522164602
FILPKEIAV	9	Unmodified	_FILPKEIAV_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-SECPEP	A375_MHC_IP_R2	2	515.2025146484375	2	515.320786	1028.62702	-0.94169	-0.00048527	-1.1703	-0.0006031	-2.112	-0.0010884	515.3210796667937	97.295	0.55923	98.051	97.873	98.432	0.75586					16	10	2	0	0	0	0.5212	1	36898	36898		26.268	2.2476	1	2188900			14521	6006	10573	10651	14148	14148					0.11384978522164602
FILPYIHKA	9	Unmodified	_FILPYIHKA_					0	0	0		ENST00000535479.5_1_12:7086310-7087113:-|nuORF;nc|ENSG00000111684|Q6P1A2-2|LPCAT3;ENSG00000111684|ENST00000261407|LPCAT3	ENST00000535479.5_1_12:7086310-7087113:-|nuORF	ENST00000535479.5_1_12:7086310-7087113:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	368.2868957519531	3	367.886694	1100.63825	0.6276	0.00023088	0.019989	7.3536E-06	0.64759	0.00023824	367.8867102106536	69.915	0.504	69.915	69.681	70.185	0					19	9	3	0	0	0	0.47674	1	25381	25381		29.841	15.435	1	2308500			14522	3018	10574	10652	14149	14149					0.09195800616316774
FILPYIHKA	9	Unmodified	_FILPYIHKA_					0	0	0		ENST00000535479.5_1_12:7086310-7087113:-|nuORF;nc|ENSG00000111684|Q6P1A2-2|LPCAT3;ENSG00000111684|ENST00000261407|LPCAT3	ENST00000535479.5_1_12:7086310-7087113:-|nuORF	ENST00000535479.5_1_12:7086310-7087113:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	368.2866516113281	3	367.886694	1100.63825	0.29489	0.00010849	-0.41163	-0.00015143	-0.11673	-4.2944E-05	367.88649041560114	69.033	0.50771	69.768	69.474	69.982	0.73511					20	9	3	0	0	0	0.71071	1	26162	26162		19.362	14.465	1	2787200			14523	3018	10574	10652	14150	14150					0.09195800616316774
FILQNTLL	8	Unmodified	_FILQNTLL_					0	0	0			REV__ENSG00000173679|ENST00000309623|OR1L1	REV__ENSG00000173679|ENST00000309623|OR1L1	MULTI-MSMS	A375_MHC_IP_R1	1	481.68975830078125	2	481.289485	960.564418	-0.30209	-0.00014539	0.24537	0.0001181	-0.056713	-2.7296E-05	481.2895829484179	91.931	0.7579	91.931	91.706	92.463	0					18	14	2	0	0	0	0.62444	1	33792	33792		43.858	3.901	1	1996700	+		14524	21238	10575	10653	14151	14151					0.08255832453994572
FILRIAKYK	9	Unmodified	_FILRIAKYK_					0	0	0			REV__ENSG00000183625|ENST00000395940|CCR3	REV__ENSG00000183625|ENST00000395940|CCR3	MULTI-SECPEP	A375_MHC_IP_R1	1	383.9190368652344	3	384.581493	1150.72265	-0.11769	-4.5263E-05	1.5772	0.00060657	1.4595	0.00056131	384.9161769583606	38.218	0.25313	38.218	38.118	38.371	0					5	4	2	0	0	0	0.7911	1	12965	12965		4.5289	2.0304	1	462760	+		14525	21765	10576	10654	14152	14152					0.15331751433086538
FILTKDQPV	9	Unmodified	_FILTKDQPV_					0	0	0		nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;ENSG00000186416|ENST00000688521|NKRF	nc|ENSG00000186416|O15226|NKRF	nc|ENSG00000186416|O15226|NKRF	MULTI-SECPEP	A375_MHC_IP_R2	2	531.1744995117188	2	530.8055	1059.59645	-0.69227	-0.00036746	1.2824	0.0006807	0.59011	0.00031324	531.3079929925315	66.987	0.4052	67.723	67.495	67.9	0.73631					11	7	2	0	0	0	0.57304	1	25367	25367		19.257	5.7491	1	600570			14526	8746	10577	10655	14153	14153					0.06903200137116983
FILTRNVLMT	10	Unmodified	_FILTRNVLMT_					0	0	0		ENSG00000184478|ENST00000641160|OR56A3	ENSG00000184478|ENST00000641160|OR56A3	ENSG00000184478|ENST00000641160|OR56A3	MULTI-MSMS	A375_MHC_IP_R2	2	605.246337890625	2	604.347009	1206.67946	-0.46536	-0.00028124	0.71374	0.00043134	0.24838	0.00015011	604.348161846805	129.93	1.265	130.14	129.69	130.96	0.2142					68	24	4	0	0	0	0.71619	1	51303	51303		8.7454	4.801	1	40782000			14527	8588	10578	10656	14154	14154					0.08439193593471828
FILVGIVHY	9	Unmodified	_FILVGIVHY_					0	0	0		nc|ENSG00000183484|Q9UNW8-3|GPR132;ENSG00000183484|ENST00000329797|GPR132	nc|ENSG00000183484|Q9UNW8-3|GPR132	nc|ENSG00000183484|Q9UNW8-3|GPR132	MSMS	A375_MHC_IP_R1	1	530.9137573242188	2	530.813128	1059.6117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.465	1	95.465	94.965	95.965	0								0	0	0	0.15043	1	35088	35088		20.871	2.7362	1				14528	8497	10579	10657	14155	14155					0.0842811172499296
FIMFDLML	8	Unmodified	_FIMFDLML_					0	0	0			REV__ENST00000373840.8_1_9:123943305-123943461:-|nuORF	REV__ENST00000373840.8_1_9:123943305-123943461:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	516.2097778320312	2	515.261025	1028.5075	-0.47357	-0.00024401	-2.9291	-0.0015093	-3.4027	-0.0017533	515.2607067613209	70.723	0.30475	70.723	70.545	70.85	0					11	5	3	0	0	0	0.77554	1	25694	25694		11.114	0.93107	1	770660	+		14529	24100	10580	10658	14156	14156					-0.005616744183953415
FIMFILYGF	9	Unmodified	_FIMFILYGF_					0	0	0			REV__ENSG00000185344|ENST00000330342|ATP6V0A2	REV__ENSG00000185344|ENST00000330342|ATP6V0A2	MULTI-SECPEP	A375_MHC_IP_R1	1	383.9695739746094	3	384.205035	1149.59328	0.37238	0.00014307	-1.4786	-0.00056808	-1.1062	-0.00042501	384.20429775720936	51.171	0.30465	51.171	51.017	51.322	0					7	5	2	0	0	0	0.79837	1	18191	18191		5.7319	1.4026	1	599660	+		14530	21890	10581	10659	14157	14157					0.024462337587692673
FIMHHCASLY	10	Unmodified	_FIMHHCASLY_					0	0	0		ENSG00000152078|ENST00000370203|TLCD4	ENSG00000152078|ENST00000370203|TLCD4	ENSG00000152078|ENST00000370203|TLCD4	MULTI-MSMS	A375_MHC_IP_R1	1	611.7269897460938	2	611.280812	1220.54707	-0.15095	-9.2276E-05	-1.0233	-0.00062553	-1.1743	-0.0007178	611.2799895986855	43.254	0.3074	43.254	43.043	43.351	0					9	5	2	0	0	0	0.66712	1	15009	15009		15.847	3.3156	1	2304800			14531	5943	10582	10660	14158	14158					-0.05438154414969176
FINILFLLFSL	11	Unmodified	_FINILFLLFSL_					0	0	0			REV__ENST00000394155.6_1_X:135292840-135293086:+|nuORF	REV__ENST00000394155.6_1_X:135292840-135293086:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	669.8031616210938	2	670.40485	1338.79515	-0.56931	-0.00038167	2.2501	0.0015085	1.6808	0.0011268	670.4066624433349	142.46	1.4231	142.49	141.47	142.89	0.030731					42	27	3	0	0	0	1.001	1	55588	55588		1.1933	1.1933	1	2607300	+		14532	24302	10583	10661	14159	14159					0.139300407159908
FINNNTAAN	9	Unmodified	_FINNNTAAN_					0	0	0		nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000113742|ENST00000265085|CPEB4	nc|ENSG00000113742|Q17RY0-2|CPEB4	nc|ENSG00000113742|Q17RY0-2|CPEB4	MSMS	A375_MHC_IP_R1	1	489.674072265625	2	489.735606	977.456658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.274	1	58.274	57.774	58.774	0								0	0	0	0.15069	1	20929	20929		20.454	3.5113	1				14533	3180	10584	10662	14160	14160					-0.03297164147386411
FINNNTAAN	9	Unmodified	_FINNNTAAN_					0	0	0		nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000113742|ENST00000265085|CPEB4	nc|ENSG00000113742|Q17RY0-2|CPEB4	nc|ENSG00000113742|Q17RY0-2|CPEB4	MSMS	A375_MHC_IP_R2	2	489.6735534667969	2	489.735606	977.456658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.318	1	58.067	57.567	58.567	0.74894								0	0	0	0.15069	1	21672	21672		20.454	7.9221	1				14534	3180	10584	10662	14161	14161					-0.03297164147386411
FINNPKPKKPL	11	Unmodified	_FINNPKPKKPL_					0	0	0		ENST00000473604.2_1_9:132580793-132585603:-|nuORF;ENSG00000136827|ENST00000351698|TOR1A;nc|ENSG00000136827|O14656-2|TOR1A;ENST00000473084.1_1_9:132584712-132586364:-|nuORF	ENST00000473604.2_1_9:132580793-132585603:-|nuORF	ENST00000473604.2_1_9:132580793-132585603:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	647.62451171875	2	648.395348	1294.77614	-0.48826	-0.00031659	-2.3128	-0.0014996	-2.8011	-0.0018162	648.3938693280054	142.53	1.4234	142.56	141.36	142.79	0.030731					35	27	2	0	0	0	0.99985	1	55783	55783		2.7352	1.4057	1	4575300			14535	4824	10585	10663	14162	14162					0.14054504144928615
FINPKGNWLL	10	Unmodified	_FINPKGNWLL_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	MULTI-SECPEP	A375_MHC_IP_R1	1	601.69775390625	2	601.340041	1200.66553	-0.31403	-0.00018884	-1.4854	-0.00089326	-1.7995	-0.0010821	601.33950643263	102	0.45652	102	101.65	102.1	0					12	8	2	0	0	0	0.61429	1	37476	37476		24.021	11.489	1	851790			14536	6794	10586	10664	14163	14163					0.07322284156703063
FINRKQAL	8	Unmodified	_FINRKQAL_					0	0	0			REV__tr|U7STF1|U7STF1_FUSNUExodeoxyribonuclease7largesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=xseAPE=3SV=1	REV__tr|U7STF1|U7STF1_FUSNUExodeoxyribonuclease7largesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=xseAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	495.6971130371094	2	495.298176	988.581799	-0.38284	-0.00018962	-1.0338	-0.00051206	-1.4167	-0.00070168	495.2975371928612	133.97	0.35699	134.13	134.01	134.37	0.16487					10	6	2	0	0	0	0.972	1	52709	52709		2.3027	1.7012	1	9708200	+		14537	28482	10587	10665	14164	14164					0.0870517277963927
FINRKQAL	8	Unmodified	_FINRKQAL_					0	0	0			REV__tr|U7STF1|U7STF1_FUSNUExodeoxyribonuclease7largesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=xseAPE=3SV=1	REV__tr|U7STF1|U7STF1_FUSNUExodeoxyribonuclease7largesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=xseAPE=3SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	495.298176	988.581799	-0.64229	-0.00031812	-1.5415	-0.00076352	-2.1838	-0.0010816	495.297359312769	134.09	0.50671	134.09	133.97	134.47	0	-0.020668	-0.00026479	NaN	2.3027	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12188000	+		14538	28482	10587	10665							0.0870517277963927
FIPEARGL	8	Unmodified	_FIPEARGL_					0	0	0		ENST00000471517.5_1_19:38845366-38853372:+|nuORF;ENST00000412458.6_1_19:38845366-38860119:+|nuORF;ENSG00000099338|ENST00000409235|CATSPERG	ENST00000471517.5_1_19:38845366-38853372:+|nuORF	ENST00000471517.5_1_19:38845366-38853372:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	452.1581726074219	2	451.758352	901.502152	-0.061679	-2.7864E-05	0.097278	4.3946E-05	0.035599	1.6082E-05	451.7583898684131	62.583	0.71774	62.583	62.351	63.069	0					22	13	2	0	0	0	0.87643	1	22637	22637		25.399	0	1	2215800			14539	2073	10588	10666	14165	14165					0.047461061056765175
FIPIMETAL	9	Unmodified	_FIPIMETAL_					0	0	0			REV__ENST00000216605.12_1_14:64867563-64877841:+|nuORF	REV__ENST00000216605.12_1_14:64867563-64877841:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	517.6870727539062	2	517.783179	1033.5518	-0.61903	-0.00032053	-3.1531	-0.0016326	-3.7721	-0.0019531	517.7792658523929	68.555	0.50665	69.29	68.968	69.474	0.73512					14	9	2	0	0	0	0.5339	1	25891	25891		18.135	4.2289	1	882680	+		14540	23037	10589	10667	14166	14166					0.03637052999442858
FIPLRYIILI	10	Unmodified	_FIPLRYIILI_					0	0	0		ENST00000456504.5_1_15:94858078-95022260:+|nuORF;nc|ENSG00000140563|Q6DN12-2|MCTP2;ENSG00000140563|ENST00000357742|MCTP2;nc|ENSG00000140563|Q6DN12-3|MCTP2	ENST00000456504.5_1_15:94858078-95022260:+|nuORF	ENST00000456504.5_1_15:94858078-95022260:+|nuORF	MSMS	A375_MHC_IP_R2	2	630.8601684570312	2	630.907559	1259.80057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.444	1	96.195	95.695	96.695	0.75045								0	0	0	0.15585	1	36256	36256		1.8442	0	1				14541	5170	10590	10668	14167	14167					0.1810576429845696
FIPTGSVLC	9	Unmodified	_FIPTGSVLC_					0	0	0		nc|ENSG00000139793|Q5VZF2-2|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	MSMS	A375_MHC_IP_R1	1	468.6689147949219	2	468.746596	935.478639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.321	1	68.321	67.821	68.821	0								0	0	0	0.15486	1	24768	24768		13.508	0.97634	1				14542	5111	10591	10669	14168	14168					0.008319242768379809
FIQEFNQFEQ	10	Unmodified	_FIQEFNQFEQ_					0	0	0			REV__ENSG00000171109|ENST00000471841|MFN1	REV__ENSG00000171109|ENST00000471841|MFN1	MSMS	A375_MHC_IP_R2	2	665.1991577148438	2	665.309135	1328.60372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.67	1	111.4	110.9	111.9	0.73692								0	0	0	0.15435	1	41741	41741		6.7232	2.7788	1		+		14543	21043	10592	10670	14169	14169					-0.04744112053117533
FIQHEVVEE	9	Unmodified	_FIQHEVVEE_					0	0	0		ENSG00000162877|ENST00000367136|PM20D1;nc|ENSG00000162877|Q6GTS8-2|PM20D1;ENST00000460624.5_1_1:205801865-205819200:-|nuORF	ENSG00000162877|ENST00000367136|PM20D1	ENSG00000162877|ENST00000367136|PM20D1	MULTI-SECPEP	A375_MHC_IP_R2	2	565.70556640625	2	565.279846	1128.54514	-0.35812	-0.00020244	-0.88216	-0.00049867	-1.2403	-0.00070111	565.2796093212258	69.433	0.81361	70.167	69.879	70.693	0.73421					42	15	4	0	0	0	0.56537	1	26400	26400		29.082	7.3349	1	7559300			14544	6607	10593	10671	14170	14170					-0.013991686275630855
FIQMIMLFI	9	Oxidation (M)	_FIQM(Oxidation (M))IMLFI_		FIQM(0.5)IM(0.5)LFI		FIQM(0)IM(0)LFI	0	0	1		ENST00000567478.5_1_16:19467998-19503571:+|nuORF;nc|ENSG00000103534|Q6UXY8-3|TMC5;nc|ENSG00000103534|Q6UXY8-4|TMC5;ENSG00000103534|ENST00000542583|TMC5;nc|ENSG00000103534|Q6UXY8-2|TMC5	ENST00000567478.5_1_16:19467998-19503571:+|nuORF	ENST00000567478.5_1_16:19467998-19503571:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	586.7160034179688	2	586.316331	1170.61811	-0.35094	-0.00020576	0.56042	0.00032858	0.20948	0.00012282	586.3167003232332	125.24	0.50089	125.24	124.9	125.4	0					15	9	3	0	0	0	0.1209	1	47578	47578		46.921	10.455	2	51285000			14545	13571	10594	10672	14171	14171		464;465			0.039625455698342194
FIQMIMLFI	9	Oxidation (M)	_FIQM(Oxidation (M))IMLFI_		FIQM(0.5)IM(0.5)LFI		FIQM(0)IM(0)LFI	0	0	1		ENST00000567478.5_1_16:19467998-19503571:+|nuORF;nc|ENSG00000103534|Q6UXY8-3|TMC5;nc|ENSG00000103534|Q6UXY8-4|TMC5;ENSG00000103534|ENST00000542583|TMC5;nc|ENSG00000103534|Q6UXY8-2|TMC5	ENST00000567478.5_1_16:19467998-19503571:+|nuORF	ENST00000567478.5_1_16:19467998-19503571:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	586.7162475585938	2	586.316331	1170.61811	-0.50799	-0.00029784	-0.080031	-4.6923E-05	-0.58802	-0.00034477	586.3161605145643	124.73	0.40247	125.06	124.9	125.3	0.32968					13	7	3	0	0	0	0.069885	1	48356	48356		56.541	18.39	2	40556000			14546	13571	10594	10672	14172	14172		464;465			0.039625455698342194
FIQPMQSFY	9	Unmodified	_FIQPMQSFY_					0	0	0			REV__nc|ENSG00000125733|Q15642-4|TRIP10	REV__nc|ENSG00000125733|Q15642-4|TRIP10	MSMS	A375_MHC_IP_R2	2	580.6920776367188	2	580.775885	1159.53722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.249	1	77.992	77.492	78.492	0.74293								0	0	0	0.15486	1	29334	29334		12.532	0.29089	1		+		14547	18357	10595	10673	14173	14173					-0.03617019148691725
FIQQGQIYQ	9	Unmodified	_FIQQGQIYQ_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2	REV__ENSG00000181555|ENST00000409792|SETD2	MULTI-SECPEP	A375_MHC_IP_R1	1	562.668212890625	2	562.790381	1123.56621	-0.23971	-0.00013491	-1.1173	-0.00062883	-1.3571	-0.00076374	563.2909610805929	111.66	0.35727	111.66	111.41	111.77	0					8	6	2	0	0	0	0.69504	1	40910	40910		18.135	7.3111	1	869170	+		14548	21657	10596	10674	14174	14174					0.009368414719347129
FIQRLWYFWFL	11	Unmodified	_FIQRLWYFWFL_					0	0	0		VOPP1|p.S56F|1|0.06|ENSG00000154978|chr7:55497637-55497637|G/A|missense_variant	VOPP1|p.S56F|1|0.06|ENSG00000154978|chr7:55497637-55497637|G/A|missense_variant	VOPP1|p.S56F|1|0.06|ENSG00000154978|chr7:55497637-55497637|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	809.855712890625	2	809.932097	1617.84964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.05	1	108.81	108.31	109.31	0.75436								0	0	0	0.16354	1	40809	40809		0.30703	0.03801	1				14549	30143	10597	10675	14175	14175					0.06543052587403508
FIRDPLTL	8	Unmodified	_FIRDPLTL_					0	0	0		ENSG00000001084|ENST00000650454|GCLC	ENSG00000001084|ENST00000650454|GCLC	ENSG00000001084|ENST00000650454|GCLC	MULTI-MSMS	A375_MHC_IP_R2	2	488.18707275390625	2	487.78711	973.559667	-0.43136	-0.00021041	-0.68679	-0.00033501	-1.1181	-0.00054542	487.78699069743965	85.221	1.8879	85.958	85.472	87.36	0.73602					69	36	4	0	0	0	0.33238	1	32348	32348		56.177	1.4035	1	15088000			14550	842	10598	10676	14176	14176					0.0718294831123103
FIRDSDYSY	9	Unmodified	_FIRDSDYSY_					0	0	0			REV__tr|U7SRX6|U7SRX6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01463PE=4SV=1	REV__tr|U7SRX6|U7SRX6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01463PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	583.1895751953125	2	583.261653	1164.50875	-0.18163	-0.00010594	-0.27953	-0.00016304	-0.46116	-0.00026898	583.2614372250392	101.24	0.80942	101.24	100.89	101.7	0					34	15	3	0	0	0	0.68216	1	37361	37361		8.5933	0	1	3742900	+		14551	28408	10599	10677	14177	14177					-0.06692045524300738
FIRETILNL	9	Unmodified	_FIRETILNL_					0	0	0		ENST00000398014.6_1_15:23021426-23033379:-|nuORF;ENST00000337451.7_1_15:23027862-23033379:-|nuORF	ENST00000398014.6_1_15:23021426-23033379:-|nuORF	ENST00000398014.6_1_15:23021426-23033379:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	373.95001220703125	3	373.557125	1117.64954	0.41787	0.0001561	-0.99706	-0.00037246	-0.57919	-0.00021636	373.55670167810564	45.885	0.25151	46.65	46.453	46.704	0.76519					6	4	2	0	0	0	0.68705	1	17178	17178		8.1555	0.54658	1	552420			14552	10829	10600	10678	14178	14178					0.09542577919796713
FIRETILNL	9	Unmodified	_FIRETILNL_					0	0	0		ENST00000398014.6_1_15:23021426-23033379:-|nuORF;ENST00000337451.7_1_15:23027862-23033379:-|nuORF	ENST00000398014.6_1_15:23021426-23033379:-|nuORF	ENST00000398014.6_1_15:23021426-23033379:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	373.557125	1117.64954	0.16908	6.3162E-05	0.21735	8.1192E-05	0.38643	0.00014435	373.5571441285495	46.863	0.40639	46.863	46.545	46.952	0	0.10625	0.00022208	NaN	8.1555	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1145200			14553	10829	10600	10678							0.09542577919796713
FIRFQLLQV	9	Unmodified	_FIRFQLLQV_					0	0	0		ENST00000274400.9_1_5:70331490-70331613:-|nuORF	ENST00000274400.9_1_5:70331490-70331613:-|nuORF	ENST00000274400.9_1_5:70331490-70331613:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	582.75048828125	2	582.350409	1162.68626	-0.18223	-0.00010612	0.33197	0.00019332	0.14975	8.7205E-05	582.3505634560726	98.309	0.3025	98.309	98.101	98.403	0					9	5	2	0	0	0	0.74651	1	36123	36123		2.0598	0	1	1182000			14554	10398	10601	10679	14179	14179					0.1114287453635825
FIRFQTKY	8	Unmodified	_FIRFQTKY_					0	0	0		TOP3B|p.T193I|1|0.45|ENSG00000100038|chr22:21970213-21970213|G/A|missense_variant	TOP3B|p.T193I|1|0.45|ENSG00000100038|chr22:21970213-21970213|G/A|missense_variant	TOP3B|p.T193I|1|0.45|ENSG00000100038|chr22:21970213-21970213|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	368.606201171875	3	368.206315	1101.59712	0.28262	0.00010406	0.50425	0.00018567	0.78687	0.00028973	368.2063503920924	64.155	0.81374	64.896	64.446	65.259	0.74022					22	15	2	0	0	0	0.77624	1	24325	24325		6.2058	0.47393	1	1270400			14555	29377	10602	10680	14180	14180					0.05038039576857045
FIRGDQLI	8	Unmodified	_FIRGDQLI_					0	0	0			REV__ENSG00000125835|ENST00000381342|SNRPB	REV__ENSG00000125835|ENST00000381342|SNRPB	MULTI-MSMS	A375_MHC_IP_R1	1	481.6771240234375	2	481.276909	960.539266	-0.76364	-0.00036752	0.90228	0.00043425	0.13865	6.6727E-05	481.27740544358653	68.178	0.66003	68.178	67.854	68.514	0					26	12	3	0	0	0	0.16582	1	24706	24706		78.149	3.7266	1	4330100	+		14556	18366	10603	10681	14181	14181					0.05741777651417124
FIRKPQLIK	9	Unmodified	_FIRKPQLIK_					0	0	0		ENSG00000196458|ENST00000360187|ZNF605;nc|ENSG00000196458|Q86T29-2|ZNF605	ENSG00000196458|ENST00000360187|ZNF605	ENSG00000196458|ENST00000360187|ZNF605	MULTI-MSMS	A375_MHC_IP_R1	1	382.3196105957031	3	381.585126	1141.73355	0.53641	0.00020469	-0.10629	-4.0559E-05	0.43012	0.00016413	381.585017257958	54.016	0.85929	54.016	53.505	54.364	0					35	16	3	0	0	0	0.32889	1	19257	19257		28.495	8.08	1	4194100			14557	9045	10604	10682	14182	14182					0.16835153807346614
FIRKPQLIK	9	Unmodified	_FIRKPQLIK_					0	0	0		ENSG00000196458|ENST00000360187|ZNF605;nc|ENSG00000196458|Q86T29-2|ZNF605	ENSG00000196458|ENST00000360187|ZNF605	ENSG00000196458|ENST00000360187|ZNF605	MULTI-MSMS	A375_MHC_IP_R2	2	381.9851379394531	3	381.585126	1141.73355	-0.59649	-0.00022761	0.38269	0.00014603	-0.21379	-8.158E-05	381.585211274638	52.968	1.0151	53.719	53.183	54.198	0.75105					46	19	4	0	0	0	0.44183	1	19948	19948		22.658	4.285	1	5452400			14558	9045	10604	10682	14183	14183					0.16835153807346614
FIRKPQLIK	9	Unmodified	_FIRKPQLIK_					0	0	0		ENSG00000196458|ENST00000360187|ZNF605;nc|ENSG00000196458|Q86T29-2|ZNF605	ENSG00000196458|ENST00000360187|ZNF605	ENSG00000196458|ENST00000360187|ZNF605	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	381.585126	1141.73355	0.53641	0.00020469	-0.10629	-4.0559E-05	0.43012	0.00016413	381.585017257958	54.016	0.85929	54.016	53.505	54.364	0	0.14828	-0.00027255	NaN	28.495	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4194100			14559	9045	10604	10682							0.16835153807346614
FIRLVSTIIF	10	Unmodified	_FIRLVSTIIF_					0	0	0			REV__OR9G1|p.S228F|1|0.1|ENSG00000174914|chr11:56701070-56701070|C/T|missense_variant	REV__OR9G1|p.S228F|1|0.1|ENSG00000174914|chr11:56701070-56701070|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	604.7509155273438	2	604.873717	1207.73288	-0.24689	-0.00014934	-1.0012	-0.00060563	-1.2481	-0.00075496	605.3745008338722	97.242	0.4044	97.242	96.934	97.338	0					10	7	2	0	0	0	0.74754	1	35681	35681		29.082	5.061	1	1645900	+		14560	27703	10605	10683	14184	14184					0.13732314367666731
FIRLVSTIIF	10	Unmodified	_FIRLVSTIIF_					0	0	0			REV__OR9G1|p.S228F|1|0.1|ENSG00000174914|chr11:56701070-56701070|C/T|missense_variant	REV__OR9G1|p.S228F|1|0.1|ENSG00000174914|chr11:56701070-56701070|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	605.1666870117188	2	604.873717	1207.73288	-0.37982	-0.00022975	-2.6783	-0.00162	-3.0581	-0.0018498	604.8718907401634	96	0.25394	96.75	96.551	96.805	0.75045					6	4	2	0	0	0	0.64716	1	36454	36454		36.127	12.106	1	972090	+		14561	27703	10605	10683	14185	14185					0.13732314367666731
FISAGSVESGP	11	Unmodified	_FISAGSVESGP_					0	0	0			REV__ENST00000310421.4_1_8:67578936-67579050:-|nuORF	REV__ENST00000310421.4_1_8:67578936-67579050:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	526.191650390625	2	525.758746	1049.50294	-0.45795	-0.00024077	-0.61918	-0.00032554	-1.0771	-0.00056631	525.7584579902683	98.36	0.76317	99.119	98.691	99.454	0.75977					30	14	3	0	0	0	0.59093	1	37431	37431		24.021	4.7636	1	4691900	+		14562	23501	10606	10684	14186	14186					-0.019831440359666885
FISAGSVESGP	11	Unmodified	_FISAGSVESGP_					0	0	0			REV__ENST00000310421.4_1_8:67578936-67579050:-|nuORF	REV__ENST00000310421.4_1_8:67578936-67579050:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	525.758746	1049.50294	-0.45795	-0.00024077	-0.61918	-0.00032554	-1.0771	-0.00056631	525.7584579902683	98.36	0.76317	99.119	98.691	99.454	0.75977	0.0018513	-0.00010586	NaN	24.021	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4691900	+		14563	23501	10606	10684							-0.019831440359666885
FISEFEHRV	9	Unmodified	_FISEFEHRV_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13;ENST00000527047.5_1_11:237024-247462:+|nuORF	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-MSMS	A375_MHC_IP_R1	1	388.9330139160156	3	388.532979	1162.57711	0.40512	0.0001574	0.039342	1.5286E-05	0.44446	0.00017269	388.5328904822219	47.897	0.80864	47.897	47.517	48.325	0					42	15	5	0	0	0	0.06083	1	16835	16835		47.732	34.117	1	9769100			14564	8680	10607	10685	14187	14187					0.0023224384622153593
FISEFEHRV	9	Unmodified	_FISEFEHRV_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13;ENST00000527047.5_1_11:237024-247462:+|nuORF	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-SECPEP	A375_MHC_IP_R2	2	388.93304443359375	3	388.532979	1162.57711	0.045115	1.7529E-05	0.3112	0.00012091	0.35632	0.00013844	388.5330080521253	46.979	0.71158	47.741	47.462	48.174	0.76128					38	13	4	0	0	0	0.59927	1	17608	17608		29.437	29.437	1	8209300			14565	8680	10607	10685	14188	14188					0.0023224384622153593
FISEIIHQL	9	Unmodified	_FISEIIHQL_					0	0	0		nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	MULTI-SECPEP	A375_MHC_IP_R1	1	550.7103881835938	2	550.310949	1098.60735	-0.49013	-0.00026972	-0.16653	-9.1643E-05	-0.65666	-0.00036137	550.3107782854464	101.93	2.5364	101.93	101.6	104.13	0					103	49	4	0	0	0	0.11887	1	37420	37420		69.105	4.8686	1	13566000			14566	2880	10608	10686	14189	14189					0.06198602511426543
FISEIIHQL	9	Unmodified	_FISEIIHQL_					0	0	0		nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6181030273438	2	550.310949	1098.60735	-0.67308	-0.0003704	0.39264	0.00021607	-0.28044	-0.00015433	550.3110825378219	101.06	1.6803	101.83	101.5	103.18	0.76428					75	32	3	0	0	0	0.038931	1	38296	38296		99.799	21.65	1	14418000			14567	2880	10608	10686	14190	14190					0.06198602511426543
FISENSMDSA	10	Unmodified	_FISENSMDSA_					0	0	0		SETD2|p.I1883F|1|0.27|ENSG00000181555|chr3:47084133-47084133|T/A|missense_variant	SETD2|p.I1883F|1|0.27|ENSG00000181555|chr3:47084133-47084133|T/A|missense_variant	SETD2|p.I1883F|1|0.27|ENSG00000181555|chr3:47084133-47084133|T/A|missense_variant	MSMS	A375_MHC_IP_R2	2	550.7101440429688	2	550.731871	1099.44919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.97	1	101.73	101.23	102.23	0.76428								0	0	0	0.15308	1	38276	38276		10.824	2.2306	1				14568	29142	10609	10687	14191	14191					-0.09655684529957398
FISFVQSL	8	Unmodified	_FISFVQSL_					0	0	0		SETX|p.P413S|1|0.28|ENSG00000107290|chr9:132330361-132330361|G/A|missense_variant	SETX|p.P413S|1|0.28|ENSG00000107290|chr9:132330361-132330361|G/A|missense_variant	SETX|p.P413S|1|0.28|ENSG00000107290|chr9:132330361-132330361|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	471.1604919433594	2	470.760561	939.506569	-0.74135	-0.000349	0.25538	0.00012022	-0.48596	-0.00022877	470.76066293075957	66.328	0.51027	67.064	66.831	67.342	0.73631					14	9	2	0	0	0	0.32469	1	25145	25145		65.235	19.214	1	1051200			14569	29144	10610	10688	14192	14192					0.03439570528564673
FISFVQSL	8	Unmodified	_FISFVQSL_					0	0	0		SETX|p.P413S|1|0.28|ENSG00000107290|chr9:132330361-132330361|G/A|missense_variant	SETX|p.P413S|1|0.28|ENSG00000107290|chr9:132330361-132330361|G/A|missense_variant	SETX|p.P413S|1|0.28|ENSG00000107290|chr9:132330361-132330361|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	470.760561	939.506569	-0.68327	-0.00032166	0.45712	0.00021519	-0.22615	-0.00010646	470.76077781852337	67.253	0.45969	67.253	66.99	67.449	0	0.094685	9.5935E-05	NaN	65.235	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	914340			14570	29144	10610	10688							0.03439570528564673
FISNAESYY	9	Unmodified	_FISNAESYY_					0	0	0			REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1	REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	547.1829833984375	2	547.245472	1092.47639	-0.50072	-0.00027402	-1.3373	-0.00073182	-1.838	-0.0010058	547.2447568656088	103.4	0.7114	103.4	103.06	103.78	0					18	13	2	0	0	0	0.41409	1	37988	37988		24.021	0.87215	1	1275100	+		14571	28658	10611	10689	14193	14193					-0.06614832927289171
FISNAESYY	9	Unmodified	_FISNAESYY_					0	0	0			REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1	REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	547.245472	1092.47639	-0.50072	-0.00027402	-1.3373	-0.00073182	-1.838	-0.0010058	547.2447568656088	103.4	0.7114	103.4	103.06	103.78	0	-0.027128	0.00039102	NaN	24.021	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1275100	+		14572	28658	10611	10689							-0.06614832927289171
FISNITQANP	10	Unmodified	_FISNITQANP_					0	0	0		ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-3|UBA6;nc|ENSG00000033178|A0AVT1-4|UBA6;ENST00000429659.7_1_4:68529542-68566852:-|nuORF	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1552124023438	2	552.787838	1103.56112	-0.77702	-0.00042953	-1.0433	-0.00057674	-1.8203	-0.0010063	553.2865917299451	76.866	0.20394	77.609	77.453	77.657	0.74293					5	3	2	0	0	0	0.8528	1	29164	29164		11.495	4.7715	1	751100			14573	1123	10612	10690	14194	14194					0.013485376093285595
FISNWRSRLL	10	Unmodified	_FISNWRSRLL_					0	0	0		ENST00000560215.5_1_15:51676280-51676499:+|nuORF	ENST00000560215.5_1_15:51676280-51676499:+|nuORF	ENST00000560215.5_1_15:51676280-51676499:+|nuORF	MSMS	A375_MHC_IP_R1	1	646.6388549804688	2	646.367121	1290.71969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.44	1	119.44	118.94	119.94	0								0	0	0	0.15435	1	44152	44152		6.7232	0.51738	1				14574	13488	10613	10691	14195	14195					0.08595876308277184
FISPAKVEV	9	Unmodified	_FISPAKVEV_					0	0	0			REV__tr|U7SK84|U7SK84_FUSNUTrksystempotassiumuptakeproteinTrkAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02136PE=4SV=1	REV__tr|U7SK84|U7SK84_FUSNUTrksystempotassiumuptakeproteinTrkAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02136PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	495.68646240234375	2	495.286943	988.559333	-0.26842	-0.00013294	0.087764	4.3468E-05	-0.18066	-8.9476E-05	495.2868810656289	88.978	1.4198	88.978	88.561	89.981	0					96	27	5	0	0	0	0.31606	1	32587	32587		39.95	0	1	233400000	+		14575	28246	10614	10692	14196	14196					0.0645952859136969
FITEILLID	9	Unmodified	_FITEILLID_					0	0	0			REV__nc|ENSG00000116984|Q99707-2|MTR	REV__nc|ENSG00000116984|Q99707-2|MTR	MULTI-MSMS	A375_MHC_IP_R1	1	359.42822265625	3	359.546114	1075.61651	0.092857	3.3386E-05	-2.313	-0.00083164	-2.2202	-0.00079826	359.87985756171275	20.034	0.35443	20.034	19.725	20.079	0					11	6	2	0	0	0	0.4867	1	5066	5066		14.405	3.6059	1	2774800	+		14576	17984	10615	10693	14197	14197					0.08172951077108337
FITGLQDGI	9	Unmodified	_FITGLQDGI_					0	0	0			REV__nc|ENSG00000100433|P57789|KCNK10	REV__nc|ENSG00000100433|P57789|KCNK10	MULTI-SECPEP	A375_MHC_IP_R1	1	481.7076416015625	2	482.260925	962.507297	-0.29223	-0.00014093	0.22354	0.0001078	-0.068688	-3.3126E-05	482.26095011733685	101.38	0.70816	101.38	101.04	101.75	0					21	13	3	0	0	0	0.62767	1	37181	37181		11.64	2.2929	1	1992500	+		14577	17092	10616	10694	14198	14198					0.02454365177618456
FITINDTSD	9	Unmodified	_FITINDTSD_					0	0	0			REV__ENSG00000011677|ENST00000370314|GABRA3	REV__ENSG00000011677|ENST00000370314|GABRA3	MULTI-MSMS	A375_MHC_IP_R2	2	514.1538696289062	2	513.242929	1024.47131	-0.71406	-0.00036649	-0.23805	-0.00012218	-0.95211	-0.00048866	513.2432123175223	45.974	0.45474	46.739	46.503	46.957	0.76519					18	8	3	0	0	0	0.61998	1	17166	17166		13.906	0.39817	1	3169400	+		14578	16217	10617	10695	14199	14199					-0.03995136789899334
FITKQIKQ	8	Unmodified	_FITKQIKQ_					0	0	0		ENSG00000011028|ENST00000303375|MRC2	ENSG00000011028|ENST00000303375|MRC2	ENSG00000011028|ENST00000303375|MRC2	MSMS	A375_MHC_IP_R2	2	503.2125549316406	2	503.30821	1004.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.28	1	138.37	137.87	138.87	0.083969								0	0	0	0.16876	1	54233	54233		7.9102	1.187	1				14579	990	10618	10696	14200	14200					0.09974923719607887
FITSQIGPI	9	Unmodified	_FITSQIGPI_					0	0	0		nc|ENSG00000166589|O75309-4|CDH16;nc|ENSG00000166589|O75309-3|CDH16;nc|ENSG00000166589|O75309-2|CDH16;ENSG00000166589|ENST00000299752|CDH16	nc|ENSG00000166589|O75309-4|CDH16	nc|ENSG00000166589|O75309-4|CDH16	MULTI-MSMS	A375_MHC_IP_R2	2	977.571533203125	1	975.550959	974.543683	-0.060327	-5.8852E-05	0.1305	0.0001273	0.070169	6.8453E-05	975.5510353169575	107.73	0.66464	108.48	108.2	108.86	0.75436					28	12	3	0	0	0	0.64808	1	40664	40664		11.64	0.81637	1	8015000			14580	14743	10619	10697	14201	14201					0.055392420743373805
FIVLWKRKKV	10	Unmodified	_FIVLWKRKKV_					0	0	0		ENST00000264192.7_1_2:158272088-158272232:-|nuORF	ENST00000264192.7_1_2:158272088-158272232:-|nuORF	ENST00000264192.7_1_2:158272088-158272232:-|nuORF	MSMS	A375_MHC_IP_R2	2	658.800537109375	2	658.9319	1315.84925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.33	1	144.36	143.86	144.86	0.024414								0	0	0	0.1552	1	56381	56381		3.9444	0.94915	1				14581	10331	10620	10698	14202	14202					0.20395677658189015
FIVRYGKLV	9	Unmodified	_FIVRYGKLV_					0	0	0			REV__nc|ENSG00000177103|Q8TD84-2|DSCAML1	REV__nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-SECPEP	A375_MHC_IP_R1	1	548.239501953125	2	547.839677	1093.6648	-0.4674	-0.00025606	0.27518	0.00015076	-0.19222	-0.0001053	547.8396676999188	104.9	0.55591	104.9	104.69	105.25	0					20	10	3	0	0	0	0.69504	1	38515	38515		18.135	7.3111	1	2267300	+		14582	21439	10621	10699	14203	14203					0.12171489507659317
FIWENIHTL	9	Unmodified	_FIWENIHTL_					0	0	0		nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST	nc|ENSG00000151914|Q03001|DST	nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	A375_MHC_IP_R2	2	587.2083740234375	2	586.808574	1171.60259	-0.58549	-0.00034357	-0.086328	-5.0658E-05	-0.67181	-0.00039423	586.8083958327888	106.23	0.61036	106.99	106.78	107.39	0.75977					15	11	2	0	0	0	0.57806	1	40211	40211		39.95	39.95	1	1831500			14583	5934	10622	10700	14204	14204					0.023657183686509597
FIWKPGLW	8	Unmodified	_FIWKPGLW_					0	0	0		THSD7B|p.P48L|1|0.25|ENSG00000144229|chr2:137056423-137056423|C/T|missense_variant	THSD7B|p.P48L|1|0.25|ENSG00000144229|chr2:137056423-137056423|C/T|missense_variant	THSD7B|p.P48L|1|0.25|ENSG00000144229|chr2:137056423-137056423|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	523.7252807617188	2	523.794738	1045.57492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.39	1	118.05	117.55	118.55	0.65962								0	0	0	0.16876	1	44414	44414		17.087	0	1				14584	29341	10623	10701	14205	14205					0.053958598990675455
FIWWVILSLTW	11	Unmodified	_FIWWVILSLTW_					0	0	0		FZD8|p.S411F|1|0.51|ENSG00000177283|chr10:35640198-35640198|G/A|missense_variant	FZD8|p.S411F|1|0.51|ENSG00000177283|chr10:35640198-35640198|G/A|missense_variant	FZD8|p.S411F|1|0.51|ENSG00000177283|chr10:35640198-35640198|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	488.4693603515625	3	488.607708	1462.80129	-0.28307	-0.00013831	1.0116	0.00049426	0.7285	0.00035595	488.9426547081156	61.509	0.35616	61.509	61.432	61.788	0					10	6	2	0	0	0	1.0002	1	22284	22284		2.8433	1.5136	1	1723300			14585	14028	10624	10702	14206	14206					0.08840558947508725
FIWWVILSLTW	11	Unmodified	_FIWWVILSLTW_					0	0	0		FZD8|p.S411F|1|0.51|ENSG00000177283|chr10:35640198-35640198|G/A|missense_variant	FZD8|p.S411F|1|0.51|ENSG00000177283|chr10:35640198-35640198|G/A|missense_variant	FZD8|p.S411F|1|0.51|ENSG00000177283|chr10:35640198-35640198|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	488.607708	1462.80129	-0.86759	-0.00042391	0.77171	0.00037706	-0.095877	-4.6846E-05	488.6082117818853	60.733	0.30435	61.478	61.364	61.668	0.74503	-0.015725	-0.00014453	NaN	2.8433	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1273000			14586	14028	10624	10702							0.08840558947508725
FIYEAPTP	8	Unmodified	_FIYEAPTP_					0	0	0		nc|ENSG00000196748|Q6UWE3-2|CLPSL2	nc|ENSG00000196748|Q6UWE3-2|CLPSL2	nc|ENSG00000196748|Q6UWE3-2|CLPSL2	MSMS	A375_MHC_IP_R2	2	469.1711730957031	2	469.236919	936.459284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.263	1	18.866	18.366	19.366	0.60308								0	0	0	0.16876	1	5422	5422		0.69038	0	1				14587	14840	10625	10703	14207	14207					-0.01148708742425697
FIYEGSSDFSC	11	Unmodified	_FIYEGSSDFSC_					0	0	0		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000512029.1_1_5:118832263-118835290:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MSMS	A375_MHC_IP_R2	2	627.847900390625	2	627.752804	1253.49105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.924	1	84.664	84.164	85.164	0.73962								0	0	0	0.1624	1	31900	31900		6.2058	0.47393	1				14588	4532	10626	10704	14208	14208					-0.12555128841427177
FIYVMPNFSY	10	Unmodified	_FIYVMPNFSY_					0	0	0		ENSG00000183303|ENST00000329434|OR5P2	ENSG00000183303|ENST00000329434|OR5P2	ENSG00000183303|ENST00000329434|OR5P2	MSMS	A375_MHC_IP_R2	2	640.7300415039062	2	640.804642	1279.59473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.357	1	57.107	56.607	57.607	0.75015								0	0	0	0.15308	1	21303	21303		10.824	0.67336	1				14589	8482	10627	10705	14209	14209					-0.033881769431218345
FKCLSSKIF	9	Unmodified	_FKCLSSKIF_					0	0	0		nc|ENSG00000184313|Q68CQ1-4|MROH7;nc|ENSG00000184313|Q68CQ1-8|MROH7;nc|ENSG00000184313|Q68CQ1-2|MROH7;nc|ENSG00000184313|Q68CQ1-1|MROH7;nc|ENSG00000184313|Q68CQ1-9|MROH7;ENSG00000184313|ENST00000421030|MROH7	nc|ENSG00000184313|Q68CQ1-4|MROH7	nc|ENSG00000184313|Q68CQ1-4|MROH7	MSMS	A375_MHC_IP_R1	1	358.265869140625	3	358.200172	1071.57869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.359	1	51.359	50.859	51.859	0								0	0	0	0.15486	1	18229	18229		4.1895	0	1				14590	8570	10628	10706	14210	14210					0.04576161610634699
FKDEKEGPIT	10	Unmodified	_FKDEKEGPIT_					0	0	0		ENST00000477947.1_1_12:46287367-46287505:+|nuORF	ENST00000477947.1_1_12:46287367-46287505:+|nuORF	ENST00000477947.1_1_12:46287367-46287505:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	582.70068359375	2	582.300778	1162.587	-0.6455	-0.00037588	0.0013846	8.0624E-07	-0.64412	-0.00037507	582.3009275654305	38.832	0.51258	39.606	39.351	39.863	0.77451					12	9	2	0	0	0	0.83355	1	14358	14358		22.736	1.1993	1	2432200			14591	12450	10629	10707	14211	14211					0.012213870609457445
FKDIRSYRYWD	11	Unmodified	_FKDIRSYRYWD_					0	0	0		ENSG00000120053|ENST00000370508|GOT1;nc|ENSG00000120053|P17174-2|GOT1	ENSG00000120053|ENST00000370508|GOT1	ENSG00000120053|ENST00000370508|GOT1	MSMS	A375_MHC_IP_R2	2	774.9697265625	2	774.883333	1547.75211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133	1	133.17	132.67	133.67	0.16487								0	0	0	0.16312	1	52325	52325		2.4985	0.21571	1				14592	3645	10630	10708	14212	14212					0.00014618920590692142
FKEKISEVP	9	Unmodified	_FKEKISEVP_					0	0	0		tr|U7SSK8|U7SSK8_FUSNUNADH:flavinoxidoreductase/NADHoxidaseN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01301PE=4SV=1	tr|U7SSK8|U7SSK8_FUSNUNADH:flavinoxidoreductase/NADHoxidaseN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01301PE=4SV=1	tr|U7SSK8|U7SSK8_FUSNUNADH:flavinoxidoreductase/NADHoxidaseN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01301PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	539.20263671875	2	538.802957	1075.59136	-0.85445	-0.00046038	1.343	0.00072362	0.48856	0.00026324	538.8032685135134	66.352	0.40729	66.352	66.173	66.58	0					12	7	2	0	0	0	0.60917	1	24079	24079		25.399	1.3787	1	2061100			14593	29638	10631	10709	14213	14213					0.05658896274530889
FKFPGRQKI	9	Unmodified	_FKFPGRQKI_					0	0	0		ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000491035.5_1_X:153628724-153629192:+|nuORF	ENSG00000165496|ENST00000298283|RPL10L;ENST00000491035.5_1_X:153628724-153629192:+|nuORF	ENSG00000165496|ENST00000298283|RPL10L	MULTI-MSMS	A375_MHC_IP_R1	1	374.62567138671875	3	374.225709	1119.6553	0.31233	0.00011688	-0.020947	-7.8387E-06	0.29138	0.00010904	374.22568184074953	34.129	0.91003	34.129	33.798	34.708	0					65	17	5	0	0	0	0.13845	2	11171	11171;11280		43.772	16.639	1	196270000			14594	5679;12653	10632	10710	14214;14215	14214					0.10025721222132233
FKFPGRQKI	9	Unmodified	_FKFPGRQKI_					0	0	0		ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000491035.5_1_X:153628724-153629192:+|nuORF	ENSG00000165496|ENST00000298283|RPL10L;ENST00000491035.5_1_X:153628724-153629192:+|nuORF	ENSG00000165496|ENST00000298283|RPL10L	MULTI-MSMS	A375_MHC_IP_R1	1	561.2349853515625	2	560.834926	1119.6553	-0.4938	-0.00027694	0.35015	0.00019637	-0.14366	-8.0568E-05	560.8351323445899	34.129	0.50651	34.129	33.898	34.405	0					20	9	3	0	0	0	0.21241	1	11213	11213		47.749	17.112	1	7107800			14595	5679;12653	10632	10710	14216	14216					0.10025721222132233
FKFPGRQKI	9	Unmodified	_FKFPGRQKI_					0	0	0		ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000491035.5_1_X:153628724-153629192:+|nuORF	ENSG00000165496|ENST00000298283|RPL10L;ENST00000491035.5_1_X:153628724-153629192:+|nuORF	ENSG00000165496|ENST00000298283|RPL10L	MULTI-MSMS	A375_MHC_IP_R2	2	374.9454650878906	3	374.225709	1119.6553	0.16624	6.221E-05	-0.2417	-9.0449E-05	-0.075458	-2.8238E-05	374.2255995837613	33.157	1.0666	33.909	33.584	34.651	0.75225					68	20	6	0	0	0	0.050868	3	11889	11795;11889;12047		63.961	41.302	1	168860000			14596	5679;12653	10632	10710	14217;14218;14219	14218					0.10025721222132233
FKFPGRQKI	9	Unmodified	_FKFPGRQKI_					0	0	0		ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000491035.5_1_X:153628724-153629192:+|nuORF	ENSG00000165496|ENST00000298283|RPL10L;ENST00000491035.5_1_X:153628724-153629192:+|nuORF	ENSG00000165496|ENST00000298283|RPL10L	MULTI-SECPEP	A375_MHC_IP_R2	2	561.2345581054688	2	560.834926	1119.6553	-0.80121	-0.00044935	0.058882	3.3023E-05	-0.74233	-0.00041632	560.8350167520166	33.118	0.45909	33.871	33.686	34.146	0.75225					15	8	3	0	0	0	0.36673	1	11849	11849		58.679	20.705	1	5162800			14597	5679;12653	10632	10710	14220	14220					0.10025721222132233
FKGGRCWRF	9	Unmodified	_FKGGRCWRF_					0	0	0		ENSG00000271447|ENST00000605424|MMP28	ENSG00000271447|ENST00000605424|MMP28	ENSG00000271447|ENST00000605424|MMP28	MULTI-MSMS	A375_MHC_IP_R2	2	578.6927490234375	2	578.795278	1155.576	-0.44732	-0.0002589	0.30814	0.00017835	-0.13918	-8.0556E-05	578.7958676144664	37.703	0.56408	38.478	38.175	38.739	0.77451					17	10	2	0	0	0	0.65721	1	13889	13889		10.824	0.75	1	2950200			14598	9986	10633	10711	14221	14221					0.004437509963281627
FKGIFYYFSLI	11	Unmodified	_FKGIFYYFSLI_					0	0	0		CD207|p.N205I|1|0.59|ENSG00000116031|chr2:70833003-70833003|T/A|missense_variant	CD207|p.N205I|1|0.59|ENSG00000116031|chr2:70833003-70833003|T/A|missense_variant	CD207|p.N205I|1|0.59|ENSG00000116031|chr2:70833003-70833003|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	699.8087768554688	2	699.378832	1396.74311	-0.84235	-0.00058912	-1.0966	-0.00076691	-1.9389	-0.001356	699.3783336938013	131.42	0.80898	131.42	131.02	131.83	0					33	15	3	0	0	0	0.7362	1	50614	50614		2.9952	2.9952	1	4606000			14599	330	10634	10712	14222	14222					0.06060877302229528
FKHERRRF	8	Unmodified	_FKHERRRF_					0	0	0			REV__ENST00000266880.11_1_12:133417602-133417977:-|nuORF	REV__ENST00000266880.11_1_12:133417602-133417977:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	391.9562683105469	3	392.556341	1174.64719	-0.17696	-6.9466E-05	-0.854	-0.00033524	-1.031	-0.00040471	392.8902326436957	27.262	0.30582	27.94	27.741	28.047	0.67857					8	5	2	0	0	0	0.972	1	9302	9302		2.9952	0.91127	1	1428900	+		14600	23260	10635	10713	14223	14223					0.0668558702534483
FKHRHKTKRKK	11	Unmodified	_FKHRHKTKRKK_					0	0	0			REV__ENSG00000284484|ENST00000640173|CPHXL2	REV__ENSG00000284484|ENST00000640173|CPHXL2	MULTI-SECPEP	A375_MHC_IP_R1	1	498.7211608886719	3	498.647782	1492.92152	-0.73665	-0.00036733	0.87047	0.00043406	0.13382	6.6728E-05	498.64810100335967	147.42	0.043289	147.42	147.4	147.44	0					7	4	2	0	0	0	1.0015	1	56341	56341		0.094841	0.011491	1	59508	+		14601	23003	10636	10714	14224	14224					0.1947740478447031
FKHWIEWFSYR	11	Unmodified	_FKHWIEWFSYR_					0	0	0		LRTM2|p.M213I|1|0.38|ENSG00000166159|chr12:1831506-1831506|G/A|missense_variant	LRTM2|p.M213I|1|0.38|ENSG00000166159|chr12:1831506-1831506|G/A|missense_variant	LRTM2|p.M213I|1|0.38|ENSG00000166159|chr12:1831506-1831506|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	799.79638671875	2	799.898786	1597.78302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.113	1	79.113	78.613	79.613	0								0	0	0	0.16312	1	28876	28876		2.4985	1.0166	1				14602	14325	10637	10715	14225	14225					0.00803817025484932
FKIYKKHN	8	Unmodified	_FKIYKKHN_					0	0	0			REV__ENST00000520776.5_1_17:45405719-45473360:+|nuORF	REV__ENST00000520776.5_1_17:45405719-45473360:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	359.2791442871094	3	359.87831	1076.6131	-0.61001	-0.00021953	0.39926	0.00014369	-0.21075	-7.5845E-05	359.8783140984772	59.169	0.35583	59.917	59.742	60.098	0.74714					9	6	2	0	0	0	0.972	1	22455	22455		6.7232	0	1	608140	+		14603	21522	10638	10716	14226	14226					0.07785745813771427
FKKFKEHLKQM	11	Unmodified	_FKKFKEHLKQM_					0	0	0		NLRP4|p.R24K|1|0.53|ENSG00000160505|chr19:55852151-55852151|G/A|missense_variant	NLRP4|p.R24K|1|0.53|ENSG00000160505|chr19:55852151-55852151|G/A|missense_variant	NLRP4|p.R24K|1|0.53|ENSG00000160505|chr19:55852151-55852151|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	489.34503173828125	3	488.611235	1462.81188	-0.52789	-0.00025793	-0.54374	-0.00026568	-1.0716	-0.00052361	488.6107525726313	132.71	1.0164	132.71	132.08	133.1	0					61	19	4	0	0	0	0.73807	1	51013	51013		1.2148	0.20126	1	20175000			14604	15005	10639	10717	14227	14227					0.09898218330272357
FKKIRRKREFR	11	Unmodified	_FKKIRRKREFR_					0	0	0		ENST00000465873.5_1_9:138834060-138837107:-|nuORF;ENST00000471163.1_1_9:138834060-138839712:-|nuORF;ENSG00000130560|ENST00000371756|UBAC1	ENST00000465873.5_1_9:138834060-138837107:-|nuORF	ENST00000465873.5_1_9:138834060-138837107:-|nuORF	MSMS	A375_MHC_IP_R1	1	782.4797973632812	2	782.488968	1562.96338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.38	1	126.38	125.88	126.88	0								0	0	0	0.16355	1	48265	48265		0.26902	0.26902	1				14605	4256	10640	10718	14228	14228					0.20441960473021936
FKLFRLVVCRQ	11	Unmodified	_FKLFRLVVCRQ_					0	0	0			REV__ENSG00000127080|ENST00000287996|IPPK	REV__ENSG00000127080|ENST00000287996|IPPK	MULTI-MSMS	A375_MHC_IP_R1	1	705.315673828125	2	704.915924	1407.8173	-0.9565	-0.00067425	0.72103	0.00050826	-0.23547	-0.00016599	704.9164596176569	142.29	0.7084	142.29	141.83	142.54	0					38	13	4	0	0	0	0.73809	1	54484	54484		1.1933	0.79263	1	6039300	+		14606	18410	10641	10719	14229	14229					0.1296994191277463
FKLFRLVVCRQ	11	Unmodified	_FKLFRLVVCRQ_					0	0	0			REV__ENSG00000127080|ENST00000287996|IPPK	REV__ENSG00000127080|ENST00000287996|IPPK	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	704.915924	1407.8173	-0.9565	-0.00067425	0.72103	0.00050826	-0.23547	-0.00016599	704.9164596176569	142.29	0.7084	142.29	141.83	142.54	0	-0.032002	5.2605E-05	NaN	1.1933	38	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6039300	+		14607	18410	10641	10719							0.1296994191277463
FKLFRLVVCRQ	11	Unmodified	_FKLFRLVVCRQ_					0	0	0			REV__ENSG00000127080|ENST00000287996|IPPK	REV__ENSG00000127080|ENST00000287996|IPPK	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	704.915924	1407.8173	-0.53296	-0.00037569	0.64537	0.00045493	0.11241	7.924E-05	704.9163435039858	142.32	0.7075	142.36	141.82	142.53	0.030731	0.032002	-5.4061E-05	NaN	1.1933	40	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7551500	+		14608	18410	10641	10719							0.1296994191277463
FKLKLRYVP	9	Unmodified	_FKLKLRYVP_					0	0	0			REV__TOP3A|p.N830Tfs*52|1|0.27|ENSG00000177302|chr17:18278015-18278015|G/-|frameshift_variant	REV__TOP3A|p.N830Tfs*52|1|0.27|ENSG00000177302|chr17:18278015-18278015|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	387.9367980957031	3	388.581493	1162.72265	0.43546	0.00016921	0.0017822	6.9254E-07	0.43724	0.00016991	388.58149592250294	42.866	0.40568	42.866	42.689	43.095	0					13	7	2	0	0	0	0.81858	1	14956	14956		0.26902	0.033176	1	2063100	+		14609	21452	10642	10720	14230	14230					0.1477975143304775
FKLKRRRRAE	10	Unmodified	_FKLKRRRRAE_					0	0	0		ENST00000495275.1_1_1:173793119-173793596:-|nuORF	ENST00000495275.1_1_1:173793119-173793596:-|nuORF	ENST00000495275.1_1_1:173793119-173793596:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	680.82568359375	2	680.425836	1358.83712	-0.44775	-0.00030466	0.51507	0.00035046	0.067321	4.5807E-05	680.4258017517565	149.17	3.3686	149.19	146.64	150.01	0.018707					505	213	4	0	0	0	0.7272	1	57523	57523		0.35063	0.35063	1	11871000			14610	12703	10643	10721	14231	14231					0.1720545396772195
FKLKRRRRAE	10	Unmodified	_FKLKRRRRAE_					0	0	0		ENST00000495275.1_1_1:173793119-173793596:-|nuORF	ENST00000495275.1_1_1:173793119-173793596:-|nuORF	ENST00000495275.1_1_1:173793119-173793596:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	680.425836	1358.83712	-0.98447	-0.00066986	0.93941	0.0006392	-0.045062	-3.0662E-05	680.4260170898924	149.18	3.7083	149.18	146.3	150	0	-0.0070285	0.00033367	NaN	0.35063	506	222	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13548000			14611	12703	10643	10721							0.1720545396772195
FKLRKDKW	8	Unmodified	_FKLRKDKW_					0	0	0			REV__GABRA1|p.E100K|1|0.06|ENSG00000022355|chr5:161873159-161873159|G/A|missense_variant	REV__GABRA1|p.E100K|1|0.06|ENSG00000022355|chr5:161873159-161873159|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	374.6258850097656	3	374.225709	1119.6553	0.31233	0.00011688	-0.020947	-7.8387E-06	0.29138	0.00010904	374.22568184074953	34.129	0.91003	34.129	33.798	34.708	0					65	17	5	0	0	0	0.77189	1	11426	11426		14.405	3.6059	1	196270000	+		14612	26658	10644	10722	14232	14232					0.10025721222109496
FKLSSLRSL	9	Unmodified	_FKLSSLRSL_					0	0	0			REV__nc|ENSG00000198863|Q96C34-2|RUNDC1	REV__nc|ENSG00000198863|Q96C34-2|RUNDC1	MULTI-SECPEP	A375_MHC_IP_R1	1	526.2185668945312	2	525.818941	1049.62333	-0.17881	-9.4024E-05	-0.16923	-8.8985E-05	-0.34804	-0.00018301	525.8187835547061	45.444	0.55463	45.444	45.183	45.738	0					24	10	3	0	0	0	0.20451	1	15885	15885		49.554	16.769	1	12495000	+		14613	22434	10645	10723	14233	14233					0.10050308748327552
FKMRLPHGF	9	Unmodified	_FKMRLPHGF_					0	0	0		nc|ENSG00000154655|Q8NA19|L3MBTL4;ENSG00000154655|ENST00000317931|L3MBTL4;nc|ENSG00000154655|Q8NA19-2|L3MBTL4	nc|ENSG00000154655|Q8NA19|L3MBTL4	nc|ENSG00000154655|Q8NA19|L3MBTL4	MULTI-SECPEP	A375_MHC_IP_R1	1	567.174560546875	2	566.807854	1131.60115	-0.28953	-0.00016411	1.1335	0.00064246	0.84394	0.00047835	566.8085238426061	63.043	0.61423	63.043	62.66	63.274	0					22	11	2	0	0	0	0.71541	1	22723	22723		16.942	5.302	1	4045600			14614	6099	10646	10724	14234	14234					0.04061805798914975
FKNINNSGLIA	11	Unmodified	_FKNINNSGLIA_					0	0	0		tr|U7T2L6|U7T2L6_FUSNUDNAgyrasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gyrAPE=3SV=1	tr|U7T2L6|U7T2L6_FUSNUDNAgyrasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gyrAPE=3SV=1	tr|U7T2L6|U7T2L6_FUSNUDNAgyrasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gyrAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	397.9231872558594	3	397.555784	1189.64552	-0.1301	-5.172E-05	-0.17777	-7.0673E-05	-0.30786	-0.00012239	397.555943661987	20.033	0.45605	20.033	19.776	20.232	0					12	8	2	0	0	0	0.72585	1	5094	5094		12.856	1.957	1	1871300			14615	29939	10647	10725	14235	14235					0.05828488426095646
FKPVKMKPV	9	Unmodified	_FKPVKMKPV_					0	0	0			REV__AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	REV__AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	538.6814575195312	2	537.33063	1072.64671	-1.0915	-0.00058651	-0.41131	-0.00022101	-1.5028	-0.00080752	537.8314153450891	72.093	1.7241	72.827	72.213	73.937	0.73421					59	33	3	0	0	0	0.72985	1	27243	27243		4.3292	4.3292	1	3802600	+		14616	15345	10648	10726	14236	14236					0.11329031261311684
FKRQIIQRRKN	11	Unmodified	_FKRQIIQRRKN_					0	0	0		nc|ENSG00000166762|Q96P56-2|CATSPER2;ENSG00000166762|ENST00000396879|CATSPER2;nc|ENSG00000166762|Q96P56-3|CATSPER2	nc|ENSG00000166762|Q96P56-2|CATSPER2	nc|ENSG00000166762|Q96P56-2|CATSPER2	MULTI-MSMS	A375_MHC_IP_R1	1	744.3564453125	2	743.957501	1485.90045	-0.88217	-0.0006563	-0.51076	-0.00037998	-1.3929	-0.0010363	743.9569312434733	148.96	2.4189	148.96	147.52	149.94	0					231	90	4	0	0	0	0.73891	1	56882	56882		1.1933	1.1933	1	2755000			14617	7109	10649	10727	14237	14237					0.17693394684965824
FKRQIIQRRKN	11	Unmodified	_FKRQIIQRRKN_					0	0	0		nc|ENSG00000166762|Q96P56-2|CATSPER2;ENSG00000166762|ENST00000396879|CATSPER2;nc|ENSG00000166762|Q96P56-3|CATSPER2	nc|ENSG00000166762|Q96P56-2|CATSPER2	nc|ENSG00000166762|Q96P56-2|CATSPER2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	743.957501	1485.90045	-0.66222	-0.00049267	-0.69509	-0.00051712	-1.3573	-0.0010098	743.956810633456	148.95	2.3292	148.97	147.57	149.9	0.018692	0.0037565	-0.00013871	NaN	1.1933	264	91	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2513700			14618	7109	10649	10727							0.17693394684965824
FKRRNHARKQR	11	Unmodified	_FKRRNHARKQR_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;NCOR1|p.T481*|1|0.32|ENSG00000141027|chr17:16137360-16137379|TAATTCTCATTTTTCTTGGT/-|frameshift_variant;nc|ENSG00000141027|O75376-3|NCOR1;NCOR1|p.E872Lfs*46|1|0.34|ENSG00000141027|chr17:16101326-16101327|-/CGCCTGGGGTGAGGTCTGCTATCAAG|frameshift_variant	nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-MSMS	A375_MHC_IP_R2	2	749.3427124023438	2	748.942716	1495.87088	-0.6779	-0.00050771	0.012527	9.3816E-06	-0.66538	-0.00049833	748.9426007407613	142.42	0.60941	142.45	142.03	142.64	0.030731					30	11	4	0	0	0	0.73902	1	55609	55609		0.30703	0	1	4586200			14619	5209	10650	10728	14238	14238					0.14277875459470124
FKRYEEELEIN	11	Unmodified	_FKRYEEELEIN_					0	0	0		nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46	nc|ENSG00000145833|Q7L014|DDX46	nc|ENSG00000145833|Q7L014|DDX46	MSMS	A375_MHC_IP_R2	2	490.6531982421875	3	490.580546	1468.71981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.603	1	61.348	60.848	61.848	0.74503								0	0	0	0.16247	1	22948	22948		5.8681	1.7515	1				14620	5586	10651	10729	14239	14239					0.004197867269795097
FKTLKHAG	8	Unmodified	_FKTLKHAG_					0	0	0		ENST00000480503.5_1_7:45008844-45011824:-|nuORF	ENST00000480503.5_1_7:45008844-45011824:-|nuORF	ENST00000480503.5_1_7:45008844-45011824:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	451.6661376953125	2	451.266345	900.518136	-0.34095	-0.00015386	0.52755	0.00023806	0.1866	8.4204E-05	451.2666621000659	27.002	0.70362	27.002	26.728	27.432	0					22	13	2	0	0	0	0.68328	1	8157	8157		39.957	19.504	1	4992300			14621	12499	10652	10730	14240	14240					0.06389812342570167
FKTLKHAG	8	Unmodified	_FKTLKHAG_					0	0	0		ENST00000480503.5_1_7:45008844-45011824:-|nuORF	ENST00000480503.5_1_7:45008844-45011824:-|nuORF	ENST00000480503.5_1_7:45008844-45011824:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	451.66619873046875	2	451.266345	900.518136	-0.66217	-0.00029882	0.5225	0.00023579	-0.13967	-6.3028E-05	451.26667908105384	26.431	0.60901	27.091	26.805	27.414	0.65992					20	11	2	0	0	0	0.68328	1	8940	8940		39.957	19.504	1	3250300			14622	12499	10652	10730	14241	14241					0.06389812342570167
FKWNFYYSP	9	Unmodified	_FKWNFYYSP_					0	0	0		APOB|p.S4020F|1|0.2|ENSG00000084674|chr2:21004297-21004297|G/A|missense_variant	APOB|p.S4020F|1|0.2|ENSG00000084674|chr2:21004297-21004297|G/A|missense_variant	APOB|p.S4020F|1|0.2|ENSG00000084674|chr2:21004297-21004297|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	626.2110595703125	2	626.295299	1250.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.939	1	50.694	50.194	51.194	0.75406								0	0	0	0.15411	1	18774	18774		14.838	4.7643	1				14623	161	10653	10731	14242	14242					-0.03921970522674201
FKYCCRNY	8	Unmodified	_FKYCCRNY_					0	0	0			REV__ENSG00000214654|ENST00000689072|B3GALT9	REV__ENSG00000214654|ENST00000689072|B3GALT9	MULTI-MSMS	A375_MHC_IP_R1	1	549.6903076171875	2	548.73878	1095.46301	-0.56781	-0.00031158	0.76546	0.00042004	0.19765	0.00010846	548.7381292293155	47.326	1.4239	47.326	46.647	48.071	0					88	27	4	0	0	0	0.77488	2	16655	16655;16690		13.508	2.684	1	46958000	+		14624	22655	10654	10732	14243;14244	14243					-0.08090685511865559
FLAAWEAGN	9	Unmodified	_FLAAWEAGN_					0	0	0		PCDHA4|p.L20F|1|0.3|ENSG00000204967|chr5:140807245-140807245|C/T|missense_variant	PCDHA4|p.L20F|1|0.3|ENSG00000204967|chr5:140807245-140807245|C/T|missense_variant	PCDHA4|p.L20F|1|0.3|ENSG00000204967|chr5:140807245-140807245|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	489.650146484375	2	489.737617	977.460681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.52	1	76.52	76.02	77.02	0								0	0	0	0.13805	1	27895	27895		30.225	1.738	1				14625	15125	10655	10733	14245	14245					-0.028950746536679617
FLADDLGGL	9	Unmodified	_FLADDLGGL_					0	0	0		ENST00000466409.1_1_9:95874378-95875386:+|nuORF;ENST00000468781.5_1_9:95858594-95875386:+|nuORF;ENSG00000165233|ENST00000375464|CARD19	ENST00000466409.1_1_9:95874378-95875386:+|nuORF	ENST00000466409.1_1_9:95874378-95875386:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	920.8701782226562	1	920.472374	919.465098	0.053721	4.9449E-05	-0.51609	-0.00047505	-0.46237	-0.0004256	920.472244253812	117.87	0.81107	117.87	117.51	118.32	0					27	15	3	0	0	0	0.01139	1	43320	43320		104.8	40.563	1	12245000			14626	6928	10656	10734	14246	14246					0.002143897692462815
FLADDLGGL	9	Unmodified	_FLADDLGGL_					0	0	0		ENST00000466409.1_1_9:95874378-95875386:+|nuORF;ENST00000468781.5_1_9:95858594-95875386:+|nuORF;ENSG00000165233|ENST00000375464|CARD19	ENST00000466409.1_1_9:95874378-95875386:+|nuORF	ENST00000466409.1_1_9:95874378-95875386:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	920.8719482421875	1	920.472374	919.465098	-0.18126	-0.00016684	0.74343	0.00068431	0.56217	0.00051746	920.473288953082	117.07	0.6097	117.73	117.38	117.99	0.65962					26	11	3	0	0	0	0.023756	1	44216	44216		92.822	38.049	1	17843000			14627	6928	10656	10734	14247	14247					0.002143897692462815
FLADIVQKL	9	Unmodified	_FLADIVQKL_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.L2956*|1|0.6|ENSG00000151835|chr13:23335009-23335009|A/-|frameshift_variant;SACS|p.P3025Hfs*21|1|0.32|ENSG00000151835|chr13:23334784-23334802|AGTAAATTGTCAAAAAATG/-|frameshift_variant	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	A375_MHC_IP_R1	1	524.2158813476562	2	523.815867	1045.61718	-0.41233	-0.00021599	-0.24459	-0.00012812	-0.65692	-0.00034411	523.8158902416932	104.97	0.86031	104.97	104.69	105.55	0					39	16	4	0	0	0	0.046478	1	38522	38522		82.529	36.508	1	7324300			14628	5930	10657	10735	14248	14248					0.0961979051680828
FLADIVQKL	9	Unmodified	_FLADIVQKL_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.L2956*|1|0.6|ENSG00000151835|chr13:23335009-23335009|A/-|frameshift_variant;SACS|p.P3025Hfs*21|1|0.32|ENSG00000151835|chr13:23334784-23334802|AGTAAATTGTCAAAAAATG/-|frameshift_variant	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	A375_MHC_IP_R2	2	524.2159423828125	2	523.815867	1045.61718	-0.48863	-0.00025595	-0.64343	-0.00033704	-1.1321	-0.00059299	523.8157131838902	104.01	0.91404	104.78	104.5	105.41	0.76308					42	17	3	0	0	0	0.05021	1	39357	39357		78.728	23.954	1	8197600			14629	5930	10657	10735	14249	14249					0.0961979051680828
FLADPSAFVAA	11	Unmodified	_FLADPSAFVAA_					0	0	0		ENST00000496593.5_1_11:61404148-61405105:+|nuORF;nc|ENSG00000089157|P05388-2|RPLP0;nc|ENSG00000213553|Q8NHW5|RPLP0P6;ENSG00000089157|ENST00000392514|RPLP0	ENST00000496593.5_1_11:61404148-61405105:+|nuORF	ENST00000496593.5_1_11:61404148-61405105:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	555.1863403320312	2	554.787307	1107.56006	-0.64759	-0.00035928	0.23216	0.0001288	-0.41543	-0.00023048	554.7872448487954	117.38	0.65787	118.04	117.68	118.34	0.65962					19	12	2	0	0	0	0.073284	1	44455	44455		74.929	52.193	1	10237000			14630	12730	10658	10736	14250	14250					0.010583232404542287
FLAEDALNTV	10	Unmodified	_FLAEDALNTV_					0	0	0		nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;ENST00000484556.1_1_6:30866836-30867070:+|nuORF	nc|ENSG00000204580|Q08345-2|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	MULTI-SECPEP	A375_MHC_IP_R1	1	547.1823120117188	2	546.782222	1091.54989	-0.49483	-0.00027056	0.46397	0.00025369	-0.030857	-1.6872E-05	546.7824073333097	102.97	1.2214	102.97	102.61	103.83	0					49	23	3	0	0	0	0.026461	1	37794	37794		131.27	77.435	1	5303900			14631	9460	10659	10737	14251	14251					0.007777155151643456
FLAEDALNTV	10	Unmodified	_FLAEDALNTV_					0	0	0		nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;ENST00000484556.1_1_6:30866836-30867070:+|nuORF	nc|ENSG00000204580|Q08345-2|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	MULTI-SECPEP	A375_MHC_IP_R2	2	547.1817016601562	2	546.782222	1091.54989	-0.77618	-0.0004244	0.47906	0.00026194	-0.29712	-0.00016246	546.7823881596672	102.24	0.91276	103	102.67	103.58	0.76428					38	17	3	0	0	0	0.026461	1	38705	38705		144.35	51.697	1	6134000			14632	9460	10659	10737	14252	14252					0.007777155151643456
FLAEDLLAAA	10	Unmodified	_FLAEDLLAAA_					0	0	0			REV__ENST00000510707.1_1_4:85165918-85166545:+|nuORF	REV__ENST00000510707.1_1_4:85165918-85166545:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	517.68115234375	2	517.281857	1032.54916	-0.75367	-0.00038986	-0.44597	-0.00023069	-1.1996	-0.00062055	517.2815675743724	121.33	0.55898	121.77	121.52	122.08	0.44488					16	10	2	0	0	0	0.082834	1	46409	46409		67.344	12.57	1	20763000	+		14633	25605	10660	10738	14253	14253					0.03418920866147346
FLAEEGFYKF	10	Unmodified	_FLAEEGFYKF_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF	ENSG00000134910|ENST00000392708|STT3A	ENSG00000134910|ENST00000392708|STT3A	MULTI-MSMS	A375_MHC_IP_R1	1	625.7460327148438	2	625.808239	1249.60193	-0.55309	-0.00034613	0.17693	0.00011072	-0.37617	-0.00023541	625.8084511569904	99.906	0.90883	99.906	99.574	100.48	0					37	17	3	0	0	0	0.018806	1	36734	36734		86.332	48.156	1	5590700			14634	4626	10661	10739	14254	14254					-0.012891210710677115
FLAEEGFYKF	10	Unmodified	_FLAEEGFYKF_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF	ENSG00000134910|ENST00000392708|STT3A	ENSG00000134910|ENST00000392708|STT3A	MULTI-MSMS	A375_MHC_IP_R2	2	626.2078247070312	2	625.808239	1249.60193	-0.63579	-0.00039788	0.29094	0.00018207	-0.34485	-0.00021581	625.8082979576495	99.098	1.1177	99.857	99.505	100.62	0.75977					33	21	3	0	0	0	0.0040472	1	37567	37567		100.09	54.391	1	5436600			14635	4626	10661	10739	14255	14255					-0.012891210710677115
FLAEEQAGL	9	Unmodified	_FLAEEQAGL_					0	0	0		nc|ENSG00000146063|Q8WV44-2|TRIM41;ENSG00000146063|ENST00000315073|TRIM41;nc|ENSG00000146063|Q8WV44-4|TRIM41;ENST00000508930.1_1_5:180650987-180660460:+|nuORF;ENST00000515223.1_1_5:180659598-180660003:+|nuORF;ENST00000515834.1_1_5:180657548-180660003:+|nuORF	nc|ENSG00000146063|Q8WV44-2|TRIM41	nc|ENSG00000146063|Q8WV44-2|TRIM41	MULTI-MSMS	A375_MHC_IP_R2	2	489.650146484375	2	489.250557	976.486562	-0.55179	-0.00026996	-0.091165	-4.4602E-05	-0.64296	-0.00031457	489.2504315941945	75.822	0.66048	76.563	76.282	76.943	0.74052					23	12	3	0	0	0	0.018546	1	28768	28768		85.272	10.343	1	2747700			14636	5601	10662	10740	14256	14256					-0.002622252020501037
FLAEHPNVTL	10	Unmodified	_FLAEHPNVTL_					0	0	0		ENSG00000243811|ENST00000216099|APOBEC3D	ENSG00000243811|ENST00000216099|APOBEC3D	ENSG00000243811|ENST00000216099|APOBEC3D	MULTI-SECPEP	A375_MHC_IP_R1	1	571.2059326171875	2	570.806031	1139.59751	-0.23072	-0.0001317	-0.0086624	-4.9445E-06	-0.23938	-0.00013664	570.8060168854861	70.593	0.767	70.593	70.341	71.108	0					28	14	3	0	0	0	0.24721	1	25666	25666		65.474	25.524	1	2886200			14637	9815	10663	10741	14257	14257					0.0332941450603812
FLANIGTSV	9	Unmodified	_FLANIGTSV_					0	0	0		ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	461.655517578125	2	461.255643	920.496732	-0.35711	-0.00016472	-0.12031	-5.5493E-05	-0.47742	-0.00022021	461.25556427731567	91.345	0.60715	91.345	91.048	91.655	0					20	11	2	0	0	0	0.25276	1	33571	33571		34.102	5.6156	1	1589100			14638	6248	10664	10742	14258	14258					0.033303825232110285
FLANIGTSV	9	Unmodified	_FLANIGTSV_					0	0	0		ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	461.65521240234375	2	461.255643	920.496732	-0.35865	-0.00016543	-0.01962	-9.0499E-06	-0.37827	-0.00017448	461.2555650662704	90.502	0.55904	91.236	91.007	91.566	0.7345					18	10	2	0	0	0	0.11296	1	34456	34456		48.346	12.302	1	2191700			14639	6248	10664	10742	14259	14259					0.033303825232110285
FLANIGTSV	9	Unmodified	_FLANIGTSV_					0	0	0		ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	922.25341796875	1	921.504009	920.496732	-0.21266	-0.00019597	-0.22556	-0.00020786	-0.43822	-0.00040382	921.5039085689591	90.502	0.35451	91.236	91.058	91.413	0.7345					10	6	2	0	0	0	0.027983	1	34471	34471		103.75	25.599	1	2539400			14640	6248	10664	10742	14260	14260					0.033303825232110285
FLANIGTSV	9	Unmodified	_FLANIGTSV_					0	0	0		ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	921.504009	920.496732	-0.2072	-0.00019094	0.0076333	7.0341E-06	-0.19957	-0.0001839	921.504061128573	91.309	0.50627	91.309	91.048	91.554	0	0.036468	0.00010824	NaN	103.75	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2212400			14641	6248	10664	10742							0.033303825232110285
FLANVSTV	8	Unmodified	_FLANVSTV_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	A375_MHC_IP_R2	2	850.8334350585938	1	850.466895	849.459619	-0.67115	-0.00057079	0.26118	0.00022213	-0.40996	-0.00034866	850.4666800261309	75.687	0.35784	76.428	76.282	76.64	0.74052					11	6	2	0	0	0	0.6817	1	28682	28682		40.449	14.107	1	2304800		+	14642	579	10665	10743	14261	14261					0.028867109774409982
FLANVSTV	8	Unmodified	_FLANVSTV_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MATCH	A375_MHC_IP_R1	1		1	850.466895	849.459619	-0.39913	-0.00033945	-0.16263	-0.00013831	-0.56176	-0.00047776	850.4665209287424	76.576	0.40413	76.576	76.319	76.724	0	0.074238	-9.4975E-05	NaN	40.449	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1594000		+	14643	579	10665	10743							0.028867109774409982
FLANVSTVL	9	Unmodified	_FLANVSTVL_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-SECPEP	A375_MHC_IP_R1	1	482.1450500488281	2	482.279118	962.543683	0.038841	1.8732E-05	-0.065565	-3.1621E-05	-0.026725	-1.2889E-05	482.27901727443555	112.83	0.55502	112.83	112.59	113.14	0					21	10	3	0	0	0	0.39388	1	41428	41428		39.957	11.47	1	2445500		+	14644	579	10666	10744	14262	14262					0.06091242074330694
FLANVSTVLT	10	Unmodified	_FLANVSTVLT_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-SECPEP	A375_MHC_IP_R1	1	533.2023315429688	2	532.802957	1063.59136	-0.43084	-0.00022955	0.012686	6.7594E-06	-0.41815	-0.00022279	532.8028697759394	106.78	0.45993	106.78	106.62	107.08	0					14	8	2	0	0	0	0.49165	1	39225	39225		27.629	9.4825	1	1356100		+	14645	579	10667	10745	14263	14263					0.062108962745242025
FLANVSTVLT	10	Unmodified	_FLANVSTVLT_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-SECPEP	A375_MHC_IP_R2	2	533.2025756835938	2	532.802957	1063.59136	-0.72725	-0.00038748	-1.0682	-0.00056917	-1.7955	-0.00095665	532.8024334612612	106.04	0.50871	106.8	106.58	107.09	0.75977					15	9	2	0	0	0	0.60589	1	40107	40107		27.629	3.6082	1	1468500		+	14646	579	10667	10745	14264	14264					0.062108962745242025
FLAPGTLLGV	10	Unmodified	_FLAPGTLLGV_					0	0	0		ENSG00000198753|ENST00000361971|PLXNB3;nc|ENSG00000198753|Q9ULL4-2|PLXNB3	ENSG00000198753|ENST00000361971|PLXNB3	ENSG00000198753|ENST00000361971|PLXNB3	MULTI-MSMS	A375_MHC_IP_R2	2	494.6143798828125	2	494.29731	986.580068	-0.53604	-0.00026496	-1.1975	-0.0005919	-1.7335	-0.00085686	494.2969129422012	129.17	0.30301	129.41	129.31	129.62	0.23947					7	5	2	0	0	0	0.009532	1	50790	50790		92.822	18.399	1	1848200			14647	9317	10668	10746	14265	14265					0.08624118971056305
FLASESLIKQI	11	Unmodified	_FLASESLIKQI_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-SECPEP	A375_MHC_IP_R1	1	625.2635498046875	2	624.863546	1247.71254	-0.69072	-0.00043161	0.34978	0.00021857	-0.34094	-0.00021304	624.8637054722078	94.566	0.61397	94.566	94.291	94.905	0					23	11	3	0	0	0	0.00080361	1	34757	34757		166.77	91.008	1	4526900			14648	9318	10669	10747	14266	14266					0.09859098917195297
FLASESLIKQI	11	Unmodified	_FLASESLIKQI_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-SECPEP	A375_MHC_IP_R2	2	625.2625122070312	2	624.863546	1247.71254	-0.62824	-0.00039256	-0.49236	-0.00030766	-1.1206	-0.00070022	624.8632254798238	93.716	0.80914	94.461	94.211	95.02	0.74474					20	15	2	0	0	0	0.00096206	1	35618	35618		154.75	78.992	1	3792100			14649	9318	10669	10747	14267	14267					0.09859098917195297
FLASNDPST	9	Unmodified	_FLASNDPST_					0	0	0		nc|ENSG00000266074|Q9P281|BAHCC1	nc|ENSG00000266074|Q9P281|BAHCC1	nc|ENSG00000266074|Q9P281|BAHCC1	MULTI-SECPEP	A375_MHC_IP_R1	1	475.6346130371094	2	476.224539	950.434526	-0.47915	-0.00022818	-0.6377	-0.00030369	-1.1169	-0.00053187	476.22435201305086	61.987	0.35869	61.987	61.839	62.198	0					9	6	2	0	0	0	0.28475	1	22344	22344		32.305	0	1	663210			14650	14934	10670	10748	14268	14268					-0.04267388615812706
FLASNDPST	9	Unmodified	_FLASNDPST_					0	0	0		nc|ENSG00000266074|Q9P281|BAHCC1	nc|ENSG00000266074|Q9P281|BAHCC1	nc|ENSG00000266074|Q9P281|BAHCC1	MULTI-MATCH	A375_MHC_IP_R2	2		2	476.224539	950.434526	-0.84576	-0.00040277	0.081488	3.8807E-05	-0.76428	-0.00036397	476.2245366625975	61.282	0.503	62.027	61.819	62.322	0.74503	0.019855	0.00031566	NaN	32.305	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	901530			14651	14934	10670	10748							-0.04267388615812706
FLASRGKG	8	Unmodified	_FLASRGKG_					0	0	0			REV__TRIM29|p.E64K|1|0.18|ENSG00000137699|chr11:120137842-120137842|C/T|missense_variant	REV__TRIM29|p.E64K|1|0.18|ENSG00000137699|chr11:120137842-120137842|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	418.13592529296875	2	418.24287	834.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.793	1	63.535	63.035	64.035	0.74263								0	0	0	0.16876	1	23804	23804		2.5775	0	1		+		14652	28900	10671	10749	14269	14269					0.04732952791437128
FLAVEVQNQ	9	Unmodified	_FLAVEVQNQ_					0	0	0		ENSG00000171209|ENST00000304954|CSN3	ENSG00000171209|ENST00000304954|CSN3	ENSG00000171209|ENST00000304954|CSN3	MULTI-SECPEP	A375_MHC_IP_R2	2	524.2159423828125	2	524.277106	1046.53966	-0.47475	-0.0002489	3.4997	0.0018348	3.025	0.0015859	524.7807149346633	104.01	0.30399	104.78	104.55	104.85	0.76308					7	5	2	0	0	0	0.69504	1	39357	39357		18.135	4.2289	1	2007300			14653	7582	10672	10750	14270	14270					0.01825152580613576
FLAVIAYDRY	10	Unmodified	_FLAVIAYDRY_					0	0	0		OR7G1|p.M118I|1|0.27|ENSG00000161807|chr19:9115410-9115410|C/T|missense_variant	OR7G1|p.M118I|1|0.27|ENSG00000161807|chr19:9115410-9115410|C/T|missense_variant	OR7G1|p.M118I|1|0.27|ENSG00000161807|chr19:9115410-9115410|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	616.2291870117188	2	615.829506	1229.64446	-0.93676	-0.00057689	-0.02363	-1.4552E-05	-0.96039	-0.00059144	615.829335027347	61.527	0.75623	62.272	61.97	62.726	0.74504					25	14	2	0	0	0	0.77204	1	23322	23322		27.629	4.4804	1	2431600			14654	15095	10673	10751	14271	14271					0.03882274057173163
FLAVLTEAML	10	Unmodified	_FLAVLTEAML_					0	0	0		ENST00000351365.7_1_18:77663978-77709700:-|nuORF;nc|ENSG00000122490|Q8N2U9-2|SLC66A2;ENSG00000122490|ENST00000397778|SLC66A2	ENST00000351365.7_1_18:77663978-77709700:-|nuORF	ENST00000351365.7_1_18:77663978-77709700:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	554.2294921875	2	554.309561	1106.60457	-0.76721	-0.00042527	-0.42168	-0.00023374	-1.1889	-0.00065901	554.3092664409141	123.48	0.85957	123.86	123.48	124.34	0.3766					32	16	3	0	0	0	0.43117	1	47660	47660		32.305	0	1	52798000			14655	3785	10674	10752	14272	14272					0.05553011062261248
FLAVTLTRY	9	Unmodified	_FLAVTLTRY_					0	0	0			REV__ENST00000583186.1_1_17:62083967-62084084:-|nuORF	REV__ENST00000583186.1_1_17:62083967-62084084:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	542.681396484375	2	542.313492	1082.61243	-0.47669	-0.00025851	-0.064925	-3.521E-05	-0.54161	-0.00029372	542.3133953041504	47.668	0.75631	47.668	47.416	48.173	0					39	14	4	0	0	0	0.58047	1	16921	16921		15.847	4.2069	1	9470200	+		14656	17547	10675	10753	14273	14273					0.07442906374035374
FLAWVLIIFL	10	Unmodified	_FLAWVLIIFL_					0	0	0			REV__tr|U7SYI7|U7SYI7_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00894PE=3SV=1	REV__tr|U7SYI7|U7SYI7_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00894PE=3SV=1	MSMS	A375_MHC_IP_R2	2	617.8916015625	2	617.883553	1233.75255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.661	1	77.402	76.902	77.902	0.74052								0	0	0	0.15585	1	29107	29107		1.8442	0	1		+		14657	28632	10676	10754	14274	14274					0.14502690378435545
FLCASVFLV	9	Unmodified	_FLCASVFLV_					0	0	0			REV__ENSG00000170881|ENST00000303545|RNF139	REV__ENSG00000170881|ENST00000303545|RNF139	MULTI-MSMS	A375_MHC_IP_R1	1	499.6710510253906	2	499.772614	997.530675	-0.52257	-0.00026117	1.7052	0.00085221	1.1826	0.00059104	499.77351986990413	80.499	0.65847	80.499	80.086	80.744	0					15	12	2	0	0	0	0.67372	1	29371	29371		9.3474	0	1	1171700	+		14658	21028	10677	10755	14275	14275					0.03181087690597906
FLCFCFYIFFF	11	Unmodified	_FLCFCFYIFFF_					0	0	0			REV__ENST00000512600.1_1_5:112919975-112927944:+|nuORF	REV__ENST00000512600.1_1_5:112919975-112927944:+|nuORF	MSMS	A375_MHC_IP_R1	1	499.4600524902344	3	499.564234	1495.67087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.854	1	52.854	52.354	53.354	0								0	0	0	0.16301	1	18817	18817		3.0723	0.22898	1		+		14659	25626	10678	10756	14276	14276					-0.057134963673888706
FLCGVHYLY	9	Unmodified	_FLCGVHYLY_					0	0	0		ENSG00000140675|ENST00000330498|SLC5A2	ENSG00000140675|ENST00000330498|SLC5A2	ENSG00000140675|ENST00000330498|SLC5A2	MULTI-MSMS	A375_MHC_IP_R1	1	557.7238159179688	2	557.773145	1113.53174	-0.48136	-0.00026849	0.2265	0.00012634	-0.25486	-0.00014215	557.7734459603274	98.151	0.81405	98.151	97.845	98.659	0					34	15	3	0	0	0	0.33325	1	35988	35988		28.173	7.302	1	4477100			14660	5175	10679	10757	14277	14277					-0.020486979405177408
FLCNVERS	8	Unmodified	_FLCNVERS_					0	0	0		ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	MULTI-SECPEP	A375_MHC_IP_R1	1	483.4721984863281	2	484.236927	966.459301	-0.061661	-2.9859E-05	0.42645	0.0002065	0.36479	0.00017665	484.2401395443844	42.842	0.30356	42.842	42.689	42.993	0					9	5	3	0	0	0	0.92867	1	14848	14848		24.021	12.38	1	865570			14661	6921	10680	10758	14278	14278					-0.025270320140862168
FLDANVKESY	10	Unmodified	_FLDANVKESY_					0	0	0		nc|ENSG00000289758|Q92902-2|HPS1;nc|ENSG00000289758|Q92902-4|HPS1;ENSG00000107521|ENST00000361490|HPS1	nc|ENSG00000289758|Q92902-2|HPS1	nc|ENSG00000289758|Q92902-2|HPS1	MULTI-SECPEP	A375_MHC_IP_R1	1	593.69287109375	2	593.292953	1184.57135	-0.16028	-9.5091E-05	-0.045429	-2.6953E-05	-0.2057	-0.00012204	593.293042731284	54.156	0.55464	54.156	53.809	54.364	0					15	10	2	0	0	0	0.61782	1	19323	19323		42.835	17.844	1	3231900			14662	2741	10681	10759	14279	14279					-0.013548994561006111
FLDANVKESY	10	Unmodified	_FLDANVKESY_					0	0	0		nc|ENSG00000289758|Q92902-2|HPS1;nc|ENSG00000289758|Q92902-4|HPS1;ENSG00000107521|ENST00000361490|HPS1	nc|ENSG00000289758|Q92902-2|HPS1	nc|ENSG00000289758|Q92902-2|HPS1	MULTI-SECPEP	A375_MHC_IP_R2	2	592.9934692382812	2	593.292953	1184.57135	-1.1032	-0.0006545	0.82719	0.00049076	-0.27598	-0.00016374	593.2929037739433	53.472	0.61413	54.223	53.995	54.609	0.75105					21	11	3	0	0	0	0.46518	1	20205	20205		53.47	37.622	1	4037500			14663	2741	10681	10759	14280	14280					-0.013548994561006111
FLDASGAKLDY	11	Unmodified	_FLDASGAKLDY_					0	0	0		nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF	nc|ENSG00000082153|Q7L1Q6-2|BZW1	nc|ENSG00000082153|Q7L1Q6-2|BZW1	MULTI-MSMS	A375_MHC_IP_R1	1	600.7008056640625	2	600.300778	1198.587	-0.24542	-0.00014733	0.030308	1.8194E-05	-0.21511	-0.00012913	600.3007720712216	71.15	2.5868	71.15	70.8	73.386	0					102	50	4	0	0	0	0.00010348	3	25802	25802;26022;26353		135.87	82.47	1	89478000			14664	1753	10682	10760	14281;14282;14283	14281					-0.004346129390341957
FLDASGAKLDY	11	Unmodified	_FLDASGAKLDY_					0	0	0		nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF	nc|ENSG00000082153|Q7L1Q6-2|BZW1	nc|ENSG00000082153|Q7L1Q6-2|BZW1	MULTI-MSMS	A375_MHC_IP_R2	2	600.6998291015625	2	600.300778	1198.587	-0.50502	-0.00030317	0.022118	1.3277E-05	-0.4829	-0.00028989	600.3007503245707	70.541	2.1766	71.276	70.997	73.174	0.73421					87	42	4	0	0	0	0.00035307	2	26688	26688;26905		115.82	64.192	1	118910000			14665	1753	10682	10760	14284;14285	14284					-0.004346129390341957
FLDATLTSV	9	Unmodified	_FLDATLTSV_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-MSMS	A375_MHC_IP_R1	1	968.3590087890625	1	966.514239	965.506963	0.21107	0.00020401	-0.38075	-0.000368	-0.16968	-0.000164	966.5137387114174	105.42	1.426	105.42	104.99	106.42	0					61	27	3	0	0	0	0.05754	1	38750	38750		61.357	6.5839	1	23816000			14666	1008	10683	10761	14286	14286					0.022829454577731667
FLDATLTSV	9	Unmodified	_FLDATLTSV_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MSMS	A375_MHC_IP_R1	1	484.1600341796875	2	483.760758	965.506963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.35	1	105.35	104.85	105.85	0								0	0	0	0.027043	1	38675	38675		74.423	10.186	1				14667	1008	10683	10761	14287	14287					0.022829454577731667
FLDATLTSV	9	Unmodified	_FLDATLTSV_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-MSMS	A375_MHC_IP_R2	2	484.16064453125	2	483.760758	965.506963	-0.52776	-0.00025531	0.15608	7.5506E-05	-0.37168	-0.0001798	483.76062816995466	104.61	0.91679	105.38	104.95	105.87	0.76308					29	17	3	0	0	0	0.067501	1	39532	39532		57.471	17.514	1	4921000			14668	1008	10683	10761	14288	14288					0.022829454577731667
FLDATLTSV	9	Unmodified	_FLDATLTSV_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-MATCH	A375_MHC_IP_R2	2		1	966.514239	965.506963	-0.017666	-1.7074E-05	-0.23275	-0.00022495	-0.25041	-0.00024203	966.5139351263902	104.62	1.6813	105.38	104.95	106.63	0.76308	-0.017605	7.3316E-05	NaN	61.357	68	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28099000			14669	1008	10683	10761							0.022829454577731667
FLDAVREV	8	Unmodified	_FLDAVREV_					0	0	0		ENST00000486326.5_1_7:107220736-107234551:+|nuORF;ENSG00000075790|ENST00000005259|BCAP29;nc|ENSG00000075790|Q9UHQ4-2|BCAP29	ENST00000486326.5_1_7:107220736-107234551:+|nuORF	ENST00000486326.5_1_7:107220736-107234551:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	475.16070556640625	2	474.761092	947.507631	-0.73448	-0.0003487	0.56565	0.00026855	-0.16883	-8.0156E-05	474.761253264241	66.722	0.6631	66.722	66.428	67.091	0					21	12	3	0	0	0	0.7011	1	24172	24172		34.402	0.29928	1	1920200			14670	1622	10684	10762	14289	14289					0.03177784897479796
FLDAVREV	8	Unmodified	_FLDAVREV_					0	0	0		ENST00000486326.5_1_7:107220736-107234551:+|nuORF;ENSG00000075790|ENST00000005259|BCAP29;nc|ENSG00000075790|Q9UHQ4-2|BCAP29	ENST00000486326.5_1_7:107220736-107234551:+|nuORF	ENST00000486326.5_1_7:107220736-107234551:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	475.1607360839844	2	474.761092	947.507631	-0.74865	-0.00035543	0.19757	9.38E-05	-0.55107	-0.00026163	474.7609947110766	65.916	0.76393	66.654	66.273	67.037	0.73811					24	14	2	0	0	0	0.5161	1	24983	24983		53.833	5.4869	1	3224500			14671	1622	10684	10762	14290	14290					0.03177784897479796
FLDAVREV	8	Unmodified	_FLDAVREV_					0	0	0		ENST00000486326.5_1_7:107220736-107234551:+|nuORF;ENSG00000075790|ENST00000005259|BCAP29;nc|ENSG00000075790|Q9UHQ4-2|BCAP29	ENST00000486326.5_1_7:107220736-107234551:+|nuORF	ENST00000486326.5_1_7:107220736-107234551:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	474.761092	947.507631	-0.73448	-0.0003487	0.56565	0.00026855	-0.16883	-8.0156E-05	474.761253264241	66.722	0.6631	66.722	66.428	67.091	0	0.034196	9.6158E-05	NaN	53.833	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1920200			14672	1622	10684	10762							0.03177784897479796
FLDAYAEHKL	10	Unmodified	_FLDAYAEHKL_					0	0	0		nc|ENSG00000177628|P04062-4|GBA1;nc|ENSG00000177628|P04062-5|GBA1;nc|ENSG00000177628|P04062-2|GBA1;ENSG00000177628|ENST00000368373|GBA1;nc|ENSG00000177628|P04062-3|GBA1;ENST00000459805.5_1_1:155184905-155186549:-|nuORF;ENST00000486197.5_1_1:155184905-155187358:-|nuORF;ENST00000566701.5_1_1:155184905-155187601:-|nuORF;ENST00000473223.5_1_1:155184463-155187072:-|nuORF	nc|ENSG00000177628|P04062-4|GBA1	nc|ENSG00000177628|P04062-4|GBA1	MULTI-SECPEP	A375_MHC_IP_R1	1	403.6110534667969	3	402.876634	1205.60807	-0.19021	-7.663E-05	0.2672	0.00010765	0.076994	3.1019E-05	402.8767313083745	54.113	0.50434	54.113	53.809	54.314	0					15	9	2	0	0	0	0.92295	1	19351	19351		15.538	9.8066	1	1406100			14673	8096	10685	10763	14291	14291					0.013493971604702892
FLDCMQQF	8	Carbamidomethyl (C)	_FLDC(Carbamidomethyl (C))MQQF_	FLDC(1)MQQF		FLDC(60)MQQF		0	1	0		ENSG00000196289|ENST00000419583|BECN2	ENSG00000196289|ENST00000419583|BECN2	ENSG00000196289|ENST00000419583|BECN2	MULTI-MSMS	A375_MHC_IP_R1	1	545.1571044921875	2	544.73062	1087.44669	-0.53254	-0.00029009	-0.10082	-5.4918E-05	-0.63335	-0.00034501	544.7307195367379	54.745	1.2712	54.745	54.415	55.687	0					72	24	4	0	0	0	0.28202	3	19780	19514;19730;19780		60.39	20.432	1	49537000			14674	9023	10686	10764	14292;14293;14294	14294	45				-0.0935381146864529
FLDCMQQF	8	Carbamidomethyl (C)	_FLDC(Carbamidomethyl (C))MQQF_	FLDC(1)MQQF		FLDC(67)MQQF		0	1	0		ENSG00000196289|ENST00000419583|BECN2	ENSG00000196289|ENST00000419583|BECN2	ENSG00000196289|ENST00000419583|BECN2	MULTI-MSMS	A375_MHC_IP_R2	2	545.1295776367188	2	544.73062	1087.44669	-1.1225	-0.00061148	-0.092888	-5.0599E-05	-1.2154	-0.00066208	544.7307623233967	54.088	1.3751	54.839	54.404	55.779	0.75105					73	26	5	0	0	0	0.19889	3	20363	20363;20369;20572		67.344	21.323	1	42556000			14675	9023	10686	10764	14295;14296;14297	14295	45				-0.0935381146864529
FLDDFESKY	9	Unmodified	_FLDDFESKY_					0	0	0		nc|ENSG00000171475|Q8TF74-2|WIPF2;ENSG00000171475|ENST00000323571|WIPF2;ENST00000494757.5_1_17:38375603-38434474:+|nuORF	nc|ENSG00000171475|Q8TF74-2|WIPF2	nc|ENSG00000171475|Q8TF74-2|WIPF2	MULTI-MSMS	A375_MHC_IP_R1	1	582.6661987304688	2	582.266404	1162.51826	-0.1251	-7.2844E-05	-0.13646	-7.9457E-05	-0.26157	-0.0001523	582.2662675810116	78.067	2.1859	78.067	77.336	79.522	0					112	42	5	0	0	0	0.019126	5	28421	28420;28421;28597;28624;28868		84.522	53.254	1	97759000			14676	7604	10687	10765	14298;14299;14300;14301;14302	14299					-0.05650277238760282
FLDDFESKY	9	Unmodified	_FLDDFESKY_					0	0	0		nc|ENSG00000171475|Q8TF74-2|WIPF2;ENSG00000171475|ENST00000323571|WIPF2;ENST00000494757.5_1_17:38375603-38434474:+|nuORF	nc|ENSG00000171475|Q8TF74-2|WIPF2	nc|ENSG00000171475|Q8TF74-2|WIPF2	MULTI-MSMS	A375_MHC_IP_R2	2	582.6661987304688	2	582.266404	1162.51826	-0.38148	-0.00022212	0.023546	1.371E-05	-0.35793	-0.00020841	582.2663333712561	77.345	2.5901	78.088	77.354	79.944	0.74293					133	50	6	0	0	0	0.019126	5	29526	29526;29616;29655;29761;29888		84.522	53.254	1	96265000			14677	7604	10687	10765	14303;14304;14305;14306;14307	14303					-0.05650277238760282
FLDDFESKY	9	Unmodified	_FLDDFESKY_					0	0	0		nc|ENSG00000171475|Q8TF74-2|WIPF2;ENSG00000171475|ENST00000323571|WIPF2;ENST00000494757.5_1_17:38375603-38434474:+|nuORF	nc|ENSG00000171475|Q8TF74-2|WIPF2	nc|ENSG00000171475|Q8TF74-2|WIPF2	MSMS	A375_MHC_IP_R2	2	582.2138061523438	2	582.266404	1162.51826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.724	1	80.469	79.969	80.969	0.74474								0	0	0	0.14656	1	30259	30259		27.223	7.9662	1				14678	7604	10687	10765	14308	14308					-0.05650277238760282
FLDDGHTFNY	10	Unmodified	_FLDDGHTFNY_					0	0	0		nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	MULTI-MSMS	A375_MHC_IP_R1	1	615.1671752929688	2	614.767103	1227.51965	-0.34715	-0.00021342	0.076505	4.7033E-05	-0.27064	-0.00016638	614.76711107173	75.489	2.2758	75.489	75.11	77.386	0					121	44	4	0	0	0	0.0049421	4	27658	27449;27469;27658;27875		132.38	94.228	1	68843000			14679	1929	10688	10766	14309;14310;14311;14312	14311					-0.08500643149977805
FLDDGHTFNY	10	Unmodified	_FLDDGHTFNY_					0	0	0		nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	MULTI-MSMS	A375_MHC_IP_R2	2	615.1663818359375	2	614.767103	1227.51965	-0.65493	-0.00040263	0.20891	0.00012843	-0.44603	-0.0002742	614.7671989020284	74.837	1.8283	75.574	75.214	77.042	0.73751					103	35	4	0	0	0	0.0049421	3	28567	28567;28633;28856		121.53	75.513	1	69151000			14680	1929	10688	10766	14313;14314;14315	14313					-0.08500643149977805
FLDDNQIVT	9	Unmodified	_FLDDNQIVT_					0	0	0		ENST00000461893.5_1_1:1720336-1724757:-|nuORF;nc|ENSG00000078369|P62873-2|GNB1;ENSG00000078369|ENST00000378609|GNB1	ENST00000461893.5_1_1:1720336-1724757:-|nuORF	ENST00000461893.5_1_1:1720336-1724757:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1661376953125	2	532.766571	1063.51859	-0.77089	-0.00041071	0.029533	1.5734E-05	-0.74136	-0.00039497	532.7664531265038	80.935	0.81161	80.935	80.34	81.151	0					31	15	3	0	0	0	0.16676	1	29533	29533		58.679	16.839	1	2493700			14681	12193	10689	10767	14316	14316					-0.010628575189002731
FLDDSKSLV	9	Unmodified	_FLDDSKSLV_					0	0	0		nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1	nc|ENSG00000008710|P98161-2|PKD1	nc|ENSG00000008710|P98161-2|PKD1	MULTI-SECPEP	A375_MHC_IP_R2	2	512.6710205078125	2	512.27149	1022.52843	-0.77703	-0.00039805	0.054585	2.7963E-05	-0.72244	-0.00037009	512.2715411977515	67.257	0.45636	67.993	67.698	68.155	0.73631					15	8	2	0	0	0	0.16595	1	25462	25462		61.602	23.426	1	2207600			14682	962	10690	10768	14317	14317					0.018063304864767815
FLDDVVHSL	9	Unmodified	_FLDDVVHSL_					0	0	0		ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C	ENSG00000171988|ENST00000399262|JMJD1C	ENSG00000171988|ENST00000399262|JMJD1C	MULTI-MSMS	A375_MHC_IP_R1	1	523.673583984375	2	522.771657	1043.52876	-0.49072	-0.00025654	0.20264	0.00010593	-0.28808	-0.0001506	522.7715302444394	98.967	1.1162	98.967	98.607	99.723	0					59	21	4	0	0	0	0.091096	1	36319	36319		52.268	24.64	1	10673000			14683	7668	10691	10769	14318	14318					0.008737502063468128
FLDEECPNY	9	Unmodified	_FLDEECPNY_					0	0	0			REV__ENSG00000257093|ENST00000536163|DENND11	REV__ENSG00000257093|ENST00000536163|DENND11	MSMS	A375_MHC_IP_R2	2	565.1697387695312	2	565.228965	1128.44338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.359	1	64.099	63.599	64.599	0.74022								0	0	0	0.15486	1	24019	24019		8.5933	0	1		+		14684	22888	10692	10770	14319	14319					-0.11570783041634058
FLDEEYEV	8	Unmodified	_FLDEEYEV_					0	0	0		nc|ENSG00000186642|O00408-5|PDE2A;nc|ENSG00000186642|O00408-2|PDE2A;nc|ENSG00000186642|O00408-4|PDE2A;nc|ENSG00000186642|O00408-3|PDE2A;ENSG00000186642|ENST00000334456|PDE2A	nc|ENSG00000186642|O00408-5|PDE2A	nc|ENSG00000186642|O00408-5|PDE2A	MSMS	A375_MHC_IP_R1	1	522.191162109375	2	522.23203	1042.44951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.046	1	99.046	98.546	99.546	0								0	0	0	0.16876	1	36387	36387		10.183	0.83596	1				14685	8768	10693	10771	14320	14320					-0.07001941538487699
FLDEKSGSFV	10	Unmodified	_FLDEKSGSFV_					0	0	0		ENSG00000156804|ENST00000517956|FBXO32;ENST00000521719.5_1_8:124526414-124553254:-|nuORF;nc|ENSG00000156804|Q969P5-2|FBXO32;ENST00000520511.1_1_8:124539464-124553254:-|nuORF	ENSG00000156804|ENST00000517956|FBXO32	ENSG00000156804|ENST00000517956|FBXO32	MULTI-MSMS	A375_MHC_IP_R1	1	565.1820678710938	2	564.782222	1127.54989	-0.64239	-0.00036281	0.40748	0.00023014	-0.23491	-0.00013268	564.7823951379935	68.34	1.32	68.34	68.006	69.326	0					56	25	3	0	0	0	0.010122	2	24740	24740;24959		104.48	46.762	1	12723000			14686	6210	10694	10772	14321;14322	14321					-0.008782844847928573
FLDEKSGSFV	10	Unmodified	_FLDEKSGSFV_					0	0	0		ENSG00000156804|ENST00000517956|FBXO32;ENST00000521719.5_1_8:124526414-124553254:-|nuORF;nc|ENSG00000156804|Q969P5-2|FBXO32;ENST00000520511.1_1_8:124539464-124553254:-|nuORF	ENSG00000156804|ENST00000517956|FBXO32	ENSG00000156804|ENST00000517956|FBXO32	MULTI-MSMS	A375_MHC_IP_R2	2	565.1817626953125	2	564.782222	1127.54989	-0.43649	-0.00024652	-0.16607	-9.3791E-05	-0.60256	-0.00034031	564.7820839688334	67.552	0.96798	68.289	67.951	68.919	0.73631					37	18	3	0	0	0	0.028865	1	25565	25565		101.54	43.821	1	13170000			14687	6210	10694	10772	14323	14323					-0.008782844847928573
FLDEKTHEL	9	Unmodified	_FLDEKTHEL_					0	0	0		ENSG00000129317|ENST00000344862|PUS7L	ENSG00000129317|ENST00000344862|PUS7L	ENSG00000129317|ENST00000344862|PUS7L	MULTI-SECPEP	A375_MHC_IP_R1	1	565.7581787109375	2	566.287671	1130.56079	-0.66915	-0.00037893	0.66742	0.00037795	-0.0017235	-9.76E-07	566.2879631828769	38.345	1.018	38.345	38.118	39.136	0					39	19	4	0	0	0	0.051108	1	12972	12972		59.052	39.691	1	41065000			14688	4187	10695	10773	14324	14324					0.0007311788947390596
FLDEKTHEL	9	Unmodified	_FLDEKTHEL_					0	0	0		ENSG00000129317|ENST00000344862|PUS7L	ENSG00000129317|ENST00000344862|PUS7L	ENSG00000129317|ENST00000344862|PUS7L	MULTI-MSMS	A375_MHC_IP_R2	2	566.6871337890625	2	566.287671	1130.56079	-0.74993	-0.00042467	0.39112	0.00022149	-0.3588	-0.00020318	566.2878261195592	37.478	0.66405	38.249	37.968	38.632	0.7709					38	12	4	0	0	0	0.01185	1	13696	13696		93.938	40.105	1	39142000			14689	4187	10695	10773	14325	14325					0.0007311788947390596
FLDEKTHEL	9	Unmodified	_FLDEKTHEL_					0	0	0		ENSG00000129317|ENST00000344862|PUS7L	ENSG00000129317|ENST00000344862|PUS7L	ENSG00000129317|ENST00000344862|PUS7L	MULTI-SECPEP	A375_MHC_IP_R2	2	377.6087341308594	3	377.860873	1130.56079	-0.18143	-6.8556E-05	0.34471	0.00013025	0.16328	6.1697E-05	377.8609759511257	37.499	2.0949	38.27	37.968	40.063	0.7709					89	40	5	0	0	0	0.29257	1	13770	13770		53.317	20.419	1	99475000			14690	4187	10695	10773	14326	14326					0.0007311788947390596
FLDEKTHEL	9	Unmodified	_FLDEKTHEL_					0	0	0		ENSG00000129317|ENST00000344862|PUS7L	ENSG00000129317|ENST00000344862|PUS7L	ENSG00000129317|ENST00000344862|PUS7L	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	377.860873	1130.56079	0.091994	3.4761E-05	0.51574	0.00019488	0.60773	0.00022964	377.86103503655437	38.341	1.8804	38.341	38.067	39.948	0	0.035109	9.1235E-05	NaN	53.317	85	36	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93430000			14691	4187	10695	10773							0.0007311788947390596
FLDEPTNHL	9	Unmodified	_FLDEPTNHL_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2;ENST00000465687.1_1_3:88367908-88368169:+|nuORF	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-SECPEP	A375_MHC_IP_R1	1	543.666748046875	2	543.266739	1084.51892	-0.61666	-0.00033501	0.10204	5.5437E-05	-0.51462	-0.00027957	543.2667607491815	58.049	1.779	58.049	57.669	59.448	0					67	34	4	0	0	0	0.027055	1	20786	20786		110.67	55.901	1	26221000			14692	1120	10696	10774	14327	14327					-0.019954377990416106
FLDEPTNHL	9	Unmodified	_FLDEPTNHL_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2;ENST00000465687.1_1_3:88367908-88368169:+|nuORF	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-MSMS	A375_MHC_IP_R2	2	543.6661987304688	2	543.266739	1084.51892	-1.1857	-0.00064416	0.31762	0.00017255	-0.8681	-0.00047161	543.266863887107	57.279	1.7291	58.028	57.457	59.187	0.74894					66	33	4	0	0	0	0.017012	1	21606	21606		107.19	52.413	1	25676000			14693	1120	10696	10774	14328	14328					-0.019954377990416106
FLDERTPRL	9	Unmodified	_FLDERTPRL_					0	0	0		nc|ENSG00000104381|Q8TB36-2|GDAP1;ENSG00000104381|ENST00000220822|GDAP1	nc|ENSG00000104381|Q8TB36-2|GDAP1	nc|ENSG00000104381|Q8TB36-2|GDAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	383.2808532714844	3	382.880379	1145.61931	0.30433	0.00011652	-0.38873	-0.00014884	-0.084399	-3.2315E-05	382.8807912272013	50.382	1.0719	50.382	49.642	50.713	0					32	20	3	0	0	0	0.49205	1	17865	17865		26.021	5.4398	1	3750000			14694	2506	10697	10775	14329	14329					0.052322192545943835
FLDERTPRL	9	Unmodified	_FLDERTPRL_					0	0	0		nc|ENSG00000104381|Q8TB36-2|GDAP1;ENSG00000104381|ENST00000220822|GDAP1	nc|ENSG00000104381|Q8TB36-2|GDAP1	nc|ENSG00000104381|Q8TB36-2|GDAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	383.28887939453125	3	382.880379	1145.61931	-0.38919	-0.00014901	1.2076	0.00046237	0.81843	0.00031336	382.88068196272906	49.594	0.70822	50.352	49.894	50.602	0.75737					21	13	2	0	0	0	0.31606	1	18618	18618		30.703	3.0746	1	3067400			14695	2506	10697	10775	14330	14330					0.052322192545943835
FLDESRSTQY	10	Unmodified	_FLDESRSTQY_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	A375_MHC_IP_R1	1	623.6907958984375	2	623.290942	1244.56733	-0.61271	-0.00038189	0.17104	0.0001066	-0.44167	-0.00027529	623.2911273189145	41.906	2.7462	41.906	41.47	44.216	0					164	53	5	0	0	0	0.0019766	3	14857	14636;14857;15086		139.78	99.825	1	405990000			14696	8474	10698	10776	14331;14332;14333	14332					-0.045169889497856275
FLDESRSTQY	10	Unmodified	_FLDESRSTQY_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	A375_MHC_IP_R2	2	623.6905517578125	2	623.290942	1244.56733	-0.98849	-0.00061611	0.14504	9.0403E-05	-0.84345	-0.00052571	623.2910877125682	41.146	2.6436	41.92	41.59	44.233	0.77451					152	51	6	0	0	0	0.0022429	2	15424	15424;15662		139.38	99.421	1	389840000			14697	8474	10698	10776	14334;14335	14334					-0.045169889497856275
FLDESRSTQYM	11	Unmodified	_FLDESRSTQYM_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	A375_MHC_IP_R2	2	689.2102661132812	2	688.811184	1375.60782	-1.0135	-0.00069812	-0.29951	-0.00020631	-1.313	-0.00090443	688.8110630849197	57.497	0.35498	58.246	57.968	58.323	0.74894					11	6	2	0	0	0	0.14152	1	21740	21740		62.869	44.722	1	2688400			14698	8474	10699	10777	14336	14336					-0.06496390621691717
FLDESRSTQYM	11	Unmodified	_FLDESRSTQYM_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MATCH	A375_MHC_IP_R1	1		2	688.811184	1375.60782	-0.65643	-0.00045216	0.38453	0.00026487	-0.2719	-0.00018729	688.8114961362629	58.049	0.40462	58.049	57.923	58.328	0	-0.098736	0.00050034	NaN	62.869	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2274500			14699	8474	10699	10777							-0.06496390621691717
FLDESRSTQYM	11	Oxidation (M)	_FLDESRSTQYM(Oxidation (M))_		FLDESRSTQYM(1)		FLDESRSTQYM(67)	0	0	1		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-SECPEP	A375_MHC_IP_R2	2	697.208251953125	2	696.808642	1391.60273	-0.9263	-0.00064545	0.21152	0.00014739	-0.71479	-0.00049807	696.8085694668001	38.959	0.40941	39.734	39.504	39.914	0.77451					16	7	3	0	0	0	0.18098	1	14405	14405		66.683	41.692	1	2999100			14700	8474	10699	10778	14337	14337		407			-0.07740694484300548
FLDESRSTQYM	11	Oxidation (M)	_FLDESRSTQYM(Oxidation (M))_					0	0	1		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MATCH	A375_MHC_IP_R1	1		2	696.808642	1391.60273	-0.76214	-0.00053107	0.30077	0.00020958	-0.46138	-0.00032149	696.8089650635234	39.567	0.35402	39.567	39.34	39.694	0	-0.083504	8.171E-05	NaN	66.683	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2410200			14701	8474	10699	10778				407			-0.07740694484300548
FLDEYIFLA	9	Unmodified	_FLDEYIFLA_					0	0	0		DDX3X|p.V657Gfs*2|1|0.51|ENSG00000215301|chrX:41347694-41347695|-/G|frameshift_variant;ENSG00000215301|ENST00000644876|DDX3X;nc|ENSG00000215301|O00571-2|DDX3X;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENST00000418231.2_1_X:73350641-73351442:+|nuORF;DDX3Y|p.V403A|1|0.97|ENSG00000067048|chrY:12915926-12915926|T/C|missense_variant	DDX3X|p.V657Gfs*2|1|0.51|ENSG00000215301|chrX:41347694-41347695|-/G|frameshift_variant;DDX3Y|p.V403A|1|0.97|ENSG00000067048|chrY:12915926-12915926|T/C|missense_variant	DDX3X|p.V657Gfs*2|1|0.51|ENSG00000215301|chrX:41347694-41347695|-/G|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	566.19140625	2	565.792058	1129.56956	-0.65114	-0.00036841	0.2466	0.00013952	-0.40454	-0.00022888	565.7920339267959	133.53	0.30605	133.53	133.41	133.71	0					12	5	3	0	0	0	0.40041	1	51506	51506		38.151	15.003	1	8587500			14702	727;728	10700	10779	14338	14338					0.009960915259625835
FLDGNELTL	9	Unmodified	_FLDGNELTL_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	A375_MHC_IP_R1	1	511.6640319824219	2	511.263665	1020.51278	-0.083683	-4.2784E-05	-0.86509	-0.00044229	-0.94877	-0.00048507	511.26344027020343	115.7	0.86672	115.7	115.27	116.14	0					34	16	3	0	0	0	0.0090323	1	42423	42423		99.799	3.5142	1	4933100			14703	9580	10701	10780	14339	14339					0.003340439694284214
FLDGNELTL	9	Unmodified	_FLDGNELTL_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-SECPEP	A375_MHC_IP_R1	1	1022.1782836914062	1	1021.52005	1020.51278	0.5534	0.00056531	-0.10983	-0.00011219	0.44357	0.00045312	1021.5198330293306	115.64	0.81345	115.64	115.38	116.19	0					32	15	3	0	0	0	0.034037	1	42366	42366		99.799	3.5142	1	24043000			14704	9580	10701	10780	14340	14340					0.003340439694284214
FLDGNELTL	9	Unmodified	_FLDGNELTL_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	A375_MHC_IP_R2	2	1022.4773559570312	1	1021.52005	1020.51278	0.22192	0.00022669	0.40673	0.00041548	0.62864	0.00064217	1021.520418333927	114.96	0.81621	115.65	115.27	116.09	0.68999					33	15	3	0	0	0	0.066859	1	43269	43269		57.722	12.022	1	49017000			14705	9580	10701	10780	14341	14341					0.003340439694284214
FLDGNELTL	9	Unmodified	_FLDGNELTL_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	A375_MHC_IP_R2	2	511.6636047363281	2	511.263665	1020.51278	-0.55961	-0.00028611	0.2852	0.00014581	-0.27441	-0.0001403	511.26372524724223	114.96	0.66315	115.65	115.32	115.98	0.68999					21	12	2	0	0	0	0.015701	1	43326	43326		88.954	3.6818	1	6376300			14706	9580	10701	10780	14342	14342					0.003340439694284214
FLDGNEMTL	9	Oxidation (M)	_FLDGNEM(Oxidation (M))TL_		FLDGNEM(1)TL		FLDGNEM(79)TL	0	0	1		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	A375_MHC_IP_R1	1	528.6392211914062	2	528.239332	1054.46411	-0.61152	-0.00032303	-0.1001	-5.2874E-05	-0.71162	-0.0003759	528.2392695547487	76.744	1.4203	76.744	76.219	77.639	0					60	27	4	0	0	0	0.02559	1	27907	27907		78.728	40.577	1	23805000			14707	7410	10702	10781	14343	14343		378			-0.060941926619761944
FLDGNEMTL	9	Oxidation (M)	_FLDGNEM(Oxidation (M))TL_		FLDGNEM(1)TL		FLDGNEM(44)TL	0	0	1		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	A375_MHC_IP_R1	1	528.7161254882812	2	528.239332	1054.46411	-0.49382	-0.00026086	0.23928	0.0001264	-0.25455	-0.00013446	528.2392316217426	104.32	1.0661	104.32	103.93	104.99	0					26	20	2	0	0	0	0.13797	1	38283	38283		43.858	16.975	1	914970			14708	7410	10702	10781	14344	14344		378			-0.060941926619761944
FLDGNEMTL	9	Oxidation (M)	_FLDGNEM(Oxidation (M))TL_		FLDGNEM(1)TL		FLDGNEM(44)TL	0	0	1		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-SECPEP	A375_MHC_IP_R1	1	528.6387939453125	2	528.239332	1054.46411	-0.61825	-0.00032658	-0.10664	-5.6331E-05	-0.72489	-0.00038291	528.2392105008157	83.861	1.2674	83.861	83.024	84.292	0					39	24	2	0	0	0	0.35487	1	30573	30573		43.858	26.745	1	4570900			14709	7410	10702	10781	14345	14345		378			-0.060941926619761944
FLDGNEMTL	9	Oxidation (M)	_FLDGNEM(Oxidation (M))TL_		FLDGNEM(1)TL		FLDGNEM(100)TL	0	0	1		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	A375_MHC_IP_R2	2	528.7160034179688	2	528.239332	1054.46411	-0.5101	-0.00026946	-0.13733	-7.2545E-05	-0.64744	-0.000342	528.2392052952855	76.075	1.6737	76.815	76.232	77.905	0.74052					70	32	5	0	0	0	0.0090323	3	28817	28783;28817;28872		99.799	49.866	1	32977000			14710	7410	10702	10781	14346;14347;14348	14347		378			-0.060941926619761944
FLDGNEMTL	9	Oxidation (M)	_FLDGNEM(Oxidation (M))TL_		FLDGNEM(1)TL		FLDGNEM(44)TL	0	0	1		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-SECPEP	A375_MHC_IP_R2	2	528.6388549804688	2	528.239332	1054.46411	-0.5006	-0.00026443	-0.80457	-0.000425	-1.3052	-0.00068944	528.2389960689563	83.078	1.0643	83.817	83.393	84.458	0.73962					39	20	3	0	0	0	0.35487	1	31460	31460		43.858	25.712	1	5262800			14711	7410	10702	10781	14349	14349		378			-0.060941926619761944
FLDGNEMTL	9	Oxidation (M)	_FLDGNEM(Oxidation (M))TL_					0	0	1		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MATCH	A375_MHC_IP_R2	2		2	528.239332	1054.46411	-0.48745	-0.00025749	-0.41248	-0.00021789	-0.89994	-0.00047538	528.2390334964415	103.58	0.91248	104.34	103.99	104.9	0.76428	0.014003	-0.00026792	NaN	43.858	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1344600			14712	7410	10702	10781				378			-0.060941926619761944
FLDGNEMTL	9	Unmodified	_FLDGNEMTL_					0	0	0		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	A375_MHC_IP_R1	1	520.6475219726562	2	520.241875	1038.4692	-0.48457	-0.00025209	0.36411	0.00018943	-0.12045	-6.2665E-05	520.2420904609269	104.28	0.814	104.28	103.83	104.64	0					33	15	3	0	0	0	0.070818	1	38238	38238		56.177	10.156	1	6100000			14713	7410	10702	10782	14350	14350					-0.04849888799344626
FLDGNEMTL	9	Unmodified	_FLDGNEMTL_					0	0	0		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	A375_MHC_IP_R1	1	1039.8818359375	1	1039.47647	1038.4692	0.19126	0.00019881	0.15388	0.00015995	0.34514	0.00035877	1039.4768169887243	104.26	1.574	104.26	103.93	105.5	0					66	30	4	0	0	0	0.41409	1	38636	38636		24.021	9.1823	1	25752000			14714	7410	10702	10782	14351	14351					-0.04849888799344626
FLDGNEMTL	9	Unmodified	_FLDGNEMTL_					0	0	0		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	A375_MHC_IP_R2	2	1040.3792724609375	1	1039.47647	1038.4692	0.078046	8.1127E-05	-0.19962	-0.0002075	-0.12158	-0.00012638	1039.4764018358035	103.5	1.6261	104.26	103.94	105.57	0.76428					62	31	4	0	0	0	0.2487	2	39142	39142;39483		34.402	11.493	1	20783000			14715	7410	10702	10782	14352;14353	14352					-0.04849888799344626
FLDGNEMTL	9	Unmodified	_FLDGNEMTL_					0	0	0		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	A375_MHC_IP_R2	2	520.6414184570312	2	520.241875	1038.4692	-0.61862	-0.00032183	-0.040094	-2.0859E-05	-0.65871	-0.00034269	520.2418531261236	103.52	1.5251	104.28	103.84	105.36	0.76428					51	29	3	0	0	0	0.012968	2	39182	39156;39182		92.491	40.223	1	7798800			14716	7410	10702	10782	14354;14355	14355					-0.04849888799344626
FLDGRPLTL	9	Unmodified	_FLDGRPLTL_					0	0	0		ENSG00000152348|ENST00000282185|ATG10;ENST00000514253.2_1_5:81460277-81572080:+|nuORF	ENSG00000152348|ENST00000282185|ATG10	ENSG00000152348|ENST00000282185|ATG10	MULTI-SECPEP	A375_MHC_IP_R1	1	516.6978149414062	2	516.297842	1030.58113	-0.74127	-0.00038271	0.40577	0.0002095	-0.33549	-0.00017321	516.7996557649847	90.437	0.7627	90.437	90.083	90.845	0					20	14	2	0	0	0	0.33896	1	33261	33261		47.594	16.958	1	1538400			14717	5958	10703	10783	14356	14356					0.06706333339934645
FLDGRPLTL	9	Unmodified	_FLDGRPLTL_					0	0	0		ENSG00000152348|ENST00000282185|ATG10;ENST00000514253.2_1_5:81460277-81572080:+|nuORF	ENSG00000152348|ENST00000282185|ATG10	ENSG00000152348|ENST00000282185|ATG10	MULTI-SECPEP	A375_MHC_IP_R2	2	516.6975708007812	2	516.297842	1030.58113	-0.67698	-0.00034952	0.19997	0.00010324	-0.47701	-0.00024628	516.2977307701136	89.581	0.61409	90.313	90.085	90.699	0.7318					18	11	2	0	0	0	0.50484	1	34117	34117		34.932	8.6639	1	1527700			14718	5958	10703	10783	14357	14357					0.06706333339934645
FLDHIIASV	9	Unmodified	_FLDHIIASV_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-2|KDM3B;nc|ENSG00000120733|Q7LBC6-3|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-MSMS	A375_MHC_IP_R1	1	508.68609619140625	2	507.784567	1013.55458	-0.39066	-0.00019837	-0.2419	-0.00012283	-0.63256	-0.00032121	507.78438282996996	100.05	2.0741	100.05	99.673	101.75	0					55	40	3	0	0	0	0.022213	1	36735	36735		81.613	35.592	1	9063500			14719	3686	10704	10784	14358	14358					0.048346444486242035
FLDHIIASV	9	Unmodified	_FLDHIIASV_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-2|KDM3B;nc|ENSG00000120733|Q7LBC6-3|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-SECPEP	A375_MHC_IP_R2	2	508.1841735839844	2	507.784567	1013.55458	-0.56021	-0.00028446	-0.21205	-0.00010767	-0.77225	-0.00039214	507.78445501899614	99.107	1.4228	99.867	99.556	100.98	0.75977					43	27	2	0	0	0	0.010931	1	37578	37578		139.54	68.828	1	5187300			14720	3686	10704	10784	14359	14359					0.048346444486242035
FLDHKTLYY	9	Unmodified	_FLDHKTLYY_					0	0	0		ENSG00000083168|ENST00000265713|KAT6A;ENST00000444292.2_1_X:95228575-95229244:-|nuORF;ENST00000490365.1_1_10:76744849-76785012:+|nuORF;nc|ENSG00000172977|Q92993-2|KAT5;nc|ENSG00000172977|Q92993-4|KAT5;nc|ENSG00000172977|Q92993|KAT5;ENSG00000172977|ENST00000341318|KAT5;nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B;ENST00000513980.5_1_17:47892935-47904861:+|nuORF;ENST00000512616.5_1_17:47892935-47904861:+|nuORF;nc|ENSG00000136504|O95251-3|KAT7;nc|ENSG00000136504|O95251-5|KAT7;nc|ENSG00000136504|O95251-2|KAT7;nc|ENSG00000136504|O95251-4|KAT7;ENSG00000136504|ENST00000259021|KAT7	ENSG00000083168|ENST00000265713|KAT6A;nc|ENSG00000156650|Q8WYB5-3|KAT6B;ENST00000513980.5_1_17:47892935-47904861:+|nuORF	ENSG00000083168|ENST00000265713|KAT6A	MULTI-MSMS	A375_MHC_IP_R1	1	400.941650390625	3	400.541363	1198.60226	-0.19132	-7.663E-05	0.44225	0.00017714	0.25093	0.00010051	400.54148593256986	55.993	0.75871	55.993	55.79	56.548	0					34	14	3	0	0	0	0.12771	1	20027	20027		42.312	23.939	1	7023500			14721	1772;6202;4795	10705	10785	14360	14360					0.01090298648841781
FLDHKTLYY	9	Unmodified	_FLDHKTLYY_					0	0	0		ENSG00000083168|ENST00000265713|KAT6A;ENST00000444292.2_1_X:95228575-95229244:-|nuORF;ENST00000490365.1_1_10:76744849-76785012:+|nuORF;nc|ENSG00000172977|Q92993-2|KAT5;nc|ENSG00000172977|Q92993-4|KAT5;nc|ENSG00000172977|Q92993|KAT5;ENSG00000172977|ENST00000341318|KAT5;nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B;ENST00000513980.5_1_17:47892935-47904861:+|nuORF;ENST00000512616.5_1_17:47892935-47904861:+|nuORF;nc|ENSG00000136504|O95251-3|KAT7;nc|ENSG00000136504|O95251-5|KAT7;nc|ENSG00000136504|O95251-2|KAT7;nc|ENSG00000136504|O95251-4|KAT7;ENSG00000136504|ENST00000259021|KAT7	ENSG00000083168|ENST00000265713|KAT6A;nc|ENSG00000156650|Q8WYB5-3|KAT6B;ENST00000513980.5_1_17:47892935-47904861:+|nuORF	ENSG00000083168|ENST00000265713|KAT6A	MULTI-MSMS	A375_MHC_IP_R1	1	600.7085571289062	2	600.308406	1198.60226	-0.289	-0.00017349	-0.063446	-3.8087E-05	-0.35245	-0.00021158	600.3083318023653	55.974	0.60847	55.974	55.738	56.347	0					23	11	3	0	0	0	0.014789	1	20060	20060		90.135	52.161	1	4045100			14722	1772;6202;4795	10705	10785	14361	14361					0.01090298648841781
FLDHKTLYY	9	Unmodified	_FLDHKTLYY_					0	0	0		ENSG00000083168|ENST00000265713|KAT6A;ENST00000444292.2_1_X:95228575-95229244:-|nuORF;ENST00000490365.1_1_10:76744849-76785012:+|nuORF;nc|ENSG00000172977|Q92993-2|KAT5;nc|ENSG00000172977|Q92993-4|KAT5;nc|ENSG00000172977|Q92993|KAT5;ENSG00000172977|ENST00000341318|KAT5;nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B;ENST00000513980.5_1_17:47892935-47904861:+|nuORF;ENST00000512616.5_1_17:47892935-47904861:+|nuORF;nc|ENSG00000136504|O95251-3|KAT7;nc|ENSG00000136504|O95251-5|KAT7;nc|ENSG00000136504|O95251-2|KAT7;nc|ENSG00000136504|O95251-4|KAT7;ENSG00000136504|ENST00000259021|KAT7	ENSG00000083168|ENST00000265713|KAT6A;nc|ENSG00000156650|Q8WYB5-3|KAT6B;ENST00000513980.5_1_17:47892935-47904861:+|nuORF	ENSG00000083168|ENST00000265713|KAT6A	MULTI-MSMS	A375_MHC_IP_R2	2	400.94110107421875	3	400.541363	1198.60226	-0.15161	-6.0728E-05	0.023221	9.3011E-06	-0.12839	-5.1426E-05	400.541282231986	55.171	0.86263	55.922	55.678	56.54	0.75075					32	16	3	0	0	0	0.082375	1	20833	20833		49.527	36.655	1	7270000			14723	1772;6202;4795	10705	10785	14362	14362					0.01090298648841781
FLDHKTLYY	9	Unmodified	_FLDHKTLYY_					0	0	0		ENSG00000083168|ENST00000265713|KAT6A;ENST00000444292.2_1_X:95228575-95229244:-|nuORF;ENST00000490365.1_1_10:76744849-76785012:+|nuORF;nc|ENSG00000172977|Q92993-2|KAT5;nc|ENSG00000172977|Q92993-4|KAT5;nc|ENSG00000172977|Q92993|KAT5;ENSG00000172977|ENST00000341318|KAT5;nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B;ENST00000513980.5_1_17:47892935-47904861:+|nuORF;ENST00000512616.5_1_17:47892935-47904861:+|nuORF;nc|ENSG00000136504|O95251-3|KAT7;nc|ENSG00000136504|O95251-5|KAT7;nc|ENSG00000136504|O95251-2|KAT7;nc|ENSG00000136504|O95251-4|KAT7;ENSG00000136504|ENST00000259021|KAT7	ENSG00000083168|ENST00000265713|KAT6A;nc|ENSG00000156650|Q8WYB5-3|KAT6B;ENST00000513980.5_1_17:47892935-47904861:+|nuORF	ENSG00000083168|ENST00000265713|KAT6A	MULTI-SECPEP	A375_MHC_IP_R2	2	600.7076416015625	2	600.308406	1198.60226	-0.62806	-0.00037703	-0.032042	-1.9235E-05	-0.66011	-0.00039627	600.3081509600024	55.184	0.45731	55.934	55.678	56.135	0.75075					18	8	3	0	0	0	0.15393	1	20841	20841		71.708	29.868	1	4429200			14724	1772;6202;4795	10705	10785	14363	14363					0.01090298648841781
FLDHLETLK	9	Unmodified	_FLDHLETLK_					0	0	0		MYH4|p.S1495F|1|0.35|ENSG00000264424|chr17:10448665-10448665|G/A|missense_variant	MYH4|p.S1495F|1|0.35|ENSG00000264424|chr17:10448665-10448665|G/A|missense_variant	MYH4|p.S1495F|1|0.35|ENSG00000264424|chr17:10448665-10448665|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	372.9415283203125	3	372.541363	1114.60226	0.46397	0.00017285	0.19388	7.2228E-05	0.65784	0.00024507	372.5413997983901	51.891	0.76193	51.891	51.625	52.387	0					28	14	3	0	0	0	0.7235	1	18445	18445		4.897	0	1	2669300			14725	14434	10706	10786	14364	14364					0.04954298648817712
FLDHRFSSY	9	Unmodified	_FLDHRFSSY_					0	0	0		nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;nc|ENSG00000070669|P08243-3|ASNS	nc|ENSG00000070669|P08243-2|ASNS	nc|ENSG00000070669|P08243-2|ASNS	MULTI-MSMS	A375_MHC_IP_R1	1	391.5893859863281	3	391.189212	1170.54581	0.51457	0.0002013	-0.051221	-2.0037E-05	0.46335	0.00018126	391.1891744196262	49.498	0.40681	49.498	49.285	49.692	0					17	7	3	0	0	0	0.31062	1	17538	17538		29.841	14.592	1	2225200			14726	1496	10707	10787	14365	14365					-0.0326432918784576
FLDHRFSSY	9	Unmodified	_FLDHRFSSY_					0	0	0		nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;nc|ENSG00000070669|P08243-3|ASNS	nc|ENSG00000070669|P08243-2|ASNS	nc|ENSG00000070669|P08243-2|ASNS	MULTI-SECPEP	A375_MHC_IP_R2	2	390.92779541015625	3	391.189212	1170.54581	-0.23447	-9.1721E-05	0.17698	6.9233E-05	-0.057484	-2.2487E-05	391.18882851324616	48.654	0.45931	49.411	49.18	49.639	0.75737					15	8	3	0	0	0	0.61452	1	18300	18300		26.268	17.523	1	1883600			14727	1496	10707	10787	14366	14366					-0.0326432918784576
FLDIHNIHV	9	Unmodified	_FLDIHNIHV_					0	0	0		nc|ENSG00000171100|Q13496-2|MTM1;ENSG00000171100|ENST00000370396|MTM1;ENSG00000087053|ENST00000346299|MTMR2;nc|ENSG00000087053|Q13614-2|MTMR2	nc|ENSG00000171100|Q13496-2|MTM1;ENSG00000087053|ENST00000346299|MTMR2	ENSG00000087053|ENST00000346299|MTMR2	MULTI-SECPEP	A375_MHC_IP_R1	1	370.2696533203125	3	369.869703	1106.58728	0.42833	0.00015843	-0.2135	-7.8969E-05	0.21483	7.9459E-05	369.86955033430553	78.226	0.70896	78.226	77.998	78.707	0					20	13	2	0	0	0	0.74412	1	28572	28572		14.405	7.3037	1	3109500			14728	7573;1850	10708	10788	14367	14367					0.03824851571448562
FLDIHNIHV	9	Unmodified	_FLDIHNIHV_					0	0	0		nc|ENSG00000171100|Q13496-2|MTM1;ENSG00000171100|ENST00000370396|MTM1;ENSG00000087053|ENST00000346299|MTMR2;nc|ENSG00000087053|Q13614-2|MTMR2	nc|ENSG00000171100|Q13496-2|MTM1;ENSG00000087053|ENST00000346299|MTMR2	ENSG00000087053|ENST00000346299|MTMR2	MULTI-MSMS	A375_MHC_IP_R2	2	370.2696533203125	3	369.869703	1106.58728	0.29987	0.00011091	-0.20353	-7.5279E-05	0.096346	3.5635E-05	369.8695628881393	77.345	0.60916	78.088	77.807	78.416	0.74293					24	11	3	0	0	0	0.53367	1	29358	29358		12.873	5.7709	1	4450800			14729	7573;1850	10708	10788	14368	14368					0.03824851571448562
FLDIPVSLQV	10	Unmodified	_FLDIPVSLQV_					0	0	0		ENSG00000147596|ENST00000276594|PRDM14;PRDM14|p.K372N|1|0.4|ENSG00000147596|chr8:70066302-70066302|T/A|missense_variant	ENSG00000147596|ENST00000276594|PRDM14	ENSG00000147596|ENST00000276594|PRDM14	MULTI-SECPEP	A375_MHC_IP_R1	1	566.19140625	2	565.826432	1129.63831	-0.65194	-0.00036888	-0.064226	-3.6341E-05	-0.71616	-0.00040522	565.8264979365963	133.53	0.25478	133.53	133.41	133.66	0					7	4	2	0	0	0	0.85226	1	51506	51506		20.454	2.3073	1	9085200			14730	5694	10709	10789	14369	14369					0.0786775582566861
FLDIPVSLQV	10	Unmodified	_FLDIPVSLQV_					0	0	0		ENSG00000147596|ENST00000276594|PRDM14;PRDM14|p.K372N|1|0.4|ENSG00000147596|chr8:70066302-70066302|T/A|missense_variant	ENSG00000147596|ENST00000276594|PRDM14	ENSG00000147596|ENST00000276594|PRDM14	MULTI-SECPEP	A375_MHC_IP_R2	2	566.1923217773438	2	565.826432	1129.63831	-0.35842	-0.00020281	-0.16046	-9.0792E-05	-0.51888	-0.0002936	565.82661078008	133.36	0.20312	133.53	133.4	133.6	0.16487					5	3	2	0	0	0	0.85226	1	52487	52487		20.454	2.3073	1	4486800			14731	5694	10709	10789	14370	14370					0.0786775582566861
FLDIVDNSI	9	Unmodified	_FLDIVDNSI_					0	0	0		tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1	tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1	tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	518.168212890625	2	518.27149	1034.52843	-0.48932	-0.0002536	0.87452	0.00045324	0.3852	0.00019964	518.2706201363083	98.481	0.76292	98.481	97.948	98.711	0					21	14	2	0	0	0	0.69504	1	36209	36209		4.3292	1.7518	1	1074500			14732	29393	10710	10790	14371	14371					0.012543304864720994
FLDKELKEC	9	Unmodified	_FLDKELKEC_					0	0	0		nc|ENSG00000104299|Q9NV88-3|INTS9;ENSG00000104299|ENST00000521022|INTS9;ENST00000520983.5_1_8:28651295-28747426:-|nuORF	nc|ENSG00000104299|Q9NV88-3|INTS9;ENST00000520983.5_1_8:28651295-28747426:-|nuORF	nc|ENSG00000104299|Q9NV88-3|INTS9	MULTI-MSMS	A375_MHC_IP_R1	1	375.9268493652344	3	375.526725	1123.55835	0.38204	0.00014347	0.029283	1.0997E-05	0.41133	0.00015446	375.52662837026344	43.601	0.70946	43.601	43.3	44.01	0					28	13	3	0	0	0	0.094655	1	15171	15171		47.732	22.85	1	3095600			14733	2494;13004	10711	10791	14372	14372					0.001509461601926887
FLDKELKEC	9	Unmodified	_FLDKELKEC_					0	0	0		nc|ENSG00000104299|Q9NV88-3|INTS9;ENSG00000104299|ENST00000521022|INTS9;ENST00000520983.5_1_8:28651295-28747426:-|nuORF	nc|ENSG00000104299|Q9NV88-3|INTS9;ENST00000520983.5_1_8:28651295-28747426:-|nuORF	nc|ENSG00000104299|Q9NV88-3|INTS9	MULTI-SECPEP	A375_MHC_IP_R2	2	375.9265441894531	3	375.526725	1123.55835	0.36229	0.00013605	-0.45384	-0.00017043	-0.091554	-3.4381E-05	375.5264917675786	42.806	0.60731	43.579	43.369	43.977	0.7724					18	11	2	0	0	0	0.37663	1	15933	15933		34.222	15.5	1	3351500			14734	2494;13004	10711	10791	14373	14373					0.001509461601926887
FLDKELTGL	9	Unmodified	_FLDKELTGL_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-SECPEP	A375_MHC_IP_R1	1	518.689208984375	2	518.289682	1034.56481	-0.72925	-0.00037796	-0.20559	-0.00010656	-0.93484	-0.00048452	518.2895429459176	85.235	1.1191	85.235	84.852	85.971	0					30	21	2	0	0	0	0.042716	1	31217	31217		96.367	20.606	1	4390700			14735	3128	10712	10792	14374	14374					0.04891207383184337
FLDKELTGL	9	Unmodified	_FLDKELTGL_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-SECPEP	A375_MHC_IP_R2	2	517.55908203125	2	518.289682	1034.56481	-0.61466	-0.00031857	-0.39167	-0.000203	-1.0063	-0.00052157	518.2896681032806	84.416	0.81233	85.152	84.813	85.626	0.73602					33	15	3	0	0	0	0.090157	1	32058	32058		67.838	27.888	1	5527400			14736	3128	10712	10792	14375	14375					0.04891207383184337
FLDKNDEEY	9	Unmodified	_FLDKNDEEY_					0	0	0		ENSG00000196968|ENST00000372841|FUT11;nc|ENSG00000196968|Q495W5-2|FUT11;ENST00000465695.1_1_10:75532330-75533574:+|nuORF	ENSG00000196968|ENST00000372841|FUT11	ENSG00000196968|ENST00000372841|FUT11	MULTI-MSMS	A375_MHC_IP_R2	2	587.2338256835938	2	586.758943	1171.50333	-0.59607	-0.00034975	0.65132	0.00038217	0.05525	3.2418E-05	586.7586833631557	39.781	0.30476	40.556	40.422	40.727	0.77451					7	5	2	0	0	0	0.38603	1	14741	14741		25.399	7.2643	1	901890			14737	9096	10713	10793	14376	14376					-0.07555769106738808
FLDKNDHSL	9	Unmodified	_FLDKNDHSL_					0	0	0		nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF;nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT	nc|ENSG00000122966|O14578-3|CIT	nc|ENSG00000122966|O14578-3|CIT	MULTI-SECPEP	A375_MHC_IP_R1	1	363.9170227050781	3	363.517218	1087.52982	0.021702	7.889E-06	-0.2451	-8.9097E-05	-0.22339	-8.1208E-05	363.5170871829838	32.353	0.86268	32.353	32.075	32.938	0					35	16	4	0	0	0	0.083712	1	10432	10432		51.415	0	1	15474000			14738	3818	10714	10794	14377	14377					-0.0104403542475211
FLDKNDHSL	9	Unmodified	_FLDKNDHSL_					0	0	0		nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF;nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT	nc|ENSG00000122966|O14578-3|CIT	nc|ENSG00000122966|O14578-3|CIT	MULTI-SECPEP	A375_MHC_IP_R1	1	545.1480102539062	2	544.772188	1087.52982	-0.72244	-0.00039357	0.3234	0.00017618	-0.39905	-0.00021739	544.7722883561728	32.403	0.40723	32.403	32.127	32.535	0					14	7	3	0	0	0	0.27114	1	10463	10463		38.615	38.615	1	3786600			14739	3818	10714	10794	14378	14378					-0.0104403542475211
FLDKNDHSL	9	Unmodified	_FLDKNDHSL_					0	0	0		nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF;nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT	nc|ENSG00000122966|O14578-3|CIT	nc|ENSG00000122966|O14578-3|CIT	MULTI-SECPEP	A375_MHC_IP_R2	2	363.9169616699219	3	363.517218	1087.52982	-0.089629	-3.2582E-05	-0.27308	-9.9269E-05	-0.36271	-0.00013185	363.5171008586753	31.538	0.6093	32.257	32.077	32.686	0.71857					28	11	3	0	0	0	0.20645	1	11158	11158		51.415	22.921	1	17628000			14740	3818	10714	10794	14379	14379					-0.0104403542475211
FLDKQGFYV	9	Unmodified	_FLDKQGFYV_					0	0	0		nc|ENSG00000127527|Q9UBC2-4|EPS15L1;nc|ENSG00000127527|Q9UBC2-3|EPS15L1;nc|ENSG00000127527|Q9UBC2|EPS15L1;ENSG00000127527|ENST00000455140|EPS15L1;ENST00000597559.5_1_19:16547732-16582756:-|nuORF	nc|ENSG00000127527|Q9UBC2-4|EPS15L1	nc|ENSG00000127527|Q9UBC2-4|EPS15L1	MULTI-SECPEP	A375_MHC_IP_R1	1	559.1904296875	2	558.78985	1115.56515	-0.51997	-0.00029056	-0.18727	-0.00010464	-0.70724	-0.0003952	558.789603510748	81.415	1.7748	81.415	80.541	82.316	0					20	13	2	0	0	0	0.33896	1	29779	29779		47.594	11.55	1	3216500			14741	4096	10715	10795	14380	14380					0.011986271030536955
FLDKQGFYV	9	Unmodified	_FLDKQGFYV_					0	0	0		nc|ENSG00000127527|Q9UBC2-4|EPS15L1;nc|ENSG00000127527|Q9UBC2-3|EPS15L1;nc|ENSG00000127527|Q9UBC2|EPS15L1;ENSG00000127527|ENST00000455140|EPS15L1;ENST00000597559.5_1_19:16547732-16582756:-|nuORF	nc|ENSG00000127527|Q9UBC2-4|EPS15L1	nc|ENSG00000127527|Q9UBC2-4|EPS15L1	MULTI-SECPEP	A375_MHC_IP_R2	2	558.275146484375	2	558.78985	1115.56515	-0.75215	-0.00042029	-0.73343	-0.00040983	-1.4856	-0.00083012	558.7895334903009	80.63	0.96477	81.375	80.708	81.673	0.74474					25	18	2	0	0	0	0.40377	1	30634	30634		41.956	16.556	1	3650900			14742	4096	10715	10795	14381	14381					0.011986271030536955
FLDKSGLQGY	10	Unmodified	_FLDKSGLQGY_					0	0	0		nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM	nc|ENSG00000073921|Q13492-4|PICALM	nc|ENSG00000073921|Q13492-4|PICALM	MULTI-SECPEP	A375_MHC_IP_R1	1	564.6900024414062	2	564.290214	1126.56587	-0.46378	-0.00026171	0.017083	9.6398E-06	-0.4467	-0.00025207	564.2901926955673	58.964	1.4752	58.964	58.633	60.109	0					68	28	4	0	0	0	0.061135	1	21146	21146		98.73	49.176	1	43395000			14743	1573	10716	10796	14382	14382					0.007654217521121609
FLDKSGLQGY	10	Unmodified	_FLDKSGLQGY_					0	0	0		nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM	nc|ENSG00000073921|Q13492-4|PICALM	nc|ENSG00000073921|Q13492-4|PICALM	MULTI-SECPEP	A375_MHC_IP_R2	2	564.6591186523438	2	564.290214	1126.56587	-0.78372	-0.00044224	0.039071	2.2047E-05	-0.74465	-0.0004202	564.2901999110625	58.257	1.7727	59.006	58.679	60.452	0.74894					78	34	5	0	0	0	0.018335	1	22003	22003		128.58	52.818	1	49899000			14744	1573	10716	10796	14383	14383					0.007654217521121609
FLDKVVGL	8	Unmodified	_FLDKVVGL_					0	0	0		ENST00000473389.5_1_X:110928319-110931226:+|nuORF;nc|ENSG00000101901|Q9NP73-2|ALG13	ENST00000473389.5_1_X:110928319-110931226:+|nuORF	ENST00000473389.5_1_X:110928319-110931226:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	446.1706848144531	2	445.770929	889.527304	-0.079239	-3.5322E-05	1.8099	0.00080679	1.7306	0.00077147	445.7709185595015	87.67	0.60922	87.67	87.34	87.949	0					21	11	2	0	0	0	0.91117	1	32212	32212		27.629	5.8822	1	1591200			14745	12389	10717	10797	14384	14384					0.07812160908247279
FLDLFSSLLP	10	Unmodified	_FLDLFSSLLP_					0	0	0			REV__ENST00000300952.6_1_19:1257468-1257951:+|nuORF	REV__ENST00000300952.6_1_19:1257468-1257951:+|nuORF	MSMS	A375_MHC_IP_R1	1	384.2857971191406	3	384.549747	1150.62741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.949	1	29.949	29.449	30.449	0								0	0	0	0.14601	1	9453	9453		16.566	2.1605	1		+		14746	23419	10718	10798	14385	14385					0.058123534513924824
FLDLGPPGI	9	Unmodified	_FLDLGPPGI_					0	0	0		ENSG00000011275|ENST00000389902|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216	ENSG00000011275|ENST00000389902|RNF216	ENSG00000011275|ENST00000389902|RNF216	MULTI-MSMS	A375_MHC_IP_R1	1	928.5985107421875	1	928.513845	927.506569	0.28214	0.00026197	-0.38552	-0.00035796	-0.10339	-9.5997E-05	928.5137169415968	127.54	0.30329	127.54	127.42	127.72	0					8	5	2	0	0	0	0.018481	1	48894	48894		85.357	24.967	1	8386900			14747	997	10719	10799	14386	14386					0.03991570528569355
FLDLKGNNL	9	Unmodified	_FLDLKGNNL_					0	0	0		LRRC45|p.R99Q|1|0.19|ENSG00000169683|chr17:82024706-82024706|G/A|missense_variant;ENSG00000169683|ENST00000306688|LRRC45	LRRC45|p.R99Q|1|0.19|ENSG00000169683|chr17:82024706-82024706|G/A|missense_variant	LRRC45|p.R99Q|1|0.19|ENSG00000169683|chr17:82024706-82024706|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	517.5588989257812	2	517.287474	1032.5604	-0.72758	-0.00037637	-0.28503	-0.00014744	-1.0126	-0.00052381	517.2873897656715	67.504	1.2196	68.24	67.495	68.715	0.73631					72	23	4	0	0	0	0.58047	1	25710	25710		15.847	0.078963	1	28541000			14748	7429	10720	10800	14387	14387					0.04541742960282136
FLDLNTEGY	9	Unmodified	_FLDLNTEGY_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.E2519Dfs*5|1|0.21|ENSG00000188906|chr12:40367737-40367738|-/CTTAG|frameshift_variant;ENST00000479187.5_1_12:40692272-40758932:+|nuORF	ENSG00000188906|ENST00000298910|LRRK2	ENSG00000188906|ENST00000298910|LRRK2	MULTI-MSMS	A375_MHC_IP_R1	1	536.6531372070312	2	536.253297	1070.49204	-0.67387	-0.00036137	0.46187	0.00024768	-0.212	-0.00011369	536.2535664403146	103.36	1.0176	103.36	103.01	104.03	0					50	19	4	0	0	0	0.070818	2	37932	37932;38067		56.177	16.22	1	6539200			14749	8945	10721	10801	14388;14389	14388					-0.040385464102200785
FLDLNTEGY	9	Unmodified	_FLDLNTEGY_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.E2519Dfs*5|1|0.21|ENSG00000188906|chr12:40367737-40367738|-/CTTAG|frameshift_variant;ENST00000479187.5_1_12:40692272-40758932:+|nuORF	ENSG00000188906|ENST00000298910|LRRK2	ENSG00000188906|ENST00000298910|LRRK2	MULTI-MSMS	A375_MHC_IP_R2	2	536.7145385742188	2	536.253297	1070.49204	-0.8582	-0.00046021	0.049172	2.6369E-05	-0.80903	-0.00043384	536.2533206066082	102.69	1.2725	103.46	103.07	104.35	0.76428					44	24	3	0	0	0	0.034481	2	38982	38855;38982		71.134	37.031	1	11152000			14750	8945	10721	10801	14390;14391	14391					-0.040385464102200785
FLDNERHEV	9	Unmodified	_FLDNERHEV_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;nc|ENSG00000123143|Q16512-2|PKN1	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-MSMS	A375_MHC_IP_R1	1	387.2564697265625	3	386.856122	1157.54654	-0.13023	-5.0378E-05	0.20486	7.9251E-05	0.074633	2.8872E-05	386.8561661361962	29.822	1.7065	29.822	29.555	31.262	0					75	33	4	0	0	0	0.024574	1	9374	9374		64.927	41.126	1	170930000			14751	3829	10722	10802	14392	14392					-0.025935345388234055
FLDNERHEV	9	Unmodified	_FLDNERHEV_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;nc|ENSG00000123143|Q16512-2|PKN1	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-MSMS	A375_MHC_IP_R1	1	580.179931640625	2	579.780544	1157.54654	-0.56874	-0.00032974	-0.039128	-2.2686E-05	-0.60787	-0.00035243	579.7804431464514	29.822	0.54304	29.822	29.607	30.15	0					24	10	3	0	0	0	0.010042	2	9382	9382;9479		124.95	63.351	1	41085000			14752	3829	10722	10802	14393;14394	14393					-0.025935345388234055
FLDNERHEV	9	Unmodified	_FLDNERHEV_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;nc|ENSG00000123143|Q16512-2|PKN1	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-MSMS	A375_MHC_IP_R2	2	387.96807861328125	3	386.856122	1157.54654	-0.99119	-0.00038345	0.58251	0.00022535	-0.40868	-0.0001581	386.85632942063086	29.106	1.104	29.805	29.584	30.688	0.69872					69	21	4	0	0	0	0.2487	1	10128	10128		45.74	45.74	1	182820000			14753	3829	10722	10802	14395	14395					-0.025935345388234055
FLDNERHEV	9	Unmodified	_FLDNERHEV_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;nc|ENSG00000123143|Q16512-2|PKN1	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-MSMS	A375_MHC_IP_R2	2	580.1800537109375	2	579.780544	1157.54654	-1.1366	-0.00065895	0.29945	0.00017362	-0.8371	-0.00048533	579.7806611608567	29.106	0.65153	29.805	29.634	30.286	0.69872					29	12	3	0	0	0	0.009815	1	10137	10137		114.5	61.093	1	41248000			14754	3829	10722	10802	14396	14396					-0.025935345388234055
FLDNGPKTI	9	Unmodified	_FLDNGPKTI_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10823583-10825134:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-SECPEP	A375_MHC_IP_R1	1	503.1739807128906	2	502.7742	1003.53385	-0.28414	-0.00014286	0.33877	0.00017033	0.054634	2.7469E-05	502.7742531806466	52.008	0.76224	52.008	51.728	52.49	0					26	14	3	0	0	0	0.011256	1	18500	18500		132.38	50.767	1	7289400			14755	2929	10723	10803	14397	14397					0.03222054068965008
FLDNGPKTI	9	Unmodified	_FLDNGPKTI_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10823583-10825134:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-SECPEP	A375_MHC_IP_R2	2	503.17340087890625	2	502.7742	1003.53385	-0.79853	-0.00040148	0.25414	0.00012777	-0.54439	-0.00027371	502.77418672299444	51.288	0.75829	52.04	51.562	52.321	0.75225					35	14	4	0	0	0	0.019499	1	19265	19265		114.2	43.068	1	8125700			14756	2929	10723	10803	14398	14398					0.03222054068965008
FLDNSLDTV	9	Unmodified	_FLDNSLDTV_					0	0	0		ENSG00000133104|ENST00000438666|SPART;ENST00000495510.1_1_13:36900679-36920374:-|nuORF	ENSG00000133104|ENST00000438666|SPART	ENSG00000133104|ENST00000438666|SPART	MULTI-MSMS	A375_MHC_IP_R1	1	512.6529541015625	2	512.253297	1022.49204	-0.27326	-0.00013998	-0.58941	-0.00030192	-0.86266	-0.0004419	512.2530043006038	93.044	0.6626	93.044	92.718	93.381	0					27	12	3	0	0	0	0.0070829	1	34169	34169		131.27	31.469	1	5215000			14757	4486	10724	10804	14399	14399					-0.01830546410246825
FLDNSLDTV	9	Unmodified	_FLDNSLDTV_					0	0	0		ENSG00000133104|ENST00000438666|SPART;ENST00000495510.1_1_13:36900679-36920374:-|nuORF	ENSG00000133104|ENST00000438666|SPART	ENSG00000133104|ENST00000438666|SPART	MULTI-SECPEP	A375_MHC_IP_R2	2	512.653076171875	2	512.253297	1022.49204	-0.67332	-0.00034491	0.12556	6.432E-05	-0.54776	-0.00028059	512.2532966725479	92.371	0.75888	93.11	92.684	93.443	0.73901					31	14	3	0	0	0	0.018928	1	35077	35077		111.29	39.365	1	3648100			14758	4486	10724	10804	14400	14400					-0.01830546410246825
FLDPAQRDL	9	Unmodified	_FLDPAQRDL_					0	0	0		ENSG00000142065|ENST00000270001|ZFP14	ENSG00000142065|ENST00000270001|ZFP14	ENSG00000142065|ENST00000270001|ZFP14	MULTI-SECPEP	A375_MHC_IP_R1	1	538.182373046875	2	537.782556	1073.55056	-0.65628	-0.00035293	0.70769	0.00038058	0.051414	2.7649E-05	537.7831163582774	59.758	0.86398	59.758	59.448	60.312	0					26	16	2	0	0	0	0.39273	1	21489	21489		43.982	43.982	1	7687200			14759	5286	10725	10805	14401	14401					0.016725549548937124
FLDPAQRDL	9	Unmodified	_FLDPAQRDL_					0	0	0		ENSG00000142065|ENST00000270001|ZFP14	ENSG00000142065|ENST00000270001|ZFP14	ENSG00000142065|ENST00000270001|ZFP14	MULTI-SECPEP	A375_MHC_IP_R2	2	538.1823120117188	2	537.782556	1073.55056	-1.2484	-0.00067137	0.35831	0.00019269	-0.8901	-0.00047868	537.7830604191429	58.919	0.7095	59.666	59.438	60.148	0.74714					28	13	3	0	0	0	0.36673	1	22295	22295		45.74	7.5643	1	7452400			14760	5286	10725	10805	14402	14402					0.016725549548937124
FLDPAQRDLY	10	Unmodified	_FLDPAQRDLY_					0	0	0		ENSG00000142065|ENST00000270001|ZFP14	ENSG00000142065|ENST00000270001|ZFP14	ENSG00000142065|ENST00000270001|ZFP14	MULTI-MSMS	A375_MHC_IP_R1	1	619.7135009765625	2	619.31422	1236.61389	-0.18349	-0.00011364	-0.33471	-0.00020729	-0.5182	-0.00032093	619.3141972809051	71.59	0.55293	71.59	71.364	71.917	0					16	10	2	0	0	0	0.073556	1	26050	26050		69.338	31.163	1	4839900			14761	5286	10726	10806	14403	14403					0.005044956721576455
FLDPAQRDLY	10	Unmodified	_FLDPAQRDLY_					0	0	0		ENSG00000142065|ENST00000270001|ZFP14	ENSG00000142065|ENST00000270001|ZFP14	ENSG00000142065|ENST00000270001|ZFP14	MULTI-MSMS	A375_MHC_IP_R2	2	619.713623046875	2	619.31422	1236.61389	-0.80155	-0.00049641	0.31172	0.00019305	-0.48983	-0.00030336	619.3145059023668	70.925	0.55725	71.659	71.402	71.959	0.73421					19	10	3	0	0	0	0.11281	2	26918	26918;26957		60.899	29.631	1	4171900			14762	5286	10726	10806	14404;14405	14404					0.005044956721576455
FLDPASAGIGY	11	Unmodified	_FLDPASAGIGY_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-MSMS	A375_MHC_IP_R1	1	556.489013671875	2	555.776939	1109.53933	-0.468	-0.0002601	0.19572	0.00010878	-0.27228	-0.00015133	555.7769785757783	105.19	1.1661	105.19	104.74	105.91	0					57	22	4	0	0	0	4.5325E-05	1	38536	38536		139.14	95.28	1	12422000			14763	6391	10727	10807	14406	14406					-0.01106267139243755
FLDPASAGIGY	11	Unmodified	_FLDPASAGIGY_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-SECPEP	A375_MHC_IP_R2	2	556.1763305664062	2	555.776939	1109.53933	-0.71515	-0.00039746	-0.028226	-1.5688E-05	-0.74337	-0.00041315	555.7768558239778	104.46	1.4751	105.23	104.85	106.33	0.76308					54	28	3	0	0	0	0.0010421	1	39475	39475		152.41	93.733	1	17877000			14764	6391	10727	10807	14407	14407					-0.01106267139243755
FLDPATPRV	9	Unmodified	_FLDPATPRV_					0	0	0		ENST00000407501.6_1_18:3449895-3450350:+|nuORF;ENST00000343820.9_1_18:3449712-3450399:+|nuORF	ENST00000407501.6_1_18:3449895-3450350:+|nuORF	ENST00000407501.6_1_18:3449895-3450350:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	508.681640625	2	508.282192	1014.54983	-0.45005	-0.00022875	-0.61252	-0.00031133	-1.0626	-0.00054009	508.28188912487576	61.156	0.81431	61.156	60.669	61.483	0					30	15	3	0	0	0	0.10362	1	22025	22025		72.968	14.289	1	9658200			14765	10889	10728	10808	14408	14408					0.04313760305853975
FLDPATPRV	9	Unmodified	_FLDPATPRV_					0	0	0		ENST00000407501.6_1_18:3449895-3450350:+|nuORF;ENST00000343820.9_1_18:3449712-3450399:+|nuORF	ENST00000407501.6_1_18:3449895-3450350:+|nuORF	ENST00000407501.6_1_18:3449895-3450350:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	508.6813049316406	2	508.282192	1014.54983	-1.0477	-0.00053255	-0.90791	-0.00046147	-1.9556	-0.00099402	508.2820120632792	60.351	0.71389	61.096	60.801	61.515	0.74503					47	13	5	0	0	0	0.10362	1	22818	22818		55.503	9.8031	1	12270000			14766	10889	10728	10808	14409	14409					0.04313760305853975
FLDPIRGSSI	10	Unmodified	_FLDPIRGSSI_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MSMS	A375_MHC_IP_R2	2	369.27294921875	3	368.873113	1103.59751	-0.56961	-0.00021011	0.41459	0.00015293	-0.15501	-5.718E-05	368.873185421986	29.078	1.054	29.776	29.584	30.638	0.69872					39	20	2	0	0	0	0.59108	1	10122	10122		14.218	0.6033	1	21451000	+		14767	21924	10729	10809	14410	14410					0.049854145060635346
FLDPNNIPKA	10	Unmodified	_FLDPNNIPKA_					0	0	0		nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8;ENST00000532552.2_1_11:77817934-77820625:-|nuORF	nc|ENSG00000159063|Q9BVK2-2|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	MULTI-MSMS	A375_MHC_IP_R1	1	565.2059326171875	2	564.806031	1127.59751	-0.29679	-0.00016763	0.42585	0.00024052	0.12905	7.289E-05	564.8062752736582	62.581	2.5543	62.581	61.839	64.393	0					118	49	4	0	0	0	2.5819E-05	1	22530	22530		155.95	89.497	1	98372000			14768	6345	10730	10810	14411	14411					0.038814145060541705
FLDPNNIPKA	10	Unmodified	_FLDPNNIPKA_					0	0	0		nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8;ENST00000532552.2_1_11:77817934-77820625:-|nuORF	nc|ENSG00000159063|Q9BVK2-2|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	MULTI-SECPEP	A375_MHC_IP_R2	2	564.1558837890625	2	564.806031	1127.59751	-0.73171	-0.00041328	0.0037452	2.1153E-06	-0.72797	-0.00041116	564.8060268321308	61.828	2.0233	62.57	62.17	64.193	0.74263					112	39	4	0	0	0	0.027024	1	23504	23504		96.936	67.854	1	111920000			14769	6345	10730	10810	14412	14412					0.038814145060541705
FLDPSKSSV	9	Unmodified	_FLDPSKSSV_					0	0	0		ENST00000565460.1_1_16:68288822-68288945:+|nuORF;ENST00000413021.2_2_16:68279208-68293154:+|nuORF;ENSG00000103066|ENST00000219345|PLA2G15	ENST00000565460.1_1_16:68288822-68288945:+|nuORF	ENST00000565460.1_1_16:68288822-68288945:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	490.1717224121094	2	490.258382	978.502212	0.10959	5.3728E-05	-0.21149	-0.00010368	-0.10189	-4.9954E-05	490.2581992665453	44.501	0.81389	44.501	44.216	45.03	0					35	15	3	0	0	0	0.02114	1	15550	15550		82.529	23.85	1	14178000			14770	2418	10731	10811	14413	14413					0.012100613150096251
FLDPSKSSV	9	Unmodified	_FLDPSKSSV_					0	0	0		ENST00000565460.1_1_16:68288822-68288945:+|nuORF;ENST00000413021.2_2_16:68279208-68293154:+|nuORF;ENSG00000103066|ENST00000219345|PLA2G15	ENST00000565460.1_1_16:68288822-68288945:+|nuORF	ENST00000565460.1_1_16:68288822-68288945:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	490.658203125	2	490.258382	978.502212	-0.34926	-0.00017123	-0.21757	-0.00010667	-0.56683	-0.00027789	490.2582283121993	43.786	0.96046	44.555	44.177	45.138	0.7691					40	18	3	0	0	0	0.10362	1	16278	16278		72.968	18.194	1	14100000			14771	2418	10731	10811	14414	14414					0.012100613150096251
FLDQHGHNL	9	Unmodified	_FLDQHGHNL_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	A375_MHC_IP_R2	2	360.62908935546875	3	360.845557	1079.51484	-0.35988	-0.00012986	-0.029636	-1.0694E-05	-0.38952	-0.00014056	360.84547728354926	30.084	0.60805	30.802	30.608	31.216	0.71857					20	11	3	0	0	0	0.67483	1	10645	10645		19.362	15.418	1	2691400			14772	4099;14587	10732	10812	14415	14415					-0.021734825020985227
FLDQNLQKY	9	Unmodified	_FLDQNLQKY_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	MULTI-MSMS	A375_MHC_IP_R2	2	585.2027587890625	2	584.803488	1167.59242	-0.64242	-0.00037569	0.13637	7.9748E-05	-0.50605	-0.00029594	584.8035368436697	55.866	1.4255	56.616	56.237	57.662	0.75015					75	27	4	0	0	0	0.00052266	1	21248	21248		201.57	65.235	1	93495000			14773	2060	10733	10813	14416	14416					0.01533110643413238
FLDRKSKLY	9	Unmodified	_FLDRKSKLY_					0	0	0			REV__ENSG00000102755|ENST00000282397|FLT1	REV__ENSG00000102755|ENST00000282397|FLT1	MULTI-MSMS	A375_MHC_IP_R1	1	390.9600524902344	3	390.560758	1168.66044	0.22149	8.6505E-05	-1.0909	-0.00042607	-0.86943	-0.00033956	390.5598764401452	20.431	1.0689	20.431	19.827	20.895	0					28	20	2	0	0	0	0.66474	1	5101	5101		10.151	0.38632	1	3837100	+		14774	17229	10734	10814	14417	14417					0.08285980294090223
FLDSEVSEL	9	Unmodified	_FLDSEVSEL_					0	0	0		ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	MULTI-SECPEP	A375_MHC_IP_R1	1	520.1535034179688	2	519.75313	1037.49171	-0.48383	-0.00025147	0.04069	2.1149E-05	-0.44314	-0.00023033	519.7530564754602	98.522	1.0669	98.522	98.151	99.218	0					40	20	3	0	0	0	0.05755	1	36139	36139		81.613	24.142	1	7027500			14775	2894	10735	10815	14418	14418					-0.025539661300854277
FLDSEVSEL	9	Unmodified	_FLDSEVSEL_					0	0	0		ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	MULTI-MSMS	A375_MHC_IP_R2	2	1040.39208984375	1	1038.49898	1037.49171	-0.047591	-4.9424E-05	-0.38668	-0.00040157	-0.43427	-0.00045099	1038.4989044553943	97.753	0.71207	98.509	98.128	98.84	0.75586					26	13	3	0	0	0	0.32899	1	37124	37124		28.487	8.0332	1	8674800			14776	2894	10735	10815	14419	14419					-0.025539661300854277
FLDSTGSRLDY	11	Unmodified	_FLDSTGSRLDY_					0	0	0		ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-SECPEP	A375_MHC_IP_R1	1	637.7062377929688	2	637.306592	1272.59863	-0.73441	-0.00046804	0.42055	0.00026802	-0.31386	-0.00020002	637.3068480079589	64.47	1.321	64.47	64.09	65.411	0					64	25	4	0	0	0	0.16379	1	23253	23253		87.123	45.168	1	33527000			14777	4773	10736	10816	14420	14420					-0.026764159156982714
FLDSTGSRLDY	11	Unmodified	_FLDSTGSRLDY_					0	0	0		ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-MSMS	A375_MHC_IP_R2	2	637.7066040039062	2	637.306592	1272.59863	-0.71174	-0.0004536	0.13731	8.751E-05	-0.57443	-0.00036609	637.3066871608337	63.781	1.0174	64.521	64.191	65.208	0.74022					54	19	4	0	0	0	0.0003796	3	24132	24132;24316;24365		112.04	62.487	1	40538000			14778	4773	10736	10816	14421;14422;14423	14421					-0.026764159156982714
FLDSTSPLL	9	Unmodified	_FLDSTSPLL_					0	0	0		nc|ENSG00000136813|Q5VYK3|ECPAS;ENSG00000136813|ENST00000684092|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-SECPEP	A375_MHC_IP_R1	1	992.5582885742188	1	992.529889	991.522613	0.39637	0.00039341	-0.71435	-0.00070902	-0.31799	-0.00031561	992.5288219720139	117.55	0.55802	117.55	117.26	117.82	0					16	10	2	0	0	0	0.011207	1	43168	43168		88.904	34.13	1	11089000			14779	4820	10737	10817	14424	14424					0.026512319748235313
FLDTNETPY	9	Unmodified	_FLDTNETPY_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-SECPEP	A375_MHC_IP_R1	1	550.6504516601562	2	550.250754	1098.48696	-0.54012	-0.0002972	-0.046377	-2.5519E-05	-0.58649	-0.00032272	550.2506558426039	75.085	0.70921	75.085	74.704	75.413	0					32	13	4	0	0	0	0.14422	1	27318	27318		61.357	11.424	1	7264900			14780	1690	10738	10818	14425	14425					-0.05834850272822223
FLDTNETPY	9	Unmodified	_FLDTNETPY_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6502685546875	2	550.250754	1098.48696	-0.82253	-0.0004526	0.70697	0.00038901	-0.11555	-6.3583E-05	550.2508078071035	74.507	0.71217	75.245	74.807	75.519	0.73751					38	13	5	0	0	0	0.11436	1	28228	28228		68.081	46.334	1	7411500			14781	1690	10738	10818	14426	14426					-0.05834850272822223
FLDTQCDSSV	10	Unmodified	_FLDTQCDSSV_					0	0	0		ENSG00000149571|ENST00000525144|KIRREL3	ENSG00000149571|ENST00000525144|KIRREL3	ENSG00000149571|ENST00000525144|KIRREL3	MULTI-SECPEP	A375_MHC_IP_R2	2	557.6679077148438	2	557.739696	1113.46484	-0.58937	-0.00032871	-0.38551	-0.00021501	-0.97488	-0.00054373	558.2406263340301	110.17	0.5124	110.91	110.68	111.19	0.73692					17	9	2	0	0	0	0.74754	1	41662	41662		22.736	0.98964	1	2657000			14782	5816	10739	10819	14427	14427					-0.0873539801291372
FLDWRKMK	8	Unmodified	_FLDWRKMK_					0	0	0		nc|ENSG00000148848|O43184-3|ADAM12;nc|ENSG00000148848|O43184-4|ADAM12;nc|ENSG00000148848|O43184-2|ADAM12;ENSG00000148848|ENST00000448723|ADAM12;nc|ENSG00000148848|O43184|ADAM12	nc|ENSG00000148848|O43184-3|ADAM12	nc|ENSG00000148848|O43184-3|ADAM12	MULTI-SECPEP	A375_MHC_IP_R1	1	562.6685791015625	2	562.307687	1122.60082	-0.18636	-0.00010479	-1.3501	-0.00075915	-1.5364	-0.00086394	562.306852885369	112.02	0.45661	112.02	111.87	112.33	0					14	8	3	0	0	0	0.90775	1	41109	41109		26.884	9.9414	1	1272000			14783	5772	10740	10820	14428	14428					0.04442386079062999
FLDYGLRLGPL	11	Unmodified	_FLDYGLRLGPL_					0	0	0			REV__ENSG00000169962|ENST00000339381|TAS1R3	REV__ENSG00000169962|ENST00000339381|TAS1R3	MSMS	A375_MHC_IP_R2	2	632.7568969726562	2	632.358431	1262.70231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.72	1	137.81	137.31	138.31	0.083969								0	0	0	0.16297	1	54040	54040		3.2813	0	1		+		14784	20958	10741	10821	14429	14429					0.08146535982609748
FLDYRDLINRR	11	Unmodified	_FLDYRDLINRR_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-MSMS	A375_MHC_IP_R1	1	494.6531982421875	3	494.272158	1479.79465	-0.64502	-0.00031882	-0.92768	-0.00045853	-1.5727	-0.00077734	494.27177654104287	30.771	0.50587	30.771	30.553	31.059	0					27	9	4	0	0	0	0.73189	1	9755	9755		3.5927	1.6652	1	16804000			14785	14538	10742	10822	14430	14430					0.07394014048850295
FLEAQIIQW	9	Unmodified	_FLEAQIIQW_					0	0	0		ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-3|GSAP;ENSG00000186088|ENST00000257626|GSAP;GSAP|p.S452F|1|0.33|ENSG00000186088|chr7:77353625-77353625|G/A|missense_variant	ENST00000334003.11_1_7:76959552-77026708:-|nuORF	ENST00000334003.11_1_7:76959552-77026708:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	575.2377319335938	2	574.310949	1146.60735	-0.16047	-9.2161E-05	0.18739	0.00010762	0.02692	1.5461E-05	574.3110821465754	98.076	1.425	98.076	97.59	99.015	0					91	27	5	0	0	0	0.68216	1	35858	35858		8.5933	0.68312	1	143370000			14786	8717	10743	10823	14431	14431					0.03990602511430552
FLECSLTW	8	Unmodified	_FLECSLTW_					0	0	0		ENST00000492403.1_1_7:100403981-100405169:-|nuORF	ENST00000492403.1_1_7:100403981-100405169:-|nuORF	ENST00000492403.1_1_7:100403981-100405169:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	499.13848876953125	2	499.736228	997.457904	-0.21355	-0.00010672	1.8347	0.00091686	1.6211	0.00081015	500.2382518478905	117.69	0.65904	117.69	117.31	117.97	0					30	12	4	0	0	0	0.85124	1	43350	43350		26.341	8.2063	1	8335800			14787	12673	10744	10824	14432	14432					-0.04092666102860676
FLEDLVPYL	9	Unmodified	_FLEDLVPYL_					0	0	0		ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	MULTI-MSMS	A375_MHC_IP_R2	2	1108.8505859375	1	1108.59249	1107.58521	0.22063	0.00024459	-0.65178	-0.00072256	-0.43115	-0.00047797	1108.5924436175003	134.69	0.25325	134.83	134.7	134.95	0.13901					6	4	2	0	0	0	0.083809	1	52953	52953		53.576	30.427	1	2695400			14788	9564	10745	10825	14433	14433					0.03572378043008939
FLEDLVPYL	9	Unmodified	_FLEDLVPYL_					0	0	0		ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	MULTI-MATCH	A375_MHC_IP_R1	1		1	1108.59249	1107.58521	-0.19775	-0.00021923	-0.066132	-7.3314E-05	-0.26388	-0.00029254	1108.591318295173	134.75	0.2038	134.75	134.67	134.88	0	-0.0372	0.00048621	NaN	53.576	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2047300			14789	9564	10745	10825							0.03572378043008939
FLEEESRPQY	10	Unmodified	_FLEEESRPQY_					0	0	0			REV__ENSG00000134262|ENST00000369569|AP4B1	REV__ENSG00000134262|ENST00000369569|AP4B1	MULTI-MSMS	A375_MHC_IP_R2	2	649.7061157226562	2	649.306592	1296.59863	-0.62598	-0.00040645	0.025291	1.6422E-05	-0.60069	-0.00039003	649.30663279515	64.329	0.56118	65.069	64.8	65.361	0.74023					20	10	3	0	0	0	0.70651	1	24398	24398		9.3831	0	1	3198400	+		14790	18765	10746	10826	14434	14434					-0.03780415915684898
FLEEESRPQY	10	Unmodified	_FLEEESRPQY_					0	0	0			REV__ENSG00000134262|ENST00000369569|AP4B1	REV__ENSG00000134262|ENST00000369569|AP4B1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	649.306592	1296.59863	-0.41725	-0.00027093	0.0056526	3.6703E-06	-0.4116	-0.00026726	649.306722792959	64.98	0.50638	64.98	64.75	65.257	0	-0.044547	-9.6635E-06	NaN	9.3831	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2688900	+		14791	18765	10746	10826							-0.03780415915684898
FLEENNLDY	9	Unmodified	_FLEENNLDY_					0	0	0		ENSG00000011485|ENST00000012443|PPP5C;ENST00000527623.1_1_19:46891683-46893600:+|nuORF;ENST00000487483.6_1_19:46891669-46893605:+|nuORF;ENST00000486994.5_1_19:46886892-46893600:+|nuORF	ENSG00000011485|ENST00000012443|PPP5C	ENSG00000011485|ENST00000012443|PPP5C	MULTI-MSMS	A375_MHC_IP_R2	2	578.7058715820312	2	578.761486	1155.50842	-0.25477	-0.00014745	0.42426	0.00024555	0.16949	9.8093E-05	578.7628776772336	82.58	0.76173	83.323	82.735	83.497	0.74293					18	14	2	0	0	0	0.6656	1	31278	31278		10.074	0	1	1791400			14792	1005	10747	10827	14435	14435					-0.06311465244129977
FLEGNSMGMI	10	Unmodified	_FLEGNSMGMI_					0	0	0		PIK3AP1|p.T497I|1|0.27|ENSG00000155629|chr10:96626887-96626887|G/A|missense_variant	PIK3AP1|p.T497I|1|0.27|ENSG00000155629|chr10:96626887-96626887|G/A|missense_variant	PIK3AP1|p.T497I|1|0.27|ENSG00000155629|chr10:96626887-96626887|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	549.751708984375	2	549.751553	1097.48855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.177	1	82.177	81.677	82.677	0								0	0	0	0.14925	1	30044	30044		19.257	2.3147	1				14793	15175	10748	10828	14436	14436					-0.056292557801043586
FLEKERSNL	9	Unmodified	_FLEKERSNL_					0	0	0			REV__tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1	REV__tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	568.7086791992188	2	568.308938	1134.60332	-0.4969	-0.00028239	0.20886	0.0001187	-0.28803	-0.00016369	568.309038915378	28.908	0.45516	28.908	28.694	29.149	0					11	8	2	0	0	0	0.41731	1	9019	9019		24.991	0	1	2209700	+		14794	28350	10749	10829	14437	14437					0.04140513017705416
FLEKLLPPV	9	Unmodified	_FLEKLLPPV_					0	0	0		ENSG00000011009|ENST00000374514|LYPLA2;ENST00000472213.1_1_1:24120901-24121219:+|nuORF	ENSG00000011009|ENST00000374514|LYPLA2	ENSG00000011009|ENST00000374514|LYPLA2	MULTI-MSMS	A375_MHC_IP_R1	1	528.7286376953125	2	528.328611	1054.64267	-0.15481	-8.1791E-05	-0.043851	-2.3168E-05	-0.19866	-0.00010496	528.3285026361982	112.51	4.2169	112.51	112.08	116.29	0					218	82	5	0	0	0	0.016157	5	41371	41371;41575;41795;42014;42272		96.367	42.474	1	116810000			14795	989	10750	10830	14438;14439;14440;14441;14442	14438					0.11753265039214966
FLEKLLPPV	9	Unmodified	_FLEKLLPPV_					0	0	0		ENSG00000011009|ENST00000374514|LYPLA2;ENST00000472213.1_1_1:24120901-24121219:+|nuORF	ENSG00000011009|ENST00000374514|LYPLA2	ENSG00000011009|ENST00000374514|LYPLA2	MULTI-MSMS	A375_MHC_IP_R2	2	528.7283325195312	2	528.328611	1054.64267	-0.32867	-0.00017364	-0.16186	-8.5518E-05	-0.49053	-0.00025916	528.3284617566081	111.7	4.4789	112.43	111.99	116.47	0.72458					242	87	5	0	0	0	0.016157	5	42211	42211;42420;42638;42865;43178		106.94	55.31	1	106810000			14796	989	10750	10830	14443;14444;14445;14446;14447	14443					0.11753265039214966
FLEMNFGVL	9	Unmodified	_FLEMNFGVL_					0	0	0		ENSG00000182359|ENST00000531837|KBTBD3	ENSG00000182359|ENST00000531837|KBTBD3	ENSG00000182359|ENST00000531837|KBTBD3	MSMS	A375_MHC_IP_R2	2	357.2864990234375	3	357.184411	1068.5314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.856	1	69.591	69.091	70.091	0.73511								0	0	0	0.15486	1	26091	26091		2.9952	0	1				14797	8402	10751	10831	14448	14448					-0.00012117660367039207
FLEPEFSKY	9	Unmodified	_FLEPEFSKY_					0	0	0		ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	MULTI-SECPEP	A375_MHC_IP_R1	1	580.651611328125	2	580.28714	1158.55973	-0.2895	-0.00016799	0.048813	2.8326E-05	-0.24069	-0.00013967	580.2870793977811	76.597	0.71287	76.597	76.37	77.083	0					37	13	5	0	0	0	0.11849	1	27971	27971		70.332	30.375	1	10089000			14798	1280	10752	10832	14449	14449					-0.01321096479409789
FLEPEFSKY	9	Unmodified	_FLEPEFSKY_					0	0	0		ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	MULTI-SECPEP	A375_MHC_IP_R2	2	580.686279296875	2	580.28714	1158.55973	-0.28294	-0.00016418	-0.020076	-1.165E-05	-0.30301	-0.00017583	580.2870314335253	75.896	0.96606	76.636	76.385	77.352	0.74052					40	18	4	0	0	0	0.090157	1	28784	28784		76.825	29.076	1	12241000			14799	1280	10752	10832	14450	14450					-0.01321096479409789
FLESENQF	8	Unmodified	_FLESENQF_					0	0	0			REV__ENST00000482751.5_1_1:40208803-40219024:+|nuORF	REV__ENST00000482751.5_1_1:40208803-40219024:+|nuORF	MSMS	A375_MHC_IP_R1	1	507.2052307128906	2	507.232364	1012.45018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.635	1	69.635	69.135	70.135	0								0	0	0	0.16876	1	25273	25273		20.871	3.9289	1		+		14800	25285	10753	10833	14451	14451					-0.055551020987536504
FLESENQF	8	Unmodified	_FLESENQF_					0	0	0			REV__ENST00000482751.5_1_1:40208803-40219024:+|nuORF	REV__ENST00000482751.5_1_1:40208803-40219024:+|nuORF	MSMS	A375_MHC_IP_R2	2	507.2054443359375	2	507.232364	1012.45018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.728	1	69.463	68.963	69.963	0.73511								0	0	0	0.16876	1	26043	26043		20.871	3.9289	1		+		14801	25285	10753	10833	14452	14452					-0.055551020987536504
FLESLLHQL	9	Unmodified	_FLESLLHQL_					0	0	0		MYOC|p.S94F|1|0.72|ENSG00000034971|chr1:171652331-171652331|G/A|missense_variant	MYOC|p.S94F|1|0.72|ENSG00000034971|chr1:171652331-171652331|G/A|missense_variant	MYOC|p.S94F|1|0.72|ENSG00000034971|chr1:171652331-171652331|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6170043945312	2	550.310949	1098.60735	-0.77245	-0.00042509	0.78073	0.00042964	0.0082794	4.5562E-06	550.3111852966371	102.53	1.3728	103.3	103.18	104.55	0.76429					35	26	2	0	0	0	0.37663	1	39007	39007		39.957	0	1	736500			14802	14441	10754	10834	14453	14453					0.06198602511426543
FLETPCEV	8	Unmodified	_FLETPCEV_					0	0	0			REV__nc|ENSG00000151090|P10828-2|THRB	REV__nc|ENSG00000151090|P10828-2|THRB	MSMS	A375_MHC_IP_R1	1	469.16436767578125	2	469.220411	936.426269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.27	1	101.27	100.77	101.77	0								0	0	0	0.16876	1	37221	37221		20.871	1.4322	1		+		14803	27285	10755	10835	14454	14454					-0.04448658856790644
FLETPCEV	8	Unmodified	_FLETPCEV_					0	0	0			REV__nc|ENSG00000151090|P10828-2|THRB	REV__nc|ENSG00000151090|P10828-2|THRB	MSMS	A375_MHC_IP_R2	2	469.1645812988281	2	469.220411	936.426269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.25	1	101.02	100.52	101.52	0.76278								0	0	0	0.16876	1	38016	38016		20.871	1.4322	1		+		14804	27285	10755	10835	14455	14455					-0.04448658856790644
FLEVDLSEIY	10	Unmodified	_FLEVDLSEIY_					0	0	0		ENST00000442834.6_1_1:155629450-155640310:-|nuORF	ENST00000442834.6_1_1:155629450-155640310:-|nuORF	ENST00000442834.6_1_1:155629450-155640310:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	615.2125854492188	2	614.310812	1226.60707	-0.42674	-0.00026215	0.92783	0.00056997	0.50109	0.00030782	614.3119672296455	100.75	0.46233	101.51	101.29	101.75	0.76278					21	8	3	0	0	0	0.70146	1	38192	38192		11.64	0.81637	1	2484900			14805	11999	10756	10836	14456	14456					0.00283138000895633
FLEVDVDDC	9	Unmodified	_FLEVDVDDC_					0	0	0		ENST00000510190.1_1_4:77880016-77880280:-|nuORF;ENSG00000136810|ENST00000374517|TXN	ENST00000510190.1_1_4:77880016-77880280:-|nuORF	ENST00000510190.1_1_4:77880016-77880280:-|nuORF	MSMS	A375_MHC_IP_R2	2	352.1019287109375	3	352.151435	1053.43248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.9	1	108.65	108.15	109.15	0.75436								0	0	0	0.15486	1	40754	40754		0.96228	0	1				14806	4818	10757	10837	14457	14457					-0.09210185415918204
FLEWKLIH	8	Unmodified	_FLEWKLIH_					0	0	0			REV__ENSG00000151748|ENST00000324679|SAV1	REV__ENSG00000151748|ENST00000324679|SAV1	MSMS	A375_MHC_IP_R1	1	362.5976257324219	3	362.542927	1084.60695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.608	1	42.608	42.108	43.108	0								0	0	0	0.16876	1	14772	14772		7.9102	0.43309	1		+		14807	19771	10758	10838	14458	14458					0.06803227582213367
FLFADNMMLY	10	Unmodified	_FLFADNMMLY_					0	0	0		L1M1_dup4528|chr9:5911835-5912397:-|14.08193021188599|0.1044078635288352|7.08|469.0|7|2|sense	L1M1_dup4528|chr9:5911835-5912397:-|14.08193021188599|0.1044078635288352|7.08|469.0|7|2|sense	L1M1_dup4528|chr9:5911835-5912397:-|14.08193021188599|0.1044078635288352|7.08|469.0|7|2|sense	MSMS	A375_MHC_IP_R2	2	632.8109741210938	2	632.790678	1263.5668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.534	1	84.273	83.773	84.773	0.73962								0	0	0	0.15398	1	31750	31750		7.9102	1.187	1				14808	14248	10759	10839	14459	14459					-0.05443823194855213
FLFDGSPTYVL	11	Unmodified	_FLFDGSPTYVL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	A375_MHC_IP_R1	1	630.220947265625	2	629.821347	1257.62814	-0.86891	-0.00054726	0.53617	0.00033769	-0.33274	-0.00020957	629.8214822413252	132.66	0.25496	132.66	132.54	132.79	0					9	4	3	0	0	0	0.66194	1	51163	51163		65.235	65.235	1	5707500			14809	7431	10760	10840	14460	14460					0.009631481004362286
FLFDHLLTL	9	Unmodified	_FLFDHLLTL_					0	0	0		nc|ENSG00000149100|Q7L2H7-2|EIF3M;ENSG00000149100|ENST00000531120|EIF3M	nc|ENSG00000149100|Q7L2H7-2|EIF3M;ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	MULTI-SECPEP	A375_MHC_IP_R1	1	560.2151489257812	2	559.815867	1117.61718	-0.72518	-0.00040597	0.19495	0.00010914	-0.53023	-0.00029683	559.8158273583987	131.63	0.25327	131.63	131.53	131.78	0					12	4	4	0	0	0	0.3213	1	50767	50767		46.021	6.0636	1	4214000			14810	5782;14672	10761	10841	14461	14461					0.06307790516802925
FLFEDFSKA	9	Unmodified	_FLFEDFSKA_					0	0	0		ENSG00000109084|ENST00000226230|TMEM97	ENSG00000109084|ENST00000226230|TMEM97	ENSG00000109084|ENST00000226230|TMEM97	MULTI-SECPEP	A375_MHC_IP_R2	2	551.7076416015625	2	552.274032	1102.53351	-0.62859	-0.00034715	1.215	0.00067099	0.58638	0.00032384	552.2743360675871	99.073	0.55883	99.833	99.556	100.11	0.75977					16	10	2	0	0	0	0.71071	1	37590	37590		14.405	5.0579	1	1351700			14811	2853	10762	10842	14462	14462					-0.013653656509177381
FLFEDFSKA	9	Unmodified	_FLFEDFSKA_					0	0	0		ENSG00000109084|ENST00000226230|TMEM97	ENSG00000109084|ENST00000226230|TMEM97	ENSG00000109084|ENST00000226230|TMEM97	MULTI-MATCH	A375_MHC_IP_R1	1		2	552.274032	1102.53351	-0.55066	-0.00030411	0.094055	5.1944E-05	-0.4566	-0.00025217	552.2740391544297	99.811	0.40266	99.811	99.624	100.03	0	-0.010838	-0.00085309	NaN	14.405	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1332100			14812	2853	10762	10842							-0.013653656509177381
FLFEDGESF	9	Unmodified	_FLFEDGESF_					0	0	0		nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK;ENST00000510927.5_1_4:106967729-107168455:-|nuORF;nc|ENSG00000145348|Q8TEA7-3|TBCK	nc|ENSG00000145348|Q8TEA7-2|TBCK	nc|ENSG00000145348|Q8TEA7-2|TBCK	MULTI-SECPEP	A375_MHC_IP_R1	1	364.2831726074219	3	364.16244	1089.46549	0.023961	8.7255E-06	0.91241	0.00033227	0.93637	0.00034099	364.1630627343047	86.607	0.55608	86.607	86.325	86.881	0					24	10	3	0	0	0	0.81166	1	31848	31848		2.7352	0	1	2757100			14813	5553	10763	10843	14463	14463					-0.07566235301555935
FLFEPVVKA	9	Unmodified	_FLFEPVVKA_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6892700195312	2	525.305136	1048.59572	-0.61897	-0.00032515	0.12223	6.4211E-05	-0.49673	-0.00026094	525.3051801274754	94.975	0.86575	94.975	94.599	95.465	0					36	16	3	0	0	0	0.14572	1	34894	34894		53.833	2.9778	1	8922000			14814	2219	10764	10844	14464	14464					0.07336405488103992
FLFEPVVKA	9	Unmodified	_FLFEPVVKA_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-SECPEP	A375_MHC_IP_R2	2	525.70458984375	2	525.305136	1048.59572	-0.29645	-0.00015573	0.027074	1.4222E-05	-0.26938	-0.00014151	525.305185243808	94.046	1.2656	94.791	94.412	95.678	0.74474					46	24	4	0	0	0	0.11711	1	35730	35730		69.105	36.799	1	8748900			14815	2219	10764	10844	14465	14465					0.07336405488103992
FLFFAREQIN	10	Unmodified	_FLFFAREQIN_					0	0	0			REV__nc|ENSG00000124126|Q8TCU6-3|PREX1	REV__nc|ENSG00000124126|Q8TCU6-3|PREX1	MULTI-MSMS	A375_MHC_IP_R2	2	643.2401733398438	2	642.840405	1283.66626	-0.68465	-0.00044012	-0.20387	-0.00013106	-0.88852	-0.00057117	642.8404603378143	126.56	0.70634	126.86	126.63	127.34	0.2951					22	13	3	0	0	0	0.21466	1	49559	49559		47.749	2.0491	1	32955000	+		14816	18272	10765	10845	14466	14466					0.03577078805756173
FLFFWFFL	8	Unmodified	_FLFFWFFL_					0	0	0		ENST00000471799.1_1_22:26886916-26887635:+|nuORF	ENST00000471799.1_1_22:26886916-26887635:+|nuORF	ENST00000471799.1_1_22:26886916-26887635:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	584.400146484375	2	583.807314	1165.60008	0.015799	9.2238E-06	-1.4663	-0.00085606	-1.4505	-0.00084683	583.805924583297	92.631	0.91571	92.631	92.312	93.228	0					22	17	2	0	0	0	0.77554	1	34128	34128		11.114	0.29054	1	2304800			14817	12358	10766	10846	14467	14467					0.023899147016436473
FLFFWFFL	8	Unmodified	_FLFFWFFL_					0	0	0		ENST00000471799.1_1_22:26886916-26887635:+|nuORF	ENST00000471799.1_1_22:26886916-26887635:+|nuORF	ENST00000471799.1_1_22:26886916-26887635:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	584.2086791992188	2	583.807314	1165.60008	-0.22938	-0.00013391	1.7298	0.0010099	1.5004	0.00087596	583.8083767323596	89.518	0.50837	89.518	89.171	89.679	0					15	9	2	0	0	0	0.85371	1	32900	32900		24.21	0	1	1949600			14818	12358	10766	10846	14468	14468					0.023899147016436473
FLFFWFFL	8	Unmodified	_FLFFWFFL_					0	0	0		ENST00000471799.1_1_22:26886916-26887635:+|nuORF	ENST00000471799.1_1_22:26886916-26887635:+|nuORF	ENST00000471799.1_1_22:26886916-26887635:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	583.3682861328125	2	583.807314	1165.60008	-0.36287	-0.00021185	2.0563	0.0012005	1.6934	0.00098864	583.8086544909796	88.674	0.50696	89.406	89.128	89.635	0.7318					14	9	2	0	0	0	0.72845	1	33738	33738		32.454	0.41617	1	2338300			14819	12358	10766	10846	14469	14469					0.023899147016436473
FLFGEPKRL	9	Unmodified	_FLFGEPKRL_					0	0	0		nc|ENSG00000185247|P43364-2|MAGEA11;ENST00000518694.1_1_X:148796119-148798433:+|nuORF;ENSG00000185247|ENST00000355220|MAGEA11	nc|ENSG00000185247|P43364-2|MAGEA11	nc|ENSG00000185247|P43364-2|MAGEA11	MULTI-MSMS	A375_MHC_IP_R1	1	370.28485107421875	3	369.550082	1105.62842	0.24828	9.1751E-05	0.15349	5.6722E-05	0.40177	0.00014847	369.5501158329595	64.56	0.76333	64.56	64.242	65.005	0					30	14	3	0	0	0	0.32889	1	23337	23337		28.495	0	1	4849200			14820	8652	10767	10847	14470	14470					0.07982612610953765
FLFGEPKRL	9	Unmodified	_FLFGEPKRL_					0	0	0		nc|ENSG00000185247|P43364-2|MAGEA11;ENST00000518694.1_1_X:148796119-148798433:+|nuORF;ENSG00000185247|ENST00000355220|MAGEA11	nc|ENSG00000185247|P43364-2|MAGEA11	nc|ENSG00000185247|P43364-2|MAGEA11	MULTI-MSMS	A375_MHC_IP_R2	2	369.9502868652344	3	369.550082	1105.62842	0.35095	0.0001297	-0.36167	-0.00013366	-0.01072	-3.9617E-06	369.54993831407035	63.53	1.221	64.27	63.936	65.157	0.74022					42	23	3	0	0	0	0.21241	1	24062	24062		37.075	0	1	5078700			14821	8652	10767	10847	14471	14471					0.07982612610953765
FLFGEVHKA	9	Unmodified	_FLFGEVHKA_					0	0	0		ENSG00000065328|ENST00000378714|MCM10;nc|ENSG00000065328|Q7L590|MCM10	ENSG00000065328|ENST00000378714|MCM10	ENSG00000065328|ENST00000378714|MCM10	MULTI-MSMS	A375_MHC_IP_R1	1	524.6843872070312	2	524.284734	1046.55492	-0.36944	-0.00019369	0.47247	0.00024771	0.10304	5.4021E-05	524.285154258273	49.993	0.71571	49.993	49.692	50.408	0					25	13	3	0	0	0	0.27064	1	17728	17728		32.786	5.1569	1	2260500			14822	1377	10768	10848	14472	14472					0.03350064168489553
FLFGEVHKA	9	Unmodified	_FLFGEVHKA_					0	0	0		ENSG00000065328|ENST00000378714|MCM10;nc|ENSG00000065328|Q7L590|MCM10	ENSG00000065328|ENST00000378714|MCM10	ENSG00000065328|ENST00000378714|MCM10	MULTI-MATCH	A375_MHC_IP_R2	2		2	524.284734	1046.55492	-0.69252	-0.00036308	1.3508	0.00070822	0.6583	0.00034514	524.7867053257355	49.009	0.71053	49.767	49.536	50.247	0.75737	-0.11341	0.00043617	NaN	32.786	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2410300			14823	1377	10768	10848							0.03350064168489553
FLFGPCFF	8	Unmodified	_FLFGPCFF_					0	0	0		ENSG00000268964|ENST00000601417|ERVV-2	ENSG00000268964|ENST00000601417|ERVV-2	ENSG00000268964|ENST00000601417|ERVV-2	MULTI-SECPEP	A375_MHC_IP_R1	1	489.6518249511719	2	489.233125	976.451696	0.043342	2.1205E-05	1.2853	0.0006288	1.3286	0.00065001	489.2335954556085	45.492	0.55572	45.492	45.081	45.636	0					12	10	2	0	0	0	0.95327	1	15764	15764		11.114	3.2043	1	1004100			14824	9974	10769	10849	14473	14473					-0.03747139543713729
FLFGYPKRL	9	Unmodified	_FLFGYPKRL_					0	0	0		ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	MULTI-MSMS	A375_MHC_IP_R1	1	381.2906494140625	3	380.890327	1139.64915	0.29778	0.00011342	0.14193	5.406E-05	0.43971	0.00016748	380.89030595574104	76.076	1.2169	76.076	75.764	76.981	0					51	23	4	0	0	0	0.14858	1	27687	27687		41.956	30.461	1	10097000			14825	8079	10770	10850	14474	14474					0.08491202990603597
FLFGYPKRL	9	Unmodified	_FLFGYPKRL_					0	0	0		ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	MULTI-MSMS	A375_MHC_IP_R2	2	381.2903747558594	3	380.890327	1139.64915	-0.057846	-2.2033E-05	0.099061	3.7731E-05	0.041215	1.5698E-05	380.89032869513204	75.16	1.3726	75.897	75.467	76.84	0.73752					54	26	3	0	0	0	0.14858	1	28474	28474		41.956	25.806	1	12940000			14826	8079	10770	10850	14475	14475					0.08491202990603597
FLFILKAQEH	10	Unmodified	_FLFILKAQEH_					0	0	0		ENST00000535593.5_1_12:21668961-21669006:+|nuORF	ENST00000535593.5_1_12:21668961-21669006:+|nuORF	ENST00000535593.5_1_12:21668961-21669006:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	624.4462890625	2	623.353148	1244.69174	-0.7884	-0.00049145	-0.27633	-0.00017225	-1.0647	-0.0006637	623.352214908433	129.96	2.2771	130.18	128.63	130.91	0.2142					96	44	3	0	0	0	0.70329	1	50890	50890		10.824	2.6684	1	16128000			14827	13229	10771	10851	14476	14476					0.07918553328204325
FLFLLYFIGGY	11	Unmodified	_FLFLLYFIGGY_					0	0	0		tr|U7SVU6|U7SVU6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01344PE=4SV=1	tr|U7SVU6|U7SVU6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01344PE=4SV=1	tr|U7SVU6|U7SVU6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01344PE=4SV=1	MSMS	A375_MHC_IP_R1	1	676.8676147460938	2	676.8681	1351.72165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.026	1	86.026	85.526	86.526	0								0	0	0	0.1629	1	31536	31536		3.5965	0	1				14828	29798	10772	10852	14477	14477					0.05985492273521231
FLFNKVVNL	9	Unmodified	_FLFNKVVNL_					0	0	0		ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	MULTI-SECPEP	A375_MHC_IP_R1	1	547.7234497070312	2	547.32386	1092.63317	-0.29083	-0.00015918	-0.20318	-0.0001112	-0.494	-0.00027038	547.3237104928203	107.72	0.71207	107.72	107.49	108.21	0					21	13	2	0	0	0	0.019499	1	39528	39528		128.37	60.285	1	4179000			14829	3624	10773	10853	14478	14478					0.0905549675369457
FLFNKVVNL	9	Unmodified	_FLFNKVVNL_					0	0	0		ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	MULTI-SECPEP	A375_MHC_IP_R2	2	547.72314453125	2	547.32386	1092.63317	-0.85293	-0.00046683	-0.006745	-3.6917E-06	-0.85968	-0.00047052	547.323793598589	106.76	0.60849	107.52	107.24	107.85	0.75977					29	11	4	0	0	0	0.011357	1	40341	40341		141.83	73.746	1	4025600			14830	3624	10773	10853	14479	14479					0.0905549675369457
FLFNTENKL	9	Unmodified	_FLFNTENKL_					0	0	0		nc|ENSG00000067064|Q13907|IDI1;ENSG00000067064|ENST00000381344|IDI1	nc|ENSG00000067064|Q13907|IDI1	nc|ENSG00000067064|Q13907|IDI1	MULTI-SECPEP	A375_MHC_IP_R1	1	563.6998291015625	2	563.300581	1124.58661	-0.34182	-0.00019255	0.066353	3.7376E-05	-0.27547	-0.00015517	563.3007788616728	81.848	1.0141	81.848	81.455	82.469	0					42	19	3	0	0	0	0.070665	1	29876	29876		78.728	20.049	1	8397000			14831	1425	10774	10854	14480	14480					0.029300121317419325
FLFNTENKL	9	Unmodified	_FLFNTENKL_					0	0	0		nc|ENSG00000067064|Q13907|IDI1;ENSG00000067064|ENST00000381344|IDI1	nc|ENSG00000067064|Q13907|IDI1	nc|ENSG00000067064|Q13907|IDI1	MULTI-SECPEP	A375_MHC_IP_R2	2	563.7002563476562	2	563.300581	1124.58661	-0.61553	-0.00034673	-0.37768	-0.00021275	-0.99321	-0.00055947	563.300363370552	80.925	1.0699	81.67	80.961	82.03	0.74473					38	20	4	0	0	0	0.011107	1	30701	30701		122.18	29.526	1	8494200			14832	1425	10774	10854	14481	14481					0.029300121317419325
FLFPGTENQEL	11	Unmodified	_FLFPGTENQEL_					0	0	0		NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	648.2179565429688	2	647.819335	1293.62412	-0.6093	-0.00039472	0.31636	0.00020495	-0.29294	-0.00018977	647.819534638948	119.48	0.45557	120.01	119.79	120.24	0.5321					14	8	2	0	0	0	0.00036454	1	45538	45538		114.19	81.881	1	9976200			14833	4441	10775	10855	14482	14482					-0.010949413932848984
FLFPRSIDV	9	Unmodified	_FLFPRSIDV_					0	0	0		ENSG00000106460|ENST00000396668|TMEM106B;ENST00000420833.5_1_7:12258097-12270062:+|nuORF	ENSG00000106460|ENST00000396668|TMEM106B	ENSG00000106460|ENST00000396668|TMEM106B	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6835327148438	2	547.305667	1092.59678	-0.50897	-0.00027856	0.41185	0.00022541	-0.097122	-5.3155E-05	547.3058480689625	104.28	0.96499	104.28	103.93	104.89	0					39	18	3	0	0	0	0.13208	1	38352	38352		49.554	21.925	1	12601000			14834	2692	10776	10856	14483	14483					0.05418619856982332
FLFPRSIDV	9	Unmodified	_FLFPRSIDV_					0	0	0		ENSG00000106460|ENST00000396668|TMEM106B;ENST00000420833.5_1_7:12258097-12270062:+|nuORF	ENSG00000106460|ENST00000396668|TMEM106B	ENSG00000106460|ENST00000396668|TMEM106B	MULTI-SECPEP	A375_MHC_IP_R2	2	547.7052001953125	2	547.305667	1092.59678	-0.76289	-0.00041753	0.18812	0.00010296	-0.57477	-0.00031457	547.3056718317563	103.36	1.0658	104.12	103.79	104.85	0.76428					46	20	4	0	0	0	0.0575	1	39107	39107		76.825	29.076	1	11844000			14835	2692	10776	10856	14484	14484					0.05418619856982332
FLFQEPRSI	9	Unmodified	_FLFQEPRSI_					0	0	0		nc|ENSG00000163946|Q9UK61-2|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-2|TASOR	nc|ENSG00000163946|Q9UK61-2|TASOR	MULTI-SECPEP	A375_MHC_IP_R1	1	569.2076416015625	2	568.808574	1135.60259	-0.53225	-0.00030275	0.17299	9.8397E-05	-0.35926	-0.00020435	568.8085575244035	85.235	1.171	85.235	84.8	85.971	0					61	22	4	0	0	0	0.03109	1	31164	31164		92.653	44.307	1	18148000			14836	6751	10777	10857	14485	14485					0.04021718368676375
FLFQEPRSI	9	Unmodified	_FLFQEPRSI_					0	0	0		nc|ENSG00000163946|Q9UK61-2|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-2|TASOR	nc|ENSG00000163946|Q9UK61-2|TASOR	MULTI-SECPEP	A375_MHC_IP_R2	2	569.2078857421875	2	568.808574	1135.60259	-0.24997	-0.00014218	-0.20796	-0.00011829	-0.45792	-0.00026047	568.808423290845	84.404	0.86323	85.14	84.711	85.574	0.73602					42	16	3	0	0	0	0.048303	1	32013	32013		83.429	37.408	1	21588000			14837	6751	10777	10857	14486	14486					0.04021718368676375
FLFRDILEL	9	Unmodified	_FLFRDILEL_					0	0	0		nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	MULTI-MSMS	A375_MHC_IP_R1	1	583.2344360351562	2	583.334424	1164.6543	-0.44403	-0.00025902	1.9541	0.0011399	1.5101	0.00088087	583.3356334821793	129.73	0.5576	129.73	129.45	130.01	0					15	10	2	0	0	0	0.15441	1	49906	49906		43.982	7.9376	1	10300000			14838	3143	10778	10858	14487	14487					0.0785546206257095
FLFSKFIEL	9	Unmodified	_FLFSKFIEL_					0	0	0		ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1;ENST00000496932.1_1_1:43830369-43830754:-|nuORF;ENST00000468865.6_1_1:43829752-43830910:-|nuORF;ENST00000464204.5_1_1:43830107-43833598:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	572.7247314453125	2	572.326068	1142.63758	-0.17397	-9.9566E-05	-1.5011	-0.00085912	-1.6751	-0.00095868	572.325214491967	128.51	0.30321	128.51	128.38	128.68	0					12	5	3	0	0	0	0.015196	1	49363	49363		107.1	6.7281	1	15112000			14839	1408	10779	10859	14488	14488					0.07196961176623518
FLFSKFIEL	9	Unmodified	_FLFSKFIEL_					0	0	0		ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1;ENST00000496932.1_1_1:43830369-43830754:-|nuORF;ENST00000468865.6_1_1:43829752-43830910:-|nuORF;ENST00000464204.5_1_1:43830107-43833598:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	572.725341796875	2	572.326068	1142.63758	-0.3376	-0.00019322	0.17457	9.9908E-05	-0.16304	-9.3309E-05	572.3260391857157	128.2	0.20428	128.44	128.35	128.55	0.23946					9	3	3	0	0	0	0.030222	1	50342	50342		80.676	2.5266	1	9037400			14840	1408	10779	10859	14489	14489					0.07196961176623518
FLFSTVKAESS	11	Unmodified	_FLFSTVKAESS_					0	0	0		nc|ENSG00000153560|Q9NZI7-4|UBP1;ENSG00000153560|ENST00000283629|UBP1;ENST00000466441.5_1_3:33431825-33437792:-|nuORF	nc|ENSG00000153560|Q9NZI7-4|UBP1	nc|ENSG00000153560|Q9NZI7-4|UBP1	MULTI-MSMS	A375_MHC_IP_R2	2	608.715576171875	2	608.316428	1214.6183	-0.48493	-0.00029499	0.54214	0.00032979	0.057213	3.4804E-05	608.3165943284008	128.72	1.6697	128.96	128.6	130.27	0.23946					71	32	3	0	0	0	0.73135	1	50526	50526		7.609	0.50723	1	10411000			14841	6036	10780	10860	14490	14490					0.019579600950464737
FLFTARHLVRR	11	Unmodified	_FLFTARHLVRR_					0	0	0		ENST00000271417.7_1_1:166883354-166883594:-|nuORF	ENST00000271417.7_1_1:166883354-166883594:-|nuORF	ENST00000271417.7_1_1:166883354-166883594:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	472.6834411621094	3	472.6176	1414.83097	-0.46351	-0.00021906	0.90263	0.0004266	0.43912	0.00020753	472.61799626785324	134.36	0.81097	134.5	134.34	135.15	0.13901					25	15	2	0	0	0	0.73332	1	53027	53027		2.6312	1.1761	1	1741800			14842	10381	10781	10861	14491	14491					0.140149357361679
FLFVLAVG	8	Unmodified	_FLFVLAVG_					0	0	0		nc|ENSG00000158865|Q8WWX8-5|SLC5A11;nc|ENSG00000158865|Q8WWX8-2|SLC5A11;ENSG00000158865|ENST00000424767|SLC5A11;nc|ENSG00000158865|Q8WWX8-4|SLC5A11	nc|ENSG00000158865|Q8WWX8-5|SLC5A11	nc|ENSG00000158865|Q8WWX8-5|SLC5A11	MULTI-MSMS	A375_MHC_IP_R2	2	433.6628112792969	2	433.262739	864.510926	-0.059275	-2.5682E-05	-0.69591	-0.00030151	-0.75518	-0.00032719	433.2625277435119	141.97	0.25104	142	141.92	142.18	0.030731					9	4	3	0	0	0	0.77781	1	55535	55535		2.8892	0	1	1650200			14843	6338	10782	10862	14492	14492					0.07325079742133767
FLFYWNLY	8	Unmodified	_FLFYWNLY_					0	0	0		ENSG00000186912|ENST00000374519|P2RY4	ENSG00000186912|ENST00000374519|P2RY4	ENSG00000186912|ENST00000374519|P2RY4	MULTI-MSMS	A375_MHC_IP_R1	1	583.1756591796875	2	583.289485	1164.56442	-0.17385	-0.0001014	-0.47647	-0.00027792	-0.65032	-0.00037932	583.2891738629801	97.842	1.0153	97.842	97.44	98.455	0					27	19	2	0	0	0	0.72109	1	36080	36080		28.173	1.9051	1	4365400			14844	8791	10783	10863	14493	14493					-0.011281675459940743
FLGDDVFLREL	11	Unmodified	_FLGDDVFLREL_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	A375_MHC_IP_R2	2	662.42041015625	2	662.350803	1322.68705	-0.82083	-0.00054368	1.8619	0.0012332	1.0411	0.00068957	662.8535779498955	126.31	0.25163	126.61	126.53	126.78	0.2951					7	4	2	0	0	0	0.64288	1	49395	49395		19.987	9.913	1	5242600			14845	2187	10784	10864	14494	14494					0.03861624394744467
FLGEKYIRRV	10	Unmodified	_FLGEKYIRRV_					0	0	0		ENST00000511075.5_1_4:39457912-39460059:-|nuORF;ENSG00000163682|ENST00000295955|RPL9;ENST00000561773.1_1_15:66671752-66672088:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	428.3216247558594	3	427.587307	1279.74009	0.10043	4.2944E-05	-0.31629	-0.00013524	-0.21585	-9.2296E-05	427.58708799145995	49.807	0.45848	49.807	49.54	49.998	0					19	8	3	0	0	0	0.50967	1	17614	17614		18.721	2.9826	1	5429900			14846	6707	10785	10865	14495	14495					0.11141046968032242
FLGEKYIRRV	10	Unmodified	_FLGEKYIRRV_					0	0	0		ENST00000511075.5_1_4:39457912-39460059:-|nuORF;ENSG00000163682|ENST00000295955|RPL9;ENST00000561773.1_1_15:66671752-66672088:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	427.9871826171875	3	427.587307	1279.74009	-0.31363	-0.00013411	-0.15531	-6.641E-05	-0.46895	-0.00020052	427.58723672696163	48.881	0.51034	49.639	49.434	49.944	0.75736					26	9	4	0	0	0	0.42311	1	18352	18352		22.775	10.6	1	6562400			14847	6707	10785	10865	14496	14496					0.11141046968032242
FLGEKYIRRV	10	Unmodified	_FLGEKYIRRV_					0	0	0		ENST00000511075.5_1_4:39457912-39460059:-|nuORF;ENSG00000163682|ENST00000295955|RPL9;ENST00000561773.1_1_15:66671752-66672088:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	427.587307	1279.74009	0.10043	4.2944E-05	-0.31629	-0.00013524	-0.21585	-9.2296E-05	427.58708799145995	49.807	0.45848	49.807	49.54	49.998	0	0.084141	-0.00010511	NaN	22.775	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5429900			14848	6707	10785	10865							0.11141046968032242
FLGGPWLEQLQ	11	Unmodified	_FLGGPWLEQLQ_					0	0	0			REV__ENSG00000068878|ENST00000404125|PSME4	REV__ENSG00000068878|ENST00000404125|PSME4	MULTI-SECPEP	A375_MHC_IP_R2	2	644.7412719726562	2	644.340238	1286.66592	-0.62839	-0.0004049	0.43211	0.00027842	-0.19628	-0.00012647	644.3404182176911	69.972	0.86533	70.706	70.233	71.099	0.73421					30	16	2	0	0	0	0.88813	1	26520	26520		14.405	0	1	2715900	+		14849	16548	10786	10866	14497	14497					0.034056590858881464
FLGHDTELY	9	Unmodified	_FLGHDTELY_					0	0	0			REV__PTCH1|p.P1402L|1|0.55|ENSG00000185920|chr9:95447051-95447051|G/A|missense_variant	REV__PTCH1|p.P1402L|1|0.55|ENSG00000185920|chr9:95447051-95447051|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	548.6710815429688	2	547.761289	1093.50803	-0.42987	-0.00023547	-0.36401	-0.00019939	-0.79388	-0.00043486	547.7611329782068	105.41	0.86259	105.41	105.1	105.96	0					36	16	3	0	0	0	0.40079	1	38651	38651		24.674	1.5255	1	8631000	+		14850	27853	10787	10867	14498	14498					-0.03498840173347162
FLGHDTELY	9	Unmodified	_FLGHDTELY_					0	0	0			REV__PTCH1|p.P1402L|1|0.55|ENSG00000185920|chr9:95447051-95447051|G/A|missense_variant	REV__PTCH1|p.P1402L|1|0.55|ENSG00000185920|chr9:95447051-95447051|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6495361328125	2	547.761289	1093.50803	-0.42987	-0.00023547	-0.36401	-0.00019939	-0.79388	-0.00043486	547.7611329782068	105.41	0.86259	105.41	105.1	105.96	0					36	16	3	0	0	0	0.60012	1	38612	38612		24.674	5.4169	1	8631000	+		14851	27853	10787	10867	14499	14499					-0.03498840173347162
FLGKELEDA	9	Unmodified	_FLGKELEDA_					0	0	0			REV__tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	REV__tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	MSMS	A375_MHC_IP_R1	1	511.20745849609375	2	511.263665	1020.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.108	1	93.108	92.608	93.608	0								0	0	0	0.14359	1	34222	34222		28.487	4.4663	1		+		14852	28523	10788	10868	14500	14500					0.003340439694284214
FLGKIYQI	8	Unmodified	_FLGKIYQI_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	A375_MHC_IP_R1	1	491.69183349609375	2	491.292028	980.569503	-0.47398	-0.00023286	-0.016487	-8.0999E-06	-0.49046	-0.00024096	491.2919667343158	80.607	1.5201	80.607	80.34	81.86	0					51	29	4	0	0	0	0.18412	1	29407	29407		93.883	19.487	1	12318000			14853	5930	10789	10869	14501	14501					0.07844136316600725
FLGKIYQI	8	Unmodified	_FLGKIYQI_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	A375_MHC_IP_R2	2	491.6915588378906	2	491.292028	980.569503	-0.46009	-0.00022604	-0.30496	-0.00014982	-0.76505	-0.00037586	491.29172421121547	79.675	1.166	80.42	79.946	81.112	0.74474					48	22	4	0	0	0	0.16801	1	30214	30214		74.396	0	1	11981000			14854	5930	10789	10869	14502	14502					0.07844136316600725
FLGLGSLAVS	10	Unmodified	_FLGLGSLAVS_					0	0	0			REV__ENST00000593008.1_1_19:14523585-14524032:-|nuORF	REV__ENST00000593008.1_1_19:14523585-14524032:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	481.66217041015625	2	482.279118	962.543683	-0.75919	-0.00036614	0.31711	0.00015294	-0.44208	-0.0002132	482.279260510362	65.679	1.4275	66.417	65.968	67.395	0.73812					60	27	4	0	0	0	0.42954	1	24880	24880		49.933	1.5872	1	17148000	+		14855	26392	10790	10870	14503	14503					0.06091242074330694
FLGNKMNRAY	10	Unmodified	_FLGNKMNRAY_					0	0	0		tr|U7T2L1|U7T2L1_FUSNUChromosomalreplicationinitiatorDnaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00745PE=4SV=1	tr|U7T2L1|U7T2L1_FUSNUChromosomalreplicationinitiatorDnaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00745PE=4SV=1	tr|U7T2L1|U7T2L1_FUSNUChromosomalreplicationinitiatorDnaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00745PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	607.7115478515625	2	607.310958	1212.60736	-0.26535	-0.00016115	3.1736	0.0019273	2.9082	0.0017662	607.312090793673	57.047	0.50959	57.047	56.804	57.313	0					14	9	2	0	0	0	0.90853	1	20522	20522		10.824	1.4408	1	2013700			14856	29938	10791	10871	14504	14504					0.009562792397900921
FLGPEPKSV	9	Unmodified	_FLGPEPKSV_					0	0	0		ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	MULTI-SECPEP	A375_MHC_IP_R1	1	487.6709899902344	2	487.271293	972.528032	-0.26043	-0.0001269	-0.011322	-5.5169E-06	-0.27175	-0.00013242	487.27126506349856	46.256	1.0111	46.256	45.941	46.952	0					48	19	4	0	0	0	0.076731	1	16187	16187		80.676	42.702	1	29210000			14857	7591	10792	10872	14505	14505					0.040669555572890204
FLGPEPKSV	9	Unmodified	_FLGPEPKSV_					0	0	0		ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	MULTI-SECPEP	A375_MHC_IP_R2	2	487.6709899902344	2	487.271293	972.528032	-0.6213	-0.00030274	0.2448	0.00011929	-0.3765	-0.00018346	487.2714153370193	45.46	1.0091	46.225	45.897	46.906	0.76519					49	19	4	0	0	0	0.025037	1	16941	16941		100.09	42.619	1	34879000			14858	7591	10792	10872	14506	14506					0.040669555572890204
FLGPWPAAS	9	Unmodified	_FLGPWPAAS_					0	0	0		ENSG00000163956|ENST00000650182|LRPAP1;ENST00000509198.1_1_4:3521942-3534139:-|nuORF	ENSG00000163956|ENST00000650182|LRPAP1	ENSG00000163956|ENST00000650182|LRPAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	945.6627807617188	1	945.482879	944.475603	-0.2214	-0.00020933	-0.077442	-7.322E-05	-0.29884	-0.00028255	945.4823648160383	107.79	0.5113	108.55	108.25	108.76	0.75436					15	9	2	0	0	0	0.3243	1	40653	40653		44.407	7.9409	1	3352100			14859	6753	10793	10873	14507	14507					0.0011441721431992846
FLGPWPAAS	9	Unmodified	_FLGPWPAAS_					0	0	0		ENSG00000163956|ENST00000650182|LRPAP1;ENST00000509198.1_1_4:3521942-3534139:-|nuORF	ENSG00000163956|ENST00000650182|LRPAP1	ENSG00000163956|ENST00000650182|LRPAP1	MULTI-MATCH	A375_MHC_IP_R1	1		1	945.482879	944.475603	0.27871	0.00026352	0.59695	0.00056441	0.87567	0.00082793	945.4834227479146	108.55	0.55882	108.55	108.21	108.76	0	0.00089184	0.00037844	NaN	44.407	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2854700			14860	6753	10793	10873							0.0011441721431992846
FLGRDTYGV	9	Unmodified	_FLGRDTYGV_					0	0	0		nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;nc|ENSG00000070669|P08243-3|ASNS;ENST00000495255.1_1_7:97493514-97498468:-|nuORF;ASNS|p.P144L|1|0.49|ENSG00000070669|chr7:97864315-97864315|G/A|missense_variant	nc|ENSG00000070669|P08243-2|ASNS	nc|ENSG00000070669|P08243-2|ASNS	MULTI-SECPEP	A375_MHC_IP_R2	2	514.6942138671875	2	514.263999	1026.51345	-1.1142	-0.00057297	0.019612	1.0086E-05	-1.0945	-0.00056288	514.263966344453	58.716	0.66118	59.464	59.235	59.896	0.74714					22	12	2	0	0	0	0.20451	1	22243	22243		57.722	32.323	1	8262700			14861	1496	10794	10874	14508	14508					0.0012488340912568674
FLGRRKRKRA	10	Unmodified	_FLGRRKRKRA_					0	0	0			REV__ENST00000327111.7_1_5:92919409-92919580:+|nuORF	REV__ENST00000327111.7_1_5:92919409-92919580:+|nuORF	MSMS	A375_MHC_IP_R2	2	644.3997192382812	2	644.415272	1286.81599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.033	1	67.769	67.269	68.269	0.73631								0	0	0	0.1552	1	25395	25395		3.9444	0	1		+		14862	23607	10795	10875	14509	14509					0.18405488658868308
FLGRRLVLS	9	Unmodified	_FLGRRLVLS_					0	0	0		ENSG00000213699|ENST00000344420|SLC35F6	ENSG00000213699|ENST00000344420|SLC35F6	ENSG00000213699|ENST00000344420|SLC35F6	MULTI-SECPEP	A375_MHC_IP_R2	2	531.2340087890625	2	530.834926	1059.6553	-0.66999	-0.00035565	-0.51222	-0.00027191	-1.1822	-0.00062756	530.834512428439	75.129	0.35358	75.866	75.721	76.075	0.73751					11	6	2	0	0	0	0.71541	1	28584	28584		16.942	1.0951	1	1617400			14863	9579	10796	10876	14510	14510					0.12785721222144275
FLGSFIDHV	9	Unmodified	_FLGSFIDHV_					0	0	0		chr8:93795221-93795409|359|17.44|0.79|4.46|+|ENST00000519845|TMEM67,TMEM67;ENST00000474944.5_1_8:94767142-94822123:+|nuORF;ENSG00000164953|ENST00000453321|TMEM67	chr8:93795221-93795409|359|17.44|0.79|4.46|+|ENST00000519845|TMEM67,TMEM67	chr8:93795221-93795409|359|17.44|0.79|4.46|+|ENST00000519845|TMEM67,TMEM67	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1681518554688	2	517.768917	1033.52328	-0.85338	-0.00044185	0.89323	0.00046249	0.039857	2.0637E-05	517.7690205112597	97.583	1.1706	98.339	97.923	99.094	0.75586					32	22	3	0	0	0	0.16229	1	37055	37055		48.346	26.599	1	1905200			14864	510	10797	10877	14511	14511					0.007860714144953818
FLGTDRGTV	9	Unmodified	_FLGTDRGTV_					0	0	0		ENSG00000075223|ENST00000265361|SEMA3C;nc|ENSG00000001617|Q13275-2|SEMA3F;ENSG00000001617|ENST00000002829|SEMA3F	ENSG00000075223|ENST00000265361|SEMA3C;nc|ENSG00000001617|Q13275-2|SEMA3F	ENSG00000075223|ENST00000265361|SEMA3C	MULTI-SECPEP	A375_MHC_IP_R1	1	483.6560974121094	2	483.256174	964.497795	-0.30298	-0.00014642	1.8195	0.00087927	1.5165	0.00073285	483.25710145783916	37.633	1.1743	37.633	37.249	38.423	0					33	22	2	0	0	0	0.11436	1	12704	12704		68.081	3.8444	1	5774400			14865	1603;847	10798	10878	14512	14512					0.014125968921121057
FLGTDRGTV	9	Unmodified	_FLGTDRGTV_					0	0	0		ENSG00000075223|ENST00000265361|SEMA3C;nc|ENSG00000001617|Q13275-2|SEMA3F;ENSG00000001617|ENST00000002829|SEMA3F	ENSG00000075223|ENST00000265361|SEMA3C;nc|ENSG00000001617|Q13275-2|SEMA3F	ENSG00000075223|ENST00000265361|SEMA3C	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6560974121094	2	483.256174	964.497795	-1.1447	-0.00055319	2.3212	0.0011217	1.1765	0.00056856	483.2572663576755	36.827	0.81269	37.597	37.258	38.07	0.7709					29	15	3	0	0	0	0.16676	1	13469	13469		58.679	26.373	1	4169900			14866	1603;847	10798	10878	14513	14513					0.014125968921121057
FLGTYVQLRR	10	Unmodified	_FLGTYVQLRR_					0	0	0		nc|ENSG00000197177|Q86SQ6-1|ADGRA1;nc|ENSG00000197177|Q86SQ6-2|ADGRA1;ENSG00000197177|ENST00000392607|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	MULTI-MSMS	A375_MHC_IP_R1	1	626.6937866210938	2	626.861672	1251.70879	-0.69495	-0.00043563	-0.80628	-0.00050542	-1.5012	-0.00094106	626.8610508492077	65.437	0.91742	65.437	65.105	66.022	0					27	17	2	0	0	0	0.70027	1	23685	23685		19.257	0	1	1626600			14867	14843	10799	10879	14514	14514					0.09300473933967623
FLGTYVQLRR	10	Unmodified	_FLGTYVQLRR_					0	0	0		nc|ENSG00000197177|Q86SQ6-1|ADGRA1;nc|ENSG00000197177|Q86SQ6-2|ADGRA1;ENSG00000197177|ENST00000392607|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	MULTI-MSMS	A375_MHC_IP_R2	2	626.6940307617188	2	626.861672	1251.70879	-0.73843	-0.0004629	-1.0837	-0.00067932	-1.8221	-0.0011422	626.8609547933976	64.412	0.51031	65.152	64.85	65.361	0.74022					14	9	2	0	0	0	0.61662	1	24407	24407		29.082	29.082	1	1257700			14868	14843	10799	10879	14515	14515					0.09300473933967623
FLGTYVQLRR	10	Unmodified	_FLGTYVQLRR_					0	0	0		nc|ENSG00000197177|Q86SQ6-1|ADGRA1;nc|ENSG00000197177|Q86SQ6-2|ADGRA1;ENSG00000197177|ENST00000392607|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	MULTI-MSMS	A375_MHC_IP_R2	2	627.2604370117188	2	626.861672	1251.70879	-0.90219	-0.00056555	-0.61284	-0.00038416	-1.515	-0.00094971	626.8611493896613	81.36	2.0809	82.103	81.467	83.547	0.74297					121	40	5	0	0	0	0.45806	1	30823	30823		29.082	0	1	133000000			14869	14843	10799	10879	14516	14516					0.09300473933967623
FLGYIHNV	8	Unmodified	_FLGYIHNV_					0	0	0			REV__ENSG00000278870|ENST00000623849|OR51G1	REV__ENSG00000278870|ENST00000623849|OR51G1	MSMS	A375_MHC_IP_R1	1	481.6769104003906	2	481.758352	961.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.75	1	55.75	55.25	56.25	0								0	0	0	0.16516	1	19950	19950		42.968	3.0107	1		+		14870	22984	10800	10880	14517	14517					0.01986106105653107
FLHDGLIRV	9	Unmodified	_FLHDGLIRV_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;HECTD4|p.T2131Nfs*17|1|0.26|ENSG00000173064|chr12:112228151-112228152|-/G|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-5|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MSMS	A375_MHC_IP_R1	1	357.6098327636719	3	357.209948	1068.60801	-0.29602	-0.00010574	0.14347	5.1249E-05	-0.15254	-5.4491E-05	357.2098716416075	67.461	0.86371	67.461	67.091	67.955	0					27	16	3	0	0	0	0.65637	1	24424	24424		10.899	0	1	3084200			14871	7762	10801	10881	14518	14518					0.07645441951149223
FLHDNMVEI	9	Oxidation (M)	_FLHDNM(Oxidation (M))VEI_		FLHDNM(1)VEI		FLHDNM(50)VEI	0	0	1		nc|ENSG00000005156|P49916-4|LIG3;nc|ENSG00000005156|P49916-3|LIG3;nc|ENSG00000005156|P49916-2|LIG3;ENSG00000005156|ENST00000378526|LIG3;ENST00000593099.5_1_17:33324760-33324883:+|nuORF	nc|ENSG00000005156|P49916-4|LIG3	nc|ENSG00000005156|P49916-4|LIG3	MULTI-MSMS	A375_MHC_IP_R1	1	567.6680297851562	2	567.268424	1132.5223	-0.39358	-0.00022326	-0.51145	-0.00029013	-0.90503	-0.00051339	567.2680784515885	61.407	0.40892	61.407	61.227	61.636	0					14	7	2	0	0	0	0.10622	1	22163	22163		49.554	21.067	1	2968000			14872	885	10802	10882	14519	14519		5			-0.038665110166903105
FLHDNMVEI	9	Oxidation (M)	_FLHDNM(Oxidation (M))VEI_		FLHDNM(1)VEI		FLHDNM(50)VEI	0	0	1		nc|ENSG00000005156|P49916-4|LIG3;nc|ENSG00000005156|P49916-3|LIG3;nc|ENSG00000005156|P49916-2|LIG3;ENSG00000005156|ENST00000378526|LIG3;ENST00000593099.5_1_17:33324760-33324883:+|nuORF	nc|ENSG00000005156|P49916-4|LIG3	nc|ENSG00000005156|P49916-4|LIG3	MULTI-MSMS	A375_MHC_IP_R2	2	567.667724609375	2	567.268424	1132.5223	-0.66929	-0.00037967	-0.3774	-0.00021409	-1.0467	-0.00059376	567.2679815566987	60.572	0.40638	61.317	61.109	61.515	0.74503					14	7	3	0	0	0	0.10622	1	22953	22953		49.554	11.58	1	2554900			14873	885	10802	10882	14520	14520		5			-0.038665110166903105
FLHEDHIKN	9	Unmodified	_FLHEDHIKN_					0	0	0			REV__ENSG00000151790|ENST00000536354|TDO2	REV__ENSG00000151790|ENST00000536354|TDO2	MSMS	A375_MHC_IP_R2	2	576.7074584960938	2	576.793455	1151.57236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.992	1	64.733	64.233	65.233	0.74022								0	0	0	0.1521	1	24266	24266		18.146	0.011366	1		+		14874	19775	10803	10883	14521	14521					0.002633597034673585
FLHLNRNACY	10	Unmodified	_FLHLNRNACY_					0	0	0		ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2	ENST00000521496.5_1_8:124357024-124408597:-|nuORF	ENST00000521496.5_1_8:124357024-124408597:-|nuORF	MSMS	A375_MHC_IP_R2	2	625.7952880859375	2	625.808582	1249.60261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.94	1	101.7	101.2	102.2	0.76363								0	0	0	0.15283	1	38266	38266		11.64	0.52583	1				14875	6209	10804	10884	14522	14522					-0.012206049029828137
FLHRYKMI	8	Unmodified	_FLHRYKMI_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D;ENST00000585094.1_1_17:30986131-31048108:-|nuORF	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MSMS	A375_MHC_IP_R1	1	554.2296142578125	2	554.310229	1106.60591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.69	1	124.69	124.19	125.19	0								0	0	0	0.16876	1	47054	47054		32.117	10.37	1				14876	8031	10805	10885	14523	14523					0.0568668994167183
FLHRYKMI	8	Unmodified	_FLHRYKMI_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D;ENST00000585094.1_1_17:30986131-31048108:-|nuORF	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MSMS	A375_MHC_IP_R2	2	554.2286376953125	2	554.310229	1106.60591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.34	1	124.67	124.17	125.17	0.32969								0	0	0	0.16876	1	48051	48051		32.117	10.37	1				14877	8031	10805	10885	14524	14524					0.0568668994167183
FLHSTSAEA	9	Unmodified	_FLHSTSAEA_					0	0	0		nc|ENSG00000145016|Q92622-3|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN;ENSG00000145016|ENST00000296343|RUBCN	nc|ENSG00000145016|Q92622-3|RUBCN	nc|ENSG00000145016|Q92622-3|RUBCN	MULTI-SECPEP	A375_MHC_IP_R1	1	482.13226318359375	2	481.732532	961.45051	-0.28954	-0.00013948	0.38911	0.00018745	0.099574	4.7968E-05	481.7326387371662	70.811	0.86997	70.811	70.494	71.364	0					38	16	4	0	0	0	0.62767	1	25673	25673		23.148	0	1	7714700			14878	5533	10806	10886	14525	14525					-0.031756823789010014
FLHVADVRL	9	Unmodified	_FLHVADVRL_					0	0	0			REV__RBM12|p.L335F|1|0.23|ENSG00000244462|chr20:35654318-35654318|C/G|missense_variant	REV__RBM12|p.L335F|1|0.23|ENSG00000244462|chr20:35654318-35654318|C/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	357.60986328125	3	357.209948	1068.60801	-0.33862	-0.00012096	-0.47944	-0.00017126	-0.81806	-0.00029222	357.2097206968055	66.398	0.86824	67.134	66.882	67.75	0.73631					34	16	3	0	0	0	0.52197	1	25176	25176		18.721	0	1	2210700	+		14879	27873	10807	10887	14526	14526					0.07645441951126486
FLHVADVRL	9	Unmodified	_FLHVADVRL_					0	0	0			REV__RBM12|p.L335F|1|0.23|ENSG00000244462|chr20:35654318-35654318|C/G|missense_variant	REV__RBM12|p.L335F|1|0.23|ENSG00000244462|chr20:35654318-35654318|C/G|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	357.209948	1068.60801	-0.33862	-0.00012096	-0.47944	-0.00017126	-0.81806	-0.00029222	357.2097206968055	66.398	0.86824	67.134	66.882	67.75	0.73631	-0.16325	-0.00017251	NaN	18.721	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2210700	+		14880	27873	10807	10887							0.07645441951126486
FLHWVFYW	8	Unmodified	_FLHWVFYW_					0	0	0			REV__ENSG00000224531|ENST00000416247|SMIM13	REV__ENSG00000224531|ENST00000416247|SMIM13	MSMS	A375_MHC_IP_R1	1	599.4522094726562	2	599.297645	1196.58074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.279	1	79.279	78.779	79.779	0								0	0	0	0.16876	1	28938	28938		6.3541	1.0572	1		+		14881	22711	10808	10888	14527	14527					-0.009690415892691817
FLIDDKGYTL	10	Unmodified	_FLIDDKGYTL_					0	0	0		nc|ENSG00000158966|Q5VU97-2|CACHD1;ENSG00000158966|ENST00000651257|CACHD1	nc|ENSG00000158966|Q5VU97-2|CACHD1	nc|ENSG00000158966|Q5VU97-2|CACHD1	MULTI-MSMS	A375_MHC_IP_R2	2	592.8853759765625	2	592.813522	1183.61249	-0.63972	-0.00037923	-0.47154	-0.00027954	-1.1113	-0.00065877	592.8142211552527	96.558	0.6084	97.313	96.861	97.469	0.75586					17	11	2	0	0	0	0.45806	1	36645	36645		30.703	2.5302	1	951990			14882	6341	10809	10889	14528	14528					0.02802861583381855
FLIEGTISRA	10	Unmodified	_FLIEGTISRA_					0	0	0		nc|ENSG00000113838|Q9NVR7-2|TBCCD1;ENSG00000113838|ENST00000338733|TBCCD1	nc|ENSG00000113838|Q9NVR7-2|TBCCD1	nc|ENSG00000113838|Q9NVR7-2|TBCCD1	MULTI-SECPEP	A375_MHC_IP_R1	1	554.2135620117188	2	553.813856	1105.61316	-0.37317	-0.00020666	-0.47338	-0.00026216	-0.84654	-0.00046883	553.8135172816948	71.445	0.4543	71.445	71.211	71.665	0					19	8	3	0	0	0	0.4546	1	25961	25961		43.982	4.0321	1	7532100			14883	3185	10810	10890	14529	14529					0.06457701023100526
FLIFFDDGY	9	Unmodified	_FLIFFDDGY_					0	0	0		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1;nc|ENSG00000143379|Q15047-2|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MSMS	A375_MHC_IP_R2	2	568.7157592773438	2	568.768583	1135.52261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.68	1	107.44	106.94	107.94	0.75977								0	0	0	0.1521	1	40317	40317		18.135	3.2967	1				14884	5379	10811	10891	14530	14530					-0.03972768025187179
FLIFILFLEY	10	Unmodified	_FLIFILFLEY_					0	0	0			REV__ENST00000526878.5_1_11:460175-490579:+|nuORF	REV__ENST00000526878.5_1_11:460175-490579:+|nuORF	MSMS	A375_MHC_IP_R1	1	659.5671997070312	2	659.3783	1316.74205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.41	1	146.41	145.91	146.91	0								0	0	0	0.15629	1	56013	56013		0.40072	0	1		+		14885	21312	10812	10892	14531	14531					0.09634662933331128
FLIFLGKSWG	10	Unmodified	_FLIFLGKSWG_					0	0	0		CON__Q1A7A4	CON__Q1A7A4	CON__Q1A7A4	MULTI-MSMS	A375_MHC_IP_R1	1	389.932861328125	3	389.890215	1166.64882	0.0099605	3.8835E-06	-0.12674	-4.9416E-05	-0.11678	-4.5533E-05	389.89009811215897	37.931	0.35744	37.931	37.71	38.067	0					13	6	3	0	0	0	0.70027	1	12745	12745		12.175	5.073	1	1961700		+	14886	605	10813	10893	14532	14532					0.07215783270748943
FLIGPKLYEA	10	Unmodified	_FLIGPKLYEA_					0	0	0		ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF	ENSG00000163161|ENST00000285398|ERCC3	ENSG00000163161|ENST00000285398|ERCC3	MULTI-SECPEP	A375_MHC_IP_R1	1	576.2289428710938	2	575.828975	1149.6434	-0.1554	-8.9482E-05	0.48227	0.00027771	0.32688	0.00018822	575.8290560797943	93.745	0.50722	93.745	93.484	93.991	0					15	9	2	0	0	0	0.64789	1	34467	34467		32.037	3.543	1	1915300			14887	6634	10814	10894	14533	14533					0.07456059688274763
FLIGTKIGL	9	Unmodified	_FLIGTKIGL_					0	0	0		ENSG00000125848|ENST00000341420|FLRT3	ENSG00000125848|ENST00000341420|FLRT3	ENSG00000125848|ENST00000341420|FLRT3	MULTI-SECPEP	A375_MHC_IP_R1	1	481.7076416015625	2	481.307678	960.600803	-0.32949	-0.00015859	0.12639	6.0831E-05	-0.20311	-9.7757E-05	481.3077327775122	101.07	0.40414	101.07	100.84	101.24	0					14	7	3	0	0	0	0.20645	1	37181	37181		39.95	5.8473	1	1112500			14888	3999	10815	10895	14534	14534					0.1189270935069544
FLIIFYFH	8	Unmodified	_FLIIFYFH_					0	0	0		ENST00000534358.5_2_11:118394338-118394506:+|nuORF	ENST00000534358.5_2_11:118394338-118394506:+|nuORF	ENST00000534358.5_2_11:118394338-118394506:+|nuORF	MSMS	A375_MHC_IP_R2	2	550.2545166015625	2	550.302396	1098.59024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.57	1	119.18	118.68	119.68	0.60909								0	0	0	0.16876	1	45037	45037		11.114	0	1				14889	13211	10816	10896	14535	14535					0.04488726696285994
FLIKFTLTY	9	Unmodified	_FLIKFTLTY_					0	0	0			REV__PLCH2|p.S392F|1|0.27|ENSG00000149527|chr1:2487658-2487658|C/T|missense_variant	REV__PLCH2|p.S392F|1|0.27|ENSG00000149527|chr1:2487658-2487658|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	573.37158203125	2	573.333893	1144.65323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.639	1	87.639	87.139	88.139	0								0	0	0	0.15486	1	32160	32160		8.5933	0.98433	1		+		14890	27798	10817	10897	14536	14536					0.08669247693683246
FLIKKSLLH	9	Unmodified	_FLIKKSLLH_					0	0	0			REV__COG6|p.F414L|1|0.08|ENSG00000133103|chr13:39699576-39699576|C/G|missense_variant	REV__COG6|p.F414L|1|0.08|ENSG00000133103|chr13:39699576-39699576|C/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	551.3203125	2	549.855327	1097.6961	-0.69402	-0.00038161	0.30111	0.00016557	-0.39291	-0.00021604	549.8553436992803	118.53	0.50472	119.14	118.9	119.4	0.60909					20	9	3	0	0	0	0.59266	1	45069	45069		21.747	4.8044	1	23546000	+		14891	15820	10818	10898	14537	14537					0.15116062541756037
FLIKNEVQL	9	Unmodified	_FLIKNEVQL_					0	0	0			REV__SEC14L4|p.E295K|3|0.47|ENSG00000133488|chr22:30491862-30491862|C/T|missense_variant	REV__SEC14L4|p.E295K|3|0.47|ENSG00000133488|chr22:30491862-30491862|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	552.4342041015625	2	552.326599	1102.63865	-0.45759	-0.00025274	1.3354	0.0007376	0.87786	0.00048486	552.32712725338	79.335	0.51302	79.335	79.061	79.574	0					20	9	3	0	0	0	0.6898	1	28987	28987		7.9102	0	1	2056800	+		14892	27930	10819	10899	14538	14538					0.09143175545523263
FLILPMTFY	9	Unmodified	_FLILPMTFY_					0	0	0		ENSG00000157551|ENST00000398938|KCNJ15;KCNJ15|p.S245N|1|0.51|ENSG00000157551|chr21:38299995-38299995|G/A|missense_variant;KCNJ15|p.H256Y|1|0.35|ENSG00000157551|chr21:38300027-38300027|C/T|missense_variant	ENSG00000157551|ENST00000398938|KCNJ15	ENSG00000157551|ENST00000398938|KCNJ15	MULTI-SECPEP	A375_MHC_IP_R2	2	382.2851867675781	3	382.208556	1143.60384	-0.37227	-0.00014229	-0.86222	-0.00032955	-1.2345	-0.00047183	382.54203752873116	19.281	0.60791	19.884	19.683	20.291	0.60308					17	11	2	0	0	0	0.52144	1	5865	5865		21.537	4.4241	1	1327900			14893	6251	10820	10900	14539	14539					0.03778216413206792
FLIPIYHQV	9	Unmodified	_FLIPIYHQV_					0	0	0		nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA	nc|ENSG00000278540|Q13085|ACACA	nc|ENSG00000278540|Q13085|ACACA	MULTI-SECPEP	A375_MHC_IP_R1	1	565.72412109375	2	565.32386	1128.63317	-0.35808	-0.00020243	0.94782	0.00053582	0.58974	0.00033339	565.3239558089239	103.09	0.50958	103.09	102.76	103.27	0					18	9	3	0	0	0	0.28475	1	37858	37858		32.305	14.171	1	1788000			14894	10037	10821	10901	14540	14540					0.07399496753669155
FLIQHLPLV	9	Unmodified	_FLIQHLPLV_					0	0	0		ENST00000430069.5_1_3:176771676-176782752:-|nuORF;ENST00000424913.5_1_3:176771673-176816307:-|nuORF	ENST00000430069.5_1_3:176771676-176782752:-|nuORF	ENST00000430069.5_1_3:176771676-176782752:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	540.7330932617188	2	540.334227	1078.6539	-0.68717	-0.0003713	-0.10283	-5.5562E-05	-0.79	-0.00042686	540.3340407109487	116.54	0.71295	117.2	116.87	117.58	0.65962					23	13	3	0	0	0	0.02114	1	44059	44059		104.8	45.004	1	8449800			14895	11782	10822	10902	14541	14541					0.1177208713336313
FLIQHLPLV	9	Unmodified	_FLIQHLPLV_					0	0	0		ENST00000430069.5_1_3:176771676-176782752:-|nuORF;ENST00000424913.5_1_3:176771673-176816307:-|nuORF	ENST00000430069.5_1_3:176771676-176782752:-|nuORF	ENST00000430069.5_1_3:176771676-176782752:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	540.334227	1078.6539	-0.45541	-0.00024607	-0.039901	-2.156E-05	-0.49531	-0.00026763	540.3340752920202	117.54	0.65904	117.54	117.31	117.97	0	0.17263	2.9834E-05	NaN	104.8	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8373200			14896	11782	10822	10902							0.1177208713336313
FLIQQRLY	8	Unmodified	_FLIQQRLY_					0	0	0			REV__ENSG00000173548|ENST00000308527|SNX33	REV__ENSG00000173548|ENST00000308527|SNX33	MULTI-SECPEP	A375_MHC_IP_R2	2	360.9933166503906	3	360.878198	1079.61277	-0.56945	-0.0002055	0.14036	5.0652E-05	-0.42909	-0.00015485	360.87814130774245	38.349	0.40569	39.124	38.895	39.3	0.77451					11	7	2	0	0	0	0.972	1	14163	14163		3.2813	0	1	2516700	+		14897	21230	10823	10903	14542	14542					0.07614326093903401
FLIRESETL	9	Unmodified	_FLIRESETL_					0	0	0		nc|ENSG00000254087|P07948-2|LYN;ENSG00000254087|ENST00000519728|LYN	nc|ENSG00000254087|P07948-2|LYN	nc|ENSG00000254087|P07948-2|LYN	MULTI-SECPEP	A375_MHC_IP_R1	1	554.7059326171875	2	554.305864	1106.59717	-0.31149	-0.00017266	0.4757	0.00026368	0.16422	9.1027E-05	554.3059100495427	70.155	0.40807	70.155	69.933	70.341	0					14	7	3	0	0	0	0.074405	1	25492	25492		79.596	23.419	1	2582700			14898	9873	10824	10904	14543	14543					0.04813994786195508
FLITEFFITV	10	Unmodified	_FLITEFFITV_					0	0	0			REV__OR5AP2|p.G259E|1|0.35|ENSG00000172464|chr11:56641664-56641664|C/T|missense_variant	REV__OR5AP2|p.G259E|1|0.35|ENSG00000172464|chr11:56641664-56641664|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	410.6058044433594	3	410.565397	1228.67436	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.228	1	46.228	45.728	46.728	0								0	0	0	0.15435	1	16208	16208		3.5871	0	1		+		14899	27687	10825	10905	14544	14544					0.06917213002498102
FLIYKPCIW	9	Unmodified	_FLIYKPCIW_					0	0	0		ENST00000581335.1_1_17:73224204-73224372:+|nuORF	ENST00000581335.1_1_17:73224204-73224372:+|nuORF	ENST00000581335.1_1_17:73224204-73224372:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	592.2218627929688	2	591.822638	1181.63072	-1.0974	-0.00064947	-1.0214	-0.00060448	-2.1188	-0.001254	591.8218916047067	53.495	0.45979	54.246	53.995	54.454	0.75105					12	8	2	0	0	0	0.65748	1	20236	20236		10.824	2.9138	1	2035700			14900	13681	10826	10906	14545	14545					0.04717325024375896
FLKDVSSLERK	11	Unmodified	_FLKDVSSLERK_					0	0	0			REV__TAS2R13|p.L48F|1|0.25|ENSG00000212128|chr12:10909157-10909157|G/A|missense_variant	REV__TAS2R13|p.L48F|1|0.25|ENSG00000212128|chr12:10909157-10909157|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	441.6544189453125	3	441.253993	1320.74015	-0.022263	-9.8237E-06	0.80436	0.00035493	0.78209	0.0003451	441.25430256787445	40.679	0.45502	40.679	40.458	40.913	0					21	8	3	0	0	0	0.73502	1	14039	14039		4.1166	4.1166	1	3127800	+		14901	28079	10827	10907	14546	14546					0.09261002177413502
FLKDVSSLERK	11	Unmodified	_FLKDVSSLERK_					0	0	0			REV__TAS2R13|p.L48F|1|0.25|ENSG00000212128|chr12:10909157-10909157|G/A|missense_variant	REV__TAS2R13|p.L48F|1|0.25|ENSG00000212128|chr12:10909157-10909157|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	441.253993	1320.74015	-0.37832	-0.00016694	1.1302	0.0004987	0.75186	0.00033176	441.2543871433038	39.808	0.45734	40.583	40.371	40.828	0.77451	-0.04802	0.00022805	NaN	4.1166	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2507800	+		14902	28079	10827	10907							0.09261002177413502
FLKEEYKSR	9	Unmodified	_FLKEEYKSR_					0	0	0			REV__ENSG00000204172|ENST00000452145|AGAP9	REV__ENSG00000204172|ENST00000452145|AGAP9	MULTI-SECPEP	A375_MHC_IP_R2	2	600.6817626953125	2	600.324588	1198.63462	-0.65146	-0.00039108	-0.54239	-0.00032561	-1.1938	-0.00071669	600.3242513102466	72.414	0.50697	73.15	72.973	73.48	0.73541					15	9	2	0	0	0	0.74169	1	27563	27563		16.149	9.9433	1	3798000	+		14903	22491	10828	10908	14547	14547					0.043250860517900946
FLKKAELEF	9	Unmodified	_FLKKAELEF_					0	0	0		nc|ENSG00000168675|O15165-7|LDLRAD4;nc|ENSG00000168675|O15165-6|LDLRAD4	nc|ENSG00000168675|O15165-7|LDLRAD4	nc|ENSG00000168675|O15165-7|LDLRAD4	MULTI-SECPEP	A375_MHC_IP_R2	2	375.9496765136719	3	375.549859	1123.62775	0.27234	0.00010228	-0.01431	-5.3741E-06	0.25803	9.6904E-05	375.54969466422006	80.295	0.50604	81.04	80.759	81.265	0.74474					18	9	3	0	0	0	0.79837	1	30535	30535		5.7319	5.7319	1	2245500			14904	14755	10829	10909	14548	14548					0.07087773171224399
FLKKPPGSF	9	Unmodified	_FLKKPPGSF_					0	0	0			REV__ENST00000479665.5_2_3:28365438-28365531:-|nuORF	REV__ENST00000479665.5_2_3:28365438-28365531:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	510.6206970214844	2	510.797478	1019.5804	-0.84196	-0.00043007	2.9435	0.0015036	2.1016	0.0010735	510.79941921122503	67.888	0.25017	67.888	67.704	67.955	0					7	4	2	0	0	0	0.69504	1	24615	24615		18.135	2.3668	1	695280	+		14905	25235	10830	10910	14549	14549					0.07139538690898917
FLKNELDNV	9	Unmodified	_FLKNELDNV_					0	0	0		ENST00000473863.1_1_3:49881439-49893910:-|nuORF;ENST00000489948.5_1_3:49881200-49893910:-|nuORF;ENST00000477546.5_1_3:49881200-49893910:-|nuORF;ENSG00000183763|ENST00000331456|TRAIP	ENST00000473863.1_1_3:49881439-49893910:-|nuORF	ENST00000473863.1_1_3:49881439-49893910:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	546.2337036132812	2	546.290214	1090.56587	-1.1293	-0.00061694	1.2008	0.00065601	0.071512	3.9066E-05	546.2907456836732	56.392	0.35752	57.142	56.948	57.306	0.75015					12	6	3	0	0	0	0.53748	1	21293	21293		13.042	2.9685	1	2368400			14906	8526	10831	10911	14550	14550					0.02421421752092101
FLKRMPRS	8	Unmodified	_FLKRMPRS_					0	0	0			REV__ENST00000435620.6_1_3:197803775-197807401:-|nuORF	REV__ENST00000435620.6_1_3:197803775-197807401:-|nuORF	MSMS	A375_MHC_IP_R1	1	517.7217407226562	2	517.800029	1033.5855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.5	1	103.5	103	104	0								0	0	0	0.16876	1	38016	38016		9.3474	0	1		+		14907	24751	10832	10912	14551	14551					0.07005519281847228
FLKRRWRKRK	10	Unmodified	_FLKRRWRKRK_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MSMS	A375_MHC_IP_R1	1	737.4721069335938	2	737.473121	1472.93169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.44	1	110.44	109.94	110.94	0								0	0	0	0.15628	1	40497	40497		0.45834	0.10771	1				14908	7640	10833	10913	14552	14552					0.21414012509694658
FLKVEPFLP	9	Unmodified	_FLKVEPFLP_					0	0	0		nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;nc|ENSG00000070669|P08243-3|ASNS;ASNS|p.P173S|1|0.64|ENSG00000070669|chr7:97859369-97859369|G/A|missense_variant;ASNS|p.P173L|1|0.3|ENSG00000070669|chr7:97859368-97859368|G/A|missense_variant	nc|ENSG00000070669|P08243-2|ASNS	nc|ENSG00000070669|P08243-2|ASNS	MSMS	A375_MHC_IP_R1	1	545.221923828125	2	545.320786	1088.62702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.645	1	99.645	99.145	100.15	0								0	0	0	0.14169	1	36607	36607		29.082	1.4528	1				14909	1496	10834	10914	14553	14553					0.08624978522175297
FLLAIDYFD	9	Unmodified	_FLLAIDYFD_					0	0	0			REV__tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	REV__tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	559.1827392578125	2	558.784233	1115.55391	-0.78673	-0.00043961	-1.6124	-0.00090096	-2.3991	-0.0013406	558.7829626458462	134.75	0.50928	134.75	134.62	135.13	0					18	9	3	0	0	0	0.1978	1	51970	51970		38.151	7.9264	1	7124900	+		14910	28411	10835	10915	14554	14554					0.0007580500889616815
FLLAIDYFD	9	Unmodified	_FLLAIDYFD_					0	0	0			REV__tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	REV__tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	559.1825561523438	2	558.784233	1115.55391	-0.59627	-0.00033318	-1.8641	-0.0010416	-2.4604	-0.0013748	558.7829701174218	134.54	1.1728	134.68	133.73	134.9	0.13901					14	10	2	0	0	0	0.13491	1	52967	52967		44.407	8.3628	1	5375200	+		14911	28411	10835	10915	14555	14555					0.0007580500889616815
FLLAIDYFD	9	Unmodified	_FLLAIDYFD_					0	0	0			REV__tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	REV__tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	558.784233	1115.55391	-0.59627	-0.00033318	-1.8641	-0.0010416	-2.4604	-0.0013748	558.7829701174218	134.54	1.1728	134.68	133.73	134.9	0.13901	-0.035119	-0.00011358	NaN	44.407	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5375200	+		14912	28411	10835	10915							0.0007580500889616815
FLLALEPEL	9	Unmodified	_FLLALEPEL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	A375_MHC_IP_R1	1	523.7182006835938	2	522.802426	1043.5903	-0.7381	-0.00038588	-0.53193	-0.0002781	-1.27	-0.00066398	522.8022445912638	132.21	1.515	132.21	131.23	132.74	0					42	29	3	0	0	0	0.27971	1	50999	50999		32.117	7.4431	1	6319400			14913	6741	10836	10916	14556	14556					0.07024681905613761
FLLCLCGP	8	Unmodified	_FLLCLCGP_					0	0	0			REV__ENST00000508607.1_1_17:47783523-47785148:-|nuORF	REV__ENST00000508607.1_1_17:47783523-47785148:-|nuORF	MSMS	A375_MHC_IP_R2	2	433.2852478027344	2	433.21916	864.423767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.16	1	105.92	105.42	106.42	0.76308								0	0	0	0.16876	1	39779	39779		2.8892	0	1		+		14914	25582	10837	10917	14557	14557					-0.013867857954323881
FLLDDAVKN	9	Unmodified	_FLLDDAVKN_					0	0	0			REV__ENSG00000163554|ENST00000643759|SPTA1	REV__ENSG00000163554|ENST00000643759|SPTA1	MULTI-SECPEP	A375_MHC_IP_R2	2	517.22607421875	2	517.779482	1033.54441	-0.61904	-0.00032053	3.9866	0.0020642	3.3675	0.0017436	517.7792658523929	68.555	0.50665	69.29	68.968	69.474	0.73512					14	9	2	0	0	0	0.69507	1	25963	25963		13.906	3.0821	1	882680	+		14915	20378	10838	10918	14558	14558					0.028980367233771176
FLLDGFPRTV	10	Unmodified	_FLLDGFPRTV_					0	0	0		ENST00000469238.1_1_1:33480014-33487286:-|nuORF;nc|ENSG00000004455|P54819-4|AK2;ENST00000427762.1_1_1:59096724-59097153:-|nuORF;nc|ENSG00000004455|P54819-6|AK2;nc|ENSG00000004455|P54819-3|AK2;nc|ENSG00000004455|P54819-5|AK2;nc|ENSG00000004455|P54819-2|AK2;ENSG00000004455|ENST00000672715|AK2	ENST00000469238.1_1_1:33480014-33487286:-|nuORF	ENST00000469238.1_1_1:33480014-33487286:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	583.223876953125	2	582.824224	1163.63389	0.17268	0.00010064	-1.8958	-0.0011049	-1.7232	-0.0010043	582.823160687086	112.97	1.0641	112.97	112.53	113.6	0					45	20	3	0	0	0	0.1298	1	41427	41427		57.249	15.409	1	7267300			14916	865	10839	10919	14559	14559					0.058622914027409934
FLLDGFPRTV	10	Unmodified	_FLLDGFPRTV_					0	0	0		ENST00000469238.1_1_1:33480014-33487286:-|nuORF;nc|ENSG00000004455|P54819-4|AK2;ENST00000427762.1_1_1:59096724-59097153:-|nuORF;nc|ENSG00000004455|P54819-6|AK2;nc|ENSG00000004455|P54819-3|AK2;nc|ENSG00000004455|P54819-5|AK2;nc|ENSG00000004455|P54819-2|AK2;ENSG00000004455|ENST00000672715|AK2	ENST00000469238.1_1_1:33480014-33487286:-|nuORF	ENST00000469238.1_1_1:33480014-33487286:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	583.2211303710938	2	582.824224	1163.63389	-0.19658	-0.00011457	-1.4306	-0.0008338	-1.6272	-0.00094838	582.8233563790019	112.18	1.0696	112.91	112.41	113.48	0.72459					46	20	4	0	0	0	0.091534	1	42234	42234		65.474	19.453	1	7923200			14917	865	10839	10919	14560	14560					0.058622914027409934
FLLDKKIGV	9	Unmodified	_FLLDKKIGV_					0	0	0		ENSG00000166226|ENST00000299300|CCT2;nc|ENSG00000166226|P78371-2|CCT2	ENSG00000166226|ENST00000299300|CCT2	ENSG00000166226|ENST00000299300|CCT2	MULTI-SECPEP	A375_MHC_IP_R1	1	516.6797485351562	2	516.826235	1031.63792	-0.63077	-0.000326	0.24135	0.00012473	-0.38942	-0.00020126	516.826336451835	68.489	2.9998	68.489	68.108	71.108	0					170	58	5	0	0	0	0.019499	1	24856	24856		114.2	41.234	1	231170000			14918	7044	10840	10920	14561	14561					0.12336380896454102
FLLDKKIGV	9	Unmodified	_FLLDKKIGV_					0	0	0		ENSG00000166226|ENST00000299300|CCT2;nc|ENSG00000166226|P78371-2|CCT2	ENSG00000166226|ENST00000299300|CCT2	ENSG00000166226|ENST00000299300|CCT2	MULTI-MSMS	A375_MHC_IP_R2	2	516.7015991210938	2	516.826235	1031.63792	-0.71833	-0.00037125	0.034692	1.793E-05	-0.68363	-0.00035332	516.8262318016945	67.551	2.9972	68.287	67.951	70.948	0.73631					174	58	5	0	0	0	0.04093	1	25750	25750		67.838	35.533	1	236600000			14919	7044	10840	10920	14562	14562					0.12336380896454102
FLLDNVTLY	9	Unmodified	_FLLDNVTLY_					0	0	0			REV__ENSG00000166387|ENST00000299492|PPFIBP2	REV__ENSG00000166387|ENST00000299492|PPFIBP2	MULTI-MSMS	A375_MHC_IP_R1	1	548.7078247070312	2	549.297507	1096.58046	-0.51848	-0.0002848	0.31436	0.00017268	-0.20411	-0.00011212	549.2973723013114	98.743	0.40765	98.743	98.507	98.914	0					12	7	2	0	0	0	0.69317	1	36254	36254		11.64	0	1	940000	+		14920	20674	10841	10921	14563	14563					0.03603493900254762
FLLDPVKGERL	11	Unmodified	_FLLDPVKGERL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R1	1	430.3211975097656	3	429.587084	1285.73942	-0.18811	-8.0809E-05	-0.16998	-7.302E-05	-0.35808	-0.00015383	429.58699456108803	77.137	1.4755	77.137	76.776	78.251	0					77	28	5	0	0	0	0.00097291	3	28102	28080;28102;28355		79.86	53.863	1	29598000			14921	14788	10842	10922	14564;14565;14566	14565					0.10798207528387138
FLLDPVKGERL	11	Unmodified	_FLLDPVKGERL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R2	2	429.48883056640625	3	429.587084	1285.73942	-0.20137	-8.6506E-05	-0.34531	-0.00014834	-0.54667	-0.00023484	429.58690438567305	76.177	1.7736	76.918	76.64	78.414	0.74052					81	34	4	0	0	0	0.00097291	3	28882	28882;28901;29132		79.86	48.224	1	41836000			14922	14788	10842	10922	14567;14568;14569	14567					0.10798207528387138
FLLDPVKGERL	11	Unmodified	_FLLDPVKGERL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R2	2	644.2767944335938	2	643.876988	1285.73942	-0.69183	-0.00044546	0.035642	2.2949E-05	-0.65619	-0.00042251	643.8767346353261	76.177	0.66051	76.918	76.64	77.301	0.74052					23	12	3	0	0	0	0.69618	1	28918	28918		42.835	20.177	1	3634100			14923	14788	10842	10922	14570	14570					0.10798207528387138
FLLDREKSL	9	Unmodified	_FLLDREKSL_					0	0	0		ENSG00000125089|ENST00000245105|SH3TC1;ENST00000502350.5_1_4:8234964-8242679:+|nuORF;ENST00000515682.5_1_4:8207046-8242679:+|nuORF	ENSG00000125089|ENST00000245105|SH3TC1;ENST00000515682.5_1_4:8207046-8242679:+|nuORF	ENSG00000125089|ENST00000245105|SH3TC1	MULTI-MSMS	A375_MHC_IP_R2	2	374.61676025390625	3	374.21688	1119.62881	0.015537	5.8141E-06	0.13206	4.9421E-05	0.1476	5.5235E-05	374.21687501601025	59.881	0.96627	60.628	60.4	61.366	0.74714					28	18	3	0	0	0	0.52905	1	22696	22696		18.373	0.93045	1	1597700			14924	3940;12954	10843	10923	14571	14571					0.07377987540144204
FLLDREKSL	9	Unmodified	_FLLDREKSL_					0	0	0		ENSG00000125089|ENST00000245105|SH3TC1;ENST00000502350.5_1_4:8234964-8242679:+|nuORF;ENST00000515682.5_1_4:8207046-8242679:+|nuORF	ENSG00000125089|ENST00000245105|SH3TC1;ENST00000515682.5_1_4:8207046-8242679:+|nuORF	ENSG00000125089|ENST00000245105|SH3TC1	MULTI-MATCH	A375_MHC_IP_R1	1		3	374.21688	1119.62881	0.30519	0.00011421	0.24392	9.1278E-05	0.54911	0.00020548	374.21678623247817	60.743	1.0712	60.743	60.514	61.585	0	0.057579	8.6555E-05	NaN	18.373	28	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1700200			14925	3940;12954	10843	10923							0.07377987540144204
FLLEEKVDR	9	Unmodified	_FLLEEKVDR_					0	0	0			REV__ENST00000493328.5_1_1:35452707-35454621:-|nuORF	REV__ENST00000493328.5_1_1:35452707-35454621:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	384.2857971191406	3	383.548518	1147.62372	-0.052482	-2.0129E-05	1.2459	0.00047786	1.1934	0.00045773	383.54861391038156	29.952	0.79565	29.952	29.657	30.453	0					17	15	2	0	0	0	0.49205	1	9453	9453		26.021	2.2309	1	10645000	+		14926	25422	10844	10924	14572	14572					0.055816836775193224
FLLEKGYEV	9	Unmodified	_FLLEKGYEV_					0	0	0		nc|ENSG00000112699|O60547-2|GMDS;ENSG00000112699|ENST00000380815|GMDS	nc|ENSG00000112699|O60547-2|GMDS	nc|ENSG00000112699|O60547-2|GMDS	MULTI-MSMS	A375_MHC_IP_R1	1	549.6972045898438	2	549.297507	1096.58046	-0.47512	-0.00026098	-0.37037	-0.00020344	-0.84549	-0.00046442	549.2972633095527	77.768	2.3422	77.768	77.436	79.778	0					105	45	4	0	0	0	0.12591	1	28573	28573		57.722	7.789	1	44258000			14927	3104	10845	10925	14573	14573					0.03603493900232024
FLLEKGYEV	9	Unmodified	_FLLEKGYEV_					0	0	0		nc|ENSG00000112699|O60547-2|GMDS;ENSG00000112699|ENST00000380815|GMDS	nc|ENSG00000112699|O60547-2|GMDS	nc|ENSG00000112699|O60547-2|GMDS	MULTI-MSMS	A375_MHC_IP_R2	2	549.697265625	2	549.297507	1096.58046	-0.78481	-0.0004311	-0.050836	-2.7924E-05	-0.83565	-0.00045902	549.2974466252277	76.983	1.8803	77.725	77.354	79.234	0.74294					90	36	4	0	0	0	0.0097279	2	29175	29175;29398		121.53	45.773	1	44475000			14928	3104	10845	10925	14574;14575	14574					0.03603493900232024
FLLEKGYEV	9	Unmodified	_FLLEKGYEV_					0	0	0		nc|ENSG00000112699|O60547-2|GMDS;ENSG00000112699|ENST00000380815|GMDS	nc|ENSG00000112699|O60547-2|GMDS	nc|ENSG00000112699|O60547-2|GMDS	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	549.297507	1096.58046	-0.47512	-0.00026098	-0.37037	-0.00020344	-0.84549	-0.00046442	549.2972633095527	77.768	2.3422	77.768	77.436	79.778	0	0.021169	-0.00016566	NaN	121.53	105	45	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44258000			14929	3104	10845	10925							0.03603493900232024
FLLEKSRVV	9	Unmodified	_FLLEKSRVV_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E;ENST00000598529.5_1_19:8616563-8619410:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENSG00000142347|ENST00000644032|MYO1F;ENST00000595325.5_1_19:8616850-8642307:-|nuORF	ENSG00000157483|ENST00000288235|MYO1E;ENST00000594977.5_1_19:8612968-8642307:-|nuORF	ENSG00000157483|ENST00000288235|MYO1E	MULTI-SECPEP	A375_MHC_IP_R1	1	546.2341918945312	2	545.834591	1089.65463	-0.39799	-0.00021724	-0.0032561	-1.7773E-06	-0.40125	-0.00021902	545.8345423608749	51.896	0.51078	51.896	51.625	52.136	0					19	9	3	0	0	0	0.55534	1	18433	18433		32.037	8.0169	1	3508700			14930	6247;5305	10846	10926	14576	14576					0.11338881782421595
FLLFLIFLRQ	10	Unmodified	_FLLFLIFLRQ_					0	0	0		ENST00000523752.5_1_8:22877945-22878461:-|nuORF	ENST00000523752.5_1_8:22877945-22878461:-|nuORF	ENST00000523752.5_1_8:22877945-22878461:-|nuORF	MSMS	A375_MHC_IP_R2	2	655.4304809570312	2	655.405184	1308.79581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.964	1	97.72	97.22	98.22	0.75586								0	0	0	0.1552	1	36807	36807		3.9444	0.3479	1				14931	13051	10847	10927	14577	14577					0.15376880155690742
FLLGKEVSL	9	Unmodified	_FLLGKEVSL_					0	0	0		nc|ENSG00000197226|Q66K14|TBC1D9B;ENSG00000197226|ENST00000355235|TBC1D9B	nc|ENSG00000197226|Q66K14|TBC1D9B	nc|ENSG00000197226|Q66K14|TBC1D9B	MULTI-SECPEP	A375_MHC_IP_R1	1	503.7023010253906	2	503.302593	1004.59063	-0.33763	-0.00016993	0.81402	0.0004097	0.47639	0.00023977	503.303069246738	91.778	1.6214	91.778	91.503	93.125	0					63	31	4	0	0	0	0.10362	1	33692	33692		63.961	38.561	1	12118000			14932	9133	10848	10928	14578	14578					0.08852101625473097
FLLGKEVSL	9	Unmodified	_FLLGKEVSL_					0	0	0		nc|ENSG00000197226|Q66K14|TBC1D9B;ENSG00000197226|ENST00000355235|TBC1D9B	nc|ENSG00000197226|Q66K14|TBC1D9B	nc|ENSG00000197226|Q66K14|TBC1D9B	MULTI-SECPEP	A375_MHC_IP_R2	2	503.6141357421875	2	503.302593	1004.59063	-0.55317	-0.00027841	0.24027	0.00012093	-0.3129	-0.00015748	503.3027672262563	90.885	1.0122	91.62	91.261	92.273	0.7345					42	19	4	0	0	0	0.03341	1	34576	34576		83.429	22.071	1	8723100			14933	9133	10848	10928	14579	14579					0.08852101625473097
FLLGPRLVLA	10	Unmodified	_FLLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-SECPEP	A375_MHC_IP_R2	2	550.2545166015625	2	549.855327	1097.6961	-0.69402	-0.00038161	0.30111	0.00016557	-0.39291	-0.00021604	549.8553436992803	118.53	0.50472	119.14	118.9	119.4	0.60909					20	9	3	0	0	0	0.77204	1	45037	45037		27.629	23.3	1	23546000			14934	7497	10849	10929	14580	14580					0.15116062541756037
FLLGQKDVL	9	Unmodified	_FLLGQKDVL_					0	0	0			REV__tr|U7ST12|U7ST12_FUSNUMalatedehydrogenase(Oxaloacetate-decarboxylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01238PE=3SV=1	REV__tr|U7ST12|U7ST12_FUSNUMalatedehydrogenase(Oxaloacetate-decarboxylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01238PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1896362304688	2	516.808042	1031.60153	-0.69457	-0.00035896	-1.0974	-0.00056714	-1.792	-0.0009261	516.8078238781617	79.745	0.56055	80.49	80.249	80.81	0.74473					22	10	3	0	0	0	0.46045	1	30307	30307		17.113	0	1	6400400	+		14935	28455	10850	10930	14581	14581					0.08699503999741864
FLLHIQQQV	9	Unmodified	_FLLHIQQQV_					0	0	0		ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	MULTI-SECPEP	A375_MHC_IP_R1	1	563.72412109375	2	563.324391	1124.63423	-0.33121	-0.00018658	3.8608	0.0021749	3.5296	0.0019883	564.3319547557575	79.311	0.66473	79.311	78.96	79.625	0					26	12	3	0	0	0	0.10103	1	28988	28988		93.883	29.647	1	2559200			14936	3168	10851	10931	14582	14582					0.0768971112258896
FLLHVLSRV	9	Unmodified	_FLLHVLSRV_					0	0	0			REV__OTX2|p.S158Hfs*30|1|0.24|ENSG00000165588|chr14:56802133-56802134|-/GATG|frameshift_variant	REV__OTX2|p.S158Hfs*30|1|0.24|ENSG00000165588|chr14:56802133-56802134|-/GATG|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	542.1375732421875	2	542.337301	1082.66005	-0.74508	-0.00040408	0.83794	0.00045445	0.092859	5.0361E-05	542.839676813597	79.602	0.20412	80.347	80.249	80.453	0.74474					6	3	2	0	0	0	0.76187	1	30173	30173		7.2892	4.9865	1	625730	+		14937	27707	10852	10932	14583	14583					0.12202605364905139
FLLKIFCVF	9	Unmodified	_FLLKIFCVF_					0	0	0		DOCK3|p.P1852Qfs*45|1|0.39|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant;ENSG00000088538|ENST00000266037|DOCK3	DOCK3|p.P1852Qfs*45|1|0.39|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	DOCK3|p.P1852Qfs*45|1|0.39|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	565.7274780273438	2	565.327556	1128.64056	-0.20215	-0.00011428	0.012994	7.3457E-06	-0.18915	-0.00010693	565.3274406293211	53.95	0.55657	53.95	53.707	54.263	0					24	10	3	0	0	0	0.77003	1	19232	19232		7.2892	0	1	5489100			14938	784	10853	10933	14584	14584					0.0813851302978037
FLLKIFCVF	9	Unmodified	_FLLKIFCVF_					0	0	0		DOCK3|p.P1852Qfs*45|1|0.39|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant;ENSG00000088538|ENST00000266037|DOCK3	DOCK3|p.P1852Qfs*45|1|0.39|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	DOCK3|p.P1852Qfs*45|1|0.39|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	565.327556	1128.64056	-1.0012	-0.00056602	0.070649	3.994E-05	-0.93058	-0.00052608	565.8289928752888	53.013	0.61003	53.764	53.436	54.046	0.75105	-0.092849	3.9523E-05	NaN	11.64	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5314800			14939	784	10853	10933							0.0813851302978037
FLLKLKKLLKF	11	Unmodified	_FLLKLKKLLKF_					0	0	0			REV__tr|U7SQX1|U7SQX1_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01612PE=4SV=1	REV__tr|U7SQX1|U7SQX1_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01612PE=4SV=1	MSMS	A375_MHC_IP_R1	1	696.3294677734375	2	695.981059	1389.94756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.6	1	104.6	104.1	105.1	0								0	0	0	0.1636	1	38408	38408		0	0	1		+		14940	28388	10854	10934	14585	14585					0.26818861183392073
FLLLKKRKKV	10	Unmodified	_FLLLKKRKKV_					0	0	0			REV__ENST00000438248.1_1_10:89603626-89603959:+|nuORF	REV__ENST00000438248.1_1_10:89603626-89603959:+|nuORF	MSMS	A375_MHC_IP_R2	2	637.1957397460938	2	636.94755	1271.88055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.3	1	122.68	122.18	123.18	0.3766								0	0	0	0.15628	1	46856	46856		0.45834	0.15131	1		+		14941	24780	10855	10935	14586	14586					0.25548250692281727
FLLLNFYV	8	Unmodified	_FLLLNFYV_					0	0	0		BTN3A2|p.H15Y|1|0.37|ENSG00000186470|chr6:26368225-26368225|C/T|missense_variant	BTN3A2|p.H15Y|1|0.37|ENSG00000186470|chr6:26368225-26368225|C/T|missense_variant	BTN3A2|p.H15Y|1|0.37|ENSG00000186470|chr6:26368225-26368225|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	514.7108764648438	2	514.794404	1027.57425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.389	1	81.389	80.889	81.889	0								0	0	0	0.16876	1	29741	29741		34.187	5.7005	1				14942	259	10856	10936	14587	14587					0.061570204593635935
FLLPAGWIL	9	Unmodified	_FLLPAGWIL_					0	0	0		ENSG00000176340|ENST00000314133|COX8A	ENSG00000176340|ENST00000314133|COX8A	ENSG00000176340|ENST00000314133|COX8A	MULTI-SECPEP	A375_MHC_IP_R1	1	515.7095947265625	2	515.310221	1028.60589	-0.84805	-0.00043701	-2.6999	-0.0013913	-3.548	-0.0018283	515.3090074181051	137.92	1.1717	137.92	137.69	138.86	0					35	22	3	0	0	0	0.27873	1	53077	53077		45.75	13.633	1	2694100			14943	8014	10857	10937	14588	14588					0.0927301321332834
FLLPAGWIL	9	Unmodified	_FLLPAGWIL_					0	0	0		ENSG00000176340|ENST00000314133|COX8A	ENSG00000176340|ENST00000314133|COX8A	ENSG00000176340|ENST00000314133|COX8A	MULTI-MSMS	A375_MHC_IP_R2	2	515.7098388671875	2	515.310221	1028.60589	-0.57339	-0.00029548	-2.0256	-0.0010438	-2.599	-0.0013393	515.3086363663373	137.8	0.65755	137.89	137.66	138.32	0.083969					20	12	3	0	0	0	0.071148	1	54087	54087		56.048	19.582	1	2373200			14944	8014	10857	10937	14589	14589					0.0927301321332834
FLLPGHTRL	9	Unmodified	_FLLPGHTRL_					0	0	0		ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	MULTI-MSMS	A375_MHC_IP_R1	1	352.27825927734375	3	351.87831	1052.6131	-0.091178	-3.2084E-05	-0.053345	-1.8771E-05	-0.14452	-5.0854E-05	351.8783131778375	59.859	0.50865	59.859	59.651	60.159	0					14	9	2	0	0	0	0.56584	1	21581	21581		16.566	8.4104	1	1652000			14945	8004	10858	10938	14590	14590					0.08889745813735317
FLLPGHTRL	9	Unmodified	_FLLPGHTRL_					0	0	0		ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	MULTI-MSMS	A375_MHC_IP_R2	2	352.2779846191406	3	351.87831	1052.6131	-0.58897	-0.00020724	0.089486	3.1488E-05	-0.49948	-0.00017576	351.8782208263948	58.767	0.35514	59.514	59.336	59.691	0.74714					15	6	3	0	0	0	0.39657	1	22260	22260		24.882	14.058	1	1715100			14946	8004	10858	10938	14591	14591					0.08889745813735317
FLLPGTHTL	9	Unmodified	_FLLPGTHTL_					0	0	0		nc|ENSG00000148357|Q8NDA2-4|HMCN2;nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-SECPEP	A375_MHC_IP_R1	1	500.1702880859375	2	499.78711	997.559667	-0.58842	-0.00029409	0.12239	6.1168E-05	-0.46604	-0.00023292	499.7869824262482	86.198	0.55627	86.198	85.87	86.426	0					16	10	2	0	0	0	0.58271	1	31603	31603		20.454	0	1	1668900			14947	14668	10859	10939	14592	14592					0.06078948311221666
FLLPHPGLKV	10	Unmodified	_FLLPHPGLKV_					0	0	0		nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-3|ATL2;nc|ENSG00000198513|Q8WXF7-2|ATL1;ENSG00000198513|ENST00000358385|ATL1;nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2	nc|ENSG00000119787|Q8NHH9-4|ATL2	nc|ENSG00000119787|Q8NHH9-4|ATL2	MULTI-MSMS	A375_MHC_IP_R1	1	374.63427734375	3	374.234093	1119.68045	0.42371	0.00015857	-0.22653	-8.4776E-05	0.19718	7.379E-05	374.2339580370472	78.042	0.71225	78.042	77.742	78.454	0					32	13	4	0	0	0	0.45806	1	28452	28452		30.703	6.9137	1	9743200			14948	14566	10860	10940	14593	14593					0.1253977602470968
FLLPHPGLKV	10	Unmodified	_FLLPHPGLKV_					0	0	0		nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-3|ATL2;nc|ENSG00000198513|Q8WXF7-2|ATL1;ENSG00000198513|ENST00000358385|ATL1;nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2	nc|ENSG00000119787|Q8NHH9-4|ATL2	nc|ENSG00000119787|Q8NHH9-4|ATL2	MULTI-MSMS	A375_MHC_IP_R2	2	374.63446044921875	3	374.234093	1119.68045	0.34744	0.00013002	-0.43636	-0.0001633	-0.08892	-3.3277E-05	374.23388158457226	76.989	0.5566	77.732	77.453	78.01	0.74293					31	10	4	0	0	0	0.35113	1	29206	29206		37.075	7.2341	1	8773500			14949	14566	10860	10940	14594	14594					0.1253977602470968
FLLPILSQI	9	Unmodified	_FLLPILSQI_					0	0	0		DDX3X|p.V657Gfs*2|1|0.51|ENSG00000215301|chrX:41347694-41347695|-/G|frameshift_variant;ENSG00000215301|ENST00000644876|DDX3X;DDX3X|p.P297Rfs*22|1|0.21|ENSG00000215301|chrX:41344264-41344270|CTTGCGT/-|frameshift_variant;nc|ENSG00000215301|O00571-2|DDX3X;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENST00000463199.1_1_Y:15025644-15026909:+|nuORF;nc|ENSG00000067048|O15523-3|DDX3Y;ENST00000472510.5_1_Y:15024878-15026576:+|nuORF	DDX3X|p.V657Gfs*2|1|0.51|ENSG00000215301|chrX:41347694-41347695|-/G|frameshift_variant	DDX3X|p.V657Gfs*2|1|0.51|ENSG00000215301|chrX:41347694-41347695|-/G|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	522.7281494140625	2	522.328611	1042.64267	-0.80129	-0.00041853	0.23685	0.00012371	-0.56443	-0.00029482	522.328669495714	136.69	0.7175	136.69	136.51	137.23	0					29	13	4	0	0	0	0.0019764	1	52644	52644		144.35	23.9	1	27689000			14950	727	10861	10941	14595	14595					0.12305265039231017
FLLPILSQI	9	Unmodified	_FLLPILSQI_					0	0	0		DDX3X|p.V657Gfs*2|1|0.51|ENSG00000215301|chrX:41347694-41347695|-/G|frameshift_variant;ENSG00000215301|ENST00000644876|DDX3X;DDX3X|p.P297Rfs*22|1|0.21|ENSG00000215301|chrX:41344264-41344270|CTTGCGT/-|frameshift_variant;nc|ENSG00000215301|O00571-2|DDX3X;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENST00000463199.1_1_Y:15025644-15026909:+|nuORF;nc|ENSG00000067048|O15523-3|DDX3Y;ENST00000472510.5_1_Y:15024878-15026576:+|nuORF	DDX3X|p.V657Gfs*2|1|0.51|ENSG00000215301|chrX:41347694-41347695|-/G|frameshift_variant	DDX3X|p.V657Gfs*2|1|0.51|ENSG00000215301|chrX:41347694-41347695|-/G|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	522.7282104492188	2	522.328611	1042.64267	-0.41317	-0.00021581	0.0093321	4.8744E-06	-0.40384	-0.00021094	522.3285441788557	136.57	0.82649	136.68	136.55	137.38	0.11134					31	15	5	0	0	0	0.0019764	1	53642	53642		144.35	23.9	1	21102000			14951	727	10861	10941	14596	14596					0.12305265039231017
FLLPKFHGV	9	Unmodified	_FLLPKFHGV_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	A375_MHC_IP_R1	1	353.61126708984375	3	353.211289	1056.61204	0.014725	5.201E-06	0.13626	4.8127E-05	0.15098	5.3328E-05	353.21128797259826	79.342	0.51302	79.342	79.061	79.574	0					19	9	3	0	0	0	0.46465	1	28949	28949		21.537	12.154	1	2060500			14952	9866	10862	10942	14597	14597					0.08599531444838249
FLLPKFHGV	9	Unmodified	_FLLPKFHGV_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	A375_MHC_IP_R2	2	353.6109619140625	3	353.211289	1056.61204	-0.19355	-6.8365E-05	-0.41585	-0.00014688	-0.6094	-0.00021525	353.21111478306085	78.248	0.55885	78.991	78.776	79.335	0.74293					15	10	2	0	0	0	0.46465	1	29745	29745		21.537	12.154	1	1877500			14953	9866	10862	10942	14598	14598					0.08599531444838249
FLLPLRIAL	9	Unmodified	_FLLPLRIAL_					0	0	0		ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	MULTI-MSMS	A375_MHC_IP_R1	1	528.7528686523438	2	528.35242	1054.69029	-0.65228	-0.00034463	0.44651	0.00023592	-0.20576	-0.00010872	528.8539522159615	129.25	0.25427	129.25	129.14	129.4	0					6	4	2	0	0	0	0.14858	1	49715	49715		54.774	12.679	1	4439100			14954	6321	10863	10943	14599	14599					0.16512964030061994
FLLPLRIAL	9	Unmodified	_FLLPLRIAL_					0	0	0		ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	MULTI-MATCH	A375_MHC_IP_R2	2		2	528.35242	1054.69029	-0.57216	-0.0003023	-0.64996	-0.00034341	-1.2221	-0.00064571	528.3519181617881	129	0.15204	129.24	129.11	129.26	0.23946	-0.0054316	-0.00060773	NaN	54.774	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3607200			14955	6321	10863	10943							0.16512964030061994
FLLPTLRKV	9	Unmodified	_FLLPTLRKV_					0	0	0		ENSG00000161036|ENST00000292616|LRWD1;ENST00000473880.5_1_7:102106264-102108393:+|nuORF	ENSG00000161036|ENST00000292616|LRWD1	ENSG00000161036|ENST00000292616|LRWD1	MULTI-SECPEP	A375_MHC_IP_R1	1	363.3057861328125	3	362.905977	1085.6961	0.156	5.6613E-05	-0.15904	-5.7718E-05	-0.0030463	-1.1055E-06	362.90585586531324	75.887	0.80597	75.887	75.564	76.37	0					39	15	4	0	0	0	0.27114	1	27590	27590		45.74	15.899	1	12583000			14956	6461	10864	10944	14600	14600					0.1566806254174935
FLLPTLRKV	9	Unmodified	_FLLPTLRKV_					0	0	0		ENSG00000161036|ENST00000292616|LRWD1;ENST00000473880.5_1_7:102106264-102108393:+|nuORF	ENSG00000161036|ENST00000292616|LRWD1	ENSG00000161036|ENST00000292616|LRWD1	MULTI-SECPEP	A375_MHC_IP_R2	2	363.3057861328125	3	362.905977	1085.6961	-0.16785	-6.0913E-05	-0.12823	-4.6536E-05	-0.29608	-0.00010745	362.90587346529395	74.801	0.86055	75.539	75.163	76.023	0.73751					40	16	3	0	0	0	0.27114	1	28345	28345		45.74	26.378	1	10730000			14957	6461	10864	10944	14601	14601					0.1566806254174935
FLLRILHVFL	10	Unmodified	_FLLRILHVFL_					0	0	0			REV__ENST00000424843.6_1_8:105503748-105507324:-|nuORF	REV__ENST00000424843.6_1_8:105503748-105507324:-|nuORF	MSMS	A375_MHC_IP_R2	2	635.93017578125	2	635.905351	1269.79615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.74	1	84.48	83.98	84.98	0.73962								0	0	0	0.15417	1	31830	31830		7.2892	2.96	1		+		14958	24632	10865	10945	14602	14602					0.17204299875561446
FLLSEPVAL	9	Unmodified	_FLLSEPVAL_					0	0	0		nc|ENSG00000205336|Q9Y653-4|ADGRG1;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;nc|ENSG00000205336|Q9Y653-5|ADGRG1;ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF	nc|ENSG00000205336|Q9Y653-4|ADGRG1	nc|ENSG00000205336|Q9Y653-4|ADGRG1	MULTI-MSMS	A375_MHC_IP_R1	1	988.43701171875	1	988.57136	987.564084	0.37726	0.00037295	0.98374	0.0009725	1.361	0.0013454	988.5723434866101	128.07	0.55623	128.07	127.87	128.43	0					22	10	3	0	0	0	0.0068722	1	49172	49172		188.08	70.479	1	38829000			14959	9509	10866	10946	14603	14603					0.06980412734139918
FLLSEPVAL	9	Unmodified	_FLLSEPVAL_					0	0	0		nc|ENSG00000205336|Q9Y653-4|ADGRG1;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;nc|ENSG00000205336|Q9Y653-5|ADGRG1;ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF	nc|ENSG00000205336|Q9Y653-4|ADGRG1	nc|ENSG00000205336|Q9Y653-4|ADGRG1	MULTI-MSMS	A375_MHC_IP_R1	1	495.189697265625	2	494.789318	987.564084	-0.17586	-8.7013E-05	0.6904	0.0003416	0.51454	0.00025459	494.7895098552906	128.08	0.50663	128.08	127.92	128.43	0					15	9	3	0	0	0	0.008207	1	49178	49178		129.2	47.336	1	13793000			14960	9509	10866	10946	14604	14604					0.06980412734139918
FLLSEPVAL	9	Unmodified	_FLLSEPVAL_					0	0	0		nc|ENSG00000205336|Q9Y653-4|ADGRG1;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;nc|ENSG00000205336|Q9Y653-5|ADGRG1;ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF	nc|ENSG00000205336|Q9Y653-4|ADGRG1	nc|ENSG00000205336|Q9Y653-4|ADGRG1	MULTI-MSMS	A375_MHC_IP_R2	2	495.18865966796875	2	494.789318	987.564084	-0.52746	-0.00026098	0.068376	3.3832E-05	-0.45908	-0.00022715	494.78930921635674	127.73	0.45578	127.99	127.87	128.32	0.26593					16	8	2	0	0	0	0.008207	1	50158	50158		129.2	39.774	1	16444000			14961	9509	10866	10946	14605	14605					0.06980412734139918
FLLSEPVAL	9	Unmodified	_FLLSEPVAL_					0	0	0		nc|ENSG00000205336|Q9Y653-4|ADGRG1;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;nc|ENSG00000205336|Q9Y653-5|ADGRG1;ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF	nc|ENSG00000205336|Q9Y653-4|ADGRG1	nc|ENSG00000205336|Q9Y653-4|ADGRG1	MULTI-MSMS	A375_MHC_IP_R2	2	988.9760131835938	1	988.57136	987.564084	-0.046827	-4.6292E-05	0.54353	0.00053732	0.49671	0.00049103	988.5721639916943	127.73	0.9162	127.99	127.87	128.78	0.26593					27	17	3	0	0	0	0.43185	1	50375	50375		23.148	5.0134	1	43591000			14962	9509	10866	10946	14606	14606					0.06980412734139918
FLLSKISLR	9	Unmodified	_FLLSKISLR_					0	0	0		FAM47A|p.P79S|1|1.0|ENSG00000185448|chrX:34132044-34132044|G/A|missense_variant	FAM47A|p.P79S|1|1.0|ENSG00000185448|chrX:34132044-34132044|G/A|missense_variant	FAM47A|p.P79S|1|1.0|ENSG00000185448|chrX:34132044-34132044|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	359.9618835449219	3	359.565732	1075.67537	-0.092126	-3.3125E-05	-0.054425	-1.9569E-05	-0.14655	-5.2695E-05	359.5656873751156	68.577	0.55569	69.313	69.07	69.626	0.73511					24	10	3	0	0	0	0.22013	1	25923	25923		34.222	10.421	1	3709700			14963	13973	10867	10947	14607	14607					0.14055472162090155
FLLTFRKR	8	Unmodified	_FLLTFRKR_					0	0	0			REV__ENST00000376552.6_1_9:82186844-82187042:+|nuORF	REV__ENST00000376552.6_1_9:82186844-82187042:+|nuORF	MSMS	A375_MHC_IP_R1	1	360.9575500488281	3	360.894071	1079.66038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.384	1	44.384	43.884	44.884	0								0	0	0	0.16876	1	15483	15483		5.7319	1.4026	1		+		14964	24146	10868	10948	14608	14608					0.12374025084727691
FLLVKDQSKY	10	Unmodified	_FLLVKDQSKY_					0	0	0		ENSG00000198934|ENST00000361470|MAGEE1	ENSG00000198934|ENST00000361470|MAGEE1	ENSG00000198934|ENST00000361470|MAGEE1	MULTI-MSMS	A375_MHC_IP_R2	2	414.6009826660156	3	414.236051	1239.68632	-0.079557	-3.2955E-05	2.6852	0.0011123	2.6056	0.0010794	414.23767278338534	27.976	0.20372	28.654	28.553	28.757	0.67857					5	3	2	0	0	0	0.70012	1	9628	9628		7.4771	3.89	1	467400			14965	9377	10869	10949	14609	14609					0.07606829745714094
FLLVKIFRKQ	10	Unmodified	_FLLVKIFRKQ_					0	0	0		ENST00000568903.5_1_16:24803023-24807335:+|nuORF	ENST00000568903.5_1_16:24803023-24807335:+|nuORF	ENST00000568903.5_1_16:24803023-24807335:+|nuORF	MSMS	A375_MHC_IP_R1	1	431.287841796875	3	431.279814	1290.81761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.06	1	149.06	148.56	149.56	0								0	0	0	0.15637	1	56907	56907		0.15932	0	1				14966	13584	10870	10950	14610	14610					0.1838368490425637
FLLYFEKD	8	Unmodified	_FLLYFEKD_					0	0	0			REV__ENSG00000181333|ENST00000315765|HEPHL1	REV__ENSG00000181333|ENST00000315765|HEPHL1	MSMS	A375_MHC_IP_R2	2	537.720947265625	2	537.778951	1073.54335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.95	1	102.72	102.22	103.22	0.76428								0	0	0	0.16876	1	38641	38641		15.768	1.1865	1		+		14967	21645	10871	10951	14611	14611					0.009518223544773718
FLLYYLDT	8	Unmodified	_FLLYYLDT_					0	0	0		ENST00000304414.11_1_16:18804481-18804547:-|nuORF	ENST00000304414.11_1_16:18804481-18804547:-|nuORF	ENST00000304414.11_1_16:18804481-18804547:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	523.673095703125	2	524.273501	1046.53245	-0.45248	-0.00023722	1.4528	0.00076166	1.0003	0.00052444	524.2743284512661	93.596	1.3208	93.596	93.228	94.548	0					38	25	2	0	0	0	0.85124	1	34374	34374		34.187	6.0141	1	1707400			14968	10562	10872	10952	14612	14612					0.01104419980174498
FLMCETSAFY	10	Unmodified	_FLMCETSAFY_					0	0	0		TM9SF4|p.S16F|1|0.4|ENSG00000101337|chr20:32133044-32133044|C/T|missense_variant	TM9SF4|p.S16F|1|0.4|ENSG00000101337|chr20:32133044-32133044|C/T|missense_variant	TM9SF4|p.S16F|1|0.4|ENSG00000101337|chr20:32133044-32133044|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	606.24462890625	2	606.25921	1210.50387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.986	1	77.986	77.486	78.486	0								0	0	0	0.15047	1	28464	28464		16.942	5.302	1				14969	29351	10873	10953	14613	14613					-0.09296388982920689
FLMCETSAFY	10	Unmodified	_FLMCETSAFY_					0	0	0		TM9SF4|p.S16F|1|0.4|ENSG00000101337|chr20:32133044-32133044|C/T|missense_variant	TM9SF4|p.S16F|1|0.4|ENSG00000101337|chr20:32133044-32133044|C/T|missense_variant	TM9SF4|p.S16F|1|0.4|ENSG00000101337|chr20:32133044-32133044|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	606.172607421875	2	606.25921	1210.50387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.107	1	78.107	77.607	78.607	0								0	0	0	0.15047	1	28509	28509		16.942	3.4344	1				14970	29351	10873	10953	14614	14614					-0.09296388982920689
FLMCETSAFY	10	Unmodified	_FLMCETSAFY_					0	0	0		TM9SF4|p.S16F|1|0.4|ENSG00000101337|chr20:32133044-32133044|C/T|missense_variant	TM9SF4|p.S16F|1|0.4|ENSG00000101337|chr20:32133044-32133044|C/T|missense_variant	TM9SF4|p.S16F|1|0.4|ENSG00000101337|chr20:32133044-32133044|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	605.6737060546875	2	606.25921	1210.50387	-0.41944	-0.00025429	-1.3587	-0.00082375	-1.7782	-0.001078	606.2581894473287	77.448	0.61029	78.191	77.857	78.468	0.74293					18	11	2	0	0	0	0.89109	1	29337	29337		16.942	9.0321	1	1557100			14971	29351	10873	10953	14615	14615					-0.09296388982920689
FLMDFIHQV	9	Oxidation (M)	_FLM(Oxidation (M))DFIHQV_		FLM(1)DFIHQV		FLM(46)DFIHQV	0	0	1		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	MULTI-MSMS	A375_MHC_IP_R1	1	583.6250610351562	2	583.289159	1164.56377	-0.20017	-0.00011676	0.11662	6.8024E-05	-0.08355	-4.8734E-05	583.2889248973087	103.19	1.5782	103.19	102.91	104.49	0					40	30	2	0	0	0	0.12771	1	37896	37896		45.7	17.526	1	1263000			14972	1475	10874	10954	14616	14616		44			-0.0119333025738797
FLMDFIHQV	9	Oxidation (M)	_FLM(Oxidation (M))DFIHQV_		FLM(1)DFIHQV		FLM(93)DFIHQV	0	0	1		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	MULTI-SECPEP	A375_MHC_IP_R2	2	583.689208984375	2	583.289159	1164.56377	-0.40186	-0.0002344	0.2899	0.00016909	-0.11196	-6.5308E-05	583.2891859245907	96.227	0.81328	96.977	96.449	97.262	0.75044					28	15	3	0	0	0	0.046478	1	36508	36508		92.653	52.704	1	3864900			14973	1475	10874	10954	14617	14617		44			-0.0119333025738797
FLMDFIHQV	9	Oxidation (M)	_FLM(Oxidation (M))DFIHQV_		FLM(1)DFIHQV		FLM(72)DFIHQV	0	0	1		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	MULTI-SECPEP	A375_MHC_IP_R2	2	584.02490234375	2	583.289159	1164.56377	-0.38238	-0.00022304	0.37511	0.0002188	-0.0072721	-4.2417E-06	583.2891787751071	102.07	1.6235	102.83	101.96	103.58	0.76428					51	31	2	0	0	0	0.10103	1	38784	38784		71.922	28.064	1	1514300			14974	1475	10874	10954	14618	14618		44			-0.0119333025738797
FLMEITIFE	9	Unmodified	_FLMEITIFE_					0	0	0			REV__ENST00000528023.3_1_15:41455975-41456569:+|nuORF	REV__ENST00000528023.3_1_15:41455975-41456569:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	381.62518310546875	3	381.531588	1141.57293	0.022995	8.7735E-06	0.45649	0.00017416	0.47948	0.00018294	381.8659393088652	27.474	0.25485	28.152	27.996	28.251	0.67857					7	4	2	0	0	0	0.75466	1	9385	9385		8.1555	4.8359	1	1670900	+		14975	22087	10875	10955	14619	14619					0.007810183082938238
FLMLLVRLRDI	11	Unmodified	_FLMLLVRLRDI_					0	0	0			REV__nc|ENSG00000125869|Q9UJQ1-2|LAMP5	REV__nc|ENSG00000125869|Q9UJQ1-2|LAMP5	MSMS	A375_MHC_IP_R1	1	695.0577392578125	2	694.925958	1387.83736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.39	1	109.39	108.89	109.89	0								0	0	0	0.16258	1	40124	40124		5.2969	0.76802	1		+		14976	18371	10876	10956	14620	14620					0.15895692852723187
FLNEYFGKL	9	Unmodified	_FLNEYFGKL_					0	0	0		ENST00000587410.1_1_18:77132833-77134205:+|nuORF	ENST00000587410.1_1_18:77132833-77134205:+|nuORF	ENST00000587410.1_1_18:77132833-77134205:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	378.2818603515625	3	377.534209	1129.5808	-0.018997	-7.1719E-06	-0.68698	-0.00025936	-0.70598	-0.00026653	377.53401369566336	37.728	0.66806	38.502	38.175	38.843	0.77451					20	11	3	0	0	0	0.75519	1	13845	13845		14.405	14.405	1	6058800			14977	13746	10877	10957	14621	14621					0.021189136200973735
FLNGCKACVEY	11	Unmodified	_FLNGCKACVEY_					0	0	0			REV__ENSG00000101493|ENST00000443185|ZNF516	REV__ENSG00000101493|ENST00000443185|ZNF516	MULTI-SECPEP	A375_MHC_IP_R1	1	624.182373046875	2	623.783384	1245.55222	-0.21065	-0.0001314	-0.78318	-0.00048853	-0.99383	-0.00061993	623.7828151488086	44.4	0.51311	44.4	44.113	44.626	0					18	9	3	0	0	0	0.88813	1	15499	15499		24.991	3.2443	1	3848400	+		14978	17174	10878	10958	14622	14622					-0.06073895343001823
FLNGKSVGV	9	Unmodified	_FLNGKSVGV_					0	0	0		nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123170580-123298708:-|nuORF	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	461.1634216308594	2	460.763635	919.512717	-0.17119	-7.888E-05	0.041272	1.9017E-05	-0.12992	-5.9863E-05	460.76363254786037	47.442	0.80933	47.442	47.211	48.02	0					26	15	2	0	0	0	0.036758	1	16704	16704		79.596	26.021	1	6234700			14979	4830	10879	10959	14623	14623					0.04974088760104678
FLNGKSVGV	9	Unmodified	_FLNGKSVGV_					0	0	0		nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123170580-123298708:-|nuORF	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	MULTI-SECPEP	A375_MHC_IP_R2	2	461.16351318359375	2	460.763635	919.512717	-0.29023	-0.00013373	0.088726	4.0882E-05	-0.20151	-9.2848E-05	460.76353889671566	46.603	0.61015	47.368	47.058	47.668	0.76519					31	11	4	0	0	0	0.042716	1	17435	17435		76.825	9.4809	1	6325300			14980	4830	10879	10959	14624	14624					0.04974088760104678
FLNIKKIMLLR	11	Unmodified	_FLNIKKIMLLR_					0	0	0		ENST00000596528.1_1_19:23541540-23541639:-|nuORF	ENST00000596528.1_1_19:23541540-23541639:-|nuORF	ENST00000596528.1_1_19:23541540-23541639:-|nuORF	MSMS	A375_MHC_IP_R2	2	694.8416137695312	2	694.94415	1387.87375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.31	1	143.33	142.83	143.83	0.024414								0	0	0	0.16354	1	56010	56010		0.30703	0	1				14981	13840	10880	10960	14625	14625					0.19532569749435424
FLNIKLLLF	9	Unmodified	_FLNIKLLLF_					0	0	0			REV__ENSG00000175877|ENST00000320531|TMEM270	REV__ENSG00000175877|ENST00000320531|TMEM270	MSMS	A375_MHC_IP_R1	1	374.2734069824219	3	374.242477	1119.7056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.178	1	39.178	38.678	39.678	0								0	0	0	0.15486	1	13363	13363		4.897	0.95262	1		+		14982	21370	10881	10961	14626	14626					0.15053830827264392
FLNKIAQQV	9	Unmodified	_FLNKIAQQV_					0	0	0			REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-SECPEP	A375_MHC_IP_R1	1	531.2107543945312	2	530.811116	1059.60768	-0.37011	-0.00019646	-0.62652	-0.00033256	-0.99663	-0.00052902	530.81074433951	92.388	0.96566	92.388	92.211	93.176	0					24	18	2	0	0	0	0.047455	1	33956	33956		88.904	30.225	1	9297200	+		14983	20338	10882	10962	14627	14627					0.0802602223127451
FLNMLTKSRQL	11	Unmodified	_FLNMLTKSRQL_					0	0	0			REV__ENST00000474125.6_1_10:102771704-102781716:-|nuORF	REV__ENST00000474125.6_1_10:102771704-102781716:-|nuORF	MSMS	A375_MHC_IP_R2	2	675.7841796875	2	675.881747	1349.74894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.55	1	129.78	129.28	130.28	0.23946								0	0	0	0.16265	1	50911	50911		4.897	0.36815	1		+		14984	21991	10883	10963	14628	14628					0.0880565254224166
FLNNQEYVL	9	Unmodified	_FLNNQEYVL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R1	1	569.6153564453125	2	570.290214	1138.56587	-0.26509	-0.00015118	0.10458	5.9644E-05	-0.16051	-9.1537E-05	570.2903015904118	100.67	1.3162	100.67	100.33	101.65	0					59	25	4	0	0	0	0.014271	1	37007	37007		112.59	51.236	1	15037000			14985	3298	10884	10964	14629	14629					0.0021342175209611014
FLNNQEYVL	9	Unmodified	_FLNNQEYVL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R2	2	569.6732788085938	2	570.290214	1138.56587	-0.064429	-3.6743E-05	0.08564	4.884E-05	0.021211	1.2096E-05	570.2902628712112	99.859	1.4286	100.62	100.27	101.7	0.76278					65	27	4	0	0	0	0.014271	1	37866	37866		112.59	51.236	1	12592000			14986	3298	10884	10964	14630	14630					0.0021342175209611014
FLNNQIKEL	9	Unmodified	_FLNNQIKEL_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-SECPEP	A375_MHC_IP_R2	2	560.213134765625	2	559.813856	1117.61316	-0.5957	-0.00033348	-0.090656	-5.0751E-05	-0.68636	-0.00038423	559.8138758286963	63.933	0.456	64.674	64.394	64.85	0.74022					11	8	2	0	0	0	0.062502	1	24242	24242		74.2	3.8677	1	2283500			14987	2486	10885	10965	14631	14631					0.05905701023084475
FLNPVAML	8	Unmodified	_FLNPVAML_					0	0	0			REV__ENSG00000147471|ENST00000328195|PLPBP	REV__ENSG00000147471|ENST00000328195|PLPBP	MSMS	A375_MHC_IP_R1	1	452.642578125	2	452.751682	903.48881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.737	1	69.737	69.237	70.237	0								0	0	0	0.16876	1	25311	25311		14.582	0	1		+		14988	19590	10886	10966	14632	14632					0.03320532002044274
FLNRRRRRER	10	Unmodified	_FLNRRRRRER_					0	0	0		ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	MULTI-MSMS	A375_MHC_IP_R2	2	730.3342895507812	2	729.934891	1457.85523	-0.7569	-0.00055249	0.28033	0.00020462	-0.47657	-0.00034786	729.9349706207418	132.55	1.321	132.74	131.85	133.17	0.18953					86	25	4	0	0	0	0.72378	1	51888	51888		1.6526	1.6526	1	82918000			14989	5856	10887	10967	14633	14633					0.1446158894243581
FLNRRRRRER	10	Unmodified	_FLNRRRRRER_					0	0	0		ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	MULTI-MSMS	A375_MHC_IP_R2	2	730.3345336914062	2	729.934891	1457.85523	-0.72763	-0.00053112	0.33703	0.00024601	-0.3906	-0.00028511	729.935028206656	133.41	2.6946	133.58	133.09	135.79	0.16487					147	52	4	0	0	0	0.72658	2	52787	52787;53005		0.40072	0.40072	1	151810000			14990	5856	10887	10967	14634;14635	14634					0.1446158894243581
FLNRRRRRER	10	Unmodified	_FLNRRRRRER_					0	0	0		ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	MSMS	A375_MHC_IP_R2	2	729.844970703125	2	729.934891	1457.85523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.51	1	136.62	136.12	137.12	0.11134								0	0	0	0.15629	1	53617	53617		0.40072	0.050084	1				14991	5856	10887	10967	14636	14636					0.1446158894243581
FLNRRRRRER	10	Unmodified	_FLNRRRRRER_					0	0	0		ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	729.934891	1457.85523	-0.7569	-0.00055249	0.28033	0.00020462	-0.47657	-0.00034786	729.9349706207418	132.55	1.321	132.74	131.85	133.17	0.18953	0.043629	-0.00010256	NaN	1.6526	86	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82918000			14992	5856	10887	10967							0.1446158894243581
FLNRRRRRERR	11	Unmodified	_FLNRRRRRERR_					0	0	0		ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	MSMS	A375_MHC_IP_R2	2	808.3841552734375	2	807.985447	1613.95634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.55	1	140.59	140.09	141.09	0.04216								0	0	0	0.1636	1	55014	55014		0	0	1				14993	5856	10888	10968	14637	14637					0.173920406451316
FLNSTFKFYF	10	Unmodified	_FLNSTFKFYF_					0	0	0		nc|ENSG00000196712|P21359-5|NF1	nc|ENSG00000196712|P21359-5|NF1	nc|ENSG00000196712|P21359-5|NF1	MSMS	A375_MHC_IP_R1	1	657.2555541992188	2	657.331882	1312.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.755	1	89.755	89.255	90.255	0								0	0	0	0.15398	1	32977	32977		7.9102	0.62092	1				14994	14839	10889	10969	14638	14638					0.005391581999219852
FLPASNLFFRV	11	Unmodified	_FLPASNLFFRV_					0	0	0		nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-4|TMTC4;ENST00000478272.1_1_13:101287253-101288829:-|nuORF	nc|ENSG00000125247|Q5T4D3-2|TMTC4	nc|ENSG00000125247|Q5T4D3-2|TMTC4	MSMS	A375_MHC_IP_R2	2	655.8195190429688	2	655.866423	1309.71829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.7	1	101.46	100.96	101.96	0.76278								0	0	0	0.16191	1	38179	38179		8.7454	0	1				14995	3946	10890	10970	14639	14639					0.07582242219496038
FLPDANSSV	9	Unmodified	_FLPDANSSV_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	A375_MHC_IP_R2	2	475.6344299316406	2	475.234907	948.455261	-0.84639	-0.00040223	0.16549	7.8648E-05	-0.6809	-0.00032359	475.2349869540085	61.19	1.616	61.935	61.16	62.776	0.74504					67	31	3	0	0	0	0.018261	1	23134	23134		85.642	37.893	1	9616700			14996	7403	10891	10971	14640	14640					-0.021027982361374598
FLPDIFTEL	9	Unmodified	_FLPDIFTEL_					0	0	0		TLR4|p.Q562Tfs*9|1|0.19|ENSG00000136869|chr9:117713805-117713806|-/A|frameshift_variant;nc|ENSG00000136869|O00206-3|TLR4;nc|ENSG00000136869|O00206-2|TLR4;ENSG00000136869|ENST00000355622|TLR4;TLR4|p.E485K|5|0.39|ENSG00000136869|chr9:117713581-117713581|G/A|missense_variant	TLR4|p.Q562Tfs*9|1|0.19|ENSG00000136869|chr9:117713805-117713806|-/A|frameshift_variant	TLR4|p.Q562Tfs*9|1|0.19|ENSG00000136869|chr9:117713805-117713806|-/A|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	548.1913452148438	2	547.792058	1093.56956	-0.81364	-0.0004457	0.043302	2.372E-05	-0.77033	-0.00042198	547.7919603548554	134.75	0.71237	134.75	134.57	135.28	0					26	13	3	0	0	0	0.064992	1	51951	51951		68.081	10.609	1	44822000			14997	4832	10892	10972	14641	14641					0.02652091525965261
FLPDIFTEL	9	Unmodified	_FLPDIFTEL_					0	0	0		TLR4|p.Q562Tfs*9|1|0.19|ENSG00000136869|chr9:117713805-117713806|-/A|frameshift_variant;nc|ENSG00000136869|O00206-3|TLR4;nc|ENSG00000136869|O00206-2|TLR4;ENSG00000136869|ENST00000355622|TLR4;TLR4|p.E485K|5|0.39|ENSG00000136869|chr9:117713581-117713581|G/A|missense_variant	TLR4|p.Q562Tfs*9|1|0.19|ENSG00000136869|chr9:117713805-117713806|-/A|frameshift_variant	TLR4|p.Q562Tfs*9|1|0.19|ENSG00000136869|chr9:117713805-117713806|-/A|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	548.19189453125	2	547.792058	1093.56956	-0.67644	-0.00037055	0.2918	0.00015984	-0.38465	-0.00021071	547.7921165279574	134.58	0.70889	134.72	134.55	135.25	0.13901					28	13	3	0	0	0	0.040439	1	52943	52943		92.822	22.107	1	33669000			14998	4832	10892	10972	14642	14642					0.02652091525965261
FLPDLAFSF	9	Unmodified	_FLPDLAFSF_					0	0	0		GDF3|p.R3C|1|0.4|ENSG00000184344|chr12:7695722-7695722|G/A|missense_variant;ENSG00000184344|ENST00000329913|GDF3	GDF3|p.R3C|1|0.4|ENSG00000184344|chr12:7695722-7695722|G/A|missense_variant	GDF3|p.R3C|1|0.4|ENSG00000184344|chr12:7695722-7695722|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	528.2884521484375	2	528.773668	1055.53278	-0.74134	-0.000392	-0.022082	-1.1676E-05	-0.76342	-0.00040368	528.7734119613915	84.85	0.81866	84.85	84.442	85.261	0					10	7	2	0	0	0	0.5339	1	31189	31189		18.135	0	1	1425900			14999	8572	10893	10973	14643	14643					0.007238397000492114
FLPDVKTRAEF	11	Unmodified	_FLPDVKTRAEF_					0	0	0			REV__ENST00000571102.1_1_16:3018320-3020013:-|nuORF	REV__ENST00000571102.1_1_16:3018320-3020013:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	442.1267395019531	3	441.574955	1321.70304	-0.65691	-0.00029007	0.09797	4.3261E-05	-0.55894	-0.00024681	441.909342188765	60.308	0.61229	61.053	60.701	61.314	0.74504					25	11	3	0	0	0	0.73149	1	22838	22838		7.4771	1.9538	1	2189700	+		15000	26281	10894	10974	14644	14644					0.05505330631626748
FLPEAFDFI	9	Unmodified	_FLPEAFDFI_					0	0	0		nc|ENSG00000158793|Q86X76-5|NIT1;nc|ENSG00000158793|Q86X76-2|NIT1;nc|ENSG00000158793|Q86X76-4|NIT1;ENSG00000158793|ENST00000368009|NIT1;nc|ENSG00000158793|Q86X76-3|NIT1;ENST00000485594.1_1_1:161088576-161089334:+|nuORF;ENST00000491497.1_1_1:161088534-161089257:+|nuORF	nc|ENSG00000158793|Q86X76-5|NIT1	nc|ENSG00000158793|Q86X76-5|NIT1	MULTI-MSMS	A375_MHC_IP_R1	1	1099.345458984375	1	1098.55062	1097.54335	-0.18119	-0.00019905	-1.1231	-0.0012338	-1.3043	-0.0014329	1098.5496410700944	134.4	0.3537	134.4	134.17	134.52	0					8	6	2	0	0	0	0.01574	1	51842	51842		88.904	54.801	1	3814000			15001	6330	10895	10975	14645	14645					-0.0015217764550925494
FLPEAFDFI	9	Unmodified	_FLPEAFDFI_					0	0	0		nc|ENSG00000158793|Q86X76-5|NIT1;nc|ENSG00000158793|Q86X76-2|NIT1;nc|ENSG00000158793|Q86X76-4|NIT1;ENSG00000158793|ENST00000368009|NIT1;nc|ENSG00000158793|Q86X76-3|NIT1;ENST00000485594.1_1_1:161088576-161089334:+|nuORF;ENST00000491497.1_1_1:161088534-161089257:+|nuORF	nc|ENSG00000158793|Q86X76-5|NIT1	nc|ENSG00000158793|Q86X76-5|NIT1	MULTI-MATCH	A375_MHC_IP_R2	2		1	1098.55062	1097.54335	0.19888	0.00021848	-0.63803	-0.00070091	-0.43915	-0.00048243	1098.54943722963	134.23	0.20573	134.37	134.29	134.49	0.13901	-0.014817	0.00033579	NaN	88.904	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3636000			15002	6330	10895	10975							-0.0015217764550925494
FLPESFDGDP	10	Unmodified	_FLPESFDGDP_					0	0	0		ENST00000582788.5_1_17:37856514-37872404:+|nuORF;nc|ENSG00000141736|P04626-6|ERBB2;nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2	ENST00000582788.5_1_17:37856514-37872404:+|nuORF	ENST00000582788.5_1_17:37856514-37872404:+|nuORF	MSMS	A375_MHC_IP_R2	2	562.2110595703125	2	562.250754	1122.48696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.212	1	78.954	78.454	79.454	0.74293								0	0	0	0.15158	1	29701	29701		14.838	0	1				15003	5270	10896	10976	14646	14646					-0.06938850272854324
FLPESVAVV	9	Unmodified	_FLPESVAVV_					0	0	0		ENSG00000197818|ENST00000361573|SLC9A8;nc|ENSG00000197818|Q9Y2E8-2|SLC9A8	ENSG00000197818|ENST00000361573|SLC9A8	ENSG00000197818|ENST00000361573|SLC9A8	MULTI-MSMS	A375_MHC_IP_R1	1	481.17327880859375	2	480.773668	959.532783	-0.2828	-0.00013596	-0.044744	-2.1512E-05	-0.32754	-0.00015747	480.7735945175114	105.42	1.3738	105.42	104.94	106.32	0					49	26	2	0	0	0	0.03497	1	38657	38657		70.716	14.174	1	4229000			15004	9197	10897	10977	14647	14647					0.05139839700041193
FLPESVAVV	9	Unmodified	_FLPESVAVV_					0	0	0		ENSG00000197818|ENST00000361573|SLC9A8;nc|ENSG00000197818|Q9Y2E8-2|SLC9A8	ENSG00000197818|ENST00000361573|SLC9A8	ENSG00000197818|ENST00000361573|SLC9A8	MULTI-MSMS	A375_MHC_IP_R2	2	481.172607421875	2	480.773668	959.532783	-0.50728	-0.00024389	-0.0099934	-4.8045E-06	-0.51727	-0.00024869	480.7735737398467	104.52	1.8837	105.29	104.85	106.73	0.76308					63	36	3	0	0	0	0.026461	2	39495	39495;39708		77.984	31.063	1	6176600			15005	9197	10897	10977	14648;14649	14648					0.05139839700041193
FLPPAPAAL	9	Unmodified	_FLPPAPAAL_					0	0	0		ENST00000407319.6_1_22:38142252-38150984:+|nuORF	ENST00000407319.6_1_22:38142252-38150984:+|nuORF	ENST00000407319.6_1_22:38142252-38150984:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	448.6899108886719	2	448.765646	895.516739	-0.079226	-3.5554E-05	0.47926	0.00021508	0.40004	0.00017952	448.7658572474216	103.24	0.8149	103.24	102.71	103.52	0					20	15	2	0	0	0	0.60623	1	37835	37835		14.582	2.0501	1	1158500			15006	11609	10898	10978	14650	14650					0.06480178253787017
FLPPAPAAL	9	Unmodified	_FLPPAPAAL_					0	0	0		ENST00000407319.6_1_22:38142252-38150984:+|nuORF	ENST00000407319.6_1_22:38142252-38150984:+|nuORF	ENST00000407319.6_1_22:38142252-38150984:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	449.1656494140625	2	448.765646	895.516739	-0.30908	-0.00013871	0.12577	5.6442E-05	-0.18331	-8.2264E-05	448.7656067486136	102.37	0.91384	103.13	102.72	103.63	0.76428					23	17	2	0	0	0	0.27873	1	38810	38810		45.75	24.879	1	1326200			15007	11609	10898	10978	14651	14651					0.06480178253787017
FLPPAQVTV	9	Unmodified	_FLPPAQVTV_					0	0	0		ENST00000464829.5_1_9:33469994-33473843:-|nuORF;nc|ENSG00000165271|Q9H6R4-3|NOL6;nc|ENSG00000165271|Q9H6R4-2|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6;ENSG00000165271|ENST00000297990|NOL6	ENST00000464829.5_1_9:33469994-33473843:-|nuORF	ENST00000464829.5_1_9:33469994-33473843:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	486.4725646972656	2	486.28166	970.548768	-0.50107	-0.00024366	0.070565	3.4314E-05	-0.43051	-0.00020935	486.2816601070022	90.789	2.1293	91.523	90.854	92.983	0.73451					95	41	4	0	0	0	0.2002	1	34739	34739		37.974	0	1	13504000			15008	6933	10899	10979	14652	14652					0.062315459369415294
FLPPAQVTV	9	Unmodified	_FLPPAQVTV_					0	0	0		ENST00000464829.5_1_9:33469994-33473843:-|nuORF;nc|ENSG00000165271|Q9H6R4-3|NOL6;nc|ENSG00000165271|Q9H6R4-2|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6;ENSG00000165271|ENST00000297990|NOL6	ENST00000464829.5_1_9:33469994-33473843:-|nuORF	ENST00000464829.5_1_9:33469994-33473843:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	486.28166	970.548768	-0.50107	-0.00024366	0.070565	3.4314E-05	-0.43051	-0.00020935	486.2816601070022	90.789	2.1293	91.523	90.854	92.983	0.73451	-0.046679	1.6943E-05	NaN	37.974	95	41	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13504000			15009	6933	10899	10979							0.062315459369415294
FLPPLPTSV	9	Unmodified	_FLPPLPTSV_					0	0	0		nc|ENSG00000068120|Q13057-2|COASY;ENSG00000068120|ENST00000393818|COASY	nc|ENSG00000068120|Q13057-2|COASY	nc|ENSG00000068120|Q13057-2|COASY	MULTI-MSMS	A375_MHC_IP_R2	2	486.1833801269531	2	485.784036	969.553519	-0.57538	-0.00027951	-0.075355	-3.6606E-05	-0.65074	-0.00031612	485.78400100441854	120.42	0.45496	120.95	120.6	121.05	0.5321					9	8	2	0	0	0	0.0036473	1	45982	45982		137.59	77.196	1	17284000			15010	1454	10900	10980	14653	14653					0.06752430079711758
FLPRGMEEF	9	Unmodified	_FLPRGMEEF_					0	0	0		ENSG00000130385|ENST00000252677|BMP15	ENSG00000130385|ENST00000252677|BMP15	ENSG00000130385|ENST00000252677|BMP15	MSMS	A375_MHC_IP_R1	1	563.220947265625	2	563.273509	1124.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.337	1	81.337	80.837	81.837	0								0	0	0	0.15486	1	29721	29721		13.508	3.3245	1				15011	4240	10901	10981	14654	14654					-0.024819032914592754
FLPRKFPSL	9	Unmodified	_FLPRKFPSL_					0	0	0		nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	MULTI-MSMS	A375_MHC_IP_R1	1	369.29052734375	3	368.890327	1103.64915	-0.0096351	-3.5543E-06	0.3854	0.00014217	0.37576	0.00013862	368.89040871530676	67.146	0.716	67.146	66.836	67.552	0					32	13	3	0	0	0	0.56584	1	24321	24321		16.566	6.4153	1	2893400			15012	9937	10902	10982	14655	14655					0.10147202990606274
FLPRKFPSL	9	Unmodified	_FLPRKFPSL_					0	0	0		nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	MULTI-SECPEP	A375_MHC_IP_R2	2	369.29052734375	3	368.890327	1103.64915	0.086538	3.1923E-05	0.25734	9.4929E-05	0.34387	0.00012685	368.8904156473736	66.177	0.81783	66.916	66.629	67.446	0.73811					32	15	3	0	0	0	0.74597	1	25070	25070		12.175	0	1	3171000			15013	9937	10902	10982	14656	14656					0.10147202990606274
FLPSLSARDV	10	Unmodified	_FLPSLSARDV_					0	0	0			REV__ENST00000373314.7_1_9:130268517-130268865:-|nuORF	REV__ENST00000373314.7_1_9:130268517-130268865:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	552.67138671875	2	552.806031	1103.59751	-1.6449	-0.00090932	0.42109	0.00023278	-1.2238	-0.00067654	552.8061817147059	29.106	0.49991	29.805	29.634	30.134	0.69872					14	9	2	0	0	0	0.33265	1	10154	10154		38.176	0.20157	1	10829000	+		15014	24090	10903	10983	14657	14657					0.0498541450601806
FLPSLSARDV	10	Unmodified	_FLPSLSARDV_					0	0	0			REV__ENST00000373314.7_1_9:130268517-130268865:-|nuORF	REV__ENST00000373314.7_1_9:130268517-130268865:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	552.806031	1103.59751	-0.91242	-0.00050439	0.2551	0.00014102	-0.65732	-0.00036337	553.3077748166215	29.898	0.39675	29.898	29.703	30.099	0	0.046261	-0.00012011	NaN	38.176	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5730000	+		15015	24090	10903	10983							0.0498541450601806
FLPSLSARDV	10	Unmodified	_FLPSLSARDV_					0	0	0			REV__ENST00000373314.7_1_9:130268517-130268865:-|nuORF	REV__ENST00000373314.7_1_9:130268517-130268865:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	552.806031	1103.59751	-1.6449	-0.00090932	0.42109	0.00023278	-1.2238	-0.00067654	552.8061817147059	29.106	0.49991	29.805	29.634	30.134	0.69872	-0.046261	6.3413E-05	NaN	38.176	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10829000	+		15016	24090	10903	10983							0.0498541450601806
FLPSQLNSFF	10	Unmodified	_FLPSQLNSFF_					0	0	0			REV__ENST00000499430.6_1_4:4544185-4544311:+|nuORF	REV__ENST00000499430.6_1_4:4544185-4544311:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	400.9410400390625	3	400.541363	1198.60226	-0.27271	-0.00010923	0.73274	0.00029349	0.46003	0.00018426	400.54136277893974	63.82	0.50986	63.82	63.58	64.09	0					21	9	3	0	0	0	0.70496	1	23094	23094		5.7834	0.38072	1	2380100	+		15017	25484	10904	10984	14658	14658					0.010902986487963062
FLQEGDLISA	10	Unmodified	_FLQEGDLISA_					0	0	0		ENSG00000130713|ENST00000372358|EXOSC2;nc|ENSG00000130713|Q13868-3|EXOSC2	ENSG00000130713|ENST00000372358|EXOSC2	ENSG00000130713|ENST00000372358|EXOSC2	MULTI-MSMS	A375_MHC_IP_R1	1	547.1819458007812	2	546.782222	1091.54989	-0.48906	-0.00026741	0.28686	0.00015685	-0.2022	-0.00011056	546.7823263374065	98.107	1.679	98.107	97.743	99.422	0					96	32	5	0	0	0	0.037053	1	35997	35997		79.596	13.14	1	48931000			15018	4269	10905	10985	14659	14659					0.007777155151870829
FLQEGDLISA	10	Unmodified	_FLQEGDLISA_					0	0	0		ENSG00000130713|ENST00000372358|EXOSC2;nc|ENSG00000130713|Q13868-3|EXOSC2	ENSG00000130713|ENST00000372358|EXOSC2	ENSG00000130713|ENST00000372358|EXOSC2	MULTI-MSMS	A375_MHC_IP_R1	1	1092.9569091796875	1	1092.55717	1091.54989	0.14556	0.00015903	0.28953	0.00031633	0.43509	0.00047536	1092.5573178851828	98.185	1.221	98.185	97.794	99.015	0					46	23	4	0	0	0	0.080535	1	36235	36235		67.838	27.888	1	18021000			15019	4269	10905	10985	14660	14660					0.007777155151870829
FLQEGDLISA	10	Unmodified	_FLQEGDLISA_					0	0	0		ENSG00000130713|ENST00000372358|EXOSC2;nc|ENSG00000130713|Q13868-3|EXOSC2	ENSG00000130713|ENST00000372358|EXOSC2	ENSG00000130713|ENST00000372358|EXOSC2	MULTI-MSMS	A375_MHC_IP_R2	2	547.1815795898438	2	546.782222	1091.54989	-0.93186	-0.00050952	0.44388	0.0002427	-0.48798	-0.00026682	546.7823746987002	97.432	1.8314	98.188	97.822	99.653	0.75586					105	35	5	0	0	0	0.037053	1	36907	36907		79.596	13.14	1	64210000			15020	4269	10905	10985	14661	14661					0.007777155151870829
FLQEGDLISA	10	Unmodified	_FLQEGDLISA_					0	0	0		ENSG00000130713|ENST00000372358|EXOSC2;nc|ENSG00000130713|Q13868-3|EXOSC2	ENSG00000130713|ENST00000372358|EXOSC2	ENSG00000130713|ENST00000372358|EXOSC2	MULTI-MATCH	A375_MHC_IP_R2	2		1	1092.55717	1091.54989	-0.056962	-6.2234E-05	0.10691	0.00011681	0.049949	5.4572E-05	1092.557123108256	97.397	1.0182	98.153	97.822	98.84	0.75586	-0.016174	-9.2269E-05	NaN	67.838	45	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21790000			15021	4269	10905	10985							0.007777155151870829
FLQEKSPAV	9	Unmodified	_FLQEKSPAV_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-SECPEP	A375_MHC_IP_R1	1	510.1814880371094	2	509.782025	1017.5495	-0.32225	-0.00016428	-0.15622	-7.9636E-05	-0.47846	-0.00024391	509.781928349143	40.589	0.70818	40.589	40.355	41.063	0					38	13	4	0	0	0	0.011143	1	13941	13941		136.39	57.664	1	22115000			15022	5409	10906	10986	14662	14662					0.04142340585997317
FLQEKSPAV	9	Unmodified	_FLQEKSPAV_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-SECPEP	A375_MHC_IP_R2	2	510.1815490722656	2	509.782025	1017.5495	-0.79059	-0.00040303	-0.056299	-2.87E-05	-0.84689	-0.00043173	509.7819998858871	39.822	1.1163	40.597	40.269	41.386	0.77451					43	21	4	0	0	0	0.011143	1	14706	14706		125.04	52.07	1	22074000			15023	5409	10906	10986	14663	14663					0.04142340585997317
FLQEQPFKDFV	11	Unmodified	_FLQEQPFKDFV_					0	0	0		ENSG00000114124|ENST00000682958|GRK7	ENSG00000114124|ENST00000682958|GRK7	ENSG00000114124|ENST00000682958|GRK7	MSMS	A375_MHC_IP_R1	1	699.5187377929688	2	699.358628	1396.7027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.42	1	118.42	117.92	118.92	0								0	0	0	0.16097	1	43589	43589		13.615	4.8695	1				15024	3200	10907	10987	14664	14664					0.020219109117761036
FLQESQIQY	9	Unmodified	_FLQESQIQY_					0	0	0		ENSG00000198026|ENST00000322927|ZNF335;nc|ENSG00000198026|Q9H4Z2-2|ZNF335	ENSG00000198026|ENST00000322927|ZNF335	ENSG00000198026|ENST00000322927|ZNF335	MULTI-MSMS	A375_MHC_IP_R1	1	386.5719909667969	3	385.860873	1154.56079	0.45782	0.00017666	2.7679	0.001068	3.2258	0.0012447	386.1963555743343	21.173	0.30392	21.173	20.946	21.25	0					11	5	3	0	0	0	0.70307	1	5549	5549		4.1895	1.691	1	822880			15025	9224	10908	10988	14665	14665					-0.010308821105127208
FLQESQQLL	9	Unmodified	_FLQESQQLL_					0	0	0		SPTBN5|p.Q2777Rfs*33|1|0.22|ENSG00000137877|chr15:41857606-41857609|CTGG/-|frameshift_variant;ENSG00000137877|ENST00000320955|SPTBN5	SPTBN5|p.Q2777Rfs*33|1|0.22|ENSG00000137877|chr15:41857606-41857609|CTGG/-|frameshift_variant	SPTBN5|p.Q2777Rfs*33|1|0.22|ENSG00000137877|chr15:41857606-41857609|CTGG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	553.6973876953125	2	553.298039	1104.58152	-0.88517	-0.00048976	0.75938	0.00042016	-0.12579	-6.9598E-05	553.2982094926886	44.638	0.6627	45.407	45.138	45.8	0.7691					26	12	3	0	0	0	0.12592	1	16660	16660		46.021	0.32134	1	4521300			15026	4933	10909	10989	14666	14666					0.033417082691585165
FLQFLLVVLFG	11	Unmodified	_FLQFLLVVLFG_					0	0	0			REV__ENST00000466324.1_1_11:64444212-64481216:-|nuORF	REV__ENST00000466324.1_1_11:64444212-64481216:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	649.4505004882812	2	648.391742	1294.76893	-0.57177	-0.00037073	2.9753	0.0019292	2.4035	0.0015584	648.8945309327502	134.84	0.45485	134.98	134.75	135.2	0.13901					12	8	3	0	0	0	0.73016	1	53036	53036		8.7454	2.0222	1	868430	+		15027	25035	10910	10990	14667	14667					0.13333771544512274
FLQGKERY	8	Unmodified	_FLQGKERY_					0	0	0		ENST00000462794.1_1_22:36912452-36912849:-|nuORF	ENST00000462794.1_1_22:36912452-36912849:-|nuORF	ENST00000462794.1_1_22:36912452-36912849:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1040.3804931640625	1	1040.55236	1039.54508	0.19094	0.00019868	0.1623	0.00016888	0.35323	0.00036756	1040.5525255004468	79.594	0.82053	79.594	79.265	80.086	0					39	15	4	0	0	0	0.97144	1	29175	29175		14.582	0	1	23420000			15028	12205	10911	10991	14668	14668					0.026888761630971203
FLQGKERY	8	Unmodified	_FLQGKERY_					0	0	0		ENST00000462794.1_1_22:36912452-36912849:-|nuORF	ENST00000462794.1_1_22:36912452-36912849:-|nuORF	ENST00000462794.1_1_22:36912452-36912849:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	1040.55236	1039.54508	0.11177	0.0001163	-0.14632	-0.00015226	-0.034553	-3.5954E-05	1040.5520733531544	78.653	0.81223	79.398	79.084	79.896	0.74474	-0.098187	-0.00015641	NaN	14.582	41	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25960000			15029	12205	10911	10991							0.026888761630971203
FLQKNKEY	8	Unmodified	_FLQKNKEY_					0	0	0		ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23;ENSG00000036054|ENST00000394144|TBC1D23	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	534.6361083984375	2	535.287474	1068.5604	-0.93348	-0.00049968	-0.046872	-2.509E-05	-0.98035	-0.00052477	535.287301360035	66.604	0.71477	67.341	67.035	67.75	0.73631					27	13	3	0	0	0	0.90775	1	25302	25302		20.454	1.1966	1	2141400			15030	1135	10912	10992	14669	14669					0.028857429602794582
FLQLETEQV	9	Unmodified	_FLQLETEQV_					0	0	0		ENSG00000111707|ENST00000543473|SUDS3	ENSG00000111707|ENST00000543473|SUDS3	ENSG00000111707|ENST00000543473|SUDS3	MULTI-MSMS	A375_MHC_IP_R1	1	554.2316284179688	2	553.790047	1105.56554	-0.57761	-0.00031987	-0.15015	-8.3154E-05	-0.72776	-0.00040303	553.7899218997356	53.337	0.86397	53.337	53.048	53.912	0					33	16	3	0	0	0	0.41409	1	19093	19093		24.021	24.021	1	4383200			15031	3022	10913	10993	14670	14670					0.01698002032230761
FLQLFEGDD	9	Unmodified	_FLQLFEGDD_					0	0	0		ENSG00000239900|ENST00000623063|ADSL;nc|ENSG00000239900|P30566-2|ADSL;ENST00000477111.2_1_22:40745965-40755045:+|nuORF	ENSG00000239900|ENST00000623063|ADSL	ENSG00000239900|ENST00000623063|ADSL	MULTI-MSMS	A375_MHC_IP_R1	1	542.6544799804688	2	542.253297	1082.49204	-0.391	-0.00021202	1.8818	0.0010204	1.4908	0.00080838	542.2545115525255	47.902	0.5549	47.902	47.567	48.122	0					20	10	4	0	0	0	0.13797	1	16882	16882		43.858	0	1	4278600			15032	9769	10914	10994	14671	14671					-0.04590546410236129
FLQPRLRFG	9	Unmodified	_FLQPRLRFG_					0	0	0			REV__ENST00000582252.1_1_17:61843479-61850864:-|nuORF	REV__ENST00000582252.1_1_17:61843479-61850864:-|nuORF	MSMS	A375_MHC_IP_R1	1	378.6083984375	3	378.557459	1132.65055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.72	1	37.72	37.22	38.22	0								0	0	0	0.1535	1	12736	12736		10.8	0	1		+		15033	26356	10915	10995	14672	14672					0.08952837079368692
FLQREVELA	9	Unmodified	_FLQREVELA_					0	0	0			REV__ENSG00000275793|ENST00000619918|RIMBP3	REV__ENSG00000275793|ENST00000619918|RIMBP3	MULTI-MSMS	A375_MHC_IP_R2	2	553.2052612304688	2	552.806031	1103.59751	-1.6449	-0.00090932	0.42109	0.00023278	-1.2238	-0.00067654	552.8061817147059	29.106	0.49991	29.805	29.634	30.134	0.69872					14	9	2	0	0	0	0.34064	1	10163	10163		27.629	2.6378	1	10829000	+		15034	21741	10916	10996	14673	14673					0.04985414506040797
FLQRLYKRFR	10	Unmodified	_FLQRLYKRFR_					0	0	0			REV__ENSG00000163823|ENST00000296140|CCR1	REV__ENSG00000163823|ENST00000296140|CCR1	MSMS	A375_MHC_IP_R2	2	713.9591674804688	2	713.925138	1425.83572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.34	1	118.95	118.45	119.45	0.60909								0	0	0	0.15435	1	44919	44919		6.7232	0.99131	1		+		15035	20420	10917	10997	14674	14674					0.13983819878944814
FLQRTSLP	8	Unmodified	_FLQRTSLP_					0	0	0		ENST00000313349.3_1_2:64860645-64860798:-|nuORF	ENST00000313349.3_1_2:64860645-64860798:-|nuORF	ENST00000313349.3_1_2:64860645-64860798:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	480.6919250488281	2	481.276909	960.539266	-0.76364	-0.00036752	0.90228	0.00043425	0.13865	6.6727E-05	481.27740544358653	68.178	0.66003	68.178	67.854	68.514	0					26	12	3	0	0	0	0.51146	1	24770	24770		43.858	3.901	1	4330100			15036	10643	10918	10998	14675	14675					0.05741777651417124
FLQRTSLP	8	Unmodified	_FLQRTSLP_					0	0	0		ENST00000313349.3_1_2:64860645-64860798:-|nuORF	ENST00000313349.3_1_2:64860645-64860798:-|nuORF	ENST00000313349.3_1_2:64860645-64860798:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	480.6917724609375	2	481.276909	960.539266	-0.58642	-0.00028223	0.24877	0.00011973	-0.33765	-0.0001625	481.27710313286474	67.22	0.81281	67.957	67.698	68.511	0.73631					32	15	4	0	0	0	0.4193	1	25517	25517		49.933	9.9757	1	3195500			15037	10643	10918	10998	14676	14676					0.05741777651417124
FLQVTATDA	9	Unmodified	_FLQVTATDA_					0	0	0		ENSG00000166341|ENST00000299441|DCHS1;DCHS1|p.D606N|1|0.25|ENSG00000166341|chr11:6634288-6634288|C/T|missense_variant	ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6501770019531	2	483.250557	964.486562	-0.81482	-0.00039376	-0.0040558	-1.96E-06	-0.81888	-0.00039572	483.25053673096954	36.359	0.55983	37.13	36.901	37.461	0.7709					41	10	6	0	0	0	0.16676	1	13232	13232		58.679	2.5018	1	28976000			15038	7061	10919	10999	14677	14677					0.002897747979432097
FLREKQLPY	9	Unmodified	_FLREKQLPY_					0	0	0		nc|ENSG00000172782|Q8N9I5-2|FADS6;nc|ENSG00000172782|Q8N9I5|FADS6;ENSG00000172782|ENST00000612771|FADS6;FADS6|p.E338K|1|0.46|ENSG00000172782|chr17:74878426-74878426|C/T|missense_variant	nc|ENSG00000172782|Q8N9I5-2|FADS6	nc|ENSG00000172782|Q8N9I5-2|FADS6	MULTI-MSMS	A375_MHC_IP_R1	1	399.2676086425781	3	398.560758	1192.66044	-0.11757	-4.686E-05	0.32141	0.0001281	0.20384	8.1243E-05	398.56081742742583	33.668	0.50507	33.668	33.393	33.898	0					22	9	3	0	0	0	0.71358	1	11076	11076		5.7834	5.7834	1	10800000			15039	7736	10920	11000	14678	14678					0.07181980294103596
FLREKSPKF	9	Unmodified	_FLREKSPKF_					0	0	0		ENSG00000169126|ENST00000305242|ODAD2	ENSG00000169126|ENST00000305242|ODAD2	ENSG00000169126|ENST00000305242|ODAD2	MULTI-SECPEP	A375_MHC_IP_R2	2	576.2289428710938	2	576.332216	1150.64988	-0.10033	-5.7822E-05	-4.0011	-0.002306	-4.1015	-0.0023638	576.3291831083212	92.982	0.50605	93.721	93.291	93.797	0.73902					10	9	2	0	0	0	0.69507	1	35351	35351		13.906	0.39817	1	1185600			15040	7383	10921	11001	14679	14679					0.08057997639662062
FLREYFERL	9	Unmodified	_FLREYFERL_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENST00000592194.1_1_17:66508623-66511738:+|nuORF	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-SECPEP	A375_MHC_IP_R1	1	425.2962341308594	3	424.896029	1271.66626	0.022866	9.7157E-06	-0.066404	-2.8215E-05	-0.043538	-1.8499E-05	425.2303120200073	82.52	0.70798	82.52	82.316	83.024	0					20	13	2	0	0	0	0.30942	1	30200	30200		53.47	29.668	1	1898700			15041	2847	10922	11002	14680	14680					0.041290788057494865
FLREYFERL	9	Unmodified	_FLREYFERL_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENST00000592194.1_1_17:66508623-66511738:+|nuORF	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-SECPEP	A375_MHC_IP_R2	2	425.29595947265625	3	424.896029	1271.66626	-0.23335	-9.9147E-05	0.00088688	3.7683E-07	-0.23246	-9.8771E-05	424.89618438058835	81.663	0.50592	82.406	82.128	82.634	0.74293					16	9	2	0	0	0	0.39266	1	31047	31047		39.923	26.404	1	2236500			15042	2847	10922	11002	14681	14681					0.041290788057494865
FLRFFILSAF	10	Unmodified	_FLRFFILSAF_					0	0	0		ENST00000340385.5_1_1:173457036-173457291:+|nuORF	ENST00000340385.5_1_1:173457036-173457291:+|nuORF	ENST00000340385.5_1_1:173457036-173457291:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	631.2588500976562	2	630.860609	1259.70667	-0.86892	-0.00054817	-0.42442	-0.00026775	-1.2933	-0.00081592	630.8603005466725	128.74	1.624	128.98	128.04	129.67	0.23946					44	31	2	0	0	0	0.71118	1	50508	50508		7.2892	1.5574	1	14153000			15043	10856	10923	11003	14682	14682					0.08720045196196224
FLRFFILSAF	10	Unmodified	_FLRFFILSAF_					0	0	0		ENST00000340385.5_1_1:173457036-173457291:+|nuORF	ENST00000340385.5_1_1:173457036-173457291:+|nuORF	ENST00000340385.5_1_1:173457036-173457291:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	630.860609	1259.70667	-0.86892	-0.00054817	-0.42442	-0.00026775	-1.2933	-0.00081592	630.8603005466725	128.74	1.624	128.98	128.04	129.67	0.23946	0.037366	-0.00025029	NaN	7.2892	44	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14153000			15044	10856	10923	11003							0.08720045196196224
FLRLDPTL	8	Unmodified	_FLRLDPTL_					0	0	0		TGFBR2|p.S401F|1|0.4|ENSG00000163513|chr3:30672385-30672385|C/T|missense_variant	TGFBR2|p.S401F|1|0.4|ENSG00000163513|chr3:30672385-30672385|C/T|missense_variant	TGFBR2|p.S401F|1|0.4|ENSG00000163513|chr3:30672385-30672385|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	487.7302551269531	2	487.78711	973.559667	-0.43136	-0.00021041	-0.68679	-0.00033501	-1.1181	-0.00054542	487.78699069743965	85.221	1.8879	85.958	85.472	87.36	0.73602					69	36	4	0	0	0	0.73111	1	32923	32923		25.399	1.3787	1	15088000			15045	29333	10924	11004	14683	14683					0.0718294831123103
FLRLITSVI	9	Unmodified	_FLRLITSVI_					0	0	0		ENST00000369535.4_1_1:115248605-115248731:-|nuORF	ENST00000369535.4_1_1:115248605-115248731:-|nuORF	ENST00000369535.4_1_1:115248605-115248731:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	354.9617919921875	3	354.562099	1060.66447	-0.51368	-0.00018213	-0.066052	-2.342E-05	-0.57973	-0.00020555	354.5620430514286	60.607	0.40638	61.352	61.109	61.515	0.74503					12	7	2	0	0	0	0.70307	1	22977	22977		4.1895	0.86986	1	2336700			15046	11135	10925	11005	14684	14684					0.13656069787793967
FLRLITSVI	9	Unmodified	_FLRLITSVI_					0	0	0		ENST00000369535.4_1_1:115248605-115248731:-|nuORF	ENST00000369535.4_1_1:115248605-115248731:-|nuORF	ENST00000369535.4_1_1:115248605-115248731:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	354.562099	1060.66447	-0.023133	-8.2021E-06	0.23977	8.5015E-05	0.21664	7.6813E-05	354.56217304414093	61.698	0.45988	61.698	61.534	61.994	0	0.1731	0.00014547	NaN	4.1895	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1612500			15047	11135	10925	11005							0.13656069787793967
FLRMCIFLFRK	11	Unmodified	_FLRMCIFLFRK_					0	0	0			REV__ENST00000415922.6_1_6:26638669-26638894:-|nuORF	REV__ENST00000415922.6_1_6:26638669-26638894:-|nuORF	MSMS	A375_MHC_IP_R1	1	737.81591796875	2	737.414703	1472.81485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.313	1	88.313	87.813	88.813	0								0	0	0	0.16302	1	32418	32418		2.9952	1.5133	1		+		15048	24526	10926	11006	14685	14685					0.09735770183419845
FLRNIGLKY	9	Unmodified	_FLRNIGLKY_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	A375_MHC_IP_R2	2	375.26055908203125	3	375.225598	1122.65496	-0.143	-5.3658E-05	1.9688	0.00073875	1.8258	0.00068509	375.2266853189256	25.196	0.8138	25.84	25.568	26.382	0.64368					31	15	3	0	0	0	0.69317	1	8559	8559		7.609	2.7119	1	6194700			15049	5930	10927	11007	14686	14686					0.09854301502264207
FLRPDVYPP	9	Unmodified	_FLRPDVYPP_					0	0	0			REV__PRRC2A|p.L735F|1|0.21|ENSG00000204469|chr6:31629794-31629794|C/T|missense_variant	REV__PRRC2A|p.L735F|1|0.21|ENSG00000204469|chr6:31629794-31629794|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	368.2868957519531	3	368.53432	1102.58113	0.67251	0.00024784	0.51407	0.00018945	1.1866	0.00043729	368.53445944868594	69.807	0.2511	69.807	69.681	69.933	0					7	4	2	0	0	0	0.75466	1	25381	25381		8.1555	5.8728	1	547970	+		15050	27847	10928	11008	14687	14687					0.033943333399292897
FLRPDVYPP	9	Unmodified	_FLRPDVYPP_					0	0	0			REV__PRRC2A|p.L735F|1|0.21|ENSG00000204469|chr6:31629794-31629794|C/T|missense_variant	REV__PRRC2A|p.L735F|1|0.21|ENSG00000204469|chr6:31629794-31629794|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	368.2866516113281	3	368.53432	1102.58113	0.32951	0.00012143	-0.15268	-5.6268E-05	0.17683	6.5167E-05	368.5343361797534	69.018	0.30592	69.753	69.626	69.932	0.73511					7	5	2	0	0	0	0.75466	1	26162	26162		8.1555	0.54658	1	634380	+		15051	27847	10928	11008	14688	14688					0.033943333399292897
FLRQMVLY	8	Unmodified	_FLRQMVLY_					0	0	0			REV__ENSG00000185291|ENST00000331035|IL3RA	REV__ENSG00000185291|ENST00000331035|IL3RA	MULTI-SECPEP	A375_MHC_IP_R1	1	535.195068359375	2	535.296788	1068.57902	-0.55184	-0.0002954	0.12621	6.7559E-05	-0.42563	-0.00022784	535.2968328461229	78.418	0.5582	78.418	77.998	78.556	0					13	10	2	0	0	0	0.972	1	28586	28586		2.8892	0	1	2431800	+		15052	21886	10929	11009	14689	14689					0.04747581330502726
FLRRFSPW	8	Unmodified	_FLRRFSPW_					0	0	0			REV__ENST00000507925.1_1_4:25395483-25396777:+|nuORF	REV__ENST00000507925.1_1_4:25395483-25396777:+|nuORF	MSMS	A375_MHC_IP_R1	1	554.9644775390625	2	554.806168	1107.59778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.426	1	98.426	97.926	98.926	0								0	0	0	0.16876	1	36163	36163		15.768	4.6538	1		+		15053	25574	10930	11010	14690	14690					0.048288790165543105
FLRRRKRFKVL	11	Unmodified	_FLRRRKRFKVL_					0	0	0		ENSG00000204612|ENST00000376708|FOXB2;ENSG00000171956|ENST00000396057|FOXB1	ENSG00000204612|ENST00000376708|FOXB2	ENSG00000204612|ENST00000376708|FOXB2	MULTI-SECPEP	A375_MHC_IP_R1	1	759.5763549804688	2	759.996429	1517.9783	-0.35779	-0.00027192	-0.32481	-0.00024685	-0.68259	-0.00051877	759.9971857403726	125.95	0.25056	125.95	125.8	126.05	0					8	4	3	0	0	0	1.0014	1	48043	48043		0	0	1	11254000			15054	9466	10931	11011	14691	14691					0.2400345234100314
FLRRRKRFQR	10	Unmodified	_FLRRRKRFQR_					0	0	0		ENSG00000170122|ENST00000382500|FOXD4	ENSG00000170122|ENST00000382500|FOXD4	ENSG00000170122|ENST00000382500|FOXD4	MSMS	A375_MHC_IP_R2	2	732.2916259765625	2	731.952553	1461.89055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.19	1	138.28	137.78	138.78	0.083969								0	0	0	0.15591	1	54202	54202		1.6526	0.32309	1				15055	7473	10932	11012	14692	14692					0.17808251470228242
FLRSTASG	8	Unmodified	_FLRSTASG_					0	0	0		ENST00000296802.9_1_5:74062882-74062999:+|nuORF	ENST00000296802.9_1_5:74062882-74062999:+|nuORF	ENST00000296802.9_1_5:74062882-74062999:+|nuORF	MSMS	A375_MHC_IP_R1	1	419.65924072265625	2	419.72451	837.434466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.649	1	68.649	68.149	69.149	0								0	0	0	0.16876	1	24897	24897		11.64	1.4569	1				15056	10511	10933	11013	14693	14693					0.009246561748454951
FLRYLWRNYLY	11	Unmodified	_FLRYLWRNYLY_					0	0	0		HCRTR1|p.D38N|1|0.37|ENSG00000121764|chr1:31619304-31619304|G/A|missense_variant	HCRTR1|p.D38N|1|0.37|ENSG00000121764|chr1:31619304-31619304|G/A|missense_variant	HCRTR1|p.D38N|1|0.37|ENSG00000121764|chr1:31619304-31619304|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	803.9487915039062	2	803.930086	1605.84562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.12	1	114.83	114.33	115.33	0.70985								0	0	0	0.1635	1	43034	43034		0.35063	0.043601	1				15057	14101	10934	11014	14694	14694					0.0669296309370111
FLSADACLWLD	11	Unmodified	_FLSADACLWLD_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MSMS	A375_MHC_IP_R2	2	627.260498046875	2	627.297181	1252.57981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.765	1	82.508	82.008	83.008	0.74293								0	0	0	0.16051	1	31059	31059		13.906	0.39817	1				15058	9308	10935	11015	14695	14695					-0.03637668811143158
FLSDIPETV	9	Unmodified	_FLSDIPETV_					0	0	0		ENST00000465181.1_1_3:38170823-38175531:-|nuORF;nc|ENSG00000060971|P09110-2|ACAA1;ENSG00000060971|ENST00000333167|ACAA1	ENST00000465181.1_1_3:38170823-38175531:-|nuORF	ENST00000465181.1_1_3:38170823-38175531:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	510.6751708984375	2	510.76604	1019.51753	-0.55407	-0.000283	1.559	0.00079627	1.0049	0.00051328	510.76677542207517	100.45	0.40943	101.21	100.93	101.34	0.76278					11	7	2	0	0	0	0.32899	1	38078	38078		28.487	0	1	440120			15059	1316	10936	11016	14696	14696					0.00854928112187281
FLSEEGGHVAV	11	Unmodified	_FLSEEGGHVAV_					0	0	0		nc|ENSG00000114268|Q16877-2|PFKFB4;nc|ENSG00000114268|Q16877-3|PFKFB4;ENSG00000114268|ENST00000232375|PFKFB4;ENST00000417753.5_1_3:48557182-48594149:-|nuORF	nc|ENSG00000114268|Q16877-2|PFKFB4	nc|ENSG00000114268|Q16877-2|PFKFB4	MULTI-SECPEP	A375_MHC_IP_R1	1	572.1898803710938	2	572.785296	1143.55604	-0.3857	-0.00022092	-1.9714	-0.0011292	-2.3571	-0.0013501	572.7854444333663	52.72	0.60995	52.72	52.387	52.997	0					26	11	4	0	0	0	0.67995	1	18832	18832		39.95	11.463	1	2928700			15060	3206	10937	11017	14697	14697					-0.009997662532896356
FLSEEGGHVAV	11	Unmodified	_FLSEEGGHVAV_					0	0	0		nc|ENSG00000114268|Q16877-2|PFKFB4;nc|ENSG00000114268|Q16877-3|PFKFB4;ENSG00000114268|ENST00000232375|PFKFB4;ENST00000417753.5_1_3:48557182-48594149:-|nuORF	nc|ENSG00000114268|Q16877-2|PFKFB4	nc|ENSG00000114268|Q16877-2|PFKFB4	MULTI-SECPEP	A375_MHC_IP_R2	2	573.46337890625	2	572.785296	1143.55604	-0.5941	-0.00034029	-1.6828	-0.00096388	-2.2769	-0.0013042	572.7856431429879	52.008	0.71181	52.76	52.372	53.083	0.75225					18	13	2	0	0	0	0.27744	1	19641	19641		57.722	30.093	1	2582600			15061	3206	10937	11017	14698	14698					-0.009997662532896356
FLSEKDSLL	9	Unmodified	_FLSEKDSLL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MSMS	A375_MHC_IP_R1	1	526.6869506835938	2	526.28714	1050.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.535	1	75.535	75.035	76.035	0								0	0	0	0.026862	1	27520	27520		75.761	4.8963	1				15062	14788	10938	11018	14699	14699					0.03646903520575506
FLSEKDSLL	9	Unmodified	_FLSEKDSLL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R2	2	526.6864624023438	2	526.28714	1050.55973	-0.51612	-0.00027163	-0.067838	-3.5702E-05	-0.58396	-0.00030733	526.286939672627	74.653	0.61127	75.39	75.06	75.671	0.73752					23	11	3	0	0	0	0.087712	1	28326	28326		75.761	20.987	1	4167800			15063	14788	10938	11018	14700	14700					0.03646903520575506
FLSEKLERI	9	Unmodified	_FLSEKLERI_					0	0	0		ENSG00000183291|ENST00000331835|SELENOF	ENSG00000183291|ENST00000331835|SELENOF	ENSG00000183291|ENST00000331835|SELENOF	MULTI-SECPEP	A375_MHC_IP_R2	2	378.5976867675781	3	378.888763	1133.64446	-0.35253	-0.00013357	-0.058156	-2.2035E-05	-0.41069	-0.00015561	378.8887123638531	52.375	0.80759	53.127	52.882	53.69	0.75225					26	15	2	0	0	0	0.67323	1	19743	19743		23.801	7.2352	1	2170000			15064	8481	10939	11019	14701	14701					0.08298274057187882
FLSELTQQL	9	Unmodified	_FLSELTQQL_					0	0	0		ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	540.1922607421875	2	539.792589	1077.57063	-0.47132	-0.00025442	0.10389	5.6079E-05	-0.36743	-0.00019834	539.7925239285296	110.05	1.9899	110.05	109.63	111.62	0					100	38	4	0	0	0	0.0015808	1	40289	40289		155.03	72.497	1	31283000			15065	9780	10940	11020	14702	14702					0.03494305894855643
FLSELTQQL	9	Unmodified	_FLSELTQQL_					0	0	0		ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1080.2974853515625	1	1078.5779	1077.57063	0.29323	0.00031627	0.32591	0.00035152	0.61914	0.00066779	1078.5778621294016	110.06	0.71059	110.06	109.78	110.49	0					25	13	3	0	0	0	0.064406	1	40300	40300		58.679	18.721	1	5407300			15066	9780	10940	11020	14703	14703					0.03494305894855643
FLSELTQQL	9	Unmodified	_FLSELTQQL_					0	0	0		ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	540.1920166015625	2	539.792589	1077.57063	-0.75038	-0.00040505	0.36078	0.00019474	-0.38961	-0.00021031	539.7926425618194	109.21	2.9595	109.96	109.62	112.58	0.74683					131	57	4	0	0	0	0.0069967	2	41365	41165;41365		171.09	88.557	1	23684000			15067	9780	10940	11020	14704;14705	14705					0.03494305894855643
FLSELTQQL	9	Unmodified	_FLSELTQQL_					0	0	0		ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	1078.5779	1077.57063	0.16938	0.00018269	0.42279	0.00045601	0.59217	0.0006387	1078.5779508697428	109.21	0.65934	109.95	109.72	110.38	0.74684	-0.05348	4.9438E-05	NaN	58.679	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3789900			15068	9780	10940	11020							0.03494305894855643
FLSERSLW	8	Unmodified	_FLSERSLW_					0	0	0			REV__nc|ENSG00000133687|Q8IUR5-3|TMTC1	REV__nc|ENSG00000133687|Q8IUR5-3|TMTC1	MULTI-SECPEP	A375_MHC_IP_R2	2	518.689208984375	2	519.274367	1036.53418	-0.60617	-0.00031477	-0.52279	-0.00027147	-1.129	-0.00058624	519.2743226941727	84.206	0.86917	84.946	84.305	85.175	0.73962					26	16	2	0	0	0	0.95423	1	32068	32068		12.532	5.2423	1	1886300	+		15069	18728	10941	11021	14706	14706					0.017374737888076197
FLSFPLPPA	9	Unmodified	_FLSFPLPPA_					0	0	0		ENST00000482704.1_1_2:96688855-96689146:-|nuORF;ENST00000484440.5_1_2:96688852-96698107:-|nuORF	ENST00000482704.1_1_2:96688855-96689146:-|nuORF	ENST00000482704.1_1_2:96688855-96689146:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	495.1799621582031	2	494.778754	987.542954	-0.29174	-0.00014435	2.4338	0.0012042	2.1421	0.0010598	494.7801265561817	142.07	0.35204	142.1	141.82	142.18	0.030731					8	6	2	0	0	0	0.80005	1	55571	55571		4.756	0	1	1447200			15070	12529	10942	11022	14707	14707					0.048684474252809196
FLSGATGLTL	10	Unmodified	_FLSGATGLTL_					0	0	0			REV__ENST00000572732.1_1_16:11785059-11785929:-|nuORF	REV__ENST00000572732.1_1_16:11785059-11785929:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	489.6903381347656	2	490.276575	978.538597	-0.63601	-0.00031182	-0.73708	-0.00036137	-1.3731	-0.00067319	490.27615446544723	67.413	0.81242	67.413	67.194	68.006	0					19	15	2	0	0	0	0.88918	1	24605	24605		13.042	5.7532	1	2318000	+		15071	26288	10943	11023	14708	14708					0.04846938211710494
FLSGIKTV	8	Unmodified	_FLSGIKTV_					0	0	0		ENST00000479942.5_1_2:234198871-234202993:+|nuORF;ENST00000473865.1_1_2:234198871-234200845:+|nuORF	ENST00000479942.5_1_2:234198871-234202993:+|nuORF	ENST00000479942.5_1_2:234198871-234202993:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	433.1626281738281	2	432.763104	863.511654	-0.3902	-0.00016886	-0.31895	-0.00013803	-0.70916	-0.0003069	432.76293011734913	72.437	0.65818	73.172	72.821	73.48	0.73541					18	12	2	0	0	0	0.64636	1	27505	27505		50.855	0	1	1864600			15072	12487	10944	11024	14709	14709					0.07443874391174177
FLSHFRVIY	9	Unmodified	_FLSHFRVIY_					0	0	0		ENST00000493450.1_1_20:37659415-37667183:+|nuORF	ENST00000493450.1_1_20:37659415-37667183:+|nuORF	ENST00000493450.1_1_20:37659415-37667183:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	591.8407592773438	2	591.326934	1180.63931	-0.35299	-0.00020873	-4.3906	-0.0025963	-4.7436	-0.002805	591.324476110309	87.754	0.30688	87.754	87.491	87.798	0					8	5	2	0	0	0	0.38603	1	32197	32197		25.399	4.9457	1	1578800			15073	12681	10945	11025	14710	14710					0.05622014985237911
FLSIIITTVCI	11	Unmodified	_FLSIIITTVCI_					0	0	0		nc|ENSG00000188393|Q6UVW9-2|CLEC2A;ENSG00000188393|ENST00000455827|CLEC2A	nc|ENSG00000188393|Q6UVW9-2|CLEC2A	nc|ENSG00000188393|Q6UVW9-2|CLEC2A	MULTI-SECPEP	A375_MHC_IP_R1	1	407.97265625	3	408.242037	1221.70428	0.078175	3.1914E-05	-1.9776	-0.00080735	-1.8994	-0.00077543	408.24105596759813	70.187	0.45849	70.187	69.882	70.341	0					11	8	2	0	0	0	0.80621	1	25457	25457		15.538	2.6825	1	907200			15074	8906	10946	11026	14711	14711					0.10229828676187935
FLSIKVTEL	9	Unmodified	_FLSIKVTEL_					0	0	0		ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1	ENSG00000039523|ENST00000042381|RIPOR1	ENSG00000039523|ENST00000042381|RIPOR1	MULTI-SECPEP	A375_MHC_IP_R1	1	525.7152099609375	2	525.3157	1048.61685	-0.68738	-0.00036109	0.14452	7.5918E-05	-0.54286	-0.00028517	525.3156627444047	85.896	0.40434	85.896	85.717	86.121	0					16	7	3	0	0	0	0.46045	1	31501	31501		36.127	0	1	3412400			15075	1159	10947	11027	14712	14712					0.09448370796917516
FLSINWERYKY	11	Unmodified	_FLSINWERYKY_					0	0	0			REV__ENST00000325875.7_1_9:86616322-86616406:+|nuORF	REV__ENST00000325875.7_1_9:86616322-86616406:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	506.9274597167969	3	506.92951	1517.7667	-0.84594	-0.00042883	-0.4715	-0.00023902	-1.3174	-0.00066785	506.92931180163527	26.866	1.679	27.526	27.262	28.941	0.65992					105	32	4	0	0	0	0.73679	1	9517	9517		2.4348	1.1051	1	28606000	+		15076	23598	10948	11028	14713	14713					0.028526910687560303
FLSKEIVGV	9	Unmodified	_FLSKEIVGV_					0	0	0		ENSG00000163933|ENST00000296292|RFT1	ENSG00000163933|ENST00000296292|RFT1	ENSG00000163933|ENST00000296292|RFT1	MULTI-SECPEP	A375_MHC_IP_R1	1	496.69427490234375	2	496.294768	990.574983	-0.30011	-0.00014894	-0.30581	-0.00015177	-0.60591	-0.00030071	496.2945386750418	70.52	0.56282	70.52	70.237	70.8	0					18	10	2	0	0	0	0.13208	1	25578	25578		66.457	14.188	1	3179600			15077	6747	10949	11029	14714	14714					0.07931815108429419
FLSKEIVGV	9	Unmodified	_FLSKEIVGV_					0	0	0		ENSG00000163933|ENST00000296292|RFT1	ENSG00000163933|ENST00000296292|RFT1	ENSG00000163933|ENST00000296292|RFT1	MULTI-SECPEP	A375_MHC_IP_R2	2	496.6941833496094	2	496.294768	990.574983	-0.38393	-0.00019054	-0.21802	-0.0001082	-0.60194	-0.00029874	496.29458831833193	69.712	0.71133	70.446	70.081	70.793	0.73421					23	13	2	0	0	0	0.048303	1	26383	26383		74.2	21.931	1	2636400			15078	6747	10949	11029	14715	14715					0.07931815108429419
FLSKQQASQVL	11	Unmodified	_FLSKQQASQVL_					0	0	0		PROS1|p.F414Lfs*33|1|0.11|ENSG00000184500|chr3:93886417-93886417|A/-|frameshift_variant;ENSG00000184500|ENST00000394236|PROS1	PROS1|p.F414Lfs*33|1|0.11|ENSG00000184500|chr3:93886417-93886417|A/-|frameshift_variant	PROS1|p.F414Lfs*33|1|0.11|ENSG00000184500|chr3:93886417-93886417|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	625.2506103515625	2	624.85097	1247.68739	-0.41569	-0.00025974	0.14403	8.9998E-05	-0.27165	-0.00016974	624.8509053301831	51.325	0.45592	51.325	51.119	51.575	0					20	8	4	0	0	0	0.13337	1	18228	18228		92.201	54.025	1	4927400			15079	8589	10950	11030	14716	14716					0.07345044114595112
FLSKQQASQVL	11	Unmodified	_FLSKQQASQVL_					0	0	0		PROS1|p.F414Lfs*33|1|0.11|ENSG00000184500|chr3:93886417-93886417|A/-|frameshift_variant;ENSG00000184500|ENST00000394236|PROS1	PROS1|p.F414Lfs*33|1|0.11|ENSG00000184500|chr3:93886417-93886417|A/-|frameshift_variant	PROS1|p.F414Lfs*33|1|0.11|ENSG00000184500|chr3:93886417-93886417|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	625.2506103515625	2	624.85097	1247.68739	-0.9204	-0.00057512	0.39374	0.00024603	-0.52666	-0.00032908	624.8510739180555	50.532	0.55801	51.286	51.006	51.564	0.75406					24	10	3	0	0	0	0.0358	1	19010	19010		146.68	92.847	1	5975600			15080	8589	10950	11030	14717	14717					0.07345044114595112
FLSLGHTKRPP	11	Unmodified	_FLSLGHTKRPP_					0	0	0			REV__ENST00000261497.8_1_17:20903335-20903428:-|nuORF	REV__ENST00000261497.8_1_17:20903335-20903428:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	626.1559448242188	2	626.861672	1251.70879	-0.42659	-0.00026741	-0.77073	-0.00048314	-1.1973	-0.00075055	626.8610011506388	82.239	2.5337	82.239	81.1	83.634	0					132	49	5	0	0	0	0.8011	1	30093	30093		29.841	0.759	1	103090000	+		15081	23189	10951	11031	14718	14718					0.09300473933990361
FLSLVRVPQ	9	Unmodified	_FLSLVRVPQ_					0	0	0			REV__ENSG00000142182|ENST00000628202|DNMT3L	REV__ENSG00000142182|ENST00000628202|DNMT3L	MULTI-SECPEP	A375_MHC_IP_R2	2	529.9622802734375	2	529.821484	1057.62842	-0.87565	-0.00046394	0.20355	0.00010785	-0.6721	-0.00035609	529.8215818155102	54.19	0.30473	54.941	54.763	55.068	0.75075					9	5	2	0	0	0	0.62767	1	20412	20412		16.942	10.219	1	2193600	+		15082	19297	10952	11032	14719	14719					0.10190612610927019
FLSNDLDLY	9	Unmodified	_FLSNDLDLY_					0	0	0		ATP10B|p.D406N|1|0.36|ENSG00000118322|chr5:160634519-160634519|C/T|missense_variant;nc|ENSG00000118322|O94823-3|ATP10B;nc|ENSG00000118322|O94823-2|ATP10B;ENST00000521033.5_1_5:160061154-160212677:-|nuORF;ENSG00000118322|ENST00000327245|ATP10B	ATP10B|p.D406N|1|0.36|ENSG00000118322|chr5:160634519-160634519|C/T|missense_variant	ATP10B|p.D406N|1|0.36|ENSG00000118322|chr5:160634519-160634519|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	550.7107543945312	2	550.268947	1098.52334	-0.48977	-0.0002695	-0.28363	-0.00015607	-0.7734	-0.00042558	550.2685554821161	102.1	0.70911	102.1	101.85	102.56	0					26	13	3	0	0	0	0.55818	1	37628	37628		16.942	1.0951	1	2113700			15083	200	10953	11033	14720	14720					-0.021979733761327225
FLSQHVLQI	9	Unmodified	_FLSQHVLQI_					0	0	0		nc|ENSG00000088876|Q6P1L6-2|ZNF343;ENSG00000088876|ENST00000278772|ZNF343	nc|ENSG00000088876|Q6P1L6-2|ZNF343	nc|ENSG00000088876|Q6P1L6-2|ZNF343	MULTI-SECPEP	A375_MHC_IP_R2	2	362.46771240234375	3	362.209836	1083.60768	-0.26192	-9.4869E-05	-0.040431	-1.4645E-05	-0.30235	-0.00010951	362.2098079946764	50.695	0.40549	51.449	51.209	51.615	0.75406					11	7	2	0	0	0	0.74875	1	19084	19084		15.248	8.6181	1	1204900			15084	1901	10954	11034	14721	14721					0.06922022231287883
FLSQHVLQI	9	Unmodified	_FLSQHVLQI_					0	0	0		nc|ENSG00000088876|Q6P1L6-2|ZNF343;ENSG00000088876|ENST00000278772|ZNF343	nc|ENSG00000088876|Q6P1L6-2|ZNF343	nc|ENSG00000088876|Q6P1L6-2|ZNF343	MULTI-MATCH	A375_MHC_IP_R1	1		3	362.209836	1083.60768	0.33019	0.0001196	-0.43912	-0.00015905	-0.10893	-3.9455E-05	362.2097174345277	51.633	0.30345	51.633	51.424	51.728	0	0.091876	-8.2085E-05	NaN	15.248	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1207900			15085	1901	10954	11034							0.06922022231287883
FLSSDHLS	8	Unmodified	_FLSSDHLS_					0	0	0		nc|ENSG00000180881|Q9BXY5-3|CAPS2;ENST00000409004.5_1_12:75670025-75710066:-|nuORF;nc|ENSG00000180881|Q9BXY5-2|CAPS2;nc|ENSG00000180881|Q9BXY5|CAPS2;ENSG00000180881|ENST00000699294|CAPS2;nc|ENSG00000180881|Q9BXY5-5|CAPS2	nc|ENSG00000180881|Q9BXY5-3|CAPS2	nc|ENSG00000180881|Q9BXY5-3|CAPS2	MULTI-MSMS	A375_MHC_IP_R2	2	453.62152099609375	2	453.2218	904.429047	-0.21925	-9.937E-05	-0.14403	-6.5277E-05	-0.36328	-0.00016465	453.2217254866315	41.959	0.45958	42.734	42.453	42.913	0.77451					13	8	2	0	0	0	0.77123	1	15634	15634		14.582	0	1	1533500			15086	8323	10955	11035	14722	14722					-0.026990674076273535
FLSSDPSSL	9	Unmodified	_FLSSDPSSL_					0	0	0		ENSG00000170734|ENST00000372236|POLH	ENSG00000170734|ENST00000372236|POLH	ENSG00000170734|ENST00000372236|POLH	MULTI-SECPEP	A375_MHC_IP_R1	1	952.896240234375	1	952.462204	951.454927	-0.072216	-6.8783E-05	-2.5333	-0.0024128	-2.6055	-0.0024816	952.4597467527713	87.023	0.50774	87.023	86.781	87.289	0					13	9	2	0	0	0	0.07754	1	31862	31862		74.423	36.449	1	2102100			15087	7533	10956	11036	14723	14723					-0.022742179560054865
FLSSDPSSL	9	Unmodified	_FLSSDPSSL_					0	0	0		ENSG00000170734|ENST00000372236|POLH	ENSG00000170734|ENST00000372236|POLH	ENSG00000170734|ENST00000372236|POLH	MULTI-SECPEP	A375_MHC_IP_R2	2	952.8961791992188	1	952.462204	951.454927	-0.0025922	-2.469E-06	-1.0927	-0.0010408	-1.0953	-0.0010433	952.4608455611965	86.307	0.41003	87.04	86.896	87.306	0.733					11	7	2	0	0	0	0.1277	1	32818	32818		64.236	20.378	1	2798300			15088	7533	10956	11036	14724	14724					-0.022742179560054865
FLSSSTIL	8	Unmodified	_FLSSSTIL_					0	0	0		ENST00000261530.11_1_14:76679216-76679306:+|nuORF	ENST00000261530.11_1_14:76679216-76679306:+|nuORF	ENST00000261530.11_1_14:76679216-76679306:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	434.6429138183594	2	434.244744	866.474934	-0.080505	-3.4959E-05	0.46444	0.00020168	0.38393	0.00016672	434.24335399238106	111.28	2.2453	112.02	111.19	113.44	0.73692					136	43	5	0	0	0	0.77702	1	41986	41986		5.7604	0	1	13016000			15089	10283	10957	11037	14725	14725					0.03635577774639387
FLSTLEHHL	9	Unmodified	_FLSTLEHHL_					0	0	0		nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	MULTI-SECPEP	A375_MHC_IP_R1	1	366.5975646972656	3	366.197708	1095.57129	0.2375	8.6973E-05	-0.20437	-7.4841E-05	0.033129	1.2132E-05	366.1976387427394	55.304	0.66153	55.304	55.025	55.687	0					16	12	2	0	0	0	0.20094	1	19765	19765		32.786	19.743	1	2867300			15090	4008	10958	11038	14726	14726					0.027331453345595946
FLSVFKKGRR	10	Unmodified	_FLSVFKKGRR_					0	0	0		PLEKHN1|p.R539Pfs*81|1|0.03|ENSG00000187583|chr1:973857-973858|-/CT|frameshift_variant;nc|ENSG00000187583|Q494U1-3|PLEKHN1;ENSG00000187583|ENST00000379410|PLEKHN1;nc|ENSG00000187583|Q494U1-2|PLEKHN1	PLEKHN1|p.R539Pfs*81|1|0.03|ENSG00000187583|chr1:973857-973858|-/CT|frameshift_variant	PLEKHN1|p.R539Pfs*81|1|0.03|ENSG00000187583|chr1:973857-973858|-/CT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	619.7794189453125	2	619.380032	1236.74551	-0.65849	-0.00040786	-0.15003	-9.2926E-05	-0.80852	-0.00050078	619.3799698396497	83.386	0.76358	84.126	83.848	84.611	0.73962					34	14	4	0	0	0	0.93194	1	31678	31678		5.7319	0	1	10785000			15091	8838	10959	11039	14727	14727					0.136607705505412
FLSVYFVSL	9	Unmodified	_FLSVYFVSL_					0	0	0		ENST00000468318.5_1_1:224544626-224544740:+|nuORF	ENST00000468318.5_1_1:224544626-224544740:+|nuORF	ENST00000468318.5_1_1:224544626-224544740:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	538.1403198242188	2	537.797143	1073.57973	-0.66747	-0.00035897	-0.040341	-2.1695E-05	-0.70782	-0.00038066	537.7970162891526	60.015	0.81486	60.015	59.599	60.414	0					26	15	2	0	0	0	0.3607	1	21733	21733		26.884	0	1	2394900			15092	12305	10960	11040	14728	14728					0.045886992511896096
FLSYFDMYFLY	11	Unmodified	_FLSYFDMYFLY_					0	0	0			REV__ENST00000234111.8_1_2:10580547-10580775:-|nuORF	REV__ENST00000234111.8_1_2:10580547-10580775:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	755.2437744140625	2	754.843964	1507.67338	-0.44742	-0.00033773	-0.18979	-0.00014326	-0.63721	-0.00048099	754.8436247834619	101.81	0.55746	101.81	101.6	102.15	0					23	10	3	0	0	0	0.95991	1	37403	37403		18.146	5.9057	1	2812400	+		15093	23082	10961	11041	14729	14729					-0.06015369428678241
FLSYFDMYFLY	11	Unmodified	_FLSYFDMYFLY_					0	0	0			REV__ENST00000234111.8_1_2:10580547-10580775:-|nuORF	REV__ENST00000234111.8_1_2:10580547-10580775:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	755.2435913085938	2	754.843964	1507.67338	-0.76305	-0.00057599	0.61106	0.00046126	-0.15199	-0.00011473	754.8440440527645	101.12	0.40891	101.89	101.7	102.11	0.76428					19	7	3	0	0	0	0.88538	1	38334	38334		24.021	6.9077	1	3249300	+		15094	23082	10961	11041	14730	14730					-0.06015369428678241
FLTDERLCI	9	Unmodified	_FLTDERLCI_					0	0	0			REV__ENST00000421254.1_1_1:117569228-117575092:-|nuORF	REV__ENST00000421254.1_1_1:117569228-117575092:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	554.7061767578125	2	555.286617	1108.55868	-0.50366	-0.00027968	-2.279	-0.0012655	-2.7826	-0.0015452	555.2849051605264	98.211	0.45564	98.211	97.845	98.3	0					13	8	2	0	0	0	0.69504	1	36055	36055		12.532	0	1	1110000	+		15095	24588	10962	11042	14731	14731					0.00874365880008554
FLTDLFSTV	9	Unmodified	_FLTDLFSTV_					0	0	0		ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	MULTI-SECPEP	A375_MHC_IP_R1	1	522.1762084960938	2	521.776408	1041.53826	-0.75126	-0.00039199	-0.01177	-6.1415E-06	-0.76303	-0.00039813	521.7763798559729	132.67	0.20363	132.67	132.54	132.74	0					6	3	2	0	0	0	0.55359	1	51179	51179		28.487	10.352	1	3742800			15096	7068	10963	11043	14732	14732					0.019155184918645318
FLTDLFSTV	9	Unmodified	_FLTDLFSTV_					0	0	0		ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	MULTI-MATCH	A375_MHC_IP_R2	2		2	521.776408	1041.53826	-0.5522	-0.00028812	-0.46135	-0.00024072	-1.0135	-0.00052884	521.7762200540926	132.51	0.20558	132.7	132.56	132.76	0.18954	0.015973	-0.00013561	NaN	28.487	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1661000			15097	7068	10963	11043							0.019155184918645318
FLTDREVRL	9	Unmodified	_FLTDREVRL_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2;ENSG00000067900|ENST00000399799|ROCK1	ENSG00000134318|ENST00000315872|ROCK2;ENSG00000067900|ENST00000399799|ROCK1	ENSG00000134318|ENST00000315872|ROCK2	MULTI-MSMS	A375_MHC_IP_R1	1	383.9524841308594	3	383.552262	1147.63496	0.38999	0.00014958	0.22724	8.7157E-05	0.61723	0.00023674	383.5523185934118	56.779	0.81561	56.779	56.498	57.313	0					29	15	2	0	0	0	0.033808	1	20313	20313		71.708	24.114	1	19835000			15098	4566;1447	10964	11044	14733	14733					0.0670450577167685
FLTDREVRL	9	Unmodified	_FLTDREVRL_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2;ENSG00000067900|ENST00000399799|ROCK1	ENSG00000134318|ENST00000315872|ROCK2;ENSG00000067900|ENST00000399799|ROCK1	ENSG00000134318|ENST00000315872|ROCK2	MULTI-MSMS	A375_MHC_IP_R2	2	383.951904296875	3	383.552262	1147.63496	-0.25287	-9.6991E-05	0.39187	0.0001503	0.13899	5.331E-05	383.55237868952287	55.839	0.91832	56.589	56.337	57.255	0.75014					49	17	4	0	0	0	0.033808	1	21067	21067		71.708	24.114	1	20833000			15099	4566;1447	10964	11044	14734	14734					0.0670450577167685
FLTEAALGDA	10	Unmodified	_FLTEAALGDA_					0	0	0		ENST00000461482.1_1_7:93519395-93519990:-|nuORF;nc|ENSG00000105825|P48307-2|TFPI2;ENSG00000105825|ENST00000222543|TFPI2	ENST00000461482.1_1_7:93519395-93519990:-|nuORF	ENST00000461482.1_1_7:93519395-93519990:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	504.65557861328125	2	504.25584	1006.49713	-0.54095	-0.00027278	0.55873	0.00028174	0.017777	8.9642E-06	504.25618475557695	86.623	1.2684	86.623	86.072	87.34	0					32	24	2	0	0	0	0.52461	1	31782	31782		29.082	8.667	1	4739100			15100	2640	10965	11045	14735	14735					-0.005862425476266253
FLTEFINYI	9	Unmodified	_FLTEFINYI_					0	0	0		ENST00000470203.1_1_20:3171462-3175942:-|nuORF;nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1	ENST00000470203.1_1_20:3171462-3175942:-|nuORF	ENST00000470203.1_1_20:3171462-3175942:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	580.705322265625	2	580.305332	1158.59611	-0.46235	-0.0002683	0.13526	7.8493E-05	-0.32708	-0.00018981	580.305390335839	133.18	0.35736	133.18	133.05	133.41	0					15	6	4	0	0	0	0.01574	1	51363	51363		88.904	42.883	1	10937000			15101	9237	10966	11046	14736	14736					0.023157804172797114
FLTEFINYI	9	Unmodified	_FLTEFINYI_					0	0	0		ENST00000470203.1_1_20:3171462-3175942:-|nuORF;nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1	ENST00000470203.1_1_20:3171462-3175942:-|nuORF	ENST00000470203.1_1_20:3171462-3175942:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	580.7051391601562	2	580.305332	1158.59611	-0.23266	-0.00013502	0.12989	7.5378E-05	-0.10277	-5.9638E-05	580.305359550739	133.01	0.30464	133.17	133.04	133.35	0.16487					12	5	3	0	0	0	0.022213	1	52343	52343		81.613	41.656	1	13138000			15102	9237	10966	11046	14737	14737					0.023157804172797114
FLTEHNSNV	9	Unmodified	_FLTEHNSNV_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-SECPEP	A375_MHC_IP_R1	1	531.1560668945312	2	530.756538	1059.49852	-0.72996	-0.00038743	0.50338	0.00026717	-0.22657	-0.00012026	530.7565920913925	32.335	0.66335	32.335	31.921	32.585	0					20	12	2	0	0	0	0.10362	1	10456	10456		63.961	32.692	1	4473500			15103	5023	10967	11047	14738	14738					-0.028846084588622034
FLTEHNSNV	9	Unmodified	_FLTEHNSNV_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-SECPEP	A375_MHC_IP_R2	2	531.1456909179688	2	530.756538	1059.49852	-0.65401	-0.00034712	0.47803	0.00025372	-0.17598	-9.3404E-05	531.2583064949401	31.573	0.96716	32.304	31.987	32.954	0.73137					32	18	3	0	0	0	0.38578	1	11229	11229		34.402	0.29928	1	5998400			15104	5023	10967	11047	14739	14739					-0.028846084588622034
FLTEINSTV	9	Unmodified	_FLTEINSTV_					0	0	0		ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	MULTI-MSMS	A375_MHC_IP_R1	1	512.671142578125	2	512.27149	1022.52843	-0.52835	-0.00027066	-0.023171	-1.187E-05	-0.55152	-0.00028253	512.2713792818189	87.517	1.0198	87.517	87.083	88.103	0					42	19	4	0	0	0	0.021889	1	32061	32061		81.89	31.957	1	6459100			15105	9749	10968	11048	14740	14740					0.018063304864767815
FLTEINSTV	9	Unmodified	_FLTEINSTV_					0	0	0		ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	MULTI-MSMS	A375_MHC_IP_R2	2	512.6710815429688	2	512.27149	1022.52843	-0.62379	-0.00031955	0.32473	0.00016635	-0.29906	-0.0001532	512.271559504958	86.662	1.5733	87.395	87.049	88.622	0.73301					46	30	3	0	0	0	0.0099105	1	32943	32943		118.89	50.814	1	5996700			15106	9749	10968	11048	14741	14741					0.018063304864767815
FLTELTRLF	9	Unmodified	_FLTELTRLF_					0	0	0		ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF;ENSG00000140319|ENST00000267884|SRP14	ENST00000558243.1_1_15:40330963-40331317:-|nuORF	ENST00000558243.1_1_15:40330963-40331317:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	570.7263793945312	2	570.326599	1138.63865	-0.29683	-0.00016929	-0.69673	-0.00039736	-0.99355	-0.00056665	570.3263452437548	126.82	0.35437	127.08	126.96	127.31	0.26593					12	6	3	0	0	0	0.095445	1	49715	49715		63.961	15.615	1	7479300			15107	5141	10969	11049	14742	14742					0.07487175545497848
FLTFAKNTN	9	Unmodified	_FLTFAKNTN_					0	0	0			REV__chr1:161518137-161519802|161|12.48|0.38|5.02|+|2|FCGR2A,FCGR2A|1	REV__chr1:161518137-161519802|161|12.48|0.38|5.02|+|2|FCGR2A,FCGR2A|1	MSMS	A375_MHC_IP_R1	1	528.1979370117188	2	528.279649	1054.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.68	1	35.68	35.18	36.18	0								0	0	0	0.14631	1	11886	11886		27.629	2.2295	1		+		15108	15669	10970	11050	14743	14743					0.0196545644323578
FLTGMPSFIS	10	Unmodified	_FLTGMPSFIS_					0	0	0			REV__tr|U7SPP7|U7SPP7_FUSNUMethylaspartatemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01855PE=4SV=1	REV__tr|U7SPP7|U7SPP7_FUSNUMethylaspartatemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01855PE=4SV=1	MSMS	A375_MHC_IP_R1	1	550.6173706054688	2	550.27826	1098.54197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.59	1	112.59	112.09	113.09	0								0	0	0	0.15435	1	41263	41263		6.7232	0.96273	1		+		15109	28360	10971	11051	14744	14744					-0.0033613500593219214
FLTGSPYEFF	10	Unmodified	_FLTGSPYEFF_					0	0	0		FGD5|p.S341F|1|0.23|ENSG00000154783|chr3:14820093-14820093|C/T|missense_variant	FGD5|p.S341F|1|0.23|ENSG00000154783|chr3:14820093-14820093|C/T|missense_variant	FGD5|p.S341F|1|0.23|ENSG00000154783|chr3:14820093-14820093|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	604.6865234375	2	604.28714	1206.55973	-0.45622	-0.00027569	-0.53258	-0.00032183	-0.98879	-0.00059752	604.2869618613857	62.751	0.45407	63.493	63.282	63.736	0.74263					13	8	2	0	0	0	0.60556	1	23784	23784		20.454	4.6064	1	2323400			15110	13996	10972	11052	14745	14745					-0.03529096479451255
FLTGSPYEFF	10	Unmodified	_FLTGSPYEFF_					0	0	0		FGD5|p.S341F|1|0.23|ENSG00000154783|chr3:14820093-14820093|C/T|missense_variant	FGD5|p.S341F|1|0.23|ENSG00000154783|chr3:14820093-14820093|C/T|missense_variant	FGD5|p.S341F|1|0.23|ENSG00000154783|chr3:14820093-14820093|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	604.28714	1206.55973	-0.29589	-0.0001788	0.14187	8.5728E-05	-0.15403	-9.3077E-05	604.7890339962487	63.351	0.40746	63.351	63.121	63.529	0	-0.071273	0.00064382	NaN	20.454	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2135300			15111	13996	10972	11052							-0.03529096479451255
FLTGVTTEL	9	Unmodified	_FLTGVTTEL_					0	0	0		ENSG00000177853|ENST00000316045|ZNF518A	ENSG00000177853|ENST00000316045|ZNF518A	ENSG00000177853|ENST00000316045|ZNF518A	MULTI-MSMS	A375_MHC_IP_R1	1	980.9825439453125	1	980.529889	979.522613	0.20261	0.00019866	0.20472	0.00020073	0.40733	0.0003994	980.5301167411868	102.76	0.40663	102.76	102.61	103.01	0					17	7	3	0	0	0	0.040308	1	37841	37841		68.081	7.6912	1	3741800			15112	8113	10973	11053	14746	14746					0.032032319747941074
FLTGVTTEL	9	Unmodified	_FLTGVTTEL_					0	0	0		ENSG00000177853|ENST00000316045|ZNF518A	ENSG00000177853|ENST00000316045|ZNF518A	ENSG00000177853|ENST00000316045|ZNF518A	MULTI-MSMS	A375_MHC_IP_R2	2	981.6119995117188	1	980.529889	979.522613	0.032545	3.1911E-05	-0.40637	-0.00039846	-0.37383	-0.00036655	980.5295923750036	102.03	0.45719	102.79	102.51	102.97	0.76428					14	8	2	0	0	0	0.22528	1	38608	38608		36.127	7.0454	1	4657000			15113	8113	10973	11053	14747	14747					0.032032319747941074
FLTHLFFGGF	10	Unmodified	_FLTHLFFGGF_					0	0	0		ENST00000515144.5_1_5:14488550-14489156:+|nuORF	ENST00000515144.5_1_5:14488550-14489156:+|nuORF	ENST00000515144.5_1_5:14488550-14489156:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	396.6173400878906	3	395.874565	1184.60187	0.28857	0.00011424	0.57005	0.00022567	0.85862	0.00033991	396.2093404339248	48.37	1.4156	48.37	47.618	49.033	0					46	27	2	0	0	0	0.92051	1	17099	17099		2.086	0	1	1464300			15114	12946	10974	11054	14748	14748					0.01694923719628605
FLTKQEILL	9	Unmodified	_FLTKQEILL_					0	0	0		ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1	ENSG00000185043|ENST00000328649|CIB1	ENSG00000185043|ENST00000328649|CIB1	MULTI-SECPEP	A375_MHC_IP_R1	1	553.236572265625	2	552.8368	1103.65905	-0.47221	-0.00026105	-0.015532	-8.5868E-06	-0.48774	-0.00026964	552.836689243039	88.332	0.91793	88.332	88.052	88.97	0					40	17	3	0	0	0	0.20451	1	32389	32389		57.722	13.864	1	9359100			15115	8635	10975	11055	14749	14749					0.1113634620535322
FLTKQEILL	9	Unmodified	_FLTKQEILL_					0	0	0		ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1	ENSG00000185043|ENST00000328649|CIB1	ENSG00000185043|ENST00000328649|CIB1	MULTI-SECPEP	A375_MHC_IP_R2	2	553.2362060546875	2	552.8368	1103.65905	-0.67895	-0.00037535	-0.12354	-6.83E-05	-0.80249	-0.00044365	552.8367005458805	87.359	0.96128	88.092	87.762	88.724	0.733					38	18	3	0	0	0	0.24324	1	33188	33188		53.833	10.06	1	8715300			15116	8635	10975	11055	14750	14750					0.1113634620535322
FLTKRSGY	8	Unmodified	_FLTKRSGY_					0	0	0			REV__nc|ENSG00000239732|Q9NR96-2|TLR9	REV__nc|ENSG00000239732|Q9NR96-2|TLR9	MSMS	A375_MHC_IP_R2	2	486.2945251464844	2	486.269084	970.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.485	1	95.229	94.729	95.729	0.74474								0	0	0	0.16876	1	35906	35906		11.114	1.0405	1		+		15117	22773	10976	11056	14751	14751					0.0371749113437545
FLTTFDRPI	9	Unmodified	_FLTTFDRPI_					0	0	0			REV__ENST00000467024.5_1_20:42242523-42252704:+|nuORF	REV__ENST00000467024.5_1_20:42242523-42252704:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	555.7036743164062	2	555.303124	1108.5917	-0.66725	-0.00037053	-0.48565	-0.00026969	-1.1529	-0.00064021	555.3029941040975	84.628	0.65892	85.364	85.018	85.677	0.73601					23	12	3	0	0	0	0.65748	1	32240	32240		15.847	0	1	2868800	+		15118	17139	10977	11057	14752	14752					0.04174315994373501
FLTVMYLL	8	Unmodified	_FLTVMYLL_					0	0	0		ENSG00000197977|ENST00000354666|ELOVL2	ENSG00000197977|ENST00000354666|ELOVL2	ENSG00000197977|ENST00000354666|ELOVL2	MSMS	A375_MHC_IP_R2	2	500.22369384765625	2	500.282815	998.551076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.09	1	117.75	117.25	118.25	0.65962								0	0	0	0.16876	1	44292	44292		20.871	3.7847	1				15119	9216	10978	11058	14753	14753					0.05174258350393757
FLVAFIKKI	9	Unmodified	_FLVAFIKKI_					0	0	0		ELMO1|p.S177L|1|0.36|ENSG00000155849|chr7:37233114-37233114|G/A|missense_variant	ELMO1|p.S177L|1|0.36|ENSG00000155849|chr7:37233114-37233114|G/A|missense_variant	ELMO1|p.S177L|1|0.36|ENSG00000155849|chr7:37233114-37233114|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	360.2234802246094	3	360.238956	1077.69504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.843	1	72.577	72.077	73.077	0.73421								0	0	0	0.15486	1	27260	27260		4.5289	1.7937	1				15120	833	10979	11059	14754	14754					0.15929848172845595
FLVCLMIWL	9	Unmodified	_FLVCLMIWL_					0	0	0		ENSG00000136546|ENST00000643258|SCN7A;ENST00000424326.5_1_2:167262092-167297919:-|nuORF	ENSG00000136546|ENST00000643258|SCN7A	ENSG00000136546|ENST00000643258|SCN7A	MSMS	A375_MHC_IP_R2	2	379.920654296875	3	379.878153	1136.61263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.364	1	41.138	40.638	41.638	0.77451								0	0	0	0.15486	1	14945	14945		5.7319	0	1				15121	4799	10980	11060	14755	14755					0.0497886677801489
FLVGERVTL	9	Unmodified	_FLVGERVTL_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-SECPEP	A375_MHC_IP_R2	2	517.7051391601562	2	517.305667	1032.59678	-0.79089	-0.00040913	0.73073	0.00037801	-0.060158	-3.112E-05	517.3061449272616	81.884	1.4685	82.627	82.229	83.698	0.74293					47	28	2	0	0	0	0.20059	1	31099	31099		59.368	9.8141	1	7000300			15122	9882	10981	11061	14756	14756					0.08178619856994374
FLVKLFKVKI	10	Unmodified	_FLVKLFKVKI_					0	0	0		tr|U7STF7|U7STF7_FUSNUDUF1576domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01332PE=4SV=1	tr|U7STF7|U7STF7_FUSNUDUF1576domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01332PE=4SV=1	tr|U7STF7|U7STF7_FUSNUDUF1576domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01332PE=4SV=1	MSMS	A375_MHC_IP_R1	1	617.9010620117188	2	617.917927	1233.8213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.4	1	110.4	109.9	110.9	0								0	0	0	0.15628	1	40480	40480		0.45834	0.10771	1				15123	29688	10982	11062	14757	14757					0.21374354678118834
FLVLYKVY	8	Unmodified	_FLVLYKVY_					0	0	0			REV__nc|ENSG00000054392|Q5VTY9-6|HHAT	REV__nc|ENSG00000054392|Q5VTY9-6|HHAT	MULTI-MSMS	A375_MHC_IP_R1	1	523.5032348632812	2	522.810054	1043.60555	-0.48011	-0.00025101	-0.19109	-9.9906E-05	-0.67121	-0.00035091	522.8101266081864	100.33	0.76063	100.33	99.925	100.69	0					20	14	2	0	0	0	0.7758	1	36754	36754		10.183	0.83596	1	1514000	+		15124	16403	10983	11063	14758	14758					0.08549593493467
FLVNNRIL	8	Unmodified	_FLVNNRIL_					0	0	0		tr|U7SKV4|U7SKV4_FUSNUPolysaccharidechainlengthdeterminantN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01945PE=4SV=1	tr|U7SKV4|U7SKV4_FUSNUPolysaccharidechainlengthdeterminantN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01945PE=4SV=1	tr|U7SKV4|U7SKV4_FUSNUPolysaccharidechainlengthdeterminantN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01945PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	495.20037841796875	2	494.800552	987.58655	-0.69274	-0.00034277	0.1261	6.2392E-05	-0.56665	-0.00028038	494.8006859882254	26.399	0.45524	26.399	26.221	26.677	0					12	8	2	0	0	0	0.94479	1	7893	7893		13.508	0	1	4365400			15125	29485	10984	11064	14759	14759					0.09226056922409498
FLVQLVHKY	9	Unmodified	_FLVQLVHKY_					0	0	0			REV__ENST00000488492.5_1_21:35514971-35515094:+|nuORF	REV__ENST00000488492.5_1_21:35514971-35515094:+|nuORF	MSMS	A375_MHC_IP_R1	1	382.89666748046875	3	382.893848	1145.65972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.007	1	27.007	26.507	27.507	0								0	0	0	0.15486	1	8127	8127		4.897	1.0207	1		+		15126	25350	10985	11065	14760	14760					0.09271185645047808
FLVRQPHLGP	10	Unmodified	_FLVRQPHLGP_					0	0	0		ENST00000216185.6_1_22:36863441-36863582:-|nuORF	ENST00000216185.6_1_22:36863441-36863582:-|nuORF	ENST00000216185.6_1_22:36863441-36863582:-|nuORF	MSMS	A375_MHC_IP_R2	2	388.6266784667969	3	388.560981	1162.66111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.622	1	44.392	43.892	44.892	0.76995								0	0	0	0.15451	1	16257	16257		6.1918	3.3486	1				15127	10092	10986	11066	14761	14761					0.08628819733780801
FLVSALSSILF	11	Unmodified	_FLVSALSSILF_					0	0	0		nc|ENSG00000188092|B7ZAQ6-2|GPR89A;ENST00000460277.5_1_1:145765021-145811987:-|nuORF;nc|ENSG00000188092|B7ZAQ6-3|GPR89A;ENSG00000188092|ENST00000314163|GPR89B;ENSG00000117262|ENST00000313835|GPR89A	nc|ENSG00000188092|B7ZAQ6-2|GPR89A	nc|ENSG00000188092|B7ZAQ6-2|GPR89A	MULTI-MSMS	A375_MHC_IP_R2	2	599.2500610351562	2	598.849907	1195.68526	-0.51878	-0.00031067	0.49558	0.00029678	-0.023199	-1.3893E-05	598.850055911629	131.38	0.20581	131.57	131.44	131.65	0.18953					9	3	3	0	0	0	0.52146	1	51706	51706		30.637	0	1	8375800			15128	3468	10987	11067	14762	14762					0.0952461537679028
FLVSNSGDY	9	Unmodified	_FLVSNSGDY_					0	0	0		ENSG00000066629|ENST00000262233|EML1;nc|ENSG00000066629|O00423-3|EML1	ENSG00000066629|ENST00000262233|EML1	ENSG00000066629|ENST00000262233|EML1	MULTI-SECPEP	A375_MHC_IP_R2	2	501.63189697265625	2	501.232364	1000.45018	-0.88997	-0.00044608	0.8992	0.00045071	0.0092285	4.6256E-06	501.2324831501413	49.517	0.91323	50.274	49.894	50.807	0.75737					45	17	4	0	0	0	0.69504	1	18555	18555		4.3292	0	1	23373000			15129	1416	10988	11068	14763	14763					-0.05003102098760337
FLVVNPGR	8	Unmodified	_FLVVNPGR_					0	0	0		ENSG00000186407|ENST00000392619|CD300E;CD300E|p.L155F|1|0.46|ENSG00000186407|chr17:74613959-74613959|G/A|missense_variant	ENSG00000186407|ENST00000392619|CD300E	ENSG00000186407|ENST00000392619|CD300E	MULTI-MSMS	A375_MHC_IP_R1	1	451.1685485839844	2	451.266345	900.518136	-0.34095	-0.00015386	0.52755	0.00023806	0.1866	8.4204E-05	451.2666621000659	27.002	0.70362	27.002	26.728	27.432	0					22	13	2	0	0	0	0.75322	1	8251	8251		19.439	0.18201	1	4992300			15130	8745	10989	11069	14764	14764					0.06389812342570167
FLWDKRTGL	9	Unmodified	_FLWDKRTGL_					0	0	0		ENST00000476983.5_1_1:155238132-155243105:-|nuORF	ENST00000476983.5_1_1:155238132-155243105:-|nuORF	ENST00000476983.5_1_1:155238132-155243105:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	379.613525390625	3	379.213469	1134.61858	0.47328	0.00017947	-0.28489	-0.00010803	0.18839	7.1441E-05	379.21335112475697	72.524	0.70932	72.524	72.271	72.98	0					30	13	4	0	0	0	0.12771	1	26362	26362		35.612	7.3786	1	5149000			15131	12436	10990	11070	14765	14765					0.056654246055586555
FLWDKRTGL	9	Unmodified	_FLWDKRTGL_					0	0	0		ENST00000476983.5_1_1:155238132-155243105:-|nuORF	ENST00000476983.5_1_1:155238132-155243105:-|nuORF	ENST00000476983.5_1_1:155238132-155243105:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	379.6135559082031	3	379.213469	1134.61858	-0.23667	-8.9748E-05	0.23419	8.8807E-05	-0.0024799	-9.4039E-07	379.21349730476896	71.602	0.50559	72.337	72.061	72.567	0.73421					25	9	4	0	0	0	0.082375	1	27154	27154		42.312	10.275	1	7552400			15132	12436	10990	11070	14766	14766					0.056654246055586555
FLWDSYLK	8	Unmodified	_FLWDSYLK_					0	0	0			REV__PADI4|p.S468F|1|0.41|ENSG00000159339|chr1:17356075-17356075|C/T|missense_variant	REV__PADI4|p.S468F|1|0.41|ENSG00000159339|chr1:17356075-17356075|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	358.25482177734375	3	357.855171	1070.54368	0.27459	9.8263E-05	-0.39642	-0.00014186	-0.12183	-4.3599E-05	357.8549620025867	71.64	0.55241	71.64	71.465	72.018	0					26	10	3	0	0	0	0.97144	1	26028	26028		3.5965	0	1	11145000	+		15133	27709	10991	11071	14767	14767					0.011232420743226612
FLWELKRFDA	10	Unmodified	_FLWELKRFDA_					0	0	0			REV__ENST00000296885.7_1_6:88117749-88144792:+|nuORF	REV__ENST00000296885.7_1_6:88117749-88144792:+|nuORF	MSMS	A375_MHC_IP_R2	2	662.81640625	2	662.856055	1323.69756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.944	1	22.563	22.063	23.063	0.61932								0	0	0	0.15591	1	6943	6943		1.6526	0	1		+		15134	22948	10992	11072	14768	14768					0.04865651839850216
FLWERPTLL	9	Unmodified	_FLWERPTLL_					0	0	0		nc|ENSG00000278619|Q6IN84-2|MRM1;ENSG00000278619|ENST00000614766|MRM1	nc|ENSG00000278619|Q6IN84-2|MRM1	nc|ENSG00000278619|Q6IN84-2|MRM1	MULTI-MSMS	A375_MHC_IP_R2	2	588.7362060546875	2	587.834591	1173.65463	-0.382	-0.00022456	-0.47188	-0.00027739	-0.85389	-0.00050194	588.3361112598154	115.28	0.56083	115.97	115.63	116.19	0.68999					15	10	3	0	0	0	0.135	1	43474	43474		47.594	17.37	1	4021200			15135	10038	10993	11073	14769	14769					0.07474881782422926
FLWKEPATM	9	Oxidation (M)	_FLWKEPATM(Oxidation (M))_		FLWKEPATM(1)		FLWKEPATM(44)	0	0	1		ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MSMS	A375_MHC_IP_R2	2	570.2344360351562	2	569.78371	1137.55287	-0.31832	-0.00018137	-0.030275	-1.725E-05	-0.3486	-0.00019862	569.7832677578278	64.786	0.66193	65.524	65.155	65.817	0.73811					20	12	2	0	0	0	0.13845	1	24583	24583		43.772	22.026	1	1186000			15136	5206	10994	11074	14770	14770		278			-0.010407326316908438
FLWKEPATM	9	Oxidation (M)	_FLWKEPATM(Oxidation (M))_					0	0	1		ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MATCH	A375_MHC_IP_R1	1		2	569.78371	1137.55287	-0.43167	-0.00024596	0.91497	0.00052133	0.4833	0.00027538	569.7837297788853	65.541	0.86647	65.541	65.105	65.972	0	0.0087284	0.00070452	NaN	43.772	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1198500			15137	5206	10994	11074				278			-0.010407326316908438
FLWSREAV	8	Unmodified	_FLWSREAV_					0	0	0			REV__ENST00000426112.1_1_22:46942713-46943001:+|nuORF	REV__ENST00000426112.1_1_22:46942713-46943001:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1181945800781	2	504.269084	1006.52362	-0.61644	-0.00031085	-1.9927	-0.0010048	-2.6091	-0.0013157	504.76753180032324	83.845	0.3082	84.585	84.458	84.766	0.73962					7	5	2	0	0	0	0.9187	1	31881	31881		19.257	0	1	609710	+		15138	24643	10995	11075	14771	14771					0.020614911343727726
FLYAGHIFL	9	Unmodified	_FLYAGHIFL_					0	0	0		ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	MULTI-MSMS	A375_MHC_IP_R1	1	540.65478515625	2	540.797478	1079.5804	-0.099953	-5.4054E-05	-1.4185	-0.00076713	-1.5185	-0.00082118	540.7961747968114	114.06	0.4617	114.06	113.8	114.26	0					15	8	3	0	0	0	0.11296	1	41849	41849		56.048	19.542	1	1911900			15139	4369	10996	11076	14772	14772					0.04379538690886875
FLYAGHIFL	9	Unmodified	_FLYAGHIFL_					0	0	0		ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	MULTI-SECPEP	A375_MHC_IP_R1	1	541.1972045898438	2	540.797478	1079.5804	-0.16561	-8.956E-05	-0.11942	-6.4582E-05	-0.28503	-0.00015414	540.7971776006042	113.37	0.75909	113.37	113.04	113.8	0					36	14	3	0	0	0	0.0515	1	41516	41516		79.935	43.468	1	6694000			15140	4369	10996	11076	14773	14773					0.04379538690886875
FLYAGHIFL	9	Unmodified	_FLYAGHIFL_					0	0	0		ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	MULTI-SECPEP	A375_MHC_IP_R2	2	541.1975708007812	2	540.797478	1079.5804	-0.633	-0.00034232	0.27247	0.00014735	-0.36052	-0.00019497	540.7975254621367	112.36	0.71254	113.08	112.76	113.48	0.72458					32	13	3	0	0	0	0.030079	1	42329	42329		93.763	63.538	1	6914500			15141	4369	10996	11076	14774	14774					0.04379538690886875
FLYAGHIFL	9	Unmodified	_FLYAGHIFL_					0	0	0		ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	MULTI-MATCH	A375_MHC_IP_R2	2		2	540.797478	1079.5804	-0.61719	-0.00033377	-1.8624	-0.0010072	-2.4796	-0.001341	541.2979542109902	112.98	0.61404	113.7	113.48	114.09	0.72459	-0.18101	-0.00016725	NaN	56.048	18	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2493000			15142	4369	10996	11076							0.04379538690886875
FLYDDNQRV	9	Unmodified	_FLYDDNQRV_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B	ENSG00000131747|ENST00000423485|TOP2A;ENSG00000077097|ENST00000264331|TOP2B	ENSG00000077097|ENST00000264331|TOP2B	MULTI-MSMS	A375_MHC_IP_R1	1	585.6832885742188	2	585.28292	1168.55129	-0.23491	-0.00013749	0.36956	0.0002163	0.13465	7.8807E-05	585.283110003167	52.192	1.0678	52.192	51.829	52.897	0					46	20	4	0	0	0	0.0090323	1	18540	18540		99.799	73.531	1	10720000			15143	4347;1646	10997	11077	14775	14775					-0.02624650396069228
FLYDDNQRV	9	Unmodified	_FLYDDNQRV_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B	ENSG00000131747|ENST00000423485|TOP2A;ENSG00000077097|ENST00000264331|TOP2B	ENSG00000077097|ENST00000264331|TOP2B	MULTI-MSMS	A375_MHC_IP_R2	2	585.6824951171875	2	585.28292	1168.55129	-0.73316	-0.00042911	-0.09007	-5.2716E-05	-0.82323	-0.00048182	585.2829037684038	51.543	1.0168	52.296	51.966	52.983	0.75225					37	19	3	0	0	0	0.037683	2	19397	19364;19397		69.105	43.706	1	16576000			15144	4347;1646	10997	11077	14776;14777	14777					-0.02624650396069228
FLYFIRLLIIL	11	Unmodified	_FLYFIRLLIIL_					0	0	0			REV__TPTE|p.H207Y|2|0.12|ENSG00000274391|chr21:10569489-10569489|C/T|missense_variant	REV__TPTE|p.H207Y|2|0.12|ENSG00000274391|chr21:10569489-10569489|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	712.4573364257812	2	712.457416	1422.90028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.26	1	124.26	123.76	124.76	0								0	0	0	0.16353	1	46735	46735		0.35063	0	1		+		15145	28155	10998	11078	14778	14778					0.20574581912433132
FLYFLTKIIK	10	Unmodified	_FLYFLTKIIK_					0	0	0			REV__tr|U7SNH6|U7SNH6_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01762PE=4SV=1	REV__tr|U7SNH6|U7SNH6_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01762PE=4SV=1	MSMS	A375_MHC_IP_R2	2	429.2909240722656	3	429.268804	1284.78458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.378	1	78.121	77.621	78.621	0.74293								0	0	0	0.15411	1	29384	29384		7.4771	3.6312	1		+		15146	28327	10999	11079	14779	14779					0.1535805806154258
FLYKMRVY	8	Unmodified	_FLYKMRVY_					0	0	0			REV__nc|ENSG00000154511|Q5T7M9-2|DIPK1A	REV__nc|ENSG00000154511|Q5T7M9-2|DIPK1A	MULTI-SECPEP	A375_MHC_IP_R2	2	373.58905029296875	3	373.872167	1118.59467	0.35165	0.00013147	1.9928	0.00074506	2.3445	0.00087653	374.20717817344905	32.17	0.40753	32.907	32.704	33.112	0.73691					15	7	3	0	0	0	0.972	1	11462	11462		3.5965	0	1	2076900	+		15147	19888	11000	11080	14780	14780					0.040118678475437264
FLYKVVQV	8	Unmodified	_FLYKVVQV_					0	0	0		ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	MULTI-SECPEP	A375_MHC_IP_R1	1	498.4674987792969	2	498.299853	994.585153	-0.43002	-0.00021428	0.013769	6.8612E-06	-0.41625	-0.00020742	498.2998358911191	76.134	0.45458	76.134	75.966	76.421	0					17	8	3	0	0	0	0.64636	1	27761	27761		50.855	18.738	1	1625000			15148	1554	11001	11081	14781	14781					0.0876442283366714
FLYKVVQV	8	Unmodified	_FLYKVVQV_					0	0	0		ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	MULTI-MSMS	A375_MHC_IP_R2	2	498.4668273925781	2	498.299853	994.585153	-0.55168	-0.0002749	-0.053598	-2.6708E-05	-0.60527	-0.00030161	498.2999256577908	75.297	0.45747	76.037	75.824	76.282	0.73969					14	8	2	0	0	0	0.73946	1	28521	28521		23.148	3.7094	1	1818900			15149	1554	11001	11081	14782	14782					0.0876442283366714
FLYKVVQV	8	Unmodified	_FLYKVVQV_					0	0	0		ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	498.299853	994.585153	-0.55168	-0.0002749	-0.053598	-2.6708E-05	-0.60527	-0.00030161	498.2999256577908	75.297	0.45747	76.037	75.824	76.282	0.73969	-0.048591	-6.1028E-05	NaN	77.984	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1818900			15150	1554	11001	11081							0.0876442283366714
FLYMPMHLSRE	11	Unmodified	_FLYMPMHLSRE_					0	0	0			REV__ENSG00000172519|ENST00000642092|OR10H5	REV__ENSG00000172519|ENST00000642092|OR10H5	MULTI-MSMS	A375_MHC_IP_R1	1	475.13421630859375	3	475.233547	1422.67881	-0.82089	-0.00039012	2.2596	0.0010738	1.4387	0.0006837	475.2351631384343	67.322	0.40945	67.322	67.04	67.449	0					10	7	2	0	0	0	0.73332	1	24407	24407		2.6312	0.19645	1	1208800	+		15151	21150	11002	11082	14783	14783					-0.015619691178926587
FLYPFPLAL	9	Unmodified	_FLYPFPLAL_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MSMS	A375_MHC_IP_R1	1	541.2097778320312	2	540.810054	1079.60555	-0.93741	-0.00050696	0.47035	0.00025437	-0.46706	-0.00025259	540.8102215136338	137.31	0.92416	137.31	137.08	138	0					43	17	5	0	0	0	0.015336	2	52859	52823;52859		126.6	76.931	1	75700000			15152	7077	11003	11083	14784;14785	14785					0.06893593493464323
FLYPFPLAL	9	Unmodified	_FLYPFPLAL_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-SECPEP	A375_MHC_IP_R1	1	1079.9774169921875	1	1080.61283	1079.60555	-0.19962	-0.00021571	0.43968	0.00047513	0.24006	0.00025941	1080.613093520205	137.31	1.1291	137.31	137.08	138.2	0					49	21	5	0	0	0	0.030079	1	52922	52922		93.763	65.59	1	111200000			15153	7077	11003	11083	14786	14786					0.06893593493464323
FLYPFPLAL	9	Unmodified	_FLYPFPLAL_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MSMS	A375_MHC_IP_R2	2	540.7477416992188	2	540.810054	1079.60555	-0.65599	-0.00035477	0.055676	3.011E-05	-0.60032	-0.00032466	540.8100175568383	137.19	1.1289	137.27	136.73	137.86	0.083969					46	21	4	0	0	0	0.015336	2	53838	53838;53856		126.6	76.931	1	64042000			15154	7077	11003	11083	14787;14788	14787					0.06893593493464323
FLYPPTHE	8	Unmodified	_FLYPPTHE_					0	0	0			REV__ENST00000414659.5_1_21:47650273-47669514:+|nuORF	REV__ENST00000414659.5_1_21:47650273-47669514:+|nuORF	MSMS	A375_MHC_IP_R2	2	502.18975830078125	2	502.247818	1002.48108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.908	1	67.644	67.144	68.144	0.73631								0	0	0	0.16876	1	25347	25347		15.768	2.2603	1		+		15155	24509	11004	11084	14789	14789					-0.02005903993847369
FLYQLHECI	9	Unmodified	_FLYQLHECI_					0	0	0			REV__nc|ENSG00000090686|Q86UV5-4|USP48	REV__nc|ENSG00000090686|Q86UV5-4|USP48	MULTI-SECPEP	A375_MHC_IP_R2	2	1164.9805908203125	1	1165.57104	1164.56377	0.15763	0.00018372	-2.2362	-0.0026065	-2.0786	-0.0024228	1166.5732783701144	122.81	0.15317	123.19	123.07	123.23	0.37661					4	2	2	0	0	0	0.43707	1	47107	47107		28.487	6.7402	1	27639000	+		15156	27135	11005	11085	14790	14790					-0.011933302573652327
FLYSDEVQI	9	Unmodified	_FLYSDEVQI_					0	0	0		nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2	nc|ENSG00000064726|Q9H0C5-2|BTBD1	nc|ENSG00000064726|Q9H0C5-2|BTBD1	MULTI-MSMS	A375_MHC_IP_R1	1	557.676513671875	2	557.276772	1112.53899	-0.29933	-0.00016681	0.26625	0.00014838	-0.033075	-1.8432E-05	557.2767867722937	107.38	0.81779	107.38	107.08	107.9	0					37	15	3	0	0	0	0.012712	2	39371	39371;39436		92.822	42.889	1	5475700			15157	1358	11006	11086	14791;14792	14791					-0.012776868590890444
FLYSDEVQI	9	Unmodified	_FLYSDEVQI_					0	0	0		nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2	nc|ENSG00000064726|Q9H0C5-2|BTBD1	nc|ENSG00000064726|Q9H0C5-2|BTBD1	MULTI-SECPEP	A375_MHC_IP_R2	2	557.6763916015625	2	557.276772	1112.53899	-0.81869	-0.00045624	0.79685	0.00044407	-0.021843	-1.2172E-05	557.2768127592082	106.68	0.91423	107.44	107.09	108	0.75977					36	17	3	0	0	0	0.037185	1	40298	40298		96.285	37.606	1	5254800			15158	1358	11006	11086	14793	14793					-0.012776868590890444
FLYSPDILI	9	Unmodified	_FLYSPDILI_					0	0	0		ENST00000429705.6_1_3:43328077-43344643:+|nuORF	ENST00000429705.6_1_3:43328077-43344643:+|nuORF	ENST00000429705.6_1_3:43328077-43344643:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	541.2019653320312	2	540.802426	1079.5903	-0.81515	-0.00044083	-0.43539	-0.00023546	-1.2505	-0.00067629	540.8022842947614	131.79	0.25259	131.98	131.85	132.1	0.18953					7	4	2	0	0	0	0.52144	1	51855	51855		30.225	7.0764	1	3899800			15159	11845	11007	11087	14794	14794					0.053686819056110835
FLYTGEGDTV	10	Unmodified	_FLYTGEGDTV_					0	0	0		ENSG00000101966|ENST00000371199|XIAP	ENSG00000101966|ENST00000371199|XIAP	ENSG00000101966|ENST00000371199|XIAP	MULTI-MSMS	A375_MHC_IP_R2	2	551.6578979492188	2	551.258579	1100.50261	-0.76111	-0.00041957	-0.077725	-4.2847E-05	-0.83883	-0.00046241	551.2583828224833	78.058	0.35567	78.801	78.726	79.082	0.74293					10	6	2	0	0	0	0.66712	1	29671	29671		15.847	5.0233	1	2536200			15160	2339	11008	11088	14795	14795					-0.043625637557852315
FLYTKTRFT	9	Unmodified	_FLYTKTRFT_					0	0	0			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-SECPEP	A375_MHC_IP_R1	1	392.281494140625	3	392.885241	1175.63389	-0.24257	-9.5301E-05	-1.8743	-0.0007364	-2.1169	-0.0008317	392.88401008740675	26.556	0.55636	26.556	26.322	26.878	0					21	10	3	0	0	0	0.72623	1	8072	8072		13.615	2.1202	1	1514100	+		15161	22015	11009	11089	14796	14796					0.05310291402770417
FLYYHKLFLLS	11	Unmodified	_FLYYHKLFLLS_					0	0	0			REV__ENST00000394249.7_1_15:91509410-91509812:-|nuORF	REV__ENST00000394249.7_1_15:91509410-91509812:-|nuORF	MSMS	A375_MHC_IP_R2	2	722.3768310546875	2	722.405381	1442.79621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.84	1	128.11	127.61	128.61	0.26593								0	0	0	0.1624	1	50186	50186		6.2058	0	1		+		15162	24304	11010	11090	14797	14797					0.09252255084879835
FMDEDEEVY	9	Oxidation (M)	_FM(Oxidation (M))DEDEEVY_		FM(1)DEDEEVY		FM(78)DEDEEVY	0	0	1		ENSG00000140259|ENST00000267812|MFAP1;ENST00000484386.1_1_15:44097294-44102132:-|nuORF	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	A375_MHC_IP_R1	1	597.1212158203125	2	596.721169	1191.42779	-0.42775	-0.00025525	-0.051973	-3.1013E-05	-0.47973	-0.00028626	596.721192796388	55.038	0.45718	55.038	54.873	55.33	0					18	8	3	0	0	0	0.026461	1	19676	19676		77.984	66.344	1	2286800			15163	5130	11011	11091	14798	14798		273			-0.1602711434934463
FMDEDEEVY	9	Oxidation (M)	_FM(Oxidation (M))DEDEEVY_		FM(1)DEDEEVY		FM(57)DEDEEVY	0	0	1		ENSG00000140259|ENST00000267812|MFAP1;ENST00000484386.1_1_15:44097294-44102132:-|nuORF	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	A375_MHC_IP_R2	2	597.18603515625	2	596.721169	1191.42779	-0.77	-0.00045948	-0.19291	-0.00011512	-0.96292	-0.00057459	596.7210063139667	54.478	0.50585	55.229	55.018	55.523	0.75075					16	9	2	0	0	0	0.067501	2	20571	20571;20592		57.471	41.624	1	3002500			15164	5130	11011	11091	14799;14800	14799		273			-0.1602711434934463
FMDPASALY	9	Oxidation (M)	_FM(Oxidation (M))DPASALY_		FM(1)DPASALY		FM(51)DPASALY	0	0	1		ENSG00000159377|ENST00000290541|PSMB4;ENST00000495288.5_1_1:151372054-151373071:+|nuORF;ENST00000493673.1_1_1:151372075-151372920:+|nuORF;ENST00000476467.1_1_1:151372063-151372664:+|nuORF;PSMB4|p.S30F|2|0.19|ENSG00000159377|chr1:151399676-151399676|C/T|missense_variant	ENSG00000159377|ENST00000290541|PSMB4	ENSG00000159377|ENST00000290541|PSMB4	MULTI-MSMS	A375_MHC_IP_R1	1	516.131591796875	2	515.731143	1029.44773	-0.66884	-0.00034494	-0.14751	-7.6073E-05	-0.81635	-0.00042102	515.7311505040873	86.942	0.9638	86.942	86.376	87.34	0					47	18	3	0	0	0	0.098973	1	31818	31818		50.855	20.63	1	6374100			15165	6369	11012	11092	14801	14801		342			-0.06581273828078338
FMDPASALY	9	Oxidation (M)	_FM(Oxidation (M))DPASALY_		FM(1)DPASALY		FM(51)DPASALY	0	0	1		ENSG00000159377|ENST00000290541|PSMB4;ENST00000495288.5_1_1:151372054-151373071:+|nuORF;ENST00000493673.1_1_1:151372075-151372920:+|nuORF;ENST00000476467.1_1_1:151372063-151372664:+|nuORF;PSMB4|p.S30F|2|0.19|ENSG00000159377|chr1:151399676-151399676|C/T|missense_variant	ENSG00000159377|ENST00000290541|PSMB4	ENSG00000159377|ENST00000290541|PSMB4	MULTI-MSMS	A375_MHC_IP_R2	2	516.1306762695312	2	515.731143	1029.44773	-0.60845	-0.0003138	-0.045723	-2.3581E-05	-0.65417	-0.00033738	515.7312046593028	86.194	1.0198	86.927	86.54	87.56	0.733					46	19	3	0	0	0	0.098973	1	32745	32745		50.855	20.63	1	7537100			15166	6369	11012	11092	14802	14802		342			-0.06581273828078338
FMDPASALY	9	Unmodified	_FMDPASALY_					0	0	0		ENSG00000159377|ENST00000290541|PSMB4;ENST00000495288.5_1_1:151372054-151373071:+|nuORF;ENST00000493673.1_1_1:151372075-151372920:+|nuORF;ENST00000476467.1_1_1:151372063-151372664:+|nuORF;PSMB4|p.S30F|2|0.19|ENSG00000159377|chr1:151399676-151399676|C/T|missense_variant	ENSG00000159377|ENST00000290541|PSMB4	ENSG00000159377|ENST00000290541|PSMB4	MULTI-MSMS	A375_MHC_IP_R1	1	508.13409423828125	2	507.733686	1013.45282	-0.14721	-7.4743E-05	0.47196	0.00023963	0.32475	0.00016489	507.7338200609571	107.98	0.60903	107.98	107.65	108.26	0					19	11	2	0	0	0	0.060021	1	39589	39589		60.39	24.345	1	3270400			15167	6369	11012	11093	14803	14803					-0.05336969965469507
FMDPASALY	9	Unmodified	_FMDPASALY_					0	0	0		ENSG00000159377|ENST00000290541|PSMB4;ENST00000495288.5_1_1:151372054-151373071:+|nuORF;ENST00000493673.1_1_1:151372075-151372920:+|nuORF;ENST00000476467.1_1_1:151372063-151372664:+|nuORF;PSMB4|p.S30F|2|0.19|ENSG00000159377|chr1:151399676-151399676|C/T|missense_variant	ENSG00000159377|ENST00000290541|PSMB4	ENSG00000159377|ENST00000290541|PSMB4	MULTI-MSMS	A375_MHC_IP_R2	2	508.13330078125	2	507.733686	1013.45282	-0.80719	-0.00040984	-0.17519	-8.8952E-05	-0.98238	-0.00049879	507.73366857047	107.32	0.60854	108.07	107.69	108.3	0.75436					20	11	2	0	0	0	0.060021	1	40507	40507		60.39	24.345	1	2962500			15168	6369	11012	11093	14804	14804					-0.05336969965469507
FMDPGPEGKLY	11	Oxidation (M)	_FM(Oxidation (M))DPGPEGKLY_		FM(1)DPGPEGKLY		FM(98)DPGPEGKLY	0	0	1		nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	MULTI-MSMS	A375_MHC_IP_R1	1	635.69482421875	2	635.294639	1268.57472	-0.66476	-0.00042232	-0.039598	-2.5156E-05	-0.70435	-0.00044747	635.2945183978277	54.803	0.50847	54.803	54.567	55.075	0					24	9	3	0	0	0	0.0015281	1	19577	19577		97.741	70.112	1	6167600			15169	1429	11013	11094	14805	14805		40			-0.04881972673729251
FMDPGPEGKLY	11	Oxidation (M)	_FM(Oxidation (M))DPGPEGKLY_		FM(1)DPGPEGKLY		FM(50)DPGPEGKLY	0	0	1		nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	MULTI-MSMS	A375_MHC_IP_R2	2	636.1951904296875	2	635.294639	1268.57472	-1.0877	-0.00069101	-0.31639	-0.000201	-1.4041	-0.00089201	635.2943414363157	54.19	0.50807	54.941	54.66	55.169	0.75075					24	9	3	0	0	0	0.26393	1	20434	20434		49.527	40.144	1	8360200			15170	1429	11013	11094	14806	14806		40			-0.04881972673729251
FMDPGPEGKLY	11	Unmodified	_FMDPGPEGKLY_					0	0	0		nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	MULTI-MSMS	A375_MHC_IP_R2	2	627.7225341796875	2	627.297181	1252.57981	-0.73464	-0.00046084	0.51535	0.00032328	-0.2193	-0.00013756	627.2973353269184	67.943	1.2181	68.678	68.307	69.525	0.73511					37	23	4	0	0	0	0.1757	2	25784	25747;25784		57.108	29.479	1	4263200			15171	1429	11013	11095	14807;14808	14808					-0.0363766881112042
FMDSESFYY	9	Oxidation (M)	_FM(Oxidation (M))DSESFYY_		FM(1)DSESFYY		FM(51)DSESFYY	0	0	1		ENSG00000198825|ENST00000650623|INPP5F;nc|ENSG00000198825|Q9Y2H2-3|INPP5F;nc|ENSG00000198825|Q9Y2H2-2|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MULTI-MSMS	A375_MHC_IP_R1	1	603.2269287109375	2	602.728797	1203.44304	-0.48799	-0.00029412	-1.0059	-0.00060631	-1.4939	-0.00090043	602.7286466029723	90.57	3.2937	90.57	89.679	92.973	0					109	64	2	0	0	0	0.098973	2	33187	33187;33453		50.855	32.72	1	4697500			15172	9337	11014	11096	14809;14810	14809		431			-0.15054202761484703
FMDSESFYY	9	Oxidation (M)	_FM(Oxidation (M))DSESFYY_		FM(1)DSESFYY		FM(78)DSESFYY	0	0	1		ENSG00000198825|ENST00000650623|INPP5F;nc|ENSG00000198825|Q9Y2H2-3|INPP5F;nc|ENSG00000198825|Q9Y2H2-2|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MULTI-SECPEP	A375_MHC_IP_R1	1	603.1278686523438	2	602.728797	1203.44304	-0.56569	-0.00034095	0.032011	1.9294E-05	-0.53367	-0.00032166	602.7288747004571	85.45	1.1159	85.45	85.005	86.121	0					55	21	4	0	0	0	0.061132	1	31223	31223		77.984	62.137	1	19386000			15173	9337	11014	11096	14811	14811		431			-0.15054202761484703
FMDSESFYY	9	Oxidation (M)	_FM(Oxidation (M))DSESFYY_		FM(1)DSESFYY		FM(48)DSESFYY	0	0	1		ENSG00000198825|ENST00000650623|INPP5F;nc|ENSG00000198825|Q9Y2H2-3|INPP5F;nc|ENSG00000198825|Q9Y2H2-2|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MULTI-SECPEP	A375_MHC_IP_R1	1	1203.94384765625	1	1204.45032	1203.44304	-0.15792	-0.00019021	0.3174	0.00038229	0.15948	0.00019209	1204.4505992214324	90.475	2.5833	90.475	89.88	92.463	0					83	50	2	0	0	0	0.28475	1	33750	33750		48.346	48.346	1	2521200			15174	9337	11014	11096	14812	14812		431			-0.15054202761484703
FMDSESFYY	9	Oxidation (M)	_FM(Oxidation (M))DSESFYY_		FM(1)DSESFYY		FM(60)DSESFYY	0	0	1		ENSG00000198825|ENST00000650623|INPP5F;nc|ENSG00000198825|Q9Y2H2-3|INPP5F;nc|ENSG00000198825|Q9Y2H2-2|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MULTI-MSMS	A375_MHC_IP_R2	2	603.1841430664062	2	602.728797	1203.44304	-0.3746	-0.00022578	-1.031	-0.00062139	-1.4056	-0.00084717	602.7285608856623	90.308	2.9455	91.04	90.035	92.98	0.7318					100	57	2	0	0	0	0.060021	1	34612	34612		60.39	51.644	1	3532800			15175	9337	11014	11096	14813	14813		431			-0.15054202761484703
FMDSESFYY	9	Unmodified	_FMDSESFYY_					0	0	0		ENSG00000198825|ENST00000650623|INPP5F;nc|ENSG00000198825|Q9Y2H2-3|INPP5F;nc|ENSG00000198825|Q9Y2H2-2|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MULTI-SECPEP	A375_MHC_IP_R1	1	595.1314086914062	2	594.73134	1187.44813	-0.24072	-0.00014316	0.30646	0.00018226	0.06574	3.9098E-05	594.731478580097	105.88	1.1736	105.88	105.55	106.73	0					52	22	3	0	0	0	0.14105	1	38834	38834		50.855	20.63	1	14088000			15176	9337	11014	11097	14814	14814					-0.13809898898853135
FMDSESFYY	9	Unmodified	_FMDSESFYY_					0	0	0		ENSG00000198825|ENST00000650623|INPP5F;nc|ENSG00000198825|Q9Y2H2-3|INPP5F;nc|ENSG00000198825|Q9Y2H2-2|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MULTI-SECPEP	A375_MHC_IP_R2	2	595.131103515625	2	594.73134	1187.44813	-0.52983	-0.0003151	-0.20022	-0.00011907	-0.73004	-0.00043418	594.7313610152776	105.27	1.2729	106.04	105.67	106.94	0.76308					62	24	5	0	0	0	0.089948	1	39774	39774		70.716	40.491	1	12760000			15177	9337	11014	11097	14815	14815					-0.13809898898853135
FMDWLRVTKDW	11	Unmodified	_FMDWLRVTKDW_					0	0	0			REV__ENST00000471490.1_1_21:45539071-45541135:+|nuORF	REV__ENST00000471490.1_1_21:45539071-45541135:+|nuORF	MSMS	A375_MHC_IP_R2	2	499.6528015136719	3	499.583345	1495.72821	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.587	1	65.327	64.827	65.827	0.74022								0	0	0	0.16223	1	24487	24487		3.5927	0	1		+		15178	22795	11015	11098	14816	14816					0.00017062162555703253
FMECCCCCCEE	11	Unmodified	_FMECCCCCCEE_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R1	1	651.4561767578125	2	651.658451	1301.30235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.866	1	94.866	94.366	95.366	0								0	0	0	0.1636	1	34868	34868		0	0	1				15179	7535	11016	11099	14817	14817					-0.3362497166076537
FMEFLKGSGDY	11	Oxidation (M)	_FM(Oxidation (M))EFLKGSGDY_		FM(1)EFLKGSGDY		FM(49)EFLKGSGDY	0	0	1		ENST00000470661.1_1_6:64237905-64286433:+|nuORF	ENST00000470661.1_1_6:64237905-64286433:+|nuORF	ENST00000470661.1_1_6:64237905-64286433:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	655.692626953125	2	655.292096	1308.56964	-0.54731	-0.00035865	0.25295	0.00016576	-0.29436	-0.00019289	655.2923758987009	65.407	0.61266	65.407	65.156	65.768	0					18	11	3	0	0	0	0.27646	1	23688	23688		48.561	33.312	1	2113300			15180	12341	11017	11100	14818	14818		460			-0.07230276536324709
FMEFLKGSGDY	11	Unmodified	_FMEFLKGSGDY_					0	0	0		ENST00000470661.1_1_6:64237905-64286433:+|nuORF	ENST00000470661.1_1_6:64237905-64286433:+|nuORF	ENST00000470661.1_1_6:64237905-64286433:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	647.6943969726562	2	647.294639	1292.57472	-0.56502	-0.00036573	-0.26527	-0.00017171	-0.83029	-0.00053744	647.2944952186388	90.213	0.55956	90.945	90.699	91.258	0.7318					16	10	2	0	0	0	0.66194	1	34340	34340		37.771	22.523	1	2327800			15181	12341	11017	11101	14819	14819					-0.05985972673715878
FMEKETPLRY	10	Oxidation (M)	_FM(Oxidation (M))EKETPLRY_		FM(1)EKETPLRY		FM(40)EKETPLRY	0	0	1		ENSG00000173852|ENST00000638088|DPY19L1;nc|ENSG00000173852|Q2PZI1|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	MULTI-MSMS	A375_MHC_IP_R1	1	444.21209716796875	3	443.888434	1328.64347	0.053919	2.3934E-05	-0.15499	-6.8798E-05	-0.10107	-4.4864E-05	443.8883546901737	35.245	0.61039	35.245	34.963	35.573	0					37	11	4	0	0	0	0.29671	1	11657	11657		40.317	32.84	1	22734000			15182	7835	11018	11102	14820	14820		391			-0.0077030837403526675
FMEKETPLRY	10	Oxidation (M)	_FM(Oxidation (M))EKETPLRY_		FM(1)EKETPLRY		FM(65)EKETPLRY	0	0	1		ENSG00000173852|ENST00000638088|DPY19L1;nc|ENSG00000173852|Q2PZI1|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	MULTI-MSMS	A375_MHC_IP_R1	1	665.7286987304688	2	665.329013	1328.64347	-0.43729	-0.00029094	0.10794	7.1814E-05	-0.32936	-0.00021913	665.3290308876187	35.244	0.509	35.244	34.963	35.472	0					19	9	3	0	0	0	0.095173	1	11699	11699		64.692	53.197	1	5109000			15183	7835	11018	11102	14821	14821		391			-0.0077030837403526675
FMEKETPLRY	10	Oxidation (M)	_FM(Oxidation (M))EKETPLRY_		FM(1)EKETPLRY		FM(52)EKETPLRY	0	0	1		ENSG00000173852|ENST00000638088|DPY19L1;nc|ENSG00000173852|Q2PZI1|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	MULTI-MSMS	A375_MHC_IP_R1	1	444.2881774902344	3	443.888434	1328.64347	-0.097945	-4.3476E-05	-0.21953	-9.7447E-05	-0.31747	-0.00014092	443.8883346473795	35.965	1.7782	35.965	35.573	37.351	0					82	34	3	0	0	0	0.17118	1	11965	11965		52.193	43.749	1	6919600			15184	7835	11018	11102	14822	14822		391			-0.0077030837403526675
FMEKETPLRY	10	Oxidation (M)	_FM(Oxidation (M))EKETPLRY_		FM(1)EKETPLRY		FM(69)EKETPLRY	0	0	1		ENSG00000173852|ENST00000638088|DPY19L1;nc|ENSG00000173852|Q2PZI1|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	MULTI-MSMS	A375_MHC_IP_R2	2	665.7285766601562	2	665.329013	1328.64347	-1.0636	-0.00070766	-0.17666	-0.00011754	-1.2403	-0.0008252	665.3290788059091	34.458	0.40825	35.211	35.006	35.414	0.75225					19	7	3	0	0	0	0.076247	1	12439	12439		68.76	57.265	1	3576200			15185	7835	11018	11102	14823	14823		391			-0.0077030837403526675
FMEKETPLRY	10	Oxidation (M)	_FM(Oxidation (M))EKETPLRY_		FM(1)EKETPLRY		FM(67)EKETPLRY	0	0	1		ENSG00000173852|ENST00000638088|DPY19L1;nc|ENSG00000173852|Q2PZI1|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	MULTI-SECPEP	A375_MHC_IP_R2	2	443.611328125	3	443.888434	1328.64347	-0.60399	-0.00026811	-0.15171	-6.734E-05	-0.7557	-0.00033545	443.888374329411	34.434	0.91261	35.186	34.955	35.867	0.75225					43	17	4	0	0	0	0.21681	1	12482	12482		66.55	61.834	1	27987000			15186	7835	11018	11102	14824	14824		391			-0.0077030837403526675
FMEKETPLRY	10	Unmodified	_FMEKETPLRY_					0	0	0		ENSG00000173852|ENST00000638088|DPY19L1;nc|ENSG00000173852|Q2PZI1|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	MULTI-MSMS	A375_MHC_IP_R1	1	438.95672607421875	3	438.556796	1312.64856	0.15303	6.7113E-05	-0.27736	-0.00012164	-0.12433	-5.4524E-05	438.556692650833	45.509	0.60487	45.509	45.234	45.839	0					32	11	5	0	0	0	0.0093677	1	15909	15909		103.69	84.065	1	15163000			15187	7835	11018	11103	14825	14825					0.004739954885963016
FMEKETPLRY	10	Unmodified	_FMEKETPLRY_					0	0	0		ENSG00000173852|ENST00000638088|DPY19L1;nc|ENSG00000173852|Q2PZI1|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	MULTI-MSMS	A375_MHC_IP_R2	2	438.9567565917969	3	438.556796	1312.64856	-0.43263	-0.00018973	-0.081293	-3.5652E-05	-0.51393	-0.00022539	438.55676599943524	44.697	0.76279	45.466	45.239	46.001	0.7691					33	14	4	0	0	0	0.0019766	1	16675	16675		112.95	99.427	1	16870000			15188	7835	11018	11103	14826	14826					0.004739954885963016
FMEKETPLRY	10	Unmodified	_FMEKETPLRY_					0	0	0		ENSG00000173852|ENST00000638088|DPY19L1;nc|ENSG00000173852|Q2PZI1|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	MULTI-MSMS	A375_MHC_IP_R2	2	658.2318725585938	2	657.331556	1312.64856	-1.0354	-0.00068059	-0.41836	-0.000275	-1.4537	-0.00095559	657.8326566123992	44.697	0.35689	45.466	45.289	45.646	0.7691					16	6	3	0	0	0	0.5761	1	16701	16701		22.658	4.5117	1	3934600			15189	7835	11018	11103	14827	14827					0.004739954885963016
FMELDEKEG	9	Unmodified	_FMELDEKEG_					0	0	0			REV__nc|ENSG00000134109|Q92611-2|EDEM1	REV__nc|ENSG00000134109|Q92611-2|EDEM1	MSMS	A375_MHC_IP_R1	1	366.4358825683594	3	366.498835	1096.47468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.697	1	25.697	25.197	26.197	0								0	0	0	0.15486	1	7544	7544		2.2828	0.3764	1		+		15190	18753	11019	11104	14828	14828					-0.06970210007557398
FMFDEKLVTV	10	Unmodified	_FMFDEKLVTV_					0	0	0		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	A375_MHC_IP_R1	1	615.7623291015625	2	614.81775	1227.62095	-0.14035	-8.6292E-05	0.51018	0.00031367	0.36983	0.00022738	614.8179718929589	109.75	0.46036	109.75	109.52	109.99	0					16	8	3	0	0	0	0.45919	1	40231	40231		30.637	16.73	1	2559400			15191	3593	11020	11105	14829	14829					0.01624092228325935
FMFDEKLVTV	10	Unmodified	_FMFDEKLVTV_					0	0	0		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	A375_MHC_IP_R2	2	615.2176513671875	2	614.81775	1227.62095	-0.53355	-0.00032804	0.53272	0.00032753	-0.00082878	-5.0955E-07	614.8181346533587	109	0.56175	109.74	109.42	109.98	0.74684					21	10	3	0	0	0	0.11193	2	41158	41116;41158		61.09	37.069	1	2415500			15192	3593	11020	11105	14830;14831	14831					0.01624092228325935
FMFDEKLVTV	10	Oxidation (M)	_FM(Oxidation (M))FDEKLVTV_		FM(1)FDEKLVTV		FM(61)FDEKLVTV	0	0	1		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-SECPEP	A375_MHC_IP_R1	1	623.2149658203125	2	622.815207	1243.61586	-0.3946	-0.00024576	-1.0821	-0.00067394	-1.4767	-0.0009197	623.3160815211226	97.619	0.80913	97.619	97.036	97.845	0					26	15	2	0	0	0	0.31583	1	35854	35854		61.09	43.977	1	1859500			15193	3593	11020	11106	14832	14832		185			0.0037978836571710417
FMGFTVKAPSM	11	Unmodified	_FMGFTVKAPSM_					0	0	0			REV__ENST00000464583.5_1_6:4119386-4125894:-|nuORF	REV__ENST00000464583.5_1_6:4119386-4125894:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	406.2678527832031	3	405.868205	1214.58279	-0.40922	-0.00016609	0.33101	0.00013435	-0.078205	-3.1741E-05	405.86828719176333	52.425	0.55503	53.177	52.882	53.437	0.75225					24	10	3	0	0	0	0.99681	1	19787	19787		4.4062	4.4062	1	2916700	+		15194	25015	11021	11107	14833	14833					-0.015921169579996786
FMGFTVKAPSM	11	Unmodified	_FMGFTVKAPSM_					0	0	0			REV__ENST00000464583.5_1_6:4119386-4125894:-|nuORF	REV__ENST00000464583.5_1_6:4119386-4125894:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	405.868205	1214.58279	-0.41179	-0.00016713	0.15085	6.1227E-05	-0.26093	-0.0001059	405.86835031639333	53.348	0.55826	53.348	52.997	53.555	0	0.085557	-9.159E-05	NaN	4.4062	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2711100	+		15195	25015	11021	11107							-0.015921169579996786
FMILPTLAI	9	Unmodified	_FMILPTLAI_					0	0	0		nc|ENSG00000116704|Q9NTN3-2|SLC35D1;ENSG00000116704|ENST00000235345|SLC35D1	nc|ENSG00000116704|Q9NTN3-2|SLC35D1	nc|ENSG00000116704|Q9NTN3-2|SLC35D1	MULTI-MSMS	A375_MHC_IP_R2	2	509.7212219238281	2	509.803914	1017.59328	-0.57338	-0.00029231	-0.3981	-0.00020295	-0.97148	-0.00049527	509.80366545678345	115.98	0.91335	116.67	116.04	116.95	0.68999					25	17	2	0	0	0	0.55818	1	43491	43491		16.942	0	1	5324400			15196	3421	11022	11108	14834	14834					0.08518233758763927
FMKGVMCAEE	10	Unmodified	_FMKGVMCAEE_					0	0	0			REV__PATE1|p.R79K|1|0.23|ENSG00000171053|chr11:125747811-125747811|G/A|missense_variant	REV__PATE1|p.R79K|1|0.23|ENSG00000171053|chr11:125747811-125747811|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	381.8090515136719	3	382.166034	1143.47627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.183	1	13.183	12.683	13.683	0								0	0	0	0.15618	1	3019	3019		0.77653	0.50751	1		+		15197	27718	11023	11109	14835	14835					-0.0897261551479005
FMLGGPKLW	9	Unmodified	_FMLGGPKLW_					0	0	0			REV__nc|ENSG00000111218|Q9NR22-2|PRMT8	REV__nc|ENSG00000111218|Q9NR22-2|PRMT8	MSMS	A375_MHC_IP_R2	2	524.6255493164062	2	524.786056	1047.55756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.715	1	98.471	97.971	98.971	0.75586								0	0	0	0.15283	1	37084	37084		16.942	2.3606	1		+		15198	17654	11024	11110	14836	14836					0.035681963017623275
FMLPDPQNI	9	Oxidation (M)	_FM(Oxidation (M))LPDPQNI_		FM(1)LPDPQNI		FM(65)LPDPQNI	0	0	1		TSEN15|p.L169F|1|0.19|ENSG00000198860|chr1:184072836-184072836|C/T|missense_variant;TSEN15|p.S168F|1|0.2|ENSG00000198860|chr1:184072834-184072834|C/T|missense_variant;ENST00000423257.1_1_17:17360441-17360570:+|nuORF;ENST00000485209.5_1_1:184027321-184041978:+|nuORF;ENSG00000198860|ENST00000645668|TSEN15	TSEN15|p.L169F|1|0.19|ENSG00000198860|chr1:184072836-184072836|C/T|missense_variant	TSEN15|p.L169F|1|0.19|ENSG00000198860|chr1:184072836-184072836|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	546.1651611328125	2	545.765517	1089.51648	-0.2812	-0.00015347	0.27507	0.00015013	-0.0061227	-3.3416E-06	545.7656339017987	108.2	0.96393	108.2	107.7	108.66	0					40	18	3	0	0	0	0.047602	2	39680	39680;39711		65.235	44.781	1	3839000			15199	9353	11025	11111	14837;14838	14837		432			-0.02469609528361616
FMLPDPQNI	9	Oxidation (M)	_FM(Oxidation (M))LPDPQNI_		FM(1)LPDPQNI		FM(65)LPDPQNI	0	0	1		TSEN15|p.L169F|1|0.19|ENSG00000198860|chr1:184072836-184072836|C/T|missense_variant;TSEN15|p.S168F|1|0.2|ENSG00000198860|chr1:184072834-184072834|C/T|missense_variant;ENST00000423257.1_1_17:17360441-17360570:+|nuORF;ENST00000485209.5_1_1:184027321-184041978:+|nuORF;ENSG00000198860|ENST00000645668|TSEN15	TSEN15|p.L169F|1|0.19|ENSG00000198860|chr1:184072836-184072836|C/T|missense_variant	TSEN15|p.L169F|1|0.19|ENSG00000198860|chr1:184072836-184072836|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	546.1649780273438	2	545.765517	1089.51648	-0.31932	-0.00017427	0.028591	1.5604E-05	-0.29073	-0.00015867	545.7655611714958	109.27	1.6263	109.27	108.81	110.44	0					45	31	3	0	0	0	0.13064	1	40051	40051		65.235	37.606	1	1688100			15200	9353	11025	11111	14839	14839		432			-0.02469609528361616
FMLQMPSELP	10	Unmodified	_FMLQMPSELP_					0	0	0		NLRC5|p.L964F|1|0.3|ENSG00000140853|chr16:57040669-57040669|C/T|missense_variant	NLRC5|p.L964F|1|0.3|ENSG00000140853|chr16:57040669-57040669|C/T|missense_variant	NLRC5|p.L964F|1|0.3|ENSG00000140853|chr16:57040669-57040669|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	596.7325439453125	2	596.790678	1191.5668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.07	1	128.34	127.84	128.84	0.26593								0	0	0	0.15531	1	50273	50273		3.5965	0.31518	1				15201	14998	11026	11112	14840	14840					-0.02131823194849858
FMNPHLISV	9	Unmodified	_FMNPHLISV_					0	0	0		nc|ENSG00000138002|Q9UG01-3|IFT172;ENST00000511842.5_1_2:27693746-27712529:-|nuORF;ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172;ENST00000507184.5_1_2:27680991-27709067:-|nuORF	nc|ENSG00000138002|Q9UG01-3|IFT172;ENSG00000138002|ENST00000260570|IFT172	ENSG00000138002|ENST00000260570|IFT172	MULTI-SECPEP	A375_MHC_IP_R1	1	529.67919921875	2	529.278595	1056.54264	-0.39409	-0.00020858	0.070885	3.7518E-05	-0.32321	-0.00017107	529.2783819528913	82.474	0.76082	82.474	82.113	82.874	0					25	14	3	0	0	0	0.13199	1	30164	30164		75.761	47.274	1	2665800			15202	4942;14631	11027	11113	14841	14841					0.016627044337838015
FMQFRAKDSY	10	Unmodified	_FMQFRAKDSY_					0	0	0		nc|ENSG00000107147|Q5JUK3-4|KCNT1;nc|ENSG00000107147|Q5JUK3|KCNT1;ENSG00000107147|ENST00000371757|KCNT1;nc|ENSG00000107147|Q5JUK3-2|KCNT1	nc|ENSG00000107147|Q5JUK3-4|KCNT1	nc|ENSG00000107147|Q5JUK3-4|KCNT1	MSMS	A375_MHC_IP_R1	1	646.7556762695312	2	646.808248	1291.60194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.941	1	90.941	90.441	91.441	0								0	0	0	0.15353	1	33414	33414		9.3831	0	1				15203	2727	11028	11114	14842	14842					-0.0321944434267607
FMRFPLTMIF	10	Unmodified	_FMRFPLTMIF_					0	0	0			REV__ENSG00000125245|ENST00000397470|GPR18	REV__ENSG00000125245|ENST00000397470|GPR18	MSMS	A375_MHC_IP_R2	2	435.2821350097656	3	434.896095	1301.66646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.015	1	96.765	96.265	97.265	0.75045								0	0	0	0.15583	1	36463	36463		1.9064	0.1641	1		+		15204	18331	11029	11115	14843	14843					0.02769039209715629
FMSALMSD	8	Unmodified	_FMSALMSD_					0	0	0			REV__ENST00000468413.5_1_2:201363803-201371754:-|nuORF	REV__ENST00000468413.5_1_2:201363803-201371754:-|nuORF	MSMS	A375_MHC_IP_R2	2	451.13604736328125	2	451.193339	900.372125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.08	1	96.83	96.33	97.33	0.75045								0	0	0	0.16876	1	36487	36487		26.341	16.158	1		+		15205	19934	11030	11116	14844	14844					-0.08204574279989174
FMSKGILDDSP	11	Unmodified	_FMSKGILDDSP_					0	0	0		ENST00000515664.5_1_4:175158565-175177261:-|nuORF;nc|ENSG00000164117|Q9NRD0-2|FBXO8;ENSG00000164117|ENST00000393674|FBXO8	ENST00000515664.5_1_4:175158565-175177261:-|nuORF	ENST00000515664.5_1_4:175158565-175177261:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	605.6436157226562	2	605.294639	1208.57472	-0.34506	-0.00020886	-1.3264	-0.00080288	-1.6715	-0.0010117	605.2935394319394	89.481	0.55824	89.481	89.272	89.83	0					16	10	2	0	0	0	0.92455	1	32942	32942		21.537	13.928	1	2229000			15206	6783	11031	11117	14845	14845					-0.02121972673739947
FMSSEENKDF	10	Unmodified	_FMSSEENKDF_					0	0	0		nc|ENSG00000106392|Q9NS00-2|C1GALT1;ENSG00000106392|ENST00000436587|C1GALT1	nc|ENSG00000106392|Q9NS00-2|C1GALT1	nc|ENSG00000106392|Q9NS00-2|C1GALT1	MULTI-MSMS	A375_MHC_IP_R1	1	617.6583862304688	2	617.258253	1232.50195	-0.39308	-0.00024263	0.21581	0.00013321	-0.17728	-0.00010943	617.2585548796063	64.556	0.65993	64.556	64.191	64.851	0					23	12	3	0	0	0	0.66308	1	23356	23356		16.149	1.3108	1	3437500			15207	2687	11032	11118	14846	14846					-0.10499726467151049
FMTKFRPVKR	10	Unmodified	_FMTKFRPVKR_					0	0	0			REV__nc|ENSG00000183833|Q7Z4T9-1|CFAP91	REV__nc|ENSG00000183833|Q7Z4T9-1|CFAP91	MULTI-MSMS	A375_MHC_IP_R1	1	655.781005859375	2	655.381717	1308.74888	-0.79059	-0.00051814	0.53277	0.00034917	-0.25781	-0.00016897	655.3819492016537	141.73	2.302	141.73	140.18	142.49	0					61	44	2	0	0	0	0.71944	1	54316	54316		3.5965	3.5965	1	1274300	+		15208	21785	11033	11119	14847	14847					0.10685697332883137
FMTKFRPVKR	10	Unmodified	_FMTKFRPVKR_					0	0	0			REV__nc|ENSG00000183833|Q7Z4T9-1|CFAP91	REV__nc|ENSG00000183833|Q7Z4T9-1|CFAP91	MULTI-MSMS	A375_MHC_IP_R2	2	655.7200317382812	2	655.381717	1308.74888	-0.67237	-0.00044066	-0.048111	-3.1531E-05	-0.72048	-0.00047219	655.3827373548427	137.54	2.0749	137.63	137.3	139.37	0.083969					72	40	3	0	0	0	0.72416	1	53938	53938		1.4819	0.15237	1	2350600	+		15209	21785	11033	11119	14848	14848					0.10685697332883137
FMVATFTFF	9	Unmodified	_FMVATFTFF_					0	0	0			REV__ENST00000564526.1_1_16:85009951-85010841:-|nuORF	REV__ENST00000564526.1_1_16:85009951-85010841:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	556.2103271484375	2	555.770071	1109.52559	-0.58268	-0.00032384	1.2802	0.00071148	0.69749	0.00038764	555.7704769066256	19.913	0.25404	19.913	19.776	20.03	0					6	4	2	0	0	0	0.6898	1	5026	5026		7.9102	0	1	618180	+		15210	19848	11034	11120	14849	14849					-0.024792161720142758
FNAEQLGSPV	10	Unmodified	_FNAEQLGSPV_					0	0	0			REV__tr|U7T6I0|U7T6I0_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00244PE=4SV=1	REV__tr|U7T6I0|U7T6I0_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00244PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	531.6661376953125	2	531.266739	1060.51892	-0.71274	-0.00037865	-0.1771	-9.4085E-05	-0.88983	-0.00047274	531.2666335858557	74.701	0.71078	75.438	75.111	75.822	0.73751					31	13	3	0	0	0	0.85226	1	28336	28336		20.454	20.454	1	7180400	+		15211	28862	11035	11121	14850	14850					-0.008914377990549838
FNDPNAKEM	9	Oxidation (M)	_FNDPNAKEM(Oxidation (M))_		FNDPNAKEM(1)		FNDPNAKEM(53)	0	0	1		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	A375_MHC_IP_R2	2	541.6338500976562	2	541.234581	1080.45461	-1.1704	-0.00063346	-0.21646	-0.00011716	-1.3869	-0.00075061	541.234615767683	20.91	0.40586	21.52	21.362	21.768	0.61029					12	7	2	0	0	0	0.084766	1	6568	6568		53.404	16.898	1	1073100			15212	1276	11036	11122	14851	14851		28			-0.08239960947503278
FNEIYDEDVN	10	Unmodified	_FNEIYDEDVN_					0	0	0		nc|ENSG00000151687|Q7Z5J8-2|ANKAR;ENSG00000151687|ENST00000684021|ANKAR	nc|ENSG00000151687|Q7Z5J8-2|ANKAR	nc|ENSG00000151687|Q7Z5J8-2|ANKAR	MSMS	A375_MHC_IP_R2	2	629.1909790039062	2	629.267133	1256.51971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.925	1	63.668	63.168	64.168	0.74263								0	0	0	0.15089	1	23856	23856		16.149	0.90062	1				15213	5919	11037	11123	14852	14852					-0.09828687940671443
FNETWENY	8	Unmodified	_FNETWENY_					0	0	0		ENSG00000132855|ENST00000371129|ANGPTL3	ENSG00000132855|ENST00000371129|ANGPTL3	ENSG00000132855|ENST00000371129|ANGPTL3	MSMS	A375_MHC_IP_R1	1	551.6640625	2	551.727446	1101.44034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.524	1	53.524	53.024	54.024	0								0	0	0	0.16876	1	19085	19085		7.9102	1.187	1				15214	4459	11038	11124	14853	14853					-0.10632290104149433
FNEWPAEA	8	Unmodified	_FNEWPAEA_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MSMS	A375_MHC_IP_R1	1	482.13226318359375	2	482.213975	962.413397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.701	1	70.701	70.201	71.201	0								0	0	0	0.16876	1	25673	25673		13.508	0.97634	1				15215	3248	11039	11125	14854	14854					-0.06931353924676387
FNFLSEDKY	9	Unmodified	_FNFLSEDKY_					0	0	0		ENST00000524817.5_1_11:9685687-9762009:+|nuORF;ENSG00000133789|ENST00000318950|SWAP70;ENSG00000023892|ENST00000316637|DEF6	ENST00000524817.5_1_11:9685687-9762009:+|nuORF	ENST00000524817.5_1_11:9685687-9762009:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	582.1741943359375	2	581.774396	1161.53424	-0.19356	-0.00011261	0.3033	0.00017645	0.10974	6.3845E-05	581.7742200247299	50.862	0.45564	50.862	50.613	51.068	0					14	8	2	0	0	0	0.71341	1	18059	18059		18.146	1.0335	1	2225000			15216	4530	11040	11126	14855	14855					-0.04006571001832526
FNKFILLHNKE	11	Unmodified	_FNKFILLHNKE_					0	0	0			REV__ENST00000278193.6_1_11:27516283-27516379:-|nuORF	REV__ENST00000278193.6_1_11:27516283-27516379:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	468.6507263183594	3	468.266233	1401.77687	-0.89198	-0.00041768	-0.1279	-5.9893E-05	-1.0199	-0.00047758	468.2669385424051	24.193	0.51049	24.837	24.499	25.009	0.64368					13	9	2	0	0	0	0.73647	1	7966	7966		1.1098	0.70149	1	1520500	+		15217	23308	11041	11127	14856	14856					0.09205298793995098
FNKGKIEFV	9	Unmodified	_FNKGKIEFV_					0	0	0			REV__tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1	REV__tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	361.2538757324219	3	361.206203	1080.59678	-0.14981	-5.4113E-05	2.3473	0.00084787	2.1975	0.00079376	361.5415791643856	45.983	0.3537	46.748	46.552	46.906	0.76519					9	6	2	0	0	0	0.63811	1	17192	17192		8.1555	1.0538	1	2316600	+		15218	28469	11042	11128	14857	14857					0.05970619856975645
FNKHVVDL	8	Unmodified	_FNKHVVDL_					0	0	0			REV__ENST00000485270.5_1_10:82033539-82034994:-|nuORF	REV__ENST00000485270.5_1_10:82033539-82034994:-|nuORF	MSMS	A375_MHC_IP_R2	2	486.167236328125	2	486.269084	970.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.29	1	115.98	115.48	116.48	0.68999								0	0	0	0.16876	1	43458	43458		19.439	1.2926	1		+		15219	19743	11043	11129	14858	14858					0.0371749113437545
FNKKRKFQ	8	Unmodified	_FNKKRKFQ_					0	0	0		ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	MSMS	A375_MHC_IP_R1	1	365.9366455078125	3	365.885576	1094.6349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.072	1	44.072	43.572	44.572	0								0	0	0	0.16876	1	15359	15359		6.7232	0.99131	1				15220	1718	11044	11130	14859	14859					0.09136550562334378
FNKPTNVLNA	10	Unmodified	_FNKPTNVLNA_					0	0	0		ENSG00000162771|ENST00000294829|GARIN4	ENSG00000162771|ENST00000294829|GARIN4	ENSG00000162771|ENST00000294829|GARIN4	MULTI-MSMS	A375_MHC_IP_R2	2	373.4803466796875	3	373.204862	1116.59276	0.37768	0.00014095	0.58194	0.00021718	0.95963	0.00035814	373.2050373436827	31.16	0.40723	31.879	31.618	32.026	0.71857					12	7	2	0	0	0	0.71455	1	10983	10983		5.7834	1.2546	1	1700500			15221	6592	11045	11131	14860	14860					0.03912530363299993
FNKPTNVLNA	10	Unmodified	_FNKPTNVLNA_					0	0	0		ENSG00000162771|ENST00000294829|GARIN4	ENSG00000162771|ENST00000294829|GARIN4	ENSG00000162771|ENST00000294829|GARIN4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	373.204862	1116.59276	0.37768	0.00014095	0.58194	0.00021718	0.95963	0.00035814	373.2050373436827	31.16	0.40723	31.879	31.618	32.026	0.71857	-0.022193	0.00032575	NaN	5.7834	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1700500			15222	6592	11045	11131							0.03912530363299993
FNKSVEYM	8	Unmodified	_FNKSVEYM_					0	0	0			REV__ENST00000473711.1_1_2:231090559-231102095:+|nuORF	REV__ENST00000473711.1_1_2:231090559-231102095:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	508.6874084472656	2	509.239135	1016.46372	-0.53379	-0.00027183	-3.0354	-0.0015457	-3.5692	-0.0018176	509.23754495761114	27.617	0.35366	27.617	27.381	27.735	0					8	6	2	0	0	0	0.95423	1	8304	8304		12.532	0	1	691400	+		15223	25153	11046	11132	14861	14861					-0.043855675911686376
FNNDRMKTT	9	Unmodified	_FNNDRMKTT_					0	0	0		ENST00000458725.5_1_13:50642253-50656006:-|nuORF	ENST00000458725.5_1_13:50642253-50656006:-|nuORF	ENST00000458725.5_1_13:50642253-50656006:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	375.9215087890625	3	376.181841	1125.52369	0.013717	5.1601E-06	0.7821	0.00029421	0.79582	0.00029937	376.1823407665539	26.383	0.60862	26.383	25.966	26.575	0					18	11	2	0	0	0	0.73363	1	7911	7911		15.248	6.5031	1	2914200			15224	12150	11047	11133	14862	14862					-0.034048769279252156
FNNGCRCEY	9	Unmodified	_FNNGCRCEY_					0	0	0			REV__ENSG00000172671|ENST00000344646|ZFAND4	REV__ENSG00000172671|ENST00000344646|ZFAND4	MSMS	A375_MHC_IP_R1	1	553.160888671875	2	553.213126	1104.4117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.662	1	89.662	89.162	90.162	0								0	0	0	0.15486	1	32939	32939		7.9102	0	1		+		15225	21162	11048	11134	14863	14863					-0.1363305427657906
FNNMSYWVRSI	11	Unmodified	_FNNMSYWVRSI_					0	0	0		nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1;nc|ENSG00000107263|Q13905-2|RAPGEF1	nc|ENSG00000107263|Q13905|RAPGEF1	nc|ENSG00000107263|Q13905|RAPGEF1	MULTI-SECPEP	A375_MHC_IP_R2	2	473.0086975097656	3	472.895812	1415.66561	-0.48284	-0.00022833	-0.42728	-0.00020206	-0.91012	-0.00043039	472.89567544662515	69.575	0.30545	70.309	70.183	70.488	0.73421					6	5	2	0	0	0	0.99847	1	26439	26439		2.8433	1.5136	1	934400			15226	2733	11049	11135	14864	14864					-0.025600839056096447
FNNMSYWVRSI	11	Unmodified	_FNNMSYWVRSI_					0	0	0		nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1;nc|ENSG00000107263|Q13905-2|RAPGEF1	nc|ENSG00000107263|Q13905|RAPGEF1	nc|ENSG00000107263|Q13905|RAPGEF1	MULTI-MATCH	A375_MHC_IP_R1	1		3	472.895812	1415.66561	-0.30376	-0.00014365	-0.465	-0.00021989	-0.76876	-0.00036354	473.2300497885892	70.399	0.25697	70.399	70.185	70.442	0	0.045055	-4.9741E-05	NaN	2.8433	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	454240			15227	2733	11049	11135							-0.025600839056096447
FNNSKPWFY	9	Unmodified	_FNNSKPWFY_					0	0	0			REV__OR10A5|p.S268F|1|0.36|ENSG00000166363|chr11:6846485-6846485|C/T|missense_variant	REV__OR10A5|p.S268F|1|0.36|ENSG00000166363|chr11:6846485-6846485|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	602.6853637695312	2	601.785099	1201.55564	-0.33571	-0.00020203	-4.0459	-0.0024348	-4.3816	-0.0026368	602.2851148042889	43.346	0.60733	44.119	43.826	44.433	0.7724					29	11	4	0	0	0	0.58047	1	16157	16157		15.847	1.2655	1	4711100	+		15228	27645	11050	11136	14865	14865					-0.03707141182462692
FNNSSHDPSY	10	Unmodified	_FNNSSHDPSY_					0	0	0			REV__nc|ENSG00000071564|P15923-2|TCF3	REV__nc|ENSG00000071564|P15923-2|TCF3	MULTI-MSMS	A375_MHC_IP_R1	1	585.1400756835938	2	584.238709	1166.46287	-0.26227	-0.00015323	-0.18178	-0.0001062	-0.44405	-0.00025943	584.2387336078837	83.466	1.0642	83.466	82.772	83.837	0					37	20	3	0	0	0	0.6502	1	30509	30509		17.113	0	1	6192200	+		15229	16589	11051	11137	14866	14866					-0.11370690706507958
FNNSSHDPSY	10	Unmodified	_FNNSSHDPSY_					0	0	0			REV__nc|ENSG00000071564|P15923-2|TCF3	REV__nc|ENSG00000071564|P15923-2|TCF3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	584.238709	1166.46287	-0.46207	-0.00026996	-0.66456	-0.00038826	-1.1266	-0.00065822	584.238230506454	82.835	0.60529	83.578	83.245	83.851	0.74255	0.056049	-0.00017027	NaN	17.113	33	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5354400	+		15230	16589	11051	11137							-0.11370690706507958
FNPRPYSI	8	Unmodified	_FNPRPYSI_					0	0	0			REV__nc|ENSG00000129422|Q9ULD2-5|MTUS1	REV__nc|ENSG00000129422|Q9ULD2-5|MTUS1	MULTI-MSMS	A375_MHC_IP_R2	2	497.192138671875	2	497.261259	992.507966	-0.43408	-0.00021585	-2.9672	-0.0014755	-3.4013	-0.0016913	497.256865505922	63.702	1.3208	64.442	63.734	65.054	0.74022					41	25	3	0	0	0	0.75322	1	24001	24001		19.439	4.8573	1	2161800	+		15231	18490	11052	11138	14867	14867					0.01141204617317726
FNQLDLPAY	9	Unmodified	_FNQLDLPAY_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	A375_MHC_IP_R1	1	540.6773071289062	2	540.771657	1079.52876	-0.56594	-0.00030604	-1.8959	-0.0010253	-2.4619	-0.0013313	541.2719634475067	70.546	0.30712	70.546	70.341	70.648	0					8	5	2	0	0	0	0.51106	1	25648	25648		19.257	1.1106	1	550430			15232	1846	11053	11139	14868	14868					-0.007822497936786021
FNQNPHFSRHR	11	Unmodified	_FNQNPHFSRHR_					0	0	0		ZNF610|p.L443F|1|0.3|ENSG00000167554|chr19:52366705-52366705|C/T|missense_variant	ZNF610|p.L443F|1|0.3|ENSG00000167554|chr19:52366705-52366705|C/T|missense_variant	ZNF610|p.L443F|1|0.3|ENSG00000167554|chr19:52366705-52366705|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	480.4720153808594	3	480.572831	1438.69666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.942	1	27.602	27.102	28.102	0.65992								0	0	0	0.16316	1	9154	9154		2.2527	0.79761	1				15233	30233	11054	11140	14869	14869					-0.005137497564874138
FNRKLESIS	9	Unmodified	_FNRKLESIS_					0	0	0			REV__EPB41L2|p.M656I|1|0.16|ENSG00000079819|chr6:130878179-130878179|C/T|missense_variant	REV__EPB41L2|p.M656I|1|0.16|ENSG00000079819|chr6:130878179-130878179|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	365.2525939941406	3	365.204862	1092.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.919	1	26.919	26.419	27.419	0								0	0	0	0.15273	1	8091	8091		12.175	4.2293	1		+		15234	16739	11055	11141	14870	14870					0.050165303632638825
FNRKLESIS	9	Unmodified	_FNRKLESIS_					0	0	0			REV__EPB41L2|p.M656I|1|0.16|ENSG00000079819|chr6:130878179-130878179|C/T|missense_variant	REV__EPB41L2|p.M656I|1|0.16|ENSG00000079819|chr6:130878179-130878179|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	365.25238037109375	3	365.204862	1092.59276	-0.37738	-0.00013782	0.37239	0.000136	-0.0049853	-1.8207E-06	365.2049410808639	26.239	0.30441	26.899	26.754	27.058	0.65992					7	5	2	0	0	0	0.51106	1	8880	8880		18.373	10.896	1	1246400	+		15235	16739	11055	11141	14871	14871					0.050165303632638825
FNRTVIIFN	9	Unmodified	_FNRTVIIFN_					0	0	0		SCN2A|p.S312I|1|0.27|ENSG00000136531|chr2:165310560-165310560|G/T|missense_variant	SCN2A|p.S312I|1|0.27|ENSG00000136531|chr2:165310560-165310560|G/T|missense_variant	SCN2A|p.S312I|1|0.27|ENSG00000136531|chr2:165310560-165310560|G/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	562.7162475585938	2	562.316566	1122.61858	-0.72328	-0.00040671	0.058671	3.2992E-05	-0.66461	-0.00037372	562.3163847128579	65.561	0.66108	66.299	65.968	66.629	0.73811					25	12	3	0	0	0	0.37663	1	24849	24849		29.841	0	1	4174900			15236	29116	11056	11142	14872	14872					0.06217424605551969
FNSDIQKL	8	Unmodified	_FNSDIQKL_					0	0	0		nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD	nc|ENSG00000198947|P11532-4|DMD	nc|ENSG00000198947|P11532-4|DMD	MULTI-SECPEP	A375_MHC_IP_R1	1	482.1561584472656	2	482.758549	963.502546	-0.27786	-0.00013414	1.4335	0.00069202	1.1556	0.00055788	482.75958859724784	55.816	0.25597	55.816	55.635	55.891	0					7	4	2	0	0	0	0.68831	1	19978	19978		27.629	0	1	927460			15237	9381	11057	11143	14873	14873					0.01933481034848228
FNSQILFSF	9	Unmodified	_FNSQILFSF_					0	0	0			REV__ENST00000509162.1_1_3:133368499-133368748:-|nuORF	REV__ENST00000509162.1_1_3:133368499-133368748:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	552.6575317382812	2	551.782025	1101.5495	-0.49787	-0.00027471	0.58458	0.00032256	0.086713	4.7847E-05	551.7822959329067	102.52	0.75754	102.52	102.2	102.96	0					25	14	3	0	0	0	0.51106	1	37717	37717		19.257	4.4187	1	2071400	+		15238	25592	11058	11144	14874	14874					0.0027834058601001743
FNSSYNME	8	Unmodified	_FNSSYNME_					0	0	0			REV__ZNRF3|p.S671F|1|0.14|ENSG00000183579|chr22:29050193-29050193|C/T|missense_variant	REV__ZNRF3|p.S671F|1|0.14|ENSG00000183579|chr22:29050193-29050193|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	496.1480712890625	2	496.194925	990.375297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.364	1	48.125	47.625	48.625	0.76128								0	0	0	0.16876	1	17758	17758		12.532	0	1		+		15239	29058	11059	11145	14875	14875					-0.12027607901632109
FNTKENDL	8	Unmodified	_FNTKENDL_					0	0	0			REV__ENSG00000124831|ENST00000308482|LRRFIP1	REV__ENSG00000124831|ENST00000308482|LRRFIP1	MULTI-MSMS	A375_MHC_IP_R2	2	490.658203125	2	490.737814	979.461075	-0.33914	-0.00016643	0.036357	1.7842E-05	-0.30278	-0.00014859	490.7377577013841	43.825	0.55415	44.594	44.278	44.833	0.7691					28	10	3	0	0	0	0.74466	1	16278	16278		21.747	1.293	1	4086400	+		15240	18327	11060	11146	14876	14876					-0.02947699724472841
FNTYYFPLWW	10	Unmodified	_FNTYYFPLWW_					0	0	0		ENSG00000186889|ENST00000335390|TMEM17;ENST00000479763.5_1_2:62729532-62738946:-|nuORF;ENST00000494919.1_1_2:62729532-62733264:-|nuORF	ENSG00000186889|ENST00000335390|TMEM17	ENSG00000186889|ENST00000335390|TMEM17	MSMS	A375_MHC_IP_R2	2	479.4571228027344	3	479.560646	1435.66011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.968	1	22.588	22.088	23.088	0.61932								0	0	0	0.15637	1	6952	6952		0.15932	0.036457	1				15241	8788	11061	11147	14877	14877					-0.0402943942578986
FNVKEEANAA	10	Unmodified	_FNVKEEANAA_					0	0	0		ENSG00000110060|ENST00000227474|PUS3	ENSG00000110060|ENST00000227474|PUS3	ENSG00000110060|ENST00000227474|PUS3	MULTI-MSMS	A375_MHC_IP_R1	1	546.7081909179688	2	546.769645	1091.52474	-0.58403	-0.00031933	0.6941	0.00037951	0.11007	6.018E-05	546.7702429598576	42.057	1.0669	42.057	41.571	42.638	0					34	20	3	0	0	0	0.59108	1	14669	14669		21.537	5.3879	1	5904800			15242	2914	11062	11148	14878	14878					-0.017363392873676275
FNVKEEANAA	10	Unmodified	_FNVKEEANAA_					0	0	0		ENSG00000110060|ENST00000227474|PUS3	ENSG00000110060|ENST00000227474|PUS3	ENSG00000110060|ENST00000227474|PUS3	MULTI-MSMS	A375_MHC_IP_R2	2	546.7079467773438	2	546.769645	1091.52474	-1.0122	-0.00055346	1.216	0.00066488	0.20377	0.00011142	546.7703087558634	41.264	0.86317	42.038	41.692	42.555	0.77451					32	16	3	0	0	0	0.66308	1	15408	15408		16.149	0.90062	1	4795000			15243	2914	11062	11148	14879	14879					-0.017363392873676275
FNYKRRVWRYH	11	Unmodified	_FNYKRRVWRYH_					0	0	0			REV__nc|ENSG00000196557|O95180-2|CACNA1H	REV__nc|ENSG00000196557|O95180-2|CACNA1H	MULTI-MSMS	A375_MHC_IP_R1	1	813.0210571289062	2	812.934025	1623.8535	-0.55959	-0.00045491	-2.2784	-0.0018522	-2.838	-0.0023071	813.434047425497	84.115	0.25098	84.115	84.041	84.292	0					7	4	2	0	0	0	0.73902	1	30776	30776		0.30703	0.03801	1	1531300	+		15244	27437	11063	11149	14880	14880					0.06652535133821402
FPAAATSANL	10	Unmodified	_FPAAATSANL_					0	0	0		ENST00000496494.5_1_8:72111577-72234167:-|nuORF;nc|ENSG00000104313|Q99502-3|EYA1;nc|ENSG00000104313|Q99502-2|EYA1;ENSG00000104313|ENST00000340726|EYA1	ENST00000496494.5_1_8:72111577-72234167:-|nuORF	ENST00000496494.5_1_8:72111577-72234167:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	482.6521301269531	2	481.750724	961.486896	-0.21282	-0.00010253	-0.40928	-0.00019717	-0.6221	-0.0002997	481.75054652274804	82.109	0.76167	82.109	81.809	82.571	0					43	14	4	0	0	0	0.21466	1	30027	30027		47.749	11.242	1	5637400			15245	2495	11064	11150	14881	14881					0.0046119451779986775
FPCPVVLL	8	Unmodified	_FPCPVVLL_					0	0	0		ENST00000530908.5_1_21:37444388-37445177:+|nuORF	ENST00000530908.5_1_21:37444388-37445177:+|nuORF	ENST00000530908.5_1_21:37444388-37445177:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	444.6567077636719	2	444.2566	886.498647	-0.3321	-0.00014754	0.74062	0.00032903	0.40852	0.00018149	444.25699297811735	95.691	1.7249	96.441	95.99	97.715	0.75044					57	33	2	0	0	0	0.77839	1	36405	36405		0.79363	0.79363	1	1354700			15246	13158	11065	11151	14882	14882					0.05085720007446071
FPCPVVLL	8	Unmodified	_FPCPVVLL_					0	0	0		ENST00000530908.5_1_21:37444388-37445177:+|nuORF	ENST00000530908.5_1_21:37444388-37445177:+|nuORF	ENST00000530908.5_1_21:37444388-37445177:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	444.2566	886.498647	-0.3321	-0.00014754	0.74062	0.00032903	0.40852	0.00018149	444.25699297811735	95.691	1.7249	96.441	95.99	97.715	0.75044	0.070814	0.00014085	NaN	0.79363	57	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1354700			15247	13158	11065	11151							0.05085720007446071
FPDIWVSLEE	10	Unmodified	_FPDIWVSLEE_					0	0	0			REV__TOB2|p.F286Lfs*42|1|0.96|ENSG00000183864|chr22:41436488-41436488|A/-|frameshift_variant	REV__TOB2|p.F286Lfs*42|1|0.96|ENSG00000183864|chr22:41436488-41436488|A/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	617.8366088867188	2	617.803154	1233.59175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.849	1	91.849	91.349	92.349	0								0	0	0	0.15435	1	33749	33749		6.7232	0	1		+		15248	28150	11066	11152	14883	14883					-0.015697287962893824
FPDLRPQNY	9	Unmodified	_FPDLRPQNY_					0	0	0			REV__ADAM2|p.H372Y|1|0.36|ENSG00000104755|chr8:39769490-39769490|G/A|missense_variant	REV__ADAM2|p.H372Y|1|0.36|ENSG00000104755|chr8:39769490-39769490|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	575.2005004882812	2	575.288005	1148.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.641	1	38.415	37.915	38.915	0.77451								0	0	0	0.14767	1	13788	13788		25.399	1.3787	1		+		15249	15313	11067	11153	14884	14884					-0.006880426708221421
FPDRLVGY	8	Unmodified	_FPDRLVGY_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	A375_MHC_IP_R1	1	483.6925964355469	2	483.75581	965.497067	0.17157	8.2997E-05	-0.063009	-3.0481E-05	0.10856	5.2516E-05	483.75589954744305	69.57	0.86131	69.57	69.173	70.034	0					29	16	2	0	0	0	0.74543	1	25357	25357		21.537	0.66577	1	3493100			15250	5898	11068	11154	14885	14885					0.012938022430375895
FPDRLVGY	8	Unmodified	_FPDRLVGY_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	A375_MHC_IP_R2	2	483.6922607421875	2	483.75581	965.497067	-0.48423	-0.00023425	0.24471	0.00011838	-0.23952	-0.00011587	483.7560766625212	68.916	1.013	69.651	69.221	70.234	0.73511					38	19	3	0	0	0	0.7011	2	26095	26046;26095		34.402	12.655	1	4068300			15251	5898	11068	11154	14886;14887	14887					0.012938022430375895
FPDVQFNRC	9	Unmodified	_FPDVQFNRC_					0	0	0		nc|ENSG00000119608|Q3B8N5|PROX2;ENSG00000119608|ENST00000556489|PROX2	nc|ENSG00000119608|Q3B8N5|PROX2	nc|ENSG00000119608|Q3B8N5|PROX2	MULTI-MSMS	A375_MHC_IP_R1	1	1126.703369140625	1	1125.51459	1124.50731	0.088109	9.9168E-05	-1.8416	-0.0020728	-1.7535	-0.0019736	1125.5104121083161	103.81	1.2726	103.81	103.17	104.44	0					39	24	3	0	0	0	0.69674	1	38278	38278		7.2892	2.5332	1	6513300			15252	3604	11069	11155	14888	14888					-0.04995958094013986
FPDWALFW	8	Unmodified	_FPDWALFW_					0	0	0			REV__ENSG00000127831|ENST00000248444|VIL1	REV__ENSG00000127831|ENST00000248444|VIL1	MSMS	A375_MHC_IP_R2	2	541.2112426757812	2	541.260728	1080.5069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.745	1	51.499	50.999	51.999	0.75406								0	0	0	0.16876	1	19086	19086		14.582	1.0738	1		+		15253	18431	11070	11156	14889	14889					-0.030130097515893794
FPEEIHTSI	9	Unmodified	_FPEEIHTSI_					0	0	0		ABCC6|p.G741E|1|0.56|ENSG00000091262|chr16:16182437-16182437|C/T|missense_variant	ABCC6|p.G741E|1|0.56|ENSG00000091262|chr16:16182437-16182437|C/T|missense_variant	ABCC6|p.G741E|1|0.56|ENSG00000091262|chr16:16182437-16182437|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	537.7048950195312	2	536.769114	1071.52368	-0.73739	-0.00039581	0.18511	9.936E-05	-0.55228	-0.00029645	536.769148863683	91.591	0.70735	91.591	91.199	91.906	0					27	13	3	0	0	0	0.55818	1	33707	33707		16.942	5.302	1	4737200			15254	13	11071	11157	14890	14890					-0.00922553656278069
FPEEKQEWWWL	11	Unmodified	_FPEEKQEWWWL_					0	0	0		ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	MULTI-MSMS	A375_MHC_IP_R2	2	789.7734375	2	789.374809	1576.73507	-0.88583	-0.00069926	0.41646	0.00032874	-0.46938	-0.00037051	789.3749124586991	89.94	0.61354	90.672	90.391	91.004	0.7318					27	11	3	0	0	0	0.73694	1	34225	34225		2.2828	0	1	3372400			15255	1091	11072	11158	14891	14891					-0.03023301685198021
FPEGHERIK	9	Unmodified	_FPEGHERIK_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	MULTI-SECPEP	A375_MHC_IP_R2	2	372.29608154296875	3	371.533091	1111.57744	0.26745	9.9367E-05	-1.2114	-0.00045009	-0.94399	-0.00035072	371.532543133459	30.133	0.40536	30.852	30.608	31.013	0.71857					11	7	2	0	0	0	0.78798	1	10617	10617		4.5289	2.2461	1	3267200	+		15256	18329	11073	11159	14892	14892					0.026116635660855536
FPEGHERIK	9	Unmodified	_FPEGHERIK_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	MULTI-MATCH	A375_MHC_IP_R1	1		3	371.533091	1111.57744	0.094353	3.5055E-05	-1.4552	-0.00054064	-1.3608	-0.00050558	371.5324655772432	30.854	0.4053	30.854	30.653	31.059	0	0.0012834	-0.00010553	NaN	4.5289	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3095900	+		15257	18329	11073	11159							0.026116635660855536
FPEKGYSF	8	Unmodified	_FPEKGYSF_					0	0	0		ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	487.180419921875	2	487.734543	973.454533	-0.81398	-0.00039701	0.15035	7.3331E-05	-0.66363	-0.00032368	487.7347461707876	54.477	1.4258	55.228	54.404	55.83	0.75075					43	27	2	0	0	0	0.88903	1	20621	20621		24.021	3.5669	1	1154600			15258	5935	11074	11160	14893	14893					-0.03325592885187234
FPFIDLIFKPL	11	Unmodified	_FPFIDLIFKPL_					0	0	0		tr|U7SV14|U7SV14_FUSNUAlpha/betahydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01471PE=4SV=1	tr|U7SV14|U7SV14_FUSNUAlpha/betahydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01471PE=4SV=1	tr|U7SV14|U7SV14_FUSNUAlpha/betahydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01471PE=4SV=1	MSMS	A375_MHC_IP_R2	2	450.95635986328125	3	450.600442	1348.7795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.985	1	19.588	19.088	20.088	0.60308								0	0	0	0.16336	1	5739	5739		1.2148	0.25256	1				15259	29783	11075	11161	14894	14894					0.11905754198960494
FPFPGTHRHEL	11	Unmodified	_FPFPGTHRHEL_					0	0	0		ENST00000360351.8_2_2:210444183-210444447:+|nuORF	ENST00000360351.8_2_2:210444183-210444447:+|nuORF	ENST00000360351.8_2_2:210444183-210444447:+|nuORF	MSMS	A375_MHC_IP_R1	1	446.6332092285156	3	446.563161	1336.66765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.95	1	27.95	27.45	28.45	0								0	0	0	0.16302	1	8550	8550		1.2148	0	1				15260	11027	11076	11162	14895	14895					0.012787128945319637
FPFSCMRLCKP	11	Unmodified	_FPFSCMRLCKP_					0	0	0			REV__ENSG00000134389|ENST00000256785|CFHR5	REV__ENSG00000134389|ENST00000256785|CFHR5	MSMS	A375_MHC_IP_R1	1	665.1795043945312	2	664.819247	1327.62394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.2	1	120.2	119.7	120.7	0								0	0	0	0.16191	1	44504	44504		8.7454	0	1		+		15261	18776	11077	11163	14896	14896					-0.02676679190130926
FPFSYLYSEM	10	Unmodified	_FPFSYLYSEM_					0	0	0		ENST00000310389.5_1_5:175799134-175799248:+|nuORF	ENST00000310389.5_1_5:175799134-175799248:+|nuORF	ENST00000310389.5_1_5:175799134-175799248:+|nuORF	MSMS	A375_MHC_IP_R2	2	642.0902709960938	2	642.286282	1282.55801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.811	1	86.547	86.047	87.047	0.73601								0	0	0	0.14983	1	32629	32629		18.146	1.0335	1				15262	10619	11078	11164	14897	14897					-0.07196473559702099
FPFVLETVP	9	Unmodified	_FPFVLETVP_					0	0	0		ENST00000471540.5_1_21:46683912-46684008:-|nuORF	ENST00000471540.5_1_21:46683912-46684008:-|nuORF	ENST00000471540.5_1_21:46683912-46684008:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	524.2435913085938	2	524.789318	1047.56408	-0.32095	-0.00016843	-1.3919	-0.00073046	-1.7129	-0.00089889	525.2892156882125	93.986	0.91164	94.731	94.262	95.173	0.74473					43	17	4	0	0	0	0.74651	1	35651	35651		2.0598	0	1	2666600			15263	12355	11079	11165	14898	14898					0.04220412734139245
FPFVLRMFV	9	Unmodified	_FPFVLRMFV_					0	0	0			REV__ENST00000329517.10_1_22:19776048-19776162:-|nuORF	REV__ENST00000329517.10_1_22:19776048-19776162:-|nuORF	MSMS	A375_MHC_IP_R1	1	578.7205200195312	2	578.322805	1154.63106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126	1	126	125.5	126.5	0								0	0	0	0.15486	1	48057	48057		8.5933	0	1		+		15264	23614	11080	11166	14899	14899					0.05992744744230549
FPGEGKVK	8	Unmodified	_FPGEGKVK_					0	0	0		ENSG00000143850|ENST00000272203|PLEKHA6	ENSG00000143850|ENST00000272203|PLEKHA6	ENSG00000143850|ENST00000272203|PLEKHA6	MSMS	A375_MHC_IP_R1	1	431.2882080078125	2	431.245078	860.475603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.75	1	57.75	57.25	58.25	0								0	0	0	0.16876	1	20728	20728		6.7232	0	1				15265	5442	11081	11167	14900	14900					0.039784172143299656
FPGFGTVV	8	Unmodified	_FPGFGTVV_					0	0	0			REV__ENSG00000130517|ENST00000269919|PGPEP1	REV__ENSG00000130517|ENST00000269919|PGPEP1	MULTI-MSMS	A375_MHC_IP_R1	1	412.620849609375	2	412.221072	822.42759	0.13642	5.6237E-05	-0.07953	-3.2784E-05	0.056893	2.3452E-05	412.22094655544674	61.357	0.51022	61.357	61.075	61.585	0					21	9	3	0	0	0	0.16565	1	22099	22099		78.445	18.65	1	5315500	+		15266	18545	11082	11168	14901	14901					0.00927343294279126
FPHKELRAR	9	Unmodified	_FPHKELRAR_					0	0	0		ENST00000554614.2_1_14:73711044-73711323:-|nuORF	ENST00000554614.2_1_14:73711044-73711323:-|nuORF	ENST00000554614.2_1_14:73711044-73711323:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	385.9889221191406	3	385.22448	1152.65161	0.13236	5.099E-05	-2.1368	-0.00082314	-2.0044	-0.00077215	385.22353751067095	25.635	0.55863	25.635	25.408	25.966	0					16	10	2	0	0	0	0.75519	1	7497	7497		10.151	5.2536	1	2283600			15267	13424	11083	11169	14902	14902					0.08139051448256396
FPHPVHAGP	9	Unmodified	_FPHPVHAGP_					0	0	0			REV__FOXD4L1|p.L214V|1|0.38|ENSG00000184492|chr2:113499896-113499896|C/G|missense_variant	REV__FOXD4L1|p.L214V|1|0.38|ENSG00000184492|chr2:113499896-113499896|C/G|missense_variant	MSMS	A375_MHC_IP_R1	1	479.6777648925781	2	479.748319	957.482085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.71	1	109.71	109.21	110.21	0								0	0	0	0.15486	1	40236	40236		5.2307	0	1		+		15268	26645	11084	11170	14903	14903					0.001643551657025455
FPIVVWTW	8	Unmodified	_FPIVVWTW_					0	0	0		SOAT1|p.T183I|1|0.21|ENSG00000057252|chr1:179341078-179341078|C/T|missense_variant	SOAT1|p.T183I|1|0.21|ENSG00000057252|chr1:179341078-179341078|C/T|missense_variant	SOAT1|p.T183I|1|0.21|ENSG00000057252|chr1:179341078-179341078|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6262817382812	2	524.286746	1046.55894	-0.45398	-0.00023802	-2.9633	-0.0015536	-3.4173	-0.0017916	524.284748638733	98.514	0.35841	98.514	98.3	98.659	0					12	6	3	0	0	0	0.88799	1	36174	36174		20.871	0	1	1203900			15269	29216	11085	11171	14904	14904					0.03752153662185265
FPKLQETYK	9	Unmodified	_FPKLQETYK_					0	0	0			REV__nc|ENSG00000076716|O75487-2|GPC4	REV__nc|ENSG00000076716|O75487-2|GPC4	MULTI-MSMS	A375_MHC_IP_R1	1	385.6133117675781	3	385.213246	1152.61791	0.33393	0.00012863	-0.27547	-0.00010612	0.058452	2.2516E-05	385.21307016591055	54.619	0.50886	54.619	54.364	54.873	0					16	9	3	0	0	0	0.72761	1	19511	19511		4.5289	2.0304	1	2174900	+		15270	16680	11086	11172	14905	14905					0.04770585165852026
FPKTHSDVSSE	11	Unmodified	_FPKTHSDVSSE_					0	0	0		nc|ENSG00000113580|P04150-7|NR3C1;nc|ENSG00000113580|P04150-5|NR3C1;nc|ENSG00000113580|P04150-13|NR3C1;nc|ENSG00000113580|P04150-12|NR3C1;nc|ENSG00000113580|P04150-11|NR3C1;nc|ENSG00000113580|P04150-9|NR3C1;NR3C1|p.L741Ffs*3|1|0.51|ENSG00000113580|chr5:143282000-143282001|-/A|frameshift_variant;nc|ENSG00000113580|P04150-2|NR3C1;nc|ENSG00000113580|P04150-6|NR3C1;nc|ENSG00000113580|P04150-8|NR3C1;nc|ENSG00000113580|P04150-10|NR3C1;ENSG00000113580|ENST00000394464|NR3C1;nc|ENSG00000113580|P04150-3|NR3C1	nc|ENSG00000113580|P04150-7|NR3C1	nc|ENSG00000113580|P04150-7|NR3C1	MULTI-MSMS	A375_MHC_IP_R1	1	618.192138671875	2	617.290942	1232.56733	-0.35176	-0.00021714	-0.37771	-0.00023315	-0.72946	-0.00045029	617.2905368652916	75.565	0.80581	75.565	75.16	75.966	0					35	14	4	0	0	0	0.73078	1	27504	27504		8.1555	0	1	8851900			15271	3162	11087	11173	14906	14906					-0.03964988949792314
FPLVFNARMV	10	Unmodified	_FPLVFNARMV_					0	0	0		ENST00000463938.5_1_1:48878802-48937680:-|nuORF;nc|ENSG00000132122|Q9NWH7-2|SPATA6;ENSG00000132122|ENST00000371847|SPATA6	ENST00000463938.5_1_1:48878802-48937680:-|nuORF	ENST00000463938.5_1_1:48878802-48937680:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	398.6012268066406	3	398.554838	1192.64269	0.24262	9.6696E-05	-0.43143	-0.00017195	-0.18881	-7.525E-05	398.5546536265103	49.276	0.96457	49.276	48.983	49.947	0					31	18	2	0	0	0	0.71245	1	17527	17527		3.5871	0.26742	1	1556600			15272	4373	11088	11174	14907	14907					0.05406941767546414
FPNIMLQPD	9	Unmodified	_FPNIMLQPD_					0	0	0			REV__nc|ENSG00000091656|Q86UP3|ZFHX4	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-MSMS	A375_MHC_IP_R2	2	537.704345703125	2	537.76806	1073.52157	-0.89857	-0.00048322	-1.4795	-0.00079562	-2.3781	-0.0012788	537.7674965014966	98.076	0.61229	98.835	98.589	99.201	0.75977					16	11	2	0	0	0	0.64808	1	37277	37277		11.64	0	1	1227300	+		15273	16955	11089	11175	14908	14908					-0.01225305665752785
FPNLKGAT	8	Unmodified	_FPNLKGAT_					0	0	0			REV__tr|U7SW05|U7SW05_FUSNULipopolysaccharideexportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01409PE=4SV=1	REV__tr|U7SW05|U7SW05_FUSNULipopolysaccharideexportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01409PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	424.6370544433594	2	424.237253	846.459953	-0.20973	-8.8977E-05	0.45815	0.00019436	0.24841	0.00010538	424.23736728236287	65.358	0.61179	65.358	65.105	65.717	0					28	11	4	0	0	0	0.92636	1	23669	23669		16.942	4.4107	1	2767400	+		15274	28599	11090	11176	14909	14909					0.030581306972862876
FPNNQSWNSS	10	Unmodified	_FPNNQSWNSS_					0	0	0		PNRC2|p.S105Kfs*16|1|0.18|ENSG00000189266|chr1:23961768-23961769|-/A|frameshift_variant;nc|ENSG00000189266|Q9NPJ4-2|PNRC2;ENSG00000189266|ENST00000334351|PNRC2	PNRC2|p.S105Kfs*16|1|0.18|ENSG00000189266|chr1:23961768-23961769|-/A|frameshift_variant	PNRC2|p.S105Kfs*16|1|0.18|ENSG00000189266|chr1:23961768-23961769|-/A|frameshift_variant	MSMS	A375_MHC_IP_R1	1	590.8599853515625	2	590.754527	1179.4945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.05	1	100.05	99.549	100.55	0								0	0	0	0.15435	1	36764	36764		6.7232	0	1				15275	8975	11091	11177	14910	14910					-0.08806697952581999
FPPCPPGPL	9	Unmodified	_FPPCPPGPL_					0	0	0		CPSF6|p.R326C|1|0.16|ENSG00000111605|chr12:69258871-69258871|C/T|missense_variant	CPSF6|p.R326C|1|0.16|ENSG00000111605|chr12:69258871-69258871|C/T|missense_variant	CPSF6|p.R326C|1|0.16|ENSG00000111605|chr12:69258871-69258871|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	462.6813659667969	2	462.736031	923.45751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.548	1	56.548	56.048	57.048	0								0	0	0	0.15427	1	20260	20260		14.582	2.9414	1				15276	652	11092	11178	14911	14911					-0.007280410320277042
FPPGGRRNKL	10	Unmodified	_FPPGGRRNKL_					0	0	0			REV__ENST00000578430.1_1_17:56083680-56084618:-|nuORF	REV__ENST00000578430.1_1_17:56083680-56084618:-|nuORF	MSMS	A375_MHC_IP_R2	2	571.3387451171875	2	571.333082	1140.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.5	1	129.74	129.24	130.24	0.23946								0	0	0	0.15283	1	50894	50894		11.64	0.81637	1		+		15277	18938	11093	11179	14912	14912					0.08691051448272447
FPPMPQPRCRA	11	Unmodified	_FPPMPQPRCRA_					0	0	0		KLHL11|p.L644F|1|0.34|ENSG00000178502|chr17:41853937-41853937|G/A|missense_variant	KLHL11|p.L644F|1|0.34|ENSG00000178502|chr17:41853937-41853937|G/A|missense_variant	KLHL11|p.L644F|1|0.34|ENSG00000178502|chr17:41853937-41853937|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	433.9189453125	3	433.886482	1298.63762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.468	1	33.205	32.705	33.705	0.73692								0	0	0	0.16051	1	11560	11560		7.4771	2.7611	1				15278	14226	11094	11180	14913	14913					0.0002431463333323336
FPPVMVPP	8	Unmodified	_FPPVMVPP_					0	0	0		ENST00000513298.5_1_5:145838810-145849312:+|nuORF;ENST00000507175.5_1_5:145826912-145859658:+|nuORF;nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENSG00000113649|ENST00000679501|TCERG1	ENST00000513298.5_1_5:145838810-145849312:+|nuORF;nc|ENSG00000113649|O14776-2|TCERG1	nc|ENSG00000113649|O14776-2|TCERG1	MULTI-MSMS	A375_MHC_IP_R1	1	442.6407165527344	2	442.24095	882.467346	0.1408	6.2267E-05	0.016703	7.3868E-06	0.1575	6.9653E-05	442.2408523056226	107.99	4.6855	107.99	106.27	110.95	0					140	91	2	0	0	0	0.77781	1	39261	39261		2.8892	0	1	1916800			15279	3172;12927	11095	11181	14914	14914					0.021411469733493504
FPQELHVT	8	Unmodified	_FPQELHVT_					0	0	0		ENST00000285599.7_1_4:6623008-6623437:+|nuORF	ENST00000285599.7_1_4:6623008-6623437:+|nuORF	ENST00000285599.7_1_4:6623008-6623437:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	486.17291259765625	2	485.753267	969.491981	-0.26405	-0.00012827	0.057399	2.7882E-05	-0.20666	-0.00010038	485.75324081282423	60.694	1.0175	60.694	59.905	60.922	0					21	19	2	0	0	0	0.73946	1	21755	21755		23.148	5.0134	1	1362400			15280	10446	11096	11182	14915	14915					0.006014983804220719
FPQELHVT	8	Unmodified	_FPQELHVT_					0	0	0		ENST00000285599.7_1_4:6623008-6623437:+|nuORF	ENST00000285599.7_1_4:6623008-6623437:+|nuORF	ENST00000285599.7_1_4:6623008-6623437:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	486.1728820800781	2	485.753267	969.491981	-0.96664	-0.00046955	0.19754	9.5955E-05	-0.7691	-0.00037359	485.75325214589213	59.729	0.65589	60.476	60.148	60.804	0.74714					20	12	2	0	0	0	0.73946	1	22514	22514		23.148	5.0134	1	2134400			15281	10446	11096	11182	14916	14916					0.006014983804220719
FPQHWIQAKHL	11	Unmodified	_FPQHWIQAKHL_					0	0	0		ENST00000354366.7_1_14:90741326-90741632:-|nuORF	ENST00000354366.7_1_14:90741326-90741632:-|nuORF	ENST00000354366.7_1_14:90741326-90741632:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	469.3218688964844	3	468.922689	1403.74624	-0.36987	-0.00017344	-1.158	-0.00054302	-1.5279	-0.00071646	468.9221400440793	89.79	0.45471	89.79	89.476	89.931	0					14	8	2	0	0	0	0.73612	1	33035	33035		3.0723	0.22898	1	1060000			15282	10938	11097	11183	14917	14917					0.060515651996183806
FPQHWIQAKHL	11	Unmodified	_FPQHWIQAKHL_					0	0	0		ENST00000354366.7_1_14:90741326-90741632:-|nuORF	ENST00000354366.7_1_14:90741326-90741632:-|nuORF	ENST00000354366.7_1_14:90741326-90741632:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	468.922689	1403.74624	-0.54001	-0.00025322	-1.6254	-0.00076219	-2.1654	-0.0010154	468.92201972233175	88.945	0.25333	89.676	89.533	89.786	0.7318	-0.056594	-0.00040284	NaN	3.0723	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	662550			15283	10938	11097	11183							0.060515651996183806
FPRMLMKLV	9	Unmodified	_FPRMLMKLV_					0	0	0		nc|ENSG00000131408|P55055-2|NR1H2;nc|ENSG00000025434|Q13133-2|NR1H3;nc|ENSG00000025434|Q13133-3|NR1H3;ENSG00000025434|ENST00000441012|NR1H3;ENSG00000131408|ENST00000253727|NR1H2	nc|ENSG00000131408|P55055-2|NR1H2	nc|ENSG00000131408|P55055-2|NR1H2	MSMS	A375_MHC_IP_R2	2	378.9549255371094	3	378.889052	1133.64533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.158	1	40.933	40.433	41.433	0.77451								0	0	0	0.15486	1	14860	14860		8.7454	0.58988	1				15284	1088	11098	11184	14918	14918					0.08385073900899442
FPRMQKHIL	9	Unmodified	_FPRMQKHIL_					0	0	0			REV__nc|ENSG00000154760|Q68D06-2|SLFN13	REV__nc|ENSG00000154760|Q68D06-2|SLFN13	MULTI-SECPEP	A375_MHC_IP_R2	2	389.9328308105469	3	390.558583	1168.65392	-0.75075	-0.00029321	1.8395	0.00071842	1.0887	0.0004252	390.55929732855054	36.818	0.20317	37.589	37.513	37.716	0.7709					5	3	2	0	0	0	0.78351	1	13449	13449		5.2969	5.2969	1	436200	+		15285	19895	11099	11185	14919	14919					0.07633763861713305
FPRQVAVPGR	10	Unmodified	_FPRQVAVPGR_					0	0	0		ENST00000527348.1_1_11:65770323-65770707:+|nuORF;ENST00000530204.1_1_11:65770323-65770533:+|nuORF	ENST00000527348.1_1_11:65770323-65770707:+|nuORF	ENST00000527348.1_1_11:65770323-65770707:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	376.621337890625	3	376.220847	1125.64071	0.38881	0.00014628	0.9536	0.00035876	1.3424	0.00050504	376.2210811016501	47.637	0.40815	48.398	48.123	48.532	0.76128					17	7	3	0	0	0	0.71619	1	17856	17856		5.0475	0.51865	1	4581400			15286	13097	11100	11186	14920	14920					0.08291649073998997
FPRRWKELKHF	11	Unmodified	_FPRRWKELKHF_					0	0	0			REV__ENSG00000101638|ENST00000315087|ST8SIA5	REV__ENSG00000101638|ENST00000315087|ST8SIA5	MULTI-SECPEP	A375_MHC_IP_R2	2	771.928955078125	2	772.43587	1542.85719	-0.80883	-0.00062477	2.5515	0.0019708	1.7426	0.0013461	772.4373676826158	135.28	0.35789	135.42	135.2	135.56	0.13901					9	6	2	0	0	0	1.0014	1	53156	53156		0.30703	0.03801	1	1037600	+		15287	17179	11101	11187	14921	14921					0.10747204907670493
FPRRWKELKHF	11	Unmodified	_FPRRWKELKHF_					0	0	0			REV__ENSG00000101638|ENST00000315087|ST8SIA5	REV__ENSG00000101638|ENST00000315087|ST8SIA5	MULTI-MATCH	A375_MHC_IP_R1	1		2	772.43587	1542.85719	-0.75621	-0.00058413	3.0754	0.0023756	2.3192	0.0017914	772.9397823857665	135.21	0.50789	135.21	135.08	135.59	0	-0.10485	0.0002635	NaN	0.30703	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1087000	+		15288	17179	11101	11187							0.10747204907670493
FPRVRSWRGP	10	Unmodified	_FPRVRSWRGP_					0	0	0		ENST00000468247.1_1_1:8716447-8763213:-|nuORF	ENST00000468247.1_1_1:8716447-8763213:-|nuORF	ENST00000468247.1_1_1:8716447-8763213:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	629.750244140625	2	629.351806	1256.68906	-0.88893	-0.00055945	-1.8894	-0.0011891	-2.7783	-0.0017486	629.3508626873283	134.54	0.30305	134.54	134.37	134.67	0					10	5	3	0	0	0	0.9269	1	51910	51910		3.5965	0	1	3270200			15289	12299	11102	11188	14922	14922					0.07098142713880407
FPRWRWQRLRR	11	Unmodified	_FPRWRWQRLRR_					0	0	0			REV__ENST00000341285.7_2_4:15656858-15657005:-|nuORF	REV__ENST00000341285.7_2_4:15656858-15657005:-|nuORF	MSMS	A375_MHC_IP_R1	1	828.9765014648438	2	828.976559	1655.93856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.59	1	104.59	104.09	105.09	0								0	0	0	0.1635	1	38404	38404		1.4819	1.1749	1		+		15290	23731	11103	11189	14923	14923					0.13683325390275058
FPSCCTLFDS	10	Unmodified	_FPSCCTLFDS_					0	0	0		ENST00000393094.6_1_11:107975177-107975369:+|nuORF	ENST00000393094.6_1_11:107975177-107975369:+|nuORF	ENST00000393094.6_1_11:107975177-107975369:+|nuORF	MSMS	A375_MHC_IP_R1	1	560.1830444335938	2	560.22791	1118.44127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.37	1	137.37	136.87	137.87	0								0	0	0	0.1552	1	52881	52881		3.9444	0.94915	1				15291	11435	11104	11190	14924	14924					-0.11321535051092724
FPSLNRESPN	10	Unmodified	_FPSLNRESPN_					0	0	0		ENST00000356321.4_1_15:35271391-35271448:-|nuORF	ENST00000356321.4_1_15:35271391-35271448:-|nuORF	ENST00000356321.4_1_15:35271391-35271448:-|nuORF	MSMS	A375_MHC_IP_R2	2	581.06298828125	2	580.78837	1159.56219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.61	1	127.88	127.38	128.38	0.26593								0	0	0	0.15105	1	50063	50063		15.847	0	1				15292	10963	11105	11191	14925	14925					-0.011212480217636767
FPSLPEMWPE	10	Unmodified	_FPSLPEMWPE_					0	0	0			REV__nc|ENSG00000204469|P48634-4|PRRC2A	REV__nc|ENSG00000204469|P48634-4|PRRC2A	MSMS	A375_MHC_IP_R1	1	616.8169555664062	2	616.78645	1231.55835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.15	1	100.15	99.646	100.65	0								0	0	0	0.15308	1	36804	36804		10.824	0	1		+		15293	22517	11106	11192	14926	14926					-0.04817053839815344
FPSPLQLFPF	10	Unmodified	_FPSPLQLFPF_					0	0	0			REV__ENST00000497152.6_1_15:91479252-91479489:+|nuORF	REV__ENST00000497152.6_1_15:91479252-91479489:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	398.61773681640625	3	398.21822	1191.63283	-0.15448	-6.1517E-05	0.45644	0.00018176	0.30196	0.00012025	398.2182868946173	20.063	0.65944	20.063	19.725	20.384	0					24	12	3	0	0	0	0.62871	1	5075	5075		18.721	8.5707	1	3303000	+		15294	25467	11107	11193	14927	14927					0.044680770338572984
FPTRKDRLR	9	Unmodified	_FPTRKDRLR_					0	0	0			REV__ENST00000591473.1_1_19:36705638-36705767:-|nuORF	REV__ENST00000591473.1_1_19:36705638-36705767:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	396.2559509277344	3	396.903518	1187.68872	0.023443	9.3046E-06	0.011908	4.7265E-06	0.035352	1.4031E-05	396.90357562978585	40.503	0.30541	40.503	40.355	40.66	0					10	5	2	0	0	0	0.75164	1	13930	13930		6.1918	0	1	1760800	+		15295	26445	11108	11194	14928	14928					0.10238722994017735
FPVEMADLARE	11	Unmodified	_FPVEMADLARE_					0	0	0			REV__ENST00000559466.1_1_21:9908333-9912191:-|nuORF	REV__ENST00000559466.1_1_21:9908333-9912191:-|nuORF	MSMS	A375_MHC_IP_R1	1	639.2083740234375	2	639.313363	1276.61217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.98	1	101.98	101.48	102.48	0								0	0	0	0.16179	1	37477	37477		9.3831	0.63772	1		+		15296	26156	11109	11195	14929	14929					-0.015068814081132587
FPVLFQDVIY	10	Unmodified	_FPVLFQDVIY_					0	0	0		ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2;ENST00000561189.1_1_15:44789252-44795711:+|nuORF	ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	MULTI-SECPEP	A375_MHC_IP_R2	2	621.4782104492188	2	620.834257	1239.65396	-0.57993	-0.00036004	0.9894	0.00061425	0.40947	0.00025421	621.3364474878931	85.091	0.15277	85.827	85.729	85.882	0.73601					4	2	2	0	0	0	0.89761	1	32361	32361		17.113	2.7075	1	438500			15297	4912	11110	11196	14930	14930					0.04372042342720306
FPVWKGNSL	9	Unmodified	_FPVWKGNSL_					0	0	0			REV__nc|ENSG00000244038|P39656-2|DDOST	REV__nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	A375_MHC_IP_R2	2	524.70751953125	2	524.284734	1046.55492	-0.47399	-0.00024851	-0.113	-5.9244E-05	-0.58699	-0.00030775	524.2845078648398	102.25	3.565	103.01	101.19	104.75	0.76428					178	69	3	0	0	0	0.41409	1	39183	39183		24.021	2.4836	1	4420500	+		15298	22819	11111	11197	14931	14931					0.03350064168489553
FPWFRFES	8	Unmodified	_FPWFRFES_					0	0	0			REV__ENST00000481677.1_1_1:160808287-160808924:-|nuORF	REV__ENST00000481677.1_1_1:160808287-160808924:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	557.6810302734375	2	558.269084	1114.52362	-0.65736	-0.00036698	-0.7174	-0.0004005	-1.3748	-0.00076749	558.770717783089	42.265	0.51076	43.037	42.707	43.218	0.7724					16	9	3	0	0	0	0.91495	1	15639	15639		24.674	2.9272	1	1078900	+		15299	25264	11112	11198	14932	14932					-0.029065088656125226
FPWHRNFNY	9	Unmodified	_FPWHRNFNY_					0	0	0			REV__ENSG00000147145|ENST00000614823|LPAR4	REV__ENSG00000147145|ENST00000614823|LPAR4	MULTI-SECPEP	A375_MHC_IP_R1	1	640.4999389648438	2	640.801614	1279.58868	-0.61078	-0.00039139	-1.025	-0.00065684	-1.6358	-0.0010482	641.8054634027942	75.929	0.55465	75.929	75.614	76.168	0					27	10	4	0	0	0	0.75466	1	27668	27668		7.9102	0	1	3697800	+		15300	19574	11113	11199	14933	14933					-0.039935143397769934
FPWLRMWRRER	11	Unmodified	_FPWLRMWRRER_					0	0	0		ENSG00000187186|ENST00000421828|unknown	ENSG00000187186|ENST00000421828|unknown	ENSG00000187186|ENST00000421828|unknown	MSMS	A375_MHC_IP_R2	2	545.024169921875	3	544.961261	1631.86195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.647	1	43.419	42.919	43.919	0.7724								0	0	0	0.16309	1	15866	15866		2.6312	1.3016	1				15301	8811	11114	11200	14934	14934					0.0712976577876816
FQAELRQAF	9	Unmodified	_FQAELRQAF_					0	0	0		ENST00000553597.5_1_15:25166388-25213181:+|nuORF;ENSG00000273173|ENST00000577949|SNURF;ENST00000400100.5_1_15:25165251-25213181:+|nuORF	ENST00000553597.5_1_15:25166388-25213181:+|nuORF	ENST00000553597.5_1_15:25166388-25213181:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	555.6907348632812	2	555.290548	1108.56654	-0.49532	-0.00027504	-0.21008	-0.00011666	-0.7054	-0.0003917	555.2903081809843	63.241	0.71778	63.241	62.966	63.684	0					42	13	4	0	0	0	0.0095437	1	22839	22839		128.93	59.828	1	10057000			15302	9997	11115	11201	14935	14935					0.01660261191796053
FQAELRQAF	9	Unmodified	_FQAELRQAF_					0	0	0		ENST00000553597.5_1_15:25166388-25213181:+|nuORF;ENSG00000273173|ENST00000577949|SNURF;ENST00000400100.5_1_15:25165251-25213181:+|nuORF	ENST00000553597.5_1_15:25166388-25213181:+|nuORF	ENST00000553597.5_1_15:25166388-25213181:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	555.6904907226562	2	555.290548	1108.56654	-0.86054	-0.00047785	-0.16821	-9.3404E-05	-1.0287	-0.00057125	555.2903858353401	62.482	0.65867	63.225	62.925	63.584	0.74263					44	12	5	0	0	0	0.0098956	1	23659	23659		128.93	53.172	1	9391000			15303	9997	11115	11201	14936	14936					0.01660261191796053
FQAFVWWLLGI	11	Unmodified	_FQAFVWWLLGI_					0	0	0		nc|ENSG00000205060|Q969S0-2|SLC35B4;nc|ENSG00000205060|Q969S0-3|SLC35B4;ENSG00000205060|ENST00000378509|SLC35B4	nc|ENSG00000205060|Q969S0-2|SLC35B4	nc|ENSG00000205060|Q969S0-2|SLC35B4	MSMS	A375_MHC_IP_R2	2	460.6219177246094	3	460.588536	1378.74378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.665	1	48.426	47.926	48.926	0.76128								0	0	0	0.1629	1	17878	17878		1.4551	0.24029	1				15304	9496	11116	11202	14937	14937					0.06955716741936158
FQALNVYY	8	Unmodified	_FQALNVYY_					0	0	0		ENSG00000137509|ENST00000313010|PRCP;nc|ENSG00000137509|P42785-2|PRCP	ENSG00000137509|ENST00000313010|PRCP	ENSG00000137509|ENST00000313010|PRCP	MULTI-SECPEP	A375_MHC_IP_R1	1	509.6825256347656	2	509.255643	1016.49673	-0.30952	-0.00015763	1.4694	0.00074829	1.1599	0.00059067	509.2562898283971	43.425	0.96702	43.425	42.942	43.909	0					21	18	2	0	0	0	0.93416	1	15288	15288		14.582	2.0501	1	4146100			15305	4893	11117	11203	14938	14938					-0.010856174768150595
FQDDNNLYL	9	Unmodified	_FQDDNNLYL_					0	0	0		nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA;ENST00000478573.6_1_1:227381485-227504745:-|nuORF	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-MSMS	A375_MHC_IP_R1	1	1141.5936279296875	1	1141.51603	1140.50875	0.10139	0.00011573	-0.36363	-0.00041509	-0.26224	-0.00029936	1141.5156326886356	89.279	0.50642	89.279	88.97	89.476	0					13	9	2	0	0	0	0.14858	1	32790	32790		41.956	2.0059	1	1544800			15306	5433	11118	11204	14939	14939					-0.05588045524268637
FQDDNNLYL	9	Unmodified	_FQDDNNLYL_					0	0	0		nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA;ENST00000478573.6_1_1:227381485-227504745:-|nuORF	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-MSMS	A375_MHC_IP_R1	1	572.2103881835938	2	571.261653	1140.50875	-0.21902	-0.00012512	-0.35014	-0.00020002	-0.56916	-0.00032514	571.2614667916105	89.25	0.71041	89.25	88.867	89.577	0					34	13	3	0	0	0	0.60101	1	32825	32825		14.838	0.93222	1	6591700			15307	5433	11118	11204	14940	14940					-0.05588045524268637
FQDDNNLYL	9	Unmodified	_FQDDNNLYL_					0	0	0		nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA;ENST00000478573.6_1_1:227381485-227504745:-|nuORF	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-MSMS	A375_MHC_IP_R2	2	572.23583984375	2	571.261653	1140.50875	-0.21755	-0.00012428	-0.11385	-6.5038E-05	-0.3314	-0.00018932	571.2614360484387	88.578	0.96151	89.309	88.875	89.836	0.7318					48	18	4	0	0	0	0.4867	1	33735	33735		20.454	0	1	7111000			15308	5433	11118	11204	14941	14941					-0.05588045524268637
FQDDNNLYL	9	Unmodified	_FQDDNNLYL_					0	0	0		nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA;ENST00000478573.6_1_1:227381485-227504745:-|nuORF	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	571.261653	1140.50875	-0.21902	-0.00012512	-0.35014	-0.00020002	-0.56916	-0.00032514	571.2614667916105	89.25	0.71041	89.25	88.867	89.577	0	-0.029413	-0.00011962	NaN	20.454	34	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6591700			15309	5433	11118	11204							-0.05588045524268637
FQDDNNLYL	9	Unmodified	_FQDDNNLYL_					0	0	0		nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA;ENST00000478573.6_1_1:227381485-227504745:-|nuORF	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-MATCH	A375_MHC_IP_R2	2		1	1141.51603	1140.50875	0.20588	0.00023502	-0.4014	-0.00045821	-0.19552	-0.00022319	1141.5155290492366	88.557	0.50661	89.289	89.026	89.533	0.7318	0.0049567	-1.8628E-05	NaN	41.956	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3094600			15310	5433	11118	11204							-0.05588045524268637
FQDEINWRL	9	Unmodified	_FQDEINWRL_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-SECPEP	A375_MHC_IP_R2	2	611.2064819335938	2	610.806562	1219.59857	-0.42197	-0.00025774	-0.76073	-0.00046466	-1.1827	-0.0007224	610.8063322339881	92.64	0.55743	93.379	93.089	93.646	0.73901					26	10	3	0	0	0	0.011308	1	35243	35243		128.93	71.21	1	5847900			15311	2365	11119	11205	14942	14942					-0.0024437112506348058
FQDENHLYL	9	Unmodified	_FQDENHLYL_					0	0	0		ENSG00000198752|ENST00000361246|CDC42BPB;CDC42BPB|p.A142V|1|0.42|ENSG00000198752|chr14:103003950-103003950|G/A|missense_variant;CDC42BPB|p.D427Mfs*31|1|0.2|ENSG00000198752|chr14:102975995-102975995|G/-|frameshift_variant	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-SECPEP	A375_MHC_IP_R2	2	590.1776733398438	2	589.77747	1177.54039	-0.70561	-0.00041616	0.64569	0.00038081	-0.059926	-3.5343E-05	589.7776861833539	65.492	0.4566	66.23	66.018	66.475	0.73812					17	8	3	0	0	0	0.23894	1	24871	24871		40.239	15.565	1	1396900			15312	9316	11120	11206	14943	14943					-0.04128052770306567
FQDPVPLTV	9	Unmodified	_FQDPVPLTV_					0	0	0		nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	MULTI-MSMS	A375_MHC_IP_R1	1	508.67626953125	2	508.276575	1014.5386	-0.18908	-9.6107E-05	-0.57184	-0.00029065	-0.76092	-0.00038676	508.27637264499265	109.3	1.7305	109.3	108.97	110.7	0					83	33	4	0	0	0	0.007896	3	40039	40039;40238;40457		129.77	58.639	1	46160000			15313	3809	11121	11207	14944;14945;14946	14944					0.03190938211696448
FQDPVPLTV	9	Unmodified	_FQDPVPLTV_					0	0	0		nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	MULTI-MSMS	A375_MHC_IP_R2	2	508.6759338378906	2	508.276575	1014.5386	-0.70633	-0.00035901	-0.1675	-8.5138E-05	-0.87383	-0.00044415	508.2765748227673	108.59	1.6785	109.34	108.91	110.59	0.74683					89	32	5	0	0	0	0.007896	2	40932	40932;41134		129.77	51.623	1	49976000			15314	3809	11121	11207	14947;14948	14947					0.03190938211696448
FQDPYTRSL	9	Unmodified	_FQDPYTRSL_					0	0	0		ENST00000474760.1_1_6:105609928-105627738:-|nuORF	ENST00000474760.1_1_6:105609928-105627738:-|nuORF	ENST00000474760.1_1_6:105609928-105627738:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	564.179443359375	2	563.780013	1125.54547	-0.44676	-0.00025187	-0.37247	-0.00020999	-0.81923	-0.00046187	563.779858643596	55.098	0.66037	55.098	54.72	55.381	0					39	12	4	0	0	0	0.093901	1	19671	19671		55.235	24.598	1	14497000			15315	12410	11122	11208	14949	14949					-0.012277489077177961
FQDPYTRSL	9	Unmodified	_FQDPYTRSL_					0	0	0		ENST00000474760.1_1_6:105609928-105627738:-|nuORF	ENST00000474760.1_1_6:105609928-105627738:-|nuORF	ENST00000474760.1_1_6:105609928-105627738:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	564.1797485351562	2	563.780013	1125.54547	-0.74441	-0.00041968	-0.54074	-0.00030486	-1.2852	-0.00072455	563.779910192518	54.39	0.55582	55.14	54.814	55.37	0.75075					30	10	4	0	0	0	0.014148	2	20477	20477;20573		97.741	43.908	1	12750000			15316	12410	11122	11208	14950;14951	14950					-0.012277489077177961
FQEFEIKKA	9	Unmodified	_FQEFEIKKA_					0	0	0			REV__nc|ENSG00000168530|P05976-2|MYL1	REV__nc|ENSG00000168530|P05976-2|MYL1	MULTI-MSMS	A375_MHC_IP_R1	1	380.9415283203125	3	380.541363	1138.60226	0.90472	0.00034428	-0.73464	-0.00027956	0.17008	6.4724E-05	380.5410611989405	44.954	1.1626	44.954	44.626	45.789	0					66	22	5	0	0	0	0.135	1	15652	15652		44.392	4.1527	1	105230000	+		15317	20864	11123	11209	14952	14952					0.03850298648808348
FQEFEIKKA	9	Unmodified	_FQEFEIKKA_					0	0	0			REV__nc|ENSG00000168530|P05976-2|MYL1	REV__nc|ENSG00000168530|P05976-2|MYL1	MULTI-MSMS	A375_MHC_IP_R2	2	380.9414367675781	3	380.541363	1138.60226	0.14285	5.4359E-05	-0.29775	-0.00011331	-0.15491	-5.8949E-05	380.54122762111245	44.088	1.1178	44.858	44.58	45.698	0.7691					51	21	3	0	0	0	0.052747	1	16408	16408		63.227	11.812	1	100130000	+		15318	20864	11123	11209	14953	14953					0.03850298648808348
FQEVLYVDP	9	Unmodified	_FQEVLYVDP_					0	0	0		nc|ENSG00000147050|O15550|KDM6A;ENSG00000147050|ENST00000611820|KDM6A	nc|ENSG00000147050|O15550|KDM6A	nc|ENSG00000147050|O15550|KDM6A	MULTI-SECPEP	A375_MHC_IP_R1	1	555.7250366210938	2	555.279315	1108.54408	-0.48948	-0.0002718	-2.8509	-0.0015831	-3.3404	-0.0018549	555.2775066216773	77.92	0.51157	77.92	77.639	78.15	0					11	9	2	0	0	0	0.4261	1	28344	28344		30.637	3.0077	1	1026000			15319	5652	11124	11210	14954	14954					-0.005853829964735269
FQEYYRQRLRY	11	Unmodified	_FQEYYRQRLRY_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MULTI-SECPEP	A375_MHC_IP_R1	1	541.9680786132812	3	541.279313	1620.81611	-0.98232	-0.00053171	-2.004	-0.0010847	-2.9864	-0.0016165	541.2783686188269	67.628	0.2543	67.628	67.5	67.754	0					6	4	2	0	0	0	1.0014	1	24541	24541		0.45452	0.38125	1	1045600			15320	1812	11125	11211	14955	14955					0.030533990775438724
FQEYYRQRLRY	11	Unmodified	_FQEYYRQRLRY_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MULTI-MATCH	A375_MHC_IP_R2	2		3	541.279313	1620.81611	-0.91199	-0.00049364	-1.63	-0.00088227	-2.542	-0.0013759	541.2786254915216	66.864	0.35593	67.601	67.445	67.801	0.73631	-0.013757	0.00022003	NaN	0.45452	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	585740			15321	1812	11125	11211							0.030533990775438724
FQFFSWWNSY	10	Unmodified	_FQFFSWWNSY_					0	0	0		ENSG00000059769|ENST00000313525|DNAJC25;nc|ENSG00000059769|Q9H1X3-2|DNAJC25;ENST00000463589.5_1_9:114405367-114415499:+|nuORF	ENSG00000059769|ENST00000313525|DNAJC25	ENSG00000059769|ENST00000313525|DNAJC25	MSMS	A375_MHC_IP_R1	1	706.2837524414062	2	706.308938	1410.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.91	1	124.91	124.41	125.41	0								0	0	0	0.15158	1	47257	47257		14.838	5.4551	1				15322	1306	11126	11212	14956	14956					-0.08555486982254479
FQFLLSEKRIW	11	Unmodified	_FQFLLSEKRIW_					0	0	0			REV__YTHDC2|p.P1380L|1|0.37|ENSG00000047188|chr5:113592105-113592105|C/T|missense_variant	REV__YTHDC2|p.P1380L|1|0.37|ENSG00000047188|chr5:113592105-113592105|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	489.6744689941406	3	489.61	1465.80817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.367	1	62.367	61.867	62.867	0								0	0	0	0.16232	1	22524	22524		6.6235	2.5068	1		+		15323	29009	11127	11213	14957	14957					0.09389871828079777
FQHTGIYSV	9	Unmodified	_FQHTGIYSV_					0	0	0		ENSG00000187688|ENST00000338560|TRPV2;ENST00000583241.1_1_17:16331654-16335285:+|nuORF	ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	MULTI-MSMS	A375_MHC_IP_R2	2	526.6637573242188	2	526.263999	1050.51345	-0.31562	-0.0001661	-1.2463	-0.00065587	-1.5619	-0.00082197	526.2631014481206	47.661	0.86521	48.423	47.817	48.682	0.76128					24	16	2	0	0	0	0.012447	2	17881	17863;17881		93.166	58.764	1	5127800			15324	8849	11128	11214	14958;14959	14959					-0.0097911659086094
FQIGPVAGV	9	Unmodified	_FQIGPVAGV_					0	0	0		nc|ENSG00000174837|Q14246-2|ADGRE1;nc|ENSG00000174837|Q14246-3|ADGRE1;ENSG00000174837|ENST00000312053|ADGRE1;nc|ENSG00000174837|Q14246-4|ADGRE1;nc|ENSG00000174837|Q14246-5|ADGRE1	nc|ENSG00000174837|Q14246-2|ADGRE1	nc|ENSG00000174837|Q14246-2|ADGRE1	MULTI-MSMS	A375_MHC_IP_R1	1	444.6530456542969	2	444.252903	886.491253	-0.038392	-1.7056E-05	0.066063	2.9349E-05	0.027671	1.2293E-05	444.252889059587	104.07	0.66136	104.07	103.83	104.49	0					25	12	3	0	0	0	0.2002	1	38182	38182		37.974	5.857	1	4507100			15325	7905	11129	11215	14960	14960					0.0434670373138033
FQIGPVAGV	9	Unmodified	_FQIGPVAGV_					0	0	0		nc|ENSG00000174837|Q14246-2|ADGRE1;nc|ENSG00000174837|Q14246-3|ADGRE1;ENSG00000174837|ENST00000312053|ADGRE1;nc|ENSG00000174837|Q14246-4|ADGRE1;nc|ENSG00000174837|Q14246-5|ADGRE1	nc|ENSG00000174837|Q14246-2|ADGRE1	nc|ENSG00000174837|Q14246-2|ADGRE1	MULTI-MSMS	A375_MHC_IP_R2	2	444.6524963378906	2	444.252903	886.491253	-0.35186	-0.00015631	-0.12896	-5.7291E-05	-0.48082	-0.0002136	444.2527590698447	103.25	0.76326	104.01	103.74	104.5	0.76428					28	14	3	0	0	0	0.27715	1	39095	39095		32.305	0.18852	1	5089800			15326	7905	11129	11215	14961	14961					0.0434670373138033
FQIHPTFL	8	Unmodified	_FQIHPTFL_					0	0	0		ENST00000178638.7_1_15:63615668-63615971:-|nuORF	ENST00000178638.7_1_15:63615668-63615971:-|nuORF	ENST00000178638.7_1_15:63615668-63615971:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	502.1716003417969	2	501.774003	1001.53345	-0.94072	-0.00047203	-2.5718	-0.0012905	-3.5125	-0.0017625	501.77307519853287	57.524	0.81671	58.273	57.711	58.528	0.74894					26	15	3	0	0	0	0.69059	1	21755	21755		38.151	0	1	5086700			15327	10072	11130	11216	14962	14962					0.0327467913974715
FQIKKKTKRLY	11	Unmodified	_FQIKKKTKRLY_					0	0	0		ENSG00000092140|ENST00000206595|G2E3	ENSG00000092140|ENST00000206595|G2E3	ENSG00000092140|ENST00000206595|G2E3	MULTI-SECPEP	A375_MHC_IP_R2	2	485.65350341796875	3	484.973161	1451.89765	-0.86516	-0.00041958	3.7487	0.001818	2.8836	0.0013985	485.30810451812056	57.886	0.3017	58.635	58.477	58.779	0.74894					7	5	2	0	0	0	1.0002	1	21890	21890		1.3296	0	1	1001600			15328	1996	11131	11217	14963	14963					0.18978126507454363
FQIMQEEL	8	Unmodified	_FQIMQEEL_					0	0	0		nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1;nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-3|GOLGB1	nc|ENSG00000173230|Q14789-3|GOLGB1	MULTI-MSMS	A375_MHC_IP_R1	1	520.6685791015625	2	519.252243	1036.48993	-0.4639	-0.00024088	-0.53198	-0.00027623	-0.99588	-0.00051711	519.2520057565117	102.11	1.7737	102.11	101.65	103.42	0					90	34	5	0	0	0	0.7256	1	37451	37451		26.884	3.7352	1	56544000			15329	7780	11132	11218	14964	14964					-0.02685298419692117
FQIPHQTV	8	Unmodified	_FQIPHQTV_					0	0	0		ENST00000261226.8_1_12:94964130-94964496:-|nuORF	ENST00000261226.8_1_12:94964130-94964496:-|nuORF	ENST00000261226.8_1_12:94964130-94964496:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	485.6607360839844	2	485.261259	968.507966	-0.60647	-0.0002943	-0.020565	-9.9793E-06	-0.62704	-0.00030428	485.261231674085	62.766	0.40266	63.509	63.282	63.685	0.74263					12	7	2	0	0	0	0.69557	1	23819	23819		36.127	2.0246	1	2841200			15330	10276	11133	11219	14965	14965					0.0224520461732709
FQIPHQTV	8	Unmodified	_FQIPHQTV_					0	0	0		ENST00000261226.8_1_12:94964130-94964496:-|nuORF	ENST00000261226.8_1_12:94964130-94964496:-|nuORF	ENST00000261226.8_1_12:94964130-94964496:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	485.261259	968.507966	-0.24635	-0.00011954	-0.51778	-0.00025126	-0.76413	-0.0003708	485.26098924661943	63.741	0.66327	63.741	63.427	64.09	0	0.11588	-0.00025727	NaN	36.127	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1592000			15331	10276	11133	11219							0.0224520461732709
FQKFRDRR	8	Unmodified	_FQKFRDRR_					0	0	0			REV__ENSG00000198944|ENST00000378693|SOWAHA	REV__ENSG00000198944|ENST00000378693|SOWAHA	MULTI-MSMS	A375_MHC_IP_R1	1	385.28369140625	3	384.884346	1151.63121	-0.036098	-1.3894E-05	-0.60564	-0.0002331	-0.64174	-0.000247	384.88408057572923	26.074	1.0133	26.074	25.765	26.779	0					52	19	4	0	0	0	0.77523	1	7708	7708		12.241	0.013068	1	40824000	+		15332	22455	11134	11220	14966	14966					0.06145880788449176
FQKFRDRR	8	Unmodified	_FQKFRDRR_					0	0	0			REV__ENSG00000198944|ENST00000378693|SOWAHA	REV__ENSG00000198944|ENST00000378693|SOWAHA	MULTI-MSMS	A375_MHC_IP_R2	2	385.2842712402344	3	384.884346	1151.63121	-0.55602	-0.000214	-0.21953	-8.4492E-05	-0.77555	-0.0002985	384.88420749422903	25.205	1.0177	25.849	25.568	26.585	0.64368					47	19	4	0	0	0	0.77523	1	8397	8397		12.241	2.1667	1	44810000	+		15333	22455	11134	11220	14967	14967					0.06145880788449176
FQLNKLYW	8	Unmodified	_FQLNKLYW_					0	0	0			REV__nc|ENSG00000158104|P32754-2|HPD	REV__nc|ENSG00000158104|P32754-2|HPD	MULTI-SECPEP	A375_MHC_IP_R2	2	371.955810546875	3	371.202682	1110.58622	0.13789	5.1185E-05	0.132	4.8998E-05	0.26989	0.00010018	371.2026595987519	23.812	0.66154	24.443	24.029	24.691	0.63014					13	12	2	0	0	0	0.972	1	7723	7723		13.906	0	1	1749000	+		15334	20061	11135	11221	14968	14968					0.03534637202551494
FQLQFHTGF	9	Unmodified	_FQLQFHTGF_					0	0	0		nc|ENSG00000116675|O75061-3|DNAJC6;nc|ENSG00000116675|O75061-4|DNAJC6;nc|ENSG00000116675|O75061|DNAJC6;DNAJC6|p.M856Dfs*32|1|0.02|ENSG00000116675|chr1:65411326-65411327|-/GGAGACCAAGTGGAAACCAGTT|frameshift_variant;ENSG00000116675|ENST00000371069|DNAJC6	nc|ENSG00000116675|O75061-3|DNAJC6	nc|ENSG00000116675|O75061-3|DNAJC6	MULTI-SECPEP	A375_MHC_IP_R2	2	374.9375	3	375.522303	1123.54508	0.40469	0.00015197	-0.46481	-0.00017455	-0.060122	-2.2577E-05	375.85655972241864	44.14	0.50673	44.909	44.631	45.138	0.7691					19	9	3	0	0	0	0.77834	1	16448	16448		5.2969	0	1	1569800			15335	778	11136	11222	14969	14969					-0.011751238369015482
FQLRRRRKDRL	11	Unmodified	_FQLRRRRKDRL_					0	0	0		ENST00000570168.1_1_16:919345-920044:-|nuORF	ENST00000570168.1_1_16:919345-920044:-|nuORF	ENST00000570168.1_1_16:919345-920044:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	515.7175903320312	3	515.318325	1542.93315	-0.60263	-0.00031055	-0.86645	-0.0004465	-1.4691	-0.00075704	515.3181974333328	64.944	0.76142	64.944	64.495	65.257	0					30	14	4	0	0	0	1.0015	1	23527	23527		0.073264	0	1	2569200			15336	13601	11137	11223	14970	14970					0.1833960180779286
FQLRRRRKDRL	11	Unmodified	_FQLRRRRKDRL_					0	0	0		ENST00000570168.1_1_16:919345-920044:-|nuORF	ENST00000570168.1_1_16:919345-920044:-|nuORF	ENST00000570168.1_1_16:919345-920044:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	516.0518188476562	3	515.318325	1542.93315	-0.6964	-0.00035887	-0.8487	-0.00043735	-1.5451	-0.00079622	515.318242942469	63.845	0.65988	64.585	64.191	64.85	0.74022					32	12	4	0	0	0	0.73926	1	24215	24215		0.073264	0.0088572	1	4100000			15337	13601	11137	11223	14971	14971					0.1833960180779286
FQLRRRRKDRL	11	Unmodified	_FQLRRRRKDRL_					0	0	0		ENST00000570168.1_1_16:919345-920044:-|nuORF	ENST00000570168.1_1_16:919345-920044:-|nuORF	ENST00000570168.1_1_16:919345-920044:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	515.318325	1542.93315	-0.6964	-0.00035887	-0.8487	-0.00043735	-1.5451	-0.00079622	515.318242942469	63.845	0.65988	64.585	64.191	64.85	0.74022	-0.17947	1.4051E-05	NaN	0.073264	32	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4100000			15338	13601	11137	11223							0.1833960180779286
FQLSIDCKKL	10	Unmodified	_FQLSIDCKKL_					0	0	0			REV__ENSG00000079246|ENST00000392132|XRCC5	REV__ENSG00000079246|ENST00000392132|XRCC5	MULTI-SECPEP	A375_MHC_IP_R2	2	399.63629150390625	3	398.889886	1193.64783	-0.10132	-4.0414E-05	-1.16	-0.00046273	-1.2614	-0.00050314	399.2240974061054	31.034	0.40704	31.753	31.567	31.974	0.71857					10	7	2	0	0	0	0.92076	1	11017	11017		9.2438	0.79947	1	2879700	+		15339	16725	11138	11224	14972	14972					0.058752008395231314
FQLTFPLRTNY	11	Unmodified	_FQLTFPLRTNY_					0	0	0		ENSG00000171246|ENST00000306773|NPTX1	ENSG00000171246|ENST00000306773|NPTX1	ENSG00000171246|ENST00000306773|NPTX1	MULTI-MSMS	A375_MHC_IP_R1	1	467.9769287109375	3	467.250472	1398.72959	0.19745	9.2258E-05	-0.42063	-0.00019654	-0.22318	-0.00010428	467.2488551842633	49.259	0.60815	49.259	48.983	49.591	0					32	11	4	0	0	0	0.73472	1	17346	17346		4.4062	0.56024	1	3626400			15340	7588	11139	11225	14973	14973					0.04617019523016097
FQLTVHLAALA	11	Unmodified	_FQLTVHLAALA_					0	0	0			REV__ENSG00000143570|ENST00000356205|SLC39A1	REV__ENSG00000143570|ENST00000356205|SLC39A1	MULTI-MSMS	A375_MHC_IP_R1	1	396.2889404296875	3	395.232641	1182.67609	-0.32224	-0.00012736	0.5079	0.00020074	0.18566	7.3377E-05	395.232758058542	38.385	0.45985	38.385	38.168	38.628	0					21	8	4	0	0	0	0.66366	1	12962	12962		11.065	0	1	2374300	+		15341	19370	11140	11226	14974	14974					0.09206266811133901
FQMQRKSEA	9	Unmodified	_FQMQRKSEA_					0	0	0		nc|ENSG00000102098|Q9UQR0-2|SCML2;ENSG00000102098|ENST00000251900|SCML2	nc|ENSG00000102098|Q9UQR0-2|SCML2	nc|ENSG00000102098|Q9UQR0-2|SCML2	MULTI-SECPEP	A375_MHC_IP_R1	1	375.64849853515625	3	375.522086	1123.54443	0.86834	0.00032608	0.27472	0.00010316	1.1431	0.00042924	375.85668057169147	45.026	0.30455	45.026	44.827	45.132	0					7	5	2	0	0	0	0.78348	1	15717	15717		2.4985	0	1	1305500			15342	2357	11141	11227	14975	14975					-0.012402865482499692
FQNALLVR	8	Unmodified	_FQNALLVR_					0	0	0		nc|ENSG00000163631|P02768-3|ALB;ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-2|ALB	nc|ENSG00000163631|P02768-3|ALB	nc|ENSG00000163631|P02768-3|ALB	MULTI-SECPEP	A375_MHC_IP_R1	1	481.18414306640625	2	480.784902	959.55525	-0.37078	-0.00017826	-0.37503	-0.00018031	-0.7458	-0.00035857	480.78454782542786	55.478	0.56157	55.478	55.228	55.79	0					16	10	2	0	0	0	0.24561	1	19857	19857		81.613	0	1	2808200		+	15343	585	11142	11228	14976	14976					0.0738548388833351
FQNALLVR	8	Unmodified	_FQNALLVR_					0	0	0		nc|ENSG00000163631|P02768-3|ALB;ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-2|ALB	nc|ENSG00000163631|P02768-3|ALB	nc|ENSG00000163631|P02768-3|ALB	MULTI-SECPEP	A375_MHC_IP_R2	2	481.1843566894531	2	480.784902	959.55525	-0.76364	-0.00036715	-0.31302	-0.0001505	-1.0767	-0.00051764	480.7847147329551	54.594	0.50703	55.345	55.068	55.575	0.75075					16	9	2	0	0	0	0.81376	1	20598	20598		39.957	0	1	4152000		+	15344	585	11142	11228	14977	14977					0.0738548388833351
FQNRRAKWRRQ	11	Unmodified	_FQNRRAKWRRQ_					0	0	0		ENSG00000173976|ENST00000555633|RAX2;ENSG00000134438|ENST00000334889|RAX	ENSG00000173976|ENST00000555633|RAX2	ENSG00000173976|ENST00000555633|RAX2	MSMS	A375_MHC_IP_R1	1	773.4833374023438	2	773.434724	1544.85489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.944	1	36.944	36.444	37.444	0								0	0	0	0.16354	1	12415	12415		0.30703	0.03801	1				15345	4574	11143	11229	14978	14978					0.10426169222591852
FQPDLVKRI	9	Unmodified	_FQPDLVKRI_					0	0	0		ENSG00000081760|ENST00000316519|AACS;nc|ENSG00000081760|Q86V21-3|AACS;ENST00000503486.6_1_5:178195542-178224582:-|nuORF	ENSG00000081760|ENST00000316519|AACS	ENSG00000081760|ENST00000316519|AACS	MULTI-MSMS	A375_MHC_IP_R1	1	372.9573059082031	3	372.557236	1114.64988	0.17564	6.5436E-05	0.16291	6.0693E-05	0.33855	0.00012613	372.5572436419458	53.14	0.60745	53.14	52.744	53.352	0					19	11	2	0	0	0	0.67787	1	18982	18982		8.9762	8.9762	1	1935900			15346	1742	11144	11230	14979	14979					0.0971399763966474
FQPDLVKRI	9	Unmodified	_FQPDLVKRI_					0	0	0		ENSG00000081760|ENST00000316519|AACS;nc|ENSG00000081760|Q86V21-3|AACS;ENST00000503486.6_1_5:178195542-178224582:-|nuORF	ENSG00000081760|ENST00000316519|AACS	ENSG00000081760|ENST00000316519|AACS	MULTI-MATCH	A375_MHC_IP_R2	2		3	372.557236	1114.64988	0.066807	2.489E-05	-0.21195	-7.8962E-05	-0.14514	-5.4073E-05	372.557082858399	52.285	0.45559	53.037	52.729	53.184	0.75225	-0.051067	-0.00017185	NaN	8.9762	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2140600			15347	1742	11144	11230							0.0971399763966474
FQRKRKSRRYY	11	Unmodified	_FQRKRKSRRYY_					0	0	0		ENST00000477288.5_1_6:30876177-30879964:+|nuORF;ENSG00000213780|ENST00000259895|GTF2H4	ENST00000477288.5_1_6:30876177-30879964:+|nuORF	ENST00000477288.5_1_6:30876177-30879964:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	396.9716491699219	4	397.729929	1586.89061	-0.29917	-0.00011899	1.753	0.00069721	1.4538	0.00057822	397.7306048855051	26.914	0.35939	27.574	27.363	27.722	0.65992					11	6	2	0	0	0	1.0015	1	9144	9144		0.094841	0.021578	1	1133100			15348	9581	11145	11231	14980	14980					0.12064206679610834
FQRKYVDKL	9	Unmodified	_FQRKYVDKL_					0	0	0		ENSG00000111667|ENST00000229268|USP5;ENST00000537267.5_1_12:6966716-6975238:+|nuORF;nc|ENSG00000111667|P45974-2|USP5	ENSG00000111667|ENST00000229268|USP5	ENSG00000111667|ENST00000229268|USP5	MULTI-SECPEP	A375_MHC_IP_R2	2	399.61859130859375	3	399.564391	1195.67134	-0.42011	-0.00016786	-1.0761	-0.00042997	-1.4962	-0.00059783	399.5639897546881	59.729	0.55495	60.476	60.249	60.804	0.74714					21	10	3	0	0	0	0.79191	1	22685	22685		4.1895	2.8599	1	2294500			15349	3010	11146	11232	14981	14981					0.08133382668370359
FQRKYVDKL	9	Unmodified	_FQRKYVDKL_					0	0	0		ENSG00000111667|ENST00000229268|USP5;ENST00000537267.5_1_12:6966716-6975238:+|nuORF;nc|ENSG00000111667|P45974-2|USP5	ENSG00000111667|ENST00000229268|USP5	ENSG00000111667|ENST00000229268|USP5	MULTI-MATCH	A375_MHC_IP_R1	1		3	399.564391	1195.67134	-0.24839	-9.9249E-05	-0.03565	-1.4244E-05	-0.28404	-0.00011349	399.56401292183835	60.745	0.55964	60.745	60.261	60.821	0	0.13452	0.0010389	NaN	2.086	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1692000			15350	3010	11146	11232							0.08133382668370359
FQRLLYYHRRE	11	Unmodified	_FQRLLYYHRRE_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-SECPEP	A375_MHC_IP_R1	1	528.1636962890625	3	527.61967	1579.83718	-0.38835	-0.0002049	2.2953	0.0012111	1.907	0.0010062	527.6211790080756	62.548	0.20535	62.548	62.403	62.609	0					5	3	2	0	0	0	1.0008	1	22612	22612		2.084	0.62885	1	909420	+		15351	21924	11147	11233	14982	14982					0.07045409177067086
FQRRFRTLG	9	Unmodified	_FQRRFRTLG_					0	0	0			REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	MULTI-MSMS	A375_MHC_IP_R2	2	394.6280517578125	3	394.228113	1179.66251	-0.19725	-7.7762E-05	-0.008168	-3.2201E-06	-0.20542	-8.0982E-05	394.22806309007666	27.187	0.96883	27.866	27.433	28.401	0.67857					52	18	4	0	0	0	0.70411	1	9240	9240		6.6304	6.6304	1	36013000	+		15352	18720	11148	11234	14983	14983					0.0798645382255927
FQRRPQHLTRE	11	Unmodified	_FQRRPQHLTRE_					0	0	0			REV__ENST00000489226.5_1_9:130485405-130489873:+|nuORF	REV__ENST00000489226.5_1_9:130485405-130489873:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	734.8584594726562	2	734.400015	1466.78548	-0.48015	-0.00035263	-0.1561	-0.00011464	-0.63625	-0.00046726	734.90128122605	128.56	0.20108	128.56	128.43	128.63	0					5	3	2	0	0	0	0.73327	1	49403	49403		5.7834	1.2546	1	4155700	+		15353	25367	11149	11235	14984	14984					0.07075665483148441
FQRRYGARI	9	Unmodified	_FQRRYGARI_					0	0	0		ENSG00000180767|ENST00000319340|CHST13	ENSG00000180767|ENST00000319340|CHST13	ENSG00000180767|ENST00000319340|CHST13	MULTI-MSMS	A375_MHC_IP_R2	2	390.2774963378906	3	389.55623	1165.64686	-0.54652	-0.0002129	0.23113	9.0039E-05	-0.31539	-0.00012286	389.5563141155653	26.494	1.8349	27.154	26.245	28.08	0.65992					104	35	5	0	0	0	0.69317	1	9120	9120		7.609	1.4032	1	174050000			15354	8314	11150	11236	14985	14985					0.07066167305515592
FQSLLFVF	8	Unmodified	_FQSLLFVF_					0	0	0		ENST00000368055.1_2_1:160461117-160493028:-|nuORF;nc|ENSG00000162739|Q96DU3-3|SLAMF6;nc|ENSG00000162739|Q96DU3-2|SLAMF6;ENSG00000162739|ENST00000368057|SLAMF6	ENST00000368055.1_2_1:160461117-160493028:-|nuORF	ENST00000368055.1_2_1:160461117-160493028:-|nuORF	MSMS	A375_MHC_IP_R1	1	500.6902160644531	2	500.778754	999.542954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.024	1	42.024	41.524	42.524	0								0	0	0	0.16876	1	14541	14541		32.305	5.4218	1				15355	6586	11151	11237	14986	14986					0.04316447425287606
FQVGKFPE	8	Unmodified	_FQVGKFPE_					0	0	0		nc|ENSG00000115705|P07202-5|TPO;nc|ENSG00000115705|P07202-8|TPO;nc|ENSG00000115705|P07202-7|TPO;nc|ENSG00000115705|P07202-2|TPO;nc|ENSG00000115705|P07202-4|TPO;nc|ENSG00000115705|P07202-3|TPO;ENSG00000115705|ENST00000329066|TPO	nc|ENSG00000115705|P07202-5|TPO	nc|ENSG00000115705|P07202-5|TPO	MULTI-MSMS	A375_MHC_IP_R1	1	476.650146484375	2	476.25036	950.486168	-0.45774	-0.000218	0.17517	8.3425E-05	-0.28257	-0.00013457	476.25030413751205	63.121	0.71525	63.121	62.762	63.477	0					21	13	2	0	0	0	0.76654	1	22835	22835		15.847	1.0089	1	1545600			15356	3332	11152	11238	14987	14987					0.00894399868752771
FQVGKFPE	8	Unmodified	_FQVGKFPE_					0	0	0		nc|ENSG00000115705|P07202-5|TPO;nc|ENSG00000115705|P07202-8|TPO;nc|ENSG00000115705|P07202-7|TPO;nc|ENSG00000115705|P07202-2|TPO;nc|ENSG00000115705|P07202-4|TPO;nc|ENSG00000115705|P07202-3|TPO;ENSG00000115705|ENST00000329066|TPO	nc|ENSG00000115705|P07202-5|TPO	nc|ENSG00000115705|P07202-5|TPO	MULTI-MSMS	A375_MHC_IP_R2	2	476.6498718261719	2	476.25036	950.486168	-0.66876	-0.0003185	-0.455	-0.00021669	-1.1238	-0.00053519	476.2501022045483	62.334	0.9622	63.077	62.622	63.584	0.74263					22	18	2	0	0	0	0.7256	1	23634	23634		26.884	2.2098	1	1170400			15357	3332	11152	11238	14988	14988					0.00894399868752771
FQVHRRLNP	9	Unmodified	_FQVHRRLNP_					0	0	0		ENST00000460472.6_3_2:179604374-179604491:-|nuORF	ENST00000460472.6_3_2:179604374-179604491:-|nuORF	ENST00000460472.6_3_2:179604374-179604491:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	389.9560241699219	3	389.55623	1165.64686	-0.54652	-0.0002129	0.23113	9.0039E-05	-0.31539	-0.00012286	389.5563141155653	26.494	1.8349	27.154	26.245	28.08	0.65992					104	35	5	0	0	0	0.59266	1	8997	8997		15.248	0.41021	1	174050000			15358	12168	11153	11239	14989	14989					0.07066167305515592
FQVMIEFRQ	9	Unmodified	_FQVMIEFRQ_					0	0	0			REV__ENST00000588071.5_1_19:13842681-13843075:+|nuORF	REV__ENST00000588071.5_1_19:13842681-13843075:+|nuORF	MSMS	A375_MHC_IP_R2	2	399.74676513671875	3	399.874348	1196.60121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.449	1	26.093	25.593	26.593	0.64368								0	0	0	0.15486	1	8505	8505		10.151	2.2052	1		+		15359	26409	11154	11240	14990	14990					0.010777610082641331
FQVPEQRV	8	Unmodified	_FQVPEQRV_					0	0	0			REV__ENSG00000154175|ENST00000471714|ABI3BP	REV__ENSG00000154175|ENST00000471714|ABI3BP	MULTI-SECPEP	A375_MHC_IP_R1	1	502.172119140625	2	501.771991	1001.52943	-0.43051	-0.00021602	2.0692	0.0010383	1.6387	0.00082223	501.773354854069	58.399	0.86296	58.399	57.822	58.685	0					33	16	3	0	0	0	0.6033	1	20962	20962		56.177	10.477	1	4592400	+		15360	19868	11155	11241	14991	14991					0.028725896460514377
FQVVHRRQMGL	11	Unmodified	_FQVVHRRQMGL_					0	0	0		ENST00000582201.5_1_17:62781409-62811241:-|nuORF	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	458.0078430175781	3	457.587312	1369.74011	-0.47984	-0.00021957	0.89471	0.00040941	0.41487	0.00018984	457.5875766367732	131.7	0.75647	131.7	131.43	132.18	0					21	14	2	0	0	0	1.001	1	50741	50741		0.40827	0.40827	1	3962700			15361	13689	11156	11242	14992	14992					0.07002723696427893
FQVVHRRQMGL	11	Unmodified	_FQVVHRRQMGL_					0	0	0		ENST00000582201.5_1_17:62781409-62811241:-|nuORF	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	457.587312	1369.74011	-0.27953	-0.00012791	1.0464	0.00047883	0.76688	0.00035092	457.5877546121079	131.55	0.81265	131.74	131.44	132.25	0.18953	0.015648	9.5454E-05	NaN	0.40827	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4449400			15362	13689	11156	11242							0.07002723696427893
FQWISQLRYYW	11	Unmodified	_FQWISQLRYYW_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;ENST00000572640.5_1_16:21008599-21073979:-|nuORF;ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;nc|ENSG00000158486|Q8TD57-3|DNAH3	nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000158486|ENST00000698260|DNAH3	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MSMS	A375_MHC_IP_R2	2	530.5531616210938	3	530.601504	1588.78268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.369	1	90.101	89.601	90.601	0.7318								0	0	0	0.1635	1	34010	34010		0.50596	0.051438	1				15363	3248;6309	11157	11243	14993	14993					0.011843973056784307
FQWSRNCL	8	Unmodified	_FQWSRNCL_					0	0	0		ENST00000283195.10_1_2:109370392-109371385:+|nuORF	ENST00000283195.10_1_2:109370392-109371385:+|nuORF	ENST00000283195.10_1_2:109370392-109371385:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	527.6494750976562	2	527.250369	1052.48618	-0.44642	-0.00023538	-0.26405	-0.00013922	-0.71048	-0.0003746	527.2496652586071	108.54	0.81582	109.28	108.91	109.73	0.74792					32	15	3	0	0	0	0.73946	1	40968	40968		23.148	0	1	2814500			15364	10435	11158	11244	14994	14994					-0.037959234028903666
FQYPDTRYL	9	Unmodified	_FQYPDTRYL_					0	0	0		ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	MULTI-MSMS	A375_MHC_IP_R2	2	602.1954345703125	2	601.795663	1201.57677	-0.51014	-0.000307	-0.7747	-0.00046621	-1.2848	-0.00077321	601.7957089627932	74.24	2.2376	74.977	74.094	76.331	0.73752					62	43	2	0	0	0	0.0089117	2	28144	28144;28184		118.07	49.988	1	23943000			15365	10012	11159	11245	14995;14996	14995					-0.01595175873626431
FRADNLNKL	9	Unmodified	_FRADNLNKL_					0	0	0		ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	364.301025390625	3	364.204974	1089.59309	-0.42352	-0.00015425	0.068758	2.5042E-05	-0.35476	-0.00012921	364.20493730516984	37.426	1.4297	38.197	37.513	38.942	0.7709					64	27	4	0	0	0	0.1952	1	13671	13671		61.09	40.509	1	52486000			15366	1114	11160	11246	14997	14997					0.05187950083131909
FRADNLNKL	9	Unmodified	_FRADNLNKL_					0	0	0		ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	546.2033081054688	2	545.803823	1089.59309	-1.1849	-0.0006467	0.36849	0.00020112	-0.81638	-0.00044558	545.8039501088265	37.432	0.40869	38.203	38.02	38.429	0.7709					24	7	4	0	0	0	0.091861	1	13675	13675		96.367	53.399	1	20700000			15367	1114	11160	11246	14998	14998					0.05187950083131909
FRADNLNKL	9	Unmodified	_FRADNLNKL_					0	0	0		ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MULTI-MATCH	A375_MHC_IP_R1	1		2	545.803823	1089.59309	-0.85463	-0.00046646	0.52377	0.00028588	-0.33086	-0.00018058	545.8040550581605	38.336	0.71487	38.336	37.862	38.577	0	0.066643	7.4789E-05	NaN	96.367	34	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21653000			15368	1114	11160	11246							0.05187950083131909
FRAMYDYM	8	Unmodified	_FRAMYDYM_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MSMS	A375_MHC_IP_R2	2	366.0981750488281	3	366.157867	1095.45177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.91	1	74.648	74.148	75.148	0.73752								0	0	0	0.16876	1	28054	28054		1.6526	0	1				15369	8464	11161	11247	14999	14999					-0.09213507606023086
FRAVITKKV	9	Unmodified	_FRAVITKKV_					0	0	0		ENSG00000198681|ENST00000356661|MAGEA1	ENSG00000198681|ENST00000356661|MAGEA1	ENSG00000198681|ENST00000356661|MAGEA1	MULTI-MSMS	A375_MHC_IP_R1	1	354.9657897949219	3	354.565843	1060.6757	-0.16743	-5.9363E-05	0.0019289	6.8393E-07	-0.1655	-5.8679E-05	354.56581070826127	24.521	0.45341	24.521	24.347	24.801	0					21	8	4	0	0	0	0.33243	2	7007	7007;7076		28.234	21.132	1	32393000			15370	9298	11162	11248	15000;15001	15000					0.14778891881928757
FRAVITKKV	9	Unmodified	_FRAVITKKV_					0	0	0		ENSG00000198681|ENST00000356661|MAGEA1	ENSG00000198681|ENST00000356661|MAGEA1	ENSG00000198681|ENST00000356661|MAGEA1	MULTI-MSMS	A375_MHC_IP_R2	2	354.9656066894531	3	354.565843	1060.6757	-0.48503	-0.00017197	-0.07096	-2.516E-05	-0.55599	-0.00019714	354.56573717482144	23.779	0.30512	24.41	24.232	24.537	0.63014					17	5	4	0	0	0	0.01185	1	7707	7707		93.938	60.493	1	28201000			15371	9298	11162	11248	15002	15002					0.14778891881928757
FRCIFCKGKFK	11	Unmodified	_FRCIFCKGKFK_					0	0	0		ZNF536|p.T277I|1|0.52|ENSG00000198597|chr19:30444392-30444392|C/T|missense_variant	ZNF536|p.T277I|1|0.52|ENSG00000198597|chr19:30444392-30444392|C/T|missense_variant	ZNF536|p.T277I|1|0.52|ENSG00000198597|chr19:30444392-30444392|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	459.9815368652344	3	459.582511	1375.7257	-0.51727	-0.00023773	-0.3931	-0.00018066	-0.91037	-0.00041839	459.5823040438969	27.128	1.1735	27.807	27.128	28.301	0.67857					76	22	5	0	0	0	0.72651	1	9063	9063		12.228	0.59622	1	66654000			15372	30225	11163	11249	15003	15003					0.05286935223898581
FRCLPSALS	9	Unmodified	_FRCLPSALS_					0	0	0			REV__nc|ENSG00000101076|P41235-7|HNF4A	REV__nc|ENSG00000101076|P41235-7|HNF4A	MSMS	A375_MHC_IP_R2	2	497.16119384765625	2	497.262945	992.511337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.484	1	29.163	28.663	29.663	0.67857								0	0	0	0.12568	1	9839	9839		34.102	3.4659	1		+		15373	27147	11164	11250	15004	15004					0.014781313996763856
FRDEELKVKVN	11	Unmodified	_FRDEELKVKVN_					0	0	0		nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5;ENSG00000253485|ENST00000518069|PCDHGA5	nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5	nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5	MULTI-MSMS	A375_MHC_IP_R1	1	459.9892883300781	3	459.589265	1375.74596	0.31491	0.00014473	-0.44792	-0.00020586	-0.133	-6.1127E-05	459.5890854460245	44.897	0.91319	44.897	44.471	45.384	0					25	17	2	0	0	0	0.73318	1	15682	15682		5.8681	0.34485	1	2410700			15374	9861	11165	11251	15005	15005					0.07312100689068757
FRDPSIHSV	9	Unmodified	_FRDPSIHSV_					0	0	0		ENSG00000047056|ENST00000263150|WDR37;nc|ENSG00000047056|Q9Y2I8-2|WDR37	ENSG00000047056|ENST00000263150|WDR37	ENSG00000047056|ENST00000263150|WDR37	MULTI-SECPEP	A375_MHC_IP_R1	1	353.27294921875	3	353.185691	1056.53524	-0.15741	-5.5596E-05	-0.27044	-9.5516E-05	-0.42785	-0.00015111	353.18557886811465	32.067	0.66486	32.067	31.87	32.535	0					11	6	2	0	0	0	0.59098	1	10322	10322		11.518	11.518	1	3515700			15375	1193	11166	11252	15006	15006					0.009236881576953238
FRDQDWADDY	10	Unmodified	_FRDQDWADDY_					0	0	0			REV__nc|ENSG00000171453|O15160-2|POLR1C	REV__nc|ENSG00000171453|O15160-2|POLR1C	MULTI-MSMS	A375_MHC_IP_R1	1	666.16943359375	2	665.770374	1329.52619	-0.59821	-0.00039827	0.96555	0.00064284	0.36735	0.00024457	666.2717583377654	33.288	0.5079	33.288	33.09	33.597	0					25	9	4	0	0	0	0.71866	1	10927	10927		3.9444	1.2092	1	3117000	+		15376	21065	11167	11253	15007	15007					-0.125387499892895
FRDQDWADDY	10	Unmodified	_FRDQDWADDY_					0	0	0			REV__nc|ENSG00000171453|O15160-2|POLR1C	REV__nc|ENSG00000171453|O15160-2|POLR1C	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	665.770374	1329.52619	-0.59821	-0.00039827	0.96555	0.00064284	0.36735	0.00024457	666.2717583377654	33.288	0.5079	33.288	33.09	33.597	0	-0.0019878	-0.00027405	NaN	3.9444	25	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3117000	+		15377	21065	11167	11253							-0.125387499892895
FRDQDWADDY	10	Unmodified	_FRDQDWADDY_					0	0	0			REV__nc|ENSG00000171453|O15160-2|POLR1C	REV__nc|ENSG00000171453|O15160-2|POLR1C	MULTI-MATCH	A375_MHC_IP_R2	2		2	665.770374	1329.52619	-0.86802	-0.0005779	1.6014	0.0010662	0.73337	0.00048826	665.7708342131865	32.555	0.65996	33.292	32.96	33.62	0.73691	0.0019878	0.0005726	NaN	3.9444	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2330000	+		15378	21065	11167	11253							-0.125387499892895
FREEAVDEDP	10	Unmodified	_FREEAVDEDP_					0	0	0		ENSG00000178965|ENST00000326665|ERICH3;nc|ENSG00000178965|Q5RHP9-2|ERICH3;ENST00000433746.2_1_1:75036803-75045091:-|nuORF	ENSG00000178965|ENST00000326665|ERICH3	ENSG00000178965|ENST00000326665|ERICH3	MULTI-SECPEP	A375_MHC_IP_R1	1	402.6232604980469	3	402.847292	1205.52005	-0.61791	-0.00024892	0.31228	0.0001258	-0.30562	-0.00012312	402.847441417027	24.042	0.65949	24.042	23.838	24.498	0					18	12	3	0	0	0	0.93194	1	6802	6802		3.0723	1.33	1	4362600			15379	8191	11168	11254	15008	15008					-0.07449268220807426
FREKSRIIQ	9	Unmodified	_FREKSRIIQ_					0	0	0		ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	MULTI-MSMS	A375_MHC_IP_R1	1	392.9400329589844	3	392.899773	1175.67749	0.0071721	2.8179E-06	0.37129	0.00014588	0.37846	0.0001487	392.8999075505557	27.559	0.35302	27.559	27.331	27.684	0					10	6	2	0	0	0	0.67787	1	8339	8339		8.9762	1.8745	1	1845700			15380	3992	11169	11255	15009	15009					0.09667900899921733
FREKSRIIQ	9	Unmodified	_FREKSRIIQ_					0	0	0		ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	MULTI-MSMS	A375_MHC_IP_R2	2	392.93988037109375	3	392.899773	1175.67749	-0.4826	-0.00018961	0.0014214	5.5847E-07	-0.48118	-0.00018905	392.8998172209054	26.82	0.20429	27.48	27.313	27.517	0.65992					6	3	2	0	0	0	0.46357	1	9075	9075		21.59	8.0715	1	1476700			15381	3992	11169	11255	15010	15010					0.09667900899921733
FREKTGALR	9	Unmodified	_FREKTGALR_					0	0	0		nc|ENSG00000262664|Q8WZ82|OVCA2;ENST00000571710.5_1_17:1945329-1945866:+|nuORF	nc|ENSG00000262664|Q8WZ82|OVCA2	nc|ENSG00000262664|Q8WZ82|OVCA2	MSMS	A375_MHC_IP_R1	1	359.94256591796875	3	359.876969	1076.60908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.546	1	38.546	38.046	39.046	0								0	0	0	0.15486	1	13088	13088		12.175	1.2758	1				15382	14931	11170	11256	15011	15011					0.07383656320052978
FREMEMPSLFS	11	Unmodified	_FREMEMPSLFS_					0	0	0			REV__RSBN1|p.S392Lfs*7|1|0.71|ENSG00000081019|chr1:113797566-113797566|A/-|frameshift_variant	REV__RSBN1|p.S392Lfs*7|1|0.71|ENSG00000081019|chr1:113797566-113797566|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	687.7138061523438	2	687.315048	1372.61554	-0.50058	-0.00034405	-0.72238	-0.0004965	-1.223	-0.00084056	687.3143058920632	56.312	0.50685	56.312	56.041	56.548	0					20	9	3	0	0	0	0.90673	1	20179	20179		18.373	18.373	1	2953800	+		15383	16764	11171	11257	15012	15012					-0.05585954625780687
FREMEMPSLFS	11	Unmodified	_FREMEMPSLFS_					0	0	0			REV__RSBN1|p.S392Lfs*7|1|0.71|ENSG00000081019|chr1:113797566-113797566|A/-|frameshift_variant	REV__RSBN1|p.S392Lfs*7|1|0.71|ENSG00000081019|chr1:113797566-113797566|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	688.0665283203125	2	687.315048	1372.61554	-0.76798	-0.00052784	-0.56456	-0.00038803	-1.3325	-0.00091587	687.3146088804025	55.756	0.40658	56.506	56.287	56.693	0.75014					16	7	3	0	0	0	0.90673	1	21104	21104		18.373	10.764	1	3219100	+		15384	16764	11171	11257	15013	15013					-0.05585954625780687
FRENEKLTVIV	11	Unmodified	_FRENEKLTVIV_					0	0	0			REV__ENSG00000149428|ENST00000617285|HYOU1	REV__ENSG00000149428|ENST00000617285|HYOU1	MULTI-SECPEP	A375_MHC_IP_R1	1	674.7844848632812	2	674.385177	1346.7558	-0.66262	-0.00044686	-0.010948	-7.383E-06	-0.67356	-0.00045424	674.3851597831346	60.897	0.40653	60.897	60.669	61.075	0					18	7	3	0	0	0	0.90584	1	21918	21918		22.736	0	1	6112000	+		15385	19679	11172	11258	15014	15014					0.0962928869444113
FRENEKLTVIV	11	Unmodified	_FRENEKLTVIV_					0	0	0			REV__ENSG00000149428|ENST00000617285|HYOU1	REV__ENSG00000149428|ENST00000617285|HYOU1	MULTI-SECPEP	A375_MHC_IP_R2	2	674.7844848632812	2	674.385177	1346.7558	-1.0484	-0.00070701	0.20522	0.0001384	-0.84317	-0.00056862	674.3854011661379	60.012	0.45541	60.76	60.501	60.957	0.74714					20	8	3	0	0	0	0.82225	1	22704	22704		22.736	0	1	5220300	+		15386	19679	11172	11258	15015	15015					0.0962928869444113
FREPRLLVV	9	Unmodified	_FREPRLLVV_					0	0	0		ENSG00000168028|ENST00000301821|RPSA;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;ENST00000416648.1_1_3:183605526-183606234:+|nuORF	ENSG00000168028|ENST00000301821|RPSA	ENSG00000168028|ENST00000301821|RPSA	MULTI-MSMS	A375_MHC_IP_R1	1	377.30133056640625	3	376.901114	1127.68151	0.48691	0.00018352	-0.35758	-0.00013477	0.12933	4.8745E-05	376.9009374839368	72.41	0.71008	72.41	72.069	72.779	0					29	13	3	0	0	0	0.23226	1	26324	26324		35.612	28.511	1	8032600			15387	7255	11173	11259	15016	15016					0.12277990393590699
FREPRLLVV	9	Unmodified	_FREPRLLVV_					0	0	0		ENSG00000168028|ENST00000301821|RPSA;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;ENST00000416648.1_1_3:183605526-183606234:+|nuORF	ENSG00000168028|ENST00000301821|RPSA	ENSG00000168028|ENST00000301821|RPSA	MULTI-MSMS	A375_MHC_IP_R2	2	377.3010559082031	3	376.901114	1127.68151	-0.023088	-8.7017E-06	-0.0026171	-9.864E-07	-0.025705	-9.6881E-06	376.9010498068031	71.302	0.65864	72.036	71.756	72.414	0.73421					31	12	4	0	0	0	0.23226	1	27020	27020		35.612	35.612	1	10146000			15388	7255	11173	11259	15017	15017					0.12277990393590699
FREPRLLVV	9	Unmodified	_FREPRLLVV_					0	0	0		ENSG00000168028|ENST00000301821|RPSA;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;ENST00000416648.1_1_3:183605526-183606234:+|nuORF	ENSG00000168028|ENST00000301821|RPSA	ENSG00000168028|ENST00000301821|RPSA	MULTI-MSMS	A375_MHC_IP_R2	2	565.3529663085938	2	564.848033	1127.68151	-0.69173	-0.00039072	-0.1443	-8.1508E-05	-0.83603	-0.00047223	564.8480386703172	71.317	0.50764	72.051	71.806	72.314	0.73421					19	9	3	0	0	0	0.69317	1	27103	27103		3.9444	0	1	3091000			15389	7255	11173	11259	15018	15018					0.12277990393590699
FREQYDAG	8	Unmodified	_FREQYDAG_					0	0	0			REV__nc|ENSG00000122367|O75112-4|LDB3	REV__nc|ENSG00000122367|O75112-4|LDB3	MULTI-MSMS	A375_MHC_IP_R1	1	494.1618957519531	2	493.222331	984.430109	-0.55443	-0.00027346	0.075235	3.7108E-05	-0.47919	-0.00023635	493.22231434271526	28.012	0.50225	28.012	27.836	28.339	0					22	9	3	0	0	0	0.77643	1	8524	8524		7.9102	7.9102	1	11992000	+		15390	27201	11174	11260	15019	15019					-0.06272853038717585
FRETKVKLY	9	Unmodified	_FRETKVKLY_					0	0	0		ENST00000428692.5_2_2:201248643-201253989:+|nuORF	ENST00000428692.5_2_2:201248643-201253989:+|nuORF	ENST00000428692.5_2_2:201248643-201253989:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	395.63250732421875	3	395.232641	1182.67609	-0.34763	-0.00013739	0.30673	0.00012123	-0.040894	-1.6163E-05	395.2326777799454	30.595	0.65707	30.595	30.251	30.908	0					26	12	3	0	0	0	0.14659	1	9740	9740		33.821	20.965	1	2884100			15391	11837	11175	11261	15020	15020					0.09206266811133901
FRETKVKLY	9	Unmodified	_FRETKVKLY_					0	0	0		ENST00000428692.5_2_2:201248643-201253989:+|nuORF	ENST00000428692.5_2_2:201248643-201253989:+|nuORF	ENST00000428692.5_2_2:201248643-201253989:+|nuORF	MSMS	A375_MHC_IP_R2	2	395.2713317871094	3	395.232641	1182.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.671	1	30.37	29.87	30.87	0.69872								0	0	0	0.13652	1	10377	10377		23.964	14.72	1				15392	11837	11175	11261	15021	15021					0.09206266811133901
FREYFWKQLRS	11	Unmodified	_FREYFWKQLRS_					0	0	0			REV__ENSG00000075240|ENST00000406902|GRAMD4	REV__ENSG00000075240|ENST00000406902|GRAMD4	MSMS	A375_MHC_IP_R1	1	780.5184936523438	2	780.409518	1558.80448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.14	1	136.14	135.64	136.64	0								0	0	0	0.16337	1	52450	52450		1.1933	0	1		+		15393	16653	11176	11262	15022	15022					0.04743202054214635
FRFEKRNKI	9	Unmodified	_FRFEKRNKI_					0	0	0		ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	MULTI-MSMS	A375_MHC_IP_R1	1	413.64361572265625	3	413.243652	1236.70913	0.55927	0.00023111	-0.61576	-0.00025446	-0.056497	-2.3347E-05	413.2433573184426	21.928	0.65903	21.928	21.454	22.113	0					29	12	3	0	0	0	0.55471	1	5860	5860		16.566	10.332	1	2382800			15394	6632	11177	11263	15023	15023					0.10023893653851701
FRFEKRNKI	9	Unmodified	_FRFEKRNKI_					0	0	0		ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	MULTI-MSMS	A375_MHC_IP_R1	1	413.64373779296875	3	413.243652	1236.70913	0.49328	0.00020385	-0.19441	-8.0337E-05	0.29888	0.00012351	413.2435313757912	22.869	0.75767	22.869	22.572	23.33	0					31	14	4	0	0	0	0.027818	1	6188	6188		70.929	48.154	1	7113700			15395	6632	11177	11263	15024	15024					0.10023893653851701
FRFEKRNKI	9	Unmodified	_FRFEKRNKI_					0	0	0		ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	MULTI-MSMS	A375_MHC_IP_R2	2	413.6434326171875	3	413.243652	1236.70913	-0.29825	-0.00012325	-0.16589	-6.8551E-05	-0.46414	-0.0001918	413.24355420942885	19.98	0.91323	20.59	20.095	21.008	0.61029					45	17	3	0	0	0	0.14922	1	6104	6104		38.615	29.639	1	3903500			15396	6632	11177	11263	15025	15025					0.10023893653851701
FRFEKRNKI	9	Unmodified	_FRFEKRNKI_					0	0	0		ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	MULTI-MATCH	A375_MHC_IP_R2	2		3	413.243652	1236.70913	-0.33268	-0.00013748	-0.16474	-6.8078E-05	-0.49742	-0.00020556	413.24353476406304	22.625	0.15246	23.255	23.164	23.317	0.63014	0.19276	2.7937E-05	NaN	70.929	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1035100			15397	6632	11177	11263							0.10023893653851701
FRFENVNGY	9	Unmodified	_FRFENVNGY_					0	0	0		nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;ENST00000495255.1_1_7:97493514-97498468:-|nuORF	nc|ENSG00000070669|P08243-2|ASNS	nc|ENSG00000070669|P08243-2|ASNS	MULTI-SECPEP	A375_MHC_IP_R1	1	573.761474609375	2	573.272355	1144.53016	-0.14822	-8.497E-05	0.14751	8.4562E-05	-0.0007127	-4.0857E-07	573.2726195586913	62.92	0.61423	62.92	62.66	63.274	0					17	11	2	0	0	0	0.71341	1	22663	22663		18.146	7.3224	1	1040800			15398	1496	11178	11264	15026	15026					-0.03632615704896125
FRFFHGYFFEW	11	Unmodified	_FRFFHGYFFEW_					0	0	0			REV__ENSG00000179387|ENST00000323570|ELMOD2	REV__ENSG00000179387|ENST00000323570|ELMOD2	MSMS	A375_MHC_IP_R2	2	792.255615234375	2	791.866954	1581.71936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.13	1	132.32	131.82	132.82	0.18953								0	0	0	0.16354	1	51978	51978		0.30703	0	1		+		15399	21557	11179	11265	15027	15027					-0.04823543411589526
FRFGSKDDEY	10	Unmodified	_FRFGSKDDEY_					0	0	0		ADGRF1|p.G263R|1|0.27|ENSG00000153292|chr6:47014821-47014821|C/T|missense_variant	ADGRF1|p.G263R|1|0.27|ENSG00000153292|chr6:47014821-47014821|C/T|missense_variant	ADGRF1|p.G263R|1|0.27|ENSG00000153292|chr6:47014821-47014821|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	422.25933837890625	3	421.859532	1262.55677	-0.15493	-6.5361E-05	-0.1086	-4.5816E-05	-0.26354	-0.00011118	421.85940749664513	32.396	0.71227	33.133	32.806	33.518	0.73692					22	13	2	0	0	0	0.70174	1	11562	11562		11.518	2.2741	1	3381000			15400	70	11180	11266	15028	15028					-0.06400971604216465
FRFPKDRAV	9	Unmodified	_FRFPKDRAV_					0	0	0		ENSG00000129028|ENST00000249861|THAP10	ENSG00000129028|ENST00000249861|THAP10	ENSG00000129028|ENST00000249861|THAP10	MULTI-MSMS	A375_MHC_IP_R1	1	379.6172790527344	3	379.217214	1134.62981	0.29145	0.00011052	-0.10982	-4.1647E-05	0.18162	6.8874E-05	379.21715723978906	32.031	0.41133	32.031	31.819	32.231	0					19	7	3	0	0	0	0.093901	1	10324	10324		51.765	35.199	1	4980800			15401	4174	11181	11267	15029	15029					0.06788246699693445
FRFPKDRAV	9	Unmodified	_FRFPKDRAV_					0	0	0		ENSG00000129028|ENST00000249861|THAP10	ENSG00000129028|ENST00000249861|THAP10	ENSG00000129028|ENST00000249861|THAP10	MULTI-MSMS	A375_MHC_IP_R2	2	379.6170959472656	3	379.217214	1134.62981	0.042603	1.6156E-05	-0.13081	-4.9604E-05	-0.088203	-3.3448E-05	379.2170886126364	31.152	0.50909	31.871	31.618	32.128	0.71857					19	9	3	0	0	0	0.034721	1	11006	11006		70.929	51.303	1	4959700			15402	4174	11181	11267	15030	15030					0.06788246699693445
FRFPRQWRL	9	Unmodified	_FRFPRQWRL_					0	0	0		chr14:106482637-106488768|213|33.03|0.49|6.06|+|1|LINC00221,LINC00221|1	chr14:106482637-106488768|213|33.03|0.49|6.06|+|1|LINC00221,LINC00221|1	chr14:106482637-106488768|213|33.03|0.49|6.06|+|1|LINC00221,LINC00221|1	MULTI-MSMS	A375_MHC_IP_R1	1	436.3159484863281	3	435.915758	1304.72544	0.1922	8.3784E-05	-0.049886	-2.1746E-05	0.14232	6.2038E-05	435.91575177737224	69.909	0.81178	69.909	69.631	70.442	0					40	15	4	0	0	0	0.084766	1	25334	25334		53.404	53.404	1	15775000			15403	431	11182	11268	15031	15031					0.08527019610619391
FRFPRQWRL	9	Unmodified	_FRFPRQWRL_					0	0	0		chr14:106482637-106488768|213|33.03|0.49|6.06|+|1|LINC00221,LINC00221|1	chr14:106482637-106488768|213|33.03|0.49|6.06|+|1|LINC00221,LINC00221|1	chr14:106482637-106488768|213|33.03|0.49|6.06|+|1|LINC00221,LINC00221|1	MULTI-MSMS	A375_MHC_IP_R2	2	436.6180114746094	3	435.915758	1304.72544	-0.17497	-7.627E-05	-0.18639	-8.1251E-05	-0.36136	-0.00015752	435.91566123916607	68.865	0.86075	69.6	69.272	70.133	0.73511					44	16	4	0	0	0	0.084766	2	26086	26050;26086		53.404	53.404	1	18260000			15404	431	11182	11268	15032;15033	15033					0.08527019610619391
FRFYRRQIRNW	11	Unmodified	_FRFYRRQIRNW_					0	0	0			REV__ENSG00000101407|ENST00000373447|TTI1	REV__ENSG00000101407|ENST00000373447|TTI1	MULTI-SECPEP	A375_MHC_IP_R2	2	411.6264343261719	4	411.227288	1640.88005	0.051579	2.1211E-05	-1.3906	-0.00057185	-1.339	-0.00055064	411.22667232885794	27.619	0.35349	28.298	28.098	28.452	0.67857					22	6	5	0	0	0	1.0015	1	9493	9493		0.094841	0.094841	1	5700600	+		15405	17169	11183	11269	15034	15034					0.08524224025154581
FRFYRRQIRNW	11	Unmodified	_FRFYRRQIRNW_					0	0	0			REV__ENSG00000101407|ENST00000373447|TTI1	REV__ENSG00000101407|ENST00000373447|TTI1	MULTI-MATCH	A375_MHC_IP_R1	1		4	411.227288	1640.88005	0.017409	7.1591E-06	-1.7233	-0.00070867	-1.7059	-0.00070151	411.22670542424936	28.243	0.40304	28.243	28.088	28.491	0	-0.027341	-0.00022287	NaN	0.094841	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4581400	+		15406	17169	11183	11269							0.08524224025154581
FRGNKEVLK	9	Unmodified	_FRGNKEVLK_					0	0	0		tr|U7STX6|U7STX6_FUSNUCobyricacidsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobQPE=3SV=1	tr|U7STX6|U7STX6_FUSNUCobyricacidsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobQPE=3SV=1	tr|U7STX6|U7STX6_FUSNUCobyricacidsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobQPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	363.629150390625	3	364.217102	1089.62948	0.32836	0.00011959	-0.49653	-0.00018085	-0.16817	-6.1252E-05	364.216829443909	20.584	0.61228	20.584	20.129	20.742	0					13	8	2	0	0	0	0.72623	1	5339	5339		13.615	1.4401	1	1871800			15407	29722	11184	11270	15035	15035					0.0882482697982141
FRGPSGLLVY	10	Unmodified	_FRGPSGLLVY_					0	0	0		ENST00000470741.1_1_22:43015781-43027088:-|nuORF;nc|ENSG00000100243|P00387-2|CYB5R3;ENSG00000100243|ENST00000352397|CYB5R3;nc|ENSG00000100243|P00387-3|CYB5R3	ENST00000470741.1_1_22:43015781-43027088:-|nuORF	ENST00000470741.1_1_22:43015781-43027088:-|nuORF	MSMS	A375_MHC_IP_R2	2	370.2486572265625	3	370.209836	1107.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.037	1	19.64	19.14	20.14	0.60308								0	0	0	0.15451	1	5785	5785		3.3196	0.58445	1				15408	2145	11185	11271	15036	15036					0.05818022231278519
FRGPTVSNI	9	Unmodified	_FRGPTVSNI_					0	0	0		ENST00000424137.2_1_20:34340744-34341539:+|nuORF;ENSG00000197498|ENST00000441448|RPF2	ENST00000424137.2_1_20:34340744-34341539:+|nuORF	ENST00000424137.2_1_20:34340744-34341539:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	496.17132568359375	2	495.771991	989.529429	0.11942	5.9203E-05	-1.6698	-0.00082785	-1.5504	-0.00076864	495.77171503822194	49.033	0.70781	49.033	48.577	49.285	0					19	13	2	0	0	0	0.070665	1	17330	17330		78.728	28.795	1	1784700			15409	11769	11186	11272	15037	15037					0.03424589646044751
FRGSESVSW	9	Unmodified	_FRGSESVSW_					0	0	0			REV__ENSG00000163162|ENST00000295317|RNF149	REV__ENSG00000163162|ENST00000295317|RNF149	MSMS	A375_MHC_IP_R2	2	527.6873168945312	2	527.751256	1053.48796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.863	1	39.638	39.138	40.138	0.77451								0	0	0	0.09265	1	14327	14327		43.772	1.9328	1		+		15410	20342	11187	11273	15038	15038					-0.0366459111326094
FRHDKRVYL	9	Unmodified	_FRHDKRVYL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000571346.1_1_17:1586825-1588116:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R1	1	412.2998352050781	3	411.899885	1232.67783	-0.09116	-3.7549E-05	-0.16762	-6.9042E-05	-0.25878	-0.00010659	411.8998106895855	24.01	0.50859	24.01	23.787	24.296	0					24	9	4	0	0	0	0.019126	1	6718	6718		70.496	56.09	1	24534000			15411	7864	11188	11274	15039	15039					0.07079320619754981
FRHDKRVYL	9	Unmodified	_FRHDKRVYL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000571346.1_1_17:1586825-1588116:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R2	2	412.299560546875	3	411.899885	1232.67783	-0.31849	-0.00013119	-0.11934	-4.9154E-05	-0.43783	-0.00018034	411.89980974113365	23.122	0.55967	23.752	23.47	24.029	0.63014					21	10	3	0	0	0	0.012447	1	7401	7401		85.764	54.129	1	18460000			15412	7864	11188	11274	15040	15040					0.07079320619754981
FRHNYPESI	9	Unmodified	_FRHNYPESI_					0	0	0			REV__nc|ENSG00000104413|Q6NXG1-2|ESRP1	REV__nc|ENSG00000104413|Q6NXG1-2|ESRP1	MULTI-SECPEP	A375_MHC_IP_R2	2	387.44537353515625	3	388.192845	1161.55671	-0.36838	-0.000143	-0.099527	-3.8636E-05	-0.46791	-0.00018164	388.1929883016586	37.991	0.25807	38.765	38.585	38.843	0.77451					6	4	2	0	0	0	0.80332	1	13926	13926		4.897	0	1	1066900	+		15413	17323	11189	11275	15041	15041					-0.017609268135629463
FRHPHIIKL	9	Unmodified	_FRHPHIIKL_					0	0	0		ENSG00000132356|ENST00000397128|PRKAA1;nc|ENSG00000132356|Q13131-2|PRKAA1;ENST00000511248.1_1_5:40777545-40798228:-|nuORF;ENST00000397006.2_1_5:40777312-40798264:-|nuORF;ENSG00000162409|ENST00000371244|PRKAA2	ENSG00000132356|ENST00000397128|PRKAA1;ENSG00000162409|ENST00000371244|PRKAA2	ENSG00000132356|ENST00000397128|PRKAA1	MULTI-MSMS	A375_MHC_IP_R1	1	388.3078918457031	3	387.573221	1159.69783	0.38125	0.00014776	0.010938	4.2394E-06	0.39219	0.000152	387.5731578570312	39.218	1.0655	39.218	38.882	39.948	0					39	20	3	0	0	0	0.10637	2	13329	13329;13456		49.527	25.737	1	6473200			15414	4396;6529	11190	11276	15042;15043	15042					0.12437116350361066
FRHPHIIKL	9	Unmodified	_FRHPHIIKL_					0	0	0		ENSG00000132356|ENST00000397128|PRKAA1;nc|ENSG00000132356|Q13131-2|PRKAA1;ENST00000511248.1_1_5:40777545-40798228:-|nuORF;ENST00000397006.2_1_5:40777312-40798264:-|nuORF;ENSG00000162409|ENST00000371244|PRKAA2	ENSG00000132356|ENST00000397128|PRKAA1;ENSG00000162409|ENST00000371244|PRKAA2	ENSG00000132356|ENST00000397128|PRKAA1	MULTI-MSMS	A375_MHC_IP_R2	2	387.9732666015625	3	387.573221	1159.69783	-0.3363	-0.00013034	0.33235	0.00012881	-0.0039539	-1.5324E-06	387.57331132667366	37.85	0.76881	38.625	38.279	39.047	0.77451					34	14	3	0	0	0	0.068071	2	13850	13850;14031		57.249	30.026	1	8423600			15415	4396;6529	11190	11276	15044;15045	15044					0.12437116350361066
FRHPKQVQL	9	Unmodified	_FRHPKQVQL_					0	0	0		nc|ENSG00000169570|Q8NBA8-2|DTWD2;ENSG00000169570|ENST00000510708|DTWD2	nc|ENSG00000169570|Q8NBA8-2|DTWD2	nc|ENSG00000169570|Q8NBA8-2|DTWD2	MULTI-MSMS	A375_MHC_IP_R1	1	385.2583923339844	3	384.89273	1151.65636	0.27727	0.00010672	-0.16821	-6.4744E-05	0.10906	4.1975E-05	384.8925936542627	25.272	0.50877	25.272	25.053	25.562	0					17	9	2	0	0	0	0.60982	2	7305	7293;7305		14.405	9.5084	1	4007200			15416	7416	11191	11277	15046;15047	15047					0.08659935591026624
FRHPYPTAL	9	Unmodified	_FRHPYPTAL_					0	0	0		nc|ENSG00000148737|Q9NQB0-14|TCF7L2;nc|ENSG00000148737|Q9NQB0-15|TCF7L2;nc|ENSG00000148737|Q9NQB0-10|TCF7L2;nc|ENSG00000148737|Q9NQB0-12|TCF7L2;nc|ENSG00000148737|Q9NQB0-11|TCF7L2;nc|ENSG00000148737|Q9NQB0-13|TCF7L2;nc|ENSG00000148737|Q9NQB0-16|TCF7L2;nc|ENSG00000148737|Q9NQB0-8|TCF7L2;nc|ENSG00000148737|Q9NQB0-9|TCF7L2;nc|ENSG00000148737|Q9NQB0-4|TCF7L2;nc|ENSG00000148737|Q9NQB0-6|TCF7L2;nc|ENSG00000148737|Q9NQB0-2|TCF7L2;nc|ENSG00000148737|Q9NQB0-7|TCF7L2;nc|ENSG00000148737|Q9NQB0-5|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;ENSG00000148737|ENST00000355995|TCF7L2	nc|ENSG00000148737|Q9NQB0-14|TCF7L2	nc|ENSG00000148737|Q9NQB0-14|TCF7L2	MULTI-SECPEP	A375_MHC_IP_R1	1	367.5968017578125	3	367.866181	1100.57671	0.2459	9.0459E-05	-0.76225	-0.00028041	-0.51635	-0.00018995	367.8659771451072	42.083	0.30273	42.083	41.88	42.183	0					9	5	2	0	0	0	0.8028	1	14540	14540		2.4985	2.4985	1	686780			15417	14671	11192	11278	15048	15048					0.03044868917027088
FRIARLPLV	9	Unmodified	_FRIARLPLV_					0	0	0			REV__ENSG00000068878|ENST00000404125|PSME4	REV__ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	A375_MHC_IP_R1	1	362.63763427734375	3	362.237838	1083.69168	0.034706	1.2572E-05	-0.18272	-6.6187E-05	-0.14801	-5.3615E-05	362.237729094041	41.884	0.56115	41.884	41.622	42.183	0					15	10	2	0	0	0	0.57432	1	14492	14492		16.149	16.149	1	2609300	+		15418	16548	11193	11279	15049	15049					0.1531859811882441
FRIARLPLV	9	Unmodified	_FRIARLPLV_					0	0	0			REV__ENSG00000068878|ENST00000404125|PSME4	REV__ENSG00000068878|ENST00000404125|PSME4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	362.237838	1083.69168	0.034706	1.2572E-05	-0.18272	-6.6187E-05	-0.14801	-5.3615E-05	362.237729094041	41.884	0.56115	41.884	41.622	42.183	0	0.12725	-4.9484E-05	NaN	16.149	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2609300	+		15419	16548	11193	11279							0.1531859811882441
FRIARLPLV	9	Unmodified	_FRIARLPLV_					0	0	0			REV__ENSG00000068878|ENST00000404125|PSME4	REV__ENSG00000068878|ENST00000404125|PSME4	MULTI-MATCH	A375_MHC_IP_R2	2		3	362.237838	1083.69168	-0.34257	-0.00012409	-0.066638	-2.4139E-05	-0.40921	-0.00014823	362.23766583505267	40.855	0.45906	41.63	41.335	41.794	0.77451	-0.12725	7.6662E-05	NaN	16.149	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1910000	+		15420	16548	11193	11279							0.1531859811882441
FRIPGTQSL	9	Unmodified	_FRIPGTQSL_					0	0	0		ENST00000403627.7_1_17:71205816-71223389:-|nuORF	ENST00000403627.7_1_17:71205816-71223389:-|nuORF	ENST00000403627.7_1_17:71205816-71223389:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	510.1869201660156	2	509.787641	1017.56073	-0.44066	-0.00022464	2.054	0.0010471	1.6133	0.00082243	509.78745525721786	73.866	1.3678	73.866	73.336	74.704	0					54	26	3	0	0	0	0.061442	1	26855	26855		82.529	40.435	1	5454000			15421	11573	11194	11280	15050	15050					0.052651626801548446
FRIPWKHGL	9	Unmodified	_FRIPWKHGL_					0	0	0		ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3;IRF3|p.G225Afs*28|1|0.26|ENSG00000126456|chr19:49662256-49662256|C/-|frameshift_variant;nc|ENSG00000126456|Q14653-2|IRF3;nc|ENSG00000126456|Q14653-5|IRF3	ENSG00000126456|ENST00000377139|IRF3	ENSG00000126456|ENST00000377139|IRF3	MULTI-MSMS	A375_MHC_IP_R2	2	385.6255798339844	3	385.225821	1152.65563	-0.21613	-8.3259E-05	0.26136	0.00010068	0.045229	1.7423E-05	385.56035017122065	55.663	0.45662	56.414	56.237	56.694	0.75075					19	8	3	0	0	0	0.12748	2	21064	21023;21064		45.74	34.841	1	3410200			15422	4042	11195	11281	15051;15052	15052					0.08541140941974845
FRIRFYFWNWH	11	Unmodified	_FRIRFYFWNWH_					0	0	0		TYK2|p.R110W|1|0.24|ENSG00000105397|chr19:10368192-10368192|G/A|missense_variant	TYK2|p.R110W|1|0.24|ENSG00000105397|chr19:10368192-10368192|G/A|missense_variant	TYK2|p.R110W|1|0.24|ENSG00000105397|chr19:10368192-10368192|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	835.8919067382812	2	836.42022	1670.82589	-0.279	-0.00023336	-4.2199	-0.0035296	-4.4989	-0.0037629	836.9177602083982	118.37	0.25367	118.37	118.17	118.42	0					6	4	2	0	0	0	1.0014	1	43491	43491		0.35063	0.35063	1	32417000			15423	30102	11196	11282	15053	15053					0.01730631873601851
FRIRRMYL	8	Unmodified	_FRIRRMYL_					0	0	0			REV__ENSG00000204480|ENST00000376101|PRAMEF19	REV__ENSG00000204480|ENST00000376101|PRAMEF19	MSMS	A375_MHC_IP_R1	1	385.6446533203125	3	385.558694	1153.65425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.718	1	56.718	56.218	57.218	0								0	0	0	0.16876	1	20325	20325		6.7232	1.8262	1		+		15424	22518	11197	11283	15054	15054					0.08357183581574645
FRIRRMYL	8	Unmodified	_FRIRRMYL_					0	0	0			REV__ENSG00000204480|ENST00000376101|PRAMEF19	REV__ENSG00000204480|ENST00000376101|PRAMEF19	MSMS	A375_MHC_IP_R1	1	385.6260986328125	3	385.558694	1153.65425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.869	1	56.869	56.369	57.369	0								0	0	0	0.16876	1	20382	20382		3.5965	0	1		+		15425	22518	11197	11283	15055	15055					0.08357183581574645
FRKFVKDCE	9	Unmodified	_FRKFVKDCE_					0	0	0			REV__nc|ENSG00000160352|Q96N38-3|ZNF714	REV__nc|ENSG00000160352|Q96N38-3|ZNF714	MSMS	A375_MHC_IP_R2	2	391.2332458496094	3	391.202465	1170.58556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.18	1	18.783	18.283	19.283	0.60308								0	0	0	0.15486	1	5394	5394		0.23584	0	1		+		15426	20166	11198	11284	15056	15056					0.007094744911910311
FRKIYGKDNY	10	Unmodified	_FRKIYGKDNY_					0	0	0		tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	MSMS	A375_MHC_IP_R2	2	435.17999267578125	3	435.2313	1302.67207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.494	1	33.231	32.731	33.731	0.73692								0	0	0	0.15451	1	11572	11572		3.3196	0	1				15427	29702	11199	11285	15057	15057					0.0328417731745958
FRKPGEKTF	9	Unmodified	_FRKPGEKTF_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000566277.2_1_16:69791529-69791679:-|nuORF;ENST00000486613.6_1_X:70504267-70513876:+|nuORF	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MSMS	A375_MHC_IP_R1	1	371.2491760253906	3	370.541586	1108.60293	0.28283	0.0001048	0.10552	3.9101E-05	0.38835	0.0001439	370.5416085056736	19.951	1.1672	19.951	19.42	20.587	0					82	22	5	0	0	0	0.0099638	3	5060	4928;5060;5152		102.55	75.325	1	95501000			15428	5662	11200	11286	15058;15059;15060	15059					0.05297138088508291
FRKPGEKTF	9	Unmodified	_FRKPGEKTF_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000566277.2_1_16:69791529-69791679:-|nuORF;ENST00000486613.6_1_X:70504267-70513876:+|nuORF	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MSMS	A375_MHC_IP_R1	1	370.94171142578125	3	370.541586	1108.60293	0.66096	0.00024491	-0.10069	-3.731E-05	0.56027	0.0002076	370.5415206001397	22.139	1.0168	22.139	21.706	22.723	0					26	19	2	0	0	0	0.12748	1	5916	5916		36.395	15.814	1	12415000			15429	5662	11200	11286	15061	15061					0.05297138088508291
FRKPGEKTF	9	Unmodified	_FRKPGEKTF_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000566277.2_1_16:69791529-69791679:-|nuORF;ENST00000486613.6_1_X:70504267-70513876:+|nuORF	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MSMS	A375_MHC_IP_R2	2	370.9413146972656	3	370.541586	1108.60293	0.080861	2.9962E-05	-0.43724	-0.00016202	-0.35638	-0.00013205	370.5414170767887	18.955	0.38097	19.559	19.452	19.833	0.60308					14	7	2	0	0	0	0.0086813	1	5712	5712		168.9	109.53	1	206790000			15430	5662	11200	11286	15062	15062					0.05297138088508291
FRKPGEKTF	9	Unmodified	_FRKPGEKTF_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000566277.2_1_16:69791529-69791679:-|nuORF;ENST00000486613.6_1_X:70504267-70513876:+|nuORF	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-SECPEP	A375_MHC_IP_R2	2	370.9415283203125	3	370.541586	1108.60293	0.0096488	3.5753E-06	0.28507	0.00010563	0.29472	0.00010921	370.541621066159	21.59	0.6637	22.21	21.979	22.643	0.61932					20	12	2	0	0	0	0.71813	1	6815	6815		20.871	17.59	1	7319900			15431	5662	11200	11286	15063	15063					0.05297138088508291
FRKPHCLSPKS	11	Unmodified	_FRKPHCLSPKS_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|18|1|sense	L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|18|1|sense	L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|18|1|sense	MULTI-MSMS	A375_MHC_IP_R2	2	434.2508239746094	3	433.90453	1298.69176	-0.2785	-0.00012084	1.622	0.00070379	1.3435	0.00058295	433.9053419438877	30.699	0.30154	31.418	31.266	31.567	0.71857					7	5	2	0	0	0	0.7353	1	10829	10829		3.8459	0.25885	1	712930			15432	14268	11201	11287	15064	15064					0.05436230056511704
FRKPQRSFF	9	Unmodified	_FRKPQRSFF_					0	0	0		nc|ENSG00000152683|Q6NXT4-3|SLC30A6;ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6	nc|ENSG00000152683|Q6NXT4-3|SLC30A6	nc|ENSG00000152683|Q6NXT4-3|SLC30A6	MULTI-SECPEP	A375_MHC_IP_R1	1	405.2926940917969	3	404.89273	1211.65636	-0.47184	-0.00019104	0.43515	0.00017619	-0.036687	-1.4854E-05	404.89283941454477	34.228	0.6072	34.228	33.95	34.557	0					19	11	2	0	0	0	0.601	1	11278	11278		30.431	20.116	1	4378600			15433	5979	11202	11288	15065	15065					0.0589993559103732
FRKPQRSFF	9	Unmodified	_FRKPQRSFF_					0	0	0		nc|ENSG00000152683|Q6NXT4-3|SLC30A6;ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6	nc|ENSG00000152683|Q6NXT4-3|SLC30A6	nc|ENSG00000152683|Q6NXT4-3|SLC30A6	MULTI-MSMS	A375_MHC_IP_R2	2	405.2925109863281	3	404.89273	1211.65636	-0.22065	-8.9338E-05	-0.16739	-6.7776E-05	-0.38804	-0.00015711	404.8925639508146	33.206	0.61064	33.959	33.737	34.348	0.75225					23	11	3	0	0	0	0.10518	1	11890	11890		49.742	25.941	1	2813200			15434	5979	11202	11288	15066	15066					0.0589993559103732
FRKYRFILFKR	11	Unmodified	_FRKYRFILFKR_					0	0	0		ENSG00000167470|ENST00000682408|MIDN	ENSG00000167470|ENST00000682408|MIDN	ENSG00000167470|ENST00000682408|MIDN	MSMS	A375_MHC_IP_R2	2	787.478515625	2	787.477537	1572.94052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.707	1	73.443	72.943	73.943	0.73541								0	0	0	0.16354	1	27595	27595		0.30703	0.30703	1				15435	7186	11203	11289	15067	15067					0.1769694135550708
FRLDARTGIL	10	Unmodified	_FRLDARTGIL_					0	0	0		ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	A375_MHC_IP_R1	1	387.13763427734375	3	387.89614	1160.66659	0.2685	0.00010415	-1.9428	-0.00075361	-1.6743	-0.00064946	387.895150235138	33.785	0.3526	33.785	33.597	33.95	0					9	6	2	0	0	0	0.64716	1	11082	11082		7.4771	0	1	1828700			15436	1838	11204	11290	15068	15068					0.09268498525625546
FRLFPRTRWIY	11	Unmodified	_FRLFPRTRWIY_					0	0	0		ENST00000371117.7_1_6:51720856-51735327:-|nuORF	ENST00000371117.7_1_6:51720856-51735327:-|nuORF	ENST00000371117.7_1_6:51720856-51735327:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	388.9638977050781	4	389.472761	1553.86194	-0.57534	-0.00022408	-0.82026	-0.00031947	-1.3956	-0.00054355	389.47236307400937	24.926	0.7642	25.57	25.263	26.028	0.64368					24	14	2	0	0	0	1.0012	1	8207	8207		0.40827	0.32491	1	2120100			15437	11166	11205	11291	15069	15069					0.10716089050447408
FRLLAKIRWCL	11	Unmodified	_FRLLAKIRWCL_					0	0	0			REV__ENST00000508736.1_1_12:49994556-49994850:+|nuORF	REV__ENST00000508736.1_1_12:49994556-49994850:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	709.154541015625	2	709.926292	1417.83803	-0.54942	-0.00039005	0.64041	0.00045464	0.090995	6.46E-05	709.9266253319913	143.14	0.86017	143.17	142.64	143.5	0.030731					51	16	4	0	0	0	1.0014	1	55820	55820		1.3295	1.3295	1	16962000	+		15438	25584	11206	11292	15070	15070					0.14582532292433825
FRLLKKRM	8	Unmodified	_FRLLKKRM_					0	0	0		tr|U7SKB1|U7SKB1_FUSNUCRISPR-associatedhelicasecas3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02172PE=3SV=1	tr|U7SKB1|U7SKB1_FUSNUCRISPR-associatedhelicasecas3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02172PE=3SV=1	tr|U7SKB1|U7SKB1_FUSNUCRISPR-associatedhelicasecas3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02172PE=3SV=1	MSMS	A375_MHC_IP_R2	2	546.3491821289062	2	546.347146	1090.67974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.783	1	19.386	18.886	19.886	0.60308								0	0	0	0.16876	1	5605	5605		0	0	1				15439	29470	11207	11293	15071	15071					0.13802658104009424
FRLNSHLTEHQ	11	Unmodified	_FRLNSHLTEHQ_					0	0	0		nc|ENSG00000171817|Q8NDQ6-2|ZNF540;nc|ENSG00000171817|Q8NDQ6-4|ZNF540;ENST00000589285.1_1_19:38102250-38104161:+|nuORF;ENSG00000171817|ENST00000316433|ZNF540	nc|ENSG00000171817|Q8NDQ6-2|ZNF540	nc|ENSG00000171817|Q8NDQ6-2|ZNF540	MULTI-SECPEP	A375_MHC_IP_R2	2	691.7738037109375	2	691.3522	1380.68985	-0.50229	-0.00034726	0.83828	0.00057955	0.33599	0.00023229	691.3526738883266	85.79	0.60934	86.527	86.239	86.848	0.73601					35	11	4	0	0	0	0.9881	1	32635	32635		13.615	2.8154	1	20830000			15440	7643	11208	11294	15072	15072					0.01472892572269302
FRLQDDTGSF	10	Unmodified	_FRLQDDTGSF_					0	0	0			REV__CHAT|p.P226S|1|0.38|ENSG00000070748|chr10:49620591-49620591|C/T|missense_variant	REV__CHAT|p.P226S|1|0.38|ENSG00000070748|chr10:49620591-49620591|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	593.6801147460938	2	593.280377	1184.5462	-0.42697	-0.00025331	0.34554	0.000205	-0.08143	-4.8311E-05	593.2803973063204	43.281	1.1117	44.054	43.523	44.634	0.7724					36	21	3	0	0	0	0.60608	1	16182	16182		20.415	1.0526	1	10071000	+		15441	15657	11209	11295	15073	15073					-0.03868954258700796
FRLRPLRF	8	Unmodified	_FRLRPLRF_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	MULTI-MSMS	A375_MHC_IP_R2	2	369.2977294921875	3	368.897816	1103.67162	0.2061	7.6029E-05	-0.38396	-0.00014164	-0.17787	-6.5615E-05	368.8976474425491	44.51	0.457	45.279	45.086	45.543	0.76909					20	8	3	0	0	0	0.77583	1	16627	16627		10.074	0	1	2774500			15442	2084	11210	11296	15074	15074					0.12392847178875854
FRLTRWRTRYK	11	Unmodified	_FRLTRWRTRYK_					0	0	0		ENSG00000152034|ENST00000281806|MCHR2	ENSG00000152034|ENST00000281806|MCHR2	ENSG00000152034|ENST00000281806|MCHR2	MSMS	A375_MHC_IP_R2	2	791.9596557617188	2	791.957501	1581.90045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.943	1	19.547	19.047	20.047	0.60308								0	0	0	0.16355	1	5691	5691		0.26902	0.26902	1				15443	5939	11211	11297	15075	15075					0.13277394684951105
FRMPVLREY	9	Unmodified	_FRMPVLREY_					0	0	0		ENST00000603865.1_1_11:75507249-75507624:+|nuORF;ENST00000603363.5_1_11:75507249-75511550:+|nuORF;nc|ENSG00000062282|Q96PD7-2|DGAT2;ENSG00000062282|ENST00000228027|DGAT2	ENST00000603865.1_1_11:75507249-75507624:+|nuORF	ENST00000603865.1_1_11:75507249-75507624:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	404.61834716796875	3	404.218226	1209.63285	-0.36484	-0.00014747	0.83275	0.00033661	0.46791	0.00018914	404.2185923284822	68.821	0.70889	68.821	68.412	69.121	0					28	13	3	0	0	0	0.22164	1	24966	24966		36.395	29.293	1	1985800			15444	1327	11212	11298	15076	15076					0.03641753762212829
FRMPVLREY	9	Unmodified	_FRMPVLREY_					0	0	0		ENST00000603865.1_1_11:75507249-75507624:+|nuORF;ENST00000603363.5_1_11:75507249-75511550:+|nuORF;nc|ENSG00000062282|Q96PD7-2|DGAT2;ENSG00000062282|ENST00000228027|DGAT2	ENST00000603865.1_1_11:75507249-75507624:+|nuORF	ENST00000603865.1_1_11:75507249-75507624:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	404.6182861328125	3	404.218226	1209.63285	0.11028	4.4577E-05	-0.10963	-4.4316E-05	0.00064549	2.6092E-07	404.2181340452087	68.001	0.66148	68.736	68.459	69.121	0.73511					23	12	3	0	0	0	0.22164	1	25775	25775		36.395	30.992	1	2665600			15445	1327	11212	11298	15077	15077					0.03641753762212829
FRMRREKKH	9	Unmodified	_FRMRREKKH_					0	0	0			REV__nc|ENSG00000141837|O00555-5|CACNA1A	REV__nc|ENSG00000141837|O00555-5|CACNA1A	MULTI-SECPEP	A375_MHC_IP_R2	2	429.2908935546875	3	429.912019	1286.71423	-0.33996	-0.00014615	-0.01608	-6.9129E-06	-0.35604	-0.00015307	429.9118708588478	44.767	0.25454	45.536	45.34	45.594	0.76909					6	4	2	0	0	0	0.81368	1	16692	16692		2.2828	1.5851	1	447930	+		15446	19286	11213	11299	15078	15078					0.08233874244797335
FRMRREKKHFF	11	Unmodified	_FRMRREKKHFF_					0	0	0			REV__nc|ENSG00000141837|O00555-5|CACNA1A	REV__nc|ENSG00000141837|O00555-5|CACNA1A	MULTI-MSMS	A375_MHC_IP_R1	1	791.8328247070312	2	791.432804	1580.85106	-0.44158	-0.00034948	0.81938	0.00064848	0.3778	0.000299	791.4335195701257	64.057	0.65844	64.057	63.735	64.393	0					33	12	4	0	0	0	0.73378	2	23131	23121;23131		5.2969	4.9899	1	9980600	+		15447	19286	11214	11300	15079;15080	15080					0.08386363404497388
FRMRREKKHFF	11	Unmodified	_FRMRREKKHFF_					0	0	0			REV__nc|ENSG00000141837|O00555-5|CACNA1A	REV__nc|ENSG00000141837|O00555-5|CACNA1A	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	791.432804	1580.85106	-0.44158	-0.00034948	0.81938	0.00064848	0.3778	0.000299	791.4335195701257	64.057	0.65844	64.057	63.735	64.393	0	0.027596	-8.2915E-05	NaN	5.2969	33	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9980600	+		15448	19286	11214	11300							0.08386363404497388
FRMRREKKHFF	11	Unmodified	_FRMRREKKHFF_					0	0	0			REV__nc|ENSG00000141837|O00555-5|CACNA1A	REV__nc|ENSG00000141837|O00555-5|CACNA1A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	791.432804	1580.85106	-0.9205	-0.00072852	0.91742	0.00072608	-0.0030827	-2.4397E-06	791.4335734040359	63.261	0.71178	64.002	63.632	64.344	0.74073	-0.027596	7.2274E-05	NaN	5.2969	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8072800	+		15449	19286	11214	11300							0.08386363404497388
FRNEKWKSQ	9	Unmodified	_FRNEKWKSQ_					0	0	0			REV__tr|U7SWY0|U7SWY0_FUSNUAmidohydrolase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01211PE=4SV=1	REV__tr|U7SWY0|U7SWY0_FUSNUAmidohydrolase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01211PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	408.6153564453125	3	408.215761	1221.62546	-0.20489	-8.3639E-05	-0.9163	-0.00037405	-1.1212	-0.00045769	408.21546175613673	35.003	0.60677	35.766	35.525	36.132	0.76338					21	11	3	0	0	0	0.62591	1	12694	12694		13.615	1.4401	1	3035200	+		15450	28614	11215	11301	15081	15081					0.02350737486131038
FRNKDEKYN	9	Unmodified	_FRNKDEKYN_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MSMS	A375_MHC_IP_R1	1	405.6032409667969	3	405.203522	1212.58874	-0.42834	-0.00017357	-0.44306	-0.00017953	-0.8714	-0.00035309	405.20327183427327	19.83	0.71115	19.83	19.521	20.232	0					31	13	4	0	0	0	0.41409	1	5013	5013		17.443	0.87677	1	3389000			15451	3678	11216	11302	15082	15082					-0.009055591304331756
FRNPKTSFY	9	Unmodified	_FRNPKTSFY_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL;AGL|p.D1232Vfs*10|1|0.09|ENSG00000162688|chr1:99902788-99902789|-/TGAAAATATAT|frameshift_variant	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-MSMS	A375_MHC_IP_R1	1	387.6015930175781	3	387.201341	1158.58219	0.16063	6.2195E-05	0.25787	9.9849E-05	0.4185	0.00016204	387.2014151492437	34.362	1.0621	34.362	33.748	34.81	0					28	12	3	0	0	0	0.13728	1	11332	11332		43.982	34.438	1	11377000			15452	6577	11217	11303	15083	15083					0.009245477088597909
FRNPKTSFY	9	Unmodified	_FRNPKTSFY_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL;AGL|p.D1232Vfs*10|1|0.09|ENSG00000162688|chr1:99902788-99902789|-/TGAAAATATAT|frameshift_variant	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-SECPEP	A375_MHC_IP_R2	2	387.6011047363281	3	387.201341	1158.58219	-0.62691	-0.00024274	0.55869	0.00021632	-0.068227	-2.6417E-05	387.20146856487986	33.571	0.7083	34.323	34.095	34.803	0.75225					32	13	4	0	0	0	0.69179	1	12040	12040		21.59	21.59	1	12183000			15453	6577	11217	11303	15084	15084					0.009245477088597909
FRNPLKVLL	9	Unmodified	_FRNPLKVLL_					0	0	0		ENSG00000153339|ENST00000283351|TRAPPC8;nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8;ENST00000578252.1_1_18:29450325-29450937:-|nuORF	ENSG00000153339|ENST00000283351|TRAPPC8	ENSG00000153339|ENST00000283351|TRAPPC8	MULTI-MSMS	A375_MHC_IP_R1	1	367.63787841796875	3	367.237726	1098.69135	0.32037	0.00011765	0.1767	6.489E-05	0.49707	0.00018254	367.2377380741126	88.27	0.7133	88.27	87.848	88.561	0					20	13	2	0	0	0	0.095851	1	32415	32415		51.415	29.825	1	1803800			15454	6027	11218	11304	15085	15085					0.14595178399008546
FRNPLKVLL	9	Unmodified	_FRNPLKVLL_					0	0	0		ENSG00000153339|ENST00000283351|TRAPPC8;nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8;ENST00000578252.1_1_18:29450325-29450937:-|nuORF	ENSG00000153339|ENST00000283351|TRAPPC8	ENSG00000153339|ENST00000283351|TRAPPC8	MULTI-SECPEP	A375_MHC_IP_R2	2	367.97222900390625	3	367.237726	1098.69135	0.26693	9.8028E-05	-0.025051	-9.1997E-06	0.24188	8.8828E-05	367.23772671741864	87.036	0.65972	87.769	87.407	88.067	0.733					21	12	2	0	0	0	0.47674	1	33123	33123		29.841	14.592	1	2577400			15455	6027	11218	11304	15086	15086					0.14595178399008546
FRNQIVREL	9	Unmodified	_FRNQIVREL_					0	0	0		nc|ENSG00000148120|Q8N6M6-3|AOPEP;nc|ENSG00000148120|Q8N6M6-4|AOPEP;nc|ENSG00000148120|Q8N6M6-2|AOPEP;ENSG00000148120|ENST00000375315|AOPEP	nc|ENSG00000148120|Q8N6M6-3|AOPEP	nc|ENSG00000148120|Q8N6M6-3|AOPEP	MULTI-SECPEP	A375_MHC_IP_R2	2	391.5961608886719	3	392.22789	1173.66184	-0.061111	-2.397E-05	-0.50718	-0.00019893	-0.56829	-0.0002229	392.2276799605625	43.304	0.25366	44.076	43.876	44.13	0.7724					10	4	3	0	0	0	0.7905	1	16111	16111		8.4443	1.3426	1	1535600			15456	5714	11219	11305	15087	15087					0.08195614382839267
FRNRVLYW	8	Unmodified	_FRNRVLYW_					0	0	0		ENST00000559471.5_1_15:49283540-49283630:-|nuORF	ENST00000559471.5_1_15:49283540-49283630:-|nuORF	ENST00000559471.5_1_15:49283540-49283630:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	577.7164306640625	2	577.3169	1152.61925	-0.0041957	-2.4222E-06	-0.049724	-2.8707E-05	-0.05392	-3.1129E-05	577.3166504497907	35.453	0.61164	35.453	35.167	35.778	0					23	11	3	0	0	0	0.97144	1	11795	11795		14.582	2.0501	1	5968400			15457	13480	11220	11306	15088	15088					0.049042640452626074
FRNVLQTR	8	Unmodified	_FRNVLQTR_					0	0	0		MGAM|p.S1605F|1|0.52|ENSG00000257335|chr7:142095608-142095608|C/T|missense_variant	MGAM|p.S1605F|1|0.52|ENSG00000257335|chr7:142095608-142095608|C/T|missense_variant	MGAM|p.S1605F|1|0.52|ENSG00000257335|chr7:142095608-142095608|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	517.6979370117188	2	517.298707	1032.58286	-0.87693	-0.00045363	-1.1286	-0.00058381	-2.0055	-0.0010374	517.2982900532218	139.95	0.45898	139.95	139.78	140.23	0					15	8	3	0	0	0	0.7779	1	53775	53775		2.5775	0	1	1847300			15458	14383	11221	11307	15089	15089					0.06787387148551716
FRNWRRWYRSF	11	Unmodified	_FRNWRRWYRSF_					0	0	0			REV__CACNA1C|p.P1597Qfs*32|1|0.14|ENSG00000151067|chr12:2668954-2668961|CCTCTGAA/-|frameshift_variant	REV__CACNA1C|p.P1597Qfs*32|1|0.14|ENSG00000151067|chr12:2668954-2668961|CCTCTGAA/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	558.6187744140625	3	558.623525	1672.84875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.781	1	87.514	87.014	88.014	0.733								0	0	0	0.16351	1	33002	33002		0.45452	0.37117	1		+		15459	15548	11222	11308	15090	15090					0.03923650991055183
FRNYDNITV	9	Unmodified	_FRNYDNITV_					0	0	0		nc|ENSG00000108231|O95970-2|LGI1	nc|ENSG00000108231|O95970-2|LGI1	nc|ENSG00000108231|O95970-2|LGI1	MULTI-MSMS	A375_MHC_IP_R2	2	572.1863403320312	2	571.285463	1140.55637	-0.61906	-0.00035366	-0.24404	-0.00013942	-0.8631	-0.00049308	571.2851659703277	34.228	0.30675	34.98	34.853	35.16	0.75225					10	5	2	0	0	0	0.60101	1	12341	12341		14.838	1.7958	1	6109600			15460	14534	11223	11309	15091	15091					-0.008283465334443463
FRPIPLLDP	9	Unmodified	_FRPIPLLDP_					0	0	0			REV__LAT|p.S84F|1|0.21|ENSG00000213658|chr16:28986387-28986387|C/T|missense_variant	REV__LAT|p.S84F|1|0.21|ENSG00000213658|chr16:28986387-28986387|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	1066.927734375	1	1067.62479	1066.61752	-0.42225	-0.00045081	-0.60437	-0.00064524	-1.0266	-0.001096	1067.6247642687763	122.76	2.3713	122.76	121.97	124.34	0					87	46	2	0	0	0	0.76827	1	45555	45555		10.824	2.2306	1	2326200000	+		15461	26916	11224	11310	15092	15092					0.08687210236666942
FRPIPLLDP	9	Unmodified	_FRPIPLLDP_					0	0	0			REV__LAT|p.S84F|1|0.21|ENSG00000213658|chr16:28986387-28986387|C/T|missense_variant	REV__LAT|p.S84F|1|0.21|ENSG00000213658|chr16:28986387-28986387|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	1067.62479	1066.61752	0.066398	7.0889E-05	-1.3363	-0.0014267	-1.2699	-0.0013558	1067.6239634910125	122.44	3.29	122.81	121.91	125.2	0.37661	0.024654	-0.00035943	NaN	10.824	89	59	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2063599999.9999998	+		15462	26916	11224	11310							0.08687210236666942
FRPLHIEEYK	10	Unmodified	_FRPLHIEEYK_					0	0	0			REV__ENSG00000196900|ENST00000357147|TEX43	REV__ENSG00000196900|ENST00000357147|TEX43	MSMS	A375_MHC_IP_R1	1	444.5823059082031	3	444.575067	1330.70337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.455	1	33.455	32.955	33.955	0								0	0	0	0.15531	1	10923	10923		1.7423	0	1		+		15463	22236	11225	11311	15093	15093					0.051247503515014614
FRPPGTSDL	9	Unmodified	_FRPPGTSDL_					0	0	0		nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1;PATZ1|p.S399Yfs*11|1|0.06|ENSG00000100105|chr22:31344407-31344408|-/TGTAATATAT|frameshift_variant;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-4|PATZ1	nc|ENSG00000100105|Q9HBE1-3|PATZ1;nc|ENSG00000100105|Q9HBE1-4|PATZ1	nc|ENSG00000100105|Q9HBE1-3|PATZ1	MULTI-MSMS	A375_MHC_IP_R1	1	495.666748046875	2	495.256174	988.497795	-0.053376	-2.6435E-05	0.2232	0.00011054	0.16982	8.4105E-05	495.25640929691866	49.537	0.91584	49.537	49.134	50.049	0					32	17	3	0	0	0	0.11629	1	17483	17483		47.749	9.7747	1	3109800			15464	2119;14505	11226	11312	15094	15094					0.0030859689210274155
FRPPGTSDL	9	Unmodified	_FRPPGTSDL_					0	0	0		nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1;PATZ1|p.S399Yfs*11|1|0.06|ENSG00000100105|chr22:31344407-31344408|-/TGTAATATAT|frameshift_variant;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-4|PATZ1	nc|ENSG00000100105|Q9HBE1-3|PATZ1;nc|ENSG00000100105|Q9HBE1-4|PATZ1	nc|ENSG00000100105|Q9HBE1-3|PATZ1	MULTI-MSMS	A375_MHC_IP_R2	2	495.6664733886719	2	495.256174	988.497795	-0.59217	-0.00029327	0.25516	0.00012637	-0.337	-0.0001669	495.2563844339812	48.907	0.86575	49.664	49.18	50.046	0.75737					24	16	2	0	0	0	0.11629	1	18246	18246		47.749	7.7914	1	2952600			15465	2119;14505	11226	11312	15095	15095					0.0030859689210274155
FRPPITQEI	9	Unmodified	_FRPPITQEI_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.T2707Mfs*5|1|0.21|ENSG00000196367|chr7:98976664-98976688|CGCTGATGTTGGAGCACCAGGCTTT/-|frameshift_variant;TRRAP|p.I1891Sfs*37|1|0.32|ENSG00000196367|chr7:98953393-98953393|T/-|frameshift_variant;TRRAP|p.H152Y|1|0.25|ENSG00000196367|chr7:98895767-98895767|C/T|missense_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2083129882812	2	550.808574	1099.60259	-0.91795	-0.00050561	0.46997	0.00025886	-0.44798	-0.00024675	550.8087825996697	67.737	1.2675	67.737	67.399	68.666	0					60	24	4	0	0	0	0.011066	1	24495	24495		137.42	82.65	1	25549000			15466	9031	11227	11313	15096	15096					0.056777183686335775
FRPPITQEI	9	Unmodified	_FRPPITQEI_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.T2707Mfs*5|1|0.21|ENSG00000196367|chr7:98976664-98976688|CGCTGATGTTGGAGCACCAGGCTTT/-|frameshift_variant;TRRAP|p.I1891Sfs*37|1|0.32|ENSG00000196367|chr7:98953393-98953393|T/-|frameshift_variant;TRRAP|p.H152Y|1|0.25|ENSG00000196367|chr7:98895767-98895767|C/T|missense_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	A375_MHC_IP_R2	2	550.732666015625	2	550.808574	1099.60259	-0.85102	-0.00046875	0.31874	0.00017557	-0.53227	-0.00029318	550.808646376104	66.886	1.1703	67.623	67.24	68.41	0.73631					55	22	4	0	0	0	0.11629	1	25461	25461		47.749	47.749	1	37574000			15467	9031	11227	11313	15097	15097					0.056777183686335775
FRPPKIVPR	9	Unmodified	_FRPPKIVPR_					0	0	0		PCDH20|p.E425K|2|0.2|ENSG00000280165|chr13:61412826-61412826|C/T|missense_variant	PCDH20|p.E425K|2|0.2|ENSG00000280165|chr13:61412826-61412826|C/T|missense_variant	PCDH20|p.E425K|2|0.2|ENSG00000280165|chr13:61412826-61412826|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	370.6327209472656	3	370.569588	1108.68693	-0.047681	-1.7669E-05	1.0134	0.00037552	0.96567	0.00035785	370.9046506194751	29.677	2.8751	29.677	29.098	31.973	0					78	56	2	0	0	0	0.69674	2	9679	9404;9679		4.5289	2.4985	1	154390000			15468	15120	11228	11314	15098;15099	15099					0.13693713976090294
FRPPQPQYL	9	Unmodified	_FRPPQPQYL_					0	0	0		ENST00000358043.5_1_14:23236533-23237219:+|nuORF	ENST00000358043.5_1_14:23236533-23237219:+|nuORF	ENST00000358043.5_1_14:23236533-23237219:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	573.7091064453125	2	573.308741	1144.60293	-0.24634	-0.00014123	0.63935	0.00036654	0.39301	0.00022532	573.3095348295936	64.081	1.4258	64.081	63.529	64.954	0					39	27	3	0	0	0	0.14858	1	23160	23160		54.774	18.729	1	3075600			15469	10991	11229	11315	15100	15100					0.036411380885283506
FRPPQPQYL	9	Unmodified	_FRPPQPQYL_					0	0	0		ENST00000358043.5_1_14:23236533-23237219:+|nuORF	ENST00000358043.5_1_14:23236533-23237219:+|nuORF	ENST00000358043.5_1_14:23236533-23237219:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	573.6676635742188	2	573.308741	1144.60293	-0.18801	-0.00010779	0.14249	8.1692E-05	-0.045518	-2.6096E-05	573.3089881639177	63.315	1.2181	64.055	63.582	64.8	0.74022					45	23	3	0	0	0	0.20451	1	24026	24026		64.236	39.562	1	2857800			15470	10991	11229	11315	15101	15101					0.036411380885283506
FRPYAKHWL	9	Unmodified	_FRPYAKHWL_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	A375_MHC_IP_R1	1	407.3082275390625	3	406.557459	1216.65055	0.014331	5.8263E-06	0.126	5.1225E-05	0.14033	5.7051E-05	406.5574151566879	44.381	0.46034	44.381	44.216	44.676	0					17	8	3	0	0	0	0.35487	1	15500	15500		27.223	11.975	1	1792900			15471	9866	11230	11316	15102	15102					0.05088837079370023
FRPYAKHWL	9	Unmodified	_FRPYAKHWL_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	A375_MHC_IP_R2	2	407.31146240234375	3	406.557459	1216.65055	0.14922	6.0669E-05	-0.23735	-9.6496E-05	-0.088123	-3.5827E-05	406.8917160966075	43.312	0.35522	44.084	43.876	44.231	0.7724					16	6	3	0	0	0	0.73363	1	16190	16190		7.1017	0	1	2719900			15472	9866	11230	11316	15103	15103					0.05088837079370023
FRQDGRLLV	9	Unmodified	_FRQDGRLLV_					0	0	0		ENSG00000164338|ENST00000296792|UTP15;nc|ENSG00000164338|Q8TED0-3|UTP15	ENSG00000164338|ENST00000296792|UTP15	ENSG00000164338|ENST00000296792|UTP15	MULTI-SECPEP	A375_MHC_IP_R1	1	368.9488220214844	3	368.548852	1102.62473	0.39552	0.00014577	-0.17486	-6.4443E-05	0.22067	8.1327E-05	368.54874634422634	45.924	0.75999	45.924	45.585	46.345	0					25	14	3	0	0	0	0.74923	1	16094	16094		17.049	9.4396	1	4115400			15473	6829	11231	11317	15104	15104					0.07751942837080605
FRQDGRLLV	9	Unmodified	_FRQDGRLLV_					0	0	0		ENSG00000164338|ENST00000296792|UTP15;nc|ENSG00000164338|Q8TED0-3|UTP15	ENSG00000164338|ENST00000296792|UTP15	ENSG00000164338|ENST00000296792|UTP15	MULTI-MSMS	A375_MHC_IP_R2	2	368.9490051269531	3	368.548852	1102.62473	0.11241	4.143E-05	0.0062885	2.3176E-06	0.1187	4.3748E-05	368.5487759433174	44.926	0.86578	45.695	45.34	46.205	0.7691					27	16	3	0	0	0	0.31821	1	16796	16796		29.281	17.106	1	3548100			15474	6829	11231	11317	15105	15105					0.07751942837080605
FRQRFRQFQYR	11	Unmodified	_FRQRFRQFQYR_					0	0	0		nc|ENSG00000173275|Q6P9G9-3|ZNF449;nc|ENSG00000173275|Q6P9G9-2|ZNF449;ENSG00000173275|ENST00000339249|ZNF449	nc|ENSG00000173275|Q6P9G9-3|ZNF449	nc|ENSG00000173275|Q6P9G9-3|ZNF449	MSMS	A375_MHC_IP_R1	1	544.6688232421875	3	544.627047	1630.85931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.924	1	55.924	55.424	56.424	0								0	0	0	0.16351	1	20018	20018		0.45452	0.046251	1				15475	7784	11232	11318	15106	15106					0.06911633645495385
FRQRFRRFHYQ	11	Unmodified	_FRQRFRRFHYQ_					0	0	0		ENSG00000140265|ENST00000684362|ZSCAN29;nc|ENSG00000140265|Q8IWY8-4|ZSCAN29;nc|ENSG00000140265|Q8IWY8-3|ZSCAN29	ENSG00000140265|ENST00000684362|ZSCAN29	ENSG00000140265|ENST00000684362|ZSCAN29	MSMS	A375_MHC_IP_R1	1	820.8375854492188	2	820.937099	1639.85965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.62	1	128.62	128.12	129.12	0								0	0	0	0.1636	1	49415	49415		0	0	1				15476	5133	11233	11319	15107	15107					0.06531053365347361
FRQRFRWFCY	10	Unmodified	_FRQRFRWFCY_					0	0	0		nc|ENSG00000173258|Q8TF39-2|ZNF483;ENSG00000173258|ENST00000309235|ZNF483	nc|ENSG00000173258|Q8TF39-2|ZNF483	nc|ENSG00000173258|Q8TF39-2|ZNF483	MULTI-MSMS	A375_MHC_IP_R1	1	503.9910583496094	3	503.583791	1507.72954	-0.59097	-0.0002976	-2.2375	-0.0011268	-2.8285	-0.0014244	503.9172961374375	27.978	0.3023	27.978	27.735	28.037	0					8	5	2	0	0	0	0.72321	1	8493	8493		1.9064	0.45126	1	777360			15477	7781	11234	11320	15108	15108					-0.00401258957981554
FRREQWHRLKP	11	Unmodified	_FRREQWHRLKP_					0	0	0			REV__ENST00000482462.1_1_7:540505-540673:-|nuORF	REV__ENST00000482462.1_1_7:540505-540673:-|nuORF	MSMS	A375_MHC_IP_R1	1	777.0651245117188	2	776.934025	1551.8535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115	1	115	114.5	115.5	0								0	0	0	0.1632	1	42173	42173		2.086	1.0145	1		+		15478	25282	11235	11321	15109	15109					0.0996453513380402
FRRERDFRRRR	11	Unmodified	_FRRERDFRRRR_					0	0	0		ENST00000488868.1_1_1:28559432-28559522:-|nuORF	ENST00000488868.1_1_1:28559432-28559522:-|nuORF	ENST00000488868.1_1_1:28559432-28559522:-|nuORF	MSMS	A375_MHC_IP_R1	1	825.8693237304688	2	825.469629	1648.92471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.866	1	99.866	99.366	100.37	0								0	0	0	0.1636	1	36695	36695		0	0	1				15479	12626	11236	11322	15110	15110					0.12620047891164177
FRRERDFRRRR	11	Unmodified	_FRRERDFRRRR_					0	0	0		ENST00000488868.1_1_1:28559432-28559522:-|nuORF	ENST00000488868.1_1_1:28559432-28559522:-|nuORF	ENST00000488868.1_1_1:28559432-28559522:-|nuORF	MSMS	A375_MHC_IP_R1	1	825.9193115234375	2	825.469629	1648.92471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.3	1	100.3	99.798	100.8	0								0	0	0	0.1636	1	36864	36864		0	0	1				15480	12626	11236	11322	15111	15111					0.12620047891164177
FRRERDFRRRR	11	Unmodified	_FRRERDFRRRR_					0	0	0		ENST00000488868.1_1_1:28559432-28559522:-|nuORF	ENST00000488868.1_1_1:28559432-28559522:-|nuORF	ENST00000488868.1_1_1:28559432-28559522:-|nuORF	MSMS	A375_MHC_IP_R1	1	825.5394287109375	2	825.469629	1648.92471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.35	1	101.35	100.85	101.85	0								0	0	0	0.16355	1	37249	37249		0.26902	0.26902	1				15481	12626	11236	11322	15112	15112					0.12620047891164177
FRRERDFRRRR	11	Unmodified	_FRRERDFRRRR_					0	0	0		ENST00000488868.1_1_1:28559432-28559522:-|nuORF	ENST00000488868.1_1_1:28559432-28559522:-|nuORF	ENST00000488868.1_1_1:28559432-28559522:-|nuORF	MSMS	A375_MHC_IP_R1	1	825.8688354492188	2	825.469629	1648.92471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.5	1	101.5	101	102	0								0	0	0	0.1636	1	37301	37301		0	0	1				15482	12626	11236	11322	15113	15113					0.12620047891164177
FRRERDFRRRR	11	Unmodified	_FRRERDFRRRR_					0	0	0		ENST00000488868.1_1_1:28559432-28559522:-|nuORF	ENST00000488868.1_1_1:28559432-28559522:-|nuORF	ENST00000488868.1_1_1:28559432-28559522:-|nuORF	MSMS	A375_MHC_IP_R2	2	825.3157958984375	2	825.469629	1648.92471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.424	1	96.174	95.674	96.674	0.75045								0	0	0	0.1636	1	36249	36249		0	0	1				15483	12626	11236	11322	15114	15114					0.12620047891164177
FRRERDFRRRR	11	Unmodified	_FRRERDFRRRR_					0	0	0		ENST00000488868.1_1_1:28559432-28559522:-|nuORF	ENST00000488868.1_1_1:28559432-28559522:-|nuORF	ENST00000488868.1_1_1:28559432-28559522:-|nuORF	MSMS	A375_MHC_IP_R2	2	825.2240600585938	2	825.469629	1648.92471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.285	1	98.041	97.541	98.541	0.75586								0	0	0	0.1636	1	36926	36926		0	0	1				15484	12626	11236	11322	15115	15115					0.12620047891164177
FRRERDFRRRR	11	Unmodified	_FRRERDFRRRR_					0	0	0		ENST00000488868.1_1_1:28559432-28559522:-|nuORF	ENST00000488868.1_1_1:28559432-28559522:-|nuORF	ENST00000488868.1_1_1:28559432-28559522:-|nuORF	MSMS	A375_MHC_IP_R2	2	825.86865234375	2	825.469629	1648.92471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.31	1	102.08	101.58	102.58	0.76428								0	0	0	0.16354	1	38403	38403		0.30703	0.30703	1				15485	12626	11236	11322	15116	15116					0.12620047891164177
FRRGKEQEGP	10	Unmodified	_FRRGKEQEGP_					0	0	0		ENST00000256649.8_1_1:117663878-117664328:-|nuORF	ENST00000256649.8_1_1:117663878-117664328:-|nuORF	ENST00000256649.8_1_1:117663878-117664328:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	402.6235656738281	3	401.879149	1202.61562	-0.2783	-0.00011184	-1.3196	-0.0005303	-1.5979	-0.00064215	401.87661240447994	23.702	0.30535	24.332	24.129	24.435	0.63014					10	5	3	0	0	0	0.70479	1	7671	7671		10.151	1.4052	1	1044800			15486	10242	11237	11323	15117	15117					0.022415494807546565
FRRHVRNDIGR	11	Unmodified	_FRRHVRNDIGR_					0	0	0			REV__ENST00000510078.5_1_3:129115194-129117890:-|nuORF	REV__ENST00000510078.5_1_3:129115194-129117890:-|nuORF	MSMS	A375_MHC_IP_R1	1	713.6978759765625	2	713.40035	1424.78615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.14	1	110.14	109.64	110.64	0								0	0	0	0.16258	1	40388	40388		5.2969	2.3016	1		+		15487	25557	11238	11324	15118	15118					0.09074504922887172
FRRKEKMFRFF	11	Unmodified	_FRRKEKMFRFF_					0	0	0		ENSG00000148408|ENST00000371372|CACNA1B;nc|ENSG00000148408|Q00975-2|CACNA1B	ENSG00000148408|ENST00000371372|CACNA1B	ENSG00000148408|ENST00000371372|CACNA1B	MULTI-MSMS	A375_MHC_IP_R2	2	531.358642578125	3	531.294129	1590.86056	-0.81524	-0.00043313	0.014325	7.6109E-06	-0.80091	-0.00042552	531.2940818993152	54.847	1.3718	55.598	54.865	56.237	0.75075					79	26	5	0	0	0	0.73809	1	20648	20648		1.2148	0	1	210590000			15488	5740	11239	11325	15119	15119					0.08876131690021793
FRRKRRRVLP	10	Unmodified	_FRRKRRRVLP_					0	0	0			REV__ENSG00000186479|ENST00000334025|RGS7BP	REV__ENSG00000186479|ENST00000334025|RGS7BP	MSMS	A375_MHC_IP_R1	1	692.6729125976562	2	692.449646	1382.88474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.291	1	97.291	96.791	97.791	0								0	0	0	0.15591	1	35746	35746		1.6526	0.17072	1		+		15489	21973	11240	11326	15120	15120					0.20861152958582352
FRRPRGLFI	9	Unmodified	_FRRPRGLFI_					0	0	0		nc|ENSG00000151376|Q16798-2|ME3;ENSG00000151376|ENST00000524826|ME3	nc|ENSG00000151376|Q16798-2|ME3	nc|ENSG00000151376|Q16798-2|ME3	MULTI-MSMS	A375_MHC_IP_R1	1	388.3052062988281	3	387.90497	1160.69308	-0.12562	-4.873E-05	0.56332	0.00021851	0.43769	0.00016978	387.90519934694703	67.444	0.35726	67.444	67.297	67.654	0					10	6	2	0	0	0	0.73415	1	24507	24507		2.2828	0	1	1278100			15490	5901	11241	11327	15121	15121					0.11916232207613575
FRRPRGLFI	9	Unmodified	_FRRPRGLFI_					0	0	0		nc|ENSG00000151376|Q16798-2|ME3;ENSG00000151376|ENST00000524826|ME3	nc|ENSG00000151376|Q16798-2|ME3	nc|ENSG00000151376|Q16798-2|ME3	MULTI-SECPEP	A375_MHC_IP_R2	2	388.6329040527344	3	387.90497	1160.69308	-0.29591	-0.00011478	0.43141	0.00016735	0.1355	5.2561E-05	387.905141115977	66.285	0.51013	67.021	66.78	67.29	0.73631					13	9	2	0	0	0	0.78798	1	25175	25175		2.2828	0.19677	1	1067400			15491	5901	11241	11327	15122	15122					0.11916232207613575
FRRPRGLFI	9	Unmodified	_FRRPRGLFI_					0	0	0		nc|ENSG00000151376|Q16798-2|ME3;ENSG00000151376|ENST00000524826|ME3	nc|ENSG00000151376|Q16798-2|ME3	nc|ENSG00000151376|Q16798-2|ME3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	387.90497	1160.69308	-0.12562	-4.873E-05	0.56332	0.00021851	0.43769	0.00016978	387.90519934694703	67.444	0.35726	67.444	67.297	67.654	0	0	0	NaN	2.2828	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1278100			15492	5901	11241	11327							0.11916232207613575
FRRQEMFDRQF	11	Unmodified	_FRRQEMFDRQF_					0	0	0			REV__ENSG00000023171|ENST00000635736|GRAMD1B	REV__ENSG00000023171|ENST00000635736|GRAMD1B	MSMS	A375_MHC_IP_R1	1	520.6655883789062	3	520.589382	1558.74632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.601	1	68.601	68.101	69.101	0								0	0	0	0.16337	1	24879	24879		0.40827	0.078994	1		+		15493	16274	11242	11328	15123	15123					-0.010708028627050226
FRRQYDEF	8	Unmodified	_FRRQYDEF_					0	0	0		ENSG00000102452|ENST00000251127|NALCN;nc|ENSG00000102452|Q8IZF0-2|NALCN;ENST00000470333.1_1_13:101833448-102051507:-|nuORF;NALCN|p.I927Tfs*7|1|0.09|ENSG00000102452|chr13:101104406-101104407|-/TATGGATAGTT|frameshift_variant;ENST00000497170.5_1_13:101795259-101997694:-|nuORF	ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MSMS	A375_MHC_IP_R1	1	387.4452819824219	3	387.520962	1159.54106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.475	1	40.475	39.975	40.975	0								0	0	0	0.16876	1	13911	13911		3.9444	0.66309	1				15494	2380	11243	11329	15124	15124					-0.03233213330622675
FRRQYYKKWYD	11	Unmodified	_FRRQYYKKWYD_					0	0	0		ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	MSMS	A375_MHC_IP_R1	1	551.514404296875	3	551.615925	1651.82595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.622	1	21.622	21.122	22.122	0								0	0	0	0.16352	1	5711	5711		0.40827	0.31342	1				15495	8700	11244	11330	15125	15125					0.026105870829269406
FRRRRWRRKMA	11	Unmodified	_FRRRRWRRKMA_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF;MYOF|p.A1785Pfs*8|1|0.41|ENSG00000138119|chr10:93323281-93323281|C/-|frameshift_variant	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-SECPEP	A375_MHC_IP_R2	2	540.384521484375	3	540.319783	1617.93752	-0.65633	-0.00035463	-0.73749	-0.00039848	-1.3938	-0.00075311	540.3192766671889	139.51	1.306	139.57	138.65	139.95	0.059906					29	25	2	0	0	0	1.0015	1	54559	54559		0	0	1	901970			15496	4961	11245	11331	15126	15126					0.15326787749722826
FRRSQRRNIPR	11	Unmodified	_FRRSQRRNIPR_					0	0	0			REV__ENST00000436397.5_2_19:52901831-52904968:+|nuORF	REV__ENST00000436397.5_2_19:52901831-52904968:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	496.3590087890625	3	495.958908	1484.85489	-0.63956	-0.00031719	0.30312	0.00015033	-0.33644	-0.00016686	495.95900051042605	133.18	1.326	133.18	132.28	133.61	0					123	25	6	0	0	0	1.0015	1	51337	51337		0.094841	0	1	237680000	+		15497	24763	11246	11332	15127	15127					0.13186169222603894
FRRVTEKKP	9	Unmodified	_FRRVTEKKP_					0	0	0		nc|ENSG00000227345|Q86W56-5|PARG;nc|ENSG00000227345|Q86W56-4|PARG;nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-2|PARG;ENSG00000227345|ENST00000616448|PARG	nc|ENSG00000227345|Q86W56-5|PARG	nc|ENSG00000227345|Q86W56-5|PARG	MSMS	A375_MHC_IP_R2	2	387.6011047363281	3	387.568135	1159.68258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.583	1	34.335	33.835	34.835	0.75225								0	0	0	0.15486	1	12040	12040		7.1017	0.90987	1				15498	9709	11247	11333	15128	15128					0.10912204762507827
FRSAEPNAL	9	Unmodified	_FRSAEPNAL_					0	0	0		nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-4|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-3|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-2|NCKIPSD;ENSG00000213672|ENST00000294129|NCKIPSD	nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD	nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD	MULTI-SECPEP	A375_MHC_IP_R2	2	502.4537353515625	2	502.761623	1003.50869	-0.836	-0.00042031	-0.12319	-6.1934E-05	-0.95918	-0.00048224	502.76160940251765	34.666	0.76064	35.429	35.068	35.829	0.76338					28	14	3	0	0	0	0.30925	1	12510	12510		49.554	9.6046	1	4824100			15499	9576	11248	11334	15129	15129					0.007079992663648227
FRSEDIKRL	9	Unmodified	_FRSEDIKRL_					0	0	0		nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3|COG4	nc|ENSG00000103051|Q9H9E3|COG4	MULTI-MSMS	A375_MHC_IP_R1	1	388.2619934082031	3	388.555895	1162.64586	-0.01631	-6.3374E-06	0.046647	1.8125E-05	0.030337	1.1788E-05	388.5559366395127	27.955	1.0101	27.955	27.735	28.745	0					50	19	6	0	0	0	0.017116	2	8578	8578;8591		87.123	49.352	1	62830000			15500	2415	11249	11335	15130;15131	15130					0.071039081459503
FRSEDIKRL	9	Unmodified	_FRSEDIKRL_					0	0	0		nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3|COG4	nc|ENSG00000103051|Q9H9E3|COG4	MULTI-MSMS	A375_MHC_IP_R2	2	388.9028625488281	3	388.555895	1162.64586	-0.12344	-4.7963E-05	0.20384	7.9204E-05	0.080403	3.1241E-05	388.5559718418668	27.241	0.81232	27.92	27.69	28.502	0.67857					39	15	4	0	0	0	0.017116	1	9324	9324		87.123	46.398	1	70965000			15501	2415	11249	11335	15132	15132					0.071039081459503
FRSERREMFQN	11	Unmodified	_FRSERREMFQN_					0	0	0			REV__ENST00000595545.5_1_19:40329790-40331059:-|nuORF	REV__ENST00000595545.5_1_19:40329790-40331059:-|nuORF	MSMS	A375_MHC_IP_R2	2	500.4747009277344	3	500.577253	1498.70993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.57028	1	1.0407	0.54072	1.5407	0.47044								0	0	0	0.16355	1	189	189		0.073264	0	1		+		15502	26467	11250	11336	15133	15133					-0.019476797594052186
FRSLLINAV	9	Unmodified	_FRSLLINAV_					0	0	0		nc|ENSG00000183010|P32322-2|PYCR1;ENSG00000183010|ENST00000329875|PYCR1;ENSG00000143811|ENST00000343818|PYCR2;nc|ENSG00000183010|P32322-3|PYCR1	nc|ENSG00000183010|P32322-2|PYCR1	nc|ENSG00000183010|P32322-2|PYCR1	MULTI-SECPEP	A375_MHC_IP_R1	1	517.2134399414062	2	516.813659	1031.61277	-0.40435	-0.00020897	-0.05238	-2.707E-05	-0.45673	-0.00023604	516.8135692816895	88.789	0.55836	88.789	88.612	89.171	0					18	10	2	0	0	0	0.4465	1	32618	32618		38.176	11.292	1	4219100			15503	5436	11251	11337	15134	15134					0.09822326093899392
FRSLLINAV	9	Unmodified	_FRSLLINAV_					0	0	0		nc|ENSG00000183010|P32322-2|PYCR1;ENSG00000183010|ENST00000329875|PYCR1;ENSG00000143811|ENST00000343818|PYCR2;nc|ENSG00000183010|P32322-3|PYCR1	nc|ENSG00000183010|P32322-2|PYCR1	nc|ENSG00000183010|P32322-2|PYCR1	MULTI-SECPEP	A375_MHC_IP_R2	2	517.2129516601562	2	516.813659	1031.61277	-0.68199	-0.00035246	0.17179	8.8784E-05	-0.5102	-0.00026368	516.8136802941708	87.813	0.55873	88.545	88.266	88.825	0.7318					17	10	2	0	0	0	0.54812	1	33394	33394		31.268	8.5321	1	5070400			15504	5436	11251	11337	15135	15135					0.09822326093899392
FRTEKIRKL	9	Unmodified	_FRTEKIRKL_					0	0	0		nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8;nc|ENSG00000204634|O95759-2|TBC1D8	nc|ENSG00000204634|O95759|TBC1D8	nc|ENSG00000204634|O95759|TBC1D8	MULTI-MSMS	A375_MHC_IP_R1	1	397.98382568359375	3	397.583785	1189.72953	-0.027298	-1.0853E-05	-0.11028	-4.3844E-05	-0.13757	-5.4697E-05	397.58369759012834	20.42	0.86648	20.42	20.079	20.946	0					34	16	3	0	0	0	0.50892	1	5209	5209		14.218	1.9906	1	3017100			15505	9472	11252	11338	15136	15136					0.14225064313654912
FRTKKKKR	8	Unmodified	_FRTKKKKR_					0	0	0		ENST00000594893.5_1_19:15511079-15529746:-|nuORF;ENST00000593845.5_1_19:15510111-15529746:-|nuORF;nc|ENSG00000011243|Q9ULX6-2|AKAP8L;ENSG00000011243|ENST00000397410|AKAP8L;ENST00000598292.1_1_19:15511553-15512083:-|nuORF	ENST00000594893.5_1_19:15511079-15529746:-|nuORF	ENST00000594893.5_1_19:15511079-15529746:-|nuORF	MSMS	A375_MHC_IP_R2	2	546.7173461914062	2	546.361642	1090.70873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.12	1	142.16	141.66	142.66	0.030731								0	0	0	0.16876	1	55567	55567		2.3027	1.7012	1				15506	994	11253	11339	15137	15137					0.16700518724655922
FRVDYILSV	9	Unmodified	_FRVDYILSV_					0	0	0		nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000494081.5_1_20:57478601-57480533:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF	nc|ENSG00000087460|P63092-3|GNAS	nc|ENSG00000087460|P63092-3|GNAS	MULTI-SECPEP	A375_MHC_IP_R1	1	556.7109985351562	2	556.310949	1110.60735	-0.41382	-0.00023021	0.23108	0.00012855	-0.18274	-0.00010166	556.3110291206132	111.18	0.97169	111.18	110.8	111.77	0					48	18	4	0	0	0	0.65498	1	40708	40708		33.445	33.445	1	17009000			15507	1873	11254	11340	15138	15138					0.05646602511410492
FRVIYGTWYFR	11	Unmodified	_FRVIYGTWYFR_					0	0	0			REV__ENST00000274276.7_1_5:38881831-38883971:+|nuORF	REV__ENST00000274276.7_1_5:38881831-38883971:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	503.6861267089844	3	503.266345	1506.7772	-0.63374	-0.00031894	-1.0425	-0.00052467	-1.6763	-0.00084361	503.265854022075	133.53	0.45926	133.53	133.25	133.71	0					10	8	2	0	0	0	0.99883	1	51462	51462		2.6312	0	1	1202500	+		15508	23288	11255	11341	15139	15139					0.04408718513832355
FRVVKLKRI	9	Unmodified	_FRVVKLKRI_					0	0	0		LMOD3|p.S484F|1|0.46|ENSG00000163380|chr3:69118904-69118904|G/A|missense_variant;ENSG00000163380|ENST00000420581|LMOD3	LMOD3|p.S484F|1|0.46|ENSG00000163380|chr3:69118904-69118904|G/A|missense_variant	LMOD3|p.S484F|1|0.46|ENSG00000163380|chr3:69118904-69118904|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	387.59619140625	3	386.932637	1157.77608	0.14543	5.627E-05	-1.1399	-0.00044106	-0.99446	-0.00038479	386.9321490180594	28.77	0.35299	28.77	28.643	28.996	0					11	6	2	0	0	0	0.81688	1	8991	8991		1.0715	0.20709	1	1434900			15509	6656	11256	11342	15140	15140					0.2035054893560755
FRVVLNYNE	9	Unmodified	_FRVVLNYNE_					0	0	0		NPR1|p.G428E|1|0.58|ENSG00000169418|chr1:153683395-153683395|G/A|missense_variant	NPR1|p.G428E|1|0.58|ENSG00000169418|chr1:153683395-153683395|G/A|missense_variant	NPR1|p.G428E|1|0.58|ENSG00000169418|chr1:153683395-153683395|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	385.6069030761719	3	385.204862	1152.59276	0.14529	5.5967E-05	2.5619	0.00098687	2.7072	0.0010428	385.2068503493944	53.205	0.70933	53.205	52.744	53.453	0					19	13	2	0	0	0	0.72985	1	18969	18969		2.4985	0	1	3007500			15510	15024	11257	11343	15141	15141					0.02256530363274578
FRWFMKYQHVD	11	Unmodified	_FRWFMKYQHVD_					0	0	0		ENST00000414118.2_1_7:102743878-102755668:-|nuORF	ENST00000414118.2_1_7:102743878-102755668:-|nuORF	ENST00000414118.2_1_7:102743878-102755668:-|nuORF	MSMS	A375_MHC_IP_R1	1	778.8804321289062	2	778.876996	1555.73944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.4	1	100.4	99.897	100.9	0								0	0	0	0.16351	1	36900	36900		0.30703	0	1				15511	11663	11258	11344	15142	15142					-0.016201157432760738
FRWHEHFRYYQ	11	Unmodified	_FRWHEHFRYYQ_					0	0	0			REV__nc|ENSG00000211460|Q15631-2|TSN	REV__nc|ENSG00000211460|Q15631-2|TSN	MSMS	A375_MHC_IP_R1	1	835.3619384765625	2	834.894566	1667.77458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.02	1	138.02	137.52	138.52	0								0	0	0	0.1636	1	53107	53107		0	0	1		+		15512	22603	11259	11345	15143	15143					-0.032597368911183366
FRWLLIWFKR	10	Unmodified	_FRWLLIWFKR_					0	0	0		nc|ENSG00000104946|Q9HA65-3|TBC1D17;ENSG00000104946|ENST00000221543|TBC1D17;nc|ENSG00000104946|Q9HA65-2|TBC1D17;ENST00000596243.5_1_19:50382536-50391878:+|nuORF;ENST00000600354.1_1_19:50390695-50391878:+|nuORF	nc|ENSG00000104946|Q9HA65-3|TBC1D17	nc|ENSG00000104946|Q9HA65-3|TBC1D17	MULTI-SECPEP	A375_MHC_IP_R2	2	489.35845947265625	3	488.959075	1463.8554	-0.37392	-0.00018283	-0.41073	-0.00020083	-0.78465	-0.00038366	488.95875743049567	149.15	1.4305	149.16	148.32	149.75	0.018707					78	38	3	0	0	0	0.95062	1	57896	57896		0.15932	0.064481	1	204390			15513	2556	11260	11346	15144	15144					0.14202195889697578
FRWRRHHHRLK	11	Unmodified	_FRWRRHHHRLK_					0	0	0			REV__nc|ENSG00000177663|Q96F46-2|IL17RA	REV__nc|ENSG00000177663|Q96F46-2|IL17RA	MSMS	A375_MHC_IP_R2	2	543.68212890625	3	543.646776	1627.9185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.128	1	93.867	93.367	94.367	0.73902								0	0	0	0.16351	1	35408	35408		0.45452	0.35968	1		+		15514	21465	11261	11347	15145	15145					0.1296557445034523
FRWRSKRTM	9	Unmodified	_FRWRSKRTM_					0	0	0			REV__ENST00000435125.1_1_2:203385435-203385555:+|nuORF	REV__ENST00000435125.1_1_2:203385435-203385555:+|nuORF	MSMS	A375_MHC_IP_R2	2	423.2559814453125	3	423.23287	1266.67678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.512	1	33.249	32.749	33.749	0.73692								0	0	0	0.15486	1	11579	11579		7.1017	2.0542	1		+		15515	24745	11262	11348	15146	15146					0.05410782979174655
FRWWYLKITFY	11	Unmodified	_FRWWYLKITFY_					0	0	0			REV__ENSG00000145428|ENST00000347063|RNF175	REV__ENSG00000145428|ENST00000347063|RNF175	MULTI-MSMS	A375_MHC_IP_R1	1	542.02197265625	3	541.622128	1621.84456	-0.56873	-0.00030804	0.022228	1.2039E-05	-0.5465	-0.000296	541.6217882287922	55.661	0.61005	55.661	55.381	55.991	0					18	11	2	0	0	0	0.7362	2	19906	19906;19971		1.2148	0.80657	1	5437900	+		15516	19473	11263	11349	15147;15148	15147					0.05850748724787991
FRWWYLKITFY	11	Unmodified	_FRWWYLKITFY_					0	0	0			REV__ENSG00000145428|ENST00000347063|RNF175	REV__ENSG00000145428|ENST00000347063|RNF175	MULTI-SECPEP	A375_MHC_IP_R2	2	541.664794921875	3	541.622128	1621.84456	-0.99268	-0.00053765	0.43163	0.00023378	-0.56105	-0.00030388	541.6220363366498	54.864	0.61337	55.615	55.37	55.984	0.75075					23	11	3	0	0	0	1.0014	1	20812	20812		0.50596	0.50596	1	5982100	+		15517	19473	11263	11349	15149	15149					0.05850748724787991
FRWWYLKITFY	11	Unmodified	_FRWWYLKITFY_					0	0	0			REV__ENSG00000145428|ENST00000347063|RNF175	REV__ENSG00000145428|ENST00000347063|RNF175	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	541.622128	1621.84456	-0.56873	-0.00030804	0.022228	1.2039E-05	-0.5465	-0.000296	541.6217882287922	55.661	0.61005	55.661	55.381	55.991	0	0.022792	-0.00040309	NaN	1.2148	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5437900	+		15518	19473	11263	11349							0.05850748724787991
FRYEGEWKA	9	Unmodified	_FRYEGEWKA_					0	0	0		nc|ENSG00000116151|Q5T089-2|MORN1;ENSG00000116151|ENST00000378531|MORN1	nc|ENSG00000116151|Q5T089-2|MORN1	nc|ENSG00000116151|Q5T089-2|MORN1	MULTI-SECPEP	A375_MHC_IP_R1	1	396.2610168457031	3	395.861096	1184.56146	-0.20493	-8.1123E-05	0.090402	3.5787E-05	-0.11453	-4.5337E-05	395.8611275384199	41.03	0.50429	41.03	40.813	41.317	0					24	9	4	0	0	0	0.10412	1	14135	14135		78.61	61.562	1	6777500			15519	3377	11264	11350	15150	15150					-0.023440426708020823
FRYEGEWKA	9	Unmodified	_FRYEGEWKA_					0	0	0		nc|ENSG00000116151|Q5T089-2|MORN1;ENSG00000116151|ENST00000378531|MORN1	nc|ENSG00000116151|Q5T089-2|MORN1	nc|ENSG00000116151|Q5T089-2|MORN1	MULTI-SECPEP	A375_MHC_IP_R2	2	396.2607421875	3	395.861096	1184.56146	-0.18931	-7.4939E-05	-0.1457	-5.7678E-05	-0.33501	-0.00013262	395.86109519625177	40.282	0.5064	41.056	40.828	41.335	0.77451					16	9	2	0	0	0	0.11751	1	14918	14918		74.772	57.723	1	12293000			15520	3377	11264	11350	15151	15151					-0.023440426708020823
FRYKGVPF	8	Unmodified	_FRYKGVPF_					0	0	0		SULT2B1|p.P40L|1|0.29|ENSG00000088002|chr19:48575988-48575988|C/T|missense_variant;nc|ENSG00000088002|O00204-2|SULT2B1;ENSG00000088002|ENST00000201586|SULT2B1	SULT2B1|p.P40L|1|0.29|ENSG00000088002|chr19:48575988-48575988|C/T|missense_variant	SULT2B1|p.P40L|1|0.29|ENSG00000088002|chr19:48575988-48575988|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	507.19061279296875	2	507.281995	1012.54944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.03	1	133.19	132.69	133.69	0.16487								0	0	0	0.16876	1	52334	52334		5.2307	0.47466	1				15521	1882	11265	11351	15152	15152					0.043663853766588545
FRYWEEAEH	9	Unmodified	_FRYWEEAEH_					0	0	0			REV__GFAP|p.S259F|1|0.31|ENSG00000131095|chr17:44913273-44913273|G/A|missense_variant	REV__GFAP|p.S259F|1|0.31|ENSG00000131095|chr17:44913273-44913273|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	634.1800537109375	2	633.780544	1265.54654	-0.69923	-0.00044316	0.55648	0.00035269	-0.14275	-9.0473E-05	633.7806311208121	33.317	0.45767	33.317	33.09	33.547	0					16	8	2	0	0	0	0.6898	1	10836	10836		7.9102	0.62092	1	8537600	+		15522	26678	11266	11352	15153	15153					-0.07561534538808701
FSAATTSNVV	10	Unmodified	_FSAATTSNVV_					0	0	0			REV__ENST00000488498.2_1_1:156377632-156377902:-|nuORF	REV__ENST00000488498.2_1_1:156377632-156377902:-|nuORF	MSMS	A375_MHC_IP_R2	2	498.6687316894531	2	498.753464	995.492375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.397	1	66.135	65.635	66.635	0.73811								0	0	0	0.14983	1	24794	24794		18.146	1.2041	1		+		15523	25351	11267	11353	15154	15154					-0.0055512669038080276
FSADAVVELK	10	Unmodified	_FSADAVVELK_					0	0	0			REV__KIRREL2|p.R275K|1|0.36|ENSG00000126259|chr19:35860563-35860563|G/A|missense_variant	REV__KIRREL2|p.R275K|1|0.36|ENSG00000126259|chr19:35860563-35860563|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	540.1927490234375	2	539.792589	1077.57063	-0.77727	-0.00041956	1.8687	0.0010087	1.0914	0.00058914	539.79331155767	87.965	0.5586	88.697	88.316	88.875	0.7318					15	10	2	0	0	0	0.74754	1	33457	33457		17.113	2.2746	1	2326900	+		15524	26853	11268	11354	15155	15155					0.03494305894832905
FSADEAGLSDT	11	Unmodified	_FSADEAGLSDT_					0	0	0		FMN2|p.L123F|1|0.47|ENSG00000155816|chr1:240092476-240092476|C/T|missense_variant	FMN2|p.L123F|1|0.47|ENSG00000155816|chr1:240092476-240092476|C/T|missense_variant	FMN2|p.L123F|1|0.47|ENSG00000155816|chr1:240092476-240092476|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	556.9736938476562	2	556.740751	1111.46695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.995	1	58.744	58.244	59.244	0.74894								0	0	0	0.15377	1	21936	21936		18.146	0	1				15525	14007	11269	11355	15156	15156					-0.08432646003461741
FSAENEALS	9	Unmodified	_FSAENEALS_					0	0	0		LRRFIP2|p.D21N|1|0.43|ENSG00000093167|chr3:37148923-37148923|C/T|missense_variant	LRRFIP2|p.D21N|1|0.43|ENSG00000093167|chr3:37148923-37148923|C/T|missense_variant	LRRFIP2|p.D21N|1|0.43|ENSG00000093167|chr3:37148923-37148923|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	484.1838684082031	2	484.221997	966.429441	-0.89529	-0.00043352	-0.18172	-8.7995E-05	-1.077	-0.00052152	484.221875360213	60.948	0.7063	61.693	61.364	62.07	0.74503					23	13	2	0	0	0	0.76187	1	23221	23221		3.9444	3.9444	1	8851700			15526	14319	11270	11356	15157	15157					-0.05511692478432906
FSAETRLLS	9	Unmodified	_FSAETRLLS_					0	0	0			REV__nc|ENSG00000155093|Q92932-3|PTPRN2	REV__nc|ENSG00000155093|Q92932-3|PTPRN2	MULTI-SECPEP	A375_MHC_IP_R2	2	512.6768188476562	2	512.277106	1022.53966	-0.9184	-0.00047048	0.98863	0.00050645	0.07023	3.5977E-05	512.2779202943161	41.378	0.40443	42.152	41.997	42.401	0.77451					17	7	3	0	0	0	0.57304	1	15372	15372		18.373	0	1	3979400	+		15527	27302	11271	11357	15158	15158					0.029291525806115715
FSAFEKHQY	9	Unmodified	_FSAFEKHQY_					0	0	0		ENSG00000188342|ENST00000340473|GTF2F2	ENSG00000188342|ENST00000340473|GTF2F2	ENSG00000188342|ENST00000340473|GTF2F2	MULTI-SECPEP	A375_MHC_IP_R1	1	386.6086120605469	3	386.185579	1155.53491	0.29614	0.00011436	1.066	0.00041167	1.3621	0.00052603	386.1855112107871	31.694	0.50705	31.694	31.414	31.921	0					22	9	4	0	0	0	0.13208	1	10175	10175		32.898	22.583	1	6738700			15528	8903	11272	11358	15159	15159					-0.036637315621419475
FSAFEKHQY	9	Unmodified	_FSAFEKHQY_					0	0	0		ENSG00000188342|ENST00000340473|GTF2F2	ENSG00000188342|ENST00000340473|GTF2F2	ENSG00000188342|ENST00000340473|GTF2F2	MULTI-SECPEP	A375_MHC_IP_R2	2	386.60845947265625	3	386.185579	1155.53491	-0.1621	-6.26E-05	0.9538	0.00036834	0.7917	0.00030574	386.1856051760052	30.939	0.76031	31.658	31.367	32.128	0.71857					32	14	4	0	0	0	0.10103	1	10891	10891		42.312	25.747	1	6351800			15529	8903	11272	11358	15160	15160					-0.036637315621419475
FSAFEKHQY	9	Unmodified	_FSAFEKHQY_					0	0	0		ENSG00000188342|ENST00000340473|GTF2F2	ENSG00000188342|ENST00000340473|GTF2F2	ENSG00000188342|ENST00000340473|GTF2F2	MULTI-SECPEP	A375_MHC_IP_R2	2	579.17431640625	2	578.774731	1155.53491	-0.26298	-0.00015221	-0.078561	-4.5469E-05	-0.34154	-0.00019768	578.7743642137667	30.942	0.40384	31.661	31.417	31.821	0.71857					13	7	3	0	0	0	0.4465	1	10947	10947		31.268	14.155	1	2150600			15530	8903	11272	11358	15161	15161					-0.036637315621419475
FSAFEKHQY	9	Unmodified	_FSAFEKHQY_					0	0	0		ENSG00000188342|ENST00000340473|GTF2F2	ENSG00000188342|ENST00000340473|GTF2F2	ENSG00000188342|ENST00000340473|GTF2F2	MULTI-MATCH	A375_MHC_IP_R1	1		2	578.774731	1155.53491	-0.13349	-7.7261E-05	0.38444	0.0002225	0.25094	0.00014524	578.7749113975722	31.744	0.35552	31.744	31.514	31.87	0	0.041743	0.00036784	NaN	31.268	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1787800			15531	8903	11272	11358							-0.036637315621419475
FSAFLEKEY	9	Unmodified	_FSAFLEKEY_					0	0	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R1	1	567.6788940429688	2	567.279315	1132.54408	-0.1779	-0.00010092	-0.37278	-0.00021147	-0.55068	-0.00031239	567.279029123539	71.444	2.329	71.444	71.108	73.437	0					91	45	5	0	0	0	0.0020207	1	25918	25918		155.95	103.69	1	80062000			15532	2241	11273	11359	15162	15162					-0.016893829964601537
FSAFLEKEY	9	Unmodified	_FSAFLEKEY_					0	0	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R2	2	567.678955078125	2	567.279315	1132.54408	-0.44613	-0.00025308	-0.35721	-0.00020264	-0.80333	-0.00045571	567.2790505418163	70.792	1.9734	71.526	71.149	73.122	0.73421					95	38	4	0	0	0	0.074562	1	27005	27005		55.235	31.214	1	102770000			15533	2241	11273	11359	15163	15163					-0.016893829964601537
FSAFLEKEY	9	Unmodified	_FSAFLEKEY_					0	0	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R2	2	567.2447509765625	2	567.279315	1132.54408	-0.45718	-0.00025935	-0.46983	-0.00026653	-0.92701	-0.00052587	567.7806419306161	72.778	0.96468	73.514	72.922	73.887	0.73541					25	18	2	0	0	0	0.22013	1	27737	27737		36.506	17.249	1	2049300			15534	2241	11273	11359	15164	15164					-0.016893829964601537
FSAIGCHNGKN	11	Unmodified	_FSAIGCHNGKN_					0	0	0			REV__nc|ENSG00000163131|P25774-2|CTSS	REV__nc|ENSG00000163131|P25774-2|CTSS	MULTI-MSMS	A375_MHC_IP_R2	2	574.6671752929688	2	574.26929	1146.52403	-0.28395	-0.00016306	-1.5467	-0.00088824	-1.8307	-0.0010513	574.2681956273263	70.829	0.6573	71.563	71.251	71.908	0.73421					17	12	2	0	0	0	0.49816	1	26876	26876		31.268	7.4786	1	3222400	+		15535	20341	11274	11360	15165	15165					-0.043374572080892904
FSAIQGKLRL	10	Unmodified	_FSAIQGKLRL_					0	0	0			REV__ENST00000233893.9_1_2:198364810-198364897:+|nuORF	REV__ENST00000233893.9_1_2:198364810-198364897:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	567.2454833984375	2	566.84549	1131.67643	-0.37596	-0.00021311	-0.51498	-0.00029191	-0.89094	-0.00050502	566.8452493486488	74.02	0.40506	74.02	73.792	74.197	0					13	7	2	0	0	0	0.78945	1	26978	26978		19.257	0	1	2228900	+		15536	23081	11275	11361	15166	15166					0.11585686530997918
FSAKDREGGPA	11	Unmodified	_FSAKDREGGPA_					0	0	0			REV__nc|ENSG00000130159|Q9BQ95-4|ECSIT	REV__nc|ENSG00000130159|Q9BQ95-4|ECSIT	MSMS	A375_MHC_IP_R2	2	567.6782836914062	2	567.780544	1133.54654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.981	1	72.715	72.215	73.215	0.73421								0	0	0	0.15541	1	27314	27314		17.113	0.96379	1		+		15537	18519	11276	11362	15167	15167					-0.01489534538791304
FSALEVNSSYE	11	Unmodified	_FSALEVNSSYE_					0	0	0			REV__ENST00000562801.5_1_16:46950457-46962906:+|nuORF	REV__ENST00000562801.5_1_16:46950457-46962906:+|nuORF	MSMS	A375_MHC_IP_R2	2	623.3001098632812	2	623.285325	1244.5561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.48	1	148.5	148	149	0.018707								0	0	0	0.16337	1	57663	57663		1.1933	0.50296	1		+		15538	20651	11277	11363	15168	15168					-0.056398110439204174
FSAPSYLMGY	10	Unmodified	_FSAPSYLMGY_					0	0	0		nc|ENSG00000112053|Q96RN1-2|SLC26A8;ENSG00000112053|ENST00000490799|SLC26A8;ENST00000486155.1_1_6:35928714-35992326:-|nuORF;nc|ENSG00000112053|Q96RN1-4|SLC26A8	nc|ENSG00000112053|Q96RN1-2|SLC26A8	nc|ENSG00000112053|Q96RN1-2|SLC26A8	MSMS	A375_MHC_IP_R2	2	568.2192993164062	2	568.260068	1134.50558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.021	1	71.755	71.255	72.255	0.73421								0	0	0	0.15105	1	26933	26933		15.847	0	1				15539	3045	11278	11364	15169	15169					-0.0562901190262437
FSAQHLALW	9	Unmodified	_FSAQHLALW_					0	0	0		ENST00000217173.6_1_20:3089740-3090079:-|nuORF	ENST00000217173.6_1_20:3089740-3090079:-|nuORF	ENST00000217173.6_1_20:3089740-3090079:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	536.8089599609375	2	536.782359	1071.55016	-0.75916	-0.00040751	4.4608	0.0023945	3.7016	0.001987	536.784425617076	79.837	0.91757	79.837	79.574	80.492	0					28	17	2	0	0	0	0.38603	1	29195	29195		25.399	5.9603	1	2209500			15540	10100	11279	11365	15170	15170					0.01725180025687223
FSARRSSRT	9	Unmodified	_FSARRSSRT_					0	0	0		nc|ENSG00000169432|Q15858-3|SCN9A;ENSG00000169432|ENST00000642356|SCN9A;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A	nc|ENSG00000169432|Q15858-3|SCN9A	nc|ENSG00000169432|Q15858-3|SCN9A	MULTI-SECPEP	A375_MHC_IP_R2	2	355.9252624511719	3	356.52834	1066.56319	-0.30493	-0.00010872	-0.34101	-0.00012158	-0.64594	-0.0002303	356.86233592776597	40.471	0.81276	41.246	40.879	41.692	0.77451					45	15	5	0	0	0	0.78719	1	14914	14914		8.9762	8.9762	1	12493000			15541	7407	11280	11366	15171	15171					0.03257011137793597
FSARTELIVPF	11	Unmodified	_FSARTELIVPF_					0	0	0		nc|ENSG00000134909|A7KAX9-3|ARHGAP32	nc|ENSG00000134909|A7KAX9-3|ARHGAP32	nc|ENSG00000134909|A7KAX9-3|ARHGAP32	MULTI-SECPEP	A375_MHC_IP_R2	2	640.756103515625	2	640.355888	1278.69722	-0.59188	-0.00037901	-0.2583	-0.00016541	-0.85018	-0.00054442	640.3557739177361	93.693	1.5729	94.437	93.904	95.477	0.74474					62	30	4	0	0	0	0.84606	1	35581	35581		21.537	21.537	1	17599000			15542	14613	11281	11367	15172	15172					0.06902232119955443
FSAVIQSFFQ	10	Unmodified	_FSAVIQSFFQ_					0	0	0		USP28|p.L180F|1|0.69|ENSG00000048028|chr11:113834332-113834332|G/A|missense_variant	USP28|p.L180F|1|0.69|ENSG00000048028|chr11:113834332-113834332|G/A|missense_variant	USP28|p.L180F|1|0.69|ENSG00000048028|chr11:113834332-113834332|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	391.8266906738281	3	391.86948	1172.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.974	1	48.736	48.236	49.236	0.76128								0	0	0	0.1511	1	18005	18005		15.739	0.49014	1				15543	30126	11282	11368	15173	15173					0.0072201213176867896
FSAYNYRTY	9	Unmodified	_FSAYNYRTY_					0	0	0		ENSG00000214113|ENST00000330636|LYRM4	ENSG00000214113|ENST00000330636|LYRM4	ENSG00000214113|ENST00000330636|LYRM4	MULTI-SECPEP	A375_MHC_IP_R1	1	593.171875	2	592.772188	1183.52982	-0.0088266	-5.2322E-06	0.1364	8.0856E-05	0.12758	7.5624E-05	592.772703602712	49.518	0.50919	49.518	49.336	49.845	0					18	9	3	0	0	0	0.058501	1	17518	17518		78.06	45.275	1	2807500			15544	9605	11283	11369	15174	15174					-0.05460035424766829
FSAYNYRTY	9	Unmodified	_FSAYNYRTY_					0	0	0		ENSG00000214113|ENST00000330636|LYRM4	ENSG00000214113|ENST00000330636|LYRM4	ENSG00000214113|ENST00000330636|LYRM4	MULTI-SECPEP	A375_MHC_IP_R2	2	593.1725463867188	2	592.772188	1183.52982	-0.69902	-0.00041436	0.45434	0.00026932	-0.24468	-0.00014504	592.7724273240456	48.907	0.61185	49.664	49.434	50.046	0.75737					15	11	2	0	0	0	0.062502	1	18391	18391		74.2	34.25	1	3127200			15545	9605	11283	11369	15175	15175					-0.05460035424766829
FSCFCCCF	8	Unmodified	_FSCFCCCF_					0	0	0		ENST00000560400.1_1_17:40007277-40007520:-|nuORF	ENST00000560400.1_1_17:40007277-40007520:-|nuORF	ENST00000560400.1_1_17:40007277-40007520:-|nuORF	MSMS	A375_MHC_IP_R1	1	480.1695556640625	2	480.149563	958.284573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.19	1	143.19	142.69	143.69	0								0	0	0	0.16876	1	54935	54935		0.79363	0	1				15546	13492	11284	11370	15176	15176					-0.1962381474677386
FSCFCCCFGF	10	Unmodified	_FSCFCCCFGF_					0	0	0		ENST00000560400.1_1_17:40007277-40007520:-|nuORF	ENST00000560400.1_1_17:40007277-40007520:-|nuORF	ENST00000560400.1_1_17:40007277-40007520:-|nuORF	MSMS	A375_MHC_IP_R2	2	582.2110595703125	2	582.194502	1162.37445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.173	1	92.912	92.412	93.412	0.73902								0	0	0	0.15435	1	35056	35056		6.7232	2.7788	1				15547	13492	11285	11371	15177	15177					-0.2002418513820885
FSCFCFSL	8	Unmodified	_FSCFCFSL_					0	0	0		nc|ENSG00000148541|Q8NE31-2|FAM13C;nc|ENSG00000148541|Q8NE31-3|FAM13C;ENSG00000148541|ENST00000618804|FAM13C	nc|ENSG00000148541|Q8NE31-2|FAM13C	nc|ENSG00000148541|Q8NE31-2|FAM13C	MSMS	A375_MHC_IP_R2	2	477.1403503417969	2	477.198425	952.382296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.036	1	67.772	67.272	68.272	0.73631								0	0	0	0.16876	1	25396	25396		13.508	1.8676	1				15548	5750	11286	11372	15178	15178					-0.09579966554758812
FSCRDYNWY	9	Unmodified	_FSCRDYNWY_					0	0	0		ENST00000427574.6_1_11:76157982-76207767:+|nuORF	ENST00000427574.6_1_11:76157982-76207767:+|nuORF	ENST00000427574.6_1_11:76157982-76207767:+|nuORF	MSMS	A375_MHC_IP_R2	2	627.259765625	2	627.255848	1252.49714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.45	1	131.64	131.14	132.14	0.18953								0	0	0	0.15486	1	51709	51709		4.3292	1.0479	1				15549	11824	11287	11373	15179	15179					-0.11900565819269104
FSCTMKFTV	9	Unmodified	_FSCTMKFTV_					0	0	0		ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	MSMS	A375_MHC_IP_R1	1	532.213134765625	2	532.251188	1062.48782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.07	1	109.07	108.57	109.57	0								0	0	0	0.1521	1	40008	40008		18.135	1.1927	1				15550	6319	11288	11374	15180	15180					-0.04092050429176197
FSDACEEPPT	10	Unmodified	_FSDACEEPPT_					0	0	0		ENST00000469535.5_1_1:207925470-207933074:+|nuORF;nc|ENSG00000117335|P15529-15|CD46;nc|ENSG00000117335|P15529-9|CD46;nc|ENSG00000117335|P15529-7|CD46;nc|ENSG00000117335|P15529-12|CD46;nc|ENSG00000117335|P15529-14|CD46;nc|ENSG00000117335|P15529-8|CD46;nc|ENSG00000117335|P15529-4|CD46;nc|ENSG00000117335|P15529-6|CD46;ENSG00000117335|ENST00000367042|CD46;nc|ENSG00000117335|P15529-13|CD46;nc|ENSG00000117335|P15529-3|CD46;nc|ENSG00000117335|P15529-5|CD46;nc|ENSG00000117335|P15529-10|CD46;nc|ENSG00000117335|P15529|CD46;nc|ENSG00000117335|P15529-2|CD46	ENST00000469535.5_1_1:207925470-207933074:+|nuORF	ENST00000469535.5_1_1:207925470-207933074:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	365.28533935546875	3	365.814823	1094.42264	0.22646	8.2843E-05	0.94677	0.00034634	1.1732	0.00042918	365.8150797868323	73.391	0.50787	73.391	73.132	73.64	0					15	9	2	0	0	0	0.94516	1	26763	26763		0.62683	0.62683	1	1537700			15551	3474	11289	11375	15181	15181					-0.12079373421306627
FSDACEEPPT	10	Unmodified	_FSDACEEPPT_					0	0	0		ENST00000469535.5_1_1:207925470-207933074:+|nuORF;nc|ENSG00000117335|P15529-15|CD46;nc|ENSG00000117335|P15529-9|CD46;nc|ENSG00000117335|P15529-7|CD46;nc|ENSG00000117335|P15529-12|CD46;nc|ENSG00000117335|P15529-14|CD46;nc|ENSG00000117335|P15529-8|CD46;nc|ENSG00000117335|P15529-4|CD46;nc|ENSG00000117335|P15529-6|CD46;ENSG00000117335|ENST00000367042|CD46;nc|ENSG00000117335|P15529-13|CD46;nc|ENSG00000117335|P15529-3|CD46;nc|ENSG00000117335|P15529-5|CD46;nc|ENSG00000117335|P15529-10|CD46;nc|ENSG00000117335|P15529|CD46;nc|ENSG00000117335|P15529-2|CD46	ENST00000469535.5_1_1:207925470-207933074:+|nuORF	ENST00000469535.5_1_1:207925470-207933074:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	365.814823	1094.42264	0.0086929	3.18E-06	0.94638	0.0003462	0.95507	0.00034938	365.8150086045706	72.81	0.50816	73.545	73.226	73.734	0.7354	0.077259	-1.8112E-07	NaN	0.62683	15	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1102000			15552	3474	11289	11375							-0.12079373421306627
FSDDDENGY	9	Unmodified	_FSDDDENGY_					0	0	0			REV__USP5|p.E639D|1|0.28|ENSG00000111667|chr12:6863340-6863340|A/T|missense_variant	REV__USP5|p.E639D|1|0.28|ENSG00000111667|chr12:6863340-6863340|A/T|missense_variant	MSMS	A375_MHC_IP_R1	1	531.1846313476562	2	531.188351	1060.36215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.29	1	42.29	41.79	42.79	0								0	0	0	0.15486	1	14648	14648		8.5933	2.8329	1		+		15553	28971	11290	11376	15182	15182					-0.16561767480038725
FSDEAANIY	9	Unmodified	_FSDEAANIY_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-SECPEP	A375_MHC_IP_R1	1	515.0294189453125	2	515.229822	1028.44509	-0.6165	-0.00031764	0.12677	6.5317E-05	-0.48973	-0.00025232	515.2301560891138	65.198	0.40585	65.198	64.954	65.36	0					11	7	2	0	0	0	0.53748	1	23606	23606		24.021	0	1	1094800			15554	8001	11291	11377	15183	15183					-0.0679940596137385
FSDEAANIY	9	Unmodified	_FSDEAANIY_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-SECPEP	A375_MHC_IP_R2	2	514.6995239257812	2	515.229822	1028.44509	-0.70892	-0.00036526	-0.20296	-0.00010457	-0.91189	-0.00046983	515.2297335662272	64.545	0.45885	65.285	65.054	65.513	0.74022					12	8	2	0	0	0	0.71341	1	24445	24445		13.042	1.4022	1	1224200			15555	8001	11291	11377	15184	15184					-0.0679940596137385
FSDEGGWLT	9	Unmodified	_FSDEGGWLT_					0	0	0		ENSG00000161011|ENST00000389805|SQSTM1;nc|ENSG00000161011|Q13501-2|SQSTM1	ENSG00000161011|ENST00000389805|SQSTM1	ENSG00000161011|ENST00000389805|SQSTM1	MULTI-MSMS	A375_MHC_IP_R2	2	1012.9805908203125	1	1011.4418	1010.43453	0.11047	0.00011173	-0.15226	-0.000154	-0.041792	-4.227E-05	1011.441574917105	91.711	0.7608	92.445	92.172	92.933	0.73451					29	14	3	0	0	0	0.10411	1	34878	34878		49.933	19.708	1	8423600			15556	6458	11292	11378	15185	15185					-0.07027388615813379
FSDEGGWLT	9	Unmodified	_FSDEGGWLT_					0	0	0		ENSG00000161011|ENST00000389805|SQSTM1;nc|ENSG00000161011|Q13501-2|SQSTM1	ENSG00000161011|ENST00000389805|SQSTM1	ENSG00000161011|ENST00000389805|SQSTM1	MULTI-MATCH	A375_MHC_IP_R1	1		1	1011.4418	1010.43453	0.39599	0.00040052	-0.12849	-0.00012996	0.2675	0.00027057	1011.4415495920798	92.353	0.81145	92.353	92.11	92.922	0	-0.045948	9.4171E-06	NaN	49.933	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7221900			15557	6458	11292	11378							-0.07027388615813379
FSDGRVLCY	9	Carbamidomethyl (C)	_FSDGRVLC(Carbamidomethyl (C))Y_	FSDGRVLC(1)Y		FSDGRVLC(70)Y		0	1	0		ENSG00000066279|ENST00000367409|ASPM;ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant;nc|ENSG00000066279|Q8IZT6-2|ASPM;ASPM|p.V2172Sfs*9|1|0.47|ENSG00000066279|chr1:197102741-197102741|A/-|frameshift_variant;ASPM|p.L1368*|1|0.77|ENSG00000066279|chr1:197105149-197105149|G/-|frameshift_variant	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	A375_MHC_IP_R1	1	559.1602783203125	2	558.760766	1115.50698	-0.44806	-0.00025036	-0.44542	-0.00024888	-0.89348	-0.00049924	558.7607114050247	55.78	0.66118	55.78	55.533	56.194	0					25	12	3	0	0	0	0.035419	2	19952	19952;20006		70.332	28.376	1	7719200			15558	1407	11293	11379	15186;15187	15186	7				-0.04615377813888699
FSDGRVLCY	9	Carbamidomethyl (C)	_FSDGRVLC(Carbamidomethyl (C))Y_	FSDGRVLC(1)Y		FSDGRVLC(77)Y		0	1	0		ENSG00000066279|ENST00000367409|ASPM;ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant;nc|ENSG00000066279|Q8IZT6-2|ASPM;ASPM|p.V2172Sfs*9|1|0.47|ENSG00000066279|chr1:197102741-197102741|A/-|frameshift_variant;ASPM|p.L1368*|1|0.77|ENSG00000066279|chr1:197105149-197105149|G/-|frameshift_variant	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	A375_MHC_IP_R2	2	559.1600952148438	2	558.760766	1115.50698	-0.83574	-0.00046698	0.16034	8.9592E-05	-0.6754	-0.00037739	558.7608371448241	55.044	0.91574	55.794	55.523	56.439	0.75075					31	17	3	0	0	0	0.027818	2	20779	20741;20779		76.825	22.992	1	8891200			15559	1407	11293	11379	15188;15189	15189	7				-0.04615377813888699
FSDGTVQVNF	10	Unmodified	_FSDGTVQVNF_					0	0	0		ENSG00000173846|ENST00000372201|PLK3;ENST00000465443.5_1_1:45270304-45271347:+|nuORF	ENSG00000173846|ENST00000372201|PLK3	ENSG00000173846|ENST00000372201|PLK3	MULTI-SECPEP	A375_MHC_IP_R1	1	557.6640014648438	2	557.264196	1112.51384	-0.64766	-0.00036092	0.65346	0.00036415	0.0057968	3.2304E-06	557.2643848400864	52.62	0.60989	52.62	52.336	52.946	0					27	11	3	0	0	0	0.55307	1	18725	18725		29.841	9.426	1	4705000			15560	7833	11294	11380	15190	15190					-0.03791741661666492
FSDHPGLTST	10	Unmodified	_FSDHPGLTST_					0	0	0		ENST00000475707.5_1_3:15080546-15084512:+|nuORF	ENST00000475707.5_1_3:15080546-15084512:+|nuORF	ENST00000475707.5_1_3:15080546-15084512:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	531.6481323242188	2	531.248546	1060.48254	-0.57364	-0.00030474	-0.1133	-6.0191E-05	-0.68694	-0.00036493	531.2484047510894	25.229	0.5601	25.229	25.053	25.613	0					26	10	3	0	0	0	0.36703	1	7323	7323		36.127	3.8215	1	35035000			15561	12426	11295	11381	15191	15191					-0.045283146957672216
FSDIHAGELY	10	Unmodified	_FSDIHAGELY_					0	0	0		ENSG00000010404|ENST00000340855|IDS	ENSG00000010404|ENST00000340855|IDS	ENSG00000010404|ENST00000340855|IDS	MULTI-MSMS	A375_MHC_IP_R1	1	576.6834106445312	2	576.272021	1150.52949	-0.12343	-7.1131E-05	-1.6396	-0.00094486	-1.763	-0.001016	576.270887476457	63.314	0.61504	63.314	63.069	63.684	0					16	11	2	0	0	0	0.30287	1	22860	22860		39.95	1.335	1	1101000			15562	983	11296	11382	15192	15192					-0.03975455144609441
FSDIHAGELY	10	Unmodified	_FSDIHAGELY_					0	0	0		ENSG00000010404|ENST00000340855|IDS	ENSG00000010404|ENST00000340855|IDS	ENSG00000010404|ENST00000340855|IDS	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	576.272021	1150.52949	-0.20935	-0.00012064	-1.32	-0.00076069	-1.5294	-0.00088133	576.2710406276274	62.666	0.70852	63.408	63.079	63.788	0.74263	0.047309	0.00011737	NaN	39.95	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2437700			15563	983	11296	11382							-0.03975455144609441
FSDIVKQGY	9	Unmodified	_FSDIVKQGY_					0	0	0		ENSG00000125170|ENST00000340099|DOK4;ENST00000561918.1_1_16:57512562-57513515:-|nuORF	ENSG00000125170|ENST00000340099|DOK4	ENSG00000125170|ENST00000340099|DOK4	MULTI-MSMS	A375_MHC_IP_R1	1	529.1710815429688	2	528.771657	1055.52876	-0.52602	-0.00027814	-0.23472	-0.00012411	-0.76073	-0.00040225	528.7714988546365	46.219	0.75792	46.219	45.941	46.699	0					37	14	4	0	0	0	0.0085749	1	16180	16180		171.09	92.358	1	21770000			15564	3944	11297	11383	15193	15193					0.003217502063534994
FSDIVKQGY	9	Unmodified	_FSDIVKQGY_					0	0	0		ENSG00000125170|ENST00000340099|DOK4;ENST00000561918.1_1_16:57512562-57513515:-|nuORF	ENSG00000125170|ENST00000340099|DOK4	ENSG00000125170|ENST00000340099|DOK4	MULTI-MSMS	A375_MHC_IP_R2	2	529.1712036132812	2	528.771657	1055.52876	-0.57316	-0.00030307	-0.20343	-0.00010757	-0.77659	-0.00041064	528.7715348616925	45.487	0.65606	46.252	45.997	46.654	0.76518					34	12	4	0	0	0	0.0018976	1	16975	16975		145.13	73.207	1	19867000			15565	3944	11297	11383	15194	15194					0.003217502063534994
FSDKELAAY	9	Unmodified	_FSDKELAAY_					0	0	0		nc|ENSG00000005471|P21439-3|ABCB4;ENSG00000005471|ENST00000649586|ABCB4;nc|ENSG00000005471|P21439|ABCB4	nc|ENSG00000005471|P21439-3|ABCB4	nc|ENSG00000005471|P21439-3|ABCB4	MULTI-MSMS	A375_MHC_IP_R1	1	522.6558227539062	2	522.25584	1042.49713	-0.38758	-0.00020242	0.1082	5.6509E-05	-0.27938	-0.00014591	522.255815145882	51.304	0.76188	51.304	50.966	51.728	0					23	14	3	0	0	0	0.068071	1	18217	18217		57.249	19.275	1	3761500			15566	895	11298	11384	15195	15195					-0.022422425476179342
FSDKELAAY	9	Unmodified	_FSDKELAAY_					0	0	0		nc|ENSG00000005471|P21439-3|ABCB4;ENSG00000005471|ENST00000649586|ABCB4;nc|ENSG00000005471|P21439|ABCB4	nc|ENSG00000005471|P21439-3|ABCB4	nc|ENSG00000005471|P21439-3|ABCB4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	522.25584	1042.49713	-0.70567	-0.00036854	-0.22818	-0.00011917	-0.93386	-0.00048771	522.2557712503136	50.633	0.70662	51.387	51.108	51.815	0.75406	0.041377	-0.00028446	NaN	57.249	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4732700			15567	895	11298	11384							-0.022422425476179342
FSDKKTIITK	10	Unmodified	_FSDKKTIITK_					0	0	0		ENSG00000147118|ENST00000376943|ZNF182;nc|ENSG00000147118|P17025|ZNF182	ENSG00000147118|ENST00000376943|ZNF182	ENSG00000147118|ENST00000376943|ZNF182	MULTI-MSMS	A375_MHC_IP_R1	1	394.2685546875	3	394.236051	1179.68632	0.0085179	3.3581E-06	0.013435	5.2967E-06	0.021953	8.6548E-06	394.23602615832766	43.902	0.45943	43.902	43.757	44.216	0					16	8	3	0	0	0	0.70027	1	15406	15406		12.175	4.5658	1	1746000			15568	5658	11299	11385	15196	15196					0.10366829745703399
FSDKKTIITK	10	Unmodified	_FSDKKTIITK_					0	0	0		ENSG00000147118|ENST00000376943|ZNF182;nc|ENSG00000147118|P17025|ZNF182	ENSG00000147118|ENST00000376943|ZNF182	ENSG00000147118|ENST00000376943|ZNF182	MULTI-MSMS	A375_MHC_IP_R2	2	394.268310546875	3	394.236051	1179.68632	-0.052574	-2.0727E-05	0.16995	6.6999E-05	0.11737	4.6272E-05	394.2360696362539	43.132	0.55743	43.905	43.674	44.231	0.7724					16	10	2	0	0	0	0.7086	1	16161	16161		8.4443	0.83535	1	1637300			15569	5658	11299	11385	15197	15197					0.10366829745703399
FSDKLHSKY	9	Unmodified	_FSDKLHSKY_					0	0	0		ENSG00000187257|ENST00000334955|RSBN1L;RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant;nc|ENSG00000187257|Q6PCB5-2|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	MULTI-SECPEP	A375_MHC_IP_R1	1	375.9293212890625	3	375.529346	1123.56621	0.21249	7.9795E-05	0.85157	0.00031979	1.0641	0.00039959	375.52965266658555	19.597	0.58887	19.597	19.238	19.827	0					17	11	2	0	0	0	0.23894	1	4890	4890		37.771	27.456	1	5895400			15570	8817	11300	11386	15198	15198					0.009368414719347129
FSDKLHSKY	9	Unmodified	_FSDKLHSKY_					0	0	0		ENSG00000187257|ENST00000334955|RSBN1L;RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant;nc|ENSG00000187257|Q6PCB5-2|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	MULTI-MATCH	A375_MHC_IP_R2	2		3	375.529346	1123.56621	0.021529	8.0849E-06	-0.23951	-8.9943E-05	-0.21798	-8.1858E-05	375.52938157758246	18.905	0.13086	19.508	19.452	19.583	0.60308	-0.044265	-0.00036955	NaN	37.771	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9804500			15571	8817	11300	11386							0.009368414719347129
FSDLTSRTV	9	Unmodified	_FSDLTSRTV_					0	0	0		ENSG00000164181|ENST00000508821|ELOVL7;ENST00000505959.5_1_5:60081876-60083233:-|nuORF	ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	MSMS	A375_MHC_IP_R1	1	513.2163696289062	2	513.266739	1024.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.076	1	39.076	38.576	39.576	0								0	0	0	0.15069	1	13318	13318		20.454	1.1966	1				15572	6796	11301	11387	15199	15199					0.007645622009476938
FSDLYNEVY	9	Unmodified	_FSDLYNEVY_					0	0	0		nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX;ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	MULTI-MSMS	A375_MHC_IP_R1	1	575.201171875	2	575.258579	1148.50261	0.036042	2.0733E-05	0.39395	0.00022662	0.42999	0.00024736	575.2591064432369	92.789	2.44	92.789	92.312	94.752	0					101	47	4	0	0	0	0.0095277	2	34047	34047;34259		108	68.04	1	33259000			15573	1898	11302	11388	15200;15201	15200					-0.0657056375580396
FSDMLDNFF	9	Unmodified	_FSDMLDNFF_					0	0	0			REV__ENSG00000108932|ENST00000580666|SLC16A6	REV__ENSG00000108932|ENST00000580666|SLC16A6	MSMS	A375_MHC_IP_R2	2	568.2103881835938	2	568.241875	1134.4692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.298	1	73.033	72.533	73.533	0.73508								0	0	0	0.15486	1	27435	27435		11.64	0.81637	1		+		15574	17562	11303	11389	15202	15202					-0.09265888799382083
FSDNDCYKY	9	Unmodified	_FSDNDCYKY_					0	0	0		tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1	tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1	tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	578.1239013671875	2	577.726589	1153.43863	-0.35827	-0.00020698	-2.3482	-0.0013566	-2.7065	-0.0015636	577.7250728701288	65.612	0.66112	66.35	66.172	66.833	0.73811					15	12	2	0	0	0	0.31606	1	24899	24899		47.749	23.728	1	2249800			15575	29882	11304	11390	15203	15203					-0.13195667184390913
FSDNDCYKY	9	Unmodified	_FSDNDCYKY_					0	0	0		tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1	tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1	tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	577.726589	1153.43863	-0.35915	-0.00020749	-1.6345	-0.00094429	-1.9936	-0.0011518	577.7254466903267	66.352	0.45628	66.352	65.972	66.428	0	0.0011351	0.00030027	NaN	47.749	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1642600			15576	29882	11304	11390							-0.13195667184390913
FSDNDKLYLY	10	Unmodified	_FSDNDKLYLY_					0	0	0		ENSG00000143390|ENST00000452671|RFX5;ENST00000479681.5_1_1:151317580-151318796:-|nuORF;nc|ENSG00000143390|P48382-2|RFX5	ENSG00000143390|ENST00000452671|RFX5	ENSG00000143390|ENST00000452671|RFX5	MULTI-MSMS	A375_MHC_IP_R1	1	639.0924072265625	2	639.306061	1276.59757	-0.67054	-0.00042868	0.30113	0.00019251	-0.36942	-0.00023617	639.3061974349599	75.807	0.55272	75.807	75.514	76.067	0					25	10	3	0	0	0	0.12141	1	27650	27650		59.052	5.6485	1	3374600			15577	5382	11305	11391	15204	15204					-0.02966630284618077
FSDNDKLYLY	10	Unmodified	_FSDNDKLYLY_					0	0	0		ENSG00000143390|ENST00000452671|RFX5;ENST00000479681.5_1_1:151317580-151318796:-|nuORF;nc|ENSG00000143390|P48382-2|RFX5	ENSG00000143390|ENST00000452671|RFX5	ENSG00000143390|ENST00000452671|RFX5	MULTI-SECPEP	A375_MHC_IP_R2	2	639.7060546875	2	639.306061	1276.59757	-0.80613	-0.00051537	0.12463	7.9676E-05	-0.6815	-0.00043569	639.3061638052392	75.06	0.55576	75.797	75.519	76.075	0.73752					20	10	3	0	0	0	0.028101	1	28501	28501		98.73	18.054	1	4530700			15578	5382	11305	11391	15205	15205					-0.02966630284618077
FSDNSVLRF	9	Unmodified	_FSDNSVLRF_					0	0	0			REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-SECPEP	A375_MHC_IP_R1	1	543.174560546875	2	542.774731	1083.53491	-0.32622	-0.00017706	0.052606	2.8553E-05	-0.27361	-0.00014851	542.7746332034766	70.106	0.55847	70.106	69.782	70.341	0					14	8	2	0	0	0	0.58271	1	25444	25444		14.838	0	1	3135700	+		15579	17118	11306	11392	15206	15206					-0.003517315621365924
FSDPFTGGGRY	11	Unmodified	_FSDPFTGGGRY_					0	0	0		ENSG00000137055|ENST00000397292|PLAA;ENST00000520641.1_1_9:26916617-26919410:-|nuORF	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	A375_MHC_IP_R1	1	602.6754150390625	2	602.275095	1202.53564	-0.29917	-0.00018018	0.29138	0.00017549	-0.0077846	-4.6885E-06	602.275363986662	70.574	0.82024	70.574	70.237	71.057	0					44	15	4	0	0	0	0.00093561	2	25609	25579;25609		135.86	82.031	1	12939000			15580	4853	11307	11393	15207;15208	15208					-0.05752936913063422
FSDPFTGGGRY	11	Unmodified	_FSDPFTGGGRY_					0	0	0		ENSG00000137055|ENST00000397292|PLAA;ENST00000520641.1_1_9:26916617-26919410:-|nuORF	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	A375_MHC_IP_R2	2	602.676025390625	2	602.275095	1202.53564	-0.40753	-0.00024545	0.5965	0.00035925	0.18896	0.00011381	602.2754045435323	69.935	0.86533	70.669	70.233	71.099	0.73421					44	15	4	0	0	0	0.00025862	2	26511	26511;26639		162.31	108.48	1	12749000			15581	4853	11307	11393	15209;15210	15209					-0.05752936913063422
FSDPSQQPPSY	11	Unmodified	_FSDPSQQPPSY_					0	0	0		ENSG00000071626|ENST00000233078|DAZAP1;ENST00000589874.2_1_19:1434656-1434908:+|nuORF	ENSG00000071626|ENST00000233078|DAZAP1	ENSG00000071626|ENST00000233078|DAZAP1	MULTI-MSMS	A375_MHC_IP_R1	1	627.1779174804688	2	626.777667	1251.54078	-0.58503	-0.00036668	0.13916	8.7224E-05	-0.44587	-0.00027946	626.7777133671343	50.639	0.71192	50.639	50.305	51.017	0					27	13	3	0	0	0	1.0966E-14	1	17917	17917		184.36	115.25	1	5292200			15582	1516	11308	11394	15211	15211					-0.0749267784112817
FSDPSQQPPSY	11	Unmodified	_FSDPSQQPPSY_					0	0	0		ENSG00000071626|ENST00000233078|DAZAP1;ENST00000589874.2_1_19:1434656-1434908:+|nuORF	ENSG00000071626|ENST00000233078|DAZAP1	ENSG00000071626|ENST00000233078|DAZAP1	MULTI-MSMS	A375_MHC_IP_R2	2	627.1769409179688	2	626.777667	1251.54078	-1.0165	-0.00063715	0.31991	0.00020051	-0.69664	-0.00043664	626.7778368665753	50.165	0.71232	50.919	50.548	51.26	0.75406					28	13	3	0	0	0	0.00046076	1	18836	18836		110.79	72.617	1	5216700			15583	1516	11308	11394	15212	15212					-0.0749267784112817
FSDPYVCYI	9	Unmodified	_FSDPYVCYI_					0	0	0			REV__ENSG00000187554|ENST00000642603|TLR5	REV__ENSG00000187554|ENST00000642603|TLR5	MULTI-MSMS	A375_MHC_IP_R2	2	553.6610107421875	2	553.746793	1105.47903	-0.65649	-0.00036353	3.2729	0.0018123	2.6164	0.0014488	553.7486791292047	47.845	0.45472	48.607	48.378	48.833	0.76128					12	8	2	0	0	0	0.2264	3	17963	17963;17995;18021		36.044	12.254	1	1337600	+		15584	22028	11309	11395	15213;15214;15215	15213					-0.06948700793986973
FSDPYVCYI	9	Unmodified	_FSDPYVCYI_					0	0	0			REV__ENSG00000187554|ENST00000642603|TLR5	REV__ENSG00000187554|ENST00000642603|TLR5	MULTI-SECPEP	A375_MHC_IP_R2	2	553.7154541015625	2	553.746793	1105.47903	-0.65649	-0.00036353	3.2729	0.0018123	2.6164	0.0014488	553.7486791292047	47.845	0.45472	48.607	48.378	48.833	0.76128					12	8	2	0	0	0	0.62767	1	17995	17995		16.942	6.1184	1	1337600	+		15585	22028	11309	11395	15216	15216					-0.06948700793986973
FSDSKIQKY	9	Unmodified	_FSDSKIQKY_					0	0	0		ENSG00000164190|ENST00000282516|NIPBL;nc|ENSG00000164190|Q6KC79-2|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	ENSG00000164190|ENST00000282516|NIPBL	MULTI-SECPEP	A375_MHC_IP_R1	1	558.6895751953125	2	558.290214	1114.56587	-0.81859	-0.00045701	-0.064942	-3.6256E-05	-0.88353	-0.00049327	558.2900732960984	23.612	0.30479	23.612	23.483	23.787	0					12	5	4	0	0	0	0.059502	1	6533	6533		96.936	77.574	1	16675000			15586	6800;12938	11310	11396	15217	15217					0.01317421752082737
FSDSKIQKY	9	Unmodified	_FSDSKIQKY_					0	0	0		ENSG00000164190|ENST00000282516|NIPBL;nc|ENSG00000164190|Q6KC79-2|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	ENSG00000164190|ENST00000282516|NIPBL	MULTI-MSMS	A375_MHC_IP_R2	2	558.689697265625	2	558.290214	1114.56587	-1.0591	-0.00059131	0.075993	4.2426E-05	-0.98315	-0.00054888	558.2902208178423	21.481	0.45757	22.101	21.878	22.336	0.61932					18	8	3	0	0	0	0.012229	1	6756	6756		110.79	75.181	1	5298000			15587	6800;12938	11310	11396	15218	15218					0.01317421752082737
FSDSKIQKY	9	Unmodified	_FSDSKIQKY_					0	0	0		ENSG00000164190|ENST00000282516|NIPBL;nc|ENSG00000164190|Q6KC79-2|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	ENSG00000164190|ENST00000282516|NIPBL	MULTI-MSMS	A375_MHC_IP_R2	2	372.92926025390625	3	372.529235	1114.56587	0.10038	3.7393E-05	-0.28214	-0.00010511	-0.18177	-6.7713E-05	372.5290800452656	22.683	0.91782	23.313	22.603	23.521	0.63014					41	17	3	0	0	0	0.70411	1	7153	7153		6.6304	1.5829	1	4875200			15588	6800;12938	11310	11396	15219	15219					0.01317421752082737
FSDSKIQKY	9	Unmodified	_FSDSKIQKY_					0	0	0		ENSG00000164190|ENST00000282516|NIPBL;nc|ENSG00000164190|Q6KC79-2|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	ENSG00000164190|ENST00000282516|NIPBL	MULTI-SECPEP	A375_MHC_IP_R2	2	373.2635498046875	3	372.529235	1114.56587	0.11004	4.0994E-05	-0.32416	-0.00012076	-0.21411	-7.9764E-05	372.52901620688675	21.481	0.5588	22.101	21.777	22.336	0.61932					28	10	4	0	0	0	0.14554	1	6733	6733		57.249	36.668	1	24426000			15589	6800;12938	11310	11396	15220	15220					0.01317421752082737
FSDSNDKDPF	10	Unmodified	_FSDSNDKDPF_					0	0	0		ENSG00000001561|ENST00000321037|ENPP4	ENSG00000001561|ENST00000321037|ENPP4	ENSG00000001561|ENST00000321037|ENPP4	MULTI-SECPEP	A375_MHC_IP_R2	2	585.8604125976562	2	586.248743	1170.48293	-0.45537	-0.00026696	1.0693	0.0006269	0.61397	0.00035994	586.2493624505846	92.155	0.55553	92.894	92.635	93.19	0.73901					24	10	3	0	0	0	0.87043	1	35127	35127		15.248	1.3424	1	3482100			15590	846	11311	11397	15221	15221					-0.09548939766568765
FSDSRYTFC	9	Unmodified	_FSDSRYTFC_					0	0	0			REV__ENST00000435236.2_1_X:98974480-98975440:-|nuORF	REV__ENST00000435236.2_1_X:98974480-98975440:-|nuORF	MSMS	A375_MHC_IP_R1	1	563.2132568359375	2	563.237124	1124.45969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.758	1	79.758	79.258	80.258	0								0	0	0	0.15486	1	29116	29116		12.532	0	1		+		15591	24746	11312	11398	15222	15222					-0.09755657084883751
FSDTEAAMAF	10	Unmodified	_FSDTEAAMAF_					0	0	0		WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENSG00000178252|ENST00000608424|WDR6;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENST00000420783.7_1_3:49044839-49051550:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	544.689453125	2	545.231507	1088.44846	-1.0764	-0.0005869	-0.60094	-0.00032765	-1.6774	-0.00091456	545.2311992767796	57.836	0.30221	58.584	58.427	58.729	0.74894					9	5	2	0	0	0	0.91556	1	21875	21875		3.2813	0	1	839240			15592	8149;11731	11313	11399	15223	15223					-0.09222479179038601
FSDTGNFGF	9	Unmodified	_FSDTGNFGF_					0	0	0		nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF	nc|ENSG00000142676|P62913-2|RPL11	nc|ENSG00000142676|P62913-2|RPL11	MULTI-SECPEP	A375_MHC_IP_R2	2	496.6112060546875	2	496.211432	990.408311	-0.63936	-0.00031726	0.033946	1.6845E-05	-0.60542	-0.00030042	496.211432802113	97.382	0.55913	98.138	97.822	98.381	0.75586					19	10	3	0	0	0	0.62767	1	37018	37018		16.942	2.3606	1	1232400			15593	5326	11314	11400	15224	15224					-0.08727657787278531
FSDTGNFGF	9	Unmodified	_FSDTGNFGF_					0	0	0		nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF	nc|ENSG00000142676|P62913-2|RPL11	nc|ENSG00000142676|P62913-2|RPL11	MULTI-MATCH	A375_MHC_IP_R1	1		2	496.211432	990.408311	-0.33343	-0.00016545	0.21833	0.00010834	-0.11509	-5.7111E-05	496.2114974975348	98.108	0.45549	98.108	97.896	98.352	0	-0.014981	9.9421E-05	NaN	16.942	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1244400			15594	5326	11314	11400							-0.08727657787278531
FSDVDSPYY	9	Unmodified	_FSDVDSPYY_					0	0	0		ENSG00000170779|ENST00000336219|CDCA4	ENSG00000170779|ENST00000336219|CDCA4	ENSG00000170779|ENST00000336219|CDCA4	MULTI-MSMS	A375_MHC_IP_R1	1	547.1290283203125	2	546.729655	1091.44476	-0.43636	-0.00023857	-0.13529	-7.3968E-05	-0.57165	-0.00031254	546.7293454693552	70.985	0.66599	70.985	70.698	71.364	0					28	12	3	0	0	0	0.0093345	1	25786	25786		104.8	51.224	1	5339800			15595	7537	11315	11401	15225	15225					-0.09730825681231181
FSDVDSPYY	9	Unmodified	_FSDVDSPYY_					0	0	0		ENSG00000170779|ENST00000336219|CDCA4	ENSG00000170779|ENST00000336219|CDCA4	ENSG00000170779|ENST00000336219|CDCA4	MULTI-MSMS	A375_MHC_IP_R2	2	547.12939453125	2	546.729655	1091.44476	-0.7541	-0.00041229	0.1608	8.7914E-05	-0.5933	-0.00032437	546.729627832152	70.491	0.6084	71.225	70.895	71.503	0.73421					27	11	3	0	0	0	0.012712	1	26694	26694		92.822	48.415	1	6035800			15596	7537	11315	11401	15226	15226					-0.09730825681231181
FSDVMEDLY	9	Unmodified	_FSDVMEDLY_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	A375_MHC_IP_R1	1	560.1393432617188	2	559.739165	1117.46378	-0.36111	-0.00020213	-0.28546	-0.00015978	-0.64657	-0.00036191	559.7392544375076	110.84	0.56261	110.84	110.54	111.1	0					16	10	2	0	0	0	0.17328	1	40647	40647		39.957	27.426	1	1369200			15597	7178	11316	11402	15227	15227					-0.09025612381833525
FSDVMEDLY	9	Unmodified	_FSDVMEDLY_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	A375_MHC_IP_R2	2	560.1387329101562	2	559.739165	1117.46378	-0.5191	-0.00029056	-0.56851	-0.00031822	-1.0876	-0.00060878	559.7388214163459	110.12	0.56352	110.86	110.63	111.19	0.73692					15	10	2	0	0	0	0.077132	1	41568	41568		54.774	31.625	1	1986800			15598	7178	11316	11402	15228	15228					-0.09025612381833525
FSDVNMQEY	9	Oxidation (M)	_FSDVNM(Oxidation (M))QEY_		FSDVNM(1)QEY		FSDVNM(120)QEY	0	0	1		ENSG00000067066|ENST00000340126|SP100;SP100|p.E212Tfs*12|1|0.15|ENSG00000067066|chr2:230449607-230449608|AG/-|frameshift_variant;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100	ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	A375_MHC_IP_R1	1	575.1317138671875	2	574.731871	1147.44919	-0.011786	-6.7738E-06	-0.2744	-0.00015771	-0.28619	-0.00016448	574.7317471111598	44.292	0.86798	44.292	43.859	44.727	0					40	16	3	0	0	0	0.0099679	1	15373	15373		121.53	65.357	1	11944000			15599	1426;14473	11317	11403	15229	15229		39			-0.11863684529953389
FSDVNMQEY	9	Oxidation (M)	_FSDVNM(Oxidation (M))QEY_		FSDVNM(1)QEY		FSDVNM(130)QEY	0	0	1		ENSG00000067066|ENST00000340126|SP100;SP100|p.E212Tfs*12|1|0.15|ENSG00000067066|chr2:230449607-230449608|AG/-|frameshift_variant;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100	ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	A375_MHC_IP_R2	2	575.13232421875	2	574.731871	1147.44919	-0.025137	-1.4447E-05	-0.44076	-0.00025332	-0.46589	-0.00026776	574.7316904516271	43.615	0.85859	44.385	44.026	44.885	0.77047					39	16	3	0	0	0	0.0061124	1	16210	16210		133.05	76.875	1	10371000			15600	1426;14473	11317	11403	15230	15230		39			-0.11863684529953389
FSDVNMQEY	9	Unmodified	_FSDVNMQEY_					0	0	0		ENSG00000067066|ENST00000340126|SP100;SP100|p.E212Tfs*12|1|0.15|ENSG00000067066|chr2:230449607-230449608|AG/-|frameshift_variant;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100	ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	A375_MHC_IP_R1	1	567.1343994140625	2	566.734414	1131.45428	-0.55013	-0.00031178	0.17901	0.00010145	-0.37112	-0.00021033	566.7345569516987	66.257	0.76192	66.257	65.871	66.632	0					39	14	4	0	0	0	0.007896	1	23945	23945		129.77	61.692	1	12811000			15601	1426;14473	11317	11404	15231	15231					-0.10619380667344558
FSDVNMQEY	9	Unmodified	_FSDVNMQEY_					0	0	0		ENSG00000067066|ENST00000340126|SP100;SP100|p.E212Tfs*12|1|0.15|ENSG00000067066|chr2:230449607-230449608|AG/-|frameshift_variant;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100	ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	A375_MHC_IP_R2	2	567.1340942382812	2	566.734414	1131.45428	-0.56857	-0.00032223	-0.22335	-0.00012658	-0.79192	-0.00044881	566.7343109650247	65.63	0.81437	66.368	65.968	66.782	0.73811					37	15	3	0	0	0	0.0098183	2	24839	24792;24839		114.65	58.472	1	13166000			15602	1426;14473	11317	11404	15232;15233	15233					-0.10619380667344558
FSDYLHPQY	9	Unmodified	_FSDYLHPQY_					0	0	0		nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-4|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	MULTI-MSMS	A375_MHC_IP_R1	1	585.6671142578125	2	585.266739	1168.51892	-0.21409	-0.0001253	0.12872	7.5333E-05	-0.085371	-4.9965E-05	585.2667411054229	63.448	1.3742	63.448	63.121	64.495	0					60	26	4	0	0	0	0.0015808	3	22878	22878;22939;23125		155.03	101.99	1	48448000			15603	9934	11318	11405	15234;15235;15236	15234					-0.05859437799040279
FSDYLHPQY	9	Unmodified	_FSDYLHPQY_					0	0	0		nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-4|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	MULTI-MSMS	A375_MHC_IP_R2	2	585.6663208007812	2	585.266739	1168.51892	-0.49104	-0.00028739	0.22135	0.00012955	-0.26969	-0.00015784	585.2667283328537	62.839	1.0129	63.581	63.18	64.193	0.74263					72	19	6	0	0	0	0.0053789	1	23758	23758		163.04	109.2	1	49044000			15604	9934	11318	11405	15237	15237					-0.05859437799040279
FSEAPNFAD	9	Unmodified	_FSEAPNFAD_					0	0	0		nc|ENSG00000054983|P54803-5|GALC;nc|ENSG00000054983|P54803-4|GALC;nc|ENSG00000054983|P54803-3|GALC;ENSG00000054983|ENST00000261304|GALC	nc|ENSG00000054983|P54803-5|GALC	nc|ENSG00000054983|P54803-5|GALC	MULTI-SECPEP	A375_MHC_IP_R2	2	499.4850158691406	2	499.216714	996.418876	-0.855	-0.00042683	0.0086302	4.3083E-06	-0.84637	-0.00042252	499.2164843009414	61.285	0.50349	62.031	61.769	62.272	0.74504					11	9	2	0	0	0	0.73363	1	23164	23164		10.824	0	1	1083600			15605	1265	11319	11406	15238	15238					-0.07947675132857057
FSEARIKLK	9	Unmodified	_FSEARIKLK_					0	0	0			REV__KDM5C|p.V765I|1|0.21|ENSG00000126012|chrX:53198839-53198839|C/T|missense_variant	REV__KDM5C|p.V765I|1|0.21|ENSG00000126012|chrX:53198839-53198839|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	364.6217346191406	3	364.557236	1090.64988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.856	1	73.856	73.356	74.356	0								0	0	0	0.15486	1	26899	26899		7.1017	4.3665	1		+		15606	16225	11320	11407	15239	15239					0.10817997639628629
FSECNCPSMD	10	Unmodified	_FSECNCPSMD_					0	0	0		BRINP3|p.P287S|4|0.37|ENSG00000162670|chr1:190226184-190226184|G/A|missense_variant	BRINP3|p.P287S|4|0.37|ENSG00000162670|chr1:190226184-190226184|G/A|missense_variant	BRINP3|p.P287S|4|0.37|ENSG00000162670|chr1:190226184-190226184|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	566.7161865234375	2	566.690835	1131.36712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.899	1	72.899	72.399	73.399	0								0	0	0	0.1552	1	26532	26532		3.9444	0.66309	1				15607	252	11321	11408	15240	15240					-0.19331246204910713
FSEDDGILHN	10	Unmodified	_FSEDDGILHN_					0	0	0			REV__nc|ENSG00000067208|O60447|EVI5	REV__nc|ENSG00000067208|O60447|EVI5	MSMS	A375_MHC_IP_R2	2	573.7213745117188	2	573.756735	1145.49892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.201	1	73.937	73.437	74.437	0.73541								0	0	0	0.14983	1	27786	27786		18.146	1.2041	1		+		15608	16530	11322	11409	15241	15241					-0.06801233529631645
FSEDNGFSL	9	Unmodified	_FSEDNGFSL_					0	0	0		nc|ENSG00000119684|Q9UHC1-2|MLH3;ENSG00000119684|ENST00000355774|MLH3	nc|ENSG00000119684|Q9UHC1-2|MLH3	nc|ENSG00000119684|Q9UHC1-2|MLH3	MULTI-MSMS	A375_MHC_IP_R2	2	508.72271728515625	2	508.221997	1014.42944	-0.65252	-0.00033162	-0.11943	-6.0698E-05	-0.77195	-0.00039232	508.2218476177028	91.817	0.45738	92.551	92.222	92.68	0.7345					12	8	2	0	0	0	0.65721	1	34913	34913		10.824	0.64053	1	1128200			15609	3610	11323	11410	15242	15242					-0.0771969247840616
FSEDSQDSDD	10	Unmodified	_FSEDSQDSDD_					0	0	0		nc|ENSG00000110958|Q15185-4|PTGES3	nc|ENSG00000110958|Q15185-4|PTGES3	nc|ENSG00000110958|Q15185-4|PTGES3	MSMS	A375_MHC_IP_R1	1	572.6820678710938	2	572.69928	1143.38401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.872	1	73.872	73.372	74.372	0								0	0	0	0.15308	1	26906	26906		10.824	2.9138	1				15610	14542	11324	11411	15243	15243					-0.1819500752210388
FSEDSQDSDD	10	Unmodified	_FSEDSQDSDD_					0	0	0		nc|ENSG00000110958|Q15185-4|PTGES3	nc|ENSG00000110958|Q15185-4|PTGES3	nc|ENSG00000110958|Q15185-4|PTGES3	MSMS	A375_MHC_IP_R2	2	572.6820068359375	2	572.69928	1143.38401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.194	1	73.93	73.43	74.43	0.73541								0	0	0	0.15308	1	27783	27783		10.824	5.0635	1				15611	14542	11324	11411	15244	15244					-0.1819500752210388
FSEDSQDSDD	10	Unmodified	_FSEDSQDSDD_					0	0	0		nc|ENSG00000110958|Q15185-4|PTGES3	nc|ENSG00000110958|Q15185-4|PTGES3	nc|ENSG00000110958|Q15185-4|PTGES3	MSMS	A375_MHC_IP_R2	2	572.6820678710938	2	572.69928	1143.38401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.362	1	75.1	74.6	75.6	0.73752								0	0	0	0.15435	1	28227	28227		6.7232	1.4925	1				15612	14542	11324	11411	15245	15245					-0.1819500752210388
FSEEEDDL	8	Unmodified	_FSEEEDDL_					0	0	0			REV__tr|U7T2H7|U7T2H7_FUSNUDNAintegrityscanningproteinDisAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=disAPE=3SV=1	REV__tr|U7T2H7|U7T2H7_FUSNUDNAintegrityscanningproteinDisAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=disAPE=3SV=1	MSMS	A375_MHC_IP_R1	1	492.1090087890625	2	492.195645	982.376736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.652	1	81.652	81.152	82.152	0								0	0	0	0.16876	1	29841	29841		9.3474	2.0582	1		+		15613	28743	11325	11412	15246	15246					-0.11515695331900133
FSEEEIDKF	9	Unmodified	_FSEEEIDKF_					0	0	0		tr|U7T1H7|U7T1H7_FUSNUHTHmarR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00648PE=4SV=1	tr|U7T1H7|U7T1H7_FUSNUHTHmarR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00648PE=4SV=1	tr|U7T1H7|U7T1H7_FUSNUHTHmarR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00648PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	572.0098266601562	2	572.263862	1142.51317	-0.29157	-0.00016685	1.694	0.00096942	1.4024	0.00080256	572.2637281700041	75.999	0.85633	75.999	75.413	76.269	0					24	16	2	0	0	0	0.71541	1	27519	27519		3.9444	0	1	1466600			15614	29906	11326	11413	15247	15247					-0.05238581101366435
FSEEHYIFY	9	Unmodified	_FSEEHYIFY_					0	0	0		nc|ENSG00000145715|P20936-2|RASA1;nc|ENSG00000145715|P20936-4|RASA1;ENSG00000145715|ENST00000274376|RASA1	nc|ENSG00000145715|P20936-2|RASA1	nc|ENSG00000145715|P20936-2|RASA1	MULTI-MSMS	A375_MHC_IP_R1	1	617.7162475585938	2	617.774396	1233.53424	-0.48599	-0.00030023	-0.090222	-5.5737E-05	-0.57621	-0.00035597	617.7743169520631	83.889	1.372	83.889	83.583	84.955	0					75	26	5	0	0	0	0.005759	5	30750	30650;30707;30750;30908;30975		133.7	103.48	1	25131000			15615	5572	11327	11414	15248;15249;15250;15251;15252	15250					-0.07318571001860619
FSEEHYIFY	9	Unmodified	_FSEEHYIFY_					0	0	0		nc|ENSG00000145715|P20936-2|RASA1;nc|ENSG00000145715|P20936-4|RASA1;ENSG00000145715|ENST00000274376|RASA1	nc|ENSG00000145715|P20936-2|RASA1	nc|ENSG00000145715|P20936-2|RASA1	MULTI-MSMS	A375_MHC_IP_R2	2	618.1735229492188	2	617.774396	1233.53424	-0.64321	-0.00039736	-0.058792	-3.632E-05	-0.70201	-0.00043368	617.7743091135757	83.264	1.0182	84.004	83.645	84.663	0.73962					54	19	4	0	0	0	0.034481	2	31580	31580;31763		71.134	35.007	1	27693000			15616	5572	11327	11414	15253;15254	15253					-0.07318571001860619
FSEELAQLY	9	Unmodified	_FSEELAQLY_					0	0	0		nc|ENSG00000151746|Q96G01-4|BICD1;nc|ENSG00000151746|Q96G01-3|BICD1;ENSG00000151746|ENST00000652176|BICD1	nc|ENSG00000151746|Q96G01-4|BICD1	nc|ENSG00000151746|Q96G01-4|BICD1	MULTI-MSMS	A375_MHC_IP_R1	1	550.6682739257812	2	550.268947	1098.52334	-0.48977	-0.0002695	-0.28363	-0.00015607	-0.7734	-0.00042558	550.2685554821161	102.1	0.70911	102.1	101.85	102.56	0					26	13	3	0	0	0	0.44024	1	37542	37542		22.736	2.2827	1	2113700			15617	5926	11328	11415	15255	15255					-0.021979733761327225
FSEEQLNRY	9	Unmodified	_FSEEQLNRY_					0	0	0		nc|ENSG00000064995|Q15544-2|TAF11;ENSG00000064995|ENST00000361288|TAF11	nc|ENSG00000064995|Q15544-2|TAF11	nc|ENSG00000064995|Q15544-2|TAF11	MULTI-MSMS	A375_MHC_IP_R1	1	593.680419921875	2	593.280377	1184.5462	-0.31378	-0.00018616	0.34425	0.00020423	0.030465	1.8074E-05	593.2806199100723	43.581	0.55857	43.581	43.351	43.909	0					24	10	3	0	0	0	0.0066517	1	15146	15146		165.72	79.388	1	11314000			15618	1364	11329	11416	15256	15256					-0.038689542586553216
FSEEQLNRY	9	Unmodified	_FSEEQLNRY_					0	0	0		nc|ENSG00000064995|Q15544-2|TAF11;ENSG00000064995|ENST00000361288|TAF11	nc|ENSG00000064995|Q15544-2|TAF11	nc|ENSG00000064995|Q15544-2|TAF11	MULTI-MSMS	A375_MHC_IP_R2	2	593.6804809570312	2	593.280377	1184.5462	-0.48329	-0.00028673	0.21932	0.00013012	-0.26398	-0.00015661	593.2804197561728	42.945	0.50661	43.718	43.369	43.876	0.7724					18	9	2	0	0	0	0.010852	1	15955	15955		179.17	119.81	1	12910000			15619	1364	11329	11416	15257	15257					-0.038689542586553216
FSEGDEFLF	9	Unmodified	_FSEGDEFLF_					0	0	0			REV__ENST00000510927.5_1_4:106967729-107168455:-|nuORF	REV__ENST00000510927.5_1_4:106967729-107168455:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	364.2830810546875	3	364.16244	1089.46549	0.14807	5.3922E-05	0.40476	0.0001474	0.55283	0.00020132	364.1629901045158	85.793	0.66101	86.529	86.29	86.951	0.73602					21	12	3	0	0	0	0.72507	1	32569	32569		2.7352	0	1	2810500	+		15620	19471	11330	11417	15258	15258					-0.07566235301555935
FSEIDLEKY	9	Unmodified	_FSEIDLEKY_					0	0	0		ENSG00000178700|ENST00000314636|DHFR2	ENSG00000178700|ENST00000314636|DHFR2	ENSG00000178700|ENST00000314636|DHFR2	MULTI-MSMS	A375_MHC_IP_R1	1	572.681640625	2	572.282054	1142.54956	-0.25553	-0.00014623	0.13902	7.9561E-05	-0.1165	-6.6671E-05	572.2820797447392	74.576	1.1655	74.576	74.247	75.413	0					63	22	5	0	0	0	0.26911	1	27338	27338		41.956	13.469	1	59556000			15621	8173	11331	11418	15259	15259					-0.016017042046541974
FSEIDLEKY	9	Unmodified	_FSEIDLEKY_					0	0	0		ENSG00000178700|ENST00000314636|DHFR2	ENSG00000178700|ENST00000314636|DHFR2	ENSG00000178700|ENST00000314636|DHFR2	MULTI-SECPEP	A375_MHC_IP_R1	1	571.6796875	2	572.282054	1142.54956	-0.25927	-0.00014838	0.05721	3.274E-05	-0.20206	-0.00011564	572.2819799378667	73.969	0.81069	73.969	73.437	74.247	0					46	15	5	0	0	0	0.0082179	1	26945	26945		165.72	90.791	1	47387000			15622	8173	11331	11418	15260	15260					-0.016017042046541974
FSEIDLEKY	9	Unmodified	_FSEIDLEKY_					0	0	0		ENSG00000178700|ENST00000314636|DHFR2	ENSG00000178700|ENST00000314636|DHFR2	ENSG00000178700|ENST00000314636|DHFR2	MULTI-SECPEP	A375_MHC_IP_R2	2	571.6793212890625	2	572.282054	1142.54956	-0.20983	-0.00012008	-0.030617	-1.7522E-05	-0.24044	-0.0001376	572.2819370610978	73.374	0.96545	74.11	73.328	74.294	0.73541					47	18	5	0	0	0	0.0037789	1	27853	27853		181.69	106.76	1	48221000			15623	8173	11331	11418	15261	15261					-0.016017042046541974
FSELELQEW	9	Unmodified	_FSELELQEW_					0	0	0		ENSG00000121905|ENST00000373467|HPCA;HPCA|p.E21K|1|0.82|ENSG00000121905|chr1:32888959-32888959|G/A|missense_variant	ENSG00000121905|ENST00000373467|HPCA	ENSG00000121905|ENST00000373467|HPCA	MULTI-MSMS	A375_MHC_IP_R2	2	590.6748046875	2	590.779679	1179.5448	-0.92837	-0.00054846	0.35735	0.00021112	-0.57102	-0.00033735	591.2824279172601	59.78	0.70926	60.527	60.299	61.008	0.74714					26	13	3	0	0	0	0.29981	1	22649	22649		30.637	10.183	1	5653200			15624	3749	11332	11419	15262	15262					-0.03778588347427103
FSELNGRLN	9	Unmodified	_FSELNGRLN_					0	0	0			REV__ENSG00000132357|ENST00000254691|CARD6	REV__ENSG00000132357|ENST00000254691|CARD6	MSMS	A375_MHC_IP_R2	2	525.1800537109375	2	525.272355	1048.53016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.917	1	32.654	32.154	33.154	0.73691								0	0	0	0.14677	1	11314	11314		26.884	5.3467	1		+		15625	18646	11333	11420	15263	15263					0.007833842951185943
FSENEKNAAYY	11	Unmodified	_FSENEKNAAYY_					0	0	0		ENSG00000081019|ENST00000261441|RSBN1;nc|ENSG00000081019|Q5VWQ0-4|RSBN1	ENSG00000081019|ENST00000261441|RSBN1	ENSG00000081019|ENST00000261441|RSBN1	MULTI-MSMS	A375_MHC_IP_R1	1	668.6957397460938	2	668.296224	1334.5779	-0.58712	-0.00039237	-0.24525	-0.0001639	-0.83237	-0.00055627	668.2960853026258	33.998	0.3558	33.998	33.848	34.203	0					11	6	2	0	0	0	0.011476	1	11191	11191		92.201	63.706	1	3015800			15626	1728	11334	11421	15264	15264					-0.0760100629538556
FSENEKNAAYY	11	Unmodified	_FSENEKNAAYY_					0	0	0		ENSG00000081019|ENST00000261441|RSBN1;nc|ENSG00000081019|Q5VWQ0-4|RSBN1	ENSG00000081019|ENST00000261441|RSBN1	ENSG00000081019|ENST00000261441|RSBN1	MULTI-MSMS	A375_MHC_IP_R2	2	668.6953125	2	668.296224	1334.5779	-1.1424	-0.00076346	0.14178	9.4748E-05	-1.0006	-0.00066871	668.2962091626273	33.375	0.35612	34.127	33.942	34.298	0.75225					11	6	2	0	0	0	0.011476	1	11970	11970		92.201	57.269	1	2598900			15627	1728	11334	11421	15265	15265					-0.0760100629538556
FSEPGAIK	8	Unmodified	_FSEPGAIK_					0	0	0		SPRR3|p.P126S|1|0.39|ENSG00000163209|chr1:153003396-153003396|C/T|missense_variant	SPRR3|p.P126S|1|0.39|ENSG00000163209|chr1:153003396-153003396|C/T|missense_variant	SPRR3|p.P126S|1|0.39|ENSG00000163209|chr1:153003396-153003396|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	425.12890625	2	424.729261	847.443968	-0.2317	-9.8408E-05	0.19568	8.3111E-05	-0.036014	-1.5296E-05	424.729225917333	32.863	0.71278	33.6	33.112	33.825	0.73692					25	13	3	0	0	0	0.1699	1	11727	11727		71.134	37.031	1	5907500			15628	29238	11335	11422	15266	15266					0.014144244603812695
FSEPHARFY	9	Unmodified	_FSEPHARFY_					0	0	0		nc|ENSG00000142875|P22694-8|PRKACB;ENST00000536649.5_1_19:14208073-14223129:-|nuORF;nc|ENSG00000142875|P22694-10|PRKACB;nc|ENSG00000142875|P22694-4|PRKACB;nc|ENSG00000142875|P22694-3|PRKACB;nc|ENSG00000072062|P17612-2|PRKACA;nc|ENSG00000142875|P22694|PRKACB;ENSG00000072062|ENST00000308677|PRKACA;nc|ENSG00000142875|P22694-5|PRKACB;nc|ENSG00000142875|P22694-7|PRKACB;nc|ENSG00000142875|P22694-6|PRKACB;nc|ENSG00000142875|P22694-9|PRKACB;ENSG00000142875|ENST00000370685|PRKACB	nc|ENSG00000142875|P22694-8|PRKACB	nc|ENSG00000142875|P22694-8|PRKACB	MULTI-SECPEP	A375_MHC_IP_R1	1	385.5858154296875	3	385.185691	1152.53524	0.0021236	8.1799E-07	0.075264	2.8991E-05	0.077388	2.9809E-05	385.18562408603583	41.7	0.56199	41.7	41.47	42.032	0					20	10	3	0	0	0	0.67483	1	14426	14426		3.8763	2.683	1	4671900			15629	1526	11336	11423	15267	15267					-0.03492311842273921
FSEPHARFY	9	Unmodified	_FSEPHARFY_					0	0	0		nc|ENSG00000142875|P22694-8|PRKACB;ENST00000536649.5_1_19:14208073-14223129:-|nuORF;nc|ENSG00000142875|P22694-10|PRKACB;nc|ENSG00000142875|P22694-4|PRKACB;nc|ENSG00000142875|P22694-3|PRKACB;nc|ENSG00000072062|P17612-2|PRKACA;nc|ENSG00000142875|P22694|PRKACB;ENSG00000072062|ENST00000308677|PRKACA;nc|ENSG00000142875|P22694-5|PRKACB;nc|ENSG00000142875|P22694-7|PRKACB;nc|ENSG00000142875|P22694-6|PRKACB;nc|ENSG00000142875|P22694-9|PRKACB;ENSG00000142875|ENST00000370685|PRKACB	nc|ENSG00000142875|P22694-8|PRKACB	nc|ENSG00000142875|P22694-8|PRKACB	MULTI-MSMS	A375_MHC_IP_R2	2	385.5852355957031	3	385.185691	1152.53524	-0.35342	-0.00013613	-0.17628	-6.7902E-05	-0.5297	-0.00020403	385.18559386618426	40.913	0.45643	41.687	41.489	41.946	0.77451					19	8	3	0	0	0	0.27715	1	15170	15170		23.79	15.038	1	5425900			15630	1526	11336	11423	15268	15268					-0.03492311842273921
FSEPRAVFY	9	Unmodified	_FSEPRAVFY_					0	0	0		nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-5|PKN2	nc|ENSG00000065243|Q16513-2|PKN2	nc|ENSG00000065243|Q16513-2|PKN2	MULTI-SECPEP	A375_MHC_IP_R1	1	558.6785888671875	2	558.279649	1114.54475	-0.35792	-0.00019982	-0.16029	-8.9487E-05	-0.51821	-0.00028931	558.279683792026	70.367	0.61376	70.367	70.034	70.648	0					16	11	2	0	0	0	0.47674	1	25541	25541		29.841	8.0939	1	2126600			15631	1372	11337	11424	15269	15269					-0.007945435567535242
FSEQKNYSI	9	Unmodified	_FSEQKNYSI_					0	0	0		tr|U7SJG1|U7SJG1_FUSNUDiaminopimelateepimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02128PE=4SV=1	tr|U7SJG1|U7SJG1_FUSNUDiaminopimelateepimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02128PE=4SV=1	tr|U7SJG1|U7SJG1_FUSNUDiaminopimelateepimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02128PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	558.19189453125	2	558.272021	1114.52949	-0.80379	-0.00044873	-1.4858	-0.0008295	-2.2896	-0.0012782	558.2713713833593	66.816	1.222	67.552	66.882	68.104	0.73631					28	23	2	0	0	0	0.29981	1	25419	25419		30.637	6.616	1	3217600			15632	29450	11338	11425	15270	15270					-0.023194551446067635
FSEQVAMGY	9	Oxidation (M)	_FSEQVAM(Oxidation (M))GY_		FSEQVAM(1)GY		FSEQVAM(160)GY	0	0	1		ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-MSMS	A375_MHC_IP_R1	1	524.6261596679688	2	524.226225	1046.4379	-0.45785	-0.00024002	-0.057914	-3.036E-05	-0.51576	-0.00027038	524.226173268761	52.226	1.1681	52.226	51.829	52.997	0					45	22	3	0	0	0	0.003087	1	18491	18491		158.2	103.43	1	12965000			15633	8201	11339	11426	15271	15271		398			-0.08346461833457397
FSEQVAMGY	9	Oxidation (M)	_FSEQVAM(Oxidation (M))GY_		FSEQVAM(1)GY		FSEQVAM(170)GY	0	0	1		ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-MSMS	A375_MHC_IP_R2	2	524.6251831054688	2	524.226225	1046.4379	-0.77491	-0.00040623	-0.72391	-0.00037949	-1.4988	-0.00078572	524.2259633848245	51.576	0.91621	52.328	51.966	52.882	0.75225					43	17	3	0	0	0	0.0090874	2	19390	19390;19434		172.91	111.55	1	13131000			15634	8201	11339	11426	15272;15273	15272		398			-0.08346461833457397
FSESADGRD	9	Unmodified	_FSESADGRD_					0	0	0		ENST00000494258.5_1_2:201997525-201997775:+|nuORF	ENST00000494258.5_1_2:201997525-201997775:+|nuORF	ENST00000494258.5_1_2:201997525-201997775:+|nuORF	MSMS	A375_MHC_IP_R2	2	492.11419677734375	2	492.206878	982.399203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.572	1	75.31	74.81	75.81	0.73752								0	0	0	0.15486	1	28305	28305		9.3831	0.035688	1				15635	12688	11340	11427	15274	15274					-0.09270051143607816
FSESFLCSRPV	11	Unmodified	_FSESFLCSRPV_					0	0	0			REV__nc|ENSG00000101343|Q9BZJ0-3|CRNKL1	REV__nc|ENSG00000101343|Q9BZJ0-3|CRNKL1	MULTI-MSMS	A375_MHC_IP_R2	2	424.60858154296875	3	424.541146	1270.60161	-0.18922	-8.0332E-05	0.63521	0.00026967	0.44599	0.00018934	424.54131509709646	75.343	0.40661	76.084	75.825	76.232	0.74052					10	7	2	0	0	0	0.73016	1	28656	28656		4.4062	0.52982	1	1266900	+		15636	27149	11341	11428	15275	15275					-0.0228686406255747
FSESFSSLLKN	11	Unmodified	_FSESFSSLLKN_					0	0	0		WEE2|p.L455F|1|0.21|ENSG00000214102|chr7:141725167-141725167|C/T|missense_variant	WEE2|p.L455F|1|0.21|ENSG00000214102|chr7:141725167-141725167|C/T|missense_variant	WEE2|p.L455F|1|0.21|ENSG00000214102|chr7:141725167-141725167|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	629.8748168945312	2	629.819335	1257.62412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.188	1	96.188	95.688	96.688	0								0	0	0	0.16191	1	35352	35352		8.7454	0.83525	1				15637	30164	11342	11429	15276	15276					0.0056105860674051655
FSETGGGEKY	10	Unmodified	_FSETGGGEKY_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MSMS	A375_MHC_IP_R1	1	538.1403198242188	2	537.740554	1073.46655	-0.7727	-0.00041551	0.071643	3.8525E-05	-0.70106	-0.00037699	537.7405520171258	24.622	0.55562	24.622	24.397	24.953	0					30	10	4	0	0	0	0.011235	1	7036	7036		124.95	74.098	1	25568000			15638	8815	11343	11430	15277	15277					-0.06724020932642816
FSETGGGEKY	10	Unmodified	_FSETGGGEKY_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MSMS	A375_MHC_IP_R2	2	538.15771484375	2	537.740554	1073.46655	-1.1383	-0.00061209	0.12654	6.8047E-05	-1.0117	-0.00054405	537.740624233005	24.057	0.61151	24.701	24.499	25.11	0.64368					34	11	4	0	0	0	0.0044556	3	7925	7837;7925;7995		114.5	63.642	1	15579000			15639	8815	11343	11430	15278;15279;15280	15279					-0.06724020932642816
FSEVNMQEY	9	Unmodified	_FSEVNMQEY_					0	0	0		nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L;nc|ENSG00000185404|Q9H930-3|SP140L;nc|ENSG00000185404|Q9H930-1|SP140L	nc|ENSG00000185404|Q9H930-2|SP140L	nc|ENSG00000185404|Q9H930-2|SP140L	MULTI-MSMS	A375_MHC_IP_R1	1	574.1423950195312	2	573.742239	1145.46993	0.092034	5.2804E-05	-0.012914	-7.4093E-06	0.07912	4.5394E-05	573.742123415028	69.18	0.50739	69.18	68.819	69.326	0					15	9	2	0	0	0	0.11629	1	25102	25102		47.749	30.636	1	2325300			15640	8663	11344	11431	15281	15281					-0.0969909415030088
FSFAKYSHV	9	Unmodified	_FSFAKYSHV_					0	0	0			REV__ENSG00000139144|ENST00000538779|PIK3C2G	REV__ENSG00000139144|ENST00000538779|PIK3C2G	MULTI-MSMS	A375_MHC_IP_R1	1	543.6726684570312	2	543.274367	1084.53418	-0.40455	-0.00021978	-2.0363	-0.0011063	-2.4409	-0.0013261	543.2730426719869	37.479	0.40937	37.479	37.249	37.658	0					16	7	3	0	0	0	0.46465	1	12657	12657		21.537	5.6898	1	2604600	+		15641	19135	11345	11432	15282	15282					-0.004705262112111086
FSFFIGHYL	9	Unmodified	_FSFFIGHYL_					0	0	0		nc|ENSG00000155016|Q7Z449-2|CYP2U1;ENST00000513302.1_1_4:108852745-108856764:+|nuORF;ENST00000508453.1_1_4:108852799-108857674:+|nuORF;CYP2U1|p.T525Ffs*17|1|0.06|ENSG00000155016|chr4:107950359-107950360|-/ATTTCAAAAA|frameshift_variant;ENSG00000155016|ENST00000332884|CYP2U1	nc|ENSG00000155016|Q7Z449-2|CYP2U1	nc|ENSG00000155016|Q7Z449-2|CYP2U1	MSMS	A375_MHC_IP_R1	1	565.6852416992188	2	565.78711	1129.55967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.843	1	78.843	78.343	79.343	0								0	0	0	0.13805	1	28776	28776		30.225	6.2042	1				15642	12928	11346	11433	15283	15283					6.948311215637659E-05
FSFGSNLQQH	10	Unmodified	_FSFGSNLQQH_					0	0	0		nc|ENSG00000121406|Q6P9A3-2|ZNF549;ENSG00000121406|ENST00000376233|ZNF549	nc|ENSG00000121406|Q6P9A3-2|ZNF549	nc|ENSG00000121406|Q6P9A3-2|ZNF549	MULTI-MSMS	A375_MHC_IP_R1	1	583.1758422851562	2	582.775262	1163.53597	-0.069397	-4.0443E-05	1.0586	0.00061692	0.98919	0.00057648	582.7759065646195	110.36	0.76233	110.36	109.99	110.75	0					27	14	3	0	0	0	0.68638	1	40545	40545		14.405	2.7651	1	2793800			15643	3720	11347	11434	15284	15284					-0.03925517193238193
FSFKKPFKL	9	Unmodified	_FSFKKPFKL_					0	0	0		ENSG00000175130|ENST00000329421|MARCKSL1	ENSG00000175130|ENST00000329421|MARCKSL1	ENSG00000175130|ENST00000329421|MARCKSL1	MSMS	A375_MHC_IP_R1	1	381.2504577636719	3	381.23046	1140.66955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.468	1	57.468	56.968	57.968	0								0	0	0	0.15061	1	20617	20617		20.581	12.972	1				15644	7936	11348	11435	15285	15285					0.10484373650410816
FSFLLLYFR	9	Unmodified	_FSFLLLYFR_					0	0	0			REV__PTGFR|p.E197K|1|0.62|ENSG00000122420|chr1:78493332-78493332|G/A|missense_variant	REV__PTGFR|p.E197K|1|0.62|ENSG00000122420|chr1:78493332-78493332|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	603.5084228515625	2	603.33951	1204.66447	-0.36151	-0.00021811	-0.88765	-0.00053555	-1.2492	-0.00075366	603.8383748175085	90.223	0.35679	90.955	90.699	91.056	0.7318					9	6	2	0	0	0	0.78798	1	34308	34308		1.6526	0.17072	1	2283900	+		15645	18205	11349	11436	15286	15286					0.07032069787805995
FSFNLLPAP	9	Unmodified	_FSFNLLPAP_					0	0	0			REV__ENST00000450269.5_1_1:45274176-45274422:+|nuORF	REV__ENST00000450269.5_1_1:45274176-45274422:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	503.68951416015625	2	503.273835	1004.53312	-0.13582	-6.8356E-05	4.1069	0.0020669	3.9711	0.0019985	503.27655746623986	71.891	0.20271	71.891	71.765	71.968	0					5	3	2	0	0	0	0.60917	1	26101	26101		9.3831	0	1	983090	+		15646	24882	11350	11437	15287	15287					0.03103259419913229
FSFPLSRDVFN	11	Unmodified	_FSFPLSRDVFN_					0	0	0		ENSG00000221937|ENST00000408947|TAS2R40	ENSG00000221937|ENST00000408947|TAS2R40	ENSG00000221937|ENST00000408947|TAS2R40	MULTI-MSMS	A375_MHC_IP_R2	2	444.28076171875	3	443.559305	1327.65609	-0.69189	-0.00030689	-1.3206	-0.00058576	-2.0125	-0.00089265	443.8930252567593	20.342	0.45832	20.953	20.701	21.16	0.61029					19	8	3	0	0	0	0.73016	1	6300	6300		8.7518	5.1591	1	1524700			15647	9673	11351	11438	15288	15288					0.005364710805224604
FSFPVSVGV	9	Unmodified	_FSFPVSVGV_					0	0	0		ENSG00000120875|ENST00000240100|DUSP4;nc|ENSG00000120875|Q13115-2|DUSP4;chr8:29340243-29345370|445|10.06|0.62|4.03|-|ENST00000240101|DUSP4,DUSP4	ENSG00000120875|ENST00000240100|DUSP4	ENSG00000120875|ENST00000240100|DUSP4	MULTI-MSMS	A375_MHC_IP_R1	1	938.1316528320312	1	938.498195	937.490919	0.1663	0.00015607	-0.46882	-0.00043999	-0.30253	-0.00028392	938.497780021537	126.03	0.25049	126.03	125.9	126.15	0					7	4	2	0	0	0	0.11629	1	48153	48153		47.749	21.407	1	27829000			15648	3692	11352	11439	15289	15289					0.019672840115276813
FSFPVSVGV	9	Unmodified	_FSFPVSVGV_					0	0	0		ENSG00000120875|ENST00000240100|DUSP4;nc|ENSG00000120875|Q13115-2|DUSP4;chr8:29340243-29345370|445|10.06|0.62|4.03|-|ENST00000240101|DUSP4,DUSP4	ENSG00000120875|ENST00000240100|DUSP4	ENSG00000120875|ENST00000240100|DUSP4	MULTI-MATCH	A375_MHC_IP_R2	2		1	938.498195	937.490919	-0.1843	-0.00017297	-0.68147	-0.00063956	-0.86577	-0.00081252	938.4971620126029	125.62	0.25163	125.92	125.77	126.02	0.2951	-0.055789	-8.3025E-05	NaN	47.749	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20213000			15649	3692	11352	11439							0.019672840115276813
FSFSPRMPV	9	Unmodified	_FSFSPRMPV_					0	0	0		nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MULTI-SECPEP	A375_MHC_IP_R2	2	533.66943359375	2	534.27077	1066.52699	-0.86654	-0.00046296	1.5527	0.00082956	0.68617	0.0003666	535.2741273487712	32.844	0.60977	33.58	33.317	33.926	0.73691					22	11	3	0	0	0	0.58271	1	11868	11868		20.454	12.543	1	2940000			15650	1630	11353	11440	15290	15290					-0.0036158208329197805
FSFVRVISL	9	Unmodified	_FSFVRVISL_					0	0	0		nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8;ENST00000524925.1_1_11:77817969-77825348:-|nuORF	nc|ENSG00000159063|Q9BVK2-2|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	MULTI-MSMS	A375_MHC_IP_R1	1	534.7161254882812	2	534.316035	1066.61752	-0.57427	-0.00030684	0.14512	7.7542E-05	-0.42915	-0.0002293	534.8173402682427	118.2	0.30498	118.2	117.92	118.22	0					12	5	3	0	0	0	0.053894	1	43450	43450		75.571	42.785	1	12496000			15651	6345	11354	11441	15291	15291					0.08687210236666942
FSFVRVISL	9	Unmodified	_FSFVRVISL_					0	0	0		nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8;ENST00000524925.1_1_11:77817969-77825348:-|nuORF	nc|ENSG00000159063|Q9BVK2-2|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	MULTI-MSMS	A375_MHC_IP_R2	2	534.7164306640625	2	534.316035	1066.61752	-0.64441	-0.00034432	0.92333	0.00049335	0.27892	0.00014903	534.3164819325754	117.1	0.55921	117.76	117.43	117.99	0.65962					20	10	3	0	0	0	0.01023	1	44283	44283		114.19	62.557	1	11434000			15652	6345	11354	11441	15292	15292					0.08687210236666942
FSFYKVER	8	Unmodified	_FSFYKVER_					0	0	0			REV__SLC1A3|p.M73I|1|0.21|ENSG00000079215|chr5:36629487-36629487|G/A|missense_variant	REV__SLC1A3|p.M73I|1|0.21|ENSG00000079215|chr5:36629487-36629487|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	358.9361877441406	3	359.190553	1074.54983	-0.48888	-0.0001756	-3.287	-0.0011806	-3.7758	-0.0013562	359.1890422284012	23.524	0.50593	24.155	23.979	24.485	0.63014					12	9	2	0	0	0	0.90775	1	7653	7653		21.537	14.435	1	3090900	+		15653	16724	11355	11442	15293	15293					0.01553760305864671
FSFYNSSSI	9	Unmodified	_FSFYNSSSI_					0	0	0		ENST00000295770.3_1_3:31678315-31678555:+|nuORF	ENST00000295770.3_1_3:31678315-31678555:+|nuORF	ENST00000295770.3_1_3:31678315-31678555:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	525.6775512695312	2	526.24019	1050.46583	-0.45541	-0.00023965	-0.11613	-6.111E-05	-0.57153	-0.00030076	526.2403344971077	74.032	0.66143	74.769	74.348	75.009	0.73751					17	12	2	0	0	0	0.71541	1	28002	28002		1.6526	0	1	1066700			15654	10498	11356	11443	15294	15294					-0.05738815581707968
FSFYSILHY	9	Unmodified	_FSFYSILHY_					0	0	0		ENST00000486257.5_1_3:114027142-114027259:+|nuORF	ENST00000486257.5_1_3:114027142-114027259:+|nuORF	ENST00000486257.5_1_3:114027142-114027259:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	392.6294860839844	3	392.862325	1175.56515	-0.52457	-0.00020609	0.72515	0.00028488	0.20057	7.8798E-05	392.86250696598444	21.236	0.3031	21.855	21.625	21.928	0.61932					7	5	2	0	0	0	0.78753	1	6687	6687		4.897	2.6142	1	994370			15655	12580	11357	11444	15295	15295					-0.015613728969356089
FSFYSSYL	8	Unmodified	_FSFYSSYL_					0	0	0		ENSG00000196466|ENST00000430385|ZNF799;nc|ENSG00000196466|Q96GE5-2|ZNF799;ENSG00000180855|ENST00000301547|ZNF443	ENSG00000196466|ENST00000430385|ZNF799	ENSG00000196466|ENST00000430385|ZNF799	MULTI-SECPEP	A375_MHC_IP_R1	1	507.6338806152344	2	507.234376	1012.4542	-0.37506	-0.00019024	-0.26075	-0.00013226	-0.63581	-0.00032251	507.2342504684918	60.049	0.76239	60.049	59.701	60.464	0					22	14	2	0	0	0	0.94479	1	21623	21623		8.5933	0	1	1251800			15656	8320	11358	11445	15296	15296					-0.0515301260504657
FSGDDKGKIV	10	Unmodified	_FSGDDKGKIV_					0	0	0		ENSG00000196663|ENST00000359520|TECPR2;nc|ENSG00000196663|O15040-2|TECPR2;ENST00000561228.1_1_14:102843052-102891354:+|nuORF	ENSG00000196663|ENST00000359520|TECPR2	ENSG00000196663|ENST00000359520|TECPR2	MULTI-SECPEP	A375_MHC_IP_R1	1	533.6693115234375	2	533.282389	1064.55022	-0.63597	-0.00033915	-1.933	-0.0010308	-2.569	-0.00137	533.2814886334791	34.012	0.30488	34.012	33.798	34.103	0					9	5	2	0	0	0	0.91556	1	11112	11112		6.2058	1.4498	1	1215100			15657	9072	11359	11446	15297	15297					0.020531352350417365
FSGDQSYLY	9	Unmodified	_FSGDQSYLY_					0	0	0			REV__nc|ENSG00000278540|Q13085-3|ACACA	REV__nc|ENSG00000278540|Q13085-3|ACACA	MULTI-MSMS	A375_MHC_IP_R2	2	541.187744140625	2	540.237647	1078.46074	-0.65552	-0.00035414	0.58958	0.00031851	-0.065942	-3.5625E-05	540.2376577682157	46.827	1.2735	47.588	47.258	48.532	0.76128					58	24	4	0	0	0	0.38603	1	17479	17479		25.399	7.253	1	62368000	+		15658	22979	11360	11447	15298	15298					-0.07535119444310112
FSGGKSGPVE	10	Unmodified	_FSGGKSGPVE_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2;HSPG2|p.L3967Q|1|0.28|ENSG00000142798|chr1:21829475-21829475|A/T|missense_variant	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MSMS	A375_MHC_IP_R2	2	482.6600036621094	2	482.740357	963.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.609	1	57.359	56.859	57.859	0.75015								0	0	0	0.14673	1	21399	21399		24.021	4.5816	1				15659	5332	11361	11448	15299	15299					-0.017033958618412726
FSGIRNISF	9	Unmodified	_FSGIRNISF_					0	0	0		ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF	ENSG00000137845|ENST00000260408|ADAM10	ENSG00000137845|ENST00000260408|ADAM10	MULTI-MSMS	A375_MHC_IP_R1	1	521.4822998046875	2	520.779816	1039.54508	-0.3246	-0.00016905	0.1352	7.041E-05	-0.1894	-9.8636E-05	520.7797510822855	78.633	0.75875	78.633	78.352	79.111	0					47	14	5	0	0	0	0.085252	1	28723	28723		53.317	19.214	1	17985000			15660	4929	11362	11449	15300	15300					0.026888761630971203
FSGIRNISF	9	Unmodified	_FSGIRNISF_					0	0	0		ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF	ENSG00000137845|ENST00000260408|ADAM10	ENSG00000137845|ENST00000260408|ADAM10	MULTI-SECPEP	A375_MHC_IP_R2	2	521.1798095703125	2	520.779816	1039.54508	-0.63296	-0.00032963	0.23561	0.0001227	-0.39735	-0.00020693	520.7797727926937	77.807	0.71436	78.55	78.265	78.98	0.74293					48	13	5	0	0	0	0.1952	1	29527	29527		53.317	24.235	1	16146000			15661	4929	11362	11449	15301	15301					0.026888761630971203
FSGLFISPK	9	Unmodified	_FSGLFISPK_					0	0	0		ENSG00000170927|ENST00000371117|PKHD1;nc|ENSG00000170927|P08F94-2|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	498.6524353027344	2	498.28166	994.548768	-0.096833	-4.825E-05	-1.6728	-0.00083352	-1.7696	-0.00088177	498.280453566744	69.147	0.50669	69.147	68.769	69.275	0					14	9	2	0	0	0	0.76827	1	25101	25101		6.7232	4.6634	1	1338000			15662	7561	11363	11450	15302	15302					0.05127545936943534
FSGLRVEV	8	Unmodified	_FSGLRVEV_					0	0	0		ENST00000593199.5_1_19:10766238-10781231:+|nuORF	ENST00000593199.5_1_19:10766238-10781231:+|nuORF	ENST00000593199.5_1_19:10766238-10781231:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	453.1583251953125	2	453.75581	905.497067	-0.03946	-1.7905E-05	0.045171	2.0497E-05	0.0057113	2.5915E-06	453.75587714997357	47.173	0.30672	47.935	47.715	48.022	0.76128					12	5	3	0	0	0	0.84748	1	17616	17616		36.044	0	1	2013200			15663	13825	11364	11451	15303	15303					0.04053802243049631
FSGSDSLSD	9	Unmodified	_FSGSDSLSD_					0	0	0			REV__nc|ENSG00000101868|P09884|POLA1	REV__nc|ENSG00000101868|P09884|POLA1	MULTI-SECPEP	A375_MHC_IP_R2	2	913.6259155273438	1	914.373782	913.366506	-0.34876	-0.0003189	1.3668	0.0012497	1.018	0.00093084	914.3751870534621	120.94	0.25139	121.38	121.27	121.52	0.44488					5	4	2	0	0	0	0.71541	1	46222	46222		16.942	8.349	1	11395000	+		15664	27151	11365	11452	15304	15304					-0.09364258266464276
FSGSFSTPLSY	11	Unmodified	_FSGSFSTPLSY_					0	0	0			REV__nc|ENSG00000173744|P52594-2|AGFG1	REV__nc|ENSG00000173744|P52594-2|AGFG1	MULTI-SECPEP	A375_MHC_IP_R1	1	596.0114135742188	2	596.779679	1191.5448	-0.20128	-0.00012012	-0.67165	-0.00040083	-0.87293	-0.00052095	596.7794225596956	71.72	0.55289	71.72	71.262	71.815	0					11	10	2	0	0	0	0.86796	1	26062	26062		20.415	2.2682	1	2828000	+		15665	21246	11366	11453	15305	15305					-0.04330588347397679
FSGSGIKRV	9	Unmodified	_FSGSGIKRV_					0	0	0			REV__nc|ENSG00000113712|P48729-3|CSNK1A1	REV__nc|ENSG00000113712|P48729-3|CSNK1A1	MULTI-SECPEP	A375_MHC_IP_R2	2	476.17431640625	2	475.774534	949.534515	-0.92319	-0.00043923	0.20823	9.9071E-05	-0.71496	-0.00034016	475.774547865104	26.423	0.40534	27.083	26.857	27.262	0.65992					9	7	2	0	0	0	0.4261	1	8962	8962		30.637	0	1	2618700	+		15666	17797	11367	11454	15306	15306					0.05772893508662946
FSGWLWTY	8	Unmodified	_FSGWLWTY_					0	0	0			REV__ENSG00000166856|ENST00000300098|GPR182	REV__ENSG00000166856|ENST00000300098|GPR182	MULTI-SECPEP	A375_MHC_IP_R1	1	529.6817626953125	2	530.25036	1058.48617	-0.57849	-0.00030675	0.54706	0.00029008	-0.031427	-1.6664E-05	530.2505045391513	61.548	0.76665	61.548	61.279	62.046	0					21	14	2	0	0	0	0.8824	1	22231	22231		30.225	7.4885	1	2920900	+		15667	20710	11368	11455	15307	15307					-0.04073600131232524
FSHAVGPSHPE	11	Unmodified	_FSHAVGPSHPE_					0	0	0			REV__ENST00000522899.1_1_8:144462370-144462733:+|nuORF	REV__ENST00000522899.1_1_8:144462370-144462733:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	583.806640625	2	582.775262	1163.53597	-0.069397	-4.0443E-05	1.0586	0.00061692	0.98919	0.00057648	582.7759065646195	110.36	0.76233	110.36	109.99	110.75	0					27	14	3	0	0	0	0.69231	1	40463	40463		16.149	1.3108	1	2793800	+		15668	25736	11369	11456	15308	15308					-0.03925517193215455
FSHAVGPSHPE	11	Unmodified	_FSHAVGPSHPE_					0	0	0			REV__ENST00000522899.1_1_8:144462370-144462733:+|nuORF	REV__ENST00000522899.1_1_8:144462370-144462733:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	582.775262	1163.53597	-0.29037	-0.00016922	1.1895	0.00069319	0.89908	0.00052396	582.7756561553937	109.49	0.65938	110.24	110.03	110.69	0.74683	-0.064376	6.4573E-05	NaN	16.149	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2007500	+		15669	25736	11369	11456							-0.03925517193215455
FSHIQSNLH	9	Unmodified	_FSHIQSNLH_					0	0	0			REV__nc|ENSG00000151914|Q03001-3|DST	REV__nc|ENSG00000151914|Q03001-3|DST	MULTI-SECPEP	A375_MHC_IP_R2	2	541.650146484375	2	541.772522	1081.53049	-1.3174	-0.00071373	2.4903	0.0013492	1.1729	0.00063542	542.2769957762985	53.654	0.41073	54.405	54.198	54.609	0.75105					10	7	3	0	0	0	0.69507	1	20192	20192		19.257	1.1106	1	1306400	+		15670	27288	11370	11457	15309	15309					-0.007011959850387939
FSHKVFNF	8	Unmodified	_FSHKVFNF_					0	0	0			REV__ENST00000381103.6_1_5:61681470-61681683:+|nuORF	REV__ENST00000381103.6_1_5:61681470-61681683:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	513.655517578125	2	513.263802	1024.51305	-0.70326	-0.00036096	3.726	0.0019124	3.0227	0.0015515	513.7667496264569	42.045	0.254	42.82	42.659	42.913	0.77451					8	4	2	0	0	0	0.84748	1	15564	15564		28.487	1.6032	1	892110	+		15671	24229	11371	11458	15310	15310					0.0017750847994193464
FSHRIYVAY	9	Unmodified	_FSHRIYVAY_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENST00000525431.1_1_11:125476222-125478225:+|nuORF	ENSG00000134910|ENST00000392708|STT3A	ENSG00000134910|ENST00000392708|STT3A	MSMS	A375_MHC_IP_R2	2	385.93084716796875	3	385.869703	1154.58728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.854	1	44.623	44.123	45.123	0.7691								0	0	0	0.15486	1	16352	16352		11.518	3.9089	1				15672	4626	11372	11459	15311	15311					0.01616851571452571
FSHSNENL	8	Unmodified	_FSHSNENL_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	A375_MHC_IP_R2	2	474.6505432128906	2	474.214506	946.414459	-0.77462	-0.00036734	0.08136	3.8582E-05	-0.69326	-0.00032875	474.21449523326675	35.052	0.60678	35.815	35.576	36.183	0.76338					28	11	3	0	0	0	0.75322	1	12801	12801		19.439	1.304	1	13876000	+		15673	19778	11373	11460	15312	15312					-0.06089139555763268
FSHVSGSW	8	Unmodified	_FSHVSGSW_					0	0	0			REV__ENST00000588741.5_1_18:31206995-31224899:+|nuORF	REV__ENST00000588741.5_1_18:31206995-31224899:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	454.3094482421875	2	453.70886	905.403166	-0.41078	-0.00018637	1.2076	0.00054789	0.7968	0.00036152	453.7094801690832	28.92	0.4046	28.92	28.745	29.149	0					10	7	2	0	0	0	0.91495	1	8954	8954		18.135	4.6271	1	1435800	+		15674	26416	11374	11461	15313	15313					-0.05331916859222474
FSIPDFQRKY	10	Unmodified	_FSIPDFQRKY_					0	0	0		ENSG00000111667|ENST00000229268|USP5;ENST00000537267.5_1_12:6966716-6975238:+|nuORF;nc|ENSG00000111667|P45974-2|USP5	ENSG00000111667|ENST00000229268|USP5	ENSG00000111667|ENST00000229268|USP5	MULTI-MSMS	A375_MHC_IP_R1	1	434.62799072265625	3	434.227667	1299.66117	-0.10241	-4.447E-05	0.41581	0.00018056	0.3134	0.00013609	434.2277616311081	70.805	0.61365	70.805	70.494	71.108	0					26	11	3	0	0	0	0.26272	1	25724	25724		42.835	22.848	1	5833600			15675	3010	11375	11462	15314	15314					0.02332774943147342
FSIPDFQRKY	10	Unmodified	_FSIPDFQRKY_					0	0	0		ENSG00000111667|ENST00000229268|USP5;ENST00000537267.5_1_12:6966716-6975238:+|nuORF;nc|ENSG00000111667|P45974-2|USP5	ENSG00000111667|ENST00000229268|USP5	ENSG00000111667|ENST00000229268|USP5	MULTI-MSMS	A375_MHC_IP_R2	2	434.6277160644531	3	434.227667	1299.66117	-0.19657	-8.5357E-05	-0.33598	-0.00014589	-0.53255	-0.00023125	434.2275845619002	70.099	0.55872	70.834	70.54	71.099	0.73421					28	10	3	0	0	0	0.38461	1	26563	26563		35.08	17.508	1	5442500			15676	3010	11375	11462	15315	15315					0.02332774943147342
FSIQHTYY	8	Unmodified	_FSIQHTYY_					0	0	0		SEMG2|p.H70Y|1|0.15|ENSG00000124157|chr20:45221840-45221840|C/T|missense_variant	SEMG2|p.H70Y|1|0.15|ENSG00000124157|chr20:45221840-45221840|C/T|missense_variant	SEMG2|p.H70Y|1|0.15|ENSG00000124157|chr20:45221840-45221840|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	529.6817626953125	2	529.750724	1057.4869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.961	1	61.706	61.206	62.206	0.74503								0	0	0	0.16876	1	23094	23094		19.439	0.18201	1				15677	29133	11376	11463	15316	15316					-0.03954805482203483
FSITRPLTY	9	Unmodified	_FSITRPLTY_					0	0	0		ENSG00000133019|ENST00000676153|CHRM3;ENSG00000184984|ENST00000383263|CHRM5	ENSG00000133019|ENST00000676153|CHRM3;ENSG00000184984|ENST00000383263|CHRM5	ENSG00000184984|ENST00000383263|CHRM5	MULTI-MSMS	A375_MHC_IP_R1	1	549.70263671875	2	549.303124	1096.5917	-0.6127	-0.00033656	-0.61569	-0.0003382	-1.2284	-0.00067476	549.3028749477916	80.117	0.51036	80.117	79.778	80.289	0					16	9	2	0	0	0	0.030222	1	29241	29241		71.708	37.306	1	3008600			15678	8624;4472	11377	11464	15317	15317					0.04726315994366814
FSITRPLTY	9	Unmodified	_FSITRPLTY_					0	0	0		ENSG00000133019|ENST00000676153|CHRM3;ENSG00000184984|ENST00000383263|CHRM5	ENSG00000133019|ENST00000676153|CHRM3;ENSG00000184984|ENST00000383263|CHRM5	ENSG00000184984|ENST00000383263|CHRM5	MULTI-MSMS	A375_MHC_IP_R2	2	549.7023315429688	2	549.303124	1096.5917	-0.67489	-0.00037072	-0.44128	-0.00024239	-1.1162	-0.00061312	549.3024592731364	79.378	0.45328	80.123	79.796	80.249	0.74474					13	8	2	0	0	0	0.018166	1	30093	30093		74.2	50.179	1	3269600			15679	8624;4472	11377	11464	15318	15318					0.04726315994366814
FSIVRPRRL	9	Unmodified	_FSIVRPRRL_					0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-MSMS	A375_MHC_IP_R2	2	381.9156494140625	3	381.908492	1142.70365	-0.53006	-0.00020244	0.43051	0.00016442	-0.099555	-3.8021E-05	381.90860019250204	37.307	0.35786	38.078	37.917	38.275	0.7709					10	6	2	0	0	0	0.59266	1	13644	13644		15.248	0.8431	1	2147200			15680	1905	11378	11465	15319	15319					0.13800214862021676
FSIVRPRRL	9	Unmodified	_FSIVRPRRL_					0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	381.908492	1142.70365	0.15729	6.0069E-05	0.25243	9.6406E-05	0.40972	0.00015647	381.9086192887745	38.449	0.51128	38.449	38.218	38.73	0	0.18576	-0.00011943	NaN	15.248	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3347800			15681	1905	11378	11465							0.13800214862021676
FSKDELMTL	9	Unmodified	_FSKDELMTL_					0	0	0		tr|U7SYU1|U7SYU1_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00934PE=4SV=1	tr|U7SYU1|U7SYU1_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00934PE=4SV=1	tr|U7SYU1|U7SYU1_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00934PE=4SV=1	MSMS	A375_MHC_IP_R2	2	542.2318115234375	2	542.273175	1082.5318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.104	1	69.839	69.339	70.339	0.73511								0	0	0	0.15411	1	26185	26185		14.838	0.93222	1				15682	29846	11379	11466	15320	15320					-0.006167427311538631
FSKEKEEFI	9	Unmodified	_FSKEKEEFI_					0	0	0		ENST00000474271.1_1_14:104038142-104073571:+|nuORF;ENST00000497901.5_1_14:104029713-104040740:+|nuORF;ENST00000554625.5_1_14:104029338-104040509:+|nuORF;ENSG00000256053|ENST00000409074|COA8;nc|ENSG00000256053|Q96IL0|COA8	ENST00000474271.1_1_14:104038142-104073571:+|nuORF	ENST00000474271.1_1_14:104038142-104073571:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	386.60089111328125	3	386.201007	1155.58119	-0.30907	-0.00011936	0.323	0.00012474	0.013931	5.38E-06	386.20122232682314	49.021	0.86344	49.779	49.434	50.297	0.75737					32	16	3	0	0	0	0.13797	1	18408	18408		33.445	0	1	5330600			15683	9893	11380	11467	15321	15321					0.009622885492717614
FSKELAVRIN	10	Unmodified	_FSKELAVRIN_					0	0	0			REV__nc|ENSG00000143190|P14859-4|POU2F1	REV__nc|ENSG00000143190|P14859-4|POU2F1	MSMS	A375_MHC_IP_R2	2	392.92083740234375	3	392.896029	1175.66626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.436	1	22.055	21.555	22.555	0.61932								0	0	0	0.15152	1	6751	6751		14.957	3.4393	1		+		15684	19338	11381	11468	15322	15322					0.08545078805764206
FSKFHVTI	8	Unmodified	_FSKFHVTI_					0	0	0			REV__nc|ENSG00000057663|Q9H1Y0-2|ATG5	REV__nc|ENSG00000057663|Q9H1Y0-2|ATG5	MULTI-SECPEP	A375_MHC_IP_R2	2	489.1819763183594	2	489.774003	977.533452	-0.70461	-0.0003451	1.3413	0.00065695	0.63673	0.00031185	489.77428191254523	66.308	0.96959	67.045	66.678	67.648	0.73631					34	18	3	0	0	0	0.8824	1	25154	25154		23.148	0	1	1592000	+		15685	16427	11382	11469	15323	15323					0.04378679139745145
FSKGCDLCHY	10	Unmodified	_FSKGCDLCHY_					0	0	0			REV__ENSG00000122386|ENST00000219091|ZNF205	REV__ENSG00000122386|ENST00000219091|ZNF205	MULTI-MSMS	A375_MHC_IP_R1	1	587.1478881835938	2	586.746802	1171.47905	-0.076384	-4.4818E-05	0.47168	0.00027676	0.3953	0.00023194	586.7472171616394	72.095	1.5188	72.095	71.665	73.184	0					88	29	5	0	0	0	0.44858	1	26378	26378		31.268	0.6318	1	69649000	+		15686	18202	11383	11470	15324	15324					-0.09983024065627433
FSKGCDLCHY	10	Unmodified	_FSKGCDLCHY_					0	0	0			REV__ENSG00000122386|ENST00000219091|ZNF205	REV__ENSG00000122386|ENST00000219091|ZNF205	MULTI-MSMS	A375_MHC_IP_R2	2	587.1478881835938	2	586.746802	1171.47905	-0.81511	-0.00047826	0.40726	0.00023896	-0.40785	-0.0002393	586.7472204574973	71.395	1.4169	72.13	71.706	73.122	0.73421					90	27	5	0	0	0	0.44858	1	27248	27248		31.268	0.6318	1	60340000	+		15687	18202	11383	11470	15325	15325					-0.09983024065627433
FSKGCETCEY	10	Unmodified	_FSKGCETCEY_					0	0	0			REV__nc|ENSG00000175395|P17030-2|ZNF25	REV__nc|ENSG00000175395|P17030-2|ZNF25	MSMS	A375_MHC_IP_R2	2	583.6781005859375	2	583.728274	1165.442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.59	1	110.33	109.83	110.83	0.74684								0	0	0	0.15332	1	41353	41353		10.074	2.7847	1		+		15688	21341	11384	11471	15326	15326					-0.13410740402036936
FSKGCKECKY	10	Unmodified	_FSKGCKECKY_					0	0	0			REV__ENSG00000256294|ENST00000262894|ZNF225	REV__ENSG00000256294|ENST00000262894|ZNF225	MULTI-MSMS	A375_MHC_IP_R1	1	597.2034912109375	2	596.778102	1191.54165	-0.20128	-0.00012012	1.9712	0.0011763	1.7699	0.0010562	596.7794225596956	71.72	0.55289	71.72	71.262	71.815	0					11	10	2	0	0	0	0.56097	1	26011	26011		23.79	0	1	2828000	+		15689	22881	11385	11472	15327	15327					-0.04645877997427306
FSKKHQRK	8	Unmodified	_FSKKHQRK_					0	0	0		TSSK3|p.A37T|1|0.37|ENSG00000162526|chr1:32362810-32362810|G/A|missense_variant;ENSG00000162526|ENST00000373534|TSSK3	TSSK3|p.A37T|1|0.37|ENSG00000162526|chr1:32362810-32362810|G/A|missense_variant	TSSK3|p.A37T|1|0.37|ENSG00000162526|chr1:32362810-32362810|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	1058.6497802734375	1	1058.62177	1057.6145	0.087994	9.3153E-05	-3.0929	-0.0032743	-3.0049	-0.0031811	1059.6199712171178	120.45	0.8569	120.98	120.5	121.35	0.5321					21	16	2	0	0	0	0.972	1	45839	45839		2.5775	0	1	38938000			15690	6546	11386	11473	15328	15328					0.08799379902484361
FSKMNLQE	8	Unmodified	_FSKMNLQE_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|457|18.28|0.76|4.59|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI;chr15:89244044-89247629|441|10.02|0.6|4.05|+|ENST00000565255|FANCI,FANCI;nc|ENSG00000140525|Q9NVI1-4|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MSMS	A375_MHC_IP_R2	2	498.65252685546875	2	498.744585	995.474617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.222	1	68.957	68.457	69.457	0.73511								0	0	0	0.16876	1	25852	25852		11.64	1.4569	1				15691	440	11387	11474	15329	15329					-0.023301652168811415
FSKPPNPAL	9	Unmodified	_FSKPPNPAL_					0	0	0		ENST00000474234.5_1_2:113012483-113012558:-|nuORF;ENST00000495264.1_1_2:113007755-113012558:-|nuORF;ENSG00000144161|ENST00000409573|ZC3H8	ENST00000474234.5_1_2:113012483-113012558:-|nuORF	ENST00000474234.5_1_2:113012483-113012558:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	486.17132568359375	2	485.77146	969.528367	-0.23736	-0.0001153	-0.0083945	-4.0778E-06	-0.24575	-0.00011938	485.7714331762695	43.884	1.5282	43.884	43.4	44.928	0					88	29	4	0	0	0	0.024574	1	15193	15193		79.596	28.741	1	122660000			15692	5467	11388	11475	15330	15330					0.04238375277122941
FSKPPNPAL	9	Unmodified	_FSKPPNPAL_					0	0	0		ENST00000474234.5_1_2:113012483-113012558:-|nuORF;ENST00000495264.1_1_2:113007755-113012558:-|nuORF;ENSG00000144161|ENST00000409573|ZC3H8	ENST00000474234.5_1_2:113012483-113012558:-|nuORF	ENST00000474234.5_1_2:113012483-113012558:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	486.1710510253906	2	485.77146	969.528367	-0.48499	-0.0002356	-0.27192	-0.00013209	-0.75691	-0.00036769	485.7713131389996	43.18	1.9222	43.953	43.421	45.343	0.7724					112	37	5	0	0	0	0.015356	1	15984	15984		89.401	38.546	1	104460000			15693	5467	11388	11475	15331	15331					0.04238375277122941
FSKRLLSTY	9	Unmodified	_FSKRLLSTY_					0	0	0		ENST00000467586.5_1_17:74079731-74084011:-|nuORF;nc|ENSG00000182473|Q9UPT5-2|EXOC7;nc|ENSG00000182473|Q9UPT5-5|EXOC7;ENSG00000182473|ENST00000589210|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7	ENST00000467586.5_1_17:74079731-74084011:-|nuORF	ENST00000467586.5_1_17:74079731-74084011:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	372.6133728027344	3	372.213358	1113.61824	0.21684	8.0712E-05	0.15258	5.6792E-05	0.36942	0.0001375	372.21330495693496	41.906	0.5597	41.906	41.674	42.233	0					25	10	4	0	0	0	0.59859	1	14487	14487		14.957	4.8066	1	9817500			15694	8409	11389	11476	15332	15332					0.06598004885699993
FSKRLLSTY	9	Unmodified	_FSKRLLSTY_					0	0	0		ENST00000467586.5_1_17:74079731-74084011:-|nuORF;nc|ENSG00000182473|Q9UPT5-2|EXOC7;nc|ENSG00000182473|Q9UPT5-5|EXOC7;ENSG00000182473|ENST00000589210|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7	ENST00000467586.5_1_17:74079731-74084011:-|nuORF	ENST00000467586.5_1_17:74079731-74084011:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	558.4629516601562	2	557.816399	1113.61824	-0.61917	-0.00034539	-0.27434	-0.00015303	-0.89352	-0.00049842	557.8162202047155	41.906	0.61085	41.906	41.674	42.285	0					21	11	2	0	0	0	0.32966	1	14496	14496		35.612	12.876	1	7345300			15695	8409	11389	11476	15333	15333					0.06598004885699993
FSKRLLSTY	9	Unmodified	_FSKRLLSTY_					0	0	0		ENST00000467586.5_1_17:74079731-74084011:-|nuORF;nc|ENSG00000182473|Q9UPT5-2|EXOC7;nc|ENSG00000182473|Q9UPT5-5|EXOC7;ENSG00000182473|ENST00000589210|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7	ENST00000467586.5_1_17:74079731-74084011:-|nuORF	ENST00000467586.5_1_17:74079731-74084011:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	372.6134033203125	3	372.213358	1113.61824	0.20943	7.7954E-05	-0.28997	-0.00010793	-0.080537	-2.9977E-05	372.21319070932265	40.97	0.60905	41.745	41.489	42.098	0.77451					22	11	3	0	0	0	0.48411	1	15189	15189		20.581	6.1756	1	8212200			15696	8409	11389	11476	15334	15334					0.06598004885699993
FSKRLLSTY	9	Unmodified	_FSKRLLSTY_					0	0	0		ENST00000467586.5_1_17:74079731-74084011:-|nuORF;nc|ENSG00000182473|Q9UPT5-2|EXOC7;nc|ENSG00000182473|Q9UPT5-5|EXOC7;ENSG00000182473|ENST00000589210|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7	ENST00000467586.5_1_17:74079731-74084011:-|nuORF	ENST00000467586.5_1_17:74079731-74084011:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	558.2159423828125	2	557.816399	1113.61824	-0.98891	-0.00055163	-0.0063839	-3.561E-06	-0.99529	-0.00055519	557.8163723173576	40.975	0.35522	41.749	41.54	41.895	0.77451					11	6	2	0	0	0	0.13199	1	15191	15191		61.09	28.304	1	5068100			15697	8409	11389	11476	15335	15335					0.06598004885699993
FSKRRKADKE	10	Unmodified	_FSKRRKADKE_					0	0	0		ENSG00000102218|ENST00000218340|RP2	ENSG00000102218|ENST00000218340|RP2	ENSG00000102218|ENST00000218340|RP2	MULTI-SECPEP	A375_MHC_IP_R1	1	633.2076416015625	2	632.85966	1263.70477	-0.80532	-0.00050965	0.15651	9.9046E-05	-0.64881	-0.00041061	633.3610633586792	94.587	0.40912	94.587	94.343	94.752	0					13	7	2	0	0	0	0.92227	1	34752	34752		13.042	4.2971	1	2418500			15698	2364	11390	11477	15336	15336					0.0834638444025586
FSKSDLVNW	9	Unmodified	_FSKSDLVNW_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-SECPEP	A375_MHC_IP_R2	2	547.661376953125	2	548.277106	1094.53966	-0.82894	-0.00045449	-0.75386	-0.00041333	-1.5828	-0.00086782	548.2767636552238	74.533	0.86369	75.271	74.706	75.57	0.73752					40	16	4	0	0	0	0.20645	1	28280	28280		47.749	17.112	1	8582900			15699	1676	11391	11478	15337	15337					-0.0038284741938241496
FSKSDLVNW	9	Unmodified	_FSKSDLVNW_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MATCH	A375_MHC_IP_R1	1		2	548.277106	1094.53966	-0.53431	-0.00029295	-1.0659	-0.00058439	-1.6002	-0.00087734	548.2765698602406	75.315	1.1143	75.315	74.4	75.514	0	0.022469	-0.00015041	NaN	39.95	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8606800			15700	1676	11391	11478							-0.0038284741938241496
FSKSKDEGW	9	Unmodified	_FSKSKDEGW_					0	0	0		ASCC3|p.P2108S|1|0.5|ENSG00000112249|chr6:100510071-100510071|G/A|missense_variant	ASCC3|p.P2108S|1|0.5|ENSG00000112249|chr6:100510071-100510071|G/A|missense_variant	ASCC3|p.P2108S|1|0.5|ENSG00000112249|chr6:100510071-100510071|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	542.2211303710938	2	542.258914	1082.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.262	1	69.262	68.762	69.762	0								0	0	0	0.15069	1	25131	25131		20.454	6.5476	1				15701	190	11392	11479	15338	15338					-0.03467724316078602
FSKVDLHFMKK	11	Unmodified	_FSKVDLHFMKK_					0	0	0		nc|ENSG00000144290|Q6U841-2|SLC4A10;nc|ENSG00000144290|Q6U841-3|SLC4A10	nc|ENSG00000144290|Q6U841-2|SLC4A10	nc|ENSG00000144290|Q6U841-2|SLC4A10	MSMS	A375_MHC_IP_R2	2	690.376708984375	2	690.37884	1378.74313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.13	1	121.58	121.08	122.08	0.44488								0	0	0	0.16176	1	46297	46297		9.544	2.9136	1				15702	14657	11393	11480	15339	15339					0.06890554030542262
FSLCCCCCS	9	Unmodified	_FSLCCCCCS_					0	0	0		ENSG00000180758|ENST00000377411|GPR157	ENSG00000180758|ENST00000377411|GPR157	ENSG00000180758|ENST00000377411|GPR157	MSMS	A375_MHC_IP_R2	2	484.6454772949219	2	484.643787	967.273022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.749	1	30.448	29.948	30.948	0.69872								0	0	0	0.15486	1	10413	10413		2.0598	1.535	1				15703	8313	11394	11481	15340	15340					-0.21192379832427832
FSLFLGFKR	9	Unmodified	_FSLFLGFKR_					0	0	0		ENST00000492310.5_1_7:43153648-43477745:+|nuORF	ENST00000492310.5_1_7:43153648-43477745:+|nuORF	ENST00000492310.5_1_7:43153648-43477745:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	558.223876953125	2	557.824027	1113.6335	-0.64489	-0.00035974	0.10632	5.9305E-05	-0.53858	-0.00030043	557.824011732659	80.319	0.66093	80.319	79.931	80.592	0					25	12	3	0	0	0	0.72623	1	29316	29316		13.906	3.8321	1	4447800			15704	12669	11395	11482	15341	15341					0.0812291647357597
FSLIRPLKKFC	11	Unmodified	_FSLIRPLKKFC_					0	0	0			REV__nc|ENSG00000115464|Q70CQ2-3|USP34	REV__nc|ENSG00000115464|Q70CQ2-3|USP34	MULTI-MSMS	A375_MHC_IP_R2	2	676.7314453125	2	676.399576	1350.7846	-0.71331	-0.00048248	-0.57065	-0.00038598	-1.284	-0.00086847	676.3969317445013	106.25	0.25472	107.01	106.88	107.14	0.75977					6	4	2	0	0	0	0.7362	1	40132	40132		2.9952	0	1	942130	+		15705	17889	11396	11483	15342	15342					0.12323734789902119
FSLKNVKHF	9	Unmodified	_FSLKNVKHF_					0	0	0		ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENST00000590556.1_1_19:14521762-14522332:-|nuORF	ENSG00000123136|ENST00000242776|DDX39A	ENSG00000123136|ENST00000242776|DDX39A	MULTI-MSMS	A375_MHC_IP_R1	1	374.2684631347656	3	373.881831	1118.62366	0.077992	2.916E-05	0.32868	0.00012289	0.40668	0.00015205	373.8819155546852	38.02	0.71377	38.02	37.761	38.475	0					19	13	2	0	0	0	0.056914	2	12852	12852;12873		61.602	32.165	1	10016000			15706	3828	11397	11484	15343;15344	15343					0.06909728468190224
FSLKNVKHF	9	Unmodified	_FSLKNVKHF_					0	0	0		ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENST00000590556.1_1_19:14521762-14522332:-|nuORF	ENSG00000123136|ENST00000242776|DDX39A	ENSG00000123136|ENST00000242776|DDX39A	MULTI-MSMS	A375_MHC_IP_R2	2	374.28179931640625	3	373.881831	1118.62366	-0.28267	-0.00010569	1.4281	0.00053395	1.1455	0.00042826	373.8819723302977	37.019	0.812	37.79	37.308	38.12	0.7709					31	15	4	0	0	0	0.052747	1	13521	13521		63.227	31.592	1	10288000			15707	3828	11397	11484	15345	15345					0.06909728468190224
FSLKQSKHL	9	Unmodified	_FSLKQSKHL_					0	0	0		ENST00000483186.1_1_9:77435204-77442805:-|nuORF;nc|ENSG00000119121|Q9BX84-6|TRPM6;nc|ENSG00000119121|Q9BX84-5|TRPM6;nc|ENSG00000119121|Q9BX84-4|TRPM6;nc|ENSG00000119121|Q9BX84-3|TRPM6;nc|ENSG00000119121|Q9BX84-2|TRPM6;ENSG00000119121|ENST00000360774|TRPM6	ENST00000483186.1_1_9:77435204-77442805:-|nuORF	ENST00000483186.1_1_9:77435204-77442805:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	546.427001953125	2	544.316566	1086.61858	-0.70521	-0.00038386	-0.80781	-0.0004397	-1.513	-0.00082356	544.3158021630351	90.516	0.9635	91.251	90.904	91.868	0.7345					50	18	5	0	0	0	0.63811	1	34369	34369		12.532	0.89125	1	8631800			15708	3573	11398	11485	15346	15346					0.07873424605554646
FSLNICGPYH	10	Unmodified	_FSLNICGPYH_					0	0	0			REV__ENST00000471137.1_1_20:34262270-34262515:-|nuORF	REV__ENST00000471137.1_1_20:34262270-34262515:-|nuORF	MSMS	A375_MHC_IP_R2	2	575.7695922851562	2	575.771134	1149.52771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.04	1	119.62	119.12	120.12	0.58146								0	0	0	0.1524	1	45293	45293		13.042	1.4022	1		+		15709	22817	11399	11486	15347	15347					-0.04106787434238868
FSLPAQPLW	9	Unmodified	_FSLPAQPLW_					0	0	0		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	A375_MHC_IP_R1	1	530.1875610351562	2	529.78711	1057.55967	-0.64405	-0.00034121	-0.90711	-0.00048058	-1.5512	-0.00082179	529.7865925188593	129.12	0.30644	129.12	128.94	129.25	0					9	5	2	0	0	0	0.047602	1	49631	49631		65.235	18.314	1	19253000			15710	6877	11400	11487	15348	15348					0.03318948311220993
FSLPAQPLW	9	Unmodified	_FSLPAQPLW_					0	0	0		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	A375_MHC_IP_R2	2	1059.375244140625	1	1058.56694	1057.55967	0.006318	6.688E-06	0.32674	0.00034588	0.33306	0.00035257	1058.5671790770568	128.85	0.35498	129.09	128.96	129.31	0.23946					11	6	3	0	0	0	0.0092471	1	50640	50640		103.35	39.117	1	32932000			15711	6877	11400	11487	15349	15349					0.03318948311220993
FSLPLVRKF	9	Unmodified	_FSLPLVRKF_					0	0	0		nc|ENSG00000127334|Q92630-2|DYRK2;ENSG00000127334|ENST00000344096|DYRK2	nc|ENSG00000127334|Q92630-2|DYRK2	nc|ENSG00000127334|Q92630-2|DYRK2	MULTI-MSMS	A375_MHC_IP_R1	1	369.9623107910156	3	369.56221	1105.6648	0.13279	4.9075E-05	0.26592	9.8276E-05	0.39872	0.00014735	369.56229591679147	84.173	0.70872	84.173	83.837	84.545	0					25	13	3	0	0	0	0.41879	1	30836	30836		23.79	15.634	1	1754100			15712	4084	11401	11488	15350	15350					0.11619489507643266
FSLPLVRKF	9	Unmodified	_FSLPLVRKF_					0	0	0		nc|ENSG00000127334|Q92630-2|DYRK2;ENSG00000127334|ENST00000344096|DYRK2	nc|ENSG00000127334|Q92630-2|DYRK2	nc|ENSG00000127334|Q92630-2|DYRK2	MULTI-MSMS	A375_MHC_IP_R2	2	369.9623718261719	3	369.56221	1105.6648	0.31139	0.00011508	-0.1456	-5.3809E-05	0.16579	6.1269E-05	369.5621374740819	83.139	0.76137	83.878	83.544	84.305	0.73962					27	14	3	0	0	0	0.41879	1	31626	31626		23.79	16.181	1	2301700			15713	4084	11401	11488	15351	15351					0.11619489507643266
FSMKFVRQI	9	Unmodified	_FSMKFVRQI_					0	0	0			REV__LRRK1|p.I1366Nfs*21|1|0.31|ENSG00000154237|chr15:101054981-101054982|-/A|frameshift_variant	REV__LRRK1|p.I1366Nfs*21|1|0.31|ENSG00000154237|chr15:101054981-101054982|-/A|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	385.2585754394531	3	385.882955	1154.62703	0.062392	2.4076E-05	2.6882	0.0010373	2.7506	0.0010614	386.2179296640173	19.267	0.29092	19.267	19.23	19.521	0					8	6	2	0	0	0	0.55359	1	4835	4835		15.248	5.0979	1	28307000	+		15714	19871	11402	11489	15352	15352					0.05590655250534837
FSMLRKLPK	9	Unmodified	_FSMLRKLPK_					0	0	0		nc|ENSG00000205583|P0CL83|STAG3L1;ENST00000414292.5_1_7:99936468-99936516:+|nuORF;ENST00000470714.5_1_7:99936468-99949880:+|nuORF;ENST00000473757.5_1_7:99936468-99948908:+|nuORF;nc|ENSG00000174353|P0CL85-2|STAG3L3;ENST00000470380.1_7:74300248-74303847:-|nuORF;nc|ENSG00000277072|P0CL84|STAG3L2;nc|ENSG00000174353|P0CL85|STAG3L3	nc|ENSG00000205583|P0CL83|STAG3L1	nc|ENSG00000205583|P0CL83|STAG3L1	MULTI-MSMS	A375_MHC_IP_R2	2	373.9147033691406	3	373.895083	1118.66342	0.09428	3.5251E-05	-1.4704	-0.00054977	-1.3761	-0.00051452	373.89448655411866	24.219	0.2026	24.863	24.755	24.958	0.64368					5	3	2	0	0	0	0.74768	1	7877	7877		2.7352	0	1	509130			15715	14866	11403	11490	15353	15353					0.10883532147249753
FSMYKPITY	9	Unmodified	_FSMYKPITY_					0	0	0		ENSG00000134779|ENST00000334295|TPGS2;nc|ENSG00000134779|Q68CL5-1|TPGS2;nc|ENSG00000134779|Q68CL5-4|TPGS2	ENSG00000134779|ENST00000334295|TPGS2	ENSG00000134779|ENST00000334295|TPGS2	MULTI-SECPEP	A375_MHC_IP_R2	2	575.72900390625	2	575.286085	1148.55762	-0.23227	-0.00013362	0.77222	0.00044425	0.53995	0.00031063	575.2860234801963	75.304	0.55833	76.044	75.724	76.282	0.7401					13	10	2	0	0	0	0.30133	1	28576	28576		43.982	24.62	1	1516400			15716	4608	11404	11491	15354	15354					-0.010718484888911917
FSNDALKTY	9	Unmodified	_FSNDALKTY_					0	0	0		ENST00000522309.1_1_X:134185341-134186138:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	529.727294921875	2	529.761289	1057.50803	-0.36738	-0.00019462	0.34192	0.00018113	-0.025461	-1.3488E-05	529.761384131819	43.211	0.66118	43.211	42.891	43.553	0					32	12	3	0	0	0	0.13728	1	14997	14997		43.982	14.9	1	17167000			15717	13023	11405	11492	15355	15355					-0.01842840173321747
FSNELDLGIED	11	Unmodified	_FSNELDLGIED_					0	0	0			REV__SLFN12|p.G74E|1|0.39|ENSG00000172123|chr17:35422808-35422808|C/T|missense_variant	REV__SLFN12|p.G74E|1|0.39|ENSG00000172123|chr17:35422808-35422808|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	627.18994140625	2	626.290608	1250.56666	-0.45862	-0.00028723	1.4087	0.00088226	0.95009	0.00059503	626.7906957358147	70.855	3.0531	70.855	68.209	71.262	0					87	59	3	0	0	0	0.56199	1	25707	25707		26.268	2.4784	1	6946900	+		15718	28010	11406	11493	15356	15356					-0.048598283894989436
FSNKLLIELT	10	Unmodified	_FSNKLLIELT_					0	0	0			REV__KLRD1|p.G28E|1|0.22|ENSG00000134539|chr12:10309463-10309463|G/A|missense_variant	REV__KLRD1|p.G28E|1|0.22|ENSG00000134539|chr12:10309463-10309463|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	393.6137390136719	3	393.232418	1176.67542	-0.69728	-0.00027419	-0.53914	-0.00021201	-1.2364	-0.0004862	393.2322059896037	33.806	0.50507	34.558	34.298	34.803	0.75225					19	9	3	0	0	0	0.69833	1	12107	12107		7.9454	1.711	1	2722200	+		15719	26864	11407	11494	15357	15357					0.09415427371436635
FSNLNTIDY	9	Unmodified	_FSNLNTIDY_					0	0	0			REV__nc|ENSG00000154917|Q9NRW1-2|RAB6B	REV__nc|ENSG00000154917|Q9NRW1-2|RAB6B	MULTI-MSMS	A375_MHC_IP_R1	1	544.158203125	2	543.758746	1085.50294	-0.64518	-0.00035082	-0.69361	-0.00037716	-1.3388	-0.00072798	543.7585154818321	58.551	0.60884	58.551	58.177	58.786	0					22	11	3	0	0	0	0.22013	2	21040	20996;21040		36.506	0	1	3820500	+		15720	19905	11408	11495	15358;15359	15359					-0.03639144035946629
FSNLNTIDY	9	Unmodified	_FSNLNTIDY_					0	0	0			REV__nc|ENSG00000154917|Q9NRW1-2|RAB6B	REV__nc|ENSG00000154917|Q9NRW1-2|RAB6B	MULTI-SECPEP	A375_MHC_IP_R2	2	544.15771484375	2	543.758746	1085.50294	-1.0944	-0.00059511	-0.89725	-0.00048789	-1.9917	-0.001083	543.7582024440756	57.787	0.60583	58.536	58.323	58.929	0.74894					18	11	2	0	0	0	0.16764	1	21868	21868		29.841	0	1	2873700	+		15721	19905	11408	11495	15360	15360					-0.03639144035946629
FSNSDLDHIY	10	Unmodified	_FSNSDLDHIY_					0	0	0			REV__nc|ENSG00000140992|O15530-2|PDPK1	REV__nc|ENSG00000140992|O15530-2|PDPK1	MULTI-MSMS	A375_MHC_IP_R1	1	606.1720581054688	2	605.772385	1209.53022	0.028491	1.7259E-05	-0.94613	-0.00057314	-0.91764	-0.00055588	605.7717833909968	38.832	0.25352	38.832	38.679	38.933	0					7	4	2	0	0	0	0.66308	1	13239	13239		16.149	2.2431	1	2476100	+		15722	19238	11409	11496	15361	15361					-0.06616660495569704
FSNSEDESCV	10	Unmodified	_FSNSEDESCV_					0	0	0		MST1R|p.D1042N|1|0.14|ENSG00000164078|chr3:49895314-49895314|C/T|missense_variant	MST1R|p.D1042N|1|0.14|ENSG00000164078|chr3:49895314-49895314|C/T|missense_variant	MST1R|p.D1042N|1|0.14|ENSG00000164078|chr3:49895314-49895314|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	559.1386108398438	2	558.711136	1115.40772	-0.41558	-0.00023219	-1.1986	-0.00066967	-1.6142	-0.00090186	558.7092596099574	71.002	0.20679	71.002	70.85	71.057	0					5	3	2	0	0	0	0.92957	1	25748	25748		3.2813	0	1	284980			15723	14411	11410	11497	15362	15362					-0.14536865289301204
FSPEDPQAQAA	11	Unmodified	_FSPEDPQAQAA_					0	0	0		nc|ENSG00000181577|Q8N319-4|LINC03040	nc|ENSG00000181577|Q8N319-4|LINC03040	nc|ENSG00000181577|Q8N319-4|LINC03040	MULTI-SECPEP	A375_MHC_IP_R1	1	581.1646118164062	2	580.76456	1159.51457	-0.53118	-0.00030849	0.67161	0.00039005	0.14042	8.1553E-05	580.7650704377896	26.516	0.6066	26.516	26.271	26.878	0					19	11	2	0	0	0	0.82939	1	7946	7946		18.373	3.9677	1	2212900			15724	14797	11411	11498	15363	15363					-0.058809470126107044
FSPEEDAVFY	10	Unmodified	_FSPEEDAVFY_					0	0	0		ENSG00000249715|ENST00000624922|FER1L5;nc|ENSG00000249715|A0AVI2-4|FER1L5;nc|ENSG00000249715|A0AVI2-2|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	MSMS	A375_MHC_IP_R2	2	602.1749877929688	2	602.263862	1202.51317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.738	1	70.473	69.973	70.973	0.73421								0	0	0	0.14925	1	26432	26432		19.257	1.122	1				15725	9841	11412	11499	15364	15364					-0.07998581101378477
FSPLNPVRVH	10	Unmodified	_FSPLNPVRVH_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	A375_MHC_IP_R1	1	389.24993896484375	3	389.220735	1164.64038	0.32106	0.00012496	-1.1779	-0.00045847	-0.85686	-0.00033351	389.22022560107246	37.258	0.40912	37.258	37.096	37.505	0					9	7	2	0	0	0	0.70682	1	12566	12566		9.2438	3.0519	1	968910			15726	7374;7439	11413	11500	15365	15365					0.0646422935415103
FSPLNPVRVH	10	Unmodified	_FSPLNPVRVH_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MATCH	A375_MHC_IP_R2	2		3	389.220735	1164.64038	-0.29064	-0.00011312	-0.45465	-0.00017696	-0.74529	-0.00029008	389.55518130952584	36.242	0.3061	37.013	36.901	37.207	0.7709	-0.12288	0.00065628	NaN	9.2438	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2482400			15727	7374;7439	11413	11500							0.0646422935415103
FSPLPKWT	8	Unmodified	_FSPLPKWT_					0	0	0		ENST00000336838.10_1_2:55646247-55646439:-|nuORF	ENST00000336838.10_1_2:55646247-55646439:-|nuORF	ENST00000336838.10_1_2:55646247-55646439:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	488.666259765625	2	488.268553	974.522553	-0.68691	-0.00033539	-0.29006	-0.00014163	-0.97696	-0.00047702	488.26876994347606	50.872	1.673	51.626	51.006	52.679	0.75406					65	32	3	0	0	0	0.90775	1	19005	19005		26.884	26.884	1	27798000			15728	10822	11414	11501	15366	15366					0.03427276765478382
FSPNYPKID	9	Unmodified	_FSPNYPKID_					0	0	0		ENST00000368126.2_1_6:131179278-131186801:-|nuORF	ENST00000368126.2_1_6:131179278-131186801:-|nuORF	ENST00000368126.2_1_6:131179278-131186801:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	542.2322387695312	2	540.771657	1079.52876	-0.10312	-5.5766E-05	-0.1678	-9.074E-05	-0.27092	-0.00014651	540.7716628555401	69.418	0.76245	69.418	68.969	69.732	0					35	14	4	0	0	0	0.38603	1	25206	25206		25.399	8.457	1	4517200			15729	11107	11415	11502	15367	15367					-0.007822497936786021
FSPWFMWL	8	Unmodified	_FSPWFMWL_					0	0	0			REV__ENSG00000187010|ENST00000328664|RHD	REV__ENSG00000187010|ENST00000328664|RHD	MULTI-SECPEP	A375_MHC_IP_R2	2	557.6638793945312	2	557.264956	1112.51536	-0.84381	-0.00047023	-0.70643	-0.00039367	-1.5502	-0.0008639	557.2642813428116	66.835	0.35684	67.571	67.342	67.698	0.73631					11	6	2	0	0	0	0.93416	1	25352	25352		20.871	20.871	1	1865200	+		15730	22003	11416	11503	15368	15368					-0.03639779106606511
FSPWFMWL	8	Unmodified	_FSPWFMWL_					0	0	0			REV__ENSG00000187010|ENST00000328664|RHD	REV__ENSG00000187010|ENST00000328664|RHD	MULTI-MATCH	A375_MHC_IP_R1	1		2	557.264956	1112.51536	-0.87859	-0.00048961	-0.47043	-0.00026215	-1.349	-0.00075176	557.2645570573495	67.489	0.4594	67.489	67.245	67.704	0	-0.041073	0.00014994	NaN	20.871	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1291700	+		15731	22003	11416	11503							-0.03639779106606511
FSQEPGLQPF	10	Unmodified	_FSQEPGLQPF_					0	0	0		ENSG00000188269|ENST00000322301|OR7A5	ENSG00000188269|ENST00000322301|OR7A5	ENSG00000188269|ENST00000322301|OR7A5	MULTI-SECPEP	A375_MHC_IP_R2	2	574.6978759765625	2	575.282389	1148.55022	-0.27745	-0.00015961	-0.010483	-6.0307E-06	-0.28794	-0.00016564	575.2822252314876	81.561	0.90998	82.304	81.877	82.787	0.74293					27	17	2	0	0	0	0.8125	1	30819	30819		18.146	2.2992	1	14974000			15732	8896	11417	11504	15369	15369					-0.018108647649796694
FSQLQIKLL	9	Unmodified	_FSQLQIKLL_					0	0	0			REV__ENST00000455503.1_1_1:151319554-151319629:+|nuORF	REV__ENST00000455503.1_1_1:151319554-151319629:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	364.2937927246094	3	363.893737	1088.65938	0.031837	1.1585E-05	-0.86771	-0.00031575	-0.83587	-0.00030417	363.8934924721113	64.289	0.56054	65.029	64.699	65.259	0.74022					22	10	3	0	0	0	0.75519	1	24387	24387		10.151	3.5202	1	2396700	+		15733	24928	11418	11505	15370	15370					0.11859765925169086
FSQNIGRQV	9	Unmodified	_FSQNIGRQV_					0	0	0		ENSG00000101189|ENST00000370487|MRGBP	ENSG00000101189|ENST00000370487|MRGBP	ENSG00000101189|ENST00000370487|MRGBP	MULTI-MSMS	A375_MHC_IP_R1	1	525.179931640625	2	524.780348	1047.54614	-0.73618	-0.00038633	0.20528	0.00010773	-0.5309	-0.00027861	524.7803625540352	32.61	0.35179	32.61	32.434	32.785	0					11	6	2	0	0	0	0.0095341	1	10575	10575		96.936	34.363	1	4135500			15734	2266	11419	11506	15371	15371					0.024270905319781377
FSQNIGRQV	9	Unmodified	_FSQNIGRQV_					0	0	0		ENSG00000101189|ENST00000370487|MRGBP	ENSG00000101189|ENST00000370487|MRGBP	ENSG00000101189|ENST00000370487|MRGBP	MULTI-SECPEP	A375_MHC_IP_R2	2	525.1800537109375	2	524.780348	1047.54614	-0.51772	-0.00027169	-0.25006	-0.00013122	-0.76778	-0.00040291	524.780353082568	31.874	0.30196	32.611	32.504	32.806	0.73691					9	5	2	0	0	0	0.016541	1	11314	11314		96.936	43.103	1	2260700			15735	2266	11419	11506	15372	15372					0.024270905319781377
FSQPKGGNGNL	11	Unmodified	_FSQPKGGNGNL_					0	0	0			REV__CNKSR2|p.R843Q|1|0.69|ENSG00000149970|chrX:21609453-21609453|G/A|missense_variant	REV__CNKSR2|p.R843Q|1|0.69|ENSG00000149970|chrX:21609453-21609453|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	373.2780456542969	3	373.524484	1117.55162	0.37859	0.00014141	3.6705	0.001371	4.0491	0.0015124	373.8594238155667	30.416	0.30357	31.135	31.013	31.317	0.71857					6	5	2	0	0	0	0.90673	1	10734	10734		11.065	0	1	908900	+		15736	15809	11420	11507	15373	15373					-0.0024523067620521033
FSQVHKHPV	9	Unmodified	_FSQVHKHPV_					0	0	0			REV__MGAM|p.E200K|1|0.54|ENSG00000257335|chr7:142021625-142021625|G/A|missense_variant	REV__MGAM|p.E200K|1|0.54|ENSG00000257335|chr7:142021625-142021625|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	540.1939697265625	2	539.793258	1077.57196	-0.53496	-0.00028877	1.9092	0.0010306	1.3742	0.0007418	539.7942518909794	88.702	1.0178	88.702	88.052	89.069	0					24	19	2	0	0	0	0.60012	1	32591	32591		12.532	0	1	3023300	+		15737	27013	11421	11508	15374	15374					0.03627984774266224
FSQYFYEAP	9	Unmodified	_FSQYFYEAP_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-MSMS	A375_MHC_IP_R1	1	576.3717651367188	2	576.25584	1150.49713	-0.17721	-0.00010212	0.85739	0.00049408	0.68018	0.00039196	576.7585932910966	73.69	0.55657	73.69	73.539	74.095	0					14	10	2	0	0	0	0.69674	1	26801	26801		7.2892	0.56607	1	1454500			15738	1441	11422	11509	15375	15375					-0.0721024254760323
FSRAPAAISY	10	Unmodified	_FSRAPAAISY_					0	0	0			REV__nc|ENSG00000100997|Q8N2K0-3|ABHD12	REV__nc|ENSG00000100997|Q8N2K0-3|ABHD12	MULTI-MSMS	A375_MHC_IP_R2	2	542.7677612304688	2	541.785099	1081.55564	-0.7203	-0.00039025	0.36652	0.00019858	-0.35378	-0.00019167	541.7848130222856	68.346	0.60904	69.081	68.714	69.323	0.73511					22	11	3	0	0	0	0.6806	1	25842	25842		14.838	0.25658	1	2013000	+		15739	17137	11423	11510	15376	15376					0.01812858817538654
FSRFEMKF	8	Unmodified	_FSRFEMKF_					0	0	0			REV__ENST00000515088.5_1_4:169391961-169393850:-|nuORF	REV__ENST00000515088.5_1_4:169391961-169393850:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6445922851562	2	546.27077	1090.52699	-0.59425	-0.00032462	1.6838	0.00091982	1.0896	0.0005952	546.2718560108912	34.339	0.60661	34.339	34.001	34.608	0					25	11	3	0	0	0	0.91495	1	11351	11351		7.9102	0	1	3877100	+		15740	25656	11424	11511	15377	15377					-0.014655820832786048
FSRFPRSVL	9	Unmodified	_FSRFPRSVL_					0	0	0			REV__ARAP2|p.S279F|1|0.19|ENSG00000047365|chr4:36228651-36228651|G/A|missense_variant	REV__ARAP2|p.S279F|1|0.19|ENSG00000047365|chr4:36228651-36228651|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	370.9334716796875	3	370.213581	1107.61891	0.30166	0.00011168	0.69582	0.0002576	0.99749	0.00036928	370.213428229197	46.32	0.45188	46.32	46.043	46.495	0					18	8	3	0	0	0	0.80713	1	16137	16137		2.086	0	1	3515000	+		15741	15431	11425	11512	15378	15378					0.06940844325413309
FSRLFDRWRWQ	11	Unmodified	_FSRLFDRWRWQ_					0	0	0			REV__ENST00000261441.9_2_1:114340169-114340280:-|nuORF	REV__ENST00000261441.9_2_1:114340169-114340280:-|nuORF	MSMS	A375_MHC_IP_R1	1	798.9092407226562	2	798.912759	1595.81096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.729	1	79.729	79.229	80.229	0								0	0	0	0.16341	1	29105	29105		0.96228	0.65524	1		+		15742	23187	11426	11513	15379	15379					0.03689140005576519
FSRPERPANRR	11	Unmodified	_FSRPERPANRR_					0	0	0		ENSG00000168502|ENST00000695636|MTCL1;nc|ENSG00000168502|Q9Y4B5-4|MTCL1;ENST00000581670.1_1_18:8831598-8831835:+|nuORF	ENSG00000168502|ENST00000695636|MTCL1	ENSG00000168502|ENST00000695636|MTCL1	MSMS	A375_MHC_IP_R2	2	462.65264892578125	3	462.588481	1384.74361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.832	1	37.603	37.103	38.103	0.7709								0	0	0	0.16249	1	13448	13448		4.7159	0.59929	1				15743	7312	11427	11514	15380	15380					0.06663109794635602
FSRQSDVW	8	Unmodified	_FSRQSDVW_					0	0	0		nc|ENSG00000105639|P52333-2|JAK3;ENSG00000105639|ENST00000458235|JAK3	nc|ENSG00000105639|P52333-2|JAK3	nc|ENSG00000105639|P52333-2|JAK3	MULTI-MSMS	A375_MHC_IP_R2	2	512.6708984375	2	512.745973	1023.47739	-1.0275	-0.00052684	-0.17107	-8.7717E-05	-1.1986	-0.00061456	512.745840875522	58.054	0.60778	58.803	58.528	59.135	0.74894					31	11	4	0	0	0	0.73946	1	22051	22051		23.148	5.0021	1	11172000			15744	2618	11428	11515	15381	15381					-0.03340573767718524
FSRRQLFL	8	Unmodified	_FSRRQLFL_					0	0	0		ENSG00000183155|ENST00000367262|RABIF	ENSG00000183155|ENST00000367262|RABIF	ENSG00000183155|ENST00000367262|RABIF	MULTI-SECPEP	A375_MHC_IP_R2	2	534.2178344726562	2	533.811451	1065.60835	-1.0865	-0.00057999	-0.83604	-0.00044629	-1.9225	-0.0010263	533.8111927700852	58.511	0.40815	59.26	59.032	59.44	0.74894					12	7	2	0	0	0	0.8957	1	22062	22062		28.487	5.7506	1	1161300			15745	8471	11429	11516	15382	15382					0.07816861670971775
FSRTTSTW	8	Unmodified	_FSRTTSTW_					0	0	0			REV__ENST00000446421.2_1_9:104817825-104817921:-|nuORF	REV__ENST00000446421.2_1_9:104817825-104817921:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	493.65069580078125	2	493.240524	984.466495	-0.37909	-0.00018698	0.15894	7.8397E-05	-0.22015	-0.00010858	493.24051154493907	31.947	0.41019	31.947	31.769	32.179	0					13	7	2	0	0	0	0.74466	1	10209	10209		21.747	0.87544	1	3853800	+		15746	24853	11430	11517	15383	15383					-0.026359761420053474
FSRTTSTW	8	Unmodified	_FSRTTSTW_					0	0	0			REV__ENST00000446421.2_1_9:104817825-104817921:-|nuORF	REV__ENST00000446421.2_1_9:104817825-104817921:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	493.64141845703125	2	493.240524	984.466495	-0.33217	-0.00016384	1.4684	0.00072426	1.1362	0.00056042	493.24113654712323	110.96	0.55886	111.7	111.4	111.96	0.73692					17	10	2	0	0	0	0.93661	1	41829	41829		15.847	0	1	1720300	+		15747	24853	11430	11517	15384	15384					-0.026359761420053474
FSRYWRRWNRF	11	Unmodified	_FSRYWRRWNRF_					0	0	0		nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;CACNA1C|p.P1597Qfs*32|1|0.14|ENSG00000151067|chr12:2668954-2668961|CCTCTGAA/-|frameshift_variant	nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	MULTI-SECPEP	A375_MHC_IP_R2	2	559.1825561523438	3	558.623525	1672.84875	-0.60517	-0.00033806	1.3551	0.00075698	0.74992	0.00041892	558.9580926005382	134.41	0.66136	134.55	134.29	134.95	0.13901					14	12	2	0	0	0	1.0015	1	52967	52967		0	0	1	2418400			15748	5876	11431	11518	15385	15385					0.03923650991055183
FSSDEPHASTV	11	Unmodified	_FSSDEPHASTV_					0	0	0			REV__nc|ENSG00000211747|A0A075B6N2|TRBV20-1	REV__nc|ENSG00000211747|A0A075B6N2|TRBV20-1	MULTI-MSMS	A375_MHC_IP_R2	2	589.1614379882812	2	588.762017	1175.50948	-0.91601	-0.00053931	-0.71958	-0.00042366	-1.6356	-0.00096297	589.2628424008321	24.631	0.60872	25.274	24.907	25.516	0.64368					19	11	2	0	0	0	0.73016	1	8096	8096		8.7454	2.0222	1	5047500	+		15749	27471	11432	11519	15386	15386					-0.07125250875242273
FSSDNRQIV	9	Unmodified	_FSSDNRQIV_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF;ENST00000502890.5_1_5:180667315-180668686:-|nuORF;ENST00000507261.1_1_5:180668485-180669312:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-SECPEP	A375_MHC_IP_R1	1	533.6693115234375	2	533.269813	1064.52507	-0.62556	-0.00033359	-0.34571	-0.00018436	-0.97127	-0.00051795	533.2696579751363	33.971	0.506	33.971	33.648	34.154	0					21	9	3	0	0	0	0.018833	1	11112	11112		76.825	18.146	1	16904000			15750	9470	11433	11520	15387	15387					-0.004609195675357114
FSSDNRQIV	9	Unmodified	_FSSDNRQIV_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF;ENST00000502890.5_1_5:180667315-180668686:-|nuORF;ENST00000507261.1_1_5:180668485-180669312:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-SECPEP	A375_MHC_IP_R2	2	533.66943359375	2	533.269813	1064.52507	-0.97523	-0.00052006	0.066257	3.5333E-05	-0.90897	-0.00048473	533.2696951901426	33.232	0.45863	33.984	33.737	34.196	0.75225					26	8	4	0	0	0	0.04566	1	11868	11868		86.332	27.653	1	14180000			15751	9470	11433	11520	15388	15388					-0.004609195675357114
FSSDRTITEY	10	Unmodified	_FSSDRTITEY_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;ENST00000471359.1_1_20:25274602-25277155:+|nuORF	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	A375_MHC_IP_R2	2	610.1851196289062	2	609.785492	1217.55643	-0.50398	-0.00030732	0.11284	6.8805E-05	-0.39115	-0.00023851	609.7855922357064	41.704	0.45938	42.479	42.3	42.759	0.77451					13	8	2	0	0	0	0.22444	1	15503	15503		69.338	38.07	1	3017200			15752	2241	11434	11521	15389	15389					-0.04364391324088501
FSSESSVYR	9	Unmodified	_FSSESSVYR_					0	0	0			REV__tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1	REV__tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	532.2003784179688	2	531.248546	1060.48254	-0.57364	-0.00030474	-0.1133	-6.0191E-05	-0.68694	-0.00036493	531.2484047510894	25.229	0.5601	25.229	25.053	25.613	0					26	10	3	0	0	0	0.41409	1	7310	7310		24.021	0	1	35035000	+		15753	28211	11435	11522	15390	15390					-0.045283146957672216
FSSFSGCVGY	10	Unmodified	_FSSFSGCVGY_					0	0	0			REV__nc|ENSG00000106410|O60393-2|NOBOX	REV__nc|ENSG00000106410|O60393-2|NOBOX	MULTI-MSMS	A375_MHC_IP_R2	2	527.6727905273438	2	527.220943	1052.42733	-0.78889	-0.00041592	-1.5856	-0.00083598	-2.3745	-0.0012519	527.2199197411022	71.655	0.40498	72.389	72.162	72.567	0.73421					11	7	2	0	0	0	0.70651	1	27168	27168		9.3831	0.78985	1	1234500	+		15754	17448	11436	11523	15391	15391					-0.09678444487872184
FSSGRIKL	8	Unmodified	_FSSGRIKL_					0	0	0			REV__ENST00000428879.5_1_2:150436081-150438721:-|nuORF	REV__ENST00000428879.5_1_2:150436081-150438721:-|nuORF	MSMS	A375_MHC_IP_R1	1	454.3094482421875	2	454.271627	906.528701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.856	1	28.856	28.356	29.356	0								0	0	0	0.16876	1	8954	8954		20.454	0	1		+		15755	24682	11437	11524	15392	15392					0.07169794996980272
FSSHIERP	8	Unmodified	_FSSHIERP_					0	0	0		CCDC141|p.F1287I|1|0.19|ENSG00000163492|chr2:178837360-178837360|A/T|missense_variant	CCDC141|p.F1287I|1|0.19|ENSG00000163492|chr2:178837360-178837360|A/T|missense_variant	CCDC141|p.F1287I|1|0.19|ENSG00000163492|chr2:178837360-178837360|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	971.8875122070312	1	972.489756	971.482479	0.083597	8.1297E-05	1.9359	0.0018826	2.0195	0.0019639	972.4902536059718	117.28	0.50491	117.94	117.68	118.19	0.65961					12	9	2	0	0	0	0.92636	1	44289	44289		16.942	14.883	1	8077600			15756	306	11438	11525	15393	15393					-0.004402699050956471
FSSIAPRTY	9	Unmodified	_FSSIAPRTY_					0	0	0			REV__nc|ENSG00000124789|P49790-2|NUP153	REV__nc|ENSG00000124789|P49790-2|NUP153	MULTI-SECPEP	A375_MHC_IP_R2	2	521.6713256835938	2	521.271824	1040.5291	-0.48532	-0.00025299	-0.69324	-0.00036137	-1.1786	-0.00061435	521.271348273953	84.992	0.61257	85.728	85.372	85.984	0.73601					20	11	2	0	0	0	0.53748	1	32304	32304		13.042	6.8367	1	2392900	+		15757	18325	11439	11526	15394	15394					0.010451699261921021
FSSIEREEY	9	Unmodified	_FSSIEREEY_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	A375_MHC_IP_R2	2	580.6665649414062	2	580.266936	1158.51932	-0.4779	-0.00027731	0.037087	2.1521E-05	-0.44081	-0.00025579	580.2670227013489	37.83	0.4605	38.604	38.279	38.739	0.77451					19	8	3	0	0	0	0.04699	1	13826	13826		65.474	3.8718	1	4106100			15758	5785	11440	11527	15395	15395					-0.053600628698632136
FSSIREEEY	9	Unmodified	_FSSIREEEY_					0	0	0		nc|ENSG00000166016|Q8N961-2|ABTB2;ENSG00000166016|ENST00000435224|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	MULTI-MSMS	A375_MHC_IP_R1	1	580.6674194335938	2	580.266936	1158.51932	-0.32172	-0.00018668	0.17073	9.9071E-05	-0.15098	-8.761E-05	580.2670815017224	38.48	0.66388	38.48	38.218	38.882	0					23	12	3	0	0	0	0.035419	1	13064	13064		70.332	0	1	3104400			15759	7017	11441	11528	15396	15396					-0.053600628698632136
FSSLEWISSDQ	11	Unmodified	_FSSLEWISSDQ_					0	0	0			REV__ENSG00000148110|ENST00000375344|MFSD14B	REV__ENSG00000148110|ENST00000375344|MFSD14B	MSMS	A375_MHC_IP_R1	1	649.7637939453125	2	649.7986	1297.58265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.406	1	97.406	96.906	97.906	0								0	0	0	0.16164	1	35787	35787		10.151	0.076642	1		+		15760	19614	11442	11529	15397	15397					-0.05424122152612654
FSSQLRPPCP	10	Unmodified	_FSSQLRPPCP_					0	0	0			REV__ENST00000440629.1_1_21:38593773-38609741:+|nuORF	REV__ENST00000440629.1_1_21:38593773-38609741:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	378.6017150878906	3	377.858698	1130.55426	0.28125	0.00010627	-0.80851	-0.0003055	-0.52726	-0.00019923	377.8583631932378	89.805	0.45512	89.805	89.526	89.981	0					13	8	2	0	0	0	0.91556	1	33062	33062		12.873	5.3955	1	1070300	+		15761	24797	11443	11530	15398	15398					-0.0057909854290301155
FSSSHEGFSY	10	Unmodified	_FSSSHEGFSY_					0	0	0		ENSG00000244405|ENST00000306376|ETV5;nc|ENSG00000244405|P41161-2|ETV5	ENSG00000244405|ENST00000306376|ETV5	ENSG00000244405|ENST00000306376|ETV5	MULTI-MSMS	A375_MHC_IP_R1	1	574.6378173828125	2	574.238178	1146.4618	-0.085928	-4.9343E-05	-0.094505	-5.4268E-05	-0.18043	-0.00010361	574.2380560050816	43.425	0.76438	43.425	43.043	43.808	0					29	14	3	0	0	0	0.0075909	1	15059	15059		131.27	56.339	1	7766200			15762	9820	11444	11531	15399	15399					-0.10556905075418399
FSSSHEGFSY	10	Unmodified	_FSSSHEGFSY_					0	0	0		ENSG00000244405|ENST00000306376|ETV5;nc|ENSG00000244405|P41161-2|ETV5	ENSG00000244405|ENST00000306376|ETV5	ENSG00000244405|ENST00000306376|ETV5	MULTI-MSMS	A375_MHC_IP_R2	2	575.1401977539062	2	574.238178	1146.4618	-0.15204	-8.731E-05	-0.45438	-0.00026092	-0.60643	-0.00034823	574.237807211633	42.674	0.81285	43.446	42.962	43.775	0.7724					30	15	3	0	0	0	0.69306	2	15836	15836;15907		13.906	4.5229	1	7230200			15763	9820	11444	11531	15400;15401	15400					-0.10556905075418399
FSSSHNINLY	10	Unmodified	_FSSSHNINLY_					0	0	0		INSL6|p.V139L|1|0.21|ENSG00000120210|chr9:5164140-5164140|C/G|missense_variant	INSL6|p.V139L|1|0.21|ENSG00000120210|chr9:5164140-5164140|C/G|missense_variant	INSL6|p.V139L|1|0.21|ENSG00000120210|chr9:5164140-5164140|C/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	393.9489440917969	3	394.524372	1180.55129	-0.0040014	-1.5786E-06	0.17874	7.0519E-05	0.17474	6.894E-05	394.5242649724671	52.346	0.25295	52.346	52.237	52.49	0					6	4	2	0	0	0	0.93615	1	18614	18614		3.8763	1.7924	1	717430			15764	14167	11445	11532	15402	15402					-0.03176650396039804
FSSSVKRKW	9	Unmodified	_FSSSVKRKW_					0	0	0			REV__ASXL2|p.S139F|1|0.23|ENSG00000143970|chr2:25771528-25771528|G/A|missense_variant	REV__ASXL2|p.S139F|1|0.23|ENSG00000143970|chr2:25771528-25771528|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	563.2132568359375	2	562.81419	1123.61383	-0.46094	-0.00025942	-0.49053	-0.00027608	-0.95147	-0.0005355	562.8137566751495	79.854	0.61428	79.854	79.522	80.136	0					31	11	4	0	0	0	0.4261	1	29116	29116		37.974	10.345	1	8700900	+		15765	15469	11446	11533	15403	15403					0.056965404627817406
FSSVFGLWPP	10	Unmodified	_FSSVFGLWPP_					0	0	0			REV__nc|ENSG00000112425|B3EWF7|EPM2A	REV__nc|ENSG00000112425|B3EWF7|EPM2A	MULTI-MSMS	A375_MHC_IP_R2	2	568.6895751953125	2	568.792392	1135.57023	-0.23798	-0.00013536	-0.57203	-0.00032537	-0.81001	-0.00046073	568.7924603297097	109.55	0.60744	110.3	109.98	110.59	0.74684					17	11	2	0	0	0	0.6806	1	41279	41279		14.838	1.3304	1	1826000	+		15766	27176	11447	11534	15404	15404					0.007869309656598489
FSSVPSLEQQ	10	Unmodified	_FSSVPSLEQQ_					0	0	0			REV__ENSG00000115850|ENST00000264162|LCT	REV__ENSG00000115850|ENST00000264162|LCT	MULTI-SECPEP	A375_MHC_IP_R2	2	375.1180114746094	3	374.520628	1120.54005	0.29025	0.0001087	3.88	0.0014532	4.1703	0.0015619	374.52124025133725	39.838	0.15171	40.613	40.524	40.676	0.77451					6	2	3	0	0	0	0.91442	1	14746	14746		7.0371	0	1	832140	+		15767	17919	11448	11535	15405	15405					-0.015394724901852896
FSTDRIDF	8	Unmodified	_FSTDRIDF_					0	0	0		nc|ENSG00000141298|Q76I76|SSH2;ENSG00000141298|ENST00000540801|SSH2	nc|ENSG00000141298|Q76I76|SSH2	nc|ENSG00000141298|Q76I76|SSH2	MULTI-MSMS	A375_MHC_IP_R1	1	500.67193603515625	2	500.740357	999.46616	-0.20283	-0.00010156	-0.34028	-0.00017039	-0.54311	-0.00027196	500.7401851442094	35.804	0.81647	35.804	35.522	36.339	0					52	15	5	0	0	0	0.7754	1	11833	11833		11.64	1.5664	1	195460000			15768	5226	11449	11536	15406	15406					-0.033593958618666875
FSTEMMMH	8	Unmodified	_FSTEMMMH_					0	0	0		ENST00000527862.1_1_17:42811411-42826726:+|nuORF	ENST00000527862.1_1_17:42811411-42826726:+|nuORF	ENST00000527862.1_1_17:42811411-42826726:+|nuORF	MSMS	A375_MHC_IP_R1	1	507.15838623046875	2	507.198099	1012.38164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.977	1	42.977	42.477	43.477	0								0	0	0	0.16876	1	14918	14918		9.3474	0.75416	1				15769	13107	11450	11537	15407	15407					-0.12405129266119275
FSTIHVAY	8	Unmodified	_FSTIHVAY_					0	0	0			REV__nc|ENSG00000196371|P22083-2|FUT4	REV__nc|ENSG00000196371|P22083-2|FUT4	MULTI-SECPEP	A375_MHC_IP_R2	2	468.6688537597656	2	469.242535	936.470518	-0.59337	-0.00027843	0.096427	4.5248E-05	-0.49694	-0.00023319	469.2422622400024	67.514	0.61092	68.251	67.9	68.511	0.73631					16	11	2	0	0	0	0.92215	1	25478	25478		10.183	0.83596	1	1609100	+		15770	22188	11451	11538	15408	15408					-0.00025886648290907033
FSTKGQEYLN	10	Unmodified	_FSTKGQEYLN_					0	0	0		tr|U7SU59|U7SU59_FUSNUtRNA(Met)cytidineacetateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tmcALPE=3SV=1	tr|U7SU59|U7SU59_FUSNUtRNA(Met)cytidineacetateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tmcALPE=3SV=1	tr|U7SU59|U7SU59_FUSNUtRNA(Met)cytidineacetateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tmcALPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	396.62774658203125	3	396.196144	1185.5666	-0.42761	-0.00016942	0.13216	5.2363E-05	-0.29545	-0.00011706	396.19605022175523	28.255	0.66042	28.934	28.553	29.214	0.67857					18	12	2	0	0	0	0.71047	1	9797	9797		4.4062	0	1	6408000			15771	29741	11452	11539	15409	15409					-0.01875783598848102
FSTLGRVL	8	Unmodified	_FSTLGRVL_					0	0	0		ENSG00000163755|ENST00000296051|HPS3;ENST00000462030.5_1_3:148847510-148847732:+|nuORF;ENST00000494327.1_1_3:148847510-148848085:+|nuORF;ENST00000486530.1_1_3:148847510-148871436:+|nuORF;nc|ENSG00000163755|Q969F9-2|HPS3	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	MSMS	A375_MHC_IP_R1	1	446.65936279296875	2	446.766178	891.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.392	1	67.392	66.892	67.892	0								0	0	0	0.16876	1	24420	24420		6.7232	1.9672	1				15772	6716	11453	11540	15410	15410					0.06770392622706822
FSTLYGRVL	9	Unmodified	_FSTLYGRVL_					0	0	0		ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	MULTI-SECPEP	A375_MHC_IP_R1	1	528.4609985351562	2	528.297842	1054.58113	-0.44383	-0.00023447	0.32812	0.00017334	-0.11571	-6.1129E-05	528.297791263382	79.342	0.36072	79.342	79.161	79.522	0					9	6	2	0	0	0	0.38578	1	28977	28977		34.402	13.948	1	1336400			15773	6038	11454	11541	15411	15411					0.05602333339948018
FSTLYGRVL	9	Unmodified	_FSTLYGRVL_					0	0	0		ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6492309570312	2	528.297842	1054.58113	-0.46807	-0.00024728	0.053726	2.8384E-05	-0.41435	-0.0002189	528.2977655657563	78.517	0.30397	79.261	79.033	79.337	0.74474					7	5	2	0	0	0	0.49205	1	29837	29837		16.149	0	1	1320400			15774	6038	11454	11541	15412	15412					0.05602333339948018
FSTSTGRVY	9	Unmodified	_FSTSTGRVY_					0	0	0		ENSG00000087095|ENST00000407008|NLK	ENSG00000087095|ENST00000407008|NLK	ENSG00000087095|ENST00000407008|NLK	MULTI-SECPEP	A375_MHC_IP_R2	2	508.69244384765625	2	509.253631	1016.49271	-0.79949	-0.00040714	0.013083	6.6626E-06	-0.78641	-0.00040048	509.2534280258504	32.702	0.71139	33.439	32.909	33.62	0.73691					24	13	3	0	0	0	0.61452	1	11638	11638		26.268	9.1552	1	11210000			15775	1857	11455	11542	15413	15413					-0.014877069705221402
FSVDQFFLE	9	Unmodified	_FSVDQFFLE_					0	0	0		DHX57|p.P726S|1|0.47|ENSG00000163214|chr2:38847062-38847062|G/A|missense_variant	DHX57|p.P726S|1|0.47|ENSG00000163214|chr2:38847062-38847062|G/A|missense_variant	DHX57|p.P726S|1|0.47|ENSG00000163214|chr2:38847062-38847062|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	566.6703491210938	2	566.27149	1130.52843	-0.47859	-0.00027101	-2.8717	-0.0016262	-3.3503	-0.0018972	566.2709737170825	66.84	1.7315	67.577	66.983	68.715	0.73631					46	33	3	0	0	0	0.054426	2	25319	25319;25324		62.573	16.552	1	3613700			15776	742	11456	11543	15414;15415	15414					-0.0316166951354262
FSVDSPRIY	9	Unmodified	_FSVDSPRIY_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MULTI-MSMS	A375_MHC_IP_R1	1	542.6769409179688	2	542.277106	1082.53966	-0.94147	-0.00051054	0.67971	0.00036859	-0.26175	-0.00014194	542.2774182002893	67.476	1.371	67.476	67.194	68.565	0					87	26	5	0	0	0	0.0028938	1	24397	24397		157.8	86.662	1	149350000			15777	7854	11457	11544	15416	15416					0.001691525806336358
FSVDSPRIY	9	Unmodified	_FSVDSPRIY_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MULTI-MSMS	A375_MHC_IP_R2	2	542.6767578125	2	542.277106	1082.53966	-0.9074	-0.00049206	0.44772	0.00024279	-0.45968	-0.00024927	542.2772578211805	66.796	2.1889	67.532	66.78	68.969	0.73631					116	42	5	0	0	0	0.0028938	1	25265	25265		157.8	68.892	1	163470000			15778	7854	11457	11544	15417	15417					0.001691525806336358
FSVDSPRIY	9	Unmodified	_FSVDSPRIY_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MULTI-SECPEP	A375_MHC_IP_R2	2	542.2322387695312	2	542.277106	1082.53966	-0.7221	-0.00039158	0.38866	0.00021076	-0.33344	-0.00018082	542.2764734291458	68.777	0.50643	69.512	69.221	69.728	0.73511					15	8	3	0	0	0	0.73008	1	25964	25964		17.113	1.2657	1	1696500			15779	7854	11457	11544	15418	15418					0.001691525806336358
FSVGRIGRRY	10	Unmodified	_FSVGRIGRRY_					0	0	0		ENST00000379982.7_1_5:95091424-95099296:+|nuORF	ENST00000379982.7_1_5:95091424-95099296:+|nuORF	ENST00000379982.7_1_5:95091424-95099296:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	404.6315002441406	3	404.231634	1209.67307	0.051768	2.0926E-05	-0.17641	-7.131E-05	-0.12464	-5.0384E-05	404.2315071120593	27.533	0.55721	28.211	27.996	28.553	0.67857					25	10	3	0	0	0	0.93999	1	9434	9434		7.4771	0.85361	1	5215700			15780	11344	11458	11545	15419	15419					0.07662436476994117
FSVHLRSTDE	10	Unmodified	_FSVHLRSTDE_					0	0	0		ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	MSMS	A375_MHC_IP_R1	1	397.5956726074219	3	397.531527	1189.57275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.559	1	23.559	23.059	24.059	0								0	0	0	0.14953	1	6491	6491		18.721	4.5031	1				15781	3555	11459	11546	15420	15420					-0.014452653673288296
FSVKIKKKY	9	Unmodified	_FSVKIKKKY_					0	0	0		tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	MSMS	A375_MHC_IP_R2	2	570.8294067382812	2	570.860609	1139.70667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.76	1	21.37	20.87	21.87	0.61029								0	0	0	0.15486	1	6488	6488		2.3027	0.24298	1				15782	29552	11460	11547	15421	15421					0.14240045196174833
FSVPSTSVGS	10	Unmodified	_FSVPSTSVGS_					0	0	0		ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	MSMS	A375_MHC_IP_R1	1	484.1737365722656	2	484.24019	966.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.616	1	38.616	38.116	39.116	0								0	0	0	0.15353	1	13118	13118		9.3831	0	1				15783	3528	11461	11548	15422	15422					-0.018748155817092993
FSVPSTSVGS	10	Unmodified	_FSVPSTSVGS_					0	0	0		ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	MSMS	A375_MHC_IP_R2	2	484.1737365722656	2	484.24019	966.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.754	1	38.529	38.029	39.029	0.77451								0	0	0	0.14925	1	13837	13837		19.257	3.4098	1				15784	3528	11461	11548	15423	15423					-0.018748155817092993
FSVRNCLRH	9	Unmodified	_FSVRNCLRH_					0	0	0		HRG|p.P204L|1|0.59|ENSG00000113905|chr3:186672839-186672839|C/T|missense_variant	HRG|p.P204L|1|0.59|ENSG00000113905|chr3:186672839-186672839|C/T|missense_variant	HRG|p.P204L|1|0.59|ENSG00000113905|chr3:186672839-186672839|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	566.6700439453125	2	566.295642	1130.57673	-0.76519	-0.00043332	-1.9708	-0.0011161	-2.736	-0.0015494	566.294587032404	67.728	0.65863	67.728	67.5	68.159	0					13	12	2	0	0	0	0.69507	1	24470	24470		19.257	2.3147	1	1628000			15785	14134	11462	11549	15424	15424					0.016665456453665684
FSVSHNIEE	9	Unmodified	_FSVSHNIEE_					0	0	0		nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;nc|ENSG00000103051|Q9H9E3-3|COG4;ENST00000564315.1_1_16:70516583-70530267:-|nuORF	nc|ENSG00000103051|Q9H9E3|COG4	nc|ENSG00000103051|Q9H9E3|COG4	MULTI-MSMS	A375_MHC_IP_R2	2	531.64794921875	2	531.248546	1060.48254	-1.0366	-0.00055071	-0.065049	-3.4557E-05	-1.1017	-0.00058527	531.2484225525179	24.745	0.81502	25.389	25.161	25.976	0.64368					29	15	3	0	0	0	0.27715	1	8159	8159		32.305	32.305	1	25746000			15786	2415	11463	11550	15425	15425					-0.045283146957672216
FSVTGRVL	8	Unmodified	_FSVTGRVL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;NOMO1|p.Q465Kfs*4|1|0.07|ENSG00000103512|chr16:14863184-14863185|-/AAGAC|frameshift_variant	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	A375_MHC_IP_R1	1	440.1580505371094	2	439.758352	877.502152	-0.13361	-5.8754E-05	-0.060327	-2.6529E-05	-0.19393	-8.5284E-05	439.75825331119165	61.509	0.50914	61.509	61.279	61.788	0					16	9	2	0	0	0	0.16582	1	22164	22164		78.149	27.294	1	6062400			15787	2432	11464	11551	15426	15426					0.058501061056517756
FSVTGRVL	8	Unmodified	_FSVTGRVL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;NOMO1|p.Q465Kfs*4|1|0.07|ENSG00000103512|chr16:14863184-14863185|-/AAGAC|frameshift_variant	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	A375_MHC_IP_R2	2	440.15814208984375	2	439.758352	877.502152	-0.61554	-0.00027069	-0.051035	-2.2443E-05	-0.66658	-0.00029313	439.7583779590784	60.594	0.5604	61.339	61.006	61.566	0.74503					24	10	3	0	0	0	0.17784	1	22938	22938		69.105	16.837	1	5887400			15788	2432	11464	11551	15427	15427					0.058501061056517756
FSWDDNGNL	9	Unmodified	_FSWDDNGNL_					0	0	0		nc|ENSG00000158402|P30307-4|CDC25C	nc|ENSG00000158402|P30307-4|CDC25C	nc|ENSG00000158402|P30307-4|CDC25C	MULTI-SECPEP	A375_MHC_IP_R1	1	1066.79296875	1	1067.44287	1066.43559	-0.10873	-0.00011607	-0.69957	-0.00074675	-0.8083	-0.00086282	1068.443804715122	131.48	2.0262	131.48	130.97	133	0					52	39	2	0	0	0	0.76187	1	50911	50911		7.2892	5.2295	1	12097000			15789	14700	11465	11552	15428	15428					-0.09497174246916984
FSWDDNGNL	9	Unmodified	_FSWDDNGNL_					0	0	0		nc|ENSG00000158402|P30307-4|CDC25C	nc|ENSG00000158402|P30307-4|CDC25C	nc|ENSG00000158402|P30307-4|CDC25C	MULTI-SECPEP	A375_MHC_IP_R2	2	1067.9107666015625	1	1067.44287	1066.43559	0.18967	0.00020246	-0.44444	-0.00047442	-0.25477	-0.00027195	1067.4435219352017	134.82	0.9649	134.96	134.6	135.56	0.13901					25	18	2	0	0	0	0.78798	1	52915	52915		3.9444	0	1	3457400			15790	14700	11465	11552	15429	15429					-0.09497174246916984
FSWFWFRLYWF	11	Unmodified	_FSWFWFRLYWF_					0	0	0		nc|ENSG00000223802|P27544-2|CERS1;ENSG00000223802|ENST00000623882|CERS1	nc|ENSG00000223802|P27544-2|CERS1	nc|ENSG00000223802|P27544-2|CERS1	MSMS	A375_MHC_IP_R1	1	842.8992919921875	2	842.908622	1683.80269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.39	1	129.39	128.89	129.89	0								0	0	0	0.1636	1	49770	49770		0	0	1				15791	9689	11466	11553	15430	15430					-0.011858069637355584
FSWHFPVFRS	10	Unmodified	_FSWHFPVFRS_					0	0	0			REV__ENST00000275605.7_1_7:56119039-56119264:-|nuORF	REV__ENST00000275605.7_1_7:56119039-56119264:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1310.2711181640625	1	1309.64765	1308.64038	0.28021	0.00036698	1.2486	0.0016352	1.5288	0.0020022	1309.6484433815713	123.33	0.20109	123.71	123.58	123.78	0.3766					5	3	2	0	0	0	0.70179	1	47378	47378		11.495	1.4208	1	19597000	+		15792	23300	11467	11554	15431	15431					-0.0015977064588241774
FSWMEAAKY	9	Unmodified	_FSWMEAAKY_					0	0	0			REV__ENST00000321248.4_1_10:134258699-134261562:+|nuORF	REV__ENST00000321248.4_1_10:134258699-134261562:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	567.1777954101562	2	566.760235	1131.50592	-0.8347	-0.00047308	1.1708	0.00066356	0.33609	0.00019048	566.7609656063585	25.373	0.30789	26.017	25.77	26.078	0.64368					7	5	2	0	0	0	0.27715	1	8436	8436		32.305	3.2239	1	1859400	+		15793	23566	11468	11555	15432	15432					-0.05457592182801818
FSYRDVNSW	9	Unmodified	_FSYRDVNSW_					0	0	0		ENSG00000185000|ENST00000528718|DGAT1;ENST00000524965.5_1_8:145540848-145542370:-|nuORF;ENST00000531896.5_1_8:145541583-145550314:-|nuORF	ENSG00000185000|ENST00000528718|DGAT1	ENSG00000185000|ENST00000528718|DGAT1	MULTI-SECPEP	A375_MHC_IP_R2	2	587.6690673828125	2	587.269813	1172.52507	-0.50582	-0.00029705	0.11921	7.001E-05	-0.38661	-0.00022704	587.2691198243315	70.16	0.35607	70.894	70.743	71.099	0.73421					12	6	3	0	0	0	0.27742	1	26616	26616		36.506	12.486	1	1607700			15794	8629	11469	11556	15433	15433					-0.05428919567521007
FSYRDVNSW	9	Unmodified	_FSYRDVNSW_					0	0	0		ENSG00000185000|ENST00000528718|DGAT1;ENST00000524965.5_1_8:145540848-145542370:-|nuORF;ENST00000531896.5_1_8:145541583-145550314:-|nuORF	ENSG00000185000|ENST00000528718|DGAT1	ENSG00000185000|ENST00000528718|DGAT1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	587.269813	1172.52507	-0.22507	-0.00013218	-1.2441	-0.00073062	-1.4692	-0.00086279	587.2693579876978	70.723	0.35616	70.723	70.494	70.85	0	-0.085478	-0.00088907	NaN	36.506	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1224400			15795	8629	11469	11556							-0.05428919567521007
FSYTGRVAV	9	Unmodified	_FSYTGRVAV_					0	0	0		ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-MSMS	A375_MHC_IP_R1	1	500.6665344238281	2	500.266542	998.51853	-0.47258	-0.00023641	0.2253	0.00011271	-0.24728	-0.00012371	500.26663455451177	52.596	0.45976	52.596	52.387	52.847	0					11	8	2	0	0	0	0.26169	1	18737	18737		33.445	8.0456	1	2112600			15796	6530	11470	11557	15434	15434					0.01921187271773306
FSYTGRVAV	9	Unmodified	_FSYTGRVAV_					0	0	0		ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-MATCH	A375_MHC_IP_R2	2		2	500.266542	998.51853	-0.87719	-0.00043883	-0.25087	-0.0001255	-1.1281	-0.00056433	500.26657701146036	51.899	0.30618	52.651	52.473	52.78	0.75225	0.027626	-0.00034866	NaN	33.445	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1933400			15797	6530	11470	11557							0.01921187271773306
FTADFVRQL	9	Unmodified	_FTADFVRQL_					0	0	0		ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1	ENSG00000157106|ENST00000446231|SMG1	ENSG00000157106|ENST00000446231|SMG1	MULTI-SECPEP	A375_MHC_IP_R1	1	549.1923828125	2	548.792924	1095.57129	-0.74521	-0.00040897	0.17948	9.8495E-05	-0.56574	-0.00031047	548.7928539974686	85.591	0.50752	85.591	85.311	85.819	0					17	9	2	0	0	0	0.010978	1	31341	31341		142.08	96.059	1	4041600			15798	6228	11471	11558	15435	15435					0.027331453345595946
FTADFVRQL	9	Unmodified	_FTADFVRQL_					0	0	0		ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1	ENSG00000157106|ENST00000446231|SMG1	ENSG00000157106|ENST00000446231|SMG1	MULTI-SECPEP	A375_MHC_IP_R2	2	549.1925048828125	2	548.792924	1095.57129	-0.66322	-0.00036397	-0.1589	-8.7201E-05	-0.82212	-0.00045117	548.7928370052983	84.856	0.76266	85.592	85.222	85.984	0.73601					44	14	5	0	0	0	0.074405	1	32206	32206		79.596	46.811	1	5200000			15799	6228	11471	11558	15436	15436					0.027331453345595946
FTAEFSSRY	9	Unmodified	_FTAEFSSRY_					0	0	0		ENSG00000185104|ENST00000396153|FAF1	ENSG00000185104|ENST00000396153|FAF1	ENSG00000185104|ENST00000396153|FAF1	MULTI-SECPEP	A375_MHC_IP_R2	2	554.6412353515625	2	554.258914	1106.50327	-0.93127	-0.00051616	-0.88875	-0.0004926	-1.82	-0.0010088	554.2589487225965	51.214	0.45717	51.966	51.813	52.27	0.75225					11	8	2	0	0	0	0.33896	1	19248	19248		40.239	16.219	1	987430			15800	8641	11472	11559	15437	15437					-0.04571724316087966
FTAELPRKLS	10	Unmodified	_FTAELPRKLS_					0	0	0			REV__nc|ENSG00000152601|Q9NR56|MBNL1	REV__nc|ENSG00000152601|Q9NR56|MBNL1	MULTI-SECPEP	A375_MHC_IP_R2	2	387.2839050292969	3	387.892396	1160.65536	-0.41197	-0.0001598	3.2651	0.0012665	2.8532	0.0011067	388.22856668309134	18.905	0.13086	19.508	19.452	19.583	0.60308					4	2	2	0	0	0	0.94163	1	5728	5728		1.7423	0.14999	1	1551400	+		15801	27293	11473	11560	15438	15438					0.08145676431468019
FTAEQRQEL	9	Unmodified	_FTAEQRQEL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R1	1	561.6826782226562	2	561.28292	1120.55129	-0.78572	-0.00044101	0.17688	9.9281E-05	-0.60884	-0.00034173	561.2831192450575	30.605	0.70757	30.605	30.2	30.908	0					28	13	3	0	0	0	0.0045836	1	9719	9719		135.86	70.628	1	3673800			15802	14788	11474	11561	15439	15439					-0.004166503960504997
FTAEQRQEL	9	Unmodified	_FTAEQRQEL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R2	2	561.6821899414062	2	561.28292	1120.55129	-0.95519	-0.00053613	0.26405	0.0001482	-0.69115	-0.00038793	561.2830113012302	29.864	0.65686	30.563	30.286	30.942	0.69872					26	12	3	0	0	0	0.0023519	1	10490	10490		140.63	75.398	1	5950300			15803	14788	11474	11561	15440	15440					-0.004166503960504997
FTAERSSYY	9	Unmodified	_FTAERSSYY_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	A375_MHC_IP_R1	1	562.65625	2	562.256371	1122.49819	-0.47522	-0.0002672	-0.27457	-0.00015438	-0.7498	-0.00042158	562.2561985367294	34.638	0.50691	34.638	34.405	34.912	0					22	9	3	0	0	0	0.014789	2	11439	11413;11439		90.135	57.829	1	14259000			15804	9124	11475	11562	15441;15442	15442					-0.058160281787195345
FTAERSSYY	9	Unmodified	_FTAERSSYY_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-SECPEP	A375_MHC_IP_R2	2	562.6556396484375	2	562.256371	1122.49819	-1.0202	-0.00057359	-0.12211	-6.8655E-05	-1.1423	-0.00064225	562.2562066363176	33.971	0.505	34.723	34.45	34.955	0.75225					21	9	3	0	0	0	0.3697	1	12194	12194		51.415	36.167	1	16223000			15805	9124	11475	11562	15443	15443					-0.058160281787195345
FTAFPLLNIGY	11	Unmodified	_FTAFPLLNIGY_					0	0	0			REV__tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1	REV__tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	419.97161865234375	3	419.228897	1254.66486	0.28212	0.00011827	0.39456	0.00016541	0.67668	0.00028368	419.5632541140391	51.877	0.45917	51.877	51.575	52.034	0					13	8	2	0	0	0	0.98748	1	18455	18455		7.0371	0.41363	1	1504300	+		15806	28495	11476	11563	15444	15444					0.04771444716993756
FTAFPLLNIGY	11	Unmodified	_FTAFPLLNIGY_					0	0	0			REV__tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1	REV__tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		3	419.228897	1254.66486	-0.17176	-7.2005E-05	0.57332	0.00024035	0.40157	0.00016835	419.22912579652245	50.778	0.45387	51.532	51.311	51.765	0.75406	-0.17283	7.4008E-05	NaN	7.0371	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1437400	+		15807	28495	11476	11563							0.04771444716993756
FTAQPKPAT	9	Unmodified	_FTAQPKPAT_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A;ENST00000506262.1_1_4:39978008-39978209:-|nuORF;PDS5A|p.D54Gfs*18|1|0.29|ENSG00000121892|chr4:39928142-39928143|-/ACTTC|frameshift_variant	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	A375_MHC_IP_R1	1	481.16064453125	2	480.761092	959.507631	-0.45184	-0.00021723	0.0049979	2.4028E-06	-0.44685	-0.00021483	480.7610066491189	23.208	0.55911	23.208	22.974	23.533	0					22	10	4	0	0	0	0.0035129	2	6319	6319;6406		159.1	82.276	1	43571000			15808	3744	11477	11564	15445;15446	15445					0.026257848974637454
FTAQPKPAT	9	Unmodified	_FTAQPKPAT_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A;ENST00000506262.1_1_4:39978008-39978209:-|nuORF;PDS5A|p.D54Gfs*18|1|0.29|ENSG00000121892|chr4:39928142-39928143|-/ACTTC|frameshift_variant	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-SECPEP	A375_MHC_IP_R2	2	480.4449768066406	2	480.761092	959.507631	-0.90868	-0.00043686	-0.27682	-0.00013309	-1.1855	-0.00056994	480.76097086362336	22.186	0.71467	22.806	22.439	23.153	0.61932					21	13	2	0	0	0	0.69381	1	6983	6983		10.8	8.9553	1	1375400			15809	3744	11477	11564	15447	15447					0.026257848974637454
FTAQPKPAT	9	Unmodified	_FTAQPKPAT_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A;ENST00000506262.1_1_4:39978008-39978209:-|nuORF;PDS5A|p.D54Gfs*18|1|0.29|ENSG00000121892|chr4:39928142-39928143|-/ACTTC|frameshift_variant	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-SECPEP	A375_MHC_IP_R2	2	480.4454040527344	2	480.761092	959.507631	-0.88128	-0.00042369	-0.25202	-0.00012116	-1.1333	-0.00054485	480.7609180563909	23.285	0.25271	23.915	23.777	24.029	0.63014					7	4	2	0	0	0	0.78753	1	7417	7417		4.897	0.95262	1	2252800			15810	3744	11477	11564	15448	15448					0.026257848974637454
FTAQPKPAT	9	Unmodified	_FTAQPKPAT_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A;ENST00000506262.1_1_4:39978008-39978209:-|nuORF;PDS5A|p.D54Gfs*18|1|0.29|ENSG00000121892|chr4:39928142-39928143|-/ACTTC|frameshift_variant	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-SECPEP	A375_MHC_IP_R2	2	481.16094970703125	2	480.761092	959.507631	-0.89765	-0.00043155	0.38688	0.000186	-0.51076	-0.00024556	480.7612241332135	20.931	0.60867	21.541	21.21	21.819	0.61029					28	11	3	0	0	0	0.0078253	1	6509	6509		143.91	70.941	1	18282000			15811	3744	11477	11564	15449	15449					0.026257848974637454
FTARDDFAY	9	Unmodified	_FTARDDFAY_					0	0	0		ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	MULTI-MSMS	A375_MHC_IP_R1	1	553.6510620117188	2	553.251089	1104.48762	-0.49063	-0.00027144	0.25539	0.00014129	-0.23524	-0.00013014	553.2512400594026	55.747	0.45772	55.747	55.533	55.991	0					14	8	2	0	0	0	0.29123	1	19953	19953		31.268	17.76	1	3568800			15812	3328	11478	11565	15450	15450					-0.06044010833147695
FTATGQRYF	9	Unmodified	_FTATGQRYF_					0	0	0		ENSG00000018408|ENST00000360632|WWTR1	ENSG00000018408|ENST00000360632|WWTR1	ENSG00000018408|ENST00000360632|WWTR1	MULTI-MSMS	A375_MHC_IP_R1	1	546.2341918945312	2	545.769448	1089.52434	-0.41907	-0.00022872	-1.7554	-0.00095804	-2.1745	-0.0011868	545.7696098725927	51.937	1.1178	51.937	51.525	52.643	0					49	21	3	0	0	0	0.035419	2	18433	18433;18461		70.332	19.477	1	12490000			15813	1046	11479	11566	15451;15452	15451					-0.01683714216574117
FTATGQRYF	9	Unmodified	_FTATGQRYF_					0	0	0		ENSG00000018408|ENST00000360632|WWTR1	ENSG00000018408|ENST00000360632|WWTR1	ENSG00000018408|ENST00000360632|WWTR1	MULTI-MSMS	A375_MHC_IP_R2	2	546.169189453125	2	545.769448	1089.52434	-0.93864	-0.00051228	-2.7974	-0.0015267	-3.736	-0.002039	545.7696010878708	51.152	1.0626	51.905	51.31	52.373	0.75355					52	20	4	0	0	0	0.0096822	1	19281	19281		110.55	32.568	1	6781500			15814	1046	11479	11566	15453	15453					-0.01683714216574117
FTATRPGVY	9	Unmodified	_FTATRPGVY_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-SECPEP	A375_MHC_IP_R1	1	506.6658935546875	2	506.266542	1010.51853	-0.19492	-9.868E-05	-0.64938	-0.00032876	-0.84429	-0.00042744	506.26605725508625	38.668	0.71239	38.668	38.475	39.187	0					18	13	2	0	0	0	0.33896	1	13146	13146		47.594	9.6204	1	6330800			15815	9304	11480	11567	15454	15454					0.01369187271757255
FTATRPGVY	9	Unmodified	_FTATRPGVY_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-SECPEP	A375_MHC_IP_R2	2	506.66595458984375	2	506.266542	1010.51853	-0.92455	-0.00046807	0.039147	1.9819E-05	-0.8854	-0.00044825	506.26641380067355	37.922	0.56441	38.697	38.382	38.946	0.77451					20	10	3	0	0	0	0.33896	1	13916	13916		47.594	13.492	1	7257000			15816	9304	11480	11567	15455	15455					0.01369187271757255
FTCKDCRF	8	Unmodified	_FTCKDCRF_					0	0	0			REV__ENSG00000148143|ENST00000277225|ZNF462	REV__ENSG00000148143|ENST00000277225|ZNF462	MULTI-MSMS	A375_MHC_IP_R1	1	510.67364501953125	2	510.225505	1018.43646	-0.44741	-0.00022828	0.4022	0.00020521	-0.045206	-2.3065E-05	510.2255975490136	61.588	0.76665	61.588	61.279	62.046	0					37	14	4	0	0	0	0.7754	1	22272	22272		11.64	11.64	1	12373000	+		15817	19615	11481	11568	15456	15456					-0.07202374403209433
FTCKPPHMY	9	Unmodified	_FTCKPPHMY_					0	0	0			REV__BCL6|p.S477F|1|0.23|ENSG00000113916|chr3:187728470-187728470|G/A|missense_variant	REV__BCL6|p.S477F|1|0.23|ENSG00000113916|chr3:187728470-187728470|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	562.1973876953125	2	562.256805	1122.49906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.966	1	34.966	34.466	35.466	0								0	0	0	0.15142	1	11583	11583		19.257	1.1106	1		+		15818	15506	11482	11569	15457	15457					-0.057292283350307116
FTCPLCRQFAN	11	2 Carbamidomethyl (C)	_FTC(Carbamidomethyl (C))PLC(Carbamidomethyl (C))RQFAN_	FTC(1)PLC(1)RQFAN		FTC(48)PLC(48)RQFAN		0	2	0		nc|ENSG00000144357|Q6ZT12-2|UBR3;ENST00000430321.5_1_2:170821003-170871346:+|nuORF;ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3	nc|ENSG00000144357|Q6ZT12-2|UBR3;ENSG00000144357|ENST00000272793|UBR3	ENSG00000144357|ENST00000272793|UBR3	MULTI-MSMS	A375_MHC_IP_R2	2	707.72265625	2	707.323739	1412.63293	-0.84612	-0.00059848	-0.35711	-0.00025259	-1.2032	-0.00085107	707.3234774613514	40.537	0.76267	41.312	40.98	41.743	0.77451					49	14	5	0	0	0	0.28899	1	14968	14968		47.594	22.603	1	58374000			15819	14660;5479	11483	11570	15458	15458	37;38				-0.056886143000838274
FTCRCFDGY	9	Carbamidomethyl (C)	_FTC(Carbamidomethyl (C))RCFDGY_	FTC(0.5)RC(0.5)FDGY		FTC(0)RC(0)FDGY		0	1	0		ENSG00000090006|ENST00000396819|LTBP4;nc|ENSG00000090006|Q8N2S1-3|LTBP4;nc|ENSG00000090006|Q8N2S1|LTBP4;ENST00000318809.11_1_19:41120174-41135452:+|nuORF;nc|ENSG00000090006|Q8N2S1-4|LTBP4;ENST00000595118.5_1_19:41119631-41135452:+|nuORF	ENSG00000090006|ENST00000396819|LTBP4	ENSG00000090006|ENST00000396819|LTBP4	MULTI-MSMS	A375_MHC_IP_R1	1	585.1815185546875	2	584.731151	1167.44775	-0.37416	-0.00021878	0.77507	0.00045321	0.40091	0.00023442	584.7315904605632	80.82	0.76167	80.82	80.492	81.253	0					21	14	2	0	0	0	0.10411	1	29525	29525		49.933	35.351	2	3187700			15820	1940	11484	11571	15459	15459	11;12				-0.12927597099724153
FTCRCFDGY	9	Carbamidomethyl (C)	_FTC(Carbamidomethyl (C))RCFDGY_	FTC(0.5)RC(0.5)FDGY		FTC(0)RC(0)FDGY		0	1	0		ENSG00000090006|ENST00000396819|LTBP4;nc|ENSG00000090006|Q8N2S1-3|LTBP4;nc|ENSG00000090006|Q8N2S1|LTBP4;ENST00000318809.11_1_19:41120174-41135452:+|nuORF;nc|ENSG00000090006|Q8N2S1-4|LTBP4;ENST00000595118.5_1_19:41119631-41135452:+|nuORF	ENSG00000090006|ENST00000396819|LTBP4	ENSG00000090006|ENST00000396819|LTBP4	MULTI-SECPEP	A375_MHC_IP_R2	2	585.13134765625	2	584.731151	1167.44775	-0.48877	-0.0002858	0.68981	0.00040335	0.20104	0.00011755	584.7313566126718	80.362	0.55579	81.107	80.81	81.365	0.74474					18	10	2	0	0	0	0.28216	1	30524	30524		49.933	44.201	2	2425000			15821	1940	11484	11571	15460	15460	11;12				-0.12927597099724153
FTCYFIENTT	10	Unmodified	_FTCYFIENTT_					0	0	0			REV__ENST00000492923.1_1_9:5462961-5465689:+|nuORF	REV__ENST00000492923.1_1_9:5462961-5465689:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	414.2803649902344	3	413.518118	1237.53253	-0.26403	-0.00010918	-0.37415	-0.00015472	-0.63818	-0.0002639	413.517930669029	19.222	0.4522	19.825	19.533	19.986	0.60308					17	8	3	0	0	0	0.93799	1	5804	5804		3.5871	0.26742	1	1902800	+		15822	25418	11485	11572	15461	15461					-0.07673948082128845
FTDAGFEHY	9	Unmodified	_FTDAGFEHY_					0	0	0		ENSG00000079335|ENST00000336454|CDC14A;nc|ENSG00000079335|Q9UNH5-5|CDC14A;nc|ENSG00000079335|Q9UNH5-2|CDC14A;nc|ENSG00000079335|Q9UNH5-3|CDC14A	ENSG00000079335|ENST00000336454|CDC14A	ENSG00000079335|ENST00000336454|CDC14A	MULTI-MSMS	A375_MHC_IP_R1	1	544.1298828125	2	543.729989	1085.44543	-0.72503	-0.00039422	0.68607	0.00037304	-0.038961	-2.1184E-05	543.7302342094426	52.741	0.60883	52.741	52.49	53.099	0					26	11	3	0	0	0	0.050162	3	18768	18726;18768;18812		64.236	31.931	1	7385200			15823	1694	11486	11573	15462;15463;15464	15463					-0.09387986241517865
FTDAGFEHY	9	Unmodified	_FTDAGFEHY_					0	0	0		ENSG00000079335|ENST00000336454|CDC14A;nc|ENSG00000079335|Q9UNH5-5|CDC14A;nc|ENSG00000079335|Q9UNH5-2|CDC14A;nc|ENSG00000079335|Q9UNH5-3|CDC14A	ENSG00000079335|ENST00000336454|CDC14A	ENSG00000079335|ENST00000336454|CDC14A	MULTI-MSMS	A375_MHC_IP_R2	2	543.6445922851562	2	543.729989	1085.44543	-1.1821	-0.00064273	0.42061	0.0002287	-0.76147	-0.00041403	543.7301760471549	52.109	0.60852	52.861	52.626	53.234	0.75225					26	11	3	0	0	0	0.05754	3	19624	19570;19624;19735		61.357	30.721	1	8218200			15824	1694	11486	11573	15465;15466;15467	15466					-0.09387986241517865
FTDAWQRSF	9	Unmodified	_FTDAWQRSF_					0	0	0			REV__ENSG00000105875|ENST00000354475|WDR91	REV__ENSG00000105875|ENST00000354475|WDR91	MULTI-SECPEP	A375_MHC_IP_R1	1	386.3157043457031	3	386.517329	1156.53016	0.30935	0.00011957	-1.5178	-0.00058664	-1.2084	-0.00046707	386.85180330749955	40.696	0.35387	40.696	40.559	40.913	0					15	6	3	0	0	0	0.77834	1	13985	13985		2.7352	1.2801	1	2258400	+		15825	17415	11487	11574	15468	15468					-0.04184615704912176
FTDEEGYGRY	10	Unmodified	_FTDEEGYGRY_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3;ENST00000446317.1_1_20:3471092-3471287:-|nuORF;ENST00000470585.5_1_1:38445118-38455637:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	A375_MHC_IP_R1	1	619.6632080078125	2	618.762017	1235.50948	-0.26761	-0.00016559	-0.10327	-6.39E-05	-0.37088	-0.00022949	618.7619092068593	37.58	1.0707	37.58	37.301	38.371	0					58	20	5	0	0	0	0.0091306	1	12626	12626		128.93	86.977	1	113430000			15826	8493;12337	11488	11575	15469	15469					-0.09885250875231577
FTDEEGYGRYL	11	Unmodified	_FTDEEGYGRYL_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3;ENST00000446317.1_1_20:3471092-3471287:-|nuORF;ENST00000470585.5_1_1:38445118-38455637:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	A375_MHC_IP_R1	1	676.25830078125	2	675.304049	1348.59355	-0.97713	-0.00065986	0.79356	0.00053589	-0.18357	-0.00012397	675.3044832783366	67.49	0.71161	67.49	67.143	67.854	0					26	13	3	0	0	0	0.7039	1	24402	24402		15.248	8.5253	1	3842400			15827	8493;12337	11489	11576	15470	15470					-0.06680719778319144
FTDEEGYGRYL	11	Unmodified	_FTDEEGYGRYL_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3;ENST00000446317.1_1_20:3471092-3471287:-|nuORF;ENST00000470585.5_1_1:38445118-38455637:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3	MULTI-SECPEP	A375_MHC_IP_R2	2	675.7037353515625	2	675.304049	1348.59355	-0.7558	-0.00051039	-0.046653	-3.1505E-05	-0.80245	-0.0005419	675.3040636365618	66.942	0.55752	67.678	67.393	67.951	0.73631					22	10	3	0	0	0	0.041007	1	25360	25360		84.522	58.254	1	4529300			15828	8493;12337	11489	11576	15471	15471					-0.06680719778319144
FTDEEVDELY	10	Unmodified	_FTDEEVDELY_					0	0	0		ENSG00000118680|ENST00000237500|MYL12B;ENSG00000101608|ENST00000217652|MYL12A;ENST00000431574.1_1_6:33306912-33307269:+|nuORF	ENSG00000118680|ENST00000237500|MYL12B	ENSG00000118680|ENST00000237500|MYL12B	MULTI-SECPEP	A375_MHC_IP_R2	2	630.669677734375	2	630.269341	1258.52413	-0.71623	-0.00045142	-0.2202	-0.00013879	-0.93644	-0.00059021	630.2694176106269	89.953	0.92075	90.685	90.287	91.208	0.7318					34	17	3	0	0	0	0.27864	1	34196	34196		49.933	36.027	1	3289300			15829	2313	11490	11577	15472	15472					-0.09479223517746505
FTDELRQRY	9	Unmodified	_FTDELRQRY_					0	0	0		ENSG00000176978|ENST00000371579|DPP7;ENST00000483783.1_1_9:140005102-140007040:-|nuORF	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MULTI-SECPEP	A375_MHC_IP_R1	1	410.2752380371094	3	409.875405	1226.60439	-0.16423	-6.7315E-05	-0.25034	-0.00010261	-0.41457	-0.00016992	409.87518739661743	33.014	0.35399	33.014	32.887	33.241	0					9	6	2	0	0	0	0.5212	1	10772	10772		14.957	3.4393	1	1990700			15830	8048	11491	11578	15473	15473					0.00014727386633239803
FTDELRQRY	9	Unmodified	_FTDELRQRY_					0	0	0		ENSG00000176978|ENST00000371579|DPP7;ENST00000483783.1_1_9:140005102-140007040:-|nuORF	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MULTI-MATCH	A375_MHC_IP_R2	2		3	409.875405	1226.60439	-0.0097893	-4.0124E-06	-0.4788	-0.00019625	-0.48859	-0.00020026	409.8751210089488	32.309	0.30493	33.046	32.857	33.162	0.73692	0.015706	-2.7785E-05	NaN	22.775	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1844400			15831	8048	11491	11578							0.00014727386633239803
FTDESYLELY	10	Unmodified	_FTDESYLELY_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;ENST00000485606.1_1_1:11140819-11141291:-|nuORF	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	A375_MHC_IP_R1	1	640.6900024414062	2	640.290076	1278.5656	-0.43697	-0.00027979	-0.17582	-0.00011258	-0.61279	-0.00039236	640.2900181902849	117.59	0.5078	117.59	117.31	117.82	0					16	9	2	0	0	0	0.011608	1	43188	43188		115.69	75.735	1	8557800			15832	7646	11492	11579	15474	15474					-0.06254042758428113
FTDESYLELY	10	Unmodified	_FTDESYLELY_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;ENST00000485606.1_1_1:11140819-11141291:-|nuORF	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	A375_MHC_IP_R2	2	640.6892700195312	2	640.290076	1278.5656	-0.60148	-0.00038512	-0.60519	-0.0003875	-1.2067	-0.00077262	640.2897459775421	116.86	0.60943	117.52	117.28	117.89	0.65962					19	11	2	0	0	0	0.053475	1	44211	44211		74.929	42.624	1	6816900			15833	7646	11492	11579	15475	15475					-0.06254042758428113
FTDFDLEPQDS	11	Unmodified	_FTDFDLEPQDS_					0	0	0		ENSG00000107611|ENST00000377833|CUBN	ENSG00000107611|ENST00000377833|CUBN	ENSG00000107611|ENST00000377833|CUBN	MULTI-MSMS	A375_MHC_IP_R1	1	438.92254638671875	3	438.522585	1312.54593	-0.28296	-0.00012408	0.41467	0.00018184	0.13171	5.7757E-05	438.5228565472874	32.982	0.30311	32.982	32.836	33.14	0					11	5	3	0	0	0	0.7353	1	10763	10763		3.8459	0.25885	1	2533900			15834	2745	11493	11580	15476	15476					-0.09784418769186232
FTDFDLEPQDS	11	Unmodified	_FTDFDLEPQDS_					0	0	0		ENSG00000107611|ENST00000377833|CUBN	ENSG00000107611|ENST00000377833|CUBN	ENSG00000107611|ENST00000377833|CUBN	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	438.522585	1312.54593	-0.28296	-0.00012408	0.41467	0.00018184	0.13171	5.7757E-05	438.5228565472874	32.982	0.30311	32.982	32.836	33.14	0	0.0096167	-0.00025462	NaN	3.8459	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2533900			15835	2745	11493	11580							-0.09784418769186232
FTDFDLEPQDS	11	Unmodified	_FTDFDLEPQDS_					0	0	0		ENSG00000107611|ENST00000377833|CUBN	ENSG00000107611|ENST00000377833|CUBN	ENSG00000107611|ENST00000377833|CUBN	MULTI-MATCH	A375_MHC_IP_R2	2		3	438.522585	1312.54593	-0.32975	-0.0001446	0.70568	0.00030946	0.37593	0.00016485	438.5228878706304	32.226	0.30493	32.963	32.857	33.162	0.73691	-0.0096167	0.00012823	NaN	3.8459	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1928800			15836	2745	11493	11580							-0.09784418769186232
FTDGDAALEF	10	Unmodified	_FTDGDAALEF_					0	0	0		ENSG00000173545|ENST00000308683|ZNF622	ENSG00000173545|ENST00000308683|ZNF622	ENSG00000173545|ENST00000308683|ZNF622	MULTI-MSMS	A375_MHC_IP_R2	2	543.6424560546875	2	543.242929	1084.47131	-0.6714	-0.00036473	0.1532	8.3222E-05	-0.5182	-0.00028151	543.2429834364822	99.106	0.6097	99.865	99.454	100.06	0.75977					17	11	2	0	0	0	0.19329	1	37614	37614		49.933	13.806	1	1937300			15837	7806	11494	11581	15477	15477					-0.06755136789888638
FTDGITRTY	9	Unmodified	_FTDGITRTY_					0	0	0		ENST00000294309.7_2_11:68821527-68822650:+|nuORF	ENST00000294309.7_2_11:68821527-68822650:+|nuORF	ENST00000294309.7_2_11:68821527-68822650:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	537.6668090820312	2	537.266739	1072.51892	-0.51572	-0.00027708	-0.42558	-0.00022865	-0.9413	-0.00050573	537.2665138328214	43.199	0.96738	43.199	42.891	43.859	0					41	18	3	0	0	0	0.014055	1	15016	15016		91.085	52.909	1	14608000			15838	10487	11495	11582	15478	15478					-0.014434377990255598
FTDGITRTY	9	Unmodified	_FTDGITRTY_					0	0	0		ENST00000294309.7_2_11:68821527-68822650:+|nuORF	ENST00000294309.7_2_11:68821527-68822650:+|nuORF	ENST00000294309.7_2_11:68821527-68822650:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	537.6663208007812	2	537.266739	1072.51892	-0.80757	-0.00043388	-0.80158	-0.00043066	-1.6092	-0.00086454	537.2663296495338	42.501	0.91532	43.273	42.86	43.775	0.7724					38	17	3	0	0	0	0.014055	1	15784	15784		91.085	52.909	1	14578000			15839	10487	11495	11582	15479	15479					-0.014434377990255598
FTDGQQLY	8	Unmodified	_FTDGQQLY_					0	0	0		nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC	nc|ENSG00000066136|Q13952-4|NFYC	nc|ENSG00000066136|Q13952-4|NFYC	MULTI-MSMS	A375_MHC_IP_R1	1	486.6272277832031	2	486.227082	970.439611	-0.29649	-0.00014416	0.19292	9.3804E-05	-0.10357	-5.0357E-05	486.22713802591085	58.224	0.8631	58.224	57.873	58.736	0					43	16	4	0	0	0	0.15346	1	20915	20915		85.357	37.011	1	5786100			15840	1405	11496	11583	15480	15480					-0.04679084753195184
FTDGQQLY	8	Unmodified	_FTDGQQLY_					0	0	0		nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC	nc|ENSG00000066136|Q13952-4|NFYC	nc|ENSG00000066136|Q13952-4|NFYC	MULTI-MSMS	A375_MHC_IP_R2	2	486.6919860839844	2	486.227082	970.439611	-0.91746	-0.00044609	0.13385	6.5081E-05	-0.78361	-0.00038101	486.2270863362591	57.652	0.9625	58.401	57.917	58.879	0.74894					38	18	3	0	0	0	0.15346	1	21817	21817		85.357	40.95	1	7391100			15841	1405	11496	11583	15481	15481					-0.04679084753195184
FTDHELQEWY	10	Unmodified	_FTDHELQEWY_					0	0	0		ENSG00000115756|ENST00000307845|HPCAL1	ENSG00000115756|ENST00000307845|HPCAL1	ENSG00000115756|ENST00000307845|HPCAL1	MULTI-MSMS	A375_MHC_IP_R1	1	684.6978149414062	2	684.298767	1366.58298	-0.48568	-0.00033235	0.42263	0.0002892	-0.063055	-4.3148E-05	684.2987580082423	82.164	0.40498	82.164	81.86	82.265	0					13	7	3	0	0	0	0.56097	1	30054	30054		23.79	11.549	1	2153400			15842	3335	11497	11584	15482	15482					-0.08564702432727245
FTDHELQEWY	10	Unmodified	_FTDHELQEWY_					0	0	0		ENSG00000115756|ENST00000307845|HPCAL1	ENSG00000115756|ENST00000307845|HPCAL1	ENSG00000115756|ENST00000307845|HPCAL1	MULTI-MATCH	A375_MHC_IP_R2	2		2	684.298767	1366.58298	-0.73494	-0.00050292	-0.40568	-0.00027761	-1.1406	-0.00078053	684.2986175158584	81.613	0.45456	82.356	82.078	82.533	0.74293	0.09613	-0.00032874	NaN	23.79	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1455500			15843	3335	11497	11584							-0.08564702432727245
FTDIDGQVY	9	Unmodified	_FTDIDGQVY_					0	0	0		ENST00000497136.6_1_10:122626245-122665534:+|nuORF;ENSG00000120008|ENST00000263461|WDR11;ENST00000478567.5_1_10:122645388-122659588:+|nuORF;ENST00000604509.5_1_10:122640390-122648742:+|nuORF	ENST00000497136.6_1_10:122626245-122665534:+|nuORF	ENST00000497136.6_1_10:122626245-122665534:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	529.6453247070312	2	529.245472	1056.47639	-0.32818	-0.00017369	-0.52574	-0.00027824	-0.85392	-0.00045193	529.245157556359	71.76	0.70425	71.76	71.415	72.119	0					20	13	2	0	0	0	0.047602	1	26085	26085		65.235	19.214	1	4669300			15844	3644	11498	11585	15483	15483					-0.049588329272637566
FTDIDGQVY	9	Unmodified	_FTDIDGQVY_					0	0	0		ENST00000497136.6_1_10:122626245-122665534:+|nuORF;ENSG00000120008|ENST00000263461|WDR11;ENST00000478567.5_1_10:122645388-122659588:+|nuORF;ENST00000604509.5_1_10:122640390-122648742:+|nuORF	ENST00000497136.6_1_10:122626245-122665534:+|nuORF	ENST00000497136.6_1_10:122626245-122665534:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	529.644775390625	2	529.245472	1056.47639	-0.75439	-0.00039926	-0.34315	-0.00018161	-1.0975	-0.00058087	529.2451999275852	71.197	0.55743	71.931	71.656	72.213	0.73421					23	10	3	0	0	0	0.033557	2	26989	26942;26989		71.922	17.149	1	5027100			15845	3644	11498	11585	15484;15485	15485					-0.049588329272637566
FTDIDGQVY	9	Unmodified	_FTDIDGQVY_					0	0	0		ENST00000497136.6_1_10:122626245-122665534:+|nuORF;ENSG00000120008|ENST00000263461|WDR11;ENST00000478567.5_1_10:122645388-122659588:+|nuORF;ENST00000604509.5_1_10:122640390-122648742:+|nuORF	ENST00000497136.6_1_10:122626245-122665534:+|nuORF	ENST00000497136.6_1_10:122626245-122665534:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	529.6453857421875	2	529.245472	1056.47639	-0.61741	-0.00032676	0.49722	0.00026315	-0.12019	-6.3609E-05	529.2455826124203	72.779	2.3883	73.514	72.721	75.109	0.7354					108	46	5	0	0	0	0.026268	1	27564	27564		78.149	3.7266	1	19715000			15846	3644	11498	11585	15486	15486					-0.049588329272637566
FTDIDGQVY	9	Unmodified	_FTDIDGQVY_					0	0	0		ENST00000497136.6_1_10:122626245-122665534:+|nuORF;ENSG00000120008|ENST00000263461|WDR11;ENST00000478567.5_1_10:122645388-122659588:+|nuORF;ENST00000604509.5_1_10:122640390-122648742:+|nuORF	ENST00000497136.6_1_10:122626245-122665534:+|nuORF	ENST00000497136.6_1_10:122626245-122665534:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1058.160400390625	1	1057.48367	1056.47639	0.01374	1.453E-05	-0.15183	-0.00016056	-0.13809	-0.00014603	1057.4834600520458	72.769	2.847	73.505	73.124	75.971	0.73541					119	55	4	0	0	0	0.0098085	3	27847	27847;28258;28460		114.2	50.241	1	66867000			15847	3644	11498	11585	15487;15488;15489	15487					-0.049588329272637566
FTDIDGQVY	9	Unmodified	_FTDIDGQVY_					0	0	0		ENST00000497136.6_1_10:122626245-122665534:+|nuORF;ENSG00000120008|ENST00000263461|WDR11;ENST00000478567.5_1_10:122645388-122659588:+|nuORF;ENST00000604509.5_1_10:122640390-122648742:+|nuORF	ENST00000497136.6_1_10:122626245-122665534:+|nuORF	ENST00000497136.6_1_10:122626245-122665534:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	1057.48367	1056.47639	0.13686	0.00014472	0.1722	0.0001821	0.30906	0.00032682	1057.4837643989754	73.366	2.4839	73.366	72.728	75.211	0	-0.069265	0.00016813	NaN	114.2	116	48	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71463000			15848	3644	11498	11585							-0.049588329272637566
FTDIRKKS	8	Unmodified	_FTDIRKKS_					0	0	0		nc|ENSG00000163166|Q96ST2-2|IWS1;nc|ENSG00000163166|Q96ST2-3|IWS1;ENSG00000163166|ENST00000295321|IWS1	nc|ENSG00000163166|Q96ST2-2|IWS1	nc|ENSG00000163166|Q96ST2-2|IWS1	MULTI-SECPEP	A375_MHC_IP_R1	1	498.1877136230469	2	497.787641	993.56073	-0.38636	-0.00019233	-0.054433	-2.7096E-05	-0.44079	-0.00021942	497.7875838319704	74.121	0.86072	74.121	73.539	74.4	0					27	16	2	0	0	0	0.91495	1	26948	26948		18.135	10.225	1	3065100			15849	6635	11499	11586	15490	15490					0.06369162680141471
FTDITKGVQY	10	Unmodified	_FTDITKGVQY_					0	0	0		EEF2|p.L662F|1|0.19|ENSG00000167658|chr19:3977902-3977902|G/A|missense_variant	EEF2|p.L662F|1|0.19|ENSG00000167658|chr19:3977902-3977902|G/A|missense_variant	EEF2|p.L662F|1|0.19|ENSG00000167658|chr19:3977902-3977902|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	586.7032470703125	2	586.303321	1170.59209	-0.33467	-0.00019622	0.6697	0.00039265	0.33503	0.00019643	586.3037208230339	58.494	0.50837	58.494	58.228	58.736	0					18	9	3	0	0	0	0.2729	1	21035	21035		63.227	31.959	1	2089300			15850	822	11500	11587	15491	15491					0.01361690923590686
FTDKCYYF	8	Unmodified	_FTDKCYYF_					0	0	0		ENST00000582147.1_1_18:320047-333168:-|nuORF;ENSG00000158270|ENST00000400256|COLEC12	ENST00000582147.1_1_18:320047-333168:-|nuORF	ENST00000582147.1_1_18:320047-333168:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	544.1321411132812	2	543.733686	1085.45282	-1.3156	-0.00071536	-0.78281	-0.00042564	-2.0984	-0.001141	543.732863752311	52.766	0.76075	53.517	53.183	53.944	0.75105					18	14	2	0	0	0	0.72109	1	19914	19914		28.173	7.7196	1	1949500			15851	6297	11501	11588	15492	15492					-0.08648969965452125
FTDKELLAY	9	Unmodified	_FTDKELLAY_					0	0	0		ABCB1|p.T1015Pfs*3|1|0.21|ENSG00000085563|chr7:87516550-87516550|T/-|frameshift_variant;nc|ENSG00000085563|P08183-2|ABCB1;ENSG00000085563|ENST00000622132|ABCB1	ABCB1|p.T1015Pfs*3|1|0.21|ENSG00000085563|chr7:87516550-87516550|T/-|frameshift_variant	ABCB1|p.T1015Pfs*3|1|0.21|ENSG00000085563|chr7:87516550-87516550|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	550.687744140625	2	550.28714	1098.55973	-0.35818	-0.0001971	0.37301	0.00020527	0.01484	8.166E-06	550.2872713652605	72.19	1.6212	72.19	71.715	73.336	0					63	31	4	0	0	0	0.091861	1	26206	26206		86.332	62.311	1	14866000			15852	8	11502	11589	15493	15493					0.01438903520556778
FTDKELLAY	9	Unmodified	_FTDKELLAY_					0	0	0		ABCB1|p.T1015Pfs*3|1|0.21|ENSG00000085563|chr7:87516550-87516550|T/-|frameshift_variant;nc|ENSG00000085563|P08183-2|ABCB1;ENSG00000085563|ENST00000622132|ABCB1	ABCB1|p.T1015Pfs*3|1|0.21|ENSG00000085563|chr7:87516550-87516550|T/-|frameshift_variant	ABCB1|p.T1015Pfs*3|1|0.21|ENSG00000085563|chr7:87516550-87516550|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	550.616455078125	2	550.28714	1098.55973	-1.0566	-0.00058144	0.56589	0.0003114	-0.49072	-0.00027004	550.2873647834938	71.468	1.2149	72.202	71.806	73.021	0.73421					49	23	4	0	0	0	0.059142	1	27122	27122		106.94	49.469	1	16661000			15853	8	11502	11589	15494	15494					0.01438903520556778
FTDKFCEKY	9	Unmodified	_FTDKFCEKY_					0	0	0		ENSG00000007384|ENST00000262316|RHBDF1	ENSG00000007384|ENST00000262316|RHBDF1	ENSG00000007384|ENST00000262316|RHBDF1	MULTI-SECPEP	A375_MHC_IP_R2	2	394.60858154296875	3	394.182959	1179.52705	-0.48122	-0.00018969	0.17657	6.9599E-05	-0.30465	-0.00012009	394.18296120003276	38.233	0.56144	39.007	38.739	39.3	0.77451					21	10	3	0	0	0	0.53098	1	14090	14090		20.871	15.824	1	1830300			15854	942	11503	11590	15495	15495					-0.05553626873916073
FTDKKTHLY	9	Unmodified	_FTDKKTHLY_					0	0	0		ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX	ENSG00000127022|ENST00000247461|CANX	ENSG00000127022|ENST00000247461|CANX	MULTI-MSMS	A375_MHC_IP_R1	1	384.8787536621094	3	384.873113	1151.59751	0.23568	9.0708E-05	0.1987	7.6473E-05	0.43438	0.00016718	384.8731726338807	19.858	0.91367	19.858	19.571	20.485	0					56	17	6	0	0	0	0.0090297	1	5009	5009		81.915	52.478	1	84023000			15855	4073	11504	11591	15496	15496					0.027774145060675437
FTDKKTHLY	9	Unmodified	_FTDKKTHLY_					0	0	0		ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX	ENSG00000127022|ENST00000247461|CANX	ENSG00000127022|ENST00000247461|CANX	MULTI-MSMS	A375_MHC_IP_R1	1	384.87872314453125	3	384.873113	1151.59751	0.62881	0.00024201	-0.38183	-0.00014696	0.24699	9.5058E-05	384.87289836452726	22.19	1.068	22.19	21.555	22.623	0					26	20	2	0	0	0	0.68705	1	5970	5970		5.4027	2.9679	1	7068700			15856	4073	11504	11591	15497	15497					0.027774145060675437
FTDKKTHLY	9	Unmodified	_FTDKKTHLY_					0	0	0		ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX	ENSG00000127022|ENST00000247461|CANX	ENSG00000127022|ENST00000247461|CANX	MULTI-SECPEP	A375_MHC_IP_R1	1	577.2059326171875	2	576.806031	1151.59751	-0.20828	-0.00012014	-0.066059	-3.8103E-05	-0.27434	-0.00015824	576.8059328744289	19.893	0.50672	19.893	19.623	20.129	0					26	9	4	0	0	0	0.040539	1	4995	4995		100.71	70.072	1	10691000			15857	4073	11504	11591	15498	15498					0.027774145060675437
FTDKKTHLY	9	Unmodified	_FTDKKTHLY_					0	0	0		ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX	ENSG00000127022|ENST00000247461|CANX	ENSG00000127022|ENST00000247461|CANX	MULTI-MSMS	A375_MHC_IP_R2	2	385.5925598144531	3	384.873113	1151.59751	-0.38713	-0.000149	0.12144	4.6738E-05	-0.26569	-0.00010226	384.8731594325075	18.955	0.46136	19.559	19.423	19.884	0.60308					32	10	5	0	0	0	0.035419	1	5718	5718		57.108	15.761	1	136350000			15858	4073	11504	11591	15499	15499					0.027774145060675437
FTDKKTHLY	9	Unmodified	_FTDKKTHLY_					0	0	0		ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX	ENSG00000127022|ENST00000247461|CANX	ENSG00000127022|ENST00000247461|CANX	MULTI-MSMS	A375_MHC_IP_R2	2	384.8783264160156	3	384.873113	1151.59751	-0.45829	-0.00017639	0.50714	0.00019518	0.048847	1.88E-05	384.8732342830664	21.691	0.7136	22.311	22.132	22.846	0.61932					22	13	3	0	0	0	0.73804	1	6911	6911		2.086	0.24177	1	5276800			15859	4073	11504	11591	15500	15500					0.027774145060675437
FTDKKTHLY	9	Unmodified	_FTDKKTHLY_					0	0	0		ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX	ENSG00000127022|ENST00000247461|CANX	ENSG00000127022|ENST00000247461|CANX	MULTI-SECPEP	A375_MHC_IP_R2	2	576.0968017578125	2	576.806031	1151.59751	-0.050238	-2.8978E-05	-3.232	-0.0018642	-3.2822	-0.0018932	577.304355095222	68.493	0.30408	69.229	69.018	69.323	0.73511					6	5	2	0	0	0	0.69504	1	25939	25939		12.532	7.7755	1	1811400			15860	4073	11504	11591	15501	15501					0.027774145060675437
FTDKKTHLY	9	Unmodified	_FTDKKTHLY_					0	0	0		ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX	ENSG00000127022|ENST00000247461|CANX	ENSG00000127022|ENST00000247461|CANX	MULTI-SECPEP	A375_MHC_IP_R2	2	577.2056884765625	2	576.806031	1151.59751	-0.43085	-0.00024852	-0.55329	-0.00031914	-0.98414	-0.00056766	576.8057332195173	18.955	0.19953	19.559	19.483	19.683	0.60308					8	3	3	0	0	0	0.044425	1	5765	5765		87.258	59.629	1	16554000			15861	4073	11504	11591	15502	15502					0.027774145060675437
FTDKKTHLY	9	Unmodified	_FTDKKTHLY_					0	0	0		ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX	ENSG00000127022|ENST00000247461|CANX	ENSG00000127022|ENST00000247461|CANX	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	384.873113	1151.59751	-0.45829	-0.00017639	0.50714	0.00019518	0.048847	1.88E-05	384.8732342830664	21.691	0.7136	22.311	22.132	22.846	0.61932	0.060463	0.0006024	NaN	5.4027	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5276800			15862	4073	11504	11591							0.027774145060675437
FTDKSAEDY	9	Unmodified	_FTDKSAEDY_					0	0	0		ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;ENST00000533568.5_1_11:77069900-77103583:-|nuORF	ENSG00000149269|ENST00000356341|PAK1	ENSG00000149269|ENST00000356341|PAK1	MULTI-MSMS	A375_MHC_IP_R1	1	538.6322021484375	2	538.232561	1074.45057	-0.92096	-0.00049569	-0.024059	-1.2949E-05	-0.94501	-0.00050864	538.2324818341065	25.892	0.40404	25.892	25.714	26.118	0					13	7	2	0	0	0	0.0092755	1	7641	7641		103.82	65.85	1	6574100			15863	5795	11505	11592	15503	15503					-0.08367727169547834
FTDKSAEDY	9	Unmodified	_FTDKSAEDY_					0	0	0		ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;ENST00000533568.5_1_11:77069900-77103583:-|nuORF	ENSG00000149269|ENST00000356341|PAK1	ENSG00000149269|ENST00000356341|PAK1	MULTI-MSMS	A375_MHC_IP_R2	2	538.6319580078125	2	538.232561	1074.45057	-1.3052	-0.0007025	0.48921	0.00026331	-0.81599	-0.00043919	538.2327349619453	25.386	0.66259	26.03	25.719	26.382	0.64368					17	12	3	0	0	0	0.0020207	1	8477	8477		155.95	86.849	1	6474900			15864	5795	11505	11592	15504	15504					-0.08367727169547834
FTDLITNE	8	Unmodified	_FTDLITNE_					0	0	0		ENSG00000137573|ENST00000402687|SULF1	ENSG00000137573|ENST00000402687|SULF1	ENSG00000137573|ENST00000402687|SULF1	MSMS	A375_MHC_IP_R2	2	476.6315002441406	2	476.73474	951.454927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.378	1	58.127	57.627	58.627	0.74894								0	0	0	0.16876	1	21696	21696		13.508	1.8676	1				15865	4896	11506	11593	15505	15505					-0.022742179560054865
FTDNYSDLE	9	Unmodified	_FTDNYSDLE_					0	0	0		nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF;ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	MULTI-MSMS	A375_MHC_IP_R1	1	552.7142333984375	2	552.230019	1102.44548	-0.65088	-0.00035943	-1.1815	-0.00065248	-1.8324	-0.0010119	552.2299553766268	53.199	0.65801	53.199	52.847	53.505	0					14	12	2	0	0	0	0.58047	1	19005	19005		15.847	3.3156	1	683180			15866	4918	11507	11594	15506	15506					-0.10164031032172716
FTDPGMGNLTY	11	Oxidation (M)	_FTDPGM(Oxidation (M))GNLTY_		FTDPGM(1)GNLTY		FTDPGM(59)GNLTY	0	0	1		ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MULTI-MSMS	A375_MHC_IP_R1	1	616.6691284179688	2	616.268621	1230.52269	-0.19437	-0.00011978	0.26837	0.00016538	0.073994	4.56E-05	616.2693245037134	68.944	0.6082	68.944	68.616	69.224	0					22	11	2	0	0	0	0.16228	1	24963	24963		59.368	24.967	1	2057300			15867	4587	11508	11595	15507	15507		238			-0.0833513608749854
FTDPGMGNLTY	11	Oxidation (M)	_FTDPGM(Oxidation (M))GNLTY_		FTDPGM(1)GNLTY		FTDPGM(87)GNLTY	0	0	1		ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MULTI-MSMS	A375_MHC_IP_R2	2	616.6685180664062	2	616.268621	1230.52269	-0.52166	-0.00032148	0.46317	0.00028544	-0.058495	-3.6048E-05	616.269204803018	68.32	0.55787	69.055	68.765	69.323	0.73511					26	10	3	0	0	0	0.020352	1	25896	25896		87.258	55.99	1	2460700			15868	4587	11508	11595	15508	15508		238			-0.0833513608749854
FTDPGMGNLTY	11	Unmodified	_FTDPGMGNLTY_					0	0	0		ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MULTI-SECPEP	A375_MHC_IP_R2	2	608.9376831054688	2	608.271164	1214.52777	-0.32851	-0.00019983	-0.33337	-0.00020278	-0.66189	-0.00040261	608.2710563363042	90.224	0.45792	90.956	90.699	91.157	0.7318					13	8	2	0	0	0	0.51751	1	34323	34323		35.612	11.592	1	985710			15869	4587	11508	11596	15509	15509					-0.07090832224866972
FTDPGMGNLTY	11	Unmodified	_FTDPGMGNLTY_					0	0	0		ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MULTI-MATCH	A375_MHC_IP_R1	1		2	608.271164	1214.52777	-0.58208	-0.00035406	-0.37554	-0.00022843	-0.95762	-0.00058249	608.7728350184013	90.837	0.45801	90.837	90.539	90.997	0	-0.059711	-2.0819E-05	NaN	35.612	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1216600			15870	4587	11508	11596							-0.07090832224866972
FTDPGQVAY	9	Unmodified	_FTDPGQVAY_					0	0	0		nc|ENSG00000170325|Q9NQV6|PRDM10;ENSG00000170325|ENST00000360871|PRDM10;nc|ENSG00000170325|Q9NQV6-7|PRDM10;nc|ENSG00000170325|Q9NQV6-6|PRDM10	nc|ENSG00000170325|Q9NQV6|PRDM10	nc|ENSG00000170325|Q9NQV6|PRDM10	MULTI-MSMS	A375_MHC_IP_R1	1	500.1793212890625	2	499.234907	996.455261	-0.38318	-0.0001913	0.015816	7.8958E-06	-0.36736	-0.0001834	499.2348852888605	61.661	1.1761	61.661	61.227	62.403	0					61	22	4	0	0	0	0.0095277	1	22195	22195		108	77.36	1	57292000			15871	7495	11509	11597	15510	15510					-0.04310798236133451
FTDPGQVAY	9	Unmodified	_FTDPGQVAY_					0	0	0		nc|ENSG00000170325|Q9NQV6|PRDM10;ENSG00000170325|ENST00000360871|PRDM10;nc|ENSG00000170325|Q9NQV6-7|PRDM10;nc|ENSG00000170325|Q9NQV6-6|PRDM10	nc|ENSG00000170325|Q9NQV6|PRDM10	nc|ENSG00000170325|Q9NQV6|PRDM10	MULTI-SECPEP	A375_MHC_IP_R2	2	499.4850158691406	2	499.234907	996.455261	-0.85057	-0.00042464	-0.25557	-0.00012759	-1.1061	-0.00055223	499.23473682300613	60.948	1.2095	61.693	61.364	62.573	0.74503					64	23	4	0	0	0	0.021422	1	23164	23164		108	78.915	1	103390000			15872	7495	11509	11597	15511	15511					-0.04310798236133451
FTDPRAYLKY	10	Unmodified	_FTDPRAYLKY_					0	0	0		ENSG00000026652|ENST00000320285|AGPAT4	ENSG00000026652|ENST00000320285|AGPAT4	ENSG00000026652|ENST00000320285|AGPAT4	MULTI-SECPEP	A375_MHC_IP_R1	1	425.62408447265625	3	425.224034	1272.65027	-0.043379	-1.8446E-05	-0.39984	-0.00017002	-0.44322	-0.00018847	425.223857870347	72.97	0.71074	72.97	72.524	73.235	0					35	13	4	0	0	0	0.67395	1	26541	26541		37.075	16.494	1	2679400			15873	1096	11510	11598	15512	15512					0.024853725688444683
FTDPRAYLKY	10	Unmodified	_FTDPRAYLKY_					0	0	0		ENSG00000026652|ENST00000320285|AGPAT4	ENSG00000026652|ENST00000320285|AGPAT4	ENSG00000026652|ENST00000320285|AGPAT4	MULTI-SECPEP	A375_MHC_IP_R2	2	425.623779296875	3	425.224034	1272.65027	-0.36572	-0.00015551	-0.28177	-0.00011982	-0.64749	-0.00027533	425.2239474661342	72.151	0.6582	72.885	72.567	73.225	0.73421					24	12	2	0	0	0	0.83425	1	27392	27392		24.882	10.663	1	1746200			15874	1096	11510	11598	15513	15513					0.024853725688444683
FTDPRTMGY	9	Oxidation (M)	_FTDPRTM(Oxidation (M))GY_		FTDPRTM(1)GY		FTDPRTM(120)GY	0	0	1		ENSG00000140650|ENST00000268261|PMM2;ENST00000567697.1_1_16:8904837-8941679:+|nuORF	ENSG00000140650|ENST00000268261|PMM2	ENSG00000140650|ENST00000268261|PMM2	MULTI-MSMS	A375_MHC_IP_R1	1	552.2178344726562	2	552.244949	1102.47534	-0.77707	-0.00042913	0.036589	2.0206E-05	-0.74048	-0.00040893	552.2449968541498	36.426	1.0632	36.426	35.982	37.045	0					68	20	5	0	0	0	0.0099679	3	12149	12112;12149;12363		121.53	60.177	1	28565000			15875	5174	11511	11599	15514;15515;15516	15515		276			-0.07179370567814658
FTDPRTMGY	9	Oxidation (M)	_FTDPRTM(Oxidation (M))GY_		FTDPRTM(1)GY		FTDPRTM(51)GY	0	0	1		ENSG00000140650|ENST00000268261|PMM2;ENST00000567697.1_1_16:8904837-8941679:+|nuORF	ENSG00000140650|ENST00000268261|PMM2	ENSG00000140650|ENST00000268261|PMM2	MULTI-MSMS	A375_MHC_IP_R1	1	552.6451416015625	2	552.244949	1102.47534	-0.65034	-0.00035915	0.25575	0.00014123	-0.3946	-0.00021791	552.2450758677352	40.013	3.0463	40.013	39.187	42.233	0					129	59	3	0	0	0	0.095851	4	13595	13595;13831;13931;14068		51.415	15.288	1	5875700			15876	5174	11511	11599	15517;15518;15519;15520	15517		276			-0.07179370567814658
FTDPRTMGY	9	Oxidation (M)	_FTDPRTM(Oxidation (M))GY_		FTDPRTM(1)GY		FTDPRTM(100)GY	0	0	1		ENSG00000140650|ENST00000268261|PMM2;ENST00000567697.1_1_16:8904837-8941679:+|nuORF	ENSG00000140650|ENST00000268261|PMM2	ENSG00000140650|ENST00000268261|PMM2	MULTI-MSMS	A375_MHC_IP_R2	2	552.64453125	2	552.244949	1102.47534	-0.93744	-0.0005177	0.15525	8.5735E-05	-0.78219	-0.00043196	552.2450719500328	36.048	1.4753	36.811	36.081	37.556	0.76338					78	28	4	0	0	0	0.0092511	4	12924	12924;13005;13122;13181		103.42	59.561	1	41607000			15877	5174	11511	11599	15521;15522;15523;15524	15521		276			-0.07179370567814658
FTDPRTMGY	9	Oxidation (M)	_FTDPRTM(Oxidation (M))GY_		FTDPRTM(1)GY		FTDPRTM(64)GY	0	0	1		ENSG00000140650|ENST00000268261|PMM2;ENST00000567697.1_1_16:8904837-8941679:+|nuORF	ENSG00000140650|ENST00000268261|PMM2	ENSG00000140650|ENST00000268261|PMM2	MULTI-MSMS	A375_MHC_IP_R2	2	552.6441040039062	2	552.244949	1102.47534	-0.87133	-0.00048119	0.24019	0.00013264	-0.63114	-0.00034854	552.2449941107516	39.714	2.7436	40.488	39.556	42.3	0.77451					96	53	2	0	0	0	0.050868	2	14834	14834;15086		63.961	20.102	1	5422100			15878	5174	11511	11599	15525;15526	15525		276			-0.07179370567814658
FTDPRTMGY	9	Unmodified	_FTDPRTMGY_					0	0	0		ENSG00000140650|ENST00000268261|PMM2;ENST00000567697.1_1_16:8904837-8941679:+|nuORF	ENSG00000140650|ENST00000268261|PMM2	ENSG00000140650|ENST00000268261|PMM2	MULTI-MSMS	A375_MHC_IP_R1	1	544.6472778320312	2	544.247492	1086.48043	-0.66457	-0.00036169	0.19914	0.00010838	-0.46543	-0.00025331	544.2476642002488	53.18	1.1668	53.18	52.796	53.962	0					57	22	4	0	0	0	0.17338	3	18880	18880;18887;18952		39.95	14.55	1	35284000			15879	5174	11511	11600	15527;15528;15529	15527					-0.05935066705205827
FTDPRTMGY	9	Unmodified	_FTDPRTMGY_					0	0	0		ENSG00000140650|ENST00000268261|PMM2;ENST00000567697.1_1_16:8904837-8941679:+|nuORF	ENSG00000140650|ENST00000268261|PMM2	ENSG00000140650|ENST00000268261|PMM2	MULTI-MSMS	A375_MHC_IP_R2	2	544.2186889648438	2	544.247492	1086.48043	-1.2872	-0.00070053	0.69696	0.00037932	-0.59019	-0.00032121	544.2478564638249	52.701	1.6247	53.453	52.881	54.506	0.75126					66	31	5	0	0	0	0.04093	2	19831	19759;19831		67.838	27.881	1	32627000			15880	5174	11511	11600	15530;15531	15531					-0.05935066705205827
FTDQQKLIY	9	Unmodified	_FTDQQKLIY_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;MYO1B|p.L1009Pfs*6|1|0.14|ENSG00000128641|chr2:191414529-191414530|-/T|frameshift_variant;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-SECPEP	A375_MHC_IP_R2	2	578.7050170898438	2	578.305864	1154.59717	-0.59877	-0.00034627	-1.4357	-0.00083026	-2.0344	-0.0011765	578.3047727034802	54.003	0.66465	54.754	54.353	55.018	0.75105					29	12	3	0	0	0	0.033115	1	20384	20384		117.76	49.68	1	6892600			15881	14591	11512	11601	15532	15532					0.026059947862222543
FTDQRQYF	8	Unmodified	_FTDQRQYF_					0	0	0			REV__nc|ENSG00000135655|Q9Y4E8-2|USP15	REV__nc|ENSG00000135655|Q9Y4E8-2|USP15	MSMS	A375_MHC_IP_R2	2	552.7138671875	2	552.759081	1103.50361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.349	1	53.101	52.601	53.601	0.75225								0	0	0	0.16876	1	19731	19731		12.532	3.9383	1		+		15882	18873	11513	11602	15533	15533					-0.04400304596242677
FTDRATLY	8	Unmodified	_FTDRATLY_					0	0	0		GEMIN5|p.L1343Efs*7|1|0.2|ENSG00000082516|chr5:154891475-154891476|AA/-|frameshift_variant;ENSG00000082516|ENST00000285873|GEMIN5	GEMIN5|p.L1343Efs*7|1|0.2|ENSG00000082516|chr5:154891475-154891476|AA/-|frameshift_variant	GEMIN5|p.L1343Efs*7|1|0.2|ENSG00000082516|chr5:154891475-154891476|AA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1503601074219	2	493.750724	985.486896	-0.37704	-0.00018616	-0.44441	-0.00021943	-0.82145	-0.00040559	493.75050486585917	44.104	0.65782	44.873	44.682	45.34	0.76909					16	12	2	0	0	0	0.82487	1	16473	16473		41.956	11.319	1	3507600			15883	1763	11514	11603	15534	15534					-0.00642805482186759
FTDSLVNFVI	10	Unmodified	_FTDSLVNFVI_					0	0	0			REV__ENSG00000143630|ENST00000368358|HCN3	REV__ENSG00000143630|ENST00000368358|HCN3	MULTI-SECPEP	A375_MHC_IP_R1	1	385.2733154296875	3	385.541252	1153.60193	0.61558	0.00023733	1.4102	0.00054369	2.0258	0.00078102	385.5418824095153	22.196	0.20393	22.196	22.113	22.317	0					5	3	2	0	0	0	0.85226	1	5936	5936		8.9762	2.7844	1	1662500	+		15884	19376	11515	11604	15535	15535					0.03126878928969745
FTDTFSYHL	9	Unmodified	_FTDTFSYHL_					0	0	0		nc|ENSG00000154258|Q8IUA7-4|ABCA9;nc|ENSG00000154258|Q8IUA7-3|ABCA9;ENSG00000154258|ENST00000340001|ABCA9;nc|ENSG00000154258|Q8IUA7-2|ABCA9;nc|ENSG00000154258|Q8IUA7-5|ABCA9;ENST00000461623.1_1_17:67029858-67045457:-|nuORF	nc|ENSG00000154258|Q8IUA7-4|ABCA9	nc|ENSG00000154258|Q8IUA7-4|ABCA9	MULTI-SECPEP	A375_MHC_IP_R1	1	566.1607666015625	2	565.761289	1129.50803	-0.40753	-0.00023056	2.0034	0.0011334	1.5959	0.00090288	565.7613084649829	75.747	0.55272	75.747	75.514	76.067	0					35	10	4	0	0	0	0.24479	1	27581	27581		50.855	0.92203	1	11837000			15885	6075	11516	11605	15536	15536					-0.051548401733498395
FTDTGAYWR	9	Unmodified	_FTDTGAYWR_					0	0	0		ENST00000582678.5_1_17:61557143-61562826:+|nuORF;nc|ENSG00000159640|P12821-2|ACE;ENSG00000159640|ENST00000290866|ACE	ENST00000582678.5_1_17:61557143-61562826:+|nuORF	ENST00000582678.5_1_17:61557143-61562826:+|nuORF	MSMS	A375_MHC_IP_R2	2	558.6617431640625	2	558.759081	1115.50361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.353	1	76.093	75.593	76.593	0.74052								0	0	0	0.15069	1	28603	28603		20.454	2.3073	1				15886	6381	11517	11606	15537	15537					-0.049523045962587275
FTDVNSILRY	10	Unmodified	_FTDVNSILRY_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-SECPEP	A375_MHC_IP_R1	1	614.72119140625	2	614.322045	1226.62954	-0.28443	-0.00017473	-0.33837	-0.00020787	-0.6228	-0.0003826	614.3220126482123	88.18	1.3238	88.18	87.696	89.019	0					75	25	6	0	0	0	0.00023901	1	32311	32311		236.66	183.26	1	63952000			15887	4801	11518	11607	15538	15538					0.025287821891879503
FTDVNSILRY	10	Unmodified	_FTDVNSILRY_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-SECPEP	A375_MHC_IP_R2	2	614.7213134765625	2	614.322045	1226.62954	-0.49133	-0.00030183	-0.078642	-4.8311E-05	-0.56997	-0.00035014	614.3219361898028	87.51	1.3166	88.242	87.862	89.178	0.7318					60	25	4	0	0	0	0.65002	1	33456	33456		55.235	31.445	1	63627000			15888	4801	11518	11607	15539	15539					0.025287821891879503
FTDVPSIQIY	10	Unmodified	_FTDVPSIQIY_					0	0	0		nc|ENSG00000163539|O75122|CLASP2;ENSG00000163539|ENST00000682230|CLASP2;nc|ENSG00000163539|O75122-3|CLASP2;nc|ENSG00000163539|O75122-2|CLASP2	nc|ENSG00000163539|O75122|CLASP2	nc|ENSG00000163539|O75122|CLASP2	MULTI-SECPEP	A375_MHC_IP_R1	1	591.0867919921875	2	591.805697	1181.59684	0.0012609	7.4623E-07	-0.85783	-0.00050767	-0.85657	-0.00050692	591.805182389577	116.11	0.50865	116.11	115.73	116.24	0					15	9	2	0	0	0	0.89369	1	42524	42524		29.841	15.259	1	3278100			15889	6681	11519	11608	15540	15540					0.013305750663676008
FTDVPSIQIY	10	Unmodified	_FTDVPSIQIY_					0	0	0		nc|ENSG00000163539|O75122|CLASP2;ENSG00000163539|ENST00000682230|CLASP2;nc|ENSG00000163539|O75122-3|CLASP2;nc|ENSG00000163539|O75122-2|CLASP2	nc|ENSG00000163539|O75122|CLASP2	nc|ENSG00000163539|O75122|CLASP2	MULTI-SECPEP	A375_MHC_IP_R2	2	592.2037963867188	2	591.805697	1181.59684	-0.38237	-0.00022629	-1.47	-0.00086994	-1.8523	-0.0010962	592.3062897907419	115.37	0.45668	116.06	115.78	116.24	0.68999					14	8	2	0	0	0	0.91516	1	43539	43539		15.248	4.4246	1	3381800			15890	6681	11519	11608	15541	15541					0.013305750663676008
FTEDALGLRY	10	Unmodified	_FTEDALGLRY_					0	0	0		ENSG00000198780|ENST00000687041|FAM169A	ENSG00000198780|ENST00000687041|FAM169A	ENSG00000198780|ENST00000687041|FAM169A	MULTI-SECPEP	A375_MHC_IP_R1	1	593.2012939453125	2	592.800946	1183.58734	-0.19481	-0.00011548	-1.1907	-0.00070588	-1.3856	-0.00082136	592.8008678429237	78.616	0.55483	78.616	78.201	78.756	0					15	10	2	0	0	0	0.75488	1	28691	28691		23.79	19.845	1	1481300			15891	9322	11520	11609	15542	15542					0.0028880678080440703
FTEDALGLRY	10	Unmodified	_FTEDALGLRY_					0	0	0		ENSG00000198780|ENST00000687041|FAM169A	ENSG00000198780|ENST00000687041|FAM169A	ENSG00000198780|ENST00000687041|FAM169A	MULTI-SECPEP	A375_MHC_IP_R2	2	593.2010498046875	2	592.800946	1183.58734	-0.57582	-0.00034135	0.12489	7.4036E-05	-0.45093	-0.00026731	593.3024971758698	77.657	0.40808	78.4	78.216	78.624	0.74293					13	7	2	0	0	0	0.27758	1	29540	29540		45.74	15.103	1	2407500			15892	9322	11520	11609	15543	15543					0.0028880678080440703
FTEEDVKFY	9	Unmodified	_FTEEDVKFY_					0	0	0		nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;nc|ENSG00000117676|Q15418-3|RPS6KA1;nc|ENSG00000072133|Q9UK32-2|RPS6KA6;ENSG00000072133|ENST00000262752|RPS6KA6;ENST00000474934.1_1_1:26877949-26879989:+|nuORF;ENST00000527264.5_1_1:26873736-26880810:+|nuORF;ENSG00000071242|ENST00000265678|RPS6KA2;nc|ENSG00000071242|Q15349-3|RPS6KA2;nc|ENSG00000071242|Q15349-2|RPS6KA2;ENSG00000177189|ENST00000379565|RPS6KA3	nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000177189|ENST00000379565|RPS6KA3	nc|ENSG00000117676|Q15418-4|RPS6KA1	MULTI-MSMS	A375_MHC_IP_R1	1	589.6740112304688	2	589.274229	1176.53391	-0.21866	-0.00012885	-0.12808	-7.5475E-05	-0.34674	-0.00020433	589.2742395482248	70.447	0.56309	70.447	70.185	70.749	0					20	10	3	0	0	0	0.0023519	1	25611	25611		140.63	81.954	1	4656800			15893	3506;8067	11521	11610	15544	15544					-0.04729990721716604
FTEEDVKFY	9	Unmodified	_FTEEDVKFY_					0	0	0		nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;nc|ENSG00000117676|Q15418-3|RPS6KA1;nc|ENSG00000072133|Q9UK32-2|RPS6KA6;ENSG00000072133|ENST00000262752|RPS6KA6;ENST00000474934.1_1_1:26877949-26879989:+|nuORF;ENST00000527264.5_1_1:26873736-26880810:+|nuORF;ENSG00000071242|ENST00000265678|RPS6KA2;nc|ENSG00000071242|Q15349-3|RPS6KA2;nc|ENSG00000071242|Q15349-2|RPS6KA2;ENSG00000177189|ENST00000379565|RPS6KA3	nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000177189|ENST00000379565|RPS6KA3	nc|ENSG00000117676|Q15418-4|RPS6KA1	MULTI-MSMS	A375_MHC_IP_R2	2	590.175048828125	2	589.274229	1176.53391	-0.49579	-0.00029216	0.44089	0.00025981	-0.054904	-3.2354E-05	589.2743611466775	69.924	0.50848	70.658	70.386	70.895	0.73421					22	9	3	0	0	0	0.0099679	2	26502	26502;26571		121.53	77.676	1	4597600			15894	3506;8067	11521	11610	15545;15546	15545					-0.04729990721716604
FTEEQAVLY	9	Unmodified	_FTEEQAVLY_					0	0	0		nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-4|SRP68;SRP68|p.L315*|1|0.27|ENSG00000167881|chr17:76057437-76057437|A/-|frameshift_variant	nc|ENSG00000167881|Q9UHB9-2|SRP68	nc|ENSG00000167881|Q9UHB9-2|SRP68	MULTI-SECPEP	A375_MHC_IP_R2	2	550.616943359375	2	550.268947	1098.52334	-0.69392	-0.00038184	0.15603	8.5856E-05	-0.53789	-0.00029599	550.2689734645447	78.975	0.7109	79.72	79.438	80.149	0.74474					45	13	4	0	0	0	0.23313	1	29910	29910		45.7	0	1	44899000			15895	7233	11522	11611	15547	15547					-0.021979733761327225
FTEGCHSDD	9	Unmodified	_FTEGCHSDD_					0	0	0			REV__nc|ENSG00000198429|Q9UC07-2|ZNF69	REV__nc|ENSG00000198429|Q9UC07-2|ZNF69	MSMS	A375_MHC_IP_R1	1	505.6690673828125	2	505.679639	1009.34472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.826	1	47.826	47.326	48.326	0								0	0	0	0.15486	1	16840	16840		4.756	1.7608	1		+		15896	21055	11523	11612	15548	15548					-0.15957386286686415
FTEHEVQIY	9	Unmodified	_FTEHEVQIY_					0	0	0		nc|ENSG00000100784|O75582-2|RPS6KA5;ENSG00000100784|ENST00000614987|RPS6KA5;nc|ENSG00000100784|O75582-3|RPS6KA5	nc|ENSG00000100784|O75582-2|RPS6KA5	nc|ENSG00000100784|O75582-2|RPS6KA5	MULTI-SECPEP	A375_MHC_IP_R1	1	583.6804809570312	2	583.279846	1164.54514	-0.045243	-2.6389E-05	2.6425	0.0015413	2.5973	0.0015149	583.2816448499916	54.145	0.655	54.145	53.912	54.567	0					24	12	3	0	0	0	0.20059	1	19321	19321		39.95	0	1	2184200			15897	2218	11524	11613	15549	15549					-0.030551686275430257
FTEKGNLEV	9	Unmodified	_FTEKGNLEV_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000173898|O15020-2|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1687622070312	2	518.769114	1035.52368	-0.6957	-0.00036091	0.075073	3.8946E-05	-0.62063	-0.00032196	518.7691516970334	39.937	0.61019	39.937	39.694	40.304	0					21	11	3	0	0	0	0.070665	1	13688	13688		69.105	12.928	1	11500000			15898	3298;7838	11525	11614	15550	15550					0.007334463437246086
FTEKGNLEV	9	Unmodified	_FTEKGNLEV_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000173898|O15020-2|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1686401367188	2	518.769114	1035.52368	-0.84957	-0.00044073	-0.3743	-0.00019418	-1.2239	-0.00063491	518.768949065304	39.12	0.51093	39.895	39.708	40.219	0.77451					25	9	4	0	0	0	0.0575	1	14436	14436		76.825	20.648	1	11104000			15899	3298;7838	11525	11614	15551	15551					0.007334463437246086
FTEKPFDSQ	9	Unmodified	_FTEKPFDSQ_					0	0	0			REV__nc|ENSG00000108406|Q8IX18-4|DHX40	REV__nc|ENSG00000108406|Q8IX18-4|DHX40	MULTI-MSMS	A375_MHC_IP_R2	2	549.7081909179688	2	549.758746	1097.50294	-0.60845	-0.0003345	-0.022621	-1.2436E-05	-0.63107	-0.00034694	549.7587111509108	85.813	0.96602	86.549	86.137	87.103	0.73601					30	18	2	0	0	0	0.65721	1	32780	32780		10.824	1.4408	1	15532000	+		15900	17530	11526	11615	15552	15552					-0.041911440359626795
FTEKPRTFLY	10	Unmodified	_FTEKPRTFLY_					0	0	0		ENST00000369483.5_1_1:117209256-117209388:-|nuORF	ENST00000369483.5_1_1:117209256-117209388:-|nuORF	ENST00000369483.5_1_1:117209256-117209388:-|nuORF	MSMS	A375_MHC_IP_R2	2	434.6684265136719	3	434.567801	1300.68157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.866	1	51.62	51.12	52.12	0.75406								0	0	0	0.15411	1	19135	19135		7.4771	0.43998	1				15901	11132	11527	11616	15553	15553					0.04325945602954562
FTEMEWSY	8	Unmodified	_FTEMEWSY_					0	0	0		tr|U7SL96|U7SL96_FUSNUUndecaprenyl-diphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uppPPE=3SV=1	tr|U7SL96|U7SL96_FUSNUUndecaprenyl-diphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uppPPE=3SV=1	tr|U7SL96|U7SL96_FUSNUUndecaprenyl-diphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uppPPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	547.1694946289062	2	546.720775	1091.427	-0.8339	-0.00045591	-0.38703	-0.0002116	-1.2209	-0.00066751	546.7202316858162	67.288	1.0743	67.288	66.529	67.603	0					24	20	2	0	0	0	0.75322	2	24299	24299;24346		19.439	0.18201	1	2597000			15902	29497	11528	11617	15554;15555	15554					-0.11505864207742889
FTEMEWSY	8	Unmodified	_FTEMEWSY_					0	0	0		tr|U7SL96|U7SL96_FUSNUUndecaprenyl-diphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uppPPE=3SV=1	tr|U7SL96|U7SL96_FUSNUUndecaprenyl-diphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uppPPE=3SV=1	tr|U7SL96|U7SL96_FUSNUUndecaprenyl-diphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uppPPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	547.1201171875	2	546.720775	1091.427	-0.90109	-0.00049265	0.25906	0.00014163	-0.64204	-0.00035102	546.7207566448835	66.586	0.8163	67.323	66.831	67.648	0.73631					20	15	2	0	0	0	0.75322	1	25230	25230		19.439	2.4967	1	2241600			15903	29497	11528	11617	15556	15556					-0.11505864207742889
FTEMEWSY	8	Unmodified	_FTEMEWSY_					0	0	0		tr|U7SL96|U7SL96_FUSNUUndecaprenyl-diphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uppPPE=3SV=1	tr|U7SL96|U7SL96_FUSNUUndecaprenyl-diphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uppPPE=3SV=1	tr|U7SL96|U7SL96_FUSNUUndecaprenyl-diphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uppPPE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	546.720775	1091.427	-0.90109	-0.00049265	0.25906	0.00014163	-0.64204	-0.00035102	546.7207566448835	66.586	0.8163	67.323	66.831	67.648	0.73631	0.017256	0.00025827	NaN	19.439	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2241600			15904	29497	11528	11617							-0.11505864207742889
FTEMLQLHC	9	Unmodified	_FTEMLQLHC_					0	0	0			REV__ENSG00000203730|ENST00000367565|TEDDM1	REV__ENSG00000203730|ENST00000367565|TEDDM1	MULTI-SECPEP	A375_MHC_IP_R1	1	561.659912109375	2	561.259545	1120.50454	-0.46291	-0.00025981	0.6083	0.00034141	0.14539	8.1599E-05	561.2599590117766	79.706	0.66779	79.706	79.418	80.086	0					26	12	3	0	0	0	0.50484	1	29069	29069		37.974	37.974	1	3867100	+		15905	22468	11529	11618	15557	15557					-0.05089549543185967
FTENDKEYQEY	11	Unmodified	_FTENDKEYQEY_					0	0	0		ENSG00000235272|ENST00000444122|RAMACL;ENSG00000169612|ENST00000304191|RAMAC	ENSG00000235272|ENST00000444122|RAMACL	ENSG00000235272|ENST00000444122|RAMACL	MULTI-MSMS	A375_MHC_IP_R1	1	733.708984375	2	733.309529	1464.6045	-0.33979	-0.00024917	-0.37099	-0.00027205	-0.71079	-0.00052123	733.3092964202862	35.803	0.91727	35.803	35.472	36.389	0					47	17	5	0	0	0	4.6606E-35	1	11891	11891		251.2	219.94	1	60228000			15906	7423	11530	11619	15558	15558					-0.10921362194676476
FTENDKEYQEY	11	Unmodified	_FTENDKEYQEY_					0	0	0		ENSG00000235272|ENST00000444122|RAMACL;ENSG00000169612|ENST00000304191|RAMAC	ENSG00000235272|ENST00000444122|RAMACL	ENSG00000235272|ENST00000444122|RAMACL	MULTI-MSMS	A375_MHC_IP_R2	2	733.708740234375	2	733.309529	1464.6045	-1.0489	-0.00076918	0.4843	0.00035514	-0.56462	-0.00041404	733.3098636429207	35.192	0.75774	35.956	35.677	36.435	0.76338					44	14	5	0	0	0	1.4609E-26	1	12708	12708		227.14	195.87	1	55678000			15907	7423	11530	11619	15559	15559					-0.10921362194676476
FTEPNEISQY	10	Unmodified	_FTEPNEISQY_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	A375_MHC_IP_R1	1	614.6793823242188	2	614.280043	1226.54553	-0.73053	-0.00044875	0.039942	2.4535E-05	-0.69059	-0.00042421	614.2804919352328	67.898	0.86137	67.898	67.5	68.361	0					47	16	5	0	0	0	0.011374	1	24562	24562		121.5	69.235	1	13489000			15908	5349	11531	11620	15560	15560					-0.05867793698348578
FTEPNEISQY	10	Unmodified	_FTEPNEISQY_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	A375_MHC_IP_R2	2	614.6795043945312	2	614.280043	1226.54553	-0.59493	-0.00036545	-0.61614	-0.00037848	-1.2111	-0.00074394	614.280113971293	67.343	0.76213	68.08	67.698	68.461	0.73631					49	14	5	0	0	0	0.011522	1	25457	25457		117.84	79.662	1	16748000			15909	5349	11531	11620	15561	15561					-0.05867793698348578
FTEPNRHFY	9	Unmodified	_FTEPNRHFY_					0	0	0		ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	MULTI-SECPEP	A375_MHC_IP_R1	1	404.9273986816406	3	404.192845	1209.55671	-0.41627	-0.00016825	0.25512	0.00010312	-0.16115	-6.5135E-05	404.1930449900834	34.854	0.45898	34.854	34.708	35.167	0					23	8	4	0	0	0	0.30133	1	11535	11535		51.415	37.01	1	14535000			15910	6945	11532	11621	15562	15562					-0.039689268135816747
FTEPNRHFY	9	Unmodified	_FTEPNRHFY_					0	0	0		ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	MULTI-SECPEP	A375_MHC_IP_R2	2	404.6238098144531	3	404.192845	1209.55671	-0.35673	-0.00014419	-0.35498	-0.00014348	-0.7117	-0.00028767	404.19278260880486	34.158	0.66171	34.911	34.6	35.262	0.75225					28	12	3	0	0	0	0.46121	1	12240	12240		26.021	16.477	1	13597000			15911	6945	11532	11621	15563	15563					-0.039689268135816747
FTEQLILDGST	11	Unmodified	_FTEQLILDGST_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-SECPEP	A375_MHC_IP_R1	1	612.1971435546875	2	612.311343	1222.60813	-0.18887	-0.00011565	-0.204	-0.00012491	-0.39287	-0.00024056	612.3112023335443	47.693	0.30206	47.693	47.618	47.92	0					9	5	2	0	0	0	0.92455	1	16787	16787		16.149	3.1066	1	1493800			15912	4296	11533	11622	15564	15564					0.005733523697927012
FTEQPETYY	9	Unmodified	_FTEQPETYY_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	A375_MHC_IP_R1	1	589.6558837890625	2	589.256037	1176.49752	-0.34435	-0.00020291	0.20926	0.00012331	-0.13509	-7.9601E-05	589.2561022497108	61.407	0.35859	61.407	61.176	61.534	0					14	6	3	0	0	0	0.015701	1	22130	22130		88.954	48.715	1	2366500			15913	6889	11534	11623	15565	15565					-0.08366867618428842
FTEQPETYY	9	Unmodified	_FTEQPETYY_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MATCH	A375_MHC_IP_R2	2		2	589.256037	1176.49752	-0.86388	-0.00050905	0.50715	0.00029884	-0.35673	-0.00021021	589.2563795926422	60.86	0.50694	61.605	61.211	61.718	0.74503	0.099053	0.00017658	NaN	88.954	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1939900			15914	6889	11534	11623							-0.08366867618428842
FTEQWTDGY	9	Unmodified	_FTEQWTDGY_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	MULTI-SECPEP	A375_MHC_IP_R1	1	574.1804809570312	2	573.740554	1145.46655	-0.34629	-0.00019868	0.2159	0.00012387	-0.13038	-7.4807E-05	573.7405495225443	80.917	1.1657	80.917	80.441	81.607	0					60	22	4	0	0	0	0.008833	1	29592	29592		160.52	116.11	1	19041000			15915	5645	11535	11624	15566	15566					-0.10036020932670908
FTEQWTDGY	9	Unmodified	_FTEQWTDGY_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	MULTI-MSMS	A375_MHC_IP_R2	2	574.19482421875	2	573.740554	1145.46655	-0.25288	-0.00014509	-0.0048827	-2.8014E-06	-0.25776	-0.00014789	573.7404160947837	80.392	1.0674	81.137	80.708	81.776	0.74474					53	20	4	0	0	0	0.0070829	1	30523	30523		131.27	101.04	1	19062000			15916	5645	11535	11624	15567	15567					-0.10036020932670908
FTEQYNEQY	9	Unmodified	_FTEQYNEQY_					0	0	0		ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	MULTI-MSMS	A375_MHC_IP_R1	1	611.6561889648438	2	611.256568	1220.49858	-0.17558	-0.00010732	0.3717	0.0002272	0.19612	0.00011988	611.2566332252501	47.732	1.0598	47.732	47.416	48.476	0					70	20	5	0	0	0	0.047602	3	16970	16849;16920;16970		65.235	42.499	1	74753000			15917	7840	11536	11625	15568;15569;15570	15570					-0.10284653249505027
FTEQYNEQY	9	Unmodified	_FTEQYNEQY_					0	0	0		ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	MULTI-MSMS	A375_MHC_IP_R2	2	612.1965942382812	2	611.256568	1220.49858	-0.32886	-0.00020102	0.25151	0.00015374	-0.077352	-4.7282E-05	611.2565801945535	47.236	1.32	47.997	47.613	48.933	0.76127					77	25	5	0	0	0	0.004184	4	17707	17707;17745;17886;17897		160.52	160.52	1	101120000			15918	7840	11536	11625	15571;15572;15573;15574	15571					-0.10284653249505027
FTERFHFY	8	Unmodified	_FTERFHFY_					0	0	0		ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-SECPEP	A375_MHC_IP_R1	1	382.2995300292969	3	382.85042	1145.52943	0.4981	0.0001907	-0.90599	-0.00034686	-0.40789	-0.00015616	382.8500071783365	21.031	0.76492	21.031	20.536	21.301	0					23	14	2	0	0	0	0.972	1	5290	5290		7.2892	7.2892	1	1023800			15919	3498	11537	11626	15575	15575					-0.03751410353947904
FTERFHFY	8	Unmodified	_FTERFHFY_					0	0	0		ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-MSMS	A375_MHC_IP_R2	2	1147.60205078125	1	1146.53671	1145.52943	0.33265	0.00038139	-1.455	-0.0016682	-1.1223	-0.0012868	1146.5350865270193	111.65	0.5629	112.38	112.1	112.66	0.72458					22	10	3	0	0	0	0.75805	1	42003	42003		18.135	1.0221	1	6764200			15920	3498	11537	11626	15576	15576					-0.03751410353947904
FTERFHFY	8	Unmodified	_FTERFHFY_					0	0	0		ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-MATCH	A375_MHC_IP_R1	1		1	1146.53671	1145.52943	0.33595	0.00038518	-0.79863	-0.00091566	-0.46268	-0.00053048	1146.535598061914	112.32	0.61037	112.32	112.03	112.64	0	-0.029344	0.00032641	NaN	18.135	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6205100			15921	3498	11537	11626							-0.03751410353947904
FTERFHFY	8	Unmodified	_FTERFHFY_					0	0	0		ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	1146.53671	1145.52943	0.33265	0.00038139	-1.455	-0.0016682	-1.1223	-0.0012868	1146.5350865270193	111.65	0.5629	112.38	112.1	112.66	0.72458	0.029344	-0.00042611	NaN	18.135	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6764200			15922	3498	11537	11626							-0.03751410353947904
FTERSKLIDHY	11	Unmodified	_FTERSKLIDHY_					0	0	0		nc|ENSG00000181220|Q6NUN9-3|ZNF746;nc|ENSG00000181220|Q6NUN9|ZNF746;nc|ENSG00000181220|Q6NUN9-2|ZNF746;ENSG00000181220|ENST00000458143|ZNF746	nc|ENSG00000181220|Q6NUN9-3|ZNF746	nc|ENSG00000181220|Q6NUN9-3|ZNF746	MULTI-SECPEP	A375_MHC_IP_R2	2	469.6523742675781	3	470.245498	1407.71466	-0.96659	-0.00045453	0.1311	6.165E-05	-0.83549	-0.00039288	470.5797767404071	29.883	0.35506	30.581	30.434	30.79	0.69872					12	6	3	0	0	0	0.97636	1	10497	10497		15.538	1.3203	1	1854500			15923	8338	11538	11627	15577	15577					0.027115276549920964
FTESGLVGLLE	11	Unmodified	_FTESGLVGLLE_					0	0	0		nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;ENST00000479983.1_1_1:62958359-62960107:-|nuORF;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7	nc|ENSG00000107099|Q8NF50-2|DOCK8;nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000107099|Q8NF50-2|DOCK8	MULTI-SECPEP	A375_MHC_IP_R1	1	583.1641845703125	2	582.810979	1163.6074	-0.25585	-0.00014911	0.68141	0.00039713	0.42555	0.00024802	582.8112563425242	75.87	0.60354	75.87	75.514	76.117	0					23	11	3	0	0	0	0.95991	1	27584	27584		13.042	0	1	4381300			15924	2724;3411	11539	11628	15578	15578					0.032145577207757015
FTESGLVGLLE	11	Unmodified	_FTESGLVGLLE_					0	0	0		nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;ENST00000479983.1_1_1:62958359-62960107:-|nuORF;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7	nc|ENSG00000107099|Q8NF50-2|DOCK8;nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000107099|Q8NF50-2|DOCK8	MULTI-SECPEP	A375_MHC_IP_R2	2	583.2110595703125	2	582.810979	1163.6074	-0.4445	-0.00025906	0.91962	0.00053596	0.47512	0.00027691	582.8115052545553	75.072	0.40297	75.81	75.57	75.973	0.73751					14	7	2	0	0	0	0.9754	1	28458	28458		12.241	0	1	3865000			15925	2724;3411	11539	11628	15579	15579					0.032145577207757015
FTESVGSLYIS	11	Unmodified	_FTESVGSLYIS_					0	0	0			REV__nc|ENSG00000005189|Q96IC2-2|REXO5	REV__nc|ENSG00000005189|Q96IC2-2|REXO5	MULTI-MSMS	A375_MHC_IP_R1	1	602.2003173828125	2	601.800611	1201.58667	-0.19486	-0.00011727	0.37104	0.00022329	0.17618	0.00010602	601.8005762330137	51.735	0.45747	51.735	51.525	51.982	0					17	8	3	0	0	0	0.36362	1	18376	18376		41.84	5.7126	1	3000700	+		15926	16115	11540	11629	15580	15580					-0.006060326589022225
FTESVGSLYIS	11	Unmodified	_FTESVGSLYIS_					0	0	0			REV__nc|ENSG00000005189|Q96IC2-2|REXO5	REV__nc|ENSG00000005189|Q96IC2-2|REXO5	MULTI-MSMS	A375_MHC_IP_R2	2	602.2003784179688	2	601.800611	1201.58667	-0.58864	-0.00035424	0.028835	1.7353E-05	-0.5598	-0.00033689	601.8005289464364	51.035	0.45524	51.789	51.564	52.019	0.75406					13	8	2	0	0	0	0.36362	1	19213	19213		41.84	11.203	1	3814600	+		15927	16115	11540	11629	15581	15581					-0.006060326589022225
FTETMEFF	8	Unmodified	_FTETMEFF_					0	0	0			REV__ENSG00000197653|ENST00000673944|DNAH10	REV__ENSG00000197653|ENST00000673944|DNAH10	MSMS	A375_MHC_IP_R2	2	526.1945190429688	2	526.225694	1050.43683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.857	1	57.607	57.107	58.107	0.75015								0	0	0	0.16516	1	21493	21493		42.968	28.386	1		+		15928	22307	11541	11630	15582	15582					-0.08636676202354465
FTETPENGSKW	11	Unmodified	_FTETPENGSKW_					0	0	0		ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96	ENSG00000153283|ENST00000352690|CD96	ENSG00000153283|ENST00000352690|CD96	MSMS	A375_MHC_IP_R2	2	647.9351196289062	2	648.298767	1294.58298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.561	1	79.306	78.806	79.806	0.74474								0	0	0	0.16179	1	29833	29833		9.3831	2.0939	1				15929	6023	11542	11631	15583	15583					-0.05252702432744627
FTEVVKGKEW	10	Unmodified	_FTEVVKGKEW_					0	0	0		NPSR1|p.E37K|1|0.38|ENSG00000187258|chr7:34658521-34658521|G/A|missense_variant	NPSR1|p.E37K|1|0.38|ENSG00000187258|chr7:34658521-34658521|G/A|missense_variant	NPSR1|p.E37K|1|0.38|ENSG00000187258|chr7:34658521-34658521|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	611.6565551757812	2	611.826963	1221.63937	-0.32496	-0.00019882	-0.060775	-3.7184E-05	-0.38574	-0.00023601	611.8266667394116	47.219	0.45879	47.981	47.715	48.174	0.76128					13	8	2	0	0	0	0.78945	1	17643	17643		19.257	0	1	1852100			15930	15025	11543	11632	15584	15584					0.03741970194550959
FTFKHTRQF	9	Unmodified	_FTFKHTRQF_					0	0	0		ENST00000358738.3_1_14:64988292-64988349:+|nuORF	ENST00000358738.3_1_14:64988292-64988349:+|nuORF	ENST00000358738.3_1_14:64988292-64988349:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	404.9488220214844	3	404.548852	1210.62473	-0.64798	-0.00026214	0.047004	1.9016E-05	-0.60098	-0.00024312	404.548807479752	29.461	0.55616	30.159	30.032	30.588	0.69872					16	10	2	0	0	0	0.12591	1	10327	10327		46.022	20.025	1	3069800			15931	10999	11544	11633	15585	15585					0.027839428370498354
FTGCHDEV	8	Unmodified	_FTGCHDEV_					0	0	0			REV__nc|ENSG00000153246|Q13018-2|PLA2R1	REV__nc|ENSG00000153246|Q13018-2|PLA2R1	MSMS	A375_MHC_IP_R2	2	454.17364501953125	2	454.18436	906.354167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.261	1	82.006	81.506	82.506	0.74474								0	0	0	0.16876	1	30857	30857		5.7604	0	1		+		15932	19834	11545	11634	15586	15586					-0.10275573210503808
FTGETDIYMA	10	Unmodified	_FTGETDIYMA_					0	0	0			REV__nc|ENSG00000051180|Q06609-3|RAD51	REV__nc|ENSG00000051180|Q06609-3|RAD51	MULTI-SECPEP	A375_MHC_IP_R2	2	383.24053955078125	3	383.170719	1146.49033	0.038417	1.472E-05	0.80627	0.00030894	0.84469	0.00032366	383.1710300803288	43.489	1.2129	44.261	43.523	44.735	0.7724					41	23	3	0	0	0	0.92957	1	16341	16341		3.3196	2.4553	1	1829300	+		15933	16390	11546	11635	15587	15587					-0.0770592349049366
FTGWFENENCY	11	Unmodified	_FTGWFENENCY_					0	0	0			REV__BRINP1|p.G401E|1|0.31|ENSG00000078725|chr9:119168168-119168168|C/T|missense_variant	REV__BRINP1|p.G401E|1|0.31|ENSG00000078725|chr9:119168168-119168168|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	705.1953735351562	2	705.276977	1408.5394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.851	1	66.589	66.089	67.089	0.73811								0	0	0	0.1624	1	24969	24969		6.2058	0.47393	1		+		15934	15527	11547	11636	15588	15588					-0.14852635201509656
FTHLRRALL	9	Unmodified	_FTHLRRALL_					0	0	0			REV__nc|ENSG00000104044|Q04671-3|OCA2	REV__nc|ENSG00000104044|Q04671-3|OCA2	MULTI-SECPEP	A375_MHC_IP_R1	1	564.244873046875	2	563.845825	1125.6771	-0.57173	-0.00032237	-0.84077	-0.00047406	-1.4125	-0.00079643	563.8450881822765	91.253	0.40453	91.253	91.048	91.452	0					12	7	2	0	0	0	0.71071	1	33567	33567		14.838	0	1	1037400	+		15935	15708	11548	11637	15589	15589					0.11928525970688497
FTHMIHTEM	9	Unmodified	_FTHMIHTEM_					0	0	0			REV__ENST00000483155.5_1_9:79002317-79008728:-|nuORF	REV__ENST00000483155.5_1_9:79002317-79008728:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	383.24053955078125	3	382.840538	1145.49979	0.0928	3.5528E-05	0.078425	3.0024E-05	0.17123	6.5552E-05	382.84045315292656	43.724	0.40296	44.493	44.329	44.732	0.76909					9	7	2	0	0	0	0.77003	1	16341	16341		4.5289	0	1	2134900	+		15936	18817	11549	11638	15590	15590					-0.0671443368596556
FTHRGEGW	8	Unmodified	_FTHRGEGW_					0	0	0		ENST00000488821.1_1_2:232235419-232236686:+|nuORF	ENST00000488821.1_1_2:232235419-232236686:+|nuORF	ENST00000488821.1_1_2:232235419-232236686:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	989.47509765625	1	989.45879	988.451513	0.18815	0.00018616	0.75748	0.0007495	0.94563	0.00093566	989.4593719141018	52.262	1.5733	52.262	51.778	53.352	0					44	30	2	0	0	0	0.77643	1	18467	18467		7.9102	7.9102	1	3583400			15937	12625	11550	11639	15591	15591					-0.04317423219333705
FTHRGEGW	8	Unmodified	_FTHRGEGW_					0	0	0		ENST00000488821.1_1_2:232235419-232236686:+|nuORF	ENST00000488821.1_1_2:232235419-232236686:+|nuORF	ENST00000488821.1_1_2:232235419-232236686:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	989.45879	988.451513	-0.23471	-0.00023224	0.54033	0.00053463	0.30562	0.00030239	989.4595952174175	51.543	1.2704	52.296	51.813	53.083	0.75225	0.016963	-0.00013002	NaN	7.9102	36	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4043000			15938	12625	11550	11639							-0.04317423219333705
FTIRVTSE	8	Unmodified	_FTIRVTSE_					0	0	0		ENSG00000138035|ENST00000447944|PNPT1;ENST00000260604.8_1_2:55870335-55906871:-|nuORF	ENSG00000138035|ENST00000447944|PNPT1	ENSG00000138035|ENST00000447944|PNPT1	MSMS	A375_MHC_IP_R2	2	476.6737976074219	2	476.758549	951.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.458	1	50.215	49.715	50.715	0.75737								0	0	0	0.16876	1	18585	18585		10.074	0.6908	1				15939	4945	11551	11640	15592	15592					0.0248548103485291
FTKDCEPCPYP	11	Unmodified	_FTKDCEPCPYP_					0	0	0			REV__ENSG00000204947|ENST00000378061|ZNF425	REV__ENSG00000204947|ENST00000378061|ZNF425	MULTI-SECPEP	A375_MHC_IP_R1	1	434.2507629394531	3	433.850992	1298.53115	-0.17105	-7.4209E-05	0.24347	0.00010563	0.07242	3.1419E-05	433.8510342922449	31.44	0.35387	31.44	31.211	31.565	0					15	6	3	0	0	0	0.99661	1	10092	10092		1.6479	0.63431	1	3721000	+		15940	22550	11552	11641	15593	15593					-0.10617905442541087
FTKFRKIY	8	Unmodified	_FTKFRKIY_					0	0	0		ENSG00000157014|ENST00000448281|TATDN2	ENSG00000157014|ENST00000448281|TATDN2	ENSG00000157014|ENST00000448281|TATDN2	MULTI-SECPEP	A375_MHC_IP_R1	1	552.1510620117188	2	551.824027	1101.6335	-0.65146	-0.00035949	-3.8472	-0.002123	-4.4987	-0.0024825	551.8213256541965	41.953	0.25522	41.953	41.777	42.032	0					8	4	2	0	0	0	0.972	1	14530	14530		5.7604	1.4312	1	1237300			15941	6223	11553	11642	15594	15594					0.08674916473569283
FTKKTLSVIF	10	Unmodified	_FTKKTLSVIF_					0	0	0		tr|U7SQR4|U7SQR4_FUSNUGlycosyltransferaseRgtA/B/C/D-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01666PE=4SV=1	tr|U7SQR4|U7SQR4_FUSNUGlycosyltransferaseRgtA/B/C/D-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01666PE=4SV=1	tr|U7SQR4|U7SQR4_FUSNUGlycosyltransferaseRgtA/B/C/D-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01666PE=4SV=1	MSMS	A375_MHC_IP_R1	1	395.2643127441406	3	395.241025	1182.70125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.94	1	19.94	19.44	20.44	0								0	0	0	0.15522	1	5045	5045		3.8763	0.030424	1				15942	29592	11554	11643	15595	15595					0.11720321613688611
FTKNLFIYF	9	Unmodified	_FTKNLFIYF_					0	0	0			REV__ENSG00000175548|ENST00000308742|ALG10B	REV__ENSG00000175548|ENST00000308742|ALG10B	MULTI-SECPEP	A375_MHC_IP_R1	1	397.9231872558594	3	398.21822	1191.63283	-0.15448	-6.1517E-05	0.45644	0.00018176	0.30196	0.00012025	398.2182868946173	20.063	0.65944	20.063	19.725	20.384	0					24	12	3	0	0	0	0.77003	1	5094	5094		11.495	0	1	3303000	+		15943	21351	11555	11644	15596	15596					0.04468077033834561
FTKNWTEY	8	Unmodified	_FTKNWTEY_					0	0	0			REV__NLRP1|p.R726W|1|0.2|ENSG00000091592|chr17:5558520-5558520|G/A|missense_variant	REV__NLRP1|p.R726W|1|0.2|ENSG00000091592|chr17:5558520-5558520|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	545.1559448242188	2	544.756007	1087.49746	-0.42201	-0.00022989	0.39119	0.0002131	-0.030813	-1.6785E-05	544.7564278516214	51.87	0.86258	51.87	51.424	52.287	0					24	16	2	0	0	0	0.74945	1	18427	18427		20.454	5.6154	1	3009200	+		15944	27614	11556	11645	15597	15597					-0.04278822827768636
FTKNWTEY	8	Unmodified	_FTKNWTEY_					0	0	0			REV__NLRP1|p.R726W|1|0.2|ENSG00000091592|chr17:5558520-5558520|G/A|missense_variant	REV__NLRP1|p.R726W|1|0.2|ENSG00000091592|chr17:5558520-5558520|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	545.15576171875	2	544.756007	1087.49746	-0.93298	-0.00050825	0.15123	8.2383E-05	-0.78175	-0.00042586	544.7560947383979	51.098	0.96227	51.852	51.462	52.425	0.75406					22	18	2	0	0	0	0.76248	1	19247	19247		16.942	3.0362	1	2663400	+		15945	27614	11556	11645	15598	15598					-0.04278822827768636
FTKNWTEY	8	Unmodified	_FTKNWTEY_					0	0	0			REV__NLRP1|p.R726W|1|0.2|ENSG00000091592|chr17:5558520-5558520|G/A|missense_variant	REV__NLRP1|p.R726W|1|0.2|ENSG00000091592|chr17:5558520-5558520|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	544.756007	1087.49746	-0.42201	-0.00022989	0.39119	0.0002131	-0.030813	-1.6785E-05	544.7564278516214	51.87	0.86258	51.87	51.424	52.287	0	0.0089677	0.00013909	NaN	20.454	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3009200	+		15946	27614	11556	11645							-0.04278822827768636
FTKPPIGTW	9	Unmodified	_FTKPPIGTW_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;ENST00000471989.5_1_17:40475518-40477070:-|nuORF	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-SECPEP	A375_MHC_IP_R1	1	524.1865844726562	2	523.78711	1045.55967	-0.49355	-0.00025851	0.40341	0.0002113	-0.090142	-4.7215E-05	523.787076613998	73.893	0.70822	73.893	73.589	74.298	0					27	13	3	0	0	0	0.10362	1	26918	26918		72.968	50.232	1	2623200			15947	7325	11557	11646	15599	15599					0.038709483112370435
FTKPPIGTW	9	Unmodified	_FTKPPIGTW_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;ENST00000471989.5_1_17:40475518-40477070:-|nuORF	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-SECPEP	A375_MHC_IP_R2	2	524.186279296875	2	523.78711	1045.55967	-0.53013	-0.00027767	-0.41177	-0.00021568	-0.94189	-0.00049335	523.786834417415	73.091	0.81512	73.826	73.53	74.345	0.7354					22	15	2	0	0	0	0.0575	1	27748	27748		86.332	57.25	1	2970000			15948	7325	11557	11646	15600	15600					0.038709483112370435
FTLKLEVYST	10	Unmodified	_FTLKLEVYST_					0	0	0		UGT2B28|p.P78S|1|0.28|ENSG00000135226|chr4:69280732-69280732|C/T|missense_variant	UGT2B28|p.P78S|1|0.28|ENSG00000135226|chr4:69280732-69280732|C/T|missense_variant	UGT2B28|p.P78S|1|0.28|ENSG00000135226|chr4:69280732-69280732|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	400.2586364746094	3	400.88854	1199.64379	-0.4276	-0.00017142	-2.0362	-0.00081629	-2.4638	-0.00098771	401.22200513413276	47.057	0.15524	47.057	46.952	47.107	0					4	2	2	0	0	0	0.93194	1	16523	16523		3.0723	2.11	1	348180			15949	30114	11558	11647	15601	15601					0.05195434617462524
FTLKNYYKI	9	Unmodified	_FTLKNYYKI_					0	0	0		ENSG00000221909|ENST00000449309|FAM200A	ENSG00000221909|ENST00000449309|FAM200A	ENSG00000221909|ENST00000449309|FAM200A	MULTI-MSMS	A375_MHC_IP_R2	2	397.2912902832031	3	397.225375	1188.6543	-0.45142	-0.00017931	3.5761	0.0014205	3.1247	0.0012412	397.22633749982504	22.91	0.25493	23.54	23.368	23.623	0.63014					10	4	3	0	0	0	0.69317	1	7323	7323		7.609	1.4171	1	2676100			15950	9671	11559	11648	15602	15602					0.06751462062561586
FTLKPKKRR	9	Unmodified	_FTLKPKKRR_					0	0	0		ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	MULTI-SECPEP	A375_MHC_IP_R1	1	586.6925659179688	2	587.382574	1172.7506	-0.36615	-0.00021507	0.48161	0.00028289	0.11546	6.7817E-05	587.3825344527014	65.08	0.3024	65.08	64.954	65.257	0					7	5	2	0	0	0	0.78753	1	23561	23561		12.532	0.89125	1	577880			15951	9874	11560	11649	15603	15603					0.1711307441316876
FTLPFCHTV	9	Unmodified	_FTLPFCHTV_					0	0	0		nc|ENSG00000158731|Q8NGY7|OR10J6P	nc|ENSG00000158731|Q8NGY7|OR10J6P	nc|ENSG00000158731|Q8NGY7|OR10J6P	MULTI-SECPEP	A375_MHC_IP_R1	1	356.2695617675781	3	355.512639	1063.51609	-0.15777	-5.609E-05	1.8808	0.00066864	1.723	0.00061255	355.51309864543936	29.183	0.91226	29.183	28.491	29.403	0					23	17	2	0	0	0	0.62767	1	9196	9196		7.609	4.2893	1	1801400			15952	14701	11561	11650	15604	15604					-0.013129844575814786
FTLREVQERW	10	Unmodified	_FTLREVQERW_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	MULTI-MSMS	A375_MHC_IP_R2	2	455.6411437988281	3	455.242088	1362.70443	-0.21065	-9.5897E-05	-0.81343	-0.00037031	-1.0241	-0.00046621	455.24158347773823	67.334	0.50961	68.07	67.9	68.41	0.73631					17	9	3	0	0	0	0.42595	1	25530	25530		32.616	24.33	1	1792500			15953	8856	11562	11651	15605	15605					0.037589647204185894
FTLREVQERW	10	Unmodified	_FTLREVQERW_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	455.242088	1362.70443	-0.65426	-0.00029785	-0.042747	-1.946E-05	-0.697	-0.00031731	455.57664542650684	68.026	0.40482	68.026	67.804	68.209	0	-0.021944	0.00072891	NaN	32.616	17	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1176200			15954	8856	11562	11651							0.037589647204185894
FTLRPNAPHE	10	Unmodified	_FTLRPNAPHE_					0	0	0			REV__ENST00000553332.5_1_14:104177568-104181820:-|nuORF	REV__ENST00000553332.5_1_14:104177568-104181820:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	394.61163330078125	3	394.540245	1180.59891	-0.29885	-0.00011791	0.2299	9.0706E-05	-0.06895	-2.7204E-05	394.54019810287195	40.668	0.60976	41.443	41.031	41.641	0.77451					14	11	2	0	0	0	0.91556	1	14928	14928		8.9762	3.1928	1	1251400	+		15955	26062	11563	11652	15606	15606					0.01583048594829961
FTMEKGNRFF	10	Unmodified	_FTMEKGNRFF_					0	0	0		nc|ENSG00000134531|P54849-2|EMP1;ENSG00000134531|ENST00000256951|EMP1	nc|ENSG00000134531|P54849-2|EMP1	nc|ENSG00000134531|P54849-2|EMP1	MSMS	A375_MHC_IP_R1	1	426.1245422363281	3	426.209619	1275.60703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.933	1	25.933	25.433	26.433	0								0	0	0	0.14741	1	7649	7649		19.626	0.90473	1				15956	4584	11564	11653	15607	15607					-0.019751404800899763
FTMNAYTYDWK	11	Unmodified	_FTMNAYTYDWK_					0	0	0			REV__nc|ENSG00000142166|P17181-2|IFNAR1	REV__nc|ENSG00000142166|P17181-2|IFNAR1	MSMS	A375_MHC_IP_R2	2	480.4451599121094	3	480.548189	1438.62274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.749	1	24.379	23.879	24.879	0.63014								0	0	0	0.16307	1	7693	7693		1.1098	0.096179	1		+		15957	19295	11565	11654	15608	15608					-0.07902898753718546
FTNNYGAGP	9	Unmodified	_FTNNYGAGP_					0	0	0			REV__ENSG00000105088|ENST00000264833|OLFM2	REV__ENSG00000105088|ENST00000264833|OLFM2	MSMS	A375_MHC_IP_R1	1	470.676513671875	2	470.711599	939.408646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.139	1	32.139	31.639	32.639	0								0	0	0	0.15486	1	10356	10356		8.5933	2.2392	1		+		15958	17357	11566	11655	15609	15609					-0.06348238067425882
FTNPKVREW	9	Unmodified	_FTNPKVREW_					0	0	0		ENSG00000214013|ENST00000318010|GANC;ENST00000567421.1_1_15:42570725-42619667:+|nuORF;GANC|p.K707Rfs*54|1|0.26|ENSG00000214013|chr15:42340720-42340720|A/-|frameshift_variant	ENSG00000214013|ENST00000318010|GANC	ENSG00000214013|ENST00000318010|GANC	MULTI-SECPEP	A375_MHC_IP_R1	1	393.264892578125	3	392.876857	1175.60874	-0.1376	-5.4058E-05	0.077917	3.0612E-05	-0.059678	-2.3446E-05	392.8768956044715	36.44	0.45855	36.44	36.236	36.695	0					20	8	3	0	0	0	0.34544	1	12209	12209		49.742	33.176	1	5112100			15959	9597	11567	11656	15610	15610					0.027962366001929695
FTNPKVREW	9	Unmodified	_FTNPKVREW_					0	0	0		ENSG00000214013|ENST00000318010|GANC;ENST00000567421.1_1_15:42570725-42619667:+|nuORF;GANC|p.K707Rfs*54|1|0.26|ENSG00000214013|chr15:42340720-42340720|A/-|frameshift_variant	ENSG00000214013|ENST00000318010|GANC	ENSG00000214013|ENST00000318010|GANC	MULTI-MSMS	A375_MHC_IP_R2	2	393.26458740234375	3	392.876857	1175.60874	-0.38748	-0.00015223	-0.16717	-6.5679E-05	-0.55465	-0.00021791	392.87670719175196	35.595	0.91591	36.358	36.132	37.048	0.76338					32	17	4	0	0	0	0.26911	1	12965	12965		32.898	14.525	1	7925800			15960	9597	11567	11656	15611	15611					0.027962366001929695
FTNPRKTTF	9	Unmodified	_FTNPRKTTF_					0	0	0			REV__ENST00000430258.2_1_X:110867440-110867509:-|nuORF	REV__ENST00000430258.2_1_X:110867440-110867509:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	371.6014709472656	3	371.201341	1110.58219	0.39011	0.00014481	-0.36959	-0.00013719	0.020518	7.6165E-06	371.2012400964911	33.784	0.50516	33.784	33.496	34.001	0					27	9	4	0	0	0	0.65748	1	11029	11029		10.8	1.8233	1	10975000	+		15961	17396	11568	11657	15612	15612					0.031325477088330445
FTNTMRVVPVP	11	Unmodified	_FTNTMRVVPVP_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000565143.1_1_15:72491993-72493046:-|nuORF;nc|ENSG00000067225|P14618-2|PKM	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	A375_MHC_IP_R1	1	631.2420654296875	2	630.842091	1259.66963	-0.66015	-0.00041645	-0.11217	-7.0762E-05	-0.77232	-0.00048721	630.8420313309955	77.324	0.76044	77.324	76.878	77.639	0					30	14	3	0	0	0	0.4429	1	28189	28189		35.612	12.954	1	2091700			15962	1434	11569	11658	15613	15613					0.05018005588112828
FTNTMRVVPVP	11	Unmodified	_FTNTMRVVPVP_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000565143.1_1_15:72491993-72493046:-|nuORF;nc|ENSG00000067225|P14618-2|PKM	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	A375_MHC_IP_R2	2	631.241455078125	2	630.842091	1259.66963	-0.80186	-0.00050585	0.036015	2.272E-05	-0.76585	-0.00048313	630.8422125045919	76.392	0.76154	77.132	76.843	77.604	0.74052					23	14	2	0	0	0	0.16416	1	29011	29011		59.052	24.12	1	2080000			15963	1434	11569	11658	15614	15614					0.05018005588112828
FTPKLFFHL	9	Unmodified	_FTPKLFFHL_					0	0	0			REV__PCDHB14|p.P390H|1|0.64|ENSG00000120327|chr5:141224674-141224674|C/A|missense_variant	REV__PCDHB14|p.P390H|1|0.64|ENSG00000120327|chr5:141224674-141224674|C/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	383.9189453125	3	383.886694	1148.63825	0.16679	6.4028E-05	-0.46517	-0.00017857	-0.29838	-0.00011455	383.886489787315	39.55	2.1812	39.55	38.933	41.114	0					82	42	5	0	0	0	0.68216	1	14153	14153		5.2969	1.1074	1	52572000	+		15964	27734	11570	11659	15615	15615					0.06987800616320783
FTPNNIKQV	9	Unmodified	_FTPNNIKQV_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-SECPEP	A375_MHC_IP_R1	1	531.1519775390625	2	530.792924	1059.57129	-0.9799	-0.00052012	0.5906	0.00031349	-0.3893	-0.00020664	530.7932357325003	38.186	0.30371	38.186	38.016	38.319	0					8	5	2	0	0	0	0.59614	1	12930	12930		30.637	30.637	1	1381000			15965	2826	11571	11660	15616	15616					0.04389145334562272
FTPNNIKQV	9	Unmodified	_FTPNNIKQV_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MATCH	A375_MHC_IP_R2	2		2	530.792924	1059.57129	-1.0529	-0.00055889	0.041794	2.2184E-05	-1.0111	-0.00053671	530.793081639131	37.363	0.35815	38.134	38.02	38.378	0.7709	-0.025949	-0.00039421	NaN	24.021	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1620000			15966	2826	11571	11660							0.04389145334562272
FTPPIVKRL	9	Unmodified	_FTPPIVKRL_					0	0	0		ENSG00000166949|ENST00000327367|SMAD3	ENSG00000166949|ENST00000327367|SMAD3	ENSG00000166949|ENST00000327367|SMAD3	MULTI-MSMS	A375_MHC_IP_R1	1	357.9621276855469	3	357.56221	1069.6648	0.028645	1.0242E-05	-0.29241	-0.00010455	-0.26376	-9.4312E-05	357.561992471437	54.981	0.55777	54.981	54.67	55.228	0					20	10	3	0	0	0	0.69884	1	19691	19691		7.1017	7.1017	1	2235400			15967	7139	11572	11661	15617	15617					0.13275489507645943
FTPPIVKRL	9	Unmodified	_FTPPIVKRL_					0	0	0		ENSG00000166949|ENST00000327367|SMAD3	ENSG00000166949|ENST00000327367|SMAD3	ENSG00000166949|ENST00000327367|SMAD3	MULTI-MATCH	A375_MHC_IP_R2	2		3	357.56221	1069.6648	-0.60057	-0.00021474	-0.054624	-1.9532E-05	-0.6552	-0.00023427	357.5622535329968	53.913	0.46158	54.664	54.404	54.866	0.75105	-0.15847	9.2338E-05	NaN	7.1017	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1185700			15968	7139	11572	11661							0.13275489507645943
FTPSLAAEP	9	Unmodified	_FTPSLAAEP_					0	0	0			REV__ENST00000396522.6_1_14:21967741-21972178:-|nuORF	REV__ENST00000396522.6_1_14:21967741-21972178:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	932.8729248046875	1	932.472374	931.465098	-0.041363	-3.8569E-05	-0.47853	-0.00044621	-0.51989	-0.00048478	932.4717955935915	113.48	0.60996	114.19	113.92	114.53	0.70985					18	11	2	0	0	0	0.39388	1	42781	42781		32.305	5.4218	1	4278900	+		15969	20628	11573	11662	15618	15618					-0.0033761023076976926
FTPTLDPVF	9	Unmodified	_FTPTLDPVF_					0	0	0			REV__ENST00000603680.5_1_12:51748165-51753149:-|nuORF	REV__ENST00000603680.5_1_12:51748165-51753149:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	519.6734008789062	2	518.771126	1035.5277	-0.7478	-0.00038794	-1.0211	-0.00052972	-1.7689	-0.00091766	518.7690838948878	107.31	1.0689	108.06	107.69	108.76	0.75436					64	20	5	0	0	0	0.68216	1	40675	40675		8.5933	3.2964	1	9614900	+		15970	19170	11574	11663	15619	15619					0.011355358374203206
FTQDKFSKNSL	11	Unmodified	_FTQDKFSKNSL_					0	0	0		ENSG00000196440|ENST00000423738|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4	MULTI-SECPEP	A375_MHC_IP_R1	1	439.2942199707031	3	438.894465	1313.66157	-0.021297	-9.3471E-06	-0.44295	-0.00019441	-0.46425	-0.00020376	438.8943123306883	40.484	0.30498	40.484	40.304	40.609	0					10	5	2	0	0	0	0.98524	1	13940	13940		5.8681	2.2755	1	3275300			15971	9041	11575	11664	15620	15620					0.01728149872337781
FTQEEEEEDGG	11	Unmodified	_FTQEEEEEDGG_					0	0	0		nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-4|ZNF598	nc|ENSG00000167962|Q86UK7-2|ZNF598	nc|ENSG00000167962|Q86UK7-2|ZNF598	MSMS	A375_MHC_IP_R1	1	635.3084716796875	2	635.241312	1268.46807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.901	1	87.901	87.401	88.401	0								0	0	0	0.15837	1	32262	32262		15.248	7.093	1				15972	14751	11576	11665	15621	15621					-0.1554247642525297
FTQKFYLK	8	Unmodified	_FTQKFYLK_					0	0	0		ZSCAN5A|p.S425F|1|0.32|ENSG00000131848|chr19:56221792-56221792|G/A|missense_variant	ZSCAN5A|p.S425F|1|0.32|ENSG00000131848|chr19:56221792-56221792|G/A|missense_variant	ZSCAN5A|p.S425F|1|0.32|ENSG00000131848|chr19:56221792-56221792|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	538.15869140625	2	537.80276	1073.59097	-0.89214	-0.0004798	-0.31521	-0.00016952	-1.2074	-0.00064932	537.8024866649473	31.548	0.45961	32.27	31.927	32.386	0.72216					10	8	2	0	0	0	0.96266	1	11183	11183		11.64	0	1	1290700			15973	30257	11577	11666	15622	15622					0.05711521345301662
FTQKINSTW	9	Unmodified	_FTQKINSTW_					0	0	0		ENST00000555408.5_1_12:56361645-56362592:+|nuORF	ENST00000555408.5_1_12:56361645-56362592:+|nuORF	ENST00000555408.5_1_12:56361645-56362592:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	563.1901245117188	2	562.790381	1123.56621	-0.044081	-2.4808E-05	-0.20844	-0.00011731	-0.25253	-0.00014212	562.7900613727663	48.547	0.60741	48.547	48.274	48.882	0					24	11	3	0	0	0	0.035151	1	17119	17119		75.571	41.169	1	7403000			15974	13431	11578	11667	15623	15623					0.009368414719347129
FTQKINSTW	9	Unmodified	_FTQKINSTW_					0	0	0		ENST00000555408.5_1_12:56361645-56362592:+|nuORF	ENST00000555408.5_1_12:56361645-56362592:+|nuORF	ENST00000555408.5_1_12:56361645-56362592:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	563.1897583007812	2	562.790381	1123.56621	-0.41966	-0.00023618	-0.44916	-0.00025278	-0.86882	-0.00048896	562.7901385764837	47.728	0.65773	48.489	48.225	48.883	0.76128					18	12	2	0	0	0	0.053555	1	17895	17895		80.676	44.549	1	6478600			15975	13431	11578	11667	15624	15624					0.009368414719347129
FTQPCHAQL	9	Unmodified	_FTQPCHAQL_					0	0	0			REV__ENST00000586299.1_1_17:76674036-76674234:-|nuORF	REV__ENST00000586299.1_1_17:76674036-76674234:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	522.690185546875	2	522.750201	1043.48585	-0.45037	-0.00023543	-0.019258	-1.0067E-05	-0.46963	-0.0002455	522.7500845202966	102.61	0.76151	102.61	102.4	103.17	0					26	14	3	0	0	0	0.63811	1	37846	37846		12.532	0	1	1424400	+		15976	26385	11579	11668	15625	15625					-0.034153431227423425
FTQPIKQDR	9	Unmodified	_FTQPIKQDR_					0	0	0		ENST00000405233.5_1_2:272273-272309:+|nuORF;ENST00000272067.10_2_2:272273-275200:+|nuORF	ENST00000405233.5_1_2:272273-272309:+|nuORF	ENST00000405233.5_1_2:272273-272309:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	378.60858154296875	3	378.208495	1131.60366	0.72904	0.00027573	-0.25033	-9.4678E-05	0.4787	0.00018105	378.20832625034274	48.516	0.91115	48.516	48.173	49.084	0					41	17	4	0	0	0	0.54799	1	17059	17059		17.443	0	1	13173000			15977	10382	11580	11669	15626	15626					0.04311932737573443
FTQPIKQDR	9	Unmodified	_FTQPIKQDR_					0	0	0		ENST00000405233.5_1_2:272273-272309:+|nuORF;ENST00000272067.10_2_2:272273-275200:+|nuORF	ENST00000405233.5_1_2:272273-272309:+|nuORF	ENST00000405233.5_1_2:272273-272309:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	378.6084899902344	3	378.208495	1131.60366	0.27574	0.00010429	-0.24672	-9.3313E-05	0.029014	1.0973E-05	378.208360613123	47.66	0.76095	48.421	48.022	48.783	0.76127					40	14	4	0	0	0	0.56537	1	17818	17818		16.566	0	1	14543000			15978	10382	11580	11669	15627	15627					0.04311932737573443
FTQTYKVPY	9	Unmodified	_FTQTYKVPY_					0	0	0			REV__ENSG00000112378|ENST00000421351|PERP	REV__ENSG00000112378|ENST00000421351|PERP	MULTI-SECPEP	A375_MHC_IP_R2	2	573.6788330078125	2	573.795132	1145.57571	-0.25775	-0.00014789	-1.8275	-0.0010486	-2.0853	-0.0011965	573.7937575170109	80.317	0.8128	81.062	80.81	81.622	0.74474					24	15	2	0	0	0	0.67483	1	30504	30504		20.454	0.039092	1	3356400	+		15979	17730	11581	11670	15628	15628					0.008746097574885425
FTRCLRWF	8	Unmodified	_FTRCLRWF_					0	0	0			REV__nc|ENSG00000134444|Q9P260|RELCH	REV__nc|ENSG00000134444|Q9P260|RELCH	MULTI-SECPEP	A375_MHC_IP_R2	2	376.62127685546875	3	376.863895	1127.56985	0.31775	0.00011975	1.4517	0.0005471	1.7695	0.00066684	376.86444211124984	46.318	0.50899	47.083	46.855	47.364	0.76519					16	9	2	0	0	0	0.972	1	17452	17452		3.2813	3.0998	1	1537100	+		15980	18780	11582	11671	15629	15629					0.011172327648182545
FTRCLRWF	8	Unmodified	_FTRCLRWF_					0	0	0			REV__nc|ENSG00000134444|Q9P260|RELCH	REV__nc|ENSG00000134444|Q9P260|RELCH	MULTI-MATCH	A375_MHC_IP_R1	1		3	376.863895	1127.56985	0.26679	0.00010054	2.0128	0.00075856	2.2796	0.0008591	376.8646113339684	47.195	0.51489	47.195	46.952	47.467	0	0.055866	0.0002119	NaN	3.2813	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1211700	+		15981	18780	11582	11671							0.011172327648182545
FTREDKYSCQY	11	Unmodified	_FTREDKYSCQY_					0	0	0		ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;nc|ENSG00000148143|Q96JM2-2|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	MSMS	A375_MHC_IP_R1	1	480.4452819824219	3	480.546848	1438.61871	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.581	1	23.581	23.081	24.081	0								0	0	0	0.16297	1	6501	6501		1.3296	0	1				15982	5716	11583	11672	15630	15630					-0.0830498824739152
FTREDKYSCQY	11	Unmodified	_FTREDKYSCQY_					0	0	0		ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;nc|ENSG00000148143|Q96JM2-2|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	MSMS	A375_MHC_IP_R2	2	480.4449768066406	3	480.546848	1438.61871	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.049	1	22.668	22.168	23.168	0.61932								0	0	0	0.16297	1	6983	6983		1.3296	0	1				15983	5716	11583	11672	15631	15631					-0.0830498824739152
FTREDKYSCQY	11	Unmodified	_FTREDKYSCQY_					0	0	0		ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;nc|ENSG00000148143|Q96JM2-2|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	MSMS	A375_MHC_IP_R2	2	480.4451599121094	3	480.546848	1438.61871	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.618	1	23.248	22.748	23.748	0.63014								0	0	0	0.16334	1	7195	7195		0.45452	0	1				15984	5716	11583	11672	15632	15632					-0.0830498824739152
FTREDKYSCQY	11	Unmodified	_FTREDKYSCQY_					0	0	0		ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;nc|ENSG00000148143|Q96JM2-2|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	MSMS	A375_MHC_IP_R2	2	480.4454040527344	3	480.546848	1438.61871	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.179	1	23.809	23.309	24.309	0.63014								0	0	0	0.16297	1	7417	7417		1.3296	0.31607	1				15985	5716	11583	11672	15633	15633					-0.0830498824739152
FTRGNTQTRK	10	Unmodified	_FTRGNTQTRK_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|91|3|sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|91|3|sense	MULTI-MSMS	A375_MHC_IP_R1	1	403.92462158203125	3	403.554666	1207.64217	-0.42617	-0.00017198	3.7133	0.0014985	3.2872	0.0013266	403.5564430877613	73.751	0.25329	73.751	73.589	73.843	0					6	4	2	0	0	0	0.72061	1	26799	26799		3.0723	0.57378	1	460080	+		15986	26898	11584	11673	15634	15634					0.04665238372058411
FTRREASF	8	Unmodified	_FTRREASF_					0	0	0			REV__ENST00000578199.5_1_17:37873700-37873802:+|nuORF	REV__ENST00000578199.5_1_17:37873700-37873802:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.6614990234375	2	507.261791	1012.50903	-0.18041	-9.1515E-05	-0.25209	-0.00012787	-0.4325	-0.00021939	507.2615746154729	35.657	0.81483	35.657	35.269	36.084	0					35	15	3	0	0	0	0.93661	1	11857	11857		21.747	1.293	1	11589000	+		15987	26326	11585	11674	15635	15635					0.0032741898622816734
FTRREASF	8	Unmodified	_FTRREASF_					0	0	0			REV__ENST00000578199.5_1_17:37873700-37873802:+|nuORF	REV__ENST00000578199.5_1_17:37873700-37873802:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9802551269531	2	507.261791	1012.50903	-0.93764	-0.00047563	0.13946	7.0744E-05	-0.79818	-0.00040489	507.2618611197464	34.745	0.70715	35.509	35.171	35.878	0.76338					33	13	4	0	0	0	0.93661	1	12621	12621		15.847	15.847	1	11346000	+		15988	26326	11585	11674	15636	15636					0.0032741898622816734
FTRRGEDLF	9	Unmodified	_FTRRGEDLF_					0	0	0		ENST00000465677.1_1_9:33034269-33037131:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1	ENST00000465677.1_1_9:33034269-33037131:+|nuORF	ENST00000465677.1_1_9:33034269-33037131:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	381.2647705078125	3	380.864729	1139.57236	0.055439	2.1115E-05	-0.30075	-0.00011454	-0.24531	-9.3428E-05	380.8646381888899	41.301	0.80934	41.301	40.813	41.622	0					24	15	3	0	0	0	0.67471	1	14243	14243		12.873	0	1	3259100			15989	1827	11586	11675	15637	15637					0.008153597034606719
FTRVFHFFRLL	11	Unmodified	_FTRVFHFFRLL_					0	0	0			REV__ENST00000440048.1_1_6:31762999-31763047:-|nuORF	REV__ENST00000440048.1_1_6:31762999-31763047:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	494.19915771484375	3	494.950468	1481.82957	-0.6266	-0.00031013	1.4484	0.00071688	0.82179	0.00040675	495.28598354007045	133.28	0.51201	133.28	132.89	133.41	0					13	9	2	0	0	0	0.99916	1	51400	51400		1.1098	0	1	4719600	+		15990	24794	11587	11676	15638	15638					0.10793301647436238
FTSAVEAVFI	10	Unmodified	_FTSAVEAVFI_					0	0	0			REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	542.0343627929688	2	542.289682	1082.56481	-0.67156	-0.00036418	-0.50527	-0.00027401	-1.1768	-0.00063819	542.2892891772576	86.149	0.56264	86.882	86.743	87.306	0.73301					14	10	2	0	0	0	0.78945	1	32730	32730		9.3831	0	1	1425100	+		15991	28544	11588	11677	15639	15639					0.026832073831883463
FTSEPRLI	8	Unmodified	_FTSEPRLI_					0	0	0		ENSG00000130741|ENST00000253039|EIF2S3;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000130741|ENST00000253039|EIF2S3	ENSG00000130741|ENST00000253039|EIF2S3	MULTI-SECPEP	A375_MHC_IP_R1	1	482.1685791015625	2	481.768917	961.523281	-0.40889	-0.00019699	0.23115	0.00011136	-0.17773	-8.5626E-05	481.7689881343179	58.239	0.81213	58.239	57.873	58.685	0					35	15	3	0	0	0	0.55372	1	20869	20869		57.471	15.377	1	5685100			15992	4276	11589	11678	15640	15640					0.04098071414523474
FTSEPRLI	8	Unmodified	_FTSEPRLI_					0	0	0		ENSG00000130741|ENST00000253039|EIF2S3;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B	ENSG00000130741|ENST00000253039|EIF2S3	ENSG00000130741|ENST00000253039|EIF2S3	MULTI-SECPEP	A375_MHC_IP_R2	2	482.1683044433594	2	481.768917	961.523281	-0.9367	-0.00045127	0.38932	0.00018756	-0.54738	-0.00026371	481.76898547961247	57.309	1.0183	58.058	57.711	58.729	0.74894					39	19	3	0	0	0	0.64713	1	21628	21628		43.858	13.222	1	5564300			15993	4276	11589	11678	15641	15641					0.04098071414523474
FTSFYTHMCN	10	Unmodified	_FTSFYTHMCN_					0	0	0		SLC12A8|p.S585F|1|0.34|ENSG00000221955|chr3:125092150-125092150|G/A|missense_variant	SLC12A8|p.S585F|1|0.34|ENSG00000221955|chr3:125092150-125092150|G/A|missense_variant	SLC12A8|p.S585F|1|0.34|ENSG00000221955|chr3:125092150-125092150|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	626.1512451171875	2	625.752084	1249.48961	-0.42674	-0.00026703	-0.58351	-0.00036513	-1.0102	-0.00063216	625.7515242901006	37.617	0.40956	37.617	37.351	37.761	0					19	7	3	0	0	0	0.63639	1	12669	12669		18.146	18.146	1	6557200			15994	29163	11590	11679	15642	15642					-0.12515041411188577
FTSFYTHMCN	10	Unmodified	_FTSFYTHMCN_					0	0	0		SLC12A8|p.S585F|1|0.34|ENSG00000221955|chr3:125092150-125092150|G/A|missense_variant	SLC12A8|p.S585F|1|0.34|ENSG00000221955|chr3:125092150-125092150|G/A|missense_variant	SLC12A8|p.S585F|1|0.34|ENSG00000221955|chr3:125092150-125092150|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	626.3952026367188	2	625.752084	1249.48961	-1.4485	-0.00090641	0.61899	0.00038733	-0.82952	-0.00051908	625.7522893819834	36.945	0.40437	37.715	37.513	37.917	0.7709					18	7	3	0	0	0	0.55789	2	13540	13500;13540		24.021	24.021	1	5450500			15995	29163	11590	11679	15643;15644	15644					-0.12515041411188577
FTSFYTHMCN	10	Unmodified	_FTSFYTHMCN_					0	0	0		SLC12A8|p.S585F|1|0.34|ENSG00000221955|chr3:125092150-125092150|G/A|missense_variant	SLC12A8|p.S585F|1|0.34|ENSG00000221955|chr3:125092150-125092150|G/A|missense_variant	SLC12A8|p.S585F|1|0.34|ENSG00000221955|chr3:125092150-125092150|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	625.752084	1249.48961	-0.42674	-0.00026703	-0.58351	-0.00036513	-1.0102	-0.00063216	625.7515242901006	37.617	0.40956	37.617	37.351	37.761	0	-0.049353	-0.00088543	NaN	24.021	19	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6557200			15996	29163	11590	11679							-0.12515041411188577
FTSFYTHMCN	10	Unmodified	_FTSFYTHMCN_					0	0	0		SLC12A8|p.S585F|1|0.34|ENSG00000221955|chr3:125092150-125092150|G/A|missense_variant	SLC12A8|p.S585F|1|0.34|ENSG00000221955|chr3:125092150-125092150|G/A|missense_variant	SLC12A8|p.S585F|1|0.34|ENSG00000221955|chr3:125092150-125092150|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	625.752084	1249.48961	-1.4485	-0.00090641	0.61899	0.00038733	-0.82952	-0.00051908	625.7522893819834	36.945	0.40437	37.715	37.513	37.917	0.7709	0.049353	0.00061949	NaN	24.021	18	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5450500			15997	29163	11590	11679							-0.12515041411188577
FTSRELENL	9	Unmodified	_FTSRELENL_					0	0	0		tr|U7STQ4|U7STQ4_FUSNURhodanesedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01148PE=4SV=1	tr|U7STQ4|U7STQ4_FUSNURhodanesedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01148PE=4SV=1	tr|U7STQ4|U7STQ4_FUSNURhodanesedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01148PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	555.18505859375	2	554.785296	1107.55604	-0.51157	-0.00028381	1.112	0.0006169	0.60039	0.00033309	554.7861403732433	40.304	0.76255	40.304	40.1	40.863	0					27	14	2	0	0	0	0.12771	1	13846	13846		45.7	1.9272	1	2484400			15998	29711	11591	11680	15645	15645					0.006562337467130419
FTSRELENL	9	Unmodified	_FTSRELENL_					0	0	0		tr|U7STQ4|U7STQ4_FUSNURhodanesedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01148PE=4SV=1	tr|U7STQ4|U7STQ4_FUSNURhodanesedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01148PE=4SV=1	tr|U7STQ4|U7STQ4_FUSNURhodanesedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01148PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	554.785296	1107.55604	-0.81918	-0.00045447	1.6484	0.0009145	0.82921	0.00046003	554.7862890320681	39.5	1.1681	40.275	39.914	41.082	0.77451	-0.014953	0.00027901	NaN	45.7	31	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1958000			15999	29711	11591	11680							0.006562337467130419
FTSVVQQLY	9	Unmodified	_FTSVVQQLY_					0	0	0			REV__ENSG00000167196|ENST00000308275|FBXO22	REV__ENSG00000167196|ENST00000308275|FBXO22	MSMS	A375_MHC_IP_R1	1	542.7028198242188	2	542.787307	1083.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.446	1	26.446	25.946	26.946	0								0	0	0	0.15486	1	7883	7883		3.9444	1.8846	1		+		16000	20738	11592	11681	15646	15646					0.021623232404408554
FTTAQKRVY	9	Unmodified	_FTTAQKRVY_					0	0	0		nc|ENSG00000116741|P41220-4|RGS2;nc|ENSG00000116741|P41220-3|RGS2;nc|ENSG00000116741|P41220-2|RGS2;ENSG00000116741|ENST00000235382|RGS2	nc|ENSG00000116741|P41220-4|RGS2	nc|ENSG00000116741|P41220-4|RGS2	MULTI-MSMS	A375_MHC_IP_R1	1	557.7069091796875	2	557.306198	1112.59784	-0.29526	-0.00016455	0.38026	0.00021192	0.085003	4.7372E-05	557.3064712988948	21.422	0.30615	21.422	21.199	21.505	0					13	5	3	0	0	0	0.0090297	1	5631	5631		99.755	54.056	1	2947800			16001	3425	11593	11682	15647	15647					0.04604834225892773
FTTAQKRVY	9	Unmodified	_FTTAQKRVY_					0	0	0		nc|ENSG00000116741|P41220-4|RGS2;nc|ENSG00000116741|P41220-3|RGS2;nc|ENSG00000116741|P41220-2|RGS2;ENSG00000116741|ENST00000235382|RGS2	nc|ENSG00000116741|P41220-4|RGS2	nc|ENSG00000116741|P41220-4|RGS2	MULTI-SECPEP	A375_MHC_IP_R1	1	372.6159973144531	3	371.873224	1112.59784	0.5702	0.00021204	-0.22083	-8.2121E-05	0.34937	0.00012992	371.8731377514542	21.377	0.45745	21.377	21.148	21.606	0					20	8	3	0	0	0	0.69179	1	5596	5596		21.59	12.614	1	14780000			16002	3425	11593	11682	15648	15648					0.04604834225892773
FTTAQKRVY	9	Unmodified	_FTTAQKRVY_					0	0	0		nc|ENSG00000116741|P41220-4|RGS2;nc|ENSG00000116741|P41220-3|RGS2;nc|ENSG00000116741|P41220-2|RGS2;ENSG00000116741|ENST00000235382|RGS2	nc|ENSG00000116741|P41220-4|RGS2	nc|ENSG00000116741|P41220-4|RGS2	MULTI-SECPEP	A375_MHC_IP_R2	2	372.60736083984375	3	371.873224	1112.59784	0.14585	5.4239E-05	-0.30888	-0.00011486	-0.16303	-6.0625E-05	371.87313813255645	19.713	0.60751	20.323	19.993	20.6	0.61029					20	11	2	0	0	0	0.69179	1	6100	6100		21.59	13.981	1	7612500			16003	3425	11593	11682	15649	15649					0.04604834225892773
FTTAQKRVY	9	Unmodified	_FTTAQKRVY_					0	0	0		nc|ENSG00000116741|P41220-4|RGS2;nc|ENSG00000116741|P41220-3|RGS2;nc|ENSG00000116741|P41220-2|RGS2;ENSG00000116741|ENST00000235382|RGS2	nc|ENSG00000116741|P41220-4|RGS2	nc|ENSG00000116741|P41220-4|RGS2	MULTI-SECPEP	A375_MHC_IP_R2	2	556.7088012695312	2	557.306198	1112.59784	-1.0654	-0.00059377	0.16878	9.4061E-05	-0.89666	-0.00049971	557.306514493492	19.746	0.50564	20.356	20.044	20.549	0.6103					13	9	2	0	0	0	0.74875	1	6118	6118		6.7232	0	1	1376600			16004	3425	11593	11682	15650	15650					0.04604834225892773
FTTEGHIV	8	Unmodified	_FTTEGHIV_					0	0	0		ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	MULTI-SECPEP	A375_MHC_IP_R2	2	452.6419677734375	2	452.232168	902.449782	-0.47436	-0.00021452	-0.079455	-3.5932E-05	-0.55382	-0.00025045	452.2319504017959	39.011	0.46116	39.786	39.453	39.914	0.77451					10	8	2	0	0	0	0.91495	1	14417	14417		18.135	0	1	994070			16005	4550	11594	11683	15651	15651					-0.005344770279521072
FTTEGHIV	8	Unmodified	_FTTEGHIV_					0	0	0		ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	MULTI-MATCH	A375_MHC_IP_R1	1		2	452.232168	902.449782	-0.41653	-0.00018837	0.25949	0.00011735	-0.15705	-7.1022E-05	452.232598675691	39.847	0.2035	39.847	39.744	39.948	0	0.030393	0.00027804	NaN	18.135	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	644100			16006	4550	11594	11683							-0.005344770279521072
FTTFCSVGEW	10	Unmodified	_FTTFCSVGEW_					0	0	0		nc|ENSG00000135333|Q15375-2|EPHA7;nc|ENSG00000135333|Q15375-4|EPHA7;ENSG00000135333|ENST00000369303|EPHA7;EPHA7|p.D921N|1|0.36|ENSG00000135333|chr6:93245419-93245419|C/T|missense_variant	nc|ENSG00000135333|Q15375-2|EPHA7	nc|ENSG00000135333|Q15375-2|EPHA7	MSMS	A375_MHC_IP_R1	1	588.6769409179688	2	588.755149	1175.49575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.517	1	72.517	72.017	73.017	0								0	0	0	0.15158	1	26383	26383		14.838	2.5976	1				16007	4669	11595	11684	15652	15652					-0.08498199908012793
FTTKRPNTFF	10	Unmodified	_FTTKRPNTFF_					0	0	0		ENST00000430258.2_1_X:110867440-110867509:-|nuORF;ENSG00000105640|ENST00000222247|RPL18A	ENST00000430258.2_1_X:110867440-110867509:-|nuORF	ENST00000430258.2_1_X:110867440-110867509:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	420.623779296875	3	420.224146	1257.65061	-0.14187	-5.9618E-05	-0.67665	-0.00028434	-0.81852	-0.00034396	420.22375621359487	48.689	0.65932	49.446	48.98	49.639	0.75736					21	12	3	0	0	0	0.23154	2	18299	18260;18299		46.022	28.159	1	2214200			16008	2619	11596	11685	15653;15654	15654					0.03208792288683071
FTTKVLSAPTL	11	Unmodified	_FTTKVLSAPTL_					0	0	0		ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MSMS	A375_MHC_IP_R2	2	393.63140869140625	3	393.232418	1176.67542	-0.69728	-0.00027419	-0.53914	-0.00021201	-1.2364	-0.0004862	393.2322059896037	33.806	0.50507	34.558	34.298	34.803	0.75225					19	9	3	0	0	0	0.69759	1	12165	12165		9.5301	0	1	2722200			16009	4781	11597	11686	15655	15655					0.09415427371436635
FTTLQNYE	8	Unmodified	_FTTLQNYE_					0	0	0			REV__ENSG00000240720|ENST00000458448|LRRD1	REV__ENSG00000240720|ENST00000458448|LRRD1	MULTI-MSMS	A375_MHC_IP_R1	1	508.6867370605469	2	508.24019	1014.46583	-0.3897	-0.00019806	-1.2843	-0.00065272	-1.674	-0.00085077	508.23870131837407	59.566	0.66008	59.566	59.245	59.905	0					21	12	2	0	0	0	0.72008	1	21306	21306		28.487	6.7402	1	979740	+		16010	22780	11598	11687	15656	15656					-0.04082815581716659
FTTLQNYE	8	Unmodified	_FTTLQNYE_					0	0	0			REV__ENSG00000240720|ENST00000458448|LRRD1	REV__ENSG00000240720|ENST00000458448|LRRD1	MULTI-SECPEP	A375_MHC_IP_R1	1	508.6867370605469	2	508.24019	1014.46583	-0.3897	-0.00019806	-1.2843	-0.00065272	-1.674	-0.00085077	508.23870131837407	59.566	0.66008	59.566	59.245	59.905	0					21	12	2	0	0	0	0.8957	1	21306	21306		28.487	6.7402	1	979740	+		16011	22780	11598	11687	15657	15657					-0.04082815581716659
FTVMRAILL	9	Unmodified	_FTVMRAILL_					0	0	0		ENST00000511573.5_1_4:89680360-89680396:-|nuORF	ENST00000511573.5_1_4:89680360-89680396:-|nuORF	ENST00000511573.5_1_4:89680360-89680396:-|nuORF	MSMS	A375_MHC_IP_R2	2	532.2164306640625	2	532.320263	1062.62597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.09	1	124.42	123.92	124.92	0.32969								0	0	0	0.15486	1	47885	47885		7.2892	2.0586	1				16012	12909	11599	11688	15658	15658					0.09716440881629751
FTVQSKNIF	9	Unmodified	_FTVQSKNIF_					0	0	0		ATF7IP2|p.D660N|1|0.14|ENSG00000166669|chr16:10482178-10482178|G/A|missense_variant	ATF7IP2|p.D660N|1|0.14|ENSG00000166669|chr16:10482178-10482178|G/A|missense_variant	ATF7IP2|p.D660N|1|0.14|ENSG00000166669|chr16:10482178-10482178|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	362.2732238769531	3	361.865958	1082.57605	-0.28765	-0.00010409	0.44724	0.00016184	0.15959	5.7749E-05	362.20045436757283	44.697	0.40714	45.466	45.239	45.646	0.7691					13	7	2	0	0	0	0.76187	1	16656	16656		2.2828	0	1	1517300			16013	197	11600	11689	15659	15659					0.03806029477323136
FTVYVTDGKH	10	Unmodified	_FTVYVTDGKH_					0	0	0		ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MULTI-MSMS	A375_MHC_IP_R1	1	389.9329528808594	3	389.532868	1165.57677	0.14577	5.6783E-05	1.5129	0.00058931	1.6586	0.00064609	389.5328168349697	19.891	0.60909	19.891	19.623	20.232	0					32	11	4	0	0	0	0.64579	1	5017	5017		17.443	1.1681	1	6370700			16014	6897	11601	11690	15660	15660					0.0006082412637624657
FTWEGLYNV	9	Unmodified	_FTWEGLYNV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-MSMS	A375_MHC_IP_R1	1	565.1720581054688	2	564.771657	1127.52876	0.023932	1.3516E-05	-0.62535	-0.00035318	-0.60142	-0.00033967	564.7712602178568	126.84	0.40472	126.84	126.61	127.01	0					13	7	3	0	0	0	0.067501	1	48515	48515		57.471	42.633	1	24024000			16015	2365	11602	11691	15661	15661					-0.02990249793674593
FTWEGLYNV	9	Unmodified	_FTWEGLYNV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-MSMS	A375_MHC_IP_R2	2	564.702392578125	2	564.771657	1127.52876	-0.43163	-0.00024377	0.84355	0.00047641	0.41191	0.00023264	564.7720272698278	126.47	0.45442	126.77	126.53	126.99	0.2951					18	8	3	0	0	0	0.022213	2	49455	49455;49500		81.613	40.497	1	23349000			16016	2365	11602	11691	15662;15663	15662					-0.02990249793674593
FTWHAKSKVEY	11	Unmodified	_FTWHAKSKVEY_					0	0	0		ENSG00000163785|ENST00000623711|RYK;nc|ENSG00000163785|P34925-2|RYK	ENSG00000163785|ENST00000623711|RYK	ENSG00000163785|ENST00000623711|RYK	MULTI-SECPEP	A375_MHC_IP_R2	2	466.63934326171875	3	465.906705	1394.69829	-0.99166	-0.00046202	-2.3286	-0.0010849	-3.3203	-0.0015469	466.24006410379235	21.846	0.30711	22.465	22.285	22.592	0.61932					7	5	2	0	0	0	0.99778	1	6937	6937		6.2344	1.5184	1	1989300			16017	6719	11603	11692	15664	15664					0.01672446488919377
FTWPRSRPYTW	11	Unmodified	_FTWPRSRPYTW_					0	0	0			REV__ENST00000374677.7_1_6:33169234-33169279:+|nuORF	REV__ENST00000374677.7_1_6:33169234-33169279:+|nuORF	MSMS	A375_MHC_IP_R1	1	499.6347351074219	3	499.585966	1495.73607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.462	1	61.462	60.962	61.962	0								0	0	0	0.16297	1	22159	22159		1.3296	0	1		+		16018	24110	11604	11693	15665	15665					0.008029574743659396
FTWPRSRPYTW	11	Unmodified	_FTWPRSRPYTW_					0	0	0			REV__ENST00000374677.7_1_6:33169234-33169279:+|nuORF	REV__ENST00000374677.7_1_6:33169234-33169279:+|nuORF	MSMS	A375_MHC_IP_R2	2	499.6345520019531	3	499.585966	1495.73607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.81	1	61.555	61.055	62.055	0.74503								0	0	0	0.16297	1	23033	23033		1.3296	0	1		+		16019	24110	11604	11693	15666	15666					0.008029574743659396
FTWSPYKGTAI	11	Unmodified	_FTWSPYKGTAI_					0	0	0			REV__ENSG00000121691|ENST00000241052|CAT	REV__ENSG00000121691|ENST00000241052|CAT	MSMS	A375_MHC_IP_R1	1	635.8272705078125	2	635.826963	1269.63937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.07	1	122.07	121.57	122.57	0								0	0	0	0.16124	1	45379	45379		12.241	1.4411	1		+		16020	18170	11605	11694	15667	15667					0.015339701945777051
FTYEPQDFYRL	11	Unmodified	_FTYEPQDFYRL_					0	0	0		ENSG00000168907|ENST00000397272|PLA2G4F;nc|ENSG00000168907|Q68DD2-3|PLA2G4F	ENSG00000168907|ENST00000397272|PLA2G4F	ENSG00000168907|ENST00000397272|PLA2G4F	MULTI-SECPEP	A375_MHC_IP_R1	1	493.142822265625	3	493.56987	1477.68778	-0.36349	-0.00017941	-0.31396	-0.00015496	-0.67745	-0.00033437	493.5696676733856	50.607	0.30581	50.607	50.408	50.713	0					8	5	2	0	0	0	1.0002	1	17948	17948		1.3296	0.11481	1	1876800			16021	7357	11606	11695	15668	15668					-0.0319558095618504
FTYHPMAP	8	Unmodified	_FTYHPMAP_					0	0	0		CHRNB3|p.S326F|1|0.25|ENSG00000147432|chr8:42732284-42732284|C/T|missense_variant	CHRNB3|p.S326F|1|0.25|ENSG00000147432|chr8:42732284-42732284|C/T|missense_variant	CHRNB3|p.S326F|1|0.25|ENSG00000147432|chr8:42732284-42732284|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	482.1868896484375	2	482.223288	962.432024	-0.9011	-0.00043453	-1.039	-0.00050103	-1.9401	-0.00093556	482.2227966208866	57.652	0.91764	58.401	57.762	58.679	0.74894					28	17	2	0	0	0	0.7758	1	21600	21600		10.183	0	1	2528000			16022	518	11607	11696	15669	15669					-0.05069515554453119
FTYQCCQWR	9	Unmodified	_FTYQCCQWR_					0	0	0		ENST00000323557.11_1_6:52945863-52947322:+|nuORF	ENST00000323557.11_1_6:52945863-52947322:+|nuORF	ENST00000323557.11_1_6:52945863-52947322:+|nuORF	MSMS	A375_MHC_IP_R2	2	412.2485656738281	3	412.175921	1233.50593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.414	1	4.8309	4.3309	5.3309	0.41691								0	0	0	0.15486	1	1425	1425		0.23584	0.076522	1				16023	10710	11608	11697	15670	15670					-0.10147915454444956
FTYQCCQWR	9	Unmodified	_FTYQCCQWR_					0	0	0		ENST00000323557.11_1_6:52945863-52947322:+|nuORF	ENST00000323557.11_1_6:52945863-52947322:+|nuORF	ENST00000323557.11_1_6:52945863-52947322:+|nuORF	MSMS	A375_MHC_IP_R2	2	412.24835205078125	3	412.175921	1233.50593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.608	1	16.196	15.696	16.696	0.58774								0	0	0	0.15486	1	4659	4659		0.23584	0.076522	1				16024	10710	11608	11697	15671	15671					-0.10147915454444956
FTYTDSDRY	9	Unmodified	_FTYTDSDRY_					0	0	0		nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1;ENSG00000011143|ENST00000393119|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	MULTI-SECPEP	A375_MHC_IP_R1	1	584.6513061523438	2	584.251286	1166.48802	-0.25407	-0.00014844	-0.19094	-0.00011156	-0.44501	-0.00026	584.2512656219453	34.722	0.25284	34.722	34.557	34.81	0					8	4	2	0	0	0	0.4261	1	11488	11488		37.974	13.953	1	3593800			16025	992	11609	11698	15672	15672					-0.08856635903953247
FTYTDSDRY	9	Unmodified	_FTYTDSDRY_					0	0	0		nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1;ENSG00000011143|ENST00000393119|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	MULTI-MATCH	A375_MHC_IP_R2	2		2	584.251286	1166.48802	-0.83395	-0.00048724	-0.54415	-0.00031792	-1.3781	-0.00080516	584.7527705585685	34.1	0.40604	34.852	34.651	35.057	0.75225	0.065149	-0.00034037	NaN	37.974	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2749400			16026	992	11609	11698							-0.08856635903953247
FTYTLPQL	8	Unmodified	_FTYTLPQL_					0	0	0			REV__ENST00000269701.6_1_19:15465203-15465326:-|nuORF	REV__ENST00000269701.6_1_19:15465203-15465326:-|nuORF	MSMS	A375_MHC_IP_R2	2	491.68939208984375	2	491.765843	981.517133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.153	1	26.813	26.313	27.313	0.65992								0	0	0	0.16876	1	8814	8814		18.135	1.1927	1		+		16027	23269	11610	11699	15673	15673					0.025635531830062064
FVAEPDNKNVY	11	Unmodified	_FVAEPDNKNVY_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-SECPEP	A375_MHC_IP_R1	1	648.1987915039062	2	648.31696	1294.61937	-0.29838	-0.00019344	0.041241	2.6737E-05	-0.25714	-0.00016671	648.3168123571165	42.155	0.50571	42.155	41.88	42.386	0					26	9	4	0	0	0	0.040588	1	14604	14604		97.741	82.493	1	11479000			16028	3557	11611	11700	15674	15674					-0.016158255360551266
FVAEPDNKNVY	11	Unmodified	_FVAEPDNKNVY_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-SECPEP	A375_MHC_IP_R2	2	648.7164306640625	2	648.31696	1294.61937	-0.81158	-0.00052616	0.0756	4.9013E-05	-0.73598	-0.00047715	648.3169287338183	41.497	0.61106	42.272	42.047	42.659	0.77451					25	11	4	0	0	0	0.014282	1	15384	15384		124.95	71.12	1	15952000			16029	3557	11611	11700	15675	15675					-0.016158255360551266
FVAKMLGV	8	Unmodified	_FVAKMLGV_					0	0	0		ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	MSMS	A375_MHC_IP_R1	1	432.65277099609375	2	432.754224	863.493896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.311	1	76.311	75.811	76.811	0								0	0	0	0.16876	1	27815	27815		10.183	0	1				16030	6289	11612	11701	15676	15676					0.05668835864696575
FVANAVTVI	9	Unmodified	_FVANAVTVI_					0	0	0			REV__ENSG00000135919|ENST00000409304|SERPINE2	REV__ENSG00000135919|ENST00000409304|SERPINE2	MULTI-SECPEP	A375_MHC_IP_R1	1	467.6554870605469	2	467.273835	932.533118	-0.29676	-0.00013867	0.16567	7.7411E-05	-0.1311	-6.1258E-05	467.2738089679883	96.044	0.30292	96.044	95.817	96.12	0					8	5	2	0	0	0	0.48581	1	35232	35232		32.117	7.4431	1	729080	+		16031	15735	11613	11702	15677	15677					0.06415259419895847
FVAVDRFTV	9	Unmodified	_FVAVDRFTV_					0	0	0			REV__ENSG00000234284|ENST00000444149|ZNF879	REV__ENSG00000234284|ENST00000444149|ZNF879	MULTI-SECPEP	A375_MHC_IP_R1	1	526.7144165039062	2	527.290017	1052.56548	-0.2535	-0.00013367	-3.1594	-0.0016659	-3.4129	-0.0017996	527.7899030537175	111.97	0.25291	111.97	111.87	112.13	0					5	4	2	0	0	0	0.60917	1	41074	41074		13.906	0	1	487910	+		16032	22750	11614	11703	15678	15678					0.04130046822888289
FVAWLLEI	8	Unmodified	_FVAWLLEI_					0	0	0		ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-3|PREX1	ENSG00000124126|ENST00000371941|PREX1	ENSG00000124126|ENST00000371941|PREX1	MULTI-MSMS	A375_MHC_IP_R2	2	496.18438720703125	2	495.786579	989.558604	-0.5239	-0.00025974	-1.9654	-0.00097441	-2.4893	-0.0012342	495.78459364056914	106.69	0.7123	107.45	106.94	107.65	0.75977					20	13	2	0	0	0	0.70179	1	40316	40316		34.187	2.0704	1	1300700			16033	3870	11615	11704	15679	15679					0.0634073394232928
FVDADGDQY	9	Unmodified	_FVDADGDQY_					0	0	0			REV__nc|ENSG00000163687|Q13609-2|DNASE1L3	REV__nc|ENSG00000163687|Q13609-2|DNASE1L3	MSMS	A375_MHC_IP_R2	2	515.1553955078125	2	515.211629	1028.40871	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.047	1	65.785	65.285	66.285	0.73811								0	0	0	0.15486	1	24663	24663		8.5933	0.68312	1		+		16034	20398	11616	11705	15680	15680					-0.10436282858086088
FVDDYTVRV	9	Unmodified	_FVDDYTVRV_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	A375_MHC_IP_R1	1	557.682373046875	2	557.282389	1112.55022	-0.74333	-0.00041425	0.33572	0.00018709	-0.40761	-0.00022716	557.2825325339434	66.503	1.1227	66.503	66.122	67.245	0					64	21	4	0	0	0	0.020087	1	24046	24046		83.429	49.027	1	38587000			16035	3285	11617	11706	15681	15681					-0.0015486476497699186
FVDDYTVRV	9	Unmodified	_FVDDYTVRV_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	A375_MHC_IP_R2	2	557.6812744140625	2	557.282389	1112.55022	-0.95279	-0.00053097	0.17881	9.9647E-05	-0.77398	-0.00043133	557.2824571993215	65.762	1.1212	66.5	66.069	67.191	0.73811					67	21	4	0	0	0	0.068071	1	24874	24874		57.249	22.847	1	43624000			16036	3285	11617	11706	15682	15682					-0.0015486476497699186
FVDGISSHDL	10	Unmodified	_FVDGISSHDL_					0	0	0		ENSG00000149260|ENST00000648180|CAPN5	ENSG00000149260|ENST00000648180|CAPN5	ENSG00000149260|ENST00000648180|CAPN5	MULTI-MSMS	A375_MHC_IP_R1	1	545.7777709960938	2	545.264196	1088.51384	-0.30547	-0.00016656	1.3748	0.00074963	1.0693	0.00058307	545.2646833182508	107.55	0.61361	107.55	107.29	107.9	0					24	11	3	0	0	0	0.62155	1	39546	39546		19.257	4.4187	1	2142400			16037	5793	11618	11707	15683	15683					-0.026877416616798655
FVDGLTFKV	9	Unmodified	_FVDGLTFKV_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-MSMS	A375_MHC_IP_R1	1	513.6873779296875	2	513.286943	1024.55933	-0.58382	-0.00029967	0.49124	0.00025215	-0.09258	-4.752E-05	513.287201633792	95.338	1.0619	95.338	94.956	96.018	0					36	20	3	0	0	0	0.02114	1	35026	35026		82.529	42.572	1	5574500			16038	6139	11619	11708	15684	15684					0.04803528591378381
FVDGLTFKV	9	Unmodified	_FVDGLTFKV_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-SECPEP	A375_MHC_IP_R2	2	513.686767578125	2	513.286943	1024.55933	-0.52683	-0.00027042	0.29795	0.00015293	-0.22888	-0.00011748	513.287051204225	94.504	0.60725	95.249	95.02	95.627	0.74474					26	11	3	0	0	0	0.10362	1	35899	35899		63.961	33.324	1	5345600			16039	6139	11619	11708	15685	15685					0.04803528591378381
FVDKKELF	8	Unmodified	_FVDKKELF_					0	0	0			REV__tr|U7T539|U7T539_FUSNUTetratricopeptiderepeatfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00425PE=4SV=1	REV__tr|U7T539|U7T539_FUSNUTetratricopeptiderepeatfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00425PE=4SV=1	MSMS	A375_MHC_IP_R2	2	513.454345703125	2	513.286943	1024.55933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.955	1	95.705	95.205	96.205	0.75007								0	0	0	0.16876	1	36077	36077		28.487	4.4663	1		+		16040	28818	11620	11709	15686	15686					0.04803528591378381
FVDKNNDLLY	10	Unmodified	_FVDKNNDLLY_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;MYO1B|p.L1009Pfs*6|1|0.14|ENSG00000128641|chr2:191414529-191414530|-/T|frameshift_variant;ENSG00000128641|ENST00000392318|MYO1B;ENST00000494129.1_1_2:192246088-192252282:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-SECPEP	A375_MHC_IP_R1	1	621.2134399414062	2	620.814053	1239.61355	-0.33648	-0.00020889	0.18384	0.00011413	-0.15263	-9.4756E-05	620.814061738116	62.274	0.86862	62.274	61.994	62.863	0					43	16	4	0	0	0	0.043964	1	22446	22446		100.71	56.936	1	16513000			16041	14591	11621	11710	15687	15687					0.0033307595228961873
FVDKNNDLLY	10	Unmodified	_FVDKNNDLLY_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;MYO1B|p.L1009Pfs*6|1|0.14|ENSG00000128641|chr2:191414529-191414530|-/T|frameshift_variant;ENSG00000128641|ENST00000392318|MYO1B;ENST00000494129.1_1_2:192246088-192252282:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-SECPEP	A375_MHC_IP_R2	2	621.2139282226562	2	620.814053	1239.61355	-1.0388	-0.0006449	0.13055	8.1049E-05	-0.90824	-0.00056385	620.8140242864373	61.553	0.80622	62.298	61.97	62.776	0.74504					46	15	4	0	0	0	0.027024	1	23280	23280		107.1	67.15	1	14282000			16042	14591	11621	11710	15688	15688					0.0033307595228961873
FVDKPVAY	8	Unmodified	_FVDKPVAY_					0	0	0		nc|ENSG00000115750|Q53T94-3|TAF1B;ENSG00000115750|ENST00000263663|TAF1B;nc|ENSG00000115750|Q53T94-2|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	MULTI-SECPEP	A375_MHC_IP_R1	1	470.1522521972656	2	469.752736	937.490919	-0.6342	-0.00029792	0.91764	0.00043106	0.28344	0.00013315	469.7531613957469	41.616	0.96678	41.616	41.419	42.386	0					30	18	3	0	0	0	0.28442	1	14379	14379		78.728	31.807	1	8396000			16043	3334	11622	11711	15689	15689					0.019672840115163126
FVDKPVAY	8	Unmodified	_FVDKPVAY_					0	0	0		nc|ENSG00000115750|Q53T94-3|TAF1B;ENSG00000115750|ENST00000263663|TAF1B;nc|ENSG00000115750|Q53T94-2|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	MULTI-MSMS	A375_MHC_IP_R2	2	470.1522521972656	2	469.752736	937.490919	-0.83109	-0.00039041	0.32128	0.00015092	-0.50981	-0.00023949	469.7527448502239	40.892	0.55899	41.667	41.438	41.997	0.77451					23	10	3	0	0	0	0.2858	1	15161	15161		60.074	15.667	1	7931000			16044	3334	11622	11711	15690	15690					0.019672840115163126
FVDMGHSAY	9	Unmodified	_FVDMGHSAY_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-SECPEP	A375_MHC_IP_R2	2	514.1201782226562	2	513.72111	1025.42767	-0.86803	-0.00044592	0.13158	6.7593E-05	-0.73645	-0.00037833	513.7211946096846	44.986	0.56122	45.755	45.39	45.951	0.7691					15	10	2	0	0	0	0.43707	1	16841	16841		36.044	0	1	2759400			16045	7525	11623	11712	15691	15691					-0.08403024768017531
FVDPLVTNY	9	Unmodified	_FVDPLVTNY_					0	0	0		nc|ENSG00000043514|Q9H3H1-4|TRIT1;ENSG00000043514|ENST00000316891|TRIT1;ENST00000486825.6_1_1:40315918-40341739:-|nuORF;ENST00000462243.2_1_1:40318401-40323020:-|nuORF	nc|ENSG00000043514|Q9H3H1-4|TRIT1	nc|ENSG00000043514|Q9H3H1-4|TRIT1	MULTI-SECPEP	A375_MHC_IP_R1	1	534.673583984375	2	534.274032	1066.53351	-0.4309	-0.00023022	-0.021517	-1.1496E-05	-0.45242	-0.00024171	534.2739456449921	107.58	1.8792	107.58	107.19	109.07	0					88	36	4	0	0	0	0.03109	1	39399	39399		72.968	36.841	1	37329000			16046	1181	11624	11713	15692	15692					0.0029063434908493946
FVDPLVTNY	9	Unmodified	_FVDPLVTNY_					0	0	0		nc|ENSG00000043514|Q9H3H1-4|TRIT1;ENSG00000043514|ENST00000316891|TRIT1;ENST00000486825.6_1_1:40315918-40341739:-|nuORF;ENST00000462243.2_1_1:40318401-40323020:-|nuORF	nc|ENSG00000043514|Q9H3H1-4|TRIT1	nc|ENSG00000043514|Q9H3H1-4|TRIT1	MULTI-SECPEP	A375_MHC_IP_R2	2	534.6737060546875	2	534.274032	1066.53351	-0.85002	-0.00045415	-0.035795	-1.9124E-05	-0.88582	-0.00047327	534.2739612928273	106.81	2.2412	107.57	107.14	109.38	0.75977					92	43	4	0	0	0	0.010788	1	40294	40294		142.08	89.811	1	43952000			16047	1181	11624	11713	15693	15693					0.0029063434908493946
FVDPNGKISL	10	Unmodified	_FVDPNGKISL_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-SECPEP	A375_MHC_IP_R2	2	545.68798828125	2	545.300581	1088.58661	-0.7675	-0.00041852	0.31236	0.00017033	-0.45514	-0.00024819	545.802196926165	67.571	0.45792	68.307	68.104	68.562	0.73631					12	8	2	0	0	0	0.44315	1	25637	25637		39.213	0	1	2223600			16048	14531	11625	11714	15694	15694					0.045860121317673475
FVDPYPVNKY	10	Unmodified	_FVDPYPVNKY_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MULTI-MSMS	A375_MHC_IP_R1	1	621.8969116210938	2	621.313689	1240.61282	-0.45148	-0.00028051	0.388	0.00024107	-0.063482	-3.9442E-05	621.31383527273	64.047	0.70902	64.047	63.786	64.495	0					35	13	3	0	0	0	0.040521	1	23187	23187		100.09	65.689	1	11103000			16049	7848	11626	11715	15695	15695					0.002142813032378399
FVDPYPVNKY	10	Unmodified	_FVDPYPVNKY_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MULTI-MSMS	A375_MHC_IP_R2	2	621.7130126953125	2	621.313689	1240.61282	-0.67349	-0.00041845	-0.037247	-2.3142E-05	-0.71074	-0.00044159	621.3135743340365	63.374	0.7111	64.114	63.785	64.496	0.74022					35	13	4	0	0	0	0.021084	1	23992	23992		107.1	85.563	1	8986100			16050	7848	11626	11715	15696	15696					0.002142813032378399
FVDVAQSTY	9	Unmodified	_FVDVAQSTY_					0	0	0		ENSG00000187231|ENST00000428443|SESTD1	ENSG00000187231|ENST00000428443|SESTD1	ENSG00000187231|ENST00000428443|SESTD1	MULTI-SECPEP	A375_MHC_IP_R2	2	515.1553955078125	2	515.248015	1028.48148	-0.78823	-0.00040613	1.5431	0.00079507	0.75486	0.00038894	515.2489171444552	65.015	0.60964	65.753	65.308	65.917	0.73811					17	11	2	0	0	0	0.34746	1	24663	24663		45.7	28.757	1	1599700			16051	8813	11627	11716	15697	15697					-0.03162529064638875
FVDVAQSTY	9	Unmodified	_FVDVAQSTY_					0	0	0		ENSG00000187231|ENST00000428443|SESTD1	ENSG00000187231|ENST00000428443|SESTD1	ENSG00000187231|ENST00000428443|SESTD1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	515.248015	1028.48148	-0.65432	-0.00033714	1.8618	0.00095927	1.2074	0.00062213	515.2490371573679	65.586	0.40828	65.586	65.411	65.819	0	-0.083876	7.5095E-05	NaN	45.7	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1011400			16052	8813	11627	11716							-0.03162529064638875
FVDYAQKNGY	10	Unmodified	_FVDYAQKNGY_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2;ABHD2|p.R156W|1|0.45|ENSG00000140526|chr15:89155462-89155462|C/T|missense_variant	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-MSMS	A375_MHC_IP_R1	1	603.1851806640625	2	602.785296	1203.55604	-0.57486	-0.00034652	0.39183	0.00023619	-0.18302	-0.00011032	602.7855357551018	39.871	0.6616	39.871	39.541	40.203	0					26	12	3	0	0	0	2.8699E-05	1	13649	13649		160.69	114.99	1	8646500			16053	5163	11628	11717	15698	15698					-0.0375976625327894
FVDYAQKNGY	10	Unmodified	_FVDYAQKNGY_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2;ABHD2|p.R156W|1|0.45|ENSG00000140526|chr15:89155462-89155462|C/T|missense_variant	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-SECPEP	A375_MHC_IP_R2	2	603.1846923828125	2	602.785296	1203.55604	-0.59897	-0.00036105	-0.21286	-0.00012831	-0.81183	-0.00048936	602.7852031331307	39.233	0.66217	40.007	39.76	40.422	0.77451					24	12	3	0	0	0	0.011428	1	14461	14461		128.57	103.58	1	9378200			16054	5163	11628	11717	15699	15699					-0.0375976625327894
FVELPAFVT	9	Unmodified	_FVELPAFVT_					0	0	0			REV__ENSG00000143324|ENST00000367590|XPR1	REV__ENSG00000143324|ENST00000367590|XPR1	MULTI-SECPEP	A375_MHC_IP_R1	1	511.1972351074219	2	511.781493	1021.54843	-0.23123	-0.00011834	-2.5611	-0.0013107	-2.7923	-0.0014291	511.77938305537737	107.42	0.30588	107.42	107.14	107.44	0					8	5	2	0	0	0	0.55359	1	39420	39420		21.747	0	1	572410	+		16055	19346	11629	11718	15700	15700					0.03852126217100249
FVEPVGLNY	9	Unmodified	_FVEPVGLNY_					0	0	0		nc|ENSG00000161533|Q15067|ACOX1	nc|ENSG00000161533|Q15067|ACOX1	nc|ENSG00000161533|Q15067|ACOX1	MULTI-SECPEP	A375_MHC_IP_R1	1	519.6686401367188	2	519.26875	1036.52295	-0.46261	-0.00024022	0.34669	0.00018003	-0.11592	-6.0192E-05	519.2688782319185	97.979	0.45564	97.979	97.845	98.3	0					16	8	3	0	0	0	0.24548	1	36021	36021		29.082	10.935	1	2201000			16056	14715	11630	11719	15701	15701					0.006146516946728298
FVEPVGLNY	9	Unmodified	_FVEPVGLNY_					0	0	0		nc|ENSG00000161533|Q15067|ACOX1	nc|ENSG00000161533|Q15067|ACOX1	nc|ENSG00000161533|Q15067|ACOX1	MULTI-MATCH	A375_MHC_IP_R2	2		2	519.26875	1036.52295	-0.86221	-0.00044772	0.51737	0.00026866	-0.34484	-0.00017906	519.2689507591688	97.267	0.55977	98.023	97.771	98.331	0.75586	0.021866	0.00012168	NaN	29.082	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1279500			16057	14715	11630	11719							0.006146516946728298
FVETESVRY	9	Unmodified	_FVETESVRY_					0	0	0		ENSG00000095139|ENST00000264028|ARCN1;ARCN1|p.G229Efs*7|1|0.26|ENSG00000095139|chr11:118584509-118584509|T/-|frameshift_variant	ENSG00000095139|ENST00000264028|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	MULTI-MSMS	A375_MHC_IP_R1	1	565.6793212890625	2	565.279846	1128.54514	-0.3381	-0.00019112	0.031839	1.7998E-05	-0.30626	-0.00017312	565.2798162973929	43.578	1.3258	43.578	43.197	44.523	0					58	25	4	0	0	0	0.0099737	1	15126	15126		96.367	58.393	1	35918000			16058	2036	11631	11720	15702	15702					-0.013991686275403481
FVETESVRY	9	Unmodified	_FVETESVRY_					0	0	0		ENSG00000095139|ENST00000264028|ARCN1;ARCN1|p.G229Efs*7|1|0.26|ENSG00000095139|chr11:118584509-118584509|T/-|frameshift_variant	ENSG00000095139|ENST00000264028|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	MULTI-MSMS	A375_MHC_IP_R2	2	565.6793212890625	2	565.279846	1128.54514	-0.36717	-0.00020755	-0.17413	-9.843E-05	-0.54129	-0.00030598	565.279718490838	42.876	1.0641	43.649	43.218	44.282	0.7724					55	20	5	0	0	0	0.0094639	2	15964	15897;15964		106.94	68.966	1	31470000			16059	2036	11631	11720	15703;15704	15704					-0.013991686275403481
FVFCFWGPE	9	Unmodified	_FVFCFWGPE_					0	0	0			REV__ACCS|p.R457C|1|0.11|ENSG00000110455|chr11:44083538-44083538|C/T|missense_variant	REV__ACCS|p.R457C|1|0.11|ENSG00000110455|chr11:44083538-44083538|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	566.6503295898438	2	566.252046	1130.48954	-0.40096	-0.00022705	-1.2133	-0.00068702	-1.6142	-0.00091406	566.2512746381859	33.401	0.35711	33.401	33.19	33.547	0					10	6	2	0	0	0	0.63811	1	10907	10907		12.532	1.7076	1	2141700	+		16060	15293	11632	11721	15705	15705					-0.07048673348890588
FVFKLLLHRP	10	Unmodified	_FVFKLLLHRP_					0	0	0		ENSG00000086189|ENST00000199320|DIMT1;ENST00000509182.1_1_5:61688751-61699599:-|nuORF	ENSG00000086189|ENST00000199320|DIMT1	ENSG00000086189|ENST00000199320|DIMT1	MSMS	A375_MHC_IP_R2	2	635.7962036132812	2	635.395151	1268.77575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.66	1	146.68	146.18	147.18	0.019913								0	0	0	0.15631	1	57105	57105		0.35063	0.081612	1				16061	1830	11633	11722	15706	15706					0.1521112921573149
FVFPGELLL	9	Unmodified	_FVFPGELLL_					0	0	0		ENSG00000105281|ENST00000542575|SLC1A5	ENSG00000105281|ENST00000542575|SLC1A5	ENSG00000105281|ENST00000542575|SLC1A5	MULTI-MSMS	A375_MHC_IP_R1	1	1034.33984375	1	1034.5921	1033.58482	-0.12768	-0.00013209	0.16905	0.0001749	0.041375	4.2806E-05	1034.5922281940939	135.92	1.899	135.92	135.64	137.54	0					76	36	5	0	0	0	0.011892	1	52478	52478		93.883	45.538	1	196610000			16062	2584	11634	11723	15707	15707					0.06937003113830542
FVFPGELLL	9	Unmodified	_FVFPGELLL_					0	0	0		ENSG00000105281|ENST00000542575|SLC1A5	ENSG00000105281|ENST00000542575|SLC1A5	ENSG00000105281|ENST00000542575|SLC1A5	MULTI-MSMS	A375_MHC_IP_R1	1	518.7345581054688	2	517.799686	1033.58482	-0.82041	-0.00042481	0.014273	7.3907E-06	-0.80614	-0.00041742	517.7997334364873	135.95	3.2765	135.95	135.34	138.61	0					127	63	4	0	0	0	0.69674	1	52579	52579		7.2892	0	1	229630000			16063	2584	11634	11723	15708	15708					0.06937003113830542
FVFPGELLL	9	Unmodified	_FVFPGELLL_					0	0	0		ENSG00000105281|ENST00000542575|SLC1A5	ENSG00000105281|ENST00000542575|SLC1A5	ENSG00000105281|ENST00000542575|SLC1A5	MULTI-MSMS	A375_MHC_IP_R2	2	518.734619140625	2	517.799686	1033.58482	-0.57968	-0.00030016	0.0051308	2.6567E-06	-0.57455	-0.0002975	517.7997506306144	135.8	2.6033	135.91	134.52	137.12	0.11134					152	50	6	0	0	0	0.69674	1	53593	53593		7.2892	7.2892	1	252310000			16064	2584	11634	11723	15709	15709					0.06937003113830542
FVFPGELLL	9	Unmodified	_FVFPGELLL_					0	0	0		ENSG00000105281|ENST00000542575|SLC1A5	ENSG00000105281|ENST00000542575|SLC1A5	ENSG00000105281|ENST00000542575|SLC1A5	MULTI-MSMS	A375_MHC_IP_R2	2	1034.9930419921875	1	1034.5921	1033.58482	0.18805	0.00019456	0.038202	3.9524E-05	0.22626	0.00023408	1034.592117199634	135.8	1.3839	135.91	135.69	137.07	0.11134					47	26	2	0	0	0	0.4867	1	53746	53746		20.454	9.6297	1	224660000			16065	2584	11634	11723	15710	15710					0.06937003113830542
FVFPLVFIC	9	Unmodified	_FVFPLVFIC_					0	0	0			REV__ENST00000528156.1_1_11:82783495-82784356:+|nuORF	REV__ENST00000528156.1_1_11:82783495-82784356:+|nuORF	MSMS	A375_MHC_IP_R2	2	542.6279296875	2	542.798632	1083.58271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.804	1	18.4	17.9	18.9	0.59616								0	0	0	0.15486	1	5257	5257		0	0	1		+		16066	25800	11635	11724	15711	15711					0.044262511043825725
FVFSPFLSL	9	Unmodified	_FVFSPFLSL_					0	0	0		ENST00000373204.5_1_1:36387703-36387838:+|nuORF	ENST00000373204.5_1_1:36387703-36387838:+|nuORF	ENST00000373204.5_1_1:36387703-36387838:+|nuORF	MSMS	A375_MHC_IP_R2	2	528.6928100585938	2	528.791861	1055.56917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.08	1	136.19	135.69	136.69	0.11134								0	0	0	0.15486	1	53469	53469		7.2892	0	1				16067	11226	11636	11725	15712	15712					0.04360716596761449
FVFYVEYV	8	Unmodified	_FVFYVEYV_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-SECPEP	A375_MHC_IP_R1	1	533.9707641601562	2	533.268219	1064.52188	-0.26187	-0.00013965	-4.0743	-0.0021727	-4.3362	-0.0023123	533.7678456679761	39.008	0.50804	39.008	38.679	39.187	0					11	9	2	0	0	0	0.97144	1	13323	13323		14.582	11.3	1	1163300	+		16068	17416	11637	11726	15713	15713					-0.0077956267425634
FVGQVKATDPD	11	Unmodified	_FVGQVKATDPD_					0	0	0		nc|ENSG00000150275|Q96QU1-6|PCDH15;ENSG00000150275|ENST00000644397|PCDH15;nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15;nc|ENSG00000150275|Q96QU1-3|PCDH15	nc|ENSG00000150275|Q96QU1-6|PCDH15	nc|ENSG00000150275|Q96QU1-6|PCDH15	MULTI-SECPEP	A375_MHC_IP_R2	2	393.6155700683594	3	392.868027	1175.58225	-0.14579	-5.7276E-05	1.4761	0.0005799	1.3303	0.00052263	393.2033104470656	41.961	0.86932	42.736	42.35	43.22	0.77451					22	16	2	0	0	0	0.94168	1	15467	15467		12.228	5.6041	1	1721700			16069	5839	11638	11727	15714	15714					0.0014850291818220285
FVHDEPWAM	9	Unmodified	_FVHDEPWAM_					0	0	0			REV__ENSG00000213398|ENST00000264005|LCAT	REV__ENSG00000213398|ENST00000264005|LCAT	MULTI-MSMS	A375_MHC_IP_R2	2	566.650634765625	2	566.250034	1130.48552	-0.47981	-0.00027169	1.3407	0.00075917	0.86088	0.00048748	566.2508353677514	32.706	0.45779	33.443	33.213	33.671	0.73692					11	8	2	0	0	0	0.5339	1	11706	11706		18.135	2.2878	1	2866200	+		16070	22621	11639	11728	15715	15715					-0.07450762842609038
FVHDEPWAM	9	Unmodified	_FVHDEPWAM_					0	0	0			REV__ENSG00000213398|ENST00000264005|LCAT	REV__ENSG00000213398|ENST00000264005|LCAT	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	566.250034	1130.48552	-0.40096	-0.00022705	2.3388	0.0013244	1.9379	0.0010973	566.2512746381859	33.401	0.35711	33.401	33.19	33.547	0	-0.020785	0.00056204	NaN	18.135	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2141700	+		16071	22621	11639	11728							-0.07450762842609038
FVHDLVLYL	9	Unmodified	_FVHDLVLYL_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	A375_MHC_IP_R1	1	560.7174072265625	2	559.815867	1117.61718	-0.62905	-0.00035215	0.0076935	4.307E-06	-0.62136	-0.00034784	559.8157049713677	119.83	0.71014	119.83	119.54	120.25	0					22	13	3	0	0	0	0.29123	1	44343	44343		42.095	7.9921	1	13767000			16072	5230;1491	11640	11729	15716	15716					0.06307790516780187
FVHDLVLYL	9	Unmodified	_FVHDLVLYL_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	A375_MHC_IP_R2	2	560.2156982421875	2	559.815867	1117.61718	-0.58153	-0.00032555	-0.078084	-4.3713E-05	-0.65962	-0.00036926	559.8157281435829	118.77	0.70937	119.38	119.05	119.76	0.60909					23	13	3	0	0	0	0.082375	1	45156	45156		70.716	26.309	1	24127000			16073	5230;1491	11640	11729	15717	15717					0.06307790516780187
FVHDLVLYL	9	Unmodified	_FVHDLVLYL_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	559.815867	1117.61718	-0.62905	-0.00035215	0.0076935	4.307E-06	-0.62136	-0.00034784	559.8157049713677	119.83	0.71014	119.83	119.54	120.25	0	0	0	NaN	42.095	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13767000			16074	5230;1491	11640	11729							0.06307790516780187
FVHNKGMII	9	Unmodified	_FVHNKGMII_					0	0	0			REV__ENSG00000054523|ENST00000676179|KIF1B	REV__ENSG00000054523|ENST00000676179|KIF1B	MULTI-SECPEP	A375_MHC_IP_R2	2	530.4584350585938	2	529.794412	1057.57427	-0.43303	-0.00022942	-1.2357	-0.00065466	-1.6687	-0.00088408	529.7938297044388	135.81	0.31018	135.92	135.79	136.1	0.11134					7	5	2	0	0	0	0.62767	1	53352	53352		16.942	5.8278	1	2733700	+		16075	16404	11641	11730	15718	15718					0.04778697187725811
FVHSPLDMGH	10	Unmodified	_FVHSPLDMGH_					0	0	0		RTTN|p.S349F|1|0.14|ENSG00000176225|chr18:70190681-70190681|G/A|missense_variant	RTTN|p.S349F|1|0.14|ENSG00000176225|chr18:70190681-70190681|G/A|missense_variant	RTTN|p.S349F|1|0.14|ENSG00000176225|chr18:70190681-70190681|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	570.6896362304688	2	570.268758	1138.52296	-0.208	-0.00011861	2.0569	0.001173	1.8489	0.0010543	570.2698096209747	68.848	2.893	69.583	68.51	71.403	0.73512					78	56	3	0	0	0	0.70496	1	25814	25814		10.074	0.72649	1	2473600			16076	29099	11642	11731	15719	15719					-0.04075671576970308
FVIAELVNV	9	Unmodified	_FVIAELVNV_					0	0	0		ENSG00000272047|ENST00000607778|GTF2H5	ENSG00000272047|ENST00000607778|GTF2H5	ENSG00000272047|ENST00000607778|GTF2H5	MULTI-MSMS	A375_MHC_IP_R2	2	502.6946716308594	2	502.294768	1002.57498	-0.65905	-0.00033104	-0.31383	-0.00015763	-0.97287	-0.00048867	502.294541582485	129.6	0.30261	129.84	129.72	130.02	0.23946					10	5	2	0	0	0	0.010057	1	50934	50934		125.62	54.909	1	23278000			16077	9989	11643	11732	15720	15720					0.07379815108424737
FVIIECMVV	9	Unmodified	_FVIIECMVV_					0	0	0			REV__ENST00000610036.1_1_2:105953583-105953844:-|nuORF	REV__ENST00000610036.1_1_2:105953583-105953844:-|nuORF	MSMS	A375_MHC_IP_R1	1	526.6773681640625	2	526.779582	1051.54461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.47	1	128.47	127.97	128.97	0								0	0	0	0.15283	1	49337	49337		16.942	0	1		+		16078	26574	11644	11733	15721	15721					0.02089997127359311
FVIRNIVEA	9	Unmodified	_FVIRNIVEA_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000465478.1_1_8:93156318-93156576:-|nuORF;ENST00000447425.1_1_7:22813267-22813561:-|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-SECPEP	A375_MHC_IP_R1	1	531.2105712890625	2	530.811116	1059.60768	-0.66682	-0.00035396	-0.0039942	-2.1202E-06	-0.67082	-0.00035608	530.8110871187686	76.853	0.91498	76.853	76.673	77.588	0					29	17	2	0	0	0	0.10362	1	28024	28024		72.968	21.338	1	9746900			16079	9189	11645	11734	15722	15722					0.08026022231297247
FVIRNIVEA	9	Unmodified	_FVIRNIVEA_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000465478.1_1_8:93156318-93156576:-|nuORF;ENST00000447425.1_1_7:22813267-22813561:-|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-SECPEP	A375_MHC_IP_R2	2	530.6598510742188	2	530.811116	1059.60768	-0.61803	-0.00032806	0.10315	5.4754E-05	-0.51488	-0.0002733	530.8111066070829	76.088	1.0648	76.829	76.436	77.501	0.74052					39	19	3	0	0	0	0.27742	1	28916	28916		43.772	19.752	1	9690800			16080	9189	11645	11734	15723	15723					0.08026022231297247
FVITFPRAY	9	Unmodified	_FVITFPRAY_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENST00000465402.1_1_X:53230656-53239709:-|nuORF;ENST00000492117.1_1_Y:21877982-21883284:-|nuORF;ENST00000481369.1_1_X:53230656-53231176:-|nuORF;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;ENST00000497100.5_1_X:53227940-53240837:-|nuORF;nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D	ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000126012|P41229-2|KDM5C	MULTI-SECPEP	A375_MHC_IP_R1	1	557.7081909179688	2	557.30821	1112.60187	-0.49447	-0.00027557	0.15805	8.8084E-05	-0.33642	-0.00018749	557.3083742909762	103.02	0.8149	103.02	102.71	103.52	0					32	15	3	0	0	0	0.53098	1	37848	37848		36.127	16.87	1	3402800			16081	4020;3458;1013	11646	11735	15724	15724					0.050069237196112226
FVITFPRAY	9	Unmodified	_FVITFPRAY_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENST00000465402.1_1_X:53230656-53239709:-|nuORF;ENST00000492117.1_1_Y:21877982-21883284:-|nuORF;ENST00000481369.1_1_X:53230656-53231176:-|nuORF;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;ENST00000497100.5_1_X:53227940-53240837:-|nuORF;nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D	ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000126012|P41229-2|KDM5C	MULTI-SECPEP	A375_MHC_IP_R2	2	557.7073364257812	2	557.30821	1112.60187	-0.74491	-0.00041514	0.24037	0.00013396	-0.50454	-0.00028118	557.3083095723046	102.19	0.76166	102.95	102.62	103.38	0.76428					28	14	3	0	0	0	0.13244	1	38712	38712		56.177	56.177	1	3644200			16082	4020;3458;1013	11646	11735	15725	15725					0.050069237196112226
FVKDKIFAV	9	Unmodified	_FVKDKIFAV_					0	0	0		ENSG00000122550|ENST00000339077|KLHL7;nc|ENSG00000122550|Q8IXQ5-5|KLHL7;nc|ENSG00000122550|Q8IXQ5-2|KLHL7	ENSG00000122550|ENST00000339077|KLHL7	ENSG00000122550|ENST00000339077|KLHL7	MULTI-MSMS	A375_MHC_IP_R1	1	356.61444091796875	3	356.214699	1065.62227	0.0034697	1.2359E-06	-0.19307	-6.8776E-05	-0.18961	-6.754E-05	356.21456962328443	59.285	0.86343	59.285	59.041	59.905	0					34	16	3	0	0	0	0.41879	1	21302	21302		23.79	14.246	1	11236000			16083	3790	11647	11736	15726	15726					0.09208094379414433
FVKDKIFAV	9	Unmodified	_FVKDKIFAV_					0	0	0		ENSG00000122550|ENST00000339077|KLHL7;nc|ENSG00000122550|Q8IXQ5-5|KLHL7;nc|ENSG00000122550|Q8IXQ5-2|KLHL7	ENSG00000122550|ENST00000339077|KLHL7	ENSG00000122550|ENST00000339077|KLHL7	MULTI-SECPEP	A375_MHC_IP_R1	1	534.2178344726562	2	533.81841	1065.62227	-0.67501	-0.00036033	0.12844	6.8563E-05	-0.54657	-0.00029177	533.8184023151476	59.277	0.40621	59.277	59.041	59.448	0					16	7	3	0	0	0	0.14606	1	21307	21307		55.503	15.545	1	5127900			16084	3790	11647	11736	15727	15727					0.09208094379414433
FVKDKIFAV	9	Unmodified	_FVKDKIFAV_					0	0	0		ENSG00000122550|ENST00000339077|KLHL7;nc|ENSG00000122550|Q8IXQ5-5|KLHL7;nc|ENSG00000122550|Q8IXQ5-2|KLHL7	ENSG00000122550|ENST00000339077|KLHL7	ENSG00000122550|ENST00000339077|KLHL7	MULTI-MSMS	A375_MHC_IP_R2	2	356.6144714355469	3	356.214699	1065.62227	-0.51667	-0.00018404	0.07871	2.8038E-05	-0.43796	-0.00015601	356.21463700750087	58.36	0.86378	59.109	58.779	59.643	0.74894					41	16	4	0	0	0	0.26169	1	22030	22030		33.445	4.9504	1	11739000			16085	3790	11647	11736	15728	15728					0.09208094379414433
FVKDKIFAV	9	Unmodified	_FVKDKIFAV_					0	0	0		ENSG00000122550|ENST00000339077|KLHL7;nc|ENSG00000122550|Q8IXQ5-5|KLHL7;nc|ENSG00000122550|Q8IXQ5-2|KLHL7	ENSG00000122550|ENST00000339077|KLHL7	ENSG00000122550|ENST00000339077|KLHL7	MULTI-SECPEP	A375_MHC_IP_R2	2	533.6942749023438	2	533.81841	1065.62227	-1.0567	-0.00056406	0.080996	4.3237E-05	-0.97566	-0.00052083	533.8183349376236	58.265	0.35735	59.014	58.829	59.187	0.74894					16	6	3	0	0	0	0.37663	1	22023	22023		13.615	0	1	3597000			16086	3790	11647	11736	15729	15729					0.09208094379414433
FVKDSIRLV	9	Unmodified	_FVKDSIRLV_					0	0	0		ENSG00000132432|ENST00000352861|SEC61G;ENST00000460484.5_1_7:54823470-54826890:-|nuORF	ENSG00000132432|ENST00000352861|SEC61G	ENSG00000132432|ENST00000352861|SEC61G	MULTI-MSMS	A375_MHC_IP_R1	1	359.95355224609375	3	359.553603	1075.63898	0.0016523	5.9408E-07	-0.28862	-0.00010377	-0.28696	-0.00010318	359.5534357371695	53.169	1.2672	53.169	52.796	54.063	0					41	24	3	0	0	0	0.016157	1	18924	18924		88.364	40.632	1	8549600			16087	4407	11648	11737	15730	15730					0.1041859526535518
FVKDSIRLV	9	Unmodified	_FVKDSIRLV_					0	0	0		ENSG00000132432|ENST00000352861|SEC61G;ENST00000460484.5_1_7:54823470-54826890:-|nuORF	ENSG00000132432|ENST00000352861|SEC61G	ENSG00000132432|ENST00000352861|SEC61G	MULTI-MSMS	A375_MHC_IP_R2	2	359.9533386230469	3	359.553603	1075.63898	-0.59477	-0.00021385	-0.037201	-1.3376E-05	-0.63197	-0.00022723	359.5535049352968	52.32	0.60747	53.072	52.729	53.336	0.75225					29	11	4	0	0	0	0.0097279	1	19686	19686		111.31	65.287	1	7149300			16088	4407	11648	11737	15731	15731					0.1041859526535518
FVKFLWILFRQ	11	Unmodified	_FVKFLWILFRQ_					0	0	0		ENST00000409645.5_1_2:135211449-135211605:+|nuORF	ENST00000409645.5_1_2:135211449-135211605:+|nuORF	ENST00000409645.5_1_2:135211449-135211605:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	749.3418579101562	2	748.942465	1495.87038	-0.87273	-0.00065363	-0.016678	-1.2491E-05	-0.88941	-0.00066612	748.9423798418948	142.4	0.50513	142.4	142.03	142.54	0					25	9	3	0	0	0	0.73902	1	54579	54579		0.30703	0	1	4304100			16089	11638	11649	11738	15732	15732					0.14227642967057363
FVKGVWKKT	9	Unmodified	_FVKGVWKKT_					0	0	0		CD96|p.E24K|5|0.21|ENSG00000153283|chr3:111545054-111545054|G/A|missense_variant	CD96|p.E24K|5|0.21|ENSG00000153283|chr3:111545054-111545054|G/A|missense_variant	CD96|p.E24K|5|0.21|ENSG00000153283|chr3:111545054-111545054|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	364.9170837402344	3	364.890327	1091.64915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.439	1	19.439	18.939	19.939	0								0	0	0	0.15486	1	4822	4822		7.609	1.4032	1				16090	340	11650	11739	15733	15733					0.10699202990599588
FVKKLEHSW	9	Unmodified	_FVKKLEHSW_					0	0	0		nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;ENSG00000143398|ENST00000368888|PIP5K1A;nc|ENSG00000143398|Q99755-2|PIP5K1A;ENST00000486866.1_1_1:151209168-151212598:+|nuORF;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF	nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000180764|A2A3N6|PIPSL	nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-SECPEP	A375_MHC_IP_R1	1	392.285400390625	3	391.885353	1172.63423	-0.21832	-8.5558E-05	0.23491	9.2056E-05	0.016582	6.4982E-06	391.8853477116647	29.101	0.35717	29.101	28.895	29.252	0					11	6	2	0	0	0	0.028087	1	9084	9084		79.427	65.022	1	5013700			16091	12500;5384	11651	11740	15734	15734					0.05481711122615707
FVKKLEHSW	9	Unmodified	_FVKKLEHSW_					0	0	0		nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;ENSG00000143398|ENST00000368888|PIP5K1A;nc|ENSG00000143398|Q99755-2|PIP5K1A;ENST00000486866.1_1_1:151209168-151212598:+|nuORF;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF	nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000180764|A2A3N6|PIPSL	nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-SECPEP	A375_MHC_IP_R2	2	392.28521728515625	3	391.885353	1172.63423	-0.46373	-0.00018173	0.25178	9.8669E-05	-0.21195	-8.3058E-05	391.88536711403043	28.209	0.30344	28.887	28.757	29.06	0.67857					12	5	3	0	0	0	0.24548	1	9742	9742		40.239	33.609	1	7108800			16092	12500;5384	11651	11740	15735	15735					0.05481711122615707
FVKKLLWRVLR	11	Unmodified	_FVKKLLWRVLR_					0	0	0			REV__ENSG00000198911|ENST00000361204|SREBF2	REV__ENSG00000198911|ENST00000361204|SREBF2	MSMS	A375_MHC_IP_R1	1	729.6548461914062	2	729.477006	1456.93946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.396	1	88.396	87.896	88.896	0								0	0	0	0.16354	1	32448	32448		0.30703	0	1		+		16093	22445	11652	11741	15736	15736					0.22926726986611357
FVKLIHIPINN	11	Unmodified	_FVKLIHIPINN_					0	0	0		ENSG00000132432|ENST00000352861|SEC61G;ENST00000460484.5_1_7:54823470-54826890:-|nuORF;ENST00000461536.1_1_7:54823470-54826890:-|nuORF	ENSG00000132432|ENST00000352861|SEC61G	ENSG00000132432|ENST00000352861|SEC61G	MULTI-MSMS	A375_MHC_IP_R1	1	436.99945068359375	3	436.599324	1306.77614	-0.12981	-5.6676E-05	0.1834	8.0073E-05	0.053589	2.3397E-05	436.5994249913239	79.633	0.76926	79.633	79.265	80.034	0					26	14	3	0	0	0	0.43152	1	29073	29073		23.964	18.561	1	1397600			16094	4407	11653	11742	15737	15737					0.13502504144958039
FVKLIHIPINN	11	Unmodified	_FVKLIHIPINN_					0	0	0		ENSG00000132432|ENST00000352861|SEC61G;ENST00000460484.5_1_7:54823470-54826890:-|nuORF;ENST00000461536.1_1_7:54823470-54826890:-|nuORF	ENSG00000132432|ENST00000352861|SEC61G	ENSG00000132432|ENST00000352861|SEC61G	MULTI-MSMS	A375_MHC_IP_R2	2	436.9991149902344	3	436.599324	1306.77614	-0.22492	-9.82E-05	-0.0061084	-2.6669E-06	-0.23103	-0.00010087	436.5993349137621	78.567	0.76303	79.312	79.033	79.796	0.74474					22	14	2	0	0	0	0.51633	1	29861	29861		19.144	16.072	1	2167800			16095	4407	11653	11742	15738	15738					0.13502504144958039
FVKVSSPRKV	10	Unmodified	_FVKVSSPRKV_					0	0	0			REV__ENST00000568980.1_1_15:34781237-34781759:-|nuORF	REV__ENST00000568980.1_1_15:34781237-34781759:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	383.60992431640625	3	382.904636	1145.69208	0.70471	0.00026984	-0.4456	-0.00017062	0.2591	9.9211E-05	382.90454018786073	38.985	0.45765	38.985	38.73	39.187	0					20	8	3	0	0	0	0.71693	1	13177	13177		4.7159	0.52642	1	6665900	+		16096	17342	11654	11743	15739	15739					0.1250597304801886
FVLKAIRPQ	9	Unmodified	_FVLKAIRPQ_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	A375_MHC_IP_R2	2	358.6217956542969	3	357.89396	1070.66005	-0.3469	-0.00012415	0.79916	0.00028602	0.45226	0.00016186	357.89438840705446	66.448	0.40855	67.184	66.882	67.29	0.73631					9	7	2	0	0	0	0.77003	1	25189	25189		2.2828	0	1	541680			16097	9866	11655	11744	15740	15740					0.12754605364875715
FVLLWLLYIFF	11	Unmodified	_FVLLWLLYIFF_					0	0	0		nc|ENSG00000183023|P32418-2|SLC8A1;nc|ENSG00000183023|P32418-3|SLC8A1;nc|ENSG00000183023|P32418-4|SLC8A1;nc|ENSG00000183023|P32418-5|SLC8A1;ENSG00000183023|ENST00000332839|SLC8A1	nc|ENSG00000183023|P32418-2|SLC8A1	nc|ENSG00000183023|P32418-2|SLC8A1	MULTI-SECPEP	A375_MHC_IP_R1	1	491.6427001953125	3	491.956337	1472.84718	-0.38615	-0.00018997	1.9393	0.00095403	1.5531	0.00076407	491.95741474581365	64.817	0.81336	64.817	64.242	65.055	0					21	15	2	0	0	0	1.0014	1	23366	23366		0.094841	0	1	1370300			16098	8456	11656	11745	15741	15741					0.1296720412974537
FVLPELPSV	9	Unmodified	_FVLPELPSV_					0	0	0		nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000536027.1_1_16:71958181-71961713:+|nuORF;ENST00000541180.1_1_16:71958590-71961713:+|nuORF;nc|ENSG00000182149|P53990-6|IST1	nc|ENSG00000182149|P53990-2|IST1	nc|ENSG00000182149|P53990-2|IST1	MULTI-MSMS	A375_MHC_IP_R1	1	501.1983337402344	2	500.789318	999.564084	-0.58933	-0.00029513	0.6224	0.00031169	0.033068	1.656E-05	500.78958707204407	129.88	0.35403	129.88	129.7	130.06	0					12	6	2	0	0	0	0.091096	1	50026	50026		52.268	14.117	1	89402000			16099	8377	11657	11746	15742	15742					0.06428412734157973
FVLPELPSV	9	Unmodified	_FVLPELPSV_					0	0	0		nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000536027.1_1_16:71958181-71961713:+|nuORF;ENST00000541180.1_1_16:71958590-71961713:+|nuORF;nc|ENSG00000182149|P53990-6|IST1	nc|ENSG00000182149|P53990-2|IST1	nc|ENSG00000182149|P53990-2|IST1	MULTI-MSMS	A375_MHC_IP_R2	2	501.1889343261719	2	500.789318	999.564084	-0.62134	-0.00031116	-0.29384	-0.00014715	-0.91518	-0.00045831	500.7891401481246	129.65	0.70732	129.87	129.54	130.25	0.2142					23	13	3	0	0	0	0.0068722	2	50952	50952;51018		188.08	91.003	1	101030000			16100	8377	11657	11746	15743;15744	15743					0.06428412734157973
FVLPLPICV	9	Unmodified	_FVLPLPICV_					0	0	0		ANKEF1|p.G427W|1|0.29|ENSG00000132623|chr20:10049848-10049848|G/T|missense_variant;ENSG00000132623|ENST00000378392|ANKEF1	ANKEF1|p.G427W|1|0.29|ENSG00000132623|chr20:10049848-10049848|G/T|missense_variant	ANKEF1|p.G427W|1|0.29|ENSG00000132623|chr20:10049848-10049848|G/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	501.18939208984375	2	500.798632	999.582711	-0.59238	-0.00029666	0.41214	0.0002064	-0.18025	-9.0267E-05	500.79873013404034	130.08	0.66002	130.08	129.85	130.51	0					28	12	4	0	0	0	0.64653	1	49965	49965		20.871	2.7362	1	135370000			16101	139	11658	11747	15745	15745					0.08290251104347135
FVLTHIARF	9	Unmodified	_FVLTHIARF_					0	0	0			REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B	REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B	MULTI-MSMS	A375_MHC_IP_R1	1	552.2786865234375	2	552.321651	1102.62875	-0.2879	-0.00015902	-0.41598	-0.00022976	-0.70389	-0.00038877	552.3210716640916	108.41	0.66008	108.41	108.15	108.81	0					15	12	2	0	0	0	0.50892	1	39884	39884		20.454	9.6297	1	1145400	+		16102	22126	11659	11748	15746	15746					0.08154032330776317
FVLTHIARF	9	Unmodified	_FVLTHIARF_					0	0	0			REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B	REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B	MULTI-MSMS	A375_MHC_IP_R2	2	552.7199096679688	2	552.321651	1102.62875	-0.82352	-0.00045485	-1.8952	-0.0010468	-2.7187	-0.0015016	552.3206496506558	107.61	0.56145	108.36	108.05	108.61	0.75436					15	10	2	0	0	0	0.27064	1	40688	40688		36.044	1.9418	1	1140800	+		16103	22126	11659	11748	15747	15747					0.08154032330776317
FVLTHIARF	9	Unmodified	_FVLTHIARF_					0	0	0			REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B	REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	552.321651	1102.62875	-0.2879	-0.00015902	-0.41598	-0.00022976	-0.70389	-0.00038877	552.3210716640916	108.41	0.66008	108.41	108.15	108.81	0	0.024891	0.00089622	NaN	36.044	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1145400	+		16104	22126	11659	11748							0.08154032330776317
FVLTHIARF	9	Unmodified	_FVLTHIARF_					0	0	0			REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B	REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	552.321651	1102.62875	-0.82352	-0.00045485	-1.8952	-0.0010468	-2.7187	-0.0015016	552.3206496506558	107.61	0.56145	108.36	108.05	108.61	0.75436	-0.024891	-0.00073778	NaN	36.044	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1140800	+		16105	22126	11659	11748							0.08154032330776317
FVMIFFIWMFF	11	Unmodified	_FVMIFFIWMFF_					0	0	0			REV__ENSG00000174343|ENST00000310169|CHRNA9	REV__ENSG00000174343|ENST00000310169|CHRNA9	MSMS	A375_MHC_IP_R1	1	764.1122436523438	2	764.382006	1526.74946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.79	1	106.79	106.29	107.29	0								0	0	0	0.16331	1	39195	39195		1.4819	0	1		+		16106	21279	11660	11749	15748	15748					0.007153559377002239
FVNMPDMLLTY	11	Unmodified	_FVNMPDMLLTY_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	A375_MHC_IP_R1	1	672.7217407226562	2	672.322342	1342.63013	-0.48384	-0.0003253	-0.50563	-0.00033995	-0.98947	-0.00066525	672.321944453093	117.86	0.40562	117.86	117.61	118.02	0					14	7	2	0	0	0	0.41028	1	43345	43345		38.176	3.7738	1	7361900	+		16107	19778	11661	11750	15749	15749					-0.027478824776153488
FVNVKNKA	8	Unmodified	_FVNVKNKA_					0	0	0			REV__nc|ENSG00000198590|Q8IVJ8-3|APRG1	REV__nc|ENSG00000198590|Q8IVJ8-3|APRG1	MULTI-SECPEP	A375_MHC_IP_R1	1	459.6558837890625	2	460.271627	918.528701	-0.37897	-0.00017443	0.19672	9.0547E-05	-0.18225	-8.3883E-05	460.27180761539387	46.969	0.41159	46.969	46.799	47.211	0					10	7	2	0	0	0	0.972	1	16554	16554		8.5933	0	1	1559400	+		16108	27448	11662	11751	15750	15750					0.06617794996986959
FVPDTPVGV	9	Unmodified	_FVPDTPVGV_					0	0	0		nc|ENSG00000144711|Q6DN90-2|IQSEC1;nc|ENSG00000144711|Q6DN90|IQSEC1;ENSG00000144711|ENST00000613206|IQSEC1	nc|ENSG00000144711|Q6DN90-2|IQSEC1	nc|ENSG00000144711|Q6DN90-2|IQSEC1	MULTI-MSMS	A375_MHC_IP_R1	1	930.5073852539062	1	930.49311	929.485833	0.078386	7.2938E-05	-0.32392	-0.0003014	-0.24553	-0.00022847	930.4929763369709	82.647	0.45566	82.647	82.418	82.874	0					13	8	2	0	0	0	0.58047	1	30142	30142		15.847	2.3393	1	1230300			16109	5506	11663	11752	15751	15751					0.018269801489168458
FVPDYTREL	9	Unmodified	_FVPDYTREL_					0	0	0		ENSG00000129925|ENST00000431232|PGAP6	ENSG00000129925|ENST00000431232|PGAP6	ENSG00000129925|ENST00000431232|PGAP6	MULTI-SECPEP	A375_MHC_IP_R1	1	570.6898193359375	2	570.290214	1138.56587	-0.22998	-0.00013116	0.45457	0.00025924	0.22459	0.00012808	570.2902863226469	68.806	0.86282	68.806	68.412	69.275	0					24	16	2	0	0	0	0.69507	1	24912	24912		13.906	0	1	2251300			16110	4213	11664	11753	15752	15752					0.0021342175209611014
FVPDYTREL	9	Unmodified	_FVPDYTREL_					0	0	0		ENSG00000129925|ENST00000431232|PGAP6	ENSG00000129925|ENST00000431232|PGAP6	ENSG00000129925|ENST00000431232|PGAP6	MULTI-SECPEP	A375_MHC_IP_R2	2	570.1528930664062	2	570.290214	1138.56587	-0.20857	-0.00011895	-0.59658	-0.00034022	-0.80515	-0.00045917	570.2896620165216	68.11	0.71136	68.845	68.51	69.221	0.73512					21	13	2	0	0	0	0.73008	1	25890	25890		12.241	4.9514	1	2228600			16111	4213	11664	11753	15753	15753					0.0021342175209611014
FVPEIFHRI	9	Unmodified	_FVPEIFHRI_					0	0	0		TOP3A|p.N830Tfs*52|1|0.27|ENSG00000177302|chr17:18278015-18278015|G/-|frameshift_variant;nc|ENSG00000177302|Q13472-3|TOP3A;nc|ENSG00000177302|Q13472-2|TOP3A;ENSG00000177302|ENST00000321105|TOP3A;ENST00000469739.6_1_17:18188617-18210429:-|nuORF	TOP3A|p.N830Tfs*52|1|0.27|ENSG00000177302|chr17:18278015-18278015|G/-|frameshift_variant	TOP3A|p.N830Tfs*52|1|0.27|ENSG00000177302|chr17:18278015-18278015|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	386.9537353515625	3	386.553715	1156.63931	0.37103	0.00014342	-0.085947	-3.3223E-05	0.28508	0.0001102	386.55366570059107	78.269	0.71025	78.269	77.946	78.657	0					19	13	2	0	0	0	0.68046	1	28615	28615		5.7834	3.2849	1	1735600			16112	8074	11665	11754	15754	15754					0.06726014985247275
FVPEIFHRI	9	Unmodified	_FVPEIFHRI_					0	0	0		TOP3A|p.N830Tfs*52|1|0.27|ENSG00000177302|chr17:18278015-18278015|G/-|frameshift_variant;nc|ENSG00000177302|Q13472-3|TOP3A;nc|ENSG00000177302|Q13472-2|TOP3A;ENSG00000177302|ENST00000321105|TOP3A;ENST00000469739.6_1_17:18188617-18210429:-|nuORF	TOP3A|p.N830Tfs*52|1|0.27|ENSG00000177302|chr17:18278015-18278015|G/-|frameshift_variant	TOP3A|p.N830Tfs*52|1|0.27|ENSG00000177302|chr17:18278015-18278015|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	386.9534912109375	3	386.553715	1156.63931	-0.14037	-5.4262E-05	-0.21362	-8.2574E-05	-0.35399	-0.00013684	386.55370107820954	77.345	0.5584	78.088	77.657	78.216	0.74293					19	10	3	0	0	0	0.74412	1	29366	29366		10.151	0	1	1788200			16113	8074	11665	11754	15755	15755					0.06726014985247275
FVPFSFSLL	9	Unmodified	_FVPFSFSLL_					0	0	0		ENSG00000185344|ENST00000330342|ATP6V0A2;ENST00000543687.1_1_12:124241315-124242576:+|nuORF	ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	MSMS	A375_MHC_IP_R1	1	528.7297973632812	2	528.791861	1055.56917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.08	1	136.08	135.58	136.58	0								0	0	0	0.15069	1	52430	52430		20.454	1.1966	1				16114	8659	11666	11755	15756	15756					0.04360716596761449
FVPRWLFH	8	Unmodified	_FVPRWLFH_					0	0	0			REV__ENST00000562985.5_1_16:71901919-71918510:-|nuORF	REV__ENST00000562985.5_1_16:71901919-71918510:-|nuORF	MSMS	A375_MHC_IP_R1	1	367.79388427734375	3	367.871267	1100.59197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.558	1	18.558	18.058	19.058	0								0	0	0	0.16876	1	4430	4430		0	0	1		+		16115	26199	11667	11756	15757	15757					0.04569780504903065
FVQLPREVIV	10	Unmodified	_FVQLPREVIV_					0	0	0			REV__nc|ENSG00000204963|Q9UN72-2|PCDHA7	REV__nc|ENSG00000204963|Q9UN72-2|PCDHA7	MULTI-MSMS	A375_MHC_IP_R1	1	600.4232177734375	2	600.360973	1198.70739	-0.7351	-0.00044133	2.1977	0.0013194	1.4626	0.00087809	600.3619323417174	142.97	1.2088	142.97	142.29	143.49	0					39	23	2	0	0	0	0.71946	1	54915	54915		1.4819	0	1	3808100	+		16116	22552	11668	11757	15758	15758					0.1159883984521457
FVQLPREVIV	10	Unmodified	_FVQLPREVIV_					0	0	0			REV__nc|ENSG00000204963|Q9UN72-2|PCDHA7	REV__nc|ENSG00000204963|Q9UN72-2|PCDHA7	MULTI-SECPEP	A375_MHC_IP_R1	1	600.2607421875	2	600.360973	1198.70739	-0.7351	-0.00044133	2.1977	0.0013194	1.4626	0.00087809	600.3619323417174	142.97	1.2088	142.97	142.29	143.49	0					39	23	2	0	0	0	0.94587	1	54797	54797		0.40072	0	1	3808100	+		16117	22552	11668	11757	15759	15759					0.1159883984521457
FVQRGTGLF	9	Unmodified	_FVQRGTGLF_					0	0	0			REV__ENSG00000145934|ENST00000518659|TENM2	REV__ENSG00000145934|ENST00000518659|TENM2	MULTI-SECPEP	A375_MHC_IP_R2	2	512.179931640625	2	512.782359	1023.55016	-0.78985	-0.00040502	1.8731	0.00096049	1.0832	0.00055547	512.7832824530187	129.64	0.30289	129.86	129.75	130.05	0.22305					7	5	2	0	0	0	0.69507	1	50955	50955		19.257	2.3147	1	2233200	+		16118	19505	11669	11758	15760	15760					0.0393318002571732
FVQVSDKYQ	9	Unmodified	_FVQVSDKYQ_					0	0	0			REV__ENSG00000157353|ENST00000288078|FCSK	REV__ENSG00000157353|ENST00000288078|FCSK	MULTI-MSMS	A375_MHC_IP_R2	2	558.1891479492188	2	557.282389	1112.55022	-0.71162	-0.00039657	-2.0124	-0.0011215	-2.7241	-0.0015181	557.2823736766712	63.084	1.1666	63.826	63.484	64.651	0.74263					59	22	4	0	0	0	0.51106	2	24066	24047;24066		19.257	4.0085	1	12828000	+		16119	20024	11670	11759	15761;15762	15762					-0.001548647649542545
FVRDMIREV	9	Unmodified	_FVRDMIREV_					0	0	0		ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-MSMS	A375_MHC_IP_R1	1	389.2782287597656	3	388.877981	1163.61211	0.023756	9.2383E-06	0.46262	0.0001799	0.48638	0.00018914	388.8781696688075	53.022	0.75993	53.022	52.694	53.453	0					31	14	3	0	0	0	0.20295	1	18890	18890		30.354	18.86	1	5718400			16120	4232	11671	11760	15763	15763					0.03685163382533574
FVRDMIREV	9	Unmodified	_FVRDMIREV_					0	0	0		ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-MSMS	A375_MHC_IP_R2	2	389.2777404785156	3	388.877981	1163.61211	-0.52824	-0.00020542	0.20728	8.0605E-05	-0.32097	-0.00012482	388.8780577920483	52.174	0.60852	52.926	52.626	53.234	0.75225					27	11	3	0	0	0	0.095445	1	19648	19648		42.068	16.047	1	5018500			16121	4232	11671	11760	15764	15764					0.03685163382533574
FVRRGLTVR	9	Unmodified	_FVRRGLTVR_					0	0	0			REV__ENST00000377044.8_2_9:74383426-74383705:-|nuORF	REV__ENST00000377044.8_2_9:74383426-74383705:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	368.62799072265625	3	368.564725	1102.67235	0.46498	0.00017138	-2.4596	-0.00090651	-1.9946	-0.00073514	368.89773552637433	45.672	0.60893	45.672	45.434	46.043	0					14	11	2	0	0	0	0.69884	1	16042	16042		7.1017	4.2584	1	3248200	+		16122	24154	11672	11761	15765	15765					0.1251164182795037
FVRRNLSFR	9	Unmodified	_FVRRNLSFR_					0	0	0		nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;ENSG00000072518|ENST00000402010|MARK2	nc|ENSG00000072518|Q7KZI7-10|MARK2	nc|ENSG00000072518|Q7KZI7-10|MARK2	MULTI-MSMS	A375_MHC_IP_R2	2	398.9214782714844	3	398.899996	1193.67816	-0.028276	-1.1279E-05	-0.056059	-2.2362E-05	-0.084335	-3.3641E-05	398.89996968004795	27.573	1.115	28.252	27.945	29.06	0.67857					60	21	5	0	0	0	0.69317	1	9492	9492		7.609	0	1	158050000			16123	1539	11673	11762	15766	15766					0.08906740339602948
FVSHMSLHVDK	11	Unmodified	_FVSHMSLHVDK_					0	0	0		ENSG00000151612|ENST00000508784|ZNF827;nc|ENSG00000151612|Q17R98-2|ZNF827;nc|ENSG00000151612|Q17R98-3|ZNF827	ENSG00000151612|ENST00000508784|ZNF827	ENSG00000151612|ENST00000508784|ZNF827	MULTI-SECPEP	A375_MHC_IP_R2	2	433.2850036621094	3	433.888657	1298.64414	-0.093062	-4.0378E-05	0.26299	0.00011411	0.16993	7.3729E-05	434.2230783739041	136.48	0.92314	136.6	136.2	137.12	0.11134					22	17	2	0	0	0	1.0014	1	53589	53589		0	0	1	1109700			16124	5915	11674	11763	15767	15767					0.006765310656646761
FVSYPFVRY	9	Unmodified	_FVSYPFVRY_					0	0	0			REV__nc|ENSG00000141458|O15118-2|NPC1	REV__nc|ENSG00000141458|O15118-2|NPC1	MULTI-MSMS	A375_MHC_IP_R1	1	589.1541748046875	2	589.305667	1176.59678	-0.041001	-2.4162E-05	1.557	0.00091754	1.516	0.00089338	589.3063570085976	21.58	0.30423	21.58	21.352	21.656	0					7	5	2	0	0	0	0.64808	1	5691	5691		11.64	4.9171	1	1452300	+		16125	19270	11675	11764	15768	15768					0.015546198570064007
FVSYPFVRY	9	Unmodified	_FVSYPFVRY_					0	0	0			REV__nc|ENSG00000141458|O15118-2|NPC1	REV__nc|ENSG00000141458|O15118-2|NPC1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	589.305667	1176.59678	-0.041001	-2.4162E-05	1.557	0.00091754	1.516	0.00089338	589.3063570085976	21.58	0.30423	21.58	21.352	21.656	0	0	0	NaN	11.64	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1452300	+		16126	19270	11675	11764							0.015546198570064007
FVTRTKKK	8	Unmodified	_FVTRTKKK_					0	0	0			REV__ENSG00000188620|ENST00000357878|HMX3	REV__ENSG00000188620|ENST00000357878|HMX3	MULTI-MSMS	A375_MHC_IP_R1	1	504.36834716796875	2	504.321651	1006.62875	-0.72805	-0.00036717	0.62105	0.00031321	-0.107	-5.3964E-05	504.32210302627607	149.81	2.0732	149.81	147.93	150	0					158	65	3	0	0	0	0.77797	1	56929	56929		2.3027	1.6124	1	562450	+		16127	22101	11676	11765	15769	15769					0.12570032330791037
FVVLNQFKI	9	Unmodified	_FVVLNQFKI_					0	0	0			REV__DNTT|p.D34N|1|0.19|ENSG00000107447|chr10:96304597-96304597|G/A|missense_variant	REV__DNTT|p.D34N|1|0.19|ENSG00000107447|chr10:96304597-96304597|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	554.229736328125	2	554.331685	1106.64882	-0.58089	-0.000322	-0.15302	-8.4824E-05	-0.73391	-0.00040683	554.3315294933383	128.9	0.71538	128.9	128.58	129.3	0					18	13	2	0	0	0	0.73415	1	49506	49506		3.9444	0	1	10155000	+		16128	16025	11677	11766	15770	15770					0.09975783270760985
FVVTFPRAY	9	Unmodified	_FVVTFPRAY_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-SECPEP	A375_MHC_IP_R1	1	550.6382446289062	2	550.300384	1098.58622	-0.37436	-0.00020601	0.71355	0.00039267	0.3392	0.00018666	550.3004629303331	92.287	0.35319	92.287	92.11	92.463	0					12	6	3	0	0	0	0.53748	1	33906	33906		30.637	10.183	1	1138200			16129	1565	11678	11767	15771	15771					0.040866372025675446
FVWHKDGKFF	10	Unmodified	_FVWHKDGKFF_					0	0	0			REV__ENSG00000157227|ENST00000311852|MMP14	REV__ENSG00000157227|ENST00000311852|MMP14	MSMS	A375_MHC_IP_R1	1	655.851318359375	2	655.837665	1309.66078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.532	1	96.532	96.032	97.032	0								0	0	0	0.15417	1	35475	35475		7.2892	0.56607	1		+		16130	20021	11679	11768	15772	15772					0.01833400013924802
FVWSGTAEA	9	Unmodified	_FVWSGTAEA_					0	0	0		ENSG00000124422|ENST00000261497|USP22	ENSG00000124422|ENST00000261497|USP22	ENSG00000124422|ENST00000261497|USP22	MULTI-MSMS	A375_MHC_IP_R1	1	484.6293640136719	2	484.229625	966.444697	-0.12974	-6.2824E-05	0.36987	0.0001791	0.24013	0.00011628	484.22966971418344	78.53	0.3547	78.53	78.352	78.707	0					11	6	2	0	0	0	0.43185	1	28648	28648		23.148	6.2061	1	2593800			16131	3899	11680	11769	15773	15773					-0.039867808905796664
FVWSGTAEA	9	Unmodified	_FVWSGTAEA_					0	0	0		ENSG00000124422|ENST00000261497|USP22	ENSG00000124422|ENST00000261497|USP22	ENSG00000124422|ENST00000261497|USP22	MULTI-MSMS	A375_MHC_IP_R2	2	484.6295471191406	2	484.229625	966.444697	-0.59951	-0.0002903	0.68457	0.00033149	0.08506	4.1189E-05	484.2298763092323	77.735	0.46081	78.478	78.265	78.726	0.74293					15	8	3	0	0	0	0.32899	1	29531	29531		28.487	15.955	1	1900700			16132	3899	11680	11769	15774	15774					-0.039867808905796664
FVYDEPGHAV	10	Unmodified	_FVYDEPGHAV_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF;MYOF|p.A1785Pfs*8|1|0.41|ENSG00000138119|chr10:93323281-93323281|C/-|frameshift_variant;nc|ENSG00000138119|Q9NZM1-8|MYOF;nc|ENSG00000138119|Q9NZM1-7|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	A375_MHC_IP_R1	1	567.6663208007812	2	567.266739	1132.51892	-0.040566	-2.3011E-05	-0.0088219	-5.0044E-06	-0.049387	-2.8016E-05	567.2667416902334	48.23	0.40567	48.23	48.02	48.426	0					11	7	2	0	0	0	0.20882	1	17019	17019		48.346	23.672	1	1802600			16133	4961	11681	11770	15775	15775					-0.042034377990376015
FVYDEVRKL	9	Unmodified	_FVYDEVRKL_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-SECPEP	A375_MHC_IP_R1	1	390.61688232421875	3	390.21688	1167.62881	0.21268	8.2993E-05	0.11805	4.6066E-05	0.33074	0.00012906	390.21692748323005	55.661	0.45998	55.661	55.381	55.841	0					22	8	3	0	0	0	0.30133	1	19922	19922		43.982	14.141	1	9737000			16134	6659	11682	11771	15776	15776					0.05169987540148213
FVYDEVRKL	9	Unmodified	_FVYDEVRKL_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	A375_MHC_IP_R2	2	390.6169738769531	3	390.21688	1167.62881	-0.32636	-0.00012735	0.4848	0.00018918	0.15844	6.1826E-05	390.21705279015043	54.85	0.6636	55.601	55.37	56.034	0.75075					23	12	3	0	0	0	0.095851	1	20699	20699		51.415	11.176	1	9503400			16135	6659	11682	11771	15777	15777					0.05169987540148213
FVYGDPNTV	9	Unmodified	_FVYGDPNTV_					0	0	0			REV__ENSG00000158516|ENST00000222481|CPA2	REV__ENSG00000158516|ENST00000222481|CPA2	MSMS	A375_MHC_IP_R1	1	506.1795654296875	2	506.242732	1010.47091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.382	1	73.382	72.882	73.882	0								0	0	0	0.1521	1	26717	26717		18.135	1.1927	1		+		16136	20080	11683	11772	15778	15778					-0.033905117191011414
FVYGDPNTV	9	Unmodified	_FVYGDPNTV_					0	0	0			REV__ENSG00000158516|ENST00000222481|CPA2	REV__ENSG00000158516|ENST00000222481|CPA2	MSMS	A375_MHC_IP_R2	2	506.17913818359375	2	506.242732	1010.47091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.577	1	73.313	72.813	73.813	0.73541								0	0	0	0.1521	1	27544	27544		18.135	2.2878	1		+		16137	20080	11683	11772	15779	15779					-0.033905117191011414
FVYGEPREL	9	Unmodified	_FVYGEPREL_					0	0	0		ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	MULTI-MSMS	A375_MHC_IP_R1	1	555.4754638671875	2	555.284931	1108.55531	-0.59563	-0.00033074	0.36278	0.00020145	-0.23285	-0.0001293	555.2851065119942	58.109	1.2193	58.109	57.771	58.99	0					59	23	4	0	0	0	0.068433	1	20861	20861		70.332	24.311	1	41081000			16138	1191	11684	11773	15780	15780					0.0053743909768400044
FVYGEPREL	9	Unmodified	_FVYGEPREL_					0	0	0		ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	MULTI-MSMS	A375_MHC_IP_R2	2	555.6842041015625	2	555.284931	1108.55531	-1.1253	-0.00062486	0.23879	0.0001326	-0.88649	-0.00049226	555.2850548555815	57.346	1.3728	58.095	57.814	59.187	0.74894					53	26	3	0	0	0	0.037085	1	21640	21640		75.761	35.804	1	49037000			16139	1191	11684	11773	15781	15781					0.0053743909768400044
FVYTETVH	8	Unmodified	_FVYTETVH_					0	0	0		nc|ENSG00000117153|Q53G59-2|KLHL12;ENSG00000117153|ENST00000367261|KLHL12	nc|ENSG00000117153|Q53G59-2|KLHL12	nc|ENSG00000117153|Q53G59-2|KLHL12	MSMS	A375_MHC_IP_R2	2	498.1634826660156	2	498.245275	994.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.306	1	65.046	64.546	65.546	0.74022								0	0	0	0.16876	1	24382	24382		20.871	7.3633	1				16140	3461	11685	11774	15782	15782					-0.021462078564809417
FWAFGLGAPSL	11	Unmodified	_FWAFGLGAPSL_					0	0	0		ENST00000415560.1_1_X:26766465-26767074:+|nuORF	ENST00000415560.1_1_X:26766465-26767074:+|nuORF	ENST00000415560.1_1_X:26766465-26767074:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	388.93634033203125	3	389.206203	1164.59678	-0.5243	-0.00020406	-0.91516	-0.00035619	-1.4395	-0.00056025	389.5398198316572	38.531	0.86502	39.306	38.895	39.76	0.77451					31	16	4	0	0	0	0.90584	1	14330	14330		9.7643	0	1	2633100			16141	11679	11686	11775	15783	15783					0.02106619856999714
FWDCCSTSY	9	Unmodified	_FWDCCSTSY_					0	0	0		ENSG00000152193|ENST00000282003|OBI1	ENSG00000152193|ENST00000282003|OBI1	ENSG00000152193|ENST00000282003|OBI1	MULTI-MSMS	A375_MHC_IP_R1	1	557.097412109375	2	556.19661	1110.37867	-0.62073	-0.00034525	0.34297	0.00019076	-0.27775	-0.00015448	556.1974030946867	53.313	0.60862	53.313	52.997	53.605	0					27	11	3	0	0	0	0.55818	1	18981	18981		16.942	2.3606	1	5802100			16142	5949	11687	11776	15784	15784					-0.17210681119286164
FWFKDFEYVLY	11	Unmodified	_FWFKDFEYVLY_					0	0	0			REV__ENSG00000179387|ENST00000323570|ELMOD2	REV__ENSG00000179387|ENST00000323570|ELMOD2	MSMS	A375_MHC_IP_R2	2	519.6699829101562	3	519.586861	1555.73875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.268	1	76.006	75.506	76.506	0.73795								0	0	0	0.1635	1	28569	28569		0.50596	0	1		+		16143	21557	11688	11777	15785	15785					-0.01688631911315497
FWFLLWIWLVS	11	Unmodified	_FWFLLWIWLVS_					0	0	0		ENST00000481996.1_1_6:74344990-74351530:-|nuORF;nc|ENSG00000119899|Q9NRA2-2|SLC17A5;ENSG00000119899|ENST00000355773|SLC17A5	ENST00000481996.1_1_6:74344990-74351530:-|nuORF	ENST00000481996.1_1_6:74344990-74351530:-|nuORF	MSMS	A375_MHC_IP_R1	1	504.0089111328125	3	503.947953	1508.82203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.613	1	81.613	81.113	82.113	0								0	0	0	0.16351	1	29826	29826		0.45452	0	1				16144	3630	11689	11778	15786	15786					0.08797149327165243
FWHRRQILMLR	11	Unmodified	_FWHRRQILMLR_					0	0	0		nc|ENSG00000156873|P15735-2|PHKG2;ENSG00000156873|ENST00000563588|PHKG2	nc|ENSG00000156873|P15735-2|PHKG2	nc|ENSG00000156873|P15735-2|PHKG2	MULTI-MSMS	A375_MHC_IP_R2	2	779.3453979492188	2	778.443172	1554.87179	-0.77174	-0.00060076	1.158	0.00090147	0.3863	0.00030072	778.4440046087327	143.18	0.4025	143.21	142.94	143.34	0.030731					13	7	2	0	0	0	0.73902	1	55958	55958		0.30703	0	1	1005900			16145	6214	11690	11779	15787	15787					0.11654953784181998
FWIRKEKIKIY	11	Unmodified	_FWIRKEKIKIY_					0	0	0			REV__tr|U7SXY6|U7SXY6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00926PE=4SV=1	REV__tr|U7SXY6|U7SXY6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00926PE=4SV=1	MSMS	A375_MHC_IP_R1	1	762.5430297851562	2	762.458479	1522.90241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.26	1	125.26	124.76	125.76	0								0	0	0	0.16339	1	47567	47567		1.0715	0	1		+		16146	28623	11691	11780	15788	15788					0.16187010650219236
FWKNKGTKY	9	Unmodified	_FWKNKGTKY_					0	0	0			REV__ENSG00000131469|ENST00000253788|RPL27	REV__ENSG00000131469|ENST00000253788|RPL27	MULTI-MSMS	A375_MHC_IP_R1	1	586.7150268554688	2	586.316566	1170.61858	-0.52027	-0.00030504	-2.3338	-0.0013683	-2.854	-0.0016734	586.3151166874467	23.915	0.35456	23.915	23.737	24.092	0					10	6	2	0	0	0	0.55471	1	6713	6713		17.113	0.96379	1	3804800	+		16147	18606	11692	11781	15789	15789					0.04009424605555978
FWKNKGTKY	9	Unmodified	_FWKNKGTKY_					0	0	0			REV__ENSG00000131469|ENST00000253788|RPL27	REV__ENSG00000131469|ENST00000253788|RPL27	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	586.316566	1170.61858	-0.52027	-0.00030504	-2.3338	-0.0013683	-2.854	-0.0016734	586.3151166874467	23.915	0.35456	23.915	23.737	24.092	0	0.091454	-0.00013947	NaN	17.113	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3804800	+		16148	18606	11692	11781							0.04009424605555978
FWKNKGTKY	9	Unmodified	_FWKNKGTKY_					0	0	0			REV__ENSG00000131469|ENST00000253788|RPL27	REV__ENSG00000131469|ENST00000253788|RPL27	MULTI-MATCH	A375_MHC_IP_R2	2		2	586.316566	1170.61858	-0.86889	-0.00050945	-2.0722	-0.0012149	-2.941	-0.0017244	586.315553935122	23.102	0.35631	23.732	23.572	23.928	0.63014	-0.091454	0.00016729	NaN	17.113	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1755100	+		16149	18606	11692	11781							0.04009424605555978
FWLLILLNWAR	11	Unmodified	_FWLLILLNWAR_					0	0	0			REV__ENST00000254928.9_1_17:27184972-27185463:+|nuORF	REV__ENST00000254928.9_1_17:27184972-27185463:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	483.0203552246094	3	482.286969	1443.83908	-0.70371	-0.00033939	0.3877	0.00018698	-0.31601	-0.00015241	482.28762960243876	143.14	0.90891	143.14	142.49	143.39	0					59	17	5	0	0	0	0.73897	3	54841	54841;54905;54928		0.094841	0.011491	1	15917000	+		16150	23143	11693	11782	15790;15791;15792	15790					0.13491069932979372
FWLLILLNWAR	11	Unmodified	_FWLLILLNWAR_					0	0	0			REV__ENST00000254928.9_1_17:27184972-27185463:+|nuORF	REV__ENST00000254928.9_1_17:27184972-27185463:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	483.0203552246094	3	482.286969	1443.83908	-0.70371	-0.00033939	0.3877	0.00018698	-0.31601	-0.00015241	482.28762960243876	143.14	0.90891	143.14	142.49	143.39	0					59	17	5	0	0	0	1.0015	1	54841	54841		0.094841	0	1	15917000	+		16151	23143	11693	11782	15793	15793					0.13491069932979372
FWLRHRLQWWR	11	Unmodified	_FWLRHRLQWWR_					0	0	0		ENSG00000256525|ENST00000539111|POLG2;ENST00000585141.5_1_17:62481823-62493086:-|nuORF;ENST00000580893.5_1_17:62486773-62489133:-|nuORF	ENSG00000256525|ENST00000539111|POLG2	ENSG00000256525|ENST00000539111|POLG2	MSMS	A375_MHC_IP_R1	1	842.8567504882812	2	842.46021	1682.90587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.069	1	86.069	85.569	86.569	0								0	0	0	0.16354	1	31552	31552		0.30703	0.30703	1				16152	9898	11694	11783	15794	15794					0.09173118267426617
FWLSFQKW	8	Unmodified	_FWLSFQKW_					0	0	0		ENST00000415861.2_1_6:109689555-109689642:-|nuORF	ENST00000415861.2_1_6:109689555-109689642:-|nuORF	ENST00000415861.2_1_6:109689555-109689642:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	381.6400146484375	3	381.19916	1140.57565	0.17199	6.5562E-05	1.6105	0.00061391	1.7825	0.00067947	381.19961319463846	19.385	0.20283	19.385	19.268	19.471	0					5	3	2	0	0	0	0.972	1	4763	4763		10.074	4.2905	1	4153900			16153	11682	11695	11784	15795	15795					0.010986545481500798
FWLWSNLL	8	Unmodified	_FWLWSNLL_					0	0	0			REV__ENST00000490857.5_1_2:228211900-228221830:+|nuORF	REV__ENST00000490857.5_1_2:228211900-228221830:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	359.4283142089844	3	360.195527	1077.56475	0.31604	0.00011384	0.77555	0.00027935	1.0916	0.00039319	360.1953183313199	21.022	0.25378	21.022	20.844	21.098	0					6	4	2	0	0	0	0.972	1	5464	5464		1.3295	0.25807	1	275620	+		16154	20897	11696	11785	15796	15796					0.029072521738498835
FWQVWQRFDA	10	Unmodified	_FWQVWQRFDA_					0	0	0		ENSG00000079689|ENST00000377961|SCGN	ENSG00000079689|ENST00000377961|SCGN	ENSG00000079689|ENST00000377961|SCGN	MSMS	A375_MHC_IP_R1	1	461.6362609863281	3	461.559528	1381.65676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.692	1	74.692	74.192	75.192	0								0	0	0	0.15265	1	27207	27207		7.4771	0.85361	1				16155	1700	11697	11786	15797	15797					-0.018806894797762652
FWRIVQYSKKE	11	Unmodified	_FWRIVQYSKKE_					0	0	0			REV__UGT3A1|p.E71K|3|0.31|ENSG00000145626|chr5:35968119-35968119|C/T|missense_variant	REV__UGT3A1|p.E71K|3|0.31|ENSG00000145626|chr5:35968119-35968119|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	742.3865356445312	2	742.406444	1482.79833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.26	1	127.26	126.76	127.76	0								0	0	0	0.16307	1	48716	48716		2.7352	0	1		+		16156	28949	11698	11787	15798	15798					0.07624683822655243
FWRNILLLPLH	11	Unmodified	_FWRNILLLPLH_					0	0	0		nc|ENSG00000204397|Q5EG05|CARD16	nc|ENSG00000204397|Q5EG05|CARD16	nc|ENSG00000204397|Q5EG05|CARD16	MSMS	A375_MHC_IP_R2	2	711.755615234375	2	711.424439	1420.83433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.13	1	115.82	115.32	116.32	0.68999								0	0	0	0.1629	1	43397	43397		3.5965	0.31518	1				16157	14861	11699	11788	15799	15799					0.14074185790241245
FWRRRRLSREL	11	Unmodified	_FWRRRRLSREL_					0	0	0			REV__ENST00000533297.1_1_11:111896132-111933256:+|nuORF	REV__ENST00000533297.1_1_11:111896132-111933256:+|nuORF	MSMS	A375_MHC_IP_R1	1	525.70947265625	3	525.642809	1573.9066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.51	1	139.51	139.01	140.01	0								0	0	0	0.16358	1	53618	53618		0.08335	0	1		+		16158	25879	11700	11789	15800	15800					0.14259912916486428
FWRRRRLSREL	11	Unmodified	_FWRRRRLSREL_					0	0	0			REV__ENST00000533297.1_1_11:111896132-111933256:+|nuORF	REV__ENST00000533297.1_1_11:111896132-111933256:+|nuORF	MSMS	A375_MHC_IP_R2	2	525.71484375	3	525.642809	1573.9066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.979	1	85.715	85.215	86.215	0.73601								0	0	0	0.16309	1	32306	32306		2.6312	1.4164	1		+		16159	25879	11700	11789	15801	15801					0.14259912916486428
FWRRWQPRIWA	11	Unmodified	_FWRRWQPRIWA_					0	0	0		ENSG00000129159|ENST00000265969|KCNC1;nc|ENSG00000129159|P48547|KCNC1	ENSG00000129159|ENST00000265969|KCNC1	ENSG00000129159|ENST00000265969|KCNC1	MULTI-SECPEP	A375_MHC_IP_R1	1	401.62042236328125	4	401.220469	1600.85277	-0.34246	-0.0001374	0.59791	0.00023989	0.25545	0.00010249	401.22067040205167	19.927	0.55764	19.927	19.623	20.18	0					26	10	4	0	0	0	1.0014	1	5035	5035		0.45452	0.45452	1	6027500			16160	4178	11701	11790	15802	15802					0.07637740484778988
FWRRWQPRIWA	11	Unmodified	_FWRRWQPRIWA_					0	0	0		ENSG00000129159|ENST00000265969|KCNC1;nc|ENSG00000129159|P48547|KCNC1	ENSG00000129159|ENST00000265969|KCNC1	ENSG00000129159|ENST00000265969|KCNC1	MULTI-SECPEP	A375_MHC_IP_R1	1	535.2114868164062	3	534.624866	1600.85277	-0.70453	-0.00037666	0.52686	0.00028167	-0.17767	-9.4988E-05	534.6251582573697	19.946	0.50621	19.946	19.674	20.18	0					20	9	4	0	0	0	1.0015	1	5085	5085		0	0	1	2651100			16161	4178	11701	11790	15803	15803					0.07637740484778988
FWSFYCFWCMQ	11	Unmodified	_FWSFYCFWCMQ_					0	0	0		ENST00000269033.7_1_17:27957514-27957778:-|nuORF	ENST00000269033.7_1_17:27957514-27957778:-|nuORF	ENST00000269033.7_1_17:27957514-27957778:-|nuORF	MSMS	A375_MHC_IP_R1	1	516.4359130859375	3	516.53635	1546.58722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.657	1	21.657	21.157	22.157	0								0	0	0	0.1636	1	5725	5725		0	0	1				16162	10364	11702	11791	15804	15804					-0.1642097580670452
FWVLSERRQRR	11	Unmodified	_FWVLSERRQRR_					0	0	0		ENST00000539294.5_1_8:64081202-64081433:+|nuORF	ENST00000539294.5_1_8:64081202-64081433:+|nuORF	ENST00000539294.5_1_8:64081202-64081433:+|nuORF	MSMS	A375_MHC_IP_R2	2	766.9799194335938	2	766.931483	1531.84841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.37	1	112.1	111.6	112.6	0.73692								0	0	0	0.16331	1	41992	41992		1.4819	0.15237	1				16163	13260	11703	11792	15805	15805					0.10376231271197867
FWWWIVHNWIT	11	Unmodified	_FWWWIVHNWIT_					0	0	0		ENST00000503862.5_3_4:108746377-108829880:+|nuORF	ENST00000503862.5_3_4:108746377-108829880:+|nuORF	ENST00000503862.5_3_4:108746377-108829880:+|nuORF	MSMS	A375_MHC_IP_R2	2	794.4425048828125	2	794.398422	1586.78229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.46	1	117.12	116.62	117.62	0.65962								0	0	0	0.16124	1	43985	43985		12.241	7.3436	1				16164	12812	11704	11793	15806	15806					0.012370223764492039
FWYKKWKQSFY	11	Unmodified	_FWYKKWKQSFY_					0	0	0			REV__nc|ENSG00000149970|Q8WXI2-4|CNKSR2	REV__nc|ENSG00000149970|Q8WXI2-4|CNKSR2	MSMS	A375_MHC_IP_R1	1	537.6240844726562	3	537.61	1609.80817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.794	1	65.794	65.294	66.294	0								0	0	0	0.16334	1	23824	23824		1.3296	0.82369	1		+		16165	19704	11705	11794	15807	15807					0.027658718280690664
FYDDKVSAL	9	Unmodified	_FYDDKVSAL_					0	0	0		nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-4|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	MULTI-MSMS	A375_MHC_IP_R1	1	529.6635131835938	2	529.263665	1056.51278	-0.53525	-0.00028329	-0.16318	-8.6363E-05	-0.69843	-0.00036965	529.2635075711067	93.804	0.7071	93.804	93.484	94.191	0					28	13	3	0	0	0	0.11296	1	34454	34454		48.346	10.372	1	2864500			16166	4765	11706	11795	15808	15808					-0.013219560305742561
FYDDKVSAL	9	Unmodified	_FYDDKVSAL_					0	0	0		nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-4|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	MULTI-MSMS	A375_MHC_IP_R2	2	529.6631469726562	2	529.263665	1056.51278	-0.47398	-0.00025086	0.11482	6.0769E-05	-0.35916	-0.00019009	529.2635675017904	93.139	0.81065	93.878	93.546	94.356	0.73902					30	15	3	0	0	0	0.27715	1	35378	35378		32.305	5.4218	1	3292800			16167	4765	11706	11795	15809	15809					-0.013219560305742561
FYDEEHND	8	Unmodified	_FYDEEHND_					0	0	0			REV__ENSG00000139112|ENST00000266458|GABARAPL1	REV__ENSG00000139112|ENST00000266458|GABARAPL1	MULTI-SECPEP	A375_MHC_IP_R2	2	535.0982666015625	2	534.698886	1067.38322	-1.1946	-0.00063878	-0.49509	-0.00026472	-1.6897	-0.0009035	534.6985995243651	59.124	0.75976	59.871	59.438	60.198	0.74714					35	14	3	0	0	0	0.972	1	22334	22334		5.7604	2.4791	1	11892000	+		16168	19132	11707	11796	15810	15810					-0.14777757380511503
FYDKLCAKCY	10	Unmodified	_FYDKLCAKCY_					0	0	0			REV__ENSG00000013561|ENST00000394520|RNF14	REV__ENSG00000013561|ENST00000394520|RNF14	MULTI-SECPEP	A375_MHC_IP_R2	2	626.723876953125	2	627.288302	1252.56205	-0.75019	-0.00047059	-0.51426	-0.00032259	-1.2645	-0.00079318	627.2876682953828	78.776	0.40759	79.521	79.337	79.744	0.74473					14	7	3	0	0	0	0.93194	1	29845	29845		9.3831	3.6513	1	1656900	+		16169	16236	11708	11797	15811	15811					-0.05412707337632128
FYDKLCAKCY	10	Unmodified	_FYDKLCAKCY_					0	0	0			REV__ENSG00000013561|ENST00000394520|RNF14	REV__ENSG00000013561|ENST00000394520|RNF14	MULTI-MATCH	A375_MHC_IP_R1	1		2	627.288302	1252.56205	-0.58285	-0.00036561	0.63346	0.00039736	0.050615	3.175E-05	627.7901822620212	79.715	0.513	79.715	79.47	79.983	0	0.096969	0.00077354	NaN	5.7319	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1874900	+		16170	16236	11708	11797							-0.05412707337632128
FYEELQRD	8	Unmodified	_FYEELQRD_					0	0	0		ENST00000495250.2_1_22:45121127-45205177:+|nuORF	ENST00000495250.2_1_22:45121127-45205177:+|nuORF	ENST00000495250.2_1_22:45121127-45205177:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	550.6559448242188	2	550.256371	1098.49819	-0.37507	-0.00020639	-0.69886	-0.00038455	-1.0739	-0.00059094	550.2557738458017	72.34	0.55677	72.34	72.018	72.575	0					24	10	3	0	0	0	0.77562	1	26367	26367		10.824	2.0785	1	2404600			16171	12701	11709	11798	15812	15812					-0.0471202817871017
FYEESLCW	8	Unmodified	_FYEESLCW_					0	0	0			REV__ENST00000368972.7_1_6:109169675-109190117:+|nuORF	REV__ENST00000368972.7_1_6:109169675-109190117:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1076.3433837890625	1	1076.43936	1075.43208	0.091479	9.8472E-05	0.55184	0.00059402	0.64332	0.00069249	1076.4408978729969	120.8	0.30157	121.24	121.17	121.47	0.44488					6	5	2	0	0	0	0.972	1	46184	46184		6.3541	3.4649	1	33993000	+		16172	24004	11710	11799	15813	15813					-0.10261560345134058
FYELFKLF	8	Unmodified	_FYELFKLF_					0	0	0			REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MSMS	A375_MHC_IP_R1	1	553.7091064453125	2	553.799686	1105.58482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.12	1	103.12	102.62	103.62	0								0	0	0	0.16876	1	37892	37892		15.768	4.6538	1		+		16173	19903	11711	11800	15814	15814					0.0362500311380245
FYEMRRSLD	9	Unmodified	_FYEMRRSLD_					0	0	0			REV__GABRG2|p.G273E|1|0.18|ENSG00000113327|chr5:162142212-162142212|G/A|missense_variant	REV__GABRG2|p.G273E|1|0.18|ENSG00000113327|chr5:162142212-162142212|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	406.5913391113281	3	406.197491	1215.57064	-0.49324	-0.00020035	4.2783	0.0017379	3.7851	0.0015375	406.19979638035755	19.293	0.38484	19.293	19.238	19.623	0					11	7	2	0	0	0	0.69507	1	4905	4905		13.615	6.1378	1	2432500	+		16174	26661	11712	11801	15815	15815					-0.028520173767901724
FYEQWRERWPF	11	Unmodified	_FYEQWRERWPF_					0	0	0			REV__ENST00000367103.3_1_1:206907394-206907589:+|nuORF	REV__ENST00000367103.3_1_1:206907394-206907589:+|nuORF	MSMS	A375_MHC_IP_R2	2	822.3915405273438	2	822.391325	1642.7681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.386	1	88.118	87.618	88.618	0.73236								0	0	0	0.16355	1	33233	33233		0.26902	0.26902	1		+		16175	23952	11713	11802	15816	15816					-0.02757674842519009
FYETLLELEKK	11	Unmodified	_FYETLLELEKK_					0	0	0		tr|U7STA2|U7STA2_FUSNUTransposaseIS4-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01277PE=4SV=1	tr|U7STA2|U7STA2_FUSNUTransposaseIS4-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01277PE=4SV=1	tr|U7STA2|U7STA2_FUSNUTransposaseIS4-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01277PE=4SV=1	MSMS	A375_MHC_IP_R2	2	471.5716857910156	3	471.593904	1411.75988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.411	1	83.154	82.654	83.654	0.74293								0	0	0	0.16286	1	31304	31304		3.8459	1.4111	1				16176	29669	11714	11803	15817	15817					0.07047333397486
FYEVWGPRRQL	11	Unmodified	_FYEVWGPRRQL_					0	0	0			REV__nc|ENSG00000088888|Q7Z434-5|MAVS	REV__nc|ENSG00000088888|Q7Z434-5|MAVS	MSMS	A375_MHC_IP_R2	2	725.7178955078125	2	725.883136	1449.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.826	1	78.569	78.069	79.069	0.74293								0	0	0	0.16302	1	29553	29553		2.9952	0	1		+		16177	16896	11715	11804	15818	15818					0.04483243991398922
FYFFFLHKRF	10	Unmodified	_FYFFFLHKRF_					0	0	0		tr|U7SNV1|U7SNV1_FUSNUOligosacchariderepeatunitpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01958PE=4SV=1	tr|U7SNV1|U7SNV1_FUSNUOligosacchariderepeatunitpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01958PE=4SV=1	tr|U7SNV1|U7SNV1_FUSNUOligosacchariderepeatunitpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01958PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	726.7845458984375	2	726.384783	1450.75501	-0.72677	-0.00052791	1.6573	0.0012038	0.93051	0.00067591	726.3859185226103	70.064	0.40579	70.798	70.54	70.946	0.73421					11	7	2	0	0	0	0.71118	1	26584	26584		7.2892	0.18751	1	2977600			16178	29564	11716	11805	15819	15819					0.047665388360655925
FYFRIRYLLVQ	11	Unmodified	_FYFRIRYLLVQ_					0	0	0			REV__ENST00000526008.5_1_19:17949989-17958765:-|nuORF	REV__ENST00000526008.5_1_19:17949989-17958765:-|nuORF	MSMS	A375_MHC_IP_R2	2	759.623046875	2	759.435004	1516.85546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.87	1	101.64	101.14	102.14	0.76278								0	0	0	0.16331	1	38241	38241		1.4819	0.15237	1		+		16179	25767	11717	11806	15820	15820					0.11770151099062787
FYGIIRNV	8	Unmodified	_FYGIIRNV_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	A375_MHC_IP_R1	1	491.6795349121094	2	491.279452	980.544351	-0.18849	-9.2601E-05	-0.30787	-0.00015125	-0.49636	-0.00024385	491.27921640370226	72.478	1.6727	72.478	72.119	73.792	0					82	32	4	0	0	0	0.063083	3	26321	26301;26321;26539		101.72	49.454	1	25216000			16180	9866	11718	11807	15821;15822;15823	15822					0.05330081514034646
FYGIIRNV	8	Unmodified	_FYGIIRNV_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	A375_MHC_IP_R2	2	491.6790466308594	2	491.279452	980.544351	-0.82975	-0.00040764	0.088028	4.3246E-05	-0.74172	-0.00036439	491.27942939483154	71.575	1.417	72.309	72.061	73.478	0.73421					70	27	3	0	0	0	0.019775	2	27128	27128;27370		114.94	68.023	1	32832000			16181	9866	11718	11807	15824;15825	15824					0.05330081514034646
FYGLQPDSEY	10	Unmodified	_FYGLQPDSEY_					0	0	0		ENST00000432943.6_1_8:121160081-121289735:+|nuORF;nc|ENSG00000187955|Q05707-3|COL14A1;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1	ENST00000432943.6_1_8:121160081-121289735:+|nuORF	ENST00000432943.6_1_8:121160081-121289735:+|nuORF	MSMS	A375_MHC_IP_R2	2	609.722412109375	2	609.769311	1217.52407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.365	1	81.11	80.61	81.61	0.74474								0	0	0	0.15308	1	30509	30509		10.824	0.75	1				16182	8869	11719	11808	15826	15826					-0.0759917872708229
FYGRDYEY	8	Unmodified	_FYGRDYEY_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	A375_MHC_IP_R1	1	557.137939453125	2	556.737814	1111.46108	-0.50947	-0.00028364	0.18388	0.00010237	-0.32559	-0.00018127	556.7378086696683	44.043	1.022	44.043	43.553	44.575	0					55	19	5	0	0	0	0.7011	2	15286	15286;15509		34.402	7.5181	1	17562000			16183	9625	11720	11809	15827;15828	15827					-0.090196997244675
FYGRDYEY	8	Unmodified	_FYGRDYEY_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	A375_MHC_IP_R2	2	557.1371459960938	2	556.737814	1111.46108	-0.6253	-0.00034813	0.10926	6.0828E-05	-0.51604	-0.0002873	556.7378761849138	43.323	1.7193	44.095	43.573	45.292	0.7724					61	29	4	0	0	0	0.43631	1	16105	16105		51.63	24.746	1	19817000			16184	9625	11720	11809	15829	15829					-0.090196997244675
FYHGKKQY	8	Unmodified	_FYHGKKQY_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	MSMS	A375_MHC_IP_R2	2	535.67431640625	2	535.774534	1069.53451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.582	1	29.281	28.781	29.781	0.69872								0	0	0	0.16876	1	9886	9886		14.582	1.0738	1		+		16185	21924	11721	11810	15830	15830					0.002528935086729689
FYHLGHFSKF	10	Unmodified	_FYHLGHFSKF_					0	0	0		nc|ENSG00000177628|P04062-4|GBA1;nc|ENSG00000177628|P04062-5|GBA1;nc|ENSG00000177628|P04062-2|GBA1;ENSG00000177628|ENST00000368373|GBA1	nc|ENSG00000177628|P04062-4|GBA1	nc|ENSG00000177628|P04062-4|GBA1	MULTI-MSMS	A375_MHC_IP_R1	1	428.6183166503906	3	428.217102	1281.62948	0.027266	1.1676E-05	0.30146	0.00012909	0.32872	0.00014077	428.2175274021934	20.841	1.4751	20.841	20.03	21.505	0					82	28	5	0	0	0	0.70312	1	5250	5250		10.899	0	1	12095000			16186	8096	11722	11811	15831	15831					-7.173020162554167E-05
FYILFTIFTIK	11	Unmodified	_FYILFTIFTIK_					0	0	0		OR5K3|p.M226I|2|0.12|ENSG00000206536|chr3:98391343-98391343|G/A|missense_variant	OR5K3|p.M226I|2|0.12|ENSG00000206536|chr3:98391343-98391343|G/A|missense_variant	OR5K3|p.M226I|2|0.12|ENSG00000206536|chr3:98391343-98391343|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	469.6754150390625	3	469.275847	1404.80571	-0.4204	-0.00019728	0.073931	3.4694E-05	-0.34647	-0.00016259	469.27597252945856	137.55	0.55655	137.63	137.51	138.06	0.083969					18	10	3	0	0	0	0.73881	1	54000	54000		0.50596	0.051438	1	2368400			16187	15091	11723	11812	15832	15832					0.11950023370400231
FYILNATNY	9	Unmodified	_FYILNATNY_					0	0	0		nc|ENSG00000173809|Q587J7|TDRD12;ENSG00000173809|ENST00000639142|TDRD12;chr19:32749869-32755992|98|32.31|0.99|5.03|+|ENST00000647536|TDRD12,TDRD12;chr19:32748531-32749784|109|38.4|0.97|5.31|+|ENST00000647536|TDRD12,TDRD12	nc|ENSG00000173809|Q587J7|TDRD12	nc|ENSG00000173809|Q587J7|TDRD12	MSMS	A375_MHC_IP_R1	1	559.6976928710938	2	559.779482	1117.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.318	1	54.318	53.818	54.818	0								0	0	0	0.050211	1	19384	19384		53.833	23.196	1				16188	453	11724	11813	15833	15833					-0.009659632766442883
FYISADRM	8	Unmodified	_FYISADRM_					0	0	0		GRAMD1C|p.H336Y|2|0.31|ENSG00000178075|chr3:113915754-113915754|C/T|missense_variant	GRAMD1C|p.H336Y|2|0.31|ENSG00000178075|chr3:113915754-113915754|C/T|missense_variant	GRAMD1C|p.H336Y|2|0.31|ENSG00000178075|chr3:113915754-113915754|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	1002.4747924804688	1	1002.47133	1001.46405	0.42363	0.00042468	-2.7284	-0.0027352	-2.3048	-0.0023105	1002.4689646231079	117.21	0.8622	117.21	116.9	117.76	0					18	16	2	0	0	0	0.77603	1	43009	43009		9.3474	0	1	20179000			16189	14077	11725	11814	15834	15834					-0.03662147871318666
FYIWPCCH	8	Unmodified	_FYIWPCCH_					0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	MULTI-MSMS	A375_MHC_IP_R2	2	1068.4439697265625	1	1068.44301	1067.43573	0.13318	0.0001423	-0.056267	-6.0118E-05	0.076915	8.2179E-05	1068.4432213695538	119.18	3.9532	119.71	117.3	121.25	0.5321					122	77	2	0	0	0	0.77686	1	44565	44565		6.3541	0.59368	1	916140000	+		16190	21795	11726	11815	15835	15835					-0.09529169052257203
FYKDGDDIY	9	Unmodified	_FYKDGDDIY_					0	0	0			REV__tr|U7SKB1|U7SKB1_FUSNUCRISPR-associatedhelicasecas3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02172PE=3SV=1	REV__tr|U7SKB1|U7SKB1_FUSNUCRISPR-associatedhelicasecas3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02172PE=3SV=1	MSMS	A375_MHC_IP_R2	2	568.2539672851562	2	568.250754	1134.48696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.698	1	73.434	72.934	73.934	0.73541								0	0	0	0.15486	1	27591	27591		13.508	4.1604	1		+		16191	28249	11727	11816	15836	15836					-0.07490850272847638
FYKRYNKRAKW	11	Unmodified	_FYKRYNKRAKW_					0	0	0			REV__ENSG00000166866|ENST00000300119|MYO1A	REV__ENSG00000166866|ENST00000300119|MYO1A	MSMS	A375_MHC_IP_R2	2	780.435546875	2	780.433327	1558.8521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.685	1	72.42	71.92	72.92	0.73421								0	0	0	0.16334	1	27197	27197		1.3295	0.9789	1		+		16192	20712	11728	11817	15837	15837					0.09502901045061662
FYKTNIIKRI	10	Unmodified	_FYKTNIIKRI_					0	0	0			REV__ENSG00000205029|ENST00000378396|OR5D16	REV__ENSG00000205029|ENST00000378396|OR5D16	MULTI-MSMS	A375_MHC_IP_R2	2	648.7965087890625	2	648.395348	1294.77614	-0.48826	-0.00031659	-2.3128	-0.0014996	-2.8011	-0.0018162	648.3938693280054	142.53	1.4234	142.56	141.36	142.79	0.030731					35	27	2	0	0	0	0.72416	1	55663	55663		1.4819	0	1	4575300	+		16193	22554	11729	11818	15838	15838					0.14054504144905877
FYLIDDRQ	8	Unmodified	_FYLIDDRQ_					0	0	0			REV__nc|ENSG00000292363|Q9HC73-2|CRLF2	REV__nc|ENSG00000292363|Q9HC73-2|CRLF2	MULTI-SECPEP	A375_MHC_IP_R2	2	1069.6983642578125	1	1069.53129	1068.52401	0.098378	0.00010522	-0.89682	-0.00095917	-0.79844	-0.00085395	1069.5303607575852	120.46	0.95781	121	120.65	121.61	0.5321					22	18	2	0	0	0	0.972	1	45891	45891		6.3541	2.7576	1	51149000	+		16194	22582	11730	11819	15839	15839					-0.00751133936455517
FYLKQGQVLFY	11	Unmodified	_FYLKQGQVLFY_					0	0	0			REV__ENSG00000274588|ENST00000611977|DGKK	REV__ENSG00000274588|ENST00000611977|DGKK	MSMS	A375_MHC_IP_R1	1	703.3246459960938	2	703.379363	1404.74417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.73	1	106.73	106.23	107.23	0								0	0	0	0.16297	1	39172	39172		3.2813	0.28607	1		+		16195	22958	11731	11820	15840	15840					0.05799091671133283
FYLLAFFYYLY	11	Unmodified	_FYLLAFFYYLY_					0	0	0		ENST00000554683.1_1_14:54894534-54903393:-|nuORF;ENSG00000100528|ENST00000216416|CNIH1	ENST00000554683.1_1_14:54894534-54903393:-|nuORF	ENST00000554683.1_1_14:54894534-54903393:-|nuORF	MSMS	A375_MHC_IP_R1	1	762.2859497070312	2	761.88649	1521.75843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.615	1	92.615	92.115	93.115	0								0	0	0	0.1629	1	34039	34039		3.5965	0.31518	1				16196	2190	11732	11821	15841	15841					0.018417440994426215
FYLLRHNL	8	Unmodified	_FYLLRHNL_					0	0	0			REV__ENST00000426654.6_1_16:69727998-69728070:+|nuORF	REV__ENST00000426654.6_1_16:69727998-69728070:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	538.0548095703125	2	538.306001	1074.59745	-0.62365	-0.00033571	-2.0193	-0.001087	-2.6429	-0.0014227	538.3044100182319	95.213	0.3077	95.963	95.785	96.093	0.75045					9	5	2	0	0	0	0.92215	1	36170	36170		5.7604	0	1	668330	+		16197	24654	11733	11822	15842	15842					0.06313459296711699
FYLQRYNFRWW	11	Unmodified	_FYLQRYNFRWW_					0	0	0			REV__ENST00000460870.1_1_1:208383501-208390355:-|nuORF	REV__ENST00000460870.1_1_1:208383501-208390355:-|nuORF	MSMS	A375_MHC_IP_R2	2	839.8977661132812	2	839.91751	1677.82047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.18	1	115.87	115.37	116.37	0.68999								0	0	0	0.16358	1	43416	43416		0.35063	0.35063	1		+		16198	24971	11734	11823	15843	15843					0.008669082910955694
FYLRRLKYPKW	11	Unmodified	_FYLRRLKYPKW_					0	0	0			REV__nc|ENSG00000086991|Q9NPH5-3|NOX4	REV__nc|ENSG00000086991|Q9NPH5-3|NOX4	MULTI-SECPEP	A375_MHC_IP_R2	2	524.6915893554688	3	523.973273	1568.89799	-0.70514	-0.00036947	0.28897	0.00015141	-0.41617	-0.00021806	524.3076865659799	96.943	1.9292	97.699	97.419	99.348	0.75586					44	37	2	0	0	0	1.0014	1	36932	36932		0.094841	0.011491	1	55799000	+		16199	15683	11735	11824	15844	15844					0.13629546227298306
FYNPNLKKV	9	Unmodified	_FYNPNLKKV_					0	0	0		ENSG00000164292|ENST00000379982|RHOBTB3;ENST00000504949.1_1_5:95067575-95091515:+|nuORF	ENSG00000164292|ENST00000379982|RHOBTB3	ENSG00000164292|ENST00000379982|RHOBTB3	MULTI-SECPEP	A375_MHC_IP_R2	2	375.27655029296875	3	374.88172	1121.62333	0.27646	0.00010364	0.51318	0.00019238	0.78963	0.00029602	374.881834793	32.528	0.40669	33.265	33.112	33.518	0.73692					11	7	2	0	0	0	0.69507	1	11641	11641		9.544	9.544	1	1202300			16200	6813	11736	11825	15845	15845					0.0673830874829946
FYPRIKLNR	9	Unmodified	_FYPRIKLNR_					0	0	0			REV__ENSG00000133980|ENST00000256362|VRTN	REV__ENSG00000133980|ENST00000256362|VRTN	MSMS	A375_MHC_IP_R2	2	402.9541015625	3	402.90838	1205.70331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.299	1	19.902	19.402	20.402	0.60308								0	0	0	0.15486	1	5915	5915		2.7352	0.23671	1		+		16201	18744	11737	11826	15846	15846					0.10868795142164345
FYPWLIHRYRY	11	Unmodified	_FYPWLIHRYRY_					0	0	0		nc|ENSG00000170370|Q04743-2|EMX2;ENSG00000170370|ENST00000553456|EMX2	nc|ENSG00000170370|Q04743-2|EMX2	nc|ENSG00000170370|Q04743-2|EMX2	MSMS	A375_MHC_IP_R2	2	807.4152221679688	2	807.422428	1612.8303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.792	1	96.543	96.043	97.043	0.75045								0	0	0	0.16331	1	36382	36382		1.4819	0.15237	1				16202	7499	11738	11827	15847	15847					0.04840096296493357
FYQLPSNQY	9	Unmodified	_FYQLPSNQY_					0	0	0		ENSG00000118113|ENST00000236826|MMP8;ENST00000528662.6_1_11:102584081-102593757:-|nuORF;MMP8|p.E38K|1|0.29|ENSG00000118113|chr11:102722664-102722664|C/T|missense_variant	ENSG00000118113|ENST00000236826|MMP8	ENSG00000118113|ENST00000236826|MMP8	MSMS	A375_MHC_IP_R1	1	580.2008056640625	2	580.274564	1158.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.073	1	97.073	96.573	97.573	0								0	0	0	0.1535	1	35668	35668		15.847	4.2069	1				16203	3525	11739	11828	15848	15848					-0.03835151282009974
FYQNHRRYV	9	Unmodified	_FYQNHRRYV_					0	0	0		nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	MULTI-MSMS	A375_MHC_IP_R2	2	428.6180419921875	3	428.219506	1281.63669	-0.47342	-0.00020273	-0.45236	-0.00019371	-0.92578	-0.00039644	428.2188119473054	19.126	0.73761	19.729	19.452	20.19	0.60308					34	14	4	0	0	0	0.34064	1	5824	5824		27.629	12.672	1	15093000			16204	3103	11740	11829	15849	15849					0.007135595802765238
FYSIMRIYS	9	Unmodified	_FYSIMRIYS_					0	0	0		FAM216B|p.N51S|1|0.25|ENSG00000179813|chr13:42786815-42786815|A/G|missense_variant	FAM216B|p.N51S|1|0.25|ENSG00000179813|chr13:42786815-42786815|A/G|missense_variant	FAM216B|p.N51S|1|0.25|ENSG00000179813|chr13:42786815-42786815|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	1180.5863037109375	1	1179.58669	1178.57942	0.21122	0.00024915	-1.1394	-0.001344	-0.92819	-0.0010949	1180.5859184845033	120.12	0.40845	120.65	120.29	120.7	0.5321					14	7	2	0	0	0	0.65721	1	45817	45817		10.824	0.024421	1	38673000			16205	13971	11741	11830	15850	15850					-0.002730437402988173
FYSNLPTY	8	Unmodified	_FYSNLPTY_					0	0	0		ENSG00000274391|ENST00000618007|TPTE;nc|ENSG00000274391|P56180-4|TPTE;nc|ENSG00000274391|P56180-3|TPTE;nc|ENSG00000274391|P56180-2|TPTE	ENSG00000274391|ENST00000618007|TPTE	ENSG00000274391|ENST00000618007|TPTE	MSMS	A375_MHC_IP_R1	1	502.6580505371094	2	502.739825	1003.4651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.916	1	86.916	86.416	87.416	0								0	0	0	0.16876	1	31881	31881		19.439	4.8573	1				16206	10002	11742	11831	15851	15851					-0.03649610230763756
FYTCLLQPS	9	Unmodified	_FYTCLLQPS_					0	0	0		ENST00000435030.1_2:149879593-149879722:+|nuORF	ENST00000435030.1_2:149879593-149879722:+|nuORF	ENST00000435030.1_2:149879593-149879722:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	536.2255249023438	2	536.26261	1070.51067	-0.94374	-0.00050609	0.99882	0.00053563	0.055085	2.954E-05	536.2638143564227	32.513	0.25129	32.513	32.383	32.634	0					6	4	2	0	0	0	0.74412	1	10467	10467		10.074	0	1	842840			16207	11904	11743	11832	15852	15852					-0.021767080400195482
FYTESYELFIF	11	Unmodified	_FYTESYELFIF_					0	0	0			REV__ENST00000468295.1_1_11:28349625-28349682:+|nuORF	REV__ENST00000468295.1_1_11:28349625-28349682:+|nuORF	MSMS	A375_MHC_IP_R2	2	729.796630859375	2	729.845019	1457.67548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.21	1	123.59	123.09	124.09	0.3766								0	0	0	0.16249	1	47307	47307		5.7319	2.1354	1		+		16208	25079	11744	11833	15853	15853					-0.03504617419253009
FYTIILIG	8	Unmodified	_FYTIILIG_					0	0	0		OR4K1|p.S217F|1|0.33|ENSG00000155249|chr14:19936316-19936316|C/T|missense_variant	OR4K1|p.S217F|1|0.33|ENSG00000155249|chr14:19936316-19936316|C/T|missense_variant	OR4K1|p.S217F|1|0.33|ENSG00000155249|chr14:19936316-19936316|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	470.308837890625	2	470.281129	938.547705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.774	1	24.404	23.904	24.904	0.63014								0	0	0	0.16876	1	7704	7704		9.3474	0	1				16209	15077	11745	11834	15854	15854					0.07597331568047139
FYTKLIQR	8	Unmodified	_FYTKLIQR_					0	0	0			REV__ENST00000357727.6_1_7:28452319-28452490:+|nuORF	REV__ENST00000357727.6_1_7:28452319-28452490:+|nuORF	MSMS	A375_MHC_IP_R1	1	356.5914306640625	3	356.878198	1067.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.47	1	53.47	52.97	53.97	0								0	0	0	0.16876	1	19065	19065		3.5965	0.60125	1		+		16210	23846	11746	11835	15855	15855					0.08166326093896714
FYVEHPEV	8	Unmodified	_FYVEHPEV_					0	0	0		ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	510.45147705078125	2	510.245275	1018.476	-0.31926	-0.0001629	0.21336	0.00010887	-0.1059	-5.4036E-05	510.2454308871731	54.331	1.1132	54.331	53.962	55.075	0					39	21	3	0	0	0	0.77651	1	19421	19421		42.095	26.247	1	3040300			16211	2131	11747	11836	15856	15856					-0.03250207856478937
FYVPLPRHL	9	Unmodified	_FYVPLPRHL_					0	0	0		ENSG00000125827|ENST00000246024|TMX4	ENSG00000125827|ENST00000246024|TMX4	ENSG00000125827|ENST00000246024|TMX4	MULTI-MSMS	A375_MHC_IP_R1	1	381.6224365234375	3	381.222076	1140.6444	0.19131	7.2933E-05	0.040336	1.5377E-05	0.23165	8.831E-05	381.2220534117632	80.466	1.1168	80.466	80.034	81.151	0					61	21	4	0	0	0	0.082375	1	29296	29296		53.833	43.033	1	40627000			16212	3997	11748	11837	15857	15857					0.07970318847856106
FYVPLPRHL	9	Unmodified	_FYVPLPRHL_					0	0	0		ENSG00000125827|ENST00000246024|TMX4	ENSG00000125827|ENST00000246024|TMX4	ENSG00000125827|ENST00000246024|TMX4	MULTI-MSMS	A375_MHC_IP_R2	2	381.6221008300781	3	381.222076	1140.6444	0.06083	2.319E-05	0.062022	2.3644E-05	0.12285	4.6834E-05	381.2220431752096	79.434	0.91257	80.179	79.796	80.708	0.74474					56	17	4	0	0	0	0.082375	2	30089	30089;30313		53.833	43.033	1	29239000			16213	3997	11748	11837	15858;15859	15858					0.07970318847856106
FYVSGPSFIS	10	Unmodified	_FYVSGPSFIS_					0	0	0			REV__nc|ENSG00000131480|O75106-2|AOC2	REV__nc|ENSG00000131480|O75106-2|AOC2	MULTI-MSMS	A375_MHC_IP_R2	2	552.67431640625	2	552.274032	1102.53351	-0.61273	-0.0003384	0.36151	0.00019965	-0.25122	-0.00013874	552.2743116605218	110.66	0.66085	111.39	111.14	111.8	0.73691					19	12	2	0	0	0	0.40101	1	41734	41734		34.102	5.6156	1	2206200	+		16214	18609	11749	11838	15860	15860					-0.013653656508950007
FYWWEFIRQWI	11	Unmodified	_FYWWEFIRQWI_					0	0	0			REV__ENST00000480988.5_1_1:113119662-113161548:-|nuORF	REV__ENST00000480988.5_1_1:113119662-113161548:-|nuORF	MSMS	A375_MHC_IP_R2	2	837.318115234375	2	837.416811	1672.81907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.81	1	121.25	120.75	121.75	0.44488								0	0	0	0.16331	1	46140	46140		1.4819	1.1749	1		+		16215	25252	11750	11839	15861	15861					0.009572742023465253
FYYFIFVRFFF	11	Unmodified	_FYYFIFVRFFF_					0	0	0			REV__ENST00000220003.13_1_15:75095155-75095200:+|nuORF	REV__ENST00000220003.13_1_15:75095155-75095200:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	532.2059326171875	3	532.607708	1594.80129	-0.56135	-0.00029898	-1.1679	-0.00062202	-1.7292	-0.000921	532.606896514258	51.1	0.40595	51.1	50.864	51.27	0					12	7	2	0	0	0	1.0011	1	18166	18166		0.45452	0	1	3240700	+		16216	23048	11751	11840	15862	15862					0.027685589474685912
FYYFMAKI	8	Unmodified	_FYYFMAKI_					0	0	0		ENST00000524121.1_1_8:56663477-56668953:-|nuORF;nc|ENSG00000167904|Q96MH6-2|TMEM68;ENSG00000167904|ENST00000434581|TMEM68	ENST00000524121.1_1_8:56663477-56668953:-|nuORF	ENST00000524121.1_1_8:56663477-56668953:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	361.91729736328125	3	361.517501	1081.53067	-0.05439	-1.9663E-05	-0.23272	-8.4132E-05	-0.28711	-0.00010379	361.51730294776036	38.419	0.46088	38.419	38.218	38.679	0					16	8	3	0	0	0	0.972	1	13052	13052		3.5965	1.098	1	4519500			16217	7235	11752	11841	15863	15863					-0.006829123094121314
FYYIQMEKY	9	Unmodified	_FYYIQMEKY_					0	0	0		ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	MSMS	A375_MHC_IP_R2	2	642.7645263671875	2	642.8021	1283.58965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.815	1	97.571	97.071	98.071	0.75586								0	0	0	0.15486	1	36752	36752		9.3474	4.1168	1				16218	3508	11753	11842	15864	15864					-0.04080480805737352
FYYKSFTYIPF	11	Unmodified	_FYYKSFTYIPF_					0	0	0			REV__ENST00000481603.1_1_11:5631742-5632569:+|nuORF	REV__ENST00000481603.1_1_11:5631742-5632569:+|nuORF	MSMS	A375_MHC_IP_R1	1	492.4775390625	3	492.579706	1474.71729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.149	1	44.149	43.649	44.649	0								0	0	0	0.16301	1	15391	15391		3.0723	1.8574	1		+		16219	18152	11754	11843	15865	15865					-0.001080169400665909
FYYMNHTIFNF	11	Unmodified	_FYYMNHTIFNF_					0	0	0			REV__ENST00000424085.6_1_1:31405847-31406009:-|nuORF	REV__ENST00000424085.6_1_1:31405847-31406009:-|nuORF	MSMS	A375_MHC_IP_R1	1	499.4853820800781	3	499.560429	1495.65946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.64	1	60.64	60.14	61.14	0								0	0	0	0.16334	1	21836	21836		1.3296	0.63198	1		+		16220	24622	11755	11844	15866	15866					-0.06854602137150323
FYYVVPDLM	9	Unmodified	_FYYVVPDLM_					0	0	0			REV__ENSG00000182782|ENST00000328880|HCAR2	REV__ENSG00000182782|ENST00000328880|HCAR2	MULTI-MSMS	A375_MHC_IP_R2	2	573.6784057617188	2	573.780636	1145.54672	-0.078048	-4.4782E-05	0.63551	0.00036465	0.55747	0.00031986	573.7807786542746	110.3	0.4099	111.04	110.78	111.19	0.73692					11	7	2	0	0	0	0.63811	1	41589	41589		12.532	0	1	1099800	+		16221	21708	11756	11845	15867	15867					-0.020232508631806922
FYYWWIFYILY	11	Unmodified	_FYYWWIFYILY_					0	0	0			REV__tr|U7SSI1|U7SSI1_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01276PE=4SV=1	REV__tr|U7SSI1|U7SSI1_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01276PE=4SV=1	MSMS	A375_MHC_IP_R1	1	559.6690063476562	3	559.611118	1675.81152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.398	1	21.398	20.898	21.898	0								0	0	0	0.1635	1	5622	5622		0.50596	0.41111	1		+		16222	28430	11757	11846	15868	15868					0.0006512188208489533
GAAAMDRVHDI	11	Unmodified	_GAAAMDRVHDI_					0	0	0			REV__ENST00000464697.1_1_12:110825679-110841468:-|nuORF	REV__ENST00000464697.1_1_12:110825679-110841468:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	386.28167724609375	3	385.857357	1154.55024	0.41175	0.00015888	-1.7931	-0.00069188	-1.3813	-0.000533	386.1914558473571	20.81	0.25734	20.81	20.638	20.895	0					6	4	2	0	0	0	0.99227	1	5366	5366		0.073264	0	1	892720	+		16223	22205	11758	11847	15869	15869					-0.020851880366080877
GAAARGAAGPL	11	Unmodified	_GAAARGAAGPL_					0	0	0			REV__ENST00000494813.5_1_X:153187159-153200402:-|nuORF	REV__ENST00000494813.5_1_X:153187159-153200402:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	456.65655517578125	2	456.256508	910.498464	-0.30305	-0.00013827	1.892	0.00086323	1.5889	0.00072496	456.2563373300365	64.695	0.45902	64.695	64.495	64.954	0					13	8	2	0	0	0	0.72565	1	23431	23431		13.042	0.51092	1	1539500	+		16224	25441	11759	11848	15870	15870					0.039634363317986754
GAACASHC	8	Unmodified	_GAACASHC_					0	0	0			REV__ENST00000369630.7_1_1:113264878-113266594:+|nuORF	REV__ENST00000369630.7_1_1:113264878-113266594:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	720.05224609375	1	719.259955	718.252679	-0.54416	-0.00039139	-0.44796	-0.0003222	-0.99212	-0.00071359	719.2596108946045	103.7	0.6109	103.7	103.42	104.03	0					20	11	2	0	0	0	0.972	1	38185	38185		0	0	1	3170100	+		16225	23926	11760	11849	15871	15871					-0.11771723114054566
GAADGIRLY	9	Unmodified	_GAADGIRLY_					0	0	0		nc|ENSG00000153560|Q9NZI7-4|UBP1;ENSG00000153560|ENST00000283629|UBP1;ENST00000490112.1_1_3:33438535-33441732:-|nuORF;ENST00000486388.5_1_3:33438291-33450199:-|nuORF	nc|ENSG00000153560|Q9NZI7-4|UBP1	nc|ENSG00000153560|Q9NZI7-4|UBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	467.66265869140625	2	468.250892	934.48723	-0.35164	-0.00016466	0.1257	5.8861E-05	-0.22594	-0.00010579	468.25095374197	58.174	0.35516	58.174	58.024	58.379	0					12	6	2	0	0	0	0.13064	1	20889	20889		47.749	22.349	1	1706100			16226	6036	11761	11850	15872	15872					0.017366142376431526
GAADGIRLY	9	Unmodified	_GAADGIRLY_					0	0	0		nc|ENSG00000153560|Q9NZI7-4|UBP1;ENSG00000153560|ENST00000283629|UBP1;ENST00000490112.1_1_3:33438535-33441732:-|nuORF;ENST00000486388.5_1_3:33438291-33450199:-|nuORF	nc|ENSG00000153560|Q9NZI7-4|UBP1	nc|ENSG00000153560|Q9NZI7-4|UBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	468.65032958984375	2	468.250892	934.48723	-0.97073	-0.00045454	-0.21718	-0.00010169	-1.1879	-0.00055624	468.25078417289194	57.416	0.35498	58.164	57.968	58.323	0.74894					16	6	4	0	0	0	0.38578	1	21753	21753		27.629	3.6082	1	1665000			16227	6036	11761	11850	15873	15873					0.017366142376431526
GAADRLLQAV	10	Unmodified	_GAADRLLQAV_					0	0	0		OR2T8|p.G154R|1|0.21|ENSG00000177462|chr1:247921477-247921477|G/A|missense_variant	OR2T8|p.G154R|1|0.21|ENSG00000177462|chr1:247921477-247921477|G/A|missense_variant	OR2T8|p.G154R|1|0.21|ENSG00000177462|chr1:247921477-247921477|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	507.69024658203125	2	507.290548	1012.56654	-0.69674	-0.00035345	0.95396	0.00048393	0.25722	0.00013048	507.2905748719476	41.651	0.86646	41.651	41.266	42.132	0					52	16	4	0	0	0	0.040108	1	14330	14330		78.728	6.8058	1	60181000			16228	15074	11762	11851	15874	15874					0.060762611917994036
GAADRLLQAV	10	Unmodified	_GAADRLLQAV_					0	0	0		OR2T8|p.G154R|1|0.21|ENSG00000177462|chr1:247921477-247921477|G/A|missense_variant	OR2T8|p.G154R|1|0.21|ENSG00000177462|chr1:247921477-247921477|G/A|missense_variant	OR2T8|p.G154R|1|0.21|ENSG00000177462|chr1:247921477-247921477|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	507.6901550292969	2	507.290548	1012.56654	-0.92346	-0.00046846	0.93198	0.00047279	0.0085282	4.3263E-06	507.2906515804772	40.744	0.86462	41.518	41.234	42.098	0.77451					49	16	4	0	0	0	0.040108	1	15054	15054		78.728	6.8058	1	76014000			16229	15074	11762	11851	15875	15875					0.060762611917994036
GAAEEQSSH	9	Unmodified	_GAAEEQSSH_					0	0	0		tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	MSMS	A375_MHC_IP_R2	2	458.15814208984375	2	458.193771	914.372988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.851	1	93.59	93.09	94.09	0.73902								0	0	0	0.15486	1	35305	35305		7.2892	0	1				16230	29667	11763	11852	15876	15876					-0.08762320315088346
GAAGLEVEDL	10	Unmodified	_GAAGLEVEDL_					0	0	0		ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	MULTI-SECPEP	A375_MHC_IP_R2	2	486.6792297363281	2	487.245472	972.476391	-0.50495	-0.00024604	-1.0162	-0.00049512	-1.5211	-0.00074116	487.2445621528519	48.18	0.75412	48.939	48.579	49.333	0.75871					32	14	3	0	0	0	0.48072	1	18082	18082		37.974	5.6685	1	5531300			16231	2288	11764	11853	15877	15877					-0.01094832927265088
GAAGRQDFLF	10	Unmodified	_GAAGRQDFLF_					0	0	0		ENSG00000103888|ENST00000394685|CEMIP;nc|ENSG00000103888|Q8WUJ3-2|CEMIP	ENSG00000103888|ENST00000394685|CEMIP	ENSG00000103888|ENST00000394685|CEMIP	MULTI-SECPEP	A375_MHC_IP_R1	1	541.644775390625	2	541.274898	1080.53524	-0.62341	-0.00033744	-1.3255	-0.00071747	-1.9489	-0.0010549	541.2747082999026	73.745	0.45606	73.745	73.437	73.893	0					18	8	3	0	0	0	0.72086	1	26835	26835		18.146	0	1	1538300			16232	2473	11765	11854	15878	15878					-0.001803118423140404
GAAIRQTSF	9	Unmodified	_GAAIRQTSF_					0	0	0		ENSG00000074266|ENST00000263360|EED;nc|ENSG00000074266|O75530-2|EED;ENST00000327320.8_2_11:85989390-85989564:+|nuORF;ENST00000528250.1_1_11:85988947-85989564:+|nuORF	ENSG00000074266|ENST00000263360|EED	ENSG00000074266|ENST00000263360|EED	MULTI-SECPEP	A375_MHC_IP_R1	1	476.15625	2	475.756341	949.498129	-0.47982	-0.00022828	0.35678	0.00016974	-0.12304	-5.8537E-05	475.75642353333507	31.635	0.81612	31.635	31.363	32.179	0					36	15	4	0	0	0	0.01128	1	10108	10108		126.57	54.644	1	16150000			16233	1579	11766	11855	15879	15879					0.02136016611962077
GAAKAKKDLV	10	Unmodified	_GAAKAKKDLV_					0	0	0		nc|ENSG00000163673|Q9C098|DCLK3;ENSG00000163673|ENST00000636136|DCLK3	nc|ENSG00000163673|Q9C098|DCLK3	nc|ENSG00000163673|Q9C098|DCLK3	MULTI-SECPEP	A375_MHC_IP_R1	1	501.21063232421875	2	500.811116	999.60768	-0.27871	-0.00013958	-0.24349	-0.00012194	-0.52221	-0.00026153	500.81095675281864	35.957	0.50858	35.957	35.727	36.236	0					20	9	3	0	0	0	0.78945	1	11990	11990		25.399	25.399	1	10323000			16234	6705	11767	11856	15880	15880					0.10786022231275183
GAAKAKKDLV	10	Unmodified	_GAAKAKKDLV_					0	0	0		nc|ENSG00000163673|Q9C098|DCLK3;ENSG00000163673|ENST00000636136|DCLK3	nc|ENSG00000163673|Q9C098|DCLK3	nc|ENSG00000163673|Q9C098|DCLK3	MULTI-SECPEP	A375_MHC_IP_R2	2	501.1402282714844	2	500.811116	999.60768	-0.80414	-0.00040272	-0.020804	-1.0419E-05	-0.82494	-0.00041314	500.8110684228476	34.969	0.55557	35.733	35.525	36.081	0.76338					24	10	4	0	0	0	0.78945	1	12627	12627		25.399	2.663	1	9172700			16235	6705	11767	11856	15881	15881					0.10786022231275183
GAALIRGDR	9	Unmodified	_GAALIRGDR_					0	0	0			REV__ENST00000524307.5_1_8:124089445-124141439:+|nuORF	REV__ENST00000524307.5_1_8:124089445-124141439:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	465.16986083984375	2	464.769783	927.525013	-0.41254	-0.00019174	0.18759	8.7188E-05	-0.22495	-0.00010455	464.76979602484766	113.85	2.4366	114.56	113.72	116.16	0.70985					93	47	2	0	0	0	0.71416	2	42667	42667;43322		5.7319	0.50118	1	17548000	+		16236	19996	11768	11857	15882;15883	15882					0.05835125223131854
GAALIRGDR	9	Unmodified	_GAALIRGDR_					0	0	0			REV__ENST00000524307.5_1_8:124089445-124141439:+|nuORF	REV__ENST00000524307.5_1_8:124089445-124141439:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	464.769783	927.525013	-0.41254	-0.00019174	0.18759	8.7188E-05	-0.22495	-0.00010455	464.76979602484766	113.85	2.4366	114.56	113.72	116.16	0.70985	0.10973	7.6958E-05	NaN	5.7319	93	47	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17548000	+		16237	19996	11768	11857							0.05835125223131854
GAALQRAY	8	Unmodified	_GAALQRAY_					0	0	0			REV__ENSG00000104774|ENST00000456935|MAN2B1	REV__ENSG00000104774|ENST00000456935|MAN2B1	MULTI-SECPEP	A375_MHC_IP_R1	1	425.6103210449219	2	425.232502	848.450451	-0.16257	-6.9129E-05	0.058371	2.4821E-05	-0.1042	-4.4308E-05	425.2324411712751	33.317	0.152	33.317	33.19	33.342	0					4	2	2	0	0	0	0.97144	1	10822	10822		5.2307	0.47466	1	980040	+		16238	17337	11769	11858	15884	15884					0.020163624117572
GAANCDVKSN	10	Unmodified	_GAANCDVKSN_					0	0	0			REV__nc|ENSG00000140945|P55290-5|CDH13	REV__nc|ENSG00000140945|P55290-5|CDH13	MSMS	A375_MHC_IP_R1	1	489.67962646484375	2	489.719098	977.423644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.452	1	25.452	24.952	25.952	0								0	0	0	0.15435	1	7428	7428		6.7232	0	1		+		16239	19234	11770	11859	15885	15885					-0.0659711426172862
GAARLALL	8	Unmodified	_GAARLALL_					0	0	0		nc|ENSG00000197948|Q86WN1-2|FCHSD1;nc|ENSG00000197948|Q86WN1-3|FCHSD1;ENSG00000197948|ENST00000435817|FCHSD1	nc|ENSG00000197948|Q86WN1-2|FCHSD1	nc|ENSG00000197948|Q86WN1-2|FCHSD1	MULTI-MSMS	A375_MHC_IP_R1	1	392.65814208984375	2	392.755613	783.496673	-0.04376	-1.7187E-05	0.55715	0.00021882	0.51339	0.00020164	392.75570598408973	65.66	0.50919	65.66	65.462	65.972	0					16	9	2	0	0	0	0.72008	1	23788	23788		28.487	0	1	1594800			16240	9210	11771	11860	15886	15886					0.09626427313855856
GAARLALL	8	Unmodified	_GAARLALL_					0	0	0		nc|ENSG00000197948|Q86WN1-2|FCHSD1;nc|ENSG00000197948|Q86WN1-3|FCHSD1;ENSG00000197948|ENST00000435817|FCHSD1	nc|ENSG00000197948|Q86WN1-2|FCHSD1	nc|ENSG00000197948|Q86WN1-2|FCHSD1	MULTI-SECPEP	A375_MHC_IP_R2	2	393.15570068359375	2	392.755613	783.496673	-0.15177	-5.9609E-05	0.43204	0.00016969	0.28027	0.00011008	392.7557058987035	64.681	0.50935	65.421	65.106	65.615	0.74022					16	9	2	0	0	0	0.44468	1	24507	24507		53.576	0	1	1769000			16241	9210	11771	11860	15887	15887					0.09626427313855856
GAATNLDFSF	10	Unmodified	_GAATNLDFSF_					0	0	0			REV__TRIM35|p.P308L|1|0.36|ENSG00000104228|chr8:27288109-27288109|G/A|missense_variant	REV__TRIM35|p.P308L|1|0.36|ENSG00000104228|chr8:27288109-27288109|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	523.6697998046875	2	521.745639	1041.47673	-0.5	-0.00026087	0.16788	8.7591E-05	-0.33212	-0.00017328	521.7457170453018	60.286	1.7318	60.286	59.803	61.534	0					83	33	5	0	0	0	0.70146	1	21628	21628		11.64	0	1	197010000	+		16242	28902	11772	11861	15888	15888					-0.04235413207425154
GACCGSSC	8	Unmodified	_GACCGSSC_					0	0	0		KRTAP17-1|p.G74A|1|0.36|ENSG00000186860|chr17:41315430-41315430|C/G|missense_variant	KRTAP17-1|p.G74A|1|0.36|ENSG00000186860|chr17:41315430-41315430|C/G|missense_variant	KRTAP17-1|p.G74A|1|0.36|ENSG00000186860|chr17:41315430-41315430|C/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	686.8685913085938	1	687.189493	686.182216	-0.63125	-0.00043379	-0.17906	-0.00012305	-0.81031	-0.00055683	687.1912104803082	103.74	0.30446	104.5	104.24	104.55	0.76428					8	5	2	0	0	0	0.972	1	39256	39256		0	0	1	916400			16243	14238	11773	11862	15889	15889					-0.1734276449403751
GACCHCQG	8	Unmodified	_GACCHCQG_					0	0	0		ENST00000545908.5_2_14:64909035-64914948:+|nuORF;ENST00000556771.5_1_14:64909035-64911499:+|nuORF	ENST00000545908.5_2_14:64909035-64914948:+|nuORF	ENST00000545908.5_2_14:64909035-64914948:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	778.0814819335938	1	778.242925	777.235649	-0.92892	-0.00072292	-4.1533	-0.0032322	-5.0822	-0.0039552	778.2410650843018	125.08	0.35384	125.39	125.08	125.43	0.30589					8	6	2	0	0	0	0.972	1	48398	48398		0	0	1	12935000			16244	13327	11774	11863	15890	15890					-0.161879669915038
GACKKMHIL	9	Unmodified	_GACKKMHIL_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-SECPEP	A375_MHC_IP_R2	2	501.1455383300781	2	500.775165	999.535777	-0.77339	-0.0003873	-0.72434	-0.00036273	-1.4977	-0.00075003	500.7748236747308	37.81	0.66806	38.585	38.175	38.843	0.77451					20	12	2	0	0	0	0.71541	1	13803	13803		7.2892	7.2892	1	2853900			16245	5242	11775	11864	15891	15891					0.03599068281550899
GACLGYPLGNI	11	Unmodified	_GACLGYPLGNI_					0	0	0			REV__ENSG00000198795|ENST00000361524|ZNF521	REV__ENSG00000198795|ENST00000361524|ZNF521	MSMS	A375_MHC_IP_R2	2	539.22021484375	2	539.273509	1076.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.471	1	88.203	87.703	88.703	0.7318								0	0	0	0.15377	1	33266	33266		18.146	0	1		+		16246	22421	11776	11865	15892	15892					-0.002739032914632844
GACWLPCSFLP	11	Unmodified	_GACWLPCSFLP_					0	0	0		ENST00000467586.5_1_17:74084367-74085867:-|nuORF	ENST00000467586.5_1_17:74084367-74085867:-|nuORF	ENST00000467586.5_1_17:74084367-74085867:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	399.2996520996094	3	398.520917	1192.54092	-0.038969	-1.553E-05	2.2258	0.00088702	2.1868	0.00087149	398.521209039923	27.619	0.45553	28.297	28.047	28.502	0.67857					26	8	4	0	0	0	0.99606	1	9375	9375		1.3296	0	1	4552400			16247	12281	11777	11866	15893	15893					-0.047646726464790845
GADAGPQCCL	10	Unmodified	_GADAGPQCCL_					0	0	0		ENST00000372870.5_1_9:131103082-131105463:+|nuORF	ENST00000372870.5_1_9:131103082-131105463:+|nuORF	ENST00000372870.5_1_9:131103082-131105463:+|nuORF	MSMS	A375_MHC_IP_R2	2	467.6004638671875	2	467.691495	933.368437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.91	1	34.662	34.162	35.162	0.75225								0	0	0	0.15265	1	12185	12185		12.241	1.4167	1				16248	11215	11778	11867	15894	15894					-0.1009124405387638
GADDESDCES	10	Unmodified	_GADDESDCES_					0	0	0			REV__ENST00000372014.4_1_6:44081832-44095144:-|nuORF	REV__ENST00000372014.4_1_6:44081832-44095144:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	514.2621459960938	2	514.161476	1026.3084	-0.43882	-0.00022562	-0.9298	-0.00047807	-1.3686	-0.00070369	514.6624276188205	81.791	0.15242	81.791	81.707	81.86	0					4	2	2	0	0	0	0.94897	1	29883	29883		0.35063	0	1	909850	+		16249	24055	11779	11868	15895	15895					-0.20370307974053503
GADELKREPD	10	Unmodified	_GADELKREPD_					0	0	0			REV__ENSG00000198173|ENST00000358047|FAM47C	REV__ENSG00000198173|ENST00000358047|FAM47C	MULTI-SECPEP	A375_MHC_IP_R2	2	564.7077026367188	2	565.277835	1128.54112	-0.76577	-0.00043287	3.4667	0.0019597	2.701	0.0015268	565.7814177478721	61.275	0.25219	62.02	61.869	62.121	0.74503					7	4	2	0	0	0	0.87043	1	23197	23197		7.1017	3.5052	1	927860	+		16250	22350	11780	11869	15896	15896					-0.018012581213042722
GADQTTLLY	9	Unmodified	_GADQTTLLY_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	A375_MHC_IP_R2	2	491.6476135253906	2	491.248015	980.481476	-0.47834	-0.00023499	0.27801	0.00013657	-0.20034	-9.8416E-05	491.248053670411	73.417	0.8162	74.152	73.734	74.551	0.73541					33	15	3	0	0	0	0.14922	1	27839	27839		41.84	1.8823	1	4413200			16251	1612	11781	11870	15897	15897					-0.009545290646542526
GADREFIEAR	10	Unmodified	_GADREFIEAR_					0	0	0		ENSG00000106266|ENST00000222990|SNX8	ENSG00000106266|ENST00000222990|SNX8	ENSG00000106266|ENST00000222990|SNX8	MULTI-SECPEP	A375_MHC_IP_R1	1	388.6046447753906	3	388.531638	1162.57309	0.24713	9.6016E-05	-0.25036	-9.7273E-05	-0.0032333	-1.2562E-06	388.53149265241746	33.578	0.60734	33.578	33.291	33.898	0					29	11	3	0	0	0	0.90144	1	11088	11088		8.7518	0	1	5008800			16252	2678	11782	11871	15898	15898					-0.0016984564749691344
GAEADMNFPY	10	Unmodified	_GAEADMNFPY_					0	0	0		tr|U7T6N0|U7T6N0_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00304PE=4SV=1	tr|U7T6N0|U7T6N0_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00304PE=4SV=1	tr|U7T6N0|U7T6N0_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00304PE=4SV=1	MSMS	A375_MHC_IP_R2	2	557.7243041992188	2	557.729132	1113.44371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.13	1	107.88	107.38	108.38	0.75436								0	0	0	0.15308	1	40478	40478		10.824	1.4765	1				16253	30051	11783	11872	15899	15899					-0.10847363321772718
GAEARGDPAWL	11	Unmodified	_GAEARGDPAWL_					0	0	0		ENST00000223459.10_1_16:30582395-30583035:-|nuORF	ENST00000223459.10_1_16:30582395-30583035:-|nuORF	ENST00000223459.10_1_16:30582395-30583035:-|nuORF	MSMS	A375_MHC_IP_R2	2	571.6907348632812	2	571.783087	1141.55162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.618	1	37.389	36.889	37.889	0.7709								0	0	0	0.16197	1	13360	13360		8.4443	0.53415	1				16254	10117	11784	11873	15900	15900					-0.013492306761918371
GAEDDDDDDED	11	Unmodified	_GAEDDDDDDED_					0	0	0		ENST00000552169.1_1_12:107665281-107665620:+|nuORF	ENST00000552169.1_1_12:107665281-107665620:+|nuORF	ENST00000552169.1_1_12:107665281-107665620:+|nuORF	MSMS	A375_MHC_IP_R2	2	605.679931640625	2	605.678741	1209.34293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.638	1	98.394	97.894	98.894	0.75586								0	0	0	0.16334	1	37056	37056		1.3295	0	1				16255	13386	11785	11874	15901	15901					-0.25336813352259924
GAEDFKQQV	9	Unmodified	_GAEDFKQQV_					0	0	0		nc|ENSG00000127511|O75182|SIN3B;ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182-3|SIN3B	nc|ENSG00000127511|O75182|SIN3B	nc|ENSG00000127511|O75182|SIN3B	MSMS	A375_MHC_IP_R2	2	511.17266845703125	2	511.251089	1020.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.823	1	35.586	35.086	36.086	0.76338								0	0	0	0.1521	1	12592	12592		18.135	1.9859	1				16256	4094	11786	11875	15902	15902					-0.021800108331376578
GAEDSNDGCDN	11	Unmodified	_GAEDSNDGCDN_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MSMS	A375_MHC_IP_R2	2	548.6452026367188	2	548.677824	1095.3411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.879	1	57.63	57.13	58.13	0.75015								0	0	0	0.16179	1	21502	21502		9.3831	0	1		+		16257	18241	11787	11876	15903	15903					-0.20276100851197043
GAEEAIAVND	10	Unmodified	_GAEEAIAVND_					0	0	0		nc|ENSG00000136110|O75829-2|CNMD;ENSG00000136110|ENST00000377962|CNMD	nc|ENSG00000136110|O75829-2|CNMD	nc|ENSG00000136110|O75829-2|CNMD	MSMS	A375_MHC_IP_R2	2	494.6767272949219	2	494.732729	987.450904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.858	1	56.608	56.108	57.108	0.75015								0	0	0	0.12316	1	21107	21107		37.974	14.826	1				16258	4752	11788	11877	15904	15904					-0.04332307449715245
GAEEVLGVP	9	Unmodified	_GAEEVLGVP_					0	0	0			REV__ENSG00000177096|ENST00000321753|PHETA2	REV__ENSG00000177096|ENST00000321753|PHETA2	MULTI-SECPEP	A375_MHC_IP_R1	1	870.7401733398438	1	870.456724	869.449448	0.079119	6.8869E-05	1.8843	0.0016402	1.9634	0.0017091	870.4582082262697	126.58	0.30347	126.58	126.46	126.76	0					6	5	2	0	0	0	0.40041	1	48301	48301		23.148	6.2061	1	10034000	+		16259	21437	11789	11878	15905	15905					0.00950103252205281
GAEFVIYQY	9	Unmodified	_GAEFVIYQY_					0	0	0			REV__ENSG00000173406|ENST00000371236|DAB1	REV__ENSG00000173406|ENST00000371236|DAB1	MULTI-SECPEP	A375_MHC_IP_R1	1	545.6659545898438	2	545.266207	1088.51786	-0.63872	-0.00034827	0.18325	9.9918E-05	-0.45547	-0.00024836	545.2663079335033	95.407	0.55525	95.407	95.109	95.665	0					18	10	2	0	0	0	0.65623	1	35066	35066		32.305	5.9642	1	2443100	+		16260	21220	11790	11879	15906	15906					-0.022856521679386788
GAEFVIYQY	9	Unmodified	_GAEFVIYQY_					0	0	0			REV__ENSG00000173406|ENST00000371236|DAB1	REV__ENSG00000173406|ENST00000371236|DAB1	MULTI-MSMS	A375_MHC_IP_R2	2	545.6657104492188	2	545.266207	1088.51786	-0.55596	-0.00030315	-2.3425	-0.0012773	-2.8984	-0.0015804	545.2644604783461	94.66	0.60647	95.404	95.071	95.678	0.74473					19	11	2	0	0	0	0.32899	1	35991	35991		28.487	0.85804	1	2529700	+		16261	21220	11790	11879	15907	15907					-0.022856521679386788
GAEFVIYQY	9	Unmodified	_GAEFVIYQY_					0	0	0			REV__ENSG00000173406|ENST00000371236|DAB1	REV__ENSG00000173406|ENST00000371236|DAB1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	545.266207	1088.51786	-0.55596	-0.00030315	-2.3425	-0.0012773	-2.8984	-0.0015804	545.2644604783461	94.66	0.60647	95.404	95.071	95.678	0.74473	-0.0015448	-0.0026633	NaN	28.487	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2529700	+		16262	21220	11790	11879							-0.022856521679386788
GAEIKHRNTSS	11	Unmodified	_GAEIKHRNTSS_					0	0	0		NCKAP5L|p.V909I|1|0.38|ENSG00000167566|chr12:49795135-49795135|C/T|missense_variant	NCKAP5L|p.V909I|1|0.38|ENSG00000167566|chr12:49795135-49795135|C/T|missense_variant	NCKAP5L|p.V909I|1|0.38|ENSG00000167566|chr12:49795135-49795135|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	599.6851196289062	2	600.31	1198.60545	-0.41349	-0.00024822	3.4124	0.0020485	2.9989	0.0018003	600.3122772830582	34.228	0.20168	34.228	34.052	34.253	0					5	3	2	0	0	0	0.90584	1	11271	11271		12.241	0	1	1115500			16263	14982	11791	11880	15908	15908					0.014089417555169348
GAEINSRRVL	10	Unmodified	_GAEINSRRVL_					0	0	0		ENST00000506930.2_1_5:139884419-139889237:+|nuORF	ENST00000506930.2_1_5:139884419-139889237:+|nuORF	ENST00000506930.2_1_5:139884419-139889237:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	557.1624755859375	2	557.820004	1113.62546	-0.71254	-0.00039747	-2.7653	-0.0015425	-3.4779	-0.00194	557.8165839063909	105.67	0.81579	106.43	105.97	106.78	0.75977					44	15	5	0	0	0	0.87163	1	39863	39863		5.7319	0	1	3917500			16264	12859	11792	11881	15909	15909					0.07318737486116333
GAEKQSRLL	9	Unmodified	_GAEKQSRLL_					0	0	0		ENSG00000101004|ENST00000278886|NINL;ENST00000464285.5_1_20:25434089-25439234:-|nuORF;nc|ENSG00000101004|Q9Y2I6-2|NINL	ENSG00000101004|ENST00000278886|NINL	ENSG00000101004|ENST00000278886|NINL	MULTI-SECPEP	A375_MHC_IP_R2	2	500.6416931152344	2	501.290548	1000.56654	-0.95528	-0.00047887	0.18489	9.2681E-05	-0.77039	-0.00038619	501.2906374240308	38.349	0.6623	39.124	38.739	39.401	0.77451					25	12	3	0	0	0	0.50702	1	14129	14129		19.257	0	1	16014000			16265	2244	11793	11882	15910	15910					0.06628261191815454
GAEPVKRC	8	Unmodified	_GAEPVKRC_					0	0	0		nc|ENSG00000114439|Q8WY36-3|BBX;nc|ENSG00000114439|Q8WY36-2|BBX;ENSG00000114439|ENST00000325805|BBX	nc|ENSG00000114439|Q8WY36-3|BBX	nc|ENSG00000114439|Q8WY36-3|BBX	MULTI-SECPEP	A375_MHC_IP_R2	2	859.1867065429688	1	859.445448	858.438172	-0.60183	-0.00051724	1.036	0.00089041	0.43419	0.00037316	859.4491468679644	126.67	0.25374	126.93	126.8	127.06	0.26593					6	4	2	0	0	0	0.94479	1	49633	49633		4.756	3.1034	1	6033700			16266	3221	11794	11883	15911	15911					0.003290026770628174
GAEQFLESTPP	11	Unmodified	_GAEQFLESTPP_					0	0	0			REV__nc|nan|A6NN90|C2orf81	REV__nc|nan|A6NN90|C2orf81	MULTI-MSMS	A375_MHC_IP_R2	2	393.3094482421875	3	392.524149	1174.55062	-0.83265	-0.00032683	0.13885	5.4502E-05	-0.69379	-0.00027233	392.524163162936	28.73	0.25029	29.429	29.283	29.534	0.69872					7	4	2	0	0	0	0.63737	1	9892	9892		12.228	0.052842	1	14593000	+		16267	23001	11795	11884	15912	15912					-0.029674898357598067
GAESAAFKQLF	11	Unmodified	_GAESAAFKQLF_					0	0	0		ENST00000484717.5_1_3:38035793-38043423:+|nuORF;nc|ENSG00000136059|O15195-2|VILL;ENSG00000136059|ENST00000383759|VILL	ENST00000484717.5_1_3:38035793-38043423:+|nuORF	ENST00000484717.5_1_3:38035793-38043423:+|nuORF	MSMS	A375_MHC_IP_R1	1	584.6829223632812	2	584.803488	1167.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.18	1	109.18	108.68	109.68	0								0	0	0	0.15183	1	40048	40048		19.362	0.10495	1				16268	4748	11796	11885	15913	15913					0.01533110643413238
GAEWRAGGREG	11	Unmodified	_GAEWRAGGREG_					0	0	0		ENSG00000168348|ENST00000307169|INSM2	ENSG00000168348|ENST00000307169|INSM2	ENSG00000168348|ENST00000307169|INSM2	MULTI-SECPEP	A375_MHC_IP_R2	2	381.9154052734375	3	382.519733	1144.53737	-0.46159	-0.00017657	2.9033	0.0011106	2.4417	0.00093399	382.52063553151027	38.366	0.35543	39.14	38.895	39.25	0.77451					10	6	2	0	0	0	0.9574	1	14035	14035		5.5233	0	1	2331100			16269	7291	11797	11886	15914	15914					-0.029118831044797844
GAFADFKQ	8	Unmodified	_GAFADFKQ_					0	0	0		ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;nc|ENSG00000148143|Q96JM2-2|ZNF462;ZNF462|p.D1939E|1|0.3|ENSG00000148143|chr9:106929729-106929729|T/A|missense_variant;ENST00000497489.5_1_9:109691986-109693263:+|nuORF	ENSG00000148143|ENST00000277225|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	MULTI-MSMS	A375_MHC_IP_R1	1	442.14501953125	2	442.21906	882.423567	-0.06434	-2.8452E-05	0.029246	1.2933E-05	-0.035094	-1.5519E-05	442.2191349701155	73.13	0.45653	73.13	72.93	73.386	0					11	8	2	0	0	0	0.7758	1	26570	26570		10.183	0	1	824010			16270	5716	11798	11887	15915	15915					-0.022347461994286277
GAFADFKQ	8	Unmodified	_GAFADFKQ_					0	0	0		ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;nc|ENSG00000148143|Q96JM2-2|ZNF462;ZNF462|p.D1939E|1|0.3|ENSG00000148143|chr9:106929729-106929729|T/A|missense_variant;ENST00000497489.5_1_9:109691986-109693263:+|nuORF	ENSG00000148143|ENST00000277225|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	MULTI-SECPEP	A375_MHC_IP_R2	2	441.6819152832031	2	442.21906	882.423567	-0.50496	-0.0002233	0.12667	5.6014E-05	-0.37829	-0.00016729	442.2191083769515	72.347	0.45634	73.082	72.872	73.328	0.7354					13	8	2	0	0	0	0.93416	1	27497	27497		14.582	1.0738	1	788960			16271	5716	11798	11887	15916	15916					-0.022347461994286277
GAFADFKQ	8	Unmodified	_GAFADFKQ_					0	0	0		ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;nc|ENSG00000148143|Q96JM2-2|ZNF462;ZNF462|p.D1939E|1|0.3|ENSG00000148143|chr9:106929729-106929729|T/A|missense_variant;ENST00000497489.5_1_9:109691986-109693263:+|nuORF	ENSG00000148143|ENST00000277225|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	442.21906	882.423567	-0.06434	-2.8452E-05	0.029246	1.2933E-05	-0.035094	-1.5519E-05	442.2191349701155	73.13	0.45653	73.13	72.93	73.386	0	0.023895	-6.3831E-05	NaN	10.183	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	824010			16272	5716	11798	11887							-0.022347461994286277
GAFAKTSKIDM	11	Unmodified	_GAFAKTSKIDM_					0	0	0		nc|ENSG00000153310|Q9NUQ9-2|CYRIB;ENSG00000153310|ENST00000694912|CYRIB	nc|ENSG00000153310|Q9NUQ9-2|CYRIB	nc|ENSG00000153310|Q9NUQ9-2|CYRIB	MULTI-MSMS	A375_MHC_IP_R2	2	390.1266174316406	3	390.205875	1167.59579	-0.23485	-9.1641E-05	-2.4682	-0.00096311	-2.7031	-0.0010548	390.2046198651587	40.41	0.25367	41.185	40.98	41.234	0.77451					6	4	2	0	0	0	0.72565	1	14899	14899		7.0371	0	1	1245700			16273	6026	11799	11888	15917	15917					0.01870037425760529
GAFGPPSSF	9	Unmodified	_GAFGPPSSF_					0	0	0		ENSG00000179862|ENST00000372638|CITED4	ENSG00000179862|ENST00000372638|CITED4	ENSG00000179862|ENST00000372638|CITED4	MULTI-SECPEP	A375_MHC_IP_R2	2	866.8031616210938	1	866.404295	865.397018	-0.60419	-0.00052348	0.048853	4.2326E-05	-0.55534	-0.00048115	866.4041723003876	82.653	0.35243	83.396	83.246	83.598	0.74293					9	6	2	0	0	0	0.10969	1	31440	31440		67.344	33.241	1	1751700			16274	8254	11800	11889	15918	15918					-0.041064350907618064
GAFGPPSSF	9	Unmodified	_GAFGPPSSF_					0	0	0		ENSG00000179862|ENST00000372638|CITED4	ENSG00000179862|ENST00000372638|CITED4	ENSG00000179862|ENST00000372638|CITED4	MULTI-MATCH	A375_MHC_IP_R1	1		1	866.404295	865.397018	-0.30815	-0.00026698	0.018868	1.6347E-05	-0.28928	-0.00025063	866.4040867685618	83.369	0.35732	83.369	83.226	83.583	0	-0.013507	-1.1722E-05	NaN	48.346	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1119600			16275	8254	11800	11889							-0.041064350907618064
GAFLREYLY	9	Unmodified	_GAFLREYLY_					0	0	0		ENSG00000153339|ENST00000283351|TRAPPC8;nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	ENSG00000153339|ENST00000283351|TRAPPC8	ENSG00000153339|ENST00000283351|TRAPPC8	MULTI-MSMS	A375_MHC_IP_R1	1	566.6950073242188	2	566.295299	1130.57605	-0.29782	-0.00016866	-0.33391	-0.00018909	-0.63173	-0.00035775	566.2951151035795	88.434	0.55985	88.434	88.154	88.714	0					19	10	2	0	0	0	0.45931	1	32423	32423		28.495	28.495	1	7080400			16276	6027	11801	11890	15919	15919					0.015980294773271453
GAFLREYLY	9	Unmodified	_GAFLREYLY_					0	0	0		ENSG00000153339|ENST00000283351|TRAPPC8;nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	ENSG00000153339|ENST00000283351|TRAPPC8	ENSG00000153339|ENST00000283351|TRAPPC8	MULTI-MSMS	A375_MHC_IP_R2	2	566.6953125	2	566.295299	1130.57605	-0.32174	-0.0001822	-0.13423	-7.6016E-05	-0.45597	-0.00025821	566.2953559906906	87.558	0.60544	88.289	87.965	88.57	0.7318					27	11	3	0	0	0	0.45931	1	33280	33280		28.495	14.987	1	6075700			16277	6027	11801	11890	15920	15920					0.015980294773271453
GAFLREYLY	9	Unmodified	_GAFLREYLY_					0	0	0		ENSG00000153339|ENST00000283351|TRAPPC8;nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	ENSG00000153339|ENST00000283351|TRAPPC8	ENSG00000153339|ENST00000283351|TRAPPC8	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	566.295299	1130.57605	-0.29782	-0.00016866	-0.33391	-0.00018909	-0.63173	-0.00035775	566.2951151035795	88.434	0.55985	88.434	88.154	88.714	0	0.072339	-7.7085E-05	NaN	28.495	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7080400			16278	6027	11801	11890							0.015980294773271453
GAFVPPRRW	9	Unmodified	_GAFVPPRRW_					0	0	0		ENST00000320895.9_1_5:1345049-1345133:-|nuORF	ENST00000320895.9_1_5:1345049-1345133:-|nuORF	ENST00000320895.9_1_5:1345049-1345133:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	362.9380187988281	3	362.538287	1084.59303	-0.031586	-1.1451E-05	-0.47296	-0.00017147	-0.50455	-0.00018292	362.5381067932307	44.189	1.8249	44.958	44.076	45.901	0.76909					95	35	4	0	0	0	0.28475	1	16589	16589		29.841	22.739	1	11473000			16279	10694	11802	11891	15921	15921					0.054119948737934465
GAFVWPLASAL	11	Unmodified	_GAFVWPLASAL_					0	0	0			REV__ENST00000459925.1_1_16:67702005-67702500:+|nuORF	REV__ENST00000459925.1_1_16:67702005-67702500:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	566.1558837890625	2	566.313492	1130.61243	-0.34323	-0.00019438	-2.2446	-0.0012712	-2.5879	-0.0014656	566.3111611694657	98.404	0.50677	98.404	98.05	98.557	0					12	9	2	0	0	0	0.98591	1	36068	36068		5.7319	0	1	749380	+		16280	24956	11803	11892	15922	15922					0.05234906374039383
GAFVYFYTQKG	11	Unmodified	_GAFVYFYTQKG_					0	0	0		tr|U7T255|U7T255_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00552PE=4SV=1	tr|U7T255|U7T255_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00552PE=4SV=1	tr|U7T255|U7T255_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00552PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	428.1128845214844	3	427.548518	1279.62372	-0.29291	-0.00012523	-1.0305	-0.00044057	-1.3234	-0.0005658	427.5480630323367	24.422	0.20156	24.422	24.296	24.498	0					5	3	2	0	0	0	0.98994	1	6924	6924		7.4291	1.5609	1	2354500			16281	29919	11804	11893	15923	15923					-0.004903163224980744
GAGAGGSL	8	Unmodified	_GAGAGGSL_					0	0	0		ENST00000324015.7_1_17:1657834-1658029:+|nuORF	ENST00000324015.7_1_17:1657834-1658029:+|nuORF	ENST00000324015.7_1_17:1657834-1658029:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	589.3621826171875	1	589.294016	588.28674	-0.47295	-0.00027871	3.7783	0.0022265	3.3053	0.0019478	589.29723084123	69.423	0.55711	70.157	69.829	70.386	0.73421					14	10	2	0	0	0	0.972	1	26359	26359		5.7604	0	1	1818300			16282	10712	11805	11894	15924	15924					-0.02387235359128681
GAGAGGSL	8	Unmodified	_GAGAGGSL_					0	0	0		ENST00000324015.7_1_17:1657834-1658029:+|nuORF	ENST00000324015.7_1_17:1657834-1658029:+|nuORF	ENST00000324015.7_1_17:1657834-1658029:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	589.294016	588.28674	-0.022434	-1.322E-05	4.0808	0.0024048	4.0584	0.0023916	589.2979077675157	70.252	0.86319	70.252	69.579	70.442	0	0.047107	8.2348E-05	NaN	2.5775	18	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1187000			16283	10712	11805	11894							-0.02387235359128681
GAGARFKAR	9	Unmodified	_GAGARFKAR_					0	0	0			REV__nc|ENSG00000174473|Q49A17-2|GALNTL6	REV__nc|ENSG00000174473|Q49A17-2|GALNTL6	MULTI-SECPEP	A375_MHC_IP_R1	1	467.1453857421875	2	467.272493	932.530432	-0.55837	-0.00026091	-0.97653	-0.00045631	-1.5349	-0.00071722	467.2719398840484	41.7	0.25608	41.7	41.521	41.777	0					6	4	2	0	0	0	0.75466	1	14443	14443		7.9102	0	1	1379500	+		16284	27368	11806	11895	15925	15925					0.06146848805610716
GAGEKRGEV	9	Unmodified	_GAGEKRGEV_					0	0	0			REV__ENST00000256682.8_1_12:49351107-49351233:-|nuORF	REV__ENST00000256682.8_1_12:49351107-49351233:-|nuORF	MSMS	A375_MHC_IP_R2	2	451.671142578125	2	451.738148	901.461744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.656	1	48.417	47.917	48.917	0.76128								0	0	0	0.15411	1	17874	17874		14.838	0.25658	1		+		16285	23152	11807	11896	15926	15926					0.007071397152344616
GAGGALFVH	9	Unmodified	_GAGGALFVH_					0	0	0		ENSG00000178127|ENST00000318388|NDUFV2	ENSG00000178127|ENST00000318388|NDUFV2	ENSG00000178127|ENST00000318388|NDUFV2	MULTI-SECPEP	A375_MHC_IP_R1	1	415.1217956542969	2	414.72177	827.428987	0.31634	0.00013119	-0.20399	-8.4601E-05	0.11235	4.6593E-05	414.7216393189661	46.37	0.50241	46.37	46.043	46.545	0					15	9	2	0	0	0	0.0515	1	16249	16249		79.935	43.468	1	3100100			16286	8137	11808	11897	15927	15927					0.008369773830395388
GAGGALFVH	9	Unmodified	_GAGGALFVH_					0	0	0		ENSG00000178127|ENST00000318388|NDUFV2	ENSG00000178127|ENST00000318388|NDUFV2	ENSG00000178127|ENST00000318388|NDUFV2	MULTI-SECPEP	A375_MHC_IP_R2	2	415.1217346191406	2	414.72177	827.428987	-0.040305	-1.6715E-05	0.11322	4.6956E-05	0.072919	3.0241E-05	414.7217323316139	45.4	0.45504	46.165	45.997	46.453	0.76519					15	8	2	0	0	0	0.0515	1	16981	16981		79.935	43.468	1	3246900			16287	8137	11808	11897	15928	15928					0.008369773830395388
GAGGALFVHRD	11	Unmodified	_GAGGALFVHRD_					0	0	0		ENSG00000178127|ENST00000318388|NDUFV2	ENSG00000178127|ENST00000318388|NDUFV2	ENSG00000178127|ENST00000318388|NDUFV2	MULTI-SECPEP	A375_MHC_IP_R1	1	367.5928649902344	3	367.192957	1098.55704	0.10532	3.8673E-05	-0.45244	-0.00016613	-0.34712	-0.00012746	367.19297594647253	31.03	0.50611	31.03	30.857	31.363	0					24	9	4	0	0	0	0.90652	1	9931	9931		12.35	7.3028	1	4060500			16288	8137	11809	11898	15929	15929					0.011704929062716474
GAGGALFVHRD	11	Unmodified	_GAGGALFVHRD_					0	0	0		ENSG00000178127|ENST00000318388|NDUFV2	ENSG00000178127|ENST00000318388|NDUFV2	ENSG00000178127|ENST00000318388|NDUFV2	MULTI-SECPEP	A375_MHC_IP_R2	2	367.59307861328125	3	367.192957	1098.55704	0.10599	3.892E-05	0.098871	3.6305E-05	0.20486	7.5224E-05	367.19295102898514	30.303	0.55787	31.022	30.809	31.367	0.71857					18	10	2	0	0	0	0.90652	1	10649	10649		16.137	8.6601	1	2452000			16289	8137	11809	11898	15930	15930					0.011704929062716474
GAGGGAGGH	9	Unmodified	_GAGGGAGGH_					0	0	0			REV__ENSG00000185085|ENST00000330574|INTS5	REV__ENSG00000185085|ENST00000330574|INTS5	MULTI-SECPEP	A375_MHC_IP_R1	1	640.9894409179688	1	640.279763	639.272486	-0.74211	-0.00047516	-3.5384	-0.0022656	-4.2805	-0.0027407	640.2728641334267	80.825	0.40717	80.825	80.642	81.049	0					10	7	2	0	0	0	0.81122	1	29487	29487		0	0	1	728230	+		16290	21866	11810	11899	15931	15931					-0.061578877874353566
GAGGGGKG	8	Unmodified	_GAGGGGKG_					0	0	0			REV__ENST00000334454.10_1_14:23502854-23503715:-|nuORF	REV__ENST00000334454.10_1_14:23502854-23503715:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	561.20263671875	1	560.2787	559.271424	-0.60419	-0.00033851	3.2911	0.0018439	2.6869	0.0015054	560.279423321984	67.649	0.40685	68.385	68.155	68.562	0.73631					10	7	2	0	0	0	0.7779	1	25634	25634		2.5775	0	1	549890	+		16291	23656	11811	11900	15932	15932					-0.025841021563337563
GAGLVIVVG	9	Unmodified	_GAGLVIVVG_					0	0	0			REV__ENSG00000188641|ENST00000370192|DPYD	REV__ENSG00000188641|ENST00000370192|DPYD	MULTI-SECPEP	A375_MHC_IP_R2	2	784.8921508789062	1	784.492716	783.485439	-0.96156	-0.00075434	0.27978	0.00021949	-0.68178	-0.00053485	784.4928325211358	103.44	0.60892	104.2	103.94	104.55	0.76428					18	11	2	0	0	0	0.53495	1	39275	39275		20.871	0	1	5811200	+		16292	22104	11812	11901	15933	15933					0.08503605219721067
GAGLVVASGV	10	Unmodified	_GAGLVVASGV_					0	0	0		nc|ENSG00000117153|Q53G59-2|KLHL12;ENSG00000117153|ENST00000367261|KLHL12;ENST00000426448.1_1_22:20805532-20806108:+|nuORF	nc|ENSG00000117153|Q53G59-2|KLHL12	nc|ENSG00000117153|Q53G59-2|KLHL12	MULTI-SECPEP	A375_MHC_IP_R2	2	415.1217346191406	2	415.242535	828.470518	-0.038946	-1.6172E-05	0.27405	0.0001138	0.23511	9.7626E-05	415.2424416239536	45.462	0.25238	46.227	46.15	46.403	0.76519					7	4	2	0	0	0	0.62479	1	16981	16981		21.747	5.8995	1	1049000			16293	3461	11813	11902	15934	15934					0.049421133517171256
GAGPPLAAL	9	Unmodified	_GAGPPLAAL_					0	0	0			REV__ENST00000345003.8_1_3:148709345-148709390:+|nuORF	REV__ENST00000345003.8_1_3:148709345-148709390:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	766.1746826171875	1	766.445766	765.438489	-1.1818	-0.0009058	-0.043019	-3.2972E-05	-1.2248	-0.00093877	766.4456227264321	71.975	0.65725	72.709	72.364	73.021	0.73421					21	12	2	0	0	0	0.53495	1	27209	27209		20.871	0	1	3777600	+		16294	23766	11814	11903	15935	15935					0.04638745668546562
GAGPPLAAL	9	Unmodified	_GAGPPLAAL_					0	0	0			REV__ENST00000345003.8_1_3:148709345-148709390:+|nuORF	REV__ENST00000345003.8_1_3:148709345-148709390:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	766.445766	765.438489	-0.39248	-0.00030081	1.3671	0.0010478	0.97467	0.00074703	766.4457328825172	72.831	0.659	72.831	72.423	73.082	0	0.061322	0.00098688	NaN	20.871	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4100400	+		16295	23766	11814	11903							0.04638745668546562
GAGSGGAK	8	Unmodified	_GAGSGGAK_					0	0	0		ENSG00000137273|ENST00000645481|FOXF2	ENSG00000137273|ENST00000645481|FOXF2	ENSG00000137273|ENST00000645481|FOXF2	MULTI-SECPEP	A375_MHC_IP_R1	1	603.744140625	1	604.304915	603.297639	-0.65814	-0.00039772	-1.7451	-0.0010546	-2.4033	-0.0014523	604.3044453315484	67.256	0.30787	67.256	67.091	67.399	0					7	5	2	0	0	0	0.972	1	24314	24314		2.5775	0	1	573130			16296	4874	11815	11904	15936	15936					-0.019878329848666
GAGVTQEVAAY	11	Unmodified	_GAGVTQEVAAY_					0	0	0		ENST00000434752.3_1_5:138727297-138727579:-|nuORF	ENST00000434752.3_1_5:138727297-138727579:-|nuORF	ENST00000434752.3_1_5:138727297-138727579:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	533.6634521484375	2	533.264196	1064.51384	-0.82205	-0.00043837	-0.16983	-9.0564E-05	-0.99188	-0.00052893	533.2641635133716	55.534	0.91518	56.285	55.933	56.848	0.75075					53	17	6	0	0	0	0.67565	1	20917	20917		17.443	0.50035	1	24139000			16297	11902	11816	11905	15937	15937					-0.015837416616705013
GAGVVPLGGSV	11	Unmodified	_GAGVVPLGGSV_					0	0	0			REV__ENST00000301073.3_1_19:56114321-56114453:+|nuORF	REV__ENST00000301073.3_1_19:56114321-56114453:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	456.6870422363281	2	456.761092	911.507631	-0.54954	-0.00025101	-0.11063	-5.0532E-05	-0.66017	-0.00030154	456.76105610204803	61.803	0.65694	62.546	62.319	62.976	0.74263					20	12	2	0	0	0	0.72949	1	23353	23353		9.3831	0	1	1709200	+		16298	23422	11817	11906	15938	15938					0.04833784897482474
GAGWTPWRPSC	11	Unmodified	_GAGWTPWRPSC_					0	0	0			REV__ENST00000471359.1_1_20:25274588-25274768:+|nuORF	REV__ENST00000471359.1_1_20:25274588-25274768:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	406.6152038574219	3	406.522197	1216.54476	-0.31553	-0.00012827	-1.7181	-0.00069846	-2.0337	-0.00082673	406.85676448043944	20.689	0.86193	21.299	20.855	21.717	0.61029					32	16	3	0	0	0	0.99732	1	6304	6304		2.2527	0.32522	1	1450500	+		16299	25118	11818	11907	15939	15939					-0.05484866828419399
GAHGCRIPDR	10	Unmodified	_GAHGCRIPDR_					0	0	0		ENST00000476479.1_1_7:55479080-55499010:+|nuORF;ENST00000452107.6_1_7:55447520-55499010:+|nuORF;ENSG00000132434|ENST00000254770|LANCL2;ENST00000466041.1_1_7:55495935-55499010:+|nuORF	ENST00000476479.1_1_7:55479080-55499010:+|nuORF	ENST00000476479.1_1_7:55479080-55499010:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	360.93634033203125	3	361.182175	1080.5247	-0.50248	-0.00018149	-0.62454	-0.00022557	-1.127	-0.00040706	361.1819889522826	19.748	0.45415	20.358	20.146	20.6	0.61029					11	8	2	0	0	0	0.91556	1	6034	6034		3.3196	0	1	867970			16300	4408	11819	11908	15940	15940					-0.0123461776838667
GAHGPVAL	8	Unmodified	_GAHGPVAL_					0	0	0		ENST00000329565.5_1_16:11770383-11770509:+|nuORF	ENST00000329565.5_1_16:11770383-11770509:+|nuORF	ENST00000329565.5_1_16:11770383-11770509:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	360.6131286621094	2	361.203213	720.391873	0.28389	0.00010254	-0.37012	-0.00013369	-0.086235	-3.1148E-05	361.20299135623515	43.365	0.50946	43.365	43.043	43.553	0					11	9	2	0	0	0	0.972	1	15066	15066		6.3541	0	1	1127300			16301	10756	11820	11909	15941	15941					0.020493058372608175
GAHLPPPQLW	10	Unmodified	_GAHLPPPQLW_					0	0	0		ENST00000480424.6_1_16:630268-633631:+|nuORF;nc|ENSG00000007541|Q9BRB3|PIGQ	ENST00000480424.6_1_16:630268-633631:+|nuORF	ENST00000480424.6_1_16:630268-633631:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	557.6695556640625	2	558.303458	1114.59236	-0.35417	-0.00019773	-2.6598	-0.001485	-3.014	-0.0016827	558.3016441732635	47.765	0.40243	47.765	47.618	48.02	0					17	7	3	0	0	0	0.75488	1	16857	16857		15.847	0	1	2098300			16302	12497	11821	11910	15942	15942					0.03965155434070766
GAHLRPPEPV	10	Unmodified	_GAHLRPPEPV_					0	0	0		ENST00000314222.4_1_11:2949785-2950526:-|nuORF	ENST00000314222.4_1_11:2949785-2950526:-|nuORF	ENST00000314222.4_1_11:2949785-2950526:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	358.919921875	3	358.201452	1071.58253	-0.55621	-0.00019923	-0.01092	-3.9117E-06	-0.56713	-0.00020315	358.20145230572894	22.862	0.45902	23.492	23.164	23.623	0.63014					16	8	3	0	0	0	0.70615	1	7208	7208		9.544	0	1	8354900			16303	10649	11822	11911	15943	15943					0.049599674286810114
GAHPSEDNDFY	11	Unmodified	_GAHPSEDNDFY_					0	0	0		ENSG00000175489|ENST00000339007|LRRC25	ENSG00000175489|ENST00000339007|LRRC25	ENSG00000175489|ENST00000339007|LRRC25	MULTI-MSMS	A375_MHC_IP_R2	2	626.16943359375	2	626.249274	1250.484	-1.0564	-0.0006616	1.2857	0.00080518	0.22928	0.00014359	626.2500762244433	41.045	0.55872	41.819	41.54	42.098	0.77451					18	10	2	0	0	0	0.73078	1	15237	15237		8.1555	8.1555	1	2321300			16304	7965	11823	11912	15944	15944					-0.13122725397647628
GAHPVIGF	8	Unmodified	_GAHPVIGF_					0	0	0			REV__ENST00000462803.5_1_9:82286241-82340056:+|nuORF	REV__ENST00000462803.5_1_9:82286241-82340056:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	399.61871337890625	2	399.218863	796.423173	-0.24404	-9.7424E-05	0.27283	0.00010892	0.028797	1.1496E-05	399.21883872957943	60.863	0.55973	60.863	60.566	61.126	0					19	10	2	0	0	0	0.77781	1	21920	21920		2.8892	0	1	2381500	+		16305	17469	11824	11913	15945	15945					0.016818788713862887
GAIEDTFQI	9	Unmodified	_GAIEDTFQI_					0	0	0			REV__ENSG00000112706|ENST00000369950|IMPG1	REV__ENSG00000112706|ENST00000369950|IMPG1	MSMS	A375_MHC_IP_R1	1	497.1916198730469	2	497.248015	992.481476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.488	1	74.488	73.988	74.988	0								0	0	0	0.089973	1	27131	27131		44.407	18.066	1		+		16306	17750	11825	11914	15946	15946					-0.015065290646703033
GAIFIQQSL	9	Unmodified	_GAIFIQQSL_					0	0	0		nc|ENSG00000158865|Q8WWX8-5|SLC5A11;nc|ENSG00000158865|Q8WWX8-2|SLC5A11;ENSG00000158865|ENST00000424767|SLC5A11;nc|ENSG00000158865|Q8WWX8-4|SLC5A11;nc|ENSG00000158865|Q8WWX8-3|SLC5A11;nc|ENSG00000158865|Q8WWX8-6|SLC5A11	nc|ENSG00000158865|Q8WWX8-5|SLC5A11	nc|ENSG00000158865|Q8WWX8-5|SLC5A11	MULTI-SECPEP	A375_MHC_IP_R2	2	975.8632202148438	1	976.546208	975.538931	0.04725	4.6142E-05	-0.23994	-0.00023431	-0.19269	-0.00018817	976.5456858887601	87.933	0.40683	88.665	88.468	88.875	0.7318					11	7	2	0	0	0	0.52144	1	33500	33500		23.148	1.4018	1	2570600			16307	6338	11826	11915	15947	15947					0.05018357931567152
GAIGPPLPAA	10	Unmodified	_GAIGPPLPAA_					0	0	0		ENST00000533524.5_1_11:57193786-57194582:-|nuORF;ENST00000530005.5_3_11:57193786-57194505:-|nuORF	ENST00000533524.5_1_11:57193786-57194582:-|nuORF	ENST00000533524.5_1_11:57193786-57194582:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	863.8981323242188	1	863.498529	862.491253	-0.36039	-0.0003112	-0.36646	-0.00031644	-0.72685	-0.00062763	863.4984592734335	76.345	0.70667	76.345	76.017	76.724	0					27	13	3	0	0	0	0.53681	1	27886	27886		40.449	2.2974	1	6097300			16308	13143	11827	11916	15948	15948					0.054507037313555884
GAIGPPLPAA	10	Unmodified	_GAIGPPLPAA_					0	0	0		ENST00000533524.5_1_11:57193786-57194582:-|nuORF;ENST00000530005.5_3_11:57193786-57194505:-|nuORF	ENST00000533524.5_1_11:57193786-57194582:-|nuORF	ENST00000533524.5_1_11:57193786-57194582:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	863.898681640625	1	863.498529	862.491253	-0.61891	-0.00053442	0.10807	9.3321E-05	-0.51083	-0.0004411	863.4985115793122	75.516	0.61366	76.256	75.976	76.589	0.74052					20	11	2	0	0	0	0.2945	1	28653	28653		40.449	2.2974	1	6143500			16309	13143	11827	11916	15949	15949					0.054507037313555884
GAIILAKL	8	Unmodified	_GAIILAKL_					0	0	0		ENST00000533161.5_1_16:2012676-2014626:-|nuORF;ENSG00000140988|ENST00000343262|RPS2;ENST00000527871.5_1_16:2012676-2013018:-|nuORF;ENST00000479476.1_1_18:68097766-68098228:+|nuORF;ENST00000494359.1_1_11:17250107-17250695:+|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF	ENST00000533161.5_1_16:2012676-2014626:-|nuORF	ENST00000533161.5_1_16:2012676-2014626:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	400.1759948730469	2	399.776014	797.537475	-0.32962	-0.00013177	0.53474	0.00021378	0.20512	8.2002E-05	399.77614117306206	76.853	0.61252	76.853	76.622	77.235	0					17	11	2	0	0	0	0.38164	1	28038	28038		46.921	22.247	1	2303400			16310	5202	11828	11917	15950	15950					0.13060768633476982
GAIKFGKYAF	10	Unmodified	_GAIKFGKYAF_					0	0	0			REV__tr|U7SUS0|U7SUS0_FUSNUDUF3592domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00982PE=4SV=1	REV__tr|U7SUS0|U7SUS0_FUSNUDUF3592domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00982PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	367.6076354980469	3	367.874565	1100.60187	-0.013553	-4.9857E-06	0.92824	0.00034147	0.91468	0.00033649	368.21050990890456	38.214	1.1732	38.214	37.658	38.832	0					33	22	2	0	0	0	0.90853	1	12894	12894		6.1918	0	1	5573700	+		16311	28568	11829	11918	15951	15951					0.05558923719604536
GAITRLWDSI	10	Unmodified	_GAITRLWDSI_					0	0	0			REV__nc|ENSG00000157680|O75912|DGKI	REV__nc|ENSG00000157680|O75912|DGKI	MULTI-SECPEP	A375_MHC_IP_R2	2	566.2091064453125	2	566.31148	1130.60841	-0.3137	-0.00017765	-0.77291	-0.00043771	-1.0866	-0.00061536	566.3111889601353	93.299	0.55897	94.038	93.646	94.205	0.73902					16	10	2	0	0	0	0.85074	1	35471	35471		11.495	0	1	1076500	+		16312	27309	11830	11919	15952	15952					0.04832816880343671
GAKDLVCTGDH	11	Unmodified	_GAKDLVCTGDH_					0	0	0			REV__ENSG00000149090|ENST00000619888|PAMR1	REV__ENSG00000149090|ENST00000619888|PAMR1	MULTI-SECPEP	A375_MHC_IP_R1	1	558.174072265625	2	558.26113	1114.50771	-0.3046	-0.00017005	-2.2468	-0.0012543	-2.5514	-0.0014244	558.2597085401333	35.687	0.46034	35.687	35.472	35.932	0					11	8	2	0	0	0	0.9889	1	11964	11964		8.1555	0	1	1646500	+		16313	19659	11831	11920	15953	15953					-0.04496583164859658
GAKFTIIDSL	10	Unmodified	_GAKFTIIDSL_					0	0	0		ENSG00000139044|ENST00000266383|B4GALNT3	ENSG00000139044|ENST00000266383|B4GALNT3	ENSG00000139044|ENST00000266383|B4GALNT3	MULTI-SECPEP	A375_MHC_IP_R2	2	532.1857299804688	2	532.802957	1063.59136	-0.71893	-0.00038305	0.26436	0.00014085	-0.45457	-0.0002422	532.8027928537581	64.827	0.96584	65.565	64.952	65.918	0.73812					33	18	3	0	0	0	0.81668	1	24453	24453		19.362	10.769	1	6428400			16314	5046	11832	11921	15954	15954					0.0621089627454694
GAKGKGGG	8	Unmodified	_GAKGKGGG_					0	0	0		ENST00000569326.2_1_8:145724500-145725055:-|nuORF	ENST00000569326.2_1_8:145724500-145725055:-|nuORF	ENST00000569326.2_1_8:145724500-145725055:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	632.4140014648438	1	631.3522	630.344923	-0.70913	-0.00044771	1.7168	0.0010839	1.0076	0.00063617	631.3528717395591	90.03	1.4265	90.762	90.085	91.511	0.7318					35	27	2	0	0	0	0.77842	1	34288	34288		0.69038	0.088878	1	3827900			16315	13591	11833	11922	15955	15955					0.014964462861485117
GAKKKKKKKK	10	Unmodified	_GAKKKKKKKK_					0	0	0		ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	MSMS	A375_MHC_IP_R1	1	391.2916564941406	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.606	1	28.606	28.106	29.106	0								0	0	0	0.15637	1	8848	8848		0.13989	0.13989	1				16316	11606	11834	11923	15956	15956					0.25026506998392506
GAKKKKKKKK	10	Unmodified	_GAKKKKKKKK_					0	0	0		ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	MSMS	A375_MHC_IP_R1	1	391.29669189453125	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.494	1	63.494	62.994	63.994	0								0	0	0	0.15637	1	22952	22952		0.15932	0.15932	1				16317	11606	11834	11923	15957	15957					0.25026506998392506
GAKKKKKKKK	10	Unmodified	_GAKKKKKKKK_					0	0	0		ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	MSMS	A375_MHC_IP_R2	2	391.2961730957031	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.356	1	63.099	62.599	63.599	0.74263								0	0	0	0.15618	1	23636	23636		0.77653	0.77653	1				16318	11606	11834	11923	15958	15958					0.25026506998392506
GAKKVFYVIE	10	Unmodified	_GAKKVFYVIE_					0	0	0		ENSG00000164690|ENST00000297261|SHH	ENSG00000164690|ENST00000297261|SHH	ENSG00000164690|ENST00000297261|SHH	MSMS	A375_MHC_IP_R2	2	385.2924499511719	3	385.225375	1152.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.738	1	25.382	24.882	25.882	0.64368								0	0	0	0.15267	1	8176	8176		12.175	1.2758	1				16319	6866	11835	11924	15959	15959					0.08407462062564264
GAKLIFHSRL	10	Unmodified	_GAKLIFHSRL_					0	0	0			REV__ENST00000368518.5_1_1:154185058-154186371:-|nuORF	REV__ENST00000368518.5_1_1:154185058-154186371:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	381.6336364746094	3	381.232864	1140.67676	-0.0010176	-3.8794E-07	-0.48728	-0.00018577	-0.48829	-0.00018615	381.5677347442369	29.993	1.2505	29.993	29.607	30.857	0					41	24	2	0	0	0	0.70312	1	9345	9345		10.899	6.0019	1	13534000	+		16320	23996	11836	11925	15960	15960					0.11205106250849894
GAKLPVKW	8	Unmodified	_GAKLPVKW_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-MSMS	A375_MHC_IP_R1	1	450.1791076660156	2	449.779088	897.543623	0.33857	0.00015228	0.13702	6.163E-05	0.47559	0.00021391	449.7790534644285	44.651	0.50824	44.651	44.42	44.928	0					15	9	2	0	0	0	0.70783	1	15617	15617		32.305	10.559	1	3073400			16321	2654	11837	11926	15961	15961					0.09075286864981535
GAKLPVKW	8	Unmodified	_GAKLPVKW_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-MATCH	A375_MHC_IP_R2	2		2	449.779088	897.543623	-0.10814	-4.8641E-05	-0.13323	-5.9924E-05	-0.24137	-0.00010856	449.77898693704867	43.667	0.4538	44.437	44.278	44.732	0.76909	-0.10729	-8.8133E-05	NaN	32.305	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1684400			16322	2654	11837	11926							0.09075286864981535
GAKLTCDIFK	10	Unmodified	_GAKLTCDIFK_					0	0	0			REV__nc|ENSG00000239474|O60662-2|KLHL41	REV__nc|ENSG00000239474|O60662-2|KLHL41	MULTI-SECPEP	A375_MHC_IP_R2	2	366.26708984375	3	365.867082	1094.57942	-0.46134	-0.00016879	0.48282	0.00017665	0.021485	7.8606E-06	365.8672499591111	33.723	0.60678	34.475	34.196	34.803	0.75225					34	11	4	0	0	0	0.8125	1	12125	12125		5.0475	0	1	16236000	+		16323	22770	11838	11927	15962	15962					0.03590956259677114
GAKNSQIKQW	10	Unmodified	_GAKNSQIKQW_					0	0	0		ENST00000431180.5_1_3:47125256-47125295:-|nuORF	ENST00000431180.5_1_3:47125256-47125295:-|nuORF	ENST00000431180.5_1_3:47125256-47125295:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	579.6402587890625	2	580.314554	1158.61456	-0.52385	-0.000304	-0.61314	-0.00035581	-1.137	-0.00065981	580.3140821314271	38.02	0.15588	38.794	38.687	38.843	0.77451					4	2	2	0	0	0	0.87163	1	13963	13963		19.257	9.1831	1	800450			16324	11866	11839	11928	15963	15963					0.04159335111830842
GAKPPALK	8	Unmodified	_GAKPPALK_					0	0	0			REV__ENSG00000067798|ENST00000397909|NAV3	REV__ENSG00000067798|ENST00000397909|NAV3	MULTI-SECPEP	A375_MHC_IP_R2	2	391.9400329589844	2	391.250163	780.485774	-0.21008	-8.2195E-05	0.34002	0.00013303	0.12993	5.0836E-05	391.2501980148916	27.799	0.50659	28.477	28.301	28.808	0.67857					23	9	3	0	0	0	0.972	1	9527	9527		2.3027	1.5091	1	16532000	+		16325	16534	11840	11929	15964	15964					0.08675024939554987
GAKQNRIHLL	10	Unmodified	_GAKQNRIHLL_					0	0	0			REV__ENST00000309955.7_1_2:202028647-202028731:+|nuORF	REV__ENST00000309955.7_1_2:202028647-202028731:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	383.94390869140625	3	383.899885	1148.67783	-0.53892	-0.00020689	0.088552	3.3995E-05	-0.45037	-0.0001729	383.89989975854	25.057	0.66187	25.701	25.516	26.178	0.64368					27	12	3	0	0	0	0.71266	1	8487	8487		6.6304	1.3335	1	8086800	+		16326	23492	11841	11930	15965	15965					0.10943320619753649
GAKRHSGL	8	Unmodified	_GAKRHSGL_					0	0	0			REV__nc|ENSG00000080823|Q9UQ07-5|MOK	REV__nc|ENSG00000080823|Q9UQ07-5|MOK	MULTI-MSMS	A375_MHC_IP_R1	1	413.638671875	2	413.238119	824.461684	0.13474	5.5681E-05	0.41495	0.00017147	0.54969	0.00022715	413.2382569708292	94.896	1.317	94.896	94.651	95.968	0					38	25	2	0	0	0	0.77603	1	35134	35134		9.3474	0	1	1604300	+		16327	16758	11842	11931	15966	15966					0.04243184505912723
GAKRHSGL	8	Unmodified	_GAKRHSGL_					0	0	0			REV__nc|ENSG00000080823|Q9UQ07-5|MOK	REV__nc|ENSG00000080823|Q9UQ07-5|MOK	MULTI-MSMS	A375_MHC_IP_R2	2	413.6382141113281	2	413.238119	824.461684	0.080895	3.3429E-05	0.037585	1.5532E-05	0.11848	4.8961E-05	413.2380504480282	101.27	2.9545	102.04	101.39	104.35	0.76428					135	57	3	0	0	0	0.77717	1	38833	38833		5.2307	0	1	9805800	+		16328	16758	11842	11931	15967	15967					0.04243184505912723
GAKRRTDR	8	Unmodified	_GAKRRTDR_					0	0	0			REV__nc|ENSG00000171533|Q96JE9-2|MAP6	REV__nc|ENSG00000171533|Q96JE9-2|MAP6	MSMS	A375_MHC_IP_R1	1	480.4451904296875	2	480.278306	958.54206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.209	1	24.209	23.709	24.709	0								0	0	0	0.16876	1	6816	6816		5.7604	0	1		+		16329	21075	11843	11932	15968	15968					0.061130458289426315
GAKRWIFWLWW	11	Unmodified	_GAKRWIFWLWW_					0	0	0		SLC6A14|p.I586Ffs*12|1|0.13|ENSG00000268104|chrX:116457749-116457749|A/-|frameshift_variant;ENSG00000268104|ENST00000598581|SLC6A14	SLC6A14|p.I586Ffs*12|1|0.13|ENSG00000268104|chrX:116457749-116457749|A/-|frameshift_variant	SLC6A14|p.I586Ffs*12|1|0.13|ENSG00000268104|chrX:116457749-116457749|A/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	774.9157104492188	2	774.916781	1547.81901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.65	1	88.382	87.882	88.882	0.7318								0	0	0	0.16353	1	33340	33340		0.35063	0	1				16330	9971	11844	11933	15969	15969					0.06701318993032146
GALAGVVGV	9	Unmodified	_GALAGVVGV_					0	0	0		nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MULTI-SECPEP	A375_MHC_IP_R1	1	742.1270141601562	1	742.445766	741.438489	-0.4608	-0.00034212	-0.12321	-9.1476E-05	-0.58401	-0.00043359	742.4455826706007	82.999	0.60502	82.999	82.672	83.277	0					22	11	3	0	0	0	0.090069	1	30388	30388		56.048	10.298	1	8863200			16331	2270	11845	11934	15970	15970					0.05742745668578664
GALAGVVGV	9	Unmodified	_GALAGVVGV_					0	0	0		nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MULTI-MATCH	A375_MHC_IP_R2	2		1	742.445766	741.438489	-0.89434	-0.000664	0.65137	0.0004836	-0.24297	-0.00018039	742.4461727678336	82.07	0.61093	82.813	82.533	83.144	0.74293	-0.093059	0.00042217	NaN	56.048	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9835000			16332	2270	11845	11934							0.05742745668578664
GALDGSNLFY	10	Unmodified	_GALDGSNLFY_					0	0	0			REV__nc|ENSG00000146463|Q5VZL5-2|ZMYM4	REV__nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-MSMS	A375_MHC_IP_R2	2	528.7317504882812	2	528.753464	1055.49238	-0.44012	-0.00023272	-0.56252	-0.00029743	-1.0026	-0.00053015	528.7530816885262	68.916	0.86075	69.651	69.272	70.133	0.73511					40	16	4	0	0	0	0.58828	1	26217	26217		21.747	1.293	1	12987000	+		16333	19539	11846	11935	15971	15971					-0.03315126690381476
GALDKETQDQY	11	Unmodified	_GALDKETQDQY_					0	0	0		PCDH20|p.R280K|1|0.43|ENSG00000280165|chr13:61413260-61413260|C/T|missense_variant	PCDH20|p.R280K|1|0.43|ENSG00000280165|chr13:61413260-61413260|C/T|missense_variant	PCDH20|p.R280K|1|0.43|ENSG00000280165|chr13:61413260-61413260|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	423.2521057128906	3	423.198213	1266.57281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.222	1	44.991	44.491	45.491	0.7691								0	0	0	0.1623	1	16502	16502		5.4027	2.5594	1				16334	15121	11847	11936	15972	15972					-0.049813101579729846
GALDKSEEEF	10	Unmodified	_GALDKSEEEF_					0	0	0			REV__GOLGA6A|p.A292Sfs*12|1|0.09|ENSG00000159289|chr15:74074976-74074977|-/G|frameshift_variant	REV__GOLGA6A|p.A292Sfs*12|1|0.09|ENSG00000159289|chr15:74074976-74074977|-/G|frameshift_variant	MSMS	A375_MHC_IP_R2	2	562.6848754882812	2	562.758943	1123.50333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.874	1	49.631	49.131	50.131	0.75737								0	0	0	0.14925	1	18355	18355		19.257	3.4098	1		+		16335	19216	11848	11937	15973	15973					-0.05347769106742817
GALDLYLIAH	10	Unmodified	_GALDLYLIAH_					0	0	0			REV__ENST00000418987.2_1_9:103493819-103494230:+|nuORF	REV__ENST00000418987.2_1_9:103493819-103494230:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	362.9382629394531	3	362.537842	1084.5917	0.62434	0.00022635	0.56168	0.00020363	1.186	0.00042997	362.5380232195983	44.988	1.7741	44.988	44.37	46.144	0					104	34	4	0	0	0	0.91556	1	15832	15832		8.9762	5.3892	1	10700000	+		16336	24563	11849	11938	15974	15974					0.05278315994382865
GALDVIRNF	9	Unmodified	_GALDVIRNF_					0	0	0		ENSG00000116747|ENST00000400968|RO60	ENSG00000116747|ENST00000400968|RO60	ENSG00000116747|ENST00000400968|RO60	MULTI-SECPEP	A375_MHC_IP_R1	1	503.179931640625	2	502.779816	1003.54508	-0.28149	-0.00014153	0.40909	0.00020568	0.12759	6.4152E-05	502.779906113209	97.263	0.45467	97.263	96.985	97.44	0					15	8	2	0	0	0	0.14606	1	35730	35730		55.503	37.356	1	2527300			16337	3426	11850	11939	15975	15975					0.04344876163099798
GALDVIRNF	9	Unmodified	_GALDVIRNF_					0	0	0		ENSG00000116747|ENST00000400968|RO60	ENSG00000116747|ENST00000400968|RO60	ENSG00000116747|ENST00000400968|RO60	MULTI-SECPEP	A375_MHC_IP_R2	2	503.17950439453125	2	502.779816	1003.54508	-0.68272	-0.00034326	0.16178	8.1338E-05	-0.52094	-0.00026192	502.77986136556416	96.373	0.50747	97.123	96.855	97.363	0.75044					13	9	2	0	0	0	0.14572	1	36604	36604		62.573	32.348	1	1949100			16338	3426	11850	11939	15976	15976					0.04344876163099798
GALEEQAEQL	10	Unmodified	_GALEEQAEQL_					0	0	0			REV__ENSG00000106665|ENST00000223398|CLIP2	REV__ENSG00000106665|ENST00000223398|CLIP2	MSMS	A375_MHC_IP_R1	1	544.187744140625	2	544.266936	1086.51932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.869	1	94.869	94.369	95.369	0								0	0	0	0.13854	1	34869	34869		30.637	7.4881	1		+		16339	17460	11851	11940	15977	15977					-0.020480628698578585
GALFVVLILLW	11	Unmodified	_GALFVVLILLW_					0	0	0		MXRA5|p.S11F|1|0.44|ENSG00000101825|chrX:3343802-3343802|G/A|missense_variant	MXRA5|p.S11F|1|0.44|ENSG00000101825|chrX:3343802-3343802|G/A|missense_variant	MXRA5|p.S11F|1|0.44|ENSG00000101825|chrX:3343802-3343802|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	622.4086303710938	2	622.394285	1242.77402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.693	1	90.425	89.925	90.925	0.7318								0	0	0	0.1623	1	34129	34129		6.7232	2.7788	1				16340	14426	11852	11941	15978	15978					0.16234075407123782
GALGGFLFKV	10	Unmodified	_GALGGFLFKV_					0	0	0			REV__ENST00000574710.1_1_17:4843109-4843211:-|nuORF	REV__ENST00000574710.1_1_17:4843109-4843211:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	505.1662292480469	2	504.797478	1007.5804	-0.77433	-0.00039088	2.3767	0.0011998	1.6024	0.00080889	504.7999022065584	80.785	0.51042	81.53	81.265	81.776	0.74474					12	9	2	0	0	0	0.92389	1	30761	30761		3.9444	0	1	805650	+		16341	17535	11853	11942	15979	15979					0.07691538690903599
GALKKVLWKN	10	Unmodified	_GALKKVLWKN_					0	0	0		nc|ENSG00000182477|P59922|OR2B8P	nc|ENSG00000182477|P59922|OR2B8P	nc|ENSG00000182477|P59922|OR2B8P	MULTI-SECPEP	A375_MHC_IP_R2	2	386.28887939453125	3	386.244881	1155.71281	-0.22406	-8.6544E-05	0.43686	0.00016873	0.21279	8.219E-05	386.24507512064054	65.242	0.50701	65.98	65.766	66.273	0.73812					13	9	2	0	0	0	0.93615	1	24669	24669		1.9064	0	1	779930			16342	14802	11854	11943	15980	15980					0.14118563427678055
GALLCTRCCFQ	11	Unmodified	_GALLCTRCCFQ_					0	0	0			REV__nc|ENSG00000140479|P29122-2|PCSK6	REV__nc|ENSG00000140479|P29122-2|PCSK6	MULTI-MSMS	A375_MHC_IP_R2	2	608.2479858398438	2	607.777579	1213.5406	-0.29036	-0.00017647	1.4437	0.00087747	1.1534	0.000701	607.7774208151174	93.55	1.8236	94.295	93.146	94.969	0.74473					72	35	4	0	0	0	0.73228	1	35332	35332		6.7232	0.51738	1	10404000	+		16343	19217	11855	11944	15981	15981					-0.0576241563799158
GALLRASDLW	10	Unmodified	_GALLRASDLW_					0	0	0		ENST00000453909.3_1_X:46387515-46388371:-|nuORF	ENST00000453909.3_1_X:46387515-46388371:-|nuORF	ENST00000453909.3_1_X:46387515-46388371:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	551.723876953125	2	551.306198	1100.59784	-0.42853	-0.00023625	0.63685	0.0003511	0.20832	0.00011485	551.3066889107583	71.104	0.51376	71.104	70.749	71.262	0					11	7	2	0	0	0	0.92957	1	25703	25703		3.2813	0	1	2456000			16344	12105	11856	11945	15982	15982					0.051568342258860866
GALLYHYSL	9	Unmodified	_GALLYHYSL_					0	0	0		ENSG00000099910|ENST00000328879|KLHL22;nc|ENSG00000099910|Q53GT1-3|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	MULTI-SECPEP	A375_MHC_IP_R1	1	518.203369140625	2	518.776742	1035.53893	-0.54149	-0.00028091	-0.32378	-0.00016797	-0.86527	-0.00044888	518.776187088054	87.686	0.50777	87.686	87.39	87.898	0					12	9	2	0	0	0	0.67221	1	32242	32242		2.0598	0	1	1388100			16345	2092	11857	11946	15983	15983					0.022583579315551106
GALNRTRI	8	Unmodified	_GALNRTRI_					0	0	0		ENST00000558616.1_1_15:40062782-40093530:-|nuORF	ENST00000558616.1_1_15:40062782-40093530:-|nuORF	ENST00000558616.1_1_15:40062782-40093530:-|nuORF	MSMS	A375_MHC_IP_R2	2	450.6694030761719	2	450.772326	899.530098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.85	1	80.595	80.095	81.095	0.74474								0	0	0	0.16876	1	30310	30310		2.5775	0	1				16346	13469	11858	11947	15984	15984					0.07631429085733998
GALPIVFAYF	10	Unmodified	_GALPIVFAYF_					0	0	0		nc|ENSG00000185518|Q7L1I2-2|SV2B;ENSG00000185518|ENST00000394232|SV2B	nc|ENSG00000185518|Q7L1I2-2|SV2B	nc|ENSG00000185518|Q7L1I2-2|SV2B	MULTI-SECPEP	A375_MHC_IP_R1	1	366.2427673339844	3	366.539182	1096.59572	0.025078	9.1922E-06	-1.9998	-0.000733	-1.9747	-0.0007238	366.5389985056479	39.537	0.40381	39.537	39.441	39.845	0					10	7	2	0	0	0	0.93404	1	13640	13640		0.77653	0	1	930110			16347	8671	11859	11948	15985	15985					0.05128405488062526
GALQKHKAL	9	Unmodified	_GALQKHKAL_					0	0	0		SPTBN5|p.Q2777Rfs*33|1|0.22|ENSG00000137877|chr15:41857606-41857609|CTGG/-|frameshift_variant;ENSG00000137877|ENST00000320955|SPTBN5	SPTBN5|p.Q2777Rfs*33|1|0.22|ENSG00000137877|chr15:41857606-41857609|CTGG/-|frameshift_variant	SPTBN5|p.Q2777Rfs*33|1|0.22|ENSG00000137877|chr15:41857606-41857609|CTGG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6978759765625	2	483.298176	964.581799	-0.5021	-0.00024266	-0.14019	-6.7755E-05	-0.64229	-0.00031042	483.29814982012334	42.918	0.709	43.69	43.319	44.028	0.7724					36	13	4	0	0	0	0.74651	1	15990	15990		4.756	0	1	4303700			16348	4933	11860	11949	15986	15986					0.09809172779637265
GALRLQIAQL	10	Unmodified	_GALRLQIAQL_					0	0	0		ENSG00000143382|ENST00000271643|ADAMTSL4;nc|ENSG00000143382|Q6UY14-3|ADAMTSL4;nc|ENSG00000143382|Q6UY14-2|ADAMTSL4	ENSG00000143382|ENST00000271643|ADAMTSL4	ENSG00000143382|ENST00000271643|ADAMTSL4	MULTI-SECPEP	A375_MHC_IP_R2	2	541.0490112304688	2	541.837665	1081.66078	-0.83081	-0.00045016	-1.4562	-0.00078903	-2.287	-0.0012392	542.3381470850812	77.899	0.35982	78.642	78.416	78.776	0.74294					10	6	2	0	0	0	0.89109	1	29501	29501		11.64	0	1	967870			16349	5380	11861	11950	15987	15987					0.1232140001393418
GALRLRVK	8	Unmodified	_GALRLRVK_					0	0	0		nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B;ENST00000534043.1_1_1:200971202-200971469:-|nuORF	nc|ENSG00000116852|O75037-3|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	MULTI-SECPEP	A375_MHC_IP_R1	1	913.2830810546875	1	912.610146	911.602869	0.081809	7.466E-05	-0.19662	-0.00017944	-0.11481	-0.00010478	912.6109789530428	117.69	2.8941	117.69	115.48	118.37	0					72	56	2	0	0	0	0.972	1	43081	43081		2.5775	0	1	40747000			16350	3438	11862	11951	15988	15988					0.1435318287916516
GALRVLNSYW	10	Unmodified	_GALRVLNSYW_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;nc|ENSG00000174748|P61313-2|RPL15	ENSG00000174748|ENST00000307839|RPL15;nc|ENSG00000174748|P61313-2|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	A375_MHC_IP_R1	1	590.45849609375	2	589.819473	1177.62439	-0.3936	-0.00023215	-2.4659	-0.0014544	-2.8595	-0.0016866	589.8184510093453	95.44	0.45459	95.44	95.261	95.716	0					15	8	2	0	0	0	0.70012	1	35040	35040		12.241	2.1667	1	2448200			16351	7898;14776	11863	11952	15989	15989					0.04268523117229961
GALSNSESI	9	Unmodified	_GALSNSESI_					0	0	0		nc|ENSG00000124356|O95630-2|STAMBP;ENSG00000124356|ENST00000394070|STAMBP	nc|ENSG00000124356|O95630-2|STAMBP	nc|ENSG00000124356|O95630-2|STAMBP	MULTI-SECPEP	A375_MHC_IP_R2	2	439.30267333984375	2	439.216714	876.418876	-0.40591	-0.00017828	0.42474	0.00018655	0.018825	8.2682E-06	439.2168625590878	39.402	0.71318	40.177	39.658	40.371	0.77451					22	13	3	0	0	0	0.67221	1	14351	14351		2.0598	0	1	3229400			16352	3894	11864	11953	15990	15990					-0.024276751328443424
GALTPQDI	8	Unmodified	_GALTPQDI_					0	0	0		ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1	ENSG00000135476|ENST00000257934|ESPL1	ENSG00000135476|ENST00000257934|ESPL1	MULTI-SECPEP	A375_MHC_IP_R2	2	407.6268005371094	2	407.718893	813.423233	-0.18745	-7.6425E-05	-0.50285	-0.00020502	-0.69029	-0.00028145	407.71879178433863	34.667	0.81163	35.43	35.017	35.829	0.76338					18	15	2	0	0	0	0.90224	1	12642	12642		13.508	0	1	1176500			16353	4690	11865	11954	15991	15991					0.009058340807087006
GALWKHFDF	9	Unmodified	_GALWKHFDF_					0	0	0		TRIM71|p.S749F|2|0.68|ENSG00000206557|chr3:32891450-32891450|C/T|missense_variant	TRIM71|p.S749F|2|0.68|ENSG00000206557|chr3:32891450-32891450|C/T|missense_variant	TRIM71|p.S749F|2|0.68|ENSG00000206557|chr3:32891450-32891450|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	373.6285400390625	3	374.190665	1119.55016	0.16141	6.0397E-05	3.442	0.001288	3.6034	0.0013484	374.52653210503627	24.312	0.45565	24.312	24.092	24.547	0					11	8	2	0	0	0	0.79683	1	6945	6945		0.26902	0.062163	1	2015200			16354	30075	11866	11955	15992	15992					-0.00482819974308768
GALWKHFDF	9	Unmodified	_GALWKHFDF_					0	0	0		TRIM71|p.S749F|2|0.68|ENSG00000206557|chr3:32891450-32891450|C/T|missense_variant	TRIM71|p.S749F|2|0.68|ENSG00000206557|chr3:32891450-32891450|C/T|missense_variant	TRIM71|p.S749F|2|0.68|ENSG00000206557|chr3:32891450-32891450|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	374.190665	1119.55016	0.10628	3.9767E-05	-0.74029	-0.00027701	-0.63401	-0.00023724	374.52528566648095	23.899	0.307	24.529	24.384	24.691	0.63014	0.10823	-0.0024753	NaN	0.26902	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1557000			16355	30075	11866	11955							-0.00482819974308768
GALWSSFVL	9	Unmodified	_GALWSSFVL_					0	0	0			REV__ENSG00000187857|ENST00000641576|OR6C75	REV__ENSG00000187857|ENST00000641576|OR6C75	MULTI-SECPEP	A375_MHC_IP_R2	2	490.6654357910156	2	490.26601	978.517468	-0.50756	-0.00024884	-0.55656	-0.00027286	-1.0641	-0.0005217	490.2656605818404	79.997	0.60971	80.742	80.401	81.011	0.74473					19	11	2	0	0	0	0.28418	1	30352	30352		30.225	30.225	1	2877900	+		16356	22053	11867	11956	15993	15993					0.027349729028628644
GALWSSFVL	9	Unmodified	_GALWSSFVL_					0	0	0			REV__ENSG00000187857|ENST00000641576|OR6C75	REV__ENSG00000187857|ENST00000641576|OR6C75	MULTI-MATCH	A375_MHC_IP_R1	1		2	490.26601	978.517468	-0.39927	-0.00019575	-0.17427	-8.5438E-05	-0.57354	-0.00028119	490.2658347986402	80.993	1.7229	80.993	80.238	81.961	0	0.12528	0.00016531	NaN	30.225	49	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2761100	+		16357	22053	11867	11956							0.027349729028628644
GANDGDAT	8	Unmodified	_GANDGDAT_					0	0	0			REV__ENSG00000153879|ENST00000284000|CEBPG	REV__ENSG00000153879|ENST00000284000|CEBPG	MSMS	A375_MHC_IP_R2	2	360.6121826171875	2	360.643382	719.272212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.698	1	98.454	97.954	98.954	0.75586								0	0	0	0.16876	1	37078	37078		0.79363	0	1		+		16358	19852	11868	11957	15994	15994					-0.09865352297958907
GANGKESLLY	10	Unmodified	_GANGKESLLY_					0	0	0			REV__nc|ENSG00000101194|Q9BYT1-3|SLC17A9	REV__nc|ENSG00000101194|Q9BYT1-3|SLC17A9	MULTI-MSMS	A375_MHC_IP_R2	2	526.6743774414062	2	526.274564	1050.53457	-0.69509	-0.00036581	0.73005	0.0003842	0.034955	1.8396E-05	526.2750247299642	26.845	0.40973	27.505	27.313	27.722	0.65992					12	7	2	0	0	0	0.6806	1	9148	9148		14.838	1.7958	1	2266800	+		16359	25357	11869	11958	15995	15995					0.011328487180207958
GANKLAIAAQ	10	Unmodified	_GANKLAIAAQ_					0	0	0			REV__nc|ENSG00000132535|P78352-3|DLG4	REV__nc|ENSG00000132535|P78352-3|DLG4	MULTI-SECPEP	A375_MHC_IP_R2	2	479.1792297363281	2	478.779816	955.545079	-0.78636	-0.00037649	-0.25231	-0.0001208	-1.0387	-0.00049729	478.7796111133093	62.005	0.60807	62.747	62.471	63.079	0.74263					22	11	3	0	0	0	0.8125	1	23538	23538		18.146	0	1	2180900	+		16360	18660	11870	11959	15996	15996					0.0655287616308442
GANNPEGENW	10	Unmodified	_GANNPEGENW_					0	0	0			REV__ENSG00000165471|ENST00000674931|MBL2	REV__ENSG00000165471|ENST00000674931|MBL2	MULTI-MSMS	A375_MHC_IP_R2	2	544.70849609375	2	544.225602	1086.43665	-1.3727	-0.00074706	-0.0023165	-1.2607E-06	-1.375	-0.00074832	544.2256289398266	53.457	0.5614	54.208	53.893	54.454	0.75105					15	10	2	0	0	0	0.6806	2	20208	20193;20208		14.838	2.5976	1	4358000	+		16361	20585	11871	11960	15997;15998	15998					-0.10310959878006543
GANPAARMY	9	Oxidation (M)	_GANPAARM(Oxidation (M))Y_		GANPAARM(1)Y		GANPAARM(46)Y	0	0	1		ENST00000509705.3_1_19:39390655-39398344:+|nuORF;nc|ENSG00000104825|Q15653-2|NFKBIB;ENSG00000104825|ENST00000313582|NFKBIB	ENST00000509705.3_1_19:39390655-39398344:+|nuORF	ENST00000509705.3_1_19:39390655-39398344:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	484.1263732910156	2	483.726726	965.4389	-0.018232	-8.8193E-06	-0.27925	-0.00013508	-0.29748	-0.0001439	483.7264712639173	21.681	0.6082	21.681	21.505	22.113	0					15	11	2	0	0	0	0.12592	1	5765	5765		46.021	22.873	1	2068800			16362	2540	11872	11961	15999	15999		115			-0.045202026738934364
GANPAARMY	9	Oxidation (M)	_GANPAARM(Oxidation (M))Y_					0	0	1		ENST00000509705.3_1_19:39390655-39398344:+|nuORF;nc|ENSG00000104825|Q15653-2|NFKBIB;ENSG00000104825|ENST00000313582|NFKBIB	ENST00000509705.3_1_19:39390655-39398344:+|nuORF	ENST00000509705.3_1_19:39390655-39398344:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	483.726726	965.4389	-0.92321	-0.00044658	0.52108	0.00025206	-0.40213	-0.00019452	483.7269115344934	21.255	0.25276	21.874	21.777	22.03	0.61932	0.096653	0.000713	NaN	46.021	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1085100			16363	2540	11872	11961				115			-0.045202026738934364
GAPDVDGPAGL	11	Unmodified	_GAPDVDGPAGL_					0	0	0			REV__ENST00000462673.1_1_3:49354761-49355744:-|nuORF	REV__ENST00000462673.1_1_3:49354761-49355744:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	485.136962890625	2	484.737814	967.461075	-0.50046	-0.00024259	-0.15236	-7.3854E-05	-0.65282	-0.00031645	484.7376201750154	98.717	0.86298	99.477	99.201	100.06	0.75977					34	16	3	0	0	0	0.79632	1	37396	37396		18.146	5.9057	1	28683000	+		16364	24994	11873	11962	16000	16000					-0.023956997244795275
GAPGATRQH	9	Unmodified	_GAPGATRQH_					0	0	0			REV__ENST00000393392.6_1_11:82951967-82959017:+|nuORF	REV__ENST00000393392.6_1_11:82951967-82959017:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	894.106689453125	1	894.454039	893.446762	-0.41693	-0.00037292	-0.95593	-0.00085503	-1.3729	-0.001228	894.4542445889218	130.42	0.2027	130.42	130.26	130.46	0					5	3	2	0	0	0	0.62767	1	50184	50184		23.148	12.324	1	6357000	+		16365	24293	11874	11963	16001	16001					-0.004223073621005824
GAPHGPVY	8	Unmodified	_GAPHGPVY_					0	0	0		nc|ENSG00000163508|O95936|EOMES;ENSG00000163508|ENST00000449599|EOMES	nc|ENSG00000163508|O95936|EOMES	nc|ENSG00000163508|O95936|EOMES	MSMS	A375_MHC_IP_R1	1	399.1309509277344	2	399.20067	796.386788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.71	1	104.71	104.21	105.21	0								0	0	0	0.16876	1	38447	38447		2.8892	0	1				16366	6671	11875	11964	16002	16002					-0.019549980253373178
GAPLFVGEG	9	Unmodified	_GAPLFVGEG_					0	0	0			REV__ENST00000555241.5_2_14:64663518-64663803:+|nuORF	REV__ENST00000555241.5_2_14:64663518-64663803:+|nuORF	MSMS	A375_MHC_IP_R1	1	423.6214904785156	2	423.721436	845.428318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.9	1	104.9	104.4	105.4	0								0	0	0	0.15486	1	38516	38516		8.5933	0	1		+		16367	26095	11876	11965	16003	16003					-0.0005786205665572197
GAPLLKQL	8	Unmodified	_GAPLLKQL_					0	0	0		nc|ENSG00000172915|Q8NFP9|NBEA;ENSG00000172915|ENST00000379939|NBEA	nc|ENSG00000172915|Q8NFP9|NBEA	nc|ENSG00000172915|Q8NFP9|NBEA	MULTI-MSMS	A375_MHC_IP_R2	2	420.24346923828125	2	420.271096	838.527639	-0.39085	-0.00016426	0.029624	1.245E-05	-0.36122	-0.00015181	420.2710651684362	60.87	0.55495	61.615	61.314	61.869	0.74503					16	10	2	0	0	0	0.77123	1	23051	23051		14.582	0	1	1944400			16368	7745	11877	11966	16004	16004					0.1019158062807719
GAPLPSLV	8	Unmodified	_GAPLPSLV_					0	0	0			REV__ENST00000546536.5_1_14:105957646-105963882:+|nuORF	REV__ENST00000546536.5_1_14:105957646-105963882:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	753.431396484375	1	753.450517	752.44324	-0.88882	-0.00066968	0.32195	0.00024258	-0.56686	-0.0004271	753.450631553315	77.702	1.021	78.445	78.01	79.031	0.74293					41	19	3	0	0	0	0.77554	1	29374	29374		11.114	0	1	16171000	+		16369	26001	11878	11967	16005	16005					0.05711629811332841
GAPLPSLV	8	Unmodified	_GAPLPSLV_					0	0	0			REV__ENST00000546536.5_1_14:105957646-105963882:+|nuORF	REV__ENST00000546536.5_1_14:105957646-105963882:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	753.450517	752.44324	-0.34836	-0.00026247	-0.082614	-6.2246E-05	-0.43097	-0.00032472	753.4503586133764	78.53	0.96208	78.53	78.099	79.061	0	0.042462	-0.00015862	NaN	11.114	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17225000	+		16370	26001	11878	11967							0.05711629811332841
GAPLQLKI	8	Unmodified	_GAPLQLKI_					0	0	0			REV__tr|U7T0U6|U7T0U6_FUSNULargeribosomalsubunitproteinuL11OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplKPE=3SV=1	REV__tr|U7T0U6|U7T0U6_FUSNULargeribosomalsubunitproteinuL11OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplKPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	420.67120361328125	2	420.271096	838.527639	-0.39085	-0.00016426	0.029624	1.245E-05	-0.36122	-0.00015181	420.2710651684362	60.87	0.55495	61.615	61.314	61.869	0.74503					16	10	2	0	0	0	0.7779	1	23101	23101		2.5775	0	1	1944400	+		16371	28684	11879	11968	16006	16006					0.1019158062807719
GAPLTSPVA	9	Unmodified	_GAPLTSPVA_					0	0	0			REV__ENST00000599536.1_2_19:49967120-49989319:+|nuORF	REV__ENST00000599536.1_2_19:49967120-49989319:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	812.2998046875	1	812.451245	811.443968	-0.49433	-0.00040162	0.39926	0.00032438	-0.095071	-7.724E-05	812.4513896381159	65.266	0.55927	65.266	64.954	65.514	0					23	10	3	0	0	0	0.40041	1	23681	23681		30.225	0	1	7627600	+		16372	20214	11880	11969	16007	16007					0.030704244603725783
GAPLTSPVA	9	Unmodified	_GAPLTSPVA_					0	0	0			REV__ENST00000599536.1_2_19:49967120-49989319:+|nuORF	REV__ENST00000599536.1_2_19:49967120-49989319:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	812.8510131835938	1	812.451245	811.443968	-0.79596	-0.00064667	0.30064	0.00024426	-0.49531	-0.00040242	812.4513647744842	64.493	0.66199	65.234	64.902	65.564	0.74022					19	12	2	0	0	0	0.1978	1	24560	24560		38.151	7.9264	1	8306300	+		16373	20214	11880	11969	16008	16008					0.030704244603725783
GAPMPGKVI	9	Unmodified	_GAPMPGKVI_					0	0	0		ENSG00000173599|ENST00000393960|PC;PC|p.D1122H|1|0.7|ENSG00000173599|chr11:66849072-66849072|C/G|missense_variant;ENST00000528224.1_1_11:66616372-66617354:-|nuORF	ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	MSMS	A375_MHC_IP_R1	1	435.17559814453125	2	435.249306	868.484059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.541	1	64.541	64.041	65.041	0								0	0	0	0.15486	1	23354	23354		13.508	2.3934	1				16374	7814	11881	11970	16009	16009					0.04455647859299461
GAPPAGQT	8	Unmodified	_GAPPAGQT_					0	0	0			REV__ENST00000487120.5_1_16:67848301-67859829:+|nuORF	REV__ENST00000487120.5_1_16:67848301-67859829:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	698.808349609375	1	698.34678	697.339503	-0.67369	-0.00047047	-2.5736	-0.0017973	-3.2473	-0.0022677	698.3457020850373	83.31	0.30394	84.05	83.848	84.152	0.73962					8	5	2	0	0	0	0.972	1	31593	31593		2.5775	0	1	1104100	+		16375	25330	11882	11971	16010	16010					-0.021272772963470743
GAPRQPAGAGP	11	Unmodified	_GAPRQPAGAGP_					0	0	0			REV__ENST00000467891.5_1_22:50699812-50700103:-|nuORF	REV__ENST00000467891.5_1_22:50699812-50700103:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	490.1593017578125	2	489.759415	977.504277	-0.36379	-0.00017817	0.25166	0.00012326	-0.11212	-5.4913E-05	489.7595486769948	38.515	0.30782	38.515	38.371	38.679	0					9	5	2	0	0	0	0.88538	1	13131	13131		24.021	24.021	1	2614200	+		16376	25064	11883	11972	16011	16011					0.014625348434719854
GAPRQPAGAGP	11	Unmodified	_GAPRQPAGAGP_					0	0	0			REV__ENST00000467891.5_1_22:50699812-50700103:-|nuORF	REV__ENST00000467891.5_1_22:50699812-50700103:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	489.759415	977.504277	-0.85477	-0.00041863	-0.309	-0.00015134	-1.1638	-0.00056997	489.7595497786847	37.537	0.30811	38.308	38.12	38.429	0.7709	-0.1039	-0.00049148	NaN	24.021	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2095400	+		16377	25064	11883	11972							0.014625348434719854
GAPSHLHTP	9	Unmodified	_GAPSHLHTP_					0	0	0		ENSG00000139800|ENST00000267294|ZIC5	ENSG00000139800|ENST00000267294|ZIC5	ENSG00000139800|ENST00000267294|ZIC5	MULTI-MSMS	A375_MHC_IP_R2	2	916.3228149414062	1	916.463541	915.456264	-0.31518	-0.00028885	-3.2312	-0.0029612	-3.5463	-0.0032501	916.462722137072	124.85	0.40324	125.18	124.95	125.35	0.32969					9	7	2	0	0	0	0.63811	1	48383	48383		12.532	3.1841	1	46565000			16378	5112	11884	11973	16012	16012					-0.004845390765922275
GAPTRKWVMSM	11	Unmodified	_GAPTRKWVMSM_					0	0	0			REV__ENSG00000135298|ENST00000370598|ADGRB3	REV__ENSG00000135298|ENST00000370598|ADGRB3	MULTI-SECPEP	A375_MHC_IP_R1	1	631.9841918945312	2	632.320468	1262.62638	-0.97001	-0.00061336	-0.23445	-0.00014824	-1.2045	-0.0007616	632.3201961414896	67.367	0.56169	67.367	67.143	67.704	0					22	10	3	0	0	0	0.98748	1	24385	24385		8.7454	0	1	5767200	+		16379	18840	11885	11974	16013	16013					0.005574925391556462
GAQDGKIKVW	10	Unmodified	_GAQDGKIKVW_					0	0	0		ENSG00000122692|ENST00000397149|SMU1;nc|ENSG00000122692|Q2TAY7-2|SMU1;ENST00000379752.5_1_1:157029186-157029948:-|nuORF	ENSG00000122692|ENST00000397149|SMU1	ENSG00000122692|ENST00000397149|SMU1	MULTI-SECPEP	A375_MHC_IP_R2	2	368.2732849121094	3	367.873224	1100.59784	-0.31971	-0.00011761	0.84321	0.0003102	0.52351	0.00019259	367.8735816688249	37.294	0.60979	38.065	37.665	38.275	0.7709					16	11	2	0	0	0	0.51493	1	13640	13640		32.898	9.108	1	7318400			16380	3800	11886	11975	16014	16014					0.051568342258860866
GAQELRKRKQ	10	Unmodified	_GAQELRKRKQ_					0	0	0			REV__ENSG00000064042|ENST00000503057|LIMCH1	REV__ENSG00000064042|ENST00000503057|LIMCH1	MSMS	A375_MHC_IP_R1	1	607.3577880859375	2	607.359828	1212.7051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.099	1	85.099	84.599	85.599	0								0	0	0	0.15308	1	31184	31184		10.824	3.5347	1		+		16381	16471	11887	11976	16015	16015					0.10725804160142616
GAQRGGLWRSE	11	Unmodified	_GAQRGGLWRSE_					0	0	0		ENST00000269097.8_1_17:42148148-42148361:+|nuORF	ENST00000269097.8_1_17:42148148-42148361:+|nuORF	ENST00000269097.8_1_17:42148148-42148361:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	609.2117919921875	2	608.81271	1215.61087	-0.61281	-0.00037309	-0.67783	-0.00041267	-1.2906	-0.00078575	608.8121916322659	35.842	0.55914	36.605	36.283	36.842	0.76338					23	10	3	0	0	0	0.60761	1	12997	12997		36.506	0	1	12176000			16382	10366	11888	11977	16016	16016					0.01168665337991115
GARAAQKSPYH	11	Unmodified	_GARAAQKSPYH_					0	0	0			REV__ENST00000375153.7_1_1:19638904-19639291:+|nuORF	REV__ENST00000375153.7_1_1:19638904-19639291:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	396.2557067871094	3	395.875628	1184.60505	-0.14552	-5.7608E-05	1.4764	0.00058446	1.3308	0.00052685	395.87652950588705	30.595	0.4039	31.313	31.013	31.417	0.71857					13	7	2	0	0	0	0.99227	1	10707	10707		2.6312	0	1	1419700	+		16383	24121	11889	11978	16017	16017					0.02013566826326496
GARGPLLL	8	Unmodified	_GARGPLLL_					0	0	0		ENST00000311148.8_1_14:74004058-74004349:+|nuORF	ENST00000311148.8_1_14:74004058-74004349:+|nuORF	ENST00000311148.8_1_14:74004058-74004349:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	399.1556701660156	2	398.755613	795.496673	-0.079668	-3.1768E-05	0.43501	0.00017346	0.35534	0.00014169	398.7557355554781	62.583	0.615	62.583	62.351	62.966	0					23	11	3	0	0	0	0.82569	1	22615	22615		36.466	0	1	4964500			16384	10625	11890	11979	16018	16018					0.09074427313851174
GARGPLLL	8	Unmodified	_GARGPLLL_					0	0	0		ENST00000311148.8_1_14:74004058-74004349:+|nuORF	ENST00000311148.8_1_14:74004058-74004349:+|nuORF	ENST00000311148.8_1_14:74004058-74004349:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	399.15545654296875	2	398.755613	795.496673	-0.39401	-0.00015711	-0.08445	-3.3675E-05	-0.47846	-0.00019079	398.75552821342774	61.552	0.60398	62.297	62.02	62.624	0.74503					18	11	2	0	0	0	0.82569	1	23324	23324		28.173	0	1	4285900			16385	10625	11890	11979	16019	16019					0.09074427313851174
GARIQPLL	8	Unmodified	_GARIQPLL_					0	0	0			REV__ENST00000527629.5_1_11:58912289-58913312:+|nuORF	REV__ENST00000527629.5_1_11:58912289-58913312:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	434.6744079589844	2	434.27417	866.533787	-0.23175	-0.00010064	0.23239	0.00010092	0.0006381	2.7711E-07	434.2742694630885	64.725	1.7792	64.725	64.04	65.819	0					109	34	5	0	0	0	0.48378	1	23576	23576		49.669	0	1	257160000	+		16386	25791	11891	11980	16020	16020					0.09518098859598467
GARIQPLL	8	Unmodified	_GARIQPLL_					0	0	0			REV__ENST00000527629.5_1_11:58912289-58913312:+|nuORF	REV__ENST00000527629.5_1_11:58912289-58913312:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	434.67413330078125	2	434.27417	866.533787	-0.19771	-8.5861E-05	-0.1264	-5.4891E-05	-0.32411	-0.00014075	434.27412902111564	63.68	1.628	64.42	63.936	65.564	0.74022					109	31	5	0	0	0	0.70179	1	24301	24301		34.187	0	1	278460000	+		16387	25791	11891	11980	16021	16021					0.09518098859598467
GARLFYQLK	9	Unmodified	_GARLFYQLK_					0	0	0			REV__FAT2|p.E1066K|1|0.53|ENSG00000086570|chr5:151565736-151565736|C/T|missense_variant	REV__FAT2|p.E1066K|1|0.53|ENSG00000086570|chr5:151565736-151565736|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	365.9608154296875	3	365.881831	1094.62366	-0.21516	-7.8722E-05	0.32348	0.00011835	0.10832	3.9631E-05	365.88199778839066	29.21	0.30552	29.21	29.047	29.353	0					9	5	2	0	0	0	0.62767	1	9170	9170		11.495	0	1	4027000	+		16388	26617	11892	11981	16022	16022					0.08013728468154113
GARLGRQLHP	10	Unmodified	_GARLGRQLHP_					0	0	0			REV__ENST00000350796.7_1_7:6203005-6203218:-|nuORF	REV__ENST00000350796.7_1_7:6203005-6203218:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1105.2244873046875	1	1104.63849	1103.63121	-0.56168	-0.00062046	-1.0922	-0.0012064	-1.6538	-0.0018269	1104.6373421853884	123.53	0.25198	123.53	123.44	123.69	0					5	4	2	0	0	0	0.92957	1	46234	46234		6.2058	0	1	9625800	+		16389	23795	11893	11982	16023	16023					0.08353880788445167
GASFSCYDC	9	Unmodified	_GASFSCYDC_					0	0	0		ENST00000535750.5_1_11:64084240-64084336:-|nuORF	ENST00000535750.5_1_11:64084240-64084336:-|nuORF	ENST00000535750.5_1_11:64084240-64084336:-|nuORF	MSMS	A375_MHC_IP_R2	2	476.59765625	2	476.662403	951.310253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.517	1	64.257	63.757	64.757	0.74022								0	0	0	0.15486	1	24081	24081		12.532	7.3009	1				16390	13231	11894	11983	16024	16024					-0.16734925699154246
GASHHSGG	8	Unmodified	_GASHHSGG_					0	0	0			REV__ENST00000341418.9_1_15:68117364-68118504:+|nuORF	REV__ENST00000341418.9_1_15:68117364-68118504:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	709.4970703125	1	709.301227	708.29395	-0.35609	-0.00025257	3.9525	0.0028035	3.5965	0.002551	709.3081595181977	107.34	0.76616	107.34	107.03	107.8	0					22	14	3	0	0	0	0.972	1	39469	39469		0.79363	0	1	2000100	+		16391	23733	11895	11984	16025	16025					-0.07186502758702318
GASLQEVDRAF	11	Unmodified	_GASLQEVDRAF_					0	0	0			REV__ENST00000482941.1_1_7:33169401-33192318:+|nuORF	REV__ENST00000482941.1_1_7:33169401-33192318:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	398.6118469238281	3	398.20341	1191.5884	-0.11374	-4.5294E-05	-0.13116	-5.2227E-05	-0.2449	-9.752E-05	398.2030748543402	28.661	0.5054	28.661	28.491	28.996	0					12	9	2	0	0	0	0.9836	1	8892	8892		6.2344	4.1483	1	2942900	+		16392	23097	11896	11985	16026	16026					0.0002702114970816183
GASRKYSI	8	Unmodified	_GASRKYSI_					0	0	0		nc|ENSG00000009335|Q15386-3|UBE3C	nc|ENSG00000009335|Q15386-3|UBE3C	nc|ENSG00000009335|Q15386-3|UBE3C	MULTI-MSMS	A375_MHC_IP_R1	1	441.64569091796875	2	441.245609	880.476666	-0.201	-8.869E-05	0.59014	0.0002604	0.38914	0.00017171	441.2457231709473	65.329	0.61079	65.329	64.954	65.565	0					23	11	3	0	0	0	0.61116	1	23682	23682		44.407	2.3125	1	2219900			16393	14453	11897	11986	16027	16027					0.0316463158321767
GASRKYSI	8	Unmodified	_GASRKYSI_					0	0	0		nc|ENSG00000009335|Q15386-3|UBE3C	nc|ENSG00000009335|Q15386-3|UBE3C	nc|ENSG00000009335|Q15386-3|UBE3C	MULTI-MSMS	A375_MHC_IP_R2	2	441.6453552246094	2	441.245609	880.476666	-0.27238	-0.00012019	-0.22153	-9.7751E-05	-0.49392	-0.00021794	441.2454901453268	64.442	0.71342	65.182	64.85	65.564	0.74022					23	13	2	0	0	0	0.51581	1	24458	24458		48.346	2.3249	1	2297400			16394	14453	11897	11986	16028	16028					0.0316463158321767
GASVGAEGTY	10	Unmodified	_GASVGAEGTY_					0	0	0			REV__ENST00000373178.4_1_1:36559063-36559231:+|nuORF	REV__ENST00000373178.4_1_1:36559063-36559231:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	455.6370849609375	2	456.208889	910.403226	-0.40051	-0.00018272	-0.12803	-5.841E-05	-0.52855	-0.00024113	456.2088279465788	28.064	0.2542	28.742	28.604	28.858	0.67857					8	4	2	0	0	0	0.91556	1	9650	9650		6.2058	0	1	1900400	+		16395	24084	11898	11987	16029	16029					-0.0555596164989538
GASVGPFY	8	Unmodified	_GASVGPFY_					0	0	0			REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	399.746826171875	2	399.195054	796.375555	-0.4035	-0.00016108	0.3942	0.00015736	-0.0092992	-3.7122E-06	399.19514963397563	28.966	0.81154	28.966	28.541	29.353	0					23	15	2	0	0	0	0.77488	1	8928	8928		13.508	0	1	1978500	+		16396	28607	11899	11988	16030	16030					-0.030778201194834764
GASYSVNFS	9	Unmodified	_GASYSVNFS_					0	0	0		ENST00000400000.6_1_18:9954209-9954779:+|nuORF	ENST00000400000.6_1_18:9954209-9954779:+|nuORF	ENST00000400000.6_1_18:9954209-9954779:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	466.11578369140625	2	466.211432	930.408311	-0.7062	-0.00032924	0.58125	0.00027098	-0.12495	-5.8252E-05	466.211733615461	45.359	0.91232	46.124	45.59	46.503	0.76519					37	17	3	0	0	0	0.34064	1	17064	17064		27.629	3.6082	1	4158400			16397	11548	11900	11989	16031	16031					-0.05967657787277858
GATLFNKEEH	10	Unmodified	_GATLFNKEEH_					0	0	0		ENSG00000179476|ENST00000325192|C14orf28	ENSG00000179476|ENST00000325192|C14orf28	ENSG00000179476|ENST00000325192|C14orf28	MULTI-SECPEP	A375_MHC_IP_R1	1	382.280517578125	3	382.524372	1144.55129	0.17194	6.5773E-05	-0.59747	-0.00022855	-0.42553	-0.00016278	382.52436079825344	25.699	0.50669	25.699	25.46	25.966	0					20	9	3	0	0	0	0.8528	1	7658	7658		10.315	0	1	1682900			16398	8233	11901	11990	16032	16032					-0.015206503960371265
GATLRAVTL	9	Unmodified	_GATLRAVTL_					0	0	0		chr5:114433893-114463049|128|16.21|0.03|9.33|+|0|TE_info:LTR12C,LTR12C_dup959,ERV1,LTR,donor,+,114432500,114433893|None,KCNN2|12	chr5:114433893-114463049|128|16.21|0.03|9.33|+|0|TE_info:LTR12C,LTR12C_dup959,ERV1,LTR,donor,+,114432500,114433893|None,KCNN2|12	chr5:114433893-114463049|128|16.21|0.03|9.33|+|0|TE_info:LTR12C,LTR12C_dup959,ERV1,LTR,donor,+,114432500,114433893|None,KCNN2|12	MULTI-MSMS	A375_MHC_IP_R1	1	451.6769714355469	2	451.276909	900.539266	-0.0017289	-7.8021E-07	0.028705	1.2954E-05	0.026976	1.2174E-05	451.27686616936506	51.651	0.66051	51.651	51.322	51.982	0					32	12	4	0	0	0	0.03063	1	18302	18302		74.423	14.033	1	21829000			16399	479	11902	11991	16033	16033					0.08501777651417797
GATLRAVTL	9	Unmodified	_GATLRAVTL_					0	0	0		chr5:114433893-114463049|128|16.21|0.03|9.33|+|0|TE_info:LTR12C,LTR12C_dup959,ERV1,LTR,donor,+,114432500,114433893|None,KCNN2|12	chr5:114433893-114463049|128|16.21|0.03|9.33|+|0|TE_info:LTR12C,LTR12C_dup959,ERV1,LTR,donor,+,114432500,114433893|None,KCNN2|12	chr5:114433893-114463049|128|16.21|0.03|9.33|+|0|TE_info:LTR12C,LTR12C_dup959,ERV1,LTR,donor,+,114432500,114433893|None,KCNN2|12	MULTI-SECPEP	A375_MHC_IP_R2	2	451.6764831542969	2	451.276909	900.539266	-0.40258	-0.00018167	0.13657	6.163E-05	-0.26601	-0.00012004	451.27692381368786	50.632	0.8598	51.387	50.955	51.815	0.75406					38	16	4	0	0	0	0.050875	1	18992	18992		74.423	19.649	1	26633000			16400	479	11902	11991	16034	16034					0.08501777651417797
GATNEVKSMLY	11	Unmodified	_GATNEVKSMLY_					0	0	0		ENST00000539708.5_1_12:16507186-16513330:+|nuORF	ENST00000539708.5_1_12:16507186-16513330:+|nuORF	ENST00000539708.5_1_12:16507186-16513330:+|nuORF	MSMS	A375_MHC_IP_R1	1	606.7100219726562	2	606.800088	1211.58562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.312	1	48.312	47.812	48.812	0								0	0	0	0.16179	1	17034	17034		9.3831	1.2276	1				16401	13264	11903	11992	16035	16035					-0.011705702994504463
GATPRWRWTCT	11	Unmodified	_GATPRWRWTCT_					0	0	0		ENST00000521659.5_2_17:4854417-4855367:+|nuORF	ENST00000521659.5_2_17:4854417-4855367:+|nuORF	ENST00000521659.5_2_17:4854417-4855367:+|nuORF	MSMS	A375_MHC_IP_R2	2	445.62969970703125	3	445.552268	1333.63497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.219	1	40.993	40.493	41.493	0.77451								0	0	0	0.16331	1	14885	14885		0.50596	0	1				16402	13009	11904	11993	16036	16036					-0.01849817500010431
GATQVAGKPLK	11	Unmodified	_GATQVAGKPLK_					0	0	0			REV__nc|ENSG00000111641|P46087-2|NOP2	REV__nc|ENSG00000111641|P46087-2|NOP2	MULTI-SECPEP	A375_MHC_IP_R1	1	357.6168212890625	3	357.216991	1068.62914	-0.17479	-6.2438E-05	0.13537	4.8356E-05	-0.039421	-1.4082E-05	357.216862699832	36.504	0.45855	36.504	36.236	36.695	0					18	8	3	0	0	0	0.9754	1	12239	12239		9.7643	6.4446	1	3163600	+		16403	27173	11905	11994	16037	16037					0.09757407259962747
GATRLLLL	8	Unmodified	_GATRLLLL_					0	0	0		ENSG00000161671|ENST00000334976|EMC10;nc|ENSG00000161671|Q5UCC4-2|EMC10	ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	MULTI-SECPEP	A375_MHC_IP_R1	1	429.1836853027344	2	428.78437	855.554188	-0.24838	-0.0001065	-0.37023	-0.00015875	-0.61861	-0.00026525	428.7840312084949	87.108	0.45605	87.108	86.781	87.237	0					14	8	2	0	0	0	0.85715	1	31992	31992		22.736	3.4793	1	1195800			16404	6483	11906	11995	16038	16038					0.12063269519433106
GATRLLLL	8	Unmodified	_GATRLLLL_					0	0	0		ENSG00000161671|ENST00000334976|EMC10;nc|ENSG00000161671|Q5UCC4-2|EMC10	ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	MULTI-SECPEP	A375_MHC_IP_R2	2	429.1842041015625	2	428.78437	855.554188	-0.030152	-1.2929E-05	-0.59394	-0.00025467	-0.62409	-0.0002676	428.7841000744751	85.879	0.4072	86.612	86.438	86.845	0.7333					13	7	3	0	0	0	0.76996	1	32676	32676		29.082	3.6823	1	1332400			16405	6483	11906	11995	16039	16039					0.12063269519433106
GATTVPLL	8	Unmodified	_GATTVPLL_					0	0	0		ENSG00000065357|ENST00000331886|DGKA;nc|ENSG00000065357|P23743-3|DGKA;ENST00000551296.5_1_12:56330769-56334129:+|nuORF;ENST00000549097.5_1_12:56325880-56333318:+|nuORF;ENST00000547358.5_1_12:56325089-56334578:+|nuORF;ENST00000552687.6_1_12:56332455-56333318:+|nuORF;ENST00000552478.5_1_12:56332981-56334773:+|nuORF;ENST00000551739.5_1_12:56332068-56333318:+|nuORF	ENSG00000065357|ENST00000331886|DGKA	ENSG00000065357|ENST00000331886|DGKA	MULTI-MSMS	A375_MHC_IP_R1	1	771.8619995117188	1	771.461081	770.453805	-0.44797	-0.00034559	1.5967	0.0012318	1.1487	0.00088617	771.461837105384	91.795	0.40326	91.795	91.604	92.007	0					10	7	2	0	0	0	0.28913	1	33737	33737		59.795	10.126	1	1127100			16406	1378	11907	11996	16040	16040					0.05939612465761002
GAVDSTVKVW	10	Unmodified	_GAVDSTVKVW_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-SECPEP	A375_MHC_IP_R1	1	531.6845092773438	2	531.284931	1060.55531	-0.64223	-0.00034121	-0.22161	-0.00011774	-0.86384	-0.00045895	531.2846796507114	61.338	0.56169	61.338	61.024	61.585	0					20	10	3	0	0	0	0.15413	1	22084	22084		67.838	46.301	1	2773800			16407	4341	11908	11997	16041	16041					0.02745439097657254
GAVEQQSPSY	10	Unmodified	_GAVEQQSPSY_					0	0	0			REV__nc|ENSG00000148204|Q5IJ48-3|CRB2	REV__nc|ENSG00000148204|Q5IJ48-3|CRB2	MULTI-SECPEP	A375_MHC_IP_R2	2	533.1661987304688	2	533.246003	1064.47745	-1.071	-0.00057111	0.25028	0.00013346	-0.82072	-0.00043765	533.2461944921614	56.428	0.45949	57.178	56.948	57.408	0.75015					11	8	2	0	0	0	0.87163	1	21363	21363		9.3831	3.6227	1	1578600	+		16408	19618	11909	11998	16042	16042					-0.05220618558360002
GAVGSGPP	8	Unmodified	_GAVGSGPP_					0	0	0			REV__ENST00000559000.5_1_15:57210403-57210766:-|nuORF	REV__ENST00000559000.5_1_15:57210403-57210766:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	641.093505859375	1	641.325316	640.31804	-0.6473	-0.00041513	-3.5066	-0.0022489	-4.1539	-0.002664	641.3240370636652	76.485	0.55516	76.485	76.117	76.673	0					13	10	2	0	0	0	0.972	1	27893	27893		0	0	1	2019500	+		16409	26145	11910	11999	16043	16043					-0.016506623250620578
GAVKKKKE	8	Unmodified	_GAVKKKKE_					0	0	0			REV__ENST00000546876.1_1_12:114395795-114403964:-|nuORF	REV__ENST00000546876.1_1_12:114395795-114403964:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	444.6685485839844	2	444.287277	886.560001	-0.42528	-0.00018895	0.30451	0.00013529	-0.12076	-5.3654E-05	444.2875056620741	40.171	0.30471	40.945	40.777	41.082	0.77451					7	5	2	0	0	0	0.77624	1	14846	14846		8.5933	1.8701	1	867310	+		16410	18224	11911	12000	16044	16044					0.11218368031074988
GAVKKKKE	8	Unmodified	_GAVKKKKE_					0	0	0			REV__ENST00000546876.1_1_12:114395795-114403964:-|nuORF	REV__ENST00000546876.1_1_12:114395795-114403964:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	444.287277	886.560001	-0.33865	-0.00015046	0.1587	7.0507E-05	-0.17996	-7.9953E-05	444.2874221534261	41.207	0.30457	41.207	41.063	41.368	0	0.13109	-5.0115E-05	NaN	8.5933	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1073700	+		16411	18224	11911	12000							0.11218368031074988
GAVKKKKE	8	Unmodified	_GAVKKKKE_					0	0	0			REV__ENST00000546876.1_1_12:114395795-114403964:-|nuORF	REV__ENST00000546876.1_1_12:114395795-114403964:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	444.287277	886.560001	-0.42528	-0.00018895	0.30451	0.00013529	-0.12076	-5.3654E-05	444.2875056620741	40.171	0.30471	40.945	40.777	41.082	0.77451	-0.13109	7.9454E-05	NaN	8.5933	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	867310	+		16412	18224	11911	12000							0.11218368031074988
GAVNEGDKNI	10	Unmodified	_GAVNEGDKNI_					0	0	0		OR5K3|p.D269N|2|0.54|ENSG00000206536|chr3:98391470-98391470|G/A|missense_variant	OR5K3|p.D269N|2|0.54|ENSG00000206536|chr3:98391470-98391470|G/A|missense_variant	OR5K3|p.D269N|2|0.54|ENSG00000206536|chr3:98391470-98391470|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	508.67449951171875	2	508.753995	1015.49344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.731	1	25.731	25.231	26.231	0								0	0	0	0.14983	1	7561	7561		18.146	3.3081	1				16413	15090	11912	12001	16045	16045					-0.0136891232148173
GAVPAALAERV	11	Unmodified	_GAVPAALAERV_					0	0	0			REV__ENST00000544451.2_1_8:52746202-52811685:-|nuORF	REV__ENST00000544451.2_1_8:52746202-52811685:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	527.705810546875	2	527.306198	1052.59784	-0.70946	-0.0003741	0.080141	4.2259E-05	-0.62932	-0.00033184	527.3062456649992	27.002	1.1587	27.002	26.728	27.887	0					59	22	5	0	0	0	0.47886	1	8086	8086		32.786	1.5173	1	198630000	+		16414	25986	11913	12002	16046	16046					0.07364834225904815
GAVPAALAERV	11	Unmodified	_GAVPAALAERV_					0	0	0			REV__ENST00000544451.2_1_8:52746202-52811685:-|nuORF	REV__ENST00000544451.2_1_8:52746202-52811685:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	527.1297607421875	2	527.306198	1052.59784	-0.70946	-0.0003741	0.080141	4.2259E-05	-0.62932	-0.00033184	527.3062456649992	27.002	1.1587	27.002	26.728	27.887	0					59	22	5	0	0	0	0.82225	1	8156	8156		22.736	0	1	198630000	+		16415	25986	11913	12002	16047	16047					0.07364834225904815
GAVPRSLPVGT	11	Unmodified	_GAVPRSLPVGT_					0	0	0			REV__ENST00000572221.5_1_16:67906988-67909700:+|nuORF	REV__ENST00000572221.5_1_16:67906988-67909700:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	527.7056274414062	2	527.306198	1052.59784	-0.86543	-0.00045635	-0.030957	-1.6324E-05	-0.89639	-0.00047267	527.3061526781323	26.373	1.0199	27.033	26.805	27.825	0.65992					57	19	5	0	0	0	0.47047	1	8888	8888		33.445	0.65921	1	146110000	+		16416	23867	11914	12003	16048	16048					0.07364834225904815
GAVPRVTPL	9	Unmodified	_GAVPRVTPL_					0	0	0		ENST00000435251.2_1_7:76130606-76132230:+|nuORF	ENST00000435251.2_1_7:76130606-76132230:+|nuORF	ENST00000435251.2_1_7:76130606-76132230:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	455.67926025390625	2	455.279452	908.544351	-0.44307	-0.00020172	0.25071	0.00011415	-0.19236	-8.7576E-05	455.2795476785209	27.861	0.90755	27.861	27.634	28.541	0					47	17	4	0	0	0	0.1478	1	8491	8491		42.095	6.0504	1	74052000			16417	11907	11915	12004	16049	16049					0.08642081514040001
GAVQRARW	8	Unmodified	_GAVQRARW_					0	0	0		ENSG00000104899|ENST00000221496|AMH	ENSG00000104899|ENST00000221496|AMH	ENSG00000104899|ENST00000221496|AMH	MULTI-SECPEP	A375_MHC_IP_R1	1	471.6796875	2	472.264668	942.514782	-0.48073	-0.00022703	-0.56934	-0.00026888	-1.0501	-0.00049591	472.2643121956977	34.341	0.60515	34.341	34.103	34.708	0					17	11	2	0	0	0	0.93416	1	11273	11273		14.582	0	1	1181200			16418	2553	11916	12005	16050	16050					0.041225622885463054
GAVRENYTW	9	Unmodified	_GAVRENYTW_					0	0	0		ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	MULTI-MSMS	A375_MHC_IP_R2	2	548.171630859375	2	548.26453	1094.51451	-0.70213	-0.00038495	0.095613	5.2421E-05	-0.60651	-0.00033253	548.2645699807183	42.927	0.76027	43.699	43.369	44.13	0.7724					46	14	4	0	0	0	0.032333	3	15924	15924;15942;15983		72.968	42.743	1	28222000			16419	1036	11917	12006	16051;16052;16053	16051					-0.028969022219598628
GAVVTAPHS	9	Unmodified	_GAVVTAPHS_					0	0	0		ENSG00000160999|ENST00000444095|SH2B2;nc|ENSG00000160999|O14492-2|SH2B2	ENSG00000160999|ENST00000444095|SH2B2	ENSG00000160999|ENST00000444095|SH2B2	MULTI-MSMS	A375_MHC_IP_R1	1	420.1239013671875	2	419.72451	837.434466	0.16998	7.1346E-05	-0.45641	-0.00019157	-0.28643	-0.00012022	419.72386140968666	104.84	1.2703	104.84	104.13	105.4	0					49	24	3	0	0	0	0.72985	1	38489	38489		4.3292	0	1	6999600			16420	6457	11918	12007	16054	16054					0.009246561748454951
GAWKGRSGGLI	11	Unmodified	_GAWKGRSGGLI_					0	0	0		ENST00000566568.1_1_16:31121058-31121856:+|nuORF	ENST00000566568.1_1_16:31121058-31121856:+|nuORF	ENST00000566568.1_1_16:31121058-31121856:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	551.7116088867188	2	551.311815	1100.60908	-0.57969	-0.00031959	0.17642	9.7263E-05	-0.40327	-0.00022233	551.3118956448764	94.249	0.60701	94.994	94.667	95.274	0.74474					17	11	2	0	0	0	0.9754	1	35804	35804		4.897	4.897	1	3885400			16421	13561	11919	12008	16055	16055					0.06279656320066351
GAWKGRSGGLI	11	Unmodified	_GAWKGRSGGLI_					0	0	0		ENST00000566568.1_1_16:31121058-31121856:+|nuORF	ENST00000566568.1_1_16:31121058-31121856:+|nuORF	ENST00000566568.1_1_16:31121058-31121856:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	551.311815	1100.60908	-0.66293	-0.00036548	0.40288	0.00022211	-0.26005	-0.00014337	551.3119254050945	95.143	0.56172	95.143	94.853	95.415	0	0.074532	0.00018399	NaN	4.897	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3610100			16422	13561	11919	12008							0.06279656320066351
GAWLLRAVP	9	Unmodified	_GAWLLRAVP_					0	0	0			REV__ENST00000461708.1_1_2:170655414-170662397:+|nuORF	REV__ENST00000461708.1_1_2:170655414-170662397:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	491.6534118652344	2	491.795269	981.575986	-0.37771	-0.00018575	1.0201	0.0005017	0.64244	0.00031595	491.79584071935454	46.573	0.25603	47.338	47.21	47.466	0.76519					6	4	2	0	0	0	0.77834	1	17489	17489		2.0598	0.21551	1	776990	+		16423	24980	11920	12009	16056	16056					0.08446074267988024
GAWRRPPVRE	10	Unmodified	_GAWRRPPVRE_					0	0	0			REV__ENST00000436881.2_1_9:139742177-139742615:+|nuORF	REV__ENST00000436881.2_1_9:139742177-139742615:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	408.9634704589844	3	408.563384	1222.66832	-0.36277	-0.00014822	0.26777	0.0001094	-0.095003	-3.8815E-05	408.56342617013655	26.475	0.45663	27.135	26.957	27.414	0.65992					13	8	2	0	0	0	0.71619	1	8985	8985		5.0475	0.15051	1	5360100	+		16424	24770	11921	12010	16057	16057					0.06589552334207838
GAWVLLGG	8	Unmodified	_GAWVLLGG_					0	0	0		ENST00000311637.9_2_20:50215089-50215437:-|nuORF	ENST00000311637.9_2_20:50215089-50215437:-|nuORF	ENST00000311637.9_2_20:50215089-50215437:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	387.12127685546875	2	386.721239	771.427924	0.21754	8.4126E-05	0.46021	0.00017797	0.67774	0.0002621	386.7213372764204	75.735	0.45224	75.735	75.514	75.966	0					18	8	3	0	0	0	0.972	1	27593	27593		0	0	1	5395400			16425	10630	11922	12011	16058	16058					0.033067630141545123
GAYGKVFLV	9	Unmodified	_GAYGKVFLV_					0	0	0		nc|ENSG00000100784|O75582-2|RPS6KA5;ENSG00000100784|ENST00000614987|RPS6KA5;nc|ENSG00000162302|O75676-2|RPS6KA4;ENSG00000162302|ENST00000334205|RPS6KA4	nc|ENSG00000100784|O75582-2|RPS6KA5;nc|ENSG00000162302|O75676-2|RPS6KA4	nc|ENSG00000162302|O75676-2|RPS6KA4	MULTI-SECPEP	A375_MHC_IP_R1	1	477.16168212890625	2	477.276378	952.538203	-0.54829	-0.00026169	1.0521	0.00050213	0.50379	0.00024044	477.2769123467674	77.143	0.45634	77.143	76.93	77.386	0					14	8	2	0	0	0	0.47368	1	28119	28119		26.884	22.554	1	992070			16426	6517;2218	11923	12012	16059	16059					0.06003563282513369
GAYGKVFLV	9	Unmodified	_GAYGKVFLV_					0	0	0		nc|ENSG00000100784|O75582-2|RPS6KA5;ENSG00000100784|ENST00000614987|RPS6KA5;nc|ENSG00000162302|O75676-2|RPS6KA4;ENSG00000162302|ENST00000334205|RPS6KA4	nc|ENSG00000100784|O75582-2|RPS6KA5;nc|ENSG00000162302|O75676-2|RPS6KA4	nc|ENSG00000162302|O75676-2|RPS6KA4	MULTI-MSMS	A375_MHC_IP_R2	2	477.7229309082031	2	477.276378	952.538203	-0.44092	-0.00021044	-0.18885	-9.0135E-05	-0.62978	-0.00030058	477.27630539191506	90.094	0.51085	90.826	90.545	91.056	0.7318					16	9	2	0	0	0	0.60101	1	34339	34339		14.838	0.25658	1	2323400			16427	6517;2218	11923	12012	16060	16060					0.06003563282513369
GAYGKVFLV	9	Unmodified	_GAYGKVFLV_					0	0	0		nc|ENSG00000100784|O75582-2|RPS6KA5;ENSG00000100784|ENST00000614987|RPS6KA5;nc|ENSG00000162302|O75676-2|RPS6KA4;ENSG00000162302|ENST00000334205|RPS6KA4	nc|ENSG00000100784|O75582-2|RPS6KA5;nc|ENSG00000162302|O75676-2|RPS6KA4	nc|ENSG00000162302|O75676-2|RPS6KA4	MULTI-SECPEP	A375_MHC_IP_R2	2	477.16229248046875	2	477.276378	952.538203	-0.52672	-0.00025139	0.43618	0.00020818	-0.090546	-4.3215E-05	477.2765887041704	76.193	0.55904	76.934	76.691	77.25	0.74052					15	10	2	0	0	0	0.3607	1	28931	28931		42.095	27.513	1	1384300			16428	6517;2218	11923	12012	16061	16061					0.06003563282513369
GAYKYIQELW	10	Unmodified	_GAYKYIQELW_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;nc|ENSG00000174748|P61313-2|RPL15	ENSG00000174748|ENST00000307839|RPL15;nc|ENSG00000174748|P61313-2|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-SECPEP	A375_MHC_IP_R1	1	636.226318359375	2	635.826963	1269.63937	-0.63948	-0.0004066	0.23887	0.00015188	-0.40061	-0.00025472	635.8270213565227	100.89	1.1133	100.89	100.58	101.7	0					54	21	4	0	0	0	0.01722	1	37040	37040		125.53	75.596	1	18534000			16429	7898;14776	11924	12013	16062	16062					0.015339701945549677
GAYKYIQELW	10	Unmodified	_GAYKYIQELW_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;nc|ENSG00000174748|P61313-2|RPL15	ENSG00000174748|ENST00000307839|RPL15;nc|ENSG00000174748|P61313-2|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-SECPEP	A375_MHC_IP_R2	2	636.2269897460938	2	635.826963	1269.63937	-0.55874	-0.00035526	0.067113	4.2672E-05	-0.49163	-0.00031259	635.8269185580784	100.06	0.7651	100.83	100.52	101.29	0.76278					43	14	4	0	0	0	0.022992	1	37908	37908		114.2	62.572	1	17925000			16430	7898;14776	11924	12013	16063	16063					0.015339701945549677
GCCCNCCCC	9	Unmodified	_GCCCNCCCC_					0	0	0			REV__ENSG00000147570|ENST00000276570|DNAJC5B	REV__ENSG00000147570|ENST00000276570|DNAJC5B	MSMS	A375_MHC_IP_R2	2	456.1348876953125	2	456.0769	910.139247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.964	1	23.594	23.094	24.094	0.63014								0	0	0	0.15486	1	7330	7330		0	0	1		+		16431	19595	11925	12014	16064	16064					-0.3194168520128642
GCCHSSGDCC	10	Unmodified	_GCCHSSGDCC_					0	0	0		ENSG00000187173|ENST00000368779|LCE2A	ENSG00000187173|ENST00000368779|LCE2A	ENSG00000187173|ENST00000368779|LCE2A	MSMS	A375_MHC_IP_R2	2	486.0172119140625	2	486.127347	970.240142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.01	1	83.749	83.249	84.249	0.73962								0	0	0	0.15642	1	31544	31544		0	0	1				16432	8810	11926	12015	16065	16065					-0.2461687063090494
GCCHSSGGC	9	Unmodified	_GCCHSSGGC_					0	0	0		ENSG00000186207|ENST00000334269|LCE5A;LCE5A|p.G107S|1|0.59|ENSG00000186207|chr1:152511853-152511853|G/A|missense_variant;ENSG00000187223|ENST00000368784|LCE2D;ENSG00000187180|ENST00000368783|LCE2C;ENSG00000159455|ENST00000368780|LCE2B	ENSG00000186207|ENST00000334269|LCE5A	ENSG00000186207|ENST00000334269|LCE5A	MULTI-SECPEP	A375_MHC_IP_R2	2	810.6370849609375	1	810.232754	809.225478	-0.8344	-0.00067606	3.4157	0.0027675	2.5813	0.0020915	810.2362823476157	125.17	0.5535	125.46	125.32	125.87	0.2951					15	10	2	0	0	0	0.81896	1	48607	48607		0	0	1	163260000			16433	8731	11927	12016	16066	16066					-0.1867657471673283
GCCPGECL	8	Unmodified	_GCCPGECL_					0	0	0			REV__ENST00000505643.5_1_4:1953834-1956331:+|nuORF	REV__ENST00000505643.5_1_4:1953834-1956331:+|nuORF	MSMS	A375_MHC_IP_R2	2	391.15289306640625	2	391.13751	780.260466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.359	1	88.092	87.592	88.592	0.73299								0	0	0	0.16876	1	33223	33223		0.79363	0	1		+		16434	17590	11928	12017	16067	16067					-0.13845331908794378
GCCYSCEEDSC	11	Unmodified	_GCCYSCEEDSC_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	MSMS	A375_MHC_IP_R1	1	400.1385192871094	3	400.110037	1197.30828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.418	1	95.418	94.918	95.918	0								0	0	0	0.1636	1	35071	35071		0	0	1				16435	3519	11929	12018	16068	16068					-0.2824809056155573
GCDDNYYIFC	10	Unmodified	_GCDDNYYIFC_					0	0	0		KDM5C|p.H350Y|1|0.9|ENSG00000126012|chrX:53214763-53214763|G/A|missense_variant	KDM5C|p.H350Y|1|0.9|ENSG00000126012|chrX:53214763-53214763|G/A|missense_variant	KDM5C|p.H350Y|1|0.9|ENSG00000126012|chrX:53214763-53214763|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	606.6866455078125	2	606.720449	1211.42635	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.524	1	51.524	51.024	52.024	0								0	0	0	0.15508	1	18291	18291		4.3292	0.38484	1				16436	14206	11930	12019	16069	16069					-0.17091026919092656
GCDEPHCHHC	10	Unmodified	_GCDEPHCHHC_					0	0	0			REV__ENST00000513513.1_1_12:63149525-63149597:+|nuORF	REV__ENST00000513513.1_1_12:63149525-63149597:+|nuORF	MSMS	A375_MHC_IP_R1	1	379.793701171875	3	379.793482	1136.35862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.622	1	17.622	17.122	18.122	0								0	0	0	0.15642	1	4143	4143		0	0	1		+		16437	25641	11931	12020	16070	16070					-0.2041075533086314
GCDQGQEDCCE	11	Unmodified	_GCDQGQEDCCE_					0	0	0		BMPER|p.G284D|1|0.37|ENSG00000164619|chr7:34055227-34055227|G/A|missense_variant	BMPER|p.G284D|1|0.37|ENSG00000164619|chr7:34055227-34055227|G/A|missense_variant	BMPER|p.G284D|1|0.37|ENSG00000164619|chr7:34055227-34055227|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	593.741455078125	2	593.675913	1185.33727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.2	1	111.94	111.44	112.44	0.73692								0	0	0	0.16358	1	41933	41933		0	0	1				16438	239	11932	12021	16071	16071					-0.24798229940915917
GCEHCECF	8	Unmodified	_GCEHCECF_					0	0	0			REV__ZNF699|p.S194F|1|0.28|ENSG00000196110|chr19:9296823-9296823|G/A|missense_variant	REV__ZNF699|p.S194F|1|0.28|ENSG00000196110|chr19:9296823-9296823|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	464.1343078613281	2	464.143323	926.272094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.735	1	42.735	42.235	43.235	0								0	0	0	0.16876	1	14822	14822		0.79363	0	1		+		16439	29051	11933	12022	16072	16072					-0.1939913488545244
GCEHCECF	8	Unmodified	_GCEHCECF_					0	0	0			REV__ZNF699|p.S194F|1|0.28|ENSG00000196110|chr19:9296823-9296823|G/A|missense_variant	REV__ZNF699|p.S194F|1|0.28|ENSG00000196110|chr19:9296823-9296823|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	464.1055603027344	2	464.143323	926.272094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.308	1	71.308	70.808	71.808	0								0	0	0	0.16876	1	25904	25904		0.79363	0	1		+		16440	29051	11933	12022	16073	16073					-0.1939913488545244
GCEHCECF	8	Unmodified	_GCEHCECF_					0	0	0			REV__ZNF699|p.S194F|1|0.28|ENSG00000196110|chr19:9296823-9296823|G/A|missense_variant	REV__ZNF699|p.S194F|1|0.28|ENSG00000196110|chr19:9296823-9296823|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	464.15869140625	2	464.143323	926.272094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.319	1	60.067	59.567	60.567	0.74714								0	0	0	0.16876	1	22450	22450		0.79363	0	1		+		16441	29051	11933	12022	16074	16074					-0.1939913488545244
GCGARGGG	8	Unmodified	_GCGARGGG_					0	0	0		ENST00000434316.6_1_13:114149826-114150153:+|nuORF	ENST00000434316.6_1_13:114149826-114150153:+|nuORF	ENST00000434316.6_1_13:114149826-114150153:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	635.0485229492188	1	634.272569	633.265293	-0.69328	-0.00043973	0.61589	0.00039064	-0.077395	-4.909E-05	634.2683134330954	91.035	0.15143	91.769	91.666	91.818	0.7345					4	2	2	0	0	0	0.972	1	34603	34603		0	0	1	372520			16442	11899	11934	12023	16075	16075					-0.06600943659486802
GCGCGGYK	8	Unmodified	_GCGCGGYK_					0	0	0		KRTAP19-6|p.R31K|1|0.37|ENSG00000186925|chr21:30541742-30541742|C/T|missense_variant	KRTAP19-6|p.R31K|1|0.37|ENSG00000186925|chr21:30541742-30541742|C/T|missense_variant	KRTAP19-6|p.R31K|1|0.37|ENSG00000186925|chr21:30541742-30541742|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	744.4602661132812	1	744.280357	743.27308	-0.72083	-0.0005365	3.0195	0.0022474	2.2987	0.0017109	744.2826328109169	124.9	0.30142	124.9	124.8	125.1	0					6	5	2	0	0	0	0.7779	1	47195	47195		2.5775	1.976	1	18373000			16443	14239	11935	12024	16076	16076					-0.10882552454245342
GCGGCQGF	8	Unmodified	_GCGGCQGF_					0	0	0			REV__ENSG00000087077|ENST00000200457|TRIP6	REV__ENSG00000087077|ENST00000200457|TRIP6	MSMS	A375_MHC_IP_R1	1	364.6327209472656	2	364.628166	727.24178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.463	1	57.463	56.963	57.963	0								0	0	0	0.16876	1	20615	20615		0.79363	0.79363	1		+		16444	16863	11936	12025	16077	16077					-0.13275125488326012
GCGRGGDD	8	Unmodified	_GCGRGGDD_					0	0	0		nc|ENSG00000213397|Q99871-2|HAUS7;nc|ENSG00000213397|Q99871-3|HAUS7;ENSG00000213397|ENST00000370211|HAUS7	nc|ENSG00000213397|Q99871-2|HAUS7	nc|ENSG00000213397|Q99871-2|HAUS7	MSMS	A375_MHC_IP_R2	2	368.7044677734375	2	368.637577	735.260601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.099	1	29.797	29.297	30.297	0.69872								0	0	0	0.16876	1	10130	10130		2.3027	0	1				16445	14894	11937	12026	16078	16078					-0.11761872592933287
GCQGWGHD	8	Unmodified	_GCQGWGHD_					0	0	0			REV__PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant	REV__PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	858.9049072265625	1	859.315162	858.307886	-0.66211	-0.00056896	-0.0016287	-1.3996E-06	-0.66374	-0.00057036	859.3149707760307	144.74	0.17188	144.74	144.65	144.82	0					10	3	4	0	0	0	0.972	1	55482	55482		0.69038	0	1	29709000	+		16446	27863	11938	12027	16079	16079					-0.12693593321921526
GDACDDDMDG	10	Unmodified	_GDACDDDMDG_					0	0	0		ENSG00000113296|ENST00000350881|THBS4	ENSG00000113296|ENST00000350881|THBS4	ENSG00000113296|ENST00000350881|THBS4	MULTI-SECPEP	A375_MHC_IP_R2	2	506.9858093261719	2	507.144772	1012.27499	-0.77659	-0.00039384	-3.2994	-0.0016733	-4.076	-0.0020671	507.64497708222973	82.196	0.25397	82.939	82.839	83.093	0.74293					6	4	2	0	0	0	0.94897	1	31206	31206		0.35063	0	1	3331700			16447	3138	11939	12028	16080	16080					-0.23065633017620257
GDAENVASYDC	11	Unmodified	_GDAENVASYDC_					0	0	0		ENST00000455209.5_1_22:38765323-38794807:-|nuORF	ENST00000455209.5_1_22:38765323-38794807:-|nuORF	ENST00000455209.5_1_22:38765323-38794807:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	572.6163940429688	2	572.216585	1142.41862	-0.56002	-0.00032045	0.1368	7.8279E-05	-0.42322	-0.00024217	572.2165592827149	26.114	0.75894	26.114	25.765	26.524	0					35	14	3	0	0	0	0.56199	1	7681	7681		26.268	12.653	1	13267000			16448	12114	11940	12029	16081	16081					-0.14689462915021068
GDAENVASYDC	11	Unmodified	_GDAENVASYDC_					0	0	0		ENST00000455209.5_1_22:38765323-38794807:-|nuORF	ENST00000455209.5_1_22:38765323-38794807:-|nuORF	ENST00000455209.5_1_22:38765323-38794807:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	572.6166381835938	2	572.216585	1142.41862	-0.2772	-0.00015862	2.5328	0.0014493	2.2556	0.0012907	572.2165923166569	37.077	0.55568	37.077	36.745	37.301	0					18	10	3	0	0	0	0.7039	1	12527	12527		15.248	3.7538	1	2715800			16449	12114	11940	12029	16082	16082					-0.14689462915021068
GDAENVASYDC	11	Unmodified	_GDAENVASYDC_					0	0	0		ENST00000455209.5_1_22:38765323-38794807:-|nuORF	ENST00000455209.5_1_22:38765323-38794807:-|nuORF	ENST00000455209.5_1_22:38765323-38794807:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	573.2184448242188	2	572.216585	1142.41862	-0.7177	-0.00041068	-0.045408	-2.5983E-05	-0.76311	-0.00043666	572.216528236637	25.616	0.86411	26.276	25.992	26.857	0.65992					35	16	3	0	0	0	0.62292	1	8697	8697		21.537	5.3879	1	11418000			16450	12114	11940	12029	16083	16083					-0.14689462915021068
GDAENVASYDC	11	Unmodified	_GDAENVASYDC_					0	0	0		ENST00000455209.5_1_22:38765323-38794807:-|nuORF	ENST00000455209.5_1_22:38765323-38794807:-|nuORF	ENST00000455209.5_1_22:38765323-38794807:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	572.19580078125	2	572.216585	1142.41862	-0.52197	-0.00029868	2.9718	0.0017005	2.4499	0.0014019	572.2164042300587	36.437	0.71267	37.208	36.749	37.461	0.7709					34	13	4	0	0	0	0.63737	1	13312	13312		20.415	5.1661	1	3162300			16451	12114	11940	12029	16084	16084					-0.14689462915021068
GDAFTYRVVY	10	Unmodified	_GDAFTYRVVY_					0	0	0			REV__TNN|p.S479F|1|0.35|ENSG00000120332|chr1:175094101-175094101|C/T|missense_variant	REV__TNN|p.S479F|1|0.35|ENSG00000120332|chr1:175094101-175094101|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	596.1948852539062	2	595.795663	1189.57677	-0.38376	-0.00022864	-0.0053219	-3.1708E-06	-0.38908	-0.00023181	595.7955554569398	73.239	1.0641	73.239	72.779	73.843	0					61	20	5	0	0	0	0.77204	1	26593	26593		27.629	16.805	1	92998000	+		16452	28144	11941	12030	16085	16085					-0.010431758736103802
GDAFTYRVVY	10	Unmodified	_GDAFTYRVVY_					0	0	0			REV__TNN|p.S479F|1|0.35|ENSG00000120332|chr1:175094101-175094101|C/T|missense_variant	REV__TNN|p.S479F|1|0.35|ENSG00000120332|chr1:175094101-175094101|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	596.1947631835938	2	595.795663	1189.57677	-0.69464	-0.00041386	0.17079	0.00010175	-0.52385	-0.00031211	595.7956981776784	72.517	1.115	73.252	72.721	73.836	0.73541					62	21	5	0	0	0	0.83355	1	27442	27442		22.736	17.004	1	92775000	+		16453	28144	11941	12030	16086	16086					-0.010431758736103802
GDAGKKVRAF	10	Unmodified	_GDAGKKVRAF_					0	0	0			REV__nc|ENSG00000065609|O60641-3|SNAP91	REV__nc|ENSG00000065609|O60641-3|SNAP91	MULTI-SECPEP	A375_MHC_IP_R2	2	525.1083374023438	2	524.79854	1047.58253	-0.76304	-0.00040044	-2.3004	-0.0012072	-3.0634	-0.0016077	524.797311438486	23.874	0.30584	24.505	24.283	24.588	0.63014					9	5	2	0	0	0	0.85226	1	7772	7772		10.074	2.1638	1	1496100	+		16454	16502	11942	12031	16087	16087					0.060639674286903755
GDALGMHKLIH	11	Unmodified	_GDALGMHKLIH_					0	0	0			REV__SCN4A|p.N895K|1|0.22|ENSG00000007314|chr17:63951592-63951592|G/T|missense_variant	REV__SCN4A|p.N895K|1|0.22|ENSG00000007314|chr17:63951592-63951592|G/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	596.654052734375	2	596.318783	1190.62301	-0.46083	-0.0002748	3.9314	0.0023444	3.4706	0.0020696	596.8235599805892	77.126	0.20325	77.126	76.981	77.184	0					5	3	2	0	0	0	0.99507	1	28116	28116		7.609	0.88579	1	675270	+		16455	27921	11943	12032	16088	16088					0.0353256575681371
GDDCNCPCDMD	11	Unmodified	_GDDCNCPCDMD_					0	0	0		ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC;nc|ENSG00000135272|Q9P1T7-1|MDFIC	ENST00000431629.5_2_7:114654517-114655986:+|nuORF	ENST00000431629.5_2_7:114654517-114655986:+|nuORF	MSMS	A375_MHC_IP_R2	2	594.3944702148438	2	594.159041	1186.30353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.01	1	120.55	120.05	121.05	0.5321								0	0	0	0.1636	1	45750	45750		0	0	1				16456	4663	11944	12033	16089	16089					-0.2821697470435538
GDDDDQGS	8	Unmodified	_GDDDDQGS_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-3|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MSMS	A375_MHC_IP_R2	2	404.6328125	2	404.633212	807.25187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.95	1	119.56	119.06	120.06	0.60909								0	0	0	0.16876	1	45237	45237		2.3027	0	1				16457	2996	11945	12034	16090	16090					-0.15946567748414964
GDDDEDDECD	10	Unmodified	_GDDDEDDECD_					0	0	0			REV__ENSG00000173253|ENST00000358146|DMRT2	REV__ENSG00000173253|ENST00000358146|DMRT2	MSMS	A375_MHC_IP_R2	2	564.1920166015625	2	564.151305	1126.28806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.096	1	95.846	95.346	96.346	0.75045								0	0	0	0.15642	1	36129	36129		0	0	1		+		16458	21208	11946	12035	16091	16091					-0.2700352342453698
GDDGCCCF	8	Unmodified	_GDDGCCCF_					0	0	0		ENST00000174618.4_1_17:2288065-2288200:-|nuORF	ENST00000174618.4_1_17:2288065-2288200:-|nuORF	ENST00000174618.4_1_17:2288065-2288200:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	820.6105346679688	1	819.210622	818.203346	-0.577	-0.00047268	-0.30234	-0.00024768	-0.87934	-0.00072037	819.2114756259544	15.716	2.6076	15.716	14.724	17.331	0					554	377	2	0	0	0	0.77861	8	3510	3510;3516;3518;3543;3562;3648;3653;3728		0	0	1	720490			16459	10070	11947	12036	16092;16093;16094;16095;16096;16097;16098;16099	16092					-0.2130279918517317
GDDGGGDDNTF	11	Unmodified	_GDDGGGDDNTF_					0	0	0		ENSG00000165091|ENST00000297784|TMC1	ENSG00000165091|ENST00000297784|TMC1	ENSG00000165091|ENST00000297784|TMC1	MSMS	A375_MHC_IP_R2	2	535.136474609375	2	535.188882	1068.36321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.167	1	66.905	66.405	67.405	0.73811								0	0	0	0.16249	1	25078	25078		5.7319	1.4026	1				16460	6910	11948	12037	16100	16100					-0.1682355311113497
GDDTCVGCWHS	11	Unmodified	_GDDTCVGCWHS_					0	0	0		ENST00000414282.5_1_9:139620811-139622504:-|nuORF	ENST00000414282.5_1_9:139620811-139622504:-|nuORF	ENST00000414282.5_1_9:139620811-139622504:-|nuORF	MSMS	A375_MHC_IP_R1	1	589.8663330078125	2	590.213323	1178.41209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.51	1	74.51	74.01	75.01	0								0	0	0	0.16302	1	27139	27139		2.9952	0.41776	1				16461	11664	11949	12038	16101	16101					-0.16997679347377925
GDEDKRITY	9	Unmodified	_GDEDKRITY_					0	0	0		nc|ENSG00000164038|Q86UD5-2|SLC9B2;ENSG00000164038|ENST00000394785|SLC9B2;ENST00000505838.1_1_4:103986824-103988707:-|nuORF	nc|ENSG00000164038|Q86UD5-2|SLC9B2	nc|ENSG00000164038|Q86UD5-2|SLC9B2	MSMS	A375_MHC_IP_R1	1	548.66357421875	2	548.767103	1095.51965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.4	1	112.4	111.9	112.9	0								0	0	0	0.1499	1	41196	41196		21.747	2.4897	1				16462	6761	11950	12039	16102	16102					-0.024286431500058825
GDEFSGSFLY	10	Unmodified	_GDEFSGSFLY_					0	0	0			REV__ENSG00000133424|ENST00000397394|LARGE1	REV__ENSG00000133424|ENST00000397394|LARGE1	MULTI-MSMS	A375_MHC_IP_R2	2	561.1762084960938	2	561.242929	1120.47131	-0.60021	-0.00033686	-2.4269	-0.0013621	-3.0272	-0.001699	561.7416802592778	76.491	0.50761	77.231	76.994	77.501	0.74052					15	9	2	0	0	0	0.71466	1	29093	29093		5.7319	0.97584	1	943980	+		16463	18719	11951	12040	16103	16103					-0.08411136789868578
GDEFSGSFLY	10	Unmodified	_GDEFSGSFLY_					0	0	0			REV__ENSG00000133424|ENST00000397394|LARGE1	REV__ENSG00000133424|ENST00000397394|LARGE1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	561.242929	1120.47131	-0.60021	-0.00033686	-2.4269	-0.0013621	-3.0272	-0.001699	561.7416802592778	76.491	0.50761	77.231	76.994	77.501	0.74052	0.061696	0.00026267	NaN	5.7319	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	943980	+		16464	18719	11951	12040							-0.08411136789868578
GDENNDQDA	9	Unmodified	_GDENNDQDA_					0	0	0		ENST00000409179.2_1_2:128145366-128145498:-|nuORF	ENST00000409179.2_1_2:128145366-128145498:-|nuORF	ENST00000409179.2_1_2:128145366-128145498:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	977.7442626953125	1	977.344273	976.336997	-0.27402	-0.00026781	-0.85302	-0.00083369	-1.127	-0.0011015	977.3435517835572	41.181	0.45567	41.955	41.743	42.198	0.77451					14	8	2	0	0	0	0.81254	1	15257	15257		0.52476	0	1	3983100			16465	11624	11952	12041	16104	16104					-0.15211822282617504
GDENNDQDA	9	Unmodified	_GDENNDQDA_					0	0	0		ENST00000409179.2_1_2:128145366-128145498:-|nuORF	ENST00000409179.2_1_2:128145366-128145498:-|nuORF	ENST00000409179.2_1_2:128145366-128145498:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	977.344273	976.336997	-0.0063226	-6.1794E-06	-0.88345	-0.00086343	-0.88977	-0.00086961	977.3438700420302	41.854	0.3582	41.854	41.674	42.032	0	-0.050492	-2.024E-05	NaN	0.52476	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2780500			16466	11624	11952	12041							-0.15211822282617504
GDFGGNLHIW	10	Unmodified	_GDFGGNLHIW_					0	0	0		ENSG00000243667|ENST00000295121|DNAAF10;ENST00000492039.6_1_2:68352461-68384592:-|nuORF;nc|ENSG00000243667|Q96MX6-2|DNAAF10	ENSG00000243667|ENST00000295121|DNAAF10	ENSG00000243667|ENST00000295121|DNAAF10	MULTI-MSMS	A375_MHC_IP_R1	1	558.66650390625	2	558.267073	1114.51959	-0.56523	-0.00031555	-0.19189	-0.00010713	-0.75712	-0.00042268	558.2670148800984	95.742	0.60405	95.742	95.465	96.069	0					15	11	2	0	0	0	0.25271	1	35223	35223		43.858	32.218	1	1485400			16467	9811	11953	12042	16105	16105					-0.03308598359330972
GDFGGNLHIW	10	Unmodified	_GDFGGNLHIW_					0	0	0		ENSG00000243667|ENST00000295121|DNAAF10;ENST00000492039.6_1_2:68352461-68384592:-|nuORF;nc|ENSG00000243667|Q96MX6-2|DNAAF10	ENSG00000243667|ENST00000295121|DNAAF10	ENSG00000243667|ENST00000295121|DNAAF10	MULTI-SECPEP	A375_MHC_IP_R2	2	558.6672973632812	2	558.267073	1114.51959	-0.45743	-0.00025537	0.0089085	4.9733E-06	-0.44852	-0.00025039	558.2669917569954	94.993	0.50688	95.743	95.432	95.939	0.75045					15	9	2	0	0	0	0.63381	1	36112	36112		38.176	28.102	1	1484800			16468	9811	11953	12042	16106	16106					-0.03308598359330972
GDGEVPSFQV	10	Unmodified	_GDGEVPSFQV_					0	0	0		ENSG00000204624|ENST00000294484|DISP3;nc|ENSG00000204624|Q9P2K9-2|DISP3	ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	MULTI-SECPEP	A375_MHC_IP_R1	1	517.6690673828125	2	517.743096	1033.47164	-0.39406	-0.00020402	0.035824	1.8548E-05	-0.35823	-0.00018547	517.7430715880693	43.495	0.71362	43.495	42.993	43.706	0					22	13	2	0	0	0	0.8125	1	15056	15056		24.021	19.691	1	1720000			16469	9469	11954	12043	16107	16107					-0.04375717070047358
GDGEVPSFQV	10	Unmodified	_GDGEVPSFQV_					0	0	0		ENSG00000204624|ENST00000294484|DISP3;nc|ENSG00000204624|Q9P2K9-2|DISP3	ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	MSMS	A375_MHC_IP_R2	2	517.6691284179688	2	517.743096	1033.47164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.534	1	43.306	42.806	43.806	0.7724								0	0	0	0.14673	1	15824	15824		24.021	2.2739	1				16470	9469	11954	12043	16108	16108					-0.04375717070047358
GDGGCYGD	8	Unmodified	_GDGGCYGD_					0	0	0		nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	MSMS	A375_MHC_IP_R1	1	371.729736328125	2	372.118686	742.222819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.493	1	16.493	15.993	16.993	0								0	0	0	0.16876	1	3844	3844		0	0	1				16471	6175	11955	12044	16109	16109					-0.1586038357839925
GDGGCYGD	8	Unmodified	_GDGGCYGD_					0	0	0		nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	MSMS	A375_MHC_IP_R1	1	372.1162414550781	2	372.118686	742.222819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.774	1	78.774	78.274	79.274	0								0	0	0	0.16876	1	28748	28748		0	0	1				16472	6175	11955	12044	16110	16110					-0.1586038357839925
GDGGCYGD	8	Unmodified	_GDGGCYGD_					0	0	0		nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	MSMS	A375_MHC_IP_R2	2	371.7290954589844	2	372.118686	742.222819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.3758	1	0.84624	0.34624	1.3462	0.47044								0	0	0	0.16876	1	128	128		0	0	1				16473	6175	11955	12044	16111	16111					-0.1586038357839925
GDGLGGPA	8	Unmodified	_GDGLGGPA_					0	0	0			REV__ENSG00000128040|ENST00000506738|SPINK2	REV__ENSG00000128040|ENST00000506738|SPINK2	MULTI-SECPEP	A375_MHC_IP_R1	1	643.17822265625	1	643.304581	642.297304	-0.35868	-0.00023074	1.3266	0.00085344	0.96796	0.0006227	643.3078815954336	68.886	0.45503	68.886	68.666	69.121	0					10	8	2	0	0	0	0.972	1	24940	24940		0.69038	0	1	696670	+		16474	18441	11956	12045	16112	16112					-0.03815252704714567
GDGLISASSWA	11	Unmodified	_GDGLISASSWA_					0	0	0			REV__ENST00000534781.1_1_8:146015928-146016186:-|nuORF	REV__ENST00000534781.1_1_8:146015928-146016186:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	532.6558837890625	2	532.256371	1062.49819	-0.63764	-0.00033939	-0.45773	-0.00024363	-1.0954	-0.00058302	532.2560176495901	104.77	2.2396	105.53	105.16	107.4	0.76308					165	43	6	0	0	0	0.72649	1	39952	39952		12.241	0	1	93003000	+		16475	25831	11957	12046	16113	16113					-0.030560281787074928
GDGPHGSC	8	Unmodified	_GDGPHGSC_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-SECPEP	A375_MHC_IP_R2	2	728.7843017578125	1	729.262064	728.254787	-0.76537	-0.00055815	-0.29276	-0.0002135	-1.0581	-0.00077165	729.2623392608779	103.55	2.1349	104.32	103.43	105.57	0.76428					56	41	2	0	0	0	0.972	1	39290	39290		0	0	1	12123000			16476	1301	11958	12047	16114	16114					-0.12020971104595901
GDGPHGSC	8	Unmodified	_GDGPHGSC_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MATCH	A375_MHC_IP_R1	1		1	729.262064	728.254787	-0.52206	-0.00038072	-0.57613	-0.00042015	-1.0982	-0.00080087	729.2624965823004	103.97	1.6238	103.97	103.57	105.2	0	-0.1726	-0.00013657	NaN	0	44	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10257000			16477	1301	11958	12047							-0.12020971104595901
GDGSYNYSV	9	Unmodified	_GDGSYNYSV_					0	0	0			REV__ENSG00000196782|ENST00000509479|MAML3	REV__ENSG00000196782|ENST00000509479|MAML3	MULTI-MSMS	A375_MHC_IP_R2	2	481.5990295410156	2	481.198522	960.38249	-0.82171	-0.00039541	0.57037	0.00027446	-0.25135	-0.00012095	481.19945317481614	49.865	0.40931	50.619	50.394	50.804	0.75406					17	7	3	0	0	0	0.41409	1	18755	18755		24.021	7.0783	1	1987400	+		16478	22231	11959	12048	16115	16115					-0.09928552029566617
GDINKFTDRSY	11	Unmodified	_GDINKFTDRSY_					0	0	0			REV__tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	REV__tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	659.2186889648438	2	658.317491	1314.62043	-0.96501	-0.00063529	0.20019	0.00013179	-0.76482	-0.00050349	658.3174168621492	62.616	0.50433	63.359	63.13	63.634	0.74263					21	9	3	0	0	0	0.71476	1	23724	23724		14.405	1.3629	1	6513300	+		16479	28474	11960	12049	16116	16116					-0.02429611167144685
GDITSFLLSV	10	Unmodified	_GDITSFLLSV_					0	0	0		ENSG00000080910|ENST00000367415|CFHR2	ENSG00000080910|ENST00000367415|CFHR2	ENSG00000080910|ENST00000367415|CFHR2	MULTI-SECPEP	A375_MHC_IP_R1	1	1051.089599609375	1	1051.567	1050.55973	0.10968	0.00011534	1.0542	0.0011086	1.1639	0.0012239	1051.5692332823548	119.13	0.3529	119.13	118.93	119.28	0					8	6	2	0	0	0	0.42954	1	43909	43909		49.933	11.959	1	6019500			16480	1725	11961	12050	16117	16117					0.03646903520575506
GDKLIEKLII	10	Unmodified	_GDKLIEKLII_					0	0	0		ENSG00000117751|ENST00000311772|PPP1R8;ENST00000236412.11_1_1:28157683-28169749:+|nuORF	ENSG00000117751|ENST00000311772|PPP1R8	ENSG00000117751|ENST00000311772|PPP1R8	MULTI-MSMS	A375_MHC_IP_R1	1	381.2640686035156	3	381.244547	1140.71181	0.15481	5.9021E-05	1.0926	0.00041655	1.2474	0.00047557	381.24490503704396	84.336	0.50476	84.336	84.041	84.545	0					18	9	2	0	0	0	0.6614	1	30916	30916		16.275	1.3174	1	2521800			16481	3511	11962	12051	16118	16118					0.1470830426815155
GDMFNKIKEV	10	Unmodified	_GDMFNKIKEV_					0	0	0			REV__EXOC5|p.S593F|1|0.58|ENSG00000070367|chr14:57209727-57209727|G/A|missense_variant	REV__EXOC5|p.S593F|1|0.58|ENSG00000070367|chr14:57209727-57209727|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	394.157958984375	3	394.205875	1179.59579	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.912	1	44.912	44.412	45.412	0								0	0	0	0.14179	1	15690	15690		19.626	3.8873	1		+		16482	26598	11963	12052	16119	16119					0.01318037425789953
GDRDDGRG	8	Unmodified	_GDRDDGRG_					0	0	0		ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D	ENSG00000116604|ENST00000348159|MEF2D	ENSG00000116604|ENST00000348159|MEF2D	MULTI-SECPEP	A375_MHC_IP_R1	1	846.9055786132812	1	847.365283	846.358007	-0.68512	-0.00058055	-1.2987	-0.0011005	-1.9839	-0.001681	847.3641066413545	144.5	0.1273	144.5	144.46	144.59	0					5	3	2	0	0	0	0.972	1	55401	55401		2.0598	2.0598	1	348130			16483	3410	11964	12053	16120	16120					-0.07131767392422717
GDRPPPSL	8	Unmodified	_GDRPPPSL_					0	0	0			REV__ENSG00000145743|ENST00000542267|FBXL17	REV__ENSG00000145743|ENST00000542267|FBXL17	MULTI-MSMS	A375_MHC_IP_R1	1	420.17938232421875	2	419.72451	837.434466	0.1376	5.7755E-05	0.70151	0.00029444	0.83911	0.00035219	419.72385965674823	103.67	4.0067	103.67	100.53	104.54	0					126	78	3	0	0	0	0.77741	1	38111	38111		4.3292	1.44	1	3322700	+		16484	19490	11965	12054	16121	16121					0.009246561748454951
GDWDLPLPVQY	11	Unmodified	_GDWDLPLPVQY_					0	0	0			REV__PGAP2|p.R10W|1|0.53|ENSG00000148985|chr11:3811287-3811287|C/T|missense_variant	REV__PGAP2|p.R10W|1|0.53|ENSG00000148985|chr11:3811287-3811287|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	434.8971252441406	3	434.883677	1301.6292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.221	1	31.221	30.721	31.721	0								0	0	0	0.16269	1	9984	9984		4.7159	0.30977	1		+		16485	27768	11966	12055	16122	16122					-0.009546375306626942
GDWLIFDNMG	10	Unmodified	_GDWLIFDNMG_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	A375_MHC_IP_R1	1	584.6585083007812	2	584.260599	1166.50665	-0.1196	-6.9877E-05	-2.2321	-0.0013041	-2.3517	-0.001374	584.2585089415154	79.135	0.50877	79.135	78.909	79.418	0					21	9	3	0	0	0	0.67512	1	28907	28907		15.248	0.41021	1	3996200			16486	6126	11967	12056	16123	16123					-0.06994797533752717
GEAALGGGRGW	11	Unmodified	_GEAALGGGRGW_					0	0	0		ENST00000569441.5_1_16:733170-733950:-|nuORF;ENST00000568689.5_1_16:733170-734340:-|nuORF	ENST00000569441.5_1_16:733170-733950:-|nuORF	ENST00000569441.5_1_16:733170-733950:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	515.634765625	2	515.756872	1029.49919	-0.75975	-0.00039185	1.1473	0.00059175	0.3876	0.00019991	516.258963513151	41.839	0.25595	42.614	42.453	42.709	0.77451					6	4	2	0	0	0	0.90673	1	15478	15478		18.373	0	1	1313100			16487	13582	11968	12057	16124	16124					-0.014377690191395232
GEAALNDPKMY	11	Unmodified	_GEAALNDPKMY_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-SECPEP	A375_MHC_IP_R1	1	605.1843872070312	2	604.784438	1207.55432	0.023232	1.405E-05	3.9949	0.002416	4.0181	0.0024301	604.7847405256249	44.503	0.56076	44.503	44.216	44.777	0					24	10	4	0	0	0	0.041592	1	15523	15523		74.772	38.645	1	3543600			16488	1268	11969	12058	16125	16125					-0.041151433335471665
GEAALNDPKMY	11	Unmodified	_GEAALNDPKMY_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-SECPEP	A375_MHC_IP_R2	2	605.1843872070312	2	604.784438	1207.55432	-0.23341	-0.00014116	3.2407	0.0019599	3.0073	0.0018188	604.784415282572	43.799	0.75661	44.568	44.076	44.833	0.76909					31	14	4	0	0	0	0.16078	1	16337	16337		62.78	35.896	1	3902500			16489	1268	11969	12058	16126	16126					-0.041151433335471665
GEAALNDPKMY	11	Oxidation (M)	_GEAALNDPKM(Oxidation (M))Y_		GEAALNDPKM(1)Y		GEAALNDPKM(63)Y	0	0	1		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-SECPEP	A375_MHC_IP_R1	1	613.1527709960938	2	612.781896	1223.54924	-0.65487	-0.00040129	0.11885	7.2826E-05	-0.53603	-0.00032847	612.7818699220213	30.609	0.50591	30.609	30.351	30.857	0					20	9	3	0	0	0	0.1459	1	9774	9774		62.869	36.6	1	3301800			16490	1268	11969	12059	16127	16127		27			-0.053594471961559975
GEAALNDPKMY	11	Oxidation (M)	_GEAALNDPKM(Oxidation (M))Y_		GEAALNDPKM(1)Y		GEAALNDPKM(85)Y	0	0	1		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-SECPEP	A375_MHC_IP_R2	2	613.1810913085938	2	612.781896	1223.54924	-0.78549	-0.00048134	0.16226	9.943E-05	-0.62324	-0.00038191	612.7818630867646	30.035	0.55881	30.741	30.442	31.001	0.70651					16	10	2	0	0	0	0.042795	1	10531	10531		84.522	60.732	1	3277800			16491	1268	11969	12059	16128	16128		27			-0.053594471961559975
GEADVPFYY	9	Unmodified	_GEADVPFYY_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	A375_MHC_IP_R1	1	531.1341552734375	2	530.73474	1059.45493	-0.58234	-0.00030907	0.063985	3.3959E-05	-0.51836	-0.00027511	530.7345961021687	100.05	0.80942	100.05	99.723	100.53	0					36	15	3	0	0	0	0.0096264	1	36715	36715		109.63	69.181	1	10384000			16492	4815	11970	12060	16129	16129					-0.07242217955990782
GEADVPFYY	9	Unmodified	_GEADVPFYY_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	A375_MHC_IP_R2	2	531.1340942382812	2	530.73474	1059.45493	-0.41967	-0.00022273	-0.57235	-0.00030377	-0.99202	-0.0005265	530.7344358704182	99.38	0.86445	100.14	99.758	100.62	0.75977					41	16	4	0	0	0	0.0096264	2	37647	37647;37685		109.63	73.585	1	14115000			16493	4815	11970	12060	16130;16131	16130					-0.07242217955990782
GEADVPFYYA	10	Unmodified	_GEADVPFYYA_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	A375_MHC_IP_R1	1	1131.4307861328125	1	1131.49932	1130.49204	0.061565	6.9661E-05	0.27808	0.00031465	0.33965	0.00038431	1131.4994229256968	100.15	0.50576	100.15	99.875	100.38	0					14	9	2	0	0	0	0.02032	1	36818	36818		85.272	63.735	1	2729900			16494	4815	11971	12061	16132	16132					-0.0679854641023212
GEADVPFYYA	10	Unmodified	_GEADVPFYYA_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	A375_MHC_IP_R2	2	1131.9007568359375	1	1131.49932	1130.49204	0.35703	0.00040397	-0.10794	-0.00012214	0.24908	0.00028184	1131.4991946767811	99.482	0.55984	100.24	99.964	100.52	0.76278					15	10	2	0	0	0	0.55789	1	37810	37810		24.021	9.4389	1	2540000			16495	4815	11971	12061	16133	16133					-0.0679854641023212
GEAETITTHY	10	Unmodified	_GEAETITTHY_					0	0	0		nc|ENSG00000100196|O43731-2|KDELR3;ENSG00000100196|ENST00000216014|KDELR3;ENSG00000136240|ENST00000258739|KDELR2	nc|ENSG00000100196|O43731-2|KDELR3	nc|ENSG00000100196|O43731-2|KDELR3	MSMS	A375_MHC_IP_R2	2	561.1583251953125	2	561.259111	1120.50367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.672	1	33.409	32.909	33.909	0.73692								0	0	0	0.12273	1	11650	11650		38.176	18.814	1				16496	2130	11972	12062	16134	16134					-0.051763493868975274
GEAETITTHY	10	Unmodified	_GEAETITTHY_					0	0	0		nc|ENSG00000100196|O43731-2|KDELR3;ENSG00000100196|ENST00000216014|KDELR3;ENSG00000136240|ENST00000258739|KDELR2	nc|ENSG00000100196|O43731-2|KDELR3	nc|ENSG00000100196|O43731-2|KDELR3	MSMS	A375_MHC_IP_R2	2	561.174560546875	2	561.259111	1120.50367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.918	1	33.655	33.155	34.155	0.73692								0	0	0	0.15038	1	11754	11754		17.113	5.9984	1				16497	2130	11972	12062	16135	16135					-0.051763493868975274
GEAEVRTLL	9	Unmodified	_GEAEVRTLL_					0	0	0		ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81	ENSG00000167716|ENST00000409644|WDR81	ENSG00000167716|ENST00000409644|WDR81	MULTI-SECPEP	A375_MHC_IP_R2	2	494.6764221191406	2	494.277106	986.53966	-0.64202	-0.00031734	0.40966	0.00020249	-0.23236	-0.00011485	494.2771260522573	54.85	1.6245	55.601	54.967	56.591	0.75075					70	31	4	0	0	0	0.36673	1	20657	20657		38.615	7.9782	1	29641000			16498	7216	11973	12063	16136	16136					0.045851525806369864
GEAGDTVQF	9	Unmodified	_GEAGDTVQF_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-SECPEP	A375_MHC_IP_R2	2	462.690673828125	2	462.208889	922.403226	-0.64309	-0.00029724	0.77068	0.00035621	0.12759	5.8973E-05	462.20946681612253	54.984	0.66317	55.735	55.523	56.187	0.75075					15	12	2	0	0	0	0.43707	1	20756	20756		15.847	3.3156	1	1387400			16499	4022	11974	12064	16137	16137					-0.061079616498886935
GEAGDTVQF	9	Unmodified	_GEAGDTVQF_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MATCH	A375_MHC_IP_R1	1		2	462.208889	922.403226	-0.17427	-8.0547E-05	-0.6489	-0.00029993	-0.82317	-0.00038048	462.20867837648433	55.815	0.40791	55.815	55.533	55.941	0	0.040215	-0.00022429	NaN	15.847	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1010600			16500	4022	11974	12064							-0.061079616498886935
GEAGPHSPPV	10	Unmodified	_GEAGPHSPPV_					0	0	0		ENST00000368408.3_1_1:155051524-155058895:+|nuORF	ENST00000368408.3_1_1:155051524-155058895:+|nuORF	ENST00000368408.3_1_1:155051524-155058895:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	474.15301513671875	2	474.232699	946.450845	-0.47782	-0.0002266	-0.13734	-6.5131E-05	-0.61516	-0.00029173	474.232735351181	61.695	1.842	61.695	61.331	63.173	0					86	35	5	0	0	0	0.69306	1	22417	22417		13.906	0	1	39418000			16501	11114	11975	12065	16138	16138					-0.0245226265905103
GEALALGSGW	10	Unmodified	_GEALALGSGW_					0	0	0		ENSG00000198585|ENST00000521288|NUDT16;nc|ENSG00000198585|Q96DE0-4|NUDT16	ENSG00000198585|ENST00000521288|NUDT16	ENSG00000198585|ENST00000521288|NUDT16	MULTI-MSMS	A375_MHC_IP_R1	1	960.519775390625	1	960.478522	959.471246	0.12744	0.0001224	-0.93571	-0.00089873	-0.80828	-0.00077633	960.4781507197388	102.41	0.40237	102.41	102.2	102.61	0					10	7	2	0	0	0	0.70012	1	37567	37567		12.241	2.1667	1	1741200			16502	9286	11976	12066	16139	16139					-0.010110919992371237
GEALQYILTV	10	Unmodified	_GEALQYILTV_					0	0	0			REV__ENSG00000010292|ENST00000315579|NCAPD2	REV__ENSG00000010292|ENST00000315579|NCAPD2	MULTI-SECPEP	A375_MHC_IP_R2	2	554.1282958984375	2	553.808239	1105.60193	-0.76678	-0.00042465	1.2631	0.00069951	0.49631	0.00027486	553.8080633773039	75.939	0.45792	76.68	76.334	76.792	0.74052					12	8	2	0	0	0	0.88918	1	28762	28762		13.042	0	1	1019900	+		16503	16192	11977	12067	16140	16140					0.05334878928942999
GEALVRHDEF	10	Unmodified	_GEALVRHDEF_					0	0	0		nc|ENSG00000128595|O43852-6|CALU;nc|ENSG00000128595|O43852-2|CALU;ENSG00000128595|ENST00000249364|CALU;nc|ENSG00000128595|O43852-4|CALU;nc|ENSG00000128595|O43852-3|CALU;nc|ENSG00000128595|O43852-9|CALU;nc|ENSG00000128595|O43852-15|CALU;nc|ENSG00000128595|O43852-8|CALU;nc|ENSG00000128595|O43852-5|CALU	nc|ENSG00000128595|O43852-6|CALU	nc|ENSG00000128595|O43852-6|CALU	MULTI-MSMS	A375_MHC_IP_R1	1	391.5964050292969	3	391.528005	1171.56219	-0.048014	-1.8799E-05	0.45606	0.00017856	0.40804	0.00015976	391.52831054029133	32.883	0.40511	32.883	32.634	33.04	0					12	7	2	0	0	0	0.53147	1	10652	10652		25.997	8.9488	1	4178700			16504	4151	11978	12068	16141	16141					-0.016732480217797274
GEALVRHDEF	10	Unmodified	_GEALVRHDEF_					0	0	0		nc|ENSG00000128595|O43852-6|CALU;nc|ENSG00000128595|O43852-2|CALU;ENSG00000128595|ENST00000249364|CALU;nc|ENSG00000128595|O43852-4|CALU;nc|ENSG00000128595|O43852-3|CALU;nc|ENSG00000128595|O43852-9|CALU;nc|ENSG00000128595|O43852-15|CALU;nc|ENSG00000128595|O43852-8|CALU;nc|ENSG00000128595|O43852-5|CALU	nc|ENSG00000128595|O43852-6|CALU	nc|ENSG00000128595|O43852-6|CALU	MULTI-SECPEP	A375_MHC_IP_R2	2	391.9286193847656	3	391.528005	1171.56219	-0.19374	-7.5854E-05	0.90285	0.00035349	0.70911	0.00027764	391.52852993747933	32.12	0.60753	32.857	32.504	33.112	0.73692					22	11	3	0	0	0	0.91516	1	11403	11403		17.863	17.863	1	5482800			16505	4151	11978	12068	16142	16142					-0.016732480217797274
GEANGVWKY	9	Unmodified	_GEANGVWKY_					0	0	0		nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214;ENST00000495312.1_1_2:27255799-27258254:+|nuORF	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	MULTI-MSMS	A375_MHC_IP_R1	1	512.2030639648438	2	512.248349	1022.48214	0.087937	4.5046E-05	-0.52577	-0.00026933	-0.43784	-0.00022428	512.247990571129	44.782	0.81376	44.782	44.42	45.234	0					41	15	4	0	0	0	0.0091913	2	15631	15631;15731		185.05	149.01	1	28102000			16506	3621	11979	12069	16143;16144	16143					-0.028196896249596648
GEANGVWKY	9	Unmodified	_GEANGVWKY_					0	0	0		nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214;ENST00000495312.1_1_2:27255799-27258254:+|nuORF	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	MULTI-MSMS	A375_MHC_IP_R2	2	512.2024536132812	2	512.248349	1022.48214	-0.59219	-0.00030335	-0.2866	-0.00014681	-0.87879	-0.00045016	512.2481464255605	44.087	0.85915	44.857	44.43	45.289	0.7691					47	16	4	0	0	0	0.0074709	1	16397	16397		187.3	151.25	1	32759000			16507	3621	11979	12069	16145	16145					-0.028196896249596648
GEAPVIQRL	9	Unmodified	_GEAPVIQRL_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1;GBF1|p.S825Ffs*10|1|0.56|ENSG00000107862|chr10:102367123-102367124|-/T|frameshift_variant	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-SECPEP	A375_MHC_IP_R1	1	492.1875305175781	2	491.787641	981.56073	-0.22534	-0.00011082	-0.35491	-0.00017454	-0.58025	-0.00028536	491.78751463855525	50.106	1.0202	50.106	49.387	50.408	0					41	19	4	0	0	0	0.38578	1	17752	17752		41.84	21.386	1	4090900			16508	14531	11980	12070	16146	16146					0.06921162680123416
GEAPVIQRL	9	Unmodified	_GEAPVIQRL_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1;GBF1|p.S825Ffs*10|1|0.56|ENSG00000107862|chr10:102367123-102367124|-/T|frameshift_variant	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-SECPEP	A375_MHC_IP_R2	2	492.4775695800781	2	491.787641	981.56073	-0.74688	-0.00036731	0.23113	0.00011367	-0.51574	-0.00025364	491.7876434139693	49.19	0.50604	49.948	49.69	50.196	0.75736					17	9	2	0	0	0	0.46045	1	18453	18453		29.082	14.243	1	4244500			16509	14531	11980	12070	16147	16147					0.06921162680123416
GEARGDQVDW	10	Unmodified	_GEARGDQVDW_					0	0	0		nc|ENSG00000198930|Q6PB30-2|CSAG1;ENSG00000198930|ENST00000452779|CSAG1	nc|ENSG00000198930|Q6PB30-2|CSAG1	nc|ENSG00000198930|Q6PB30-2|CSAG1	MULTI-MSMS	A375_MHC_IP_R2	2	566.6981811523438	2	566.754527	1131.4945	-0.63727	-0.00036117	0.70616	0.00040022	0.068896	3.9047E-05	566.7546256151363	35.311	0.40456	36.074	35.878	36.283	0.76338					11	7	2	0	0	0	0.43567	1	12805	12805		32.037	10.501	1	1663000			16510	9375	11981	12071	16148	16148					-0.06598697952586008
GEARPLAGF	9	Unmodified	_GEARPLAGF_					0	0	0		ENST00000308418.8_1_11:65487749-65488293:-|nuORF;ENST00000528220.1_1_11:65487749-65488268:-|nuORF	ENST00000308418.8_1_11:65487749-65488293:-|nuORF	ENST00000308418.8_1_11:65487749-65488293:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	459.64556884765625	2	459.245609	916.476666	-0.59184	-0.0002718	0.94982	0.0004362	0.35798	0.0001644	459.245642075292	49.176	0.55695	49.933	49.69	50.247	0.75736					17	10	2	0	0	0	0.4465	1	18492	18492		38.176	5.3899	1	3534800			16511	10598	11982	12072	16149	16149					0.015086315832263608
GEASFVWN	8	Unmodified	_GEASFVWN_					0	0	0		ENSG00000174306|ENST00000683867|ZHX3;nc|ENSG00000174306|Q9H4I2-2|ZHX3	ENSG00000174306|ENST00000683867|ZHX3	ENSG00000174306|ENST00000683867|ZHX3	MSMS	A375_MHC_IP_R2	2	455.1084289550781	2	455.208692	908.402832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.341	1	20.952	20.452	21.452	0.61029								0	0	0	0.16876	1	6324	6324		12.532	3.9383	1				16512	7869	11983	12073	16150	16150					-0.05503336579090501
GEASKLQQF	9	Unmodified	_GEASKLQQF_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.S1057F|1|0.27|ENSG00000115306|chr2:54631217-54631217|C/T|missense_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R1	1	504.6610107421875	2	504.261456	1006.50836	-0.40495	-0.0002042	0.47236	0.0002382	0.067417	3.3996E-05	504.26178711498954	34.609	0.45623	34.609	34.303	34.759	0					13	8	3	0	0	0	0.27742	1	11452	11452		43.772	16.144	1	2604400			16513	3298	11984	12074	16151	16151					0.005365795465195333
GEASRLAHY	9	Unmodified	_GEASRLAHY_					0	0	0		nc|ENSG00000261716|Q6DN03|H2BC20P;ENSG00000273802|ENST00000541790|H2BC8;nc|ENSG00000220323|Q6DRA6|H2BC19P;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000276410|ENST00000615966|H2BC3;ENST00000465850.1_1_3:113822098-113822344:-|nuORF;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000274641|ENST00000616182|H2BC17;ENST00000369385.5_1_1:149814728-149815097:+|nuORF	nc|ENSG00000261716|Q6DN03|H2BC20P	nc|ENSG00000261716|Q6DN03|H2BC20P	MULTI-SECPEP	A375_MHC_IP_R1	1	502.6513366699219	2	502.251423	1002.48829	-0.15788	-7.9297E-05	-0.13495	-6.778E-05	-0.29283	-0.00014708	502.2512969733096	21.24	0.40613	21.24	20.997	21.403	0					13	7	2	0	0	0	0.49205	1	5556	5556		27.629	21.423	1	2559900			16514	3919	11985	12075	16152	16152					-0.01285171393442397
GEASRLAHY	9	Unmodified	_GEASRLAHY_					0	0	0		nc|ENSG00000261716|Q6DN03|H2BC20P;ENSG00000273802|ENST00000541790|H2BC8;nc|ENSG00000220323|Q6DRA6|H2BC19P;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000276410|ENST00000615966|H2BC3;ENST00000465850.1_1_3:113822098-113822344:-|nuORF;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000274641|ENST00000616182|H2BC17;ENST00000369385.5_1_1:149814728-149815097:+|nuORF	nc|ENSG00000261716|Q6DN03|H2BC20P	nc|ENSG00000261716|Q6DN03|H2BC20P	MULTI-SECPEP	A375_MHC_IP_R2	2	502.6510314941406	2	502.251423	1002.48829	-0.92302	-0.00046359	0.01621	8.1417E-06	-0.90681	-0.00045545	502.25140280428633	19.643	0.45642	20.253	19.942	20.399	0.6103					16	8	3	0	0	0	0.67471	1	6055	6055		17.443	8.8494	1	1178500			16515	3919	11985	12075	16153	16153					-0.01285171393442397
GEASSQNSMSS	11	Unmodified	_GEASSQNSMSS_					0	0	0		ENSG00000089847|ENST00000318934|ANKRD24;nc|ENSG00000089847|Q8TF21-2|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	MULTI-SECPEP	A375_MHC_IP_R1	1	542.125732421875	2	542.71421	1083.41387	-0.58923	-0.00031978	-1.0958	-0.00059469	-1.685	-0.00091447	542.7135315339547	100.1	0.50514	100.1	99.825	100.33	0					14	9	2	0	0	0	0.92392	1	36729	36729		17.443	6.6431	1	2186700			16516	1937	11986	12076	16154	16154					-0.12450347057756517
GEAVGIKSF	9	Unmodified	_GEAVGIKSF_					0	0	0		nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683-13|ITGA7	nc|ENSG00000135424|Q13683-9|ITGA7	nc|ENSG00000135424|Q13683-9|ITGA7	MULTI-SECPEP	A375_MHC_IP_R2	2	454.64764404296875	2	454.247818	906.481082	-0.15189	-6.8996E-05	-0.047684	-2.166E-05	-0.19957	-9.0656E-05	454.24764852253026	46.127	0.50508	46.893	46.654	47.159	0.76519					16	9	3	0	0	0	0.34746	1	17278	17278		31.268	12.011	1	2286900			16517	4680	11987	12077	16155	16155					0.02410096006144613
GEAVGIKSF	9	Unmodified	_GEAVGIKSF_					0	0	0		nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683-13|ITGA7	nc|ENSG00000135424|Q13683-9|ITGA7	nc|ENSG00000135424|Q13683-9|ITGA7	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	454.247818	906.481082	-0.36871	-0.00016749	0.34423	0.00015636	-0.024488	-1.1124E-05	454.2479117118094	47.029	0.61507	47.029	46.596	47.211	0	0.06822	8.7664E-05	NaN	31.268	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3556200			16518	4680	11987	12077							0.02410096006144613
GECPTGDMQY	10	Unmodified	_GECPTGDMQY_					0	0	0			REV__ENST00000517951.5_1_5:156822576-156936463:-|nuORF	REV__ENST00000517951.5_1_5:156822576-156936463:-|nuORF	MSMS	A375_MHC_IP_R2	2	550.6557006835938	2	550.704799	1099.39505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.051	1	69.786	69.286	70.286	0.73511								0	0	0	0.15207	1	26164	26164		13.906	1.3745	1		+		16519	18821	11988	12078	16156	16156					-0.15067599953181343
GEDCLNRLL	9	Unmodified	_GEDCLNRLL_					0	0	0		ENSG00000181555|ENST00000409792|SETD2;nc|ENSG00000181555|Q9BYW2-2|SETD2;nc|ENSG00000181555|Q9BYW2-3|SETD2	ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	MULTI-MSMS	A375_MHC_IP_R2	2	517.5592041015625	2	516.760766	1031.50698	-1.2101	-0.00062533	0.19851	0.00010258	-1.0116	-0.00052275	517.2618252177035	52.638	1.2169	53.39	52.677	53.894	0.75225					41	23	3	0	0	0	0.63811	1	19952	19952		12.532	0	1	6685200			16520	8351	11989	12079	16157	16157					-0.007513778138672933
GEDEDEEEDDE	11	Unmodified	_GEDEDEEEDDE_					0	0	0		ENSG00000139154|ENST00000266508|AEBP2;nc|ENSG00000139154|Q6ZN18|AEBP2	ENSG00000139154|ENST00000266508|AEBP2	ENSG00000139154|ENST00000266508|AEBP2	MSMS	A375_MHC_IP_R2	2	655.781005859375	2	655.704956	1309.39536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.58	1	133.74	133.24	134.24	0.16487								0	0	0	0.16334	1	52547	52547		1.3295	0	1				16521	5053	11990	12080	16158	16158					-0.24696275009318924
GEDEQPAEDSY	11	Unmodified	_GEDEQPAEDSY_					0	0	0			REV__ENSG00000006831|ENST00000357103|ADIPOR2	REV__ENSG00000006831|ENST00000357103|ADIPOR2	MSMS	A375_MHC_IP_R2	2	620.2159423828125	2	620.236029	1238.45751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.855	1	73.59	73.09	74.09	0.73541								0	0	0	0.16191	1	27654	27654		8.7454	3.9894	1		+		16522	16147	11991	12081	16159	16159					-0.15218459079642344
GEDGKVQVW	9	Unmodified	_GEDGKVQVW_					0	0	0		nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;ENST00000557314.5_1_14:20839728-20850189:-|nuORF	nc|ENSG00000129566|Q99973-2|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	MULTI-MSMS	A375_MHC_IP_R2	2	509.65338134765625	2	509.253631	1016.49271	-0.60711	-0.00030917	-0.48501	-0.00024699	-1.0921	-0.00055616	509.2533627316138	44.131	0.65858	44.9	44.53	45.188	0.76909					24	12	2	0	0	0	0.02559	1	16423	16423		78.728	32.707	1	7485700			16523	4199	11992	12082	16160	16160					-0.014877069705221402
GEDGKVQVW	9	Unmodified	_GEDGKVQVW_					0	0	0		nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;ENST00000557314.5_1_14:20839728-20850189:-|nuORF	nc|ENSG00000129566|Q99973-2|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	509.253631	1016.49271	0.13923	7.0901E-05	-0.94109	-0.00047925	-0.80186	-0.00040835	509.25313274872684	44.954	0.65815	44.954	44.626	45.284	0	0.026708	-0.00023628	NaN	78.728	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8995400			16524	4199	11992	12082							-0.014877069705221402
GEDGRILKRF	10	Unmodified	_GEDGRILKRF_					0	0	0		ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	MULTI-SECPEP	A375_MHC_IP_R2	2	397.2597961425781	3	397.559528	1189.65676	-0.59953	-0.00023835	0.063608	2.5288E-05	-0.53592	-0.00021306	397.5595547925414	29.773	0.5031	30.472	30.185	30.688	0.69872					15	9	2	0	0	0	0.90513	1	10369	10369		10.899	6.183	1	1330800			16525	1837	11993	12083	16161	16161					0.06951310520230436
GEDGYVRIHY	10	Unmodified	_GEDGYVRIHY_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-MSMS	A375_MHC_IP_R1	1	605.1880493164062	2	604.78837	1207.56219	-0.49509	-0.00029943	0.10079	6.096E-05	-0.3943	-0.00023847	604.7883224307068	41.063	0.45339	41.063	40.813	41.266	0					19	8	3	0	0	0	2.8699E-05	1	14147	14147		160.69	118.6	1	6098200			16526	1797	11994	12084	16162	16162					-0.033292480217596676
GEDGYVRIHY	10	Unmodified	_GEDGYVRIHY_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-SECPEP	A375_MHC_IP_R1	1	403.92767333984375	3	403.528005	1207.56219	-0.57792	-0.00023321	0.51336	0.00020716	-0.064554	-2.605E-05	403.52817630079625	41.056	0.60538	41.056	40.762	41.368	0					31	11	4	0	0	0	0.19481	1	14129	14129		57.249	45.731	1	13299000			16527	1797	11994	12084	16163	16163					-0.033292480217596676
GEDGYVRIHY	10	Unmodified	_GEDGYVRIHY_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-MSMS	A375_MHC_IP_R2	2	605.187744140625	2	604.78837	1207.56219	-0.50148	-0.00030329	-0.35362	-0.00021386	-0.8551	-0.00051716	604.7880781320724	40.333	0.35502	41.108	40.93	41.285	0.77451					12	6	2	0	0	0	2.8699E-05	1	14943	14943		160.69	126.29	1	7562100			16528	1797	11994	12084	16164	16164					-0.033292480217596676
GEDGYVRIHY	10	Unmodified	_GEDGYVRIHY_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-SECPEP	A375_MHC_IP_R2	2	403.9278564453125	3	403.528005	1207.56219	-0.049114	-1.9819E-05	0.093103	3.757E-05	0.043989	1.7751E-05	403.52812528577465	40.359	0.914	41.134	40.626	41.54	0.77451					38	17	4	0	0	0	0.22217	1	14935	14935		47.732	36.214	1	14602000			16529	1797	11994	12084	16165	16165					-0.033292480217596676
GEDIVTKLL	9	Unmodified	_GEDIVTKLL_					0	0	0		ENSG00000103429|ENST00000261658|BFAR;nc|ENSG00000103429|Q9NZS9-2|BFAR	ENSG00000103429|ENST00000261658|BFAR	ENSG00000103429|ENST00000261658|BFAR	MULTI-MSMS	A375_MHC_IP_R1	1	494.6895446777344	2	494.289682	986.564812	-0.36757	-0.00018169	0.16617	8.2136E-05	-0.2014	-9.9551E-05	494.28970983324706	89.551	0.65891	89.551	89.272	89.931	0					21	12	2	0	0	0	0.0090499	1	32862	32862		100.09	30.986	1	6679100			16530	2451	11995	12085	16166	16166					0.07099207383191697
GEDIVTKLL	9	Unmodified	_GEDIVTKLL_					0	0	0		ENSG00000103429|ENST00000261658|BFAR;nc|ENSG00000103429|Q9NZS9-2|BFAR	ENSG00000103429|ENST00000261658|BFAR	ENSG00000103429|ENST00000261658|BFAR	MULTI-MSMS	A375_MHC_IP_R2	2	494.6891174316406	2	494.289682	986.564812	-0.41887	-0.00020704	-0.17605	-8.7018E-05	-0.59491	-0.00029406	494.2895284578781	88.674	0.81024	89.406	89.026	89.836	0.7318					25	15	2	0	0	0	0.0090499	4	33728	33728;33762;33772;33787		100.09	28.168	1	8452500			16531	2451	11995	12085	16167;16168;16169;16170	16167					0.07099207383191697
GEDIYTAGKTY	11	Unmodified	_GEDIYTAGKTY_					0	0	0		ENSG00000163975|ENST00000296350|MELTF	ENSG00000163975|ENST00000296350|MELTF	ENSG00000163975|ENST00000296350|MELTF	MULTI-MSMS	A375_MHC_IP_R1	1	609.687744140625	2	609.287868	1216.56118	-0.22717	-0.00013841	0.2343	0.00014276	0.0071324	4.3457E-06	609.2879714704812	39.285	0.71066	39.285	39.033	39.744	0					37	13	4	0	0	0	1.4017E-08	2	13382	13382;13437		164.85	129.92	1	32565000			16532	6756	11996	12086	16171;16172	16171					-0.03843507181318273
GEDIYTAGKTY	11	Unmodified	_GEDIYTAGKTY_					0	0	0		ENSG00000163975|ENST00000296350|MELTF	ENSG00000163975|ENST00000296350|MELTF	ENSG00000163975|ENST00000296350|MELTF	MULTI-MSMS	A375_MHC_IP_R2	2	609.687255859375	2	609.287868	1216.56118	-0.79495	-0.00048436	0.070659	4.3052E-05	-0.7243	-0.0004413	609.2878683083501	38.652	0.76486	39.427	39.149	39.914	0.77451					38	14	5	0	0	0	8.392E-13	1	14204	14204		176.41	139.9	1	35339000			16533	6756	11996	12086	16173	16173					-0.03843507181318273
GEDLGVAFW	9	Unmodified	_GEDLGVAFW_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	A375_MHC_IP_R2	2	995.2076416015625	1	993.467623	992.460347	-0.011208	-1.1135E-05	-0.98422	-0.00097779	-0.99543	-0.00098893	993.4666139994465	127.32	0.406	127.59	127.41	127.82	0.26593					12	7	3	0	0	0	0.077132	1	49959	49959		54.774	26.287	1	29555000			16534	9625	11997	12087	16174	16174					-0.03618494373529302
GEDLIIKGL	9	Unmodified	_GEDLIIKGL_					0	0	0		ENST00000442013.1_1_20:6181997-6182240:-|nuORF	ENST00000442013.1_1_20:6181997-6182240:-|nuORF	ENST00000442013.1_1_20:6181997-6182240:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	480.01324462890625	2	479.2844	956.554247	-0.56159	-0.00026916	0.055782	2.6735E-05	-0.50581	-0.00024243	479.28440514816214	77.448	0.45781	78.191	77.908	78.365	0.74293					13	8	2	0	0	0	0.24324	1	29415	29415		38.176	0	1	1566300			16535	11989	11998	12088	16175	16175					0.07423224728779587
GEDLQWWPD	9	Unmodified	_GEDLQWWPD_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.S1656Tfs*30|1|0.09|ENSG00000104517|chr8:102286608-102286609|-/GG|frameshift_variant	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MSMS	A375_MHC_IP_R2	2	382.60845947265625	3	382.501456	1144.48254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.053	1	34.805	34.305	35.305	0.75225								0	0	0	0.15486	1	12247	12247		4.897	0	1				16536	2516	11999	12089	16176	16176					-0.0839231469576589
GEDPEGNKGF	10	Unmodified	_GEDPEGNKGF_					0	0	0		ENSG00000079432|ENST00000681038|CIC;nc|ENSG00000079432|Q96RK0-2|CIC	ENSG00000079432|ENST00000681038|CIC	ENSG00000079432|ENST00000681038|CIC	MULTI-MSMS	A375_MHC_IP_R1	1	525.630126953125	2	525.230353	1048.44615	-0.59348	-0.00031172	0.048934	2.5701E-05	-0.54455	-0.00028601	525.2303241364243	24.572	0.55562	24.572	24.397	24.953	0					16	10	3	0	0	0	0.0036544	1	7014	7014		96.936	47.003	1	9909000			16537	1696	12000	12090	16177	16177					-0.07613191592463409
GEDPYPHKF	9	Unmodified	_GEDPYPHKF_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000565738.1_1_16:75674022-75675473:-|nuORF	ENSG00000065427|ENST00000302445|KARS1;ENST00000565738.1_1_16:75674022-75675473:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	MULTI-MSMS	A375_MHC_IP_R1	1	545.6781005859375	2	545.253631	1088.49271	-0.67031	-0.00036549	-0.046359	-2.5277E-05	-0.71667	-0.00039076	545.2535260011219	28.198	0.705	28.198	27.786	28.491	0					39	13	5	0	0	0	0.0098085	2	8625	8625;8636		114.2	56.73	1	27663000			16538	1382;13550	12001	12091	16178;16179	16178					-0.047997069705161266
GEDPYPHKF	9	Unmodified	_GEDPYPHKF_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000565738.1_1_16:75674022-75675473:-|nuORF	ENSG00000065427|ENST00000302445|KARS1;ENST00000565738.1_1_16:75674022-75675473:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	364.238037109375	3	363.83818	1088.49271	0.075118	2.7331E-05	-0.25971	-9.4494E-05	-0.18459	-6.7163E-05	363.83801675985256	28.21	0.80749	28.21	27.887	28.694	0					45	15	5	0	0	0	0.16595	1	8631	8631		45.74	28.297	1	56945000			16539	1382;13550	12001	12091	16180	16180					-0.047997069705161266
GEDPYPHKF	9	Unmodified	_GEDPYPHKF_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000565738.1_1_16:75674022-75675473:-|nuORF	ENSG00000065427|ENST00000302445|KARS1;ENST00000565738.1_1_16:75674022-75675473:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	MULTI-MSMS	A375_MHC_IP_R2	2	545.6531372070312	2	545.253631	1088.49271	-0.75972	-0.00041424	0.014478	7.8942E-06	-0.74524	-0.00040635	545.2535706819167	27.55	0.76068	28.228	27.843	28.604	0.67857					37	14	4	0	0	0	0.0037351	2	9406	9372;9406		137.42	79.952	1	27724000			16540	1382;13550	12001	12091	16181;16182	16182					-0.047997069705161266
GEDPYPHKF	9	Unmodified	_GEDPYPHKF_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000565738.1_1_16:75674022-75675473:-|nuORF	ENSG00000065427|ENST00000302445|KARS1;ENST00000565738.1_1_16:75674022-75675473:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	364.238037109375	3	363.83818	1088.49271	-0.0032924	-1.1979E-06	-0.10156	-3.695E-05	-0.10485	-3.8148E-05	363.8380521437904	27.565	0.65927	28.243	27.996	28.655	0.67857					40	12	5	0	0	0	0.16595	1	9400	9400		45.74	21.95	1	61564000			16541	1382;13550	12001	12091	16183	16183					-0.047997069705161266
GEDRGGPEW	9	Unmodified	_GEDRGGPEW_					0	0	0			REV__ENST00000579572.1_1_17:80193878-80195110:+|nuORF	REV__ENST00000579572.1_1_17:80193878-80195110:+|nuORF	MSMS	A375_MHC_IP_R2	2	501.6921691894531	2	501.717413	1001.42027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.901	1	68.636	68.136	69.136	0.73511								0	0	0	0.15486	1	25733	25733		7.9102	1.5561	1		+		16542	26336	12002	12092	16184	16184					-0.08038041044085276
GEDSSVIHY	9	Unmodified	_GEDSSVIHY_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-SECPEP	A375_MHC_IP_R1	1	504.127197265625	2	503.727446	1005.44034	-0.7513	-0.00037845	0.42077	0.00021196	-0.33052	-0.00016649	503.72761442682366	38.271	0.5107	38.271	38.016	38.526	0					28	9	4	0	0	0	0.016207	1	12934	12934		97.075	61.03	1	16062000			16543	3005	12003	12093	16185	16185					-0.062162901041233454
GEDSSVIHY	9	Unmodified	_GEDSSVIHY_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1269836425781	2	503.727446	1005.44034	-0.98726	-0.00049731	0.52135	0.00026262	-0.46592	-0.00023469	503.7276282446498	37.53	0.61249	38.301	38.02	38.632	0.7709					24	11	3	0	0	0	0.3243	1	13718	13718		44.407	16.778	1	18067000			16544	3005	12003	12093	16186	16186					-0.062162901041233454
GEDTFVHIW	9	Unmodified	_GEDTFVHIW_					0	0	0		ENST00000468778.5_1_2:74650926-74652825:+|nuORF;nc|ENSG00000005448|Q9H977-3|WDR54;ENSG00000005448|ENST00000348227|WDR54;nc|ENSG00000005448|Q9H977-4|WDR54	ENST00000468778.5_1_2:74650926-74652825:+|nuORF	ENST00000468778.5_1_2:74650926-74652825:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	552.6595458984375	2	552.261456	1102.50836	-0.58837	-0.00032493	-0.72929	-0.00040276	-1.3177	-0.00072769	552.2608204773012	95.841	1.4714	95.841	94.853	96.325	0					58	28	4	0	0	0	0.001809	2	35170	35139;35170		146.01	103.91	1	13752000			16545	893	12004	12094	16187;16188	16188					-0.03879420453495186
GEDTIRQAF	9	Unmodified	_GEDTIRQAF_					0	0	0		PUF60|p.T484Rfs*40|1|0.47|ENSG00000179950|chr8:143816748-143816749|TG/-|frameshift_variant;nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	PUF60|p.T484Rfs*40|1|0.47|ENSG00000179950|chr8:143816748-143816749|TG/-|frameshift_variant	PUF60|p.T484Rfs*40|1|0.47|ENSG00000179950|chr8:143816748-143816749|TG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1561889648438	2	518.756538	1035.49852	-0.35902	-0.00018624	0.17106	8.8736E-05	-0.18797	-9.7508E-05	518.7564334429088	42.612	0.80961	42.612	42.082	42.891	0					35	15	3	0	0	0	0.011107	1	14743	14743		134.3	86.547	1	12886000			16546	15256	12005	12095	16189	16189					-0.017806084588528392
GEDTIRQAF	9	Unmodified	_GEDTIRQAF_					0	0	0		PUF60|p.T484Rfs*40|1|0.47|ENSG00000179950|chr8:143816748-143816749|TG/-|frameshift_variant;nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	PUF60|p.T484Rfs*40|1|0.47|ENSG00000179950|chr8:143816748-143816749|TG/-|frameshift_variant	PUF60|p.T484Rfs*40|1|0.47|ENSG00000179950|chr8:143816748-143816749|TG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	519.15625	2	518.756538	1035.49852	-0.69558	-0.00036084	-0.16758	-8.6934E-05	-0.86316	-0.00044777	518.756402427367	41.845	0.6644	42.62	42.3	42.964	0.77451					32	12	3	0	0	0	0.011405	1	15494	15494		122.18	62.811	1	15405000			16547	15256	12005	12095	16190	16190					-0.017806084588528392
GEDVEIVHQ	9	Unmodified	_GEDVEIVHQ_					0	0	0			REV__ENSG00000144857|ENST00000682979|BOC	REV__ENSG00000144857|ENST00000682979|BOC	MULTI-MSMS	A375_MHC_IP_R1	1	513.1741943359375	2	513.248546	1024.48254	-0.37074	-0.00019028	-0.066687	-3.4227E-05	-0.43743	-0.00022451	513.2484318054552	40.524	0.35597	40.524	40.304	40.66	0					14	6	3	0	0	0	0.32092	1	13935	13935		29.082	2.8134	1	3519800	+		16548	19452	12006	12096	16191	16191					-0.02872314695764544
GEDVEIVHQ	9	Unmodified	_GEDVEIVHQ_					0	0	0			REV__ENSG00000144857|ENST00000682979|BOC	REV__ENSG00000144857|ENST00000682979|BOC	MULTI-MSMS	A375_MHC_IP_R2	2	513.1744384765625	2	513.248546	1024.48254	-0.7972	-0.00040916	0.35222	0.00018078	-0.44498	-0.00022839	513.2487751624411	39.776	0.40702	40.55	40.32	40.727	0.77451					12	7	2	0	0	0	0.34064	1	14735	14735		27.629	2.2295	1	2747700	+		16549	19452	12006	12096	16192	16192					-0.02872314695764544
GEDVETSKKW	10	Unmodified	_GEDVETSKKW_					0	0	0		EDF1|p.R34Q|1|0.22|ENSG00000107223|chr9:136863849-136863849|C/T|missense_variant;nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1;ENSG00000107223|ENST00000224073|EDF1	EDF1|p.R34Q|1|0.22|ENSG00000107223|chr9:136863849-136863849|C/T|missense_variant	EDF1|p.R34Q|1|0.22|ENSG00000107223|chr9:136863849-136863849|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	393.92779541015625	3	393.527782	1177.56152	0.20232	7.9618E-05	-0.04451	-1.7516E-05	0.15781	6.2102E-05	393.5277691736538	23.001	0.70682	23.001	22.52	23.227	0					43	13	5	0	0	0	0.20671	2	6181	6181;6304		48.561	25.545	1	91328000			16550	820	12007	12097	16193;16194	16193					-0.02016087461470306
GEDVETSKKW	10	Unmodified	_GEDVETSKKW_					0	0	0		EDF1|p.R34Q|1|0.22|ENSG00000107223|chr9:136863849-136863849|C/T|missense_variant;nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1;ENSG00000107223|ENST00000224073|EDF1	EDF1|p.R34Q|1|0.22|ENSG00000107223|chr9:136863849-136863849|C/T|missense_variant	EDF1|p.R34Q|1|0.22|ENSG00000107223|chr9:136863849-136863849|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	393.92767333984375	3	393.527782	1177.56152	-0.22091	-8.6935E-05	0.5905	0.00023238	0.36959	0.00014544	393.5278596767748	23.515	0.66224	23.515	23.227	23.889	0					28	12	3	0	0	0	0.67395	1	6475	6475		22.109	17.061	1	15130000			16551	820	12007	12097	16195	16195					-0.02016087461470306
GEDVETSKKW	10	Unmodified	_GEDVETSKKW_					0	0	0		EDF1|p.R34Q|1|0.22|ENSG00000107223|chr9:136863849-136863849|C/T|missense_variant;nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1;ENSG00000107223|ENST00000224073|EDF1	EDF1|p.R34Q|1|0.22|ENSG00000107223|chr9:136863849-136863849|C/T|missense_variant	EDF1|p.R34Q|1|0.22|ENSG00000107223|chr9:136863849-136863849|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	590.1878051757812	2	589.788035	1177.56152	-0.61174	-0.0003608	0.12679	7.4782E-05	-0.48495	-0.00028602	589.7879927154361	23.542	0.56064	23.542	23.227	23.787	0					19	10	3	0	0	0	0.13439	1	6507	6507		83.278	54.196	1	6662500			16552	820	12007	12097	16196	16196					-0.02016087461470306
GEDVETSKKW	10	Unmodified	_GEDVETSKKW_					0	0	0		EDF1|p.R34Q|1|0.22|ENSG00000107223|chr9:136863849-136863849|C/T|missense_variant;nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1;ENSG00000107223|ENST00000224073|EDF1	EDF1|p.R34Q|1|0.22|ENSG00000107223|chr9:136863849-136863849|C/T|missense_variant	EDF1|p.R34Q|1|0.22|ENSG00000107223|chr9:136863849-136863849|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	590.1873168945312	2	589.788035	1177.56152	-0.16768	-9.8898E-05	0.11446	6.7505E-05	-0.053226	-3.1392E-05	589.7880198574579	23.006	0.65461	23.006	22.623	23.278	0					32	12	4	0	0	0	0.018275	1	6193	6193		169.92	124.18	1	42948000			16553	820	12007	12097	16197	16197					-0.02016087461470306
GEDVETSKKW	10	Unmodified	_GEDVETSKKW_					0	0	0		EDF1|p.R34Q|1|0.22|ENSG00000107223|chr9:136863849-136863849|C/T|missense_variant;nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1;ENSG00000107223|ENST00000224073|EDF1	EDF1|p.R34Q|1|0.22|ENSG00000107223|chr9:136863849-136863849|C/T|missense_variant	EDF1|p.R34Q|1|0.22|ENSG00000107223|chr9:136863849-136863849|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	590.1879272460938	2	589.788035	1177.56152	-0.89667	-0.00052885	0.47469	0.00027997	-0.42198	-0.00024888	589.7883081267738	20.716	0.76117	21.326	20.855	21.616	0.61029					44	14	4	0	0	0	0.011413	1	6392	6392		135.72	97.104	1	13276000			16554	820	12007	12097	16198	16198					-0.02016087461470306
GEDVETSKKW	10	Unmodified	_GEDVETSKKW_					0	0	0		EDF1|p.R34Q|1|0.22|ENSG00000107223|chr9:136863849-136863849|C/T|missense_variant;nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1;ENSG00000107223|ENST00000224073|EDF1	EDF1|p.R34Q|1|0.22|ENSG00000107223|chr9:136863849-136863849|C/T|missense_variant	EDF1|p.R34Q|1|0.22|ENSG00000107223|chr9:136863849-136863849|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	393.9275817871094	3	393.527782	1177.56152	-0.509	-0.00020031	0.18908	7.4408E-05	-0.31992	-0.0001259	393.52784997724274	23.115	0.76086	23.745	23.368	24.129	0.63014					29	14	3	0	0	0	0.2729	1	7399	7399		42.068	21.657	1	10510000			16555	820	12007	12097	16199	16199					-0.02016087461470306
GEDVETSKKW	10	Unmodified	_GEDVETSKKW_					0	0	0		EDF1|p.R34Q|1|0.22|ENSG00000107223|chr9:136863849-136863849|C/T|missense_variant;nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1;ENSG00000107223|ENST00000224073|EDF1	EDF1|p.R34Q|1|0.22|ENSG00000107223|chr9:136863849-136863849|C/T|missense_variant	EDF1|p.R34Q|1|0.22|ENSG00000107223|chr9:136863849-136863849|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	590.1874389648438	2	589.788035	1177.56152	-0.90202	-0.000532	0.51686	0.00030484	-0.38516	-0.00022716	589.788276880341	23.122	0.30672	23.752	23.521	23.828	0.63014					9	5	2	0	0	0	0.13439	1	7406	7406		83.278	57.01	1	5176400			16556	820	12007	12097	16200	16200					-0.02016087461470306
GEDVYERTLT	10	Unmodified	_GEDVYERTLT_					0	0	0		ENSG00000088320|ENST00000201979|REM1	ENSG00000088320|ENST00000201979|REM1	ENSG00000088320|ENST00000201979|REM1	MULTI-SECPEP	A375_MHC_IP_R1	1	394.9955139160156	3	394.85942	1181.55643	0.13401	5.2915E-05	0.10373	4.0959E-05	0.23774	9.3873E-05	394.85942148717567	23.028	0.60361	23.028	22.623	23.227	0					22	11	4	0	0	0	0.87043	1	6278	6278		13.519	0	1	6173200			16557	1888	12008	12098	16201	16201					-0.027083913240858237
GEDVYERTLT	10	Unmodified	_GEDVYERTLT_					0	0	0		ENSG00000088320|ENST00000201979|REM1	ENSG00000088320|ENST00000201979|REM1	ENSG00000088320|ENST00000201979|REM1	MULTI-MSMS	A375_MHC_IP_R2	2	592.6873779296875	2	591.785492	1181.55643	-0.89608	-0.00053029	0.81392	0.00048167	-0.082162	-4.8622E-05	591.7859126839204	20.709	0.55821	21.319	21.008	21.566	0.61029					16	10	2	0	0	0	0.70925	1	6469	6469		8.1555	0	1	1780800			16558	1888	12008	12098	16202	16202					-0.027083913240858237
GEDVYERTLT	10	Unmodified	_GEDVYERTLT_					0	0	0		ENSG00000088320|ENST00000201979|REM1	ENSG00000088320|ENST00000201979|REM1	ENSG00000088320|ENST00000201979|REM1	MULTI-SECPEP	A375_MHC_IP_R2	2	395.25921630859375	3	394.85942	1181.55643	-0.47882	-0.00018907	0.52395	0.00020689	0.045134	1.7822E-05	394.8595329673062	20.739	0.8632	21.349	20.803	21.666	0.61029					32	16	3	0	0	0	0.77204	1	6429	6429		18.721	0	1	3630500			16559	1888	12008	12098	16203	16203					-0.027083913240858237
GEEDEDMV	8	Unmodified	_GEEDEDMV_					0	0	0		nc|ENSG00000127511|O75182|SIN3B;ENSG00000127511|ENST00000248054|SIN3B	nc|ENSG00000127511|O75182|SIN3B	nc|ENSG00000127511|O75182|SIN3B	MSMS	A375_MHC_IP_R2	2	462.1694641113281	2	462.168573	922.322592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.207	1	88.939	88.439	89.439	0.7318								0	0	0	0.16876	1	33566	33566		5.7604	1.816	1				16560	4094	12009	12099	16204	16204					-0.14167610755100668
GEEDEDMV	8	Unmodified	_GEEDEDMV_					0	0	0		nc|ENSG00000127511|O75182|SIN3B;ENSG00000127511|ENST00000248054|SIN3B	nc|ENSG00000127511|O75182|SIN3B	nc|ENSG00000127511|O75182|SIN3B	MSMS	A375_MHC_IP_R2	2	462.189453125	2	462.168573	922.322592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.244	1	98	97.5	98.5	0.75586								0	0	0	0.16876	1	36912	36912		10.183	1.5901	1				16561	4094	12009	12099	16205	16205					-0.14167610755100668
GEEDTAEKDEL	11	Unmodified	_GEEDTAEKDEL_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MSMS	A375_MHC_IP_R1	1	618.6668701171875	2	618.26733	1234.52011	-0.68768	-0.00042517	0.28065	0.00017352	-0.40702	-0.00025165	618.267585496954	26.399	0.50661	26.399	26.221	26.728	0					16	9	2	0	0	0	1.3317E-12	1	7871	7871		173.14	131.18	1	10124000			16562	1188	12010	12100	16206	16206					-0.08777313011478327
GEEDTAEKDEL	11	Unmodified	_GEEDTAEKDEL_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MSMS	A375_MHC_IP_R2	2	618.6668701171875	2	618.26733	1234.52011	-1.1172	-0.00069075	0.14233	8.7998E-05	-0.9749	-0.00060275	618.267352948373	25.872	0.5605	26.532	26.347	26.907	0.65992					23	10	3	0	0	0	1.0103E-14	1	8699	8699		185.27	143.32	1	6811700			16563	1188	12010	12100	16207	16207					-0.08777313011478327
GEEEFSYGY	9	Unmodified	_GEEEFSYGY_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-MSMS	A375_MHC_IP_R1	1	541.1112670898438	2	540.711462	1079.40837	-0.645	-0.00034876	0.3265	0.00017654	-0.3185	-0.00017222	540.7116335439091	68.739	0.70908	68.739	68.31	69.02	0					32	13	3	0	0	0	0.17328	2	24898	24866;24898		39.957	25.376	1	6113800			16564	6014	12011	12101	16208;16209	16209					-0.12815702577927368
GEEEFSYGY	9	Unmodified	_GEEEFSYGY_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-MSMS	A375_MHC_IP_R2	2	541.1818237304688	2	540.711462	1079.40837	-0.73147	-0.00039552	0.14587	7.8872E-05	-0.58561	-0.00031664	540.7115757767788	68.213	0.66154	68.948	68.611	69.272	0.73512					33	12	4	0	0	0	0.12592	2	25831	25798;25831		46.021	29.872	1	6777900			16565	6014	12011	12101	16210;16211	16211					-0.12815702577927368
GEEEGRYQRA	10	Unmodified	_GEEEGRYQRA_					0	0	0		ENST00000409410.6_3_19:38826782-38827079:+|nuORF	ENST00000409410.6_3_19:38826782-38827079:+|nuORF	ENST00000409410.6_3_19:38826782-38827079:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	399.2787170410156	3	398.854781	1193.54251	-0.34618	-0.00013808	-0.15563	-6.2075E-05	-0.50182	-0.00020015	398.8547502696317	19.189	0.4522	19.792	19.533	19.986	0.60308					15	8	3	0	0	0	0.91909	1	5867	5867		8.4443	4.0382	1	1835800			16566	11632	12012	12102	16212	16212					-0.04651624032521795
GEEETTRISY	10	Unmodified	_GEEETTRISY_					0	0	0		ENSG00000091164|ENST00000217515|TXNL1;ENST00000587807.5_1_18:54270260-54293401:-|nuORF;TXNL1|p.Q252P|1|0.47|ENSG00000091164|chr18:56611078-56611078|T/G|missense_variant	ENSG00000091164|ENST00000217515|TXNL1	ENSG00000091164|ENST00000217515|TXNL1	MULTI-SECPEP	A375_MHC_IP_R1	1	593.1746215820312	2	592.775125	1183.5357	-0.58521	-0.0003469	-0.19255	-0.00011414	-0.77776	-0.00046103	593.2768453162798	32.789	0.4045	32.789	32.585	32.989	0					14	7	3	0	0	0	0.68214	1	10679	10679		37.771	20.658	1	2252500			16567	1974	12013	12103	16213	16213					-0.04872981703738333
GEEETTRISY	10	Unmodified	_GEEETTRISY_					0	0	0		ENSG00000091164|ENST00000217515|TXNL1;ENST00000587807.5_1_18:54270260-54293401:-|nuORF;TXNL1|p.Q252P|1|0.47|ENSG00000091164|chr18:56611078-56611078|T/G|missense_variant	ENSG00000091164|ENST00000217515|TXNL1	ENSG00000091164|ENST00000217515|TXNL1	MULTI-SECPEP	A375_MHC_IP_R2	2	593.1748046875	2	592.775125	1183.5357	-0.57942	-0.00034346	-0.29655	-0.00017579	-0.87597	-0.00051925	592.7751430023145	32.111	0.35677	32.848	32.704	33.061	0.73691					10	6	2	0	0	0	0.39465	1	11431	11431		57.108	29.479	1	2290900			16568	1974	12013	12103	16214	16214					-0.04872981703738333
GEEGEATRRW	10	Unmodified	_GEEGEATRRW_					0	0	0		ENST00000314117.8_1_4:37687875-37687938:-|nuORF	ENST00000314117.8_1_4:37687875-37687938:-|nuORF	ENST00000314117.8_1_4:37687875-37687938:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	397.9231872558594	3	397.523143	1189.5476	-0.096748	-3.8459E-05	0.28937	0.00011503	0.19263	7.6574E-05	397.52322069738636	20.161	0.507	20.161	19.877	20.384	0					33	9	4	0	0	0	0.72578	1	5094	5094		29.281	29.281	1	32016000			16569	10647	12014	12104	16215	16215					-0.0395932016988354
GEEGEATRRW	10	Unmodified	_GEEGEATRRW_					0	0	0		ENST00000314117.8_1_4:37687875-37687938:-|nuORF	ENST00000314117.8_1_4:37687875-37687938:-|nuORF	ENST00000314117.8_1_4:37687875-37687938:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	596.1809692382812	2	595.781076	1189.5476	-0.35431	-0.00021109	0.11032	6.5726E-05	-0.24399	-0.00014537	595.7810735671882	20.155	0.40538	20.155	19.928	20.334	0					20	7	4	0	0	0	0.7212	1	5113	5113		20.415	15.518	1	10775000			16570	10647	12014	12104	16216	16216					-0.0395932016988354
GEEGEATRRW	10	Unmodified	_GEEGEATRRW_					0	0	0		ENST00000314117.8_1_4:37687875-37687938:-|nuORF	ENST00000314117.8_1_4:37687875-37687938:-|nuORF	ENST00000314117.8_1_4:37687875-37687938:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	397.923095703125	3	397.523143	1189.5476	-0.37179	-0.0001478	0.21712	8.631E-05	-0.15467	-6.1486E-05	397.52318854046644	19.153	0.55318	19.756	19.483	20.037	0.60308					31	10	4	0	0	0	0.08679	1	5855	5855		93.448	37.981	1	25209000			16571	10647	12014	12104	16217	16217					-0.0395932016988354
GEEGEATRRW	10	Unmodified	_GEEGEATRRW_					0	0	0		ENST00000314117.8_1_4:37687875-37687938:-|nuORF	ENST00000314117.8_1_4:37687875-37687938:-|nuORF	ENST00000314117.8_1_4:37687875-37687938:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	596.1807861328125	2	595.781076	1189.5476	-0.84204	-0.00050167	0.1561	9.3E-05	-0.68594	-0.00040867	595.7811688610166	19.155	0.3023	19.758	19.633	19.935	0.60308					10	5	2	0	0	0	0.91516	1	5874	5874		20.415	20.415	1	9397400			16572	10647	12014	12104	16218	16218					-0.0395932016988354
GEEGEGEDDPD	11	Unmodified	_GEEGEGEDDPD_					0	0	0			REV__ENSG00000049769|ENST00000055335|PPP1R3F	REV__ENSG00000049769|ENST00000055335|PPP1R3F	MSMS	A375_MHC_IP_R2	2	574.689453125	2	574.696737	1147.37892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.138	1	59.885	59.385	60.385	0.74714								0	0	0	0.16249	1	22379	22379		5.7319	0.97584	1		+		16573	16382	12015	12105	16219	16219					-0.18887311384742134
GEEGSARMW	9	Unmodified	_GEEGSARMW_					0	0	0		ENST00000550009.1_1_12:120875908-120876378:+|nuORF;ENSG00000111775|ENST00000229379|COX6A1	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	512.12158203125	2	511.721641	1021.42873	-0.60929	-0.00031179	0.041755	2.1367E-05	-0.56753	-0.00029042	511.72165208310605	37.913	0.66232	37.913	37.556	38.218	0					28	12	3	0	0	0	0.0575	1	12771	12771		76.825	47.743	1	11453000			16574	3025	12016	12106	16220	16220					-0.08112810399120463
GEEGSARMW	9	Unmodified	_GEEGSARMW_					0	0	0		ENST00000550009.1_1_12:120875908-120876378:+|nuORF;ENSG00000111775|ENST00000229379|COX6A1	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1212158203125	2	511.721641	1021.42873	-1.3938	-0.00071321	0.5754	0.00029445	-0.81835	-0.00041877	511.72195535683136	37.021	0.71033	37.792	37.513	38.223	0.7709					35	13	4	0	0	0	0.022401	1	13513	13513		99.755	57.916	1	21086000			16575	3025	12016	12106	16221	16221					-0.08112810399120463
GEEGSARMW	9	Oxidation (M)	_GEEGSARM(Oxidation (M))W_		GEEGSARM(1)W		GEEGSARM(73)W	0	0	1		ENST00000550009.1_1_12:120875908-120876378:+|nuORF;ENSG00000111775|ENST00000229379|COX6A1	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	520.1187744140625	2	519.719098	1037.42364	-0.71851	-0.00037342	-0.28065	-0.00014586	-0.99915	-0.00051928	519.718997828424	25.684	2.2272	25.684	25.053	27.28	0					82	43	3	0	0	0	0.061442	1	7498	7498		72.968	44.481	1	20470000			16576	3025	12016	12107	16222	16222		144			-0.09357114261729294
GEELAAQSL	9	Unmodified	_GEELAAQSL_					0	0	0			REV__ENST00000443339.5_1_3:9475802-9506425:+|nuORF	REV__ENST00000443339.5_1_3:9475802-9506425:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	458.99261474609375	2	459.232364	916.450176	-0.22432	-0.00010301	-0.025215	-1.1579E-05	-0.24953	-0.00011459	459.23228118211	57.477	0.4572	57.477	57.263	57.72	0					10	8	2	0	0	0	0.43707	1	20689	20689		36.044	19.102	1	1467500	+		16577	20830	12017	12108	16223	16223					-0.011391020987502998
GEELAAQSL	9	Unmodified	_GEELAAQSL_					0	0	0			REV__ENST00000443339.5_1_3:9475802-9506425:+|nuORF	REV__ENST00000443339.5_1_3:9475802-9506425:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	458.9924011230469	2	459.232364	916.450176	-0.80438	-0.0003694	0.41708	0.00019154	-0.3873	-0.00017786	459.23254676034804	56.785	0.61119	57.535	57.101	57.712	0.75015					15	11	2	0	0	0	0.43707	1	21448	21448		28.487	6.7402	1	1128500	+		16578	20830	12017	12108	16224	16224					-0.011391020987502998
GEESSIRQY	9	Unmodified	_GEESSIRQY_					0	0	0		ENSG00000127948|ENST00000461988|POR;POR|p.I444Sfs*101|1|0.39|ENSG00000127948|chr7:75985133-75985133|C/-|frameshift_variant	ENSG00000127948|ENST00000461988|POR	ENSG00000127948|ENST00000461988|POR	MULTI-SECPEP	A375_MHC_IP_R1	1	535.1505737304688	2	534.751453	1067.48835	-0.79575	-0.00042553	-0.52009	-0.00027812	-1.3158	-0.00070365	535.2528815043105	24.614	0.60561	24.614	24.347	24.953	0					27	11	4	0	0	0	0.13208	1	7027	7027		66.457	66.457	1	7124300			16579	4112	12018	12109	16225	16225					-0.04269216184070501
GEESSIRQY	9	Unmodified	_GEESSIRQY_					0	0	0		ENSG00000127948|ENST00000461988|POR;POR|p.I444Sfs*101|1|0.39|ENSG00000127948|chr7:75985133-75985133|C/-|frameshift_variant	ENSG00000127948|ENST00000461988|POR	ENSG00000127948|ENST00000461988|POR	MULTI-MATCH	A375_MHC_IP_R2	2		2	534.751453	1067.48835	-1.0669	-0.00057051	-0.65413	-0.0003498	-1.721	-0.0009203	535.2523161471158	24.036	0.76364	24.679	24.347	25.11	0.64368	0.032775	-6.8307E-05	NaN	66.457	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5059800			16580	4112	12018	12109							-0.04269216184070501
GEFAKVLEL	9	Unmodified	_GEFAKVLEL_					0	0	0		nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;ENSG00000105568|ENST00000322088|PPP2R1A	nc|ENSG00000137713|P30154-3|PPP2R1B	nc|ENSG00000137713|P30154-3|PPP2R1B	MULTI-SECPEP	A375_MHC_IP_R1	1	503.6142578125	2	503.2844	1004.55425	-0.43995	-0.00022142	0.084513	4.2534E-05	-0.35543	-0.00017888	503.2842581986884	91.482	1.0622	91.482	91.148	92.211	0					54	20	4	0	0	0	0.038931	1	33636	33636		100.09	0	1	17731000			16581	14629	12019	12110	16226	16226					0.0521522472874949
GEFAKVLEL	9	Unmodified	_GEFAKVLEL_					0	0	0		nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;ENSG00000105568|ENST00000322088|PPP2R1A	nc|ENSG00000137713|P30154-3|PPP2R1B	nc|ENSG00000137713|P30154-3|PPP2R1B	MULTI-MSMS	A375_MHC_IP_R2	2	503.2828674316406	2	503.2844	1004.55425	-0.54747	-0.00027553	0.17476	8.7952E-05	-0.37271	-0.00018758	503.2843325293038	90.534	1.0149	91.268	90.956	91.97	0.7345					48	19	4	0	0	0	0.0095341	1	34507	34507		96.936	0	1	15902000			16582	14629	12019	12110	16227	16227					0.0521522472874949
GEFDSLLQW	9	Unmodified	_GEFDSLLQW_					0	0	0		nc|ENSG00000082512|O00463-3|TRAF5;ENSG00000082512|ENST00000261464|TRAF5;nc|ENSG00000082512|O00463-2|TRAF5	nc|ENSG00000082512|O00463-3|TRAF5	nc|ENSG00000082512|O00463-3|TRAF5	MSMS	A375_MHC_IP_R2	2	547.7015380859375	2	547.761289	1093.50803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.73	1	131.92	131.42	132.42	0.18953								0	0	0	0.046243	1	51816	51816		54.774	14.816	1				16583	1761	12020	12111	16228	16228					-0.034988401733244245
GEFEEFSRRIY	11	Unmodified	_GEFEEFSRRIY_					0	0	0		ENST00000525183.1_1_11:75848287-75852454:+|nuORF;nc|ENSG00000198382|Q9P2Y5-2|UVRAG;ENSG00000198382|ENST00000356136|UVRAG	ENST00000525183.1_1_11:75848287-75852454:+|nuORF	ENST00000525183.1_1_11:75848287-75852454:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	478.6999206542969	3	478.233369	1431.67828	-0.60243	-0.0002881	-0.37506	-0.00017937	-0.9775	-0.00046747	478.2331925066406	65.608	0.20318	65.608	65.514	65.717	0					5	3	2	0	0	0	0.99759	1	23728	23728		1.5231	1.4398	1	1317200			16584	9262	12021	12112	16229	16229					-0.020293492417067682
GEFFKQIGI	9	Unmodified	_GEFFKQIGI_					0	0	0		nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	MULTI-SECPEP	A375_MHC_IP_R2	2	520.184326171875	2	519.784567	1037.55458	-0.55461	-0.00028828	-1.2091	-0.00062845	-1.7637	-0.00091672	519.7842917883324	90.692	0.60692	91.427	91.211	91.818	0.7345					24	11	4	0	0	0	0.27742	1	34532	34532		43.772	32.948	1	2647300			16585	9982	12022	12113	16230	16230					0.037306444486148393
GEFGGFYSVRG	11	Unmodified	_GEFGGFYSVRG_					0	0	0		ENST00000398588.2_1_6:58446590-58447106:-|nuORF	ENST00000398588.2_1_6:58446590-58447106:-|nuORF	ENST00000398588.2_1_6:58446590-58447106:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	588.681396484375	2	588.277638	1174.54072	-0.14176	-8.3392E-05	1.2395	0.00072917	1.0978	0.00064578	588.2781853213066	72.499	0.91147	72.499	72.069	72.98	0					26	17	2	0	0	0	0.59376	1	26310	26310		23.801	6.6882	1	3776600			16586	11522	12023	12114	16231	16231					-0.03956633050484015
GEFGGFYSVRG	11	Unmodified	_GEFGGFYSVRG_					0	0	0		ENST00000398588.2_1_6:58446590-58447106:-|nuORF	ENST00000398588.2_1_6:58446590-58447106:-|nuORF	ENST00000398588.2_1_6:58446590-58447106:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	588.6771240234375	2	588.277638	1174.54072	-0.86055	-0.00050624	2.0218	0.0011894	1.1612	0.00068313	588.2782803551718	71.736	1.0114	72.471	72.111	73.122	0.73421					27	19	2	0	0	0	0.37785	1	27226	27226		40.725	14.457	1	4082400			16587	11522	12023	12114	16232	16232					-0.03956633050484015
GEFGNVTRW	9	Unmodified	_GEFGNVTRW_					0	0	0		ENST00000486103.6_1_17:58031378-58035783:-|nuORF;ENSG00000189050|ENST00000305783|RNFT1	ENST00000486103.6_1_17:58031378-58035783:-|nuORF	ENST00000486103.6_1_17:58031378-58035783:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	533.6586303710938	2	533.259248	1064.50394	-0.59305	-0.00031625	-0.40819	-0.00021767	-1.0012	-0.00053392	533.2593760125552	63.266	0.66565	63.266	62.863	63.529	0					37	12	4	0	0	0	0.13728	2	22861	22800;22861		43.982	23.528	1	5049000			16588	8955	12024	12115	16233;16234	16234					-0.025728848763719725
GEFGNVTRW	9	Unmodified	_GEFGNVTRW_					0	0	0		ENST00000486103.6_1_17:58031378-58035783:-|nuORF;ENSG00000189050|ENST00000305783|RNFT1	ENST00000486103.6_1_17:58031378-58035783:-|nuORF	ENST00000486103.6_1_17:58031378-58035783:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	533.65869140625	2	533.259248	1064.50394	-0.84802	-0.00045221	-0.014572	-7.7706E-06	-0.86259	-0.00045998	533.259167086309	62.526	1.8201	63.268	61.967	63.788	0.74263					52	35	3	0	0	0	0.095851	2	23677	23625;23677		51.415	29.669	1	4537100			16589	8955	12024	12115	16235;16236	16236					-0.025728848763719725
GEFKQPKQF	9	Unmodified	_GEFKQPKQF_					0	0	0		ENSG00000135999|ENST00000258484|EPC2	ENSG00000135999|ENST00000258484|EPC2	ENSG00000135999|ENST00000258484|EPC2	MULTI-SECPEP	A375_MHC_IP_R2	2	554.207763671875	2	554.792924	1107.57129	-1.2166	-0.00067498	1.5657	0.00086866	0.34911	0.00019368	555.2953710472955	25.941	0.35587	26.601	26.398	26.754	0.65992					12	6	3	0	0	0	0.41731	1	8747	8747		24.991	11.085	1	3471600			16590	4738	12025	12116	16237	16237					0.021811453345662812
GEFLGDNDKF	10	Unmodified	_GEFLGDNDKF_					0	0	0		ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-MSMS	A375_MHC_IP_R1	1	571.6737670898438	2	571.261653	1140.50875	-0.17261	-9.8604E-05	0.13618	7.7796E-05	-0.036426	-2.0809E-05	571.2617455339715	62.788	0.46069	62.788	62.557	63.018	0					18	8	3	0	0	0	0.29801	1	22666	22666		40.239	5.8375	1	1643300			16591	1420	12026	12117	16238	16238					-0.05588045524291374
GEFLGDNDKF	10	Unmodified	_GEFLGDNDKF_					0	0	0		ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-SECPEP	A375_MHC_IP_R2	2	571.6737060546875	2	571.261653	1140.50875	-0.50287	-0.00028727	-0.17722	-0.00010124	-0.68009	-0.00038851	571.2613838925545	62.085	0.35463	62.828	62.622	62.976	0.74263					11	6	2	0	0	0	0.62001	1	23523	23523		27.223	0	1	1235900			16592	1420	12026	12117	16239	16239					-0.05588045524291374
GEFLGMKGF	9	Oxidation (M)	_GEFLGM(Oxidation (M))KGF_		GEFLGM(1)KGF		GEFLGM(42)KGF	0	0	1		ENSG00000137207|ENST00000372422|YIPF3;ENST00000460547.6_1_6:43481320-43483845:-|nuORF;ENST00000510102.5_1_6:43481178-43483845:-|nuORF;ENST00000460903.2_1_6:43483331-43484545:-|nuORF;ENST00000502714.1_1_6:43481208-43483845:-|nuORF	ENSG00000137207|ENST00000372422|YIPF3	ENSG00000137207|ENST00000372422|YIPF3	MULTI-MSMS	A375_MHC_IP_R1	1	501.1780700683594	2	501.241678	1000.4688	-0.40966	-0.00020534	-0.15045	-7.541E-05	-0.5601	-0.00028075	501.24149495888946	87.676	1.4742	87.676	86.629	88.103	0					43	28	3	0	0	0	0.14922	2	32156	32156;32176		41.84	24.897	1	4781400			16593	4869	12027	12118	16240;16241	16240		258			-0.031412637285257006
GEFLGMKGF	9	Oxidation (M)	_GEFLGM(Oxidation (M))KGF_		GEFLGM(1)KGF		GEFLGM(42)KGF	0	0	1		ENSG00000137207|ENST00000372422|YIPF3;ENST00000460547.6_1_6:43481320-43483845:-|nuORF;ENST00000510102.5_1_6:43481178-43483845:-|nuORF;ENST00000460903.2_1_6:43483331-43484545:-|nuORF;ENST00000502714.1_1_6:43481208-43483845:-|nuORF	ENSG00000137207|ENST00000372422|YIPF3	ENSG00000137207|ENST00000372422|YIPF3	MULTI-MSMS	A375_MHC_IP_R2	2	501.64141845703125	2	501.241678	1000.4688	-0.47395	-0.00023756	0.60952	0.00030551	0.13557	6.7951E-05	501.24179685044345	86.95	1.2218	87.683	86.845	88.067	0.733					42	23	3	0	0	0	0.14922	1	33027	33027		41.84	11.615	1	5513600			16594	4869	12027	12118	16242	16242		258			-0.031412637285257006
GEFLGMKGF	9	Unmodified	_GEFLGMKGF_					0	0	0		ENSG00000137207|ENST00000372422|YIPF3;ENST00000460547.6_1_6:43481320-43483845:-|nuORF;ENST00000510102.5_1_6:43481178-43483845:-|nuORF;ENST00000460903.2_1_6:43483331-43484545:-|nuORF;ENST00000502714.1_1_6:43481208-43483845:-|nuORF	ENSG00000137207|ENST00000372422|YIPF3	ENSG00000137207|ENST00000372422|YIPF3	MULTI-SECPEP	A375_MHC_IP_R1	1	493.1015319824219	2	493.244221	984.473888	-0.36335	-0.00017922	-0.14474	-7.1392E-05	-0.50809	-0.00025061	493.2442368855498	87.705	1.1705	87.705	87.34	88.51	0					46	22	4	0	0	0	0.28216	1	32115	32115		49.933	34.165	1	19264000			16595	4869	12027	12119	16243	16243					-0.018969598659168696
GEFLGMKGF	9	Unmodified	_GEFLGMKGF_					0	0	0		ENSG00000137207|ENST00000372422|YIPF3;ENST00000460547.6_1_6:43481320-43483845:-|nuORF;ENST00000510102.5_1_6:43481178-43483845:-|nuORF;ENST00000460903.2_1_6:43483331-43484545:-|nuORF;ENST00000502714.1_1_6:43481208-43483845:-|nuORF	ENSG00000137207|ENST00000372422|YIPF3	ENSG00000137207|ENST00000372422|YIPF3	MULTI-SECPEP	A375_MHC_IP_R2	2	493.47064208984375	2	493.244221	984.473888	-0.37849	-0.00018669	0.037245	1.8371E-05	-0.34125	-0.00016832	493.2443093218524	86.926	0.96298	87.659	87.255	88.218	0.733					42	18	4	0	0	0	0.059859	1	32985	32985		81.89	57.216	1	19265000			16596	4869	12027	12119	16244	16244					-0.018969598659168696
GEFLGNRQKQF	11	Unmodified	_GEFLGNRQKQF_					0	0	0		nc|ENSG00000144711|Q6DN90-2|IQSEC1;nc|ENSG00000144711|Q6DN90|IQSEC1;ENSG00000144711|ENST00000613206|IQSEC1;ENSG00000124313|ENST00000642864|IQSEC2;nc|ENSG00000124313|Q5JU85-3|IQSEC2	nc|ENSG00000144711|Q6DN90-2|IQSEC1;ENSG00000124313|ENST00000642864|IQSEC2	ENSG00000124313|ENST00000642864|IQSEC2	MULTI-MSMS	A375_MHC_IP_R2	2	442.298095703125	3	441.898321	1322.67313	-0.79591	-0.00035171	0.31886	0.0001409	-0.47705	-0.00021081	441.89846978365426	33.99	0.40421	34.743	34.5	34.904	0.75225					13	7	3	0	0	0	0.73016	1	12278	12278		8.7518	0.80638	1	3476500			16597	3893;5506	12028	12120	16245	16245					0.024703916863018094
GEFLHKKLF	9	Unmodified	_GEFLHKKLF_					0	0	0		nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1	nc|ENSG00000118007|Q8WVM7-2|STAG1	nc|ENSG00000118007|Q8WVM7-2|STAG1	MULTI-MSMS	A375_MHC_IP_R1	1	373.9499206542969	3	373.550082	1117.62842	0.17967	6.7116E-05	0.86296	0.00032236	1.0426	0.00038948	373.55008800198146	46.98	0.66676	46.98	46.596	47.263	0					31	12	5	0	0	0	0.38603	1	16534	16534		23.79	15.844	1	3482000			16598	3521	12029	12121	16246	16246					0.07430612610937715
GEFLHKKLF	9	Unmodified	_GEFLHKKLF_					0	0	0		nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1	nc|ENSG00000118007|Q8WVM7-2|STAG1	nc|ENSG00000118007|Q8WVM7-2|STAG1	MULTI-SECPEP	A375_MHC_IP_R2	2	373.95001220703125	3	373.550082	1117.62842	0.42325	0.00015811	-0.084797	-3.1676E-05	0.33846	0.00012643	373.5499629551852	45.861	0.65385	46.626	46.252	46.906	0.76518					17	7	3	0	0	0	0.60917	1	17178	17178		23.79	13.639	1	4153200			16599	3521	12029	12121	16247	16247					0.07430612610937715
GEFLVVDAPYV	11	Unmodified	_GEFLVVDAPYV_					0	0	0			REV__nc|ENSG00000130717|Q9HA47-2|UCK1	REV__nc|ENSG00000130717|Q9HA47-2|UCK1	MSMS	A375_MHC_IP_R1	1	403.6110534667969	3	403.544773	1207.61249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.228	1	54.228	53.728	54.728	0								0	0	0	0.16258	1	19351	19351		2.4348	0	1		+		16600	18558	12030	12122	16248	16248					0.016988615833724907
GEFPNGFSRKR	11	Unmodified	_GEFPNGFSRKR_					0	0	0			REV__nc|ENSG00000110931|Q96RR4-7|CAMKK2	REV__nc|ENSG00000110931|Q96RR4-7|CAMKK2	MULTI-SECPEP	A375_MHC_IP_R1	1	431.95916748046875	3	432.226549	1293.65782	-0.096964	-4.191E-05	3.0953	0.0013379	2.9983	0.0012959	432.56227735123406	55.866	0.25597	55.866	55.635	55.891	0					6	4	2	0	0	0	1.0004	1	19969	19969		0.40827	0	1	747610	+		16601	27172	12031	12123	16249	16249					0.022735248891194715
GEFQLLTNW	9	Unmodified	_GEFQLLTNW_					0	0	0			REV__ENST00000426028.2_1_9:29825693-29826221:-|nuORF	REV__ENST00000426028.2_1_9:29825693-29826221:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	554.6771850585938	2	554.277106	1106.53966	-0.63698	-0.00035306	-0.61706	-0.00034202	-1.254	-0.00069509	554.2764595156665	76.704	0.91624	76.704	76.37	77.286	0					46	17	3	0	0	0	0.31606	1	27928	27928		47.749	14.963	1	10300000	+		16602	24642	12032	12124	16250	16250					-0.00934847419421203
GEFQLLTNW	9	Unmodified	_GEFQLLTNW_					0	0	0			REV__ENST00000426028.2_1_9:29825693-29826221:-|nuORF	REV__ENST00000426028.2_1_9:29825693-29826221:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	554.6761474609375	2	554.277106	1106.53966	-0.76346	-0.00042317	-0.61535	-0.00034107	-1.3788	-0.00076424	554.2766962492875	75.906	0.91559	76.646	76.334	77.25	0.74052					40	17	3	0	0	0	0.0092471	1	28791	28791		103.35	10.188	1	10707000	+		16603	24642	12032	12124	16251	16251					-0.00934847419421203
GEFQLLTNW	9	Unmodified	_GEFQLLTNW_					0	0	0			REV__ENST00000426028.2_1_9:29825693-29826221:-|nuORF	REV__ENST00000426028.2_1_9:29825693-29826221:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	554.1282958984375	2	554.277106	1106.53966	-0.76346	-0.00042317	-0.61535	-0.00034107	-1.3788	-0.00076424	554.2766962492875	75.906	0.91559	76.646	76.334	77.25	0.74052					40	17	3	0	0	0	0.070665	1	28762	28762		78.728	8.396	1	10707000	+		16604	24642	12032	12124	16252	16252					-0.00934847419421203
GEFQTQHSY	9	Unmodified	_GEFQTQHSY_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	A375_MHC_IP_R1	1	549.1376953125	2	548.738345	1095.46214	-0.85833	-0.000471	0.17846	9.7927E-05	-0.67988	-0.00037307	548.7383618528381	26.139	0.55706	26.139	25.917	26.474	0					26	10	3	0	0	0	0.0042663	3	7733	7727;7733;7788		160.69	122.72	1	39495000			16605	2486	12033	12125	16253;16254;16255	16254					-0.08177485355554381
GEFQTQHSY	9	Unmodified	_GEFQTQHSY_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	A375_MHC_IP_R2	2	548.7109985351562	2	548.738345	1095.46214	-1.2372	-0.00067892	0.4181	0.00022943	-0.81914	-0.00044949	548.7385054991317	25.56	0.76391	26.22	25.838	26.602	0.65992					36	14	4	0	0	0	0.04447	2	8522	8522;8691		66.457	38.828	1	43294000			16606	2486	12033	12125	16256;16257	16256					-0.08177485355554381
GEFSEAIKAY	10	Unmodified	_GEFSEAIKAY_					0	0	0		ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	MULTI-MSMS	A375_MHC_IP_R1	1	558.1744995117188	2	557.774396	1113.53424	-0.60197	-0.00033577	0.20621	0.00011502	-0.39576	-0.00022074	557.774448810751	58.706	0.91573	58.706	58.43	59.346	0					45	17	4	0	0	0	0.0018419	3	21057	21057;21077;21181		140.63	100.68	1	26010000			16607	1049	12034	12126	16258;16259;16260	16258					-0.017985710018592727
GEFSEAIKAY	10	Unmodified	_GEFSEAIKAY_					0	0	0		ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	MULTI-MSMS	A375_MHC_IP_R2	2	558.1738891601562	2	557.774396	1113.53424	-1.0055	-0.00056082	-0.32681	-0.00018228	-1.3323	-0.00074311	557.7741969463043	57.957	0.91116	58.706	58.427	59.338	0.74894					49	17	4	0	0	0	0.0018419	1	21883	21883		140.63	100.68	1	26560000			16608	1049	12034	12126	16261	16261					-0.017985710018592727
GEFSSGRKW	9	Unmodified	_GEFSSGRKW_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;nc|ENSG00000149262|Q96HW7-3|INTS4;ENST00000433818.6_1_11:77629258-77692594:-|nuORF;nc|ENSG00000149262|Q96HW7-2|INTS4;ENST00000587624.5_1_7:64601607-64646883:+|nuORF	ENSG00000149262|ENST00000534064|INTS4;ENST00000587624.5_1_7:64601607-64646883:+|nuORF	ENSG00000149262|ENST00000534064|INTS4	MULTI-MSMS	A375_MHC_IP_R1	1	527.6590576171875	2	527.259248	1052.50394	-0.78267	-0.00041267	0.54239	0.00028598	-0.24028	-0.00012669	527.2595511616811	25.979	1.1656	25.979	25.613	26.779	0					62	22	4	0	0	0	0.007896	1	7678	7678		129.77	62.428	1	29736000			16609	5794;13748	12035	12127	16262	16262					-0.02020884876378659
GEFSSGRKW	9	Unmodified	_GEFSSGRKW_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;nc|ENSG00000149262|Q96HW7-3|INTS4;ENST00000433818.6_1_11:77629258-77692594:-|nuORF;nc|ENSG00000149262|Q96HW7-2|INTS4;ENST00000587624.5_1_7:64601607-64646883:+|nuORF	ENSG00000149262|ENST00000534064|INTS4;ENST00000587624.5_1_7:64601607-64646883:+|nuORF	ENSG00000149262|ENST00000534064|INTS4	MULTI-SECPEP	A375_MHC_IP_R1	1	352.24176025390625	3	351.841924	1052.50394	-0.39457	-0.00013883	0.11512	4.0503E-05	-0.27945	-9.8323E-05	351.8419033116569	25.991	0.75894	25.991	25.765	26.524	0					38	14	4	0	0	0	0.31606	1	7667	7667		37.075	13.054	1	26909000			16610	5794;13748	12035	12127	16263	16263					-0.02020884876378659
GEFSSGRKW	9	Unmodified	_GEFSSGRKW_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;nc|ENSG00000149262|Q96HW7-3|INTS4;ENST00000433818.6_1_11:77629258-77692594:-|nuORF;nc|ENSG00000149262|Q96HW7-2|INTS4;ENST00000587624.5_1_7:64601607-64646883:+|nuORF	ENSG00000149262|ENST00000534064|INTS4;ENST00000587624.5_1_7:64601607-64646883:+|nuORF	ENSG00000149262|ENST00000534064|INTS4	MULTI-SECPEP	A375_MHC_IP_R2	2	352.2416076660156	3	351.841924	1052.50394	-0.67315	-0.00023684	0.17763	6.2498E-05	-0.49552	-0.00017435	351.8419168337792	25.359	0.71202	26.002	25.568	26.28	0.64368					35	13	4	0	0	0	0.11711	1	8468	8468		55.235	31.214	1	29341000			16611	5794;13748	12035	12127	16264	16264					-0.02020884876378659
GEFSSGRKW	9	Unmodified	_GEFSSGRKW_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;nc|ENSG00000149262|Q96HW7-3|INTS4;ENST00000433818.6_1_11:77629258-77692594:-|nuORF;nc|ENSG00000149262|Q96HW7-2|INTS4;ENST00000587624.5_1_7:64601607-64646883:+|nuORF	ENSG00000149262|ENST00000534064|INTS4;ENST00000587624.5_1_7:64601607-64646883:+|nuORF	ENSG00000149262|ENST00000534064|INTS4	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6587524414062	2	527.259248	1052.50394	-0.92	-0.00048508	0.53823	0.00028379	-0.38176	-0.00020129	527.2595617526988	25.33	0.60987	25.973	25.619	26.229	0.64368					32	11	4	0	0	0	0.011405	1	8486	8486		122.18	54.835	1	29796000			16612	5794;13748	12035	12127	16265	16265					-0.02020884876378659
GEFVAQFKF	9	Unmodified	_GEFVAQFKF_					0	0	0		ENSG00000170515|ENST00000303305|PA2G4;nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENST00000414718.1_1_20:12361512-12361782:+|nuORF	ENSG00000170515|ENST00000303305|PA2G4	ENSG00000170515|ENST00000303305|PA2G4	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1769409179688	2	536.776742	1071.53893	-0.67324	-0.00036138	-0.24457	-0.00013128	-0.91781	-0.00049266	536.7767996248533	93.742	0.5071	93.742	93.533	94.041	0					18	9	3	0	0	0	0.55534	1	34478	34478		41.84	41.84	1	1470800			16613	7515	12036	12128	16266	16266					0.006023579315751704
GEFVAQFKF	9	Unmodified	_GEFVAQFKF_					0	0	0		ENSG00000170515|ENST00000303305|PA2G4;nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENST00000414718.1_1_20:12361512-12361782:+|nuORF	ENSG00000170515|ENST00000303305|PA2G4	ENSG00000170515|ENST00000303305|PA2G4	MULTI-SECPEP	A375_MHC_IP_R2	2	537.14990234375	2	536.776742	1071.53893	-0.79474	-0.0004266	0.6158	0.00033055	-0.17894	-9.6051E-05	536.7769292930594	92.945	0.55801	93.684	93.546	94.104	0.73902					12	10	2	0	0	0	0.61758	1	35308	35308		29.082	29.082	1	1370100			16614	7515	12036	12128	16267	16267					0.006023579315751704
GEFVITFPRAY	11	Unmodified	_GEFVITFPRAY_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENST00000465402.1_1_X:53230656-53239709:-|nuORF;ENST00000492117.1_1_Y:21877982-21883284:-|nuORF;ENST00000481369.1_1_X:53230656-53231176:-|nuORF;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;ENST00000497100.5_1_X:53227940-53240837:-|nuORF;nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D	ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000126012|P41229-2|KDM5C	MULTI-SECPEP	A375_MHC_IP_R1	1	650.7410888671875	2	650.340238	1298.66592	-0.11544	-7.5078E-05	0.35567	0.0002313	0.24022	0.00015623	650.3405217871973	107.52	0.46003	107.52	107.29	107.75	0					16	8	2	0	0	0	0.73549	1	39444	39444		39.213	29.062	1	2456600			16615	4020;3458;1013	12037	12129	16268	16268					0.028536590859175703
GEFVITFPRAY	11	Unmodified	_GEFVITFPRAY_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENST00000465402.1_1_X:53230656-53239709:-|nuORF;ENST00000492117.1_1_Y:21877982-21883284:-|nuORF;ENST00000481369.1_1_X:53230656-53231176:-|nuORF;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;ENST00000497100.5_1_X:53227940-53240837:-|nuORF;nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D	ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000126012|P41229-2|KDM5C	MULTI-MSMS	A375_MHC_IP_R2	2	650.7417602539062	2	650.340238	1298.66592	-0.79311	-0.00051579	0.45658	0.00029693	-0.33653	-0.00021886	650.3405942496191	106.73	0.5083	107.49	107.19	107.7	0.75977					15	9	2	0	0	0	0.16416	2	40319	40304;40319		59.052	41.94	1	2713300			16616	4020;3458;1013	12037	12129	16269;16270	16270					0.028536590859175703
GEFVTTIAY	9	Unmodified	_GEFVTTIAY_					0	0	0		ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1	ENSG00000099956|ENST00000644036|SMARCB1	ENSG00000099956|ENST00000644036|SMARCB1	MULTI-SECPEP	A375_MHC_IP_R2	2	1000.8978271484375	1	1000.49859	999.491313	0.19071	0.00019081	-0.58401	-0.00058431	-0.3933	-0.0003935	1000.498073522612	94.048	0.50515	94.793	94.515	95.02	0.74474					14	9	2	0	0	0	0.50702	1	35813	35813		32.305	9.1571	1	3062200			16617	2096	12038	12130	16271	16271					-0.008453410593006083
GEGAIGSLDY	10	Unmodified	_GEGAIGSLDY_					0	0	0		ENSG00000198833|ENST00000435041|UBE2J1	ENSG00000198833|ENST00000435041|UBE2J1	ENSG00000198833|ENST00000435041|UBE2J1	MULTI-SECPEP	A375_MHC_IP_R1	1	981.8837280273438	1	981.452367	980.445091	0.30084	0.00029526	-0.82429	-0.000809	-0.52345	-0.00051374	981.4515074945674	72.481	0.50746	72.481	72.22	72.728	0					17	9	2	0	0	0	0.46496	1	26461	26461		41.956	20.419	1	3647000			16618	9340	12039	12131	16272	16272					-0.04591405961377859
GEGAIGSLDY	10	Unmodified	_GEGAIGSLDY_					0	0	0		ENSG00000198833|ENST00000435041|UBE2J1	ENSG00000198833|ENST00000435041|UBE2J1	ENSG00000198833|ENST00000435041|UBE2J1	MULTI-MATCH	A375_MHC_IP_R2	2		1	981.452367	980.445091	-0.29029	-0.00028491	-0.81175	-0.0007967	-1.102	-0.0010816	981.4513979560318	71.807	0.50616	72.541	72.314	72.82	0.73421	0.029979	7.4145E-06	NaN	41.956	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4382500			16619	9340	12039	12131							-0.04591405961377859
GEGATERRP	9	Unmodified	_GEGATERRP_					0	0	0		ENST00000524644.5_1_16:30406793-30408660:+|nuORF;ENST00000320159.2_1_16:30406847-30408660:+|nuORF	ENST00000524644.5_1_16:30406793-30408660:+|nuORF	ENST00000524644.5_1_16:30406793-30408660:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	487.1763916015625	2	486.746505	971.478456	-0.14215	-6.9193E-05	-1.8477	-0.00089936	-1.9899	-0.00096855	486.7445722069965	56.091	0.50608	56.091	55.891	56.397	0					14	9	2	0	0	0	0.6656	1	20164	20164		10.074	0	1	698000			16620	10689	12040	12132	16273	16273					-0.008423593988140965
GEGEGQIW	8	Unmodified	_GEGEGQIW_					0	0	0		NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	875.7928466796875	1	875.389373	874.382096	-0.23169	-0.00020282	-0.22102	-0.00019348	-0.45271	-0.00039629	875.3894448950774	63.438	1.0243	63.438	62.914	63.939	0					47	19	3	0	0	0	0.1561	1	22847	22847		92.491	28.255	1	21859000			16621	4441	12041	12133	16274	16274					-0.0601192695876307
GEGEGQIW	8	Unmodified	_GEGEGQIW_					0	0	0		NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		1	875.389373	874.382096	-0.58017	-0.00050788	-0.18156	-0.00015893	-0.76173	-0.00066681	875.3894159414392	62.669	0.8623	63.412	62.925	63.788	0.74263	-0.013041	1.5592E-05	NaN	92.491	41	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20989000			16622	4441	12041	12133							-0.0601192695876307
GEGETLLKKW	10	Unmodified	_GEGETLLKKW_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.E2519Dfs*5|1|0.21|ENSG00000188906|chr12:40367737-40367738|-/CTTAG|frameshift_variant;ENST00000479187.5_1_12:40692272-40758932:+|nuORF	ENSG00000188906|ENST00000298910|LRRK2	ENSG00000188906|ENST00000298910|LRRK2	MULTI-MSMS	A375_MHC_IP_R1	1	387.9485168457031	3	387.548518	1159.62372	0.71683	0.00027781	-0.72037	-0.00027918	-0.0035399	-1.3719E-06	387.54823720896746	49.209	0.60715	49.209	48.933	49.54	0					22	11	2	0	0	0	0.19726	1	17379	17379		37.251	22.413	1	6288200			16623	8945	12042	12134	16275	16275					0.05029683677526009
GEGETLLKKW	10	Unmodified	_GEGETLLKKW_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.E2519Dfs*5|1|0.21|ENSG00000188906|chr12:40367737-40367738|-/CTTAG|frameshift_variant;ENST00000479187.5_1_12:40692272-40758932:+|nuORF	ENSG00000188906|ENST00000298910|LRRK2	ENSG00000188906|ENST00000298910|LRRK2	MULTI-MSMS	A375_MHC_IP_R1	1	581.2197265625	2	580.819138	1159.62372	0.27882	0.00016195	-0.4917	-0.00028559	-0.21287	-0.00012364	580.8190811085702	49.209	0.70933	49.209	48.882	49.591	0					19	13	2	0	0	0	0.0069514	1	17411	17411		104.48	76.856	1	3387600			16624	8945	12042	12134	16276	16276					0.05029683677526009
GEGETLLKKW	10	Unmodified	_GEGETLLKKW_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.E2519Dfs*5|1|0.21|ENSG00000188906|chr12:40367737-40367738|-/CTTAG|frameshift_variant;ENST00000479187.5_1_12:40692272-40758932:+|nuORF	ENSG00000188906|ENST00000298910|LRRK2	ENSG00000188906|ENST00000298910|LRRK2	MULTI-MSMS	A375_MHC_IP_R2	2	387.9486389160156	3	387.548518	1159.62372	-0.096333	-3.7334E-05	0.3865	0.00014979	0.29017	0.00011245	387.5485791822991	48.28	0.7046	49.037	48.729	49.434	0.75737					33	13	4	0	0	0	0.1298	1	18117	18117		43.477	27.202	1	6999600			16625	8945	12042	12134	16277	16277					0.05029683677526009
GEGETLLKKW	10	Unmodified	_GEGETLLKKW_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.E2519Dfs*5|1|0.21|ENSG00000188906|chr12:40367737-40367738|-/CTTAG|frameshift_variant;ENST00000479187.5_1_12:40692272-40758932:+|nuORF	ENSG00000188906|ENST00000298910|LRRK2	ENSG00000188906|ENST00000298910|LRRK2	MULTI-SECPEP	A375_MHC_IP_R2	2	581.2192993164062	2	580.819138	1159.62372	-0.27017	-0.00015692	0.60409	0.00035087	0.33392	0.00019395	580.8193591702365	48.267	0.55399	49.024	48.829	49.383	0.75737					18	10	3	0	0	0	0.025827	1	18138	18138		100.71	56.727	1	2263500			16626	8945	12042	12134	16278	16278					0.05029683677526009
GEGETVQHF	9	Unmodified	_GEGETVQHF_					0	0	0		nc|ENSG00000205189|Q96DT7-3|ZBTB10;nc|ENSG00000205189|Q96DT7-2|ZBTB10;ENSG00000205189|ENST00000455036|ZBTB10	nc|ENSG00000205189|Q96DT7-3|ZBTB10	nc|ENSG00000205189|Q96DT7-3|ZBTB10	MULTI-MSMS	A375_MHC_IP_R2	2	503.19390869140625	2	502.227613	1002.44067	-0.54458	-0.0002735	-0.24568	-0.00012339	-0.79027	-0.00039689	502.22750960010205	27.346	0.45772	28.025	27.843	28.301	0.67857					18	8	3	0	0	0	0.53367	1	9322	9322		18.146	3.5647	1	6959500			16627	9499	12043	12135	16279	16279					-0.06044870384278056
GEGFGPHD	8	Unmodified	_GEGFGPHD_					0	0	0			REV__nc|ENSG00000127152|Q9C0K0-2|BCL11B	REV__nc|ENSG00000127152|Q9C0K0-2|BCL11B	MULTI-MSMS	A375_MHC_IP_R1	1	815.3167114257812	1	815.331858	814.324582	-0.39373	-0.00032102	-0.8477	-0.00069116	-1.2414	-0.0010122	815.3311993080379	125.52	1.3577	125.52	124.54	125.9	0					32	26	2	0	0	0	0.7779	1	47826	47826		2.5775	0	1	2116999999.9999998	+		16628	18413	12044	12136	16280	16280					-0.09000769164345002
GEGFKDFQPRG	11	Unmodified	_GEGFKDFQPRG_					0	0	0			REV__ENSG00000112249|ENST00000369162|ASCC3	REV__ENSG00000112249|ENST00000369162|ASCC3	MULTI-SECPEP	A375_MHC_IP_R2	2	618.7102661132812	2	619.301644	1236.58874	-0.84914	-0.00052588	0.14807	9.1698E-05	-0.70108	-0.00043418	619.3013302680363	41.382	0.30286	42.157	42.047	42.35	0.77451					7	5	2	0	0	0	0.92455	1	15325	15325		16.149	4.6544	1	1014600	+		16629	17721	12045	12137	16281	16281					-0.020095591304425398
GEGGLTESW	9	Unmodified	_GEGGLTESW_					0	0	0		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	A375_MHC_IP_R1	1	935.4650268554688	1	935.410502	934.403226	0.4717	0.00044123	-0.49558	-0.00046357	-0.023883	-2.234E-05	935.4101655045796	69.577	0.35496	69.577	69.427	69.782	0					11	6	2	0	0	0	0.030038	1	25269	25269		74.929	40.527	1	2042000			16630	9684	12046	12138	16282	16282					-0.06659961649893376
GEGGLTESW	9	Unmodified	_GEGGLTESW_					0	0	0		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MATCH	A375_MHC_IP_R2	2		1	935.410502	934.403226	-0.13915	-0.00013016	-0.04947	-4.6274E-05	-0.18862	-0.00017644	935.4106399345155	68.916	0.55894	69.651	69.373	69.932	0.73511	0.037066	0.00022259	NaN	74.929	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2449800			16631	9684	12046	12138							-0.06659961649893376
GEGGPHSLS	9	Unmodified	_GEGGPHSLS_					0	0	0			REV__SHROOM1|p.P263Rfs*23|1|0.78|ENSG00000164403|chr5:132825353-132825353|G/-|frameshift_variant	REV__SHROOM1|p.P263Rfs*23|1|0.78|ENSG00000164403|chr5:132825353-132825353|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	420.31011962890625	2	420.695949	839.377345	0.53235	0.00022396	-1.0692	-0.00044979	-0.53681	-0.00022583	420.69550342999395	48.856	0.35438	48.856	48.629	48.983	0					9	6	2	0	0	0	0.71541	1	17179	17179		7.2892	2.5332	1	1181100	+		16632	20492	12047	12139	16283	16283					-0.04876811101507883
GEGLGERCY	9	Unmodified	_GEGLGERCY_					0	0	0		nc|ENSG00000197324|Q7Z4F1-2|LRP10;ENSG00000197324|ENST00000359591|LRP10	nc|ENSG00000197324|Q7Z4F1-2|LRP10	nc|ENSG00000197324|Q7Z4F1-2|LRP10	MULTI-SECPEP	A375_MHC_IP_R1	1	492.1634826660156	2	492.216192	982.41783	-0.38717	-0.00019057	-0.21688	-0.00010675	-0.60405	-0.00029732	492.21612162581675	41.995	0.50793	41.995	41.725	42.233	0					12	9	2	0	0	0	0.73008	1	14586	14586		12.241	4.3305	1	902430			16633	9145	12048	12140	16284	16284					-0.07408212773418654
GEGLMIVDGV	10	Unmodified	_GEGLMIVDGV_					0	0	0		DDX3X|p.A68Rfs*153|1|0.89|ENSG00000215301|chrX:41341534-41341534|G/-|frameshift_variant	DDX3X|p.A68Rfs*153|1|0.89|ENSG00000215301|chrX:41341534-41341534|G/-|frameshift_variant	DDX3X|p.A68Rfs*153|1|0.89|ENSG00000215301|chrX:41341534-41341534|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	495.6521301269531	2	495.252243	988.489932	-1.0139	-0.00050213	2.8738	0.0014233	1.8599	0.00092114	495.25253556498205	53.272	1.6832	54.023	53.233	54.916	0.75105					50	32	2	0	0	0	0.88918	1	20218	20218		13.042	7.282	1	3108500			16634	726	12049	12141	16285	16285					-0.004772984196733887
GEGPEVDVNL	10	Unmodified	_GEGPEVDVNL_					0	0	0		AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.P2986Afs*6|1|0.42|ENSG00000124942|chr11:62525462-62525463|-/A|frameshift_variant;AHNAK|p.F4329Lfs*50|1|0.43|ENSG00000124942|chr11:62521430-62521430|G/-|frameshift_variant;AHNAK|p.M4461Afs*2|1|0.03|ENSG00000124942|chr11:62521035-62521036|AT/-|frameshift_variant	AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	514.6448974609375	2	514.748379	1027.4822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.235	1	45.004	44.504	45.504	0.7691								0	0	0	0.15207	1	16507	16507		13.906	0.86358	1				16635	87	12050	12142	16286	16286					-0.030437344156325707
GEGQFATVY	9	Unmodified	_GEGQFATVY_					0	0	0		ENST00000512687.5_1_5:68530748-68551520:+|nuORF;ENSG00000134058|ENST00000256443|CDK7	ENST00000512687.5_1_5:68530748-68551520:+|nuORF	ENST00000512687.5_1_5:68530748-68551520:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	971.846923828125	1	971.446888	970.439611	0.025082	2.4365E-05	-0.30796	-0.00029916	-0.28287	-0.0002748	971.4464519444375	64.118	0.50868	64.858	64.648	65.157	0.74022					15	9	2	0	0	0	0.018261	1	24313	24313		85.642	53.336	1	1668700			16636	4547	12051	12143	16287	16287					-0.04679084753183815
GEGQFATVY	9	Unmodified	_GEGQFATVY_					0	0	0		ENST00000512687.5_1_5:68530748-68551520:+|nuORF;ENSG00000134058|ENST00000256443|CDK7	ENST00000512687.5_1_5:68530748-68551520:+|nuORF	ENST00000512687.5_1_5:68530748-68551520:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	971.446888	970.439611	0.057514	5.5872E-05	0.024163	2.3473E-05	0.081677	7.9345E-05	971.4467668799907	64.841	0.40797	64.841	64.597	65.005	0	-0.0082628	8.9612E-05	NaN	85.642	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1934300			16637	4547	12051	12143							-0.04679084753183815
GEGSDRPNNTW	11	Unmodified	_GEGSDRPNNTW_					0	0	0			REV__ANK1|p.D1157N|1|0.4|ENSG00000029534|chr8:41693961-41693961|C/T|missense_variant	REV__ANK1|p.D1157N|1|0.4|ENSG00000029534|chr8:41693961-41693961|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	616.7251586914062	2	616.768165	1231.52178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.336	1	67.072	66.572	67.572	0.73631								0	0	0	0.15694	1	25136	25136		16.149	0.90062	1		+		16638	15398	12052	12144	16288	16288					-0.08472214412199719
GEGSHWIQSL	10	Unmodified	_GEGSHWIQSL_					0	0	0		ENST00000526995.5_1_11:36531604-36531790:-|nuORF	ENST00000526995.5_1_11:36531604-36531790:-|nuORF	ENST00000526995.5_1_11:36531604-36531790:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	558.6507568359375	2	557.269813	1112.52507	-0.45215	-0.00025197	-0.89198	-0.00049707	-1.3441	-0.00074904	557.2696418636558	79.332	0.86909	79.332	78.909	79.778	0					38	14	4	0	0	0	0.69306	1	28940	28940		13.906	3.8321	1	13446000			16639	13090	12053	12145	16289	16289					-0.026689195675317023
GEGSPDQDHGI	11	Unmodified	_GEGSPDQDHGI_					0	0	0			REV__ENST00000475711.5_1_3:138067736-138091710:+|nuORF	REV__ENST00000475711.5_1_3:138067736-138091710:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	556.6368408203125	2	556.236167	1110.45778	-0.87526	-0.00048685	2.3007	0.0012797	1.4254	0.00079286	556.2383670092655	41.562	1.0681	42.336	41.794	42.862	0.77451					33	20	3	0	0	0	0.97182	1	15420	15420		18.373	2.224	1	4220000	+		16640	25174	12054	12146	16290	16290					-0.09302994569134171
GEGTETKTPKL	11	Unmodified	_GEGTETKTPKL_					0	0	0			REV__ENST00000362042.7_1_17:46137022-46137280:+|nuORF	REV__ENST00000362042.7_1_17:46137022-46137280:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	581.2119750976562	2	580.81151	1159.60847	-0.11943	-6.9366E-05	1.0245	0.00059504	0.90507	0.00052567	580.811601101641	43.938	0.45482	44.707	44.53	44.985	0.7691					14	8	2	0	0	0	0.94168	1	16418	16418		4.1895	0	1	2725800	+		16641	23930	12055	12147	16291	16291					0.035047720896727697
GEGVGGRWTRW	11	Unmodified	_GEGVGGRWTRW_					0	0	0		ENST00000229329.6_1_12:22199202-22199379:+|nuORF	ENST00000229329.6_1_12:22199202-22199379:+|nuORF	ENST00000229329.6_1_12:22199202-22199379:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	421.27911376953125	3	420.879261	1259.61595	0.48257	0.0002031	-0.72725	-0.00030608	-0.24468	-0.00010298	420.8790051215296	48.603	0.50673	48.603	48.426	48.933	0					17	9	2	0	0	0	0.5363	1	17191	17191		28.271	12.732	1	2763300			16642	10133	12056	12148	16292	16292					-0.003470307994120958
GEHGDSSVPVW	11	Unmodified	_GEHGDSSVPVW_					0	0	0		nc|ENSG00000134333|P00338-4|LDHA;ENST00000538451.1_1_11:18424358-18428825:+|nuORF;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;nc|ENSG00000134333|P00338-5|LDHA;nc|ENSG00000134333|P00338-2|LDHA;ENSG00000166800|ENST00000280706|LDHAL6A;ENST00000394996.2_1_10:120692379-120692769:-|nuORF;ENSG00000171989|ENST00000307144|LDHAL6B	nc|ENSG00000134333|P00338-4|LDHA	nc|ENSG00000134333|P00338-4|LDHA	MSMS	A375_MHC_IP_R2	2	585.6633911132812	2	585.264727	1168.5149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.878	1	54.629	54.129	55.129	0.75105								0	0	0	0.0011001	1	20341	20341		69.105	35.002	1				16643	14610	12057	12149	16293	16293					-0.06261527292758728
GEHIFWTDW	9	Unmodified	_GEHIFWTDW_					0	0	0		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	A375_MHC_IP_R1	1	595.200439453125	2	595.766906	1189.51926	-0.011431	-6.81E-06	0.86138	0.00051318	0.84995	0.00050637	595.7670075389954	112.91	0.40555	112.91	112.59	112.99	0					10	7	2	0	0	0	0.76827	1	41333	41333		6.7232	0.51738	1	706920			16644	3844	12058	12150	16294	16294					-0.06792018079204354
GEHPGLSI	8	Unmodified	_GEHPGLSI_					0	0	0		nc|ENSG00000067066|P23497|SP100;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1	nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	A375_MHC_IP_R2	2	405.6108093261719	2	405.211235	808.407917	-0.047417	-1.9214E-05	-0.10842	-4.3934E-05	-0.15584	-6.3148E-05	405.21111480385406	40.309	0.5574	41.084	40.828	41.386	0.77451					15	10	2	0	0	0	0.31691	1	14923	14923		57.471	10.55	1	5280300			16645	14473	12059	12151	16295	16295					-0.003950327164830014
GEHTSPGHFF	10	Unmodified	_GEHTSPGHFF_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	A375_MHC_IP_R1	1	373.2770690917969	3	372.501679	1114.48321	0.51139	0.00019049	-0.54061	-0.00020138	-0.029218	-1.0884E-05	372.50150714883557	35.497	0.50944	35.497	35.218	35.727	0					13	9	2	0	0	0	0.9269	1	11834	11834		3.5871	3.1863	1	2550800			16646	7807	12060	12152	16296	16296					-0.0694547525604321
GEHTSPGHFF	10	Unmodified	_GEHTSPGHFF_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	A375_MHC_IP_R2	2	373.27685546875	3	372.501679	1114.48321	0.25551	9.5178E-05	-0.38786	-0.00014448	-0.13235	-4.9299E-05	372.50150359507643	34.632	0.4556	35.395	35.171	35.627	0.76338					18	8	3	0	0	0	0.92051	1	12518	12518		2.086	0.60411	1	3701500			16647	7807	12060	12152	16297	16297					-0.0694547525604321
GEIDGNKVTL	10	Unmodified	_GEIDGNKVTL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	A375_MHC_IP_R1	1	523.6793823242188	2	523.279846	1044.54514	-0.24271	-0.00012701	0.081204	4.2493E-05	-0.16151	-8.4513E-05	523.2797240727602	45.514	0.40352	45.514	45.334	45.738	0					16	7	3	0	0	0	0.051218	1	15954	15954		75.571	12.998	1	3565000			16648	3266	12061	12153	16298	16298					0.02464831372435583
GEIDGNKVTL	10	Unmodified	_GEIDGNKVTL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	A375_MHC_IP_R2	2	523.6791381835938	2	523.279846	1044.54514	-0.68176	-0.00035675	-0.39578	-0.0002071	-1.0775	-0.00056386	523.2795497890796	44.767	0.51149	45.536	45.289	45.8	0.7691					14	9	2	0	0	0	0.1298	1	16717	16717		57.249	3.4163	1	2087700			16649	3266	12061	12153	16299	16299					0.02464831372435583
GEIDGNKVTL	10	Unmodified	_GEIDGNKVTL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	523.279846	1044.54514	-0.68176	-0.00035675	-0.39578	-0.0002071	-1.0775	-0.00056386	523.2795497890796	44.767	0.51149	45.536	45.289	45.8	0.7691	0.010899	-0.00032833	NaN	75.571	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2087700			16650	3266	12061	12153							0.02464831372435583
GEIDHVHIL	9	Unmodified	_GEIDHVHIL_					0	0	0		ENSG00000183826|ENST00000481247|BTBD9	ENSG00000183826|ENST00000481247|BTBD9	ENSG00000183826|ENST00000481247|BTBD9	MULTI-SECPEP	A375_MHC_IP_R1	1	517.1769409179688	2	516.777274	1031.53999	-0.3801	-0.00019643	-0.071851	-3.7131E-05	-0.45195	-0.00023356	516.7773808938798	53.82	1.1152	53.82	53.555	54.67	0					45	21	4	0	0	0	0.010931	1	19178	19178		112.59	82.368	1	9698200			16651	8533	12062	12154	16300	16300					0.02548572300474916
GEIDHVHIL	9	Unmodified	_GEIDHVHIL_					0	0	0		ENSG00000183826|ENST00000481247|BTBD9	ENSG00000183826|ENST00000481247|BTBD9	ENSG00000183826|ENST00000481247|BTBD9	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1765747070312	2	516.777274	1031.53999	-1.2964	-0.00066996	0.412	0.00021291	-0.88442	-0.00045705	516.7774536117786	52.862	0.86397	53.613	53.284	54.147	0.75105					24	16	2	0	0	0	0.040439	1	20001	20001		81.613	53.126	1	9574700			16652	8533	12062	12154	16301	16301					0.02548572300474916
GEIDKAIKF	9	Unmodified	_GEIDKAIKF_					0	0	0		nc|ENSG00000155158|Q5VTQ0-7|TTC39B;ENST00000380853.1_1_9:15172019-15185442:-|nuORF;nc|ENSG00000155158|Q5VTQ0-5|TTC39B;nc|ENSG00000155158|Q5VTQ0-2|TTC39B;nc|ENSG00000155158|Q5VTQ0-6|TTC39B;ENSG00000155158|ENST00000512701|TTC39B;nc|ENSG00000155158|Q5VTQ0-3|TTC39B;nc|ENSG00000155158|Q5VTQ0-4|TTC39B;nc|ENSG00000155158|Q5VTQ0|TTC39B	nc|ENSG00000155158|Q5VTQ0-7|TTC39B	nc|ENSG00000155158|Q5VTQ0-7|TTC39B	MULTI-SECPEP	A375_MHC_IP_R1	1	511.1896057128906	2	510.78985	1019.56515	-0.53697	-0.00027428	-0.49107	-0.00025083	-1.028	-0.00052511	510.7892726578796	46.561	1.2184	46.561	45.941	47.159	0					56	23	3	0	0	0	0.13208	1	16309	16309		66.457	37.375	1	17210000			16653	6130	12063	12155	16302	16302					0.056146271030456774
GEIDKAIKF	9	Unmodified	_GEIDKAIKF_					0	0	0		nc|ENSG00000155158|Q5VTQ0-7|TTC39B;ENST00000380853.1_1_9:15172019-15185442:-|nuORF;nc|ENSG00000155158|Q5VTQ0-5|TTC39B;nc|ENSG00000155158|Q5VTQ0-2|TTC39B;nc|ENSG00000155158|Q5VTQ0-6|TTC39B;ENSG00000155158|ENST00000512701|TTC39B;nc|ENSG00000155158|Q5VTQ0-3|TTC39B;nc|ENSG00000155158|Q5VTQ0-4|TTC39B;nc|ENSG00000155158|Q5VTQ0|TTC39B	nc|ENSG00000155158|Q5VTQ0-7|TTC39B	nc|ENSG00000155158|Q5VTQ0-7|TTC39B	MULTI-SECPEP	A375_MHC_IP_R2	2	511.1893310546875	2	510.78985	1019.56515	-0.58144	-0.000297	-1.1726	-0.00059895	-1.754	-0.00089595	510.7887671785036	47.337	0.56153	48.099	47.867	48.429	0.76128					21	10	3	0	0	0	0.30133	1	17759	17759		43.982	22.445	1	4285200			16654	6130	12063	12155	16303	16303					0.056146271030456774
GEIDKVQYI	9	Unmodified	_GEIDKVQYI_					0	0	0		nc|ENSG00000068885|Q9P2H3-3|IFT80;nc|ENSG00000068885|Q9P2H3-2|IFT80;ENSG00000068885|ENST00000326448|IFT80	nc|ENSG00000068885|Q9P2H3-3|IFT80	nc|ENSG00000068885|Q9P2H3-3|IFT80	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1846313476562	2	532.784764	1063.55498	-0.54185	-0.00028869	-0.07337	-3.909E-05	-0.61522	-0.00032778	532.7847300872726	56.055	0.76192	56.055	55.533	56.295	0					28	14	3	0	0	0	0.010955	1	20049	20049		145.13	22.95	1	21192000			16655	14476	12064	12156	16304	16304					0.025740193777892273
GEIDKVQYI	9	Unmodified	_GEIDKVQYI_					0	0	0		nc|ENSG00000068885|Q9P2H3-3|IFT80;nc|ENSG00000068885|Q9P2H3-2|IFT80;ENSG00000068885|ENST00000326448|IFT80	nc|ENSG00000068885|Q9P2H3-3|IFT80	nc|ENSG00000068885|Q9P2H3-3|IFT80	MULTI-SECPEP	A375_MHC_IP_R2	2	533.1840209960938	2	532.784764	1063.55498	-0.81081	-0.00043199	1.8613	0.00099167	1.0505	0.00055968	532.7858749756814	55.358	0.81226	56.109	55.779	56.591	0.75075					34	15	3	0	0	0	0.013591	1	20870	20870		118.07	21.957	1	21495000			16656	14476	12064	12156	16305	16305					0.025740193777892273
GEIDLAKLKKF	11	Unmodified	_GEIDLAKLKKF_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	A375_MHC_IP_R1	1	421.26507568359375	3	421.255334	1260.74417	0.087662	3.6928E-05	0.032851	1.3839E-05	0.12051	5.0767E-05	421.25530955111486	55.705	0.86398	55.705	55.431	56.295	0					44	16	4	0	0	0	0.013697	2	19944	19902;19944		90.964	74.126	1	37801000			16657	2155	12065	12157	16306;16307	16307					0.12423091671121256
GEIDLAKLKKF	11	Unmodified	_GEIDLAKLKKF_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	A375_MHC_IP_R2	2	421.6551818847656	3	421.255334	1260.74417	-0.27133	-0.0001143	0.11896	5.0114E-05	-0.15237	-6.4185E-05	421.25532856468004	54.85	0.7142	55.601	55.32	56.034	0.75075					44	13	5	0	0	0	0.056403	2	20670	20644;20670		78.116	57.705	1	49641000			16658	2155	12065	12157	16308;16309	16309					0.12423091671121256
GEIDPLNRRF	10	Unmodified	_GEIDPLNRRF_					0	0	0		ENSG00000044446|ENST00000379942|PHKA2;nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1	ENSG00000044446|ENST00000379942|PHKA2;nc|ENSG00000067177|P46020-3|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	MULTI-MSMS	A375_MHC_IP_R1	1	406.619140625	3	406.219283	1215.63602	-0.31647	-0.00012856	0.32836	0.00013339	0.011889	4.8294E-06	406.2193958575622	50.647	0.66043	50.647	50.357	51.017	0					42	12	5	0	0	0	0.21149	1	17915	17915		48.073	31.798	1	35183000			16659	1185;1429	12066	12158	16310	16310					0.036827201405458254
GEIDPLNRRF	10	Unmodified	_GEIDPLNRRF_					0	0	0		ENSG00000044446|ENST00000379942|PHKA2;nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1	ENSG00000044446|ENST00000379942|PHKA2;nc|ENSG00000067177|P46020-3|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	MULTI-SECPEP	A375_MHC_IP_R1	1	609.2249145507812	2	608.825286	1215.63602	-0.33022	-0.00020105	-7.6172E-05	-4.6375E-08	-0.3303	-0.00020109	608.8253703022325	50.639	0.50727	50.639	50.408	50.915	0					23	9	3	0	0	0	0.91909	1	17943	17943		9.3831	3.6513	1	7256200			16660	1185;1429	12066	12158	16311	16311					0.036827201405458254
GEIDPLNRRF	10	Unmodified	_GEIDPLNRRF_					0	0	0		ENSG00000044446|ENST00000379942|PHKA2;nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1	ENSG00000044446|ENST00000379942|PHKA2;nc|ENSG00000067177|P46020-3|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	MULTI-MSMS	A375_MHC_IP_R2	2	406.6191711425781	3	406.219283	1215.63602	-0.23337	-9.4798E-05	0.033655	1.3671E-05	-0.19971	-8.1127E-05	406.21928916816853	49.914	0.81409	50.668	50.294	51.108	0.75406					49	15	5	0	0	0	0.11281	1	18710	18710		60.899	43.851	1	36163000			16661	1185;1429	12066	12158	16312	16312					0.036827201405458254
GEIDPLNRRF	10	Unmodified	_GEIDPLNRRF_					0	0	0		ENSG00000044446|ENST00000379942|PHKA2;nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1	ENSG00000044446|ENST00000379942|PHKA2;nc|ENSG00000067177|P46020-3|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	MULTI-SECPEP	A375_MHC_IP_R2	2	609.2251586914062	2	608.825286	1215.63602	-0.6934	-0.00042216	0.18907	0.00011511	-0.50433	-0.00030705	608.8254346098511	49.898	0.71317	50.652	50.344	51.057	0.75406					25	13	3	0	0	0	0.91909	1	18734	18734		9.3831	0	1	6114100			16662	1185;1429	12066	12158	16313	16313					0.036827201405458254
GEIDQQYSRF	10	Unmodified	_GEIDQQYSRF_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	A375_MHC_IP_R1	1	622.190673828125	2	621.791109	1241.56767	-0.10372	-6.449E-05	3.3316	0.0020716	3.2279	0.0020071	621.7932865696191	48.204	1.1639	48.204	47.92	49.084	0					55	22	3	0	0	0	3.2977E-05	2	16973	16973;17096		169.92	105.96	1	14671000			16663	7325	12067	12159	16314;16315	16314					-0.043455692299630755
GEIDTRFSF	9	Unmodified	_GEIDTRFSF_					0	0	0		ENSG00000137955|ENST00000319942|RABGGTB	ENSG00000137955|ENST00000319942|RABGGTB	ENSG00000137955|ENST00000319942|RABGGTB	MULTI-SECPEP	A375_MHC_IP_R1	1	536.6585693359375	2	536.258914	1070.50327	-0.75045	-0.00040243	0.04792	2.5698E-05	-0.70253	-0.00037674	536.2589382520006	77.204	1.2205	77.204	76.827	78.048	0					64	23	4	0	0	0	0.12938	1	28081	28081		78.06	78.06	1	52031000			16664	4938	12068	12160	16316	16316					-0.02915724316108026
GEIDTRFSF	9	Unmodified	_GEIDTRFSF_					0	0	0		ENSG00000137955|ENST00000319942|RABGGTB	ENSG00000137955|ENST00000319942|RABGGTB	ENSG00000137955|ENST00000319942|RABGGTB	MULTI-SECPEP	A375_MHC_IP_R2	2	536.6582641601562	2	536.258914	1070.50327	-0.85744	-0.00045981	0.041869	2.2453E-05	-0.81557	-0.00043736	536.2589241458775	76.438	1.4709	77.179	76.792	78.263	0.74052					70	28	5	0	0	0	0.12938	1	28960	28960		87.258	87.258	1	56660000			16665	4938	12068	12160	16317	16317					-0.02915724316108026
GEIEGLNDTF	10	Unmodified	_GEIEGLNDTF_					0	0	0		ENSG00000143401|ENST00000583931|ANP32E;nc|ENSG00000143401|Q9BTT0-2|ANP32E	ENSG00000143401|ENST00000583931|ANP32E	ENSG00000143401|ENST00000583931|ANP32E	MULTI-SECPEP	A375_MHC_IP_R1	1	548.1533203125	2	547.753661	1093.49277	-0.52529	-0.00028773	0.12245	6.7074E-05	-0.40284	-0.00022065	547.7536905625237	89.451	0.8105	89.451	89.12	89.931	0					35	15	3	0	0	0	0.014448	1	32822	32822		181.69	74.751	1	12757000			16666	5385	12069	12161	16318	16318					-0.05023751761200401
GEIEGLNDTF	10	Unmodified	_GEIEGLNDTF_					0	0	0		ENSG00000143401|ENST00000583931|ANP32E;nc|ENSG00000143401|Q9BTT0-2|ANP32E	ENSG00000143401|ENST00000583931|ANP32E	ENSG00000143401|ENST00000583931|ANP32E	MULTI-SECPEP	A375_MHC_IP_R2	2	548.1532592773438	2	547.753661	1093.49277	-0.71326	-0.00039069	-0.20902	-0.00011449	-0.92228	-0.00050518	547.7535768065424	88.834	0.80712	89.565	89.178	89.985	0.7318					46	15	4	0	0	0	0.033308	1	33750	33750		117.76	49.922	1	14061000			16667	5385	12069	12161	16319	16319					-0.05023751761200401
GEIETIARF	9	Unmodified	_GEIETIARF_					0	0	0		ENSG00000101474|ENST00000217456|APMAP;nc|ENSG00000101474|Q9HDC9-2|APMAP;APMAP|p.S137L|1|0.35|ENSG00000101474|chr20:24973656-24973656|G/A|missense_variant	ENSG00000101474|ENST00000217456|APMAP	ENSG00000101474|ENST00000217456|APMAP	MULTI-SECPEP	A375_MHC_IP_R1	1	518.677001953125	2	518.277106	1034.53966	-0.43475	-0.00022532	-0.28295	-0.00014665	-0.7177	-0.00037197	518.276947613276	70.52	0.87146	70.52	70.185	71.057	0					48	16	4	0	0	0	0.028087	1	25543	25543		106.94	54.672	1	29211000			16668	2304	12070	12162	16320	16320					0.023771525806068894
GEIETIARF	9	Unmodified	_GEIETIARF_					0	0	0		ENSG00000101474|ENST00000217456|APMAP;nc|ENSG00000101474|Q9HDC9-2|APMAP;APMAP|p.S137L|1|0.35|ENSG00000101474|chr20:24973656-24973656|G/A|missense_variant	ENSG00000101474|ENST00000217456|APMAP	ENSG00000101474|ENST00000217456|APMAP	MULTI-SECPEP	A375_MHC_IP_R2	2	518.6764526367188	2	518.277106	1034.53966	-0.63036	-0.0003267	0.040128	2.0797E-05	-0.59023	-0.0003059	518.2771059011822	69.707	0.96664	70.441	70.081	71.048	0.73421					52	18	4	0	0	0	0.05217	1	26353	26353		89.401	43.38	1	31906000			16669	2304	12070	12162	16321	16321					0.023771525806068894
GEIETLDDY	9	Unmodified	_GEIETLDDY_					0	0	0		nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	MULTI-MSMS	A375_MHC_IP_R1	1	528.1321411132812	2	527.732394	1053.45024	-0.29927	-0.00015793	0.27578	0.00014554	-0.023491	-1.2397E-05	527.7324324957016	72.043	0.5565	72.043	71.765	72.321	0					21	10	3	0	0	0	0.10411	1	26170	26170		49.933	15.831	1	6765800			16670	9407	12071	12163	16322	16322					-0.07435146889406496
GEIETLDDY	9	Unmodified	_GEIETLDDY_					0	0	0		nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	MULTI-MSMS	A375_MHC_IP_R2	2	528.132080078125	2	527.732394	1053.45024	-0.77416	-0.00040855	-0.039156	-2.0664E-05	-0.81331	-0.00042921	527.7323741170064	71.461	0.76116	72.195	71.857	72.618	0.73421					27	14	3	0	0	0	0.047602	1	27079	27079		65.235	32.93	1	4140700			16671	9407	12071	12163	16323	16323					-0.07435146889406496
GEIETVKQL	9	Unmodified	_GEIETVKQL_					0	0	0		ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	MULTI-SECPEP	A375_MHC_IP_R2	2	509.184326171875	2	508.784764	1015.55498	-0.82149	-0.00041796	-0.17283	-8.7932E-05	-0.99432	-0.00050589	508.78456386669507	41.617	0.76361	42.391	41.895	42.659	0.77451					18	14	2	0	0	0	0.11711	1	15447	15447		60.074	0.70553	1	9979900			16672	4957	12072	12164	16324	16324					0.04782019377819324
GEIIGVKVL	9	Unmodified	_GEIIGVKVL_					0	0	0		ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	MULTI-SECPEP	A375_MHC_IP_R1	1	464.69696044921875	2	464.29731	926.580068	-0.30653	-0.00014232	-0.080319	-3.7292E-05	-0.38685	-0.00017961	464.2971273604981	80.06	1.0167	80.06	79.676	80.693	0					28	19	3	0	0	0	0.31606	1	29219	29219		47.749	13.646	1	4578500			16673	8317	12073	12165	16325	16325					0.1138411897103424
GEIIGVKVL	9	Unmodified	_GEIIGVKVL_					0	0	0		ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	MULTI-SECPEP	A375_MHC_IP_R2	2	464.1422119140625	2	464.29731	926.580068	-0.50233	-0.00023323	0.0014263	6.6221E-07	-0.50091	-0.00023257	464.2972336207734	79.158	0.709	79.903	79.54	80.249	0.74474					29	13	4	0	0	0	0.13208	1	30062	30062		66.457	26.507	1	3407300			16674	8317	12073	12165	16326	16326					0.1138411897103424
GEIIMQNNW	9	Unmodified	_GEIIMQNNW_					0	0	0		ENSG00000082497|ENST00000367012|SERTAD4	ENSG00000082497|ENST00000367012|SERTAD4	ENSG00000082497|ENST00000367012|SERTAD4	MULTI-SECPEP	A375_MHC_IP_R1	1	552.632080078125	2	552.760766	1103.50698	-0.56614	-0.00031294	-0.71721	-0.00039644	-1.2833	-0.00070938	552.7604210721634	89.688	1.064	89.688	89.12	90.184	0					30	20	3	0	0	0	0.14422	1	32938	32938		43.858	35.948	1	2664200			16675	1760	12074	12166	16327	16327					-0.04063377813895386
GEIIMQNNW	9	Unmodified	_GEIIMQNNW_					0	0	0		ENSG00000082497|ENST00000367012|SERTAD4	ENSG00000082497|ENST00000367012|SERTAD4	ENSG00000082497|ENST00000367012|SERTAD4	MULTI-SECPEP	A375_MHC_IP_R2	2	553.16015625	2	552.760766	1103.50698	-0.70238	-0.00038825	-0.53781	-0.00029728	-1.2402	-0.00068553	552.7604556017436	88.876	0.65388	89.607	89.381	90.035	0.7318					25	12	3	0	0	0	0.20567	1	33868	33868		54.774	33.027	1	2162500			16676	1760	12074	12166	16328	16328					-0.04063377813895386
GEIKIAYTY	9	Unmodified	_GEIKIAYTY_					0	0	0		ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	MULTI-SECPEP	A375_MHC_IP_R2	2	529.6817626953125	2	529.281857	1056.54916	-0.86901	-0.00045995	0.14359	7.6E-05	-0.72541	-0.00038395	529.2818457000194	60.948	0.75826	61.693	61.414	62.172	0.74503					31	14	3	0	0	0	0.23313	1	23094	23094		57.249	24.463	1	8178800			16677	3948	12075	12167	16329	16329					0.023149208661379816
GEIKIAYTY	9	Unmodified	_GEIKIAYTY_					0	0	0		ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	MULTI-MATCH	A375_MHC_IP_R1	1		2	529.281857	1056.54916	-0.54473	-0.00028832	0.26862	0.00014218	-0.27611	-0.00014614	529.2820659505267	61.666	0.66366	61.666	61.331	61.994	0	-0.013576	9.0478E-05	NaN	80.676	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9148000			16678	3948	12075	12167							0.023149208661379816
GEIKVLQGF	9	Unmodified	_GEIKVLQGF_					0	0	0		ENSG00000047932|ENST00000368498|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC	ENSG00000047932|ENST00000368498|GOPC	ENSG00000047932|ENST00000368498|GOPC	MULTI-SECPEP	A375_MHC_IP_R1	1	496.1592102050781	2	495.784567	989.554582	-0.2041	-0.00010119	0.18411	9.1278E-05	-0.019994	-9.9125E-06	495.7844907013058	78.912	0.60734	78.912	78.606	79.214	0					15	11	2	0	0	0	0.010998	1	28783	28783		126.57	82.708	1	2538200			16679	1209	12076	12168	16330	16330					0.05938644448622199
GEIKVLQGF	9	Unmodified	_GEIKVLQGF_					0	0	0		ENSG00000047932|ENST00000368498|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC	ENSG00000047932|ENST00000368498|GOPC	ENSG00000047932|ENST00000368498|GOPC	MULTI-MSMS	A375_MHC_IP_R2	2	496.1841735839844	2	495.784567	989.554582	-0.4555	-0.00022583	0.29515	0.00014633	-0.16035	-7.9502E-05	495.7844002081075	77.999	0.51124	78.742	78.52	79.031	0.74293					18	9	3	0	0	0	0.02559	1	29648	29648		78.728	25.152	1	1810300			16680	1209	12076	12168	16331	16331					0.05938644448622199
GEILARQKLFL	11	Unmodified	_GEILARQKLFL_					0	0	0		CYP17A1|p.E451K|1|0.25|ENSG00000148795|chr10:102830878-102830878|C/T|missense_variant	CYP17A1|p.E451K|1|0.25|ENSG00000148795|chr10:102830878-102830878|C/T|missense_variant	CYP17A1|p.E451K|1|0.25|ENSG00000148795|chr10:102830878-102830878|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	430.3309326171875	3	429.930962	1286.77106	-0.23046	-9.9082E-05	0.18567	7.9824E-05	-0.044793	-1.9258E-05	429.93095063174235	31.801	0.40417	32.538	32.3	32.704	0.73692					21	7	4	0	0	0	0.73472	1	11269	11269		4.4062	0.28952	1	7548000			16681	694	12077	12169	16332	16332					0.1391420028230641
GEILLHISY	9	Unmodified	_GEILLHISY_					0	0	0		nc|ENSG00000147041|Q8TDW5-2|SYTL5;ENSG00000147041|ENST00000297875|SYTL5	nc|ENSG00000147041|Q8TDW5-2|SYTL5	nc|ENSG00000147041|Q8TDW5-2|SYTL5	MULTI-SECPEP	A375_MHC_IP_R1	1	523.326904296875	2	522.78985	1043.56515	-0.41523	-0.00021708	-0.2001	-0.00010461	-0.61533	-0.00032169	522.7897569054571	89.073	1.116	89.073	88.764	89.88	0					47	21	4	0	0	0	0.025235	1	32713	32713		107.19	51.01	1	9607100			16682	5650	12078	12170	16333	16333					0.04510627103036313
GEILLHISY	9	Unmodified	_GEILLHISY_					0	0	0		nc|ENSG00000147041|Q8TDW5-2|SYTL5;ENSG00000147041|ENST00000297875|SYTL5	nc|ENSG00000147041|Q8TDW5-2|SYTL5	nc|ENSG00000147041|Q8TDW5-2|SYTL5	MULTI-MSMS	A375_MHC_IP_R2	2	522.8058471679688	2	522.78985	1043.56515	-0.49816	-0.00026043	0.90997	0.00047572	0.4118	0.00021529	522.7896785946812	88.402	1.7179	89.134	88.621	90.339	0.7318					71	33	3	0	0	0	0.11629	1	33509	33509		47.749	30.636	1	8999400			16683	5650	12078	12170	16334	16334					0.04510627103036313
GEILRTEQW	9	Unmodified	_GEILRTEQW_					0	0	0		ENST00000596424.1_1_19:50360315-50362048:+|nuORF;nc|ENSG00000104960|Q86YD1-3|PTOV1;nc|ENSG00000104960|Q86YD1-2|PTOV1;ENSG00000104960|ENST00000391842|PTOV1	ENST00000596424.1_1_19:50360315-50362048:+|nuORF	ENST00000596424.1_1_19:50360315-50362048:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	566.6937255859375	2	566.293288	1130.57202	-0.81054	-0.000459	1.1118	0.00062959	0.30123	0.00017058	566.2936793893728	59.219	1.2656	59.966	59.185	60.45	0.74714					59	24	4	0	0	0	0.062502	1	22340	22340		83.429	43.19	1	28854000			16684	2558	12079	12171	16335	16335					0.011959399835859585
GEILTDMKY	9	Unmodified	_GEILTDMKY_					0	0	0		ENSG00000125863|ENST00000347364|MKKS	ENSG00000125863|ENST00000347364|MKKS	ENSG00000125863|ENST00000347364|MKKS	MULTI-SECPEP	A375_MHC_IP_R1	1	534.6167602539062	2	535.26535	1068.51615	-0.69029	-0.00036949	0.10019	5.3627E-05	-0.59011	-0.00031586	535.2655658409791	63.897	0.4058	63.897	63.735	64.141	0					10	7	2	0	0	0	0.54812	1	23124	23124		24.991	23.509	1	983800			16685	4000	12080	12172	16336	16336					-0.015370292482202785
GEILTDMKY	9	Unmodified	_GEILTDMKY_					0	0	0		ENSG00000125863|ENST00000347364|MKKS	ENSG00000125863|ENST00000347364|MKKS	ENSG00000125863|ENST00000347364|MKKS	MULTI-MATCH	A375_MHC_IP_R2	2		2	535.26535	1068.51615	-0.77004	-0.00041217	1.082	0.00057916	0.31196	0.00016698	535.2661044131191	63.236	0.5587	63.978	63.634	64.192	0.74195	0.040433	0.0004008	NaN	24.991	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1293700			16686	4000	12080	12172							-0.015370292482202785
GEINAQESTY	10	Unmodified	_GEINAQESTY_					0	0	0		nc|ENSG00000060749|Q2KHR3-2|QSER1;nc|ENSG00000060749|Q2KHR3|QSER1;ENSG00000060749|ENST00000650167|QSER1	nc|ENSG00000060749|Q2KHR3-2|QSER1	nc|ENSG00000060749|Q2KHR3-2|QSER1	MULTI-MSMS	A375_MHC_IP_R1	1	556.6609497070312	2	556.248743	1110.48293	-0.44731	-0.00024882	0.12239	6.8077E-05	-0.32492	-0.00018074	556.2489659710012	36.007	0.40595	36.007	35.727	36.133	0					13	7	2	0	0	0	0.59108	1	12033	12033		21.537	8.4945	1	1561000			16687	1315	12081	12173	16337	16337					-0.06788939766556723
GEIPDRLQF	9	Unmodified	_GEIPDRLQF_					0	0	0		ENST00000485835.1_1_17:38151035-38151804:+|nuORF;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENSG00000108344|ENST00000264639|PSMD3	ENST00000485835.1_1_17:38151035-38151804:+|nuORF	ENST00000485835.1_1_17:38151035-38151804:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	538.18212890625	2	537.782556	1073.55056	-0.69824	-0.0003755	0.15309	8.2329E-05	-0.54516	-0.00029318	537.7825231561787	75.706	0.40143	75.706	75.464	75.865	0					14	7	2	0	0	0	0.50484	1	27580	27580		34.932	5.8505	1	4669600			16688	2793	12082	12174	16338	16338					0.01672554954870975
GEIPDRLQF	9	Unmodified	_GEIPDRLQF_					0	0	0		ENST00000485835.1_1_17:38151035-38151804:+|nuORF;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENSG00000108344|ENST00000264639|PSMD3	ENST00000485835.1_1_17:38151035-38151804:+|nuORF	ENST00000485835.1_1_17:38151035-38151804:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	538.181884765625	2	537.782556	1073.55056	-0.93031	-0.0005003	0.55939	0.00030083	-0.37092	-0.00019948	537.7826635328423	74.959	0.50659	75.696	75.315	75.822	0.73752					16	9	2	0	0	0	0.27114	1	28435	28435		53.404	9.5457	1	3973700			16689	2793	12082	12174	16339	16339					0.01672554954870975
GEIPLPKLY	9	Unmodified	_GEIPLPKLY_					0	0	0		ENSG00000148358|ENST00000347136|GPR107;ENST00000493417.5_1_9:132839594-132891041:+|nuORF;nc|ENSG00000148358|Q5VW38|GPR107;nc|ENSG00000148358|Q5VW38-3|GPR107	ENSG00000148358|ENST00000347136|GPR107	ENSG00000148358|ENST00000347136|GPR107	MULTI-SECPEP	A375_MHC_IP_R1	1	515.7025756835938	2	515.302593	1028.59063	-0.61628	-0.00031757	0.089783	4.6265E-05	-0.5265	-0.00027131	515.3026373018192	94.243	1.2186	94.243	93.738	94.956	0					47	23	3	0	0	0	0.31606	1	34611	34611		39.95	5.8473	1	6629600			16690	5737	12083	12175	16340	16340					0.07748101625475101
GEIPLPKLY	9	Unmodified	_GEIPLPKLY_					0	0	0		ENSG00000148358|ENST00000347136|GPR107;ENST00000493417.5_1_9:132839594-132891041:+|nuORF;nc|ENSG00000148358|Q5VW38|GPR107;nc|ENSG00000148358|Q5VW38-3|GPR107	ENSG00000148358|ENST00000347136|GPR107	ENSG00000148358|ENST00000347136|GPR107	MULTI-MSMS	A375_MHC_IP_R2	2	515.3532104492188	2	515.302593	1028.59063	-0.63955	-0.00032956	0.61864	0.00031879	-0.020906	-1.0773E-05	515.3030933964409	93.451	1.2189	94.196	93.397	94.616	0.74474					46	23	3	0	0	0	0.12771	2	35511	35487;35511		45.7	11.597	1	8644500			16691	5737	12083	12175	16341;16342	16342					0.07748101625475101
GEIPWSQEL	9	Unmodified	_GEIPWSQEL_					0	0	0		nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	MULTI-SECPEP	A375_MHC_IP_R1	1	530.1607055664062	2	529.761289	1057.50803	-0.46942	-0.00024868	-1.0571	-0.00056	-1.5265	-0.00080868	529.7605931407408	105.29	0.60902	105.29	104.89	105.5	0					19	11	3	0	0	0	0.20451	1	38672	38672		41.956	15.687	1	2553600			16692	5204	12084	12176	16343	16343					-0.018428401733444844
GEIPWSQEL	9	Unmodified	_GEIPWSQEL_					0	0	0		nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	MULTI-SECPEP	A375_MHC_IP_R2	2	530.1610717773438	2	529.761289	1057.50803	-0.52461	-0.00027792	-0.6249	-0.00033105	-1.1495	-0.00060897	529.7608066756443	104.52	0.4586	105.29	105	105.46	0.76308					18	8	3	0	0	0	0.23313	1	39540	39540		57.249	30.365	1	2432900			16693	5204	12084	12176	16344	16344					-0.018428401733444844
GEIRLIKKL	9	Unmodified	_GEIRLIKKL_					0	0	0		ENSG00000113248|ENST00000231173|PCDHB15	ENSG00000113248|ENST00000231173|PCDHB15	ENSG00000113248|ENST00000231173|PCDHB15	MULTI-MSMS	A375_MHC_IP_R2	2	357.5975646972656	3	357.241248	1068.70191	-0.44955	-0.0001606	-0.012496	-4.464E-06	-0.46205	-0.00016506	357.24118836626764	35.395	0.40356	36.158	35.98	36.384	0.76338					17	7	3	0	0	0	0.62591	1	12807	12807		13.615	2.8154	1	3528600			16694	3133	12085	12177	16345	16345					0.1703116105340996
GEISGTIAI	9	Unmodified	_GEISGTIAI_					0	0	0		ENST00000514482.1_1_4:190862182-190882061:+|nuORF;ENSG00000109536|ENST00000226798|FRG1	ENST00000514482.1_1_4:190862182-190882061:+|nuORF	ENST00000514482.1_1_4:190862182-190882061:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	860.8727416992188	1	860.472374	859.465098	-0.69856	-0.00060109	-0.18708	-0.00016098	-0.88564	-0.00076207	860.4722116576428	80.754	1.5743	81.499	81.163	82.737	0.74473					68	30	4	0	0	0	0.01574	1	30877	30877		88.904	14.481	1	48265000			16695	2875	12086	12178	16346	16346					0.02974389769224217
GEISGTIAI	9	Unmodified	_GEISGTIAI_					0	0	0		ENST00000514482.1_1_4:190862182-190882061:+|nuORF;ENSG00000109536|ENST00000226798|FRG1	ENST00000514482.1_1_4:190862182-190882061:+|nuORF	ENST00000514482.1_1_4:190862182-190882061:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	860.472374	859.465098	-0.26304	-0.00022634	-0.11607	-9.9871E-05	-0.3791	-0.00032621	860.4722275831003	81.582	1.5702	81.582	81.202	82.772	0	0.041674	2.8407E-05	NaN	88.904	66	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53083000			16696	2875	12086	12178							0.02974389769224217
GEITGEGRRHW	11	Unmodified	_GEITGEGRRHW_					0	0	0		nc|ENSG00000116151|Q5T089-2|MORN1;ENSG00000116151|ENST00000378531|MORN1;ENST00000606372.5_1_1:2263981-2323005:-|nuORF;ENST00000607031.1_1_1:2319669-2319783:-|nuORF	nc|ENSG00000116151|Q5T089-2|MORN1	nc|ENSG00000116151|Q5T089-2|MORN1	MULTI-MSMS	A375_MHC_IP_R2	2	433.6182861328125	3	433.218054	1296.63233	-0.52962	-0.00022944	0.34379	0.00014894	-0.18582	-8.0502E-05	433.2177750118627	19.2	0.60556	19.803	19.533	20.139	0.60308					22	11	3	0	0	0	0.66366	1	5925	5925		11.065	0	1	2224600			16697	3377	12087	12179	16347	16347					-0.004119496333032657
GEKAVFVNVR	10	Unmodified	_GEKAVFVNVR_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R1	1	560.2183227539062	2	559.819473	1117.62439	-0.57502	-0.00032191	1.1843	0.00066302	0.60932	0.00034111	559.8194756587741	52.521	0.86187	52.521	52.287	53.148	0					44	16	5	0	0	0	0.37302	1	18667	18667		47.594	12.662	1	19094000			16698	6151;14694	12088	12180	16348	16348					0.07028523117219265
GEKCLIFGGF	10	Unmodified	_GEKCLIFGGF_					0	0	0			REV__nc|ENSG00000131042|Q8N423-4|LILRB2	REV__nc|ENSG00000131042|Q8N423-4|LILRB2	MULTI-MSMS	A375_MHC_IP_R1	1	535.6669921875	2	535.770603	1069.52665	-0.69438	-0.00037203	-2.1259	-0.001139	-2.8203	-0.001511	535.7682870578107	77.557	0.25443	77.557	77.436	77.69	0					8	4	3	0	0	0	0.6806	1	28305	28305		14.838	3.198	1	694660	+		16699	18583	12089	12181	16349	16349					-0.0053300180311453005
GEKEPDPKTW	10	Unmodified	_GEKEPDPKTW_					0	0	0		ENST00000472045.1_1_5:131822508-131823888:-|nuORF;ENSG00000125347|ENST00000245414|IRF1;ENST00000459982.5_1_5:131821868-131826375:-|nuORF	ENST00000472045.1_1_5:131822508-131823888:-|nuORF	ENST00000472045.1_1_5:131822508-131823888:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	396.647216796875	3	396.196144	1185.5666	-0.37506	-0.0001486	0.49947	0.00019789	0.12441	4.9291E-05	396.1963462361519	26.144	0.70913	26.144	25.714	26.423	0					17	13	2	0	0	0	0.61139	1	7756	7756		45.603	18.514	1	5072900			16700	3951	12090	12182	16350	16350					-0.018757835988708393
GEKEPDPKTW	10	Unmodified	_GEKEPDPKTW_					0	0	0		ENST00000472045.1_1_5:131822508-131823888:-|nuORF;ENSG00000125347|ENST00000245414|IRF1;ENST00000459982.5_1_5:131821868-131826375:-|nuORF	ENST00000472045.1_1_5:131822508-131823888:-|nuORF	ENST00000472045.1_1_5:131822508-131823888:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	396.5962219238281	3	396.196144	1185.5666	-0.57125	-0.00022633	0.82791	0.00032801	0.25666	0.00010169	396.1964409916442	25.521	0.50819	26.169	25.928	26.437	0.64772					20	9	3	0	0	0	0.7123	1	8548	8548		32.518	12.531	1	4808800			16701	3951	12090	12182	16351	16351					-0.018757835988708393
GEKGEDGFPGF	11	Unmodified	_GEKGEDGFPGF_					0	0	0		nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1;ENSG00000080573|ENST00000264828|COL5A3;nc|ENSG00000130635|P20908-2|COL5A1;ENSG00000130635|ENST00000371817|COL5A1;nc|ENSG00000204248|P13942-8|COL11A2;nc|ENSG00000204248|P13942-6|COL11A2;chr6:33185054-33186627|320|24.09|0.77|4.96|-|ENST00000374708|COL11A2,COL11A2;nc|ENSG00000204248|P13942-7|COL11A2;nc|ENSG00000204248|P13942-4|COL11A2;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2	nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000204248|P13942-8|COL11A2	nc|ENSG00000204248|P13942-8|COL11A2	MULTI-SECPEP	A375_MHC_IP_R2	2	570.9671020507812	2	570.253828	1138.4931	-0.62549	-0.00035669	-0.74116	-0.00042265	-1.3666	-0.00077933	570.2534793992105	57.601	0.9625	58.35	57.917	58.879	0.74895					27	18	3	0	0	0	0.86796	1	21810	21810		7.1017	0	1	2181700			16702	494;1314	12091	12183	16352	16352					-0.07060332041328365
GEKGYGLAPPI	11	Unmodified	_GEKGYGLAPPI_					0	0	0			REV__ENST00000479939.1_1_7:30062251-30066124:-|nuORF	REV__ENST00000479939.1_1_7:30062251-30066124:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	551.806640625	2	551.300581	1100.58661	-0.4648	-0.00025625	-0.095146	-5.2454E-05	-0.55995	-0.0003087	551.300467803108	72.87	0.76117	72.87	72.423	73.184	0					30	14	3	0	0	0	0.69231	1	26584	26584		16.149	3.6176	1	1859300	+		16703	17430	12092	12184	16353	16353					0.04034012131751297
GEKIERGNRYW	11	Unmodified	_GEKIERGNRYW_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R1	1	470.3088684082031	3	469.909109	1406.7055	-0.49277	-0.00023155	0.13956	6.5581E-05	-0.3532	-0.00016597	469.9091254456266	24.444	0.40171	24.444	24.296	24.698	0					13	7	2	0	0	0	0.71476	1	7002	7002		8.2864	2.4183	1	3911900	+		16704	19932	12093	12185	16354	16354					0.01841179089342404
GEKKPPEVKA	10	Unmodified	_GEKKPPEVKA_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MULTI-SECPEP	A375_MHC_IP_R1	1	542.1607666015625	2	541.813856	1081.61316	-0.58261	-0.00031567	-0.12728	-6.8964E-05	-0.70989	-0.00038463	541.8134798012568	100.63	0.45649	100.63	100.38	100.84	0					13	8	2	0	0	0	0.88918	1	36896	36896		8.7454	0	1	1642200	+		16705	17912	12094	12186	16355	16355					0.07561701023087153
GEKTLKNFL	9	Unmodified	_GEKTLKNFL_					0	0	0		tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	525.7022705078125	2	525.303124	1048.5917	-0.85501	-0.00044914	0.21431	0.00011258	-0.6407	-0.00033656	525.3031677135353	41.546	0.30603	41.546	41.368	41.674	0					10	5	2	0	0	0	0.71341	1	14389	14389		5.2969	0	1	2990300			16706	29983	12095	12187	16356	16356					0.06934315994362805
GELAFIKQL	9	Unmodified	_GELAFIKQL_					0	0	0		nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4	nc|ENSG00000069020|O15021-2|MAST4	nc|ENSG00000069020|O15021-2|MAST4	MULTI-MSMS	A375_MHC_IP_R1	1	510.20001220703125	2	509.800217	1017.58588	-0.68766	-0.00035057	-0.2719	-0.00013862	-0.95956	-0.00048919	509.8000991036102	90.82	0.76073	90.82	90.539	91.299	0					32	14	3	0	0	0	0.0098183	1	33362	33362		114.65	14.85	1	9226600			16707	1472	12096	12188	16357	16357					0.07779217482709555
GELAFIKQL	9	Unmodified	_GELAFIKQL_					0	0	0		nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4	nc|ENSG00000069020|O15021-2|MAST4	nc|ENSG00000069020|O15021-2|MAST4	MULTI-SECPEP	A375_MHC_IP_R2	2	510.2000427246094	2	509.800217	1017.58588	-0.65087	-0.00033182	-0.079154	-4.0353E-05	-0.73003	-0.00037217	509.8001755823756	89.993	0.81805	90.725	90.339	91.157	0.7318					36	15	3	0	0	0	0.03109	1	34208	34208		103.35	14.4	1	8493200			16708	1472	12096	12188	16358	16358					0.07779217482709555
GELALKKKI	9	Unmodified	_GELALKKKI_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	A375_MHC_IP_R1	1	500.0009460449219	2	500.331685	998.648816	-0.27771	-0.00013895	-0.11014	-5.5105E-05	-0.38784	-0.00019405	500.3316225966437	23.1	0.25126	23.1	22.873	23.125	0					6	4	2	0	0	0	0.79191	1	6285	6285		3.5965	0	1	936450			16709	9866	12097	12189	16359	16359					0.14943783270734912
GELDILKDW	9	Unmodified	_GELDILKDW_					0	0	0		ENST00000598481.1_1_19:7992859-7996070:-|nuORF;ENST00000598968.5_1_19:7992074-7996707:-|nuORF;ENSG00000104980|ENST00000270538|TIMM44	ENST00000598481.1_1_19:7992859-7996070:-|nuORF	ENST00000598481.1_1_19:7992859-7996070:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	544.745361328125	2	544.784764	1087.55498	-0.19057	-0.00010382	-0.23505	-0.00012805	-0.42562	-0.00023187	544.7845582407843	115.76	0.71201	115.76	115.43	116.14	0					31	13	3	0	0	0	0.0096822	1	42486	42486		110.55	21.152	1	6339400			16710	2562	12098	12190	16360	16360					0.014700193778253379
GELDILKDW	9	Unmodified	_GELDILKDW_					0	0	0		ENST00000598481.1_1_19:7992859-7996070:-|nuORF;ENST00000598968.5_1_19:7992074-7996707:-|nuORF;ENSG00000104980|ENST00000270538|TIMM44	ENST00000598481.1_1_19:7992859-7996070:-|nuORF	ENST00000598481.1_1_19:7992859-7996070:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	544.746826171875	2	544.784764	1087.55498	-0.61523	-0.00033517	0.30421	0.00016573	-0.31102	-0.00016944	544.7849518517039	114.96	0.562	115.65	115.32	115.88	0.68999					26	10	3	0	0	0	0.02331	1	43278	43278		80.676	19.074	1	7568500			16711	2562	12098	12190	16361	16361					0.014700193778253379
GELDTPINY	9	Unmodified	_GELDTPINY_					0	0	0		nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC;nc|ENSG00000134982|P25054-2|APC;APC|p.T1556Nfs*3|1|0.92|ENSG00000134982|chr5:112840254-112840255|-/A|frameshift_variant	nc|ENSG00000134982|P25054-3|APC	nc|ENSG00000134982|P25054-3|APC	MULTI-MSMS	A375_MHC_IP_R1	1	511.64495849609375	2	511.245472	1020.47639	-0.30049	-0.00015363	-0.62524	-0.00031965	-0.92573	-0.00047328	511.24519885779546	78.459	0.55483	78.459	78.201	78.756	0					18	10	2	0	0	0	0.033557	1	28646	28646		71.922	28.064	1	2392200			16712	4632	12099	12191	16362	16362					-0.03302832927295185
GELDTPINY	9	Unmodified	_GELDTPINY_					0	0	0		nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC;nc|ENSG00000134982|P25054-2|APC;APC|p.T1556Nfs*3|1|0.92|ENSG00000134982|chr5:112840254-112840255|-/A|frameshift_variant	nc|ENSG00000134982|P25054-3|APC	nc|ENSG00000134982|P25054-3|APC	MULTI-MSMS	A375_MHC_IP_R2	2	511.64569091796875	2	511.245472	1020.47639	-0.75286	-0.0003849	-0.58561	-0.00029939	-1.3385	-0.00068429	511.2453173255931	77.806	0.66457	78.549	78.315	78.98	0.74293					21	12	3	0	0	0	0.033557	1	29541	29541		71.922	31.965	1	2760300			16713	4632	12099	12191	16363	16363					-0.03302832927295185
GELEYATKI	9	Unmodified	_GELEYATKI_					0	0	0		nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	512.6039428710938	2	512.27149	1022.52843	-0.64579	-0.00033082	0.39279	0.00020122	-0.253	-0.00012961	512.2716634935434	53.095	0.35231	53.095	52.847	53.199	0					10	6	2	0	0	0	0.13244	1	18937	18937		51.415	20.147	1	1662700			16714	1288	12100	12192	16364	16364					0.01806330486465413
GELEYATKI	9	Unmodified	_GELEYATKI_					0	0	0		nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1029663085938	2	512.27149	1022.52843	-1.1565	-0.00059245	-0.33216	-0.00017016	-1.4887	-0.00076261	512.2714909492461	52.357	0.30185	53.109	52.932	53.234	0.75225					8	5	2	0	0	0	0.33896	1	19733	19733		47.594	19.966	1	2881400			16715	1288	12100	12192	16365	16365					0.01806330486465413
GELFLTKEF	9	Unmodified	_GELFLTKEF_					0	0	0		nc|ENSG00000203965|A8K855-2|EFCAB7;ENSG00000203965|ENST00000371088|EFCAB7;ENST00000461039.1_1_1:64021028-64034235:+|nuORF	nc|ENSG00000203965|A8K855-2|EFCAB7	nc|ENSG00000203965|A8K855-2|EFCAB7	MULTI-SECPEP	A375_MHC_IP_R2	2	542.3660888671875	2	542.289682	1082.56481	-0.73881	-0.00040065	-0.11706	-6.3479E-05	-0.85587	-0.00046413	542.2893632441129	89.665	0.46213	90.397	90.186	90.648	0.7318					15	8	2	0	0	0	0.16237	1	34093	34093		55.235	32.498	1	1721600			16716	9403	12101	12193	16366	16366					0.02683207383165609
GELHQRLD	8	Unmodified	_GELHQRLD_					0	0	0			REV__ENSG00000176531|ENST00000292140|PHLDB3	REV__ENSG00000176531|ENST00000292140|PHLDB3	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6499938964844	2	484.251423	966.488293	-0.92768	-0.00044923	0.27609	0.0001337	-0.65158	-0.00031553	484.25160388087636	56.479	0.51036	57.229	56.898	57.408	0.75015					12	9	2	0	0	0	0.90775	1	21281	21281		20.454	0.039092	1	2001200	+		16717	21409	12102	12194	16367	16367					0.003708286065602806
GELIERDGKKY	11	Unmodified	_GELIERDGKKY_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-MSMS	A375_MHC_IP_R1	1	436.9700927734375	3	436.569981	1306.68811	-0.15318	-6.6873E-05	0.53715	0.0002345	0.38397	0.00016763	436.5701000946788	20.029	0.50621	20.029	19.674	20.18	0					13	9	2	0	0	0	0.72829	1	5095	5095		10.527	0.51121	1	1426500			16718	2235	12103	12195	16368	16368					0.04703838763657586
GELKYVRI	8	Unmodified	_GELKYVRI_					0	0	0		ENSG00000106344|ENST00000223073|RBM28;nc|ENSG00000106344|Q9NW13-2|RBM28	ENSG00000106344|ENST00000223073|RBM28	ENSG00000106344|ENST00000223073|RBM28	MULTI-SECPEP	A375_MHC_IP_R1	1	488.6424255371094	2	489.292559	976.570566	-0.18741	-9.1699E-05	-0.66336	-0.00032458	-0.85077	-0.00041628	489.2921839630481	70.979	0.5629	70.979	70.648	71.211	0					18	10	2	0	0	0	0.91495	1	25857	25857		18.135	0	1	3758700			16719	2684	12104	12196	16369	16369					0.0813435068552053
GELLGEARY	9	Unmodified	_GELLGEARY_					0	0	0		ENST00000563264.1_1_16:29922856-29934675:-|nuORF;ENSG00000174943|ENST00000568000|KCTD13	ENST00000563264.1_1_16:29922856-29934675:-|nuORF	ENST00000563264.1_1_16:29922856-29934675:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	504.6612243652344	2	504.261456	1006.50836	-0.0013159	-6.6356E-07	0.33969	0.00017129	0.33838	0.00017063	504.26162619225533	49.514	0.91226	49.514	48.933	49.845	0					34	17	3	0	0	0	0.015356	1	17498	17498		89.401	31.929	1	14649000			16720	7916	12105	12197	16370	16370					0.005365795465081646
GELLGEARY	9	Unmodified	_GELLGEARY_					0	0	0		ENST00000563264.1_1_16:29922856-29934675:-|nuORF;ENSG00000174943|ENST00000568000|KCTD13	ENST00000563264.1_1_16:29922856-29934675:-|nuORF	ENST00000563264.1_1_16:29922856-29934675:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	504.6607971191406	2	504.261456	1006.50836	-0.74656	-0.00037646	0.1722	8.6835E-05	-0.57435	-0.00028962	504.26164107996493	48.746	0.96398	49.504	48.879	49.843	0.75736					37	18	3	0	0	0	0.015356	1	18271	18271		89.401	25.164	1	11839000			16721	7916	12105	12197	16371	16371					0.005365795465081646
GELQLLNVT	9	Unmodified	_GELQLLNVT_					0	0	0		ENST00000502555.5_1_17:48244836-48246708:+|nuORF;nc|ENSG00000108823|Q16586-2|SGCA;ENSG00000108823|ENST00000262018|SGCA	ENST00000502555.5_1_17:48244836-48246708:+|nuORF	ENST00000502555.5_1_17:48244836-48246708:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	494.1976318359375	2	493.779482	985.544411	-0.33211	-0.00016399	-0.023557	-1.1632E-05	-0.35567	-0.00017562	493.7794261567885	43.732	0.35682	43.732	43.502	43.859	0					12	6	2	0	0	0	0.4867	1	15151	15151		20.454	1.1966	1	3864600			16722	2841	12106	12198	16372	16372					0.05106036723384477
GELQQSSAY	9	Unmodified	_GELQQSSAY_					0	0	0			REV__ENST00000481134.1_1_3:142170107-142170575:+|nuORF	REV__ENST00000481134.1_1_3:142170107-142170575:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	492.1272888183594	2	491.727446	981.44034	-0.32607	-0.00016034	-0.32872	-0.00016164	-0.65478	-0.00032197	491.72728718359514	34.103	0.45535	34.103	33.798	34.253	0					12	8	2	0	0	0	0.53748	1	11214	11214		18.146	0	1	1784100	+		16723	25255	12107	12199	16373	16373					-0.051122901041367186
GELRLPDSNY	10	Unmodified	_GELRLPDSNY_					0	0	0			REV__ENST00000233813.4_1_2:217559507-217559828:-|nuORF	REV__ENST00000233813.4_1_2:217559507-217559828:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	582.6883544921875	2	582.288202	1162.56185	-0.20794	-0.00012108	0.73389	0.00042734	0.52595	0.00030625	582.2885770589501	59.998	0.30554	59.998	59.854	60.159	0					10	5	2	0	0	0	0.36067	1	21604	21604		36.506	1.5741	1	1950600	+		16724	23080	12108	12200	16374	16374					-0.012926677416317034
GELRLPDSNY	10	Unmodified	_GELRLPDSNY_					0	0	0			REV__ENST00000233813.4_1_2:217559507-217559828:-|nuORF	REV__ENST00000233813.4_1_2:217559507-217559828:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	582.6878051757812	2	582.288202	1162.56185	-0.78068	-0.00045458	0.1363	7.9366E-05	-0.64438	-0.00037521	582.2881541878554	59.174	0.45622	59.921	59.691	60.148	0.74714					12	8	2	0	0	0	0.81532	1	22421	22421		24.991	24.991	1	2125500	+		16725	23080	12108	12200	16375	16375					-0.012926677416317034
GELSLPVHL	9	Unmodified	_GELSLPVHL_					0	0	0		nc|ENSG00000000460|Q9NSG2-3|FIRRM;ENST00000498289.5_1_1:169773308-169819597:+|nuORF;nc|ENSG00000000460|Q9NSG2-2|FIRRM;ENSG00000000460|ENST00000359326|C1orf112	nc|ENSG00000000460|Q9NSG2-3|FIRRM	nc|ENSG00000000460|Q9NSG2-3|FIRRM	MULTI-SECPEP	A375_MHC_IP_R1	1	483.1768493652344	2	482.776742	963.538931	-0.33093	-0.00015977	0.19177	9.2584E-05	-0.13916	-6.7182E-05	482.7768480832	96.226	0.30605	96.226	95.968	96.274	0					10	5	2	0	0	0	0.43707	1	35379	35379		36.044	7.5574	1	1690400			16726	840	12109	12201	16376	16376					0.05570357931560466
GELSLPVHL	9	Unmodified	_GELSLPVHL_					0	0	0		nc|ENSG00000000460|Q9NSG2-3|FIRRM;ENST00000498289.5_1_1:169773308-169819597:+|nuORF;nc|ENSG00000000460|Q9NSG2-2|FIRRM;ENSG00000000460|ENST00000359326|C1orf112	nc|ENSG00000000460|Q9NSG2-3|FIRRM	nc|ENSG00000000460|Q9NSG2-3|FIRRM	MULTI-MATCH	A375_MHC_IP_R2	2		2	482.776742	963.538931	-0.34728	-0.00016766	-1.1022	-0.00053211	-1.4495	-0.00069977	482.776271043588	95.214	0.2558	95.964	95.785	96.041	0.75045	-0.13077	-0.000531	NaN	60.39	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	977210			16727	840	12109	12201							0.05570357931560466
GELSSADEKRY	11	Unmodified	_GELSSADEKRY_					0	0	0		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MULTI-MSMS	A375_MHC_IP_R1	1	628.2012939453125	2	627.801674	1253.58879	-0.62971	-0.00039533	0.2956	0.00018558	-0.33411	-0.00020975	627.8017990589509	19.885	0.30482	19.885	19.725	20.03	0					13	5	3	0	0	0	0.001348	1	5043	5043		99.864	70.024	1	2264300			16728	878	12110	12202	16377	16377					-0.02785603921074653
GELSSADEKRY	11	Unmodified	_GELSSADEKRY_					0	0	0		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MULTI-SECPEP	A375_MHC_IP_R1	1	419.2701721191406	3	418.870208	1253.58879	0.11178	4.6823E-05	0.08464	3.5453E-05	0.19642	8.2276E-05	418.8701103039149	19.905	0.60898	19.905	19.571	20.18	0					28	11	4	0	0	0	0.13718	1	5016	5016		76.068	49.948	1	8062400			16729	878	12110	12202	16378	16378					-0.02785603921074653
GELSSADEKRY	11	Unmodified	_GELSSADEKRY_					0	0	0		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MULTI-MATCH	A375_MHC_IP_R2	2		2	627.801674	1253.58879	-1.0952	-0.00068755	0.98175	0.00061634	-0.11342	-7.1207E-05	627.8020218892632	19.054	0.29996	19.658	19.533	19.833	0.60308	-0.11351	0.0008375	NaN	99.864	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1982900			16730	878	12110	12202							-0.02785603921074653
GELSVPEKY	9	Unmodified	_GELSVPEKY_					0	0	0		ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1;nc|ENSG00000107938|Q3B7T1-3|EDRF1;nc|ENSG00000107938|Q3B7T1-4|EDRF1;ENST00000481600.5_1_10:127417653-127452038:+|nuORF	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	511.9884338378906	2	511.263665	1020.51278	-0.2458	-0.00012567	-0.472	-0.00024131	-0.71779	-0.00036698	511.2637155856792	44.292	0.35896	44.292	44.061	44.42	0					10	6	2	0	0	0	0.69381	1	15402	15402		15.248	1.3424	1	895840			16731	2771	12111	12203	16379	16379					0.003340439694284214
GELSVPEKY	9	Unmodified	_GELSVPEKY_					0	0	0		ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1;nc|ENSG00000107938|Q3B7T1-3|EDRF1;nc|ENSG00000107938|Q3B7T1-4|EDRF1;ENST00000481600.5_1_10:127417653-127452038:+|nuORF	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	511.263665	1020.51278	-0.57696	-0.00029498	-0.38167	-0.00019513	-0.95862	-0.00049011	511.2634796035089	43.635	0.35335	44.404	44.126	44.48	0.7691	0.056226	4.803E-05	NaN	15.248	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1316800			16732	2771	12111	12203							0.003340439694284214
GELTGKSW	8	Unmodified	_GELTGKSW_					0	0	0		ENST00000220592.9_2_8:141572654-141595341:-|nuORF	ENST00000220592.9_2_8:141572654-141595341:-|nuORF	ENST00000220592.9_2_8:141572654-141595341:-|nuORF	MSMS	A375_MHC_IP_R2	2	439.1288146972656	2	439.224342	876.434132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.221	1	35.985	35.485	36.485	0.76338								0	0	0	0.16876	1	12761	12761		13.042	1.928	1				16733	10106	12112	12204	16380	16380					-0.009027635450024718
GELTNFVRDP	10	Unmodified	_GELTNFVRDP_					0	0	0			REV__NRCAM|p.P948L|1|0.19|ENSG00000091129|chr7:108180231-108180231|G/A|missense_variant	REV__NRCAM|p.P948L|1|0.19|ENSG00000091129|chr7:108180231-108180231|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	574.6904907226562	2	574.290745	1146.56694	-0.19115	-0.00010978	-0.94025	-0.00053997	-1.1314	-0.00064975	574.290739528219	59.978	0.661	59.978	59.498	60.159	0					31	12	4	0	0	0	0.77698	1	21551	21551		17.443	17.443	1	4784900	+		16734	27628	12113	12205	16381	16381					-0.0004836387897739769
GELVIDDSY	9	Unmodified	_GELVIDDSY_					0	0	0		ENST00000418170.5_1_22:35660034-35689641:+|nuORF;ENSG00000100281|ENST00000216106|HMGXB4	ENST00000418170.5_1_22:35660034-35689641:+|nuORF	ENST00000418170.5_1_22:35660034-35689641:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	505.6689758300781	2	505.73748	1009.46041	-0.8386	-0.00042411	-0.98424	-0.00049776	-1.8228	-0.00092188	505.73723087579236	55.866	0.45799	56.616	56.287	56.745	0.75015					14	8	2	0	0	0	0.6898	1	20995	20995		7.9102	0	1	1699000			16735	2150	12114	12206	16382	16382					-0.04394539164195521
GELVTVIGAI	10	Unmodified	_GELVTVIGAI_					0	0	0		nc|ENSG00000165125|Q9H1D0-2|TRPV6;ENSG00000165125|ENST00000359396|TRPV6	nc|ENSG00000165125|Q9H1D0-2|TRPV6	nc|ENSG00000165125|Q9H1D0-2|TRPV6	MULTI-SECPEP	A375_MHC_IP_R2	2	486.692138671875	2	486.292225	970.569897	-0.53236	-0.00025888	0.19393	9.4308E-05	-0.33842	-0.00016457	486.29220349528225	70.049	0.50906	70.783	70.335	70.844	0.73421					16	9	2	0	0	0	0.27864	1	26542	26542		34.402	9.4108	1	1545500			16736	6919	12115	12207	16383	16383					0.08343511245811897
GEMDDEDP	8	Unmodified	_GEMDDEDP_					0	0	0			REV__ENST00000496181.1_1_6:167435938-167438429:+|nuORF	REV__ENST00000496181.1_1_6:167435938-167438429:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	906.856201171875	1	907.298569	906.291292	0.16462	0.00014936	-1.2826	-0.0011637	-1.118	-0.0010143	907.2979766057548	116.57	1.5249	116.57	115.38	116.9	0					44	29	2	0	0	0	0.972	1	42383	42383		0.69038	0	1	25150000	+		16737	22611	12116	12208	16384	16384					-0.16560183789204075
GEMPPGLNF	9	Oxidation (M)	_GEM(Oxidation (M))PPGLNF_		GEM(1)PPGLNF		GEM(59)PPGLNF	0	0	1		ENSG00000162735|ENST00000368072|PEX19	ENSG00000162735|ENST00000368072|PEX19	ENSG00000162735|ENST00000368072|PEX19	MULTI-MSMS	A375_MHC_IP_R1	1	489.6736755371094	2	489.223485	976.432418	-0.12963	-6.3418E-05	0.21741	0.00010636	0.087775	4.2941E-05	489.2234003711952	82.342	1.0128	82.342	81.961	82.974	0					27	19	2	0	0	0	0.064406	2	30251	30102;30251		58.679	36.932	1	2622600			16738	6584	12117	12209	16385;16386	16386		351			-0.056741406252513116
GEMPPGLNF	9	Unmodified	_GEMPPGLNF_					0	0	0		ENSG00000162735|ENST00000368072|PEX19	ENSG00000162735|ENST00000368072|PEX19	ENSG00000162735|ENST00000368072|PEX19	MULTI-MSMS	A375_MHC_IP_R1	1	481.18450927734375	2	481.226028	960.437503	-0.3481	-0.00016752	0.51762	0.00024909	0.16951	8.1574E-05	481.2263175005569	103.39	1.4739	103.39	102.56	104.03	0					44	28	2	0	0	0	0.11629	1	37968	37968		47.749	31.902	1	743300			16739	6584	12117	12210	16387	16387					-0.044298367626424806
GEMPPGLNF	9	Unmodified	_GEMPPGLNF_					0	0	0		ENSG00000162735|ENST00000368072|PEX19	ENSG00000162735|ENST00000368072|PEX19	ENSG00000162735|ENST00000368072|PEX19	MULTI-MSMS	A375_MHC_IP_R2	2	481.184326171875	2	481.226028	960.437503	-0.55971	-0.00026935	0.50402	0.00024255	-0.05569	-2.6799E-05	481.2262881956697	102.94	1.27	103.7	102.72	103.99	0.76428					40	24	2	0	0	0	0.070818	1	38843	38843		56.177	39.235	1	1435900			16740	6584	12117	12210	16388	16388					-0.044298367626424806
GEMPRNLREY	10	Unmodified	_GEMPRNLREY_					0	0	0		ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	MULTI-MSMS	A375_MHC_IP_R1	1	422.6082763671875	3	422.208278	1263.60301	-0.34402	-0.00014525	0.67406	0.0002846	0.33004	0.00013935	422.54289807008496	30.221	0.50335	30.221	30.049	30.553	0					13	9	2	0	0	0	0.71047	1	9644	9644		4.4062	0.21665	1	3468400			16741	2520	12118	12211	16389	16389					-0.01825229973792375
GEMPRNLREY	10	Unmodified	_GEMPRNLREY_					0	0	0		ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	MULTI-MSMS	A375_MHC_IP_R2	2	422.60809326171875	3	422.208278	1263.60301	-0.80196	-0.00033859	0.35317	0.00014911	-0.44879	-0.00018948	422.2083466419874	29.512	0.40271	30.21	30.032	30.434	0.69872					13	7	2	0	0	0	0.49514	1	10340	10340		19.987	11.7	1	3475200			16742	2520	12118	12211	16390	16390					-0.01825229973792375
GEMQCHTV	8	Unmodified	_GEMQCHTV_					0	0	0		ENST00000332290.3_1_6:170104364-170104589:+|nuORF	ENST00000332290.3_1_6:170104364-170104589:+|nuORF	ENST00000332290.3_1_6:170104364-170104589:+|nuORF	MSMS	A375_MHC_IP_R1	1	452.642822265625	2	452.686213	903.357872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.973	1	43.973	43.473	44.473	0								0	0	0	0.16876	1	15319	15319		10.183	3.8293	1				16743	10776	12119	12212	16391	16391					-0.09767226708299859
GENDFSVMY	9	Oxidation (M)	_GENDFSVM(Oxidation (M))Y_		GENDFSVM(1)Y		GENDFSVM(52)Y	0	0	1		ENSG00000110066|ENST00000304363|KMT5B;nc|ENSG00000110066|Q4FZB7-4|KMT5B;nc|ENSG00000110066|Q4FZB7-2|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	MULTI-MSMS	A375_MHC_IP_R1	1	539.6133422851562	2	539.213314	1076.41208	-0.1323	-7.1337E-05	-0.19213	-0.0001036	-0.32443	-0.00017494	539.2132359052483	69.472	0.70946	69.472	69.173	69.882	0					19	13	2	0	0	0	0.091096	2	25243	25212;25243		52.268	37.43	1	3656300			16744	2916	12120	12213	16392;16393	16393		137			-0.12307356075734788
GENDFSVMY	9	Oxidation (M)	_GENDFSVM(Oxidation (M))Y_		GENDFSVM(1)Y		GENDFSVM(48)Y	0	0	1		ENSG00000110066|ENST00000304363|KMT5B;nc|ENSG00000110066|Q4FZB7-4|KMT5B;nc|ENSG00000110066|Q4FZB7-2|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	MULTI-MSMS	A375_MHC_IP_R2	2	539.61279296875	2	539.213314	1076.41208	-0.75257	-0.00040579	-0.23921	-0.00012899	-0.99178	-0.00053478	539.213168701409	68.916	0.70974	69.651	69.373	70.082	0.73511					21	13	2	0	0	0	0.11629	1	26116	26116		47.749	33.843	1	3209800			16745	2916	12120	12213	16394	16394		137			-0.12307356075734788
GENDRGVSF	9	Unmodified	_GENDRGVSF_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENST00000532279.1_1_11:67166350-67167062:-|nuORF;ENST00000462832.5_1_2:29006774-29038903:+|nuORF;ENSG00000213639|ENST00000395366|PPP1CB;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	A375_MHC_IP_R1	1	492.1929931640625	2	490.725238	979.435923	-0.51825	-0.00025432	-0.05316	-2.6087E-05	-0.57141	-0.00028041	490.725202994452	32.455	0.96017	32.455	32.179	33.14	0					58	18	4	0	0	0	0.44024	1	10459	10459		22.736	6.8891	1	57534000			16746	7718;9575;14768	12121	12214	16395	16395					-0.054617545270275514
GENEDLLKL	9	Unmodified	_GENEDLLKL_					0	0	0		ENSG00000119953|ENST00000369603|SMNDC1;ENST00000460483.5_1_10:112057460-112064550:-|nuORF;ENST00000471297.1_1_10:112058551-112064550:-|nuORF	ENSG00000119953|ENST00000369603|SMNDC1	ENSG00000119953|ENST00000369603|SMNDC1	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1736450195312	2	515.774396	1029.53424	-0.47578	-0.0002454	0.24939	0.00012863	-0.22639	-0.00011677	515.7742792067178	70.571	0.61287	70.571	70.289	70.902	0					18	11	2	0	0	0	0.11887	1	25638	25638		63.227	29.783	1	2768100			16747	3640	12122	12215	16396	16396					0.02065428998139396
GENEDLLKL	9	Unmodified	_GENEDLLKL_					0	0	0		ENSG00000119953|ENST00000369603|SMNDC1;ENST00000460483.5_1_10:112057460-112064550:-|nuORF;ENST00000471297.1_1_10:112058551-112064550:-|nuORF	ENSG00000119953|ENST00000369603|SMNDC1	ENSG00000119953|ENST00000369603|SMNDC1	MULTI-SECPEP	A375_MHC_IP_R2	2	516.1741943359375	2	515.774396	1029.53424	-0.68502	-0.00035332	0.81824	0.00042203	0.13322	6.8712E-05	515.7744547796816	69.726	0.55991	70.46	70.183	70.743	0.73421					14	10	2	0	0	0	0.20451	1	26431	26431		49.554	25.765	1	3608700			16748	3640	12122	12215	16397	16397					0.02065428998139396
GENELPSQW	9	Unmodified	_GENELPSQW_					0	0	0		ENSG00000110427|ENST00000658780|KIAA1549L;nc|ENSG00000110427|Q6ZVL6|KIAA1549L	ENSG00000110427|ENST00000658780|KIAA1549L	ENSG00000110427|ENST00000658780|KIAA1549L	MULTI-MSMS	A375_MHC_IP_R1	1	530.6403198242188	2	530.240721	1058.46689	-0.57395	-0.00030433	-0.44873	-0.00023793	-1.0227	-0.00054226	530.2404134394661	74.453	0.60828	74.453	74.045	74.653	0					17	11	2	0	0	0	0.095851	1	27171	27171		51.415	31.001	1	2213500			16749	2934	12123	12216	16398	16398					-0.06000601212804213
GENELPSQW	9	Unmodified	_GENELPSQW_					0	0	0		ENSG00000110427|ENST00000658780|KIAA1549L;nc|ENSG00000110427|Q6ZVL6|KIAA1549L	ENSG00000110427|ENST00000658780|KIAA1549L	ENSG00000110427|ENST00000658780|KIAA1549L	MULTI-SECPEP	A375_MHC_IP_R2	2	530.640380859375	2	530.240721	1058.46689	-0.58124	-0.0003082	-0.46001	-0.00024391	-1.0413	-0.00055211	530.2407458436409	73.871	0.56147	74.608	74.245	74.807	0.73752					16	10	2	0	0	0	0.20645	1	28040	28040		56.177	21.775	1	1338600			16750	2934	12123	12216	16399	16399					-0.06000601212804213
GENEYYNQT	9	Unmodified	_GENEYYNQT_					0	0	0		EDAR|p.S313Lfs*59|1|0.3|ENSG00000135960|chr2:108907886-108907886|A/-|frameshift_variant;ENSG00000135960|ENST00000258443|EDAR;nc|ENSG00000135960|Q9UNE0-2|EDAR	EDAR|p.S313Lfs*59|1|0.3|ENSG00000135960|chr2:108907886-108907886|A/-|frameshift_variant	EDAR|p.S313Lfs*59|1|0.3|ENSG00000135960|chr2:108907886-108907886|A/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	559.1439208984375	2	559.225268	1116.43598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.79	1	89.521	89.021	90.021	0.7318								0	0	0	0.15411	1	33791	33791		14.838	2.5976	1				16751	819	12124	12217	16400	16400					-0.11757799317706485
GENGAILRY	9	Unmodified	_GENGAILRY_					0	0	0		ENST00000375895.6_1_6:31632636-31633491:-|nuORF	ENST00000375895.6_1_6:31632636-31633491:-|nuORF	ENST00000375895.6_1_6:31632636-31633491:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	497.1611328125	2	496.761623	991.508694	-0.32984	-0.00016385	-0.66504	-0.00033037	-0.99488	-0.00049422	496.761274673478	43.343	0.70808	44.115	43.775	44.483	0.7724					15	13	2	0	0	0	0.2002	1	16192	16192		37.974	11.633	1	1908800			16752	11278	12125	12218	16401	16401					0.012599992663922421
GENGFNQAI	9	Unmodified	_GENGFNQAI_					0	0	0		ENSG00000120705|ENST00000360541|ETF1;nc|ENSG00000120705|P62495-2|ETF1;ENST00000506345.5_1_5:137847134-137853282:-|nuORF	ENSG00000120705|ENST00000360541|ETF1	ENSG00000120705|ENST00000360541|ETF1	MULTI-SECPEP	A375_MHC_IP_R1	1	475.6452331542969	2	475.222331	948.430109	-0.69986	-0.00033259	0.43955	0.00020888	-0.26031	-0.00012371	475.22253630056446	52.978	0.50534	52.978	52.694	53.199	0					20	9	3	0	0	0	0.49205	1	18843	18843		27.629	27.629	1	2729900			16753	3680	12126	12219	16402	16402					-0.04616853038726276
GENGIHFLL	9	Unmodified	_GENGIHFLL_					0	0	0		ENSG00000132463|ENST00000254799|GRSF1;ENST00000505068.5_1_4:71691792-71705589:-|nuORF;nc|ENSG00000132463|Q12849-5|GRSF1	ENSG00000132463|ENST00000254799|GRSF1	ENSG00000132463|ENST00000254799|GRSF1	MULTI-SECPEP	A375_MHC_IP_R2	2	500.4749755859375	2	500.266542	998.51853	-0.49573	-0.000248	0.40444	0.00020233	-0.091286	-4.5667E-05	500.2667151949947	92.6	0.6072	93.339	93.089	93.696	0.73902					15	11	2	0	0	0	0.35487	1	35244	35244		36.127	7.0454	1	952270			16754	4409	12127	12220	16403	16403					0.01921187271761937
GENGIHFLL	9	Unmodified	_GENGIHFLL_					0	0	0		ENSG00000132463|ENST00000254799|GRSF1;ENST00000505068.5_1_4:71691792-71705589:-|nuORF;nc|ENSG00000132463|Q12849-5|GRSF1	ENSG00000132463|ENST00000254799|GRSF1	ENSG00000132463|ENST00000254799|GRSF1	MULTI-MATCH	A375_MHC_IP_R1	1		2	500.266542	998.51853	-0.30091	-0.00015053	0.24345	0.00012179	-0.05746	-2.8745E-05	500.26649639982855	93.526	0.45912	93.526	93.329	93.789	0	0.093731	-9.7467E-05	NaN	36.127	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	904670			16755	4409	12127	12220							0.01921187271761937
GENGNIILY	9	Unmodified	_GENGNIILY_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;ENST00000506497.5_1_4:83799153-83812260:-|nuORF	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	A375_MHC_IP_R1	1	497.15557861328125	2	496.756007	991.497461	-0.31675	-0.00015735	-0.69923	-0.00034735	-1.016	-0.00050469	496.75548823662405	82.996	0.91163	82.996	82.52	83.432	0					36	17	3	0	0	0	0.018261	1	30347	30347		85.642	21.405	1	3240400			16756	5020	12128	12221	16404	16404					0.0013717717223471482
GENGNIILY	9	Unmodified	_GENGNIILY_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;ENST00000506497.5_1_4:83799153-83812260:-|nuORF	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	A375_MHC_IP_R1	1	992.9547729492188	1	992.504737	991.497461	0.27541	0.00027335	-0.59478	-0.00059032	-0.31937	-0.00031698	992.5040802998432	82.99	0.70742	82.99	82.622	83.329	0					30	13	3	0	0	0	0.032333	1	30358	30358		72.968	11.61	1	12699000			16757	5020	12128	12221	16405	16405					0.0013717717223471482
GENGNIILY	9	Unmodified	_GENGNIILY_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;ENST00000506497.5_1_4:83799153-83812260:-|nuORF	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	A375_MHC_IP_R2	2	496.4933166503906	2	496.756007	991.497461	-0.52291	-0.00025976	-0.46494	-0.00023096	-0.98785	-0.00049072	496.75599333241297	82.214	0.96398	82.957	82.533	83.497	0.74293					39	18	4	0	0	0	0.064406	1	31207	31207		58.679	6.4105	1	4132400			16758	5020	12128	12221	16406	16406					0.0013717717223471482
GENGNIILY	9	Unmodified	_GENGNIILY_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;ENST00000506497.5_1_4:83799153-83812260:-|nuORF	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MATCH	A375_MHC_IP_R2	2		1	992.504737	991.497461	-0.035775	-3.5507E-05	-0.016997	-1.687E-05	-0.052772	-5.2377E-05	992.5046327538939	82.154	0.66174	82.897	82.584	83.246	0.74293	-0.046542	0.00027978	NaN	72.968	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10532000			16759	5020	12128	12221							0.0013717717223471482
GENHLTVTW	9	Unmodified	_GENHLTVTW_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-2|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	A375_MHC_IP_R1	1	529.6817626953125	2	528.759081	1055.50361	-0.52999	-0.00028024	1.1255	0.00059513	0.59554	0.0003149	528.759645843862	61.665	0.51088	61.665	61.432	61.943	0					19	9	3	0	0	0	0.61998	1	22231	22231		13.906	0.39817	1	6772500			16760	2857	12129	12222	16407	16407					-0.021923045962239485
GENHLTVTW	9	Unmodified	_GENHLTVTW_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-2|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	A375_MHC_IP_R2	2	529.1592407226562	2	528.759081	1055.50361	-0.84292	-0.0004457	0.78623	0.00041572	-0.056692	-2.9977E-05	528.7593852889491	60.891	0.40457	61.636	61.464	61.869	0.74503					18	7	3	0	0	0	0.094655	1	23092	23092		51.63	15.503	1	7886300			16761	2857	12129	12222	16408	16408					-0.021923045962239485
GENLFQGEL	9	Unmodified	_GENLFQGEL_					0	0	0			REV__ASXL3|p.P584L|1|0.24|ENSG00000141431|chr18:33739155-33739155|C/T|missense_variant	REV__ASXL3|p.P584L|1|0.24|ENSG00000141431|chr18:33739155-33739155|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	503.6837158203125	2	503.745639	1005.47673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.419	1	91.154	90.654	91.654	0.7345								0	0	0	0.14905	1	34404	34404		23.148	0	1		+		16762	15470	12130	12223	16409	16409					-0.025794132074224763
GENLKTEQW	9	Unmodified	_GENLKTEQW_					0	0	0		nc|ENSG00000104973|Q71SY5-4|MED25;nc|ENSG00000104973|Q71SY5-6|MED25;nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25	nc|ENSG00000104973|Q71SY5-4|MED25	nc|ENSG00000104973|Q71SY5-4|MED25	MULTI-MSMS	A375_MHC_IP_R1	1	553.1694946289062	2	552.769645	1103.52474	-0.51733	-0.00028597	0.034237	1.8925E-05	-0.4831	-0.00026704	552.7697343249953	37.152	0.50671	37.152	36.895	37.402	0					15	9	2	0	0	0	0.0099737	1	12504	12504		96.367	36.293	1	4961500			16763	14522	12131	12224	16410	16410					-0.022883392873836783
GENLKTEQW	9	Unmodified	_GENLKTEQW_					0	0	0		nc|ENSG00000104973|Q71SY5-4|MED25;nc|ENSG00000104973|Q71SY5-6|MED25;nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25	nc|ENSG00000104973|Q71SY5-4|MED25	nc|ENSG00000104973|Q71SY5-4|MED25	MULTI-MSMS	A375_MHC_IP_R2	2	553.1690063476562	2	552.769645	1103.52474	-0.99342	-0.00054913	0.15757	8.7098E-05	-0.83585	-0.00046203	552.7697558084346	36.346	0.50853	37.117	36.901	37.41	0.7709					16	9	2	0	0	0	0.02331	1	13256	13256		80.676	29.046	1	5605900			16764	14522	12131	12224	16411	16411					-0.022883392873836783
GENLPPLTY	9	Unmodified	_GENLPPLTY_					0	0	0		ENST00000419457.1_1_13:29296686-29297403:-|nuORF;nc|ENSG00000001630|Q16850-2|CYP51A1;ENSG00000001630|ENST00000003100|CYP51A1	ENST00000419457.1_1_13:29296686-29297403:-|nuORF	ENST00000419457.1_1_13:29296686-29297403:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.6945495605469	2	502.258382	1002.50221	-0.46215	-0.00023212	-0.17474	-8.7766E-05	-0.6369	-0.00031989	502.25822170372703	87.174	1.4227	87.174	86.629	88.052	0					80	27	4	0	0	0	0.048303	1	32163	32163		83.429	25.707	1	19273000			16765	850	12132	12225	16412	16412					0.0010606131500026095
GENLPPLTY	9	Unmodified	_GENLPPLTY_					0	0	0		ENST00000419457.1_1_13:29296686-29297403:-|nuORF;nc|ENSG00000001630|Q16850-2|CYP51A1;ENSG00000001630|ENST00000003100|CYP51A1	ENST00000419457.1_1_13:29296686-29297403:-|nuORF	ENST00000419457.1_1_13:29296686-29297403:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	502.69500732421875	2	502.258382	1002.50221	-0.48334	-0.00024276	0.24518	0.00012314	-0.23817	-0.00011962	502.25843876820426	86.519	1.3744	87.252	86.642	88.017	0.733					79	26	4	0	0	0	0.03341	1	33016	33016		103.42	36.963	1	18713000			16766	850	12132	12225	16413	16413					0.0010606131500026095
GENPIPIFF	9	Unmodified	_GENPIPIFF_					0	0	0		ENSG00000159459|ENST00000290650|UBR1	ENSG00000159459|ENST00000290650|UBR1	ENSG00000159459|ENST00000290650|UBR1	MULTI-MSMS	A375_MHC_IP_R2	2	517.6714477539062	2	517.271293	1032.52803	-0.72588	-0.00037548	0.59223	0.00030634	-0.13366	-6.9137E-05	517.2715731117698	131.53	0.20456	131.72	131.59	131.8	0.18953					6	3	2	0	0	0	0.19747	1	51769	51769		38.176	9.6887	1	5965700			16767	6373	12133	12226	16414	16414					0.013069555572883473
GENPIPIFF	9	Unmodified	_GENPIPIFF_					0	0	0		ENSG00000159459|ENST00000290650|UBR1	ENSG00000159459|ENST00000290650|UBR1	ENSG00000159459|ENST00000290650|UBR1	MULTI-MATCH	A375_MHC_IP_R1	1		2	517.271293	1032.52803	-0.76713	-0.00039681	-0.10067	-5.2072E-05	-0.8678	-0.00044889	517.2711307899348	131.74	0.15173	131.74	131.63	131.78	0	0.0079918	-0.00055828	NaN	38.176	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3787700			16768	6373	12133	12226							0.013069555572883473
GENPNPNDW	9	Unmodified	_GENPNPNDW_					0	0	0		nc|ENSG00000048028|Q96RU2-2|USP28;USP28|p.V940Gfs*26|1|0.33|ENSG00000048028|chr11:113803201-113803202|-/C|frameshift_variant;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28;nc|ENSG00000048028|Q96RU2-3|USP28	nc|ENSG00000048028|Q96RU2-2|USP28	nc|ENSG00000048028|Q96RU2-2|USP28	MULTI-SECPEP	A375_MHC_IP_R2	2	522.114501953125	2	521.71487	1041.41519	-0.58818	-0.00030686	-0.5602	-0.00029227	-1.1484	-0.00059913	521.7145067373464	48.448	0.55557	49.205	48.929	49.485	0.75737					14	10	2	0	0	0	0.65527	1	18230	18230		17.113	10.39	1	2466800			16769	14463	12134	12227	16415	16415					-0.1038634490671484
GENPNPNDW	9	Unmodified	_GENPNPNDW_					0	0	0		nc|ENSG00000048028|Q96RU2-2|USP28;USP28|p.V940Gfs*26|1|0.33|ENSG00000048028|chr11:113803201-113803202|-/C|frameshift_variant;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28;nc|ENSG00000048028|Q96RU2-3|USP28	nc|ENSG00000048028|Q96RU2-2|USP28	nc|ENSG00000048028|Q96RU2-2|USP28	MULTI-MATCH	A375_MHC_IP_R1	1		2	521.71487	1041.41519	0.0011498	5.9989E-07	-0.42102	-0.00021965	-0.41987	-0.00021905	521.7145099693038	49	0.50537	49	48.729	49.235	0	-0.10244	0.00010536	NaN	17.113	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1370600			16770	14463	12134	12227							-0.1038634490671484
GENRAVIHY	9	Unmodified	_GENRAVIHY_					0	0	0		ENST00000465395.5_1_2:219082193-219103574:+|nuORF;ENSG00000163466|ENST00000315717|ARPC2	ENST00000465395.5_1_2:219082193-219103574:+|nuORF	ENST00000465395.5_1_2:219082193-219103574:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	530.1722412109375	2	529.772522	1057.53049	-0.6408	-0.00033948	-0.27311	-0.00014469	-0.91391	-0.00048416	529.7722508483885	24.723	0.35547	24.723	24.597	24.953	0					12	6	3	0	0	0	0.65527	1	7118	7118		22.736	3.4793	1	6002600			16771	6667	12135	12228	16416	16416					0.004028040149478329
GENRAVIHY	9	Unmodified	_GENRAVIHY_					0	0	0		ENST00000465395.5_1_2:219082193-219103574:+|nuORF;ENSG00000163466|ENST00000315717|ARPC2	ENST00000465395.5_1_2:219082193-219103574:+|nuORF	ENST00000465395.5_1_2:219082193-219103574:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	529.772522	1057.53049	-0.83711	-0.00044348	-0.54995	-0.00029135	-1.3871	-0.00073483	529.7720669721444	24.086	0.20405	24.73	24.602	24.806	0.64368	0.0033894	-0.00019553	NaN	29.082	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3372800			16772	6667	12135	12228							0.004028040149478329
GENSAVLHY	9	Unmodified	_GENSAVLHY_					0	0	0		nc|ENSG00000124299|P12955-3|PEPD;nc|ENSG00000124299|P12955-2|PEPD;ENSG00000124299|ENST00000244137|PEPD	nc|ENSG00000124299|P12955-3|PEPD	nc|ENSG00000124299|P12955-3|PEPD	MULTI-MSMS	A375_MHC_IP_R1	1	495.6376953125	2	495.237981	988.461409	-0.61198	-0.00030307	0.39711	0.00019666	-0.21487	-0.00010641	495.23799171652416	36.82	0.50401	36.82	36.592	37.096	0					25	9	3	0	0	0	0.0095277	1	12326	12326		108	55.729	1	11783000			16773	3892	12136	12229	16417	16417					-0.03328280004609496
GENSAVLHY	9	Unmodified	_GENSAVLHY_					0	0	0		nc|ENSG00000124299|P12955-3|PEPD;nc|ENSG00000124299|P12955-2|PEPD;ENSG00000124299|ENST00000244137|PEPD	nc|ENSG00000124299|P12955-3|PEPD	nc|ENSG00000124299|P12955-3|PEPD	MULTI-MSMS	A375_MHC_IP_R2	2	495.6375427246094	2	495.237981	988.461409	-0.6075	-0.00030085	0.16525	8.1838E-05	-0.44225	-0.00021902	495.2378802895433	36.038	0.56171	36.801	36.486	37.048	0.76338					22	10	3	0	0	0	0.01001	1	13068	13068		123.45	63.061	1	12624000			16774	3892	12136	12229	16418	16418					-0.03328280004609496
GENSGIGKLF	10	Unmodified	_GENSGIGKLF_					0	0	0		ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	MULTI-MSMS	A375_MHC_IP_R1	1	511.66925048828125	2	511.269281	1020.52401	-0.65988	-0.00033738	0.25139	0.00012853	-0.40849	-0.00020885	511.26933660518665	66.48	0.71323	66.48	66.122	66.836	0					29	13	3	0	0	0	2.7733E-05	1	24055	24055		159.1	84.172	1	5708700			16775	4196	12137	12230	16419	16419					0.014568660635859487
GENSGIGKLF	10	Unmodified	_GENSGIGKLF_					0	0	0		ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	MULTI-MSMS	A375_MHC_IP_R2	2	511.6689758300781	2	511.269281	1020.52401	-0.90855	-0.00046451	0.27902	0.00014265	-0.62953	-0.00032186	511.26939835941903	65.552	0.65978	66.29	65.917	66.577	0.73811					30	12	3	0	0	0	2.7733E-05	1	24828	24828		159.1	84.172	1	6401500			16776	4196	12137	12230	16420	16420					0.014568660635859487
GENTGIVKKF	10	Unmodified	_GENTGIVKKF_					0	0	0		nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	nc|ENSG00000091490|Q68CR1-2|SEL1L3	nc|ENSG00000091490|Q68CR1-2|SEL1L3	MULTI-MSMS	A375_MHC_IP_R1	1	365.2731628417969	3	364.873113	1091.59751	0.066619	2.4308E-05	0.087565	3.195E-05	0.15418	5.6258E-05	364.8731461356932	27.704	0.60534	27.704	27.432	28.037	0					23	11	3	0	0	0	0.33265	1	8425	8425		27.088	12.683	1	10818000			16777	1980	12138	12231	16421	16421					0.05537414506034111
GENTGIVKKF	10	Unmodified	_GENTGIVKKF_					0	0	0		nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	nc|ENSG00000091490|Q68CR1-2|SEL1L3	nc|ENSG00000091490|Q68CR1-2|SEL1L3	MULTI-SECPEP	A375_MHC_IP_R1	1	547.2053833007812	2	546.806031	1091.59751	-0.68164	-0.00037272	-0.31052	-0.00016979	-0.99216	-0.00054252	546.8058599599643	27.659	0.35343	27.659	27.533	27.887	0					15	6	3	0	0	0	0.085782	1	8450	8450		83.278	59.257	1	3557600			16778	1980	12138	12231	16422	16422					0.05537414506034111
GENTGIVKKF	10	Unmodified	_GENTGIVKKF_					0	0	0		nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	nc|ENSG00000091490|Q68CR1-2|SEL1L3	nc|ENSG00000091490|Q68CR1-2|SEL1L3	MULTI-MSMS	A375_MHC_IP_R2	2	365.27313232421875	3	364.873113	1091.59751	-0.094453	-3.4463E-05	0.1801	6.5713E-05	0.085645	3.1249E-05	364.8731503855659	27.02	0.51158	27.692	27.478	27.99	0.67222					25	9	4	0	0	0	0.17669	1	9188	9188		37.771	22.033	1	13850000			16779	1980	12138	12231	16423	16423					0.05537414506034111
GENTGIVKKF	10	Unmodified	_GENTGIVKKF_					0	0	0		nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	nc|ENSG00000091490|Q68CR1-2|SEL1L3	nc|ENSG00000091490|Q68CR1-2|SEL1L3	MULTI-SECPEP	A375_MHC_IP_R2	2	547.2059936523438	2	546.806031	1091.59751	-0.90307	-0.0004938	0.29314	0.00016029	-0.60993	-0.00033351	546.8062154522992	27.008	0.40958	27.676	27.525	27.935	0.66797					11	7	2	0	0	0	0.058649	1	9203	9203		79.427	61.281	1	3203400			16780	1980	12138	12231	16424	16424					0.05537414506034111
GENTMCVRY	9	Unmodified	_GENTMCVRY_					0	0	0			REV__ENSG00000169154|ENST00000307599|GOT1L1	REV__ENSG00000169154|ENST00000307599|GOT1L1	MSMS	A375_MHC_IP_R1	1	536.6586303710938	2	536.731151	1071.44775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.573	1	77.573	77.073	78.073	0								0	0	0	0.15486	1	28301	28301		11.64	0	1		+		16781	20910	12139	12232	16425	16425					-0.08511597099709434
GENVAVKIF	9	Unmodified	_GENVAVKIF_					0	0	0		ENSG00000115170|ENST00000434821|ACVR1	ENSG00000115170|ENST00000434821|ACVR1	ENSG00000115170|ENST00000434821|ACVR1	MULTI-MSMS	A375_MHC_IP_R2	2	489.17626953125	2	488.776742	975.538931	-0.46507	-0.00022731	-0.38243	-0.00018692	-0.8475	-0.00041424	488.7764577855936	69.018	0.45707	69.753	69.474	69.932	0.73511					14	8	2	0	0	0	0.095851	1	26180	26180		51.415	20.779	1	2111800			16782	3278	12140	12233	16426	16426					0.05018357931578521
GENVIISHF	9	Unmodified	_GENVIISHF_					0	0	0		ENSG00000177666|ENST00000336615|PNPLA2;STIM1-PNPLA2|1|fusion;ENST00000525250.5_1_11:821680-823850:+|nuORF	ENSG00000177666|ENST00000336615|PNPLA2	ENSG00000177666|ENST00000336615|PNPLA2	MULTI-SECPEP	A375_MHC_IP_R1	1	508.6640930175781	2	508.263999	1014.51345	-0.78913	-0.00040109	0.26177	0.00013305	-0.52736	-0.00026804	508.2641073512865	67.78	1.2168	67.78	67.399	68.616	0					71	23	4	0	0	0	0.011451	1	24510	24510		107.19	71.06	1	63516000			16783	8099	12141	12234	16427	16427					0.006768834091417375
GENVIISHF	9	Unmodified	_GENVIISHF_					0	0	0		ENSG00000177666|ENST00000336615|PNPLA2;STIM1-PNPLA2|1|fusion;ENST00000525250.5_1_11:821680-823850:+|nuORF	ENSG00000177666|ENST00000336615|PNPLA2	ENSG00000177666|ENST00000336615|PNPLA2	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9801025390625	2	508.263999	1014.51345	-0.81091	-0.00041216	0.23392	0.0001189	-0.57699	-0.00029326	508.2640961068875	66.882	1.7303	67.618	66.831	68.562	0.73631					98	33	5	0	0	0	0.011405	1	25399	25399		110.67	74.548	1	88767000			16784	8099	12141	12234	16428	16428					0.006768834091417375
GEPDHTTVTN	10	Unmodified	_GEPDHTTVTN_					0	0	0		nc|ENSG00000069188|Q58EX2-3|SDK2;ENSG00000069188|ENST00000392650|SDK2;nc|ENSG00000069188|Q58EX2-4|SDK2	nc|ENSG00000069188|Q58EX2-3|SDK2	nc|ENSG00000069188|Q58EX2-3|SDK2	MSMS	A375_MHC_IP_R1	1	535.6669921875	2	535.741085	1069.46762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.434	1	46.434	45.934	46.934	0								0	0	0	0.14741	1	16292	16292		22.736	6.8891	1				16785	1474	12142	12235	16429	16429					-0.06433806563745748
GEPEKELSL	9	Unmodified	_GEPEKELSL_					0	0	0		nc|ENSG00000079263|Q13342-5|SP140;ENSG00000079263|ENST00000392045|SP140;SP140|p.E371K|1|0.92|ENSG00000079263|chr2:230253369-230253369|G/A|missense_variant	nc|ENSG00000079263|Q13342-5|SP140	nc|ENSG00000079263|Q13342-5|SP140	MULTI-MSMS	A375_MHC_IP_R2	2	502.20220947265625	2	501.261122	1000.50769	-0.58222	-0.00029184	0.86546	0.00043382	0.28324	0.00014198	501.26156912374984	67.447	1.219	68.183	67.75	68.969	0.73631					57	23	4	0	0	0	0.58047	1	25404	25404		15.847	1.0089	1	12268000			16786	1691	12143	12236	16430	16430					0.007457401068336367
GEPFIHVWDG	10	Unmodified	_GEPFIHVWDG_					0	0	0			REV__ENST00000426231.5_2_X:153641633-153647973:+|nuORF	REV__ENST00000426231.5_2_X:153641633-153647973:+|nuORF	MSMS	A375_MHC_IP_R2	2	578.7050170898438	2	578.774731	1155.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.997	1	54.748	54.248	55.248	0.75105								0	0	0	0.14601	1	20384	20384		25.399	3.8623	1		+		16787	17208	12144	12237	16431	16431					-0.036637315621419475
GEPGPLVLVLV	11	Unmodified	_GEPGPLVLVLV_					0	0	0			REV__IRGQ|p.L450Pfs*101|1|0.27|ENSG00000167378|chr19:43592548-43592551|GAGC/-|frameshift_variant	REV__IRGQ|p.L450Pfs*101|1|0.27|ENSG00000167378|chr19:43592548-43592551|GAGC/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	364.9232177734375	3	364.893625	1091.65905	-0.0017076	-6.2311E-07	-0.88494	-0.00032291	-0.88665	-0.00032353	365.22813571462683	32.198	0.20531	32.935	32.755	32.96	0.73692					5	3	2	0	0	0	0.9889	1	11413	11413		4.1166	2.3744	1	938100	+		16788	20754	12145	12238	16432	16432					0.11688346205323796
GEPGWPFLF	9	Unmodified	_GEPGWPFLF_					0	0	0		ENST00000535977.5_1_16:677649-677925:+|nuORF	ENST00000535977.5_1_16:677649-677925:+|nuORF	ENST00000535977.5_1_16:677649-677925:+|nuORF	MSMS	A375_MHC_IP_R1	1	525.2111206054688	2	525.258185	1048.50182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.484	1	96.484	95.984	96.984	0								0	0	0	0.15486	1	35458	35458		13.508	0	1				16789	13234	12146	12239	16433	16433					-0.020493136142022195
GEPIVEVLK	9	Unmodified	_GEPIVEVLK_					0	0	0			REV__ENSG00000145996|ENST00000274695|CDKAL1	REV__ENSG00000145996|ENST00000274695|CDKAL1	MULTI-MSMS	A375_MHC_IP_R2	2	492.6917724609375	2	492.292225	982.569897	-0.48257	-0.00023757	-0.24501	-0.00012062	-0.72759	-0.00035819	492.2920771799374	108.59	0.40531	109.34	109.11	109.52	0.74684					13	7	2	0	0	0	0.22013	1	41032	41032		36.506	9.6225	1	1330000	+		16790	19510	12147	12240	16434	16434					0.07791511245795846
GEPIVEVLK	9	Unmodified	_GEPIVEVLK_					0	0	0			REV__ENSG00000145996|ENST00000274695|CDKAL1	REV__ENSG00000145996|ENST00000274695|CDKAL1	MULTI-MATCH	A375_MHC_IP_R1	1		2	492.292225	982.569897	-0.11471	-5.6469E-05	-0.40817	-0.00020094	-0.52288	-0.00025741	492.2920346408361	109.45	0.51067	109.45	109.17	109.68	0	0.053247	-7.2153E-05	NaN	36.506	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1167600	+		16791	19510	12147	12240							0.07791511245795846
GEPIVEVLK	9	Unmodified	_GEPIVEVLK_					0	0	0			REV__ENSG00000145996|ENST00000274695|CDKAL1	REV__ENSG00000145996|ENST00000274695|CDKAL1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	492.292225	982.569897	-0.48257	-0.00023757	-0.24501	-0.00012062	-0.72759	-0.00035819	492.2920771799374	108.59	0.40531	109.34	109.11	109.52	0.74684	-0.053247	8.8492E-05	NaN	36.506	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1330000	+		16792	19510	12147	12240							0.07791511245795846
GEPPPVVVW	9	Unmodified	_GEPPPVVVW_					0	0	0		ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-4|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;nc|ENSG00000124006|O75147-1|OBSL1	ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-1|OBSL1	ENSG00000124006|ENST00000404537|OBSL1	MULTI-MSMS	A375_MHC_IP_R1	1	490.6842956542969	2	490.26601	978.517468	-0.082	-4.0202E-05	0.2646	0.00012972	0.1826	8.9522E-05	490.26611931379944	107.13	1.0724	107.13	106.42	107.49	0					29	20	2	0	0	0	0.13491	1	39311	39311		44.407	15.325	1	1008000			16793	3867;14575	12148	12241	16435	16435					0.027349729028628644
GEPPPVVVW	9	Unmodified	_GEPPPVVVW_					0	0	0		ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-4|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;nc|ENSG00000124006|O75147-1|OBSL1	ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-1|OBSL1	ENSG00000124006|ENST00000404537|OBSL1	MULTI-MATCH	A375_MHC_IP_R2	2		2	490.26601	978.517468	-0.57344	-0.00028114	0.25879	0.00012687	-0.31465	-0.00015426	490.2659238537212	106.16	1.0197	106.92	106.42	107.44	0.75977	-0.10125	-2.6909E-06	NaN	44.407	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	945770			16794	3867;14575	12148	12241							0.027349729028628644
GEPQFRNLAS	10	Unmodified	_GEPQFRNLAS_					0	0	0			REV__ENSG00000244694|ENST00000339488|PTCHD4	REV__ENSG00000244694|ENST00000339488|PTCHD4	MSMS	A375_MHC_IP_R1	1	559.8570556640625	2	559.783087	1117.55162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.759	1	95.759	95.259	96.259	0								0	0	0	0.15372	1	35196	35196		8.7454	0.15213	1		+		16795	22827	12149	12242	16436	16436					-0.0024523067618247296
GEPVDGKDTV	10	Unmodified	_GEPVDGKDTV_					0	0	0			REV__nc|ENSG00000211752|A0A0K0K1C4|TRBV27	REV__nc|ENSG00000211752|A0A0K0K1C4|TRBV27	MULTI-MSMS	A375_MHC_IP_R1	1	508.6638488769531	2	508.748379	1015.4822	-0.62412	-0.00031752	-0.060864	-3.0965E-05	-0.68499	-0.00034849	508.7482516377971	68.371	0.5586	68.371	68.159	68.717	0					16	10	2	0	0	0	0.70329	1	24721	24721		10.824	0	1	1229100	+		16796	27472	12150	12243	16437	16437					-0.0249173441561652
GEPVDGKDTV	10	Unmodified	_GEPVDGKDTV_					0	0	0			REV__nc|ENSG00000211752|A0A0K0K1C4|TRBV27	REV__nc|ENSG00000211752|A0A0K0K1C4|TRBV27	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	508.748379	1015.4822	-0.62412	-0.00031752	-0.060864	-3.0965E-05	-0.68499	-0.00034849	508.7482516377971	68.371	0.5586	68.371	68.159	68.717	0	-0.042986	0.00020436	NaN	10.824	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1229100	+		16797	27472	12150	12243							-0.0249173441561652
GEQDEENDDY	10	Unmodified	_GEQDEENDDY_					0	0	0		ENSG00000187792|ENST00000341976|ZNF70	ENSG00000187792|ENST00000341976|ZNF70	ENSG00000187792|ENST00000341976|ZNF70	MSMS	A375_MHC_IP_R1	1	607.2401733398438	2	607.210012	1212.40547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.202	1	70.202	69.702	70.702	0								0	0	0	0.15591	1	25486	25486		1.6526	0	1				16798	8858	12151	12244	16438	16438					-0.19223622493404946
GEQELFVQF	9	Unmodified	_GEQELFVQF_					0	0	0		ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	MULTI-MSMS	A375_MHC_IP_R2	2	549.1685791015625	2	548.769114	1095.52368	-0.68843	-0.00037779	-0.0097465	-5.3486E-06	-0.69818	-0.00038314	548.7690278800061	118.28	0.40672	118.89	118.74	119.15	0.60909					10	7	2	0	0	0	0.012447	1	44913	44913		93.166	55.192	1	4769500			16799	9564	12152	12245	16439	16439					-0.02026553656287433
GEQELFVQF	9	Unmodified	_GEQELFVQF_					0	0	0		ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	MULTI-MATCH	A375_MHC_IP_R1	1		2	548.769114	1095.52368	-0.56507	-0.00031009	-0.63213	-0.00034689	-1.1972	-0.00065699	548.7687726222093	119.02	0.40569	119.02	118.83	119.23	0	0.066814	-0.00046689	NaN	93.166	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5993100			16800	9564	12152	12245							-0.02026553656287433
GEQGYIRLI	9	Unmodified	_GEQGYIRLI_					0	0	0		ENSG00000197329|ENST00000358912|PELI1	ENSG00000197329|ENST00000358912|PELI1	ENSG00000197329|ENST00000358912|PELI1	MULTI-SECPEP	A375_MHC_IP_R1	1	525.1922607421875	2	524.792924	1047.57129	-0.50598	-0.00026554	-0.45249	-0.00023747	-0.95848	-0.000503	524.7927519045459	75.84	0.50307	75.84	75.514	76.017	0					16	9	2	0	0	0	0.13244	1	27624	27624		67.838	27.881	1	5947900			16801	9146	12153	12246	16440	16440					0.049411453345555856
GEQSGKTAFEY	11	Unmodified	_GEQSGKTAFEY_					0	0	0			REV__ENSG00000053254|ENST00000557258|FOXN3	REV__ENSG00000053254|ENST00000557258|FOXN3	MSMS	A375_MHC_IP_R1	1	608.7844848632812	2	608.777667	1215.54078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.635	1	97.635	97.135	98.135	0								0	0	0	0.16249	1	35870	35870		5.7319	0	1		+		16802	16395	12154	12247	16441	16441					-0.0583667784114823
GEQWVTMNL	9	Unmodified	_GEQWVTMNL_					0	0	0			REV__ENSG00000196739|ENST00000356083|COL27A1	REV__ENSG00000196739|ENST00000356083|COL27A1	MULTI-SECPEP	A375_MHC_IP_R2	2	359.9288330078125	3	359.839303	1076.49608	-0.59884	-0.00021549	-0.77173	-0.0002777	-1.3706	-0.00049319	359.8389588494984	24.884	0.81502	25.527	25.161	25.976	0.64368					36	15	3	0	0	0	0.71541	1	8117	8117		4.5289	0	1	8161800	+		16803	22228	12155	12248	16442	16442					-0.03910780188175522
GERAEDFVF	9	Unmodified	_GERAEDFVF_					0	0	0		ENSG00000186765|ENST00000417245|FSCN2;nc|ENSG00000186765|O14926-2|FSCN2	ENSG00000186765|ENST00000417245|FSCN2	ENSG00000186765|ENST00000417245|FSCN2	MULTI-MSMS	A375_MHC_IP_R1	1	535.650390625	2	535.251089	1068.48762	-0.24435	-0.00013079	-0.97428	-0.00052149	-1.2186	-0.00065228	535.2504510962705	113.31	0.60767	113.31	112.99	113.6	0					25	11	3	0	0	0	0.4867	1	41499	41499		20.454	1.1966	1	6581900			16804	8773	12156	12249	16443	16443					-0.043880108331450174
GERDVEVERW	10	Unmodified	_GERDVEVERW_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R1	1	425.6277770996094	3	425.542314	1273.60511	0.030145	1.2828E-05	-0.065944	-2.8062E-05	-0.035798	-1.5234E-05	425.54226066970335	35.907	0.30558	35.907	35.727	36.033	0					9	5	2	0	0	0	0.8604	1	11989	11989		20.411	12.124	1	2002300			16805	14788	12157	12250	16444	16444					-0.020744779643337097
GERIKIQLW	9	Unmodified	_GERIKIQLW_					0	0	0		ENSG00000172007|ENST00000305626|RAB33B	ENSG00000172007|ENST00000305626|RAB33B	ENSG00000172007|ENST00000305626|RAB33B	MULTI-SECPEP	A375_MHC_IP_R2	2	572.2377319335938	2	571.837665	1141.66078	-0.26276	-0.00015025	-0.63703	-0.00036428	-0.89979	-0.00051453	571.8373323322098	76.177	0.66043	76.918	76.538	77.199	0.74052					22	12	3	0	0	0	0.34746	1	28902	28902		45.7	1.9272	1	6547500			16806	7670	12158	12251	16445	16445					0.09561400013944876
GERLNRDW	8	Unmodified	_GERLNRDW_					0	0	0			REV__ENST00000374791.7_1_11:132205045-132205564:+|nuORF	REV__ENST00000374791.7_1_11:132205045-132205564:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	522.6903076171875	2	523.262322	1044.51009	-0.89034	-0.00046588	1.691	0.00088483	0.80063	0.00041894	523.2634630530429	67.9	0.50481	67.9	67.654	68.159	0					13	9	2	0	0	0	0.96266	1	24653	24653		7.2892	0.56607	1	831260	+		16807	24115	12159	12252	16446	16446					-0.010383666448660733
GERLRGPLPP	10	Unmodified	_GERLRGPLPP_					0	0	0		nc|ENSG00000169246|Q92617-5|NPIPB3;ENSG00000169203|ENST00000550665|NPIPB12;nc|ENSG00000169246|Q92617-6|NPIPB3;nc|ENSG00000169246|Q92617|NPIPB3;ENSG00000243716|ENST00000424340|NPIPB5;nc|ENSG00000243716|C9JG80|NPIPB4;ENSG00000198064|ENST00000697092|NPIPB13;ENSG00000185864|ENST00000682606|NPIPB4	nc|ENSG00000169246|Q92617-5|NPIPB3	nc|ENSG00000169246|Q92617-5|NPIPB3	MULTI-SECPEP	A375_MHC_IP_R1	1	546.71875	2	546.31964	1090.62473	-0.66687	-0.00036432	-0.16176	-8.8371E-05	-0.82863	-0.00045269	546.3194117881401	28.909	0.50619	28.909	28.592	29.098	0					25	9	4	0	0	0	0.83355	1	8951	8951		17.113	3.2068	1	5773500			16808	7389	12160	12253	16447	16447					0.08303942837073919
GERLRGPLPP	10	Unmodified	_GERLRGPLPP_					0	0	0		nc|ENSG00000169246|Q92617-5|NPIPB3;ENSG00000169203|ENST00000550665|NPIPB12;nc|ENSG00000169246|Q92617-6|NPIPB3;nc|ENSG00000169246|Q92617|NPIPB3;ENSG00000243716|ENST00000424340|NPIPB5;nc|ENSG00000243716|C9JG80|NPIPB4;ENSG00000198064|ENST00000697092|NPIPB13;ENSG00000185864|ENST00000682606|NPIPB4	nc|ENSG00000169246|Q92617-5|NPIPB3	nc|ENSG00000169246|Q92617-5|NPIPB3	MULTI-SECPEP	A375_MHC_IP_R2	2	546.718994140625	2	546.31964	1090.62473	-0.99645	-0.00054438	-0.19436	-0.00010618	-1.1908	-0.00065056	546.3196522236632	28.104	0.55784	28.782	28.502	29.06	0.67857					20	10	3	0	0	0	0.83355	1	9678	9678		12.241	0	1	7252100			16809	7389	12160	12253	16448	16448					0.08303942837073919
GERRRRLRKR	10	Unmodified	_GERRRRLRKR_					0	0	0			REV__ENSG00000186452|ENST00000398458|TMPRSS12	REV__ENSG00000186452|ENST00000398458|TMPRSS12	MSMS	A375_MHC_IP_R1	1	691.7586669921875	2	691.937434	1381.86031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.09	1	100.09	99.592	100.59	0								0	0	0	0.15596	1	36782	36782		1.4819	0.15237	1		+		16810	21970	12161	12254	16449	16449					0.18465892805033945
GERRRRRRREA	11	Unmodified	_GERRRRRRREA_					0	0	0			REV__ENST00000590333.5_3_19:55795372-55798434:+|nuORF	REV__ENST00000590333.5_3_19:55795372-55798434:+|nuORF	MSMS	A375_MHC_IP_R2	2	499.9830322265625	3	499.961312	1496.86211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.527	1	27.187	26.687	27.687	0.65992								0	0	0	0.16312	1	8972	8972		1.0136	0.50762	1		+		16811	26431	12162	12255	16450	16450					0.1335490182302692
GERWFTRVA	9	Unmodified	_GERWFTRVA_					0	0	0			REV__ENST00000369750.3_1_6:83073582-83074524:+|nuORF	REV__ENST00000369750.3_1_6:83073582-83074524:+|nuORF	MSMS	A375_MHC_IP_R1	1	374.4335021972656	3	374.533202	1120.57778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.155	1	42.155	41.655	42.655	0								0	0	0	0.15486	1	14593	14593		4.5289	0.33936	1		+		16812	24013	12163	12256	16451	16451					0.02231083285960267
GESAKKFI	8	Unmodified	_GESAKKFI_					0	0	0			REV__MAGEB2|p.L153F|1|0.28|ENSG00000099399|chrX:30219037-30219037|C/T|missense_variant	REV__MAGEB2|p.L153F|1|0.28|ENSG00000099399|chrX:30219037-30219037|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	440.59539794921875	2	440.25036	878.486168	-0.43431	-0.0001912	-0.57551	-0.00025337	-1.0098	-0.00044457	440.2498448587229	62.399	0.40711	63.142	62.976	63.383	0.74263					11	7	2	0	0	0	0.8957	1	23730	23730		21.747	3.6117	1	521560	+		16813	26975	12164	12257	16452	16452					0.04206399868758126
GESDPAYQQY	10	Unmodified	_GESDPAYQQY_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	A375_MHC_IP_R1	1	579.6409301757812	2	579.240918	1156.46728	-0.073592	-4.2627E-05	0.057751	3.3452E-05	-0.015841	-9.1758E-06	579.2410016346228	38.647	0.56134	38.647	38.371	38.933	0					23	10	3	0	0	0	0.011373	1	13126	13126		121.53	67.701	1	5570800			16814	6152	12165	12258	16453	16453					-0.10469226283612443
GESDPAYQQY	10	Unmodified	_GESDPAYQQY_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	A375_MHC_IP_R2	2	579.6402587890625	2	579.240918	1156.46728	-0.51666	-0.00029927	0.0096214	5.5731E-06	-0.50704	-0.0002937	579.2408761495134	38.063	0.71647	38.837	38.534	39.25	0.77451					32	13	3	0	0	0	0.0055942	1	13963	13963		134.3	88.596	1	6427900			16815	6152	12165	12258	16454	16454					-0.10469226283612443
GESEVAIKI	9	Unmodified	_GESEVAIKI_					0	0	0		ENSG00000185052|ENST00000328041|SLC24A3	ENSG00000185052|ENST00000328041|SLC24A3	ENSG00000185052|ENST00000328041|SLC24A3	MULTI-MSMS	A375_MHC_IP_R1	1	473.66595458984375	2	473.266207	944.517862	-0.25113	-0.00011885	-0.079118	-3.7444E-05	-0.33025	-0.0001563	473.26600110027715	54.088	1.1653	54.088	53.605	54.771	0					55	22	4	0	0	0	0.0015808	1	19280	19280		155.03	0	1	44682000			16816	8637	12166	12259	16455	16455					0.04338347832026557
GESEVAIKI	9	Unmodified	_GESEVAIKI_					0	0	0		ENSG00000185052|ENST00000328041|SLC24A3	ENSG00000185052|ENST00000328041|SLC24A3	ENSG00000185052|ENST00000328041|SLC24A3	MULTI-MSMS	A375_MHC_IP_R2	2	473.6657409667969	2	473.266207	944.517862	-1.1474	-0.00054302	0.38564	0.00018251	-0.76176	-0.00036051	473.2662893267095	53.218	1.0241	53.969	53.688	54.712	0.75105					60	19	6	0	0	0	0.0078915	1	20042	20042		168.66	0	1	41850000			16817	8637	12166	12259	16456	16456					0.04338347832026557
GESGCWPFT	9	Unmodified	_GESGCWPFT_					0	0	0			REV__ENST00000397278.7_1_22:36650991-36653415:+|nuORF	REV__ENST00000397278.7_1_22:36650991-36653415:+|nuORF	MSMS	A375_MHC_IP_R1	1	492.1875305175781	2	492.20001	982.385467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.136	1	50.136	49.636	50.636	0								0	0	0	0.15486	1	17752	17752		11.64	2.2929	1		+		16818	24352	12167	12260	16457	16457					-0.10643000176401074
GESLESWLI	9	Unmodified	_GESLESWLI_					0	0	0		ENST00000580799.2_1_17:73239631-73257668:-|nuORF	ENST00000580799.2_1_17:73239631-73257668:-|nuORF	ENST00000580799.2_1_17:73239631-73257668:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1034.1986083984375	1	1033.52005	1032.51278	0.10249	0.00010593	0.23615	0.00024406	0.33864	0.00034999	1033.5189674253345	104.72	1.2711	105.49	105.21	106.48	0.76308					66	24	4	0	0	0	0.47368	1	39701	39701		34.102	3.4659	1	22178000			16819	13675	12168	12261	16458	16458					-0.00217956030564892
GESLGRAT	8	Unmodified	_GESLGRAT_					0	0	0		nc|ENSG00000140474|Q6PHR2-3|ULK3;ENSG00000140474|ENST00000440863|ULK3;nc|ENSG00000140474|Q6PHR2-4|ULK3;ENST00000565881.5_1_15:75130108-75132610:-|nuORF;ENST00000566479.5_1_15:75130108-75132610:-|nuORF	nc|ENSG00000140474|Q6PHR2-3|ULK3	nc|ENSG00000140474|Q6PHR2-3|ULK3	MULTI-MSMS	A375_MHC_IP_R1	1	790.8040771484375	1	790.405357	789.398081	-0.79335	-0.00062707	-0.0085553	-6.7622E-06	-0.8019	-0.00063383	790.4049716892958	146.9	0.11301	146.9	146.84	146.96	0					20	9	3	0	0	0	0.77842	1	56175	56175		0.69038	0	1	539230			16820	14641	12169	12262	16459	16459					-0.005042207218707517
GESLIRTAF	9	Unmodified	_GESLIRTAF_					0	0	0		nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;MON2|p.L1675Ffs*21|1|0.57|ENSG00000061987|chr12:62592617-62592618|-/T|frameshift_variant;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2	nc|ENSG00000061987|Q7Z3U7-2|MON2	nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-SECPEP	A375_MHC_IP_R1	1	497.671630859375	2	497.271824	992.529095	-0.75611	-0.00037599	0.20963	0.00010424	-0.54648	-0.00027175	497.27197401279903	67.703	0.6584	67.703	67.449	68.108	0					22	12	3	0	0	0	0.11887	1	24534	24534		71.708	33.734	1	3030500			16821	1324	12170	12263	16460	16460					0.03253169926199462
GESLIRTAF	9	Unmodified	_GESLIRTAF_					0	0	0		nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;MON2|p.L1675Ffs*21|1|0.57|ENSG00000061987|chr12:62592617-62592618|-/T|frameshift_variant;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2	nc|ENSG00000061987|Q7Z3U7-2|MON2	nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-SECPEP	A375_MHC_IP_R2	2	497.67169189453125	2	497.271824	992.529095	-0.578	-0.00028742	0.048834	2.4284E-05	-0.52917	-0.00026314	497.2717299358985	66.82	0.66072	67.556	67.24	67.9	0.73631					26	12	3	0	0	0	0.053555	1	25306	25306		80.676	38.836	1	3844800			16822	1324	12170	12263	16461	16461					0.03253169926199462
GESLSLKEL	9	Unmodified	_GESLSLKEL_					0	0	0			REV__ENST00000517325.5_1_8:23104188-23118109:+|nuORF	REV__ENST00000517325.5_1_8:23104188-23118109:+|nuORF	MSMS	A375_MHC_IP_R1	1	488.1791687011719	2	488.27149	974.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.264	1	54.264	53.764	54.764	0								0	0	0	0.13141	1	19363	19363		32.305	3.8186	1		+		16823	19588	12171	12264	16462	16462					0.0401433048649551
GESLSLKEL	9	Unmodified	_GESLSLKEL_					0	0	0			REV__ENST00000517325.5_1_8:23104188-23118109:+|nuORF	REV__ENST00000517325.5_1_8:23104188-23118109:+|nuORF	MSMS	A375_MHC_IP_R2	2	488.179443359375	2	488.27149	974.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.383	1	54.134	53.634	54.634	0.75105								0	0	0	0.107	1	20144	20144		39.957	7.6518	1		+		16824	19588	12171	12264	16463	16463					0.0401433048649551
GESMHMYTK	9	Unmodified	_GESMHMYTK_					0	0	0		PDHA2|p.G149E|1|0.44|ENSG00000163114|chr4:95840596-95840596|G/A|missense_variant	PDHA2|p.G149E|1|0.44|ENSG00000163114|chr4:95840596-95840596|G/A|missense_variant	PDHA2|p.G149E|1|0.44|ENSG00000163114|chr4:95840596-95840596|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	542.6323852539062	2	542.233527	1082.4525	-0.60843	-0.00032991	-0.34963	-0.00018958	-0.95805	-0.00051949	542.2332688867332	77.533	0.55711	77.533	77.133	77.69	0					16	10	2	0	0	0	0.67332	1	28249	28249		9.3831	1.7742	1	2359200			16825	15151	12172	12265	16464	16464					-0.08542712956955256
GESMPTFGKKF	11	Unmodified	_GESMPTFGKKF_					0	0	0		ENSG00000135048|ENST00000377044|CEMIP2;nc|ENSG00000135048|Q9UHN6-2|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	410.6058044433594	3	410.205875	1227.59579	0.04157	1.7052E-05	-0.16161	-6.6294E-05	-0.12004	-4.9242E-05	410.2057772395164	46.148	0.55415	46.148	45.941	46.495	0					18	10	3	0	0	0	0.97207	1	16208	16208		12.929	9.8564	1	3597600			16826	4638	12173	12266	16465	16465					-0.008899625742287753
GESMPTFGKKF	11	Unmodified	_GESMPTFGKKF_					0	0	0		ENSG00000135048|ENST00000377044|CEMIP2;nc|ENSG00000135048|Q9UHN6-2|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	MULTI-MSMS	A375_MHC_IP_R2	2	410.6058044433594	3	410.205875	1227.59579	-0.033067	-1.3564E-05	-0.093988	-3.8555E-05	-0.12706	-5.2119E-05	410.2058881993755	45.359	0.40591	46.124	45.947	46.353	0.76519					19	7	3	0	0	0	0.63742	1	16959	16959		20.411	14.627	1	7479400			16827	4638	12173	12266	16466	16466					-0.008899625742287753
GESPNHFLE	9	Unmodified	_GESPNHFLE_					0	0	0			REV__AMER3|p.D428N|1|0.32|ENSG00000178171|chr2:130763354-130763354|G/A|missense_variant	REV__AMER3|p.D428N|1|0.32|ENSG00000178171|chr2:130763354-130763354|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	515.6348876953125	2	515.235439	1028.45632	-0.41431	-0.00021347	0.63441	0.00032687	0.2201	0.0001134	515.2353177552579	42.416	0.96261	42.416	41.777	42.739	0					26	18	3	0	0	0	0.53367	1	14735	14735		18.146	2.2992	1	2313500	+		16828	15388	12174	12267	16467	16467					-0.05676583867216323
GESPPVTVTF	10	Unmodified	_GESPPVTVTF_					0	0	0			REV__ENSG00000142798|ENST00000374695|HSPG2	REV__ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	A375_MHC_IP_R2	2	517.6627807617188	2	517.263665	1032.51278	-0.68457	-0.00035411	0.020571	1.0641E-05	-0.664	-0.00034346	517.2635302260188	104.75	1.3222	105.51	105.16	106.48	0.76308					59	25	3	0	0	0	0.66712	1	39571	39571		15.847	0	1	17771000	+		16829	19325	12175	12268	16468	16468					-0.00217956030564892
GESQPVKMF	9	Unmodified	_GESQPVKMF_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	A375_MHC_IP_R1	1	512.1521606445312	2	511.75241	1021.49027	-0.040179	-2.0562E-05	-0.49645	-0.00025406	-0.53663	-0.00027462	511.7521031046456	48.621	0.55647	48.621	48.325	48.882	0					15	10	2	0	0	0	0.44024	1	17212	17212		22.736	2.2827	1	2266000			16830	5230	12176	12269	16469	16469					-0.01961878699830777
GESQPVKMF	9	Unmodified	_GESQPVKMF_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1515502929688	2	511.75241	1021.49027	-0.62602	-0.00032037	-0.597	-0.00030552	-1.223	-0.00062588	511.75204601665297	47.814	0.45771	48.576	48.275	48.733	0.76127					15	8	2	0	0	0	0.46045	1	17960	17960		29.082	16.039	1	3136500			16831	5230	12176	12269	16470	16470					-0.01961878699830777
GESQPVKMF	9	Unmodified	_GESQPVKMF_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	511.75241	1021.49027	-0.040179	-2.0562E-05	-0.49645	-0.00025406	-0.53663	-0.00027462	511.7521031046456	48.621	0.55647	48.621	48.325	48.882	0	0.022631	3.9676E-05	NaN	22.736	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2266000			16832	5230	12176	12269							-0.01961878699830777
GESQPVKMF	9	Oxidation (M)	_GESQPVKM(Oxidation (M))F_		GESQPVKM(1)F		GESQPVKM(68)F	0	0	1		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	A375_MHC_IP_R1	1	520.392333984375	2	519.749867	1037.48518	-0.72236	-0.00037545	0.25636	0.00013325	-0.466	-0.0002422	519.7498354239892	28.012	0.55412	28.012	27.684	28.238	0					17	10	2	0	0	0	0.0575	1	8593	8593		67.838	50.725	1	3082800			16833	5230	12176	12270	16471	16471		281			-0.03206182562462345
GESQTLQQF	9	Unmodified	_GESQTLQQF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-SECPEP	A375_MHC_IP_R1	1	519.6478881835938	2	519.248546	1036.48254	-0.33485	-0.00017387	-0.64716	-0.00033604	-0.98202	-0.00050991	519.2482481331949	54.188	1.3172	54.188	53.453	54.771	0					49	25	4	0	0	0	0.025235	1	19302	19302		85.642	45.684	1	13951000			16834	9183	12177	12271	16472	16472					-0.03424314695780595
GESQTLQQF	9	Unmodified	_GESQTLQQF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	A375_MHC_IP_R2	2	519.6483154296875	2	519.248546	1036.48254	-1.2225	-0.0006348	0.076716	3.9835E-05	-1.1458	-0.00059496	519.2485948888565	53.472	1.0723	54.223	53.588	54.661	0.75105					39	20	3	0	0	0	0.04447	1	20148	20148		66.457	41.057	1	16072000			16835	9183	12177	12271	16473	16473					-0.03424314695780595
GESRAIKIY	9	Unmodified	_GESRAIKIY_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;ENST00000264874.7_1_6:7397003-7402949:+|nuORF	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1921997070312	2	518.792924	1035.57129	-0.95874	-0.00049739	-0.038741	-2.0099E-05	-0.99748	-0.00051749	518.7928320482619	29.506	0.2539	29.506	29.353	29.607	0					7	4	2	0	0	0	0.41434	1	9271	9271		39.95	3.8227	1	14489000			16836	3929	12178	12272	16474	16474					0.05493145334571636
GESRAIKIY	9	Unmodified	_GESRAIKIY_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;ENST00000264874.7_1_6:7397003-7402949:+|nuORF	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1923217773438	2	518.792924	1035.57129	-1.343	-0.00069672	0.091139	4.7282E-05	-1.2518	-0.00064943	518.7929878626412	28.746	0.25029	29.444	29.283	29.534	0.69872					8	4	2	0	0	0	0.47674	1	9981	9981		29.841	11.694	1	11973000			16837	3929	12178	12272	16475	16475					0.05493145334571636
GESRTFRVF	9	Unmodified	_GESRTFRVF_					0	0	0		ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-SECPEP	A375_MHC_IP_R2	2	366.6484680175781	3	366.861207	1097.56179	0.022867	8.3889E-06	0.59504	0.0002183	0.61791	0.00022669	366.8611127687905	44.616	0.66215	45.385	45.239	45.901	0.7691					16	12	2	0	0	0	0.34746	1	16690	16690		35.612	12.954	1	2909700			16838	1066	12179	12273	16476	16476					0.016913770490418756
GESSFTYRAY	10	Unmodified	_GESSFTYRAY_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;SCAF11|p.N670Kfs*2|1|0.23|ENSG00000139218|chr12:45927691-45927692|-/T|frameshift_variant	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-SECPEP	A375_MHC_IP_R1	1	591.1670532226562	2	590.767103	1179.51965	0.13289	7.8508E-05	0.13291	7.8519E-05	0.2658	0.00015703	590.7671039816775	44.626	0.71196	44.626	44.318	45.03	0					43	13	4	0	0	0	0.015005	1	15525	15525		132.38	80.892	1	25207000			16839	5060	12180	12274	16477	16477					-0.06292643150004551
GESSFTYRAY	10	Unmodified	_GESSFTYRAY_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;SCAF11|p.N670Kfs*2|1|0.23|ENSG00000139218|chr12:45927691-45927692|-/T|frameshift_variant	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-SECPEP	A375_MHC_IP_R2	2	591.1666870117188	2	590.767103	1179.51965	-0.37154	-0.0002195	0.053638	3.1688E-05	-0.31791	-0.00018781	590.7670498897878	43.938	0.75685	44.707	44.329	45.086	0.7691					43	14	4	0	0	0	0.012511	1	16332	16332		136.39	81.157	1	29076000			16840	5060	12180	12274	16478	16478					-0.06292643150004551
GESSLIKQL	9	Unmodified	_GESSLIKQL_					0	0	0		ENSG00000189079|ENST00000334344|ARID2;ARID2|p.G1450Dfs*3|1|0.36|ENSG00000189079|chr12:45852471-45852471|G/-|frameshift_variant;ARID2|p.T1506Qfs*10|1|0.88|ENSG00000189079|chr12:45852638-45852638|T/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ARID2|p.T1216Sfs*27|1|0.32|ENSG00000189079|chr12:45851770-45851770|C/-|frameshift_variant;ARID2|p.V1265Efs*22|1|0.07|ENSG00000189079|chr12:45851916-45851940|GTCATGGAGAACCCGTCCTGCCGAC/-|frameshift_variant	ENSG00000189079|ENST00000334344|ARID2	ENSG00000189079|ENST00000334344|ARID2	MULTI-SECPEP	A375_MHC_IP_R1	1	488.1791687011719	2	487.779482	973.544411	-0.12014	-5.8601E-05	1.5647	0.00076323	1.4446	0.00070463	487.7799347571253	54.345	1.4706	54.345	53.25	54.72	0					50	28	3	0	0	0	0.010788	1	19363	19363		155.03	73.136	1	10536000			16841	8957	12181	12275	16479	16479					0.056580367233777906
GESTIFSI	8	Unmodified	_GESTIFSI_					0	0	0			REV__NFYB|p.A101G|1|0.18|ENSG00000120837|chr12:104123353-104123353|G/C|missense_variant	REV__NFYB|p.A101G|1|0.18|ENSG00000120837|chr12:104123353-104123353|G/C|missense_variant	MSMS	A375_MHC_IP_R2	2	427.1502685546875	2	427.218726	852.422899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.111	1	56.861	56.361	57.361	0.75015								0	0	0	0.16876	1	21204	21204		14.582	0	1		+		16842	27599	12182	12276	16480	16480					-0.00921585639150635
GESVIGKTY	9	Unmodified	_GESVIGKTY_					0	0	0		ENSG00000107863|ENST00000396432|ARHGAP21;nc|ENSG00000107863|Q5T5U3-3|ARHGAP21;ARHGAP21|p.S138F|1|0.33|ENSG00000107863|chr10:24633429-24633429|G/A|missense_variant;ENST00000476499.1_1_10:24918849-25010828:-|nuORF;ENST00000401578.2_1_6:80777785-80779717:-|nuORF;ENSG00000275832|ENST00000622683|ARHGAP23;nc|ENSG00000275832|Q9P227-2|ARHGAP23	ENSG00000107863|ENST00000396432|ARHGAP21;ENSG00000275832|ENST00000622683|ARHGAP23	ENSG00000107863|ENST00000396432|ARHGAP21	MULTI-MSMS	A375_MHC_IP_R1	1	477.6502380371094	2	477.250557	952.486562	-0.5631	-0.00026874	-0.30321	-0.00014471	-0.86631	-0.00041345	477.25057474092256	32.041	0.7155	32.041	31.718	32.434	0					36	13	4	0	0	0	0.0083527	2	10279	10279;10349		128.93	66.36	1	25300000			16843	2765;10013	12183	12277	16481;16482	16481					0.008417747979365231
GESVIGKTY	9	Unmodified	_GESVIGKTY_					0	0	0		ENSG00000107863|ENST00000396432|ARHGAP21;nc|ENSG00000107863|Q5T5U3-3|ARHGAP21;ARHGAP21|p.S138F|1|0.33|ENSG00000107863|chr10:24633429-24633429|G/A|missense_variant;ENST00000476499.1_1_10:24918849-25010828:-|nuORF;ENST00000401578.2_1_6:80777785-80779717:-|nuORF;ENSG00000275832|ENST00000622683|ARHGAP23;nc|ENSG00000275832|Q9P227-2|ARHGAP23	ENSG00000107863|ENST00000396432|ARHGAP21;ENSG00000275832|ENST00000622683|ARHGAP23	ENSG00000107863|ENST00000396432|ARHGAP21	MULTI-MSMS	A375_MHC_IP_R2	2	477.6502380371094	2	477.250557	952.486562	-0.56797	-0.00027106	-0.64133	-0.00030608	-1.2093	-0.00057714	477.2504850519912	31.333	0.61338	32.051	31.821	32.434	0.71857					34	11	4	0	0	0	0.0023519	1	11058	11058		140.63	71.528	1	33888000			16844	2765;10013	12183	12277	16483	16483					0.008417747979365231
GESVLKLTF	9	Unmodified	_GESVLKLTF_					0	0	0		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	497.6839904785156	2	497.2844	992.554247	-0.53852	-0.0002678	0.39221	0.00019504	-0.14631	-7.2757E-05	497.28454757727417	90.28	0.96227	90.28	89.78	90.742	0					43	18	4	0	0	0	0.074405	1	33093	33093		79.596	31.848	1	5841900			16845	2645	12184	12278	16484	16484					0.057672247287428036
GESVLKLTF	9	Unmodified	_GESVLKLTF_					0	0	0		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-MSMS	A375_MHC_IP_R2	2	497.6839904785156	2	497.2844	992.554247	-0.41169	-0.00020473	0.14336	7.1288E-05	-0.26833	-0.00013344	497.28437324316894	89.407	1.0128	90.139	89.635	90.648	0.7318					45	19	3	0	0	0	0.007896	1	33951	33951		129.77	67.2	1	5987400			16846	2645	12184	12278	16485	16485					0.057672247287428036
GESWFLVEKHW	11	Unmodified	_GESWFLVEKHW_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-SECPEP	A375_MHC_IP_R1	1	472.7002258300781	3	473.234822	1416.68264	-0.46022	-0.00021779	-0.43818	-0.00020736	-0.8984	-0.00042515	473.5688510605297	87.823	0.356	87.823	87.593	87.949	0					9	6	2	0	0	0	0.99607	1	32198	32198		5.5233	3.0885	1	1057900			16847	2365	12185	12279	16486	16486					-0.009038400281724535
GETAENGRQE	10	Unmodified	_GETAENGRQE_					0	0	0			REV__nc|ENSG00000157077|O95405-2|ZFYVE9	REV__nc|ENSG00000157077|O95405-2|ZFYVE9	MULTI-MSMS	A375_MHC_IP_R2	2	545.68798828125	2	545.741616	1089.46868	-0.70616	-0.00038538	0.30814	0.00016816	-0.39803	-0.00021722	545.7416270539493	68.028	0.81415	68.763	68.307	69.121	0.73512					33	15	3	0	0	0	0.70741	1	25637	25637		10.074	10.074	1	4154400	+		16848	20009	12186	12280	16487	16487					-0.07247592194835306
GETDEEKLF	9	Unmodified	_GETDEEKLF_					0	0	0		ENSG00000181610|ENST00000313608|MRPS23	ENSG00000181610|ENST00000313608|MRPS23	ENSG00000181610|ENST00000313608|MRPS23	MULTI-MSMS	A375_MHC_IP_R1	1	534.6484375	2	534.248212	1066.48187	-0.53458	-0.0002856	-2.9401	-0.0015708	-3.4747	-0.0018564	534.2483054918572	51.484	0.6605	51.484	51.168	51.829	0					30	12	3	0	0	0	0.04093	2	18253	18253;18305		67.838	20.089	1	5661500			16849	8353	12187	12281	16488;16489	16488					-0.04871154135480538
GETDEEKLF	9	Unmodified	_GETDEEKLF_					0	0	0		ENSG00000181610|ENST00000313608|MRPS23	ENSG00000181610|ENST00000313608|MRPS23	ENSG00000181610|ENST00000313608|MRPS23	MULTI-MSMS	A375_MHC_IP_R2	2	534.6480712890625	2	534.248212	1066.48187	-0.88207	-0.00047125	-2.074	-0.001108	-2.9561	-0.0015793	534.7473999228303	50.837	0.75829	51.591	51.209	51.968	0.75406					25	14	2	0	0	0	0.04093	1	19079	19079		67.838	27.39	1	2844100			16850	8353	12187	12281	16490	16490					-0.04871154135480538
GETDKKMLEET	11	Unmodified	_GETDKKMLEET_					0	0	0		tr|U7ST00|U7ST00_FUSNUNagDproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01658PE=3SV=1	tr|U7ST00|U7ST00_FUSNUNagDproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01658PE=3SV=1	tr|U7ST00|U7ST00_FUSNUNagDproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01658PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	427.93975830078125	3	427.539471	1279.59658	0.10117	4.3252E-05	0.95869	0.00040988	1.0599	0.00045313	427.5398462309731	21.354	0.45693	21.354	21.048	21.505	0					14	8	2	0	0	0	0.65093	1	5607	5607		11.631	1.3161	1	3238400			16851	29656	12188	12282	16491	16491					-0.03203212715834525
GETDTDEYD	9	Unmodified	_GETDTDEYD_					0	0	0			REV__nc|ENSG00000104067|Q07157-2|TJP1	REV__nc|ENSG00000104067|Q07157-2|TJP1	MSMS	A375_MHC_IP_R1	1	522.6366577148438	2	522.685641	1043.35673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.151	1	94.151	93.651	94.651	0								0	0	0	0.15486	1	34605	34605		3.9444	1.6417	1		+		16852	17301	12189	12283	16492	16492					-0.16321491062512905
GETDVYVNNEW	11	Unmodified	_GETDVYVNNEW_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	A375_MHC_IP_R1	1	663.6858520507812	2	663.285857	1324.55716	-0.65547	-0.00043476	0.56134	0.00037233	-0.094126	-6.2432E-05	663.2862435719207	80.844	0.61038	80.844	80.592	81.202	0					17	11	2	0	0	0	0.011102	1	29553	29553		121.35	107.73	1	1968200			16853	2847	12190	12284	16493	16493					-0.09213596675044755
GETDVYVNNEW	11	Unmodified	_GETDVYVNNEW_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-SECPEP	A375_MHC_IP_R2	2	662.6825561523438	2	663.285857	1324.55716	-0.88001	-0.0005837	0.533	0.00035353	-0.34702	-0.00023017	663.7877259938141	80.439	0.55621	81.183	80.86	81.416	0.74474					15	10	2	0	0	0	0.98782	1	30575	30575		19.362	14.065	1	1874500			16854	2847	12190	12284	16494	16494					-0.09213596675044755
GETELGHARW	10	Unmodified	_GETELGHARW_					0	0	0		ENST00000539387.5_1_4:140216240-140223649:-|nuORF	ENST00000539387.5_1_4:140216240-140223649:-|nuORF	ENST00000539387.5_1_4:140216240-140223649:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	386.25628662109375	3	385.856233	1154.54687	0.10019	3.8658E-05	0.025161	9.7085E-06	0.12535	4.8367E-05	385.85618915094295	32.308	0.40921	32.308	32.075	32.485	0					12	7	2	0	0	0	0.68963	1	10435	10435		24.957	12.782	1	7944500			16855	13261	12191	12285	16495	16495					-0.024221148189553787
GETELGHARW	10	Unmodified	_GETELGHARW_					0	0	0		ENST00000539387.5_1_4:140216240-140223649:-|nuORF	ENST00000539387.5_1_4:140216240-140223649:-|nuORF	ENST00000539387.5_1_4:140216240-140223649:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	578.6807861328125	2	578.280712	1154.54687	-0.23267	-0.00013455	-1.1765	-0.00068036	-1.4092	-0.00081491	578.2804100968816	31.538	0.51138	32.257	31.974	32.486	0.71857					13	9	2	0	0	0	0.41205	1	11198	11198		33.445	4.3633	1	3199100			16856	13261	12191	12285	16496	16496					-0.024221148189553787
GETELGHARW	10	Unmodified	_GETELGHARW_					0	0	0		ENST00000539387.5_1_4:140216240-140223649:-|nuORF	ENST00000539387.5_1_4:140216240-140223649:-|nuORF	ENST00000539387.5_1_4:140216240-140223649:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	386.25616455078125	3	385.856233	1154.54687	-0.15162	-5.8505E-05	0.10027	3.8688E-05	-0.051358	-1.9817E-05	385.85625635368825	31.565	0.4599	32.293	32.086	32.546	0.72827					16	8	3	0	0	0	0.73104	1	11161	11161		27.088	27.088	1	5801800			16857	13261	12191	12285	16497	16497					-0.024221148189553787
GETELKELHW	10	Unmodified	_GETELKELHW_					0	0	0		ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	MULTI-SECPEP	A375_MHC_IP_R1	1	414.94354248046875	3	414.543544	1240.6088	0.30496	0.00012642	-0.2941	-0.00012192	0.010854	4.4996E-06	414.87762849943954	59.261	0.51004	59.261	58.887	59.397	0					22	9	3	0	0	0	0.47871	1	21289	21289		51.488	43.044	1	2848800			16858	2608	12192	12286	16498	16498					-0.0018780819048060948
GETELKELHW	10	Unmodified	_GETELKELHW_					0	0	0		ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	MULTI-SECPEP	A375_MHC_IP_R1	1	621.1956787109375	2	621.311677	1240.6088	-0.46856	-0.00029112	-0.52044	-0.00032335	-0.98899	-0.00061447	621.3113932680307	59.192	0.40745	59.192	58.938	59.346	0					13	7	3	0	0	0	0.58566	1	21233	21233		39.213	18.759	1	1181400			16859	2608	12192	12286	16499	16499					-0.0018780819048060948
GETELKELHW	10	Unmodified	_GETELKELHW_					0	0	0		ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	MULTI-MSMS	A375_MHC_IP_R2	2	415.2776794433594	3	414.543544	1240.6088	-0.30624	-0.00012695	-0.16048	-6.6528E-05	-0.46673	-0.00019348	414.87778163536495	58.36	0.50945	59.109	58.879	59.389	0.74894					18	9	3	0	0	0	0.44858	1	22110	22110		27.088	14.232	1	3280500			16860	2608	12192	12286	16500	16500					-0.0018780819048060948
GETELKELHW	10	Unmodified	_GETELKELHW_					0	0	0		ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	MULTI-SECPEP	A375_MHC_IP_R2	2	621.1952514648438	2	621.311677	1240.6088	-1.0295	-0.00063964	0.35425	0.0002201	-0.67525	-0.00041954	621.3112537048244	58.281	0.30764	59.03	58.929	59.237	0.74894					8	5	2	0	0	0	0.65002	1	22102	22102		40.725	21.468	1	641400			16861	2608	12192	12286	16501	16501					-0.0018780819048060948
GETELREYF	9	Unmodified	_GETELREYF_					0	0	0		ENSG00000071626|ENST00000233078|DAZAP1;ENST00000586579.5_1_19:1407772-1428848:+|nuORF;ENST00000589484.5_1_19:1417247-1428848:+|nuORF;nc|ENSG00000071626|Q96EP5-2|DAZAP1	ENSG00000071626|ENST00000233078|DAZAP1	ENSG00000071626|ENST00000233078|DAZAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	572.66943359375	2	572.269478	1142.5244	-0.41378	-0.00023679	0.47764	0.00027334	0.063858	3.6544E-05	572.2697216439722	65.949	0.96412	65.949	65.514	66.478	0					47	18	4	0	0	0	0.036647	1	23845	23845		114.2	114.2	1	26078000			16862	1516	12193	12287	16502	16502					-0.04115759007231645
GETELREYF	9	Unmodified	_GETELREYF_					0	0	0		ENSG00000071626|ENST00000233078|DAZAP1;ENST00000586579.5_1_19:1407772-1428848:+|nuORF;ENST00000589484.5_1_19:1417247-1428848:+|nuORF;nc|ENSG00000071626|Q96EP5-2|DAZAP1	ENSG00000071626|ENST00000233078|DAZAP1	ENSG00000071626|ENST00000233078|DAZAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	572.6690673828125	2	572.269478	1142.5244	-0.3499	-0.00020023	-0.13256	-7.5858E-05	-0.48245	-0.00027609	572.2694006128309	65.205	1.0155	65.943	65.562	66.577	0.73811					54	19	4	0	0	0	0.050514	1	24667	24667		114.2	114.2	1	22753000			16863	1516	12193	12287	16503	16503					-0.04115759007231645
GETEYKFEW	9	Unmodified	_GETEYKFEW_					0	0	0		ENST00000461454.1_1_2:175243642-175260410:-|nuORF;nc|ENSG00000138433|Q86X95-2|CIR1;ENSG00000138433|ENST00000342016|CIR1	ENST00000461454.1_1_2:175243642-175260410:-|nuORF	ENST00000461454.1_1_2:175243642-175260410:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	595.1123046875	2	594.764029	1187.5135	-0.45601	-0.00027122	0.13022	7.7452E-05	-0.32579	-0.00019377	594.7640244804879	77.023	0.56219	77.023	76.673	77.235	0					18	10	2	0	0	0	0.59614	1	28137	28137		28.495	14.588	1	1947800			16864	4993	12194	12288	16504	16504					-0.07275161381517137
GETEYKFEW	9	Unmodified	_GETEYKFEW_					0	0	0		ENST00000461454.1_1_2:175243642-175260410:-|nuORF;nc|ENSG00000138433|Q86X95-2|CIR1;ENSG00000138433|ENST00000342016|CIR1	ENST00000461454.1_1_2:175243642-175260410:-|nuORF	ENST00000461454.1_1_2:175243642-175260410:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	595.1115112304688	2	594.764029	1187.5135	-0.55737	-0.0003315	0.50992	0.00030328	-0.047448	-2.8221E-05	594.7641634802006	76.383	0.81219	77.124	76.843	77.655	0.74052					17	15	2	0	0	0	0.59098	1	29029	29029		21.537	1.1224	1	1972400			16865	4993	12194	12288	16505	16505					-0.07275161381517137
GETGTEQDEE	10	Unmodified	_GETGTEQDEE_					0	0	0		nc|ENSG00000158528|Q9ULJ8|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A;PPP1R9A|p.E425K|1|0.44|ENSG00000158528|chr7:94911386-94911386|G/A|missense_variant	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	MULTI-MSMS	A375_MHC_IP_R2	2	547.6793212890625	2	547.709647	1093.40474	-0.78582	-0.0004304	-0.23054	-0.00012627	-1.0164	-0.00055667	547.7104699562886	76.893	0.55368	77.636	77.354	77.908	0.74293					24	10	3	0	0	0	0.70496	1	29281	29281		10.074	3.3508	1	1251200			16866	6310	12195	12289	16506	16506					-0.1382241714245538
GETPEDDDG	9	Unmodified	_GETPEDDDG_					0	0	0			REV__nc|ENSG00000103994|Q9H2Y7-2|ZNF106	REV__nc|ENSG00000103994|Q9H2Y7-2|ZNF106	MULTI-SECPEP	A375_MHC_IP_R1	1	468.1259765625	2	467.667251	933.31995	-0.42865	-0.00020046	-0.7485	-0.00035005	-1.1771	-0.00055051	467.6669475073264	39.531	0.55632	39.531	39.34	39.896	0					13	10	2	0	0	0	0.71541	1	13575	13575		16.942	9.0321	1	1400000	+		16867	17295	12196	12290	16507	16507					-0.1493774288841223
GETPEDDDG	9	Unmodified	_GETPEDDDG_					0	0	0			REV__nc|ENSG00000103994|Q9H2Y7-2|ZNF106	REV__nc|ENSG00000103994|Q9H2Y7-2|ZNF106	MULTI-MSMS	A375_MHC_IP_R2	2	468.0904846191406	2	467.667251	933.31995	-0.89347	-0.00041785	0.27656	0.00012934	-0.61691	-0.00028851	467.6674034196626	38.828	0.51258	39.603	39.351	39.863	0.77451					13	9	2	0	0	0	0.55818	2	14285	14285;14372		16.942	3.4344	1	1260100	+		16868	17295	12196	12290	16508;16509	16508					-0.1493774288841223
GETPEDDDG	9	Unmodified	_GETPEDDDG_					0	0	0			REV__nc|ENSG00000103994|Q9H2Y7-2|ZNF106	REV__nc|ENSG00000103994|Q9H2Y7-2|ZNF106	MULTI-SECPEP	A375_MHC_IP_R2	2	468.0904846191406	2	467.667251	933.31995	-0.89347	-0.00041785	0.27656	0.00012934	-0.61691	-0.00028851	467.6674034196626	38.828	0.51258	39.603	39.351	39.863	0.77451					13	9	2	0	0	0	0.71541	1	14285	14285		16.942	8.349	1	1260100	+		16869	17295	12196	12290	16510	16510					-0.1493774288841223
GETPLFKQF	9	Unmodified	_GETPLFKQF_					0	0	0		ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN;ENST00000373807.5_1_9:124074589-124093809:+|nuORF;CON__Q3SX14	ENSG00000148180|ENST00000432226|GSN	ENSG00000148180|ENST00000432226|GSN	MULTI-SECPEP	A375_MHC_IP_R1	1	534.181884765625	2	533.782025	1065.5495	-0.66392	-0.00035439	0.016357	8.7309E-06	-0.64756	-0.00034566	533.78200293613	73.977	0.45558	73.977	73.792	74.247	0					18	8	3	0	0	0	0.16676	1	26949	26949		41.84	0	1	2492000		+	16870	5721	12197	12291	16511	16511					0.019343405859899576
GETPLFKQF	9	Unmodified	_GETPLFKQF_					0	0	0		ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN;ENST00000373807.5_1_9:124074589-124093809:+|nuORF;CON__Q3SX14	ENSG00000148180|ENST00000432226|GSN	ENSG00000148180|ENST00000432226|GSN	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1817626953125	2	533.782025	1065.5495	-0.73682	-0.0003933	0.49135	0.00026227	-0.24547	-0.00013103	533.7821764547649	73.182	0.50867	73.918	73.633	74.141	0.73541					21	9	3	0	0	0	0.056023	1	27761	27761		85.642	0	1	2663000		+	16871	5721	12197	12291	16512	16512					0.019343405859899576
GETPQTDVRW	10	Unmodified	_GETPQTDVRW_					0	0	0		nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	MULTI-SECPEP	A375_MHC_IP_R1	1	595.1851196289062	2	594.785827	1187.5571	-0.37993	-0.00022598	0.066536	3.9575E-05	-0.31339	-0.0001864	594.785766661136	47.409	0.76428	47.409	47.055	47.819	0					37	14	4	0	0	0	0.022742	1	16635	16635		107.56	71.436	1	15895000			16872	1929	12198	12292	16513	16513					-0.029175518843885584
GETPQTDVRW	10	Unmodified	_GETPQTDVRW_					0	0	0		nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	MULTI-SECPEP	A375_MHC_IP_R2	2	595.1851806640625	2	594.785827	1187.5571	-0.40294	-0.00023966	-0.13027	-7.748E-05	-0.5332	-0.00031714	594.7858067924888	46.671	0.66123	47.433	47.054	47.716	0.76161					32	12	3	0	0	0	0.081287	1	17451	17451		80.676	51.594	1	12776000			16873	1929	12198	12292	16514	16514					-0.029175518843885584
GETSTVEKLY	10	Unmodified	_GETSTVEKLY_					0	0	0		ENST00000509705.3_1_19:39390655-39398344:+|nuORF;nc|ENSG00000104825|Q15653-2|NFKBIB;ENSG00000104825|ENST00000313582|NFKBIB;NFKBIB|p.Y205Lfs*59|1|0.03|ENSG00000104825|chr19:38905529-38905530|-/TGTTC|frameshift_variant	ENST00000509705.3_1_19:39390655-39398344:+|nuORF	ENST00000509705.3_1_19:39390655-39398344:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	563.665771484375	2	563.784961	1125.55537	-0.69928	-0.00039424	-1.0895	-0.00061426	-1.7888	-0.0010085	563.7838660912216	41.189	0.40617	41.189	41.013	41.419	0					12	7	2	0	0	0	0.69834	1	14200	14200		29.437	12.495	1	2395700			16874	2540	12199	12293	16515	16515					-0.002386056929935876
GETSTVEKLY	10	Unmodified	_GETSTVEKLY_					0	0	0		ENST00000509705.3_1_19:39390655-39398344:+|nuORF;nc|ENSG00000104825|Q15653-2|NFKBIB;ENSG00000104825|ENST00000313582|NFKBIB;NFKBIB|p.Y205Lfs*59|1|0.03|ENSG00000104825|chr19:38905529-38905530|-/TGTTC|frameshift_variant	ENST00000509705.3_1_19:39390655-39398344:+|nuORF	ENST00000509705.3_1_19:39390655-39398344:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	563.6653442382812	2	563.784961	1125.55537	-0.6057	-0.00034148	0.085255	4.8066E-05	-0.52044	-0.00029342	563.7847872334279	40.496	0.30366	41.271	41.082	41.386	0.77451					12	5	3	0	0	0	0.65827	1	15006	15006		39.213	32.111	1	2237200			16875	2540	12199	12293	16516	16516					-0.002386056929935876
GETSYIRVY	9	Unmodified	_GETSYIRVY_					0	0	0		ENST00000548326.1_1_12:120899824-120899986:-|nuORF;ENST00000548792.1_1_12:120899824-120901956:-|nuORF;ENST00000603963.1_1_12:120899824-120902572:-|nuORF;ENSG00000111786|ENST00000229390|SRSF9	ENST00000548326.1_1_12:120899824-120899986:-|nuORF	ENST00000548326.1_1_12:120899824-120899986:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	544.6998291015625	2	544.274564	1086.53457	-0.60164	-0.00032746	0.59367	0.00032312	-0.0079742	-4.3402E-06	544.274816810213	53.428	1.6197	53.428	52.744	54.364	0					62	31	3	0	0	0	0.027055	1	19107	19107		122.18	99.443	1	89423000			16876	3028	12200	12294	16517	16517					-0.005231512819818818
GETSYIRVY	9	Unmodified	_GETSYIRVY_					0	0	0		ENST00000548326.1_1_12:120899824-120899986:-|nuORF;ENST00000548792.1_1_12:120899824-120901956:-|nuORF;ENST00000603963.1_1_12:120899824-120902572:-|nuORF;ENSG00000111786|ENST00000229390|SRSF9	ENST00000548326.1_1_12:120899824-120899986:-|nuORF	ENST00000548326.1_1_12:120899824-120899986:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	545.0333251953125	2	544.274564	1086.53457	-1.286	-0.00069992	0.5327	0.00028994	-0.75327	-0.00040998	544.2747545633348	52.716	1.5747	53.467	52.778	54.353	0.75105					70	30	5	0	0	0	0.013536	1	19929	19929		122.18	89.874	1	80620000			16877	3028	12200	12294	16518	16518					-0.005231512819818818
GEVDDSREHSF	11	Unmodified	_GEVDDSREHSF_					0	0	0		ENSG00000164144|ENST00000353617|ARFIP1;nc|ENSG00000164144|P53367-2|ARFIP1;nc|ENSG00000164144|P53367-3|ARFIP1	ENSG00000164144|ENST00000353617|ARFIP1	ENSG00000164144|ENST00000353617|ARFIP1	MSMS	A375_MHC_IP_R1	1	639.673095703125	2	639.273281	1276.53201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.946	1	22.946	22.446	23.446	0								0	0	0	0.12549	1	6217	6217		30.431	14.282	1				16878	6790	12201	12295	16519	16519					-0.09519651477626212
GEVDDSREHSF	11	Unmodified	_GEVDDSREHSF_					0	0	0		ENSG00000164144|ENST00000353617|ARFIP1;nc|ENSG00000164144|P53367-2|ARFIP1;nc|ENSG00000164144|P53367-3|ARFIP1	ENSG00000164144|ENST00000353617|ARFIP1	ENSG00000164144|ENST00000353617|ARFIP1	MULTI-SECPEP	A375_MHC_IP_R1	1	426.91815185546875	3	426.517946	1276.53201	0.17683	7.542E-05	-0.04497	-1.9181E-05	0.13186	5.624E-05	426.5179514644568	22.848	0.50391	22.848	22.52	23.024	0					23	9	3	0	0	0	0.87263	1	6187	6187		29.281	17.106	1	3755400			16879	6790	12201	12295	16520	16520					-0.09519651477626212
GEVDDSREHSF	11	Unmodified	_GEVDDSREHSF_					0	0	0		ENSG00000164144|ENST00000353617|ARFIP1;nc|ENSG00000164144|P53367-2|ARFIP1;nc|ENSG00000164144|P53367-3|ARFIP1	ENSG00000164144|ENST00000353617|ARFIP1	ENSG00000164144|ENST00000353617|ARFIP1	MULTI-MSMS	A375_MHC_IP_R2	2	426.9177551269531	3	426.517946	1276.53201	-0.51009	-0.00021756	0.21472	9.1583E-05	-0.29537	-0.00012598	426.5180301940546	20.738	0.50759	21.348	21.008	21.516	0.61029					27	9	4	0	0	0	0.090348	1	6455	6455		52.193	31.782	1	3769700			16880	6790	12201	12295	16521	16521					-0.09519651477626212
GEVDFKEFI	9	Unmodified	_GEVDFKEFI_					0	0	0		ENSG00000221823|ENST00000234310|PPP3R1;ENSG00000188386|ENST00000374806|PPP3R2	ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	MULTI-SECPEP	A375_MHC_IP_R2	2	542.6710815429688	2	542.27149	1082.52843	-1.0093	-0.00054734	0.77718	0.00042144	-0.23216	-0.00012589	542.2718890994996	97.201	2.1314	97.957	97.216	99.348	0.75586					63	41	4	0	0	0	0.05217	1	36854	36854		89.401	45.542	1	10783000			16881	9664	12202	12296	16522	16522					-0.009536695135011541
GEVDFQEYV	9	Unmodified	_GEVDFQEYV_					0	0	0		ENSG00000160678|ENST00000292169|S100A1	ENSG00000160678|ENST00000292169|S100A1	ENSG00000160678|ENST00000292169|S100A1	MULTI-SECPEP	A375_MHC_IP_R2	2	542.6713256835938	2	543.242929	1084.47131	-0.6948	-0.00037744	-0.10493	-5.7004E-05	-0.79973	-0.00043445	543.2432028245058	95.634	0.50839	96.384	96.144	96.653	0.75045					14	9	2	0	0	0	0.58271	1	36345	36345		14.838	8.6325	1	683870			16882	6429	12203	12297	16523	16523					-0.06755136789888638
GEVDPKVAL	9	Unmodified	_GEVDPKVAL_					0	0	0		ENSG00000099795|ENST00000215565|NDUFB7;ENST00000593353.5_1_19:14676947-14682853:-|nuORF	ENSG00000099795|ENST00000215565|NDUFB7	ENSG00000099795|ENST00000215565|NDUFB7	MULTI-MSMS	A375_MHC_IP_R1	1	464.6616516113281	2	464.260925	926.507297	0.20968	9.7346E-05	-0.47862	-0.00022221	-0.26894	-0.00012486	464.2606785696889	48.75	1.4696	48.75	48.375	49.845	0					77	28	5	0	0	0	0.0099737	2	17127	17127;17412		96.367	13.837	1	216650000			16883	2082	12204	12298	16524;16525	16524					0.04110365177609765
GEVDPKVAL	9	Unmodified	_GEVDPKVAL_					0	0	0		ENSG00000099795|ENST00000215565|NDUFB7;ENST00000593353.5_1_19:14676947-14682853:-|nuORF	ENSG00000099795|ENST00000215565|NDUFB7	ENSG00000099795|ENST00000215565|NDUFB7	MULTI-MSMS	A375_MHC_IP_R2	2	464.6603088378906	2	464.260925	926.507297	-0.48707	-0.00022613	-0.24132	-0.00011204	-0.72839	-0.00033816	464.2607843098749	47.895	1.5204	48.656	48.275	49.796	0.76128					80	29	5	0	0	0	0.007896	3	17901	17901;18134;18168		129.77	40.818	1	240280000			16884	2082	12204	12298	16526;16527;16528	16526					0.04110365177609765
GEVDVRSAY	9	Unmodified	_GEVDVRSAY_					0	0	0		nc|ENSG00000257365|P49356-2|FNTB;ENSG00000257365|ENST00000246166|FNTB	nc|ENSG00000257365|P49356-2|FNTB	nc|ENSG00000257365|P49356-2|FNTB	MULTI-SECPEP	A375_MHC_IP_R1	1	498.642822265625	2	498.243264	994.471974	-0.57835	-0.00028816	0.24876	0.00012394	-0.32959	-0.00016421	498.24334563524627	32.437	0.505	32.437	32.179	32.684	0					22	9	3	0	0	0	0.025037	1	10462	10462		100.09	45.317	1	12387000			16885	9909	12205	12299	16529	16529					-0.025482973501880224
GEVEFRNY	8	Unmodified	_GEVEFRNY_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48755439-48768558:+|nuORF	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-SECPEP	A375_MHC_IP_R1	1	507.98040771484375	2	507.237981	1012.46141	-0.14616	-7.414E-05	-0.38692	-0.00019626	-0.53308	-0.0002704	507.2379543433897	45.613	0.91032	45.613	44.98	45.89	0					28	17	3	0	0	0	0.9187	1	16009	16009		19.257	7.6167	1	4447000			16886	2844	12206	12300	16530	16530					-0.04432280004630229
GEVEGHPVW	9	Unmodified	_GEVEGHPVW_					0	0	0		nc|ENSG00000102900|Q8N1F7-2|NUP93;ENSG00000102900|ENST00000308159|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	MULTI-MSMS	A375_MHC_IP_R1	1	505.6628112792969	2	505.240524	1008.46649	-0.14764	-7.4592E-05	-0.040469	-2.0446E-05	-0.1881	-9.5038E-05	505.24049827666613	45.611	1.1124	45.611	45.183	46.295	0					59	21	4	0	0	0	0.022213	2	16004	15896;16004		81.613	33.864	1	55088000			16887	2399	12207	12301	16531;16532	16532					-0.03739976142003343
GEVEMALEE	9	Unmodified	_GEVEMALEE_					0	0	0		ENSG00000189369|ENST00000340438|GSPT2	ENSG00000189369|ENST00000340438|GSPT2	ENSG00000189369|ENST00000340438|GSPT2	MSMS	A375_MHC_IP_R1	1	503.6478576660156	2	503.723515	1005.43248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.957	1	73.957	73.457	74.457	0								0	0	0	0.15283	1	26938	26938		16.942	3.4344	1				16888	8982	12208	12302	16533	16533					-0.07002185415922213
GEVESAKLI	9	Unmodified	_GEVESAKLI_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	A375_MHC_IP_R1	1	473.6662292480469	2	473.266207	944.517862	-0.40283	-0.00019065	-0.16789	-7.9455E-05	-0.57072	-0.0002701	473.26607085174777	44.041	0.81664	44.041	43.706	44.523	0					36	15	3	0	0	0	0.0099737	1	15326	15326		96.367	17.639	1	11536000			16889	1401	12209	12303	16534	16534					0.04338347832049294
GEVESAKLI	9	Unmodified	_GEVESAKLI_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	A375_MHC_IP_R2	2	473.6656494140625	2	473.266207	944.517862	-0.44245	-0.0002094	-0.35556	-0.00016827	-0.79801	-0.00037767	473.26589827030426	43.179	0.75946	43.951	43.623	44.383	0.7724					29	14	3	0	0	0	0.0092511	1	16081	16081		103.42	27.659	1	13854000			16890	1401	12209	12303	16535	16535					0.04338347832049294
GEVGRITKW	9	Unmodified	_GEVGRITKW_					0	0	0		ENSG00000178607|ENST00000433197|ERN1	ENSG00000178607|ENST00000433197|ERN1	ENSG00000178607|ENST00000433197|ERN1	MULTI-SECPEP	A375_MHC_IP_R1	1	523.6927490234375	2	523.293091	1044.57163	-0.40584	-0.00021237	0.020787	1.0878E-05	-0.38505	-0.0002015	523.2929464794402	35.096	0.40683	35.096	34.912	35.319	0					15	7	3	0	0	0	0.65623	1	11668	11668		18.373	4.467	1	2980000			16891	8169	12210	12304	16536	16536					0.05112565054423612
GEVLISRVY	9	Unmodified	_GEVLISRVY_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000472560.5_1_3:183894781-183898834:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;ENST00000484469.5_1_3:183894781-183895400:+|nuORF;ENST00000466598.5_1_3:183894781-183896942:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MULTI-MSMS	A375_MHC_IP_R1	1	518.6953735351562	2	518.295299	1034.57605	-0.43759	-0.0002268	-0.10357	-5.3678E-05	-0.54115	-0.00028048	518.2952433395	62.232	1.4348	62.232	61.839	63.274	0					86	27	5	0	0	0	0.3489	1	22654	22654		27.223	16.399	1	69552000			16892	6467	12211	12305	16537	16537					0.060140294773418645
GEVLISRVY	9	Unmodified	_GEVLISRVY_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000472560.5_1_3:183894781-183898834:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;ENST00000484469.5_1_3:183894781-183895400:+|nuORF;ENST00000466598.5_1_3:183894781-183896942:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MULTI-MSMS	A375_MHC_IP_R2	2	518.6950073242188	2	518.295299	1034.57605	-1.0266	-0.0005321	0.10258	5.3166E-05	-0.92405	-0.00047893	518.2953572174539	61.402	1.2637	62.147	61.869	63.132	0.74503					82	24	5	0	0	0	0.50892	1	23513	23513		19.362	9.9788	1	69109000			16893	6467	12211	12305	16538	16538					0.060140294773418645
GEVLKSSTF	9	Unmodified	_GEVLKSSTF_					0	0	0		ENSG00000144228|ENST00000280098|SPOPL	ENSG00000144228|ENST00000280098|SPOPL	ENSG00000144228|ENST00000280098|SPOPL	MULTI-MSMS	A375_MHC_IP_R1	1	484.6580810546875	2	484.258382	966.502212	-0.62955	-0.00030486	0.44038	0.00021326	-0.18917	-9.1605E-05	484.2585600552957	38.348	0.61362	38.348	37.913	38.526	0					18	11	3	0	0	0	0.012447	1	13014	13014		93.166	0	1	6309400			16894	5472	12212	12306	16539	16539					0.017620613150029385
GEVLKSSTF	9	Unmodified	_GEVLKSSTF_					0	0	0		ENSG00000144228|ENST00000280098|SPOPL	ENSG00000144228|ENST00000280098|SPOPL	ENSG00000144228|ENST00000280098|SPOPL	MULTI-MSMS	A375_MHC_IP_R2	2	484.657958984375	2	484.258382	966.502212	-0.93436	-0.00045247	0.41661	0.00020175	-0.51775	-0.00025072	484.25856183452896	37.526	0.40869	38.297	38.07	38.479	0.7709					16	7	3	0	0	0	0.020087	1	13726	13726		83.429	0	1	6561200			16895	5472	12212	12306	16540	16540					0.017620613150029385
GEVLRTNQF	9	Unmodified	_GEVLRTNQF_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;ERGIC3|p.S301F|1|0.45|ENSG00000125991|chr20:35556995-35556995|C/T|missense_variant	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-SECPEP	A375_MHC_IP_R1	1	532.6797485351562	2	532.28018	1062.54581	-0.43401	-0.00023102	-0.29079	-0.00015478	-0.7248	-0.0003858	532.2799359044294	42.742	1.0656	42.742	42.183	43.249	0					48	20	4	0	0	0	0.30133	1	14788	14788		51.415	22.334	1	23544000			16896	4017	12213	12307	16541	16541					0.01703670812139535
GEVLRTNQF	9	Unmodified	_GEVLRTNQF_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;ERGIC3|p.S301F|1|0.45|ENSG00000125991|chr20:35556995-35556995|C/T|missense_variant	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-SECPEP	A375_MHC_IP_R2	2	532.6795654296875	2	532.28018	1062.54581	-0.66442	-0.00035366	-0.22434	-0.00011941	-0.88877	-0.00047307	532.2799731461932	41.928	1.0201	42.702	42.149	43.169	0.77451					44	19	4	0	0	0	0.038931	1	15543	15543		100.09	69.454	1	27247000			16897	4017	12213	12307	16542	16542					0.01703670812139535
GEVNGIHGF	9	Unmodified	_GEVNGIHGF_					0	0	0		ENSG00000154447|ENST00000284637|SH3RF1;nc|ENSG00000154447|Q7Z6J0-3|SH3RF1	ENSG00000154447|ENST00000284637|SH3RF1	ENSG00000154447|ENST00000284637|SH3RF1	MULTI-SECPEP	A375_MHC_IP_R1	1	465.62725830078125	2	465.227417	928.44028	0.205	9.5372E-05	-0.75014	-0.00034899	-0.54514	-0.00025361	465.2271299322918	45.223	0.55538	45.223	44.928	45.484	0					14	10	2	0	0	0	0.20094	1	15840	15840		44.407	14.182	1	2027000			16898	6088	12214	12308	16543	16543					-0.026802453134791904
GEVNGIHGF	9	Unmodified	_GEVNGIHGF_					0	0	0		ENSG00000154447|ENST00000284637|SH3RF1;nc|ENSG00000154447|Q7Z6J0-3|SH3RF1	ENSG00000154447|ENST00000284637|SH3RF1	ENSG00000154447|ENST00000284637|SH3RF1	MULTI-SECPEP	A375_MHC_IP_R2	2	465.6278076171875	2	465.227417	928.44028	-0.60129	-0.00027974	0.55671	0.000259	-0.044581	-2.074E-05	465.2274972252362	44.348	0.91211	45.117	44.631	45.543	0.7691					37	17	4	0	0	0	0.20094	1	16545	16545		53.576	23.351	1	3128100			16899	6088	12214	12308	16544	16544					-0.026802453134791904
GEVNQRTSL	9	Unmodified	_GEVNQRTSL_					0	0	0			REV__ENSG00000185010|ENST00000360256|F8	REV__ENSG00000185010|ENST00000360256|F8	MULTI-SECPEP	A375_MHC_IP_R2	2	502.18975830078125	2	502.261988	1002.50942	-0.70578	-0.00035449	3.8579	0.0019377	3.1521	0.0015832	502.76525824792566	66.822	0.30528	67.558	67.445	67.75	0.73631					8	5	2	0	0	0	0.62767	1	25347	25347		3.9444	0	1	963790	+		16900	21858	12215	12309	16545	16545					0.008267939154393389
GEVPFNHEI	9	Unmodified	_GEVPFNHEI_					0	0	0		ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	A375_MHC_IP_R1	1	521.6532592773438	2	521.253631	1040.49271	-0.44137	-0.00023007	-0.037412	-1.9501E-05	-0.47878	-0.00024957	521.2535734120156	53.584	1.0129	53.584	53.301	54.314	0					50	19	4	0	0	0	0.082375	1	19054	19054		53.833	19.431	1	43747000			16901	7264	12216	12310	16546	16546					-0.025917069705201357
GEVPFNHEI	9	Unmodified	_GEVPFNHEI_					0	0	0		ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	A375_MHC_IP_R2	2	521.6533813476562	2	521.253631	1040.49271	-1.1332	-0.00059067	0.18245	9.5103E-05	-0.95073	-0.00049557	521.2536987258941	52.828	1.0178	53.579	53.284	54.301	0.75105					51	19	5	0	0	0	0.029064	1	19878	19878		75.761	25.828	1	42553000			16902	7264	12216	12310	16547	16547					-0.025917069705201357
GEVPIKVTW	9	Unmodified	_GEVPIKVTW_					0	0	0		ENSG00000166450|ENST00000389286|PRTG	ENSG00000166450|ENST00000389286|PRTG	ENSG00000166450|ENST00000389286|PRTG	MULTI-MSMS	A375_MHC_IP_R1	1	515.220947265625	2	514.792392	1027.57023	-0.68506	-0.00035266	0.26469	0.00013626	-0.42037	-0.0002164	514.7924653323057	80.617	0.81154	80.617	80.289	81.1	0					44	15	4	0	0	0	0.019126	2	29414	29386;29414		84.522	50.12	1	63773000			16903	7073	12217	12311	16548;16549	16549					0.057549309656678815
GEVPIKVTW	9	Unmodified	_GEVPIKVTW_					0	0	0		ENSG00000166450|ENST00000389286|PRTG	ENSG00000166450|ENST00000389286|PRTG	ENSG00000166450|ENST00000389286|PRTG	MULTI-MSMS	A375_MHC_IP_R2	2	514.6691284179688	2	514.792392	1027.57023	-0.70166	-0.00036121	-0.34007	-0.00017507	-1.0417	-0.00053627	514.7921423596694	79.786	0.86256	80.53	80.199	81.062	0.74474					46	16	4	0	0	0	0.037085	2	30276	30225;30276		69.338	38.702	1	52334000			16904	7073	12217	12311	16550;16551	16551					0.057549309656678815
GEVPPEEFS	9	Unmodified	_GEVPPEEFS_					0	0	0		ENST00000464180.1_1_17:39977184-39978657:+|nuORF;nc|ENSG00000141756|Q96AY3-2|FKBP10;ENSG00000141756|ENST00000321562|FKBP10	ENST00000464180.1_1_17:39977184-39978657:+|nuORF	ENST00000464180.1_1_17:39977184-39978657:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	989.8115234375	1	990.441468	989.434192	0.11059	0.00010953	0.074562	7.3849E-05	0.18515	0.00018338	990.4412237953054	68.714	0.45444	69.449	69.171	69.626	0.73511					14	8	2	0	0	0	0.76187	1	26102	26102		11.64	3.7301	1	2026700			16905	5272	12218	12312	16552	16552					-0.06094808335660673
GEVPSGAYGY	10	Unmodified	_GEVPSGAYGY_					0	0	0		ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENSG00000132471|ENST00000254806|WBP2	ENST00000416574.6_1_17:73843478-73851408:-|nuORF	ENST00000416574.6_1_17:73843478-73851408:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	500.62432861328125	2	500.224539	998.434526	-0.54805	-0.00027415	0.90926	0.00045483	0.36121	0.00018069	500.22463785094465	53.024	0.76006	53.024	52.592	53.352	0					38	14	4	0	0	0	0.47386	1	18864	18864		47.749	30.636	1	3800300			16906	4413	12219	12313	16553	16553					-0.06475388615808697
GEVPSGAYGY	10	Unmodified	_GEVPSGAYGY_					0	0	0		ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENSG00000132471|ENST00000254806|WBP2	ENST00000416574.6_1_17:73843478-73851408:-|nuORF	ENST00000416574.6_1_17:73843478-73851408:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	500.6241760253906	2	500.224539	998.434526	-1.0077	-0.0005041	0.40322	0.0002017	-0.60452	-0.00030239	500.2246396424762	52.414	0.80812	53.166	52.831	53.639	0.75225					33	15	3	0	0	0	0.47386	1	19761	19761		47.749	30.662	1	6884300			16907	4413	12219	12313	16554	16554					-0.06475388615808697
GEVPVLNVSY	10	Unmodified	_GEVPVLNVSY_					0	0	0		ENSG00000164163|ENST00000296577|ABCE1;ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000431492.2_1_1:192216230-192216602:-|nuORF	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-SECPEP	A375_MHC_IP_R2	2	539.1841430664062	2	538.784764	1075.55498	-0.79602	-0.00042888	-0.62213	-0.00033519	-1.4182	-0.00076408	538.7844282816482	79.747	0.51033	80.491	80.299	80.81	0.74474					13	7	3	0	0	0	0.81532	1	30291	30291		19.362	0	1	2883000			16908	6792	12220	12314	16555	16555					0.020220193778186513
GEVSARQEL	9	Unmodified	_GEVSARQEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	A375_MHC_IP_R1	1	495.156005859375	2	494.756538	987.498523	-0.52344	-0.00025898	-0.1192	-5.8973E-05	-0.64264	-0.00031795	494.7563593723149	25.657	0.50627	25.657	25.511	26.017	0					22	9	3	0	0	0	0.0094639	1	7543	7543		106.94	41.705	1	15725000			16909	7207	12221	12315	16556	16556					0.004273915411431517
GEVSARQEL	9	Unmodified	_GEVSARQEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	A375_MHC_IP_R2	2	495.1559143066406	2	494.756538	987.498523	-0.91004	-0.00045025	-0.19164	-9.4816E-05	-1.1017	-0.00054506	494.7564506035421	25.101	0.5101	25.744	25.568	26.078	0.64368					22	9	3	0	0	0	0.027818	1	8328	8328		76.825	29.076	1	14341000			16910	7207	12221	12315	16557	16557					0.004273915411431517
GEVSGLTKDF	10	Unmodified	_GEVSGLTKDF_					0	0	0		ENSG00000145996|ENST00000274695|CDKAL1;nc|ENSG00000145996|Q5VV42-2|CDKAL1	ENSG00000145996|ENST00000274695|CDKAL1	ENSG00000145996|ENST00000274695|CDKAL1	MULTI-MSMS	A375_MHC_IP_R1	1	527.1663208007812	2	526.766571	1051.51859	-0.35139	-0.0001851	-0.2048	-0.00010788	-0.55619	-0.00029298	526.7664504284822	54.391	0.96275	54.391	53.758	54.72	0					37	14	4	0	0	0	0.0094485	2	19360	19348;19360		108.26	64.49	1	27503000			16911	5598	12222	12316	16558;16559	16559					-0.005108575189069597
GEVSGLTKDF	10	Unmodified	_GEVSGLTKDF_					0	0	0		ENSG00000145996|ENST00000274695|CDKAL1;nc|ENSG00000145996|Q5VV42-2|CDKAL1	ENSG00000145996|ENST00000274695|CDKAL1	ENSG00000145996|ENST00000274695|CDKAL1	MULTI-MSMS	A375_MHC_IP_R2	2	527.1666870117188	2	526.766571	1051.51859	-0.97449	-0.00051333	-0.035012	-1.8443E-05	-1.0095	-0.00053177	526.7665042957119	53.571	0.81989	54.322	53.944	54.764	0.75105					36	15	3	0	0	0	0.0089867	1	20171	20171		107.56	63.791	1	23222000			16912	5598	12222	12316	16560	16560					-0.005108575189069597
GEVTIKGYAW	10	Unmodified	_GEVTIKGYAW_					0	0	0		ENSG00000139531|ENST00000266971|SUOX	ENSG00000139531|ENST00000266971|SUOX	ENSG00000139531|ENST00000266971|SUOX	MULTI-SECPEP	A375_MHC_IP_R1	1	562.6686401367188	2	562.292756	1122.57096	-0.27907	-0.00015692	-2.3763	-0.0013362	-2.6554	-0.0014931	562.7918095569245	70.263	0.45999	70.263	70.034	70.494	0					15	8	2	0	0	0	0.70461	1	25550	25550		41.956	33.362	1	1124300			16913	5084	12223	12317	16561	16561					0.014577256147049411
GEVTIKGYAW	10	Unmodified	_GEVTIKGYAW_					0	0	0		ENSG00000139531|ENST00000266971|SUOX	ENSG00000139531|ENST00000266971|SUOX	ENSG00000139531|ENST00000266971|SUOX	MULTI-SECPEP	A375_MHC_IP_R2	2	562.6685180664062	2	562.292756	1122.57096	-0.4855	-0.000273	-0.85583	-0.00048123	-1.3413	-0.00075422	562.2932033589251	69.653	0.40833	70.387	70.183	70.591	0.73421					12	7	2	0	0	0	0.74263	1	26388	26388		38.176	21.063	1	843040			16914	5084	12223	12317	16562	16562					0.014577256147049411
GEVVALKKI	9	Unmodified	_GEVVALKKI_					0	0	0		ENSG00000123374|ENST00000266970|CDK2;nc|ENSG00000123374|P24941-2|CDK2	ENSG00000123374|ENST00000266970|CDK2	ENSG00000123374|ENST00000266970|CDK2	MULTI-SECPEP	A375_MHC_IP_R1	1	479.2104797363281	2	478.810585	955.606617	-0.32517	-0.00015569	0.28102	0.00013456	-0.044147	-2.1138E-05	478.8106851168845	35.294	0.55944	35.294	34.963	35.522	0					22	10	3	0	0	0	0.11849	1	11715	11715		61.602	0	1	10858000			16915	3843	12224	12318	16563	16563					0.12703807862362737
GEVVALKKI	9	Unmodified	_GEVVALKKI_					0	0	0		ENSG00000123374|ENST00000266970|CDK2;nc|ENSG00000123374|P24941-2|CDK2	ENSG00000123374|ENST00000266970|CDK2	ENSG00000123374|ENST00000266970|CDK2	MULTI-SECPEP	A375_MHC_IP_R2	2	479.21014404296875	2	478.810585	955.606617	-0.83367	-0.00039917	0.4032	0.00019306	-0.43047	-0.00020611	478.8107152672609	34.382	0.40844	35.134	34.904	35.312	0.75225					14	7	3	0	0	0	0.16595	1	12385	12385		61.602	0	1	6227100			16916	3843	12224	12318	16564	16564					0.12703807862362737
GEVVAVKKL	9	Unmodified	_GEVVAVKKL_					0	0	0		ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	MULTI-MSMS	A375_MHC_IP_R1	1	472.2024841308594	2	471.80276	941.590967	-0.56416	-0.00026617	0.05842	2.7562E-05	-0.50574	-0.00023861	471.80276352269647	27.676	0.45343	27.676	27.533	27.987	0					18	8	3	0	0	0	0.035419	1	8437	8437		70.332	20.778	1	5021200			16917	2064	12225	12319	16565	16565					0.11783521345330428
GEVVAVKKL	9	Unmodified	_GEVVAVKKL_					0	0	0		ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	MULTI-SECPEP	A375_MHC_IP_R2	2	472.202392578125	2	471.80276	941.590967	-0.71468	-0.00033719	0.19446	9.1748E-05	-0.52022	-0.00024544	471.8027650521066	26.982	0.41024	27.642	27.466	27.876	0.65992					18	7	3	0	0	0	0.16595	1	9190	9190		53.404	11.448	1	5545600			16918	2064	12225	12319	16566	16566					0.11783521345330428
GEVVAVLSTW	10	Unmodified	_GEVVAVLSTW_					0	0	0		ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3	ENSG00000165323|ENST00000525166|FAT3	ENSG00000165323|ENST00000525166|FAT3	MULTI-SECPEP	A375_MHC_IP_R1	1	530.1786499023438	2	530.787307	1059.56006	-0.75519	-0.00040084	-0.22827	-0.00012116	-0.98346	-0.00052201	530.7874513769594	80.611	0.81152	80.611	80.187	80.999	0					22	11	3	0	0	0	0.8125	1	29480	29480		18.146	5.1039	1	4550800			16919	6942	12226	12320	16567	16567					0.03266323240427482
GEVVAVLSTW	10	Unmodified	_GEVVAVLSTW_					0	0	0		ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3	ENSG00000165323|ENST00000525166|FAT3	ENSG00000165323|ENST00000525166|FAT3	MULTI-SECPEP	A375_MHC_IP_R2	2	531.1864013671875	2	530.787307	1059.56006	-0.56556	-0.00030019	-0.72812	-0.00038648	-1.2937	-0.00068667	530.786931522723	79.793	0.56055	80.538	80.249	80.81	0.74473					17	9	2	0	0	0	0.83355	1	30287	30287		22.736	8.8302	1	4293900			16920	6942	12226	12320	16568	16568					0.03266323240427482
GEVYAIETF	9	Unmodified	_GEVYAIETF_					0	0	0		nc|ENSG00000111142|P50579-3|METAP2;ENSG00000111142|ENST00000323666|METAP2;nc|ENSG00000111142|P50579-2|METAP2	nc|ENSG00000111142|P50579-3|METAP2	nc|ENSG00000111142|P50579-3|METAP2	MULTI-MSMS	A375_MHC_IP_R2	2	1030.566162109375	1	1028.4935	1027.48623	0.14999	0.00015426	-0.34668	-0.00035656	-0.1967	-0.0002023	1028.4928335818508	98.877	0.70963	99.637	99.251	99.961	0.75977					36	13	3	0	0	0	0.51106	1	37461	37461		19.257	2.3147	1	14767000			16921	2966	12227	12321	16569	16569					-0.02641644921891384
GEVYAIETF	9	Unmodified	_GEVYAIETF_					0	0	0		nc|ENSG00000111142|P50579-3|METAP2;ENSG00000111142|ENST00000323666|METAP2;nc|ENSG00000111142|P50579-2|METAP2	nc|ENSG00000111142|P50579-3|METAP2	nc|ENSG00000111142|P50579-3|METAP2	MULTI-MATCH	A375_MHC_IP_R1	1		1	1028.4935	1027.48623	0.1602	0.00016476	-0.56341	-0.00057946	-0.40321	-0.0004147	1028.4927184073688	99.577	0.90903	99.577	99.015	99.925	0	-0.030082	-7.7623E-05	NaN	19.257	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13324000			16922	2966	12227	12321							-0.02641644921891384
GEVYGPDPSH	10	Unmodified	_GEVYGPDPSH_					0	0	0		ENST00000377365.3_1_5:169310911-169310950:-|nuORF	ENST00000377365.3_1_5:169310911-169310950:-|nuORF	ENST00000377365.3_1_5:169310911-169310950:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	529.9624633789062	2	529.232896	1056.45124	-0.32154	-0.00017017	-1.3251	-0.00070131	-1.6467	-0.00087148	529.2321760948664	45.632	0.75889	45.632	45.284	46.043	0					30	14	3	0	0	0	0.74754	1	15951	15951		17.113	0	1	2435700			16923	11296	12228	12322	16570	16570					-0.07472887729841204
GEWASGGVRSF	11	Unmodified	_GEWASGGVRSF_					0	0	0		nc|ENSG00000126432|P30044-4|PRDX5;nc|ENSG00000126432|P30044-3|PRDX5;ENSG00000126432|ENST00000265462|PRDX5	nc|ENSG00000126432|P30044-4|PRDX5	nc|ENSG00000126432|P30044-4|PRDX5	MULTI-SECPEP	A375_MHC_IP_R1	1	577.1752319335938	2	576.775262	1151.53597	-0.11045	-6.3706E-05	0.29737	0.00017151	0.18691	0.00010781	576.7753987209261	54.645	0.86266	54.645	54.263	55.126	0					49	16	4	0	0	0	0.00878	1	19466	19466		125.66	74.241	1	67788000			16924	4041	12229	12323	16571	16571					-0.03373517193244879
GEWASGGVRSF	11	Unmodified	_GEWASGGVRSF_					0	0	0		nc|ENSG00000126432|P30044-4|PRDX5;nc|ENSG00000126432|P30044-3|PRDX5;ENSG00000126432|ENST00000265462|PRDX5	nc|ENSG00000126432|P30044-4|PRDX5	nc|ENSG00000126432|P30044-4|PRDX5	MULTI-SECPEP	A375_MHC_IP_R2	2	577.175048828125	2	576.775262	1151.53597	-0.5634	-0.00032495	-0.1469	-8.4731E-05	-0.7103	-0.00040969	576.7751345596652	53.884	0.81696	54.635	54.301	55.118	0.75105					49	15	4	0	0	0	0.038182	1	20292	20292		99.864	67.559	1	53904000			16925	4041	12229	12323	16572	16572					-0.03373517193244879
GEWDLGKEM	9	Unmodified	_GEWDLGKEM_					0	0	0			REV__nc|ENSG00000198298|Q8NCK3-2|ZNF485	REV__nc|ENSG00000198298|Q8NCK3-2|ZNF485	MULTI-SECPEP	A375_MHC_IP_R1	1	533.2028198242188	2	532.739499	1063.46445	-0.58003	-0.000309	0.49557	0.00026401	-0.084462	-4.4996E-05	532.7399849159758	63.402	0.45958	63.402	63.069	63.529	0					13	8	2	0	0	0	0.74412	1	22840	22840		14.838	12.779	1	1725400	+		16926	22360	12230	12324	16573	16573					-0.06474772942124218
GEWDLGKEM	9	Unmodified	_GEWDLGKEM_					0	0	0			REV__nc|ENSG00000198298|Q8NCK3-2|ZNF485	REV__nc|ENSG00000198298|Q8NCK3-2|ZNF485	MSMS	A375_MHC_IP_R2	2	532.6870727539062	2	532.739499	1063.46445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.498	1	63.241	62.741	63.741	0.74263								0	0	0	0.15411	1	23689	23689		14.838	0.93222	1		+		16927	22360	12230	12324	16574	16574					-0.06474772942124218
GEWERYIQW	9	Unmodified	_GEWERYIQW_					0	0	0		ENST00000465029.5_1_2:111419157-111435602:-|nuORF;nc|ENSG00000169679|O43683-2|BUB1;ENSG00000169679|ENST00000302759|BUB1	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	MSMS	A375_MHC_IP_R1	1	633.6763916015625	2	633.798737	1265.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.46	1	102.46	101.96	102.96	0								0	0	0	0.15273	1	37656	37656		17.113	3.2068	1				16928	7427	12231	12325	16575	16575					-0.03924657642096463
GEWKTAEKW	9	Unmodified	_GEWKTAEKW_					0	0	0		ENSG00000130177|ENST00000356221|CDC16;nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-2|CDC16	ENSG00000130177|ENST00000356221|CDC16	ENSG00000130177|ENST00000356221|CDC16	MULTI-MSMS	A375_MHC_IP_R1	1	567.6954956054688	2	567.782556	1133.55056	-0.37068	-0.00021047	-0.4421	-0.00025101	-0.81278	-0.00046148	567.7824467410226	34.717	0.30319	34.717	34.507	34.81	0					12	5	3	0	0	0	0.021859	1	11468	11468		81.915	49.13	1	2979400			16929	4228	12232	12326	16576	16576					-0.010874450451183293
GEWKTAEKW	9	Unmodified	_GEWKTAEKW_					0	0	0		ENSG00000130177|ENST00000356221|CDC16;nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-2|CDC16	ENSG00000130177|ENST00000356221|CDC16	ENSG00000130177|ENST00000356221|CDC16	MULTI-SECPEP	A375_MHC_IP_R1	1	378.93280029296875	3	378.857463	1133.55056	0.373	0.00014131	0.37196	0.00014092	0.74497	0.00028224	378.8573973401836	34.908	0.7616	34.908	34.456	35.218	0					17	13	2	0	0	0	0.56537	1	11458	11458		12.175	7.2777	1	1965600			16930	4228	12232	12326	16577	16577					-0.010874450451183293
GEWKTAEKW	9	Unmodified	_GEWKTAEKW_					0	0	0		ENSG00000130177|ENST00000356221|CDC16;nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-2|CDC16	ENSG00000130177|ENST00000356221|CDC16	ENSG00000130177|ENST00000356221|CDC16	MULTI-MSMS	A375_MHC_IP_R2	2	567.6954345703125	2	567.782556	1133.55056	-0.82652	-0.00046928	-0.23689	-0.0001345	-1.0634	-0.00060378	567.7822349655612	33.907	0.65843	34.66	34.45	35.108	0.75225					15	12	2	0	0	0	0.23226	1	12203	12203		35.612	15.159	1	2633600			16931	4228	12232	12326	16578	16578					-0.010874450451183293
GEWKTAEKW	9	Unmodified	_GEWKTAEKW_					0	0	0		ENSG00000130177|ENST00000356221|CDC16;nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-2|CDC16	ENSG00000130177|ENST00000356221|CDC16	ENSG00000130177|ENST00000356221|CDC16	MULTI-SECPEP	A375_MHC_IP_R2	2	378.93280029296875	3	378.857463	1133.55056	-0.32123	-0.0001217	0.20358	7.7129E-05	-0.11764	-4.4571E-05	378.85739074168816	34.15	0.96519	34.902	34.399	35.364	0.75225					31	18	3	0	0	0	0.61452	1	12195	12195		19.626	12.996	1	4179600			16932	4228	12232	12326	16579	16579					-0.010874450451183293
GEWNGTLEF	9	Unmodified	_GEWNGTLEF_					0	0	0		ENSG00000144645|ENST00000396556|OSBPL10;nc|ENSG00000144645|Q9BXB5-2|OSBPL10	ENSG00000144645|ENST00000396556|OSBPL10	ENSG00000144645|ENST00000396556|OSBPL10	MULTI-MSMS	A375_MHC_IP_R1	1	527.1378784179688	2	526.737814	1051.46108	-0.22974	-0.00012101	0.082624	4.3521E-05	-0.14711	-7.7489E-05	526.7377986286017	108.61	0.60815	108.61	108.31	108.92	0					28	11	3	0	0	0	0.015701	1	39824	39824		88.954	46.859	1	6458400			16933	5500	12233	12327	16580	16580					-0.06259699724455459
GEWNGTLEF	9	Unmodified	_GEWNGTLEF_					0	0	0		ENSG00000144645|ENST00000396556|OSBPL10;nc|ENSG00000144645|Q9BXB5-2|OSBPL10	ENSG00000144645|ENST00000396556|OSBPL10	ENSG00000144645|ENST00000396556|OSBPL10	MULTI-SECPEP	A375_MHC_IP_R1	1	1052.652587890625	1	1052.46835	1051.46108	0.40532	0.00042659	0.14436	0.00015194	0.54969	0.00057853	1052.4682873045258	108.64	0.86042	108.64	108.26	109.12	0					46	16	4	0	0	0	0.010931	1	39827	39827		136.39	65.259	1	30638000			16934	5500	12233	12327	16581	16581					-0.06259699724455459
GEWNGTLEF	9	Unmodified	_GEWNGTLEF_					0	0	0		ENSG00000144645|ENST00000396556|OSBPL10;nc|ENSG00000144645|Q9BXB5-2|OSBPL10	ENSG00000144645|ENST00000396556|OSBPL10	ENSG00000144645|ENST00000396556|OSBPL10	MULTI-SECPEP	A375_MHC_IP_R2	2	1052.6514892578125	1	1052.46835	1051.46108	0.03881	4.0846E-05	0.063113	6.6424E-05	0.10192	0.00010727	1052.4682282099368	107.88	0.86994	108.63	108.25	109.12	0.75436					44	16	4	0	0	0	0.011143	1	40786	40786		125.04	79.017	1	26539000			16935	5500	12233	12327	16582	16582					-0.06259699724455459
GEWPDQPRI	9	Unmodified	_GEWPDQPRI_					0	0	0		ENSG00000187257|ENST00000334955|RSBN1L;RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant;nc|ENSG00000187257|Q6PCB5-2|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	MULTI-SECPEP	A375_MHC_IP_R1	1	549.6721801757812	2	549.272355	1096.53016	-0.54011	-0.00029667	0.59807	0.00032851	0.057966	3.1839E-05	549.2725319720818	60.347	0.71352	60.347	59.955	60.669	0					45	13	4	0	0	0	0.30925	1	21687	21687		49.554	16.769	1	8833300			16936	8817	12234	12328	16583	16583					-0.01424615704900134
GEWPDQPRI	9	Unmodified	_GEWPDQPRI_					0	0	0		ENSG00000187257|ENST00000334955|RSBN1L;RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant;nc|ENSG00000187257|Q6PCB5-2|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	MULTI-SECPEP	A375_MHC_IP_R2	2	549.6720581054688	2	549.272355	1096.53016	-1.1633	-0.00063897	0.90812	0.0004988	-0.25518	-0.00014016	549.2728578655858	59.655	1.215	60.403	59.896	61.111	0.74714					57	23	4	0	0	0	0.14572	1	22515	22515		62.573	29.787	1	7710700			16937	8817	12234	12328	16584	16584					-0.01424615704900134
GEWPQILVF	9	Unmodified	_GEWPQILVF_					0	0	0		ENSG00000087253|ENST00000262134|LPCAT2;LPCAT2|p.L491*|1|0.06|ENSG00000087253|chr16:55582920-55582921|-/TAAAAGTTTTGCC|frameshift_variant	ENSG00000087253|ENST00000262134|LPCAT2	ENSG00000087253|ENST00000262134|LPCAT2	MULTI-MSMS	A375_MHC_IP_R2	2	545.192138671875	2	544.792392	1087.57023	-0.73307	-0.00039937	0.65768	0.0003583	-0.075387	-4.1071E-05	544.7928289630219	133.36	0.35339	133.53	133.4	133.75	0.16487					12	6	3	0	0	0	0.0099105	1	52471	52471		118.89	47.761	1	9902000			16938	1865	12235	12329	16585	16585					0.0299493096565584
GEWRTVCHD	9	Unmodified	_GEWRTVCHD_					0	0	0		CD163L1|p.G498R|1|0.48|ENSG00000177675|chr12:7398501-7398501|C/T|missense_variant	CD163L1|p.G498R|1|0.48|ENSG00000177675|chr12:7398501-7398501|C/T|missense_variant	CD163L1|p.G498R|1|0.48|ENSG00000177675|chr12:7398501-7398501|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	368.2851257324219	3	368.162669	1101.46618	0.28352	0.00010438	-0.27585	-0.00010156	0.007674	2.8253E-06	368.16246655847783	69.747	0.50925	70.482	70.233	70.743	0.73421					12	9	2	0	0	0	0.80718	1	26496	26496		2.086	1.4592	1	461960			16939	329	12236	12330	16586	16586					-0.08049719133509825
GEWSGADHCH	10	Unmodified	_GEWSGADHCH_					0	0	0			REV__ENST00000550867.5_1_12:49491457-49494363:-|nuORF	REV__ENST00000550867.5_1_12:49491457-49494363:-|nuORF	MSMS	A375_MHC_IP_R2	2	549.6720581054688	2	549.706522	1097.39849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.494	1	60.241	59.741	60.741	0.74714								0	0	0	0.15435	1	22515	22515		6.7232	1.9672	1		+		16940	26039	12237	12331	16587	16587					-0.14631169064318783
GEWTPTLQHY	10	Unmodified	_GEWTPTLQHY_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	A375_MHC_IP_R1	1	616.690185546875	2	616.290745	1230.56694	-0.41763	-0.00025738	0.058526	3.6069E-05	-0.3591	-0.00022131	616.2907342245397	64.956	0.60788	64.956	64.649	65.257	0					36	11	4	0	0	0	0.014421	1	23455	23455		89.401	56.615	1	15375000			16941	4546	12238	12332	16588	16588					-0.03912363878976066
GEWTPTLQHY	10	Unmodified	_GEWTPTLQHY_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MSMS	A375_MHC_IP_R2	2	616.6906127929688	2	616.290745	1230.56694	-0.55643	-0.00034292	-0.095156	-5.8644E-05	-0.65158	-0.00040157	616.2906216333415	64.233	0.71259	64.973	64.648	65.361	0.74023					37	13	4	0	0	0	0.0044674	2	24311	24311;24393		96.367	63.581	1	14760000			16942	4546	12238	12332	16589;16590	16589					-0.03912363878976066
GEWTWGPAKR	10	Unmodified	_GEWTWGPAKR_					0	0	0			REV__ENST00000485778.1_1_1:161633004-161641486:+|nuORF	REV__ENST00000485778.1_1_1:161633004-161641486:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	594.7009887695312	2	594.301447	1186.58834	-0.46488	-0.00027628	-0.083432	-4.9584E-05	-0.54831	-0.00032586	594.3015812967282	90.222	0.7113	90.953	90.699	91.41	0.7318					31	13	3	0	0	0	0.74754	1	34300	34300		29.082	0	1	6531500	+		16943	25312	12239	12333	16591	16591					0.0025106594034696172
GEWWDESAR	9	Unmodified	_GEWWDESAR_					0	0	0			REV__nc|ENSG00000196935|Q7Z6B7-2|SRGAP1;REV__nc|ENSG00000196220|O43295-2|SRGAP3	REV__nc|ENSG00000196220|O43295-2|SRGAP3	MULTI-MSMS	A375_MHC_IP_R2	2	568.6720581054688	2	568.243795	1134.47304	-0.45098	-0.00025626	0.1458	8.2852E-05	-0.30517	-0.00017341	568.2436075199129	50.817	0.30254	51.571	51.412	51.715	0.75406					9	5	2	0	0	0	0.51106	1	19154	19154		19.257	2.1441	1	1073100	+		16944	22240;22172	12240	12334	16592	16592					-0.08882082981290296
GEWWDESAR	9	Unmodified	_GEWWDESAR_					0	0	0			REV__nc|ENSG00000196935|Q7Z6B7-2|SRGAP1;REV__nc|ENSG00000196220|O43295-2|SRGAP3	REV__nc|ENSG00000196220|O43295-2|SRGAP3	MULTI-MATCH	A375_MHC_IP_R1	1		2	568.243795	1134.47304	-0.20895	-0.00011874	0.20861	0.00011854	-0.00034448	-1.9575E-07	568.2437347470642	51.45	0.30416	51.45	51.27	51.575	0	-0.060376	1.7175E-05	NaN	19.257	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1134600	+		16945	22240;22172	12240	12334							-0.08882082981290296
GEWWDESAR	9	Unmodified	_GEWWDESAR_					0	0	0			REV__nc|ENSG00000196935|Q7Z6B7-2|SRGAP1;REV__nc|ENSG00000196220|O43295-2|SRGAP3	REV__nc|ENSG00000196220|O43295-2|SRGAP3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	568.243795	1134.47304	-0.45098	-0.00025626	0.1458	8.2852E-05	-0.30517	-0.00017341	568.2436075199129	50.817	0.30254	51.571	51.412	51.715	0.75406	0.060376	-5.4204E-05	NaN	19.257	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1073100	+		16946	22240;22172	12240	12334							-0.08882082981290296
GEYAGSDKLY	10	Unmodified	_GEYAGSDKLY_					0	0	0		nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENSG00000119522|ENST00000394215|DENND1A;nc|ENSG00000119522|Q8TEH3-4|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;ENST00000479305.5_1_9:126200042-126224279:-|nuORF;ENST00000497135.5_1_9:126173862-126345492:-|nuORF;ENST00000462245.1_1_9:126202450-126219642:-|nuORF	nc|ENSG00000119522|Q8TEH3-5|DENND1A	nc|ENSG00000119522|Q8TEH3-5|DENND1A	MULTI-SECPEP	A375_MHC_IP_R1	1	552.2173461914062	2	551.756204	1101.49785	-0.77381	-0.00042696	-0.093552	-5.1618E-05	-0.86737	-0.00047857	551.7563003150273	36.82	0.40337	36.82	36.592	36.996	0					13	7	2	0	0	0	0.31583	1	12385	12385		53.317	27.049	1	4021100			16947	3600	12241	12335	16593	16593					-0.0488344789855546
GEYAGSDKLY	10	Unmodified	_GEYAGSDKLY_					0	0	0		nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENSG00000119522|ENST00000394215|DENND1A;nc|ENSG00000119522|Q8TEH3-4|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;ENST00000479305.5_1_9:126200042-126224279:-|nuORF;ENST00000497135.5_1_9:126173862-126345492:-|nuORF;ENST00000462245.1_1_9:126202450-126219642:-|nuORF	nc|ENSG00000119522|Q8TEH3-5|DENND1A	nc|ENSG00000119522|Q8TEH3-5|DENND1A	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1556396484375	2	551.756204	1101.49785	-0.90197	-0.00049767	-0.36378	-0.00020072	-1.2658	-0.00069839	551.7561992251382	36.053	0.46027	36.817	36.638	37.099	0.76338					14	8	2	0	0	0	0.5901	1	13122	13122		44.392	20.371	1	4539700			16948	3600	12241	12335	16594	16594					-0.0488344789855546
GEYDRLEY	8	Unmodified	_GEYDRLEY_					0	0	0			REV__ENST00000401466.5_1_2:120439392-120439584:+|nuORF	REV__ENST00000401466.5_1_2:120439392-120439584:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	523.1898803710938	2	522.735271	1043.45599	-0.41366	-0.00021623	-0.10531	-5.505E-05	-0.51897	-0.00027128	522.7352832249499	70.844	0.81915	70.844	70.494	71.313	0					20	15	2	0	0	0	0.72761	2	25749	25749;25783		26.341	8.2063	1	1966300	+		16949	24408	12242	12336	16595;16596	16595					-0.064000035871004
GEYDRLEY	8	Unmodified	_GEYDRLEY_					0	0	0			REV__ENST00000401466.5_1_2:120439392-120439584:+|nuORF	REV__ENST00000401466.5_1_2:120439392-120439584:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1898803710938	2	522.735271	1043.45599	-0.41366	-0.00021623	-0.10531	-5.505E-05	-0.51897	-0.00027128	522.7352832249499	70.844	0.81915	70.844	70.494	71.313	0					20	15	2	0	0	0	0.90224	1	25749	25749		26.341	9.399	1	1966300	+		16950	24408	12242	12336	16597	16597					-0.064000035871004
GEYDYDDGY	9	Unmodified	_GEYDYDDGY_					0	0	0		ENST00000522079.5_1_8:136569738-136660819:+|nuORF;ENSG00000131773|ENST00000355849|KHDRBS3	ENST00000522079.5_1_8:136569738-136660819:+|nuORF	ENST00000522079.5_1_8:136569738-136660819:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	366.4445495605469	3	366.129576	1095.3669	0.011023	4.036E-06	0.86861	0.00031802	0.87964	0.00032206	366.1304701442839	39.419	0.45705	40.194	39.914	40.371	0.77451					12	8	2	0	0	0	0.75523	1	14490	14490		1.0715	0	1	2395800			16951	4349	12243	12337	16598	16598					-0.17696883337271174
GEYGANRIY	9	Unmodified	_GEYGANRIY_					0	0	0		ENST00000564746.1_1_16:19078986-19083491:+|nuORF;nc|ENSG00000167186|Q99807-2|COQ7;ENSG00000167186|ENST00000321998|COQ7	ENST00000564746.1_1_16:19078986-19083491:+|nuORF	ENST00000564746.1_1_16:19078986-19083491:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	522.2159423828125	2	521.751256	1041.48796	-0.88342	-0.00046092	-0.25363	-0.00013233	-1.137	-0.00059325	521.7509446752409	33.262	0.30507	34.014	33.891	34.196	0.75225					7	5	2	0	0	0	0.63327	1	11940	11940		13.042	2.2185	1	980070			16952	7165	12244	12338	16599	16599					-0.031125911132676265
GEYGRHSLY	9	Unmodified	_GEYGRHSLY_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-MSMS	A375_MHC_IP_R1	1	541.6561889648438	2	541.256705	1080.49886	-0.67219	-0.00036383	-0.65312	-0.0003535	-1.3253	-0.00071733	541.2564589259562	24.775	0.45567	24.775	24.597	25.053	0					16	8	3	0	0	0	0.12748	1	7139	7139		45.74	13.434	1	12550000			16953	2123	12245	12339	16600	16600					-0.03817188739003541
GEYGRHSLY	9	Unmodified	_GEYGRHSLY_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-SECPEP	A375_MHC_IP_R1	1	361.5736083984375	3	361.173562	1080.49886	0.10496	3.7907E-05	-0.47068	-0.00017	-0.36573	-0.00013209	361.173362713351	24.78	0.45686	24.78	24.647	25.104	0					21	8	3	0	0	0	0.28216	1	7128	7128		32.037	11.457	1	19844000			16954	2123	12245	12339	16601	16601					-0.03817188739003541
GEYGRHSLY	9	Unmodified	_GEYGRHSLY_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-MSMS	A375_MHC_IP_R2	2	540.653076171875	2	541.256705	1080.49886	-1.1108	-0.0006012	0.90963	0.00049234	-0.20112	-0.00010886	541.256468795275	24.176	0.50825	24.82	24.602	25.11	0.64368					10	5	3	0	0	0	0.14858	1	7912	7912		41.956	11.319	1	6113800			16955	2123	12245	12339	16602	16602					-0.03817188739003541
GEYGRHSLY	9	Unmodified	_GEYGRHSLY_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-SECPEP	A375_MHC_IP_R2	2	361.5732116699219	3	361.173562	1080.49886	-0.47529	-0.00017166	0.023306	8.4174E-06	-0.45198	-0.00016324	361.1735461538452	24.186	0.61001	24.83	24.653	25.263	0.64368					25	11	4	0	0	0	0.49205	1	7906	7906		26.021	26.021	1	15165000			16956	2123	12245	12339	16603	16603					-0.03817188739003541
GEYPSGINTW	10	Unmodified	_GEYPSGINTW_					0	0	0		ENST00000521583.5_1_5:154238316-154247291:+|nuORF;nc|ENSG00000155508|Q9UFF9-3|CNOT8;ENSG00000155508|ENST00000285896|CNOT8	ENST00000521583.5_1_5:154238316-154247291:+|nuORF	ENST00000521583.5_1_5:154238316-154247291:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	562.2056884765625	2	562.256371	1122.49819	-0.472	-0.00026538	0.15082	8.4797E-05	-0.32118	-0.00018059	562.2564333968559	83.413	1.0652	83.413	82.924	83.989	0					59	20	4	0	0	0	0.0064141	2	30599	30444;30599		133.05	85.304	1	45124000			16957	6145	12246	12340	16604;16605	16605					-0.058160281787195345
GEYPSGINTW	10	Unmodified	_GEYPSGINTW_					0	0	0		ENST00000521583.5_1_5:154238316-154247291:+|nuORF;nc|ENSG00000155508|Q9UFF9-3|CNOT8;ENSG00000155508|ENST00000285896|CNOT8	ENST00000521583.5_1_5:154238316-154247291:+|nuORF	ENST00000521583.5_1_5:154238316-154247291:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	562.205322265625	2	562.256371	1122.49819	-0.56751	-0.00031909	-0.2987	-0.00016795	-0.86621	-0.00048703	562.2561438207313	82.802	1.062	83.544	83.144	84.206	0.74294					66	20	4	0	0	0	0.0064141	1	31452	31452		133.05	83.525	1	37574000			16958	6145	12246	12340	16606	16606					-0.058160281787195345
GEYQGRVLF	9	Unmodified	_GEYQGRVLF_					0	0	0		nc|ENSG00000177707|Q9NQS3-2|NECTIN3;nc|ENSG00000177707|Q9NQS3-3|NECTIN3;ENSG00000177707|ENST00000485303|NECTIN3	nc|ENSG00000177707|Q9NQS3-2|NECTIN3	nc|ENSG00000177707|Q9NQS3-2|NECTIN3	MULTI-MSMS	A375_MHC_IP_R1	1	534.7499389648438	2	534.777274	1067.53999	-0.69438	-0.00037134	0.31001	0.00016579	-0.38437	-0.00020555	534.7774260785621	60.56	0.61061	60.56	60.21	60.821	0					15	11	2	0	0	0	0.64136	1	21761	21761		12.241	12.241	1	1709100			16959	8105	12247	12341	16607	16607					0.008925723004722386
GEYQGRVLF	9	Unmodified	_GEYQGRVLF_					0	0	0		nc|ENSG00000177707|Q9NQS3-2|NECTIN3;nc|ENSG00000177707|Q9NQS3-3|NECTIN3;ENSG00000177707|ENST00000485303|NECTIN3	nc|ENSG00000177707|Q9NQS3-2|NECTIN3	nc|ENSG00000177707|Q9NQS3-2|NECTIN3	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1244506835938	2	534.777274	1067.53999	-1.1695	-0.0006254	0.40712	0.00021772	-0.76235	-0.00040769	534.7774260331255	59.729	0.55592	60.476	60.148	60.704	0.74714					16	10	2	0	0	0	0.37663	1	22602	22602		36.506	17.249	1	2375800			16960	8105	12247	12341	16608	16608					0.008925723004722386
GEYQGRVLF	9	Unmodified	_GEYQGRVLF_					0	0	0		nc|ENSG00000177707|Q9NQS3-2|NECTIN3;nc|ENSG00000177707|Q9NQS3-3|NECTIN3;ENSG00000177707|ENST00000485303|NECTIN3	nc|ENSG00000177707|Q9NQS3-2|NECTIN3	nc|ENSG00000177707|Q9NQS3-2|NECTIN3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	534.777274	1067.53999	-0.69438	-0.00037134	0.31001	0.00016579	-0.38437	-0.00020555	534.7774260785621	60.56	0.61061	60.56	60.21	60.821	0	0.041997	-5.4142E-05	NaN	36.506	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1709100			16961	8105	12247	12341							0.008925723004722386
GEYTLVVKW	9	Unmodified	_GEYTLVVKW_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153577219-153578780:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-SECPEP	A375_MHC_IP_R1	1	548.197265625	2	547.797675	1093.5808	-0.77952	-0.00042702	-0.17955	-9.8357E-05	-0.95906	-0.00052537	547.7974721312906	90.865	0.91345	90.865	90.488	91.401	0					39	17	3	0	0	0	0.046478	1	33361	33361		82.529	50.224	1	5943900			16962	9093	12248	12342	16609	16609					0.03774913620077314
GEYTLVVKW	9	Unmodified	_GEYTLVVKW_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153577219-153578780:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-SECPEP	A375_MHC_IP_R2	2	548.2123413085938	2	547.797675	1093.5808	-0.68711	-0.0003764	0.48171	0.00026388	-0.20541	-0.00011252	547.7978440880656	90.129	1.1702	90.86	90.493	91.664	0.7318					39	22	3	0	0	0	0.013591	1	34294	34294		106.94	50.763	1	4509600			16963	9093	12248	12342	16610	16610					0.03774913620077314
GFAAKALI	8	Unmodified	_GFAAKALI_					0	0	0			REV__ENST00000554611.5_1_14:100157455-100174039:+|nuORF	REV__ENST00000554611.5_1_14:100157455-100174039:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	396.14483642578125	2	395.744714	789.474875	-0.086223	-3.4122E-05	0.30526	0.0001208	0.21903	8.6682E-05	395.74474916671255	73.259	0.6619	73.994	73.684	74.345	0.73541					23	12	3	0	0	0	0.72761	1	27791	27791		26.341	1.6674	1	2638200	+		16964	16320	12249	12343	16611	16611					0.07171622565272173
GFALALLIIIV	11	Unmodified	_GFALALLIIIV_					0	0	0		ENSG00000167360|ENST00000300778|OR51Q1	ENSG00000167360|ENST00000300778|OR51Q1	ENSG00000167360|ENST00000300778|OR51Q1	MSMS	A375_MHC_IP_R2	2	572.0082397460938	2	571.88101	1141.74747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.73	1	106.49	105.99	106.99	0.75977								0	0	0	0.16331	1	39980	39980		1.4819	0	1				16965	7179	12250	12344	16612	16612					0.1822638651581201
GFALLQCMF	9	Unmodified	_GFALLQCMF_					0	0	0			REV__nc|ENSG00000243156|Q7RTP6-5|MICAL3	REV__nc|ENSG00000243156|Q7RTP6-5|MICAL3	MULTI-SECPEP	A375_MHC_IP_R2	2	514.608642578125	2	515.248449	1028.48234	-0.77316	-0.00039837	-1.6494	-0.00084985	-2.4226	-0.0012482	515.2476916976195	82.679	0.55379	83.422	83.144	83.698	0.74293					15	10	2	0	0	0	0.69504	1	31503	31503		4.3292	0	1	1330800	+		16966	27525	12251	12345	16613	16613					-0.03075729220950052
GFAPITCPHET	11	Unmodified	_GFAPITCPHET_					0	0	0			REV__ENST00000446789.2_1_13:113621986-113622999:-|nuORF	REV__ENST00000446789.2_1_13:113621986-113622999:-|nuORF	MSMS	A375_MHC_IP_R1	1	586.6978149414062	2	586.773874	1171.53319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.999	1	96.999	96.499	97.499	0								0	0	0	0.16179	1	35642	35642		9.3831	0.63772	1		+		16967	24860	12252	12346	16614	16614					-0.04571108642426225
GFASAGGWVI	10	Unmodified	_GFASAGGWVI_					0	0	0		tr|U7SN93|U7SN93_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01861PE=3SV=1	tr|U7SN93|U7SN93_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01861PE=3SV=1	tr|U7SN93|U7SN93_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01861PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	483.1456298828125	2	482.747985	963.481417	-0.33235	-0.00016044	-3.3587	-0.0016214	-3.6911	-0.0017819	482.74575376966084	33.454	0.45737	33.454	33.241	33.698	0					11	8	2	0	0	0	0.40101	1	10928	10928		34.102	1.9855	1	2704800			16968	29545	12253	12347	16615	16615					-0.001784842740107706
GFDIHPKG	8	Unmodified	_GFDIHPKG_					0	0	0			REV__nc|ENSG00000100146|P56693|SOX10	REV__nc|ENSG00000100146|P56693|SOX10	MULTI-SECPEP	A375_MHC_IP_R2	2	436.12689208984375	2	435.727052	869.439552	-0.39676	-0.00017288	0.27144	0.00011827	-0.12532	-5.4605E-05	435.72713028383424	50.668	0.55666	51.422	51.108	51.665	0.75406					19	10	2	0	0	0	0.95423	1	19051	19051		7.9102	0	1	2724600	+		16969	15747	12254	12348	16616	16616					-0.0003903996253029618
GFDRRCQLF	9	Unmodified	_GFDRRCQLF_					0	0	0			REV__ENSG00000198919|ENST00000361582|DZIP3	REV__ENSG00000198919|ENST00000361582|DZIP3	MULTI-SECPEP	A375_MHC_IP_R1	1	570.7140502929688	2	571.2822	1140.54985	-0.18346	-0.00010481	1.1924	0.0006812	1.0089	0.00057639	571.7834841743095	97.275	0.25233	97.275	97.137	97.389	0					6	4	2	0	0	0	0.74651	1	35766	35766		8.5933	0	1	1744400	+		16970	22447	12255	12349	16617	16617					-0.014805629657985264
GFDSIKAYHQ	10	Unmodified	_GFDSIKAYHQ_					0	0	0			REV__nc|ENSG00000165025|P43405-2|SYK	REV__nc|ENSG00000165025|P43405-2|SYK	MULTI-SECPEP	A375_MHC_IP_R2	2	389.9560241699219	3	389.192734	1164.55637	-0.51184	-0.00019921	1.0522	0.00040952	0.54039	0.00021032	389.5273399977074	26.678	0.20226	27.338	27.212	27.414	0.65992					5	3	2	0	0	0	0.93615	1	8997	8997		0.69767	0	1	1297900	+		16971	20540	12256	12350	16618	16618					-0.01932346533430973
GFDWNSPNTSN	11	Unmodified	_GFDWNSPNTSN_					0	0	0			REV__ENSG00000095981|ENST00000437525|KCNK16	REV__ENSG00000095981|ENST00000437525|KCNK16	MULTI-MSMS	A375_MHC_IP_R2	2	619.7392578125	2	619.757266	1237.49998	-0.63178	-0.00039155	0.91395	0.00056643	0.28217	0.00017488	619.7560705717552	88.522	0.15259	89.253	89.178	89.331	0.7318					4	2	2	0	0	0	0.72801	1	33683	33683		10.8	4.5937	1	665750	+		16972	17004	12257	12351	16619	16619					-0.10927019160749296
GFEAAKEKA	9	Unmodified	_GFEAAKEKA_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;CCT6A|p.L444Ffs*16|1|0.27|ENSG00000146731|chr7:56060920-56060921|-/CATT|frameshift_variant	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-SECPEP	A375_MHC_IP_R1	1	476.15020751953125	2	475.750724	949.486896	-0.61962	-0.00029479	-0.97702	-0.00046482	-1.5966	-0.0007596	475.7502168238021	94.172	0.65883	94.172	93.941	94.599	0					20	12	2	0	0	0	0.75466	1	34655	34655		1.8442	0	1	1169500			16973	5633	12258	12352	16620	16620					0.010131945178045498
GFFDPHVAFY	10	Unmodified	_GFFDPHVAFY_					0	0	0			REV__ENSG00000179152|ENST00000342649|TCAIM	REV__ENSG00000179152|ENST00000342649|TCAIM	MSMS	A375_MHC_IP_R1	1	600.3358764648438	2	600.279649	1198.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.122	1	83.122	82.622	83.622	0								0	0	0	0.15398	1	30409	30409		7.9102	0.62092	1		+		16974	21545	12259	12353	16621	16621					-0.0465854355677493
GFFVDFFDIF	10	Unmodified	_GFFVDFFDIF_					0	0	0		ENSG00000102763|ENST00000379310|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8	ENSG00000102763|ENST00000379310|VWA8	ENSG00000102763|ENST00000379310|VWA8	MULTI-SECPEP	A375_MHC_IP_R1	1	626.8424072265625	2	627.297507	1252.58046	-0.74495	-0.0004673	3.3529	0.0021033	2.608	0.001636	627.2984480891099	90.192	0.40532	90.192	90.032	90.437	0					11	7	2	0	0	0	0.91556	1	33183	33183		10.074	5.8844	1	1798100			16975	2391	12260	12354	16622	16622					-0.03572506099771999
GFGGSEEIPV	10	Unmodified	_GFGGSEEIPV_					0	0	0			REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	MSMS	A375_MHC_IP_R2	2	496.1555480957031	2	496.24019	990.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.286	1	65.026	64.526	65.526	0.74022								0	0	0	0.14862	1	24375	24375		20.454	2.3186	1		+		16976	19109	12261	12355	16623	16623					-0.029788155817186635
GFGRSPLA	8	Unmodified	_GFGRSPLA_					0	0	0		nc|ENSG00000164877|Q8IY33-2|MICALL2	nc|ENSG00000164877|Q8IY33-2|MICALL2	nc|ENSG00000164877|Q8IY33-2|MICALL2	MULTI-MSMS	A375_MHC_IP_R2	2	403.121826171875	2	402.72177	803.428987	0.037728	1.5194E-05	-0.10166	-4.0939E-05	-0.063928	-2.5745E-05	402.72170265342385	45.808	0.70514	46.573	46.252	46.957	0.76519					19	13	2	0	0	0	0.76654	1	17155	17155		15.847	0	1	1446600			16977	14735	12262	12356	16624	16624					0.01940977383048903
GFGVTCLIPN	10	Unmodified	_GFGVTCLIPN_					0	0	0		nc|ENSG00000167703|Q8N370-4|SLC43A2;ENSG00000167703|ENST00000301335|SLC43A2;nc|ENSG00000167703|Q8N370-3|SLC43A2	nc|ENSG00000167703|Q8N370-4|SLC43A2	nc|ENSG00000167703|Q8N370-4|SLC43A2	MSMS	A375_MHC_IP_R2	2	510.6917724609375	2	510.762778	1019.511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.87	1	69.605	69.105	70.105	0.73511								0	0	0	0.14804	1	26096	26096		21.537	1.0834	1				16978	7214	12263	12357	16625	16625					0.002027116798331008
GFHDSFSFY	9	Unmodified	_GFHDSFSFY_					0	0	0		PLCXD3|p.S36F|1|0.35|ENSG00000182836|chr5:41382531-41382531|G/A|missense_variant	PLCXD3|p.S36F|1|0.35|ENSG00000182836|chr5:41382531-41382531|G/A|missense_variant	PLCXD3|p.S36F|1|0.35|ENSG00000182836|chr5:41382531-41382531|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	554.1319580078125	2	553.732532	1105.45051	-1.5123	-0.00083739	1.4201	0.00078638	-0.092123	-5.1011E-05	553.7333499849236	29.426	0.35429	30.125	29.981	30.335	0.69872					10	6	2	0	0	0	0.5339	1	10308	10308		18.135	0	1	2531700			16979	15197	12264	12358	16626	16626					-0.09799682378888974
GFHSQLQSE	9	Unmodified	_GFHSQLQSE_					0	0	0			REV__nc|ENSG00000170734|Q9Y253-2|POLH	REV__nc|ENSG00000170734|Q9Y253-2|POLH	MSMS	A375_MHC_IP_R2	2	516.6973876953125	2	516.740888	1031.46722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.052	1	36.815	36.315	37.315	0.76338								0	0	0	0.15273	1	13110	13110		17.113	2.2746	1		+		16980	21015	12265	12359	16627	16627					-0.04725181492926822
GFIGLVGEPGI	11	Unmodified	_GFIGLVGEPGI_					0	0	0		ENST00000494090.6_1_9:116999272-117027356:+|nuORF;ENSG00000196739|ENST00000356083|COL27A1	ENST00000494090.6_1_9:116999272-117027356:+|nuORF	ENST00000494090.6_1_9:116999272-117027356:+|nuORF	MSMS	A375_MHC_IP_R2	2	529.69775390625	2	529.797675	1057.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.55	1	108.3	107.8	108.8	0.75436								0	0	0	0.12453	1	40629	40629		30.637	6.616	1				16981	9080	12266	12360	16628	16628					0.054309136201027286
GFISGNCWTA	10	Unmodified	_GFISGNCWTA_					0	0	0			REV__ENSG00000147100|ENST00000587091|SLC16A2	REV__ENSG00000147100|ENST00000587091|SLC16A2	MSMS	A375_MHC_IP_R2	2	528.1328735351562	2	528.234384	1054.45422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.889	1	36.653	36.153	37.153	0.76338								0	0	0	0.15207	1	13039	13039		13.906	3.0821	1		+		16982	19566	12267	12361	16629	16629					-0.07083335876677666
GFISKQELGM	10	Unmodified	_GFISKQELGM_					0	0	0		nc|ENSG00000183166|Q9BXU9-1|CALN1;ENSG00000183166|ENST00000395275|CALN1	nc|ENSG00000183166|Q9BXU9-1|CALN1	nc|ENSG00000183166|Q9BXU9-1|CALN1	MSMS	A375_MHC_IP_R1	1	555.2022094726562	2	555.286617	1108.55868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.72	1	111.72	111.22	112.22	0								0	0	0	0.14925	1	40953	40953		19.257	1.1106	1				16983	8472	12268	12362	16630	16630					0.008743658800312915
GFISSWRYLG	10	Unmodified	_GFISSWRYLG_					0	0	0		ENST00000289153.6_1_3:138474745-138478109:-|nuORF	ENST00000289153.6_1_3:138474745-138478109:-|nuORF	ENST00000289153.6_1_3:138474745-138478109:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	592.6558837890625	2	593.306198	1184.59784	-0.24486	-0.00014528	-0.36686	-0.00021766	-0.61172	-0.00036293	593.3059683960795	79.183	0.55938	79.183	78.859	79.418	0					15	10	2	0	0	0	0.92514	1	28901	28901		12.241	2.1667	1	2199800			16984	10463	12269	12363	16631	16631					0.012928342258874181
GFIVFAVLLLV	11	Unmodified	_GFIVFAVLLLV_					0	0	0		nc|ENSG00000172548|Q0D2K0-2|NIPAL4;ENSG00000172548|ENST00000311946|NIPAL4	nc|ENSG00000172548|Q0D2K0-2|NIPAL4	nc|ENSG00000172548|Q0D2K0-2|NIPAL4	MSMS	A375_MHC_IP_R2	2	595.9584350585938	2	595.88101	1189.74747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.84	1	115.53	115.03	116.03	0.68999								0	0	0	0.1623	1	43290	43290		6.7232	3.988	1				16985	7721	12270	12364	16632	16632					0.16018386515793281
GFKGSGII	8	Unmodified	_GFKGSGII_					0	0	0			REV__ENST00000466764.5_1_X:48436119-48436305:+|nuORF	REV__ENST00000466764.5_1_X:48436119-48436305:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	390.12689208984375	2	389.726521	777.438489	0.11051	4.3067E-05	0.54628	0.0002129	0.65679	0.00025597	389.7266400552835	37.789	0.66232	37.789	37.556	38.218	0					21	12	3	0	0	0	0.69059	1	12785	12785		46.921	0	1	5866100	+		16986	25043	12271	12365	16633	16633					0.04086745668575986
GFKLSRNHV	9	Unmodified	_GFKLSRNHV_					0	0	0		DDHD1|p.S341G|1|0.35|ENSG00000100523|chr14:53093436-53093436|T/C|missense_variant	DDHD1|p.S341G|1|0.35|ENSG00000100523|chr14:53093436-53093436|T/C|missense_variant	DDHD1|p.S341G|1|0.35|ENSG00000100523|chr14:53093436-53093436|T/C|missense_variant	MSMS	A375_MHC_IP_R1	1	353.25848388671875	3	353.201564	1056.58286	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.213	1	34.213	33.713	34.713	0								0	0	0	0.15486	1	11253	11253		7.609	0.50723	1				16987	721	12272	12366	16634	16634					0.056833871485423515
GFKRELNYV	9	Unmodified	_GFKRELNYV_					0	0	0		ENSG00000164978|ENST00000379158|NUDT2	ENSG00000164978|ENST00000379158|NUDT2	ENSG00000164978|ENST00000379158|NUDT2	MULTI-SECPEP	A375_MHC_IP_R1	1	562.716552734375	2	563.306198	1124.59784	-0.72408	-0.00040788	0.27457	0.00015467	-0.44952	-0.00025322	563.306341858114	67.217	1.3769	67.217	66.377	67.754	0					32	26	2	0	0	0	0.65246	1	24087	24087		10.824	1.4408	1	827010			16988	6901	12273	12367	16635	16635					0.040528342258767225
GFKYFFYNIFY	11	Unmodified	_GFKYFFYNIFY_					0	0	0			REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MULTI-SECPEP	A375_MHC_IP_R1	1	503.1196594238281	3	503.579818	1507.71762	-0.44932	-0.00022627	-1.0007	-0.00050393	-1.45	-0.0007302	503.9133938409846	37.753	0.25426	37.753	37.658	37.913	0					10	4	3	0	0	0	1.0002	1	12770	12770		1.3296	0.92138	1	1232100	+		16989	19903	12274	12368	16636	16636					-0.015925972202012417
GFLAFGFV	8	Unmodified	_GFLAFGFV_					0	0	0		ENSG00000128602|ENST00000249373|SMO	ENSG00000128602|ENST00000249373|SMO	ENSG00000128602|ENST00000249373|SMO	MULTI-SECPEP	A375_MHC_IP_R2	2	428.6180419921875	2	429.231439	856.448326	-0.47772	-0.00020505	-0.79763	-0.00034237	-1.2753	-0.00054742	429.23113073887464	19.065	0.24969	19.668	19.533	19.783	0.60308					6	4	2	0	0	0	0.972	1	5824	5824		2.8892	2.8892	1	1793000			16990	4152	12275	12369	16637	16637					0.014359336739516948
GFLDVYIERD	10	Unmodified	_GFLDVYIERD_					0	0	0		tr|U7T5G4|U7T5G4_FUSNUFormateacetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00052PE=3SV=1	tr|U7T5G4|U7T5G4_FUSNUFormateacetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00052PE=3SV=1	tr|U7T5G4|U7T5G4_FUSNUFormateacetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00052PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	410.6363220214844	3	409.539911	1225.5979	-0.10025	-4.1057E-05	0.79455	0.0003254	0.69429	0.00028434	409.54020743772895	41.517	0.45673	42.292	42.047	42.504	0.77451					27	8	4	0	0	0	0.71361	1	15329	15329		3.3196	0.68841	1	7573100			16991	30021	12276	12370	16638	16638					-0.005872105647540593
GFLEASGLREV	11	Unmodified	_GFLEASGLREV_					0	0	0		ENST00000274203.13_1_5:16666605-16666782:-|nuORF	ENST00000274203.13_1_5:16666605-16666782:-|nuORF	ENST00000274203.13_1_5:16666605-16666782:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	392.6326904296875	3	393.211906	1176.61389	0.25249	9.9282E-05	0.61858	0.00024323	0.87107	0.00034251	393.21202946197434	44.289	0.30855	44.289	44.061	44.37	0					12	5	3	0	0	0	0.98524	1	15450	15450		5.8681	0	1	893620			16992	10394	12277	12371	16639	16639					0.032644956721242124
GFLGFAFSLV	10	Unmodified	_GFLGFAFSLV_					0	0	0			REV__TPTE|p.S90L|1|0.14|ENSG00000274391|chr21:10559529-10559529|C/T|missense_variant	REV__TPTE|p.S90L|1|0.14|ENSG00000274391|chr21:10559529-10559529|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	529.6904907226562	2	529.289485	1056.56442	-0.4101	-0.00021706	3.1464	0.0016653	2.7363	0.0014483	529.2909118511558	110.16	0.5118	110.89	110.58	111.09	0.73692					14	9	2	0	0	0	0.24735	1	41570	41570		44.407	0	1	2001800	+		16993	28156	12278	12372	16640	16640					0.038398324539684836
GFLGFAFSLV	10	Unmodified	_GFLGFAFSLV_					0	0	0			REV__TPTE|p.S90L|1|0.14|ENSG00000274391|chr21:10559529-10559529|C/T|missense_variant	REV__TPTE|p.S90L|1|0.14|ENSG00000274391|chr21:10559529-10559529|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	529.289485	1056.56442	-0.4101	-0.00021706	3.1464	0.0016653	2.7363	0.0014483	529.2909118511558	110.16	0.5118	110.89	110.58	111.09	0.73692	-0.1336	-0.00070585	NaN	44.407	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2001800	+		16994	28156	12278	12372							0.038398324539684836
GFLISQPPL	9	Unmodified	_GFLISQPPL_					0	0	0		ENST00000320027.9_1_13:31735897-31735996:-|nuORF	ENST00000320027.9_1_13:31735897-31735996:-|nuORF	ENST00000320027.9_1_13:31735897-31735996:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	486.31817626953125	2	486.28166	970.548768	-0.6722	-0.00032688	-0.077958	-3.791E-05	-0.75015	-0.00036479	486.2815713183532	80.75	1.0686	81.494	81.062	82.13	0.74474					31	20	2	0	0	0	0.61998	1	30870	30870		13.906	1.3745	1	11577000			16995	10687	12279	12373	16641	16641					0.06231545936930161
GFLKESNDL	9	Unmodified	_GFLKESNDL_					0	0	0			REV__nc|ENSG00000100014|Q69YQ0-2|SPECC1L	REV__nc|ENSG00000100014|Q69YQ0-2|SPECC1L	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1607055664062	2	511.761289	1021.50803	-0.92077	-0.00047121	0.68694	0.00035155	-0.23383	-0.00011967	511.761430576258	54.82	0.66097	55.571	55.169	55.83	0.75075					21	12	2	0	0	0	0.39388	1	20722	20722		39.957	7.6518	1	1876900	+		16996	17041	12280	12374	16642	16642					-0.001868401733418068
GFLKGAVLYV	10	Unmodified	_GFLKGAVLYV_					0	0	0			REV__ENSG00000108557|ENST00000353383|RAI1	REV__ENSG00000108557|ENST00000353383|RAI1	MULTI-SECPEP	A375_MHC_IP_R2	2	534.2179565429688	2	533.81841	1065.62227	-0.73355	-0.00039158	-0.99295	-0.00053006	-1.7265	-0.00092164	533.8179763622059	44.36	0.35487	45.129	44.934	45.289	0.7691					9	6	2	0	0	0	0.9269	1	16602	16602		3.5965	0	1	1525800	+		16997	17538	12281	12375	16643	16643					0.0920809437943717
GFLSGSISGF	10	Unmodified	_GFLSGSISGF_					0	0	0			REV__NUP98|p.T143I|1|0.39|ENSG00000110713|chr11:3775949-3775949|G/A|missense_variant	REV__NUP98|p.T143I|1|0.39|ENSG00000110713|chr11:3775949-3775949|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	486.6452331542969	2	486.245275	970.475997	-0.61403	-0.00029857	0.42026	0.00020435	-0.19377	-9.422E-05	486.24547947515697	67.693	1.0138	67.693	67.297	68.31	0					37	19	3	0	0	0	0.49527	1	24486	24486		28.487	5.3384	1	6616600	+		16998	27634	12282	12376	16644	16644					-0.010422078564602089
GFLSLGLMMLV	11	Unmodified	_GFLSLGLMMLV_					0	0	0		ENSG00000233670|ENST00000580256|PIRT	ENSG00000233670|ENST00000580256|PIRT	ENSG00000233670|ENST00000580256|PIRT	MULTI-MSMS	A375_MHC_IP_R1	1	394.9549865722656	3	394.220468	1179.63957	0.024559	9.6818E-06	0.61924	0.00024412	0.6438	0.0002538	394.2206808244638	63.979	0.50735	63.979	63.684	64.191	0					23	9	3	0	0	0	0.72565	1	23147	23147		7.0371	0	1	2151800			16999	9736	12283	12377	16645	16645					0.05693930598567931
GFNNFMLY	8	Unmodified	_GFNNFMLY_					0	0	0		nc|ENSG00000240403|P43630-2|KIR3DL2;ENSG00000240403|ENST00000326321|KIR3DL2	nc|ENSG00000240403|P43630-2|KIR3DL2	nc|ENSG00000240403|P43630-2|KIR3DL2	MULTI-SECPEP	A375_MHC_IP_R1	1	503.15087890625	2	503.228571	1004.44259	-0.39075	-0.00019663	0.60008	0.00030198	0.20934	0.00010534	503.2287683821036	64.147	0.50589	64.147	63.939	64.444	0					16	9	3	0	0	0	0.93416	1	23182	23182		20.871	20.871	1	1250100			17000	9773	12284	12378	16646	16646					-0.05945532900034323
GFNNFMLY	8	Unmodified	_GFNNFMLY_					0	0	0		nc|ENSG00000240403|P43630-2|KIR3DL2;ENSG00000240403|ENST00000326321|KIR3DL2	nc|ENSG00000240403|P43630-2|KIR3DL2	nc|ENSG00000240403|P43630-2|KIR3DL2	MULTI-MSMS	A375_MHC_IP_R2	2	503.6283874511719	2	503.228571	1004.44259	-0.59334	-0.00029859	0.18147	9.1321E-05	-0.41188	-0.00020727	503.22851039602415	63.349	0.50933	64.089	63.885	64.394	0.74022					14	9	2	0	0	0	0.7479	1	24037	24037		20.871	5.024	1	1622900			17001	9773	12284	12378	16647	16647					-0.05945532900034323
GFNSQHSSFFI	11	Unmodified	_GFNSQHSSFFI_					0	0	0		ENSG00000197275|ENST00000336148|RAD54B	ENSG00000197275|ENST00000336148|RAD54B	ENSG00000197275|ENST00000336148|RAD54B	MULTI-SECPEP	A375_MHC_IP_R2	2	423.93170166015625	3	424.199889	1269.57784	-0.29839	-0.00012658	1.6527	0.00070107	1.3543	0.0005745	424.20061038857085	50.561	0.40621	51.315	51.006	51.412	0.75406					10	7	2	0	0	0	0.99819	1	19028	19028		1.9275	0	1	798220			17002	9139	12285	12379	16648	16648					-0.046169615047119805
GFNTVGRLVF	10	Unmodified	_GFNTVGRLVF_					0	0	0		ENSG00000170185|ENST00000307017|USP38	ENSG00000170185|ENST00000307017|USP38	ENSG00000170185|ENST00000307017|USP38	MSMS	A375_MHC_IP_R1	1	555.3230590820312	2	555.308741	1108.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.992	1	90.992	90.492	91.492	0								0	0	0	0.14983	1	33434	33434		18.146	6.5061	1				17003	7479	12286	12380	16649	16649					0.05297138088508291
GFQCYSNNVA	10	Unmodified	_GFQCYSNNVA_					0	0	0			REV__ENSG00000185291|ENST00000331035|IL3RA	REV__ENSG00000185291|ENST00000331035|IL3RA	MSMS	A375_MHC_IP_R1	1	551.6932983398438	2	551.734748	1101.45494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.722	1	45.722	45.222	46.222	0								0	0	0	0.15332	1	16012	16012		10.074	0.72649	1		+		17004	21886	12287	12381	16650	16650					-0.09172541227667352
GFQDVEEYQE	10	Unmodified	_GFQDVEEYQE_					0	0	0			REV__nc|ENSG00000168334|Q702N8-3|XIRP1	REV__nc|ENSG00000168334|Q702N8-3|XIRP1	MSMS	A375_MHC_IP_R1	1	622.256103515625	2	622.259308	1242.50406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.064	1	78.064	77.564	78.564	0								0	0	0	0.15451	1	28493	28493		6.2058	0.47393	1		+		17005	20845	12288	12382	16651	16651					-0.10748974457692384
GFQRKEKPDG	10	Unmodified	_GFQRKEKPDG_					0	0	0			REV__ENST00000526682.5_1_11:36398008-36415533:+|nuORF	REV__ENST00000526682.5_1_11:36398008-36415533:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	581.7042846679688	2	581.304187	1160.59382	-0.43795	-0.00025458	0.20878	0.00012136	-0.22917	-0.00013322	581.3040001379428	44.697	0.45737	45.466	45.188	45.646	0.7691					15	8	2	0	0	0	0.56504	1	16679	16679		41.84	0	1	3916900	+		17006	25779	12289	12383	16652	16652					0.01994744732178333
GFQRLDLRLLE	11	Unmodified	_GFQRLDLRLLE_					0	0	0		ENSG00000121904|ENST00000373381|CSMD2;nc|ENSG00000121904|Q7Z408|CSMD2	ENSG00000121904|ENST00000373381|CSMD2	ENSG00000121904|ENST00000373381|CSMD2	MSMS	A375_MHC_IP_R1	1	453.97161865234375	3	453.929621	1358.76703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.069	1	35.069	34.569	35.569	0								0	0	0	0.16172	1	11631	11631		9.7643	1.0125	1				17007	3748	12290	12384	16653	16653					0.10200110788582606
GFQVEYKDF	9	Unmodified	_GFQVEYKDF_					0	0	0		nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1	nc|ENSG00000124214|O95793-2|STAU1	nc|ENSG00000124214|O95793-2|STAU1	MSMS	A375_MHC_IP_R1	1	566.6991577148438	2	566.769114	1131.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.975	1	45.975	45.475	46.475	0								0	0	0	0.1521	1	16111	16111		18.135	3.2967	1				17008	3885	12291	12385	16654	16654					-0.03682553656312848
GFRIYNIIL	9	Unmodified	_GFRIYNIIL_					0	0	0			REV__FSTL4|p.H607Y|1|0.26|ENSG00000053108|chr5:133201940-133201940|G/A|missense_variant	REV__FSTL4|p.H607Y|1|0.26|ENSG00000053108|chr5:133201940-133201940|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	370.56292724609375	3	370.221965	1107.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.896	1	69.896	69.396	70.396	0								0	0	0	0.15486	1	25369	25369		0.26902	0	1		+		17009	26656	12292	12386	16655	16655					0.09454899127990757
GFRSAAENL	9	Unmodified	_GFRSAAENL_					0	0	0			REV__ENST00000554655.5_1_14:24837525-24841293:+|nuORF	REV__ENST00000554655.5_1_14:24837525-24841293:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	482.6983947753906	2	482.745973	963.477394	-0.63936	-0.00030865	-0.2081	-0.00010046	-0.84746	-0.00040911	482.74581355464267	32.685	0.55937	33.422	33.112	33.671	0.73691					17	10	2	0	0	0	0.34064	1	11700	11700		27.629	4.8925	1	2172100	+		17010	17132	12293	12387	16656	16656					-0.0058057376772922
GFSETFGV	8	Unmodified	_GFSETFGV_					0	0	0			REV__nc|ENSG00000077235|Q12789-3|GTF3C1	REV__nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	A375_MHC_IP_R1	1	422.0993957519531	2	422.197793	842.381034	0.0060027	2.5343E-06	0.91411	0.00038594	0.92011	0.00038847	422.1987498722146	100.22	0.96259	100.22	99.975	100.94	0					44	18	3	0	0	0	0.7479	1	36817	36817		20.871	1.4322	1	10064000	+		17011	27118	12294	12388	16657	16657					-0.046461413276574604
GFSGQSPNIN	10	Unmodified	_GFSGQSPNIN_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	A375_MHC_IP_R2	2	510.662841796875	2	510.740888	1019.46722	-1.0339	-0.00052803	-1.4001	-0.00071509	-2.434	-0.0012431	510.74100853847057	38.127	0.51249	38.901	38.687	39.2	0.77451					21	9	5	0	0	0	0.52785	1	14099	14099		26.268	1.5943	1	4572000	+		17012	22555	12295	12389	16658	16658					-0.04173181492967615
GFSHLFEVI	9	Unmodified	_GFSHLFEVI_					0	0	0			REV__ENST00000551759.1_1_12:56998820-56999634:-|nuORF	REV__ENST00000551759.1_1_12:56998820-56999634:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	524.3754272460938	2	524.776742	1047.53893	-0.48248	-0.00025319	-0.36335	-0.00019068	-0.84583	-0.00044387	524.7764504755645	74.691	0.60964	74.691	74.349	74.958	0					28	11	3	0	0	0	0.55359	1	27122	27122		15.847	0	1	5162000	+		17013	16669	12296	12390	16659	16659					0.01706357931561797
GFSKCFQIRQ	10	Unmodified	_GFSKCFQIRQ_					0	0	0		ENST00000533469.5_1_1:211449632-211451486:+|nuORF	ENST00000533469.5_1_1:211449632-211451486:+|nuORF	ENST00000533469.5_1_1:211449632-211451486:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	607.712646484375	2	607.310958	1212.60736	-0.66635	-0.00040468	3.1424	0.0019084	2.4761	0.0015037	607.3120236826151	56.173	0.4588	56.923	56.745	57.203	0.75015					14	8	2	0	0	0	0.9269	1	21263	21263		0.35063	0	1	2345100			17014	13200	12297	12391	16660	16660					0.009562792397673547
GFSQEQLNW	9	Unmodified	_GFSQEQLNW_					0	0	0		ENSG00000170222|ENST00000379774|ADPRM	ENSG00000170222|ENST00000379774|ADPRM	ENSG00000170222|ENST00000379774|ADPRM	MULTI-SECPEP	A375_MHC_IP_R1	1	555.15625	2	554.756538	1107.49852	-0.78744	-0.00043684	1.5481	0.0008588	0.76063	0.00042196	555.259151235986	90.93	1.1676	90.93	90.336	91.503	0					44	22	4	0	0	0	0.062502	1	33394	33394		103.75	3.9493	1	3623900			17015	7482	12298	12392	16661	16661					-0.050926084588581944
GFSRSNPYYI	10	Unmodified	_GFSRSNPYYI_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	A375_MHC_IP_R2	2	602.6929321289062	2	602.293288	1202.57202	-0.63565	-0.00038285	0.075362	4.539E-05	-0.56029	-0.00033746	602.2934519479261	49.041	0.66069	49.798	49.485	50.145	0.75737					26	12	4	0	0	0	0.68638	1	18399	18399		14.405	2.1647	1	3165300			17016	2781	12299	12393	16662	16662					-0.021160600163966592
GFSRSNPYYI	10	Unmodified	_GFSRSNPYYI_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MATCH	A375_MHC_IP_R1	1		2	602.293288	1202.57202	-0.095211	-5.7345E-05	-0.043767	-2.6361E-05	-0.13898	-8.3706E-05	602.2932753232146	49.717	0.50845	49.717	49.439	49.947	0	-0.040246	-9.7833E-05	NaN	14.405	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3555000			17017	2781	12299	12393							-0.021160600163966592
GFSVDNSAGS	10	Unmodified	_GFSVDNSAGS_					0	0	0		ENST00000270257.8_1_19:45582618-45583216:+|nuORF	ENST00000270257.8_1_19:45582618-45583216:+|nuORF	ENST00000270257.8_1_19:45582618-45583216:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	470.6318664550781	2	470.703971	939.393389	-0.914	-0.00043022	-0.32304	-0.00015206	-1.237	-0.00058228	470.70372448699345	61.466	0.45313	62.211	61.97	62.423	0.74504					16	8	2	0	0	0	0.71245	1	23364	23364		6.7232	0	1	2308700			17018	10375	12300	12394	16663	16663					-0.07873149655279121
GFSVDNSAGS	10	Unmodified	_GFSVDNSAGS_					0	0	0		ENST00000270257.8_1_19:45582618-45583216:+|nuORF	ENST00000270257.8_1_19:45582618-45583216:+|nuORF	ENST00000270257.8_1_19:45582618-45583216:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	470.703971	939.393389	-0.31306	-0.00014736	-0.40277	-0.00018959	-0.71583	-0.00033694	470.70368869804815	62.122	0.51215	62.122	61.891	62.403	0	-0.044376	-4.3552E-05	NaN	6.7232	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2982500			17019	10375	12300	12394							-0.07873149655279121
GFSYIMRGAF	10	Unmodified	_GFSYIMRGAF_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-SECPEP	A375_MHC_IP_R1	1	574.1486206054688	2	574.781502	1147.54845	-0.11823	-6.7955E-05	3.2817	0.0018863	3.1635	0.0018183	574.7835285337252	35.115	0.15355	35.115	35.013	35.167	0					4	2	2	0	0	0	0.91556	1	11669	11669		14.838	1.7958	1	651970			17020	10030	12301	12395	16664	16664					-0.019421970545636214
GFSYRQKI	8	Unmodified	_GFSYRQKI_					0	0	0		ADAMTS20|p.R1611K|1|0.14|ENSG00000173157|chr12:43377528-43377528|C/T|missense_variant	ADAMTS20|p.R1611K|1|0.14|ENSG00000173157|chr12:43377528-43377528|C/T|missense_variant	ADAMTS20|p.R1611K|1|0.14|ENSG00000173157|chr12:43377528-43377528|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	500.2213439941406	2	499.774534	997.534515	-0.37678	-0.0001883	-0.15693	-7.8429E-05	-0.5337	-0.00026673	500.2768485190359	60.341	0.25452	60.341	60.159	60.414	0					6	4	2	0	0	0	0.7338	1	21679	21679		24.674	1.5255	1	834220			17021	54	12302	12396	16665	16665					0.035648935086555866
GFVSLALH	8	Unmodified	_GFVSLALH_					0	0	0		TNFSF9|p.S160F|1|0.64|ENSG00000125657|chr19:6534780-6534780|C/T|missense_variant	TNFSF9|p.S160F|1|0.64|ENSG00000125657|chr19:6534780-6534780|C/T|missense_variant	TNFSF9|p.S160F|1|0.64|ENSG00000125657|chr19:6534780-6534780|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	422.6395568847656	2	422.239796	842.465038	-0.22632	-9.5561E-05	-1.1506	-0.00048584	-1.3769	-0.0005814	422.2392075850397	41.72	1.2223	42.495	41.845	43.067	0.77451					32	23	2	0	0	0	0.75322	1	15393	15393		19.439	0	1	1894000			17022	29370	12303	12397	16666	16666					0.03750434559879068
GFYISPRITFS	11	Unmodified	_GFYISPRITFS_					0	0	0		LCK|p.P200S|1|0.2|ENSG00000182866|chr1:32276030-32276030|C/T|missense_variant	LCK|p.P200S|1|0.2|ENSG00000182866|chr1:32276030-32276030|C/T|missense_variant	LCK|p.P200S|1|0.2|ENSG00000182866|chr1:32276030-32276030|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	644.3587036132812	2	644.340238	1286.66592	-0.38081	-0.00024537	0.71811	0.00046271	0.3373	0.00021733	644.3406401921609	70.713	1.2283	70.713	70.085	71.313	0					36	23	2	0	0	0	0.73064	1	25661	25661		14.405	2.9107	1	2101400			17023	14289	12304	12398	16667	16667					0.034056590858881464
GFYKMAQPIPS	11	Unmodified	_GFYKMAQPIPS_					0	0	0		ENST00000354258.4_1_6:32820192-32820818:-|nuORF	ENST00000354258.4_1_6:32820192-32820818:-|nuORF	ENST00000354258.4_1_6:32820192-32820818:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	412.97491455078125	3	413.54612	1237.61653	0.14699	6.0785E-05	-2.3356	-0.0009659	-2.1887	-0.00090511	413.8801498989913	19.495	0.20295	19.495	19.42	19.623	0					5	3	2	0	0	0	0.99165	1	4883	4883		5.8681	0	1	590450			17024	10936	12305	12399	16668	16668					0.007226278054531576
GGAACSCN	8	Unmodified	_GGAACSCN_					0	0	0			REV__ENSG00000244020|ENST00000464121|MT1HL1	REV__ENSG00000244020|ENST00000464121|MT1HL1	MULTI-SECPEP	A375_MHC_IP_R2	2	682.0830078125	1	682.228321	681.221045	-0.72777	-0.00049651	-1.9236	-0.0013123	-2.6514	-0.0018088	682.2289785504407	81.679	1.4229	82.422	81.161	82.584	0.74294					39	27	2	0	0	0	0.972	1	30862	30862		0.79363	0	1	1265200	+		17025	22818	12306	12400	16669	16669					-0.13231715868005267
GGAEIWPV	8	Unmodified	_GGAEIWPV_					0	0	0		ENST00000255882.10_2_22:21088773-21096558:-|nuORF	ENST00000255882.10_2_22:21088773-21096558:-|nuORF	ENST00000255882.10_2_22:21088773-21096558:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	414.940185546875	2	414.716153	827.417754	0.40498	0.00016795	-0.10985	-4.5558E-05	0.29513	0.00012239	414.716002213875	43.56	0.71025	43.56	43.249	43.959	0					20	13	2	0	0	0	0.97144	1	15062	15062		9.3474	6.77	1	1595200			17026	10233	12307	12401	16670	16670					-0.002858447110952511
GGAGGACS	8	Unmodified	_GGAGGACS_					0	0	0			REV__ENST00000448629.5_1_1:1334974-1335667:+|nuORF	REV__ENST00000448629.5_1_1:1334974-1335667:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	578.7203979492188	1	579.219137	578.21186	0.10949	6.3417E-05	-2.7336	-0.0015834	-2.6241	-0.00152	579.2171559140905	127.65	0.25233	127.65	127.52	127.77	0					6	4	2	0	0	0	0.972	1	48911	48911		0.79363	0	1	3871500	+		17027	24833	12308	12402	16671	16671					-0.0941174116202319
GGASAMLIQKL	11	Unmodified	_GGASAMLIQKL_					0	0	0		ENST00000533597.1_1_11:108016907-108018114:+|nuORF;ENSG00000075239|ENST00000265838|ACAT1	ENST00000533597.1_1_11:108016907-108018114:+|nuORF	ENST00000533597.1_1_11:108016907-108018114:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	545.20947265625	2	544.810259	1087.60597	-0.50542	-0.00027536	-0.86936	-0.00047364	-1.3748	-0.000749	544.8099817886023	72.98	0.55777	72.98	72.728	73.285	0					14	10	2	0	0	0	0.041951	1	26585	26585		61.09	43.647	1	1566900			17028	13201	12309	12403	16672	16672					0.06566645150996919
GGASAMLIQKL	11	Unmodified	_GGASAMLIQKL_					0	0	0		ENST00000533597.1_1_11:108016907-108018114:+|nuORF;ENSG00000075239|ENST00000265838|ACAT1	ENST00000533597.1_1_11:108016907-108018114:+|nuORF	ENST00000533597.1_1_11:108016907-108018114:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	545.2092895507812	2	544.810259	1087.60597	-1.033	-0.00056279	-0.74914	-0.00040814	-1.7821	-0.00097093	544.8099588701724	72.093	0.55561	72.827	72.567	73.122	0.73421					17	10	2	0	0	0	0.14752	1	27398	27398		61.09	38.354	1	1285500			17029	13201	12309	12403	16673	16673					0.06566645150996919
GGCGGGFG	8	Unmodified	_GGCGGGFG_					0	0	0		ENST00000529511.2_1_11:84256393-84256642:-|nuORF	ENST00000529511.2_1_11:84256393-84256642:-|nuORF	ENST00000529511.2_1_11:84256393-84256642:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	610.7918090820312	1	611.224222	610.216945	-0.30629	-0.00018721	0.30155	0.00018432	-0.0047408	-2.8977E-06	611.2249753652621	73.221	0.30524	73.221	72.98	73.285	0					6	5	2	0	0	0	0.972	1	26623	26623		0	0	1	723950			17030	13129	12310	12404	16674	16674					-0.10375437299398982
GGCGPHHY	8	Unmodified	_GGCGPHHY_					0	0	0			REV__ENSG00000177409|ENST00000318238|SAMD9L;REV__ENSG00000205413|ENST00000379958|SAMD9	REV__ENSG00000177409|ENST00000318238|SAMD9L	MULTI-MSMS	A375_MHC_IP_R2	2	827.7243041992188	1	827.325333	826.318056	-0.59588	-0.00049299	-0.17766	-0.00014698	-0.77354	-0.00063997	827.3250003007815	145.33	0.11288	145.35	145.28	145.4	0.021408					12	6	3	0	0	0	0.77861	1	56744	56744		0	0	1	467750	+		17031	21455;22573	12311	12405	16675	16675					-0.10204985596703864
GGDSACTY	8	Unmodified	_GGDSACTY_					0	0	0			REV__nc|ENSG00000166006|Q96PR1-3|KCNC2	REV__nc|ENSG00000166006|Q96PR1-3|KCNC2	MULTI-SECPEP	A375_MHC_IP_R2	2	772.6737670898438	1	773.277045	772.269769	-1.2056	-0.00093227	-4.1658	-0.0032213	-5.3714	-0.0041536	773.2753088344261	18.643	0.053549	19.246	19.225	19.279	0.60308					6	4	2	0	0	0	0.972	1	5563	5563		0	0	1	97073	+		17032	20643	12312	12406	16676	16676					-0.12547524027274903
GGDTIYLANY	10	Unmodified	_GGDTIYLANY_					0	0	0		ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	MULTI-MSMS	A375_MHC_IP_R1	1	543.6671752929688	2	543.758746	1085.50294	-0.64518	-0.00035082	-0.69361	-0.00037716	-1.3388	-0.00072798	543.7585154818321	58.551	0.60884	58.551	58.177	58.786	0					22	11	3	0	0	0	0.39599	1	21007	21007		34.402	5.3201	1	3820500			17033	8044	12313	12407	16677	16677					-0.03639144035946629
GGDTNTQHKRW	11	Unmodified	_GGDTNTQHKRW_					0	0	0			REV__ENST00000544283.5_1_2:91823926-91845846:-|nuORF	REV__ENST00000544283.5_1_2:91823926-91845846:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	650.7120361328125	2	650.313074	1298.6116	-1.1207	-0.00072882	-1.15	-0.00074788	-2.2707	-0.0014767	650.3122052786855	24.737	0.50676	25.381	25.212	25.719	0.64368					16	9	2	0	0	0	0.57844	1	8197	8197		24.991	7.8781	1	3687300	+		17034	25983	12314	12408	16678	16678					-0.025765400129557747
GGDTNTQHKRW	11	Unmodified	_GGDTNTQHKRW_					0	0	0			REV__ENST00000544283.5_1_2:91823926-91845846:-|nuORF	REV__ENST00000544283.5_1_2:91823926-91845846:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	650.313074	1298.6116	-0.33466	-0.00021763	-1.9047	-0.0012387	-2.2394	-0.0014563	650.3117322094621	25.248	0.50851	25.248	25.002	25.511	0	-0.066617	-0.00037904	NaN	24.991	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3238100	+		17035	25983	12314	12408							-0.025765400129557747
GGEEFEVLEY	10	Unmodified	_GGEEFEVLEY_					0	0	0		RPGRIP1|p.G746E|1|0.32|ENSG00000092200|chr14:21325253-21325253|G/A|missense_variant	RPGRIP1|p.G746E|1|0.32|ENSG00000092200|chr14:21325253-21325253|G/A|missense_variant	RPGRIP1|p.G746E|1|0.32|ENSG00000092200|chr14:21325253-21325253|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	586.6593627929688	2	586.261319	1170.50808	-0.86559	-0.00050746	0.01726	1.0119E-05	-0.84833	-0.00049734	586.259864353933	57.563	0.60972	58.312	58.019	58.629	0.74894					37	11	6	0	0	0	0.19329	1	21768	21768		49.933	2.1843	1	5270500			17036	29093	12315	12409	16679	16679					-0.07034884963991317
GGEEGEHVKPF	11	Unmodified	_GGEEGEHVKPF_					0	0	0		ENSG00000169087|ENST00000306103|HSPBAP1;nc|ENSG00000169087|Q96EW2-2|HSPBAP1;ENST00000467643.5_1_3:122474254-122512599:-|nuORF;nc|ENSG00000169087|Q96EW2-3|HSPBAP1;ENST00000465044.5_1_3:122473819-122512560:-|nuORF	ENSG00000169087|ENST00000306103|HSPBAP1	ENSG00000169087|ENST00000306103|HSPBAP1	MULTI-MSMS	A375_MHC_IP_R1	1	593.6804809570312	2	593.280377	1184.5462	-0.20269	-0.00012025	0.68534	0.0004066	0.48266	0.00028635	593.2804041624166	44.139	0.81767	44.139	43.909	44.727	0					40	15	4	0	0	0	0.51633	1	15390	15390		29.841	4.8496	1	11276000			17037	7380	12316	12410	16680	16680					-0.03868954258678059
GGELLPQIFW	10	Unmodified	_GGELLPQIFW_					0	0	0		ENST00000244745.3_2_6:21594483-21594732:+|nuORF	ENST00000244745.3_2_6:21594483-21594732:+|nuORF	ENST00000244745.3_2_6:21594483-21594732:+|nuORF	MSMS	A375_MHC_IP_R2	2	580.3141479492188	2	580.310949	1158.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.962	1	88.693	88.193	89.193	0.7318								0	0	0	0.14555	1	33467	33467		26.268	4.678	1				17038	10180	12317	12411	16681	16681					0.03438602511437239
GGFAGLTSTV	10	Unmodified	_GGFAGLTSTV_					0	0	0		nc|ENSG00000115705|P07202-5|TPO;nc|ENSG00000115705|P07202-8|TPO;nc|ENSG00000115705|P07202-7|TPO;nc|ENSG00000115705|P07202-2|TPO;nc|ENSG00000115705|P07202-4|TPO;nc|ENSG00000115705|P07202-3|TPO;ENSG00000115705|ENST00000329066|TPO	nc|ENSG00000115705|P07202-5|TPO	nc|ENSG00000115705|P07202-5|TPO	MULTI-MSMS	A375_MHC_IP_R2	2	455.16375732421875	2	455.23745	908.460347	-0.36167	-0.00016464	0.44659	0.0002033	0.084922	3.866E-05	455.2376428740324	66.317	0.86801	67.054	66.729	67.597	0.73631					41	16	4	0	0	0	0.62155	1	25328	25328		19.257	1.1106	1	6751500			17039	3332	12318	12412	16682	16682					0.00245505626457998
GGFGHLLVLPT	11	Unmodified	_GGFGHLLVLPT_					0	0	0			REV__ENSG00000011198|ENST00000644371|ABHD5	REV__ENSG00000011198|ENST00000644371|ABHD5	MULTI-MSMS	A375_MHC_IP_R1	1	371.9171142578125	3	370.88172	1109.62333	0.16358	6.0669E-05	-0.24449	-9.0677E-05	-0.080908	-3.0007E-05	370.88171052134334	27.731	0.85706	27.731	27.381	28.238	0					43	16	4	0	0	0	0.73781	1	8399	8399		1.4551	0.38366	1	26445000	+		17040	16203	12319	12413	16683	16683					0.07290308748292773
GGFGPVVP	8	Unmodified	_GGFGPVVP_					0	0	0			REV__HOXA13|p.L258F|1|0.31|ENSG00000106031|chr7:27199306-27199306|G/A|missense_variant	REV__HOXA13|p.L258F|1|0.31|ENSG00000106031|chr7:27199306-27199306|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	364.9230651855469	2	365.200139	728.385725	-0.19231	-7.0231E-05	0.33415	0.00012203	0.14185	5.1802E-05	365.20015834145084	33.228	0.56082	33.981	33.635	34.196	0.75225					16	10	2	0	0	0	0.95327	1	11929	11929		17.087	14.197	1	2477800	+		17041	26752	12320	12414	16684	16684					0.010667876057596004
GGFLISRL	8	Unmodified	_GGFLISRL_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000141279|P55786-2|NPEPPS;ENST00000531486.1_1_17:45681241-45696545:+|nuORF;ENST00000530514.5_1_17:45668242-45699283:+|nuORF	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-SECPEP	A375_MHC_IP_R1	1	432.1606750488281	2	431.760895	861.507237	-0.35734	-0.00015429	-0.92485	-0.00039931	-1.2822	-0.0005536	431.760924870199	84.622	1.2707	84.622	84.041	85.311	0					44	24	3	0	0	0	0.26691	1	30959	30959		68.081	19.735	1	9736800			17042	5224	12321	12415	16685	16685					0.07094409968271975
GGFLISRL	8	Unmodified	_GGFLISRL_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000141279|P55786-2|NPEPPS;ENST00000531486.1_1_17:45681241-45696545:+|nuORF;ENST00000530514.5_1_17:45668242-45699283:+|nuORF	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-SECPEP	A375_MHC_IP_R2	2	432.1604309082031	2	431.760895	861.507237	-0.192	-8.2898E-05	-1.6916	-0.00073038	-1.8836	-0.00081328	431.7606575249466	83.523	1.2219	84.262	83.544	84.766	0.73962					33	23	2	0	0	0	0.2175	1	31699	31699		88.904	38.049	1	6899700			17043	5224	12321	12415	16686	16686					0.07094409968271975
GGFVDRRFW	9	Unmodified	_GGFVDRRFW_					0	0	0		ENSG00000168101|ENST00000304301|NUDT16L1;nc|ENSG00000168101|Q9BRJ7-2|NUDT16L1	ENSG00000168101|ENST00000304301|NUDT16L1	ENSG00000168101|ENST00000304301|NUDT16L1	MULTI-MSMS	A375_MHC_IP_R1	1	380.9299011230469	3	380.52968	1138.56721	0.089486	3.4052E-05	0.56905	0.00021654	0.65854	0.00025059	380.5298509331177	66.861	0.35637	66.861	66.684	67.04	0					12	6	2	0	0	0	0.46465	1	24255	24255		15.739	9.0155	1	1744100			17044	7266	12322	12416	16687	16687					0.0034710063152942894
GGFVGGKL	8	Unmodified	_GGFVGGKL_					0	0	0		tr|U7T8N3|U7T8N3_FUSNUVirulence-associatedproteinE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00110PE=4SV=1	tr|U7T8N3|U7T8N3_FUSNUVirulence-associatedproteinE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00110PE=4SV=1	tr|U7T8N3|U7T8N3_FUSNUVirulence-associatedproteinE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00110PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	367.30145263671875	2	367.713414	733.412274	0.29308	0.00010777	-0.090394	-3.3239E-05	0.20268	7.4529E-05	367.71356371413896	40.838	0.30375	40.838	40.559	40.863	0					7	5	2	0	0	0	0.972	1	14046	14046		0.69038	0.69038	1	555160			17045	30064	12323	12417	16688	16688					0.03490476497097461
GGFVGGKL	8	Unmodified	_GGFVGGKL_					0	0	0		tr|U7T8N3|U7T8N3_FUSNUVirulence-associatedproteinE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00110PE=4SV=1	tr|U7T8N3|U7T8N3_FUSNUVirulence-associatedproteinE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00110PE=4SV=1	tr|U7T8N3|U7T8N3_FUSNUVirulence-associatedproteinE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00110PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	368.11358642578125	2	367.713414	733.412274	0.21957	8.0739E-05	0.67431	0.00024795	0.89388	0.00032869	367.71359139523	63.071	0.45572	63.813	63.534	63.989	0.74263					11	8	2	0	0	0	0.7779	1	23936	23936		2.5775	0	1	1557500			17046	30064	12323	12417	16689	16689					0.03490476497097461
GGGCCPCCC	9	Unmodified	_GGGCCPCCC_					0	0	0			REV__ENST00000599649.5_1_19:52149845-52150035:-|nuORF	REV__ENST00000599649.5_1_19:52149845-52150035:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	801.5612182617188	1	802.180919	801.173642	-0.60939	-0.00048884	-0.12064	-9.6773E-05	-0.73003	-0.00058562	802.1819095861387	7.339	0.12327	7.339	7.2367	7.36	0					25	18	2	0	0	0	0.81896	1	1671	1671		0	0	1	111410	+		17047	26495	12324	12418	16690	16690					-0.23489777726524608
GGGCCPCCC	9	Unmodified	_GGGCCPCCC_					0	0	0			REV__ENST00000599649.5_1_19:52149845-52150035:-|nuORF	REV__ENST00000599649.5_1_19:52149845-52150035:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	801.5609130859375	1	802.180919	801.173642	-1.1751	-0.00094265	-0.80958	-0.00064943	-1.9847	-0.0015921	802.1818624493787	11.088	0.15766	11.587	11.485	11.643	0.49811					29	22	2	0	0	0	0.81896	1	3430	3430		0	0	1	135610	+		17048	26495	12324	12418	16691	16691					-0.23489777726524608
GGGGCPGG	8	Unmodified	_GGGGCPGG_					0	0	0		ENSG00000169991|ENST00000455833|IFFO2	ENSG00000169991|ENST00000455833|IFFO2	ENSG00000169991|ENST00000455833|IFFO2	MULTI-SECPEP	A375_MHC_IP_R1	1	560.7237548828125	1	561.208572	560.201295	-0.51659	-0.00028992	-4.0497	-0.0022727	-4.5663	-0.0025626	561.2082433738045	91.629	0.25349	91.629	91.401	91.655	0					6	4	2	0	0	0	0.972	1	33649	33649		0	0	1	1046500			17049	7461	12325	12419	16692	16692					-0.09639723816451351
GGGGGCCCG	9	Unmodified	_GGGGGCCCG_					0	0	0		ENST00000431489.5_1_2:62932928-62934072:+|nuORF	ENST00000431489.5_1_2:62932928-62934072:+|nuORF	ENST00000431489.5_1_2:62932928-62934072:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	669.7369384765625	1	670.174177	669.1669	-0.66636	-0.00044658	-1.7683	-0.001185	-2.4346	-0.0016316	670.1744599067214	90.752	2.1288	91.486	90.804	92.933	0.7345					67	41	2	0	0	0	0.81896	1	34440	34440		0	0	1	1941500			17050	11870	12326	12420	16693	16693					-0.1809163129122453
GGGGGCGF	8	Unmodified	_GGGGGCGF_					0	0	0		ENST00000520539.5_1_8:103424406-103424691:-|nuORF	ENST00000520539.5_1_8:103424406-103424691:-|nuORF	ENST00000520539.5_1_8:103424406-103424691:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	611.656005859375	1	611.224222	610.216945	-0.70694	-0.0004321	1.1389	0.00069611	0.43193	0.00026401	611.2257235242438	72.227	0.20108	72.961	72.82	73.021	0.73421					5	3	2	0	0	0	0.972	1	27422	27422		0.79363	0	1	762060			17051	12996	12327	12421	16694	16694					-0.1037543729941035
GGGGGDGF	8	Unmodified	_GGGGGDGF_					0	0	0		ENST00000322652.9_1_17:30264237-30264510:+|nuORF	ENST00000322652.9_1_17:30264237-30264510:+|nuORF	ENST00000322652.9_1_17:30264237-30264510:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	623.8300170898438	1	623.24198	622.234704	-0.71425	-0.00044515	-0.52394	-0.00032654	-1.2382	-0.00077169	623.2401434507337	90.489	0.30502	90.489	90.387	90.692	0					7	5	2	0	0	0	0.972	1	33243	33243		2.5775	0	1	1174800			17052	10707	12328	12422	16695	16695					-0.09152398772903325
GGGGGGCCH	9	Unmodified	_GGGGGGCCH_					0	0	0			REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	MSMS	A375_MHC_IP_R2	2	352.6146240234375	2	352.61559	703.216628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.735	1	71.47	70.97	71.97	0.73421								0	0	0	0.15486	1	26816	26816		0	0	1		+		17053	16937	12329	12423	16696	16696					-0.14685180290905464
GGGGRAAA	8	Unmodified	_GGGGRAAA_					0	0	0			REV__ENSG00000103489|ENST00000261381|XYLT1	REV__ENSG00000103489|ENST00000261381|XYLT1	MULTI-SECPEP	A375_MHC_IP_R1	1	616.0706787109375	1	616.316148	615.308872	-0.25843	-0.00015927	-2.5014	-0.0015417	-2.7599	-0.0017009	616.3139943250751	62.968	0.30974	62.968	62.863	63.173	0					8	5	2	0	0	0	0.972	1	22806	22806		2.8892	0	1	702280	+		17054	17279	12330	12424	16697	16697					-0.014170108907251233
GGGPVQLY	8	Unmodified	_GGGPVQLY_					0	0	0			REV__nc|ENSG00000080845|Q9Y2H0-1|DLGAP4	REV__nc|ENSG00000080845|Q9Y2H0-1|DLGAP4	MULTI-SECPEP	A375_MHC_IP_R1	1	396.1082458496094	2	395.708328	789.402104	-0.0018504	-7.3222E-07	-0.050624	-2.0032E-05	-0.052474	-2.0765E-05	395.70822317145473	102.77	0.71104	102.77	102.4	103.12	0					16	13	2	0	0	0	0.972	1	37804	37804		5.7604	0	1	865400	+		17055	16761	12331	12425	16698	16698					-0.0010213122814093367
GGGSCCAQ	8	Unmodified	_GGGSCCAQ_					0	0	0			REV__ENST00000498611.5_1_22:50657800-50659866:-|nuORF	REV__ENST00000498611.5_1_22:50657800-50659866:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	682.68359375	1	682.228321	681.221045	-0.72777	-0.00049651	-1.9236	-0.0013123	-2.6514	-0.0018088	682.2289785504407	81.679	1.4229	82.422	81.161	82.584	0.74294					39	27	2	0	0	0	0.77842	1	30549	30549		0.69038	0	1	1265200	+		17056	25478	12332	12426	16699	16699					-0.13231715868005267
GGGSNKGG	8	Unmodified	_GGGSNKGG_					0	0	0			REV__ENSG00000133124|ENST00000372129|IRS4	REV__ENSG00000133124|ENST00000372129|IRS4	MULTI-SECPEP	A375_MHC_IP_R2	2	633.5337524414062	1	633.295079	632.287802	-0.60657	-0.00038414	0.89615	0.00056752	0.28957	0.00018338	633.299273875785	142.63	1.8877	142.66	141.05	142.94	0.030731					58	36	2	0	0	0	0.972	1	55662	55662		0.69038	0	1	1024300	+		17057	18710	12333	12427	16700	16700					-0.043050209902389724
GGGYTIRNV	9	Unmodified	_GGGYTIRNV_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	A375_MHC_IP_R1	1	469.148193359375	2	468.748516	935.482479	-0.29297	-0.00013733	-0.19281	-9.0378E-05	-0.48578	-0.00022771	468.74840391531666	33.52	0.45737	33.52	33.241	33.698	0					20	8	4	0	0	0	0.0098183	2	10951	10951;10974		114.65	81.863	1	9876800			17058	3399	12334	12428	16701;16702	16701					0.012157300948956618
GGGYTIRNV	9	Unmodified	_GGGYTIRNV_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	A375_MHC_IP_R2	2	469.1479187011719	2	468.748516	935.482479	-0.68272	-0.00032002	0.14649	6.8667E-05	-0.53623	-0.00025136	468.7484983954427	32.817	0.45662	33.554	33.317	33.773	0.73691					20	8	3	0	0	0	0.0098183	2	11692	11692;11710		114.65	74.699	1	7824100			17059	3399	12334	12428	16703;16704	16703					0.012157300948956618
GGIATPPVYGQ	11	Unmodified	_GGIATPPVYGQ_					0	0	0		ENSG00000198612|ENST00000354371|COPS8;ENST00000470452.5_1_2:237994547-238002319:+|nuORF	ENSG00000198612|ENST00000354371|COPS8	ENSG00000198612|ENST00000354371|COPS8	MULTI-MSMS	A375_MHC_IP_R1	1	531.2051391601562	2	530.277106	1058.53966	-0.27889	-0.00014789	-0.094074	-4.9885E-05	-0.37296	-0.00019777	530.2770720736661	69.137	1.7235	69.137	68.26	69.983	0					91	33	3	0	0	0	0.67989	1	24945	24945		17.113	4.0704	1	243130000			17060	9291	12335	12429	16705	16705					0.012731525806202626
GGIATPPVYGQ	11	Unmodified	_GGIATPPVYGQ_					0	0	0		ENSG00000198612|ENST00000354371|COPS8;ENST00000470452.5_1_2:237994547-238002319:+|nuORF	ENSG00000198612|ENST00000354371|COPS8	ENSG00000198612|ENST00000354371|COPS8	MULTI-MSMS	A375_MHC_IP_R2	2	531.2102661132812	2	530.277106	1058.53966	-0.49791	-0.00026403	-0.073982	-3.9231E-05	-0.57189	-0.00030326	530.2770913912982	68.257	1.6255	68.993	68.154	69.779	0.73511					103	31	5	0	0	0	0.69231	1	25583	25583		16.149	3.6176	1	288870000			17061	9291	12335	12429	16706	16706					0.012731525806202626
GGLFGFGT	8	Unmodified	_GGLFGFGT_					0	0	0		nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948-4|NUP98	nc|ENSG00000110713|P52948-2|NUP98	nc|ENSG00000110713|P52948-2|NUP98	MSMS	A375_MHC_IP_R2	2	378.14593505859375	2	378.189771	754.36499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.77	1	114.48	113.98	114.98	0.70985								0	0	0	0.16876	1	42903	42903		2.3027	1.5091	1				17062	2942	12336	12430	16707	16707					-0.02201802773890904
GGLHLPLAL	9	Unmodified	_GGLHLPLAL_					0	0	0			REV__ENSG00000198768|ENST00000371149|APCDD1L	REV__ENSG00000198768|ENST00000371149|APCDD1L	MULTI-SECPEP	A375_MHC_IP_R2	2	446.1763610839844	2	445.776545	889.538538	-0.34712	-0.00015474	-0.36666	-0.00016345	-0.71378	-0.00031818	445.77653678563405	102.1	0.40497	102.86	102.62	103.02	0.76428					11	7	2	0	0	0	0.64653	1	38715	38715		14.582	0	1	947290	+		17063	22415	12337	12431	16708	16708					0.089349830023707
GGLHLPLAL	9	Unmodified	_GGLHLPLAL_					0	0	0			REV__ENSG00000198768|ENST00000371149|APCDD1L	REV__ENSG00000198768|ENST00000371149|APCDD1L	MULTI-MATCH	A375_MHC_IP_R1	1		2	445.776545	889.538538	-0.017788	-7.9295E-06	-0.88759	-0.00039567	-0.90538	-0.0004036	445.7764143933005	103.17	0.35739	103.17	102.96	103.32	0	0.15656	-0.00036937	NaN	14.582	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	900490	+		17064	22415	12337	12431							0.089349830023707
GGLQDYIHDWW	11	Unmodified	_GGLQDYIHDWW_					0	0	0		nc|ENSG00000133107|Q9UBN4-6|TRPC4;ENSG00000133107|ENST00000379705|TRPC4;nc|ENSG00000133107|Q9UBN4-5|TRPC4;ENST00000494529.1_1_13:38237855-38248478:-|nuORF;nc|ENSG00000133107|Q9UBN4-4|TRPC4;nc|ENSG00000133107|Q9UBN4-3|TRPC4;nc|ENSG00000133107|Q9UBN4-2|TRPC4	nc|ENSG00000133107|Q9UBN4-6|TRPC4	nc|ENSG00000133107|Q9UBN4-6|TRPC4	MSMS	A375_MHC_IP_R2	2	695.7144775390625	2	695.314751	1388.61495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.56	1	136.67	136.17	137.17	0.11134								0	0	0	0.16249	1	53635	53635		5.7319	0	1				17065	4487	12338	12432	16709	16709					-0.06381289958972047
GGLRAELL	8	Unmodified	_GGLRAELL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	A375_MHC_IP_R1	1	415.1510314941406	2	414.750527	827.486502	0.33278	0.00013802	0.078335	3.249E-05	0.41111	0.00017051	414.7504939313425	60.236	0.81495	60.236	59.854	60.669	0					39	15	4	0	0	0	0.11177	1	21631	21631		92.822	14.838	1	19361000			17066	4888	12339	12433	16710	16710					0.06585819588610775
GGLRAELL	8	Unmodified	_GGLRAELL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	414.750527	827.486502	-0.40874	-0.00016952	-0.13493	-5.5961E-05	-0.54366	-0.00022549	414.7504235929161	59.223	1.013	59.97	59.59	60.603	0.74714	-0.13292	-8.9413E-05	NaN	92.822	43	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28177000			17067	4888	12339	12433							0.06585819588610775
GGPAAPPPH	9	Unmodified	_GGPAAPPPH_					0	0	0			REV__nc|ENSG00000170390|Q8N568-2|DCLK2	REV__nc|ENSG00000170390|Q8N568-2|DCLK2	MULTI-MSMS	A375_MHC_IP_R2	2	800.4244384765625	1	800.404963	799.397687	-0.81611	-0.00065322	3.8942	0.0031169	3.0781	0.0024637	800.4073137403863	118.11	0.25307	118.72	118.59	118.85	0.60909					5	4	2	0	0	0	0.67372	1	44803	44803		9.3474	2.9933	1	3893100	+		17068	20988	12340	12434	16711	16711					-0.010035956510591859
GGPAGGYQ	8	Unmodified	_GGPAGGYQ_					0	0	0			REV__ENST00000489079.1_1_7:87840172-87856229:-|nuORF	REV__ENST00000489079.1_1_7:87840172-87856229:-|nuORF	MSMS	A375_MHC_IP_R2	2	353.55950927734375	2	353.661378	705.308203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.01	1	129.25	128.75	129.75	0.23946								0	0	0	0.16876	1	50690	50690		2.8892	0	1		+		17069	25365	12341	12435	16712	16712					-0.05623850330425739
GGPCGCGP	8	Unmodified	_GGPCGCGP_					0	0	0			REV__nc|ENSG00000197558|A2VEC9|SSPOP	REV__nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-SECPEP	A375_MHC_IP_R2	2	647.769775390625	1	647.227593	646.220316	-0.45204	-0.00029257	0.54533	0.00035295	0.093295	6.0383E-05	647.2303273118898	112.73	0.30756	113.45	113.32	113.63	0.72458					6	5	2	0	0	0	0.972	1	42544	42544		0.79363	0.79363	1	2132400	+		17070	27442	12342	12436	16713	16713					-0.11694510517054368
GGPFYWAP	8	Unmodified	_GGPFYWAP_					0	0	0			REV__ENST00000433578.5_3_3:184053856-184059926:+|nuORF	REV__ENST00000433578.5_3_3:184053856-184059926:+|nuORF	MSMS	A375_MHC_IP_R1	1	447.7769775390625	2	447.710871	893.407189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.706	1	24.706	24.206	25.206	0								0	0	0	0.16876	1	7075	7075		2.8892	0	1		+		17071	23726	12343	12437	16714	16714					-0.04377827365533449
GGPPEPHDPWP	11	Unmodified	_GGPPEPHDPWP_					0	0	0			REV__ENST00000478337.1_1_22:41980122-41985809:-|nuORF	REV__ENST00000478337.1_1_22:41980122-41985809:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	593.669189453125	2	593.269813	1184.52507	-0.8999	-0.00053388	-1.1248	-0.00066734	-2.0247	-0.0012012	593.2695213957596	21.197	0.81167	21.817	21.473	22.285	0.61932					33	15	4	0	0	0	0.73332	1	6602	6602		5.7319	0.43497	1	10287000	+		17072	25212	12344	12438	16715	16715					-0.0598091956751432
GGQQHLPQ	8	Unmodified	_GGQQHLPQ_					0	0	0		nc|ENSG00000132821|Q96N03-3|VSTM2L	nc|ENSG00000132821|Q96N03-3|VSTM2L	nc|ENSG00000132821|Q96N03-3|VSTM2L	MULTI-MSMS	A375_MHC_IP_R1	1	433.1202697753906	2	432.719759	863.424964	-0.16008	-6.927E-05	1.1957	0.00051742	1.0357	0.00044815	432.720312447172	28.364	0.65706	28.364	28.088	28.745	0					13	12	2	0	0	0	0.77603	1	8776	8776		9.3474	0	1	3077500			17073	14606	12345	12439	16716	16716					-0.012211121106702194
GGSDSNGSY	9	Unmodified	_GGSDSNGSY_					0	0	0		ENSG00000171456|ENST00000375687|ASXL1	ENSG00000171456|ENST00000375687|ASXL1	ENSG00000171456|ENST00000375687|ASXL1	MSMS	A375_MHC_IP_R1	1	422.151611328125	2	422.159397	842.30424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.89	1	102.89	102.39	103.39	0								0	0	0	0.15486	1	37810	37810		2.0598	0	1				17074	7602	12346	12440	16717	16717					-0.12321984614800385
GGSEDCVEIF	10	Unmodified	_GGSEDCVEIF_					0	0	0		ENSG00000133661|ENST00000372292|SFTPD	ENSG00000133661|ENST00000372292|SFTPD	ENSG00000133661|ENST00000372292|SFTPD	MULTI-MSMS	A375_MHC_IP_R1	1	528.7151489257812	2	528.221139	1054.42773	-0.5576	-0.00029454	1.588	0.00083881	1.0304	0.00054427	528.7236856546632	77.332	0.25249	77.332	77.133	77.386	0					7	4	2	0	0	0	0.70329	1	28179	28179		10.824	0.64053	1	564750			17075	4522	12347	12441	16718	16718					-0.09731069558688432
GGSEETLPQDH	11	Unmodified	_GGSEETLPQDH_					0	0	0		ENSG00000127870|ENST00000381588|RNF6;ENST00000476347.1_1_13:26793531-26793786:-|nuORF;nc|ENSG00000127870|Q9Y252-3|RNF6;ENST00000468480.5_1_13:26706571-26793786:-|nuORF	ENSG00000127870|ENST00000381588|RNF6	ENSG00000127870|ENST00000381588|RNF6	MULTI-MSMS	A375_MHC_IP_R1	1	585.6868896484375	2	585.257099	1168.49965	-0.32751	-0.00019167	-0.080106	-4.6883E-05	-0.40761	-0.00023856	585.2569116583074	27.457	0.35347	27.457	27.28	27.634	0					12	6	2	0	0	0	0.47047	1	8381	8381		33.445	0	1	2654200			17076	4106	12348	12442	16719	16719					-0.07786438880611968
GGSGNDNN	8	Unmodified	_GGSGNDNN_					0	0	0		ENSG00000137504|ENST00000527447|CREBZF	ENSG00000137504|ENST00000527447|CREBZF	ENSG00000137504|ENST00000527447|CREBZF	MSMS	A375_MHC_IP_R2	2	367.61712646484375	2	367.638631	733.26271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.743	1	24.373	23.873	24.873	0.63014								0	0	0	0.16876	1	7690	7690		0	0	1				17077	4891	12349	12443	16720	16720					-0.1145912058346994
GGSRIWFQLY	10	Unmodified	_GGSRIWFQLY_					0	0	0			REV__ENSG00000176208|ENST00000321990|ATAD5	REV__ENSG00000176208|ENST00000321990|ATAD5	MULTI-MSMS	A375_MHC_IP_R2	2	409.9398498535156	3	409.548741	1225.62439	0.073764	3.021E-05	1.8486	0.00075708	1.9223	0.00078729	409.54938546464786	42.231	0.51025	43.004	42.809	43.319	0.7724					14	9	3	0	0	0	0.57505	1	15659	15659		14.957	5.4132	1	1099800	+		17078	21394	12350	12444	16721	16721					0.0206052311723397
GGSSFGCCSSV	11	Unmodified	_GGSSFGCCSSV_					0	0	0			REV__LCE5A|p.S54F|1|0.07|ENSG00000186207|chr1:152511695-152511695|C/T|missense_variant	REV__LCE5A|p.S54F|1|0.07|ENSG00000186207|chr1:152511695-152511695|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	495.6607666015625	2	495.68641	989.358266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.782	1	63.525	63.025	64.025	0.74263								0	0	0	0.16179	1	23800	23800		9.3831	0.78985	1		+		17079	26922	12351	12445	16722	16722					-0.1368385177908067
GGSVDILPLY	10	Unmodified	_GGSVDILPLY_					0	0	0		ENSG00000132694|ENST00000368194|ARHGEF11	ENSG00000132694|ENST00000368194|ARHGEF11	ENSG00000132694|ENST00000368194|ARHGEF11	MULTI-MSMS	A375_MHC_IP_R1	1	517.2300415039062	2	517.281857	1032.54916	-0.49247	-0.00025475	0.22842	0.00011816	-0.26405	-0.00013659	517.281960325155	103.16	0.7136	103.16	102.86	103.57	0					27	13	3	0	0	0	0.60556	1	37820	37820		20.454	1.1966	1	5833400			17080	4442	12352	12446	16723	16723					0.03418920866147346
GGTNYYIESL	10	Unmodified	_GGTNYYIESL_					0	0	0		nc|ENSG00000043514|Q9H3H1-4|TRIT1;ENSG00000043514|ENST00000316891|TRIT1;ENST00000486825.6_1_1:40315918-40341739:-|nuORF;ENST00000462243.2_1_1:40318401-40323020:-|nuORF	nc|ENSG00000043514|Q9H3H1-4|TRIT1	nc|ENSG00000043514|Q9H3H1-4|TRIT1	MULTI-MSMS	A375_MHC_IP_R2	2	559.16455078125	2	558.764029	1115.5135	-0.61291	-0.00034247	0.54535	0.00030472	-0.067562	-3.7751E-05	558.7647881851101	84.325	0.81622	85.063	84.558	85.374	0.73838					28	15	3	0	0	0	0.69833	1	32055	32055		13.042	1.4022	1	2637100			17081	1181	12353	12447	16724	16724					-0.03963161381534519
GGTSFKLVYI	10	Unmodified	_GGTSFKLVYI_					0	0	0			REV__ENSG00000091704|ENST00000011292|CPA1	REV__ENSG00000091704|ENST00000011292|CPA1	MULTI-MSMS	A375_MHC_IP_R1	1	362.6058044433594	3	362.206092	1083.59645	0.16276	5.8953E-05	-0.51814	-0.00018767	-0.35538	-0.00012872	362.20598302193696	55.208	0.86494	55.208	54.822	55.687	0					26	16	3	0	0	0	0.72112	1	19764	19764		2.8433	0.10809	1	2058900	+		17082	16956	12354	12448	16725	16725					0.05799200137153093
GGTSFKLVYI	10	Unmodified	_GGTSFKLVYI_					0	0	0			REV__ENSG00000091704|ENST00000011292|CPA1	REV__ENSG00000091704|ENST00000011292|CPA1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	362.206092	1083.59645	0.16276	5.8953E-05	-0.51814	-0.00018767	-0.35538	-0.00012872	362.20598302193696	55.208	0.86494	55.208	54.822	55.687	0	0.11836	-0.0003157	NaN	2.8433	26	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2058900	+		17083	16956	12354	12448							0.05799200137153093
GGTSFKLVYI	10	Unmodified	_GGTSFKLVYI_					0	0	0			REV__ENSG00000091704|ENST00000011292|CPA1	REV__ENSG00000091704|ENST00000011292|CPA1	MULTI-MATCH	A375_MHC_IP_R2	2		3	362.206092	1083.59645	-0.42694	-0.00015464	0.064378	2.3318E-05	-0.36256	-0.00013132	362.2060278717339	54.22	0.45597	54.971	54.763	55.219	0.75075	-0.11836	0.00031727	NaN	2.8433	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1893200	+		17084	16956	12354	12448							0.05799200137153093
GGVLFRDW	8	Unmodified	_GGVLFRDW_					0	0	0			REV__ENSG00000177427|ENST00000323019|MIEF2	REV__ENSG00000177427|ENST00000323019|MIEF2	MULTI-SECPEP	A375_MHC_IP_R1	1	474.68731689453125	2	475.248152	948.481751	-0.48663	-0.00023127	0.11886	5.6489E-05	-0.36777	-0.00017478	475.24806034576056	33.75	1.1643	33.75	33.241	34.405	0					35	22	2	0	0	0	0.96266	1	11119	11119		11.64	5.4345	1	1509300	+		17085	21456	12355	12449	16726	16726					0.005449354458392008
GGVLRHGQ	8	Unmodified	_GGVLRHGQ_					0	0	0			REV__ENSG00000168056|ENST00000301873|LTBP3	REV__ENSG00000168056|ENST00000301873|LTBP3	MULTI-MSMS	A375_MHC_IP_R1	1	412.6302185058594	2	412.230294	822.446034	0.3991	0.00016452	-0.035781	-1.475E-05	0.36332	0.00014977	412.2302209076744	109.21	2.6433	109.21	108.1	110.75	0					120	51	3	0	0	0	0.7779	1	40145	40145		2.5775	0	1	8592800	+		17086	20823	12356	12450	16727	16727					0.02770897988852994
GGVLRHGQ	8	Unmodified	_GGVLRHGQ_					0	0	0			REV__ENSG00000168056|ENST00000301873|LTBP3	REV__ENSG00000168056|ENST00000301873|LTBP3	MULTI-MSMS	A375_MHC_IP_R2	2	412.63006591796875	2	412.230294	822.446034	0.05977	2.4639E-05	0.089698	3.6976E-05	0.14947	6.1615E-05	412.2302615784873	108.61	2.8049	109.36	108.29	111.1	0.74683					139	54	4	0	0	0	0.7779	1	41039	41039		2.5775	0	1	9664800	+		17087	20823	12356	12450	16728	16728					0.02770897988852994
GGVSLFSLEP	10	Unmodified	_GGVSLFSLEP_					0	0	0			REV__nc|ENSG00000005379|O95153-2|TSPOAP1	REV__nc|ENSG00000005379|O95153-2|TSPOAP1	MULTI-MSMS	A375_MHC_IP_R1	1	504.6829528808594	2	503.266207	1004.51786	-0.53811	-0.00027081	0.089229	4.4906E-05	-0.44888	-0.0002259	503.26619636412204	94.725	0.81704	94.725	94.343	95.16	0					43	15	4	0	0	0	0.69306	1	34745	34745		13.906	1.3745	1	12285000	+		17088	16121	12357	12451	16729	16729					0.015783478320372524
GGYGCADA	8	Unmodified	_GGYGCADA_					0	0	0		MER115_dup841|chr5:33942390-33942823:+|1.2244628209757864|0.0223229591561987|5.78|439.0|8|2|sense	MER115_dup841|chr5:33942390-33942823:+|1.2244628209757864|0.0223229591561987|5.78|439.0|8|2|sense	MER115_dup841|chr5:33942390-33942823:+|1.2244628209757864|0.0223229591561987|5.78|439.0|8|2|sense	MULTI-SECPEP	A375_MHC_IP_R2	2	713.6543579101562	1	713.255916	712.248639	-0.5595	-0.00039906	-1.3758	-0.00098126	-1.9352	-0.0013803	713.2548229974756	143.49	0.14749	143.51	143.44	143.59	0.024414					4	2	2	0	0	0	0.972	1	56101	56101		0	0	1	746450			17089	14373	12358	12452	16730	16730					-0.11899489336133229
GGYSISFL	8	Unmodified	_GGYSISFL_					0	0	0		ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	MULTI-MSMS	A375_MHC_IP_R1	1	843.288330078125	1	843.424696	842.417419	-0.011146	-9.4006E-06	-0.72515	-0.00061161	-0.73629	-0.00062101	843.4241234419391	116.34	0.81453	116.34	115.78	116.6	0					19	15	2	0	0	0	0.17015	1	42587	42587		70.716	23.795	1	5936300			17090	5012	12359	12453	16731	16731					-0.0100926443096796
GGYTIRNV	8	Unmodified	_GGYTIRNV_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	A375_MHC_IP_R1	1	440.6376647949219	2	440.237784	878.461016	-0.040499	-1.7829E-05	0.20873	9.1892E-05	0.16823	7.4063E-05	440.23782304862164	33.673	0.45389	33.673	33.445	33.898	0					13	8	2	0	0	0	0.1677	2	11048	10990;11048		74.929	29.293	1	4195400			17091	3399	12360	12454	16732;16733	16733					0.016923450661806783
GGYTIRNV	8	Unmodified	_GGYTIRNV_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	A375_MHC_IP_R2	2	440.6377258300781	2	440.237784	878.461016	-0.4108	-0.00018085	0.021279	9.3679E-06	-0.38952	-0.00017148	440.2377150160547	32.909	0.35726	33.646	33.518	33.876	0.73692					12	6	2	0	0	0	0.15393	2	11777	11715;11777		85.272	38.351	1	4157500			17092	3399	12360	12454	16734;16735	16735					0.016923450661806783
GHCRFWTL	8	Unmodified	_GHCRFWTL_					0	0	0			REV__ENST00000486209.5_1_22:21832732-21838406:-|nuORF	REV__ENST00000486209.5_1_22:21832732-21838406:-|nuORF	MSMS	A375_MHC_IP_R1	1	510.2040100097656	2	510.247629	1018.48071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.6	1	114.6	114.1	115.1	0								0	0	0	0.16876	1	42027	42027		4.756	0.42677	1		+		17093	25319	12361	12455	16736	16736					-0.027796021946869587
GHFAGMFYL	9	Unmodified	_GHFAGMFYL_					0	0	0			REV__ABAT|p.S212Y|1|0.49|ENSG00000183044|chr16:8768224-8768224|C/A|missense_variant	REV__ABAT|p.S212Y|1|0.49|ENSG00000183044|chr16:8768224-8768224|C/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	522.1908569335938	2	521.744388	1041.47422	-0.50181	-0.00026182	1.5259	0.0007961	1.024	0.00053429	521.7455123312536	95.698	1.4229	96.448	96.041	97.464	0.75044					31	27	2	0	0	0	0.77244	1	36598	36598		5.2307	0.47466	1	2486500	+		17094	15280	12362	12456	16737	16737					-0.04485540146083622
GHGGEGGG	8	Unmodified	_GHGGEGGG_					0	0	0		ENST00000367201.7_1_1:204118971-204121014:-|nuORF	ENST00000367201.7_1_1:204118971-204121014:-|nuORF	ENST00000367201.7_1_1:204118971-204121014:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	626.7610473632812	1	627.248128	626.240852	-0.78468	-0.00049219	1.7387	0.0010906	0.95398	0.00059838	627.2529181756387	131.97	0.45569	132.15	132.05	132.51	0.18953					10	8	2	0	0	0	0.972	1	51947	51947		0	0	1	1139700			17095	11081	12363	12457	16738	16738					-0.08721880541361315
GHGKGFAG	8	Unmodified	_GHGKGFAG_					0	0	0		ENST00000424404.1_1_7:121947107-121947290:+|nuORF	ENST00000424404.1_1_7:121947107-121947290:+|nuORF	ENST00000424404.1_1_7:121947107-121947290:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	730.7613525390625	1	730.363099	729.355822	-0.39008	-0.0002849	-0.12924	-9.4394E-05	-0.51933	-0.0003793	730.3632935657499	82.173	0.81181	82.173	81.911	82.722	0					22	15	2	0	0	0	0.972	1	30049	30049		0.79363	0	1	2353300			17096	11773	12364	12458	16739	16739					-0.01968151339576707
GHHIWKLQS	9	Unmodified	_GHHIWKLQS_					0	0	0		ENST00000492382.5_1_3:122278518-122283072:-|nuORF	ENST00000492382.5_1_3:122278518-122283072:-|nuORF	ENST00000492382.5_1_3:122278518-122283072:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	368.6356201171875	3	369.201564	1104.58286	-0.18291	-6.7532E-05	-1.0336	-0.00038159	-1.2165	-0.00044912	369.2011575829624	34.001	0.40421	34.753	34.5	34.904	0.75225					19	7	4	0	0	0	0.53748	1	12205	12205		17.443	7.2921	1	7909800			17097	12672	12365	12459	16740	16740					0.03475387148569098
GHHLHLDQF	9	Unmodified	_GHHLHLDQF_					0	0	0			REV__ENST00000481568.2_1_10:73520406-73521697:-|nuORF	REV__ENST00000481568.2_1_10:73520406-73521697:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	552.6716918945312	2	552.27269	1102.53083	-0.78294	-0.0004324	-0.53945	-0.00029792	-1.3224	-0.00073032	552.2722843968544	66.726	0.61414	66.726	66.529	67.143	0					18	11	2	0	0	0	0.62767	1	24166	24166		23.148	5.0021	1	4393200	+		17098	17495	12366	12460	16741	16741					-0.016337762652028687
GHLLLTAQQLP	11	Unmodified	_GHLLLTAQQLP_					0	0	0		ENST00000592347.5_2_19:28957524-28957629:-|nuORF	ENST00000592347.5_2_19:28957524-28957629:-|nuORF	ENST00000592347.5_2_19:28957524-28957629:-|nuORF	MSMS	A375_MHC_IP_R2	2	595.9749145507812	2	595.84823	1189.68191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.655	1	97.41	96.91	97.91	0.75586								0	0	0	0.16312	1	36693	36693		2.4985	0.19575	1				17099	13813	12367	12461	16742	16742					0.09465365322785146
GHLLSIDDL	9	Unmodified	_GHLLSIDDL_					0	0	0		nc|ENSG00000150510|Q86V42-2|FAM124A;ENSG00000150510|ENST00000322475|FAM124A	nc|ENSG00000150510|Q86V42-2|FAM124A	nc|ENSG00000150510|Q86V42-2|FAM124A	MULTI-MSMS	A375_MHC_IP_R2	2	491.6898498535156	2	491.763832	981.513111	-0.52665	-0.00025899	-0.41728	-0.0002052	-0.94393	-0.00046419	491.7635773633238	77.086	1.3197	77.829	77.252	78.572	0.74293					70	25	4	0	0	0	0.40079	1	29528	29528		24.674	0.65332	1	15723000			17100	5847	12368	12462	16743	16743					0.02161463689287757
GHLLVLAALVL	11	Unmodified	_GHLLVLAALVL_					0	0	0			REV__SLC18A2|p.D262H|1|0.5|ENSG00000165646|chr10:117255360-117255360|G/C|missense_variant	REV__SLC18A2|p.D262H|1|0.5|ENSG00000165646|chr10:117255360-117255360|G/C|missense_variant	MSMS	A375_MHC_IP_R1	1	373.63665771484375	3	373.581382	1117.72232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.643	1	38.643	38.143	39.143	0								0	0	0	0.16332	1	13129	13129		1.4551	0.24029	1		+		17101	27976	12369	12463	16744	16744					0.1681633171319845
GHLRQRPFTA	10	Unmodified	_GHLRQRPFTA_					0	0	0			REV__ENST00000293894.3_1_16:1035736-1036009:+|nuORF	REV__ENST00000293894.3_1_16:1035736-1036009:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	395.28778076171875	3	394.887868	1181.64177	-0.13521	-5.3394E-05	0.17682	6.9825E-05	0.04161	1.6431E-05	394.8877372482606	27.271	0.65405	27.271	26.828	27.482	0					30	12	3	0	0	0	0.70442	1	8214	8214		10.315	2.8382	1	6031600	+		17102	23374	12370	12464	16745	16745					0.05821863442884023
GHSGQDPD	8	Unmodified	_GHSGQDPD_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MSMS	A375_MHC_IP_R2	2	406.60308837890625	2	406.662106	811.30966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.763	1	24.393	23.893	24.893	0.63014								0	0	0	0.16876	1	7700	7700		2.5775	0	1		+		17103	20671	12371	12465	16746	16746					-0.10354261032330214
GHTGTAGK	8	Unmodified	_GHTGTAGK_					0	0	0		chr8:107336271-107336384|286|14.84|0.38|5.3|-|ENST00000520734|ANGPT1,ANGPT1;nc|ENSG00000154188|Q15389-2|ANGPT1;ENSG00000154188|ENST00000517746|ANGPT1	chr8:107336271-107336384|286|14.84|0.38|5.3|-|ENST00000520734|ANGPT1,ANGPT1	chr8:107336271-107336384|286|14.84|0.38|5.3|-|ENST00000520734|ANGPT1,ANGPT1	MULTI-SECPEP	A375_MHC_IP_R2	2	728.1006469726562	1	728.368578	727.361301	-0.65178	-0.00047474	-2.6032	-0.0018961	-3.255	-0.0023709	728.3690759135839	85.503	0.86782	86.239	85.523	86.391	0.73602					18	16	2	0	0	0	0.972	1	32365	32365		0.69038	0	1	1965000			17104	503	12372	12466	16747	16747					-0.013284725477660686
GHTWFIHSL	9	Unmodified	_GHTWFIHSL_					0	0	0			REV__ENSG00000162227|ENST00000294168|TAF6L	REV__ENSG00000162227|ENST00000294168|TAF6L	MULTI-SECPEP	A375_MHC_IP_R1	1	548.6871948242188	2	549.279983	1096.54541	-0.41777	-0.00022947	0.3762	0.00020664	-0.041569	-2.2833E-05	549.2802253477477	82.596	0.70704	82.596	82.368	83.075	0					20	13	2	0	0	0	0.3607	1	30205	30205		26.884	1.4843	1	2049200	+		17105	20240	12373	12467	16748	16748					0.0010029588295310532
GHVGRGQL	8	Unmodified	_GHVGRGQL_					0	0	0			REV__ENST00000441339.2_11:69061685-69061946:+|nuORF	REV__ENST00000441339.2_11:69061685-69061946:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	823.6390991210938	1	823.453311	822.446034	-0.76578	-0.00063059	0.25669	0.00021137	-0.50909	-0.00041921	823.4533289103038	103.87	2.7957	104.63	103.43	106.23	0.76428					88	54	2	0	0	0	0.7779	1	39360	39360		2.5775	0	1	4801800	+		17106	24809	12374	12468	16749	16749					0.02770897988852994
GHWEEVVTL	9	Unmodified	_GHWEEVVTL_					0	0	0		nc|ENSG00000107731|Q8IZJ1-2|UNC5B;ENSG00000107731|ENST00000335350|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	MULTI-SECPEP	A375_MHC_IP_R1	1	535.6672973632812	2	535.269281	1068.52401	-0.6811	-0.00036457	-1.9583	-0.0010482	-2.6394	-0.0014128	535.268325058171	60.112	0.81425	60.112	59.548	60.363	0					38	15	3	0	0	0	0.3607	1	21666	21666		34.102	14.74	1	3105200			17107	2752	12375	12469	16750	16750					-0.007511339364327796
GHWEEVVTL	9	Unmodified	_GHWEEVVTL_					0	0	0		nc|ENSG00000107731|Q8IZJ1-2|UNC5B;ENSG00000107731|ENST00000335350|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	MULTI-MSMS	A375_MHC_IP_R2	2	535.6658325195312	2	535.269281	1068.52401	-1.2219	-0.00065405	-2.0092	-0.0010754	-3.2311	-0.0017295	535.2680665139403	56.774	0.91572	57.524	56.847	57.763	0.75014					39	17	3	0	0	0	0.32899	1	21394	21394		28.487	0.85804	1	4374800			17108	2752	12375	12469	16751	16751					-0.007511339364327796
GHWEEVVTL	9	Unmodified	_GHWEEVVTL_					0	0	0		nc|ENSG00000107731|Q8IZJ1-2|UNC5B;ENSG00000107731|ENST00000335350|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	MULTI-SECPEP	A375_MHC_IP_R2	2	535.6671142578125	2	535.269281	1068.52401	-1.2217	-0.00065395	-2.0436	-0.0010939	-3.2653	-0.0017478	535.2682551103909	59.224	0.80956	59.971	59.54	60.349	0.74714					25	15	2	0	0	0	0.47368	1	22478	22478		34.102	10.082	1	4595900			17109	2752	12375	12469	16752	16752					-0.007511339364327796
GHYVQQAKQRV	11	Unmodified	_GHYVQQAKQRV_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MSMS	A375_MHC_IP_R1	1	657.256103515625	2	657.357285	1312.70002	-0.52773	-0.00034691	0.74286	0.00048832	0.21513	0.00014142	657.3577709386315	89.768	0.60693	89.768	89.526	90.133	0					18	11	2	0	0	0	0.7362	1	33090	33090		2.9952	0	1	3490400			17110	14949	12376	12470	16753	16753					0.056175002974896415
GIAADRGYFI	10	Unmodified	_GIAADRGYFI_					0	0	0		nc|ENSG00000111275|P05091-2|ALDH2;ENST00000548536.1_1_12:112213467-112247376:+|nuORF;ENSG00000111275|ENST00000261733|ALDH2	nc|ENSG00000111275|P05091-2|ALDH2	nc|ENSG00000111275|P05091-2|ALDH2	MULTI-SECPEP	A375_MHC_IP_R2	2	541.1109619140625	2	541.785099	1081.55564	-0.7203	-0.00039025	0.36652	0.00019858	-0.35378	-0.00019167	541.7848130222856	68.346	0.60904	69.081	68.714	69.323	0.73511					22	11	3	0	0	0	0.83086	1	25798	25798		15.847	0	1	2013000			17111	2981	12377	12471	16754	16754					0.01812858817538654
GIAFSSGDRW	10	Unmodified	_GIAFSSGDRW_					0	0	0		nc|ENSG00000197446|P24903-2|CYP2F1;ENSG00000197446|ENST00000331105|CYP2F1	nc|ENSG00000197446|P24903-2|CYP2F1	nc|ENSG00000197446|P24903-2|CYP2F1	MULTI-MSMS	A375_MHC_IP_R2	2	548.68701171875	2	548.26453	1094.51451	-0.70213	-0.00038495	0.095613	5.2421E-05	-0.60651	-0.00033253	548.2645699807183	42.927	0.76027	43.699	43.369	44.13	0.7724					46	14	4	0	0	0	0.58828	1	16087	16087		21.747	0	1	28222000			17112	9160	12378	12472	16755	16755					-0.028969022219598628
GIAGSLKTV	9	Unmodified	_GIAGSLKTV_					0	0	0		ENSG00000008083|ENST00000341776|JARID2	ENSG00000008083|ENST00000341776|JARID2	ENSG00000008083|ENST00000341776|JARID2	MULTI-MSMS	A375_MHC_IP_R1	1	423.6579284667969	2	423.258185	844.501818	-0.38657	-0.00016362	0.39966	0.00016916	0.013085	5.5382E-06	423.25832489059775	41.579	0.46049	41.579	41.368	41.828	0					18	8	3	0	0	0	0.012843	1	14375	14375		92.653	24.573	1	5185600			17113	950	12379	12473	16756	16756					0.07334686385809164
GIAGSLKTV	9	Unmodified	_GIAGSLKTV_					0	0	0		ENSG00000008083|ENST00000341776|JARID2	ENSG00000008083|ENST00000341776|JARID2	ENSG00000008083|ENST00000341776|JARID2	MULTI-MSMS	A375_MHC_IP_R2	2	423.6583251953125	2	423.258185	844.501818	-0.30494	-0.00012907	0.3738	0.00015821	0.068861	2.9146E-05	423.2582929067089	40.724	0.509	41.498	41.234	41.743	0.77451					15	9	2	0	0	0	0.018261	1	15078	15078		85.642	23.069	1	6238800			17114	950	12379	12473	16757	16757					0.07334686385809164
GIAGSLSPAV	10	Unmodified	_GIAGSLSPAV_					0	0	0			REV__MTMR14|p.P625L|1|0.08|ENSG00000163719|chr3:9701894-9701894|C/T|missense_variant	REV__MTMR14|p.P625L|1|0.08|ENSG00000163719|chr3:9701894-9701894|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	436.64776611328125	2	436.247818	870.481082	-0.17373	-7.5789E-05	0.0034226	1.4931E-06	-0.17031	-7.4296E-05	436.2477700041117	64.267	0.55684	64.267	63.939	64.495	0					28	10	3	0	0	0	0.12876	1	23186	23186		57.471	13.064	1	4664000	+		17115	27044	12380	12474	16758	16758					0.04066096006135922
GIAGTGLYSLW	11	Unmodified	_GIAGTGLYSLW_					0	0	0		ENST00000371614.1_1_1:52498727-52498787:-|nuORF	ENST00000371614.1_1_1:52498727-52498787:-|nuORF	ENST00000371614.1_1_1:52498727-52498787:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	569.2241821289062	2	569.300581	1136.58661	-0.47991	-0.00027321	0.58137	0.00033098	0.10147	5.7764E-05	569.3010551178636	52.872	0.40677	52.872	52.49	52.897	0					11	7	2	0	0	0	0.72119	1	18723	18723		13.906	0	1	3657500			17116	11180	12381	12475	16759	16759					0.02378012131748619
GIALMLSWL	9	Unmodified	_GIALMLSWL_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	A375_MHC_IP_R1	1	502.1841735839844	2	502.285889	1002.55722	-0.37365	-0.00018768	1.1147	0.00055989	0.74104	0.00037221	502.28646198814135	73.295	0.40598	73.295	73.082	73.488	0					14	7	3	0	0	0	0.64653	1	26679	26679		9.3474	0	1	1529800	+		17117	21249	12382	12476	16760	16760					0.05604776581913029
GIAVYICKV	9	Unmodified	_GIAVYICKV_					0	0	0			REV__tr|U7SNB8|U7SNB8_FUSNUATPsynthasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1	REV__tr|U7SNB8|U7SNB8_FUSNUATPsynthasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	483.47198486328125	2	483.278063	964.541574	-0.52086	-0.00025172	3.2751	0.0015828	2.7542	0.001331	483.27953763565375	42.385	0.56103	43.158	42.86	43.421	0.7724					13	10	2	0	0	0	0.62767	1	15851	15851		11.64	6.8843	1	688750	+		17118	28321	12383	12477	16761	16761					0.057884900648673465
GICAMCGK	8	Unmodified	_GICAMCGK_					0	0	0		ENSG00000119878|ENST00000238892|CRIPT;ENST00000486447.1_1_2:46844062-46851363:+|nuORF	ENSG00000119878|ENST00000238892|CRIPT	ENSG00000119878|ENST00000238892|CRIPT	MULTI-SECPEP	A375_MHC_IP_R2	2	781.9365844726562	1	782.335763	781.328486	-0.94846	-0.00074201	0.59	0.00046158	-0.35846	-0.00028044	782.3353000469615	125.02	0.25314	125.35	125.2	125.45	0.32969					6	4	2	0	0	0	0.972	1	48536	48536		5.7604	0.52976	1	17186000			17119	3628	12384	12478	16762	16762					-0.07092462258117394
GIDILFRLKLY	11	Unmodified	_GIDILFRLKLY_					0	0	0			REV__ENST00000549090.1_1_12:56712215-56713271:-|nuORF	REV__ENST00000549090.1_1_12:56712215-56713271:-|nuORF	MSMS	A375_MHC_IP_R2	2	675.7462768554688	2	675.91083	1349.80711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.092	1	88.824	88.324	89.324	0.7318								0	0	0	0.1623	1	33519	33519		6.7232	0.09279	1		+		17120	18856	12385	12479	16763	16763					0.14619657459184054
GIDSSSPEV	9	Unmodified	_GIDSSSPEV_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	446.1084899902344	2	445.708722	889.402892	-0.20646	-9.2021E-05	0.074814	3.3345E-05	-0.13165	-5.8675E-05	445.7087055225388	39.567	0.76083	39.567	39.238	39.999	0					32	14	3	0	0	0	0.030624	1	13506	13506		88.904	46.809	1	18005000			17121	7414	12386	12480	16764	16764					-0.04623381369754043
GIDSSSPEV	9	Unmodified	_GIDSSSPEV_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	446.1083068847656	2	445.708722	889.402892	-0.63197	-0.00028168	0.13116	5.8461E-05	-0.50081	-0.00022321	445.7087282333739	38.871	0.6657	39.645	39.351	40.016	0.77451					30	12	3	0	0	0	0.030624	1	14290	14290		100.37	49.516	1	14152000			17122	7414	12386	12480	16765	16765					-0.04623381369754043
GIDSTRKDP	9	Unmodified	_GIDSTRKDP_					0	0	0		ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	MULTI-SECPEP	A375_MHC_IP_R1	1	494.623291015625	2	494.756538	987.498523	-0.31634	-0.00015651	-0.73454	-0.00036342	-1.0509	-0.00051993	494.7566278661315	33.847	0.3526	33.847	33.597	33.95	0					11	6	2	0	0	0	0.69507	1	11091	11091		19.257	10.664	1	1591700			17123	9301	12387	12481	16766	16766					0.00427391541131783
GIDTAETLN	9	Unmodified	_GIDTAETLN_					0	0	0			REV__PTPN12|p.P754L|1|0.27|ENSG00000127947|chr7:77638711-77638711|C/T|missense_variant	REV__PTPN12|p.P754L|1|0.27|ENSG00000127947|chr7:77638711-77638711|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	467.1503601074219	2	467.229822	932.445091	-0.23878	-0.00011157	0.89671	0.00041897	0.65792	0.0003074	467.23029359615236	100.82	0.40425	100.82	100.58	100.99	0					10	7	2	0	0	0	0.1277	1	37113	37113		46.021	13.235	1	681400	+		17124	27858	12388	12482	16767	16767					-0.02383405961381868
GIDTAETLN	9	Unmodified	_GIDTAETLN_					0	0	0			REV__PTPN12|p.P754L|1|0.27|ENSG00000127947|chr7:77638711-77638711|C/T|missense_variant	REV__PTPN12|p.P754L|1|0.27|ENSG00000127947|chr7:77638711-77638711|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	467.229822	932.445091	-0.38878	-0.00018165	1.5088	0.00070497	1.12	0.00052332	467.230446416301	99.888	0.40482	100.65	100.42	100.83	0.76278	-0.086432	0.0001886	NaN	46.021	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	869150	+		17125	27858	12388	12482							-0.02383405961381868
GIEEMDTYY	9	Unmodified	_GIEEMDTYY_					0	0	0			REV__ENSG00000155629|ENST00000339364|PIK3AP1	REV__ENSG00000155629|ENST00000339364|PIK3AP1	MULTI-SECPEP	A375_MHC_IP_R2	2	560.5369873046875	2	560.728797	1119.44304	-0.52914	-0.0002967	-2.3546	-0.0013203	-2.8837	-0.001617	560.726602783979	90.773	0.30412	91.508	91.362	91.666	0.7345					6	5	2	0	0	0	0.75466	1	34573	34573		7.9102	0	1	749590	+		17126	19930	12389	12483	16768	16768					-0.11190202761508772
GIEFGSYGW	9	Unmodified	_GIEFGSYGW_					0	0	0			REV__tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1	REV__tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1	MSMS	A375_MHC_IP_R2	2	508.1839904785156	2	508.229625	1014.4447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.092	1	93.831	93.331	94.331	0.73902								0	0	0	0.15486	1	35394	35394		13.508	1.8676	1		+		17127	28581	12390	12484	16769	16769					-0.06194780890564289
GIFCFAPCV	9	Unmodified	_GIFCFAPCV_					0	0	0			REV__TRIM46|p.G734S|1|0.36|ENSG00000163462|chr1:155184110-155184110|G/A|missense_variant	REV__TRIM46|p.G734S|1|0.36|ENSG00000163462|chr1:155184110-155184110|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	479.1793212890625	2	478.722067	955.429581	-0.54555	-0.00026117	0.13646	6.5328E-05	-0.40909	-0.00019584	478.72207660807436	73.353	2.2387	74.088	73.226	75.465	0.73541					68	43	2	0	0	0	0.60623	1	27850	27850		14.582	3.4672	1	947370	+		17128	20364	12391	12485	16770	16770					-0.04991687283779811
GIFELLRII	9	Unmodified	_GIFELLRII_					0	0	0			REV__ENST00000505732.5_1_9:15186859-15307321:-|nuORF	REV__ENST00000505732.5_1_9:15186859-15307321:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	536.5647583007812	2	537.33951	1072.66447	-0.61724	-0.00033167	-1.8385	-0.0009879	-2.4557	-0.0013196	537.8421411240271	99.636	0.25313	100.4	100.27	100.52	0.76278					6	4	2	0	0	0	0.77834	1	37748	37748		0.52476	0.12405	1	1216300	+		17129	25539	12392	12486	16771	16771					0.13104069787800654
GIFEQIFGL	9	Unmodified	_GIFEQIFGL_					0	0	0		nc|nan|Q5JPI3-2|C3orf38;ENSG00000179021|ENST00000318887|C3orf38	nc|nan|Q5JPI3-2|C3orf38	nc|nan|Q5JPI3-2|C3orf38	MULTI-MSMS	A375_MHC_IP_R1	1	512.6786499023438	2	512.279118	1022.54368	-0.78604	-0.00040267	0.10877	5.5721E-05	-0.67727	-0.00034695	512.2790013866457	137.2	0.20561	137.2	137.08	137.28	0					8	3	3	0	0	0	0.2264	1	52843	52843		36.044	5.8194	1	2224800			17130	8199	12393	12487	16772	16772					0.03331242074330021
GIFEQIFGL	9	Unmodified	_GIFEQIFGL_					0	0	0		nc|nan|Q5JPI3-2|C3orf38;ENSG00000179021|ENST00000318887|C3orf38	nc|nan|Q5JPI3-2|C3orf38	nc|nan|Q5JPI3-2|C3orf38	MULTI-MSMS	A375_MHC_IP_R2	2	512.6784057617188	2	512.279118	1022.54368	-0.57241	-0.00029323	-0.25362	-0.00012992	-0.82603	-0.00042316	512.2787773202494	137.09	0.20712	137.2	137.07	137.28	0.11134					6	3	2	0	0	0	0.58047	1	53842	53842		15.847	4.2069	1	1699400			17131	8199	12393	12487	16773	16773					0.03331242074330021
GIFERTQTI	9	Unmodified	_GIFERTQTI_					0	0	0			REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF	REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	355.4600830078125	3	355.529346	1063.56621	-0.10861	-3.8613E-05	0.41364	0.00014706	0.30503	0.00010845	355.52944004457277	38.494	0.96893	38.494	38.218	39.187	0					38	18	4	0	0	0	0.51106	1	13068	13068		13.615	6.5131	1	21016000	+		17132	25802	12394	12488	16774	16774					0.036968414719467546
GIFERTQTI	9	Unmodified	_GIFERTQTI_					0	0	0			REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF	REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	356.2732238769531	3	355.529346	1063.56621	-0.10861	-3.8613E-05	0.41364	0.00014706	0.30503	0.00010845	355.52944004457277	38.494	0.96893	38.494	38.218	39.187	0					38	18	4	0	0	0	0.50702	1	13074	13074		23.79	9.5716	1	21016000	+		17133	25802	12394	12488	16775	16775					0.036968414719467546
GIFERTQTI	9	Unmodified	_GIFERTQTI_					0	0	0			REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF	REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	533.189697265625	2	532.790381	1063.56621	-0.76147	-0.0004057	-0.34952	-0.00018622	-1.111	-0.00059193	532.7901161969039	38.476	0.51128	38.476	38.218	38.73	0					19	9	3	0	0	0	0.30925	1	13057	13057		41.956	41.956	1	8435100	+		17134	25802	12394	12488	16776	16776					0.036968414719467546
GIFERTQTI	9	Unmodified	_GIFERTQTI_					0	0	0			REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF	REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	356.27301025390625	3	355.529346	1063.56621	-0.51471	-0.00018299	0.30808	0.00010953	-0.20662	-7.3461E-05	355.5294188085108	37.545	0.56203	38.315	38.07	38.632	0.7709					29	10	4	0	0	0	0.60917	1	13723	13723		18.373	10.896	1	20281000	+		17135	25802	12394	12488	16777	16777					0.036968414719467546
GIFERTQTI	9	Unmodified	_GIFERTQTI_					0	0	0			REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF	REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	533.1716918945312	2	532.790381	1063.56621	-1.0173	-0.00054202	-0.36938	-0.0001968	-1.3867	-0.00073882	532.7899566050912	37.543	0.56149	38.314	38.02	38.581	0.7709					22	10	3	0	0	0	0.50484	1	13796	13796		22.658	6.509	1	7771800	+		17136	25802	12394	12488	16778	16778					0.036968414719467546
GIFFTPDF	8	Unmodified	_GIFFTPDF_					0	0	0			REV__CYP2E1|p.L171F|1|0.58|ENSG00000130649|chr10:133532147-133532147|C/T|missense_variant	REV__CYP2E1|p.L171F|1|0.58|ENSG00000130649|chr10:133532147-133532147|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	472.159423828125	2	472.231636	942.448719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.514	1	79.514	79.014	80.014	0								0	0	0	0.16876	1	29026	29026		20.871	5.103	1		+		17137	15953	12395	12489	16779	16779					-0.02480691396851853
GIFGGHIRSV	10	Unmodified	_GIFGGHIRSV_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MULTI-SECPEP	A375_MHC_IP_R1	1	522.1928100585938	2	521.793258	1041.57196	-0.38747	-0.00020218	-0.010696	-5.5812E-06	-0.39816	-0.00020776	521.7932996657543	47.693	0.75616	47.693	47.366	48.122	0					29	14	3	0	0	0	0.06997	1	16755	16755		93.938	8.2966	1	22903000			17138	2429	12396	12490	16780	16780					0.05283984774268902
GIFGGHIRSV	10	Unmodified	_GIFGGHIRSV_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MULTI-SECPEP	A375_MHC_IP_R2	2	522.1928100585938	2	521.793258	1041.57196	-0.44094	-0.00023008	-0.51021	-0.00026622	-0.95114	-0.0004963	521.7930143818904	46.626	0.61155	47.391	47.159	47.77	0.76514					25	11	4	0	0	0	0.17966	1	17449	17449		75.571	33.615	1	19617000			17139	2429	12396	12490	16781	16781					0.05283984774268902
GIGETFCQHYT	11	Unmodified	_GIGETFCQHYT_					0	0	0		ENSG00000080839|ENST00000373664|RBL1;nc|ENSG00000080839|P28749-2|RBL1	ENSG00000080839|ENST00000373664|RBL1	ENSG00000080839|ENST00000373664|RBL1	MSMS	A375_MHC_IP_R1	1	628.3388671875	2	628.274238	1254.53392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.99	1	123.99	123.49	124.49	0								0	0	0	0.1624	1	46490	46490		6.2058	0.9089	1				17140	1723	12397	12491	16782	16782					-0.08316313993373114
GIGGDEWWRAF	11	Unmodified	_GIGGDEWWRAF_					0	0	0			REV__ENST00000393110.6_1_2:120021396-120021600:+|nuORF	REV__ENST00000393110.6_1_2:120021396-120021600:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	431.2882385253906	3	431.871883	1292.59382	-0.0556	-2.4012E-05	-0.88814	-0.00038356	-0.94374	-0.00040758	431.8714091215326	45.966	0.45689	45.966	45.738	46.195	0					17	8	3	0	0	0	0.99805	1	16131	16131		1.4551	0.12547	1	2761400	+		17141	24289	12398	12492	16783	16783					-0.040772552678163265
GIGGKNVKY	9	Unmodified	_GIGGKNVKY_					0	0	0			REV__tr|U7SS40|U7SS40_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01533PE=4SV=1	REV__tr|U7SS40|U7SS40_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01533PE=4SV=1	MSMS	A375_MHC_IP_R1	1	468.32098388671875	2	468.269084	934.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.662	1	51.662	51.162	52.162	0								0	0	0	0.15486	1	18345	18345		13.508	0	1		+		17142	28416	12399	12493	16784	16784					0.05373491134366759
GIGKGFLPPI	10	Unmodified	_GIGKGFLPPI_					0	0	0		ENST00000528006.1_1_11:66102725-66103145:-|nuORF;ENST00000526246.5_1_11:66102725-66103043:-|nuORF	ENST00000528006.1_1_11:66102725-66103145:-|nuORF	ENST00000528006.1_1_11:66102725-66103145:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	499.1790466308594	2	499.805303	997.596052	-0.68567	-0.0003427	2.0598	0.0010295	1.3741	0.00068679	499.80725352602894	65.459	0.25488	66.197	65.968	66.222	0.73811					5	4	2	0	0	0	0.80715	1	24790	24790		11.64	0	1	442160			17143	13081	12400	12494	16785	16785					0.09715825207945272
GIGLAKIP	8	Unmodified	_GIGLAKIP_					0	0	0		ENST00000540749.1_1_12:9280730-9280835:+|nuORF	ENST00000540749.1_1_12:9280730-9280835:+|nuORF	ENST00000540749.1_1_12:9280730-9280835:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	767.7384643554688	1	768.497801	767.490525	-0.29361	-0.00022564	-0.54845	-0.00042148	-0.84206	-0.00064712	768.5005142773073	126.08	0.25049	126.08	125.9	126.15	0					5	4	2	0	0	0	0.972	1	48138	48138		11.114	0	1	6433100			17144	13275	12401	12495	16786	16786					0.0974790908230716
GIGPFISNLI	10	Unmodified	_GIGPFISNLI_					0	0	0			REV__ENSG00000198060|ENST00000358935|MARCHF5	REV__ENSG00000198060|ENST00000358935|MARCHF5	MULTI-SECPEP	A375_MHC_IP_R2	2	515.179443359375	2	515.800217	1029.58588	-0.8225	-0.00042425	-1.0463	-0.00053968	-1.8688	-0.00096392	516.3014928615733	74.718	0.50987	75.455	75.06	75.57	0.73751					12	9	2	0	0	0	0.8716	1	28361	28361		7.9102	0.62092	1	7782400	+		17145	22343	12402	12496	16787	16787					0.07227217482704873
GIGRCLLFL	9	Unmodified	_GIGRCLLFL_					0	0	0		ENST00000296328.8_1_3:196082686-196082773:-|nuORF	ENST00000296328.8_1_3:196082686-196082773:-|nuORF	ENST00000296328.8_1_3:196082686-196082773:-|nuORF	MSMS	A375_MHC_IP_R1	1	496.340576171875	2	496.291505	990.568457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.757	1	81.757	81.257	82.257	0								0	0	0	0.15486	1	29882	29882		12.532	1.4171	1				17146	10506	12403	12497	16788	16788					0.07279598676041132
GIGTGLAGLV	10	Unmodified	_GIGTGLAGLV_					0	0	0			REV__ENSG00000242950|ENST00000603053|ERVW-1	REV__ENSG00000242950|ENST00000603053|ERVW-1	MULTI-SECPEP	A375_MHC_IP_R2	2	429.65814208984375	2	429.258185	856.501818	-0.20696	-8.8838E-05	-0.10001	-4.293E-05	-0.30697	-0.00013177	429.25814317371794	45.737	0.35073	46.502	46.252	46.603	0.76519					9	6	2	0	0	0	0.21723	1	17114	17114		46.021	13.715	1	1473600	+		17147	22804	12404	12498	16789	16789					0.06782686385804482
GIGTGLAGLV	10	Unmodified	_GIGTGLAGLV_					0	0	0			REV__ENSG00000242950|ENST00000603053|ERVW-1	REV__ENSG00000242950|ENST00000603053|ERVW-1	MULTI-MATCH	A375_MHC_IP_R1	1		2	429.258185	856.501818	-0.24151	-0.00010367	0.10838	4.6523E-05	-0.13313	-5.7147E-05	429.2581263168612	46.622	0.40458	46.622	46.395	46.799	0	0.059776	0.00010186	NaN	46.021	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1266200	+		17148	22804	12404	12498							0.06782686385804482
GIGTVEESL	9	Unmodified	_GIGTVEESL_					0	0	0		nc|ENSG00000076864|P47736-2|RAP1GAP	nc|ENSG00000076864|P47736-2|RAP1GAP	nc|ENSG00000076864|P47736-2|RAP1GAP	MSMS	A375_MHC_IP_R2	2	452.6424865722656	2	452.73474	903.454927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.212	1	41.987	41.487	42.487	0.77451								0	0	0	0.089973	1	15284	15284		44.407	0	1				17149	14483	12405	12499	16790	16790					-0.0006621795599812685
GIGVMPKRG	9	Unmodified	_GIGVMPKRG_					0	0	0		ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	MSMS	A375_MHC_IP_R1	1	457.6646728515625	2	457.765655	913.516756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.43	1	103.43	102.93	103.93	0								0	0	0	0.15486	1	37993	37993		4.756	1.8668	1				17150	2713	12406	12500	16791	16791					0.056538549821539164
GIGVMPKRG	9	Unmodified	_GIGVMPKRG_					0	0	0		ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	MSMS	A375_MHC_IP_R2	2	457.664306640625	2	457.765655	913.516756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.59	1	103.36	102.86	103.86	0.76428								0	0	0	0.15486	1	38870	38870		7.9102	5.0209	1				17151	2713	12406	12500	16792	16792					0.056538549821539164
GIGYIYFPRFI	11	Unmodified	_GIGYIYFPRFI_					0	0	0			REV__tr|U7SRC6|U7SRC6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01709PE=3SV=1	REV__tr|U7SRC6|U7SRC6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01709PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	449.6793518066406	3	449.248291	1344.72304	0.31934	0.00014346	-3.2299	-0.001451	-2.9105	-0.0013076	449.2475349254212	69.757	0.20291	69.757	69.579	69.782	0					5	3	2	0	0	0	0.99805	1	25285	25285		3.0723	0.22898	1	546930	+		17152	28393	12407	12501	16793	16793					0.06447126362240851
GIGYQIFGNA	10	Unmodified	_GIGYQIFGNA_					0	0	0		nc|ENSG00000006576|Q8N3S3-4|PHTF2;nc|ENSG00000006576|Q8N3S3-3|PHTF2;nc|ENSG00000006576|Q8N3S3-2|PHTF2;ENSG00000006576|ENST00000416283|PHTF2;nc|ENSG00000006576|Q8N3S3-7|PHTF2	nc|ENSG00000006576|Q8N3S3-4|PHTF2	nc|ENSG00000006576|Q8N3S3-4|PHTF2	MULTI-SECPEP	A375_MHC_IP_R2	2	520.0029907226562	2	520.263999	1038.51345	-0.53273	-0.00027716	-0.2751	-0.00014313	-0.80783	-0.00042028	520.2637650043821	84.729	0.65999	85.465	85.222	85.882	0.73602					18	12	2	0	0	0	0.83086	1	32239	32239		15.847	3.3156	1	1748700			17153	919	12408	12502	16794	16794					-0.0042711659086762666
GIHAIITDTL	10	Unmodified	_GIHAIITDTL_					0	0	0			REV__nc|ENSG00000181109|Q8NH57|OR52P1	REV__nc|ENSG00000181109|Q8NH57|OR52P1	MSMS	A375_MHC_IP_R2	2	527.1976928710938	2	527.300581	1052.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.43	1	115.14	114.64	115.64	0.70985								0	0	0	0.15207	1	43137	43137		13.906	0	1		+		17154	27390	12409	12503	16795	16795					0.062420121317472876
GIHKLLLSER	10	Unmodified	_GIHKLLLSER_					0	0	0			REV__nc|ENSG00000100852|Q13017-2|ARHGAP5	REV__nc|ENSG00000100852|Q13017-2|ARHGAP5	MSMS	A375_MHC_IP_R1	1	389.25238037109375	3	389.239907	1164.69789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.633	1	30.633	30.133	31.133	0								0	0	0	0.15365	1	9753	9753		8.9762	3.1928	1		+		17155	17124	12410	12504	16796	16796					0.12213071559722266
GIHRFQTIS	9	Unmodified	_GIHRFQTIS_					0	0	0			REV__nc|ENSG00000166377|O43861-2|ATP9B	REV__nc|ENSG00000166377|O43861-2|ATP9B	MULTI-SECPEP	A375_MHC_IP_R1	1	529.1953125	2	529.790715	1057.56688	-0.69618	-0.00036883	-0.12994	-6.884E-05	-0.82612	-0.00043767	529.7905628883966	32.999	0.71014	32.999	32.734	33.445	0					34	13	3	0	0	0	0.75466	1	10881	10881		7.9102	7.9102	1	13837000	+		17156	20673	12411	12505	16797	16797					0.04039680911682808
GIIDRIFQA	9	Unmodified	_GIIDRIFQA_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1;ENST00000463793.1_1_1:234546169-234556549:-|nuORF	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	517.1956176757812	2	516.795466	1031.57638	-0.42766	-0.00022101	0.2367	0.00012233	-0.19095	-9.8682E-05	516.7954116890497	105.44	0.45691	105.44	105.2	105.65	0					14	8	2	0	0	0	0.33896	1	38734	38734		47.594	16.326	1	2616100			17157	1303	12412	12506	16798	16798					0.06185449197187154
GIIDRIFQA	9	Unmodified	_GIIDRIFQA_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1;ENST00000463793.1_1_1:234546169-234556549:-|nuORF	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1953735351562	2	516.795466	1031.57638	-0.69849	-0.00036098	0.1713	8.8527E-05	-0.52719	-0.00027245	516.7955546742539	104.49	0.66333	105.25	104.9	105.56	0.76308					20	12	3	0	0	0	0.074405	1	39530	39530		70.332	30.382	1	3421700			17158	1303	12412	12506	16799	16799					0.06185449197187154
GIIEIKEVR	9	Unmodified	_GIIEIKEVR_					0	0	0			REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-MSMS	A375_MHC_IP_R2	2	353.5976867675781	3	352.885241	1055.63389	-0.18447	-6.5098E-05	-0.075391	-2.6605E-05	-0.25986	-9.1702E-05	352.88519171835077	64.556	0.76374	65.296	65.004	65.768	0.74022					39	14	4	0	0	0	0.22528	1	24424	24424		33.445	4.0077	1	16426000	+		17159	20338	12413	12507	16800	16800					0.10830291402771763
GIIEIKEVR	9	Unmodified	_GIIEIKEVR_					0	0	0			REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-SECPEP	A375_MHC_IP_R2	2	353.5976867675781	3	352.885241	1055.63389	-0.18447	-6.5098E-05	-0.075391	-2.6605E-05	-0.25986	-9.1702E-05	352.88519171835077	64.556	0.76374	65.296	65.004	65.768	0.74022					39	14	4	0	0	0	0.46045	1	24424	24424		33.445	14.724	1	16426000	+		17160	20338	12413	12507	16801	16801					0.10830291402771763
GIIFRQSP	8	Unmodified	_GIIFRQSP_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-SECPEP	A375_MHC_IP_R2	2	917.7796630859375	1	917.520328	916.513051	-0.17667	-0.0001621	0.13673	0.00012545	-0.039941	-3.6646E-05	917.5205500472046	116.36	0.51106	117.02	116.77	117.28	0.65961					14	9	2	0	0	0	0.972	1	43876	43876		0.52476	0	1	19804000			17161	8944	12414	12508	16802	16802					0.05145508479949967
GIIGKNKAV	9	Unmodified	_GIIGKNKAV_					0	0	0		nc|ENSG00000088836|Q8NBS3-5|SLC4A11;ENSG00000088836|ENST00000642402|SLC4A11;nc|ENSG00000088836|Q8NBS3-1|SLC4A11;nc|ENSG00000088836|Q8NBS3-4|SLC4A11	nc|ENSG00000088836|Q8NBS3-5|SLC4A11	nc|ENSG00000088836|Q8NBS3-5|SLC4A11	MULTI-SECPEP	A375_MHC_IP_R2	2	449.6448669433594	2	450.287277	898.560001	-0.59196	-0.00026655	0.0065912	2.9679E-06	-0.58537	-0.00026359	450.2874005436125	60.898	0.30433	61.643	61.414	61.718	0.74503					7	5	2	0	0	0	0.78348	1	22983	22983		4.3292	4.3292	1	899740			17162	1900	12415	12509	16803	16803					0.10666368031081674
GIIGKNKAV	9	Unmodified	_GIIGKNKAV_					0	0	0		nc|ENSG00000088836|Q8NBS3-5|SLC4A11;ENSG00000088836|ENST00000642402|SLC4A11;nc|ENSG00000088836|Q8NBS3-1|SLC4A11;nc|ENSG00000088836|Q8NBS3-4|SLC4A11	nc|ENSG00000088836|Q8NBS3-5|SLC4A11	nc|ENSG00000088836|Q8NBS3-5|SLC4A11	MULTI-MATCH	A375_MHC_IP_R1	1		2	450.287277	898.560001	-0.10985	-4.9466E-05	0.094089	4.2367E-05	-0.015765	-7.0986E-06	450.287235243957	61.92	0.35949	61.92	61.737	62.097	0	0.13815	1.8346E-05	NaN	4.3292	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	901890			17163	1900	12415	12509							0.10666368031081674
GIIKENQAV	9	Unmodified	_GIIKENQAV_					0	0	0			REV__tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	REV__tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	486.6793518066406	2	486.279649	970.544745	-0.19519	-9.4915E-05	0.30308	0.00014738	0.10789	5.2465E-05	486.2796496212587	96.578	0.81407	96.578	96.12	96.934	0					24	15	3	0	0	0	0.28216	1	35508	35508		34.402	3.7652	1	1782100	+		17164	28466	12416	12510	16804	16804					0.05829456443234449
GIILELMY	8	Unmodified	_GIILELMY_					0	0	0		tr|U7SGG9|U7SGG9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02302PE=4SV=1	tr|U7SGG9|U7SGG9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02302PE=4SV=1	tr|U7SGG9|U7SGG9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02302PE=4SV=1	MSMS	A375_MHC_IP_R2	2	476.59820556640625	2	476.264622	950.514691	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.86	1	34.612	34.112	35.112	0.75225								0	0	0	0.16876	1	12163	12163		36.466	2.2788	1				17165	29405	12417	12511	16805	16805					0.03745381453700247
GIIRRLRQL	9	Unmodified	_GIIRRLRQL_					0	0	0			REV__ENST00000196371.9_1_5:41731180-41731306:-|nuORF	REV__ENST00000196371.9_1_5:41731180-41731306:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	375.9841613769531	3	375.584008	1123.73019	-0.37194	-0.00013969	0.83867	0.00031499	0.46674	0.0001753	375.58419778170816	36.956	0.45584	37.727	37.461	37.917	0.7709					17	8	3	0	0	0	0.74875	1	13537	13537		15.248	0.8431	1	2598100	+		17166	23020	12418	12512	16806	16806					0.17327903753357532
GIISSKLEL	9	Unmodified	_GIISSKLEL_					0	0	0			REV__ENST00000527097.5_1_11:47193699-47198404:-|nuORF	REV__ENST00000527097.5_1_11:47193699-47198404:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	480.6918640136719	2	480.292225	958.569897	-0.45985	-0.00022086	0.068337	3.2822E-05	-0.39152	-0.00018804	480.29218880198454	84.624	1.4764	85.36	84.762	86.239	0.73602					76	28	4	0	0	0	0.0054362	1	31992	31992		134.3	19.647	1	18921000	+		17167	19667	12419	12513	16807	16807					0.08895511245816579
GIIVSEVPSI	10	Unmodified	_GIIVSEVPSI_					0	0	0			REV__tr|U7T5I4|U7T5I4_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00161PE=4SV=1	REV__tr|U7T5I4|U7T5I4_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00161PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	507.6973571777344	2	507.297507	1012.58046	-0.40507	-0.00020549	-0.36446	-0.00018489	-0.76953	-0.00039038	507.29737532967033	93.927	1.2683	93.927	93.023	94.291	0					27	12	3	0	0	0	0.32951	1	34521	34521		37.974	5.6685	1	5288300	+		17168	28826	12420	12514	16808	16808					0.0746749390025343
GIIVSEVPSI	10	Unmodified	_GIIVSEVPSI_					0	0	0			REV__tr|U7T5I4|U7T5I4_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00161PE=4SV=1	REV__tr|U7T5I4|U7T5I4_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00161PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	507.697509765625	2	507.297507	1012.58046	-0.64328	-0.00032633	0.19094	9.6864E-05	-0.45234	-0.00022947	507.2976790977253	93.123	1.0663	93.862	93.443	94.509	0.73902					46	20	3	0	0	0	0.45919	2	35624	35624;35627		30.637	5.2372	1	5914500	+		17169	28826	12420	12514	16809;16810	16809					0.0746749390025343
GIIVSEVPSI	10	Unmodified	_GIIVSEVPSI_					0	0	0			REV__tr|U7T5I4|U7T5I4_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00161PE=4SV=1	REV__tr|U7T5I4|U7T5I4_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00161PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	507.69708251953125	2	507.297507	1012.58046	-0.64328	-0.00032633	0.19094	9.6864E-05	-0.45234	-0.00022947	507.2976790977253	93.123	1.0663	93.862	93.443	94.509	0.73902					46	20	3	0	0	0	0.43292	1	35374	35374		25.399	4.9457	1	5914500	+		17170	28826	12420	12514	16811	16811					0.0746749390025343
GIKESAGPL	9	Unmodified	_GIKESAGPL_					0	0	0			REV__ENSG00000162408|ENST00000377705|NOL9	REV__ENSG00000162408|ENST00000377705|NOL9	MULTI-SECPEP	A375_MHC_IP_R2	2	435.95465087890625	2	436.247818	870.481082	-0.22652	-9.8818E-05	-0.50984	-0.00022242	-0.73636	-0.00032124	436.2475463535588	63.459	0.71228	64.199	63.885	64.597	0.74022					22	13	2	0	0	0	0.69504	1	23964	23964		7.9102	0	1	4934300	+		17171	20250	12421	12515	16812	16812					0.04066096006135922
GIKESTILI	9	Unmodified	_GIKESTILI_					0	0	0		tr|U7T2M4|U7T2M4_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00626PE=3SV=1	tr|U7T2M4|U7T2M4_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00626PE=3SV=1	tr|U7T2M4|U7T2M4_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00626PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	487.197021484375	2	487.30005	972.585547	-0.49035	-0.00023895	0.29245	0.00014251	-0.19789	-9.6433E-05	487.3000239177125	91.25	1.1139	91.985	91.566	92.68	0.7345					69	21	5	0	0	0	0.24548	1	34702	34702		43.858	1.9027	1	4759500			17172	29940	12422	12516	16813	16813					0.09815797762871625
GIKFLPNLWWF	11	Unmodified	_GIKFLPNLWWF_					0	0	0			REV__nc|ENSG00000125257|O15439-4|ABCC4	REV__nc|ENSG00000125257|O15439-4|ABCC4	MSMS	A375_MHC_IP_R2	2	710.9160766601562	2	710.892441	1419.77033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.417	1	94.159	93.659	94.659	0.74203								0	0	0	0.1629	1	35514	35514		3.5965	0	1		+		17173	18332	12423	12517	16814	16814					0.07723405633237235
GIKYYLDDK	9	Unmodified	_GIKYYLDDK_					0	0	0			REV__tr|U7SUX9|U7SUX9_FUSNUThreoninealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01431PE=3SV=1	REV__tr|U7SUX9|U7SUX9_FUSNUThreoninealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01431PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	372.6018371582031	3	372.197485	1113.57063	0.33415	0.00012437	-2.6542	-0.00098787	-2.32	-0.0008635	372.19729271369476	41.507	0.91602	42.281	41.946	42.862	0.77451					48	17	5	0	0	0	0.72985	1	15308	15308		2.4985	0.21571	1	8218700	+		17174	28571	12424	12518	16815	16815					0.018383058948302278
GILCYGCDLV	10	Unmodified	_GILCYGCDLV_					0	0	0			REV__ENSG00000008226|ENST00000308059|DLEC1	REV__ENSG00000008226|ENST00000308059|DLEC1	MULTI-MSMS	A375_MHC_IP_R2	2	528.64794921875	2	528.248646	1054.48274	-0.52042	-0.00027491	-1.2147	-0.00064168	-1.7352	-0.00091659	528.248029850833	127.17	0.20177	127.44	127.26	127.46	0.26593					5	3	2	0	0	0	0.40101	1	49827	49827		34.102	1.797	1	9884700	+		17175	16168	12425	12519	16816	16816					-0.042323542917984014
GILCYGCDLV	10	Unmodified	_GILCYGCDLV_					0	0	0			REV__ENSG00000008226|ENST00000308059|DLEC1	REV__ENSG00000008226|ENST00000308059|DLEC1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	528.248646	1054.48274	-0.52042	-0.00027491	-1.2147	-0.00064168	-1.7352	-0.00091659	528.248029850833	127.17	0.20177	127.44	127.26	127.46	0.26593	-0.003561	-8.0932E-05	NaN	34.102	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9884700	+		17176	16168	12425	12519							-0.042323542917984014
GILEKISEI	9	Unmodified	_GILEKISEI_					0	0	0		ENSG00000108591|ENST00000225729|DRG2;ENST00000473213.1_1_17:17991337-17997380:+|nuORF;ENST00000583162.1_1_17:17991337-18002989:+|nuORF;ENST00000578173.5_1_17:17991241-18001751:+|nuORF	ENSG00000108591|ENST00000225729|DRG2	ENSG00000108591|ENST00000225729|DRG2	MULTI-MSMS	A375_MHC_IP_R2	2	501.697265625	2	501.297507	1000.58046	-0.44578	-0.00022347	-0.063725	-3.1945E-05	-0.5095	-0.00025541	501.2973512777453	93.704	0.55641	94.449	94.211	94.768	0.74474					21	10	3	0	0	0	0.015356	1	35644	35644		89.401	4.1287	1	2241500			17177	2820	12426	12520	16817	16817					0.08019493900224006
GILEKISEI	9	Unmodified	_GILEKISEI_					0	0	0		ENSG00000108591|ENST00000225729|DRG2;ENST00000473213.1_1_17:17991337-17997380:+|nuORF;ENST00000583162.1_1_17:17991337-18002989:+|nuORF;ENST00000578173.5_1_17:17991241-18001751:+|nuORF	ENSG00000108591|ENST00000225729|DRG2	ENSG00000108591|ENST00000225729|DRG2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	501.297507	1000.58046	-0.5446	-0.00027301	0.27177	0.00013624	-0.27283	-0.00013677	501.29733767648764	94.716	0.56126	94.716	94.446	95.007	0	0.13376	0.00022386	NaN	89.401	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1943500			17178	2820	12426	12520							0.08019493900224006
GILGIQPPSV	10	Unmodified	_GILGIQPPSV_					0	0	0		nc|ENSG00000213079|Q9UPN6-2|SCAF8;ENSG00000213079|ENST00000367178|SCAF8	nc|ENSG00000213079|Q9UPN6-2|SCAF8	nc|ENSG00000213079|Q9UPN6-2|SCAF8	MULTI-SECPEP	A375_MHC_IP_R2	2	490.6682434082031	2	490.792392	979.570232	-0.34323	-0.00016846	-0.20121	-9.8752E-05	-0.54444	-0.00026721	490.79235948612114	114.71	0.71406	115.4	114.96	115.68	0.68999					19	13	2	0	0	0	0.6774	1	43342	43342		34.402	16.255	1	2757400			17179	14893	12427	12521	16818	16818					0.07962930965663872
GILLYRKWKRR	11	Unmodified	_GILLYRKWKRR_					0	0	0			REV__ENSG00000162542|ENST00000294543|TMCO4	REV__ENSG00000162542|ENST00000294543|TMCO4	MSMS	A375_MHC_IP_R2	2	744.9747314453125	2	744.967337	1487.92012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.23	1	125.53	125.03	126.03	0.2951								0	0	0	0.16331	1	48742	48742		1.4819	0.15237	1		+		17180	20265	12428	12522	16819	16819					0.19567770695698528
GILQGYVTF	9	Unmodified	_GILQGYVTF_					0	0	0			REV__ENST00000601957.5_1_19:35433558-35435739:+|nuORF	REV__ENST00000601957.5_1_19:35433558-35435739:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	499.6722106933594	2	499.271293	996.528032	-0.38404	-0.00019174	3.469	0.001732	3.085	0.0015403	499.2735678566438	73.837	0.91312	73.837	73.082	73.995	0					26	17	3	0	0	0	0.3607	1	26896	26896		42.095	2.1372	1	1962000	+		17181	20874	12429	12523	16820	16820					0.02962955557291025
GILQSFIQDV	10	Unmodified	_GILQSFIQDV_					0	0	0		ENSG00000182568|ENST00000338745|SATB1;nc|ENSG00000182568|Q01826-2|SATB1	ENSG00000182568|ENST00000338745|SATB1	ENSG00000182568|ENST00000338745|SATB1	MULTI-SECPEP	A375_MHC_IP_R1	1	560.7236938476562	2	560.305864	1118.59717	-0.73364	-0.00041106	0.15314	8.5803E-05	-0.5805	-0.00032526	560.3064293651009	90.871	0.45739	90.871	90.59	91.048	0					13	8	2	0	0	0	0.79895	1	33449	33449		39.95	1.7741	1	2074300			17182	8419	12430	12524	16821	16821					0.04261994786179457
GILRDALSV	9	Unmodified	_GILRDALSV_					0	0	0			REV__ENST00000369936.2_1_1:109730792-109745631:+|nuORF	REV__ENST00000369936.2_1_1:109730792-109745631:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	472.6817626953125	2	472.282192	942.549831	-0.58827	-0.00027783	0.065036	3.0715E-05	-0.52323	-0.00024711	472.282254994295	80.617	1.2167	80.617	80.238	81.455	0					54	23	3	0	0	0	0.01574	1	29387	29387		88.904	9.3073	1	30385000	+		17183	17953	12431	12525	16822	16822					0.07625760305847962
GILRDALSV	9	Unmodified	_GILRDALSV_					0	0	0			REV__ENST00000369936.2_1_1:109730792-109745631:+|nuORF	REV__ENST00000369936.2_1_1:109730792-109745631:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	472.193603515625	2	472.282192	942.549831	-0.49949	-0.0002359	-0.43304	-0.00020452	-0.93253	-0.00044042	472.281983534472	79.665	0.9135	80.409	80.098	81.011	0.74473					41	17	4	0	0	0	0.13797	1	30138	30138		43.858	2.0187	1	23508000	+		17184	17953	12431	12525	16823	16823					0.07625760305847962
GILRDALSV	9	Unmodified	_GILRDALSV_					0	0	0			REV__ENST00000369936.2_1_1:109730792-109745631:+|nuORF	REV__ENST00000369936.2_1_1:109730792-109745631:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	472.282192	942.549831	-0.49949	-0.0002359	-0.43304	-0.00020452	-0.93253	-0.00044042	472.281983534472	79.665	0.9135	80.409	80.098	81.011	0.74473	-0.10411	-0.00020753	NaN	88.904	41	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23508000	+		17185	17953	12431	12525							0.07625760305847962
GILVGESRSFK	11	Unmodified	_GILVGESRSFK_					0	0	0		ENSG00000118507|ENST00000431975|AKAP7	ENSG00000118507|ENST00000431975|AKAP7	ENSG00000118507|ENST00000431975|AKAP7	MULTI-MSMS	A375_MHC_IP_R2	2	399.2774963378906	3	398.227667	1191.66117	-0.40012	-0.00015934	1.4195	0.00056527	1.0193	0.00040593	398.5627340643439	20.176	1.064	20.786	20.146	21.21	0.61029					58	17	5	0	0	0	0.73064	1	6134	6134		8.2864	1.2493	1	9911300			17186	3546	12432	12526	16824	16824					0.07300774943132637
GINSIGFALL	10	Unmodified	_GINSIGFALL_					0	0	0		tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	503.7060852050781	2	502.792392	1003.57023	-0.24133	-0.00012134	0.61949	0.00031147	0.37816	0.00019014	502.7924304257815	82.722	1.8762	82.722	81.607	83.483	0					79	36	4	0	0	0	0.55789	1	30285	30285		24.021	2.2739	1	8680300			17187	29930	12433	12527	16825	16825					0.06858930965665877
GINYQQFLR	9	Unmodified	_GINYQQFLR_					0	0	0		nc|ENSG00000176396|Q8N6I1-2|EID2;ENSG00000176396|ENST00000390658|EID2	nc|ENSG00000176396|Q8N6I1-2|EID2	nc|ENSG00000176396|Q8N6I1-2|EID2	MULTI-SECPEP	A375_MHC_IP_R1	1	379.93646240234375	3	380.204974	1137.59309	0.2048	7.7867E-05	-1.3079	-0.00049726	-1.1031	-0.00041939	380.2043803626604	36.977	0.81033	36.977	36.439	37.249	0					26	15	2	0	0	0	0.74875	1	12311	12311		15.248	12.405	1	2647200			17188	8019	12434	12528	16826	16826					0.029799500831359182
GIPGPPGVV	9	Unmodified	_GIPGPPGVV_					0	0	0		ENSG00000182447|ENST00000327928|OTOL1	ENSG00000182447|ENST00000327928|OTOL1	ENSG00000182447|ENST00000327928|OTOL1	MULTI-MSMS	A375_MHC_IP_R1	1	397.2926940917969	2	396.734346	791.454139	-0.0065485	-2.598E-06	-0.67469	-0.00026767	-0.68124	-0.00027027	396.73418197682577	78.061	0.45918	78.061	77.742	78.201	0					13	8	2	0	0	0	0.12743	1	28444	28444		45.75	9.2838	1	790620			17189	8407	12435	12529	16827	16827					0.05007032185619664
GIPPAPRGV	9	Unmodified	_GIPPAPRGV_					0	0	0		ENSG00000173110|ENST00000309758|HSPA6;ENST00000532091.1_1_11:122929265-122929517:-|nuORF;ENST00000432228.1_1_2:222827655-222828180:+|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000044574|ENST00000324460|HSPA5;ENST00000509378.1_1_4:165110937-165111516:+|nuORF;ENSG00000109971|ENST00000534624|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000425843.1_1_X:120337248-120337797:-|nuORF;ENSG00000113013|ENST00000297185|HSPA9;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000173110|ENST00000309758|HSPA6;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000044574|ENST00000324460|HSPA5;ENSG00000109971|ENST00000534624|HSPA8;ENSG00000113013|ENST00000297185|HSPA9;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	A375_MHC_IP_R1	1	432.65838623046875	2	432.25852	862.502486	-0.19376	-8.3756E-05	0.21445	9.2697E-05	0.020685	8.9413E-06	432.2585656655601	37.633	3.0526	37.633	36.339	39.391	0					144	59	3	0	0	0	0.13491	3	12575	12398;12575;13048		44.407	8.3628	1	19663000			17190	2906;1188;9437;3122;7769;9438	12436	12530	16828;16829;16830	16829					0.06573525825513116
GIPPAPRGV	9	Unmodified	_GIPPAPRGV_					0	0	0		ENSG00000173110|ENST00000309758|HSPA6;ENST00000532091.1_1_11:122929265-122929517:-|nuORF;ENST00000432228.1_1_2:222827655-222828180:+|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000044574|ENST00000324460|HSPA5;ENST00000509378.1_1_4:165110937-165111516:+|nuORF;ENSG00000109971|ENST00000534624|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000425843.1_1_X:120337248-120337797:-|nuORF;ENSG00000113013|ENST00000297185|HSPA9;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000173110|ENST00000309758|HSPA6;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000044574|ENST00000324460|HSPA5;ENSG00000109971|ENST00000534624|HSPA8;ENSG00000113013|ENST00000297185|HSPA9;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	A375_MHC_IP_R2	2	433.2849426269531	2	432.25852	862.502486	-0.63309	-0.00027366	0.26948	0.00011648	-0.36361	-0.00015717	432.2585853207103	36.631	3.2605	37.402	36.24	39.501	0.7709					145	63	3	0	0	0	0.58047	1	13263	13263		15.847	0.078963	1	17038000			17191	2906;1188;9437;3122;7769;9438	12436	12530	16831	16831					0.06573525825513116
GIPQTNGSV	9	Unmodified	_GIPQTNGSV_					0	0	0			REV__ENST00000409003.4_2_8:119208327-119208516:-|nuORF	REV__ENST00000409003.4_2_8:119208327-119208516:-|nuORF	MSMS	A375_MHC_IP_R2	2	436.6897888183594	2	436.727249	871.439946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.195	1	42.967	42.467	43.467	0.7724								0	0	0	0.15411	1	15689	15689		14.838	1.3304	1		+		17192	24459	12437	12531	16832	16832					-0.0009166503332380671
GIQKIGSIF	9	Unmodified	_GIQKIGSIF_					0	0	0		GRIK3|p.G823S|1|0.06|ENSG00000163873|chr1:36805085-36805085|C/T|missense_variant	GRIK3|p.G823S|1|0.06|ENSG00000163873|chr1:36805085-36805085|C/T|missense_variant	GRIK3|p.G823S|1|0.06|ENSG00000163873|chr1:36805085-36805085|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	482.18658447265625	2	481.78711	961.559667	-0.39247	-0.00018909	-0.10749	-5.1787E-05	-0.49996	-0.00024088	481.7869424815136	57.999	0.45667	57.999	57.771	58.228	0					16	8	3	0	0	0	0.14422	1	20848	20848		43.858	3.901	1	2488200			17193	14082	12438	12532	16833	16833					0.07734948311235712
GIRDPRSEY	9	Unmodified	_GIRDPRSEY_					0	0	0		ENSG00000144283|ENST00000389759|PKP4;ENST00000480171.7_1_2:159519375-159537186:+|nuORF;ENST00000486254.3_1_2:159526197-159533456:+|nuORF	ENSG00000144283|ENST00000389759|PKP4	ENSG00000144283|ENST00000389759|PKP4	MULTI-SECPEP	A375_MHC_IP_R1	1	364.60235595703125	3	364.8526	1091.53597	0.16733	6.1053E-05	3.2426	0.0011831	3.4099	0.0012441	365.1885265311354	34.588	0.40485	34.588	34.303	34.708	0					11	7	2	0	0	0	0.75466	1	11355	11355		2.4985	0.21571	1	1042300			17194	5476	12439	12533	16834	16834					-0.006135171932328376
GIRLRIPII	9	Unmodified	_GIRLRIPII_					0	0	0			REV__tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	REV__tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	351.30963134765625	3	350.909721	1049.70733	-0.51927	-0.00018222	1.4286	0.00050129	0.90929	0.00031908	351.24473990715165	29.653	1.3504	29.653	29.353	30.703	0					60	26	3	0	0	0	0.46038	2	9495	9495;9641		15.248	4.449	1	15534000	+		17195	28730	12440	12534	16835;16836	16835					0.18446884635886818
GISDVSCYSGW	11	Unmodified	_GISDVSCYSGW_					0	0	0		nc|ENSG00000248099|P51460-2|INSL3	nc|ENSG00000248099|P51460-2|INSL3	nc|ENSG00000248099|P51460-2|INSL3	MULTI-SECPEP	A375_MHC_IP_R2	2	392.234375	3	391.834218	1172.48082	-0.73896	-0.00028955	0.93907	0.00036796	0.20011	7.8409E-05	391.8345199899259	53.029	0.45621	53.78	53.538	53.995	0.75105					13	8	2	0	0	0	0.99921	1	20051	20051		0.08335	0	1	1751400			17196	14919	12441	12535	16837	16837					-0.09851691776043481
GISDVTVSY	9	Unmodified	_GISDVTVSY_					0	0	0		ENSG00000178394|ENST00000323865|HTR1A	ENSG00000178394|ENST00000323865|HTR1A	ENSG00000178394|ENST00000323865|HTR1A	MSMS	A375_MHC_IP_R2	2	470.800048828125	2	470.73474	939.454927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.866	1	25.51	25.01	26.01	0.64368								0	0	0	0.15486	1	8241	8241		7.9102	0	1				17197	8156	12442	12536	16838	16838					-0.017222179560008044
GISEIMQLL	9	Unmodified	_GISEIMQLL_					0	0	0			REV__ENSG00000174327|ENST00000308027|SLC16A13	REV__ENSG00000174327|ENST00000308027|SLC16A13	MULTI-SECPEP	A375_MHC_IP_R1	1	1004.3209228515625	1	1003.54924	1002.54197	0.42118	0.00042268	-0.63721	-0.00063947	-0.21602	-0.00021679	1003.548431405217	126.18	0.35301	126.18	126	126.36	0					12	6	3	0	0	0	0.083712	1	48106	48106		74.929	22.661	1	40006000	+		17198	21278	12443	12537	16839	16839					0.040798649940711584
GISLGVCPVKR	11	Unmodified	_GISLGVCPVKR_					0	0	0			REV__ENST00000506579.5_1_5:140056223-140057407:-|nuORF	REV__ENST00000506579.5_1_5:140056223-140057407:-|nuORF	MSMS	A375_MHC_IP_R1	1	564.73193359375	2	564.831526	1127.6485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.725	1	37.725	37.225	38.225	0								0	0	0	0.16179	1	12738	12738		9.3831	0.78985	1		+		17199	20992	12444	12538	16840	16840					0.08978040279248489
GISPATVVK	9	Unmodified	_GISPATVVK_					0	0	0		nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	MULTI-SECPEP	A375_MHC_IP_R1	1	436.66595458984375	2	436.26601	870.517468	0.002105	9.1836E-07	0.0050625	2.2086E-06	0.0071675	3.127E-06	436.2659698781271	47.743	0.50373	47.743	47.517	48.02	0					22	9	3	0	0	0	0.3213	1	16810	16810		37.974	24.068	1	6278100			17200	6748	12445	12539	16841	16841					0.0770297290284816
GITAAGIGIL	10	Unmodified	_GITAAGIGIL_					0	0	0			REV__ENSG00000073734|ENST00000650372|ABCB11	REV__ENSG00000073734|ENST00000650372|ABCB11	MULTI-MSMS	A375_MHC_IP_R1	1	443.67364501953125	2	443.273835	884.533118	-0.077537	-3.437E-05	0.21207	9.4004E-05	0.13453	5.9634E-05	443.2738293442974	74.337	0.55853	74.337	74.045	74.604	0					23	10	3	0	0	0	0.097291	1	27044	27044		64.236	1.6636	1	7097300	+		17201	16623	12446	12540	16842	16842					0.08623259419891838
GITAAGIGIL	10	Unmodified	_GITAAGIGIL_					0	0	0			REV__ENSG00000073734|ENST00000650372|ABCB11	REV__ENSG00000073734|ENST00000650372|ABCB11	MULTI-MSMS	A375_MHC_IP_R2	2	443.67364501953125	2	443.273835	884.533118	-0.30574	-0.00013553	0.13112	5.8124E-05	-0.17462	-7.7405E-05	443.273792874985	73.37	0.76546	74.106	73.785	74.551	0.7354					32	14	3	0	0	0	0.055257	1	27837	27837		74.423	3.2892	1	5705900	+		17202	16623	12446	12540	16843	16843					0.08623259419891838
GITDHIVQV	9	Unmodified	_GITDHIVQV_					0	0	0		nc|ENSG00000109180|Q9NX40-4|OCIAD1	nc|ENSG00000109180|Q9NX40-4|OCIAD1	nc|ENSG00000109180|Q9NX40-4|OCIAD1	MULTI-SECPEP	A375_MHC_IP_R1	1	490.9403076171875	2	491.271824	980.529095	-0.33887	-0.00016648	0.069502	3.4144E-05	-0.26937	-0.00013233	491.27188830566166	64.278	0.65857	64.278	63.939	64.597	0					20	12	2	0	0	0	0.023756	1	23246	23246		92.822	42.889	1	3438600			17203	14537	12447	12541	16844	16844					0.03805169926192775
GITQNGYSFY	10	Unmodified	_GITQNGYSFY_					0	0	0			REV__ENSG00000232263|ENST00000416044|KRTAP25-1	REV__ENSG00000232263|ENST00000416044|KRTAP25-1	MULTI-SECPEP	A375_MHC_IP_R2	2	575.6637573242188	2	575.264196	1148.51384	-0.74954	-0.00043119	0.45454	0.00026148	-0.29501	-0.00016971	575.2640047870946	53.016	0.81351	53.767	53.436	54.249	0.75105					47	15	4	0	0	0	0.77204	1	19957	19957		21.537	5.6898	1	22973000	+		17204	22745	12448	12542	16845	16845					-0.054477416616464325
GIVDELHVY	9	Unmodified	_GIVDELHVY_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000172534|P51610-3|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	MSMS	A375_MHC_IP_R2	2	522.6680908203125	2	522.771657	1043.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.553	1	27.213	26.713	27.713	0.65992								0	0	0	0.15486	1	8984	8984		13.508	4.1248	1				17205	7719	12449	12543	16846	16846					0.008737502063240754
GIVTRGEEL	9	Unmodified	_GIVTRGEEL_					0	0	0			REV__nc|ENSG00000019144|Q86UU1-2|PHLDB1	REV__nc|ENSG00000019144|Q86UU1-2|PHLDB1	MSMS	A375_MHC_IP_R1	1	487.1968994140625	2	487.269281	972.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.82	1	107.82	107.32	108.32	0								0	0	0	0.14812	1	39561	39561		24.674	3.8027	1		+		17206	16258	12450	12544	16847	16847					0.03664866063570571
GIVTVSLTAV	10	Unmodified	_GIVTVSLTAV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R1	1	480.6919860839844	2	480.292225	958.569897	-0.35555	-0.00017077	-3.5237	-0.0016924	-3.8792	-0.0018632	480.2919243213814	73.005	0.96455	73.005	72.625	73.589	0					35	18	3	0	0	0	0.19481	1	26562	26562		68.081	18.148	1	5475900	+		17207	19932	12451	12545	16848	16848					0.08895511245793841
GIWDVRQFFI	10	Unmodified	_GIWDVRQFFI_					0	0	0			REV__chr18:49491584-49491820|414|106.2|0.0|23.34|-|2|RPL17-C18orf32,None|1	REV__chr18:49491584-49491820|414|106.2|0.0|23.34|-|2|RPL17-C18orf32,None|1	MSMS	A375_MHC_IP_R1	1	640.7220458984375	2	640.842948	1279.67134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.713	1	92.713	92.213	93.213	0								0	0	0	0.1552	1	34075	34075		3.9444	0.3479	1		+		17208	15728	12452	12546	16849	16849					0.04269382668371691
GIWGFIKGV	9	Unmodified	_GIWGFIKGV_					0	0	0		ENSG00000164244|ENST00000296666|PRRC1;nc|ENSG00000164244|Q96M27-3|PRRC1;nc|ENSG00000164244|Q96M27-2|PRRC1;nc|ENSG00000164244|Q96M27-4|PRRC1;nc|ENSG00000164244|Q96M27-5|PRRC1	ENSG00000164244|ENST00000296666|PRRC1	ENSG00000164244|ENST00000296666|PRRC1	MULTI-MSMS	A375_MHC_IP_R2	2	489.1824951171875	2	488.78437	975.554188	-0.36404	-0.00017794	-1.6384	-0.00080083	-2.0025	-0.00097877	488.7834418940391	112.25	0.66269	112.98	112.61	113.27	0.72459					22	12	2	0	0	0	0.015336	1	42275	42275		89.427	51.276	1	2988400			17209	6808	12453	12547	16850	16850					0.06543269519420392
GIWREAHL	8	Unmodified	_GIWREAHL_					0	0	0		ENST00000446511.1_1_6:33289711-33290545:-|nuORF	ENST00000446511.1_1_6:33289711-33290545:-|nuORF	ENST00000446511.1_1_6:33289711-33290545:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	491.6669921875	2	491.266876	980.519199	-0.6117	-0.00030051	-0.13428	-6.5968E-05	-0.74599	-0.00036648	491.2668974030532	65.18	0.50811	65.919	65.664	66.172	0.73812					15	9	2	0	0	0	0.74466	1	24701	24701		21.747	0	1	2617400			17210	12035	12454	12548	16851	16851					0.028160267114685666
GIWREAHL	8	Unmodified	_GIWREAHL_					0	0	0		ENST00000446511.1_1_6:33289711-33290545:-|nuORF	ENST00000446511.1_1_6:33289711-33290545:-|nuORF	ENST00000446511.1_1_6:33289711-33290545:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	491.266876	980.519199	-0.49462	-0.00024299	-0.69303	-0.00034046	-1.1877	-0.00058345	491.26700038075427	66.261	0.76094	66.261	65.717	66.478	0	0.17103	-0.00047686	NaN	21.747	23	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3051100			17211	12035	12454	12548							0.028160267114685666
GIWRHLHSV	9	Unmodified	_GIWRHLHSV_					0	0	0			REV__CAPG|p.L63R|1|0.35|ENSG00000042493|chr2:85401793-85401793|A/C|missense_variant	REV__CAPG|p.L63R|1|0.35|ENSG00000042493|chr2:85401793-85401793|A/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	369.5830993652344	3	368.873559	1103.59885	0.21866	8.0658E-05	-0.62475	-0.00023045	-0.40609	-0.0001498	368.87326708355033	41.797	0.46008	42.572	42.249	42.709	0.77451					19	8	3	0	0	0	0.78753	1	15489	15489		2.4985	0.59211	1	1850300	+		17212	15571	12455	12549	16852	16852					0.05119093385451379
GIWRHLHSV	9	Unmodified	_GIWRHLHSV_					0	0	0			REV__CAPG|p.L63R|1|0.35|ENSG00000042493|chr2:85401793-85401793|A/C|missense_variant	REV__CAPG|p.L63R|1|0.35|ENSG00000042493|chr2:85401793-85401793|A/C|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	368.873559	1103.59885	0.46011	0.00016972	-1.1285	-0.00041629	-0.66843	-0.00024656	368.8732932624543	42.634	0.40471	42.634	42.436	42.841	0	0.031293	-0.00017153	NaN	4.5289	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1891000	+		17213	15571	12455	12549							0.05119093385451379
GIWWFVDL	8	Unmodified	_GIWWFVDL_					0	0	0		nc|ENSG00000169490|Q9BX73-2|TM2D2;ENSG00000169490|ENST00000456397|TM2D2	nc|ENSG00000169490|Q9BX73-2|TM2D2	nc|ENSG00000169490|Q9BX73-2|TM2D2	MULTI-SECPEP	A375_MHC_IP_R2	2	517.6814575195312	2	518.268553	1034.52255	-0.65838	-0.00034122	-0.63513	-0.00032917	-1.2935	-0.00067038	518.2682163870357	63.504	1.1171	64.244	63.632	64.749	0.74022					33	21	2	0	0	0	0.92215	1	24239	24239		10.183	0	1	1152200			17214	7409	12456	12550	16853	16853					0.006672767654663403
GIYEALEL	8	Unmodified	_GIYEALEL_					0	0	0		nc|ENSG00000108515|P13929-3|ENO3;nc|ENSG00000108515|P13929-2|ENO3;ENSG00000108515|ENST00000519602|ENO3;ENST00000519834.5_1_17:4855124-4857242:+|nuORF;ENST00000492343.1_1_1:8931941-8934967:-|nuORF;ENST00000537838.5_1_12:7024996-7025840:+|nuORF;ENST00000486051.5_1_1:8930279-8934967:-|nuORF;ENST00000539713.5_1_12:7024996-7026336:+|nuORF;ENST00000521659.5_2_17:4855435-4858958:+|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000111674|P09104-2|ENO2;ENSG00000111674|ENST00000229277|ENO2	nc|ENSG00000108515|P13929-3|ENO3;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000111674|P09104-2|ENO2	ENSG00000074800|ENST00000234590|ENO1	MULTI-SECPEP	A375_MHC_IP_R1	1	907.8781127929688	1	907.477125	906.469849	0.20551	0.0001865	-0.016045	-1.456E-05	0.18947	0.00017194	907.4769359114922	116.01	0.55915	116.01	115.68	116.24	0					22	10	3	0	0	0	0.096514	1	42496	42496		89.427	3.3055	1	10519000			17215	1593;2809;3014	12457	12551	16854	16854					0.012872739119870857
GIYEALEL	8	Unmodified	_GIYEALEL_					0	0	0		nc|ENSG00000108515|P13929-3|ENO3;nc|ENSG00000108515|P13929-2|ENO3;ENSG00000108515|ENST00000519602|ENO3;ENST00000519834.5_1_17:4855124-4857242:+|nuORF;ENST00000492343.1_1_1:8931941-8934967:-|nuORF;ENST00000537838.5_1_12:7024996-7025840:+|nuORF;ENST00000486051.5_1_1:8930279-8934967:-|nuORF;ENST00000539713.5_1_12:7024996-7026336:+|nuORF;ENST00000521659.5_2_17:4855435-4858958:+|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000111674|P09104-2|ENO2;ENSG00000111674|ENST00000229277|ENO2	nc|ENSG00000108515|P13929-3|ENO3;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000111674|P09104-2|ENO2	ENSG00000074800|ENST00000234590|ENO1	MULTI-SECPEP	A375_MHC_IP_R2	2	907.8779296875	1	907.477125	906.469849	-0.20099	-0.00018239	-0.34814	-0.00031593	-0.54913	-0.00049832	907.4775588256737	115.1	0.76405	115.79	115.37	116.14	0.68999					24	14	3	0	0	0	0.11175	1	43377	43377		97.075	22.678	1	9021300			17216	1593;2809;3014	12457	12551	16855	16855					0.012872739119870857
GIYPHKLVF	9	Unmodified	_GIYPHKLVF_					0	0	0		ENSG00000089009|ENST00000202773|RPL6;ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENST00000454924.1_1_7:63601918-63601972:-|nuORF	ENSG00000089009|ENST00000202773|RPL6	ENSG00000089009|ENST00000202773|RPL6	MULTI-MSMS	A375_MHC_IP_R1	1	359.2772521972656	3	358.542927	1072.60695	0.18634	6.6812E-05	-0.17256	-6.1871E-05	0.013781	4.9413E-06	358.5427750551587	62.421	0.97244	62.421	62.097	63.069	0					48	18	4	0	0	0	0.4875	1	22501	22501		20.415	9.615	1	14657000			17217	1907	12458	12552	16856	16856					0.07355227582229418
GIYPHKLVF	9	Unmodified	_GIYPHKLVF_					0	0	0		ENSG00000089009|ENST00000202773|RPL6;ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENST00000454924.1_1_7:63601918-63601972:-|nuORF	ENSG00000089009|ENST00000202773|RPL6	ENSG00000089009|ENST00000202773|RPL6	MULTI-MSMS	A375_MHC_IP_R2	2	358.94281005859375	3	358.542927	1072.60695	-0.52341	-0.00018767	0.092711	3.3241E-05	-0.4307	-0.00015442	358.5428964168952	61.374	0.70479	62.119	61.869	62.573	0.74503					38	13	4	0	0	0	0.36834	1	23233	23233		26.268	11.02	1	16925000			17218	1907	12458	12552	16857	16857					0.07355227582229418
GIYYYSSGY	9	Unmodified	_GIYYYSSGY_					0	0	0		PKHD1L1|p.H1477Y|1|0.45|ENSG00000205038|chr8:109442981-109442981|C/T|missense_variant	PKHD1L1|p.H1477Y|1|0.45|ENSG00000205038|chr8:109442981-109442981|C/T|missense_variant	PKHD1L1|p.H1477Y|1|0.45|ENSG00000205038|chr8:109442981-109442981|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	537.2031860351562	2	536.73474	1071.45493	-0.18375	-9.8625E-05	-1.4626	-0.000785	-1.6463	-0.00088363	536.7341447741717	69.47	0.66185	69.47	69.07	69.732	0					21	12	2	0	0	0	0.71977	1	25265	25265		5.2307	0	1	2448000			17219	15190	12459	12553	16858	16858					-0.07794217955984095
GIYYYSSGY	9	Unmodified	_GIYYYSSGY_					0	0	0		PKHD1L1|p.H1477Y|1|0.45|ENSG00000205038|chr8:109442981-109442981|C/T|missense_variant	PKHD1L1|p.H1477Y|1|0.45|ENSG00000205038|chr8:109442981-109442981|C/T|missense_variant	PKHD1L1|p.H1477Y|1|0.45|ENSG00000205038|chr8:109442981-109442981|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	536.6928100585938	2	536.73474	1071.45493	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.088	1	59.088	58.588	59.588	0								0	0	0	0.15486	1	21244	21244		5.2307	0	1				17220	15190	12459	12553	16859	16859					-0.07794217955984095
GKARPSAH	8	Unmodified	_GKARPSAH_					0	0	0		ENSG00000182095|ENST00000430969|TNRC18	ENSG00000182095|ENST00000430969|TNRC18	ENSG00000182095|ENST00000430969|TNRC18	MULTI-SECPEP	A375_MHC_IP_R2	2	823.962646484375	1	823.453311	822.446034	-0.77923	-0.00064166	-0.37874	-0.00031187	-1.158	-0.00095353	823.4535951633648	108.37	1.6336	109.13	108.51	110.14	0.75436					50	31	2	0	0	0	0.972	1	41248	41248		8.5933	0.68312	1	1741700			17221	8375	12460	12554	16860	16860					0.02770897988852994
GKCGKKTK	8	Unmodified	_GKCGKKTK_					0	0	0			REV__ENSG00000188878|ENST00000636174|FBF1	REV__ENSG00000188878|ENST00000636174|FBF1	MULTI-MSMS	A375_MHC_IP_R2	2	849.8964233398438	1	849.497484	848.490207	-0.48402	-0.00041117	3.9772	0.0033786	3.4932	0.0029675	849.4972850558079	146.69	0.36032	146.71	146.67	147.03	0.019913					58	37	3	0	0	0	0.77844	1	57136	57136		0.6015	0.6015	1	224630	+		17222	22121	12461	12555	16861	16861					0.05990166090816729
GKDNKPKIY	9	Unmodified	_GKDNKPKIY_					0	0	0		nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	MULTI-MSMS	A375_MHC_IP_R1	1	355.6012878417969	3	354.869591	1061.58694	-0.045414	-1.6116E-05	-1.216	-0.00043152	-1.2614	-0.00044763	354.86949981445997	25.229	1.1149	25.229	24.953	26.068	0					83	21	5	0	0	0	0.59266	1	7540	7540		15.248	4.3495	1	603810000			17223	7623	12462	12556	16862	16862					0.05861431851622001
GKECDTEPCE	10	Unmodified	_GKECDTEPCE_					0	0	0			REV__nc|ENSG00000152778|Q13325-2|IFIT5	REV__nc|ENSG00000152778|Q13325-2|IFIT5	MSMS	A375_MHC_IP_R2	2	555.708251953125	2	555.707539	1109.40053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.04	1	19.643	19.143	20.143	0.60308								0	0	0	0.15541	1	5788	5788		3.2813	0.39209	1		+		17224	19816	12463	12557	16863	16863					-0.1497992116135265
GKEFKEGHSY	10	Unmodified	_GKEFKEGHSY_					0	0	0		nc|ENSG00000169242|P20827-2|EFNA1;ENST00000474413.5_1_1:155102304-155106540:+|nuORF;ENST00000497282.1_1_1:155103761-155106540:+|nuORF;ENSG00000169242|ENST00000368407|EFNA1;ENST00000469878.5_1_1:155100369-155106166:+|nuORF	nc|ENSG00000169242|P20827-2|EFNA1	nc|ENSG00000169242|P20827-2|EFNA1	MULTI-MSMS	A375_MHC_IP_R1	1	591.6825561523438	2	591.28292	1180.55129	0.055419	3.2768E-05	-0.21949	-0.00012978	-0.16407	-9.7012E-05	591.2827183922994	49.109	2.1244	49.109	47.467	49.591	0					75	41	2	0	0	0	0.62155	1	17327	17327		19.257	0.88389	1	3854300			17225	7394	12464	12558	16864	16864					-0.03176650396039804
GKEGSIFLV	9	Unmodified	_GKEGSIFLV_					0	0	0		nc|ENSG00000116833|O00482-4|NR5A2;nc|ENSG00000116833|O00482-2|NR5A2;ENSG00000116833|ENST00000367362|NR5A2;nc|ENSG00000116833|O00482-3|NR5A2	nc|ENSG00000116833|O00482-4|NR5A2	nc|ENSG00000116833|O00482-4|NR5A2	MULTI-SECPEP	A375_MHC_IP_R1	1	949.2146606445312	1	949.535309	948.528032	0.49322	0.00046833	2.3323	0.0022146	2.8255	0.0026829	949.5342190447195	126.91	0.20225	126.91	126.76	126.96	0					5	3	2	0	0	0	0.63327	1	48489	48489		13.042	0	1	8875400			17226	3437	12465	12559	16865	16865					0.05170955557287016
GKEKKEKAF	9	Unmodified	_GKEKKEKAF_					0	0	0		ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11;ANKRD11|p.A1681Efs*5|1|0.79|ENSG00000167522|chr16:89281500-89281500|G/-|frameshift_variant;ANKRD11|p.T1707Rfs*12|1|0.86|ENSG00000167522|chr16:89281424-89281424|A/-|frameshift_variant	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	355.9412841796875	3	355.541475	1063.60259	0.28152	0.00010009	-0.35928	-0.00012774	-0.077758	-2.7646E-05	355.54127147546876	44.344	0.46034	44.344	44.216	44.676	0					14	8	2	0	0	0	0.67152	1	15497	15497		9.544	0	1	2951600			17227	7188	12466	12560	16866	16866					0.07333718368636255
GKEKKEKAF	9	Unmodified	_GKEKKEKAF_					0	0	0		ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11;ANKRD11|p.A1681Efs*5|1|0.79|ENSG00000167522|chr16:89281500-89281500|G/-|frameshift_variant;ANKRD11|p.T1707Rfs*12|1|0.86|ENSG00000167522|chr16:89281424-89281424|A/-|frameshift_variant	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	355.4603271484375	3	355.541475	1063.60259	-0.058305	-2.073E-05	-0.048751	-1.7333E-05	-0.10706	-3.8063E-05	355.54136903227027	43.482	0.50501	44.255	44.028	44.533	0.7724					18	9	3	0	0	0	0.69884	1	16204	16204		7.1017	0.90987	1	2442500			17228	7188	12466	12560	16867	16867					0.07333718368636255
GKERERDRQ	9	Unmodified	_GKERERDRQ_					0	0	0		ENSG00000132680|ENST00000368321|KHDC4;nc|ENSG00000132680|Q7Z7F0-2|KHDC4	ENSG00000132680|ENST00000368321|KHDC4	ENSG00000132680|ENST00000368321|KHDC4	MULTI-SECPEP	A375_MHC_IP_R2	2	391.5961608886719	3	391.874287	1172.60103	-0.038957	-1.5266E-05	-0.34424	-0.0001349	-0.3832	-0.00015017	392.2083018270537	43.331	0.35572	44.103	43.977	44.333	0.7724					9	6	2	0	0	0	0.56537	1	16111	16111		16.566	1.728	1	1322000			17229	4439	12467	12561	16868	16868					0.0216347733260136
GKGASVVR	8	Unmodified	_GKGASVVR_					0	0	0			REV__tr|U7T685|U7T685_FUSNUButyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00148PE=3SV=1	REV__tr|U7T685|U7T685_FUSNUButyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00148PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	774.4380493164062	1	773.462813	772.455536	-1.0142	-0.00078446	-2.5865	-0.0020005	-3.6007	-0.002785	773.4608088722686	123.89	0.20409	123.89	123.74	123.94	0					6	3	2	0	0	0	0.77515	1	46399	46399		12.532	3.9383	1	11138000	+		17230	28858	12468	12562	16869	16869					0.060206662743780726
GKGCSASC	8	Unmodified	_GKGCSASC_					0	0	0			REV__ADAMTS20|p.S1840Rfs*14|1|0.32|ENSG00000173157|chr12:43369308-43369309|-/CTGTAGCAAT|frameshift_variant	REV__ADAMTS20|p.S1840Rfs*14|1|0.32|ENSG00000173157|chr12:43369308-43369309|-/CTGTAGCAAT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	357.04132080078125	2	356.641274	711.267995	-0.27046	-9.6457E-05	0.80501	0.0002871	0.53455	0.00019064	356.6415448707601	127.93	0.35419	128.2	128.02	128.37	0.26592					10	6	2	0	0	0	0.972	1	50242	50242		0.69038	0.69038	1	13938000	+		17231	15324	12469	12563	16870	16870					-0.09918856316869551
GKGFSRSSNL	10	Unmodified	_GKGFSRSSNL_					0	0	0		nc|ENSG00000197037|Q6NSZ9-3|ZSCAN25;nc|ENSG00000197037|Q6NSZ9-2|ZSCAN25;ENSG00000197037|ENST00000394152|ZSCAN25	nc|ENSG00000197037|Q6NSZ9-3|ZSCAN25	nc|ENSG00000197037|Q6NSZ9-3|ZSCAN25	MULTI-SECPEP	A375_MHC_IP_R2	2	352.2416076660156	3	351.520962	1051.54106	-0.66761	-0.00023468	0.056659	1.9917E-05	-0.61095	-0.00021476	351.8553079240951	25.222	0.40869	25.865	25.719	26.128	0.64368					13	7	3	0	0	0	0.81532	1	8468	8468		17.049	7.2843	1	2965300			17232	9107	12470	12564	16871	16871					0.017347866693853575
GKGGSLHR	8	Unmodified	_GKGGSLHR_					0	0	0		ENST00000317506.7_1_16:67758723-67758927:-|nuORF	ENST00000317506.7_1_16:67758723-67758927:-|nuORF	ENST00000317506.7_1_16:67758723-67758927:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	406.6300964355469	2	406.230294	810.446034	-0.30267	-0.00012295	0.48296	0.00019619	0.18029	7.324E-05	406.23040845952806	99.433	2.4848	99.433	97.44	99.925	0					96	48	3	0	0	0	0.77804	1	36258	36258		2.0598	1.2661	1	4611700			17233	10668	12471	12565	16872	16872					0.033228979888349386
GKGKCFALGLD	11	Unmodified	_GKGKCFALGLD_					0	0	0		ENST00000310421.4_1_8:67579243-67579318:-|nuORF	ENST00000310421.4_1_8:67579243-67579318:-|nuORF	ENST00000310421.4_1_8:67579243-67579318:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	370.62939453125	3	370.198831	1107.57467	0.315	0.00011661	-0.48714	-0.00018034	-0.17215	-6.3728E-05	370.5333498916187	31.656	0.50523	32.393	32.249	32.755	0.73691					15	9	2	0	0	0	0.99424	1	11313	11313		1.0136	0.4504	1	1262300			17234	10620	12472	12566	16873	16873					0.025180721169135722
GKGQGGSG	8	Unmodified	_GKGQGGSG_					0	0	0			REV__ENSG00000188779|ENST00000380035|SKOR1	REV__ENSG00000188779|ENST00000380035|SKOR1	MULTI-SECPEP	A375_MHC_IP_R1	1	647.6939086914062	1	647.310729	646.303452	-0.55691	-0.00036049	-4.2676	-0.0027625	-4.8245	-0.003123	647.3083245862547	91.038	0.15196	91.038	90.946	91.098	0					4	2	2	0	0	0	0.972	1	33421	33421		0.52476	0.066424	1	675280	+		17235	22112	12473	12567	16874	16874					-0.03384734473183926
GKGSFLVL	8	Unmodified	_GKGSFLVL_					0	0	0		ENST00000484202.2_1_1:249104668-249104800:-|nuORF	ENST00000484202.2_1_1:249104668-249104800:-|nuORF	ENST00000484202.2_1_1:249104668-249104800:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	820.8878784179688	1	820.492716	819.485439	-1.0034	-0.00082329	-1.7046	-0.0013986	-2.708	-0.0022219	820.4908793117943	123.61	0.20076	123.61	123.54	123.74	0					5	3	2	0	0	0	0.972	1	46257	46257		7.9102	0	1	14131000			17236	12556	12474	12568	16875	16875					0.0684760521970702
GKGTWMTCYV	10	Unmodified	_GKGTWMTCYV_					0	0	0		ENSG00000146477|ENST00000275300|SLC22A3	ENSG00000146477|ENST00000275300|SLC22A3	ENSG00000146477|ENST00000275300|SLC22A3	MULTI-MSMS	A375_MHC_IP_R2	2	1145.4888916015625	1	1145.51181	1144.50454	0.32115	0.00036788	1.4358	0.0016448	1.757	0.0020126	1145.512809358399	111.2	0.56427	111.94	111.65	112.21	0.73692					21	10	3	0	0	0	0.71361	1	41940	41940		6.2058	0.9089	1	4244000			17237	5627	12475	12569	16876	16876					-0.061935495431953314
GKGYIIQKR	9	Unmodified	_GKGYIIQKR_					0	0	0		nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	nc|ENSG00000165525|O60524-4|NEMF	nc|ENSG00000165525|O60524-4|NEMF	MSMS	A375_MHC_IP_R2	2	354.9414367675781	3	354.885464	1061.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.451	1	46.216	45.716	46.716	0.76519								0	0	0	0.15486	1	16990	16990		2.2828	0.80087	1				17238	6964	12476	12570	16877	16877					0.10621130842469029
GKHHKELQK	9	Unmodified	_GKHHKELQK_					0	0	0		ENST00000496188.1_1_X:15792412-15793509:+|nuORF;ENSG00000169239|ENST00000318636|CA5B	ENST00000496188.1_1_X:15792412-15793509:+|nuORF	ENST00000496188.1_1_X:15792412-15793509:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	368.29278564453125	3	368.880602	1103.61998	-0.0068349	-2.5213E-06	-0.66911	-0.00024682	-0.67595	-0.00024934	368.880371023027	24.086	0.35656	24.73	24.55	24.907	0.64368					8	6	2	0	0	0	0.78719	1	7797	7797		8.9762	0.22446	1	2186800			17239	12720	12477	12571	16878	16878					0.07231058694310377
GKHVSFYKL	9	Unmodified	_GKHVSFYKL_					0	0	0			REV__ENSG00000140527|ENST00000268130|WDR93	REV__ENSG00000140527|ENST00000268130|WDR93	MULTI-MSMS	A375_MHC_IP_R2	2	360.6060485839844	3	360.206315	1077.59712	-0.049946	-1.7991E-05	0.050107	1.8049E-05	0.00016095	5.7976E-08	360.20631882312864	46.554	0.45842	47.319	47.159	47.617	0.76519					13	8	2	0	0	0	0.48411	1	17482	17482		20.581	3.468	1	1666200	+		17240	19221	12478	12572	16879	16879					0.06142039576843672
GKHVSFYKL	9	Unmodified	_GKHVSFYKL_					0	0	0			REV__ENSG00000140527|ENST00000268130|WDR93	REV__ENSG00000140527|ENST00000268130|WDR93	MULTI-SECPEP	A375_MHC_IP_R2	2	359.88275146484375	3	360.206315	1077.59712	-0.049946	-1.7991E-05	0.050107	1.8049E-05	0.00016095	5.7976E-08	360.20631882312864	46.554	0.45842	47.319	47.159	47.617	0.76519					13	8	2	0	0	0	0.74597	1	17486	17486		12.175	6.4429	1	1666200	+		17241	19221	12478	12572	16880	16880					0.06142039576843672
GKHVSFYKL	9	Unmodified	_GKHVSFYKL_					0	0	0			REV__ENSG00000140527|ENST00000268130|WDR93	REV__ENSG00000140527|ENST00000268130|WDR93	MULTI-MATCH	A375_MHC_IP_R1	1		3	360.206315	1077.59712	0.1563	5.63E-05	-0.084078	-3.0285E-05	0.07222	2.6014E-05	360.2062772356909	47.442	0.45543	47.442	47.263	47.718	0	0.061222	-5.4952E-05	NaN	20.581	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2393000	+		17242	19221	12478	12572							0.06142039576843672
GKKGIIFRHL	10	Unmodified	_GKKGIIFRHL_					0	0	0			REV__nc|ENSG00000115677|Q00341-2|HDLBP	REV__nc|ENSG00000115677|Q00341-2|HDLBP	MSMS	A375_MHC_IP_R1	1	390.3076477050781	3	390.248625	1167.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.944	1	52.944	52.444	53.444	0								0	0	0	0.15267	1	18853	18853		12.175	4.0192	1		+		17243	17905	12479	12573	16881	16881					0.1468938552184227
GKKHIKAAI	9	Unmodified	_GKKHIKAAI_					0	0	0			REV__ENSG00000171049|ENST00000340023|FPR2	REV__ENSG00000171049|ENST00000340023|FPR2	MULTI-MSMS	A375_MHC_IP_R2	2	484.21795654296875	2	483.316369	964.618185	-0.39474	-0.00019078	-0.16567	-8.0069E-05	-0.5604	-0.00027085	483.3161101845433	147.79	0.27371	147.81	147.71	147.98	0.018692					38	17	3	0	0	0	0.77827	1	57435	57435		0	0	1	265710	+		17244	21039	12480	12574	16882	16882					0.13446049676338134
GKLIGFAQ	8	Unmodified	_GKLIGFAQ_					0	0	0		ENSG00000172939|ENST00000311806|OXSR1	ENSG00000172939|ENST00000311806|OXSR1	ENSG00000172939|ENST00000311806|OXSR1	MULTI-MSMS	A375_MHC_IP_R1	1	417.14788818359375	2	417.247621	832.480688	0.24988	0.00010426	0.30245	0.0001262	0.55232	0.00023046	417.247712333348	50.89	1.1146	50.89	50.51	51.625	0					44	21	4	0	0	0	0.75805	1	18185	18185		18.135	0	1	49121000			17245	7749	12481	12575	16883	16883					0.05774721076943479
GKLIIPPV	8	Unmodified	_GKLIIPPV_					0	0	0		ENSG00000148429|ENST00000609104|USP6NL;nc|ENSG00000148429|Q92738-2|USP6NL;chr10:11527567-11532178|412|14.69|0.4|5.19|-|ENST00000277575|USP6NL,USP6NL	ENSG00000148429|ENST00000609104|USP6NL	ENSG00000148429|ENST00000609104|USP6NL	MULTI-SECPEP	A375_MHC_IP_R2	2	836.8167114257812	1	836.560401	835.553125	-0.70832	-0.00059255	-0.56523	-0.00047285	-1.2735	-0.0010654	836.5596486788465	120.22	0.30384	120.75	120.55	120.85	0.5321					6	5	2	0	0	0	0.972	1	45816	45816		0.69038	0	1	19016000			17246	396	12482	12576	16884	16884					0.12877055150511296
GKPAGALF	8	Unmodified	_GKPAGALF_					0	0	0			REV__ENSG00000116981|ENST00000235628|NT5C1A	REV__ENSG00000116981|ENST00000235628|NT5C1A	MULTI-MSMS	A375_MHC_IP_R1	1	381.12152099609375	2	380.721239	759.427924	0.13997	5.329E-05	0.37587	0.0001431	0.51585	0.00019639	380.7213112380652	66.545	0.56055	66.545	66.224	66.785	0					17	10	2	0	0	0	0.77603	1	24099	24099		9.3474	0	1	1057800	+		17247	17983	12483	12577	16885	16885					0.03858763014147826
GKPAGALF	8	Unmodified	_GKPAGALF_					0	0	0			REV__ENSG00000116981|ENST00000235628|NT5C1A	REV__ENSG00000116981|ENST00000235628|NT5C1A	MULTI-SECPEP	A375_MHC_IP_R2	2	381.1214599609375	2	380.721239	759.427924	-0.14063	-5.3541E-05	0.40557	0.00015441	0.26493	0.00010087	380.7213172294011	65.459	0.5574	66.197	65.917	66.475	0.73811					19	10	2	0	0	0	0.97144	1	24814	24814		14.582	0	1	1414400	+		17248	17983	12483	12577	16886	16886					0.03858763014147826
GKPAGALF	8	Unmodified	_GKPAGALF_					0	0	0			REV__ENSG00000116981|ENST00000235628|NT5C1A	REV__ENSG00000116981|ENST00000235628|NT5C1A	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	380.721239	759.427924	0.13997	5.329E-05	0.37587	0.0001431	0.51585	0.00019639	380.7213112380652	66.545	0.56055	66.545	66.224	66.785	0	0.17398	-1.024E-05	NaN	9.3474	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1057800	+		17249	17983	12483	12577							0.03858763014147826
GKPGIVLD	8	Unmodified	_GKPGIVLD_					0	0	0			REV__nc|ENSG00000120899|Q14289-2|PTK2B	REV__nc|ENSG00000120899|Q14289-2|PTK2B	MSMS	A375_MHC_IP_R1	1	400.1376647949219	2	399.739628	797.464704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.1	1	124.1	123.6	124.6	0								0	0	0	0.16876	1	46580	46580		5.2307	0	1		+		17250	18139	12484	12578	16887	16887					0.057870148400297694
GKPGKAGRE	9	Unmodified	_GKPGKAGRE_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	A375_MHC_IP_R1	1	450.656494140625	2	450.256508	898.498464	0.05282	2.3783E-05	-0.0045685	-2.057E-06	0.048252	2.1726E-05	450.2564544766975	109.39	2.6946	109.39	108.26	110.95	0					133	52	3	0	0	0	0.74157	1	40670	40670		3.2813	0	1	13356000	+		17251	20509	12485	12579	16888	16888					0.045154363318033575
GKPGKPTKY	9	Unmodified	_GKPGKPTKY_					0	0	0			REV__nc|ENSG00000021762|Q9H0X9-3|OSBPL5	REV__nc|ENSG00000021762|Q9H0X9-3|OSBPL5	MSMS	A375_MHC_IP_R1	1	488.19085693359375	2	488.284734	974.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.95	1	114.95	114.45	115.45	0								0	0	0	0.15486	1	42154	42154		10.074	3.3508	1		+		17252	27094	12486	12580	16889	16889					0.06662064168460802
GKPHLMKRI	9	Unmodified	_GKPHLMKRI_					0	0	0		ENSG00000230453|ENST00000684830|ANKRD18B;ENST00000458155.1_1:143398846-143398954:+|nuORF	ENSG00000230453|ENST00000684830|ANKRD18B	ENSG00000230453|ENST00000684830|ANKRD18B	MSMS	A375_MHC_IP_R1	1	540.3846435546875	2	540.328953	1078.64335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.07	1	141.07	140.57	141.57	0								0	0	0	0.15486	1	54160	54160		0.52476	0	1				17253	9717	12487	12581	16890	16890					0.107177812072905
GKPKRIQL	8	Unmodified	_GKPKRIQL_					0	0	0			REV__LIN28B|p.K121I|1|0.34|ENSG00000187772|chr6:105026461-105026461|A/T|missense_variant	REV__LIN28B|p.K121I|1|0.34|ENSG00000187772|chr6:105026461-105026461|A/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	470.7084045410156	2	470.308544	938.602535	-0.40828	-0.00019202	0.51176	0.00024068	0.10347	4.8664E-05	470.30902734689016	143.32	0.35432	143.35	143.13	143.49	0.024414					9	6	2	0	0	0	0.77797	1	56029	56029		2.3027	0	1	635240	+		17254	26929	12488	12582	16891	16891					0.13077763159321876
GKPLHAPA	8	Unmodified	_GKPLHAPA_					0	0	0		nc|ENSG00000203993|Q9H2J1|ARRDC1-AS1;ENST00000371417.3_1_9:140510123-140512388:-|nuORF	nc|ENSG00000203993|Q9H2J1|ARRDC1-AS1	nc|ENSG00000203993|Q9H2J1|ARRDC1-AS1	MSMS	A375_MHC_IP_R2	2	395.62750244140625	2	395.732138	789.449723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.34	1	57.09	56.59	57.59	0.75015								0	0	0	0.16876	1	21295	21295		4.756	1.8668	1				17255	11174	12489	12583	16892	16892					0.046575677626947254
GKPPHMPH	8	Unmodified	_GKPPHMPH_					0	0	0			REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	MULTI-SECPEP	A375_MHC_IP_R2	2	900.5711669921875	1	900.450868	899.443591	-0.43399	-0.00039078	-2.7025	-0.0024334	-3.1365	-0.0028242	900.447707182039	122.33	0.30433	122.71	122.62	122.92	0.37661					6	5	2	0	0	0	0.972	1	46887	46887		4.756	0	1	30570000	+		17256	17937	12490	12584	16893	16893					-0.010152737404723666
GKPQPVMV	8	Unmodified	_GKPQPVMV_					0	0	0		ENST00000537140.5_1_11:115040311-115375169:-|nuORF;nc|ENSG00000182985|Q9BY67-5|CADM1;nc|ENSG00000182985|Q9BY67|CADM1;nc|ENSG00000182985|Q9BY67-4|CADM1;ENSG00000182985|ENST00000331581|CADM1;nc|ENSG00000182985|Q9BY67-2|CADM1	ENST00000537140.5_1_11:115040311-115375169:-|nuORF	ENST00000537140.5_1_11:115040311-115375169:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	428.6408996582031	2	428.241481	854.468409	-0.052273	-2.2386E-05	-0.23584	-0.000101	-0.28811	-0.00012338	428.24059142816776	85.294	1.1225	86.03	85.472	86.595	0.73601					47	21	3	0	0	0	0.7779	1	32407	32407		2.5775	0.51773	1	2509700			17257	8453	12491	12585	16894	16894					0.03535361342255783
GKPQQKWKKNR	11	Unmodified	_GKPQQKWKKNR_					0	0	0		ENST00000216160.10_1_22:39827477-39827837:+|nuORF	ENST00000216160.10_1_22:39827477-39827837:+|nuORF	ENST00000216160.10_1_22:39827477-39827837:+|nuORF	MSMS	A375_MHC_IP_R1	1	699.464111328125	2	699.409852	1396.80515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.17	1	141.17	140.67	141.67	0								0	0	0	0.16337	1	54196	54196		1.1933	0.88631	1				17258	10091	12492	12586	16895	16895					0.12262041493909237
GKPSHLRG	8	Unmodified	_GKPSHLRG_					0	0	0		ENSG00000198003|ENST00000356392|ODAD3	ENSG00000198003|ENST00000356392|ODAD3	ENSG00000198003|ENST00000356392|ODAD3	MULTI-MSMS	A375_MHC_IP_R2	2	426.64556884765625	2	426.245944	850.477334	-0.17846	-7.6066E-05	0.12806	5.4585E-05	-0.050395	-2.1481E-05	426.24592989023455	122.77	2.2284	123.15	122.57	124.8	0.3766					84	43	3	0	0	0	0.7766	1	46997	46997		7.2892	0	1	260100000			17259	9221	12493	12587	16896	16896					0.046114710229517186
GKPTANIE	8	Unmodified	_GKPTANIE_					0	0	0			REV__ENSG00000109920|ENST00000263773|FNBP4	REV__ENSG00000109920|ENST00000263773|FNBP4	MULTI-MSMS	A375_MHC_IP_R1	1	415.6243591308594	2	415.224342	828.434132	0.41556	0.00017255	-0.59837	-0.00024846	-0.18281	-7.5907E-05	415.22400910623855	118.07	0.50736	118.07	117.76	118.27	0					20	9	3	0	0	0	0.77752	1	43393	43393		3.9444	0	1	6541300	+		17260	17603	12494	12588	16897	16897					0.013052364549821505
GKPTANIE	8	Unmodified	_GKPTANIE_					0	0	0			REV__ENSG00000109920|ENST00000263773|FNBP4	REV__ENSG00000109920|ENST00000263773|FNBP4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	415.224342	828.434132	0.41556	0.00017255	-0.59837	-0.00024846	-0.18281	-7.5907E-05	415.22400910623855	118.07	0.50736	118.07	117.76	118.27	0	-0.040471	0.00055401	NaN	3.9444	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6541300	+		17261	17603	12494	12588							0.013052364549821505
GKPTANIE	8	Unmodified	_GKPTANIE_					0	0	0			REV__ENSG00000109920|ENST00000263773|FNBP4	REV__ENSG00000109920|ENST00000263773|FNBP4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	415.224342	828.434132	0.11286	4.686E-05	-1.4265	-0.00059233	-1.3137	-0.00054547	415.2236328074646	117.49	0.80885	118.15	117.79	118.59	0.65961	0.040471	-0.00013374	NaN	3.9444	24	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20488000	+		17262	17603	12494	12588							0.013052364549821505
GKQALETF	8	Unmodified	_GKQALETF_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	A375_MHC_IP_R1	1	447.64013671875	2	447.239993	892.465432	-0.078022	-3.4895E-05	0.23968	0.00010719	0.16165	7.2298E-05	447.24017265059683	52.296	0.55763	52.296	52.085	52.643	0					15	10	2	0	0	0	0.7256	1	18592	18592		26.884	3.7352	1	2910700	+		17263	17711	12495	12589	16898	16898					0.014898094890895663
GKQALETF	8	Unmodified	_GKQALETF_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	A375_MHC_IP_R2	2	447.6395263671875	2	447.239993	892.465432	-0.55193	-0.00024684	-0.1005	-4.4949E-05	-0.65243	-0.00029179	447.23993579399684	51.458	0.50777	52.21	51.966	52.473	0.75225					17	9	2	0	0	0	0.7256	1	19371	19371		26.884	3.7352	1	1868000	+		17264	17711	12495	12589	16899	16899					0.014898094890895663
GKQALETF	8	Unmodified	_GKQALETF_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	447.239993	892.465432	-0.078022	-3.4895E-05	0.23968	0.00010719	0.16165	7.2298E-05	447.24017265059683	52.296	0.55763	52.296	52.085	52.643	0	0.042958	0.00011419	NaN	26.884	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2910700	+		17265	17711	12495	12589							0.014898094890895663
GKQALETF	8	Unmodified	_GKQALETF_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	447.239993	892.465432	-0.55193	-0.00024684	-0.1005	-4.4949E-05	-0.65243	-0.00029179	447.23993579399684	51.458	0.50777	52.21	51.966	52.473	0.75225	-0.042958	-0.0001901	NaN	26.884	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1868000	+		17266	17711	12495	12589							0.014898094890895663
GKQKRHHKPRR	11	Unmodified	_GKQKRHHKPRR_					0	0	0		ENST00000424363.5_1_7:22534421-22534983:-|nuORF	ENST00000424363.5_1_7:22534421-22534983:-|nuORF	ENST00000424363.5_1_7:22534421-22534983:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	714.8311157226562	2	714.431984	1426.84942	-0.93853	-0.00067052	0.7436	0.00053125	-0.19494	-0.00013927	714.4323812392118	142.49	1.0635	142.49	141.78	142.84	0					37	20	3	0	0	0	0.73902	1	54485	54485		0.30703	0.30703	1	3049200			17267	11772	12496	12590	16900	16900					0.1530649043077119
GKSEKPIGQY	10	Unmodified	_GKSEKPIGQY_					0	0	0			REV__ENST00000357776.6_2_17:42977098-42978910:+|nuORF	REV__ENST00000357776.6_2_17:42977098-42978910:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	553.2056884765625	2	553.795663	1105.57677	-0.43503	-0.00024092	1.8457	0.0010221	1.4107	0.00078122	553.7969653460999	62.719	0.46137	62.719	62.351	62.813	0					10	8	2	0	0	0	0.91516	1	22588	22588		15.248	7.6395	1	863680	+		17268	23849	12497	12591	16901	16901					0.028208241263882883
GKSKGGKKKGS	11	Unmodified	_GKSKGGKKKGS_					0	0	0		ENSG00000197616|ENST00000405093|MYH6	ENSG00000197616|ENST00000405093|MYH6	ENSG00000197616|ENST00000405093|MYH6	MSMS	A375_MHC_IP_R1	1	354.613525390625	3	354.552374	1060.63529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.262	1	20.262	19.762	20.762	0								0	0	0	0.16285	1	5173	5173		1.7824	0.19014	1				17269	9180	12498	12592	16902	16902					0.10739925491520808
GKSLYHQY	8	Unmodified	_GKSLYHQY_					0	0	0		nc|ENSG00000137968|Q8NCS7|SLC44A5;nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5;SLC44A5|p.P454S|1|0.12|ENSG00000137968|chr1:75218659-75218659|G/A|missense_variant	nc|ENSG00000137968|Q8NCS7|SLC44A5	nc|ENSG00000137968|Q8NCS7|SLC44A5	MSMS	A375_MHC_IP_R2	2	498.1510925292969	2	498.250892	994.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.337	1	24.98	24.48	25.48	0.64368								0	0	0	0.16876	1	7978	7978		12.532	2.4576	1				17270	14630	12499	12593	16903	16903					-0.010233857623461518
GKSTKKKKKKV	11	Unmodified	_GKSTKKKKKKV_					0	0	0			REV__CDCP1|p.N699S|1|0.36|ENSG00000163814|chr3:45086053-45086053|T/C|missense_variant	REV__CDCP1|p.N699S|1|0.36|ENSG00000163814|chr3:45086053-45086053|T/C|missense_variant	MSMS	A375_MHC_IP_R2	2	630.828369140625	2	630.429722	1258.84489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.4218	1	2.8808	2.3808	3.3808	0.45901								0	0	0	0.1636	1	784	784		0	0	1		+		17271	15619	12500	12594	16904	16904					0.2258216844461458
GKTFFKRAIL	10	Unmodified	_GKTFFKRAIL_					0	0	0		ENSG00000198185|ENST00000692313|ZNF334	ENSG00000198185|ENST00000692313|ZNF334	ENSG00000198185|ENST00000692313|ZNF334	MSMS	A375_MHC_IP_R2	2	394.2850036621094	3	394.244881	1179.71281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.602	1	64.343	63.843	64.843	0.74022								0	0	0	0.15306	1	24117	24117		10.899	3.4219	1				17272	9239	12501	12595	16905	16905					0.13014563427714165
GKTIERCFI	9	Unmodified	_GKTIERCFI_					0	0	0		ENST00000336314.8_2_5:154194204-154194450:+|nuORF	ENST00000336314.8_2_5:154194204-154194450:+|nuORF	ENST00000336314.8_2_5:154194204-154194450:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	533.6875610351562	2	533.789327	1065.5641	-1.0733	-0.00057291	0.9712	0.00051841	-0.10209	-5.4497E-05	533.7900215990569	23.264	0.3051	23.894	23.623	23.928	0.63014					6	5	2	0	0	0	0.67332	1	7469	7469		9.3831	0.78985	1	2057700			17273	10814	12502	12596	16906	16906					0.03394089462494776
GKTVDFNYRLF	11	Unmodified	_GKTVDFNYRLF_					0	0	0			REV__ENST00000461051.1_1_20:33463718-33470793:+|nuORF	REV__ENST00000461051.1_1_20:33463718-33470793:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	453.64532470703125	3	453.906705	1358.69829	-0.90005	-0.00040854	3.1285	0.0014201	2.2285	0.0010115	453.9088086133033	29.579	0.35309	30.278	30.032	30.385	0.69872					10	6	2	0	0	0	0.99548	1	10252	10252		8.7518	4.3456	1	2045800	+		17274	18587	12503	12597	16907	16907					0.03328446488899317
GKVRKWKMRRN	11	Unmodified	_GKVRKWKMRRN_					0	0	0			REV__nc|ENSG00000005102|P50221-3|MEOX1	REV__nc|ENSG00000005102|P50221-3|MEOX1	MULTI-MSMS	A375_MHC_IP_R1	1	731.3348999023438	2	729.932971	1457.85139	-0.90881	-0.00066337	1.362	0.00099417	0.45319	0.0003308	730.9365002641069	143.64	0.44113	143.64	143.39	143.84	0					15	8	3	0	0	0	0.73924	1	55157	55157		0	0	1	534960	+		17275	16112	12504	12598	16908	16908					0.14077783124344023
GKYVYFTI	8	Unmodified	_GKYVYFTI_					0	0	0		ENSG00000181649|ENST00000314222|PHLDA2	ENSG00000181649|ENST00000314222|PHLDA2	ENSG00000181649|ENST00000314222|PHLDA2	MSMS	A375_MHC_IP_R2	2	495.72332763671875	2	495.768386	989.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.606	1	83.349	82.849	83.849	0.74293								0	0	0	0.16876	1	31380	31380		19.439	6.9074	1				17276	8356	12505	12599	16909	16909					0.027038570456284106
GKYYKEYW	8	Unmodified	_GKYYKEYW_					0	0	0			REV__RBBP6|p.E1056Nfs*55|1|0.28|ENSG00000122257|chr16:24569855-24569855|T/-|frameshift_variant	REV__RBBP6|p.E1056Nfs*55|1|0.28|ENSG00000122257|chr16:24569855-24569855|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	379.1524658203125	3	379.518559	1135.53385	-0.067281	-2.5535E-05	4.3058	0.0016341	4.2385	0.0016086	379.519754719569	41.5	0.50714	42.274	41.946	42.453	0.77451					11	9	2	0	0	0	0.972	1	15355	15355		0.40072	0	1	1228500	+		17277	18198	12506	12600	16910	16910					-0.02849945931052389
GLAAGGIVAV	10	Unmodified	_GLAAGGIVAV_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;ENSG00000186260|ENST00000571589|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	A375_MHC_IP_R1	1	414.65289306640625	2	414.252903	826.491253	0.34474	0.00014281	-0.38284	-0.00015859	-0.038097	-1.5782E-05	414.2527044614394	87.952	0.45813	87.952	87.747	88.205	0					14	8	2	0	0	0	0.19587	1	32290	32290		49.669	9.2203	1	3133000			17278	8736	12507	12601	16911	16911					0.07106703731369635
GLAAGGIVAV	10	Unmodified	_GLAAGGIVAV_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;ENSG00000186260|ENST00000571589|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	A375_MHC_IP_R2	2	827.09130859375	1	827.498529	826.491253	-0.67051	-0.00055485	0.23378	0.00019345	-0.43674	-0.0003614	827.4986152385364	87.089	0.96099	87.822	87.458	88.419	0.733					43	18	4	0	0	0	0.010968	1	33116	33116		110.56	27.621	1	38706000			17279	8736	12507	12601	16912	16912					0.07106703731369635
GLAAGGIVAV	10	Unmodified	_GLAAGGIVAV_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;ENSG00000186260|ENST00000571589|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MATCH	A375_MHC_IP_R1	1		1	827.498529	826.491253	-0.3451	-0.00028557	0.0030051	2.4867E-06	-0.34209	-0.00028308	827.4984704423891	87.961	1.0193	87.961	87.644	88.663	0	0.069679	-0.00010421	NaN	110.56	44	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40712000			17280	8736	12507	12601							0.07106703731369635
GLAAGGIVAV	10	Unmodified	_GLAAGGIVAV_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;ENSG00000186260|ENST00000571589|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	414.252903	826.491253	0.12216	5.0604E-05	-0.13175	-5.4578E-05	-0.0095937	-3.9742E-06	414.2528047275837	87.075	0.55793	87.808	87.509	88.067	0.733	-0.071814	7.6793E-05	NaN	49.669	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2957700			17281	8736	12507	12601							0.07106703731369635
GLAAKKGG	8	Unmodified	_GLAAKKGG_					0	0	0			REV__nc|ENSG00000143322|P42684-4|ABL2	REV__nc|ENSG00000143322|P42684-4|ABL2	MULTI-SECPEP	A375_MHC_IP_R1	1	700.7763061523438	1	701.43045	700.423173	-0.79369	-0.00055672	0.27445	0.00019251	-0.51923	-0.00036421	701.4305732551309	36.82	0.55482	36.82	36.644	37.198	0					15	10	2	0	0	0	0.972	1	12352	12352		2.8892	0	1	2779900	+		17282	19345	12508	12602	16913	16913					0.06097878871389639
GLAAKKGG	8	Unmodified	_GLAAKKGG_					0	0	0			REV__nc|ENSG00000143322|P42684-4|ABL2	REV__nc|ENSG00000143322|P42684-4|ABL2	MULTI-MATCH	A375_MHC_IP_R2	2		1	701.43045	700.423173	-0.85162	-0.00059735	0.021743	1.5251E-05	-0.82988	-0.0005821	701.4303492619872	36.029	0.4085	36.793	36.537	36.946	0.76338	-0.013652	-0.00011304	NaN	2.8892	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2784400	+		17283	19345	12508	12602							0.06097878871389639
GLAALRAGL	9	Unmodified	_GLAALRAGL_					0	0	0		ENST00000269095.8_2_17:41984902-41985106:-|nuORF	ENST00000269095.8_2_17:41984902-41985106:-|nuORF	ENST00000269095.8_2_17:41984902-41985106:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	420.970947265625	2	421.266345	840.518136	0.14543	6.1265E-05	0.56029	0.00023603	0.70572	0.00029729	421.266305577279	62.737	0.4093	62.737	62.557	62.966	0					10	7	2	0	0	0	0.62767	1	22644	22644		11.64	0	1	791500			17284	10365	12509	12603	16914	16914					0.09149812342559471
GLAAQQQG	8	Unmodified	_GLAAQQQG_					0	0	0		nc|ENSG00000140836|Q15911-2|ZFHX3;ENSG00000140836|ENST00000268489|ZFHX3	nc|ENSG00000140836|Q15911-2|ZFHX3	nc|ENSG00000140836|Q15911-2|ZFHX3	MULTI-SECPEP	A375_MHC_IP_R1	1	771.734619140625	1	772.394793	771.387516	-0.82811	-0.00063963	0.97401	0.00075232	0.14589	0.00011269	772.3964007327745	144.49	0.08725	144.49	144.46	144.55	0					4	2	2	0	0	0	0.972	1	55412	55412		0.79363	0	1	347940			17285	5187	12510	12604	16915	16915					-0.007322033762761748
GLAARMSQV	9	Unmodified	_GLAARMSQV_					0	0	0		ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	MULTI-SECPEP	A375_MHC_IP_R2	2	467.1269226074219	2	466.752744	931.490935	-1.0173	-0.00047482	0.13164	6.1443E-05	-0.88565	-0.00041338	466.75260156071386	38.365	0.30378	39.139	38.997	39.3	0.77451					9	5	2	0	0	0	0.27742	1	14144	14144		23.79	4.5328	1	1386800			17286	7245	12511	12605	16916	16916					0.022449607398812077
GLAAVAEL	8	Unmodified	_GLAAVAEL_					0	0	0			REV__ENSG00000143621|ENST00000361891|ILF2	REV__ENSG00000143621|ENST00000361891|ILF2	MULTI-SECPEP	A375_MHC_IP_R2	2	743.0894165039062	1	743.429781	742.422505	-0.72606	-0.00053977	0.37309	0.00027737	-0.35297	-0.0002624	743.4299400130964	84.917	0.35841	85.653	85.422	85.78	0.73601					9	6	2	0	0	0	0.68446	1	32258	32258		28.173	0	1	1771800	+		17287	19372	12512	12606	16917	16917					0.04099039431662277
GLADASLLKKV	11	Unmodified	_GLADASLLKKV_					0	0	0		ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	MULTI-MSMS	A375_MHC_IP_R1	1	372.63262939453125	3	372.23253	1113.67576	0.30945	0.00011519	-0.20773	-7.7325E-05	0.10171	3.7861E-05	372.2323754400998	60.741	0.81499	60.741	60.464	61.279	0					41	15	5	0	0	0	0.63742	1	21857	21857		20.411	9.8834	1	15395000			17288	4258	12513	12607	16918	16918					0.12346847091271229
GLADASLLKKV	11	Unmodified	_GLADASLLKKV_					0	0	0		ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	MULTI-SECPEP	A375_MHC_IP_R1	1	558.2448120117188	2	557.845156	1113.67576	-0.54682	-0.00030504	-0.020543	-1.146E-05	-0.56737	-0.0003165	557.845074646953	60.744	0.56097	60.744	60.514	61.075	0					26	10	4	0	0	0	0.18325	1	21864	21864		83.278	11.57	1	11618000			17289	4258	12513	12607	16919	16919					0.12346847091271229
GLADASLLKKV	11	Unmodified	_GLADASLLKKV_					0	0	0		ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	MULTI-MSMS	A375_MHC_IP_R2	2	372.6324157714844	3	372.23253	1113.67576	0.094577	3.5204E-05	-0.18803	-6.9989E-05	-0.09345	-3.4785E-05	372.23238428274	59.782	0.70926	60.529	60.299	61.008	0.74714					34	13	4	0	0	0	0.43802	1	22622	22622		35.996	8.867	1	15642000			17290	4258	12513	12607	16920	16920					0.12346847091271229
GLADASLLKKV	11	Unmodified	_GLADASLLKKV_					0	0	0		ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	MULTI-SECPEP	A375_MHC_IP_R2	2	558.24462890625	2	557.845156	1113.67576	-1.0988	-0.00061297	0.27397	0.00015283	-0.82484	-0.00046014	557.845277636289	59.812	0.45423	60.559	60.349	60.804	0.74714					21	8	3	0	0	0	0.042435	1	22625	22625		98.73	7.6451	1	7229000			17291	4258	12513	12607	16921	16921					0.12346847091271229
GLADITQQL	9	Unmodified	_GLADITQQL_					0	0	0		CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;nc|ENSG00000167258|Q9NYV4-3|CDK12	CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant	CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	480.1639404296875	2	479.763832	957.513111	-0.3617	-0.00017353	0.22635	0.00010859	-0.13535	-6.4935E-05	479.76390384138256	97.874	0.76057	97.874	97.54	98.3	0					29	14	3	0	0	0	0.008833	1	35926	35926		160.52	52.519	1	6296700			17292	351	12514	12608	16922	16922					0.032654636892857525
GLADITQQL	9	Unmodified	_GLADITQQL_					0	0	0		CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;nc|ENSG00000167258|Q9NYV4-3|CDK12	CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant	CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	480.1630859375	2	479.763832	957.513111	-0.755	-0.00036222	-0.093475	-4.4846E-05	-0.84848	-0.00040707	479.7637561264308	97.091	0.76225	97.847	97.519	98.281	0.75586					31	14	3	0	0	0	0.01091	1	36830	36830		144.35	33.063	1	4910800			17293	351	12514	12608	16923	16923					0.032654636892857525
GLADKVYFL	9	Unmodified	_GLADKVYFL_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-MSMS	A375_MHC_IP_R1	1	513.686279296875	2	513.286943	1024.55933	-0.49507	-0.00025411	-0.64345	-0.00033028	-1.1385	-0.00058439	513.2867732209218	99.85	1.6696	99.85	99.268	100.94	0					81	32	4	0	0	0	0.04447	1	36849	36849		66.457	14.188	1	81372000			17294	1806	12515	12609	16924	16924					0.04803528591378381
GLADKVYFL	9	Unmodified	_GLADKVYFL_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-MSMS	A375_MHC_IP_R2	2	513.6863403320312	2	513.286943	1024.55933	-0.62409	-0.00032034	-0.52142	-0.00026764	-1.1455	-0.00058797	513.2869438491605	98.975	1.6272	99.735	98.995	100.62	0.75977					86	31	5	0	0	0	0.066859	1	37722	37722		57.722	17.765	1	77979000			17295	1806	12515	12609	16925	16925					0.04803528591378381
GLADNTVIAKV	11	Unmodified	_GLADNTVIAKV_					0	0	0		nc|ENSG00000113407|P26639-2|TARS1;ENSG00000113407|ENST00000265112|TARS1	nc|ENSG00000113407|P26639-2|TARS1	nc|ENSG00000113407|P26639-2|TARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	551.1482543945312	2	550.819138	1099.62372	-0.58611	-0.00032284	-0.37063	-0.00020415	-0.95675	-0.000527	550.8190243292612	64.478	0.50799	64.478	64.292	64.8	0					21	9	3	0	0	0	0.75073	1	23310	23310		24.882	14.082	1	3249300			17296	3150	12516	12610	16926	16926					0.07789683677492576
GLADNTVIAKV	11	Unmodified	_GLADNTVIAKV_					0	0	0		nc|ENSG00000113407|P26639-2|TARS1;ENSG00000113407|ENST00000265112|TARS1	nc|ENSG00000113407|P26639-2|TARS1	nc|ENSG00000113407|P26639-2|TARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	551.218994140625	2	550.819138	1099.62372	-0.71827	-0.00039564	-0.11141	-6.1369E-05	-0.82968	-0.000457	550.8190309756674	63.652	0.66042	64.392	64.139	64.8	0.74022					17	7	3	0	0	0	0.0042286	1	24159	24159		108.26	69.647	1	4458300			17297	3150	12516	12610	16927	16927					0.07789683677492576
GLADPSALTQA	11	Unmodified	_GLADPSALTQA_					0	0	0		nc|ENSG00000124535|Q96S55-4|WRNIP1;nc|ENSG00000124535|Q96S55-3|WRNIP1;nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1	nc|ENSG00000124535|Q96S55-4|WRNIP1	nc|ENSG00000124535|Q96S55-4|WRNIP1	MULTI-SECPEP	A375_MHC_IP_R1	1	522.6717529296875	2	522.272021	1042.52949	-0.39622	-0.00020693	1.801	0.00094064	1.4048	0.0007337	522.2719606176189	70.844	1.9871	70.844	69.275	71.262	0					62	38	3	0	0	0	0.012765	1	25783	25783		125.04	64.964	1	8638400			17298	3909	12517	12611	16928	16928					0.009925448553985916
GLADWQDC	8	Unmodified	_GLADWQDC_					0	0	0			REV__nc|ENSG00000130402|O43707-2|ACTN4	REV__nc|ENSG00000130402|O43707-2|ACTN4	MSMS	A375_MHC_IP_R2	2	454.13775634765625	2	454.18436	906.354167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.393	1	73.129	72.629	73.629	0.73541								0	0	0	0.16876	1	27472	27472		2.8892	0.31174	1		+		17299	18538	12518	12612	16929	16929					-0.10275573210503808
GLAEELVRA	9	Unmodified	_GLAEELVRA_					0	0	0		ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	MULTI-SECPEP	A375_MHC_IP_R1	1	479.67181396484375	2	479.271824	956.529095	-0.60223	-0.00028863	0.29552	0.00014164	-0.30671	-0.000147	479.2719033816552	66.032	0.60835	66.032	65.819	66.428	0					20	11	3	0	0	0	0.4465	1	23918	23918		38.176	14.155	1	2774800			17300	7814	12519	12613	16930	16930					0.049091699261907706
GLAEELVRA	9	Unmodified	_GLAEELVRA_					0	0	0		ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	MULTI-SECPEP	A375_MHC_IP_R2	2	479.6714172363281	2	479.271824	956.529095	-0.62324	-0.0002987	-0.25136	-0.00012047	-0.8746	-0.00041917	479.2717359637366	65.17	0.55916	65.908	65.613	66.172	0.73811					21	10	3	0	0	0	0.5212	1	24689	24689		32.786	32.786	1	2229400			17301	7814	12519	12613	16931	16931					0.049091699261907706
GLAEHLYLA	9	Unmodified	_GLAEHLYLA_					0	0	0		ENST00000487209.5_1_1:43830638-43833598:-|nuORF;ENST00000479686.5_1_1:43830638-43833178:-|nuORF	ENST00000487209.5_1_1:43830638-43833598:-|nuORF	ENST00000487209.5_1_1:43830638-43833598:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	494.1683654785156	2	493.768917	985.523281	-0.35622	-0.00017589	-0.22017	-0.00010871	-0.57639	-0.0002846	493.7687394410571	74.121	0.75965	74.121	73.64	74.4	0					29	14	3	0	0	0	0.061132	1	26985	26985		57.471	19.497	1	4383100			17302	12482	12520	12614	16932	16932					0.0299407141451411
GLAEHLYLA	9	Unmodified	_GLAEHLYLA_					0	0	0		ENST00000487209.5_1_1:43830638-43833598:-|nuORF;ENST00000479686.5_1_1:43830638-43833178:-|nuORF	ENST00000487209.5_1_1:43830638-43833598:-|nuORF	ENST00000487209.5_1_1:43830638-43833598:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1686706542969	2	493.768917	985.523281	-0.45905	-0.00022667	0.28484	0.00014065	-0.17421	-8.6021E-05	493.7689705635202	73.229	0.71232	73.964	73.581	74.294	0.73541					22	13	2	0	0	0	0.24479	1	27773	27773		42.095	13.608	1	4307900			17303	12482	12520	12614	16933	16933					0.0299407141451411
GLAEKIPDV	9	Unmodified	_GLAEKIPDV_					0	0	0		nc|ENSG00000070759|Q96S53-3|TESK2;nc|ENSG00000070759|Q96S53-2|TESK2;ENSG00000070759|ENST00000372086|TESK2	nc|ENSG00000070759|Q96S53-3|TESK2	nc|ENSG00000070759|Q96S53-3|TESK2	MULTI-SECPEP	A375_MHC_IP_R1	1	471.6687316894531	2	471.26875	940.522947	-0.37196	-0.00017529	0.43396	0.00020451	0.062007	2.9222E-05	471.26869232187926	59.889	0.50865	59.889	59.651	60.159	0					13	9	2	0	0	0	0.37663	1	21597	21597		43.772	16.889	1	1247200			17304	1499	12521	12615	16934	16934					0.05030651694664812
GLAENTVTI	9	Unmodified	_GLAENTVTI_					0	0	0		ENSG00000127870|ENST00000381588|RNF6;nc|ENSG00000127870|Q9Y252-2|RNF6	ENSG00000127870|ENST00000381588|RNF6	ENSG00000127870|ENST00000381588|RNF6	MULTI-MSMS	A375_MHC_IP_R2	2	459.6504211425781	2	459.250557	916.486562	-0.35893	-0.00016484	0.082661	3.7962E-05	-0.27627	-0.00012688	459.2505365126561	70.576	0.50672	71.31	70.946	71.453	0.73421					17	9	3	0	0	0	0.11296	1	26769	26769		48.346	6.2513	1	2305000			17305	4106	12522	12616	16935	16935					0.024977747979505693
GLAENTVTI	9	Unmodified	_GLAENTVTI_					0	0	0		ENSG00000127870|ENST00000381588|RNF6;nc|ENSG00000127870|Q9Y252-2|RNF6	ENSG00000127870|ENST00000381588|RNF6	ENSG00000127870|ENST00000381588|RNF6	MULTI-MATCH	A375_MHC_IP_R1	1		2	459.250557	916.486562	-0.081018	-3.7208E-05	0.049742	2.2844E-05	-0.031276	-1.4363E-05	459.2504895788812	71.372	0.45782	71.372	71.108	71.565	0	0.031031	-1.8993E-05	NaN	48.346	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1467500			17306	4106	12522	12616							0.024977747979505693
GLAEQAPCI	9	Carbamidomethyl (C)	_GLAEQAPC(Carbamidomethyl (C))I_	GLAEQAPC(1)I		GLAEQAPC(110)I		0	1	0		ENSG00000107816|ENST00000454422|LZTS2	ENSG00000107816|ENST00000454422|LZTS2	ENSG00000107816|ENST00000454422|LZTS2	MULTI-MSMS	A375_MHC_IP_R1	1	480.1363830566406	2	479.73676	957.458967	-0.56454	-0.00027083	-0.10251	-4.9176E-05	-0.66705	-0.00032001	479.7367847555843	65.725	0.60997	65.725	65.462	66.072	0					25	11	3	0	0	0	0.0097736	1	23786	23786		112.59	44.512	1	3899100			17307	2761	12523	12617	16936	16936	18				-0.021464517339495615
GLAEQAPCI	9	Carbamidomethyl (C)	_GLAEQAPC(Carbamidomethyl (C))I_	GLAEQAPC(1)I		GLAEQAPC(110)I		0	1	0		ENSG00000107816|ENST00000454422|LZTS2	ENSG00000107816|ENST00000454422|LZTS2	ENSG00000107816|ENST00000454422|LZTS2	MULTI-MSMS	A375_MHC_IP_R2	2	479.6714172363281	2	479.73676	957.458967	-0.60333	-0.00028944	-0.11595	-5.5627E-05	-0.71928	-0.00034507	479.7367139343185	65.003	0.65944	65.741	65.461	66.121	0.73811					25	12	3	0	0	0	0.0097736	1	24689	24689		112.59	34.444	1	5427500			17308	2761	12523	12617	16937	16937	18				-0.021464517339495615
GLAEQYPEV	9	Unmodified	_GLAEQYPEV_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000478082.5_1_7:100856177-100861250:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	A375_MHC_IP_R1	1	503.647705078125	2	503.248015	1004.48148	-0.76893	-0.00038696	-3.0465	-0.0015331	-3.8154	-0.0019201	503.24784616030894	67.864	0.75891	67.864	67.552	68.31	0					44	14	4	0	0	0	0.015701	1	24625	24625		88.954	23.719	1	3915700			17309	2688	12524	12618	16938	16938					-0.020585290646749854
GLAEQYPEV	9	Unmodified	_GLAEQYPEV_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000478082.5_1_7:100856177-100861250:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	503.248015	1004.48148	-0.685	-0.00034473	-3.3022	-0.0016618	-3.9872	-0.0020065	503.24781483815946	67.206	0.91482	67.942	67.495	68.41	0.73631	0.039123	-0.00014238	NaN	88.954	42	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3410900			17310	2688	12524	12618							-0.020585290646749854
GLAERISVL	9	Unmodified	_GLAERISVL_					0	0	0		ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF;nc|ENSG00000105287|Q9BZL6-2|PRKD2;ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2	ENST00000597589.5_1_19:47177782-47200527:-|nuORF	ENST00000597589.5_1_19:47177782-47200527:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	479.6896667480469	2	479.290017	956.565481	-0.4361	-0.00020902	-0.34438	-0.00016506	-0.78048	-0.00037408	479.289891315676	74.984	0.55808	74.984	74.653	75.211	0					22	10	3	0	0	0	0.10362	1	27301	27301		72.968	11.61	1	4019900			17311	2585	12525	12619	16939	16939					0.0854604682289164
GLAERISVL	9	Unmodified	_GLAERISVL_					0	0	0		ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF;nc|ENSG00000105287|Q9BZL6-2|PRKD2;ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2	ENST00000597589.5_1_19:47177782-47200527:-|nuORF	ENST00000597589.5_1_19:47177782-47200527:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	479.69000244140625	2	479.290017	956.565481	-0.54816	-0.00026273	-0.19952	-9.5629E-05	-0.74768	-0.00035836	479.289877238105	73.923	0.76428	74.661	74.449	75.214	0.73752					27	14	3	0	0	0	0.10362	1	28087	28087		72.968	20.7	1	2828700			17312	2585	12525	12619	16940	16940					0.0854604682289164
GLAESVSTL	9	Unmodified	_GLAESVSTL_					0	0	0		nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF;nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-2|IST1	nc|ENSG00000182149|P53990-2|IST1	MULTI-MSMS	A375_MHC_IP_R2	2	878.2014770507812	1	876.467289	875.460012	-0.49875	-0.00043714	0.0024187	2.1199E-06	-0.49633	-0.00043502	876.4673182148838	73.588	0.45919	74.324	74.091	74.551	0.7354					21	8	3	0	0	0	0.05754	1	27923	27923		61.357	30.721	1	13157000			17313	8377	12526	12620	16941	16941					0.01730085906626755
GLAESVSTL	9	Unmodified	_GLAESVSTL_					0	0	0		nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF;nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-2|IST1	nc|ENSG00000182149|P53990-2|IST1	MULTI-MATCH	A375_MHC_IP_R1	1		1	876.467289	875.460012	-0.27452	-0.0002406	0.071317	6.2507E-05	-0.2032	-0.0001781	876.4673483239242	74.375	0.45731	74.375	74.146	74.604	0	0.025435	3.7178E-05	NaN	61.357	21	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12790000			17314	8377	12526	12620							0.01730085906626755
GLAEWLHV	8	Unmodified	_GLAEWLHV_					0	0	0			REV__nc|ENSG00000160117|Q8NAG6-1|ANKLE1	REV__nc|ENSG00000160117|Q8NAG6-1|ANKLE1	MULTI-MSMS	A375_MHC_IP_R2	2	462.6685485839844	2	462.750527	923.486502	-0.97632	-0.00045179	0.43077	0.00019934	-0.54555	-0.00025245	462.75063350737065	56.853	0.51024	57.604	57.356	57.867	0.75014					17	9	3	0	0	0	0.77554	1	21466	21466		11.114	0	1	3018600	+		17315	20147	12527	12621	16942	16942					0.021698195886187932
GLAGAVSEL	9	Unmodified	_GLAGAVSEL_					0	0	0		nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	MULTI-MSMS	A375_MHC_IP_R1	1	817.7022705078125	1	816.44616	815.438883	-0.37387	-0.00030525	0.2742	0.00022387	-0.099669	-8.1375E-05	816.4462810216546	79.666	0.66772	79.666	79.367	80.034	0					25	12	3	0	0	0	0.6898	1	29008	29008		7.9102	0.62092	1	7547800			17316	4857	12528	12622	16943	16943					0.023781205977684294
GLAGAVSEL	9	Unmodified	_GLAGAVSEL_					0	0	0		nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	MULTI-MATCH	A375_MHC_IP_R2	2		1	816.44616	815.438883	-0.76618	-0.00062554	0.33771	0.00027572	-0.42846	-0.00034982	816.4463832394756	78.837	0.65988	79.582	79.236	79.896	0.74473	-0.04197	2.7559E-05	NaN	7.9102	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9825600			17317	4857	12528	12622							0.023781205977684294
GLAGPVRGV	9	Unmodified	_GLAGPVRGV_					0	0	0		ENSG00000128739|ENST00000390687|SNRPN;nc|ENSG00000128739|P63162-2|SNRPN;ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678|SNRPB;nc|ENSG00000125835|P14678-3|SNRPB;SNRPN|p.G135E|1|0.29|ENSG00000128739|chr15:24977013-24977013|G/A|missense_variant	ENSG00000128739|ENST00000390687|SNRPN	ENSG00000128739|ENST00000390687|SNRPN	MULTI-MSMS	A375_MHC_IP_R1	1	413.6507263183594	2	413.250695	824.486836	-0.0025158	-1.0397E-06	-1.125	-0.0004649	-1.1275	-0.00046594	413.2507778171581	39.748	0.40622	39.748	39.541	39.948	0					23	7	5	0	0	0	0.026461	1	13605	13605		77.984	14.421	1	6986700			17318	4162	12529	12623	16944	16944					0.06757239308478802
GLAGPVRGV	9	Unmodified	_GLAGPVRGV_					0	0	0		ENSG00000128739|ENST00000390687|SNRPN;nc|ENSG00000128739|P63162-2|SNRPN;ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678|SNRPB;nc|ENSG00000125835|P14678-3|SNRPB;SNRPN|p.G135E|1|0.29|ENSG00000128739|chr15:24977013-24977013|G/A|missense_variant	ENSG00000128739|ENST00000390687|SNRPN	ENSG00000128739|ENST00000390687|SNRPN	MULTI-SECPEP	A375_MHC_IP_R2	2	413.65032958984375	2	413.250695	824.486836	-0.24659	-0.0001019	-0.18584	-7.6799E-05	-0.43243	-0.0001787	413.2506125044924	38.862	0.46183	39.637	39.401	39.863	0.77451					18	8	3	0	0	0	0.089948	1	14334	14334		70.716	17.14	1	6294600			17319	4162	12529	12623	16945	16945					0.06757239308478802
GLAGVKIAEV	10	Unmodified	_GLAGVKIAEV_					0	0	0		nc|ENSG00000239264|Q8NBS9-2|TXNDC5;ENSG00000239264|ENST00000379757|TXNDC5	nc|ENSG00000239264|Q8NBS9-2|TXNDC5	nc|ENSG00000239264|Q8NBS9-2|TXNDC5	MULTI-SECPEP	A375_MHC_IP_R1	1	479.1921081542969	2	478.792392	955.570232	-0.45096	-0.00021592	0.16105	7.711E-05	-0.28991	-0.00013881	478.79246348065305	63.93	0.7611	63.93	63.632	64.393	0					31	14	3	0	0	0	0.21723	1	23100	23100		64.236	9.4628	1	6111100			17320	9762	12530	12624	16946	16946					0.09066930965650499
GLAHFVNEI	9	Unmodified	_GLAHFVNEI_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2;ENST00000490152.1_1_13:20641134-20642237:+|nuORF	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-SECPEP	A375_MHC_IP_R1	1	500.6661071777344	2	500.266542	998.51853	-0.37687	-0.00018853	-0.11467	-5.7366E-05	-0.49154	-0.0002459	500.26646685048337	74.888	1.0121	74.888	74.502	75.514	0					49	19	5	0	0	0	0.040439	1	27243	27243		92.822	32.433	1	18686000			17321	3732	12531	12625	16947	16947					0.01921187271761937
GLAHFVNEI	9	Unmodified	_GLAHFVNEI_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2;ENST00000490152.1_1_13:20641134-20642237:+|nuORF	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-SECPEP	A375_MHC_IP_R2	2	500.666259765625	2	500.266542	998.51853	-0.56543	-0.00028286	0.29224	0.0001462	-0.27319	-0.00013667	500.2666823090784	73.943	1.1195	74.681	74.348	75.467	0.73752					49	21	4	0	0	0	0.061132	1	28030	28030		77.984	31.063	1	22823000			17322	3732	12531	12625	16948	16948					0.01921187271761937
GLAHLDNLK	9	Unmodified	_GLAHLDNLK_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-SECPEP	A375_MHC_IP_R1	1	491.1795349121094	2	490.779816	979.545079	-0.3998	-0.00019621	0.72995	0.00035825	0.33015	0.00016203	490.7801105028456	33.154	0.35305	33.154	32.989	33.342	0					10	6	2	0	0	0	0.13244	1	10814	10814		51.415	22.921	1	2278900			17323	9826	12532	12626	16949	16949					0.05448876163075056
GLAHLDNLK	9	Unmodified	_GLAHLDNLK_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MATCH	A375_MHC_IP_R2	2		2	490.779816	979.545079	-0.56618	-0.00027787	0.018408	9.0341E-06	-0.54777	-0.00026884	490.78007642417043	32.279	0.40807	33.016	32.857	33.265	0.73692	-0.069229	-0.00048363	NaN	51.415	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1481800			17324	9826	12532	12626							0.05448876163075056
GLAIEEKGL	9	Unmodified	_GLAIEEKGL_					0	0	0			REV__ENSG00000100441|ENST00000553935|KHNYN	REV__ENSG00000100441|ENST00000553935|KHNYN	MSMS	A375_MHC_IP_R1	1	465.18402099609375	2	465.26875	928.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.855	1	58.855	58.355	59.355	0								0	0	0	0.1521	1	21151	21151		18.146	1.0598	1		+		17325	17093	12533	12627	16950	16950					0.05582651694669494
GLAKAVASV	9	Unmodified	_GLAKAVASV_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-SECPEP	A375_MHC_IP_R1	1	408.6529235839844	2	408.252903	814.491253	0.025808	1.0536E-05	0.15914	6.4971E-05	0.18495	7.5507E-05	408.25291645111804	39.211	0.60955	39.211	38.983	39.592	0					21	11	3	0	0	0	0.059859	1	13367	13367		71.922	14.451	1	12165000			17326	8230	12534	12628	16951	16951					0.07658703731374317
GLAKAVASV	9	Unmodified	_GLAKAVASV_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-SECPEP	A375_MHC_IP_R2	2	408.65283203125	2	408.252903	814.491253	-0.31366	-0.00012805	0.21769	8.8872E-05	-0.095969	-3.918E-05	408.2529192036932	38.22	0.6623	38.994	38.739	39.401	0.77451					22	12	3	0	0	0	0.05021	1	14044	14044		88.954	21.61	1	8976300			17327	8230	12534	12628	16952	16952					0.07658703731374317
GLAKAYRV	8	Unmodified	_GLAKAYRV_					0	0	0			REV__ENST00000372427.5_1_1:43919019-43919265:-|nuORF	REV__ENST00000372427.5_1_1:43919019-43919265:-|nuORF	MSMS	A375_MHC_IP_R1	1	439.6423034667969	2	439.266345	876.518136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.358	1	43.358	42.858	43.858	0								0	0	0	0.16876	1	15067	15067		9.3474	0.75416	1		+		17328	24067	12535	12629	16953	16953					0.07493812342556794
GLAKLIADV	9	Unmodified	_GLAKLIADV_					0	0	0		ENSG00000168496|ENST00000305885|FEN1;ENST00000401028.2_1_1:91793937-91794252:+|nuORF	ENSG00000168496|ENST00000305885|FEN1	ENSG00000168496|ENST00000305885|FEN1	MULTI-MSMS	A375_MHC_IP_R1	1	450.681640625	2	450.28166	898.548768	-0.35193	-0.00015847	0.0034596	1.5578E-06	-0.34847	-0.00015691	450.2815865752862	86.368	1.1653	86.368	86.072	87.237	0					51	22	4	0	0	0	0.018261	1	31623	31623		85.642	11.219	1	23774000			17329	7311	12536	12630	16954	16954					0.09543545936935516
GLAKLIADV	9	Unmodified	_GLAKLIADV_					0	0	0		ENSG00000168496|ENST00000305885|FEN1;ENST00000401028.2_1_1:91793937-91794252:+|nuORF	ENSG00000168496|ENST00000305885|FEN1	ENSG00000168496|ENST00000305885|FEN1	MULTI-MSMS	A375_MHC_IP_R2	2	450.6815185546875	2	450.28166	898.548768	-0.13972	-6.2914E-05	-0.22309	-0.00010045	-0.36281	-0.00016337	450.2814945326246	85.273	1.0185	86.009	85.677	86.696	0.73601					50	19	4	0	0	0	0.018261	1	32383	32383		85.642	11.219	1	21422000			17330	7311	12536	12630	16955	16955					0.09543545936935516
GLAKSYFE	8	Unmodified	_GLAKSYFE_					0	0	0			REV__UGT2A3|p.Q357Rfs*19|1|0.11|ENSG00000135220|chr4:68931170-68931170|G/-|frameshift_variant	REV__UGT2A3|p.Q357Rfs*19|1|0.11|ENSG00000135220|chr4:68931170-68931170|G/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	457.6603088378906	2	457.734543	913.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.239	1	44.239	43.739	44.739	0								0	0	0	0.16876	1	15425	15425		34.102	3.4659	1		+		17331	18830	12537	12631	16956	16956					-0.005655928851979297
GLAKTKELL	9	Unmodified	_GLAKTKELL_					0	0	0			REV__ENSG00000166963|ENST00000300231|MAP1A	REV__ENSG00000166963|ENST00000300231|MAP1A	MULTI-SECPEP	A375_MHC_IP_R1	1	487.1736145019531	2	486.808042	971.601532	-0.21767	-0.00010596	0.62081	0.00030221	0.40314	0.00019625	486.80831713821937	79.548	0.46201	79.548	79.316	79.778	0					12	8	2	0	0	0	0.60012	1	28989	28989		12.532	0	1	1347800	+		17332	20723	12538	12632	16957	16957					0.11459503999742537
GLALEAFPTL	10	Unmodified	_GLALEAFPTL_					0	0	0		ENST00000492040.1_1_16:30593979-30594321:+|nuORF	ENST00000492040.1_1_16:30593979-30594321:+|nuORF	ENST00000492040.1_1_16:30593979-30594321:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1614379882812	2	516.292225	1030.5699	-0.68867	-0.00035555	0.86319	0.00044566	0.17452	9.0105E-05	516.2922641344421	91.198	0.40466	91.198	90.997	91.401	0					13	7	2	0	0	0	0.69172	1	33525	33525		19.257	0	1	786790			17333	12667	12539	12633	16958	16958					0.05583511245822592
GLALLEGRRLL	11	Unmodified	_GLALLEGRRLL_					0	0	0			REV__LONRF1|p.L299Ffs*8|1|0.2|ENSG00000154359|chr8:12740940-12740940|T/-|frameshift_variant	REV__LONRF1|p.L299Ffs*8|1|0.2|ENSG00000154359|chr8:12740940-12740940|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	404.65911865234375	3	404.25919	1209.75574	-0.54189	-0.00021906	0.18858	7.6237E-05	-0.3533	-0.00014283	404.25926969834813	32.162	0.51336	32.162	31.87	32.383	0					20	9	3	0	0	0	0.71717	1	10353	10353		14.218	6.2728	1	3927800	+		17334	19881	12540	12634	16959	16959					0.15925333485120063
GLALLEGRRLL	11	Unmodified	_GLALLEGRRLL_					0	0	0			REV__LONRF1|p.L299Ffs*8|1|0.2|ENSG00000154359|chr8:12740940-12740940|T/-|frameshift_variant	REV__LONRF1|p.L299Ffs*8|1|0.2|ENSG00000154359|chr8:12740940-12740940|T/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	404.25919	1209.75574	-0.54189	-0.00021906	0.18858	7.6237E-05	-0.3533	-0.00014283	404.25926969834813	32.162	0.51336	32.162	31.87	32.383	0	0.10667	0.00028209	NaN	14.218	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3927800	+		17335	19881	12540	12634							0.15925333485120063
GLALLEGRRLL	11	Unmodified	_GLALLEGRRLL_					0	0	0			REV__LONRF1|p.L299Ffs*8|1|0.2|ENSG00000154359|chr8:12740940-12740940|T/-|frameshift_variant	REV__LONRF1|p.L299Ffs*8|1|0.2|ENSG00000154359|chr8:12740940-12740940|T/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	404.25919	1209.75574	-0.017415	-7.04E-06	-0.39412	-0.00015933	-0.41153	-0.00016637	404.25913404619627	31.231	0.46058	31.949	31.719	32.18	0.71857	-0.10667	-0.0004246	NaN	14.218	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2201000	+		17336	19881	12540	12634							0.15925333485120063
GLALTRPV	8	Unmodified	_GLALTRPV_					0	0	0			REV__ENST00000585266.5_1_17:9939899-9939953:-|nuORF	REV__ENST00000585266.5_1_17:9939899-9939953:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	414.16094970703125	2	413.760895	825.507237	0.43435	0.00017972	-0.14453	-5.9802E-05	0.28982	0.00011992	413.76080285248497	47.743	0.60439	47.743	47.467	48.071	0					18	11	2	0	0	0	0.73227	1	16823	16823		46.021	6.0636	1	2279000	+		17337	26377	12541	12635	16960	16960					0.08750409968274653
GLALTSSSAVT	11	Unmodified	_GLALTSSSAVT_					0	0	0		ENSG00000136828|ENST00000259351|RALGPS1	ENSG00000136828|ENST00000259351|RALGPS1	ENSG00000136828|ENST00000259351|RALGPS1	MULTI-SECPEP	A375_MHC_IP_R1	1	503.65350341796875	2	503.774396	1005.53424	-0.59155	-0.00029801	0.032991	1.662E-05	-0.55856	-0.00028139	503.77411704357104	32.811	0.4045	32.811	32.585	32.989	0					11	7	2	0	0	0	0.56587	1	10630	10630		36.127	19.978	1	2897300			17338	4825	12542	12636	16961	16961					0.03169428998137391
GLALYEAFL	9	Unmodified	_GLALYEAFL_					0	0	0			REV__USP31|p.L1244Rfs*8|1|0.34|ENSG00000103404|chr16:23068373-23068374|AA/-|frameshift_variant	REV__USP31|p.L1244Rfs*8|1|0.34|ENSG00000103404|chr16:23068373-23068374|AA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	499.460693359375	2	498.773668	995.532783	-0.32611	-0.00016266	0.53125	0.00026498	0.20514	0.00010232	498.77154191769216	57.105	0.4588	57.105	56.855	57.313	0					23	8	4	0	0	0	0.73662	1	20539	20539		5.2307	0	1	1866700	+		17339	17275	12543	12637	16962	16962					0.03483839700038516
GLAPDFDPLI	10	Unmodified	_GLAPDFDPLI_					0	0	0			REV__ENSG00000165675|ENST00000394363|ENOX2	REV__ENSG00000165675|ENST00000394363|ENOX2	MULTI-SECPEP	A375_MHC_IP_R1	1	352.94854736328125	3	353.19033	1056.54916	-0.12243	-4.3243E-05	1.6705	0.00059001	1.5481	0.00054677	353.1907903861574	40.944	0.40276	40.944	40.66	41.063	0					11	7	2	0	0	0	0.90853	1	14137	14137		6.1918	0	1	625060	+		17340	20610	12544	12638	16963	16963					0.02314920866160719
GLAPHLEQI	9	Unmodified	_GLAPHLEQI_					0	0	0		nc|ENSG00000196497|Q8TEX9-2|IPO4;ENSG00000196497|ENST00000354464|IPO4;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF;ENST00000561199.5_1_14:24652794-24657993:-|nuORF	nc|ENSG00000196497|Q8TEX9-2|IPO4	nc|ENSG00000196497|Q8TEX9-2|IPO4	MULTI-SECPEP	A375_MHC_IP_R1	1	489.6744689941406	2	489.274367	976.53418	-0.18316	-8.9614E-05	-0.32908	-0.00016101	-0.51224	-0.00025063	489.27417879659663	62.357	0.6146	62.357	62.148	62.762	0					22	11	3	0	0	0	0.021422	1	22524	22524		108	37.282	1	4146800			17341	14837	12545	12639	16964	16964					0.04497473788796924
GLAPHLEQI	9	Unmodified	_GLAPHLEQI_					0	0	0		nc|ENSG00000196497|Q8TEX9-2|IPO4;ENSG00000196497|ENST00000354464|IPO4;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF;ENST00000561199.5_1_14:24652794-24657993:-|nuORF	nc|ENSG00000196497|Q8TEX9-2|IPO4	nc|ENSG00000196497|Q8TEX9-2|IPO4	MULTI-SECPEP	A375_MHC_IP_R2	2	489.6742858886719	2	489.274367	976.53418	-0.88082	-0.00043096	-0.070577	-3.4532E-05	-0.9514	-0.00046549	489.2743532814291	61.545	0.90728	62.291	61.819	62.726	0.74503					27	17	3	0	0	0	0.021422	1	23300	23300		85.272	36.926	1	5424100			17342	14837	12545	12639	16965	16965					0.04497473788796924
GLAPKPVQV	9	Unmodified	_GLAPKPVQV_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-MSMS	A375_MHC_IP_R1	1	455.1817626953125	2	454.781828	907.549102	0.0014378	6.539E-07	-0.52855	-0.00024038	-0.52711	-0.00023972	454.7817642946087	43.014	0.51023	43.014	42.79	43.3	0					26	9	4	0	0	0	0.0070665	1	14942	14942		131.3	56.369	1	9024100			17343	6444	12546	12640	16966	16966					0.0916296565679886
GLAPKPVQV	9	Unmodified	_GLAPKPVQV_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-SECPEP	A375_MHC_IP_R2	2	455.1816711425781	2	454.781828	907.549102	-0.15697	-7.1389E-05	-0.25747	-0.00011709	-0.41444	-0.00018848	454.7816381687245	42.216	0.46039	42.988	42.757	43.218	0.7724					20	8	3	0	0	0	0.011229	1	15680	15680		123.1	51.963	1	8495100			17344	6444	12546	12640	16967	16967					0.0916296565679886
GLAPLEVRV	9	Unmodified	_GLAPLEVRV_					0	0	0		nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB	nc|ENSG00000136068|O75369-6|FLNB	nc|ENSG00000136068|O75369-6|FLNB	MULTI-MSMS	A375_MHC_IP_R2	2	477.6927185058594	2	477.292559	952.570566	-0.53944	-0.00025747	0.035467	1.6928E-05	-0.50397	-0.00024054	477.29251560831034	76.944	0.50346	77.687	77.354	77.857	0.74294					19	9	3	0	0	0	0.34064	1	29198	29198		27.629	2.2295	1	2932300			17345	4749	12547	12641	16968	16968					0.09238350685518526
GLAPLHIQL	9	Unmodified	_GLAPLHIQL_					0	0	0		ENSG00000126903|ENST00000651600|SLC10A3	ENSG00000126903|ENST00000651600|SLC10A3	ENSG00000126903|ENST00000651600|SLC10A3	MULTI-SECPEP	A375_MHC_IP_R1	1	481.6950988769531	2	481.295102	960.575651	-0.37896	-0.00018239	0.1407	6.7716E-05	-0.23827	-0.00011468	481.29510697317784	96.145	0.50964	96.145	95.917	96.427	0					14	9	2	0	0	0	0.20094	1	35368	35368		53.576	17.531	1	1256500			17346	4070	12548	12642	16969	16969					0.0937865454814073
GLAPLHIQL	9	Unmodified	_GLAPLHIQL_					0	0	0		ENSG00000126903|ENST00000651600|SLC10A3	ENSG00000126903|ENST00000651600|SLC10A3	ENSG00000126903|ENST00000651600|SLC10A3	MULTI-SECPEP	A375_MHC_IP_R2	2	481.695068359375	2	481.295102	960.575651	-0.31168	-0.00015001	0.70001	0.00033691	0.38833	0.0001869	481.2955053881697	95.094	0.3573	95.844	95.684	96.041	0.75044					10	6	2	0	0	0	0.043556	1	36165	36165		89.427	29.037	1	1392600			17347	4070	12548	12642	16970	16970					0.0937865454814073
GLAPQIHDL	9	Unmodified	_GLAPQIHDL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	A375_MHC_IP_R1	1	482.666259765625	2	482.266542	962.51853	-0.36494	-0.000176	-0.22032	-0.00010625	-0.58527	-0.00028225	482.26637209988473	61.506	0.50914	61.506	61.279	61.788	0					21	9	3	0	0	0	0.01574	1	22184	22184		88.904	44.497	1	10605000			17348	8538	12549	12643	16971	16971					0.03577187271753246
GLAPQIHDL	9	Unmodified	_GLAPQIHDL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-SECPEP	A375_MHC_IP_R2	2	482.6661376953125	2	482.266542	962.51853	-0.87085	-0.00041998	0.046514	2.2432E-05	-0.82434	-0.00039755	482.2665214267208	60.694	0.55807	61.439	61.16	61.718	0.74503					24	10	3	0	0	0	0.027983	1	22962	22962		92.491	36.314	1	12670000			17349	8538	12549	12643	16972	16972					0.03577187271753246
GLAPTSPHL	9	Unmodified	_GLAPTSPHL_					0	0	0		nc|ENSG00000123358|P22736-2|NR4A1;ENSG00000123358|ENST00000394825|NR4A1;nc|ENSG00000123358|P22736-3|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	MULTI-SECPEP	A375_MHC_IP_R1	1	447.14794921875	2	446.747985	891.481417	0.11433	5.1076E-05	-0.44581	-0.00019916	-0.33148	-0.00014809	446.7477874376815	47.891	0.5549	47.891	47.567	48.122	0					21	10	3	0	0	0	0.068175	1	16842	16842		74.396	38.352	1	10358000			17350	3841	12550	12644	16973	16973					0.031335157259945845
GLAPTSPHL	9	Unmodified	_GLAPTSPHL_					0	0	0		nc|ENSG00000123358|P22736-2|NR4A1;ENSG00000123358|ENST00000394825|NR4A1;nc|ENSG00000123358|P22736-3|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	MULTI-SECPEP	A375_MHC_IP_R2	2	447.1477966308594	2	446.747985	891.481417	-0.14969	-6.6873E-05	-0.078812	-3.5209E-05	-0.2285	-0.00010208	446.74797089849477	46.979	0.45916	47.741	47.563	48.022	0.76128					17	8	3	0	0	0	0.068175	1	17615	17615		74.396	36.245	1	9272800			17351	3841	12550	12644	16974	16974					0.031335157259945845
GLAQFVREI	9	Unmodified	_GLAQFVREI_					0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3;ENST00000470832.1_1_X:70463642-70464308:-|nuORF	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	MULTI-SECPEP	A375_MHC_IP_R2	2	516.1593627929688	2	516.795466	1031.57638	-0.67964	-0.00035123	0.017577	9.0837E-06	-0.66206	-0.00034215	516.7952374073011	92.348	0.55609	93.087	92.836	93.392	0.73901					15	10	2	0	0	0	0.71341	1	35044	35044		18.146	5.1039	1	1096700			17352	5661	12551	12645	16975	16975					0.06185449197187154
GLAQLPLFCR	10	Unmodified	_GLAQLPLFCR_					0	0	0			REV__ENST00000460906.5_1_1:45478985-45479553:+|nuORF	REV__ENST00000460906.5_1_1:45478985-45479553:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	558.6978759765625	2	559.312969	1116.61138	-0.50292	-0.00028129	1.7152	0.00095932	1.2123	0.00067803	559.8159359153628	57.724	0.40564	57.724	57.518	57.923	0					9	7	2	0	0	0	0.92389	1	20658	20658		1.6526	0	1	1418900	+		17353	24972	12552	12646	16976	16976					0.05774368733477786
GLAQSTGLL	9	Unmodified	_GLAQSTGLL_					0	0	0		ENSG00000124171|ENST00000371610|PARD6B	ENSG00000124171|ENST00000371610|PARD6B	ENSG00000124171|ENST00000371610|PARD6B	MULTI-SECPEP	A375_MHC_IP_R2	2	430.1374206542969	2	430.247818	858.481082	-0.3387	-0.00014573	-0.64215	-0.00027629	-0.98085	-0.00042201	430.24762695314985	36.146	0.35879	36.917	36.646	37.005	0.7709					10	6	2	0	0	0	0.56537	1	13087	13087		22.736	2.2827	1	1326700			17354	3875	12553	12647	16977	16977					0.04618096006140604
GLARDAVPV	9	Unmodified	_GLARDAVPV_					0	0	0		ENST00000512287.1_1_5:80531836-80531875:-|nuORF	ENST00000512287.1_1_5:80531836-80531875:-|nuORF	ENST00000512287.1_1_5:80531836-80531875:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	449.6611328125	2	449.261259	896.507966	-0.10974	-4.9302E-05	-0.17936	-8.0581E-05	-0.2891	-0.00012988	449.26112725885275	43.988	0.91982	43.988	43.706	44.626	0					35	17	3	0	0	0	0.054426	1	15305	15305		62.573	20.478	1	27320000			17355	12917	12554	12648	16978	16978					0.055572046173210765
GLARDAVPV	9	Unmodified	_GLARDAVPV_					0	0	0		ENST00000512287.1_1_5:80531836-80531875:-|nuORF	ENST00000512287.1_1_5:80531836-80531875:-|nuORF	ENST00000512287.1_1_5:80531836-80531875:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	449.6614685058594	2	449.261259	896.507966	-0.19468	-8.7461E-05	-0.36571	-0.0001643	-0.56039	-0.00025176	449.261039425487	43.129	0.90966	43.901	43.623	44.533	0.7724					35	17	3	0	0	0	0.24324	1	16035	16035		45.7	15.063	1	30939000			17356	12917	12554	12648	16979	16979					0.055572046173210765
GLARDLPAV	9	Unmodified	_GLARDLPAV_					0	0	0		ENSG00000023171|ENST00000635736|GRAMD1B	ENSG00000023171|ENST00000635736|GRAMD1B	ENSG00000023171|ENST00000635736|GRAMD1B	MULTI-SECPEP	A375_MHC_IP_R1	1	456.6692199707031	2	456.269084	910.523616	-0.31161	-0.00014218	0.35853	0.00016358	0.046919	2.1408E-05	456.26923013609905	58.444	0.76054	58.444	58.126	58.887	0					34	14	3	0	0	0	0.05021	1	20970	20970		69.105	16.837	1	9723700			17357	1072	12555	12649	16980	16980					0.06477491134353386
GLARDLPAV	9	Unmodified	_GLARDLPAV_					0	0	0		ENSG00000023171|ENST00000635736|GRAMD1B	ENSG00000023171|ENST00000635736|GRAMD1B	ENSG00000023171|ENST00000635736|GRAMD1B	MULTI-SECPEP	A375_MHC_IP_R2	2	456.6685791015625	2	456.269084	910.523616	-0.56614	-0.00025831	0.049231	2.2462E-05	-0.51691	-0.00023585	456.2690539166771	57.602	0.81077	58.351	57.968	58.779	0.74894					44	15	5	0	0	0	0.31606	1	21733	21733		32.786	3.7041	1	13682000			17358	1072	12555	12649	16981	16981					0.06477491134353386
GLARGPVPP	9	Unmodified	_GLARGPVPP_					0	0	0			REV__ENST00000358600.7_1_19:14492051-14492228:+|nuORF	REV__ENST00000358600.7_1_19:14492051-14492228:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	432.3100280761719	2	432.25852	862.502486	-0.63309	-0.00027366	0.26948	0.00011648	-0.36361	-0.00015717	432.2585853207103	36.631	3.2605	37.402	36.24	39.501	0.7709					145	63	3	0	0	0	0.64808	1	13095	13095		11.64	3.047	1	17038000	+		17359	23859	12556	12650	16982	16982					0.06573525825513116
GLARIYSY	8	Unmodified	_GLARIYSY_					0	0	0		ENSG00000135446|ENST00000257904|CDK4;nc|ENSG00000135446|P11802-2|CDK4;ENST00000551706.1_1_12:58144639-58145133:-|nuORF	ENSG00000135446|ENST00000257904|CDK4	ENSG00000135446|ENST00000257904|CDK4	MULTI-SECPEP	A375_MHC_IP_R1	1	472.1554260253906	2	471.75581	941.497067	-0.54147	-0.00025544	-0.10272	-4.8458E-05	-0.64419	-0.0003039	471.7558840171481	53.174	0.30391	53.174	52.997	53.301	0					10	5	2	0	0	0	0.51146	1	18974	18974		52.268	7.8613	1	2049400			17360	4684	12557	12651	16983	16983					0.023978022430242163
GLARIYSY	8	Unmodified	_GLARIYSY_					0	0	0		ENSG00000135446|ENST00000257904|CDK4;nc|ENSG00000135446|P11802-2|CDK4;ENST00000551706.1_1_12:58144639-58145133:-|nuORF	ENSG00000135446|ENST00000257904|CDK4	ENSG00000135446|ENST00000257904|CDK4	MULTI-SECPEP	A375_MHC_IP_R2	2	472.1554260253906	2	471.75581	941.497067	-0.99039	-0.00046722	-0.0018909	-8.9202E-07	-0.99228	-0.00046812	471.7559209692838	52.368	0.35215	53.12	52.882	53.234	0.75225					9	6	2	0	0	0	0.77651	1	19771	19771		42.095	3.9434	1	1753500			17361	4684	12557	12651	16984	16984					0.023978022430242163
GLARKGPH	8	Unmodified	_GLARKGPH_					0	0	0			REV__ENSG00000170893|ENST00000302649|TRH	REV__ENSG00000170893|ENST00000302649|TRH	MULTI-SECPEP	A375_MHC_IP_R1	1	835.3195190429688	1	835.489696	834.48242	-0.69138	-0.00057764	-0.71886	-0.0006006	-1.4102	-0.0011782	835.4912823495423	121.15	0.71198	121.15	120.96	121.67	0					13	13	2	0	0	0	0.96296	1	45069	45069		10.183	0.83596	1	16867000	+		17362	21029	12558	12652	16985	16985					0.058557748855605496
GLASAEQQGL	10	Unmodified	_GLASAEQQGL_					0	0	0		nc|ENSG00000215906|A8MY62|LACTBL1;ENSG00000215906|ENST00000426928|LACTBL1	nc|ENSG00000215906|A8MY62|LACTBL1	nc|ENSG00000215906|A8MY62|LACTBL1	MULTI-SECPEP	A375_MHC_IP_R1	1	486.62451171875	2	487.251089	972.487624	-0.30262	-0.00014745	-2.2141	-0.0010788	-2.5167	-0.0012263	487.2516636225069	87.517	0.40719	87.517	87.34	87.747	0					11	7	2	0	0	0	0.80715	1	32068	32068		16.942	3.4344	1	923890			17363	9649	12559	12653	16986	16986					0.0002798916684696451
GLASRTWH	8	Unmodified	_GLASRTWH_					0	0	0			REV__ENST00000561801.2_2_16:81118195-81129794:-|nuORF	REV__ENST00000561801.2_2_16:81118195-81129794:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	464.2893981933594	2	464.243401	926.472249	-0.70687	-0.00032816	-0.60684	-0.00028172	-1.3137	-0.00060988	464.24302212820936	27.037	0.46091	27.716	27.484	27.945	0.67857					11	8	2	0	0	0	0.77123	1	9199	9199		14.582	0.67564	1	1697900	+		17364	26179	12560	12654	16987	16987					0.0060716716033084595
GLATDVQTV	9	Unmodified	_GLATDVQTV_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	A375_MHC_IP_R1	1	452.64263916015625	2	452.242732	902.470912	-0.19816	-8.9616E-05	0.13182	5.9614E-05	-0.066343	-3.0003E-05	452.2426742227665	42.01	0.86079	42.01	41.828	42.689	0					32	16	3	0	0	0	0.03063	1	14537	14537		74.423	16.951	1	7739600			17365	10032	12561	12655	16988	16988					0.015774882809068913
GLATDVQTV	9	Unmodified	_GLATDVQTV_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	A375_MHC_IP_R1	1	452.6421203613281	2	452.242732	902.470912	-0.16166	-7.311E-05	0.040473	1.8303E-05	-0.12119	-5.4806E-05	452.2427406411931	57.441	2.0338	57.441	57.007	59.041	0					105	39	5	0	0	0	0.004328	2	20503	20503;20950		136.33	54.443	1	313090000			17366	10032	12561	12655	16989;16990	16989					0.015774882809068913
GLATDVQTV	9	Unmodified	_GLATDVQTV_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	A375_MHC_IP_R2	2	452.6424560546875	2	452.242732	902.470912	-0.66146	-0.00029914	-0.029222	-1.3216E-05	-0.69068	-0.00031236	452.2427088232098	56.653	2.2887	57.403	57	59.289	0.75015					117	44	5	0	0	0	0.01001	2	21322	21322;21766		123.45	47.69	1	319940000			17367	10032	12561	12655	16991;16992	16991					0.015774882809068913
GLATDVQTV	9	Unmodified	_GLATDVQTV_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	A375_MHC_IP_R2	2	904.2193603515625	1	903.478188	902.470912	-0.81058	-0.00073234	-0.22094	-0.00019962	-1.0315	-0.00093196	903.4779887191803	56.581	2.6956	57.331	56.948	59.644	0.75015					129	52	5	0	0	0	0.0085749	1	21643	21643		171.09	82.182	1	743840000			17368	10032	12561	12655	16993	16993					0.015774882809068913
GLATDVQTV	9	Unmodified	_GLATDVQTV_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MATCH	A375_MHC_IP_R1	1		1	903.478188	902.470912	-0.1346	-0.00012161	-0.2806	-0.00025352	-0.4152	-0.00037512	903.4779358167458	57.402	2.7442	57.402	57.007	59.752	0	0.035665	-2.0734E-05	NaN	171.09	135	53	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	660320000			17369	10032	12561	12655							0.015774882809068913
GLATLIGDPT	10	Unmodified	_GLATLIGDPT_					0	0	0		tr|U7T0S8|U7T0S8_FUSNUCitratetransporter-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00632PE=3SV=1	tr|U7T0S8|U7T0S8_FUSNUCitratetransporter-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00632PE=3SV=1	tr|U7T0S8|U7T0S8_FUSNUCitratetransporter-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00632PE=3SV=1	MSMS	A375_MHC_IP_R2	2	479.19207763671875	2	479.266207	956.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.999	1	83.739	83.239	84.239	0.73962								0	0	0	0.14522	1	31540	31540		26.884	2.2098	1				17370	29888	12562	12656	16994	16994					0.03786347832055981
GLAVFTRF	8	Unmodified	_GLAVFTRF_					0	0	0		nc|ENSG00000112584|Q96EK7-2|FAM120B;ENSG00000112584|ENST00000476287|FAM120B	nc|ENSG00000112584|Q96EK7-2|FAM120B	nc|ENSG00000112584|Q96EK7-2|FAM120B	MULTI-SECPEP	A375_MHC_IP_R2	2	456.16064453125	2	455.760895	909.507237	-0.30287	-0.00013804	-0.67964	-0.00030975	-0.98251	-0.00044779	455.76077373144733	48.706	0.45861	49.463	49.231	49.69	0.75737					18	8	3	0	0	0	0.88799	1	18304	18304		9.3474	0.75416	1	1232300			17371	3096	12563	12657	16995	16995					0.04886409968275984
GLAVFTRF	8	Unmodified	_GLAVFTRF_					0	0	0		nc|ENSG00000112584|Q96EK7-2|FAM120B;ENSG00000112584|ENST00000476287|FAM120B	nc|ENSG00000112584|Q96EK7-2|FAM120B	nc|ENSG00000112584|Q96EK7-2|FAM120B	MULTI-MATCH	A375_MHC_IP_R1	1		2	455.760895	909.507237	0.066857	3.0471E-05	0.21822	9.9455E-05	0.28507	0.00012993	455.76089502149904	49.597	0.45758	49.597	49.387	49.845	0	0.067021	0.00045679	NaN	9.3474	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1107100			17372	3096	12563	12657							0.04886409968275984
GLAVFVVATV	10	Unmodified	_GLAVFVVATV_					0	0	0			REV__nc|ENSG00000183023|P32418-2|SLC8A1	REV__nc|ENSG00000183023|P32418-2|SLC8A1	MULTI-SECPEP	A375_MHC_IP_R1	1	488.6971740722656	2	488.29731	974.580068	-0.12792	-6.2461E-05	-0.071714	-3.5018E-05	-0.19963	-9.7479E-05	488.29719342274757	106	0.51021	106	105.76	106.27	0					15	9	2	0	0	0	0.76414	1	38949	38949		10.074	0	1	1251100	+		17373	21728	12564	12658	16996	16996					0.09176118971049618
GLAVFYPAL	9	Unmodified	_GLAVFYPAL_					0	0	0			REV__tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	REV__tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	475.1607360839844	2	475.770929	949.527304	-0.71772	-0.00034147	-1.0563	-0.00050256	-1.774	-0.00084403	475.76904611842434	66.122	0.45971	66.86	66.577	67.037	0.73812					17	8	3	0	0	0	0.64653	1	24983	24983		2.3027	0	1	1124200	+		17374	28291	12565	12659	16997	16997					0.05052160908223868
GLAVRGRYP	9	Unmodified	_GLAVRGRYP_					0	0	0			REV__ENST00000468090.5_1_21:45176243-45176483:+|nuORF	REV__ENST00000468090.5_1_21:45176243-45176483:+|nuORF	MSMS	A375_MHC_IP_R1	1	494.6946716308594	2	494.787976	987.561398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.303	1	65.303	64.803	65.803	0								0	0	0	0.14812	1	23640	23640		24.674	0.65332	1		+		17375	25074	12566	12660	16998	16998					0.06712002119843419
GLAVTTITDLA	11	Unmodified	_GLAVTTITDLA_					0	0	0			REV__ENSG00000138160|ENST00000260731|KIF11	REV__ENSG00000138160|ENST00000260731|KIF11	MULTI-SECPEP	A375_MHC_IP_R2	2	538.15771484375	2	537.805697	1073.59684	-1.1627	-0.00062532	-0.3593	-0.00019323	-1.522	-0.00081855	537.8055535379241	24.288	0.20318	24.932	24.806	25.009	0.64368					5	3	2	0	0	0	0.99606	1	7925	7925		1.3295	1.3295	1	2277300	+		17376	19071	12567	12661	16999	16999					0.06298575066330159
GLCERLVSL	9	Carbamidomethyl (C)	_GLC(Carbamidomethyl (C))ERLVSL_	GLC(1)ERLVSL		GLC(70)ERLVSL		0	1	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	A375_MHC_IP_R1	1	524.1867065429688	2	523.786784	1045.55902	-0.53457	-0.00028	-0.91217	-0.00047778	-1.4467	-0.00075778	523.786547547001	76.156	0.50453	76.156	75.865	76.37	0					24	9	4	0	0	0	0.11849	1	27737	27737		70.332	16.499	1	3384300			17377	9866	12568	12662	17000	17000	52				0.03805785599865885
GLCSCCCSW	9	Unmodified	_GLCSCCCSW_					0	0	0		ENST00000305557.9_1_2:74657430-74657594:-|nuORF	ENST00000305557.9_1_2:74657430-74657594:-|nuORF	ENST00000305557.9_1_2:74657430-74657594:-|nuORF	MSMS	A375_MHC_IP_R2	2	481.1535339355469	2	481.155377	960.2962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.033	1	32.77	32.27	33.27	0.73692								0	0	0	0.15486	1	11363	11363		2.3027	1.1094	1				17378	10570	12569	12663	17001	17001					-0.1855361772344395
GLCSCCCSW	9	Unmodified	_GLCSCCCSW_					0	0	0		ENST00000305557.9_1_2:74657430-74657594:-|nuORF	ENST00000305557.9_1_2:74657430-74657594:-|nuORF	ENST00000305557.9_1_2:74657430-74657594:-|nuORF	MSMS	A375_MHC_IP_R2	2	481.17938232421875	2	481.155377	960.2962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.349	1	67.086	66.586	67.586	0.73631								0	0	0	0.15486	1	25141	25141		2.3027	1.5091	1				17379	10570	12569	12663	17002	17002					-0.1855361772344395
GLDAARTYV	9	Unmodified	_GLDAARTYV_					0	0	0		ZBTB39|p.N61I|1|0.12|ENSG00000166860|chr12:57004736-57004736|T/A|missense_variant;ENSG00000166860|ENST00000300101|ZBTB39	ZBTB39|p.N61I|1|0.12|ENSG00000166860|chr12:57004736-57004736|T/A|missense_variant	ZBTB39|p.N61I|1|0.12|ENSG00000166860|chr12:57004736-57004736|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	483.6560974121094	2	483.256174	964.497795	-0.12753	-6.1631E-05	0.1988	9.607E-05	0.071264	3.4439E-05	483.2562129538152	45.645	0.65881	45.645	45.384	46.043	0					21	12	2	0	0	0	0.20059	1	15992	15992		59.368	28.1	1	2821300			17380	7122	12570	12664	17003	17003					0.01412596892100737
GLDAARTYV	9	Unmodified	_GLDAARTYV_					0	0	0		ZBTB39|p.N61I|1|0.12|ENSG00000166860|chr12:57004736-57004736|T/A|missense_variant;ENSG00000166860|ENST00000300101|ZBTB39	ZBTB39|p.N61I|1|0.12|ENSG00000166860|chr12:57004736-57004736|T/A|missense_variant	ZBTB39|p.N61I|1|0.12|ENSG00000166860|chr12:57004736-57004736|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6564025878906	2	483.256174	964.497795	-0.70228	-0.00033938	0.53781	0.0002599	-0.16448	-7.9484E-05	483.25659854239035	44.922	0.96732	45.691	45.34	46.307	0.76909					23	18	2	0	0	0	0.20059	1	16762	16762		51.415	13.441	1	3200800			17381	7122	12570	12664	17004	17004					0.01412596892100737
GLDAIITQV	9	Unmodified	_GLDAIITQV_					0	0	0		ENST00000586749.1_1_19:649375-650400:-|nuORF	ENST00000586749.1_1_19:649375-650400:-|nuORF	ENST00000586749.1_1_19:649375-650400:-|nuORF	MSMS	A375_MHC_IP_R1	1	465.202392578125	2	465.26875	928.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.13	1	112.13	111.63	112.63	0								0	0	0	0.14767	1	41099	41099		25.399	2.2509	1				17382	13732	12571	12665	17005	17005					0.05582651694658125
GLDALKVTV	9	Unmodified	_GLDALKVTV_					0	0	0		ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79827372-79827747:-|nuORF	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-SECPEP	A375_MHC_IP_R1	1	458.67889404296875	2	458.279118	914.543683	-0.31413	-0.00014396	-0.49072	-0.00022489	-0.80485	-0.00036885	458.2789963968568	76.539	1.5203	76.539	75.966	77.486	0					60	29	4	0	0	0	0.090157	1	27859	27859		67.838	6.4807	1	13650000			17383	6370	12572	12666	17006	17006					0.08299242074326685
GLDALKVTV	9	Unmodified	_GLDALKVTV_					0	0	0		ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79827372-79827747:-|nuORF	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-SECPEP	A375_MHC_IP_R2	2	458.6788330078125	2	458.279118	914.543683	-0.3381	-0.00015495	-0.95369	-0.00043705	-1.2918	-0.000592	458.27881219116284	75.67	2.0333	76.411	76.078	78.111	0.74052					68	39	3	0	0	0	0.090157	1	28690	28690		67.838	6.4807	1	20224000			17384	6370	12572	12666	17007	17007					0.08299242074326685
GLDDIKDLKV	10	Unmodified	_GLDDIKDLKV_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-SECPEP	A375_MHC_IP_R1	1	558.7190551757812	2	558.318971	1114.62339	-0.69932	-0.00039044	0.41187	0.00022995	-0.28746	-0.00016049	558.3191373033809	66.249	0.91496	66.249	65.921	66.836	0					43	17	4	0	0	0	0.025494	1	23952	23952		132.22	65.763	1	25136000			17385	6139	12573	12667	17008	17008					0.0706626395767671
GLDDIKDLKV	10	Unmodified	_GLDDIKDLKV_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-MSMS	A375_MHC_IP_R2	2	372.9483642578125	3	372.548406	1114.62339	0.31064	0.00011573	-0.19044	-7.0948E-05	0.1202	4.4782E-05	372.54829186992845	65.459	1.2722	66.197	65.817	67.089	0.73811					75	24	6	0	0	0	0.098574	2	24761	24761;24825		55.249	18.854	1	65281000			17386	6139	12573	12667	17009;17010	17009					0.0706626395767671
GLDDIKDLKV	10	Unmodified	_GLDDIKDLKV_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-SECPEP	A375_MHC_IP_R2	2	558.7186279296875	2	558.318971	1114.62339	-0.85114	-0.00047521	0.45829	0.00025587	-0.39285	-0.00021934	558.3192539447464	65.454	1.0158	66.192	65.613	66.629	0.73811					52	19	5	0	0	0	0.017076	1	24765	24765		121.93	51.598	1	21732000			17387	6139	12573	12667	17011	17011					0.0706626395767671
GLDDKLLHY	9	Unmodified	_GLDDKLLHY_					0	0	0		nc|ENSG00000156384|Q86XK3-3|SFR1;ENSG00000156384|ENST00000369727|SFR1;nc|ENSG00000156384|Q86XK3-2|SFR1	nc|ENSG00000156384|Q86XK3-3|SFR1	nc|ENSG00000156384|Q86XK3-3|SFR1	MULTI-SECPEP	A375_MHC_IP_R1	1	537.6844482421875	2	537.284931	1072.55531	-0.73218	-0.00039339	-0.62169	-0.00033403	-1.3539	-0.00072742	537.284806297502	59.08	0.66159	59.08	58.786	59.448	0					26	12	3	0	0	0	0.05217	1	21222	21222		89.401	45.628	1	4626100			17388	6189	12574	12668	17012	17012					0.021934390976639406
GLDDKLLHY	9	Unmodified	_GLDDKLLHY_					0	0	0		nc|ENSG00000156384|Q86XK3-3|SFR1;ENSG00000156384|ENST00000369727|SFR1;nc|ENSG00000156384|Q86XK3-2|SFR1	nc|ENSG00000156384|Q86XK3-3|SFR1	nc|ENSG00000156384|Q86XK3-3|SFR1	MULTI-MSMS	A375_MHC_IP_R2	2	358.9253845214844	3	358.525713	1072.55531	-0.49823	-0.00017863	0.014418	5.1693E-06	-0.48381	-0.00017346	358.52567674921414	58.259	0.6596	59.008	58.729	59.389	0.74895					31	12	4	0	0	0	0.098973	1	22019	22019		38.176	23.957	1	11135000			17389	6189	12574	12668	17013	17013					0.021934390976639406
GLDDKLLHY	9	Unmodified	_GLDDKLLHY_					0	0	0		nc|ENSG00000156384|Q86XK3-3|SFR1;ENSG00000156384|ENST00000369727|SFR1;nc|ENSG00000156384|Q86XK3-2|SFR1	nc|ENSG00000156384|Q86XK3-3|SFR1	nc|ENSG00000156384|Q86XK3-3|SFR1	MULTI-SECPEP	A375_MHC_IP_R2	2	537.6842041015625	2	537.284931	1072.55531	-1.1637	-0.00062524	-0.39246	-0.00021086	-1.5562	-0.0008361	537.284870378317	58.274	0.65866	59.023	58.679	59.338	0.74895					26	12	3	0	0	0	0.10362	1	22029	22029		72.968	41.7	1	3972800			17390	6189	12574	12668	17014	17014					0.021934390976639406
GLDEALYNV	9	Unmodified	_GLDEALYNV_					0	0	0		ENSG00000138593|ENST00000559471|SECISBP2L;nc|ENSG00000138593|Q93073-2|SECISBP2L	ENSG00000138593|ENST00000559471|SECISBP2L	ENSG00000138593|ENST00000559471|SECISBP2L	MULTI-MSMS	A375_MHC_IP_R1	1	497.6475830078125	2	497.248015	992.481476	-0.27834	-0.0001384	0.53702	0.00026703	0.25868	0.00012863	497.2481425257894	93.404	1.0672	93.404	93.023	94.09	0					58	20	4	0	0	0	0.010037	1	34271	34271		96.285	29.828	1	15366000			17391	5002	12575	12669	17015	17015					-0.015065290646589347
GLDEALYNV	9	Unmodified	_GLDEALYNV_					0	0	0		ENSG00000138593|ENST00000559471|SECISBP2L;nc|ENSG00000138593|Q93073-2|SECISBP2L	ENSG00000138593|ENST00000559471|SECISBP2L	ENSG00000138593|ENST00000559471|SECISBP2L	MULTI-MSMS	A375_MHC_IP_R2	2	993.8864135742188	1	993.488753	992.481476	0.080494	7.997E-05	-0.12121	-0.00012042	-0.040715	-4.045E-05	993.4886005870316	92.816	0.75967	93.555	93.19	93.95	0.73902					31	14	3	0	0	0	0.021889	1	35211	35211		81.89	3.7408	1	10895000			17392	5002	12575	12669	17016	17016					-0.015065290646589347
GLDEALYNV	9	Unmodified	_GLDEALYNV_					0	0	0		ENSG00000138593|ENST00000559471|SECISBP2L;nc|ENSG00000138593|Q93073-2|SECISBP2L	ENSG00000138593|ENST00000559471|SECISBP2L	ENSG00000138593|ENST00000559471|SECISBP2L	MULTI-MSMS	A375_MHC_IP_R2	2	497.64727783203125	2	497.248015	992.481476	-0.41881	-0.00020825	0.2778	0.00013814	-0.14101	-7.0116E-05	497.24800764174756	92.838	1.0655	93.577	93.14	94.205	0.73902					56	20	4	0	0	0	0.010037	1	35225	35225		96.285	24.362	1	17669000			17393	5002	12575	12669	17017	17017					-0.015065290646589347
GLDEALYNV	9	Unmodified	_GLDEALYNV_					0	0	0		ENSG00000138593|ENST00000559471|SECISBP2L;nc|ENSG00000138593|Q93073-2|SECISBP2L	ENSG00000138593|ENST00000559471|SECISBP2L	ENSG00000138593|ENST00000559471|SECISBP2L	MULTI-MATCH	A375_MHC_IP_R1	1		1	993.488753	992.481476	0.31584	0.00031378	-0.0023944	-2.3788E-06	0.31344	0.0003114	993.4887017829109	93.407	0.76593	93.407	93.074	93.84	0	-0.074442	2.9423E-05	NaN	81.89	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12815000			17394	5002	12575	12669							-0.015065290646589347
GLDEILKFV	9	Unmodified	_GLDEILKFV_					0	0	0		nc|ENSG00000196296|O14983|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983-3|ATP2A1	nc|ENSG00000196296|O14983|ATP2A1	nc|ENSG00000196296|O14983|ATP2A1	MULTI-MSMS	A375_MHC_IP_R1	1	517.7001342773438	2	517.30005	1032.58555	-0.33678	-0.00017422	0.37239	0.00019264	0.035606	1.8419E-05	517.3003720666192	78.756	0.6084	78.756	78.352	78.96	0					30	11	4	0	0	0	0.050162	1	28733	28733		64.236	1.6636	1	9334400			17395	9024	12576	12670	17018	17018					0.07055797762859584
GLDELFGKL	9	Unmodified	_GLDELFGKL_					0	0	0			REV__nc|ENSG00000185013|Q96P26-3|NT5C1B	REV__nc|ENSG00000185013|Q96P26-3|NT5C1B	MULTI-MSMS	A375_MHC_IP_R1	1	496.6760559082031	2	496.276575	990.538597	-0.46517	-0.00023085	-0.16824	-8.3494E-05	-0.63341	-0.00031435	496.2764135088147	83.789	1.0142	83.789	83.277	84.292	0					25	19	2	0	0	0	0.22528	1	30582	30582		36.127	1.7253	1	5668400	+		17396	21859	12577	12671	17019	17019					0.04294938211717181
GLDELFVQV	9	Unmodified	_GLDELFVQV_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-MSMS	A375_MHC_IP_R1	1	510.6739196777344	2	510.274032	1018.53351	-0.46376	-0.00023664	-0.28425	-0.00014504	-0.74801	-0.00038169	510.2738168263523	128.86	0.86632	128.86	128.68	129.55	0					31	16	4	0	0	0	0.0014061	1	49519	49519		149.99	41.998	1	129860000			17397	9277	12578	12672	17020	17020					0.024986343491036678
GLDELFVQV	9	Unmodified	_GLDELFVQV_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-MSMS	A375_MHC_IP_R2	2	510.67303466796875	2	510.274032	1018.53351	-0.81256	-0.00041463	-0.33752	-0.00017223	-1.1501	-0.00058686	510.2737876293639	128.64	0.86035	128.88	128.71	129.57	0.23946					29	16	4	0	0	0	0.005759	1	50505	50505		133.7	25.705	1	94058000			17398	9277	12578	12672	17021	17021					0.024986343491036678
GLDELFVQV	9	Unmodified	_GLDELFVQV_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-SECPEP	A375_MHC_IP_R2	2	1019.2561645507812	1	1019.54079	1018.53351	-0.035451	-3.6144E-05	-0.85491	-0.00087162	-0.89036	-0.00090776	1019.5398603907013	128.64	0.35394	128.88	128.65	129.01	0.23946					14	6	3	0	0	0	0.018928	1	50530	50530		99.799	14.527	1	61374000			17399	9277	12578	12672	17022	17022					0.024986343491036678
GLDEPRAEV	9	Unmodified	_GLDEPRAEV_					0	0	0			REV__ENST00000382031.5_1_15:43823430-43823490:+|nuORF	REV__ENST00000382031.5_1_15:43823430-43823490:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	494.1513977050781	2	493.251089	984.487624	-0.49991	-0.00024658	-0.41184	-0.00020314	-0.91175	-0.00044972	493.25090871375494	108.07	1.9397	108.83	108.1	110.04	0.75436					96	37	4	0	0	0	0.68216	1	40999	40999		8.5933	0	1	26419000	+		17400	24240	12579	12673	17023	17023					-0.005240108331463489
GLDGEPRTV	9	Unmodified	_GLDGEPRTV_					0	0	0			REV__nc|ENSG00000118276|Q9UBX8-2|B4GALT6	REV__nc|ENSG00000118276|Q9UBX8-2|B4GALT6	MULTI-SECPEP	A375_MHC_IP_R1	1	472.6451110839844	2	472.245806	942.47706	-0.38861	-0.00018352	-0.50115	-0.00023667	-0.88976	-0.00042019	472.245500759062	73.173	0.65878	73.173	72.728	73.386	0					18	12	2	0	0	0	0.62767	1	26601	26601		16.942	5.302	1	3156100	+		17401	18034	12580	12674	17024	17024					0.0035200651242348613
GLDGGHYTAY	10	Unmodified	_GLDGGHYTAY_					0	0	0		nc|ENSG00000138592|P40818-2|USP8;ENSG00000138592|ENST00000307179|USP8;ENST00000560379.1_1_15:50790733-50791282:+|nuORF;ENST00000419830.2_1_15:50786258-50791282:+|nuORF	nc|ENSG00000138592|P40818-2|USP8	nc|ENSG00000138592|P40818-2|USP8	MULTI-MSMS	A375_MHC_IP_R1	1	527.6351318359375	2	527.235439	1052.45632	-0.89233	-0.00047047	0.48998	0.00025833	-0.40235	-0.00021213	527.2356232095576	38.21	0.35575	38.21	38.016	38.371	0					10	6	2	0	0	0	0.053475	1	12963	12963		74.929	49.53	1	4914000			17402	5001	12581	12675	17025	17025					-0.06780583867248424
GLDGGHYTAY	10	Unmodified	_GLDGGHYTAY_					0	0	0		nc|ENSG00000138592|P40818-2|USP8;ENSG00000138592|ENST00000307179|USP8;ENST00000560379.1_1_15:50790733-50791282:+|nuORF;ENST00000419830.2_1_15:50786258-50791282:+|nuORF	nc|ENSG00000138592|P40818-2|USP8	nc|ENSG00000138592|P40818-2|USP8	MULTI-MSMS	A375_MHC_IP_R2	2	527.6348876953125	2	527.235439	1052.45632	-0.739	-0.00038963	-3.8688	-0.0020397	-4.6078	-0.0024294	527.733928513325	37.63	0.66512	38.405	38.074	38.739	0.77435					35	12	4	0	0	0	0.11068	1	13767	13767		61.357	29.052	1	6908600			17403	5001	12581	12675	17026	17026					-0.06780583867248424
GLDHPSVEV	9	Unmodified	_GLDHPSVEV_					0	0	0		ENSG00000095574|ENST00000368886|IKZF5	ENSG00000095574|ENST00000368886|IKZF5	ENSG00000095574|ENST00000368886|IKZF5	MULTI-SECPEP	A375_MHC_IP_R1	1	477.1405029296875	2	476.740357	951.46616	-0.064845	-3.0914E-05	-0.29524	-0.00014075	-0.36008	-0.00017167	476.7401713540775	45.187	0.50557	45.187	44.928	45.434	0					19	9	3	0	0	0	0.05755	1	15777	15777		61.357	39.611	1	2833900			17404	2046	12582	12676	17027	17027					-0.011513958618479592
GLDHPSVEV	9	Unmodified	_GLDHPSVEV_					0	0	0		ENSG00000095574|ENST00000368886|IKZF5	ENSG00000095574|ENST00000368886|IKZF5	ENSG00000095574|ENST00000368886|IKZF5	MULTI-MSMS	A375_MHC_IP_R2	2	476.59844970703125	2	476.740357	951.46616	-0.53057	-0.00025295	-0.14557	-6.9397E-05	-0.67614	-0.00032234	476.74026582981224	44.403	0.81166	45.172	44.782	45.594	0.7691					26	15	3	0	0	0	0.091096	1	16562	16562		52.268	21.632	1	3827000			17405	2046	12582	12676	17028	17028					-0.011513958618479592
GLDHYIERI	9	Unmodified	_GLDHYIERI_					0	0	0		ENST00000354485.5_1_9:676972-730286:+|nuORF;ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1	ENST00000354485.5_1_9:676972-730286:+|nuORF	ENST00000354485.5_1_9:676972-730286:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	372.93255615234375	3	372.532979	1114.57711	0.028576	1.0646E-05	-0.34476	-0.00012844	-0.31619	-0.00011779	372.532776827646	56.65	0.40871	57.4	57.203	57.612	0.75014					13	7	2	0	0	0	0.59266	1	21445	21445		10.899	6.7095	1	1521700			17406	2725	12583	12677	17029	17029					0.024402438462402642
GLDIDGIYRV	10	Unmodified	_GLDIDGIYRV_					0	0	0		nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12;nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MSMS	A375_MHC_IP_R1	1	560.7237548828125	2	560.803488	1119.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.583	1	91.583	91.083	92.083	0								0	0	0	0.026825	1	33649	33649		79.596	39.647	1				17407	6941	12584	12678	17030	17030					0.03741110643431966
GLDIEGVKTV	10	Unmodified	_GLDIEGVKTV_					0	0	0		DDX27|p.K691Rfs*4|1|0.39|ENSG00000124228|chr20:49241967-49241967|A/-|frameshift_variant;ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000471144.1_1_20:47852594-47852858:+|nuORF;ENST00000484427.5_1_20:47852594-47860368:+|nuORF	DDX27|p.K691Rfs*4|1|0.39|ENSG00000124228|chr20:49241967-49241967|A/-|frameshift_variant	DDX27|p.K691Rfs*4|1|0.39|ENSG00000124228|chr20:49241967-49241967|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1922607421875	2	515.792589	1029.57063	-0.57721	-0.00029772	0.80692	0.0004162	0.22971	0.00011848	515.7929961445135	64.571	0.71011	64.571	64.09	64.8	0					23	13	3	0	0	0	0.022742	1	23352	23352		117.84	45.915	1	4369900			17408	725	12585	12679	17031	17031					0.057023058948516336
GLDIEGVKTV	10	Unmodified	_GLDIEGVKTV_					0	0	0		DDX27|p.K691Rfs*4|1|0.39|ENSG00000124228|chr20:49241967-49241967|A/-|frameshift_variant;ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000471144.1_1_20:47852594-47852858:+|nuORF;ENST00000484427.5_1_20:47852594-47860368:+|nuORF	DDX27|p.K691Rfs*4|1|0.39|ENSG00000124228|chr20:49241967-49241967|A/-|frameshift_variant	DDX27|p.K691Rfs*4|1|0.39|ENSG00000124228|chr20:49241967-49241967|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	516.0518188476562	2	515.792589	1029.57063	-0.69933	-0.00036071	0.85745	0.00044227	0.15813	8.1561E-05	515.7925361711845	63.775	0.50748	64.515	64.292	64.8	0.74022					24	9	3	0	0	0	0.028101	1	24215	24215		98.73	44.897	1	4078400			17409	725	12585	12679	17032	17032					0.057023058948516336
GLDIPTVQV	9	Unmodified	_GLDIPTVQV_					0	0	0		ENSG00000105671|ENST00000247003|DDX49;ENST00000601772.1_1_19:19035054-19035967:+|nuORF	ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	MULTI-MSMS	A375_MHC_IP_R1	1	471.66845703125	2	471.26875	940.522947	-0.39725	-0.00018721	0.17245	8.1273E-05	-0.22479	-0.00010594	471.26878630154727	74.394	0.96332	74.394	73.74	74.704	0					29	18	3	0	0	0	0.25276	1	27084	27084		34.102	1.797	1	2816600			17410	2628	12586	12680	17033	17033					0.0503065169467618
GLDIPTVQV	9	Unmodified	_GLDIPTVQV_					0	0	0		ENSG00000105671|ENST00000247003|DDX49;ENST00000601772.1_1_19:19035054-19035967:+|nuORF	ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	MULTI-MSMS	A375_MHC_IP_R1	1	471.668701171875	2	471.26875	940.522947	-0.14801	-6.9754E-05	0.16492	7.7723E-05	0.01691	7.9691E-06	471.2687934822247	108.84	1.9808	108.84	108.41	110.39	0					106	38	5	0	0	0	0.0097266	3	39838	39838;40055;40258		118.89	43.206	1	157280000			17411	2628	12586	12680	17034;17035;17036	17034					0.0503065169467618
GLDIPTVQV	9	Unmodified	_GLDIPTVQV_					0	0	0		ENSG00000105671|ENST00000247003|DDX49;ENST00000601772.1_1_19:19035054-19035967:+|nuORF	ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	MULTI-MSMS	A375_MHC_IP_R2	2	471.668701171875	2	471.26875	940.522947	-0.58719	-0.00027673	0.29645	0.00013971	-0.29074	-0.00013702	471.2688649217052	108.14	1.7844	108.89	108.4	110.19	0.75436					95	34	5	0	0	0	0.0096397	2	40750	40750;40948		126.57	44.676	1	169030000			17412	2628	12586	12680	17037;17038	17037					0.0503065169467618
GLDIPTVQV	9	Unmodified	_GLDIPTVQV_					0	0	0		ENSG00000105671|ENST00000247003|DDX49;ENST00000601772.1_1_19:19035054-19035967:+|nuORF	ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	MULTI-SECPEP	A375_MHC_IP_R2	2	941.021484375	1	941.530224	940.522947	-0.21131	-0.00019895	0.35884	0.00033786	0.14754	0.00013891	941.5305056893566	108.08	1.5315	108.84	108.4	109.94	0.75436					92	29	5	0	0	0	0.036758	1	40972	40972		99.755	31.675	1	231820000			17413	2628	12586	12680	17039	17039					0.0503065169467618
GLDIPTVQV	9	Unmodified	_GLDIPTVQV_					0	0	0		ENSG00000105671|ENST00000247003|DDX49;ENST00000601772.1_1_19:19035054-19035967:+|nuORF	ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	MULTI-MATCH	A375_MHC_IP_R1	1		1	941.530224	940.522947	0.25118	0.00023649	0.15365	0.00014467	0.40483	0.00038116	941.5303433654615	108.84	1.7261	108.84	108.46	110.19	0	0.00022062	-0.00013437	NaN	99.755	92	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235870000			17414	2628	12586	12680							0.0503065169467618
GLDKAVPSL	9	Unmodified	_GLDKAVPSL_					0	0	0		ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	MULTI-MSMS	A375_MHC_IP_R2	2	450.66949462890625	2	450.263468	898.512382	-0.60052	-0.00027039	-0.040629	-1.8294E-05	-0.64115	-0.00028869	450.2627632092695	57.607	0.55956	58.356	58.12	58.679	0.74895					16	10	2	0	0	0	0.037683	1	21798	21798		69.105	3.8699	1	1375100			17415	2414	12587	12681	17040	17040					0.05906669040234647
GLDKAVPSL	9	Unmodified	_GLDKAVPSL_					0	0	0		ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	MULTI-MATCH	A375_MHC_IP_R1	1		2	450.263468	898.512382	-0.21392	-9.632E-05	0.6166	0.00027763	0.40269	0.00018131	450.2632631731535	58.478	0.55843	58.478	58.228	58.786	0	0.061209	0.00015949	NaN	69.105	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	920840			17416	2414	12587	12681							0.05906669040234647
GLDKQIKEI	9	Unmodified	_GLDKQIKEI_					0	0	0		ENST00000579147.5_1_17:61906826-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000581764.1_1_17:61907522-61908306:+|nuORF	ENST00000579147.5_1_17:61906826-61909326:+|nuORF	ENST00000579147.5_1_17:61906826-61909326:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	522.7081909179688	2	522.308406	1042.60226	-0.52704	-0.00027528	0.056648	2.9588E-05	-0.4704	-0.00024569	522.3083892206197	34.662	0.40513	34.662	34.405	34.81	0					16	7	3	0	0	0	0.011043	1	11430	11430		143.21	46.278	1	9531800			17417	1861	12588	12682	17041	17041					0.08266298648823067
GLDKQIKEI	9	Unmodified	_GLDKQIKEI_					0	0	0		ENST00000579147.5_1_17:61906826-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000581764.1_1_17:61907522-61908306:+|nuORF	ENST00000579147.5_1_17:61906826-61909326:+|nuORF	ENST00000579147.5_1_17:61906826-61909326:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	522.7078247070312	2	522.308406	1042.60226	-1.0904	-0.00056954	0.36546	0.00019088	-0.72497	-0.00037866	522.3085585850434	33.873	0.45477	34.625	34.348	34.803	0.75225					18	8	3	0	0	0	0.018833	1	12150	12150		107.56	38.225	1	7997600			17418	1861	12588	12682	17042	17042					0.08266298648823067
GLDLTEEIS	9	Unmodified	_GLDLTEEIS_					0	0	0			REV__tr|U7SK73|U7SK73_FUSNUV-typeATPsynthasebetachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpBPE=3SV=1	REV__tr|U7SK73|U7SK73_FUSNUV-typeATPsynthasebetachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpBPE=3SV=1	MSMS	A375_MHC_IP_R2	2	488.6709899902344	2	488.745305	975.476056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.837	1	66.575	66.075	67.075	0.73811								0	0	0	0.15283	1	24963	24963		16.942	3.0362	1		+		17419	28245	12589	12683	17043	17043					-0.012662526471217461
GLDNETHFL	9	Unmodified	_GLDNETHFL_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	A375_MHC_IP_R1	1	523.6511840820312	2	523.251089	1044.48762	-0.65948	-0.00034508	0.45965	0.00024051	-0.19984	-0.00010456	523.2511963274642	66.097	0.81178	66.097	65.666	66.478	0					31	15	4	0	0	0	0.10411	1	23906	23906		49.933	15.831	1	7423900			17420	1612	12590	12684	17044	17044					-0.032840108331583906
GLDNETHFL	9	Unmodified	_GLDNETHFL_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	A375_MHC_IP_R2	2	523.6508178710938	2	523.251089	1044.48762	-0.6502	-0.00034022	-0.2204	-0.00011532	-0.8706	-0.00045554	523.2509653638637	65.283	0.5579	66.021	65.715	66.273	0.73812					25	10	3	0	0	0	0.059859	1	24725	24725		71.922	39.617	1	6293400			17421	1612	12590	12684	17045	17045					-0.032840108331583906
GLDNQIQEI	9	Unmodified	_GLDNQIQEI_					0	0	0		nc|ENSG00000100764|P62191-2|PSMC1;ENSG00000100764|ENST00000261303|PSMC1;ENST00000434820.1_1_2:17566863-17567166:+|nuORF	nc|ENSG00000100764|P62191-2|PSMC1	nc|ENSG00000100764|P62191-2|PSMC1	MULTI-MSMS	A375_MHC_IP_R2	2	515.2024536132812	2	515.264196	1028.51384	-0.95575	-0.00049246	-0.1342	-6.9148E-05	-1.0899	-0.00056161	515.2640535541312	72.212	0.96214	72.946	72.669	73.632	0.73421					38	18	3	0	0	0	0.06083	2	27423	27423;27463		60.074	14.374	1	14418000			17422	2217	12591	12685	17046;17047	17046					0.0007225833833217621
GLDPARVNV	9	Unmodified	_GLDPARVNV_					0	0	0		nc|ENSG00000146701|P40926-2|MDH2;ENSG00000146701|ENST00000315758|MDH2;ENST00000424167.2_1_7:75689738-75694307:+|nuORF	nc|ENSG00000146701|P40926-2|MDH2	nc|ENSG00000146701|P40926-2|MDH2	MULTI-SECPEP	A375_MHC_IP_R1	1	471.1479187011719	2	470.764166	939.513779	-0.42871	-0.00020182	0.2721	0.0001281	-0.1566	-7.3723E-05	470.76417992001575	46.468	0.85868	46.468	45.941	46.799	0					42	16	4	0	0	0	0.022401	1	16301	16301		89.401	21.32	1	20522000			17423	5632	12592	12686	17048	17048					0.04160303129003751
GLDPARVNV	9	Unmodified	_GLDPARVNV_					0	0	0		nc|ENSG00000146701|P40926-2|MDH2;ENSG00000146701|ENST00000315758|MDH2;ENST00000424167.2_1_7:75689738-75694307:+|nuORF	nc|ENSG00000146701|P40926-2|MDH2	nc|ENSG00000146701|P40926-2|MDH2	MULTI-SECPEP	A375_MHC_IP_R2	2	471.14764404296875	2	470.764166	939.513779	-0.60564	-0.00028511	0.57602	0.00027117	-0.029623	-1.3945E-05	470.76429066339824	45.601	0.7567	46.366	45.897	46.654	0.76518					38	14	4	0	0	0	0.028087	1	17066	17066		86.332	40.311	1	20355000			17424	5632	12592	12686	17049	17049					0.04160303129003751
GLDPAVIKV	9	Unmodified	_GLDPAVIKV_					0	0	0		ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	MULTI-SECPEP	A375_MHC_IP_R1	1	456.6813659667969	2	456.28166	910.548768	-0.10539	-4.8089E-05	-0.071185	-3.248E-05	-0.17658	-8.0569E-05	456.2815240128254	71.221	0.56377	71.221	70.902	71.465	0					16	10	2	0	0	0	0.10103	1	25869	25869		62.573	26.446	1	2958800			17425	6996	12593	12687	17050	17050					0.08991545936953571
GLDPAVIKV	9	Unmodified	_GLDPAVIKV_					0	0	0		ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	MULTI-SECPEP	A375_MHC_IP_R2	2	456.6812438964844	2	456.28166	910.548768	-0.20143	-9.191E-05	-0.43521	-0.00019858	-0.63664	-0.00029049	456.2814092017486	70.46	0.55807	71.194	70.895	71.453	0.73421					23	10	3	0	0	0	0.04395	1	26691	26691		81.89	39.796	1	3565500			17426	6996	12593	12687	17051	17051					0.08991545936953571
GLDPDREEF	9	Unmodified	_GLDPDREEF_					0	0	0			REV__ENSG00000089639|ENST00000203556|GMIP	REV__ENSG00000089639|ENST00000203556|GMIP	MSMS	A375_MHC_IP_R1	1	539.2086181640625	2	539.246003	1076.47745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.597	1	42.597	42.097	43.097	0								0	0	0	0.15486	1	14767	14767		11.64	0.52583	1		+		17427	16915	12594	12688	17052	17052					-0.057726185583760525
GLDPGKQIKL	10	Unmodified	_GLDPGKQIKL_					0	0	0		ENSG00000095002|ENST00000233146|MSH2;nc|ENSG00000095002|P43246-2|MSH2	ENSG00000095002|ENST00000233146|MSH2	ENSG00000095002|ENST00000233146|MSH2	MULTI-MSMS	A375_MHC_IP_R1	1	357.2851867675781	3	356.885241	1067.63389	-0.013025	-4.6483E-06	0.0097902	3.494E-06	-0.0032344	-1.1543E-06	356.8851958993888	46.456	0.5041	46.456	46.195	46.699	0					25	9	4	0	0	0	0.43567	1	16298	16298		32.037	19.863	1	6089000			17428	2032	12595	12689	17053	17053					0.10278291402732975
GLDPGKQIKL	10	Unmodified	_GLDPGKQIKL_					0	0	0		ENSG00000095002|ENST00000233146|MSH2;nc|ENSG00000095002|P43246-2|MSH2	ENSG00000095002|ENST00000233146|MSH2	ENSG00000095002|ENST00000233146|MSH2	MULTI-MSMS	A375_MHC_IP_R2	2	357.2851867675781	3	356.885241	1067.63389	-0.22711	-8.1052E-05	-0.048121	-1.7174E-05	-0.27523	-9.8226E-05	356.88517908936257	45.585	0.50414	46.35	46.099	46.603	0.76518					24	9	4	0	0	0	0.26783	1	17043	17043		42.312	17.431	1	5018500			17429	2032	12595	12689	17054	17054					0.10278291402732975
GLDPNKPPEL	10	Unmodified	_GLDPNKPPEL_					0	0	0		nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12	nc|ENSG00000126464|Q9ULL5-2|PRR12	nc|ENSG00000126464|Q9ULL5-2|PRR12	MULTI-MSMS	A375_MHC_IP_R1	1	540.1839599609375	2	540.290214	1078.56587	-0.75623	-0.00040859	0.19459	0.00010513	-0.56165	-0.00030345	540.2902830350364	53.156	0.81087	53.156	52.744	53.555	0					24	15	2	0	0	0	0.56097	1	18796	18796		23.79	5.6434	1	4879200			17430	4045	12596	12690	17055	17055					0.029734217520854145
GLDPNKPPEL	10	Unmodified	_GLDPNKPPEL_					0	0	0		nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12	nc|ENSG00000126464|Q9ULL5-2|PRR12	nc|ENSG00000126464|Q9ULL5-2|PRR12	MULTI-MSMS	A375_MHC_IP_R2	2	540.6895141601562	2	540.290214	1078.56587	-1.28	-0.00069159	0.64391	0.0003479	-0.63613	-0.0003437	540.2905272758566	52.522	0.70828	53.274	52.831	53.54	0.75225					25	13	2	0	0	0	0.23154	1	19742	19742		46.022	15.386	1	5292800			17431	4045	12596	12690	17056	17056					0.029734217520854145
GLDPRLLQAV	10	Unmodified	_GLDPRLLQAV_					0	0	0		nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56	nc|ENSG00000136271|Q9NY93-2|DDX56	nc|ENSG00000136271|Q9NY93-2|DDX56	MULTI-SECPEP	A375_MHC_IP_R1	1	541.8821411132812	2	541.321848	1080.62914	-0.37086	-0.00020075	1.1087	0.00060018	0.73788	0.00039943	541.8243112777922	92.683	0.76137	92.683	92.16	92.922	0					21	14	2	0	0	0	0.68963	1	34100	34100		28.495	21.771	1	1963000			17432	4776	12597	12691	17057	17057					0.09205407259992171
GLDPSGARLV	10	Unmodified	_GLDPSGARLV_					0	0	0		ENST00000511906.5_1_5:37379391-37721408:+|nuORF;ENSG00000082068|ENST00000265107|WDR70	ENST00000511906.5_1_5:37379391-37721408:+|nuORF	ENST00000511906.5_1_5:37379391-37721408:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	493.1768798828125	2	492.777274	983.539994	-0.90408	-0.00044551	0.15823	7.7971E-05	-0.74585	-0.00036754	492.77735897968563	53.898	0.9668	54.649	54.353	55.32	0.75105					42	18	4	0	0	0	0.081287	1	20313	20313		80.676	36.904	1	13356000			17433	1752	12598	12692	17058	17058					0.04756572300482276
GLDPSNKLYY	10	Unmodified	_GLDPSNKLYY_					0	0	0			REV__nc|ENSG00000055917|Q8TB72-2|PUM2	REV__nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-MSMS	A375_MHC_IP_R1	1	586.677490234375	2	585.295496	1168.57644	-0.25372	-0.0001485	0.43676	0.00025564	0.18304	0.00010713	585.296071461277	74.968	0.70921	74.968	74.704	75.413	0					25	13	3	0	0	0	0.62155	1	27237	27237		19.257	10.281	1	1896300	+		17434	16418	12599	12693	17059	17059					-0.0011059559349178016
GLDPTQFRV	9	Unmodified	_GLDPTQFRV_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1;ENST00000494204.1_1_X:24833141-24859977:+|nuORF	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-SECPEP	A375_MHC_IP_R1	1	517.177490234375	2	516.777274	1031.53999	-0.59989	-0.00031001	-0.18711	-9.6693E-05	-0.787	-0.0004067	516.777136510788	76.432	0.70911	76.432	76.067	76.776	0					29	13	4	0	0	0	0.16676	1	27834	27834		58.679	20.705	1	4892800			17435	2330	12600	12694	17060	17060					0.02548572300474916
GLDPTQFRV	9	Unmodified	_GLDPTQFRV_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1;ENST00000494204.1_1_X:24833141-24859977:+|nuORF	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1473999023438	2	516.777274	1031.53999	-0.76455	-0.0003951	-0.39066	-0.00020188	-1.1552	-0.00059699	516.7770310723027	75.655	1.0681	76.395	75.775	76.843	0.74052					37	20	3	0	0	0	0.053904	1	28697	28697		85.272	47.298	1	5603700			17436	2330	12600	12694	17061	17061					0.02548572300474916
GLDQDGEARP	10	Unmodified	_GLDQDGEARP_					0	0	0		ENST00000469841.5_1_3:57131519-57204269:-|nuORF;nc|ENSG00000144730|Q8NFM7-4|IL17RD;nc|ENSG00000144730|Q8NFM7-3|IL17RD;ENSG00000144730|ENST00000296318|IL17RD;nc|ENSG00000144730|Q8NFM7-2|IL17RD	ENST00000469841.5_1_3:57131519-57204269:-|nuORF	ENST00000469841.5_1_3:57131519-57204269:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	529.64697265625	2	529.249077	1056.4836	-0.56454	-0.00029878	-3.0227	-0.0015998	-3.5873	-0.0018986	529.2473570927906	128.86	0.20456	128.86	128.73	128.94	0					5	3	2	0	0	0	0.85226	1	49546	49546		20.454	0	1	4098900			17437	5510	12601	12695	17062	17062					-0.042381003268701534
GLDQYRDQY	9	Unmodified	_GLDQYRDQY_					0	0	0			REV__ENSG00000140990|ENST00000268668|NDUFB10	REV__ENSG00000140990|ENST00000268668|NDUFB10	MULTI-MSMS	A375_MHC_IP_R1	1	579.6658325195312	2	579.264727	1156.5149	-0.068879	-3.9899E-05	1.2389	0.00071766	1.17	0.00067777	579.26544379959	53.775	0.508	53.775	53.505	54.013	0					20	9	3	0	0	0	0.68216	1	19186	19186		8.5933	0.68312	1	2834400	+		17438	19237	12602	12696	17063	17063					-0.05709527292765415
GLDRFIENL	9	Unmodified	_GLDRFIENL_					0	0	0			REV__nc|ENSG00000124222|O14662-6|STX16	REV__nc|ENSG00000124222|O14662-6|STX16	MULTI-SECPEP	A375_MHC_IP_R1	1	539.12451171875	2	538.790381	1075.56621	-0.57772	-0.00031127	-0.28703	-0.00015465	-0.86475	-0.00046592	538.7904277065755	47.625	0.35211	47.625	47.416	47.768	0					11	6	2	0	0	0	0.69507	1	16796	16796		5.7319	2.1354	1	1305500	+		17439	18287	12603	12697	17064	17064					0.03144841471953441
GLDRLNVTV	9	Unmodified	_GLDRLNVTV_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-SECPEP	A375_MHC_IP_R1	1	494.1847839355469	2	493.785099	985.555644	-0.40958	-0.00020224	0.15559	7.6827E-05	-0.25399	-0.00012542	493.7851413726468	64.676	0.76208	64.676	64.393	65.156	0					42	14	4	0	0	0	0.061442	1	23362	23362		82.529	19.957	1	36496000			17440	6196	12604	12698	17065	17065					0.06228858817519267
GLDRLNVTV	9	Unmodified	_GLDRLNVTV_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1463928222656	2	493.785099	985.555644	-0.42662	-0.00021066	-0.047818	-2.3612E-05	-0.47444	-0.00023427	493.78505755083165	63.883	0.76308	64.623	64.241	65.004	0.74022					37	14	3	0	0	0	0.048303	1	24219	24219		83.429	11.506	1	40160000			17441	6196	12604	12698	17066	17066					0.06228858817519267
GLDRNAPSV	9	Unmodified	_GLDRNAPSV_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3;CSTF3|p.P239L|1|0.39|ENSG00000176102|chr11:33102287-33102287|G/A|missense_variant	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	A375_MHC_IP_R1	1	465.14581298828125	2	464.745973	927.477394	-0.28054	-0.00013038	-0.091844	-4.2684E-05	-0.37238	-0.00017306	464.7458574529166	28.784	0.55672	28.784	28.541	29.098	0					21	10	3	0	0	0	0.0061124	1	8921	8921		133.05	61.13	1	8738600			17442	8001	12605	12699	17067	17067					0.010754262322734576
GLDRNAPSV	9	Unmodified	_GLDRNAPSV_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3;CSTF3|p.P239L|1|0.39|ENSG00000176102|chr11:33102287-33102287|G/A|missense_variant	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	A375_MHC_IP_R2	2	465.1457824707031	2	464.745973	927.477394	-0.84016	-0.00039046	0.088795	4.1267E-05	-0.75137	-0.0003492	464.7460213991896	28.133	0.45618	28.812	28.604	29.06	0.67857					19	8	4	0	0	0	0.0098926	1	9684	9684		118.07	46.146	1	8578000			17443	8001	12605	12699	17068	17068					0.010754262322734576
GLDSGFHSV	9	Unmodified	_GLDSGFHSV_					0	0	0		ENST00000467201.5_1_7:100174858-100176198:-|nuORF;LRCH4|p.Q533Rfs*8|1|0.15|ENSG00000077454|chr7:100576279-100576279|G/-|frameshift_variant;ENSG00000077454|ENST00000310300|LRCH4	ENST00000467201.5_1_7:100174858-100176198:-|nuORF;ENSG00000077454|ENST00000310300|LRCH4	ENSG00000077454|ENST00000310300|LRCH4	MULTI-SECPEP	A375_MHC_IP_R1	1	460.1192321777344	2	459.719424	917.424296	0.24255	0.00011151	-0.3393	-0.00015598	-0.09675	-4.4478E-05	459.7191901713356	45.152	0.55682	45.152	44.827	45.384	0					20	10	3	0	0	0	0.3213	1	15758	15758		46.021	17.534	1	4155300			17444	12277;1656	12606	12700	17069	17069					-0.037719515503795265
GLDSGFHSV	9	Unmodified	_GLDSGFHSV_					0	0	0		ENST00000467201.5_1_7:100174858-100176198:-|nuORF;LRCH4|p.Q533Rfs*8|1|0.15|ENSG00000077454|chr7:100576279-100576279|G/-|frameshift_variant;ENSG00000077454|ENST00000310300|LRCH4	ENST00000467201.5_1_7:100174858-100176198:-|nuORF;ENSG00000077454|ENST00000310300|LRCH4	ENSG00000077454|ENST00000310300|LRCH4	MULTI-MSMS	A375_MHC_IP_R2	2	459.6634826660156	2	459.719424	917.424296	-0.34168	-0.00015708	-0.3885	-0.0001786	-0.73018	-0.00033568	459.71928362593803	44.256	0.60742	45.025	44.732	45.34	0.7691					28	11	4	0	0	0	0.12592	1	16577	16577		46.021	24.274	1	4862200			17445	12277;1656	12606	12700	17070	17070					-0.037719515503795265
GLDSPKAEV	9	Unmodified	_GLDSPKAEV_					0	0	0		nc|ENSG00000113269|Q86XS8-2|RNF130;ENSG00000113269|ENST00000521389|RNF130	nc|ENSG00000113269|Q86XS8-2|RNF130	nc|ENSG00000113269|Q86XS8-2|RNF130	MULTI-SECPEP	A375_MHC_IP_R1	1	458.64251708984375	2	458.242732	914.470912	-0.5635	-0.00025822	0.16143	7.3974E-05	-0.40207	-0.00018425	458.24269776421005	30.578	0.60672	30.578	30.301	30.908	0					22	11	3	0	0	0	0.10362	1	9724	9724		72.968	6.5113	1	7293100			17446	3136	12607	12701	17071	17071					0.010254882809022092
GLDSPKAEV	9	Unmodified	_GLDSPKAEV_					0	0	0		nc|ENSG00000113269|Q86XS8-2|RNF130;ENSG00000113269|ENST00000521389|RNF130	nc|ENSG00000113269|Q86XS8-2|RNF130	nc|ENSG00000113269|Q86XS8-2|RNF130	MULTI-MSMS	A375_MHC_IP_R2	2	458.6426086425781	2	458.242732	914.470912	-0.68308	-0.00031302	0.27356	0.00012535	-0.40953	-0.00018766	458.242785763723	29.864	0.55765	30.563	30.385	30.942	0.69872					24	10	3	0	0	0	0.02114	1	10467	10467		82.529	24.807	1	9060800			17447	3136	12607	12701	17072	17072					0.010254882809022092
GLDSQFVEV	9	Unmodified	_GLDSQFVEV_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	MULTI-MSMS	A375_MHC_IP_R1	1	497.647705078125	2	497.248015	992.481476	-0.27542	-0.00013695	0.0075846	3.7714E-06	-0.26784	-0.00013318	497.2479634446139	92.063	0.60583	92.063	91.807	92.413	0					21	11	2	0	0	0	0.009271	1	33824	33824		103.75	21.858	1	3198400			17448	4326	12608	12702	17073	17073					-0.015065290646589347
GLDSQFVEV	9	Unmodified	_GLDSQFVEV_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	MULTI-MSMS	A375_MHC_IP_R2	2	497.64813232421875	2	497.248015	992.481476	-0.39668	-0.00019725	0.21777	0.00010829	-0.17891	-8.896E-05	497.2480184533167	91.391	0.86201	92.125	91.818	92.68	0.7345					22	16	2	0	0	0	0.0097266	1	34750	34750		111.29	36.358	1	3806300			17449	4326	12608	12702	17074	17074					-0.015065290646589347
GLDSQFVGV	9	Unmodified	_GLDSQFVGV_					0	0	0		nc|ENSG00000130821|P48029-3|SLC6A8;nc|ENSG00000130821|P48029-4|SLC6A8;ENSG00000130821|ENST00000253122|SLC6A8	nc|ENSG00000130821|P48029-3|SLC6A8	nc|ENSG00000130821|P48029-3|SLC6A8	MULTI-SECPEP	A375_MHC_IP_R1	1	461.63726806640625	2	461.23745	920.460347	-0.11297	-5.2108E-05	0.054498	2.5136E-05	-0.058476	-2.6971E-05	461.2374230505481	88.653	0.71098	88.653	88.358	89.069	0					27	13	3	0	0	0	0.047455	1	32542	32542		88.904	41.155	1	4557600			17450	4286	12609	12703	17075	17075					-0.0030649437351257802
GLDSQFVGV	9	Unmodified	_GLDSQFVGV_					0	0	0		nc|ENSG00000130821|P48029-3|SLC6A8;nc|ENSG00000130821|P48029-4|SLC6A8;ENSG00000130821|ENST00000253122|SLC6A8	nc|ENSG00000130821|P48029-3|SLC6A8	nc|ENSG00000130821|P48029-3|SLC6A8	MULTI-MSMS	A375_MHC_IP_R2	2	461.90191650390625	2	461.23745	920.460347	-0.39549	-0.00018242	0.30957	0.00014278	-0.085925	-3.9632E-05	461.2374683354499	87.984	1.0129	88.716	88.418	89.431	0.7318					32	19	3	0	0	0	0.018546	1	33419	33419		85.272	37.523	1	4917800			17451	4286	12609	12703	17076	17076					-0.0030649437351257802
GLDSSVSFV	9	Unmodified	_GLDSSVSFV_					0	0	0		ENSG00000100726|ENST00000262319|TELO2	ENSG00000100726|ENST00000262319|TELO2	ENSG00000100726|ENST00000262319|TELO2	MULTI-MSMS	A375_MHC_IP_R1	1	911.253173828125	1	910.451639	909.444362	-0.14114	-0.0001285	-0.31317	-0.00028512	-0.4543	-0.00041362	910.451636131155	91.695	0.60606	91.695	91.401	92.007	0					25	11	3	0	0	0	0.0090669	1	33700	33700		100.37	45.598	1	7439900			17452	2213	12610	12704	17077	17077					-0.013982006104129141
GLDSSVSFV	9	Unmodified	_GLDSSVSFV_					0	0	0		ENSG00000100726|ENST00000262319|TELO2	ENSG00000100726|ENST00000262319|TELO2	ENSG00000100726|ENST00000262319|TELO2	MULTI-MATCH	A375_MHC_IP_R2	2		1	910.451639	909.444362	-0.27445	-0.00024987	0.00067704	6.1641E-07	-0.27377	-0.00024926	910.4515939067949	90.948	0.80992	91.683	91.261	92.071	0.7345	-0.0059426	0.0001551	NaN	100.37	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7097600			17453	2213	12610	12704							-0.013982006104129141
GLDVGCNSGV	10	Unmodified	_GLDVGCNSGV_					0	0	0		ENST00000550861.1_1_12:50236507-50236870:-|nuORF	ENST00000550861.1_1_12:50236507-50236870:-|nuORF	ENST00000550861.1_1_12:50236507-50236870:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	461.3133544921875	2	460.710742	919.406931	-0.23618	-0.00010881	-0.53948	-0.00024855	-0.77566	-0.00035736	460.7104413056767	74.741	0.45661	74.741	74.502	74.958	0					14	8	2	0	0	0	0.92389	1	27154	27154		7.2892	5.445	1	1835000			17454	13375	12611	12705	17078	17078					-0.055996151476847444
GLDWLSHEL	9	Unmodified	_GLDWLSHEL_					0	0	0		ENSG00000004059|ENST00000000233|ARF5;ENST00000463733.5_1_7:127230086-127231350:+|nuORF	ENSG00000004059|ENST00000000233|ARF5	ENSG00000004059|ENST00000000233|ARF5	MULTI-MSMS	A375_MHC_IP_R1	1	535.6687622070312	2	535.269281	1068.52401	-0.46235	-0.00024748	-0.12483	-6.6817E-05	-0.58718	-0.0003143	535.2691581840991	107.32	0.61412	107.32	106.93	107.54	0					23	10	3	0	0	0	0.050162	1	39382	39382		64.236	35.749	1	3561900			17455	863	12612	12706	17079	17079					-0.007511339364327796
GLDWLSHEL	9	Unmodified	_GLDWLSHEL_					0	0	0		ENSG00000004059|ENST00000000233|ARF5;ENST00000463733.5_1_7:127230086-127231350:+|nuORF	ENSG00000004059|ENST00000000233|ARF5	ENSG00000004059|ENST00000000233|ARF5	MULTI-SECPEP	A375_MHC_IP_R2	2	535.6689453125	2	535.269281	1068.52401	-0.86714	-0.00046415	0.11034	5.9063E-05	-0.7568	-0.00040509	535.2693332426497	106.42	0.55981	107.18	106.83	107.39	0.75977					21	10	3	0	0	0	0.064992	1	40216	40216		68.081	48.824	1	2468200			17456	863	12612	12706	17080	17080					-0.007511339364327796
GLECYQGSY	9	Unmodified	_GLECYQGSY_					0	0	0			REV__ATL3|p.R497C|1|0.32|ENSG00000184743|chr11:63631090-63631090|G/A|missense_variant	REV__ATL3|p.R497C|1|0.32|ENSG00000184743|chr11:63631090-63631090|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	510.2111511230469	2	510.210575	1018.4066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.293	1	46.293	45.793	46.793	0								0	0	0	0.15486	1	16234	16234		13.508	0	1		+		17457	15472	12613	12707	17081	17081					-0.10187034867544753
GLEDQLLSV	9	Unmodified	_GLEDQLLSV_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-MSMS	A375_MHC_IP_R2	2	487.6638488769531	2	487.263665	972.512776	-0.47343	-0.00023069	0.063366	3.0876E-05	-0.41007	-0.00019981	487.2636568624062	87.104	1.2653	87.837	87.306	88.571	0.733					57	24	4	0	0	0	0.018546	1	33035	33035		85.272	0	1	34074000			17458	9182	12614	12708	17082	17082					0.02542043969435781
GLEEALKLKD	10	Unmodified	_GLEEALKLKD_					0	0	0		tr|U7SST0|U7SST0_FUSNUElectrontransferflavoproteinbetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01366PE=3SV=1	tr|U7SST0|U7SST0_FUSNUElectrontransferflavoproteinbetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01366PE=3SV=1	tr|U7SST0|U7SST0_FUSNUElectrontransferflavoproteinbetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01366PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	372.60150146484375	3	372.548406	1114.62339	0.14832	5.5257E-05	0.28575	0.00010646	0.43407	0.00016171	372.54846561476677	66.249	1.2204	66.249	65.871	67.091	0					69	23	5	0	0	0	0.70012	1	24035	24035		7.4771	1.9538	1	63796000			17459	29649	12615	12709	17083	17083					0.0706626395767671
GLEEIVFGF	9	Unmodified	_GLEEIVFGF_					0	0	0		ENSG00000163982|ENST00000296358|OTOP1	ENSG00000163982|ENST00000296358|OTOP1	ENSG00000163982|ENST00000296358|OTOP1	MSMS	A375_MHC_IP_R1	1	505.6948547363281	2	505.7633	1009.51205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.86	1	114.86	114.36	115.36	0								0	0	0	0.15427	1	42120	42120		14.582	3.4672	1				17460	6757	12616	12710	17084	17084					0.0076724932038132465
GLEELTPVH	9	Unmodified	_GLEELTPVH_					0	0	0			REV__nc|ENSG00000133121|Q9Y3M8-4|STARD13	REV__nc|ENSG00000133121|Q9Y3M8-4|STARD13	MULTI-SECPEP	A375_MHC_IP_R1	1	498.1636047363281	2	497.763832	993.513111	-0.41013	-0.00020415	-0.039934	-1.9878E-05	-0.45007	-0.00022403	497.76388323486594	64.267	0.55869	64.267	64.09	64.649	0					15	10	2	0	0	0	0.55359	1	23277	23277		21.747	0	1	2607000	+		17461	18709	12617	12711	17085	17085					0.016094636892717062
GLELYKLKA	9	Unmodified	_GLELYKLKA_					0	0	0			REV__ENSG00000164061|ENST00000296452|BSN	REV__ENSG00000164061|ENST00000296452|BSN	MULTI-SECPEP	A375_MHC_IP_R2	2	518.2155151367188	2	517.815867	1033.61718	-0.65036	-0.00033676	0.32811	0.0001699	-0.32225	-0.00016687	517.8160089339747	46.152	0.40361	46.917	46.704	47.108	0.76519					12	7	2	0	0	0	0.50702	1	17294	17294		13.906	0	1	2248900	+		17462	20443	12618	12712	17086	17086					0.10171790516801593
GLENDLKSV	9	Unmodified	_GLENDLKSV_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-SECPEP	A375_MHC_IP_R2	2	488.4690856933594	2	487.761289	973.508025	-0.86515	-0.00042199	0.91374	0.00044569	0.048582	2.3696E-05	487.76196778791257	49.433	0.6065	50.19	49.894	50.5	0.75737					17	11	2	0	0	0	0.47674	1	18549	18549		23.79	7.6407	1	2641300			17463	7485	12619	12713	17087	17087					0.02021159826665553
GLEPRERDAWI	11	Unmodified	_GLEPRERDAWI_					0	0	0		ENST00000313146.10_1_1:156697916-156698111:-|nuORF	ENST00000313146.10_1_1:156697916-156698111:-|nuORF	ENST00000313146.10_1_1:156697916-156698111:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	448.1268005371094	3	447.901843	1340.6837	-0.067249	-3.0121E-05	-0.060518	-2.7106E-05	-0.12777	-5.7227E-05	447.9016254285179	44.108	0.3057	44.108	43.859	44.165	0					9	5	2	0	0	0	0.99625	1	15377	15377		7.4771	3.6007	1	732940			17464	10640	12620	12714	17088	17088					0.026983743407527072
GLEQAVDNF	9	Unmodified	_GLEQAVDNF_					0	0	0		ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	MSMS	A375_MHC_IP_R2	2	496.6769714355469	2	496.737814	991.461075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.219	1	26.879	26.379	27.379	0.65992								0	0	0	0.15069	1	8842	8842		20.454	1.1966	1				17465	5936	12621	12715	17089	17089					-0.03499699724477523
GLEQQLTELNW	11	Unmodified	_GLEQQLTELNW_					0	0	0			REV__ENST00000521792.2_1_8:43126156-43127029:-|nuORF	REV__ENST00000521792.2_1_8:43126156-43127029:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	666.2353515625	2	665.835517	1329.65648	-0.94042	-0.00062617	0.59556	0.00039654	-0.34486	-0.00022962	665.835879228436	68.234	0.40613	68.234	68.006	68.412	0					12	7	2	0	0	0	0.71476	1	24748	24748		14.405	1.3629	1	1706200	+		17466	25721	12622	12716	17090	17090					0.004838460097062125
GLERGLVEA	9	Unmodified	_GLERGLVEA_					0	0	0			REV__tr|U7SFU1|U7SFU1_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02233PE=3SV=1	REV__tr|U7SFU1|U7SFU1_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02233PE=3SV=1	MSMS	A375_MHC_IP_R2	2	472.1841735839844	2	472.263999	942.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.812	1	78.555	78.055	79.055	0.74293								0	0	0	0.13141	1	29547	29547		32.305	2.0807	1		+		17467	28172	12623	12717	17091	17091					0.039888834091470926
GLERNLAV	8	Unmodified	_GLERNLAV_					0	0	0		nc|ENSG00000163554|P02549-2|SPTA1;ENSG00000163554|ENST00000643759|SPTA1	nc|ENSG00000163554|P02549-2|SPTA1	nc|ENSG00000163554|P02549-2|SPTA1	MSMS	A375_MHC_IP_R2	2	436.15216064453125	2	436.253434	870.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.12	1	101.88	101.38	102.38	0.76428								0	0	0	0.16876	1	38333	38333		11.114	0	1				17468	6683	12624	12718	17092	17092					0.051889181002820806
GLERRWLAV	9	Unmodified	_GLERRWLAV_					0	0	0			REV__ENST00000589515.2_1_19:2343134-2351610:+|nuORF	REV__ENST00000589515.2_1_19:2343134-2351610:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6759033203125	2	550.322183	1098.62981	-0.68164	-0.00037512	-1.5286	-0.00084125	-2.2103	-0.0012164	550.3210429607406	79.43	0.3541	80.174	80.047	80.401	0.74474					10	6	2	0	0	0	0.63327	1	30168	30168		18.146	0	1	1940200	+		17469	16116	12625	12719	17093	17093					0.08444246699696123
GLESDHTSGW	10	Unmodified	_GLESDHTSGW_					0	0	0		ENST00000289672.6_1_7:47853565-47855013:-|nuORF	ENST00000289672.6_1_7:47853565-47855013:-|nuORF	ENST00000289672.6_1_7:47853565-47855013:-|nuORF	MSMS	A375_MHC_IP_R2	2	544.633544921875	2	544.735803	1087.45705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.916	1	73.651	73.151	74.151	0.73541								0	0	0	0.15308	1	27678	27678		10.824	0.75	1				17470	10466	12626	12720	17094	17094					-0.08317789218176586
GLETRRYPV	9	Unmodified	_GLETRRYPV_					0	0	0			REV__ENST00000503489.1_1_5:92023847-92023895:-|nuORF	REV__ENST00000503489.1_1_5:92023847-92023895:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	364.9232177734375	3	364.204974	1089.59309	-0.054116	-1.9709E-05	-0.76802	-0.00027972	-0.82214	-0.00029943	364.2047320942375	32.235	0.50769	32.972	32.654	33.162	0.73692					13	9	2	0	0	0	0.69507	1	11413	11413		9.3831	6.6479	1	9231800	+		17471	25516	12627	12721	17095	17095					0.05187950083131909
GLETSLLPPP	10	Unmodified	_GLETSLLPPP_					0	0	0			REV__ENST00000528057.5_2_11:64139022-64139445:+|nuORF	REV__ENST00000528057.5_2_11:64139022-64139445:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	512.6893310546875	2	512.289682	1022.56481	-0.47736	-0.00024455	-1.2342	-0.00063225	-1.7115	-0.00087679	512.2888139541507	74.121	0.60907	74.121	73.893	74.502	0					18	11	2	0	0	0	0.72086	1	27021	27021		13.042	7.3106	1	2657200	+		17472	25799	12628	12722	17096	17096					0.05443207383189019
GLFAKYNND	9	Unmodified	_GLFAKYNND_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MULTI-MSMS	A375_MHC_IP_R1	1	522.1981201171875	2	521.253631	1040.49271	-0.44137	-0.00023007	-0.037412	-1.9501E-05	-0.47878	-0.00024957	521.2535734120156	53.584	1.0129	53.584	53.301	54.314	0					50	19	4	0	0	0	0.63811	1	19246	19246		12.532	0.89125	1	43747000	+		17473	22397	12629	12723	17097	17097					-0.025917069705201357
GLFAPQFYV	9	Unmodified	_GLFAPQFYV_					0	0	0		nc|ENSG00000136603|P12757-4|SKIL;nc|ENSG00000136603|P12757-2|SKIL;nc|ENSG00000136603|P12757-3|SKIL;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL	nc|ENSG00000136603|P12757-4|SKIL	nc|ENSG00000136603|P12757-4|SKIL	MULTI-MSMS	A375_MHC_IP_R1	1	521.6734619140625	2	521.273835	1040.53312	-0.6869	-0.00035806	0.3419	0.00017822	-0.345	-0.00017984	521.2738712073937	129.47	0.2542	129.47	129.35	129.6	0					10	4	3	0	0	0	0.13491	1	49825	49825		44.407	24.968	1	20822000			17474	4800	12630	12724	17098	17098					0.014472594198878141
GLFAPQFYV	9	Unmodified	_GLFAPQFYV_					0	0	0		nc|ENSG00000136603|P12757-4|SKIL;nc|ENSG00000136603|P12757-2|SKIL;nc|ENSG00000136603|P12757-3|SKIL;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL	nc|ENSG00000136603|P12757-4|SKIL	nc|ENSG00000136603|P12757-4|SKIL	MULTI-MSMS	A375_MHC_IP_R2	2	521.6731567382812	2	521.273835	1040.53312	-0.66431	-0.00034629	-0.57324	-0.00029881	-1.2375	-0.0006451	521.27350638729	129.2	0.30301	129.44	129.31	129.62	0.23946					14	5	4	0	0	0	0.021919	1	50779	50779		81.864	49.559	1	20823000			17475	4800	12630	12724	17099	17099					0.014472594198878141
GLFAPQFYV	9	Unmodified	_GLFAPQFYV_					0	0	0		nc|ENSG00000136603|P12757-4|SKIL;nc|ENSG00000136603|P12757-2|SKIL;nc|ENSG00000136603|P12757-3|SKIL;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL	nc|ENSG00000136603|P12757-4|SKIL	nc|ENSG00000136603|P12757-4|SKIL	MULTI-MSMS	A375_MHC_IP_R2	2	1043.62158203125	1	1041.54039	1040.53312	0.0016832	1.7531E-06	-0.28918	-0.0003012	-0.2875	-0.00029944	1041.5396310904673	129.2	0.30301	129.44	129.31	129.62	0.23946					15	5	4	0	0	0	0.2264	1	50784	50784		36.044	17.909	1	36188000			17476	4800	12630	12724	17100	17100					0.014472594198878141
GLFAPVHKV	9	Unmodified	_GLFAPVHKV_					0	0	0		nc|ENSG00000130779|P30622-2|CLIP1;nc|ENSG00000130779|P30622-1|CLIP1;ENSG00000130779|ENST00000620786|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	MULTI-SECPEP	A375_MHC_IP_R1	1	484.6895751953125	2	484.28982	966.565087	-0.24804	-0.00012012	-0.068582	-3.3214E-05	-0.31663	-0.00015334	484.2897422292002	43.617	0.55857	43.617	43.351	43.909	0					25	10	3	0	0	0	0.20567	1	15170	15170		54.774	37.831	1	10692000			17477	4282	12631	12725	17101	17101					0.08046671893703206
GLFAPVHKV	9	Unmodified	_GLFAPVHKV_					0	0	0		nc|ENSG00000130779|P30622-2|CLIP1;nc|ENSG00000130779|P30622-1|CLIP1;ENSG00000130779|ENST00000620786|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	MULTI-MSMS	A375_MHC_IP_R2	2	484.68914794921875	2	484.28982	966.565087	-0.52425	-0.00025389	-0.32148	-0.00015569	-0.84573	-0.00040958	484.2896331057072	42.653	0.65894	43.425	43.167	43.826	0.7724					27	12	3	0	0	0	0.050162	1	15848	15848		64.236	34.012	1	11609000			17478	4282	12631	12725	17102	17102					0.08046671893703206
GLFATVTGGF	10	Unmodified	_GLFATVTGGF_					0	0	0			REV__BCHE|p.P387Sfs*5|1|0.16|ENSG00000114200|chr3:165829875-165829876|-/A|frameshift_variant	REV__BCHE|p.P387Sfs*5|1|0.16|ENSG00000114200|chr3:165829875-165829876|-/A|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	484.6895751953125	2	485.255643	968.496732	-0.16569	-8.0403E-05	1.9953	0.00096822	1.8296	0.00088782	485.2573336484667	43.513	0.40603	43.513	43.3	43.706	0					15	7	3	0	0	0	0.80715	1	15170	15170		11.64	0	1	1572000	+		17479	15500	12632	12726	17103	17103					0.011223825231809315
GLFDMARARW	10	Unmodified	_GLFDMARARW_					0	0	0			REV__ENST00000474562.1_1_1:115321817-115323228:-|nuORF	REV__ENST00000474562.1_1_1:115321817-115323228:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	612.2089233398438	2	611.811125	1221.6077	-0.27364	-0.00016742	-1.7987	-0.0011005	-2.0723	-0.0012679	612.3126177162279	97.949	1.3707	97.949	97.288	98.659	0					33	26	2	0	0	0	0.52461	1	35974	35974		29.082	2.8134	1	2746600	+		17480	25160	12633	12727	17104	17104					0.005756989596193307
GLFDQHFRL	9	Unmodified	_GLFDQHFRL_					0	0	0		ENSG00000010322|ENST00000345716|NISCH;ENST00000467594.1_1_3:52524105-52525540:+|nuORF;nc|ENSG00000010322|Q9Y2I1-2|NISCH	ENSG00000010322|ENST00000345716|NISCH	ENSG00000010322|ENST00000345716|NISCH	MULTI-MSMS	A375_MHC_IP_R1	1	378.6017150878906	3	378.201452	1131.58253	0.23435	8.8631E-05	0.11475	4.3398E-05	0.3491	0.00013203	378.20148093979867	90.01	0.60596	90.01	89.73	90.336	0					27	11	3	0	0	0	0.091096	1	33062	33062		40.239	28.064	1	5076500			17481	980	12634	12728	17105	17105					0.021999674287144444
GLFDQHFRL	9	Unmodified	_GLFDQHFRL_					0	0	0		ENSG00000010322|ENST00000345716|NISCH;ENST00000467594.1_1_3:52524105-52525540:+|nuORF;nc|ENSG00000010322|Q9Y2I1-2|NISCH	ENSG00000010322|ENST00000345716|NISCH	ENSG00000010322|ENST00000345716|NISCH	MULTI-SECPEP	A375_MHC_IP_R1	1	567.1979370117188	2	566.79854	1131.58253	-0.47245	-0.00026778	-0.039674	-2.2487E-05	-0.51212	-0.00029027	566.7983445653379	90.006	1.0112	90.006	89.426	90.437	0					23	19	2	0	0	0	0.27114	1	33080	33080		45.74	21.066	1	1953500			17482	980	12634	12728	17106	17106					0.021999674287144444
GLFDQHFRL	9	Unmodified	_GLFDQHFRL_					0	0	0		ENSG00000010322|ENST00000345716|NISCH;ENST00000467594.1_1_3:52524105-52525540:+|nuORF;nc|ENSG00000010322|Q9Y2I1-2|NISCH	ENSG00000010322|ENST00000345716|NISCH	ENSG00000010322|ENST00000345716|NISCH	MULTI-MSMS	A375_MHC_IP_R2	2	378.9358215332031	3	378.201452	1131.58253	0.21191	8.0144E-05	0.033382	1.2625E-05	0.24529	9.2769E-05	378.20137509521317	89.123	0.65293	89.855	89.533	90.186	0.7318					28	12	3	0	0	0	0.22528	1	33913	33913		27.223	18.779	1	4480800			17483	980	12634	12728	17107	17107					0.021999674287144444
GLFFMKQSV	9	Unmodified	_GLFFMKQSV_					0	0	0		ENST00000559345.5_1_15:79165548-79172860:+|nuORF	ENST00000559345.5_1_15:79165548-79172860:+|nuORF	ENST00000559345.5_1_15:79165548-79172860:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	529.1807250976562	2	528.78097	1055.54739	-0.46466	-0.0002457	-0.41149	-0.00021759	-0.87615	-0.00046329	528.7810330363249	89.167	0.76237	89.167	88.815	89.577	0					21	14	3	0	0	0	0.046478	1	32734	32734		82.529	18.966	1	1935000			17484	13478	12635	12729	17108	17108					0.021835885765540297
GLFFMKQSV	9	Unmodified	_GLFFMKQSV_					0	0	0		ENST00000559345.5_1_15:79165548-79172860:+|nuORF	ENST00000559345.5_1_15:79165548-79172860:+|nuORF	ENST00000559345.5_1_15:79165548-79172860:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	529.1806030273438	2	528.78097	1055.54739	-0.48256	-0.00025517	-0.60317	-0.00031895	-1.0857	-0.00057411	528.7808010107118	88.199	0.70846	88.931	88.722	89.431	0.7318					23	13	3	0	0	0	0.046478	1	33555	33555		72.968	26.047	1	2637800			17485	13478	12635	12729	17109	17109					0.021835885765540297
GLFFMKQSV	9	Oxidation (M)	_GLFFM(Oxidation (M))KQSV_		GLFFM(1)KQSV		GLFFM(60)KQSV	0	0	1		ENST00000559345.5_1_15:79165548-79172860:+|nuORF	ENST00000559345.5_1_15:79165548-79172860:+|nuORF	ENST00000559345.5_1_15:79165548-79172860:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	537.2030029296875	2	536.778428	1071.5423	-0.77034	-0.0004135	0.37281	0.00020012	-0.39753	-0.00021339	536.7783167113214	68.765	0.55772	69.5	69.221	69.779	0.73511					19	10	2	0	0	0	0.16764	1	26062	26062		60.074	35.864	1	2538200			17486	13478	12635	12730	17110	17110		463			0.009392847139224614
GLFGHCIVL	9	Carbamidomethyl (C)	_GLFGHC(Carbamidomethyl (C))IVL_	GLFGHC(1)IVL		GLFGHC(67)IVL		0	1	0		ENSG00000137207|ENST00000372422|YIPF3;ENST00000460547.6_1_6:43480300-43480648:-|nuORF	ENSG00000137207|ENST00000372422|YIPF3	ENSG00000137207|ENST00000372422|YIPF3	MULTI-MSMS	A375_MHC_IP_R1	1	508.6729736328125	2	508.273312	1014.53207	-0.38296	-0.00019465	-0.12182	-6.1916E-05	-0.50478	-0.00025656	508.27325739466994	100.56	0.96268	100.56	100.18	101.14	0					41	18	3	0	0	0	0.042019	1	36906	36906		67.413	11.365	1	18933000			17487	4869	12636	12731	17111	17111	31				0.02538721779330899
GLFGHCIVL	9	Carbamidomethyl (C)	_GLFGHC(Carbamidomethyl (C))IVL_	GLFGHC(1)IVL		GLFGHC(67)IVL		0	1	0		ENSG00000137207|ENST00000372422|YIPF3;ENST00000460547.6_1_6:43480300-43480648:-|nuORF	ENSG00000137207|ENST00000372422|YIPF3	ENSG00000137207|ENST00000372422|YIPF3	MULTI-MSMS	A375_MHC_IP_R2	2	508.6727294921875	2	508.273312	1014.53207	-0.52273	-0.00026569	-0.406	-0.00020636	-0.92873	-0.00047205	508.2731236494543	99.38	0.86635	100.14	99.858	100.72	0.75977					43	16	4	0	0	0	0.042019	1	37681	37681		67.413	17.744	1	18355000			17488	4869	12636	12731	17112	17112	31				0.02538721779330899
GLFGKELHKV	10	Unmodified	_GLFGKELHKV_					0	0	0		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;OSBPL1A|p.F849Lfs*8|1|0.23|ENSG00000141447|chr18:24166691-24166691|A/-|frameshift_variant;ENSG00000141447|ENST00000319481|OSBPL1A	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MULTI-MSMS	A375_MHC_IP_R1	1	376.9571838378906	3	376.557236	1126.64988	0.35468	0.00013356	0.081084	3.0533E-05	0.43576	0.00016409	376.5572188941195	37.686	0.51016	37.686	37.454	37.964	0					29	9	4	0	0	0	0.042457	1	12702	12702		60.943	16.552	1	28700000			17489	4265	12637	12732	17113	17113					0.09161997639625952
GLFGKELHKV	10	Unmodified	_GLFGKELHKV_					0	0	0		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;OSBPL1A|p.F849Lfs*8|1|0.23|ENSG00000141447|chr18:24166691-24166691|A/-|frameshift_variant;ENSG00000141447|ENST00000319481|OSBPL1A	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MULTI-MSMS	A375_MHC_IP_R2	2	376.95709228515625	3	376.557236	1126.64988	-0.12603	-4.7459E-05	0.14505	5.4618E-05	0.019013	7.1593E-06	376.557243419873	36.557	0.81091	37.328	37.056	37.867	0.7709					33	15	3	0	0	0	0.056042	1	13299	13299		57.204	21.592	1	20454000			17490	4265	12637	12732	17114	17114					0.09161997639625952
GLFGLPPPP	9	Unmodified	_GLFGLPPPP_					0	0	0			REV__nc|ENSG00000139734|Q9NSV4-2|DIAPH3	REV__nc|ENSG00000139734|Q9NSV4-2|DIAPH3	MULTI-MSMS	A375_MHC_IP_R2	2	448.29766845703125	2	447.757821	893.501089	-0.15045	-6.7364E-05	0.14964	6.7001E-05	-0.00080995	-3.6266E-07	447.75782710306845	47.22	0.61131	47.981	47.664	48.275	0.76128					19	11	2	0	0	0	0.22067	1	17614	17614		36.466	8.2929	1	1419300	+		17491	19178	12638	12733	17115	17115					0.05007891736750025
GLFGVLNEI	9	Unmodified	_GLFGVLNEI_					0	0	0		ENSG00000094914|ENST00000209873|AAAS;nc|ENSG00000094914|Q9NRG9-2|AAAS;ENST00000548880.1_1_12:53709415-53715282:-|nuORF;ENST00000549450.5_1_12:53709259-53715020:-|nuORF;ENST00000550286.5_1_12:53708901-53718372:-|nuORF;ENST00000547761.6_1_12:53708901-53715765:-|nuORF;ENST00000546562.5_1_12:53709415-53715311:-|nuORF	ENSG00000094914|ENST00000209873|AAAS	ENSG00000094914|ENST00000209873|AAAS	MULTI-SECPEP	A375_MHC_IP_R1	1	961.9351806640625	1	961.535309	960.528032	-0.15087	-0.00014507	0.20839	0.00020037	0.057513	5.5301E-05	961.5352562367958	131.4	0.20163	131.4	131.33	131.53	0					5	3	2	0	0	0	0.16676	1	50683	50683		58.679	3.9053	1	5392300			17492	2028	12639	12734	17116	17116					0.04618955557270965
GLFHGTELL	9	Unmodified	_GLFHGTELL_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-SECPEP	A375_MHC_IP_R1	1	494.1686096191406	2	493.768917	985.523281	-0.27575	-0.00013616	0.016106	7.9526E-06	-0.25965	-0.00012821	493.768866620121	89.162	0.55917	89.162	88.867	89.426	0					22	10	3	0	0	0	0.04649	1	32758	32758		86.121	37.775	1	2263200			17493	1236	12640	12735	17117	17117					0.029940714145254788
GLFHGTELL	9	Unmodified	_GLFHGTELL_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-MSMS	A375_MHC_IP_R2	2	494.1684875488281	2	493.768917	985.523281	-0.43165	-0.00021314	-0.31088	-0.0001535	-0.74253	-0.00036664	493.768681494999	88.136	0.55797	88.868	88.57	89.128	0.7318					18	10	2	0	0	0	0.030661	1	33535	33535		74.396	29.989	1	2925000			17494	1236	12640	12735	17118	17118					0.029940714145254788
GLFMKLLT	8	Unmodified	_GLFMKLLT_					0	0	0			REV__nc|ENSG00000213390|Q14CB8-5|ARHGAP19	REV__nc|ENSG00000213390|Q14CB8-5|ARHGAP19	MULTI-SECPEP	A375_MHC_IP_R1	1	462.1896667480469	2	461.775157	921.53576	-0.20409	-9.4245E-05	0.3381	0.00015612	0.134	6.1879E-05	461.7752833553501	98.532	0.45855	98.532	98.2	98.659	0					10	8	2	0	0	0	0.92636	1	36146	36146		11.64	6.4096	1	1089800	+		17495	22620	12641	12736	17119	17119					0.0718539155320741
GLFMKLLT	8	Unmodified	_GLFMKLLT_					0	0	0			REV__nc|ENSG00000213390|Q14CB8-5|ARHGAP19	REV__nc|ENSG00000213390|Q14CB8-5|ARHGAP19	MULTI-SECPEP	A375_MHC_IP_R2	2	462.1752014160156	2	461.775157	921.53576	-0.63676	-0.00029404	0.49314	0.00022772	-0.14362	-6.6322E-05	461.77521878859085	97.435	0.45779	98.191	97.974	98.432	0.75586					11	8	2	0	0	0	0.8211	1	37021	37021		16.942	2.104	1	1011400	+		17496	22620	12641	12736	17120	17120					0.0718539155320741
GLFPAPIHV	9	Unmodified	_GLFPAPIHV_					0	0	0		ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	476.1763916015625	2	475.776545	949.538538	-0.54132	-0.00025755	0.13408	6.3791E-05	-0.40724	-0.00019376	475.7765406591877	99.397	0.65682	99.397	99.067	99.723	0					30	12	3	0	0	0	0.4045	1	36466	36466		28.173	7.302	1	9108500			17497	192	12642	12737	17121	17121					0.06174983002358658
GLFPAPIHV	9	Unmodified	_GLFPAPIHV_					0	0	0		ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	476.17633056640625	2	475.776545	949.538538	-0.49226	-0.00023421	0.33026	0.00015713	-0.16201	-7.708E-05	475.7766082898823	98.467	0.76281	99.227	98.895	99.657	0.75977					35	14	3	0	0	0	0.27873	1	37306	37306		28.173	7.302	1	9432600			17498	192	12642	12737	17122	17122					0.06174983002358658
GLFPSVHPEV	10	Unmodified	_GLFPSVHPEV_					0	0	0		tr|U7T341|U7T341_FUSNUDUF1858domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00364PE=4SV=1	tr|U7T341|U7T341_FUSNUDUF1858domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00364PE=4SV=1	tr|U7T341|U7T341_FUSNUDUF1858domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00364PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	540.7081298828125	2	541.287474	1080.5604	-0.69795	-0.00037779	-4.1089	-0.0022241	-4.8068	-0.0026019	541.7877123230415	98.954	0.40552	99.714	99.556	99.961	0.75977					10	7	2	0	0	0	0.85226	1	37603	37603		10.074	1.3285	1	2697700			17499	29956	12643	12738	17123	17123					0.023337429602634074
GLFPTSHSV	9	Unmodified	_GLFPTSHSV_					0	0	0		ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENST00000491786.5_1_2:47205894-47301059:+|nuORF	ENSG00000068724|ENST00000319190|TTC7A	ENSG00000068724|ENST00000319190|TTC7A	MULTI-SECPEP	A375_MHC_IP_R1	1	473.1453552246094	2	472.745442	943.476331	-0.34459	-0.00016291	0.48539	0.00022947	0.1408	6.6562E-05	472.7456490314555	56.763	0.61111	56.763	56.447	57.059	0					21	11	2	0	0	0	0.10969	1	20373	20373		48.346	31.404	1	2529100			17500	1463	12644	12739	17124	17124					0.00233211863383076
GLFPTSHSV	9	Unmodified	_GLFPTSHSV_					0	0	0		ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENST00000491786.5_1_2:47205894-47301059:+|nuORF	ENSG00000068724|ENST00000319190|TTC7A	ENSG00000068724|ENST00000319190|TTC7A	MULTI-SECPEP	A375_MHC_IP_R2	2	473.1452331542969	2	472.745442	943.476331	-0.70754	-0.00033449	0.056006	2.6477E-05	-0.65153	-0.00030801	472.7454347162013	55.866	0.51054	56.616	56.337	56.847	0.75015					17	9	2	0	0	0	0.061132	1	21141	21141		57.471	32.072	1	1760400			17501	1463	12644	12739	17125	17125					0.00233211863383076
GLFRKSEV	8	Unmodified	_GLFRKSEV_					0	0	0		DLC1|p.G1117E|1|0.46|ENSG00000164741|chr8:13094935-13094935|C/T|missense_variant	DLC1|p.G1117E|1|0.46|ENSG00000164741|chr8:13094935-13094935|C/T|missense_variant	DLC1|p.G1117E|1|0.46|ENSG00000164741|chr8:13094935-13094935|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	468.1259765625	2	468.269084	934.523616	-0.54468	-0.00025506	0.12954	6.0659E-05	-0.41515	-0.0001944	468.2691540758756	39.707	0.5064	39.707	39.441	39.948	0					15	9	2	0	0	0	0.96296	1	13575	13575		10.183	0	1	1185400			17502	749	12645	12740	17126	17126					0.05373491134378128
GLFSLSQAQY	10	Unmodified	_GLFSLSQAQY_					0	0	0		FMOD|p.A10T|1|0.2|ENSG00000122176|chr1:203348243-203348243|C/T|missense_variant;ENSG00000122176|ENST00000354955|FMOD	FMOD|p.A10T|1|0.2|ENSG00000122176|chr1:203348243-203348243|C/T|missense_variant	FMOD|p.A10T|1|0.2|ENSG00000122176|chr1:203348243-203348243|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	558.17578125	2	557.282389	1112.55022	-0.71162	-0.00039657	-2.0124	-0.0011215	-2.7241	-0.0015181	557.2823736766712	63.084	1.1666	63.826	63.484	64.651	0.74263					59	22	4	0	0	0	0.62155	1	24116	24116		19.257	2.3147	1	12828000			17503	3764	12646	12741	17127	17127					-0.001548647649542545
GLFSNDIPHV	10	Unmodified	_GLFSNDIPHV_					0	0	0		ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENST00000515784.1_1_5:110428046-110430680:+|nuORF	ENSG00000134987|ENST00000513710|WDR36	ENSG00000134987|ENST00000513710|WDR36	MULTI-SECPEP	A375_MHC_IP_R1	1	550.18359375	2	549.782556	1097.55056	-0.48808	-0.00026834	1.1616	0.00063864	0.67355	0.00037031	549.7829644362672	91.897	0.35352	91.897	91.706	92.059	0					10	6	2	0	0	0	0.6774	1	33791	33791		34.402	18.555	1	967460			17504	4633	12647	12742	17128	17128					0.005685549548843483
GLFSNDIPHV	10	Unmodified	_GLFSNDIPHV_					0	0	0		ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENST00000515784.1_1_5:110428046-110430680:+|nuORF	ENSG00000134987|ENST00000513710|WDR36	ENSG00000134987|ENST00000513710|WDR36	MULTI-SECPEP	A375_MHC_IP_R2	2	550.1827392578125	2	549.782556	1097.55056	-0.68543	-0.00037684	1.0228	0.0005623	0.33735	0.00018547	549.7829038412227	91.095	0.45488	91.83	91.616	92.071	0.7345					12	8	2	0	0	0	0.77204	1	34691	34691		27.629	2.2295	1	1769400			17505	4633	12647	12742	17129	17129					0.005685549548843483
GLFSRKVI	8	Unmodified	_GLFSRKVI_					0	0	0		ENST00000485405.5_1_1:162760500-162767724:+|nuORF;nc|ENSG00000132196|P56937-3|HSD17B7;ENSG00000132196|ENST00000254521|HSD17B7;ENST00000494540.5_1_10:38645382-38658918:+|nuORF	ENST00000485405.5_1_1:162760500-162767724:+|nuORF	ENST00000485405.5_1_1:162760500-162767724:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	460.6899719238281	2	460.28982	918.565087	-0.064404	-2.9645E-05	0.1756	8.0825E-05	0.11119	5.118E-05	460.28982973130314	43.261	0.35713	43.261	43.043	43.4	0					11	6	2	0	0	0	0.86263	1	15052	15052		14.838	0	1	1955400			17506	4380	12648	12743	17130	17130					0.10254671893699197
GLFSSVGSW	9	Unmodified	_GLFSSVGSW_					0	0	0			REV__ENST00000550106.5_1_12:95611896-95612004:+|nuORF	REV__ENST00000550106.5_1_12:95611896-95612004:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	470.6318054199219	2	470.232168	938.449782	-0.2538	-0.00011935	-0.10461	-4.9192E-05	-0.35842	-0.00016854	470.2321460830485	62.479	0.56427	62.479	62.198	62.762	0					24	10	3	0	0	0	0.11296	1	22552	22552		48.346	2.6462	1	5063700	+		17507	26032	12649	12744	17131	17131					-0.02190477027943416
GLFSSVGSW	9	Unmodified	_GLFSSVGSW_					0	0	0			REV__ENST00000550106.5_1_12:95611896-95612004:+|nuORF	REV__ENST00000550106.5_1_12:95611896-95612004:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	470.6318054199219	2	470.232168	938.449782	-0.2538	-0.00011935	-0.10461	-4.9192E-05	-0.35842	-0.00016854	470.2321460830485	62.479	0.56427	62.479	62.198	62.762	0					24	10	3	0	0	0	0.061132	1	22552	22552		48.346	15.56	1	5063700	+		17508	26032	12649	12744	17132	17132					-0.02190477027943416
GLFSVFKP	8	Unmodified	_GLFSVFKP_					0	0	0			REV__ENSG00000182481|ENST00000330459|KPNA2	REV__ENSG00000182481|ENST00000330459|KPNA2	MULTI-SECPEP	A375_MHC_IP_R2	2	447.1477966308594	2	447.757821	893.501089	-0.15045	-6.7364E-05	0.14964	6.7001E-05	-0.00080995	-3.6266E-07	447.75782710306845	47.22	0.61131	47.981	47.664	48.275	0.76128					19	11	2	0	0	0	0.97144	1	17615	17615		14.582	0	1	1419300	+		17509	21693	12650	12745	17133	17133					0.05007891736761394
GLFTRLRPD	9	Unmodified	_GLFTRLRPD_					0	0	0			REV__ENST00000553191.1_2_12:56705145-56708722:-|nuORF	REV__ENST00000553191.1_2_12:56705145-56708722:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	358.6170654296875	3	358.873336	1073.59818	0.063028	2.2619E-05	-1.2593	-0.00045192	-1.1963	-0.00042931	359.2073143882627	24.928	0.20172	24.928	24.801	25.002	0					6	3	2	0	0	0	0.65527	1	7158	7158		12.175	2.7916	1	4407100	+		17510	26061	12651	12746	17134	17134					0.0643225394574074
GLFTRLRPD	9	Unmodified	_GLFTRLRPD_					0	0	0			REV__ENST00000553191.1_2_12:56705145-56708722:-|nuORF	REV__ENST00000553191.1_2_12:56705145-56708722:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	358.873336	1073.59818	-0.50056	-0.00017964	-2.3872	-0.00085669	-2.8877	-0.0010363	358.87275940860104	24.288	0.15256	24.932	24.857	25.009	0.64368	0.0021057	-0.00096761	NaN	8.4443	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2331000	+		17511	26061	12651	12746							0.0643225394574074
GLFTVLYTV	9	Unmodified	_GLFTVLYTV_					0	0	0		ENSG00000177283|ENST00000374694|FZD8;FZD8|p.A544V|1|0.5|ENSG00000177283|chr10:35639799-35639799|G/A|missense_variant	ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	MULTI-SECPEP	A375_MHC_IP_R1	1	507.18927001953125	2	506.789318	1011.56408	-0.62773	-0.00031812	0.2525	0.00012796	-0.37523	-0.00019016	506.7893314066634	132.33	0.25204	132.33	132.18	132.44	0					9	4	3	0	0	0	0.12259	1	51038	51038		63.563	19.156	1	4832800			17512	8072	12652	12747	17135	17135					0.05876412734130554
GLFTVLYTV	9	Unmodified	_GLFTVLYTV_					0	0	0		ENSG00000177283|ENST00000374694|FZD8;FZD8|p.A544V|1|0.5|ENSG00000177283|chr10:35639799-35639799|G/A|missense_variant	ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	MULTI-MSMS	A375_MHC_IP_R2	2	507.1888732910156	2	506.789318	1011.56408	-0.70121	-0.00035537	-0.043684	-2.2139E-05	-0.7449	-0.00037751	506.789338715529	132.09	0.40294	132.28	132	132.4	0.18953					9	7	2	0	0	0	0.13491	1	51991	51991		44.407	8.3628	1	5082000			17513	8072	12652	12747	17136	17136					0.05876412734130554
GLFYLENR	8	Unmodified	_GLFYLENR_					0	0	0		ENST00000276416.10_1_8:22478638-22478791:-|nuORF	ENST00000276416.10_1_8:22478638-22478791:-|nuORF	ENST00000276416.10_1_8:22478638-22478791:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	506.6664733886719	2	506.266542	1010.51853	-0.57924	-0.00029325	-0.12085	-6.1184E-05	-0.70009	-0.00035443	506.2664719750654	85.726	0.45839	85.726	85.412	85.87	0					14	8	2	0	0	0	0.93416	1	31441	31441		20.871	6.2895	1	1252700			17514	10406	12653	12748	17137	17137					0.013691872717458864
GLFYLENR	8	Unmodified	_GLFYLENR_					0	0	0		ENST00000276416.10_1_8:22478638-22478791:-|nuORF	ENST00000276416.10_1_8:22478638-22478791:-|nuORF	ENST00000276416.10_1_8:22478638-22478791:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	507.0041809082031	2	506.266542	1010.51853	-0.61008	-0.00030887	-0.14441	-7.3112E-05	-0.7545	-0.00038198	506.2664374593673	84.711	0.66127	85.447	85.272	85.933	0.73601					19	12	2	0	0	0	0.93416	1	32162	32162		14.582	0	1	1566900			17515	10406	12653	12748	17138	17138					0.013691872717458864
GLGAAAAALL	10	Unmodified	_GLGAAAAALL_					0	0	0		ENSG00000010017|ENST00000011619|RANBP9	ENSG00000010017|ENST00000011619|RANBP9	ENSG00000010017|ENST00000011619|RANBP9	MULTI-SECPEP	A375_MHC_IP_R2	2	414.6009826660156	2	414.252903	826.491253	-0.038457	-1.5931E-05	-0.17196	-7.1235E-05	-0.21042	-8.7165E-05	414.2526598862923	27.86	0.2542	28.539	28.452	28.706	0.67857					6	4	2	0	0	0	0.8716	1	9628	9628		7.9102	0	1	1038000			17516	972	12654	12749	17139	17139					0.07106703731358266
GLGAVGGVRLL	11	Unmodified	_GLGAVGGVRLL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-SECPEP	A375_MHC_IP_R1	1	506.18511962890625	2	506.319109	1010.62366	0.20169	0.00010212	0.10511	5.3218E-05	0.3068	0.00015534	506.3190115657982	44.844	0.60837	44.844	44.575	45.183	0					18	11	2	0	0	0	0.95991	1	15638	15638		18.146	1.2041	1	2591100			17517	9935	12655	12750	17140	17140					0.11877728468175519
GLGAVGGVRLL	11	Unmodified	_GLGAVGGVRLL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-SECPEP	A375_MHC_IP_R2	2	507.01007080078125	2	506.319109	1010.62366	-0.53668	-0.00027173	-0.31517	-0.00015958	-0.85186	-0.00043131	506.31862721857266	43.735	0.65537	44.504	44.228	44.883	0.7691					16	12	2	0	0	0	0.50148	1	16288	16288		37.974	7.7492	1	1115800			17518	9935	12655	12750	17141	17141					0.11877728468175519
GLGCKRHDPF	10	Unmodified	_GLGCKRHDPF_					0	0	0			REV__THSD7B|p.G557R|2|0.35|ENSG00000144229|chr2:137170884-137170884|G/A|missense_variant	REV__THSD7B|p.G557R|2|0.35|ENSG00000144229|chr2:137170884-137170884|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	564.6582641601562	2	565.2822	1128.54985	-0.45555	-0.00025751	-2.5991	-0.0014692	-3.0546	-0.0017267	565.7826133969778	58.235	0.81223	58.235	58.126	58.938	0					18	15	2	0	0	0	0.61429	1	21178	21178		13.042	0	1	1267100	+		17519	28107	12656	12751	17142	17142					-0.00928562965805213
GLGDWAAGLRV	11	Unmodified	_GLGDWAAGLRV_					0	0	0		ENST00000414282.5_1_9:139621519-139622634:-|nuORF	ENST00000414282.5_1_9:139621519-139622634:-|nuORF	ENST00000414282.5_1_9:139621519-139622634:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	558.2040405273438	2	557.803823	1113.59309	-0.29958	-0.00016711	-0.033763	-1.8833E-05	-0.33335	-0.00018594	557.8037490435208	107.21	0.66402	107.21	106.83	107.49	0					21	12	3	0	0	0	0.06323	1	39322	39322		80.676	44.17	1	2406800			17520	11665	12657	12752	17143	17143					0.04083950083122545
GLGDWAAGLRV	11	Unmodified	_GLGDWAAGLRV_					0	0	0		ENST00000414282.5_1_9:139621519-139622634:-|nuORF	ENST00000414282.5_1_9:139621519-139622634:-|nuORF	ENST00000414282.5_1_9:139621519-139622634:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	558.2037353515625	2	557.803823	1113.59309	-0.77911	-0.00043459	0.4039	0.0002253	-0.37521	-0.00020929	557.803979787753	106.35	0.81442	107.11	106.63	107.44	0.75977					21	15	2	0	0	0	0.10628	1	40196	40196		74.2	42.931	1	2147600			17521	11665	12657	12752	17144	17144					0.04083950083122545
GLGEDIIHQL	10	Unmodified	_GLGEDIIHQL_					0	0	0		ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	547.2626953125	2	547.795663	1093.57677	-0.59581	-0.00032638	0.1902	0.00010419	-0.40561	-0.00022219	547.7954736260255	95.566	0.70631	95.566	95.312	96.018	0					23	13	2	0	0	0	0.42334	1	35125	35125		43.772	17.504	1	1030200			17522	3304	12658	12753	17145	17145					0.03372824126381602
GLGEDIIHQL	10	Unmodified	_GLGEDIIHQL_					0	0	0		ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	548.1953125	2	547.795663	1093.57677	-0.53591	-0.00029357	0.31022	0.00016994	-0.22569	-0.00012363	547.7954929017388	94.723	0.50443	95.467	95.173	95.678	0.74474					15	9	2	0	0	0	0.47255	1	36038	36038		29.841	7.1043	1	1479200			17523	3304	12658	12753	17146	17146					0.03372824126381602
GLGERKGQQWH	11	Unmodified	_GLGERKGQQWH_					0	0	0			REV__ENST00000553505.1_1_14:24044793-24046767:-|nuORF	REV__ENST00000553505.1_1_14:24044793-24046767:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	648.7330322265625	2	648.33381	1294.65307	-0.86121	-0.00055835	-0.98044	-0.00063565	-1.8417	-0.001194	648.3330167774245	65.653	0.71245	66.391	66.018	66.731	0.73812					24	13	3	0	0	0	0.60747	1	24884	24884		22.736	1.1993	1	4790000	+		17524	16960	12659	12754	17147	17147					0.017526407463719806
GLGFFFTFW	9	Unmodified	_GLGFFFTFW_					0	0	0		ENST00000395811.9_1_17:17089000-17089168:+|nuORF	ENST00000395811.9_1_17:17089000-17089168:+|nuORF	ENST00000395811.9_1_17:17089000-17089168:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	561.6732788085938	2	561.276378	1120.5382	-0.53995	-0.00030306	-2.6467	-0.0014856	-3.1867	-0.0017886	561.2744530514857	94.142	0.40339	94.142	93.991	94.394	0					17	7	3	0	0	0	0.1478	1	34639	34639		42.095	6.0504	1	2377100			17525	11477	12660	12755	17148	17148					-0.017244367174953368
GLGFFFTFW	9	Unmodified	_GLGFFFTFW_					0	0	0		ENST00000395811.9_1_17:17089000-17089168:+|nuORF	ENST00000395811.9_1_17:17089000-17089168:+|nuORF	ENST00000395811.9_1_17:17089000-17089168:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	561.276378	1120.5382	-0.48963	-0.00027482	-2.7698	-0.0015546	-3.2594	-0.0018294	561.2745481781202	93.392	0.40752	94.131	93.899	94.306	0.73922	-0.0058231	-3.5474E-05	NaN	42.095	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1688700			17526	11477	12660	12755							-0.017244367174953368
GLGFGTCFNSH	11	Unmodified	_GLGFGTCFNSH_					0	0	0			REV__ENST00000481464.5_1_1:19927449-19952892:+|nuORF	REV__ENST00000481464.5_1_1:19927449-19952892:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	569.6732788085938	2	570.250566	1138.48658	-0.079801	-4.5506E-05	-1.8302	-0.0010437	-1.91	-0.0010892	570.2494445497641	100.02	0.55918	100.78	100.52	101.08	0.76278					15	10	2	0	0	0	0.94285	1	37866	37866		9.3831	2.0939	1	1787600	+		17527	25260	12661	12756	17149	17149					-0.07712548473682546
GLGFLPHTV	9	Unmodified	_GLGFLPHTV_					0	0	0			REV__ENST00000556973.1_1_14:102198142-102198797:+|nuORF	REV__ENST00000556973.1_1_14:102198142-102198797:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	470.6662902832031	2	470.766178	939.517802	0.17246	8.1186E-05	3.5845	0.0016875	3.757	0.0017687	470.7673901227406	44.932	0.30455	44.932	44.827	45.132	0					8	5	2	0	0	0	0.32899	1	15761	15761		28.487	3.813	1	474670	+		17528	26115	12662	12757	17150	17150					0.04562392622699463
GLGFLPHTV	9	Unmodified	_GLGFLPHTV_					0	0	0			REV__ENST00000556973.1_1_14:102198142-102198797:+|nuORF	REV__ENST00000556973.1_1_14:102198142-102198797:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	470.62432861328125	2	470.766178	939.517802	-0.082307	-3.8747E-05	1.6523	0.00077785	1.57	0.00073911	470.7679534848245	45.409	0.65662	45.409	45.132	45.789	0					21	12	2	0	0	0	0.55359	1	15874	15874		10.824	0	1	7565700	+		17529	26115	12662	12757	17151	17151					0.04562392622699463
GLGFSVVALR	10	Unmodified	_GLGFSVVALR_					0	0	0		ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ;nc|ENSG00000132849|Q8NI35|PATJ	ENSG00000132849|ENST00000642238|PATJ	ENSG00000132849|ENST00000642238|PATJ	MSMS	A375_MHC_IP_R2	2	510.2037658691406	2	509.805834	1017.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.55	1	121.08	120.58	121.58	0.53168								0	0	0	0.15089	1	46016	46016		16.149	0.30192	1				17530	4458	12663	12758	17152	17152					0.08902039576832976
GLGGVTGV	8	Unmodified	_GLGGVTGV_					0	0	0		nc|ENSG00000007516|O94812-7|BAIAP3;nc|ENSG00000007516|O94812-5|BAIAP3;nc|ENSG00000007516|O94812-3|BAIAP3;ENSG00000007516|ENST00000426824|BAIAP3;nc|ENSG00000007516|O94812-2|BAIAP3;nc|ENSG00000007516|O94812|BAIAP3	nc|ENSG00000007516|O94812-7|BAIAP3	nc|ENSG00000007516|O94812-7|BAIAP3	MULTI-SECPEP	A375_MHC_IP_R2	2	659.6634521484375	1	659.372266	658.36499	-1.0794	-0.00071171	0.60123	0.00039643	-0.47816	-0.00031528	659.3723857361406	54.762	0.35786	55.513	55.32	55.678	0.75075					9	6	2	0	0	0	0.44468	1	20663	20663		44.407	19.733	1	1179300			17531	943	12664	12759	17153	17153					0.02214197226089709
GLGKKARHLLY	11	Unmodified	_GLGKKARHLLY_					0	0	0			REV__ENSG00000171303|ENST00000302909|KCNK3	REV__ENSG00000171303|ENST00000302909|KCNK3	MULTI-SECPEP	A375_MHC_IP_R1	1	627.6972045898438	2	628.385314	1254.75608	-0.56559	-0.00035541	0.54703	0.00034374	-0.018566	-1.1667E-05	628.3856284734425	68.743	0.55562	68.743	68.514	69.07	0					23	10	4	0	0	0	0.99881	1	24861	24861		1.4819	0.28856	1	9005400	+		17532	21056	12665	12760	17154	17154					0.13888753204969362
GLGKYLGLV	9	Unmodified	_GLGKYLGLV_					0	0	0			REV__ENSG00000197119|ENST00000359232|SLC25A29	REV__ENSG00000197119|ENST00000359232|SLC25A29	MULTI-MSMS	A375_MHC_IP_R1	1	460.9058532714844	2	460.284203	918.553853	-0.53825	-0.00024775	0.36235	0.00016679	-0.1759	-8.0963E-05	460.2843496404936	67.219	0.56168	67.219	66.938	67.5	0					23	10	3	0	0	0	0.4867	1	24432	24432		20.454	5.6154	1	6558300	+		17533	22255	12666	12761	17155	17155					0.09131849799564407
GLGLPCTWGGP	11	Unmodified	_GLGLPCTWGGP_					0	0	0			REV__ENST00000277540.6_1_9:140470535-140471924:-|nuORF	REV__ENST00000277540.6_1_9:140470535-140471924:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	529.659912109375	2	529.260402	1056.50625	-0.38846	-0.00020559	0.67812	0.0003589	0.28966	0.00015331	529.2606805800398	85.868	0.86346	86.602	86.186	87.05	0.73392					36	16	3	0	0	0	0.5062	1	32580	32580		30.637	3.7529	1	12306000	+		17534	23305	12667	12762	17156	17156					-0.019741724629511737
GLGLPLPSSQG	11	Unmodified	_GLGLPLPSSQG_					0	0	0		ENST00000331483.8_1_17:79801161-79801359:-|nuORF	ENST00000331483.8_1_17:79801161-79801359:-|nuORF	ENST00000331483.8_1_17:79801161-79801359:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	513.6843872070312	2	513.284931	1024.55531	-0.20972	-0.00010764	-0.096143	-4.9349E-05	-0.30586	-0.00015699	513.2848666259879	70.008	1.6301	70.008	69.529	71.159	0					98	31	5	0	0	0	0.45155	1	25568	25568		34.932	0.53034	1	83317000			17535	10771	12668	12763	17157	17157					0.044014390976599316
GLGLQGLAV	9	Unmodified	_GLGLQGLAV_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-SECPEP	A375_MHC_IP_R2	2	828.2666015625	1	827.498529	826.491253	-0.74982	-0.00062048	0.24697	0.00020436	-0.50286	-0.00041611	827.4988706511418	78.298	0.60902	79.04	78.776	79.385	0.74293					19	11	2	0	0	0	0.20094	1	29702	29702		44.407	0	1	5159300			17536	8944	12669	12764	17158	17158					0.07106703731381003
GLGLQGLAV	9	Unmodified	_GLGLQGLAV_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-MATCH	A375_MHC_IP_R1	1		1	827.498529	826.491253	-0.24548	-0.00020313	0.091847	7.6003E-05	-0.15363	-0.00012713	827.4984804680998	79.131	0.61298	79.131	78.909	79.522	0	0.045463	-2.6993E-05	NaN	44.407	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6667500			17537	8944	12669	12764							0.07106703731381003
GLGNLTKPN	9	Unmodified	_GLGNLTKPN_					0	0	0		ENSG00000121281|ENST00000673801|ADCY7	ENSG00000121281|ENST00000673801|ADCY7	ENSG00000121281|ENST00000673801|ADCY7	MULTI-SECPEP	A375_MHC_IP_R2	2	456.6923522949219	2	457.258717	912.50288	-0.41028	-0.0001876	-0.11988	-5.4815E-05	-0.53015	-0.00024242	457.25867550697245	36.053	0.51095	36.817	36.537	37.048	0.76338					14	9	2	0	0	0	0.71541	1	13176	13176		7.2892	0	1	3966200			17538	3715	12670	12765	17159	17159					0.043129007547122455
GLGPACEE	8	Unmodified	_GLGPACEE_					0	0	0		ENST00000418273.2_1_10:88730501-88730537:-|nuORF	ENST00000418273.2_1_10:88730501-88730537:-|nuORF	ENST00000418273.2_1_10:88730501-88730537:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	774.9085083007812	1	775.329081	774.321804	-0.93008	-0.00072112	3.1268	0.0024243	2.1967	0.0017032	775.3312410837351	124.19	0.15324	124.52	124.39	124.55	0.32969					4	2	2	0	0	0	0.972	1	47912	47912		11.114	0.93107	1	33533000			17539	11704	12671	12766	17160	17160					-0.07438360613502937
GLGPKFGRCL	10	Unmodified	_GLGPKFGRCL_					0	0	0		ENSG00000110324|ENST00000227752|IL10RA;ENST00000530761.5_1_11:117857521-117870353:+|nuORF	ENSG00000110324|ENST00000227752|IL10RA	ENSG00000110324|ENST00000227752|IL10RA	MULTI-SECPEP	A375_MHC_IP_R1	1	524.7078247070312	2	524.292037	1046.56952	-0.44045	-0.00023092	0.34834	0.00018263	-0.092111	-4.8293E-05	524.2923959059807	98.243	0.50702	98.243	97.948	98.455	0					15	9	2	0	0	0	0.72086	1	36127	36127		24.021	0	1	3108800			17540	2930	12672	12767	17161	17161					0.048098130449716336
GLGPNLVGV	9	Unmodified	_GLGPNLVGV_					0	0	0		nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36;SLC25A33|p.P103L|1|0.32|ENSG00000171612|chr1:9567355-9567355|C/T|missense_variant;nc|ENSG00000114120|Q96CQ1-2|SLC25A36;ENSG00000171612|ENST00000302692|SLC25A33	nc|ENSG00000114120|Q96CQ1-3|SLC25A36	nc|ENSG00000114120|Q96CQ1-3|SLC25A36	MULTI-SECPEP	A375_MHC_IP_R2	2	413.637939453125	2	413.245078	824.475603	0.15359	6.347E-05	0.035243	1.4564E-05	0.18883	7.8034E-05	413.24502700470487	93.642	0.45656	94.387	94.109	94.566	0.74474					15	8	2	0	0	0	0.15439	1	35638	35638		38.151	3.9638	1	2154200			17541	3199	12673	12768	17162	17162					0.05634417214332643
GLGPNLVGV	9	Unmodified	_GLGPNLVGV_					0	0	0		nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36;SLC25A33|p.P103L|1|0.32|ENSG00000171612|chr1:9567355-9567355|C/T|missense_variant;nc|ENSG00000114120|Q96CQ1-2|SLC25A36;ENSG00000171612|ENST00000302692|SLC25A33	nc|ENSG00000114120|Q96CQ1-3|SLC25A36	nc|ENSG00000114120|Q96CQ1-3|SLC25A36	MULTI-MATCH	A375_MHC_IP_R1	1		2	413.245078	824.475603	0.13243	5.4728E-05	0.38213	0.00015791	0.51456	0.00021264	413.2451127453931	94.466	0.40873	94.466	94.191	94.599	0	0.039593	0.00014894	NaN	38.151	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1332100			17542	3199	12673	12768							0.05634417214332643
GLGPPGRSV	9	Unmodified	_GLGPPGRSV_					0	0	0		SPTY2D1|p.I548Afs*5|1|0.33|ENSG00000179119|chr11:18614620-18614632|TGGACCGGCTAAT/-|frameshift_variant;ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	SPTY2D1|p.I548Afs*5|1|0.33|ENSG00000179119|chr11:18614620-18614632|TGGACCGGCTAAT/-|frameshift_variant	SPTY2D1|p.I548Afs*5|1|0.33|ENSG00000179119|chr11:18614620-18614632|TGGACCGGCTAAT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	420.1245422363281	2	420.240327	838.466101	-0.25378	-0.00010665	0.085978	3.6131E-05	-0.1678	-7.0517E-05	420.2403302709821	30.192	2.5348	30.192	29.899	32.434	0					99	49	4	0	0	0	0.033557	3	9703	9703;9752;9830		71.922	7.7779	1	368920000			17543	8206	12674	12769	17163;17164;17165	17163					0.040406489287988734
GLGPPGRSV	9	Unmodified	_GLGPPGRSV_					0	0	0		SPTY2D1|p.I548Afs*5|1|0.33|ENSG00000179119|chr11:18614620-18614632|TGGACCGGCTAAT/-|frameshift_variant;ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	SPTY2D1|p.I548Afs*5|1|0.33|ENSG00000179119|chr11:18614620-18614632|TGGACCGGCTAAT/-|frameshift_variant	SPTY2D1|p.I548Afs*5|1|0.33|ENSG00000179119|chr11:18614620-18614632|TGGACCGGCTAAT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	420.6399230957031	2	420.240327	838.466101	-0.75321	-0.00031653	0.39475	0.00016589	-0.35846	-0.00015064	420.2404718056029	29.512	2.3813	30.211	29.83	32.211	0.69872					104	46	5	0	0	0	0.0094639	3	10229	10229;10368;10483		106.94	21.668	1	337650000			17544	8206	12674	12769	17166;17167;17168	17166					0.040406489287988734
GLGPQAVGGR	10	Unmodified	_GLGPQAVGGR_					0	0	0		nc|ENSG00000261359|I3L0S3|PYCARD-AS1	nc|ENSG00000261359|I3L0S3|PYCARD-AS1	nc|ENSG00000261359|I3L0S3|PYCARD-AS1	MSMS	A375_MHC_IP_R2	2	456.1714782714844	2	456.256508	910.498464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.313	1	99.073	98.573	99.573	0.75977								0	0	0	0.119	1	37300	37300		39.957	9.7325	1				17545	14929	12675	12770	17169	17169					0.03963436331810044
GLGPTFKL	8	Unmodified	_GLGPTFKL_					0	0	0		ENST00000529955.5_1_11:66281964-66299243:+|nuORF;ENSG00000174483|ENST00000318312|BBS1;nc|ENSG00000174483|Q8NFJ9-2|BBS1;nc|ENSG00000174483|Q8NFJ9-3|BBS1	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	417.1496887207031	2	416.749996	831.485439	-0.073319	-3.0556E-05	-0.21633	-9.0154E-05	-0.28964	-0.00012071	416.7498375699929	75.212	0.81306	75.949	75.671	76.484	0.73752					36	15	4	0	0	0	0.022188	1	28518	28518		115.69	3.0988	1	15817000			17546	7886	12676	12771	17170	17170					0.06295605219713707
GLGPTFKL	8	Unmodified	_GLGPTFKL_					0	0	0		ENST00000529955.5_1_11:66281964-66299243:+|nuORF;ENSG00000174483|ENST00000318312|BBS1;nc|ENSG00000174483|Q8NFJ9-2|BBS1;nc|ENSG00000174483|Q8NFJ9-3|BBS1	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	416.749996	831.485439	0.18676	7.7831E-05	0.02342	9.7604E-06	0.21018	8.7592E-05	416.7499575255633	76.161	0.8073	76.161	75.865	76.673	0	0.10575	0.00010827	NaN	115.69	37	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16350000			17547	7886	12676	12771							0.06295605219713707
GLGPTPLLSL	10	Unmodified	_GLGPTPLLSL_					0	0	0			REV__ENSG00000073670|ENST00000200557|ADAM11	REV__ENSG00000073670|ENST00000200557|ADAM11	MULTI-SECPEP	A375_MHC_IP_R1	1	483.6597900390625	2	484.294768	966.574983	-0.17184	-8.322E-05	-1.6017	-0.00077567	-1.7735	-0.00085889	484.29463863966424	79.17	0.50877	79.17	78.909	79.418	0					21	9	3	0	0	0	0.83086	1	28850	28850		3.5965	0	1	1066900	+		17548	16621	12677	12772	17171	17171					0.09035815108438783
GLGRVWAV	8	Unmodified	_GLGRVWAV_					0	0	0		ENST00000488743.6_1_2:27425876-27434347:-|nuORF;ENSG00000138074|ENST00000310574|SLC5A6;ENST00000464538.1_1_2:27428216-27429031:-|nuORF	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	429.6532287597656	2	429.253237	856.491922	0.26119	0.00011212	-0.3642	-0.00015634	-0.10301	-4.4219E-05	429.25306855892813	69.763	0.55617	69.763	69.529	70.085	0					21	10	3	0	0	0	0.68907	1	25341	25341		38.151	6.0342	1	2714200			17549	12622	12678	12773	17172	17172					0.05793543171080273
GLGRVWAV	8	Unmodified	_GLGRVWAV_					0	0	0		ENST00000488743.6_1_2:27425876-27434347:-|nuORF;ENSG00000138074|ENST00000310574|SLC5A6;ENST00000464538.1_1_2:27428216-27429031:-|nuORF	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	429.653076171875	2	429.253237	856.491922	-0.10272	-4.4093E-05	-0.35442	-0.00015214	-0.45714	-0.00019623	429.2531011866631	68.797	0.7093	69.532	69.018	69.728	0.73511					26	13	3	0	0	0	0.71451	1	26065	26065		30.225	5.5509	1	2580000			17550	12622	12678	12773	17173	17173					0.05793543171080273
GLGSITSV	8	Unmodified	_GLGSITSV_					0	0	0		ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	MULTI-SECPEP	A375_MHC_IP_R1	1	733.808837890625	1	733.409046	732.401769	-0.68586	-0.00050302	0.47439	0.00034793	-0.21147	-0.00015509	733.4092828947298	68.491	0.81026	68.491	68.209	69.02	0					32	15	3	0	0	0	0.17547	1	24802	24802		85.357	0	1	13104000			17551	3321	12679	12774	17174	17174					0.0248644905201445
GLGSITSV	8	Unmodified	_GLGSITSV_					0	0	0		ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	MULTI-MATCH	A375_MHC_IP_R2	2		1	733.409046	732.401769	-0.77202	-0.00056621	0.39619	0.00029057	-0.37583	-0.00027564	733.4091997402919	67.699	0.66221	68.435	68.104	68.766	0.73631	-0.028196	-2.7864E-05	NaN	85.357	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14714000			17552	3321	12679	12774							0.0248644905201445
GLGSLLDE	8	Unmodified	_GLGSLLDE_					0	0	0			REV__ENSG00000151320|ENST00000280979|AKAP6	REV__ENSG00000151320|ENST00000280979|AKAP6	MULTI-SECPEP	A375_MHC_IP_R1	1	802.8045654296875	1	803.414525	802.407249	-0.22094	-0.0001775	4.0909	0.0032867	3.87	0.0031092	803.4203886459264	128.13	0.25262	128.13	127.92	128.18	0					6	4	2	0	0	0	0.88799	1	49154	49154		20.871	0	1	3292600	+		17553	19747	12680	12775	17175	17175					-0.0018587215620300412
GLGSNSDG	8	Unmodified	_GLGSNSDG_					0	0	0			REV__nc|ENSG00000138796|Q16836-3|HADH	REV__nc|ENSG00000138796|Q16836-3|HADH	MULTI-MSMS	A375_MHC_IP_R1	1	707.3181762695312	1	706.300224	705.292947	-0.93818	-0.00066264	4.4091	0.0031142	3.4709	0.0024515	706.3045862311028	124.47	0.40652	124.47	124.29	124.7	0					10	7	2	0	0	0	0.7758	1	46907	46907		10.183	1.5901	1	21732000	+		17554	27256	12681	12776	17176	17176					-0.07148761918278979
GLGTGLHTFLL	11	Unmodified	_GLGTGLHTFLL_					0	0	0		ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	MULTI-SECPEP	A375_MHC_IP_R2	2	564.3778076171875	2	564.824224	1127.63389	-0.31162	-0.00017601	-0.5283	-0.00029839	-0.83991	-0.0004744	564.8241734419328	110.49	0.30703	111.23	110.99	111.29	0.73692					8	5	2	0	0	0	0.82225	1	41690	41690		29.082	0	1	614930			17555	1333	12682	12777	17177	17177					0.07518291402743671
GLGTRAGPGVV	11	Unmodified	_GLGTRAGPGVV_					0	0	0			REV__nc|ENSG00000055917|Q8TB72-2|PUM2	REV__nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-MSMS	A375_MHC_IP_R2	2	492.6851501464844	2	492.285266	982.555979	-0.54265	-0.00026714	-0.008408	-4.1391E-06	-0.55106	-0.00027128	492.28514361079465	129.91	1.8218	130.12	129.39	131.21	0.2142					68	35	4	0	0	0	0.73135	1	51017	51017		7.609	0	1	121960000	+		17556	16418	12683	12778	17178	17178					0.06400278537375925
GLGVQRGH	8	Unmodified	_GLGVQRGH_					0	0	0			REV__ENST00000372324.5_1_1:44456265-44456820:+|nuORF	REV__ENST00000372324.5_1_1:44456265-44456820:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	412.6305847167969	2	412.230294	822.446034	0.3991	0.00016452	-0.035781	-1.475E-05	0.36332	0.00014977	412.2302209076744	109.21	2.6433	109.21	108.1	110.75	0					120	51	3	0	0	0	0.77686	2	39945	39735;39945		6.3541	0.59368	1	8592800	+		17557	24062	12684	12779	17179;17180	17180					0.02770897988852994
GLGVQRGH	8	Unmodified	_GLGVQRGH_					0	0	0			REV__ENST00000372324.5_1_1:44456265-44456820:+|nuORF	REV__ENST00000372324.5_1_1:44456265-44456820:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	412.6304016113281	2	412.230294	822.446034	0.05977	2.4639E-05	0.089698	3.6976E-05	0.14947	6.1615E-05	412.2302615784873	108.61	2.8049	109.36	108.29	111.1	0.74683					139	54	4	0	0	0	0.77554	1	40840	40840		11.114	0.93107	1	9664800	+		17558	24062	12684	12779	17181	17181					0.02770897988852994
GLGWYDPSL	9	Unmodified	_GLGWYDPSL_					0	0	0			REV__ENSG00000198873|ENST00000392870|GRK5	REV__ENSG00000198873|ENST00000392870|GRK5	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1300354003906	2	504.245275	1006.476	-0.63778	-0.0003216	-4.2596	-0.0021479	-4.8974	-0.0024695	504.74305226218905	108.85	0.8158	109.6	108.86	109.67	0.74684					19	15	2	0	0	0	0.74651	1	40886	40886		2.0598	0	1	1364400	+		17559	22435	12685	12780	17182	17182					-0.026982078564856238
GLHASWAGVQ	10	Unmodified	_GLHASWAGVQ_					0	0	0			REV__ENST00000227451.3_1_11:58972400-58972907:+|nuORF	REV__ENST00000227451.3_1_11:58972400-58972907:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	513.17529296875	2	513.261791	1024.50903	-0.51446	-0.00026405	-0.20148	-0.00010341	-0.71594	-0.00036746	513.7638971654745	95.959	0.30292	95.959	95.817	96.12	0					6	5	2	0	0	0	0.88918	1	35233	35233		13.042	0	1	510970	+		17560	23064	12686	12781	17183	17183					-0.0022458101377651474
GLHEDLNRV	9	Unmodified	_GLHEDLNRV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4;ENSG00000129204|ENST00000574788|USP6;nc|ENSG00000129204|P35125-3|USP6;nc|ENSG00000129204|P35125-2|USP6;ENST00000575709.5_1_17:5042349-5076270:+|nuORF;ENSG00000170832|ENST00000300896|USP32	ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000129204|ENST00000574788|USP6;ENSG00000170832|ENST00000300896|USP32	ENSG00000102226|ENST00000377107|USP11	MULTI-MSMS	A375_MHC_IP_R1	1	351.9207458496094	3	351.520962	1051.54106	-0.59724	-0.00020994	0.25191	8.855E-05	-0.34533	-0.00012139	351.52103815224774	29.277	0.35523	29.277	29.098	29.453	0					11	6	2	0	0	0	0.02559	1	9161	9161		63.227	20.915	1	11319000			17561	2365;7544;4181;3210	12687	12782	17184	17184					0.0173478666936262
GLHEDLNRV	9	Unmodified	_GLHEDLNRV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4;ENSG00000129204|ENST00000574788|USP6;nc|ENSG00000129204|P35125-3|USP6;nc|ENSG00000129204|P35125-2|USP6;ENST00000575709.5_1_17:5042349-5076270:+|nuORF;ENSG00000170832|ENST00000300896|USP32	ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000129204|ENST00000574788|USP6;ENSG00000170832|ENST00000300896|USP32	ENSG00000102226|ENST00000377107|USP11	MULTI-SECPEP	A375_MHC_IP_R1	1	527.1771240234375	2	526.777805	1051.54106	-0.96617	-0.00050896	-0.84533	-0.0004453	-1.8115	-0.00095426	526.777692191	29.296	0.30382	29.296	29.149	29.453	0					7	5	2	0	0	0	0.16595	1	9176	9176		38.615	19.253	1	3594100			17562	2365;7544;4181;3210	12687	12782	17185	17185					0.0173478666936262
GLHEDLNRV	9	Unmodified	_GLHEDLNRV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4;ENSG00000129204|ENST00000574788|USP6;nc|ENSG00000129204|P35125-3|USP6;nc|ENSG00000129204|P35125-2|USP6;ENST00000575709.5_1_17:5042349-5076270:+|nuORF;ENSG00000170832|ENST00000300896|USP32	ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000129204|ENST00000574788|USP6;ENSG00000170832|ENST00000300896|USP32	ENSG00000102226|ENST00000377107|USP11	MULTI-MSMS	A375_MHC_IP_R2	2	351.9207458496094	3	351.520962	1051.54106	-0.76959	-0.00027053	-0.099385	-3.4936E-05	-0.86897	-0.00030546	351.5208693101123	28.56	0.25282	29.259	29.08	29.333	0.69872					7	4	2	0	0	0	0.082375	1	9880	9880		42.312	12.875	1	30282000			17563	2365;7544;4181;3210	12687	12782	17186	17186					0.0173478666936262
GLHFIGCG	8	Unmodified	_GLHFIGCG_					0	0	0			REV__Tigger4b_dup2156|chr16:29442250-29442588:-|1.1156413822050346|0.4872832370944458|1.2|472.0|20|2|anti-sense	REV__Tigger4b_dup2156|chr16:29442250-29442588:-|1.1156413822050346|0.4872832370944458|1.2|472.0|20|2|anti-sense	MULTI-SECPEP	A375_MHC_IP_R2	2	402.59716796875	2	402.197074	802.379594	0.18849	7.5809E-05	0.12179	4.8984E-05	0.31028	0.00012479	402.19700543264065	139.97	0.41255	140.03	139.85	140.26	0.059906					11	7	2	0	0	0	0.972	1	54836	54836		0	0	1	1806200	+		17564	28112	12688	12783	17187	17187					-0.02950053897404814
GLHFVVPSV	9	Unmodified	_GLHFVVPSV_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-SECPEP	A375_MHC_IP_R1	1	478.1735534667969	2	477.774003	953.533452	-0.29203	-0.00013952	-0.32736	-0.0001564	-0.61939	-0.00029593	477.7738095238368	93.048	0.81567	93.048	92.668	93.484	0					33	15	3	0	0	0	0.10216	1	34167	34167		56.541	33.393	1	10787000			17565	1349	12689	12784	17188	17188					0.05482679139765878
GLHFVVPSV	9	Unmodified	_GLHFVVPSV_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-SECPEP	A375_MHC_IP_R2	2	478.1739501953125	2	477.774003	953.533452	-0.46056	-0.00022004	-0.75255	-0.00035955	-1.2131	-0.00057959	477.77394918969514	92.17	0.80896	92.909	92.432	93.24	0.73901					36	15	4	0	0	0	0.04649	1	35001	35001		74.396	40.209	1	7309900			17566	1349	12689	12784	17189	17189					0.05482679139765878
GLHGICMTFL	10	Unmodified	_GLHGICMTFL_					0	0	0		ENSG00000113739|ENST00000265087|STC2	ENSG00000113739|ENST00000265087|STC2	ENSG00000113739|ENST00000265087|STC2	MULTI-SECPEP	A375_MHC_IP_R2	2	546.6716918945312	2	546.272455	1090.53036	-0.67989	-0.00037141	-1.1907	-0.00065046	-1.8706	-0.0010219	546.271841924951	68.281	0.76091	69.017	68.714	69.474	0.73512					27	13	3	0	0	0	0.76414	1	25911	25911		26.884	26.884	1	3355000			17567	3179	12690	12785	17190	17190					-0.011286553009313138
GLHGSCNSF	9	Unmodified	_GLHGSCNSF_					0	0	0			REV__ENST00000486964.5_1_2:86305209-86332944:-|nuORF	REV__ENST00000486964.5_1_2:86305209-86332944:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	461.1396789550781	2	461.197802	920.381051	-0.037981	-1.7517E-05	1.0309	0.00047546	0.99294	0.00045794	461.1983228103123	92.371	0.45708	92.371	92.16	92.617	0					11	8	2	0	0	0	0.71541	1	33899	33899		11.64	3.047	1	870410	+		17568	16543	12691	12786	17191	17191					-0.08232464599313971
GLHGSCNSF	9	Unmodified	_GLHGSCNSF_					0	0	0			REV__ENST00000486964.5_1_2:86305209-86332944:-|nuORF	REV__ENST00000486964.5_1_2:86305209-86332944:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	461.139892578125	2	461.197802	920.381051	-0.37196	-0.00017155	0.67932	0.0003133	0.30736	0.00014175	461.19813454201505	91.717	0.45833	92.452	92.172	92.63	0.7345					14	8	2	0	0	0	0.71541	1	34810	34810		11.64	3.047	1	1327000	+		17569	16543	12691	12786	17192	17192					-0.08232464599313971
GLHGWAFTL	9	Unmodified	_GLHGWAFTL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.R415Efs*11|1|0.09|ENSG00000167658|chr19:3980617-3980617|G/-|frameshift_variant;EEF2|p.V416Lfs*18|1|0.09|ENSG00000167658|chr19:3980618-3980619|-/AGCAATCCGCCTGCCTCAGCCTC|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	A375_MHC_IP_R1	1	501.6634521484375	2	501.263802	1000.51305	-0.12684	-6.3582E-05	0.11186	5.6071E-05	-0.014983	-7.5105E-06	501.26377691428564	107.98	0.96422	107.98	107.65	108.61	0					38	18	3	0	0	0	0.042987	1	39600	39600		67.035	30.991	1	8602300			17570	7207	12692	12787	17193	17193					0.012815084799399301
GLHGWAFTL	9	Unmodified	_GLHGWAFTL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.R415Efs*11|1|0.09|ENSG00000167658|chr19:3980617-3980617|G/-|frameshift_variant;EEF2|p.V416Lfs*18|1|0.09|ENSG00000167658|chr19:3980618-3980619|-/AGCAATCCGCCTGCCTCAGCCTC|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	A375_MHC_IP_R2	2	501.66357421875	2	501.263802	1000.51305	-0.67631	-0.00033901	-0.42171	-0.00021139	-1.098	-0.00055039	501.26355429635606	106.97	0.76146	107.73	107.39	108.15	0.75929					32	14	3	0	0	0	0.10558	1	40405	40405		49.669	9.2203	1	6582300			17571	7207	12692	12787	17194	17194					0.012815084799399301
GLHNFIDGL	9	Unmodified	_GLHNFIDGL_					0	0	0		nc|ENSG00000104635|Q15043-2|SLC39A14;nc|ENSG00000104635|Q15043-3|SLC39A14;ENSG00000104635|ENST00000381237|SLC39A14	nc|ENSG00000104635|Q15043-2|SLC39A14	nc|ENSG00000104635|Q15043-2|SLC39A14	MULTI-MSMS	A375_MHC_IP_R1	1	493.6584167480469	2	493.258717	984.50288	-0.30594	-0.00015091	0.011899	5.8691E-06	-0.29404	-0.00014504	493.258842752555	89.316	0.4059	89.316	89.12	89.526	0					13	7	2	0	0	0	0.091096	1	32838	32838		52.268	19.963	1	1111200			17572	2523	12693	12788	17195	17195					0.010009007546955218
GLHNFIDGL	9	Unmodified	_GLHNFIDGL_					0	0	0		nc|ENSG00000104635|Q15043-2|SLC39A14;nc|ENSG00000104635|Q15043-3|SLC39A14;ENSG00000104635|ENST00000381237|SLC39A14	nc|ENSG00000104635|Q15043-2|SLC39A14	nc|ENSG00000104635|Q15043-2|SLC39A14	MULTI-SECPEP	A375_MHC_IP_R2	2	493.6589050292969	2	493.258717	984.50288	-0.43827	-0.00021618	-0.081145	-4.0025E-05	-0.51941	-0.0002562	493.2586696950913	88.406	0.5056	89.138	88.925	89.431	0.7318					16	9	3	0	0	0	0.023756	1	33655	33655		71.134	37.031	1	1977400			17573	2523	12693	12788	17196	17196					0.010009007546955218
GLHNVVYGI	9	Unmodified	_GLHNVVYGI_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q831Sfs*11|1|0.38|ENSG00000125107|chr16:58555897-58555898|-/A|frameshift_variant	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	A375_MHC_IP_R1	1	486.6685485839844	2	486.269084	970.523616	-0.20894	-0.0001016	-0.50509	-0.00024561	-0.71402	-0.00034721	486.2688082686639	63.6	0.81949	63.6	63.018	63.837	0					31	15	3	0	0	0	0.011892	1	22975	22975		93.883	49.476	1	3508700			17574	3941	12694	12789	17197	17197					0.0371749113437545
GLHNVVYGI	9	Unmodified	_GLHNVVYGI_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q831Sfs*11|1|0.38|ENSG00000125107|chr16:58555897-58555898|-/A|frameshift_variant	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	A375_MHC_IP_R2	2	485.6607360839844	2	486.269084	970.523616	-0.65605	-0.00031902	-0.69096	-0.00033599	-1.347	-0.00065501	486.26892357382764	62.635	1.2668	63.377	62.571	63.838	0.74263					39	24	3	0	0	0	0.47368	1	23819	23819		20.454	5.6154	1	4542300			17575	3941	12694	12789	17198	17198					0.0371749113437545
GLHPDQYLP	9	Unmodified	_GLHPDQYLP_					0	0	0			REV__CUBN|p.L660H|1|0.4|ENSG00000107611|chr10:17085728-17085728|A/T|missense_variant	REV__CUBN|p.L660H|1|0.4|ENSG00000107611|chr10:17085728-17085728|A/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	520.664306640625	2	520.263999	1038.51345	-0.53273	-0.00027716	-0.2751	-0.00014313	-0.80783	-0.00042028	520.2637650043821	84.729	0.65999	85.465	85.222	85.882	0.73602					18	12	2	0	0	0	0.55818	1	32228	32228		16.942	16.942	1	1748700	+		17576	15937	12695	12790	17199	17199					-0.0042711659086762666
GLHPPVASL	9	Unmodified	_GLHPPVASL_					0	0	0			REV__ENST00000538731.2_1_12:132671869-132672118:-|nuORF	REV__ENST00000538731.2_1_12:132671869-132672118:-|nuORF	MSMS	A375_MHC_IP_R2	2	445.713134765625	2	445.758352	889.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.363	1	68.1	67.6	68.6	0.73631								0	0	0	0.15486	1	25520	25520		12.532	3.1841	1		+		17577	25936	12696	12791	17200	17200					0.052981061056470935
GLHSRQLV	8	Unmodified	_GLHSRQLV_					0	0	0			REV__ENST00000325643.5_1_9:90499938-90500478:+|nuORF	REV__ENST00000325643.5_1_9:90499938-90500478:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	455.1637878417969	2	455.266876	908.519199	-0.63173	-0.0002876	-2.46	-0.00112	-3.0917	-0.0014076	455.26575016221113	67.859	0.6584	67.859	67.449	68.108	0					15	12	2	0	0	0	0.95327	1	24595	24595		11.114	1.767	1	1160700	+		17578	23597	12697	12792	17201	17201					0.06128026711473922
GLHSVAEGV	9	Unmodified	_GLHSVAEGV_					0	0	0		nc|ENSG00000117174|Q9NWK9-2|ZNHIT6;ENSG00000117174|ENST00000370574|ZNHIT6	nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	MULTI-SECPEP	A375_MHC_IP_R1	1	435.12969970703125	2	434.729792	867.445031	-0.23765	-0.00010331	0.044814	1.9482E-05	-0.19283	-8.383E-05	434.7297602616493	32.001	0.76548	32.001	31.769	32.535	0					27	14	3	0	0	0	0.025883	1	10299	10299		89.427	45.568	1	6916400			17579	3462	12698	12793	17202	17202					0.006006388292917109
GLHSVAEGV	9	Unmodified	_GLHSVAEGV_					0	0	0		nc|ENSG00000117174|Q9NWK9-2|ZNHIT6;ENSG00000117174|ENST00000370574|ZNHIT6	nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	MULTI-SECPEP	A375_MHC_IP_R2	2	435.12957763671875	2	434.729792	867.445031	-0.2962	-0.00012877	-0.035683	-1.5512E-05	-0.33188	-0.00014428	434.7297179208494	31.323	0.66378	32.041	31.719	32.383	0.71856					25	12	3	0	0	0	0.025883	1	11062	11062		89.427	49.469	1	7168400			17580	3462	12698	12793	17203	17203					0.006006388292917109
GLIDAQQPDN	10	Unmodified	_GLIDAQQPDN_					0	0	0			REV__ENSG00000070269|ENST00000261556|TMEM260	REV__ENSG00000070269|ENST00000261556|TMEM260	MSMS	A375_MHC_IP_R2	2	535.6689453125	2	535.759278	1069.504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.39	1	107.15	106.65	107.65	0.75977								0	0	0	0.15265	1	40216	40216		12.241	0.06591	1		+		17581	16571	12699	12794	17204	17204					-0.027969296670335098
GLIDEIYGI	9	Unmodified	_GLIDEIYGI_					0	0	0		ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122734385-122734640:-|nuORF;ENST00000542790.1_1_12:122734385-122735751:-|nuORF	ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	MSMS	A375_MHC_IP_R1	1	497.16778564453125	2	496.768583	991.522613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.6	1	130.6	130.1	131.1	0								0	0	0	0.026037	1	50282	50282		81.864	21.474	1				17582	5105	12700	12795	17205	17205					0.026512319748235313
GLIDEIYGI	9	Unmodified	_GLIDEIYGI_					0	0	0		ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122734385-122734640:-|nuORF;ENST00000542790.1_1_12:122734385-122735751:-|nuORF	ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	MULTI-MSMS	A375_MHC_IP_R2	2	992.7313232421875	1	992.529889	991.522613	-0.0092343	-9.1653E-06	-0.62084	-0.00061621	-0.63008	-0.00062537	992.5292788008026	130.36	0.30359	130.58	130.45	130.75	0.2142					11	5	3	0	0	0	0.015336	1	51206	51206		89.427	4.0701	1	90090000			17583	5105	12700	12795	17206	17206					0.026512319748235313
GLIDEIYGI	9	Unmodified	_GLIDEIYGI_					0	0	0		ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122734385-122734640:-|nuORF;ENST00000542790.1_1_12:122734385-122735751:-|nuORF	ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	MULTI-MSMS	A375_MHC_IP_R2	2	497.1683349609375	2	496.768583	991.522613	-0.49094	-0.00024388	-0.073804	-3.6663E-05	-0.56474	-0.00028055	496.7684136303645	130.36	0.20261	130.58	130.45	130.65	0.2142					5	3	2	0	0	0	0.1209	1	51283	51283		46.921	10.877	1	8244300			17584	5105	12700	12795	17207	17207					0.026512319748235313
GLIDEKRTGGQ	11	Unmodified	_GLIDEKRTGGQ_					0	0	0			REV__ENST00000245206.9_1_16:58741141-58741300:-|nuORF	REV__ENST00000245206.9_1_16:58741141-58741300:-|nuORF	MSMS	A375_MHC_IP_R1	1	587.2337036132812	2	587.314751	1172.61495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.08	1	130.08	129.58	130.58	0								0	0	0	0.15016	1	50039	50039		20.415	4.2654	1		+		17585	23108	12701	12796	17208	17208					0.03554710041044018
GLIDELNEK	9	Unmodified	_GLIDELNEK_					0	0	0			REV__ZNF74|p.S30L|1|0.36|ENSG00000185252|chr22:20395387-20395387|C/T|missense_variant	REV__ZNF74|p.S30L|1|0.36|ENSG00000185252|chr22:20395387-20395387|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	516.1735229492188	2	515.774396	1029.53424	-1.3252	-0.0006835	-0.88732	-0.00045765	-2.2125	-0.0011412	515.7742513576314	53.035	0.71291	53.786	53.588	54.301	0.75105					17	13	2	0	0	0	0.13797	1	20023	20023		43.858	5.8843	1	2949200	+		17586	29053	12702	12797	17209	17209					0.02065428998139396
GLIDELNEK	9	Unmodified	_GLIDELNEK_					0	0	0			REV__ZNF74|p.S30L|1|0.36|ENSG00000185252|chr22:20395387-20395387|C/T|missense_variant	REV__ZNF74|p.S30L|1|0.36|ENSG00000185252|chr22:20395387-20395387|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	516.1735229492188	2	515.774396	1029.53424	-1.3252	-0.0006835	-0.88732	-0.00045765	-2.2125	-0.0011412	515.7742513576314	53.035	0.71291	53.786	53.588	54.301	0.75105					17	13	2	0	0	0	0.35487	1	20023	20023		43.858	15.685	1	2949200	+		17587	29053	12702	12797	17210	17210					0.02065428998139396
GLIDENPGL	9	Unmodified	_GLIDENPGL_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	A375_MHC_IP_R1	1	464.64239501953125	2	464.242732	926.470912	-0.2786	-0.00012934	-0.2627	-0.00012195	-0.54129	-0.00025129	464.24255785700916	87.517	0.91753	87.517	87.134	88.052	0					41	17	4	0	0	0	0.003087	1	32057	32057		158.2	69.299	1	19592000			17588	9866	12703	12798	17211	17211					0.004734882809088958
GLIDENPGL	9	Unmodified	_GLIDENPGL_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	A375_MHC_IP_R2	2	927.8848266601562	1	927.478188	926.470912	-0.15481	-0.00014358	0.14865	0.00013787	-0.006161	-5.7142E-06	927.4782899873036	86.799	1.3703	87.532	87.049	88.419	0.73301					66	26	4	0	0	0	0.0070829	2	32890	32890;33227		131.27	63.187	1	153040000			17589	9866	12703	12798	17212;17213	17212					0.004734882809088958
GLIDENPGL	9	Unmodified	_GLIDENPGL_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	A375_MHC_IP_R2	2	464.6423645019531	2	464.242732	926.470912	-0.46832	-0.00021741	0.30427	0.00014126	-0.16405	-7.6157E-05	464.2428068926542	86.801	0.71132	87.534	87.151	87.863	0.733					38	13	4	0	0	0	0.009271	1	32934	32934		103.75	39.512	1	22622000			17590	9866	12703	12798	17214	17214					0.004734882809088958
GLIDENPGL	9	Unmodified	_GLIDENPGL_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MATCH	A375_MHC_IP_R1	1		1	927.478188	926.470912	-0.10562	-9.7959E-05	-0.25593	-0.00023737	-0.36155	-0.00033533	927.4779145602322	87.517	1.2233	87.517	87.083	88.307	0	-0.0077083	-0.0001831	NaN	131.27	60	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166360000			17591	9866	12703	12798							0.004734882809088958
GLIDGRLTI	9	Unmodified	_GLIDGRLTI_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2;ENST00000561636.2_1_15:43423309-43423531:+|nuORF	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-SECPEP	A375_MHC_IP_R1	1	479.6896057128906	2	479.290017	956.565481	-0.59849	-0.00028685	0.088633	4.2481E-05	-0.50986	-0.00024437	479.2900582774122	91.174	1.265	91.174	90.845	92.11	0					61	24	4	0	0	0	0.0575	1	33447	33447		86.332	27.653	1	58566000			17592	3537	12704	12799	17215	17215					0.0854604682289164
GLIDGRLTI	9	Unmodified	_GLIDGRLTI_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2;ENST00000561636.2_1_15:43423309-43423531:+|nuORF	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	A375_MHC_IP_R2	2	479.6895446777344	2	479.290017	956.565481	-0.4526	-0.00021693	-0.094739	-4.5407E-05	-0.54734	-0.00026233	479.28994039439215	90.293	1.2683	91.025	90.648	91.916	0.7318					63	24	4	0	0	0	0.017727	2	34303	34303;34522		86.332	26.258	1	42431000			17593	3537	12704	12799	17216;17217	17216					0.0854604682289164
GLIDGVVEA	9	Unmodified	_GLIDGVVEA_					0	0	0		ENSG00000104824|ENST00000221419|HNRNPL	ENSG00000104824|ENST00000221419|HNRNPL	ENSG00000104824|ENST00000221419|HNRNPL	MULTI-MSMS	A375_MHC_IP_R1	1	872.8726196289062	1	872.472374	871.465098	-0.079973	-6.9774E-05	-0.070738	-6.1717E-05	-0.15071	-0.00013149	872.4723067118574	92.388	2.3864	92.388	91.956	94.343	0					116	46	5	0	0	0	0.0097736	1	34355	34355		112.59	15.519	1	473660000			17594	2539	12705	12800	17218	17218					0.024223897692309038
GLIDGVVEA	9	Unmodified	_GLIDGVVEA_					0	0	0		ENSG00000104824|ENST00000221419|HNRNPL	ENSG00000104824|ENST00000221419|HNRNPL	ENSG00000104824|ENST00000221419|HNRNPL	MULTI-MSMS	A375_MHC_IP_R2	2	872.3967895507812	1	872.472374	871.465098	-0.47279	-0.0004125	-0.18934	-0.0001652	-0.66214	-0.0005777	872.4721733582832	91.617	2.4826	92.351	91.97	94.453	0.7345					121	48	5	0	0	0	0.0086611	4	34808	34808;34918;35184;35419		128.37	31.291	1	445720000			17595	2539	12705	12800	17219;17220;17221;17222	17219					0.024223897692309038
GLIDHQTYL	9	Unmodified	_GLIDHQTYL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R1	1	530.239501953125	2	530.277106	1058.53966	-0.27889	-0.00014789	-0.094074	-4.9885E-05	-0.37296	-0.00019777	530.2770720736661	69.137	1.7235	69.137	68.26	69.983	0					91	33	3	0	0	0	0.0099737	1	25099	25099		96.367	29.023	1	243130000			17596	14788	12706	12801	17223	17223					0.012731525806202626
GLIDHQTYL	9	Unmodified	_GLIDHQTYL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R2	2	530.2391357421875	2	530.277106	1058.53966	-0.49791	-0.00026403	-0.073982	-3.9231E-05	-0.57189	-0.00030326	530.2770913912982	68.257	1.6255	68.993	68.154	69.779	0.73511					103	31	5	0	0	0	0.015356	2	25816	25816;26126		89.401	22.057	1	288870000			17597	14788	12706	12801	17224;17225	17224					0.012731525806202626
GLIDIENPNRV	11	Unmodified	_GLIDIENPNRV_					0	0	0		ENSG00000106244|ENST00000350498|PDAP1;ENST00000426447.3_1_7:98994307-99001137:-|nuORF	ENSG00000106244|ENST00000350498|PDAP1	ENSG00000106244|ENST00000350498|PDAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	620.6793823242188	2	620.338227	1238.6619	-0.94446	-0.00058588	-0.92072	-0.00057116	-1.8652	-0.001157	620.337434826077	72.01	0.35297	72.744	72.618	72.971	0.73421					8	6	2	0	0	0	0.83405	1	27348	27348		24.882	16.726	1	1211600			17598	2674	12707	12802	17226	17226					0.05211569592165688
GLIDKVNEL	9	Unmodified	_GLIDKVNEL_					0	0	0		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-SECPEP	A375_MHC_IP_R1	1	500.4749755859375	2	500.787307	999.560061	-0.38448	-0.00019254	-0.38131	-0.00019096	-0.7658	-0.0003835	500.78733428519047	73.467	1.0643	73.467	73.031	74.095	0					49	20	4	0	0	0	0.011236	1	26774	26774		118.07	14.32	1	21710000			17599	2227	12708	12803	17227	17227					0.060263232404167866
GLIDKVNEL	9	Unmodified	_GLIDKVNEL_					0	0	0		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-SECPEP	A375_MHC_IP_R2	2	501.1687316894531	2	500.787307	999.560061	-0.67611	-0.00033859	-0.75683	-0.00037901	-1.4329	-0.0007176	500.7872253810871	72.668	1.0665	73.404	72.872	73.938	0.73541					52	20	4	0	0	0	0.011143	1	27589	27589		136.39	29.205	1	25507000			17600	2227	12708	12803	17228	17228					0.060263232404167866
GLIDRQVTV	9	Unmodified	_GLIDRQVTV_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	A375_MHC_IP_R1	1	501.1927185058594	2	500.792924	999.571294	-0.38303	-0.00019182	0.093277	4.6712E-05	-0.28976	-0.00014511	500.7929488826832	57.742	0.65957	57.742	57.415	58.075	0					29	12	3	0	0	0	0.036758	1	20690	20690		99.755	21.027	1	17928000			17601	4099;14587	12709	12804	17229	17229					0.07149145334574314
GLIDVKPLGV	10	Unmodified	_GLIDVKPLGV_					0	0	0		ENST00000519276.1_1_5:158701561-158711936:+|nuORF;ENSG00000164332|ENST00000296786|UBLCP1	ENST00000519276.1_1_5:158701561-158711936:+|nuORF	ENST00000519276.1_1_5:158701561-158711936:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	506.2156066894531	2	505.815867	1009.61718	-0.43496	-0.00022001	1.2778	0.00064633	0.84284	0.00042632	505.81582094824364	95.549	0.65444	95.549	95.364	96.018	0					13	12	2	0	0	0	0.41513	1	35146	35146		53.404	27.063	1	1610300			17602	6828	12710	12805	17230	17230					0.11275790516799589
GLIEHQRIHTG	11	Unmodified	_GLIEHQRIHTG_					0	0	0		ENSG00000198315|ENST00000330236|ZKSCAN8	ENSG00000198315|ENST00000330236|ZKSCAN8	ENSG00000198315|ENST00000330236|ZKSCAN8	MULTI-MSMS	A375_MHC_IP_R1	1	631.2431640625	2	630.84401	1259.67347	-0.65617	-0.00041394	-1.4198	-0.00089565	-2.0759	-0.0013096	630.8433305445124	57.991	0.50778	57.991	57.72	58.228	0					14	9	2	0	0	0	0.65093	1	20841	20841		19.362	3.2128	1	1594500			17603	9254	12711	12806	17231	17231					0.054018114061591405
GLIEHQRIHTG	11	Unmodified	_GLIEHQRIHTG_					0	0	0		ENSG00000198315|ENST00000330236|ZKSCAN8	ENSG00000198315|ENST00000330236|ZKSCAN8	ENSG00000198315|ENST00000330236|ZKSCAN8	MULTI-MATCH	A375_MHC_IP_R2	2		2	630.84401	1259.67347	-1.1958	-0.00075433	-0.69834	-0.00044054	-1.8941	-0.0011949	630.8436987265433	57.193	0.35808	57.943	57.763	58.121	0.75015	-0.023907	0.00070157	NaN	19.362	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2212100			17604	9254	12711	12806							0.054018114061591405
GLIEIISNA	9	Unmodified	_GLIEIISNA_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480835.1_1_2:96943505-96944085:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	A375_MHC_IP_R1	1	465.6689453125	2	465.26875	928.522947	-0.40208	-0.00018707	0.57702	0.00026847	0.17494	8.1396E-05	465.26900350871415	120.11	0.50816	120.11	119.79	120.3	0					13	9	2	0	0	0	0.0099819	1	44503	44503		122.18	18.431	1	9598900			17605	5456	12712	12807	17232	17232					0.05582651694669494
GLIEIISNA	9	Unmodified	_GLIEIISNA_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480835.1_1_2:96943505-96944085:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MATCH	A375_MHC_IP_R2	2		2	465.26875	928.522947	-0.56918	-0.00026482	1.3314	0.00061944	0.76218	0.00035462	465.26941628480034	119.26	0.66301	119.79	119.27	119.94	0.5321	-0.15886	0.00052875	NaN	122.18	13	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16058000			17606	5456	12712	12807							0.05582651694669494
GLIEILKKV	9	Unmodified	_GLIEILKKV_					0	0	0		ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	MULTI-MSMS	A375_MHC_IP_R1	1	507.36883544921875	2	506.841885	1011.66922	-0.29964	-0.00015187	-0.31016	-0.0001572	-0.6098	-0.00030907	506.84166534585137	88.994	1.5208	88.994	88.663	90.184	0					87	29	5	0	0	0	0.04447	1	32621	32621		66.457	20.757	1	50067000			17607	2571	12713	12808	17233	17233					0.16384953930571555
GLIEILKKV	9	Unmodified	_GLIEILKKV_					0	0	0		ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	MULTI-MSMS	A375_MHC_IP_R2	2	507.3454895019531	2	506.841885	1011.66922	-0.66693	-0.00033803	0.1753	8.8849E-05	-0.49163	-0.00024918	506.8419051882578	87.919	1.3689	88.65	88.316	89.685	0.7318					77	26	5	0	0	0	0.17338	1	33802	33802		39.95	10.868	1	57439000			17608	2571	12713	12808	17234	17234					0.16384953930571555
GLIEKNIEL	9	Unmodified	_GLIEKNIEL_					0	0	0		ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	ENSG00000130816|ENST00000359526|DNMT1	ENSG00000130816|ENST00000359526|DNMT1	MULTI-MSMS	A375_MHC_IP_R1	1	515.2026977539062	2	514.802957	1027.59136	-0.43504	-0.00022396	0.13537	6.969E-05	-0.29966	-0.00015427	514.8028783294828	72.755	2.483	72.755	71.968	74.451	0					109	48	5	0	0	0	0.0018976	1	26418	26418		145.13	41.776	1	281770000			17609	4284	12714	12809	17235	17235					0.0786689627452688
GLIEKNIEL	9	Unmodified	_GLIEKNIEL_					0	0	0		ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	ENSG00000130816|ENST00000359526|DNMT1	ENSG00000130816|ENST00000359526|DNMT1	MULTI-MSMS	A375_MHC_IP_R2	2	515.2025756835938	2	514.802957	1027.59136	-1.0252	-0.00052779	0.15856	8.1628E-05	-0.86667	-0.00044616	514.8028652243734	71.905	2.8435	72.64	72.213	75.057	0.73421					139	55	5	0	0	0	0.0028938	1	27205	27205		157.8	46.508	1	294230000			17610	4284	12714	12809	17236	17236					0.0786689627452688
GLIENPALL	9	Unmodified	_GLIENPALL_					0	0	0		nc|ENSG00000065518|O95168-2|NDUFB4;ENSG00000065518|ENST00000184266|NDUFB4	nc|ENSG00000065518|O95168-2|NDUFB4	nc|ENSG00000065518|O95168-2|NDUFB4	MULTI-SECPEP	A375_MHC_IP_R1	1	939.05615234375	1	939.550959	938.543683	0.13758	0.00012927	-0.15854	-0.00014896	-0.02096	-1.9693E-05	939.5507607136051	111.28	0.87013	111.28	110.95	111.82	0					34	16	4	0	0	0	0.053904	1	40841	40841		85.272	0	1	19326000			17611	1385	12715	12810	17237	17237					0.07195242074340058
GLIENPALL	9	Unmodified	_GLIENPALL_					0	0	0		nc|ENSG00000065518|O95168-2|NDUFB4;ENSG00000065518|ENST00000184266|NDUFB4	nc|ENSG00000065518|O95168-2|NDUFB4	nc|ENSG00000065518|O95168-2|NDUFB4	MULTI-MSMS	A375_MHC_IP_R2	2	470.6787109375	2	470.279118	938.543683	-0.44039	-0.00020711	-0.16536	-7.7764E-05	-0.60575	-0.00028487	470.2787898584822	110.36	0.56274	111.1	110.83	111.4	0.73692					17	10	2	0	0	0	0.034481	1	41651	41651		71.134	0	1	1846600			17612	1385	12715	12810	17238	17238					0.07195242074340058
GLIENPALL	9	Unmodified	_GLIENPALL_					0	0	0		nc|ENSG00000065518|O95168-2|NDUFB4;ENSG00000065518|ENST00000184266|NDUFB4	nc|ENSG00000065518|O95168-2|NDUFB4	nc|ENSG00000065518|O95168-2|NDUFB4	MULTI-MATCH	A375_MHC_IP_R2	2		1	939.550959	938.543683	-0.062247	-5.8484E-05	0.32354	0.00030398	0.26129	0.0002455	939.5510991083459	110.38	0.76463	111.11	110.78	111.55	0.73692	-0.082638	0.00014202	NaN	85.272	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14348000			17613	1385	12715	12810							0.07195242074340058
GLIEQHEDA	9	Unmodified	_GLIEQHEDA_					0	0	0		ENSG00000179941|ENST00000650064|BBS10	ENSG00000179941|ENST00000650064|BBS10	ENSG00000179941|ENST00000650064|BBS10	MULTI-MSMS	A375_MHC_IP_R2	2	507.2418518066406	2	506.240721	1010.46689	-0.64608	-0.00032707	0.34959	0.00017698	-0.29648	-0.00015009	506.2403685082693	87.631	1.8698	88.363	88.066	89.936	0.7318					56	36	3	0	0	0	0.62719	1	33408	33408		13.508	0.97634	1	6599200			17614	8268	12716	12811	17239	17239					-0.03792601212808222
GLIEQHEDA	9	Unmodified	_GLIEQHEDA_					0	0	0		ENSG00000179941|ENST00000650064|BBS10	ENSG00000179941|ENST00000650064|BBS10	ENSG00000179941|ENST00000650064|BBS10	MULTI-MATCH	A375_MHC_IP_R1	1		2	506.240721	1010.46689	-0.29873	-0.00015123	1.7921	0.00090723	1.4934	0.000756	506.2415282609917	88.339	0.71394	88.339	88	88.714	0	-0.012155	0.0001324	NaN	13.508	38	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7819100			17615	8268	12716	12811							-0.03792601212808222
GLIGQLDEV	9	Unmodified	_GLIGQLDEV_					0	0	0		ENSG00000166170|ENST00000299204|BAG5;nc|ENSG00000166170|Q9UL15-2|BAG5	ENSG00000166170|ENST00000299204|BAG5	ENSG00000166170|ENST00000299204|BAG5	MULTI-MSMS	A375_MHC_IP_R1	1	472.6581115722656	2	472.258382	942.502212	-0.37104	-0.00017523	0.27755	0.00013107	-0.093493	-4.4153E-05	472.2584012786468	101.27	0.6088	101.27	100.94	101.55	0					27	11	3	0	0	0	0.040308	1	37175	37175		68.081	7.6912	1	4600200			17616	7035	12717	12812	17240	17240					0.028660613149895653
GLIGQLDEV	9	Unmodified	_GLIGQLDEV_					0	0	0		ENSG00000166170|ENST00000299204|BAG5;nc|ENSG00000166170|Q9UL15-2|BAG5	ENSG00000166170|ENST00000299204|BAG5	ENSG00000166170|ENST00000299204|BAG5	MULTI-MSMS	A375_MHC_IP_R2	2	472.657958984375	2	472.258382	942.502212	-0.37752	-0.00017829	0.38101	0.00017994	0.0034927	1.6494E-06	472.25839758734116	100.45	0.96989	101.21	100.63	101.6	0.76278					37	18	3	0	0	0	0.005759	1	38025	38025		133.7	48.345	1	5414700			17617	7035	12717	12812	17241	17241					0.028660613149895653
GLIGVGLINV	10	Unmodified	_GLIGVGLINV_					0	0	0		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-SECPEP	A375_MHC_IP_R2	2	478.201904296875	2	477.80276	953.590967	-0.58868	-0.00028127	-0.69885	-0.00033391	-1.2875	-0.00061519	477.8024103499316	129.2	0.25156	129.44	129.36	129.62	0.23946					5	4	2	0	0	0	0.78079	1	50805	50805		12.532	0	1	3389600			17618	5103	12718	12813	17242	17242					0.11231521345325746
GLIGVGLINV	10	Unmodified	_GLIGVGLINV_					0	0	0		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-MATCH	A375_MHC_IP_R1	1		2	477.80276	953.590967	-0.6663	-0.00031836	0.34416	0.00016444	-0.32214	-0.00015392	477.8031229823497	129.47	0.2542	129.47	129.35	129.6	0	0.016935	0.00044145	NaN	23.148	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2550400			17619	5103	12718	12813							0.11231521345325746
GLIKKKRKRK	10	Unmodified	_GLIKKKRKRK_					0	0	0			REV__ENST00000415226.1_1_2:237168173-237186074:+|nuORF	REV__ENST00000415226.1_1_2:237168173-237186074:+|nuORF	MSMS	A375_MHC_IP_R2	2	628.0349731445312	2	627.945873	1253.87719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.305	1	96.055	95.555	96.555	0.75045								0	0	0	0.15629	1	36206	36206		0.40072	0.093686	1		+		17620	24518	12719	12814	17243	17243					0.26041000638292644
GLINLKEKLLY	11	Unmodified	_GLINLKEKLLY_					0	0	0			REV__nc|ENSG00000170113|Q7RTP0-2|NIPA1	REV__nc|ENSG00000170113|Q7RTP0-2|NIPA1	MSMS	A375_MHC_IP_R1	1	435.2825012207031	3	435.270984	1302.79112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.596	1	51.596	51.096	52.096	0								0	0	0	0.16301	1	18320	18320		3.0723	0	1		+		17621	20966	12720	12815	17244	17244					0.15183951222297765
GLIPIHADPRL	11	Unmodified	_GLIPIHADPRL_					0	0	0		ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	401.63958740234375	3	401.239907	1200.69789	-0.32285	-0.00012954	0.62949	0.00025258	0.30664	0.00012303	401.2401203193312	73.447	0.86264	73.447	73.132	73.995	0					41	16	4	0	0	0	0.64767	1	26698	26698		19.615	6.6866	1	15883000			17622	7601	12721	12816	17245	17245					0.10557071559696851
GLIPIHADPRL	11	Unmodified	_GLIPIHADPRL_					0	0	0		ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	401.63958740234375	3	401.239907	1200.69789	-0.15026	-6.0289E-05	-0.13219	-5.3042E-05	-0.28245	-0.00011333	401.23984680241495	72.529	0.81216	73.264	72.922	73.734	0.73541					43	15	4	0	0	0	0.64767	1	27464	27464		19.615	3.4782	1	14288000			17623	7601	12721	12816	17246	17246					0.10557071559696851
GLIPIHADPRL	11	Unmodified	_GLIPIHADPRL_					0	0	0		ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	601.7556762695312	2	601.356222	1200.69789	-0.62686	-0.00037696	-0.054204	-3.2596E-05	-0.68106	-0.00040956	601.3560922242841	72.534	0.45647	73.27	72.973	73.429	0.73541					18	8	3	0	0	0	0.61555	1	27529	27529		33.445	17.598	1	2073200			17624	7601	12721	12816	17247	17247					0.10557071559696851
GLIQGVKSV	9	Unmodified	_GLIQGVKSV_					0	0	0		nc|ENSG00000132952|Q5W0Q7-2|USPL1;ENSG00000132952|ENST00000255304|USPL1	nc|ENSG00000132952|Q5W0Q7-2|USPL1	nc|ENSG00000132952|Q5W0Q7-2|USPL1	MULTI-MSMS	A375_MHC_IP_R1	1	451.1788330078125	2	450.779285	899.544017	0.022063	9.9457E-06	-0.38019	-0.00017138	-0.35812	-0.00016144	450.7790266620605	49.908	0.51105	49.908	49.642	50.153	0					13	9	2	0	0	0	0.054426	1	17697	17697		62.573	12.64	1	2026700			17625	4467	12722	12817	17248	17248					0.09022661794188025
GLIQGVKSV	9	Unmodified	_GLIQGVKSV_					0	0	0		nc|ENSG00000132952|Q5W0Q7-2|USPL1;ENSG00000132952|ENST00000255304|USPL1	nc|ENSG00000132952|Q5W0Q7-2|USPL1	nc|ENSG00000132952|Q5W0Q7-2|USPL1	MULTI-SECPEP	A375_MHC_IP_R2	2	451.1792297363281	2	450.779285	899.544017	-0.43078	-0.00019419	-0.032699	-1.474E-05	-0.46348	-0.00020893	450.7791975995698	49.009	0.56103	49.767	49.434	49.995	0.75737					13	10	2	0	0	0	0.11711	1	18421	18421		60.074	3.8969	1	1573900			17626	4467	12722	12817	17249	17249					0.09022661794188025
GLIQQKVGL	9	Unmodified	_GLIQQKVGL_					0	0	0			REV__ENST00000553854.1_1_14:82128143-82128728:+|nuORF	REV__ENST00000553854.1_1_14:82128143-82128728:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	478.70062255859375	2	478.300384	954.586216	-0.43197	-0.00020661	0.47968	0.00022943	0.047716	2.2822E-05	478.3005719708276	103.34	2.0842	103.34	102.81	104.89	0					89	40	4	0	0	0	0.1209	2	38066	38066;38460		46.921	3.8998	1	30619000	+		17627	26071	12723	12818	17250;17251	17250					0.10710637202578255
GLISGILRV	9	Unmodified	_GLISGILRV_					0	0	0		ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;nc|ENSG00000121749|Q8TC07|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	MULTI-SECPEP	A375_MHC_IP_R1	1	464.7030334472656	2	464.302927	926.591301	-0.17568	-8.1571E-05	-0.08028	-3.7274E-05	-0.25596	-0.00011884	464.3028125524771	104.71	0.70892	104.71	104.44	105.15	0					29	13	3	0	0	0	0.13064	1	38432	38432		65.235	0	1	3931900			17628	3734	12724	12819	17252	17252					0.125069410651804
GLISGILRV	9	Unmodified	_GLISGILRV_					0	0	0		ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;nc|ENSG00000121749|Q8TC07|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	MULTI-MSMS	A375_MHC_IP_R2	2	464.7026062011719	2	464.302927	926.591301	-0.56848	-0.00026395	0.26504	0.00012306	-0.30343	-0.00014089	464.3029891056795	103.56	0.60983	104.32	104.04	104.65	0.76428					19	11	2	0	0	0	0.021889	1	39203	39203		81.89	0	1	4115700			17629	3734	12724	12819	17253	17253					0.125069410651804
GLISSLRVV	9	Unmodified	_GLISSLRVV_					0	0	0		ENSG00000106537|ENST00000262067|TSPAN13	ENSG00000106537|ENST00000262067|TSPAN13	ENSG00000106537|ENST00000262067|TSPAN13	MULTI-MSMS	A375_MHC_IP_R1	1	472.7002258300781	2	472.300384	942.586216	-0.43554	-0.0002057	-0.077254	-3.6487E-05	-0.51279	-0.00024219	472.3002604226002	87.746	0.71167	87.746	87.34	88.052	0					26	13	3	0	0	0	0.029064	1	32198	32198		75.761	13.188	1	4016200			17630	2696	12725	12820	17254	17254					0.11262637202571568
GLISSLRVV	9	Unmodified	_GLISSLRVV_					0	0	0		ENSG00000106537|ENST00000262067|TSPAN13	ENSG00000106537|ENST00000262067|TSPAN13	ENSG00000106537|ENST00000262067|TSPAN13	MULTI-MSMS	A375_MHC_IP_R2	2	472.7001953125	2	472.300384	942.586216	-0.44034	-0.00020797	0.18769	8.8648E-05	-0.25264	-0.00011932	472.30046063065174	86.735	0.76465	87.468	86.948	87.712	0.733					29	14	3	0	0	0	0.029064	1	32964	32964		75.761	13.188	1	5212700			17631	2696	12725	12820	17255	17255					0.11262637202571568
GLISTTKEGLI	11	Unmodified	_GLISTTKEGLI_					0	0	0			REV__nc|ENSG00000168679|O15374-3|SLC16A4	REV__nc|ENSG00000168679|O15374-3|SLC16A4	MULTI-MSMS	A375_MHC_IP_R1	1	378.292236328125	3	377.892173	1130.65469	0.6466	0.00024435	-0.28617	-0.00010814	0.36043	0.0001362	377.8920670701921	45.416	0.50383	45.416	45.183	45.687	0					22	9	3	0	0	0	0.5509	1	15893	15893		27.129	2.1717	1	10673000	+		17632	20876	12726	12821	17256	17256					0.0945883699175738
GLISTTKEGLI	11	Unmodified	_GLISTTKEGLI_					0	0	0			REV__nc|ENSG00000168679|O15374-3|SLC16A4	REV__nc|ENSG00000168679|O15374-3|SLC16A4	MULTI-MSMS	A375_MHC_IP_R2	2	378.2920837402344	3	377.892173	1130.65469	0.13411	5.0678E-05	-0.18035	-6.8154E-05	-0.046247	-1.7476E-05	377.892001696288	44.444	0.76161	45.214	44.833	45.594	0.7691					28	14	3	0	0	0	0.5509	1	16591	16591		27.129	2.1717	1	8076700	+		17633	20876	12726	12821	17257	17257					0.0945883699175738
GLISTTKEGLI	11	Unmodified	_GLISTTKEGLI_					0	0	0			REV__nc|ENSG00000168679|O15374-3|SLC16A4	REV__nc|ENSG00000168679|O15374-3|SLC16A4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	377.892173	1130.65469	0.6466	0.00024435	-0.28617	-0.00010814	0.36043	0.0001362	377.8920670701921	45.416	0.50383	45.416	45.183	45.687	0	0.10145	-4.8117E-05	NaN	27.129	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10673000	+		17634	20876	12726	12821							0.0945883699175738
GLITKIEPV	9	Unmodified	_GLITKIEPV_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MSMS	A375_MHC_IP_R1	1	485.4964599609375	2	485.302593	968.590633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.417	1	85.417	84.917	85.917	0								0	0	0	0.15131	1	31304	31304		19.439	3.5918	1		+		17635	16825	12727	12822	17258	17258					0.10508101625475774
GLKATTKINW	10	Unmodified	_GLKATTKINW_					0	0	0		nc|ENSG00000186976|Q5THR3-6|EFCAB6;ENST00000404038.5_1_22:44079617-44178198:-|nuORF;nc|ENSG00000186976|Q5THR3-5|EFCAB6;nc|ENSG00000186976|Q5THR3-2|EFCAB6;ENSG00000186976|ENST00000262726|EFCAB6	nc|ENSG00000186976|Q5THR3-6|EFCAB6	nc|ENSG00000186976|Q5THR3-6|EFCAB6	MULTI-MSMS	A375_MHC_IP_R2	2	378.2887878417969	3	377.888874	1130.64479	-0.37083	-0.00014013	0.86072	0.00032526	0.48988	0.00018512	377.88910800434104	33.847	0.45505	34.599	34.298	34.753	0.75225					13	8	2	0	0	0	0.70312	1	12187	12187		10.899	0.74838	1	1724200			17636	8795	12728	12823	17259	17259					0.08469693777033172
GLKEGIPAL	9	Unmodified	_GLKEGIPAL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	A375_MHC_IP_R1	1	449.67340087890625	2	449.273835	896.533118	-0.28392	-0.00012756	0.4609	0.00020707	0.17698	7.9514E-05	449.27395716824844	65.899	1.0152	65.899	65.565	66.58	0					43	19	3	0	0	0	0.029064	1	23826	23826		75.761	7.6801	1	13184000			17637	7207	12729	12824	17260	17260					0.08071259419898524
GLKEGIPAL	9	Unmodified	_GLKEGIPAL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	449.273835	896.533118	-0.35833	-0.00016099	-0.0010779	-4.8427E-07	-0.35941	-0.00016147	449.2737686637301	65.034	1.016	65.772	65.359	66.375	0.73811	-0.063243	-0.00018141	NaN	75.761	46	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13010000			17638	7207	12729	12824							0.08071259419898524
GLKELSEYV	9	Unmodified	_GLKELSEYV_					0	0	0		nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	nc|ENSG00000082153|Q7L1Q6-2|BZW1	nc|ENSG00000082153|Q7L1Q6-2|BZW1	MULTI-SECPEP	A375_MHC_IP_R1	1	519.6793823242188	2	519.279315	1036.54408	-0.53275	-0.00027664	0.56141	0.00029153	0.028662	1.4884E-05	519.2795387727338	75.689	0.80582	75.689	75.413	76.219	0					22	15	2	0	0	0	0.31606	1	27563	27563		32.786	0	1	4383900			17639	1753	12730	12825	17261	17261					0.02726617003509091
GLKELSEYV	9	Unmodified	_GLKELSEYV_					0	0	0		nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	nc|ENSG00000082153|Q7L1Q6-2|BZW1	nc|ENSG00000082153|Q7L1Q6-2|BZW1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.6791381835938	2	519.279315	1036.54408	-0.7456	-0.00038717	0.58439	0.00030346	-0.16121	-8.3712E-05	519.2795123618583	74.807	0.65746	75.545	75.315	75.973	0.73752					23	12	3	0	0	0	0.46045	1	28397	28397		22.736	4.5899	1	5332000			17640	1753	12730	12825	17262	17262					0.02726617003509091
GLKFASIN	8	Unmodified	_GLKFASIN_					0	0	0			REV__tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1	REV__tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1	MSMS	A375_MHC_IP_R2	2	425.16534423828125	2	425.245078	848.475603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.722	1	92.457	91.957	92.957	0.7345								0	0	0	0.16876	1	34886	34886		37.974	8.8924	1		+		17641	28222	12731	12826	17263	17263					0.04530417214334648
GLKGRVFEV	9	Unmodified	_GLKGRVFEV_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000419176.1_1_10:70434132-70434327:+|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-SECPEP	A375_MHC_IP_R1	1	503.1973571777344	2	502.798009	1003.58147	-0.13508	-6.7919E-05	-0.44588	-0.00022419	-0.58096	-0.0002921	502.7976470692841	43.043	0.45872	43.043	42.79	43.249	0					21	8	3	0	0	0	0.30925	1	14939	14939		49.554	16.769	1	9465200			17642	5559	12732	12827	17264	17264					0.07981753059800667
GLKIARESL	9	Unmodified	_GLKIARESL_					0	0	0		ENSG00000136868|ENST00000374212|SLC31A1	ENSG00000136868|ENST00000374212|SLC31A1	ENSG00000136868|ENST00000374212|SLC31A1	MULTI-SECPEP	A375_MHC_IP_R1	1	494.20355224609375	2	493.803291	985.59203	-0.27832	-0.00013743	0.10935	5.3997E-05	-0.16897	-8.3437E-05	493.8032381301752	63.108	0.51287	63.108	62.813	63.326	0					14	9	2	0	0	0	0.3213	1	22825	22825		46.021	9.8939	1	2200300			17643	4831	12733	12828	17265	17265					0.09865735714231505
GLKLQQRW	8	Unmodified	_GLKLQQRW_					0	0	0		CD22|p.R710Q|1|0.36|ENSG00000012124|chr19:35344922-35344922|G/A|missense_variant	CD22|p.R710Q|1|0.36|ENSG00000012124|chr19:35344922-35344922|G/A|missense_variant	CD22|p.R710Q|1|0.36|ENSG00000012124|chr19:35344922-35344922|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	515.2032470703125	2	514.803626	1027.5927	-0.1968	-0.00010132	-0.33705	-0.00017351	-0.53385	-0.00027483	514.8034305460067	45.406	0.40222	45.406	45.183	45.585	0					17	7	3	0	0	0	0.93416	1	15873	15873		14.582	0	1	5066700			17644	331	12734	12829	17266	17266					0.08000575153937461
GLKNGVPAV	9	Unmodified	_GLKNGVPAV_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	A375_MHC_IP_R1	1	428.1583557128906	2	427.758352	853.502152	0.034937	1.4944E-05	-0.098949	-4.2326E-05	-0.064012	-2.7382E-05	427.758336868347	37.428	2.2431	37.428	37.045	39.289	0					124	43	6	0	0	0	0.050162	1	13011	13011		64.236	19.829	1	492890000			17645	3768	12735	12830	17267	17267					0.06954106105649771
GLKNGVPAV	9	Unmodified	_GLKNGVPAV_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	A375_MHC_IP_R2	2	428.157958984375	2	427.758352	853.502152	-0.53145	-0.00022733	0.027486	1.1757E-05	-0.50397	-0.00021558	427.7583729010711	36.462	2.3969	37.232	36.85	39.247	0.7709					116	46	5	0	0	0	0.03063	1	13713	13713		74.423	20.847	1	514240000			17646	3768	12735	12830	17268	17268					0.06954106105649771
GLKNTQIGLL	10	Unmodified	_GLKNTQIGLL_					0	0	0		tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1	tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1	tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	353.28521728515625	3	352.885241	1055.63389	-0.21868	-7.7168E-05	0.079564	2.8077E-05	-0.13911	-4.9091E-05	352.88523475133377	65.635	0.71207	65.635	65.36	66.072	0					31	13	3	0	0	0	0.13478	1	23751	23751		40.725	10.021	1	14740000			17647	29935	12736	12831	17269	17269					0.10830291402771763
GLKRRRKLLVL	11	Unmodified	_GLKRRRKLLVL_					0	0	0		ENST00000446105.6_1_12:6761840-6762457:-|nuORF;ENST00000444704.5_1_12:6761840-6762457:-|nuORF	ENST00000446105.6_1_12:6761840-6762457:-|nuORF	ENST00000446105.6_1_12:6761840-6762457:-|nuORF	MSMS	A375_MHC_IP_R2	2	676.5108032226562	2	676.472255	1350.92996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.44	1	118.1	117.6	118.6	0.65962								0	0	0	0.16331	1	44443	44443		1.4819	0	1				17648	12019	12737	12832	17270	17270					0.2685295870112441
GLKSKGVIV	9	Unmodified	_GLKSKGVIV_					0	0	0			REV__nc|ENSG00000176834|Q8N0Z9-2|VSIG10	REV__nc|ENSG00000176834|Q8N0Z9-2|VSIG10	MULTI-MSMS	A375_MHC_IP_R2	2	450.6819152832031	2	450.797478	899.580402	-0.19356	-8.7257E-05	-0.2891	-0.00013033	-0.48266	-0.00021758	450.79728474407017	89.766	0.46213	90.498	90.186	90.648	0.7318					14	8	2	0	0	0	0.60101	1	34067	34067		14.838	3.198	1	1478100	+		17649	21420	12738	12833	17271	17271					0.12659538690900263
GLKTDLVTINP	11	Unmodified	_GLKTDLVTINP_					0	0	0		ST8SIA2|p.M205I|1|0.46|ENSG00000140557|chr15:92444702-92444702|G/A|missense_variant	ST8SIA2|p.M205I|1|0.46|ENSG00000140557|chr15:92444702-92444702|G/A|missense_variant	ST8SIA2|p.M205I|1|0.46|ENSG00000140557|chr15:92444702-92444702|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	586.240478515625	2	585.840071	1169.66559	-0.18332	-0.0001074	0.15388	9.0149E-05	-0.029444	-1.7249E-05	585.8401371477943	70.867	0.56208	70.867	70.597	71.159	0					27	10	4	0	0	0	0.98595	1	25728	25728		21.59	0	1	5638800			17650	29256	12739	12834	17272	17272					0.0875423936606694
GLLDGYKFEW	10	Unmodified	_GLLDGYKFEW_					0	0	0			REV__ENSG00000102805|ENST00000377453|CLN5	REV__ENSG00000102805|ENST00000377453|CLN5	MULTI-MSMS	A375_MHC_IP_R2	2	410.2725524902344	3	409.873001	1226.59717	-0.41419	-0.00016976	-0.35293	-0.00014466	-0.76712	-0.00031442	409.8728134676189	52.457	0.55644	53.209	52.932	53.489	0.75225					17	10	3	0	0	0	0.70312	1	19791	19791		10.899	1.1347	1	2418100	+		17651	17235	12740	12835	17273	17273					-0.007060052138058381
GLLDGYKFEW	10	Unmodified	_GLLDGYKFEW_					0	0	0			REV__ENSG00000102805|ENST00000377453|CLN5	REV__ENSG00000102805|ENST00000377453|CLN5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	409.873001	1226.59717	-0.41419	-0.00016976	-0.35293	-0.00014466	-0.76712	-0.00031442	409.8728134676189	52.457	0.55644	53.209	52.932	53.489	0.75225	-0.051956	0.00010868	NaN	10.899	17	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2418100	+		17652	17235	12740	12835							-0.007060052138058381
GLLDNHPLWEI	11	Unmodified	_GLLDNHPLWEI_					0	0	0			REV__UGT8|p.Q343H|1|0.38|ENSG00000174607|chr4:114665743-114665743|A/T|missense_variant	REV__UGT8|p.Q343H|1|0.38|ENSG00000174607|chr4:114665743-114665743|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	435.66357421875	3	436.231189	1305.67174	-0.31856	-0.00013896	0.026558	1.1585E-05	-0.292	-0.00012738	436.23119446305765	62.618	0.75973	63.361	62.976	63.736	0.74263					24	14	2	0	0	0	0.99999	1	23756	23756		0.50596	0	1	1717900	+		17653	28952	12741	12836	17274	17274					0.03112757597568816
GLLDNHPLWEI	11	Unmodified	_GLLDNHPLWEI_					0	0	0			REV__UGT8|p.Q343H|1|0.38|ENSG00000174607|chr4:114665743-114665743|A/T|missense_variant	REV__UGT8|p.Q343H|1|0.38|ENSG00000174607|chr4:114665743-114665743|A/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	436.231189	1305.67174	-0.10537	-4.5964E-05	0.16359	7.1362E-05	0.058222	2.5398E-05	436.23120951508963	63.542	0.76874	63.542	62.966	63.735	0	0.090721	0.00012742	NaN	0.50596	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1466500	+		17654	28952	12741	12836							0.03112757597568816
GLLDSSIYL	9	Unmodified	_GLLDSSIYL_					0	0	0			REV__ENST00000318789.8_1_3:71006977-71007181:-|nuORF	REV__ENST00000318789.8_1_3:71006977-71007181:-|nuORF	MSMS	A375_MHC_IP_R1	1	490.6686706542969	2	490.768583	979.522613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.25	1	115.25	114.75	115.75	0								0	0	0	0.1521	1	42264	42264		18.135	0	1		+		17655	23556	12742	12837	17275	17275					0.032032319747941074
GLLEEHPLLL	10	Unmodified	_GLLEEHPLLL_					0	0	0			REV__ENST00000336095.10_1_20:3914522-3914756:-|nuORF	REV__ENST00000336095.10_1_20:3914522-3914756:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	567.1968383789062	2	567.331882	1132.64921	-0.066199	-3.7557E-05	0.41257	0.00023407	0.34638	0.00019651	567.833513682921	112.26	0.35699	112.26	112.08	112.43	0					11	6	2	0	0	0	0.69172	1	41178	41178		19.257	0	1	1044400	+		17656	23679	12743	12838	17276	17276					0.0881915819995811
GLLEELKTV	9	Unmodified	_GLLEELKTV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	A375_MHC_IP_R1	1	501.69720458984375	2	501.297507	1000.58046	-0.47285	-0.00023704	0.41878	0.00020993	-0.054076	-2.7108E-05	501.29751111801824	95.421	0.40558	95.421	95.109	95.515	0					12	7	2	0	0	0	0.13244	1	35096	35096		59.368	13.347	1	1237600			17657	1916	12744	12839	17277	17277					0.08019493900235375
GLLEELKTV	9	Unmodified	_GLLEELKTV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	A375_MHC_IP_R2	2	501.6963806152344	2	501.297507	1000.58046	-0.38014	-0.00019056	-0.25936	-0.00013002	-0.63951	-0.00032058	501.29731751788006	94.387	0.4561	95.132	94.919	95.375	0.74473					12	7	2	0	0	0	0.0099737	2	35890	35890;35905		96.367	24.444	1	1512400			17658	1916	12744	12839	17278;17279	17278					0.08019493900235375
GLLEELVTV	9	Unmodified	_GLLEELVTV_					0	0	0		ENSG00000204839|ENST00000398882|MROH6;ENST00000533210.5_1_8:144649355-144650416:-|nuORF	ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	MULTI-SECPEP	A375_MHC_IP_R2	2	487.1839294433594	2	486.784233	971.553913	-0.57507	-0.00027993	0.287	0.00013971	-0.28806	-0.00014022	486.78429724180694	131.53	0.25507	131.72	131.59	131.85	0.18953					10	4	3	0	0	0	0.10969	1	51752	51752		67.344	12.57	1	5696500			17659	9481	12745	12840	17280	17280					0.06699805008906878
GLLEFLRPA	9	Unmodified	_GLLEFLRPA_					0	0	0		ENST00000462880.1_1_1:153631216-153631939:+|nuORF;ENST00000474959.5_1_1:153631216-153631408:+|nuORF;ENSG00000143553|ENST00000368685|SNAPIN	ENST00000462880.1_1_1:153631216-153631939:+|nuORF	ENST00000462880.1_1_1:153631216-153631939:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	508.7000427246094	2	508.300384	1014.58622	0.057743	2.9351E-05	-0.15964	-8.1144E-05	-0.1019	-5.1793E-05	508.3001178562018	113.42	0.60794	113.42	113.09	113.7	0					21	11	3	0	0	0	0.02559	1	41579	41579		78.728	49.646	1	5151500			17660	5408	12746	12841	17281	17281					0.07950637202554844
GLLEFLRPA	9	Unmodified	_GLLEFLRPA_					0	0	0		ENST00000462880.1_1_1:153631216-153631939:+|nuORF;ENST00000474959.5_1_1:153631216-153631408:+|nuORF;ENSG00000143553|ENST00000368685|SNAPIN	ENST00000462880.1_1_1:153631216-153631939:+|nuORF	ENST00000462880.1_1_1:153631216-153631939:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	508.6992492675781	2	508.300384	1014.58622	-0.53249	-0.00027067	0.049093	2.4954E-05	-0.4834	-0.00024571	508.3002720078278	112.39	0.66124	113.12	112.82	113.48	0.72458					22	12	3	0	0	0	0.02559	1	42383	42383		78.728	54.707	1	3441500			17661	5408	12746	12841	17282	17282					0.07950637202554844
GLLEGVRGV	9	Unmodified	_GLLEGVRGV_					0	0	0		ENSG00000162722|ENST00000366481|TRIM58	ENSG00000162722|ENST00000366481|TRIM58	ENSG00000162722|ENST00000366481|TRIM58	MULTI-MSMS	A375_MHC_IP_R1	1	450.6689147949219	2	450.269084	898.523616	-0.29609	-0.00013332	0.85271	0.00038395	0.55662	0.00025063	450.2694666843159	66.012	2.2902	66.012	64.393	66.684	0					66	44	3	0	0	0	0.070818	1	23932	23932		56.177	11.77	1	10013000			17662	6581	12747	12842	17283	17283					0.07029491134380805
GLLEIVTSV	9	Unmodified	_GLLEIVTSV_					0	0	0		ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B;HEATR5B|p.N1450Ifs*20|1|0.31|ENSG00000008869|chr2:37008789-37008789|A/-|frameshift_variant	ENSG00000008869|ENST00000233099|HEATR5B;HEATR5B|p.N1450Ifs*20|1|0.31|ENSG00000008869|chr2:37008789-37008789|A/-|frameshift_variant	ENSG00000008869|ENST00000233099|HEATR5B	MULTI-MSMS	A375_MHC_IP_R1	1	466.17913818359375	2	465.778951	929.543348	-0.45623	-0.0002125	0.56648	0.00026386	0.11025	5.1354E-05	465.7792017442574	130.39	0.71109	130.39	130.21	130.92	0					23	13	4	0	0	0	0.0053385	1	50178	50178		162.95	39.855	1	81870000			17663	965;14103	12748	12843	17284	17284					0.07575822354488082
GLLEIVTSV	9	Unmodified	_GLLEIVTSV_					0	0	0		ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B;HEATR5B|p.N1450Ifs*20|1|0.31|ENSG00000008869|chr2:37008789-37008789|A/-|frameshift_variant	ENSG00000008869|ENST00000233099|HEATR5B;HEATR5B|p.N1450Ifs*20|1|0.31|ENSG00000008869|chr2:37008789-37008789|A/-|frameshift_variant	ENSG00000008869|ENST00000233099|HEATR5B	MULTI-MSMS	A375_MHC_IP_R2	2	466.1791076660156	2	465.778951	929.543348	-0.67239	-0.00031318	0.093783	4.3682E-05	-0.5786	-0.0002695	465.7789204477349	130.16	0.50624	130.37	130.1	130.6	0.2142					19	9	4	0	0	0	0.0053385	1	51141	51141		162.95	39.855	1	61565000			17664	965;14103	12748	12843	17285	17285					0.07575822354488082
GLLEIVTSV	9	Unmodified	_GLLEIVTSV_					0	0	0		ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B;HEATR5B|p.N1450Ifs*20|1|0.31|ENSG00000008869|chr2:37008789-37008789|A/-|frameshift_variant	ENSG00000008869|ENST00000233099|HEATR5B;HEATR5B|p.N1450Ifs*20|1|0.31|ENSG00000008869|chr2:37008789-37008789|A/-|frameshift_variant	ENSG00000008869|ENST00000233099|HEATR5B	MULTI-SECPEP	A375_MHC_IP_R2	2	930.9520263671875	1	930.550625	929.543348	-0.28929	-0.0002692	-0.41164	-0.00038305	-0.70093	-0.00065225	930.5500963924393	130.15	0.40463	130.37	130.2	130.6	0.2142					12	7	3	0	0	0	0.07754	1	51230	51230		64.236	6.765	1	43472000			17665	965;14103	12748	12843	17286	17286					0.07575822354488082
GLLEIVTSV	9	Unmodified	_GLLEIVTSV_					0	0	0		ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B;HEATR5B|p.N1450Ifs*20|1|0.31|ENSG00000008869|chr2:37008789-37008789|A/-|frameshift_variant	ENSG00000008869|ENST00000233099|HEATR5B;HEATR5B|p.N1450Ifs*20|1|0.31|ENSG00000008869|chr2:37008789-37008789|A/-|frameshift_variant	ENSG00000008869|ENST00000233099|HEATR5B	MULTI-MATCH	A375_MHC_IP_R1	1		1	930.550625	929.543348	-0.26379	-0.00024547	0.89544	0.00083325	0.63165	0.00058778	930.5513070522899	130.4	0.40698	130.4	130.21	130.62	0	0.016502	0.0011136	NaN	64.236	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104160000			17666	965;14103	12748	12843							0.07575822354488082
GLLEKGVYV	9	Unmodified	_GLLEKGVYV_					0	0	0		ENSG00000144596|ENST00000621039|GRIP2;nc|ENSG00000155974|Q9Y3R0-3|GRIP1;nc|ENSG00000155974|Q9Y3R0-2|GRIP1;ENSG00000155974|ENST00000359742|GRIP1	ENSG00000144596|ENST00000621039|GRIP2;nc|ENSG00000155974|Q9Y3R0-3|GRIP1	ENSG00000144596|ENST00000621039|GRIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	489.6866760253906	2	489.286943	976.559333	-0.44702	-0.00021872	0.30164	0.00014759	-0.14538	-7.1133E-05	489.28703482044597	68.514	0.81174	68.514	68.108	68.92	0					26	15	3	0	0	0	0.4465	1	24865	24865		38.176	9.094	1	2780100			17667	5497;6168	12749	12844	17287	17287					0.0701152859138574
GLLEKLTAI	9	Unmodified	_GLLEKLTAI_					0	0	0		ENSG00000141384|ENST00000269142|TAF4B	ENSG00000141384|ENST00000269142|TAF4B	ENSG00000141384|ENST00000269142|TAF4B	MULTI-SECPEP	A375_MHC_IP_R1	1	479.7025146484375	2	479.302593	956.590633	-0.2708	-0.00012979	0.44445	0.00021303	0.17365	8.323E-05	479.3028105855651	106.31	0.61426	106.31	106.01	106.62	0					20	11	2	0	0	0	0.03341	1	39012	39012		103.42	14.516	1	3328000			17668	5233	12750	12845	17288	17288					0.1106010162544635
GLLEKLTAI	9	Unmodified	_GLLEKLTAI_					0	0	0		ENSG00000141384|ENST00000269142|TAF4B	ENSG00000141384|ENST00000269142|TAF4B	ENSG00000141384|ENST00000269142|TAF4B	MULTI-SECPEP	A375_MHC_IP_R2	2	479.7023010253906	2	479.302593	956.590633	-0.51437	-0.00024654	0.16002	7.6698E-05	-0.35434	-0.00016984	479.3025036292278	105.23	0.81358	105.99	105.67	106.48	0.76308					23	15	3	0	0	0	0.0575	1	39787	39787		86.332	8.1825	1	3296100			17669	5233	12750	12845	17289	17289					0.1106010162544635
GLLENIRQL	9	Unmodified	_GLLENIRQL_					0	0	0		ENST00000487055.1_1_5:132036305-132039285:-|nuORF;nc|ENSG00000131437|Q9Y496|KIF3A;ENSG00000131437|ENST00000403231|KIF3A	ENST00000487055.1_1_5:132036305-132039285:-|nuORF	ENST00000487055.1_1_5:132036305-132039285:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	528.7139282226562	2	528.314023	1054.61349	-0.77853	-0.00041131	-0.30335	-0.00016026	-1.0819	-0.00057157	528.3138791791561	90.871	0.66035	90.871	90.539	91.199	0					22	12	2	0	0	0	0.011066	1	33356	33356		137.42	52.152	1	15641000			17670	4329	12751	12846	17290	17290					0.08837120742941806
GLLENIRQL	9	Unmodified	_GLLENIRQL_					0	0	0		ENST00000487055.1_1_5:132036305-132039285:-|nuORF;nc|ENSG00000131437|Q9Y496|KIF3A;ENSG00000131437|ENST00000403231|KIF3A	ENST00000487055.1_1_5:132036305-132039285:-|nuORF	ENST00000487055.1_1_5:132036305-132039285:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6493530273438	2	528.314023	1054.61349	-0.42386	-0.00022393	-0.1523	-8.0465E-05	-0.57617	-0.0003044	528.3138958060678	90.044	0.71566	90.776	90.391	91.106	0.7318					23	13	2	0	0	0	0.0042279	1	34259	34259		149.91	42.974	1	14218000			17671	4329	12751	12846	17291	17291					0.08837120742941806
GLLERVKEL	9	Unmodified	_GLLERVKEL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	A375_MHC_IP_R1	1	528.181640625	2	528.824224	1055.63389	-0.67597	-0.00035747	0.10042	5.3104E-05	-0.57555	-0.00030437	528.8242638056628	65.626	0.76207	65.626	65.36	66.122	0					42	14	4	0	0	0	0.019499	1	23756	23756		114.2	10.453	1	29470000			17672	3330	12752	12847	17292	17292					0.10830291402771763
GLLERVKEL	9	Unmodified	_GLLERVKEL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	A375_MHC_IP_R2	2	529.2238159179688	2	528.824224	1055.63389	-0.50545	-0.00026729	-0.12757	-6.7461E-05	-0.63302	-0.00033476	528.8241437573474	64.546	0.86509	65.286	65.004	65.869	0.74022					43	16	4	0	0	0	0.0024528	1	24447	24447		139.78	32.595	1	25186000			17673	3330	12752	12847	17293	17293					0.10830291402771763
GLLFFNTL	8	Unmodified	_GLLFFNTL_					0	0	0			REV__OR5W2|p.D11N|1|0.4|ENSG00000187612|chr11:55914552-55914552|C/T|missense_variant	REV__OR5W2|p.D11N|1|0.4|ENSG00000187612|chr11:55914552-55914552|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	463.1605529785156	2	462.763104	923.511654	-0.61589	-0.00028501	-3.1967	-0.0014793	-3.8126	-0.0017643	462.7613123964729	66.784	0.45883	67.52	67.24	67.698	0.73631					13	8	2	0	0	0	0.8824	1	25338	25338		23.148	15.238	1	1117700	+		17674	27692	12753	12848	17294	17294					0.046838743911848724
GLLFFNTL	8	Unmodified	_GLLFFNTL_					0	0	0			REV__OR5W2|p.D11N|1|0.4|ENSG00000187612|chr11:55914552-55914552|C/T|missense_variant	REV__OR5W2|p.D11N|1|0.4|ENSG00000187612|chr11:55914552-55914552|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	462.763104	923.511654	-0.59132	-0.00027364	-3.0376	-0.0014057	-3.629	-0.0016793	462.7614915975017	67.68	0.45559	67.68	67.399	67.854	0	0.079754	6.3631E-05	NaN	38.151	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	933230	+		17675	27692	12753	12848							0.046838743911848724
GLLGAGGTVSV	11	Unmodified	_GLLGAGGTVSV_					0	0	0		ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50;ENST00000595286.1_1_19:39971511-39973801:+|nuORF;ENST00000598125.5_1_19:39971493-39973604:+|nuORF	ENSG00000105197|ENST00000607714|TIMM50	ENSG00000105197|ENST00000607714|TIMM50	MULTI-MSMS	A375_MHC_IP_R1	1	930.3397827148438	1	930.525473	929.518196	-0.23541	-0.00021905	0.20333	0.0001892	-0.032077	-2.9849E-05	930.525474488041	90.412	0.55862	90.412	90.133	90.692	0					17	10	2	0	0	0	0.00075349	1	33237	33237		107.19	51.01	1	5236600			17676	2574	12754	12849	17295	17295					0.05061767551910634
GLLGAGGTVSV	11	Unmodified	_GLLGAGGTVSV_					0	0	0		ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50;ENST00000595286.1_1_19:39971511-39973801:+|nuORF;ENST00000598125.5_1_19:39971493-39973604:+|nuORF	ENSG00000105197|ENST00000607714|TIMM50	ENSG00000105197|ENST00000607714|TIMM50	MULTI-SECPEP	A375_MHC_IP_R2	2	930.3396606445312	1	930.525473	929.518196	-0.18272	-0.00017002	-0.050674	-4.7153E-05	-0.23339	-0.00021718	930.5253171656367	89.547	0.61165	90.279	89.985	90.597	0.7318					19	11	2	0	0	0	0.62518	1	34170	34170		41.84	20.093	1	5774400			17677	2574	12754	12849	17296	17296					0.05061767551910634
GLLGFVRQV	9	Unmodified	_GLLGFVRQV_					0	0	0		nc|ENSG00000173482|P28827|PTPRM;ENSG00000173482|ENST00000580170|PTPRM;FAM59A-PTPRM|2|fusion;FAM59A-PTPRM|1|fusion;ENST00000577827.5_1_18:8296422-8376613:+|nuORF;ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT	nc|ENSG00000173482|P28827|PTPRM;ENSG00000196090|ENST00000373187|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	MULTI-SECPEP	A375_MHC_IP_R1	1	495.2002258300781	2	494.800552	987.58655	-0.53697	-0.00026569	0.037708	1.8658E-05	-0.49926	-0.00024703	494.800525526482	94.68	0.56126	94.68	94.446	95.007	0					21	10	3	0	0	0	0.01139	1	34801	34801		117.6	50.255	1	3988800			17678	8991;7802	12755	12850	17297	17297					0.09226056922420867
GLLGFVRQV	9	Unmodified	_GLLGFVRQV_					0	0	0		nc|ENSG00000173482|P28827|PTPRM;ENSG00000173482|ENST00000580170|PTPRM;FAM59A-PTPRM|2|fusion;FAM59A-PTPRM|1|fusion;ENST00000577827.5_1_18:8296422-8376613:+|nuORF;ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT	nc|ENSG00000173482|P28827|PTPRM;ENSG00000196090|ENST00000373187|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	MULTI-SECPEP	A375_MHC_IP_R2	2	495.15625	2	494.800552	987.58655	-0.33866	-0.00016757	-0.32165	-0.00015915	-0.66031	-0.00032672	494.8003740292527	93.592	0.507	94.337	94.109	94.616	0.74474					19	9	3	0	0	0	0.1277	1	35576	35576		46.021	13.715	1	3844700			17679	8991;7802	12755	12850	17298	17298					0.09226056922420867
GLLGNVAEV	9	Unmodified	_GLLGNVAEV_					0	0	0		ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant;ENSG00000160445|ENST00000291900|ZER1	ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant	ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	436.64764404296875	2	436.247818	870.481082	-0.16802	-7.3298E-05	0.34312	0.00014968	0.1751	7.6385E-05	436.24793123582015	95.993	0.91475	95.993	95.614	96.529	0					49	17	4	0	0	0	0.010057	2	35229	35229;35431		125.62	28.55	1	45978000			17680	6421	12756	12851	17299;17300	17299					0.04066096006135922
GLLGNVAEV	9	Unmodified	_GLLGNVAEV_					0	0	0		ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant;ENSG00000160445|ENST00000291900|ZER1	ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant	ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	871.8867797851562	1	871.488359	870.481082	-0.2968	-0.00025866	0.32543	0.00028361	0.02863	2.4951E-05	871.4886218286446	95.975	1.5215	95.975	95.565	97.086	0					72	29	4	0	0	0	0.070818	1	35562	35562		56.177	5.322	1	137130000			17681	6421	12756	12851	17301	17301					0.04066096006135922
GLLGNVAEV	9	Unmodified	_GLLGNVAEV_					0	0	0		ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant;ENSG00000160445|ENST00000291900|ZER1	ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant	ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	436.6474914550781	2	436.247818	870.481082	-0.027391	-1.1949E-05	0.062828	2.7408E-05	0.035437	1.5459E-05	436.24781439875363	95.093	1.1695	95.844	95.483	96.653	0.75044					56	22	4	0	0	0	0.010057	2	36063	36063;36270		125.62	40.353	1	49903000			17682	6421	12756	12851	17302;17303	17302					0.04066096006135922
GLLGNVAEV	9	Unmodified	_GLLGNVAEV_					0	0	0		ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant;ENSG00000160445|ENST00000291900|ZER1	ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant	ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	873.4368286132812	1	871.488359	870.481082	-0.31192	-0.00027183	0.18833	0.00016413	-0.12359	-0.0001077	871.4885069619852	95.111	1.5249	95.862	95.432	96.957	0.75045					69	29	4	0	0	0	0.042197	1	36132	36132		67.344	18.998	1	131780000			17683	6421	12756	12851	17304	17304					0.04066096006135922
GLLGSLGPVP	10	Unmodified	_GLLGSLGPVP_					0	0	0		ENSG00000106785|ENST00000341469|TRIM14;nc|ENSG00000106785|Q14142-3|TRIM14	ENSG00000106785|ENST00000341469|TRIM14	ENSG00000106785|ENST00000341469|TRIM14	MULTI-MSMS	A375_MHC_IP_R1	1	455.674072265625	2	455.273835	908.533118	-0.25668	-0.00011686	1.4824	0.0006749	1.2257	0.00055805	455.27408799189135	59.256	0.50811	59.256	58.99	59.498	0					21	9	4	0	0	0	0.62155	1	21347	21347		19.257	1.1106	1	1917400			17684	2712	12757	12852	17305	17305					0.07519259419893842
GLLGTLVQL	9	Unmodified	_GLLGTLVQL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	A375_MHC_IP_R2	2	913.9725341796875	1	913.571694	912.564418	-0.35248	-0.00032202	-0.0016799	-1.5347E-06	-0.35416	-0.00032355	913.5716717163991	131.07	0.50883	131.29	131.11	131.62	0.2142					22	9	4	0	0	0	0.0022058	1	51549	51549		142.08	18.629	1	204140000			17685	7257	12758	12853	17306	17306					0.10463832454001931
GLLGVTQQL	9	Unmodified	_GLLGVTQQL_					0	0	0		nc|ENSG00000196821|Q9H6K1-2|ILRUN;ENSG00000196821|ENST00000374023|ILRUN	nc|ENSG00000196821|Q9H6K1-2|ILRUN	nc|ENSG00000196821|Q9H6K1-2|ILRUN	MULTI-MSMS	A375_MHC_IP_R1	1	465.1765441894531	2	464.776742	927.538931	-0.19313	-8.9764E-05	-0.11423	-5.309E-05	-0.30736	-0.00014285	464.7765934206491	100.8	0.45499	100.8	100.53	100.99	0					12	8	2	0	0	0	0.0014061	1	37067	37067		149.99	45.195	1	1588100			17686	9087	12759	12854	17307	17307					0.07226357931563143
GLLGVTQQL	9	Unmodified	_GLLGVTQQL_					0	0	0		nc|ENSG00000196821|Q9H6K1-2|ILRUN;ENSG00000196821|ENST00000374023|ILRUN	nc|ENSG00000196821|Q9H6K1-2|ILRUN	nc|ENSG00000196821|Q9H6K1-2|ILRUN	MULTI-SECPEP	A375_MHC_IP_R2	2	465.1768493652344	2	464.776742	927.538931	-0.37723	-0.00017533	0.50844	0.00023631	0.13121	6.0983E-05	464.77689703065835	99.858	0.50727	100.62	100.42	100.93	0.76278					20	9	3	0	0	0	0.011358	1	37890	37890		108	26.384	1	1843000			17687	9087	12759	12854	17308	17308					0.07226357931563143
GLLGYLHFV	9	Unmodified	_GLLGYLHFV_					0	0	0		PIGH|p.K84M|1|0.22|ENSG00000100564|chr14:67593882-67593882|T/A|missense_variant;ENSG00000100564|ENST00000216452|PIGH	PIGH|p.K84M|1|0.22|ENSG00000100564|chr14:67593882-67593882|T/A|missense_variant	PIGH|p.K84M|1|0.22|ENSG00000100564|chr14:67593882-67593882|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	510.1888732910156	2	509.789653	1017.56475	-0.29497	-0.00015037	-0.46743	-0.00023829	-0.7624	-0.00038867	510.2908994029111	125.88	0.25056	125.88	125.8	126.05	0					7	4	2	0	0	0	0.024178	1	48032	48032		79.935	39.985	1	16869000			17688	2191	12760	12855	17309	17309					0.056672521738505566
GLLHEFRKGNA	11	Unmodified	_GLLHEFRKGNA_					0	0	0		ENSG00000249853|ENST00000312719|HS3ST5	ENSG00000249853|ENST00000312719|HS3ST5	ENSG00000249853|ENST00000312719|HS3ST5	MULTI-SECPEP	A375_MHC_IP_R2	2	415.27154541015625	3	414.563161	1240.66765	0.048029	1.9911E-05	-0.28171	-0.00011679	-0.23368	-9.6877E-05	414.56288572987677	41.959	0.30662	42.734	42.555	42.862	0.77451					9	5	2	0	0	0	0.98782	1	15642	15642		11.631	4.1543	1	1174400			17689	9842	12761	12856	17310	17310					0.05694712894546683
GLLIGTTGV	9	Unmodified	_GLLIGTTGV_					0	0	0		ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	MULTI-SECPEP	A375_MHC_IP_R1	1	829.9866333007812	1	830.498195	829.490919	-0.30686	-0.00025484	0.38263	0.00031777	0.075774	6.293E-05	830.4984502490698	97.975	1.4762	97.975	97.59	99.067	0					72	28	4	0	0	0	0.00080018	1	35952	35952		161.89	38.798	1	91844000			17690	7530	12762	12857	17311	17311					0.06935284011524345
GLLIGTTGV	9	Unmodified	_GLLIGTTGV_					0	0	0		ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	MULTI-MATCH	A375_MHC_IP_R2	2		1	830.498195	829.490919	-0.95931	-0.00079671	0.23885	0.00019837	-0.72046	-0.00059834	830.4983386733757	97.04	1.2686	97.796	97.419	98.687	0.75586	-0.089209	-5.8707E-05	NaN	161.89	66	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95730000			17691	7530	12762	12857							0.06935284011524345
GLLLAIHLCLF	11	Unmodified	_GLLLAIHLCLF_					0	0	0		ENST00000535009.5_1_11:68816453-68846494:+|nuORF;ENST00000442692.2_1_11:68822646-68853210:+|nuORF;ENSG00000162341|ENST00000294309|TPCN2	ENST00000535009.5_1_11:68816453-68846494:+|nuORF	ENST00000535009.5_1_11:68816453-68846494:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	404.28753662109375	3	404.910622	1211.71004	-0.33958	-0.0001375	0.011305	4.5774E-06	-0.32827	-0.00013292	404.9107435665241	28.287	0.25331	28.966	28.858	29.112	0.67857					6	4	2	0	0	0	0.99805	1	9709	9709		1.4551	0.75745	1	856840			17692	6519	12763	12858	17312	17312					0.11264971978516769
GLLLKPLLP	9	Unmodified	_GLLLKPLLP_					0	0	0		ENST00000549380.1_1_12:56551408-56551507:+|nuORF	ENST00000549380.1_1_12:56551408-56551507:+|nuORF	ENST00000549380.1_1_12:56551408-56551507:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	963.669921875	1	963.660116	962.652839	-0.12856	-0.00012389	-4.186	-0.0040339	-4.3146	-0.0041578	963.6571816693836	130.42	0.86462	130.42	129.95	130.82	0					20	16	2	0	0	0	0.75251	1	50167	50167		2.3027	0	1	13733000			17693	13359	12764	12859	17313	17313					0.17001872764456039
GLLNNIAEV	9	Unmodified	_GLLNNIAEV_					0	0	0		ENSG00000162378|ENST00000294353|ZYG11B;nc|ENSG00000203995|Q6WRX3-2|ZYG11A;ENSG00000203995|ENST00000371528|ZYG11A	ENSG00000162378|ENST00000294353|ZYG11B;nc|ENSG00000203995|Q6WRX3-2|ZYG11A	ENSG00000162378|ENST00000294353|ZYG11B	MULTI-MSMS	A375_MHC_IP_R1	1	472.1658020019531	2	471.766374	941.518196	-0.164	-7.7371E-05	-0.10416	-4.9137E-05	-0.26816	-0.00012651	471.76634092782206	108	1.5292	108	106.98	108.51	0					67	29	3	0	0	0	0.0098824	1	39672	39672		117.6	17.227	1	9881600			17694	6522;9404	12765	12860	17314	17314					0.045097675518945834
GLLNRPNPLL	10	Unmodified	_GLLNRPNPLL_					0	0	0		ENSG00000177666|ENST00000336615|PNPLA2;STIM1-PNPLA2|1|fusion	ENSG00000177666|ENST00000336615|PNPLA2	ENSG00000177666|ENST00000336615|PNPLA2	MULTI-MSMS	A375_MHC_IP_R1	1	554.2373046875	2	553.837665	1105.66078	-0.74241	-0.00041117	0.28431	0.00015746	-0.4581	-0.00025371	553.8376468176812	84.316	0.65773	84.316	83.989	84.647	0					19	12	2	0	0	0	0.19726	1	30905	30905		68.081	35.295	1	2602500			17695	8099	12766	12861	17315	17315					0.11217400013947554
GLLNRPNPLL	10	Unmodified	_GLLNRPNPLL_					0	0	0		ENSG00000177666|ENST00000336615|PNPLA2;STIM1-PNPLA2|1|fusion	ENSG00000177666|ENST00000336615|PNPLA2	ENSG00000177666|ENST00000336615|PNPLA2	MULTI-MSMS	A375_MHC_IP_R2	2	554.2374877929688	2	553.837665	1105.66078	-0.74909	-0.00041487	0.11594	6.4212E-05	-0.63315	-0.00035066	553.8376740594109	83.263	0.45678	84.003	83.797	84.254	0.73962					14	8	2	0	0	0	0.14143	1	31683	31683		74.929	34.979	1	1753400			17696	8099	12766	12861	17316	17316					0.11217400013947554
GLLPDVPSL	9	Unmodified	_GLLPDVPSL_					0	0	0		nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7;ENSG00000125505|ENST00000245615|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-MSMS	A375_MHC_IP_R1	1	456.16534423828125	2	455.765843	909.517133	-0.018148	-8.2714E-06	-1.2777	-0.00058233	-1.2958	-0.0005906	455.7651216317045	127.95	0.55688	127.95	127.77	128.33	0					21	10	3	0	0	0	0.001809	1	49091	49091		146.01	53.185	1	59973000			17697	3971	12767	12862	17317	17317					0.05875553183000193
GLLPDVPSL	9	Unmodified	_GLLPDVPSL_					0	0	0		nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7;ENSG00000125505|ENST00000245615|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-MSMS	A375_MHC_IP_R2	2	456.1651611328125	2	455.765843	909.517133	-0.26116	-0.00011903	0.8119	0.00037003	0.55073	0.00025101	455.76615923710574	127.63	0.30383	127.9	127.77	128.07	0.26592					12	5	3	0	0	0	0.0048376	1	50085	50085		161.89	69.072	1	37952000			17698	3971	12767	12862	17318	17318					0.05875553183000193
GLLPDVPSL	9	Unmodified	_GLLPDVPSL_					0	0	0		nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7;ENSG00000125505|ENST00000245615|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-SECPEP	A375_MHC_IP_R2	2	910.9286499023438	1	910.52441	909.517133	-0.41232	-0.00037543	1.2696	0.001156	0.85731	0.0007806	910.5254918576296	127.66	0.86289	127.92	127.66	128.53	0.26593					41	16	4	0	0	0	0.0038591	1	50052	50052		154.46	57.389	1	716060000			17699	3971	12767	12862	17319	17319					0.05875553183000193
GLLPHRVRF	9	Unmodified	_GLLPHRVRF_					0	0	0			REV__ENST00000494718.5_1_X:51641614-51641740:+|nuORF	REV__ENST00000494718.5_1_X:51641614-51641740:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	366.2784729003906	3	365.55757	1093.65088	0.31859	0.00011646	0.034992	1.2791E-05	0.35358	0.00012925	365.5575104717494	51.176	0.50768	51.176	51.017	51.525	0					14	9	2	0	0	0	0.77244	1	18140	18140		2.9952	2.9952	1	1830600	+		17700	25440	12768	12863	17320	17320					0.10780256799216659
GLLPKLTAL	9	Unmodified	_GLLPKLTAL_					0	0	0		nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-2|KIFAP3	nc|ENSG00000075945|Q92845-2|KIFAP3	MULTI-MSMS	A375_MHC_IP_R1	1	463.7078857421875	2	463.307678	924.600803	-0.18835	-8.7264E-05	0.49887	0.00023113	0.31052	0.00014387	463.30785286596006	102.74	0.76211	102.74	102.45	103.22	0					32	14	3	0	0	0	0.033557	1	37747	37747		71.922	13.243	1	3629900			17701	1626	12769	12864	17321	17321					0.13548709350698118
GLLPKLTAL	9	Unmodified	_GLLPKLTAL_					0	0	0		nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-2|KIFAP3	nc|ENSG00000075945|Q92845-2|KIFAP3	MULTI-MSMS	A375_MHC_IP_R2	2	463.7073669433594	2	463.307678	924.600803	-0.48888	-0.0002265	0.31683	0.00014679	-0.17205	-7.9711E-05	463.30777112471776	101.77	0.76067	102.53	102.16	102.92	0.76428					32	14	3	0	0	0	0.021889	1	38518	38518		81.89	13.809	1	5016200			17702	1626	12769	12864	17322	17322					0.13548709350698118
GLLPQLLGV	9	Unmodified	_GLLPQLLGV_					0	0	0		ENST00000484495.5_1_7:95799231-95818686:-|nuORF;ENSG00000004864|ENST00000265631|SLC25A13;nc|ENSG00000004864|Q9UJS0-2|SLC25A13	ENST00000484495.5_1_7:95799231-95818686:-|nuORF	ENST00000484495.5_1_7:95799231-95818686:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	908.8265991210938	1	909.57678	908.569503	-0.36901	-0.00033564	-0.25565	-0.00023253	-0.62466	-0.00056818	909.5764927867292	131.68	0.15166	131.68	131.58	131.73	0					4	2	2	0	0	0	0.28475	1	50757	50757		25.399	0	1	3081600			17703	874	12770	12865	17323	17323					0.11156136316617449
GLLPSAPPLF	10	Unmodified	_GLLPSAPPLF_					0	0	0		ENST00000262519.13_2_16:30968803-30969046:+|nuORF	ENST00000262519.13_2_16:30968803-30969046:+|nuORF	ENST00000262519.13_2_16:30968803-30969046:+|nuORF	MSMS	A375_MHC_IP_R1	1	506.3192443847656	2	506.29731	1010.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.109	1	83.109	82.609	83.609	0								0	0	0	0.15283	1	30404	30404		11.64	2.2572	1				17704	10307	12771	12866	17324	17324					0.07520118971046941
GLLRALRKLRV	11	Unmodified	_GLLRALRKLRV_					0	0	0			REV__ENST00000296181.8_1_3:124482375-124482486:-|nuORF	REV__ENST00000296181.8_1_3:124482375-124482486:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1294.1705322265625	1	1294.87938	1293.87211	0.2647	0.00034275	-3.7639	-0.0048738	-3.4992	-0.004531	1295.8765532488376	130.53	0.25403	130.75	130.55	130.81	0.21419					6	4	2	0	0	0	1.0007	1	51329	51329		1.4819	0	1	11168000	+		17705	23385	12772	12867	17325	17325					0.2369269677567445
GLLRALRKLRV	11	Unmodified	_GLLRALRKLRV_					0	0	0			REV__ENST00000296181.8_1_3:124482375-124482486:-|nuORF	REV__ENST00000296181.8_1_3:124482375-124482486:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	1294.87938	1293.87211	-0.23558	-0.00030504	1.4035	0.0018174	1.168	0.0015124	1294.8806153663256	130.74	0.20267	130.74	130.62	130.82	0	-0.0024355	0.00049306	NaN	1.4819	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26799000	+		17706	23385	12772	12867							0.2369269677567445
GLLRKLLRH	9	Unmodified	_GLLRKLLRH_					0	0	0			REV__nc|ENSG00000156222|O00337-2|SLC28A1	REV__nc|ENSG00000156222|O00337-2|SLC28A1	MULTI-SECPEP	A375_MHC_IP_R1	1	1105.2244873046875	1	1105.73166	1104.72438	-0.56315	-0.0006227	2.6809	0.0029643	2.1177	0.0023416	1105.7383452577994	123.56	0.20187	123.56	123.44	123.64	0					5	3	2	0	0	0	0.79683	1	46234	46234		0.6015	0	1	10761000	+		17707	19969	12773	12868	17326	17326					0.176208052416996
GLLSIFTKV	9	Unmodified	_GLLSIFTKV_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	A375_MHC_IP_R1	1	489.7047424316406	2	489.305136	976.595718	-0.73808	-0.00036114	0.10996	5.3804E-05	-0.62812	-0.00030734	489.30504284436046	122.03	0.45662	122.03	121.82	122.28	0					15	8	2	0	0	0	0.015356	1	45436	45436		89.401	38.546	1	13758000			17708	3357	12774	12869	17327	17327					0.10648405488097978
GLLSRLGAA	9	Unmodified	_GLLSRLGAA_					0	0	0		nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;ITGA6|p.F99Lfs*31|1|0.34|ENSG00000091409|chr2:172465651-172465651|T/-|frameshift_variant	nc|ENSG00000091409|P23229-4|ITGA6	nc|ENSG00000091409|P23229-4|ITGA6	MULTI-MSMS	A375_MHC_IP_R1	1	429.6636962890625	2	429.263802	856.513051	-0.27179	-0.00011667	0.45382	0.00019481	0.18203	7.814E-05	429.26381136900545	65.607	0.40828	65.607	65.411	65.819	0					10	7	2	0	0	0	0.14858	1	23784	23784		41.956	5.8285	1	1420600			17709	14499	12775	12870	17328	17328					0.0790550847995064
GLLSRLGAA	9	Unmodified	_GLLSRLGAA_					0	0	0		nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;ITGA6|p.F99Lfs*31|1|0.34|ENSG00000091409|chr2:172465651-172465651|T/-|frameshift_variant	nc|ENSG00000091409|P23229-4|ITGA6	nc|ENSG00000091409|P23229-4|ITGA6	MULTI-MATCH	A375_MHC_IP_R2	2		2	429.263802	856.513051	-0.16013	-6.874E-05	0.23809	0.0001022	0.077957	3.3464E-05	429.26381519949035	64.579	0.45831	65.32	65.106	65.564	0.74023	-0.14395	-8.6478E-05	NaN	41.956	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1157800			17710	14499	12775	12870							0.0790550847995064
GLLSRPHR	8	Unmodified	_GLLSRPHR_					0	0	0		ENST00000554567.1_2_14:56046961-56101257:+|nuORF	ENST00000554567.1_2_14:56046961-56101257:+|nuORF	ENST00000554567.1_2_14:56046961-56101257:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	468.6804504394531	2	468.280318	934.546083	-0.53988	-0.00025282	0.56354	0.0002639	0.023661	1.108E-05	468.28053259654814	131.3	0.50421	131.3	131.18	131.68	0					14	9	3	0	0	0	0.5503	1	50638	50638		46.921	46.921	1	16597000			17711	13421	12776	12871	17329	17329					0.07619135322659076
GLLTEIRAV	9	Unmodified	_GLLTEIRAV_					0	0	0		ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	MULTI-MSMS	A375_MHC_IP_R1	1	486.6974182128906	2	486.297842	970.581131	-0.45099	-0.00021932	0.041773	2.0314E-05	-0.40922	-0.000199	486.2977968711615	85.286	0.66117	85.286	85.056	85.717	0					39	12	4	0	0	0	0.0090297	1	31218	31218		99.755	48.125	1	21000000			17712	6849	12777	12872	17330	17330					0.09466333339946686
GLLTEIRAV	9	Unmodified	_GLLTEIRAV_					0	0	0		ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	MULTI-MSMS	A375_MHC_IP_R2	2	486.69744873046875	2	486.297842	970.581131	-0.51517	-0.00025052	0.016755	8.1477E-06	-0.49841	-0.00024238	486.29778943545847	84.272	0.86456	85.012	84.611	85.476	0.73962					44	16	4	0	0	0	0.0096896	1	31986	31986		110.67	54.498	1	21610000			17713	6849	12777	12872	17331	17331					0.09466333339946686
GLLTSVDAVPL	11	Unmodified	_GLLTSVDAVPL_					0	0	0			REV__UMODL1|p.T698Hfs*71|1|0.44|ENSG00000177398|chr21:42111697-42111698|-/C|frameshift_variant	REV__UMODL1|p.T698Hfs*71|1|0.44|ENSG00000177398|chr21:42111697-42111698|-/C|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	543.1980590820312	2	542.816064	1083.61758	-0.76324	-0.0004143	0.96805	0.00052547	0.20481	0.00011117	542.8166099521881	63.68	0.66105	64.42	64.038	64.699	0.74022					30	12	3	0	0	0	0.98069	1	24090	24090		8.7454	0	1	10492000	+		17714	21454	12778	12873	17332	17332					0.07911165445989354
GLLWYIVP	8	Unmodified	_GLLWYIVP_					0	0	0		ENST00000563874.5_2_16:28493782-28493962:-|nuORF;nc|ENSG00000261832|Q13286-5|CLN3;ENST00000565140.5_3_16:28489128-28499933:-|nuORF;ENST00000564574.5_2_16:28493646-28503072:-|nuORF;nc|ENSG00000261832|Q13286-4|CLN3;nc|ENSG00000261832|Q13286-6|CLN3;nc|ENSG00000261832|Q13286-2|CLN3;nc|ENSG00000261832|Q13286-7|CLN3;ENSG00000188603|ENST00000636147|CLN3	ENST00000563874.5_2_16:28493782-28493962:-|nuORF	ENST00000563874.5_2_16:28493782-28493962:-|nuORF	MSMS	A375_MHC_IP_R2	2	480.6952209472656	2	480.781296	959.54804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.92	1	132.11	131.61	132.61	0.18953								0	0	0	0.16876	1	51893	51893		2.8892	0.31174	1				17715	8917	12779	12874	17333	17333					0.06664751287894433
GLLYKVLGV	9	Unmodified	_GLLYKVLGV_					0	0	0		ENST00000497209.5_1_20:61299742-61303242:+|nuORF;nc|ENSG00000101187|Q96BD0-2|SLCO4A1;SLCO4A1|p.S693*|1|0.27|ENSG00000101187|chr20:62671802-62671812|CGGAGTCTTCA/-|frameshift_variant;nc|ENSG00000101187|Q96BD0-4|SLCO4A1;ENSG00000101187|ENST00000217159|SLCO4A1	ENST00000497209.5_1_20:61299742-61303242:+|nuORF	ENST00000497209.5_1_20:61299742-61303242:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	481.707763671875	2	481.307678	960.600803	-0.20562	-9.8965E-05	0.32313	0.00015552	0.11751	5.6558E-05	481.30777607530365	106.4	0.56373	106.4	106.16	106.73	0					17	10	3	0	0	0	0.067501	1	39082	39082		57.471	28.985	1	2059500			17716	2264	12780	12875	17334	17334					0.11892709350718178
GLLYKVLGV	9	Unmodified	_GLLYKVLGV_					0	0	0		ENST00000497209.5_1_20:61299742-61303242:+|nuORF;nc|ENSG00000101187|Q96BD0-2|SLCO4A1;SLCO4A1|p.S693*|1|0.27|ENSG00000101187|chr20:62671802-62671812|CGGAGTCTTCA/-|frameshift_variant;nc|ENSG00000101187|Q96BD0-4|SLCO4A1;ENSG00000101187|ENST00000217159|SLCO4A1	ENST00000497209.5_1_20:61299742-61303242:+|nuORF	ENST00000497209.5_1_20:61299742-61303242:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	481.307678	960.600803	-0.53358	-0.00025681	0.18909	9.1011E-05	-0.34449	-0.0001658	481.3078261746177	105.28	0.45719	106.05	105.82	106.28	0.76308	-0.17389	-8.1397E-05	NaN	57.471	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1269600			17717	2264	12780	12875							0.11892709350718178
GLLYRDPLPMW	11	Unmodified	_GLLYRDPLPMW_					0	0	0		ENST00000479412.2_1_1:120611949-120612105:-|nuORF;ENST00000362074.7_1_1:145209278-145248834:+|nuORF;ENST00000256646.6_1_1:120572588-120612105:-|nuORF	ENST00000479412.2_1_1:120611949-120612105:-|nuORF	ENST00000479412.2_1_1:120611949-120612105:-|nuORF	MSMS	A375_MHC_IP_R2	2	680.9689331054688	2	680.857741	1359.70093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.754	1	83.497	82.997	83.997	0.74293								0	0	0	0.1623	1	31438	31438		6.7232	0.09279	1				17718	10241	12781	12876	17335	17335					0.03546578622172092
GLMAQTPSL	9	Unmodified	_GLMAQTPSL_					0	0	0		ENST00000599791.1_1_19:49952679-49954831:-|nuORF;nc|ENSG00000104872|Q9NWS0-2|PIH1D1	ENST00000599791.1_1_19:49952679-49954831:-|nuORF	ENST00000599791.1_1_19:49952679-49954831:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	459.6402282714844	2	459.241678	916.468803	-0.55772	-0.00025613	-1.6359	-0.00075127	-2.1936	-0.0010074	459.2403323541351	67.377	0.71469	67.377	66.99	67.704	0					17	13	3	0	0	0	0.75466	1	24447	24447		1.8442	1.1539	1	1135900			17719	13862	12782	12877	17336	17336					0.0072273627146159924
GLMEDLLKL	9	Unmodified	_GLMEDLLKL_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.K1434Nfs*14|1|0.29|ENSG00000153207|chr1:246855808-246855809|AC/-|frameshift_variant;ENST00000470300.5_1_1:247027247-247061635:-|nuORF;ENST00000420969.1_1_2:162360026-162361742:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MSMS	A375_MHC_IP_R1	1	1031.6463623046875	1	1031.58054	1030.57327	0.1661	0.00017135	-1.0551	-0.0010884	-0.88902	-0.0009171	1031.5799927115875	128.83	0.25555	128.83	128.63	128.89	0					7	4	2	0	0	0	0.066859	1	49466	49466		57.722	12.022	1	4134500			17720	6016	12783	12878	17337	17337					0.05920438028147146
GLMEDLLKL	9	Unmodified	_GLMEDLLKL_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.K1434Nfs*14|1|0.29|ENSG00000153207|chr1:246855808-246855809|AC/-|frameshift_variant;ENST00000470300.5_1_1:247027247-247061635:-|nuORF;ENST00000420969.1_1_2:162360026-162361742:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MSMS	A375_MHC_IP_R1	1	516.6937866210938	2	516.293911	1030.57327	-0.53775	-0.00027764	-0.48936	-0.00025265	-1.0271	-0.00053029	516.2935867943188	128.77	0.46057	128.77	128.63	129.09	0					19	8	4	0	0	0	0.0094639	1	49502	49502		106.94	31.179	1	20969000			17721	6016	12783	12878	17338	17338					0.05920438028147146
GLMEDLLKL	9	Unmodified	_GLMEDLLKL_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.K1434Nfs*14|1|0.29|ENSG00000153207|chr1:246855808-246855809|AC/-|frameshift_variant;ENST00000470300.5_1_1:247027247-247061635:-|nuORF;ENST00000420969.1_1_2:162360026-162361742:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-SECPEP	A375_MHC_IP_R2	2	516.6932373046875	2	516.293911	1030.57327	-0.83303	-0.00043009	-1.6131	-0.00083285	-2.4462	-0.0012629	516.2930965599311	128.51	0.30501	128.75	128.6	128.91	0.23946					10	5	2	0	0	0	0.046478	1	50484	50484		82.529	14.449	1	18587000			17722	6016	12783	12878	17339	17339					0.05920438028147146
GLMEVNPEL	9	Unmodified	_GLMEVNPEL_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;ENST00000393747.3_1_11:70269077-70281851:+|nuORF;ENST00000346329.7_1_11:70281557-70281851:+|nuORF	nc|ENSG00000085733|Q14247-2|CTTN;ENST00000346329.7_1_11:70281557-70281851:+|nuORF	nc|ENSG00000085733|Q14247-2|CTTN	MULTI-SECPEP	A375_MHC_IP_R1	1	501.6524353027344	2	501.252243	1000.48993	-0.33615	-0.00016849	1.2857	0.00064448	0.94959	0.00047598	501.25282354716575	98.344	0.65929	98.344	97.948	98.607	0					25	12	3	0	0	0	0.14572	1	36135	36135		62.573	22.623	1	1844400			17723	14491;10911	12784	12879	17340	17340					-0.010292984196894395
GLMEVNPEL	9	Unmodified	_GLMEVNPEL_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;ENST00000393747.3_1_11:70269077-70281851:+|nuORF;ENST00000346329.7_1_11:70281557-70281851:+|nuORF	nc|ENSG00000085733|Q14247-2|CTTN;ENST00000346329.7_1_11:70281557-70281851:+|nuORF	nc|ENSG00000085733|Q14247-2|CTTN	MULTI-SECPEP	A375_MHC_IP_R2	2	501.6523132324219	2	501.252243	1000.48993	-0.73354	-0.00036769	1.1019	0.00055234	0.36839	0.00018466	501.25259603376946	97.544	0.66142	98.3	97.923	98.585	0.75586					29	12	3	0	0	0	0.14572	1	37030	37030		62.573	26.528	1	1798200			17724	14491;10911	12784	12879	17341	17341					-0.010292984196894395
GLMGIIQRA	9	Unmodified	_GLMGIIQRA_					0	0	0		ENSG00000138678|ENST00000264409|GPAT3;ENST00000513683.1_1_4:84509414-84516114:+|nuORF	ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	MSMS	A375_MHC_IP_R1	1	479.8206481933594	2	479.778762	957.542971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.569	1	75.569	75.069	76.069	0								0	0	0	0.14851	1	27532	27532		24.021	9.1823	1				17725	5021	12785	12880	17342	17342					0.06250124153632441
GLMKDIVGA	9	Unmodified	_GLMKDIVGA_					0	0	0		ENSG00000115919|ENST00000264170|KYNU;ENST00000460143.1_1_2:143676251-143715440:+|nuORF;nc|ENSG00000115919|Q16719-2|KYNU	ENSG00000115919|ENST00000264170|KYNU	ENSG00000115919|ENST00000264170|KYNU	MULTI-MSMS	A375_MHC_IP_R1	1	452.6520690917969	2	452.252046	902.489538	-0.38387	-0.00017361	-0.29836	-0.00013494	-0.68223	-0.00030854	452.2517740396752	66.503	1.0673	66.503	65.768	66.836	0					35	20	3	0	0	0	0.029064	1	24051	24051		75.761	14.403	1	5594600			17726	3350	12786	12881	17343	17343					0.034393266511074216
GLMKDIVGA	9	Unmodified	_GLMKDIVGA_					0	0	0		ENSG00000115919|ENST00000264170|KYNU;ENST00000460143.1_1_2:143676251-143715440:+|nuORF;nc|ENSG00000115919|Q16719-2|KYNU	ENSG00000115919|ENST00000264170|KYNU	ENSG00000115919|ENST00000264170|KYNU	MULTI-MSMS	A375_MHC_IP_R2	2	452.65191650390625	2	452.252046	902.489538	-0.39909	-0.00018049	-0.27976	-0.00012652	-0.67885	-0.00030701	452.2518590629447	65.459	0.96478	66.197	65.664	66.629	0.73811					35	18	3	0	0	0	0.029064	1	24800	24800		75.761	20.987	1	7846100			17727	3350	12786	12881	17344	17344					0.034393266511074216
GLMKDIVGA	9	Oxidation (M)	_GLM(Oxidation (M))KDIVGA_		GLM(1)KDIVGA		GLM(58)KDIVGA	0	0	1		ENSG00000115919|ENST00000264170|KYNU;ENST00000460143.1_1_2:143676251-143715440:+|nuORF;nc|ENSG00000115919|Q16719-2|KYNU	ENSG00000115919|ENST00000264170|KYNU	ENSG00000115919|ENST00000264170|KYNU	MULTI-SECPEP	A375_MHC_IP_R1	1	460.6492614746094	2	460.249503	918.484453	-0.16834	-7.7481E-05	0.13198	6.0743E-05	-0.036367	-1.6738E-05	460.2495594914222	37.633	0.51087	37.633	37.351	37.862	0					21	9	3	0	0	0	0.13208	1	12706	12706		57.722	19.748	1	6298900			17728	3350	12786	12882	17345	17345		163			0.021950227884985907
GLMKDIVGA	9	Oxidation (M)	_GLM(Oxidation (M))KDIVGA_		GLM(1)KDIVGA		GLM(58)KDIVGA	0	0	1		ENSG00000115919|ENST00000264170|KYNU;ENST00000460143.1_1_2:143676251-143715440:+|nuORF;nc|ENSG00000115919|Q16719-2|KYNU	ENSG00000115919|ENST00000264170|KYNU	ENSG00000115919|ENST00000264170|KYNU	MULTI-MSMS	A375_MHC_IP_R2	2	460.64898681640625	2	460.249503	918.484453	-0.97368	-0.00044813	0.28157	0.00012959	-0.6921	-0.00031854	460.24959638422166	36.8	0.50803	37.571	37.308	37.816	0.7709					18	9	3	0	0	0	0.066859	1	13435	13435		57.722	19.748	1	5707700			17729	3350	12786	12882	17346	17346		163			0.021950227884985907
GLMKDIVGA	9	Oxidation (M)	_GLM(Oxidation (M))KDIVGA_		GLM(1)KDIVGA		GLM(66)KDIVGA	0	0	1		ENSG00000115919|ENST00000264170|KYNU;ENST00000460143.1_1_2:143676251-143715440:+|nuORF;nc|ENSG00000115919|Q16719-2|KYNU	ENSG00000115919|ENST00000264170|KYNU	ENSG00000115919|ENST00000264170|KYNU	MULTI-SECPEP	A375_MHC_IP_R2	2	460.64892578125	2	460.249503	918.484453	-0.53956	-0.00024833	-0.010302	-4.7414E-06	-0.54986	-0.00025307	460.24947106848384	36.208	0.40849	36.979	36.749	37.157	0.7709					14	7	2	0	0	0	0.087712	1	13164	13164		66.457	20.436	1	6750700			17730	3350	12786	12882	17347	17347		163			0.021950227884985907
GLMKKAYEL	9	Unmodified	_GLMKKAYEL_					0	0	0		ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D;nc|ENSG00000068305|Q02078-6|MEF2A;nc|ENSG00000068305|Q02078|MEF2A;ENSG00000068305|ENST00000557942|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A;ENST00000559036.5_1_15:100173318-100185981:+|nuORF;nc|ENSG00000068305|Q02078-3|MEF2A;ENST00000558983.5_1_15:100173318-100211695:+|nuORF;ENSG00000081189|ENST00000504921|MEF2C;nc|ENSG00000081189|Q06413-2|MEF2C;nc|ENSG00000081189|Q06413-3|MEF2C;nc|ENSG00000081189|Q06413-4|MEF2C;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000213999|Q02080|MEF2B;ENSG00000213999|ENST00000424583|MEF2B;nc|ENSG00000081189|Q06413-6|MEF2C;nc|ENSG00000081189|Q06413-5|MEF2C	ENSG00000116604|ENST00000348159|MEF2D;ENSG00000213999|ENST00000424583|MEF2B;nc|ENSG00000081189|Q06413-6|MEF2C	ENSG00000116604|ENST00000348159|MEF2D	MULTI-MSMS	A375_MHC_IP_R1	1	526.6613159179688	2	526.794078	1051.5736	-0.77514	-0.00040834	-0.17889	-9.424E-05	-0.95403	-0.00050258	526.7940519922682	41.7	0.40896	41.7	41.419	41.828	0					12	7	2	0	0	0	0.46465	1	14433	14433		21.537	0	1	2832800			17731	3410;14490;9596	12787	12883	17348	17348					0.049878577480058084
GLMKKAYEL	9	Unmodified	_GLMKKAYEL_					0	0	0		ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D;nc|ENSG00000068305|Q02078-6|MEF2A;nc|ENSG00000068305|Q02078|MEF2A;ENSG00000068305|ENST00000557942|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A;ENST00000559036.5_1_15:100173318-100185981:+|nuORF;nc|ENSG00000068305|Q02078-3|MEF2A;ENST00000558983.5_1_15:100173318-100211695:+|nuORF;ENSG00000081189|ENST00000504921|MEF2C;nc|ENSG00000081189|Q06413-2|MEF2C;nc|ENSG00000081189|Q06413-3|MEF2C;nc|ENSG00000081189|Q06413-4|MEF2C;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000213999|Q02080|MEF2B;ENSG00000213999|ENST00000424583|MEF2B;nc|ENSG00000081189|Q06413-6|MEF2C;nc|ENSG00000081189|Q06413-5|MEF2C	ENSG00000116604|ENST00000348159|MEF2D;ENSG00000213999|ENST00000424583|MEF2B;nc|ENSG00000081189|Q06413-6|MEF2C	ENSG00000116604|ENST00000348159|MEF2D	MULTI-SECPEP	A375_MHC_IP_R2	2	351.93182373046875	3	351.531811	1051.5736	-0.39414	-0.00013855	0.41021	0.0001442	0.01607	5.649E-06	351.5318486505206	40.687	0.509	41.461	41.234	41.743	0.77451					20	9	3	0	0	0	0.69504	1	15081	15081		12.241	0	1	3974800			17732	3410;14490;9596	12787	12883	17349	17349					0.049878577480058084
GLMKKAYEL	9	Unmodified	_GLMKKAYEL_					0	0	0		ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D;nc|ENSG00000068305|Q02078-6|MEF2A;nc|ENSG00000068305|Q02078|MEF2A;ENSG00000068305|ENST00000557942|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A;ENST00000559036.5_1_15:100173318-100185981:+|nuORF;nc|ENSG00000068305|Q02078-3|MEF2A;ENST00000558983.5_1_15:100173318-100211695:+|nuORF;ENSG00000081189|ENST00000504921|MEF2C;nc|ENSG00000081189|Q06413-2|MEF2C;nc|ENSG00000081189|Q06413-3|MEF2C;nc|ENSG00000081189|Q06413-4|MEF2C;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000213999|Q02080|MEF2B;ENSG00000213999|ENST00000424583|MEF2B;nc|ENSG00000081189|Q06413-6|MEF2C;nc|ENSG00000081189|Q06413-5|MEF2C	ENSG00000116604|ENST00000348159|MEF2D;ENSG00000213999|ENST00000424583|MEF2B;nc|ENSG00000081189|Q06413-6|MEF2C	ENSG00000116604|ENST00000348159|MEF2D	MULTI-SECPEP	A375_MHC_IP_R2	2	527.1937255859375	2	526.794078	1051.5736	-0.60511	-0.00031877	-0.19175	-0.00010101	-0.79686	-0.00041978	526.7938845627299	40.676	0.40679	41.451	41.183	41.59	0.77451					13	7	2	0	0	0	0.24324	1	15093	15093		53.833	0	1	3229400			17733	3410;14490;9596	12787	12883	17350	17350					0.049878577480058084
GLMMKKPL	8	Unmodified	_GLMMKKPL_					0	0	0		ENST00000419197.6_1_11:117046715-117046757:+|nuORF	ENST00000419197.6_1_11:117046715-117046757:+|nuORF	ENST00000419197.6_1_11:117046715-117046757:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	459.6559753417969	2	459.269184	916.523815	-0.44593	-0.0002048	-0.64675	-0.00029703	-1.0927	-0.00050184	459.2688532718	39.419	0.40576	40.194	39.965	40.371	0.77451					12	7	2	0	0	0	0.972	1	14469	14469		0.69038	0.16561	1	6901000			17734	11716	12788	12884	17351	17351					0.06221451538362999
GLMRASQEKI	10	Unmodified	_GLMRASQEKI_					0	0	0			REV__ENSG00000198793|ENST00000361445|MTOR	REV__ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	A375_MHC_IP_R1	1	566.7054443359375	2	566.81079	1131.60703	-0.3164	-0.00017934	-3.6031	-0.0020423	-3.9195	-0.0022216	567.3098272543573	101.14	0.60799	101.14	100.84	101.45	0					23	11	3	0	0	0	0.87163	1	37251	37251		13.906	6.2971	1	1212400	+		17735	22419	12789	12885	17352	17352					0.04648859519920734
GLMVLVLLVLL	11	Unmodified	_GLMVLVLLVLL_					0	0	0			REV__ENST00000462116.5_1_1:155032691-155033592:+|nuORF	REV__ENST00000462116.5_1_1:155032691-155033592:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1182.184814453125	1	1182.78942	1181.78214	0.37655	0.00044538	-4.3897	-0.005192	-4.0131	-0.0047466	1183.7847691523573	114.38	0.15224	115.09	114.98	115.14	0.70985					4	2	2	0	0	0	0.99526	1	43108	43108		6.7232	3.1267	1	3403300	+		17736	19367	12790	12886	17353	17353					0.19851886332230606
GLNDFIQKI	9	Unmodified	_GLNDFIQKI_					0	0	0		SGK1|p.K224Nfs*7|1|0.2|ENSG00000118515|chr6:134172307-134172307|T/-|frameshift_variant;ENSG00000118515|ENST00000367858|SGK1;ENST00000474427.6_1_6:134495647-134495951:-|nuORF;ENST00000472859.2_1_6:134495091-134495791:-|nuORF;ENST00000530421.5_1_6:134495091-134495951:-|nuORF;ENST00000525700.1_1_6:134495091-134498975:-|nuORF;ENST00000532856.5_1_6:134494408-134495951:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF;ENST00000532021.5_1_6:134494408-134498975:-|nuORF;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-5|SGK1	SGK1|p.K224Nfs*7|1|0.2|ENSG00000118515|chr6:134172307-134172307|T/-|frameshift_variant	SGK1|p.K224Nfs*7|1|0.2|ENSG00000118515|chr6:134172307-134172307|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	524.7074584960938	2	524.295299	1046.57605	-0.40173	-0.00021063	0.14438	7.5696E-05	-0.25736	-0.00013493	524.2953731823395	97.414	1.2159	97.414	96.68	97.896	0					73	23	5	0	0	0	0.0098859	2	35885	35690;35885		117.76	57.687	1	86897000			17737	3549	12791	12887	17354;17355	17355					0.05462029477325814
GLNDFIQKI	9	Unmodified	_GLNDFIQKI_					0	0	0		SGK1|p.K224Nfs*7|1|0.2|ENSG00000118515|chr6:134172307-134172307|T/-|frameshift_variant;ENSG00000118515|ENST00000367858|SGK1;ENST00000474427.6_1_6:134495647-134495951:-|nuORF;ENST00000472859.2_1_6:134495091-134495791:-|nuORF;ENST00000530421.5_1_6:134495091-134495951:-|nuORF;ENST00000525700.1_1_6:134495091-134498975:-|nuORF;ENST00000532856.5_1_6:134494408-134495951:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF;ENST00000532021.5_1_6:134494408-134498975:-|nuORF;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-5|SGK1	SGK1|p.K224Nfs*7|1|0.2|ENSG00000118515|chr6:134172307-134172307|T/-|frameshift_variant	SGK1|p.K224Nfs*7|1|0.2|ENSG00000118515|chr6:134172307-134172307|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	524.29150390625	2	524.295299	1046.57605	-0.60739	-0.00031845	0.16368	8.5819E-05	-0.4437	-0.00023263	524.2954175138327	96.585	1.1641	97.341	96.658	97.822	0.75586					69	22	5	0	0	0	0.0012247	2	36611	36611;36762		195.45	80.803	1	72973000			17738	3549	12791	12887	17356;17357	17356					0.05462029477325814
GLNEEIARV	9	Unmodified	_GLNEEIARV_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-SECPEP	A375_MHC_IP_R1	1	501.1744079589844	2	500.774731	999.534909	-0.21075	-0.00010554	0.08222	4.1174E-05	-0.12853	-6.4365E-05	500.7747226848876	51.722	1.1681	51.722	51.322	52.49	0					56	22	4	0	0	0	0.011418	1	18329	18329		125.04	50.838	1	50037000			17739	1726	12792	12888	17358	17358					0.035122684378507074
GLNEEIARV	9	Unmodified	_GLNEEIARV_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-SECPEP	A375_MHC_IP_R2	2	501.1744384765625	2	500.774731	999.534909	-0.6839	-0.00034248	0.024957	1.2498E-05	-0.65895	-0.00032998	500.7746975896798	51.035	1.0125	51.789	51.412	52.425	0.75406					56	19	4	0	0	0	0.011418	1	19130	19130		114.19	30.758	1	46997000			17740	1726	12792	12888	17359	17359					0.035122684378507074
GLNKERLYW	9	Unmodified	_GLNKERLYW_					0	0	0		MUC16|p.R12473K|1|0.2|ENSG00000181143|chr19:8909401-8909401|C/T|missense_variant	MUC16|p.R12473K|1|0.2|ENSG00000181143|chr19:8909401-8909401|C/T|missense_variant	MUC16|p.R12473K|1|0.2|ENSG00000181143|chr19:8909401-8909401|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	590.2197875976562	2	589.819473	1177.62439	-0.33404	-0.00019702	-1.3694	-0.00080767	-1.7034	-0.0010047	589.8175320168532	94.504	0.65831	95.249	94.969	95.627	0.74474					17	12	2	0	0	0	0.43707	1	35937	35937		28.487	0	1	2489500			17741	14418	12793	12889	17360	17360					0.042685231172072235
GLNLLTEVTTY	11	Unmodified	_GLNLLTEVTTY_					0	0	0			REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61	REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61	MULTI-SECPEP	A375_MHC_IP_R1	1	408.9554138183594	3	408.555449	1222.64452	-0.13351	-5.4545E-05	0.1529	6.247E-05	0.019399	7.9255E-06	408.55551967415346	47.391	0.40799	47.391	47.159	47.567	0					12	7	2	0	0	0	0.99625	1	16698	16698		7.4771	7.4771	1	3618800	+		17742	16902	12794	12890	17361	17361					0.042102292665276764
GLNLLTEVTTY	11	Unmodified	_GLNLLTEVTTY_					0	0	0			REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61	REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61	MULTI-MSMS	A375_MHC_IP_R2	2	408.955322265625	3	408.555449	1222.64452	0.16945	6.9229E-05	-0.53402	-0.00021818	-0.36457	-0.00014895	408.55522547056955	46.573	0.50941	47.338	47.159	47.668	0.76519					15	9	2	0	0	0	0.7279	1	17474	17474		10.899	4.2755	1	2739100	+		17743	16902	12794	12890	17362	17362					0.042102292665276764
GLNLLTEVTTY	11	Unmodified	_GLNLLTEVTTY_					0	0	0			REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61	REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	408.555449	1222.64452	0.16945	6.9229E-05	-0.53402	-0.00021818	-0.36457	-0.00014895	408.55522547056955	46.573	0.50941	47.338	47.159	47.668	0.76519	-0.026433	-0.00055189	NaN	10.899	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2739100	+		17744	16902	12794	12890							0.042102292665276764
GLNWKMKKKRK	11	Unmodified	_GLNWKMKKKRK_					0	0	0		ENST00000542507.5_2_1:29095522-29095663:+|nuORF	ENST00000542507.5_2_1:29095522-29095663:+|nuORF	ENST00000542507.5_2_1:29095522-29095663:+|nuORF	MSMS	A375_MHC_IP_R1	1	708.9739379882812	2	708.934648	1415.85474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.523	1	92.523	92.023	93.023	0								0	0	0	0.16297	1	34003	34003		3.2813	0.78282	1				17745	13301	12795	12891	17363	17363					0.16345033178345147
GLPAGKKMTV	10	Unmodified	_GLPAGKKMTV_					0	0	0		DNAH5|p.P2646L|1|0.66|ENSG00000039139|chr5:13794009-13794009|G/A|missense_variant	DNAH5|p.P2646L|1|0.66|ENSG00000039139|chr5:13794009-13794009|G/A|missense_variant	DNAH5|p.P2646L|1|0.66|ENSG00000039139|chr5:13794009-13794009|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	501.6556091308594	2	501.294245	1000.57394	-1.0327	-0.00051767	0.53235	0.00026686	-0.50032	-0.00025081	501.2946220338644	56.825	0.71481	57.575	57.152	57.867	0.75014					25	13	2	0	0	0	0.24499	1	21492	21492		52.268	19.483	1	6663500			17746	768	12796	12892	17364	17364					0.07367277467869826
GLPAPDVSWY	10	Unmodified	_GLPAPDVSWY_					0	0	0		nc|ENSG00000120729|Q9UBF9|MYOT;ENSG00000120729|ENST00000239926|MYOT;nc|ENSG00000120729|Q9UBF9-2|MYOT	nc|ENSG00000120729|Q9UBF9|MYOT	nc|ENSG00000120729|Q9UBF9|MYOT	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1800537109375	2	552.771657	1103.52876	-0.67878	-0.00037521	0.37176	0.0002055	-0.30703	-0.00016972	553.2733149630819	90.196	0.55997	90.928	90.597	91.157	0.7318					14	10	2	0	0	0	0.9269	1	34202	34202		10.824	2.2306	1	1341400			17747	3685	12797	12893	17365	17365					-0.018862497936879663
GLPAPDVSWY	10	Unmodified	_GLPAPDVSWY_					0	0	0		nc|ENSG00000120729|Q9UBF9|MYOT;ENSG00000120729|ENST00000239926|MYOT;nc|ENSG00000120729|Q9UBF9-2|MYOT	nc|ENSG00000120729|Q9UBF9|MYOT	nc|ENSG00000120729|Q9UBF9|MYOT	MULTI-MATCH	A375_MHC_IP_R1	1		2	552.771657	1103.52876	-0.80406	-0.00044446	0.49788	0.00027521	-0.30618	-0.00016925	552.7715036733614	90.899	0.40661	90.899	90.692	91.098	0	-0.01446	8.6769E-05	NaN	6.7232	11	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1139300			17748	3685	12797	12893							-0.018862497936879663
GLPAPPRGL	9	Unmodified	_GLPAPPRGL_					0	0	0			REV__ENSG00000123364|ENST00000243056|HOXC13	REV__ENSG00000123364|ENST00000243056|HOXC13	MULTI-MSMS	A375_MHC_IP_R1	1	439.6664123535156	2	439.266345	876.518136	-0.058682	-2.5777E-05	0.093697	4.1158E-05	0.035014	1.5381E-05	439.26636073808237	38.86	5.133	38.86	37.556	42.689	0					293	100	5	0	0	0	0.1209	2	12815	12815;13069		46.921	0	1	188910000	+		17749	18240	12798	12894	17366;17367	17366					0.07493812342568162
GLPAPPRGL	9	Unmodified	_GLPAPPRGL_					0	0	0			REV__ENSG00000123364|ENST00000243056|HOXC13	REV__ENSG00000123364|ENST00000243056|HOXC13	MULTI-MSMS	A375_MHC_IP_R2	2	439.6661682128906	2	439.266345	876.518136	-0.58259	-0.00025591	0.13813	6.0677E-05	-0.44446	-0.00019524	439.2663910014294	38.45	4.2765	39.224	37.618	41.895	0.77451					273	83	4	0	0	0	0.030661	3	14304	13807;14304;14765		74.396	10.833	1	186450000	+		17750	18240	12798	12894	17368;17369;17370	17369					0.07493812342568162
GLPDFVKEL	9	Unmodified	_GLPDFVKEL_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2;nc|ENSG00000257743|Q2M2H8-3|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-SECPEP	A375_MHC_IP_R1	1	509.6844177246094	2	509.2844	1016.55425	-0.22936	-0.00011681	-0.16617	-8.4628E-05	-0.39553	-0.00020144	509.2842880620378	106.74	1.5353	106.74	106.16	107.7	0					75	29	4	0	0	0	0.10362	1	39273	39273		63.961	24.003	1	37715000			17751	9912	12799	12895	17371	17371					0.04663224728756177
GLPDFVKEL	9	Unmodified	_GLPDFVKEL_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2;nc|ENSG00000257743|Q2M2H8-3|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-MSMS	A375_MHC_IP_R2	2	509.6840515136719	2	509.2844	1016.55425	-0.74918	-0.00038154	-0.014618	-7.4446E-06	-0.76379	-0.00038899	509.28435802323196	105.79	1.5776	106.55	106.12	107.7	0.75977					78	30	4	0	0	0	0.056914	2	39951	39951;40149		61.602	13.256	1	36067000			17752	9912	12799	12895	17372;17373	17372					0.04663224728756177
GLPEGISLR	9	Unmodified	_GLPEGISLR_					0	0	0		ENSG00000006704|ENST00000424337|GTF2IRD1;nc|ENSG00000006704|Q9UHL9|GTF2IRD1;nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1	ENSG00000006704|ENST00000424337|GTF2IRD1	ENSG00000006704|ENST00000424337|GTF2IRD1	MSMS	A375_MHC_IP_R2	2	471.4046325683594	2	471.274367	940.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.577	1	62.322	61.822	62.822	0.74503								0	0	0	0.1535	1	23338	23338		15.847	2.3393	1				17753	925	12800	12896	17374	17374					0.0615347378881097
GLPEIRRQKSV	11	Unmodified	_GLPEIRRQKSV_					0	0	0		nc|ENSG00000122591|Q9BYI3-3|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	MULTI-MSMS	A375_MHC_IP_R1	1	641.7849731445312	2	641.883136	1281.75172	-0.85548	-0.00054912	-0.76384	-0.00049029	-1.6193	-0.0010394	641.8824870089005	136.36	0.87082	136.36	135.95	136.82	0					18	16	2	0	0	0	0.73239	1	52418	52418		12.241	10.759	1	1006000			17754	14572	12801	12897	17375	17375					0.12211243991396259
GLPELVIQL	9	Unmodified	_GLPELVIQL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	A375_MHC_IP_R1	1	491.7029113769531	2	491.302593	980.590633	-0.54436	-0.00026745	0.45632	0.00022419	-0.088049	-4.3259E-05	491.30265369943055	131.08	0.25455	131.08	130.97	131.23	0					8	4	2	0	0	0	0.009271	1	50551	50551		103.75	14.845	1	6580300			17755	1108	12802	12898	17376	17376					0.09956101625471092
GLPELVIQL	9	Unmodified	_GLPELVIQL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	A375_MHC_IP_R2	2	491.7019348144531	2	491.302593	980.590633	-0.52971	-0.00026025	-0.2732	-0.00013422	-0.80291	-0.00039447	491.3024382335074	130.87	0.25505	131.09	131.01	131.26	0.2142					6	4	2	0	0	0	0.018546	1	51510	51510		85.272	14.138	1	7761500			17756	1108	12802	12898	17377	17377					0.09956101625471092
GLPFLGALGCI	11	Unmodified	_GLPFLGALGCI_					0	0	0			REV__ENST00000558773.1_1_15:89453637-89453814:-|nuORF	REV__ENST00000558773.1_1_15:89453637-89453814:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	531.5313720703125	2	530.79662	1059.57869	-0.50545	-0.00026829	-2.4938	-0.0013237	-2.9993	-0.001592	530.7947528231483	97.359	0.7083	97.359	97.086	97.794	0					16	13	2	0	0	0	0.8113	1	35859	35859		21.747	6.9084	1	847530	+		17757	26139	12803	12899	17378	17378					0.0512816161065075
GLPHAPEASP	10	Unmodified	_GLPHAPEASP_					0	0	0			REV__ENSG00000166860|ENST00000300101|ZBTB39	REV__ENSG00000166860|ENST00000300101|ZBTB39	MULTI-MSMS	A375_MHC_IP_R2	2	488.6709899902344	2	488.248349	974.482145	-0.64268	-0.00031379	0.27527	0.0001344	-0.36741	-0.00017939	488.24873737497876	62.633	0.45644	63.375	63.028	63.484	0.74263					10	8	2	0	0	0	0.69306	1	23696	23696		13.906	1.3745	1	1089500	+		17758	20711	12804	12900	17379	17379					-0.0061168962496367385
GLPHPTSIRSC	11	Unmodified	_GLPHPTSIRSC_					0	0	0		ENST00000262428.4_1_16:84599828-84600011:-|nuORF	ENST00000262428.4_1_16:84599828-84600011:-|nuORF	ENST00000262428.4_1_16:84599828-84600011:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	390.588623046875	3	389.869485	1166.58663	-0.13305	-5.1873E-05	-0.42951	-0.00016745	-0.56256	-0.00021932	389.86937505881775	27.63	0.60819	28.308	27.996	28.604	0.67857					29	11	4	0	0	0	0.72869	1	9346	9346		5.5233	0	1	7116000			17759	10302	12805	12901	17380	17380					0.009996888601108367
GLPPAGRLP	9	Unmodified	_GLPPAGRLP_					0	0	0			REV__ENST00000543035.5_2_12:3068990-3120181:+|nuORF	REV__ENST00000543035.5_2_12:3068990-3120181:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	439.1559753417969	2	439.266345	876.518136	-0.058682	-2.5777E-05	0.093697	4.1158E-05	0.035014	1.5381E-05	439.26636073808237	38.86	5.133	38.86	37.556	42.689	0					293	100	5	0	0	0	0.043556	1	12911	12911		89.427	18.711	1	188910000	+		17760	25972	12806	12902	17381	17381					0.07493812342545425
GLPQGQVLV	9	Unmodified	_GLPQGQVLV_					0	0	0		ENST00000571210.1_1_17:19288554-19290486:-|nuORF	ENST00000571210.1_1_17:19288554-19290486:-|nuORF	ENST00000571210.1_1_17:19288554-19290486:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	455.1637878417969	2	455.77146	909.528367	-0.66239	-0.0003019	-1.0898	-0.0004967	-1.7522	-0.0007986	455.7719028630347	68.095	0.40522	68.095	67.854	68.26	0					16	7	3	0	0	0	0.69504	1	24595	24595		12.532	0	1	1222800			17761	13606	12807	12903	17382	17382					0.06998375277134983
GLPRFGIEMV	10	Unmodified	_GLPRFGIEMV_					0	0	0		ENSG00000103994|ENST00000564754|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106	ENSG00000103994|ENST00000564754|ZNF106	ENSG00000103994|ENST00000564754|ZNF106	MULTI-SECPEP	A375_MHC_IP_R2	2	560.204833984375	2	559.804977	1117.5954	-0.6375	-0.00035688	0.59613	0.00033371	-0.041375	-2.3162E-05	560.3069357995239	103.43	0.45823	104.19	103.99	104.45	0.76428					12	8	2	0	0	0	0.81668	1	39195	39195		31.268	22.675	1	1643200			17762	2477	12808	12904	17383	17383					0.04130662496595505
GLPSFSREV	9	Unmodified	_GLPSFSREV_					0	0	0		ENSG00000160993|ENST00000292566|ALKBH4	ENSG00000160993|ENST00000292566|ALKBH4	ENSG00000160993|ENST00000292566|ALKBH4	MULTI-SECPEP	A375_MHC_IP_R1	1	496.6636657714844	2	496.263999	990.513445	-0.3559	-0.00017662	-0.057106	-2.834E-05	-0.41301	-0.00020496	496.26390803930457	59.726	0.60955	59.726	59.448	60.057	0					19	11	2	0	0	0	0.23894	1	21482	21482		40.239	14.84	1	4627100			17763	6456	12809	12905	17384	17384					0.017808834091511017
GLPSSLTEL	9	Unmodified	_GLPSSLTEL_					0	0	0		DCN|p.P221S|2|0.29|ENSG00000011465|chr12:91153181-91153181|G/A|missense_variant	DCN|p.P221S|2|0.29|ENSG00000011465|chr12:91153181-91153181|G/A|missense_variant	DCN|p.P221S|2|0.29|ENSG00000011465|chr12:91153181-91153181|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	458.6609191894531	2	458.752933	915.491313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.062	1	83.062	82.562	83.562	0								0	0	0	0.14905	1	30386	30386		23.148	5.0134	1				17764	719	12810	12906	17385	17385					0.030186589406980602
GLPWIEKRL	9	Unmodified	_GLPWIEKRL_					0	0	0			REV__ENST00000561384.3_1_15:45118885-45118996:-|nuORF	REV__ENST00000561384.3_1_15:45118885-45118996:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	371.93255615234375	3	371.225598	1110.65496	0.12556	4.6612E-05	0.29853	0.00011082	0.42409	0.00015743	371.2256550073118	31.034	0.50668	31.034	30.653	31.16	0					15	9	2	0	0	0	0.77948	1	9889	9889		6.6304	3.0339	1	1385300	+		17765	26176	12811	12907	17386	17386					0.1040630150225752
GLQDKNSI	8	Unmodified	_GLQDKNSI_					0	0	0			REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	437.5296936035156	2	437.735074	873.455596	-0.081852	-3.5829E-05	-0.77787	-0.0003405	-0.85972	-0.00037633	437.73493601910667	97.995	0.60873	97.995	97.794	98.403	0					14	11	2	0	0	0	0.76683	1	36030	36030		15.768	0	1	598790	+		17766	28607	12812	12908	17387	17387					0.01380621483701816
GLQDTWDVS	9	Unmodified	_GLQDTWDVS_					0	0	0			REV__ENSG00000149115|ENST00000358252|TNKS1BP1	REV__ENSG00000149115|ENST00000358252|TNKS1BP1	MULTI-MSMS	A375_MHC_IP_R1	1	510.6750793457031	2	510.735271	1019.45599	-0.48723	-0.00024885	-0.65044	-0.0003322	-1.1377	-0.00058105	510.73500341482617	58.051	1.1178	58.051	57.618	58.736	0					52	21	4	0	0	0	0.6898	1	21042	21042		7.9102	7.9102	1	3820200	+		17767	19661	12813	12909	17388	17388					-0.05296003587091036
GLQEAQYRL	9	Unmodified	_GLQEAQYRL_					0	0	0		ENSG00000178105|ENST00000322536|DDX10;ENST00000534774.1_1_11:108535817-108546498:+|nuORF	ENSG00000178105|ENST00000322536|DDX10	ENSG00000178105|ENST00000322536|DDX10	MULTI-SECPEP	A375_MHC_IP_R2	2	539.1534423828125	2	539.288005	1076.56146	-0.75402	-0.00040663	0.56913	0.00030693	-0.18489	-9.9707E-05	539.2882567628744	48.096	0.35125	48.858	48.582	48.933	0.76128					11	6	2	0	0	0	0.24324	1	18045	18045		53.833	17.789	1	2128400			17768	8134	12814	12910	17389	17389					0.02623957329183213
GLQEFKAAIE	10	Unmodified	_GLQEFKAAIE_					0	0	0		ENSG00000154359|ENST00000398246|LONRF1;nc|ENSG00000154359|Q17RB8-2|LONRF1;LONRF1|p.L299Ffs*8|1|0.2|ENSG00000154359|chr8:12740940-12740940|T/-|frameshift_variant	ENSG00000154359|ENST00000398246|LONRF1	ENSG00000154359|ENST00000398246|LONRF1	MULTI-SECPEP	A375_MHC_IP_R1	1	368.5942077636719	3	369.201118	1104.58152	0.28019	0.00010345	0.022204	8.1979E-06	0.3024	0.00011165	369.20103178554325	34.706	0.45544	34.706	34.456	34.912	0					13	8	2	0	0	0	0.83355	1	11546	11546		10.899	2.4547	1	8648400			17769	6083	12815	12911	17390	17390					0.03341708269135779
GLQEGTHEL	9	Unmodified	_GLQEGTHEL_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-MSMS	A375_MHC_IP_R1	1	492.6428527832031	2	492.243264	982.471974	-0.665	-0.00032734	0.033952	1.6713E-05	-0.63105	-0.00031063	492.2432915664636	30.28	1.0092	30.28	30.049	31.059	0					33	19	3	0	0	0	0.0090323	2	9580	9570;9580		111.29	26.015	1	48871000			17770	7900	12816	12912	17391;17392	17392					-0.019962973501833403
GLQEGTHEL	9	Unmodified	_GLQEGTHEL_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-MSMS	A375_MHC_IP_R2	2	492.7207946777344	2	492.243264	982.471974	-1.1335	-0.00055793	0.39447	0.00019417	-0.73898	-0.00036376	492.24342625698995	29.562	1.0624	30.261	30.032	31.094	0.69872					41	20	4	0	0	0	0.06083	1	10284	10284		60.074	10.141	1	40774000			17771	7900	12816	12912	17393	17393					-0.019962973501833403
GLQEYVEAV	9	Unmodified	_GLQEYVEAV_					0	0	0		ENSG00000116918|ENST00000366639|TSNAX	ENSG00000116918|ENST00000366639|TSNAX	ENSG00000116918|ENST00000366639|TSNAX	MULTI-SECPEP	A375_MHC_IP_R1	1	504.6557312011719	2	504.25584	1006.49713	-0.60641	-0.00030578	-0.20698	-0.00010437	-0.81339	-0.00041016	504.25568496280533	90.91	0.96484	90.91	90.539	91.503	0					51	18	4	0	0	0	0.034037	1	33360	33360		99.799	34.564	1	18875000			17772	3444	12817	12913	17394	17394					-0.005862425476152566
GLQEYVEAV	9	Unmodified	_GLQEYVEAV_					0	0	0		ENSG00000116918|ENST00000366639|TSNAX	ENSG00000116918|ENST00000366639|TSNAX	ENSG00000116918|ENST00000366639|TSNAX	MULTI-SECPEP	A375_MHC_IP_R2	2	504.6556701660156	2	504.25584	1006.49713	-0.57696	-0.00029093	0.078388	3.9528E-05	-0.49857	-0.00025141	504.25581995662037	90.245	1.2206	90.977	90.493	91.714	0.7318					56	23	4	0	0	0	0.03109	1	34281	34281		92.653	36.476	1	23467000			17773	3444	12817	12913	17395	17395					-0.005862425476152566
GLQGFLVEA	9	Unmodified	_GLQGFLVEA_					0	0	0		ENST00000572554.1_1_17:4844392-4846237:+|nuORF;nc|ENSG00000108523|Q9H6Y7-2|RNF167;ENSG00000108523|ENST00000262482|RNF167	ENST00000572554.1_1_17:4844392-4846237:+|nuORF	ENST00000572554.1_1_17:4844392-4846237:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	467.68341064453125	2	467.255643	932.496732	-0.56611	-0.00026452	0.46285	0.00021627	-0.10326	-4.8249E-05	467.2558763804079	109.05	0.41039	109.79	109.52	109.93	0.74684					12	7	2	0	0	0	0.43185	1	41186	41186		23.148	3.7094	1	691750			17774	2811	12818	12914	17396	17396					0.02778382523183609
GLQGRVTTV	9	Unmodified	_GLQGRVTTV_					0	0	0		ENSG00000181817|ENST00000315732|LSM10;ENST00000476041.1_1_1:36859367-36863370:-|nuORF	ENSG00000181817|ENST00000315732|LSM10	ENSG00000181817|ENST00000315732|LSM10	MULTI-MSMS	A375_MHC_IP_R1	1	466.1713562011719	2	465.771991	929.529429	-0.42078	-0.00019599	-0.036996	-1.7232E-05	-0.45777	-0.00021322	465.7718920311078	30.983	0.40475	30.983	30.806	31.211	0					11	7	2	0	0	0	0.021889	1	9922	9922		81.89	6.9612	1	3629500			17775	8364	12819	12915	17397	17397					0.061845896460340555
GLQHWVPEL	9	Unmodified	_GLQHWVPEL_					0	0	0		ENST00000559997.5_1_15:89448698-89456595:-|nuORF;ENST00000558352.5_1_15:89449802-89456595:-|nuORF;nc|ENSG00000140545|Q08431-3|MFGE8;nc|ENSG00000140545|Q08431-4|MFGE8;ENSG00000140545|ENST00000268150|MFGE8	ENST00000559997.5_1_15:89448698-89456595:-|nuORF	ENST00000559997.5_1_15:89448698-89456595:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	540.3190307617188	2	539.787641	1077.56073	-0.53625	-0.00028946	0.033812	1.8251E-05	-0.50244	-0.00027121	539.7876948211625	92.092	0.70724	92.092	91.756	92.463	0					31	13	3	0	0	0	0.12748	1	33873	33873		58.679	22.552	1	5313700			17776	5167	12820	12916	17398	17398					0.02505162680131434
GLQHWVPEL	9	Unmodified	_GLQHWVPEL_					0	0	0		ENST00000559997.5_1_15:89448698-89456595:-|nuORF;ENST00000558352.5_1_15:89449802-89456595:-|nuORF;nc|ENSG00000140545|Q08431-3|MFGE8;nc|ENSG00000140545|Q08431-4|MFGE8;ENSG00000140545|ENST00000268150|MFGE8	ENST00000559997.5_1_15:89448698-89456595:-|nuORF	ENST00000559997.5_1_15:89448698-89456595:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	540.1874389648438	2	539.787641	1077.56073	-0.75391	-0.00040695	0.34988	0.00018886	-0.40403	-0.00021809	539.7877428234827	91.241	0.7076	91.975	91.566	92.273	0.73451					32	13	3	0	0	0	0.27114	1	34707	34707		68.081	68.081	1	5292900			17777	5167	12820	12916	17399	17399					0.02505162680131434
GLQKEIAEL	9	Unmodified	_GLQKEIAEL_					0	0	0		nc|ENSG00000075426|P15408-3|FOSL2;nc|ENSG00000075426|P15408-2|FOSL2;ENSG00000075426|ENST00000264716|FOSL2	nc|ENSG00000075426|P15408-3|FOSL2	nc|ENSG00000075426|P15408-3|FOSL2	MULTI-SECPEP	A375_MHC_IP_R1	1	501.18701171875	2	500.787307	999.560061	-0.41116	-0.00020591	0.24527	0.00012283	-0.16589	-8.3078E-05	500.7873410988862	60.965	0.61137	60.965	60.719	61.331	0					16	11	2	0	0	0	0.046478	1	21973	21973		92.653	16.892	1	3752400			17778	1611	12821	12917	17400	17400					0.060263232404167866
GLQKEIAEL	9	Unmodified	_GLQKEIAEL_					0	0	0		nc|ENSG00000075426|P15408-3|FOSL2;nc|ENSG00000075426|P15408-2|FOSL2;ENSG00000075426|ENST00000264716|FOSL2	nc|ENSG00000075426|P15408-3|FOSL2	nc|ENSG00000075426|P15408-3|FOSL2	MULTI-SECPEP	A375_MHC_IP_R2	2	501.18701171875	2	500.787307	999.560061	-0.91542	-0.00045843	0.40912	0.00020488	-0.5063	-0.00025355	500.78738543457223	60.125	0.60954	60.872	60.553	61.162	0.74714					19	11	2	0	0	0	0.036758	1	22727	22727		89.401	20.296	1	3801400			17779	1611	12821	12917	17401	17401					0.060263232404167866
GLQLLANAVI	10	Unmodified	_GLQLLANAVI_					0	0	0		ENSG00000121281|ENST00000673801|ADCY7	ENSG00000121281|ENST00000673801|ADCY7	ENSG00000121281|ENST00000673801|ADCY7	MULTI-SECPEP	A375_MHC_IP_R2	2	505.68682861328125	2	506.313492	1010.61243	-0.69631	-0.00035255	-0.70028	-0.00035456	-1.3966	-0.00070712	506.3133299067568	83.387	1.8815	84.127	83.344	85.225	0.73962					111	36	4	0	0	0	0.69172	1	31605	31605		19.257	5.3509	1	100580000			17780	3715	12822	12918	17402	17402					0.1075490637402936
GLRCDCCAC	9	Unmodified	_GLRCDCCAC_					0	0	0			REV__ENST00000537568.1_1_12:16747235-16762728:-|nuORF	REV__ENST00000537568.1_1_12:16747235-16762728:-|nuORF	MSMS	A375_MHC_IP_R2	2	472.115478515625	2	472.166276	942.317998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.413	1	96.163	95.663	96.663	0.75045								0	0	0	0.15486	1	36245	36245		2.3027	0	1		+		17781	16372	12823	12919	17403	17403					-0.1554681297488969
GLRCRHDKL	9	Unmodified	_GLRCRHDKL_					0	0	0			REV__ENSG00000131061|ENST00000375200|ZNF341	REV__ENSG00000131061|ENST00000375200|ZNF341	MULTI-SECPEP	A375_MHC_IP_R1	1	366.6446533203125	3	366.53807	1096.59238	0.42759	0.00015673	-0.60315	-0.00022108	-0.17556	-6.435E-05	366.5379388387419	43.254	0.45831	43.254	42.993	43.451	0					13	8	3	0	0	0	0.78798	1	14972	14972		0.86438	0	1	1447600	+		17782	18585	12824	12920	17404	17404					0.04794832162428975
GLREILPV	8	Unmodified	_GLREILPV_					0	0	0			REV__ENSG00000273749|ENST00000617928|CYFIP1	REV__ENSG00000273749|ENST00000617928|CYFIP1	MULTI-SECPEP	A375_MHC_IP_R2	2	449.18170166015625	2	448.781828	895.549102	-0.24891	-0.00011171	0.18009	8.0821E-05	-0.068821	-3.0886E-05	448.78181506697564	88.008	0.65998	88.74	88.468	89.128	0.7318					24	12	3	0	0	0	0.59711	1	33470	33470		28.487	0	1	6046000	+		17783	22953	12825	12921	17405	17405					0.09714965656803543
GLREILPV	8	Unmodified	_GLREILPV_					0	0	0			REV__ENSG00000273749|ENST00000617928|CYFIP1	REV__ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	448.781828	895.549102	-0.016116	-7.2327E-06	-0.29333	-0.00013164	-0.30944	-0.00013887	448.781649556376	88.998	0.61098	88.998	88.764	89.375	0	0.12883	-0.00021221	NaN	28.487	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5129600	+		17784	22953	12825	12921							0.09714965656803543
GLRGITIAPIA	11	Unmodified	_GLRGITIAPIA_					0	0	0			REV__ENSG00000105576|ENST00000425528|TNPO2	REV__ENSG00000105576|ENST00000425528|TNPO2	MULTI-MSMS	A375_MHC_IP_R1	1	361.629150390625	3	361.229119	1080.66553	0.24436	8.827E-05	-0.40268	-0.00014546	-0.15832	-5.7191E-05	361.22893734452344	62.306	0.512	62.306	62.097	62.609	0					17	9	3	0	0	0	0.72909	1	22523	22523		9.7643	0.22028	1	2066200	+		17785	17393	12826	12922	17406	17406					0.1284228415670441
GLRKIIVRVLL	11	Unmodified	_GLRKIIVRVLL_					0	0	0		ENST00000464167.5_1_3:197676878-197677004:+|nuORF	ENST00000464167.5_1_3:197676878-197677004:+|nuORF	ENST00000464167.5_1_3:197676878-197677004:+|nuORF	MSMS	A375_MHC_IP_R2	2	427.2978210449219	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.664	1	57.414	56.914	57.914	0.75015								0	0	0	0.16358	1	21420	21420		0.094841	0	1				17786	12222	12827	12923	17407	17407					0.25807349203978447
GLRKWQFDVW	10	Unmodified	_GLRKWQFDVW_					0	0	0		nc|ENSG00000173175|O95622-2|ADCY5;ENSG00000173175|ENST00000462833|ADCY5;ENSG00000155897|ENST00000286355|ADCY8;nc|ENSG00000174233|O43306-2|ADCY6;ENSG00000174233|ENST00000357869|ADCY6	nc|ENSG00000173175|O95622-2|ADCY5;nc|ENSG00000174233|O43306-2|ADCY6	nc|ENSG00000173175|O95622-2|ADCY5	MULTI-SECPEP	A375_MHC_IP_R1	1	445.66058349609375	3	445.571657	1333.69314	-0.13593	-6.0567E-05	-0.43654	-0.00019451	-0.57247	-0.00025508	445.57134272087546	27.381	0.35475	27.381	27.128	27.482	0					10	6	2	0	0	0	0.94819	1	8190	8190		0.15932	0.01943	1	1711600			17787	7774;7865	12828	12924	17408	17408					0.039641874169319635
GLRLLGAL	8	Unmodified	_GLRLLGAL_					0	0	0			REV__nc|ENSG00000135835|Q5VZ46-2|KIAA1614	REV__nc|ENSG00000135835|Q5VZ46-2|KIAA1614	MULTI-SECPEP	A375_MHC_IP_R2	2	407.1711730957031	2	406.771263	811.527973	-0.04604	-1.8728E-05	0.10829	4.405E-05	0.062251	2.5322E-05	406.7712362346593	74.875	0.76094	75.613	75.365	76.126	0.73751					21	14	2	0	0	0	0.31137	1	28428	28428		40.449	0	1	1657500	+		17788	18890	12829	12925	17409	17409					0.11467000347931844
GLRLTHVSAF	10	Unmodified	_GLRLTHVSAF_					0	0	0		ENST00000591276.1_1_19:990686-991256:+|nuORF	ENST00000591276.1_1_19:990686-991256:+|nuORF	ENST00000591276.1_1_19:990686-991256:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	368.6158447265625	3	367.545219	1099.61383	0.47065	0.00017298	1.0977	0.00040346	1.5684	0.00057644	367.54513806686873	35.609	0.66343	35.609	35.269	35.932	0					43	12	6	0	0	0	0.70329	1	11921	11921		6.1918	0	1	16383000			17789	13795	12830	12926	17410	17410					0.06800540462791105
GLRLTHVSAF	10	Unmodified	_GLRLTHVSAF_					0	0	0		ENST00000591276.1_1_19:990686-991256:+|nuORF	ENST00000591276.1_1_19:990686-991256:+|nuORF	ENST00000591276.1_1_19:990686-991256:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	368.5941162109375	3	367.545219	1099.61383	-0.020917	-7.6881E-06	1.1238	0.00041306	1.1029	0.00040537	367.5451640718997	34.576	0.81163	35.338	35.015	35.827	0.7613					44	15	4	0	0	0	0.70329	1	12636	12636		6.1918	0.78914	1	13027000			17790	13795	12830	12926	17411	17411					0.06800540462791105
GLRLWKRRWFV	11	Unmodified	_GLRLWKRRWFV_					0	0	0		nc|ENSG00000105559|Q9H4M7-2|PLEKHA4;ENSG00000105559|ENST00000263265|PLEKHA4	nc|ENSG00000105559|Q9H4M7-2|PLEKHA4	nc|ENSG00000105559|Q9H4M7-2|PLEKHA4	MULTI-SECPEP	A375_MHC_IP_R2	2	759.2113647460938	2	758.95423	1515.89391	-0.75906	-0.00057609	1.4987	0.0011374	0.73961	0.00056133	758.9571562882509	117.14	0.25552	117.8	117.63	117.89	0.65962					6	4	2	0	0	0	1.0007	1	44254	44254		0.35063	0.35063	1	3444500			17791	2617	12831	12927	17412	17412					0.15659501524237385
GLRMPFDEKM	10	Unmodified	_GLRMPFDEKM_					0	0	0		nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1	nc|ENSG00000116127|Q8TCU4-3|ALMS1	nc|ENSG00000116127|Q8TCU4-3|ALMS1	MULTI-SECPEP	A375_MHC_IP_R1	1	408.2840270996094	3	408.535226	1222.58385	-0.30285	-0.00012373	1.5891	0.00064918	1.2862	0.00052546	408.8711058796222	19.359	0.3335	19.359	19.238	19.571	0					8	6	2	0	0	0	0.93194	1	4783	4783		8.4443	3.0416	1	1440000			17792	3371	12832	12928	17413	17413					-0.018539025890731864
GLRPLVAL	8	Unmodified	_GLRPLVAL_					0	0	0			REV__chr2:65055620-65055915|421|14.72|0.0|20.49|-|1|None,LINC02245|1	REV__chr2:65055620-65055915|421|14.72|0.0|20.49|-|1|None,LINC02245|1	MULTI-SECPEP	A375_MHC_IP_R2	2	420.1786193847656	2	419.779088	837.543623	-0.26719	-0.00011216	-0.29538	-0.00012399	-0.56257	-0.00023616	419.7789477085407	72.244	0.35361	72.978	72.82	73.174	0.73421					11	6	2	0	0	0	0.91495	1	27446	27446		24.674	0	1	1502900	+		17793	15739	12833	12929	17414	17414					0.11835286864993577
GLRRRLRRRHH	11	Unmodified	_GLRRRLRRRHH_					0	0	0		ENST00000483107.5_1_22:21329983-21333988:+|nuORF	ENST00000483107.5_1_22:21329983-21333988:+|nuORF	ENST00000483107.5_1_22:21329983-21333988:+|nuORF	MSMS	A375_MHC_IP_R1	1	756.871337890625	2	756.9696	1511.92465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.31	1	130.31	129.81	130.81	0								0	0	0	0.16331	1	50143	50143		1.4819	0.28856	1				17794	12537	12834	12930	17415	17415					0.18916092681865848
GLRSFPSKK	9	Unmodified	_GLRSFPSKK_					0	0	0			REV__ENST00000461200.5_1_11:2335717-2335957:+|nuORF	REV__ENST00000461200.5_1_11:2335717-2335957:+|nuORF	MSMS	A375_MHC_IP_R2	2	510.2041931152344	2	510.303458	1018.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.09	1	118.7	118.2	119.2	0.60909								0	0	0	0.15486	1	44802	44802		6.7232	0.51738	1		+		17795	16474	12835	12931	17416	17416					0.08381155434096854
GLRVRFNPLAL	11	Unmodified	_GLRVRFNPLAL_					0	0	0		ENST00000554432.1_1_14:104205014-104205387:-|nuORF;ENST00000556334.5_1_14:104201493-104205387:-|nuORF;ENST00000555391.5_1_14:104201493-104210315:-|nuORF;ENSG00000088808|ENST00000202556|PPP1R13B	ENST00000554432.1_1_14:104205014-104205387:-|nuORF	ENST00000554432.1_1_14:104205014-104205387:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	419.65924072265625	3	419.259302	1254.75608	0.19529	8.1879E-05	0.031439	1.3181E-05	0.22673	9.506E-05	419.2593136887012	68.744	1.4697	68.744	68.412	69.882	0					83	28	5	0	0	0	0.79632	1	24897	24897		14.218	0	1	79514000			17796	1896	12836	12932	17417	17417					0.138887532049921
GLRVRFNPLAL	11	Unmodified	_GLRVRFNPLAL_					0	0	0		ENST00000554432.1_1_14:104205014-104205387:-|nuORF;ENST00000556334.5_1_14:104201493-104205387:-|nuORF;ENST00000555391.5_1_14:104201493-104210315:-|nuORF;ENSG00000088808|ENST00000202556|PPP1R13B	ENST00000554432.1_1_14:104205014-104205387:-|nuORF	ENST00000554432.1_1_14:104205014-104205387:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	419.6590576171875	3	419.259302	1254.75608	-0.0091021	-3.8161E-06	-0.11489	-4.8167E-05	-0.12399	-5.1983E-05	419.2592468955647	67.801	1.778	68.536	68.204	69.982	0.73511					94	34	5	0	0	0	0.59093	1	25638	25638		14.218	2.0434	1	76458000			17797	1896	12836	12932	17418	17418					0.138887532049921
GLRWWFFIFVL	11	Unmodified	_GLRWWFFIFVL_					0	0	0			REV__SVA_D_dup914|chr11:75876850-75878935:-|1.3000520484701088|0.1350535341105196|3.27|462.0|19|2|sense	REV__SVA_D_dup914|chr11:75876850-75878935:-|1.3000520484701088|0.1350535341105196|3.27|462.0|19|2|sense	MULTI-MSMS	A375_MHC_IP_R2	2	495.6502685546875	3	495.279814	1482.81761	-0.38565	-0.000191	0.91587	0.00045361	0.53022	0.00026261	495.28006970760697	87.661	0.40329	88.392	88.116	88.519	0.7318					11	7	2	0	0	0	0.73781	2	33263	33263;33356		1.4551	0.12547	1	2916200	+		17798	28067	12837	12933	17419;17420	17419					0.09551684904249669
GLSAFLHAL	9	Unmodified	_GLSAFLHAL_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4;ENST00000588806.1_1_17:40665776-40673135:+|nuORF;ENSG00000110719|ENST00000265686|TCIRG1;ENST00000533005.5_1_11:67811756-67818283:+|nuORF;nc|ENSG00000110719|Q13488-2|TCIRG1;nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	ENSG00000105929|ENST00000310018|ATP6V0A4;ENSG00000110719|ENST00000265686|TCIRG1;nc|ENSG00000033627|Q93050-1|ATP6V0A1	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-MSMS	A375_MHC_IP_R1	1	465.1659240722656	2	464.766178	927.517802	-0.092957	-4.3203E-05	-0.2929	-0.00013613	-0.38585	-0.00017933	464.76601473905833	110.82	0.46074	110.82	110.54	111	0					14	8	2	0	0	0	0.10558	1	40622	40622		49.669	0	1	1737000			17799	2650;2944;1125	12838	12934	17421	17421					0.05114392622692776
GLSAFLHAL	9	Unmodified	_GLSAFLHAL_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4;ENST00000588806.1_1_17:40665776-40673135:+|nuORF;ENSG00000110719|ENST00000265686|TCIRG1;ENST00000533005.5_1_11:67811756-67818283:+|nuORF;nc|ENSG00000110719|Q13488-2|TCIRG1;nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	ENSG00000105929|ENST00000310018|ATP6V0A4;ENSG00000110719|ENST00000265686|TCIRG1;nc|ENSG00000033627|Q93050-1|ATP6V0A1	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-MSMS	A375_MHC_IP_R2	2	465.1656494140625	2	464.766178	927.517802	-0.49542	-0.00023026	-0.19117	-8.8847E-05	-0.68659	-0.0003191	464.7661125999175	109.69	0.5581	110.44	110.13	110.69	0.74683					16	10	2	0	0	0	0.10558	2	41415	41415;41426		49.669	0	1	1194100			17800	2650;2944;1125	12838	12934	17422;17423	17422					0.05114392622692776
GLSALLLTL	9	Unmodified	_GLSALLLTL_					0	0	0			REV__ENST00000371740.9_1_6:44193872-44195054:+|nuORF	REV__ENST00000371740.9_1_6:44193872-44195054:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	901.656982421875	1	900.576445	899.569169	-0.45042	-0.00040564	0.15208	0.00013696	-0.29835	-0.00026868	900.5765931097342	129.96	0.35263	130.17	130	130.35	0.2142					8	6	2	0	0	0	0.5339	1	51114	51114		18.135	9.5417	1	10214000	+		17801	24051	12839	12935	17424	17424					0.11536716596742735
GLSAPHEPV	9	Unmodified	_GLSAPHEPV_					0	0	0		nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1;ENST00000532415.5_1_16:18480742-18495490:-|nuORF;ENST00000532739.1_1_16:16450692-16458759:+|nuORF;ENST00000568591.5_1_16:2156634-2167660:-|nuORF;ENST00000458669.1_1_16:16412841-16418244:+|nuORF;ENST00000536260.5_1_16:16412841-16418555:+|nuORF;ENST00000525846.6_1_16:18437791-18443539:-|nuORF	nc|ENSG00000008710|P98161-2|PKD1	nc|ENSG00000008710|P98161-2|PKD1	MULTI-MSMS	A375_MHC_IP_R1	1	453.6504821777344	2	453.737617	905.460681	-0.25501	-0.00011571	0.12656	5.7425E-05	-0.12846	-5.8285E-05	453.73765323013885	34.244	0.75813	34.244	34.001	34.759	0					19	14	2	0	0	0	0.27971	1	11300	11300		32.117	3.6301	1	2043400			17802	962	12840	12936	17425	17425					0.004169253463260247
GLSEDKRYRW	10	Unmodified	_GLSEDKRYRW_					0	0	0			REV__ENST00000275034.4_1_6:79675427-79675676:-|nuORF	REV__ENST00000275034.4_1_6:79675427-79675676:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	437.1452941894531	3	437.226438	1308.65748	-0.1074	-4.6956E-05	0.3232	0.00014131	0.21581	9.4356E-05	437.2265843476454	47.257	0.45879	48.018	47.715	48.174	0.76128					14	8	2	0	0	0	0.94163	1	17606	17606		1.7423	1.7423	1	1578300	+		17803	23296	12841	12937	17426	17426					0.015501051692808687
GLSEEIPEV	9	Unmodified	_GLSEEIPEV_					0	0	0		ENSG00000187546|ENST00000342526|AGMO	ENSG00000187546|ENST00000342526|AGMO	ENSG00000187546|ENST00000342526|AGMO	MULTI-SECPEP	A375_MHC_IP_R2	2	487.147705078125	2	486.747847	971.481142	-0.50644	-0.00024651	-0.39999	-0.0001947	-0.90644	-0.00044121	486.74755393795425	87.594	0.50442	88.326	88.066	88.57	0.7318					20	9	3	0	0	0	0.3243	1	33377	33377		44.407	14.182	1	1356100			17804	8834	12842	12938	17427	17427					-0.005739487845289659
GLSEEIPEV	9	Unmodified	_GLSEEIPEV_					0	0	0		ENSG00000187546|ENST00000342526|AGMO	ENSG00000187546|ENST00000342526|AGMO	ENSG00000187546|ENST00000342526|AGMO	MULTI-MATCH	A375_MHC_IP_R1	1		2	486.747847	971.481142	-0.18891	-9.195E-05	-0.40857	-0.00019887	-0.59747	-0.00029082	486.74757882104586	88.332	0.51045	88.332	87.949	88.46	0	0.0033675	-1.3676E-06	NaN	44.407	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1518700			17805	8834	12842	12938							-0.005739487845289659
GLSEFTEYL	9	Unmodified	_GLSEFTEYL_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-MSMS	A375_MHC_IP_R1	1	1058.9019775390625	1	1058.50407	1057.49679	0.01009	1.068E-05	-1.0071	-0.001066	-0.997	-0.0010553	1058.5025678697157	125.12	0.25048	125.12	125	125.25	0					6	4	2	0	0	0	0.012712	1	47533	47533		92.822	28.586	1	54330000			17806	4343	12843	12939	17428	17428					-0.02965662267456537
GLSELNDLYL	10	Unmodified	_GLSELNDLYL_					0	0	0			REV__ENSG00000244219|ENST00000431679|TMEM225B	REV__ENSG00000244219|ENST00000431679|TMEM225B	MULTI-SECPEP	A375_MHC_IP_R2	2	568.2192993164062	2	568.795329	1135.5761	-0.44391	-0.00025249	-0.19765	-0.00011242	-0.64155	-0.00036491	568.7951078399632	70.904	0.50635	71.638	71.402	71.908	0.73421					17	9	3	0	0	0	0.37864	1	26933	26933		45.7	0	1	4664300	+		17807	22821	12844	12940	17429	17429					0.013739846866428707
GLSEPIFQL	9	Unmodified	_GLSEPIFQL_					0	0	0		ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-MSMS	A375_MHC_IP_R1	1	502.677490234375	2	502.276575	1002.5386	-0.16767	-8.4215E-05	1.1561	0.00058069	0.98846	0.00049648	502.27708767369137	126.15	0.45461	126.15	125.95	126.41	0					16	8	3	0	0	0	0.0014061	1	48192	48192		149.99	21.629	1	12610000			17808	7575	12845	12941	17430	17430					0.03742938211712499
GLSEPIFQL	9	Unmodified	_GLSEPIFQL_					0	0	0		ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-MSMS	A375_MHC_IP_R2	2	502.67633056640625	2	502.276575	1002.5386	-0.58077	-0.00029171	-0.58251	-0.00029258	-1.1633	-0.00058429	502.2762965959799	125.69	0.40282	125.98	125.72	126.12	0.2951					16	7	3	0	0	0	0.0060803	1	49092	49092		164.52	22.689	1	24057000			17809	7575	12845	12941	17431	17431					0.03742938211712499
GLSESSVKV	9	Unmodified	_GLSESSVKV_					0	0	0		ENST00000460495.5_1_3:137956301-138014731:+|nuORF;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8;nc|ENSG00000114098|Q8IUR7-8|ARMC8;ENST00000466762.1_1_3:137982532-137982673:+|nuORF	ENST00000460495.5_1_3:137956301-138014731:+|nuORF	ENST00000460495.5_1_3:137956301-138014731:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	453.6504821777344	2	453.250557	904.486562	-0.26801	-0.00012148	0.12235	5.5456E-05	-0.14566	-6.602E-05	453.2505463366098	34.341	0.40358	34.341	34.154	34.557	0					17	7	3	0	0	0	0.37663	1	11300	11300		43.772	9.67	1	8550500			17810	3196	12846	12942	17432	17432					0.0304977479796662
GLSESSVKV	9	Unmodified	_GLSESSVKV_					0	0	0		ENST00000460495.5_1_3:137956301-138014731:+|nuORF;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8;nc|ENSG00000114098|Q8IUR7-8|ARMC8;ENST00000466762.1_1_3:137982532-137982673:+|nuORF	ENST00000460495.5_1_3:137956301-138014731:+|nuORF	ENST00000460495.5_1_3:137956301-138014731:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	453.6501159667969	2	453.250557	904.486562	-0.7221	-0.00032729	0.079029	3.582E-05	-0.64307	-0.00029147	453.2505380495058	33.577	0.50536	34.329	34.146	34.651	0.75225					18	9	3	0	0	0	0.13208	1	12038	12038		66.457	28.483	1	7560300			17811	3196	12846	12942	17433	17433					0.0304977479796662
GLSGFALF	8	Unmodified	_GLSGFALF_					0	0	0			REV__ENST00000441302.6_1_3:39139729-39142014:-|nuORF	REV__ENST00000441302.6_1_3:39139729-39142014:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	811.5615234375	1	811.434867	810.42759	-0.081241	-6.5922E-05	2.4749	0.0020082	2.3936	0.0019423	811.4347056992598	126.48	0.20204	126.48	126.36	126.56	0					5	3	2	0	0	0	0.91495	1	48296	48296		24.674	8.9057	1	9553700	+		17812	24808	12847	12943	17434	17434					0.014793432942724394
GLSGFLLE	8	Unmodified	_GLSGFLLE_					0	0	0		nc|ENSG00000213901|Q6PIS1-5|SLC23A3;ENSG00000213901|ENST00000409878|SLC23A3;nc|ENSG00000213901|Q6PIS1-2|SLC23A3	nc|ENSG00000213901|Q6PIS1-5|SLC23A3	nc|ENSG00000213901|Q6PIS1-5|SLC23A3	MULTI-SECPEP	A375_MHC_IP_R2	2	835.6632080078125	1	835.455996	834.448719	-0.71366	-0.00059624	2.5258	0.0021102	1.8121	0.001514	835.4580602502581	125.06	0.25314	125.38	125.2	125.45	0.32423					7	4	2	0	0	0	0.92636	1	48559	48559		16.942	0	1	24452000			17813	9586	12848	12944	17435	17435					0.02487308603144811
GLSHVDYAL	9	Unmodified	_GLSHVDYAL_					0	0	0		ENST00000469042.5_1_3:132298334-132378619:-|nuORF;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11;nc|ENSG00000240303|Q709F0-3|ACAD11	ENST00000469042.5_1_3:132298334-132378619:-|nuORF	ENST00000469042.5_1_3:132298334-132378619:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	488.15008544921875	2	487.750724	973.486896	-0.21281	-0.0001038	-0.37443	-0.00018263	-0.58724	-0.00028643	487.75061773136855	57.134	0.459	57.134	56.905	57.364	0					19	8	3	0	0	0	0.16229	1	20477	20477		39.957	13.074	1	4434900			17814	9772	12849	12945	17436	17436					-0.0009080548219344564
GLSHVDYAL	9	Unmodified	_GLSHVDYAL_					0	0	0		ENST00000469042.5_1_3:132298334-132378619:-|nuORF;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11;nc|ENSG00000240303|Q709F0-3|ACAD11	ENST00000469042.5_1_3:132298334-132378619:-|nuORF	ENST00000469042.5_1_3:132298334-132378619:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	488.1500549316406	2	487.750724	973.486896	-0.87501	-0.00042679	-0.32039	-0.00015627	-1.1954	-0.00058306	487.75075699967505	56.279	0.61186	57.029	56.745	57.356	0.75015					28	11	4	0	0	0	0.16229	1	21258	21258		48.346	14.243	1	6024300			17815	9772	12849	12945	17437	17437					-0.0009080548219344564
GLSILLKMMQ	10	Unmodified	_GLSILLKMMQ_					0	0	0		ENST00000555877.5_1_12:25254226-25254886:+|nuORF	ENST00000555877.5_1_12:25254226-25254886:+|nuORF	ENST00000555877.5_1_12:25254226-25254886:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	378.9815673828125	3	378.552217	1132.63482	0.87455	0.00033106	3.2713	0.0012383	4.1458	0.0015694	378.8868871043757	45.017	0.30455	45.017	44.827	45.132	0					6	5	2	0	0	0	0.52461	1	15771	15771		24.882	5.2556	1	587620			17816	13435	12850	12946	17438	17438					0.07381046455793694
GLSKMIQTPD	10	Unmodified	_GLSKMIQTPD_					0	0	0		ENSG00000106305|ENST00000223029|AIMP2	ENSG00000106305|ENST00000223029|AIMP2	ENSG00000106305|ENST00000223029|AIMP2	MULTI-SECPEP	A375_MHC_IP_R1	1	364.59844970703125	3	363.858475	1088.5536	0.13239	4.8172E-05	2.1263	0.00077366	2.2587	0.00082183	363.8569977812912	34.409	0.35322	34.409	34.154	34.507	0					16	6	5	0	0	0	0.91556	1	11244	11244		5.7834	0	1	1605200			17817	2683	12851	12947	17439	17439					0.012860620173796633
GLSLPVHSW	9	Unmodified	_GLSLPVHSW_					0	0	0			REV__ENST00000361505.9_1_14:20944805-20945120:+|nuORF	REV__ENST00000361505.9_1_14:20944805-20945120:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	497.6474609375	2	498.269084	994.523616	-0.45399	-0.00022621	0.32055	0.00015972	-0.13344	-6.649E-05	498.2688659647045	76.947	0.86401	76.947	76.673	77.537	0					36	16	3	0	0	0	0.55359	1	28247	28247		21.747	8.2388	1	7910700	+		17818	23915	12852	12948	17440	17440					0.02613491134366086
GLSLQEFGL	9	Unmodified	_GLSLQEFGL_					0	0	0			REV__ENSG00000187714|ENST00000374115|SLC18A3	REV__ENSG00000187714|ENST00000374115|SLC18A3	MULTI-MSMS	A375_MHC_IP_R1	1	482.66082763671875	2	482.260925	962.507297	-0.29223	-0.00014093	0.22354	0.0001078	-0.068688	-3.3126E-05	482.26095011733685	101.38	0.70816	101.38	101.04	101.75	0					21	13	3	0	0	0	0.27715	1	37250	37250		32.305	2.0807	1	1992500	+		17819	22040	12853	12949	17441	17441					0.02454365177618456
GLSNLTHVL	9	Unmodified	_GLSNLTHVL_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	MSMS	A375_MHC_IP_R1	1	477.6739501953125	2	477.274367	952.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.78	1	75.78	75.28	76.28	0								0	0	0	0.13141	1	27612	27612		32.305	5.4218	1				17820	8685	12854	12950	17442	17442					0.056014737887949195
GLSNWLEDP	9	Unmodified	_GLSNWLEDP_					0	0	0			REV__ENSG00000162694|ENST00000370114|EXTL2	REV__ENSG00000162694|ENST00000370114|EXTL2	MULTI-MSMS	A375_MHC_IP_R1	1	515.6639404296875	2	515.745639	1029.47673	-0.43397	-0.00022382	-0.0097436	-5.0252E-06	-0.44372	-0.00022884	515.7452600385432	72.702	0.50654	72.702	72.474	72.98	0					11	9	2	0	0	0	0.55818	1	26485	26485		16.942	1.0951	1	782270	+		17821	20293	12855	12951	17443	17443					-0.036834132074318404
GLSNWPAGLS	10	Unmodified	_GLSNWPAGLS_					0	0	0			REV__ENST00000465160.2_1_9:140286885-140287641:-|nuORF	REV__ENST00000465160.2_1_9:140286885-140287641:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	501.6556091308594	2	501.256174	1000.49779	-1.0394	-0.00052098	-0.26704	-0.00013386	-1.3064	-0.00065484	501.25615766056796	56.785	0.76606	57.535	57.152	57.918	0.75015					25	14	3	0	0	0	0.6806	1	21492	21492		14.838	2.3067	1	4242700	+		17822	25021	12856	12952	17444	17444					-0.0024340310790194053
GLSPDNPFL	9	Unmodified	_GLSPDNPFL_					0	0	0		ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	MULTI-SECPEP	A375_MHC_IP_R1	1	959.8482055664062	1	959.483273	958.475997	0.29493	0.00028298	-0.2019	-0.00019372	0.093026	8.9257E-05	959.4830483869079	107.04	0.40855	107.04	106.83	107.24	0					12	7	2	0	0	0	0.10103	1	39301	39301		71.922	8.3594	1	1357800			17823	9223	12857	12953	17445	17445					-0.004902078564896328
GLSPEIHTL	9	Unmodified	_GLSPEIHTL_					0	0	0		ENST00000495897.2_1_10:75227245-75231333:-|nuORF;nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB	ENST00000495897.2_1_10:75227245-75231333:-|nuORF	ENST00000495897.2_1_10:75227245-75231333:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	484.6658020019531	2	483.766374	965.518196	-0.35026	-0.00016944	-0.78347	-0.00037902	-1.1337	-0.00054846	483.76634992096	59.048	0.50928	59.048	58.786	59.295	0					19	9	3	0	0	0	0.010057	2	21212	21212;21261		125.62	47.64	1	4630600			17824	12714	12858	12954	17446;17447	17446					0.03405767551907957
GLSPEIHTL	9	Unmodified	_GLSPEIHTL_					0	0	0		ENST00000495897.2_1_10:75227245-75231333:-|nuORF;nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB	ENST00000495897.2_1_10:75227245-75231333:-|nuORF	ENST00000495897.2_1_10:75227245-75231333:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	484.1658020019531	2	483.766374	965.518196	-0.87074	-0.00042123	-0.79069	-0.00038251	-1.6614	-0.00080374	483.7663972272308	58.211	0.55782	58.96	58.629	59.187	0.74894					22	10	3	0	0	0	0.016207	1	21991	21991		97.075	19.09	1	2926400			17825	12714	12858	12954	17448	17448					0.03405767551907957
GLSPSIQTL	9	Unmodified	_GLSPSIQTL_					0	0	0		ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF	ENSG00000149923|ENST00000279387|PPP4C	ENSG00000149923|ENST00000279387|PPP4C	MULTI-MSMS	A375_MHC_IP_R1	1	915.939697265625	1	915.514573	914.507297	-0.055041	-5.0391E-05	-0.50326	-0.00046074	-0.5583	-0.00051113	915.5139533535998	83.017	0.55647	83.017	82.772	83.329	0					21	10	3	0	0	0	0.02559	1	30299	30299		78.728	10.647	1	7803000			17826	5832	12859	12955	17449	17449					0.04662365177614447
GLSPSIQTL	9	Unmodified	_GLSPSIQTL_					0	0	0		ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF	ENSG00000149923|ENST00000279387|PPP4C	ENSG00000149923|ENST00000279387|PPP4C	MULTI-MATCH	A375_MHC_IP_R2	2		1	915.514573	914.507297	-0.38648	-0.00035383	0.2372	0.00021716	-0.14928	-0.00013667	915.5146835443002	82.182	0.45934	82.925	82.735	83.195	0.74293	-0.046038	0.0002174	NaN	78.728	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6850300			17827	5832	12859	12955							0.04662365177614447
GLSREIYSADY	11	Unmodified	_GLSREIYSADY_					0	0	0		ENSG00000185483|ENST00000371079|ROR1;nc|ENSG00000185483|Q01973-2|ROR1	ENSG00000185483|ENST00000371079|ROR1	ENSG00000185483|ENST00000371079|ROR1	MULTI-SECPEP	A375_MHC_IP_R2	2	424.6274108886719	3	425.20682	1272.59863	-0.22145	-9.4162E-05	-1.1857	-0.00050416	-1.4071	-0.00059832	425.54037407059354	40.21	0.45631	40.984	40.727	41.183	0.77451					23	8	4	0	0	0	0.98782	1	14872	14872		11.631	2.0874	1	3913700			17828	8670	12860	12956	17450	17450					-0.026764159157210088
GLSRPQPVKL	10	Unmodified	_GLSRPQPVKL_					0	0	0			REV__ENST00000560780.1_2_15:44964301-44966556:-|nuORF	REV__ENST00000560780.1_2_15:44964301-44966556:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	547.9930419921875	2	547.837665	1093.66078	-1.056	-0.00057854	-0.51545	-0.00028238	-1.5715	-0.00086092	547.8372774372053	57.889	0.50401	58.638	58.375	58.879	0.74894					19	9	3	0	0	0	0.85226	1	21841	21841		14.838	10.894	1	1899500	+		17829	26172	12861	12957	17451	17451					0.11769400013940867
GLSSDLQQV	9	Unmodified	_GLSSDLQQV_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F;ENST00000530219.1_1_11:8014470-8016722:+|nuORF	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-MSMS	A375_MHC_IP_R1	1	474.1455993652344	2	473.745639	945.476725	-0.39529	-0.00018727	0.37695	0.00017858	-0.018338	-8.6875E-06	473.7457894518479	63.11	0.564	63.11	62.863	63.427	0					17	10	2	0	0	0	0.03063	1	22815	22815		74.423	16.951	1	2095400			17830	7956	12862	12958	17452	17452					0.0018058679256682808
GLSSDLQQV	9	Unmodified	_GLSSDLQQV_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F;ENST00000530219.1_1_11:8014470-8016722:+|nuORF	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-MSMS	A375_MHC_IP_R2	2	474.14520263671875	2	473.745639	945.476725	-0.66809	-0.0003165	-0.0063757	-3.0205E-06	-0.67446	-0.00031952	473.74561281319893	62.417	0.55993	63.159	62.824	63.383	0.74263					20	10	3	0	0	0	0.012968	1	23648	23648		92.491	27.256	1	3303200			17831	7956	12862	12958	17453	17453					0.0018058679256682808
GLSSLSRVVW	10	Unmodified	_GLSSLSRVVW_					0	0	0			REV__ENST00000566567.1_1_9:138999849-139000686:-|nuORF	REV__ENST00000566567.1_1_9:138999849-139000686:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	369.2889404296875	3	368.545108	1102.61349	0.38325	0.00014125	-0.34802	-0.00012826	0.035236	1.2986E-05	368.54500568672535	43.492	1.3143	44.264	43.775	45.089	0.7724					41	25	3	0	0	0	0.92957	1	16160	16160		3.3196	0.24738	1	1436500	+		17832	26243	12863	12959	17454	17454					0.06629120742968553
GLSSLTTAVP	10	Unmodified	_GLSSLTTAVP_					0	0	0			REV__ENST00000597150.5_1_2:97261350-97297069:-|nuORF	REV__ENST00000597150.5_1_2:97261350-97297069:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	474.1641845703125	2	473.266207	944.517862	-0.45816	-0.00021683	-0.89552	-0.00042382	-1.3537	-0.00064065	473.26599474788577	42.057	1.3708	42.057	41.521	42.891	0					53	26	3	0	0	0	0.51963	2	14668	14668;14683		26.884	8.7373	1	30215000	+		17833	17850	12864	12960	17455;17456	17455					0.04338347832049294
GLSSVVRNV	9	Unmodified	_GLSSVVRNV_					0	0	0		ENSG00000102763|ENST00000379310|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8;nc|ENSG00000102763|A3KMH1-2|VWA8	ENSG00000102763|ENST00000379310|VWA8	ENSG00000102763|ENST00000379310|VWA8	MULTI-MSMS	A375_MHC_IP_R2	2	466.20263671875	2	465.771991	929.529429	-0.71003	-0.00033071	0.11616	5.4104E-05	-0.59387	-0.00027661	465.7720539612944	30.19	0.50732	30.908	30.809	31.317	0.71857					16	9	2	0	0	0	0.11296	1	10639	10639		48.346	2.6462	1	1764200			17834	2391	12865	12961	17457	17457					0.06184589646045424
GLSTEGIYRV	10	Unmodified	_GLSTEGIYRV_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47440583-47491508:+|nuORF	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-SECPEP	A375_MHC_IP_R1	1	547.9940795898438	2	547.795663	1093.57677	-0.60605	-0.00033199	0.22809	0.00012495	-0.37796	-0.00020705	547.7957956373749	58.523	0.76054	58.523	58.126	58.887	0					49	14	6	0	0	0	0.018542	1	21002	21002		125.04	38.706	1	63593000			17835	6391	12866	12962	17458	17458					0.03372824126358864
GLSTEGIYRV	10	Unmodified	_GLSTEGIYRV_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47440583-47491508:+|nuORF	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-SECPEP	A375_MHC_IP_R2	2	547.9930419921875	2	547.795663	1093.57677	-1.0851	-0.0005944	0.12517	6.8566E-05	-0.95991	-0.00052584	547.7956926118903	57.698	0.70935	58.447	58.12	58.829	0.74894					46	13	5	0	0	0	0.01356	1	21841	21841		121.53	39.005	1	78012000			17836	6391	12866	12962	17459	17459					0.03372824126358864
GLSTVTLVG	9	Unmodified	_GLSTVTLVG_					0	0	0		nc|ENSG00000162493|Q86YL7-5|PDPN;nc|ENSG00000162493|Q86YL7-6|PDPN;ENSG00000162493|ENST00000621990|PDPN;nc|ENSG00000162493|Q86YL7-2|PDPN;nc|ENSG00000162493|Q86YL7-4|PDPN;nc|ENSG00000162493|Q86YL7-3|PDPN	nc|ENSG00000162493|Q86YL7-5|PDPN	nc|ENSG00000162493|Q86YL7-5|PDPN	MULTI-MSMS	A375_MHC_IP_R1	1	846.3626708984375	1	846.49311	845.485833	-0.37165	-0.0003146	-0.19795	-0.00016756	-0.5696	-0.00048216	846.4929711573496	89.705	0.50523	89.705	89.476	89.981	0					16	9	2	0	0	0	0.0090669	1	32925	32925		100.37	22.222	1	5049700			17837	6539	12867	12963	17460	17460					0.056909801489041456
GLSVIIPHV	9	Unmodified	_GLSVIIPHV_					0	0	0		ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	MULTI-SECPEP	A375_MHC_IP_R1	1	467.64666748046875	2	467.789653	933.564752	-0.40015	-0.00018718	0.28067	0.00013129	-0.11948	-5.589E-05	467.78977837383013	95.273	0.40826	95.273	95.007	95.415	0					12	7	2	0	0	0	0.23974	1	35043	35043		49.669	21.182	1	1102100			17838	6453	12868	12964	17461	17461					0.09531252173849225
GLSVIIPHV	9	Unmodified	_GLSVIIPHV_					0	0	0		ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	MULTI-SECPEP	A375_MHC_IP_R2	2	468.1893615722656	2	467.789653	933.564752	-0.4166	-0.00019488	0.2672	0.00012499	-0.1494	-6.989E-05	467.7896602003511	94.309	0.35509	95.054	94.919	95.274	0.74474					9	6	2	0	0	0	0.10216	1	35856	35856		67.035	36.811	1	1253600			17839	6453	12868	12964	17462	17462					0.09531252173849225
GLSVYKDHQTI	11	Unmodified	_GLSVYKDHQTI_					0	0	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3;MCM3|p.D222Efs*39|1|0.26|ENSG00000112118|chr6:52279465-52279465|A/-|frameshift_variant	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-MSMS	A375_MHC_IP_R1	1	421.2909851074219	3	420.890944	1259.651	0.040795	1.717E-05	0.57304	0.00024119	0.61383	0.00025836	421.2255497793201	24.991	0.60722	24.991	24.647	25.255	0					25	11	4	0	0	0	0.72713	1	7244	7244		11.631	2.3876	1	8683200			17840	3050	12869	12965	17463	17463					0.031561672178895606
GLSVYKDHQTI	11	Unmodified	_GLSVYKDHQTI_					0	0	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3;MCM3|p.D222Efs*39|1|0.26|ENSG00000112118|chr6:52279465-52279465|A/-|frameshift_variant	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	420.890944	1259.651	0.040795	1.717E-05	0.57304	0.00024119	0.61383	0.00025836	421.2255497793201	24.991	0.60722	24.991	24.647	25.255	0	-0.022051	0.00013054	NaN	11.631	25	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8683200			17841	3050	12869	12965							0.031561672178895606
GLTAIPQAL	9	Unmodified	_GLTAIPQAL_					0	0	0		ENSG00000181045|ENST00000361193|SLC26A11	ENSG00000181045|ENST00000361193|SLC26A11	ENSG00000181045|ENST00000361193|SLC26A11	MULTI-SECPEP	A375_MHC_IP_R1	1	441.6761779785156	2	442.26601	882.517468	0.34577	0.00015292	-0.18802	-8.3154E-05	0.15775	6.9768E-05	442.26578481725244	48.727	0.35448	48.727	48.476	48.831	0					10	6	2	0	0	0	0.55359	1	17236	17236		28.487	13.649	1	866180			17842	8332	12870	12966	17464	17464					0.07150972902832109
GLTAIPQAL	9	Unmodified	_GLTAIPQAL_					0	0	0		ENSG00000181045|ENST00000361193|SLC26A11	ENSG00000181045|ENST00000361193|SLC26A11	ENSG00000181045|ENST00000361193|SLC26A11	MULTI-MATCH	A375_MHC_IP_R2	2		2	442.26601	882.517468	-0.22179	-9.8092E-05	-0.23071	-0.00010204	-0.4525	-0.00020013	442.26590818723736	47.776	0.35587	48.537	48.326	48.682	0.76128	-0.094702	-2.0907E-05	NaN	28.487	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	772410			17843	8332	12870	12966							0.07150972902832109
GLTDVIRDV	9	Unmodified	_GLTDVIRDV_					0	0	0		ENSG00000155034|ENST00000382368|FBXL18	ENSG00000155034|ENST00000382368|FBXL18	ENSG00000155034|ENST00000382368|FBXL18	MULTI-SECPEP	A375_MHC_IP_R1	1	494.6768798828125	2	494.277106	986.53966	-0.37272	-0.00018423	-0.85026	-0.00042026	-1.223	-0.00060449	494.2768908930305	87.732	0.66122	87.732	87.39	88.052	0					27	12	3	0	0	0	0.14554	1	32217	32217		57.249	13.391	1	3343400			17844	6120	12871	12967	17465	17465					0.04585152580614249
GLTDVIRDV	9	Unmodified	_GLTDVIRDV_					0	0	0		ENSG00000155034|ENST00000382368|FBXL18	ENSG00000155034|ENST00000382368|FBXL18	ENSG00000155034|ENST00000382368|FBXL18	MULTI-SECPEP	A375_MHC_IP_R2	2	494.677001953125	2	494.277106	986.53966	-0.36407	-0.00017995	-0.57976	-0.00028656	-0.94383	-0.00046651	494.2769753683151	86.954	0.71071	87.687	87.306	88.017	0.733					26	13	3	0	0	0	0.10495	1	33039	33039		65.474	13.205	1	3847600			17845	6120	12871	12967	17466	17466					0.04585152580614249
GLTEALHFV	9	Unmodified	_GLTEALHFV_					0	0	0		ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	MULTI-MSMS	A375_MHC_IP_R1	1	493.70513916015625	2	493.768917	985.523281	-0.48698	-0.00024045	0.54201	0.00026763	0.055039	2.7176E-05	493.7690593439031	95.018	1.015	95.018	94.599	95.614	0					47	19	4	0	0	0	0.1978	1	34844	34844		38.151	16.405	1	16703000			17846	3992	12872	12968	17467	17467					0.029940714145254788
GLTEALHFV	9	Unmodified	_GLTEALHFV_					0	0	0		ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	MULTI-MSMS	A375_MHC_IP_R2	2	493.7049560546875	2	493.768917	985.523281	-0.30554	-0.00015087	0.24173	0.00011936	-0.063814	-3.1509E-05	493.7689700604089	94.08	1.0624	94.824	94.515	95.577	0.74474					36	20	3	0	0	0	0.27971	1	35893	35893		32.117	7.4431	1	14652000			17847	3992	12872	12968	17468	17468					0.029940714145254788
GLTEGIWQL	9	Unmodified	_GLTEGIWQL_					0	0	0		UIMC1|p.T189Nfs*2|1|0.62|ENSG00000087206|chr5:176969189-176969190|-/T|frameshift_variant;nc|ENSG00000087206|Q96RL1-2|UIMC1;nc|ENSG00000087206|Q96RL1-3|UIMC1;ENSG00000087206|ENST00000511320|UIMC1	UIMC1|p.T189Nfs*2|1|0.62|ENSG00000087206|chr5:176969189-176969190|-/T|frameshift_variant	UIMC1|p.T189Nfs*2|1|0.62|ENSG00000087206|chr5:176969189-176969190|-/T|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	509.1737976074219	2	508.7742	1015.53385	0.067072	3.4125E-05	-0.50052	-0.00025465	-0.43345	-0.00022053	508.77391442303065	126.99	0.25111	126.99	126.86	127.11	0					8	4	2	0	0	0	0.0022313	1	48617	48617		141.83	26.135	1	10276000			17848	1862	12873	12969	17469	17469					0.02670054068948957
GLTEGIWQL	9	Unmodified	_GLTEGIWQL_					0	0	0		UIMC1|p.T189Nfs*2|1|0.62|ENSG00000087206|chr5:176969189-176969190|-/T|frameshift_variant;nc|ENSG00000087206|Q96RL1-2|UIMC1;nc|ENSG00000087206|Q96RL1-3|UIMC1;ENSG00000087206|ENST00000511320|UIMC1	UIMC1|p.T189Nfs*2|1|0.62|ENSG00000087206|chr5:176969189-176969190|-/T|frameshift_variant	UIMC1|p.T189Nfs*2|1|0.62|ENSG00000087206|chr5:176969189-176969190|-/T|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	509.1739501953125	2	508.7742	1015.53385	-0.71365	-0.00036308	0.59138	0.00030088	-0.12226	-6.2203E-05	508.77445671337676	126.6	0.25298	126.87	126.76	127.01	0.2734					7	4	2	0	0	0	0.0022313	1	49563	49563		141.83	26.135	1	5990900			17849	1862	12873	12969	17470	17470					0.02670054068948957
GLTGQRLLGV	10	Unmodified	_GLTGQRLLGV_					0	0	0		nc|ENSG00000100461|Q86U06-4|RBM23;nc|ENSG00000100461|Q86U06-5|RBM23;nc|ENSG00000100461|Q86U06-2|RBM23;ENSG00000100461|ENST00000359890|RBM23;ENST00000556186.5_1_14:23373460-23374730:-|nuORF;nc|ENSG00000100461|Q86U06-3|RBM23;ENST00000557667.5_1_14:23373372-23380602:-|nuORF	nc|ENSG00000100461|Q86U06-4|RBM23	nc|ENSG00000100461|Q86U06-4|RBM23	MULTI-SECPEP	A375_MHC_IP_R1	1	507.1657409667969	2	507.308741	1012.60293	-0.37406	-0.00018976	1.2988	0.00065888	0.92471	0.00046911	507.309501607471	68.75	0.60709	68.75	68.412	69.02	0					18	11	2	0	0	0	0.22519	1	24904	24904		51.415	23.786	1	1623900			17850	2181	12874	12970	17471	17471					0.0971313808852301
GLTHGINFAV	10	Unmodified	_GLTHGINFAV_					0	0	0		ENSG00000198825|ENST00000650623|INPP5F;nc|ENSG00000198825|Q9Y2H2-4|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MULTI-SECPEP	A375_MHC_IP_R2	2	515.179443359375	2	514.779816	1027.54508	-0.8199	-0.00042207	-0.56514	-0.00029092	-1.385	-0.00071299	514.7795181715409	74.653	0.9134	75.39	75.009	75.922	0.73752					21	17	2	0	0	0	0.6774	1	28361	28361		27.629	11.782	1	1788400			17851	9337	12875	12971	17472	17472					0.03240876163090434
GLTIFSFKV	9	Unmodified	_GLTIFSFKV_					0	0	0			REV__ENSG00000116991|ENST00000674635|SIPA1L2	REV__ENSG00000116991|ENST00000674635|SIPA1L2	MULTI-MSMS	A375_MHC_IP_R1	1	506.2156066894531	2	506.29731	1010.58007	-0.36633	-0.00018547	0.5434	0.00027512	0.17707	8.965E-05	506.2973009505378	96.242	1.3185	96.242	95.565	96.883	0					57	25	4	0	0	0	0.63811	1	35146	35146		12.532	3.1841	1	7302300	+		17852	17986	12876	12972	17473	17473					0.07520118971046941
GLTQVQDTQPL	11	Unmodified	_GLTQVQDTQPL_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	A375_MHC_IP_R1	1	400.1452941894531	3	400.547065	1198.61937	-0.40498	-0.00016221	1.1574	0.00046358	0.75237	0.00030136	400.5474434039222	31.338	1.265	31.338	30.351	31.616	0					36	24	2	0	0	0	0.94168	1	9852	9852		5.8681	0	1	2986000	+		17853	19347	12877	12973	17474	17474					0.028001744639595927
GLTRYNGIV	9	Unmodified	_GLTRYNGIV_					0	0	0			REV__nc|ENSG00000158604|Q7Z7H5-2|TMED4	REV__nc|ENSG00000158604|Q7Z7H5-2|TMED4	MULTI-SECPEP	A375_MHC_IP_R2	2	497.1793518066406	2	496.779816	991.545079	-0.4922	-0.00024451	0.38639	0.00019195	-0.10581	-5.2565E-05	496.7797220401393	64.901	0.55954	65.639	65.308	65.867	0.73811					15	10	2	0	0	0	0.47368	1	24620	24620		14.838	0	1	1827600	+		17854	27311	12878	12974	17475	17475					0.0489687616310448
GLTSAIQAV	9	Unmodified	_GLTSAIQAV_					0	0	0		ENSG00000162419|ENST00000373816|GMEB1;nc|ENSG00000162419|Q9Y692|GMEB1	ENSG00000162419|ENST00000373816|GMEB1	ENSG00000162419|ENST00000373816|GMEB1	MULTI-SECPEP	A375_MHC_IP_R2	2	429.9865417480469	2	430.247818	858.481082	-0.21589	-9.2884E-05	-0.19993	-8.6018E-05	-0.41581	-0.0001789	430.2476340099183	76.779	0.25268	77.519	77.352	77.604	0.74052					9	4	3	0	0	0	0.3607	1	29132	29132		26.884	6.43	1	1254200			17855	6532	12879	12975	17476	17476					0.04618096006140604
GLTTILKNV	9	Unmodified	_GLTTILKNV_					0	0	0		nc|ENSG00000196712|P21359-5|NF1;NF1|p.V341Cfs*12|1|0.39|ENSG00000196712|chr17:31200552-31200553|-/T|frameshift_variant;NF1|p.C383Yfs*10|1|0.5|ENSG00000196712|chr17:31201116-31201123|TTTCTTGC/-|frameshift_variant;nc|ENSG00000196712|P21359-3|NF1;NF1|p.I679Dfs*21|1|0.89|ENSG00000196712|chr17:31226459-31226460|-/C|frameshift_variant;NF1|p.P698Lfs*50|1|0.76|ENSG00000196712|chr17:31226524-31226524|C/-|frameshift_variant;NF1|p.Y1169Sfs*22|1|0.87|ENSG00000196712|chr17:31233006-31233016|AGGTTACCACA/-|frameshift_variant;nc|ENSG00000196712|P21359-4|NF1;NF1|p.E2155Sfs*45|1|0.21|ENSG00000196712|chr17:31337403-31337403|G/-|frameshift_variant;nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1	nc|ENSG00000196712|P21359-5|NF1	nc|ENSG00000196712|P21359-5|NF1	MULTI-SECPEP	A375_MHC_IP_R1	1	480.20001220703125	2	479.800217	957.585882	-0.30561	-0.00014663	-4.0757	-0.0019555	-4.3813	-0.0021022	479.8002185588089	79.214	0.61298	79.214	78.909	79.522	0					27	11	4	0	0	0	0.10103	1	28972	28972		53.833	27.565	1	1574300			17856	14839	12880	12976	17477	17477					0.10539217482710228
GLTVRTPV	8	Unmodified	_GLTVRTPV_					0	0	0		ENST00000461200.5_1_11:2336617-2336857:+|nuORF	ENST00000461200.5_1_11:2336617-2336857:+|nuORF	ENST00000461200.5_1_11:2336617-2336857:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	422.1583251953125	2	421.758352	841.502152	-0.16021	-6.7569E-05	0.45724	0.00019284	0.29703	0.00012527	421.758471528336	39.925	0.40722	39.925	39.744	40.151	0					16	7	3	0	0	0	0.55873	1	13700	13700		41.84	0	1	3406500			17857	12181	12881	12977	17478	17478					0.07506106105665822
GLTVSYANYF	10	Unmodified	_GLTVSYANYF_					0	0	0		nc|ENSG00000140948|Q8WYQ9|ZCCHC14;nc|ENSG00000140948|Q8WYQ9-2|ZCCHC14;ENSG00000140948|ENST00000671377|ZCCHC14	nc|ENSG00000140948|Q8WYQ9|ZCCHC14	nc|ENSG00000140948|Q8WYQ9|ZCCHC14	MSMS	A375_MHC_IP_R2	2	567.7371215820312	2	567.776939	1133.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.997	1	55.748	55.248	56.248	0.75075								0	0	0	0.15105	1	20766	20766		15.847	1.0089	1				17858	5196	12882	12978	17479	17479					-0.02210267139230382
GLTWLKYGVFV	11	Unmodified	_GLTWLKYGVFV_					0	0	0			REV__tr|U7SM42|U7SM42_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02073PE=3SV=1	REV__tr|U7SM42|U7SM42_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02073PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	642.263427734375	2	641.863349	1281.71214	-0.48166	-0.00030916	-0.45131	-0.00028968	-0.93297	-0.00059884	641.8633888108938	97.721	0.55759	97.721	97.338	97.896	0					16	10	2	0	0	0	0.99331	1	35896	35896		5.2969	0	1	1914000	+		17859	28288	12883	12979	17480	17480					0.0825572398798613
GLVAGGIIGA	10	Unmodified	_GLVAGGIIGA_					0	0	0		ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	MULTI-MSMS	A375_MHC_IP_R1	1	829.2955932617188	1	827.498529	826.491253	-0.14555	-0.00012044	-0.1425	-0.00011792	-0.28805	-0.00023836	827.498345180692	92.458	1.066	92.458	92.11	93.176	0					41	20	3	0	0	0	0.067777	1	33995	33995		70.865	14.323	1	22362000			17860	3186	12884	12980	17481	17481					0.07106703731381003
GLVAGGIIGA	10	Unmodified	_GLVAGGIIGA_					0	0	0		ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	MULTI-MATCH	A375_MHC_IP_R2	2		1	827.498529	826.491253	-0.69475	-0.00057491	0.052833	4.3719E-05	-0.64192	-0.00053119	827.4984959624059	91.616	0.81017	92.351	92.021	92.831	0.7345	-0.053688	9.1376E-05	NaN	70.865	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29487000			17861	3186	12884	12980							0.07106703731381003
GLVAGVVTGV	10	Unmodified	_GLVAGVVTGV_					0	0	0			REV__tr|U7SSZ7|U7SSZ7_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01653PE=3SV=1	REV__tr|U7SSZ7|U7SSZ7_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01653PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	436.6659851074219	2	436.26601	870.517468	-0.083967	-3.6632E-05	0.10867	4.7408E-05	0.0247	1.0776E-05	436.26599903191493	46.975	0.91488	47.737	47.361	48.275	0.76128					29	17	3	0	0	0	0.38068	1	17573	17573		50.855	21.773	1	7694500	+		17862	28453	12885	12981	17482	17482					0.07702972902859528
GLVCLWWLHPR	11	Unmodified	_GLVCLWWLHPR_					0	0	0			REV__CD27|p.P6L|1|0.53|ENSG00000139193|chr12:6445112-6445112|C/T|missense_variant	REV__CD27|p.P6L|1|0.53|ENSG00000139193|chr12:6445112-6445112|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	690.4244384765625	2	690.373892	1378.73323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.86	1	108.86	108.36	109.36	0								0	0	0	0.1624	1	39931	39931		6.2058	0.47393	1		+		17863	15610	12886	12982	17483	17483					0.05901410815840791
GLVDEKALAQA	11	Unmodified	_GLVDEKALAQA_					0	0	0		nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2;ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1;ENST00000511907.1_1_4:1208072-1210006:-|nuORF;ENST00000513884.1_1_5:97912076-97912961:+|nuORF	nc|ENSG00000175029|P56545|CTBP2	nc|ENSG00000175029|P56545|CTBP2	MULTI-SECPEP	A375_MHC_IP_R1	1	558.208740234375	2	557.808771	1113.60299	-0.36009	-0.00020086	0.83728	0.00046704	0.47719	0.00026618	557.8090875227057	54.319	0.96165	54.319	53.605	54.567	0					31	18	2	0	0	0	0.037235	1	19338	19338		108.26	68.023	1	11715000			17864	7924	12887	12983	17484	17484					0.050730932978467536
GLVDEKALAQA	11	Unmodified	_GLVDEKALAQA_					0	0	0		nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2;ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1;ENST00000511907.1_1_4:1208072-1210006:-|nuORF;ENST00000513884.1_1_5:97912076-97912961:+|nuORF	nc|ENSG00000175029|P56545|CTBP2	nc|ENSG00000175029|P56545|CTBP2	MULTI-SECPEP	A375_MHC_IP_R2	2	558.2080078125	2	557.808771	1113.60299	-1.2611	-0.00070343	0.49364	0.00027536	-0.76742	-0.00042807	557.8089439045966	53.566	0.56292	54.317	54.046	54.609	0.75105					25	10	3	0	0	0	0.024316	1	20190	20190		118.21	70.615	1	16024000			17865	7924	12887	12983	17485	17485					0.050730932978467536
GLVDEQQKV	9	Unmodified	_GLVDEQQKV_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-SECPEP	A375_MHC_IP_R1	1	508.6742858886719	2	508.274564	1014.53457	-0.46743	-0.00023758	-2.692	-0.0013683	-3.1595	-0.0016059	508.27436707504194	32.083	0.51379	32.083	31.819	32.333	0					16	9	2	0	0	0	0.4261	1	10337	10337		37.974	11.09	1	3280100			17866	3317	12888	12984	17486	17486					0.02788848718000736
GLVDIGETL	9	Unmodified	_GLVDIGETL_					0	0	0		nc|ENSG00000197620|Q8TE69-2|EOLA1;ENSG00000197620|ENST00000393985|EOLA1;ENSG00000197021|ENST00000370406|EOLA2	nc|ENSG00000197620|Q8TE69-2|EOLA1	nc|ENSG00000197620|Q8TE69-2|EOLA1	MSMS	A375_MHC_IP_R2	2	458.6608581542969	2	458.752933	915.491313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.182	1	82.925	82.425	83.425	0.74293								0	0	0	0.1521	1	31217	31217		18.135	0	1				17867	9105	12889	12985	17487	17487					0.030186589407207975
GLVDIGETL	9	Unmodified	_GLVDIGETL_					0	0	0		nc|ENSG00000197620|Q8TE69-2|EOLA1;ENSG00000197620|ENST00000393985|EOLA1;ENSG00000197021|ENST00000370406|EOLA2	nc|ENSG00000197620|Q8TE69-2|EOLA1	nc|ENSG00000197620|Q8TE69-2|EOLA1	MSMS	A375_MHC_IP_R2	2	458.5150451660156	2	458.752933	915.491313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.291	1	83.034	82.534	83.534	0.74293								0	0	0	0.1521	1	31259	31259		18.135	0	1				17868	9105	12889	12985	17488	17488					0.030186589407207975
GLVDKLQAL	9	Unmodified	_GLVDKLQAL_					0	0	0		nc|ENSG00000005194|Q6FI81-3|CIAPIN1;ENSG00000005194|ENST00000394391|CIAPIN1;ENST00000566284.1_1_16:57467902-57474840:-|nuORF	nc|ENSG00000005194|Q6FI81-3|CIAPIN1	nc|ENSG00000005194|Q6FI81-3|CIAPIN1	MULTI-SECPEP	A375_MHC_IP_R2	2	479.19207763671875	2	478.792392	955.570232	-0.53506	-0.00025618	-0.1159	-5.549E-05	-0.65096	-0.00031167	478.7922819466902	83.083	1.1174	83.822	83.494	84.611	0.73962					40	21	3	0	0	0	0.027983	1	31540	31540		92.491	23.387	1	7787000			17869	887	12890	12986	17489	17489					0.0906693096563913
GLVDQLVKA	9	Unmodified	_GLVDQLVKA_					0	0	0		ENSG00000031698|ENST00000234677|SARS1;ENST00000482384.1_1_1:109756587-109756749:+|nuORF	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MULTI-MSMS	A375_MHC_IP_R1	1	472.1843566894531	2	471.784567	941.554582	-0.22478	-0.00010605	1.5809	0.00074583	1.3561	0.00063978	471.78455249341397	78.779	1.0117	78.779	78.099	79.111	0					46	19	4	0	0	0	0.0054362	1	28722	28722		134.3	56.146	1	9537500			17870	1114	12891	12987	17490	17490					0.0814664444861819
GLVDQLVKA	9	Unmodified	_GLVDQLVKA_					0	0	0		ENSG00000031698|ENST00000234677|SARS1;ENST00000482384.1_1_1:109756587-109756749:+|nuORF	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	472.1841735839844	2	471.784567	941.554582	-0.57812	-0.00027275	0.31103	0.00014674	-0.26709	-0.00012601	471.7845018559036	77.916	0.56259	78.658	78.315	78.878	0.74294					22	10	3	0	0	0	0.011405	1	29547	29547		122.18	54.098	1	8224600			17871	1114	12891	12987	17491	17491					0.0814664444861819
GLVEGITAL	9	Unmodified	_GLVEGITAL_					0	0	0		ENST00000502904.5_1_5:179045169-179045340:-|nuORF	ENST00000502904.5_1_5:179045169-179045340:-|nuORF	ENST00000502904.5_1_5:179045169-179045340:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	872.8623657226562	1	872.50876	871.501483	-0.11629	-0.00010146	-0.53006	-0.00046248	-0.64635	-0.00056394	872.5082614897651	110.26	0.55672	110.26	109.99	110.54	0					18	10	2	0	0	0	0.064992	1	40479	40479		68.081	33.978	1	3278200			17872	12801	12892	12988	17492	17492					0.060592666659431416
GLVEQLYDL	9	Unmodified	_GLVEQLYDL_					0	0	0		ENST00000477976.5_1_1:880076-889593:-|nuORF;ENST00000452600.1_1_2:130987586-130988813:+|nuORF;ENSG00000188976|ENST00000327044|NOC2L	ENST00000477976.5_1_1:880076-889593:-|nuORF;ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	MULTI-MSMS	A375_MHC_IP_R1	1	525.680419921875	2	525.279315	1048.54408	-0.25416	-0.00013351	1.6215	0.00085171	1.3673	0.00071821	525.2803219498569	126.18	0.9057	126.18	125.65	126.56	0					23	17	3	0	0	0	0.0011619	1	48184	48184		152.41	59.921	1	18901000			17873	12454;8948	12893	12989	17493	17493					0.021746170035157775
GLVEQLYDL	9	Unmodified	_GLVEQLYDL_					0	0	0		ENST00000477976.5_1_1:880076-889593:-|nuORF;ENST00000452600.1_1_2:130987586-130988813:+|nuORF;ENSG00000188976|ENST00000327044|NOC2L	ENST00000477976.5_1_1:880076-889593:-|nuORF;ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	MULTI-MSMS	A375_MHC_IP_R2	2	525.6783447265625	2	525.279315	1048.54408	-0.44398	-0.00023322	-0.16457	-8.6444E-05	-0.60855	-0.00031966	525.27917445407	125.75	0.35385	126.05	125.82	126.18	0.2951					12	6	3	0	0	0	0.0028027	1	49136	49136		139.14	46.647	1	16600000			17874	12454;8948	12893	12989	17494	17494					0.021746170035157775
GLVGAFPRA	9	Unmodified	_GLVGAFPRA_					0	0	0			REV__ENST00000521198.6_1_8:67624706-67624820:+|nuORF	REV__ENST00000521198.6_1_8:67624706-67624820:+|nuORF	MSMS	A375_MHC_IP_R1	1	444.28570556640625	2	444.25852	886.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.353	1	71.353	70.853	71.853	0								0	0	0	0.15486	1	25921	25921		6.7232	0	1		+		17875	25716	12894	12990	17495	17495					0.0546952582551512
GLVGAFPRA	9	Unmodified	_GLVGAFPRA_					0	0	0			REV__ENST00000521198.6_1_8:67624706-67624820:+|nuORF	REV__ENST00000521198.6_1_8:67624706-67624820:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	444.2855529785156	2	444.25852	886.502486	-0.32745	-0.00014547	-1.2709	-0.00056462	-1.5984	-0.00071009	444.2591225208836	70.435	0.75964	71.169	70.693	71.453	0.73421					15	14	2	0	0	0	0.70307	1	26788	26788		6.7232	0.96273	1	727720	+		17876	25716	12894	12990	17496	17496					0.0546952582551512
GLVGSLQEV	9	Unmodified	_GLVGSLQEV_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000467878.1_1_2:112638162-112638411:-|nuORF;ENST00000489177.1_1_2:112630836-112638411:-|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MSMS	A375_MHC_IP_R1	1	451.6526794433594	2	451.2531	900.491647	-0.36777	-0.00016596	0.050832	2.2938E-05	-0.31694	-0.00014302	451.253059697235	84.618	0.71395	84.618	84.241	84.955	0					32	13	3	0	0	0	0.0099105	1	30950	30950		118.89	0	1	12950000			17877	6006	12895	12991	17497	17497					0.03742078660570769
GLVGSLQEV	9	Unmodified	_GLVGSLQEV_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000467878.1_1_2:112638162-112638411:-|nuORF;ENST00000489177.1_1_2:112630836-112638411:-|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MSMS	A375_MHC_IP_R2	2	451.65240478515625	2	451.2531	900.491647	-0.21908	-9.8863E-05	-0.10557	-4.7638E-05	-0.32465	-0.0001465	451.253001012793	83.743	0.82039	84.483	84.099	84.92	0.73962					34	15	3	0	0	0	0.0019764	1	31792	31792		144.35	13.083	1	14463000			17878	6006	12895	12991	17498	17498					0.03742078660570769
GLVGVIFIL	9	Unmodified	_GLVGVIFIL_					0	0	0		GPR141|p.S37F|1|0.09|ENSG00000187037|chr7:37740503-37740503|C/T|missense_variant	GPR141|p.S37F|1|0.09|ENSG00000187037|chr7:37740503-37740503|C/T|missense_variant	GPR141|p.S37F|1|0.09|ENSG00000187037|chr7:37740503-37740503|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	931.32421875	1	930.602266	929.59499	-0.078668	-7.3209E-05	-0.11485	-0.00010688	-0.19351	-0.00018009	930.6019007916316	137.5	0.20543	137.58	137.45	137.66	0.083969					6	3	2	0	0	0	0.77244	1	53937	53937		5.2307	0	1	2521700			17879	14064	12896	12992	17499	17499					0.12737610839030822
GLVGYWMM	8	Unmodified	_GLVGYWMM_					0	0	0			REV__ENSG00000077044|ENST00000264057|DGKD	REV__ENSG00000077044|ENST00000264057|DGKD	MULTI-SECPEP	A375_MHC_IP_R2	2	479.1793212890625	2	478.722067	955.429581	-0.54555	-0.00026117	0.13646	6.5328E-05	-0.40909	-0.00019584	478.72207660807436	73.353	2.2387	74.088	73.226	75.465	0.73541					68	43	2	0	0	0	0.95327	1	27850	27850		6.3541	0	1	947370	+		17880	16685	12897	12993	17500	17500					-0.04991687283768442
GLVHCCYEIY	10	Unmodified	_GLVHCCYEIY_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-SECPEP	A375_MHC_IP_R2	2	600.6636962890625	2	600.264827	1198.5151	-1.0776	-0.00064686	-1.5572	-0.00093473	-2.6348	-0.0015816	600.2635713022368	53.036	0.65961	53.787	53.538	54.198	0.75105					16	12	2	0	0	0	0.89109	1	20010	20010		7.2892	0	1	1500600			17881	1462	12898	12994	17501	17501					-0.07621566888769848
GLVHEFKKGK	10	Unmodified	_GLVHEFKKGK_					0	0	0		VTCN1|p.E85K|1|0.35|ENSG00000134258|chr1:117156766-117156766|C/T|missense_variant	VTCN1|p.E85K|1|0.35|ENSG00000134258|chr1:117156766-117156766|C/T|missense_variant	VTCN1|p.E85K|1|0.35|ENSG00000134258|chr1:117156766-117156766|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	381.96026611328125	3	381.560869	1141.66078	-0.31895	-0.0001217	-0.36149	-0.00013793	-0.68044	-0.00025963	381.56061537744773	18.855	0.25997	19.458	19.423	19.683	0.60308					11	6	3	0	0	0	0.93194	1	5676	5676		5.4027	2.9042	1	40036000			17882	30152	12899	12995	17502	17502					0.09561400013944876
GLVHGLPYV	9	Unmodified	_GLVHGLPYV_					0	0	0		ENSG00000148154|ENST00000374279|UGCG	ENSG00000148154|ENST00000374279|UGCG	ENSG00000148154|ENST00000374279|UGCG	MULTI-SECPEP	A375_MHC_IP_R2	2	478.1740417480469	2	477.774003	953.533452	-0.62305	-0.00029768	0.27447	0.00013114	-0.34858	-0.00016654	477.77407361723783	81.561	0.50446	82.304	82.029	82.533	0.74293					11	9	2	0	0	0	0.53495	1	31003	31003		20.871	0	1	1816100			17883	5717	12900	12996	17503	17503					0.054826791397545094
GLVKKRLISKY	11	Unmodified	_GLVKKRLISKY_					0	0	0			REV__nc|ENSG00000172869|Q9Y485|DMXL1	REV__nc|ENSG00000172869|Q9Y485|DMXL1	MSMS	A375_MHC_IP_R1	1	652.8692626953125	2	652.924272	1303.83399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.64	1	99.64	99.14	100.14	0								0	0	0	0.1629	1	36605	36605		3.5965	2.1146	1		+		17884	21176	12901	12997	17504	17504					0.19422766070374564
GLVNDLARV	9	Unmodified	_GLVNDLARV_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.S3306Afs*6|1|0.29|ENSG00000086758|chrX:53549078-53549079|-/ACGC|frameshift_variant	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	A375_MHC_IP_R2	2	479.1793212890625	2	478.779816	955.545079	-0.50015	-0.00023946	-0.17685	-8.4673E-05	-0.677	-0.00032413	478.7796213496984	73.359	0.3567	74.094	73.836	74.192	0.73541					11	6	2	0	0	0	0.35487	1	27850	27850		36.127	8.4982	1	853970			17885	1846	12902	12998	17505	17505					0.06552876163073051
GLVNYQISV	9	Unmodified	_GLVNYQISV_					0	0	0		nc|ENSG00000169919|P08236-2|GUSB;ENSG00000169919|ENST00000304895|GUSB;ENST00000475316.5_1_7:65439511-65446985:-|nuORF	nc|ENSG00000169919|P08236-2|GUSB	nc|ENSG00000169919|P08236-2|GUSB	MULTI-SECPEP	A375_MHC_IP_R1	1	497.1742858886719	2	496.7742	991.533846	-0.34422	-0.000171	0.42623	0.00021174	0.082004	4.0737E-05	496.7742853176585	98.316	0.55714	98.316	98.05	98.607	0					23	10	3	0	0	0	0.040439	1	36122	36122		61.357	32.276	1	2622900			17886	7452	12903	12999	17506	17506					0.03774054068958321
GLVNYQISV	9	Unmodified	_GLVNYQISV_					0	0	0		nc|ENSG00000169919|P08236-2|GUSB;ENSG00000169919|ENST00000304895|GUSB;ENST00000475316.5_1_7:65439511-65446985:-|nuORF	nc|ENSG00000169919|P08236-2|GUSB	nc|ENSG00000169919|P08236-2|GUSB	MULTI-SECPEP	A375_MHC_IP_R2	2	497.4384765625	2	496.7742	991.533846	-0.61208	-0.00030407	0.21797	0.00010828	-0.3941	-0.00019578	496.77421787594	97.586	0.55939	98.342	98.025	98.585	0.75586					24	10	3	0	0	0	0.012104	1	36997	36997		92.491	32.418	1	2186800			17887	7452	12903	12999	17507	17507					0.03774054068958321
GLVPIWVV	8	Unmodified	_GLVPIWVV_					0	0	0		SLC8B1|p.V390I|1|0.23|ENSG00000089060|chr12:113310323-113310323|C/T|missense_variant	SLC8B1|p.V390I|1|0.23|ENSG00000089060|chr12:113310323-113310323|C/T|missense_variant	SLC8B1|p.V390I|1|0.23|ENSG00000089060|chr12:113310323-113310323|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	442.17608642578125	2	441.776014	881.537475	-0.44851	-0.00019814	1.2056	0.00053259	0.75706	0.00033445	441.7763849140338	141.96	0.20403	141.96	141.88	142.08	0					5	3	2	0	0	0	0.972	1	54503	54503		2.8892	0	1	2018600			17888	29196	12904	13000	17508	17508					0.09196768633466945
GLVQSRSSSL	10	Unmodified	_GLVQSRSSSL_					0	0	0		ENST00000580048.1_1_18:72264886-72265036:-|nuORF	ENST00000580048.1_1_18:72264886-72265036:-|nuORF	ENST00000580048.1_1_18:72264886-72265036:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	517.6852416992188	2	517.285463	1032.55637	-0.39996	-0.0002069	-1.4589	-0.00075466	-1.8589	-0.00096156	517.2854029267236	79.049	0.6636	79.049	78.859	79.522	0					26	12	3	0	0	0	0.6806	1	28871	28871		14.838	0	1	2739200			17889	13669	12905	13001	17509	17509					0.041396534665636864
GLVRSVLL	8	Unmodified	_GLVRSVLL_					0	0	0			REV__LTR2752_dup21|chr2:81481148-81482372:-|1.6527395747859144|0.0780133736102343|4.4|397.0|8|1|sense	REV__LTR2752_dup21|chr2:81481148-81482372:-|1.6527395747859144|0.0780133736102343|4.4|397.0|8|1|sense	MULTI-SECPEP	A375_MHC_IP_R1	1	429.1844177246094	2	428.78437	855.554188	-0.30855	-0.0001323	0.47959	0.00020564	0.17104	7.3341E-05	428.78453089579114	90.261	0.96541	90.261	89.931	90.896	0					51	18	4	0	0	0	0.59711	1	33134	33134		44.407	0	1	24754000	+		17890	26967	12906	13002	17510	17510					0.12063269519433106
GLVRSVLL	8	Unmodified	_GLVRSVLL_					0	0	0			REV__LTR2752_dup21|chr2:81481148-81482372:-|1.6527395747859144|0.0780133736102343|4.4|397.0|8|1|sense	REV__LTR2752_dup21|chr2:81481148-81482372:-|1.6527395747859144|0.0780133736102343|4.4|397.0|8|1|sense	MULTI-SECPEP	A375_MHC_IP_R2	2	429.18414306640625	2	428.78437	855.554188	-0.12366	-5.3025E-05	-0.0685	-2.9372E-05	-0.19216	-8.2397E-05	428.7843102315284	89.142	1.3195	89.874	89.482	90.801	0.7318					60	25	4	0	0	0	0.84748	1	33876	33876		28.487	0	1	22918000	+		17891	26967	12906	13002	17511	17511					0.12063269519433106
GLVSLLRF	8	Unmodified	_GLVSLLRF_					0	0	0			REV__ENST00000352536.7_1_6:117593658-117593937:+|nuORF	REV__ENST00000352536.7_1_6:117593658-117593937:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	453.1842041015625	2	452.78437	903.554188	-0.21138	-9.5712E-05	-0.79091	-0.00035811	-1.0023	-0.00045383	452.7842387096479	60.54	0.50911	60.54	60.312	60.821	0					21	9	3	0	0	0	0.59711	1	21826	21826		28.487	0	1	2144700	+		17892	23801	12907	13003	17512	17512					0.09855269519425747
GLVTDSSAELQ	11	Unmodified	_GLVTDSSAELQ_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-SECPEP	A375_MHC_IP_R2	2	560.146240234375	2	560.280043	1118.54553	-0.55583	-0.00031142	3.1072	0.0017409	2.5514	0.0014295	560.2817698910526	91.225	0.45517	91.96	91.717	92.172	0.73451					10	8	2	0	0	0	0.82225	1	34721	34721		22.736	7.898	1	1582100			17893	2362	12908	13004	17513	17513					-0.0089979369838602
GLVVVNHYL	9	Unmodified	_GLVVVNHYL_					0	0	0		ENST00000433258.5_1_2:71215729-71221885:-|nuORF;ENST00000489894.5_1_2:71216836-71221917:-|nuORF;ENSG00000144043|ENST00000272438|TEX261	ENST00000433258.5_1_2:71215729-71221885:-|nuORF	ENST00000433258.5_1_2:71215729-71221885:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.69232177734375	2	507.292559	1012.57057	-0.4672	-0.00023701	-0.18178	-9.2217E-05	-0.64898	-0.00032922	507.2923749066997	76.582	0.4059	76.582	76.37	76.776	0					11	7	2	0	0	0	0.12259	1	27918	27918		53.576	38.737	1	2257600			17894	5458	12909	13005	17514	17514					0.06478350685517853
GLVVVNHYL	9	Unmodified	_GLVVVNHYL_					0	0	0		ENST00000433258.5_1_2:71215729-71221885:-|nuORF;ENST00000489894.5_1_2:71216836-71221917:-|nuORF;ENSG00000144043|ENST00000272438|TEX261	ENST00000433258.5_1_2:71215729-71221885:-|nuORF	ENST00000433258.5_1_2:71215729-71221885:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9525451660156	2	507.292559	1012.57057	-0.74573	-0.00037831	0.1933	9.8058E-05	-0.55244	-0.00028025	507.2923124628595	75.635	0.5626	76.376	76.078	76.64	0.74052					20	10	3	0	0	0	0.04649	1	28704	28704		74.396	53.943	1	2905000			17895	5458	12909	13005	17515	17515					0.06478350685517853
GLVVYSVVWMS	11	Unmodified	_GLVVYSVVWMS_					0	0	0			REV__nc|ENSG00000174233|O43306-2|ADCY6	REV__nc|ENSG00000174233|O43306-2|ADCY6	MSMS	A375_MHC_IP_R1	1	413.9398193359375	3	413.886253	1238.63693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.363	1	32.363	31.863	32.863	0								0	0	0	0.16099	1	10450	10450		13.519	2.6197	1		+		17896	21275	12910	13006	17516	17516					0.027157984652603773
GLVWLLMV	8	Unmodified	_GLVWLLMV_					0	0	0		ENSG00000120436|ENST00000366834|GPR31	ENSG00000120436|ENST00000366834|GPR31	ENSG00000120436|ENST00000366834|GPR31	MULTI-SECPEP	A375_MHC_IP_R1	1	465.6502380371094	2	465.777699	929.540846	-0.1646	-7.6669E-05	-0.16541	-7.7044E-05	-0.33001	-0.00015371	465.77751268076526	104.85	1.8271	104.85	103.98	105.81	0					59	35	2	0	0	0	0.95327	1	38232	38232		2.8892	0	1	2892700			17897	3662	12911	13007	17517	17517					0.07325695415829614
GLVYGHSKYL	10	Unmodified	_GLVYGHSKYL_					0	0	0			REV__ENST00000315249.11_1_17:33338734-33338833:-|nuORF	REV__ENST00000315249.11_1_17:33338734-33338833:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	568.2012939453125	2	568.808574	1135.60259	-0.52987	-0.0003014	-0.19204	-0.00010924	-0.72192	-0.00041063	569.3109454086817	84.692	0.20326	84.692	84.545	84.749	0					5	3	2	0	0	0	0.90853	1	30991	30991		3.5965	2.267	1	1582000	+		17898	23529	12912	13008	17518	17518					0.04021718368676375
GLWARWISM	9	Unmodified	_GLWARWISM_					0	0	0			REV__ENST00000481804.5_1_16:775346-776019:-|nuORF	REV__ENST00000481804.5_1_16:775346-776019:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	560.2083129882812	2	560.292037	1118.56952	-0.44933	-0.00025176	-0.051271	-2.8727E-05	-0.5006	-0.00028048	560.7933838740289	81.646	0.55634	81.646	81.303	81.86	0					21	10	3	0	0	0	0.65246	1	29766	29766		10.824	2.0785	1	1285500	+		17899	25267	12913	13009	17519	17519					0.014978130449435412
GLWDKFSEL	9	Unmodified	_GLWDKFSEL_					0	0	0		ENST00000550265.5_1_12:53607169-53614138:-|nuORF;ENST00000548317.1_1_12:53607836-53609095:-|nuORF;ENST00000480001.5_1_3:25470222-25636040:+|nuORF;nc|ENSG00000077092|P10826-3|RARB;nc|ENSG00000172819|P13631-3|RARG;nc|ENSG00000172819|P13631-4|RARG;nc|ENSG00000172819|P13631-2|RARG;ENSG00000077092|ENST00000330688|RARB;ENSG00000172819|ENST00000425354|RARG;nc|ENSG00000077092|P10826|RARB	ENST00000550265.5_1_12:53607169-53614138:-|nuORF	ENST00000550265.5_1_12:53607169-53614138:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	548.1787719726562	2	547.779482	1093.54441	-0.02672	-1.4637E-05	-0.37529	-0.00020557	-0.40201	-0.00022021	547.7792864873535	114.18	0.7653	114.18	113.85	114.62	0					25	14	3	0	0	0	0.010931	1	41833	41833		136.39	36.021	1	10873000			17900	13366	12914	13010	17520	17520					0.0013803672338781325
GLWDKFSEL	9	Unmodified	_GLWDKFSEL_					0	0	0		ENST00000550265.5_1_12:53607169-53614138:-|nuORF;ENST00000548317.1_1_12:53607836-53609095:-|nuORF;ENST00000480001.5_1_3:25470222-25636040:+|nuORF;nc|ENSG00000077092|P10826-3|RARB;nc|ENSG00000172819|P13631-3|RARG;nc|ENSG00000172819|P13631-4|RARG;nc|ENSG00000172819|P13631-2|RARG;ENSG00000077092|ENST00000330688|RARB;ENSG00000172819|ENST00000425354|RARG;nc|ENSG00000077092|P10826|RARB	ENST00000550265.5_1_12:53607169-53614138:-|nuORF	ENST00000550265.5_1_12:53607169-53614138:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	548.17822265625	2	547.779482	1093.54441	-0.56496	-0.00030947	0.20871	0.00011433	-0.35624	-0.00019514	547.7795734546335	113.36	0.66331	114.07	113.72	114.38	0.70984					28	12	3	0	0	0	0.0042663	1	42699	42699		160.69	40.239	1	8703900			17901	13366	12914	13010	17521	17521					0.0013803672338781325
GLWDVPAWES	10	Unmodified	_GLWDVPAWES_					0	0	0		nc|ENSG00000197362|Q8N393-2|ZNF786;ENSG00000197362|ENST00000491431|ZNF786	nc|ENSG00000197362|Q8N393-2|ZNF786	nc|ENSG00000197362|Q8N393-2|ZNF786	MULTI-MSMS	A375_MHC_IP_R1	1	580.234619140625	2	580.274564	1158.53457	-0.10753	-6.2397E-05	-0.20912	-0.00012135	-0.31665	-0.00018374	580.2743206080298	72.737	0.50654	72.737	72.474	72.98	0					12	9	2	0	0	0	0.69306	1	26513	26513		13.906	3.8321	1	1885100			17902	9149	12915	13011	17522	17522					-0.03835151282009974
GLWDVPAWES	10	Unmodified	_GLWDVPAWES_					0	0	0		nc|ENSG00000197362|Q8N393-2|ZNF786;ENSG00000197362|ENST00000491431|ZNF786	nc|ENSG00000197362|Q8N393-2|ZNF786	nc|ENSG00000197362|Q8N393-2|ZNF786	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	580.274564	1158.53457	-0.10753	-6.2397E-05	-0.20912	-0.00012135	-0.31665	-0.00018374	580.2743206080298	72.737	0.50654	72.737	72.474	72.98	0	-0.05892	4.4566E-05	NaN	13.906	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1885100			17903	9149	12915	13011							-0.03835151282009974
GLWDVPAWES	10	Unmodified	_GLWDVPAWES_					0	0	0		nc|ENSG00000197362|Q8N393-2|ZNF786;ENSG00000197362|ENST00000491431|ZNF786	nc|ENSG00000197362|Q8N393-2|ZNF786	nc|ENSG00000197362|Q8N393-2|ZNF786	MULTI-MATCH	A375_MHC_IP_R2	2		2	580.274564	1158.53457	-0.52887	-0.00030689	-0.29372	-0.00017044	-0.82259	-0.00047733	580.2742792891204	72.12	0.35419	72.855	72.567	72.921	0.73421	0.05892	-5.3621E-05	NaN	13.906	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1227200			17904	9149	12915	13011							-0.03835151282009974
GLWEEAYRV	9	Unmodified	_GLWEEAYRV_					0	0	0		ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172	ENSG00000138002|ENST00000260570|IFT172	ENSG00000138002|ENST00000260570|IFT172	MULTI-MSMS	A375_MHC_IP_R1	1	562.1821899414062	2	561.782556	1121.55056	-0.33341	-0.00018731	0.2086	0.00011719	-0.12481	-7.0117E-05	561.7825995808731	82.035	0.86257	82.035	81.657	82.52	0					48	16	4	0	0	0	0.012843	1	29932	29932		92.653	40.385	1	30981000			17905	4942	12916	13012	17523	17523					-0.005354450451250159
GLWEEAYRV	9	Unmodified	_GLWEEAYRV_					0	0	0		ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172	ENSG00000138002|ENST00000260570|IFT172	ENSG00000138002|ENST00000260570|IFT172	MULTI-SECPEP	A375_MHC_IP_R2	2	561.2682495117188	2	561.782556	1121.55056	-0.67778	-0.00038077	0.3078	0.00017292	-0.36998	-0.00020785	561.782643183782	81.358	1.166	82.101	81.518	82.684	0.74301					58	22	4	0	0	0	0.13199	1	30942	30942		75.761	23.492	1	27969000			17906	4942	12916	13012	17524	17524					-0.005354450451250159
GLWFEERRNGF	11	Unmodified	_GLWFEERRNGF_					0	0	0			REV__TNC|p.D2049N|1|0.22|ENSG00000041982|chr9:115029384-115029384|C/T|missense_variant	REV__TNC|p.D2049N|1|0.22|ENSG00000041982|chr9:115029384-115029384|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	706.2457275390625	2	705.849293	1409.68403	-0.74914	-0.00052878	-2.315	-0.001634	-3.0642	-0.0021628	705.8464592885314	67.255	1.1703	67.991	67.29	68.461	0.73631					46	22	4	0	0	0	0.62292	1	25440	25440		21.537	1.1224	1	12538000	+		17907	28136	12917	13013	17525	17525					-0.004422059394073585
GLWGHPVLA	9	Unmodified	_GLWGHPVLA_					0	0	0		nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000494124.2_1_9:19316810-19337609:+|nuORF;ENST00000380437.8_1_9:19332177-19336426:+|nuORF	nc|ENSG00000137145|Q5VZ89-5|DENND4C	nc|ENSG00000137145|Q5VZ89-5|DENND4C	MULTI-MSMS	A375_MHC_IP_R1	1	475.6661071777344	2	475.266345	948.518136	-0.43316	-0.00020587	-0.13871	-6.5923E-05	-0.57187	-0.00027179	475.26613533124004	77.993	0.50911	77.993	77.742	78.251	0					21	9	3	0	0	0	0.042019	1	28470	28470		67.413	26.964	1	3148400			17908	4862	12918	13014	17526	17526					0.041818123425514386
GLWGHPVLA	9	Unmodified	_GLWGHPVLA_					0	0	0		nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000494124.2_1_9:19316810-19337609:+|nuORF;ENST00000380437.8_1_9:19332177-19336426:+|nuORF	nc|ENSG00000137145|Q5VZ89-5|DENND4C	nc|ENSG00000137145|Q5VZ89-5|DENND4C	MULTI-SECPEP	A375_MHC_IP_R2	2	475.645263671875	2	475.266345	948.518136	-0.54005	-0.00025667	-0.31441	-0.00014943	-0.85446	-0.0004061	475.26615584946035	76.976	0.60629	77.719	77.404	78.01	0.74293					17	11	2	0	0	0	0.090069	1	29187	29187		67.413	46.542	1	3639900			17909	4862	12918	13014	17527	17527					0.041818123425514386
GLWGPVHEL	9	Unmodified	_GLWGPVHEL_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	504.892822265625	2	504.269084	1006.52362	-0.57922	-0.00029208	0.078511	3.9591E-05	-0.50071	-0.00025249	504.2690945690341	85.656	1.1153	85.656	85.21	86.325	0					43	21	3	0	0	0	0.089948	1	31406	31406		60.39	13.469	1	14890000			17910	9268	12919	13015	17528	17528					0.020614911343841413
GLWGPVHEL	9	Unmodified	_GLWGPVHEL_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	504.66888427734375	2	504.269084	1006.52362	-0.55925	-0.00028201	0.11027	5.5603E-05	-0.44898	-0.00022641	504.2690937961805	84.711	1.2199	85.447	85.171	86.391	0.73601					50	23	3	0	0	0	0.042197	1	32188	32188		67.344	20.423	1	15951000			17911	9268	12919	13015	17529	17529					0.020614911343841413
GLWGTTLTEN	10	Unmodified	_GLWGTTLTEN_					0	0	0		nc|ENSG00000107593|Q9P0L9-4|PKD2L1;nc|ENSG00000107593|Q9P0L9-3|PKD2L1;nc|ENSG00000107593|Q9P0L9-2|PKD2L1;nc|ENSG00000107593|Q9P0L9-5|PKD2L1;ENSG00000107593|ENST00000318222|PKD2L1	nc|ENSG00000107593|Q9P0L9-4|PKD2L1	nc|ENSG00000107593|Q9P0L9-4|PKD2L1	MULTI-MSMS	A375_MHC_IP_R1	1	545.6644897460938	2	546.272021	1090.52949	-0.18932	-0.00010342	-0.65996	-0.00036052	-0.84928	-0.00046394	546.271730970243	69.126	0.91293	69.126	68.769	69.681	0					27	17	3	0	0	0	0.66308	1	25072	25072		16.149	0.30192	1	3646900			17912	2744	12920	13016	17530	17530					-0.01215455144642874
GLWGTTLTEN	10	Unmodified	_GLWGTTLTEN_					0	0	0		nc|ENSG00000107593|Q9P0L9-4|PKD2L1;nc|ENSG00000107593|Q9P0L9-3|PKD2L1;nc|ENSG00000107593|Q9P0L9-2|PKD2L1;nc|ENSG00000107593|Q9P0L9-5|PKD2L1;ENSG00000107593|ENST00000318222|PKD2L1	nc|ENSG00000107593|Q9P0L9-4|PKD2L1	nc|ENSG00000107593|Q9P0L9-4|PKD2L1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	546.272021	1090.52949	-0.18932	-0.00010342	-0.65996	-0.00036052	-0.84928	-0.00046394	546.271730970243	69.126	0.91293	69.126	68.769	69.681	0	0.05485	-0.00013344	NaN	16.149	27	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3646900			17913	2744	12920	13016							-0.01215455144642874
GLWHDVIFI	9	Unmodified	_GLWHDVIFI_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-MSMS	A375_MHC_IP_R1	1	550.699462890625	2	550.300384	1098.58622	-0.083664	-4.6041E-05	-0.68811	-0.00037867	-0.77177	-0.00042471	550.2999983286417	126.89	1.0633	126.89	126.71	127.77	0					54	20	4	0	0	0	0.0094581	2	48535	48535;48642		106.85	68.694	1	1005099999.9999999			17914	3109	12921	13017	17531;17532	17531					0.040866372025675446
GLWHDVIFI	9	Unmodified	_GLWHDVIFI_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-MSMS	A375_MHC_IP_R2	2	550.7012939453125	2	550.300384	1098.58622	-0.74755	-0.00041138	-0.7707	-0.00042411	-1.5182	-0.00083549	550.2999319113978	126.51	1.1118	126.81	126.43	127.54	0.2951					57	21	5	0	0	0	0.0099532	1	49486	49486		120.86	74.836	1	1609799999.9999998			17915	3109	12921	13017	17533	17533					0.040866372025675446
GLWLKRLW	8	Unmodified	_GLWLKRLW_					0	0	0		nc|ENSG00000211452|P49895-3|DIO1;nc|ENSG00000211452|P49895-6|DIO1;nc|ENSG00000211452|P49895-8|DIO1;nc|ENSG00000211452|P49895-9|DIO1;nc|ENSG00000211452|P49895-7|DIO1;nc|ENSG00000211452|P49895-5|DIO1;nc|ENSG00000211452|P49895-2|DIO1;nc|ENSG00000211452|P49895-4|DIO1;ENSG00000211452|ENST00000361921|DIO1	nc|ENSG00000211452|P49895-3|DIO1	nc|ENSG00000211452|P49895-3|DIO1	MULTI-SECPEP	A375_MHC_IP_R2	2	358.4382629394531	3	357.886917	1070.63892	-0.55008	-0.00019687	0.012925	4.6256E-06	-0.53716	-0.00019224	357.8869952540997	22.017	0.25443	22.636	22.49	22.744	0.61932					7	4	2	0	0	0	0.972	1	7008	7008		3.5965	0.60125	1	470590			17916	14869	12922	13018	17534	17534					0.10642640056016717
GLWLPPAE	8	Unmodified	_GLWLPPAE_					0	0	0		ENST00000252445.7_1_19:11664136-11664256:-|nuORF	ENST00000252445.7_1_19:11664136-11664256:-|nuORF	ENST00000252445.7_1_19:11664136-11664256:-|nuORF	MSMS	A375_MHC_IP_R2	2	441.677734375	2	441.739628	881.464704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.728	1	19.331	18.831	19.831	0.60308								0	0	0	0.16876	1	5585	5585		0.79363	0	1				17917	10208	12923	13019	17535	17535					0.01923014840031101
GLWRKLAGKV	10	Unmodified	_GLWRKLAGKV_					0	0	0			REV__ENSG00000177212|ENST00000641220|OR2T33	REV__ENSG00000177212|ENST00000641220|OR2T33	MULTI-MSMS	A375_MHC_IP_R2	2	376.9645690917969	3	376.573109	1126.6975	-0.057751	-2.1747E-05	1.1847	0.00044611	1.1269	0.00042436	376.57366956661076	28.233	0.15188	28.912	28.808	28.96	0.67857					4	2	2	0	0	0	0.70329	1	9711	9711		6.1918	0.46	1	458450	+		17918	21446	12924	13020	17536	17536					0.1392169663047298
GLWRRLRPRQ	10	Unmodified	_GLWRRLRPRQ_					0	0	0		ENST00000315930.10_3_X:137793281-137793449:-|nuORF	ENST00000315930.10_3_X:137793281-137793449:-|nuORF	ENST00000315930.10_3_X:137793281-137793449:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	669.80322265625	2	669.404904	1336.79525	-0.95318	-0.00063806	-0.80139	-0.00053645	-1.7546	-0.0011745	669.4045825103631	142.21	0.96074	142.21	141.52	142.49	0					26	18	2	0	0	0	0.72416	1	54541	54541		1.4819	0.15237	1	1822400			17919	10659	12925	13021	17537	17537					0.1403289827919707
GLWVKRRRRK	10	Unmodified	_GLWVKRRRRK_					0	0	0			REV__ENST00000507416.1_1_5:60457038-60458278:-|nuORF	REV__ENST00000507416.1_1_5:60457038-60458278:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	677.286376953125	2	677.936371	1353.85819	-0.49814	-0.00033771	1.8707	0.0012682	1.3726	0.00093054	677.9371469780002	110.56	0.15249	111.3	111.19	111.34	0.73692					4	2	2	0	0	0	0.94819	1	41701	41701		0	0	1	718960	+		17920	25565	12926	13022	17538	17538					0.19541464067242487
GLYEFPLNKV	10	Unmodified	_GLYEFPLNKV_					0	0	0		nc|ENSG00000089195|Q9UJA5-3|TRMT6;nc|ENSG00000089195|Q9UJA5-2|TRMT6;ENSG00000089195|ENST00000203001|TRMT6;nc|ENSG00000089195|Q9UJA5-4|TRMT6	nc|ENSG00000089195|Q9UJA5-3|TRMT6	nc|ENSG00000089195|Q9UJA5-3|TRMT6	MULTI-SECPEP	A375_MHC_IP_R1	1	590.7234497070312	2	590.324057	1178.63356	-0.13087	-7.7253E-05	-0.35004	-0.00020664	-0.48091	-0.00028389	590.3236998360875	93.045	0.56058	93.045	92.718	93.279	0					26	10	5	0	0	0	0.5901	1	34189	34189		60.074	60.074	1	7046200			17921	1920	12927	13023	17539	17539					0.05138871682879653
GLYEFPLNKV	10	Unmodified	_GLYEFPLNKV_					0	0	0		nc|ENSG00000089195|Q9UJA5-3|TRMT6;nc|ENSG00000089195|Q9UJA5-2|TRMT6;ENSG00000089195|ENST00000203001|TRMT6;nc|ENSG00000089195|Q9UJA5-4|TRMT6	nc|ENSG00000089195|Q9UJA5-3|TRMT6	nc|ENSG00000089195|Q9UJA5-3|TRMT6	MULTI-SECPEP	A375_MHC_IP_R2	2	590.7235717773438	2	590.324057	1178.63356	-0.48544	-0.00028657	-0.31745	-0.0001874	-0.80289	-0.00047397	590.3237805238596	92.345	0.65698	93.084	92.684	93.341	0.73901					23	12	3	0	0	0	0.47871	1	35098	35098		69.105	40.023	1	3826800			17922	1920	12927	13023	17540	17540					0.05138871682879653
GLYEGLTWL	9	Unmodified	_GLYEGLTWL_					0	0	0		ENSG00000165527|ENST00000298316|ARF6	ENSG00000165527|ENST00000298316|ARF6	ENSG00000165527|ENST00000298316|ARF6	MULTI-MSMS	A375_MHC_IP_R1	1	526.6766967773438	2	526.276575	1050.5386	-0.71099	-0.00037418	0.36316	0.00019112	-0.34783	-0.00018306	526.2768007108889	131.15	0.40482	131.15	130.97	131.38	0					14	7	3	0	0	0	0.026461	1	50581	50581		77.984	20.513	1	10980000			17923	6966	12928	13024	17541	17541					0.015349382117165078
GLYEGLTWL	9	Unmodified	_GLYEGLTWL_					0	0	0		ENSG00000165527|ENST00000298316|ARF6	ENSG00000165527|ENST00000298316|ARF6	ENSG00000165527|ENST00000298316|ARF6	MULTI-MSMS	A375_MHC_IP_R2	2	526.6761474609375	2	526.276575	1050.5386	-0.45634	-0.00024016	0.16965	8.9284E-05	-0.28669	-0.00015088	526.27665528926	130.92	0.55846	131.14	130.91	131.46	0.2142					17	10	3	0	0	0	0.026461	1	51524	51524		77.984	17.595	1	12266000			17924	6966	12928	13024	17542	17542					0.015349382117165078
GLYGAIFRL	9	Unmodified	_GLYGAIFRL_					0	0	0		ENSG00000125910|ENST00000246115|S1PR4	ENSG00000125910|ENST00000246115|S1PR4	ENSG00000125910|ENST00000246115|S1PR4	MULTI-SECPEP	A375_MHC_IP_R2	2	504.63214111328125	2	505.295102	1008.57565	-0.53605	-0.00027086	-0.39919	-0.00020171	-0.93524	-0.00047257	505.79667658187884	110.89	0.35418	111.62	111.34	111.7	0.73692					10	6	2	0	0	0	0.58271	1	41826	41826		14.838	6.245	1	940840			17925	4007	12929	13025	17543	17543					0.07170654548144739
GLYGKQVA	8	Unmodified	_GLYGKQVA_					0	0	0		nc|ENSG00000163703|Q96HD1-2|CRELD1	nc|ENSG00000163703|Q96HD1-2|CRELD1	nc|ENSG00000163703|Q96HD1-2|CRELD1	MULTI-SECPEP	A375_MHC_IP_R1	1	418.6372985839844	2	418.237253	834.459953	-0.20771	-8.6872E-05	0.062214	2.602E-05	-0.1455	-6.0851E-05	418.2371721512679	41.394	0.7143	41.394	41.114	41.828	0					31	13	3	0	0	0	0.85124	1	14261	14261		34.187	0	1	32613000			17926	14721	12930	13026	17544	17544					0.03610130697279601
GLYGKQVA	8	Unmodified	_GLYGKQVA_					0	0	0		nc|ENSG00000163703|Q96HD1-2|CRELD1	nc|ENSG00000163703|Q96HD1-2|CRELD1	nc|ENSG00000163703|Q96HD1-2|CRELD1	MULTI-SECPEP	A375_MHC_IP_R2	2	418.6370544433594	2	418.237253	834.459953	-0.18506	-7.74E-05	0.39216	0.00016402	0.2071	8.6616E-05	418.2373060571856	40.589	0.60999	41.363	41.082	41.692	0.77451					30	11	4	0	0	0	0.85124	1	15000	15000		34.187	7.8461	1	27967000			17927	14721	12930	13026	17545	17545					0.03610130697279601
GLYGLIVAL	9	Unmodified	_GLYGLIVAL_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-SECPEP	A375_MHC_IP_R2	2	917.9889526367188	1	918.565881	917.558604	-0.27445	-0.0002521	0.024293	2.2315E-05	-0.25015	-0.00022978	918.5657564501951	132.85	0.40514	133.02	132.84	133.25	0.16487					13	7	3	0	0	0	0.090069	1	52254	52254		67.413	3.8502	1	19155000			17928	8701	12931	13027	17546	17546					0.09652733942323266
GLYGLIVAL	9	Unmodified	_GLYGLIVAL_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MATCH	A375_MHC_IP_R1	1		1	918.565881	917.558604	-0.34927	-0.00032083	0.14747	0.00013546	-0.2018	-0.00018536	918.5660259047438	133.02	0.40955	133.02	132.89	133.3	0	0.0021207	5.9247E-05	NaN	67.413	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24269000			17929	8701	12931	13027							0.09652733942323266
GLYKFHLE	8	Unmodified	_GLYKFHLE_					0	0	0			REV__nc|ENSG00000132792|Q8WYA6-3|CTNNBL1	REV__nc|ENSG00000132792|Q8WYA6-3|CTNNBL1	MULTI-SECPEP	A375_MHC_IP_R1	1	504.18292236328125	2	503.77146	1005.52837	-0.44242	-0.00022288	1.0698	0.00053894	0.62738	0.00031606	503.7720278144064	19.782	0.30603	19.782	19.571	19.877	0					8	5	2	0	0	0	0.972	1	4931	4931		5.7604	0	1	952130	+		17930	18681	12932	13028	17547	17547					0.02582375277143001
GLYLGNFI	8	Unmodified	_GLYLGNFI_					0	0	0		ENST00000493115.1_1_20:30452068-30458299:-|nuORF;nc|ENSG00000149599|Q9H1R2-2|DUSP15;ENSG00000149599|ENST00000339738|DUSP15;nc|ENSG00000149599|Q9H1R2|DUSP15	ENST00000493115.1_1_20:30452068-30458299:-|nuORF	ENST00000493115.1_1_20:30452068-30458299:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	449.1363525390625	2	448.747453	895.480354	-0.38251	-0.00017165	-1.3387	-0.00060073	-1.7212	-0.00077239	448.7466010250917	40.365	1.371	41.14	40.067	41.438	0.77451					37	26	2	0	0	0	0.93416	1	14867	14867		9.3474	0	1	1076400			17931	5819	12933	13029	17548	17548					0.028433013570861476
GLYPKVAKI	9	Unmodified	_GLYPKVAKI_					0	0	0		nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36;ENST00000460695.1_1_3:153998366-154000997:-|nuORF	nc|ENSG00000174953|Q9H2U1-3|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	MULTI-SECPEP	A375_MHC_IP_R1	1	495.2130432128906	2	494.813128	987.611703	0.028821	1.4261E-05	-0.38648	-0.00019124	-0.35766	-0.00017698	494.81282384598353	44.509	0.61102	44.509	44.267	44.878	0					27	11	3	0	0	0	0.24548	1	15520	15520		52.268	12.311	1	3822000			17932	7918	12934	13030	17549	17549					0.11740111724986946
GLYPKVAKI	9	Unmodified	_GLYPKVAKI_					0	0	0		nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36;ENST00000460695.1_1_3:153998366-154000997:-|nuORF	nc|ENSG00000174953|Q9H2U1-3|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	MULTI-SECPEP	A375_MHC_IP_R2	2	495.21240234375	2	494.813128	987.611703	-0.30055	-0.00014871	-0.50862	-0.00025167	-0.80917	-0.00040039	494.8128395817064	43.61	0.70737	44.381	44.026	44.734	0.77075					23	13	2	0	0	0	0.49205	1	16238	16238		34.402	10.381	1	3517300			17933	7918	12934	13030	17550	17550					0.11740111724986946
GLYPNLIQV	9	Unmodified	_GLYPNLIQV_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30;DHX30|p.S1163Qfs*25|1|0.5|ENSG00000132153|chr3:47850015-47850016|-/C|frameshift_variant	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	A375_MHC_IP_R2	2	509.19171142578125	2	508.792392	1015.57023	-0.72686	-0.00036982	-0.32764	-0.0001667	-1.0545	-0.00053653	508.7922464093762	120.71	0.55257	121.16	120.87	121.42	0.44488					16	10	2	0	0	0	0.0070665	1	46117	46117		131.3	53.313	1	18467000			17934	4375	12935	13031	17551	17551					0.06306930965672564
GLYPQSPLL	9	Unmodified	_GLYPQSPLL_					0	0	0		HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant;ENSG00000128731|ENST00000261609|HERC2;ENST00000430598.5_1_15:20613931-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;ENST00000524476.5_1_15:28882105-28886289:+|nuORF;ENST00000529353.1_1_15:28878360-28886587:+|nuORF;ENST00000529624.5_3_15:28877823-28916776:+|nuORF	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant;ENST00000529624.5_3_15:28877823-28916776:+|nuORF	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	494.6788635253906	2	494.279118	986.543683	-0.48494	-0.0002397	-0.2238	-0.00011062	-0.70874	-0.00035031	494.2791238814666	108.12	0.51198	108.88	108.66	109.17	0.75436					19	9	3	0	0	0	0.47368	1	40834	40834		26.884	5.137	1	1689300			17935	14109;13133	12936	13032	17552	17552					0.049872420743326984
GLYQDPVTL	9	Unmodified	_GLYQDPVTL_					0	0	0		ENSG00000141569|ENST00000269383|TRIM65	ENSG00000141569|ENST00000269383|TRIM65	ENSG00000141569|ENST00000269383|TRIM65	MULTI-MSMS	A375_MHC_IP_R1	1	503.6660461425781	2	503.266207	1004.51786	-0.53811	-0.00027081	0.089229	4.4906E-05	-0.44888	-0.0002259	503.26619636412204	94.725	0.81704	94.725	94.343	95.16	0					43	15	4	0	0	0	0.015701	1	34750	34750		88.954	41.205	1	12285000			17936	5258	12937	13033	17553	17553					0.01578347832048621
GLYQDPVTL	9	Unmodified	_GLYQDPVTL_					0	0	0		ENSG00000141569|ENST00000269383|TRIM65	ENSG00000141569|ENST00000269383|TRIM65	ENSG00000141569|ENST00000269383|TRIM65	MULTI-MSMS	A375_MHC_IP_R2	2	503.6656799316406	2	503.266207	1004.51786	-0.47959	-0.00024136	-0.28025	-0.00014104	-0.75983	-0.0003824	503.2660686352442	93.927	0.75986	94.672	94.362	95.122	0.74474					39	14	4	0	0	0	0.0090323	1	35659	35659		99.799	43.622	1	12998000			17937	5258	12937	13033	17554	17554					0.01578347832048621
GLYQGQVLV	9	Unmodified	_GLYQGQVLV_					0	0	0		nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4;ENST00000464168.5_1_3:49362133-49365232:-|nuORF;nc|ENSG00000135655|Q9Y4E8-4|USP15;nc|ENSG00000114316|Q13107-3|USP4;nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;ENSG00000135655|ENST00000280377|USP15	nc|ENSG00000114316|Q13107-2|USP4;nc|ENSG00000114316|Q13107-3|USP4;nc|ENSG00000135655|Q9Y4E8-2|USP15	nc|ENSG00000114316|Q13107-2|USP4	MULTI-MSMS	A375_MHC_IP_R1	1	489.1766662597656	2	488.776742	975.538931	-0.15291	-7.4739E-05	-0.15083	-7.3724E-05	-0.30374	-0.00014846	488.77649017402126	88.692	0.66056	88.692	88.46	89.12	0					26	12	3	0	0	0	0.021919	1	32576	32576		81.864	18.301	1	2675900			17938	3210;14555;4702	12938	13034	17555	17555					0.05018357931578521
GLYQGQVLV	9	Unmodified	_GLYQGQVLV_					0	0	0		nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4;ENST00000464168.5_1_3:49362133-49365232:-|nuORF;nc|ENSG00000135655|Q9Y4E8-4|USP15;nc|ENSG00000114316|Q13107-3|USP4;nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;ENSG00000135655|ENST00000280377|USP15	nc|ENSG00000114316|Q13107-2|USP4;nc|ENSG00000114316|Q13107-3|USP4;nc|ENSG00000135655|Q9Y4E8-2|USP15	nc|ENSG00000114316|Q13107-2|USP4	MULTI-SECPEP	A375_MHC_IP_R1	1	976.3570556640625	1	976.546208	975.538931	0.27174	0.00026536	-0.15092	-0.00014738	0.12082	0.00011798	976.5459255898918	88.723	0.40828	88.723	88.51	88.919	0					11	7	2	0	0	0	0.24548	1	32613	32613		52.268	8.4101	1	2213900			17939	3210;14555;4702	12938	13034	17556	17556					0.05018357931578521
GLYQGQVLV	9	Unmodified	_GLYQGQVLV_					0	0	0		nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4;ENST00000464168.5_1_3:49362133-49365232:-|nuORF;nc|ENSG00000135655|Q9Y4E8-4|USP15;nc|ENSG00000114316|Q13107-3|USP4;nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;ENSG00000135655|ENST00000280377|USP15	nc|ENSG00000114316|Q13107-2|USP4;nc|ENSG00000114316|Q13107-3|USP4;nc|ENSG00000135655|Q9Y4E8-2|USP15	nc|ENSG00000114316|Q13107-2|USP4	MULTI-SECPEP	A375_MHC_IP_R2	2	489.17633056640625	2	488.776742	975.538931	-0.49431	-0.00024161	0.15331	7.4936E-05	-0.341	-0.00016667	488.7766799104356	87.959	0.70987	88.69	88.316	89.026	0.7318					26	13	3	0	0	0	0.054184	1	33438	33438		81.864	28.288	1	3937200			17940	3210;14555;4702	12938	13034	17557	17557					0.05018357931578521
GLYQLDLFS	9	Unmodified	_GLYQLDLFS_					0	0	0		NDNF|p.L151F|1|0.26|ENSG00000173376|chr4:121037520-121037520|G/A|missense_variant	NDNF|p.L151F|1|0.26|ENSG00000173376|chr4:121037520-121037520|G/A|missense_variant	NDNF|p.L151F|1|0.26|ENSG00000173376|chr4:121037520-121037520|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	528.6735229492188	2	528.274032	1054.53351	-0.51862	-0.00027397	0.2845	0.00015029	-0.23412	-0.00012368	528.2740143387374	130.95	0.20396	131.16	131.06	131.26	0.2142					8	3	3	0	0	0	0.29981	1	51530	51530		30.637	5.2372	1	3014500			17941	14986	12939	13035	17558	17558					0.008426343491009902
GLYSKPFL	8	Unmodified	_GLYSKPFL_					0	0	0		FCAR|p.G124S|1|0.39|ENSG00000186431|chr19:54888015-54888015|G/A|missense_variant	FCAR|p.G124S|1|0.39|ENSG00000186431|chr19:54888015-54888015|G/A|missense_variant	FCAR|p.G124S|1|0.39|ENSG00000186431|chr19:54888015-54888015|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	463.1633605957031	2	462.763104	923.511654	-0.35576	-0.00016463	0.6884	0.00031857	0.33264	0.00015393	462.7630971496906	95.113	0.45866	95.113	94.853	95.312	0					17	8	3	0	0	0	0.84748	1	34968	34968		21.747	7.165	1	1485800			17942	13987	12940	13036	17559	17559					0.046838743911848724
GLYSQVSKLLA	11	Unmodified	_GLYSQVSKLLA_					0	0	0		ENSG00000185070|ENST00000330753|FLRT2	ENSG00000185070|ENST00000330753|FLRT2	ENSG00000185070|ENST00000330753|FLRT2	MULTI-SECPEP	A375_MHC_IP_R1	1	590.242431640625	2	589.842613	1177.67067	-0.28367	-0.00016732	-0.044603	-2.6309E-05	-0.32828	-0.00019363	589.8427172008911	98.532	0.76342	98.532	98.101	98.864	0					24	14	3	0	0	0	0.52639	1	36190	36190		51.765	35.616	1	3656500			17943	8638	12941	13037	17560	17560					0.08894543228689145
GLYSQVSKLLA	11	Unmodified	_GLYSQVSKLLA_					0	0	0		ENSG00000185070|ENST00000330753|FLRT2	ENSG00000185070|ENST00000330753|FLRT2	ENSG00000185070|ENST00000330753|FLRT2	MULTI-MATCH	A375_MHC_IP_R2	2		2	589.842613	1177.67067	-0.70267	-0.00041446	0.19207	0.00011329	-0.51059	-0.00030117	589.8428228216221	97.5	0.50835	98.255	98.025	98.534	0.75586	-0.13833	0.00010735	NaN	74.772	24	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3431900			17944	8638	12941	13037							0.08894543228689145
GLYSRQLYV	9	Unmodified	_GLYSRQLYV_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-SECPEP	A375_MHC_IP_R1	1	550.2002563476562	2	549.800749	1097.58694	-0.44335	-0.00024375	-0.82564	-0.00045394	-1.269	-0.00069769	549.8000766200187	62.857	0.66631	62.857	62.557	63.223	0					20	12	2	0	0	0	0.30925	1	22707	22707		49.554	20.473	1	3045500			17945	4297	12942	13038	17561	17561					0.04205431851596586
GLYSRQLYV	9	Unmodified	_GLYSRQLYV_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-SECPEP	A375_MHC_IP_R2	2	550.2001342773438	2	549.800749	1097.58694	-1.0251	-0.00056362	0.051023	2.8052E-05	-0.97412	-0.00053557	549.800656102285	62.037	0.55661	62.78	62.471	63.028	0.74263					15	10	2	0	0	0	0.30925	1	23491	23491		49.554	16.769	1	2344500			17946	4297	12942	13038	17562	17562					0.04205431851596586
GLYTGEVRTA	10	Unmodified	_GLYTGEVRTA_					0	0	0		PCDHGA7|p.V619I|1|0.69|ENSG00000253537|chr5:141384754-141384754|G/A|missense_variant;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;ENSG00000253537|ENST00000518325|PCDHGA7	PCDHGA7|p.V619I|1|0.69|ENSG00000253537|chr5:141384754-141384754|G/A|missense_variant	PCDHGA7|p.V619I|1|0.69|ENSG00000253537|chr5:141384754-141384754|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	534.1973266601562	2	533.780013	1065.54547	-0.72977	-0.00038953	-0.35972	-0.00019201	-1.0895	-0.00058154	533.7797703565182	36.215	0.40558	36.215	36.033	36.439	0					15	7	3	0	0	0	0.79749	1	12105	12105		16.566	0.41677	1	2800200			17947	9862	12943	13039	17563	17563					0.015322510922715082
GLYTGEVRTA	10	Unmodified	_GLYTGEVRTA_					0	0	0		PCDHGA7|p.V619I|1|0.69|ENSG00000253537|chr5:141384754-141384754|G/A|missense_variant;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;ENSG00000253537|ENST00000518325|PCDHGA7	PCDHGA7|p.V619I|1|0.69|ENSG00000253537|chr5:141384754-141384754|G/A|missense_variant	PCDHGA7|p.V619I|1|0.69|ENSG00000253537|chr5:141384754-141384754|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1793212890625	2	533.780013	1065.54547	-0.98238	-0.00052437	0.24244	0.00012941	-0.73994	-0.00039496	533.7799196316512	35.438	0.45599	36.202	36.03	36.486	0.76338					13	8	2	0	0	0	0.85215	1	12878	12878		17.443	2.1942	1	3301400			17948	9862	12943	13039	17564	17564					0.015322510922715082
GLYTGQEYV	9	Unmodified	_GLYTGQEYV_					0	0	0		ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	MULTI-SECPEP	A375_MHC_IP_R2	2	1029.888427734375	1	1029.48875	1028.48148	0.13268	0.00013659	-0.82475	-0.00084907	-0.69207	-0.00071248	1029.4879394740904	69.358	0.40452	70.092	69.879	70.284	0.73421					13	7	2	0	0	0	0.011066	1	26266	26266		137.42	93.566	1	2362500			17949	8659	12944	13040	17565	17565					-0.03162529064661612
GLYTGQEYV	9	Unmodified	_GLYTGQEYV_					0	0	0		ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	MULTI-MATCH	A375_MHC_IP_R1	1		1	1029.48875	1028.48148	0.48378	0.00049805	-0.48199	-0.0004962	0.0017922	1.845E-06	1029.488124018088	70.04	0.40331	70.04	69.782	70.185	0	-0.026483	0.00018356	NaN	137.42	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2491800			17950	8659	12944	13040							-0.03162529064661612
GLYTGRCV	8	Unmodified	_GLYTGRCV_					0	0	0		nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-SECPEP	A375_MHC_IP_R1	1	435.2822265625	2	434.720913	867.427273	-0.18784	-8.1658E-05	0.275	0.00011955	0.087156	3.7889E-05	434.72094336382736	34.059	0.4549	34.059	33.95	34.405	0					10	8	2	0	0	0	0.972	1	11162	11162		2.0598	0.21551	1	949040			17951	1250	12945	13041	17566	17566					-0.011743996972313653
GLYTGRCV	8	Unmodified	_GLYTGRCV_					0	0	0		nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-MATCH	A375_MHC_IP_R2	2		2	434.720913	867.427273	-0.59759	-0.00025979	0.25521	0.00011094	-0.34239	-0.00014884	434.72097877246154	33.377	0.3052	34.13	33.942	34.247	0.75225	0.035379	-6.7172E-06	NaN	2.0598	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	949280			17952	1250	12945	13041							-0.011743996972313653
GLYVKDPQ	8	Unmodified	_GLYVKDPQ_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-SECPEP	A375_MHC_IP_R1	1	460.6479797363281	2	460.247818	918.481082	-0.12586	-5.7925E-05	0.81087	0.0003732	0.68502	0.00031528	460.2482078002239	42.329	0.70804	42.329	42.082	42.79	0					19	13	2	0	0	0	0.87023	1	14695	14695		16.149	6.766	1	2202300	+		17953	17258	12946	13042	17567	17567					0.01858096006139931
GMAERIPEL	9	Oxidation (M)	_GM(Oxidation (M))AERIPEL_		GM(1)AERIPEL		GM(76)AERIPEL	0	0	1		ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	MULTI-MSMS	A375_MHC_IP_R1	1	516.6813354492188	2	516.263142	1030.51173	-0.52156	-0.00026926	0.15778	8.1458E-05	-0.36378	-0.0001878	516.2632276935682	52.323	0.7125	52.323	51.879	52.592	0					39	13	4	0	0	0	0.029287	3	18588	18526;18588;18672		75.571	33.615	1	14738000			17954	3865	12947	13043	17568;17569;17570	17569		198			-0.0023049367111980246
GMAERIPEL	9	Oxidation (M)	_GM(Oxidation (M))AERIPEL_		GM(1)AERIPEL		GM(44)AERIPEL	0	0	1		ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	MULTI-MSMS	A375_MHC_IP_R1	1	516.6630249023438	2	516.263142	1030.51173	-0.84443	-0.00043595	0.42257	0.00021816	-0.42186	-0.00021779	516.2632785861196	67.243	0.71625	67.243	66.887	67.603	0					28	13	3	0	0	0	0.13728	1	24331	24331		43.982	17.714	1	2249600			17955	3865	12947	13043	17571	17571		198			-0.0023049367111980246
GMAERIPEL	9	Oxidation (M)	_GM(Oxidation (M))AERIPEL_		GM(1)AERIPEL		GM(68)AERIPEL	0	0	1		ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	MULTI-MSMS	A375_MHC_IP_R2	2	516.7017822265625	2	516.263142	1030.51173	-0.97431	-0.000503	0.087186	4.5011E-05	-0.88712	-0.00045799	516.2631233383822	51.543	0.71091	52.296	51.813	52.524	0.75225					32	13	3	0	0	0	0.04093	2	19452	19325;19452		67.838	28.967	1	19882000			17956	3865	12947	13043	17572;17573	17573		198			-0.0023049367111980246
GMAERIPEL	9	Oxidation (M)	_GM(Oxidation (M))AERIPEL_		GM(1)AERIPEL		GM(68)AERIPEL	0	0	1		ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	MULTI-MSMS	A375_MHC_IP_R2	2	516.6629638671875	2	516.263142	1030.51173	-0.91163	-0.00047064	0.23417	0.00012089	-0.67747	-0.00034975	516.2632802046186	66.279	0.81673	67.016	66.729	67.546	0.73631					27	15	2	0	0	0	0.04093	1	25122	25122		67.838	27.888	1	2426200			17957	3865	12947	13043	17574	17574		198			-0.0023049367111980246
GMAERIPEL	9	Unmodified	_GMAERIPEL_					0	0	0		ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	MULTI-SECPEP	A375_MHC_IP_R1	1	507.980224609375	2	508.265684	1014.51682	-0.70558	-0.00035862	-0.022327	-1.1348E-05	-0.72791	-0.00036997	508.26572300343224	67.183	0.6142	67.183	66.785	67.399	0					35	11	4	0	0	0	0.16595	1	24418	24418		61.602	32.52	1	8289900			17958	3865	12947	13044	17575	17575					0.010138101915003972
GMAERIPEL	9	Unmodified	_GMAERIPEL_					0	0	0		ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	MULTI-MSMS	A375_MHC_IP_R2	2	508.6651916503906	2	508.265684	1014.51682	-0.89719	-0.00045601	0.20189	0.00010262	-0.69529	-0.00035339	508.2657797857699	66.36	0.66342	67.097	66.627	67.29	0.73631					32	12	3	0	0	0	0.084766	1	25054	25054		53.404	30.668	1	9547600			17959	3865	12947	13044	17576	17576					0.010138101915003972
GMAIDLLHAAF	11	Unmodified	_GMAIDLLHAAF_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1;REV__ENSG00000198626|ENST00000366574|RYR2;REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-SECPEP	A375_MHC_IP_R2	2	387.2561950683594	3	386.870715	1157.59032	-0.45514	-0.00017608	3.1399	0.0012147	2.6847	0.0010386	386.87219543016363	20.101	0.40453	20.711	20.399	20.803	0.61029					9	7	2	0	0	0	0.98748	1	6112	6112		7.0371	0	1	1408100	+		17960	22171;22389;22428	12948	13045	17577	17577					0.017823586339545727
GMDNDFHHY	9	Oxidation (M)	_GM(Oxidation (M))DNDFHHY_		GM(1)DNDFHHY		GM(93)DNDFHHY	0	0	1		nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	MULTI-MSMS	A375_MHC_IP_R1	1	576.6140747070312	2	576.21418	1150.41381	0.19605	0.00011297	-0.47495	-0.00027367	-0.27889	-0.0001607	576.2138797303099	22.259	0.71069	22.259	22.062	22.773	0					25	13	3	0	0	0	0.012843	1	5973	5973		92.653	68.633	1	4143800			17961	1779	12949	13046	17578	17578		59			-0.15538302267123072
GMDNDFHHY	9	Oxidation (M)	_GM(Oxidation (M))DNDFHHY_		GM(1)DNDFHHY		GM(60)DNDFHHY	0	0	1		nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	MULTI-MSMS	A375_MHC_IP_R2	2	576.614013671875	2	576.21418	1150.41381	-0.51824	-0.00029862	0.13437	7.7425E-05	-0.38387	-0.00022119	576.2141350203195	21.877	0.5609	22.496	22.336	22.897	0.61932					18	10	2	0	0	0	0.06083	1	6930	6930		60.074	60.074	1	2814000			17962	1779	12949	13046	17579	17579		59			-0.15538302267123072
GMDNDFHHY	9	Unmodified	_GMDNDFHHY_					0	0	0		nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	MULTI-SECPEP	A375_MHC_IP_R1	1	379.5469970703125	3	379.146907	1134.41889	0.23602	8.9485E-05	-0.13932	-5.2824E-05	0.096694	3.6661E-05	379.1468253066107	27.605	0.45479	27.605	27.331	27.786	0					17	8	3	0	0	0	0.4465	1	8385	8385		31.268	26.371	1	6269600			17963	1779	12949	13047	17580	17580					-0.14293998404491504
GMDNDFHHY	9	Unmodified	_GMDNDFHHY_					0	0	0		nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	MULTI-MSMS	A375_MHC_IP_R2	2	568.6166381835938	2	568.216723	1134.41889	-0.50217	-0.00028534	0.38861	0.00022081	-0.11356	-6.4529E-05	568.2169256054973	26.939	0.35909	27.599	27.466	27.825	0.65992					12	6	3	0	0	0	0.037683	1	9196	9196		69.105	69.105	1	3429100			17964	1779	12949	13047	17581	17581					-0.14293998404491504
GMDNDFHHY	9	Unmodified	_GMDNDFHHY_					0	0	0		nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	MULTI-SECPEP	A375_MHC_IP_R2	2	379.5469665527344	3	379.146907	1134.41889	-0.05244	-1.9882E-05	0.14947	5.6673E-05	0.097034	3.679E-05	379.14691996043	26.975	0.51269	27.635	27.414	27.927	0.65992					22	9	3	0	0	0	0.34746	1	9170	9170		38.176	38.176	1	8410400			17965	1779	12949	13047	17582	17582					-0.14293998404491504
GMDNDFHHY	9	Unmodified	_GMDNDFHHY_					0	0	0		nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	MULTI-MATCH	A375_MHC_IP_R1	1		2	568.216723	1134.41889	-0.44369	-0.00025211	0.10776	6.1233E-05	-0.33592	-0.00019088	568.216788729218	27.592	0.30304	27.592	27.432	27.735	0	-0.0036877	-0.00014014	NaN	69.105	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2705900			17966	1779	12949	13047							-0.14293998404491504
GMFAGQLTKV	10	Unmodified	_GMFAGQLTKV_					0	0	0		nc|ENSG00000162836|Q9NPH0-2|ACP6;ENSG00000162836|ENST00000583509|ACP6	nc|ENSG00000162836|Q9NPH0-2|ACP6	nc|ENSG00000162836|Q9NPH0-2|ACP6	MULTI-SECPEP	A375_MHC_IP_R2	2	526.67431640625	2	526.283877	1050.5532	-0.53579	-0.00028198	0.50815	0.00026743	-0.027639	-1.4546E-05	526.2839185715312	66.886	0.30513	67.623	67.393	67.698	0.73631					10	5	2	0	0	0	0.41513	1	25322	25322		45.74	20.749	1	2216000			17967	6602	12950	13048	17583	17583					0.029946870881985888
GMGLTPPLFA	10	Unmodified	_GMGLTPPLFA_					0	0	0			REV__ENST00000369902.7_1_10:104391017-104391560:+|nuORF	REV__ENST00000369902.7_1_10:104391017-104391560:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	502.2044677734375	2	502.267696	1002.52084	-0.6575	-0.00033024	3.7696	0.0018933	3.1121	0.0015631	502.26715265740364	74.372	0.35718	75.11	74.958	75.315	0.73752					9	6	2	0	0	0	0.65248	1	28223	28223		16.942	4.4107	1	406630	+		17968	24023	12951	13049	17584	17584					0.019678996852007913
GMIDAFDEA	9	Unmodified	_GMIDAFDEA_					0	0	0		ENSG00000166401|ENST00000397985|SERPINB8;nc|ENSG00000166401|P50452-3|SERPINB8	ENSG00000166401|ENST00000397985|SERPINB8	ENSG00000166401|ENST00000397985|SERPINB8	MULTI-MSMS	A375_MHC_IP_R2	2	968.8043823242188	1	968.402974	967.395698	0.014718	1.4253E-05	0.35221	0.00034108	0.36692	0.00035533	968.4033190149001	93.084	0.50683	93.823	93.546	94.053	0.73902					14	9	2	0	0	0	0.0099443	1	35433	35433		120.45	80.493	1	1788300			17969	7069	12952	13050	17585	17585					-0.08930437241838263
GMIDAFDEA	9	Unmodified	_GMIDAFDEA_					0	0	0		ENSG00000166401|ENST00000397985|SERPINB8;nc|ENSG00000166401|P50452-3|SERPINB8	ENSG00000166401|ENST00000397985|SERPINB8	ENSG00000166401|ENST00000397985|SERPINB8	MULTI-MATCH	A375_MHC_IP_R1	1		1	968.402974	967.395698	0.1567	0.00015175	-0.062615	-6.0636E-05	0.094088	9.1115E-05	968.4029662986399	93.67	0.50794	93.67	93.433	93.941	0	-0.076355	-0.00016749	NaN	120.45	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2007900			17970	7069	12952	13050							-0.08930437241838263
GMILFKDW	8	Unmodified	_GMILFKDW_					0	0	0		ENST00000449005.5_1_1:787450-788079:+|nuORF	ENST00000449005.5_1_1:787450-788079:+|nuORF	ENST00000449005.5_1_1:787450-788079:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	506.6665344238281	2	505.262413	1008.51027	-0.36837	-0.00018612	-0.86926	-0.00043921	-1.2376	-0.00062533	505.2618368005323	75.179	0.85683	75.179	74.857	75.714	0					59	16	5	0	0	0	0.77515	1	27508	27508		12.532	3.9383	1	29068000			17971	12056	12953	13051	17586	17586					0.006359170307632667
GMIVSRRAL	9	Unmodified	_GMIVSRRAL_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB;ENST00000490114.1_1_20:37202892-37204542:+|nuORF	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-SECPEP	A375_MHC_IP_R2	2	502.192626953125	2	501.797486	1001.58042	-0.62238	-0.00031231	-4.2266	-0.0021209	-4.849	-0.0024332	501.793265792377	74.174	0.25243	74.911	74.757	75.009	0.73752					7	4	2	0	0	0	0.5212	1	28192	28192		20.415	2.2796	1	1100800			17972	7511	12954	13052	17587	17587					0.07969215419257125
GMLDGLVNV	9	Oxidation (M)	_GM(Oxidation (M))LDGLVNV_		GM(1)LDGLVNV		GM(110)LDGLVNV	0	0	1		nc|ENSG00000077232|Q8IXB1-3|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10	nc|ENSG00000077232|Q8IXB1-3|DNAJC10	nc|ENSG00000077232|Q8IXB1-3|DNAJC10	MULTI-MSMS	A375_MHC_IP_R1	1	933.3405151367188	1	933.470994	932.463718	0.03547	3.311E-05	-0.10977	-0.00010247	-0.074299	-6.9356E-05	933.4711092759161	93.523	0.61113	93.523	93.329	93.941	0					28	11	3	0	0	0	0.0098183	1	34369	34369		114.65	55.97	1	10903000			17973	1648	12955	13053	17588	17588		53			-0.005215675911699691
GMLDGLVNV	9	Oxidation (M)	_GM(Oxidation (M))LDGLVNV_		GM(1)LDGLVNV		GM(100)LDGLVNV	0	0	1		nc|ENSG00000077232|Q8IXB1-3|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10	nc|ENSG00000077232|Q8IXB1-3|DNAJC10	nc|ENSG00000077232|Q8IXB1-3|DNAJC10	MULTI-MSMS	A375_MHC_IP_R1	1	467.6390686035156	2	467.239135	932.463718	-0.21389	-9.994E-05	0.31948	0.00014927	0.10558	4.9333E-05	467.2392305496817	93.63	0.66135	93.63	93.329	93.991	0					29	12	3	0	0	0	0.0093345	1	34429	34429		104.8	40.563	1	3634900			17974	1648	12955	13053	17589	17589		53			-0.005215675911699691
GMLDGLVNV	9	Oxidation (M)	_GM(Oxidation (M))LDGLVNV_		GM(1)LDGLVNV		GM(100)LDGLVNV	0	0	1		nc|ENSG00000077232|Q8IXB1-3|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10	nc|ENSG00000077232|Q8IXB1-3|DNAJC10	nc|ENSG00000077232|Q8IXB1-3|DNAJC10	MULTI-SECPEP	A375_MHC_IP_R1	1	467.6386413574219	2	467.239135	932.463718	-0.10436	-4.8759E-05	-0.34744	-0.00016234	-0.4518	-0.0002111	467.2389330172431	93.151	0.45876	93.151	92.871	93.329	0					16	8	2	0	0	0	0.023756	1	34221	34221		104.8	41.236	1	4266700			17975	1648	12955	13053	17590	17590		53			-0.005215675911699691
GMLDGLVNV	9	Oxidation (M)	_GM(Oxidation (M))LDGLVNV_		GM(1)LDGLVNV		GM(78)LDGLVNV	0	0	1		nc|ENSG00000077232|Q8IXB1-3|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10	nc|ENSG00000077232|Q8IXB1-3|DNAJC10	nc|ENSG00000077232|Q8IXB1-3|DNAJC10	MULTI-MSMS	A375_MHC_IP_R2	2	467.6389465332031	2	467.239135	932.463718	-0.55647	-0.00026	-0.070417	-3.2902E-05	-0.62688	-0.0002929	467.2390444205001	92.376	0.55609	93.115	92.836	93.392	0.73902					19	10	2	0	0	0	0.026461	1	35116	35116		77.984	31.063	1	4769100			17976	1648	12955	13053	17591	17591		53			-0.005215675911699691
GMLDGLVNV	9	Oxidation (M)	_GM(Oxidation (M))LDGLVNV_		GM(1)LDGLVNV		GM(100)LDGLVNV	0	0	1		nc|ENSG00000077232|Q8IXB1-3|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10	nc|ENSG00000077232|Q8IXB1-3|DNAJC10	nc|ENSG00000077232|Q8IXB1-3|DNAJC10	MULTI-MSMS	A375_MHC_IP_R2	2	467.6391906738281	2	467.239135	932.463718	-0.55796	-0.0002607	0.61145	0.00028569	0.053493	2.4994E-05	467.2393355949557	92.923	0.96458	93.662	93.392	94.356	0.73902					32	18	3	0	0	0	0.0093345	1	35318	35318		104.8	50.026	1	5560200			17977	1648	12955	13053	17592	17592		53			-0.005215675911699691
GMLDGLVNV	9	Oxidation (M)	_GM(Oxidation (M))LDGLVNV_		GM(1)LDGLVNV		GM(56)LDGLVNV	0	0	1		nc|ENSG00000077232|Q8IXB1-3|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10	nc|ENSG00000077232|Q8IXB1-3|DNAJC10	nc|ENSG00000077232|Q8IXB1-3|DNAJC10	MULTI-MSMS	A375_MHC_IP_R2	2	933.23828125	1	933.470994	932.463718	-0.08528	-7.9607E-05	-0.5899	-0.00055065	-0.67518	-0.00063026	933.4709861249706	100.55	0.87267	101.31	101.03	101.9	0.76278					21	16	2	0	0	0	0.070818	1	38177	38177		56.177	18.203	1	1840700			17978	1648	12955	13053	17593	17593		53			-0.005215675911699691
GMLDGLVNV	9	Oxidation (M)	_GM(Oxidation (M))LDGLVNV_					0	0	1		nc|ENSG00000077232|Q8IXB1-3|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10	nc|ENSG00000077232|Q8IXB1-3|DNAJC10	nc|ENSG00000077232|Q8IXB1-3|DNAJC10	MULTI-MATCH	A375_MHC_IP_R1	1		1	933.470994	932.463718	0.025841	2.4122E-05	-0.18777	-0.00017528	-0.16193	-0.00015116	933.470465585654	101.43	1.0632	101.43	100.94	102	0	0.059774	0.00015181	NaN	56.177	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2461800			17979	1648	12955	13053				53			-0.005215675911699691
GMLDGLVNV	9	Oxidation (M)	_GM(Oxidation (M))LDGLVNV_					0	0	1		nc|ENSG00000077232|Q8IXB1-3|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10	nc|ENSG00000077232|Q8IXB1-3|DNAJC10	nc|ENSG00000077232|Q8IXB1-3|DNAJC10	MULTI-MATCH	A375_MHC_IP_R2	2		1	933.470994	932.463718	-0.17855	-0.00016667	0.11074	0.00010337	-0.067817	-6.3305E-05	933.4711016386412	92.883	0.609	93.622	93.392	94.001	0.73902	0.049042	8.2969E-05	NaN	114.65	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12662000			17980	1648	12955	13053				53			-0.005215675911699691
GMLDLVKKV	9	Unmodified	_GMLDLVKKV_					0	0	0		ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	MULTI-SECPEP	A375_MHC_IP_R2	2	502.2044677734375	2	501.804445	1001.59434	-0.63315	-0.00031772	0.01258	6.3125E-06	-0.62057	-0.00031141	501.8043758465541	74.297	0.5582	75.035	74.655	75.214	0.73752					13	10	2	0	0	0	0.074405	1	28223	28223		61.602	21.652	1	2976700			17981	2272	12956	13054	17594	17594					0.09360448127688414
GMLPDPKNV	9	Unmodified	_GMLPDPKNV_					0	0	0		ENST00000491736.1_1_4:186066902-186068122:+|nuORF;ENSG00000151729|ENST00000281456|SLC25A4	ENST00000491736.1_1_4:186066902-186068122:+|nuORF	ENST00000491736.1_1_4:186066902-186068122:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	486.1544189453125	2	485.754953	969.495352	-0.8995	-0.00043693	-0.37633	-0.0001828	-1.2758	-0.00061974	485.7548745962213	54.182	0.76128	54.933	54.661	55.422	0.75079					22	14	3	0	0	0	0.63327	1	20486	20486		18.146	3.5647	1	1650900			17982	5925	12957	13055	17595	17595					0.009384251627807316
GMLPDPKNV	9	Unmodified	_GMLPDPKNV_					0	0	0		ENST00000491736.1_1_4:186066902-186068122:+|nuORF;ENSG00000151729|ENST00000281456|SLC25A4	ENST00000491736.1_1_4:186066902-186068122:+|nuORF	ENST00000491736.1_1_4:186066902-186068122:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	485.754953	969.495352	-0.2557	-0.00012421	-0.59341	-0.00028825	-0.84911	-0.00041246	485.75475145317574	54.897	0.71152	54.897	54.516	55.228	0	-0.017952	-0.00012549	NaN	18.146	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1271600			17983	5925	12957	13055							0.009384251627807316
GMLSAITNV	9	Unmodified	_GMLSAITNV_					0	0	0		ENSG00000197712|ENST00000358869|FAM114A1	ENSG00000197712|ENST00000358869|FAM114A1	ENSG00000197712|ENST00000358869|FAM114A1	MULTI-MSMS	A375_MHC_IP_R2	2	453.6413879394531	2	453.241678	904.468803	-0.23276	-0.0001055	-0.15568	-7.0561E-05	-0.38844	-0.00017606	453.2415953753934	102.89	0.40767	103.66	103.48	103.89	0.76428					13	7	2	0	0	0	0.098973	1	39004	39004		50.855	14.811	1	1519900			17984	9186	12958	13056	17596	17596					0.012747362714321753
GMMLIQPKHK	10	Unmodified	_GMMLIQPKHK_					0	0	0			REV__ENSG00000283378|ENST00000636699|CNTNAP3C	REV__ENSG00000283378|ENST00000636699|CNTNAP3C	MSMS	A375_MHC_IP_R1	1	394.7466735839844	3	394.887711	1181.6413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.05	1	19.05	18.55	19.55	0								0	0	0	0.15637	1	4585	4585		0.15932	0	1		+		17985	17462	12959	13057	17597	17597					0.05774984407139527
GMMSTVTEV	9	2 Oxidation (M)	_GM(Oxidation (M))M(Oxidation (M))STVTEV_		GM(1)M(1)STVTEV		GM(60)M(60)STVTEV	0	0	2		nc|ENSG00000136813|Q5VYK3|ECPAS;ENSG00000136813|ENST00000684092|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-MSMS	A375_MHC_IP_R1	1	494.1117248535156	2	493.712093	985.409633	-0.58582	-0.00028923	0.014192	7.0067E-06	-0.57163	-0.00028222	493.71203693960695	32.624	0.60503	32.624	32.333	32.938	0					19	11	2	0	0	0	0.060021	1	10578	10578		60.39	28.273	1	2687000			17986	4820	12960	13058	17598	17598		252;253			-0.08365527805028705
GMMSTVTEV	9	2 Oxidation (M)	_GM(Oxidation (M))M(Oxidation (M))STVTEV_		GM(1)M(1)STVTEV		GM(74)M(74)STVTEV	0	0	2		nc|ENSG00000136813|Q5VYK3|ECPAS;ENSG00000136813|ENST00000684092|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-MSMS	A375_MHC_IP_R2	2	494.1117858886719	2	493.712093	985.409633	-0.50811	-0.00025086	0.025816	1.2746E-05	-0.4823	-0.00023812	493.7120650631392	32.023	0.55677	32.76	32.504	33.061	0.73692					16	10	2	0	0	0	0.03063	1	11359	11359		74.423	30.016	1	2777000			17987	4820	12960	13058	17599	17599		252;253			-0.08365527805028705
GMNNDDARL	9	Unmodified	_GMNNDDARL_					0	0	0			REV__ENST00000502726.5_1_4:47685742-47840047:-|nuORF	REV__ENST00000502726.5_1_4:47685742-47840047:-|nuORF	MSMS	A375_MHC_IP_R1	1	503.1755676269531	2	503.224548	1004.43454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.615	1	98.615	98.115	99.115	0								0	0	0	0.15486	1	36231	36231		10.824	1.4765	1		+		17988	19469	12961	13059	17600	17600					-0.06749711887459853
GMPDFLEKL	9	Unmodified	_GMPDFLEKL_					0	0	0		ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	MULTI-MSMS	A375_MHC_IP_R1	1	525.6702880859375	2	525.270435	1048.52632	-0.26848	-0.00014102	-0.28083	-0.00014751	-0.5493	-0.00028853	525.2701597225633	109.53	0.56071	109.53	109.22	109.78	0					20	10	2	0	0	0	0.10622	1	40163	40163		49.554	27.808	1	4211600			17989	1793	12962	13060	17601	17601					0.003995784770268074
GMPDFLEKL	9	Unmodified	_GMPDFLEKL_					0	0	0		ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	MULTI-MSMS	A375_MHC_IP_R2	2	525.669921875	2	525.270435	1048.52632	-0.45091	-0.00023685	0.12067	6.3382E-05	-0.33025	-0.00017347	525.2701196909823	108.6	0.61147	109.35	109.06	109.67	0.74684					26	11	3	0	0	0	0.054426	1	40987	40987		62.573	37.899	1	4347000			17990	1793	12962	13060	17602	17602					0.003995784770268074
GMPSLTPMPV	10	Unmodified	_GMPSLTPMPV_					0	0	0			REV__ENSG00000116128|ENST00000234739|BCL9	REV__ENSG00000116128|ENST00000234739|BCL9	MULTI-MSMS	A375_MHC_IP_R2	2	515.179443359375	2	515.259013	1028.50347	-0.82914	-0.00042722	1.1058	0.00056976	0.27664	0.00014254	515.2630674916811	74.782	0.45668	75.519	75.264	75.721	0.73752					22	8	4	0	0	0	0.65248	1	28361	28361		16.942	1.0951	1	2786800	+		17991	17939	12963	13061	17603	17603					-0.009637639121137909
GMQGAGIQGV	10	Oxidation (M)	_GM(Oxidation (M))QGAGIQGV_		GM(1)QGAGIQGV		GM(100)QGAGIQGV	0	0	1		ENSG00000177613|ENST00000331173|CSTF2T	ENSG00000177613|ENST00000331173|CSTF2T	ENSG00000177613|ENST00000331173|CSTF2T	MULTI-MSMS	A375_MHC_IP_R1	1	467.62603759765625	2	467.226559	932.438566	-0.28355	-0.00013248	0.33657	0.00015725	0.053019	2.4772E-05	467.2266309325392	37.645	0.51024	37.645	37.505	38.016	0					15	9	2	0	0	0	0.0038543	1	12737	12737		99.799	45.025	1	1870300			17992	8095	12964	13062	17604	17604		397			-0.030356223937246796
GMWLRLRRLFL	11	Unmodified	_GMWLRLRRLFL_					0	0	0			REV__nc|ENSG00000008710|P98161-2|PKD1	REV__nc|ENSG00000008710|P98161-2|PKD1	MSMS	A375_MHC_IP_R1	1	487.6935729980469	3	487.627219	1459.85983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.01	1	139.01	138.51	139.51	0								0	0	0	0.16331	1	53448	53448		0.50596	0	1		+		17993	16177	12965	13063	17605	17605					0.14829337040987411
GMYIFLHTV	9	Unmodified	_GMYIFLHTV_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-SECPEP	A375_MHC_IP_R1	1	540.5216064453125	2	540.78097	1079.54739	-0.5706	-0.00030857	0.72992	0.00039473	0.15932	8.6159E-05	540.7808663491325	101.77	0.65752	101.77	101.5	102.15	0					20	12	2	0	0	0	0.025883	1	37394	37394		77.984	66.344	1	3158300			17994	7676	12966	13064	17606	17606					0.010795885765219282
GMYIFLHTV	9	Oxidation (M)	_GM(Oxidation (M))YIFLHTV_		GM(1)YIFLHTV		GM(48)YIFLHTV	0	0	1		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-SECPEP	A375_MHC_IP_R1	1	549.1923828125	2	548.778428	1095.5423	-0.74269	-0.00040757	-0.25801	-0.00014159	-1.0007	-0.00054916	548.7770688244273	84.881	1.6299	84.881	84.341	85.971	0					43	31	2	0	0	0	0.28475	1	31341	31341		48.346	30.199	1	1423000			17995	7676	12966	13065	17607	17607		385			-0.0016471528608690278
GMYPNLVHV	9	Unmodified	_GMYPNLVHV_					0	0	0		ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	MULTI-MSMS	A375_MHC_IP_R1	1	515.1793212890625	2	515.262945	1028.51134	-0.53069	-0.00027344	-0.00035563	-1.8324E-07	-0.53104	-0.00027363	515.2627786658359	75.589	0.35086	75.589	75.413	75.764	0					11	6	2	0	0	0	0.63811	1	27603	27603		12.532	2.3482	1	2321500			17996	1194	12967	13066	17608	17608					-0.0017786860032629193
GNAAIDSLLNY	11	Unmodified	_GNAAIDSLLNY_					0	0	0		ENST00000534570.5_1_X:74291521-74293592:-|nuORF;nc|ENSG00000131269|O75027-3|ABCB7;ENSG00000131269|ENST00000373394|ABCB7;nc|ENSG00000131269|O75027-2|ABCB7	ENST00000534570.5_1_X:74291521-74293592:-|nuORF	ENST00000534570.5_1_X:74291521-74293592:-|nuORF	MSMS	A375_MHC_IP_R2	2	575.7159423828125	2	575.790578	1149.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.618	1	64.358	63.858	64.858	0.74022								0	0	0	0.15016	1	24123	24123		20.415	1.0526	1				17997	4319	12968	13067	17609	17609					-0.002197835988681618
GNAGRATC	8	Unmodified	_GNAGRATC_					0	0	0		ENST00000442909.2_1:146374131-146378624:+|nuORF;ENST00000446760.2_1:146374131-146378624:+|nuORF	ENST00000442909.2_1:146374131-146378624:+|nuORF	ENST00000442909.2_1:146374131-146378624:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	748.6463012695312	1	749.335898	748.328621	-0.5277	-0.00039542	-0.60411	-0.00045268	-1.1318	-0.0008481	749.335253122711	61.509	0.66387	61.509	61.279	61.943	0					20	12	2	0	0	0	0.972	1	22293	22293		2.5775	0	1	3656300			17998	12001	12969	13068	17610	17610					-0.055610029422837215
GNAGRATC	8	Unmodified	_GNAGRATC_					0	0	0		ENST00000442909.2_1:146374131-146378624:+|nuORF;ENST00000446760.2_1:146374131-146378624:+|nuORF	ENST00000442909.2_1:146374131-146378624:+|nuORF	ENST00000442909.2_1:146374131-146378624:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	749.335898	748.328621	-1.1669	-0.00087437	-0.55877	-0.00041871	-1.7256	-0.0012931	749.3352698980455	60.874	0.65742	61.619	61.211	61.869	0.74503	0.05512	1.5868E-05	NaN	2.5775	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3507500			17999	12001	12969	13068							-0.055610029422837215
GNFCLFRSE	9	Unmodified	_GNFCLFRSE_					0	0	0		ENST00000467842.1_1_3:133494266-133496087:+|nuORF;ENST00000461695.1_1_3:133489395-133497461:+|nuORF;nc|ENSG00000091513|P02787|TF;ENSG00000091513|ENST00000402696|TF	ENST00000467842.1_1_3:133494266-133496087:+|nuORF	ENST00000467842.1_1_3:133494266-133496087:+|nuORF	MSMS	A375_MHC_IP_R1	1	536.6764526367188	2	536.747659	1071.48076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.555	1	96.555	96.055	97.055	0								0	0	0	0.1535	1	35484	35484		15.847	4.2069	1				18000	1981	12970	13069	17611	17611					-0.05211646985367224
GNFQNSGDFY	10	Unmodified	_GNFQNSGDFY_					0	0	0		ADAM18|p.K671N|1|0.26|ENSG00000168619|chr8:39706900-39706900|A/T|missense_variant	ADAM18|p.K671N|1|0.26|ENSG00000168619|chr8:39706900-39706900|A/T|missense_variant	ADAM18|p.K671N|1|0.26|ENSG00000168619|chr8:39706900-39706900|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	575.1353149414062	2	574.735803	1147.45705	-0.11906	-6.8426E-05	-0.49048	-0.00028189	-0.60953	-0.00035032	574.7355824977757	91.448	0.65982	92.183	91.767	92.427	0.73451					23	12	2	0	0	0	0.9269	1	34802	34802		6.7232	0	1	1832600			18001	43	12971	13070	17612	17612					-0.11077789218188627
GNGKNVYF	8	Unmodified	_GNGKNVYF_					0	0	0			REV__ENSG00000137699|ENST00000341846|TRIM29	REV__ENSG00000137699|ENST00000341846|TRIM29	MULTI-MSMS	A375_MHC_IP_R1	1	449.6737060546875	2	449.72451	897.434466	0.054956	2.4715E-05	-0.4203	-0.00018902	-0.36534	-0.0001643	449.72430765229836	45.719	0.40597	45.719	45.484	45.89	0					12	7	2	0	0	0	0.75322	1	15968	15968		19.439	1.304	1	1538600	+		18002	19026	12972	13071	17613	17613					-0.018353438251438092
GNGKNVYF	8	Unmodified	_GNGKNVYF_					0	0	0			REV__ENSG00000137699|ENST00000341846|TRIM29	REV__ENSG00000137699|ENST00000341846|TRIM29	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	449.72451	897.434466	0.054956	2.4715E-05	-0.4203	-0.00018902	-0.36534	-0.0001643	449.72430765229836	45.719	0.40597	45.719	45.484	45.89	0	0.036706	-0.00030587	NaN	19.439	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1538600	+		18003	19026	12972	13071							-0.018353438251438092
GNGLLEGSEEC	11	Unmodified	_GNGLLEGSEEC_					0	0	0		nc|ENSG00000196115|Q6NVV9-3|ADAM5	nc|ENSG00000196115|Q6NVV9-3|ADAM5	nc|ENSG00000196115|Q6NVV9-3|ADAM5	MSMS	A375_MHC_IP_R1	1	554.1591796875	2	554.234778	1106.455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.822	1	66.822	66.322	67.322	0								0	0	0	0.15541	1	24209	24209		17.113	8.5196	1				18004	14832	12973	13072	17614	17614					-0.09396586018283415
GNGLLEGSEEC	11	Unmodified	_GNGLLEGSEEC_					0	0	0		nc|ENSG00000196115|Q6NVV9-3|ADAM5	nc|ENSG00000196115|Q6NVV9-3|ADAM5	nc|ENSG00000196115|Q6NVV9-3|ADAM5	MSMS	A375_MHC_IP_R2	2	554.158935546875	2	554.234778	1106.455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.18	1	66.918	66.418	67.418	0.73811								0	0	0	0.15541	1	25082	25082		17.113	8.9574	1				18005	14832	12973	13072	17615	17615					-0.09396586018283415
GNGSSCRH	8	Unmodified	_GNGSSCRH_					0	0	0		ENST00000562866.1_1_16:89782895-89783186:+|nuORF;ENST00000562298.1_1_16:89782967-89783961:+|nuORF	ENST00000562866.1_1_16:89782895-89783186:+|nuORF	ENST00000562866.1_1_16:89782895-89783186:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	819.3078002929688	1	817.33696	816.329684	-0.33192	-0.00027129	-0.2757	-0.00022534	-0.60762	-0.00049663	817.3371857137131	118.4	2.5354	118.4	117.31	119.84	0					89	49	3	0	0	0	0.77643	1	43643	43643		7.9102	2.1497	1	706810000			18006	13516	12974	13073	17616	17616					-0.08582788573357902
GNGSSCRH	8	Unmodified	_GNGSSCRH_					0	0	0		ENST00000562866.1_1_16:89782895-89783186:+|nuORF;ENST00000562298.1_1_16:89782967-89783961:+|nuORF	ENST00000562866.1_1_16:89782895-89783186:+|nuORF	ENST00000562866.1_1_16:89782895-89783186:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	817.33696	816.329684	-0.72244	-0.00059048	0.51287	0.00041919	-0.20956	-0.00017128	817.3374756420775	117.86	1.6216	118.47	117.43	119.05	0.60909	0.033019	0.0002896	NaN	7.9102	53	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	980410000			18007	13516	12974	13073							-0.08582788573357902
GNNDYFLA	8	Unmodified	_GNNDYFLA_					0	0	0		PTPRR|p.H28Y|1|0.32|ENSG00000153233|chr12:70892954-70892954|G/A|missense_variant	PTPRR|p.H28Y|1|0.32|ENSG00000153233|chr12:70892954-70892954|G/A|missense_variant	PTPRR|p.H28Y|1|0.32|ENSG00000153233|chr12:70892954-70892954|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	457.17828369140625	2	457.20615	912.397747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.93	1	140.93	140.43	141.43	0								0	0	0	0.16876	1	54113	54113		0.79363	0	1				18008	15253	12975	13074	17617	17617					-0.06195640441717387
GNPITIFEVR	10	Unmodified	_GNPITIFEVR_					0	0	0		ENST00000503632.1_1_19:47061900-47062413:+|nuORF	ENST00000503632.1_1_19:47061900-47062413:+|nuORF	ENST00000503632.1_1_19:47061900-47062413:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	382.9487609863281	3	382.548629	1144.62406	0.28526	0.00010913	0.25676	9.8222E-05	0.54202	0.00020735	382.5486241657466	31.33	0.45551	31.33	31.109	31.565	0					17	8	3	0	0	0	0.70012	1	10066	10066		10.899	3.7972	1	2984800			18009	12807	12976	13075	17618	17618					0.05753103397364612
GNPITIFEVR	10	Unmodified	_GNPITIFEVR_					0	0	0		ENST00000503632.1_1_19:47061900-47062413:+|nuORF	ENST00000503632.1_1_19:47061900-47062413:+|nuORF	ENST00000503632.1_1_19:47061900-47062413:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	382.548629	1144.62406	0.28526	0.00010913	0.25676	9.8222E-05	0.54202	0.00020735	382.5486241657466	31.33	0.45551	31.33	31.109	31.565	0	0.029228	0.00031104	NaN	10.899	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2984800			18010	12807	12976	13075							0.05753103397364612
GNPPEKPSYL	10	Unmodified	_GNPPEKPSYL_					0	0	0			REV__ENSG00000198728|ENST00000673968|LDB1	REV__ENSG00000198728|ENST00000673968|LDB1	MULTI-SECPEP	A375_MHC_IP_R1	1	551.6998901367188	2	551.282389	1100.55022	-0.48674	-0.00026833	1.2579	0.00069348	0.77119	0.00042515	551.7848737804952	55.939	1.32	55.939	54.924	56.244	0					48	25	3	0	0	0	0.79457	1	19664	19664		26.268	4.5215	1	2346200	+		18011	22404	12977	13076	17619	17619					0.003971352350617963
GNPPLRPQ	8	Unmodified	_GNPPLRPQ_					0	0	0			REV__ENST00000570069.5_1_16:1828464-1828845:+|nuORF	REV__ENST00000570069.5_1_16:1828464-1828845:+|nuORF	MSMS	A375_MHC_IP_R2	2	439.66607666015625	2	439.745776	877.477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.516	1	41.291	40.791	41.791	0.77451								0	0	0	0.16876	1	15005	15005		11.64	0.81637	1		+		18012	26275	12978	13077	17620	17620					0.033360513030856964
GNPSEELGEFP	11	Unmodified	_GNPSEELGEFP_					0	0	0			REV__ENSG00000198934|ENST00000361470|MAGEE1	REV__ENSG00000198934|ENST00000361470|MAGEE1	MULTI-MSMS	A375_MHC_IP_R1	1	588.6635131835938	2	588.264393	1174.51423	-0.24427	-0.0001437	-0.16644	-9.7912E-05	-0.41071	-0.00024161	588.2641649632758	57.178	0.56145	57.178	56.905	57.467	0					21	10	3	0	0	0	0.38403	1	20495	20495		40.239	0	1	7365500	+		18013	22453	12979	13078	17621	17621					-0.06604366732472045
GNPSEELGEFP	11	Unmodified	_GNPSEELGEFP_					0	0	0			REV__ENSG00000198934|ENST00000361470|MAGEE1	REV__ENSG00000198934|ENST00000361470|MAGEE1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	588.264393	1174.51423	-0.95607	-0.00056242	-0.076352	-4.4915E-05	-1.0324	-0.00060734	588.2639609277578	56.556	0.7137	57.307	56.948	57.662	0.75014	0.06447	8.7004E-05	NaN	40.239	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4489900	+		18014	22453	12979	13078							-0.06604366732472045
GNRAGPFF	8	Unmodified	_GNRAGPFF_					0	0	0		ENST00000355739.8_3_13:103498044-103498317:+|nuORF	ENST00000355739.8_3_13:103498044-103498317:+|nuORF	ENST00000355739.8_3_13:103498044-103498317:+|nuORF	MSMS	A375_MHC_IP_R2	2	433.1602478027344	2	433.219395	864.424236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.72	1	132.89	132.39	133.39	0.16487								0	0	0	0.16876	1	52210	52210		2.8892	0	1				18015	10956	12980	13079	17622	17622					-0.013399067597106296
GNRLFSKKF	9	Unmodified	_GNRLFSKKF_					0	0	0			REV__ENSG00000144452|ENST00000272895|ABCA12	REV__ENSG00000144452|ENST00000272895|ABCA12	MULTI-MSMS	A375_MHC_IP_R1	1	366.6051025390625	3	366.213581	1095.61891	0.15323	5.6115E-05	-0.74025	-0.00027109	-0.58702	-0.00021498	366.2146384190497	27.508	0.50517	27.508	27.229	27.735	0					19	9	3	0	0	0	0.50892	1	8444	8444		19.362	4.9566	1	1662600	+		18016	19424	12981	13080	17623	17623					0.07492844325406622
GNSRGNLLCFH	11	Unmodified	_GNSRGNLLCFH_					0	0	0		ENSG00000182348|ENST00000333190|ZNF804B;ZNF804B|p.L810Tfs*20|1|0.34|ENSG00000182348|chr7:89335404-89335405|-/A|frameshift_variant	ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	MULTI-SECPEP	A375_MHC_IP_R1	1	406.62066650390625	3	406.532985	1216.57712	-0.29804	-0.00012117	-0.17037	-6.926E-05	-0.46841	-0.00019043	406.8671859284836	73.637	0.55692	73.637	73.386	73.943	0					18	10	2	0	0	0	0.99424	1	26819	26819		6.6235	6.6235	1	1570400			18017	8401	12982	13081	17624	17624					-0.022500794254028733
GNVFIRPVT	9	Unmodified	_GNVFIRPVT_					0	0	0			REV__ENSG00000023572|ENST00000367439|GLRX2	REV__ENSG00000023572|ENST00000367439|GLRX2	MULTI-SECPEP	A375_MHC_IP_R2	2	502.189208984375	2	501.790184	1001.56581	-0.67503	-0.00033872	-0.2034	-0.00010206	-0.87842	-0.00044078	501.7899728037451	70.806	0.25299	71.54	71.453	71.706	0.73421					5	4	2	0	0	0	0.39388	1	26880	26880		19.257	4.0085	1	2563200	+		18018	16280	12983	13082	17625	17625					0.06509466542752307
GPACKRPS	8	Unmodified	_GPACKRPS_					0	0	0			REV__ENST00000393913.7_1_2:75749606-75787936:-|nuORF	REV__ENST00000393913.7_1_2:75749606-75787936:-|nuORF	MSMS	A375_MHC_IP_R2	2	408.2474670410156	2	408.213255	814.411957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.69	1	28.369	27.869	28.869	0.67857								0	0	0	0.16876	1	9495	9495		7.2892	1.5288	1		+		18019	24299	12984	13083	17626	17626					-0.002672664944157077
GPAEATPL	8	Unmodified	_GPAEATPL_					0	0	0			REV__ENSG00000150961|ENST00000280551|SEC24D	REV__ENSG00000150961|ENST00000280551|SEC24D	MULTI-MSMS	A375_MHC_IP_R1	1	756.4558715820312	1	755.393396	754.386119	-0.89667	-0.00067734	-0.12949	-9.7814E-05	-1.0262	-0.00077515	755.3933650837027	67.892	0.75949	67.892	67.5	68.26	0					24	14	2	0	0	0	0.77123	1	24520	24520		14.582	4.3983	1	5907900	+		18020	19732	12985	13084	17627	17627					-0.0008983746504327428
GPAGFKAP	8	Unmodified	_GPAGFKAP_					0	0	0		ENSG00000148826|ENST00000368592|NKX6-2	ENSG00000148826|ENST00000368592|NKX6-2	ENSG00000148826|ENST00000368592|NKX6-2	MULTI-SECPEP	A375_MHC_IP_R1	1	372.5955505371094	2	372.705589	743.396624	0.20765	7.7391E-05	0.47992	0.00017887	0.68756	0.00025626	372.7056970149289	47.054	0.4125	47.054	46.85	47.263	0					11	7	2	0	0	0	0.972	1	16593	16593		2.5775	0	1	1393800			18021	5764	12986	13085	17628	17628					0.014661899800330502
GPAHTWNVMF	10	Unmodified	_GPAHTWNVMF_					0	0	0			REV__ENST00000432943.6_1_8:121160081-121289735:+|nuORF	REV__ENST00000432943.6_1_8:121160081-121289735:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1159.9351806640625	1	1159.53533	1158.52805	0.076659	8.8888E-05	-2.4621	-0.0028549	-2.3855	-0.002766	1159.5304821066009	106.96	0.55721	107.72	107.55	108.1	0.75977					25	10	3	0	0	0	0.71466	1	40544	40544		5.7319	2.1354	1	3715000	+		18022	22060	12987	13086	17629	17629					-0.044873677143641544
GPAHTWNVMF	10	Unmodified	_GPAHTWNVMF_					0	0	0			REV__ENST00000432943.6_1_8:121160081-121289735:+|nuORF	REV__ENST00000432943.6_1_8:121160081-121289735:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	1159.53533	1158.52805	0.26369	0.00030575	-3.2085	-0.0037203	-2.9448	-0.0034146	1159.5312607762014	107.69	0.56096	107.69	107.44	108	0	-0.015054	-0.00028282	NaN	5.7319	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3075100	+		18023	22060	12987	13086							-0.044873677143641544
GPAHTWNVMF	10	Unmodified	_GPAHTWNVMF_					0	0	0			REV__ENST00000432943.6_1_8:121160081-121289735:+|nuORF	REV__ENST00000432943.6_1_8:121160081-121289735:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	1159.53533	1158.52805	0.076659	8.8888E-05	-2.4621	-0.0028549	-2.3855	-0.002766	1159.5304821066009	106.96	0.55721	107.72	107.55	108.1	0.75977	0.015054	0.00058259	NaN	5.7319	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3715000	+		18024	22060	12987	13086							-0.044873677143641544
GPALDVIRVLK	11	Unmodified	_GPALDVIRVLK_					0	0	0		ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	MSMS	A375_MHC_IP_R2	2	590.8733520507812	2	590.874248	1179.73394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.58	1	121.05	120.55	121.55	0.47139								0	0	0	0.1624	1	46028	46028		6.2058	0.47393	1				18025	7007	12988	13087	17630	17630					0.15126528736573164
GPAMERPLPME	11	Unmodified	_GPAMERPLPME_					0	0	0		nc|ENSG00000198758|Q8TE67-2|EPS8L3;ENSG00000198758|ENST00000361965|EPS8L3;nc|ENSG00000198758|Q8TE67-3|EPS8L3	nc|ENSG00000198758|Q8TE67-2|EPS8L3	nc|ENSG00000198758|Q8TE67-2|EPS8L3	MSMS	A375_MHC_IP_R1	1	614.6555786132812	2	614.296659	1226.57876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.12	1	117.12	116.62	117.62	0								0	0	0	0.16124	1	42979	42979		12.241	0.74595	1				18026	9320	12989	13088	17631	17631					-0.02546206451688704
GPAPVPGPG	9	Unmodified	_GPAPVPGPG_					0	0	0			REV__POLG|p.V185Yfs*81|1|0.55|ENSG00000140521|chr15:89333202-89333202|C/-|frameshift_variant	REV__POLG|p.V185Yfs*81|1|0.55|ENSG00000140521|chr15:89333202-89333202|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	374.28179931640625	2	374.703046	747.391539	-0.33408	-0.00012518	0.062313	2.3349E-05	-0.27177	-0.00010183	374.7029641875736	37.06	0.20119	37.831	37.716	37.917	0.7709					5	3	2	0	0	0	0.79683	1	13521	13521		2.3027	0	1	232330	+		18027	19220	12990	13089	17632	17632					0.0077388611744027
GPAPYRAPR	9	Unmodified	_GPAPYRAPR_					0	0	0			REV__ENST00000565276.5_2_16:904534-905462:-|nuORF	REV__ENST00000565276.5_2_16:904534-905462:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	492.4774475097656	2	492.772326	983.530098	-0.73514	-0.00036225	-2.6326	-0.0012973	-3.3677	-0.0016595	492.77123064029445	35.505	0.35402	36.268	36.081	36.435	0.76338					12	6	2	0	0	0	0.77834	1	12942	12942		2.0598	0	1	1357700	+		18028	26228	12991	13090	17633	17633					0.037674290857466985
GPAQGRVRV	9	Unmodified	_GPAQGRVRV_					0	0	0			REV__ENST00000452293.5_1_2:220043259-220044866:+|nuORF	REV__ENST00000452293.5_1_2:220043259-220044866:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	469.6642150878906	2	470.277775	938.540997	-0.22585	-0.00010621	2.5024	0.0011768	2.2766	0.0010706	470.27843455822864	111.28	0.56384	111.28	110.9	111.46	0					16	10	2	0	0	0	0.8028	1	40659	40659		4.3292	0	1	1998300	+		18029	24900	12992	13091	17634	17634					0.0692683146003219
GPARGALFLR	10	Unmodified	_GPARGALFLR_					0	0	0		ENST00000580114.5_3_16:67197575-67198388:+|nuORF	ENST00000580114.5_3_16:67197575-67198388:+|nuORF	ENST00000580114.5_3_16:67197575-67198388:+|nuORF	MSMS	A375_MHC_IP_R1	1	353.26971435546875	3	353.213692	1056.61925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.896	1	34.896	34.396	35.396	0								0	0	0	0.15038	1	11550	11550		10.899	0	1				18030	13670	12993	13092	17635	17635					0.09320264045254589
GPARLLEG	8	Unmodified	_GPARLLEG_					0	0	0		ERBB4|p.L864P|1|0.33|ENSG00000178568|chr2:211430997-211430997|A/G|missense_variant	ERBB4|p.L864P|1|0.33|ENSG00000178568|chr2:211430997-211430997|A/G|missense_variant	ERBB4|p.L864P|1|0.33|ENSG00000178568|chr2:211430997-211430997|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	812.139892578125	1	812.462478	811.455202	-1.1831	-0.00096122	0.18118	0.0001472	-1.0019	-0.00081401	812.4624833204501	38.652	1.2781	39.427	38.687	39.965	0.77451					26	24	2	0	0	0	0.972	1	14338	14338		0.69038	0	1	3694400			18031	13954	12994	13093	17636	17636					0.041932465545301056
GPARLLEG	8	Unmodified	_GPARLLEG_					0	0	0		ERBB4|p.L864P|1|0.33|ENSG00000178568|chr2:211430997-211430997|A/G|missense_variant	ERBB4|p.L864P|1|0.33|ENSG00000178568|chr2:211430997-211430997|A/G|missense_variant	ERBB4|p.L864P|1|0.33|ENSG00000178568|chr2:211430997-211430997|A/G|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		1	812.462478	811.455202	-0.49844	-0.00040496	0.093489	7.5956E-05	-0.40495	-0.00032901	812.4623732345588	39.452	0.50554	39.452	39.289	39.794	0	0.012735	-5.3017E-05	NaN	0.69038	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3857400			18032	13954	12994	13093							0.041932465545301056
GPASAMHAQL	10	Unmodified	_GPASAMHAQL_					0	0	0			REV__ENST00000539246.5_1_11:61286101-61314074:-|nuORF	REV__ENST00000539246.5_1_11:61286101-61314074:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	491.6898498535156	2	491.742376	981.4702	-0.22241	-0.00010937	-0.13588	-6.6819E-05	-0.35829	-0.00017619	491.7419863870612	42.239	0.60525	42.239	41.982	42.587	0					14	11	2	0	0	0	0.51963	1	14742	14742		26.884	2.2098	1	956020	+		18033	16206	12995	13094	17637	17637					-0.021276296397900296
GPAWRASVRQ	10	Unmodified	_GPAWRASVRQ_					0	0	0			REV__ENST00000440783.2_1_16:46918774-46919059:+|nuORF	REV__ENST00000440783.2_1_16:46918774-46919059:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	376.94000244140625	3	376.540468	1126.59957	0.14422	5.4306E-05	-1.0847	-0.00040844	-0.9405	-0.00035414	376.53992383869763	19.245	0.29937	19.245	19.221	19.521	0					11	7	2	0	0	0	0.91909	1	4684	4684		5.4027	0	1	36771000	+		18034	24800	12996	13095	17638	17638					0.041338880344937934
GPAYQKYLWWK	11	Unmodified	_GPAYQKYLWWK_					0	0	0		ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	MULTI-SECPEP	A375_MHC_IP_R1	1	479.9800109863281	3	480.587195	1438.73976	-0.11701	-5.6233E-05	0.80129	0.00038509	0.68428	0.00032886	480.9216379504113	21.732	0.30354	21.732	21.505	21.808	0					8	5	2	0	0	0	1.0014	1	5695	5695		0.50596	0.34663	1	1944800			18035	6796	12997	13096	17639	17639					0.037936272482056665
GPCCQNCQL	9	Unmodified	_GPCCQNCQL_					0	0	0		nc|ENSG00000143537|Q13444-13|ADAM15;nc|ENSG00000143537|Q13444-10|ADAM15;nc|ENSG00000143537|Q13444-9|ADAM15;nc|ENSG00000143537|Q13444-8|ADAM15;nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-7|ADAM15;nc|ENSG00000143537|Q13444-6|ADAM15;nc|ENSG00000143537|Q13444-12|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF;nc|ENSG00000143537|Q13444-5|ADAM15;nc|ENSG00000143537|Q13444-4|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-3|ADAM15;ENSG00000143537|ENST00000356955|ADAM15;nc|ENSG00000143537|Q13444-11|ADAM15	nc|ENSG00000143537|Q13444-13|ADAM15	nc|ENSG00000143537|Q13444-13|ADAM15	MULTI-MSMS	A375_MHC_IP_R1	1	483.63421630859375	2	483.185523	964.356492	-0.23961	-0.00011577	-0.54326	-0.00026249	-0.78286	-0.00037827	483.18525306837483	44.083	0.40896	44.083	43.909	44.318	0					11	7	2	0	0	0	0.63811	1	15456	15456		12.532	3.1841	1	1436900			18036	5405	12998	13097	17640	17640					-0.12711184068700732
GPCHPMGIYKT	11	Unmodified	_GPCHPMGIYKT_					0	0	0			REV__nc|ENSG00000118557|Q8TBY8-3|PMFBP1	REV__nc|ENSG00000118557|Q8TBY8-3|PMFBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	402.6083679199219	3	401.859821	1202.55763	-0.30568	-0.00012284	4.1433	0.001665	3.8376	0.0015422	402.1955116334956	28.255	0.2532	28.934	28.757	29.01	0.67857					6	4	2	0	0	0	0.99681	1	9677	9677		0.36667	0	1	697560	+		18037	18047	12999	13098	17641	17641					-0.03554171760538338
GPDKDKLLA	9	Unmodified	_GPDKDKLLA_					0	0	0			REV__ENST00000552168.1_1_12:53455573-53455786:+|nuORF	REV__ENST00000552168.1_1_12:53455573-53455786:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	479.17333984375	2	478.7742	955.533846	-0.35984	-0.00017228	-1.3876	-0.00066433	-1.7474	-0.00083661	478.77341276194636	143.69	0.20415	143.71	143.59	143.79	0.024414					6	3	2	0	0	0	0.80005	1	56172	56172		2.0598	0	1	1014500	+		18038	17649	13000	13099	17642	17642					0.0543005406894963
GPDPSCGDAWP	11	Unmodified	_GPDPSCGDAWP_					0	0	0			REV__ENST00000578297.1_1_17:61776276-61776522:-|nuORF	REV__ENST00000578297.1_1_17:61776276-61776522:-|nuORF	MSMS	A375_MHC_IP_R2	2	551.17236328125	2	551.218931	1100.42331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.496	1	81.241	80.741	81.741	0.74474								0	0	0	0.16108	1	30561	30561		13.042	2.2185	1		+		18039	26328	13001	13100	17643	17643					-0.12288533981586625
GPEARGPGL	9	Unmodified	_GPEARGPGL_					0	0	0			REV__ENST00000319836.7_1_10:46089857-46090160:-|nuORF	REV__ENST00000319836.7_1_10:46089857-46090160:-|nuORF	MSMS	A375_MHC_IP_R2	2	427.1869201660156	2	427.229959	852.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.114	1	85.85	85.35	86.35	0.73601								0	0	0	0.15486	1	32357	32357		13.508	1.8676	1		+		18040	23558	13002	13101	17644	17644					0.013240585491416823
GPEDEELW	8	Unmodified	_GPEDEELW_					0	0	0		nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP;ENSG00000114650|ENST00000265565|SCAP	nc|ENSG00000114650|Q12770-4|SCAP	nc|ENSG00000114650|Q12770-4|SCAP	MSMS	A375_MHC_IP_R1	1	487.6709899902344	2	487.708722	973.402892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.174	1	46.174	45.674	46.674	0								0	0	0	0.16876	1	16187	16187		10.183	0.83596	1				18041	3234	13003	13102	17645	17645					-0.0848738136976408
GPEERPARPRA	11	Unmodified	_GPEERPARPRA_					0	0	0			REV__ENST00000544485.1_2_12:121712202-121735049:-|nuORF	REV__ENST00000544485.1_2_12:121712202-121735049:-|nuORF	MSMS	A375_MHC_IP_R2	2	412.64263916015625	3	412.558299	1234.65307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.365	1	27.025	26.525	27.525	0.65992								0	0	0	0.16108	1	8903	8903		7.0371	2.9205	1		+		18042	25987	13004	13103	17646	17646					0.045126407463840223
GPFAFKGT	8	Unmodified	_GPFAFKGT_					0	0	0			REV__ENST00000482893.1_1_9:139650821-139651575:-|nuORF	REV__ENST00000482893.1_1_9:139650821-139651575:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	411.9220275878906	2	412.718696	823.422839	0.074786	3.0866E-05	0.14771	6.0961E-05	0.22249	9.1827E-05	412.71880724736644	53.174	0.35433	53.174	52.946	53.301	0					9	6	2	0	0	0	0.972	1	18991	18991		2.5775	0.27475	1	879560	+		18043	22480	13005	13104	17647	17647					0.004064591515316351
GPFGERGADGP	11	Unmodified	_GPFGERGADGP_					0	0	0			REV__ENSG00000134871|ENST00000360467|COL4A2	REV__ENSG00000134871|ENST00000360467|COL4A2	MULTI-MSMS	A375_MHC_IP_R2	2	530.6456909179688	2	530.246338	1058.47812	-0.79892	-0.00042363	-0.68962	-0.00036567	-1.4885	-0.00078929	530.2460465724379	56.051	0.46036	56.801	56.54	57	0.75014					18	8	3	0	0	0	0.47886	1	21160	21160		32.786	3.7041	1	2396300	+		18044	18808	13006	13105	17648	17648					-0.04877779118669423
GPFGERGADGP	11	Unmodified	_GPFGERGADGP_					0	0	0			REV__ENSG00000134871|ENST00000360467|COL4A2	REV__ENSG00000134871|ENST00000360467|COL4A2	MULTI-SECPEP	A375_MHC_IP_R2	2	529.96240234375	2	530.246338	1058.47812	-0.79892	-0.00042363	-0.68962	-0.00036567	-1.4885	-0.00078929	530.2460465724379	56.051	0.46036	56.801	56.54	57	0.75014					18	8	3	0	0	0	0.98524	1	21193	21193		7.1017	1.8048	1	2396300	+		18045	18808	13006	13105	17649	17649					-0.04877779118669423
GPFMRWPG	8	Unmodified	_GPFMRWPG_					0	0	0			REV__ENST00000262120.9_1_18:9334888-9337208:+|nuORF	REV__ENST00000262120.9_1_18:9334888-9337208:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	474.97442626953125	2	474.231448	946.448342	-0.6353	-0.00030128	-0.29832	-0.00014147	-0.93361	-0.00044275	474.2308445607409	19.471	0.25282	19.471	19.268	19.521	0					5	4	2	0	0	0	0.972	1	4699	4699		2.5775	0	1	940010	+		18046	23197	13007	13106	17650	17650					-0.027023895976981294
GPFPRLADCAH	11	Unmodified	_GPFPRLADCAH_					0	0	0		nc|ENSG00000004777|O14559-11|ARHGAP33;ENSG00000004777|ENST00000007510|ARHGAP33;nc|ENSG00000004777|O14559-12|ARHGAP33	nc|ENSG00000004777|O14559-11|ARHGAP33	nc|ENSG00000004777|O14559-11|ARHGAP33	MSMS	A375_MHC_IP_R1	1	592.2017822265625	2	592.287482	1182.56041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.9	1	116.9	116.4	117.4	0								0	0	0	0.16124	1	42893	42893		12.241	4.0851	1				18047	870	13008	13107	17651	17651					-0.0235658031137973
GPGCAPDPT	9	Unmodified	_GPGCAPDPT_					0	0	0		ENST00000269740.8_1_19:2732581-2732752:-|nuORF	ENST00000269740.8_1_19:2732581-2732752:-|nuORF	ENST00000269740.8_1_19:2732581-2732752:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	813.5807495117188	1	814.33998	813.332703	-0.73274	-0.0005967	-0.055497	-4.5194E-05	-0.78824	-0.0006419	814.341877981913	117.67	0.25375	118.28	118.19	118.44	0.60909					6	4	2	0	0	0	0.75466	1	44537	44537		7.9102	2.6795	1	9112800			18048	10372	13009	13108	17652	17652					-0.08142958239204745
GPGGPQHA	8	Unmodified	_GPGGPQHA_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-SECPEP	A375_MHC_IP_R1	1	720.7407836914062	1	720.342363	719.335087	-0.57778	-0.0004162	-1.2741	-0.00091776	-1.8518	-0.001334	720.3408053051513	73.715	0.50664	73.715	73.437	73.943	0					12	9	2	0	0	0	0.972	1	26912	26912		2.3027	1.6124	1	1755900			18049	3209	13010	13109	17653	17653					-0.03580741719247271
GPGKGERRWAR	11	Unmodified	_GPGKGERRWAR_					0	0	0			REV__ENST00000188376.9_2_12:98987634-98987730:+|nuORF	REV__ENST00000188376.9_2_12:98987634-98987730:+|nuORF	MSMS	A375_MHC_IP_R2	2	423.9785461425781	3	423.902288	1268.68504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.339	1	28.018	27.518	28.518	0.67857								0	0	0	0.15694	1	9330	9330		9.2438	0.95734	1		+		18050	23017	13011	13110	17654	17654					0.06144053220168644
GPGKKCHP	8	Unmodified	_GPGKKCHP_					0	0	0		PEAR1|p.E714K|1|0.46|ENSG00000187800|chr1:156912553-156912553|G/A|missense_variant	PEAR1|p.E714K|1|0.46|ENSG00000187800|chr1:156912553-156912553|G/A|missense_variant	PEAR1|p.E714K|1|0.46|ENSG00000187800|chr1:156912553-156912553|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	823.8251342773438	1	823.424319	822.417042	-0.61582	-0.00050708	1.6188	0.001333	1.003	0.00082587	823.4253536609749	144.04	0.43439	144.06	143.74	144.17	0.024414					10	8	2	0	0	0	0.77839	2	56268	56268;56272		0.79363	0.79363	1	951440			18051	15158	13012	13111	17655;17656	17655					-0.0012696263180487222
GPGKKCHP	8	Unmodified	_GPGKKCHP_					0	0	0		PEAR1|p.E714K|1|0.46|ENSG00000187800|chr1:156912553-156912553|G/A|missense_variant	PEAR1|p.E714K|1|0.46|ENSG00000187800|chr1:156912553-156912553|G/A|missense_variant	PEAR1|p.E714K|1|0.46|ENSG00000187800|chr1:156912553-156912553|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	823.424319	822.417042	-0.7307	-0.00060168	0.94778	0.00078042	0.21707	0.00017874	823.4246481970788	144.01	0.24963	144.01	143.78	144.03	0	-0.027315	-0.0002973	NaN	0.79363	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1037000			18052	15158	13012	13111							-0.0012696263180487222
GPGKKCHP	8	Unmodified	_GPGKKCHP_					0	0	0		PEAR1|p.E714K|1|0.46|ENSG00000187800|chr1:156912553-156912553|G/A|missense_variant	PEAR1|p.E714K|1|0.46|ENSG00000187800|chr1:156912553-156912553|G/A|missense_variant	PEAR1|p.E714K|1|0.46|ENSG00000187800|chr1:156912553-156912553|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	823.424319	822.417042	-0.61582	-0.00050708	1.6188	0.001333	1.003	0.00082587	823.4253536609749	144.04	0.43439	144.06	143.74	144.17	0.024414	0.027315	0.00025522	NaN	0.79363	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	951440			18053	15158	13012	13111							-0.0012696263180487222
GPGPDPDHAW	10	Unmodified	_GPGPDPDHAW_					0	0	0			REV__ENST00000587818.1_1_19:45668074-45681461:-|nuORF	REV__ENST00000587818.1_1_19:45668074-45681461:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	524.6823120117188	2	524.727781	1047.44101	-0.5605	-0.00029411	-0.020742	-1.0884E-05	-0.58124	-0.00030499	524.7276771792216	39.453	0.30415	40.227	40.067	40.371	0.77451					8	5	2	0	0	0	0.60556	1	14521	14521		20.454	5.6154	1	1727500	+		18054	16153	13013	13112	17657	17657					-0.08081450664462864
GPGPWCCCC	9	Unmodified	_GPGPWCCCC_					0	0	0			REV__ENST00000286733.8_1_4:76861990-76862140:-|nuORF	REV__ENST00000286733.8_1_4:76861990-76862140:-|nuORF	MSMS	A375_MHC_IP_R1	1	463.1611022949219	2	463.144812	924.275071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.217	1	52.217	51.717	52.717	0								0	0	0	0.15486	1	18561	18561		2.3027	0.24298	1		+		18055	23341	13014	13113	17658	17658					-0.1900958303231164
GPGQSFFL	8	Unmodified	_GPGQSFFL_					0	0	0		DPYD|p.S606F|1|0.33|ENSG00000188641|chr1:97450147-97450147|G/A|missense_variant	DPYD|p.S606F|1|0.33|ENSG00000188641|chr1:97450147-97450147|G/A|missense_variant	DPYD|p.S606F|1|0.33|ENSG00000188641|chr1:97450147-97450147|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	854.2223510742188	1	852.42503	851.417754	-0.46728	-0.00039832	-0.19642	-0.00016744	-0.66371	-0.00056576	852.4250779102568	114.8	0.71707	115.49	115.12	115.83	0.69					28	13	3	0	0	0	0.75322	1	43166	43166		19.439	19.439	1	7617400			18056	797	13015	13114	17659	17659					-0.013898447110932466
GPGRSRPV	8	Unmodified	_GPGRSRPV_					0	0	0			REV__ENST00000223145.9_1_7:8008535-8008613:+|nuORF	REV__ENST00000223145.9_1_7:8008535-8008613:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	413.64495849609375	2	413.238119	824.461684	0.16966	7.0108E-05	0.21494	8.882E-05	0.38459	0.00015893	413.23811721093017	93.169	3.3473	93.908	92.734	96.081	0.73902					118	65	3	0	0	0	0.77686	2	35604	35604;35638		6.3541	0.59368	1	2259800	+		18057	23056	13016	13115	17660;17661	17660					0.04243184505901354
GPGRSRPV	8	Unmodified	_GPGRSRPV_					0	0	0			REV__ENST00000223145.9_1_7:8008535-8008613:+|nuORF	REV__ENST00000223145.9_1_7:8008535-8008613:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	413.238119	824.461684	0.23113	9.5512E-05	0.013935	5.7583E-06	0.24506	0.00010127	413.2380487149783	94.004	1.8811	94.004	92.871	94.752	0	0.048333	-8.3607E-05	NaN	6.3541	58	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2290800	+		18058	23056	13016	13115							0.04243184505901354
GPGSWDLQTV	10	Unmodified	_GPGSWDLQTV_					0	0	0		ENSG00000136378|ENST00000388820|ADAMTS7	ENSG00000136378|ENST00000388820|ADAMTS7	ENSG00000136378|ENST00000388820|ADAMTS7	MULTI-MSMS	A375_MHC_IP_R1	1	530.6582641601562	2	530.258914	1058.50327	-0.35466	-0.00018806	-0.45228	-0.00023983	-0.80694	-0.00042789	530.2586381780433	109.36	0.56102	109.36	109.07	109.63	0					28	10	3	0	0	0	0.6806	1	40082	40082		14.838	0	1	5777600			18059	4782	13017	13116	17662	17662					-0.023637243161147126
GPGTKSPALL	10	Unmodified	_GPGTKSPALL_					0	0	0		ENST00000591750.1_1_19:11347408-11347555:-|nuORF	ENST00000591750.1_1_19:11347408-11347555:-|nuORF	ENST00000591750.1_1_19:11347408-11347555:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	471.1401672363281	2	470.776742	939.538931	-0.70512	-0.00033195	-0.15279	-7.1929E-05	-0.85791	-0.00040388	470.77657365258796	40.585	0.50864	41.36	41.031	41.54	0.77451					15	9	2	0	0	0	0.57412	1	15043	15043		37.075	3.6297	1	2584300			18060	13804	13018	13117	17663	17663					0.0667435793156983
GPHPGPLSK	9	Unmodified	_GPHPGPLSK_					0	0	0			REV__nc|ENSG00000175170|Q5T319-2|FAM182B	REV__nc|ENSG00000175170|Q5T319-2|FAM182B	MSMS	A375_MHC_IP_R1	1	445.617431640625	2	445.248152	888.481751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.801	1	32.801	32.301	33.301	0								0	0	0	0.15486	1	10633	10633		5.2307	0.90143	1		+		18061	24144	13019	13118	17664	17664					0.033049354458512425
GPIWLDDLNC	10	Unmodified	_GPIWLDDLNC_					0	0	0		nc|ENSG00000177675|Q9NR16-2|CD163L1;ENSG00000177675|ENST00000313599|CD163L1;nc|ENSG00000177675|Q9NR16-4|CD163L1	nc|ENSG00000177675|Q9NR16-2|CD163L1	nc|ENSG00000177675|Q9NR16-2|CD163L1	MULTI-MSMS	A375_MHC_IP_R2	2	573.6676635742188	2	573.268424	1144.5223	-0.18505	-0.00010608	-0.75972	-0.00043552	-0.94477	-0.00054161	573.267694121722	63.432	0.9641	64.172	63.835	64.8	0.74022					42	18	3	0	0	0	0.57505	2	24026	23983;24026		22.736	4.3632	1	4809500			18062	8100	13020	13119	17665;17666	17666					-0.04418511016683624
GPKAAAGF	8	Unmodified	_GPKAAAGF_					0	0	0			REV__ENST00000515035.5_1_5:149748314-149754605:+|nuORF	REV__ENST00000515035.5_1_5:149748314-149754605:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	360.0977783203125	2	359.697764	717.380974	-0.24137	-8.6819E-05	0.24983	8.9864E-05	0.0084648	3.0448E-06	359.6978456990279	39.763	0.55804	40.538	40.169	40.727	0.77451					15	10	2	0	0	0	0.972	1	14734	14734		2.5775	0	1	2952700	+		18063	16581	13021	13120	17667	17667					0.010979034629940543
GPKCIPEHHD	10	Unmodified	_GPKCIPEHHD_					0	0	0			REV__nc|ENSG00000141298|Q76I76|SSH2	REV__nc|ENSG00000141298|Q76I76|SSH2	MULTI-SECPEP	A375_MHC_IP_R2	2	1132.7059326171875	1	1132.5204	1131.51313	0.06097	6.905E-05	2.5599	0.0028992	2.6209	0.0029682	1132.5243712197914	107.31	0.30495	108.06	107.84	108.15	0.75436					7	5	2	0	0	0	0.93799	1	40559	40559		3.5965	0	1	2103400	+		18064	19254	13022	13121	17668	17668					-0.0473685958236274
GPKFKLLAKK	10	Unmodified	_GPKFKLLAKK_					0	0	0			REV__ENST00000566581.5_1_15:34656208-34656274:-|nuORF	REV__ENST00000566581.5_1_15:34656208-34656274:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1130.0318603515625	1	1129.74558	1128.7383	0.34809	0.00039325	1.8413	0.0020802	2.1894	0.0024735	1130.748595617646	116.59	0.3048	116.59	116.45	116.75	0					6	5	2	0	0	0	0.92957	1	42728	42728		3.2813	1.7994	1	4117900	+		18065	21407	13023	13122	17669	17669					0.17908037950110156
GPKFTILCTR	10	Unmodified	_GPKFTILCTR_					0	0	0			REV__ENSG00000153395|ENST00000283415|LPCAT1	REV__ENSG00000153395|ENST00000283415|LPCAT1	MSMS	A375_MHC_IP_R1	1	379.4923400878906	3	379.214593	1134.62195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.025	1	85.025	84.525	85.525	0								0	0	0	0.15479	1	31156	31156		2.8433	0	1		+		18066	19840	13024	13123	17670	17670					0.06002351387928684
GPKHLNMKL	9	Unmodified	_GPKHLNMKL_					0	0	0		ENSG00000113013|ENST00000297185|HSPA9;ENST00000507097.5_1_5:137893182-137909502:-|nuORF;ENST00000508003.1_1_5:137895468-137897466:-|nuORF	ENSG00000113013|ENST00000297185|HSPA9	ENSG00000113013|ENST00000297185|HSPA9	MULTI-SECPEP	A375_MHC_IP_R2	2	1038.190185546875	1	1037.59245	1036.58517	0.18077	0.00018757	0.42306	0.00043897	0.60384	0.00062654	1037.5938575036062	117.23	0.50696	117.89	117.58	118.09	0.65962					11	9	2	0	0	0	0.8028	1	44266	44266		4.3292	0.73274	1	19427000			18067	3122	13025	13124	17671	17671					0.06834099562001938
GPKIIFALAVA	11	Unmodified	_GPKIIFALAVA_					0	0	0			REV__ENSG00000115902|ENST00000234256|SLC1A4	REV__ENSG00000115902|ENST00000234256|SLC1A4	MSMS	A375_MHC_IP_R2	2	550.3493041992188	2	550.347335	1098.68012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.35	1	122.72	122.22	123.22	0.3766								0	0	0	0.16305	1	46876	46876		3.2813	1.6287	1		+		18068	17921	13026	13125	17672	17672					0.1347235630485102
GPKKGAARE	9	Unmodified	_GPKKGAARE_					0	0	0			REV__ENST00000491400.5_1_6:35226936-35248953:+|nuORF	REV__ENST00000491400.5_1_6:35226936-35248953:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	457.6643371582031	2	457.264333	912.514114	-0.13296	-6.0799E-05	0.27225	0.00012449	0.13929	6.3693E-05	457.2643529469833	104.84	4.938	104.84	103.12	108.05	0					218	96	4	0	0	0	0.75978	1	39416	39416		1.6526	0.85899	1	9867800	+		18069	25400	13027	13126	17673	17673					0.054357228488470355
GPKVDVNAPD	10	Unmodified	_GPKVDVNAPD_					0	0	0		AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.P2986Afs*6|1|0.42|ENSG00000124942|chr11:62525462-62525463|-/A|frameshift_variant;AHNAK|p.F4329Lfs*50|1|0.43|ENSG00000124942|chr11:62521430-62521430|G/-|frameshift_variant;AHNAK|p.M4461Afs*2|1|0.03|ENSG00000124942|chr11:62521035-62521036|AT/-|frameshift_variant	AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	505.7111511230469	2	506.258914	1010.50327	-1.247	-0.00063128	1.5158	0.00076739	0.26885	0.00013611	506.25935354694315	53.508	0.66507	54.259	53.944	54.609	0.75105					17	12	2	0	0	0	0.87163	1	20143	20143		2.9952	0	1	879790			18070	87	13028	13127	17674	17674					-0.0015572431610735293
GPLHDPHV	8	Unmodified	_GPLHDPHV_					0	0	0			REV__ENST00000533080.5_1_11:44881945-44940814:+|nuORF	REV__ENST00000533080.5_1_11:44881945-44940814:+|nuORF	MSMS	A375_MHC_IP_R1	1	436.1564025878906	2	436.224677	870.434801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.029	1	95.029	94.529	95.529	0								0	0	0	0.16876	1	34928	34928		15.768	4.6538	1		+		18071	25875	13029	13128	17675	17675					-0.005599241053005244
GPLPHLAKL	9	Unmodified	_GPLPHLAKL_					0	0	0			REV__ENSG00000051341|ENST00000264233|POLQ	REV__ENSG00000051341|ENST00000264233|POLQ	MULTI-MSMS	A375_MHC_IP_R1	1	473.6973876953125	2	473.297645	944.580737	-0.7392	-0.00034986	0.40363	0.00019104	-0.33557	-0.00015882	473.2977942363699	67.101	1.0214	67.101	66.632	67.654	0					44	19	3	0	0	0	0.3054	1	24231	24231		30.225	3.3412	1	9207700	+		18072	16391	13030	13129	17676	17676					0.10622958410738192
GPLPRHPC	8	Unmodified	_GPLPRHPC_					0	0	0		ENST00000463837.5_1_11:64121564-64124957:+|nuORF;nc|ENSG00000168071|A6NC98-5|CCDC88B	ENST00000463837.5_1_11:64121564-64124957:+|nuORF	ENST00000463837.5_1_11:64121564-64124957:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	439.1289978027344	2	438.729072	875.443591	-0.24389	-0.000107	0.0021735	9.5358E-07	-0.24172	-0.00010605	438.72901235676835	27.235	1.0587	27.235	26.878	27.937	0					43	20	3	0	0	0	0.75805	1	8169	8169		18.135	1.1927	1	15041000			18073	12216	13031	13130	17677	17677					0.0008872625952562885
GPLPRHPC	8	Unmodified	_GPLPRHPC_					0	0	0		ENST00000463837.5_1_11:64121564-64124957:+|nuORF;nc|ENSG00000168071|A6NC98-5|CCDC88B	ENST00000463837.5_1_11:64121564-64124957:+|nuORF	ENST00000463837.5_1_11:64121564-64124957:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	439.12884521484375	2	438.729072	875.443591	-0.63846	-0.00028011	0.17328	7.6025E-05	-0.46518	-0.00020409	438.72909604193393	26.582	1.07	27.242	26.857	27.927	0.65992					46	20	3	0	0	0	0.75805	1	8939	8939		18.135	2.3668	1	11581000			18074	12216	13031	13130	17678	17678					0.0008872625952562885
GPLRWLQV	8	Unmodified	_GPLRWLQV_					0	0	0			REV__ENSG00000100154|ENST00000397906|TTC28	REV__ENSG00000100154|ENST00000397906|TTC28	MULTI-SECPEP	A375_MHC_IP_R1	1	485.36395263671875	2	484.787444	967.560336	-0.65806	-0.00031902	1.1174	0.0005417	0.45934	0.00022268	484.7881644647284	41.449	0.4078	41.449	41.266	41.674	0					11	7	2	0	0	0	0.92215	1	14280	14280		10.183	2.2732	1	902240	+		18075	17054	13032	13131	17679	17679					0.07525787750944346
GPLYTLASTH	10	Unmodified	_GPLYTLASTH_					0	0	0			REV__PTPRN2|p.P205L|1|0.13|ENSG00000155093|chr7:158167227-158167227|G/A|missense_variant	REV__PTPRN2|p.P205L|1|0.13|ENSG00000155093|chr7:158167227-158167227|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	353.9504089355469	3	353.85383	1058.53966	-0.26086	-9.2305E-05	-0.40378	-0.00014288	-0.66463	-0.00023518	353.85386504093617	28.078	0.5034	28.078	27.735	28.238	0					12	9	2	0	0	0	0.90853	1	8508	8508		3.5871	0	1	1590000	+		18076	27861	13033	13132	17680	17680					0.012731525806202626
GPMAPSYLV	9	Unmodified	_GPMAPSYLV_					0	0	0			REV__nc|ENSG00000165891|Q96AV8-3|E2F7	REV__nc|ENSG00000165891|Q96AV8-3|E2F7	MULTI-MSMS	A375_MHC_IP_R2	2	468.13885498046875	2	467.738771	933.462989	-0.69548	-0.0003253	-0.15267	-7.1409E-05	-0.84815	-0.00039671	467.73866281030735	80.853	1.0699	81.598	80.961	82.03	0.74474					32	20	2	0	0	0	0.27971	1	30625	30625		32.117	5.2333	1	2955300	+		18077	20633	13034	13133	17681	17681					-0.006403622402217479
GPMAPSYLV	9	Unmodified	_GPMAPSYLV_					0	0	0			REV__nc|ENSG00000165891|Q96AV8-3|E2F7	REV__nc|ENSG00000165891|Q96AV8-3|E2F7	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	467.738771	933.462989	-0.27417	-0.00012824	-0.32421	-0.00015165	-0.59838	-0.00027988	467.7385360633063	81.405	1.1653	81.405	80.948	82.113	0	-0.096104	-9.9088E-05	NaN	32.117	33	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2165900	+		18078	20633	13034	13133							-0.006403622402217479
GPMAPSYLV	9	Unmodified	_GPMAPSYLV_					0	0	0			REV__nc|ENSG00000165891|Q96AV8-3|E2F7	REV__nc|ENSG00000165891|Q96AV8-3|E2F7	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	467.738771	933.462989	-0.69548	-0.0003253	-0.15267	-7.1409E-05	-0.84815	-0.00039671	467.73866281030735	80.853	1.0699	81.598	80.961	82.03	0.74474	0.096104	6.1385E-05	NaN	32.117	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2955300	+		18079	20633	13034	13133							-0.006403622402217479
GPMPSAEEEAY	11	Unmodified	_GPMPSAEEEAY_					0	0	0		ENSG00000100154|ENST00000397906|TTC28	ENSG00000100154|ENST00000397906|TTC28	ENSG00000100154|ENST00000397906|TTC28	MULTI-MSMS	A375_MHC_IP_R1	1	590.7217407226562	2	590.744979	1179.4754	-0.32874	-0.0001942	0.81413	0.00048094	0.48539	0.00028674	590.7451127730781	73.379	0.45741	73.379	73.132	73.589	0					13	8	2	0	0	0	0.73228	1	26731	26731		6.7232	0.51738	1	1655600			18080	2128	13035	13134	17682	17682					-0.10715415358504288
GPNGGGGN	8	Unmodified	_GPNGGGGN_					0	0	0		ENSG00000148835|ENST00000369839|TAF5;nc|ENSG00000148835|Q15542-2|TAF5	ENSG00000148835|ENST00000369839|TAF5	ENSG00000148835|ENST00000369839|TAF5	MULTI-MSMS	A375_MHC_IP_R2	2	630.193115234375	1	629.263779	628.256502	-0.67419	-0.00042424	1.3393	0.00084275	0.66508	0.00041851	629.2682510936278	135.74	3.5239	135.85	134.36	137.89	0.11134					105	68	2	0	0	0	0.7779	1	52938	52938		2.5775	0	1	2463700			18081	5767	13036	13135	17683	17683					-0.07249594024335693
GPNVRVPG	8	Unmodified	_GPNVRVPG_					0	0	0			REV__nc|ENSG00000176973|Q8N5H3-4|FAM89B	REV__nc|ENSG00000176973|Q8N5H3-4|FAM89B	MSMS	A375_MHC_IP_R1	1	398.2500305175781	2	398.22722	794.439886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.734	1	22.734	22.234	23.234	0								0	0	0	0.16876	1	6135	6135		5.7604	0.52976	1		+		18082	27375	13037	13136	17684	17684					0.03444379757343086
GPNVRVPG	8	Unmodified	_GPNVRVPG_					0	0	0			REV__nc|ENSG00000176973|Q8N5H3-4|FAM89B	REV__nc|ENSG00000176973|Q8N5H3-4|FAM89B	MSMS	A375_MHC_IP_R1	1	398.2642517089844	2	398.22722	794.439886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.154	1	23.154	22.654	23.654	0								0	0	0	0.16876	1	6310	6310		10.183	1.5901	1		+		18083	27375	13037	13136	17685	17685					0.03444379757343086
GPPGRKGP	8	Unmodified	_GPPGRKGP_					0	0	0			REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	MSMS	A375_MHC_IP_R2	2	383.27215576171875	2	383.221937	764.429321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.621	1	20.231	19.731	20.731	0.61029								0	0	0	0.16876	1	6043	6043		11.114	0	1		+		18084	22593	13038	13137	17686	17686					0.0376839710289687
GPPGSGPH	8	Unmodified	_GPPGSGPH_					0	0	0		ENST00000479440.1_1_7:44613191-44613521:-|nuORF	ENST00000479440.1_1_7:44613191-44613521:-|nuORF	ENST00000479440.1_1_7:44613191-44613521:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	705.3607177734375	1	705.331464	704.324188	-0.57161	-0.00040317	-0.99491	-0.00070174	-1.5665	-0.0011049	705.3315069522328	118.65	0.15231	118.65	118.58	118.73	0					4	2	2	0	0	0	0.77781	1	43743	43743		2.8892	0	1	9878900			18085	12474	13039	13138	17687	17687					-0.0398014409353209
GPPGTGKTLL	10	Unmodified	_GPPGTGKTLL_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3;ENST00000557444.5_1_16:90055269-90057690:+|nuORF;ENST00000427658.1_1_16:90057264-90060229:+|nuORF;ENST00000481905.5_1_6:149919348-149924475:-|nuORF;ENST00000437774.5_1_16:90055269-90060229:+|nuORF;ENST00000458604.6_1_14:53173986-53184887:+|nuORF;ENST00000418696.5_2_16:90046667-90060229:+|nuORF;ENST00000436447.5_1_16:90046667-90060229:+|nuORF;ENST00000496420.5_1_7:92123531-92130970:-|nuORF;nc|ENSG00000167216|Q8IYT4-2|KATNAL2;ENSG00000167216|ENST00000683218|KATNAL2;nc|ENSG00000100764|P62191-2|PSMC1;ENSG00000100764|ENST00000261303|PSMC1;ENST00000434820.1_1_2:17566863-17567166:+|nuORF;ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1;nc|ENSG00000127980|O43933-2|PEX1;nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;ENSG00000124587|ENST00000304611|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;ENSG00000141385|ENST00000269143|AFG3L2;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000581764.1_1_17:61907522-61908306:+|nuORF;ENSG00000100519|ENST00000445930|PSMC6;nc|ENSG00000186625|O75449-2|KATNA1;ENSG00000186625|ENST00000367411|KATNA1	ENSG00000165916|ENST00000298852|PSMC3;nc|ENSG00000100764|P62191-2|PSMC1;ENST00000484913.5_1_7:92116773-92148321:-|nuORF;nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000124587|ENST00000304611|PEX6;ENSG00000141385|ENST00000269143|AFG3L2;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENSG00000100519|ENST00000445930|PSMC6;nc|ENSG00000186625|O75449-2|KATNA1	nc|ENSG00000100764|P62191-2|PSMC1	MULTI-SECPEP	A375_MHC_IP_R1	1	471.1399841308594	2	470.776742	939.538931	-0.75436	-0.00035513	-0.48325	-0.0002275	-1.2376	-0.00058264	470.77641262976704	41.475	0.50925	41.475	41.164	41.674	0					16	9	2	0	0	0	0.36543	1	14282	14282		42.312	0	1	2375100			18086	7003;2217;4114;4815;3917;5234;1861;2188;8765	13040	13139	17688	17688					0.0667435793156983
GPPPVPKETV	10	Unmodified	_GPPPVPKETV_					0	0	0		ENSG00000115902|ENST00000234256|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	MULTI-MSMS	A375_MHC_IP_R2	2	510.6842346191406	2	510.78985	1019.56515	-0.75231	-0.00038427	-0.55326	-0.0002826	-1.3056	-0.00066687	510.78946339822096	45.691	0.75735	46.456	46.048	46.805	0.76519					33	14	3	0	0	0	0.62155	1	17161	17161		19.257	3.1079	1	13389000			18087	3348	13041	13140	17689	17689					0.05614627103057046
GPPWAAGK	8	Unmodified	_GPPWAAGK_					0	0	0		ENST00000395876.6_1_22:50498414-50498546:-|nuORF	ENST00000395876.6_1_22:50498414-50498546:-|nuORF	ENST00000395876.6_1_22:50498414-50498546:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	392.61126708984375	2	392.211038	782.407523	0.68709	0.00026949	-0.25536	-0.00010015	0.43174	0.00016933	392.2108556589655	44.789	0.60915	44.789	44.523	45.132	0					19	11	2	0	0	0	0.93416	1	15673	15673		14.582	0	1	3077300			18088	11479	13042	13141	17690	17690					0.0076159235433124195
GPPWAAGK	8	Unmodified	_GPPWAAGK_					0	0	0		ENST00000395876.6_1_22:50498414-50498546:-|nuORF	ENST00000395876.6_1_22:50498414-50498546:-|nuORF	ENST00000395876.6_1_22:50498414-50498546:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	392.6108703613281	2	392.211038	782.407523	0.0009934	3.8962E-07	0.1097	4.3027E-05	0.1107	4.3416E-05	392.21098918068253	44.005	0.55543	44.774	44.48	45.035	0.76909					18	10	2	0	0	0	0.88799	1	16400	16400		20.871	0	1	2881600			18089	11479	13042	13141	17691	17691					0.0076159235433124195
GPQLRYIS	8	Unmodified	_GPQLRYIS_					0	0	0			REV__ACSS3|p.G329R|1|0.1|ENSG00000111058|chr12:81151907-81151907|G/A|missense_variant	REV__ACSS3|p.G329R|1|0.1|ENSG00000111058|chr12:81151907-81151907|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	467.150634765625	2	467.261259	932.507966	-0.88667	-0.00041431	0.81803	0.00038223	-0.068645	-3.2075E-05	467.2615107962622	54.373	0.6581	55.124	54.712	55.37	0.75075					17	12	2	0	0	0	0.90224	1	20387	20387		19.439	6.9074	1	1488700	+		18090	15303	13043	13142	17692	17692					0.03901204617318399
GPRRMDEEYQ	10	Unmodified	_GPRRMDEEYQ_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	A375_MHC_IP_R1	1	640.2215576171875	2	640.788044	1279.56153	-0.46108	-0.00029545	-1.3797	-0.00088411	-1.8408	-0.0011796	640.7872387918466	51.483	0.25284	51.483	51.322	51.575	0					6	4	2	0	0	0	0.92227	1	18259	18259		5.2969	0	1	1532200	+		18091	21639	13044	13143	17693	17693					-0.06706410733113444
GPSLTWDIKF	10	Unmodified	_GPSLTWDIKF_					0	0	0			REV__nc|ENSG00000160593|Q86YT9-3|JAML	REV__nc|ENSG00000160593|Q86YT9-3|JAML	MULTI-SECPEP	A375_MHC_IP_R1	1	388.94891357421875	3	388.541363	1162.60226	0.17961	6.9784E-05	-0.030181	-1.1726E-05	0.14943	5.8058E-05	388.54131733161927	46.364	0.55294	46.364	46.043	46.596	0					25	10	3	0	0	0	0.93405	1	16212	16212		5.0475	2.7647	1	6775600	+		18092	20177	13045	13144	17694	17694					0.02746298648821721
GPSRRRAPLP	10	Unmodified	_GPSRRRAPLP_					0	0	0			REV__ENST00000265340.11_1_5:134369665-134369908:-|nuORF	REV__ENST00000265340.11_1_5:134369665-134369908:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	554.2307739257812	2	553.830706	1105.64686	-0.24803	-0.00013737	-0.56217	-0.00031135	-0.8102	-0.00044872	553.8302543421757	126.45	1.618	126.45	126.1	127.72	0					59	31	5	0	0	0	0.71619	1	48197	48197		8.7454	2.0222	1	97311000	+		18093	23250	13046	13145	17695	17695					0.09826167305504896
GPSRRRAPLP	10	Unmodified	_GPSRRRAPLP_					0	0	0			REV__ENST00000265340.11_1_5:134369665-134369908:-|nuORF	REV__ENST00000265340.11_1_5:134369665-134369908:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	553.830706	1105.64686	-0.74398	-0.00041204	-1.1266	-0.00062394	-1.8706	-0.001036	553.8299075488682	125.91	3.0847	126.2	125.47	128.56	0.2951	-0.12256	-0.00011715	NaN	8.7454	224	60	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205780000	+		18094	23250	13046	13145							0.09826167305504896
GPSTLWPLSQ	10	Unmodified	_GPSTLWPLSQ_					0	0	0			REV__ENST00000466284.1_1_1:26152826-26153125:+|nuORF	REV__ENST00000466284.1_1_1:26152826-26153125:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	362.273193359375	3	362.525713	1084.55531	0.12965	4.7002E-05	-1.1664	-0.00042287	-1.0368	-0.00037586	362.5255027028579	35.849	1.4722	35.849	35.573	37.045	0					43	28	2	0	0	0	0.91909	1	11862	11862		3.0723	3.0723	1	789340	+		18095	25034	13047	13146	17696	17696					0.016414390976706272
GPSTLWPLSQ	10	Unmodified	_GPSTLWPLSQ_					0	0	0			REV__ENST00000466284.1_1_1:26152826-26153125:+|nuORF	REV__ENST00000466284.1_1_1:26152826-26153125:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	362.273193359375	3	362.525713	1084.55531	0.26037	9.4391E-05	0.51732	0.00018754	0.77769	0.00028193	363.1947929032671	34.965	0.81516	34.965	34.81	35.625	0					30	15	3	0	0	0	0.91909	1	11862	11862		3.0723	3.0723	1	3000200	+		18096	25034	13047	13146	17697	17697					0.016414390976706272
GPSTLWPLSQ	10	Unmodified	_GPSTLWPLSQ_					0	0	0			REV__ENST00000466284.1_1_1:26152826-26153125:+|nuORF	REV__ENST00000466284.1_1_1:26152826-26153125:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	362.525713	1084.55531	-0.56386	-0.00020441	0.11231	4.0717E-05	-0.45154	-0.0001637	362.86002085603906	34.148	0.60661	34.901	34.348	34.955	0.75225	-0.032067	-0.00025401	NaN	3.0723	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7674600	+		18097	25034	13047	13146							0.016414390976706272
GPTGVPNAQM	10	Unmodified	_GPTGVPNAQM_					0	0	0			REV__ENSG00000237452|ENST00000457052|MEIOSIN	REV__ENSG00000237452|ENST00000457052|MEIOSIN	MSMS	A375_MHC_IP_R1	1	486.16937255859375	2	486.234384	970.454216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.207	1	59.207	58.707	59.707	0								0	0	0	0.14741	1	21291	21291		22.736	2.2827	1		+		18098	22765	13048	13147	17698	17698					-0.032193358767017344
GPTLPRQL	8	Unmodified	_GPTLPRQL_					0	0	0			REV__nc|ENSG00000038382|O75962-2|TRIO	REV__nc|ENSG00000038382|O75962-2|TRIO	MULTI-SECPEP	A375_MHC_IP_R2	2	441.6166687011719	2	441.263802	880.513051	-0.36665	-0.00016179	0.42821	0.00018895	0.061562	2.7165E-05	441.26376495136105	31.179	1.2688	31.897	31.114	32.383	0.71857					32	24	2	0	0	0	0.972	1	10805	10805		4.756	1.1595	1	1400700	+		18099	16328	13049	13148	17699	17699					0.06801508479941276
GPTNLRIEY	9	Unmodified	_GPTNLRIEY_					0	0	0		ENSG00000120833|ENST00000551556|SOCS2	ENSG00000120833|ENST00000551556|SOCS2	ENSG00000120833|ENST00000551556|SOCS2	MULTI-SECPEP	A375_MHC_IP_R1	1	355.2573547363281	3	354.857463	1061.55056	-0.17693	-6.2786E-05	-0.45714	-0.00016222	-0.63407	-0.00022501	354.85727262665256	27.102	0.60535	27.102	26.928	27.533	0					16	11	2	0	0	0	0.75164	1	8207	8207		9.544	3.8121	1	3778100			18100	3691	13050	13149	17700	17700					0.022245549548870258
GPTSRPQTHFF	11	Unmodified	_GPTSRPQTHFF_					0	0	0			REV__ENSG00000112144|ENST00000676107|CILK1	REV__ENSG00000112144|ENST00000676107|CILK1	MSMS	A375_MHC_IP_R1	1	425.62701416015625	3	425.5474	1273.62037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.427	1	27.427	26.927	27.927	0								0	0	0	0.16216	1	8320	8320		7.4771	2.7611	1		+		18101	17710	13051	13150	17701	17701					-0.005495663765032077
GPVRAARETPD	11	Unmodified	_GPVRAARETPD_					0	0	0			REV__ENSG00000163082|ENST00000321276|SGPP2	REV__ENSG00000163082|ENST00000321276|SGPP2	MULTI-SECPEP	A375_MHC_IP_R1	1	390.28436279296875	3	390.207155	1167.59963	-0.16304	-6.3619E-05	-0.79143	-0.00030882	-0.95447	-0.00037244	390.54145099904383	30.394	0.45227	30.394	30.251	30.703	0					11	8	2	0	0	0	0.9889	1	9715	9715		4.1166	0	1	3461400	+		18102	20337	13052	13151	17702	17702					0.02253843243852316
GPVRTKKLK	9	Unmodified	_GPVRTKKLK_					0	0	0		nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;ENST00000572579.1_1_17:7796637-7797935:+|nuORF	nc|ENSG00000170004|Q12873-3|CHD3	nc|ENSG00000170004|Q12873-3|CHD3	MULTI-SECPEP	A375_MHC_IP_R1	1	1026.473876953125	1	1026.67823	1025.67095	0.39969	0.00041036	-3.7394	-0.0038391	-3.3397	-0.0034288	1027.6758128863166	111.8	0.2048	111.8	111.67	111.87	0					5	3	2	0	0	0	0.78348	1	40947	40947		1.8442	0	1	1781800			18103	14761	13053	13152	17703	17703					0.15914007739161207
GPVTNKATKIL	11	Unmodified	_GPVTNKATKIL_					0	0	0		nc|ENSG00000167302|Q96N21-2|TEPSIN;nc|ENSG00000167302|Q96N21|TEPSIN;ENSG00000167302|ENST00000637944|TEPSIN	nc|ENSG00000167302|Q96N21-2|TEPSIN	nc|ENSG00000167302|Q96N21-2|TEPSIN	MSMS	A375_MHC_IP_R1	1	571.3897705078125	2	571.350606	1140.68666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.26	1	116.26	115.76	116.76	0								0	0	0	0.1624	1	42641	42641		11.495	2.1116	1				18104	7175	13054	13153	17704	17704					0.12194249465551366
GPVTRRSP	8	Unmodified	_GPVTRRSP_					0	0	0		ENST00000572574.5_1_16:3108602-3109024:-|nuORF	ENST00000572574.5_1_16:3108602-3109024:-|nuORF	ENST00000572574.5_1_16:3108602-3109024:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	435.2823486328125	2	435.251226	868.487899	-0.12885	-5.6081E-05	0.054031	2.3517E-05	-0.074816	-3.2564E-05	435.2511548815594	99.112	5.1421	99.871	97.877	103.02	0.75977					173	100	3	0	0	0	0.77781	1	37791	37791		2.8892	0	1	4933900			18105	13619	13055	13154	17705	17705					0.04839453677379879
GPVVHRGMPRY	11	Unmodified	_GPVVHRGMPRY_					0	0	0		nc|ENSG00000132635|Q9H1Q7-3|PCED1A;nc|ENSG00000132635|Q9H1Q7-2|PCED1A;ENSG00000132635|ENST00000360652|PCED1A	nc|ENSG00000132635|Q9H1Q7-3|PCED1A	nc|ENSG00000132635|Q9H1Q7-3|PCED1A	MULTI-SECPEP	A375_MHC_IP_R1	1	423.97845458984375	3	423.560875	1267.66079	-0.15224	-6.4483E-05	-2.8177	-0.0011935	-2.9699	-0.0012579	423.8936707063379	28.3	0.50337	28.3	27.937	28.44	0					15	9	3	0	0	0	0.99151	1	8574	8574		7.9454	1.3219	1	2203000			18106	4430	13056	13155	17706	17706					0.037670767422923745
GPVWESDNV	9	Unmodified	_GPVWESDNV_					0	0	0			REV__nc|ENSG836|P61566|ERVK-24_env	REV__nc|ENSG836|P61566|ERVK-24_env	MULTI-MSMS	A375_MHC_IP_R1	1	503.19415283203125	2	501.729989	1001.44543	-0.41065	-0.00020603	1.1629	0.00058348	0.75229	0.00037744	501.7300361077485	58.055	1.4206	58.055	57.518	58.938	0					66	27	4	0	0	0	0.68216	1	20839	20839		8.5933	0	1	9335100	+		18107	27572	13057	13156	17707	17707					-0.055239862415191965
GPWLPLPAPV	10	Unmodified	_GPWLPLPAPV_					0	0	0		ENST00000574857.1_1_17:2267300-2267525:+|nuORF	ENST00000574857.1_1_17:2267300-2267525:+|nuORF	ENST00000574857.1_1_17:2267300-2267525:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	523.6726684570312	2	523.805303	1045.59605	-0.44205	-0.00023155	4.0131	0.0021021	3.571	0.0018705	523.8080272891365	79.077	0.45664	79.821	79.591	80.047	0.74474					12	8	2	0	0	0	0.8716	1	29956	29956		12.532	0.89125	1	1995600			18108	13632	13058	13157	17708	17708					0.07507825207949281
GPWSVKKSVPV	11	Unmodified	_GPWSVKKSVPV_					0	0	0		ENST00000567209.2_1_16:28985574-28985997:-|nuORF	ENST00000567209.2_1_16:28985574-28985997:-|nuORF	ENST00000567209.2_1_16:28985574-28985997:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	395.27142333984375	3	395.232641	1182.67609	-0.34763	-0.00013739	0.30673	0.00012123	-0.040894	-1.6163E-05	395.2326777799454	30.595	0.65707	30.595	30.251	30.908	0					26	12	3	0	0	0	0.72649	1	9647	9647		6.6235	0.84002	1	2884100			18109	13567	13059	13158	17709	17709					0.09206266811133901
GPYHPFPNYI	10	Unmodified	_GPYHPFPNYI_					0	0	0		ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	MULTI-MSMS	A375_MHC_IP_R1	1	603.1929321289062	2	602.792924	1203.57129	-0.2202	-0.00013273	0.25776	0.00015538	0.037562	2.2642E-05	602.7930343959241	79.086	1.3779	79.086	78.657	80.034	0					62	26	3	0	0	0	0.055257	1	29001	29001		74.423	56.288	1	126210000			18110	4145	13060	13159	17710	17710					-0.022348546654257007
GPYHPFPNYI	10	Unmodified	_GPYHPFPNYI_					0	0	0		ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	MULTI-MSMS	A375_MHC_IP_R2	2	603.1924438476562	2	602.792924	1203.57129	-0.43369	-0.00026142	0.44247	0.00026672	0.0087879	5.2973E-06	602.7927845088625	78.256	1.4229	78.998	78.572	79.995	0.74293					86	27	6	0	0	0	0.014384	1	29866	29866		89.427	62.543	1	127130000			18111	4145	13060	13159	17711	17711					-0.022348546654257007
GPYLIHYCC	9	Unmodified	_GPYLIHYCC_					0	0	0			REV__ENST00000589179.5_1_12:53590773-53591061:-|nuORF	REV__ENST00000589179.5_1_12:53590773-53591061:-|nuORF	MSMS	A375_MHC_IP_R1	1	356.67913818359375	3	356.826229	1067.45686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.638	1	17.638	17.138	18.138	0								0	0	0	0.15486	1	4148	4148		0.26902	0.1097	1		+		18112	26419	13061	13160	17712	17712					-0.07417203743398204
GQCRFSREKFE	11	Unmodified	_GQCRFSREKFE_					0	0	0		RILP|p.E247K|1|0.93|ENSG00000167705|chr17:1648432-1648432|C/T|missense_variant	RILP|p.E247K|1|0.93|ENSG00000167705|chr17:1648432-1648432|C/T|missense_variant	RILP|p.E247K|1|0.93|ENSG00000167705|chr17:1648432-1648432|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	462.9562072753906	3	462.890949	1385.65102	-0.78858	-0.00036503	0.1069	4.9485E-05	-0.68168	-0.00031554	462.89097443119414	23.829	0.30676	24.459	24.333	24.64	0.63014					7	5	2	0	0	0	1.0005	1	7758	7758		2.4348	0.18206	1	5163600			18113	29079	13062	13161	17713	17713					-0.02638156053762941
GQDFSTELLIT	11	Unmodified	_GQDFSTELLIT_					0	0	0		ENST00000472469.5_2_3:58870372-59035390:-|nuORF;ENSG00000163689|ENST00000482387|CFAP20DC	ENST00000472469.5_2_3:58870372-59035390:-|nuORF	ENST00000472469.5_2_3:58870372-59035390:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	611.6565551757812	2	612.311343	1222.60813	-0.33701	-0.00020635	0.32807	0.00020088	-0.0089395	-5.4737E-06	612.3112995743438	47.153	0.35715	47.914	47.766	48.123	0.76127					8	6	2	0	0	0	0.85086	1	17643	17643		22.658	0	1	934720			18114	6709	13063	13162	17714	17714					0.005733523698154386
GQEGEIGHFD	10	Unmodified	_GQEGEIGHFD_					0	0	0		nc|ENSG00000119844|Q6ULP2-7|AFTPH;ENST00000498706.5_1_2:64778608-64806757:+|nuORF;nc|ENSG00000119844|Q6ULP2-8|AFTPH;nc|ENSG00000119844|Q6ULP2-6|AFTPH;ENSG00000119844|ENST00000409933|AFTPH;nc|ENSG00000119844|Q6ULP2-9|AFTPH	nc|ENSG00000119844|Q6ULP2-7|AFTPH	nc|ENSG00000119844|Q6ULP2-7|AFTPH	MSMS	A375_MHC_IP_R2	2	544.7069091796875	2	544.735803	1087.45705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.14	1	72.874	72.374	73.374	0.73421								0	0	0	0.15332	1	27376	27376		10.074	0.6908	1				18115	3627	13064	13163	17715	17715					-0.08317789218176586
GQELTRLWDRV	11	Unmodified	_GQELTRLWDRV_					0	0	0		ENSG00000105668|ENST00000222275|UPK1A;nc|ENSG00000105668|O00322-2|UPK1A	ENSG00000105668|ENST00000222275|UPK1A	ENSG00000105668|ENST00000222275|UPK1A	MULTI-SECPEP	A375_MHC_IP_R2	2	458.6662292480469	3	458.249242	1371.7259	-0.56008	-0.00025665	-0.2788	-0.00012776	-0.83888	-0.00038442	458.2491836399797	35.192	0.30296	35.955	35.778	36.081	0.76338					9	5	2	0	0	0	0.99819	1	12792	12792		5.8681	3.4334	1	4151200			18116	2626	13065	13164	17716	17716					0.054903497491068265
GQFGAHEFGV	10	Unmodified	_GQFGAHEFGV_					0	0	0			REV__ENSG00000196431|ENST00000354760|CRYBA4	REV__ENSG00000196431|ENST00000354760|CRYBA4	MSMS	A375_MHC_IP_R1	1	524.684814453125	2	524.745973	1047.47739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.17	1	104.17	103.67	104.67	0								0	0	0	0.15105	1	38252	38252		15.847	2.3393	1		+		18117	22197	13066	13165	17717	17717					-0.04444573767705151
GQFHSFWV	8	Unmodified	_GQFHSFWV_					0	0	0			REV__nc|ENSG00000250423|Q9ULL0|KIAA1210	REV__nc|ENSG00000250423|Q9ULL0|KIAA1210	MULTI-MSMS	A375_MHC_IP_R1	1	504.63946533203125	2	504.240327	1006.4661	-0.56354	-0.00028416	-0.35928	-0.00018117	-0.92282	-0.00046532	504.2396850041401	86.49	1.2131	86.49	85.87	87.083	0					67	23	4	0	0	0	0.72008	1	31702	31702		28.487	1.6032	1	13665000	+		18118	27529	13067	13166	17718	17718					-0.036873510711984636
GQFNGPVTI	9	Unmodified	_GQFNGPVTI_					0	0	0			REV__ENSG00000149136|ENST00000278412|SSRP1	REV__ENSG00000149136|ENST00000278412|SSRP1	MSMS	A375_MHC_IP_R2	2	466.66339111328125	2	466.745442	931.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.969	1	41.743	41.243	42.243	0.77451								0	0	0	0.13141	1	15188	15188		32.305	1.6689	1		+		18119	19663	13068	13167	17719	17719					0.00785211863387758
GQFTLRDMY	9	Unmodified	_GQFTLRDMY_					0	0	0		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54;ENST00000556445.1_1_14:35487839-35488318:+|nuORF;ENST00000553923.1_1_14:35483969-35488318:+|nuORF	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-MSMS	A375_MHC_IP_R1	1	566.1974487304688	2	565.768591	1129.52263	-0.39092	-0.00022117	2.3203	0.0013127	1.9293	0.0010916	566.272997739702	73.404	1.0127	73.404	72.88	73.893	0					27	19	2	0	0	0	0.11715	1	26791	26791		47.594	22.195	1	1261400			18120	2227	13069	13168	17720	17720					-0.03695091296845021
GQGPERLV	8	Unmodified	_GQGPERLV_					0	0	0		ENSG00000073536|ENST00000442241|NLE1;nc|ENSG00000073536|Q9NVX2-2|NLE1	ENSG00000073536|ENST00000442241|NLE1	ENSG00000073536|ENST00000442241|NLE1	MULTI-MSMS	A375_MHC_IP_R1	1	428.6376037597656	2	428.237784	854.461016	-0.45571	-0.00019515	0.17093	7.3199E-05	-0.28478	-0.00012195	428.23779890001725	30.581	0.70748	30.581	30.301	31.009	0					33	13	4	0	0	0	0.052283	1	9696	9696		103.75	32.615	1	23699000			18121	1563	13070	13169	17721	17721					0.027963450661900424
GQGPERLV	8	Unmodified	_GQGPERLV_					0	0	0		ENSG00000073536|ENST00000442241|NLE1;nc|ENSG00000073536|Q9NVX2-2|NLE1	ENSG00000073536|ENST00000442241|NLE1	ENSG00000073536|ENST00000442241|NLE1	MULTI-MSMS	A375_MHC_IP_R2	2	428.63751220703125	2	428.237784	854.461016	-0.59791	-0.00025605	0.10704	4.5838E-05	-0.49087	-0.00021021	428.23779249076586	29.863	0.80836	30.562	30.236	31.044	0.69872					33	15	4	0	0	0	0.022188	1	10420	10420		115.69	34.079	1	32809000			18122	1563	13070	13169	17722	17722					0.027963450661900424
GQIEVVPEV	9	Unmodified	_GQIEVVPEV_					0	0	0		PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant;nc|ENSG00000118482|Q92576-2|PHF3;ENSG00000118482|ENST00000262043|PHF3	PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant	PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	485.7074890136719	2	485.266207	968.517862	-0.44374	-0.00021533	-0.090536	-4.3934E-05	-0.53427	-0.00025927	485.26612726204894	86.552	1.98	86.552	86.072	88.052	0					120	38	5	0	0	0	0.0017027	6	31823	31643;31823;31859;31888;32051;32096		147.06	54.568	1	229260000			18123	3542	13071	13170	17723;17724;17725;17726;17727;17728	17724					0.032343478320512986
GQIEVVPEV	9	Unmodified	_GQIEVVPEV_					0	0	0		PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant;nc|ENSG00000118482|Q92576-2|PHF3;ENSG00000118482|ENST00000262043|PHF3	PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant	PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	970.4267578125	1	969.525138	968.517862	-0.068534	-6.6446E-05	-0.090577	-8.7817E-05	-0.15911	-0.00015426	969.5250036489522	86.599	1.7769	86.599	86.121	87.898	0					94	34	5	0	0	0	0.0099737	2	31811	31767;31811		96.367	40.19	1	291710000			18124	3542	13071	13170	17729;17730	17730					0.032343478320512986
GQIEVVPEV	9	Unmodified	_GQIEVVPEV_					0	0	0		PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant;nc|ENSG00000118482|Q92576-2|PHF3;ENSG00000118482|ENST00000262043|PHF3	PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant	PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	485.7076721191406	2	485.266207	968.517862	-0.42561	-0.00020654	-0.12125	-5.8837E-05	-0.54686	-0.00026537	485.2661119105203	85.784	1.5806	86.52	86.034	87.615	0.73601					106	30	5	0	0	0	0.004184	5	32649	32521;32649;32738;32779;33037		160.52	67.863	1	231250000			18125	3542	13071	13170	17731;17732;17733;17734;17735	17732					0.032343478320512986
GQIEVVPEV	9	Unmodified	_GQIEVVPEV_					0	0	0		PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant;nc|ENSG00000118482|Q92576-2|PHF3;ENSG00000118482|ENST00000262043|PHF3	PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant	PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		1	969.525138	968.517862	0.11326	0.00010981	-0.32512	-0.00031521	-0.21186	-0.0002054	969.5247790731751	85.781	1.5806	86.517	86.085	87.665	0.73601	-0.041162	-0.0001791	NaN	96.367	91	30	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	272610000			18126	3542	13071	13170							0.032343478320512986
GQIHRRRRRRT	11	Unmodified	_GQIHRRRRRRT_					0	0	0			REV__nc|ENSG00000171862|P60484-2|PTEN	REV__nc|ENSG00000171862|P60484-2|PTEN	MSMS	A375_MHC_IP_R1	1	746.5167846679688	2	746.45124	1490.88793	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.943	1	22.943	22.443	23.443	0								0	0	0	0.1636	1	6216	6216		0	0	1		+		18127	27360	13072	13171	17736	17736					0.1621179606527221
GQIQTDEDSQL	11	Unmodified	_GQIQTDEDSQL_					0	0	0			REV__ENST00000460687.5_1_1:205317689-205325703:-|nuORF	REV__ENST00000460687.5_1_1:205317689-205325703:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	617.1660766601562	2	617.283314	1232.55207	-0.23605	-0.00014571	1.5043	0.00092857	1.2682	0.00078285	617.2842810841361	62.737	0.4093	62.737	62.557	62.966	0					11	7	2	0	0	0	0.99018	1	22737	22737		11.495	4.393	1	1132200	+		18128	24966	13073	13172	17737	17737					-0.05489900537668291
GQISEVVVV	9	Unmodified	_GQISEVVVV_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	MULTI-MSMS	A375_MHC_IP_R1	1	465.6686096191406	2	465.26875	928.522947	-0.31539	-0.00014674	0.055592	2.5865E-05	-0.25979	-0.00012087	465.26860884277835	83.712	0.65922	83.712	83.432	84.091	0					21	12	3	0	0	0	0.06083	1	30623	30623		60.074	0	1	2624600			18129	2079	13074	13173	17738	17738					0.05582651694669494
GQISEVVVV	9	Unmodified	_GQISEVVVV_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	MULTI-MSMS	A375_MHC_IP_R1	1	929.5474243164062	1	929.530224	928.522947	-0.12862	-0.00011956	-0.082409	-7.6602E-05	-0.21103	-0.00019616	929.5300316638873	83.699	0.7106	83.699	83.38	84.091	0					28	13	3	0	0	0	0.018261	1	30652	30652		85.642	3.7513	1	15865000			18130	2079	13074	13173	17739	17739					0.05582651694669494
GQISEVVVV	9	Unmodified	_GQISEVVVV_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	MULTI-MSMS	A375_MHC_IP_R2	2	465.6684265136719	2	465.26875	928.522947	-0.63793	-0.00029681	0.021432	9.9716E-06	-0.6165	-0.00028684	465.26869304832536	82.851	0.65443	83.592	83.346	84	0.74157					22	12	3	0	0	0	0.030038	1	31473	31473		74.929	0	1	3638300			18131	2079	13074	13173	17740	17740					0.05582651694669494
GQISEVVVV	9	Unmodified	_GQISEVVVV_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	MULTI-MSMS	A375_MHC_IP_R2	2	929.9306640625	1	929.530224	928.522947	-0.27158	-0.00025244	-0.52646	-0.00048936	-0.79804	-0.0007418	929.5295833552802	82.88	0.70442	83.62	83.294	83.998	0.73962					29	13	3	0	0	0	0.094655	1	31633	31633		51.63	11.68	1	14835000			18132	2079	13074	13173	17741	17741					0.05582651694669494
GQLDFSEFL	9	Unmodified	_GQLDFSEFL_					0	0	0		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	A375_MHC_IP_R2	2	528.1741943359375	2	528.25584	1054.49713	-0.53611	-0.0002832	-0.0095502	-5.045E-06	-0.54566	-0.00028825	528.7574325616891	130.36	0.20261	130.58	130.45	130.65	0.2142					5	3	2	0	0	0	0.11629	1	51241	51241		47.749	7.7914	1	5046500			18133	6637	13075	13174	17742	17742					-0.027942425476112476
GQLKRRKILIR	11	Unmodified	_GQLKRRKILIR_					0	0	0			REV__ENST00000557963.1_1_15:101421085-101421394:+|nuORF	REV__ENST00000557963.1_1_15:101421085-101421394:+|nuORF	MSMS	A375_MHC_IP_R1	1	690.9652099609375	2	690.967337	1379.92012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.343	1	69.343	68.843	69.843	0								0	0	0	0.16334	1	25161	25161		1.3295	0.9789	1		+		18134	26132	13076	13175	17743	17743					0.24535770695729298
GQLKWISAEK	10	Unmodified	_GQLKWISAEK_					0	0	0			REV__ENSG00000167889|ENST00000569840|MGAT5B	REV__ENSG00000167889|ENST00000569840|MGAT5B	MULTI-MSMS	A375_MHC_IP_R1	1	580.9876098632812	2	580.327131	1158.63971	-0.033566	-1.9479E-05	-0.65985	-0.00038293	-0.69342	-0.00040241	580.3270162410834	78.53	0.45541	78.53	78.352	78.807	0					10	8	2	0	0	0	0.70793	1	28638	28638		8.7454	0.83525	1	1978100	+		18135	20802	13077	13176	17744	17744					0.0667338991440829
GQLMPRYE	8	Unmodified	_GQLMPRYE_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-SECPEP	A375_MHC_IP_R1	1	496.6568908691406	2	497.244752	992.474951	-0.56813	-0.0002825	0.75331	0.00037458	0.18518	9.2079E-05	497.2451365969466	86.566	0.76051	86.566	86.172	86.933	0					35	14	3	0	0	0	0.77651	1	31684	31684		42.095	9.7891	1	4893100			18136	6889	13078	13177	17745	17745					-0.02158745497035852
GQLMPRYE	8	Unmodified	_GQLMPRYE_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-SECPEP	A375_MHC_IP_R2	2	496.656982421875	2	497.244752	992.474951	-0.31906	-0.00015865	0.75714	0.00037648	0.43808	0.00021783	497.24520563627493	85.864	0.86427	86.598	86.135	86.999	0.73421					35	16	3	0	0	0	0.77651	1	32559	32559		34.102	8.7031	1	5580600			18137	6889	13078	13177	17746	17746					-0.02158745497035852
GQLSDLVVV	9	Unmodified	_GQLSDLVVV_					0	0	0		ENST00000511288.1_1_17:48545715-48548505:+|nuORF;ENST00000506085.5_1_17:48545715-48551043:+|nuORF	ENST00000511288.1_1_17:48545715-48548505:+|nuORF	ENST00000511288.1_1_17:48545715-48548505:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	930.6414794921875	1	929.530224	928.522947	-0.27158	-0.00025244	-0.52646	-0.00048936	-0.79804	-0.0007418	929.5295833552802	82.88	0.70442	83.62	83.294	83.998	0.73962					29	13	3	0	0	0	0.037683	1	31423	31423		69.105	0	1	14835000			18138	12850	13079	13178	17747	17747					0.05582651694658125
GQNMFCITI	9	Unmodified	_GQNMFCITI_					0	0	0			REV__ENST00000346085.9_2_6:157530078-157530135:+|nuORF	REV__ENST00000346085.9_2_6:157530078-157530135:+|nuORF	MSMS	A375_MHC_IP_R2	2	513.7081298828125	2	513.740988	1025.46742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.735	1	80.48	79.98	80.98	0.74474								0	0	0	0.15486	1	30264	30264		12.532	2.3482	1		+		18139	23773	13080	13179	17748	17748					-0.04429221088980739
GQRRSWLIIQR	11	Unmodified	_GQRRSWLIIQR_					0	0	0		nc|ENSG00000002726|P19801-2|AOC1;ENSG00000002726|ENST00000360937|AOC1	nc|ENSG00000002726|P19801-2|AOC1	nc|ENSG00000002726|P19801-2|AOC1	MULTI-SECPEP	A375_MHC_IP_R1	1	706.797607421875	2	706.915301	1411.81605	-0.85727	-0.00060602	-1.2461	-0.00088086	-2.1033	-0.0014869	706.9140546627306	133.5	0.45877	133.5	133.3	133.76	0					11	8	2	0	0	0	1.0001	1	51564	51564		2.4985	2.1479	1	2934000			18140	14446	13081	13180	17749	17749					0.12661443868205424
GQRRSWLIIQR	11	Unmodified	_GQRRSWLIIQR_					0	0	0		nc|ENSG00000002726|P19801-2|AOC1;ENSG00000002726|ENST00000360937|AOC1	nc|ENSG00000002726|P19801-2|AOC1	nc|ENSG00000002726|P19801-2|AOC1	MULTI-MATCH	A375_MHC_IP_R2	2		2	706.915301	1411.81605	-0.65552	-0.00046339	-1.0924	-0.00077223	-1.7479	-0.0012356	706.9143449876082	133.31	0.35333	133.48	133.35	133.7	0.16487	-0.012623	7.2908E-05	NaN	2.4985	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1832200			18141	14446	13081	13180							0.12661443868205424
GQTDDPGPLD	10	Unmodified	_GQTDDPGPLD_					0	0	0		ENSG00000103043|ENST00000261776|VAC14;ENST00000561879.1_1_16:70765195-70778970:-|nuORF;ENST00000564685.5_1_16:70731013-70778503:-|nuORF	ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	MULTI-MSMS	A375_MHC_IP_R2	2	508.1820068359375	2	507.722361	1013.43017	-1.0054	-0.00051049	0.35758	0.00018155	-0.64786	-0.00032893	507.72249574910205	38.127	0.46227	38.901	38.636	39.098	0.77451					18	8	3	0	0	0	0.6502	1	13954	13954		17.113	4.8722	1	3474000			18142	2413	13082	13181	17750	17750					-0.07600897829388487
GQTGVIRSV	9	Unmodified	_GQTGVIRSV_					0	0	0		SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	459.16375732421875	2	458.764166	915.513779	-1.1692	-0.00053638	0.49046	0.00022501	-0.67872	-0.00031137	458.76417597808586	29.034	0.34642	29.732	29.534	29.88	0.69872					10	6	2	0	0	0	0.39273	1	10100	10100		30.703	8.9568	1	9972000			18143	9018	13083	13182	17751	17751					0.052643031289903774
GQTTAKRHPSQ	11	Unmodified	_GQTTAKRHPSQ_					0	0	0		ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	MULTI-SECPEP	A375_MHC_IP_R1	1	606.17236328125	2	605.817993	1209.62143	-0.49862	-0.00030207	2.3034	0.0013954	1.8047	0.0010933	606.3192823095656	80.588	0.50599	80.588	80.238	80.744	0					14	9	2	0	0	0	0.85086	1	29458	29458		17.443	5.202	1	1196800			18144	1644	13084	13183	17752	17752					0.025006479924286396
GQVEIVTKV	9	Unmodified	_GQVEIVTKV_					0	0	0		PRUNE2|p.I2429Mfs*8|1|0.09|ENSG00000106772|chr9:76704987-76704988|-/C|frameshift_variant;nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	PRUNE2|p.I2429Mfs*8|1|0.09|ENSG00000106772|chr9:76704987-76704988|-/C|frameshift_variant	PRUNE2|p.I2429Mfs*8|1|0.09|ENSG00000106772|chr9:76704987-76704988|-/C|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	971.8484497070312	1	972.572423	971.565146	-0.081953	-7.9705E-05	-0.073925	-7.1897E-05	-0.15588	-0.0001516	972.5721142863446	86.3	0.45573	86.3	86.072	86.527	0					14	8	2	0	0	0	0.35487	1	31729	31729		29.082	10.935	1	3842900			18145	2711	13085	13184	17753	17753					0.07822627103041668
GQVEIVTKV	9	Unmodified	_GQVEIVTKV_					0	0	0		PRUNE2|p.I2429Mfs*8|1|0.09|ENSG00000106772|chr9:76704987-76704988|-/C|frameshift_variant;nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	PRUNE2|p.I2429Mfs*8|1|0.09|ENSG00000106772|chr9:76704987-76704988|-/C|frameshift_variant	PRUNE2|p.I2429Mfs*8|1|0.09|ENSG00000106772|chr9:76704987-76704988|-/C|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		1	972.572423	971.565146	0.11971	0.00011643	0.8475	0.00082426	0.96722	0.00094069	972.5721644539184	85.51	0.45749	86.246	86.034	86.492	0.73602	-0.026853	0.00079123	NaN	29.082	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2796500			18146	2711	13085	13184							0.07822627103041668
GQVERFETV	9	Unmodified	_GQVERFETV_					0	0	0		nc|ENSG00000134352|P40189-3|IL6ST;ENSG00000134352|ENST00000381298|IL6ST;ENST00000503773.6_1_5:55236912-55256289:-|nuORF	nc|ENSG00000134352|P40189-3|IL6ST	nc|ENSG00000134352|P40189-3|IL6ST	MULTI-SECPEP	A375_MHC_IP_R2	2	533.1715087890625	2	532.772188	1063.52982	-0.91268	-0.00048625	-0.14924	-7.9511E-05	-1.0619	-0.00056576	532.7722090458559	39.08	0.40903	39.855	39.658	40.067	0.77451					14	7	3	0	0	0	0.062502	1	14403	14403		83.429	50.643	1	2955600			18147	4569	13086	13185	17754	17754					0.0005996457521177945
GQVLERGPV	9	Unmodified	_GQVLERGPV_					0	0	0		nc|ENSG00000076706|P43121-2|MCAM;ENST00000528533.5_1_11:119181936-119187838:-|nuORF;ENSG00000076706|ENST00000264036|MCAM	nc|ENSG00000076706|P43121-2|MCAM	nc|ENSG00000076706|P43121-2|MCAM	MULTI-SECPEP	A375_MHC_IP_R1	1	478.1720886230469	2	477.771991	953.529429	-0.26862	-0.00012834	-0.71028	-0.00033935	-0.9789	-0.00046769	477.7718874787832	49.851	0.81547	49.851	49.439	50.254	0					44	15	4	0	0	0	0.46045	1	17562	17562		36.127	1.7253	1	8053800			18148	1639	13087	13186	17755	17755					0.0508058964603606
GQVNKEFY	8	Unmodified	_GQVNKEFY_					0	0	0			REV__nc|ENSG00000198964|Q86VZ5-2|SGMS1	REV__nc|ENSG00000198964|Q86VZ5-2|SGMS1	MULTI-MSMS	A375_MHC_IP_R2	2	493.65875244140625	2	492.742899	983.471246	-0.75597	-0.0003725	0.38023	0.00018735	-0.37574	-0.00018514	492.7430360854079	49.768	2.7878	50.522	49.738	52.526	0.75406					127	54	3	0	0	0	0.75805	1	19127	19127		18.135	0	1	35137000	+		18149	22460	13088	13187	17756	17756					-0.02115091999246488
GQVPPGESV	9	Unmodified	_GQVPPGESV_					0	0	0		nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF;ENST00000477970.1_1_1:44078891-44086093:+|nuORF	nc|ENSG00000142949|P10586-2|PTPRF;ENST00000477970.1_1_1:44078891-44086093:+|nuORF	nc|ENSG00000142949|P10586-2|PTPRF	MSMS	A375_MHC_IP_R2	2	435.2824401855469	2	435.2218	868.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.017	1	90.749	90.249	91.249	0.7318								0	0	0	0.15283	1	34251	34251		16.942	4.4107	1				18150	5339;12451	13089	13188	17757	17757					-0.010430674076133073
GQWLTNTI	8	Unmodified	_GQWLTNTI_					0	0	0		ENSG00000088038|ENST00000221232|CNOT3	ENSG00000088038|ENST00000221232|CNOT3	ENSG00000088038|ENST00000221232|CNOT3	MULTI-MSMS	A375_MHC_IP_R1	1	466.66351318359375	2	466.745442	931.476331	-0.51497	-0.00024036	0.10996	5.1323E-05	-0.40501	-0.00018904	466.74551988094504	41.7	0.46161	41.7	41.47	41.932	0					14	8	2	0	0	0	0.72008	1	14462	14462		28.487	1.6032	1	2466700			18151	1883	13090	13189	17758	17758					0.00785211863387758
GQWLTNTI	8	Unmodified	_GQWLTNTI_					0	0	0		ENSG00000088038|ENST00000221232|CNOT3	ENSG00000088038|ENST00000221232|CNOT3	ENSG00000088038|ENST00000221232|CNOT3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	466.745442	931.476331	-0.51497	-0.00024036	0.10996	5.1323E-05	-0.40501	-0.00018904	466.74551988094504	41.7	0.46161	41.7	41.47	41.932	0	0	0	NaN	28.487	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2466700			18152	1883	13090	13189							0.00785211863387758
GRAFLFNKV	9	Unmodified	_GRAFLFNKV_					0	0	0		ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	MULTI-MSMS	A375_MHC_IP_R1	1	351.940673828125	3	351.206426	1050.59745	-0.18787	-6.5981E-05	-0.20069	-7.0484E-05	-0.38856	-0.00013647	351.5407235238125	52.516	0.45675	52.516	52.237	52.694	0					15	8	2	0	0	0	0.44183	1	18695	18695		22.658	8.752	1	3501300			18153	3624	13091	13190	17759	17759					0.07417459296698325
GRAFLFNKV	9	Unmodified	_GRAFLFNKV_					0	0	0		ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	MULTI-MSMS	A375_MHC_IP_R2	2	351.9406433105469	3	351.206426	1050.59745	-0.44923	-0.00015777	-0.11269	-3.9578E-05	-0.56192	-0.00019735	351.2063171222476	51.535	0.50631	52.287	52.017	52.524	0.75225					22	9	4	0	0	0	0.26169	1	19393	19393		33.445	24.062	1	4095000			18154	3624	13091	13190	17760	17760					0.07417459296698325
GRAPQVLVL	9	Unmodified	_GRAPQVLVL_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-SECPEP	A375_MHC_IP_R1	1	477.2005310058594	2	476.800552	951.58655	-0.6867	-0.00032742	0.45604	0.00021744	-0.23065	-0.00010998	476.8007290161438	68.489	1.2185	68.489	68.108	69.326	0					54	23	4	0	0	0	0.16229	1	24794	24794		32.305	3.8186	1	42672000			18155	6987	13092	13191	17761	17761					0.10882056922412175
GRAPQVLVL	9	Unmodified	_GRAPQVLVL_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-SECPEP	A375_MHC_IP_R2	2	477.2001953125	2	476.800552	951.58655	-0.52928	-0.00025236	-0.19238	-9.1729E-05	-0.72166	-0.00034409	476.8004252932974	67.442	0.96478	68.179	67.75	68.715	0.73631					48	18	4	0	0	0	0.10969	1	25512	25512		57.471	0	1	48816000			18156	6987	13092	13191	17762	17762					0.10882056922412175
GRDGPPGMPGP	11	Unmodified	_GRDGPPGMPGP_					0	0	0			REV__ENSG00000111799|ENST00000322507|COL12A1	REV__ENSG00000111799|ENST00000322507|COL12A1	MSMS	A375_MHC_IP_R2	2	519.204345703125	2	519.245283	1036.47601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.35	1	143.38	142.88	143.88	0.024414								0	0	0	0.16302	1	56025	56025		2.9952	0.10602	1		+		18157	17695	13093	13192	17763	17763					-0.040765311280893
GRDKYGPPVR	10	Unmodified	_GRDKYGPPVR_					0	0	0		nc|ENSG00000124193|Q13247-3|SRSF6;ENSG00000124193|ENST00000244020|SRSF6	nc|ENSG00000124193|Q13247-3|SRSF6	nc|ENSG00000124193|Q13247-3|SRSF6	MULTI-MSMS	A375_MHC_IP_R2	2	382.6125793457031	3	382.21224	1143.61489	-0.55165	-0.00021085	0.51356	0.00019629	-0.038093	-1.456E-05	382.2123811615135	29.85	0.80848	30.548	30.134	30.942	0.69872					32	15	3	0	0	0	0.65106	1	10395	10395		17.049	2.8778	1	8150000			18158	3879	13094	13193	17764	17764					0.048827548317149194
GRETCLPL	8	Unmodified	_GRETCLPL_					0	0	0		ENSG00000143107|ENST00000370017|FNDC7	ENSG00000143107|ENST00000370017|FNDC7	ENSG00000143107|ENST00000370017|FNDC7	MSMS	A375_MHC_IP_R1	1	444.65069580078125	2	444.73402	887.453487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.471	1	39.471	38.971	39.971	0								0	0	0	0.16876	1	13495	13495		10.183	0.83596	1				18159	5345	13095	13194	17765	17765					0.005258694742451553
GRFRRVFE	8	Unmodified	_GRFRRVFE_					0	0	0			REV__ENST00000565341.5_1_16:784683-784869:-|nuORF	REV__ENST00000565341.5_1_16:784683-784869:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	355.59759521484375	3	356.201675	1065.5832	-0.42839	-0.00015259	-1.2975	-0.00046218	-1.7259	-0.00061477	356.20119674128125	35.57	0.60898	36.333	36.081	36.69	0.76338					14	11	2	0	0	0	0.972	1	12960	12960		10.824	1.4408	1	2164800	+		18160	17261	13096	13195	17766	17766					0.05302806868417065
GRFRRVFE	8	Unmodified	_GRFRRVFE_					0	0	0			REV__ENST00000565341.5_1_16:784683-784869:-|nuORF	REV__ENST00000565341.5_1_16:784683-784869:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	356.201675	1065.5832	-0.27195	-9.687E-05	-1.2773	-0.00045496	-1.5492	-0.00055183	356.2012003829415	36.572	0.50624	36.572	36.389	36.895	0	0.11923	6.3196E-06	NaN	10.824	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1667800	+		18161	17261	13096	13195							0.05302806868417065
GRFSHRIYV	9	Unmodified	_GRFSHRIYV_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENST00000525431.1_1_11:125476222-125478225:+|nuORF	ENSG00000134910|ENST00000392708|STT3A	ENSG00000134910|ENST00000392708|STT3A	MULTI-MSMS	A375_MHC_IP_R1	1	379.27728271484375	3	378.87708	1133.60941	0.40689	0.00015416	-0.30701	-0.00011632	0.099884	3.7844E-05	378.87696525573875	28.649	0.65863	28.649	28.491	29.149	0					19	12	2	0	0	0	0.094655	1	8855	8855		40.725	21.468	1	31645000			18162	4626	13097	13196	17767	17767					0.04795076039886226
GRGEQLRW	8	Unmodified	_GRGEQLRW_					0	0	0			REV__nc|ENSG00000172432|Q9BX10-3|GTPBP2	REV__nc|ENSG00000172432|Q9BX10-3|GTPBP2	MSMS	A375_MHC_IP_R1	1	501.1767883300781	2	501.267407	1000.52026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.497	1	75.497	74.997	75.997	0								0	0	0	0.16876	1	27505	27505		12.532	0	1		+		18163	21143	13098	13197	17768	17768					0.02002241080379008
GRGKGPLP	8	Unmodified	_GRGKGPLP_					0	0	0		ENST00000393640.8_1_16:70432458-70432647:-|nuORF	ENST00000393640.8_1_16:70432458-70432647:-|nuORF	ENST00000393640.8_1_16:70432458-70432647:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	391.1332092285156	2	391.237587	780.460622	0.039568	1.5481E-05	0.87161	0.00034101	0.91118	0.00035649	391.23491189672336	113.41	0.35944	114.12	113.92	114.28	0.70985					14	6	3	0	0	0	0.972	1	42756	42756		0	0	1	2546600			18164	11440	13099	13198	17769	17769					0.06160970136988908
GRGRRRRQWGL	11	Unmodified	_GRGRRRRQWGL_					0	0	0			REV__ENST00000369756.3_2_6:82461889-82462327:-|nuORF	REV__ENST00000369756.3_2_6:82461889-82462327:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	699.8072509765625	2	699.408509	1396.80247	-0.96572	-0.00067543	0.25677	0.00017959	-0.70895	-0.00049585	699.408543752712	141.9	1.2268	141.9	140.96	142.18	0					52	23	3	0	0	0	0.73897	2	54289	54289;54448		0.35063	0.35063	1	1246600	+		18165	24015	13100	13199	17770;17771	17770					0.11993630879624106
GRGRRRRQWGL	11	Unmodified	_GRGRRRRQWGL_					0	0	0			REV__ENST00000369756.3_2_6:82461889-82462327:-|nuORF	REV__ENST00000369756.3_2_6:82461889-82462327:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	467.0079650878906	3	466.608098	1396.80247	-0.46903	-0.00021885	-0.068337	-3.1887E-05	-0.53737	-0.00025074	466.60803416141994	136.41	1.5877	136.52	136.2	137.79	0.11134					73	30	3	0	0	0	0.73897	1	53541	53541		0.094841	0.094841	1	2494000	+		18166	24015	13100	13199	17772	17772					0.11993630879624106
GRGRRRRQWGL	11	Unmodified	_GRGRRRRQWGL_					0	0	0			REV__ENST00000369756.3_2_6:82461889-82462327:-|nuORF	REV__ENST00000369756.3_2_6:82461889-82462327:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	699.8087768554688	2	699.408509	1396.80247	-0.64149	-0.00044866	0.24369	0.00017044	-0.3978	-0.00027823	699.4085693712417	132.85	5.3043	133.02	132.59	137.89	0.16487					303	103	5	0	0	0	0.73897	1	53734	53734		0.35063	0	1	654640000	+		18167	24015	13100	13199	17773	17773					0.11993630879624106
GRGRRRRQWGL	11	Unmodified	_GRGRRRRQWGL_					0	0	0			REV__ENST00000369756.3_2_6:82461889-82462327:-|nuORF	REV__ENST00000369756.3_2_6:82461889-82462327:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	700.33056640625	2	699.408509	1396.80247	-0.5147	-0.00035999	0.23875	0.00016699	-0.27595	-0.000193	699.4083297436736	148.79	2.5388	148.81	147.47	150.01	0.018707					179	113	4	0	0	0	0.73897	1	57727	57727		0.35063	0	1	763050	+		18168	24015	13100	13199	17774	17774					0.11993630879624106
GRHRRMVISCL	11	Unmodified	_GRHRRMVISCL_					0	0	0			REV__ENST00000567736.5_1_16:89386603-89386735:-|nuORF	REV__ENST00000567736.5_1_16:89386603-89386735:-|nuORF	MSMS	A375_MHC_IP_R2	2	664.294921875	2	664.363533	1326.71251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.02	1	133.18	132.68	133.68	0.16487								0	0	0	0.16258	1	52330	52330		5.2969	0	1		+		18169	26254	13101	13200	17775	17775					0.06222497164571905
GRIDIKQLI	9	Unmodified	_GRIDIKQLI_					0	0	0		ENSG00000057252|ENST00000367619|SOAT1	ENSG00000057252|ENST00000367619|SOAT1	ENSG00000057252|ENST00000367619|SOAT1	MULTI-MSMS	A375_MHC_IP_R1	1	352.95709228515625	3	352.557236	1054.64988	0.15819	5.5771E-05	-0.051072	-1.8006E-05	0.10712	3.7765E-05	352.5571763130506	70.156	0.5603	70.156	69.882	70.442	0					22	10	3	0	0	0	0.085252	1	25453	25453		53.317	9.5443	1	5260900			18170	1282	13102	13201	17776	17776					0.12473997639654044
GRIDIKQLI	9	Unmodified	_GRIDIKQLI_					0	0	0		ENSG00000057252|ENST00000367619|SOAT1	ENSG00000057252|ENST00000367619|SOAT1	ENSG00000057252|ENST00000367619|SOAT1	MULTI-MSMS	A375_MHC_IP_R2	2	352.9567565917969	3	352.557236	1054.64988	-0.12968	-4.5719E-05	-0.52437	-0.00018487	-0.65405	-0.00023059	352.55703424273014	69.146	0.55774	69.881	69.677	70.234	0.73511					25	10	3	0	0	0	0.074562	1	26199	26199		55.235	12.922	1	3736400			18171	1282	13102	13201	17777	17777					0.12473997639654044
GRIDRIIYV	9	Unmodified	_GRIDRIIYV_					0	0	0		SPATA5|p.P785S|1|0.46|ENSG00000145375|chr4:123256028-123256028|C/T|missense_variant;ENSG00000145375|ENST00000274008|SPATA5	SPATA5|p.P785S|1|0.46|ENSG00000145375|chr4:123256028-123256028|C/T|missense_variant	SPATA5|p.P785S|1|0.46|ENSG00000145375|chr4:123256028-123256028|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	369.2890319824219	3	368.888986	1103.64513	0.31536	0.00011633	0.10882	4.0142E-05	0.42418	0.00015647	368.8889920527666	59.677	0.55847	59.677	59.397	59.955	0					25	10	3	0	0	0	0.61363	1	21471	21471		14.218	5.7739	1	6694300			18172	5555	13103	13202	17778	17778					0.09745113496887825
GRIDRIIYV	9	Unmodified	_GRIDRIIYV_					0	0	0		SPATA5|p.P785S|1|0.46|ENSG00000145375|chr4:123256028-123256028|C/T|missense_variant;ENSG00000145375|ENST00000274008|SPATA5	SPATA5|p.P785S|1|0.46|ENSG00000145375|chr4:123256028-123256028|C/T|missense_variant	SPATA5|p.P785S|1|0.46|ENSG00000145375|chr4:123256028-123256028|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	553.2293090820312	2	552.82984	1103.64513	-1.124	-0.00062139	-0.11849	-6.5503E-05	-1.2425	-0.0006869	552.8297639796176	58.685	0.66028	59.433	59.083	59.743	0.74827					22	12	3	0	0	0	0.56537	1	22190	22190		17.113	0.1706	1	3254200			18173	5555	13103	13202	17779	17779					0.09745113496887825
GRIIIPRLL	9	Unmodified	_GRIIIPRLL_					0	0	0			REV__ENST00000577423.2_1_17:62936840-62950208:+|nuORF	REV__ENST00000577423.2_1_17:62936840-62950208:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	351.3095397949219	3	350.909721	1049.70733	-0.51927	-0.00018222	1.4286	0.00050129	0.90929	0.00031908	351.24473990715165	29.653	1.3504	29.653	29.353	30.703	0					60	26	3	0	0	0	0.64808	1	9358	9358		7.609	2.7119	1	15534000	+		18174	26319	13104	13203	17780	17780					0.18446884635886818
GRILQHELK	9	Unmodified	_GRILQHELK_					0	0	0		ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	MULTI-SECPEP	A375_MHC_IP_R1	1	365.9608154296875	3	365.220735	1092.64038	-0.23491	-8.5793E-05	3.3416	0.0012204	3.1067	0.0011346	365.2225558374524	29.354	0.40593	29.354	29.047	29.453	0					13	7	3	0	0	0	0.58271	1	9170	9170		6.6304	0	1	10696000			18175	9313	13105	13204	17781	17781					0.0977622935411091
GRIYTFGG	8	Unmodified	_GRIYTFGG_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-SECPEP	A375_MHC_IP_R1	1	435.2825012207031	2	435.727052	869.439552	-0.027662	-1.2053E-05	0.18149	7.9081E-05	0.15383	6.7028E-05	435.7270798614347	51.435	0.50783	51.435	51.168	51.676	0					15	9	2	0	0	0	0.95424	1	18320	18320		13.906	9.9617	1	2345300			18176	9962	13106	13205	17782	17782					-0.00039039962518927496
GRKGSGPAAL	10	Unmodified	_GRKGSGPAAL_					0	0	0		MAN1A1|p.G212Afs*4|1|0.39|ENSG00000111885|chr6:119306955-119306961|GCATAAC/-|frameshift_variant;nc|ENSG00000111885|P33908-2|MAN1A1;ENSG00000111885|ENST00000368468|MAN1A1	MAN1A1|p.G212Afs*4|1|0.39|ENSG00000111885|chr6:119306955-119306961|GCATAAC/-|frameshift_variant	MAN1A1|p.G212Afs*4|1|0.39|ENSG00000111885|chr6:119306955-119306961|GCATAAC/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	457.6645202636719	2	457.264333	912.514114	-0.0093697	-4.2844E-06	0.19438	8.8882E-05	0.18501	8.4597E-05	457.26432263275507	109.18	6.309	109.18	107.95	114.26	0					351	123	3	0	0	0	0.72014	1	40434	40434		3.2813	3.2813	1	34386000			18177	3038	13107	13206	17783	17783					0.054357228488470355
GRKKGSGR	8	Unmodified	_GRKKGSGR_					0	0	0		ENST00000532868.6_2_11:46366975-46367068:+|nuORF	REV__nc|ENSG00000135486|P09651-3|HNRNPA1	REV__nc|ENSG00000135486|P09651-3|HNRNPA1	MULTI-SECPEP	A375_MHC_IP_R1	1	422.6777038574219	2	423.256843	844.499132	-0.043955	-1.8604E-05	0.018924	8.0099E-06	-0.02503	-1.0594E-05	423.25684132093926	99.038	0.55707	99.038	98.711	99.268	0					16	10	2	0	0	0	0.972	1	36329	36329		2.3027	0	1	1611200			18178	15690	13108	13207	17784	17784					0.07066275771524033
GRKKGSGR	8	Unmodified	_GRKKGSGR_					0	0	0		ENST00000532868.6_2_11:46366975-46367068:+|nuORF	REV__nc|ENSG00000135486|P09651-3|HNRNPA1	REV__nc|ENSG00000135486|P09651-3|HNRNPA1	MULTI-SECPEP	A375_MHC_IP_R2	2	422.6778564453125	2	423.256843	844.499132	-0.16805	-7.1127E-05	0.28273	0.00011967	0.11468	4.8539E-05	423.25691033575174	98.509	1.6792	99.268	97.978	99.657	0.75977					43	32	2	0	0	0	0.972	1	37040	37040		2.3027	2.3027	1	2386800			18179	15690	13108	13207	17785	17785					0.07066275771524033
GRKLQFIVD	9	Unmodified	_GRKLQFIVD_					0	0	0			REV__nc|ENSG00000275111|Q9BSG1-3|ZNF2	REV__nc|ENSG00000275111|Q9BSG1-3|ZNF2	MULTI-SECPEP	A375_MHC_IP_R2	2	358.92083740234375	3	359.213469	1074.61858	-0.47779	-0.00017163	1.3257	0.00047622	0.84793	0.00030459	359.2137144256125	19.122	0.55318	19.725	19.483	20.037	0.60308					14	10	2	0	0	0	0.78753	1	5832	5832		2.4985	0.41248	1	1897900	+		18180	22962	13109	13208	17786	17786					0.0842542460554796
GRKPEKVKI	9	Unmodified	_GRKPEKVKI_					0	0	0			REV__ENST00000533242.1_1_14:24700862-24701497:-|nuORF	REV__ENST00000533242.1_1_14:24700862-24701497:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	351.94146728515625	3	352.229231	1053.66586	-0.33781	-0.00011899	-0.23949	-8.4357E-05	-0.57731	-0.00020334	352.22902394754703	32.746	0.2523	32.746	32.634	32.887	0					6	4	2	0	0	0	0.69381	1	10657	10657		15.248	3.7538	1	1093800	+		18181	25878	13110	13209	17787	17787					0.14117703876559062
GRLATLHSFV	10	Unmodified	_GRLATLHSFV_					0	0	0			REV__ENSG00000187554|ENST00000642603|TLR5	REV__ENSG00000187554|ENST00000642603|TLR5	MULTI-MSMS	A375_MHC_IP_R2	2	368.61468505859375	3	367.545219	1099.61383	-0.020917	-7.6881E-06	1.1238	0.00041306	1.1029	0.00040537	367.5451640718997	34.576	0.81163	35.338	35.015	35.827	0.7613					44	15	4	0	0	0	0.70496	1	12538	12538		5.7834	0	1	13027000	+		18182	22028	13111	13210	17788	17788					0.06800540462813842
GRLLVHILSP	10	Unmodified	_GRLLVHILSP_					0	0	0		ENSG00000143669|ENST00000389793|LYST;ENST00000461526.1_1_1:235901888-235907305:-|nuORF	ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	MULTI-SECPEP	A375_MHC_IP_R2	2	368.6042785644531	3	368.901114	1103.68151	0.38039	0.00014033	-0.24687	-9.107E-05	0.13352	4.9256E-05	368.9011721114353	93.575	0.45679	94.32	94.006	94.463	0.74473					12	8	2	0	0	0	0.95024	1	35506	35506		0.13989	0.13989	1	557740			18183	5423	13112	13211	17789	17789					0.13381990393600063
GRNIPQKAI	9	Unmodified	_GRNIPQKAI_					0	0	0			REV__nc|ENSG00000134982|P25054-2|APC	REV__nc|ENSG00000134982|P25054-2|APC	MULTI-SECPEP	A375_MHC_IP_R1	1	499.2008361816406	2	498.801083	995.587613	-0.46755	-0.00023322	-0.097868	-4.8817E-05	-0.56542	-0.00028203	498.8010183709758	27.254	0.35475	27.254	27.128	27.482	0					11	6	2	0	0	0	0.69504	1	8274	8274		12.532	12.532	1	3064500	+		18184	18815	13113	13212	17790	17790					0.08964271291313253
GRNIPQKAI	9	Unmodified	_GRNIPQKAI_					0	0	0			REV__nc|ENSG00000134982|P25054-2|APC	REV__nc|ENSG00000134982|P25054-2|APC	MULTI-MATCH	A375_MHC_IP_R2	2		2	498.801083	995.587613	-0.90848	-0.00045315	0.55082	0.00027475	-0.35766	-0.0001784	498.80122006334204	26.527	0.35521	27.187	27.008	27.363	0.65992	-0.033612	0.00029247	NaN	12.532	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1680700	+		18185	18815	13113	13212							0.08964271291313253
GRNRLLPQGLA	11	Unmodified	_GRNRLLPQGLA_					0	0	0		ENST00000486707.5_2_1:151733957-151734956:-|nuORF;ENST00000461182.1_1_1:151734815-151735610:-|nuORF;ENSG00000143436|ENST00000368830|MRPL9	ENST00000486707.5_2_1:151733957-151734956:-|nuORF	ENST00000486707.5_2_1:151733957-151734956:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	598.2557983398438	2	597.856921	1193.69929	-0.57147	-0.00034166	-0.98969	-0.00059169	-1.5612	-0.00093335	597.8562083906181	127.35	1.9229	127.62	126.55	128.48	0.26593					122	37	4	0	0	0	0.73078	1	49462	49462		8.1555	2.4237	1	138350000			18186	5390	13114	13213	17791	17791					0.11018705648461946
GRPEFVIKV	9	Unmodified	_GRPEFVIKV_					0	0	0		ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D	ENSG00000167548|ENST00000301067|KMT2D	ENSG00000167548|ENST00000301067|KMT2D	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1817626953125	2	522.813659	1043.61277	-0.37208	-0.00019453	0.24636	0.0001288	-0.12572	-6.5728E-05	522.8137811023611	56.388	0.76204	56.388	55.991	56.753	0					33	14	3	0	0	0	0.30133	1	20219	20219		51.415	19.11	1	14239000			18187	7193	13115	13214	17792	17792					0.09270326093883341
GRPERQFFV	9	Unmodified	_GRPERQFFV_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-SECPEP	A375_MHC_IP_R1	1	379.60498046875	3	379.205085	1134.59343	0.28419	0.00010777	1.6147	0.0006123	1.8989	0.00072007	379.2050079890412	40.905	0.85898	40.905	40.509	41.368	0					44	16	4	0	0	0	0.31606	1	14108	14108		37.075	24.847	1	5785000			18188	3005	13116	13215	17793	17793					0.031513698029812076
GRPERQFFV	9	Unmodified	_GRPERQFFV_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-SECPEP	A375_MHC_IP_R2	2	379.6051025390625	3	379.205085	1134.59343	0.026648	1.0105E-05	-0.11849	-4.493E-05	-0.091838	-3.4825E-05	379.20499142817584	40.054	0.50658	40.829	40.575	41.082	0.77451					22	9	3	0	0	0	0.27742	1	14805	14805		40.725	31.342	1	6680500			18189	3005	13116	13215	17794	17794					0.031513698029812076
GRPERQFFV	9	Unmodified	_GRPERQFFV_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-SECPEP	A375_MHC_IP_R2	2	568.7033081054688	2	568.30399	1134.59343	-0.40747	-0.00023156	0.10146	5.7662E-05	-0.306	-0.0001739	568.3040432787813	40.056	0.70924	40.83	40.575	41.285	0.77451					27	13	3	0	0	0	0.5212	1	14811	14811		26.268	6.9062	1	5424300			18190	3005	13116	13215	17795	17795					0.031513698029812076
GRPLIKNRKS	10	Unmodified	_GRPLIKNRKS_					0	0	0			REV__ENST00000367097.7_1_6:158734068-158734185:+|nuORF	REV__ENST00000367097.7_1_6:158734068-158734185:+|nuORF	MSMS	A375_MHC_IP_R2	2	390.2451477050781	3	390.247285	1167.72002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.94	1	107.7	107.2	108.2	0.75977								0	0	0	0.15588	1	40411	40411		1.7423	0.54893	1		+		18191	23951	13117	13216	17796	17796					0.1428729602812382
GRPQKVEAPW	10	Unmodified	_GRPQKVEAPW_					0	0	0			REV__ENST00000525192.5_1_11:45937841-45939521:-|nuORF	REV__ENST00000525192.5_1_11:45937841-45939521:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	390.28057861328125	3	389.88049	1166.61964	0.067072	2.615E-05	0.86491	0.00033721	0.93199	0.00036336	389.8806918958983	68.59	0.60967	68.59	68.209	68.819	0					19	11	2	0	0	0	0.91932	1	24886	24886		15.739	8.6369	1	3507600	+		18192	25766	13118	13217	17797	17797					0.04299638974453046
GRRCRRRRRGL	11	Unmodified	_GRRCRRRRRGL_					0	0	0			REV__ENST00000369295.3_1_10:115805063-115805390:+|nuORF	REV__ENST00000369295.3_1_10:115805063-115805390:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	481.6917724609375	3	481.292116	1440.85452	-0.53291	-0.00025649	0.43284	0.00020832	-0.10008	-4.8167E-05	481.29222703067006	83.412	0.66043	84.152	83.848	84.508	0.73962					20	12	3	0	0	0	0.73658	1	31728	31728		2.6312	2.6312	1	1529300	+		18193	24007	13119	13218	17798	17798					0.1517247102174224
GRRCRRRRRGL	11	Unmodified	_GRRCRRRRRGL_					0	0	0			REV__ENST00000369295.3_1_10:115805063-115805390:+|nuORF	REV__ENST00000369295.3_1_10:115805063-115805390:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	481.292116	1440.85452	-0.5794	-0.00027886	0.62689	0.00030172	0.047485	2.2854E-05	481.29182485598267	84.428	0.81434	84.428	84.241	85.056	0	0.13805	0.00024801	NaN	2.6312	25	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1996400	+		18194	24007	13119	13218							0.1517247102174224
GRRETILSL	9	Unmodified	_GRRETILSL_					0	0	0		ENST00000229270.8_1_12:6979816-6979882:+|nuORF	ENST00000229270.8_1_12:6979816-6979882:+|nuORF	ENST00000229270.8_1_12:6979816-6979882:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	523.2109985351562	2	522.811648	1043.60874	-0.72577	-0.00037944	0.46552	0.00024338	-0.26025	-0.00013606	522.8117187790964	131.25	1.0102	131.25	131.02	132.03	0					46	19	4	0	0	0	0.78798	1	50586	50586		7.2892	7.2892	1	56452000			18195	10132	13120	13219	17799	17799					0.08868236600187629
GRRETILSL	9	Unmodified	_GRRETILSL_					0	0	0		ENST00000229270.8_1_12:6979816-6979882:+|nuORF	ENST00000229270.8_1_12:6979816-6979882:+|nuORF	ENST00000229270.8_1_12:6979816-6979882:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	522.811648	1043.60874	-0.55775	-0.0002916	0.11536	6.0311E-05	-0.44239	-0.00023128	522.8115368338966	131.07	1.018	131.28	131.01	132.03	0.2142	0.015867	-0.00019752	NaN	7.2892	47	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42127000			18196	10132	13120	13219							0.08868236600187629
GRRFGDRFLL	10	Unmodified	_GRRFGDRFLL_					0	0	0		nc|ENSG00000183117|Q96PZ7-2|CSMD1;CSMD1|p.G3420Afs*7|1|0.38|ENSG00000183117|chr8:2950294-2950294|A/-|frameshift_variant;ENSG00000183117|ENST00000635120|CSMD1;nc|ENSG00000183117|Q96PZ7-4|CSMD1;nc|ENSG00000183117|Q96PZ7-3|CSMD1	nc|ENSG00000183117|Q96PZ7-2|CSMD1	nc|ENSG00000183117|Q96PZ7-2|CSMD1	MULTI-SECPEP	A375_MHC_IP_R1	1	413.3036193847656	3	412.903518	1235.68872	0.45649	0.00018849	1.3482	0.00055669	1.8047	0.00074518	412.90341809738106	45.629	0.4547	45.629	45.384	45.839	0					21	8	3	0	0	0	0.93232	1	15980	15980		7.4771	2.0744	1	3781400			18197	671	13121	13220	17800	17800					0.08030722994021744
GRRFGDRFLL	10	Unmodified	_GRRFGDRFLL_					0	0	0		nc|ENSG00000183117|Q96PZ7-2|CSMD1;CSMD1|p.G3420Afs*7|1|0.38|ENSG00000183117|chr8:2950294-2950294|A/-|frameshift_variant;ENSG00000183117|ENST00000635120|CSMD1;nc|ENSG00000183117|Q96PZ7-4|CSMD1;nc|ENSG00000183117|Q96PZ7-3|CSMD1	nc|ENSG00000183117|Q96PZ7-2|CSMD1	nc|ENSG00000183117|Q96PZ7-2|CSMD1	MULTI-MATCH	A375_MHC_IP_R2	2		3	412.903518	1235.68872	-0.048942	-2.0208E-05	2.0628	0.00085172	2.0138	0.00083151	413.2384399617997	44.58	0.45646	45.349	45.138	45.594	0.76909	-0.14027	0.00068438	NaN	7.4771	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2047600			18198	671	13121	13220							0.08030722994021744
GRRKNIKAYG	10	Unmodified	_GRRKNIKAYG_					0	0	0			REV__CNTNAP2|p.G69R|1|0.22|ENSG00000174469|chr7:146774378-146774378|G/A|missense_variant	REV__CNTNAP2|p.G69R|1|0.22|ENSG00000174469|chr7:146774378-146774378|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	388.6330261230469	3	388.231634	1161.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.459	1	64.459	63.959	64.959	0								0	0	0	0.15539	1	23321	23321		3.3196	0.68841	1		+		18199	15819	13122	13221	17801	17801					0.0987043647696737
GRRLFRRRARG	11	Unmodified	_GRRLFRRRARG_					0	0	0		nc|ENSG00000213079|Q9UPN6-2|SCAF8	nc|ENSG00000213079|Q9UPN6-2|SCAF8	nc|ENSG00000213079|Q9UPN6-2|SCAF8	MULTI-SECPEP	A375_MHC_IP_R2	2	467.0078125	3	467.62386	1399.84975	-0.43937	-0.00020546	0.11702	5.472E-05	-0.32236	-0.00015074	467.62380024332094	137.55	1.2704	137.64	137.45	138.72	0.083969					67	24	4	0	0	0	1.001	1	54012	54012		0.073264	0.073264	1	15229000			18200	14893	13123	13222	17802	17802					0.16581910150625845
GRRLLKRHENN	11	Unmodified	_GRRLLKRHENN_					0	0	0		ENSG00000189079|ENST00000334344|ARID2	ENSG00000189079|ENST00000334344|ARID2	ENSG00000189079|ENST00000334344|ARID2	MULTI-MSMS	A375_MHC_IP_R1	1	465.3350830078125	3	464.935881	1391.78581	-0.4759	-0.00022126	-0.4836	-0.00022484	-0.9595	-0.0004461	464.93552695202214	132.35	1.9309	132.35	131.83	133.76	0					78	37	4	0	0	0	0.73135	2	51079	51011;51079		3.8459	2.7362	1	19793000			18201	8957	13124	13223	17803;17804	17804					0.10559085203021823
GRRLLKRHENN	11	Unmodified	_GRRLLKRHENN_					0	0	0		ENSG00000189079|ENST00000334344|ARID2	ENSG00000189079|ENST00000334344|ARID2	ENSG00000189079|ENST00000334344|ARID2	MULTI-MSMS	A375_MHC_IP_R2	2	464.98126220703125	3	464.935881	1391.78581	-0.61569	-0.00028626	-0.14302	-6.6496E-05	-0.75871	-0.00035275	464.935589948293	131.34	1.0682	131.53	130.93	132	0.18954					55	20	4	0	0	0	0.73459	2	51671	51615;51671		2.084	1.0704	1	7614100			18202	8957	13124	13223	17805;17806	17806					0.10559085203021823
GRRLLKRHENN	11	Unmodified	_GRRLLKRHENN_					0	0	0		ENSG00000189079|ENST00000334344|ARID2	ENSG00000189079|ENST00000334344|ARID2	ENSG00000189079|ENST00000334344|ARID2	MULTI-MSMS	A375_MHC_IP_R2	2	464.98138427734375	3	464.935881	1391.78581	-0.58606	-0.00027248	-0.57917	-0.00026928	-1.1652	-0.00054176	464.93550188453344	132.32	1.3726	132.51	132	133.37	0.18953					75	26	4	0	0	0	0.72728	1	52033	52033		6.2344	5.0195	1	15039000			18203	8957	13124	13223	17807	17807					0.10559085203021823
GRRRLQLIV	9	Unmodified	_GRRRLQLIV_					0	0	0			REV__nc|ENSG00000117090|Q13291-2|SLAMF1	REV__nc|ENSG00000117090|Q13291-2|SLAMF1	MULTI-SECPEP	A375_MHC_IP_R1	1	371.312255859375	3	370.912125	1109.71454	0.09528	3.534E-05	0.19034	7.0601E-05	0.28562	0.00010594	370.91218403827054	36.47	0.45924	36.47	36.184	36.644	0					19	8	3	0	0	0	0.81166	1	12225	12225		0.23584	0.23584	1	3363800	+		18204	17991	13125	13224	17808	17808					0.16407617236313854
GRRRMRRTRRR	11	Unmodified	_GRRRMRRTRRR_					0	0	0		ENST00000423021.2_1_9:5112335-5112581:+|nuORF	ENST00000423021.2_1_9:5112335-5112581:+|nuORF	ENST00000423021.2_1_9:5112335-5112581:+|nuORF	MSMS	A375_MHC_IP_R1	1	519.6757202148438	3	519.650303	1555.92908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.196	1	82.196	81.696	82.696	0								0	0	0	0.16358	1	30051	30051		0.094841	0.094841	1				18205	11754	13126	13225	17809	17809					0.17335233833114216
GRRRRKRRIRV	11	Unmodified	_GRRRRKRRIRV_					0	0	0			REV__ENST00000480896.5_1_21:47746291-47746405:+|nuORF	REV__ENST00000480896.5_1_21:47746291-47746405:+|nuORF	MSMS	A375_MHC_IP_R1	1	755.1456298828125	2	755.0009	1507.98725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.13	1	128.13	127.63	128.63	0								0	0	0	0.1636	1	49187	49187		0	0	1		+		18206	25248	13127	13226	17810	17810					0.253572387500526
GRRRRRERPWR	11	Unmodified	_GRRRRRERPWR_					0	0	0		ENST00000278823.6_1_11:62366051-62368981:-|nuORF	ENST00000278823.6_1_11:62366051-62368981:-|nuORF	ENST00000278823.6_1_11:62366051-62368981:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	528.064208984375	3	527.645435	1579.91448	-0.2985	-0.0001575	-2.4083	-0.0012707	-2.7068	-0.0014282	527.643723470668	148.97	0.51506	148.99	148.8	149.31	0.018707					10	9	2	0	0	0	1.0015	1	57943	57943		0.094841	0.094841	1	82014			18207	10412	13128	13227	17811	17811					0.1477148495662277
GRRRRRRQVGH	11	Unmodified	_GRRRRRRQVGH_					0	0	0		ENST00000373647.8_1_9:125703301-125719293:+|nuORF	ENST00000373647.8_1_9:125703301-125719293:+|nuORF	ENST00000373647.8_1_9:125703301-125719293:+|nuORF	MSMS	A375_MHC_IP_R1	1	717.560546875	2	717.430307	1432.84606	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.69	1	118.69	118.19	119.19	0								0	0	0	0.16297	1	43767	43767		3.2813	1.1953	1				18208	11238	13129	13228	17812	17812					0.14695240376750007
GRRWSYRRRSR	11	Unmodified	_GRRWSYRRRSR_					0	0	0			REV__ENST00000491215.1_1_6:32163881-32163974:-|nuORF	REV__ENST00000491215.1_1_6:32163881-32163974:-|nuORF	MSMS	A375_MHC_IP_R2	2	768.28271484375	2	768.429973	1534.84539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.961	1	92.7	92.2	93.2	0.73902								0	0	0	0.16334	1	34974	34974		1.3295	0.13619	1		+		18209	25399	13130	13229	17813	17813					0.09936400937044709
GRSERLVP	8	Unmodified	_GRSERLVP_					0	0	0			REV__ENST00000434116.6_1_15:65916409-65944223:+|nuORF	REV__ENST00000434116.6_1_15:65916409-65944223:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	913.920654296875	1	913.52139	912.514114	0.092601	8.4593E-05	0.28098	0.00025668	0.37358	0.00034128	913.5215630513881	109.19	4.3291	109.19	108.26	112.59	0					125	84	2	0	0	0	0.77717	1	41029	41029		5.2307	0	1	3497000	+		18210	24736	13131	13230	17814	17814					0.05435722848858404
GRSLVVGL	8	Unmodified	_GRSLVVGL_					0	0	0			REV__nc|ENSG00000151062|Q7Z3S7-2|CACNA2D4	REV__nc|ENSG00000151062|Q7Z3S7-2|CACNA2D4	MULTI-SECPEP	A375_MHC_IP_R1	1	401.1529235839844	2	400.75307	799.491587	-0.24687	-9.8933E-05	0.29546	0.00011841	0.048594	1.9474E-05	400.75310121692	40.737	0.40416	40.737	40.559	40.963	0					11	7	2	0	0	0	0.96873	1	14058	14058		12.241	2.1667	1	1539500	+		18211	19737	13132	13231	17815	17815					0.08382123451235657
GRTEILKWY	9	Unmodified	_GRTEILKWY_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	A375_MHC_IP_R1	1	389.6168518066406	3	389.216991	1164.62914	0.15698	6.1097E-05	-0.057473	-2.2369E-05	0.099503	3.8728E-05	389.2168842673342	61.399	0.61158	61.399	61.126	61.737	0					19	11	3	0	0	0	0.6629	1	22168	22168		10.315	5.2677	1	2336800			18212	4815	13133	13232	17816	17816					0.053414072599935025
GRTEILKWY	9	Unmodified	_GRTEILKWY_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	A375_MHC_IP_R2	2	389.6169128417969	3	389.216991	1164.62914	-0.45303	-0.00017633	0.45123	0.00017563	-0.0018065	-7.0312E-07	389.21701863806567	60.574	0.50928	61.319	61.006	61.515	0.74503					19	9	3	0	0	0	0.35164	1	22941	22941		27.088	17.324	1	2435500			18213	4815	13133	13232	17817	17817					0.053414072599935025
GRVCAKCA	8	Unmodified	_GRVCAKCA_					0	0	0		ENST00000260061.9_1_11:76376994-76381742:-|nuORF	ENST00000260061.9_1_11:76376994-76381742:-|nuORF	ENST00000260061.9_1_11:76376994-76381742:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	404.6015625	2	404.201833	806.389113	0.21195	8.5671E-05	-0.058943	-2.3825E-05	0.15301	6.1847E-05	404.20174646729527	111.91	0.71346	112.63	112.36	113.07	0.72458					21	13	2	0	0	0	0.77839	1	42156	42156		0.79363	0	1	3529600			18214	10264	13134	13233	17818	17818					-0.021826088835496193
GRVFIIKSY	9	Unmodified	_GRVFIIKSY_					0	0	0		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2;ENST00000604759.1_1_14:39684672-39685536:+|nuORF;ENSG00000149658|ENST00000370339|YTHDF1;ENSG00000185728|ENST00000539294|YTHDF3	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000149658|ENST00000370339|YTHDF1;ENSG00000185728|ENST00000539294|YTHDF3	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-SECPEP	A375_MHC_IP_R2	2	361.95013427734375	3	361.550082	1081.62842	-0.081897	-2.961E-05	-0.2609	-9.4329E-05	-0.3428	-0.00012394	361.54999217948824	48.016	0.30075	48.777	48.582	48.883	0.76128					9	5	2	0	0	0	0.7713	1	18052	18052		12.175	9.4395	1	1521100			18215	9273;5825;8688	13135	13234	17819	17819					0.09086612610940392
GRVHHLAL	8	Unmodified	_GRVHHLAL_					0	0	0		ENSG00000148358|ENST00000347136|GPR107;nc|ENSG00000148358|Q5VW38|GPR107;nc|ENSG00000148358|Q5VW38-3|GPR107	ENSG00000148358|ENST00000347136|GPR107	ENSG00000148358|ENST00000347136|GPR107	MULTI-MSMS	A375_MHC_IP_R2	2	902.9314575195312	1	902.531895	901.524619	-0.22459	-0.0002027	-0.29718	-0.00026821	-0.52177	-0.00047091	902.531490662952	144.72	0.10815	144.74	144.65	144.76	0.021408					4	2	2	0	0	0	0.77861	1	56525	56525		0	0	1	494530			18216	5737	13136	13235	17820	17820					0.0699175029392336
GRWKSRYC	8	Unmodified	_GRWKSRYC_					0	0	0		ENST00000368494.3_1_6:118015200-118015341:+|nuORF	ENST00000368494.3_1_6:118015200-118015341:+|nuORF	ENST00000368494.3_1_6:118015200-118015341:+|nuORF	MSMS	A375_MHC_IP_R2	2	528.2210083007812	2	528.26381	1054.51307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.28	1	145.3	144.8	145.8	0.021408								0	0	0	0.16876	1	56724	56724		2.0598	0.21551	1				18217	11116	13137	13236	17821	17821					-0.012008147917185852
GRYGLFPERL	10	Unmodified	_GRYGLFPERL_					0	0	0		ENSG00000214193|ENST00000453908|SH3D21	ENSG00000214193|ENST00000453908|SH3D21	ENSG00000214193|ENST00000453908|SH3D21	MULTI-SECPEP	A375_MHC_IP_R2	2	403.62408447265625	3	403.224257	1206.65094	-0.31082	-0.00012533	0.099053	3.9941E-05	-0.21176	-8.5388E-05	403.22427875736787	38.241	0.56144	39.015	38.739	39.3	0.77451					25	10	3	0	0	0	0.70461	1	14048	14048		36.395	36.395	1	6948500			18218	9608	13138	13237	17822	17822					0.05588212008547089
GRYPEAQSV	9	Unmodified	_GRYPEAQSV_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7;ENST00000403909.2_1_6:139659748-139659847:+|nuORF	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-SECPEP	A375_MHC_IP_R1	1	504.15069580078125	2	503.751256	1005.48796	-0.35214	-0.00017739	-0.51987	-0.00026189	-0.87202	-0.00043928	503.75104166062266	25.133	0.96323	25.133	24.903	25.866	0					50	18	4	0	0	0	0.01147	1	7250	7250		121.53	66.761	1	184300000			18219	7279	13139	13238	17823	17823					-0.014565911132876863
GRYPEAQSV	9	Unmodified	_GRYPEAQSV_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7;ENST00000403909.2_1_6:139659748-139659847:+|nuORF	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-SECPEP	A375_MHC_IP_R2	2	504.15069580078125	2	503.751256	1005.48796	-1.0319	-0.0005198	-0.3033	-0.00015279	-1.3352	-0.00067259	503.7511897117609	24.599	0.86385	25.242	25.009	25.873	0.64368					58	16	5	0	0	0	0.01147	1	8060	8060		121.53	52.429	1	127140000			18220	7279	13139	13238	17824	17824					-0.014565911132876863
GSACCGGQ	8	Unmodified	_GSACCGGQ_					0	0	0		ENST00000368301.6_1_1:156052803-156060269:+|nuORF	ENST00000368301.6_1_1:156052803-156060269:+|nuORF	ENST00000368301.6_1_1:156052803-156060269:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	681.6277465820312	1	682.228321	681.221045	-0.54655	-0.00037287	-1.8818	-0.0012838	-2.4283	-0.0016567	682.2285906061456	90.734	0.91087	91.468	91.211	92.122	0.73451					29	17	2	0	0	0	0.972	1	34520	34520		2.5775	0	1	1698500			18221	11110	13140	13239	17825	17825					-0.13231715868005267
GSADKTVALW	10	Unmodified	_GSADKTVALW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-4|RBBP4;ENST00000502424.1_1_5:14797477-14798464:-|nuORF	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-MSMS	A375_MHC_IP_R1	1	524.6950073242188	2	524.277106	1046.53966	-0.6275	-0.00032898	0.085064	4.4597E-05	-0.54244	-0.00028439	524.2772223232433	65.775	0.71075	65.775	65.462	66.173	0					26	13	2	0	0	0	0.059572	2	23813	23769;23813		73.196	73.196	1	9217700			18222	6544	13141	13240	17826;17827	17827					0.01825152580613576
GSAEAPLQY	9	Unmodified	_GSAEAPLQY_					0	0	0		ENSG00000177370|ENST00000327158|TIMM22	ENSG00000177370|ENST00000327158|TIMM22	ENSG00000177370|ENST00000327158|TIMM22	MULTI-MSMS	A375_MHC_IP_R1	1	936.509765625	1	935.446888	934.439611	-0.014594	-1.3652E-05	0.38453	0.00035971	0.36993	0.00034605	935.447119817813	53.506	0.66208	53.506	53.199	53.861	0					24	12	3	0	0	0	0.22528	1	19122	19122		36.127	0	1	7618700			18223	8077	13142	13241	17828	17828					-0.030230847531925065
GSAEAPLQY	9	Unmodified	_GSAEAPLQY_					0	0	0		ENSG00000177370|ENST00000327158|TIMM22	ENSG00000177370|ENST00000327158|TIMM22	ENSG00000177370|ENST00000327158|TIMM22	MULTI-MATCH	A375_MHC_IP_R2	2		1	935.446888	934.439611	-0.75186	-0.00070332	0.60167	0.00056283	-0.15019	-0.00014049	935.4473476452964	52.812	0.60888	53.563	53.233	53.842	0.75105	0.028918	5.5847E-05	NaN	36.127	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7901800			18224	8077	13142	13241							-0.030230847531925065
GSAEEETTPPP	11	Unmodified	_GSAEEETTPPP_					0	0	0			REV__CIC|p.V442Gfs*2|1|0.14|ENSG00000079432|chr19:42289371-42289393|TCATCTGTGAGGAGGAAGGGGAT/-|frameshift_variant	REV__CIC|p.V442Gfs*2|1|0.14|ENSG00000079432|chr19:42289371-42289393|TCATCTGTGAGGAGGAAGGGGAT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	558.1481323242188	2	557.748576	1113.4826	-1.419	-0.00079146	0.23736	0.00013239	-1.1817	-0.00065907	557.7486076677072	29.484	0.75779	30.183	29.981	30.739	0.69872					28	14	4	0	0	0	0.33856	1	10293	10293		43.772	12.504	1	6410400	+		18225	15791	13143	13242	17829	17829					-0.0696035948642475
GSAITUQC	8	Unmodified	_GSAITUQC_					0	0	0		ENSG00000250722|ENST00000514985|SELENOP	ENSG00000250722|ENST00000514985|SELENOP	ENSG00000250722|ENST00000514985|SELENOP	MULTI-SECPEP	A375_MHC_IP_R1	1	829.6654052734375	1	830.261587	829.254311	-0.55542	-0.00046114	2.3603	0.0019596	1.8048	0.0014985	830.2670046123476	3.0659	0.5284	3.0659	2.8821	3.4105	0					124	78	3	0	0	0	0.972	1	714	714		0	0	0	202860			18226	9849	13144	13243	17830	17830					-0.16714634379400195
GSAKISPHIKV	11	Unmodified	_GSAKISPHIKV_					0	0	0		ENST00000347464.9_1_2:234203284-234203401:+|nuORF	ENST00000347464.9_1_2:234203284-234203401:+|nuORF	ENST00000347464.9_1_2:234203284-234203401:+|nuORF	MSMS	A375_MHC_IP_R1	1	379.3074035644531	3	379.564391	1135.67134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.308	1	77.308	76.808	77.808	0								0	0	0	0.16191	1	28200	28200		8.7518	1.2747	1				18227	10913	13145	13244	17831	17831					0.10893382668336926
GSAKQPAL	8	Unmodified	_GSAKQPAL_					0	0	0			REV__ENSG00000215474|ENST00000425639|SKOR2	REV__ENSG00000215474|ENST00000425639|SKOR2	MULTI-SECPEP	A375_MHC_IP_R1	1	385.5992126464844	2	386.221603	770.428653	0.303	0.00011702	0.10241	3.9554E-05	0.40541	0.00015658	386.22161233048354	34.959	0.50951	34.959	34.759	35.269	0					19	9	3	0	0	0	0.92636	1	11626	11626		23.148	2.6948	1	6301100	+		18228	22676	13146	13245	17832	17832					0.03425557663183554
GSALANLISQY	11	Unmodified	_GSALANLISQY_					0	0	0		ENST00000495425.6_1_17:19458825-19480863:+|nuORF;ENSG00000142494|ENST00000270570|SLC47A1;nc|ENSG00000142494|Q96FL8-3|SLC47A1;nc|ENSG00000142494|Q96FL8-2|SLC47A1;ENST00000497548.5_1_17:19437252-19459239:+|nuORF	ENST00000495425.6_1_17:19458825-19480863:+|nuORF	ENST00000495425.6_1_17:19458825-19480863:+|nuORF	MSMS	A375_MHC_IP_R2	2	379.5959167480469	3	379.536389	1135.58734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.276	1	24.92	24.42	25.42	0.64368								0	0	0	0.1534	1	7950	7950		11.065	1.301	1				18229	5310	13147	13246	17833	17833					0.024968067808231353
GSALPRLY	8	Unmodified	_GSALPRLY_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C;nc|ENSG00000184083|Q9NX05-2|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-SECPEP	A375_MHC_IP_R1	1	439.1512756347656	2	438.750527	875.486502	-0.11356	-4.9824E-05	0.75882	0.00033293	0.64526	0.00028311	438.7508255986169	60.083	0.5089	60.083	59.854	60.363	0					17	9	2	0	0	0	0.69122	1	21645	21645		39.957	21.822	1	2410500			18230	8550	13148	13247	17834	17834					0.043778195886034155
GSALPRLY	8	Unmodified	_GSALPRLY_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C;nc|ENSG00000184083|Q9NX05-2|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-SECPEP	A375_MHC_IP_R2	2	439.1500244140625	2	438.750527	875.486502	-0.71794	-0.00031499	0.17388	7.6289E-05	-0.54406	-0.00023871	438.75049365173305	59.239	0.55716	59.986	59.691	60.249	0.74714					18	10	2	0	0	0	0.51146	1	22423	22423		61.357	32.871	1	1994600			18231	8550	13148	13247	17835	17835					0.043778195886034155
GSANLQTQW	9	Unmodified	_GSANLQTQW_					0	0	0		ENSG00000173852|ENST00000638088|DPY19L1;nc|ENSG00000173852|Q2PZI1|DPY19L1;ENST00000426647.2_1_7:32852458-32867019:+|nuORF	ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1429748535156	2	502.743431	1003.47231	-0.93064	-0.00046787	2.3157	0.0011642	1.3851	0.00069633	502.74332465666413	58.299	0.81051	59.048	58.528	59.338	0.74895					36	15	3	0	0	0	0.019499	1	22024	22024		103.42	52.564	1	3605900			18232	7835	13149	13248	17836	17836					-0.029288776303360464
GSAPDVPAV	9	Unmodified	_GSAPDVPAV_					0	0	0		ENSG00000166716|ENST00000560079|ZNF592	ENSG00000166716|ENST00000560079|ZNF592	ENSG00000166716|ENST00000560079|ZNF592	MULTI-SECPEP	A375_MHC_IP_R2	2	812.8138427734375	1	812.414859	811.407583	-1.4491	-0.0011773	0.72649	0.00059021	-0.72259	-0.00058704	812.4152362876299	53.27	0.61107	54.021	53.638	54.249	0.75105					15	11	2	0	0	0	0.16229	1	20069	20069		57.471	11.45	1	2961500			18233	7106	13150	13249	17837	17837					-0.005664524363282908
GSAPDVPAV	9	Unmodified	_GSAPDVPAV_					0	0	0		ENSG00000166716|ENST00000560079|ZNF592	ENSG00000166716|ENST00000560079|ZNF592	ENSG00000166716|ENST00000560079|ZNF592	MULTI-MATCH	A375_MHC_IP_R1	1		1	812.414859	811.407583	-0.204	-0.00016574	-0.0031137	-2.5296E-06	-0.20712	-0.00016827	812.4148451720586	53.95	0.55683	53.95	53.656	54.213	0	-0.035456	-0.00030327	NaN	57.471	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3125900			18234	7106	13150	13249							-0.005664524363282908
GSARRAPRWG	10	Unmodified	_GSARRAPRWG_					0	0	0			REV__ENST00000340648.5_1_21:45079492-45079627:+|nuORF	REV__ENST00000340648.5_1_21:45079492-45079627:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	372.615478515625	3	371.872329	1112.59516	0.098901	3.6778E-05	0.32343	0.00012027	0.42233	0.00015705	372.20572865672176	38.275	0.50934	39.05	38.791	39.3	0.77451					14	9	2	0	0	0	0.93594	1	14018	14018		2.6312	0.88896	1	1847100	+		18235	23720	13151	13250	17838	17838					0.04336423611584905
GSASVNSRW	9	Unmodified	_GSASVNSRW_					0	0	0		ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	482.6352233886719	2	482.235773	962.456993	-0.47183	-0.00022753	-0.30246	-0.00014586	-0.77429	-0.00037339	482.23556113199515	27.204	0.55623	27.204	27.027	27.584	0					19	10	2	0	0	0	0.0098926	1	8219	8219		118.07	55.496	1	21484000			18236	5425	13152	13251	17839	17839					-0.02573744427525071
GSASVNSRW	9	Unmodified	_GSASVNSRW_					0	0	0		ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	482.63525390625	2	482.235773	962.456993	-0.93616	-0.00045145	-0.15523	-7.4859E-05	-1.0914	-0.00052631	482.2355984821886	26.611	0.45909	27.271	27.109	27.568	0.65992					17	8	3	0	0	0	0.0098085	1	9021	9021		114.2	64.269	1	11228000			18237	5425	13152	13251	17840	17840					-0.02573744427525071
GSCCCECW	8	Unmodified	_GSCCCECW_					0	0	0			REV__ENST00000262520.10_1_16:30996539-30997136:+|nuORF	REV__ENST00000262520.10_1_16:30996539-30997136:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	889.6310424804688	1	890.229977	889.222701	-0.52476	-0.00046716	1.5762	0.0014032	1.0514	0.00093601	890.2336284550393	137.15	2.2579	137.15	135.95	138.2	0					59	43	2	0	0	0	0.972	1	52603	52603		0.79363	0.79363	1	961220	+		18238	23209	13153	13252	17841	17841					-0.22634166165914849
GSDAELEPWV	10	Unmodified	_GSDAELEPWV_					0	0	0		ZNF394|p.G17E|1|0.21|ENSG00000160908|chr7:99500044-99500044|C/T|missense_variant	ZNF394|p.G17E|1|0.21|ENSG00000160908|chr7:99500044-99500044|C/T|missense_variant	ZNF394|p.G17E|1|0.21|ENSG00000160908|chr7:99500044-99500044|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	552.1561279296875	2	551.756204	1101.49785	-0.7371	-0.0004067	0.45308	0.00024999	-0.28402	-0.00015671	551.7564634703183	52.965	0.55634	52.965	52.643	53.199	0					19	10	3	0	0	0	0.78945	1	18877	18877		13.906	3.1065	1	2656300			18239	30216	13154	13253	17842	17842					-0.0488344789855546
GSDCTTIHY	9	Carbamidomethyl (C)	_GSDC(Carbamidomethyl (C))TTIHY_	GSDC(1)TTIHY		GSDC(130)TTIHY		0	1	0		nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.N268Ifs*85|1|0.88|ENSG00000141510|chr17:7673817-7673818|-/TCCGTCCCAGTAGATTACCACTA|frameshift_variant;ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-5|TP53;nc|ENSG00000141510|P04637-6|TP53;nc|ENSG00000141510|P04637-4|TP53;nc|ENSG00000141510|P04637-8|TP53;nc|ENSG00000141510|P04637-9|TP53;nc|ENSG00000141510|P04637-7|TP53	nc|ENSG00000141510|P04637-2|TP53	nc|ENSG00000141510|P04637-2|TP53	MULTI-MSMS	A375_MHC_IP_R1	1	527.64697265625	2	527.218931	1052.42331	-0.85436	-0.00045043	-0.36592	-0.00019292	-1.2203	-0.00064335	527.2187470131169	29.911	0.54823	29.911	29.703	30.251	0					27	10	3	0	0	0	0.010057	1	9472	9472		125.62	77.876	1	78346000			18240	5248	13155	13254	17843	17843	35				-0.10080533981590634
GSDCTTIHY	9	Carbamidomethyl (C)	_GSDC(Carbamidomethyl (C))TTIHY_	GSDC(1)TTIHY		GSDC(150)TTIHY		0	1	0		nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.N268Ifs*85|1|0.88|ENSG00000141510|chr17:7673817-7673818|-/TCCGTCCCAGTAGATTACCACTA|frameshift_variant;ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-5|TP53;nc|ENSG00000141510|P04637-6|TP53;nc|ENSG00000141510|P04637-4|TP53;nc|ENSG00000141510|P04637-8|TP53;nc|ENSG00000141510|P04637-9|TP53;nc|ENSG00000141510|P04637-7|TP53	nc|ENSG00000141510|P04637-2|TP53	nc|ENSG00000141510|P04637-2|TP53	MULTI-MSMS	A375_MHC_IP_R2	2	527.6181030273438	2	527.218931	1052.42331	-1.3177	-0.0006947	-0.18061	-9.522E-05	-1.4983	-0.00078992	527.2188692162379	29.308	0.65413	30.007	29.78	30.434	0.69872					35	12	4	0	0	0	0.0016247	3	10184	10184;10213;10282		147.83	96.201	1	69681000			18241	5248	13155	13254	17844;17845;17846	17844	35				-0.10080533981590634
GSDCTTIHY	9	Unmodified	_GSDCTTIHY_					0	0	0		nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.N268Ifs*85|1|0.88|ENSG00000141510|chr17:7673817-7673818|-/TCCGTCCCAGTAGATTACCACTA|frameshift_variant;ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-5|TP53;nc|ENSG00000141510|P04637-6|TP53;nc|ENSG00000141510|P04637-4|TP53;nc|ENSG00000141510|P04637-8|TP53;nc|ENSG00000141510|P04637-9|TP53;nc|ENSG00000141510|P04637-7|TP53	nc|ENSG00000141510|P04637-2|TP53	nc|ENSG00000141510|P04637-2|TP53	MULTI-SECPEP	A375_MHC_IP_R1	1	499.1078186035156	2	498.708199	995.401846	-0.34959	-0.00017434	-0.18925	-9.4379E-05	-0.53883	-0.00026872	498.7081073234953	33.793	1.01	33.793	33.547	34.557	0					41	19	3	0	0	0	0.043556	1	11064	11064		89.427	25.864	1	8858500			18242	5248	13155	13255	17847	17847					-0.09603919010305617
GSDDTELRY	9	Unmodified	_GSDDTELRY_					0	0	0		ENST00000487284.2_1_7:101917466-101926379:+|nuORF;nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENST00000560541.5_1_7:101556607-101926379:+|nuORF	ENST00000487284.2_1_7:101917466-101926379:+|nuORF	ENST00000487284.2_1_7:101917466-101926379:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	528.6356811523438	2	528.235635	1054.45672	-0.50462	-0.00026656	0.086254	4.5562E-05	-0.41837	-0.000221	528.2357023827363	33.97	0.60597	33.97	33.597	34.203	0					21	11	3	0	0	0	0.0014143	2	11118	11118;11153		149.91	111.94	1	7572600			18243	12594	13156	13256	17848;17849	17848					-0.06833208938041935
GSDDTELRY	9	Unmodified	_GSDDTELRY_					0	0	0		ENST00000487284.2_1_7:101917466-101926379:+|nuORF;nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENST00000560541.5_1_7:101556607-101926379:+|nuORF	ENST00000487284.2_1_7:101917466-101926379:+|nuORF	ENST00000487284.2_1_7:101917466-101926379:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	529.1838989257812	2	528.235635	1054.45672	-0.80811	-0.00042687	0.11929	6.3015E-05	-0.68881	-0.00036386	528.2358070226007	33.313	0.76343	34.066	33.635	34.399	0.75225					26	14	4	0	0	0	0.029064	2	11924	11831;11924		75.761	46.679	1	9358500			18244	12594	13156	13256	17850;17851	17851					-0.06833208938041935
GSDEPAFMYY	10	Oxidation (M)	_GSDEPAFM(Oxidation (M))YY_		GSDEPAFM(1)YY		GSDEPAFM(55)YY	0	0	1		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	A375_MHC_IP_R1	1	598.6339721679688	2	598.234247	1194.45394	-0.53031	-0.00031725	0.10033	6.002E-05	-0.42998	-0.00025723	598.2343268441795	80.801	0.65974	80.801	80.492	81.151	0					24	12	3	0	0	0	0.14594	1	29516	29516		54.774	42.242	1	4756400			18245	6126	13157	13257	17852	17852		326			-0.13550800387224626
GSDEPAFMYY	10	Oxidation (M)	_GSDEPAFM(Oxidation (M))YY_		GSDEPAFM(1)YY		GSDEPAFM(68)YY	0	0	1		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-SECPEP	A375_MHC_IP_R2	2	598.0568237304688	2	598.234247	1194.45394	-0.54731	-0.00032742	-0.4253	-0.00025443	-0.97261	-0.00058185	598.2341790052665	80.308	0.55701	81.052	80.657	81.214	0.74473					24	10	3	0	0	0	0.063796	1	30439	30439		68.081	60.472	1	4854100			18246	6126	13157	13257	17853	17853		326			-0.13550800387224626
GSDFYSMHY	9	Unmodified	_GSDFYSMHY_					0	0	0		ENSG00000196704|ENST00000359904|AMZ2;ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2	ENSG00000196704|ENST00000359904|AMZ2	ENSG00000196704|ENST00000359904|AMZ2	MULTI-MSMS	A375_MHC_IP_R1	1	554.1157836914062	2	553.716024	1105.4175	-0.55402	-0.00030677	0.1151	6.3731E-05	-0.43892	-0.00024304	553.7160575571506	60.404	0.45831	60.404	60.159	60.618	0					16	8	2	0	0	0	0.03063	1	21763	21763		74.423	61.891	1	2107100			18247	9078	13158	13258	17854	17854					-0.1309963249325392
GSDFYSMHY	9	Unmodified	_GSDFYSMHY_					0	0	0		ENSG00000196704|ENST00000359904|AMZ2;ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2	ENSG00000196704|ENST00000359904|AMZ2	ENSG00000196704|ENST00000359904|AMZ2	MULTI-MSMS	A375_MHC_IP_R2	2	554.1156616210938	2	553.716024	1105.4175	-1.1417	-0.00063219	0.072103	3.9924E-05	-1.0696	-0.00059227	553.7159710017893	59.798	0.55495	60.545	60.249	60.804	0.74714					15	10	2	0	0	0	0.03063	1	22654	22654		74.423	54.008	1	1889900			18248	9078	13158	13258	17855	17855					-0.1309963249325392
GSDGLVKLW	9	Unmodified	_GSDGLVKLW_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	A375_MHC_IP_R1	1	488.1685485839844	2	487.768917	973.523281	-0.24928	-0.00012159	0.27502	0.00013415	0.025737	1.2554E-05	487.7690040097511	89.426	0.91125	89.426	89.019	89.931	0					34	17	4	0	0	0	0.004184	1	32818	32818		160.52	82.367	1	6883200			18249	8524	13159	13259	17856	17856					0.03546071414530161
GSDGLVKLW	9	Unmodified	_GSDGLVKLW_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	A375_MHC_IP_R2	2	488.1683654785156	2	487.768917	973.523281	-0.5124	-0.00024993	-0.13022	-6.3518E-05	-0.64262	-0.00031345	487.7688043952717	88.64	0.70934	89.371	88.976	89.685	0.7318					29	13	3	0	0	0	0.0054362	1	33674	33674		134.3	66.215	1	7239000			18250	8524	13159	13259	17857	17857					0.03546071414530161
GSDGTLCVEY	10	Unmodified	_GSDGTLCVEY_					0	0	0			REV__ENSG00000113209|ENST00000231134|PCDHB5	REV__ENSG00000113209|ENST00000231134|PCDHB5	MULTI-MSMS	A375_MHC_IP_R1	1	522.185302734375	2	522.221139	1042.42773	-0.68979	-0.00036022	0.22839	0.00011927	-0.46139	-0.00024095	522.2212610146972	38.307	1.0697	38.307	37.964	39.033	0					47	20	3	0	0	0	0.53946	1	13215	13215		25.399	1.3787	1	9853700	+		18251	17769	13160	13260	17858	17858					-0.09179069558695119
GSDGTLCVEY	10	Unmodified	_GSDGTLCVEY_					0	0	0			REV__ENSG00000113209|ENST00000231134|PCDHB5	REV__ENSG00000113209|ENST00000231134|PCDHB5	MULTI-MSMS	A375_MHC_IP_R2	2	522.1846923828125	2	522.221139	1042.42773	-0.83843	-0.00043785	-0.11747	-6.1345E-05	-0.9559	-0.00049919	522.2210821973854	37.693	1.4804	38.468	37.87	39.351	0.77451					53	28	3	0	0	0	0.53946	1	14017	14017		25.399	1.3787	1	10083000	+		18252	17769	13160	13260	17859	17859					-0.09179069558695119
GSDKINYTY	9	Unmodified	_GSDKINYTY_					0	0	0		nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;ENSG00000186416|ENST00000688521|NKRF	nc|ENSG00000186416|O15226|NKRF	nc|ENSG00000186416|O15226|NKRF	MULTI-MSMS	A375_MHC_IP_R1	1	531.1506958007812	2	530.750921	1059.48729	-0.62391	-0.00033114	0.063679	3.3797E-05	-0.56023	-0.00029734	530.7509212518034	34.175	0.91159	34.175	33.848	34.759	0					53	17	5	0	0	0	0.0018976	2	11217	11217;11305		145.13	80.893	1	84398000			18253	8746	13161	13261	17860;17861	17860					-0.040074305529969934
GSDKINYTY	9	Unmodified	_GSDKINYTY_					0	0	0		nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;ENSG00000186416|ENST00000688521|NKRF	nc|ENSG00000186416|O15226|NKRF	nc|ENSG00000186416|O15226|NKRF	MULTI-MSMS	A375_MHC_IP_R2	2	530.6949462890625	2	530.750921	1059.48729	-1.0807	-0.00057361	0.056749	3.0119E-05	-1.024	-0.00054349	530.7509155985483	33.521	0.81074	34.274	33.992	34.803	0.75225					49	15	5	0	0	0	0.0054362	1	12018	12018		134.3	88.275	1	97977000			18254	8746	13161	13261	17862	17862					-0.040074305529969934
GSDNINVKNF	10	Unmodified	_GSDNINVKNF_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R1	1	554.6749877929688	2	554.275095	1106.53564	-0.51861	-0.00028745	-0.17042	-9.446E-05	-0.68903	-0.00038191	554.2749614394676	61.914	0.97139	61.914	61.432	62.403	0					43	18	3	0	0	0	0.51689	1	22268	22268		38.176	38.176	1	7184700	+		18255	19932	13162	13262	17863	17863					-0.013369369130941777
GSDNINVKNF	10	Unmodified	_GSDNINVKNF_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	554.275095	1106.53564	-1.0812	-0.00059929	-0.36235	-0.00020084	-1.4436	-0.00080013	554.2750185447496	60.962	1.672	61.707	60.801	62.473	0.74504	-0.10341	-0.00013617	NaN	38.176	78	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7045900	+		18256	19932	13162	13262							-0.013369369130941777
GSDPARYEF	9	Unmodified	_GSDPARYEF_					0	0	0		ENSG00000124260|ENST00000370323|MAGEA10	ENSG00000124260|ENST00000370323|MAGEA10	ENSG00000124260|ENST00000370323|MAGEA10	MULTI-MSMS	A375_MHC_IP_R1	1	521.634521484375	2	521.235439	1040.45632	-0.2942	-0.00015335	-0.76815	-0.00040039	-1.0623	-0.00055373	521.2348952736886	42.798	0.65853	42.798	42.436	43.095	0					21	12	3	0	0	0	0.58268	1	14882	14882		15.739	9.0155	1	2654700			18257	3891	13163	13263	17864	17864					-0.06228583867255111
GSDPARYEF	9	Unmodified	_GSDPARYEF_					0	0	0		ENSG00000124260|ENST00000370323|MAGEA10	ENSG00000124260|ENST00000370323|MAGEA10	ENSG00000124260|ENST00000370323|MAGEA10	MULTI-MSMS	A375_MHC_IP_R2	2	521.634765625	2	521.235439	1040.45632	-0.56509	-0.00029455	-1.2801	-0.00066724	-1.8452	-0.00096178	521.2349277947991	42.126	0.61368	42.899	42.553	43.167	0.7724					20	11	3	0	0	0	0.37338	1	15646	15646		26.021	12.978	1	2875700			18258	3891	13163	13263	17865	17865					-0.06228583867255111
GSDPEFARY	9	Unmodified	_GSDPEFARY_					0	0	0		ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	MULTI-MSMS	A375_MHC_IP_R1	1	521.6348876953125	2	521.235439	1040.45632	-0.11605	-6.0488E-05	-0.59857	-0.00031199	-0.71461	-0.00037248	521.235128575495	38.857	0.5077	38.857	38.577	39.085	0					22	9	3	0	0	0	0.024574	1	13204	13204		79.596	43.469	1	17081000			18259	7068	13164	13264	17866	17866					-0.062285838672323734
GSDPEFARY	9	Unmodified	_GSDPEFARY_					0	0	0		ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	MULTI-MSMS	A375_MHC_IP_R2	2	521.6348876953125	2	521.235439	1040.45632	-0.8962	-0.00046713	-0.16358	-8.5265E-05	-1.0598	-0.0005524	521.2352755007505	38.146	0.56368	38.921	38.636	39.2	0.77451					28	10	4	0	0	0	0.04447	1	13981	13981		66.457	35.82	1	14498000			18260	7068	13164	13264	17867	17867					-0.062285838672323734
GSDPMPQPWS	10	Unmodified	_GSDPMPQPWS_					0	0	0			REV__nc|ENSG00000174483|Q8NFJ9-2|BBS1	REV__nc|ENSG00000174483|Q8NFJ9-2|BBS1	MULTI-MSMS	A375_MHC_IP_R1	1	551.7039794921875	2	551.237124	1100.45969	-0.50993	-0.00028109	0.039917	2.2004E-05	-0.47001	-0.00025909	551.2371282065951	31.758	0.55945	31.758	31.465	32.024	0					16	10	2	0	0	0	0.69833	1	10129	10129		13.042	2.2185	1	4536300	+		18261	27369	13165	13265	17868	17868					-0.08651657084897124
GSDPMPQPWS	10	Unmodified	_GSDPMPQPWS_					0	0	0			REV__nc|ENSG00000174483|Q8NFJ9-2|BBS1	REV__nc|ENSG00000174483|Q8NFJ9-2|BBS1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	551.237124	1100.45969	-0.81637	-0.00045001	-0.038409	-2.1172E-05	-0.85478	-0.00047119	551.2371245628185	31.109	0.45814	31.827	31.618	32.077	0.71857	0.034858	-4.4926E-05	NaN	13.042	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6654000	+		18262	27369	13165	13265							-0.08651657084897124
GSDPRSWEY	9	Unmodified	_GSDPRSWEY_					0	0	0		ENSG00000087074|ENST00000200453|PPP1R15A;PPP1R15A|p.E354Gfs*3|1|0.79|ENSG00000087074|chr19:48874291-48874292|-/G|frameshift_variant;nc|ENSG00000087074|O75807-2|PPP1R15A	ENSG00000087074|ENST00000200453|PPP1R15A	ENSG00000087074|ENST00000200453|PPP1R15A	MULTI-MSMS	A375_MHC_IP_R1	1	549.1380615234375	2	548.738345	1095.46214	-0.56781	-0.00031158	1.5567	0.00085424	0.98892	0.00054266	548.7381292293155	47.326	1.4239	47.326	46.647	48.071	0					88	27	4	0	0	0	0.52905	1	16510	16510		18.373	3.7914	1	46958000			18263	1851	13166	13266	17869	17869					-0.08177485355554381
GSDPRSWEY	9	Unmodified	_GSDPRSWEY_					0	0	0		ENSG00000087074|ENST00000200453|PPP1R15A;PPP1R15A|p.E354Gfs*3|1|0.79|ENSG00000087074|chr19:48874291-48874292|-/G|frameshift_variant;nc|ENSG00000087074|O75807-2|PPP1R15A	ENSG00000087074|ENST00000200453|PPP1R15A	ENSG00000087074|ENST00000200453|PPP1R15A	MULTI-MSMS	A375_MHC_IP_R2	2	549.137939453125	2	548.738345	1095.46214	-0.62054	-0.00034051	1.1936	0.00065497	0.57305	0.00031445	548.7379400132277	46.705	1.3222	47.466	46.801	48.123	0.76128					86	25	4	0	0	0	0.012447	3	17385	17367;17385;17407		93.166	57.039	1	44056000			18264	1851	13166	13266	17870;17871;17872	17871					-0.08177485355554381
GSDPYVRMY	9	Oxidation (M)	_GSDPYVRM(Oxidation (M))Y_		GSDPYVRM(1)Y		GSDPYVRM(66)Y	0	0	1		nc|ENSG00000117868|A0FGR8-5|ESYT2;ENST00000435514.3_1_7:158526900-158536411:-|nuORF;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2	nc|ENSG00000117868|A0FGR8-5|ESYT2	nc|ENSG00000117868|A0FGR8-5|ESYT2	MULTI-MSMS	A375_MHC_IP_R1	1	552.6449584960938	2	552.244949	1102.47534	-0.48723	-0.00026907	-0.12784	-7.0598E-05	-0.61507	-0.00033967	552.244822432414	31.642	0.45596	31.642	31.363	31.819	0					20	8	3	0	0	0	0.04447	1	10136	10136		66.457	49.344	1	5791600			18265	3516	13167	13267	17873	17873		180			-0.07179370567814658
GSDPYVRMY	9	Oxidation (M)	_GSDPYVRM(Oxidation (M))Y_		GSDPYVRM(1)Y		GSDPYVRM(64)Y	0	0	1		nc|ENSG00000117868|A0FGR8-5|ESYT2;ENST00000435514.3_1_7:158526900-158536411:-|nuORF;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2	nc|ENSG00000117868|A0FGR8-5|ESYT2	nc|ENSG00000117868|A0FGR8-5|ESYT2	MULTI-MSMS	A375_MHC_IP_R2	2	552.64404296875	2	552.244949	1102.47534	-0.81168	-0.00044825	-0.56468	-0.00031184	-1.3764	-0.00076009	552.2446339258656	30.958	0.40636	31.676	31.517	31.923	0.71857					17	7	3	0	0	0	0.050868	1	10921	10921		63.961	46.848	1	5437900			18266	3516	13167	13267	17874	17874		180			-0.07179370567814658
GSDQNASLY	9	Unmodified	_GSDQNASLY_					0	0	0		nc|ENSG00000124535|Q96S55-4|WRNIP1;nc|ENSG00000124535|Q96S55-3|WRNIP1;nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1	nc|ENSG00000124535|Q96S55-4|WRNIP1	nc|ENSG00000124535|Q96S55-4|WRNIP1	MULTI-SECPEP	A375_MHC_IP_R1	1	478.1114807128906	2	477.711796	953.40904	-0.37468	-0.00017899	-0.023881	-1.1408E-05	-0.39856	-0.0001904	477.7117217674709	37.567	0.51119	37.567	37.301	37.812	0					17	9	2	0	0	0	0.05021	1	12667	12667		69.105	4.8686	1	4615500			18267	3909	13168	13268	17875	17875					-0.06952863138224075
GSDRSSFSHY	10	Unmodified	_GSDRSSFSHY_					0	0	0		ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1;ENST00000510079.2_1_4:79102321-79102666:-|nuORF	ENSG00000142864|ENST00000361219|SERBP1	ENSG00000142864|ENST00000361219|SERBP1	MULTI-MSMS	A375_MHC_IP_R1	1	381.9004821777344	3	381.500227	1141.47885	0.29811	0.00011373	0.069628	2.6563E-05	0.36774	0.00014029	381.5002008390666	19.852	0.3055	19.852	19.674	19.98	0					12	5	3	0	0	0	0.40573	1	5019	5019		33.821	12.022	1	3390400			18268	5334	13169	13269	17876	17876					-0.08622984469593575
GSDSRFAGY	9	Unmodified	_GSDSRFAGY_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1;nc|ENSG00000115524|O75533-2|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-SECPEP	A375_MHC_IP_R1	1	480.61431884765625	2	480.214506	958.414459	-0.40135	-0.00019274	0.21395	0.00010274	-0.18741	-8.9996E-05	480.2146010768676	31.444	0.60917	31.444	31.16	31.769	0					26	11	3	0	0	0	0.27742	1	10060	10060		36.506	16.092	1	6576500			18269	3317	13170	13270	17877	17877					-0.06641139555756581
GSDSRFAGY	9	Unmodified	_GSDSRFAGY_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1;nc|ENSG00000115524|O75533-2|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-SECPEP	A375_MHC_IP_R2	2	480.6141357421875	2	480.214506	958.414459	-0.58839	-0.00028255	0.30514	0.00014653	-0.28325	-0.00013602	480.21451381120534	30.807	0.50417	31.526	31.317	31.821	0.71857					23	9	3	0	0	0	0.042716	1	10847	10847		86.332	51.93	1	6665600			18270	3317	13170	13270	17878	17878					-0.06641139555756581
GSDSVVLYLY	10	Unmodified	_GSDSVVLYLY_					0	0	0			REV__ENSG00000187266|ENST00000222139|EPOR	REV__ENSG00000187266|ENST00000222139|EPOR	MULTI-MSMS	A375_MHC_IP_R1	1	559.7164306640625	2	558.284597	1114.55464	-0.4538	-0.00025335	0.34253	0.00019123	-0.11127	-6.212E-05	558.2846933187172	97.866	1.2697	97.866	97.389	98.659	0					81	24	5	0	0	0	0.40101	1	35887	35887		34.102	3.4659	1	65543000	+		18271	22017	13171	13271	17879	17879					0.0019459965797068435
GSDSVVLYLY	10	Unmodified	_GSDSVVLYLY_					0	0	0			REV__ENSG00000187266|ENST00000222139|EPOR	REV__ENSG00000187266|ENST00000222139|EPOR	MULTI-MSMS	A375_MHC_IP_R2	2	558.6838989257812	2	558.284597	1114.55464	-0.91223	-0.00050929	0.16808	9.3837E-05	-0.74415	-0.00041545	558.2846278200612	97.041	1.2166	97.797	97.368	98.585	0.75586					68	23	4	0	0	0	0.055257	1	36769	36769		74.423	3.2892	1	67312000	+		18272	22017	13171	13271	17880	17880					0.0019459965797068435
GSDVSLTACKV	11	Carbamidomethyl (C)	_GSDVSLTAC(Carbamidomethyl (C))KV_	GSDVSLTAC(1)KV		GSDVSLTAC(170)KV		0	1	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29912792-29913229:+|nuORF;ENST00000494367.1_1_6:29976031-29977313:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-MSMS	A375_MHC_IP_R1	1	569.1845092773438	2	568.784438	1135.55432	-0.54917	-0.00031236	0.26318	0.00014969	-0.28599	-0.00016267	568.7846104197447	39.871	0.35559	39.871	39.694	40.05	0					14	6	3	0	0	0	1.8163E-12	1	13667	13667		169.92	91.774	1	6395800			18273	9539	13172	13272	17881	17881	48				-0.008031433335645488
GSDVSLTACKV	11	Carbamidomethyl (C)	_GSDVSLTAC(Carbamidomethyl (C))KV_	GSDVSLTAC(1)KV		GSDVSLTAC(170)KV		0	1	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29912792-29913229:+|nuORF;ENST00000494367.1_1_6:29976031-29977313:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-MSMS	A375_MHC_IP_R2	2	569.1842041015625	2	568.784438	1135.55432	-0.50871	-0.00028934	-0.34539	-0.00019645	-0.8541	-0.0004858	568.7842785252467	39.114	0.35852	39.888	39.708	40.067	0.77451					16	6	3	0	0	0	1.1292E-12	2	14440	14440;14498		174.48	96.333	1	6915300			18274	9539	13172	13272	17882;17883	17882	48				-0.008031433335645488
GSDVSLTACKV	11	Unmodified	_GSDVSLTACKV_					0	0	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29912792-29913229:+|nuORF;ENST00000494367.1_1_6:29976031-29977313:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-MSMS	A375_MHC_IP_R1	1	540.6734008789062	2	540.273706	1078.53286	-0.51701	-0.00027933	-0.41548	-0.00022447	-0.93249	-0.0005038	540.2737687049754	51.374	1.0141	51.374	50.713	51.728	0					29	19	3	0	0	0	0.094476	1	18211	18211		70.929	41.847	1	3858600			18275	9539	13172	13273	17884	17884					-0.003265283622795323
GSDVSLTACKV	11	Unmodified	_GSDVSLTACKV_					0	0	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29912792-29913229:+|nuORF;ENST00000494367.1_1_6:29976031-29977313:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-MSMS	A375_MHC_IP_R2	2	540.6734619140625	2	540.273706	1078.53286	-0.97185	-0.00052507	0.31419	0.00016975	-0.65766	-0.00035532	540.2737856837979	50.63	0.70716	51.384	51.057	51.765	0.75406					27	13	3	0	0	0	0.1757	1	19009	19009		57.108	39.995	1	5738700			18276	9539	13172	13273	17885	17885					-0.003265283622795323
GSDVVDWLY	9	Unmodified	_GSDVVDWLY_					0	0	0		ENST00000478247.1_1_3:183882805-183888540:+|nuORF;nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3;ENST00000576840.5_1_17:7130280-7131353:-|nuORF;ENSG00000004975|ENST00000005340|DVL2	ENST00000478247.1_1_3:183882805-183888540:+|nuORF;ENSG00000004975|ENST00000005340|DVL2	ENST00000478247.1_1_3:183882805-183888540:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	527.7362060546875	2	527.248015	1052.48148	-1.3221	-0.00069708	3.0111	0.0015876	1.689	0.00089053	527.7519922647328	29.263	0.85518	29.961	29.681	30.537	0.69872					29	16	3	0	0	0	0.5339	1	10224	10224		18.135	2.2878	1	11928000			18277	6466;877	13173	13274	17886	17886					-0.04266529064648239
GSEDGKIHVW	10	Unmodified	_GSEDGKIHVW_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	A375_MHC_IP_R1	1	376.92083740234375	3	376.520851	1126.54072	0.27735	0.00010443	0.11439	4.3069E-05	0.39173	0.0001475	376.5208830659633	40.177	0.40731	40.177	39.948	40.355	0					11	7	2	0	0	0	0.42311	1	13800	13800		22.775	15.738	1	3087900			18278	6778	13174	13275	17887	17887					-0.017486330504880243
GSEDGKIHVW	10	Unmodified	_GSEDGKIHVW_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	A375_MHC_IP_R2	2	376.9208679199219	3	376.520851	1126.54072	0.14739	5.5495E-05	-0.10096	-3.8012E-05	0.046433	1.7483E-05	376.5208125962161	39.397	0.45705	40.172	39.914	40.371	0.77451					18	8	3	0	0	0	0.6502	1	14568	14568		10.899	3.8619	1	3138300			18279	6778	13174	13275	17888	17888					-0.017486330504880243
GSEDGTLRLW	10	Unmodified	_GSEDGTLRLW_					0	0	0		ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP	ENSG00000023734|ENST00000419869|STRAP	ENSG00000023734|ENST00000419869|STRAP	MULTI-SECPEP	A375_MHC_IP_R1	1	567.1128540039062	2	567.28292	1132.55129	-0.34782	-0.00019731	-0.077858	-4.4168E-05	-0.42568	-0.00024148	567.2827594368481	83.245	0.91144	83.245	82.722	83.634	0					53	17	4	0	0	0	0.055108	1	30359	30359		96.936	40.758	1	17783000			18280	1079	13175	13276	17889	17889					-0.009686503960438131
GSEDGTLRLW	10	Unmodified	_GSEDGTLRLW_					0	0	0		ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP	ENSG00000023734|ENST00000419869|STRAP	ENSG00000023734|ENST00000419869|STRAP	MULTI-SECPEP	A375_MHC_IP_R2	2	567.682861328125	2	567.28292	1132.55129	-0.40012	-0.00022698	-0.053915	-3.0585E-05	-0.45404	-0.00025757	567.2827462277438	82.425	0.81096	83.168	82.787	83.598	0.74293					40	15	4	0	0	0	0.038641	1	31280	31280		160.69	81.962	1	14322000			18281	1079	13175	13276	17890	17890					-0.009686503960438131
GSEDGTVRIW	10	Unmodified	_GSEDGTVRIW_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-SECPEP	A375_MHC_IP_R2	2	560.6578369140625	2	560.275095	1118.53564	-0.90983	-0.00050975	3.366	0.0018859	2.4562	0.0013761	560.2749307825028	61.836	0.65393	62.579	62.22	62.874	0.74263					37	12	4	0	0	0	0.021882	1	23404	23404		87.258	21.785	1	5969700			18282	8584	13176	13277	17891	17891					-0.01888936913087491
GSEESFTFQVS	11	Unmodified	_GSEESFTFQVS_					0	0	0		ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	MULTI-MSMS	A375_MHC_IP_R1	1	609.669189453125	2	609.269675	1216.5248	-0.51333	-0.00031276	0.79368	0.00048357	0.28035	0.00017081	609.2698585812495	32.901	0.50581	32.901	32.684	33.19	0					23	9	4	0	0	0	0.66366	1	10668	10668		18.373	1.2602	1	5269000			18283	7620	13177	13278	17892	17892					-0.07480384078053248
GSEESFTFQVS	11	Unmodified	_GSEESFTFQVS_					0	0	0		ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	MULTI-MATCH	A375_MHC_IP_R2	2		2	609.269675	1216.5248	-0.47868	-0.00029164	0.54882	0.00033438	0.070138	4.2733E-05	609.2696449153922	32.224	0.40747	32.961	32.755	33.162	0.73691	0.030265	-0.00019982	NaN	18.373	22	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6903800			18284	7620	13177	13278							-0.07480384078053248
GSEKLYRVPG	10	Unmodified	_GSEKLYRVPG_					0	0	0		nc|ENSG00000047648|O43182-4|ARHGAP6;ENSG00000047648|ENST00000337414|ARHGAP6;nc|ENSG00000047648|O43182-5|ARHGAP6;nc|ENSG00000047648|O43182-2|ARHGAP6	nc|ENSG00000047648|O43182-4|ARHGAP6	nc|ENSG00000047648|O43182-4|ARHGAP6	MULTI-MSMS	A375_MHC_IP_R1	1	370.26116943359375	3	369.204862	1104.59276	0.38088	0.00014062	0.027677	1.0218E-05	0.40856	0.00015084	369.20482663435786	35.076	1.0714	35.076	34.861	35.932	0					41	20	4	0	0	0	0.70651	1	11719	11719		5.4027	2.0831	1	16736000			18285	1206	13178	13279	17893	17893					0.04464530363247832
GSELIQGLGY	10	Unmodified	_GSELIQGLGY_					0	0	0		ENSG00000135048|ENST00000377044|CEMIP2;nc|ENSG00000135048|Q9UHN6-2|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	519.169189453125	2	518.769114	1035.52368	-0.4243	-0.00022011	-0.90026	-0.00046703	-1.3246	-0.00068714	518.7686496083179	97.12	0.96053	97.12	96.68	97.641	0					28	17	2	0	0	0	0.12137	1	35667	35667		69.105	25.333	1	5357600			18286	4638	13179	13280	17894	17894					0.007334463437246086
GSEPASLSY	9	Unmodified	_GSEPASLSY_					0	0	0		ENSG00000107371|ENST00000327304|EXOSC3;nc|ENSG00000107371|Q9NQT5-2|EXOSC3;ENST00000540557.1_1_9:37727926-37784024:-|nuORF;ENST00000465860.5_1_9:37781981-37784738:-|nuORF	ENSG00000107371|ENST00000327304|EXOSC3	ENSG00000107371|ENST00000327304|EXOSC3	MULTI-SECPEP	A375_MHC_IP_R1	1	910.756103515625	1	910.415253	909.407977	0.22996	0.00020936	-0.46016	-0.00041894	-0.2302	-0.00020958	910.414716986389	48.332	1.0128	48.332	47.92	48.933	0					54	19	4	0	0	0	0.010923	1	17075	17075		115.69	37.543	1	44815000			18287	2737	13180	13281	17895	17895					-0.05035077507125152
GSEPASLSY	9	Unmodified	_GSEPASLSY_					0	0	0		ENSG00000107371|ENST00000327304|EXOSC3;nc|ENSG00000107371|Q9NQT5-2|EXOSC3;ENST00000540557.1_1_9:37727926-37784024:-|nuORF;ENST00000465860.5_1_9:37781981-37784738:-|nuORF	ENSG00000107371|ENST00000327304|EXOSC3	ENSG00000107371|ENST00000327304|EXOSC3	MULTI-SECPEP	A375_MHC_IP_R2	2	910.7554321289062	1	910.415253	909.407977	-0.24092	-0.00021934	-0.43751	-0.00039831	-0.67843	-0.00061765	910.414757277743	47.697	0.86069	48.459	48.022	48.883	0.76128					46	16	4	0	0	0	0.010923	1	17837	17837		115.69	37.543	1	45603000			18288	2737	13180	13281	17896	17896					-0.05035077507125152
GSEVDCYYY	9	Unmodified	_GSEVDCYYY_					0	0	0			REV__ENSG00000164252|ENST00000312916|AGGF1	REV__ENSG00000164252|ENST00000312916|AGGF1	MULTI-MSMS	A375_MHC_IP_R1	1	550.1074829101562	2	549.707865	1097.40118	-0.53592	-0.0002946	0.098947	5.4392E-05	-0.43697	-0.00024021	549.7081029054921	100	0.65713	100	99.723	100.38	0					16	12	2	0	0	0	0.3054	1	36732	36732		30.225	1.738	1	3340000	+		18289	20471	13181	13282	17897	17897					-0.14362758450033652
GSEVDCYYY	9	Unmodified	_GSEVDCYYY_					0	0	0			REV__ENSG00000164252|ENST00000312916|AGGF1	REV__ENSG00000164252|ENST00000312916|AGGF1	MULTI-MSMS	A375_MHC_IP_R2	2	550.1079711914062	2	549.707865	1097.40118	-0.58087	-0.00031931	-0.092175	-5.0669E-05	-0.67304	-0.00036998	549.7080854699445	99.298	0.76276	100.06	99.758	100.52	0.75977					26	14	3	0	0	0	0.43185	1	37682	37682		23.148	1.4018	1	2050800	+		18290	20471	13181	13282	17898	17898					-0.14362758450033652
GSEVDCYYY	9	Unmodified	_GSEVDCYYY_					0	0	0			REV__ENSG00000164252|ENST00000312916|AGGF1	REV__ENSG00000164252|ENST00000312916|AGGF1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	549.707865	1097.40118	-0.53592	-0.0002946	0.098947	5.4392E-05	-0.43697	-0.00024021	549.7081029054921	100	0.65713	100	99.723	100.38	0	-0.028567	9.6981E-05	NaN	30.225	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3340000	+		18291	20471	13181	13282							-0.14362758450033652
GSEYLKLGY	9	Unmodified	_GSEYLKLGY_					0	0	0		ENST00000462641.1_1_22:36907036-36908721:-|nuORF;nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D	ENST00000462641.1_1_22:36907036-36908721:-|nuORF	ENST00000462641.1_1_22:36907036-36908721:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	515.1942749023438	2	515.266207	1028.51786	-0.47257	-0.0002435	-0.091236	-4.7011E-05	-0.56381	-0.00029051	515.2660644362251	63.352	0.66639	63.352	63.018	63.684	0					26	12	4	0	0	0	0.0094788	1	22910	22910		107.19	81.788	1	4864200			18292	2166	13182	13283	17899	17899					0.004743478320506256
GSEYLKLGY	9	Unmodified	_GSEYLKLGY_					0	0	0		ENST00000462641.1_1_22:36907036-36908721:-|nuORF;nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D	ENST00000462641.1_1_22:36907036-36908721:-|nuORF	ENST00000462641.1_1_22:36907036-36908721:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	515.6654052734375	2	515.266207	1028.51786	-0.81463	-0.00041975	-0.21154	-0.000109	-1.0262	-0.00052875	515.2660423890648	62.629	0.6571	63.371	63.028	63.685	0.74263					19	12	2	0	0	0	0.010171	1	23721	23721		96.111	69.227	1	3472900			18293	2166	13182	13283	17900	17900					0.004743478320506256
GSFGGIRLY	9	Unmodified	_GSFGGIRLY_					0	0	0		nc|ENSG00000136813|Q5VYK3|ECPAS;ENSG00000136813|ENST00000684092|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-MSMS	A375_MHC_IP_R2	2	485.27349853515625	2	485.261259	968.507966	-0.49703	-0.00024119	-0.30447	-0.00014775	-0.8015	-0.00038894	485.2611463197507	79.196	0.50592	79.941	79.693	80.199	0.74474					15	9	2	0	0	0	0.19747	1	30072	30072		38.176	15.439	1	1439700			18294	4820	13183	13284	17901	17901					0.022452046173043527
GSFGKVFLV	9	Unmodified	_GSFGKVFLV_					0	0	0		nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;ENST00000525582.1_1_1:26873450-26873871:+|nuORF;ENST00000524436.5_1_1:26856411-26877988:+|nuORF;ENST00000530607.1_1_1:26872355-26877988:+|nuORF;nc|ENSG00000072133|Q9UK32-2|RPS6KA6;ENSG00000072133|ENST00000262752|RPS6KA6;ENST00000474266.1_1_X:20222119-20236956:-|nuORF;ENSG00000177189|ENST00000379565|RPS6KA3	nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000177189|ENST00000379565|RPS6KA3	nc|ENSG00000117676|Q15418-4|RPS6KA1	MULTI-MSMS	A375_MHC_IP_R1	1	477.6761779785156	2	477.276378	952.538203	-0.69628	-0.00033232	-0.10608	-5.0628E-05	-0.80235	-0.00038294	477.27650269722506	91.037	0.70975	91.037	90.794	91.503	0					19	13	3	0	0	0	0.31062	1	33462	33462		29.841	10.402	1	1937300			18295	3506;8067	13184	13285	17902	17902					0.06003563282513369
GSFGKVFLV	9	Unmodified	_GSFGKVFLV_					0	0	0		nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;ENST00000525582.1_1_1:26873450-26873871:+|nuORF;ENST00000524436.5_1_1:26856411-26877988:+|nuORF;ENST00000530607.1_1_1:26872355-26877988:+|nuORF;nc|ENSG00000072133|Q9UK32-2|RPS6KA6;ENSG00000072133|ENST00000262752|RPS6KA6;ENST00000474266.1_1_X:20222119-20236956:-|nuORF;ENSG00000177189|ENST00000379565|RPS6KA3	nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000177189|ENST00000379565|RPS6KA3	nc|ENSG00000117676|Q15418-4|RPS6KA1	MULTI-MSMS	A375_MHC_IP_R2	2	477.6761474609375	2	477.276378	952.538203	-0.44092	-0.00021044	-0.18885	-9.0135E-05	-0.62978	-0.00030058	477.27630539191506	90.094	0.51085	90.826	90.545	91.056	0.7318					16	9	2	0	0	0	0.2487	1	34277	34277		34.402	6.2285	1	2323400			18296	3506;8067	13184	13285	17903	17903					0.06003563282513369
GSFQEQINW	9	Unmodified	_GSFQEQINW_					0	0	0		ENST00000475700.1_1_1:112303127-112303484:+|nuORF;DDX20|p.S687Lfs*33|1|0.35|ENSG00000064703|chr1:111766483-111766483|T/-|frameshift_variant;ENSG00000064703|ENST00000369702|DDX20	ENST00000475700.1_1_1:112303127-112303484:+|nuORF	ENST00000475700.1_1_1:112303127-112303484:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	555.1567993164062	2	554.756538	1107.49852	-0.67336	-0.00037355	1.1872	0.00065859	0.51382	0.00028504	554.7566870316401	90.298	0.7097	91.029	90.751	91.46	0.7318					21	13	2	0	0	0	0.012843	1	34358	34358		92.653	3.2526	1	3087400			18297	724	13185	13286	17904	17904					-0.050926084588581944
GSFQGNFGW	9	Unmodified	_GSFQGNFGW_					0	0	0		nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2;ITSN2|p.K1104Rfs*9|1|0.18|ENSG00000198399|chr2:24246872-24246873|TC/-|frameshift_variant;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	MULTI-SECPEP	A375_MHC_IP_R1	1	500.6196594238281	2	500.219591	998.42463	-0.37883	-0.0001895	-0.98476	-0.0004926	-1.3636	-0.0006821	500.2195357724737	99.992	0.50432	99.992	99.673	100.18	0					14	9	2	0	0	0	0.50702	1	36736	36736		25.399	9.5521	1	1370100			18298	9265	13186	13287	17905	17905					-0.07464531830521537
GSFRELAF	8	Unmodified	_GSFRELAF_					0	0	0		ENST00000346329.7_1_11:70281557-70281851:+|nuORF	ENST00000346329.7_1_11:70281557-70281851:+|nuORF	ENST00000346329.7_1_11:70281557-70281851:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	464.14044189453125	2	463.74016	925.465767	-0.21287	-9.8715E-05	0.7359	0.00034127	0.52303	0.00024255	463.74043349990643	59.97	0.45827	59.97	59.752	60.21	0					14	8	2	0	0	0	0.94587	1	21664	21664		14.838	0	1	2311700			18299	10911	13187	13288	17906	17906					5.229208954915521E-05
GSFSFMEF	8	Unmodified	_GSFSFMEF_					0	0	0			REV__VNN2|p.L431F|1|0.2|ENSG00000112303|chr6:132749775-132749775|G/A|missense_variant	REV__VNN2|p.L431F|1|0.2|ENSG00000112303|chr6:132749775-132749775|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	476.1742858886719	2	476.199479	950.384405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.112	1	27.112	26.612	27.612	0								0	0	0	0.16876	1	8174	8174		19.439	2.4967	1		+		18300	28982	13188	13289	17907	17907					-0.09277214545306833
GSFSGVRKL	9	Unmodified	_GSFSGVRKL_					0	0	0		ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	MULTI-SECPEP	A375_MHC_IP_R1	1	476.1742858886719	2	475.774534	949.534515	-0.69394	-0.00033016	-0.052866	-2.5152E-05	-0.74681	-0.00035531	475.7745431323811	27.053	0.5029	27.053	26.878	27.381	0					15	9	2	0	0	0	0.0575	1	8174	8174		86.332	40.311	1	5645500			18301	6056	13189	13290	17908	17908					0.057728935086515776
GSFVTPDRRF	10	Unmodified	_GSFVTPDRRF_					0	0	0		ENSG00000197579|ENST00000360538|TOPORS;nc|ENSG00000197579|Q9NS56-2|TOPORS;TOPORS|p.D417Mfs*23|1|0.46|ENSG00000197579|chr9:32543276-32543276|C/-|frameshift_variant	ENSG00000197579|ENST00000360538|TOPORS	ENSG00000197579|ENST00000360538|TOPORS	MULTI-MSMS	A375_MHC_IP_R1	1	394.9402770996094	3	394.540245	1180.59891	0.00073787	2.9112E-07	-0.51914	-0.00020482	-0.5184	-0.00020453	394.54008366351576	40.809	0.50452	40.809	40.609	41.114	0					14	9	2	0	0	0	0.21149	1	14074	14074		48.073	30.21	1	2899700			18302	9172	13190	13291	17909	17909					0.015830485948072237
GSFVTPDRRF	10	Unmodified	_GSFVTPDRRF_					0	0	0		ENSG00000197579|ENST00000360538|TOPORS;nc|ENSG00000197579|Q9NS56-2|TOPORS;TOPORS|p.D417Mfs*23|1|0.46|ENSG00000197579|chr9:32543276-32543276|C/-|frameshift_variant	ENSG00000197579|ENST00000360538|TOPORS	ENSG00000197579|ENST00000360538|TOPORS	MULTI-SECPEP	A375_MHC_IP_R2	2	394.93994140625	3	394.540245	1180.59891	-0.20689	-8.1625E-05	-0.14699	-5.7992E-05	-0.35387	-0.00013962	394.54017800351886	40.079	0.45559	40.854	40.575	41.031	0.77451					13	8	2	0	0	0	0.75488	1	14835	14835		25.997	17.553	1	3922800			18303	9172	13190	13291	17910	17910					0.015830485948072237
GSGCGKCDC	9	Unmodified	_GSGCGKCDC_					0	0	0		ENSG00000187498|ENST00000375820|COL4A1;nc|ENSG00000187498|P02462-2|COL4A1	ENSG00000187498|ENST00000375820|COL4A1	ENSG00000187498|ENST00000375820|COL4A1	MULTI-MSMS	A375_MHC_IP_R1	1	829.6654663085938	1	829.26372	828.256444	-0.55693	-0.00046184	-1.1328	-0.0009394	-1.6897	-0.0014012	829.2659819293182	0.65338	0.97262	0.65338	0.18494	1.1576	0					359	144	4	0	0	0	0.77827	4	126	126;180;211;242		0	0	1	237300			18304	8827	13191	13292	17911;17912;17913;17914	17911					-0.16455421402520187
GSGCGKCDC	9	Unmodified	_GSGCGKCDC_					0	0	0		ENSG00000187498|ENST00000375820|COL4A1;nc|ENSG00000187498|P02462-2|COL4A1	ENSG00000187498|ENST00000375820|COL4A1	ENSG00000187498|ENST00000375820|COL4A1	MULTI-MSMS	A375_MHC_IP_R1	1	829.6654052734375	1	829.26372	828.256444	-0.55715	-0.00046203	-0.0057295	-4.7513E-06	-0.56288	-0.00046678	829.2662221547052	3.6946	1.2339	3.6946	3.0454	4.2793	0					327	183	3	0	0	0	0.77827	4	714	714;819;828;831		0	0	1	258530			18305	8827	13191	13292	17915;17916;17917;17918	17915					-0.16455421402520187
GSGCGKCDC	9	Unmodified	_GSGCGKCDC_					0	0	0		ENSG00000187498|ENST00000375820|COL4A1;nc|ENSG00000187498|P02462-2|COL4A1	ENSG00000187498|ENST00000375820|COL4A1	ENSG00000187498|ENST00000375820|COL4A1	MULTI-MSMS	A375_MHC_IP_R1	1	830.6671752929688	1	829.26372	828.256444	-0.55718	-0.00046205	-0.13104	-0.00010867	-0.68822	-0.00057071	829.2660773877536	4.6971	0.67434	4.6971	4.169	4.8434	0					245	99	3	0	0	0	0.77827	3	969	969;1061;1085		0	0	1	271730			18306	8827	13191	13292	17919;17920;17921	17919					-0.16455421402520187
GSGCGKCDC	9	Unmodified	_GSGCGKCDC_					0	0	0		ENSG00000187498|ENST00000375820|COL4A1;nc|ENSG00000187498|P02462-2|COL4A1	ENSG00000187498|ENST00000375820|COL4A1	ENSG00000187498|ENST00000375820|COL4A1	MULTI-MSMS	A375_MHC_IP_R1	1	830.66650390625	1	829.26372	828.256444	-0.55717	-0.00046204	-0.010976	-9.1019E-06	-0.56815	-0.00047115	829.2661178618024	6.6214	0.91197	6.6214	5.9246	6.8366	0					261	137	3	0	0	0	0.77827	2	1465	1465;1522		0	0	1	264040			18307	8827	13191	13292	17922;17923	17922					-0.16455421402520187
GSGCGKCDC	9	Unmodified	_GSGCGKCDC_					0	0	0		ENSG00000187498|ENST00000375820|COL4A1;nc|ENSG00000187498|P02462-2|COL4A1	ENSG00000187498|ENST00000375820|COL4A1	ENSG00000187498|ENST00000375820|COL4A1	MULTI-MSMS	A375_MHC_IP_R1	1	829.6654052734375	1	829.26372	828.256444	-0.55718	-0.00046205	-0.27458	-0.0002277	-0.83175	-0.00068974	829.2659016371244	11.074	0.62008	11.074	10.748	11.368	0					230	94	3	0	0	0	0.77827	2	2577	2577;2589		0	0	1	235480			18308	8827	13191	13292	17924;17925	17924					-0.16455421402520187
GSGCGKCDC	9	Unmodified	_GSGCGKCDC_					0	0	0		ENSG00000187498|ENST00000375820|COL4A1;nc|ENSG00000187498|P02462-2|COL4A1	ENSG00000187498|ENST00000375820|COL4A1	ENSG00000187498|ENST00000375820|COL4A1	MULTI-MSMS	A375_MHC_IP_R1	1	830.6664428710938	1	829.26372	828.256444	-0.55689	-0.00046181	-1.2339	-0.0010232	-1.7908	-0.001485	829.2661857376839	13.651	0.84895	13.651	13.419	14.268	0					299	127	4	0	0	0	0.77827	3	3118	3118;3142;3158		0	0	1	245710			18309	8827	13191	13292	17926;17927;17928	17926					-0.16455421402520187
GSGCGKCDC	9	Unmodified	_GSGCGKCDC_					0	0	0		ENSG00000187498|ENST00000375820|COL4A1;nc|ENSG00000187498|P02462-2|COL4A1	ENSG00000187498|ENST00000375820|COL4A1	ENSG00000187498|ENST00000375820|COL4A1	MULTI-MSMS	A375_MHC_IP_R1	1	829.6655883789062	1	829.26372	828.256444	-0.5568	-0.00046173	-1.4618	-0.0012122	-2.0186	-0.0016739	829.2661790040693	14.402	0.24739	14.402	14.268	14.516	0					92	36	4	0	0	0	0.77827	1	3277	3277		0	0	1	216720			18310	8827	13191	13292	17929	17929					-0.16455421402520187
GSGCGKCDC	9	Unmodified	_GSGCGKCDC_					0	0	0		ENSG00000187498|ENST00000375820|COL4A1;nc|ENSG00000187498|P02462-2|COL4A1	ENSG00000187498|ENST00000375820|COL4A1	ENSG00000187498|ENST00000375820|COL4A1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	829.26372	828.256444	-1.0392	-0.0008618	0.46057	0.00038194	-0.57866	-0.00047986	829.2664838235561	6.4058	0.30754	6.8209	6.6933	7.0008	0.4151	0.099749	0.00028661	NaN	0	72	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223890			18311	8827	13191	13292							-0.16455421402520187
GSGCGKCDC	9	Unmodified	_GSGCGKCDC_					0	0	0		ENSG00000187498|ENST00000375820|COL4A1;nc|ENSG00000187498|P02462-2|COL4A1	ENSG00000187498|ENST00000375820|COL4A1	ENSG00000187498|ENST00000375820|COL4A1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	829.26372	828.256444	-1.0391	-0.00086172	0.51607	0.00042795	-0.52308	-0.00043377	829.2664750238057	4.257	0.49938	4.6929	4.4316	4.931	0.43585	-0.00212	0.00030751	NaN	0	112	61	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268420			18312	8827	13191	13292							-0.16455421402520187
GSGCGKGG	8	Unmodified	_GSGCGKGG_					0	0	0			REV__nc|ENSG00000130731|Q96S19-2|METTL26	REV__nc|ENSG00000130731|Q96S19-2|METTL26	MULTI-MSMS	A375_MHC_IP_R2	2	623.242431640625	1	622.261336	621.254059	-0.75485	-0.00046972	3.2788	0.0020403	2.524	0.0015706	622.2625682375437	72.973	0.30553	73.709	73.581	73.887	0.73541					7	5	2	0	0	0	0.77842	1	27691	27691		0.69038	0	1	732540	+		18313	24874	13192	13293	17930	17930					-0.07171765753639647
GSGGKSWQQAV	11	Unmodified	_GSGGKSWQQAV_					0	0	0		ENST00000573548.1_1_17:78263625-78265730:+|nuORF	ENST00000573548.1_1_17:78263625-78265730:+|nuORF	ENST00000573548.1_1_17:78263625-78265730:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	553.1748657226562	2	552.775262	1103.53597	-0.66474	-0.00036745	0.52393	0.00028962	-0.14081	-7.7837E-05	552.7752684016768	47.913	0.65737	48.675	48.326	48.984	0.76128					21	12	2	0	0	0	0.97182	1	18001	18001		18.373	6.8784	1	3290000			18314	13627	13193	13294	17931	17931					-0.011655171932488884
GSGGNNDG	8	Unmodified	_GSGGNNDG_					0	0	0		ENST00000512630.5_1_4:143007384-143094853:-|nuORF;INPP4B|p.T565Nfs*14|1|0.37|ENSG00000109452|chr4:142145866-142145867|-/T|frameshift_variant;INPP4B|p.W576Cfs*9|1|0.35|ENSG00000109452|chr4:142124744-142124753|CTGTTCATAC/-|frameshift_variant;ENSG00000109452|ENST00000262992|INPP4B	ENST00000512630.5_1_4:143007384-143094853:-|nuORF	ENST00000512630.5_1_4:143007384-143094853:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	677.79443359375	1	677.248522	676.241246	-0.47746	-0.00032336	-2.1582	-0.0014616	-2.6357	-0.001785	677.2465966354367	143.18	0.20171	143.21	143.09	143.29	0.030731					5	3	2	0	0	0	0.972	1	55950	55950		0.6015	0.076735	1	229230			18315	2869	13194	13295	17932	17932					-0.10982505612173554
GSGLHGWAF	9	Unmodified	_GSGLHGWAF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.R415Efs*11|1|0.09|ENSG00000167658|chr19:3980617-3980617|G/-|frameshift_variant;EEF2|p.V416Lfs*18|1|0.09|ENSG00000167658|chr19:3980618-3980619|-/AGCAATCCGCCTGCCTCAGCCTC|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	A375_MHC_IP_R1	1	466.6244201660156	2	466.224677	930.434801	-0.31293	-0.0001459	-0.36077	-0.0001682	-0.6737	-0.0003141	466.22463740718564	76.314	0.65702	76.314	76.067	76.724	0					27	12	3	0	0	0	0.060021	1	27810	27810		60.39	34.048	1	4561100			18316	7207	13195	13296	17933	17933					-0.033199241053011974
GSGLHGWAF	9	Unmodified	_GSGLHGWAF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.R415Efs*11|1|0.09|ENSG00000167658|chr19:3980617-3980617|G/-|frameshift_variant;EEF2|p.V416Lfs*18|1|0.09|ENSG00000167658|chr19:3980618-3980619|-/AGCAATCCGCCTGCCTCAGCCTC|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	A375_MHC_IP_R2	2	466.6242370605469	2	466.224677	930.434801	-0.66716	-0.00031105	-0.00072189	-3.3656E-07	-0.66789	-0.00031139	466.2246745816902	75.481	0.66237	76.221	75.825	76.487	0.74052					27	12	3	0	0	0	0.060021	1	28622	28622		60.39	34.048	1	4397900			18317	7207	13195	13296	17934	17934					-0.033199241053011974
GSGLSGRLW	9	Unmodified	_GSGLSGRLW_					0	0	0			REV__ENST00000560323.1_1_15:48607144-48623929:-|nuORF	REV__ENST00000560323.1_1_15:48607144-48623929:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	467.1509094238281	2	466.751059	931.487565	-0.48565	-0.00022668	0.68711	0.00032071	0.20146	9.403E-05	466.7512351102424	68.387	0.50758	68.387	68.159	68.666	0					17	9	2	0	0	0	0.34064	1	24816	24816		27.629	5.8822	1	1577800	+		18318	26165	13196	13297	17935	17935					0.019080339575111793
GSGLSGRLW	9	Unmodified	_GSGLSGRLW_					0	0	0			REV__ENST00000560323.1_1_15:48607144-48623929:-|nuORF	REV__ENST00000560323.1_1_15:48607144-48623929:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	467.15069580078125	2	466.751059	931.487565	-0.63181	-0.0002949	0.35748	0.00016685	-0.27433	-0.00012805	466.75107679799186	67.444	0.50974	68.18	67.951	68.461	0.73631					12	9	2	0	0	0	0.17338	1	25566	25566		39.95	13.066	1	1475500	+		18319	26165	13196	13297	17936	17936					0.019080339575111793
GSGLSGRLW	9	Unmodified	_GSGLSGRLW_					0	0	0			REV__ENST00000560323.1_1_15:48607144-48623929:-|nuORF	REV__ENST00000560323.1_1_15:48607144-48623929:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	466.751059	931.487565	-0.48565	-0.00022668	0.68711	0.00032071	0.20146	9.403E-05	466.7512351102424	68.387	0.50758	68.387	68.159	68.666	0	0.1035	4.9137E-05	NaN	39.95	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1577800	+		18320	26165	13196	13297							0.019080339575111793
GSGLSGRLW	9	Unmodified	_GSGLSGRLW_					0	0	0			REV__ENST00000560323.1_1_15:48607144-48623929:-|nuORF	REV__ENST00000560323.1_1_15:48607144-48623929:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	466.751059	931.487565	-0.63181	-0.0002949	0.35748	0.00016685	-0.27433	-0.00012805	466.75107679799186	67.444	0.50974	68.18	67.951	68.461	0.73631	-0.1035	-0.00025857	NaN	39.95	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1475500	+		18321	26165	13196	13297							0.019080339575111793
GSGSLDWRQL	10	Unmodified	_GSGSLDWRQL_					0	0	0			REV__ENSG00000196227|ENST00000360816|FAM217B	REV__ENSG00000196227|ENST00000360816|FAM217B	MULTI-SECPEP	A375_MHC_IP_R2	2	560.1824951171875	2	559.783087	1117.55162	-0.88977	-0.00049808	-0.091213	-5.1059E-05	-0.98099	-0.00054914	559.7830043573808	62.07	0.60807	62.813	62.471	63.079	0.74263					18	11	2	0	0	0	0.70528	1	23531	23531		20.415	20.415	1	2065300	+		18322	22173	13197	13298	17937	17937					-0.0024523067620521033
GSGWGFCC	8	Unmodified	_GSGWGFCC_					0	0	0		ENST00000369774.8_3_10:105360489-105360906:-|nuORF	ENST00000369774.8_3_10:105360489-105360906:-|nuORF	ENST00000369774.8_3_10:105360489-105360906:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	815.6766967773438	1	816.280357	815.27308	-0.74435	-0.0006076	-0.18541	-0.00015134	-0.92976	-0.00075894	816.2802147503223	144.79	0.14549	144.79	144.72	144.87	0					6	2	3	0	0	0	0.972	1	55538	55538		0	0	1	1680500			18323	11139	13198	13299	17938	17938					-0.14194552454250697
GSGYSPGG	8	Unmodified	_GSGYSPGG_					0	0	0		ENSG00000182263|ENST00000333129|FIGN	ENSG00000182263|ENST00000333129|FIGN	ENSG00000182263|ENST00000333129|FIGN	MULTI-SECPEP	A375_MHC_IP_R2	2	681.0753173828125	1	681.283845	680.276569	-0.59327	-0.00040419	2.3413	0.0015951	1.748	0.0011909	681.2872532607438	105.1	0.151	105.86	105.77	105.92	0.76308					4	2	2	0	0	0	0.972	1	39766	39766		0	0	1	818580			18324	8395	13199	13300	17939	17939					-0.07635843084369753
GSHSMRYFF	9	Unmodified	_GSHSMRYFF_					0	0	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-SECPEP	A375_MHC_IP_R1	1	378.2396240234375	3	377.839526	1130.49675	0.32524	0.00012289	0.063129	2.3852E-05	0.38837	0.00014674	377.83942820458304	54.898	0.55771	54.898	54.619	55.177	0					25	10	3	0	0	0	0.34746	1	19608	19608		35.612	15.159	1	4954300			18325	9539	13200	13301	17940	17940					-0.0632794074845151
GSHSMRYFF	9	Unmodified	_GSHSMRYFF_					0	0	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-SECPEP	A375_MHC_IP_R2	2	378.23944091796875	3	377.839526	1130.49675	-0.22864	-8.6388E-05	0.107	4.0427E-05	-0.12164	-4.5961E-05	377.8394807027187	53.944	0.7151	54.695	54.353	55.068	0.75105					28	13	3	0	0	0	0.34746	1	20354	20354		35.612	20.774	1	4946000			18326	9539	13200	13301	17941	17941					-0.0632794074845151
GSHSMRYFFT	10	Unmodified	_GSHSMRYFFT_					0	0	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-MSMS	A375_MHC_IP_R2	2	411.9219970703125	3	411.522086	1231.54443	-0.3896	-0.00016033	0.1767	7.2717E-05	-0.2129	-8.7613E-05	411.52206654454477	52.374	0.45345	53.126	52.831	53.285	0.75225					19	8	3	0	0	0	0.61179	1	19728	19728		19.987	7.1309	1	3424000			18327	9539	13201	13302	17942	17942					-0.06208286548280739
GSHSMRYFFTS	11	Unmodified	_GSHSMRYFFTS_					0	0	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-MSMS	A375_MHC_IP_R1	1	440.9327087402344	3	440.532762	1318.57646	-0.19859	-8.7485E-05	-0.38389	-0.00016912	-0.58248	-0.0002566	440.53254458976073	52.566	0.51013	52.566	52.336	52.847	0					16	9	2	0	0	0	0.65749	1	18734	18734		18.853	1.8042	1	2354900			18328	9539	13202	13303	17943	17943					-0.07008918865130909
GSHSMRYFFTS	11	Unmodified	_GSHSMRYFFTS_					0	0	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-MSMS	A375_MHC_IP_R2	2	440.9323425292969	3	440.532762	1318.57646	-0.60604	-0.00026698	0.089254	3.9319E-05	-0.51679	-0.00022766	440.5326392987088	51.742	0.50961	52.494	52.27	52.78	0.75225					15	9	2	0	0	0	0.63742	1	19492	19492		20.411	10.647	1	2375500			18329	9539	13202	13303	17944	17944					-0.07008918865130909
GSHSMRYFY	9	Unmodified	_GSHSMRYFY_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-SECPEP	A375_MHC_IP_R2	2	383.57122802734375	3	383.171164	1146.49166	-0.63435	-0.00024306	-0.013132	-5.0319E-06	-0.64748	-0.0002481	383.17155684909096	36.775	0.60964	37.546	37.157	37.767	0.7709					29	11	4	0	0	0	0.74875	1	13412	13412		10.899	2.9888	1	7869000			18330	9742	13203	13304	17945	17945					-0.07572244611083079
GSIEADFRAW	10	Unmodified	_GSIEADFRAW_					0	0	0		ENSG00000198874|ENST00000359626|TYW1;nc|ENSG00000198874|Q9NV66-2|TYW1	ENSG00000198874|ENST00000359626|TYW1	ENSG00000198874|ENST00000359626|TYW1	MULTI-SECPEP	A375_MHC_IP_R1	1	576.6771240234375	2	576.277638	1150.54072	-0.38185	-0.00022005	-0.14253	-8.2135E-05	-0.52438	-0.00030219	576.2773982577959	86.096	0.70811	86.096	85.87	86.578	0					20	13	2	0	0	0	0.65827	1	31587	31587		39.213	17.676	1	4020200			18331	9356	13204	13305	17946	17946					-0.028526330504973885
GSIEADFRAW	10	Unmodified	_GSIEADFRAW_					0	0	0		ENSG00000198874|ENST00000359626|TYW1;nc|ENSG00000198874|Q9NV66-2|TYW1	ENSG00000198874|ENST00000359626|TYW1	ENSG00000198874|ENST00000359626|TYW1	MULTI-SECPEP	A375_MHC_IP_R2	2	576.6768798828125	2	576.277638	1150.54072	-0.0082182	-4.7359E-06	-0.70946	-0.00040884	-0.71767	-0.00041358	576.277115305275	85.496	0.66132	86.232	85.933	86.595	0.73602					22	12	3	0	0	0	0.36543	1	32485	32485		49.527	18.891	1	3153200			18332	9356	13204	13305	17947	17947					-0.028526330504973885
GSIELMGTIW	10	Unmodified	_GSIELMGTIW_					0	0	0			REV__ENST00000373122.8_1_6:41126504-41129123:-|nuORF	REV__ENST00000373122.8_1_6:41126504-41129123:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	554.1795043945312	2	553.781167	1105.54778	-0.6692	-0.00037059	-2.6651	-0.0014759	-3.3343	-0.0018465	553.779520864474	134.53	0.25403	134.67	134.55	134.8	0.13901					6	4	2	0	0	0	0.91556	1	52946	52946		14.838	0	1	2370600	+		18333	24083	13205	13306	17948	17948					-0.0007703649425820913
GSIELMGTIW	10	Unmodified	_GSIELMGTIW_					0	0	0			REV__ENST00000373122.8_1_6:41126504-41129123:-|nuORF	REV__ENST00000373122.8_1_6:41126504-41129123:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	553.781167	1105.54778	-0.82639	-0.00045764	-3.1108	-0.0017227	-3.9372	-0.0021803	553.7795091443398	134.65	0.15256	134.65	134.57	134.73	0	-0.011497	-3.6822E-05	NaN	14.838	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1923400	+		18334	24083	13205	13306							-0.0007703649425820913
GSIGFHVW	8	Unmodified	_GSIGFHVW_					0	0	0			REV__ENST00000607710.1_1_8:123792649-123793066:-|nuORF	REV__ENST00000607710.1_1_8:123792649-123793066:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	451.12646484375	2	451.729595	901.444637	-0.066102	-2.986E-05	-0.18672	-8.4345E-05	-0.25282	-0.00011421	451.72936547976616	43.815	0.4529	44.584	44.38	44.833	0.76909					13	8	2	0	0	0	0.90224	1	16306	16306		26.341	11.503	1	1622100	+		18335	26551	13206	13307	17949	17949					-0.010027360999174562
GSILVDEY	8	Unmodified	_GSILVDEY_					0	0	0		nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3	nc|ENSG00000064419|Q9Y5L0-5|TNPO3	nc|ENSG00000064419|Q9Y5L0-5|TNPO3	MULTI-SECPEP	A375_MHC_IP_R2	2	895.8404541015625	1	895.44074	894.433463	-0.45886	-0.00041089	-0.11665	-0.00010445	-0.57551	-0.00051534	895.4406235243962	77.495	0.61353	78.238	77.958	78.572	0.74293					23	11	3	0	0	0	0.69059	1	29532	29532		38.151	6.0342	1	7343800			18336	1350	13207	13308	17950	17950					-0.0179760298472047
GSIPDERLY	9	Unmodified	_GSIPDERLY_					0	0	0		MRE11A|p.N511Ifs*13|1|0.4|ENSG00000020922|chr11:94456307-94456307|T/-|frameshift_variant;nc|ENSG00000020922|P49959-2|MRE11;ENSG00000020922|ENST00000323929|MRE11;nc|ENSG00000020922|P49959-3|MRE11;MRE11A|p.Y262Ifs*19|1|0.12|ENSG00000020922|chr11:94471635-94471635|A/-|frameshift_variant	MRE11A|p.N511Ifs*13|1|0.4|ENSG00000020922|chr11:94456307-94456307|T/-|frameshift_variant	MRE11A|p.N511Ifs*13|1|0.4|ENSG00000020922|chr11:94456307-94456307|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	525.66650390625	2	525.266739	1048.51892	-0.37881	-0.00019897	0.040695	2.1376E-05	-0.33811	-0.0001776	525.2667102381776	51.277	1.1653	51.277	50.663	51.829	0					61	22	4	0	0	0	0.2415	1	18324	18324		34.932	12.196	1	46977000			18337	1060	13208	13309	17951	17951					-0.00339437799038933
GSIPDERLY	9	Unmodified	_GSIPDERLY_					0	0	0		MRE11A|p.N511Ifs*13|1|0.4|ENSG00000020922|chr11:94456307-94456307|T/-|frameshift_variant;nc|ENSG00000020922|P49959-2|MRE11;ENSG00000020922|ENST00000323929|MRE11;nc|ENSG00000020922|P49959-3|MRE11;MRE11A|p.Y262Ifs*19|1|0.12|ENSG00000020922|chr11:94471635-94471635|A/-|frameshift_variant	MRE11A|p.N511Ifs*13|1|0.4|ENSG00000020922|chr11:94456307-94456307|T/-|frameshift_variant	MRE11A|p.N511Ifs*13|1|0.4|ENSG00000020922|chr11:94456307-94456307|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	526.1820678710938	2	525.266739	1048.51892	-0.61379	-0.0003224	0.11505	6.0431E-05	-0.49874	-0.00026197	525.266716817838	50.633	1.2157	51.387	50.904	52.12	0.75406					61	23	4	0	0	0	0.46465	1	19126	19126		21.537	1.0834	1	45875000			18338	1060	13208	13309	17952	17952					-0.00339437799038933
GSIPKSQSW	9	Unmodified	_GSIPKSQSW_					0	0	0		ENSG00000135144|ENST00000548759|DTX1	ENSG00000135144|ENST00000548759|DTX1	ENSG00000135144|ENST00000548759|DTX1	MULTI-MSMS	A375_MHC_IP_R1	1	495.6558532714844	2	495.256174	988.497795	-0.61556	-0.00030486	0.24199	0.00011985	-0.37357	-0.00018502	495.25620610752696	32.668	0.60597	32.668	32.383	32.989	0					25	11	3	0	0	0	0.058226	1	10597	10597		61.09	17.232	1	4704600			18339	4652	13209	13310	17953	17953					0.0030859689210274155
GSIPKSQSW	9	Unmodified	_GSIPKSQSW_					0	0	0		ENSG00000135144|ENST00000548759|DTX1	ENSG00000135144|ENST00000548759|DTX1	ENSG00000135144|ENST00000548759|DTX1	MULTI-MSMS	A375_MHC_IP_R2	2	495.6559143066406	2	495.256174	988.497795	-0.48305	-0.00023923	0.2466	0.00012213	-0.23644	-0.0001171	495.2561913515824	31.984	0.65992	32.721	32.401	33.061	0.73692					25	12	3	0	0	0	0.037085	1	11333	11333		69.338	29.381	1	5347300			18340	4652	13209	13310	17954	17954					0.0030859689210274155
GSIQQSKMLE	10	Unmodified	_GSIQQSKMLE_					0	0	0		MAGEE2|p.E113K|1|0.38|ENSG00000186675|chrX:75784715-75784715|C/T|missense_variant	MAGEE2|p.E113K|1|0.38|ENSG00000186675|chrX:75784715-75784715|C/T|missense_variant	MAGEE2|p.E113K|1|0.38|ENSG00000186675|chrX:75784715-75784715|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	560.6871337890625	2	560.786981	1119.55941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.341	1	52.093	51.593	52.593	0.75225								0	0	0	0.11428	1	19320	19320		41.84	15.571	1				18341	14339	13210	13311	17955	17955					0.004411605290670195
GSITGKSQL	9	Unmodified	_GSITGKSQL_					0	0	0		ENST00000268607.9_1_16:87437869-87437944:+|nuORF	ENST00000268607.9_1_16:87437869-87437944:+|nuORF	ENST00000268607.9_1_16:87437869-87437944:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	445.650634765625	2	445.750724	889.486896	-0.57691	-0.00025716	-0.86487	-0.00038551	-1.4418	-0.00064267	445.75062763120235	34.87	0.60582	35.634	35.273	35.878	0.76338					15	11	2	0	0	0	0.78798	1	12464	12464		1.6526	0.96225	1	789210			18342	10360	13211	13312	17956	17956					0.03773194517805223
GSITGPAHW	9	Unmodified	_GSITGPAHW_					0	0	0		nc|ENSG00000158793|Q86X76-5|NIT1;nc|ENSG00000158793|Q86X76-2|NIT1;nc|ENSG00000158793|Q86X76-4|NIT1;ENSG00000158793|ENST00000368009|NIT1;nc|ENSG00000158793|Q86X76-3|NIT1;ENST00000485594.1_1_1:161089027-161090552:+|nuORF	nc|ENSG00000158793|Q86X76-5|NIT1	nc|ENSG00000158793|Q86X76-5|NIT1	MULTI-MSMS	A375_MHC_IP_R1	1	463.6299133300781	2	463.229959	924.445365	-0.092577	-4.2885E-05	0.41751	0.00019341	0.32494	0.00015052	463.2301488155979	47.731	0.60543	47.731	47.517	48.122	0					21	11	3	0	0	0	0.060021	1	16794	16794		60.39	34.048	1	3890200			18343	6330	13212	13313	17957	17957					-0.019879414508636728
GSITGPAHW	9	Unmodified	_GSITGPAHW_					0	0	0		nc|ENSG00000158793|Q86X76-5|NIT1;nc|ENSG00000158793|Q86X76-2|NIT1;nc|ENSG00000158793|Q86X76-4|NIT1;ENSG00000158793|ENST00000368009|NIT1;nc|ENSG00000158793|Q86X76-3|NIT1;ENST00000485594.1_1_1:161089027-161090552:+|nuORF	nc|ENSG00000158793|Q86X76-5|NIT1	nc|ENSG00000158793|Q86X76-5|NIT1	MULTI-MSMS	A375_MHC_IP_R2	2	463.6299743652344	2	463.229959	924.445365	-0.35852	-0.00016608	0.35755	0.00016563	-0.00097136	-4.4996E-07	463.2300527836641	46.932	0.76388	47.693	47.258	48.022	0.76127					24	14	3	0	0	0	0.060021	1	17580	17580		60.39	40.951	1	3412300			18344	6330	13212	13313	17958	17958					-0.019879414508636728
GSKDKNFQW	9	Unmodified	_GSKDKNFQW_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-SECPEP	A375_MHC_IP_R1	1	370.91729736328125	3	370.517329	1108.53016	0.10192	3.7763E-05	0.076938	2.8507E-05	0.17886	6.627E-05	370.5173169382477	30.882	0.66018	30.882	30.703	31.363	0					28	12	3	0	0	0	0.73926	1	9856	9856		8.9762	0.53194	1	15038000			18345	6015	13213	13314	17959	17959					-0.019766157048934474
GSKYVRFTDK	10	Unmodified	_GSKYVRFTDK_					0	0	0			REV__ENST00000542710.3_1_11:73882466-73916947:+|nuORF	REV__ENST00000542710.3_1_11:73882466-73916947:+|nuORF	MSMS	A375_MHC_IP_R1	1	600.6332397460938	2	600.822212	1199.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.71	1	138.71	138.21	139.21	0								0	0	0	0.15382	1	53345	53345		13.906	6.6168	1		+		18346	22653	13214	13315	17960	17960					0.038042019090198664
GSLATHSYYA	10	Unmodified	_GSLATHSYYA_					0	0	0			REV__ENST00000504409.3_1_12:92860608-92860689:+|nuORF	REV__ENST00000504409.3_1_12:92860608-92860689:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	537.21533203125	2	535.251089	1068.48762	-0.66068	-0.00035363	0.31328	0.00016768	-0.34741	-0.00018595	535.2509905829936	85.972	1.4271	86.705	86.082	87.509	0.733					78	27	5	0	0	0	0.71245	1	32553	32553		6.7232	0.51738	1	30905000	+		18347	25527	13215	13316	17961	17961					-0.043880108331450174
GSLDFQRGW	9	Unmodified	_GSLDFQRGW_					0	0	0		chr8:107336271-107336384|286|14.84|0.38|5.3|-|ENST00000520734|ANGPT1,ANGPT1;nc|ENSG00000154188|Q15389-2|ANGPT1;ENSG00000154188|ENST00000517746|ANGPT1;ANGPT1|p.E343K|1|0.35|ENSG00000154188|chr8:107293947-107293947|C/T|missense_variant;ENST00000518386.5_1_8:108276516-108334150:-|nuORF;ENST00000522400.1_1_8:108296908-108306289:-|nuORF;ENST00000521950.1_1_8:108296908-108334178:-|nuORF	chr8:107336271-107336384|286|14.84|0.38|5.3|-|ENST00000520734|ANGPT1,ANGPT1	chr8:107336271-107336384|286|14.84|0.38|5.3|-|ENST00000520734|ANGPT1,ANGPT1	MULTI-MSMS	A375_MHC_IP_R1	1	533.6590576171875	2	533.259248	1064.50394	-0.49179	-0.00026225	-1.3445	-0.00071695	-1.8363	-0.0009792	533.2585153375119	71.304	0.45782	71.304	71.108	71.565	0					13	8	2	0	0	0	0.54799	1	25923	25923		17.443	2.6044	1	2095800			18348	503	13216	13317	17962	17962					-0.025728848763719725
GSLDFQRGW	9	Unmodified	_GSLDFQRGW_					0	0	0		chr8:107336271-107336384|286|14.84|0.38|5.3|-|ENST00000520734|ANGPT1,ANGPT1;nc|ENSG00000154188|Q15389-2|ANGPT1;ENSG00000154188|ENST00000517746|ANGPT1;ANGPT1|p.E343K|1|0.35|ENSG00000154188|chr8:107293947-107293947|C/T|missense_variant;ENST00000518386.5_1_8:108276516-108334150:-|nuORF;ENST00000522400.1_1_8:108296908-108306289:-|nuORF;ENST00000521950.1_1_8:108296908-108334178:-|nuORF	chr8:107336271-107336384|286|14.84|0.38|5.3|-|ENST00000520734|ANGPT1,ANGPT1	chr8:107336271-107336384|286|14.84|0.38|5.3|-|ENST00000520734|ANGPT1,ANGPT1	MULTI-SECPEP	A375_MHC_IP_R2	2	533.2080688476562	2	533.259248	1064.50394	-0.72407	-0.00038612	0.84762	0.000452	0.12355	6.5884E-05	533.2599537692022	70.628	0.50577	71.362	70.997	71.503	0.73421					13	9	2	0	0	0	0.67471	1	26805	26805		22.658	11.018	1	2226100			18349	503	13216	13317	17963	17963					-0.025728848763719725
GSLERLQLGY	10	Unmodified	_GSLERLQLGY_					0	0	0		ENSG00000170049|ENST00000303790|KCNAB3	ENSG00000170049|ENST00000303790|KCNAB3	ENSG00000170049|ENST00000303790|KCNAB3	MULTI-SECPEP	A375_MHC_IP_R1	1	568.2167358398438	2	568.308938	1134.60332	-0.45305	-0.00025747	-0.47353	-0.00026911	-0.92658	-0.00052658	568.3086726692125	52.719	0.76086	52.719	52.136	52.897	0					18	14	2	0	0	0	0.79895	1	18724	18724		26.268	2.4784	1	4135000			18350	7467	13217	13318	17964	17964					0.04140513017705416
GSLEVIRKW	9	Unmodified	_GSLEVIRKW_					0	0	0		nc|ENSG00000123358|P22736-2|NR4A1;ENSG00000123358|ENST00000394825|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	MULTI-MSMS	A375_MHC_IP_R1	1	363.61328125	3	363.213469	1086.61858	0.067381	2.4474E-05	-0.13669	-4.9647E-05	-0.069306	-2.5173E-05	363.2133940189867	52.719	0.91385	52.719	52.387	53.301	0					49	17	5	0	0	0	0.082375	1	18703	18703		49.527	30.165	1	31516000			18351	3841	13218	13319	17965	17965					0.07873424605554646
GSLEVIRKW	9	Unmodified	_GSLEVIRKW_					0	0	0		nc|ENSG00000123358|P22736-2|NR4A1;ENSG00000123358|ENST00000394825|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	MULTI-SECPEP	A375_MHC_IP_R1	1	544.7167358398438	2	544.316566	1086.61858	-0.67301	-0.00036633	1.1078	0.00060297	0.43475	0.00023664	544.3173430150111	52.717	0.96221	52.717	52.186	53.148	0					55	18	4	0	0	0	0.0082179	1	18700	18700		165.72	94.587	1	65595000			18352	3841	13218	13319	17966	17966					0.07873424605554646
GSLEVIRKW	9	Unmodified	_GSLEVIRKW_					0	0	0		nc|ENSG00000123358|P22736-2|NR4A1;ENSG00000123358|ENST00000394825|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	MULTI-MSMS	A375_MHC_IP_R2	2	363.6130065917969	3	363.213469	1086.61858	-0.37122	-0.00013483	-0.092037	-3.3429E-05	-0.46325	-0.00016826	363.2133979643837	51.833	0.76239	52.585	52.27	53.032	0.75225					48	14	5	0	0	0	0.04447	1	19464	19464		53.317	31.727	1	35015000			18353	3841	13218	13319	17967	17967					0.07873424605554646
GSLEVIRKW	9	Unmodified	_GSLEVIRKW_					0	0	0		nc|ENSG00000123358|P22736-2|NR4A1;ENSG00000123358|ENST00000394825|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	MULTI-SECPEP	A375_MHC_IP_R2	2	544.7160034179688	2	544.316566	1086.61858	-1.0868	-0.00059155	1.4144	0.00076986	0.32758	0.00017831	544.3177693397357	51.836	1.0168	52.588	51.966	52.983	0.75225					53	19	4	0	0	0	0.028087	1	19463	19463		106.94	54.672	1	66956000			18354	3841	13218	13319	17968	17968					0.07873424605554646
GSLFQCTA	8	Unmodified	_GSLFQCTA_					0	0	0			REV__ENSG00000259823|ENST00000590317|LYPD8	REV__ENSG00000259823|ENST00000590317|LYPD8	MSMS	A375_MHC_IP_R1	1	413.5894470214844	2	413.691821	825.369089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.09	1	139.09	138.59	139.59	0								0	0	0	0.16876	1	53476	53476		4.756	0	1		+		18355	22903	13219	13320	17969	17969					-0.05058081342497189
GSLGLKLCWIC	11	Unmodified	_GSLGLKLCWIC_					0	0	0		ENST00000376723.7_1_2:128947470-128947854:+|nuORF	ENST00000376723.7_1_2:128947470-128947854:+|nuORF	ENST00000376723.7_1_2:128947470-128947854:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	398.9798583984375	3	398.212084	1191.61442	0.038312	1.5256E-05	-1.3501	-0.00053761	-1.3117	-0.00052235	398.21156126001915	44.105	0.30359	44.875	44.782	45.086	0.76909					9	5	2	0	0	0	0.99252	1	16525	16525		5.5233	0.47577	1	898340			18356	11290	13220	13321	17970	17970					0.0262787579599717
GSLGVLVHW	9	Unmodified	_GSLGVLVHW_					0	0	0		ENSG00000213995|ENST00000680254|NAXD;nc|ENSG00000213995|Q8IW45|NAXD;nc|ENSG00000213995|Q8IW45-2|NAXD;nc|ENSG00000213995|Q8IW45-3|NAXD;nc|ENSG00000213995|Q8IW45-4|NAXD;ENST00000470164.2_1_13:111274697-111290872:+|nuORF	ENSG00000213995|ENST00000680254|NAXD	ENSG00000213995|ENST00000680254|NAXD	MULTI-SECPEP	A375_MHC_IP_R1	1	484.6715393066406	2	484.271627	966.528701	-0.27528	-0.00013331	0.068994	3.3412E-05	-0.20629	-9.9901E-05	484.2715393173139	98.765	0.35659	98.765	98.659	99.015	0					12	6	3	0	0	0	0.017833	1	36301	36301		81.864	63.729	1	1435000			18357	9595	13221	13322	17971	17971					0.04409794996990968
GSLGVLVHW	9	Unmodified	_GSLGVLVHW_					0	0	0		ENSG00000213995|ENST00000680254|NAXD;nc|ENSG00000213995|Q8IW45|NAXD;nc|ENSG00000213995|Q8IW45-2|NAXD;nc|ENSG00000213995|Q8IW45-3|NAXD;nc|ENSG00000213995|Q8IW45-4|NAXD;ENST00000470164.2_1_13:111274697-111290872:+|nuORF	ENSG00000213995|ENST00000680254|NAXD	ENSG00000213995|ENST00000680254|NAXD	MULTI-SECPEP	A375_MHC_IP_R2	2	484.67138671875	2	484.271627	966.528701	-0.66475	-0.00032192	0.30311	0.00014679	-0.36164	-0.00017513	484.2716577370345	97.885	0.45909	98.641	98.381	98.84	0.75587					15	8	2	0	0	0	0.23974	1	37179	37179		49.669	17.552	1	1017300			18358	9595	13221	13322	17972	17972					0.04409794996990968
GSLIWLRRVYL	11	Unmodified	_GSLIWLRRVYL_					0	0	0		nc|ENSG00000163915|Q96M15|IGF2BP2-AS1	nc|ENSG00000163915|Q96M15|IGF2BP2-AS1	nc|ENSG00000163915|Q96M15|IGF2BP2-AS1	MSMS	A375_MHC_IP_R2	2	459.35845947265625	3	459.278473	1374.81359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.11	1	137.22	136.72	137.72	0.11134								0	0	0	0.16309	1	53826	53826		2.6312	0.37851	1				18359	14723	13222	13323	17973	17973					0.1411759541056199
GSLLGRDALTL	11	Unmodified	_GSLLGRDALTL_					0	0	0			REV__ENST00000531870.5_1_11:33183268-33211605:+|nuORF	REV__ENST00000531870.5_1_11:33183268-33211605:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	558.723876953125	2	558.324588	1114.63462	-0.77282	-0.00043148	0.37088	0.00020707	-0.40194	-0.00022441	558.3245228928196	133.02	1.0714	133.02	132.74	133.81	0					44	20	3	0	0	0	0.69759	1	51299	51299		15.739	3.5639	1	23854000	+		18360	25859	13223	13324	17974	17974					0.08189086051788763
GSLLGRDALTL	11	Unmodified	_GSLLGRDALTL_					0	0	0			REV__ENST00000531870.5_1_11:33183268-33211605:+|nuORF	REV__ENST00000531870.5_1_11:33183268-33211605:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	558.7242431640625	2	558.324588	1114.63462	-0.65717	-0.00036691	0.073305	4.0928E-05	-0.58386	-0.00032598	558.3244863557911	132.9	1.3716	133.07	132.64	134.01	0.16487					49	26	3	0	0	0	0.72583	1	52286	52286		12.873	2.0731	1	29089000	+		18361	25859	13223	13324	17975	17975					0.08189086051788763
GSLLLSPKLLS	11	Unmodified	_GSLLLSPKLLS_					0	0	0			REV__ENST00000428494.6_2_17:40346433-40346529:-|nuORF	REV__ENST00000428494.6_2_17:40346433-40346529:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	376.9656677246094	3	376.572663	1126.69616	-0.057751	-2.1747E-05	2.3685	0.00089191	2.3107	0.00087016	376.57366956661076	28.233	0.15188	28.912	28.808	28.96	0.67857					4	2	2	0	0	0	0.72801	1	9734	9734		5.8681	1.1522	1	458450	+		18362	24678	13224	13325	17976	17976					0.13788017751085135
GSLPSGFAQW	10	Unmodified	_GSLPSGFAQW_					0	0	0		ENSG00000198715|ENST00000362007|GLMP;nc|ENSG00000198715|Q8WWB7-2|GLMP	ENSG00000198715|ENST00000362007|GLMP	ENSG00000198715|ENST00000362007|GLMP	MULTI-SECPEP	A375_MHC_IP_R1	1	525.6563720703125	2	525.256174	1048.49779	-0.23908	-0.00012558	-0.12215	-6.416E-05	-0.36123	-0.00018974	525.2559865676178	107.58	0.76544	107.58	107.24	108	0					35	14	3	0	0	0	0.071695	1	39437	39437		78.728	29.174	1	6652200			18363	9305	13225	13326	17977	17977					-0.024514031078979315
GSLPSGFAQW	10	Unmodified	_GSLPSGFAQW_					0	0	0		ENSG00000198715|ENST00000362007|GLMP;nc|ENSG00000198715|Q8WWB7-2|GLMP	ENSG00000198715|ENST00000362007|GLMP	ENSG00000198715|ENST00000362007|GLMP	MULTI-MSMS	A375_MHC_IP_R2	2	525.6556396484375	2	525.256174	1048.49779	-0.55775	-0.00029296	-0.2544	-0.00013362	-0.81215	-0.00042658	525.2559237371398	106.83	0.8112	107.59	107.24	108.05	0.75977					36	15	3	0	0	0	0.11665	1	40334	40334		60.074	10.52	1	6393400			18364	9305	13225	13326	17978	17978					-0.024514031078979315
GSLQEKEVL	9	Unmodified	_GSLQEKEVL_					0	0	0		ENST00000567019.1_1_15:43489502-43501706:-|nuORF;nc|ENSG00000166947|P16452-3|EPB42;ENSG00000166947|ENST00000441366|EPB42;nc|ENSG00000166947|P16452-2|EPB42	ENST00000567019.1_1_15:43489502-43501706:-|nuORF	ENST00000567019.1_1_15:43489502-43501706:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	501.6903076171875	2	501.776939	1001.53933	-0.99774	-0.00050064	-0.081422	-4.0856E-05	-1.0792	-0.0005415	501.7770190424961	38.517	0.50899	39.292	39.047	39.556	0.77451					14	9	3	0	0	0	0.71541	1	14086	14086		16.942	1.0951	1	1404600			18365	7137	13226	13327	17979	17979					0.038617328607642776
GSLQPLSPRF	10	Unmodified	_GSLQPLSPRF_					0	0	0		ENST00000479961.1_3_15:80181695-80215979:-|nuORF;ENST00000485386.1_1_15:80191454-80215979:-|nuORF	ENST00000479961.1_3_15:80181695-80215979:-|nuORF	ENST00000479961.1_3_15:80181695-80215979:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	551.7061157226562	2	551.306198	1100.59784	-0.6542	-0.00036066	0.34617	0.00019084	-0.30803	-0.00016982	551.3064477368456	52.617	0.50971	52.617	52.387	52.897	0					16	9	2	0	0	0	0.85215	1	18750	18750		12.873	2.7987	1	2523700			18366	12488	13227	13328	17980	17980					0.051568342258860866
GSLQPLSPRF	10	Unmodified	_GSLQPLSPRF_					0	0	0		ENST00000479961.1_3_15:80181695-80215979:-|nuORF;ENST00000485386.1_1_15:80191454-80215979:-|nuORF	ENST00000479961.1_3_15:80181695-80215979:-|nuORF	ENST00000479961.1_3_15:80181695-80215979:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	551.306198	1100.59784	-1.0507	-0.00057924	0.14487	7.987E-05	-0.9058	-0.00049937	551.3063645069342	51.764	0.5094	52.516	52.219	52.729	0.75225	-0.050229	-0.00014794	NaN	12.873	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2513300			18367	12488	13227	13328							0.051568342258860866
GSLSLHTPW	9	Unmodified	_GSLSLHTPW_					0	0	0		ENST00000520337.1_1_8:104384717-104384846:+|nuORF	ENST00000520337.1_1_8:104384717-104384846:+|nuORF	ENST00000520337.1_1_8:104384717-104384846:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	499.6587829589844	2	499.258717	996.50288	-0.19498	-9.7347E-05	0.12002	5.992E-05	-0.074965	-3.7427E-05	499.2587740490399	78.682	0.6084	78.682	78.352	78.96	0					25	11	3	0	0	0	0.004194	1	28715	28715		156.16	129.27	1	6391600			18368	12992	13228	13329	17981	17981					0.004489007547022084
GSLSLHTPW	9	Unmodified	_GSLSLHTPW_					0	0	0		ENST00000520337.1_1_8:104384717-104384846:+|nuORF	ENST00000520337.1_1_8:104384717-104384846:+|nuORF	ENST00000520337.1_1_8:104384717-104384846:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	499.65863037109375	2	499.258717	996.50288	-0.55068	-0.00027493	-0.19346	-9.6588E-05	-0.74414	-0.00037152	499.25869684136876	77.81	0.56107	78.553	78.265	78.827	0.74294					22	10	3	0	0	0	0.0022313	1	29535	29535		141.83	107.72	1	4979700			18369	12992	13228	13329	17982	17982					0.004489007547022084
GSNANAVEVLL	11	Unmodified	_GSNANAVEVLL_					0	0	0		tr|U7SGG0|U7SGG0_FUSNUGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmSPE=3SV=1	tr|U7SGG0|U7SGG0_FUSNUGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmSPE=3SV=1	tr|U7SGG0|U7SGG0_FUSNUGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmSPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	1087.6358642578125	1	1086.57896	1085.57169	-0.0021121	-2.295E-06	-0.56793	-0.0006171	-0.57005	-0.0006194	1086.5782884634232	70.845	0.40424	71.579	71.402	71.806	0.73421					11	7	2	0	0	0	0.73459	1	26928	26928		4.5289	0.19963	1	5908400			18370	29403	13229	13330	17983	17983					0.032325202637593975
GSNPARYEF	9	Unmodified	_GSNPARYEF_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-SECPEP	A375_MHC_IP_R1	1	521.1432495117188	2	520.743431	1039.47231	-0.52752	-0.0002747	0.29072	0.00015139	-0.2368	-0.00012331	520.743545263983	38.547	0.96965	38.547	38.268	39.238	0					52	18	4	0	0	0	0.011256	1	13031	13031		121.35	73.597	1	123630000			18371	520	13230	13331	17984	17984					-0.04584877630327355
GSNPARYEF	9	Unmodified	_GSNPARYEF_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-MSMS	A375_MHC_IP_R2	2	521.6673583984375	2	520.743431	1039.47231	-0.82321	-0.00042868	-0.036151	-1.8826E-05	-0.85936	-0.00044751	520.7434097043572	37.687	0.87157	38.461	38.227	39.098	0.77451					47	16	4	0	0	0	0.068071	1	13824	13824		57.249	30.981	1	121700000			18372	520	13230	13331	17985	17985					-0.04584877630327355
GSNPHLQTF	9	Unmodified	_GSNPHLQTF_					0	0	0		nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENSG00000139641|ENST00000394048|ESYT1	nc|ENSG00000139641|Q9BSJ8-2|ESYT1	nc|ENSG00000139641|Q9BSJ8-2|ESYT1	MULTI-MSMS	A375_MHC_IP_R1	1	501.1457214355469	2	500.745973	999.477394	-0.64843	-0.0003247	0.1418	7.1007E-05	-0.50663	-0.00025369	500.74600009439354	36.561	0.75946	36.561	36.236	36.996	0					39	14	3	0	0	0	0.0015806	4	12182	12145;12182;12288;12365		148.27	97.413	1	51717000			18373	5098	13231	13332	17986;17987;17988;17989	17987					-0.02236573767720529
GSNPHLQTF	9	Unmodified	_GSNPHLQTF_					0	0	0		nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENSG00000139641|ENST00000394048|ESYT1	nc|ENSG00000139641|Q9BSJ8-2|ESYT1	nc|ENSG00000139641|Q9BSJ8-2|ESYT1	MULTI-MSMS	A375_MHC_IP_R2	2	501.1456604003906	2	500.745973	999.477394	-0.76694	-0.00038404	0.24689	0.00012363	-0.52005	-0.00026041	500.7460460451644	35.759	1.017	36.522	35.98	36.997	0.76338					55	19	5	0	0	0	0.014789	2	12906	12891;12906		90.135	29.745	1	57891000			18374	5098	13231	13332	17990;17991	17991					-0.02236573767720529
GSPLWLCLLL	10	Unmodified	_GSPLWLCLLL_					0	0	0			REV__nc|ENSG00000120256|Q86VZ4-2|LRP11	REV__nc|ENSG00000120256|Q86VZ4-2|LRP11	MULTI-MSMS	A375_MHC_IP_R1	1	372.9414978027344	3	372.215822	1113.62564	0.52669	0.00019604	-0.1843	-6.86E-05	0.34239	0.00012744	372.2156996205198	39.215	0.81178	39.215	38.832	39.643	0					29	15	3	0	0	0	0.70651	1	13540	13540		5.4027	0.99656	1	6659700	+		18375	18117	13232	13333	17992	17992					0.07337021161765733
GSPQEASAVMS	11	Unmodified	_GSPQEASAVMS_					0	0	0			REV__ENST00000393023.2_1_13:64385317-64385740:-|nuORF	REV__ENST00000393023.2_1_13:64385317-64385740:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	532.6400146484375	2	532.239864	1062.46517	-0.49922	-0.00026571	1.583	0.00084255	1.0838	0.00057684	532.2404233225112	46.848	0.60937	47.61	47.309	47.919	0.76128					19	11	2	0	0	0	0.56199	2	17543	17543;17650		26.268	2.2682	1	5045900	+		18376	24285	13233	13334	17993;17994	17993					-0.0635597829307244
GSPSVVHL	8	Unmodified	_GSPSVVHL_					0	0	0		TBL3|p.G152S|1|0.48|ENSG00000183751|chr16:1974837-1974837|G/A|missense_variant	TBL3|p.G152S|1|0.48|ENSG00000183751|chr16:1974837-1974837|G/A|missense_variant	TBL3|p.G152S|1|0.48|ENSG00000183751|chr16:1974837-1974837|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	398.62158203125	2	398.221603	794.428653	-0.13579	-5.4076E-05	0.51288	0.00020424	0.37709	0.00015017	398.22174350646645	40.18	0.55734	40.955	40.626	41.183	0.77451					12	10	2	0	0	0	0.70843	1	14884	14884		32.117	1.8922	1	3344000			18377	29309	13234	13335	17995	17995					0.023215576631855583
GSPTPPSRGSY	11	Unmodified	_GSPTPPSRGSY_					0	0	0			REV__KIAA2013|p.T256S|1|0.5|ENSG00000116685|chr1:11925472-11925472|T/A|missense_variant	REV__KIAA2013|p.T256S|1|0.5|ENSG00000116685|chr1:11925472-11925472|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	553.6665649414062	2	553.26727	1104.51999	-0.4912	-0.00027176	-0.21933	-0.00012135	-0.71053	-0.00039311	553.267073604071	77.839	0.46036	77.839	77.588	78.048	0					13	8	2	0	0	0	0.71476	1	28409	28409		14.405	1.3629	1	1919800	+		18378	26846	13235	13336	17996	17996					-0.02809223430131169
GSPVTWWPAWL	11	Unmodified	_GSPVTWWPAWL_					0	0	0			REV__PODN|p.A587Pfs*33|1|0.59|ENSG00000174348|chr1:53080827-53080827|C/-|frameshift_variant	REV__PODN|p.A587Pfs*33|1|0.59|ENSG00000174348|chr1:53080827-53080827|C/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	650.2308349609375	2	650.329673	1298.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.894	1	19.894	19.394	20.394	0								0	0	0	0.16258	1	5028	5028		5.2969	0.76802	1		+		18379	27816	13236	13337	17997	17997					0.007416937770358345
GSQAGKECFY	10	Unmodified	_GSQAGKECFY_					0	0	0		ENST00000398689.2_1_10:76415232-76415652:+|nuORF	ENST00000398689.2_1_10:76415232-76415652:+|nuORF	ENST00000398689.2_1_10:76415232-76415652:+|nuORF	MSMS	A375_MHC_IP_R2	2	545.2092895507812	2	545.237124	1088.45969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.198	1	72.932	72.432	73.432	0.73421								0	0	0	0.15207	1	27398	27398		13.906	5.9959	1				18380	11525	13237	13338	17998	17998					-0.08099657084881073
GSQASDNEGHS	11	Unmodified	_GSQASDNEGHS_					0	0	0		ENSG00000143631|ENST00000368799|FLG;CON__P20930	ENSG00000143631|ENST00000368799|FLG	ENSG00000143631|ENST00000368799|FLG	MSMS	A375_MHC_IP_R2	2	544.6341552734375	2	544.715599	1087.41664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.098	1	72.832	72.332	73.332	0.73421								0	0	0	0.16097	1	27359	27359		13.615	4.2317	1			+	18381	599	13238	13339	17999	17999					-0.1235675560863001
GSRALLRP	8	Unmodified	_GSRALLRP_					0	0	0		ENST00000552318.5_1_12:111052034-111064296:+|nuORF;ENST00000547868.1_1_12:111051980-111066631:+|nuORF;ENST00000546643.1_1_12:111051980-111066834:+|nuORF	ENST00000552318.5_1_12:111052034-111064296:+|nuORF	ENST00000552318.5_1_12:111052034-111064296:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	435.66937255859375	2	435.269419	868.524284	-0.14778	-6.4326E-05	-0.03701	-1.6109E-05	-0.1848	-8.0436E-05	435.2694247661256	31.458	0.81117	31.458	31.059	31.87	0					25	15	3	0	0	0	0.7773	1	10077	10077		4.756	0	1	1791400			18382	13332	13239	13340	18000	18000					0.08476330574080748
GSRARPGRRPN	11	Unmodified	_GSRARPGRRPN_					0	0	0			REV__ENST00000450554.6_1_19:56165635-56166109:+|nuORF	REV__ENST00000450554.6_1_19:56165635-56166109:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	408.5789489746094	3	408.565788	1222.67553	-0.3081	-0.00012588	3.3403	0.0013647	3.0322	0.0012388	408.5672777065909	24.22	0.65714	24.22	24.092	24.749	0					19	12	2	0	0	0	0.73016	1	6758	6758		4.4062	1.0865	1	6253700	+		18383	24886	13240	13341	18001	18001					0.07310284934669653
GSSDFVQIRS	10	Unmodified	_GSSDFVQIRS_					0	0	0			REV__nc|ENSG00000110171|O75382-4|TRIM3	REV__nc|ENSG00000110171|O75382-4|TRIM3	MULTI-SECPEP	A375_MHC_IP_R1	1	548.1954956054688	2	548.275095	1094.53564	-0.64941	-0.00035605	1.1359	0.00062276	0.48645	0.00026671	549.2784876846115	68.512	0.91129	68.512	68.159	69.07	0					39	17	3	0	0	0	0.87043	1	24907	24907		20.415	6.7997	1	2015700	+		18384	17620	13241	13342	18002	18002					-0.007849369131008643
GSSDGTIRLW	10	Unmodified	_GSSDGTIRLW_					0	0	0		ENSG00000114742|ENST00000302313|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;nc|ENSG00000114742|Q8TAF3-5|WDR48	ENSG00000114742|ENST00000302313|WDR48	ENSG00000114742|ENST00000302313|WDR48	MULTI-MSMS	A375_MHC_IP_R1	1	546.67724609375	2	546.277638	1090.54072	-0.60993	-0.00033319	-0.098151	-5.3618E-05	-0.70808	-0.00038681	546.2775759576635	76.955	0.86415	76.955	76.622	77.486	0					31	16	2	0	0	0	0.00093258	2	28005	27963;28005		147.24	29.48	1	88734000			18385	3241	13242	13343	18003;18004	18004					-0.0009263305048534676
GSSDRDFEKV	10	Unmodified	_GSSDRDFEKV_					0	0	0		PLEKHG4B|p.V778Gfs*17|1|0.33|ENSG00000153404|chr5:163464-163465|-/C|frameshift_variant;ENSG00000153404|ENST00000637938|PLEKHG4B	PLEKHG4B|p.V778Gfs*17|1|0.33|ENSG00000153404|chr5:163464-163465|-/C|frameshift_variant	PLEKHG4B|p.V778Gfs*17|1|0.33|ENSG00000153404|chr5:163464-163465|-/C|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	570.653564453125	2	570.27001	1138.52547	-0.29704	-0.00016939	-0.14087	-8.0332E-05	-0.43791	-0.00024973	570.2698832277721	76.164	0.60838	76.905	76.436	77.045	0.74052					28	11	3	0	0	0	0.8866	1	28923	28923		19.362	19.362	1	5462800			18386	6031	13243	13344	18005	18005					-0.038255446383573144
GSSGFRSLGY	10	Unmodified	_GSSGFRSLGY_					0	0	0		ENSG00000198390|ENST00000355459|KRTAP13-1	ENSG00000198390|ENST00000355459|KRTAP13-1	ENSG00000198390|ENST00000355459|KRTAP13-1	MSMS	A375_MHC_IP_R1	1	515.6652221679688	2	515.751256	1029.48796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.293	1	63.293	62.793	63.793	0								0	0	0	0.15158	1	22875	22875		14.838	3.198	1				18387	9263	13244	13345	18006	18006					-0.02560591113274313
GSSHCCGS	8	Unmodified	_GSSHCCGS_					0	0	0			REV__LCE5A|p.G107S|1|0.59|ENSG00000186207|chr1:152511853-152511853|G/A|missense_variant	REV__LCE5A|p.G107S|1|0.59|ENSG00000186207|chr1:152511853-152511853|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	369.0682373046875	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.05	1	108.81	108.31	109.31	0.75436								0	0	0	0.16876	1	40808	40808		0.69038	0.69038	1		+		18388	20122	13245	13346	18007	18007					-0.15180617356338644
GSSHLISTSSW	11	Unmodified	_GSSHLISTSSW_					0	0	0		ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	A375_MHC_IP_R1	1	581.6802368164062	2	581.280377	1160.5462	-0.12882	-7.488E-05	-0.20687	-0.00012025	-0.33569	-0.00019513	581.2804780068025	55.983	0.60847	55.983	55.738	56.347	0					15	11	2	0	0	0	0.068878	1	20045	20045		75.761	35.811	1	2831600			18389	4718	13246	13347	18008	18008					-0.027649542586686948
GSSHLISTSSW	11	Unmodified	_GSSHLISTSSW_					0	0	0		ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	A375_MHC_IP_R2	2	581.6800537109375	2	581.280377	1160.5462	-0.4515	-0.00026245	0.12677	7.3688E-05	-0.32473	-0.00018876	581.2803445320018	55.143	0.56019	55.894	55.626	56.187	0.75075					14	10	2	0	0	0	0.048559	1	20840	20840		79.596	44.664	1	2856300			18390	4718	13246	13347	18009	18009					-0.027649542586686948
GSSLESRFQP	10	Unmodified	_GSSLESRFQP_					0	0	0			REV__ENSG00000110046|ENST00000377264|ATG2A	REV__ENSG00000110046|ENST00000377264|ATG2A	MULTI-SECPEP	A375_MHC_IP_R1	1	554.1593627929688	2	554.275095	1106.53564	-0.51861	-0.00028745	-0.17042	-9.446E-05	-0.68903	-0.00038191	554.2749614394676	61.914	0.97139	61.914	61.432	62.403	0					43	18	3	0	0	0	0.74754	1	22395	22395		22.736	4.5899	1	7184700	+		18391	17609	13247	13348	18010	18010					-0.013369369130941777
GSSLHSYIW	9	Unmodified	_GSSLHSYIW_					0	0	0		nc|ENSG00000163026|Q9H6R7-2|WDCP;ENSG00000163026|ENST00000295148|WDCP	nc|ENSG00000163026|Q9H6R7-2|WDCP	nc|ENSG00000163026|Q9H6R7-2|WDCP	MULTI-MSMS	A375_MHC_IP_R2	2	525.6843872070312	2	525.256174	1048.49779	-0.29736	-0.00015619	1.0605	0.00055702	0.76312	0.00040083	525.2566885648762	43.831	1.9228	44.601	43.112	45.035	0.7691					67	37	3	0	0	0	0.46038	1	16194	16194		21.747	1.293	1	29068000			18392	6623	13248	13349	18011	18011					-0.024514031078979315
GSSLPADVHRY	11	Unmodified	_GSSLPADVHRY_					0	0	0		nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	MULTI-MSMS	A375_MHC_IP_R1	1	602.193603515625	2	601.301644	1200.58874	-0.40692	-0.00024468	0.32543	0.00019568	-0.081489	-4.8999E-05	601.3017638472784	28.342	0.3029	28.342	28.188	28.491	0					12	5	3	0	0	0	0.46059	1	8714	8714		34.222	7.3381	1	3898200			18393	1222	13249	13350	18012	18012					-0.0035355913041712483
GSSLPADVHRY	11	Unmodified	_GSSLPADVHRY_					0	0	0		nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	MULTI-MSMS	A375_MHC_IP_R1	1	401.6033935546875	3	401.203522	1200.58874	-0.33488	-0.00013436	0.14065	5.643E-05	-0.19423	-7.7926E-05	401.2035351615404	28.317	0.55544	28.317	28.088	28.643	0					21	10	3	0	0	0	0.16228	1	8724	8724		42.068	33.316	1	13790000			18394	1222	13249	13350	18013	18013					-0.0035355913041712483
GSSLPADVHRY	11	Unmodified	_GSSLPADVHRY_					0	0	0		nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	MULTI-MSMS	A375_MHC_IP_R2	2	401.6033630371094	3	401.203522	1200.58874	-0.015579	-6.2505E-06	-0.4003	-0.0001606	-0.41588	-0.00016685	401.2034126382251	27.699	0.50596	28.377	28.149	28.655	0.67857					29	9	5	0	0	0	0.33584	1	9504	9504		30.354	24.486	1	14846000			18395	1222	13249	13350	18014	18014					-0.0035355913041712483
GSSLPADVHRY	11	Unmodified	_GSSLPADVHRY_					0	0	0		nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	MULTI-SECPEP	A375_MHC_IP_R2	2	602.0592041015625	2	601.301644	1200.58874	-0.48879	-0.00029391	0.13453	8.0894E-05	-0.35426	-0.00021301	601.3016561257319	27.713	0.35331	28.391	28.2	28.553	0.67857					10	6	2	0	0	0	0.10638	1	9512	9512		60.899	32.405	1	3787200			18396	1222	13249	13350	18015	18015					-0.0035355913041712483
GSSQNEDPSF	10	Unmodified	_GSSQNEDPSF_					0	0	0		ENSG00000101680|ENST00000389658|LAMA1;ENST00000579014.5_1_18:6942080-7042306:-|nuORF	ENSG00000101680|ENST00000389658|LAMA1	ENSG00000101680|ENST00000389658|LAMA1	MULTI-MSMS	A375_MHC_IP_R1	1	534.6167602539062	2	534.217443	1066.42033	-0.63448	-0.00033895	-0.32878	-0.00017564	-0.96326	-0.00051459	534.2172196562025	63.494	1.0197	63.494	63.121	64.141	0					51	19	4	0	0	0	0.72078	1	23124	23124		2.9952	2.9952	1	23227000			18397	2318	13250	13351	18016	18016					-0.11022085834747486
GSSQNEDPSF	10	Unmodified	_GSSQNEDPSF_					0	0	0		ENSG00000101680|ENST00000389658|LAMA1;ENST00000579014.5_1_18:6942080-7042306:-|nuORF	ENSG00000101680|ENST00000389658|LAMA1	ENSG00000101680|ENST00000389658|LAMA1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	534.217443	1066.42033	-0.76264	-0.00040741	-0.38304	-0.00020462	-1.1457	-0.00061204	534.2172059884871	62.825	0.86036	63.568	63.23	64.091	0.74263	0.037129	-2.7943E-05	NaN	2.9952	48	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21075000			18398	2318	13250	13351							-0.11022085834747486
GSSVKQAAGDW	11	Unmodified	_GSSVKQAAGDW_					0	0	0		ENSG00000183018|ENST00000329078|SPNS2	ENSG00000183018|ENST00000329078|SPNS2	ENSG00000183018|ENST00000329078|SPNS2	MULTI-MSMS	A375_MHC_IP_R1	1	553.6666870117188	2	553.26727	1104.51999	-0.6271	-0.00034695	-0.063065	-3.4892E-05	-0.69016	-0.00038184	553.267227203453	76.984	0.45906	76.984	76.776	77.235	0					15	8	2	0	0	0	0.7039	1	28094	28094		15.248	0	1	1543300			18399	8454	13251	13352	18017	18017					-0.028092234301539065
GSSVKQAAGDW	11	Unmodified	_GSSVKQAAGDW_					0	0	0		ENSG00000183018|ENST00000329078|SPNS2	ENSG00000183018|ENST00000329078|SPNS2	ENSG00000183018|ENST00000329078|SPNS2	MULTI-MATCH	A375_MHC_IP_R2	2		2	553.26727	1104.51999	-0.76587	-0.00042373	-0.17061	-9.4392E-05	-0.93648	-0.00051812	553.2670293480011	76.177	0.50792	76.918	76.691	77.199	0.74052	-0.033256	-8.1236E-05	NaN	15.248	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2578800			18400	8454	13251	13352							-0.028092234301539065
GSSYGQGG	8	Unmodified	_GSSYGQGG_					0	0	0			REV__ENSG00000174059|ENST00000310833|CD34	REV__ENSG00000174059|ENST00000310833|CD34	MULTI-MSMS	A375_MHC_IP_R2	2	712.3018798828125	1	712.289659	711.282382	-0.73485	-0.00052343	2.3957	0.0017065	1.6609	0.001183	712.2944501377609	123.76	0.15208	124.09	123.99	124.14	0.32969					4	2	2	0	0	0	0.77842	1	47679	47679		0.69038	0	1	3098000	+		18401	21262	13252	13353	18018	18018					-0.08480744572693766
GSTLNLMQW	9	Unmodified	_GSTLNLMQW_					0	0	0		ENST00000379638.8_1_5:112214193-112214352:-|nuORF	ENST00000379638.8_1_5:112214193-112214352:-|nuORF	ENST00000379638.8_1_5:112214193-112214352:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	525.6788940429688	2	525.257859	1048.50117	-0.29736	-0.00015619	-2.1483	-0.0011284	-2.4456	-0.0012846	525.2566885648762	43.831	1.9228	44.601	43.112	45.035	0.7691					67	37	3	0	0	0	0.047602	1	16279	16279		65.235	2.6623	1	29068000			18402	11340	13253	13354	18019	18019					-0.021144763255506405
GSVAKMVLPIT	11	Unmodified	_GSVAKMVLPIT_					0	0	0			REV__ENST00000438435.6_1_1:181006220-181024398:+|nuORF	REV__ENST00000438435.6_1_1:181006220-181024398:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	372.57696533203125	3	372.554615	1114.64202	0.083511	3.1113E-05	1.3582	0.00050601	1.4417	0.00053712	372.5550895899648	23.965	0.20359	23.965	23.838	24.042	0					5	3	2	0	0	0	0.73332	1	6667	6667		2.6312	0	1	2439500	+		18403	19822	13254	13355	18020	18020					0.08928102327877241
GSVDGNRIW	9	Unmodified	_GSVDGNRIW_					0	0	0		nc|ENSG00000118965|Q9P2L0|WDR35;ENSG00000118965|ENST00000281405|WDR35	nc|ENSG00000118965|Q9P2L0|WDR35	nc|ENSG00000118965|Q9P2L0|WDR35	MULTI-MSMS	A375_MHC_IP_R1	1	502.65106201171875	2	502.251423	1002.48829	-0.18377	-9.2298E-05	-0.060827	-3.055E-05	-0.24459	-0.00012285	502.251264352319	47.897	0.60557	47.897	47.567	48.173	0					29	11	4	0	0	0	0.0092471	1	16846	16846		103.35	55.605	1	5914300			18404	3566	13255	13356	18021	18021					-0.01285171393442397
GSVDGNRIW	9	Unmodified	_GSVDGNRIW_					0	0	0		nc|ENSG00000118965|Q9P2L0|WDR35;ENSG00000118965|ENST00000281405|WDR35	nc|ENSG00000118965|Q9P2L0|WDR35	nc|ENSG00000118965|Q9P2L0|WDR35	MULTI-SECPEP	A375_MHC_IP_R2	2	502.65142822265625	2	502.251423	1002.48829	-0.43265	-0.0002173	0.80379	0.0004037	0.37113	0.0001864	502.25132797930894	47.165	0.96638	47.927	47.412	48.378	0.76127					42	18	3	0	0	0	0.01128	1	17641	17641		103.35	68.421	1	4205300			18405	3566	13255	13356	18022	18022					-0.01285171393442397
GSVDILRRW	9	Unmodified	_GSVDILRRW_					0	0	0		nc|ENSG00000198959|P21980-3|TGM2;ENST00000474777.1_1_20:36774930-36793648:-|nuORF;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF;ENSG00000198959|ENST00000361475|TGM2	nc|ENSG00000198959|P21980-3|TGM2	nc|ENSG00000198959|P21980-3|TGM2	MULTI-SECPEP	A375_MHC_IP_R2	2	368.2767333984375	3	367.876969	1100.60908	-0.072496	-2.667E-05	-0.063815	-2.3476E-05	-0.13631	-5.0146E-05	367.87689960144934	61.909	0.50434	62.652	62.37	62.874	0.74263					16	9	3	0	0	0	0.65527	1	23489	23489		16.566	7.0219	1	2428000			18406	9383	13256	13357	18023	18023					0.06279656320020877
GSVLLDKRF	9	Unmodified	_GSVLLDKRF_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	518.1809692382812	2	517.803291	1033.59203	-0.41624	-0.00021553	0.11539	5.9747E-05	-0.30085	-0.00015578	517.8031644007367	45.966	0.35613	45.966	45.738	46.094	0					9	6	2	0	0	0	0.67471	1	16077	16077		22.658	6.8109	1	1867200			18407	1269	13257	13358	18024	18024					0.07657735714224145
GSVLLDKRF	9	Unmodified	_GSVLLDKRF_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	MULTI-MATCH	A375_MHC_IP_R2	2		2	517.803291	1033.59203	-0.84116	-0.00043555	-0.25813	-0.00013366	-1.0993	-0.00056921	517.8030151406382	44.981	0.30664	45.75	45.594	45.901	0.76909	-0.10792	-0.0001486	NaN	22.658	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1300400			18408	1269	13257	13358							0.07657735714224145
GSVPFPRFI	9	Unmodified	_GSVPFPRFI_					0	0	0		ENST00000571365.1_1_17:4843824-4844115:+|nuORF;ENST00000576229.5_2_17:4843824-4845751:+|nuORF	ENST00000571365.1_1_17:4843824-4844115:+|nuORF	ENST00000571365.1_1_17:4843824-4844115:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	510.686767578125	2	510.287277	1018.56	-0.41414	-0.00021133	-0.56723	-0.00028945	-0.98137	-0.00050078	510.2869719793823	100.59	1.1658	100.59	99.925	101.09	0					38	22	3	0	0	0	0.49205	1	36966	36966		34.402	9.7278	1	3760800			18409	13607	13258	13359	18025	18025					0.051463680310803284
GSVPLRLTW	9	Unmodified	_GSVPLRLTW_					0	0	0		nc|ENSG00000103248|Q2M296-4|MTHFSD;nc|ENSG00000103248|Q2M296-2|MTHFSD;nc|ENSG00000103248|Q2M296-3|MTHFSD;ENSG00000103248|ENST00000360900|MTHFSD	nc|ENSG00000103248|Q2M296-4|MTHFSD	nc|ENSG00000103248|Q2M296-4|MTHFSD	MULTI-SECPEP	A375_MHC_IP_R2	2	515.1971435546875	2	514.798009	1027.58147	-0.66208	-0.00034084	0.12193	6.2771E-05	-0.54014	-0.00027807	514.7978874477205	90.199	0.45792	90.931	90.699	91.157	0.7318					20	8	3	0	0	0	0.48845	1	34310	34310		30.703	10.289	1	3335800			18410	2434	13259	13360	18026	18026					0.06877753059779934
GSVQDPGLHVW	11	Unmodified	_GSVQDPGLHVW_					0	0	0		ENST00000415012.1_1_2:85628700-85640330:-|nuORF;nc|ENSG00000042493|P40121-2|CAPG;ENSG00000042493|ENST00000263867|CAPG	ENST00000415012.1_1_2:85628700-85640330:-|nuORF	ENST00000415012.1_1_2:85628700-85640330:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	597.1796264648438	2	597.798737	1193.58292	-0.18554	-0.00011092	-0.31623	-0.00018904	-0.50177	-0.00029996	597.7988580797372	71.61	0.45153	71.61	71.465	71.917	0					12	8	2	0	0	0	0.35173	1	26094	26094		53.833	24.751	1	2350700			18411	1175	13260	13361	18027	18027					-0.006126576421138452
GSVSIFRQF	9	Unmodified	_GSVSIFRQF_					0	0	0		ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-MSMS	A375_MHC_IP_R1	1	521.4822998046875	2	520.779816	1039.54508	-0.48153	-0.00025077	0.13182	6.8648E-05	-0.34971	-0.00018212	520.7799373642994	79.549	2.9005	79.549	79.161	82.062	0					133	56	6	0	0	0	0.0099819	1	28965	28965		122.18	78.321	1	423680000			18412	6530	13261	13362	18028	18028					0.026888761630971203
GSVTHVTSF	9	Unmodified	_GSVTHVTSF_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;ENST00000460658.5_1_22:31484094-31491444:+|nuORF;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;SMTN|p.R520W|1|0.48|ENSG00000183963|chr22:31091773-31091773|C/T|missense_variant;nc|ENSG00000183963|P53814-2|SMTN	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	MULTI-SECPEP	A375_MHC_IP_R2	2	467.6579895019531	2	467.735074	933.455596	-0.97355	-0.00045536	0.36408	0.00017029	-0.60947	-0.00028507	467.7350306161011	36.512	0.30417	37.283	37.157	37.461	0.7709					9	5	2	0	0	0	0.4261	1	13325	13325		30.637	3.7529	1	977110			18413	8546	13262	13363	18029	18029					-0.013793785162874883
GSVVGNWQY	9	Unmodified	_GSVVGNWQY_					0	0	0		ENSG00000197172|ENST00000329342|MAGEA6;ENSG00000221867|ENST00000370278|MAGEA3;chrX:152698829-152700558|283|12.93|0.02|9.51|+|ENST00000598245|MAGEA3,MAGEA3	ENSG00000197172|ENST00000329342|MAGEA6;ENSG00000221867|ENST00000370278|MAGEA3	ENSG00000221867|ENST00000370278|MAGEA3	MULTI-SECPEP	A375_MHC_IP_R1	1	505.6401672363281	2	505.240524	1008.46649	-0.37406	-0.00018899	-0.26457	-0.00013367	-0.63862	-0.00032266	505.2403982270676	79.753	0.9219	79.753	79.367	80.289	0					32	17	3	0	0	0	0.16676	1	29093	29093		41.84	25.992	1	4798000			18414	521;9127	13263	13364	18030	18030					-0.03739976142003343
GSVVGNWQY	9	Unmodified	_GSVVGNWQY_					0	0	0		ENSG00000197172|ENST00000329342|MAGEA6;ENSG00000221867|ENST00000370278|MAGEA3;chrX:152698829-152700558|283|12.93|0.02|9.51|+|ENST00000598245|MAGEA3,MAGEA3	ENSG00000197172|ENST00000329342|MAGEA6;ENSG00000221867|ENST00000370278|MAGEA3	ENSG00000221867|ENST00000370278|MAGEA3	MULTI-MSMS	A375_MHC_IP_R2	2	505.6398010253906	2	505.240524	1008.46649	-0.60699	-0.00030668	-0.37192	-0.00018791	-0.97891	-0.00049459	505.24034752250253	79.176	0.8104	79.921	79.489	80.299	0.74474					30	15	3	0	0	0	0.05754	1	30002	30002		61.357	36.684	1	4015000			18415	521;9127	13263	13364	18031	18031					-0.03739976142003343
GSVVGNWQY	9	Unmodified	_GSVVGNWQY_					0	0	0		ENSG00000197172|ENST00000329342|MAGEA6;ENSG00000221867|ENST00000370278|MAGEA3;chrX:152698829-152700558|283|12.93|0.02|9.51|+|ENST00000598245|MAGEA3,MAGEA3	ENSG00000197172|ENST00000329342|MAGEA6;ENSG00000221867|ENST00000370278|MAGEA3	ENSG00000221867|ENST00000370278|MAGEA3	MULTI-SECPEP	A375_MHC_IP_R2	2	1009.2702026367188	1	1009.47377	1008.46649	0.11638	0.00011748	-0.7544	-0.00076155	-0.63802	-0.00064406	1009.4731071984987	79.077	0.50696	79.821	79.591	80.098	0.74474					14	9	2	0	0	0	0.016309	1	30026	30026		114.65	80.547	1	2670400			18416	521;9127	13263	13364	18032	18032					-0.03739976142003343
GSVVGNWQY	9	Unmodified	_GSVVGNWQY_					0	0	0		ENSG00000197172|ENST00000329342|MAGEA6;ENSG00000221867|ENST00000370278|MAGEA3;chrX:152698829-152700558|283|12.93|0.02|9.51|+|ENST00000598245|MAGEA3,MAGEA3	ENSG00000197172|ENST00000329342|MAGEA6;ENSG00000221867|ENST00000370278|MAGEA3	ENSG00000221867|ENST00000370278|MAGEA3	MULTI-MATCH	A375_MHC_IP_R1	1		1	1009.47377	1008.46649	0.19767	0.00019955	0.0095836	9.6744E-06	0.20726	0.00020922	1009.47337553451	79.719	0.513	79.719	79.47	79.983	0	-0.051051	0.0005729	NaN	114.65	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2242600			18417	521;9127	13263	13364							-0.03739976142003343
GSWDGTLRLW	10	Unmodified	_GSWDGTLRLW_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-SECPEP	A375_MHC_IP_R1	1	596.2007446289062	2	595.80128	1189.58801	0.1288	7.674E-05	-0.37244	-0.0002219	-0.24364	-0.00014516	595.8009180128514	113.85	1.1204	113.85	113.29	114.41	0					45	21	4	0	0	0	0.012511	1	41693	41693		136.39	105.12	1	32692000			18418	9470	13264	13365	18033	18033					0.0007964622052440973
GSWDGTLRLW	10	Unmodified	_GSWDGTLRLW_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-SECPEP	A375_MHC_IP_R2	2	596.2012329101562	2	595.80128	1189.58801	-0.34093	-0.00020312	0.11254	6.7052E-05	-0.22838	-0.00013607	595.8013381124352	113.09	0.87089	113.8	113.41	114.28	0.70985					45	16	4	0	0	0	0.021882	1	42577	42577		117.76	79.585	1	35843000			18419	9470	13264	13365	18034	18034					0.0007964622052440973
GSWRAPGPAQ	10	Unmodified	_GSWRAPGPAQ_					0	0	0		ENST00000327876.4_1_2:47747956-47748880:-|nuORF	ENST00000327876.4_1_2:47747956-47748880:-|nuORF	ENST00000327876.4_1_2:47747956-47748880:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1026.4898681640625	1	1026.51155	1025.50428	0.078012	8.0081E-05	-2.1309	-0.0021874	-2.0529	-0.0021073	1026.512830092199	125.63	0.15082	125.92	125.82	125.97	0.2951					4	2	2	0	0	0	0.70496	1	49052	49052		10.074	1.3285	1	8758600			18420	10745	13265	13366	18035	18035					-0.0074546515654674295
GSWWDLSRSL	10	Unmodified	_GSWWDLSRSL_					0	0	0		chr11:69294576-69295401|198|15.46|0.69|4.49|+|1|MYEOV,MYEOV|1	chr11:69294576-69295401|198|15.46|0.69|4.49|+|1|MYEOV,MYEOV|1	chr11:69294576-69295401|198|15.46|0.69|4.49|+|1|MYEOV,MYEOV|1	MULTI-SECPEP	A375_MHC_IP_R1	1	604.1985473632812	2	603.798737	1205.58292	-0.36239	-0.00021881	-0.63139	-0.00038123	-0.99378	-0.00060004	603.7986125851586	99.345	0.91	99.345	98.864	99.774	0					25	17	2	0	0	0	0.83355	1	36483	36483		22.736	2.3217	1	3406200			18421	401	13266	13367	18036	18036					-0.011646576420844212
GSYDGFARIW	10	Unmodified	_GSYDGFARIW_					0	0	0		ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X	ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	MULTI-MSMS	A375_MHC_IP_R1	1	586.6980590820312	2	586.28018	1170.54581	-0.31573	-0.0001851	-0.00041369	-2.4254E-07	-0.31614	-0.00018535	586.2801295076385	95.758	0.45291	95.758	95.515	95.968	0					17	8	3	0	0	0	0.32622	1	35238	35238		43.982	26.869	1	2031300			18422	2004	13267	13368	18037	18037					-0.03264329187868498
GSYDGFARIW	10	Unmodified	_GSYDGFARIW_					0	0	0		ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X	ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	MULTI-SECPEP	A375_MHC_IP_R2	2	586.680419921875	2	586.28018	1170.54581	-0.27029	-0.00015846	0.35628	0.00020888	0.08599	5.0414E-05	586.2803500774556	94.938	0.50666	95.686	95.481	95.987	0.74814					20	9	3	0	0	0	0.4977	1	36082	36082		59.368	36.632	1	1971900			18423	2004	13267	13368	18038	18038					-0.03264329187868498
GSYGSLARF	9	Unmodified	_GSYGSLARF_					0	0	0		ENSG00000159377|ENST00000290541|PSMB4;ENST00000495288.5_1_1:151372054-151373071:+|nuORF;ENST00000493673.1_1_1:151372075-151372920:+|nuORF;ENST00000476467.1_1_1:151372063-151372664:+|nuORF	ENSG00000159377|ENST00000290541|PSMB4	ENSG00000159377|ENST00000290541|PSMB4	MULTI-MSMS	A375_MHC_IP_R1	1	479.19183349609375	2	479.243067	956.47158	-0.2902	-0.00013908	-0.39329	-0.00018848	-0.68349	-0.00032756	479.24286289402494	54.343	0.65765	54.343	54.063	54.72	0					27	12	3	0	0	0	0.13845	2	19395	19395;19432		43.772	13.136	1	7767000			18424	6369	13268	13369	18039;18040	18039					-0.008396722793918343
GSYGSLARF	9	Unmodified	_GSYGSLARF_					0	0	0		ENSG00000159377|ENST00000290541|PSMB4;ENST00000495288.5_1_1:151372054-151373071:+|nuORF;ENST00000493673.1_1_1:151372075-151372920:+|nuORF;ENST00000476467.1_1_1:151372063-151372664:+|nuORF	ENSG00000159377|ENST00000290541|PSMB4	ENSG00000159377|ENST00000290541|PSMB4	MULTI-MSMS	A375_MHC_IP_R2	2	479.19232177734375	2	479.243067	956.47158	-1.0915	-0.00052308	0.14866	7.1244E-05	-0.94281	-0.00045184	479.2431234222972	53.472	0.56182	54.223	53.944	54.505	0.75105					24	10	3	0	0	0	0.22013	1	20152	20152		36.506	9.6225	1	8372400			18425	6369	13268	13369	18041	18041					-0.008396722793918343
GSYLLERL	8	Unmodified	_GSYLLERL_					0	0	0		ENSG00000131462|ENST00000251413|TUBG1;ENSG00000037042|ENST00000251412|TUBG2	ENSG00000131462|ENST00000251413|TUBG1	ENSG00000131462|ENST00000251413|TUBG1	MSMS	A375_MHC_IP_R2	2	475.61676025390625	2	475.768917	949.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.549	1	75.287	74.787	75.787	0.73752								0	0	0	0.16876	1	28297	28297		12.241	2.1667	1				18426	1143	13269	13370	18042	18042					0.04650071414528156
GSYPAGTL	8	Unmodified	_GSYPAGTL_					0	0	0		nc|ENSG00000204305|Q15109-8|AGER;nc|ENSG00000204305|Q15109-9|AGER;nc|ENSG00000204305|Q15109-10|AGER;nc|ENSG00000204305|Q15109-2|AGER;nc|ENSG00000204305|Q15109-3|AGER;nc|ENSG00000204305|Q15109-4|AGER;nc|ENSG00000204305|Q15109-7|AGER;ENSG00000204305|ENST00000375076|AGER;nc|ENSG00000204305|Q15109-6|AGER	nc|ENSG00000204305|Q15109-8|AGER	nc|ENSG00000204305|Q15109-8|AGER	MULTI-MSMS	A375_MHC_IP_R1	1	765.8429565429688	1	765.377746	764.370469	-0.49319	-0.00037748	0.16444	0.00012586	-0.32875	-0.00025162	765.377870108051	60.554	0.81506	60.554	59.955	60.77	0					19	15	2	0	0	0	0.77488	1	21582	21582		13.508	0	1	2408000			18427	14859	13270	13371	18043	18043					-0.021141239820849478
GSYPAGTL	8	Unmodified	_GSYPAGTL_					0	0	0		nc|ENSG00000204305|Q15109-8|AGER;nc|ENSG00000204305|Q15109-9|AGER;nc|ENSG00000204305|Q15109-10|AGER;nc|ENSG00000204305|Q15109-2|AGER;nc|ENSG00000204305|Q15109-3|AGER;nc|ENSG00000204305|Q15109-4|AGER;nc|ENSG00000204305|Q15109-7|AGER;ENSG00000204305|ENST00000375076|AGER;nc|ENSG00000204305|Q15109-6|AGER	nc|ENSG00000204305|Q15109-8|AGER	nc|ENSG00000204305|Q15109-8|AGER	MULTI-MATCH	A375_MHC_IP_R2	2		1	765.377746	764.370469	-1.2851	-0.00098359	0.38485	0.00029455	-0.90026	-0.00068904	765.3780303645566	59.763	0.55592	60.51	60.148	60.704	0.74714	-0.021974	8.1198E-05	NaN	13.508	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2515800			18428	14859	13270	13371							-0.021141239820849478
GSYSGKAADVW	11	Unmodified	_GSYSGKAADVW_					0	0	0		ENSG00000071575|ENST00000155926|TRIB2	ENSG00000071575|ENST00000155926|TRIB2	ENSG00000071575|ENST00000155926|TRIB2	MULTI-MSMS	A375_MHC_IP_R1	1	571.1697998046875	2	570.769645	1139.52474	-0.1481	-8.453E-05	0.014241	8.1284E-06	-0.13386	-7.6401E-05	570.7696015535771	43.327	0.86543	43.327	42.942	43.808	0					37	16	4	0	0	0	0.00066621	1	15043	15043		108.26	66.422	1	12256000			18429	1515	13271	13372	18044	18044					-0.03944339287386356
GSYSGKAADVW	11	Unmodified	_GSYSGKAADVW_					0	0	0		ENSG00000071575|ENST00000155926|TRIB2	ENSG00000071575|ENST00000155926|TRIB2	ENSG00000071575|ENST00000155926|TRIB2	MULTI-MSMS	A375_MHC_IP_R2	2	571.1692504882812	2	570.769645	1139.52474	-0.23145	-0.00013211	-0.16551	-9.4465E-05	-0.39696	-0.00022657	570.7694228945916	42.572	0.76347	43.345	42.91	43.674	0.7724					35	14	4	0	0	0	0.00033631	1	15823	15823		118.21	76.37	1	11456000			18430	1515	13271	13372	18045	18045					-0.03944339287386356
GTAAIQAHY	9	Unmodified	_GTAAIQAHY_					0	0	0		nc|ENSG00000100146|P56693|SOX10;chr22:37984441-37987345|453|15.29|0.34|5.48|-|ENST00000360880|SOX10,SOX10;nc|ENSG00000100146|P56693-2|SOX10	nc|ENSG00000100146|P56693|SOX10	nc|ENSG00000100146|P56693|SOX10	MULTI-SECPEP	A375_MHC_IP_R1	1	466.18414306640625	2	466.235242	930.45593	-0.26153	-0.00012194	-0.31035	-0.0001447	-0.57189	-0.00026663	466.2352643826616	28.313	0.55693	28.313	28.188	28.745	0					13	10	2	0	0	0	0.39388	1	8726	8726		32.305	10.559	1	2261400			18431	471	13272	13373	18046	18046					-0.01207958796442199
GTAAIQAHY	9	Unmodified	_GTAAIQAHY_					0	0	0		nc|ENSG00000100146|P56693|SOX10;chr22:37984441-37987345|453|15.29|0.34|5.48|-|ENST00000360880|SOX10,SOX10;nc|ENSG00000100146|P56693-2|SOX10	nc|ENSG00000100146|P56693|SOX10	nc|ENSG00000100146|P56693|SOX10	MULTI-SECPEP	A375_MHC_IP_R2	2	466.1843566894531	2	466.235242	930.45593	-0.65057	-0.00030332	-0.24407	-0.0001138	-0.89464	-0.00041711	466.2351043475917	27.698	0.35334	28.376	28.251	28.604	0.67857					10	6	2	0	0	0	0.58271	1	9469	9469		20.454	14.722	1	2661300			18432	471	13272	13373	18047	18047					-0.01207958796442199
GTAGLLEQW	9	Unmodified	_GTAGLLEQW_					0	0	0		ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	MULTI-SECPEP	A375_MHC_IP_R1	1	487.1530456542969	2	487.750724	973.486896	-0.20888	-0.00010188	-0.13188	-6.4326E-05	-0.34077	-0.00016621	487.75060496305395	104.82	0.5052	104.82	104.44	104.94	0					18	9	3	0	0	0	0.053904	1	38451	38451		74.929	28.908	1	1424800			18433	8512	13273	13374	18048	18048					-0.0009080548219344564
GTAGLLEQW	9	Unmodified	_GTAGLLEQW_					0	0	0		ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	MULTI-MSMS	A375_MHC_IP_R2	2	974.7785034179688	1	974.494172	973.486896	0.0049626	4.836E-06	-0.11997	-0.00011691	-0.11501	-0.00011208	974.494026443306	103.95	0.45425	104.71	104.45	104.9	0.76428					11	8	2	0	0	0	0.0096896	1	39361	39361		110.67	25.318	1	1815900			18434	8512	13273	13374	18049	18049					-0.0009080548219344564
GTAGLLEQW	9	Unmodified	_GTAGLLEQW_					0	0	0		ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	MULTI-SECPEP	A375_MHC_IP_R2	2	488.15057373046875	2	487.750724	973.486896	-0.53886	-0.00026283	-0.10877	-5.3053E-05	-0.64763	-0.00031588	487.75076309420047	103.97	0.50522	104.73	104.45	104.95	0.7641					22	9	3	0	0	0	0.05755	1	39365	39365		61.357	21.4	1	1655200			18435	8512	13273	13374	18050	18050					-0.0009080548219344564
GTAGLLEQW	9	Unmodified	_GTAGLLEQW_					0	0	0		ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	MULTI-MATCH	A375_MHC_IP_R1	1		1	974.494172	973.486896	0.19102	0.00018615	0.16827	0.00016398	0.35929	0.00035013	974.4942575059798	104.78	0.40437	104.78	104.54	104.94	0	0.035983	9.1861E-05	NaN	110.67	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2141900			18436	8512	13273	13374							-0.0009080548219344564
GTAHIHVVVL	10	Unmodified	_GTAHIHVVVL_					0	0	0		ENSG00000171815|ENST00000306549|PCDHB1	ENSG00000171815|ENST00000306549|PCDHB1	ENSG00000171815|ENST00000306549|PCDHB1	MULTI-SECPEP	A375_MHC_IP_R2	2	523.7103271484375	2	523.311284	1044.60801	-0.55545	-0.00029067	-1.7503	-0.00091594	-2.3057	-0.0012066	523.3103670438439	77.337	0.76246	78.08	77.757	78.52	0.74293					32	14	3	0	0	0	0.72086	1	29319	29319		30.637	5.2372	1	10548000			18437	7642	13274	13375	18051	18051					0.0874944195113585
GTARLIGRET	10	Unmodified	_GTARLIGRET_					0	0	0			REV__ENST00000601629.5_1_19:14804303-14811095:+|nuORF	REV__ENST00000601629.5_1_19:14804303-14811095:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	536.7235717773438	2	537.306729	1072.59891	-1.0133	-0.00054444	2.4967	0.0013415	1.4834	0.00079706	537.3083268081865	66.397	0.71573	67.133	66.729	67.445	0.73631					23	13	3	0	0	0	0.74754	1	25081	25081		22.736	0	1	1917000	+		18438	20193	13275	13376	18052	18052					0.06551048594815256
GTATLNIQW	9	Unmodified	_GTATLNIQW_					0	0	0		nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;ENST00000469534.1_1_2:173352734-173354395:+|nuORF	nc|ENSG00000091409|P23229-4|ITGA6	nc|ENSG00000091409|P23229-4|ITGA6	MULTI-MSMS	A375_MHC_IP_R1	1	502.6640930175781	2	502.263999	1002.51345	-0.35004	-0.00017581	0.31761	0.00015953	-0.032425	-1.6286E-05	502.2641412139939	104.26	0.814	104.26	103.83	104.64	0					38	15	4	0	0	0	0.0028027	1	38235	38235		139.14	50.235	1	8009500			18439	14499	13276	13377	18053	18053					0.012288834091350509
GTATLNIQW	9	Unmodified	_GTATLNIQW_					0	0	0		nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;ENST00000469534.1_1_2:173352734-173354395:+|nuORF	nc|ENSG00000091409|P23229-4|ITGA6	nc|ENSG00000091409|P23229-4|ITGA6	MULTI-MSMS	A375_MHC_IP_R2	2	502.66351318359375	2	502.263999	1002.51345	-0.59677	-0.00029974	0.3482	0.00017489	-0.24857	-0.00012485	502.26411725023166	103.45	1.1157	104.22	103.79	104.9	0.76428					45	21	3	0	0	0	0.0090323	2	39146	39146;39181		111.29	33.138	1	7063700			18440	14499	13276	13377	18054;18055	18054					0.012288834091350509
GTATLPRNF	9	Unmodified	_GTATLPRNF_					0	0	0		ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1	ENSG00000198561|ENST00000399050|CTNND1	ENSG00000198561|ENST00000399050|CTNND1	MULTI-SECPEP	A375_MHC_IP_R1	1	489.1640625	2	488.764166	975.513779	0.14481	7.0777E-05	-0.28672	-0.00014014	-0.14192	-6.9364E-05	488.76404697364404	45.157	0.7585	45.157	44.878	45.636	0					23	14	2	0	0	0	0.011107	1	15791	15791		89.401	37.771	1	10332000			18441	9283	13277	13378	18056	18056					0.02504303129001073
GTATLPRNF	9	Unmodified	_GTATLPRNF_					0	0	0		ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1	ENSG00000198561|ENST00000399050|CTNND1	ENSG00000198561|ENST00000399050|CTNND1	MULTI-SECPEP	A375_MHC_IP_R2	2	489.1639099121094	2	488.764166	975.513779	-0.55127	-0.00026944	-0.095104	-4.6484E-05	-0.64638	-0.00031593	488.76411774959405	44.394	0.76161	45.163	44.833	45.594	0.7691					24	14	2	0	0	0	0.025235	1	16533	16533		96.111	48.362	1	13812000			18442	9283	13277	13378	18057	18057					0.02504303129001073
GTATSQRFF	9	Unmodified	_GTATSQRFF_					0	0	0		ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	MULTI-SECPEP	A375_MHC_IP_R1	1	508.15338134765625	2	507.753798	1013.49304	-0.046125	-2.342E-05	-0.64079	-0.00032536	-0.68691	-0.00034878	507.7535980871679	44.497	0.71452	44.497	44.113	44.827	0					27	13	3	0	0	0	0.05217	1	15490	15490		70.332	39.695	1	9055800			18443	6949	13278	13379	18058	18058					-0.013162872506654821
GTATVAKTPW	10	Unmodified	_GTATVAKTPW_					0	0	0			REV__ENST00000521072.6_2_6:109721262-109740422:-|nuORF	REV__ENST00000521072.6_2_6:109721262-109740422:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	515.6652221679688	2	516.279649	1030.54475	-0.49063	-0.0002533	-0.16342	-8.4369E-05	-0.65404	-0.00033767	516.2798229942865	63.402	0.35591	63.402	63.173	63.529	0					8	6	2	0	0	0	0.87043	1	22875	22875		4.1895	0	1	1014600	+		18444	25714	13279	13380	18059	18059					0.030694564432451443
GTCHAEWS	8	Unmodified	_GTCHAEWS_					0	0	0		ENST00000441099.5_1_2:3461636-3461915:+|nuORF	ENST00000441099.5_1_2:3461636-3461915:+|nuORF	ENST00000441099.5_1_2:3461636-3461915:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	445.0888671875	2	445.676702	889.338851	-0.43202	-0.00019254	1.0652	0.00047475	0.63322	0.00028221	445.6771625052397	41.674	0.46006	42.449	42.198	42.659	0.77451					13	8	2	0	0	0	0.972	1	15462	15462		9.3474	0	1	1127100			18445	11979	13280	13381	18060	18060					-0.11024440007690828
GTDDGKVGLY	10	Unmodified	_GTDDGKVGLY_					0	0	0		GEMIN5|p.L1343Efs*7|1|0.2|ENSG00000082516|chr5:154891475-154891476|AA/-|frameshift_variant;ENSG00000082516|ENST00000285873|GEMIN5	GEMIN5|p.L1343Efs*7|1|0.2|ENSG00000082516|chr5:154891475-154891476|AA/-|frameshift_variant	GEMIN5|p.L1343Efs*7|1|0.2|ENSG00000082516|chr5:154891475-154891476|AA/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	513.150390625	2	512.750921	1023.48729	-0.68332	-0.00035037	0.4238	0.00021731	-0.25952	-0.00013307	512.7512249397155	37.909	0.45847	37.909	37.71	38.168	0					19	8	3	0	0	0	0.042457	1	12857	12857		78.06	36.105	1	3351800			18446	1763	13281	13382	18061	18061					-0.023514305529943158
GTDDGRLLEY	10	Unmodified	_GTDDGRLLEY_					0	0	0		ENSG00000101474|ENST00000217456|APMAP;nc|ENSG00000101474|Q9HDC9-2|APMAP	ENSG00000101474|ENST00000217456|APMAP	ENSG00000101474|ENST00000217456|APMAP	MULTI-MSMS	A375_MHC_IP_R1	1	570.1726684570312	2	569.772385	1137.53022	-0.18883	-0.00010759	0.016304	9.2896E-06	-0.17252	-9.8299E-05	569.7724022633596	56.473	0.66074	56.473	56.143	56.804	0					29	12	3	0	0	0	0.061707	1	20195	20195		83.429	29.596	1	13182000			18447	2304	13282	13383	18062	18062					-0.03304660495564349
GTDDGRLLEY	10	Unmodified	_GTDDGRLLEY_					0	0	0		ENSG00000101474|ENST00000217456|APMAP;nc|ENSG00000101474|Q9HDC9-2|APMAP	ENSG00000101474|ENST00000217456|APMAP	ENSG00000101474|ENST00000217456|APMAP	MULTI-SECPEP	A375_MHC_IP_R2	2	570.1723022460938	2	569.772385	1137.53022	-0.44505	-0.00025358	0.67609	0.00038522	0.23104	0.00013164	569.7725682866845	55.768	0.96661	56.518	56.134	57.101	0.75015					38	18	3	0	0	0	0.06997	1	21038	21038		93.938	46.189	1	10579000			18448	2304	13282	13383	18063	18063					-0.03304660495564349
GTDEKFQIT	9	Unmodified	_GTDEKFQIT_					0	0	0		ENSG00000243646|ENST00000290200|IL10RB;ENST00000493295.5_1_21:34640622-34668659:+|nuORF	ENSG00000243646|ENST00000290200|IL10RB	ENSG00000243646|ENST00000290200|IL10RB	MULTI-SECPEP	A375_MHC_IP_R2	2	519.985595703125	2	519.758746	1037.50294	-0.66609	-0.0003462	-0.40592	-0.00021098	-1.072	-0.00055718	519.7583988284583	76.636	0.61008	77.376	77.045	77.655	0.74052					10	7	2	0	0	0	0.53748	1	29119	29119		18.146	2.8979	1	1774100			18449	9809	13283	13384	18064	18064					-0.014311440359733751
GTDELRLLY	9	Unmodified	_GTDELRLLY_					0	0	0		nc|ENSG00000001497|Q9Y4W2-4|LAS1L;nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	MULTI-MSMS	A375_MHC_IP_R1	1	540.7083740234375	2	540.290214	1078.56587	-0.84019	-0.00045395	0.23915	0.00012921	-0.60104	-0.00032474	540.2904165384844	85.229	1.8316	85.229	84.494	86.325	0					111	35	7	0	0	0	0.0096896	2	31319	31319;31352		110.67	51.996	1	123340000			18450	845	13284	13385	18065;18066	18065					0.02973421752108152
GTDELRLLY	9	Unmodified	_GTDELRLLY_					0	0	0		nc|ENSG00000001497|Q9Y4W2-4|LAS1L;nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	MULTI-MSMS	A375_MHC_IP_R2	2	540.68994140625	2	540.290214	1078.56587	-0.75202	-0.00040631	0.32891	0.0001777	-0.42312	-0.00022861	540.290357027001	84.307	1.7846	85.047	84.458	86.242	0.73962					92	34	4	0	0	0	0.0098183	1	31970	31970		114.65	55.97	1	127500000			18451	845	13284	13385	18067	18067					0.02973421752108152
GTDERAPRCL	10	Unmodified	_GTDERAPRCL_					0	0	0		ENST00000326005.10_1_15:64980692-64980890:-|nuORF	ENST00000326005.10_1_15:64980692-64980890:-|nuORF	ENST00000326005.10_1_15:64980692-64980890:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	558.6338500976562	2	559.274572	1116.53459	-0.5453	-0.00030497	-0.52569	-0.00029401	-1.071	-0.00059898	559.2741335493774	53.384	0.35614	53.384	53.199	53.555	0					11	6	2	0	0	0	0.91556	1	18968	18968		10.074	5.3179	1	791040			18452	10727	13285	13386	18068	18068					-0.01901474553665139
GTDGGRYDVY	10	Unmodified	_GTDGGRYDVY_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-SECPEP	A375_MHC_IP_R1	1	552.1434936523438	2	551.743628	1101.4727	-0.77705	-0.00042873	0.41487	0.0002289	-0.36218	-0.00019983	551.7437315784683	32.523	0.8617	32.523	32.127	32.989	0					60	16	5	0	0	0	0.24526	1	10491	10491		67.081	43.291	1	87708000			18453	2747	13286	13387	18069	18069					-0.07397502701132908
GTDGGRYDVY	10	Unmodified	_GTDGGRYDVY_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1431884765625	2	551.743628	1101.4727	-0.79165	-0.00043679	0.4157	0.00022936	-0.37595	-0.00020743	551.7437208125135	31.887	1.3195	32.624	32.249	33.569	0.73691					67	25	6	0	0	0	0.022742	1	11266	11266		107.56	63.791	1	85695000			18454	2747	13286	13387	18070	18070					-0.07397502701132908
GTDGHVHLY	9	Unmodified	_GTDGHVHLY_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MSMS	A375_MHC_IP_R1	1	500.7008361816406	2	499.738148	997.461744	-0.56071	-0.00028021	0.359	0.00017941	-0.20171	-0.0001008	499.7382586759564	27.048	0.80526	27.048	26.728	27.533	0					38	12	4	0	0	0	0.0096264	2	8158	8158;8274		109.63	86.481	1	116970000			18455	3584	13287	13388	18071;18072	18071					-0.0370886028475752
GTDGHVHLY	9	Unmodified	_GTDGHVHLY_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MSMS	A375_MHC_IP_R2	2	500.70050048828125	2	499.738148	997.461744	-0.94347	-0.00047149	0.21424	0.00010706	-0.72924	-0.00036443	499.73821284202376	26.415	1.0187	27.075	26.653	27.671	0.65992					46	19	5	0	0	0	0.018481	1	8902	8902		85.357	60.683	1	76172000			18456	3584	13287	13388	18073	18073					-0.0370886028475752
GTDGQGGTFRY	11	Unmodified	_GTDGQGGTFRY_					0	0	0		ENST00000487931.1_1_1:78444877-78481928:+|nuORF;ENSG00000162616|ENST00000370763|DNAJB4	ENST00000487931.1_1_1:78444877-78481928:+|nuORF	ENST00000487931.1_1_1:78444877-78481928:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	580.11279296875	2	579.762352	1157.51015	-0.39674	-0.00023001	-0.072177	-4.1846E-05	-0.46892	-0.00027186	579.7622707213357	32.86	0.70654	32.86	32.585	33.291	0					38	13	4	0	0	0	2.1171E-11	1	10664	10664		218.93	169.38	1	65635000			18457	6562	13288	13389	18074	18074					-0.062304114354901685
GTDGQGGTFRY	11	Unmodified	_GTDGQGGTFRY_					0	0	0		ENST00000487931.1_1_1:78444877-78481928:+|nuORF;ENSG00000162616|ENST00000370763|DNAJB4	ENST00000487931.1_1_1:78444877-78481928:+|nuORF	ENST00000487931.1_1_1:78444877-78481928:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	580.1619262695312	2	579.762352	1157.51015	-0.29097	-0.00016869	-0.17448	-0.00010116	-0.46545	-0.00026985	579.7622082389178	32.198	0.65851	32.935	32.555	33.213	0.73691					42	12	5	0	0	0	2.9983E-34	2	11391	11342;11391		246.87	182.91	1	70645000			18458	6562	13288	13389	18075;18076	18076					-0.062304114354901685
GTDGYVRVW	9	Unmodified	_GTDGYVRVW_					0	0	0		ENSG00000138073|ENST00000260643|PREB;ENST00000474802.1_1_2:27355436-27356101:-|nuORF;ENST00000468045.5_1_2:27354838-27356101:-|nuORF	ENSG00000138073|ENST00000260643|PREB	ENSG00000138073|ENST00000260643|PREB	MULTI-MSMS	A375_MHC_IP_R1	1	527.1612548828125	2	526.761623	1051.50869	-0.4966	-0.00026159	0.00071553	3.7691E-07	-0.49589	-0.00026121	526.7615741287099	64.02	0.60828	64.02	63.684	64.292	0					31	11	4	0	0	0	0.007896	2	23140	23140;23231		129.77	77.504	1	6396700			18459	4951	13289	13390	18077;18078	18077					-0.015000007336084309
GTDGYVRVW	9	Unmodified	_GTDGYVRVW_					0	0	0		ENSG00000138073|ENST00000260643|PREB;ENST00000474802.1_1_2:27355436-27356101:-|nuORF;ENST00000468045.5_1_2:27354838-27356101:-|nuORF	ENSG00000138073|ENST00000260643|PREB	ENSG00000138073|ENST00000260643|PREB	MULTI-MSMS	A375_MHC_IP_R2	2	526.6870727539062	2	526.761623	1051.50869	-0.40914	-0.00021552	-0.51869	-0.00027322	-0.92783	-0.00048874	526.7613780969443	63.28	0.66138	64.02	63.682	64.344	0.74022					26	12	3	0	0	0	0.029064	1	23940	23940		75.761	37.787	1	4901600			18460	4951	13289	13390	18079	18079					-0.015000007336084309
GTDKQNSTLRY	11	Unmodified	_GTDKQNSTLRY_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant;HMCN1|p.P2051Lfs*3|1|0.45|ENSG00000143341|chr1:186039851-186039861|CTGTTTCTAGT/-|frameshift_variant;ENST00000485744.5_1_1:185931700-185962449:+|nuORF;nc|ENSG00000143341|Q96RW7-3|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	A375_MHC_IP_R1	1	428.5645446777344	3	428.217719	1281.63133	0.027266	1.1676E-05	-1.139	-0.00048774	-1.1117	-0.00047607	428.2175274021934	20.841	1.4751	20.841	20.03	21.505	0					82	28	5	0	0	0	0.73582	1	5544	5544		3.3557	0.62053	1	12095000			18461	5371	13290	13391	18080	18080					0.0017779120714749297
GTDKTLRTW	9	Unmodified	_GTDKTLRTW_					0	0	0		ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	MULTI-SECPEP	A375_MHC_IP_R1	1	360.2611083984375	3	359.861096	1076.56146	0.12917	4.6482E-05	-0.14997	-5.397E-05	-0.020808	-7.4879E-06	359.86103603798426	28.369	0.80791	28.369	27.937	28.745	0					48	15	4	0	0	0	0.011418	1	8725	8725		115.06	79.979	1	49451000			18462	3033	13291	13392	18081	18081					0.026239573292059504
GTDKTLRTW	9	Unmodified	_GTDKTLRTW_					0	0	0		ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	MULTI-MSMS	A375_MHC_IP_R2	2	360.588623046875	3	359.861096	1076.56146	-0.19178	-6.9015E-05	0.14803	5.3271E-05	-0.04375	-1.5744E-05	359.86113186273946	27.697	0.76075	28.375	27.945	28.706	0.67857					40	14	4	0	0	0	0.0090499	1	9591	9591		101.54	73.049	1	50765000			18463	3033	13291	13392	18082	18082					0.026239573292059504
GTDKTLRTW	9	Unmodified	_GTDKTLRTW_					0	0	0		ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	MULTI-SECPEP	A375_MHC_IP_R2	2	539.6871948242188	2	539.288005	1076.56146	-0.84882	-0.00045776	-0.47357	-0.00025539	-1.3224	-0.00071315	539.2875682644225	27.698	0.70944	28.376	28.098	28.808	0.67857					25	13	3	0	0	0	0.011309	1	9501	9501		132.13	88.153	1	16902000			18464	3033	13291	13392	18083	18083					0.026239573292059504
GTDLSIFKY	9	Unmodified	_GTDLSIFKY_					0	0	0		ENST00000441602.5_1_7:92883193-92979232:+|nuORF;nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000471188.5_1_7:92887656-92969983:+|nuORF	ENST00000441602.5_1_7:92883193-92979232:+|nuORF	ENST00000441602.5_1_7:92883193-92979232:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	522.6739501953125	2	522.274032	1042.53351	-0.70745	-0.00036948	-0.14345	-7.4918E-05	-0.8509	-0.0004444	522.2739775810498	86.096	0.70956	86.096	85.717	86.426	0					27	13	3	0	0	0	0.056023	1	31563	31563		85.642	51.539	1	9909400			18465	869	13292	13393	18084	18084					0.01394634349117041
GTDLSIFKY	9	Unmodified	_GTDLSIFKY_					0	0	0		ENST00000441602.5_1_7:92883193-92979232:+|nuORF;nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000471188.5_1_7:92887656-92969983:+|nuORF	ENST00000441602.5_1_7:92883193-92979232:+|nuORF	ENST00000441602.5_1_7:92883193-92979232:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	522.1910400390625	2	522.274032	1042.53351	-0.43202	-0.00022563	-1.1761	-0.00061424	-1.6081	-0.00083987	522.2737636567236	85.357	1.6277	86.093	84.813	86.441	0.73601					74	31	4	0	0	0	0.03109	1	32395	32395		82.529	57.13	1	9437500			18466	869	13292	13393	18085	18085					0.01394634349117041
GTDMEPSLY	9	Oxidation (M)	_GTDM(Oxidation (M))EPSLY_		GTDM(1)EPSLY		GTDM(50)EPSLY	0	0	1		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-MSMS	A375_MHC_IP_R1	1	1030.293212890625	1	1028.4241	1027.41683	0.22473	0.00023112	-0.24738	-0.00025442	-0.022653	-2.3297E-05	1028.424006536493	54.681	1.0149	54.681	54.213	55.228	0					47	19	3	0	0	0	0.10411	1	19627	19627		49.933	29.479	1	15154000			18467	2330	13293	13394	18086	18086		97			-0.09578471932968569
GTDMEPSLY	9	Oxidation (M)	_GTDM(Oxidation (M))EPSLY_		GTDM(1)EPSLY		GTDM(46)EPSLY	0	0	1		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-SECPEP	A375_MHC_IP_R1	1	514.9252319335938	2	514.71569	1027.41683	-0.46541	-0.00023955	0.25073	0.00012905	-0.21468	-0.0001105	514.7157660869868	54.721	1.0646	54.721	54.163	55.228	0					47	20	3	0	0	0	0.1277	1	19569	19569		46.021	19.68	1	11213000			18468	2330	13293	13394	18087	18087		97			-0.09578471932968569
GTDMEPSLY	9	Oxidation (M)	_GTDM(Oxidation (M))EPSLY_		GTDM(1)EPSLY		GTDM(71)EPSLY	0	0	1		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-SECPEP	A375_MHC_IP_R1	1	1028.9765625	1	1028.4241	1027.41683	0.15309	0.00015744	-0.08128	-8.3591E-05	0.071805	7.3846E-05	1028.4238958539324	57.749	1.8803	57.749	57.263	59.143	0					47	36	2	0	0	0	0.096726	1	20919	20919		71.134	44.25	1	2746600			18469	2330	13293	13394	18088	18088		97			-0.09578471932968569
GTDMEPSLY	9	Oxidation (M)	_GTDM(Oxidation (M))EPSLY_					0	0	1		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-MATCH	A375_MHC_IP_R2	2		1	1028.4241	1027.41683	-0.31103	-0.00031987	-0.25889	-0.00026625	-0.56992	-0.00058612	1028.4239758256033	54.051	1.0174	54.802	54.353	55.371	0.75105	0.060163	-6.0686E-06	NaN	49.933	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10824000			18470	2330	13293	13394				97			-0.09578471932968569
GTDNDQRHET	10	Unmodified	_GTDNDQRHET_					0	0	0			REV__ENSG00000178105|ENST00000322536|DDX10	REV__ENSG00000178105|ENST00000322536|DDX10	MULTI-MSMS	A375_MHC_IP_R2	2	587.1509399414062	2	586.749973	1171.48539	-0.57009	-0.0003345	1.0974	0.00064391	0.52733	0.00030941	586.7509698472747	32.188	0.45794	32.924	32.704	33.162	0.73691					17	8	3	0	0	0	0.57505	1	11454	11454		22.736	3.4793	1	3324200	+		18471	21487	13294	13395	18089	18089					-0.09349091308899915
GTDNLSFQPLR	11	Unmodified	_GTDNLSFQPLR_					0	0	0		tr|U7SYR5|U7SYR5_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00888PE=3SV=1	tr|U7SYR5|U7SYR5_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00888PE=3SV=1	tr|U7SYR5|U7SYR5_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00888PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	623.65283203125	2	624.322576	1246.6306	-0.92712	-0.00057882	0.34045	0.00021255	-0.58667	-0.00036627	624.3228442151977	54.911	1.2701	55.662	55.118	56.388	0.75075					45	24	4	0	0	0	0.86796	1	20922	20922		26.268	15.444	1	3919600			18472	29842	13295	13396	18090	18090					0.017149965580983917
GTDPATLYC	9	Unmodified	_GTDPATLYC_					0	0	0		ENST00000480412.2_1_X:48933021-48933502:-|nuORF;ENSG00000196998|ENST00000376372|WDR45;nc|ENSG00000196998|Q9Y484-3|WDR45;nc|ENSG00000196998|Q9Y484-2|WDR45;ENST00000502774.1_1_4:154579740-154580577:+|nuORF	ENST00000480412.2_1_X:48933021-48933502:-|nuORF	ENST00000480412.2_1_X:48933021-48933502:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	940.4725341796875	1	940.408059	939.400783	-0.28066	-0.00026394	0.38067	0.00035799	0.10001	9.4047E-05	940.408496326655	67.047	0.56277	67.047	66.734	67.297	0					16	10	2	0	0	0	0.077132	1	24238	24238		54.774	31.625	1	1767500			18473	9100	13296	13397	18091	18091					-0.07134133379213381
GTDPATLYC	9	Unmodified	_GTDPATLYC_					0	0	0		ENST00000480412.2_1_X:48933021-48933502:-|nuORF;ENSG00000196998|ENST00000376372|WDR45;nc|ENSG00000196998|Q9Y484-3|WDR45;nc|ENSG00000196998|Q9Y484-2|WDR45;ENST00000502774.1_1_4:154579740-154580577:+|nuORF	ENST00000480412.2_1_X:48933021-48933502:-|nuORF	ENST00000480412.2_1_X:48933021-48933502:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	940.408059	939.400783	-0.35925	-0.00033784	0.49108	0.00046182	0.13183	0.00012398	940.4084232517945	66.393	0.61337	67.129	66.831	67.445	0.73631	0.041021	6.0784E-05	NaN	54.774	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1628500			18474	9100	13296	13397							-0.07134133379213381
GTDPLVLAV	9	Unmodified	_GTDPLVLAV_					0	0	0		nc|ENSG00000196526|Q8N556|AFAP1;ENSG00000196526|ENST00000420658|AFAP1	nc|ENSG00000196526|Q8N556|AFAP1	nc|ENSG00000196526|Q8N556|AFAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	883.9976196289062	1	884.50876	883.501483	-0.10113	-8.945E-05	-0.004913	-4.3456E-06	-0.10604	-9.3795E-05	884.5086316631304	110.74	0.51138	110.74	110.49	111	0					15	9	2	0	0	0	0.3607	1	40680	40680		42.095	9.9776	1	3057600			18475	9053	13297	13398	18092	18092					0.055072666659384595
GTDPQLLLY	9	Unmodified	_GTDPQLLLY_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R1	1	510.2189636230469	2	510.274032	1018.53351	-0.322	-0.00016431	-0.17656	-9.0095E-05	-0.49856	-0.0002544	510.27396106575895	105.48	4.1225	105.48	104.89	109.02	0					228	80	5	0	0	0	0.004328	5	38881	38653;38851;38881;39055;39256		136.33	71.098	1	780440000			18476	7807	13298	13399	18093;18094;18095;18096;18097	18095					0.024986343491036678
GTDPQLLLY	9	Unmodified	_GTDPQLLLY_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R1	1	1021.6760864257812	1	1019.54079	1018.53351	0.30244	0.00030835	-0.64536	-0.00065797	-0.34292	-0.00034962	1019.5401782212026	105.53	5.393	105.53	104.74	110.14	0					282	105	6	0	0	0	0.2487	1	38864	38864		34.402	3.7652	1	4663000000			18477	7807	13298	13399	18098	18098					0.024986343491036678
GTDPQLLLY	9	Unmodified	_GTDPQLLLY_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R2	2	510.2179870605469	2	510.274032	1018.53351	-0.68848	-0.00035131	-0.22992	-0.00011732	-0.91839	-0.00046863	510.27395523699056	104.72	3.8699	105.49	105.05	108.92	0.76308					241	75	6	0	0	0	0.0011619	5	39713	39519;39713;39731;39933;40131		152.41	91.055	1	973940000			18478	7807	13298	13399	18099;18100;18101;18102;18103	18100					0.024986343491036678
GTDPTPQHY	9	Unmodified	_GTDPTPQHY_					0	0	0		ENST00000521361.5_1_6:112040873-112041254:-|nuORF;nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN	ENST00000521361.5_1_6:112040873-112041254:-|nuORF	ENST00000521361.5_1_6:112040873-112041254:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	508.6273498535156	2	508.227613	1014.44067	-0.25379	-0.00012898	-0.31552	-0.00016035	-0.5693	-0.00028934	508.2274195533818	20.716	0.56202	20.716	20.435	20.997	0					24	10	3	0	0	0	0.056023	1	5328	5328		66.457	30.33	1	8622000			18479	986	13299	13400	18104	18104					-0.06596870384282738
GTDPTPQHY	9	Unmodified	_GTDPTPQHY_					0	0	0		ENST00000521361.5_1_6:112040873-112041254:-|nuORF;nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN	ENST00000521361.5_1_6:112040873-112041254:-|nuORF	ENST00000521361.5_1_6:112040873-112041254:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	508.62725830078125	2	508.227613	1014.44067	-1.028	-0.00052243	-0.021648	-1.1002E-05	-1.0496	-0.00053344	508.2275891611719	19.357	0.45686	19.96	19.733	20.19	0.60308					18	8	3	0	0	0	0.015701	1	5932	5932		88.954	39.021	1	4881500			18480	986	13299	13400	18105	18105					-0.06596870384282738
GTDQFGNKY	9	Unmodified	_GTDQFGNKY_					0	0	0		NDUFAF2|p.Y32_K39dup|1|0.07|ENSG00000164182|chr5:60945343-60945344|-/ACAAATACTACTACATCCCGCAGT|inframe_insertion;ENSG00000164182|ENST00000296597|NDUFAF2	NDUFAF2|p.Y32_K39dup|1|0.07|ENSG00000164182|chr5:60945343-60945344|-/ACAAATACTACTACATCCCGCAGT|inframe_insertion	NDUFAF2|p.Y32_K39dup|1|0.07|ENSG00000164182|chr5:60945343-60945344|-/ACAAATACTACTACATCCCGCAGT|inframe_insertion	MULTI-MSMS	A375_MHC_IP_R2	2	515.634765625	2	515.235439	1028.45632	-0.8269	-0.00042605	0.25192	0.0001298	-0.57498	-0.00029625	515.2352638693377	41.66	0.46006	42.434	42.198	42.659	0.77451					13	8	2	0	0	0	0.35581	1	15478	15478		26.884	2.8631	1	2063600			18481	6797	13300	13401	18106	18106					-0.05676583867216323
GTDQFGNKY	9	Unmodified	_GTDQFGNKY_					0	0	0		NDUFAF2|p.Y32_K39dup|1|0.07|ENSG00000164182|chr5:60945343-60945344|-/ACAAATACTACTACATCCCGCAGT|inframe_insertion;ENSG00000164182|ENST00000296597|NDUFAF2	NDUFAF2|p.Y32_K39dup|1|0.07|ENSG00000164182|chr5:60945343-60945344|-/ACAAATACTACTACATCCCGCAGT|inframe_insertion	NDUFAF2|p.Y32_K39dup|1|0.07|ENSG00000164182|chr5:60945343-60945344|-/ACAAATACTACTACATCCCGCAGT|inframe_insertion	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	515.235439	1028.45632	-0.8269	-0.00042605	0.25192	0.0001298	-0.57498	-0.00029625	515.2352638693377	41.66	0.46006	42.434	42.198	42.659	0.77451	0.0090103	-0.00011893	NaN	26.884	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2063600			18482	6797	13300	13401							-0.05676583867216323
GTDRNAYVW	9	Unmodified	_GTDRNAYVW_					0	0	0		ENST00000484600.6_1_7:98983337-98987636:+|nuORF;ENST00000484375.5_1_7:98972330-98988614:+|nuORF;ENSG00000130429|ENST00000646101|ARPC1B	ENST00000484600.6_1_7:98983337-98987636:+|nuORF	ENST00000484600.6_1_7:98983337-98987636:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	541.65625	2	541.256705	1080.49886	-0.48234	-0.00026107	-0.22802	-0.00012342	-0.71036	-0.00038449	541.2565578540178	49.973	1.1735	49.973	49.54	50.713	0					53	22	4	0	0	0	0.12771	3	17610	17574;17610;17771		45.7	11.298	1	83152000			18483	4244	13301	13402	18107;18108;18109	18108					-0.03817188739026278
GTDRNAYVW	9	Unmodified	_GTDRNAYVW_					0	0	0		ENST00000484600.6_1_7:98983337-98987636:+|nuORF;ENST00000484375.5_1_7:98972330-98988614:+|nuORF;ENSG00000130429|ENST00000646101|ARPC1B	ENST00000484600.6_1_7:98983337-98987636:+|nuORF	ENST00000484600.6_1_7:98983337-98987636:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	541.6560668945312	2	541.256705	1080.49886	-1.0537	-0.0005703	0.16769	9.0761E-05	-0.88597	-0.00047954	541.2567693245894	49.163	1.4229	49.92	49.485	50.908	0.75736					62	27	4	0	0	0	0.19747	3	18392	18376;18392;18568		38.176	6.5945	1	84286000			18484	4244	13301	13402	18110;18111;18112	18111					-0.03817188739026278
GTDRRLNVW	9	Unmodified	_GTDRRLNVW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-4|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-SECPEP	A375_MHC_IP_R1	1	373.2685852050781	3	372.868473	1115.58359	0.087371	3.2578E-05	0.16181	6.0333E-05	0.24918	9.2911E-05	372.86853356751504	39.693	0.60746	39.693	39.34	39.948	0					29	11	3	0	0	0	0.46121	1	13580	13580		32.037	11.623	1	20127000			18485	6544	13302	13403	18113	18113					0.03042181797604826
GTDRRLNVW	9	Unmodified	_GTDRRLNVW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-4|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-SECPEP	A375_MHC_IP_R2	2	373.2681884765625	3	372.868473	1115.58359	0.13614	5.0762E-05	0.61987	0.00023113	0.75601	0.00028189	372.86832759908054	38.79	0.81659	39.564	39.25	40.067	0.77451					62	15	6	0	0	0	0.55534	1	14271	14271		26.021	6.3947	1	21061000			18486	6544	13302	13403	18114	18114					0.03042181797604826
GTDSDEDNGPG	11	Unmodified	_GTDSDEDNGPG_					0	0	0			REV__ENSG00000189431|ENST00000529419|RASSF10	REV__ENSG00000189431|ENST00000529419|RASSF10	MSMS	A375_MHC_IP_R1	1	532.2186279296875	2	532.194165	1062.37378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.754	1	77.754	77.254	78.254	0								0	0	0	0.16051	1	28373	28373		13.906	5.7505	1		+		18487	22153	13303	13404	18115	18115					-0.15491570456697445
GTDTGVVQY	9	Unmodified	_GTDTGVVQY_					0	0	0		ENSG00000157796|ENST00000399820|WDR19;ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENSG00000157796|ENST00000399820|WDR19	ENSG00000157796|ENST00000399820|WDR19	MULTI-MSMS	A375_MHC_IP_R1	1	470.62432861328125	2	470.224539	938.434526	-0.075097	-3.5312E-05	0.0071021	3.3396E-06	-0.067995	-3.1973E-05	470.224466171891	45.48	0.55493	45.48	45.132	45.687	0					23	10	3	0	0	0	0.0090669	1	15874	15874		100.37	29.238	1	6143300			18488	6266	13304	13405	18116	18116					-0.03715388615808024
GTDTGVVQY	9	Unmodified	_GTDTGVVQY_					0	0	0		ENSG00000157796|ENST00000399820|WDR19;ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENSG00000157796|ENST00000399820|WDR19	ENSG00000157796|ENST00000399820|WDR19	MULTI-MSMS	A375_MHC_IP_R2	2	470.62408447265625	2	470.224539	938.434526	-0.73071	-0.0003436	0.12765	6.0026E-05	-0.60306	-0.00028357	470.2244838753009	44.754	0.66215	45.523	45.239	45.901	0.76909					26	12	3	0	0	0	0.0095277	1	16708	16708		108	53.223	1	5943700			18489	6266	13304	13405	18117	18117					-0.03715388615808024
GTDVLGEFQK	10	Unmodified	_GTDVLGEFQK_					0	0	0			REV__nc|ENSG809|P63128|ERVK-9_pol	REV__nc|ENSG809|P63128|ERVK-9_pol	MULTI-SECPEP	A375_MHC_IP_R1	1	547.679443359375	2	547.279846	1092.54514	-0.74007	-0.00040503	-0.91204	-0.00049914	-1.6521	-0.00090417	547.278763077211	85.235	1.4282	85.235	84.442	85.87	0					36	27	3	0	0	0	0.56504	1	31221	31221		34.402	11.665	1	3395900	+		18490	27569	13305	13406	18118	18118					0.002568313724395921
GTDVSICTYV	10	Unmodified	_GTDVSICTYV_					0	0	0			REV__ENST00000541901.5_1_6:161519319-161529903:+|nuORF	REV__ENST00000541901.5_1_6:161519319-161529903:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	529.6471557617188	2	529.247157	1056.47976	-0.50455	-0.00026703	0.32921	0.00017423	-0.17535	-9.2801E-05	529.2473056004168	104.68	1.8326	105.44	105.11	106.94	0.76308					84	35	4	0	0	0	0.23156	1	39770	39770		46.021	2.1627	1	88991000	+		18491	16837	13306	13407	18119	18119					-0.04621906144939203
GTDWGEKGYY	10	Unmodified	_GTDWGEKGYY_					0	0	0		ENSG00000174080|ENST00000310325|CTSF;ENST00000527141.5_1_11:66331406-66331633:-|nuORF	ENSG00000174080|ENST00000310325|CTSF	ENSG00000174080|ENST00000310325|CTSF	MULTI-SECPEP	A375_MHC_IP_R1	1	588.6536865234375	2	588.253828	1174.4931	-0.37332	-0.00021961	0.58799	0.00034589	0.21467	0.00012628	588.2541622737834	46.549	1.4757	46.549	45.941	47.416	0					79	28	4	0	0	0	0.0002568	1	16429	16429		195.45	195.45	1	73088000			18492	7853	13307	13408	18120	18120					-0.08716332041331043
GTDWGEKGYY	10	Unmodified	_GTDWGEKGYY_					0	0	0		ENSG00000174080|ENST00000310325|CTSF;ENST00000527141.5_1_11:66331406-66331633:-|nuORF	ENSG00000174080|ENST00000310325|CTSF	ENSG00000174080|ENST00000310325|CTSF	MULTI-MSMS	A375_MHC_IP_R2	2	589.5803833007812	2	588.253828	1174.4931	-0.52594	-0.00030938	0.77117	0.00045364	0.24523	0.00014426	588.2542454367868	46.013	1.3659	46.779	45.947	47.313	0.76518					80	26	4	0	0	0	0.32528	1	17298	17298		38.615	19.358	1	78376000			18493	7853	13307	13408	18121	18121					-0.08716332041331043
GTDWGEKGYYY	11	Unmodified	_GTDWGEKGYYY_					0	0	0		ENSG00000174080|ENST00000310325|CTSF;ENST00000527141.5_1_11:66331406-66331633:-|nuORF	ENSG00000174080|ENST00000310325|CTSF	ENSG00000174080|ENST00000310325|CTSF	MULTI-SECPEP	A375_MHC_IP_R1	1	670.1847534179688	2	669.785492	1337.55643	-0.62569	-0.00041908	0.095613	6.404E-05	-0.53008	-0.00035504	669.7853908793096	59.228	0.55993	59.228	58.938	59.498	0					19	10	2	0	0	0	0.029164	1	21271	21271		105.35	76.851	1	4067100			18494	7853	13308	13409	18122	18122					-0.09884391324089847
GTDWGEKGYYY	11	Unmodified	_GTDWGEKGYYY_					0	0	0		ENSG00000174080|ENST00000310325|CTSF;ENST00000527141.5_1_11:66331406-66331633:-|nuORF	ENSG00000174080|ENST00000310325|CTSF	ENSG00000174080|ENST00000310325|CTSF	MULTI-MATCH	A375_MHC_IP_R2	2		2	669.785492	1337.55643	-1.1132	-0.00074561	0.12286	8.2293E-05	-0.99034	-0.00066332	669.7854621155524	58.716	0.55787	59.464	59.134	59.691	0.74714	0.11772	1.1928E-05	NaN	105.35	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4223000			18495	7853	13308	13409							-0.09884391324089847
GTDYCSVVTI	10	Unmodified	_GTDYCSVVTI_					0	0	0		POT1|p.K39E|1|0.33|ENSG00000128513|chr7:124892275-124892275|T/C|missense_variant;nc|ENSG00000128513|Q9NUX5-2|POT1;ENSG00000128513|ENST00000357628|POT1	POT1|p.K39E|1|0.33|ENSG00000128513|chr7:124892275-124892275|T/C|missense_variant	POT1|p.K39E|1|0.33|ENSG00000128513|chr7:124892275-124892275|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	529.6469116210938	2	529.247157	1056.47976	-0.43347	-0.00022941	0.62282	0.00032963	0.18935	0.00010021	529.2474777079308	105.59	1.222	105.59	105.15	106.37	0					80	23	4	0	0	0	0.25271	2	38670	38670;38872		43.858	2.0187	1	85016000			18496	4140	13309	13410	18123;18124	18123					-0.046219061449164656
GTDYCSVVTI	10	Unmodified	_GTDYCSVVTI_					0	0	0		POT1|p.K39E|1|0.33|ENSG00000128513|chr7:124892275-124892275|T/C|missense_variant;nc|ENSG00000128513|Q9NUX5-2|POT1;ENSG00000128513|ENST00000357628|POT1	POT1|p.K39E|1|0.33|ENSG00000128513|chr7:124892275-124892275|T/C|missense_variant	POT1|p.K39E|1|0.33|ENSG00000128513|chr7:124892275-124892275|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	529.6468505859375	2	529.247157	1056.47976	-0.50455	-0.00026703	0.32921	0.00017423	-0.17535	-9.2801E-05	529.2473056004168	104.68	1.8326	105.44	105.11	106.94	0.76308					84	35	4	0	0	0	0.25271	1	39551	39551		43.858	5.8843	1	88991000			18497	4140	13309	13410	18125	18125					-0.046219061449164656
GTDYCSVVTI	10	Unmodified	_GTDYCSVVTI_					0	0	0		POT1|p.K39E|1|0.33|ENSG00000128513|chr7:124892275-124892275|T/C|missense_variant;nc|ENSG00000128513|Q9NUX5-2|POT1;ENSG00000128513|ENST00000357628|POT1	POT1|p.K39E|1|0.33|ENSG00000128513|chr7:124892275-124892275|T/C|missense_variant	POT1|p.K39E|1|0.33|ENSG00000128513|chr7:124892275-124892275|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	353.567138671875	3	353.167197	1056.47976	-0.16787	-5.9287E-05	0.23105	8.16E-05	0.06318	2.2313E-05	353.16730003869026	104.65	2.0845	105.41	104.45	106.53	0.76308					102	40	4	0	0	0	0.25271	1	39565	39565		30.703	0	1	20527000			18498	4140	13309	13410	18126	18126					-0.046219061449164656
GTEAHMAESML	11	Unmodified	_GTEAHMAESML_					0	0	0		ENST00000528055.1_1_11:83501400-83501673:-|nuORF	ENST00000528055.1_1_11:83501400-83501673:-|nuORF	ENST00000528055.1_1_11:83501400-83501673:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	588.1378784179688	2	588.754824	1175.49509	-0.048249	-2.8407E-05	-0.40584	-0.00023894	-0.45409	-0.00026735	588.7544375538992	21.479	0.2544	21.479	21.301	21.555	0					10	4	3	0	0	0	0.95991	1	5656	5656		13.042	0	1	1808700			18499	13112	13310	13411	18127	18127					-0.08563362619383952
GTEFGPGTAY	10	Unmodified	_GTEFGPGTAY_					0	0	0		nc|ENSG00000097033|Q9Y371-3|SH3GLB1;ENSG00000097033|ENST00000370558|SH3GLB1;nc|ENSG00000097033|Q9Y371-2|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	MULTI-SECPEP	A375_MHC_IP_R1	1	500.6243896484375	2	500.224539	998.434526	-0.40326	-0.00020172	0.26686	0.00013349	-0.1364	-6.8232E-05	500.22457465430404	60.791	0.71199	60.791	60.464	61.176	0					27	13	4	0	0	0	0.099365	1	21868	21868		71.922	46.523	1	5444000			18500	2066	13311	13412	18128	18128					-0.06475388615808697
GTEFGPGTAY	10	Unmodified	_GTEFGPGTAY_					0	0	0		nc|ENSG00000097033|Q9Y371-3|SH3GLB1;ENSG00000097033|ENST00000370558|SH3GLB1;nc|ENSG00000097033|Q9Y371-2|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	MULTI-SECPEP	A375_MHC_IP_R1	1	1000.0625	1	999.441802	998.434526	0.18137	0.00018127	-0.44092	-0.00044067	-0.25955	-0.0002594	999.4412134198442	60.808	0.55973	60.808	60.566	61.126	0					23	10	3	0	0	0	0.039477	1	21925	21925		139.14	93.439	1	4691400			18501	2066	13311	13412	18129	18129					-0.06475388615808697
GTEFGPGTAY	10	Unmodified	_GTEFGPGTAY_					0	0	0		nc|ENSG00000097033|Q9Y371-3|SH3GLB1;ENSG00000097033|ENST00000370558|SH3GLB1;nc|ENSG00000097033|Q9Y371-2|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	MULTI-MSMS	A375_MHC_IP_R2	2	500.624267578125	2	500.224539	998.434526	-0.89654	-0.00044847	0.27103	0.00013558	-0.62551	-0.0003129	500.2245925889849	60.143	0.76313	60.89	60.553	61.316	0.74714					31	14	3	0	0	0	0.36703	3	22722	22722;22727;22901		36.127	16.87	1	7604100			18502	2066	13311	13412	18130;18131;18132	18130					-0.06475388615808697
GTEFGPGTAY	10	Unmodified	_GTEFGPGTAY_					0	0	0		nc|ENSG00000097033|Q9Y371-3|SH3GLB1;ENSG00000097033|ENST00000370558|SH3GLB1;nc|ENSG00000097033|Q9Y371-2|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	MULTI-MATCH	A375_MHC_IP_R2	2		1	999.441802	998.434526	-0.31436	-0.00031418	0.12931	0.00012924	-0.18505	-0.00018495	999.4418710154932	60.148	0.45869	60.895	60.704	61.162	0.74714	0.043389	0.00036702	NaN	139.14	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4587100			18503	2066	13311	13412							-0.06475388615808697
GTEIANTLY	9	Unmodified	_GTEIANTLY_					0	0	0		ENST00000461361.5_1_3:45016905-45052828:+|nuORF;ENSG00000075914|ENST00000265564|EXOSC7;ENST00000481405.1_1_3:45017815-45077021:+|nuORF	ENST00000461361.5_1_3:45016905-45052828:+|nuORF	ENST00000461361.5_1_3:45016905-45052828:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	981.8890991210938	1	981.488753	980.481476	0.45533	0.0004469	0.22879	0.00022455	0.68411	0.00067145	981.4889026178274	69.104	0.5576	69.104	68.819	69.377	0					14	10	2	0	0	0	0.0028027	1	25057	25057		139.14	53.866	1	2186500			18504	1625	13312	13413	18133	18133					-0.009545290646542526
GTEIANTLY	9	Unmodified	_GTEIANTLY_					0	0	0		ENST00000461361.5_1_3:45016905-45052828:+|nuORF;ENSG00000075914|ENST00000265564|EXOSC7;ENST00000481405.1_1_3:45017815-45077021:+|nuORF	ENST00000461361.5_1_3:45016905-45052828:+|nuORF	ENST00000461361.5_1_3:45016905-45052828:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	981.488753	980.481476	0.10788	0.00010588	0.27226	0.00026722	0.38014	0.0003731	981.4890938502255	68.36	0.405	69.095	68.867	69.272	0.73511	-0.0040875	1.7533E-05	NaN	139.14	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3206000			18505	1625	13312	13413							-0.009545290646542526
GTEIVTESEY	10	Unmodified	_GTEIVTESEY_					0	0	0		ZNF711|p.T271I|1|0.57|ENSG00000147180|chrX:85265151-85265151|C/T|missense_variant;nc|ENSG00000147180|Q9Y462|ZNF711;nc|ENSG00000147180|Q9Y462-2|ZNF711;ENSG00000147180|ENST00000674551|ZNF711	ZNF711|p.T271I|1|0.57|ENSG00000147180|chrX:85265151-85265151|C/T|missense_variant	ZNF711|p.T271I|1|0.57|ENSG00000147180|chrX:85265151-85265151|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	564.6585083007812	2	564.258776	1126.503	-0.20721	-0.00011692	-0.66476	-0.0003751	-0.87197	-0.00049202	564.2582753040466	106.85	2.6536	106.85	105.76	108.41	0					93	51	5	0	0	0	0.33603	1	39201	39201		37.974	5.6685	1	12846000			18506	5668	13313	13414	18134	18134					-0.05519188826588106
GTEKVGFLY	9	Unmodified	_GTEKVGFLY_					0	0	0		nc|ENSG00000088280|Q8TDY4-3|ASAP3;ENSG00000088280|ENST00000336689|ASAP3	nc|ENSG00000088280|Q8TDY4-3|ASAP3	nc|ENSG00000088280|Q8TDY4-3|ASAP3	MULTI-SECPEP	A375_MHC_IP_R1	1	507.6682434082031	2	507.26875	1012.52295	-0.44283	-0.00022464	-0.36992	-0.00018765	-0.81276	-0.00041229	507.26849422247136	64.644	0.8632	64.644	64.292	65.156	0					34	16	3	0	0	0	0.16764	1	23370	23370		60.074	20.117	1	4182200			18507	1887	13314	13415	18135	18135					0.017186516946594566
GTEKVGFLY	9	Unmodified	_GTEKVGFLY_					0	0	0		nc|ENSG00000088280|Q8TDY4-3|ASAP3;ENSG00000088280|ENST00000336689|ASAP3	nc|ENSG00000088280|Q8TDY4-3|ASAP3	nc|ENSG00000088280|Q8TDY4-3|ASAP3	MULTI-SECPEP	A375_MHC_IP_R2	2	507.6686096191406	2	507.26875	1012.52295	-0.67449	-0.00034215	-0.13147	-6.669E-05	-0.80596	-0.00040884	507.26850451273	63.782	0.71129	64.523	64.139	64.85	0.74022					29	13	4	0	0	0	0.27742	1	24152	24152		29.841	1.3537	1	4463600			18508	1887	13314	13415	18136	18136					0.017186516946594566
GTELGNELFY	10	Unmodified	_GTELGNELFY_					0	0	0		ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	MULTI-MSMS	A375_MHC_IP_R2	2	572.1717529296875	2	571.771854	1141.52915	-0.23874	-0.0001365	-0.21136	-0.00012085	-0.45009	-0.00025735	571.7714286455335	105.32	0.5592	106.08	105.87	106.43	0.76308					26	10	4	0	0	0	0.10503	1	39866	39866		62.573	16.552	1	2035800			18509	4061	13315	13416	18137	18137					-0.035948748644841544
GTEQLIRTGF	10	Unmodified	_GTEQLIRTGF_					0	0	0			REV__chr5:171388006-171405302|113|13.81|0.51|4.77|+|2|NPM1,NPM1|1	REV__chr5:171388006-171405302|113|13.81|0.51|4.77|+|2|NPM1,NPM1|1	MSMS	A375_MHC_IP_R2	2	374.433349609375	3	374.536501	1120.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.414	1	42.189	41.689	42.689	0.77451								0	0	0	0.15539	1	15367	15367		3.3196	0.24738	1		+		18510	15760	13316	13417	18138	18138					0.032202265006844755
GTETRSDFY	9	Unmodified	_GTETRSDFY_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	MULTI-MSMS	A375_MHC_IP_R1	1	538.6378173828125	2	538.238178	1074.4618	-0.96468	-0.00051923	0.36773	0.00019793	-0.59695	-0.0003213	538.2382948228519	30.728	0.50601	30.728	30.503	31.009	0					25	9	3	0	0	0	0.0098859	1	9772	9772		117.76	61.584	1	16078000			18511	3360	13317	13418	18139	18139					-0.07244905075435781
GTETRSDFY	9	Unmodified	_GTETRSDFY_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	MULTI-MSMS	A375_MHC_IP_R2	2	538.637451171875	2	538.238178	1074.4618	-1.0603	-0.00057068	0.17331	9.3282E-05	-0.88696	-0.00047739	538.2382509770578	30.041	0.65927	30.749	30.547	31.206	0.70884					29	12	3	0	0	0	0.014789	1	10527	10527		90.135	42.386	1	10185000			18512	3360	13317	13418	18140	18140					-0.07244905075435781
GTEWRLQQRLL	11	Unmodified	_GTEWRLQQRLL_					0	0	0		ENST00000339995.9_2_11:10830403-10830559:-|nuORF	ENST00000339995.9_2_11:10830403-10830559:-|nuORF	ENST00000339995.9_2_11:10830403-10830559:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	700.7921752929688	2	700.393867	1398.77318	-0.73048	-0.00051162	-0.77058	-0.00053971	-1.5011	-0.0010513	700.3933265805737	80.426	0.55621	81.17	80.86	81.416	0.74474					18	10	2	0	0	0	0.99227	1	30525	30525		2.9952	0	1	5571400			18513	10849	13318	13419	18141	18141					0.08974629020144675
GTFATLSELH	10	Unmodified	_GTFATLSELH_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	A375_MHC_IP_R1	1	538.6734619140625	2	538.274564	1074.53457	-0.97148	-0.00052293	-4.0068	-0.0021567	-4.9782	-0.0026797	538.2717540558349	68.424	1.6756	68.424	67.194	68.869	0					72	32	3	0	0	0	0.011448	1	24660	24660		111.29	73.111	1	18844000			18514	9826	13319	13420	18142	18142					0.0002884871798869426
GTFEYEYSQRW	11	Unmodified	_GTFEYEYSQRW_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-MSMS	A375_MHC_IP_R1	1	734.2249145507812	2	733.322773	1464.63099	-0.38825	-0.00028471	0.016597	1.2171E-05	-0.37165	-0.00027254	733.8243515559135	72.321	0.40548	72.321	72.169	72.575	0					12	7	2	0	0	0	0.48838	1	26332	26332		32.037	29.042	1	2844300			18515	3405	13320	13421	18143	18143					-0.08273628512733922
GTFEYEYSQRW	11	Unmodified	_GTFEYEYSQRW_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-MSMS	A375_MHC_IP_R2	2	733.7213745117188	2	733.322773	1464.63099	-1.1097	-0.00081376	-0.48079	-0.00035257	-1.5905	-0.0011663	733.3225136705332	71.828	0.5564	72.562	72.213	72.77	0.73421					17	10	2	0	0	0	0.011476	1	27274	27274		92.201	79.159	1	3356600			18516	3405	13320	13421	18144	18144					-0.08273628512733922
GTFGFNTTC	9	Unmodified	_GTFGFNTTC_					0	0	0		SELP|p.H658Y|1|0.15|ENSG00000174175|chr1:169596054-169596054|G/A|missense_variant;ENSG00000174175|ENST00000263686|SELP	SELP|p.H658Y|1|0.15|ENSG00000174175|chr1:169596054-169596054|G/A|missense_variant	SELP|p.H658Y|1|0.15|ENSG00000174175|chr1:169596054-169596054|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	474.5996398925781	2	474.20001	946.385467	-0.56084	-0.00026595	0.10776	5.1101E-05	-0.45307	-0.00021485	474.1999039865716	77.448	0.50864	78.191	77.908	78.416	0.74293					13	9	2	0	0	0	0.46465	1	29443	29443		21.537	3.3906	1	1359400			18517	7861	13321	13422	18145	18145					-0.08987000176409765
GTFGFNTTC	9	Unmodified	_GTFGFNTTC_					0	0	0		SELP|p.H658Y|1|0.15|ENSG00000174175|chr1:169596054-169596054|G/A|missense_variant;ENSG00000174175|ENST00000263686|SELP	SELP|p.H658Y|1|0.15|ENSG00000174175|chr1:169596054-169596054|G/A|missense_variant	SELP|p.H658Y|1|0.15|ENSG00000174175|chr1:169596054-169596054|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	474.20001	946.385467	-0.36145	-0.0001714	0.2153	0.0001021	-0.14615	-6.9303E-05	474.1997747816519	78.193	0.40594	78.193	77.998	78.403	0	0.0011593	6.4554E-05	NaN	21.537	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	744950			18518	7861	13321	13422							-0.08987000176409765
GTFGKLVLV	9	Unmodified	_GTFGKLVLV_					0	0	0		ENST00000374825.8_1_6:32936454-32936616:+|nuORF	ENST00000374825.8_1_6:32936454-32936616:+|nuORF	ENST00000374825.8_1_6:32936454-32936616:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	466.833740234375	2	467.292028	932.569503	-0.40822	-0.00019076	0.089675	4.1904E-05	-0.31855	-0.00014885	467.29205386285486	80.866	0.40717	80.866	80.642	81.049	0					13	7	2	0	0	0	0.63327	1	29506	29506		13.042	2.9685	1	913840			18519	11261	13322	13423	18146	18146					0.10052136316608085
GTFGKLVLV	9	Unmodified	_GTFGKLVLV_					0	0	0		ENST00000374825.8_1_6:32936454-32936616:+|nuORF	ENST00000374825.8_1_6:32936454-32936616:+|nuORF	ENST00000374825.8_1_6:32936454-32936616:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	467.292028	932.569503	-0.57649	-0.00026939	0.3583	0.00016743	-0.2182	-0.00010196	467.2919008312781	79.787	0.35783	80.531	80.401	80.759	0.74474	-0.16729	0.00017963	NaN	31.268	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1681400			18520	11261	13322	13423							0.10052136316608085
GTFGLLSGAL	10	Unmodified	_GTFGLLSGAL_					0	0	0		ENSG00000224940|ENST00000446477|PRRT4	ENSG00000224940|ENST00000446477|PRRT4	ENSG00000224940|ENST00000446477|PRRT4	MULTI-SECPEP	A375_MHC_IP_R1	1	468.6635437011719	2	468.263468	934.512382	-0.14826	-6.9423E-05	-0.74871	-0.00035059	-0.89697	-0.00042002	468.263265419957	111.37	1.9922	111.37	110.49	112.48	0					70	38	4	0	0	0	0.19481	1	40782	40782		49.933	0	1	10262000			18521	9693	13323	13424	18147	18147					0.04250669040231969
GTFNPVSLW	9	Unmodified	_GTFNPVSLW_					0	0	0		nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;ENST00000544418.1_1_12:24987681-25055019:-|nuORF;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1;BCAT1|p.S195L|1|0.2|ENSG00000060982|chr12:24849876-24849876|G/A|missense_variant	nc|ENSG00000060982|P54687-2|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	MULTI-MSMS	A375_MHC_IP_R1	1	511.16131591796875	2	510.761092	1019.50763	-0.26527	-0.00013549	0.72642	0.00037103	0.46115	0.00023554	510.76130809824724	128.1	0.25354	128.1	127.97	128.23	0					12	4	3	0	0	0	0.0092471	1	49201	49201		103.35	48.58	1	13400000			18522	1317	13324	13425	18148	18148					-0.0013421510253692759
GTFNPVSLW	9	Unmodified	_GTFNPVSLW_					0	0	0		nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;ENST00000544418.1_1_12:24987681-25055019:-|nuORF;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1;BCAT1|p.S195L|1|0.2|ENSG00000060982|chr12:24849876-24849876|G/A|missense_variant	nc|ENSG00000060982|P54687-2|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	MULTI-MSMS	A375_MHC_IP_R2	2	511.1611633300781	2	510.761092	1019.50763	-0.79759	-0.00040738	0.78332	0.00040009	-0.014274	-7.2904E-06	510.7613687688305	127.8	0.40487	128.07	127.92	128.32	0.26592					13	7	3	0	0	0	0.0094639	1	50183	50183		106.94	48.261	1	10626000			18523	1317	13324	13425	18149	18149					-0.0013421510253692759
GTFNQYVCW	9	Unmodified	_GTFNQYVCW_					0	0	0		GLP2R|p.D101N|1|0.54|ENSG00000065325|chr17:9836394-9836394|G/A|missense_variant	GLP2R|p.D101N|1|0.54|ENSG00000065325|chr17:9836394-9836394|G/A|missense_variant	GLP2R|p.D101N|1|0.54|ENSG00000065325|chr17:9836394-9836394|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	559.211181640625	2	559.242209	1116.46987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.489	1	35.489	34.989	35.989	0								0	0	0	0.15486	1	11807	11807		10.074	0.72649	1				18524	14051	13325	13426	18150	18150					-0.08371049359675453
GTFRGTRYF	9	Unmodified	_GTFRGTRYF_					0	0	0		nc|ENSG00000083799|Q9NQC7-2|CYLD;ENSG00000083799|ENST00000427738|CYLD;ENST00000563629.1_1_16:50783909-50820919:+|nuORF;ENST00000569891.5_1_16:50783609-50818363:+|nuORF	nc|ENSG00000083799|Q9NQC7-2|CYLD	nc|ENSG00000083799|Q9NQC7-2|CYLD	MULTI-MSMS	A375_MHC_IP_R1	1	553.1824951171875	2	552.78289	1103.55123	-0.8833	-0.00048828	0.22243	0.00012295	-0.66088	-0.00036532	552.7830979013207	38.304	0.91812	38.304	37.761	38.679	0					37	17	4	0	0	0	0.14858	1	12984	12984		41.956	21.084	1	10619000			18525	1786	13326	13427	18151	18151					0.0035939439460435096
GTFRGTRYF	9	Unmodified	_GTFRGTRYF_					0	0	0		nc|ENSG00000083799|Q9NQC7-2|CYLD;ENSG00000083799|ENST00000427738|CYLD;ENST00000563629.1_1_16:50783909-50820919:+|nuORF;ENST00000569891.5_1_16:50783609-50818363:+|nuORF	nc|ENSG00000083799|Q9NQC7-2|CYLD	nc|ENSG00000083799|Q9NQC7-2|CYLD	MULTI-SECPEP	A375_MHC_IP_R1	1	369.2578430175781	3	368.857686	1103.55123	-0.080187	-2.9578E-05	0.54242	0.00020007	0.46223	0.0001705	368.857844634288	38.293	0.71397	38.293	38.016	38.73	0					36	13	4	0	0	0	0.23894	1	12948	12948		51.488	36.531	1	27133000			18526	1786	13326	13427	18152	18152					0.0035939439460435096
GTFSYKTF	8	Unmodified	_GTFSYKTF_					0	0	0		ENSG00000078098|ENST00000188790|FAP;FAP|p.P59S|1|0.4|ENSG00000078098|chr2:162226538-162226538|G/A|missense_variant	ENSG00000078098|ENST00000188790|FAP	ENSG00000078098|ENST00000188790|FAP	MULTI-SECPEP	A375_MHC_IP_R2	2	476.1336975097656	2	475.734543	949.454533	-0.8122	-0.00038639	0.056124	2.67E-05	-0.75608	-0.00035969	475.73464642862206	52.001	1.673	52.754	51.663	53.336	0.75225					67	32	3	0	0	0	0.84748	1	19548	19548		21.747	21.747	1	8866900			18527	1666	13327	13428	18153	18153					-0.0222159288517787
GTFTNQIHKW	10	Unmodified	_GTFTNQIHKW_					0	0	0		nc|ENSG00000244687|Q13404-1|UBE2V1;ENST00000453505.6_1_20:48741597-48767785:-|nuORF;nc|ENSG00000240849|A5PLL7-2|PEDS1;ENSG00000240849|ENST00000371652|PEDS1	nc|ENSG00000244687|Q13404-1|UBE2V1	nc|ENSG00000244687|Q13404-1|UBE2V1	MULTI-MSMS	A375_MHC_IP_R1	1	411.6122131347656	3	411.212128	1230.61456	0.067093	2.7589E-05	-0.039094	-1.6076E-05	0.027999	1.1513E-05	411.2121233060403	42.057	0.6594	42.057	41.777	42.436	0					37	12	4	0	0	0	0.015903	1	14529	14529		88.364	63.482	1	23966000			18528	14917	13328	13429	18154	18154					0.008473351118254868
GTFTNQIHKW	10	Unmodified	_GTFTNQIHKW_					0	0	0		nc|ENSG00000244687|Q13404-1|UBE2V1;ENST00000453505.6_1_20:48741597-48767785:-|nuORF;nc|ENSG00000240849|A5PLL7-2|PEDS1;ENSG00000240849|ENST00000371652|PEDS1	nc|ENSG00000244687|Q13404-1|UBE2V1	nc|ENSG00000244687|Q13404-1|UBE2V1	MULTI-MSMS	A375_MHC_IP_R1	1	617.2158203125	2	616.314554	1230.61456	-0.36895	-0.00022739	0.4924	0.00030347	0.12345	7.6083E-05	616.3148506838527	42.057	0.50762	42.057	41.828	42.336	0					22	9	3	0	0	0	0.0049421	1	14552	14552		110.55	74.426	1	8984800			18529	14917	13328	13429	18155	18155					0.008473351118254868
GTFTNQIHKW	10	Unmodified	_GTFTNQIHKW_					0	0	0		nc|ENSG00000244687|Q13404-1|UBE2V1;ENST00000453505.6_1_20:48741597-48767785:-|nuORF;nc|ENSG00000240849|A5PLL7-2|PEDS1;ENSG00000240849|ENST00000371652|PEDS1	nc|ENSG00000244687|Q13404-1|UBE2V1	nc|ENSG00000244687|Q13404-1|UBE2V1	MULTI-MSMS	A375_MHC_IP_R2	2	411.6120300292969	3	411.212128	1230.61456	-0.23338	-9.5967E-05	0.015856	6.52E-06	-0.21752	-8.9447E-05	411.21212436261715	41.204	0.55709	41.978	41.743	42.3	0.77451					28	10	4	0	0	0	0.067551	1	15256	15256		70.929	40.225	1	20601000			18530	14917	13328	13429	18156	18156					0.008473351118254868
GTFTNQIHKW	10	Unmodified	_GTFTNQIHKW_					0	0	0		nc|ENSG00000244687|Q13404-1|UBE2V1;ENST00000453505.6_1_20:48741597-48767785:-|nuORF;nc|ENSG00000240849|A5PLL7-2|PEDS1;ENSG00000240849|ENST00000371652|PEDS1	nc|ENSG00000244687|Q13404-1|UBE2V1	nc|ENSG00000244687|Q13404-1|UBE2V1	MULTI-SECPEP	A375_MHC_IP_R2	2	616.7141723632812	2	616.314554	1230.61456	-0.88507	-0.00054548	0.23449	0.00014452	-0.65058	-0.00040096	616.3147947365312	41.197	0.45567	41.972	41.743	42.198	0.77451					18	8	3	0	0	0	0.030251	1	15271	15271		154.75	118.63	1	6170100			18531	14917	13328	13429	18157	18157					0.008473351118254868
GTGCCGAGG	9	Unmodified	_GTGCCGAGG_					0	0	0		nc|ENSG00000100490|Q00532-2|CDKL1	nc|ENSG00000100490|Q00532-2|CDKL1	nc|ENSG00000100490|Q00532-2|CDKL1	MULTI-SECPEP	A375_MHC_IP_R2	2	682.4097900390625	1	682.228321	681.221045	-0.62033	-0.00042321	-2.2989	-0.0015684	-2.9192	-0.0019916	682.2294787558251	102.89	2.388	103.65	102.01	104.4	0.76429					61	46	2	0	0	0	0.8028	1	39222	39222		0	0	1	1548900			18532	14507	13329	13430	18158	18158					-0.13231715867993898
GTGGAIMGLH	10	Unmodified	_GTGGAIMGLH_					0	0	0			REV__ENST00000528585.5_1_11:7686741-7690520:-|nuORF	REV__ENST00000528585.5_1_11:7686741-7690520:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	456.6454772949219	2	457.231645	912.448736	-0.37868	-0.00017315	-0.44532	-0.00020361	-0.824	-0.00037676	457.23147137703376	32.185	0.81458	32.185	31.87	32.684	0					19	15	2	0	0	0	0.91556	1	10286	10286		10.074	5.7447	1	1191700	+		18533	20675	13330	13431	18159	18159					-0.01099014668500331
GTGGAIMGLH	10	Unmodified	_GTGGAIMGLH_					0	0	0			REV__ENST00000528585.5_1_11:7686741-7690520:-|nuORF	REV__ENST00000528585.5_1_11:7686741-7690520:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	457.231645	912.448736	-0.3084	-0.00014101	-0.09028	-4.1279E-05	-0.39868	-0.00018229	457.23155176776487	31.47	0.66163	32.188	31.974	32.636	0.71857	0.0014381	7.2039E-05	NaN	10.074	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1514500	+		18534	20675	13330	13431							-0.01099014668500331
GTGNLIQWLR	10	Unmodified	_GTGNLIQWLR_					0	0	0			REV__ENSG00000187122|ENST00000266058|SLIT1	REV__ENSG00000187122|ENST00000266058|SLIT1	MULTI-MSMS	A375_MHC_IP_R2	2	386.9568176269531	3	386.552374	1156.63529	-0.15171	-5.8645E-05	1.8526	0.00071614	1.7009	0.00065749	386.55245041758855	31.706	0.30453	32.442	32.3	32.605	0.73691					8	5	2	0	0	0	0.70741	1	11175	11175		8.9762	0.82072	1	809200	+		18535	22010	13331	13432	18160	18160					0.06323925491506088
GTGPPRALW	9	Unmodified	_GTGPPRALW_					0	0	0		nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B;ENST00000551111.1_1_12:50024390-50026982:+|nuORF	nc|ENSG00000110844|Q6NWY9-2|PRPF40B	nc|ENSG00000110844|Q6NWY9-2|PRPF40B	MULTI-SECPEP	A375_MHC_IP_R1	1	478.16131591796875	2	477.761426	953.5083	-0.49348	-0.00023577	0.26838	0.00012822	-0.2251	-0.00010754	477.7614252736279	57.75	0.86343	57.75	57.364	58.228	0					35	16	3	0	0	0	0.04038	1	20702	20702		75.761	45.536	1	6979900			18536	2951	13332	13433	18161	18161					0.029686243371770615
GTGPPRALW	9	Unmodified	_GTGPPRALW_					0	0	0		nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B;ENST00000551111.1_1_12:50024390-50026982:+|nuORF	nc|ENSG00000110844|Q6NWY9-2|PRPF40B	nc|ENSG00000110844|Q6NWY9-2|PRPF40B	MULTI-SECPEP	A375_MHC_IP_R2	2	478.1605529785156	2	477.761426	953.5083	-0.97081	-0.00046382	0.10233	4.8887E-05	-0.86849	-0.00041493	477.76133405448155	56.939	0.81513	57.689	57.306	58.121	0.75015					36	15	3	0	0	0	0.16764	1	21477	21477		51.63	20.993	1	6182200			18537	2951	13332	13433	18162	18162					0.029686243371770615
GTGSGAADAP	10	Unmodified	_GTGSGAADAP_					0	0	0			REV__MAP3K1|p.T946Nfs*57|1|0.23|ENSG00000095015|chr5:56882036-56882037|AC/-|frameshift_variant	REV__MAP3K1|p.T946Nfs*57|1|0.23|ENSG00000095015|chr5:56882036-56882037|AC/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	402.136962890625	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.133	1	47.133	46.633	47.633	0								0	0	0	0.15332	1	16569	16569		10.074	1.4806	1		+		18538	16987	13333	13434	18163	18163					-0.06336803855481321
GTGSGAADAP	10	Unmodified	_GTGSGAADAP_					0	0	0			REV__MAP3K1|p.T946Nfs*57|1|0.23|ENSG00000095015|chr5:56882036-56882037|AC/-|frameshift_variant	REV__MAP3K1|p.T946Nfs*57|1|0.23|ENSG00000095015|chr5:56882036-56882037|AC/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	402.13714599609375	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.246	1	47.012	46.512	47.512	0.76519								0	0	0	0.15353	1	17315	17315		9.3831	0.78985	1		+		18539	16987	13333	13434	18164	18164					-0.06336803855481321
GTGSHHPGLT	10	Unmodified	_GTGSHHPGLT_					0	0	0		ENST00000369888.5_1_20:62590717-62591047:-|nuORF	ENST00000369888.5_1_20:62590717-62591047:-|nuORF	ENST00000369888.5_1_20:62590717-62591047:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	482.1799621582031	2	482.235773	962.456993	-0.47183	-0.00022753	-0.30246	-0.00014586	-0.77429	-0.00037339	482.23556113199515	27.204	0.55623	27.204	27.027	27.584	0					19	10	2	0	0	0	0.48529	1	8352	8352		29.082	0	1	21484000			18540	11144	13334	13435	18165	18165					-0.025737444275364396
GTHDGSVYFW	10	Unmodified	_GTHDGSVYFW_					0	0	0		nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1;nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF	nc|ENSG00000109046|Q9Y6I7-2|WSB1	nc|ENSG00000109046|Q9Y6I7-2|WSB1	MULTI-SECPEP	A375_MHC_IP_R1	1	585.1566772460938	2	584.756538	1167.49852	-0.29032	-0.00016977	0.43925	0.00025685	0.14892	8.7085E-05	584.7568499801561	83.549	0.61118	83.549	83.175	83.786	0					23	11	3	0	0	0	0.22217	1	30552	30552		56.177	29.293	1	3878000			18541	2849	13335	13436	18166	18166					-0.07852608458847499
GTHDGSVYFW	10	Unmodified	_GTHDGSVYFW_					0	0	0		nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1;nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF	nc|ENSG00000109046|Q9Y6I7-2|WSB1	nc|ENSG00000109046|Q9Y6I7-2|WSB1	MULTI-SECPEP	A375_MHC_IP_R2	2	585.1564331054688	2	584.756538	1167.49852	-0.48387	-0.00028295	-0.38533	-0.00022533	-0.86921	-0.00050827	584.7563388403128	82.718	0.50313	83.461	83.195	83.698	0.74293					19	9	3	0	0	0	0.27864	1	31415	31415		49.933	24.534	1	2338300			18542	2849	13335	13436	18167	18167					-0.07852608458847499
GTHIKQHQF	9	Unmodified	_GTHIKQHQF_					0	0	0			REV__ENSG00000165512|ENST00000298299|ZNF22	REV__ENSG00000165512|ENST00000298299|ZNF22	MULTI-SECPEP	A375_MHC_IP_R1	1	365.9328918457031	3	365.861319	1094.56213	0.11516	4.2133E-05	-1.2596	-0.00046085	-1.1445	-0.00041871	365.86076623039764	27.181	0.40408	27.181	27.027	27.432	0					9	7	2	0	0	0	0.76187	1	8236	8236		2.2828	0	1	1374900	+		18543	20591	13336	13437	18168	18168					0.01862796768887165
GTHIKQHQSL	10	Unmodified	_GTHIKQHQSL_					0	0	0			REV__ENSG00000167637|ENST00000618787|ZNF283	REV__ENSG00000167637|ENST00000618787|ZNF283	MULTI-MSMS	A375_MHC_IP_R2	2	383.6046447753906	3	383.543878	1147.60981	-0.54485	-0.00020897	0.61492	0.00023585	0.070071	2.6875E-05	383.5441399246559	25.307	0.50958	25.95	25.719	26.229	0.64368					17	9	2	0	0	0	0.53116	1	8337	8337		18.34	0	1	8599200	+		18544	20780	13337	13438	18169	18169					0.04190450969099402
GTHIRRHVILY	11	Unmodified	_GTHIRRHVILY_					0	0	0			REV__nc|ENSG00000185252|Q16587-4|ZNF74	REV__nc|ENSG00000185252|Q16587-4|ZNF74	MULTI-SECPEP	A375_MHC_IP_R1	1	683.2975463867188	2	682.89912	1363.78369	-0.76262	-0.00052079	-0.96911	-0.00066181	-1.7317	-0.0011826	682.8984501625798	53.16	0.30391	53.16	52.997	53.301	0					10	5	3	0	0	0	0.99921	1	18957	18957		1.3295	0	1	2809600	+		18545	21881	13338	13439	18170	18170					0.11634656465230364
GTHNSSDLW	9	Unmodified	_GTHNSSDLW_					0	0	0		ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;nc|ENSG00000140262|Q99081-2|TCF12	ENSG00000140262|ENST00000333725|TCF12	ENSG00000140262|ENST00000333725|TCF12	MULTI-MSMS	A375_MHC_IP_R1	1	509.12530517578125	2	508.725238	1015.43592	-0.66809	-0.00033987	0.35032	0.00017822	-0.31777	-0.00016166	508.7254742174577	39.721	0.50797	39.721	39.491	39.999	0					20	9	3	0	0	0	0.13845	1	13615	13615		43.772	22.026	1	4183000			18546	5131	13339	13440	18171	18171					-0.07117754527052966
GTHNSSDLW	9	Unmodified	_GTHNSSDLW_					0	0	0		ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;nc|ENSG00000140262|Q99081-2|TCF12	ENSG00000140262|ENST00000333725|TCF12	ENSG00000140262|ENST00000333725|TCF12	MULTI-MSMS	A375_MHC_IP_R2	2	509.124755859375	2	508.725238	1015.43592	-1.0098	-0.0005137	0.44522	0.0002265	-0.56457	-0.00028721	508.72554173925505	38.855	0.56332	39.629	39.351	39.914	0.77451					18	10	3	0	0	0	0.13845	1	14342	14342		43.772	24.515	1	4239700			18547	5131	13339	13440	18172	18172					-0.07117754527052966
GTHPPFLTF	9	Unmodified	_GTHPPFLTF_					0	0	0		nc|ENSG00000112782|Q9NZA1|CLIC5;nc|ENSG00000112782|Q9NZA1-3|CLIC5;ENSG00000112782|ENST00000339561|CLIC5	nc|ENSG00000112782|Q9NZA1|CLIC5	nc|ENSG00000112782|Q9NZA1|CLIC5	MULTI-MSMS	A375_MHC_IP_R1	1	509.1629333496094	2	508.763635	1015.51272	-0.374	-0.00019028	-0.30838	-0.00015689	-0.68238	-0.00034717	508.76354385793917	89.323	0.81223	89.323	88.867	89.679	0					32	14	3	0	0	0	0.17328	1	32755	32755		39.957	0	1	2883100			18548	14552	13340	13441	18173	18173					0.0055808876007859
GTHSLDIKW	9	Unmodified	_GTHSLDIKW_					0	0	0		ENSG00000141562|ENST00000309794|NARF;nc|ENSG00000141562|Q9UHQ1-2|NARF;nc|ENSG00000141562|Q9UHQ1-4|NARF;ENST00000577812.5_1_17:80442656-80446030:+|nuORF;nc|ENSG00000141562|Q9UHQ1-3|NARF	ENSG00000141562|ENST00000309794|NARF	ENSG00000141562|ENST00000309794|NARF	MULTI-MSMS	A375_MHC_IP_R1	1	353.25372314453125	3	352.853941	1055.53999	-0.19988	-7.0527E-05	0.21661	7.6431E-05	0.016731	5.9035E-06	352.8539809230149	52.622	0.71177	52.622	52.387	53.099	0					40	13	4	0	0	0	0.010171	1	18702	18702		78.06	50.837	1	23195000			18549	5256	13341	13442	18174	18174					0.01444572300465552
GTHSLDIKW	9	Unmodified	_GTHSLDIKW_					0	0	0		ENSG00000141562|ENST00000309794|NARF;nc|ENSG00000141562|Q9UHQ1-2|NARF;nc|ENSG00000141562|Q9UHQ1-4|NARF;ENST00000577812.5_1_17:80442656-80446030:+|nuORF;nc|ENSG00000141562|Q9UHQ1-3|NARF	ENSG00000141562|ENST00000309794|NARF	ENSG00000141562|ENST00000309794|NARF	MULTI-MSMS	A375_MHC_IP_R2	2	354.27783203125	3	352.853941	1055.53999	-0.52089	-0.0001838	0.12161	4.291E-05	-0.39929	-0.00014089	352.8539384504964	51.861	0.6117	52.614	52.321	52.932	0.75225					39	11	5	0	0	0	0.64136	1	19499	19499		8.4443	1.3426	1	23092000			18550	5256	13341	13442	18175	18175					0.01444572300465552
GTHSLDIKW	9	Unmodified	_GTHSLDIKW_					0	0	0		ENSG00000141562|ENST00000309794|NARF;nc|ENSG00000141562|Q9UHQ1-2|NARF;nc|ENSG00000141562|Q9UHQ1-4|NARF;ENST00000577812.5_1_17:80442656-80446030:+|nuORF;nc|ENSG00000141562|Q9UHQ1-3|NARF	ENSG00000141562|ENST00000309794|NARF	ENSG00000141562|ENST00000309794|NARF	MULTI-MSMS	A375_MHC_IP_R2	2	529.1767578125	2	528.777274	1055.53999	-0.83169	-0.00043978	-0.27006	-0.0001428	-1.1018	-0.00058258	528.7771410531036	51.899	0.51074	52.651	52.321	52.831	0.75225					15	9	2	0	0	0	0.0096822	1	19517	19517		110.55	64.813	1	5957400			18551	5256	13341	13442	18176	18176					0.01444572300465552
GTIAIKHYF	9	Unmodified	_GTIAIKHYF_					0	0	0		nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;ENSG00000143493|ENST00000366994|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	MULTI-SECPEP	A375_MHC_IP_R1	1	525.6920166015625	2	525.292559	1048.57057	-0.006643	-3.4895E-06	-3.4428	-0.0018085	-3.4494	-0.001812	525.2921520407933	49.323	0.557	49.323	48.933	49.49	0					21	10	3	0	0	0	0.056023	1	17406	17406		75.761	50.362	1	3432000			18552	5400	13342	13443	18177	18177					0.04822350685503807
GTIAIKHYF	9	Unmodified	_GTIAIKHYF_					0	0	0		nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;ENSG00000143493|ENST00000366994|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	MULTI-SECPEP	A375_MHC_IP_R2	2	525.0226440429688	2	525.292559	1048.57057	-0.44844	-0.00023556	-3.2679	-0.0017166	-3.7163	-0.0019522	525.7921922245781	48.329	0.90982	49.086	48.678	49.588	0.75737					29	17	3	0	0	0	0.56537	1	18092	18092		22.736	2.2827	1	3329300			18553	5400	13342	13443	18178	18178					0.04822350685503807
GTIDWRDASR	10	Unmodified	_GTIDWRDASR_					0	0	0		ENST00000413816.6_3_12:129383828-129431963:+|nuORF	ENST00000413816.6_3_12:129383828-129431963:+|nuORF	ENST00000413816.6_3_12:129383828-129431963:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	393.26104736328125	3	392.863388	1175.56833	-0.27791	-0.00010918	-2.5171	-0.00098886	-2.795	-0.001098	392.86109325256126	65.27	0.60918	66.008	65.664	66.273	0.73811					29	11	4	0	0	0	0.91442	1	24795	24795		4.4062	2.951	1	2079000			18554	11661	13343	13444	18179	18179					-0.01242729790260455
GTIDWRDASR	10	Unmodified	_GTIDWRDASR_					0	0	0		ENST00000413816.6_3_12:129383828-129431963:+|nuORF	ENST00000413816.6_3_12:129383828-129431963:+|nuORF	ENST00000413816.6_3_12:129383828-129431963:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	392.863388	1175.56833	-0.079942	-3.1406E-05	-2.7688	-0.0010878	-2.8488	-0.0011192	393.5325813445913	66.047	0.558	66.047	65.768	66.326	0	0.019573	-0.00016104	NaN	4.4062	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2166500			18555	11661	13343	13444							-0.01242729790260455
GTIIKVAEV	9	Unmodified	_GTIIKVAEV_					0	0	0			REV__ENSG00000115998|ENST00000264434|C2orf42	REV__ENSG00000115998|ENST00000264434|C2orf42	MULTI-MSMS	A375_MHC_IP_R1	1	465.68682861328125	2	465.286943	928.559333	-0.22999	-0.00010701	-0.03073	-1.4298E-05	-0.26072	-0.00012131	465.28687915244745	60.352	0.45712	60.352	60.109	60.566	0					14	8	2	0	0	0	0.082375	1	21735	21735		53.833	1.5644	1	2093800	+		18556	17929	13344	13445	18180	18180					0.09219528591370363
GTIIKVAEV	9	Unmodified	_GTIIKVAEV_					0	0	0			REV__ENSG00000115998|ENST00000264434|C2orf42	REV__ENSG00000115998|ENST00000264434|C2orf42	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	465.286943	928.559333	-0.22999	-0.00010701	-0.03073	-1.4298E-05	-0.26072	-0.00012131	465.28687915244745	60.352	0.45712	60.352	60.109	60.566	0	0.11476	-1.6849E-06	NaN	53.833	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2093800	+		18557	17929	13344	13445							0.09219528591370363
GTIKDIVTRY	10	Unmodified	_GTIKDIVTRY_					0	0	0		ENSG00000196305|ENST00000443024|IARS1;ENST00000490438.1_1_9:95050027-95055918:-|nuORF	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	A375_MHC_IP_R2	2	389.6239013671875	3	389.224034	1164.65027	-0.25153	-9.7902E-05	0.40385	0.00015719	0.15232	5.9286E-05	389.2241717579899	50.89	0.50402	51.644	51.311	51.815	0.75406					19	9	3	0	0	0	0.65387	1	19169	19169		16.838	5.7731	1	1874500			18558	9025	13345	13446	18181	18181					0.07453372568852501
GTIKGQFNF	9	Unmodified	_GTIKGQFNF_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;ENST00000569930.1_1_16:2133412-2138608:+|nuORF	nc|ENSG00000103197|P49815-7|TSC2;ENST00000569930.1_1_16:2133412-2138608:+|nuORF	nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	A375_MHC_IP_R1	1	506.6661071777344	2	506.266542	1010.51853	-0.36489	-0.00018473	-0.080384	-4.0696E-05	-0.44527	-0.00022543	506.2664741941383	57.593	1.4742	57.593	57.159	58.633	0					47	28	2	0	0	0	0.0099819	1	20606	20606		122.18	44.03	1	60979000			18559	2430;13597	13346	13447	18182	18182					0.01369187271757255
GTIKGQFNF	9	Unmodified	_GTIKGQFNF_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;ENST00000569930.1_1_16:2133412-2138608:+|nuORF	nc|ENSG00000103197|P49815-7|TSC2;ENST00000569930.1_1_16:2133412-2138608:+|nuORF	nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	A375_MHC_IP_R2	2	506.6658020019531	2	506.266542	1010.51853	-1.1518	-0.0005831	0.16052	8.1265E-05	-0.99125	-0.00050184	506.2665672186969	56.683	1.3754	57.434	56.898	58.273	0.75015					46	26	2	0	0	0	0.0099819	1	21390	21390		122.18	44.03	1	60941000			18560	2430;13597	13346	13447	18183	18183					0.01369187271757255
GTIPKRPWL	9	Unmodified	_GTIPKRPWL_					0	0	0		nc|ENSG00000101191|Q9BTC0-1|DIDO1;ENSG00000101191|ENST00000395343|DIDO1	nc|ENSG00000101191|Q9BTC0-1|DIDO1	nc|ENSG00000101191|Q9BTC0-1|DIDO1	MULTI-MSMS	A375_MHC_IP_R1	1	356.9501953125	3	356.550193	1066.62875	0.36826	0.0001313	-0.4952	-0.00017656	-0.12695	-4.5263E-05	356.54999138655785	48.322	0.55696	48.322	48.02	48.577	0					22	10	3	0	0	0	0.2415	1	17018	17018		34.932	23.437	1	4788100			18561	2268	13347	13448	18184	18184					0.09810032330801732
GTIPKRPWL	9	Unmodified	_GTIPKRPWL_					0	0	0		nc|ENSG00000101191|Q9BTC0-1|DIDO1;ENSG00000101191|ENST00000395343|DIDO1	nc|ENSG00000101191|Q9BTC0-1|DIDO1	nc|ENSG00000101191|Q9BTC0-1|DIDO1	MULTI-MSMS	A375_MHC_IP_R2	2	356.9501647949219	3	356.550193	1066.62875	-0.040796	-1.4546E-05	0.049366	1.7601E-05	0.0085698	3.0556E-06	356.5501485350116	47.346	0.56093	48.107	47.817	48.378	0.76127					22	10	3	0	0	0	0.50892	1	17731	17731		19.362	11.206	1	6109500			18562	2268	13347	13448	18185	18185					0.09810032330801732
GTKAYYKRD	9	Unmodified	_GTKAYYKRD_					0	0	0			REV__CFHR3|p.R285K|1|0.21|ENSG00000116785|chr1:196793374-196793374|G/A|missense_variant	REV__CFHR3|p.R285K|1|0.21|ENSG00000116785|chr1:196793374-196793374|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	368.2855224609375	3	367.861096	1100.56146	0.15036	5.5311E-05	1.7698	0.00065105	1.9202	0.00070636	368.19684998882116	28.212	0.50337	28.212	27.937	28.44	0					19	9	3	0	0	0	0.74412	1	8722	8722		6.6304	1.2277	1	3586600	+		18563	15653	13348	13449	18186	18186					0.015199573291738488
GTKFALKLW	9	Unmodified	_GTKFALKLW_					0	0	0		ENSG00000186364|ENST00000334513|NUDT17	ENSG00000186364|ENST00000334513|NUDT17	ENSG00000186364|ENST00000334513|NUDT17	MULTI-SECPEP	A375_MHC_IP_R2	2	531.6936645507812	2	532.318577	1062.6226	-0.69148	-0.00036809	2.4107	0.0012833	1.7192	0.00091518	532.3201567019904	76.786	0.55495	77.527	77.25	77.805	0.74052					12	10	2	0	0	0	0.55359	1	29260	29260		28.487	17.663	1	1505100			18564	8743	13349	13450	18187	18187					0.09379514099259723
GTKGPSNVF	9	Unmodified	_GTKGPSNVF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	A375_MHC_IP_R1	1	454.1376647949219	2	453.737617	905.460681	-0.20279	-9.2014E-05	0.37217	0.00016887	0.16938	7.6855E-05	453.7377383098407	31.836	0.56108	31.836	31.514	32.075	0					19	10	2	0	0	0	0.054426	1	10232	10232		62.573	5.1013	1	2211500			18565	1156	13350	13451	18188	18188					0.004169253463260247
GTKKKVVRAI	10	Unmodified	_GTKKKVVRAI_					0	0	0			REV__ENSG00000234127|ENST00000454678|TRIM26	REV__ENSG00000234127|ENST00000454678|TRIM26	MSMS	A375_MHC_IP_R2	2	367.2678527832031	3	367.248514	1098.72371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.632	1	20.242	19.742	20.742	0.61029								0	0	0	0.15593	1	6047	6047		1.5923	0.52082	1		+		18566	22749	13351	13452	18189	18189					0.17829965801979597
GTKTKSRSFS	10	Unmodified	_GTKTKSRSFS_					0	0	0			REV__nc|ENSG00000121741|Q9UBW7-2|ZMYM2	REV__nc|ENSG00000121741|Q9UBW7-2|ZMYM2	MULTI-SECPEP	A375_MHC_IP_R2	2	550.1986083984375	2	549.798737	1097.58292	-1.0788	-0.0005931	0.30683	0.0001687	-0.77193	-0.0004244	549.7988993261911	19.615	0.86077	20.226	19.79	20.651	0.61029					26	16	2	0	0	0	0.77698	1	6018	6018		28.495	1.2713	1	1495200	+		18567	24247	13352	13453	18190	18190					0.03803342357900874
GTKYPVEW	8	Unmodified	_GTKYPVEW_					0	0	0		ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	MULTI-MSMS	A375_MHC_IP_R1	1	490.70068359375	2	490.247818	978.481082	-0.31378	-0.00015383	-0.14942	-7.3252E-05	-0.4632	-0.00022708	490.2477222320538	57.778	0.71096	57.778	57.415	58.126	0					38	13	4	0	0	0	0.74543	1	20853	20853		21.537	2.098	1	9620400			18568	2512	13353	13454	18191	18191					-0.00901903993860742
GTKYPVEW	8	Unmodified	_GTKYPVEW_					0	0	0		ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	MULTI-MSMS	A375_MHC_IP_R2	2	490.6470031738281	2	490.247818	978.481082	-0.96561	-0.00047339	-0.22425	-0.00010994	-1.1899	-0.00058333	490.2477430079792	56.988	0.61185	57.738	57.459	58.071	0.75015					32	11	4	0	0	0	0.16328	1	21527	21527		82.529	42.572	1	11305000			18569	2512	13353	13454	18192	18192					-0.00901903993860742
GTLDGGFRF	9	Unmodified	_GTLDGGFRF_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R1	1	485.6425476074219	2	485.243067	968.47158	-0.10563	-5.1256E-05	-0.36919	-0.00017915	-0.47482	-0.0002304	485.2429381209863	78.53	0.45533	78.53	78.201	78.657	0					17	8	3	0	0	0	0.12771	1	28633	28633		45.7	5.7499	1	4477300			18570	7807	13354	13455	18193	18193					-0.013916722793851477
GTLDGGFRF	9	Unmodified	_GTLDGGFRF_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	A375_MHC_IP_R2	2	485.6432189941406	2	485.243067	968.47158	-0.60959	-0.0002958	0.19096	9.2663E-05	-0.41863	-0.00020314	485.243134390344	77.679	0.76789	78.422	77.908	78.676	0.74294					22	14	2	0	0	0	0.34746	1	29469	29469		38.176	5.3899	1	3434300			18571	7807	13354	13455	18194	18194					-0.013916722793851477
GTLGGYWGR	9	Unmodified	_GTLGGYWGR_					0	0	0		nc|ENSG00000015532|Q9H1B5-2|XYLT2	nc|ENSG00000015532|Q9H1B5-2|XYLT2	nc|ENSG00000015532|Q9H1B5-2|XYLT2	MSMS	A375_MHC_IP_R1	1	483.6741638183594	2	483.743234	965.471915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.54	1	62.54	62.04	63.04	0								0	0	0	0.14905	1	22589	22589		23.148	1.4018	1				18572	14456	13355	13456	18195	18195					-0.012202525595284897
GTLGTLRTF	9	Unmodified	_GTLGTLRTF_					0	0	0		ENSG00000143412|ENST00000368947|ANXA9	ENSG00000143412|ENST00000368947|ANXA9	ENSG00000143412|ENST00000368947|ANXA9	MULTI-SECPEP	A375_MHC_IP_R1	1	483.6741638183594	2	483.274367	964.53418	-0.20155	-9.7403E-05	0.0080471	3.8889E-06	-0.1935	-9.3514E-05	483.2742481227444	62.581	0.66625	62.581	62.3	62.966	0					35	12	4	0	0	0	0.27114	1	22589	22589		53.404	1.7742	1	10625000			18573	5386	13356	13457	18196	18196					0.05049473788812975
GTLGTLRTF	9	Unmodified	_GTLGTLRTF_					0	0	0		ENSG00000143412|ENST00000368947|ANXA9	ENSG00000143412|ENST00000368947|ANXA9	ENSG00000143412|ENST00000368947|ANXA9	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6737976074219	2	483.274367	964.53418	-0.90331	-0.00043654	0.22031	0.00010647	-0.68299	-0.00033007	483.27428844575405	61.712	0.65525	62.456	62.12	62.776	0.74464					38	12	5	0	0	0	0.20059	1	23348	23348		51.415	7.6428	1	10395000			18574	5386	13356	13457	18197	18197					0.05049473788812975
GTLKERVQW	9	Unmodified	_GTLKERVQW_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-MSMS	A375_MHC_IP_R1	1	372.6101379394531	3	372.876857	1115.60874	0.50854	0.00018962	-0.83918	-0.00031291	-0.33064	-0.00012329	372.8770035934511	35.496	1.2215	35.496	34.963	36.184	0					50	23	4	0	0	0	0.41879	1	11823	11823		23.79	2.1996	1	8392000			18575	3732	13357	13458	18198	18198					0.05556236600182274
GTLKERVQW	9	Unmodified	_GTLKERVQW_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-SECPEP	A375_MHC_IP_R2	2	559.2108154296875	2	558.811648	1115.60874	-0.89093	-0.00049786	-1.4917	-0.00083355	-2.3826	-0.0013314	558.8114763889341	34.586	0.50792	35.349	35.068	35.576	0.76336					27	9	4	0	0	0	0.14554	1	12508	12508		57.249	19.074	1	6615000			18576	3732	13357	13458	18199	18199					0.05556236600182274
GTLKIANKQF	10	Unmodified	_GTLKIANKQF_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	A375_MHC_IP_R2	2	374.2887268066406	3	373.888874	1118.64479	0.02797	1.0458E-05	-0.28774	-0.00010758	-0.25977	-9.7126E-05	373.88870163898645	34.188	0.4585	34.941	34.753	35.211	0.75225					13	8	2	0	0	0	0.52785	1	12361	12361		28.234	15.378	1	9308500			18577	4401	13358	13459	18200	18200					0.09021693777026485
GTLKLCQLL	9	Unmodified	_GTLKLCQLL_					0	0	0		ENST00000448223.6_1_2:17846183-17846285:-|nuORF	ENST00000448223.6_1_2:17846183-17846285:-|nuORF	ENST00000448223.6_1_2:17846183-17846285:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	495.1960754394531	2	494.79662	987.578688	-0.38066	-0.00018835	0.11931	5.9036E-05	-0.26135	-0.00012931	494.79657698412746	77.411	0.50555	77.411	77.133	77.639	0					14	9	3	0	0	0	0.60917	1	28252	28252		19.257	9.1831	1	2363600			18578	12049	13359	13460	18201	18201					0.08440161610621999
GTLLEWDTGW	10	Unmodified	_GTLLEWDTGW_					0	0	0		ENST00000495285.1_1_3:197257612-197260782:-|nuORF	ENST00000495285.1_1_3:197257612-197260782:-|nuORF	ENST00000495285.1_1_3:197257612-197260782:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	589.2590942382812	2	589.279846	1176.54514	-0.21574	-0.00012713	-0.4682	-0.0002759	-0.68394	-0.00040303	589.7808593579864	72.775	0.76031	72.775	72.271	73.031	0					26	14	3	0	0	0	0.6806	1	26350	26350		14.838	6.0929	1	2465700			18579	12704	13360	13461	18202	18202					-0.03607168627604551
GTLLTVNPNI	10	Unmodified	_GTLLTVNPNI_					0	0	0		chr14:22483069-22547506|157|19.17|0.0|20.87|+|2|TRAJ53,TRAC|1	chr14:22483069-22547506|157|19.17|0.0|20.87|+|2|TRAJ53,TRAC|1	chr14:22483069-22547506|157|19.17|0.0|20.87|+|2|TRAJ53,TRAC|1	MULTI-SECPEP	A375_MHC_IP_R1	1	521.6893920898438	2	521.300581	1040.58661	-0.69464	-0.00036212	-0.26251	-0.00013685	-0.95715	-0.00049896	521.3004090503965	86.562	1.3165	86.562	85.616	86.933	0					41	25	3	0	0	0	0.87043	1	31588	31588		20.415	1.1575	1	6899900			18580	432	13361	13462	18203	18203					0.06794012131740601
GTLPFTYMLE	10	Unmodified	_GTLPFTYMLE_					0	0	0		ENSG00000130234|ENST00000252519|ACE2;nc|ENSG00000130234|Q9BYF1-3|ACE2	ENSG00000130234|ENST00000252519|ACE2	ENSG00000130234|ENST00000252519|ACE2	MSMS	A375_MHC_IP_R1	1	586.1981201171875	2	586.288825	1170.5631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.869	1	68.869	68.369	69.369	0								0	0	0	0.15158	1	24982	24982		14.838	0.93222	1				18581	4231	13362	13463	18204	18204					-0.015361696970558114
GTLPGKGAGTW	11	Unmodified	_GTLPGKGAGTW_					0	0	0		ENST00000006053.6_2_16:57418248-57418452:+|nuORF	ENST00000006053.6_2_16:57418248-57418452:+|nuORF	ENST00000006053.6_2_16:57418248-57418452:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	522.664794921875	2	522.777274	1043.53999	-0.67879	-0.00035486	0.25818	0.00013497	-0.42062	-0.00021989	522.7773780027987	27.805	0.35303	27.805	27.634	27.987	0					17	6	3	0	0	0	0.79027	1	8514	8514		21.59	4.4773	1	3168000			18582	10058	13363	13464	18205	18205					0.019965723004588654
GTLPPEIQAW	10	Unmodified	_GTLPPEIQAW_					0	0	0		ENST00000594468.1_1_19:58988585-58988960:+|nuORF;ENST00000391694.4_1_19:58988585-58991546:+|nuORF;nc|ENSG00000083838|Q9NWS9-2|ZNF446;ENSG00000083838|ENST00000594369|ZNF446	ENST00000594468.1_1_19:58988585-58988960:+|nuORF	ENST00000594468.1_1_19:58988585-58988960:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	556.6954345703125	2	556.292756	1110.57096	-0.37576	-0.00020903	2.8851	0.001605	2.5093	0.0013959	556.2939234108431	110.06	1.3235	110.06	109.32	110.65	0					31	25	2	0	0	0	0.49514	1	40377	40377		28.495	5.7582	1	2389900			18583	1789	13364	13465	18206	18206					0.02009725614720992
GTLQKVYFK	9	Unmodified	_GTLQKVYFK_					0	0	0		ENST00000502726.5_1_4:47685742-47840047:-|nuORF;ENST00000503821.5_1_4:47663725-47840047:-|nuORF;ENSG00000145244|ENST00000273857|CORIN;nc|ENSG00000145244|Q9Y5Q5-2|CORIN	ENST00000502726.5_1_4:47685742-47840047:-|nuORF	ENST00000502726.5_1_4:47685742-47840047:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	361.601318359375	3	361.878087	1082.61243	-0.25951	-9.391E-05	-0.83425	-0.0003019	-1.0938	-0.00039581	361.87791040862123	51.008	0.35297	51.762	51.513	51.866	0.75406					9	6	2	0	0	0	0.76827	1	19110	19110		4.1895	0	1	872360			18584	5546	13365	13466	18207	18207					0.07442906374035374
GTLRPFLNW	9	Unmodified	_GTLRPFLNW_					0	0	0		LTF|p.G159S|1|0.3|ENSG00000012223|chr3:46455820-46455820|C/T|missense_variant;nc|ENSG00000012223|P02788-2|LTF;ENSG00000012223|ENST00000231751|LTF	LTF|p.G159S|1|0.3|ENSG00000012223|chr3:46455820-46455820|C/T|missense_variant	LTF|p.G159S|1|0.3|ENSG00000012223|chr3:46455820-46455820|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	552.112060546875	2	552.303458	1102.59236	-0.75267	-0.0004157	-2.8918	-0.0015972	-3.6445	-0.0020129	552.3013965258253	32.859	0.25367	32.859	32.684	32.938	0					8	4	3	0	0	0	0.76187	1	10646	10646		3.9444	0	1	1277900			18585	1009	13366	13467	18208	18208					0.04517155434086817
GTLRVKLRY	9	Unmodified	_GTLRVKLRY_					0	0	0		ENSG00000099250|ENST00000374867|NRP1	ENSG00000099250|ENST00000374867|NRP1	ENSG00000099250|ENST00000374867|NRP1	MULTI-SECPEP	A375_MHC_IP_R2	2	368.5684509277344	3	369.232864	1104.67676	-0.091949	-3.3951E-05	-0.55471	-0.00020482	-0.64666	-0.00023877	369.2328905772752	37.448	0.45915	38.219	38.02	38.479	0.7709					10	8	2	0	0	0	0.80332	1	13812	13812		0.20686	0	1	1107000			18586	2070	13367	13468	18209	18209					0.12861106250829835
GTMDIRHFF	9	Unmodified	_GTMDIRHFF_					0	0	0		RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant;ENSG00000244462|ENST00000374114|RBM12;ENST00000454607.5_1_20:34220607-34246883:-|nuORF;ENST00000352393.8_2_20:34220804-34246883:-|nuORF;ENST00000440240.5_1_20:34220804-34252800:-|nuORF	RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant	RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	375.5831298828125	3	375.183293	1122.52805	0.18575	6.9688E-05	0.25105	9.419E-05	0.4368	0.00016388	375.1833275535533	80.745	0.60867	80.745	80.492	81.1	0					33	11	4	0	0	0	0.04447	1	29476	29476		53.317	33.691	1	5980100			18587	9821	13368	13469	18210	18210					-0.028313677143842142
GTMDIRHFF	9	Unmodified	_GTMDIRHFF_					0	0	0		RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant;ENSG00000244462|ENST00000374114|RBM12;ENST00000454607.5_1_20:34220607-34246883:-|nuORF;ENST00000352393.8_2_20:34220804-34246883:-|nuORF;ENST00000440240.5_1_20:34220804-34252800:-|nuORF	RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant	RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	562.6713256835938	2	562.271301	1122.52805	-0.60102	-0.00033794	0.50587	0.00028443	-0.095157	-5.3504E-05	562.2714248445619	80.77	0.45728	80.77	80.541	80.999	0					15	8	2	0	0	0	0.062639	1	29512	29512		59.368	37.622	1	4048500			18588	9821	13368	13469	18211	18211					-0.028313677143842142
GTMDIRHFF	9	Unmodified	_GTMDIRHFF_					0	0	0		RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant;ENSG00000244462|ENST00000374114|RBM12;ENST00000454607.5_1_20:34220607-34246883:-|nuORF;ENST00000352393.8_2_20:34220804-34246883:-|nuORF;ENST00000440240.5_1_20:34220804-34252800:-|nuORF	RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant	RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	375.5832214355469	3	375.183293	1122.52805	0.34512	0.00012948	-0.62215	-0.00023342	-0.27703	-0.00010394	375.18300773757187	79.892	0.71186	80.637	80.299	81.011	0.74474					29	13	3	0	0	0	0.0090297	1	30309	30309		81.915	57.034	1	8482600			18589	9821	13368	13469	18212	18212					-0.028313677143842142
GTMDIRHFF	9	Unmodified	_GTMDIRHFF_					0	0	0		RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant;ENSG00000244462|ENST00000374114|RBM12;ENST00000454607.5_1_20:34220607-34246883:-|nuORF;ENST00000352393.8_2_20:34220804-34246883:-|nuORF;ENST00000440240.5_1_20:34220804-34252800:-|nuORF	RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant	RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	562.6708374023438	2	562.271301	1122.52805	-0.52287	-0.00029399	-0.3977	-0.00022362	-0.92057	-0.00051761	562.2708944243363	79.939	0.51015	80.684	80.35	80.86	0.74474					18	9	2	0	0	0	0.20059	1	30334	30334		59.368	41.222	1	2722200			18590	9821	13368	13469	18213	18213					-0.028313677143842142
GTMDIRHFF	9	Oxidation (M)	_GTM(Oxidation (M))DIRHFF_		GTM(1)DIRHFF		GTM(50)DIRHFF	0	0	1		RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant;ENSG00000244462|ENST00000374114|RBM12;ENST00000454607.5_1_20:34220607-34246883:-|nuORF;ENST00000352393.8_2_20:34220804-34246883:-|nuORF;ENST00000440240.5_1_20:34220804-34252800:-|nuORF	RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant	RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	380.9148864746094	3	380.514931	1138.52296	0.29175	0.00011102	0.2611	9.9354E-05	0.55285	0.00021037	380.51494855350666	58.229	0.76067	58.229	57.873	58.633	0					41	14	4	0	0	0	0.32966	1	20871	20871		49.527	40.782	1	6618100			18591	9821	13368	13470	18214	18214		444			-0.04075671576993045
GTMDIRHFF	9	Oxidation (M)	_GTM(Oxidation (M))DIRHFF_		GTM(1)DIRHFF		GTM(110)DIRHFF	0	0	1		RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant;ENSG00000244462|ENST00000374114|RBM12;ENST00000454607.5_1_20:34220607-34246883:-|nuORF;ENST00000352393.8_2_20:34220804-34246883:-|nuORF;ENST00000440240.5_1_20:34220804-34252800:-|nuORF	RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant	RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	380.9150085449219	3	380.514931	1138.52296	-0.33708	-0.00012826	0.13821	5.259E-05	-0.19887	-7.5673E-05	380.51496306172163	57.501	0.81611	58.25	57.762	58.578	0.74895					39	15	3	0	0	0	0.0096967	1	21647	21647		110.79	73.718	1	8727400			18592	9821	13368	13470	18215	18215		444			-0.04075671576993045
GTMPLRNIF	9	Unmodified	_GTMPLRNIF_					0	0	0		ENST00000593637.5_1_19:14674952-14675852:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	525.1818237304688	2	524.784044	1047.55354	-0.68653	-0.00036028	-0.12242	-6.4244E-05	-0.80895	-0.00042453	524.7839101860214	84.981	0.76538	84.981	84.596	85.362	0					25	14	2	0	0	0	0.14572	1	31072	31072		62.573	31.936	1	25519000			18593	2083	13369	13471	18216	18216					0.03166106808043878
GTMPLRNIF	9	Unmodified	_GTMPLRNIF_					0	0	0		ENST00000593637.5_1_19:14674952-14675852:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	525.183837890625	2	524.784044	1047.55354	-0.43472	-0.00022814	-0.14231	-7.468E-05	-0.57703	-0.00030281	524.783915102739	83.954	0.86891	84.694	84.407	85.276	0.73962					39	16	3	0	0	0	0.24324	1	31874	31874		45.7	28.613	1	22191000			18594	2083	13369	13471	18217	18217					0.03166106808043878
GTMPLRNIF	9	Oxidation (M)	_GTM(Oxidation (M))PLRNIF_		GTM(1)PLRNIF		GTM(65)PLRNIF	0	0	1		ENST00000593637.5_1_19:14674952-14675852:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	533.2747192382812	2	532.781502	1063.54845	-0.84051	-0.00044781	-0.031457	-1.676E-05	-0.87197	-0.00046457	532.7816303127935	84.922	0.66425	84.922	84.596	85.261	0					25	12	3	0	0	0	0.083712	1	31135	31135		65.235	29.108	1	3092400			18595	2083	13369	13472	18218	18218		78			0.01921802945435047
GTMPLRNIF	9	Oxidation (M)	_GTM(Oxidation (M))PLRNIF_		GTM(1)PLRNIF		GTM(69)PLRNIF	0	0	1		ENST00000593637.5_1_19:14674952-14675852:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	533.1815795898438	2	532.781502	1063.54845	-0.79002	-0.00042091	-0.18618	-9.9193E-05	-0.9762	-0.0005201	532.7815897077372	66.885	0.96556	67.621	67.138	68.104	0.73631					54	18	5	0	0	0	0.070665	1	25273	25273		69.105	32.978	1	31464000			18596	2083	13369	13472	18219	18219		78			0.01921802945435047
GTNDILRLF	9	Unmodified	_GTNDILRLF_					0	0	0		ENSG00000072778|ENST00000356839|ACADVL;nc|ENSG00000072778|P49748-3|ACADVL;nc|ENSG00000072778|P49748-2|ACADVL;ENST00000583850.5_1_17:7127146-7127844:+|nuORF	ENSG00000072778|ENST00000356839|ACADVL	ENSG00000072778|ENST00000356839|ACADVL	MULTI-MSMS	A375_MHC_IP_R1	1	525.1922607421875	2	524.792924	1047.57129	0.045327	2.3787E-05	-0.31845	-0.00016712	-0.27312	-0.00014333	524.7925171147707	113.9	0.51276	113.9	113.65	114.16	0					14	9	2	0	0	0	0.0092755	1	41783	41783		103.82	38.35	1	3394800			18597	1546	13370	13473	18220	18220					0.049411453345555856
GTNDILRLF	9	Unmodified	_GTNDILRLF_					0	0	0		ENSG00000072778|ENST00000356839|ACADVL;nc|ENSG00000072778|P49748-3|ACADVL;nc|ENSG00000072778|P49748-2|ACADVL;ENST00000583850.5_1_17:7127146-7127844:+|nuORF	ENSG00000072778|ENST00000356839|ACADVL	ENSG00000072778|ENST00000356839|ACADVL	MULTI-MSMS	A375_MHC_IP_R2	2	525.1923828125	2	524.792924	1047.57129	-0.28007	-0.00014698	0.241	0.00012648	-0.039072	-2.0505E-05	524.7930612097454	113.08	0.40872	113.79	113.46	113.87	0.70985					16	7	3	0	0	0	0.0096822	1	42623	42623		110.55	40.221	1	3969200			18598	1546	13370	13473	18221	18221					0.049411453345555856
GTNLKPKN	8	Unmodified	_GTNLKPKN_					0	0	0			REV__nc|ENSG00000184014|Q6IQ26-2|DENND5A	REV__nc|ENSG00000184014|Q6IQ26-2|DENND5A	MSMS	A375_MHC_IP_R2	2	436.3100891113281	2	436.253434	870.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.56	1	36.323	35.823	36.823	0.76338								0	0	0	0.16876	1	12904	12904		19.257	0	1		+		18599	21792	13371	13474	18222	18222					0.051889181002820806
GTNSPFYNEY	10	Unmodified	_GTNSPFYNEY_					0	0	0		ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	MULTI-SECPEP	A375_MHC_IP_R1	1	596.1723022460938	2	596.251286	1190.48802	-0.48831	-0.00029116	0.27805	0.00016579	-0.21026	-0.00012537	596.75301365055	38.529	0.35986	38.529	38.319	38.679	0					11	6	2	0	0	0	0.6774	1	13051	13051		27.629	7.1752	1	1822700			18600	9627	13372	13475	18223	18223					-0.09960635903939874
GTNVIKPILN	10	Unmodified	_GTNVIKPILN_					0	0	0			REV__tr|U7T8S4|U7T8S4_FUSNUPhzFfamilyphenazinebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00150PE=4SV=1	REV__tr|U7T8S4|U7T8S4_FUSNUPhzFfamilyphenazinebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00150PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	535.2235717773438	2	534.824224	1067.63389	-0.9706	-0.0005191	0.091313	4.8836E-05	-0.87929	-0.00047027	534.824071680466	26.011	0.35517	26.011	25.866	26.221	0					9	6	2	0	0	0	0.93594	1	7747	7747		4.897	3.4151	1	3338100	+		18601	28894	13373	13476	18224	18224					0.10278291402755713
GTPAPASFNE	10	Unmodified	_GTPAPASFNE_					0	0	0			REV__ENST00000438059.5_1_21:34914888-34914936:-|nuORF	REV__ENST00000438059.5_1_21:34914888-34914936:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	496.659912109375	2	495.729989	989.445425	-0.42658	-0.00021147	-0.044156	-2.1889E-05	-0.47074	-0.00023336	495.72992523929526	59.016	0.9655	59.016	58.633	59.599	0					54	18	4	0	0	0	0.69833	1	21122	21122		13.042	0	1	34200000	+		18602	24777	13374	13477	18225	18225					-0.04971986241525883
GTPLLGPQ	8	Unmodified	_GTPLLGPQ_					0	0	0		ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	MULTI-MSMS	A375_MHC_IP_R1	1	392.0779113769531	2	391.723978	781.433404	0.56936	0.00022303	0.25607	0.00010031	0.82543	0.00032334	391.72377950051634	48.668	0.40551	48.668	48.476	48.882	0					13	7	2	0	0	0	0.7256	1	17193	17193		26.884	0	1	1296400			18603	4807	13375	13478	18226	18226					0.033944418059491
GTPLLGPQ	8	Unmodified	_GTPLLGPQ_					0	0	0		ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	MULTI-MSMS	A375_MHC_IP_R2	2	392.1237487792969	2	391.723978	781.433404	-0.059545	-2.3325E-05	0.39798	0.0001559	0.33844	0.00013257	391.7238697341492	47.874	0.40482	48.636	48.378	48.783	0.76128					13	7	2	0	0	0	0.7256	1	17965	17965		26.884	0	1	1964200			18604	4807	13375	13478	18227	18227					0.033944418059491
GTPPFHVSW	9	Unmodified	_GTPPFHVSW_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;TTN|p.L14011*|1|0.26|ENSG00000155657|chr2:178618595-178618595|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	A375_MHC_IP_R2	2	514.6478881835938	2	514.253434	1026.49232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.37	1	128.61	128.11	129.11	0.23946								0	0	0	0.1535	1	50393	50393		15.847	2.3393	1				18605	6151;14694	13376	13479	18228	18228					-0.019870818997105744
GTQLRNTQW	9	Unmodified	_GTQLRNTQW_					0	0	0		nc|ENSG00000132932|Q9NTI2-3|ATP8A2;nc|ENSG00000132932|Q9NTI2-1|ATP8A2;ENSG00000132932|ENST00000381655|ATP8A2	nc|ENSG00000132932|Q9NTI2-3|ATP8A2	nc|ENSG00000132932|Q9NTI2-3|ATP8A2	MULTI-SECPEP	A375_MHC_IP_R2	2	551.9201049804688	2	552.283254	1102.55196	-1.228	-0.00067821	0.13472	7.4401E-05	-1.0933	-0.00060381	552.2833217429188	33.526	1.8276	34.278	32.975	34.803	0.75225					65	35	4	0	0	0	0.51395	1	12029	12029		31.268	31.268	1	74544000			18606	4464	13377	13480	18229	18229					0.004781890436561298
GTQVRREYRKF	11	Unmodified	_GTQVRREYRKF_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-SECPEP	A375_MHC_IP_R2	2	480.9994201660156	3	480.600386	1438.77933	-1.0588	-0.00050888	-0.44153	-0.0002122	-1.5004	-0.00072108	480.60004419508226	37.282	0.40832	38.053	37.867	38.275	0.7709					15	7	3	0	0	0	0.99916	1	13659	13659		2.4348	1.1051	1	4075500			18607	14591	13378	13481	18230	18230					0.07749147251638533
GTQWASSLLFH	11	Unmodified	_GTQWASSLLFH_					0	0	0			REV__ENST00000575165.6_1_17:19314663-19315981:+|nuORF	REV__ENST00000575165.6_1_17:19314663-19315981:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	416.1585388183594	3	416.212017	1245.61422	0.64036	0.00026653	-0.39456	-0.00016422	0.2458	0.0001023	416.2118473378696	49.444	1.0174	49.444	49.084	50.101	0					43	19	4	0	0	0	0.72949	1	17607	17607		4.7159	0	1	4654600	+		18608	26304	13379	13482	18231	18231					0.0012391539198688406
GTRCMVVYI	9	Unmodified	_GTRCMVVYI_					0	0	0			REV__ENST00000530533.5_1_11:134126456-134129738:+|nuORF	REV__ENST00000530533.5_1_11:134126456-134129738:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	521.2100830078125	2	521.26463	1040.51471	-0.38454	-0.00020045	0.36072	0.00018803	-0.02382	-1.2416E-05	521.2647896960359	105.5	1.9369	105.5	105.15	107.08	0					88	37	4	0	0	0	0.17328	3	38707	38687;38707;38833		39.957	39.957	1	70149000	+		18609	19757	13380	13483	18232;18233;18234	18233					-0.0039294181794957694
GTRKKLWNV	9	Unmodified	_GTRKKLWNV_					0	0	0			REV__ENSG00000185624|ENST00000331483|P4HB	REV__ENSG00000185624|ENST00000331483|P4HB	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2081909179688	2	551.330008	1100.64546	-0.55137	-0.00030399	-0.96829	-0.00053385	-1.5197	-0.00083784	551.3293066953657	73.674	0.25288	73.674	73.539	73.792	0					7	4	2	0	0	0	0.65246	1	26874	26874		21.747	10.252	1	530160	+		18610	21906	13381	13484	18235	18235					0.09916533216733114
GTRRGRRW	8	Unmodified	_GTRRGRRW_					0	0	0		ENST00000376357.1_1_X:48935155-48937742:-|nuORF	ENST00000376357.1_1_X:48935155-48937742:-|nuORF	ENST00000376357.1_1_X:48935155-48937742:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	522.2218017578125	2	522.79974	1043.58493	-0.84166	-0.00044002	0.81666	0.00042695	-0.025	-1.307E-05	522.800022486314	57.878	0.60469	58.627	58.375	58.98	0.74894					15	11	2	0	0	0	0.97021	1	22005	22005		6.7232	6.7232	1	2501500			18611	11282	13382	13485	18236	18236					0.064878606770435
GTRSVNLSW	9	Unmodified	_GTRSVNLSW_					0	0	0		ENST00000550406.1_1_17:40282423-40282585:-|nuORF	ENST00000550406.1_1_17:40282423-40282585:-|nuORF	ENST00000550406.1_1_17:40282423-40282585:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	510.6665344238281	2	510.267073	1018.51959	-0.91316	-0.00046596	0.38847	0.00019822	-0.52469	-0.00026773	510.267172371433	54.863	0.81466	55.613	55.219	56.034	0.75075					29	15	3	0	0	0	0.24548	1	20695	20695		36.127	0	1	3671300			18612	13369	13383	13486	18237	18237					0.011074016406610099
GTRVRSSLVY	10	Unmodified	_GTRVRSSLVY_					0	0	0			REV__ENSG00000166165|ENST00000348956|CKB;REV__nc|ENSG00000237289|P12532-2|CKMT1A	REV__ENSG00000166165|ENST00000348956|CKB	MSMS	A375_MHC_IP_R1	1	379.91961669921875	3	379.884012	1136.63021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.343	1	37.343	36.843	37.843	0								0	0	0	0.15496	1	12580	12580		4.7159	0.52642	1		+		18613	20655;27513	13384	13487	18238	18238					0.06735621628899935
GTSAGVHVY	9	Unmodified	_GTSAGVHVY_					0	0	0		ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4	ENSG00000141076|ENST00000314423|UTP4	ENSG00000141076|ENST00000314423|UTP4	MULTI-SECPEP	A375_MHC_IP_R1	1	445.9609375	2	445.721967	889.429381	-0.24356	-0.00010856	0.58526	0.00026086	0.3417	0.0001523	445.72191080317873	27.795	0.40373	27.795	27.684	28.088	0					12	7	3	0	0	0	0.60012	1	8456	8456		18.135	10.225	1	1750200			18614	5212	13385	13488	18239	18239					-0.01975647687777382
GTSGTLRPW	9	Unmodified	_GTSGTLRPW_					0	0	0		ENST00000262435.13_1_17:62658063-62658153:-|nuORF;ENST00000579692.1_1_17:29335545-29335704:+|nuORF	ENST00000262435.13_1_17:62658063-62658153:-|nuORF	ENST00000262435.13_1_17:62658063-62658153:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	488.1561279296875	2	487.756341	973.498129	-0.045349	-2.2119E-05	-0.54369	-0.00026519	-0.58903	-0.00028731	487.7560643967723	47.905	0.50483	47.905	47.718	48.223	0					24	9	3	0	0	0	0.05021	1	16889	16889		78.728	40.754	1	6534600			18615	10303	13386	13489	18240	18240					0.010320166119413443
GTSPREIDIY	10	Unmodified	_GTSPREIDIY_					0	0	0			REV__nc|ENSG00000132849|Q8NI35-4|PATJ	REV__nc|ENSG00000132849|Q8NI35-4|PATJ	MULTI-SECPEP	A375_MHC_IP_R2	2	575.1232299804688	2	575.790578	1149.5666	-0.33749	-0.00019432	-1.011	-0.00058215	-1.3485	-0.00077647	575.7879330526405	50.504	0.71014	51.258	50.854	51.564	0.75406					16	13	2	0	0	0	0.72086	1	18850	18850		8.7454	0	1	1124300	+		18616	18687	13387	13490	18241	18241					-0.002197835988454244
GTSRFLPTV	9	Unmodified	_GTSRFLPTV_					0	0	0		ENST00000498438.1_1_2:176973927-176974179:+|nuORF;ENST00000490088.2_1_2:176973927-176983777:+|nuORF;ENST00000549469.1_1_2:176973927-176983694:+|nuORF	ENST00000498438.1_1_2:176973927-176974179:+|nuORF	ENST00000498438.1_1_2:176973927-176974179:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	489.1600036621094	2	489.274367	976.53418	-0.43324	-0.00021197	-1.2642	-0.00061856	-1.6975	-0.00083053	489.2732150295154	31.095	1.3166	31.095	30.503	31.819	0					35	25	3	0	0	0	0.47368	1	10027	10027		26.884	4.1474	1	1599200			18617	12643	13388	13491	18242	18242					0.04497473788808293
GTSSVARAW	9	Unmodified	_GTSSVARAW_					0	0	0		ENSG00000139514|ENST00000380752|SLC7A1;ENSG00000003989|ENST00000494857|SLC7A2;nc|ENSG00000003989|P52569-2|SLC7A2;nc|ENSG00000003989|P52569-3|SLC7A2	ENSG00000139514|ENST00000380752|SLC7A1;ENSG00000003989|ENST00000494857|SLC7A2	ENSG00000139514|ENST00000380752|SLC7A1	MULTI-SECPEP	A375_MHC_IP_R1	1	468.1404724121094	2	467.740691	933.466829	-0.39759	-0.00018597	-0.025343	-1.1854E-05	-0.42294	-0.00019782	467.74062067376013	33.124	0.45544	33.124	32.887	33.342	0					19	8	3	0	0	0	0.27742	1	10783	10783		51.63	17.228	1	5344600			18618	5082;862	13389	13492	18243	18243					-0.0025655642215269836
GTSSVARAW	9	Unmodified	_GTSSVARAW_					0	0	0		ENSG00000139514|ENST00000380752|SLC7A1;ENSG00000003989|ENST00000494857|SLC7A2;nc|ENSG00000003989|P52569-2|SLC7A2;nc|ENSG00000003989|P52569-3|SLC7A2	ENSG00000139514|ENST00000380752|SLC7A1;ENSG00000003989|ENST00000494857|SLC7A2	ENSG00000139514|ENST00000380752|SLC7A1	MULTI-SECPEP	A375_MHC_IP_R2	2	468.14031982421875	2	467.740691	933.466829	-0.66145	-0.00030939	0.021194	9.9131E-06	-0.64026	-0.00029947	467.7406492874405	32.35	0.45937	33.087	32.857	33.317	0.73692					17	8	3	0	0	0	0.16764	1	11515	11515		60.074	18.234	1	5669300			18619	5082;862	13389	13492	18244	18244					-0.0025655642215269836
GTSTTTVFNF	10	Unmodified	_GTSTTTVFNF_					0	0	0		ENSG00000120129|ENST00000239223|DUSP1	ENSG00000120129|ENST00000239223|DUSP1	ENSG00000120129|ENST00000239223|DUSP1	MULTI-MSMS	A375_MHC_IP_R2	2	537.6669311523438	2	537.758746	1073.50294	-1.1438	-0.00061506	-0.11571	-6.2225E-05	-1.2595	-0.00067729	537.7586413673091	24.115	0.76368	24.759	24.398	25.161	0.64368					22	14	2	0	0	0	0.60608	1	8041	8041		20.415	3.3016	1	2522200			18620	3650	13390	13493	18245	18245					-0.03087144035930578
GTTGIVLVNK	10	Unmodified	_GTTGIVLVNK_					0	0	0			REV__ENSG00000170967|ENST00000302259|DDI1	REV__ENSG00000170967|ENST00000302259|DDI1	MULTI-SECPEP	A375_MHC_IP_R1	1	501.61553955078125	2	501.303124	1000.5917	0.022246	1.1152E-05	-0.34323	-0.00017206	-0.32098	-0.00016091	501.3029474634429	45.216	0.45334	45.216	45.081	45.534	0					14	8	3	0	0	0	0.69172	1	15767	15767		32.305	11.852	1	1304600	+		18621	21035	13391	13494	18246	18246					0.09142315994381534
GTTGIVLVNK	10	Unmodified	_GTTGIVLVNK_					0	0	0			REV__ENSG00000170967|ENST00000302259|DDI1	REV__ENSG00000170967|ENST00000302259|DDI1	MULTI-SECPEP	A375_MHC_IP_R2	2	501.65576171875	2	501.303124	1000.5917	-0.51944	-0.0002604	-0.16759	-8.4016E-05	-0.68704	-0.00034441	501.30297667259174	44.291	0.40593	45.06	44.782	45.188	0.7691					11	7	2	0	0	0	0.69172	1	16470	16470		25.399	9.5521	1	1683700	+		18622	21035	13391	13494	18247	18247					0.09142315994381534
GTTKPVNW	8	Unmodified	_GTTKPVNW_					0	0	0		nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	MULTI-MSMS	A375_MHC_IP_R1	1	452.1399841308594	2	451.74016	901.465767	-0.40326	-0.00018217	0.22957	0.00010371	-0.17369	-7.8461E-05	451.74014818299366	32.746	0.65596	32.746	32.434	33.09	0					24	12	3	0	0	0	0.092435	3	10600	10570;10600;10714		96.285	45.43	1	4747200			18623	3103	13392	13495	18248;18249;18250	18249					0.01109229208952911
GTTKPVNW	8	Unmodified	_GTTKPVNW_					0	0	0		nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	MULTI-MSMS	A375_MHC_IP_R2	2	452.13995361328125	2	451.74016	901.465767	-0.27896	-0.00012602	0.069753	3.151E-05	-0.20921	-9.4508E-05	451.74018038178696	32.043	0.50614	32.78	32.504	33.01	0.73692					17	9	2	0	0	0	0.15393	2	11353	11353;11395		85.272	30.498	1	6256300			18624	3103	13392	13495	18251;18252	18251					0.01109229208952911
GTTRRPFDA	9	Unmodified	_GTTRRPFDA_					0	0	0		nc|ENSG00000132321|Q86XH1-5|IQCA1;ENSG00000132321|ENST00000409907|IQCA1	nc|ENSG00000132321|Q86XH1-5|IQCA1	nc|ENSG00000132321|Q86XH1-5|IQCA1	MULTI-MSMS	A375_MHC_IP_R1	1	511.177001953125	2	510.764697	1019.51484	-0.22666	-0.00011577	2.741	0.0014	2.5143	0.0012842	510.76633808658283	21.24	0.40609	21.24	21.048	21.454	0					11	7	2	0	0	0	0.6898	1	5504	5504		7.9102	1.187	1	762710			18625	4391	13393	13496	18253	18253					0.0058651749790215035
GTTTRVQSPW	10	Unmodified	_GTTTRVQSPW_					0	0	0			REV__ENST00000591903.1_2_17:26976053-26976209:-|nuORF	REV__ENST00000591903.1_2_17:26976053-26976209:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	567.1902465820312	2	566.790912	1131.56727	-0.70469	-0.00039941	0.0096298	5.4581E-06	-0.69506	-0.00039396	566.7908026962789	57.652	0.71118	58.401	57.968	58.679	0.74894					32	13	3	0	0	0	0.70925	1	21758	21758		8.1555	0	1	20603000	+		18626	26448	13394	13497	18254	18254					0.006750558408612051
GTTWALAFF	9	Unmodified	_GTTWALAFF_					0	0	0		ENST00000569839.1_1_16:57608733-57625590:+|nuORF;ENSG00000159618|ENST00000349457|ADGRG5	ENST00000569839.1_1_16:57608733-57625590:+|nuORF	ENST00000569839.1_1_16:57608733-57625590:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.1640625	2	507.258185	1012.50182	-0.35995	-0.00018259	-3.2216	-0.0016342	-3.5815	-0.0018168	507.25562883564606	63.613	0.81625	63.613	63.274	64.09	0					27	15	3	0	0	0	0.43707	1	22937	22937		36.044	7.5574	1	1366100			18627	6379	13395	13498	18255	18255					-0.003933136141881732
GTTWALAFF	9	Unmodified	_GTTWALAFF_					0	0	0		ENST00000569839.1_1_16:57608733-57625590:+|nuORF;ENSG00000159618|ENST00000349457|ADGRG5	ENST00000569839.1_1_16:57608733-57625590:+|nuORF	ENST00000569839.1_1_16:57608733-57625590:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	507.16339111328125	2	507.258185	1012.50182	-0.70773	-0.000359	-0.66722	-0.00033845	-1.3749	-0.00069745	507.760256983649	63.037	0.85997	63.779	63.18	64.04	0.74263					19	16	2	0	0	0	0.46038	1	23775	23775		21.747	0	1	1325900			18628	6379	13395	13498	18256	18256					-0.003933136141881732
GTTWPSAVV	9	Unmodified	_GTTWPSAVV_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-MSMS	A375_MHC_IP_R1	1	459.62030029296875	2	459.239993	916.465432	-0.30534	-0.00014022	0.013723	6.3019E-06	-0.29161	-0.00013392	459.2398791375979	40.883	0.65569	40.883	40.559	41.215	0					25	12	3	0	0	0	0.067501	1	14159	14159		57.471	1.2943	1	7565500			18629	9519	13396	13499	18257	18257					0.0038580948910293955
GTTWPSAVV	9	Unmodified	_GTTWPSAVV_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-SECPEP	A375_MHC_IP_R2	2	459.6393737792969	2	459.239993	916.465432	-0.43165	-0.00019823	0.15102	6.9355E-05	-0.28063	-0.00012888	459.23995324399425	40.14	0.65834	40.914	40.575	41.234	0.77451					28	12	3	0	0	0	0.39388	1	14808	14808		32.305	6.0373	1	7341300			18630	9519	13396	13499	18258	18258					0.0038580948910293955
GTVARWPGF	9	Unmodified	_GTVARWPGF_					0	0	0		ENST00000533107.3_1_19:1799652-1806029:-|nuORF	ENST00000533107.3_1_19:1799652-1806029:-|nuORF	ENST00000533107.3_1_19:1799652-1806029:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	496.160888671875	2	495.761426	989.5083	-0.34755	-0.0001723	-0.8119	-0.00040251	-1.1595	-0.00057481	495.7609049493611	104.48	0.56058	104.48	104.08	104.64	0					24	10	3	0	0	0	0.60012	1	38328	38328		18.135	1.1927	1	3021700			18631	13193	13397	13500	18259	18259					0.013126243371857527
GTVDLREMLA	10	Unmodified	_GTVDLREMLA_					0	0	0		ENSG00000104331|ENST00000262644|BPNT2	ENSG00000104331|ENST00000262644|BPNT2	ENSG00000104331|ENST00000262644|BPNT2	MSMS	A375_MHC_IP_R1	1	552.71337890625	2	552.789524	1103.56449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.881	1	43.881	43.381	44.381	0								0	0	0	0.15288	1	15283	15283		11.495	2.1116	1				18632	2500	13398	13501	18260	18260					0.016854643916758505
GTVEKEATF	9	Unmodified	_GTVEKEATF_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;CSDE1|p.N440S|1|0.1|ENSG00000009307|chr1:114730295-114730295|T/C|missense_variant	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	A375_MHC_IP_R1	1	491.64776611328125	2	491.248015	980.481476	-0.76372	-0.00037518	0.40569	0.00019929	-0.35803	-0.00017588	491.2481467428598	29.207	0.40685	29.207	28.996	29.403	0					18	7	3	0	0	0	0.0098926	1	9101	9101		118.07	32.796	1	8547200			18633	966	13399	13502	18261	18261					-0.009545290646542526
GTVEKEATF	9	Unmodified	_GTVEKEATF_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;CSDE1|p.N440S|1|0.1|ENSG00000009307|chr1:114730295-114730295|T/C|missense_variant	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-SECPEP	A375_MHC_IP_R2	2	491.64752197265625	2	491.248015	980.481476	-1.0346	-0.00050824	0.16946	8.3247E-05	-0.86512	-0.00042499	491.24788483276615	28.539	0.35354	29.229	29.022	29.375	0.69017					10	6	3	0	0	0	0.011191	1	9855	9855		121.53	49.612	1	15387000			18634	966	13399	13502	18262	18262					-0.009545290646542526
GTVEKQCKLNN	11	Unmodified	_GTVEKQCKLNN_					0	0	0			REV__chrX:52862640-52864775|101|30.25|0.51|5.88|-|0|XAGE3,XAGE3|1	REV__chrX:52862640-52864775|101|30.25|0.51|5.88|-|0|XAGE3,XAGE3|1	MULTI-SECPEP	A375_MHC_IP_R2	2	616.7119750976562	2	617.316437	1232.61832	-1.0291	-0.00063531	-1.5804	-0.00097562	-2.6096	-0.0016109	617.3155161192291	38.512	0.45531	39.286	38.946	39.401	0.77451					11	8	2	0	0	0	0.9754	1	14232	14232		8.1555	0	1	1449800	+		18635	15782	13400	13503	18263	18263					0.011316368234020047
GTVIFVPEE	9	Unmodified	_GTVIFVPEE_					0	0	0			REV__ENSG00000181588|ENST00000402693|MEX3D	REV__ENSG00000181588|ENST00000402693|MEX3D	MULTI-MSMS	A375_MHC_IP_R1	1	496.71295166015625	2	495.760758	989.506963	-0.34755	-0.0001723	0.53694	0.00026619	0.18938	9.3889E-05	495.7609049493611	104.48	0.56058	104.48	104.08	104.64	0					24	10	3	0	0	0	0.55818	1	38289	38289		16.942	3.4344	1	3021700	+		18636	21658	13401	13504	18264	18264					0.011789454577638026
GTVISVPSECL	11	Unmodified	_GTVISVPSECL_					0	0	0			REV__nc|ENSG00000103310|Q05996-2|ZP2	REV__nc|ENSG00000103310|Q05996-2|ZP2	MSMS	A375_MHC_IP_R1	1	368.90521240234375	3	368.858363	1103.55326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.772	1	23.772	23.272	24.272	0								0	0	0	0.16124	1	6598	6598		6.6235	0.3891	1		+		18637	17268	13402	13505	18265	18265					0.005626422975410605
GTVITPDTW	9	Unmodified	_GTVITPDTW_					0	0	0		ENSG00000119878|ENST00000238892|CRIPT;ENST00000486447.1_1_2:46844062-46851363:+|nuORF	ENSG00000119878|ENST00000238892|CRIPT	ENSG00000119878|ENST00000238892|CRIPT	MULTI-SECPEP	A375_MHC_IP_R1	1	495.68023681640625	2	495.250557	988.486562	-0.30126	-0.0001492	-0.054566	-2.7024E-05	-0.35583	-0.00017623	495.2505106708445	88.332	1.069	88.332	87.798	88.867	0					57	20	4	0	0	0	7.2871E-09	1	32508	32508		180.01	112.67	1	43639000			18638	3628	13403	13506	18266	18266					-0.00814225202043417
GTVITPDTW	9	Unmodified	_GTVITPDTW_					0	0	0		ENSG00000119878|ENST00000238892|CRIPT;ENST00000486447.1_1_2:46844062-46851363:+|nuORF	ENSG00000119878|ENST00000238892|CRIPT	ENSG00000119878|ENST00000238892|CRIPT	MULTI-MSMS	A375_MHC_IP_R2	2	495.6865539550781	2	495.250557	988.486562	-0.38635	-0.00019134	0.057559	2.8506E-05	-0.32879	-0.00016283	495.2505646986111	87.661	1.0113	88.392	87.711	88.722	0.7318					53	19	4	0	0	0	0.026268	1	33428	33428		78.149	36.055	1	41877000			18639	3628	13403	13506	18267	18267					-0.00814225202043417
GTVKLWDLK	9	Unmodified	_GTVKLWDLK_					0	0	0		nc|ENSG00000109670|Q969H0-4|FBXW7;nc|ENSG00000109670|Q969H0-2|FBXW7;ENSG00000109670|ENST00000281708|FBXW7	nc|ENSG00000109670|Q969H0-4|FBXW7	nc|ENSG00000109670|Q969H0-4|FBXW7	MULTI-SECPEP	A375_MHC_IP_R2	2	353.2535095214844	3	353.878087	1058.61243	-0.46887	-0.00016592	0.18231	6.4514E-05	-0.28656	-0.00010141	353.87797076019433	51.636	0.55986	52.388	52.169	52.729	0.75225					20	10	3	0	0	0	0.74169	1	19478	19478		7.9454	2.162	1	2260100			18640	2882	13404	13507	18268	18268					0.08546906374044738
GTVLKIITF	9	Unmodified	_GTVLKIITF_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3	nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	A375_MHC_IP_R1	1	496.3160400390625	2	496.312961	990.611368	-0.34912	-0.00017327	0.32961	0.00016359	-0.019512	-9.6841E-06	496.31303959544675	104.45	0.91363	104.45	104.08	104.99	0					48	17	4	0	0	0	0.027818	1	38438	38438		76.825	26.892	1	18883000			18641	998;3580	13405	13508	18269	18269					0.11568692005118919
GTVLKIITF	9	Unmodified	_GTVLKIITF_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3	nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	A375_MHC_IP_R2	2	496.7124328613281	2	496.312961	990.611368	-0.44429	-0.00022051	0.022654	1.1243E-05	-0.42164	-0.00020926	496.31288250016587	103.43	0.86388	104.2	103.84	104.7	0.76428					46	16	4	0	0	0	0.0042961	1	39110	39110		136.39	56.796	1	21003000			18642	998;3580	13405	13508	18270	18270					0.11568692005118919
GTVLKIITF	9	Unmodified	_GTVLKIITF_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3	nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	A375_MHC_IP_R2	2	992.931396484375	1	991.618645	990.611368	0.029764	2.9514E-05	-0.13687	-0.00013572	-0.1071	-0.00010621	991.6187311094026	103.43	0.25529	104.2	104.04	104.3	0.76428					7	4	2	0	0	0	0.57432	1	39140	39140		16.149	5.3252	1	1395400			18643	998;3580	13405	13508	18271	18271					0.11568692005118919
GTVVARSF	8	Unmodified	_GTVVARSF_					0	0	0			REV__nc|ENSG00000164830|Q8N573-3|OXR1	REV__nc|ENSG00000164830|Q8N573-3|OXR1	MULTI-SECPEP	A375_MHC_IP_R1	1	418.3207092285156	2	418.734877	835.455202	0.18154	7.6017E-05	0.032777	1.3725E-05	0.21432	8.9741E-05	418.7347396704844	47.42	0.55897	47.42	47.159	47.718	0					14	10	2	0	0	0	0.81376	1	16648	16648		32.305	10.559	1	1467800	+		18644	20520	13406	13509	18272	18272					0.030892465545207415
GTVVARSF	8	Unmodified	_GTVVARSF_					0	0	0			REV__nc|ENSG00000164830|Q8N573-3|OXR1	REV__nc|ENSG00000164830|Q8N573-3|OXR1	MULTI-SECPEP	A375_MHC_IP_R2	2	417.9678955078125	2	418.734877	835.455202	0.060516	2.534E-05	0.34436	0.0001442	0.40488	0.00016954	418.7348514766411	46.457	0.45832	47.222	46.957	47.416	0.76519					11	8	2	0	0	0	0.84748	1	17395	17395		28.487	3.813	1	1453400	+		18645	20520	13406	13509	18273	18273					0.030892465545207415
GTVYEDLRY	9	Unmodified	_GTVYEDLRY_					0	0	0		nc|ENSG00000175063|O00762-2|UBE2C;chr20:45813290-45813437|450|11.26|0.62|4.18|+|ENST00000372568|UBE2C,UBE2C;ENSG00000175063|ENST00000356455|UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	MULTI-MSMS	A375_MHC_IP_R1	1	558.167236328125	2	558.272021	1114.52949	-0.54267	-0.00030296	-0.075293	-4.2034E-05	-0.61797	-0.00034499	558.2719204585635	57.949	0.96332	57.949	57.568	58.531	0					60	18	5	0	0	0	0.16945	1	20944	20944		40.239	16.219	1	63628000			18646	468	13407	13510	18274	18274					-0.02319455144629501
GTVYEDLRY	9	Unmodified	_GTVYEDLRY_					0	0	0		nc|ENSG00000175063|O00762-2|UBE2C;chr20:45813290-45813437|450|11.26|0.62|4.18|+|ENST00000372568|UBE2C,UBE2C;ENSG00000175063|ENST00000356455|UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	MULTI-MSMS	A375_MHC_IP_R2	2	558.6712646484375	2	558.272021	1114.52949	-1.0919	-0.0006096	0.18127	0.0001012	-0.91067	-0.0005084	558.2720459987645	57.248	0.76601	57.997	57.661	58.427	0.74894					50	14	5	0	0	0	0.029064	1	21588	21588		75.761	30.061	1	56953000			18647	468	13407	13510	18275	18275					-0.02319455144629501
GTWIGKGTERW	11	Unmodified	_GTWIGKGTERW_					0	0	0		ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	MULTI-SECPEP	A375_MHC_IP_R1	1	646.2332763671875	2	645.833111	1289.65167	-0.27764	-0.00017931	0.17141	0.0001107	-0.10623	-6.8605E-05	645.8331917480264	47.67	0.45327	47.67	47.467	47.92	0					16	8	3	0	0	0	0.10294	1	16789	16789		64.688	40.898	1	3320400			18648	7989	13408	13511	18276	18276					0.01843006657600199
GTWIGKGTERW	11	Unmodified	_GTWIGKGTERW_					0	0	0		ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	MULTI-SECPEP	A375_MHC_IP_R2	2	646.2330322265625	2	645.833111	1289.65167	-0.49074	-0.00031694	0.41833	0.00027017	-0.07241	-4.6765E-05	646.3350166521818	46.807	0.4057	47.568	47.361	47.766	0.76128					15	7	3	0	0	0	0.50454	1	17563	17563		47.053	36.979	1	3901000			18649	7989	13408	13511	18277	18277					0.01843006657600199
GTWLDAPTVEE	11	Unmodified	_GTWLDAPTVEE_					0	0	0			REV__ENST00000404295.7_1_16:4519400-4524561:-|nuORF	REV__ENST00000404295.7_1_16:4519400-4524561:-|nuORF	MSMS	A375_MHC_IP_R2	2	609.5485229492188	2	609.287868	1216.56118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.927	1	83.667	83.167	84.167	0.73962								0	0	0	0.16191	1	31511	31511		8.7454	3.0136	1		+		18650	24424	13409	13512	18278	18278					-0.03843507181318273
GTWLPSRAEW	10	Unmodified	_GTWLPSRAEW_					0	0	0		ENSG00000149313|ENST00000278618|AASDHPPT;nc|ENSG00000149313|Q9NRN7-2|AASDHPPT	ENSG00000149313|ENST00000278618|AASDHPPT	ENSG00000149313|ENST00000278618|AASDHPPT	MULTI-SECPEP	A375_MHC_IP_R1	1	601.1900634765625	2	601.80128	1201.58801	-0.56852	-0.00034214	-0.21447	-0.00012907	-0.78299	-0.0004712	601.8008545566165	84.59	0.5627	84.59	84.341	84.904	0					25	10	3	0	0	0	0.64789	1	30933	30933		32.037	9.3012	1	6845000			18651	5801	13410	13513	18279	18279					-0.004723537794689037
GTWLPSRAEW	10	Unmodified	_GTWLPSRAEW_					0	0	0		ENSG00000149313|ENST00000278618|AASDHPPT;nc|ENSG00000149313|Q9NRN7-2|AASDHPPT	ENSG00000149313|ENST00000278618|AASDHPPT	ENSG00000149313|ENST00000278618|AASDHPPT	MULTI-MSMS	A375_MHC_IP_R2	2	602.2010498046875	2	601.80128	1201.58801	-0.42365	-0.00025496	-0.15036	-9.0487E-05	-0.57402	-0.00034544	601.8011325266154	83.829	0.66576	84.569	84.305	84.971	0.73962					27	12	3	0	0	0	0.094079	1	31872	31872		64.927	35.845	1	6437400			18652	5801	13410	13513	18280	18280					-0.004723537794689037
GTWLWFLL	8	Unmodified	_GTWLWFLL_					0	0	0			REV__ENST00000343823.10_2_8:37986318-37986411:+|nuORF	REV__ENST00000343823.10_2_8:37986318-37986411:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	518.6863403320312	2	518.286746	1034.55894	-0.76655	-0.0003973	-0.61175	-0.00031706	-1.3783	-0.00071436	518.2864145497047	106.65	0.71201	107.41	107.04	107.75	0.75977					32	13	3	0	0	0	0.7338	1	40247	40247		24.674	5.4169	1	15118000	+		18653	23753	13411	13514	18281	18281					0.04304153662178578
GTWTGEQPH	9	Unmodified	_GTWTGEQPH_					0	0	0		nc|ENSG00000144152|Q53RD9-2|FBLN7;nc|ENSG00000144152|Q53RD9-4|FBLN7;ENSG00000144152|ENST00000331203|FBLN7;ENST00000472377.1_1_2:112910832-112933421:+|nuORF;nc|ENSG00000144152|Q53RD9-3|FBLN7	nc|ENSG00000144152|Q53RD9-2|FBLN7	nc|ENSG00000144152|Q53RD9-2|FBLN7	MULTI-SECPEP	A375_MHC_IP_R1	1	507.1274108886719	2	506.727781	1011.44101	-0.55824	-0.00028287	-0.29309	-0.00014851	-0.85132	-0.00043139	506.7276562973374	27.057	0.45283	27.057	26.878	27.331	0					19	8	3	0	0	0	0.65527	1	8161	8161		22.736	2.3217	1	6669000			18654	14656	13412	13515	18282	18282					-0.06425450664437449
GTYAGPVLW	9	Unmodified	_GTYAGPVLW_					0	0	0		nc|ENSG00000174227|Q5H8A4-3|PIGG;nc|ENSG00000174227|Q5H8A4-2|PIGG;ENSG00000174227|ENST00000453061|PIGG;ENST00000513239.5_1_4:527492-533155:+|nuORF	nc|ENSG00000174227|Q5H8A4-3|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-MSMS	A375_MHC_IP_R1	1	482.6497802734375	2	482.25036	962.486168	-0.13228	-6.3791E-05	-0.32967	-0.00015898	-0.46195	-0.00022277	482.25016064856635	111.75	0.66234	111.75	111.41	112.08	0					26	12	3	0	0	0	0.0098247	1	40952	40952		114.94	74.495	1	2919300			18655	7863	13413	13516	18283	18283					0.003423998687594576
GTYAGPVLW	9	Unmodified	_GTYAGPVLW_					0	0	0		nc|ENSG00000174227|Q5H8A4-3|PIGG;nc|ENSG00000174227|Q5H8A4-2|PIGG;ENSG00000174227|ENST00000453061|PIGG;ENST00000513239.5_1_4:527492-533155:+|nuORF	nc|ENSG00000174227|Q5H8A4-3|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-SECPEP	A375_MHC_IP_R1	1	963.2243041992188	1	963.493444	962.486168	0.311	0.00029965	-0.46154	-0.00044469	-0.15054	-0.00014504	963.4929938293936	111.78	0.81516	111.78	111.36	112.18	0					41	15	4	0	0	0	0.01105	1	40994	40994		129.2	74.427	1	21320000			18656	7863	13413	13516	18284	18284					0.003423998687594576
GTYAGPVLW	9	Unmodified	_GTYAGPVLW_					0	0	0		nc|ENSG00000174227|Q5H8A4-3|PIGG;nc|ENSG00000174227|Q5H8A4-2|PIGG;ENSG00000174227|ENST00000453061|PIGG;ENST00000513239.5_1_4:527492-533155:+|nuORF	nc|ENSG00000174227|Q5H8A4-3|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-MSMS	A375_MHC_IP_R2	2	482.6502685546875	2	482.25036	962.486168	-0.40477	-0.0001952	0.33417	0.00016115	-0.070601	-3.4047E-05	482.2503979529774	110.89	0.6617	111.62	111.29	111.96	0.73692					26	12	3	0	0	0	0.0096264	1	41810	41810		109.63	69.181	1	4594600			18657	7863	13413	13516	18285	18285					0.003423998687594576
GTYAGPVLW	9	Unmodified	_GTYAGPVLW_					0	0	0		nc|ENSG00000174227|Q5H8A4-3|PIGG;nc|ENSG00000174227|Q5H8A4-2|PIGG;ENSG00000174227|ENST00000453061|PIGG;ENST00000513239.5_1_4:527492-533155:+|nuORF	nc|ENSG00000174227|Q5H8A4-3|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-MSMS	A375_MHC_IP_R2	2	963.1937866210938	1	963.493444	962.486168	0.078815	7.5937E-05	0.030294	2.9188E-05	0.10911	0.00010513	963.4933070700076	110.92	0.86718	111.66	111.24	112.11	0.73692					39	16	4	0	0	0	0.0094581	1	41856	41856		106.85	55.99	1	21126000			18658	7863	13413	13516	18286	18286					0.003423998687594576
GTYENLIHVW	10	Unmodified	_GTYENLIHVW_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-MSMS	A375_MHC_IP_R1	1	616.7088623046875	2	616.308938	1230.60332	-0.28847	-0.00017778	-0.27095	-0.00016699	-0.55942	-0.00034477	616.3089414337481	101.22	0.65883	101.22	100.89	101.55	0					28	12	3	0	0	0	0.0070192	1	37188	37188		168.66	118.73	1	3681400			18659	4341	13414	13517	18287	18287					-0.0027548698228656576
GTYENLIHVW	10	Unmodified	_GTYENLIHVW_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-MSMS	A375_MHC_IP_R2	2	617.4859008789062	2	616.308938	1230.60332	-0.44732	-0.00027569	-0.047543	-2.9301E-05	-0.49486	-0.00030499	616.308946804565	100.42	0.66543	101.18	100.88	101.54	0.76278					26	12	3	0	0	0	0.53116	1	38059	38059		37.974	23.136	1	3467900			18660	4341	13414	13517	18288	18288					-0.0027548698228656576
GTYMGHTGAVW	11	Oxidation (M)	_GTYM(Oxidation (M))GHTGAVW_		GTYM(1)GHTGAVW		GTYM(93)GHTGAVW	0	0	1		ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32688150-32694122:+|nuORF;ENST00000489353.5_1_1:32688042-32691823:+|nuORF	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-MSMS	A375_MHC_IP_R1	1	598.663330078125	2	598.263673	1194.51279	-0.27163	-0.00016251	2.8347	0.0016959	2.563	0.0015334	598.2653579337637	42.652	1.1643	42.652	41.828	42.993	0					63	22	3	0	0	0	0.010664	1	14559	14559		92.653	69.505	1	12379000			18661	1797	13415	13518	18289	18289		61			-0.07668279302220071
GTYMGHTGAVW	11	Oxidation (M)	_GTYM(Oxidation (M))GHTGAVW_		GTYM(1)GHTGAVW		GTYM(120)GHTGAVW	0	0	1		ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32688150-32694122:+|nuORF;ENST00000489353.5_1_1:32688042-32691823:+|nuORF	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-MSMS	A375_MHC_IP_R2	2	598.6630859375	2	598.263673	1194.51279	-0.70043	-0.00041904	-0.21442	-0.00012828	-0.91485	-0.00054732	598.2636611138029	41.528	0.65945	42.302	41.845	42.504	0.77451					32	12	3	0	0	0	0.00047034	1	15310	15310		118.07	91.8	1	7041400			18662	1797	13415	13518	18290	18290		61			-0.07668279302220071
GTYMGHTGAVW	11	Unmodified	_GTYMGHTGAVW_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32688150-32694122:+|nuORF;ENST00000489353.5_1_1:32688042-32691823:+|nuORF	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-MSMS	A375_MHC_IP_R1	1	590.665771484375	2	590.266216	1178.51788	-0.23078	-0.00013622	-0.0078	-4.6041E-06	-0.23858	-0.00014083	590.2662550400187	56.779	0.56068	56.779	56.498	57.059	0					22	10	3	0	0	0	0.0003373	1	20334	20334		118.07	93.077	1	7470600			18663	1797	13415	13519	18291	18291					-0.0642397543961124
GTYMGHTGAVW	11	Unmodified	_GTYMGHTGAVW_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32688150-32694122:+|nuORF;ENST00000489353.5_1_1:32688042-32691823:+|nuORF	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-MSMS	A375_MHC_IP_R2	2	590.6659545898438	2	590.266216	1178.51788	-0.75364	-0.00044485	0.04769	2.815E-05	-0.70595	-0.0004167	590.2661842569441	55.995	0.6124	56.745	56.388	57	0.75014					28	11	4	0	0	0	0.00021218	1	21135	21135		129.77	101.28	1	6704600			18664	1797	13415	13519	18292	18292					-0.0642397543961124
GTYSGKAADVW	11	Unmodified	_GTYSGKAADVW_					0	0	0		nc|ENSG00000173334|Q96RU8-2|TRIB1;ENSG00000173334|ENST00000311922|TRIB1	nc|ENSG00000173334|Q96RU8-2|TRIB1	nc|ENSG00000173334|Q96RU8-2|TRIB1	MULTI-SECPEP	A375_MHC_IP_R1	1	578.1776123046875	2	577.77747	1153.54039	0.36977	0.00021364	0.33079	0.00019112	0.70055	0.00040476	577.7771998497817	44.848	1.0129	44.848	44.471	45.484	0					66	19	5	0	0	0	0.10638	1	15601	15601		68.76	0	1	23831000			18665	7789	13416	13520	18293	18293					-0.030240527703654152
GTYSGKAADVW	11	Unmodified	_GTYSGKAADVW_					0	0	0		nc|ENSG00000173334|Q96RU8-2|TRIB1;ENSG00000173334|ENST00000311922|TRIB1	nc|ENSG00000173334|Q96RU8-2|TRIB1	nc|ENSG00000173334|Q96RU8-2|TRIB1	MULTI-SECPEP	A375_MHC_IP_R2	2	578.177734375	2	577.77747	1153.54039	-0.02724	-1.5738E-05	-0.48681	-0.00028127	-0.51405	-0.00029701	577.7771692160284	44.072	1.1644	44.841	44.43	45.594	0.76909					46	22	3	0	0	0	0.08631	1	16371	16371		79.427	0	1	26296000			18666	7789	13416	13520	18294	18294					-0.030240527703654152
GTYSPEISW	9	Unmodified	_GTYSPEISW_					0	0	0		nc|ENSG00000156471|P48651-3|PTDSS1;nc|ENSG00000156471|P48651-2|PTDSS1;ENSG00000156471|ENST00000517309|PTDSS1	nc|ENSG00000156471|P48651-3|PTDSS1	nc|ENSG00000156471|P48651-3|PTDSS1	MULTI-SECPEP	A375_MHC_IP_R1	1	520.639404296875	2	520.24019	1038.46583	-0.54711	-0.00028463	0.19394	0.00010089	-0.35317	-0.00018373	520.240335655822	94.016	0.50276	94.016	93.789	94.291	0					14	9	2	0	0	0	0.53748	1	34576	34576		24.021	18.289	1	1409700			18667	6193	13417	13521	18295	18295					-0.051868155817146544
GTYSPEISW	9	Unmodified	_GTYSPEISW_					0	0	0		nc|ENSG00000156471|P48651-3|PTDSS1;nc|ENSG00000156471|P48651-2|PTDSS1;ENSG00000156471|ENST00000517309|PTDSS1	nc|ENSG00000156471|P48651-3|PTDSS1	nc|ENSG00000156471|P48651-3|PTDSS1	MULTI-SECPEP	A375_MHC_IP_R2	2	520.6400146484375	2	520.24019	1038.46583	-0.53215	-0.00027684	0.19691	0.00010244	-0.33524	-0.0001744	520.2402279600985	93.383	0.66032	94.122	93.746	94.407	0.73902					17	12	2	0	0	0	0.67483	1	35516	35516		10.074	8.4213	1	1399700			18668	6193	13417	13521	18296	18296					-0.051868155817146544
GUGGSSPG	8	Unmodified	_GUGGSSPG_					0	0	0			REV__ENSG00000131871|ENST00000526049|SELENOS	REV__ENSG00000131871|ENST00000526049|SELENOS	MULTI-MSMS	A375_MHC_IP_R1	1	668.9953002929688	1	669.174152	668.166876	-0.40416	-0.00027045	-0.41723	-0.0002792	-0.82139	-0.00054965	669.1746671782424	112.2	10.482	112.2	103.22	113.7	0					318	205	2	0	0	0	0.77861	3	37961	37961;38092;38724		0	0	0	4650400	+		18669	18624	13418	13522	18297;18298;18299	18297					-0.1804809225865256
GUGGSSPG	8	Unmodified	_GUGGSSPG_					0	0	0			REV__ENSG00000131871|ENST00000526049|SELENOS	REV__ENSG00000131871|ENST00000526049|SELENOS	MULTI-SECPEP	A375_MHC_IP_R1	1	669.7182006835938	1	669.174152	668.166876	-0.40416	-0.00027045	-0.41723	-0.0002792	-0.82139	-0.00054965	669.1746671782424	112.2	10.482	112.2	103.22	113.7	0					318	205	2	0	0	0	0.972	1	38025	38025		0	0	0	4650400	+		18670	18624	13418	13522	18300	18300					-0.1804809225865256
GUGGSSPG	8	Unmodified	_GUGGSSPG_					0	0	0			REV__ENSG00000131871|ENST00000526049|SELENOS	REV__ENSG00000131871|ENST00000526049|SELENOS	MULTI-MSMS	A375_MHC_IP_R2	2	669.0635986328125	1	669.174152	668.166876	-0.72762	-0.00048691	-0.65725	-0.00043982	-1.3849	-0.00092672	669.1746715732938	105.73	12.685	106.49	100.62	113.31	0.75977					361	248	2	0	0	0	0.77839	6	42172	38442;39312;39484;39585;41648;42172		0	0	0	3989300	+		18671	18624	13418	13522	18301;18302;18303;18304;18305;18306	18306					-0.1804809225865256
GUGGSSPG	8	Unmodified	_GUGGSSPG_					0	0	0			REV__ENSG00000131871|ENST00000526049|SELENOS	REV__ENSG00000131871|ENST00000526049|SELENOS	MULTI-MSMS	A375_MHC_IP_R2	2	668.7109375	1	669.174152	668.166876	-0.57715	-0.00038622	-0.8112	-0.00054283	-1.3884	-0.00092905	669.1744218998879	115.71	3.5086	116.4	113.24	116.75	0.68999					122	68	2	0	0	0	0.77861	1	42980	42980		0	0	0	5377100	+		18672	18624	13418	13522	18307	18307					-0.1804809225865256
GUGGSSPG	8	Unmodified	_GUGGSSPG_					0	0	0			REV__ENSG00000131871|ENST00000526049|SELENOS	REV__ENSG00000131871|ENST00000526049|SELENOS	MULTI-SECPEP	A375_MHC_IP_R2	2	669.6962890625	1	669.174152	668.166876	-0.57715	-0.00038622	-0.8112	-0.00054283	-1.3884	-0.00092905	669.1744218998879	115.71	3.5086	116.4	113.24	116.75	0.68999					122	68	2	0	0	0	0.972	1	43311	43311		0	0	0	5377100	+		18673	18624	13418	13522	18308	18308					-0.1804809225865256
GUGGSSPG	8	Unmodified	_GUGGSSPG_					0	0	0			REV__ENSG00000131871|ENST00000526049|SELENOS	REV__ENSG00000131871|ENST00000526049|SELENOS	MULTI-SECPEP	A375_MHC_IP_R2	2	668.7294311523438	1	669.174152	668.166876	-1.0376	-0.00069435	-0.62419	-0.00041769	-1.6618	-0.001112	669.1746346203751	34.127	10.198	34.879	29.488	39.686	0.75225					294	200	2	0	0	0	0.972	1	10813	10813		0	0	0	8096900	+		18674	18624	13418	13522	18309	18309					-0.1804809225865256
GUGGSSPG	8	Unmodified	_GUGGSSPG_					0	0	0			REV__ENSG00000131871|ENST00000526049|SELENOS	REV__ENSG00000131871|ENST00000526049|SELENOS	MULTI-SECPEP	A375_MHC_IP_R2	2	669.0635986328125	1	669.174152	668.166876	-0.72762	-0.00048691	-0.65725	-0.00043982	-1.3849	-0.00092672	669.1746715732938	105.73	12.685	106.49	100.62	113.31	0.75977					361	248	2	0	0	0	0.972	1	42172	42172		0	0	0	3989300	+		18675	18624	13418	13522	18310	18310					-0.1804809225865256
GVAAAGHA	8	Unmodified	_GVAAAGHA_					0	0	0		ENST00000563067.5_1_16:2258286-2258875:+|nuORF	ENST00000563067.5_1_16:2258286-2258875:+|nuORF	ENST00000563067.5_1_16:2258286-2258875:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	652.9957275390625	1	653.33655	652.329273	-0.16149	-0.00010551	-1.0271	-0.00067104	-1.1886	-0.00077655	653.3356364185362	92.795	1.0157	92.795	92.007	93.023	0					22	19	2	0	0	0	0.972	1	33831	33831		0.79363	0	1	7463400			18676	13521	13419	13523	18311	18311					-0.010798402309205812
GVAAVGSVGLG	11	Unmodified	_GVAAVGSVGLG_					0	0	0			REV__ENST00000554664.5_1_14:74485794-74485881:-|nuORF	REV__ENST00000554664.5_1_14:74485794-74485881:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	444.1532287597656	2	443.753267	885.491981	-0.76525	-0.00033958	0.2974	0.00013197	-0.46785	-0.00020761	443.7534110951745	29.852	0.45424	30.551	30.335	30.79	0.69872					13	8	2	0	0	0	0.72469	1	10480	10480		17.113	0	1	3118600	+		18677	26081	13420	13524	18312	18312					0.04465498380443478
GVADAELR	8	Unmodified	_GVADAELR_					0	0	0			REV__ENST00000416022.1_1_19:54959569-54959656:-|nuORF	REV__ENST00000416022.1_1_19:54959569-54959656:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	416.1215515136719	2	415.721967	829.429381	0.30065	0.00012499	-0.63756	-0.00026505	-0.33691	-0.00014006	415.7216453714318	100.29	0.91257	100.29	99.975	100.89	0					38	17	3	0	0	0	0.97144	1	36815	36815		9.3474	0	1	11669000	+		18678	24529	13421	13525	18313	18313					0.007843523122346596
GVAEESLQTV	10	Unmodified	_GVAEESLQTV_					0	0	0		nc|ENSG00000054267|Q4LE39-2|ARID4B;ENSG00000054267|ENST00000264183|ARID4B;ENST00000491632.5_1_1:235341091-235490234:-|nuORF;nc|ENSG00000054267|Q4LE39-3|ARID4B;nc|ENSG00000054267|Q4LE39-4|ARID4B	nc|ENSG00000054267|Q4LE39-2|ARID4B	nc|ENSG00000054267|Q4LE39-2|ARID4B	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1636352539062	2	516.764029	1031.5135	-1.1101	-0.00057367	0.4554	0.00023533	-0.65472	-0.00033834	516.7639185169519	59.996	0.45526	60.743	60.45	60.906	0.74714					14	8	2	0	0	0	0.19943	1	22679	22679		60.074	0.70553	1	2979900			18679	1257	13422	13526	18314	18314					-0.0009916138151311316
GVAESIHLW	9	Unmodified	_GVAESIHLW_					0	0	0		ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	MULTI-SECPEP	A375_MHC_IP_R2	2	506.66607666015625	2	506.266542	1010.51853	-0.66496	-0.00033665	-0.97437	-0.00049329	-1.6393	-0.00082994	506.26626250521167	88.481	0.91191	89.213	88.621	89.533	0.7318					32	17	3	0	0	0	0.28418	1	33694	33694		38.151	11.81	1	2114500			18680	1373	13423	13527	18315	18315					0.01369187271757255
GVAESIHLWEV	11	Unmodified	_GVAESIHLWEV_					0	0	0		ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	MULTI-SECPEP	A375_MHC_IP_R2	2	621.116943359375	2	620.322045	1238.62954	-0.70837	-0.00043942	-1.3025	-0.00080798	-2.0109	-0.0012474	620.3209820809159	102.59	0.76307	103.35	103.02	103.79	0.76428					21	14	3	0	0	0	0.95991	1	38831	38831		13.042	2.2185	1	1865200			18681	1373	13424	13528	18316	18316					0.01976782189194637
GVAGGARVC	9	Unmodified	_GVAGGARVC_					0	0	0			REV__ENST00000457894.4_1_X:38664863-38664923:+|nuORF	REV__ENST00000457894.4_1_X:38664863-38664923:+|nuORF	MSMS	A375_MHC_IP_R2	2	394.95599365234375	2	395.20543	788.396307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.369	1	23.999	23.499	24.499	0.63014								0	0	0	0.15486	1	7505	7505		11.64	0.81637	1		+		18682	24945	13425	13529	18317	18317					-0.0063555301146607235
GVAGHRKA	8	Unmodified	_GVAGHRKA_					0	0	0		ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	MULTI-MSMS	A375_MHC_IP_R2	2	398.6327819824219	2	398.232836	794.45112	-0.14957	-5.9565E-05	-0.040021	-1.5938E-05	-0.1896	-7.5503E-05	398.23275000944625	106.87	1.7317	107.63	107.29	109.02	0.75977					47	33	2	0	0	0	0.77781	1	40634	40634		2.8892	2.0956	1	2230700			18683	4255	13426	13530	18318	18318					0.04567201851455138
GVAGHRKA	8	Unmodified	_GVAGHRKA_					0	0	0		ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	398.232836	794.45112	0.071998	2.8672E-05	0.44763	0.00017826	0.51962	0.00020693	398.2328922906916	107.42	2.136	107.42	106.93	109.07	0	-0.10522	0.00018711	NaN	2.8892	61	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2844000			18684	4255	13426	13530							0.04567201851455138
GVAGLPAL	8	Unmodified	_GVAGLPAL_					0	0	0		ENSG00000197565|ENST00000334504|COL4A6;nc|ENSG00000197565|Q14031|COL4A6	ENSG00000197565|ENST00000334504|COL4A6	ENSG00000197565|ENST00000334504|COL4A6	MULTI-SECPEP	A375_MHC_IP_R2	2	696.7684936523438	1	697.424302	696.417025	-0.78285	-0.00054598	0.3067	0.0002139	-0.47615	-0.00033208	697.4245709227441	80.882	0.46224	81.627	81.365	81.828	0.74474					11	8	2	0	0	0	0.72845	1	30752	30752		32.454	8.2437	1	1719900			18685	9171	13427	13531	18319	18319					0.056673606398476295
GVAICKAG	8	Unmodified	_GVAICKAG_					0	0	0			REV__ENST00000465164.1_1_10:88820432-88820782:-|nuORF	REV__ENST00000465164.1_1_10:88820432-88820782:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	359.42828369140625	2	359.699449	717.384345	0.19667	7.0741E-05	-3.041	-0.0010938	-2.8443	-0.0010231	359.69785598381196	51.079	0.71012	51.079	50.864	51.575	0					20	13	2	0	0	0	0.972	1	18298	18298		6.3541	3.4649	1	973880	+		18686	19641	13428	13532	18320	18320					0.014348302453413453
GVAKLGAF	8	Unmodified	_GVAKLGAF_					0	0	0			REV__nc|ENSG00000117308|Q14376-2|GALE	REV__nc|ENSG00000117308|Q14376-2|GALE	MULTI-SECPEP	A375_MHC_IP_R1	1	382.1291198730469	2	381.729064	761.443575	0.54668	0.00020868	0.085486	3.2632E-05	0.63216	0.00024132	381.7290137549344	45.646	0.65881	45.646	45.384	46.043	0					21	12	3	0	0	0	0.82569	1	15964	15964		36.466	21.884	1	5070400	+		18687	18002	13429	13533	18321	18321					0.05331049531184817
GVALCWGLSF	10	Unmodified	_GVALCWGLSF_					0	0	0			REV__ENST00000486102.5_1_3:49728598-49742525:+|nuORF	REV__ENST00000486102.5_1_3:49728598-49742525:+|nuORF	MSMS	A375_MHC_IP_R2	2	526.674072265625	2	526.76532	1051.51609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.278	1	44.051	43.551	44.551	0.7724								0	0	0	0.02734	1	16121	16121		67.344	18.998	1		+		18688	25318	13430	13534	18322	18322					-0.007609844575654279
GVAMLKRS	8	Unmodified	_GVAMLKRS_					0	0	0			REV__ENSG00000120451|ENST00000265909|SNX19	REV__ENSG00000120451|ENST00000265909|SNX19	MSMS	A375_MHC_IP_R1	1	431.2883605957031	2	431.25238	860.490207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.074	1	70.074	69.574	70.574	0								0	0	0	0.16876	1	25437	25437		6.3541	0	1		+		18689	18123	13431	13535	18323	18323					0.05438166090823415
GVAPRAAPP	9	Unmodified	_GVAPRAAPP_					0	0	0			REV__ENST00000531866.1_1_11:46722979-46723237:+|nuORF	REV__ENST00000531866.1_1_11:46722979-46723237:+|nuORF	MSMS	A375_MHC_IP_R1	1	418.265869140625	2	418.24287	834.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.358	1	60.358	59.858	60.858	0								0	0	0	0.15486	1	21729	21729		9.3474	0.75416	1		+		18690	23511	13432	13536	18324	18324					0.04732952791414391
GVAPRAAPP	9	Unmodified	_GVAPRAAPP_					0	0	0			REV__ENST00000531866.1_1_11:46722979-46723237:+|nuORF	REV__ENST00000531866.1_1_11:46722979-46723237:+|nuORF	MSMS	A375_MHC_IP_R2	2	418.26544189453125	2	418.24287	834.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.592	1	60.339	59.839	60.839	0.74714								0	0	0	0.15486	1	22552	22552		9.3474	3.587	1		+		18691	23511	13432	13536	18325	18325					0.04732952791414391
GVAPRLLRIK	10	Unmodified	_GVAPRLLRIK_					0	0	0			REV__NTNG1|p.R263K|1|0.56|ENSG00000162631|chr1:107324823-107324823|G/A|missense_variant	REV__NTNG1|p.R263K|1|0.56|ENSG00000162631|chr1:107324823-107324823|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	1123.03466796875	1	1122.74697	1121.7397	0.27732	0.00031136	-0.39186	-0.00043997	-0.11454	-0.0001286	1122.748650558413	116.47	2.3351	117.13	116.06	118.39	0.65962					130	45	5	0	0	0	0.93799	1	43785	43785		1.4819	0	1	707190000	+		18692	27632	13433	13537	18326	18326					0.1836967203887525
GVAPVVGF	8	Unmodified	_GVAPVVGF_					0	0	0			REV__ENST00000337120.9_2_16:28875790-28875847:+|nuORF	REV__ENST00000337120.9_2_16:28875790-28875847:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	745.5921630859375	1	745.424302	744.417025	-0.42703	-0.00031832	0.073086	5.448E-05	-0.35395	-0.00026384	745.4243095242147	97.145	0.45512	97.145	96.934	97.389	0					11	8	2	0	0	0	0.95327	1	35693	35693		17.087	5.9721	1	1581100	+		18693	23687	13434	13538	18327	18327					0.03459360639863007
GVAQHIQEA	9	Unmodified	_GVAQHIQEA_					0	0	0		ENST00000006053.6_2_16:57418537-57418765:+|nuORF	ENST00000006053.6_2_16:57418537-57418765:+|nuORF	ENST00000006053.6_2_16:57418537-57418765:+|nuORF	MSMS	A375_MHC_IP_R2	2	476.598388671875	2	476.745973	951.477394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.028	1	24.669	24.169	25.169	0.64165								0	0	0	0.1535	1	7827	7827		15.847	0	1				18694	10059	13435	13539	18328	18328					-0.000285737677245379
GVARGPTPYW	10	Unmodified	_GVARGPTPYW_					0	0	0		ENSG00000183255|ENST00000330938|PTTG1IP;ENST00000480234.1_1_21:46285323-46293531:-|nuORF	ENSG00000183255|ENST00000330938|PTTG1IP	ENSG00000183255|ENST00000330938|PTTG1IP	MSMS	A375_MHC_IP_R2	2	368.24163818359375	3	368.525936	1102.55598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.804	1	33.541	33.041	34.041	0.73692								0	0	0	0.15308	1	11708	11708		9.544	3.7605	1				18695	8478	13436	13540	18329	18329					0.008802785373518418
GVARLPLL	8	Unmodified	_GVARLPLL_					0	0	0		nc|ENSG00000168487|P13497-4|BMP1;nc|ENSG00000168487|P13497-5|BMP1;nc|ENSG00000168487|P13497-2|BMP1;nc|ENSG00000168487|P13497-6|BMP1;ENSG00000168487|ENST00000306385|BMP1;nc|ENSG00000168487|P13497-3|BMP1	nc|ENSG00000168487|P13497-4|BMP1	nc|ENSG00000168487|P13497-4|BMP1	MULTI-SECPEP	A375_MHC_IP_R2	2	420.1790771484375	2	419.779088	837.543623	-0.077998	-3.2742E-05	0.20615	8.6537E-05	0.12815	5.3795E-05	419.77903471506147	102.78	0.61005	103.54	103.28	103.89	0.76429					16	11	2	0	0	0	0.92636	1	38937	38937		16.942	0	1	1933000			18696	7309	13437	13541	18330	18330					0.11835286864993577
GVARRTSH	8	Unmodified	_GVARRTSH_					0	0	0			REV__nc|ENSG00000168014|Q4AC94-4|C2CD3	REV__nc|ENSG00000168014|Q4AC94-4|C2CD3	MULTI-MSMS	A375_MHC_IP_R2	2	442.1557922363281	2	442.246475	882.478397	-0.60137	-0.00026595	-1.0363	-0.0004583	-1.6377	-0.00072426	442.2460853450522	23.866	0.25577	24.496	24.384	24.64	0.63015					5	4	2	0	0	0	0.77686	1	7757	7757		6.3541	0.59368	1	747870	+		18697	27343	13438	13542	18331	18331					0.03245685391846109
GVASRGARW	9	Unmodified	_GVASRGARW_					0	0	0		ENST00000427624.2_1_19:58880265-58880316:-|nuORF	ENST00000427624.2_1_19:58880265-58880316:-|nuORF	ENST00000427624.2_1_19:58880265-58880316:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	480.1998291015625	2	480.262125	958.509697	-0.26978	-0.00012957	-2.6619	-0.0012784	-2.9316	-0.001408	480.2604724722659	43.425	0.71181	43.425	42.891	43.603	0					20	13	2	0	0	0	0.46038	1	14962	14962		21.747	1.293	1	3748400			18698	11825	13439	13543	18332	18332					0.028782584259374744
GVASVPRK	8	Unmodified	_GVASVPRK_					0	0	0			REV__ENSG00000101350|ENST00000375712|KIF3B	REV__ENSG00000101350|ENST00000375712|KIF3B	MULTI-SECPEP	A375_MHC_IP_R1	1	813.9651489257812	1	813.494113	812.486836	-0.10981	-8.9327E-05	1.0635	0.00086513	0.95367	0.00077581	813.4972244409169	116.66	0.25479	116.66	116.5	116.75	0					6	4	2	0	0	0	0.972	1	42765	42765		2.5775	0.27475	1	4058600	+		18699	17164	13440	13544	18333	18333					0.07309239308460747
GVAVAYKAGEW	11	Unmodified	_GVAVAYKAGEW_					0	0	0			REV__ENSG00000139514|ENST00000380752|SLC7A1	REV__ENSG00000139514|ENST00000380752|SLC7A1	MULTI-SECPEP	A375_MHC_IP_R1	1	383.6092224121094	3	384.201229	1149.58186	0.4818	0.00018511	0.31236	0.00012001	0.79415	0.00030511	384.20122314191207	39.234	0.35726	39.234	38.983	39.34	0					11	6	2	0	0	0	0.98416	1	13277	13277		7.9454	0	1	3120600	+		18700	19159	13441	13545	18334	18334					0.013051279890078149
GVAVFLSFII	10	Unmodified	_GVAVFLSFII_					0	0	0		tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	533.16845703125	2	533.320786	1064.62702	-0.68959	-0.00036777	3.6866	0.0019661	2.997	0.0015984	533.3221012523916	126.39	1.1135	126.69	125.87	126.99	0.2951					26	21	2	0	0	0	0.92051	1	49557	49557		7.9102	0	1	6123400			18701	29446	13442	13546	18335	18335					0.09728978522161924
GVAVLNRLLY	10	Unmodified	_GVAVLNRLLY_					0	0	0		ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	MSMS	A375_MHC_IP_R2	2	559.3543090820312	2	559.340041	1116.66553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.077	1	81.822	81.322	82.322	0.74474								0	0	0	0.15283	1	30787	30787		11.64	2.2572	1				18702	1706	13443	13547	18336	18336					0.11186284156724469
GVAVMKIR	8	Unmodified	_GVAVMKIR_					0	0	0			REV__ADH1B|p.V37A|1|0.19|ENSG00000196616|chr4:99318795-99318795|A/G|missense_variant	REV__ADH1B|p.V37A|1|0.19|ENSG00000196616|chr4:99318795-99318795|A/G|missense_variant	MSMS	A375_MHC_IP_R2	2	437.1689453125	2	437.270573	872.526593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.35	1	102.12	101.62	102.62	0.76428								0	0	0	0.16876	1	38416	38416		2.8892	0	1		+		18703	15336	13444	13548	18337	18337					0.08523042987530971
GVAVRANQNL	10	Unmodified	_GVAVRANQNL_					0	0	0		nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-3|RYR3;RYR3|p.D3926Vfs*56|1|0.44|ENSG00000198838|chr15:33837756-33837757|-/TT|frameshift_variant;RYR3|p.I2442Ffs*32|1|0.31|ENSG00000198838|chr15:33731593-33731594|-/TTTTTTGAACTAAAACTCTC|frameshift_variant	nc|ENSG00000198838|Q15413-2|RYR3	nc|ENSG00000198838|Q15413-2|RYR3	MULTI-MSMS	A375_MHC_IP_R1	1	521.2573852539062	2	521.293622	1040.57269	-0.32953	-0.00017178	-0.55697	-0.00029034	-0.8865	-0.00046213	521.2935714674413	110.13	2.0912	110.13	109.32	111.41	0					53	40	2	0	0	0	0.70329	1	40586	40586		10.824	10.824	1	1493000			18704	9343	13445	13549	18338	18338					0.054027794233206805
GVAVRGKR	8	Unmodified	_GVAVRGKR_					0	0	0			REV__ENSG00000151640|ENST00000338492|DPYSL4	REV__ENSG00000151640|ENST00000338492|DPYSL4	MULTI-SECPEP	A375_MHC_IP_R2	2	422.16961669921875	2	421.769586	841.524619	-0.060933	-2.57E-05	-0.02712	-1.1438E-05	-0.088052	-3.7138E-05	421.7694913094337	132.7	1.4745	132.87	132.59	134.06	0.16487					67	28	4	0	0	0	0.972	1	52406	52406		0.79363	0.79363	1	97071000	+		18705	19763	13446	13550	18339	18339					0.09751750293935402
GVAVRGKR	8	Unmodified	_GVAVRGKR_					0	0	0			REV__ENSG00000151640|ENST00000338492|DPYSL4	REV__ENSG00000151640|ENST00000338492|DPYSL4	MULTI-MATCH	A375_MHC_IP_R1	1		2	421.769586	841.524619	-0.2413	-0.00010177	0.2356	9.937E-05	-0.0057011	-2.4046E-06	421.7695896946926	132.82	1.4786	132.82	132.64	134.12	0	-0.023445	0.00011931	NaN	0.79363	66	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104860000	+		18706	19763	13446	13550							0.09751750293935402
GVAVWGMG	8	Unmodified	_GVAVWGMG_					0	0	0		ENST00000501122.2_1_11:65192222-65192513:+|nuORF	ENST00000501122.2_1_11:65192222-65192513:+|nuORF	ENST00000501122.2_1_11:65192222-65192513:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	776.5604248046875	1	776.375972	775.368695	-0.76298	-0.00059236	-2.5692	-0.0019947	-3.3322	-0.002587	776.3734821668801	138.21	0.25229	138.29	138.17	138.42	0.083969					6	4	2	0	0	0	0.77781	1	54239	54239		2.8892	0	1	931260			18707	12781	13447	13551	18340	18340					-0.02797456271696319
GVAWIASLYK	10	Unmodified	_GVAWIASLYK_					0	0	0			REV__CPNE2|p.E337K|1|0.27|ENSG00000140848|chr16:57125941-57125941|G/A|missense_variant	REV__CPNE2|p.E337K|1|0.27|ENSG00000140848|chr16:57125941-57125941|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	369.61199951171875	3	369.878087	1106.61243	0.25427	9.4049E-05	1.6632	0.00061517	1.9174	0.00070922	370.2135073839463	89.732	0.2016	89.732	89.628	89.83	0					5	3	2	0	0	0	0.94819	1	32954	32954		0.15932	0	1	303780	+		18708	15909	13448	13552	18341	18341					0.0633890637402601
GVAYLGGA	8	Unmodified	_GVAYLGGA_					0	0	0			REV__WDR47|p.H615Y|1|0.55|ENSG00000085433|chr1:108986605-108986605|G/A|missense_variant	REV__WDR47|p.H615Y|1|0.55|ENSG00000085433|chr1:108986605-108986605|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	707.6351928710938	1	707.372266	706.36499	-0.36099	-0.00025536	-0.90442	-0.00063976	-1.2654	-0.00089512	707.3758123046534	126.22	0.20157	126.22	126.1	126.3	0					5	3	2	0	0	0	0.95327	1	48172	48172		11.114	0	1	3605500	+		18709	16836	13449	13553	18342	18342					6.1972260937182E-05
GVAYQALTEA	10	Unmodified	_GVAYQALTEA_					0	0	0		ENSG00000163295|ENST00000295463|ALPI	ENSG00000163295|ENST00000295463|ALPI	ENSG00000163295|ENST00000295463|ALPI	MULTI-MSMS	A375_MHC_IP_R1	1	512.2213134765625	2	511.761289	1021.50803	-0.48975	-0.00025063	0.82763	0.00042355	0.33788	0.00017292	511.7610936086397	77.463	0.8636	77.463	76.878	77.742	0					41	16	3	0	0	0	0.36703	1	28212	28212		36.127	3.8215	1	3317700			18710	6644	13450	13554	18343	18343					-0.001868401733418068
GVCTQQKLIY	10	Unmodified	_GVCTQQKLIY_					0	0	0		TEC|p.P437L|1|0.4|ENSG00000135605|chr4:48145239-48145239|G/A|missense_variant	TEC|p.P437L|1|0.4|ENSG00000135605|chr4:48145239-48145239|G/A|missense_variant	TEC|p.P437L|1|0.4|ENSG00000135605|chr4:48145239-48145239|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	576.8575439453125	2	576.807716	1151.60088	-0.14015	-8.0842E-05	0.67904	0.00039168	0.53889	0.00031083	576.808345073803	73.149	0.9168	73.885	73.48	74.396	0.7354					21	17	2	0	0	0	0.71245	1	27827	27827		6.7232	0.96273	1	1565100			18711	29317	13451	13555	18344	18344					0.031143412884148347
GVCVPCCSGEP	11	Unmodified	_GVCVPCCSGEP_					0	0	0			REV__ENSG00000138759|ENST00000512123|FRAS1	REV__ENSG00000138759|ENST00000512123|FRAS1	MSMS	A375_MHC_IP_R2	2	525.7078247070312	2	525.706288	1049.39802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.88	1	67.617	67.117	68.117	0.73631								0	0	0	0.16179	1	25337	25337		9.3831	2.66	1		+		18712	19118	13452	13556	18345	18345					-0.1247004810004455
GVDCCCDP	8	Unmodified	_GVDCCCDP_					0	0	0		ENSG00000090889|ENST00000374403|KIF4A	ENSG00000090889|ENST00000374403|KIF4A	ENSG00000090889|ENST00000374403|KIF4A	MSMS	A375_MHC_IP_R2	2	406.1394958496094	2	406.124599	810.234646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.239	1	72.974	72.474	73.474	0.73421								0	0	0	0.16876	1	27413	27413		0.6015	0.6015	1				18713	1962	13453	13557	18346	18346					-0.17806226151083138
GVDDNGNI	8	Unmodified	_GVDDNGNI_					0	0	0		tr|U7SI07|U7SI07_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02184PE=4SV=1	tr|U7SI07|U7SI07_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02184PE=4SV=1	tr|U7SI07|U7SI07_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02184PE=4SV=1	MSMS	A375_MHC_IP_R2	2	401.9762878417969	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.029	1	61.774	61.274	62.274	0.74503								0	0	0	0.16876	1	23123	23123		6.3541	0	1				18714	29427	13454	13558	18347	18347					-0.06336803855458584
GVDDVTFL	8	Unmodified	_GVDDVTFL_					0	0	0		ENST00000517503.1_3_8:144103316-144103727:+|nuORF	ENST00000517503.1_3_8:144103316-144103727:+|nuORF	ENST00000517503.1_3_8:144103316-144103727:+|nuORF	MSMS	A375_MHC_IP_R1	1	433.2852478027344	2	433.218726	864.422899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.85	1	112.85	112.35	113.35	0								0	0	0	0.16876	1	41362	41362		6.3541	0	1				18715	12959	13455	13559	18348	18348					-0.014735856391439484
GVDFLERQI	9	Unmodified	_GVDFLERQI_					0	0	0		ENSG00000112210|ENST00000468148|RAB23	ENSG00000112210|ENST00000468148|RAB23	ENSG00000112210|ENST00000468148|RAB23	MULTI-SECPEP	A375_MHC_IP_R2	2	358.9485168457031	3	359.529346	1075.56621	-0.26319	-9.4624E-05	-0.23453	-8.432E-05	-0.49772	-0.00017894	359.5292549509873	32.772	0.40582	33.509	33.265	33.671	0.73691					20	7	4	0	0	0	0.47368	1	11739	11739		19.362	4.1135	1	8049600			18716	3060	13456	13560	18349	18349					0.031448414719761786
GVDGLVVAVVH	11	Unmodified	_GVDGLVVAVVH_					0	0	0			REV__ENST00000592793.5_1_16:5121850-5123284:+|nuORF	REV__ENST00000592793.5_1_16:5121850-5123284:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	355.4600830078125	3	355.541475	1063.60259	0.28152	0.00010009	-0.35928	-0.00012774	-0.077758	-2.7646E-05	355.54127147546876	44.344	0.46034	44.344	44.216	44.676	0					14	8	2	0	0	0	0.73781	1	15594	15594		1.4551	0.12547	1	2951600	+		18717	16304	13457	13561	18350	18350					0.07333718368658992
GVDGNVRLY	9	Unmodified	_GVDGNVRLY_					0	0	0		ENST00000515743.5_1_4:10078742-10093271:-|nuORF;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1;ENSG00000071127|ENST00000499869|WDR1	ENST00000515743.5_1_4:10078742-10093271:-|nuORF	ENST00000515743.5_1_4:10078742-10093271:-|nuORF	MSMS	A375_MHC_IP_R2	2	496.677490234375	2	496.761623	991.508694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.046	1	47.807	47.307	48.307	0.76128								0	0	0	0.15069	1	17631	17631		20.454	5.6154	1				18718	1509	13458	13562	18351	18351					0.012599992663808735
GVDKLFSYAI	10	Unmodified	_GVDKLFSYAI_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B;ENST00000261834.9_1_14:96756535-96777546:-|nuORF	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-SECPEP	A375_MHC_IP_R1	1	371.937744140625	3	371.53773	1111.59136	0.35094	0.00013039	-0.36048	-0.00013393	-0.009538	-3.5437E-06	371.53766782529067	59.625	0.50742	59.625	59.295	59.803	0					12	9	2	0	0	0	0.94891	1	21478	21478		0.13989	0.13989	1	1565000			18719	1419	13459	13563	18352	18352					0.040028962745282115
GVDKLFSYAI	10	Unmodified	_GVDKLFSYAI_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B;ENST00000261834.9_1_14:96756535-96777546:-|nuORF	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-MATCH	A375_MHC_IP_R2	2		3	371.53773	1111.59136	0.071824	2.6685E-05	-0.35092	-0.00013038	-0.27909	-0.00010369	371.5376553363817	58.813	0.5071	59.56	59.235	59.742	0.74714	-0.032103	7.3415E-06	NaN	0.13989	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	810350			18720	1419	13459	13563							0.040028962745282115
GVDLTGPQLY	10	Unmodified	_GVDLTGPQLY_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10;chr16:67935478-67935630|123|42.85|0.0|22.03|-|2|PSMB10,None|1	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	A375_MHC_IP_R1	1	531.7776489257812	2	531.776939	1061.53933	-0.59117	-0.00031437	0.15257	8.1133E-05	-0.4386	-0.00023324	531.776992315209	93.799	0.60667	93.799	93.484	94.09	0					30	11	4	0	0	0	0.011669	1	34482	34482		114.2	60.369	1	5130800			18721	9501	13460	13564	18353	18353					0.011017328607749732
GVDLTGPQLY	10	Unmodified	_GVDLTGPQLY_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10;chr16:67935478-67935630|123|42.85|0.0|22.03|-|2|PSMB10,None|1	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-SECPEP	A375_MHC_IP_R2	2	532.1763916015625	2	531.776939	1061.53933	-0.58106	-0.000309	0.40098	0.00021323	-0.18009	-9.5765E-05	531.7770517254705	93.126	0.96366	93.865	93.546	94.509	0.73901					38	18	4	0	0	0	0.028212	1	35376	35376		103.42	63.47	1	6600700			18722	9501	13460	13564	18354	18354					0.011017328607749732
GVDPDKELSY	10	Unmodified	_GVDPDKELSY_					0	0	0		ENSG00000129315|ENST00000261900|CCNT1;nc|ENSG00000129315|O60563-2|CCNT1	ENSG00000129315|ENST00000261900|CCNT1	ENSG00000129315|ENST00000261900|CCNT1	MULTI-SECPEP	A375_MHC_IP_R1	1	561.7145385742188	2	561.769311	1121.52407	-0.18394	-0.00010333	-1.4549	-0.0008173	-1.6388	-0.00092063	561.7680006386798	45.484	0.60552	45.484	45.183	45.789	0					23	11	3	0	0	0	0.83447	1	15961	15961		23.79	14.407	1	2465600			18723	4186	13461	13565	18355	18355					-0.03183178727090308
GVDQDFPNTAF	11	Unmodified	_GVDQDFPNTAF_					0	0	0			REV__ENST00000377500.1_1_10:17686338-17730033:+|nuORF	REV__ENST00000377500.1_1_10:17686338-17730033:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	605.156005859375	2	605.772385	1209.53022	0.028491	1.7259E-05	-0.94613	-0.00057314	-0.91764	-0.00055588	605.7717833909968	38.832	0.25352	38.832	38.679	38.933	0					7	4	2	0	0	0	0.99018	1	13240	13240		7.609	4.6137	1	2476100	+		18724	24160	13462	13566	18356	18356					-0.06616660495569704
GVDQRARRG	9	Unmodified	_GVDQRARRG_					0	0	0			REV__ENST00000374316.9_1_6:33588911-33589319:+|nuORF	REV__ENST00000374316.9_1_6:33588911-33589319:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	507.7264709472656	2	507.781213	1013.54787	-0.64694	-0.0003285	0.92953	0.000472	0.28259	0.00014349	507.781955980367	44.161	0.35521	44.93	44.782	45.138	0.7691					9	6	2	0	0	0	0.58047	1	16468	16468		15.847	3.6065	1	633210	+		18725	24105	13463	13567	18357	18357					0.041641443406206236
GVDVTGPHLY	10	Unmodified	_GVDVTGPHLY_					0	0	0		ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	MULTI-MSMS	A375_MHC_IP_R1	1	529.6682739257812	2	529.269281	1056.52401	-0.53302	-0.00028211	-0.24594	-0.00013017	-0.77896	-0.00041228	529.2691651062594	59.572	1.6779	59.572	58.786	60.464	0					113	32	7	0	0	0	0.0016777	3	21363	21363;21450;21589		141.83	97.968	1	222400000			18726	4841	13464	13568	18358;18359;18360	18358					-0.0019913393641672883
GVDVTGPHLY	10	Unmodified	_GVDVTGPHLY_					0	0	0		ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	MULTI-MSMS	A375_MHC_IP_R2	2	529.6687622070312	2	529.269281	1056.52401	-0.93288	-0.00049375	-0.27009	-0.00014295	-1.203	-0.00063669	529.2691325052303	58.846	1.215	59.594	59.185	60.4	0.74714					69	23	4	0	0	0	0.011733	2	22178	22178;22395		112.59	72.643	1	219000000			18727	4841	13464	13568	18361;18362	18361					-0.0019913393641672883
GVDVTLPRV	9	Unmodified	_GVDVTLPRV_					0	0	0		AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.P2986Afs*6|1|0.42|ENSG00000124942|chr11:62525462-62525463|-/A|frameshift_variant;AHNAK|p.F4329Lfs*50|1|0.43|ENSG00000124942|chr11:62521430-62521430|G/-|frameshift_variant;AHNAK|p.M4461Afs*2|1|0.03|ENSG00000124942|chr11:62521035-62521036|AT/-|frameshift_variant	AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	478.68231201171875	2	478.282192	954.549831	-0.35156	-0.00016814	-0.1495	-7.1504E-05	-0.50106	-0.00023965	478.28216166868975	72.633	0.60848	72.633	72.321	72.93	0					18	11	2	0	0	0	0.67539	1	26465	26465		21.537	19.477	1	1643700			18728	87	13465	13569	18363	18363					0.07073760305854648
GVDWFYFTV	9	Unmodified	_GVDWFYFTV_					0	0	0			REV__ARL4A|p.H72Y|1|0.25|ENSG00000122644|chr7:12688468-12688468|C/T|missense_variant	REV__ARL4A|p.H72Y|1|0.25|ENSG00000122644|chr7:12688468-12688468|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	378.958251953125	3	378.514925	1132.52295	0.70659	0.00026746	-1.6992	-0.00064317	-0.99261	-0.00037572	378.51409568116765	22.342	0.15219	22.342	22.216	22.368	0					4	2	2	0	0	0	0.80101	1	5979	5979		2.7352	0	1	404650	+		18729	15450	13466	13570	18364	18364					-0.038013483053418895
GVDWLRITLP	10	Unmodified	_GVDWLRITLP_					0	0	0			REV__ENSG00000182752|ENST00000328252|PAPPA	REV__ENSG00000182752|ENST00000328252|PAPPA	MULTI-SECPEP	A375_MHC_IP_R1	1	390.25244140625	3	390.560758	1168.66044	0.012473	4.8715E-06	-2.9503	-0.0011523	-2.9378	-0.0011474	390.55945804241463	19.349	0.43628	19.349	19.238	19.674	0					10	8	2	0	0	0	0.94163	1	4901	4901		6.1918	0.40842	1	2179400	+		18730	21706	13467	13571	18365	18365					0.08285980294067485
GVECRFSF	8	Unmodified	_GVECRFSF_					0	0	0			REV__ENST00000503689.1_1_4:75248329-75250522:+|nuORF	REV__ENST00000503689.1_1_4:75248329-75250522:+|nuORF	MSMS	A375_MHC_IP_R1	1	472.6900939941406	2	472.71837	943.422187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.451	1	92.451	91.951	92.951	0								0	0	0	0.16876	1	33976	33976		19.439	5.9311	1		+		18731	25521	13468	13572	18366	18366					-0.05178703559840869
GVEEKEGWQ	9	Unmodified	_GVEEKEGWQ_					0	0	0			REV__ENST00000335007.9_1_12:111180569-111180701:-|nuORF	REV__ENST00000335007.9_1_12:111180569-111180701:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	531.6661376953125	2	531.248546	1060.48254	-0.69861	-0.00037113	0.54869	0.00029149	-0.14991	-7.9641E-05	531.2487943011137	74.603	0.76291	75.34	74.958	75.721	0.73752					20	14	2	0	0	0	0.4867	1	28336	28336		20.454	1.1966	1	941050	+		18732	23665	13469	13573	18367	18367					-0.045283146957672216
GVEELGQLPPV	11	Unmodified	_GVEELGQLPPV_					0	0	0		ENST00000512000.1_1_5:176794318-176794990:+|nuORF;nc|ENSG00000169220|O43566-4|RGS14;ENST00000514713.5_1_5:176793951-176795930:+|nuORF;ENST00000425155.6_1_5:176794318-176794990:+|nuORF;nc|ENSG00000169220|O43566-5|RGS14;ENSG00000169220|ENST00000408923|RGS14	ENST00000512000.1_1_5:176794318-176794990:+|nuORF	ENST00000512000.1_1_5:176794318-176794990:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	380.92034912109375	3	379.876523	1136.60774	0.019671	7.4726E-06	0.0319	1.2118E-05	0.051571	1.9591E-05	379.87653267237243	32.198	1.5771	32.935	32.654	34.232	0.73692					75	30	5	0	0	0	0.72851	1	11543	11543		10.315	2.3698	1	365850000			18733	7391	13470	13574	18368	18368					0.044899774406076176
GVEKPTFSI	9	Unmodified	_GVEKPTFSI_					0	0	0			REV__nc|ENSG00000128591|Q14315-2|FLNC	REV__nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	A375_MHC_IP_R2	2	489.6681823730469	2	489.26875	976.522947	-0.65977	-0.00032281	-1.2124	-0.00059318	-1.8722	-0.00091599	489.2685583446743	81.179	0.81297	81.924	81.468	82.281	0.74474					21	15	2	0	0	0	0.22528	1	30806	30806		36.127	0.082828	1	1851100	+		18734	18456	13471	13575	18369	18369					0.033746516946507654
GVERYKKRLR	10	Unmodified	_GVERYKKRLR_					0	0	0			REV__ENSG00000164603|ENST00000297145|BMT2	REV__ENSG00000164603|ENST00000297145|BMT2	MSMS	A375_MHC_IP_R2	2	652.9690551757812	2	652.89912	1303.78369	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.19	1	63.932	63.432	64.432	0.74263								0	0	0	0.15628	1	23955	23955		0.45834	0.10771	1		+		18735	20501	13472	13576	18370	18370					0.14394656465219668
GVEWETGRVK	10	Unmodified	_GVEWETGRVK_					0	0	0			REV__ENST00000599324.1_1_19:15235627-15235870:-|nuORF	REV__ENST00000599324.1_1_19:15235627-15235870:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	387.6550598144531	3	387.540134	1159.59857	-0.36915	-0.00014306	-0.32801	-0.00012712	-0.69715	-0.00027017	387.5400551768406	33.181	0.25473	33.933	33.84	34.095	0.75225					7	4	2	0	0	0	0.93041	1	11853	11853		7.9454	7.9454	1	932800	+		18736	26492	13473	13577	18371	18371					0.025156288749258238
GVEYNEDEY	9	Unmodified	_GVEYNEDEY_					0	0	0			REV__ENSG00000125352|ENST00000371442|RNF113A	REV__ENSG00000125352|ENST00000371442|RNF113A	MULTI-MSMS	A375_MHC_IP_R1	1	559.7154541015625	2	559.219651	1116.42475	-0.46235	-0.00025855	-1.5135	-0.00084639	-1.9759	-0.0011049	559.7214421950777	89.357	0.50822	89.357	89.12	89.628	0					10	9	2	0	0	0	0.64808	1	32761	32761		11.64	4.3511	1	758540	+		18737	18335	13474	13578	18372	18372					-0.12880621411841275
GVEYPGDE	8	Unmodified	_GVEYPGDE_					0	0	0			REV__ENSG00000091409|ENST00000684293|ITGA6	REV__ENSG00000091409|ENST00000684293|ITGA6	MSMS	A375_MHC_IP_R1	1	433.2853088378906	2	433.18234	864.350128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.98	1	114.98	114.48	115.48	0								0	0	0	0.16876	1	42165	42165		2.5775	1.0956	1		+		18738	16948	13475	13579	18373	18373					-0.08747339432557055
GVFAVEKETG	10	Unmodified	_GVFAVEKETG_					0	0	0		nc|ENSG00000062038|P22223-2|CDH3;ENST00000542274.5_1_16:68679206-68732300:+|nuORF;ENSG00000062038|ENST00000264012|CDH3	nc|ENSG00000062038|P22223-2|CDH3	nc|ENSG00000062038|P22223-2|CDH3	MSMS	A375_MHC_IP_R1	1	518.713134765625	2	518.769114	1035.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.155	1	41.155	40.655	41.655	0								0	0	0	0.15451	1	14193	14193		6.2058	0.97511	1				18739	1325	13476	13580	18374	18374					0.007334463437018712
GVFCCGRFF	9	Unmodified	_GVFCCGRFF_					0	0	0			REV__ENST00000347667.5_1_21:42649366-42649483:+|nuORF	REV__ENST00000347667.5_1_21:42649366-42649483:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	519.1869506835938	2	518.23059	1034.44663	-0.76343	-0.00039563	-0.5604	-0.00029042	-1.3238	-0.00068605	518.2302015178964	36.82	1.3183	36.82	35.982	37.301	0					59	25	4	0	0	0	0.72507	1	12164	12164		4.756	1.8668	1	75676000	+		18740	23784	13477	13581	18375	18375					-0.06921766677965024
GVFDEWCQ	8	Unmodified	_GVFDEWCQ_					0	0	0			REV__ENST00000588087.5_1_17:76116732-76122925:-|nuORF	REV__ENST00000588087.5_1_17:76116732-76122925:-|nuORF	MSMS	A375_MHC_IP_R1	1	492.1959228515625	2	492.20001	982.385467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.746	1	51.746	51.246	52.246	0								0	0	0	0.16876	1	18377	18377		5.7604	1.0044	1		+		18741	19276	13478	13582	18376	18376					-0.10643000176412443
GVFDGLHTV	9	Unmodified	_GVFDGLHTV_					0	0	0		ENSG00000169814|ENST00000643237|BTD;nc|ENSG00000169814|P43251|BTD;nc|ENSG00000169814|P43251-3|BTD;nc|ENSG00000169814|P43251-2|BTD	ENSG00000169814|ENST00000643237|BTD	ENSG00000169814|ENST00000643237|BTD	MULTI-SECPEP	A375_MHC_IP_R1	1	473.1453552246094	2	472.745442	943.476331	-0.4013	-0.00018971	-0.34224	-0.00016179	-0.74354	-0.0003515	472.74520823975837	77.699	0.76463	77.699	77.386	78.15	0					44	14	4	0	0	0	0.01139	1	28299	28299		92.822	48.415	1	26401000			18742	7440	13479	13583	18377	18377					0.00233211863383076
GVFDGLHTV	9	Unmodified	_GVFDGLHTV_					0	0	0		ENSG00000169814|ENST00000643237|BTD;nc|ENSG00000169814|P43251|BTD;nc|ENSG00000169814|P43251-3|BTD;nc|ENSG00000169814|P43251-2|BTD	ENSG00000169814|ENST00000643237|BTD	ENSG00000169814|ENST00000643237|BTD	MULTI-SECPEP	A375_MHC_IP_R2	2	473.1453552246094	2	472.745442	943.476331	-0.56788	-0.00026846	0.15122	7.1487E-05	-0.41667	-0.00019698	472.7454365320152	76.886	0.96352	77.628	77.252	78.216	0.74293					49	18	4	0	0	0	0.016207	1	29142	29142		97.075	66.438	1	25804000			18743	7440	13479	13583	18378	18378					0.00233211863383076
GVFFHFFAQ	9	Unmodified	_GVFFHFFAQ_					0	0	0			REV__ENSG00000221931|ENST00000327930|OR6X1	REV__ENSG00000221931|ENST00000327930|OR6X1	MULTI-MSMS	A375_MHC_IP_R1	1	550.23486328125	2	550.271627	1098.5287	-0.5643	-0.00031052	2.7619	0.0015198	2.1976	0.0012093	550.2738152598706	64.262	0.65891	64.262	63.887	64.546	0					19	12	2	0	0	0	0.62719	1	23260	23260		13.508	0.97634	1	1754900	+		18744	22695	13480	13584	18379	18379					-0.01662205003026429
GVFGGRGA	8	Unmodified	_GVFGGRGA_					0	0	0		ENST00000406775.6_2_7:69064112-69064247:+|nuORF	ENST00000406775.6_2_7:69064112-69064247:+|nuORF	ENST00000406775.6_2_7:69064112-69064247:+|nuORF	MSMS	A375_MHC_IP_R1	1	360.6239318847656	2	360.693013	719.371472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.338	1	19.338	18.838	19.838	0								0	0	0	0.16876	1	4721	4721		2.8892	0.31174	1				18745	11602	13481	13585	18380	18380					0.0005613517746496655
GVFGKIKI	8	Unmodified	_GVFGKIKI_					0	0	0			REV__tr|U7SEM2|U7SEM2_FUSNUCRISPR-associatedendoribonucleasecas6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02350PE=4SV=1	REV__tr|U7SEM2|U7SEM2_FUSNUCRISPR-associatedendoribonucleasecas6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02350PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	430.96051025390625	2	431.281463	860.548374	-0.39395	-0.0001699	0.9142	0.00039428	0.52025	0.00022437	431.28160585220104	40.698	0.25514	41.472	41.335	41.59	0.77451					7	4	2	0	0	0	0.972	1	15089	15089		5.7604	1.0044	1	699300	+		18746	28161	13482	13586	18381	18381					0.11252171007743073
GVFGKIKI	8	Unmodified	_GVFGKIKI_					0	0	0			REV__tr|U7SEM2|U7SEM2_FUSNUCRISPR-associatedendoribonucleasecas6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02350PE=4SV=1	REV__tr|U7SEM2|U7SEM2_FUSNUCRISPR-associatedendoribonucleasecas6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02350PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	431.281463	860.548374	-0.35527	-0.00015322	-0.10994	-4.7417E-05	-0.46521	-0.00020064	431.28135692994675	41.767	0.36052	41.767	41.571	41.932	0	0.14706	-0.0001093	NaN	5.7604	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	905120	+		18747	28161	13482	13586							0.11252171007743073
GVFLPYSFY	9	Unmodified	_GVFLPYSFY_					0	0	0			REV__nc|ENSG00000021574|Q9UBP0-2|SPAST	REV__nc|ENSG00000021574|Q9UBP0-2|SPAST	MULTI-MSMS	A375_MHC_IP_R2	2	547.6846923828125	2	546.773668	1091.53278	-1.0643	-0.00058194	-0.37442	-0.00020472	-1.4387	-0.00078667	546.7733858420759	49.469	1.1173	50.226	49.588	50.706	0.75737					50	21	4	0	0	0	0.50735	1	18436	18436		19.439	0	1	8332400	+		18748	16268	13483	13587	18382	18382					-0.009321602999534662
GVFPLYLLAIK	11	Unmodified	_GVFPLYLLAIK_					0	0	0			REV__ENST00000553480.1_1_14:45332201-45332396:-|nuORF	REV__ENST00000553480.1_1_14:45332201-45332396:-|nuORF	MSMS	A375_MHC_IP_R1	1	617.3860473632812	2	617.383917	1232.75328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.479	1	34.479	33.979	34.979	0								0	0	0	0.1629	1	11369	11369		3.5965	1.9439	1		+		18749	26066	13484	13588	18383	18383					0.14621485027419112
GVFSAFITN	9	Unmodified	_GVFSAFITN_					0	0	0			REV__SV2B|p.G641E|2|0.25|ENSG00000185518|chr15:91292422-91292422|G/A|missense_variant	REV__SV2B|p.G641E|2|0.25|ENSG00000185518|chr15:91292422-91292422|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	478.68231201171875	2	478.247818	954.481082	-0.39704	-0.00018988	-1.1267	-0.00053882	-1.5237	-0.0007287	478.24769543566464	72.889	0.30352	72.889	72.728	73.031	0					6	5	2	0	0	0	0.6898	1	26465	26465		7.9102	0	1	623740	+		18750	21898	13485	13589	18384	18384					0.0020209600612588474
GVFSCMYF	8	Unmodified	_GVFSCMYF_					0	0	0		ENST00000418244.5_1_1:63787501-63787690:-|nuORF	ENST00000418244.5_1_1:63787501-63787690:-|nuORF	ENST00000418244.5_1_1:63787501-63787690:-|nuORF	MSMS	A375_MHC_IP_R2	2	477.2001953125	2	477.198425	952.382296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.342	1	68.078	67.578	68.578	0.73631								0	0	0	0.16876	1	25512	25512		2.8892	0	1				18751	11703	13486	13590	18385	18385					-0.0957996655477018
GVFSEPSEST	10	Unmodified	_GVFSEPSEST_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	A375_MHC_IP_R2	2	520.2495727539062	2	520.232561	1038.45057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.677	1	88.409	87.909	88.909	0.7318								0	0	0	0.1552	1	33350	33350		3.9444	1.3669	1				18752	6151;14694	13487	13591	18386	18386					-0.06711727169545156
GVFVVAVFWII	11	Unmodified	_GVFVVAVFWII_					0	0	0		nc|ENSG00000146416|Q9NVV5-1|AIG1;nc|ENSG00000146416|Q9NVV5-6|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;ENSG00000146416|ENST00000357847|AIG1	nc|ENSG00000146416|Q9NVV5-1|AIG1	nc|ENSG00000146416|Q9NVV5-1|AIG1	MULTI-MSMS	A375_MHC_IP_R1	1	417.3149719238281	3	417.249632	1248.72707	0.13068	5.4527E-05	-0.38874	-0.0001622	-0.25806	-0.00010767	417.2495138215315	76.759	0.50886	76.759	76.421	76.93	0					14	9	2	0	0	0	0.72798	1	27988	27988		5.4027	0	1	1991100			18753	14667	13488	13592	18387	18387					0.11265215855996757
GVGAGHGG	8	Unmodified	_GVGAGHGG_					0	0	0		nc|ENSG00000167644|Q9GZP8-2|IMUP;ENSG00000167644|ENST00000301246|C19orf33;ENST00000589986.2_1_19:38794923-38795601:+|nuORF	nc|ENSG00000167644|Q9GZP8-2|IMUP	nc|ENSG00000167644|Q9GZP8-2|IMUP	MULTI-SECPEP	A375_MHC_IP_R2	2	611.7089233398438	1	611.289599	610.282323	-0.95753	-0.00058533	4.2024	0.0025689	3.2449	0.0019836	611.2961156098551	29.839	0.35279	30.538	30.335	30.688	0.69872					9	6	2	0	0	0	0.972	1	10409	10409		0.79363	0.79363	1	890870			18754	7202	13489	13593	18388	18388					-0.03840699782051615
GVGFVAKL	8	Unmodified	_GVGFVAKL_					0	0	0		ENSG00000213903|ENST00000345363|LTB4R	ENSG00000213903|ENST00000345363|LTB4R	ENSG00000213903|ENST00000345363|LTB4R	MULTI-SECPEP	A375_MHC_IP_R1	1	396.1446533203125	2	395.744714	789.474875	-0.052079	-2.061E-05	0.31232	0.0001236	0.26024	0.00010299	395.744760396272	74.365	0.50817	74.365	74.095	74.604	0					20	9	3	0	0	0	0.90851	1	27064	27064		17.087	1.3183	1	3548000			18755	9587	13490	13594	18389	18389					0.07171622565272173
GVGFVAKL	8	Unmodified	_GVGFVAKL_					0	0	0		ENSG00000213903|ENST00000345363|LTB4R	ENSG00000213903|ENST00000345363|LTB4R	ENSG00000213903|ENST00000345363|LTB4R	MULTI-SECPEP	A375_MHC_IP_R2	2	396.1447448730469	2	395.744714	789.474875	-0.086223	-3.4122E-05	0.30526	0.0001208	0.21903	8.6682E-05	395.74474916671255	73.259	0.6619	73.994	73.684	74.345	0.73541					23	12	3	0	0	0	0.96296	1	27817	27817		10.183	0	1	2638200			18756	9587	13490	13594	18390	18390					0.07171622565272173
GVGISTVVSRG	11	Unmodified	_GVGISTVVSRG_					0	0	0		tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	516.6948852539062	2	516.29583	1030.57711	-0.67067	-0.00034626	-0.56432	-0.00029136	-1.235	-0.00063762	516.295313684829	125.13	0.70116	125.13	124.65	125.35	0					19	13	3	0	0	0	0.72801	1	47460	47460		10.8	5.0677	1	26333000			18757	29945	13491	13595	18391	18391					0.06304243846238933
GVGIVKSL	8	Unmodified	_GVGIVKSL_					0	0	0			REV__tr|U7SUB9|U7SUB9_FUSNUROKfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01370PE=3SV=1	REV__tr|U7SUB9|U7SUB9_FUSNUROKfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01370PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	387.1496887207031	2	386.749996	771.485439	-0.31314	-0.00012111	0.37618	0.00014549	0.063048	2.4384E-05	386.75008589062236	54.747	0.61032	55.498	55.219	55.83	0.75075					21	11	3	0	0	0	0.64068	1	20653	20653		40.449	8.1431	1	6083300	+		18758	28545	13492	13596	18392	18392					0.0905560521971438
GVGKGRTV	8	Unmodified	_GVGKGRTV_					0	0	0		nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;SBNO2|p.L973Wfs*76|1|0.29|ENSG00000064932|chr19:1110856-1110856|G/-|frameshift_variant;ENST00000592222.5_1_19:1115804-1132196:-|nuORF	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	MSMS	A375_MHC_IP_R1	1	387.2998962402344	2	387.235045	772.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.012	1	24.012	23.512	24.512	0								0	0	0	0.16876	1	6712	6712		2.5775	0.27475	1				18759	1363	13493	13597	18393	18393					0.060206662743780726
GVGKHGRG	8	Unmodified	_GVGKHGRG_					0	0	0			REV__ENST00000607001.1_1_5:72794026-72794098:-|nuORF	REV__ENST00000607001.1_1_5:72794026-72794098:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	384.61749267578125	2	384.217186	766.419819	0.42078	0.00016167	0.31833	0.00012231	0.73911	0.00028398	384.2171969681064	93.209	2.3365	93.209	91.604	93.941	0					71	45	3	0	0	0	0.77839	1	34475	34475		0.79363	0	1	2471300	+		18760	26542	13494	13598	18394	18394					0.02726628817379151
GVGKHGRG	8	Unmodified	_GVGKHGRG_					0	0	0			REV__ENST00000607001.1_1_5:72794026-72794098:-|nuORF	REV__ENST00000607001.1_1_5:72794026-72794098:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	384.616943359375	2	384.217186	766.419819	-0.030148	-1.1584E-05	0.66447	0.0002553	0.63433	0.00024372	384.21725791981476	92.854	2.5341	93.593	91.822	94.356	0.73901					87	49	3	0	0	0	0.77839	1	35235	35235		0.79363	0.79363	1	1900800	+		18761	26542	13494	13598	18395	18395					0.02726628817379151
GVGLGWHC	8	Unmodified	_GVGLGWHC_					0	0	0			REV__ENST00000428886.6_1_11:6638445-6640631:-|nuORF	REV__ENST00000428886.6_1_11:6638445-6640631:-|nuORF	MSMS	A375_MHC_IP_R1	1	414.65863037109375	2	414.694698	827.374843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.369	1	44.369	43.869	44.869	0								0	0	0	0.16876	1	15477	15477		11.114	1.767	1		+		18762	24683	13495	13599	18396	18396					-0.045749380401844064
GVGLTQRR	8	Unmodified	_GVGLTQRR_					0	0	0		ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	444.1648254394531	2	443.764501	885.514448	-0.0037512	-1.6646E-06	0.22347	9.9168E-05	0.21972	9.7504E-05	443.7645580416056	104.77	1.317	104.77	104.29	105.6	0					49	25	3	0	0	0	0.972	1	38359	38359		0.79363	0	1	4798100			18763	10752	13496	13600	18397	18397					0.06711142568701689
GVGLTQRR	8	Unmodified	_GVGLTQRR_					0	0	0		ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	444.1650695800781	2	443.764501	885.514448	0.17898	7.9426E-05	0.42708	0.00018952	0.60606	0.00026895	443.76460729236123	107.98	0.81339	107.98	107.54	108.36	0					29	15	2	0	0	0	0.972	1	39581	39581		2.5775	0.27475	1	4888500			18764	10752	13496	13600	18398	18398					0.06711142568701689
GVGLTQRR	8	Unmodified	_GVGLTQRR_					0	0	0		ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	444.163818359375	2	443.764501	885.514448	-0.41719	-0.00018514	-0.17628	-7.8225E-05	-0.59347	-0.00026336	443.76428805669974	129.1	0.45532	129.34	129.16	129.62	0.23946					18	8	3	0	0	0	0.972	1	50720	50720		2.5775	0.27475	1	23915000			18765	10752	13496	13600	18399	18399					0.06711142568701689
GVGLTQRR	8	Unmodified	_GVGLTQRR_					0	0	0		ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	444.1645812988281	2	443.764501	885.514448	-0.4266	-0.00018931	0.43669	0.00019379	0.010084	4.4747E-06	443.7645159289317	106.61	1.0163	107.37	106.83	107.85	0.75977					53	19	4	0	0	0	0.972	1	40240	40240		2.5775	0.27475	1	5669200			18766	10752	13496	13600	18400	18400					0.06711142568701689
GVGLTQRR	8	Unmodified	_GVGLTQRR_					0	0	0		ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	444.1644287109375	2	443.764501	885.514448	-0.30909	-0.00013716	0.026666	1.1833E-05	-0.28242	-0.00012533	443.76442132534197	104.54	1.0176	105.3	104.85	105.87	0.76308					39	19	3	0	0	0	0.972	1	39584	39584		0.79363	0	1	6899800			18767	10752	13496	13600	18401	18401					0.06711142568701689
GVGLTQRR	8	Unmodified	_GVGLTQRR_					0	0	0		ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	443.764501	885.514448	-0.2156	-9.5678E-05	0.52333	0.00023223	0.30772	0.00013656	443.76467733125503	129.36	0.55952	129.36	129.14	129.7	0	0.0084224	0.00056177	NaN	2.5775	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13098000			18768	10752	13496	13600							0.06711142568701689
GVGLTQRR	8	Unmodified	_GVGLTQRR_					0	0	0		ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	443.764501	885.514448	0.16165	7.1735E-05	0.58098	0.00025782	0.74264	0.00032956	443.7646937401884	107.34	0.66492	107.34	106.88	107.54	0	-0.013075	6.7635E-05	NaN	2.5775	33	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5385900			18769	10752	13496	13600							0.06711142568701689
GVGPIRKV	8	Unmodified	_GVGPIRKV_					0	0	0		ENSG00000047932|ENST00000368498|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC;nc|ENSG00000047932|Q9HD26-3|GOPC	ENSG00000047932|ENST00000368498|GOPC	ENSG00000047932|ENST00000368498|GOPC	MULTI-SECPEP	A375_MHC_IP_R1	1	413.66888427734375	2	413.268887	824.523222	0.092486	3.8221E-05	0.10803	4.4646E-05	0.20052	8.2868E-05	413.2688930743904	23.304	0.917	23.304	23.125	24.042	0					36	17	4	0	0	0	0.096514	1	6377	6377		101.72	54.801	1	64684000			18770	1209	13497	13601	18402	18402					0.10394116205179671
GVGPIRKV	8	Unmodified	_GVGPIRKV_					0	0	0		ENSG00000047932|ENST00000368498|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC;nc|ENSG00000047932|Q9HD26-3|GOPC	ENSG00000047932|ENST00000368498|GOPC	ENSG00000047932|ENST00000368498|GOPC	MULTI-MSMS	A375_MHC_IP_R2	2	413.66864013671875	2	413.268887	824.523222	-0.31771	-0.0001313	0.11909	4.9217E-05	-0.19862	-8.2082E-05	413.2689008450506	20.925	0.81011	21.535	21.109	21.919	0.61029					39	15	3	0	0	0	0.19889	1	6486	6486		67.344	22.937	1	11829000			18771	1209	13497	13601	18403	18403					0.10394116205179671
GVGPVPARA	9	Unmodified	_GVGPVPARA_					0	0	0		ENSG00000129636|ENST00000320640|ITFG1	ENSG00000129636|ENST00000320640|ITFG1	ENSG00000129636|ENST00000320640|ITFG1	MULTI-MSMS	A375_MHC_IP_R1	1	412.6429748535156	2	412.24287	822.471186	-0.034965	-1.4414E-05	0.054062	2.2287E-05	0.019097	7.8727E-06	412.2428201189817	26.986	0.50149	26.986	26.779	27.28	0					23	9	3	0	0	0	0.026461	1	8107	8107		77.984	27.129	1	11286000			18772	4201	13498	13602	18404	18404					0.05284952791419073
GVGPVPARA	9	Unmodified	_GVGPVPARA_					0	0	0		ENSG00000129636|ENST00000320640|ITFG1	ENSG00000129636|ENST00000320640|ITFG1	ENSG00000129636|ENST00000320640|ITFG1	MULTI-SECPEP	A375_MHC_IP_R2	2	412.64263916015625	2	412.24287	822.471186	-0.37688	-0.00015537	0.11914	4.9117E-05	-0.25774	-0.00010625	412.24285163677854	26.323	0.66079	26.983	26.805	27.466	0.65992					22	12	3	0	0	0	0.043556	1	8903	8903		89.427	38.572	1	9902000			18773	4201	13498	13602	18405	18405					0.05284952791419073
GVGQRGRV	8	Unmodified	_GVGQRGRV_					0	0	0			REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF	REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	829.1968994140625	1	828.47986	827.472583	-0.32649	-0.00027049	0.21924	0.00018163	-0.10725	-8.8855E-05	828.4799753303399	100.91	1.5695	100.91	100.13	101.7	0					51	30	2	0	0	0	0.7779	1	36865	36865		2.5775	0	1	7522100	+		18774	26436	13499	13603	18406	18406					0.051945868801908546
GVGQRGRV	8	Unmodified	_GVGQRGRV_					0	0	0			REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF	REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	828.47986	827.472583	-0.56829	-0.00047082	0.42026	0.00034817	-0.14804	-0.00012265	828.4801539501582	100.19	1.5837	100.96	100.37	101.96	0.76278	0.021306	0.0001075	NaN	2.5775	39	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7519300	+		18775	26436	13499	13603							0.051945868801908546
GVGSSNVGVQ	10	Unmodified	_GVGSSNVGVQ_					0	0	0		ENST00000520776.5_1_17:45405719-45473360:+|nuORF;ENSG00000178852|ENST00000331493|EFCAB13;nc|ENSG00000178852|Q8IY85-2|EFCAB13	ENST00000520776.5_1_17:45405719-45473360:+|nuORF	ENST00000520776.5_1_17:45405719-45473360:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	903.3749389648438	1	903.453036	902.445759	-0.23947	-0.00021635	-1.9145	-0.0017297	-2.154	-0.001946	903.452352861214	116.18	1.1196	116.84	116.11	117.23	0.65962					30	21	2	0	0	0	0.87163	1	43585	43585		19.257	14.501	1	38615000			18776	8182	13500	13604	18407	18407					-0.009365665216478192
GVGSVPGV	8	Unmodified	_GVGSVPGV_					0	0	0			REV__ENST00000356948.10_2_19:811026-811482:+|nuORF	REV__ENST00000356948.10_2_19:811026-811482:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	672.5066528320312	1	671.372266	670.36499	-0.58417	-0.0003922	1.2398	0.00083237	0.65563	0.00044017	671.3735485609665	100.86	0.15141	100.86	100.74	100.89	0					4	2	2	0	0	0	0.77781	1	37079	37079		2.8892	0	1	523490	+		18777	23838	13501	13605	18408	18408					0.016621972261077644
GVHEWAWPAR	10	Unmodified	_GVHEWAWPAR_					0	0	0			REV__ENST00000590513.2_1_17:40704842-40705703:-|nuORF	REV__ENST00000590513.2_1_17:40704842-40705703:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	403.9482421875	3	403.536835	1207.58868	-0.34488	-0.00013917	-0.73032	-0.00029471	-1.0752	-0.00043388	403.8709278946494	55.95	0.40493	55.95	55.738	56.143	0					11	7	2	0	0	0	0.93405	1	20076	20076		5.0475	1.9753	1	1465300	+		18778	26434	13502	13606	18409	18409					-0.006815143397943757
GVHIEEKKKSP	11	Unmodified	_GVHIEEKKKSP_					0	0	0		ENSG00000183454|ENST00000330684|GRIN2A;nc|ENSG00000183454|Q12879-2|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	MULTI-MSMS	A375_MHC_IP_R2	2	417.94647216796875	3	417.906705	1250.69829	-0.020865	-8.7197E-06	0.58405	0.00024408	0.56319	0.00023536	417.9070859653749	27.598	0.40415	28.276	28.098	28.502	0.67857					15	7	3	0	0	0	0.65093	1	9525	9525		15.538	5.7742	1	5516100			18779	8496	13503	13607	18410	18410					0.08296446488884612
GVHIVSEHW	9	Unmodified	_GVHIVSEHW_					0	0	0		ENSG00000163781|ENST00000260810|TOPBP1;ENST00000513818.1_1_3:133337003-133343000:-|nuORF	ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	355.5820007324219	3	355.182169	1062.52468	0.02642	9.3839E-06	-0.085119	-3.0233E-05	-0.058699	-2.0849E-05	355.1820898672051	43.593	0.40799	43.593	43.451	43.859	0					13	7	2	0	0	0	0.28418	1	15188	15188		27.629	22.332	1	2731800			18780	6718	13504	13608	18411	18411					-0.004082944967194635
GVHIVSEHW	9	Unmodified	_GVHIVSEHW_					0	0	0		ENSG00000163781|ENST00000260810|TOPBP1;ENST00000513818.1_1_3:133337003-133343000:-|nuORF	ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	MULTI-MSMS	A375_MHC_IP_R2	2	355.4598388671875	3	355.182169	1062.52468	-0.1485	-5.2744E-05	-0.68675	-0.00024392	-0.83524	-0.00029666	355.1818890253014	42.71	0.40515	43.482	43.319	43.724	0.7724					14	7	2	0	0	0	0.67372	1	15982	15982		5.7319	0	1	1864200			18781	6718	13504	13608	18412	18412					-0.004082944967194635
GVHKRYFRKI	10	Unmodified	_GVHKRYFRKI_					0	0	0		nc|ENSG00000183918|O60880-4|SH2D1A;ENSG00000183918|ENST00000371139|SH2D1A;ENST00000491950.5_1_X:123480470-123505238:+|nuORF	nc|ENSG00000183918|O60880-4|SH2D1A	nc|ENSG00000183918|O60880-4|SH2D1A	MSMS	A375_MHC_IP_R1	1	652.3884887695312	2	652.390931	1302.76731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.46	1	107.46	106.96	107.96	0								0	0	0	0.1552	1	39431	39431		3.9444	1.6616	1				18782	8542	13505	13609	18413	18413					0.1280357529910816
GVHMSQSTNI	10	Unmodified	_GVHMSQSTNI_					0	0	0			REV__nc|ENSG00000074803|Q13621-3|SLC12A1	REV__nc|ENSG00000074803|Q13621-3|SLC12A1	MULTI-MSMS	A375_MHC_IP_R2	2	537.7083129882812	2	537.255848	1072.49714	-0.98605	-0.00052976	0.20727	0.00011136	-0.77879	-0.00041841	537.7572486371361	66.448	1.222	67.185	66.882	68.104	0.73631					47	23	3	0	0	0	0.70496	1	25219	25219		10.074	0	1	1241400	+		18783	16642	13506	13610	18414	18414					-0.036205658192557166
GVHPFDDYWEL	11	Unmodified	_GVHPFDDYWEL_					0	0	0			REV__ENST00000529231.1_8:145488904-145515052:-|nuORF	REV__ENST00000529231.1_8:145488904-145515052:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	460.1921081542969	3	459.875182	1376.60372	-0.23954	-0.00011016	-0.45686	-0.0002101	-0.6964	-0.00032026	459.87501185787346	86.189	0.25484	86.922	86.743	86.998	0.733					7	4	2	0	0	0	0.73557	1	32763	32763		1.4551	0	1	1237000	+		18784	22911	13507	13611	18415	18415					-0.06952112053113524
GVHPFDDYWEL	11	Unmodified	_GVHPFDDYWEL_					0	0	0			REV__ENST00000529231.1_8:145488904-145515052:-|nuORF	REV__ENST00000529231.1_8:145488904-145515052:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	459.875182	1376.60372	-0.4027	-0.00018519	-0.22947	-0.00010553	-0.63217	-0.00029072	460.20947150965463	86.753	0.35411	86.753	86.527	86.881	0	-0.084198	0.00018373	NaN	1.4551	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	911590	+		18785	22911	13507	13611							-0.06952112053113524
GVHPFDDYWEL	11	Unmodified	_GVHPFDDYWEL_					0	0	0			REV__ENST00000529231.1_8:145488904-145515052:-|nuORF	REV__ENST00000529231.1_8:145488904-145515052:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	459.875182	1376.60372	-0.23954	-0.00011016	-0.45686	-0.0002101	-0.6964	-0.00032026	459.87501185787346	86.189	0.25484	86.922	86.743	86.998	0.733	0.084198	-0.00012998	NaN	1.4551	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1237000	+		18786	22911	13507	13611							-0.06952112053113524
GVHRGFGRRRR	11	Unmodified	_GVHRGFGRRRR_					0	0	0			REV__ENST00000283429.10_1_16:4524572-4524719:-|nuORF	REV__ENST00000283429.10_1_16:4524572-4524719:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	452.3124694824219	3	451.932693	1352.77625	-0.41355	-0.0001869	0.2216	0.00010015	-0.19195	-8.6749E-05	451.9326882486111	131.49	1.3163	131.49	130.62	131.93	0					115	25	6	0	0	0	0.73886	1	50729	50729		0.45452	0.45452	1	186730000	+		18787	23330	13508	13612	18416	18416					0.11397361708145581
GVHRGFGRRRR	11	Unmodified	_GVHRGFGRRRR_					0	0	0			REV__ENST00000283429.10_1_16:4524572-4524719:-|nuORF	REV__ENST00000283429.10_1_16:4524572-4524719:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	452.31317138671875	3	451.932693	1352.77625	-0.2497	-0.00011285	0.16467	7.4418E-05	-0.085038	-3.8432E-05	451.9326706848207	131.33	1.525	131.52	130.48	132	0.18953					114	29	5	0	0	0	0.73886	1	51710	51710		0.45452	0.45452	1	215780000	+		18788	23330	13508	13612	18417	18417					0.11397361708145581
GVHRGFGRRRR	11	Unmodified	_GVHRGFGRRRR_					0	0	0			REV__ENST00000283429.10_1_16:4524572-4524719:-|nuORF	REV__ENST00000283429.10_1_16:4524572-4524719:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	677.7943115234375	2	677.395402	1352.77625	-0.6191	-0.00041937	0.07631	5.1692E-05	-0.54279	-0.00036768	677.3952939936659	132.24	6.0157	132.43	131.95	137.97	0.18953					345	117	6	0	0	0	0.73886	1	53647	53647		1.3295	1.3295	1	826630000	+		18789	23330	13508	13612	18418	18418					0.11397361708145581
GVHRGFGRRRR	11	Unmodified	_GVHRGFGRRRR_					0	0	0			REV__ENST00000283429.10_1_16:4524572-4524719:-|nuORF	REV__ENST00000283429.10_1_16:4524572-4524719:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	451.932693	1352.77625	-0.41355	-0.0001869	0.2216	0.00010015	-0.19195	-8.6749E-05	451.9326882486111	131.49	1.3163	131.49	130.62	131.93	0	-0.011387	3.7385E-05	NaN	0.45452	115	25	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186730000	+		18790	23330	13508	13612							0.11397361708145581
GVHSRQHQV	9	Unmodified	_GVHSRQHQV_					0	0	0			REV__ENSG00000189298|ENST00000252211|ZKSCAN3	REV__ENSG00000189298|ENST00000252211|ZKSCAN3	MULTI-MSMS	A375_MHC_IP_R1	1	524.6755981445312	2	524.275764	1046.53697	-0.21143	-0.00011085	0.19144	0.00010037	-0.019989	-1.048E-05	524.2758175359447	70.008	0.96614	70.008	69.579	70.545	0					39	18	3	0	0	0	0.65721	1	25414	25414		10.824	10.824	1	6816100	+		18791	22148	13509	13613	18419	18419					0.015567419663284454
GVHSRQHQV	9	Unmodified	_GVHSRQHQV_					0	0	0			REV__ENSG00000189298|ENST00000252211|ZKSCAN3	REV__ENSG00000189298|ENST00000252211|ZKSCAN3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	524.275764	1046.53697	-0.42823	-0.00022451	-0.13328	-6.9876E-05	-0.56151	-0.00029439	524.2756829943766	69.433	1.067	70.168	69.676	70.743	0.73421	0.079849	-0.00018783	NaN	10.824	50	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5963600	+		18792	22148	13509	13613							0.015567419663284454
GVHTFPAVLQ	10	Unmodified	_GVHTFPAVLQ_					0	0	0		nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211896|P01857|IGHG1;CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211893|P01859-1|IGHG2	nc|ENSG00000211893|P01859-1|IGHG2	MULTI-SECPEP	A375_MHC_IP_R2	2	534.6361083984375	2	534.795466	1067.57638	-0.87552	-0.00046823	1.1877	0.00063515	0.31213	0.00016693	535.2981422728662	66.912	0.25374	67.648	67.445	67.698	0.73631					6	4	2	0	0	0	0.6774	1	25302	25302		34.402	16.255	1	939940		+	18793	572	13510	13614	18420	18420					0.045294491971844764
GVHTGSDQIY	10	Unmodified	_GVHTGSDQIY_					0	0	0			REV__nc|ENSG00000292357|P15509-6|CSF2RA	REV__nc|ENSG00000292357|P15509-6|CSF2RA	MULTI-MSMS	A375_MHC_IP_R1	1	538.69873046875	2	538.753995	1075.49344	-0.58191	-0.00031351	0.6491	0.0003497	0.067188	3.6198E-05	538.7543259428185	62.155	1.7912	62.155	61.686	63.477	0					59	34	2	0	0	0	0.70651	1	22787	22787		9.3831	0	1	2431500	+		18794	22355	13511	13615	18421	18421					-0.041289123214710344
GVHTVHVTF	9	Unmodified	_GVHTVHVTF_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	A375_MHC_IP_R2	2	499.1664733886719	2	498.766709	995.518865	-0.70696	-0.00035261	0.10701	5.3372E-05	-0.59995	-0.00029923	498.76665454255385	37.822	0.6158	38.597	38.33	38.946	0.77451					29	11	4	0	0	0	0.010868	1	13838	13838		179.23	139.27	1	11279000			18795	9093	13512	13616	18422	18422					0.020926069916185952
GVHVRIPK	8	Unmodified	_GVHVRIPK_					0	0	0		ENSG00000131730|ENST00000254035|CKMT2	ENSG00000131730|ENST00000254035|CKMT2	ENSG00000131730|ENST00000254035|CKMT2	MSMS	A375_MHC_IP_R1	1	453.3213806152344	2	453.287611	904.56067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.874	1	44.874	44.374	45.374	0								0	0	0	0.16876	1	15676	15676		2.8892	0.31174	1				18796	4346	13513	13617	18423	18423					0.10457207470801677
GVHVSFTTGST	11	Unmodified	_GVHVSFTTGST_					0	0	0		ENSG00000275342|ENST00000615670|PRAG1	ENSG00000275342|ENST00000615670|PRAG1	ENSG00000275342|ENST00000615670|PRAG1	MULTI-MSMS	A375_MHC_IP_R2	2	546.6807861328125	2	546.769645	1091.52474	-1.0122	-0.00055346	1.216	0.00066488	0.20377	0.00011142	546.7703087558634	41.264	0.86317	42.038	41.692	42.555	0.77451					32	16	3	0	0	0	0.72649	1	15483	15483		12.241	0	1	4795000			18797	10010	13514	13618	18424	18424					-0.017363392873676275
GVHYSIWDFY	10	Unmodified	_GVHYSIWDFY_					0	0	0			REV__ENSG00000205403|ENST00000394634|CFI	REV__ENSG00000205403|ENST00000394634|CFI	MULTI-SECPEP	A375_MHC_IP_R2	2	429.9481201171875	3	429.532868	1285.57677	-0.48952	-0.00021027	2.734	0.0011743	2.2445	0.00096407	429.53415738421273	19.205	0.60675	19.809	19.583	20.19	0.60308					14	11	2	0	0	0	0.94421	1	5934	5934		0.69767	0.5748	1	1058400	+		18798	22572	13515	13619	18425	18425					-0.054591758736250995
GVICLDILKDN	11	Unmodified	_GVICLDILKDN_					0	0	0		ENSG00000170035|ENST00000410062|UBE2E3;ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000493707.1_1_3:23907959-23932094:+|nuORF;ENST00000475680.5_1_3:23852460-23932094:+|nuORF;nc|ENSG00000170142|P51965-2|UBE2E1;nc|ENSG00000170142|P51965-3|UBE2E1;ENSG00000170142|ENST00000306627|UBE2E1;ENSG00000182247|ENST00000396703|UBE2E2	ENSG00000170035|ENST00000410062|UBE2E3;ENST00000493707.1_1_3:23907959-23932094:+|nuORF	ENSG00000170035|ENST00000410062|UBE2E3	MSMS	A375_MHC_IP_R2	2	601.8936157226562	2	601.826106	1201.63766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.45	1	124.78	124.28	125.28	0.32969								0	0	0	0.14443	1	48137	48137		24.021	2.4836	1				18799	7464;7474	13516	13620	18426	18426					0.04490593114314834
GVIDGHIYAV	10	Unmodified	_GVIDGHIYAV_					0	0	0		ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	522.6793823242188	2	522.279649	1042.54475	-0.27508	-0.00014367	0.11154	5.8257E-05	-0.16353	-8.541E-05	522.2797753020888	72.01	0.65736	72.01	71.715	72.372	0					32	12	4	0	0	0	0.043676	1	26141	26141		81.613	59.866	1	10671000			18800	1706	13517	13621	18427	18427					0.025174564432063562
GVIDGHIYAV	10	Unmodified	_GVIDGHIYAV_					0	0	0		ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	522.67919921875	2	522.279649	1042.54475	-0.78212	-0.00040849	-0.20462	-0.00010687	-0.98674	-0.00051535	522.2796293785361	71.259	0.6583	71.993	71.656	72.314	0.73421					29	12	3	0	0	0	0.043676	1	26987	26987		81.613	47.511	1	13622000			18801	1706	13517	13621	18428	18428					0.025174564432063562
GVIDVITKTW	10	Unmodified	_GVIDVITKTW_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32;ENST00000523701.1_1_8:104413742-104414267:-|nuORF	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-MSMS	A375_MHC_IP_R1	1	567.8109130859375	2	566.324057	1130.63356	0.08806	4.9871E-05	-0.26385	-0.00014942	-0.17579	-9.9553E-05	566.3238657342448	113.42	1.167	113.42	112.89	114.06	0					56	22	4	0	0	0	0.23154	1	41544	41544		46.022	29.873	1	31860000			18802	6894	13518	13622	18429	18429					0.07346871682898382
GVIDVITKTW	10	Unmodified	_GVIDVITKTW_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32;ENST00000523701.1_1_8:104413742-104414267:-|nuORF	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-SECPEP	A375_MHC_IP_R2	2	566.7232666015625	2	566.324057	1130.63356	-0.19665	-0.00011137	0.53021	0.00030027	0.33357	0.00018891	566.3243571488182	112.58	0.96994	113.31	112.71	113.68	0.72459					48	18	4	0	0	0	0.013856	1	42365	42365		135.86	102.42	1	30582000			18803	6894	13518	13622	18430	18430					0.07346871682898382
GVIFGCLAF	9	Unmodified	_GVIFGCLAF_					0	0	0		ENST00000478555.1_1_1:205568225-205569586:+|nuORF;ENST00000465651.1_1_1:205561255-205569586:+|nuORF;nc|ENSG00000174514|Q8N468-2|MFSD4A;ENSG00000174514|ENST00000367147|MFSD4A	ENST00000478555.1_1_1:205568225-205569586:+|nuORF	ENST00000478555.1_1_1:205568225-205569586:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	464.1055603027344	2	463.743857	925.47316	-0.064574	-2.9946E-05	4.1956	0.0019457	4.131	0.0019157	463.74533869686053	71.42	0.50755	71.42	71.108	71.615	0					17	9	2	0	0	0	0.73662	1	25904	25904		9.3474	0	1	2845700			18804	7888	13519	13623	18431	18431					0.007442454850092872
GVIGRSLFFLW	11	Unmodified	_GVIGRSLFFLW_					0	0	0			REV__ENSG00000182557|ENST00000355530|SPNS3	REV__ENSG00000182557|ENST00000355530|SPNS3	MULTI-SECPEP	A375_MHC_IP_R2	2	647.7703247070312	2	647.868966	1293.72338	-0.54627	-0.00035391	0.85149	0.00055165	0.30522	0.00019774	648.3720006825218	134.91	1.3238	135.05	134.7	136.02	0.13901					39	25	2	0	0	0	0.99881	1	53092	53092		1.4819	0	1	1950700	+		18805	21699	13520	13624	18432	18432					0.08826546082127606
GVIIGRTAGRI	11	Unmodified	_GVIIGRTAGRI_					0	0	0		tr|U7SNT0|U7SNT0_FUSNUAldose1-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01938PE=3SV=1	tr|U7SNT0|U7SNT0_FUSNUAldose1-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01938PE=3SV=1	tr|U7SNT0|U7SNT0_FUSNUAldose1-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01938PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	371.5978088378906	3	371.568135	1111.68258	0.043149	1.6033E-05	0.58223	0.00021634	0.62538	0.00023237	371.9022367781859	24.699	0.71218	25.343	25.212	25.924	0.64368					18	13	2	0	0	0	0.73502	1	8308	8308		4.1166	0.52014	1	8678100			18806	29562	13521	13625	18433	18433					0.13120204762503818
GVIKAIIF	8	Unmodified	_GVIKAIIF_					0	0	0			REV__CACNG3|p.E190K|1|0.24|ENSG00000006116|chr16:24361483-24361483|G/A|missense_variant	REV__CACNG3|p.E190K|1|0.24|ENSG00000006116|chr16:24361483-24361483|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	431.1839294433594	2	430.783839	859.553125	0.10055	4.3317E-05	0.14472	6.2344E-05	0.24528	0.00010566	430.7838837472443	107.93	0.55874	107.93	107.75	108.31	0					17	10	2	0	0	0	0.91495	1	39618	39618		24.674	0	1	3011300	+		18807	15556	13522	13626	18434	18434					0.1177305515052467
GVIKLLVQRL	10	Unmodified	_GVIKLLVQRL_					0	0	0		ENSG00000186212|ENST00000334306|SOWAHB	ENSG00000186212|ENST00000334306|SOWAHB	ENSG00000186212|ENST00000334306|SOWAHB	MSMS	A375_MHC_IP_R2	2	569.713134765625	2	569.887158	1137.75976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.27	1	131.46	130.96	131.96	0.18953								0	0	0	0.15591	1	51636	51636		1.6526	0	1				18808	8732	13523	13627	18435	18435					0.19639422978843868
GVILGGAY	8	Unmodified	_GVILGGAY_					0	0	0		ENSG00000136156|ENST00000647800|ITM2B;nc|ENSG00000136156|Q9Y287-2|ITM2B	ENSG00000136156|ENST00000647800|ITM2B	ENSG00000136156|ENST00000647800|ITM2B	MULTI-MSMS	A375_MHC_IP_R2	2	749.7210083007812	1	749.419217	748.41194	-0.87849	-0.00065836	-0.38715	-0.00029013	-1.2656	-0.00094849	749.4191304494497	77.72	0.25832	78.463	78.365	78.624	0.74293					7	4	2	0	0	0	0.16638	1	29563	29563		77.196	24.862	1	1148300			18809	4760	13524	13628	18436	18436					0.02767056777236121
GVISKTFQL	9	Unmodified	_GVISKTFQL_					0	0	0		nc|ENSG00000156535|Q6YHK3-2|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;nc|ENSG00000156535|Q6YHK3-3|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	MULTI-SECPEP	A375_MHC_IP_R1	1	497.1916198730469	2	496.792392	991.570232	-0.38391	-0.00019072	-0.023329	-1.1589E-05	-0.40723	-0.00020231	496.7923769029937	74.579	1.1158	74.579	74.146	75.262	0					54	21	4	0	0	0	9.464E-05	1	27131	27131		179.17	72.233	1	38084000			18810	6199	13525	13629	18437	18437					0.07410930965670559
GVISKTFQL	9	Unmodified	_GVISKTFQL_					0	0	0		nc|ENSG00000156535|Q6YHK3-2|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;nc|ENSG00000156535|Q6YHK3-3|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	MULTI-MSMS	A375_MHC_IP_R2	2	497.1922607421875	2	496.792392	991.570232	-0.44334	-0.00022025	-0.16415	-8.1548E-05	-0.60749	-0.00030179	496.7922827742908	73.636	1.2221	74.371	73.887	75.109	0.73541					56	23	4	0	0	0	0.0066517	1	27911	27911		165.72	69.354	1	41595000			18811	6199	13525	13629	18438	18438					0.07410930965670559
GVITSKKFR	9	Unmodified	_GVITSKKFR_					0	0	0		tr|U7SN93|U7SN93_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01861PE=3SV=1	tr|U7SN93|U7SN93_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01861PE=3SV=1	tr|U7SN93|U7SN93_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01861PE=3SV=1	MSMS	A375_MHC_IP_R1	1	518.7174072265625	2	518.319109	1034.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.64	1	114.64	114.14	115.14	0								0	0	0	0.15486	1	42041	42041		2.0598	0.21551	1				18812	29545	13526	13630	18439	18439					0.10773728468188892
GVIVVDSHEPP	11	Unmodified	_GVIVVDSHEPP_					0	0	0			REV__ENST00000529802.1_1_11:126139101-126141609:+|nuORF	REV__ENST00000529802.1_1_11:126139101-126141609:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	574.1922607421875	2	574.800946	1147.58734	-0.52356	-0.00030094	-0.40597	-0.00023335	-0.92952	-0.00053429	574.8007032020531	61.614	0.90751	62.359	62.02	62.928	0.74503					44	17	4	0	0	0	0.88538	1	23377	23377		24.021	3.606	1	8552100	+		18813	17613	13527	13631	18440	18440					0.019448067808070846
GVKDPNLW	8	Unmodified	_GVKDPNLW_					0	0	0		SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000598459.5_1_19:39949480-39950711:+|nuORF	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	465.1479797363281	2	464.747985	927.481417	-0.20105	-9.3435E-05	-0.095758	-4.4503E-05	-0.2968	-0.00013794	464.7479023872285	53.549	0.45698	53.549	53.301	53.758	0					22	8	3	0	0	0	0.092435	3	19071	19071;19111;19150		96.285	34.927	1	7677000			18814	9018	13528	13632	18441;18442;18443	18441					0.01477515725991907
GVKDPNLW	8	Unmodified	_GVKDPNLW_					0	0	0		SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000598459.5_1_19:39949480-39950711:+|nuORF	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	465.1474914550781	2	464.747985	927.481417	-1.1107	-0.00051619	0.51397	0.00023887	-0.59672	-0.00027733	464.74811159955135	52.733	0.55602	53.484	53.183	53.739	0.75105					26	10	3	0	0	0	0.15346	3	19856	19856;19895;19946		85.357	37.011	1	7246700			18815	9018	13528	13632	18444;18445;18446	18444					0.01477515725991907
GVKFSVFI	8	Unmodified	_GVKFSVFI_					0	0	0		ENSG00000136197|ENST00000350427|C7orf25;nc|nan|Q9BPX7-2|C7orf25	ENSG00000136197|ENST00000350427|C7orf25	ENSG00000136197|ENST00000350427|C7orf25	MULTI-SECPEP	A375_MHC_IP_R2	2	449.1270446777344	2	448.765646	895.516739	-0.16149	-7.2471E-05	0.1418	6.3634E-05	-0.019693	-8.8373E-06	448.7653988381325	86.306	0.40978	87.039	86.845	87.255	0.73301					13	7	3	0	0	0	0.92636	1	32880	32880		16.942	2.3606	1	1511700			18816	4764	13529	13633	18447	18447					0.06480178253809754
GVKGPFGP	8	Unmodified	_GVKGPFGP_					0	0	0			REV__nc|ENSG00000084636|Q07092-2|COL16A1	REV__nc|ENSG00000084636|Q07092-2|COL16A1	MULTI-MSMS	A375_MHC_IP_R2	2	380.11346435546875	2	379.713414	757.412274	-0.24678	-9.3705E-05	-0.65732	-0.00024959	-0.9041	-0.0003433	379.713023694745	56.374	0.56185	57.124	56.693	57.255	0.75014					18	10	3	0	0	0	0.77781	1	21331	21331		2.8892	0.31174	1	3020400	+		18817	16824	13530	13634	18448	18448					0.02386476497088097
GVKIYDESSY	10	Unmodified	_GVKIYDESSY_					0	0	0			REV__ENST00000460628.1_1_3:184020551-184021585:+|nuORF	REV__ENST00000460628.1_1_3:184020551-184021585:+|nuORF	MSMS	A375_MHC_IP_R1	1	387.4454650878906	3	387.520516	1159.53972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.424	1	38.424	37.924	38.924	0								0	0	0	0.15591	1	13033	13033		0.69767	0.07084	1		+		18818	24964	13531	13635	18449	18449					-0.03366892210055994
GVKLLIKMY	9	Unmodified	_GVKLLIKMY_					0	0	0			REV__ENST00000519559.1_1_8:52732913-52752014:-|nuORF	REV__ENST00000519559.1_1_8:52732913-52752014:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	355.5793762207031	3	355.556068	1063.64637	-0.41437	-0.00014733	2.9039	0.0010325	2.4895	0.00088517	355.55689014247855	29.144	0.55788	29.144	28.845	29.403	0					20	10	4	0	0	0	0.74768	1	8995	8995		2.7352	1.2533	1	2718900	+		18819	20842	13532	13636	18450	18450					0.11709611541459708
GVKNSIGF	8	Unmodified	_GVKNSIGF_					0	0	0		ENSG00000013293|ENST00000231706|SLC7A14	ENSG00000013293|ENST00000231706|SLC7A14	ENSG00000013293|ENST00000231706|SLC7A14	MULTI-SECPEP	A375_MHC_IP_R1	1	411.62945556640625	2	411.229428	820.444303	0.060382	2.4831E-05	0.18703	7.6912E-05	0.24741	0.00010174	411.22951160209635	64.247	0.50555	64.247	63.99	64.495	0					13	9	2	0	0	0	0.972	1	23274	23274		12.532	10.229	1	2349700			18820	1017	13533	13637	18451	18451					0.026898441802472917
GVKPNPASW	9	Unmodified	_GVKPNPASW_					0	0	0		ENST00000476329.1_1_1:35998986-36020116:-|nuORF;KIAA0319L|p.L215Dfs*38|1|0.2|ENSG00000142687|chr1:35506634-35506635|AG/-|frameshift_variant;nc|ENSG00000142687|Q8IZA0-2|KIAA0319L;ENSG00000142687|ENST00000325722|KIAA0319L	ENST00000476329.1_1_1:35998986-36020116:-|nuORF	ENST00000476329.1_1_1:35998986-36020116:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	478.6534118652344	2	478.253434	954.492316	-0.67855	-0.00032452	0.26353	0.00012603	-0.41502	-0.00019848	478.2533500976517	39.837	0.81377	39.837	39.592	40.406	0					29	15	3	0	0	0	0.05021	1	13665	13665		88.954	32.777	1	6146300			18821	5329	13534	13638	18452	18452					0.013249181002720434
GVKPNPASW	9	Unmodified	_GVKPNPASW_					0	0	0		ENST00000476329.1_1_1:35998986-36020116:-|nuORF;KIAA0319L|p.L215Dfs*38|1|0.2|ENSG00000142687|chr1:35506634-35506635|AG/-|frameshift_variant;nc|ENSG00000142687|Q8IZA0-2|KIAA0319L;ENSG00000142687|ENST00000325722|KIAA0319L	ENST00000476329.1_1_1:35998986-36020116:-|nuORF	ENST00000476329.1_1_1:35998986-36020116:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	478.1058044433594	2	478.253434	954.492316	-0.74173	-0.00035473	0.14405	6.889E-05	-0.59768	-0.00028584	478.25334977941327	38.991	0.86646	39.765	39.504	40.371	0.77451					27	16	3	0	0	0	0.034037	1	14375	14375		88.954	36.686	1	6180400			18822	5329	13534	13638	18453	18453					0.013249181002720434
GVKPPQNLW	9	Unmodified	_GVKPPQNLW_					0	0	0		ENSG00000103429|ENST00000261658|BFAR;nc|ENSG00000103429|Q9NZS9-2|BFAR	ENSG00000103429|ENST00000261658|BFAR	ENSG00000103429|ENST00000261658|BFAR	MULTI-SECPEP	A375_MHC_IP_R1	1	520.1585693359375	2	519.790184	1037.56581	-0.54077	-0.00028109	-0.52	-0.00027029	-1.0608	-0.00055138	519.789947449276	61.482	1.4794	61.482	60.821	62.3	0					75	28	4	0	0	0	0.023756	1	22180	22180		92.822	39.247	1	38351000			18823	2451	13535	13639	18454	18454					0.04853466542749629
GVKPPQNLW	9	Unmodified	_GVKPPQNLW_					0	0	0		ENSG00000103429|ENST00000261658|BFAR;nc|ENSG00000103429|Q9NZS9-2|BFAR	ENSG00000103429|ENST00000261658|BFAR	ENSG00000103429|ENST00000261658|BFAR	MULTI-SECPEP	A375_MHC_IP_R2	2	520.1898803710938	2	519.790184	1037.56581	-0.9592	-0.00049859	-0.45019	-0.00023401	-1.4094	-0.00073259	519.7900041981492	60.652	1.2178	61.397	60.701	61.919	0.74503					75	23	4	0	0	0	0.033126	1	23027	23027		74.423	16.951	1	34965000			18824	2451	13535	13639	18455	18455					0.04853466542749629
GVKREPPP	8	Unmodified	_GVKREPPP_					0	0	0		nc|ENSG00000061938|Q07912-3|TNK2;ENSG00000061938|ENST00000672887|TNK2	nc|ENSG00000061938|Q07912-3|TNK2	nc|ENSG00000061938|Q07912-3|TNK2	MSMS	A375_MHC_IP_R2	2	440.2856140136719	2	440.255977	878.497401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.853	1	24.483	23.983	24.983	0.63014								0	0	0	0.16876	1	7741	7741		9.3474	3.587	1				18825	1323	13536	13640	18456	18456					0.05329221962892916
GVKRVIRKLKK	11	Unmodified	_GVKRVIRKLKK_					0	0	0			REV__tr|U7T2Z5|U7T2Z5_FUSNUAdenylate-formingenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00518PE=4SV=1	REV__tr|U7T2Z5|U7T2Z5_FUSNUAdenylate-formingenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00518PE=4SV=1	MSMS	A375_MHC_IP_R2	2	663.1755981445312	2	662.966806	1323.91906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.65	1	119.26	118.76	119.76	0.60909								0	0	0	0.16353	1	45089	45089		0.35063	0	1		+		18826	28762	13537	13641	18457	18457					0.27005556326798796
GVKVKRIIKV	10	Unmodified	_GVKVKRIIKV_					0	0	0		nc|ENSG00000131951|Q6ZRR7-2|LRRC9;nc|ENSG00000131951|Q6ZRR7|LRRC9;ENSG00000131951|ENST00000570145|LRRC9	nc|ENSG00000131951|Q6ZRR7-2|LRRC9	nc|ENSG00000131951|Q6ZRR7-2|LRRC9	MSMS	A375_MHC_IP_R2	2	570.3543701171875	2	570.402976	1138.7914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.89	1	119.5	119	120	0.60909								0	0	0	0.15628	1	45206	45206		0.45834	0.45834	1				18827	4360	13538	13642	18458	18458					0.22755415732785877
GVKVREMHIQW	11	Unmodified	_GVKVREMHIQW_					0	0	0			REV__ENST00000534096.5_1_19:50838046-50848012:-|nuORF	REV__ENST00000534096.5_1_19:50838046-50848012:-|nuORF	MSMS	A375_MHC_IP_R2	2	461.62445068359375	3	461.583568	1381.72887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.882	1	41.656	41.156	42.156	0.77451								0	0	0	0.16332	1	15153	15153		1.4551	0.12547	1		+		18828	18601	13539	13643	18459	18459					0.05327901602277052
GVLAFAFEV	9	Unmodified	_GVLAFAFEV_					0	0	0			REV__ENSG00000078295|ENST00000338316|ADCY2	REV__ENSG00000078295|ENST00000338316|ADCY2	MSMS	A375_MHC_IP_R1	1	476.720947265625	2	476.760561	951.506569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.667	1	90.667	90.167	91.167	0								0	0	0	0.15486	1	33322	33322		13.508	0.97634	1		+		18829	16710	13540	13644	18460	18460					0.028875705285713593
GVLAFAFEV	9	Unmodified	_GVLAFAFEV_					0	0	0			REV__ENSG00000078295|ENST00000338316|ADCY2	REV__ENSG00000078295|ENST00000338316|ADCY2	MSMS	A375_MHC_IP_R1	1	476.61529541015625	2	476.760561	951.506569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.804	1	92.804	92.304	93.304	0								0	0	0	0.15486	1	34110	34110		13.508	4.1604	1		+		18830	16710	13540	13644	18461	18461					0.028875705285713593
GVLAFAFEV	9	Unmodified	_GVLAFAFEV_					0	0	0			REV__ENSG00000078295|ENST00000338316|ADCY2	REV__ENSG00000078295|ENST00000338316|ADCY2	MSMS	A375_MHC_IP_R1	1	476.9293518066406	2	476.760561	951.506569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.227	1	95.227	94.727	95.727	0								0	0	0	0.15486	1	35000	35000		13.508	0.97634	1		+		18831	16710	13540	13644	18462	18462					0.028875705285713593
GVLATSGLLG	10	Unmodified	_GVLATSGLLG_					0	0	0			REV__ENSG00000196196|ENST00000354323|HRCT1	REV__ENSG00000196196|ENST00000354323|HRCT1	MULTI-SECPEP	A375_MHC_IP_R1	1	444.66351318359375	2	444.263468	886.512382	-0.049414	-2.1953E-05	0.20697	9.1948E-05	0.15755	6.9995E-05	444.2634360834085	36.109	0.45726	36.109	35.881	36.339	0					15	8	3	0	0	0	0.87163	1	12093	12093		19.257	1.1106	1	1945200	+		18832	22169	13541	13645	18463	18463					0.06458669040250697
GVLAVIKGPPL	11	Unmodified	_GVLAVIKGPPL_					0	0	0			REV__ENST00000482899.1_1_7:150737654-150742433:+|nuORF	REV__ENST00000482899.1_1_7:150737654-150742433:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	532.7471923828125	2	532.347335	1062.68012	-0.64854	-0.00034525	0.16118	8.5806E-05	-0.48736	-0.00025944	532.3471329264098	125.75	0.30434	126.05	125.92	126.23	0.2951					7	5	2	0	0	0	0.90584	1	49151	49151		17.113	1.8644	1	12579000	+		18833	22263	13542	13646	18464	18464					0.15128356304853696
GVLDHVNLLHH	11	Unmodified	_GVLDHVNLLHH_					0	0	0			REV__ENSG00000090857|ENST00000288050|PDPR	REV__ENSG00000090857|ENST00000288050|PDPR	MULTI-SECPEP	A375_MHC_IP_R1	1	417.95745849609375	3	418.563161	1252.66765	-0.11358	-4.754E-05	0.13634	5.7067E-05	0.022761	9.5267E-06	418.56299840249403	23.784	0.45657	23.784	23.635	24.092	0					19	8	3	0	0	0	0.99676	1	6538	6538		2.6312	0	1	8406800	+		18834	16932	13543	13647	18465	18465					0.05142712894507895
GVLDKLRSV	9	Unmodified	_GVLDKLRSV_					0	0	0		nc|ENSG00000100722|Q6PJT7-5|ZC3H14;nc|ENSG00000100722|Q6PJT7-10|ZC3H14;nc|ENSG00000100722|Q6PJT7-4|ZC3H14;nc|ENSG00000100722|Q6PJT7-3|ZC3H14;nc|ENSG00000100722|Q6PJT7-11|ZC3H14;nc|ENSG00000100722|Q6PJT7-9|ZC3H14;nc|ENSG00000100722|Q6PJT7-2|ZC3H14;ENSG00000100722|ENST00000251038|ZC3H14	nc|ENSG00000100722|Q6PJT7-5|ZC3H14	nc|ENSG00000100722|Q6PJT7-5|ZC3H14	MULTI-SECPEP	A375_MHC_IP_R1	1	494.203125	2	493.803291	985.59203	-0.39324	-0.00019418	-0.044277	-2.1864E-05	-0.43752	-0.00021605	493.80316835478254	61.13	0.61121	61.13	60.821	61.432	0					23	11	3	0	0	0	0.018833	1	22000	22000		117.84	25.346	1	7972600			18835	14508	13544	13648	18466	18466					0.09865735714231505
GVLDKLRSV	9	Unmodified	_GVLDKLRSV_					0	0	0		nc|ENSG00000100722|Q6PJT7-5|ZC3H14;nc|ENSG00000100722|Q6PJT7-10|ZC3H14;nc|ENSG00000100722|Q6PJT7-4|ZC3H14;nc|ENSG00000100722|Q6PJT7-3|ZC3H14;nc|ENSG00000100722|Q6PJT7-11|ZC3H14;nc|ENSG00000100722|Q6PJT7-9|ZC3H14;nc|ENSG00000100722|Q6PJT7-2|ZC3H14;ENSG00000100722|ENST00000251038|ZC3H14	nc|ENSG00000100722|Q6PJT7-5|ZC3H14	nc|ENSG00000100722|Q6PJT7-5|ZC3H14	MULTI-SECPEP	A375_MHC_IP_R2	2	494.2030334472656	2	493.803291	985.59203	-0.82775	-0.00040875	0.095608	4.7211E-05	-0.73214	-0.00036153	493.80327577278536	60.082	0.71191	60.829	60.45	61.162	0.74714					26	13	3	0	0	0	0.11887	1	22724	22724		71.708	16.934	1	9488400			18836	14508	13544	13648	18467	18467					0.09865735714231505
GVLDTLTKV	9	Unmodified	_GVLDTLTKV_					0	0	0		ENST00000495043.5_1_1:39330344-39338774:-|nuORF;ENSG00000214114|ENST00000397572|MYCBP	ENST00000495043.5_1_1:39330344-39338774:-|nuORF	ENST00000495043.5_1_1:39330344-39338774:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	473.6839904785156	2	473.2844	944.554247	-0.32611	-0.00015434	0.12995	6.1501E-05	-0.19617	-9.2844E-05	473.2844134115351	88.853	0.65954	88.853	88.561	89.221	0					28	12	3	0	0	0	0.010055	1	32594	32594		125.53	29.163	1	8223800			18837	9606	13545	13649	18468	18468					0.07975224728750163
GVLDTLTKV	9	Unmodified	_GVLDTLTKV_					0	0	0		ENST00000495043.5_1_1:39330344-39338774:-|nuORF;ENSG00000214114|ENST00000397572|MYCBP	ENST00000495043.5_1_1:39330344-39338774:-|nuORF	ENST00000495043.5_1_1:39330344-39338774:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	473.6841735839844	2	473.2844	944.554247	-0.48967	-0.00023175	0.14866	7.036E-05	-0.341	-0.00016139	473.28446139874416	87.947	0.55818	88.679	88.367	88.925	0.7318					30	10	4	0	0	0	0.022401	1	33430	33430		99.755	13.423	1	10289000			18838	9606	13545	13649	18469	18469					0.07975224728750163
GVLENIFGV	9	Unmodified	_GVLENIFGV_					0	0	0		ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000197136|Q9H6A9-2|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	MULTI-SECPEP	A375_MHC_IP_R1	1	474.6629943847656	2	474.263468	946.512382	-0.72101	-0.00034195	-0.14543	-6.8971E-05	-0.86643	-0.00041092	474.2633482670281	131.75	0.35449	131.75	131.58	131.93	0					18	6	4	0	0	0	0.027983	1	50800	50800		103.75	25.02	1	72806000			18839	9121	13546	13650	18470	18470					0.036986690402500244
GVLENIFGV	9	Unmodified	_GVLENIFGV_					0	0	0		ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000197136|Q9H6A9-2|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	MULTI-SECPEP	A375_MHC_IP_R2	2	474.66326904296875	2	474.263468	946.512382	-0.53047	-0.00025158	0.41359	0.00019615	-0.11688	-5.543E-05	474.26359835678346	131.53	0.40752	131.72	131.54	131.95	0.18953					18	7	4	0	0	0	0.012104	1	51741	51741		92.491	32.418	1	100360000			18840	9121	13546	13650	18471	18471					0.036986690402500244
GVLGHMLF	8	Unmodified	_GVLGHMLF_					0	0	0		MED24|p.S444F|1|0.13|ENSG00000008838|chr17:40028904-40028904|G/A|missense_variant	MED24|p.S444F|1|0.13|ENSG00000008838|chr17:40028904-40028904|G/A|missense_variant	MED24|p.S444F|1|0.13|ENSG00000008838|chr17:40028904-40028904|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	437.1564025878906	2	437.236199	872.457844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106	1	106.76	106.26	107.26	0.75977								0	0	0	0.16876	1	40078	40078		6.3541	2.4097	1				18841	14370	13547	13651	18472	18472					0.01651378687813576
GVLGIEDYSV	10	Unmodified	_GVLGIEDYSV_					0	0	0		nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2;ENST00000464157.1_1_9:139902696-139903239:-|nuORF	nc|ENSG00000107331|Q9BZC7|ABCA2	nc|ENSG00000107331|Q9BZC7|ABCA2	MULTI-MSMS	A375_MHC_IP_R1	1	526.1950073242188	2	526.268947	1050.52334	-0.011726	-6.171E-06	-2.0368	-0.0010719	-2.0485	-0.0010781	526.2669921883497	48.919	1.0621	48.919	48.223	49.285	0					39	20	3	0	0	0	0.23156	1	17071	17071		46.021	2.1627	1	12823000			18842	2735	13548	13652	18473	18473					0.00010026623840531101
GVLGNALEGV	10	Unmodified	_GVLGNALEGV_					0	0	0		nc|ENSG00000132780|P49321-2|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000464190.6_1_1:46049764-46072280:+|nuORF;nc|ENSG00000132780|P49321-4|NASP	nc|ENSG00000132780|P49321-2|NASP	nc|ENSG00000132780|P49321-2|NASP	MULTI-SECPEP	A375_MHC_IP_R1	1	929.2384643554688	1	928.509822	927.502546	0.021043	1.9539E-05	-0.4661	-0.00043278	-0.44505	-0.00041324	928.509873557855	97.582	0.35481	97.582	97.44	97.794	0					11	6	2	0	0	0	0.79457	1	35911	35911		26.268	5.8145	1	1788200			18843	4447	13549	13653	18474	18474					0.035894810348509054
GVLGNALEGV	10	Unmodified	_GVLGNALEGV_					0	0	0		nc|ENSG00000132780|P49321-2|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000464190.6_1_1:46049764-46072280:+|nuORF;nc|ENSG00000132780|P49321-4|NASP	nc|ENSG00000132780|P49321-2|NASP	nc|ENSG00000132780|P49321-2|NASP	MULTI-SECPEP	A375_MHC_IP_R2	2	465.1583251953125	2	464.758549	927.502546	-0.73313	-0.00034073	-0.081157	-3.7718E-05	-0.81429	-0.00037845	464.7585557282986	96.723	0.55482	97.479	97.115	97.67	0.75586					16	10	2	0	0	0	0.73628	1	36702	36702		21.747	3.6117	1	1574800			18844	4447	13549	13653	18475	18475					0.035894810348509054
GVLGNALEGV	10	Unmodified	_GVLGNALEGV_					0	0	0		nc|ENSG00000132780|P49321-2|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000464190.6_1_1:46049764-46072280:+|nuORF;nc|ENSG00000132780|P49321-4|NASP	nc|ENSG00000132780|P49321-2|NASP	nc|ENSG00000132780|P49321-2|NASP	MULTI-MATCH	A375_MHC_IP_R1	1		2	464.758549	927.502546	-0.15265	-7.0946E-05	0.12477	5.7986E-05	-0.027884	-1.2959E-05	464.7584461539438	97.65	0.55688	97.65	97.238	97.794	0	0.085666	0.00011716	NaN	21.747	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1056300			18845	4447	13549	13653							0.035894810348509054
GVLGRDLY	8	Unmodified	_GVLGRDLY_					0	0	0		ENST00000505604.1_1_5:112437417-112440086:-|nuORF;ENST00000502648.5_1_5:112437417-112458501:-|nuORF;nc|ENSG00000171444|P23508|MCC;ENSG00000171444|ENST00000408903|MCC	ENST00000505604.1_1_5:112437417-112440086:-|nuORF	ENST00000505604.1_1_5:112437417-112440086:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	447.14788818359375	2	446.747985	891.481417	-0.6192	-0.00027663	-0.28545	-0.00012753	-0.90465	-0.00040415	446.7478468889448	57.948	0.60619	58.697	58.477	59.083	0.74894					25	11	3	0	0	0	0.92636	1	21915	21915		23.148	3.7094	1	3786300			18846	7599	13550	13654	18476	18476					0.03133515725983216
GVLGRGKMP	9	Unmodified	_GVLGRGKMP_					0	0	0			REV__ENSG00000078246|ENST00000448120|TULP3	REV__ENSG00000078246|ENST00000448120|TULP3	MULTI-MSMS	A375_MHC_IP_R2	2	457.6639099121094	2	457.765655	913.516756	-0.35802	-0.00016389	0.52138	0.00023867	0.16336	7.478E-05	457.76588867829906	106.22	1.5759	106.98	106.68	108.26	0.75977					44	30	2	0	0	0	0.72507	1	40513	40513		4.756	2.6963	1	1817000	+		18847	16708	13551	13655	18477	18477					0.056538549821539164
GVLGRRGQ	8	Unmodified	_GVLGRRGQ_					0	0	0		ENST00000540583.5_1_12:12878851-12879297:+|nuORF	ENST00000540583.5_1_12:12878851-12879297:+|nuORF	ENST00000540583.5_1_12:12878851-12879297:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	422.15106201171875	2	421.751393	841.488233	0.010056	4.2411E-06	-0.085331	-3.5989E-05	-0.075276	-3.1748E-05	421.7512839165507	99.654	0.90968	99.654	99.268	100.18	0					25	17	2	0	0	0	0.77702	1	36580	36580		5.7604	1.0044	1	2609500			18848	13272	13552	13656	18478	18478					0.061148733972345326
GVLHRGGQ	8	Unmodified	_GVLHRGGQ_					0	0	0		ENST00000545396.5_1_12:123463599-123463890:+|nuORF;nc|ENSG00000111325|Q6N063-4|OGFOD2;nc|ENSG00000111325|Q6N063-2|OGFOD2;ENSG00000111325|ENST00000228922|OGFOD2	ENST00000545396.5_1_12:123463599-123463890:+|nuORF	ENST00000545396.5_1_12:123463599-123463890:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	823.02783203125	1	823.453311	822.446034	-0.32865	-0.00027063	0.41516	0.00034187	0.086508	7.1236E-05	823.4534666881865	104.11	2.59	104.11	103.22	105.81	0					87	50	2	0	0	0	0.7779	1	38253	38253		2.5775	0	1	5214300			18849	2984	13553	13657	18479	18479					0.027708979888643626
GVLILLNRRLY	11	Unmodified	_GVLILLNRRLY_					0	0	0			REV__ENSG00000203933|ENST00000370540|CXorf66	REV__ENSG00000203933|ENST00000370540|CXorf66	MSMS	A375_MHC_IP_R1	1	665.8558349609375	2	665.421897	1328.82924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.6	1	100.6	100.1	101.1	0								0	0	0	0.16297	1	36978	36978		3.2813	1.7994	1		+		18850	22477	13554	13658	18480	18480					0.17797881927594972
GVLKNVPSIY	10	Unmodified	_GVLKNVPSIY_					0	0	0			REV__nc|ENSG00000105778|Q8NBF6-2|AVL9	REV__nc|ENSG00000105778|Q8NBF6-2|AVL9	MULTI-MSMS	A375_MHC_IP_R1	1	545.718505859375	2	545.318774	1088.623	-0.40476	-0.00022072	0.4258	0.0002322	0.021044	1.1476E-05	545.3188329816394	111.25	0.71706	111.25	110.8	111.52	0					31	13	3	0	0	0	0.13478	1	40742	40742		56.177	10.437	1	5288000	+		18851	17409	13555	13659	18481	18481					0.08222889028479585
GVLKNVPSIY	10	Unmodified	_GVLKNVPSIY_					0	0	0			REV__nc|ENSG00000105778|Q8NBF6-2|AVL9	REV__nc|ENSG00000105778|Q8NBF6-2|AVL9	MULTI-SECPEP	A375_MHC_IP_R2	2	545.7188720703125	2	545.318774	1088.623	-0.64326	-0.00035078	0.42007	0.00022907	-0.22318	-0.00012171	545.318977935467	110.36	0.76705	111.1	110.68	111.45	0.73692					26	14	3	0	0	0	0.47386	1	41622	41622		47.749	7.5095	1	3494600	+		18852	17409	13555	13659	18482	18482					0.08222889028479585
GVLKNVPSIY	10	Unmodified	_GVLKNVPSIY_					0	0	0			REV__nc|ENSG00000105778|Q8NBF6-2|AVL9	REV__nc|ENSG00000105778|Q8NBF6-2|AVL9	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	545.318774	1088.623	-0.40476	-0.00022072	0.4258	0.0002322	0.021044	1.1476E-05	545.3188329816394	111.25	0.71706	111.25	110.8	111.52	0	0.078847	2.684E-06	NaN	56.177	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5288000	+		18853	17409	13555	13659							0.08222889028479585
GVLLIILIVL	10	Unmodified	_GVLLIILIVL_					0	0	0		ENSG00000168899|ENST00000306384|VAMP5	ENSG00000168899|ENST00000306384|VAMP5	ENSG00000168899|ENST00000306384|VAMP5	MSMS	A375_MHC_IP_R1	1	533.449951171875	2	533.385929	1064.7573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.92	1	21.92	21.42	22.42	0								0	0	0	0.15628	1	5827	5827		0.45834	0	1				18854	7355	13556	13660	18483	18483					0.22751574521180373
GVLLPKLVLL	10	Unmodified	_GVLLPKLVLL_					0	0	0		nc|ENSG00000166265|Q96J86-6|CYYR1;nc|ENSG00000166265|Q96J86-5|CYYR1;nc|ENSG00000166265|Q96J86-4|CYYR1;nc|ENSG00000166265|Q96J86-3|CYYR1;nc|ENSG00000166265|Q96J86|CYYR1;ENSG00000166265|ENST00000652641|CYYR1	nc|ENSG00000166265|Q96J86-6|CYYR1	nc|ENSG00000166265|Q96J86-6|CYYR1	MSMS	A375_MHC_IP_R1	1	532.82568359375	2	532.875728	1063.7369	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.045	1	83.045	82.545	83.545	0								0	0	0	0.15628	1	30379	30379		0.45834	0	1				18855	7053	13557	13661	18484	18484					0.20758403861373154
GVLLSCLGLYL	11	Unmodified	_GVLLSCLGLYL_					0	0	0			REV__ENSG00000174456|ENST00000615315|C12orf76	REV__ENSG00000174456|ENST00000615315|C12orf76	MULTI-MSMS	A375_MHC_IP_R1	1	384.2865905761719	3	384.222866	1149.64677	0.37778	0.00014515	0.092002	3.5349E-05	0.46979	0.0001805	384.22280225097194	37.278	1.4293	37.278	37.045	38.475	0					42	27	3	0	0	0	0.73404	1	12904	12904		5.0475	0.3316	1	19510000	+		18856	21285	13558	13662	18485	18485					0.07792986470644792
GVLLVSASSW	10	Unmodified	_GVLLVSASSW_					0	0	0		ENST00000530702.1_2_11:10827460-10828835:-|nuORF	ENST00000530702.1_2_11:10827460-10828835:-|nuORF	ENST00000530702.1_2_11:10827460-10828835:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	510.1634216308594	2	509.782025	1017.5495	-0.46481	-0.00023695	0.66433	0.00033866	0.19953	0.00010171	509.78242238689165	50.425	0.56271	50.425	49.998	50.561	0					16	10	2	0	0	0	0.76414	1	17904	17904		14.838	4.0143	1	2097900			18857	13153	13559	13663	18486	18486					0.04142340585997317
GVLPFVRGV	9	Unmodified	_GVLPFVRGV_					0	0	0		FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000584444.5_1_17:18156710-18162004:-|nuORF;ENST00000478416.1_1_17:18157237-18162004:-|nuORF;ENST00000582626.1_1_17:18160183-18162004:-|nuORF	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	472.6902770996094	2	472.28982	942.565087	-0.48244	-0.00022785	1.1735	0.00055423	0.69106	0.00032638	472.2904218310913	91.606	1.2143	92.341	91.566	92.78	0.7345					38	23	3	0	0	0	0.65246	1	34812	34812		21.747	3.6117	1	2251000			18858	8107	13560	13664	18487	18487					0.0915067189371257
GVLPFVRGV	9	Unmodified	_GVLPFVRGV_					0	0	0		FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000584444.5_1_17:18156710-18162004:-|nuORF;ENST00000478416.1_1_17:18157237-18162004:-|nuORF;ENST00000582626.1_1_17:18160183-18162004:-|nuORF	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	472.28982	942.565087	-0.21625	-0.00010213	0.95485	0.00045097	0.7386	0.00034883	472.29032905619556	92.388	0.96399	92.388	92.059	93.023	0	0.023566	-6.7966E-05	NaN	21.747	30	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2415600			18859	8107	13560	13664							0.0915067189371257
GVLPNIQAV	9	Unmodified	_GVLPNIQAV_					0	0	0		nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000274997|ENST00000377459|H2AC12;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000180573|ENST00000377791|H2AC6;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000188486|ENST00000530167|H2AX;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000184270|ENST00000331128|H2AC21	nc|ENSG00000288859|Q6FI13|H2AC18	nc|ENSG00000288859|Q6FI13|H2AC18	MULTI-MSMS	A375_MHC_IP_R1	1	456.1712951660156	2	455.77146	909.528367	-0.25182	-0.00011477	0.054677	2.492E-05	-0.19714	-8.9851E-05	455.77144399145385	99.296	0.70939	99.296	98.914	99.624	0					40	13	4	0	0	0	0.0070665	1	36417	36417		131.3	56.875	1	15148000			18860	8566	13561	13665	18488	18488					0.06998375277123614
GVLPNIQAV	9	Unmodified	_GVLPNIQAV_					0	0	0		nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000274997|ENST00000377459|H2AC12;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000180573|ENST00000377791|H2AC6;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000188486|ENST00000530167|H2AX;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000184270|ENST00000331128|H2AC21	nc|ENSG00000288859|Q6FI13|H2AC18	nc|ENSG00000288859|Q6FI13|H2AC18	MULTI-SECPEP	A375_MHC_IP_R1	1	910.34423828125	1	910.535643	909.528367	-0.13586	-0.00012371	-0.1623	-0.00014778	-0.29816	-0.00027149	910.5355430871386	99.293	0.65926	99.293	98.964	99.624	0					34	12	4	0	0	0	0.040439	1	36595	36595		71.134	40.497	1	29572000			18861	8566	13561	13665	18489	18489					0.06998375277123614
GVLPNIQAV	9	Unmodified	_GVLPNIQAV_					0	0	0		nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000274997|ENST00000377459|H2AC12;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000180573|ENST00000377791|H2AC6;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000188486|ENST00000530167|H2AX;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000184270|ENST00000331128|H2AC21	nc|ENSG00000288859|Q6FI13|H2AC18	nc|ENSG00000288859|Q6FI13|H2AC18	MULTI-SECPEP	A375_MHC_IP_R2	2	456.1714782714844	2	455.77146	909.528367	-0.18865	-8.598E-05	0.0020977	9.5605E-07	-0.18655	-8.5024E-05	455.7714162058632	98.466	0.81319	99.226	98.844	99.657	0.75977					37	15	4	0	0	0	0.010819	1	37300	37300		146.01	71.585	1	16715000			18862	8566	13561	13665	18490	18490					0.06998375277123614
GVLPNIQAV	9	Unmodified	_GVLPNIQAV_					0	0	0		nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000274997|ENST00000377459|H2AC12;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000180573|ENST00000377791|H2AC6;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000188486|ENST00000530167|H2AX;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000184270|ENST00000331128|H2AC21	nc|ENSG00000288859|Q6FI13|H2AC18	nc|ENSG00000288859|Q6FI13|H2AC18	MULTI-SECPEP	A375_MHC_IP_R2	2	910.845703125	1	910.535643	909.528367	-0.33797	-0.00030774	0.03245	2.9547E-05	-0.30552	-0.00027819	910.5356089344483	98.467	0.71169	99.227	98.895	99.606	0.75977					30	13	3	0	0	0	0.096726	1	37490	37490		71.134	33.16	1	21073000			18863	8566	13561	13665	18491	18491					0.06998375277123614
GVLQHLLRPL	10	Unmodified	_GVLQHLLRPL_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.E14103K|1|0.27|ENSG00000181143|chr19:8866083-8866083|C/T|missense_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	A375_MHC_IP_R2	2	573.7606201171875	2	573.361308	1144.70806	-0.56189	-0.00032216	-0.37796	-0.00021671	-0.93984	-0.00053887	573.3610240512463	61.639	0.55427	62.384	62.121	62.675	0.74503					24	10	3	0	0	0	0.92389	1	23330	23330		11.64	0.81637	1	5298600			18864	8335	13562	13666	18492	18492					0.14149679284946615
GVLRHLASLL	10	Unmodified	_GVLRHLASLL_					0	0	0			REV__ENST00000461149.1_1_9:35078119-35078602:-|nuORF	REV__ENST00000461149.1_1_9:35078119-35078602:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	360.2619934082031	3	360.229231	1077.66586	-0.6396	-0.0002304	-0.18005	-6.4858E-05	-0.81965	-0.00029526	360.2292214461757	28.407	4.1444	29.086	28.858	33.003	0.67857					130	81	2	0	0	0	0.70329	1	9723	9723		6.1918	1.663	1	1508799999.9999998	+		18865	22688	13563	13667	18493	18493					0.13013703876549698
GVLRRKVP	8	Unmodified	_GVLRRKVP_					0	0	0		ENST00000327619.9_1_20:45816714-45817023:+|nuORF	ENST00000327619.9_1_20:45816714-45817023:+|nuORF	ENST00000327619.9_1_20:45816714-45817023:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	924.7061157226562	1	924.610146	923.602869	-0.19622	-0.00018143	3.639	0.0033647	3.4428	0.0031832	924.6140130976315	117.98	0.50536	118.59	118.49	119	0.60909					13	9	2	0	0	0	0.77781	1	44843	44843		2.8892	0.58649	1	12771000			18866	10742	13564	13668	18494	18494					0.13801182879183216
GVLSPILTRL	10	Unmodified	_GVLSPILTRL_					0	0	0		ENSG00000106484|ENST00000223215|MEST;nc|ENSG00000106484|Q5EB52-3|MEST;nc|ENSG00000106484|Q5EB52-2|MEST;ENST00000488093.1_1_7:130138236-130140374:+|nuORF	ENSG00000106484|ENST00000223215|MEST	ENSG00000106484|ENST00000223215|MEST	MULTI-MSMS	A375_MHC_IP_R2	2	357.2972106933594	3	356.89737	1067.67028	-0.60864	-0.00021722	0.57196	0.00020413	-0.036679	-1.3091E-05	356.89736257816946	57.149	0.55972	57.899	57.561	58.121	0.75015					20	10	3	0	0	0	0.71267	1	21655	21655		6.6235	2.7471	1	2352300			18867	2695	13565	13669	18495	18495					0.1391516829946795
GVLSVGIV	8	Unmodified	_GVLSVGIV_					0	0	0		nc|ENSG00000137216|Q5T3F8-2|TMEM63B;ENST00000534326.5_1_6:44102273-44116742:+|nuORF;nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B;ENST00000525294.5_1_6:44102412-44108244:+|nuORF	nc|ENSG00000137216|Q5T3F8-2|TMEM63B	nc|ENSG00000137216|Q5T3F8-2|TMEM63B	MSMS	A375_MHC_IP_R1	1	372.2782897949219	2	372.236722	742.45889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.573	1	66.573	66.073	67.073	0								0	0	0	0.16876	1	24110	24110		5.2307	0	1				18868	4870	13566	13670	18496	18496					0.07735916328397252
GVLTALTGV	9	Unmodified	_GVLTALTGV_					0	0	0		ENSG00000103429|ENST00000261658|BFAR;BFAR|p.S146F|1|0.46|ENSG00000103429|chr16:14648561-14648561|C/T|missense_variant	ENSG00000103429|ENST00000261658|BFAR	ENSG00000103429|ENST00000261658|BFAR	MULTI-SECPEP	A375_MHC_IP_R1	1	830.2286376953125	1	830.498195	829.490919	-0.33065	-0.00027461	-0.014959	-1.2423E-05	-0.34561	-0.00028703	830.497976941625	100.64	0.70972	100.64	100.38	101.09	0					22	13	2	0	0	0	0.73363	1	36916	36916		15.847	0	1	4912100			18869	2451	13567	13671	18497	18497					0.06935284011524345
GVLTHLDSFK	10	Unmodified	_GVLTHLDSFK_					0	0	0		ENSG00000165733|ENST00000374518|BMS1;BMS1|p.M180I|1|0.27|ENSG00000165733|chr10:42790415-42790415|G/A|missense_variant;ENST00000445221.1_10:46754714-46754831:-|nuORF;ENST00000456732.2_10:48190054-48195746:+|nuORF;nc|ENSG00000204172|Q5VTM2|AGAP9	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	A375_MHC_IP_R1	1	559.2056274414062	2	558.806031	1115.59751	-0.41241	-0.00023045	-0.15043	-8.406E-05	-0.56283	-0.00031451	558.8060155707054	62.369	0.87159	62.369	61.839	62.711	0					24	16	2	0	0	0	0.6502	1	22554	22554		17.113	1.8644	1	3320100			18870	6988	13568	13672	18498	18498					0.04433414506047484
GVLTIAVRIY	10	Unmodified	_GVLTIAVRIY_					0	0	0		ENSG00000187616|ENST00000339996|MYMK	ENSG00000187616|ENST00000339996|MYMK	ENSG00000187616|ENST00000339996|MYMK	MULTI-MSMS	A375_MHC_IP_R2	2	369.2608337402344	3	368.89737	1103.67028	-0.08299	-3.0615E-05	-0.36467	-0.00013453	-0.44766	-0.00016514	369.2312331434718	21.256	0.45455	21.875	21.525	21.979	0.61932					14	8	2	0	0	0	0.72321	1	6620	6620		1.9064	0.25375	1	1317800			18871	8841	13569	13673	18499	18499					0.12259168299465273
GVLVCKLVKI	10	Unmodified	_GVLVCKLVKI_					0	0	0			REV__ENST00000470408.5_1_7:157015856-157060446:+|nuORF	REV__ENST00000470408.5_1_7:157015856-157060446:+|nuORF	MSMS	A375_MHC_IP_R1	1	357.9309387207031	3	357.903467	1070.68857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.326	1	45.326	44.826	45.826	0								0	0	0	0.15531	1	15855	15855		1.7423	0	1		+		18872	25105	13570	13674	18500	18500					0.15605586949823191
GVLVEIMIGV	10	Unmodified	_GVLVEIMIGV_					0	0	0			REV__CEACAM5|p.G694E|1|0.12|ENSG00000105388|chr19:41727288-41727288|G/A|missense_variant	REV__CEACAM5|p.G694E|1|0.12|ENSG00000105388|chr19:41727288-41727288|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	515.33154296875	2	515.304278	1028.594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.96	1	134.12	133.62	134.62	0.16487								0	0	0	0.15256	1	52698	52698		12.532	1.7076	1		+		18873	15632	13571	13675	18501	18501					0.0808502840784513
GVLVESLSE	9	Unmodified	_GVLVESLSE_					0	0	0		ENSG00000166439|ENST00000299563|RNF169	ENSG00000166439|ENST00000299563|RNF169	ENSG00000166439|ENST00000299563|RNF169	MULTI-MSMS	A375_MHC_IP_R2	2	933.60205078125	1	932.493504	931.486227	-0.1936	-0.00018053	0.07579	7.0673E-05	-0.11781	-0.00010985	932.4934792121172	88.421	0.55649	89.153	88.925	89.482	0.7318					18	10	2	0	0	0	0.75523	1	33562	33562		2.0598	0	1	4500100			18874	7072	13572	13676	18502	18502					0.017743550781119666
GVLVESLSE	9	Unmodified	_GVLVESLSE_					0	0	0		ENSG00000166439|ENST00000299563|RNF169	ENSG00000166439|ENST00000299563|RNF169	ENSG00000166439|ENST00000299563|RNF169	MULTI-MATCH	A375_MHC_IP_R1	1		1	932.493504	931.486227	0.023031	2.1476E-05	-0.34857	-0.00032504	-0.32554	-0.00030357	932.4934431103563	89.18	0.55653	89.18	88.97	89.526	0	0.013718	-0.00023442	NaN	2.0598	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2546500			18875	7072	13572	13676							0.017743550781119666
GVLVKSNKNF	10	Unmodified	_GVLVKSNKNF_					0	0	0			REV__PKHD1L1|p.E1182K|1|0.28|ENSG00000205038|chr8:109436376-109436376|G/A|missense_variant	REV__PKHD1L1|p.E1182K|1|0.28|ENSG00000205038|chr8:109436376-109436376|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	369.2613830566406	3	369.216991	1104.62914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.377	1	21.377	20.877	21.877	0								0	0	0	0.15267	1	5614	5614		12.175	0.68004	1		+		18876	27788	13573	13677	18503	18503					0.08101407260005544
GVLVTTRRRKK	11	Unmodified	_GVLVTTRRRKK_					0	0	0		ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MSMS	A375_MHC_IP_R2	2	657.4957885742188	2	657.428045	1312.84154	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.842	1	22.461	21.961	22.961	0.61932								0	0	0	0.16353	1	6905	6905		0.35063	0	1				18877	8335	13574	13678	18504	18504					0.19762918390620143
GVLVWRRRPRE	11	Unmodified	_GVLVWRRRPRE_					0	0	0		nc|ENSG00000153029|Q95460-2|MR1;ENSG00000153029|ENST00000367580|MR1;ENST00000438435.6_1_1:181006220-181024398:+|nuORF;nc|ENSG00000153029|Q95460-3|MR1	nc|ENSG00000153029|Q95460-2|MR1	nc|ENSG00000153029|Q95460-2|MR1	MSMS	A375_MHC_IP_R1	1	712.490234375	2	712.423294	1422.83203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.19	1	26.19	25.69	26.69	0								0	0	0	0.16358	1	7772	7772		0.35063	0.081612	1				18878	5998	13575	13679	18505	18505					0.1375315010511713
GVLWLLVRR	9	Unmodified	_GVLWLLVRR_					0	0	0			REV__ENSG00000108773|ENST00000225916|KAT2A	REV__ENSG00000108773|ENST00000225916|KAT2A	MULTI-MSMS	A375_MHC_IP_R2	2	371.93255615234375	3	371.241471	1110.70258	-0.30714	-0.00011402	-0.22067	-8.1921E-05	-0.5278	-0.00019594	371.57636791519224	28.902	2.6698	29.6	28.777	31.447	0.69872					185	52	5	0	0	0	0.74477	1	10594	10594		2.9952	2.9952	1	149720000	+		18879	17552	13576	13680	18506	18506					0.15166000493127285
GVLYLYEQG	9	Unmodified	_GVLYLYEQG_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MSMS	A375_MHC_IP_R1	1	521.2505493164062	2	521.266207	1040.51786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.402	1	68.402	67.902	68.902	0								0	0	0	0.15486	1	24799	24799		4.756	0.81161	1				18880	6434	13577	13681	18507	18507					-0.0007765216796542518
GVMAGDIYSV	10	Oxidation (M)	_GVM(Oxidation (M))AGDIYSV_		GVM(1)AGDIYSV		GVM(42)AGDIYSV	0	0	1		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	A375_MHC_IP_R1	1	514.641357421875	2	514.241875	1026.4692	-0.43476	-0.00022357	-0.12205	-6.2764E-05	-0.55681	-0.00028633	514.2416534776348	70.825	0.92079	70.825	70.494	71.415	0					22	17	2	0	0	0	0.27246	1	25713	25713		41.84	18.691	1	3208200			18881	5711	13578	13682	18508	18508		305			-0.0429788879937405
GVMAGDIYSV	10	Oxidation (M)	_GVM(Oxidation (M))AGDIYSV_		GVM(1)AGDIYSV		GVM(55)AGDIYSV	0	0	1		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	A375_MHC_IP_R2	2	514.6412963867188	2	514.241875	1026.4692	-0.69781	-0.00035884	-0.24074	-0.0001238	-0.93854	-0.00048264	514.2416197360601	70.105	0.71106	70.839	70.54	71.251	0.73421					26	13	3	0	0	0	0.14594	1	26581	26581		54.774	25.692	1	2672100			18882	5711	13578	13682	18509	18509		305			-0.0429788879937405
GVMALRFL	8	Unmodified	_GVMALRFL_					0	0	0		ENSG00000092096|ENST00000354772|SLC22A17;nc|ENSG00000092096|Q8WUG5|SLC22A17;ENST00000474057.5_2_14:23817461-23821194:-|nuORF;nc|ENSG00000092096|Q8WUG5-3|SLC22A17;ENST00000557699.5_1_14:23818379-23821759:-|nuORF	ENSG00000092096|ENST00000354772|SLC22A17	ENSG00000092096|ENST00000354772|SLC22A17	MSMS	A375_MHC_IP_R1	1	453.66363525390625	2	453.765123	905.515694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.599	1	61.599	61.099	62.099	0								0	0	0	0.16876	1	22216	22216		5.7604	0	1				18883	1993	13579	13683	18510	18510					0.05915640613238793
GVMCRRRCP	9	Unmodified	_GVMCRRRCP_					0	0	0		ENST00000345990.8_2_5:122848044-122848200:+|nuORF	ENST00000345990.8_2_5:122848044-122848200:+|nuORF	ENST00000345990.8_2_5:122848044-122848200:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	539.7109375	2	539.264973	1076.51539	-1.0187	-0.00054937	-0.70697	-0.00038124	-1.7257	-0.00093061	539.2642255399787	35.853	0.61082	36.616	36.283	36.894	0.76338					23	11	3	0	0	0	0.6898	1	12947	12947		7.9102	2.6795	1	4546600			18884	10910	13580	13684	18511	18511					-0.019804256499128314
GVMESVIAL	9	Oxidation (M)	_GVM(Oxidation (M))ESVIAL_		GVM(1)ESVIAL		GVM(54)ESVIAL	0	0	1		ENSG00000140553|ENST00000418476|UNC45A;nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENST00000554481.1_1_15:91489865-91490237:+|nuORF	ENSG00000140553|ENST00000418476|UNC45A	ENSG00000140553|ENST00000418476|UNC45A	MULTI-MSMS	A375_MHC_IP_R1	1	468.14923095703125	2	467.749336	933.484119	-0.51776	-0.00024218	0.084861	3.9694E-05	-0.4329	-0.00020249	467.7492010446008	90.767	0.81172	90.767	90.539	91.35	0					28	15	2	0	0	0	0.083809	1	33363	33363		53.576	19.473	1	1738900			18885	5168	13581	13685	18512	18512		275			0.014716030686372505
GVMLPHLF	8	Unmodified	_GVMLPHLF_					0	0	0		ENST00000488743.6_1_2:27425876-27434347:-|nuORF;ENST00000461319.5_1_2:27425724-27426164:-|nuORF	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	457.3050537109375	2	457.251849	912.489145	-0.58909	-0.00026936	2.9835	0.0013642	2.3944	0.0010949	457.25335032037447	23.367	0.60804	23.997	23.675	24.283	0.63014					13	11	2	0	0	0	0.77686	1	7575	7575		6.3541	0.59368	1	2516200			18886	12622	13582	13686	18513	18513					0.029399517219189875
GVMPIYLV	8	Unmodified	_GVMPIYLV_					0	0	0			REV__ENSG00000167360|ENST00000300778|OR51Q1	REV__ENSG00000167360|ENST00000300778|OR51Q1	MULTI-SECPEP	A375_MHC_IP_R1	1	446.174560546875	2	446.254057	890.493561	0.00018359	8.1929E-08	-1.4826	-0.00066162	-1.4824	-0.00066154	446.2526487858184	63.198	0.25651	63.198	63.069	63.326	0					6	4	2	0	0	0	0.972	1	22812	22812		2.8892	0	1	572560	+		18887	20751	13583	13687	18514	18514					0.04393416144807816
GVMPPELCW	9	Unmodified	_GVMPPELCW_					0	0	0		GRIN3A|p.R353C|3|0.44|ENSG00000198785|chr9:101686843-101686843|G/A|missense_variant	GRIN3A|p.R353C|3|0.44|ENSG00000198785|chr9:101686843-101686843|G/A|missense_variant	GRIN3A|p.R353C|3|0.44|ENSG00000198785|chr9:101686843-101686843|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	516.2112426757812	2	516.238081	1030.46161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.773	1	50.773	50.273	51.273	0								0	0	0	0.1521	1	18001	18001		18.135	1.9859	1				18888	14086	13584	13688	18515	18515					-0.05240319600648036
GVMVTEGTLY	10	Unmodified	_GVMVTEGTLY_					0	0	0			REV__ENST00000559270.5_2_14:24507775-24520174:+|nuORF	REV__ENST00000559270.5_2_14:24507775-24520174:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	535.6648559570312	2	535.26535	1068.51615	-0.84444	-0.000452	0.54114	0.00028966	-0.30329	-0.00016234	535.2652864332283	94.854	0.4585	94.854	94.651	95.109	0					14	8	2	0	0	0	0.66712	1	34907	34907		15.847	0	1	1368700	+		18889	26154	13585	13689	18516	18516					-0.015370292481975412
GVNEQPPVV	9	Unmodified	_GVNEQPPVV_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.K1434Nfs*14|1|0.29|ENSG00000153207|chr1:246855808-246855809|AC/-|frameshift_variant	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MSMS	A375_MHC_IP_R1	1	470.1507263183594	2	469.750724	937.486896	-0.3455	-0.0001623	0.11054	5.1925E-05	-0.23496	-0.00011037	469.75077095178483	50.23	0.56286	50.23	49.947	50.51	0					22	10	3	0	0	0	0.0086611	1	17794	17794		128.37	39.462	1	4978100			18890	6016	13586	13690	18517	18517					0.01565194517809232
GVNEQPPVV	9	Unmodified	_GVNEQPPVV_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.K1434Nfs*14|1|0.29|ENSG00000153207|chr1:246855808-246855809|AC/-|frameshift_variant	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-SECPEP	A375_MHC_IP_R2	2	470.1503601074219	2	469.750724	937.486896	-0.89458	-0.00042023	1.0195	0.00047892	0.12494	5.8688E-05	469.7510420973881	49.537	0.65863	50.294	49.995	50.653	0.75737					31	12	4	0	0	0	0.011178	1	18584	18584		128.37	43.093	1	5347400			18891	6016	13586	13690	18518	18518					0.01565194517809232
GVNIRPEI	8	Unmodified	_GVNIRPEI_					0	0	0			REV__nc|ENSG00000156030|Q6PJG2|MIDEAS	REV__nc|ENSG00000156030|Q6PJG2|MIDEAS	MULTI-MSMS	A375_MHC_IP_R1	1	449.6609802246094	2	449.261259	896.507966	-0.45382	-0.00020388	0.31938	0.00014349	-0.13444	-6.0398E-05	449.26134249457505	67.39	0.51199	67.39	67.091	67.603	0					13	9	2	0	0	0	0.7479	1	24440	24440		20.871	0	1	1855200	+		18892	19958	13587	13691	18519	18519					0.055572046173210765
GVNRNRKTN	9	Unmodified	_GVNRNRKTN_					0	0	0		nc|ENSG00000186399|I6L899-2|GOLGA8R;nc|ENSG00000206127|A6NCC3-1|GOLGA8O;ENSG00000186399|ENST00000327271|GOLGA8R;ENSG00000232653|ENST00000448387|GOLGA8N;ENSG00000206127|ENST00000509311|GOLGA8O;ENSG00000178115|ENST00000562783|GOLGA8Q	nc|ENSG00000186399|I6L899-2|GOLGA8R	nc|ENSG00000186399|I6L899-2|GOLGA8R	MSMS	A375_MHC_IP_R1	1	353.6130676269531	3	353.531973	1057.57409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.487	1	35.487	34.987	35.987	0								0	0	0	0.15486	1	11806	11806		7.1017	0	1				18893	8135	13588	13692	18520	18520					0.047604135120991486
GVPADEQISPY	11	Unmodified	_GVPADEQISPY_					0	0	0			REV__ENSG00000086570|ENST00000261800|FAT2	REV__ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	A375_MHC_IP_R2	2	587.6731567382812	2	588.282586	1174.55062	-0.75452	-0.00044387	-1.2916	-0.00075982	-2.0461	-0.0012037	588.28162611619	54.629	0.45778	55.38	55.169	55.626	0.75075					15	8	2	0	0	0	0.72869	1	20660	20660		10.151	0.076642	1	2314300	+		18894	16857	13589	13693	18521	18521					-0.029674898357598067
GVPADPDNIY	10	Unmodified	_GVPADPDNIY_					0	0	0		ENSG00000166123|ENST00000340124|GPT2;nc|ENSG00000166123|Q8TD30-2|GPT2	ENSG00000166123|ENST00000340124|GPT2	ENSG00000166123|ENST00000340124|GPT2	MULTI-MSMS	A375_MHC_IP_R1	1	531.2200317382812	2	530.750921	1059.48729	-0.47791	-0.00025365	0.54562	0.00028959	0.067715	3.594E-05	530.750896459377	71.061	0.66537	71.061	70.648	71.313	0					24	12	3	0	0	0	0.70146	1	25693	25693		11.64	0.52583	1	3728200			18895	7024	13590	13694	18522	18522					-0.040074305529969934
GVPATVSEK	9	Unmodified	_GVPATVSEK_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MSMS	A375_MHC_IP_R1	1	444.2652282714844	2	444.245275	886.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.662	1	43.662	43.162	44.162	0								0	0	0	0.15486	1	15192	15192		4.756	0	1				18896	4852	13591	13695	18523	18523					0.02821792143527091
GVPDDLVV	8	Unmodified	_GVPDDLVV_					0	0	0			REV__ENSG00000106665|ENST00000223398|CLIP2	REV__ENSG00000106665|ENST00000223398|CLIP2	MULTI-MSMS	A375_MHC_IP_R1	1	814.6617431640625	1	813.435261	812.427984	-0.74962	-0.00060976	-1.0472	-0.00085181	-1.7968	-0.0014616	813.4343162925302	140.67	0.41318	140.67	140.49	140.91	0					13	7	2	0	0	0	0.7779	1	53986	53986		2.5775	1.7838	1	1678700	+		18897	17460	13592	13696	18524	18524					0.014267182234789288
GVPDDLVV	8	Unmodified	_GVPDDLVV_					0	0	0			REV__ENSG00000106665|ENST00000223398|CLIP2	REV__ENSG00000106665|ENST00000223398|CLIP2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	813.435261	812.427984	-0.74962	-0.00060976	-1.0472	-0.00085181	-1.7968	-0.0014616	813.4343162925302	140.67	0.41318	140.67	140.49	140.91	0	0.048171	7.389E-05	NaN	2.5775	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1678700	+		18898	17460	13592	13696							0.014267182234789288
GVPDDLVV	8	Unmodified	_GVPDDLVV_					0	0	0			REV__ENSG00000106665|ENST00000223398|CLIP2	REV__ENSG00000106665|ENST00000223398|CLIP2	MULTI-MATCH	A375_MHC_IP_R2	2		1	813.435261	812.427984	-0.66476	-0.00054074	-1.2039	-0.00097932	-1.8687	-0.0015201	813.4341547032085	140.54	0.56094	140.58	140.3	140.86	0.04216	-0.048171	-5.3619E-05	NaN	2.5775	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2180100	+		18899	17460	13592	13696							0.014267182234789288
GVPENGYQTLY	11	Unmodified	_GVPENGYQTLY_					0	0	0		nc|ENSG00000174938|Q6UXD5-6|SEZ6L2;nc|ENSG00000174938|Q6UXD5-2|SEZ6L2;nc|ENSG00000174938|Q6UXD5-3|SEZ6L2;nc|ENSG00000174938|Q6UXD5|SEZ6L2;ENSG00000174938|ENST00000617533|SEZ6L2;nc|ENSG00000174938|Q6UXD5-5|SEZ6L2	nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	MULTI-MSMS	A375_MHC_IP_R1	1	621.1956176757812	2	620.79586	1239.57717	-0.23638	-0.00014674	-0.24473	-0.00015193	-0.48111	-0.00029867	620.7957064193254	54.175	0.75984	54.175	53.707	54.467	0					37	14	3	0	0	0	0.36994	1	19256	19256		51.63	3.8811	1	4240200			18900	7914	13593	13697	18525	18525					-0.03303800944399882
GVPENGYQTLY	11	Unmodified	_GVPENGYQTLY_					0	0	0		nc|ENSG00000174938|Q6UXD5-6|SEZ6L2;nc|ENSG00000174938|Q6UXD5-2|SEZ6L2;nc|ENSG00000174938|Q6UXD5-3|SEZ6L2;nc|ENSG00000174938|Q6UXD5|SEZ6L2;ENSG00000174938|ENST00000617533|SEZ6L2;nc|ENSG00000174938|Q6UXD5-5|SEZ6L2	nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	MULTI-MSMS	A375_MHC_IP_R1	1	621.1956787109375	2	620.79586	1239.57717	-0.46295	-0.0002874	0.017572	1.0908E-05	-0.44538	-0.00027649	620.7957697443637	59.155	1.322	59.155	58.075	59.397	0					38	25	3	0	0	0	0.32336	1	21233	21233		63.961	63.961	1	4960800			18901	7914	13593	13697	18526	18526					-0.03303800944399882
GVPENGYQTLY	11	Unmodified	_GVPENGYQTLY_					0	0	0		nc|ENSG00000174938|Q6UXD5-6|SEZ6L2;nc|ENSG00000174938|Q6UXD5-2|SEZ6L2;nc|ENSG00000174938|Q6UXD5-3|SEZ6L2;nc|ENSG00000174938|Q6UXD5|SEZ6L2;ENSG00000174938|ENST00000617533|SEZ6L2;nc|ENSG00000174938|Q6UXD5-5|SEZ6L2	nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	MULTI-SECPEP	A375_MHC_IP_R2	2	621.1952514648438	2	620.79586	1239.57717	-1.0324	-0.00064088	0.19197	0.00011917	-0.84039	-0.00052171	620.7958512548153	58.407	0.66094	59.156	58.779	59.44	0.74894					26	12	3	0	0	0	0.10424	1	22102	22102		72.968	31.128	1	4700100			18902	7914	13593	13697	18527	18527					-0.03303800944399882
GVPENGYQTLY	11	Unmodified	_GVPENGYQTLY_					0	0	0		nc|ENSG00000174938|Q6UXD5-6|SEZ6L2;nc|ENSG00000174938|Q6UXD5-2|SEZ6L2;nc|ENSG00000174938|Q6UXD5-3|SEZ6L2;nc|ENSG00000174938|Q6UXD5|SEZ6L2;ENSG00000174938|ENST00000617533|SEZ6L2;nc|ENSG00000174938|Q6UXD5-5|SEZ6L2	nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	MULTI-SECPEP	A375_MHC_IP_R2	2	621.1957397460938	2	620.79586	1239.57717	-1.2688	-0.00078769	0.6125	0.00038024	-0.65633	-0.00040745	620.7961961942955	53.472	0.92039	54.223	53.688	54.609	0.75105					39	17	3	0	0	0	0.60761	1	20117	20117		43.772	10.987	1	6972300			18903	7914	13593	13697	18528	18528					-0.03303800944399882
GVPENGYQTLY	11	Unmodified	_GVPENGYQTLY_					0	0	0		nc|ENSG00000174938|Q6UXD5-6|SEZ6L2;nc|ENSG00000174938|Q6UXD5-2|SEZ6L2;nc|ENSG00000174938|Q6UXD5-3|SEZ6L2;nc|ENSG00000174938|Q6UXD5|SEZ6L2;ENSG00000174938|ENST00000617533|SEZ6L2;nc|ENSG00000174938|Q6UXD5-5|SEZ6L2	nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	620.79586	1239.57717	-0.46295	-0.0002874	0.017572	1.0908E-05	-0.44538	-0.00027649	620.7957697443637	59.155	1.322	59.155	58.075	59.397	0	-0.00031641	-8.9625E-05	NaN	72.968	38	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4960800			18904	7914	13593	13697							-0.03303800944399882
GVPENGYQTLY	11	Unmodified	_GVPENGYQTLY_					0	0	0		nc|ENSG00000174938|Q6UXD5-6|SEZ6L2;nc|ENSG00000174938|Q6UXD5-2|SEZ6L2;nc|ENSG00000174938|Q6UXD5-3|SEZ6L2;nc|ENSG00000174938|Q6UXD5|SEZ6L2;ENSG00000174938|ENST00000617533|SEZ6L2;nc|ENSG00000174938|Q6UXD5-5|SEZ6L2	nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	620.79586	1239.57717	-0.23638	-0.00014674	-0.24473	-0.00015193	-0.48111	-0.00029867	620.7957064193254	54.175	0.75984	54.175	53.707	54.467	0	-0.024208	-0.00047835	NaN	51.63	37	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4240200			18905	7914	13593	13697							-0.03303800944399882
GVPFAVPL	8	Unmodified	_GVPFAVPL_					0	0	0			REV__ATP13A1|p.G798Afs*55|1|0.25|ENSG00000105726|chr19:19649883-19649883|C/-|frameshift_variant	REV__ATP13A1|p.G798Afs*55|1|0.25|ENSG00000105726|chr19:19649883-19649883|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	400.63848876953125	2	400.239264	798.463976	-0.54865	-0.00021959	-1.0628	-0.00042538	-1.6114	-0.00064497	400.238773506907	135.26	0.35597	135.26	134.98	135.34	0					8	6	2	0	0	0	0.77781	1	52175	52175		2.8892	0	1	3300600	+		18906	15475	13594	13698	18529	18529					0.056682201909779906
GVPFTLTTV	9	Unmodified	_GVPFTLTTV_					0	0	0		ENST00000473911.1_1_9:139890098-139890974:-|nuORF;ENST00000480181.1_1_9:139889560-139890188:-|nuORF;ENSG00000169583|ENST00000494426|CLIC3	ENST00000473911.1_1_9:139890098-139890974:-|nuORF	ENST00000473911.1_1_9:139890098-139890974:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	467.6627197265625	2	467.765843	933.517133	-1.0379	-0.00048549	-1.7875	-0.00083611	-2.8254	-0.0013216	467.7650462517847	56.987	1.4237	57.737	57.356	58.78	0.75015					38	27	2	0	0	0	0.62719	1	21813	21813		13.508	0.97634	1	7510500			18907	7417	13595	13699	18530	18530					0.047715531829908286
GVPGPIPRHY	10	Unmodified	_GVPGPIPRHY_					0	0	0			REV__ENST00000405995.5_1_9:134372150-134372429:+|nuORF	REV__ENST00000405995.5_1_9:134372150-134372429:+|nuORF	MSMS	A375_MHC_IP_R1	1	546.913818359375	2	546.801083	1091.58761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.556	1	83.556	83.056	84.056	0								0	0	0	0.15256	1	30576	30576		12.532	1.7076	1		+		18908	24440	13596	13700	18531	18531					0.04548271291309902
GVPGRASWV	9	Unmodified	_GVPGRASWV_					0	0	0		ENSG00000282936|ENST00000634965|unknown	ENSG00000282936|ENST00000634965|unknown	ENSG00000282936|ENST00000634965|unknown	MSMS	A375_MHC_IP_R2	2	464.65380859375	2	464.753601	927.49265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115	1	115.69	115.19	116.19	0.68999								0	0	0	0.15486	1	43352	43352		7.2892	0.93513	1				18909	10047	13597	13701	18532	18532					0.026003378201380656
GVPGSNSADLL	11	Unmodified	_GVPGSNSADLL_					0	0	0		nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	MULTI-MSMS	A375_MHC_IP_R2	2	516.1651000976562	2	515.264196	1028.51384	-1.0579	-0.0005451	0.40413	0.00020824	-0.65378	-0.00033687	515.2647781562238	58.25	1.2675	58.999	58.375	59.643	0.74894					64	24	4	0	0	0	0.66658	1	21947	21947		18.146	4.2403	1	11547000			18910	5927	13598	13702	18533	18533					0.0007225833833217621
GVPGSWVG	8	Unmodified	_GVPGSWVG_					0	0	0		ENST00000473739.5_1_X:18912213-18919671:-|nuORF	ENST00000473739.5_1_X:18912213-18919671:-|nuORF	ENST00000473739.5_1_X:18912213-18919671:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	380.09539794921875	2	379.695221	757.375889	0.39871	0.00015139	0.12657	4.8058E-05	0.52528	0.00019945	379.6952255769493	101.93	0.60716	101.93	101.55	102.15	0					21	11	2	0	0	0	0.77702	1	37409	37409		5.7604	0	1	2728700			18911	12394	13599	13703	18534	18534					-0.012504003996127722
GVPGSWVG	8	Unmodified	_GVPGSWVG_					0	0	0		ENST00000473739.5_1_X:18912213-18919671:-|nuORF	ENST00000473739.5_1_X:18912213-18919671:-|nuORF	ENST00000473739.5_1_X:18912213-18919671:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	380.0957336425781	2	379.695221	757.375889	0.17456	6.6278E-05	0.71589	0.00027182	0.89045	0.0003381	379.69544010424465	101.17	0.56102	101.93	101.65	102.21	0.76428					19	10	2	0	0	0	0.77702	1	38322	38322		5.7604	0	1	4120800			18912	12394	13599	13703	18535	18535					-0.012504003996127722
GVPHFSGF	8	Unmodified	_GVPHFSGF_					0	0	0			REV__ENST00000471335.5_1_2:72411272-72562392:-|nuORF	REV__ENST00000471335.5_1_2:72411272-72562392:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	424.609130859375	2	424.208495	846.402438	-0.087735	-3.7218E-05	1.0698	0.00045382	0.98206	0.0004166	424.20888582896345	60.092	0.96754	60.092	59.752	60.719	0					34	18	3	0	0	0	0.7758	2	21644	21644;21732		10.183	0	1	2785000	+		18913	25116	13600	13704	18536;18537	18536					-0.026907115082849486
GVPHFSGF	8	Unmodified	_GVPHFSGF_					0	0	0			REV__ENST00000471335.5_1_2:72411272-72562392:-|nuORF	REV__ENST00000471335.5_1_2:72411272-72562392:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	424.208495	846.402438	-0.087735	-3.7218E-05	1.0698	0.00045382	0.98206	0.0004166	424.20888582896345	60.092	0.96754	60.092	59.752	60.719	0	0.095831	0.00032246	NaN	10.183	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2785000	+		18914	25116	13600	13704							-0.026907115082849486
GVPHFSGF	8	Unmodified	_GVPHFSGF_					0	0	0			REV__ENST00000471335.5_1_2:72411272-72562392:-|nuORF	REV__ENST00000471335.5_1_2:72411272-72562392:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	424.208495	846.402438	-0.55429	-0.00023513	0.38982	0.00016537	-0.16447	-6.9768E-05	424.20873070018797	59.153	1.1137	59.9	59.54	60.653	0.74714	-0.095831	-0.00025444	NaN	10.183	32	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3104500	+		18915	25116	13600	13704							-0.026907115082849486
GVPLAEVPHTP	11	Unmodified	_GVPLAEVPHTP_					0	0	0			REV__ENSG00000115112|ENST00000263707|TFCP2L1	REV__ENSG00000115112|ENST00000263707|TFCP2L1	MULTI-SECPEP	A375_MHC_IP_R1	1	558.6338500976562	2	558.806031	1115.59751	-0.59101	-0.00033026	0.050675	2.8318E-05	-0.54034	-0.00030194	558.806382891054	53.153	2.0285	53.153	52.438	54.467	0					60	39	2	0	0	0	0.93746	1	18968	18968		22.736	13.991	1	7478400	+		18916	17856	13601	13705	18538	18538					0.04433414506047484
GVPLAEVPHTP	11	Unmodified	_GVPLAEVPHTP_					0	0	0			REV__ENSG00000115112|ENST00000263707|TFCP2L1	REV__ENSG00000115112|ENST00000263707|TFCP2L1	MULTI-SECPEP	A375_MHC_IP_R2	2	559.2052612304688	2	558.806031	1115.59751	-1.024	-0.00057222	-0.018497	-1.0336E-05	-1.0425	-0.00058255	558.8059961573938	61.6	1.0578	62.345	61.668	62.726	0.74503					31	20	2	0	0	0	0.98069	1	23332	23332		30.637	16.73	1	3346200	+		18917	17856	13601	13705	18539	18539					0.04433414506047484
GVPLAEVPHTP	11	Unmodified	_GVPLAEVPHTP_					0	0	0			REV__ENSG00000115112|ENST00000263707|TFCP2L1	REV__ENSG00000115112|ENST00000263707|TFCP2L1	MULTI-SECPEP	A375_MHC_IP_R2	2	559.2056884765625	2	558.806031	1115.59751	-1.1087	-0.00061954	-0.15133	-8.4562E-05	-1.26	-0.0007041	558.8061581918167	52.448	1.318	53.2	52.372	53.69	0.75225					64	25	3	0	0	0	0.93746	1	19814	19814		29.082	29.082	1	9798000	+		18918	17856	13601	13705	18540	18540					0.04433414506047484
GVPLRLLTPLH	11	Unmodified	_GVPLRLLTPLH_					0	0	0		ENST00000588720.1_1_17:59465842-59466070:+|nuORF	ENST00000588720.1_1_17:59465842-59466070:+|nuORF	ENST00000588720.1_1_17:59465842-59466070:+|nuORF	MSMS	A375_MHC_IP_R1	1	608.7831420898438	2	608.38224	1214.74993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.62	1	108.62	108.12	109.12	0								0	0	0	0.16297	1	39847	39847		3.2813	1.6287	1				18919	13767	13602	13706	18541	18541					0.15114234973452767
GVPNPPTH	8	Unmodified	_GVPNPPTH_					0	0	0		nc|ENSG00000160321|O43345-2|ZNF208	nc|ENSG00000160321|O43345-2|ZNF208	nc|ENSG00000160321|O43345-2|ZNF208	MULTI-SECPEP	A375_MHC_IP_R2	2	818.7357177734375	1	818.415528	817.408252	-0.63723	-0.00052152	-2.2127	-0.0018109	-2.8499	-0.0023324	818.4140884292752	114.7	2.2831	115.39	114	116.29	0.68999					69	44	2	0	0	0	0.96266	1	42869	42869		11.64	0	1	52399000			18920	14711	13603	13707	18542	18542					-0.0077561299663102545
GVPPGFGK	8	Unmodified	_GVPPGFGK_					0	0	0		ENSG00000132837|ENST00000255189|DMGDH;ENST00000518477.5_1_5:78317432-78365396:-|nuORF	ENSG00000132837|ENST00000255189|DMGDH	ENSG00000132837|ENST00000255189|DMGDH	MULTI-MSMS	A375_MHC_IP_R1	1	380.113525390625	2	379.713414	757.412274	0.18715	7.1063E-05	0.72795	0.00027641	0.9151	0.00034748	379.7135641782871	94.884	0.6624	94.884	94.497	95.16	0					24	12	3	0	0	0	0.77781	1	34845	34845		2.8892	0	1	2592200			18921	4455	13604	13708	18543	18543					0.023864764970994656
GVPPGFGK	8	Unmodified	_GVPPGFGK_					0	0	0		ENSG00000132837|ENST00000255189|DMGDH;ENST00000518477.5_1_5:78317432-78365396:-|nuORF	ENSG00000132837|ENST00000255189|DMGDH	ENSG00000132837|ENST00000255189|DMGDH	MULTI-SECPEP	A375_MHC_IP_R1	1	379.16217041015625	2	379.713414	757.412274	0.29766	0.00011302	0.61327	0.00023287	0.91093	0.00034589	379.71348743083064	95.742	0.50341	95.742	95.515	96.018	0					14	9	2	0	0	0	0.972	1	35113	35113		0.79363	0	1	1618000			18922	4455	13604	13708	18544	18544					0.023864764970994656
GVPPGFGK	8	Unmodified	_GVPPGFGK_					0	0	0		ENSG00000132837|ENST00000255189|DMGDH;ENST00000518477.5_1_5:78317432-78365396:-|nuORF	ENSG00000132837|ENST00000255189|DMGDH	ENSG00000132837|ENST00000255189|DMGDH	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	379.713414	757.412274	0.23568	8.9489E-05	0.55783	0.00021182	0.79351	0.00030131	379.71350745085397	94.048	0.55696	94.793	94.463	95.02	0.74474	-0.045465	-8.2757E-05	NaN	2.8892	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2740700			18923	4455	13604	13708							0.023864764970994656
GVPRGVHLRS	10	Unmodified	_GVPRGVHLRS_					0	0	0		nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR	nc|ENSG00000160710|P55265-3|ADAR	nc|ENSG00000160710|P55265-3|ADAR	MULTI-MSMS	A375_MHC_IP_R2	2	1077.7548828125	1	1077.62759	1076.62031	0.088345	9.5203E-05	-2.5523	-0.0027505	-2.464	-0.0026553	1077.6283507621406	123.4	1.2144	123.77	123.02	124.24	0.3766					45	23	3	0	0	0	0.71245	1	47140	47140		6.7232	1.4925	1	46632000			18924	6435	13605	13709	18545	18545					0.08506478414165031
GVPRGVHLRS	10	Unmodified	_GVPRGVHLRS_					0	0	0		nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR	nc|ENSG00000160710|P55265-3|ADAR	nc|ENSG00000160710|P55265-3|ADAR	MULTI-MATCH	A375_MHC_IP_R1	1		1	1077.62759	1076.62031	-0.48037	-0.00051766	-0.88867	-0.00095765	-1.369	-0.0014753	1077.6298066453821	123.79	0.90731	123.79	123.18	124.09	0	0.0081247	0.0013488	NaN	6.7232	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63009000			18925	6435	13605	13709							0.08506478414165031
GVPRPGRS	8	Unmodified	_GVPRPGRS_					0	0	0			REV__ENST00000484090.1_1_21:40684667-40685223:-|nuORF	REV__ENST00000484090.1_1_21:40684667-40685223:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	413.6383056640625	2	413.238119	824.461684	0.11267	4.6559E-05	0.34606	0.000143	0.45873	0.00018956	413.23824451974855	96.194	1.5275	96.945	95.735	97.262	0.75044					49	29	2	0	0	0	0.77702	1	36546	36546		5.7604	0	1	1846600	+		18926	25296	13606	13710	18546	18546					0.04243184505901354
GVPSAKVW	8	Unmodified	_GVPSAKVW_					0	0	0			REV__nc|ENSG00000108788|Q9UH92|MLX	REV__nc|ENSG00000108788|Q9UH92|MLX	MULTI-MSMS	A375_MHC_IP_R1	1	422.6398620605469	2	422.239796	842.465038	0.10676	4.5078E-05	-1.0553	-0.0004456	-0.94858	-0.00040053	422.2393413385205	42.474	1.0112	42.474	41.88	42.891	0					29	19	3	0	0	0	0.7338	1	14653	14653		24.674	1.5255	1	3883500	+		18927	27165	13607	13711	18547	18547					0.037504345598904365
GVPSRRPCP	9	Unmodified	_GVPSRRPCP_					0	0	0			REV__ENST00000417788.5_1_22:22049720-22049885:+|nuORF	REV__ENST00000417788.5_1_22:22049720-22049885:+|nuORF	MSMS	A375_MHC_IP_R1	1	484.6546630859375	2	484.758361	967.502169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.403	1	23.403	22.903	23.903	0								0	0	0	0.15486	1	6417	6417		8.5933	2.3875	1		+		18928	24548	13608	13712	18548	18548					0.017117828340019514
GVPTTNIIIDG	11	Unmodified	_GVPTTNIIIDG_					0	0	0			REV__tr|U7T0G8|U7T0G8_FUSNUShikimatedehydrogenase(NADP(+))OS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroEPE=3SV=1	REV__tr|U7T0G8|U7T0G8_FUSNUShikimatedehydrogenase(NADP(+))OS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroEPE=3SV=1	MSMS	A375_MHC_IP_R2	2	550.6338500976562	2	550.303321	1098.59209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.69	1	122.14	121.64	122.64	0.44488								0	0	0	0.15837	1	46576	46576		15.248	1.3424	1		+		18929	28678	13609	13713	18549	18549					0.04673690923573304
GVPVAHPA	8	Unmodified	_GVPVAHPA_					0	0	0		ENST00000223023.4_1_7:123349191-123389113:-|nuORF	ENST00000223023.4_1_7:123349191-123389113:-|nuORF	ENST00000223023.4_1_7:123349191-123389113:-|nuORF	MSMS	A375_MHC_IP_R1	1	374.2647705078125	2	374.211038	746.407523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.385	1	19.385	18.885	19.885	0								0	0	0	0.16876	1	4777	4777		6.3541	0	1				18930	10115	13610	13714	18550	18550					0.02417592354311182
GVQDFVPFV	9	Unmodified	_GVQDFVPFV_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	MULTI-MSMS	A375_MHC_IP_R1	1	504.66326904296875	2	504.263468	1006.51238	-0.55407	-0.0002794	0.21416	0.00010799	-0.33991	-0.0001714	504.2636148275099	129.47	0.25301	129.47	129.3	129.55	0					10	4	3	0	0	0	0.19747	1	49826	49826		38.176	9.094	1	11694000			18931	7316	13611	13715	18551	18551					0.009386690402379827
GVQDFVPFV	9	Unmodified	_GVQDFVPFV_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	MULTI-MSMS	A375_MHC_IP_R2	2	504.6625671386719	2	504.263468	1006.51238	-0.72418	-0.00036518	-0.12853	-6.4814E-05	-0.85271	-0.00042999	504.2633960424852	129.25	0.30301	129.49	129.31	129.62	0.23946					12	5	3	0	0	0	0.010171	1	50800	50800		96.111	34.753	1	13889000			18932	7316	13611	13715	18552	18552					0.009386690402379827
GVQDFVPFV	9	Unmodified	_GVQDFVPFV_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	504.263468	1006.51238	-0.55407	-0.0002794	0.21416	0.00010799	-0.33991	-0.0001714	504.2636148275099	129.47	0.25301	129.47	129.3	129.55	0	-0.0082492	0.00010388	NaN	96.111	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11694000			18933	7316	13611	13715							0.009386690402379827
GVQEEKVKN	9	Unmodified	_GVQEEKVKN_					0	0	0		nc|ENSG00000187790|Q8IYD8-3|FANCM;ENSG00000187790|ENST00000267430|FANCM;FANCM|p.E1218K|1|0.27|ENSG00000187790|chr14:45176406-45176406|G/A|missense_variant	nc|ENSG00000187790|Q8IYD8-3|FANCM	nc|ENSG00000187790|Q8IYD8-3|FANCM	MSMS	A375_MHC_IP_R1	1	515.6923217773438	2	515.780013	1029.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.263	1	30.263	29.763	30.763	0								0	0	0	0.15069	1	9593	9593		20.454	2.3073	1				18934	8857	13612	13716	18553	18553					0.03188251092274186
GVQEGSDGR	9	Unmodified	_GVQEGSDGR_					0	0	0			REV__ENSG00000143217|ENST00000368012|NECTIN4	REV__ENSG00000143217|ENST00000368012|NECTIN4	MSMS	A375_MHC_IP_R1	1	452.61248779296875	2	452.709588	903.404623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.43	1	36.43	35.93	36.93	0								0	0	0	0.15486	1	12194	12194		7.9102	0.62092	1		+		18935	19341	13613	13717	18554	18554					-0.05094327561141654
GVQEWQDGCM	10	Unmodified	_GVQEWQDGCM_					0	0	0		nc|ENSG00000144504|Q9P2S6-2|ANKMY1;ENSG00000144504|ENST00000401804|ANKMY1;ENST00000464991.5_1_2:241492231-241494423:-|nuORF;nc|ENSG00000144504|Q9P2S6-3|ANKMY1	nc|ENSG00000144504|Q9P2S6-2|ANKMY1	nc|ENSG00000144504|Q9P2S6-2|ANKMY1	MSMS	A375_MHC_IP_R2	2	576.6719360351562	2	576.726066	1151.43758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.385	1	93.124	92.624	93.624	0.73902								0	0	0	0.15353	1	35135	35135		9.3831	3.6227	1				18936	5490	13614	13718	18555	18555					-0.13208204824945824
GVQFGAGI	8	Unmodified	_GVQFGAGI_					0	0	0		ENSG00000100347|ENST00000350028|SAMM50;ENST00000474323.5_1_22:44371844-44392260:+|nuORF	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-SECPEP	A375_MHC_IP_R1	1	374.6172180175781	2	374.703046	747.391539	0.33338	0.00012492	0.74536	0.00027929	1.0787	0.0004042	374.7031854119763	60.243	1.0685	60.243	59.803	60.871	0					30	20	2	0	0	0	0.972	1	21537	21537		2.8892	0	1	1264300			18937	2164	13615	13719	18556	18556					0.0077388611744027
GVQIQGPGIY	10	Unmodified	_GVQIQGPGIY_					0	0	0			REV__nc|ENSG00000137809|Q9UKX5-2|ITGA11	REV__nc|ENSG00000137809|Q9UKX5-2|ITGA11	MSMS	A375_MHC_IP_R1	1	516.19287109375	2	516.279649	1030.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.596	1	27.596	27.096	28.096	0								0	0	0	0.14793	1	8394	8394		21.747	5.8995	1		+		18938	19034	13616	13720	18557	18557					0.030694564432451443
GVQKAVFLDK	10	Unmodified	_GVQKAVFLDK_					0	0	0			REV__ENSG00000173253|ENST00000358146|DMRT2	REV__ENSG00000173253|ENST00000358146|DMRT2	MULTI-MSMS	A375_MHC_IP_R2	2	369.2851257324219	3	368.885241	1103.63389	0.28996	0.00010696	0.30171	0.0001113	0.59167	0.00021826	368.8851668231658	42.236	1.072	43.008	42.196	43.268	0.7724					29	20	2	0	0	0	0.59998	1	15711	15711		20.871	2.1499	1	2658000	+		18939	21208	13617	13721	18558	18558					0.08622291402753035
GVQLRNNW	8	Unmodified	_GVQLRNNW_					0	0	0		ENST00000558711.1_2_15:33192152-33192383:-|nuORF	ENST00000558711.1_2_15:33192152-33192383:-|nuORF	ENST00000558711.1_2_15:33192152-33192383:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	494.1618957519531	2	493.761958	985.509363	-0.53271	-0.00026303	0.93645	0.00046238	0.40374	0.00019935	493.7624524793948	27.792	0.45319	27.792	27.584	28.037	0					13	8	2	0	0	0	0.94479	1	8524	8524		13.508	3.434	1	3371300			18940	13471	13618	13722	18559	18559					0.016028387060714522
GVQLRNNW	8	Unmodified	_GVQLRNNW_					0	0	0		ENST00000558711.1_2_15:33192152-33192383:-|nuORF	ENST00000558711.1_2_15:33192152-33192383:-|nuORF	ENST00000558711.1_2_15:33192152-33192383:-|nuORF	MSMS	A375_MHC_IP_R2	2	494.1619567871094	2	493.761958	985.509363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.165	1	27.844	27.344	28.344	0.67857								0	0	0	0.16876	1	9250	9250		19.439	0.18201	1				18941	13471	13618	13722	18560	18560					0.016028387060714522
GVQQLQPVQLS	11	Unmodified	_GVQQLQPVQLS_					0	0	0			REV__ENSG00000164742|ENST00000297323|ADCY1	REV__ENSG00000164742|ENST00000297323|ADCY1	MULTI-MSMS	A375_MHC_IP_R2	2	399.6239013671875	3	399.559305	1195.65609	-0.44989	-0.00017976	-0.33892	-0.00013542	-0.78881	-0.00031518	399.5591500357308	24.765	0.66087	25.408	25.212	25.873	0.64368					19	10	2	0	0	0	0.7328	1	8268	8268		6.2344	0.45093	1	14501000	+		18942	20513	13619	13723	18561	18561					0.0660847108051712
GVQQNNTESF	10	Unmodified	_GVQQNNTESF_					0	0	0		ENST00000545218.5_1_12:121756099-121775126:-|nuORF;ENST00000538334.1_1_12:121764442-121765135:-|nuORF;ENST00000534976.5_1_12:121756302-121773353:-|nuORF;ENST00000535472.5_1_12:121764442-121775147:-|nuORF;ENST00000535641.5_1_12:121746285-121765135:-|nuORF;nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5	ENST00000545218.5_1_12:121756099-121775126:-|nuORF	ENST00000545218.5_1_12:121756099-121775126:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	375.57244873046875	3	375.171999	1122.49417	-0.14321	-5.3729E-05	0.57995	0.00021758	0.43674	0.00016385	375.1722464967562	33.962	0.96519	34.714	34.399	35.364	0.75225					31	18	3	0	0	0	0.93578	1	12179	12179		8.9762	8.9762	1	11709000			18943	13321	13620	13724	18562	18562					-0.06218117672437984
GVQSVARAT	9	Unmodified	_GVQSVARAT_					0	0	0			REV__ENST00000456404.5_1_20:30310076-30311747:-|nuORF	REV__ENST00000456404.5_1_20:30310076-30311747:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	444.1529846191406	2	444.748516	887.482479	-0.37864	-0.0001684	1.3311	0.00059201	0.95246	0.00042361	444.74837276271865	30.678	0.30355	30.678	30.503	30.806	0					7	5	2	0	0	0	0.46045	1	9758	9758		36.127	10.728	1	790950	+		18944	24936	13621	13725	18563	18563					0.03423730094891653
GVQVLFPLF	9	Unmodified	_GVQVLFPLF_					0	0	0		nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;LRBA|p.A543Dfs*12|1|0.47|ENSG00000198589|chr4:150905962-150905965|ACTG/-|frameshift_variant	nc|ENSG00000198589|P50851-2|LRBA	nc|ENSG00000198589|P50851-2|LRBA	MSMS	A375_MHC_IP_R2	2	510.1996154785156	2	510.299853	1018.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.971	1	86.704	86.204	87.204	0.733								0	0	0	0.15486	1	32694	32694		13.508	0.97634	1				18945	9287	13622	13726	18564	18564					0.07660422833646408
GVRASQVF	8	Unmodified	_GVRASQVF_					0	0	0			REV__ENST00000507522.1_1_5:251563-256495:+|nuORF	REV__ENST00000507522.1_1_5:251563-256495:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	432.6401062011719	2	432.240327	862.466101	-0.16832	-7.2756E-05	-0.52276	-0.00022596	-0.69108	-0.00029871	432.2399181305203	42.693	0.60772	43.465	43.268	43.876	0.7724					15	11	2	0	0	0	0.84748	1	15916	15916		36.044	1.9418	1	2704400	+		18946	25566	13623	13727	18565	18565					0.02936648928800878
GVRCRGPL	8	Unmodified	_GVRCRGPL_					0	0	0			REV__ENST00000468844.1_1_X:118925076-118925472:-|nuORF	REV__ENST00000468844.1_1_X:118925076-118925472:-|nuORF	MSMS	A375_MHC_IP_R1	1	429.291259765625	2	429.242347	856.47014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.471	1	44.471	43.971	44.971	0								0	0	0	0.16876	1	15516	15516		5.7604	0	1		+		18947	25087	13624	13728	18566	18566					0.03616415150872854
GVRFLKKTPWL	11	Unmodified	_GVRFLKKTPWL_					0	0	0		ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6	ENSG00000172292|ENST00000305747|CERS6	ENSG00000172292|ENST00000305747|CERS6	MULTI-SECPEP	A375_MHC_IP_R1	1	672.8073120117188	2	672.911165	1343.80778	-0.84973	-0.00057179	-0.81176	-0.00054625	-1.6615	-0.001118	672.9103259041015	130.23	0.35657	130.23	130.01	130.36	0					9	6	2	0	0	0	0.99921	1	50104	50104		3.2813	2.2098	1	9415700			18948	7698	13625	13729	18567	18567					0.1496249689889737
GVRFNQPRRRR	11	Unmodified	_GVRFNQPRRRR_					0	0	0			REV__ENST00000262646.11_1_8:61429433-61429637:+|nuORF	REV__ENST00000262646.11_1_8:61429433-61429637:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	721.8207397460938	2	721.421617	1440.82868	-0.92528	-0.00066752	0.065236	4.7062E-05	-0.86004	-0.00062045	721.4214009257809	141.73	1.6829	141.73	140.75	142.44	0					53	32	2	0	0	0	0.73897	1	54263	54263		0.35063	0.043601	1	829640	+		18949	23211	13626	13730	18568	18568					0.12589900051079894
GVRFNQPRRRR	11	Unmodified	_GVRFNQPRRRR_					0	0	0			REV__ENST00000262646.11_1_8:61429433-61429637:+|nuORF	REV__ENST00000262646.11_1_8:61429433-61429637:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	721.421617	1440.82868	-0.92528	-0.00066752	0.065236	4.7062E-05	-0.86004	-0.00062045	721.4214009257809	141.73	1.6829	141.73	140.75	142.44	0	-0.0084037	0.00012871	NaN	0.35063	53	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	829640	+		18950	23211	13626	13730							0.12589900051079894
GVRFVALAAII	11	Unmodified	_GVRFVALAAII_					0	0	0			REV__TAS2R20|p.S54F|1|0.33|ENSG00000255837|chr12:10997715-10997715|G/A|missense_variant	REV__TAS2R20|p.S54F|1|0.33|ENSG00000255837|chr12:10997715-10997715|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	377.93408203125	3	377.241248	1128.70191	-0.31755	-0.00011979	0.24522	9.2508E-05	-0.072323	-2.7283E-05	377.2413503728024	37.274	1.1245	38.045	37.767	38.891	0.7709					54	21	3	0	0	0	0.73195	1	13878	13878		7.0371	1.9896	1	260560000	+		18951	28080	13627	13731	18569	18569					0.14271161053420656
GVRGEIYLVR	10	Unmodified	_GVRGEIYLVR_					0	0	0			REV__ENST00000413987.1_1_1:28832593-28835482:+|nuORF	REV__ENST00000413987.1_1_1:28832593-28835482:+|nuORF	MSMS	A375_MHC_IP_R1	1	387.6014404296875	3	387.89614	1160.66659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.309	1	70.309	69.809	70.809	0								0	0	0	0.15531	1	25527	25527		1.7423	1.0446	1		+		18952	24383	13628	13732	18570	18570					0.09268498525602809
GVRGRKPG	8	Unmodified	_GVRGRKPG_					0	0	0		ENST00000264824.4_1_19:13212008-13213661:-|nuORF;ENST00000590974.1_1_19:13211801-13213661:-|nuORF	ENST00000264824.4_1_19:13212008-13213661:-|nuORF	ENST00000264824.4_1_19:13212008-13213661:-|nuORF	MSMS	A375_MHC_IP_R2	2	413.65179443359375	2	413.753936	825.493319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.372	1	72.106	71.606	72.606	0.73421								0	0	0	0.16876	1	27075	27075		2.5775	0	1				18953	10339	13629	13733	18571	18571					0.07359177259843364
GVRGRRTPL	9	Unmodified	_GVRGRRTPL_					0	0	0			REV__ENST00000568087.5_1_15:74212283-74220177:-|nuORF	REV__ENST00000568087.5_1_15:74212283-74220177:-|nuORF	MSMS	A375_MHC_IP_R2	2	506.76434326171875	2	506.312149	1010.60975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.14	1	94.885	94.385	95.385	0.74474								0	0	0	0.15486	1	35780	35780		6.7232	1.4925	1		+		18954	26236	13630	13734	18572	18572					0.1048649575974423
GVRHQLRRL	9	Unmodified	_GVRHQLRRL_					0	0	0			REV__ENSG00000166888|ENST00000300134|STAT6	REV__ENSG00000166888|ENST00000300134|STAT6	MSMS	A375_MHC_IP_R1	1	378.9365234375	3	378.903741	1133.68939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.297	1	25.297	24.797	25.797	0								0	0	0	0.15486	1	7362	7362		4.897	0.36815	1		+		18955	20713	13631	13735	18573	18573					0.1278956243374978
GVRIKNFDTW	10	Unmodified	_GVRIKNFDTW_					0	0	0			REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30	REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30	MULTI-MSMS	A375_MHC_IP_R1	1	618.2537231445312	2	618.330205	1234.64586	-0.35464	-0.00021928	0.65207	0.00040319	0.29743	0.00018391	618.3305302871045	93.841	0.60655	93.841	93.584	94.191	0					16	11	2	0	0	0	0.45806	1	34497	34497		29.082	5.061	1	1548200	+		18956	18762	13632	13736	18574	18574					0.037919081459449444
GVRIKNFDTW	10	Unmodified	_GVRIKNFDTW_					0	0	0			REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30	REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30	MULTI-SECPEP	A375_MHC_IP_R1	1	618.7305297851562	2	618.330205	1234.64586	-0.35464	-0.00021928	0.65207	0.00040319	0.29743	0.00018391	618.3305302871045	93.841	0.60655	93.841	93.584	94.191	0					16	11	2	0	0	0	0.83355	1	34536	34536		22.736	6.5872	1	1548200	+		18957	18762	13632	13736	18575	18575					0.037919081459449444
GVRIKNFDTW	10	Unmodified	_GVRIKNFDTW_					0	0	0			REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30	REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30	MULTI-SECPEP	A375_MHC_IP_R2	2	618.7305297851562	2	618.330205	1234.64586	-0.59515	-0.000368	0.96978	0.00059965	0.37464	0.00023165	618.330754638893	93.032	0.45506	93.771	93.546	94.001	0.73902					12	8	2	0	0	0	0.83355	1	35367	35367		22.736	7.4878	1	1826100	+		18958	18762	13632	13736	18576	18576					0.037919081459449444
GVRKLLRWVRR	11	Unmodified	_GVRKLLRWVRR_					0	0	0		ENSG00000134962|ENST00000257408|KLB	ENSG00000134962|ENST00000257408|KLB	ENSG00000134962|ENST00000257408|KLB	MSMS	A375_MHC_IP_R1	1	720.05224609375	2	719.965129	1437.9157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.99	1	103.99	103.49	104.49	0								0	0	0	0.16353	1	38185	38185		0.35063	0	1				18959	4630	13633	13737	18577	18577					0.21426306272815054
GVRKTALAIK	10	Unmodified	_GVRKTALAIK_					0	0	0		ENSG00000236320|ENST00000674182|SLFN14;nc|ENSG00000236320|P0C7P3-2|SLFN14	ENSG00000236320|ENST00000674182|SLFN14	ENSG00000236320|ENST00000674182|SLFN14	MULTI-MSMS	A375_MHC_IP_R1	1	1057.08837890625	1	1056.68879	1055.68151	-0.21572	-0.00022795	-0.59604	-0.00062983	-0.81176	-0.00085778	1056.6880359286858	147.41	0.22047	147.41	147.31	147.53	0					36	22	2	0	0	0	0.72747	1	56331	56331		0	0	1	121660			18960	9750	13634	13738	18578	18578					0.15589990393573316
GVRKTALAIK	10	Unmodified	_GVRKTALAIK_					0	0	0		ENSG00000236320|ENST00000674182|SLFN14;nc|ENSG00000236320|P0C7P3-2|SLFN14	ENSG00000236320|ENST00000674182|SLFN14	ENSG00000236320|ENST00000674182|SLFN14	MULTI-MSMS	A375_MHC_IP_R2	2	1057.08837890625	1	1056.68879	1055.68151	0.25258	0.0002669	-0.39178	-0.00041399	-0.1392	-0.00014709	1056.688198141822	147.41	0.21735	147.43	147.34	147.56	0.019897					44	26	2	0	0	0	0.72747	1	57317	57317		0	0	1	134250			18961	9750	13634	13738	18579	18579					0.15589990393573316
GVRLLQAI	8	Unmodified	_GVRLLQAI_					0	0	0			REV__ENST00000466132.5_1_6:31948575-31948888:+|nuORF	REV__ENST00000466132.5_1_6:31948575-31948888:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	435.2822570800781	2	435.281995	868.549437	-0.26081	-0.00011353	-0.27827	-0.00012112	-0.53908	-0.00023465	435.28171889403495	73.927	0.50888	74.664	74.398	74.907	0.73751					14	9	2	0	0	0	0.70843	1	28036	28036		32.117	0	1	716110	+		18962	25033	13635	13739	18580	18580					0.10990385376646827
GVRLLQAI	8	Unmodified	_GVRLLQAI_					0	0	0			REV__ENST00000466132.5_1_6:31948575-31948888:+|nuORF	REV__ENST00000466132.5_1_6:31948575-31948888:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	435.281995	868.549437	-0.1621	-7.0557E-05	-0.3699	-0.00016101	-0.53199	-0.00023157	435.28165354921964	75.054	0.25249	75.054	74.908	75.16	0	0.19514	-1.7574E-05	NaN	32.117	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	681130	+		18963	25033	13635	13739							0.10990385376646827
GVRLLQAI	8	Unmodified	_GVRLLQAI_					0	0	0			REV__ENST00000466132.5_1_6:31948575-31948888:+|nuORF	REV__ENST00000466132.5_1_6:31948575-31948888:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	435.281995	868.549437	-0.26081	-0.00011353	-0.27827	-0.00012112	-0.53908	-0.00023465	435.28171889403495	73.927	0.50888	74.664	74.398	74.907	0.73751	-0.19514	6.2197E-05	NaN	32.117	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	716110	+		18964	25033	13635	13739							0.10990385376646827
GVRLTLRPIVL	11	Unmodified	_GVRLTLRPIVL_					0	0	0			REV__TAF3|p.P756L|1|0.3|ENSG00000165632|chr10:7977275-7977275|C/T|missense_variant	REV__TAF3|p.P756L|1|0.3|ENSG00000165632|chr10:7977275-7977275|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	618.8086547851562	2	618.911165	1235.80778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.936	1	98.936	98.436	99.436	0								0	0	0	0.16337	1	36347	36347		1.1933	0	1		+		18965	28077	13636	13740	18581	18581					0.19930496898859928
GVRNGLRRDG	10	Unmodified	_GVRNGLRRDG_					0	0	0			REV__ENST00000479404.5_1_9:215217-215412:+|nuORF	REV__ENST00000479404.5_1_9:215217-215412:+|nuORF	MSMS	A375_MHC_IP_R2	2	550.6170043945312	2	550.307595	1098.60064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.622	1	23.252	22.752	23.752	0.63014								0	0	0	0.15591	1	7197	7197		1.6526	0	1		+		18966	25232	13637	13741	18582	18582					0.05528102403400226
GVRNVHTT	8	Unmodified	_GVRNVHTT_					0	0	0		ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000512472.5_1_6:43484832-43487226:+|nuORF	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	441.666015625	2	442.240858	882.467164	0.065937	2.916E-05	0.44677	0.00019758	0.5127	0.00022674	442.241115240616	106.07	0.35651	106.07	105.91	106.27	0					11	6	2	0	0	0	0.972	1	38951	38951		5.2307	5.2307	1	661500			18967	7601	13638	13742	18583	18583					0.021228632976999506
GVRPPPRGA	9	Unmodified	_GVRPPPRGA_					0	0	0		ENST00000373511.6_1_9:128200812-128200935:-|nuORF	ENST00000373511.6_1_9:128200812-128200935:-|nuORF	ENST00000373511.6_1_9:128200812-128200935:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	454.1668701171875	2	453.767043	905.519533	-0.043028	-1.9525E-05	-0.28605	-0.0001298	-0.32907	-0.00014932	453.7668974211518	142.47	0.30562	142.51	142.28	142.58	0.030731					8	5	2	0	0	0	0.75764	1	55718	55718		1.8442	1.0506	1	5817100			18968	11232	13639	13743	18584	18584					0.06299446431319211
GVRPPPRGA	9	Unmodified	_GVRPPPRGA_					0	0	0		ENST00000373511.6_1_9:128200812-128200935:-|nuORF	ENST00000373511.6_1_9:128200812-128200935:-|nuORF	ENST00000373511.6_1_9:128200812-128200935:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	453.767043	905.519533	-0.56918	-0.00025827	-0.36762	-0.00016682	-0.9368	-0.00042509	453.7667879908527	142.46	0.30179	142.46	142.29	142.59	0	-0.022317	-5.3255E-06	NaN	1.8442	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4238000			18969	11232	13639	13743							0.06299446431319211
GVRPRRSE	8	Unmodified	_GVRPRRSE_					0	0	0			REV__ENST00000278070.6_1_10:103892805-103892964:+|nuORF	REV__ENST00000278070.6_1_10:103892805-103892964:+|nuORF	MSMS	A375_MHC_IP_R2	2	478.6690979003906	2	478.772857	955.531161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.7	1	124.03	123.53	124.53	0.32969								0	0	0	0.16876	1	47635	47635		5.2307	0.47466	1		+		18970	23306	13640	13744	18585	18585					0.05161643454653131
GVRQLGRQ	8	Unmodified	_GVRQLGRQ_					0	0	0			REV__ENSG00000143303|ENST00000368216|METTL25B	REV__ENSG00000143303|ENST00000368216|METTL25B	MULTI-MSMS	A375_MHC_IP_R2	2	914.622314453125	1	913.532624	912.525347	-0.25603	-0.00023389	-1.309	-0.0011958	-1.565	-0.0014297	913.5323795315653	117.98	0.65824	118.59	118.44	119.1	0.60909					16	12	2	0	0	0	0.77702	1	44800	44800		5.7604	0	1	13564000	+		18971	19344	13641	13745	18586	18586					0.06558544942981825
GVRSKAHG	8	Unmodified	_GVRSKAHG_					0	0	0		ENST00000360537.6_1_6:144269163-144269316:-|nuORF	ENST00000360537.6_1_6:144269163-144269316:-|nuORF	ENST00000360537.6_1_6:144269163-144269316:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	406.6302185058594	2	406.230294	810.446034	0.21579	8.7659E-05	-0.060836	-2.4713E-05	0.15495	6.2945E-05	406.2301960415241	100.29	2.6511	101.06	100.07	102.72	0.76278					90	51	3	0	0	0	0.77839	1	38015	38015		0.79363	0	1	4447100			18972	11031	13642	13746	18587	18587					0.03322897988846307
GVRSRLRRI	9	Unmodified	_GVRSRLRRI_					0	0	0		ENST00000531364.5_2_11:71158720-71159358:-|nuORF	ENST00000531364.5_2_11:71158720-71159358:-|nuORF	ENST00000531364.5_2_11:71158720-71159358:-|nuORF	MSMS	A375_MHC_IP_R2	2	371.6109924316406	3	371.575624	1111.70504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.86	1	31.578	31.078	32.078	0.71857								0	0	0	0.15486	1	10875	10875		0.26902	0	1				18973	13167	13643	13747	18588	18588					0.15365848950796135
GVRSYLHQFYE	11	Unmodified	_GVRSYLHQFYE_					0	0	0		ENSG00000152954|ENST00000378491|NRSN1	ENSG00000152954|ENST00000378491|NRSN1	ENSG00000152954|ENST00000378491|NRSN1	MSMS	A375_MHC_IP_R1	1	699.8078002929688	2	699.843676	1397.6728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.96	1	136.96	136.46	137.46	0								0	0	0	0.16334	1	52736	52736		1.3295	0	1				18974	5994	13644	13748	18589	18589					-0.010130280335260977
GVRTHETL	8	Unmodified	_GVRTHETL_					0	0	0		BDNF|p.G41E|1|0.43|ENSG00000176697|chr11:27658443-27658443|C/T|missense_variant	BDNF|p.G41E|1|0.43|ENSG00000176697|chr11:27658443-27658443|C/T|missense_variant	BDNF|p.G41E|1|0.43|ENSG00000176697|chr11:27658443-27658443|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	456.6871643066406	2	456.748516	911.482479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.658	1	62.658	62.158	63.158	0								0	0	0	0.16876	1	22636	22636		13.508	0.97634	1				18975	232	13645	13749	18590	18590					0.023197300949163946
GVRVLNVSLK	10	Unmodified	_GVRVLNVSLK_					0	0	0			REV__ENST00000603928.2_2_9:136891784-136891907:+|nuORF	REV__ENST00000603928.2_2_9:136891784-136891907:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	542.1834716796875	2	542.84549	1083.67643	-1.1677	-0.00063387	0.066053	3.5857E-05	-1.1016	-0.00059802	542.8455083075575	59.951	0.40429	60.698	60.501	60.906	0.74714					14	7	3	0	0	0	0.91643	1	22676	22676		9.3831	2.66	1	2241800	+		18976	26527	13646	13750	18591	18591					0.1379368653099391
GVRVTQFGEGL	11	Unmodified	_GVRVTQFGEGL_					0	0	0			REV__ENST00000534610.5_1_11:46665841-46681092:+|nuORF	REV__ENST00000534610.5_1_11:46665841-46681092:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	388.257080078125	3	388.212017	1161.61422	0.090243	3.5033E-05	0.53074	0.00020604	0.62099	0.00024107	388.2122364223904	28.207	0.40324	28.207	28.037	28.44	0					11	7	3	0	0	0	0.72869	1	8678	8678		5.5233	0.12058	1	1631500	+		18977	21333	13647	13751	18592	18592					0.0398791539200829
GVRYDKAI	8	Unmodified	_GVRYDKAI_					0	0	0			REV__ENSG00000128833|ENST00000261839|MYO5C	REV__ENSG00000128833|ENST00000261839|MYO5C	MULTI-SECPEP	A375_MHC_IP_R1	1	461.66094970703125	2	461.261259	920.507966	0.27717	0.00012785	-0.76135	-0.00035118	-0.48418	-0.00022333	461.2607763782979	49.109	0.5057	49.109	48.882	49.387	0					11	9	2	0	0	0	0.95423	1	17390	17390		12.532	4.6214	1	1571800	+		18978	18471	13648	13752	18593	18593					0.04453204617323081
GVRYDKAI	8	Unmodified	_GVRYDKAI_					0	0	0			REV__ENSG00000128833|ENST00000261839|MYO5C	REV__ENSG00000128833|ENST00000261839|MYO5C	MULTI-MATCH	A375_MHC_IP_R2	2		2	461.261259	920.507966	-0.37461	-0.00017279	-0.040686	-1.8767E-05	-0.4153	-0.00019156	461.2611612778427	48.108	0.40176	48.869	48.682	49.084	0.76127	-0.11994	0.00019039	NaN	12.532	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1620000	+		18979	18471	13648	13752							0.04453204617323081
GVRYNRTL	8	Unmodified	_GVRYNRTL_					0	0	0		ENSG00000198108|ENST00000305031|CHSY3	ENSG00000198108|ENST00000305031|CHSY3	ENSG00000198108|ENST00000305031|CHSY3	MULTI-MSMS	A375_MHC_IP_R1	1	490.17559814453125	2	489.777608	977.540663	-0.25456	-0.00012468	-2.7716	-0.0013575	-3.0262	-0.0014821	489.77613863882584	128.66	0.35483	128.66	128.48	128.84	0					11	6	2	0	0	0	0.77123	1	49462	49462		14.582	0.67564	1	6945300			18980	9230	13649	13753	18594	18594					0.050994117401728545
GVSAGNSRGEL	11	Unmodified	_GVSAGNSRGEL_					0	0	0			REV__ENST00000262815.12_2_19:19467015-19467252:+|nuORF	REV__ENST00000262815.12_2_19:19467015-19467252:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	522.9794311523438	2	523.764894	1045.51524	-0.51962	-0.00027216	2.4669	0.0012921	1.9473	0.0010199	523.7672109473481	34.65	0.40513	34.65	34.405	34.81	0					16	7	3	0	0	0	0.9754	1	11410	11410		8.1555	0	1	2034800	+		18981	23215	13650	13754	18595	18595					-0.00570107572912093
GVSEEIDEEY	10	Unmodified	_GVSEEIDEEY_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	A375_MHC_IP_R1	1	585.646240234375	2	585.245866	1168.47718	-0.16482	-9.6463E-05	0.67608	0.00039567	0.51125	0.00029921	585.2463152064297	43.477	0.50744	43.477	43.3	43.808	0					15	9	2	0	0	0	0.66712	1	15124	15124		15.847	4.2069	1	4208600	+		18982	22304	13651	13755	18596	18596					-0.10032083068881548
GVSEGQFQQVL	11	Unmodified	_GVSEGQFQQVL_					0	0	0		nc|ENSG00000123908|Q9UKV8-2|AGO2;ENSG00000123908|ENST00000220592|AGO2	nc|ENSG00000123908|Q9UKV8-2|AGO2	nc|ENSG00000123908|Q9UKV8-2|AGO2	MULTI-SECPEP	A375_MHC_IP_R1	1	397.2755126953125	3	397.87166	1190.59315	-0.34845	-0.00013864	1.1197	0.00044548	0.77121	0.00030684	397.8715807637495	27.861	0.30275	27.861	27.684	27.987	0					8	5	2	0	0	0	0.98748	1	8512	8512		1.1098	1.0264	1	2739100			18983	3862	13652	13756	18597	18597					0.0054790529247839
GVSFAQNNFQ	10	Unmodified	_GVSFAQNNFQ_					0	0	0			REV__nc|ENSG00000073969|P46459-2|NSF	REV__nc|ENSG00000073969|P46459-2|NSF	MULTI-SECPEP	A375_MHC_IP_R2	2	371.9645690917969	3	371.177084	1110.50942	0.41814	0.0001552	0.61133	0.00022691	1.0295	0.00038211	371.17728421485515	67.546	0.40839	68.282	68.052	68.461	0.73631					11	7	2	0	0	0	0.94421	1	25661	25661		1.9064	0	1	2122600	+		18984	16628	13653	13757	18598	18598					-0.04141206084591431
GVSFLHPLFL	10	Unmodified	_GVSFLHPLFL_					0	0	0			REV__ENST00000368346.7_1_1:155306966-155307122:-|nuORF	REV__ENST00000368346.7_1_1:155306966-155307122:-|nuORF	MSMS	A375_MHC_IP_R1	1	377.1174621582031	3	377.218332	1128.63317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.957	1	93.957	93.457	94.457	0								0	0	0	0.15583	1	34535	34535		1.9064	0.79662	1		+		18985	23992	13654	13758	18599	18599					0.07399496753691892
GVSFVVHE	8	Unmodified	_GVSFVVHE_					0	0	0			REV__ENSG00000146205|ENST00000674324|ANO7	REV__ENSG00000146205|ENST00000674324|ANO7	MSMS	A375_MHC_IP_R2	2	437.1568603515625	2	437.226885	872.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.47	1	109.23	108.73	109.73	0.75436								0	0	0	0.16876	1	40957	40957		9.3474	1.4373	1		+		18986	19521	13655	13759	18600	18600					-0.0021045968237558554
GVSGCGSG	8	Unmodified	_GVSGCGSG_					0	0	0			REV__ENST00000442998.6_1_6:33541307-33541814:-|nuORF	REV__ENST00000442998.6_1_6:33541307-33541814:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	622.6611938476562	1	623.245351	622.238075	-0.66737	-0.00041594	-1.2452	-0.0007761	-1.9126	-0.001192	623.2444249278092	91.871	0.20162	92.606	92.478	92.68	0.7345					5	3	2	0	0	0	0.972	1	34897	34897		0.69038	0	1	1820000	+		18987	24823	13656	13760	18601	18601					-0.08815471990544665
GVSGCSFSLS	10	Unmodified	_GVSGCSFSLS_					0	0	0		ENST00000369797.7_1_10:105205663-105205864:+|nuORF	ENST00000369797.7_1_10:105205663-105205864:+|nuORF	ENST00000369797.7_1_10:105205663-105205864:+|nuORF	MSMS	A375_MHC_IP_R1	1	472.13055419921875	2	472.213117	942.411682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.333	1	68.333	67.833	68.833	0								0	0	0	0.15158	1	24773	24773		14.838	0.25658	1				18988	11140	13657	13761	18602	18602					-0.061827310049238804
GVSGFRYTV	9	Unmodified	_GVSGFRYTV_					0	0	0			REV__ENST00000299135.6_1_14:102606435-102676214:+|nuORF	REV__ENST00000299135.6_1_14:102606435-102676214:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	494.203125	2	493.258717	984.50288	-0.37496	-0.00018495	0.21224	0.00010469	-0.16272	-8.0265E-05	493.2587936144659	60.912	0.66123	60.912	60.618	61.279	0					26	12	3	0	0	0	0.40079	1	22000	22000		24.674	2.9272	1	11519000	+		18989	19195	13658	13762	18603	18603					0.010009007547068904
GVSGILQVTSL	11	Unmodified	_GVSGILQVTSL_					0	0	0		nc|ENSG00000162365|Q5TCH4-2|CYP4A22;ENSG00000162365|ENST00000371891|CYP4A22	nc|ENSG00000162365|Q5TCH4-2|CYP4A22	nc|ENSG00000162365|Q5TCH4-2|CYP4A22	MULTI-MSMS	A375_MHC_IP_R2	2	358.913330078125	3	358.544885	1072.61282	-0.5155	-0.00018483	0.79929	0.00028658	0.28379	0.00010175	358.54522827152675	23.324	0.25142	23.954	23.828	24.079	0.63014					6	4	2	0	0	0	0.72565	1	7489	7489		7.0371	0	1	2545000			18990	6520	13659	13763	18604	18604					0.07942281303257914
GVSGKRLR	8	Unmodified	_GVSGKRLR_					0	0	0			REV__ENSG00000164363|ENST00000324642|SLC6A18	REV__ENSG00000164363|ENST00000324642|SLC6A18	MSMS	A375_MHC_IP_R2	2	436.67120361328125	2	436.774868	871.535184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.005	1	57.755	57.255	58.255	0.75015								0	0	0	0.16876	1	21552	21552		13.508	0	1		+		18991	20490	13660	13764	18605	18605					0.09427732948370249
GVSGPVGPPGH	11	Unmodified	_GVSGPVGPPGH_					0	0	0			REV__COL17A1|p.G909Rfs*56|1|0.35|ENSG00000065618|chr10:104040388-104040389|-/G|frameshift_variant	REV__COL17A1|p.G909Rfs*56|1|0.35|ENSG00000065618|chr10:104040388-104040389|-/G|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	481.1485595703125	2	480.748516	959.482479	-0.38267	-0.00018397	0.16623	7.9913E-05	-0.21645	-0.00010406	480.7485616527308	54.796	0.55906	54.796	54.516	55.075	0					17	10	2	0	0	0	0.88538	1	19587	19587		18.146	0	1	2623500	+		18992	15823	13661	13765	18606	18606					0.0011173009489766628
GVSGRIRWIC	10	Unmodified	_GVSGRIRWIC_					0	0	0		ENST00000537064.5_1_12:133257767-133263855:-|nuORF	ENST00000537064.5_1_12:133257767-133263855:-|nuORF	ENST00000537064.5_1_12:133257767-133263855:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	383.59661865234375	3	382.878204	1145.61278	0.08454	3.2369E-05	-2.7857	-0.0010666	-2.7012	-0.0010342	382.8776436132975	24.117	0.25348	24.117	23.889	24.143	0					5	4	2	0	0	0	0.91442	1	6683	6683		7.0371	0	1	494930			18993	13247	13662	13766	18607	18607					0.045800028222402034
GVSHLDSVII	10	Unmodified	_GVSHLDSVII_					0	0	0			REV__ENSG00000130943|ENST00000253255|PKDREJ	REV__ENSG00000130943|ENST00000253255|PKDREJ	MULTI-MSMS	A375_MHC_IP_R2	2	520.6921997070312	2	520.292756	1038.57096	-0.96974	-0.00050455	-0.51314	-0.00026698	-1.4829	-0.00077153	520.292672349438	58.594	0.61074	59.343	58.829	59.44	0.74894					17	11	3	0	0	0	0.51963	1	22189	22189		26.884	1.4843	1	1329700	+		18994	18575	13663	13767	18608	18608					0.053217256147036096
GVSHTLKR	8	Unmodified	_GVSHTLKR_					0	0	0		ENST00000391835.1_1_19:50380997-50381111:-|nuORF	ENST00000391835.1_1_19:50380997-50381111:-|nuORF	ENST00000391835.1_1_19:50380997-50381111:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	897.6900024414062	1	897.526476	896.519199	-0.50683	-0.00045489	-2.0837	-0.0018701	-2.5905	-0.002325	897.5264241352983	121.15	0.76136	121.15	120.7	121.47	0					33	14	4	0	0	0	0.972	1	44890	44890		5.7604	3.1829	1	63371000			18995	11411	13664	13768	18609	18609					0.06680026711467235
GVSICRIH	8	Unmodified	_GVSICRIH_					0	0	0		ENST00000427419.5_2_2:190445193-190446742:-|nuORF;ENST00000455320.5_2_2:190446526-190446742:-|nuORF	ENST00000427419.5_2_2:190445193-190446742:-|nuORF	ENST00000427419.5_2_2:190445193-190446742:-|nuORF	MSMS	A375_MHC_IP_R2	2	442.6407165527344	2	442.742179	883.469806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.14	1	107.9	107.4	108.4	0.75436								0	0	0	0.16876	1	40482	40482		5.2307	2.6532	1				18996	11820	13665	13769	18610	18610					0.023409954309954628
GVSKEPGQLE	10	Unmodified	_GVSKEPGQLE_					0	0	0		nc|ENSG00000019485|Q9NQV5-2|PRDM11;nc|ENSG00000019485|Q9NQV5|PRDM11;ENSG00000019485|ENST00000683152|PRDM11	nc|ENSG00000019485|Q9NQV5-2|PRDM11	nc|ENSG00000019485|Q9NQV5-2|PRDM11	MULTI-SECPEP	A375_MHC_IP_R1	1	521.7005615234375	2	522.272021	1042.52949	-0.6644	-0.000347	-3.3806	-0.0017656	-4.045	-0.0021126	522.7722267961499	80.693	0.55701	80.693	80.238	80.795	0					12	10	2	0	0	0	0.92514	1	29409	29409		8.1555	0	1	1288900			18997	1052	13666	13770	18611	18611					0.009925448553985916
GVSKRKCIVW	10	Unmodified	_GVSKRKCIVW_					0	0	0		ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4	ENSG00000141076|ENST00000314423|UTP4	ENSG00000141076|ENST00000314423|UTP4	MULTI-MSMS	A375_MHC_IP_R1	1	392.62799072265625	3	392.562104	1174.66448	0.036912	1.449E-05	0.54117	0.00021244	0.57808	0.00022693	392.5625475251446	58.487	0.60916	58.487	58.278	58.887	0					16	11	2	0	0	0	0.71811	1	21143	21143		4.1895	1.1943	1	1197600			18998	5212	13667	13771	18612	18612					0.08413746516157516
GVSLAATKGN	10	Unmodified	_GVSLAATKGN_					0	0	0			REV__ENST00000400109.2_1_13:19879246-19879522:-|nuORF	REV__ENST00000400109.2_1_13:19879246-19879522:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	459.6868896484375	2	459.256174	916.497795	-0.26358	-0.00012105	-0.46825	-0.00021505	-0.73183	-0.0003361	459.2559197058639	47.997	0.25131	48.758	48.532	48.783	0.76128					7	4	2	0	0	0	0.63639	1	17969	17969		18.146	0	1	1306400	+		18999	24399	13668	13772	18613	18613					0.03620596892085359
GVSLAPVSL	9	Unmodified	_GVSLAPVSL_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	A375_MHC_IP_R1	1	843.5974731445312	1	842.498195	841.490919	-0.30836	-0.00025979	-1.1759	-0.00099068	-1.4843	-0.0012505	842.4969981463073	100.58	1.2167	100.58	100.18	101.39	0					35	23	2	0	0	0	0.58047	1	36955	36955		15.847	1.0089	1	2926500			19000	6371	13669	13773	18614	18614					0.06383284011531032
GVSLAPVSL	9	Unmodified	_GVSLAPVSL_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-MATCH	A375_MHC_IP_R2	2		1	842.498195	841.490919	-0.46869	-0.00039487	-1.404	-0.0011829	-1.8727	-0.0015777	842.4968027815711	99.601	0.8627	100.36	100.02	100.88	0.76278	-0.10835	-9.9257E-05	NaN	15.847	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2879800			19001	6371	13669	13773							0.06383284011531032
GVSLCKYF	8	Unmodified	_GVSLCKYF_					0	0	0			REV__PPARA|p.H159Y|1|0.35|ENSG00000186951|chr22:46218368-46218368|C/T|missense_variant	REV__PPARA|p.H159Y|1|0.35|ENSG00000186951|chr22:46218368-46218368|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	458.673828125	2	458.733489	915.452425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.06	1	79.805	79.305	80.305	0.74474								0	0	0	0.16876	1	30000	30000		6.3541	0	1		+		19002	27826	13670	13774	18615	18615					-0.00868344894661277
GVSLGISEIY	10	Unmodified	_GVSLGISEIY_					0	0	0		ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	MULTI-SECPEP	A375_MHC_IP_R1	1	519.6796875	2	519.279315	1036.54408	-0.54117	-0.00028102	-0.010214	-5.3039E-06	-0.55138	-0.00028632	519.2793675554838	47.272	0.91821	47.272	46.952	47.87	0					31	17	3	0	0	0	0.61429	1	16602	16602		30.637	5.6456	1	10270000			19003	5021	13671	13775	18616	18616					0.027266170035318282
GVSLGISEIY	10	Unmodified	_GVSLGISEIY_					0	0	0		ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	MULTI-SECPEP	A375_MHC_IP_R2	2	518.9712524414062	2	519.279315	1036.54408	-0.54131	-0.00028109	0.073972	3.8412E-05	-0.46734	-0.00024268	519.2793870875803	46.529	1.0159	47.295	46.855	47.871	0.76518					42	19	4	0	0	0	0.78945	1	17490	17490		19.257	10.512	1	12986000			19004	5021	13671	13775	18617	18617					0.027266170035318282
GVSLRKKTVP	10	Unmodified	_GVSLRKKTVP_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MULTI-SECPEP	A375_MHC_IP_R1	1	362.9726867675781	3	362.232752	1083.67643	0.16511	5.9807E-05	-0.44234	-0.00016023	-0.27723	-0.00010042	362.2326119247678	46.355	0.75731	46.355	45.89	46.647	0					22	14	3	0	0	0	0.91932	1	16089	16089		11.518	4.8875	1	7223700	+		19005	20801	13672	13776	18618	18618					0.1379368653099391
GVSLSDFDI	9	Unmodified	_GVSLSDFDI_					0	0	0			REV__ENSG00000092964|ENST00000521913|DPYSL2	REV__ENSG00000092964|ENST00000521913|DPYSL2	MSMS	A375_MHC_IP_R1	1	476.6953125	2	476.73474	951.454927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.392	1	85.392	84.892	85.892	0								0	0	0	0.1521	1	31295	31295		18.135	3.5533	1		+		19006	16979	13673	13777	18619	18619					-0.022742179560054865
GVSLSDQVEKS	11	Unmodified	_GVSLSDQVEKS_					0	0	0			REV__ENSG00000216937|ENST00000639629|CCDC7	REV__ENSG00000216937|ENST00000639629|CCDC7	MSMS	A375_MHC_IP_R1	1	383.57122802734375	3	383.531304	1147.57208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.728	1	37.728	37.228	38.228	0								0	0	0	0.15971	1	12739	12739		8.2864	0.34103	1		+		19007	22680	13674	13778	18620	18620					0.0041989519295384525
GVSLVQKWKA	10	Unmodified	_GVSLVQKWKA_					0	0	0			REV__ENST00000466991.5_1_22:32000566-32002358:+|nuORF	REV__ENST00000466991.5_1_22:32000566-32002358:+|nuORF	MSMS	A375_MHC_IP_R1	1	372.576904296875	3	372.557236	1114.64988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.504	1	24.504	24.004	25.004	0								0	0	0	0.15539	1	6970	6970		3.3196	0.58445	1		+		19008	25048	13675	13779	18621	18621					0.0971399763966474
GVSPAARVEIL	11	Unmodified	_GVSPAARVEIL_					0	0	0			REV__ENST00000395884.3_1_8:103665886-103666201:-|nuORF	REV__ENST00000395884.3_1_8:103665886-103666201:-|nuORF	MSMS	A375_MHC_IP_R2	2	556.4988403320312	2	556.327131	1110.63971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.16	1	85.896	85.396	86.396	0.73601								0	0	0	0.16108	1	32374	32374		13.042	1.928	1		+		19009	24330	13676	13780	18622	18622					0.08881389914404281
GVSQLLPK	8	Unmodified	_GVSQLLPK_					0	0	0		nc|ENSG00000130475|O14526-3|FCHO1;nc|ENSG00000130475|O14526-2|FCHO1;ENSG00000130475|ENST00000596536|FCHO1;FCHO1|p.S137F|1|0.38|ENSG00000130475|chr19:17770498-17770498|C/T|missense_variant;ENST00000597076.5_1_19:17881245-17885205:+|nuORF	nc|ENSG00000130475|O14526-3|FCHO1	nc|ENSG00000130475|O14526-3|FCHO1	MULTI-SECPEP	A375_MHC_IP_R2	2	421.96612548828125	2	421.260728	840.506903	-0.13346	-5.622E-05	0.16554	6.9736E-05	0.032085	1.3516E-05	421.2608025105999	30.794	0.35172	31.512	31.367	31.719	0.71857					9	6	2	0	0	0	0.94479	1	10817	10817		2.0598	0	1	1215500			19010	4245	13677	13781	18623	18623					0.08026990248424681
GVSRTPQLRT	10	Unmodified	_GVSRTPQLRT_					0	0	0		ENST00000334815.4_1_1:45792596-45792884:+|nuORF	ENST00000334815.4_1_1:45792596-45792884:+|nuORF	ENST00000334815.4_1_1:45792596-45792884:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	371.6108703613281	3	372.215761	1113.62546	0.12042	4.4822E-05	3.785	0.0014088	3.9054	0.0014537	372.21602413472385	21.093	0.55737	21.713	21.371	21.928	0.61932					21	10	3	0	0	0	0.93961	1	6538	6538		0.56317	0	1	1699400			19011	10800	13678	13782	18624	18624					0.07318737486139071
GVSSPDSLIL	10	Unmodified	_GVSSPDSLIL_					0	0	0		ENST00000287546.8_1_3:184769915-184770134:+|nuORF	ENST00000287546.8_1_3:184769915-184770134:+|nuORF	ENST00000287546.8_1_3:184769915-184770134:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	494.67120361328125	2	494.27149	986.528426	-0.25241	-0.00012476	0.050123	2.4774E-05	-0.20228	-9.9984E-05	494.2714768532897	42.345	0.4552	42.345	42.082	42.537	0					14	8	2	0	0	0	0.83086	1	14685	14685		6.7232	0.51738	1	3639100			19012	10456	13679	13783	18625	18625					0.03462330486490828
GVSSQSKETPV	11	Unmodified	_GVSSQSKETPV_					0	0	0		ENSG00000198740|ENST00000430262|ZNF652	ENSG00000198740|ENST00000430262|ZNF652	ENSG00000198740|ENST00000430262|ZNF652	MULTI-SECPEP	A375_MHC_IP_R1	1	372.96038818359375	3	373.527782	1117.56152	0.28745	0.00010737	1.1205	0.00041853	1.4079	0.0005259	373.52800087866945	19.902	0.65964	19.902	19.42	20.079	0					13	12	2	0	0	0	0.99606	1	5071	5071		0.45452	0.27301	1	892710			19013	9312	13680	13784	18626	18626					0.007439125385189982
GVSTLHGIRAW	11	Unmodified	_GVSTLHGIRAW_					0	0	0		ENSG00000183072|ENST00000329198|NKX2-5	ENSG00000183072|ENST00000329198|NKX2-5	ENSG00000183072|ENST00000329198|NKX2-5	MULTI-SECPEP	A375_MHC_IP_R1	1	400.2900695800781	3	399.556007	1195.64619	-0.30839	-0.00012322	0.35992	0.00014381	0.051526	2.0588E-05	399.5561188888238	52.539	0.55875	52.539	52.237	52.796	0					30	10	4	0	0	0	0.12693	1	18668	18668		43.477	27.202	1	9835200			19014	8463	13681	13785	18627	18627					0.05619327865792911
GVSTLHGIRAW	11	Unmodified	_GVSTLHGIRAW_					0	0	0		ENSG00000183072|ENST00000329198|NKX2-5	ENSG00000183072|ENST00000329198|NKX2-5	ENSG00000183072|ENST00000329198|NKX2-5	MULTI-MSMS	A375_MHC_IP_R2	2	399.9559020996094	3	399.556007	1195.64619	-0.30784	-0.000123	-0.18378	-7.343E-05	-0.49162	-0.00019643	399.5559029785506	51.676	0.66264	52.429	52.169	52.831	0.75225					27	12	3	0	0	0	0.17512	1	19426	19426		57.204	37.578	1	10401000			19015	8463	13681	13785	18628	18628					0.05619327865792911
GVSTPVTP	8	Unmodified	_GVSTPVTP_					0	0	0			REV__SALL3|p.Q1022Sfs*4|1|0.58|ENSG00000256463|chr18:78995055-78995055|C/-|frameshift_variant	REV__SALL3|p.Q1022Sfs*4|1|0.58|ENSG00000256463|chr18:78995055-78995055|C/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	379.2611083984375	2	379.208161	756.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.617	1	33.354	32.854	33.854	0.73692								0	0	0	0.16876	1	11625	11625		14.582	0	1		+		19016	22882	13682	13786	18629	18629					0.013824490519937171
GVSVKSLKIRL	11	Unmodified	_GVSVKSLKIRL_					0	0	0		ENST00000498107.5_2_7:141438265-141438945:+|nuORF	ENST00000498107.5_2_7:141438265-141438945:+|nuORF	ENST00000498107.5_2_7:141438265-141438945:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	400.9521484375	3	400.599324	1198.77614	-0.35996	-0.0001442	0.015454	6.1908E-06	-0.34451	-0.00013801	400.5992939522498	20.341	2.0788	20.952	20.197	22.276	0.61029					116	40	5	0	0	0	0.73658	1	6150	6150		2.6312	0.88896	1	56894000			19017	12755	13683	13787	18630	18630					0.18470504144943334
GVSVKYWK	8	Unmodified	_GVSVKYWK_					0	0	0		ENSG00000150627|ENST00000508596|WDR17;nc|ENSG00000150627|Q8IZU2|WDR17	ENSG00000150627|ENST00000508596|WDR17	ENSG00000150627|ENST00000508596|WDR17	MULTI-SECPEP	A375_MHC_IP_R1	1	483.6377258300781	2	483.774003	965.533452	-0.27446	-0.00013278	0.25207	0.00012195	-0.022389	-1.0831E-05	483.7740620747611	38.602	0.35718	38.602	38.423	38.78	0					10	6	2	0	0	0	0.96266	1	13175	13175		3.9444	0	1	5333300			19018	5852	13684	13788	18631	18631					0.04930679139749827
GVSVNVPTPE	10	Unmodified	_GVSVNVPTPE_					0	0	0		ENST00000592698.5_2_16:4776816-4784259:-|nuORF;nc|ENSG00000168096|Q6ZW76-2|ANKS3;ENSG00000168096|ENST00000304283|ANKS3	ENST00000592698.5_2_16:4776816-4784259:-|nuORF	ENST00000592698.5_2_16:4776816-4784259:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	500.6759338378906	2	499.761289	997.508025	-0.58626	-0.00029299	-0.13307	-6.6505E-05	-0.71933	-0.00035949	499.7613158686879	27.912	0.60399	27.912	27.735	28.339	0					28	11	3	0	0	0	0.6502	1	8603	8603		17.113	1.2657	1	10429000			19019	7265	13685	13789	18632	18632					0.009171598266675574
GVSVNVPTPE	10	Unmodified	_GVSVNVPTPE_					0	0	0		ENST00000592698.5_2_16:4776816-4784259:-|nuORF;nc|ENSG00000168096|Q6ZW76-2|ANKS3;ENSG00000168096|ENST00000304283|ANKS3	ENST00000592698.5_2_16:4776816-4784259:-|nuORF	ENST00000592698.5_2_16:4776816-4784259:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	500.6766052246094	2	499.761289	997.508025	-0.50176	-0.00025076	-0.079979	-3.997E-05	-0.58173	-0.00029073	499.76120571404323	27.273	0.61014	27.951	27.741	28.351	0.67857					24	11	3	0	0	0	0.6502	1	9344	9344		17.113	1.2657	1	8256300			19020	7265	13685	13789	18633	18633					0.009171598266675574
GVSVSDLCV	9	Unmodified	_GVSVSDLCV_					0	0	0		ENST00000456504.5_1_15:94858078-95022260:+|nuORF;nc|ENSG00000140563|Q6DN12-2|MCTP2;ENSG00000140563|ENST00000357742|MCTP2;nc|ENSG00000140563|Q6DN12-3|MCTP2;nc|ENSG00000140563|Q6DN12-4|MCTP2	ENST00000456504.5_1_15:94858078-95022260:+|nuORF	ENST00000456504.5_1_15:94858078-95022260:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	878.471923828125	1	878.428795	877.421518	0.1095	9.6189E-05	-0.25759	-0.00022628	-0.14809	-0.00013009	878.428613298731	69.853	0.76009	69.853	69.529	70.289	0					27	14	3	0	0	0	0.5339	1	25248	25248		18.135	2.2878	1	5926500			19021	5170	13686	13790	18634	18634					-0.02209542999560199
GVSVVRRERF	10	Unmodified	_GVSVVRRERF_					0	0	0			REV__ENST00000451734.1_2_2:122494382-122494481:-|nuORF	REV__ENST00000451734.1_2_2:122494382-122494481:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	402.1321105957031	3	402.235156	1203.68364	-0.1138	-4.5775E-05	-2.599	-0.0010454	-2.7128	-0.0010912	402.2335952168812	39.317	0.30531	40.092	39.914	40.219	0.77451					7	5	2	0	0	0	0.91328	1	14524	14524		8.9762	0	1	913420	+		19022	24894	13687	13791	18635	18635					0.08994419131408904
GVSVVSNN	8	Unmodified	_GVSVVSNN_					0	0	0		ENST00000498090.1_1_2:100623057-100623988:-|nuORF	ENST00000498090.1_1_2:100623057-100623988:-|nuORF	ENST00000498090.1_1_2:100623057-100623988:-|nuORF	MSMS	A375_MHC_IP_R2	2	388.13970947265625	2	388.200867	774.387182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.423	1	34.175	33.675	34.675	0.75225								0	0	0	0.16876	1	11973	11973		32.117	8.9685	1				19023	12754	13688	13792	18636	18636					-0.009036230961442016
GVSVYQYGSA	10	Unmodified	_GVSVYQYGSA_					0	0	0		ENSG00000170915|ENST00000442253|PAQR8	ENSG00000170915|ENST00000442253|PAQR8	ENSG00000170915|ENST00000442253|PAQR8	MSMS	A375_MHC_IP_R1	1	515.8124389648438	2	515.745639	1029.47673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.466	1	21.466	20.966	21.966	0								0	0	0	0.15531	1	5649	5649		3.5965	1.2938	1				19024	7559	13689	13793	18637	18637					-0.03683413207409103
GVSYVFDLIED	11	Unmodified	_GVSYVFDLIED_					0	0	0			REV__CRISP2|p.G124S|1|0.27|ENSG00000124490|chr6:49698409-49698409|C/T|missense_variant	REV__CRISP2|p.G124S|1|0.27|ENSG00000124490|chr6:49698409-49698409|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	418.9629211425781	3	419.539688	1255.59723	-0.15887	-6.6653E-05	-1.2148	-0.00050968	-1.3737	-0.00057633	419.53978936546696	23.813	0.15159	23.813	23.687	23.838	0					4	2	2	0	0	0	0.95135	1	6625	6625		21.799	10.168	1	620880	+		19025	15918	13690	13794	18638	18638					-0.020340500044767396
GVTALQLP	8	Unmodified	_GVTALQLP_					0	0	0		ENST00000560168.1_1_19:46269581-46272089:-|nuORF;ENSG00000177045|ENST00000317578|SIX5	ENST00000560168.1_1_19:46269581-46272089:-|nuORF;ENSG00000177045|ENST00000317578|SIX5	ENSG00000177045|ENST00000317578|SIX5	MULTI-MSMS	A375_MHC_IP_R2	2	798.869873046875	1	798.47198	797.464704	-0.84832	-0.00067736	-0.88888	-0.00070974	-1.7372	-0.0013871	798.4711496101905	92.426	1.0633	93.165	92.278	93.341	0.73902					25	20	2	0	0	0	0.24409	1	35079	35079		63.563	0	1	3250100			19026	13487;8058	13691	13795	18639	18639					0.057870148400297694
GVTASLLAI	9	Unmodified	_GVTASLLAI_					0	0	0		nc|ENSG00000188162|Q6ZRI0|OTOG;ENSG00000188162|ENST00000399397|OTOG;nc|ENSG00000188162|Q6ZRI0-2|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	MULTI-MSMS	A375_MHC_IP_R1	1	845.96240234375	1	844.513845	843.506569	-0.53725	-0.00045372	-0.11955	-0.00010096	-0.6568	-0.00055468	844.5136400779354	84.826	0.56151	84.826	84.545	85.107	0					24	10	3	0	0	0	0.32899	1	31150	31150		28.487	1.6032	1	9513200			19027	8889	13692	13796	18640	18640					0.07855570528568023
GVTDSSLEY	9	Unmodified	_GVTDSSLEY_					0	0	0		ENSG00000179399|ENST00000377067|GPC5;GPC5|p.P181S|1|0.15|ENSG00000179399|chr13:91693402-91693402|C/T|missense_variant;GPC5|p.E192K|1|0.44|ENSG00000179399|chr13:91693435-91693435|G/A|missense_variant	ENSG00000179399|ENST00000377067|GPC5	ENSG00000179399|ENST00000377067|GPC5	MULTI-MSMS	A375_MHC_IP_R1	1	486.18756103515625	2	485.72183	969.429106	0.19967	9.6986E-05	0.26426	0.00012836	0.46394	0.00022534	485.7220477227906	69.737	1.3216	69.737	69.07	70.392	0					64	25	4	0	0	0	0.46038	1	25416	25416		21.747	3.6003	1	21512000			19028	8228	13693	13797	18641	18641					-0.05683112198289564
GVTDSSLEY	9	Unmodified	_GVTDSSLEY_					0	0	0		ENSG00000179399|ENST00000377067|GPC5;GPC5|p.P181S|1|0.15|ENSG00000179399|chr13:91693402-91693402|C/T|missense_variant;GPC5|p.E192K|1|0.44|ENSG00000179399|chr13:91693435-91693435|G/A|missense_variant	ENSG00000179399|ENST00000377067|GPC5	ENSG00000179399|ENST00000377067|GPC5	MULTI-MSMS	A375_MHC_IP_R2	2	486.1867980957031	2	485.72183	969.429106	-0.49814	-0.00024196	0.3561	0.00017297	-0.14204	-6.8991E-05	485.7221309915913	68.902	1.2149	69.637	69.07	70.285	0.73511					62	23	4	0	0	0	0.25276	1	26193	26193		34.102	1.797	1	20430000			19029	8228	13693	13797	18642	18642					-0.05683112198289564
GVTEFLHDG	9	Unmodified	_GVTEFLHDG_					0	0	0		ENST00000343470.8_2_4:4285494-4291773:-|nuORF	ENST00000343470.8_2_4:4285494-4291773:-|nuORF	ENST00000343470.8_2_4:4285494-4291773:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	974.9371948242188	1	974.457787	973.45051	-0.32872	-0.00032033	-0.29148	-0.00028403	-0.6202	-0.00060436	974.457448503494	57.664	0.65915	58.413	58.12	58.779	0.74895					29	12	3	0	0	0	0.78348	1	21735	21735		4.3292	0	1	5322200			19030	10885	13694	13798	18643	18643					-0.037276823789056834
GVTELKCP	8	Unmodified	_GVTELKCP_					0	0	0			REV__ENSG00000145781|ENST00000274458|COMMD10	REV__ENSG00000145781|ENST00000274458|COMMD10	MSMS	A375_MHC_IP_R1	1	423.6212158203125	2	423.723121	845.431689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.25	1	104.25	103.75	104.75	0								0	0	0	0.16876	1	38280	38280		5.7604	0	1		+		19031	19492	13695	13799	18644	18644					0.0027906472569156904
GVTIKPLKMKR	11	Unmodified	_GVTIKPLKMKR_					0	0	0		TMPRSS11E|p.S254L|1|0.19|ENSG00000087128|chr4:68477422-68477422|C/T|missense_variant	TMPRSS11E|p.S254L|1|0.19|ENSG00000087128|chr4:68477422-68477422|C/T|missense_variant	TMPRSS11E|p.S254L|1|0.19|ENSG00000087128|chr4:68477422-68477422|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	635.78466796875	2	635.905025	1269.7955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.25	1	102.01	101.51	102.51	0.76428								0	0	0	0.16297	1	38379	38379		3.2813	0.28607	1				19032	29367	13696	13800	18645	18645					0.1713913716416755
GVTISRGAR	9	Unmodified	_GVTISRGAR_					0	0	0			REV__tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1	REV__tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	459.1698913574219	2	458.769783	915.525013	0.22539	0.0001034	-0.23103	-0.00010599	-0.0056349	-2.5851E-06	458.76952889947813	114.54	1.4715	114.54	114.06	115.53	0					40	28	2	0	0	0	0.8028	1	42034	42034		1.8442	1.1539	1	3169600	+		19033	28211	13697	13801	18646	18646					0.06387125223136536
GVTISRGAR	9	Unmodified	_GVTISRGAR_					0	0	0			REV__tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1	REV__tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	459.16973876953125	2	458.769783	915.525013	-0.14556	-6.6777E-05	-0.13072	-5.9969E-05	-0.27627	-0.00012675	458.7696353921811	113.85	0.95671	114.56	114.28	115.24	0.70985					31	18	2	0	0	0	0.8028	1	43055	43055		1.8442	0	1	3938200	+		19034	28211	13697	13801	18647	18647					0.06387125223136536
GVTISRGAR	9	Unmodified	_GVTISRGAR_					0	0	0			REV__tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1	REV__tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	459.1698303222656	2	458.769783	915.525013	-0.13324	-6.1127E-05	0.091491	4.1973E-05	-0.041751	-1.9154E-05	458.76970698635427	113.48	0.61291	114.19	113.72	114.33	0.70985					16	11	2	0	0	0	0.8028	1	42825	42825		4.3292	1.7518	1	2143800	+		19035	28211	13697	13801	18648	18648					0.06387125223136536
GVTIYEDLRRK	11	Unmodified	_GVTIYEDLRRK_					0	0	0		TOM1|p.V137G|1|0.29|ENSG00000100284|chr22:35323539-35323539|T/G|missense_variant	TOM1|p.V137G|1|0.29|ENSG00000100284|chr22:35323539-35323539|T/G|missense_variant	TOM1|p.V137G|1|0.29|ENSG00000100284|chr22:35323539-35323539|T/G|missense_variant	MSMS	A375_MHC_IP_R2	2	675.6510009765625	2	675.380426	1348.7463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133	1	133.16	132.66	133.66	0.16487								0	0	0	0.16124	1	52323	52323		12.241	5.1389	1				19036	29375	13698	13802	18649	18649					0.08587520408900673
GVTLPQECILS	11	Unmodified	_GVTLPQECILS_					0	0	0		ENST00000491154.1_1_X:153666748-153668487:+|nuORF	ENST00000491154.1_1_X:153666748-153668487:+|nuORF	ENST00000491154.1_1_X:153666748-153668487:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	581.72705078125	2	580.305007	1158.59546	-0.46235	-0.0002683	0.69697	0.00040446	0.23463	0.00013616	580.305390335839	133.18	0.35736	133.18	133.05	133.41	0					15	6	4	0	0	0	0.73332	1	51308	51308		5.7319	1.4026	1	10937000			19037	12655	13699	13803	18650	18650					0.022506177059312904
GVTLWETF	8	Unmodified	_GVTLWETF_					0	0	0		ENSG00000162733|ENST00000367921|DDR2	ENSG00000162733|ENST00000367921|DDR2	ENSG00000162733|ENST00000367921|DDR2	MSMS	A375_MHC_IP_R2	2	476.59796142578125	2	476.742368	951.470183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.045	1	72.779	72.279	73.279	0.73421								0	0	0	0.16876	1	27338	27338		5.7604	1.0044	1				19038	6582	13700	13804	18651	18651					-0.007493063681408785
GVTLYLLQ	8	Unmodified	_GVTLYLLQ_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	A375_MHC_IP_R2	2	908.9129028320312	1	906.529495	905.522219	-0.27054	-0.00024525	0.41379	0.00037511	0.14325	0.00012986	906.5297088143404	93.441	0.96541	94.185	93.752	94.717	0.74474					40	18	3	0	0	0	0.7779	1	35423	35423		2.5775	0.27475	1	15783000			19039	2311	13701	13805	18652	18652					0.06567857045627079
GVTRIIFSL	9	Unmodified	_GVTRIIFSL_					0	0	0			REV__nc|ENSG00000113441|Q9UIQ6-3|LNPEP	REV__nc|ENSG00000113441|Q9UIQ6-3|LNPEP	MSMS	A375_MHC_IP_R1	1	503.58685302734375	2	503.30821	1004.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.56	1	113.56	113.06	114.06	0								0	0	0	0.15486	1	41626	41626		2.0598	0.21551	1		+		19040	17780	13702	13806	18653	18653					0.09974923719619255
GVTRPGVR	8	Unmodified	_GVTRPGVR_					0	0	0		ENST00000413137.6_1_22:29663789-29663912:-|nuORF	ENST00000413137.6_1_22:29663789-29663912:-|nuORF	ENST00000413137.6_1_22:29663789-29663912:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	421.6540222167969	2	421.253769	840.492984	0.079503	3.3491E-05	-0.090765	-3.8235E-05	-0.011262	-4.7441E-06	421.2536977800433	115.07	0.71375	115.76	115.47	116.19	0.68999					22	13	2	0	0	0	0.77702	1	43390	43390		5.7604	5.7604	1	1601000			19041	11653	13703	13807	18654	18654					0.06635757539993392
GVTRPGVR	8	Unmodified	_GVTRPGVR_					0	0	0		ENST00000413137.6_1_22:29663789-29663912:-|nuORF	ENST00000413137.6_1_22:29663789-29663912:-|nuORF	ENST00000413137.6_1_22:29663789-29663912:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	421.253769	840.492984	0.41074	0.00017302	-0.32409	-0.00013652	0.086646	3.65E-05	421.25356869392647	115.8	0.76421	115.8	115.32	116.09	0	0.020507	-6.5876E-05	NaN	5.7604	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1590600			19042	11653	13703	13807							0.06635757539993392
GVTSDVEVNEK	11	Unmodified	_GVTSDVEVNEK_					0	0	0		ENST00000388966.4_1_12:8169981-8170332:-|nuORF	ENST00000388966.4_1_12:8169981-8170332:-|nuORF	ENST00000388966.4_1_12:8169981-8170332:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	393.63140869140625	3	392.862942	1175.567	-0.63483	-0.0002494	-1.25	-0.00049109	-1.8849	-0.0007405	393.1966955196828	34.025	0.25328	34.778	34.55	34.803	0.75225					5	4	2	0	0	0	0.9889	1	12165	12165		2.2527	0	1	1254800			19043	11395	13704	13808	18655	18655					-0.013764086696710365
GVTTLLAP	8	Unmodified	_GVTTLLAP_					0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	MSMS	A375_MHC_IP_R1	1	386.2806091308594	2	386.234179	770.453805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.918	1	38.918	38.418	39.418	0								0	0	0	0.16876	1	13250	13250		5.7604	0	1		+		19044	16329	13705	13809	18656	18656					0.05939612465749633
GVTVTESDSY	10	Unmodified	_GVTVTESDSY_					0	0	0		ENSG00000177103|ENST00000651296|DSCAML1;nc|ENSG00000177103|Q8TD84-2|DSCAML1	ENSG00000177103|ENST00000651296|DSCAML1	ENSG00000177103|ENST00000651296|DSCAML1	MULTI-MSMS	A375_MHC_IP_R2	2	529.1707153320312	2	529.237844	1056.46113	-0.80847	-0.00042788	-0.27844	-0.00014736	-1.0869	-0.00057523	529.2376720221406	61.923	0.86066	62.666	62.319	63.18	0.74263					44	16	4	0	0	0	0.70329	1	23371	23371		10.824	10.824	1	11931000			19045	8062	13706	13810	18657	18657					-0.06483744515116996
GVTWLEPDY	9	Unmodified	_GVTWLEPDY_					0	0	0		ENSG00000134247|ENST00000393203|PTGFRN	ENSG00000134247|ENST00000393203|PTGFRN	ENSG00000134247|ENST00000393203|PTGFRN	MSMS	A375_MHC_IP_R1	1	540.1849975585938	2	540.25584	1078.49713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.638	1	59.638	59.138	60.138	0								0	0	0	0.14677	1	21454	21454		26.884	5.137	1				19046	4558	13707	13811	18658	18658					-0.03898242547643349
GVVAAWKH	8	Unmodified	_GVVAAWKH_					0	0	0			REV__ENSG00000059691|ENST00000263985|GATB	REV__ENSG00000059691|ENST00000263985|GATB	MULTI-MSMS	A375_MHC_IP_R2	2	434.64306640625	2	434.245412	866.476272	-0.080505	-3.4959E-05	-1.0755	-0.00046702	-1.156	-0.00050198	434.24335399238106	111.28	2.2453	112.02	111.19	113.44	0.73692					136	43	5	0	0	0	0.77781	2	42193	42193;42452		2.8892	0.31174	1	13016000	+		19047	16442	13708	13812	18659;18660	18659					0.03769256654027231
GVVARNRA	8	Unmodified	_GVVARNRA_					0	0	0		ENSG00000144535|ENST00000325385|DIS3L2;nc|ENSG00000144535|Q8IYB7-2|DIS3L2;nc|ENSG00000144535|Q8IYB7-3|DIS3L2;ENST00000464554.5_1_2:232880330-232952439:+|nuORF;nc|ENSG00000144535|Q8IYB7-4|DIS3L2;nc|ENSG00000144535|Q8IYB7-5|DIS3L2	ENSG00000144535|ENST00000325385|DIS3L2	ENSG00000144535|ENST00000325385|DIS3L2	MULTI-MSMS	A375_MHC_IP_R1	1	842.5172729492188	1	842.49551	841.488233	-0.31133	-0.00026229	-0.35434	-0.00029853	-0.66567	-0.00056082	842.4950996578197	98.532	0.61373	98.532	98.3	98.914	0					14	11	2	0	0	0	0.77781	1	36191	36191		2.8892	0	1	1441100			19048	5491	13709	13813	18661	18661					0.06114873397223164
GVVARNRA	8	Unmodified	_GVVARNRA_					0	0	0		ENSG00000144535|ENST00000325385|DIS3L2;nc|ENSG00000144535|Q8IYB7-2|DIS3L2;nc|ENSG00000144535|Q8IYB7-3|DIS3L2;ENST00000464554.5_1_2:232880330-232952439:+|nuORF;nc|ENSG00000144535|Q8IYB7-4|DIS3L2;nc|ENSG00000144535|Q8IYB7-5|DIS3L2	ENSG00000144535|ENST00000325385|DIS3L2	ENSG00000144535|ENST00000325385|DIS3L2	MULTI-MATCH	A375_MHC_IP_R2	2		1	842.49551	841.488233	-0.7662	-0.00064552	-0.29109	-0.00024524	-1.0573	-0.00089077	842.4953075863243	97.968	0.35678	98.728	98.538	98.895	0.75977	0.097931	3.329E-05	NaN	2.8892	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1290400			19049	5491	13709	13813							0.06114873397223164
GVVAYLLIT	9	Unmodified	_GVVAYLLIT_					0	0	0			REV__nc|ENSG00000066230|P48764-2|SLC9A3	REV__nc|ENSG00000066230|P48764-2|SLC9A3	MSMS	A375_MHC_IP_R2	2	474.691162109375	2	474.791861	947.569169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.48	1	112.22	111.72	112.72	0.73692								0	0	0	0.15486	1	42034	42034		2.3027	0	1		+		19050	16511	13710	13814	18662	18662					0.09328716596746744
GVVCRVKY	8	Unmodified	_GVVCRVKY_					0	0	0		nc|ENSG00000006712|Q8N7H5-3|PAF1;nc|ENSG00000006712|Q8N7H5-2|PAF1;ENSG00000006712|ENST00000221265|PAF1;ENST00000597365.1_1_19:39880707-39881561:-|nuORF;ENST00000416728.3_1_19:39880170-39881561:-|nuORF;ENST00000595797.5_1_19:39880250-39881561:-|nuORF	nc|ENSG00000006712|Q8N7H5-3|PAF1	nc|ENSG00000006712|Q8N7H5-3|PAF1	MSMS	A375_MHC_IP_R1	1	462.33056640625	2	462.260205	922.505857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.378	1	19.378	18.878	19.878	0								0	0	0	0.16876	1	4767	4767		5.7604	2.8712	1				19051	926	13711	13815	18663	18663					0.04150452607859734
GVVDIFQTV	9	Unmodified	_GVVDIFQTV_					0	0	0		ENST00000588552.5_1_19:5159112-5286160:-|nuORF;nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS;nc|ENSG00000153707|P23468-2|PTPRD;nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-7|PTPRD;nc|ENSG00000153707|P23468-5|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-6|PTPRD;ENSG00000153707|ENST00000381196|PTPRD	ENST00000588552.5_1_19:5159112-5286160:-|nuORF;nc|ENSG00000153707|P23468-2|PTPRD	nc|ENSG00000153707|P23468-2|PTPRD	MULTI-SECPEP	A375_MHC_IP_R2	2	977.8848266601562	1	977.530224	976.522947	0.013882	1.357E-05	-0.50354	-0.00049222	-0.48965	-0.00047865	977.5305218243335	125.1	0.25314	125.39	125.17	125.42	0.2951					6	4	2	0	0	0	0.034037	1	48633	48633		88.954	33.451	1	10841000			19052	14689;13765	13712	13816	18664	18664					0.03374651694662134
GVVDKIDYY	9	Unmodified	_GVVDKIDYY_					0	0	0		ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	MULTI-MSMS	A375_MHC_IP_R2	2	536.7236328125	2	536.27149	1070.52843	-0.97491	-0.00052282	-0.68546	-0.00036759	-1.6604	-0.00089041	536.2715554822787	65.399	1.016	66.137	65.359	66.375	0.73811					43	19	3	0	0	0	0.29981	1	24879	24879		30.637	6.8468	1	6487400			19053	4524	13713	13817	18665	18665					-0.004016695135305781
GVVHGVATV	9	Unmodified	_GVVHGVATV_					0	0	0		nc|ENSG00000145335|P37840-2|SNCA;ENSG00000145335|ENST00000394991|SNCA;chr4:89759293-89822246|453|22.43|0.6|5.23|-|ENST00000674129|SNCA,SNCA;chr4:89729277-89758858|456|25.28|0.93|4.76|-|ENST00000674129|SNCA,SNCA	nc|ENSG00000145335|P37840-2|SNCA	nc|ENSG00000145335|P37840-2|SNCA	MULTI-MSMS	A375_MHC_IP_R1	1	420.1424865722656	2	419.742702	837.470852	0.10834	4.5477E-05	-0.25673	-0.00010776	-0.14838	-6.2282E-05	419.7425847602267	33.976	0.40554	33.976	33.848	34.253	0					11	7	2	0	0	0	0.042987	1	11185	11185		67.035	24.941	1	3406800			19054	478	13714	13818	18666	18666					0.04561533071557733
GVVHGVATV	9	Unmodified	_GVVHGVATV_					0	0	0		nc|ENSG00000145335|P37840-2|SNCA;ENSG00000145335|ENST00000394991|SNCA;chr4:89759293-89822246|453|22.43|0.6|5.23|-|ENST00000674129|SNCA,SNCA;chr4:89729277-89758858|456|25.28|0.93|4.76|-|ENST00000674129|SNCA,SNCA	nc|ENSG00000145335|P37840-2|SNCA	nc|ENSG00000145335|P37840-2|SNCA	MULTI-MSMS	A375_MHC_IP_R2	2	420.1424560546875	2	419.742702	837.470852	-0.32489	-0.00013637	0.053991	2.2663E-05	-0.2709	-0.00011371	419.74267569733354	33.265	0.35699	34.017	33.789	34.146	0.75225					11	6	2	0	0	0	0.042987	1	11920	11920		67.035	26.587	1	2535900			19055	478	13714	13818	18667	18667					0.04561533071557733
GVVIFKTKKRT	11	Unmodified	_GVVIFKTKKRT_					0	0	0			REV__tr|U7SUY9|U7SUY9_FUSNUSulfitereductase,subunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01057PE=4SV=1	REV__tr|U7SUY9|U7SUY9_FUSNUSulfitereductase,subunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01057PE=4SV=1	MSMS	A375_MHC_IP_R2	2	638.959228515625	2	638.908622	1275.80269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.62	1	87.353	86.853	87.853	0.733								0	0	0	0.1629	1	32940	32940		3.5965	2.1146	1		+		19056	28572	13715	13819	18668	18668					0.17582193036241733
GVVIVRQPKL	10	Unmodified	_GVVIVRQPKL_					0	0	0			REV__ENSG00000104951|ENST00000391826|IL4I1	REV__ENSG00000104951|ENST00000391826|IL4I1	MSMS	A375_MHC_IP_R1	1	370.2890319824219	3	370.244881	1107.71281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.842	1	21.842	21.342	22.342	0								0	0	0	0.1562	1	5796	5796		0.69767	0.19171	1		+		19057	17352	13716	13820	18669	18669					0.16326563427696783
GVVTSNPLGF	10	Unmodified	_GVVTSNPLGF_					0	0	0		ENSG00000072778|ENST00000356839|ACADVL;nc|ENSG00000072778|P49748-3|ACADVL;nc|ENSG00000072778|P49748-2|ACADVL;ENST00000578711.1_1_17:7128236-7128413:+|nuORF;ENST00000578033.1_1_17:7127960-7128413:+|nuORF;ENST00000578319.5_1_17:7127738-7128413:+|nuORF	ENSG00000072778|ENST00000356839|ACADVL	ENSG00000072778|ENST00000356839|ACADVL	MULTI-SECPEP	A375_MHC_IP_R1	1	496.3160400390625	2	495.766374	989.518196	-0.32844	-0.00016283	0.45264	0.0002244	0.12421	6.1577E-05	495.76632226505706	104.67	0.30438	104.67	104.54	104.84	0					8	5	2	0	0	0	0.071695	1	38438	38438		88.954	41.205	1	988600			19058	1546	13717	13821	18670	18670					0.023017675519099612
GVVYTSHLQLK	11	Unmodified	_GVVYTSHLQLK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000196862|ENST00000408999|RGPD4	MSMS	A375_MHC_IP_R1	1	415.6387634277344	3	415.571434	1243.69247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.81	1	28.81	28.31	29.31	0								0	0	0	0.1615	1	8936	8936		10.899	0.37148	1				19059	8657;9090;6015	13718	13822	18671	18671					0.0803734797721063
GVWAAYDP	8	Unmodified	_GVWAAYDP_					0	0	0		nc|ENSG00000165861|Q9HBF4-3|ZFYVE1;ENSG00000165861|ENST00000556143|ZFYVE1	nc|ENSG00000165861|Q9HBF4-3|ZFYVE1	nc|ENSG00000165861|Q9HBF4-3|ZFYVE1	MSMS	A375_MHC_IP_R2	2	439.77325439453125	2	439.705786	877.397018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.252	1	22.871	22.371	23.371	0.61932								0	0	0	0.16876	1	7057	7057		5.7604	1.0044	1				19060	6995	13719	13823	18672	18672					-0.046584350907664884
GVWGGAAL	8	Unmodified	_GVWGGAAL_					0	0	0			REV__ENST00000003100.12_1_7:91761115-91763805:-|nuORF	REV__ENST00000003100.12_1_7:91761115-91763805:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	366.09808349609375	2	365.697764	729.380974	0.22918	8.381E-05	0.65313	0.00023885	0.88231	0.00032266	365.69795155091026	74.717	0.50785	74.717	74.451	74.958	0					15	9	2	0	0	0	0.77781	1	27218	27218		2.8892	0	1	2054700	+		19061	23004	13720	13824	18673	18673					0.005459034630007409
GVWGGAAL	8	Unmodified	_GVWGGAAL_					0	0	0			REV__ENST00000003100.12_1_7:91761115-91763805:-|nuORF	REV__ENST00000003100.12_1_7:91761115-91763805:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	366.097900390625	2	365.697764	729.380974	0.0051488	1.8829E-06	0.60266	0.00022039	0.60781	0.00022228	365.6979268531795	66.988	0.86383	67.724	67.342	68.205	0.73631					42	16	4	0	0	0	0.77781	1	25326	25326		2.8892	0	1	27660000	+		19062	23004	13720	13824	18674	18674					0.005459034630007409
GVWGGAAL	8	Unmodified	_GVWGGAAL_					0	0	0			REV__ENST00000003100.12_1_7:91761115-91763805:-|nuORF	REV__ENST00000003100.12_1_7:91761115-91763805:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	365.697764	729.380974	0.22918	8.381E-05	0.65313	0.00023885	0.88231	0.00032266	365.69795155091026	74.717	0.50785	74.717	74.451	74.958	0	0.043759	-5.3242E-05	NaN	2.8892	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2054700	+		19063	23004	13720	13824							0.005459034630007409
GVWGGAAL	8	Unmodified	_GVWGGAAL_					0	0	0			REV__ENST00000003100.12_1_7:91761115-91763805:-|nuORF	REV__ENST00000003100.12_1_7:91761115-91763805:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	365.697764	729.380974	-0.15123	-5.5305E-05	1.0292	0.00037639	0.87801	0.00032109	365.6980762419011	67.78	0.96299	67.78	67.449	68.412	0	0.027615	0.0001621	NaN	2.8892	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23291000	+		19064	23004	13720	13824							0.005459034630007409
GVWGGAAL	8	Unmodified	_GVWGGAAL_					0	0	0			REV__ENST00000003100.12_1_7:91761115-91763805:-|nuORF	REV__ENST00000003100.12_1_7:91761115-91763805:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	365.697764	729.380974	0.0051488	1.8829E-06	0.60266	0.00022039	0.60781	0.00022228	365.6979268531795	66.988	0.86383	67.724	67.342	68.205	0.73631	-0.027615	-0.0001499	NaN	2.8892	42	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27660000	+		19065	23004	13720	13824							0.005459034630007409
GVWLVVQSSLA	11	Unmodified	_GVWLVVQSSLA_					0	0	0			REV__nc|ENSG00000157637|Q9HBR0-3|SLC38A10	REV__nc|ENSG00000157637|Q9HBR0-3|SLC38A10	MULTI-MSMS	A375_MHC_IP_R1	1	387.6239013671875	3	386.888763	1157.64446	0.25637	9.9189E-05	0.29346	0.00011353	0.54983	0.00021272	386.88868106966413	57.446	0.76341	57.446	57.059	57.822	0					36	14	3	0	0	0	0.72649	1	20525	20525		6.6235	0	1	7200200	+		19066	20038	13721	13825	18675	18675					0.07194274057201255
GVWPASPL	8	Unmodified	_GVWPASPL_					0	0	0			REV__ENST00000289228.6_1_2:98272641-98272800:-|nuORF	REV__ENST00000289228.6_1_2:98272641-98272800:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	413.6380920410156	2	413.726521	825.438489	0.15672	6.4841E-05	-0.12942	-5.3544E-05	0.027305	1.1297E-05	413.72649169255965	95.084	0.35757	95.084	94.802	95.16	0					11	6	2	0	0	0	0.77702	1	34864	34864		5.7604	0.52976	1	922770	+		19067	23350	13722	13826	18676	18676					0.018787456685686266
GVWPASPL	8	Unmodified	_GVWPASPL_					0	0	0			REV__ENST00000289228.6_1_2:98272641-98272800:-|nuORF	REV__ENST00000289228.6_1_2:98272641-98272800:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	413.726521	825.438489	0.15672	6.4841E-05	-0.12942	-5.3544E-05	0.027305	1.1297E-05	413.72649169255965	95.084	0.35757	95.084	94.802	95.16	0	0.069955	-3.2075E-05	NaN	5.7604	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	922770	+		19068	23350	13722	13826							0.018787456685686266
GVWPASPL	8	Unmodified	_GVWPASPL_					0	0	0			REV__ENST00000289228.6_1_2:98272641-98272800:-|nuORF	REV__ENST00000289228.6_1_2:98272641-98272800:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	413.726521	825.438489	0.20929	8.6588E-05	-0.055229	-2.285E-05	0.15406	6.3738E-05	413.72651762732903	94.199	0.45496	94.944	94.616	95.071	0.74474	-0.069955	2.9314E-05	NaN	5.7604	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1151200	+		19069	23350	13722	13826							0.018787456685686266
GVWRFKENV	9	Unmodified	_GVWRFKENV_					0	0	0		FMO2|p.G38E|1|0.12|ENSG00000094963|chr1:171185826-171185826|G/A|missense_variant;ENST00000209929.9_1_1:171154426-171178089:+|nuORF;ENSG00000094963|ENST00000209929|FMO2	FMO2|p.G38E|1|0.12|ENSG00000094963|chr1:171185826-171185826|G/A|missense_variant	FMO2|p.G38E|1|0.12|ENSG00000094963|chr1:171185826-171185826|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	379.6239929199219	3	378.873336	1133.59818	-0.22864	-8.6625E-05	2.573	0.00097482	2.3443	0.0008882	379.2086311727698	20.297	0.2056	20.907	20.752	20.958	0.61029					5	3	2	0	0	0	0.78753	1	6246	6246		4.897	2.2658	1	793600			19070	2030	13723	13827	18677	18677					0.03672253945751436
GVWRRRFKKRQ	11	Unmodified	_GVWRRRFKKRQ_					0	0	0			REV__nc|ENSG00000106484|Q5EB52-3|MEST	REV__nc|ENSG00000106484|Q5EB52-3|MEST	MSMS	A375_MHC_IP_R1	1	758.9535522460938	2	758.957835	1515.90112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.59	1	101.59	101.09	102.09	0								0	0	0	0.16353	1	37333	37333		0.35063	0.043601	1		+		19071	17453	13724	13828	18678	18678					0.16380234124653725
GVWTGEQF	8	Unmodified	_GVWTGEQF_					0	0	0			REV__ENSG00000197892|ENST00000524189|KIF13B	REV__ENSG00000197892|ENST00000524189|KIF13B	MULTI-SECPEP	A375_MHC_IP_R2	2	462.690673828125	2	462.216517	922.418482	-0.64513	-0.00029819	1.319	0.00060965	0.67384	0.00031146	462.2168856788211	55.053	0.40863	55.804	55.575	55.984	0.75075					10	7	2	0	0	0	0.97144	1	20756	20756		9.3474	4.5914	1	1002300	+		19072	22327	13725	13829	18679	18679					-0.04583050062035454
GVWTGEQF	8	Unmodified	_GVWTGEQF_					0	0	0			REV__ENSG00000197892|ENST00000524189|KIF13B	REV__ENSG00000197892|ENST00000524189|KIF13B	MULTI-MATCH	A375_MHC_IP_R1	1		2	462.216517	922.418482	-0.16813	-7.7714E-05	0.45465	0.00021015	0.28651	0.00013243	462.21674869374885	55.804	0.25437	55.804	55.687	55.941	0	0.00038546	-0.00011906	NaN	9.3474	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	923860	+		19073	22327	13725	13829							-0.04583050062035454
GVYAGREHFV	10	Unmodified	_GVYAGREHFV_					0	0	0		ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	MULTI-MSMS	A375_MHC_IP_R1	1	379.26129150390625	3	378.861207	1133.56179	0.33458	0.00012676	0.72751	0.00027562	1.0621	0.00040238	378.8614546467337	33.436	0.55812	33.436	33.09	33.648	0					16	10	2	0	0	0	0.25271	1	10915	10915		30.703	18.529	1	8334400			19074	1191	13726	13830	18680	18680					0.0003537704901646066
GVYAGREHFV	10	Unmodified	_GVYAGREHFV_					0	0	0		ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	MULTI-SECPEP	A375_MHC_IP_R2	2	378.9294128417969	3	378.861207	1133.56179	0.048167	1.8249E-05	1.1957	0.00045301	1.2439	0.00047126	378.8617007054614	32.534	0.50801	33.271	32.96	33.468	0.73691					22	9	3	0	0	0	0.64716	1	11580	11580		14.957	4.0582	1	8947800			19075	1191	13726	13830	18681	18681					0.0003537704901646066
GVYDGEEHSV	10	Unmodified	_GVYDGEEHSV_					0	0	0		ENSG00000099399|ENST00000378988|MAGEB2	ENSG00000099399|ENST00000378988|MAGEB2	ENSG00000099399|ENST00000378988|MAGEB2	MULTI-SECPEP	A375_MHC_IP_R1	1	545.6800537109375	2	546.235635	1090.45672	-0.43548	-0.00023787	-1.3465	-0.00073548	-1.7819	-0.00097335	546.2351264721511	28.649	0.25403	28.649	28.491	28.745	0					6	4	2	0	0	0	0.78945	1	8887	8887		25.399	16.806	1	1290700			19076	2078	13727	13831	18682	18682					-0.08489208938021875
GVYDGREHTV	10	Unmodified	_GVYDGREHTV_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;chrX:151919037-151923453|150|252.27|0.24|10.04|+|ENST00000431971|MAGEA4,MAGEA4;chrX:151914958-151923453|148|308.46|0.33|9.87|+|ENST00000441865|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-MSMS	A375_MHC_IP_R1	1	567.1729125976562	2	566.772719	1131.53089	-0.12126	-6.8729E-05	-0.40165	-0.00022764	-0.52292	-0.00029637	566.7725037136711	21.429	0.76288	21.429	21.148	21.911	0					39	14	5	0	0	0	0.0070192	3	5615	5583;5615;5685		132.13	84.403	1	122740000			19077	520	13728	13832	18683;18684;18685	18684					-0.0296182105587377
GVYDGREHTV	10	Unmodified	_GVYDGREHTV_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;chrX:151919037-151923453|150|252.27|0.24|10.04|+|ENST00000431971|MAGEA4,MAGEA4;chrX:151914958-151923453|148|308.46|0.33|9.87|+|ENST00000441865|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-MSMS	A375_MHC_IP_R1	1	567.1717529296875	2	566.772719	1131.53089	-0.44421	-0.00025177	-0.12387	-7.0205E-05	-0.56808	-0.00032197	566.772641575314	23.253	0.86108	23.253	22.723	23.584	0					29	16	4	0	0	0	0.0070192	1	6339	6339		132.13	84.386	1	24985000			19078	520	13728	13832	18686	18686					-0.0296182105587377
GVYDGREHTV	10	Unmodified	_GVYDGREHTV_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;chrX:151919037-151923453|150|252.27|0.24|10.04|+|ENST00000431971|MAGEA4,MAGEA4;chrX:151914958-151923453|148|308.46|0.33|9.87|+|ENST00000441865|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-SECPEP	A375_MHC_IP_R1	1	378.5841369628906	3	378.184238	1131.53089	0.58843	0.00022253	-0.55521	-0.00020997	0.033217	1.2562E-05	378.1840911067035	21.458	0.96487	21.458	21.148	22.113	0					58	18	6	0	0	0	0.33054	1	5602	5602		55.235	41.716	1	374080000			19079	520	13728	13832	18687	18687					-0.0296182105587377
GVYDGREHTV	10	Unmodified	_GVYDGREHTV_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;chrX:151919037-151923453|150|252.27|0.24|10.04|+|ENST00000431971|MAGEA4,MAGEA4;chrX:151914958-151923453|148|308.46|0.33|9.87|+|ENST00000441865|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-SECPEP	A375_MHC_IP_R1	1	378.5841979980469	3	378.184238	1131.53089	0.31085	0.00011756	0.048226	1.8238E-05	0.35907	0.0001358	378.18423965335836	23.247	1.6226	23.247	22.013	23.635	0					58	31	4	0	0	0	0.56504	1	6014	6014		35.612	19.046	1	64396000			19080	520	13728	13832	18688	18688					-0.0296182105587377
GVYDGREHTV	10	Unmodified	_GVYDGREHTV_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;chrX:151919037-151923453|150|252.27|0.24|10.04|+|ENST00000431971|MAGEA4,MAGEA4;chrX:151914958-151923453|148|308.46|0.33|9.87|+|ENST00000441865|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-MSMS	A375_MHC_IP_R2	2	567.6945190429688	2	566.772719	1131.53089	-0.70908	-0.00040189	-0.178	-0.00010089	-0.88708	-0.00050277	566.7726175332696	19.959	1.0129	20.57	20.197	21.21	0.61029					63	19	4	0	0	0	0.0040472	2	6177	6107;6177		132.13	78.818	1	40958000			19081	520	13728	13832	18689;18690	18690					-0.0296182105587377
GVYDGREHTV	10	Unmodified	_GVYDGREHTV_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;chrX:151919037-151923453|150|252.27|0.24|10.04|+|ENST00000431971|MAGEA4,MAGEA4;chrX:151914958-151923453|148|308.46|0.33|9.87|+|ENST00000441865|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-MSMS	A375_MHC_IP_R2	2	567.6735229492188	2	566.772719	1131.53089	-0.74266	-0.00042092	0.043341	2.4564E-05	-0.69931	-0.00039635	566.7725772337842	22.815	0.40903	23.445	23.265	23.675	0.63014					18	7	4	0	0	0	0.011669	1	7265	7265		114.19	78.059	1	9333400			19082	520	13728	13832	18691	18691					-0.0296182105587377
GVYDGREHTV	10	Unmodified	_GVYDGREHTV_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;chrX:151919037-151923453|150|252.27|0.24|10.04|+|ENST00000431971|MAGEA4,MAGEA4;chrX:151914958-151923453|148|308.46|0.33|9.87|+|ENST00000441865|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-SECPEP	A375_MHC_IP_R2	2	378.5841064453125	3	378.184238	1131.53089	-0.18219	-6.8902E-05	-0.076301	-2.8856E-05	-0.25849	-9.7757E-05	378.1842207313958	19.963	1.2671	20.574	20.197	21.464	0.61029					93	24	6	0	0	0	0.33054	1	6101	6101		40.725	8.6874	1	168940000			19083	520	13728	13832	18692	18692					-0.0296182105587377
GVYDGREHTV	10	Unmodified	_GVYDGREHTV_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;chrX:151919037-151923453|150|252.27|0.24|10.04|+|ENST00000431971|MAGEA4,MAGEA4;chrX:151914958-151923453|148|308.46|0.33|9.87|+|ENST00000441865|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-SECPEP	A375_MHC_IP_R2	2	378.584228515625	3	378.184238	1131.53089	-0.21471	-8.1199E-05	0.051915	1.9633E-05	-0.16279	-6.1566E-05	378.1842354565127	22.815	1.1732	23.445	22.806	23.979	0.63014					42	22	4	0	0	0	0.47386	1	7240	7240		40.725	21.099	1	37936000			19084	520	13728	13832	18693	18693					-0.0296182105587377
GVYDKTSRYW	10	Unmodified	_GVYDKTSRYW_					0	0	0		ENSG00000125124|ENST00000245157|BBS2;ENST00000561951.5_1_16:56535647-56545169:-|nuORF;ENST00000565781.5_1_16:56536573-56553907:-|nuORF;ENST00000569342.5_1_16:56536573-56553774:-|nuORF	ENSG00000125124|ENST00000245157|BBS2	ENSG00000125124|ENST00000245157|BBS2	MULTI-SECPEP	A375_MHC_IP_R2	2	426.17474365234375	3	425.543655	1273.60914	0.048011	2.0431E-05	0.047862	2.0368E-05	0.095873	4.0798E-05	425.54366986615736	43.927	0.25265	44.696	44.53	44.782	0.7691					8	4	3	0	0	0	0.94216	1	16325	16325		4.1166	2.3744	1	1168600			19085	3942	13729	13833	18694	18694					-0.016723884706152603
GVYGDVHRV	9	Unmodified	_GVYGDVHRV_					0	0	0		nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3	nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000119314|O95758-7|PTBP3	MULTI-MSMS	A375_MHC_IP_R1	1	501.6615905761719	2	501.261791	1000.50903	-0.44444	-0.00022278	0.0963	4.8272E-05	-0.34814	-0.00017451	501.26183646017114	24.723	0.40499	24.723	24.597	25.002	0					9	7	2	0	0	0	0.012843	1	7112	7112		92.653	52.696	1	9620300			19086	3580	13730	13834	18695	18695					0.008794189862442181
GVYGDVQRV	9	Unmodified	_GVYGDVQRV_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1;ENSG00000117569|ENST00000674951|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	497.1614685058594	2	496.761623	991.508694	-0.38884	-0.00019316	0.17894	8.8891E-05	-0.2099	-0.00010427	496.7615766006303	36.143	1.0693	36.143	35.625	36.695	0					53	20	5	0	0	0	0.0085579	1	12038	12038		137.42	85.155	1	72488000			19087	998;3493	13731	13835	18696	18696					0.012599992663922421
GVYGDVQRV	9	Unmodified	_GVYGDVQRV_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1;ENSG00000117569|ENST00000674951|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	A375_MHC_IP_R2	2	497.1614685058594	2	496.761623	991.508694	-0.71951	-0.00035742	0.1318	6.5471E-05	-0.58771	-0.00029195	496.76163048329965	35.39	1.0619	36.154	35.525	36.587	0.76338					50	20	4	0	0	0	0.0014143	1	12811	12811		149.91	88.556	1	95701000			19088	998;3493	13731	13835	18697	18697					0.012599992663922421
GVYLVFDA	8	Unmodified	_GVYLVFDA_					0	0	0			REV__ENST00000482837.1_1_3:197707238-197707376:+|nuORF	REV__ENST00000482837.1_1_3:197707238-197707376:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	441.58245849609375	2	442.231636	882.448719	-0.040125	-1.7745E-05	0.0052464	2.3201E-06	-0.034879	-1.5424E-05	442.2314307790751	46.187	0.25364	46.187	45.992	46.245	0					7	4	2	0	0	0	0.96296	1	16135	16135		5.7604	0	1	668580	+		19089	21905	13732	13836	18698	18698					0.0027930860313745143
GVYSELHSV	9	Unmodified	_GVYSELHSV_					0	0	0		ENST00000551359.5_1_12:56713025-56726878:-|nuORF;ENSG00000135473|ENST00000440411|PAN2;nc|ENSG00000135473|Q504Q3-3|PAN2;nc|ENSG00000135473|Q504Q3|PAN2;PAN2|p.M58I|1|0.36|ENSG00000135473|chr12:56332921-56332921|C/T|missense_variant;ENST00000549964.1_1_12:56726569-56726878:-|nuORF;ENST00000547994.5_1_12:56718022-56726878:-|nuORF	ENST00000551359.5_1_12:56713025-56726878:-|nuORF	ENST00000551359.5_1_12:56713025-56726878:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	496.1480712890625	2	495.748182	989.481811	-0.29175	-0.00014463	0.081956	4.0629E-05	-0.20979	-0.000104	495.74822058214176	47.286	0.3574	48.048	47.867	48.225	0.76128					9	6	2	0	0	0	0.16229	1	17758	17758		25.399	11.493	1	2280000			19090	4689	13733	13837	18699	18699					-0.013351093448022766
GVYTAIAVQEI	11	Unmodified	_GVYTAIAVQEI_					0	0	0		ENST00000560064.1_1_15:77328060-77329514:+|nuORF;ENST00000559785.5_1_15:77324735-77329514:+|nuORF;nc|ENSG00000140368|O43586-2|PSTPIP1;ENSG00000140368|ENST00000558012|PSTPIP1	ENST00000560064.1_1_15:77328060-77329514:+|nuORF	ENST00000560064.1_1_15:77328060-77329514:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	387.9681701660156	3	388.548406	1162.62339	0.046357	1.8012E-05	0.93352	0.00036272	0.97987	0.00038073	388.88301039311136	39.999	0.56025	39.999	39.744	40.304	0					22	10	3	0	0	0	0.98524	1	13790	13790		8.7518	2.1283	1	2667200			19091	5146	13734	13838	18700	18700					0.04858263957657982
GWDCSVLA	8	Unmodified	_GWDCSVLA_					0	0	0		ENST00000501122.2_1_11:65194606-65194840:+|nuORF	ENST00000501122.2_1_11:65194606-65194840:+|nuORF	ENST00000501122.2_1_11:65194606-65194840:+|nuORF	MSMS	A375_MHC_IP_R2	2	425.58929443359375	2	425.691821	849.369089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.58	1	141.62	141.12	142.12	0.04216								0	0	0	0.16876	1	55370	55370		2.5775	0	1				19092	12782	13735	13839	18701	18701					-0.06162081342495185
GWEWRRKRWRL	11	Unmodified	_GWEWRRKRWRL_					0	0	0			REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF	REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF	MSMS	A375_MHC_IP_R1	1	543.6661987304688	3	543.639287	1627.89603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.267	1	66.267	65.767	66.767	0								0	0	0	0.16336	1	23992	23992		1.2148	0.80657	1		+		19093	24934	13736	13840	18702	18702					0.10719930262052912
GWGSGLQLA	9	Unmodified	_GWGSGLQLA_					0	0	0		ENST00000334166.8_1_2:150187138-150305584:+|nuORF	ENST00000334166.8_1_2:150187138-150305584:+|nuORF	ENST00000334166.8_1_2:150187138-150305584:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	444.26513671875	2	444.732335	887.450116	-0.3072	-0.00013662	0.06217	2.7649E-05	-0.24503	-0.00010897	444.73241333054057	42.792	0.45587	43.564	43.268	43.724	0.7724					10	8	2	0	0	0	0.74412	1	15948	15948		14.838	0.93222	1	826480			19094	10791	13737	13841	18703	18703					0.0018894269189786428
GWGVVILG	8	Unmodified	_GWGVVILG_					0	0	0		ENST00000590602.5_1_17:76108271-76108565:-|nuORF	ENST00000590602.5_1_17:76108271-76108565:-|nuORF	ENST00000590602.5_1_17:76108271-76108565:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	401.1370849609375	2	400.736889	799.459225	-0.030434	-1.2196E-05	0.64045	0.00025665	0.61002	0.00024446	400.7370383966452	92.66	0.71227	92.66	92.413	93.125	0					34	13	4	0	0	0	0.77839	1	34014	34014		0.79363	0	1	13190000			19095	13787	13738	13842	18704	18704					0.051473360482418684
GWKKQYVVV	9	Unmodified	_GWKKQYVVV_					0	0	0		ENSG00000067900|ENST00000399799|ROCK1	ENSG00000067900|ENST00000399799|ROCK1	ENSG00000067900|ENST00000399799|ROCK1	MULTI-SECPEP	A375_MHC_IP_R1	1	369.9501647949219	3	369.550082	1105.62842	0.59744	0.00022078	1.2625	0.00046656	1.86	0.00068735	369.55056741558707	45.409	0.50383	45.409	45.183	45.687	0					17	9	2	0	0	0	0.76187	1	15897	15897		4.5289	3.9657	1	4179200			19096	1447	13739	13843	18705	18705					0.07982612610953765
GWLIDEQKI	9	Unmodified	_GWLIDEQKI_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	A375_MHC_IP_R1	1	550.745361328125	2	551.300581	1100.58661	-0.42697	-0.00023539	-1.2704	-0.0007004	-1.6974	-0.00093579	551.3001315946967	62.476	0.46137	62.476	62.351	62.813	0					19	8	3	0	0	0	0.74875	1	22649	22649		10.824	10.824	1	1808200	+		19097	22689	13740	13844	18706	18706					0.04034012131751297
GWLSKLLL	8	Unmodified	_GWLSKLLL_					0	0	0			REV__ENST00000445193.7_2_3:58303863-58303956:+|nuORF	REV__ENST00000445193.7_2_3:58303863-58303956:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	465.69500732421875	2	465.294571	928.574589	-0.13828	-6.4339E-05	-0.35857	-0.00016684	-0.49684	-0.00023118	465.2943680704635	118.21	0.45665	118.21	117.92	118.37	0					13	8	2	0	0	0	0.28202	1	43480	43480		60.39	6.814	1	12466000	+		19098	24839	13741	13845	18707	18707					0.1074444017924634
GWLSKLLL	8	Unmodified	_GWLSKLLL_					0	0	0			REV__ENST00000445193.7_2_3:58303863-58303956:+|nuORF	REV__ENST00000445193.7_2_3:58303863-58303956:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	465.6949768066406	2	465.294571	928.574589	-0.50455	-0.00023476	0.70507	0.00032806	0.20052	9.33E-05	465.2948828801441	117.15	0.55921	117.81	117.43	117.99	0.65962					22	10	3	0	0	0	0.16366	1	44284	44284		81.864	11	1	12917000	+		19099	24839	13741	13845	18708	18708					0.1074444017924634
GWLSKLLL	8	Unmodified	_GWLSKLLL_					0	0	0			REV__ENST00000445193.7_2_3:58303863-58303956:+|nuORF	REV__ENST00000445193.7_2_3:58303863-58303956:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	465.294571	928.574589	-0.13828	-6.4339E-05	-0.35857	-0.00016684	-0.49684	-0.00023118	465.2943680704635	118.21	0.45665	118.21	117.92	118.37	0	0	0	NaN	60.39	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12466000	+		19100	24839	13741	13845							0.1074444017924634
GWPCCCHG	8	Unmodified	_GWPCCCHG_					0	0	0			REV__ENST00000572681.6_2_19:42791821-42793046:+|nuORF	REV__ENST00000572681.6_2_19:42791821-42793046:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	863.1798706054688	1	862.279311	861.272034	-1.1088	-0.00095609	0.40261	0.00034716	-0.70619	-0.00060893	862.2796987128102	52.711	0.50603	53.462	53.233	53.739	0.75105					15	9	2	0	0	0	0.77861	1	19852	19852		0	0	1	5105000	+		19101	26287	13742	13846	18709	18709					-0.164150900948016
GWPCCCHG	8	Unmodified	_GWPCCCHG_					0	0	0			REV__ENST00000572681.6_2_19:42791821-42793046:+|nuORF	REV__ENST00000572681.6_2_19:42791821-42793046:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	862.279311	861.272034	-0.38181	-0.00032922	0.02047	1.7651E-05	-0.36134	-0.00031157	862.2793627086058	53.315	0.40601	53.315	53.099	53.505	0	-0.073444	-8.3655E-05	NaN	0	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2623600	+		19102	26287	13742	13846							-0.164150900948016
GWPCCCHG	8	Unmodified	_GWPCCCHG_					0	0	0			REV__ENST00000572681.6_2_19:42791821-42793046:+|nuORF	REV__ENST00000572681.6_2_19:42791821-42793046:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	862.279311	861.272034	-1.1088	-0.00095609	0.40261	0.00034716	-0.70619	-0.00060893	862.2796987128102	52.711	0.50603	53.462	53.233	53.739	0.75105	0.073444	0.00024586	NaN	0	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5105000	+		19103	26287	13742	13846							-0.164150900948016
GWRLGACTSL	10	Unmodified	_GWRLGACTSL_					0	0	0			REV__ENST00000559180.1_1_10:135086915-135090354:-|nuORF	REV__ENST00000559180.1_1_10:135086915-135090354:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	532.6702880859375	2	532.271301	1062.52805	-0.42068	-0.00022391	-0.051054	-2.7174E-05	-0.47173	-0.00025109	532.2714238931607	47.809	0.80864	47.809	47.517	48.325	0					26	15	2	0	0	0	0.42123	1	16853	16853		45.7	15.063	1	2659000	+		19104	26151	13743	13847	18710	18710					-0.0007136771434943512
GWRLGACTSL	10	Unmodified	_GWRLGACTSL_					0	0	0			REV__ENST00000559180.1_1_10:135086915-135090354:-|nuORF	REV__ENST00000559180.1_1_10:135086915-135090354:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	532.6702880859375	2	532.271301	1062.52805	-0.50447	-0.00026852	-0.28525	-0.00015183	-0.78972	-0.00042035	532.7725788226359	47.159	0.9173	47.92	47.563	48.48	0.76127					27	17	2	0	0	0	0.56504	1	17650	17650		27.629	0	1	3856900	+		19105	26151	13743	13847	18711	18711					-0.0007136771434943512
GWRLGACTSL	10	Unmodified	_GWRLGACTSL_					0	0	0			REV__ENST00000559180.1_1_10:135086915-135090354:-|nuORF	REV__ENST00000559180.1_1_10:135086915-135090354:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	532.271301	1062.52805	-0.42068	-0.00022391	-0.051054	-2.7174E-05	-0.47173	-0.00025109	532.2714238931607	47.809	0.80864	47.809	47.517	48.325	0	-0.055619	0.00017278	NaN	45.7	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2659000	+		19106	26151	13743	13847							-0.0007136771434943512
GWSLDKHHI	9	Unmodified	_GWSLDKHHI_					0	0	0		nc|ENSG00000145934|Q9NT68-2|TENM2;ENSG00000145934|ENST00000518659|TENM2	nc|ENSG00000145934|Q9NT68-2|TENM2	nc|ENSG00000145934|Q9NT68-2|TENM2	MULTI-MSMS	A375_MHC_IP_R1	1	547.2114868164062	2	546.78289	1091.55123	-0.024191	-1.3227E-05	-1.75	-0.0009569	-1.7742	-0.00097012	546.7824736830053	49.169	0.50684	49.169	48.983	49.49	0					33	9	6	0	0	0	0.44024	1	17496	17496		22.736	0.98964	1	13123000			19107	5593	13744	13848	18712	18712					0.009113943946204017
GWTGSTGAEL	10	Unmodified	_GWTGSTGAEL_					0	0	0			REV__ENSG00000182179|ENST00000333486|UBA7	REV__ENSG00000182179|ENST00000333486|UBA7	MULTI-MSMS	A375_MHC_IP_R1	1	490.1294860839844	2	489.729989	977.445425	-0.61933	-0.0003033	-0.081734	-4.0028E-05	-0.70106	-0.00034333	489.7299061358339	26.268	0.55827	26.268	26.118	26.677	0					22	10	3	0	0	0	0.33603	1	7822	7822		37.974	3.8716	1	9052400	+		19108	21676	13745	13849	18713	18713					-0.04419986241521201
GWTLRAVHDT	10	Unmodified	_GWTLRAVHDT_					0	0	0			REV__nc|ENSG00000135336|Q9UBD5-2|ORC3	REV__nc|ENSG00000135336|Q9UBD5-2|ORC3	MULTI-SECPEP	A375_MHC_IP_R1	1	385.5958251953125	3	385.868362	1154.58326	0.1464	5.6493E-05	-1.2703	-0.00049017	-1.1239	-0.00043367	385.86777613279406	28.839	0.45481	28.839	28.643	29.098	0					18	8	3	0	0	0	0.94363	1	8999	8999		5.4027	4.5383	1	2301200	+		19109	18844	13746	13850	18714	18714					0.01214762077756859
GWTLRAVHDT	10	Unmodified	_GWTLRAVHDT_					0	0	0			REV__nc|ENSG00000135336|Q9UBD5-2|ORC3	REV__nc|ENSG00000135336|Q9UBD5-2|ORC3	MULTI-MATCH	A375_MHC_IP_R2	2		3	385.868362	1154.58326	-0.38184	-0.00014734	-1.1594	-0.00044736	-1.5412	-0.0005947	385.8677591868578	28.168	0.40509	28.847	28.655	29.06	0.67857	0.0037889	7.8772E-05	NaN	5.4027	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3181700	+		19110	18844	13746	13850							0.01214762077756859
GWTVLSRVE	9	Unmodified	_GWTVLSRVE_					0	0	0			REV__nc|ENSG00000152778|Q13325-2|IFIT5	REV__nc|ENSG00000152778|Q13325-2|IFIT5	MULTI-MSMS	A375_MHC_IP_R1	1	523.6741333007812	2	523.785099	1045.55564	-0.30494	-0.00015973	0.080227	4.2022E-05	-0.22472	-0.0001177	523.784768977066	106.52	0.46028	106.52	106.32	106.78	0					15	8	3	0	0	0	0.2002	1	39116	39116		37.974	0	1	1175600	+		19111	19816	13747	13851	18715	18715					0.03468858817518594
GWTVLSRVE	9	Unmodified	_GWTVLSRVE_					0	0	0			REV__nc|ENSG00000152778|Q13325-2|IFIT5	REV__nc|ENSG00000152778|Q13325-2|IFIT5	MULTI-SECPEP	A375_MHC_IP_R1	1	524.1845703125	2	523.785099	1045.55564	-0.30494	-0.00015973	0.080227	4.2022E-05	-0.22472	-0.0001177	523.784768977066	106.52	0.46028	106.52	106.32	106.78	0					15	8	3	0	0	0	0.71341	1	39144	39144		13.042	0	1	1175600	+		19112	19816	13747	13851	18716	18716					0.03468858817518594
GWVYTFLPFT	10	Unmodified	_GWVYTFLPFT_					0	0	0			REV__ENST00000551041.6_1_12:112844433-112844658:-|nuORF	REV__ENST00000551041.6_1_12:112844433-112844658:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	411.2778625488281	3	410.877975	1229.6121	-0.072854	-2.9934E-05	-0.30797	-0.00012654	-0.38083	-0.00015647	410.8778562550403	66.734	0.81262	67.47	67.189	68.001	0.73631					24	15	2	0	0	0	0.91556	1	25288	25288		8.9762	0.53194	1	5007800	+		19113	26041	13748	13852	18717	18717					0.006474866541566371
GYAAEFSPYL	10	Unmodified	_GYAAEFSPYL_					0	0	0		nc|ENSG00000112357|O00628-2|PEX7;ENSG00000112357|ENST00000318471|PEX7	nc|ENSG00000112357|O00628-2|PEX7	nc|ENSG00000112357|O00628-2|PEX7	MULTI-MSMS	A375_MHC_IP_R2	2	559.1258544921875	2	559.263665	1116.51278	-1.1832	-0.00066172	-3.7931	-0.0021213	-4.9763	-0.0027831	559.2611635101784	52.733	0.60888	53.484	53.233	53.842	0.75105					16	11	2	0	0	0	0.65248	1	19994	19994		16.942	0	1	1499000			19114	3080	13749	13853	18718	18718					-0.040819560305635605
GYADTLKGY	9	Unmodified	_GYADTLKGY_					0	0	0			REV__SYNJ2|p.I123Tfs*20|1|0.13|ENSG00000078269|chr6:158028909-158028909|T/-|frameshift_variant	REV__SYNJ2|p.I123Tfs*20|1|0.13|ENSG00000078269|chr6:158028909-158028909|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	494.642333984375	2	494.242732	986.470912	-0.358	-0.00017694	0.073305	3.6231E-05	-0.2847	-0.00014071	494.2427722907277	50.279	2.2917	50.279	49.793	52.085	0					114	44	5	0	0	0	0.018481	3	17716	17716;17800;17949		85.357	12.389	1	335520000	+		19115	16709	13750	13854	18719;18720;18721	18719					-0.02286511719103146
GYADTLKGY	9	Unmodified	_GYADTLKGY_					0	0	0			REV__SYNJ2|p.I123Tfs*20|1|0.13|ENSG00000078269|chr6:158028909-158028909|T/-|frameshift_variant	REV__SYNJ2|p.I123Tfs*20|1|0.13|ENSG00000078269|chr6:158028909-158028909|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	494.642333984375	2	494.242732	986.470912	-0.77601	-0.00038354	0.20765	0.00010263	-0.56835	-0.0002809	494.2428344345332	49.514	2.0772	50.271	49.792	51.869	0.75737					113	40	5	0	0	0	0.018481	2	18512	18512;18824		85.357	21.396	1	426560000	+		19116	16709	13750	13854	18722;18723	18722					-0.02286511719103146
GYALDYNEY	9	Unmodified	_GYALDYNEY_					0	0	0		ENSG00000165704|ENST00000298556|HPRT1;ENSG00000099256|ENST00000320152|PRTFDC1	ENSG00000165704|ENST00000298556|HPRT1	ENSG00000165704|ENST00000298556|HPRT1	MULTI-SECPEP	A375_MHC_IP_R1	1	554.6356201171875	2	554.235104	1106.45566	-0.56845	-0.00031506	-0.17191	-9.5277E-05	-0.74036	-0.00041033	554.2355799480342	77.534	1.0164	77.534	76.878	77.895	0					25	19	3	0	0	0	0.67483	1	28190	28190		14.838	0	1	2318300			19117	6983	13751	13855	18724	18724					-0.09331423306957731
GYDGQPYTI	9	Unmodified	_GYDGQPYTI_					0	0	0		tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1	tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1	tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1	MSMS	A375_MHC_IP_R2	2	507.1396484375	2	507.232364	1012.45018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.603	1	59.352	58.852	59.852	0.74894								0	0	0	0.15486	1	22171	22171		13.508	0	1				19118	29762	13752	13856	18725	18725					-0.05555102098765019
GYDPVLRYQW	10	Unmodified	_GYDPVLRYQW_					0	0	0			REV__ENST00000508639.5_3_5:138463506-138469058:-|nuORF	REV__ENST00000508639.5_3_5:138463506-138469058:-|nuORF	MSMS	A375_MHC_IP_R2	2	432.6593017578125	3	432.8839	1295.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.587	1	78.33	77.83	78.83	0.74293								0	0	0	0.15435	1	29462	29462		3.5871	2.2574	1		+		19119	25583	13753	13857	18726	18726					-0.006117980909493781
GYDTFTHSI	9	Unmodified	_GYDTFTHSI_					0	0	0			REV__ENSG00000116661|ENST00000354287|FBXO2	REV__ENSG00000116661|ENST00000354287|FBXO2	MULTI-SECPEP	A375_MHC_IP_R2	2	521.1373291015625	2	520.737814	1039.46108	-0.52437	-0.00027306	-0.89977	-0.00046854	-1.4241	-0.00074161	520.7374229025303	90.548	0.81226	91.282	90.904	91.717	0.73451					46	15	4	0	0	0	0.76187	1	34422	34422		3.9444	3.9444	1	6336100	+		19120	17961	13754	13858	18727	18727					-0.057076997244848826
GYDYQSFYY	9	Unmodified	_GYDYQSFYY_					0	0	0			REV__SEC16A|p.S1261F|1|0.2|ENSG00000148396|chr9:136468435-136468435|G/A|missense_variant	REV__SEC16A|p.S1261F|1|0.2|ENSG00000148396|chr9:136468435-136468435|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	603.2264404296875	2	603.242929	1204.47131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.82	1	101.58	101.08	102.08	0.76278								0	0	0	0.15486	1	38221	38221		5.2307	0.47466	1		+		19121	27932	13755	13859	18728	18728					-0.12275136789889984
GYEGADCREI	10	Unmodified	_GYEGADCREI_					0	0	0		ENSG00000106302|ENST00000223026|HYAL4	ENSG00000106302|ENST00000223026|HYAL4	ENSG00000106302|ENST00000223026|HYAL4	MULTI-MSMS	A375_MHC_IP_R1	1	1112.5430908203125	1	1112.4677	1111.46042	0.28259	0.00031437	-0.96444	-0.0010729	-0.68185	-0.00075854	1112.4672700422382	109.69	0.91917	109.69	109.12	110.04	0					44	17	3	0	0	0	0.70925	1	40349	40349		8.1555	0.24537	1	7754000			19122	2682	13756	13860	18729	18729					-0.09084862435838659
GYEPPVQESV	10	Unmodified	_GYEPPVQESV_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-SECPEP	A375_MHC_IP_R1	1	553.1640625	2	552.764029	1103.5135	-0.49334	-0.0002727	-0.032724	-1.8089E-05	-0.52607	-0.00029079	552.7638505958362	57.086	0.61129	57.086	56.804	57.415	0					34	11	4	0	0	0	0.36543	1	20431	20431		49.527	36.996	1	14338000			19123	5559	13757	13861	18730	18730					-0.03411161381518468
GYEPPVQESV	10	Unmodified	_GYEPPVQESV_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	A375_MHC_IP_R2	2	553.664794921875	2	552.764029	1103.5135	-1.1348	-0.00062729	0.409	0.00022608	-0.72582	-0.0004012	552.7640950348537	56.476	0.66381	57.226	56.898	57.561	0.75014					35	12	4	0	0	0	0.15934	1	21318	21318		53.404	32.95	1	14089000			19124	5559	13757	13861	18731	18731					-0.03411161381518468
GYETLFVTVW	10	Unmodified	_GYETLFVTVW_					0	0	0			REV__ENST00000503270.2_3_4:125384624-125384930:-|nuORF	REV__ENST00000503270.2_3_4:125384624-125384930:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	406.2754821777344	3	405.541252	1213.60193	-0.65363	-0.00026507	3.3741	0.0013684	2.7205	0.0011033	405.8763001851249	26.774	0.40248	26.774	26.575	26.978	0					18	7	3	0	0	0	0.92957	1	8079	8079		1.5923	0	1	3398100	+		19125	25514	13758	13862	18732	18732					0.003668789289349661
GYETLHEQY	9	Unmodified	_GYETLHEQY_					0	0	0			REV__ENSG00000277161|ENST00000614443|PIGW	REV__ENSG00000277161|ENST00000614443|PIGW	MULTI-MSMS	A375_MHC_IP_R1	1	570.6538696289062	2	570.253828	1138.4931	-0.079314	-4.5229E-05	-0.093432	-5.328E-05	-0.17275	-9.8509E-05	570.2537725791144	70.063	1.8844	70.063	69.326	71.211	0					76	36	3	0	0	0	0.4867	2	25370	25244;25370		20.454	2.104	1	2935500	+		19126	22970	13759	13863	18733;18734	18734					-0.07060332041328365
GYFDVTTEV	9	Unmodified	_GYFDVTTEV_					0	0	0			REV__ENSG00000178919|ENST00000375123|FOXE1	REV__ENSG00000178919|ENST00000375123|FOXE1	MSMS	A375_MHC_IP_R2	2	515.6859130859375	2	515.740022	1029.46549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.59	1	54.341	53.841	54.841	0.75105								0	0	0	0.15486	1	20227	20227		13.508	0	1		+		19127	21525	13760	13864	18735	18735					-0.048062353015666304
GYFEFFED	8	Unmodified	_GYFEFFED_					0	0	0		tr|U7SGR2|U7SGR2_FUSNUXaa-ProaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02289PE=3SV=1	tr|U7SGR2|U7SGR2_FUSNUXaa-ProaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02289PE=3SV=1	tr|U7SGR2|U7SGR2_FUSNUXaa-ProaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02289PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	352.21221923828125	3	351.811519	1052.41273	-0.12791	-4.5E-05	1.2716	0.00044737	1.1437	0.00040237	351.8123425249158	90.581	0.55904	91.315	91.007	91.566	0.7345					20	10	3	0	0	0	0.972	1	34467	34467		0.45834	0.18932	1	1560800			19128	29413	13761	13865	18736	18736					-0.11138193364377003
GYFFQKRR	8	Unmodified	_GYFFQKRR_					0	0	0		ENST00000535163.1_1_12:32030484-32030598:-|nuORF	ENST00000535163.1_1_12:32030484-32030598:-|nuORF	ENST00000535163.1_1_12:32030484-32030598:-|nuORF	MSMS	A375_MHC_IP_R1	1	367.75732421875	3	367.869926	1100.58795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.156	1	18.156	17.656	18.656	0								0	0	0	0.16876	1	4313	4313		0.45834	0.18932	1				19129	13223	13762	13866	18737	18737					0.041676910111846155
GYFVDATTI	9	Unmodified	_GYFVDATTI_					0	0	0		ENST00000496911.1_1_2:74733844-74734286:-|nuORF;ENST00000480844.2_1_2:74732736-74734502:-|nuORF;ENST00000475863.5_1_2:74732272-74734286:-|nuORF;ENSG00000115289|ENST00000233630|PCGF1	ENST00000496911.1_1_2:74733844-74734286:-|nuORF	ENST00000496911.1_1_2:74733844-74734286:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	986.8841552734375	1	986.482939	985.475663	0.11605	0.00011448	-0.20298	-0.00020024	-0.086936	-8.5761E-05	986.4827702656045	98.856	0.40495	99.616	99.403	99.808	0.75977					12	7	2	0	0	0	0.0093345	1	37532	37532		104.8	62.705	1	2381800			19130	3296	13763	13867	18738	18738					-0.017656275763442864
GYFVDATTI	9	Unmodified	_GYFVDATTI_					0	0	0		ENST00000496911.1_1_2:74733844-74734286:-|nuORF;ENST00000480844.2_1_2:74732736-74734502:-|nuORF;ENST00000475863.5_1_2:74732272-74734286:-|nuORF;ENSG00000115289|ENST00000233630|PCGF1	ENST00000496911.1_1_2:74733844-74734286:-|nuORF	ENST00000496911.1_1_2:74733844-74734286:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	986.482939	985.475663	0.17007	0.00016777	0.29657	0.00029256	0.46664	0.00046033	986.4828387323759	99.648	0.40324	99.648	99.371	99.774	0	0.016235	0.00019326	NaN	104.8	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2669800			19131	3296	13763	13867							-0.017656275763442864
GYGERHSLY	9	Unmodified	_GYGERHSLY_					0	0	0			REV__nc|ENSG00000144504|Q9P2S6-4|ANKMY1	REV__nc|ENSG00000144504|Q9P2S6-4|ANKMY1	MULTI-MSMS	A375_MHC_IP_R1	1	541.6600341796875	2	541.256705	1080.49886	-0.22899	-0.00012394	1.784	0.00096561	1.555	0.00084167	541.2577425631156	48.727	1.3657	48.727	47.718	49.084	0					44	26	2	0	0	0	0.58047	1	17294	17294		15.847	4.2069	1	1911500	+		19132	19428	13764	13868	18739	18739					-0.03817188739003541
GYGGDDCA	8	Unmodified	_GYGGDDCA_					0	0	0		ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	MULTI-MSMS	A375_MHC_IP_R2	2	758.6214599609375	1	757.245745	756.238469	-1.1557	-0.00087515	-0.87362	-0.00066154	-2.0293	-0.0015367	757.2463839898535	6.0467	0.36452	6.4618	6.3288	6.6933	0.4151					88	47	2	0	0	0	0.77861	1	1993	1993		0	0	1	379980			19133	4954	13765	13869	18740	18740					-0.14940097061366941
GYGGDDCA	8	Unmodified	_GYGGDDCA_					0	0	0		ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	MULTI-SECPEP	A375_MHC_IP_R2	2	756.6480712890625	1	757.245745	756.238469	-1.1557	-0.00087512	-0.81408	-0.00061646	-1.9697	-0.0014916	757.2466006667337	16.363	0.23716	16.951	16.807	17.044	0.58774					55	35	2	0	0	0	0.972	1	4834	4834		0	0	1	244230			19134	4954	13765	13869	18741	18741					-0.14940097061366941
GYGNGNGS	8	Unmodified	_GYGNGNGS_					0	0	0			REV__ENSG00000138829|ENST00000262464|FBN2	REV__ENSG00000138829|ENST00000262464|FBN2	MULTI-SECPEP	A375_MHC_IP_R2	2	725.5640869140625	1	725.284908	724.277631	-0.59909	-0.00043451	-0.82691	-0.00059974	-1.426	-0.0010343	725.2844053856741	144.43	0.24327	144.45	144.37	144.61	0.024414					6	5	2	0	0	0	0.972	1	56436	56436		0.79363	0	1	381120	+		19135	19127	13766	13870	18742	18742					-0.09553628715468676
GYGPGAAY	8	Unmodified	_GYGPGAAY_					0	0	0			REV__ENSG00000145012|ENST00000617246|LPP	REV__ENSG00000145012|ENST00000617246|LPP	MULTI-MSMS	A375_MHC_IP_R1	1	755.7359008789062	1	755.335881	754.328604	-0.60314	-0.00045557	0.28212	0.0002131	-0.32102	-0.00024248	755.3360918365374	40.113	0.5099	40.113	39.845	40.355	0					17	9	2	0	0	0	0.67385	1	13771	13771		41.817	30.703	1	3253300	+		19136	19456	13767	13871	18743	18743					-0.05838679670625879
GYGPGAAY	8	Unmodified	_GYGPGAAY_					0	0	0			REV__ENSG00000145012|ENST00000617246|LPP	REV__ENSG00000145012|ENST00000617246|LPP	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	755.335881	754.328604	-0.60314	-0.00045557	0.28212	0.0002131	-0.32102	-0.00024248	755.3360918365374	40.113	0.5099	40.113	39.845	40.355	0	-0.056919	-3.5065E-05	NaN	41.817	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3253300	+		19137	19456	13767	13871							-0.05838679670625879
GYGPGAAY	8	Unmodified	_GYGPGAAY_					0	0	0			REV__ENSG00000145012|ENST00000617246|LPP	REV__ENSG00000145012|ENST00000617246|LPP	MULTI-MATCH	A375_MHC_IP_R2	2		1	755.335881	754.328604	-0.95611	-0.00072219	0.36586	0.00027635	-0.59025	-0.00044584	755.3361361742892	39.452	0.55904	40.227	39.914	40.473	0.77451	0.056919	2.8186E-05	NaN	41.817	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2859700	+		19138	19456	13767	13871							-0.05838679670625879
GYGRSCLHIR	10	Unmodified	_GYGRSCLHIR_					0	0	0		ZNF577|p.K122R|1|0.11|ENSG00000161551|chr19:51873625-51873625|T/C|missense_variant	ZNF577|p.K122R|1|0.11|ENSG00000161551|chr19:51873625-51873625|T/C|missense_variant	ZNF577|p.K122R|1|0.11|ENSG00000161551|chr19:51873625-51873625|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	580.6665649414062	2	581.300924	1160.5873	-0.58344	-0.00033915	0.079374	4.614E-05	-0.50406	-0.00029301	581.3008557135021	37.764	0.66512	38.538	38.074	38.739	0.77451					30	12	3	0	0	0	0.92514	1	13826	13826		8.1555	0	1	6598500			19139	30230	13768	13872	18744	18744					0.013425282998014154
GYHRPRHYI	9	Unmodified	_GYHRPRHYI_					0	0	0		ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	MULTI-SECPEP	A375_MHC_IP_R2	2	600.2142944335938	2	599.815056	1197.61556	-0.68779	-0.00041254	-0.40818	-0.00024483	-1.096	-0.00065738	599.8148561767616	50.378	0.60855	51.132	50.854	51.462	0.75406					31	11	4	0	0	0	0.75466	1	18909	18909		7.9102	7.9102	1	8312300			19140	8991	13769	13873	18745	18745					0.024655942714161938
GYHVVESNRR	10	Unmodified	_GYHVVESNRR_					0	0	0			REV__ENST00000414893.5_2_1:40506455-40525026:+|nuORF	REV__ENST00000414893.5_2_1:40506455-40525026:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	406.6111145019531	3	406.210899	1215.61087	-0.37124	-0.0001508	0.55343	0.00022481	0.18219	7.4007E-05	406.2111101562357	52.451	0.96754	52.451	51.879	52.847	0					32	18	3	0	0	0	0.70329	1	18626	18626		6.1918	1.1443	1	12800000	+		19141	24511	13770	13874	18746	18746					0.01168665337991115
GYIAKYRLY	9	Unmodified	_GYIAKYRLY_					0	0	0			REV__GCNT3|p.E437K|1|0.33|ENSG00000140297|chr15:59619547-59619547|G/A|missense_variant	REV__GCNT3|p.E437K|1|0.33|ENSG00000140297|chr15:59619547-59619547|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	573.178955078125	2	573.818941	1145.62333	-0.27947	-0.00016036	-2.6497	-0.0015204	-2.9291	-0.0016808	574.3204618667796	58.353	0.20258	58.353	58.228	58.43	0					5	3	2	0	0	0	0.75466	1	20959	20959		4.3292	0	1	740410	+		19142	19200	13771	13875	18747	18747					0.0563430874833557
GYIFARFLV	9	Unmodified	_GYIFARFLV_					0	0	0			REV__ENST00000373115.4_1_10:73769382-73769655:+|nuORF	REV__ENST00000373115.4_1_10:73769382-73769655:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	543.71044921875	2	543.310752	1084.60695	-0.64577	-0.00035085	-0.2353	-0.00012784	-0.88107	-0.00047869	543.310731512338	38.486	0.56331	38.486	38.268	38.832	0					17	10	2	0	0	0	0.52144	1	13101	13101		23.148	6.0355	1	3936500	+		19143	24082	13772	13876	18748	18748					0.06803227582213367
GYIVLGLVAW	10	Unmodified	_GYIVLGLVAW_					0	0	0		nc|ENSG00000137968|Q8NCS7|SLC44A5;nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5	nc|ENSG00000137968|Q8NCS7|SLC44A5	nc|ENSG00000137968|Q8NCS7|SLC44A5	MSMS	A375_MHC_IP_R2	2	545.7161865234375	2	545.81841	1089.62227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131	1	131.22	130.72	131.72	0.2142								0	0	0	0.15508	1	51534	51534		4.3292	0.38484	1				19144	14630	13773	13877	18749	18749					0.08104094379405069
GYKDNVISPLS	11	Unmodified	_GYKDNVISPLS_					0	0	0			REV__ENSG00000080608|ENST00000397885|PUM3	REV__ENSG00000080608|ENST00000397885|PUM3	MULTI-MSMS	A375_MHC_IP_R1	1	398.6211242675781	3	398.211794	1191.61355	-0.35819	-0.00014264	0.78332	0.00031193	0.42513	0.00016929	398.21214255851265	53.07	0.40437	53.07	52.744	53.148	0					10	7	2	0	0	0	0.56199	1	18802	18802		16.275	2.7559	1	698380	+		19145	16753	13774	13878	18750	18750					0.02541075952308347
GYKNRSEEI	9	Unmodified	_GYKNRSEEI_					0	0	0		HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|16|1|sense	HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|16|1|sense	HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|16|1|sense	MULTI-SECPEP	A375_MHC_IP_R1	1	548.1426391601562	2	548.275095	1094.53564	-0.62472	-0.00034252	-0.053549	-2.936E-05	-0.67827	-0.00037188	548.2751280823768	65.051	1.1717	65.051	64.444	65.616	0					38	22	2	0	0	0	0.69507	1	23373	23373		13.906	4.5229	1	1080500			19146	14114	13775	13879	18751	18751					-0.00784936913078127
GYKWFKEL	8	Unmodified	_GYKWFKEL_					0	0	0		nc|ENSG00000197121|Q75T13-2|PGAP1;ENSG00000197121|ENST00000354764|PGAP1	nc|ENSG00000197121|Q75T13-2|PGAP1	nc|ENSG00000197121|Q75T13-2|PGAP1	MSMS	A375_MHC_IP_R2	2	535.6925659179688	2	535.78711	1069.55967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.412	1	36.175	35.675	36.675	0.76338								0	0	0	0.16876	1	12839	12839		7.9102	0	1				19147	9117	13776	13880	18752	18752					0.027669483112276794
GYLGMHFKY	9	Unmodified	_GYLGMHFKY_					0	0	0			REV__ENSG00000164081|ENST00000341333|TEX264	REV__ENSG00000164081|ENST00000341333|TEX264	MULTI-MSMS	A375_MHC_IP_R2	2	558.1839599609375	2	558.27077	1114.52699	-0.80379	-0.00044873	0.75539	0.00042171	-0.0484	-2.702E-05	558.2713713833593	66.816	1.222	67.552	66.882	68.104	0.73631					28	23	2	0	0	0	0.68216	1	25085	25085		8.5933	0	1	3217600	+		19148	20447	13777	13881	18753	18753					-0.025695820832652316
GYLGQVTTI	9	Unmodified	_GYLGQVTTI_					0	0	0		nc|ENSG00000126261|Q9UBT2-2|UBA2;ENSG00000126261|ENST00000246548|UBA2	nc|ENSG00000126261|Q9UBT2-2|UBA2	nc|ENSG00000126261|Q9UBT2-2|UBA2	MULTI-SECPEP	A375_MHC_IP_R2	2	475.6334533691406	2	476.260925	950.507297	-0.39991	-0.00019046	0.065633	3.1258E-05	-0.33427	-0.0001592	476.26091484008117	86.737	1.0181	87.47	87.049	88.067	0.733					43	19	3	0	0	0	0.55359	1	32955	32955		15.847	5.7733	1	5033700			19149	4036	13778	13882	18754	18754					0.030063651776117695
GYLGRHPGSL	10	Unmodified	_GYLGRHPGSL_					0	0	0			REV__ENSG00000068394|ENST00000156109|GPKOW	REV__ENSG00000068394|ENST00000156109|GPKOW	MULTI-SECPEP	A375_MHC_IP_R2	2	353.2573547363281	3	352.857686	1055.55123	-0.27649	-9.7563E-05	0.0017981	6.3447E-07	-0.2747	-9.6928E-05	352.8576767625964	27.815	0.65808	28.493	28.251	28.909	0.67857					18	12	2	0	0	0	0.88918	1	9606	9606		11.518	0.61892	1	2492200	+		19150	16540	13779	13883	18755	18755					0.02567394394600342
GYLLVLHKE	9	Unmodified	_GYLLVLHKE_					0	0	0		ENST00000588073.1_1_17:42231773-42239297:+|nuORF	ENST00000588073.1_1_17:42231773-42239297:+|nuORF	ENST00000588073.1_1_17:42231773-42239297:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	536.711669921875	2	536.313492	1070.61243	-0.61689	-0.00033085	-0.50259	-0.00026955	-1.1195	-0.00060039	536.3129547271399	78.125	1.0183	78.125	77.436	78.454	0					38	19	3	0	0	0	0.41879	1	28426	28426		32.305	3.8186	1	6733700			19151	13756	13780	13884	18756	18756					0.07994906374028687
GYLLVLHKE	9	Unmodified	_GYLLVLHKE_					0	0	0		ENST00000588073.1_1_17:42231773-42239297:+|nuORF	ENST00000588073.1_1_17:42231773-42239297:+|nuORF	ENST00000588073.1_1_17:42231773-42239297:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	536.7135009765625	2	536.313492	1070.61243	-0.66867	-0.00035862	0.2532	0.00013579	-0.41547	-0.00022282	536.313403279293	88.062	0.61153	88.062	87.848	88.46	0					16	11	2	0	0	0	0.41879	1	32384	32384		32.305	6.9062	1	1988300			19152	13756	13780	13884	18757	18757					0.07994906374028687
GYLLVLHKE	9	Unmodified	_GYLLVLHKE_					0	0	0		ENST00000588073.1_1_17:42231773-42239297:+|nuORF	ENST00000588073.1_1_17:42231773-42239297:+|nuORF	ENST00000588073.1_1_17:42231773-42239297:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	536.712158203125	2	536.313492	1070.61243	-0.86983	-0.0004665	-0.30553	-0.00016386	-1.1754	-0.00063036	536.3131030091059	77.14	0.91267	77.883	77.504	78.416	0.74293					42	17	3	0	0	0	0.41879	2	29236	29230;29236		32.305	3.8186	1	7187300			19153	13756	13780	13884	18758;18759	18759					0.07994906374028687
GYLPNKQVL	9	Unmodified	_GYLPNKQVL_					0	0	0		nc|ENSG00000131979|P30793-3|GCH1;nc|ENSG00000131979|P30793-2|GCH1;nc|ENSG00000131979|P30793-4|GCH1;ENSG00000131979|ENST00000491895|GCH1	nc|ENSG00000131979|P30793-3|GCH1	nc|ENSG00000131979|P30793-3|GCH1	MULTI-SECPEP	A375_MHC_IP_R1	1	516.69775390625	2	516.297842	1030.58113	-0.45157	-0.00023314	0.038848	2.0057E-05	-0.41272	-0.00021309	516.2979110179945	54.578	0.45708	54.578	54.314	54.771	0					14	8	2	0	0	0	0.24479	1	19481	19481		42.095	32.021	1	4653600			19154	4363	13781	13885	18760	18760					0.06706333339957382
GYLPNKQVL	9	Unmodified	_GYLPNKQVL_					0	0	0		nc|ENSG00000131979|P30793-3|GCH1;nc|ENSG00000131979|P30793-2|GCH1;nc|ENSG00000131979|P30793-4|GCH1;ENSG00000131979|ENST00000491895|GCH1	nc|ENSG00000131979|P30793-3|GCH1	nc|ENSG00000131979|P30793-3|GCH1	MULTI-SECPEP	A375_MHC_IP_R2	2	516.697021484375	2	516.297842	1030.58113	-1.2244	-0.00063217	0.16496	8.5169E-05	-1.0595	-0.000547	516.2980283130163	53.729	0.4115	54.48	54.249	54.661	0.75105					13	7	2	0	0	0	0.07754	1	20272	20272		74.423	40.32	1	5350000			19155	4363	13781	13885	18761	18761					0.06706333339957382
GYLPPKSLAEA	11	Unmodified	_GYLPPKSLAEA_					0	0	0		ENST00000296161.8_1_3:122292171-122292468:+|nuORF	ENST00000296161.8_1_3:122292171-122292468:+|nuORF	ENST00000296161.8_1_3:122292171-122292468:+|nuORF	MSMS	A375_MHC_IP_R1	1	573.281005859375	2	573.313689	1144.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.135	1	76.135	75.635	76.635	0								0	0	0	0.15837	1	27748	27748		15.248	0.41021	1				19156	10502	13782	13886	18762	18762					0.04630281303229822
GYLQPLVAVQV	11	Unmodified	_GYLQPLVAVQV_					0	0	0		ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	MULTI-SECPEP	A375_MHC_IP_R2	2	594.2450561523438	2	593.845156	1185.67576	-0.52952	-0.00031445	-0.033117	-1.9666E-05	-0.56264	-0.00033412	593.8452167849912	83.419	0.5591	84.159	83.848	84.407	0.73962					16	10	3	0	0	0	0.90584	1	31729	31729		22.736	13.353	1	1453900			19157	1480	13783	13887	18763	18763					0.09034847091265874
GYLQPLVAVQV	11	Unmodified	_GYLQPLVAVQV_					0	0	0		ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	MULTI-MATCH	A375_MHC_IP_R1	1		2	593.845156	1185.67576	-0.54347	-0.00032274	0.40163	0.00023851	-0.14184	-8.4233E-05	593.8453165165337	84.231	0.40218	84.231	83.989	84.391	0	0.036253	0.00017923	NaN	22.736	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1788700			19158	1480	13783	13887							0.09034847091265874
GYLQRQALP	9	Unmodified	_GYLQRQALP_					0	0	0		nc|ENSG00000197177|Q86SQ6-1|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	MULTI-SECPEP	A375_MHC_IP_R1	1	523.6527099609375	2	523.293091	1044.57163	-0.57486	-0.00030082	0.056697	2.9669E-05	-0.51816	-0.00027115	523.2930462175835	89.89	1.3164	89.89	89.375	90.692	0					48	25	3	0	0	0	0.65246	1	33075	33075		21.747	3.6117	1	4815000			19159	14843	13784	13888	18764	18764					0.05112565054423612
GYLSHIKSI	9	Unmodified	_GYLSHIKSI_					0	0	0			REV__ENSG00000119720|ENST00000354366|NRDE2	REV__ENSG00000119720|ENST00000354366|NRDE2	MULTI-MSMS	A375_MHC_IP_R1	1	509.68963623046875	2	509.290017	1016.56548	-0.57883	-0.00029479	-0.46597	-0.00023731	-1.0448	-0.00053211	509.289774915978	68.543	1.165	68.543	67.654	68.819	0					43	22	3	0	0	0	0.27715	2	24812	24812;24817		32.305	6.9062	1	9357600	+		19160	18091	13785	13889	18765;18766	18765					0.05786046822890967
GYLSHIKSI	9	Unmodified	_GYLSHIKSI_					0	0	0			REV__ENSG00000119720|ENST00000354366|NRDE2	REV__ENSG00000119720|ENST00000354366|NRDE2	MULTI-SECPEP	A375_MHC_IP_R1	1	509.68963623046875	2	509.290017	1016.56548	-0.57883	-0.00029479	-0.46597	-0.00023731	-1.0448	-0.00053211	509.289774915978	68.543	1.165	68.543	67.654	68.819	0					43	22	3	0	0	0	0.50702	1	24812	24812		32.305	8.2849	1	9357600	+		19161	18091	13785	13889	18767	18767					0.05786046822890967
GYLSHIKSI	9	Unmodified	_GYLSHIKSI_					0	0	0			REV__ENSG00000119720|ENST00000354366|NRDE2	REV__ENSG00000119720|ENST00000354366|NRDE2	MULTI-SECPEP	A375_MHC_IP_R1	1	509.67315673828125	2	509.290017	1016.56548	-0.60231	-0.00030675	-0.42337	-0.00021562	-1.0257	-0.00052237	509.28982810811175	66.339	0.40533	66.339	66.022	66.428	0					10	7	2	0	0	0	0.53748	1	23996	23996		30.637	8.8899	1	853920	+		19162	18091	13785	13889	18768	18768					0.05786046822890967
GYLSHIKSI	9	Unmodified	_GYLSHIKSI_					0	0	0			REV__ENSG00000119720|ENST00000354366|NRDE2	REV__ENSG00000119720|ENST00000354366|NRDE2	MULTI-MSMS	A375_MHC_IP_R2	2	509.6897277832031	2	509.290017	1016.56548	-0.89607	-0.00045636	0.10002	5.0938E-05	-0.79605	-0.00040542	509.29005286415645	55.865	0.86484	56.615	56.186	57.051	0.75014					55	15	5	0	0	0	0.22528	1	21091	21091		36.127	1.7253	1	42858000	+		19163	18091	13785	13889	18769	18769					0.05786046822890967
GYLSHIKSI	9	Unmodified	_GYLSHIKSI_					0	0	0			REV__ENSG00000119720|ENST00000354366|NRDE2	REV__ENSG00000119720|ENST00000354366|NRDE2	MULTI-SECPEP	A375_MHC_IP_R2	2	508.6812438964844	2	509.290017	1016.56548	-0.74274	-0.00037827	-0.95134	-0.00048451	-1.6941	-0.00086278	509.2896571012121	67.534	1.9355	68.271	66.882	68.817	0.73631					81	33	4	0	0	0	0.4261	1	25558	25558		37.974	13.953	1	11469000	+		19164	18091	13785	13889	18770	18770					0.05786046822890967
GYMRFVFW	8	Unmodified	_GYMRFVFW_					0	0	0			REV__nc|ENSG00000132437|P20711-4|DDC	REV__nc|ENSG00000132437|P20711-4|DDC	MULTI-SECPEP	A375_MHC_IP_R1	1	552.6446533203125	2	553.26803	1104.52151	-0.83653	-0.00046282	-1.4628	-0.00080932	-2.2993	-0.0012721	553.2671672978439	36.541	0.50653	36.541	36.339	36.845	0					12	9	2	0	0	0	0.97144	1	12363	12363		5.2307	0	1	1390000	+		19165	18653	13786	13890	18771	18771					-0.02657260875071188
GYNDVFARY	9	Unmodified	_GYNDVFARY_					0	0	0			REV__ENSG00000186716|ENST00000305877|BCR	REV__ENSG00000186716|ENST00000305877|BCR	MULTI-MSMS	A375_MHC_IP_R1	1	553.2294921875	2	552.759081	1103.50361	-0.54345	-0.0003004	0.23772	0.0001314	-0.30573	-0.00016899	552.7591460422719	54.871	1.1148	54.871	54.113	55.228	0					46	21	4	0	0	0	0.68216	1	19457	19457		8.5933	0	1	18829000	+		19166	21984	13787	13891	18772	18772					-0.04400304596242677
GYNFRFARY	9	Unmodified	_GYNFRFARY_					0	0	0		nc|ENSG00000083454|Q93086-2|P2RX5;nc|ENSG00000083454|Q93086-5|P2RX5;nc|ENSG00000083454|Q93086-1|P2RX5;ENSG00000083454|ENST00000225328|P2RX5;nc|ENSG00000083454|Q93086-4|P2RX5;nc|ENSG00000083454|Q93086|P2RX5	nc|ENSG00000083454|Q93086-2|P2RX5	nc|ENSG00000083454|Q93086-2|P2RX5	MSMS	A375_MHC_IP_R1	1	597.2279052734375	2	597.296165	1192.57778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.935	1	93.935	93.435	94.435	0								0	0	0	0.15486	1	34527	34527		16.942	6.1184	1				19167	1778	13788	13892	18773	18773					-0.010809167140678255
GYNTFDRLI	9	Unmodified	_GYNTFDRLI_					0	0	0			REV__ENST00000589085.5_1_19:5785216-5787684:-|nuORF	REV__ENST00000589085.5_1_19:5785216-5787684:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	549.14892578125	2	549.782556	1097.55056	-0.5984	-0.00032899	0.1702	9.3575E-05	-0.4282	-0.00023541	549.7825560908655	52.312	1.3689	52.312	52.034	53.403	0					38	26	2	0	0	0	0.53748	1	18855	18855		30.637	0	1	2758800	+		19168	19291	13789	13893	18774	18774					0.005685549549070856
GYRKLEVTY	9	Unmodified	_GYRKLEVTY_					0	0	0			REV__nc|ENSG00000144596|Q9C0E4-2|GRIP2;REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	MULTI-SECPEP	A375_MHC_IP_R1	1	564.6296997070312	2	564.806031	1127.59751	-0.35673	-0.00020148	0.046723	2.6389E-05	-0.31	-0.00017509	565.3072936778848	47.462	0.55751	47.462	47.211	47.768	0					24	10	3	0	0	0	0.74651	1	16723	16723		0.52476	0	1	2809600	+		19169	19954;19433	13790	13894	18775	18775					0.038814145060541705
GYRQEREGFLP	11	Unmodified	_GYRQEREGFLP_					0	0	0		ENSG00000017483|ENST00000620913|SLC38A5	ENSG00000017483|ENST00000620913|SLC38A5	ENSG00000017483|ENST00000620913|SLC38A5	MULTI-MSMS	A375_MHC_IP_R1	1	451.1558532714844	3	451.229959	1350.66805	-0.16958	-7.652E-05	-0.46135	-0.00020817	-0.63093	-0.00028469	451.2295228985239	73.825	0.75965	73.825	73.64	74.4	0					19	14	2	0	0	0	0.73557	1	27045	27045		1.4551	0	1	908720			19170	1042	13791	13895	18776	18776					0.006740878237224024
GYRSFVEKL	9	Unmodified	_GYRSFVEKL_					0	0	0			REV__ENSG00000184209|ENST00000526639|SNRNP35	REV__ENSG00000184209|ENST00000526639|SNRNP35	MULTI-MSMS	A375_MHC_IP_R1	1	367.2696228027344	3	366.869591	1097.58694	0.0036124	1.3253E-06	1.4975	0.00054937	1.5011	0.0005507	366.8698634344402	36.542	0.7617	36.542	36.084	36.845	0					29	14	3	0	0	0	0.6324	1	12282	12282		8.9762	4.0792	1	2904500	+		19171	21803	13792	13896	18777	18777					0.042054318516193234
GYSDGDDRL	9	Unmodified	_GYSDGDDRL_					0	0	0			REV__ENST00000509702.5_1_4:23766811-23826805:-|nuORF	REV__ENST00000509702.5_1_4:23766811-23826805:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	499.1551513671875	2	499.214703	996.414853	-0.44265	-0.00022098	-2.423	-0.0012096	-2.8656	-0.0014306	499.21335542514544	90.917	0.45555	91.651	91.362	91.818	0.7345					13	8	2	0	0	0	0.65721	1	34569	34569		10.824	1.4765	1	602520	+		19172	17598	13793	13897	18778	18778					-0.08349764626564138
GYSKVPENY	9	Unmodified	_GYSKVPENY_					0	0	0			REV__nc|ENSG00000196437|Q5MCW4-2|ZNF569	REV__nc|ENSG00000196437|Q5MCW4-2|ZNF569	MULTI-MSMS	A375_MHC_IP_R1	1	529.2129516601562	2	528.753464	1055.49238	-0.35815	-0.00018937	-0.042741	-2.2599E-05	-0.40089	-0.00021197	528.7530666573401	71.541	0.55415	71.541	71.211	71.765	0					20	10	3	0	0	0	0.55818	1	25871	25871		16.942	8.349	1	12594000	+		19173	22199	13794	13898	18779	18779					-0.03315126690381476
GYSNYSIYR	9	Unmodified	_GYSNYSIYR_					0	0	0			REV__ENSG00000138792|ENST00000265162|ENPEP	REV__ENSG00000138792|ENST00000265162|ENPEP	MULTI-MSMS	A375_MHC_IP_R1	1	563.20654296875	2	561.764363	1121.51417	-0.57396	-0.00032243	0.086936	4.8837E-05	-0.48702	-0.00027359	561.764310848306	27.208	0.60617	27.208	26.978	27.584	0					32	11	4	0	0	0	0.46038	1	8171	8171		21.747	9.2151	1	44115000	+		19174	19123	13795	13899	18780	18780					-0.04172321941814516
GYSSQHYGPY	10	Unmodified	_GYSSQHYGPY_					0	0	0			REV__ENSG00000176986|ENST00000345254|SEC24C	REV__ENSG00000176986|ENST00000345254|SEC24C	MULTI-MSMS	A375_MHC_IP_R2	2	579.6720581054688	2	579.74617	1157.47779	-0.4917	-0.00028506	-2.2127	-0.0012828	-2.7044	-0.0015679	580.2467233384853	35.064	0.15102	35.827	35.727	35.878	0.76338					4	2	2	0	0	0	0.7098	1	12699	12699		7.9102	1.7044	1	641020	+		19175	21433	13796	13900	18781	18781					-0.09465198838506694
GYTLAGLDTI	10	Unmodified	_GYTLAGLDTI_					0	0	0		ENSG00000165124|ENST00000374469|SVEP1	ENSG00000165124|ENST00000374469|SVEP1	ENSG00000165124|ENST00000374469|SVEP1	MULTI-SECPEP	A375_MHC_IP_R1	1	512.1580200195312	2	512.27149	1022.52843	-0.22917	-0.0001174	-0.74719	-0.00038276	-0.97636	-0.00050016	512.2713868326092	45.517	0.45354	45.517	45.284	45.738	0					15	8	3	0	0	0	0.61429	1	15974	15974		30.637	0	1	1632500			19176	6918	13797	13901	18782	18782					0.01806330486465413
GYTLAGLDTI	10	Unmodified	_GYTLAGLDTI_					0	0	0		ENSG00000165124|ENST00000374469|SVEP1	ENSG00000165124|ENST00000374469|SVEP1	ENSG00000165124|ENST00000374469|SVEP1	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1574096679688	2	512.27149	1022.52843	-0.87587	-0.00044868	-0.57376	-0.00029392	-1.4496	-0.0007426	512.2712855933905	44.718	0.71238	45.488	45.188	45.901	0.7691					19	13	2	0	0	0	0.48072	1	16695	16695		37.974	10.345	1	1394900			19177	6918	13797	13901	18783	18783					0.01806330486465413
GYTLSDGE	8	Unmodified	_GYTLSDGE_					0	0	0		ENSG00000121904|ENST00000373381|CSMD2;nc|ENSG00000121904|Q7Z408|CSMD2	ENSG00000121904|ENST00000373381|CSMD2	ENSG00000121904|ENST00000373381|CSMD2	MSMS	A375_MHC_IP_R1	1	421.14385986328125	2	421.18234	840.350128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.36	1	103.36	102.86	103.86	0								0	0	0	0.16876	1	37969	37969		2.5775	0	1				19178	3748	13798	13902	18784	18784					-0.0764333943255906
GYTSAYASIF	10	Unmodified	_GYTSAYASIF_					0	0	0			REV__CASR|p.P823S|1|0.38|ENSG00000036828|chr3:122284421-122284421|C/T|missense_variant	REV__CASR|p.P823S|1|0.38|ENSG00000036828|chr3:122284421-122284421|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	540.6535034179688	2	540.25584	1078.49713	-1.283	-0.00069312	-4.1608	-0.0022479	-5.4437	-0.002941	540.7538894521678	53.807	0.66684	54.558	54.249	54.916	0.75105					20	12	2	0	0	0	0.58828	1	20302	20302		21.747	4.8044	1	1592600	+		19179	15582	13799	13903	18785	18785					-0.03898242547643349
GYVDRDIQLL	10	Unmodified	_GYVDRDIQLL_					0	0	0		nc|ENSG00000113303|Q6UX41-7|BTNL8;nc|ENSG00000113303|Q6UX41-6|BTNL8;ENSG00000113303|ENST00000340184|BTNL8;nc|ENSG00000113303|Q6UX41-2|BTNL8;nc|ENSG00000113303|Q6UX41-3|BTNL8;nc|ENSG00000113303|Q6UX41-5|BTNL8	nc|ENSG00000113303|Q6UX41-7|BTNL8	nc|ENSG00000113303|Q6UX41-7|BTNL8	MSMS	A375_MHC_IP_R2	2	596.2987060546875	2	596.322045	1190.62954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.002	1	58.751	58.251	59.251	0.74894								0	0	0	0.15353	1	21939	21939		9.3831	1.473	1				19180	3140	13800	13904	18786	18786					0.04184782189190628
GYVLSKEALK	10	Unmodified	_GYVLSKEALK_					0	0	0		nc|ENSG00000106392|Q9NS00-2|C1GALT1;ENSG00000106392|ENST00000436587|C1GALT1	nc|ENSG00000106392|Q9NS00-2|C1GALT1	nc|ENSG00000106392|Q9NS00-2|C1GALT1	MULTI-MSMS	A375_MHC_IP_R2	2	369.9148864746094	3	369.88513	1106.63356	0.011766	4.352E-06	-0.056567	-2.0923E-05	-0.044801	-1.6571E-05	369.8850528211981	19.693	0.45602	20.304	19.993	20.449	0.61029					13	8	3	0	0	0	0.72358	1	5954	5954		1.7423	0.41263	1	1093800			19181	2687	13801	13905	18787	18787					0.08450871682885008
GYYDRMDYEDD	11	Unmodified	_GYYDRMDYEDD_					0	0	0		ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MSMS	A375_MHC_IP_R2	2	721.2656860351562	2	721.264264	1440.51397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.106	1	59.853	59.353	60.353	0.74714								0	0	0	0.16331	1	22366	22366		1.4819	0	1				19182	1035	13802	13906	18788	18788					-0.1886615451464877
GYYTKTCSYY	10	Unmodified	_GYYTKTCSYY_					0	0	0		tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1	tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1	tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	417.24627685546875	3	416.846235	1247.51688	0.25696	0.00010711	-0.16794	-7.0006E-05	0.089013	3.7105E-05	416.8461489535247	54.766	0.45807	54.766	54.567	55.025	0					21	8	3	0	0	0	0.89761	1	19586	19586		19.626	3.0601	1	5414800			19183	29943	13803	13907	18789	18789					-0.0969823459915915
GYYTKTCSYY	10	Unmodified	_GYYTKTCSYY_					0	0	0		tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1	tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1	tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	417.2461853027344	3	416.846235	1247.51688	-0.35629	-0.00014852	-0.13329	-5.5561E-05	-0.48958	-0.00020408	416.8462199641763	54.097	0.40749	54.848	54.661	55.068	0.75105					17	7	3	0	0	0	0.57505	1	20406	20406		14.957	2.7824	1	5842700			19184	29943	13803	13907	18790	18790					-0.0969823459915915
GYYTSLDYI	9	Unmodified	_GYYTSLDYI_					0	0	0		ENSG00000152503|ENST00000513154|TRIM36;nc|ENSG00000152503|Q9NQ86|TRIM36	ENSG00000152503|ENST00000513154|TRIM36	ENSG00000152503|ENST00000513154|TRIM36	MULTI-SECPEP	A375_MHC_IP_R1	1	547.1702880859375	2	547.755672	1093.49679	-0.91006	-0.00049849	-1.7348	-0.00095026	-2.6449	-0.0014487	547.7545178358287	41.462	0.35691	41.462	41.317	41.674	0					8	6	2	0	0	0	0.69504	1	14284	14284		7.9102	0	1	583330			19185	5970	13804	13908	18791	18791					-0.04621662267481952
HAAPFSKVL	9	Unmodified	_HAAPFSKVL_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1;ENSG00000170606|ENST00000304858|HSPA4	nc|ENSG00000120694|Q92598-2|HSPH1;ENSG00000170606|ENST00000304858|HSPA4	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-SECPEP	A375_MHC_IP_R1	1	484.6657409667969	2	485.279452	968.544351	-0.18392	-8.9253E-05	0.13432	6.5183E-05	-0.049601	-2.407E-05	485.27897745114797	42.218	0.30416	42.218	42.082	42.386	0					12	5	3	0	0	0	0.67483	1	14603	14603		10.074	8.2297	1	1143100			19186	3678;7525	13805	13909	18792	18792					0.05882081514039328
HAATTSLSW	9	Unmodified	_HAATTSLSW_					0	0	0		ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A	ENSG00000100644|ENST00000337138|HIF1A	ENSG00000100644|ENST00000337138|HIF1A	MULTI-MSMS	A375_MHC_IP_R1	1	487.6402893066406	2	487.240524	972.466495	0.11821	5.7596E-05	1.2011	0.00058521	1.3193	0.00064281	487.2410144794623	48.373	0.81064	48.373	48.071	48.882	0					42	15	3	0	0	0	0.015336	2	17026	17026;17068		89.427	43.406	1	12924000			19187	2206	13806	13910	18793;18794	18793					-0.020839761420006653
HAATTSLSW	9	Unmodified	_HAATTSLSW_					0	0	0		ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A	ENSG00000100644|ENST00000337138|HIF1A	ENSG00000100644|ENST00000337138|HIF1A	MULTI-MSMS	A375_MHC_IP_R2	2	487.64007568359375	2	487.240524	972.466495	-0.43691	-0.00021288	0.39694	0.0001934	-0.039966	-1.9473E-05	487.24072895242233	47.6	0.6632	48.361	47.919	48.582	0.76128					31	12	3	0	0	0	0.015336	2	17790	17755;17790		89.427	45.568	1	9742200			19188	2206	13806	13910	18795;18796	18796					-0.020839761420006653
HADVSNQLY	9	Unmodified	_HADVSNQLY_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-SECPEP	A375_MHC_IP_R1	1	524.1487426757812	2	523.748713	1045.48287	-0.51243	-0.00026838	0.51231	0.00026832	-0.00011174	-5.8521E-08	523.7488676941302	33.36	0.60839	33.36	32.989	33.597	0					19	11	4	0	0	0	0.4261	1	10924	10924		37.974	14.826	1	2941900			19189	5680	13807	13911	18797	18797					-0.03804894975883144
HADVSNQLY	9	Unmodified	_HADVSNQLY_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-SECPEP	A375_MHC_IP_R2	2	524.1486206054688	2	523.748713	1045.48287	-0.59524	-0.00031176	0.39686	0.00020786	-0.19838	-0.0001039	523.7488521902147	32.65	0.55937	33.387	33.112	33.671	0.73692					17	10	2	0	0	0	0.3213	1	11655	11655		46.021	9.9768	1	4451100			19190	5680	13807	13911	18798	18798					-0.03804894975883144
HAEYEEETL	9	Unmodified	_HAEYEEETL_					0	0	0			REV__ENSG00000197818|ENST00000361573|SLC9A8	REV__ENSG00000197818|ENST00000361573|SLC9A8	MSMS	A375_MHC_IP_R1	1	560.7063598632812	2	560.743293	1119.47203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.936	1	90.936	90.436	91.436	0								0	0	0	0.15486	1	33412	33412		7.9102	0	1		+		19191	22319	13808	13912	18799	18799					-0.08292342140839537
HAFAGLGC	8	Unmodified	_HAFAGLGC_					0	0	0		ENST00000568555.1_1_15:34819771-34820455:-|nuORF;ENST00000342314.9_1_15:34819771-34820455:-|nuORF	ENST00000568555.1_1_15:34819771-34820455:-|nuORF	ENST00000568555.1_1_15:34819771-34820455:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	388.5817565917969	2	388.181423	774.348294	-0.055605	-2.1585E-05	0.84189	0.00032681	0.78628	0.00030522	388.18168207545887	133.84	0.40802	133.84	133.56	133.97	0					10	7	2	0	0	0	0.77781	1	51635	51635		2.8892	2.8892	1	4044800			19192	10876	13809	13913	18800	18800					-0.047906269315149075
HAFAGLGC	8	Unmodified	_HAFAGLGC_					0	0	0		ENST00000568555.1_1_15:34819771-34820455:-|nuORF;ENST00000342314.9_1_15:34819771-34820455:-|nuORF	ENST00000568555.1_1_15:34819771-34820455:-|nuORF	ENST00000568555.1_1_15:34819771-34820455:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	388.5816345214844	2	388.181423	774.348294	-0.066796	-2.5929E-05	0.59988	0.00023286	0.53308	0.00020693	388.1816068536457	134.51	0.5567	134.51	134.32	134.88	0					17	10	2	0	0	0	0.77781	1	51878	51878		2.8892	2.8892	1	3906400			19193	10876	13809	13913	18801	18801					-0.047906269315149075
HAFAGLGC	8	Unmodified	_HAFAGLGC_					0	0	0		ENST00000568555.1_1_15:34819771-34820455:-|nuORF;ENST00000342314.9_1_15:34819771-34820455:-|nuORF	ENST00000568555.1_1_15:34819771-34820455:-|nuORF	ENST00000568555.1_1_15:34819771-34820455:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	388.5816345214844	2	388.181423	774.348294	-0.065643	-2.5481E-05	0.70463	0.00027352	0.63898	0.00024804	388.1815928701402	133.73	0.35675	133.9	133.65	134.01	0.16487					9	6	2	0	0	0	0.77781	1	52625	52625		2.8892	2.8892	1	3115700			19194	10876	13809	13913	18802	18802					-0.047906269315149075
HAFAGLGC	8	Unmodified	_HAFAGLGC_					0	0	0		ENST00000568555.1_1_15:34819771-34820455:-|nuORF;ENST00000342314.9_1_15:34819771-34820455:-|nuORF	ENST00000568555.1_1_15:34819771-34820455:-|nuORF	ENST00000568555.1_1_15:34819771-34820455:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	388.5814208984375	2	388.181423	774.348294	-0.042012	-1.6308E-05	0.83824	0.00032539	0.79623	0.00030908	388.1816847976332	134.52	0.60855	134.66	134.39	135	0.13901					19	11	2	0	0	0	0.77781	1	52889	52889		2.8892	2.8892	1	3847400			19195	10876	13809	13913	18803	18803					-0.047906269315149075
HAFAGLGC	8	Unmodified	_HAFAGLGC_					0	0	0		ENST00000568555.1_1_15:34819771-34820455:-|nuORF;ENST00000342314.9_1_15:34819771-34820455:-|nuORF	ENST00000568555.1_1_15:34819771-34820455:-|nuORF	ENST00000568555.1_1_15:34819771-34820455:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	388.181423	774.348294	-0.066796	-2.5929E-05	0.59988	0.00023286	0.53308	0.00020693	388.1816068536457	134.51	0.5567	134.51	134.32	134.88	0	-0.071573	-6.6805E-05	NaN	2.8892	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3906400			19196	10876	13809	13913							-0.047906269315149075
HAFAGLGC	8	Unmodified	_HAFAGLGC_					0	0	0		ENST00000568555.1_1_15:34819771-34820455:-|nuORF;ENST00000342314.9_1_15:34819771-34820455:-|nuORF	ENST00000568555.1_1_15:34819771-34820455:-|nuORF	ENST00000568555.1_1_15:34819771-34820455:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	388.181423	774.348294	-0.055605	-2.1585E-05	0.84189	0.00032681	0.78628	0.00030522	388.18168207545887	133.84	0.40802	133.84	133.56	133.97	0	-0.030871	5.5594E-05	NaN	2.8892	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4044800			19197	10876	13809	13913							-0.047906269315149075
HAFAGLGC	8	Unmodified	_HAFAGLGC_					0	0	0		ENST00000568555.1_1_15:34819771-34820455:-|nuORF;ENST00000342314.9_1_15:34819771-34820455:-|nuORF	ENST00000568555.1_1_15:34819771-34820455:-|nuORF	ENST00000568555.1_1_15:34819771-34820455:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	388.181423	774.348294	-0.042012	-1.6308E-05	0.83824	0.00032539	0.79623	0.00030908	388.1816847976332	134.52	0.60855	134.66	134.39	135	0.13901	0.071573	0.00011825	NaN	2.8892	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3847400			19198	10876	13809	13913							-0.047906269315149075
HAFAGLGC	8	Unmodified	_HAFAGLGC_					0	0	0		ENST00000568555.1_1_15:34819771-34820455:-|nuORF;ENST00000342314.9_1_15:34819771-34820455:-|nuORF	ENST00000568555.1_1_15:34819771-34820455:-|nuORF	ENST00000568555.1_1_15:34819771-34820455:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	388.181423	774.348294	-0.065643	-2.5481E-05	0.70463	0.00027352	0.63898	0.00024804	388.1815928701402	133.73	0.35675	133.9	133.65	134.01	0.16487	0.030871	-5.097E-05	NaN	2.8892	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3115700			19199	10876	13809	13913							-0.047906269315149075
HAFDGRPSV	9	Unmodified	_HAFDGRPSV_					0	0	0		nc|ENSG00000203705|Q17R31-5|TATDN3;nc|ENSG00000203705|Q17R31-4|TATDN3;nc|ENSG00000203705|Q17R31-2|TATDN3;ENSG00000203705|ENST00000366974|TATDN3;nc|ENSG00000203705|Q17R31-3|TATDN3	nc|ENSG00000203705|Q17R31-5|TATDN3	nc|ENSG00000203705|Q17R31-5|TATDN3	MULTI-MSMS	A375_MHC_IP_R1	1	493.6453552246094	2	493.246141	984.477728	-0.55	-0.00027128	0.17738	8.7491E-05	-0.37262	-0.00018379	493.2461618732532	25.757	0.45464	25.757	25.613	26.068	0					13	8	2	0	0	0	0.32889	1	7603	7603		28.495	6.7479	1	2794800			19200	9391	13810	13914	18804	18804					-0.015131540478591887
HAFDGRPSV	9	Unmodified	_HAFDGRPSV_					0	0	0		nc|ENSG00000203705|Q17R31-5|TATDN3;nc|ENSG00000203705|Q17R31-4|TATDN3;nc|ENSG00000203705|Q17R31-2|TATDN3;ENSG00000203705|ENST00000366974|TATDN3;nc|ENSG00000203705|Q17R31-3|TATDN3	nc|ENSG00000203705|Q17R31-5|TATDN3	nc|ENSG00000203705|Q17R31-5|TATDN3	MULTI-SECPEP	A375_MHC_IP_R2	2	493.3189392089844	2	493.246141	984.477728	-0.93605	-0.0004617	-0.063402	-3.1273E-05	-0.99945	-0.00049297	493.24596291824	25.133	0.50908	25.777	25.668	26.178	0.64368					12	9	2	0	0	0	0.57304	1	8369	8369		23.79	4.5328	1	2141700			19201	9391	13810	13914	18805	18805					-0.015131540478591887
HAFEIIHL	8	Unmodified	_HAFEIIHL_					0	0	0		ENST00000598807.1_1_19:58899504-58905010:+|nuORF;ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58904459-58904744:+|nuORF	ENST00000598807.1_1_19:58899504-58905010:+|nuORF	ENST00000598807.1_1_19:58899504-58905010:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	490.6718444824219	2	490.271627	978.528701	-0.33943	-0.00016641	0.024289	1.1908E-05	-0.31514	-0.00015451	490.27159725177955	75.988	0.75693	75.988	75.664	76.421	0					31	14	3	0	0	0	0.035774	1	27676	27676		106.85	47.05	1	7536400			19202	1790	13811	13915	18806	18806					0.038577949969976544
HAFEIIHL	8	Unmodified	_HAFEIIHL_					0	0	0		ENST00000598807.1_1_19:58899504-58905010:+|nuORF;ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58904459-58904744:+|nuORF	ENST00000598807.1_1_19:58899504-58905010:+|nuORF	ENST00000598807.1_1_19:58899504-58905010:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	490.67193603515625	2	490.271627	978.528701	-0.60119	-0.00029475	0.2058	0.0001009	-0.39538	-0.00019385	490.27161227582775	74.962	0.9142	75.699	75.365	76.279	0.73752					33	17	3	0	0	0	0.34394	1	28420	28420		42.095	17.421	1	4834300			19203	1790	13811	13915	18807	18807					0.038577949969976544
HAFIQPEI	8	Unmodified	_HAFIQPEI_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MULTI-SECPEP	A375_MHC_IP_R1	1	478.1559753417969	2	477.75581	953.497067	-0.57132	-0.00027295	0.29189	0.00013945	-0.27944	-0.0001335	477.7561212599268	65.07	0.55984	65.07	64.851	65.411	0					23	10	3	0	0	0	0.78043	1	23580	23580		40.449	4.4044	1	2602000			19204	7484	13812	13916	18808	18808					0.01845802243030903
HAFIQPEI	8	Unmodified	_HAFIQPEI_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MULTI-SECPEP	A375_MHC_IP_R2	2	478.15545654296875	2	477.75581	953.497067	-0.46562	-0.00022245	-0.67955	-0.00032466	-1.1452	-0.00054711	477.7556799221528	64.183	0.61054	64.923	64.597	65.208	0.74023					23	11	3	0	0	0	0.64068	1	24338	24338		49.669	19.444	1	1507800			19205	7484	13812	13916	18809	18809					0.01845802243030903
HAFKISKIY	9	Unmodified	_HAFKISKIY_					0	0	0		ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4	ENSG00000141076|ENST00000314423|UTP4	ENSG00000141076|ENST00000314423|UTP4	MULTI-MSMS	A375_MHC_IP_R2	2	369.95001220703125	3	369.550082	1105.62842	0.27708	0.0001024	0.57832	0.00021372	0.8554	0.00031611	369.55027955950885	44.413	0.55842	45.182	44.985	45.543	0.7691					22	10	3	0	0	0	0.68705	1	16579	16579		8.1555	0.54658	1	4349600			19206	5212	13813	13917	18810	18810					0.07982612610953765
HAFSLRDNV	9	Unmodified	_HAFSLRDNV_					0	0	0			REV__nc|ENSG00000284797|A0A2R8Y7Y5|CIST1	REV__nc|ENSG00000284797|A0A2R8Y7Y5|CIST1	MULTI-SECPEP	A375_MHC_IP_R2	2	353.2659606933594	3	353.51744	1057.53049	-0.47928	-0.00016943	-0.28842	-0.00010196	-0.7677	-0.0002714	353.51731860564655	24.086	0.20405	24.73	24.602	24.806	0.64368					6	3	2	0	0	0	0.79683	1	7850	7850		1.1933	0	1	2964400	+		19207	27551	13814	13918	18811	18811					0.0040280401492509554
HAGEGLVDEQL	11	Unmodified	_HAGEGLVDEQL_					0	0	0			REV__nc|ENSG00000099875|Q9HBH9-2|MKNK2	REV__nc|ENSG00000099875|Q9HBH9-2|MKNK2	MSMS	A375_MHC_IP_R1	1	584.2046508789062	2	584.28566	1166.55677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.08	1	126.08	125.58	126.58	0								0	0	0	0.13933	1	48100	48100		27.223	14.692	1		+		19208	17032	13815	13919	18812	18812					-0.019849716042244836
HAGPIRVV	8	Unmodified	_HAGPIRVV_					0	0	0		ENSG00000266967|ENST00000427569|AARSD1;nc|ENSG00000266967|Q9BTE6-2|AARSD1;nc|ENSG00000266967|Q9BTE6-3|AARSD1;ENST00000486664.5_1_17:41107347-41108531:-|nuORF;ENST00000441280.7_1_17:41108193-41116457:-|nuORF	ENSG00000266967|ENST00000427569|AARSD1;ENST00000441280.7_1_17:41108193-41116457:-|nuORF	ENSG00000266967|ENST00000427569|AARSD1	MULTI-MSMS	A375_MHC_IP_R1	1	425.1585693359375	2	424.758687	847.502821	-0.32826	-0.00013943	0.29783	0.00012651	-0.030424	-1.2923E-05	424.7587771632879	26.966	0.70362	26.966	26.728	27.432	0					30	13	3	0	0	0	0.0057975	1	8090	8090		152.78	109.82	1	26012000			19209	9963;11982	13816	13920	18813	18813					0.07296945545363087
HAGPIRVV	8	Unmodified	_HAGPIRVV_					0	0	0		ENSG00000266967|ENST00000427569|AARSD1;nc|ENSG00000266967|Q9BTE6-2|AARSD1;nc|ENSG00000266967|Q9BTE6-3|AARSD1;ENST00000486664.5_1_17:41107347-41108531:-|nuORF;ENST00000441280.7_1_17:41108193-41116457:-|nuORF	ENSG00000266967|ENST00000427569|AARSD1;ENST00000441280.7_1_17:41108193-41116457:-|nuORF	ENSG00000266967|ENST00000427569|AARSD1	MULTI-MSMS	A375_MHC_IP_R2	2	425.1581726074219	2	424.758687	847.502821	-0.57313	-0.00024344	0.21321	9.0562E-05	-0.35992	-0.00015288	424.7587240644701	26.171	0.71104	26.831	26.602	27.313	0.65992					26	13	3	0	0	0	0.0057975	1	8804	8804		152.78	105.86	1	20697000			19210	9963;11982	13816	13920	18814	18814					0.07296945545363087
HAGPIVSVW	9	Unmodified	_HAGPIVSVW_					0	0	0		ENSG00000101413|ENST00000373433|RPRD1B	ENSG00000101413|ENST00000373433|RPRD1B	ENSG00000101413|ENST00000373433|RPRD1B	MSMS	A375_MHC_IP_R1	1	483.1764831542969	2	483.263802	964.513051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.735	1	75.735	75.235	76.235	0								0	0	0	0.067776	1	27595	27595		49.669	21.182	1				19211	2290	13817	13921	18815	18815					0.029375084799426077
HAGPIVSVW	9	Unmodified	_HAGPIVSVW_					0	0	0		ENSG00000101413|ENST00000373433|RPRD1B	ENSG00000101413|ENST00000373433|RPRD1B	ENSG00000101413|ENST00000373433|RPRD1B	MULTI-MSMS	A375_MHC_IP_R2	2	483.1762390136719	2	483.263802	964.513051	-0.65242	-0.00031529	0.23762	0.00011484	-0.41479	-0.00020045	483.2637120625994	74.835	0.45673	75.573	75.365	75.822	0.73752					19	8	4	0	0	0	0.10558	1	28410	28410		49.669	13.625	1	1370900			19212	2290	13817	13921	18816	18816					0.029375084799426077
HAGTILIMVPL	11	Unmodified	_HAGTILIMVPL_					0	0	0			REV__ENST00000511187.1_1_4:44709760-44728589:-|nuORF	REV__ENST00000511187.1_1_4:44709760-44728589:-|nuORF	MSMS	A375_MHC_IP_R1	1	582.7417602539062	2	582.844102	1163.67365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.88	1	143.88	143.38	144.38	0								0	0	0	0.16297	1	55188	55188		3.2813	0.70383	1		+		19213	25612	13818	13922	18817	18817					0.0983609508182326
HAIKSVKIY	9	Unmodified	_HAIKSVKIY_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-SECPEP	A375_MHC_IP_R1	1	353.9498291015625	3	353.550082	1057.62842	-0.097376	-3.4427E-05	-0.26346	-9.3147E-05	-0.36084	-0.00012757	353.54987298594597	24.878	0.60685	24.878	24.597	25.204	0					24	11	4	0	0	0	0.022401	1	7159	7159		91.085	48.772	1	32552000			19214	4177	13819	13923	18818	18818					0.10190612610949756
HAIKSVKIY	9	Unmodified	_HAIKSVKIY_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-SECPEP	A375_MHC_IP_R2	2	353.9496765136719	3	353.550082	1057.62842	-0.51045	-0.00018047	-0.19252	-6.8064E-05	-0.70296	-0.00024853	353.5499215519006	24.238	0.76464	24.882	24.499	25.263	0.64368					28	14	4	0	0	0	0.036758	1	7914	7914		73.196	45.973	1	30915000			19215	4177	13819	13923	18819	18819					0.10190612610949756
HAILDLEAEK	10	Unmodified	_HAILDLEAEK_					0	0	0			REV__ENST00000490134.1_1_9:108358879-108358948:+|nuORF	REV__ENST00000490134.1_1_9:108358879-108358948:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	570.2091674804688	2	569.808771	1137.60299	-0.49772	-0.00028361	0.49788	0.0002837	0.0001619	9.2252E-08	569.8092066488799	37.792	0.56441	38.566	38.382	38.946	0.77451					19	10	3	0	0	0	0.69726	1	13888	13888		20.415	0	1	3705000	+		19216	25381	13820	13924	18820	18820					0.03969093297860127
HAIYISFI	8	Unmodified	_HAIYISFI_					0	0	0		ENST00000409185.5_1_2:131807576-131807882:-|nuORF	ENST00000409185.5_1_2:131807576-131807882:-|nuORF	ENST00000409185.5_1_2:131807576-131807882:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	482.6679992675781	2	482.268553	962.522553	-0.45342	-0.00021867	0.18549	8.9457E-05	-0.26793	-0.00012921	482.2684159717259	109.75	0.81368	110.5	110.08	110.9	0.74683					38	15	4	0	0	0	0.25325	1	41389	41389		63.394	0	1	2280400			19217	11625	13821	13925	18821	18821					0.03979276765460327
HALHRRKDHDE	11	Unmodified	_HALHRRKDHDE_					0	0	0			REV__nc|ENSG00000171634|Q12830-4|BPTF	REV__nc|ENSG00000171634|Q12830-4|BPTF	MSMS	A375_MHC_IP_R1	1	707.2901000976562	2	707.358348	1412.70214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.35	1	127.35	126.85	127.85	0								0	0	0	0.16191	1	48787	48787		8.7454	0.58988	1		+		19218	21084	13822	13926	18822	18822					0.012299290353439574
HALPLYSIAV	10	Unmodified	_HALPLYSIAV_					0	0	0			REV__nc|ENSG00000197142|Q9ULC5-4|ACSL5	REV__nc|ENSG00000197142|Q9ULC5-4|ACSL5	MULTI-SECPEP	A375_MHC_IP_R1	1	542.713134765625	2	542.313492	1082.61243	-0.47669	-0.00025851	-0.064925	-3.521E-05	-0.54161	-0.00029372	542.3133953041504	47.668	0.75631	47.668	47.416	48.173	0					39	14	4	0	0	0	0.43292	1	16754	16754		39.957	24.11	1	9470200	+		19219	22261	13823	13927	18823	18823					0.07442906374035374
HALPLYSIAV	10	Unmodified	_HALPLYSIAV_					0	0	0			REV__nc|ENSG00000197142|Q9ULC5-4|ACSL5	REV__nc|ENSG00000197142|Q9ULC5-4|ACSL5	MULTI-SECPEP	A375_MHC_IP_R2	2	542.7127685546875	2	542.313492	1082.61243	-0.64637	-0.00035053	-0.048753	-2.6439E-05	-0.69512	-0.00037697	542.3134213874505	46.776	0.76388	47.538	47.258	48.022	0.76128					32	14	3	0	0	0	0.43292	1	17497	17497		39.957	24.11	1	10125000	+		19220	22261	13823	13927	18824	18824					0.07442906374035374
HALPPCFSLQ	10	Unmodified	_HALPPCFSLQ_					0	0	0		ENST00000486738.5_1_X:153608322-153609415:+|nuORF	ENST00000486738.5_1_X:153608322-153609415:+|nuORF	ENST00000486738.5_1_X:153608322-153609415:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	557.177734375	2	556.781502	1111.54845	-0.47005	-0.00026172	-4.1172	-0.0022924	-4.5872	-0.0025541	556.7780068927887	43.578	1.4263	43.578	42.79	44.216	0					37	16	4	0	0	0	0.50967	1	15141	15141		27.629	4.4804	1	9248600			19221	12586	13824	13928	18825	18825					-0.002861970545609438
HALPRPTGSF	10	Unmodified	_HALPRPTGSF_					0	0	0		ENSG00000260220|ENST00000638797|CCDC187;nc|ENSG00000260220|A0A096LP49-2|CCDC187;nc|ENSG00000260220|A0A096LP49|CCDC187	ENSG00000260220|ENST00000638797|CCDC187	ENSG00000260220|ENST00000638797|CCDC187	MULTI-SECPEP	A375_MHC_IP_R1	1	542.1905517578125	2	541.790715	1081.56688	-0.82794	-0.00044857	0.27788	0.00015056	-0.55005	-0.00029801	541.7907207565664	36.562	1.1654	36.562	36.084	37.249	0					39	22	2	0	0	0	0.90513	1	12244	12244		12.241	1.4167	1	2607800			19222	9928	13825	13929	18826	18826					0.02935680911673444
HALPRPTGSF	10	Unmodified	_HALPRPTGSF_					0	0	0		ENSG00000260220|ENST00000638797|CCDC187;nc|ENSG00000260220|A0A096LP49-2|CCDC187;nc|ENSG00000260220|A0A096LP49|CCDC187	ENSG00000260220|ENST00000638797|CCDC187	ENSG00000260220|ENST00000638797|CCDC187	MULTI-SECPEP	A375_MHC_IP_R2	2	542.1903686523438	2	541.790715	1081.56688	-1.0135	-0.0005491	0.2646	0.00014336	-0.74889	-0.00040574	541.7907226114361	35.739	0.96673	36.502	36.03	36.997	0.76338					41	18	3	0	0	0	0.63381	1	13057	13057		31.268	12.011	1	3061600			19223	9928	13825	13929	18827	18827					0.02935680911673444
HALQHLQLSLL	11	Unmodified	_HALQHLQLSLL_					0	0	0			REV__ENST00000480930.5_1_1:28879622-28887666:+|nuORF	REV__ENST00000480930.5_1_1:28879622-28887666:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	425.31866455078125	3	424.918945	1271.73501	-0.38839	-0.00016503	-0.082657	-3.5122E-05	-0.47104	-0.00020016	424.9188997596965	40.912	0.45708	41.687	41.438	41.895	0.77451					20	8	3	0	0	0	0.73016	1	15164	15164		8.7518	1.2747	1	4105800	+		19224	25251	13826	13930	18828	18828					0.1100074310547825
HALYKGFNY	9	Unmodified	_HALYKGFNY_					0	0	0			REV__nc|ENSG00000124253|P35558-2|PCK1	REV__nc|ENSG00000124253|P35558-2|PCK1	MULTI-MSMS	A375_MHC_IP_R2	2	557.7216186523438	2	556.779816	1111.54508	-0.69059	-0.0003845	-1.2314	-0.00068562	-1.922	-0.0010701	556.7778258632055	42.674	0.76041	43.446	43.116	43.876	0.7724					44	14	5	0	0	0	0.64136	1	15852	15852		18.135	4.2289	1	9692600	+		19225	18292	13827	13931	18829	18829					-0.006231238369082348
HALYKGFNY	9	Unmodified	_HALYKGFNY_					0	0	0			REV__nc|ENSG00000124253|P35558-2|PCK1	REV__nc|ENSG00000124253|P35558-2|PCK1	MULTI-SECPEP	A375_MHC_IP_R2	2	557.1773681640625	2	556.779816	1111.54508	-0.69059	-0.0003845	-1.2314	-0.00068562	-1.922	-0.0010701	556.7778258632055	42.674	0.76041	43.446	43.116	43.876	0.7724					44	14	5	0	0	0	0.55359	1	15875	15875		21.747	0	1	9692600	+		19226	18292	13827	13931	18830	18830					-0.006231238369082348
HANGRYDQH	9	Unmodified	_HANGRYDQH_					0	0	0		CON__P09870	CON__P09870	CON__P09870	MULTI-MSMS	A375_MHC_IP_R2	2	366.4358215332031	3	366.500561	1096.47985	-0.3251	-0.00011915	-0.33352	-0.00012224	-0.65863	-0.00024139	366.5003813073946	25.182	0.30773	25.826	25.668	25.976	0.64368					8	5	2	0	0	0	0.64808	1	8378	8378		7.609	0	1	1120700		+	19227	595	13828	13932	18831	18831					-0.0645272531005503
HAPCRAQKEF	10	Unmodified	_HAPCRAQKEF_					0	0	0			REV__ENST00000304523.9_1_4:16900005-16900254:-|nuORF	REV__ENST00000304523.9_1_4:16900005-16900254:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	396.5840148925781	3	396.197713	1185.57131	-0.092649	-3.6707E-05	-0.49647	-0.0001967	-0.58912	-0.00023341	396.19614945083526	34.733	0.45544	34.733	34.456	34.912	0					19	8	4	0	0	0	0.87163	1	11384	11384		12.175	0.65687	1	3487100	+		19228	23456	13829	13933	18832	18832					-0.014051779371129669
HAPFIPPSV	9	Unmodified	_HAPFIPPSV_					0	0	0			REV__nc|ENSG00000188994|O60281-2|ZNF292	REV__nc|ENSG00000188994|O60281-2|ZNF292	MSMS	A375_MHC_IP_R1	1	482.6664123535156	2	482.766178	963.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.588	1	45.588	45.088	46.088	0								0	0	0	0.1499	1	15960	15960		21.747	2.3076	1		+		19229	22131	13830	13934	18833	18833					0.03458392622701467
HAPWLKWWRML	11	Unmodified	_HAPWLKWWRML_					0	0	0			REV__ENST00000330333.10_1_21:42615402-42617988:+|nuORF	REV__ENST00000330333.10_1_21:42615402-42617988:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	508.7047119140625	3	508.607936	1522.80198	-0.66666	-0.00033907	0.099071	5.0388E-05	-0.56759	-0.00028868	508.60797062437445	133.09	0.91893	133.09	132.69	133.61	0					31	17	2	0	0	0	0.73881	1	51236	51236		0.50596	0	1	3867000	+		19230	23618	13831	13935	18834	18834					0.06149075115558844
HAQDYPQQL	9	Unmodified	_HAQDYPQQL_					0	0	0			REV__SNAI1|p.F31L|1|0.54|ENSG00000124216|chr20:49983834-49983834|C/A|missense_variant	REV__SNAI1|p.F31L|1|0.54|ENSG00000124216|chr20:49983834-49983834|C/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	550.6610717773438	2	550.261988	1098.50942	-0.69987	-0.00038511	-0.053434	-2.9402E-05	-0.7533	-0.00041451	550.261864264271	42.93	0.50476	43.703	43.472	43.977	0.7724					18	9	3	0	0	0	0.65721	1	15996	15996		10.824	1.4408	1	3459000	+		19231	28018	13832	13936	18835	18835					-0.035892060845753804
HARPEEPSW	9	Unmodified	_HARPEEPSW_					0	0	0		ENSG00000047621|ENST00000261250|C12orf4	ENSG00000047621|ENST00000261250|C12orf4	ENSG00000047621|ENST00000261250|C12orf4	MULTI-MSMS	A375_MHC_IP_R2	2	555.1624145507812	2	554.762155	1107.50976	-1.1854	-0.0006576	-4.1404	-0.0022969	-5.3258	-0.0029545	554.7629297271989	26.26	1.0172	26.92	26.245	27.262	0.65992					53	19	5	0	0	0	0.062639	1	8920	8920		59.368	27.063	1	6495000			19232	1203	13833	13937	18836	18836					-0.039697863647234044
HASDRIIAL	9	Unmodified	_HASDRIIAL_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF;ENST00000469678.1_1_3:53259917-53265542:-|nuORF	ENSG00000163931|ENST00000462138|TKT;ENST00000469678.1_1_3:53259917-53265542:-|nuORF	ENSG00000163931|ENST00000462138|TKT	MULTI-SECPEP	A375_MHC_IP_R1	1	498.6849060058594	2	498.285266	994.555979	-0.37059	-0.00018466	0.2289	0.00011406	-0.14168	-7.0599E-05	498.28540199697835	43.833	2.1849	43.833	43.502	45.687	0					113	42	6	0	0	0	0.011066	1	15201	15201		125.53	77.78	1	225910000			19233	6745;12325	13834	13938	18837	18837					0.058482785373598745
HASDRIIAL	9	Unmodified	_HASDRIIAL_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF;ENST00000469678.1_1_3:53259917-53265542:-|nuORF	ENSG00000163931|ENST00000462138|TKT;ENST00000469678.1_1_3:53259917-53265542:-|nuORF	ENSG00000163931|ENST00000462138|TKT	MULTI-SECPEP	A375_MHC_IP_R2	2	498.6846618652344	2	498.285266	994.555979	-0.44226	-0.00022037	-0.25415	-0.00012664	-0.69641	-0.00034701	498.28513260627625	42.822	1.7704	43.594	43.218	44.988	0.7724					94	34	5	0	0	0	0.010874	1	15879	15879		137.42	78.745	1	160940000			19234	6745;12325	13834	13938	18838	18838					0.058482785373598745
HASPVRPTV	9	Unmodified	_HASPVRPTV_					0	0	0		ENST00000332780.3_1_3:49209094-49210164:+|nuORF	ENST00000332780.3_1_3:49209094-49210164:+|nuORF	ENST00000332780.3_1_3:49209094-49210164:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	482.6720275878906	2	482.272158	962.529764	-0.36062	-0.00017392	0.090093	4.3449E-05	-0.27053	-0.00013047	482.27219589911215	19.968	0.40461	19.968	19.776	20.18	0					12	7	2	0	0	0	0.32092	1	5098	5098		29.082	5.061	1	1220900			19235	10779	13835	13939	18839	18839					0.04700009365888036
HASTLHRLY	9	Unmodified	_HASTLHRLY_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	A375_MHC_IP_R1	1	366.9333190917969	3	366.533202	1096.57778	0.49764	0.0001824	0.080137	2.9373E-05	0.57777	0.00021177	366.53318401970336	22.916	0.60472	22.916	22.52	23.125	0					33	11	4	0	0	0	0.0045836	1	6148	6148		135.86	90.124	1	25142000			19236	2743	13836	13940	18840	18840					0.03335083285946894
HASTLHRLY	9	Unmodified	_HASTLHRLY_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-SECPEP	A375_MHC_IP_R1	1	366.2735290527344	3	366.533202	1096.57778	0.07367	2.7002E-05	0.39941	0.0001464	0.47308	0.0001734	366.53341751533094	23.355	0.35794	23.355	23.125	23.483	0					9	6	2	0	0	0	0.63749	1	6398	6398		26.021	26.021	1	4296000			19237	2743	13836	13940	18841	18841					0.03335083285946894
HASTLHRLY	9	Unmodified	_HASTLHRLY_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-SECPEP	A375_MHC_IP_R1	1	367.2675476074219	3	366.533202	1096.57778	0.53384	0.00019567	0.13483	4.9418E-05	0.66867	0.00024509	366.5330390127726	21.765	0.60987	21.765	21.403	22.013	0					30	11	5	0	0	0	0.10535	1	5743	5743		75.571	49.55	1	4766100			19238	2743	13836	13940	18842	18842					0.03335083285946894
HASTLHRLY	9	Unmodified	_HASTLHRLY_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	A375_MHC_IP_R2	2	366.93310546875	3	366.533202	1096.57778	-0.19345	-7.0906E-05	0.23454	8.5966E-05	0.041088	1.506E-05	366.53320614298457	19.835	1.1163	20.445	19.79	20.907	0.61029					72	21	5	0	0	0	0.23226	2	6241	6017;6241		35.612	25.538	1	16914000			19239	2743	13836	13940	18843;18844	18844					0.03335083285946894
HASTLHRLY	9	Unmodified	_HASTLHRLY_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-SECPEP	A375_MHC_IP_R2	2	366.9329528808594	3	366.533202	1096.57778	-0.24221	-8.878E-05	-0.21049	-7.7152E-05	-0.45271	-0.00016593	366.53314030876777	22.812	0.35777	23.442	23.265	23.623	0.63014					11	6	3	0	0	0	0.77003	1	7295	7295		11.495	6.092	1	3070800			19240	2743	13836	13940	18845	18845					0.03335083285946894
HATEELKEF	9	Unmodified	_HATEELKEF_					0	0	0		ENSG00000247596|ENST00000305533|TWF2	ENSG00000247596|ENST00000305533|TWF2	ENSG00000247596|ENST00000305533|TWF2	MULTI-SECPEP	A375_MHC_IP_R2	2	552.67138671875	2	552.272021	1102.52949	-1.6089	-0.00088857	1.3021	0.00071912	-0.30683	-0.00016946	552.2724275842353	29.057	0.3969	29.755	29.584	29.981	0.69872					9	7	2	0	0	0	0.061442	1	10154	10154		47.594	19.966	1	7214200			19241	9829	13837	13941	18846	18846					-0.017674551446361875
HATNNLQIIPD	11	Unmodified	_HATNNLQIIPD_					0	0	0		ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1	ENSG00000185722|ENST00000341657|ANKFY1	ENSG00000185722|ENST00000341657|ANKFY1	MULTI-MSMS	A375_MHC_IP_R1	1	618.722900390625	2	618.322576	1234.6306	-0.42084	-0.00026022	0.87904	0.00054353	0.45819	0.00028331	618.3229309904573	58.375	0.40522	58.375	58.177	58.582	0					11	7	2	0	0	0	0.72583	1	20986	20986		12.873	2.722	1	1861100			19242	8687	13838	13942	18847	18847					0.02266996558091705
HAVPGLSQLAM	11	Unmodified	_HAVPGLSQLAM_					0	0	0			REV__ENST00000330714.7_1_21:42780219-42780591:+|nuORF	REV__ENST00000330714.7_1_21:42780219-42780591:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	562.6986083984375	2	562.300059	1122.58556	-0.55511	-0.00031214	-1.323	-0.00074395	-1.8781	-0.0010561	562.2984088874712	96.172	0.91276	96.923	96.551	97.464	0.75045					28	17	3	0	0	0	0.76597	1	36581	36581		34.932	4.7073	1	1209200	+		19243	23624	13839	13943	18848	18848					0.02917474491187022
HAWMDNIREW	10	Unmodified	_HAWMDNIREW_					0	0	0		ENSG00000204394|ENST00000375663|VARS1;ENST00000483275.1_1_6:31749724-31750195:-|nuORF	ENSG00000204394|ENST00000375663|VARS1	ENSG00000204394|ENST00000375663|VARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	679.0697021484375	2	679.308946	1356.60334	-0.69291	-0.0004707	0.77421	0.00052593	0.0813	5.5227E-05	679.3097135459358	76.367	0.45468	76.367	76.117	76.572	0					12	8	2	0	0	0	0.90144	1	27806	27806		13.615	0	1	1557200			19244	9439	13840	13944	18849	18849					-0.060698102539390675
HAYIISSL	8	Unmodified	_HAYIISSL_					0	0	0		ENSG00000013016|ENST00000322054|EHD3;EHD3|p.E317K|1|0.31|ENSG00000013016|chr2:31261582-31261582|G/A|missense_variant;ENST00000498472.1_1_11:64622667-64627458:-|nuORF;ENSG00000110047|ENST00000320631|EHD1;ENST00000484846.1_1_11:64621807-64623066:-|nuORF	ENSG00000013016|ENST00000322054|EHD3;ENSG00000110047|ENST00000320631|EHD1	ENSG00000110047|ENST00000320631|EHD1	MULTI-MSMS	A375_MHC_IP_R1	1	452.65045166015625	2	452.25036	902.486168	-0.49807	-0.00022525	0.42228	0.00019098	-0.075789	-3.4276E-05	452.25047374390886	67.311	2.54	67.311	66.938	69.478	0					110	49	3	0	0	0	0.17006	1	24529	24529		70.865	10.475	1	32264000			19245	1015;2911	13841	13945	18850	18850					0.031023998687601306
HAYIISSL	8	Unmodified	_HAYIISSL_					0	0	0		ENSG00000013016|ENST00000322054|EHD3;EHD3|p.E317K|1|0.31|ENSG00000013016|chr2:31261582-31261582|G/A|missense_variant;ENST00000498472.1_1_11:64622667-64627458:-|nuORF;ENSG00000110047|ENST00000320631|EHD1;ENST00000484846.1_1_11:64621807-64623066:-|nuORF	ENSG00000013016|ENST00000322054|EHD3;ENSG00000110047|ENST00000320631|EHD1	ENSG00000110047|ENST00000320631|EHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	903.30810546875	1	903.493444	902.486168	-0.47987	-0.00043355	0.56278	0.00050847	0.082918	7.4916E-05	903.493646207548	67.325	0.8147	67.325	66.99	67.804	0					33	15	3	0	0	0	0.85124	1	24565	24565		34.187	14.748	1	5458700			19246	1015;2911	13841	13945	18851	18851					0.031023998687601306
HAYIISSL	8	Unmodified	_HAYIISSL_					0	0	0		ENSG00000013016|ENST00000322054|EHD3;EHD3|p.E317K|1|0.31|ENSG00000013016|chr2:31261582-31261582|G/A|missense_variant;ENST00000498472.1_1_11:64622667-64627458:-|nuORF;ENSG00000110047|ENST00000320631|EHD1;ENST00000484846.1_1_11:64621807-64623066:-|nuORF	ENSG00000013016|ENST00000322054|EHD3;ENSG00000110047|ENST00000320631|EHD1	ENSG00000110047|ENST00000320631|EHD1	MULTI-MSMS	A375_MHC_IP_R2	2	452.65057373046875	2	452.25036	902.486168	-0.39375	-0.00017807	0.18143	8.2054E-05	-0.21232	-9.6021E-05	452.2503742186122	66.275	2.1391	67.011	66.627	68.766	0.73631					99	41	4	0	0	0	0.09336	2	25071	25071;25284		96.119	10.475	1	37592000			19247	1015;2911	13841	13945	18852;18853	18852					0.031023998687601306
HAYIISSL	8	Unmodified	_HAYIISSL_					0	0	0		ENSG00000013016|ENST00000322054|EHD3;EHD3|p.E317K|1|0.31|ENSG00000013016|chr2:31261582-31261582|G/A|missense_variant;ENST00000498472.1_1_11:64622667-64627458:-|nuORF;ENSG00000110047|ENST00000320631|EHD1;ENST00000484846.1_1_11:64621807-64623066:-|nuORF	ENSG00000013016|ENST00000322054|EHD3;ENSG00000110047|ENST00000320631|EHD1	ENSG00000110047|ENST00000320631|EHD1	MULTI-MATCH	A375_MHC_IP_R2	2		1	903.493444	902.486168	-0.5597	-0.00050569	0.33581	0.0003034	-0.22389	-0.00020229	903.4935678147166	66.286	0.71496	67.023	66.78	67.495	0.73631	-0.1514	-0.00010216	NaN	34.187	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5084900			19248	1015;2911	13841	13945							0.031023998687601306
HAYIISYL	8	Unmodified	_HAYIISYL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;ENSG00000103966|ENST00000220325|EHD4	ENSG00000024422|ENST00000263277|EHD2;ENSG00000103966|ENST00000220325|EHD4	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	A375_MHC_IP_R1	1	490.6657409667969	2	490.26601	978.517468	-0.23014	-0.00011283	-0.019077	-9.3529E-06	-0.24922	-0.00012218	490.2659299299532	88.24	1.2726	88.24	87.898	89.171	0					67	24	4	0	0	0	0.16758	2	32350	32300;32350		75.128	13.08	1	25711000			19249	1083;2475	13842	13946	18854;18855	18855					0.027349729028628644
HAYIISYL	8	Unmodified	_HAYIISYL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;ENSG00000103966|ENST00000220325|EHD4	ENSG00000024422|ENST00000263277|EHD2;ENSG00000103966|ENST00000220325|EHD4	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	A375_MHC_IP_R1	1	979.4970703125	1	979.524744	978.517468	0.22215	0.0002176	-0.17783	-0.00017419	0.04432	4.3412E-05	979.5243918763597	88.314	0.50977	88.314	88.052	88.561	0					15	9	2	0	0	0	0.12286	1	32361	32361		90.836	30.446	1	3882100			19250	1083;2475	13842	13946	18856	18856					0.027349729028628644
HAYIISYL	8	Unmodified	_HAYIISYL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;ENSG00000103966|ENST00000220325|EHD4	ENSG00000024422|ENST00000263277|EHD2;ENSG00000103966|ENST00000220325|EHD4	ENSG00000024422|ENST00000263277|EHD2	MULTI-SECPEP	A375_MHC_IP_R1	1	490.7012939453125	2	490.26601	978.517468	-0.29017	-0.00014226	0.99124	0.00048597	0.70107	0.00034371	490.26642317544236	89.477	0.50837	89.477	89.171	89.679	0					16	9	2	0	0	0	0.95327	1	32876	32876		17.087	7.7391	1	1006400			19251	1083;2475	13842	13946	18857	18857					0.027349729028628644
HAYIISYL	8	Unmodified	_HAYIISYL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;ENSG00000103966|ENST00000220325|EHD4	ENSG00000024422|ENST00000263277|EHD2;ENSG00000103966|ENST00000220325|EHD4	ENSG00000024422|ENST00000263277|EHD2	MULTI-SECPEP	A375_MHC_IP_R2	2	490.66558837890625	2	490.26601	978.517468	-0.44794	-0.00021961	-0.058811	-2.8833E-05	-0.50675	-0.00024844	490.2659366834797	87.379	1.7695	88.111	87.662	89.432	0.73251					80	34	4	0	0	0	0.25325	1	33150	33150		63.394	0	1	25761000			19252	1083;2475	13842	13946	18858	18858					0.027349729028628644
HAYIISYL	8	Unmodified	_HAYIISYL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;ENSG00000103966|ENST00000220325|EHD4	ENSG00000024422|ENST00000263277|EHD2;ENSG00000103966|ENST00000220325|EHD4	ENSG00000024422|ENST00000263277|EHD2	MULTI-MATCH	A375_MHC_IP_R2	2		1	979.524744	978.517468	0.092785	9.0885E-05	-0.54796	-0.00053674	-0.45517	-0.00044585	979.5245042830783	87.412	0.55619	88.144	87.811	88.367	0.7318	-0.085264	-0.00026526	NaN	90.836	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2428300			19253	1083;2475	13842	13946							0.027349729028628644
HCCHCCPCCCC	11	Unmodified	_HCCHCCPCCCC_					0	0	0			REV__ENSG00000197191|ENST00000650725|CYSRT1	REV__ENSG00000197191|ENST00000650725|CYSRT1	MSMS	A375_MHC_IP_R1	1	607.7219848632812	2	607.634591	1213.25463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.47	1	100.47	99.969	100.97	0								0	0	0	0.1636	1	36928	36928		0	0	1		+		19254	22270	13843	13947	18859	18859					-0.3434690434191907
HCCLVRSSD	9	Unmodified	_HCCLVRSSD_					0	0	0			REV__nc|ENSG00000163947|Q9NR81-4|ARHGEF3	REV__nc|ENSG00000163947|Q9NR81-4|ARHGEF3	MSMS	A375_MHC_IP_R2	2	510.18841552734375	2	510.223494	1018.43243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.51	1	125.81	125.31	126.31	0.2951								0	0	0	0.1535	1	48965	48965		15.847	1.2655	1		+		19255	20430	13844	13948	18860	18860					-0.07604463896905145
HCECLHIQL	9	Unmodified	_HCECLHIQL_					0	0	0		ENST00000530675.5_3_11:102218091-102220814:+|nuORF	ENST00000530675.5_3_11:102218091-102220814:+|nuORF	ENST00000530675.5_3_11:102218091-102220814:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	548.6549682617188	2	548.257336	1094.50012	-0.32351	-0.00017737	-2.7019	-0.0014814	-3.0254	-0.0016587	548.2553351168656	70.211	0.66412	70.211	69.933	70.597	0					19	12	2	0	0	0	0.63811	1	25518	25518		12.532	2.4576	1	1811500			19256	13152	13845	13949	18861	18861					-0.04335013966101542
HCEFGGQTNVC	11	Unmodified	_HCEFGGQTNVC_					0	0	0			REV__ENSG00000178726|ENST00000377103|THBD	REV__ENSG00000178726|ENST00000377103|THBD	MULTI-SECPEP	A375_MHC_IP_R2	2	597.0889282226562	2	597.736965	1193.45938	-0.62943	-0.00037623	1.0816	0.00064651	0.45217	0.00027028	597.7378642120585	106.96	0.70995	107.72	107.34	108.05	0.75977					26	13	3	0	0	0	0.99227	1	40322	40322		9.3831	5.4387	1	3021400	+		19257	21515	13846	13950	18862	18862					-0.129614000763695
HCFYESLYYRL	11	Unmodified	_HCFYESLYYRL_					0	0	0			REV__ENST00000469038.1_1_3:49011147-49012531:+|nuORF	REV__ENST00000469038.1_1_3:49011147-49012531:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	747.7464599609375	2	747.347737	1492.68092	-0.71074	-0.00053117	-0.57873	-0.00043251	-1.2895	-0.00096368	747.3473050266704	66.403	0.51016	66.403	66.122	66.632	0					13	9	2	0	0	0	0.7342	1	24041	24041		4.897	3.5675	1	3211900	+		19258	25090	13847	13951	18863	18863					-0.045712171084005604
HCGCCQAW	8	Unmodified	_HCGCCQAW_					0	0	0		nc|ENSG00000164385|Q96MT4|LINC01600	nc|ENSG00000164385|Q96MT4|LINC01600	nc|ENSG00000164385|Q96MT4|LINC01600	MSMS	A375_MHC_IP_R2	2	454.132568359375	2	454.154025	906.293498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.14	1	32.877	32.377	33.377	0.73692								0	0	0	0.16876	1	11409	11409		2.8892	0.31174	1				19259	14728	13848	13952	18864	18864					-0.16339705066093302
HCGYFGYSL	9	Unmodified	_HCGYFGYSL_					0	0	0			REV__ENSG00000188257|ENST00000482011|PLA2G2A	REV__ENSG00000188257|ENST00000482011|PLA2G2A	MULTI-SECPEP	A375_MHC_IP_R1	1	523.862548828125	2	523.723652	1045.43275	-0.72356	-0.00037894	0.3017	0.00015801	-0.42186	-0.00022094	524.2250327708763	90.544	0.71167	90.544	90.285	90.997	0					17	13	2	0	0	0	0.75466	1	33276	33276		12.532	3.1841	1	2453100	+		19260	22079	13849	13953	18865	18865					-0.08814720905411377
HCHQSAAWY	9	Unmodified	_HCHQSAAWY_					0	0	0		nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1	nc|ENSG00000060718|P12107-4|COL11A1	nc|ENSG00000060718|P12107-4|COL11A1	MSMS	A375_MHC_IP_R1	1	367.793701171875	3	368.155626	1101.44505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.5982	1	3.5982	3.0982	4.0982	0								0	0	0	0.15486	1	821	821		0.26902	0.033176	1				19261	1314	13850	13954	18866	18866					-0.10161684442368824
HCHQSAAWY	9	Unmodified	_HCHQSAAWY_					0	0	0		nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1	nc|ENSG00000060718|P12107-4|COL11A1	nc|ENSG00000060718|P12107-4|COL11A1	MSMS	A375_MHC_IP_R2	2	367.79364013671875	3	368.155626	1101.44505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.099	1	17.695	17.195	18.195	0.59616								0	0	0	0.15486	1	5033	5033		0.26902	0.033176	1				19262	1314	13850	13954	18867	18867					-0.10161684442368824
HCPAQHALP	9	Unmodified	_HCPAQHALP_					0	0	0			REV__ENST00000308020.5_1_11:490919-491072:+|nuORF	REV__ENST00000308020.5_1_11:490919-491072:+|nuORF	MSMS	A375_MHC_IP_R2	2	487.1666259765625	2	487.237261	972.45997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.913	1	74.651	74.151	75.151	0.73752								0	0	0	0.15283	1	28055	28055		16.942	0	1		+		19263	23479	13851	13955	18868	18868					-0.027361925743775828
HCPGHPPWSSK	11	Unmodified	_HCPGHPPWSSK_					0	0	0		ENST00000500118.2_1_8:6262544-6263480:-|nuORF	ENST00000500118.2_1_8:6262544-6263480:-|nuORF	ENST00000500118.2_1_8:6262544-6263480:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	411.131591796875	3	411.52583	1231.55566	-0.14668	-6.0363E-05	0.12387	5.0974E-05	-0.022816	-9.3892E-06	411.526125711968	37.938	0.60986	37.938	37.658	38.268	0					12	11	2	0	0	0	0.99732	1	12716	12716		6.6235	3.9922	1	927960			19264	12774	13852	13956	18869	18869					-0.05085464454145949
HCQHCDMYFAD	11	Unmodified	_HCQHCDMYFAD_					0	0	0		ENSG00000095574|ENST00000368886|IKZF5	ENSG00000095574|ENST00000368886|IKZF5	ENSG00000095574|ENST00000368886|IKZF5	MSMS	A375_MHC_IP_R2	2	685.2401123046875	2	685.241557	1368.46856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.79	1	108.54	108.04	109.04	0.75436								0	0	0	0.16258	1	40715	40715		5.2969	1.7004	1				19265	2046	13853	13957	18870	18870					-0.200933747823683
HCQVHLLDD	9	Unmodified	_HCQVHLLDD_					0	0	0		nc|ENSG00000114541|Q9Y2L6-2|FRMD4B;ENSG00000114541|ENST00000398540|FRMD4B;ENST00000462308.1_1_3:69355851-69370051:-|nuORF;ENST00000470070.6_1_3:69247847-69370051:-|nuORF	nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	MULTI-MSMS	A375_MHC_IP_R2	2	540.6502685546875	2	540.250566	1078.48658	-1.0401	-0.00056192	0.71253	0.00038494	-0.32759	-0.00017698	540.2509644397132	39.114	0.66547	39.888	39.401	40.067	0.77451					18	12	2	0	0	0	0.64808	1	14443	14443		11.64	3.4848	1	3163600			19266	3228	13854	13958	18871	18871					-0.04952548473693241
HCRLLWRMQDY	11	Unmodified	_HCRLLWRMQDY_					0	0	0		ENST00000257836.3_1_11:32874897-32874975:+|nuORF	ENST00000257836.3_1_11:32874897-32874975:+|nuORF	ENST00000257836.3_1_11:32874897-32874975:+|nuORF	MSMS	A375_MHC_IP_R2	2	507.6556091308594	3	507.579829	1519.71766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.476	1	72.21	71.71	72.71	0.73421								0	0	0	0.16309	1	27115	27115		2.6312	1.1761	1				19267	10252	13855	13959	18872	18872					-0.021412437634808157
HCSAPCCA	8	Unmodified	_HCSAPCCA_					0	0	0			REV__ENSG00000188162|ENST00000399397|OTOG	REV__ENSG00000188162|ENST00000399397|OTOG	MSMS	A375_MHC_IP_R1	1	395.8247375488281	2	396.135301	790.25605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.6878	1	5.6878	5.1878	6.1878	0								0	0	0	0.16876	1	1298	1298		0.79363	0	1		+		19268	22075	13856	13960	18873	18873					-0.1474679633171263
HCSSRRPEGPD	11	Unmodified	_HCSSRRPEGPD_					0	0	0			REV__ENST00000465259.5_2_3:148802586-148804211:-|nuORF	REV__ENST00000465259.5_2_3:148802586-148804211:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	621.1766357421875	2	620.77801	1239.54147	-0.71988	-0.00044689	-1.0772	-0.00066872	-1.7971	-0.0011156	620.7773836560231	23.624	0.35546	23.624	23.483	23.838	0					8	6	2	0	0	0	0.53744	1	6554	6554		34.932	14.518	1	3324600	+		19269	25024	13857	13961	18874	18874					-0.06872161673072696
HCSSRRPEGPD	11	Unmodified	_HCSSRRPEGPD_					0	0	0			REV__ENST00000465259.5_2_3:148802586-148804211:-|nuORF	REV__ENST00000465259.5_2_3:148802586-148804211:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	620.77801	1239.54147	-1.0649	-0.00066104	-0.74997	-0.00046557	-1.8148	-0.0011266	620.7774674105873	22.967	0.30618	23.597	23.368	23.675	0.63014	-0.01334	0.00026802	NaN	34.932	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2434700	+		19270	25024	13857	13961							-0.06872161673072696
HCSWCWHTW	9	Unmodified	_HCSWCWHTW_					0	0	0		ENSG00000198471|ENST00000358241|RTP2;ENSG00000175077|ENST00000312295|RTP1	ENSG00000198471|ENST00000358241|RTP2	ENSG00000198471|ENST00000358241|RTP2	MSMS	A375_MHC_IP_R1	1	623.253662109375	2	623.239478	1244.4644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.03	1	107.03	106.53	107.53	0								0	0	0	0.15486	1	39278	39278		4.756	0.42677	1				19271	7931	13858	13962	18875	18875					-0.14805051423104487
HCYQDNQDL	9	Unmodified	_HCYQDNQDL_					0	0	0		nc|ENSG00000129116|Q8WX93|PALLD;nc|ENSG00000129116|Q8WX93-2|PALLD;ENSG00000129116|ENST00000505667|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD;nc|ENSG00000129116|Q8WX93-6|PALLD	nc|ENSG00000129116|Q8WX93|PALLD	nc|ENSG00000129116|Q8WX93|PALLD	MULTI-MSMS	A375_MHC_IP_R1	1	568.689208984375	2	568.227288	1134.44002	-0.17286	-9.8224E-05	-0.38766	-0.00022028	-0.56052	-0.0003185	568.727334739698	110.25	0.30492	110.25	110.14	110.44	0					6	5	2	0	0	0	0.64808	1	40472	40472		11.64	3.047	1	700870			19272	14593	13859	13963	18876	18876					-0.12182033095655243
HDAAISFGQY	10	Unmodified	_HDAAISFGQY_					0	0	0			REV__ENST00000373365.4_1_6:38654706-38670885:-|nuORF	REV__ENST00000373365.4_1_6:38654706-38670885:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	555.1559448242188	2	554.756538	1107.49852	-1.0749	-0.00059632	0.32373	0.00017959	-0.75119	-0.00041673	554.7565248484218	54.208	0.45754	54.959	54.66	55.118	0.75075					14	8	2	0	0	0	0.69306	1	20505	20505		13.906	0.86358	1	2442600	+		19273	24093	13860	13964	18877	18877					-0.05092608458835457
HDAGHQNV	8	Unmodified	_HDAGHQNV_					0	0	0			REV__ENST00000420610.1_1_Y:14088999-14090148:+|nuORF	REV__ENST00000420610.1_1_Y:14088999-14090148:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	439.5989990234375	2	439.19919	876.383828	-0.12748	-5.599E-05	0.10408	4.5712E-05	-0.023402	-1.0278E-05	439.19905639051143	73.425	0.60825	73.425	73.132	73.74	0					22	11	3	0	0	0	0.71451	1	26716	26716		30.225	0	1	4418400	+		19274	24571	13861	13965	18878	18878					-0.0593087315013463
HDCLTWSLSDD	11	Unmodified	_HDCLTWSLSDD_					0	0	0			REV__ZNF285|p.S189L|1|0.34|ENSG00000267508|chr19:44387679-44387679|G/A|missense_variant	REV__ZNF285|p.S189L|1|0.34|ENSG00000267508|chr19:44387679-44387679|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	431.5789489746094	3	431.180165	1290.51867	-0.15071	-6.4985E-05	0.15673	6.7577E-05	0.0060127	2.5926E-06	431.5133633592704	61.664	0.61274	61.664	61.382	61.994	0					36	11	4	0	0	0	0.73378	1	22237	22237		2.4348	0	1	7229000	+		19275	29034	13862	13966	18879	18879					-0.11497225581206294
HDCLTWSLSDD	11	Unmodified	_HDCLTWSLSDD_					0	0	0			REV__ZNF285|p.S189L|1|0.34|ENSG00000267508|chr19:44387679-44387679|G/A|missense_variant	REV__ZNF285|p.S189L|1|0.34|ENSG00000267508|chr19:44387679-44387679|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	431.91357421875	3	431.180165	1290.51867	-0.15071	-6.4985E-05	0.15673	6.7577E-05	0.0060127	2.5926E-06	431.5133633592704	61.664	0.61274	61.664	61.382	61.994	0					36	11	4	0	0	0	0.99681	1	22273	22273		7.0371	5.2948	1	7229000	+		19276	29034	13862	13966	18880	18880					-0.11497225581206294
HDCLTWSLSDD	11	Unmodified	_HDCLTWSLSDD_					0	0	0			REV__ZNF285|p.S189L|1|0.34|ENSG00000267508|chr19:44387679-44387679|G/A|missense_variant	REV__ZNF285|p.S189L|1|0.34|ENSG00000267508|chr19:44387679-44387679|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	431.5786437988281	3	431.180165	1290.51867	-0.53306	-0.00022984	-0.5846	-0.00025207	-1.1177	-0.00048191	431.17886100848045	60.941	0.7063	61.686	61.364	62.07	0.74503					43	13	4	0	0	0	0.73016	1	23052	23052		4.4062	0	1	10123000	+		19277	29034	13862	13966	18881	18881					-0.11497225581206294
HDDFETNWIV	10	Unmodified	_HDDFETNWIV_					0	0	0		BEST1|p.D302H|1|0.32|ENSG00000167995|chr11:61959534-61959534|G/C|missense_variant	BEST1|p.D302H|1|0.32|ENSG00000167995|chr11:61959534-61959534|G/C|missense_variant	BEST1|p.D302H|1|0.32|ENSG00000167995|chr11:61959534-61959534|G/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	426.1370849609375	3	425.859532	1274.55677	-0.53026	-0.00022581	0.67816	0.0002888	0.1479	6.2985E-05	425.85963726902435	38.259	0.20301	38.259	38.168	38.371	0					5	3	2	0	0	0	0.71361	1	13008	13008		3.3196	1.2357	1	1044100			19278	234	13863	13967	18882	18882					-0.06952971604255254
HDEEIMAGWTA	11	Unmodified	_HDEEIMAGWTA_					0	0	0		nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A	nc|ENSG00000174485|Q7Z401|DENND4A	nc|ENSG00000174485|Q7Z401|DENND4A	MULTI-MSMS	A375_MHC_IP_R2	2	630.6707153320312	2	630.271695	1258.52884	-0.70519	-0.00044446	-0.11407	-7.1894E-05	-0.81926	-0.00051636	630.2715995393022	43.095	0.45575	43.867	43.623	44.079	0.7724					18	8	3	0	0	0	0.67989	1	16052	16052		17.113	1.8644	1	4269500			19279	7887	13864	13968	18883	18883					-0.09008617855965895
HDETRDHVEVC	11	Unmodified	_HDETRDHVEVC_					0	0	0		ENST00000419278.2_1_2:37471065-37474467:+|nuORF;nc|ENSG00000003509|Q7L592-2|NDUFAF7;ENSG00000003509|ENST00000002125|NDUFAF7	ENST00000419278.2_1_2:37471065-37474467:+|nuORF	ENST00000419278.2_1_2:37471065-37474467:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	447.5946350097656	3	447.194697	1338.56226	-0.12737	-5.6959E-05	0.22026	9.8497E-05	0.092886	4.1538E-05	447.19478061511035	33.304	0.60848	33.304	33.09	33.698	0					33	11	4	0	0	0	0.7342	1	10825	10825		2.2527	2.2527	1	17958000			19280	860	13865	13969	18884	18884					-0.09347616084073707
HDETRDHVEVC	11	Unmodified	_HDETRDHVEVC_					0	0	0		ENST00000419278.2_1_2:37471065-37474467:+|nuORF;nc|ENSG00000003509|Q7L592-2|NDUFAF7;ENSG00000003509|ENST00000002125|NDUFAF7	ENST00000419278.2_1_2:37471065-37474467:+|nuORF	ENST00000419278.2_1_2:37471065-37474467:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	447.5946350097656	3	447.194697	1338.56226	-0.3927	-0.00017561	0.3516	0.00015723	-0.041104	-1.8381E-05	447.19485495780395	32.534	0.71112	33.271	32.96	33.671	0.73692					38	13	4	0	0	0	0.73672	1	11577	11577		1.0136	0.088041	1	15214000			19281	860	13865	13969	18885	18885					-0.09347616084073707
HDFLGDSW	8	Unmodified	_HDFLGDSW_					0	0	0		ENST00000460950.1_1_1:173446500-173450645:+|nuORF;ENSG00000117592|ENST00000340385|PRDX6	ENST00000460950.1_1_1:173446500-173450645:+|nuORF	ENST00000460950.1_1_1:173446500-173450645:+|nuORF	MSMS	A375_MHC_IP_R1	1	488.6976013183594	2	488.711599	975.408646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.15	1	84.15	83.65	84.65	0								0	0	0	0.16756	1	30815	30815		42.095	11.87	1				19282	3495	13866	13970	18886	18886					-0.08004238067417191
HDLEIILLS	9	Unmodified	_HDLEIILLS_					0	0	0		MCTP1|p.G373E|1|0.14|ENSG00000175471|chr5:94940139-94940139|C/T|missense_variant	MCTP1|p.G373E|1|0.14|ENSG00000175471|chr5:94940139-94940139|C/T|missense_variant	MCTP1|p.G373E|1|0.14|ENSG00000175471|chr5:94940139-94940139|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	351.60992431640625	3	351.53773	1051.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.091	1	46.091	45.591	46.591	0								0	0	0	0.15486	1	16155	16155		2.4985	0	1				19283	14362	13867	13971	18887	18887					0.06762896274540253
HDLLFLFTL	9	Unmodified	_HDLLFLFTL_					0	0	0			REV__ENSG00000186716|ENST00000305877|BCR	REV__ENSG00000186716|ENST00000305877|BCR	MULTI-SECPEP	A375_MHC_IP_R2	2	372.93255615234375	3	373.546337	1117.61718	-0.054059	-2.0194E-05	-0.40289	-0.0001505	-0.45695	-0.00017069	373.54612058726696	56.785	0.30563	57.535	57.356	57.662	0.75015					10	5	2	0	0	0	0.80005	1	21445	21445		1.0715	1.0715	1	1853200	+		19284	21984	13868	13972	18888	18888					0.06307790516802925
HDPISPVLS	9	Unmodified	_HDPISPVLS_					0	0	0		ENSG00000116199|ENST00000263733|FAM20B	ENSG00000116199|ENST00000263733|FAM20B	ENSG00000116199|ENST00000263733|FAM20B	MULTI-MSMS	A375_MHC_IP_R1	1	483.686767578125	2	482.758549	963.502546	-0.67258	-0.00032469	0.436	0.00021048	-0.23658	-0.00011421	482.7587032470969	67.424	0.91431	67.424	66.99	67.904	0					40	17	3	0	0	0	0.35581	1	24411	24411		26.884	0	1	11621000			19285	3383	13869	13973	18889	18889					0.019334810348709652
HDRMYWYRQD	10	Unmodified	_HDRMYWYRQD_					0	0	0		nc|ENSG00000211750|A0A075B6N3|TRBV24-1	nc|ENSG00000211750|A0A075B6N3|TRBV24-1	nc|ENSG00000211750|A0A075B6N3|TRBV24-1	MSMS	A375_MHC_IP_R2	2	490.44805908203125	3	490.550815	1468.63062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.261	1	24.905	24.405	25.405	0.64368								0	0	0	0.15637	1	7942	7942		0.15932	0.064481	1				19286	14877	13870	13974	18890	18890					-0.08495326713568829
HDSDDSDY	8	Unmodified	_HDSDDSDY_					0	0	0		nc|ENSG00000186566|Q9UKJ3-2|GPATCH8;ENSG00000186566|ENST00000591680|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	MSMS	A375_MHC_IP_R2	2	477.103271484375	2	477.159593	952.304634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.684	1	61.43	60.93	61.93	0.74503								0	0	0	0.16876	1	22981	22981		2.5775	0	1				19287	8759	13871	13975	18891	18891					-0.17342609685613297
HDSDSLEP	8	Unmodified	_HDSDSLEP_					0	0	0		ENSG00000111145|ENST00000228741|ELK3	ENSG00000111145|ENST00000228741|ELK3	ENSG00000111145|ENST00000228741|ELK3	MSMS	A375_MHC_IP_R1	1	450.17144775390625	2	450.190697	898.36684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.819	1	66.819	66.319	67.319	0								0	0	0	0.16876	1	24208	24208		9.3474	2.6243	1				19288	2968	13872	13976	18892	18892					-0.08640838546614305
HDSDSLEP	8	Unmodified	_HDSDSLEP_					0	0	0		ENSG00000111145|ENST00000228741|ELK3	ENSG00000111145|ENST00000228741|ELK3	ENSG00000111145|ENST00000228741|ELK3	MSMS	A375_MHC_IP_R1	1	450.1712341308594	2	450.190697	898.36684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.374	1	67.374	66.874	67.874	0								0	0	0	0.16876	1	24414	24414		9.3474	2.6243	1				19289	2968	13872	13976	18893	18893					-0.08640838546614305
HDSDSLEP	8	Unmodified	_HDSDSLEP_					0	0	0		ENSG00000111145|ENST00000228741|ELK3	ENSG00000111145|ENST00000228741|ELK3	ENSG00000111145|ENST00000228741|ELK3	MSMS	A375_MHC_IP_R2	2	450.1711730957031	2	450.190697	898.36684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.865	1	66.603	66.103	67.103	0.73811								0	0	0	0.16876	1	24975	24975		9.3474	3.587	1				19290	2968	13872	13976	18894	18894					-0.08640838546614305
HDSESPLLAQ	10	Unmodified	_HDSESPLLAQ_					0	0	0		NUAK1|p.R330Q|1|0.1|ENSG00000074590|chr12:106067799-106067799|C/T|missense_variant	NUAK1|p.R330Q|1|0.1|ENSG00000074590|chr12:106067799-106067799|C/T|missense_variant	NUAK1|p.R330Q|1|0.1|ENSG00000074590|chr12:106067799-106067799|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	549.1141357421875	2	548.767103	1095.51965	-0.73309	-0.0004023	0.5861	0.00032163	-0.14699	-8.0666E-05	548.7667901094535	39.922	0.40602	39.922	39.694	40.1	0					11	7	2	0	0	0	0.83355	1	13686	13686		22.736	4.6013	1	1640000			19291	15034	13873	13977	18895	18895					-0.024286431500058825
HDSPSLQYN	9	Unmodified	_HDSPSLQYN_					0	0	0			REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4	REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4	MSMS	A375_MHC_IP_R2	2	530.6370239257812	2	530.738345	1059.46214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.107	1	57.857	57.357	58.357	0.75015								0	0	0	0.15283	1	21591	21591		16.942	2.104	1		+		19292	22860	13874	13978	18896	18896					-0.06521485355574441
HDTHLAGV	8	Unmodified	_HDTHLAGV_					0	0	0		PCSK9|p.G227D|1|0.3|ENSG00000169174|chr1:55052672-55052672|G/A|missense_variant	PCSK9|p.G227D|1|0.3|ENSG00000169174|chr1:55052672-55052672|G/A|missense_variant	PCSK9|p.G227D|1|0.3|ENSG00000169174|chr1:55052672-55052672|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	425.1658935546875	2	425.214309	848.414065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.072	1	96.072	95.572	96.572	0								0	0	0	0.16876	1	35310	35310		6.3541	0	1				19293	15147	13875	13979	18897	18897					-0.016205144849436692
HDVEVLERNFQ	11	Unmodified	_HDVEVLERNFQ_					0	0	0		ENSG00000128203|ENST00000215906|ASPHD2	ENSG00000128203|ENST00000215906|ASPHD2	ENSG00000128203|ENST00000215906|ASPHD2	MULTI-MSMS	A375_MHC_IP_R2	2	462.96466064453125	3	462.565119	1384.67353	-0.79773	-0.000369	-0.4097	-0.00018951	-1.2074	-0.00055852	462.5650351574111	19.105	0.25153	19.708	19.633	19.884	0.60308					9	4	3	0	0	0	0.73557	1	5870	5870		3.5927	0.27303	1	3800800			19294	4123	13876	13980	18898	18898					-0.003422333844810055
HDVIKWVRY	9	Unmodified	_HDVIKWVRY_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000461733.5_1_3:183898306-183901401:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MULTI-SECPEP	A375_MHC_IP_R2	2	405.2548522949219	3	405.892619	1214.65603	-0.29656	-0.00012037	-0.015	-6.0882E-06	-0.31156	-0.00012646	405.8925280860507	61.281	0.65611	62.026	61.566	62.223	0.74504					15	12	2	0	0	0	0.78753	1	23053	23053		4.897	0	1	836320			19295	6467	13877	13981	18899	18899					0.05728515871169293
HDVLSFLTFQ	10	Unmodified	_HDVLSFLTFQ_					0	0	0		ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	MULTI-MSMS	A375_MHC_IP_R2	2	604.2091674804688	2	603.811313	1205.60807	-0.7369	-0.00044495	-2.2474	-0.001357	-2.9843	-0.0018019	603.8095760357353	24.226	0.30462	24.869	24.705	25.009	0.64368					11	5	3	0	0	0	0.69306	1	7964	7964		13.906	0	1	7714000			19296	1590	13878	13982	18900	18900					0.013493971604702892
HDWAGFSSL	9	Unmodified	_HDWAGFSSL_					0	0	0			REV__nc|ENSG00000119723|Q9Y2Z9-3|COQ6	REV__nc|ENSG00000119723|Q9Y2Z9-3|COQ6	MSMS	A375_MHC_IP_R2	2	510.1806640625	2	510.232699	1018.45084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.197	1	95.947	95.447	96.447	0.75045								0	0	0	0.15486	1	36166	36166		11.64	1.4569	1		+		19297	18092	13879	13983	18901	18901					-0.05764262659045016
HEAAEEFAKY	10	Unmodified	_HEAAEEFAKY_					0	0	0			REV__nc|ENSG00000118729|O14958-2|CASQ2	REV__nc|ENSG00000118729|O14958-2|CASQ2	MULTI-SECPEP	A375_MHC_IP_R1	1	399.63995361328125	3	398.852377	1193.5353	-0.065287	-2.604E-05	0.66413	0.00026489	0.59885	0.00023885	398.85260932508174	35.244	0.35624	35.244	35.116	35.472	0					8	6	2	0	0	0	0.9269	1	11776	11776		1.7423	0.78	1	950780	+		19298	27194	13880	13984	18902	18902					-0.05372356632960873
HEAEEEPDL	9	Unmodified	_HEAEEEPDL_					0	0	0			REV__ENSG00000125780|ENST00000381458|TGM3	REV__ENSG00000125780|ENST00000381458|TGM3	MULTI-SECPEP	A375_MHC_IP_R1	1	534.1544799804688	2	534.727643	1067.44073	-0.67942	-0.00036331	-0.94249	-0.00050397	-1.6219	-0.00086728	535.2289558777368	36.135	0.25218	36.135	35.932	36.184	0					5	4	2	0	0	0	0.78798	1	12042	12042		3.9444	0	1	477680	+		19299	18363	13881	13985	18903	18903					-0.09028915174940266
HEAEIETRI	9	Unmodified	_HEAEIETRI_					0	0	0		nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MSMS	A375_MHC_IP_R2	2	549.1983032226562	2	549.28292	1096.55129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.882	1	28.561	28.061	29.061	0.67857								0	0	0	0.13472	1	9579	9579		31.268	8.5321	1				19300	1717	13882	13986	18904	18904					0.006873496039588645
HEAEVLKQL	9	Unmodified	_HEAEVLKQL_					0	0	0		ENST00000485226.1_1_1:26227942-26230296:-|nuORF;ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF	ENST00000485226.1_1_1:26227942-26230296:-|nuORF	ENST00000485226.1_1_1:26227942-26230296:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	534.19775390625	2	533.798206	1065.58186	-0.49487	-0.00026416	-0.24649	-0.00013158	-0.74136	-0.00039574	533.7980660761598	35.753	2.0847	35.753	35.421	37.505	0					93	40	3	0	0	0	0.010673	1	11874	11874		165.72	76.766	1	164880000			19301	3503	13883	13987	18905	18905					0.05169127988983746
HEAEVLKQL	9	Unmodified	_HEAEVLKQL_					0	0	0		ENST00000485226.1_1_1:26227942-26230296:-|nuORF;ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF	ENST00000485226.1_1_1:26227942-26230296:-|nuORF	ENST00000485226.1_1_1:26227942-26230296:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	533.9701538085938	2	533.798206	1065.58186	-0.96657	-0.00051595	0.061563	3.2862E-05	-0.90501	-0.00048309	533.7982551077577	34.843	1.9774	35.606	35.273	37.25	0.76338					97	38	3	0	0	0	0.010947	1	12580	12580		152.89	88.925	1	132830000			19302	3503	13883	13987	18906	18906					0.05169127988983746
HEAMGLDKKY	10	Unmodified	_HEAMGLDKKY_					0	0	0		tr|U7T271|U7T271_FUSNUBMCcircularlypermuteddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00492PE=4SV=1	tr|U7T271|U7T271_FUSNUBMCcircularlypermuteddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00492PE=4SV=1	tr|U7T271|U7T271_FUSNUBMCcircularlypermuteddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00492PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	398.62744140625	3	397.865741	1190.57539	-0.33679	-0.000134	-1.9598	-0.00077975	-2.2966	-0.00091374	398.199495288998	23.944	0.50989	24.574	24.283	24.792	0.63014					14	9	2	0	0	0	0.92445	1	7651	7651		10.315	8.2313	1	2501700			19303	29920	13884	13988	18907	18907					-0.012271332340333174
HEAPYLFQKY	10	Unmodified	_HEAPYLFQKY_					0	0	0		nc|ENSG00000166532|Q9ULI2-2|RIMKLB;ENST00000408914.2_1_21:37422526-37423618:+|nuORF;ENSG00000166532|ENST00000535829|RIMKLB	nc|ENSG00000166532|Q9ULI2-2|RIMKLB	nc|ENSG00000166532|Q9ULI2-2|RIMKLB	MULTI-MSMS	A375_MHC_IP_R1	1	648.723876953125	2	648.324588	1294.63462	-0.3974	-0.00025764	-0.3123	-0.00020247	-0.7097	-0.00046012	648.32441714603	52.534	0.75996	52.534	52.237	52.997	0					31	14	3	0	0	0	3.1676E-05	1	18671	18671		193.29	141.88	1	8339200			19304	7086	13885	13989	18908	18908					-0.0009091394817914988
HEAPYLFQKY	10	Unmodified	_HEAPYLFQKY_					0	0	0		nc|ENSG00000166532|Q9ULI2-2|RIMKLB;ENST00000408914.2_1_21:37422526-37423618:+|nuORF;ENSG00000166532|ENST00000535829|RIMKLB	nc|ENSG00000166532|Q9ULI2-2|RIMKLB	nc|ENSG00000166532|Q9ULI2-2|RIMKLB	MULTI-SECPEP	A375_MHC_IP_R2	2	648.723388671875	2	648.324588	1294.63462	-0.95947	-0.00062205	0.11079	7.183E-05	-0.84867	-0.00055022	648.3245943253577	51.814	0.66283	52.566	52.219	52.882	0.75225					28	12	3	0	0	0	0.022852	1	19468	19468		173.69	136.61	1	6978000			19305	7086	13885	13989	18909	18909					-0.0009091394817914988
HEAVTIKCTF	10	Unmodified	_HEAVTIKCTF_					0	0	0		ENST00000565499.1_1_16:21658349-21663919:-|nuORF;ENSG00000140749|ENST00000268389|IGSF6	ENST00000565499.1_1_16:21658349-21663919:-|nuORF	ENST00000565499.1_1_16:21658349-21663919:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	383.9189758300781	3	383.53047	1147.56958	-0.28151	-0.00010797	3.9585	0.0015182	3.677	0.0014102	383.53045332173843	41.349	0.25241	42.124	42.047	42.3	0.77451					5	4	2	0	0	0	0.90853	1	15335	15335		13.615	5.4593	1	523680			19306	5183	13886	13990	18910	18910					0.0016976825427263975
HECNGRQAEG	10	Unmodified	_HECNGRQAEG_					0	0	0			REV__ENST00000529239.1_1_8:61851661-61851937:-|nuORF	REV__ENST00000529239.1_1_8:61851661-61851937:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	366.9255676269531	3	367.489445	1099.4465	0.098965	3.6368E-05	0.65503	0.00024072	0.75399	0.00027708	367.48968511019336	27.077	0.35332	27.077	26.978	27.331	0					8	6	2	0	0	0	0.94163	1	8258	8258		6.1918	6.1918	1	1104000	+		19307	25817	13887	13991	18911	18911					-0.09924095144265266
HEDCVRGL	8	Unmodified	_HEDCVRGL_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-SECPEP	A375_MHC_IP_R2	2	464.6258850097656	2	464.718901	927.42325	-0.91527	-0.00042534	0.57686	0.00026808	-0.33841	-0.00015727	464.71919297539677	60.829	0.4549	61.574	61.314	61.769	0.74503					12	8	2	0	0	0	0.972	1	23013	23013		4.756	0	1	1097100			19308	4853	13888	13992	18912	18912					-0.0433648919092775
HEDCVRGL	8	Unmodified	_HEDCVRGL_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MATCH	A375_MHC_IP_R1	1		2	464.718901	927.42325	-0.23391	-0.0001087	0.56056	0.0002605	0.32665	0.0001518	464.71914661635225	61.611	0.5095	61.611	61.382	61.891	0	0.018454	-8.2674E-06	NaN	4.756	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1926200			19309	4853	13888	13992							-0.0433648919092775
HEDIPDATTL	10	Unmodified	_HEDIPDATTL_					0	0	0			REV__nc|ENSG00000068796|O00139-2|KIF2A	REV__nc|ENSG00000068796|O00139-2|KIF2A	MULTI-SECPEP	A375_MHC_IP_R2	2	370.6082763671875	3	371.180383	1110.51932	-0.16593	-6.159E-05	1.5365	0.00057032	1.3706	0.00050873	371.1808735962153	28.598	0.35362	29.297	29.08	29.434	0.69872					10	6	2	0	0	0	0.91556	1	9912	9912		5.7834	1.5939	1	12458000	+		19310	16546	13889	13993	18913	18913					-0.03152062869844485
HEDRHIKFY	9	Unmodified	_HEDRHIKFY_					0	0	0		nc|ENSG00000115808|O43815-2|STRN;ENSG00000115808|ENST00000263918|STRN	nc|ENSG00000115808|O43815-2|STRN	nc|ENSG00000115808|O43815-2|STRN	MULTI-SECPEP	A375_MHC_IP_R2	2	415.9438171386719	3	415.543878	1243.60981	-0.34834	-0.00014475	-0.36324	-0.00015094	-0.71158	-0.00029569	415.5436677438145	23.134	0.30612	23.764	23.572	23.878	0.63014					12	5	3	0	0	0	0.67539	1	7427	7427		26.021	19.397	1	3664700			19311	3340	13890	13994	18914	18914					-0.002255490309153174
HEDRQMNTNW	10	Unmodified	_HEDRQMNTNW_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2;ZMIZ1|p.P625L|1|0.26|ENSG00000108175|chr10:79300797-79300797|C/T|missense_variant;ENST00000478045.5_1_7:44801192-44807219:+|nuORF;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1	nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MSMS	A375_MHC_IP_R2	2	665.7949829101562	2	665.783293	1329.55203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.945	1	92.684	92.184	93.184	0.73902								0	0	0	0.15531	1	34968	34968		3.5965	0	1				19312	3788;2786	13891	13995	18915	18915					-0.09956179018627154
HEDSSSDPPT	10	Unmodified	_HEDSSSDPPT_					0	0	0		chr3:47714490-47718022|111|23.59|0.61|5.27|-|0|TE_info:AluJr,AluJr_dup14161,Alu,SINE,donor,+,47718022,47718162|SMARCC1,None|1	chr3:47714490-47718022|111|23.59|0.61|5.27|-|0|TE_info:AluJr,AluJr_dup14161,Alu,SINE,donor,+,47718022,47718162|SMARCC1,None|1	chr3:47714490-47718022|111|23.59|0.61|5.27|-|0|TE_info:AluJr,AluJr_dup14161,Alu,SINE,donor,+,47718022,47718162|SMARCC1,None|1	MULTI-SECPEP	A375_MHC_IP_R1	1	536.6146850585938	2	536.2149	1070.41525	-0.38588	-0.00020692	-0.39394	-0.00021124	-0.77983	-0.00041815	536.2147265900255	45.392	0.45332	45.392	45.132	45.585	0					16	8	3	0	0	0	0.93799	1	15922	15922		3.5965	3.5965	1	1951200			19313	474	13892	13996	18916	18916					-0.11714389697385741
HEEFKKKKND	10	Unmodified	_HEEFKKKKND_					0	0	0		nc|ENSG00000152939|Q8N4S9-3|MARVELD2;ENSG00000152939|ENST00000325631|MARVELD2	nc|ENSG00000152939|Q8N4S9-3|MARVELD2	nc|ENSG00000152939|Q8N4S9-3|MARVELD2	MULTI-SECPEP	A375_MHC_IP_R1	1	434.14208984375	3	434.89821	1301.6728	0.010798	4.6961E-06	3.2604	0.0014179	3.2712	0.0014226	435.2338486365837	43.257	0.35805	43.257	42.993	43.351	0					9	6	2	0	0	0	0.94269	1	14994	14994		3.3196	2.8651	1	824240			19314	5990	13893	13997	18917	18917					0.034029719664886215
HEEFLREL	8	Unmodified	_HEEFLREL_					0	0	0		CELSR1|p.P2274L|1|0.14|ENSG00000075275|chr22:46384605-46384605|G/A|missense_variant	CELSR1|p.P2274L|1|0.14|ENSG00000075275|chr22:46384605-46384605|G/A|missense_variant	CELSR1|p.P2274L|1|0.14|ENSG00000075275|chr22:46384605-46384605|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	358.96917724609375	3	358.185579	1071.53491	0.22984	8.2324E-05	-0.52034	-0.00018638	-0.2905	-0.00010405	358.18534754934194	42.585	0.96226	42.585	42.132	43.095	0					33	18	2	0	0	0	0.972	1	14612	14612		5.7319	0	1	2166600			19315	358	13894	13998	18918	18918					0.00200268437856721
HEEGEEEDE	9	Unmodified	_HEEGEEEDE_					0	0	0		KAT6B|p.E1411G|1|0.15|ENSG00000156650|chr10:75029056-75029056|A/G|missense_variant	KAT6B|p.E1411G|1|0.15|ENSG00000156650|chr10:75029056-75029056|A/G|missense_variant	KAT6B|p.E1411G|1|0.15|ENSG00000156650|chr10:75029056-75029056|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	552.6973876953125	2	551.693997	1101.37344	-1.1252	-0.00062077	2.9898	0.0016495	1.8646	0.0010287	552.1972286210756	59.963	0.55812	60.711	60.501	61.059	0.74714					27	10	4	0	0	0	0.72507	1	22745	22745		4.756	0.81161	1	2459200			19316	14189	13895	13999	18919	18919					-0.1731899017656815
HEENSRDNP	9	Unmodified	_HEENSRDNP_					0	0	0		SCG2|p.Y170H|1|0.39|ENSG00000171951|chr2:223598775-223598775|A/G|missense_variant	SCG2|p.Y170H|1|0.39|ENSG00000171951|chr2:223598775-223598775|A/G|missense_variant	SCG2|p.Y170H|1|0.39|ENSG00000171951|chr2:223598775-223598775|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	548.6815795898438	2	549.233958	1096.45336	-0.3192	-0.00017532	-2.737	-0.0015032	-3.0562	-0.0016786	549.2321242048337	35.672	0.2562	35.672	35.522	35.778	0					6	4	2	0	0	0	0.74412	1	11890	11890		6.2058	0.47393	1	694840			19317	29111	13896	14000	18920	18920					-0.09100458992043059
HEFDSRWKSF	10	Unmodified	_HEFDSRWKSF_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4;nc|ENSG00000068878|Q14997-3|PSME4;ENST00000461810.1_1_2:54135441-54135975:-|nuORF	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-SECPEP	A375_MHC_IP_R2	2	447.29730224609375	3	446.879038	1337.61528	-0.29973	-0.00013394	0.24698	0.00011037	-0.052748	-2.3572E-05	446.87911378107117	41.983	0.35748	42.758	42.607	42.964	0.77451					12	6	2	0	0	0	0.94216	1	15601	15601		4.1166	0.27072	1	1932000			19318	1468	13897	14001	18921	18921					-0.040018702391080296
HEFEYIFRLF	10	Unmodified	_HEFEYIFRLF_					0	0	0			REV__nc|ENSG00000068971|Q15173-2|PPP2R5B	REV__nc|ENSG00000068971|Q15173-2|PPP2R5B	MULTI-MSMS	A375_MHC_IP_R2	2	467.6658020019531	3	467.571434	1399.69247	-0.84378	-0.00039453	-0.35052	-0.00016389	-1.1943	-0.00055842	467.5712385886515	34.923	0.40373	35.686	35.525	35.929	0.76338					16	7	3	0	0	0	0.71361	1	12629	12629		3.3196	1.2357	1	3641100	+		19319	16550	13898	14002	18922	18922					0.008613479772293431
HEFLVKPSF	9	Unmodified	_HEFLVKPSF_					0	0	0		ENSG00000095002|ENST00000233146|MSH2;nc|ENSG00000095002|P43246-2|MSH2;MSH2|p.P476S|1|0.08|ENSG00000095002|chr2:47463070-47463070|C/T|missense_variant	ENSG00000095002|ENST00000233146|MSH2	ENSG00000095002|ENST00000233146|MSH2	MULTI-MSMS	A375_MHC_IP_R1	1	552.6978149414062	2	552.297842	1102.58113	-0.58079	-0.00032077	0.8354	0.00046139	0.25461	0.00014062	552.2982933501169	60.975	0.4569	60.975	60.77	61.227	0					16	8	2	0	0	0	0.073267	1	21960	21960		67.081	34.295	1	2859700			19320	2032	13899	14003	18923	18923					0.033943333399292897
HEFLVKPSF	9	Unmodified	_HEFLVKPSF_					0	0	0		ENSG00000095002|ENST00000233146|MSH2;nc|ENSG00000095002|P43246-2|MSH2;MSH2|p.P476S|1|0.08|ENSG00000095002|chr2:47463070-47463070|C/T|missense_variant	ENSG00000095002|ENST00000233146|MSH2	ENSG00000095002|ENST00000233146|MSH2	MULTI-SECPEP	A375_MHC_IP_R2	2	552.5968627929688	2	552.297842	1102.58113	-1.1171	-0.00061696	0.75	0.00041422	-0.36707	-0.00020273	552.298237902473	60.047	0.81086	60.794	60.249	61.059	0.74714					21	15	2	0	0	0	0.26374	1	22731	22731		55.235	19.108	1	3162000			19321	2032	13899	14003	18924	18924					0.033943333399292897
HEGPGSLL	8	Unmodified	_HEGPGSLL_					0	0	0		ENSG00000119912|ENST00000265986|IDE;ENST00000478361.6_1_10:94240585-94297282:-|nuORF	ENSG00000119912|ENST00000265986|IDE	ENSG00000119912|ENST00000265986|IDE	MULTI-SECPEP	A375_MHC_IP_R1	1	405.6112365722656	2	405.211235	808.407917	-0.64394	-0.00026093	-0.26792	-0.00010856	-0.91186	-0.0003695	405.21151143491085	41.201	0.60786	41.201	40.963	41.571	0					21	11	3	0	0	0	0.84748	1	14199	14199		21.747	0	1	4766600			19322	3633	13900	14004	18925	18925					-0.003950327164830014
HEGSFKSHK	9	Unmodified	_HEGSFKSHK_					0	0	0		ENSG00000099991|ENST00000263119|CABIN1;nc|ENSG00000099991|Q9Y6J0-2|CABIN1	ENSG00000099991|ENST00000263119|CABIN1	ENSG00000099991|ENST00000263119|CABIN1	MSMS	A375_MHC_IP_R2	2	352.92059326171875	3	352.845557	1055.51484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.548	1	23.178	22.678	23.678	0.63014								0	0	0	0.15142	1	7169	7169		13.615	6.8917	1				19323	2097	13901	14005	18926	18926					-0.010694825021118959
HEGSIPVLY	9	Unmodified	_HEGSIPVLY_					0	0	0			REV__tr|U7T2F7|U7T2F7_FUSNUGTPaseDerOS=FusobacteriumnucleatumCTI-5OX=1316586GN=derPE=3SV=1	REV__tr|U7T2F7|U7T2F7_FUSNUGTPaseDerOS=FusobacteriumnucleatumCTI-5OX=1316586GN=derPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	508.1661376953125	2	507.766374	1013.5182	-0.44722	-0.00022708	-0.32084	-0.00016291	-0.76806	-0.00038999	507.7661853257105	59.003	0.50879	59.003	58.736	59.245	0					17	9	2	0	0	0	0.52144	1	21197	21197		16.942	0	1	3369400	+		19324	28739	13902	14006	18927	18927					0.011977675518892283
HEGVLNIDDY	10	Unmodified	_HEGVLNIDDY_					0	0	0		nc|ENSG00000152822|Q13255-2|GRM1;nc|ENSG00000152822|Q13255-3|GRM1;ENSG00000152822|ENST00000282753|GRM1	nc|ENSG00000152822|Q13255-2|GRM1	nc|ENSG00000152822|Q13255-2|GRM1	MULTI-SECPEP	A375_MHC_IP_R1	1	392.92431640625	3	392.184016	1173.53022	-0.33408	-0.00013102	0.01852	7.2631E-06	-0.31556	-0.00012376	392.1841655168595	29.255	0.40593	29.255	29.047	29.453	0					10	7	2	0	0	0	0.88918	1	9221	9221		7.9454	0	1	2680100			19325	5987	13903	14007	18928	18928					-0.04960660495589764
HEHLESELF	9	Unmodified	_HEHLESELF_					0	0	0			REV__nc|ENSG00000118007|Q8WVM7-2|STAG1	REV__nc|ENSG00000118007|Q8WVM7-2|STAG1	MULTI-MSMS	A375_MHC_IP_R2	2	381.248779296875	3	380.848856	1139.52474	-0.47895	-0.00018241	0.47443	0.00018068	-0.0045214	-1.722E-06	380.8489829144238	28.459	0.50646	29.138	28.757	29.263	0.67857					21	9	3	0	0	0	0.55818	1	9840	9840		11.495	3.3392	1	14681000	+		19326	17194	13904	14008	18929	18929					-0.03944339287386356
HEHPDLIVGF	10	Unmodified	_HEHPDLIVGF_					0	0	0		nc|ENSG00000127511|O75182|SIN3B;ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182-3|SIN3B	nc|ENSG00000127511|O75182|SIN3B	nc|ENSG00000127511|O75182|SIN3B	MULTI-SECPEP	A375_MHC_IP_R1	1	581.67041015625	2	582.29583	1162.57711	-0.053297	-3.1035E-05	-0.35832	-0.00020865	-0.41161	-0.00023968	582.2956044936282	72.296	0.60702	72.296	71.968	72.575	0					25	11	3	0	0	0	0.86849	1	26283	26283		13.906	8.1742	1	1505000			19327	4094	13905	14009	18930	18930					0.002322438462442733
HEHPDLIVGF	10	Unmodified	_HEHPDLIVGF_					0	0	0		nc|ENSG00000127511|O75182|SIN3B;ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182-3|SIN3B	nc|ENSG00000127511|O75182|SIN3B	nc|ENSG00000127511|O75182|SIN3B	MULTI-MSMS	A375_MHC_IP_R2	2	582.6952514648438	2	582.29583	1162.57711	-0.63619	-0.00037045	0.4018	0.00023396	-0.23439	-0.00013649	582.2957834578568	71.435	0.45499	72.169	71.959	72.414	0.73421					13	8	2	0	0	0	0.36703	1	27145	27145		36.127	20.879	1	1487600			19328	4094	13905	14009	18931	18931					0.002322438462442733
HEHSFLPSSY	10	Unmodified	_HEHSFLPSSY_					0	0	0		nc|ENSG00000019991|P14210-6|HGF;nc|ENSG00000019991|P14210-2|HGF;nc|ENSG00000019991|P14210-4|HGF;ENSG00000019991|ENST00000222390|HGF	nc|ENSG00000019991|P14210-6|HGF	nc|ENSG00000019991|P14210-6|HGF	MULTI-SECPEP	A375_MHC_IP_R1	1	602.123291015625	2	602.275095	1202.53564	-0.24726	-0.00014892	-0.164	-9.8774E-05	-0.41126	-0.00024769	602.2751451799363	62.498	0.35969	62.498	62.249	62.609	0					8	6	2	0	0	0	0.9269	1	22499	22499		10.824	0.75	1	870380			19329	1054	13906	14010	18932	18932					-0.057529369130861596
HEHWRFVVQ	9	Unmodified	_HEHWRFVVQ_					0	0	0		TSN|p.L95V|1|0.19|ENSG00000211460|chr2:121761434-121761434|T/G|missense_variant	TSN|p.L95V|1|0.19|ENSG00000211460|chr2:121761434-121761434|T/G|missense_variant	TSN|p.L95V|1|0.19|ENSG00000211460|chr2:121761434-121761434|T/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	413.9308776855469	3	413.212351	1236.61522	0.012782	5.2815E-06	2.7752	0.0011468	2.788	0.001152	413.21312981418833	27.263	0.30579	27.942	27.69	27.996	0.67857					10	5	3	0	0	0	0.64808	1	9299	9299		7.609	0	1	943510			19330	30085	13907	14011	18933	18933					0.006381745515682269
HEIAFPGKHF	10	Unmodified	_HEIAFPGKHF_					0	0	0		ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	395.13470458984375	3	394.873336	1181.59818	-0.29684	-0.00011721	0.4079	0.00016107	0.11106	4.3856E-05	394.87346634739623	36.633	0.70672	36.633	36.339	37.045	0					28	13	3	0	0	0	0.25271	1	12328	12328		37.075	24.834	1	5645800			19331	5610	13908	14012	18934	18934					0.014642539457554449
HEIAFPGKHF	10	Unmodified	_HEIAFPGKHF_					0	0	0		ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	395.134765625	3	394.873336	1181.59818	-0.32532	-0.00012846	1.1032	0.00043562	0.77787	0.00030716	394.87350304797394	35.787	0.76294	36.551	36.183	36.946	0.76338					35	14	4	0	0	0	0.12314	1	12991	12991		49.527	37.287	1	5287100			19332	5610	13908	14012	18935	18935					0.014642539457554449
HEIAPGIIRKY	11	Unmodified	_HEIAPGIIRKY_					0	0	0		ENSG00000115526|ENST00000264249|CHST10	ENSG00000115526|ENST00000264249|CHST10	ENSG00000115526|ENST00000264249|CHST10	MULTI-MSMS	A375_MHC_IP_R1	1	433.653076171875	3	432.918945	1295.73501	0.035149	1.5217E-05	-0.25073	-0.00010855	-0.21558	-9.3329E-05	432.91880621317006	35.641	0.71465	35.641	35.167	35.881	0					30	13	3	0	0	0	0.1307	2	11892	11892;11922		64.692	55.715	1	4184200			19333	3318	13909	14013	18936;18937	18936					0.09896743105491623
HEIAPGIIRKY	11	Unmodified	_HEIAPGIIRKY_					0	0	0		ENSG00000115526|ENST00000264249|CHST10	ENSG00000115526|ENST00000264249|CHST10	ENSG00000115526|ENST00000264249|CHST10	MULTI-MSMS	A375_MHC_IP_R2	2	433.3187255859375	3	432.918945	1295.73501	-0.43968	-0.00019035	-0.15252	-6.603E-05	-0.5922	-0.00025638	432.91891002117654	34.647	0.50544	35.41	35.273	35.778	0.76338					19	9	3	0	0	0	0.11968	1	12551	12551		66.55	61.147	1	3542600			19334	3318	13909	14013	18938	18938					0.09896743105491623
HEIAVNENF	9	Unmodified	_HEIAVNENF_					0	0	0		ENSG00000166046|ENST00000299045|TCP11L2;nc|ENSG00000166046|Q8N4U5-2|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	MULTI-MSMS	A375_MHC_IP_R1	1	537.6849975585938	2	536.756538	1071.49852	-0.65697	-0.00035263	-0.53641	-0.00028792	-1.1934	-0.00064055	536.7560446275039	46.122	1.5161	46.122	45.334	46.85	0					44	20	3	0	0	0	0.19747	1	16117	16117		38.176	15.439	1	18936000			19335	7020	13910	14014	18939	18939					-0.03436608458855517
HEIAVNENF	9	Unmodified	_HEIAVNENF_					0	0	0		ENSG00000166046|ENST00000299045|TCP11L2;nc|ENSG00000166046|Q8N4U5-2|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	MULTI-MSMS	A375_MHC_IP_R2	2	537.6840209960938	2	536.756538	1071.49852	-0.92986	-0.00049911	-0.077717	-4.1715E-05	-1.0076	-0.00054082	536.7563404982989	45.368	1.1112	46.133	45.694	46.805	0.76518					51	17	4	0	0	0	0.44024	1	16852	16852		22.736	14.826	1	20792000			19336	7020	13910	14014	18940	18940					-0.03436608458855517
HEIDGKALF	9	Unmodified	_HEIDGKALF_					0	0	0		nc|ENSG00000102098|Q9UQR0-2|SCML2;ENSG00000102098|ENST00000251900|SCML2	nc|ENSG00000102098|Q9UQR0-2|SCML2	nc|ENSG00000102098|Q9UQR0-2|SCML2	MULTI-MSMS	A375_MHC_IP_R1	1	515.6715698242188	2	515.271824	1028.5291	0.017491	9.0128E-06	-0.46256	-0.00023834	-0.44506	-0.00022933	515.2714400480075	45.005	0.50721	45.005	44.727	45.234	0					19	9	3	0	0	0	0.027818	2	15719	15692;15719		76.825	14.252	1	3772800			19337	2357	13911	14015	18941;18942	18942					0.015971699261854155
HEIDGKALF	9	Unmodified	_HEIDGKALF_					0	0	0		nc|ENSG00000102098|Q9UQR0-2|SCML2;ENSG00000102098|ENST00000251900|SCML2	nc|ENSG00000102098|Q9UQR0-2|SCML2	nc|ENSG00000102098|Q9UQR0-2|SCML2	MULTI-SECPEP	A375_MHC_IP_R2	2	515.6712646484375	2	515.271824	1028.5291	-0.61671	-0.00031777	-0.46689	-0.00024058	-1.0836	-0.00055835	515.271499494287	44.096	0.50673	44.865	44.631	45.138	0.7691					22	9	3	0	0	0	0.053555	1	16438	16438		90.135	11.407	1	3764000			19338	2357	13911	14015	18943	18943					0.015971699261854155
HEIDKRGHY	9	Unmodified	_HEIDKRGHY_					0	0	0			REV__nc|ENSG00000049192|Q9UKP5-2|ADAMTS6	REV__nc|ENSG00000049192|Q9UKP5-2|ADAMTS6	MULTI-SECPEP	A375_MHC_IP_R1	1	385.158203125	3	385.528228	1153.56285	-0.037462	-1.4443E-05	1.2933	0.00049861	1.2559	0.00048417	385.86366766492864	23.501	0.30592	23.501	23.381	23.687	0					9	5	2	0	0	0	0.80101	1	6438	6438		5.2969	3.0141	1	1479400	+		19339	27102	13912	14016	18944	18944					-0.007784085820503606
HEIEALKSF	9	Unmodified	_HEIEALKSF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	A375_MHC_IP_R1	1	537.684814453125	2	537.284931	1072.55531	-0.44006	-0.00023644	0.14133	7.5937E-05	-0.29873	-0.0001605	537.2849249822399	45.508	1.2118	45.508	45.183	46.395	0					60	23	5	0	0	0	0.0042961	1	15883	15883		136.39	77.713	1	42316000			19340	1676	13913	14017	18945	18945					0.021934390976412033
HEIEALKSF	9	Unmodified	_HEIEALKSF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	A375_MHC_IP_R2	2	537.6842651367188	2	537.284931	1072.55531	-0.96271	-0.00051725	0.12408	6.6664E-05	-0.83864	-0.00045059	537.2849634541992	44.595	1.17	45.364	45.086	46.256	0.7691					62	22	4	0	0	0	0.0015806	1	16611	16611		148.27	73.339	1	36326000			19341	1676	13913	14017	18946	18946					0.021934390976412033
HEIESAGQTW	10	Unmodified	_HEIESAGQTW_					0	0	0		nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1	nc|ENSG00000134283|Q8NEY8-3|PPHLN1	nc|ENSG00000134283|Q8NEY8-3|PPHLN1	MULTI-MSMS	A375_MHC_IP_R2	2	579.6644287109375	2	579.264727	1156.5149	-0.74952	-0.00043417	0.19535	0.00011316	-0.55417	-0.00032101	579.2648197164889	36.728	0.91293	37.499	37.207	38.12	0.7709					41	17	4	0	0	0	0.011212	1	13383	13383		125.53	85.579	1	14207000			19342	14609	13914	14018	18947	18947					-0.05709527292765415
HEIETTTKSW	10	Unmodified	_HEIETTTKSW_					0	0	0		ENSG00000115604|ENST00000233957|IL18R1	ENSG00000115604|ENST00000233957|IL18R1	ENSG00000115604|ENST00000233957|IL18R1	MULTI-MSMS	A375_MHC_IP_R2	2	616.7002563476562	2	616.30131	1230.58807	-1.0678	-0.00065812	-0.116	-7.1491E-05	-1.1838	-0.00072961	616.3010146457166	25.976	0.40742	26.636	26.5	26.907	0.65992					12	7	3	0	0	0	0.0075204	1	8768	8768		105.35	79.077	1	2896300			19343	3326	13915	14019	18948	18948					-0.018003985701852798
HEIETTTKSW	10	Unmodified	_HEIETTTKSW_					0	0	0		ENSG00000115604|ENST00000233957|IL18R1	ENSG00000115604|ENST00000233957|IL18R1	ENSG00000115604|ENST00000233957|IL18R1	MULTI-MATCH	A375_MHC_IP_R1	1		2	616.30131	1230.58807	-0.64385	-0.00039681	0.27305	0.00016828	-0.3708	-0.00022852	616.3018875577892	26.587	0.65417	26.587	26.423	27.078	0	-0.024467	0.00037841	NaN	105.35	13	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2477100			19344	3326	13915	14019							-0.018003985701852798
HEIEVYRKT	9	Unmodified	_HEIEVYRKT_					0	0	0		ENSG00000117480|ENST00000243167|FAAH	ENSG00000117480|ENST00000243167|FAAH	ENSG00000117480|ENST00000243167|FAAH	MULTI-SECPEP	A375_MHC_IP_R1	1	392.92431640625	3	392.212017	1173.61422	-0.32494	-0.00012745	-1.1631	-0.0004562	-1.4881	-0.00058364	392.2121300606479	29.478	0.20141	29.478	29.302	29.504	0					5	3	2	0	0	0	0.71541	1	9221	9221		7.609	0.50723	1	4240300			19345	3487	13916	14020	18949	18949					0.03435915391992239
HEIITLEQY	9	Unmodified	_HEIITLEQY_					0	0	0		nc|ENSG00000083642|Q9NTI5-2|PDS5B;ENSG00000083642|ENST00000315596|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-SECPEP	A375_MHC_IP_R1	1	573.6957397460938	2	573.295496	1144.57644	-0.55679	-0.00031921	0.324	0.00018575	-0.23279	-0.00013346	573.295779130255	68.209	1.1652	68.209	67.754	68.92	0					34	22	2	0	0	0	0.048303	1	24701	24701		103.75	61.654	1	4546900			19346	1783	13917	14021	18950	18950					0.00993404406517584
HEIITLEQY	9	Unmodified	_HEIITLEQY_					0	0	0		nc|ENSG00000083642|Q9NTI5-2|PDS5B;ENSG00000083642|ENST00000315596|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-MSMS	A375_MHC_IP_R2	2	573.6952514648438	2	573.295496	1144.57644	-0.22934	-0.00013148	-0.4305	-0.0002468	-0.65984	-0.00037828	573.2952284247853	67.473	0.76102	68.21	67.801	68.562	0.73631					29	14	3	0	0	0	0.026268	1	25537	25537		78.149	47.513	1	6774500			19347	1783	13917	14021	18951	18951					0.00993404406517584
HEIITPEQF	9	Unmodified	_HEIITPEQF_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	A375_MHC_IP_R1	1	557.6817016601562	2	557.282389	1112.55022	-0.53553	-0.00029844	-2.3629	-0.0013168	-2.8984	-0.0016152	557.2822552787158	63.888	1.3737	63.888	63.377	64.75	0					64	26	4	0	0	0	0.0054362	2	23062	23062;23309		134.3	76.574	1	10797000			19348	3744	13918	14022	18952;18953	18952					-0.001548647649542545
HEIITPEQF	9	Unmodified	_HEIITPEQF_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	A375_MHC_IP_R2	2	557.6822509765625	2	557.282389	1112.55022	-0.71162	-0.00039657	-2.0124	-0.0011215	-2.7241	-0.0015181	557.2823736766712	63.084	1.1666	63.826	63.484	64.651	0.74263					59	22	4	0	0	0	0.0099105	2	23882	23882;24048		118.89	68.962	1	12828000			19349	3744	13918	14022	18954;18955	18954					-0.001548647649542545
HEIKTIKIV	9	Unmodified	_HEIKTIKIV_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-SECPEP	A375_MHC_IP_R1	1	360.62908935546875	3	360.89737	1079.67028	-0.32609	-0.00011768	0.8754	0.00031593	0.54932	0.00019825	360.8976712624662	29.328	0.4062	29.328	29.149	29.555	0					21	7	4	0	0	0	0.74875	1	9137	9137		15.248	4.449	1	177560000			19350	5992	13919	14023	18956	18956					0.133631682994519
HEIKTIKIV	9	Unmodified	_HEIKTIKIV_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MATCH	A375_MHC_IP_R2	2		3	360.89737	1079.67028	-0.62403	-0.00022521	0.88959	0.00032105	0.26557	9.5842E-05	360.89768560095234	28.407	0.50529	29.086	28.858	29.364	0.67857	-0.12111	4.5729E-06	NaN	15.248	25	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190200000			19351	5992	13919	14023							0.133631682994519
HEILLHPRY	9	Unmodified	_HEILLHPRY_					0	0	0		ENST00000527435.5_1_11:62529161-62533976:+|nuORF;ENSG00000168002|ENST00000301788|POLR2G	ENST00000527435.5_1_11:62529161-62533976:+|nuORF	ENST00000527435.5_1_11:62529161-62533976:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	393.6206359863281	3	393.220735	1176.64038	-0.19129	-7.5221E-05	0.44226	0.00017391	0.25097	9.8687E-05	393.2208424119141	32.014	0.35375	32.751	32.555	32.909	0.73691					10	6	2	0	0	0	0.12748	1	11376	11376		45.74	27.367	1	2415100			19352	7251	13920	14024	18957	18957					0.05912229354112242
HEILLLRLLF	10	Unmodified	_HEILLLRLLF_					0	0	0		OR2A2|p.P166L|1|0.1|ENSG00000221989|chr7:144110079-144110079|C/T|missense_variant	OR2A2|p.P166L|1|0.1|ENSG00000221989|chr7:144110079-144110079|C/T|missense_variant	OR2A2|p.P166L|1|0.1|ENSG00000221989|chr7:144110079-144110079|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	633.9014282226562	2	633.900266	1265.78598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.01	1	120.54	120.04	121.04	0.5321								0	0	0	0.15591	1	45748	45748		1.6526	0	1				19353	15067	13921	14025	18958	18958					0.16371692150300987
HEILNPLVSK	10	Unmodified	_HEILNPLVSK_					0	0	0		ENSG00000119698|ENST00000304338|PPP4R4;PPP4R4|p.R170Q|1|0.29|ENSG00000119698|chr14:94231308-94231308|G/A|missense_variant	ENSG00000119698|ENST00000304338|PPP4R4	ENSG00000119698|ENST00000304338|PPP4R4	MULTI-MSMS	A375_MHC_IP_R2	2	384.2608642578125	3	383.892396	1148.65536	-0.37741	-0.00014488	0.027072	1.0393E-05	-0.35034	-0.00013449	383.89243112986077	23.728	0.81509	24.358	24.129	24.944	0.63014					33	15	5	0	0	0	0.71619	1	7613	7613		5.0475	0.93089	1	67111000			19354	3613	13922	14026	18959	18959					0.0869767643148407
HEINGLLVGF	10	Unmodified	_HEINGLLVGF_					0	0	0		ENST00000561862.5_1_16:2089927-2090351:-|nuORF;ENST00000562951.5_1_16:2089927-2094062:-|nuORF;ENST00000567727.5_1_16:2089927-2093790:-|nuORF;ENST00000561841.1_1_16:2089927-2093675:-|nuORF;ENST00000565406.5_1_16:2089927-2094819:-|nuORF;nc|ENSG00000065057|P78549-3|NTHL1;ENSG00000065057|ENST00000651570|NTHL1;nc|ENSG00000065057|P78549|NTHL1	ENST00000561862.5_1_16:2089927-2090351:-|nuORF	ENST00000561862.5_1_16:2089927-2090351:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	550.2008056640625	2	549.800749	1097.58694	-0.50533	-0.00027783	0.011285	6.2048E-06	-0.49404	-0.00027162	549.8008753545342	103.26	0.8662	103.26	102.96	103.83	0					31	16	3	0	0	0	0.58856	1	37925	37925		28.495	0	1	3655400			19355	1368	13923	14027	18960	18960					0.04205431851596586
HEINGLLVGF	10	Unmodified	_HEINGLLVGF_					0	0	0		ENST00000561862.5_1_16:2089927-2090351:-|nuORF;ENST00000562951.5_1_16:2089927-2094062:-|nuORF;ENST00000567727.5_1_16:2089927-2093790:-|nuORF;ENST00000561841.1_1_16:2089927-2093675:-|nuORF;ENST00000565406.5_1_16:2089927-2094819:-|nuORF;nc|ENSG00000065057|P78549-3|NTHL1;ENSG00000065057|ENST00000651570|NTHL1;nc|ENSG00000065057|P78549|NTHL1	ENST00000561862.5_1_16:2089927-2090351:-|nuORF	ENST00000561862.5_1_16:2089927-2090351:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	550.2000732421875	2	549.800749	1097.58694	-0.781	-0.00042939	-0.13569	-7.4602E-05	-0.91669	-0.000504	549.8007410822411	102.37	1.018	103.14	102.87	103.89	0.76428					27	19	2	0	0	0	0.1039	1	38778	38778		72.968	31.128	1	4420300			19356	1368	13923	14027	18961	18961					0.04205431851596586
HEIRVKYI	8	Unmodified	_HEIRVKYI_					0	0	0			REV__ENSG00000167210|ENST00000642948|LOXHD1	REV__ENSG00000167210|ENST00000642948|LOXHD1	MULTI-SECPEP	A375_MHC_IP_R2	2	353.6035461425781	3	353.209948	1056.60801	-0.5071	-0.00017911	3.0646	0.0010824	2.5575	0.00090332	353.2108416107882	19.251	0.25216	19.854	19.683	19.935	0.60308					6	4	2	0	0	0	0.97144	1	5927	5927		6.7232	0	1	546780	+		19357	20742	13924	14028	18962	18962					0.081974419511198
HEITEEEW	8	Unmodified	_HEITEEEW_					0	0	0		nc|ENSG00000105982|Q9H0A6-2|RNF32;ENSG00000105982|ENST00000317955|RNF32	nc|ENSG00000105982|Q9H0A6-2|RNF32	nc|ENSG00000105982|Q9H0A6-2|RNF32	MSMS	A375_MHC_IP_R2	2	536.7291259765625	2	536.732729	1071.4509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.55	1	45.319	44.819	45.819	0.7691								0	0	0	0.16876	1	16630	16630		14.582	2.0501	1				19358	2655	13925	14029	18963	18963					-0.08196307449702545
HEIVAIKKF	9	Unmodified	_HEIVAIKKF_					0	0	0		ENSG00000008086|ENST00000623535|CDKL5;nc|ENSG00000008086|O76039-1|CDKL5	ENSG00000008086|ENST00000623535|CDKL5	ENSG00000008086|ENST00000623535|CDKL5	MULTI-MSMS	A375_MHC_IP_R1	1	362.62176513671875	3	362.221965	1083.64407	0.037295	1.3509E-05	-0.5709	-0.00020679	-0.5336	-0.00019328	362.22168757211836	32.236	0.40954	32.236	32.024	32.434	0					17	7	3	0	0	0	0.54799	1	10421	10421		17.443	5.9248	1	3123300			19359	951	13926	14030	18964	18964					0.10558899127954646
HEIWHTGERRY	11	Unmodified	_HEIWHTGERRY_					0	0	0		ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	MULTI-MSMS	A375_MHC_IP_R1	1	371.98876953125	4	371.685188	1482.71164	0.51787	0.00019248	-0.30571	-0.00011363	0.21216	7.8857E-05	371.685080359456	20.94	1.222	20.94	20.638	21.86	0					68	23	4	0	0	0	0.73881	1	5580	5580		0.50596	0	1	33625000			19360	8075	13927	14031	18965	18965					-0.01040302679166416
HEIWHTGERRY	11	Unmodified	_HEIWHTGERRY_					0	0	0		ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	MULTI-SECPEP	A375_MHC_IP_R1	1	372.08538818359375	4	371.685188	1482.71164	0.59204	0.00022005	-0.3396	-0.00012623	0.25244	9.3826E-05	371.6851460641067	22.855	0.60381	22.855	22.572	23.176	0					24	11	4	0	0	0	0.99883	1	6182	6182		2.6312	1.5215	1	7776400			19361	8075	13927	14031	18966	18966					-0.01040302679166416
HEIWHTGERRY	11	Unmodified	_HEIWHTGERRY_					0	0	0		ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	MULTI-SECPEP	A375_MHC_IP_R1	1	495.6441650390625	3	495.244491	1482.71164	-0.18913	-9.3665E-05	-1.0137	-0.00050203	-1.2028	-0.0005957	495.2441845309393	20.946	0.91703	20.946	20.638	21.555	0					37	17	4	0	0	0	0.68993	1	5432	5432		45.603	32.747	1	6288500			19362	8075	13927	14031	18967	18967					-0.01040302679166416
HEIWHTGERRY	11	Unmodified	_HEIWHTGERRY_					0	0	0		ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	MULTI-MSMS	A375_MHC_IP_R2	2	371.9885559082031	4	371.685188	1482.71164	0.15013	5.5803E-05	-0.41102	-0.00015277	-0.26088	-9.6966E-05	371.6850551041696	19.45	0.961	20.054	19.683	20.644	0.60308					64	18	4	0	0	0	0.72773	2	6078	5860;6078		11.065	8.8126	1	18924000			19363	8075	13927	14031	18968;18969	18969					-0.01040302679166416
HEIWHTGERRY	11	Unmodified	_HEIWHTGERRY_					0	0	0		ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	MULTI-SECPEP	A375_MHC_IP_R2	2	495.6444396972656	3	495.244491	1482.71164	-0.76368	-0.00037821	-0.085225	-4.2207E-05	-0.8489	-0.00042041	495.24437886054824	19.469	0.90879	20.074	19.585	20.494	0.60454					45	17	4	0	0	0	0.9348	1	5937	5937		19.144	12.91	1	3951800			19364	8075	13927	14031	18970	18970					-0.01040302679166416
HEIYTVGKRF	10	Unmodified	_HEIYTVGKRF_					0	0	0		ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	A375_MHC_IP_R1	1	417.62786865234375	3	417.227779	1248.66151	-0.069455	-2.8978E-05	-0.18097	-7.5506E-05	-0.25043	-0.00010448	417.2276890093222	29.022	0.45687	29.022	28.795	29.252	0					21	8	3	0	0	0	0.011507	1	9022	9022		118.21	93.328	1	16003000			19365	5695	13928	14032	18971	18971					0.047121946629886224
HEIYTVGKRF	10	Unmodified	_HEIYTVGKRF_					0	0	0		ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	A375_MHC_IP_R2	2	417.6275939941406	3	417.227779	1248.66151	-0.32075	-0.00013382	-0.054866	-2.2891E-05	-0.37561	-0.00015672	417.22771677634034	28.21	0.60944	28.888	28.604	29.214	0.67857					25	11	4	0	0	0	0.011357	1	9725	9725		121.93	93.696	1	15564000			19366	5695	13928	14032	18972	18972					0.047121946629886224
HEKSFHRNM	9	Unmodified	_HEKSFHRNM_					0	0	0			REV__L1PA5_dup4054|chr5:147183212-147184419:-|1.0898619934076978|0.3037908791454333|1.84|459.0|12|2|sense	REV__L1PA5_dup4054|chr5:147183212-147184419:-|1.0898619934076978|0.3037908791454333|1.84|459.0|12|2|sense	MULTI-SECPEP	A375_MHC_IP_R2	2	396.60498046875	3	395.85758	1184.55091	-0.048152	-1.9062E-05	-0.31781	-0.00012581	-0.36596	-0.00014487	395.85724304413117	64.315	0.51036	65.055	64.8	65.31	0.74022					17	9	3	0	0	0	0.79429	1	24378	24378		7.1017	3.2254	1	1060700	+		19367	26891	13929	14033	18973	18973					-0.03398348596897449
HELEKVRKQLE	11	Unmodified	_HELEKVRKQLE_					0	0	0		ENSG00000197616|ENST00000405093|MYH6;ENSG00000092054|ENST00000355349|MYH7	ENSG00000197616|ENST00000405093|MYH6	ENSG00000197616|ENST00000405093|MYH6	MULTI-MSMS	A375_MHC_IP_R1	1	352.9208068847656	4	352.95313	1407.78341	0.059526	2.101E-05	-0.47752	-0.00016854	-0.418	-0.00014753	352.95299047411663	20.739	0.91733	20.739	20.079	20.997	0					26	17	3	0	0	0	0.73439	2	5384	5355;5384		4.7159	2.6312	1	2742600			19368	9180	13930	14034	18974;18975	18975					0.09583191954698123
HELEKVRKQLE	11	Unmodified	_HELEKVRKQLE_					0	0	0		ENSG00000197616|ENST00000405093|MYH6;ENSG00000092054|ENST00000355349|MYH7	ENSG00000197616|ENST00000405093|MYH6	ENSG00000197616|ENST00000405093|MYH6	MULTI-SECPEP	A375_MHC_IP_R2	2	352.9205627441406	4	352.95313	1407.78341	-0.50672	-0.00017885	0.47023	0.00016597	-0.036489	-1.2879E-05	353.2041874871422	19.277	0.85807	19.88	19.483	20.341	0.60308					32	16	3	0	0	0	0.95991	1	5947	5947		7.0371	4.6023	1	3182600			19369	9180	13930	14034	18976	18976					0.09583191954698123
HELELYNTGY	10	Unmodified	_HELELYNTGY_					0	0	0		nc|ENSG00000156535|Q6YHK3-2|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;nc|ENSG00000156535|Q6YHK3-3|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	MULTI-MSMS	A375_MHC_IP_R1	1	620.1878051757812	2	619.788035	1237.56152	-0.31615	-0.00019595	-0.027621	-1.7119E-05	-0.34377	-0.00021307	619.7879729690852	62.94	0.86997	62.94	62.557	63.427	0					47	16	4	0	0	0	5.3728E-07	2	22704	22704;22903		201.57	145.39	1	11558000			19370	6199	13931	14035	18977;18978	18977					-0.04776087461482348
HELELYNTGY	10	Unmodified	_HELELYNTGY_					0	0	0		nc|ENSG00000156535|Q6YHK3-2|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;nc|ENSG00000156535|Q6YHK3-3|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	MULTI-MSMS	A375_MHC_IP_R2	2	620.1875	2	619.788035	1237.56152	-0.83465	-0.00051731	0.022716	1.4079E-05	-0.81193	-0.00050323	619.7879811378425	62.292	1.0639	63.035	62.724	63.788	0.74263					37	20	3	0	0	0	5.3728E-07	3	23586	23586;23744;23759		201.57	136.33	1	8692600			19371	6199	13931	14035	18979;18980;18981	18979					-0.04776087461482348
HELEPSSPKS	10	Unmodified	_HELEPSSPKS_					0	0	0		nc|ENSG00000156531|Q8IWS0-4|PHF6;nc|ENSG00000156531|Q8IWS0-2|PHF6;nc|ENSG00000156531|Q8IWS0-5|PHF6;nc|ENSG00000156531|Q8IWS0-3|PHF6;ENSG00000156531|ENST00000370803|PHF6	nc|ENSG00000156531|Q8IWS0-4|PHF6	nc|ENSG00000156531|Q8IWS0-4|PHF6	MULTI-SECPEP	A375_MHC_IP_R2	2	371.2523193359375	3	370.852377	1109.5353	0.095029	3.5242E-05	0.42124	0.00015622	0.51626	0.00019146	370.85241561034417	19.408	0.60791	20.011	19.683	20.291	0.60308					23	11	4	0	0	0	0.87163	1	5964	5964		5.4027	0	1	4312800			19372	6198	13932	14036	18982	18982					-0.015083566329622045
HELHQVHGF	9	Unmodified	_HELHQVHGF_					0	0	0			REV__ENSG00000251322|ENST00000262795|SHANK3	REV__ENSG00000251322|ENST00000262795|SHANK3	MULTI-SECPEP	A375_MHC_IP_R2	2	368.2488708496094	3	368.517552	1102.53083	-0.049589	-1.8274E-05	1.3009	0.00047941	1.2513	0.00046113	368.8526374770533	23.649	0.40507	24.279	24.029	24.435	0.63014					11	7	2	0	0	0	0.65246	1	7667	7667		7.1017	0	1	1859100	+		19373	22846	13933	14037	18983	18983					-0.016337762652028687
HELKDLREY	9	Unmodified	_HELKDLREY_					0	0	0		nc|ENSG00000223802|P27544-2|CERS1;ENSG00000223802|ENST00000623882|CERS1	nc|ENSG00000223802|P27544-2|CERS1	nc|ENSG00000223802|P27544-2|CERS1	MULTI-SECPEP	A375_MHC_IP_R1	1	400.92767333984375	3	401.543655	1201.60914	-0.37981	-0.00015251	0.74285	0.00029829	0.36305	0.00014578	401.5437279881018	34.322	0.70675	34.322	34.001	34.708	0					21	13	2	0	0	0	0.74169	1	11316	11316		16.149	7.1729	1	1695200			19374	9689	13934	14038	18984	18984					0.016396115293900948
HELKDLREY	9	Unmodified	_HELKDLREY_					0	0	0		nc|ENSG00000223802|P27544-2|CERS1;ENSG00000223802|ENST00000623882|CERS1	nc|ENSG00000223802|P27544-2|CERS1	nc|ENSG00000223802|P27544-2|CERS1	MULTI-SECPEP	A375_MHC_IP_R2	2	400.927734375	3	401.543655	1201.60914	-0.50045	-0.00020095	0.49297	0.00019795	-0.0074811	-3.004E-06	401.5438443729409	33.52	0.50521	34.272	34.095	34.6	0.75225					17	9	2	0	0	0	0.77003	1	12136	12136		11.495	0	1	2359500			19375	9689	13934	14038	18985	18985					0.016396115293900948
HELKKSRIY	9	Unmodified	_HELKKSRIY_					0	0	0			REV__ENSG00000180509|ENST00000399286|KCNE1	REV__ENSG00000180509|ENST00000399286|KCNE1	MULTI-SECPEP	A375_MHC_IP_R1	1	392.285400390625	3	391.89614	1172.66659	-0.33962	-0.0001331	0.46261	0.0001813	0.12299	4.8199E-05	391.896239530654	29.342	0.25363	29.342	29.149	29.403	0					9	4	3	0	0	0	0.74597	1	9084	9084		5.4027	1.5568	1	3195700	+		19376	21615	13935	14039	18986	18986					0.08716498525609495
HELKKSRIY	9	Unmodified	_HELKKSRIY_					0	0	0			REV__ENSG00000180509|ENST00000399286|KCNE1	REV__ENSG00000180509|ENST00000399286|KCNE1	MULTI-MATCH	A375_MHC_IP_R2	2		3	391.89614	1172.66659	-0.64685	-0.0002535	0.61713	0.00024185	-0.029712	-1.1644E-05	392.2306881337568	28.459	0.25393	29.138	28.96	29.214	0.67857	-0.10202	1.4107E-05	NaN	5.4027	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2769500	+		19377	21615	13935	14039							0.08716498525609495
HELLEVIEE	9	Unmodified	_HELLEVIEE_					0	0	0			REV__tr|U7T2H3|U7T2H3_FUSNUMagnesiumtransporterMgtEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00566PE=3SV=1	REV__tr|U7T2H3|U7T2H3_FUSNUMagnesiumtransporterMgtEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00566PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	371.2523193359375	3	370.860761	1109.56045	0.10453	3.8767E-05	0.74963	0.00027801	0.85416	0.00031677	370.8607655293124	19.213	0.75737	19.817	19.533	20.291	0.60308					34	14	4	0	0	0	0.78753	1	5964	5964		2.4985	2.4985	1	7274800	+		19378	28742	13936	14040	18987	18987					0.010056981696152434
HELLTRCFSFH	11	Unmodified	_HELLTRCFSFH_					0	0	0			REV__ENSG00000130590|ENST00000369886|SAMD10	REV__ENSG00000130590|ENST00000369886|SAMD10	MSMS	A375_MHC_IP_R2	2	695.3408813476562	2	695.340246	1388.66594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.94	1	120.47	119.97	120.97	0.5321								0	0	0	0.16249	1	45715	45715		5.7319	0	1		+		19379	18550	13937	14041	18988	18988					-0.012846641857549912
HELNRPIY	8	Unmodified	_HELNRPIY_					0	0	0			REV__ENSG00000127083|ENST00000375550|OMD	REV__ENSG00000127083|ENST00000375550|OMD	MULTI-SECPEP	A375_MHC_IP_R2	2	521.6530151367188	2	521.277441	1040.54033	-1.0075	-0.00052517	1.8372	0.00095771	0.82977	0.00043254	521.277458377292	37.486	0.30677	38.256	38.02	38.327	0.7709					12	5	3	0	0	0	0.97021	1	13655	13655		15.847	0	1	1650500	+		19380	18411	13938	14042	18989	18989					0.02167992020326892
HELPDVSEF	9	Unmodified	_HELPDVSEF_					0	0	0		ENSG00000134153|ENST00000256545|EMC7;EMC7|p.M214I|1|0.43|ENSG00000134153|chr15:34084421-34084421|C/A|missense_variant	ENSG00000134153|ENST00000256545|EMC7	ENSG00000134153|ENST00000256545|EMC7	MULTI-MSMS	A375_MHC_IP_R2	2	537.6525268554688	2	536.750921	1071.48729	-0.78631	-0.00042205	0.03358	1.8024E-05	-0.75273	-0.00040403	536.7508505813614	69.503	0.86402	70.237	69.829	70.693	0.73421					30	16	3	0	0	0	0.25276	2	26301	26301;26411		34.102	5.6156	1	3079300			19381	4553	13939	14043	18990;18991	18990					-0.04559430552990307
HELPDVSEF	9	Unmodified	_HELPDVSEF_					0	0	0		ENSG00000134153|ENST00000256545|EMC7;EMC7|p.M214I|1|0.43|ENSG00000134153|chr15:34084421-34084421|C/A|missense_variant	ENSG00000134153|ENST00000256545|EMC7	ENSG00000134153|ENST00000256545|EMC7	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	536.750921	1071.48729	-0.47129	-0.00025297	0.21888	0.00011749	-0.25241	-0.00013548	536.7509048814674	70.11	0.81547	70.11	69.832	70.648	0	-0.063589	0.00011846	NaN	34.102	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3828600			19382	4553	13939	14043							-0.04559430552990307
HELSNNVKIK	10	Unmodified	_HELSNNVKIK_					0	0	0			REV__tr|U7SPQ7|U7SPQ7_FUSNUDNAmismatchrepairproteinsmutSfamilydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01865PE=4SV=1	REV__tr|U7SPQ7|U7SPQ7_FUSNUDNAmismatchrepairproteinsmutSfamilydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01865PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	394.9598388671875	3	394.559417	1180.65642	-0.26926	-0.00010624	1.2804	0.0005052	1.0111	0.00039896	394.55987960760285	23.713	0.45743	23.713	23.533	23.991	0					13	8	2	0	0	0	0.70442	1	6614	6614		10.315	0.55098	1	3997300	+		19383	28362	13940	14044	18992	18992					0.07331890800355723
HELVKRQCT	9	Unmodified	_HELVKRQCT_					0	0	0		nc|ENSG00000116761|P32929-2|CTH;nc|ENSG00000116761|P32929-3|CTH;ENSG00000116761|ENST00000370938|CTH	nc|ENSG00000116761|P32929-2|CTH	nc|ENSG00000116761|P32929-2|CTH	MULTI-SECPEP	A375_MHC_IP_R1	1	372.08538818359375	3	371.865964	1112.57606	0.59944	0.00022291	1.5783	0.00058691	2.1777	0.00080982	371.8664997026066	22.848	0.65482	22.848	22.572	23.227	0					19	12	2	0	0	0	0.75466	1	6182	6182		4.897	0	1	2881800			19384	3430	13941	14045	18993	18993					0.024277062056853538
HELVLTTKEY	10	Unmodified	_HELVLTTKEY_					0	0	0		ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-MSMS	A375_MHC_IP_R1	1	617.2294311523438	2	616.829703	1231.64485	-0.45728	-0.00028206	0.16043	9.8959E-05	-0.29685	-0.0001831	616.8297861910495	39.503	0.50554	39.503	39.289	39.794	0					22	9	3	0	0	0	3.1676E-05	1	13511	13511		165.58	105.51	1	9776200			19385	1441	13942	14046	18994	18994					0.03829648986379652
HELVLTTKEY	10	Unmodified	_HELVLTTKEY_					0	0	0		ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-MSMS	A375_MHC_IP_R2	2	617.2291259765625	2	616.829703	1231.64485	-0.96276	-0.00059386	-0.027038	-1.6678E-05	-0.9898	-0.00061054	616.829703945166	38.652	0.71498	39.427	39.25	39.965	0.77451					26	13	3	0	0	0	0.0015274	1	14248	14248		142.92	104.3	1	8875400			19386	1441	13942	14046	18995	18995					0.03829648986379652
HEMEKAFAF	9	Oxidation (M)	_HEM(Oxidation (M))EKAFAF_		HEM(1)EKAFAF		HEM(83)EKAFAF	0	0	1		nc|ENSG00000075975|Q9H000-2|MKRN2;ENSG00000075975|ENST00000170447|MKRN2	nc|ENSG00000075975|Q9H000-2|MKRN2	nc|ENSG00000075975|Q9H000-2|MKRN2	MULTI-MSMS	A375_MHC_IP_R1	1	563.6552124023438	2	563.255317	1124.49608	-0.15694	-8.8396E-05	-0.16865	-9.4995E-05	-0.32559	-0.00018339	563.255307071854	38.768	0.45665	38.768	38.526	38.983	0					19	8	3	0	0	0	0.020087	1	13186	13186		83.429	54.347	1	5402400			19387	1627	13943	14047	18996	18996		51			-0.061187801881942505
HEMEKAFAF	9	Oxidation (M)	_HEM(Oxidation (M))EKAFAF_		HEM(1)EKAFAF		HEM(83)EKAFAF	0	0	1		nc|ENSG00000075975|Q9H000-2|MKRN2;ENSG00000075975|ENST00000170447|MKRN2	nc|ENSG00000075975|Q9H000-2|MKRN2	nc|ENSG00000075975|Q9H000-2|MKRN2	MULTI-MSMS	A375_MHC_IP_R2	2	563.6546020507812	2	563.255317	1124.49608	-0.70152	-0.00039513	-0.12645	-7.1225E-05	-0.82797	-0.00046636	563.2552507175767	37.836	0.51318	38.611	38.382	38.895	0.77451					19	9	3	0	0	0	0.020087	2	13881	13820;13881		83.429	47.302	1	6505900			19388	1627	13943	14047	18997;18998	18998		51			-0.061187801881942505
HEMEKAFAF	9	Unmodified	_HEMEKAFAF_					0	0	0		nc|ENSG00000075975|Q9H000-2|MKRN2;ENSG00000075975|ENST00000170447|MKRN2	nc|ENSG00000075975|Q9H000-2|MKRN2	nc|ENSG00000075975|Q9H000-2|MKRN2	MULTI-MSMS	A375_MHC_IP_R2	2	555.3092041015625	2	555.257859	1108.50117	-0.97831	-0.00054322	0.087222	4.8431E-05	-0.89109	-0.00049478	555.257889100954	49.143	0.81034	49.901	49.69	50.5	0.75736					18	15	2	0	0	0	0.50892	1	18414	18414		19.362	1.227	1	1797800			19389	1627	13943	14048	18999	18999					-0.04874476325562682
HEMEKAFAF	9	Unmodified	_HEMEKAFAF_					0	0	0		nc|ENSG00000075975|Q9H000-2|MKRN2;ENSG00000075975|ENST00000170447|MKRN2	nc|ENSG00000075975|Q9H000-2|MKRN2	nc|ENSG00000075975|Q9H000-2|MKRN2	MULTI-MATCH	A375_MHC_IP_R1	1		2	555.257859	1108.50117	-0.43854	-0.0002435	-0.4548	-0.00025253	-0.89334	-0.00049604	555.2577522862651	49.977	0.51188	49.977	49.793	50.305	0	0.038376	-0.00030936	NaN	19.362	16	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1917900			19390	1627	13943	14048							-0.04874476325562682
HEMLEGNERY	10	Unmodified	_HEMLEGNERY_					0	0	0		nc|ENSG00000120251|P42262-4|GRIA2;nc|ENSG00000120251|P42262-2|GRIA2;ENSG00000120251|ENST00000264426|GRIA2;nc|ENSG00000120251|P42262-3|GRIA2	nc|ENSG00000120251|P42262-4|GRIA2	nc|ENSG00000120251|P42262-4|GRIA2	MULTI-SECPEP	A375_MHC_IP_R2	2	639.7108154296875	2	639.282594	1276.55064	-0.74909	-0.00047888	-0.8809	-0.00056314	-1.63	-0.001042	639.282537790837	96.181	0.15194	96.932	96.805	96.957	0.75045					4	2	2	0	0	0	0.87163	1	36494	36494		13.906	0	1	1676100			19391	3653	13944	14049	19000	19000					-0.07657813107402944
HENDITHFY	9	Unmodified	_HENDITHFY_					0	0	0		ENSG00000109685|ENST00000508803|NSD2;ENST00000353275.9_2_4:1944147-1980633:+|nuORF;nc|ENSG00000109685|O96028-4|NSD2;nc|ENSG00000109685|O96028-2|NSD2	ENSG00000109685|ENST00000508803|NSD2	ENSG00000109685|ENST00000508803|NSD2	MULTI-SECPEP	A375_MHC_IP_R1	1	588.6593017578125	2	588.259445	1174.50434	-0.23634	-0.00013903	-0.20837	-0.00012258	-0.44471	-0.0002616	588.259384542702	42.188	0.50472	42.188	41.982	42.487	0					18	9	2	0	0	0	0.035151	1	14617	14617		103.82	67.697	1	6081600			19392	2884	13945	14050	19001	19001					-0.0759350994721899
HENLLPVDFV	10	Unmodified	_HENLLPVDFV_					0	0	0			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MSMS	A375_MHC_IP_R2	2	394.9241027832031	3	394.876634	1181.60807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.665	1	34.417	33.917	34.917	0.75225								0	0	0	0.15451	1	12078	12078		6.1918	0.40842	1		+		19393	22389	13946	14051	19002	19002					0.02453397160456916
HENMREPDE	9	Unmodified	_HENMREPDE_					0	0	0			REV__ENSG00000169105|ENST00000306243|CHST14	REV__ENSG00000169105|ENST00000306243|CHST14	MULTI-MSMS	A375_MHC_IP_R1	1	578.6979370117188	2	578.738019	1155.46149	-0.56589	-0.0003275	0.59727	0.00034566	0.031385	1.8164E-05	578.738365424125	41.485	0.76708	41.485	41.164	41.932	0					23	14	3	0	0	0	0.64808	1	14289	14289		11.64	0.14559	1	4088900	+		19394	20907	13947	14052	19003	19003					-0.11002648066937581
HENMREPDE	9	Unmodified	_HENMREPDE_					0	0	0			REV__ENSG00000169105|ENST00000306243|CHST14	REV__ENSG00000169105|ENST00000306243|CHST14	MULTI-MSMS	A375_MHC_IP_R2	2	578.6984252929688	2	578.738019	1155.46149	-0.42624	-0.00024668	0.53584	0.00031011	0.10961	6.3433E-05	578.7382415066528	40.754	0.56023	41.529	41.335	41.895	0.77451					22	10	3	0	0	0	0.64808	1	15065	15065		11.64	3.7301	1	4551200	+		19395	20907	13947	14052	19004	19004					-0.11002648066937581
HEQLNKHLL	9	Unmodified	_HEQLNKHLL_					0	0	0			REV__ENST00000496877.1_1_3:100630362-100630893:-|nuORF	REV__ENST00000496877.1_1_3:100630362-100630893:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	377.603515625	3	377.88049	1130.61964	-0.1164	-4.3986E-05	0.4047	0.00015293	0.2883	0.00010894	377.8804684988165	23.752	0.25337	24.382	24.232	24.485	0.63014					10	4	3	0	0	0	0.17328	1	7701	7701		36.506	0	1	2629000	+		19396	20351	13948	14053	19005	19005					0.05955638974478461
HEQSGSSKYW	10	Unmodified	_HEQSGSSKYW_					0	0	0			REV__ENSG00000115604|ENST00000233957|IL18R1	REV__ENSG00000115604|ENST00000233957|IL18R1	MULTI-MSMS	A375_MHC_IP_R1	1	605.1699829101562	2	604.770177	1207.5258	-0.44432	-0.00026871	0.11082	6.7023E-05	-0.3335	-0.00020169	604.7702399895808	31.093	0.6064	31.093	30.908	31.514	0					23	11	3	0	0	0	0.62155	2	9962	9913;9962		19.257	4.4187	1	3410900	+		19397	17898	13949	14054	19006;19007	19007					-0.06966124918449168
HEQSGSSKYW	10	Unmodified	_HEQSGSSKYW_					0	0	0			REV__ENSG00000115604|ENST00000233957|IL18R1	REV__ENSG00000115604|ENST00000233957|IL18R1	MULTI-MSMS	A375_MHC_IP_R2	2	605.1694946289062	2	604.770177	1207.5258	-0.451	-0.00027275	-0.68533	-0.00041447	-1.1363	-0.00068722	604.7699008987889	30.463	0.55443	31.182	30.962	31.517	0.71857					20	10	3	0	0	0	0.62155	1	10719	10719		19.257	19.257	1	3286500	+		19398	17898	13949	14054	19008	19008					-0.06966124918449168
HEQSGSSKYW	10	Unmodified	_HEQSGSSKYW_					0	0	0			REV__ENSG00000115604|ENST00000233957|IL18R1	REV__ENSG00000115604|ENST00000233957|IL18R1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	604.770177	1207.5258	-0.451	-0.00027275	-0.68533	-0.00041447	-1.1363	-0.00068722	604.7699008987889	30.463	0.55443	31.182	30.962	31.517	0.71857	0.044571	-0.0005022	NaN	19.257	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3286500	+		19399	17898	13949	14054							-0.06966124918449168
HESGRIFTK	9	Unmodified	_HESGRIFTK_					0	0	0		BCS1L|p.S92F|1|0.23|ENSG00000074582|chr2:218661262-218661262|C/T|missense_variant	BCS1L|p.S92F|1|0.23|ENSG00000074582|chr2:218661262-218661262|C/T|missense_variant	BCS1L|p.S92F|1|0.23|ENSG00000074582|chr2:218661262-218661262|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	359.5853271484375	3	358.861207	1073.56179	-0.32351	-0.0001161	-0.30226	-0.00010847	-0.62577	-0.00022456	358.86114446023794	40.566	0.2548	41.34	41.183	41.438	0.77451					7	4	2	0	0	0	0.7911	1	14970	14970		4.5289	4.5289	1	503440			19400	230	13950	14055	19009	19009					0.027953770490285024
HESLLPCLDK	10	Unmodified	_HESLLPCLDK_					0	0	0			REV__ENSG00000283528|ENST00000636941|TCAF2C	REV__ENSG00000283528|ENST00000636941|TCAF2C	MULTI-MSMS	A375_MHC_IP_R2	2	385.57373046875	3	385.533991	1153.58014	-0.21781	-8.3972E-05	0.089297	3.4427E-05	-0.12851	-4.9546E-05	385.8685664287652	50.843	0.30254	51.597	51.412	51.715	0.75406					7	5	2	0	0	0	0.71245	1	19160	19160		3.5871	1.0886	1	1312400	+		19401	20987	13951	14056	19010	19010					0.00949750908716851
HETEDDTL	8	Unmodified	_HETEDDTL_					0	0	0			REV__nc|ENSG00000170011|Q8NFW9-2|MYRIP	REV__nc|ENSG00000170011|Q8NFW9-2|MYRIP	MSMS	A375_MHC_IP_R2	2	480.10992431640625	2	480.201261	958.38797	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.635	1	70.369	69.869	70.869	0.73421								0	0	0	0.16876	1	26389	26389		9.3474	0	1		+		19402	20962	13952	14057	19011	19011					-0.09288873237755979
HETSTGILY	9	Unmodified	_HETSTGILY_					0	0	0		tr|U7SPX2|U7SPX2_FUSNUAminotransferaseclassVdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01650PE=3SV=1	tr|U7SPX2|U7SPX2_FUSNUAminotransferaseclassVdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01650PE=3SV=1	tr|U7SPX2|U7SPX2_FUSNUAminotransferaseclassVdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01650PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	511.1529541015625	2	510.753464	1019.49238	-0.22462	-0.00011473	-0.51722	-0.00026417	-0.74185	-0.0003789	510.7531883511139	42.829	0.50749	42.829	42.587	43.095	0					22	9	3	0	0	0	0.3054	1	14842	14842		30.225	0	1	6322500			19403	29587	13953	14058	19012	19012					-0.01659126690390167
HETVNDFRE	9	Unmodified	_HETVNDFRE_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-SECPEP	A375_MHC_IP_R1	1	383.2439880371094	3	382.843993	1145.51015	0.56499	0.0002163	-0.13821	-5.2911E-05	0.42678	0.00016339	382.8437890529589	21.473	0.40606	21.473	21.25	21.656	0					20	7	4	0	0	0	0.73363	1	5636	5636		7.1017	0	1	17882000			19404	3290	13954	14059	19013	19013					-0.056784114355195925
HETWRDHIY	9	Unmodified	_HETWRDHIY_					0	0	0			REV__ENSG00000157350|ENST00000342907|ST3GAL2	REV__ENSG00000157350|ENST00000342907|ST3GAL2	MULTI-MSMS	A375_MHC_IP_R2	2	629.1924438476562	2	628.793986	1255.57342	-0.79336	-0.00049886	-0.9932	-0.00062452	-1.7866	-0.0011234	628.7930057576959	67.546	0.7115	68.282	67.9	68.612	0.73631					34	13	3	0	0	0	0.25276	1	25573	25573		34.102	1.797	1	13645000	+		19405	20023	13955	14060	19014	19014					-0.04414425927643606
HETYRLLKR	9	Unmodified	_HETYRLLKR_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;GTF3C1|p.S767Vfs*7|1|0.47|ENSG00000077235|chr16:27497688-27497688|T/-|frameshift_variant	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	A375_MHC_IP_R1	1	406.25933837890625	3	405.903406	1214.68839	-0.41413	-0.0001681	-0.70466	-0.00028602	-1.1188	-0.00045412	405.90319429191925	34.379	0.35322	34.379	34.154	34.507	0					9	6	2	0	0	0	0.63811	1	11319	11319		8.1555	1.9637	1	643280			19406	1649	13956	14061	19015	19015					0.08963303274163081
HETYRLLKR	9	Unmodified	_HETYRLLKR_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;GTF3C1|p.S767Vfs*7|1|0.47|ENSG00000077235|chr16:27497688-27497688|T/-|frameshift_variant	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	A375_MHC_IP_R2	2	406.259033203125	3	405.903406	1214.68839	-0.50818	-0.00020627	0.042165	1.7115E-05	-0.46601	-0.00018916	405.9034214905214	33.807	0.45477	34.559	34.348	34.803	0.75225					12	8	2	0	0	0	0.63811	1	12092	12092		8.1555	1.9637	1	1296600			19407	1649	13956	14061	19016	19016					0.08963303274163081
HEVDQFLNF	9	Unmodified	_HEVDQFLNF_					0	0	0		nc|ENSG00000182158|Q70SY1-2|CREB3L2;ENSG00000182158|ENST00000330387|CREB3L2;nc|ENSG00000182158|Q70SY1-3|CREB3L2	nc|ENSG00000182158|Q70SY1-2|CREB3L2	nc|ENSG00000182158|Q70SY1-2|CREB3L2	MULTI-SECPEP	A375_MHC_IP_R1	1	575.1726684570312	2	574.772188	1147.52982	-0.22489	-0.00012926	-0.80036	-0.00046002	-1.0252	-0.00058928	574.7722840926002	94.043	0.60561	94.043	93.635	94.241	0					38	11	5	0	0	0	0.11711	1	34560	34560		69.105	20.759	1	3613300			19408	8380	13957	14062	19017	19017					-0.03804035424764152
HEVDQFLNF	9	Unmodified	_HEVDQFLNF_					0	0	0		nc|ENSG00000182158|Q70SY1-2|CREB3L2;ENSG00000182158|ENST00000330387|CREB3L2;nc|ENSG00000182158|Q70SY1-3|CREB3L2	nc|ENSG00000182158|Q70SY1-2|CREB3L2	nc|ENSG00000182158|Q70SY1-2|CREB3L2	MULTI-SECPEP	A375_MHC_IP_R2	2	575.172119140625	2	574.772188	1147.52982	-0.10016	-5.7568E-05	0.05703	3.2779E-05	-0.043127	-2.4788E-05	574.7725539935719	93.309	0.60967	94.048	93.646	94.256	0.73902					32	11	4	0	0	0	0.13208	1	35450	35450		66.457	28.483	1	3259500			19409	8380	13957	14062	19018	19018					-0.03804035424764152
HEVEGVLS	8	Unmodified	_HEVEGVLS_					0	0	0		nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;ENSG00000083807|ENST00000263093|SLC27A5	nc|ENSG00000083807|Q9Y2P5-2|SLC27A5	nc|ENSG00000083807|Q9Y2P5-2|SLC27A5	MSMS	A375_MHC_IP_R2	2	435.2667236328125	2	435.2218	868.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.544	1	43.316	42.816	43.816	0.7724								0	0	0	0.16876	1	15828	15828		9.3474	0	1				19410	1787	13958	14063	19019	19019					-0.010430674076019386
HEVETAQGQRF	11	Unmodified	_HEVETAQGQRF_					0	0	0		ENST00000526449.1_1_11:65767491-65767878:-|nuORF;ENSG00000175376|ENST00000533544|EIF1AD	ENST00000526449.1_1_11:65767491-65767878:-|nuORF	ENST00000526449.1_1_11:65767491-65767878:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	651.7150268554688	2	651.315283	1300.61601	-0.31228	-0.00020339	-0.24643	-0.00016051	-0.55871	-0.0003639	651.3150817484403	20.206	0.35463	20.206	20.03	20.384	0					13	6	3	0	0	0	0.17512	1	5174	5174		57.204	44.331	1	3817900			19411	7955	13959	14064	19020	19020					-0.022270755900763106
HEVETAQGQRF	11	Unmodified	_HEVETAQGQRF_					0	0	0		ENST00000526449.1_1_11:65767491-65767878:-|nuORF;ENSG00000175376|ENST00000533544|EIF1AD	ENST00000526449.1_1_11:65767491-65767878:-|nuORF	ENST00000526449.1_1_11:65767491-65767878:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	651.714599609375	2	651.315283	1300.61601	-1.0311	-0.0006716	0.47359	0.00030846	-0.55755	-0.00036314	651.3154685583823	19.11	0.30101	19.713	19.583	19.884	0.60308					10	5	3	0	0	0	0.71717	1	5894	5894		14.218	7.1164	1	2604300			19412	7955	13959	14064	19021	19021					-0.022270755900763106
HEVLTFIKY	9	Unmodified	_HEVLTFIKY_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-SECPEP	A375_MHC_IP_R1	1	575.7184448242188	2	575.318774	1148.623	-0.14059	-8.0883E-05	0.38125	0.00021934	0.24066	0.00013846	575.3188873535378	68.743	0.60786	68.743	68.565	69.173	0					25	11	3	0	0	0	0.13208	1	24928	24928		66.457	43.72	1	6073700			19413	5445	13960	14065	19022	19022					0.054628890284675435
HEVLTFIKY	9	Unmodified	_HEVLTFIKY_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-SECPEP	A375_MHC_IP_R2	2	575.7186279296875	2	575.318774	1148.623	-0.11376	-6.545E-05	-0.18719	-0.0001077	-0.30096	-0.00017315	575.318567037836	67.926	0.66037	68.661	68.358	69.019	0.73512					25	12	3	0	0	0	0.074405	1	25740	25740		79.596	43.469	1	3382700			19414	5445	13960	14065	19023	19023					0.054628890284675435
HEVPLRIGF	9	Unmodified	_HEVPLRIGF_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	A375_MHC_IP_R1	1	534.15576171875	2	534.303458	1066.59236	-0.83441	-0.00044583	0.45681	0.00024407	-0.37761	-0.00020176	534.3037741382547	66.067	0.45535	66.067	65.819	66.275	0					15	8	2	0	0	0	0.74412	1	23941	23941		14.838	4.0143	1	1533400			19415	2385	13961	14066	19024	19024					0.061731554340894945
HEVTLVSDFH	10	Unmodified	_HEVTLVSDFH_					0	0	0			REV__nc|ENSG00000166343|Q4VC12-3|MSS51	REV__nc|ENSG00000166343|Q4VC12-3|MSS51	MULTI-MSMS	A375_MHC_IP_R1	1	395.5963134765625	3	395.196256	1182.56694	-0.2044	-8.0777E-05	0.32098	0.00012685	0.11659	4.6074E-05	395.1963144091861	27.986	0.90722	27.986	27.482	28.39	0					32	17	2	0	0	0	0.36703	1	8517	8517		24.882	12.026	1	5463600	+		19416	27336	13962	14067	19025	19025					-0.017043638790028126
HEVTLVSDFH	10	Unmodified	_HEVTLVSDFH_					0	0	0			REV__nc|ENSG00000166343|Q4VC12-3|MSS51	REV__nc|ENSG00000166343|Q4VC12-3|MSS51	MULTI-SECPEP	A375_MHC_IP_R1	1	394.9244384765625	3	395.196256	1182.56694	-0.084102	-3.3237E-05	-0.90168	-0.00035634	-0.98579	-0.00038958	395.1961562164925	34.288	0.55621	34.288	34.052	34.608	0					25	10	3	0	0	0	0.91932	1	11344	11344		15.739	11.862	1	2414100	+		19417	27336	13962	14067	19026	19026					-0.017043638790028126
HEVTLVSDFH	10	Unmodified	_HEVTLVSDFH_					0	0	0			REV__nc|ENSG00000166343|Q4VC12-3|MSS51	REV__nc|ENSG00000166343|Q4VC12-3|MSS51	MULTI-SECPEP	A375_MHC_IP_R1	1	395.25091552734375	3	395.196256	1182.56694	-0.2044	-8.0777E-05	0.32098	0.00012685	0.11659	4.6074E-05	395.1963144091861	27.986	0.90722	27.986	27.482	28.39	0					32	17	2	0	0	0	0.89761	1	8480	8480		19.626	12.524	1	5463600	+		19418	27336	13962	14067	19027	19027					-0.017043638790028126
HEVTLVSDFH	10	Unmodified	_HEVTLVSDFH_					0	0	0			REV__nc|ENSG00000166343|Q4VC12-3|MSS51	REV__nc|ENSG00000166343|Q4VC12-3|MSS51	MULTI-SECPEP	A375_MHC_IP_R2	2	395.2838134765625	3	395.196256	1182.56694	-0.10103	-3.9928E-05	-0.076838	-3.0366E-05	-0.17787	-7.0294E-05	395.19618438756237	27.394	0.8669	28.073	27.484	28.351	0.67857					29	16	2	0	0	0	0.81654	1	9393	9393		26.021	6.0338	1	8090800	+		19419	27336	13962	14067	19028	19028					-0.017043638790028126
HEVTTDNKLL	10	Unmodified	_HEVTTDNKLL_					0	0	0		nc|ENSG00000145451|O75311-2|GLRA3;ENSG00000145451|ENST00000274093|GLRA3	nc|ENSG00000145451|O75311-2|GLRA3	nc|ENSG00000145451|O75311-2|GLRA3	MULTI-SECPEP	A375_MHC_IP_R2	2	584.6927490234375	2	585.311677	1168.6088	-0.98472	-0.00057637	-1.5192	-0.00088921	-2.5039	-0.0014656	585.3108796371206	33.621	0.15182	34.373	34.247	34.399	0.75225					4	2	2	0	0	0	0.85226	1	12022	12022		14.838	2.3067	1	978930			19420	5561	13963	14068	19029	19029					0.031241918095247456
HEVTVEKKW	9	Unmodified	_HEVTVEKKW_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	A375_MHC_IP_R1	1	385.5833435058594	3	385.876746	1154.60841	0.35674	0.00013766	-1.3944	-0.00053806	-1.0376	-0.0004004	385.87637181168293	20.394	0.76618	20.394	20.129	20.895	0					19	14	2	0	0	0	0.34544	1	5230	5230		49.742	36.127	1	4423800			19421	3055	13964	14069	19030	19030					0.037288168803115695
HEVTVEKKWGQ	11	Unmodified	_HEVTVEKKWGQ_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	A375_MHC_IP_R1	1	447.9701232910156	3	447.570093	1339.68845	-0.055455	-2.482E-05	0.12934	5.7891E-05	0.073889	3.307E-05	447.57009348639974	20.194	0.60764	20.194	19.877	20.485	0					32	11	4	0	0	0	0.00028404	2	5115	5082;5115		99.318	75.354	1	6601800			19422	3055	13965	14070	19031;19032	19032					0.03219258483500198
HEVTVEKKWGQ	11	Unmodified	_HEVTVEKKWGQ_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	A375_MHC_IP_R2	2	448.2618408203125	3	447.570093	1339.68845	-0.60905	-0.00027259	0.12772	5.7165E-05	-0.48133	-0.00021543	447.570062417495	19.054	0.29996	19.658	19.533	19.833	0.60308					14	5	3	0	0	0	0.72494	1	5859	5859		11.065	5.1971	1	13121000			19423	3055	13965	14070	19033	19033					0.03219258483500198
HEWQDWIWQHF	11	Unmodified	_HEWQDWIWQHF_					0	0	0			REV__ENST00000326303.4_1_14:74061802-74061892:+|nuORF	REV__ENST00000326303.4_1_14:74061802-74061892:+|nuORF	MSMS	A375_MHC_IP_R1	1	537.9075927734375	3	537.909109	1610.7055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.64	1	116.64	116.14	117.14	0								0	0	0	0.16352	1	42788	42788		0.40827	0.31342	1		+		19424	23602	13966	14071	19034	19034					-0.07542820910680348
HEWRQKSLY	9	Unmodified	_HEWRQKSLY_					0	0	0			REV__nc|ENSG00000050628|P43115-2|PTGER3;REV__nc|ENSG00000050628|P43115-4|PTGER3	REV__nc|ENSG00000050628|P43115-2|PTGER3	MULTI-SECPEP	A375_MHC_IP_R2	2	624.2199096679688	2	623.820004	1245.62546	-1.1286	-0.00070407	0.032389	2.0205E-05	-1.0963	-0.00068387	623.8199569320426	38.581	0.40728	39.355	39.149	39.556	0.77451					12	7	3	0	0	0	0.74597	1	14241	14241		12.241	9.2454	1	2468400	+		19425	27103;27104	13967	14072	19035	19035					0.012467374861444114
HEYLGRRSW	9	Unmodified	_HEYLGRRSW_					0	0	0		ENSG00000099991|ENST00000263119|CABIN1;nc|ENSG00000099991|Q9Y6J0-2|CABIN1	ENSG00000099991|ENST00000263119|CABIN1	ENSG00000099991|ENST00000263119|CABIN1	MULTI-MSMS	A375_MHC_IP_R1	1	402.27203369140625	3	401.872106	1202.59449	-0.58249	-0.00023409	0.56968	0.00022894	-0.012804	-5.1457E-06	401.872229079656	25.841	0.50642	25.841	25.664	26.17	0					20	9	3	0	0	0	0.36834	1	7638	7638		19.626	4.6688	1	6868900			19426	2097	13968	14073	19036	19036					0.001295841718729207
HEYLGRRSW	9	Unmodified	_HEYLGRRSW_					0	0	0		ENSG00000099991|ENST00000263119|CABIN1;nc|ENSG00000099991|Q9Y6J0-2|CABIN1	ENSG00000099991|ENST00000263119|CABIN1	ENSG00000099991|ENST00000263119|CABIN1	MULTI-MSMS	A375_MHC_IP_R2	2	402.2720947265625	3	401.872106	1202.59449	-0.44264	-0.00017788	-0.090085	-3.6202E-05	-0.53272	-0.00021409	401.8720541035797	25.255	0.45918	25.898	25.619	26.078	0.64368					20	8	3	0	0	0	0.018546	1	8417	8417		76.825	46.984	1	7036600			19427	2097	13968	14073	19037	19037					0.001295841718729207
HEYLLHKVK	9	Unmodified	_HEYLLHKVK_					0	0	0			REV__nc|ENSG00000141013|O95995-2|GAS8	REV__nc|ENSG00000141013|O95995-2|GAS8	MULTI-SECPEP	A375_MHC_IP_R2	2	390.26470947265625	3	389.560869	1165.66078	-0.64733	-0.00025217	0.26867	0.00010466	-0.37866	-0.00014751	389.5609906816918	33.556	0.45681	34.308	34.043	34.5	0.75225					11	8	2	0	0	0	0.80332	1	11987	11987		2.4985	0	1	3541400	+		19428	19241	13969	14074	19038	19038					0.08457400013935512
HEYNLDIPEG	10	Unmodified	_HEYNLDIPEG_					0	0	0		ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	MULTI-MSMS	A375_MHC_IP_R2	2	396.1081237792969	3	396.184016	1185.53022	-0.64437	-0.00025529	0.58678	0.00023247	-0.057586	-2.2815E-05	396.184187202068	33.801	0.45477	34.553	34.348	34.803	0.75225					21	8	3	0	0	0	0.70329	1	12072	12072		6.1918	1.4759	1	4706400			19429	8467	13970	14075	19039	19039					-0.0551266049556034
HEYTTKEIF	9	Unmodified	_HEYTTKEIF_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-SECPEP	A375_MHC_IP_R1	1	584.1954345703125	2	584.287671	1166.56079	-0.29387	-0.00017171	-0.10204	-5.9621E-05	-0.39591	-0.00023133	584.2872953347133	37.795	0.3567	37.795	37.556	37.913	0					15	6	3	0	0	0	0.14554	1	12727	12727		57.249	45.754	1	1858800			19430	9362	13971	14076	19040	19040					-0.015828821105287716
HEYYLEQR	8	Unmodified	_HEYYLEQR_					0	0	0		ENSG00000178021|ENST00000317802|TSPYL6	ENSG00000178021|ENST00000317802|TSPYL6	ENSG00000178021|ENST00000317802|TSPYL6	MULTI-MSMS	A375_MHC_IP_R2	2	570.6765747070312	2	569.269813	1136.52507	-0.54984	-0.00031301	1.0602	0.00060355	0.51038	0.00029055	569.2702830217436	35.005	1.4694	35.768	35.017	36.486	0.76338					82	28	4	0	0	0	0.75322	1	12863	12863		19.439	1.304	1	43954000			19431	8123	13972	14077	19041	19041					-0.03772919567518329
HEYYVKWFQ	9	Unmodified	_HEYYVKWFQ_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	A375_MHC_IP_R2	2	650.189453125	2	650.31148	1298.60841	-1.1207	-0.00072882	1.301	0.00084607	0.18031	0.00011726	650.3122052786855	24.737	0.50676	25.381	25.212	25.719	0.64368					16	9	2	0	0	0	0.65246	1	8317	8317		21.747	5.1808	1	3687300	+		19432	18137	13973	14078	19042	19042					-0.028951831196991407
HFAPLLRKV	9	Unmodified	_HFAPLLRKV_					0	0	0		ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123;ENST00000486102.5_1_3:49728598-49742525:+|nuORF	ENSG00000164068|ENST00000327697|RNF123	ENSG00000164068|ENST00000327697|RNF123	MULTI-SECPEP	A375_MHC_IP_R1	1	360.61322021484375	3	360.894071	1079.66038	0.088139	3.1809E-05	-0.57833	-0.00020872	-0.49019	-0.00017691	361.22816199799144	40.177	0.35675	40.177	39.948	40.304	0					10	6	2	0	0	0	0.75519	1	13826	13826		14.405	11.124	1	953580			19433	6769	13974	14079	19043	19043					0.12374025084727691
HFAQKRKPA	9	Unmodified	_HFAQKRKPA_					0	0	0			REV__ENSG00000114857|ENST00000232978|NKTR	REV__ENSG00000114857|ENST00000232978|NKTR	MULTI-MSMS	A375_MHC_IP_R2	2	361.9451599121094	3	361.545442	1081.6145	-0.47646	-0.00017226	-0.063737	-2.3044E-05	-0.5402	-0.00019531	361.54541485780516	23.539	0.30354	24.17	24.029	24.333	0.63014					8	5	2	0	0	0	0.64136	1	7626	7626		12.241	0.74595	1	2833500	+		19434	17844	13975	14080	19044	19044					0.07695379902520472
HFARVAVV	8	Unmodified	_HFARVAVV_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MSMS	A375_MHC_IP_R2	2	449.6663818359375	2	449.766512	897.518471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.69	1	141.73	141.23	142.23	0.036499								0	0	0	0.16876	1	55411	55411		2.8892	2.0956	1				19435	6654	13976	14081	19045	19045					0.06561232062415456
HFDKKFWV	8	Unmodified	_HFDKKFWV_					0	0	0			REV__ENST00000359142.7_1_12:90049744-90049822:-|nuORF	REV__ENST00000359142.7_1_12:90049744-90049822:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	554.192138671875	2	553.792727	1105.5709	-0.33025	-0.00018289	0.09901	5.4831E-05	-0.23124	-0.00012806	553.7925683119156	92.842	1.1719	92.842	92.463	93.635	0					46	22	4	0	0	0	0.93661	1	34064	34064		21.747	1.293	1	5454800	+		19436	23871	13977	14082	19046	19046					0.02233770405382529
HFDKKFWV	8	Unmodified	_HFDKKFWV_					0	0	0			REV__ENST00000359142.7_1_12:90049744-90049822:-|nuORF	REV__ENST00000359142.7_1_12:90049744-90049822:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	554.1915283203125	2	553.792727	1105.5709	-0.69281	-0.00038367	-0.28774	-0.00015935	-0.98055	-0.00054302	553.7921560747591	92.14	1.7735	92.879	92.176	93.95	0.73902					57	34	3	0	0	0	0.87643	1	34963	34963		32.305	0	1	4765400	+		19437	23871	13977	14082	19047	19047					0.02233770405382529
HFDPLLDPRS	10	Unmodified	_HFDPLLDPRS_					0	0	0			REV__nc|ENSG00000144712|O75155-2|CAND2	REV__nc|ENSG00000144712|O75155-2|CAND2	MSMS	A375_MHC_IP_R2	2	399.6048583984375	3	399.540134	1195.59857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.625	1	38.399	37.899	38.899	0.77398								0	0	0	0.15464	1	13782	13782		5.7834	0.73591	1		+		19438	19440	13978	14083	19048	19048					0.008596288749458836
HFFFLAAFTW	10	Unmodified	_HFFFLAAFTW_					0	0	0		nc|ENSG00000150471|Q9HAR2-2|ADGRL3;nc|ENSG00000150471|Q9HAR2|ADGRL3;nc|ENSG00000150471|Q9HAR2-4|ADGRL3;ENSG00000150471|ENST00000683033|ADGRL3	nc|ENSG00000150471|Q9HAR2-2|ADGRL3	nc|ENSG00000150471|Q9HAR2-2|ADGRL3	MULTI-MSMS	A375_MHC_IP_R2	2	429.9481201171875	3	429.550082	1285.62842	-0.49015	-0.00021054	-4.4146	-0.0018963	-4.9047	-0.0021068	429.5484466611329	19.217	0.70703	19.82	19.533	20.241	0.60308					20	13	2	0	0	0	0.71266	1	5934	5934		6.6304	0.84694	1	1857100			19439	5845	13979	14084	19049	19049					-0.0029738738905962236
HFFQNPGSGEY	11	Unmodified	_HFFQNPGSGEY_					0	0	0		ENST00000579071.1_1_18:71825586-71825712:+|nuORF	ENST00000579071.1_1_18:71825586-71825712:+|nuORF	ENST00000579071.1_1_18:71825586-71825712:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	428.5876159667969	3	428.18776	1281.54145	-0.24737	-0.00010592	0.13268	5.6813E-05	-0.11469	-4.9109E-05	428.18763016079	32.551	0.96646	33.288	33.01	33.977	0.73692					56	18	5	0	0	0	0.73078	1	11557	11557		4.1166	0	1	57519000			19440	13661	13980	14085	19050	19050					-0.08805838401394794
HFGEAADP	8	Unmodified	_HFGEAADP_					0	0	0		CEP162|p.R878Gfs*19|1|0.44|ENSG00000135315|chr6:84161790-84161790|G/-|frameshift_variant;nc|ENSG00000135315|Q5TB80-2|CEP162;ENSG00000135315|ENST00000403245|CEP162	CEP162|p.R878Gfs*19|1|0.44|ENSG00000135315|chr6:84161790-84161790|G/-|frameshift_variant	CEP162|p.R878Gfs*19|1|0.44|ENSG00000135315|chr6:84161790-84161790|G/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	422.142333984375	2	422.185217	842.355882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.138	1	33.138	32.638	33.638	0								0	0	0	0.16876	1	10784	10784		5.7604	0	1				19441	363	13981	14086	19051	19051					-0.07160196130234908
HFGPVCFA	8	Unmodified	_HFGPVCFA_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MSMS	A375_MHC_IP_R1	1	439.2760009765625	2	439.204899	876.395244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.017	1	15.017	14.517	15.517	0								0	0	0	0.16876	1	3449	3449		0.79363	0	1				19442	7640	13982	14087	19052	19052					-0.04789767380373178
HFHGNEAFSL	10	Unmodified	_HFHGNEAFSL_					0	0	0			REV__nc|ENSG00000125812|Q9H116-4|GZF1	REV__nc|ENSG00000125812|Q9H116-4|GZF1	MULTI-MSMS	A375_MHC_IP_R1	1	580.1700439453125	2	579.76998	1157.52541	-0.00060475	-3.5061E-07	0.2035	0.00011799	0.2029	0.00011764	579.7698492756024	47.886	0.95913	47.886	47.567	48.526	0					29	18	3	0	0	0	0.70496	1	16860	16860		10.074	0.6908	1	4676100	+		19443	18364	13983	14088	19053	19053					-0.04705499847682404
HFIILFLF	8	Unmodified	_HFIILFLF_					0	0	0		ENST00000371419.6_1_20:52835675-52835720:+|nuORF	ENST00000371419.6_1_20:52835675-52835720:+|nuORF	ENST00000371419.6_1_20:52835675-52835720:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	525.2095947265625	2	525.312764	1048.61097	-0.1924	-0.00010107	-3.518	-0.0018481	-3.7104	-0.0019491	525.3111276823951	126.41	0.30383	126.41	126.25	126.56	0					6	5	2	0	0	0	0.972	1	48292	48292		11.114	0.93107	1	3121000			19444	11176	13984	14089	19054	19054					0.08861317075911757
HFILEEKAK	9	Unmodified	_HFILEEKAK_					0	0	0			REV__ENSG00000167721|ENST00000301364|TSR1	REV__ENSG00000167721|ENST00000301364|TSR1	MULTI-MSMS	A375_MHC_IP_R1	1	372.6017150878906	3	372.213358	1113.61824	0.54725	0.00020369	-0.24272	-9.0343E-05	0.30453	0.00011335	372.21316314102444	42.81	0.40537	42.81	42.587	42.993	0					16	7	3	0	0	0	0.75032	2	14831	14784;14831		2.4985	0.21571	1	1934700	+		19445	20787	13985	14090	19055;19056	19056					0.06598004885699993
HFLGNLCHVW	10	Unmodified	_HFLGNLCHVW_					0	0	0			REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MULTI-MSMS	A375_MHC_IP_R1	1	613.1981811523438	2	613.300393	1224.58623	0.090936	5.5771E-05	0.64031	0.0003927	0.73125	0.00044848	613.3006519415158	69.255	1.2154	69.255	68.869	70.085	0					41	23	3	0	0	0	0.70496	1	25071	25071		10.074	0	1	5159400	+		19446	18302	13986	14091	19057	19057					-0.017076860691076945
HFLQWEPGEH	10	Unmodified	_HFLQWEPGEH_					0	0	0		ENST00000396478.3_1_1:46179937-46180075:-|nuORF	ENST00000396478.3_1_1:46179937-46180075:-|nuORF	ENST00000396478.3_1_1:46179937-46180075:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	640.6967163085938	2	640.296362	1278.57817	-0.57838	-0.00037033	0.69729	0.00044647	0.11891	7.6139E-05	640.2968785888348	50.94	1.32	50.94	50.254	51.575	0					35	25	2	0	0	0	0.69833	1	18037	18037		13.042	2.2185	1	4261000			19447	11490	13987	14092	19058	19058					-0.049975417848600046
HFLQWEPGEH	10	Unmodified	_HFLQWEPGEH_					0	0	0		ENST00000396478.3_1_1:46179937-46180075:-|nuORF	ENST00000396478.3_1_1:46179937-46180075:-|nuORF	ENST00000396478.3_1_1:46179937-46180075:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	640.6970825195312	2	640.296362	1278.57817	-0.64506	-0.00041303	0.64133	0.00041064	-0.0037305	-2.3886E-06	640.2968820398052	46.262	2.3825	47.027	45.897	48.279	0.76518					128	46	4	0	0	0	0.69833	1	16955	16955		13.042	13.042	1	66715000			19448	11490	13987	14092	19059	19059					-0.049975417848600046
HFLQWEPGEH	10	Unmodified	_HFLQWEPGEH_					0	0	0		ENST00000396478.3_1_1:46179937-46180075:-|nuORF	ENST00000396478.3_1_1:46179937-46180075:-|nuORF	ENST00000396478.3_1_1:46179937-46180075:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	640.296362	1278.57817	-0.57838	-0.00037033	0.69729	0.00044647	0.11891	7.6139E-05	640.2968785888348	50.94	1.32	50.94	50.254	51.575	0	0.11804	2.6681E-05	NaN	13.042	35	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4261000			19449	11490	13987	14092							-0.049975417848600046
HFMIRRVKRFL	11	Unmodified	_HFMIRRVKRFL_					0	0	0		BEST3|p.S390F|1|0.21|ENSG00000127325|chr12:69655745-69655745|G/A|missense_variant	BEST3|p.S390F|1|0.21|ENSG00000127325|chr12:69655745-69655745|G/A|missense_variant	BEST3|p.S390F|1|0.21|ENSG00000127325|chr12:69655745-69655745|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	752.3477783203125	2	751.94809	1501.88163	-0.78521	-0.00059043	0.16659	0.00012527	-0.61862	-0.00046517	751.9480449796484	133.92	2.3941	134.08	133.65	136.05	0.16487					129	46	5	0	0	0	0.73924	1	52665	52665		0.35063	0.35063	1	103670000			19450	235	13988	14093	19060	19060					0.15076141789563735
HFPGEFGS	8	Unmodified	_HFPGEFGS_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MSMS	A375_MHC_IP_R1	1	439.16143798828125	2	439.195585	876.376617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.92	1	139.92	139.42	140.42	0								0	0	0	0.16876	1	53761	53761		5.2307	2.6532	1				19451	7930	13989	14094	19061	19061					-0.0665160575056234
HFPGLASEL	9	Unmodified	_HFPGLASEL_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-MSMS	A375_MHC_IP_R1	1	485.6629943847656	2	485.753267	969.491981	-0.28509	-0.00013848	-0.078309	-3.8039E-05	-0.3634	-0.00017652	485.75313310457886	79.82	0.81633	79.82	79.574	80.39	0					22	15	2	0	0	0	0.16661	1	29113	29113		40.449	10.224	1	1129200			19452	2701	13990	14095	19062	19062					0.006014983804220719
HFPGLASEL	9	Unmodified	_HFPGLASEL_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-SECPEP	A375_MHC_IP_R2	2	486.1528625488281	2	485.753267	969.491981	-0.51962	-0.00025241	-0.45038	-0.00021877	-0.97	-0.00047118	485.7529880776038	78.844	0.71061	79.588	79.337	80.047	0.74474					19	13	2	0	0	0	0.15439	1	29963	29963		56.541	26.316	1	1488300			19453	2701	13990	14095	19063	19063					0.006014983804220719
HFPLLQDVP	9	Unmodified	_HFPLLQDVP_					0	0	0		ENSG00000179913|ENST00000318683|B3GNT3	ENSG00000179913|ENST00000318683|B3GNT3	ENSG00000179913|ENST00000318683|B3GNT3	MULTI-SECPEP	A375_MHC_IP_R2	2	532.7047119140625	2	533.290017	1064.56548	-0.73823	-0.00039369	-0.11525	-6.1463E-05	-0.85348	-0.00045515	533.2898436877617	77.925	0.66553	78.668	78.365	79.031	0.74293					27	12	3	0	0	0	0.4465	1	29586	29586		19.362	19.362	1	7519700			19454	8262	13991	14096	19064	19064					0.03578046822894976
HFPPATAG	8	Unmodified	_HFPPATAG_					0	0	0		ENST00000570301.5_1_17:79349894-79358751:-|nuORF;ENST00000574041.5_1_17:79353520-79359020:-|nuORF;ENST00000572077.5_1_17:79349894-79359036:-|nuORF;ENST00000572301.1_1_17:79353520-79359020:-|nuORF	ENST00000570301.5_1_17:79349894-79358751:-|nuORF	ENST00000570301.5_1_17:79349894-79358751:-|nuORF	MSMS	A375_MHC_IP_R1	1	399.130859375	2	399.20067	796.386788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.34	1	100.34	99.844	100.84	0								0	0	0	0.16876	1	36880	36880		2.8892	0.58649	1				19455	13603	13992	14097	19065	19065					-0.019549980253373178
HFRAKQKEEE	10	Unmodified	_HFRAKQKEEE_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	A375_MHC_IP_R2	2	434.9573974609375	3	434.558076	1300.6524	-0.71658	-0.0003114	-1.0536	-0.00045784	-1.7702	-0.00076924	434.55778822196123	25.769	0.50887	26.429	26.245	26.754	0.65992					17	9	3	0	0	0	0.72061	1	8671	8671		3.0723	3.0723	1	3846700			19456	6988	13993	14098	19066	19066					0.014098013067041393
HFRKHNEIPLR	11	Unmodified	_HFRKHNEIPLR_					0	0	0			REV__NAIP|p.D116N|1|0.07|ENSG00000249437|chr5:71012570-71012570|C/T|missense_variant	REV__NAIP|p.D116N|1|0.07|ENSG00000249437|chr5:71012570-71012570|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	723.8318481445312	2	723.907476	1445.8004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.12	1	104.12	103.62	104.62	0								0	0	0	0.16337	1	38234	38234		1.1933	0	1		+		19457	27081	13994	14099	19067	19067					0.09533157351165755
HFRKKRSE	8	Unmodified	_HFRKKRSE_					0	0	0		ENSG00000127362|ENST00000247879|TAS2R3	ENSG00000127362|ENST00000247879|TAS2R3	ENSG00000127362|ENST00000247879|TAS2R3	MULTI-MSMS	A375_MHC_IP_R2	2	544.70849609375	2	544.309606	1086.60466	-0.85486	-0.00046531	-1.1379	-0.00061936	-1.9927	-0.0010847	544.3088890627938	127.47	1.4724	127.74	127.51	128.98	0.26593					55	28	2	0	0	0	0.77717	2	49980	49980;50241		5.2307	1.2863	1	82256000			19458	4086	13995	14100	19068;19069	19068					0.06482191897134726
HFRNLLYMKL	10	Unmodified	_HFRNLLYMKL_					0	0	0			REV__ENST00000514454.1_1_3:139302176-139302278:-|nuORF	REV__ENST00000514454.1_1_3:139302176-139302278:-|nuORF	MSMS	A375_MHC_IP_R2	2	445.6150817871094	3	445.584909	1333.7329	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.59	1	22.21	21.71	22.71	0.61932								0	0	0	0.15464	1	6812	6812		5.7834	1.3773	1		+		19459	25651	13996	14101	19070	19070					0.0793799109601423
HFSPAVQGSFF	11	Unmodified	_HFSPAVQGSFF_					0	0	0		ENST00000440107.5_1_2:232063485-232070929:+|nuORF	ENST00000440107.5_1_2:232063485-232070929:+|nuORF	ENST00000440107.5_1_2:232063485-232070929:+|nuORF	MSMS	A375_MHC_IP_R2	2	408.61627197265625	3	408.532979	1222.57711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.724	1	37.495	36.995	37.995	0.7709								0	0	0	0.11439	1	13405	13405		20.871	9.2398	1				19460	11969	13997	14102	19071	19071					-0.025277561537677684
HFVFKVGNR	9	Unmodified	_HFVFKVGNR_					0	0	0		ENSG00000167699|ENST00000301329|GLOD4;nc|ENSG00000167699|Q9HC38|GLOD4;nc|ENSG00000167699|Q9HC38-3|GLOD4;ENST00000576239.5_1_17:674543-685513:-|nuORF	ENSG00000167699|ENST00000301329|GLOD4	ENSG00000167699|ENST00000301329|GLOD4	MULTI-MSMS	A375_MHC_IP_R1	1	368.9354553222656	3	368.541809	1102.6036	0.31559	0.00011631	1.5125	0.0005574	1.828	0.00067371	368.5424776671783	63.554	0.51237	63.554	63.274	63.786	0					12	9	2	0	0	0	0.74477	1	22976	22976		2.9952	0	1	806280			19461	7212	13998	14103	19072	19072					0.05639977528221607
HFVFKVGNR	9	Unmodified	_HFVFKVGNR_					0	0	0		ENSG00000167699|ENST00000301329|GLOD4;nc|ENSG00000167699|Q9HC38|GLOD4;nc|ENSG00000167699|Q9HC38-3|GLOD4;ENST00000576239.5_1_17:674543-685513:-|nuORF	ENSG00000167699|ENST00000301329|GLOD4	ENSG00000167699|ENST00000301329|GLOD4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	368.541809	1102.6036	0.31559	0.00011631	1.5125	0.0005574	1.828	0.00067371	368.5424776671783	63.554	0.51237	63.554	63.274	63.786	0	0	0	NaN	2.9952	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	806280			19462	7212	13998	14103							0.05639977528221607
HFVTLLRYG	9	Unmodified	_HFVTLLRYG_					0	0	0		nc|ENSG00000127252|Q9HDD0-2|PLAAT1;ENSG00000127252|ENST00000264735|PLAAT1	nc|ENSG00000127252|Q9HDD0-2|PLAAT1	nc|ENSG00000127252|Q9HDD0-2|PLAAT1	MSMS	A375_MHC_IP_R1	1	553.2234497070312	2	553.311284	1104.60801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.65	1	128.65	128.15	129.15	0								0	0	0	0.15486	1	49431	49431		11.64	0.81637	1				19463	14585	13999	14104	19073	19073					0.059894419511238084
HFVTLLRYG	9	Unmodified	_HFVTLLRYG_					0	0	0		nc|ENSG00000127252|Q9HDD0-2|PLAAT1;ENSG00000127252|ENST00000264735|PLAAT1	nc|ENSG00000127252|Q9HDD0-2|PLAAT1	nc|ENSG00000127252|Q9HDD0-2|PLAAT1	MULTI-MSMS	A375_MHC_IP_R2	2	552.7064208984375	2	553.311284	1104.60801	-0.82898	-0.00045869	-1.961	-0.001085	-2.79	-0.0015437	553.3104195032304	127.79	1.9277	128.05	127.16	129.09	0.26592					39	26	3	0	0	0	0.69317	1	50389	50389		11.64	0.81637	1	15732000			19464	14585	13999	14104	19074	19074					0.059894419511238084
HFVVVVCVLT	10	Unmodified	_HFVVVVCVLT_					0	0	0		ENST00000352732.9_1_15:89738905-89739064:+|nuORF	ENST00000352732.9_1_15:89738905-89739064:+|nuORF	ENST00000352732.9_1_15:89738905-89739064:+|nuORF	MSMS	A375_MHC_IP_R2	2	558.2124633789062	2	558.31772	1114.62089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.99	1	126.28	125.78	126.78	0.2951								0	0	0	0.15283	1	49243	49243		11.64	1.5664	1				19465	10932	14000	14105	19075	19075					0.06816137019018242
HFYSVKQM	8	Unmodified	_HFYSVKQM_					0	0	0			REV__nc|ENSG00000157837|Q8TCT6-3|SPPL3	REV__nc|ENSG00000157837|Q8TCT6-3|SPPL3	MULTI-SECPEP	A375_MHC_IP_R1	1	519.6677856445312	2	520.25512	1038.49569	-0.29103	-0.00015141	1.4551	0.00075704	1.1641	0.00060564	520.2560060271193	109.37	0.81451	109.37	108.97	109.78	0					29	15	3	0	0	0	0.93661	1	40057	40057		21.747	9.506	1	2931400	+		19466	20048	14001	14106	19076	19076					-0.022021551173565967
HGAGLFIR	8	Unmodified	_HGAGLFIR_					0	0	0		ENST00000419769.6_1_10:127452041-127452143:+|nuORF	ENST00000419769.6_1_10:127452041-127452143:+|nuORF	ENST00000419769.6_1_10:127452041-127452143:+|nuORF	MSMS	A375_MHC_IP_R2	2	435.651123046875	2	435.750862	869.487171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.73	1	102.5	102	103	0.76428								0	0	0	0.16876	1	38560	38560		2.5775	0	1				19467	11718	14002	14107	19077	19077					0.047206590283281
HGAIVRPKKG	10	Unmodified	_HGAIVRPKKG_					0	0	0			REV__ENST00000508165.1_1_4:135249290-135249890:+|nuORF	REV__ENST00000508165.1_1_4:135249290-135249890:+|nuORF	MSMS	A375_MHC_IP_R2	2	354.922119140625	3	354.889209	1061.6458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.718	1	49.476	48.976	49.976	0.75737								0	0	0	0.1562	1	18295	18295		0.69767	0.23933	1		+		19468	25576	14003	14108	19078	19078					0.11743952936603819
HGCAHMCG	8	Unmodified	_HGCAHMCG_					0	0	0			REV__tr|U7SSR1|U7SSR1_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01459PE=4SV=1	REV__tr|U7SSR1|U7SSR1_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01459PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	815.6766967773438	1	815.27456	814.267283	-0.74627	-0.00060842	1.4583	0.0011889	0.71202	0.00058049	815.2757635458638	144.99	0.41855	144.99	144.72	145.14	0					13	8	2	0	0	0	0.77861	1	55538	55538		0	0	1	4840100	+		19469	28444	14004	14109	19079	19079					-0.147279742375531
HGCAHMCG	8	Unmodified	_HGCAHMCG_					0	0	0			REV__tr|U7SSR1|U7SSR1_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01459PE=4SV=1	REV__tr|U7SSR1|U7SSR1_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01459PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	815.27456	814.267283	-0.65516	-0.00053414	1.4231	0.0011603	0.76798	0.00062611	815.2755191429559	145.02	0.44759	145.04	144.76	145.21	0.021408	0.021485	-3.2647E-06	NaN	0	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4703600	+		19470	28444	14004	14109							-0.147279742375531
HGCCGCCND	9	Unmodified	_HGCCGCCND_					0	0	0			REV__TM4SF1|p.D74N|1|0.19|ENSG00000169908|chr3:149375727-149375727|C/T|missense_variant	REV__TM4SF1|p.D74N|1|0.19|ENSG00000169908|chr3:149375727-149375727|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	456.1839904785156	2	456.116783	910.219012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.3	1	109.3	108.8	109.8	0								0	0	0	0.15486	1	40091	40091		0	0	1		+		19471	28124	14005	14110	19080	19080					-0.23968835939774635
HGCRVYVW	8	Unmodified	_HGCRVYVW_					0	0	0			REV__ENST00000528752.1_1_11:66241221-66243635:+|nuORF	REV__ENST00000528752.1_1_11:66241221-66243635:+|nuORF	MSMS	A375_MHC_IP_R1	1	510.2036437988281	2	510.247629	1018.48071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.15	1	115.15	114.65	115.65	0								0	0	0	0.16876	1	42227	42227		5.7604	1.0044	1		+		19472	21289	14006	14111	19081	19081					-0.027796021946983274
HGCSIALC	8	Unmodified	_HGCSIALC_					0	0	0			REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	MSMS	A375_MHC_IP_R2	2	402.15277099609375	2	402.180566	802.346579	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.04	1	128.3	127.8	128.8	0.26593								0	0	0	0.16876	1	50261	50261		0.79363	0	1		+		19473	15922	14007	14112	19082	19082					-0.0625000401178113
HGDGDFDA	8	Unmodified	_HGDGDFDA_					0	0	0			REV__ENSG00000129636|ENST00000320640|ITFG1	REV__ENSG00000129636|ENST00000320640|ITFG1	MULTI-SECPEP	A375_MHC_IP_R2	2	832.70166015625	1	833.306037	832.298761	-0.56709	-0.00047256	-0.15164	-0.00012636	-0.71873	-0.00059892	833.3059271557	144.85	0.18265	144.87	144.76	144.94	0.021408					5	3	2	0	0	0	0.972	1	56573	56573		0	0	1	1237100	+		19474	18500	14008	14113	19083	19083					-0.1240966340661771
HGDMPFNVL	9	Oxidation (M)	_HGDM(Oxidation (M))PFNVL_		HGDM(1)PFNVL		HGDM(42)PFNVL	0	0	1			REV__ENSG00000145863|ENST00000274545|GABRA6	REV__ENSG00000145863|ENST00000274545|GABRA6	MULTI-MSMS	A375_MHC_IP_R1	1	523.6430053710938	2	523.242209	1044.46987	-0.51167	-0.00026773	0.67421	0.00035278	0.16254	8.505E-05	523.7438010347767	55.137	0.71138	55.137	54.771	55.482	0					34	13	4	0	0	0	0.1478	1	19689	19689		42.095	6.0504	1	5349000	+		19475	19498	14009	14114	19084	19084		480			-0.05059049359647361
HGDMPFNVL	9	Oxidation (M)	_HGDM(Oxidation (M))PFNVL_					0	0	1			REV__ENSG00000145863|ENST00000274545|GABRA6	REV__ENSG00000145863|ENST00000274545|GABRA6	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	523.242209	1044.46987	-0.51167	-0.00026773	0.67421	0.00035278	0.16254	8.505E-05	523.7438010347767	55.137	0.71138	55.137	54.771	55.482	0	-0.045421	-0.00022417	NaN	42.095	34	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5349000	+		19476	19498	14009	14114				480			-0.05059049359647361
HGDMVDLHLY	10	Unmodified	_HGDMVDLHLY_					0	0	0			REV__ENST00000429921.5_1_2:210867355-210880705:+|nuORF	REV__ENST00000429921.5_1_2:210867355-210880705:+|nuORF	MSMS	A375_MHC_IP_R1	1	600.214599609375	2	600.279323	1198.54409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.102	1	51.102	50.602	51.602	0								0	0	0	0.15256	1	18127	18127		12.532	1.7076	1		+		19477	22309	14010	14115	19085	19085					-0.04723706268100614
HGDMVDLHLY	10	Unmodified	_HGDMVDLHLY_					0	0	0			REV__ENST00000429921.5_1_2:210867355-210880705:+|nuORF	REV__ENST00000429921.5_1_2:210867355-210880705:+|nuORF	MSMS	A375_MHC_IP_R2	2	600.2142944335938	2	600.279323	1198.54409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.278	1	51.032	50.532	51.532	0.75406								0	0	0	0.15256	1	18909	18909		12.532	1.7076	1		+		19478	22309	14010	14115	19086	19086					-0.04723706268100614
HGDSLLYY	8	Unmodified	_HGDSLLYY_					0	0	0			REV__ENSG00000158428|ENST00000289388|CATIP	REV__ENSG00000158428|ENST00000289388|CATIP	MULTI-MSMS	A375_MHC_IP_R2	2	484.7001647949219	2	484.229625	966.444697	-1.0365	-0.00050189	-0.012043	-5.8316E-06	-1.0485	-0.00050772	484.22966050450094	53.78	0.4111	54.531	54.301	54.712	0.75105					13	7	2	0	0	0	0.7338	1	20311	20311		24.674	1.5255	1	2177800	+		19479	20075	14011	14116	19087	19087					-0.03986780890568298
HGFGGGGG	8	Unmodified	_HGFGGGGG_					0	0	0		ENST00000529308.5_2_11:77925304-77925502:+|nuORF	ENST00000529308.5_2_11:77925304-77925502:+|nuORF	ENST00000529308.5_2_11:77925304-77925502:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	646.2110595703125	1	645.273949	644.266673	-0.58863	-0.00037982	0.66455	0.00042882	0.075923	4.8991E-05	645.2745802377938	94.747	0.2027	94.747	94.599	94.802	0					5	3	2	0	0	0	0.77861	1	34784	34784		0	0	1	560800			19480	13127	14012	14117	19088	19088					-0.06968986299091284
HGGARKPG	8	Unmodified	_HGGARKPG_					0	0	0		ENST00000341116.7_1_22:37415816-37419821:+|nuORF	ENST00000341116.7_1_22:37415816-37419821:+|nuORF	ENST00000341116.7_1_22:37415816-37419821:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	390.61749267578125	2	390.217186	778.419819	0.18383	7.1732E-05	0.16177	6.3127E-05	0.3456	0.00013486	390.2171871920175	99.108	3.3961	99.108	97.036	100.43	0					143	66	3	0	0	0	0.972	1	36592	36592		2.3027	0	1	12030000			19481	10864	14013	14118	19089	19089					0.021746288173858375
HGGARKPG	8	Unmodified	_HGGARKPG_					0	0	0		ENST00000341116.7_1_22:37415816-37419821:+|nuORF	ENST00000341116.7_1_22:37415816-37419821:+|nuORF	ENST00000341116.7_1_22:37415816-37419821:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	390.217186	778.419819	-0.14704	-5.7376E-05	0.48404	0.00018888	0.33701	0.00013151	390.2173078460435	98.56	3.2496	99.32	97.322	100.57	0.75977	0.10602	0.00011952	NaN	2.3027	124	63	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12403000			19482	10864	14013	14118							0.021746288173858375
HGGGAPCG	8	Unmodified	_HGGGAPCG_					0	0	0			REV__ENST00000315520.9_1_12:50367174-50369543:+|nuORF	REV__ENST00000315520.9_1_12:50367174-50369543:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	655.4313354492188	1	655.26167	654.254394	-0.39254	-0.00025722	-1.5448	-0.0010123	-1.9374	-0.0012695	655.2598245768991	98.181	0.30145	98.181	98.05	98.352	0					6	5	2	0	0	0	0.972	1	36119	36119		0.79363	0	1	1042300	+		19483	23534	14014	14119	19090	19090					-0.08656346033785667
HGGGGGGA	8	Unmodified	_HGGGGGGA_					0	0	0		ENSG00000198914|ENST00000361360|POU3F3	ENSG00000198914|ENST00000361360|POU3F3	ENSG00000198914|ENST00000361360|POU3F3	MULTI-MSMS	A375_MHC_IP_R2	2	569.2088623046875	1	569.242649	568.235373	-0.26085	-0.00014849	1.9183	0.001092	1.6575	0.00094351	569.2449531568816	109.09	0.25661	109.84	109.62	109.88	0.74683					6	4	2	0	0	0	0.77861	1	41185	41185		0	0	1	711930			19484	9368	14015	14120	19091	19091					-0.0660155933318265
HGGGGGGG	8	Unmodified	_HGGGGGGG_					0	0	0		ENSG00000104824|ENST00000221419|HNRNPL;ENSG00000152784|ENST00000415738|PRDM8;ENSG00000101331|ENST00000452892|CCM2L;nc|ENSG00000101331|Q9NUG4-2|CCM2L;nc|ENSG00000152784|Q9NQV8-2|PRDM8;ENST00000601673.1_7:6523004-6523760:+|nuORF;ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;ENSG00000103241|ENST00000262426|FOXF1;ENSG00000178691|ENST00000322652|SUZ12;ENSG00000054598|ENST00000645831|FOXC1;ENSG00000124766|ENST00000244745|SOX4;ENSG00000183783|ENST00000360029|KCTD8	ENSG00000104824|ENST00000221419|HNRNPL;ENST00000492220.1_1_1:150381497-150445807:+|nuORF;REV__nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000178691|ENST00000322652|SUZ12;ENSG00000054598|ENST00000645831|FOXC1;ENSG00000124766|ENST00000244745|SOX4;ENSG00000183783|ENST00000360029|KCTD8	ENSG00000104824|ENST00000221419|HNRNPL	MULTI-SECPEP	A375_MHC_IP_R2	2	555.7366943359375	1	555.226999	554.219723	-0.58392	-0.00032421	0.11575	6.4268E-05	-0.46817	-0.00025994	555.2312280906777	142.88	0.75954	142.92	142.58	143.34	0.030731					22	14	2	0	0	0	0.972	1	55862	55862		0	0	1	1401600			19485	2539;21084;6633;8172;1261;3926;8529	14016	14121	19092	19092					-0.07521845850237696
HGGGGGGGSS	10	Unmodified	_HGGGGGGGSS_					0	0	0		ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	MULTI-SECPEP	A375_MHC_IP_R2	2	728.712158203125	1	729.291056	728.283779	-0.61255	-0.00044672	-0.47811	-0.00034868	-1.0907	-0.00079541	729.2906433946881	144.32	0.53014	144.35	143.84	144.37	0.024414					16	10	2	0	0	0	0.95034	1	56234	56234		0.40072	0	1	1011900			19486	3926	14017	14122	19093	19093					-0.09123110483949404
HGHGGAGG	8	Unmodified	_HGHGGAGG_					0	0	0		nc|ENSG00000163795|Q8N8E2-3|ZNF513;nc|ENSG00000163795|Q8N8E2-2|ZNF513;ENSG00000163795|ENST00000323703|ZNF513	nc|ENSG00000163795|Q8N8E2-3|ZNF513	nc|ENSG00000163795|Q8N8E2-3|ZNF513	MULTI-SECPEP	A375_MHC_IP_R1	1	649.789306640625	1	649.280097	648.272821	-0.69619	-0.00045202	0.71033	0.0004612	0.01414	9.1811E-06	649.2794329052145	144.3	0.66026	144.3	143.89	144.55	0					25	16	2	0	0	0	0.972	1	55315	55315		0.79363	0	1	611400			19487	6721	14018	14123	19094	19094					-0.06538468067560643
HGILIKKQL	9	Unmodified	_HGILIKKQL_					0	0	0		nc|ENSG00000137968|Q8NCS7|SLC44A5	nc|ENSG00000137968|Q8NCS7|SLC44A5	nc|ENSG00000137968|Q8NCS7|SLC44A5	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6678466796875	2	525.345126	1048.6757	-0.68762	-0.00036124	0.059616	3.1319E-05	-0.628	-0.00032992	525.3452435341243	39.618	0.35295	39.618	39.441	39.794	0					11	6	2	0	0	0	0.71541	1	13560	13560		7.2892	2.96	1	2285800			19488	14630	14019	14124	19095	19095					0.15330891881944808
HGILIKKQL	9	Unmodified	_HGILIKKQL_					0	0	0		nc|ENSG00000137968|Q8NCS7|SLC44A5	nc|ENSG00000137968|Q8NCS7|SLC44A5	nc|ENSG00000137968|Q8NCS7|SLC44A5	MULTI-SECPEP	A375_MHC_IP_R2	2	525.1693725585938	2	525.345126	1048.6757	-0.81304	-0.00042713	-0.20985	-0.00011024	-1.0229	-0.00053737	525.3450053607276	38.701	0.40785	39.475	39.2	39.607	0.77451					11	7	2	0	0	0	0.71541	1	14300	14300		11.64	1.5664	1	1580000			19489	14630	14019	14124	19096	19096					0.15330891881944808
HGKDGKIFVW	10	Unmodified	_HGKDGKIFVW_					0	0	0		ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN;ENST00000373807.5_1_9:124074589-124093809:+|nuORF;CON__Q3SX14;ENST00000485767.1_1_9:124076097-124079531:+|nuORF	ENSG00000148180|ENST00000432226|GSN	ENSG00000148180|ENST00000432226|GSN	MULTI-MSMS	A375_MHC_IP_R1	1	396.6173400878906	3	396.217102	1185.62948	0.31264	0.00012387	-0.058794	-2.3295E-05	0.25384	0.00010058	396.2170307749804	48.434	0.60766	48.434	48.173	48.78	0					17	11	2	0	0	0	0.69695	1	17099	17099		8.7518	2.8836	1	3091000		+	19490	5721	14020	14125	19097	19097					0.04408826979852165
HGKDGKIFVW	10	Unmodified	_HGKDGKIFVW_					0	0	0		ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN;ENST00000373807.5_1_9:124074589-124093809:+|nuORF;CON__Q3SX14;ENST00000485767.1_1_9:124076097-124079531:+|nuORF	ENSG00000148180|ENST00000432226|GSN	ENSG00000148180|ENST00000432226|GSN	MULTI-MSMS	A375_MHC_IP_R2	2	396.6173400878906	3	396.217102	1185.62948	0.048144	1.9075E-05	0.30055	0.00011908	0.3487	0.00013816	396.21716461041257	47.347	0.56141	48.108	47.919	48.48	0.76128					17	10	3	0	0	0	0.15934	1	17770	17770		39.923	21.202	1	4737000		+	19491	5721	14020	14125	19098	19098					0.04408826979852165
HGKLLWAQSF	10	Unmodified	_HGKLLWAQSF_					0	0	0			REV__ZNF536|p.F359L|2|0.29|ENSG00000198597|chr19:30444637-30444637|T/C|missense_variant	REV__ZNF536|p.F359L|2|0.29|ENSG00000198597|chr19:30444637-30444637|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	395.9453430175781	3	396.217102	1185.62948	0.0087377	3.462E-06	-1.2402	-0.0004914	-1.2315	-0.00048794	396.55197070282674	40.676	0.60823	40.676	40.355	40.963	0					16	11	3	0	0	0	0.89761	1	13884	13884		7.4771	0	1	2006600	+		19492	29046	14021	14126	19099	19099					0.04408826979829428
HGKPVTQVTW	10	Unmodified	_HGKPVTQVTW_					0	0	0		nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	MULTI-SECPEP	A375_MHC_IP_R1	1	577.2115478515625	2	576.811648	1151.60874	-0.15414	-8.8911E-05	0.0029762	1.7167E-06	-0.15117	-8.7195E-05	576.8113934272269	33.47	0.40701	33.47	33.241	33.648	0					12	7	2	0	0	0	0.91328	1	10967	10967		17.443	7.3687	1	2831600			19493	9937	14022	14127	19100	19100					0.03900236600179596
HGKPVTQVTW	10	Unmodified	_HGKPVTQVTW_					0	0	0		nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	MULTI-MATCH	A375_MHC_IP_R2	2		2	576.811648	1151.60874	-0.21944	-0.00012658	0.21298	0.00012285	-0.0064633	-3.7281E-06	577.3128591297473	32.644	0.4068	33.381	33.162	33.569	0.73692	-0.044514	0.00015888	NaN	12.873	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3338000			19494	9937	14022	14127							0.03900236600179596
HGLENLKFLQA	11	Unmodified	_HGLENLKFLQA_					0	0	0		SLITRK6|p.E139K|1|0.38|ENSG00000184564|chr13:85796094-85796094|C/T|missense_variant	SLITRK6|p.E139K|1|0.38|ENSG00000184564|chr13:85796094-85796094|C/T|missense_variant	SLITRK6|p.E139K|1|0.38|ENSG00000184564|chr13:85796094-85796094|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	424.30322265625	3	423.903183	1268.68772	0.034589	1.4662E-05	0.22055	9.3493E-05	0.25514	0.00010816	423.90321354862647	68.885	0.60786	68.885	68.565	69.173	0					28	11	4	0	0	0	0.66366	1	24962	24962		14.838	6.0861	1	3499700			19495	29208	14023	14128	19101	19101					0.06412463834476512
HGLENLKFLQA	11	Unmodified	_HGLENLKFLQA_					0	0	0		SLITRK6|p.E139K|1|0.38|ENSG00000184564|chr13:85796094-85796094|C/T|missense_variant	SLITRK6|p.E139K|1|0.38|ENSG00000184564|chr13:85796094-85796094|C/T|missense_variant	SLITRK6|p.E139K|1|0.38|ENSG00000184564|chr13:85796094-85796094|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	424.30303955078125	3	423.903183	1268.68772	-0.062473	-2.6483E-05	0.029751	1.2611E-05	-0.032722	-1.3871E-05	423.90307457881045	67.996	0.71178	68.731	68.358	69.07	0.73511					29	13	3	0	0	0	0.59391	1	25744	25744		19.144	7.5126	1	3335300			19496	29208	14023	14128	19102	19102					0.06412463834476512
HGLGDTGHSW	10	Unmodified	_HGLGDTGHSW_					0	0	0		ENSG00000011009|ENST00000374514|LYPLA2;ENST00000495365.5_1_1:24119163-24120565:+|nuORF	ENSG00000011009|ENST00000374514|LYPLA2	ENSG00000011009|ENST00000374514|LYPLA2	MULTI-SECPEP	A375_MHC_IP_R2	2	534.13818359375	2	533.73868	1065.46281	-1.1511	-0.0006144	0.23798	0.00012702	-0.91314	-0.00048738	533.7387971584242	28.373	0.25424	29.052	28.909	29.163	0.67857					6	4	2	0	0	0	0.64716	1	9825	9825		17.113	2.5312	1	2661400			19497	989	14024	14129	19103	19103					-0.06730645915877176
HGPVPKGYTY	10	Unmodified	_HGPVPKGYTY_					0	0	0			REV__ENSG00000175899|ENST00000318602|A2M	REV__ENSG00000175899|ENST00000318602|A2M	MULTI-SECPEP	A375_MHC_IP_R1	1	559.708740234375	2	559.785099	1117.55564	-0.51634	-0.00028904	-3.1094	-0.0017406	-3.6257	-0.0020296	559.7833927534831	25.406	0.25612	25.406	25.255	25.511	0					7	4	2	0	0	0	0.88361	1	7363	7363		13.042	2.2185	1	1190100	+		19498	21373	14025	14130	19104	19104					0.0015685881753597641
HGQNNCYQL	9	Unmodified	_HGQNNCYQL_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	A375_MHC_IP_R1	1	359.8913879394531	3	359.490786	1075.45053	0.22999	8.268E-05	0.26284	9.4487E-05	0.49283	0.00017717	359.49126237927703	105.61	1.2745	105.61	105.2	106.47	0					63	24	3	0	0	0	0.75032	1	38895	38895		2.4985	0	1	11365000			19499	10030	14026	14131	19105	19105					-0.0841800565056019
HGQQKMKTLIQ	11	Unmodified	_HGQQKMKTLIQ_					0	0	0			REV__ENST00000586479.1_1_19:11464096-11464249:+|nuORF	REV__ENST00000586479.1_1_19:11464096-11464249:+|nuORF	MSMS	A375_MHC_IP_R2	2	656.0639038085938	2	656.363721	1310.71289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.885	1	88.617	88.117	89.117	0.7318								0	0	0	0.16191	1	33436	33436		8.7454	0.58988	1		+		19500	26389	14027	14132	19106	19106					0.06996195365400126
HGRVIFILFYR	11	Unmodified	_HGRVIFILFYR_					0	0	0		chr11:89288262-89295143|122|283.47|0.0|24.76|+|1|TE_info:MIRc,MIRc_dup68339,MIR,SINE,donor,-,89288195,89288262|None,TYR|3	chr11:89288262-89295143|122|283.47|0.0|24.76|+|1|TE_info:MIRc,MIRc_dup68339,MIR,SINE,donor,-,89288195,89288262|None,TYR|3	chr11:89288262-89295143|122|283.47|0.0|24.76|+|1|TE_info:MIRc,MIRc_dup68339,MIR,SINE,donor,-,89288195,89288262|None,TYR|3	MSMS	A375_MHC_IP_R1	1	710.9151000976562	2	710.914239	1419.81392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.84	1	144.84	144.34	145.34	0								0	0	0	0.16337	1	55535	55535		1.1933	0	1				19501	404	14028	14133	19107	19107					0.1208101513038855
HGSDGAKRKI	10	Unmodified	_HGSDGAKRKI_					0	0	0			REV__nc|ENSG00000154258|Q8IUA7-4|ABCA9	REV__nc|ENSG00000154258|Q8IUA7-4|ABCA9	MSMS	A375_MHC_IP_R1	1	534.737548828125	2	534.799072	1067.58359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.291	1	45.291	44.791	45.791	0								0	0	0	0.15502	1	15842	15842		4.5289	0.93237	1		+		19502	27297	14029	14134	19108	19108					0.05250181797600817
HGSIFWIQP	9	Unmodified	_HGSIFWIQP_					0	0	0		ENST00000430320.3_1_1:31302723-31306574:+|nuORF;ENST00000438790.1_1_1:31297649-31306574:+|nuORF	ENST00000430320.3_1_1:31302723-31306574:+|nuORF	ENST00000430320.3_1_1:31302723-31306574:+|nuORF	MSMS	A375_MHC_IP_R1	1	542.69482421875	2	542.782359	1083.55016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.054	1	83.054	82.554	83.554	0								0	0	0	0.15438	1	30383	30383		20.454	2.3186	1				19503	11854	14030	14135	19109	19109					0.01173180025716647
HGSSYSASK	9	Unmodified	_HGSSYSASK_					0	0	0			REV__ENSG00000134817|ENST00000606794|APLNR	REV__ENSG00000134817|ENST00000606794|APLNR	MULTI-MSMS	A375_MHC_IP_R1	1	462.6141662597656	2	462.214506	922.414459	-0.33117	-0.00015307	-0.18196	-8.4103E-05	-0.51313	-0.00023718	462.21435102439557	65.231	0.66202	65.231	64.903	65.565	0					24	12	3	0	0	0	0.68216	1	23613	23613		8.5933	0	1	3021300	+		19504	18804	14031	14136	19110	19110					-0.04985139555765272
HGSSYSASK	9	Unmodified	_HGSSYSASK_					0	0	0			REV__ENSG00000134817|ENST00000606794|APLNR	REV__ENSG00000134817|ENST00000606794|APLNR	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	462.214506	922.414459	-0.43913	-0.00020297	-0.43014	-0.00019882	-0.86927	-0.00040179	462.21419761835494	64.473	0.56129	65.213	64.902	65.463	0.74022	-0.0087892	-0.0001053	NaN	8.5933	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2492300	+		19505	18804	14031	14136							-0.04985139555765272
HGVFLPLV	8	Unmodified	_HGVFLPLV_					0	0	0		ENST00000556993.1_1_14:70125309-70170323:+|nuORF;ENSG00000100647|ENST00000342745|SUSD6	ENST00000556993.1_1_14:70125309-70170323:+|nuORF	ENST00000556993.1_1_14:70125309-70170323:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	441.666015625	2	441.265813	880.517074	0.065071	2.8714E-05	0.13683	6.0378E-05	0.2019	8.9092E-05	441.26581147246196	106.11	1.1235	106.11	105.86	106.98	0					41	21	3	0	0	0	0.41926	1	38951	38951		52.334	19.881	1	4414100			19506	2207	14032	14137	19111	19111					0.07203597973648357
HGVFLPLV	8	Unmodified	_HGVFLPLV_					0	0	0		ENST00000556993.1_1_14:70125309-70170323:+|nuORF;ENSG00000100647|ENST00000342745|SUSD6	ENST00000556993.1_1_14:70125309-70170323:+|nuORF	ENST00000556993.1_1_14:70125309-70170323:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	441.6654357910156	2	441.265813	880.517074	-0.28995	-0.00012795	0.22431	9.8979E-05	-0.065643	-2.8966E-05	441.26579358580665	105.06	1.0174	105.82	105.51	106.53	0.76308					36	19	3	0	0	0	0.41926	1	39715	39715		52.334	19.881	1	5036800			19507	2207	14032	14137	19112	19112					0.07203597973648357
HHADNMQKMFY	11	Unmodified	_HHADNMQKMFY_					0	0	0			REV__ENSG00000121879|ENST00000263967|PIK3CA	REV__ENSG00000121879|ENST00000263967|PIK3CA	MULTI-MSMS	A375_MHC_IP_R2	2	711.706787109375	2	711.308089	1420.60162	-1.2738	-0.00090604	-0.028507	-2.0277E-05	-1.3023	-0.00092632	711.3079791366499	33.664	0.50628	34.417	34.196	34.702	0.75225					28	9	4	0	0	0	0.63737	1	12066	12066		20.415	3.3016	1	12892000	+		19508	18174	14033	14138	19113	19113					-0.09185187334196598
HHCCCCPCCH	10	Unmodified	_HHCCCCPCCH_					0	0	0		ENSG00000197191|ENST00000650725|CYSRT1	ENSG00000197191|ENST00000650725|CYSRT1	ENSG00000197191|ENST00000650725|CYSRT1	MSMS	A375_MHC_IP_R1	1	573.1903686523438	2	573.154862	1144.29517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.448	1	73.448	72.948	73.948	0								0	0	0	0.15642	1	26743	26743		0	0	1				19509	9129	14034	14139	19114	19114					-0.27120478635652034
HHCCCCPCCH	10	Unmodified	_HHCCCCPCCH_					0	0	0		ENSG00000197191|ENST00000650725|CYSRT1	ENSG00000197191|ENST00000650725|CYSRT1	ENSG00000197191|ENST00000650725|CYSRT1	MSMS	A375_MHC_IP_R1	1	573.1859741210938	2	573.154862	1144.29517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.693	1	92.693	92.193	93.193	0								0	0	0	0.15642	1	34069	34069		0	0	1				19510	9129	14034	14139	19115	19115					-0.27120478635652034
HHDSLYPLT	9	Unmodified	_HHDSLYPLT_					0	0	0		nc|ENSG00000152457|Q96SD1-4|DCLRE1C	nc|ENSG00000152457|Q96SD1-4|DCLRE1C	nc|ENSG00000152457|Q96SD1-4|DCLRE1C	MULTI-MSMS	A375_MHC_IP_R1	1	361.91375732421875	3	361.513696	1081.51926	0.28001	0.00010123	0.14231	5.1448E-05	0.42232	0.00015267	361.51362832296076	47.699	0.40335	47.699	47.517	47.92	0					19	7	3	0	0	0	0.63811	1	16795	16795		8.1555	3.2585	1	4752000			19511	14685	14035	14140	19116	19116					-0.018240180792190586
HHDSLYPLT	9	Unmodified	_HHDSLYPLT_					0	0	0		nc|ENSG00000152457|Q96SD1-4|DCLRE1C	nc|ENSG00000152457|Q96SD1-4|DCLRE1C	nc|ENSG00000152457|Q96SD1-4|DCLRE1C	MULTI-MSMS	A375_MHC_IP_R2	2	361.9134521484375	3	361.513696	1081.51926	-0.0062554	-2.2614E-06	0.20891	7.5523E-05	0.20265	7.3262E-05	361.51364494150636	46.82	0.50881	47.581	47.206	47.715	0.76128					20	9	4	0	0	0	0.43185	1	17533	17533		16.149	5.3496	1	5116800			19512	14685	14035	14140	19117	19117					-0.018240180792190586
HHFFSWQI	8	Unmodified	_HHFFSWQI_					0	0	0		ENST00000447904.5_1_7:131011916-131012072:-|nuORF	ENST00000447904.5_1_7:131011916-131012072:-|nuORF	ENST00000447904.5_1_7:131011916-131012072:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	551.6671752929688	2	551.266876	1100.5192	-0.83646	-0.00046111	1.7939	0.00098895	0.95749	0.00052783	551.2676640520332	128.92	0.30411	129.16	128.96	129.26	0.23946					8	5	3	0	0	0	0.77488	1	50696	50696		13.508	4.9146	1	4123700			19513	12047	14036	14141	19118	19118					-0.02703973288544148
HHFFSWQI	8	Unmodified	_HHFFSWQI_					0	0	0		ENST00000447904.5_1_7:131011916-131012072:-|nuORF	ENST00000447904.5_1_7:131011916-131012072:-|nuORF	ENST00000447904.5_1_7:131011916-131012072:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	551.266876	1100.5192	-0.63535	-0.00035025	1.4278	0.00078708	0.79242	0.00043683	551.2675217243924	129.13	0.25548	129.13	128.99	129.25	0	-0.016914	-0.00025442	NaN	13.508	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6410900			19514	12047	14036	14141							-0.02703973288544148
HHFHNPHFRRD	11	Unmodified	_HHFHNPHFRRD_					0	0	0		ENSG00000176160|ENST00000323777|HSF5	ENSG00000176160|ENST00000323777|HSF5	ENSG00000176160|ENST00000323777|HSF5	MSMS	A375_MHC_IP_R2	2	500.4751892089844	3	500.576575	1498.7079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.1646	1	3.6005	3.1005	4.1005	0.43585								0	0	0	0.16355	1	1026	1026		0.073264	0	1				19515	8006	14037	14142	19119	19119					-0.021509276623646656
HHFYDFERDAY	11	Unmodified	_HHFYDFERDAY_					0	0	0		ENSG00000115904|ENST00000402219|SOS1	ENSG00000115904|ENST00000402219|SOS1	ENSG00000115904|ENST00000402219|SOS1	MSMS	A375_MHC_IP_R1	1	500.6243896484375	3	500.549469	1498.62658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.727	1	60.727	60.227	61.227	0								0	0	0	0.16172	1	21868	21868		9.7643	6.921	1				19516	3349	14038	14143	19120	19120					-0.10279092935616063
HHHEDVDML	9	Unmodified	_HHHEDVDML_					0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	MSMS	A375_MHC_IP_R1	1	378.1462097167969	3	378.16619	1131.47674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.53	1	109.53	109.03	110.03	0								0	0	0	0.15486	1	40172	40172		1.0715	0	1		+		19517	21936	14039	14144	19121	19121					-0.08373736479074978
HHHEDVDML	9	Unmodified	_HHHEDVDML_					0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	MSMS	A375_MHC_IP_R2	2	378.15399169921875	3	378.16619	1131.47674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.03	1	104.79	104.29	105.29	0.76308								0	0	0	0.15486	1	39371	39371		1.0715	0	1		+		19518	21936	14039	14144	19122	19122					-0.08373736479074978
HHHEDVDMLT	10	Unmodified	_HHHEDVDMLT_					0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	MSMS	A375_MHC_IP_R2	2	412.2480163574219	3	411.84875	1232.52442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.354	1	14.927	14.427	15.427	0.573								0	0	0	0.15628	1	4344	4344		0.15932	0.01943	1		+		19519	21936	14040	14145	19123	19123					-0.0825408227888147
HHHHRRRRHRE	11	Unmodified	_HHHHRRRRHRE_					0	0	0		ENSG00000166546|ENST00000536005|BEAN1	ENSG00000166546|ENST00000536005|BEAN1	ENSG00000166546|ENST00000536005|BEAN1	MSMS	A375_MHC_IP_R1	1	807.833984375	2	807.433913	1612.85327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.55	1	144.55	144.05	145.05	0								0	0	0	0.1636	1	55432	55432		0	0	1				19520	7088	14041	14146	19124	19124					0.07135972977198435
HHHYGSHSSW	10	Unmodified	_HHHYGSHSSW_					0	0	0		KCNG4|p.P22S|2|0.28|ENSG00000168418|chr16:84237422-84237422|G/A|missense_variant	KCNG4|p.P22S|2|0.28|ENSG00000168418|chr16:84237422-84237422|G/A|missense_variant	KCNG4|p.P22S|2|0.28|ENSG00000168418|chr16:84237422-84237422|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	412.24835205078125	3	412.176077	1233.5064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.994	1	15.582	15.082	16.082	0.58774								0	0	0	0.15628	1	4507	4507		0.15932	0.075971	1				19521	14196	14042	14147	19125	19125					-0.10101036418723197
HHLGVLIFHS	10	Unmodified	_HHLGVLIFHS_					0	0	0			REV__ENSG00000198674|ENST00000307002|OR10G6	REV__ENSG00000198674|ENST00000307002|OR10G6	MSMS	A375_MHC_IP_R2	2	580.2489013671875	2	580.322183	1158.62981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.11	1	145.13	144.63	145.63	0.021408								0	0	0	0.15585	1	56663	56663		1.8442	0.19162	1		+		19522	22394	14043	14148	19126	19126					0.056842466997068186
HHLQTVLFW	9	Unmodified	_HHLQTVLFW_					0	0	0		ENSG00000173212|ENST00000369500|MAB21L3	ENSG00000173212|ENST00000369500|MAB21L3	ENSG00000173212|ENST00000369500|MAB21L3	MULTI-SECPEP	A375_MHC_IP_R1	1	394.9222412109375	3	394.213581	1179.61891	0.11323	4.4638E-05	2.0817	0.00082065	2.195	0.00086529	394.21473715490254	40.524	0.45759	40.524	40.355	40.813	0					9	8	2	0	0	0	0.74412	1	13971	13971		6.6304	6.1244	1	541390			19523	7777	14044	14149	19127	19127					0.036288443253852165
HHLTDVPLDL	10	Unmodified	_HHLTDVPLDL_					0	0	0			REV__ENSG00000172578|ENST00000341319|KLHL6	REV__ENSG00000172578|ENST00000341319|KLHL6	MULTI-SECPEP	A375_MHC_IP_R1	1	387.4452209472656	3	387.208384	1158.60332	-0.12219	-4.7311E-05	1.3293	0.00051472	1.2071	0.00046741	387.20879696496877	41.578	0.3578	41.578	41.368	41.725	0					15	6	3	0	0	0	0.92832	1	14304	14304		8.4443	4.0382	1	1560200	+		19524	21158	14045	14150	19128	19128					0.030365130177187893
HHMPVLRLK	9	Unmodified	_HHMPVLRLK_					0	0	0		MROH2B|p.Q1062L|1|0.38|ENSG00000171495|chr5:41010030-41010030|T/A|missense_variant	MROH2B|p.Q1062L|1|0.38|ENSG00000171495|chr5:41010030-41010030|T/A|missense_variant	MROH2B|p.Q1062L|1|0.38|ENSG00000171495|chr5:41010030-41010030|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	377.9476013183594	3	377.558694	1129.65425	0.14723	5.5586E-05	1.0697	0.00040386	1.2169	0.00045944	377.89346597632084	19.243	0.40143	19.243	19.221	19.623	0					17	9	2	0	0	0	0.73141	1	4844	4844		4.1895	0	1	58981000			19525	14402	14046	14151	19129	19129					0.09461183581561272
HHPHRRRRKPA	11	Unmodified	_HHPHRRRRKPA_					0	0	0			REV__ENST00000273854.7_2_4:66468008-66535587:-|nuORF	REV__ENST00000273854.7_2_4:66468008-66535587:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	725.3228149414062	2	724.421951	1446.82935	-0.91941	-0.00066604	-0.098935	-7.1671E-05	-1.0183	-0.00073771	724.42162160785	149.11	1.9407	149.11	147.87	149.81	0					147	47	4	0	0	0	0.73934	1	57089	57089		0	0	1	835970	+		19526	23284	14047	14152	19130	19130					0.12380739490822634
HHSHRGYRLNY	11	Unmodified	_HHSHRGYRLNY_					0	0	0		HTN3|p.S45L|1|0.19|ENSG00000205649|chr4:70033198-70033198|C/T|missense_variant	HTN3|p.S45L|1|0.19|ENSG00000205649|chr4:70033198-70033198|C/T|missense_variant	HTN3|p.S45L|1|0.19|ENSG00000205649|chr4:70033198-70033198|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	480.47149658203125	3	480.572831	1438.69666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.592	1	29.592	29.092	30.092	0								0	0	0	0.16309	1	9295	9295		2.6312	1.3016	1				19527	14138	14048	14153	19131	19131					-0.005137497564646765
HHTMGDYKV	9	Unmodified	_HHTMGDYKV_					0	0	0		nc|ENSG00000099204|O14639-2|ABLIM1;nc|ENSG00000099204|O14639-6|ABLIM1	nc|ENSG00000099204|O14639-2|ABLIM1	nc|ENSG00000099204|O14639-2|ABLIM1	MULTI-SECPEP	A375_MHC_IP_R1	1	544.6622314453125	2	544.253108	1086.49166	-0.53976	-0.00029376	-2.7744	-0.00151	-3.3141	-0.0018037	544.7543874667406	61.811	0.30664	61.811	61.636	61.943	0					6	4	2	0	0	0	0.67483	1	22250	22250		10.074	0	1	1042900			19528	14502	14049	14154	19132	19132					-0.04812244611071037
HHTQLQAY	8	Unmodified	_HHTQLQAY_					0	0	0		chr6:105285571-105288758|96|15.68|0.51|4.94|-|0|None,PREP|1	chr6:105285571-105288758|96|15.68|0.51|4.94|-|0|None,PREP|1	chr6:105285571-105288758|96|15.68|0.51|4.94|-|0|None,PREP|1	MULTI-SECPEP	A375_MHC_IP_R2	2	499.9828796386719	2	499.246141	996.477728	-0.86449	-0.00043159	-1.1319	-0.00056512	-1.9964	-0.00099671	499.2454455537858	29.882	0.55881	30.581	30.434	30.993	0.69872					13	10	2	0	0	0	0.95423	1	10462	10462		18.135	0	1	1941300			19529	489	14050	14155	19133	19133					-0.020651540478752395
HHYFAYFY	8	Unmodified	_HHYFAYFY_					0	0	0			REV__nc|ENSG00000165246|Q8NFZ3-2|NLGN4Y;REV__nc|ENSG00000196338|Q9NZ94-3|NLGN3	REV__nc|ENSG00000165246|Q8NFZ3-2|NLGN4Y	MULTI-SECPEP	A375_MHC_IP_R1	1	383.57122802734375	3	383.171382	1146.49232	0.33673	0.00012902	-1.4774	-0.00056609	-1.1406	-0.00043706	383.17118597091377	37.67	0.61234	37.67	37.351	37.964	0					22	11	3	0	0	0	0.972	1	12739	12739		7.9102	4.0338	1	5371800	+		19530	19559;22182	14051	14156	19134	19134					-0.0750708189971192
HHYHRRRRRRR	11	Unmodified	_HHYHRRRRRRR_					0	0	0			REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF	REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF	MSMS	A375_MHC_IP_R2	2	843.4840698242188	2	843.486479	1684.95841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.489	1	29.168	28.668	29.668	0.67857								0	0	0	0.1636	1	9842	9842		0	0	1		+		19531	23693	14052	14157	19135	19135					0.1433251417356587
HIAEVSQEV	9	Unmodified	_HIAEVSQEV_					0	0	0		ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	506.9273681640625	2	506.258914	1010.50327	-0.60192	-0.00030473	0.072487	3.6697E-05	-0.52943	-0.00026803	506.25888171491414	32.74	0.55496	32.74	32.535	33.09	0					14	10	2	0	0	0	0.096726	1	10602	10602		71.134	18.865	1	2874100			19532	4828	14053	14158	19136	19136					-0.0015572431608461557
HIAEVSQEV	9	Unmodified	_HIAEVSQEV_					0	0	0		ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	506.6587219238281	2	506.258914	1010.50327	-0.74126	-0.00037527	0.47472	0.00024033	-0.26654	-0.00013494	506.25886176315277	32.015	0.70911	32.752	32.504	33.213	0.73692					23	13	3	0	0	0	0.3607	1	11362	11362		42.095	2.1372	1	3140200			19533	4828	14053	14158	19137	19137					-0.0015572431608461557
HIAITEKAD	9	Unmodified	_HIAITEKAD_					0	0	0		RP1|p.E1175K|1|0.51|ENSG00000104237|chr8:54627405-54627405|G/A|missense_variant	RP1|p.E1175K|1|0.51|ENSG00000104237|chr8:54627405-54627405|G/A|missense_variant	RP1|p.E1175K|1|0.51|ENSG00000104237|chr8:54627405-54627405|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	500.0007629394531	2	499.269281	996.52401	-0.84857	-0.00042367	0.55617	0.00027768	-0.2924	-0.00014599	499.26921718165806	19.741	0.25162	20.351	20.197	20.449	0.61029					7	4	2	0	0	0	0.69507	1	6070	6070		9.3831	0	1	336030			19534	29087	14054	14159	19138	19138					0.02560866063561207
HIDLGIKY	8	Unmodified	_HIDLGIKY_					0	0	0		nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF	nc|ENSG00000142676|P62913-2|RPL11	nc|ENSG00000142676|P62913-2|RPL11	MULTI-SECPEP	A375_MHC_IP_R1	1	480.171142578125	2	479.77146	957.528367	-0.43984	-0.00021102	-0.18403	-8.829E-05	-0.62387	-0.00029931	479.771279255463	55.151	0.45583	55.151	54.975	55.431	0					14	8	2	0	0	0	0.46955	1	19747	19747		56.177	20.05	1	1693200			19535	5326	14055	14160	19139	19139					0.04790375277127623
HIDMDAFY	8	Unmodified	_HIDMDAFY_					0	0	0		nc|ENSG00000122008|Q9UBT6-3|POLK;ENSG00000122008|ENST00000241436|POLK;ENST00000508867.5_1_5:74842847-74877278:+|nuORF;ENST00000506928.5_1_5:74842847-74879138:+|nuORF;nc|ENSG00000122008|Q9UBT6-6|POLK;nc|ENSG00000122008|Q9UBT6-2|POLK;nc|ENSG00000122008|Q9UBT6-5|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK;nc|ENSG00000122008|Q9UBT6-7|POLK;nc|ENSG00000122008|Q9UBT6-4|POLK	nc|ENSG00000122008|Q9UBT6-3|POLK	nc|ENSG00000122008|Q9UBT6-3|POLK	MSMS	A375_MHC_IP_R2	2	506.1922912597656	2	506.21566	1010.41677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.57	1	51.324	50.824	51.824	0.75406								0	0	0	0.16876	1	19018	19018		6.3541	0	1				19536	3755	14056	14161	19140	19140					-0.08802427142313718
HIDVGGHMY	9	Oxidation (M)	_HIDVGGHM(Oxidation (M))Y_		HIDVGGHM(1)Y		HIDVGGHM(110)Y	0	0	1		ENSG00000134504|ENST00000580059|KCTD1;nc|ENSG00000134504|Q719H9|KCTD1;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000153885|Q96SI1-2|KCTD15;ENSG00000153885|ENST00000683859|KCTD15	ENSG00000134504|ENST00000580059|KCTD1;nc|ENSG00000153885|Q96SI1-2|KCTD15	ENSG00000134504|ENST00000580059|KCTD1	MULTI-MSMS	A375_MHC_IP_R1	1	523.1317138671875	2	522.732009	1043.44946	-0.75248	-0.00039335	-0.098378	-5.1425E-05	-0.85086	-0.00044477	522.7320239147249	28.904	0.86142	28.904	28.592	29.453	0					49	16	4	0	0	0	0.0096264	1	9186	9186		109.63	57.361	1	52377000			19537	4581;6045	14057	14162	19141	19141		237			-0.0705222001945458
HIDVGGHMY	9	Oxidation (M)	_HIDVGGHM(Oxidation (M))Y_		HIDVGGHM(1)Y		HIDVGGHM(120)Y	0	0	1		ENSG00000134504|ENST00000580059|KCTD1;nc|ENSG00000134504|Q719H9|KCTD1;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000153885|Q96SI1-2|KCTD15;ENSG00000153885|ENST00000683859|KCTD15	ENSG00000134504|ENST00000580059|KCTD1;nc|ENSG00000153885|Q96SI1-2|KCTD15	ENSG00000134504|ENST00000580059|KCTD1	MULTI-MSMS	A375_MHC_IP_R1	1	523.1314086914062	2	522.732009	1043.44946	-0.86074	-0.00044994	-0.10274	-5.3708E-05	-0.96348	-0.00050364	522.7319552409801	29.69	2.2641	29.69	29.403	31.667	0					97	44	3	0	0	0	0.010002	4	9444	9273;9444;9560;9607		123.1	61.739	1	83462000			19538	4581;6045	14057	14162	19142;19143;19144;19145	19143		237			-0.0705222001945458
HIDVGGHMY	9	Oxidation (M)	_HIDVGGHM(Oxidation (M))Y_		HIDVGGHM(1)Y		HIDVGGHM(44)Y	0	0	1		ENSG00000134504|ENST00000580059|KCTD1;nc|ENSG00000134504|Q719H9|KCTD1;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000153885|Q96SI1-2|KCTD15;ENSG00000153885|ENST00000683859|KCTD15	ENSG00000134504|ENST00000580059|KCTD1;nc|ENSG00000153885|Q96SI1-2|KCTD15	ENSG00000134504|ENST00000580059|KCTD1	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1314697265625	2	522.732009	1043.44946	-0.73592	-0.00038469	-0.76841	-0.00040167	-1.5043	-0.00078636	522.7315761884093	32.71	0.55488	32.71	32.383	32.938	0					22	10	3	0	0	0	0.3243	1	10635	10635		44.407	33.583	1	2808700			19539	4581;6045	14057	14162	19146	19146		237			-0.0705222001945458
HIDVGGHMY	9	Oxidation (M)	_HIDVGGHM(Oxidation (M))Y_		HIDVGGHM(1)Y		HIDVGGHM(74)Y	0	0	1		ENSG00000134504|ENST00000580059|KCTD1;nc|ENSG00000134504|Q719H9|KCTD1;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000153885|Q96SI1-2|KCTD15;ENSG00000153885|ENST00000683859|KCTD15	ENSG00000134504|ENST00000580059|KCTD1;nc|ENSG00000153885|Q96SI1-2|KCTD15	ENSG00000134504|ENST00000580059|KCTD1	MULTI-MSMS	A375_MHC_IP_R2	2	523.2110595703125	2	522.732009	1043.44946	-0.8916	-0.00046607	-0.33894	-0.00017718	-1.2305	-0.00064325	522.7318248944263	28.201	1.1128	28.879	28.301	29.414	0.67857					56	21	3	0	0	0	0.03063	1	9959	9959		74.423	38.296	1	52505000			19540	4581;6045	14057	14162	19147	19147		237			-0.0705222001945458
HIDVGGHMY	9	Oxidation (M)	_HIDVGGHM(Oxidation (M))Y_		HIDVGGHM(1)Y		HIDVGGHM(74)Y	0	0	1		ENSG00000134504|ENST00000580059|KCTD1;nc|ENSG00000134504|Q719H9|KCTD1;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000153885|Q96SI1-2|KCTD15;ENSG00000153885|ENST00000683859|KCTD15	ENSG00000134504|ENST00000580059|KCTD1;nc|ENSG00000153885|Q96SI1-2|KCTD15	ENSG00000134504|ENST00000580059|KCTD1	MULTI-MSMS	A375_MHC_IP_R2	2	523.19482421875	2	522.732009	1043.44946	-1.2866	-0.00067255	-0.09691	-5.0658E-05	-1.3835	-0.0007232	522.7319704963082	29.036	2.3669	29.735	29.434	31.801	0.69872					81	46	2	0	0	0	0.03063	1	10248	10248		74.423	38.296	1	61578000			19541	4581;6045	14057	14162	19148	19148		237			-0.0705222001945458
HIDVGGHMY	9	Unmodified	_HIDVGGHMY_					0	0	0		ENSG00000134504|ENST00000580059|KCTD1;nc|ENSG00000134504|Q719H9|KCTD1;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000153885|Q96SI1-2|KCTD15;ENSG00000153885|ENST00000683859|KCTD15	ENSG00000134504|ENST00000580059|KCTD1;nc|ENSG00000153885|Q96SI1-2|KCTD15	ENSG00000134504|ENST00000580059|KCTD1	MULTI-MSMS	A375_MHC_IP_R1	1	514.7221069335938	2	514.734551	1027.45455	-0.57032	-0.00029356	0.18138	9.3363E-05	-0.38894	-0.0002002	514.7346747839738	36.99	2.4925	36.99	36.695	39.187	0					92	48	4	0	0	0	0.32899	1	13046	13046		28.487	11.545	1	61952000			19542	4581;6045	14057	14163	19149	19149					-0.05807916156823012
HIDVGGHMY	9	Unmodified	_HIDVGGHMY_					0	0	0		ENSG00000134504|ENST00000580059|KCTD1;nc|ENSG00000134504|Q719H9|KCTD1;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000153885|Q96SI1-2|KCTD15;ENSG00000153885|ENST00000683859|KCTD15	ENSG00000134504|ENST00000580059|KCTD1;nc|ENSG00000153885|Q96SI1-2|KCTD15	ENSG00000134504|ENST00000580059|KCTD1	MULTI-MSMS	A375_MHC_IP_R2	2	515.1344604492188	2	514.734551	1027.45455	-0.92569	-0.00047648	0.092276	4.7498E-05	-0.83341	-0.00042899	514.7346524118801	36.157	3.0563	36.927	35.937	38.993	0.7709					105	59	4	0	0	0	0.001809	3	13101	13101;13362;13674		146.01	93.739	1	74755000			19543	4581;6045	14057	14163	19150;19151;19152	19150					-0.05807916156823012
HIEDCGHW	8	Unmodified	_HIEDCGHW_					0	0	0		nc|ENSG00000120915|P34913-3|EPHX2;nc|ENSG00000120915|P34913-2|EPHX2;ENSG00000120915|ENST00000521400|EPHX2	nc|ENSG00000120915|P34913-3|EPHX2	nc|ENSG00000120915|P34913-3|EPHX2	MSMS	A375_MHC_IP_R1	1	498.67926025390625	2	498.703251	995.39195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.066	1	84.066	83.566	84.566	0								0	0	0	0.16876	1	30782	30782		10.183	0.83596	1				19544	3699	14058	14164	19153	19153					-0.10593062225029826
HIEEKQTI	8	Unmodified	_HIEEKQTI_					0	0	0			REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	MULTI-SECPEP	A375_MHC_IP_R1	1	498.968017578125	2	499.269281	996.52401	-0.13173	-6.5768E-05	0.07882	3.9352E-05	-0.052909	-2.6416E-05	499.2691285522925	21.45	0.2544	21.45	21.301	21.555	0					7	4	2	0	0	0	0.97021	1	5675	5675		10.824	0	1	985840	+		19545	17938	14059	14165	19154	19154					0.025608660635725755
HIEVNSGKFN	10	Unmodified	_HIEVNSGKFN_					0	0	0		nc|ENSG00000120156|Q02763-3|TEK;nc|ENSG00000120156|Q02763-2|TEK;ENSG00000120156|ENST00000380036|TEK	nc|ENSG00000120156|Q02763-3|TEK	nc|ENSG00000120156|Q02763-3|TEK	MULTI-SECPEP	A375_MHC_IP_R2	2	573.1726684570312	2	572.790912	1143.56727	-0.15236	-8.727E-05	-0.82587	-0.00047305	-0.97822	-0.00056032	572.7904875104801	46.318	0.30433	47.083	46.906	47.21	0.76519					7	5	2	0	0	0	0.8528	1	17279	17279		21.537	3.3906	1	1009800			19546	3651	14060	14166	19155	19155					0.0012305584086789167
HIGSSFEKY	9	Unmodified	_HIGSSFEKY_					0	0	0		nc|ENSG00000080618|Q96IY4-2|CPB2;ENSG00000080618|ENST00000181383|CPB2	nc|ENSG00000080618|Q96IY4-2|CPB2	nc|ENSG00000080618|Q96IY4-2|CPB2	MULTI-SECPEP	A375_MHC_IP_R2	2	355.9251403808594	3	356.510063	1066.50836	-0.64286	-0.00022919	0.02612	9.3122E-06	-0.61674	-0.00021987	356.5100442662405	26.057	0.35686	26.717	26.5	26.857	0.65992					10	6	2	0	0	0	0.62767	1	8806	8806		11.495	0.6952	1	2412300			19547	1719	14061	14167	19156	19156					-0.02223420453469771
HIHINEILI	9	Unmodified	_HIHINEILI_					0	0	0			REV__ENST00000567224.1_1_15:53809574-53809730:-|nuORF	REV__ENST00000567224.1_1_15:53809574-53809730:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	368.28515625	3	367.885353	1100.63423	-0.22686	-8.3459E-05	0.25658	9.4392E-05	0.029719	1.0933E-05	367.8853668870196	26.001	1.2227	26.66	26.449	27.671	0.65992					45	23	3	0	0	0	0.31062	1	8739	8739		29.841	6.0508	1	17516000	+		19548	26250	14062	14168	19157	19157					0.08793711122621062
HIHINEILI	9	Unmodified	_HIHINEILI_					0	0	0			REV__ENST00000567224.1_1_15:53809574-53809730:-|nuORF	REV__ENST00000567224.1_1_15:53809574-53809730:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	368.285400390625	3	367.885353	1100.63423	0.24193	8.9001E-05	-0.28907	-0.00010635	-0.047148	-1.7345E-05	367.8852876785778	27.547	0.863	28.225	27.69	28.553	0.67857					47	16	4	0	0	0	0.31062	1	9402	9402		29.841	1.3461	1	28923000	+		19549	26250	14062	14168	19158	19158					0.08793711122621062
HIHINEILI	9	Unmodified	_HIHINEILI_					0	0	0			REV__ENST00000567224.1_1_15:53809574-53809730:-|nuORF	REV__ENST00000567224.1_1_15:53809574-53809730:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	367.6211853027344	3	367.885353	1100.63423	-0.22686	-8.3459E-05	0.25658	9.4392E-05	0.029719	1.0933E-05	367.8853668870196	26.001	1.2227	26.66	26.449	27.671	0.65992					45	23	3	0	0	0	0.57304	1	8728	8728		23.79	0	1	17516000	+		19550	26250	14062	14168	19159	19159					0.08793711122621062
HIHINEILI	9	Unmodified	_HIHINEILI_					0	0	0			REV__ENST00000567224.1_1_15:53809574-53809730:-|nuORF	REV__ENST00000567224.1_1_15:53809574-53809730:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	367.885353	1100.63423	0.24193	8.9001E-05	-0.28907	-0.00010635	-0.047148	-1.7345E-05	367.8852876785778	27.547	0.863	28.225	27.69	28.553	0.67857	-0.081184	-0.00017154	NaN	29.841	47	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28923000	+		19551	26250	14062	14168							0.08793711122621062
HIHRAEISKI	10	Unmodified	_HIHRAEISKI_					0	0	0		nc|ENSG00000145247|Q56VL3-2|OCIAD2;ENSG00000145247|ENST00000508632|OCIAD2	nc|ENSG00000145247|Q56VL3-2|OCIAD2	nc|ENSG00000145247|Q56VL3-2|OCIAD2	MULTI-MSMS	A375_MHC_IP_R1	1	402.30328369140625	3	401.903406	1202.68839	-0.50093	-0.00020133	0.48707	0.00019575	-0.013865	-5.5724E-06	401.9036055521552	27.733	0.55453	27.733	27.482	28.037	0					25	10	4	0	0	0	0.69833	1	8448	8448		7.9454	7.9454	1	7274600			19552	5548	14063	14169	19160	19160					0.09515303274179132
HIHRAEISKI	10	Unmodified	_HIHRAEISKI_					0	0	0		nc|ENSG00000145247|Q56VL3-2|OCIAD2;ENSG00000145247|ENST00000508632|OCIAD2	nc|ENSG00000145247|Q56VL3-2|OCIAD2	nc|ENSG00000145247|Q56VL3-2|OCIAD2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	401.903406	1202.68839	-0.50093	-0.00020133	0.48707	0.00019575	-0.013865	-5.5724E-06	401.9036055521552	27.733	0.55453	27.733	27.482	28.037	0	0.043525	0.00032449	NaN	7.9454	25	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7274600			19553	5548	14063	14169							0.09515303274179132
HIIAAKPNVT	10	Unmodified	_HIIAAKPNVT_					0	0	0			REV__tr|U7T4M0|U7T4M0_FUSNUCobW/HypB/UreGnucleotide-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00363PE=4SV=1	REV__tr|U7T4M0|U7T4M0_FUSNUCobW/HypB/UreGnucleotide-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00363PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	532.1859130859375	2	532.316566	1062.61858	-0.73064	-0.00038893	0.26608	0.00014164	-0.46455	-0.00024729	532.3161968883633	65.379	0.71161	65.379	64.954	65.666	0					22	13	2	0	0	0	0.83355	1	23635	23635		17.113	9.5039	1	1473100	+		19554	28802	14064	14170	19161	19161					0.0897742460556401
HIIEHRSL	8	Unmodified	_HIIEHRSL_					0	0	0			REV__nc|ENSG00000184635|P35789-3|ZNF93	REV__nc|ENSG00000184635|P35789-3|ZNF93	MULTI-SECPEP	A375_MHC_IP_R1	1	503.1849670410156	2	502.785433	1003.55631	-0.18903	-9.5043E-05	-0.38859	-0.00019538	-0.57762	-0.00029042	502.7851212948648	35.543	0.30655	35.543	35.319	35.625	0					13	5	3	0	0	0	0.8824	1	11855	11855		30.225	3.8835	1	3817400	+		19555	21829	14065	14171	19162	19162					0.05467698257234588
HIIENIVAV	9	Unmodified	_HIIENIVAV_					0	0	0		ENST00000574823.5_1_16:11935494-11935832:-|nuORF;nc|ENSG00000171490|O76021-2|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;ENSG00000171490|ENST00000571133|RSL1D1	ENST00000574823.5_1_16:11935494-11935832:-|nuORF	ENST00000574823.5_1_16:11935494-11935832:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	504.6976318359375	2	504.297842	1006.58113	-0.23361	-0.00011781	-0.26154	-0.00013189	-0.49515	-0.0002497	504.2976594097216	78.412	3.409	78.412	77.844	81.253	0					170	66	4	0	0	0	0.0097736	2	28773	28567;28773		125.62	44.012	1	121580000			19556	7608	14066	14172	19163;19164	19164					0.07810333339944009
HIIENIVAV	9	Unmodified	_HIIENIVAV_					0	0	0		ENST00000574823.5_1_16:11935494-11935832:-|nuORF;nc|ENSG00000171490|O76021-2|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;ENSG00000171490|ENST00000571133|RSL1D1	ENST00000574823.5_1_16:11935494-11935832:-|nuORF	ENST00000574823.5_1_16:11935494-11935832:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1007.9882202148438	1	1007.58841	1006.58113	0.012359	1.2453E-05	-0.21086	-0.00021246	-0.1985	-0.00020001	1007.588185836639	77.461	1.4273	78.204	77.857	79.285	0.74293					51	27	3	0	0	0	0.010171	2	29356	29356;29510		96.111	37.432	1	12178000			19557	7608	14066	14172	19165;19166	19165					0.07810333339944009
HIIENIVAV	9	Unmodified	_HIIENIVAV_					0	0	0		ENST00000574823.5_1_16:11935494-11935832:-|nuORF;nc|ENSG00000171490|O76021-2|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;ENSG00000171490|ENST00000571133|RSL1D1	ENST00000574823.5_1_16:11935494-11935832:-|nuORF	ENST00000574823.5_1_16:11935494-11935832:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	504.69744873046875	2	504.297842	1006.58113	-0.67851	-0.00034217	-0.0077085	-3.8874E-06	-0.68622	-0.00034606	504.2977987213456	77.404	3.05	78.147	77.707	80.757	0.74293					169	59	4	0	0	0	0.010057	2	29372	29372;29993		125.62	36.721	1	147120000			19558	7608	14066	14172	19167;19168	19167					0.07810333339944009
HIIENIVAV	9	Unmodified	_HIIENIVAV_					0	0	0		ENST00000574823.5_1_16:11935494-11935832:-|nuORF;nc|ENSG00000171490|O76021-2|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;ENSG00000171490|ENST00000571133|RSL1D1	ENST00000574823.5_1_16:11935494-11935832:-|nuORF	ENST00000574823.5_1_16:11935494-11935832:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	1007.58841	1006.58113	0.34601	0.00034864	-0.3852	-0.00038812	-0.039185	-3.9482E-05	1007.5880360541396	78.363	1.3701	78.363	78.048	79.418	0	0.079287	-9.5071E-05	NaN	96.111	47	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14918000			19559	7608	14066	14172							0.07810333339944009
HIIGGVIAV	9	Unmodified	_HIIGGVIAV_					0	0	0		ENSG00000135452|ENST00000257910|TSPAN31;ENST00000550528.5_1_12:58133675-58140075:+|nuORF;ENST00000546993.5_1_12:58138937-58140584:+|nuORF	ENSG00000135452|ENST00000257910|TSPAN31	ENSG00000135452|ENST00000257910|TSPAN31	MULTI-SECPEP	A375_MHC_IP_R1	1	440.1761779785156	2	439.776545	877.538538	0.049125	2.1604E-05	0.032296	1.4203E-05	0.081421	3.5807E-05	439.77645560652985	78.901	0.76355	78.901	78.707	79.47	0					19	14	2	0	0	0	0.14801	1	28817	28817		45.75	17.577	1	1972900			19560	4686	14067	14173	19169	19169					0.09486983002375382
HIINELPFQVQ	11	Unmodified	_HIINELPFQVQ_					0	0	0		ENST00000356554.7_1_1:118070855-118071107:+|nuORF	ENST00000356554.7_1_1:118070855-118071107:+|nuORF	ENST00000356554.7_1_1:118070855-118071107:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	446.6739501953125	3	446.578588	1336.71394	-0.25674	-0.00011465	0.51343	0.00022929	0.2567	0.00011464	446.91314523515706	52.974	0.70933	52.974	52.744	53.453	0					20	13	3	0	0	0	0.73837	1	19033	19033		0.92553	0.149	1	2124400			19561	10968	14068	14174	19170	19170					0.05904733005922935
HIINELPFQVQ	11	Unmodified	_HIINELPFQVQ_					0	0	0		ENST00000356554.7_1_1:118070855-118071107:+|nuORF	ENST00000356554.7_1_1:118070855-118071107:+|nuORF	ENST00000356554.7_1_1:118070855-118071107:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	446.578588	1336.71394	-0.74965	-0.00033478	0.53082	0.00023705	-0.21882	-9.7722E-05	446.9130073537954	52.279	0.50506	53.032	52.78	53.285	0.75225	0.028789	1.4989E-05	NaN	0.92553	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2298100			19562	10968	14068	14174							0.05904733005922935
HIIVLSDSQKL	11	Unmodified	_HIIVLSDSQKL_					0	0	0		ENST00000358517.6_1_6:151164249-151164378:+|nuORF	ENST00000358517.6_1_6:151164249-151164378:+|nuORF	ENST00000358517.6_1_6:151164249-151164378:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	418.64666748046875	3	418.246839	1251.71869	0.095573	3.9973E-05	-0.77897	-0.0003258	-0.6834	-0.00028583	418.24651779947186	46.52	0.75642	46.52	46.094	46.85	0					27	14	3	0	0	0	0.34239	1	16330	16330		43.477	1.409	1	5301800			19563	10996	14069	14175	19171	19171					0.10289617148691832
HIKKLLKTCR	10	Unmodified	_HIKKLLKTCR_					0	0	0		ENST00000487195.5_1_13:46917522-46924493:-|nuORF;ENST00000441284.5_2_13:46917522-46942212:-|nuORF;nc|ENSG00000102445|Q9H714-6|RUBCNL;nc|ENSG00000102445|Q9H714-3|RUBCNL;nc|ENSG00000102445|Q9H714-4|RUBCNL;ENSG00000102445|ENST00000429979|RUBCNL	ENST00000487195.5_1_13:46917522-46924493:-|nuORF	ENST00000487195.5_1_13:46917522-46924493:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	620.7899169921875	2	620.389542	1238.76453	-0.51994	-0.00032257	0.29292	0.00018172	-0.22703	-0.00014085	620.3897491624635	141.82	0.30426	141.85	141.67	141.98	0.030731					9	5	3	0	0	0	0.72078	1	55471	55471		2.9952	0.26005	1	901450			19564	2379	14070	14176	19172	19172					0.15469983849970959
HIKLNTKKL	9	Unmodified	_HIKLNTKKL_					0	0	0		ENSG00000103351|ENST00000576634|CLUAP1	ENSG00000103351|ENST00000576634|CLUAP1	ENSG00000103351|ENST00000576634|CLUAP1	MSMS	A375_MHC_IP_R1	1	365.6206970214844	3	365.572998	1093.69716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.256	1	29.256	28.756	29.756	0								0	0	0	0.15486	1	9127	9127		4.1895	0	1				19565	2446	14071	14177	19173	19173					0.15406276910675842
HIKLQEKPT	9	Unmodified	_HIKLQEKPT_					0	0	0			REV__nc|ENSG00000163738|Q9H903-3|MTHFD2L	REV__nc|ENSG00000163738|Q9H903-3|MTHFD2L	MULTI-MSMS	A375_MHC_IP_R1	1	547.7217407226562	2	547.321848	1092.62914	-0.89149	-0.00048793	0.01376	7.5314E-06	-0.87773	-0.0004804	547.3217270542494	142.75	0.95767	142.75	142.24	143.19	0					42	18	3	0	0	0	0.73415	1	54741	54741		3.9444	0	1	5507700	+		19566	20406	14072	14178	19174	19174					0.08653407259998858
HIKPYPDP	8	Unmodified	_HIKPYPDP_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-MSMS	A375_MHC_IP_R1	1	484.1551818847656	2	483.75581	965.497067	-0.58888	-0.00028487	-0.47304	-0.00022883	-1.0619	-0.00051371	483.7555059896963	135	0.20341	135	134.88	135.08	0					6	3	2	0	0	0	0.7754	1	52074	52074		11.64	0	1	3512400			19567	4224	14073	14179	19175	19175					0.012938022430375895
HIKPYPDP	8	Unmodified	_HIKPYPDP_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-MSMS	A375_MHC_IP_R2	2	484.1552734375	2	483.75581	965.497067	-0.47271	-0.00022868	-0.32287	-0.00015619	-0.79558	-0.00038487	483.7555605571834	134.82	0.20091	134.96	134.85	135.05	0.13901					8	3	3	0	0	0	0.7754	1	53048	53048		11.64	0	1	2405500			19568	4224	14073	14179	19176	19176					0.012938022430375895
HIKQHQTLHY	10	Unmodified	_HIKQHQTLHY_					0	0	0			REV__ENSG00000167637|ENST00000618787|ZNF283	REV__ENSG00000167637|ENST00000618787|ZNF283	MULTI-SECPEP	A375_MHC_IP_R2	2	434.8968811035156	3	435.566794	1303.67855	-0.29226	-0.0001273	-1.0771	-0.00046914	-1.3693	-0.00059643	435.56652127627433	30.624	0.4028	31.342	31.114	31.517	0.71857					13	7	2	0	0	0	0.93911	1	10780	10780		4.1895	0	1	1627600	+		19569	20780	14074	14180	19177	19177					0.038861152688014045
HIKRKIAALKK	11	Unmodified	_HIKRKIAALKK_					0	0	0			REV__ENSG00000188739|ENST00000408888|RBM34	REV__ENSG00000188739|ENST00000408888|RBM34	MSMS	A375_MHC_IP_R1	1	653.4971923828125	2	653.445706	1304.87686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.53	1	104.53	104.03	105.03	0								0	0	0	0.16353	1	38382	38382		0.35063	0.043601	1		+		19570	22111	14075	14181	19178	19178					0.23661580918428626
HILDFSPSL	9	Unmodified	_HILDFSPSL_					0	0	0		ENSG00000124702|ENST00000326974|KLHDC3	ENSG00000124702|ENST00000326974|KLHDC3	ENSG00000124702|ENST00000326974|KLHDC3	MULTI-SECPEP	A375_MHC_IP_R2	2	515.1736450195312	2	514.7742	1027.53385	-0.63509	-0.00032693	-0.013494	-6.9465E-06	-0.64858	-0.00033387	514.7740814339063	98.857	0.66079	99.617	99.403	100.06	0.75977					20	12	2	0	0	0	0.14105	1	37549	37549		42.095	22.838	1	2874700			19571	3922	14076	14182	19179	19179					0.021180540689556437
HILDSQTVVLK	11	Unmodified	_HILDSQTVVLK_					0	0	0		nc|ENSG00000138182|Q96Q89-4|KIF20B;KIF20B|p.E1695Gfs*11|1|0.6|ENSG00000138182|chr10:89768376-89768377|-/A|frameshift_variant;nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;KIF20B|p.I1004Rfs*13|1|0.39|ENSG00000138182|chr10:89737851-89737852|AT/-|frameshift_variant	nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-4|KIF20B	MULTI-MSMS	A375_MHC_IP_R2	2	418.6468200683594	3	418.246839	1251.71869	-0.076021	-3.1795E-05	-0.53482	-0.00022369	-0.61084	-0.00025548	418.24649151749384	45.563	0.65556	46.328	45.947	46.603	0.76519					24	12	3	0	0	0	0.37799	1	17045	17045		40.714	4.7184	1	5161200			19572	14633	14077	14183	19180	19180					0.1028961714871457
HILIRPVLPR	10	Unmodified	_HILIRPVLPR_					0	0	0			REV__ENSG00000125492|ENST00000263610|BARHL1	REV__ENSG00000125492|ENST00000263610|BARHL1	MSMS	A375_MHC_IP_R2	2	405.26080322265625	3	405.267909	1212.7819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.496	1	60.243	59.743	60.743	0.74714								0	0	0	0.15618	1	22516	22516		0.77653	0.27058	1		+		19573	18345	14078	14184	19181	19181					0.18401647447262803
HILPDINQ	8	Unmodified	_HILPDINQ_					0	0	0		ENSG00000070915|ENST00000563236|SLC12A3;nc|ENSG00000070915|P55017-3|SLC12A3;nc|ENSG00000070915|P55017-2|SLC12A3	ENSG00000070915|ENST00000563236|SLC12A3	ENSG00000070915|ENST00000563236|SLC12A3	MSMS	A375_MHC_IP_R2	2	475.1786804199219	2	475.258717	948.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.587	1	86.323	85.823	86.823	0.73601								0	0	0	0.16876	1	32539	32539		15.768	0	1				19574	1503	14079	14185	19182	19182					0.02656900754709568
HIMRAEVPG	9	Unmodified	_HIMRAEVPG_					0	0	0		tr|U7STW3|U7STW3_FUSNUTrksystempotassiumuptakeproteinTrkHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01005PE=3SV=1	tr|U7STW3|U7STW3_FUSNUTrksystempotassiumuptakeproteinTrkHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01005PE=3SV=1	tr|U7STW3|U7STW3_FUSNUTrksystempotassiumuptakeproteinTrkHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01005PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	505.66552734375	2	505.266019	1008.51748	-0.48076	-0.00024291	-0.21879	-0.00011055	-0.69955	-0.00035346	505.26594307196774	27.213	1.0086	27.213	26.878	27.887	0					37	19	3	0	0	0	0.55359	1	8224	8224		10.824	0	1	3289900			19575	29719	14080	14186	19183	19183					0.013566496312137133
HIMRAEVPG	9	Unmodified	_HIMRAEVPG_					0	0	0		tr|U7STW3|U7STW3_FUSNUTrksystempotassiumuptakeproteinTrkHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01005PE=3SV=1	tr|U7STW3|U7STW3_FUSNUTrksystempotassiumuptakeproteinTrkHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01005PE=3SV=1	tr|U7STW3|U7STW3_FUSNUTrksystempotassiumuptakeproteinTrkHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01005PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	504.6787109375	2	505.266019	1008.51748	-1.0235	-0.00051714	-0.42403	-0.00021425	-1.4475	-0.00073139	505.26599810592904	26.61	0.8675	27.27	26.957	27.825	0.65992					36	16	3	0	0	0	0.74412	1	9016	9016		10.074	1.4806	1	2668700			19576	29719	14080	14186	19184	19184					0.013566496312137133
HINDSAPEV	9	Unmodified	_HINDSAPEV_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-SECPEP	A375_MHC_IP_R1	1	491.63494873046875	2	491.235439	980.456324	-0.36033	-0.00017701	-0.42611	-0.00020932	-0.78644	-0.00038633	491.2352293928014	28.758	0.4549	28.758	28.541	28.996	0					15	8	2	0	0	0	0.056023	1	8933	8933		75.761	33.921	1	3804700			19577	7941	14081	14187	19185	19185					-0.034685838672317004
HINVRVKVK	9	Unmodified	_HINVRVKVK_					0	0	0			REV__HSPA4L|p.I498Nfs*5|1|0.07|ENSG00000164070|chr4:127811548-127811549|-/TAACTTATTC|frameshift_variant	REV__HSPA4L|p.I498Nfs*5|1|0.07|ENSG00000164070|chr4:127811548-127811549|-/TAACTTATTC|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	365.3047790527344	3	364.904859	1091.69275	0.1143	4.1707E-05	-0.0034756	-1.2682E-06	0.11082	4.0439E-05	364.9048102837898	33.165	1.1135	33.165	32.585	33.698	0					43	21	3	0	0	0	0.60982	1	10758	10758		14.405	4.2548	1	8916100	+		19578	20444	14082	14188	19186	19186					0.15056812487750904
HIPDHLRPEY	10	Unmodified	_HIPDHLRPEY_					0	0	0		UVSSA|p.A569Pfs*15|1|0.31|ENSG00000163945|chr4:1380182-1380182|T/-|frameshift_variant;ENSG00000163945|ENST00000389851|UVSSA	UVSSA|p.A569Pfs*15|1|0.31|ENSG00000163945|chr4:1380182-1380182|T/-|frameshift_variant	UVSSA|p.A569Pfs*15|1|0.31|ENSG00000163945|chr4:1380182-1380182|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	427.24615478515625	3	426.219283	1275.63602	-0.20737	-8.8383E-05	-0.71025	-0.00030272	-0.91762	-0.00039111	426.2189928652684	32.071	1.1176	32.071	31.769	32.887	0					49	21	4	0	0	0	0.70312	1	10340	10340		10.899	1.355	1	11554000			19579	6750	14083	14189	19187	19187					0.00922720140556521
HIPDHLRPEY	10	Unmodified	_HIPDHLRPEY_					0	0	0		UVSSA|p.A569Pfs*15|1|0.31|ENSG00000163945|chr4:1380182-1380182|T/-|frameshift_variant;ENSG00000163945|ENST00000389851|UVSSA	UVSSA|p.A569Pfs*15|1|0.31|ENSG00000163945|chr4:1380182-1380182|T/-|frameshift_variant	UVSSA|p.A569Pfs*15|1|0.31|ENSG00000163945|chr4:1380182-1380182|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	426.6191101074219	3	426.219283	1275.63602	-0.20523	-8.7474E-05	-0.72828	-0.00031041	-0.93351	-0.00039788	426.2190078221026	31.326	0.86632	32.045	31.77	32.636	0.71857					50	16	4	0	0	0	0.0030841	1	11057	11057		98.634	77.392	1	15190000			19580	6750	14083	14189	19188	19188					0.00922720140556521
HIPDVITYL	9	Unmodified	_HIPDVITYL_					0	0	0		nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENSG00000079459|ENST00000220584|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF;nc|ENSG00000079459|P37268-4|FDFT1	nc|ENSG00000079459|P37268-3|FDFT1	nc|ENSG00000079459|P37268-3|FDFT1	MULTI-SECPEP	A375_MHC_IP_R1	1	536.197265625	2	535.797675	1069.5808	-0.68068	-0.00036471	0.20823	0.00011157	-0.47245	-0.00025314	535.7977198199122	104.08	0.66136	104.08	103.83	104.49	0					24	12	3	0	0	0	0.55359	1	38236	38236		21.747	4.8044	1	1363100			19581	1697	14084	14190	19189	19189					0.04878913620086678
HIPDVITYL	9	Unmodified	_HIPDVITYL_					0	0	0		nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENSG00000079459|ENST00000220584|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF;nc|ENSG00000079459|P37268-4|FDFT1	nc|ENSG00000079459|P37268-3|FDFT1	nc|ENSG00000079459|P37268-3|FDFT1	MULTI-MATCH	A375_MHC_IP_R2	2		2	535.797675	1069.5808	-0.82626	-0.00044271	-1.0038	-0.00053785	-1.8301	-0.00098056	536.2983332047022	103.37	0.55948	104.13	103.68	104.24	0.76428	0.027757	-0.0010062	NaN	28.487	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1467900			19582	1697	14084	14190							0.04878913620086678
HIPLQMITV	9	Unmodified	_HIPLQMITV_					0	0	0		ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000170185|Q8NB14-2|USP38	ENSG00000170185|ENST00000307017|USP38	ENSG00000170185|ENST00000307017|USP38	MULTI-SECPEP	A375_MHC_IP_R2	2	525.666259765625	2	526.30207	1050.58959	-0.58857	-0.00030977	-0.23484	-0.0001236	-0.82341	-0.00043336	526.3020381899772	50.633	0.40538	51.387	51.159	51.564	0.75406					12	7	2	0	0	0	0.74651	1	18967	18967		13.508	4.9146	1	1489400			19583	7479	14085	14191	19190	19190					0.06631563984888089
HIPLSIEPIEI	11	Unmodified	_HIPLSIEPIEI_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R1	1	420.6456604003906	3	420.911456	1259.71254	0.27923	0.00011753	-0.090733	-3.8191E-05	0.1885	7.9341E-05	421.2455071859674	107.3	0.76713	107.3	106.83	107.6	0					25	14	2	0	0	0	0.73779	1	39468	39468		0.50596	0	1	1300500	+		19584	22253	14086	14192	19191	19191					0.09307098917179246
HIRAEQGGYLK	11	Unmodified	_HIRAEQGGYLK_					0	0	0			REV__ENST00000549437.5_1_12:25205883-25232413:+|nuORF	REV__ENST00000549437.5_1_12:25205883-25232413:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	424.9833679199219	3	424.566683	1270.67822	0.4772	0.0002026	-0.24494	-0.00010399	0.23227	9.8613E-05	424.56664889735254	44.885	0.50597	44.885	44.626	45.132	0					12	9	2	0	0	0	0.99778	1	15708	15708		3.8459	0	1	2636200	+		19585	26027	14087	14193	19192	19192					0.053706955489587926
HIRESLPAL	9	Unmodified	_HIRESLPAL_					0	0	0		nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;ENST00000591701.5_1_19:10887861-10906203:+|nuORF	nc|ENSG00000079805|P50570-3|DNM2	nc|ENSG00000079805|P50570-3|DNM2	MULTI-SECPEP	A375_MHC_IP_R1	1	518.9717407226562	2	518.300916	1034.58728	-0.14228	-7.3745E-05	-0.6286	-0.0003258	-0.77088	-0.00039955	518.3006158152116	48.282	0.86139	48.282	48.02	48.882	0					31	16	2	0	0	0	0.74875	1	17104	17104		10.8	0	1	3961800			19586	1703	14088	14194	19193	19193					0.07136851571453917
HIRIQNSGD	9	Unmodified	_HIRIQNSGD_					0	0	0		ENST00000543744.1_1_12:7061038-7061341:+|nuORF;ENST00000536521.5_1_12:7060600-7061341:+|nuORF;ENST00000542277.5_1_12:7060600-7062523:+|nuORF;nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6	ENST00000543744.1_1_12:7061038-7061341:+|nuORF	ENST00000543744.1_1_12:7061038-7061341:+|nuORF	MSMS	A375_MHC_IP_R2	2	520.208740234375	2	520.267604	1038.52066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.88	1	135.01	134.51	135.51	0.13901								0	0	0	0.15486	1	53047	53047		3.9444	0.66309	1				19587	3017	14089	14195	19194	19194					0.002936160095714513
HIRKHRNLSRS	11	Unmodified	_HIRKHRNLSRS_					0	0	0			REV__nc|ENSG00000196418|Q15973-4|ZNF124	REV__nc|ENSG00000196418|Q15973-4|ZNF124	MULTI-MSMS	A375_MHC_IP_R2	2	702.8091430664062	2	702.408175	1402.8018	-0.52491	-0.0003687	0.93752	0.00065852	0.41261	0.00028982	702.4083925463729	149.28	1.9592	149.3	147.95	149.91	0.018265					184	63	4	0	0	0	0.73809	1	57671	57671		1.1933	0.23107	1	931540	+		19588	22195	14090	14196	19195	19195					0.11650791439933528
HIRKKTDEY	9	Unmodified	_HIRKKTDEY_					0	0	0		nc|ENSG00000104946|Q9HA65-3|TBC1D17;ENSG00000104946|ENST00000221543|TBC1D17;nc|ENSG00000104946|Q9HA65-2|TBC1D17;ENST00000596243.5_1_19:50382536-50391878:+|nuORF	nc|ENSG00000104946|Q9HA65-3|TBC1D17	nc|ENSG00000104946|Q9HA65-3|TBC1D17	MSMS	A375_MHC_IP_R1	1	397.2945556640625	3	397.21565	1188.62512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.123	1	18.123	17.623	18.623	0								0	0	0	0.15486	1	4301	4301		0.26902	0	1				19589	2556	14091	14197	19196	19196					0.038353177662884264
HIRPKRTVP	9	Unmodified	_HIRPKRTVP_					0	0	0			REV__ENSG00000172538|ENST00000311787|FAM170B	REV__ENSG00000172538|ENST00000311787|FAM170B	MULTI-SECPEP	A375_MHC_IP_R1	1	369.2344665527344	3	368.564725	1102.67235	0.46498	0.00017138	-2.4596	-0.00090651	-1.9946	-0.00073514	368.89773552637433	45.672	0.60893	45.672	45.434	46.043	0					14	11	2	0	0	0	0.81039	1	15995	15995		1.1933	0	1	3248200	+		19590	21153	14092	14198	19197	19197					0.12511641827927633
HISLHATPLPG	11	Unmodified	_HISLHATPLPG_					0	0	0			REV__ENST00000320442.8_1_12:58014065-58016599:+|nuORF	REV__ENST00000320442.8_1_12:58014065-58016599:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	571.187744140625	2	571.819473	1141.62439	-0.34599	-0.00019784	0.039064	2.2337E-05	-0.30692	-0.00017551	571.8189812256494	58.711	0.50778	58.711	58.379	58.887	0					14	9	2	0	0	0	0.98748	1	21118	21118		13.042	4.8869	1	1864400	+		19591	23561	14093	14199	19198	19198					0.059245231172326385
HIVCVGRTKP	10	Unmodified	_HIVCVGRTKP_					0	0	0		ENST00000338087.9_1_8:134050282-134050504:-|nuORF	ENST00000338087.9_1_8:134050282-134050504:-|nuORF	ENST00000338087.9_1_8:134050282-134050504:-|nuORF	MSMS	A375_MHC_IP_R2	2	370.6014404296875	3	370.546454	1108.61753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.515	1	20.125	19.625	20.625	0.61029								0	0	0	0.15486	1	6003	6003		5.0475	0.15051	1				19592	10835	14094	14200	19199	19199					0.06756886965035847
HIVKYCRYKYL	11	Unmodified	_HIVKYCRYKYL_					0	0	0			REV__nc|ENSG00000080815|P49768-3|PSEN1	REV__nc|ENSG00000080815|P49768-3|PSEN1	MULTI-MSMS	A375_MHC_IP_R1	1	743.804931640625	2	743.405389	1484.79623	-0.77556	-0.00057656	-1.8609	-0.0013834	-2.6364	-0.0019599	743.4040305949311	132.68	0.91422	132.68	132.08	133	0					22	17	2	0	0	0	0.73795	1	51181	51181		1.3295	0.13619	1	3235900	+		19593	16756	14095	14201	19200	19200					0.07321931813248739
HIWKIYHNGV	10	Unmodified	_HIWKIYHNGV_					0	0	0		ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	MSMS	A375_MHC_IP_R1	1	633.7411499023438	2	633.840739	1265.66693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.29	1	58.29	57.79	58.79	0								0	0	0	0.15308	1	20935	20935		10.824	2.9138	1				19594	2952	14096	14202	19201	19201					0.04471918245440065
HIYLKRRL	8	Unmodified	_HIYLKRRL_					0	0	0			REV__ENSG00000183760|ENST00000331256|ACP7	REV__ENSG00000183760|ENST00000331256|ACP7	MULTI-SECPEP	A375_MHC_IP_R1	1	366.95965576171875	3	366.901337	1097.68218	0.057425	2.1069E-05	-3.5413	-0.0012993	-3.4838	-0.0012782	366.9000343330027	19.243	0.29937	19.243	19.221	19.521	0					9	7	2	0	0	0	0.97021	1	4666	4666		10.824	3.5347	1	25848000	+		19595	21776	14097	14203	19202	19202					0.1372482983331338
HKCRECRLERY	11	Unmodified	_HKCRECRLERY_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-2|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-SECPEP	A375_MHC_IP_R1	1	497.6531066894531	3	498.24685	1491.71872	-0.26857	-0.00013382	2.1654	0.0010789	1.8968	0.00094508	498.5826699984368	28.597	0.25403	28.597	28.491	28.745	0					6	4	2	0	0	0	0.99999	1	8822	8822		3.0723	0.22898	1	1390400			19596	3686	14098	14204	19203	19203					-0.007470293945971207
HKEEKLKREE	10	Unmodified	_HKEEKLKREE_					0	0	0		ITSN1|p.E678K|1|0.38|ENSG00000205726|chr21:33797458-33797458|G/A|missense_variant	ITSN1|p.E678K|1|0.38|ENSG00000205726|chr21:33797458-33797458|G/A|missense_variant	ITSN1|p.E678K|1|0.38|ENSG00000205726|chr21:33797458-33797458|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	441.9736328125	3	442.577247	1324.70991	-0.36343	-0.00016085	-2.8109	-0.0012441	-3.1744	-0.0014049	442.5759469731329	23.457	0.25562	23.457	23.278	23.533	0					6	4	2	0	0	0	0.91932	1	6452	6452		11.518	4.4808	1	2465300			19597	14184	14099	14205	19204	19204					0.06054643512243274
HKELIWRAP	9	Unmodified	_HKELIWRAP_					0	0	0		ADGRA2|p.T865I|1|0.47|ENSG00000020181|chr8:37840203-37840203|C/T|missense_variant	ADGRA2|p.T865I|1|0.47|ENSG00000020181|chr8:37840203-37840203|C/T|missense_variant	ADGRA2|p.T865I|1|0.47|ENSG00000020181|chr8:37840203-37840203|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	383.9189758300781	3	383.889097	1148.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.59	1	37.59	37.09	38.09	0								0	0	0	0.15486	1	12684	12684		7.1017	2.9122	1				19598	64	14100	14206	19205	19205					0.07708533216737123
HKELIWRAP	9	Unmodified	_HKELIWRAP_					0	0	0		ADGRA2|p.T865I|1|0.47|ENSG00000020181|chr8:37840203-37840203|C/T|missense_variant	ADGRA2|p.T865I|1|0.47|ENSG00000020181|chr8:37840203-37840203|C/T|missense_variant	ADGRA2|p.T865I|1|0.47|ENSG00000020181|chr8:37840203-37840203|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	383.91876220703125	3	383.889097	1148.64546	-0.25931	-9.9545E-05	-1.9698	-0.0007562	-2.2292	-0.00085575	383.8882291226956	36.254	1.5737	37.025	35.836	37.41	0.7709					65	30	3	0	0	0	0.58047	1	13363	13363		10.8	3.6978	1	38538000			19599	64	14100	14206	19206	19206					0.07708533216737123
HKFDQSTQSL	10	Unmodified	_HKFDQSTQSL_					0	0	0			REV__nc|ENSG00000165626|Q8N7W2-3|BEND7	REV__nc|ENSG00000165626|Q8N7W2-3|BEND7	MULTI-SECPEP	A375_MHC_IP_R1	1	397.2806091308594	3	397.531527	1189.57275	-0.40312	-0.00016025	-0.64231	-0.00025534	-1.0454	-0.00041559	397.531388486444	23.819	0.45657	23.819	23.635	24.092	0					18	8	3	0	0	0	0.66275	1	6722	6722		16.275	2.7559	1	7573400	+		19600	27332	14101	14207	19207	19207					-0.014452653673288296
HKFINCRFI	9	Unmodified	_HKFINCRFI_					0	0	0		nc|ENSG00000185518|Q7L1I2-2|SV2B;ENSG00000185518|ENST00000394232|SV2B	nc|ENSG00000185518|Q7L1I2-2|SV2B	nc|ENSG00000185518|Q7L1I2-2|SV2B	MULTI-MSMS	A375_MHC_IP_R2	2	392.9484558105469	3	393.214816	1176.62262	-0.36999	-0.00014549	2.2746	0.00089439	1.9046	0.0007489	393.2154397773929	49.071	0.35578	49.828	49.69	50.046	0.75737					8	6	2	0	0	0	0.72761	1	18403	18403		4.5289	4.5289	1	1455600			19601	8671	14102	14208	19208	19208					0.041371908276232716
HKGATWPLP	9	Unmodified	_HKGATWPLP_					0	0	0			REV__ENSG00000063438|ENST00000684583|AHRR	REV__ENSG00000063438|ENST00000684583|AHRR	MSMS	A375_MHC_IP_R1	1	503.6763000488281	2	503.777077	1005.5396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.14	1	130.14	129.64	130.64	0								0	0	0	0.15486	1	50065	50065		7.9102	2.6795	1		+		19602	16468	14103	14209	19209	19209					0.03705197371277791
HKGLYFTKFIE	11	Unmodified	_HKGLYFTKFIE_					0	0	0			REV__nc|ENSG00000158290|Q13620-3|CUL4B	REV__nc|ENSG00000158290|Q13620-3|CUL4B	MULTI-MSMS	A375_MHC_IP_R1	1	461.9867858886719	3	461.587084	1381.73942	-0.20339	-9.3883E-05	-0.8927	-0.00041206	-1.0961	-0.00050594	461.58676686288885	23.098	0.66013	23.098	22.924	23.584	0					24	12	4	0	0	0	0.72773	1	6286	6286		11.065	2.3135	1	15314000	+		19603	20069	14104	14210	19210	19210					0.06382207528349682
HKKKHMRW	8	Unmodified	_HKKKHMRW_					0	0	0		ENSG00000205857|ENST00000382119|NANOGNB	ENSG00000205857|ENST00000382119|NANOGNB	ENSG00000205857|ENST00000382119|NANOGNB	MULTI-SECPEP	A375_MHC_IP_R2	2	384.9715576171875	3	384.218672	1149.63419	-0.37671	-0.00014474	1.8534	0.00071212	1.4767	0.00056738	384.21829774221357	18.857	0.16035	19.461	19.423	19.583	0.60308					7	4	2	0	0	0	0.972	1	5730	5730		6.2058	2.6187	1	37515000			19604	9530	14105	14211	19211	19211					0.06535432641612715
HKLGLGLEFQA	11	Unmodified	_HKLGLGLEFQA_					0	0	0		ENSG00000213585|ENST00000265333|VDAC1;ENST00000423609.1_1_X:49397105-49397180:-|nuORF;ENST00000489906.5_1_5:133308464-133311792:-|nuORF	ENSG00000213585|ENST00000265333|VDAC1	ENSG00000213585|ENST00000265333|VDAC1	MULTI-SECPEP	A375_MHC_IP_R1	1	607.2401733398438	2	606.840405	1211.66626	-0.14737	-8.9433E-05	0.17456	0.00010593	0.027189	1.6499E-05	606.8405778727863	70.241	1.1751	70.241	69.933	71.108	0					25	22	2	0	0	0	0.87079	1	25486	25486		27.223	14.181	1	1826700			19605	9571	14106	14212	19212	19212					0.06889078805761528
HKLGLGLEFQA	11	Unmodified	_HKLGLGLEFQA_					0	0	0		ENSG00000213585|ENST00000265333|VDAC1;ENST00000423609.1_1_X:49397105-49397180:-|nuORF;ENST00000489906.5_1_5:133308464-133311792:-|nuORF	ENSG00000213585|ENST00000265333|VDAC1	ENSG00000213585|ENST00000265333|VDAC1	MULTI-SECPEP	A375_MHC_IP_R2	2	607.2401733398438	2	606.840405	1211.66626	-0.30481	-0.00018497	-0.13923	-8.4489E-05	-0.44404	-0.00026946	606.8401975415194	69.251	0.45493	69.985	69.829	70.284	0.73459					13	8	2	0	0	0	0.97182	1	26298	26298		18.373	12.641	1	1874300			19606	9571	14106	14212	19213	19213					0.06889078805761528
HKLVELGASNP	11	Unmodified	_HKLVELGASNP_					0	0	0			REV__ENST00000482054.1_1_9:90341067-90342580:+|nuORF	REV__ENST00000482054.1_1_9:90341067-90342580:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	583.22216796875	2	582.822212	1163.62987	-0.44305	-0.00025822	-0.12019	-7.0047E-05	-0.56323	-0.00032826	582.8221379197388	48.593	0.86355	49.35	49.03	49.894	0.75737					51	16	5	0	0	0	0.78491	1	18197	18197		38.615	5.8291	1	47026000	+		19607	25274	14107	14213	19214	19214					0.054602019090452814
HKRKEHHK	8	Unmodified	_HKRKEHHK_					0	0	0			REV__NFRKB|p.Q522Rfs*29|1|0.25|ENSG00000170322|chr11:129877334-129877334|A/-|frameshift_variant	REV__NFRKB|p.Q522Rfs*29|1|0.25|ENSG00000170322|chr11:129877334-129877334|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	550.713623046875	2	550.315223	1098.61589	-0.84283	-0.00046382	-1.1154	-0.00061382	-1.9582	-0.0010776	550.3146136181771	136.5	0.30901	136.5	136.3	136.61	0					11	5	3	0	0	0	0.7777	1	52599	52599		4.756	0.42677	1	1457500	+		19608	20984	14108	14214	19215	19215					0.07053013991276202
HKRKEHHK	8	Unmodified	_HKRKEHHK_					0	0	0			REV__NFRKB|p.Q522Rfs*29|1|0.25|ENSG00000170322|chr11:129877334-129877334|A/-|frameshift_variant	REV__NFRKB|p.Q522Rfs*29|1|0.25|ENSG00000170322|chr11:129877334-129877334|A/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	550.315223	1098.61589	-0.84283	-0.00046382	-1.1154	-0.00061382	-1.9582	-0.0010776	550.3146136181771	136.5	0.30901	136.5	136.3	136.61	0	0.0094369	0.00032164	NaN	4.756	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1457500	+		19609	20984	14108	14214							0.07053013991276202
HKRKEHHK	8	Unmodified	_HKRKEHHK_					0	0	0			REV__NFRKB|p.Q522Rfs*29|1|0.25|ENSG00000170322|chr11:129877334-129877334|A/-|frameshift_variant	REV__NFRKB|p.Q522Rfs*29|1|0.25|ENSG00000170322|chr11:129877334-129877334|A/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	550.315223	1098.61589	-0.62156	-0.00034206	-1.9098	-0.001051	-2.5314	-0.0013931	550.3140972603198	136.37	0.30521	136.48	136.35	136.66	0.11134	-0.0094369	-0.00055273	NaN	4.756	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	964080	+		19610	20984	14108	14214							0.07053013991276202
HKRKRWFINRH	11	Unmodified	_HKRKRWFINRH_					0	0	0			REV__ENST00000583028.1_1_17:62175367-62207458:-|nuORF	REV__ENST00000583028.1_1_17:62175367-62207458:-|nuORF	MSMS	A375_MHC_IP_R1	1	526.6922607421875	3	526.639398	1576.89637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.172	1	71.172	70.672	71.672	0								0	0	0	0.16334	1	25853	25853		1.3296	0.87513	1		+		19611	26360	14109	14215	19216	19216					0.13099349981939667
HKRVKAHDI	9	Unmodified	_HKRVKAHDI_					0	0	0			REV__nc|ENSG00000143603|Q9UGI6-3|KCNN3	REV__nc|ENSG00000143603|Q9UGI6-3|KCNN3	MSMS	A375_MHC_IP_R1	1	552.7239379882812	2	552.325257	1102.63596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.65	1	130.65	130.15	131.15	0								0	0	0	0.15486	1	50310	50310		7.9102	1.7044	1		+		19612	16755	14110	14216	19217	19217					0.08874764931215395
HKRVKAHDI	9	Unmodified	_HKRVKAHDI_					0	0	0			REV__nc|ENSG00000143603|Q9UGI6-3|KCNN3	REV__nc|ENSG00000143603|Q9UGI6-3|KCNN3	MULTI-MSMS	A375_MHC_IP_R2	2	552.7244873046875	2	552.325257	1102.63596	-0.78996	-0.00043631	-1.7218	-0.00095098	-2.5117	-0.0013873	552.3245172257444	130.43	0.50749	130.65	130.4	130.91	0.2142					14	9	2	0	0	0	0.6898	1	51301	51301		7.9102	4.6288	1	8056300	+		19613	16755	14110	14216	19218	19218					0.08874764931215395
HKSHHLQMI	9	Unmodified	_HKSHHLQMI_					0	0	0			REV__nc|ENSG00000291237|P04179-3|SOD2	REV__nc|ENSG00000291237|P04179-3|SOD2	MULTI-SECPEP	A375_MHC_IP_R1	1	377.24853515625	3	377.534437	1129.58148	0.26654	0.00010063	1.1604	0.00043807	1.4269	0.0005387	377.5353853741538	24.696	0.4548	24.696	24.547	25.002	0					11	8	2	0	0	0	0.78348	1	7055	7055		2.4985	0	1	1077600	+		19614	27562	14111	14217	19219	19219					0.02187429788159534
HKTKVHTKLN	10	Unmodified	_HKTKVHTKLN_					0	0	0			REV__nc|ENSG00000005889|P17010-2|ZFX	REV__nc|ENSG00000005889|P17010-2|ZFX	MULTI-SECPEP	A375_MHC_IP_R2	2	402.30316162109375	3	402.57529	1204.70404	0.10621	4.2756E-05	-2.1291	-0.00085713	-2.0229	-0.00081437	402.57431485870916	134.33	0.3587	134.47	134.24	134.6	0.13901					9	6	2	0	0	0	0.94941	1	52871	52871		0.56317	0	1	819710	+		19615	16127	14112	14218	19220	19220					0.10987589791216124
HKTVPVKAFPA	11	Unmodified	_HKTVPVKAFPA_					0	0	0		ENST00000520757.1_1_8:96047742-96087920:+|nuORF;ENST00000517976.5_1_8:96047742-96070162:+|nuORF;nc|ENSG00000156170|Q330K2-2|NDUFAF6;ENSG00000156170|ENST00000396124|NDUFAF6	ENST00000520757.1_1_8:96047742-96087920:+|nuORF	ENST00000520757.1_1_8:96047742-96087920:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	399.2630920410156	3	398.904636	1193.69208	-0.32205	-0.00012847	0.5931	0.00023659	0.27106	0.00010813	398.9048427037362	19.591	0.61049	19.591	19.318	19.928	0					29	11	4	0	0	0	0.7342	1	4761	4761		2.2527	0	1	11766000			19616	6178	14113	14219	19221	19221					0.10297973048022868
HKWKWTRWKCF	11	Unmodified	_HKWKWTRWKCF_					0	0	0			REV__ENST00000379143.9_1_20:5098158-5098257:-|nuORF	REV__ENST00000379143.9_1_20:5098158-5098257:-|nuORF	MSMS	A375_MHC_IP_R2	2	803.416015625	2	803.416623	1604.81869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.82	1	125.15	124.65	125.65	0.32969								0	0	0	0.16339	1	48406	48406		1.0715	0	1		+		19617	24192	14114	14220	19222	19222					0.04047576001494235
HKWSQRATVW	10	Unmodified	_HKWSQRATVW_					0	0	0			REV__ENST00000378277.8_1_16:89756998-89758964:+|nuORF	REV__ENST00000378277.8_1_16:89756998-89758964:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	433.2851257324219	3	433.563273	1297.66799	-0.021484	-9.3147E-06	-3.5829	-0.0015534	-3.6044	-0.0015627	433.8968008273778	20.716	0.15475	20.716	20.587	20.742	0					4	2	2	0	0	0	0.94163	1	5320	5320		6.1918	5.2296	1	402410	+		19618	24176	14115	14221	19223	19223					0.031061326143571932
HLAAVFEY	8	Unmodified	_HLAAVFEY_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1;REV__nc|ENSG00000151914|Q03001|DST;REV__nc|ENSG00000151914|Q03001-8|DST;REV__nc|ENSG00000127603|O94854|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	A375_MHC_IP_R1	1	949.87744140625	1	949.477794	948.470518	-0.32273	-0.00030643	0.42095	0.00039968	0.098215	9.3253E-05	949.4777815014695	144.47	0.075043	144.47	144.43	144.51	0					5	3	2	0	0	0	0.77842	1	55415	55415		0.69038	0	1	384440	+		19619	18428;19783;27289;27214	14116	14222	19224	19224					-0.005778866482955891
HLAEALHQA	9	Unmodified	_HLAEALHQA_					0	0	0		ENSG00000177830|ENST00000323578|CHID1;ENST00000526714.5_1_11:870485-904855:-|nuORF;nc|ENSG00000177830|Q9BWS9-2|CHID1;ENST00000524832.5_1_11:882499-902261:-|nuORF	ENSG00000177830|ENST00000323578|CHID1	ENSG00000177830|ENST00000323578|CHID1	MULTI-SECPEP	A375_MHC_IP_R1	1	495.6614990234375	2	495.261791	988.509028	-0.61166	-0.00030293	0.090886	4.5012E-05	-0.52078	-0.00025792	495.2618645480694	24	0.35576	24	23.889	24.245	0					8	6	2	0	0	0	0.061442	1	6735	6735		72.968	42.331	1	3289500			19620	8110	14117	14223	19225	19225					0.014314189862261628
HLAEKGRG	8	Unmodified	_HLAEKGRG_					0	0	0		ENSG00000171302|ENST00000392446|CANT1;nc|ENSG00000171302|Q8WVQ1-3|CANT1;nc|ENSG00000171302|Q8WVQ1-2|CANT1	ENSG00000171302|ENST00000392446|CANT1	ENSG00000171302|ENST00000392446|CANT1	MULTI-MSMS	A375_MHC_IP_R2	2	434.643310546875	2	434.243401	866.472249	-0.05018	-2.179E-05	0.049271	2.1395E-05	-0.00090954	-3.9496E-07	434.2433359601919	113.78	3.5077	114.49	113.05	116.56	0.70985					132	68	3	0	0	0	0.77686	1	42678	42678		6.3541	0	1	14425000			19621	7592	14118	14224	19226	19226					0.03367167160342888
HLAELIAEL	9	Unmodified	_HLAELIAEL_					0	0	0		ENSG00000154370|ENST00000284551|TRIM11;nc|ENSG00000154370|Q96F44-3|TRIM11;nc|ENSG00000154370|Q96F44-2|TRIM11	ENSG00000154370|ENST00000284551|TRIM11	ENSG00000154370|ENST00000284551|TRIM11	MULTI-SECPEP	A375_MHC_IP_R2	2	505.1893615722656	2	504.78985	1007.56515	-0.7465	-0.00037683	-0.076674	-3.8704E-05	-0.82318	-0.00041553	504.7897407490989	107.47	0.66151	108.23	107.79	108.46	0.75436					20	12	2	0	0	0	0.1277	1	40560	40560		54.774	16.8	1	2960600			19622	6084	14119	14225	19227	19227					0.06166627103038991
HLAELIAEL	9	Unmodified	_HLAELIAEL_					0	0	0		ENSG00000154370|ENST00000284551|TRIM11;nc|ENSG00000154370|Q96F44-3|TRIM11;nc|ENSG00000154370|Q96F44-2|TRIM11	ENSG00000154370|ENST00000284551|TRIM11	ENSG00000154370|ENST00000284551|TRIM11	MULTI-SECPEP	A375_MHC_IP_R2	2	505.18914794921875	2	504.78985	1007.56515	-0.68624	-0.0003464	-2.2465	-0.001134	-2.9327	-0.0014804	504.78815985311167	107.75	1.939	108.51	108.2	110.14	0.75436					56	37	2	0	0	0	0.07754	1	40773	40773		64.236	22.142	1	2993600			19623	6084	14119	14225	19228	19228					0.06166627103038991
HLAGAPLA	8	Unmodified	_HLAGAPLA_					0	0	0			REV__ENSG00000278803|ENST00000458091|PWWP4	REV__ENSG00000278803|ENST00000458091|PWWP4	MULTI-SECPEP	A375_MHC_IP_R2	2	374.9446716308594	2	375.218863	748.423173	-0.099118	-3.7191E-05	1.6245	0.00060953	1.5254	0.00057234	375.2198783976292	38.463	0.15142	39.238	39.149	39.3	0.77451					4	2	2	0	0	0	0.95327	1	14183	14183		11.114	0	1	535820	+		19624	22983	14120	14226	19229	19229					0.038898788713822796
HLAGQIDKV	9	Unmodified	_HLAGQIDKV_					0	0	0			REV__ENSG00000116903|ENST00000366645|EXOC8	REV__ENSG00000116903|ENST00000366645|EXOC8	MULTI-SECPEP	A375_MHC_IP_R2	2	490.2079772949219	2	490.779816	979.545079	-0.3715	-0.00018232	-0.67407	-0.00033082	-1.0456	-0.00051315	490.7793747110172	44.104	0.45482	44.873	44.53	44.985	0.76909					10	8	2	0	0	0	0.52144	1	16481	16481		30.225	12.078	1	610290	+		19625	17980	14121	14227	19230	19230					0.054488761630864246
HLAIKLEQV	9	Unmodified	_HLAIKLEQV_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-SECPEP	A375_MHC_IP_R1	1	526.2190551757812	2	525.818941	1049.62333	-0.3925	-0.00020639	-0.33438	-0.00017582	-0.72689	-0.00038221	525.8187954243671	51.143	0.76048	51.143	50.864	51.625	0					28	14	3	0	0	0	0.061442	1	18132	18132		63.961	34.879	1	4847800			19626	5536	14122	14228	19231	19231					0.10050308748327552
HLAIKLEQV	9	Unmodified	_HLAIKLEQV_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-SECPEP	A375_MHC_IP_R2	2	526.21875	2	525.818941	1049.62333	-0.66972	-0.00035215	-0.25874	-0.00013605	-0.92846	-0.0004882	525.8188121918021	50.157	0.81367	50.911	50.548	51.361	0.75406					24	15	2	0	0	0	0.61452	1	18854	18854		26.268	7.0112	1	4758300			19627	5536	14122	14228	19232	19232					0.10050308748327552
HLAKFLRNK	9	Unmodified	_HLAKFLRNK_					0	0	0		ENSG00000277258|ENST00000620225|PCGF2	ENSG00000277258|ENST00000620225|PCGF2	ENSG00000277258|ENST00000620225|PCGF2	MSMS	A375_MHC_IP_R1	1	376.2734680175781	3	376.232975	1125.6771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.492	1	49.492	48.992	49.992	0								0	0	0	0.15486	1	17505	17505		4.897	0.36815	1				19628	10026	14123	14229	19233	19233					0.11928525970688497
HLAKVTAEV	9	Unmodified	_HLAKVTAEV_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	A375_MHC_IP_R1	1	484.6816101074219	2	484.282192	966.549831	-0.60188	-0.00029148	-0.52283	-0.0002532	-1.1247	-0.00054468	484.28186936209926	26.549	1.0085	26.549	26.17	27.179	0					24	19	2	0	0	0	0.024574	1	7935	7935		79.596	35.738	1	4814100			19629	6741	14124	14230	19234	19234					0.06521760305849966
HLAKVTAEV	9	Unmodified	_HLAKVTAEV_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	A375_MHC_IP_R2	2	484.6817321777344	2	484.282192	966.549831	-1.0396	-0.00050348	-0.2467	-0.00011947	-1.2863	-0.00062295	484.28192915215317	25.712	0.86399	26.372	26.144	27.008	0.65992					22	16	2	0	0	0	0.0090297	2	8652	8638;8652		99.755	47.487	1	4656000			19630	6741	14124	14230	19235;19236	19236					0.06521760305849966
HLALSAPVYR	10	Unmodified	_HLALSAPVYR_					0	0	0			REV__tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1	REV__tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	376.5931396484375	3	376.217102	1125.62948	0.077393	2.9117E-05	0.12267	4.615E-05	0.20006	7.5267E-05	376.2171978262759	39.734	0.40575	39.734	39.491	39.896	0					10	7	2	0	0	0	0.66712	2	13542	13542;13604		9.544	0	1	1500500	+		19631	28560	14125	14231	19237;19238	19237					0.07168826979818732
HLAMRKIIP	9	Unmodified	_HLAMRKIIP_					0	0	0			REV__ENST00000378962.3_1_X:30595893-30595950:-|nuORF	REV__ENST00000378962.3_1_X:30595893-30595950:-|nuORF	MSMS	A375_MHC_IP_R2	2	360.2389831542969	3	360.223311	1077.6481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.897	1	39.671	39.171	40.171	0.77451								0	0	0	0.15486	1	14340	14340		2.9952	0	1		+		19632	24189	14126	14232	19239	19239					0.11238665350060728
HLANTYISV	9	Unmodified	_HLANTYISV_					0	0	0		nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	MULTI-SECPEP	A375_MHC_IP_R1	1	509.67120361328125	2	509.271824	1016.5291	-0.43049	-0.00021924	-0.17528	-8.9267E-05	-0.60577	-0.0003085	509.2717442902741	57.761	0.91483	57.761	57.109	58.024	0					23	17	3	0	0	0	0.28216	1	20738	20738		41.84	19.103	1	3831000			19633	5758	14127	14233	19240	19240					0.021491699261900976
HLAPNPGV	8	Unmodified	_HLAPNPGV_					0	0	0		ENST00000531006.1_1_8:144698411-144698636:-|nuORF	ENST00000531006.1_1_8:144698411-144698636:-|nuORF	ENST00000531006.1_1_8:144698411-144698636:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	402.136962890625	2	402.72177	803.428987	-0.5274	-0.0002124	0.64251	0.00025875	0.1151	4.6354E-05	402.72199329502234	46.84	0.76432	46.84	46.395	47.159	0					23	14	2	0	0	0	0.85124	1	16569	16569		34.187	13.316	1	1543500			19634	13161	14128	14234	19241	19241					0.01940977383048903
HLAPRTPEV	9	Unmodified	_HLAPRTPEV_					0	0	0		ENSG00000130699|ENST00000252996|TAF4	ENSG00000130699|ENST00000252996|TAF4	ENSG00000130699|ENST00000252996|TAF4	MULTI-SECPEP	A375_MHC_IP_R1	1	510.646728515625	2	510.285266	1018.55598	-0.58885	-0.00030048	-0.12611	-6.435E-05	-0.71496	-0.00036483	510.2851683873043	27.709	0.55507	27.709	27.432	27.987	0					22	10	3	0	0	0	0.23894	1	8464	8464		40.239	16.219	1	5981300			19635	4262	14129	14235	19242	19242					0.047442785373846164
HLAPRTPEV	9	Unmodified	_HLAPRTPEV_					0	0	0		ENSG00000130699|ENST00000252996|TAF4	ENSG00000130699|ENST00000252996|TAF4	ENSG00000130699|ENST00000252996|TAF4	MULTI-SECPEP	A375_MHC_IP_R2	2	510.9732666015625	2	510.285266	1018.55598	-0.8713	-0.00044461	-0.043237	-2.2063E-05	-0.91454	-0.00046668	510.2852427394643	26.991	0.56354	27.653	27.365	27.929	0.66202					22	10	3	0	0	0	0.41434	1	9236	9236		32.786	14.639	1	5958400			19636	4262	14129	14235	19243	19243					0.047442785373846164
HLAPYLATL	9	Unmodified	_HLAPYLATL_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MSMS	A375_MHC_IP_R2	2	499.7059020996094	2	499.78711	997.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.907	1	85.643	85.143	86.143	0.73601								0	0	0	0.1521	1	32278	32278		18.135	2.2878	1				19637	3821	14130	14236	19244	19244					0.06078948311221666
HLASPEGK	8	Unmodified	_HLASPEGK_					0	0	0		ENST00000483033.1_1_1:93620229-93625801:-|nuORF;nc|ENSG00000117500|Q9Y3A6-2|TMED5;ENSG00000117500|ENST00000370282|TMED5	ENST00000483033.1_1_1:93620229-93625801:-|nuORF	ENST00000483033.1_1_1:93620229-93625801:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	420.62762451171875	2	419.72451	837.434466	-0.044291	-1.859E-05	-0.17434	-7.3176E-05	-0.21863	-9.1766E-05	419.7238502514724	103.82	1.5252	104.58	104.19	105.72	0.76428					56	29	3	0	0	0	0.7779	1	39233	39233		2.5775	0.27475	1	6815200			19638	3489	14131	14237	19245	19245					0.009246561748568638
HLAVQRSTF	9	Unmodified	_HLAVQRSTF_					0	0	0		ENSG00000170209|ENST00000303941|ANKK1	ENSG00000170209|ENST00000303941|ANKK1	ENSG00000170209|ENST00000303941|ANKK1	MULTI-SECPEP	A375_MHC_IP_R2	2	530.1902465820312	2	529.790715	1057.56688	-0.61378	-0.00032518	-0.31739	-0.00016815	-0.93118	-0.00049333	529.7904340480684	32.247	0.71234	32.984	32.654	33.367	0.73692					38	13	4	0	0	0	0.60917	1	11418	11418		13.906	5.1606	1	12976000			19639	7481	14132	14238	19246	19246					0.04039680911660071
HLAVVAPRL	9	Unmodified	_HLAVVAPRL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-SECPEP	A375_MHC_IP_R2	2	488.4693908691406	2	488.308544	974.602535	-0.72849	-0.00035573	0.093769	4.5788E-05	-0.63472	-0.00030994	488.30859802488686	50.466	0.35538	51.22	51.006	51.361	0.75406					11	6	2	0	0	0	0.55359	1	18986	18986		21.747	11.673	1	985170			19640	9204	14133	14239	19247	19247					0.11421763159330567
HLCLFGVG	8	Unmodified	_HLCLFGVG_					0	0	0		ENST00000433055.1_1_3:186839062-186891423:-|nuORF;ENST00000296277.8_1_3:186839062-186857041:-|nuORF	ENST00000433055.1_1_3:186839062-186891423:-|nuORF	ENST00000433055.1_1_3:186839062-186891423:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	423.6207580566406	2	423.220549	844.426544	0.05187	2.1953E-05	0.29956	0.00012678	0.35144	0.00014873	423.2206201492918	139.22	0.19975	139.28	139.15	139.35	0.059906					6	3	2	0	0	0	0.77781	1	54562	54562		2.8892	2.8892	1	1066100			19641	10505	14134	14240	19248	19248					-0.0018919434626241127
HLCMCAEGYA	10	Unmodified	_HLCMCAEGYA_					0	0	0		nc|ENSG00000138798|P01133-3|EGF;ENSG00000138798|ENST00000265171|EGF;EGF|p.L347Q|1|0.45|ENSG00000138798|chr4:109959411-109959411|T/A|missense_variant	nc|ENSG00000138798|P01133-3|EGF	nc|ENSG00000138798|P01133-3|EGF	MSMS	A375_MHC_IP_R2	2	549.1753540039062	2	549.21428	1096.41401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.51	1	89.242	88.742	89.742	0.7318								0	0	0	0.1552	1	33684	33684		3.9444	0.94915	1				19642	5038	14135	14241	19249	19249					-0.13034341863112786
HLCWRYGQ	8	Unmodified	_HLCWRYGQ_					0	0	0			REV__nc|ENSG00000100241|O95248|SBF1	REV__nc|ENSG00000100241|O95248|SBF1	MULTI-MSMS	A375_MHC_IP_R1	1	532.649169921875	2	531.750536	1061.48652	-0.68353	-0.00036347	-2.1045	-0.0011191	-2.7881	-0.0014826	531.7501072579327	68.657	0.70983	68.657	68.26	68.969	0					28	13	3	0	0	0	0.77603	1	24958	24958		9.3474	1.4373	1	2666600	+		19643	17063	14136	14242	19250	19250					-0.041765036830383906
HLDATKLLL	9	Unmodified	_HLDATKLLL_					0	0	0		ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17	ENSG00000052841|ENST00000039989|TTC17	ENSG00000052841|ENST00000039989|TTC17	MULTI-SECPEP	A375_MHC_IP_R1	1	512.6893310546875	2	512.313492	1022.61243	-0.48009	-0.00024595	0.014428	7.3919E-06	-0.46566	-0.00023856	512.31339103796	74.082	1.4711	74.082	73.74	75.211	0					56	28	4	0	0	0	0.10362	1	27021	27021		55.503	17.529	1	5924800			19644	1242	14137	14243	19251	19251					0.10202906374036047
HLDATKLLL	9	Unmodified	_HLDATKLLL_					0	0	0		ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17	ENSG00000052841|ENST00000039989|TTC17	ENSG00000052841|ENST00000039989|TTC17	MULTI-MSMS	A375_MHC_IP_R2	2	512.7131958007812	2	512.313492	1022.61243	-0.75292	-0.00038573	0.30755	0.00015756	-0.44537	-0.00022817	512.3135792557696	73.018	1.275	73.754	73.429	74.704	0.73541					48	24	3	0	0	0	0.037683	1	27694	27694		69.105	14.331	1	8494900			19645	1242	14137	14243	19252	19252					0.10202906374036047
HLDEAQRLLY	10	Unmodified	_HLDEAQRLLY_					0	0	0		nc|ENSG00000188785|Q8NEK5|ZNF548;ENSG00000188785|ENST00000336128|ZNF548;ENST00000600421.1_1_19:57901368-57922291:+|nuORF;nc|ENSG00000256060|Q8IVP9-2|ZNF547;ENSG00000152433|ENST00000282282|ZNF547	nc|ENSG00000188785|Q8NEK5|ZNF548	nc|ENSG00000188785|Q8NEK5|ZNF548	MULTI-MSMS	A375_MHC_IP_R1	1	629.732421875	2	629.332944	1256.65134	-0.46065	-0.0002899	0.24323	0.00015307	-0.21741	-0.00013683	629.3331302473646	51.845	0.81171	51.845	51.475	52.287	0					31	15	3	0	0	0	0.0025034	1	18375	18375		97.741	62.809	1	6388900			19646	8936	14138	14244	19253	19253					0.03327586937780325
HLDEAQRLLY	10	Unmodified	_HLDEAQRLLY_					0	0	0		nc|ENSG00000188785|Q8NEK5|ZNF548;ENSG00000188785|ENST00000336128|ZNF548;ENST00000600421.1_1_19:57901368-57922291:+|nuORF;nc|ENSG00000256060|Q8IVP9-2|ZNF547;ENSG00000152433|ENST00000282282|ZNF547	nc|ENSG00000188785|Q8NEK5|ZNF548	nc|ENSG00000188785|Q8NEK5|ZNF548	MULTI-SECPEP	A375_MHC_IP_R1	1	420.2911376953125	3	419.891055	1256.65134	0.2442	0.00010254	-1.1317	-0.0004752	-0.88752	-0.00037266	419.8910022940361	51.916	0.91238	51.916	51.424	52.336	0					32	17	3	0	0	0	0.157	1	18396	18396		79.427	55.463	1	3359800			19647	8936	14138	14244	19254	19254					0.03327586937780325
HLDEAQRLLY	10	Unmodified	_HLDEAQRLLY_					0	0	0		nc|ENSG00000188785|Q8NEK5|ZNF548;ENSG00000188785|ENST00000336128|ZNF548;ENST00000600421.1_1_19:57901368-57922291:+|nuORF;nc|ENSG00000256060|Q8IVP9-2|ZNF547;ENSG00000152433|ENST00000282282|ZNF547	nc|ENSG00000188785|Q8NEK5|ZNF548	nc|ENSG00000188785|Q8NEK5|ZNF548	MULTI-MSMS	A375_MHC_IP_R2	2	629.7327270507812	2	629.332944	1256.65134	-0.92716	-0.00058349	0.33196	0.00020892	-0.59519	-0.00037457	629.3332707219251	51.011	0.9101	51.765	51.412	52.322	0.75406					32	17	3	0	0	0	0.037648	1	19189	19189		79.427	41.453	1	4025500			19648	8936	14138	14244	19255	19255					0.03327586937780325
HLDEAQRLLY	10	Unmodified	_HLDEAQRLLY_					0	0	0		nc|ENSG00000188785|Q8NEK5|ZNF548;ENSG00000188785|ENST00000336128|ZNF548;ENST00000600421.1_1_19:57901368-57922291:+|nuORF;nc|ENSG00000256060|Q8IVP9-2|ZNF547;ENSG00000152433|ENST00000282282|ZNF547	nc|ENSG00000188785|Q8NEK5|ZNF548	nc|ENSG00000188785|Q8NEK5|ZNF548	MULTI-SECPEP	A375_MHC_IP_R2	2	420.2907409667969	3	419.891055	1256.65134	-0.1989	-8.3518E-05	-0.93172	-0.00039122	-1.1306	-0.00047474	420.2243997949698	51.015	1.0128	51.77	51.462	52.475	0.75406					35	19	3	0	0	0	0.20174	1	19210	19210		73.196	48.239	1	4315100			19649	8936	14138	14244	19256	19256					0.03327586937780325
HLDEARTLL	9	Unmodified	_HLDEARTLL_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-SECPEP	A375_MHC_IP_R1	1	534.143310546875	2	534.29583	1066.57711	-0.50387	-0.00026922	0.35094	0.0001875	-0.15293	-8.1712E-05	534.2959260206477	44.168	1.1731	44.168	43.959	45.132	0					41	22	3	0	0	0	0.41434	1	15417	15417		32.786	2.5609	1	10188000			19650	6157	14139	14245	19257	19257					0.04648243846236255
HLDEARTLL	9	Unmodified	_HLDEARTLL_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-SECPEP	A375_MHC_IP_R2	2	534.6951904296875	2	534.29583	1066.57711	-0.65112	-0.00034789	-0.13275	-7.093E-05	-0.78388	-0.00041882	534.2955987139559	43.216	1.3143	43.988	43.775	45.089	0.7724					43	25	3	0	0	0	0.16237	1	16083	16083		47.732	9.5564	1	12146000			19651	6157	14139	14245	19258	19258					0.04648243846236255
HLDEHVPVV	9	Unmodified	_HLDEHVPVV_					0	0	0		ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1767578125	2	522.777274	1043.53999	-0.31873	-0.00016663	-1.6542	-0.00086478	-1.9729	-0.0010314	522.7771919916212	42.646	0.70795	42.646	42.285	42.993	0					27	13	3	0	0	0	0.24479	1	14803	14803		34.102	19.264	1	3474700			19652	7530	14140	14246	19259	19259					0.019965723004588654
HLDEHVPVV	9	Unmodified	_HLDEHVPVV_					0	0	0		ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1766967773438	2	522.777274	1043.53999	-0.56451	-0.00029512	-1.2287	-0.00064235	-1.7932	-0.00093746	522.7770255388449	41.814	0.56219	42.588	42.35	42.913	0.77451					23	10	3	0	0	0	0.24479	1	15546	15546		50.855	40.031	1	3847800			19653	7530	14140	14246	19260	19260					0.019965723004588654
HLDGQPFLRY	10	Unmodified	_HLDGQPFLRY_					0	0	0		nc|ENSG00000204516|Q29980-2|MICB;ENSG00000204516|ENST00000252229|MICB;MICB|p.G49R|1|0.41|ENSG00000204516|chr6:31505691-31505691|G/A|missense_variant;ENSG00000204520|ENST00000449934|MICA	nc|ENSG00000204516|Q29980-2|MICB	nc|ENSG00000204516|Q29980-2|MICB	MULTI-MSMS	A375_MHC_IP_R1	1	623.7222900390625	2	623.32238	1244.63021	-0.55876	-0.00034829	-0.26981	-0.00016818	-0.82857	-0.00051647	623.3222933113974	58.795	0.81424	58.795	58.481	59.295	0					33	15	3	0	0	0	0.051218	1	21107	21107		75.571	47.942	1	4104600			19654	9451	14141	14247	19261	19261					0.017676216288919022
HLDGQPFLRY	10	Unmodified	_HLDGQPFLRY_					0	0	0		nc|ENSG00000204516|Q29980-2|MICB;ENSG00000204516|ENST00000252229|MICB;MICB|p.G49R|1|0.41|ENSG00000204516|chr6:31505691-31505691|G/A|missense_variant;ENSG00000204520|ENST00000449934|MICA	nc|ENSG00000204516|Q29980-2|MICB	nc|ENSG00000204516|Q29980-2|MICB	MULTI-MSMS	A375_MHC_IP_R2	2	623.7220458984375	2	623.32238	1244.63021	-1.0262	-0.00063966	-0.091514	-5.7043E-05	-1.1177	-0.0006967	623.3224204013158	57.913	0.65653	58.662	58.375	59.032	0.74894					28	12	3	0	0	0	0.0065146	1	21892	21892		103.82	61.984	1	3774800			19655	9451	14141	14247	19262	19262					0.017676216288919022
HLDLGILYY	9	Unmodified	_HLDLGILYY_					0	0	0		ENSG00000172269|ENST00000354202|DPAGT1;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;nc|ENSG00000172269|Q9H3H5-3|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1	ENSG00000172269|ENST00000354202|DPAGT1	ENSG00000172269|ENST00000354202|DPAGT1	MULTI-MSMS	A375_MHC_IP_R1	1	554.1979370117188	2	553.797675	1105.5808	-0.43398	-0.00024033	0.1007	5.577E-05	-0.33327	-0.00018456	553.7976468998891	117.79	2.1819	117.79	117.41	119.59	0					103	42	5	0	0	0	0.0091485	4	43469	43213;43458;43469;43855		114.94	59.627	1	111890000			19656	7696	14142	14248	19263;19264;19265;19266	19265					0.03222913620084
HLDLGILYY	9	Unmodified	_HLDLGILYY_					0	0	0		ENSG00000172269|ENST00000354202|DPAGT1;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;nc|ENSG00000172269|Q9H3H5-3|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1	ENSG00000172269|ENST00000354202|DPAGT1	ENSG00000172269|ENST00000354202|DPAGT1	MULTI-MSMS	A375_MHC_IP_R2	2	554.1975708007812	2	553.797675	1105.5808	-0.64029	-0.00035459	0.39571	0.00021914	-0.24458	-0.00013545	553.7978614563103	116.9	2.1244	117.56	117.28	119.4	0.65961					101	41	5	0	0	0	0.0091485	4	44377	44109;44147;44377;44825		114.94	59.627	1	99342000			19657	7696	14142	14248	19267;19268;19269;19270	19269					0.03222913620084
HLDMLSRIKY	10	Unmodified	_HLDMLSRIKY_					0	0	0		ENST00000519589.1_1_8:133141511-133152462:-|nuORF;nc|ENSG00000184156|O43525-2|KCNQ3;ENSG00000184156|ENST00000388996|KCNQ3;KCNQ3|p.E668Sfs*15|1|0.19|ENSG00000184156|chr8:132129879-132129880|-/AGCGA|frameshift_variant	ENST00000519589.1_1_8:133141511-133152462:-|nuORF	ENST00000519589.1_1_8:133141511-133152462:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	425.9678039550781	3	425.900786	1274.68053	-0.0053686	-2.2865E-06	-1.3352	-0.00056865	-1.3405	-0.00057094	425.90049904554684	72.539	0.86147	72.539	72.22	73.082	0					32	16	3	0	0	0	0.70972	1	26503	26503		7.9454	0.46833	1	3469500			19658	8554	14143	14249	19271	19271					0.05417407962386278
HLDQSQKSLY	10	Unmodified	_HLDQSQKSLY_					0	0	0		ZKSCAN5|p.K541Nfs*52|1|0.41|ENSG00000196652|chr7:99531347-99531347|A/-|frameshift_variant;ENSG00000196652|ENST00000326775|ZKSCAN5	ZKSCAN5|p.K541Nfs*52|1|0.41|ENSG00000196652|chr7:99531347-99531347|A/-|frameshift_variant	ZKSCAN5|p.K541Nfs*52|1|0.41|ENSG00000196652|chr7:99531347-99531347|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	610.209228515625	2	609.809302	1217.60405	-0.37328	-0.00022763	0.10217	6.2305E-05	-0.27111	-0.00016533	609.8093277847156	24.798	0.40649	24.798	24.698	25.104	0					10	7	2	0	0	0	0.097312	1	7149	7149		88.364	55.578	1	5079000			19659	9069	14144	14250	19272	19272					0.003953076667812638
HLDQSQKSLY	10	Unmodified	_HLDQSQKSLY_					0	0	0		ZKSCAN5|p.K541Nfs*52|1|0.41|ENSG00000196652|chr7:99531347-99531347|A/-|frameshift_variant;ENSG00000196652|ENST00000326775|ZKSCAN5	ZKSCAN5|p.K541Nfs*52|1|0.41|ENSG00000196652|chr7:99531347-99531347|A/-|frameshift_variant	ZKSCAN5|p.K541Nfs*52|1|0.41|ENSG00000196652|chr7:99531347-99531347|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	610.7102661132812	2	609.809302	1217.60405	-0.74673	-0.00045536	0.42941	0.00026186	-0.31732	-0.0001935	610.3110178866881	24.188	0.25327	24.831	24.705	24.958	0.64368					9	4	3	0	0	0	0.62015	1	7940	7940		19.362	9.288	1	5823300			19660	9069	14144	14250	19273	19273					0.003953076667812638
HLDRCMMWRRW	11	Unmodified	_HLDRCMMWRRW_					0	0	0		ENST00000393104.6_1_10:112641263-112642826:+|nuORF	ENST00000393104.6_1_10:112641263-112642826:+|nuORF	ENST00000393104.6_1_10:112641263-112642826:+|nuORF	MSMS	A375_MHC_IP_R2	2	530.6334228515625	3	530.584809	1588.7326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.438	1	34.19	33.69	34.69	0.75225								0	0	0	0.16297	1	11979	11979		1.3296	0	1				19661	11436	14145	14251	19274	19274					-0.03822075167181538
HLDRKLTVL	9	Unmodified	_HLDRKLTVL_					0	0	0		ENSG00000172171|ENST00000581216|TEFM	ENSG00000172171|ENST00000581216|TEFM	ENSG00000172171|ENST00000581216|TEFM	MULTI-MSMS	A375_MHC_IP_R2	2	365.62060546875	3	365.560869	1093.66078	-0.38106	-0.0001393	0.2548	9.3145E-05	-0.12626	-4.6156E-05	365.56083157494635	28.431	0.3047	29.109	28.909	29.214	0.67857					11	5	3	0	0	0	0.39434	1	9761	9761		24.991	16.835	1	13647000			19662	7684	14146	14252	19275	19275					0.1176940001391813
HLDTDVKRV	9	Unmodified	_HLDTDVKRV_					0	0	0		nc|ENSG00000177963|Q9NPQ8-4|RIC8A;ENSG00000177963|ENST00000526104|RIC8A;nc|ENSG00000177963|Q9NPQ8-3|RIC8A;nc|ENSG00000177963|Q9NPQ8-2|RIC8A	nc|ENSG00000177963|Q9NPQ8-4|RIC8A	nc|ENSG00000177963|Q9NPQ8-4|RIC8A	MULTI-SECPEP	A375_MHC_IP_R1	1	361.9366149902344	3	361.536612	1081.58801	0.020322	7.3472E-06	-0.040046	-1.4478E-05	-0.019724	-7.1308E-06	361.53654860802686	19.508	0.35488	19.508	19.268	19.623	0					18	6	4	0	0	0	0.14438	1	4868	4868		67.081	17.553	1	7737100			19663	8118	14147	14253	19276	19276					0.050476462205324424
HLDTLTEHY	9	Unmodified	_HLDTLTEHY_					0	0	0		nc|ENSG00000105058|Q9Y421-3|FAM32A;ENSG00000105058|ENST00000263384|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	MULTI-MSMS	A375_MHC_IP_R1	1	564.6483154296875	2	564.769645	1127.52474	-0.38011	-0.00021467	2.2489	0.0012701	1.8688	0.0010555	564.7696317642437	33.93	1.4167	33.93	33.393	34.81	0					84	27	5	0	0	0	0.11296	1	11490	11490		48.346	22.078	1	67527000			19664	2565	14148	14254	19277	19277					-0.03392339287370305
HLDTLTEHY	9	Unmodified	_HLDTLTEHY_					0	0	0		nc|ENSG00000105058|Q9Y421-3|FAM32A;ENSG00000105058|ENST00000263384|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	MULTI-MSMS	A375_MHC_IP_R2	2	564.6954956054688	2	564.769645	1127.52474	-0.67572	-0.00038163	2.0803	0.0011749	1.4045	0.00079324	564.7696311901589	33.15	1.4207	33.902	33.483	34.904	0.75225					75	27	4	0	0	0	0.1478	2	12270	11818;12270		42.095	13.308	1	81175000			19665	2565	14148	14254	19278;19279	19279					-0.03392339287370305
HLEEDIEV	8	Unmodified	_HLEEDIEV_					0	0	0			REV__CD33|p.M334I|1|0.2|ENSG00000105383|chr19:51239595-51239595|G/A|missense_variant	REV__CD33|p.M334I|1|0.2|ENSG00000105383|chr19:51239595-51239595|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	492.16314697265625	2	492.237647	982.460741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.94	1	77.683	77.183	78.183	0.74293								0	0	0	0.16876	1	29213	29213		19.439	1.304	1		+		19666	15615	14149	14255	19280	19280					-0.03119119444329499
HLENIRWFT	9	Unmodified	_HLENIRWFT_					0	0	0			REV__ENSG00000205978|ENST00000382554|NYNRIN	REV__ENSG00000205978|ENST00000382554|NYNRIN	MULTI-SECPEP	A375_MHC_IP_R1	1	607.6084594726562	2	608.317097	1214.61964	-0.45117	-0.00027446	-0.13844	-8.4215E-05	-0.58961	-0.00035867	608.3167651234214	129.12	1.5264	129.12	128.63	130.16	0					61	29	3	0	0	0	0.75842	1	49682	49682		13.042	5.1323	1	18842000	+		19667	22589	14150	14256	19281	19281					0.02091638974457055
HLENVTQW	8	Unmodified	_HLENVTQW_					0	0	0			REV__ENSG00000146433|ENST00000684151|TMEM181	REV__ENSG00000146433|ENST00000684151|TMEM181	MULTI-SECPEP	A375_MHC_IP_R1	1	513.9312133789062	2	513.753798	1025.49304	-0.45448	-0.00023349	3.0347	0.0015591	2.5802	0.0013256	514.2567926933981	52.169	0.61072	52.169	51.879	52.49	0					17	11	2	0	0	0	0.90224	1	18437	18437		19.439	0	1	2552600	+		19668	19537	14151	14257	19282	19282					-0.01868287250681533
HLERHRRIHTG	11	Unmodified	_HLERHRRIHTG_					0	0	0		ZNF28|p.K577Nfs*47|1|0.1|ENSG00000198538|chr19:52800114-52800114|T/-|frameshift_variant;nc|ENSG00000198538|P17035-2|ZNF28;ENSG00000198538|ENST00000457749|ZNF28;ENSG00000180257|ENST00000444460|ZNF816;ENSG00000213793|ENST00000638862|ZNF888;ENSG00000167562|ENST00000391785|ZNF701;ENSG00000182986|ENST00000682928|ZNF320;nc|ENSG00000167562|Q9NV72|ZNF701	ZNF28|p.K577Nfs*47|1|0.1|ENSG00000198538|chr19:52800114-52800114|T/-|frameshift_variant;ENSG00000213793|ENST00000638862|ZNF888;nc|ENSG00000167562|Q9NV72|ZNF701	ENSG00000213793|ENST00000638862|ZNF888	MULTI-MSMS	A375_MHC_IP_R1	1	471.9986267089844	3	471.264109	1410.7705	-0.35125	-0.00016553	0.88939	0.00041914	0.53814	0.0002536	471.2644641560707	36.031	0.40645	36.031	35.83	36.236	0					15	7	3	0	0	0	0.73064	1	12054	12054		8.2864	1.2493	1	4036700			19669	9583;14747;9278	14152	14258	19283	19283					0.08154218405820757
HLERHRRIHTG	11	Unmodified	_HLERHRRIHTG_					0	0	0		ZNF28|p.K577Nfs*47|1|0.1|ENSG00000198538|chr19:52800114-52800114|T/-|frameshift_variant;nc|ENSG00000198538|P17035-2|ZNF28;ENSG00000198538|ENST00000457749|ZNF28;ENSG00000180257|ENST00000444460|ZNF816;ENSG00000213793|ENST00000638862|ZNF888;ENSG00000167562|ENST00000391785|ZNF701;ENSG00000182986|ENST00000682928|ZNF320;nc|ENSG00000167562|Q9NV72|ZNF701	ZNF28|p.K577Nfs*47|1|0.1|ENSG00000198538|chr19:52800114-52800114|T/-|frameshift_variant;ENSG00000213793|ENST00000638862|ZNF888;nc|ENSG00000167562|Q9NV72|ZNF701	ENSG00000213793|ENST00000638862|ZNF888	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	471.264109	1410.7705	-0.82405	-0.00038835	1.2573	0.00059254	0.43329	0.00020419	471.26472544877674	35.236	0.45432	35.999	35.829	36.283	0.76338	-0.015785	0.00020589	NaN	8.2864	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4105500			19670	9583;14747;9278	14152	14258							0.08154218405820757
HLESLKEPEP	10	Unmodified	_HLESLKEPEP_					0	0	0		nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;ENSG00000174373|ENST00000680220|RALGAPA1;ENST00000443361.1_1_9:108285096-108287232:+|nuORF	nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1	nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1	MULTI-MSMS	A375_MHC_IP_R1	1	393.90380859375	3	393.539911	1177.5979	-0.036668	-1.443E-05	-0.16352	-6.435E-05	-0.20018	-7.878E-05	393.5398437771949	24.616	0.60514	24.616	24.397	25.002	0					26	11	3	0	0	0	0.57505	1	7068	7068		14.957	7.8554	1	21504000			19671	7873	14153	14259	19284	19284					0.01620789435264669
HLESLKEPEP	10	Unmodified	_HLESLKEPEP_					0	0	0		nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;ENSG00000174373|ENST00000680220|RALGAPA1;ENST00000443361.1_1_9:108285096-108287232:+|nuORF	nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1	nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1	MULTI-MSMS	A375_MHC_IP_R2	2	393.9396057128906	3	393.539911	1177.5979	-0.42383	-0.0001668	0.30265	0.0001191	-0.12119	-4.7692E-05	393.5399587279821	23.933	0.45943	24.563	24.333	24.792	0.63014					14	8	2	0	0	0	0.57505	1	7789	7789		14.957	7.9201	1	18953000			19672	7873	14153	14259	19285	19285					0.01620789435264669
HLFETISQA	9	Unmodified	_HLFETISQA_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-SECPEP	A375_MHC_IP_R1	1	523.2131958007812	2	523.269281	1044.52401	-0.48307	-0.00025278	0.14682	7.6824E-05	-0.33626	-0.00017595	523.2693239700459	60.138	0.61093	60.138	59.752	60.363	0					24	11	3	0	0	0	0.050875	1	21672	21672		74.423	40.32	1	13168000			19673	10032	14154	14260	19286	19286					0.0035286606359932193
HLFETISQA	9	Unmodified	_HLFETISQA_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	A375_MHC_IP_R2	2	523.2131958007812	2	523.269281	1044.52401	-0.96373	-0.00050429	-0.32327	-0.00016916	-1.287	-0.00067345	523.2690988878098	59.224	0.55692	59.971	59.641	60.198	0.74714					19	10	2	0	0	0	0.03063	1	22385	22385		74.423	32.328	1	17368000			19674	10032	14154	14260	19287	19287					0.0035286606359932193
HLFFVMFVWSY	11	Unmodified	_HLFFVMFVWSY_					0	0	0		nc|ENSG00000180776|Q5W0Z9-2|ZDHHC20;nc|ENSG00000180776|Q5W0Z9-4|ZDHHC20;nc|ENSG00000180776|Q5W0Z9-3|ZDHHC20;ENSG00000180776|ENST00000400590|ZDHHC20	nc|ENSG00000180776|Q5W0Z9-2|ZDHHC20	nc|ENSG00000180776|Q5W0Z9-2|ZDHHC20	MSMS	A375_MHC_IP_R1	1	492.4774169921875	3	492.577531	1474.71076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.831	1	49.831	49.331	50.331	0								0	0	0	0.16249	1	17632	17632		2.6312	1.3016	1				19675	8315	14155	14261	19288	19288					-0.007602333723980337
HLFFVMFVWSY	11	Unmodified	_HLFFVMFVWSY_					0	0	0		nc|ENSG00000180776|Q5W0Z9-2|ZDHHC20;nc|ENSG00000180776|Q5W0Z9-4|ZDHHC20;nc|ENSG00000180776|Q5W0Z9-3|ZDHHC20;ENSG00000180776|ENST00000400590|ZDHHC20	nc|ENSG00000180776|Q5W0Z9-2|ZDHHC20	nc|ENSG00000180776|Q5W0Z9-2|ZDHHC20	MSMS	A375_MHC_IP_R2	2	492.4775695800781	3	492.577531	1474.71076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.121	1	49.878	49.378	50.378	0.75737								0	0	0	0.16191	1	18453	18453		4.4062	2.4786	1				19676	8315	14155	14261	19289	19289					-0.007602333723980337
HLFGNLEKL	9	Unmodified	_HLFGNLEKL_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	536.2030029296875	2	535.803291	1069.59203	-0.7891	-0.0004228	-0.28427	-0.00015231	-1.0734	-0.00057511	535.8033091177896	67.739	0.71338	68.475	68.205	68.919	0.73631					31	13	3	0	0	0	0.21838	1	25657	25657		57.249	35.712	1	3172900			19677	9008	14156	14262	19290	19290					0.06001735714244205
HLFGNLEKL	9	Unmodified	_HLFGNLEKL_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	535.803291	1069.59203	-0.61643	-0.00033028	-0.067558	-3.6198E-05	-0.68398	-0.00036648	535.8033493995011	68.827	1.1673	68.827	68.463	69.631	0	0.17557	0.00010176	NaN	57.249	42	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3718700			19678	9008	14156	14262							0.06001735714244205
HLFKDKVVL	9	Unmodified	_HLFKDKVVL_					0	0	0		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF;PRMT1|p.D94N|1|0.41|ENSG00000126457|chr19:49681997-49681997|G/A|missense_variant	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-MSMS	A375_MHC_IP_R1	1	367.2939758300781	3	366.893848	1097.65972	0.31622	0.00011602	-0.009351	-3.4308E-06	0.30687	0.00011259	366.8937965989606	46.046	0.75687	46.046	45.789	46.545	0					34	14	3	0	0	0	0.052747	1	16134	16134		63.227	0	1	6514000			19679	4043	14157	14263	19291	19291					0.11479185645043799
HLFKDKVVL	9	Unmodified	_HLFKDKVVL_					0	0	0		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF;PRMT1|p.D94N|1|0.41|ENSG00000126457|chr19:49681997-49681997|G/A|missense_variant	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-MSMS	A375_MHC_IP_R2	2	367.29400634765625	3	366.893848	1097.65972	0.019662	7.214E-06	0.17245	6.327E-05	0.19211	7.0484E-05	366.8938357245587	44.913	0.71359	45.682	45.441	46.154	0.76909					31	13	3	0	0	0	0.033808	1	16763	16763		71.708	0	1	6893600			19680	4043	14157	14263	19292	19292					0.11479185645043799
HLFLGACG	8	Unmodified	_HLFLGACG_					0	0	0		ENST00000317204.10_1_11:1297899-1298181:-|nuORF	ENST00000317204.10_1_11:1297899-1298181:-|nuORF	ENST00000317204.10_1_11:1297899-1298181:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	409.60479736328125	2	409.204899	816.395244	-0.34837	-0.00014255	0.60235	0.00024648	0.25398	0.00010393	409.20507022432804	134.53	0.45398	134.53	134.22	134.67	0					16	8	2	0	0	0	0.77554	1	51834	51834		11.114	0	1	3974000			19681	10666	14158	14264	19293	19293					-0.020297673803497673
HLFLGACG	8	Unmodified	_HLFLGACG_					0	0	0		ENST00000317204.10_1_11:1297899-1298181:-|nuORF	ENST00000317204.10_1_11:1297899-1298181:-|nuORF	ENST00000317204.10_1_11:1297899-1298181:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	409.6050720214844	2	409.204899	816.395244	0.11777	4.819E-05	0.3379	0.00013827	0.45567	0.00018646	409.2049831060427	134.38	0.51086	134.52	134.24	134.75	0.13901					18	9	2	0	0	0	0.77554	1	52846	52846		11.114	0	1	4945000			19682	10666	14158	14264	19294	19294					-0.020297673803497673
HLFRDVAEV	9	Unmodified	_HLFRDVAEV_					0	0	0		ENSG00000132781|ENST00000456914|MUTYH;nc|ENSG00000132781|Q9UIF7-5|MUTYH;nc|ENSG00000132781|Q9UIF7-4|MUTYH;nc|ENSG00000132781|Q9UIF7-3|MUTYH;nc|ENSG00000132781|Q9UIF7-2|MUTYH;nc|ENSG00000132781|Q9UIF7|MUTYH;ENST00000492494.5_1_1:45798942-45805603:-|nuORF;ENST00000479746.6_1_1:45798723-45805603:-|nuORF;ENST00000476789.5_1_1:45798723-45805992:-|nuORF	ENSG00000132781|ENST00000456914|MUTYH	ENSG00000132781|ENST00000456914|MUTYH	MULTI-SECPEP	A375_MHC_IP_R2	2	543.6898193359375	2	543.290548	1084.56654	-0.94667	-0.00051432	0.96096	0.00052208	0.014288	7.7625E-06	543.2908951536999	50.633	0.7585	51.387	51.006	51.765	0.75406					20	14	2	0	0	0	0.50484	1	19054	19054		28.495	11.382	1	2491800			19683	4448	14159	14265	19295	19295					0.027642611918054172
HLFSGHLSTL	10	Unmodified	_HLFSGHLSTL_					0	0	0		nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF;ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF	nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF	nc|ENSG00000242802|O43299-2|AP5Z1	MULTI-MSMS	A375_MHC_IP_R1	1	556.697998046875	2	556.298373	1110.58219	-0.55471	-0.00030859	0.27426	0.00015257	-0.28045	-0.00015601	556.2983890481077	60.286	0.81406	60.286	60.057	60.871	0					26	15	2	0	0	0	0.13045	1	21708	21708		75.761	35.811	1	3386000			19684	9803;12446	14160	14266	19296	19296					0.03132547708855782
HLFSGHLSTL	10	Unmodified	_HLFSGHLSTL_					0	0	0		nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF;ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF	nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF	nc|ENSG00000242802|O43299-2|AP5Z1	MULTI-SECPEP	A375_MHC_IP_R2	2	556.6976928710938	2	556.298373	1110.58219	-1.1778	-0.00065523	-0.28058	-0.00015609	-1.4584	-0.00081131	556.2982353355334	59.224	0.7588	59.971	59.641	60.4	0.74714					23	14	2	0	0	0	0.043506	1	22417	22417		85.642	51.24	1	3026700			19685	9803;12446	14160	14266	19297	19297					0.03132547708855782
HLFTRVGSR	9	Unmodified	_HLFTRVGSR_					0	0	0			REV__ENSG00000184575|ENST00000332707|XPOT	REV__ENSG00000184575|ENST00000332707|XPOT	MULTI-SECPEP	A375_MHC_IP_R1	1	357.9378662109375	3	358.205197	1071.59376	0.19793	7.0899E-05	2.3603	0.00084548	2.5582	0.00091638	358.2060260033983	39.272	0.45832	39.272	38.983	39.441	0					12	8	2	0	0	0	0.73363	1	13405	13405		10.8	10.8	1	4427300	+		19686	21826	14161	14267	19298	19298					0.06082789522861276
HLFVGDLDKV	10	Unmodified	_HLFVGDLDKV_					0	0	0		nc|ENSG00000158352|Q9ULL8-2|SHROOM4;ENSG00000158352|ENST00000376020|SHROOM4	nc|ENSG00000158352|Q9ULL8-2|SHROOM4	nc|ENSG00000158352|Q9ULL8-2|SHROOM4	MULTI-MSMS	A375_MHC_IP_R2	2	572.2135620117188	2	571.813856	1141.61316	-0.26241	-0.00015005	-0.17401	-9.9504E-05	-0.43642	-0.00024955	571.8135811912485	67.504	0.66075	68.24	67.85	68.511	0.73631					18	12	2	0	0	0	0.11994	1	25568	25568		59.368	37.622	1	1182600			19687	6302	14162	14268	19299	19299					0.04801701023075111
HLGDFLVFL	9	Unmodified	_HLGDFLVFL_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.R3751Gfs*17|1|0.29|ENSG00000103657|chr15:63643484-63643484|G/-|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	A375_MHC_IP_R1	1	531.1945190429688	2	530.794935	1059.57532	-0.8289	-0.00043998	-0.028635	-1.5199E-05	-0.85754	-0.00045518	530.794885167804	131.95	0.30246	131.95	131.78	132.08	0					15	5	3	0	0	0	0.033557	1	50884	50884		81.864	43.713	1	6668300			19688	2464	14163	14269	19300	19300					0.047912348282807216
HLGDFLVFL	9	Unmodified	_HLGDFLVFL_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.R3751Gfs*17|1|0.29|ENSG00000103657|chr15:63643484-63643484|G/-|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	A375_MHC_IP_R2	2	531.19482421875	2	530.794935	1059.57532	-0.6032	-0.00032018	-0.068143	-3.617E-05	-0.67134	-0.00035635	530.794815915462	131.68	0.50488	131.87	131.75	132.25	0.18953					14	9	3	0	0	0	0.033557	1	51825	51825		93.883	57.839	1	7500900			19689	2464	14163	14269	19301	19301					0.047912348282807216
HLGEALALAAE	11	Unmodified	_HLGEALALAAE_					0	0	0			REV__ENSG00000129932|ENST00000427575|DOHH	REV__ENSG00000129932|ENST00000427575|DOHH	MULTI-SECPEP	A375_MHC_IP_R2	2	365.2852478027344	3	365.532868	1093.57677	-0.33153	-0.00012119	-0.28631	-0.00010466	-0.61785	-0.00022584	365.53268062095293	24.635	1.1178	25.278	24.755	25.873	0.64368					27	21	2	0	0	0	0.9754	1	7971	7971		9.7643	8.5494	1	8035900	+		19690	18513	14164	14270	19302	19302					0.03372824126358864
HLGHLPPLSL	10	Unmodified	_HLGHLPPLSL_					0	0	0			REV__nc|ENSG00000077092|P10826|RARB	REV__nc|ENSG00000077092|P10826|RARB	MULTI-MSMS	A375_MHC_IP_R2	2	362.2453918457031	3	361.881831	1082.62366	-0.11535	-4.1743E-05	0.16081	5.8195E-05	0.045462	1.6452E-05	361.88177075424323	27.547	0.7097	28.225	27.843	28.553	0.67857					29	13	3	0	0	0	0.7116	1	9289	9289		7.1017	1.3699	1	13301000	+		19691	27116	14165	14271	19303	19303					0.08565728468170164
HLGMAMRT	8	Unmodified	_HLGMAMRT_					0	0	0		tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	457.98675537109375	2	458.728215	915.441877	-0.52149	-0.00023922	-4.1531	-0.0019052	-4.6746	-0.0021444	458.72569506894206	37.862	0.25642	38.636	38.483	38.739	0.77451					6	4	2	0	0	0	0.91495	1	13872	13872		18.135	1.1927	1	965560			19692	29974	14166	14272	19304	19304					-0.01922650820722538
HLGPEGRSV	9	Unmodified	_HLGPEGRSV_					0	0	0		nc|ENSG00000291317|P0DTL5|TMEM276	nc|ENSG00000291317|P0DTL5|TMEM276	nc|ENSG00000291317|P0DTL5|TMEM276	MULTI-MSMS	A375_MHC_IP_R1	1	476.6538391113281	2	476.253966	950.493378	-0.60975	-0.0002904	0.6915	0.00032933	0.081746	3.8932E-05	476.25420155365083	19.745	0.66159	19.745	19.318	19.98	0					26	12	3	0	0	0	0.16945	1	4922	4922		40.239	13.971	1	10100000			19693	14962	14167	14273	19305	19305					0.01615132469191849
HLGPEGRSV	9	Unmodified	_HLGPEGRSV_					0	0	0		nc|ENSG00000291317|P0DTL5|TMEM276	nc|ENSG00000291317|P0DTL5|TMEM276	nc|ENSG00000291317|P0DTL5|TMEM276	MULTI-MSMS	A375_MHC_IP_R2	2	476.3314208984375	2	476.253966	950.493378	-0.79594	-0.00037907	-0.82942	-0.00039501	-1.6254	-0.00077408	476.2537856245049	18.955	0.20984	19.559	19.423	19.633	0.60308					7	5	2	0	0	0	0.57432	1	5675	5675		16.149	2.6412	1	9435100			19694	14962	14167	14273	19306	19306					0.01615132469191849
HLGSLRFKDP	10	Unmodified	_HLGSLRFKDP_					0	0	0		ENST00000372210.7_1_9:134400102-134400243:-|nuORF	ENST00000372210.7_1_9:134400102-134400243:-|nuORF	ENST00000372210.7_1_9:134400102-134400243:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	390.96319580078125	3	390.552374	1168.63529	-0.44866	-0.00017523	0.88095	0.00034406	0.43229	0.00016883	390.55258294602885	19.166	0.3023	19.769	19.633	19.935	0.60308					8	5	2	0	0	0	0.91556	1	5920	5920		3.3196	0.24738	1	752970			19695	11191	14168	14274	19307	19307					0.05771925491512775
HLHDLHEAV	9	Unmodified	_HLHDLHEAV_					0	0	0			REV__nc|ENSG00000038532|Q2KHT3-2|CLEC16A	REV__nc|ENSG00000038532|Q2KHT3-2|CLEC16A	MULTI-SECPEP	A375_MHC_IP_R2	2	536.1722412109375	2	535.772522	1069.53049	-0.74511	-0.00039921	-1.5266	-0.00081794	-2.2718	-0.0012171	535.7716600844196	90.144	0.45885	90.876	90.597	91.056	0.7318					13	8	2	0	0	0	0.73363	1	34293	34293		15.847	4.3525	1	1951200	+		19696	27097	14169	14275	19308	19308					-0.0014919598506821785
HLHPDLISI	9	Unmodified	_HLHPDLISI_					0	0	0			REV__OR13C9|p.P58S|1|0.28|ENSG00000136839|chr9:104618033-104618033|G/A|missense_variant	REV__OR13C9|p.P58S|1|0.28|ENSG00000136839|chr9:104618033-104618033|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	523.5939331054688	2	522.795466	1043.57638	-0.70218	-0.0003671	-0.33454	-0.0001749	-1.0367	-0.00054199	522.7957749917207	86.333	0.45573	86.333	86.072	86.527	0					19	8	3	0	0	0	0.58271	1	31626	31626		20.454	5.6154	1	2273100	+		19697	18961	14170	14276	19309	19309					0.056334491971938405
HLHRQADNL	9	Unmodified	_HLHRQADNL_					0	0	0			REV__ENSG00000186230|ENST00000334181|ZNF749	REV__ENSG00000186230|ENST00000334181|ZNF749	MULTI-SECPEP	A375_MHC_IP_R2	2	552.6446533203125	2	552.288871	1102.56319	-0.84728	-0.00046794	-1.6316	-0.00090111	-2.4789	-0.0013691	552.2885873013244	39.598	0.86343	40.372	39.914	40.777	0.77451					19	16	2	0	0	0	0.58271	1	14582	14582		6.2058	0	1	2042900	+		19698	21957	14171	14277	19310	19310					0.01601011137813657
HLHVADTRF	9	Unmodified	_HLHVADTRF_					0	0	0		ENSG00000078061|ENST00000377045|ARAF	ENSG00000078061|ENST00000377045|ARAF	ENSG00000078061|ENST00000377045|ARAF	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6851806640625	2	548.28834	1094.56213	-0.32372	-0.00017749	-1.4857	-0.00081458	-1.8094	-0.00099208	548.2880739911842	49.811	0.25555	49.811	49.692	49.947	0					6	4	2	0	0	0	0.75466	1	17658	17658		7.9102	0	1	535350			19699	1664	14172	14278	19311	19311					0.018627967689099023
HLIAEIHTA	9	Unmodified	_HLIAEIHTA_					0	0	0		nc|ENSG00000087494|P12272-2|PTHLH;ENSG00000087494|ENST00000545234|PTHLH;nc|ENSG00000087494|P12272-3|PTHLH	nc|ENSG00000087494|P12272-2|PTHLH	nc|ENSG00000087494|P12272-2|PTHLH	MULTI-SECPEP	A375_MHC_IP_R1	1	503.17938232421875	2	502.779816	1003.54508	-0.15833	-7.9607E-05	-0.69965	-0.00035177	-0.85798	-0.00043138	502.7795653324632	35.781	0.35895	35.781	35.573	35.932	0					14	6	3	0	0	0	0.011031	1	11925	11925		120.45	62.979	1	5315400			19700	1875	14173	14279	19312	19312					0.043448761630770605
HLIAEIHTA	9	Unmodified	_HLIAEIHTA_					0	0	0		nc|ENSG00000087494|P12272-2|PTHLH;ENSG00000087494|ENST00000545234|PTHLH;nc|ENSG00000087494|P12272-3|PTHLH	nc|ENSG00000087494|P12272-2|PTHLH	nc|ENSG00000087494|P12272-2|PTHLH	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1793518066406	2	502.779816	1003.54508	-0.84299	-0.00042384	-0.069472	-3.4929E-05	-0.91246	-0.00045877	502.7797440901689	34.847	0.45367	35.61	35.375	35.829	0.76338					20	8	3	0	0	0	0.0091148	1	12607	12607		141.83	81.437	1	6023000			19701	1875	14173	14279	19313	19313					0.043448761630770605
HLIEPLANA	9	Unmodified	_HLIEPLANA_					0	0	0		nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	MULTI-SECPEP	A375_MHC_IP_R1	1	489.674072265625	2	489.274367	976.53418	-0.3452	-0.0001689	0.15885	7.7719E-05	-0.18635	-9.1178E-05	489.2743916532153	58.399	1.8798	58.399	57.974	59.854	0					68	36	3	0	0	0	0.1277	1	20929	20929		64.236	35.155	1	17981000			19702	4857	14174	14280	19314	19314					0.04497473788808293
HLIEPLANA	9	Unmodified	_HLIEPLANA_					0	0	0		nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	MULTI-SECPEP	A375_MHC_IP_R2	2	489.6735534667969	2	489.274367	976.53418	-0.89218	-0.00043652	-0.029192	-1.4283E-05	-0.92137	-0.0004508	489.2743138167496	57.497	1.1662	58.246	57.814	58.98	0.74894					50	22	3	0	0	0	0.1277	1	21672	21672		64.236	43.822	1	17676000			19703	4857	14174	14280	19315	19315					0.04497473788808293
HLIHEVTKV	9	Unmodified	_HLIHEVTKV_					0	0	0		nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB;ENST00000524437.5_1_11:62402291-62406896:-|nuORF	nc|ENSG00000089597|Q14697-2|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	MULTI-MSMS	A375_MHC_IP_R1	1	359.6133117675781	3	359.213469	1074.61858	-0.22248	-7.9919E-05	-0.16945	-6.0868E-05	-0.39193	-0.00014079	359.21337223558135	26.492	1.1111	26.492	26.118	27.229	0					55	21	4	0	0	0	0.042871	3	7870	7870;7897;7981		67.081	28.466	1	29554000			19704	1929	14175	14281	19316;19317;19318	19316					0.0842542460554796
HLIHEVTKV	9	Unmodified	_HLIHEVTKV_					0	0	0		nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB;ENST00000524437.5_1_11:62402291-62406896:-|nuORF	nc|ENSG00000089597|Q14697-2|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	MULTI-SECPEP	A375_MHC_IP_R1	1	538.6319580078125	2	538.316566	1074.61858	-1.0015	-0.00053914	0.1025	5.518E-05	-0.89902	-0.00048396	538.316321973226	26.477	0.3549	26.477	26.322	26.677	0					11	6	2	0	0	0	0.73577	1	7942	7942		14.405	1.3629	1	1731600			19705	1929	14175	14281	19319	19319					0.0842542460554796
HLIHEVTKV	9	Unmodified	_HLIHEVTKV_					0	0	0		nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB;ENST00000524437.5_1_11:62402291-62406896:-|nuORF	nc|ENSG00000089597|Q14697-2|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	MULTI-MSMS	A375_MHC_IP_R2	2	359.61322021484375	3	359.213469	1074.61858	-0.65204	-0.00023422	0.16154	5.8027E-05	-0.4905	-0.00017619	359.21347021473247	25.564	1.1165	26.223	25.992	27.109	0.65992					53	21	3	0	0	0	0.01185	2	8553	8553;8770		93.938	32.336	1	30176000			19706	1929	14175	14281	19320;19321	19320					0.0842542460554796
HLIKHRRT	8	Unmodified	_HLIKHRRT_					0	0	0		nc|ENSG00000162086|Q96N20|ZNF75A;ENSG00000162086|ENST00000669516|ZNF75A	nc|ENSG00000162086|Q96N20|ZNF75A	nc|ENSG00000162086|Q96N20|ZNF75A	MSMS	A375_MHC_IP_R1	1	354.13409423828125	3	354.22107	1059.64138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.066	1	79.066	78.566	79.566	0								0	0	0	0.16876	1	28859	28859		11.64	0.81637	1				19707	6506	14176	14282	19322	19322					0.11394488513701617
HLINFSETL	9	Unmodified	_HLINFSETL_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-SECPEP	A375_MHC_IP_R1	1	537.68408203125	2	537.284931	1072.55531	-0.78337	-0.00042089	-0.43858	-0.00023564	-1.222	-0.00065654	537.284671997771	87.156	0.86572	87.156	86.881	87.747	0					30	16	3	0	0	0	0.10103	1	31960	31960		71.922	52.665	1	4405200			19708	9999;14937	14177	14283	19323	19323					0.021934390976639406
HLINFSETL	9	Unmodified	_HLINFSETL_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-SECPEP	A375_MHC_IP_R2	2	537.6839599609375	2	537.284931	1072.55531	-0.71454	-0.00038391	-0.23496	-0.00012624	-0.94949	-0.00051015	537.2847100126002	86.226	0.96901	86.959	86.54	87.509	0.733					37	18	4	0	0	0	0.10103	1	32788	32788		71.922	51.469	1	3525900			19709	9999;14937	14177	14283	19324	19324					0.021934390976639406
HLINQQIAV	9	Unmodified	_HLINQQIAV_					0	0	0		ENSG00000119042|ENST00000417098|SATB2;nc|ENSG00000119042|Q9UPW6-2|SATB2;ENST00000483346.2_1_2:200213306-200233427:-|nuORF	ENSG00000119042|ENST00000417098|SATB2	ENSG00000119042|ENST00000417098|SATB2	MULTI-SECPEP	A375_MHC_IP_R1	1	518.7003784179688	2	518.300916	1034.58728	-0.45936	-0.00023809	-0.15634	-8.1029E-05	-0.6157	-0.00031912	518.3007240232332	55.8	0.55935	55.8	55.482	56.041	0					15	10	2	0	0	0	0.58271	1	19982	19982		26.884	12.045	1	2704200			19710	3571	14178	14284	19325	19325					0.07136851571453917
HLINQQIAV	9	Unmodified	_HLINQQIAV_					0	0	0		ENSG00000119042|ENST00000417098|SATB2;nc|ENSG00000119042|Q9UPW6-2|SATB2;ENST00000483346.2_1_2:200213306-200233427:-|nuORF	ENSG00000119042|ENST00000417098|SATB2	ENSG00000119042|ENST00000417098|SATB2	MULTI-SECPEP	A375_MHC_IP_R2	2	518.7003784179688	2	518.300916	1034.58728	-0.8702	-0.00045103	0.015029	7.7896E-06	-0.85517	-0.00044324	518.300899901391	54.814	0.5624	55.564	55.37	55.933	0.75075					21	10	3	0	0	0	0.3607	1	20711	20711		42.095	9.7891	1	4245600			19711	3571	14178	14284	19326	19326					0.07136851571453917
HLINRFANR	9	Unmodified	_HLINRFANR_					0	0	0			REV__ENSG00000034239|ENST00000262103|CLXN	REV__ENSG00000034239|ENST00000262103|CLXN	MULTI-MSMS	A375_MHC_IP_R1	1	381.2488708496094	3	380.884346	1139.63121	-0.12543	-4.7775E-05	-0.47153	-0.0001796	-0.59696	-0.00022737	380.8841246030304	29.273	0.40685	29.273	28.996	29.403	0					10	7	2	0	0	0	0.64136	1	9116	9116		12.241	2.8575	1	4081500	+		19712	16311	14179	14285	19327	19327					0.06697880788465227
HLIPETFGV	9	Unmodified	_HLIPETFGV_					0	0	0		ENSG00000204344|ENST00000685781|STK19;nc|ENSG00000204344|P49842-3|STK19;ENST00000466132.5_1_6:31939873-31948823:+|nuORF;ENST00000492583.5_1_6:31939873-31948823:+|nuORF;nc|ENSG00000204344|P49842-2|STK19;nc|ENSG00000204344|P49842-1|STK19;ENST00000466336.5_1_6:31940188-31948320:+|nuORF;ENST00000473983.5_1_6:31940188-31947331:+|nuORF;ENST00000478486.5_1_6:31940188-31947331:+|nuORF;ENST00000479644.1_1_6:31939773-31940810:+|nuORF	ENSG00000204344|ENST00000685781|STK19;ENST00000478486.5_1_6:31940188-31947331:+|nuORF	ENSG00000204344|ENST00000685781|STK19	MULTI-SECPEP	A375_MHC_IP_R1	1	507.176513671875	2	506.776742	1011.53893	-0.31065	-0.00015743	-0.1846	-9.3548E-05	-0.49525	-0.00025098	506.7766527857537	88.255	0.66261	88.255	88.052	88.714	0					21	12	2	0	0	0	0.14105	1	32407	32407		50.855	21.773	1	3024300			19713	9431;12464	14180	14286	19328	19328					0.033623579315758434
HLIPETFGV	9	Unmodified	_HLIPETFGV_					0	0	0		ENSG00000204344|ENST00000685781|STK19;nc|ENSG00000204344|P49842-3|STK19;ENST00000466132.5_1_6:31939873-31948823:+|nuORF;ENST00000492583.5_1_6:31939873-31948823:+|nuORF;nc|ENSG00000204344|P49842-2|STK19;nc|ENSG00000204344|P49842-1|STK19;ENST00000466336.5_1_6:31940188-31948320:+|nuORF;ENST00000473983.5_1_6:31940188-31947331:+|nuORF;ENST00000478486.5_1_6:31940188-31947331:+|nuORF;ENST00000479644.1_1_6:31939773-31940810:+|nuORF	ENSG00000204344|ENST00000685781|STK19;ENST00000478486.5_1_6:31940188-31947331:+|nuORF	ENSG00000204344|ENST00000685781|STK19	MULTI-SECPEP	A375_MHC_IP_R2	2	506.6404724121094	2	506.776742	1011.53893	-0.64227	-0.00032549	0.53285	0.00027004	-0.10942	-5.5453E-05	506.7772320573435	87.337	1.3662	88.07	87.712	89.078	0.73301					36	26	2	0	0	0	0.3243	1	33304	33304		44.407	27.294	1	3027900			19714	9431;12464	14180	14286	19329	19329					0.033623579315758434
HLIQEIVSVV	10	Unmodified	_HLIQEIVSVV_					0	0	0			REV__ENSG00000009335|ENST00000348165|UBE3C	REV__ENSG00000009335|ENST00000348165|UBE3C	MULTI-MSMS	A375_MHC_IP_R1	1	379.91748046875	3	379.560646	1135.66011	0.188	7.1359E-05	0.18122	6.8784E-05	0.36922	0.00014014	379.56069907230227	46.825	1.0722	46.825	46.444	47.517	0					66	20	5	0	0	0	0.7086	1	16601	16601		8.4443	0.49891	1	106120000	+		19715	16183	14181	14287	19330	19330					0.09770560574224874
HLIQRLVP	8	Unmodified	_HLIQRLVP_					0	0	0			REV__ENSG00000152454|ENST00000282308|ZNF256	REV__ENSG00000152454|ENST00000282308|ZNF256	MULTI-SECPEP	A375_MHC_IP_R1	1	488.6667785644531	2	488.308544	974.602535	-0.1419	-6.9291E-05	-0.12847	-6.2734E-05	-0.27037	-0.00013203	488.30831076563436	51.424	0.40633	51.424	51.168	51.575	0					10	7	2	0	0	0	0.94479	1	18230	18230		13.508	0	1	1438400	+		19716	19804	14182	14288	19331	19331					0.11421763159319198
HLISVGCHMT	10	Unmodified	_HLISVGCHMT_					0	0	0		ZNF567|p.L106Tfs*7|1|0.23|ENSG00000189042|chr19:36719033-36719034|-/A|frameshift_variant;nc|ENSG00000189042|Q8N184-2|ZNF567;nc|ENSG00000189042|Q8N184-1|ZNF567;ENSG00000189042|ENST00000682579|ZNF567	ZNF567|p.L106Tfs*7|1|0.23|ENSG00000189042|chr19:36719033-36719034|-/A|frameshift_variant	ZNF567|p.L106Tfs*7|1|0.23|ENSG00000189042|chr19:36719033-36719034|-/A|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	549.7160034179688	2	549.265161	1096.51577	-0.87412	-0.00048012	1.4261	0.00078331	0.55198	0.00030318	549.7671563919502	70.817	0.45511	71.551	71.402	71.857	0.7342					10	8	2	0	0	0	0.70329	1	26954	26954		10.824	0	1	3369900			19717	8954	14183	14289	19332	19332					-0.028627274490645505
HLKALTAL	8	Unmodified	_HLKALTAL_					0	0	0		ENSG00000123095|ENST00000242728|BHLHE41	ENSG00000123095|ENST00000242728|BHLHE41	ENSG00000123095|ENST00000242728|BHLHE41	MULTI-SECPEP	A375_MHC_IP_R1	1	434.1419372558594	2	433.776545	865.538538	-0.35576	-0.00015432	-0.011591	-5.0278E-06	-0.36735	-0.00015935	433.7764734876084	41.139	0.30183	41.139	40.913	41.215	0					10	5	2	0	0	0	0.86263	1	14197	14197		26.884	3.7352	1	1992800			19718	3823	14184	14290	19333	19333					0.10038983002345958
HLKALTAL	8	Unmodified	_HLKALTAL_					0	0	0		ENSG00000123095|ENST00000242728|BHLHE41	ENSG00000123095|ENST00000242728|BHLHE41	ENSG00000123095|ENST00000242728|BHLHE41	MULTI-SECPEP	A375_MHC_IP_R2	2	434.1419677734375	2	433.776545	865.538538	-0.30359	-0.00013169	-0.11667	-5.0609E-05	-0.42026	-0.0001823	433.77642415422474	40.03	0.30398	40.805	40.626	40.93	0.77451					8	5	2	0	0	0	0.73563	1	14754	14754		36.044	5.8194	1	1176000			19719	3823	14184	14290	19334	19334					0.10038983002345958
HLKDANDY	8	Unmodified	_HLKDANDY_					0	0	0			REV__nc|ENSG00000166025|Q8IY63-2|AMOTL1	REV__nc|ENSG00000166025|Q8IY63-2|AMOTL1	MULTI-MSMS	A375_MHC_IP_R1	1	488.6300354003906	2	488.230156	974.445759	-0.37216	-0.0001817	0.040278	1.9665E-05	-0.33188	-0.00016204	488.23016132177816	38.548	0.61218	38.548	38.168	38.78	0					26	11	3	0	0	0	0.75389	1	13056	13056		19.257	7.6167	1	7286000	+		19720	20647	14185	14291	19335	19335					-0.042485665216759116
HLKDANDY	8	Unmodified	_HLKDANDY_					0	0	0			REV__nc|ENSG00000166025|Q8IY63-2|AMOTL1	REV__nc|ENSG00000166025|Q8IY63-2|AMOTL1	MULTI-MSMS	A375_MHC_IP_R2	2	488.62982177734375	2	488.230156	974.445759	-0.76452	-0.00037326	-0.32974	-0.00016099	-1.0943	-0.00053425	488.22996074090696	37.851	0.56441	38.625	38.382	38.946	0.77451					29	10	3	0	0	0	0.70783	1	13864	13864		32.305	9.1571	1	7566500	+		19721	20647	14185	14291	19336	19336					-0.042485665216759116
HLKGRRHR	8	Unmodified	_HLKGRRHR_					0	0	0		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MSMS	A375_MHC_IP_R1	1	353.9496154785156	3	353.884681	1058.63221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.325	1	55.325	54.825	55.825	0								0	0	0	0.16876	1	19783	19783		10.824	2.6684	1				19722	1276	14186	14292	19337	19337					0.1052413994800645
HLKKCGGK	8	Unmodified	_HLKKCGGK_					0	0	0		ENSG00000198924|ENST00000361384|DCLRE1A	ENSG00000198924|ENST00000361384|DCLRE1A	ENSG00000198924|ENST00000361384|DCLRE1A	MSMS	A375_MHC_IP_R2	2	435.6222229003906	2	435.752547	869.490542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.937	1	98.695	98.195	99.195	0.75825								0	0	0	0.16876	1	37165	37165		0.69038	0	1				19723	9372	14187	14293	19338	19338					0.0505758581068676
HLKKEKRRLN	10	Unmodified	_HLKKEKRRLN_					0	0	0		ENSG00000255359|ENST00000532798|CCDC179	ENSG00000255359|ENST00000532798|CCDC179	ENSG00000255359|ENST00000532798|CCDC179	MSMS	A375_MHC_IP_R2	2	441.1689758300781	3	441.277355	1320.81024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.583	1	18.179	17.679	18.679	0.59616								0	0	0	0.15637	1	5177	5177		0.15932	0	1				19724	9890	14188	14294	19339	19339					0.16266345356552847
HLKKTELLSKV	11	Unmodified	_HLKKTELLSKV_					0	0	0		ENSG00000151320|ENST00000280979|AKAP6;nc|ENSG00000151320|Q13023-2|AKAP6;ENST00000555950.5_1_14:33086197-33201884:+|nuORF	ENSG00000151320|ENST00000280979|AKAP6	ENSG00000151320|ENST00000280979|AKAP6	MULTI-SECPEP	A375_MHC_IP_R1	1	432.1204528808594	3	432.606367	1294.79727	0.18761	8.1162E-05	0.99315	0.00042964	1.1808	0.00051081	432.60689864112817	69.948	0.55481	69.948	69.631	70.185	0					20	10	3	0	0	0	0.99999	1	25348	25348		1.4551	1.4551	1	1308900			19725	5894	14189	14295	19340	19340					0.16166469453787613
HLKPRHAAASP	11	Unmodified	_HLKPRHAAASP_					0	0	0		ENST00000478198.1_1_7:756348-756453:-|nuORF	ENST00000478198.1_1_7:756348-756453:-|nuORF	ENST00000478198.1_1_7:756348-756453:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	396.59320068359375	3	395.559751	1183.65742	-0.40354	-0.00015963	-0.30402	-0.00012026	-0.70756	-0.00027988	395.55962124423866	18.985	0.29975	19.588	19.483	19.783	0.60308					15	5	4	0	0	0	0.73658	1	5645	5645		2.6312	0.13275	1	6689900			19726	12459	14190	14296	19341	19341					0.07294149959943752
HLKRTIPGA	9	Unmodified	_HLKRTIPGA_					0	0	0		ENSG00000137509|ENST00000313010|PRCP;nc|ENSG00000137509|P42785-2|PRCP	ENSG00000137509|ENST00000313010|PRCP	ENSG00000137509|ENST00000313010|PRCP	MSMS	A375_MHC_IP_R2	2	496.7042236328125	2	496.803626	991.592698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.49	1	114.2	113.7	114.7	0.70985								0	0	0	0.15486	1	42789	42789		2.3027	0	1				19727	4893	14191	14297	19342	19342					0.09656575153951508
HLKSSRPV	8	Unmodified	_HLKSSRPV_					0	0	0			REV__LETMD1|p.A39V|1|0.33|ENSG00000050426|chr12:51048472-51048472|C/T|missense_variant	REV__LETMD1|p.A39V|1|0.33|ENSG00000050426|chr12:51048472-51048472|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	462.28350830078125	2	462.274701	922.534849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.073	1	26.733	26.233	27.233	0.65992								0	0	0	0.16876	1	8779	8779		11.64	2.2929	1		+		19728	26924	14192	14298	19343	19343					0.07048313228528968
HLLAIILLLLK	11	Unmodified	_HLLAIILLLLK_					0	0	0		ENST00000594643.1_1_19:48893647-48894615:-|nuORF;ENST00000599084.1_1_19:48892794-48894615:-|nuORF;ENSG00000105438|ENST00000330720|KDELR1	ENST00000594643.1_1_19:48893647-48894615:-|nuORF	ENST00000594643.1_1_19:48893647-48894615:-|nuORF	MSMS	A375_MHC_IP_R2	2	630.7247314453125	2	630.444309	1258.87407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.488	1	98.244	97.744	98.744	0.75586								0	0	0	0.16353	1	37001	37001		0.35063	0	1				19729	2607	14193	14299	19344	19344					0.25498312740955953
HLLALLEYR	9	Unmodified	_HLLALLEYR_					0	0	0		tr|U7T3Y8|U7T3Y8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00308PE=4SV=1	tr|U7T3Y8|U7T3Y8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00308PE=4SV=1	tr|U7T3Y8|U7T3Y8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00308PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	376.58917236328125	3	376.557236	1126.64988	0.18719	7.0488E-05	-0.2728	-0.00010273	-0.085612	-3.2238E-05	376.8917068635072	39.673	0.35641	40.447	40.32	40.676	0.77451					8	6	2	0	0	0	0.74412	1	14730	14730		10.151	4.8537	1	865120			19730	29990	14194	14300	19345	19345					0.09161997639648689
HLLCGGLY	8	Unmodified	_HLLCGGLY_					0	0	0		ENST00000564704.5_1_16:67289660-67296168:+|nuORF;ENSG00000135740|ENST00000299798|SLC9A5	ENST00000564704.5_1_16:67289660-67296168:+|nuORF	ENST00000564704.5_1_16:67289660-67296168:+|nuORF	MSMS	A375_MHC_IP_R1	1	438.2533874511719	2	438.225831	874.437109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.791	1	31.791	31.291	32.291	0								0	0	0	0.16876	1	10210	10210		11.114	0.93107	1				19731	13540	14195	14301	19346	19346					-0.005132116918503016
HLLDARLIH	9	Unmodified	_HLLDARLIH_					0	0	0			REV__ECSIT|p.P311H|1|0.49|ENSG00000130159|chr19:11507715-11507715|G/T|missense_variant	REV__ECSIT|p.P311H|1|0.49|ENSG00000130159|chr19:11507715-11507715|G/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	362.59759521484375	3	363.217214	1086.62981	-0.14145	-5.1377E-05	-0.033579	-1.2197E-05	-0.17503	-6.3573E-05	363.2169985973876	41.692	0.40972	42.467	42.249	42.659	0.77451					14	7	3	0	0	0	0.77901	1	15496	15496		2.9952	0	1	1383000	+		19732	16055	14196	14302	19347	19347					0.08996246699712174
HLLEEPIYL	9	Unmodified	_HLLEEPIYL_					0	0	0		nc|ENSG00000065457|Q9BUB4-2|ADAT1;ENSG00000065457|ENST00000564657|ADAT1	nc|ENSG00000065457|Q9BUB4-2|ADAT1	nc|ENSG00000065457|Q9BUB4-2|ADAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	564.2105712890625	2	563.810782	1125.60701	-0.42754	-0.00024105	0.095826	5.4027E-05	-0.33171	-0.00018702	563.8107984840121	99.448	3.036	99.448	99.067	102.1	0					124	59	4	0	0	0	0.035471	1	36708	36708		81.864	37.457	1	27778000			19733	1383	14197	14303	19348	19348					0.04923182791549152
HLLERSWYA	9	Unmodified	_HLLERSWYA_					0	0	0		nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1;ENST00000529207.5_1_11:64899759-64900720:-|nuORF;ENST00000449943.5_1_11:64900197-64901072:-|nuORF;ENST00000533685.1_1_11:64900197-64900596:-|nuORF	nc|ENSG00000162298|Q86TM6-2|SYVN1	nc|ENSG00000162298|Q86TM6-2|SYVN1	MULTI-SECPEP	A375_MHC_IP_R1	1	588.2040405273438	2	587.803823	1173.59309	-0.13322	-7.831E-05	0.043426	2.5526E-05	-0.089799	-5.2784E-05	587.803947009373	53.835	0.55814	53.835	53.555	54.113	0					18	10	2	0	0	0	0.50484	1	19213	19213		34.932	15.675	1	3079200			19734	6516	14198	14304	19349	19349					0.01323950083155978
HLLERSWYA	9	Unmodified	_HLLERSWYA_					0	0	0		nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1;ENST00000529207.5_1_11:64899759-64900720:-|nuORF;ENST00000449943.5_1_11:64900197-64901072:-|nuORF;ENST00000533685.1_1_11:64900197-64900596:-|nuORF	nc|ENSG00000162298|Q86TM6-2|SYVN1	nc|ENSG00000162298|Q86TM6-2|SYVN1	MULTI-MSMS	A375_MHC_IP_R2	2	588.2037353515625	2	587.803823	1173.59309	-1.0953	-0.0006438	0.11783	6.9259E-05	-0.97744	-0.00057454	587.8041023611586	52.871	0.5079	53.622	53.385	53.893	0.75105					19	9	3	0	0	0	0.31062	1	19973	19973		29.841	12.898	1	2638200			19735	6516	14198	14304	19350	19350					0.01323950083155978
HLLFTDTSSL	10	Unmodified	_HLLFTDTSSL_					0	0	0			REV__nc|ENSG00000186810|P49682-3|CXCR3	REV__nc|ENSG00000186810|P49682-3|CXCR3	MULTI-SECPEP	A375_MHC_IP_R1	1	378.6204528808594	3	378.532756	1132.57644	0.61169	0.00023154	-0.54634	-0.00020681	0.065341	2.4734E-05	378.53250442114523	21.601	0.50789	21.601	21.454	21.962	0					17	9	2	0	0	0	0.91328	1	5817	5817		12.873	3.3286	1	8374100	+		19736	21988	14199	14305	19351	19351					0.015454044065336348
HLLGAAHQLF	10	Unmodified	_HLLGAAHQLF_					0	0	0			REV__ENST00000303521.10_1_15:76673691-77134263:-|nuORF	REV__ENST00000303521.10_1_15:76673691-77134263:-|nuORF	MSMS	A375_MHC_IP_R2	2	369.5977783203125	3	369.541697	1105.60326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.267	1	36.031	35.531	36.531	0.76338								0	0	0	0.15245	1	12778	12778		12.873	1.9736	1		+		19737	19208	14200	14306	19352	19352					0.0546855780835358
HLLGDIGLSL	10	Unmodified	_HLLGDIGLSL_					0	0	0		ENST00000472045.1_1_5:131819645-131819816:-|nuORF	ENST00000472045.1_1_5:131819645-131819816:-|nuORF	ENST00000472045.1_1_5:131819645-131819816:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	519.2105102539062	2	519.303124	1036.5917	-0.83704	-0.00043468	-0.28695	-0.00014901	-1.124	-0.00058369	519.3028553128186	62.27	0.45674	63.013	62.774	63.23	0.74263					21	8	3	0	0	0	0.48072	1	23642	23642		18.146	3.3081	1	3017800			19738	12364	14201	14307	19353	19353					0.07486315994378856
HLLGHLEQA	9	Unmodified	_HLLGHLEQA_					0	0	0		ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071|PRDM15;nc|ENSG00000141956|P57071-6|PRDM15;nc|ENSG00000141956|P57071-5|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	MULTI-SECPEP	A375_MHC_IP_R1	1	509.6765441894531	2	509.277441	1016.54033	-0.49597	-0.00025259	-2.7468	-0.0013989	-3.2428	-0.0016515	509.27539552620436	36.345	0.86443	36.345	35.676	36.541	0					22	16	2	0	0	0	0.053904	1	12167	12167		74.929	42.812	1	2349700			19739	5279	14202	14308	19354	19354					0.032719920203248876
HLLGHLEQA	9	Unmodified	_HLLGHLEQA_					0	0	0		ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071|PRDM15;nc|ENSG00000141956|P57071-6|PRDM15;nc|ENSG00000141956|P57071-5|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	MULTI-MSMS	A375_MHC_IP_R2	2	509.6770935058594	2	509.277441	1016.54033	-0.97941	-0.00049879	-2.3631	-0.0012035	-3.3425	-0.0017023	509.2764882760891	35.242	0.6057	36.005	35.778	36.384	0.76338					19	11	2	0	0	0	0.02559	1	12799	12799		78.728	40.552	1	2375100			19740	5279	14202	14308	19355	19355					0.032719920203248876
HLLLLWRQV	9	Unmodified	_HLLLLWRQV_					0	0	0		ENST00000591348.5_1_1:16810902-16817558:-|nuORF	ENST00000591348.5_1_1:16810902-16817558:-|nuORF	ENST00000591348.5_1_1:16810902-16817558:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	393.9794006347656	3	393.244992	1176.71315	-0.44157	-0.00017365	0.35301	0.00013882	-0.088559	-3.4825E-05	393.24501121351096	41.023	0.40611	41.798	41.54	41.946	0.77451					14	7	3	0	0	0	0.64136	1	15235	15235		12.241	12.241	1	3262600			19741	13799	14203	14309	19356	19356					0.13185983147536717
HLLMMFTKA	9	Unmodified	_HLLMMFTKA_					0	0	0		ENSG00000173950|ENST00000310380|XXYLT1	ENSG00000173950|ENST00000310380|XXYLT1	ENSG00000173950|ENST00000310380|XXYLT1	MSMS	A375_MHC_IP_R2	2	546.2117309570312	2	546.290648	1090.56674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.191	1	36.962	36.462	37.462	0.7709								0	0	0	0.15411	1	13171	13171		14.838	0	1				19742	7845	14204	14310	19357	19357					0.025082215958036613
HLLNESPML	9	Oxidation (M)	_HLLNESPM(Oxidation (M))L_		HLLNESPM(1)L		HLLNESPM(56)L	0	0	1		ENSG00000155561|ENST00000285968|NUP205;ENST00000607647.5_1_7:135285632-135291519:+|nuORF	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	A375_MHC_IP_R1	1	535.2421264648438	2	535.270967	1068.52738	-0.7385	-0.0003953	-0.82595	-0.00044211	-1.5644	-0.0008374	535.2705853976217	58.179	0.65857	58.179	57.873	58.531	0					27	12	3	0	0	0	0.070818	2	20890	20890;20926		56.177	8.4284	1	3327800			19743	6149	14205	14311	19358;19359	19358		328			-0.004142071540854886
HLLPQLGPVL	10	Unmodified	_HLLPQLGPVL_					0	0	0			REV__ENST00000335281.8_1_14:52327279-52327504:+|nuORF	REV__ENST00000335281.8_1_14:52327279-52327504:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	362.61712646484375	3	362.893848	1085.65972	-0.046653	-1.693E-05	0.47642	0.00017289	0.42977	0.00015596	362.89408556155956	63.646	0.25448	64.387	64.292	64.547	0.74022					5	4	2	0	0	0	0.93578	1	24140	24140		5.7834	0.38072	1	420580	+		19744	23669	14206	14312	19360	19360					0.1203118564505985
HLLPSLRQV	9	Unmodified	_HLLPSLRQV_					0	0	0		ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	MULTI-SECPEP	A375_MHC_IP_R1	1	532.22412109375	2	531.824558	1061.63456	-0.58394	-0.00031056	-0.15748	-8.3752E-05	-0.74142	-0.00039431	531.8244586823635	57.441	0.50913	57.441	57.109	57.618	0					17	9	2	0	0	0	0.63327	1	20581	20581		13.042	0	1	3637600			19745	8432	14207	14313	19361	19361					0.10621130842469029
HLLPSLRQV	9	Unmodified	_HLLPSLRQV_					0	0	0		ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	MULTI-SECPEP	A375_MHC_IP_R2	2	532.2239379882812	2	531.824558	1061.63456	-0.96046	-0.00051079	-0.13437	-7.1459E-05	-1.0948	-0.00058225	531.8244465547393	56.258	0.51043	57.008	56.745	57.255	0.75014					19	9	3	0	0	0	0.63327	1	21279	21279		18.146	0	1	2740700			19746	8432	14207	14313	19362	19362					0.10621130842469029
HLLPSRRSV	9	Unmodified	_HLLPSRRSV_					0	0	0		ENSG00000138073|ENST00000260643|PREB	ENSG00000138073|ENST00000260643|PREB	ENSG00000138073|ENST00000260643|PREB	MULTI-SECPEP	A375_MHC_IP_R2	2	532.2164306640625	2	532.819807	1063.62506	-0.69764	-0.00037171	0.42057	0.00022409	-0.27707	-0.00014763	532.8199854120637	124.13	1.1134	124.46	123.84	124.95	0.32969					21	21	2	0	0	0	0.78348	1	47885	47885		4.3292	0	1	12387000			19747	4951	14208	14314	19363	19363					0.09579362556928572
HLLPTQLEV	9	Unmodified	_HLLPTQLEV_					0	0	0		ENSG00000114933|ENST00000403263|INO80D	ENSG00000114933|ENST00000403263|INO80D	ENSG00000114933|ENST00000403263|INO80D	MULTI-SECPEP	A375_MHC_IP_R2	2	525.7025146484375	2	525.303124	1048.5917	-0.4322	-0.00022704	1.0959	0.00057568	0.6637	0.00034864	525.3044946261087	83.694	0.51204	84.434	84.203	84.715	0.73962					18	9	3	0	0	0	0.087712	1	31819	31819		75.761	19.584	1	1713700			19748	3258	14209	14315	19364	19364					0.06934315994362805
HLLQYNHRV	9	Unmodified	_HLLQYNHRV_					0	0	0		ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENSG00000131981|ENST00000254301|LGALS3	ENSG00000131981|ENST00000254301|LGALS3	MULTI-MSMS	A375_MHC_IP_R2	2	394.2840270996094	3	393.884235	1178.63087	-0.49673	-0.00019566	0.1313	5.1718E-05	-0.36543	-0.00014394	393.8842111157151	24.441	0.55745	25.085	24.857	25.414	0.64368					20	10	3	0	0	0	0.034481	1	8058	8058		55.503	28.28	1	8908700			19749	4364	14210	14316	19365	19365					0.04870461068571785
HLLQYNHRV	9	Unmodified	_HLLQYNHRV_					0	0	0		ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENSG00000131981|ENST00000254301|LGALS3	ENSG00000131981|ENST00000254301|LGALS3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	393.884235	1178.63087	0.072424	2.8527E-05	-0.67122	-0.00026438	-0.59879	-0.00023585	393.8840484760302	25.229	0.50877	25.229	25.053	25.562	0	0.072084	-0.00053931	NaN	55.503	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6027200			19750	4364	14210	14316							0.04870461068571785
HLLRKYFI	8	Unmodified	_HLLRKYFI_					0	0	0		ENSG00000154237|ENST00000388948|LRRK1;LRRK1|p.I1366Nfs*21|1|0.31|ENSG00000154237|chr15:101054981-101054982|-/A|frameshift_variant;LRRK1|p.L655Wfs*107|1|0.15|ENSG00000154237|chr15:101022492-101022492|C/-|frameshift_variant;nc|ENSG00000154237|Q38SD2-2|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	MULTI-SECPEP	A375_MHC_IP_R1	1	364.2904357910156	3	363.890438	1088.64948	0.35952	0.00013083	-0.28543	-0.00010386	0.074094	2.6962E-05	363.89037279241364	79.012	0.35423	79.012	78.807	79.161	0					11	6	2	0	0	0	0.972	1	28864	28864		12.532	1.7076	1	1026300			19751	6073	14211	14317	19366	19366					0.10870622710467615
HLLRKYFI	8	Unmodified	_HLLRKYFI_					0	0	0		ENSG00000154237|ENST00000388948|LRRK1;LRRK1|p.I1366Nfs*21|1|0.31|ENSG00000154237|chr15:101054981-101054982|-/A|frameshift_variant;LRRK1|p.L655Wfs*107|1|0.15|ENSG00000154237|chr15:101022492-101022492|C/-|frameshift_variant;nc|ENSG00000154237|Q38SD2-2|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	MULTI-MSMS	A375_MHC_IP_R2	2	364.2900390625	3	363.890438	1088.64948	-0.051181	-1.8624E-05	-0.93489	-0.0003402	-0.98607	-0.00035882	363.8901514035943	77.842	0.41023	78.585	78.416	78.827	0.74293					13	7	2	0	0	0	0.7754	1	29595	29595		11.64	0.81637	1	1836500			19752	6073	14211	14317	19367	19367					0.10870622710467615
HLLRWRLL	8	Unmodified	_HLLRWRLL_					0	0	0			REV__nc|ENSG00000226807|Q6ZUA9|MROH5	REV__nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-SECPEP	A375_MHC_IP_R1	1	553.1691284179688	2	553.85091	1105.68727	-0.55501	-0.00030739	0.12505	6.9257E-05	-0.42996	-0.00023814	554.3528179396554	75.551	0.50281	75.551	75.312	75.815	0					11	9	2	0	0	0	0.972	1	27487	27487		2.8892	0	1	1305600	+		19753	27507	14212	14318	19368	19368					0.13865133695935583
HLLSAISSV	9	Unmodified	_HLLSAISSV_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-SECPEP	A375_MHC_IP_R1	1	464.1687927246094	2	463.768917	925.523281	-0.010687	-4.9563E-06	-0.051547	-2.3906E-05	-0.062234	-2.8862E-05	463.7687316531245	71.942	0.70798	71.942	71.715	72.423	0					23	13	2	0	0	0	0.016207	1	26163	26163		109.63	42.285	1	3391200			19754	1156	14213	14319	19369	19369					0.05754071414514783
HLLSAISSV	9	Unmodified	_HLLSAISSV_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-SECPEP	A375_MHC_IP_R2	2	464.16864013671875	2	463.768917	925.523281	-0.69511	-0.00032237	-0.23444	-0.00010872	-0.92955	-0.00043109	463.7686933932773	70.877	0.96147	71.611	71.302	72.264	0.73421					27	18	2	0	0	0	0.043556	1	26893	26893		89.427	57.121	1	3069400			19755	1156	14213	14319	19370	19370					0.05754071414514783
HLLSDELLL	9	Unmodified	_HLLSDELLL_					0	0	0		ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	MULTI-SECPEP	A375_MHC_IP_R1	1	527.2026977539062	2	526.802957	1051.59136	-0.33736	-0.00017772	0.045919	2.419E-05	-0.29144	-0.00015353	526.8029479784517	110.45	0.86507	110.45	110.09	110.95	0					25	16	2	0	0	0	0.12259	1	40476	40476		63.563	7.0216	1	1902700			19756	900	14214	14320	19371	19371					0.06762896274517516
HLLSDELLL	9	Unmodified	_HLLSDELLL_					0	0	0		ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	MULTI-SECPEP	A375_MHC_IP_R2	2	527.2022705078125	2	526.802957	1051.59136	-0.35525	-0.00018714	-0.018235	-9.6061E-06	-0.37348	-0.00019675	526.802839403692	109.45	0.9138	110.2	109.88	110.79	0.74683					32	17	3	0	0	0	0.12259	1	41317	41317		63.563	7.0216	1	2066500			19757	900	14214	14320	19372	19372					0.06762896274517516
HLLSEGFH	8	Unmodified	_HLLSEGFH_					0	0	0		KIAA1958|p.S40F|1|0.39|ENSG00000165185|chr9:112574199-112574199|C/T|missense_variant	KIAA1958|p.S40F|1|0.39|ENSG00000165185|chr9:112574199-112574199|C/T|missense_variant	KIAA1958|p.S40F|1|0.39|ENSG00000165185|chr9:112574199-112574199|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	470.1464538574219	2	470.237784	938.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.446	1	23.065	22.565	23.565	0.61932								0	0	0	0.16876	1	7131	7131		10.183	0.83596	1				19758	14209	14215	14321	19373	19373					-0.01067654933808626
HLLSTVTSI	9	Unmodified	_HLLSTVTSI_					0	0	0		nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1;ENSG00000127946|ENST00000336926|HIP1	nc|ENSG00000127946|O00291-3|HIP1	nc|ENSG00000127946|O00291-3|HIP1	MSMS	A375_MHC_IP_R2	2	486.1812438964844	2	485.782025	969.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.817	1	71.551	71.051	72.051	0.73421								0	0	0	0.02291	1	26850	26850		85.357	21.12	1				19759	4110	14216	14322	19374	19374					0.06350340586004677
HLLWGDAPV	9	Unmodified	_HLLWGDAPV_					0	0	0			REV__ENST00000361490.8_1_10:100184114-100185647:-|nuORF	REV__ENST00000361490.8_1_10:100184114-100185647:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	504.6983642578125	2	504.269084	1006.52362	-0.48934	-0.00024676	-3.4987	-0.0017643	-3.9881	-0.0020111	504.267479388625	80.82	0.50896	80.82	80.744	81.253	0					10	9	2	0	0	0	0.77244	1	29565	29565		2.3027	0	1	812110	+		19760	23914	14217	14323	19375	19375					0.020614911343727726
HLMFRRLI	8	Unmodified	_HLMFRRLI_					0	0	0			REV__ENST00000475441.5_1_1:28905087-28907099:-|nuORF	REV__ENST00000475441.5_1_1:28905087-28907099:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	543.7316284179688	2	543.323671	1084.63279	-0.10965	-5.9576E-05	0.65469	0.00035571	0.54504	0.00029613	543.3239135824874	45.157	0.25449	45.157	44.98	45.234	0					6	4	2	0	0	0	0.972	1	15747	15747		5.7604	5.4098	1	1087900	+		19761	25165	14218	14324	19376	19376					0.09385798552875713
HLMLDHIPQ	9	Unmodified	_HLMLDHIPQ_					0	0	0		nc|ENSG00000147485|A1KZ92-2|PXDNL;ENSG00000147485|ENST00000356297|PXDNL	nc|ENSG00000147485|A1KZ92-2|PXDNL	nc|ENSG00000147485|A1KZ92-2|PXDNL	MULTI-SECPEP	A375_MHC_IP_R1	1	552.6442260742188	2	552.286951	1102.55935	-0.48377	-0.00026718	4.0124	0.002216	3.5286	0.0019488	552.2895233355382	40.45	0.66218	40.45	40.05	40.712	0					19	12	2	0	0	0	0.63327	1	13831	13831		24.021	4.5816	1	2215800			19762	5688	14219	14325	19377	19377					0.012172053197446076
HLNALPETSNV	11	Unmodified	_HLNALPETSNV_					0	0	0		tr|U7SX87|U7SX87_FUSNUFructose-bisphosphatealdolaseclass1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fdaPE=3SV=1	tr|U7SX87|U7SX87_FUSNUFructose-bisphosphatealdolaseclass1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fdaPE=3SV=1	tr|U7SX87|U7SX87_FUSNUFructose-bisphosphatealdolaseclass1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fdaPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	398.1478576660156	3	398.875293	1193.60405	0.22098	8.8144E-05	2.8895	0.0011526	3.1105	0.0012407	399.2111121987639	45.221	0.50435	45.221	44.98	45.484	0					20	9	3	0	0	0	0.99246	1	15843	15843		10.899	6.0019	1	1391200			19763	29823	14220	14326	19378	19378					0.014993076667678906
HLNAVIIHL	9	Unmodified	_HLNAVIIHL_					0	0	0			REV__OR52N5|p.Y290H|1|0.33|ENSG00000181009|chr11:5777767-5777767|A/G|missense_variant	REV__OR52N5|p.Y290H|1|0.33|ENSG00000181009|chr11:5777767-5777767|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	514.6945190429688	2	515.313826	1028.6131	-1.0718	-0.00055229	0.085571	4.4096E-05	-0.98619	-0.0005082	515.8153439387451	58.388	0.15477	59.137	59.032	59.187	0.74894					4	2	2	0	0	0	0.73662	1	22070	22070		9.3474	0	1	466600	+		19764	27684	14221	14327	19379	19379					0.09993745813767418
HLPDAAALLPV	11	Unmodified	_HLPDAAALLPV_					0	0	0		ENST00000292591.11_1_5:179228908-179233794:-|nuORF	ENST00000292591.11_1_5:179228908-179233794:-|nuORF	ENST00000292591.11_1_5:179228908-179233794:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	559.2244873046875	2	558.824224	1115.63389	-0.32886	-0.00018378	-1.3666	-0.00076367	-1.6954	-0.00094745	558.8230272862424	106.5	0.76767	106.5	106.16	106.93	0					29	14	3	0	0	0	0.88944	1	39080	39080		27.629	27.629	1	2787000			19765	10478	14222	14328	19380	19380					0.08070291402736984
HLPDFVKQL	9	Unmodified	_HLPDFVKQL_					0	0	0		ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	A375_MHC_IP_R1	1	549.2110595703125	2	548.811116	1095.60768	-0.34454	-0.00018909	0.0038116	2.0918E-06	-0.34072	-0.00018699	548.811086470526	70.193	3.7557	70.193	69.631	73.386	0					139	73	5	0	0	0	0.0111	1	25397	25397		114.2	61.933	1	42630000			19766	4718	14223	14329	19381	19381					0.0637002223129457
HLPDFVKQL	9	Unmodified	_HLPDFVKQL_					0	0	0		ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	A375_MHC_IP_R2	2	549.2098999023438	2	548.811116	1095.60768	-0.69438	-0.00038108	0.0020713	1.1368E-06	-0.69231	-0.00037995	548.81103313251	69.322	1.9289	70.056	69.574	71.503	0.73421					104	37	6	0	0	0	0.0111	2	26196	26196;26629		114.2	61.933	1	55075000			19767	4718	14223	14329	19382;19383	19382					0.0637002223129457
HLPDGSVTV	9	Unmodified	_HLPDGSVTV_					0	0	0		nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENST00000470030.6_1_1:1247241-1248711:-|nuORF	nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	MULTI-SECPEP	A375_MHC_IP_R1	1	463.14312744140625	2	462.742899	923.471246	-0.14638	-6.7737E-05	-0.21571	-9.9819E-05	-0.36209	-0.00016756	462.74286706630664	42.345	0.70634	42.345	41.932	42.638	0					19	13	2	0	0	0	0.14105	1	14647	14647		60.39	18.295	1	2488400			19768	4074	14224	14330	19384	19384					0.006449080007769226
HLPDGSVTV	9	Unmodified	_HLPDGSVTV_					0	0	0		nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENST00000470030.6_1_1:1247241-1248711:-|nuORF	nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	MULTI-SECPEP	A375_MHC_IP_R2	2	463.1429138183594	2	462.742899	923.471246	-0.65534	-0.00030326	0.43024	0.00019909	-0.22511	-0.00010417	462.7430323177934	41.483	0.60998	42.257	41.997	42.607	0.77451					19	11	2	0	0	0	0.14105	1	15392	15392		60.39	15.983	1	2968400			19769	4074	14224	14330	19385	19385					0.006449080007769226
HLPFQRHLD	9	Unmodified	_HLPFQRHLD_					0	0	0			REV__ENST00000529132.1_1_11:67172517-67173239:+|nuORF	REV__ENST00000529132.1_1_11:67172517-67173239:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	581.1661987304688	2	581.809439	1161.60433	-0.10405	-6.054E-05	-1.3205	-0.00076826	-1.4245	-0.0008288	581.8090968810886	82.69	0.30342	82.69	82.571	82.874	0					10	5	2	0	0	0	0.73363	1	30305	30305		15.847	1.9411	1	1332000	+		19770	21346	14225	14331	19386	19386					0.02998772177261344
HLPPQPQLH	9	Unmodified	_HLPPQPQLH_					0	0	0			REV__TCF7|p.P141L|1|0.35|ENSG00000081059|chr5:134116014-134116014|C/T|missense_variant	REV__TCF7|p.P141L|1|0.35|ENSG00000081059|chr5:134116014-134116014|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	355.5820007324219	3	356.197931	1065.57196	0.086156	3.0689E-05	0.29242	0.00010416	0.37857	0.00013485	356.19798846996207	43.56	0.25429	43.56	43.4	43.655	0					7	4	2	0	0	0	0.77244	1	15188	15188		1.1933	0	1	1488500	+		19771	28085	14226	14332	19387	19387					0.04179984774282275
HLPPVSMA	8	Unmodified	_HLPPVSMA_					0	0	0		nc|ENSG00000082805|Q8IUD2-5|ERC1;nc|ENSG00000082805|Q8IUD2-4|ERC1;nc|ENSG00000082805|Q8IUD2-2|ERC1;nc|ENSG00000082805|Q8IUD2-3|ERC1;ENSG00000082805|ENST00000360905|ERC1	nc|ENSG00000082805|Q8IUD2-5|ERC1	nc|ENSG00000082805|Q8IUD2-5|ERC1	MULTI-SECPEP	A375_MHC_IP_R2	2	426.6103515625	2	426.225831	850.437109	-0.18871	-8.0432E-05	0.49084	0.00020921	0.30213	0.00012877	426.226175535098	31.843	0.20191	32.58	32.453	32.654	0.73692					5	3	2	0	0	0	0.94479	1	11305	11305		4.756	0	1	983350			19772	1767	14227	14333	19388	19388					0.005907883081590626
HLPSDFTPA	9	Unmodified	_HLPSDFTPA_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	A375_MHC_IP_R1	1	493.142822265625	2	492.742899	983.471246	-0.32384	-0.00015957	0.19942	9.8264E-05	-0.12442	-6.1307E-05	492.7429584290786	50.501	2.7983	50.501	49.793	52.592	0					122	54	3	0	0	0	0.050162	2	17948	17717;17948		64.236	22.142	1	29305000		+	19773	579	14228	14334	19389;19390	19390					-0.02115091999246488
HLPSDFTPA	9	Unmodified	_HLPSDFTPA_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	A375_MHC_IP_R2	2	493.14263916015625	2	492.742899	983.471246	-0.75597	-0.0003725	0.38023	0.00018735	-0.37574	-0.00018514	492.7430360854079	49.768	2.7878	50.522	49.738	52.526	0.75406					127	54	3	0	0	0	0.12592	1	18706	18706		46.021	3.9264	1	35137000		+	19774	579	14228	14334	19391	19391					-0.02115091999246488
HLPSHIRIL	9	Unmodified	_HLPSHIRIL_					0	0	0		nc|ENSG00000177192|Q9Y606-2|PUS1;ENSG00000177192|ENST00000376649|PUS1	nc|ENSG00000177192|Q9Y606-2|PUS1	nc|ENSG00000177192|Q9Y606-2|PUS1	MULTI-MSMS	A375_MHC_IP_R2	2	362.95733642578125	3	362.557459	1084.65055	0.044137	1.6002E-05	-0.42216	-0.00015306	-0.37803	-0.00013706	362.5572582552858	43.735	2.3307	44.505	44.076	46.407	0.7691					89	45	4	0	0	0	0.0020209	2	16266	16266;16354		143.91	56.651	1	22999000			19775	8068	14229	14335	19392;19393	19392					0.11160837079364683
HLPWRVHWPFL	11	Unmodified	_HLPWRVHWPFL_					0	0	0		ENST00000263388.6_1_19:15295119-15295215:-|nuORF	ENST00000263388.6_1_19:15295119-15295215:-|nuORF	ENST00000263388.6_1_19:15295119-15295215:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	496.33807373046875	3	496.606813	1486.79861	-0.6334	-0.00031455	0.60245	0.00029918	-0.030952	-1.5371E-05	496.60702048005834	132.67	0.20412	132.67	132.59	132.79	0					6	3	2	0	0	0	1.0014	1	51141	51141		0.094841	0	1	1649500			19776	10319	14230	14336	19394	19394					0.0746814833321423
HLQDSEGPY	9	Unmodified	_HLQDSEGPY_					0	0	0		ENST00000554257.1_1_14:38368438-38371223:-|nuORF	ENST00000554257.1_1_14:38368438-38371223:-|nuORF	ENST00000554257.1_1_14:38368438-38371223:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	523.7033081054688	2	523.232896	1044.45124	-0.48725	-0.00025495	0.94147	0.00049261	0.45422	0.00023766	523.2333904140156	31.37	0.35426	31.37	31.262	31.616	0					10	6	2	0	0	0	0.61998	1	10047	10047		13.906	0	1	1013000			19777	13416	14231	14337	19395	19395					-0.06920887729847891
HLQIKWRVWMW	11	Unmodified	_HLQIKWRVWMW_					0	0	0		ENST00000351223.7_1_1:46049867-46067967:+|nuORF	ENST00000351223.7_1_1:46049867-46067967:+|nuORF	ENST00000351223.7_1_1:46049867-46067967:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	792.327392578125	2	791.926823	1581.83909	-0.024533	-1.9428E-05	-0.23478	-0.00018593	-0.25932	-0.00020536	791.9272290733072	126.73	0.70844	126.73	126.46	127.16	0					28	13	4	0	0	0	0.73779	1	48448	48448		1.4819	0.28856	1	95328000			19778	10926	14232	14338	19396	19396					0.07144746661310819
HLQLDATSV	9	Unmodified	_HLQLDATSV_					0	0	0		nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	MULTI-SECPEP	A375_MHC_IP_R1	1	492.3465881347656	2	492.261456	982.50836	-0.34166	-0.00016819	0.25966	0.00012782	-0.081998	-4.0365E-05	492.2616524513721	52.278	0.45601	52.278	52.085	52.541	0					13	8	2	0	0	0	0.75466	1	18572	18572		4.3292	0.38484	1	1154600			19779	1429	14233	14339	19397	19397					0.016405795465288975
HLQLKQLGET	10	Unmodified	_HLQLKQLGET_					0	0	0			REV__ZFHX4|p.R1078Q|2|0.12|ENSG00000091656|chr8:76778347-76778347|G/A|missense_variant	REV__ZFHX4|p.R1078Q|2|0.12|ENSG00000091656|chr8:76778347-76778347|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	389.955810546875	3	389.555784	1165.64552	0.34801	0.00013557	-0.018321	-7.1372E-06	0.32969	0.00012843	389.5557584342586	20.818	0.71394	20.818	20.587	21.301	0					19	13	2	0	0	0	0.70565	1	5399	5399		9.7643	0	1	5329600	+		19780	29019	14234	14340	19398	19398					0.06932488426082273
HLQQVALPLV	10	Unmodified	_HLQQVALPLV_					0	0	0		ENSG00000141086|ENST00000574481|CTRL;ENST00000575231.1_1_16:67963850-67964919:-|nuORF	ENSG00000141086|ENST00000574481|CTRL	ENSG00000141086|ENST00000574481|CTRL	MSMS	A375_MHC_IP_R1	1	373.2685852050781	3	373.229119	1116.66553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.669	1	39.669	39.169	40.169	0								0	0	0	0.15398	1	13580	13580		4.1895	1.691	1				19781	5214	14235	14341	19399	19399					0.11186284156701731
HLQSLRHVL	9	Unmodified	_HLQSLRHVL_					0	0	0		ENST00000444836.5_1_1:12072009-12072201:+|nuORF	ENST00000444836.5_1_1:12072009-12072201:+|nuORF	ENST00000444836.5_1_1:12072009-12072201:+|nuORF	MSMS	A375_MHC_IP_R2	2	368.5770263671875	3	368.220847	1101.64071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.035	1	39.809	39.309	40.309	0.77451								0	0	0	0.15486	1	14396	14396		2.7352	0.23671	1				19782	12022	14236	14342	19400	19400					0.09395649073985624
HLRDRAFLK	9	Unmodified	_HLRDRAFLK_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;ENST00000479213.1_1_6:131914123-131917288:-|nuORF	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-MSMS	A375_MHC_IP_R2	2	386.2961120605469	3	385.896363	1154.66726	-0.57765	-0.00022291	0.32847	0.00012676	-0.24918	-9.6156E-05	385.8964215219012	33.548	0.50765	34.3	33.992	34.5	0.75225					15	9	2	0	0	0	0.57432	1	12053	12053		11.518	1.9739	1	3544000			19783	3067	14237	14343	19401	19401					0.09611337965293387
HLRGLFCVSI	10	Unmodified	_HLRGLFCVSI_					0	0	0		ENST00000472714.1_1_7:107569804-107570089:-|nuORF	ENST00000472714.1_1_7:107569804-107570089:-|nuORF	ENST00000472714.1_1_7:107569804-107570089:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	572.134521484375	2	572.818418	1143.62228	-0.26106	-0.00014954	0.45937	0.00026314	0.19831	0.00011359	572.8193872550328	34.153	0.35292	34.153	33.95	34.303	0					8	6	2	0	0	0	0.9269	1	11157	11157		10.824	6.4947	1	962610			19784	12377	14238	14344	19402	19402					0.0562177110778066
HLRHPNIL	8	Unmodified	_HLRHPNIL_					0	0	0		ENSG00000087586|ENST00000395915|AURKA;chr20:56390665-56392154|459|12.33|0.64|4.27|-|ENST00000441357|AURKA,AURKA	ENSG00000087586|ENST00000395915|AURKA	ENSG00000087586|ENST00000395915|AURKA	MULTI-SECPEP	A375_MHC_IP_R1	1	500.7008361816406	2	500.295968	998.577383	-0.50392	-0.00025211	-2.6712	-0.0013364	-3.1752	-0.0015885	500.7956369305966	27.152	0.50572	27.152	27.027	27.533	0					13	9	2	0	0	0	0.73517	1	8158	8158		26.341	11.76	1	1537500			19785	1879	14239	14345	19403	19403					0.07803708356743755
HLRHRWVKNRW	11	Unmodified	_HLRHRWVKNRW_					0	0	0			REV__ENST00000583079.1_1_17:18023566-18025792:+|nuORF	REV__ENST00000583079.1_1_17:18023566-18025792:+|nuORF	MSMS	A375_MHC_IP_R2	2	529.7247924804688	3	529.967515	1586.88072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.3	1	131.49	130.99	131.99	0.18953								0	0	0	0.1635	1	51648	51648		0.50596	0.41111	1		+		19786	26361	14240	14346	19404	19404					0.11075063464863888
HLRIIILEG	9	Unmodified	_HLRIIILEG_					0	0	0			REV__ENSG00000179477|ENST00000647874|ALOX12B	REV__ENSG00000179477|ENST00000647874|ALOX12B	MULTI-MSMS	A375_MHC_IP_R2	2	1063.566162109375	1	1063.66224	1062.65496	-0.13641	-0.0001451	4.3416	0.004618	4.2052	0.0044729	1063.6657945272134	40.8	0.20266	41.575	41.489	41.692	0.77451					5	3	2	0	0	0	0.75523	1	15087	15087		2.0598	0	1	1672100	+		19787	21566	14241	14347	19405	19405					0.12614301502298986
HLRKVLVGG	9	Unmodified	_HLRKVLVGG_					0	0	0			REV__ENST00000531756.5_1_11:74862426-74914042:+|nuORF	REV__ENST00000531756.5_1_11:74862426-74914042:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	979.0220336914062	1	978.62071	977.613434	-0.11084	-0.00010847	0.80028	0.00078317	0.68944	0.0006747	978.6218450351369	26.478	2.1758	26.478	25.104	27.28	0					50	42	2	0	0	0	0.81896	1	7627	7627		0	0	1	3116500	+		19788	19011	14242	14348	19406	19406					0.12373165533631436
HLRKVLVS	8	Unmodified	_HLRKVLVS_					0	0	0			REV__nc|ENSG00000119004|Q6UW02-2|CYP20A1	REV__nc|ENSG00000119004|Q6UW02-2|CYP20A1	MULTI-MSMS	A375_MHC_IP_R1	1	476.7079772949219	2	476.308544	950.602535	-0.88029	-0.00041929	0.25524	0.00012157	-0.62505	-0.00029772	476.30850962842464	147.55	0.34648	147.55	147.39	147.74	0					77	33	4	0	0	0	0.77842	1	56361	56361		0.69038	0	1	788260	+		19789	18060	14243	14349	19407	19407					0.1252576315933993
HLRQRRHHRRW	11	Unmodified	_HLRQRRHHRRW_					0	0	0		ENSG00000132716|ENST00000368074|DCAF8	ENSG00000132716|ENST00000368074|DCAF8	ENSG00000132716|ENST00000368074|DCAF8	MULTI-SECPEP	A375_MHC_IP_R1	1	410.63641357421875	4	410.235979	1636.91481	0.10688	4.3845E-05	0.65706	0.00026955	0.76394	0.0003134	410.236347227737	42.31	0.60525	42.31	41.982	42.587	0					29	11	4	0	0	0	0.99847	1	14642	14642		5.0475	3.8327	1	6985100			19790	4443	14244	14350	19408	19408					0.12182904676478756
HLRQRRHHRRW	11	Unmodified	_HLRQRRHHRRW_					0	0	0		ENSG00000132716|ENST00000368074|DCAF8	ENSG00000132716|ENST00000368074|DCAF8	ENSG00000132716|ENST00000368074|DCAF8	MULTI-SECPEP	A375_MHC_IP_R2	2	410.6363220214844	4	410.235979	1636.91481	-0.17993	-7.3814E-05	0.71807	0.00029458	0.53814	0.00022076	410.2362423950412	41.341	0.45541	42.116	41.895	42.35	0.77451					18	8	3	0	0	0	0.99883	1	15329	15329		2.6312	1.4164	1	7627400			19791	4443	14244	14350	19409	19409					0.12182904676478756
HLRQRSTLS	9	Unmodified	_HLRQRSTLS_					0	0	0		ENST00000481453.5_1_16:419744-420512:-|nuORF	ENST00000481453.5_1_16:419744-420512:-|nuORF	ENST00000481453.5_1_16:419744-420512:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	549.1917114257812	2	549.312346	1096.61014	-0.54267	-0.00029809	-1.2447	-0.00068373	-1.7874	-0.00098183	549.3120487241456	74.342	0.86161	74.342	73.792	74.653	0					19	16	2	0	0	0	0.67483	1	27058	27058		14.838	5.4908	1	1372400			19792	12514	14245	14351	19410	19410					0.0656987068896342
HLRRYNLR	8	Unmodified	_HLRRYNLR_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;NBEAL1|p.S2548Lfs*29|1|0.72|ENSG00000144426|chr2:203209266-203209266|T/-|frameshift_variant;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	A375_MHC_IP_R1	1	564.7298583984375	2	564.330873	1126.64719	-0.17362	-9.7978E-05	-0.98272	-0.00055458	-1.1563	-0.00065256	564.3302395294861	38.704	0.45665	38.704	38.526	38.983	0					12	8	2	0	0	0	0.77752	1	13220	13220		5.7604	5.7604	1	2245200			19793	5485	14246	14352	19411	19411					0.08893587025340821
HLRSYKYYLES	11	Unmodified	_HLRSYKYYLES_					0	0	0		ENSG00000187021|ENST00000358834|PNLIPRP1	ENSG00000187021|ENST00000358834|PNLIPRP1	ENSG00000187021|ENST00000358834|PNLIPRP1	MULTI-SECPEP	A375_MHC_IP_R1	1	487.3590393066406	3	486.917381	1457.73031	-0.50786	-0.00024729	-0.40905	-0.00019917	-0.91691	-0.00044646	486.9187209366077	133.15	0.25549	133.15	132.95	133.2	0					6	4	2	0	0	0	1.0007	1	51341	51341		1.0136	0	1	1349000			19794	8801	14247	14353	19412	19412					0.019758141720558342
HLRTHTEEK	9	Unmodified	_HLRTHTEEK_					0	0	0		ENSG00000130818|ENST00000253115|ZNF426	ENSG00000130818|ENST00000253115|ZNF426	ENSG00000130818|ENST00000253115|ZNF426	MULTI-SECPEP	A375_MHC_IP_R1	1	384.28631591796875	3	384.203633	1149.58907	0.34857	0.00013392	0.4117	0.00015818	0.76027	0.0002921	384.20419997118046	28.503	0.55693	28.503	28.188	28.745	0					15	10	3	0	0	0	0.67483	1	8740	8740		6.6304	0.0069188	1	2128800			19795	4285	14248	14354	19413	19413					0.02025860589401418
HLRYWLHYLHP	11	Unmodified	_HLRYWLHYLHP_					0	0	0		nc|ENSG00000117411|O60909-2|B4GALT2;ENSG00000117411|ENST00000372324|B4GALT2;nc|ENSG00000117411|O60909-3|B4GALT2	nc|ENSG00000117411|O60909-2|B4GALT2	nc|ENSG00000117411|O60909-2|B4GALT2	MSMS	A375_MHC_IP_R2	2	767.9037475585938	2	767.906945	1533.79934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.643	1	88.375	87.875	88.875	0.7318								0	0	0	0.16302	1	33337	33337		2.9952	1.6657	1				19796	3482	14249	14355	19414	19414					0.053789429822700185
HLSDALVEV	9	Unmodified	_HLSDALVEV_					0	0	0			REV__ENSG00000243646|ENST00000290200|IL10RB	REV__ENSG00000243646|ENST00000290200|IL10RB	MULTI-SECPEP	A375_MHC_IP_R1	1	491.6713562011719	2	491.763832	981.513111	-0.35583	-0.00017499	-0.056807	-2.7936E-05	-0.41264	-0.00020292	491.76378887127106	64.267	1.7275	64.267	63.939	65.666	0					70	33	4	0	0	0	0.040439	1	23235	23235		92.822	0	1	14616000	+		19797	22809	14250	14356	19415	19415					0.021614636892991257
HLSDALVEV	9	Unmodified	_HLSDALVEV_					0	0	0			REV__ENSG00000243646|ENST00000290200|IL10RB	REV__ENSG00000243646|ENST00000290200|IL10RB	MULTI-SECPEP	A375_MHC_IP_R2	2	492.1634216308594	2	491.763832	981.513111	-0.468	-0.00023015	-0.29908	-0.00014708	-0.76708	-0.00037722	491.7636348340793	63.4	1.3204	64.14	63.785	65.106	0.74022					60	25	4	0	0	0	0.023756	1	23988	23988		104.8	0	1	12580000	+		19798	22809	14250	14356	19416	19416					0.021614636892991257
HLSDREFVFK	10	Unmodified	_HLSDREFVFK_					0	0	0		ENST00000533200.5_1_11:43904193-43919192:+|nuORF;nc|ENSG00000166199|Q96Q83-2|ALKBH3;ENSG00000166199|ENST00000302708|ALKBH3	ENST00000533200.5_1_11:43904193-43919192:+|nuORF	ENST00000533200.5_1_11:43904193-43919192:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	426.62451171875	3	426.559417	1276.65642	-0.12497	-5.3305E-05	-0.17519	-7.4731E-05	-0.30016	-0.00012804	426.5593515518746	74.478	0.30462	74.478	74.349	74.653	0					7	5	2	0	0	0	0.71455	1	27101	27101		5.7834	0.26014	1	536190			19799	7041	14251	14357	19417	19417					0.029158908003637407
HLSELNTKL	9	Unmodified	_HLSELNTKL_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-SECPEP	A375_MHC_IP_R1	1	528.1979370117188	2	527.798206	1053.58186	-0.31126	-0.00016428	-0.34588	-0.00018255	-0.65714	-0.00034684	527.7980351605214	35.725	0.91747	35.725	35.116	36.033	0					29	17	3	0	0	0	0.049608	1	11886	11886		84.522	12.814	1	3128700			19800	5505	14252	14358	19418	19418					0.05721127988999797
HLSELNTKL	9	Unmodified	_HLSELNTKL_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-SECPEP	A375_MHC_IP_R2	2	528.1978149414062	2	527.798206	1053.58186	-0.70008	-0.0003695	0.020391	1.0762E-05	-0.67969	-0.00035874	527.7980672947742	34.769	0.50513	35.533	35.324	35.829	0.76338					15	9	2	0	0	0	0.47674	1	12611	12611		36.506	5.2379	1	2652300			19801	5505	14252	14358	19419	19419					0.05721127988999797
HLSERADWQY	10	Unmodified	_HLSERADWQY_					0	0	0		ENSG00000136379|ENST00000258884|ABHD17C;nc|ENSG00000136379|Q6PCB6-2|ABHD17C;ENSG00000107362|ENST00000333421|ABHD17B;nc|ENSG00000107362|Q5VST6-2|ABHD17B	ENSG00000136379|ENST00000258884|ABHD17C;ENSG00000107362|ENST00000333421|ABHD17B	ENSG00000136379|ENST00000258884|ABHD17C	MULTI-SECPEP	A375_MHC_IP_R1	1	653.204345703125	2	652.804551	1303.59455	-0.4204	-0.00027444	-0.0059083	-3.8569E-06	-0.42631	-0.0002783	652.8046823581515	37.095	0.45533	37.095	36.845	37.301	0					15	8	3	0	0	0	0.79749	1	12508	12508		27.223	11.975	1	3197700			19802	4783;2736	14253	14359	19420	19420					-0.04510460618757861
HLSERADWQY	10	Unmodified	_HLSERADWQY_					0	0	0		ENSG00000136379|ENST00000258884|ABHD17C;nc|ENSG00000136379|Q6PCB6-2|ABHD17C;ENSG00000107362|ENST00000333421|ABHD17B;nc|ENSG00000107362|Q5VST6-2|ABHD17B	ENSG00000136379|ENST00000258884|ABHD17C;ENSG00000107362|ENST00000333421|ABHD17B	ENSG00000136379|ENST00000258884|ABHD17C	MULTI-SECPEP	A375_MHC_IP_R2	2	652.5032348632812	2	652.804551	1303.59455	-0.94081	-0.00061416	0.054281	3.5435E-05	-0.88653	-0.00057873	652.8044928434327	36.291	0.45872	37.062	36.85	37.308	0.7709					12	8	2	0	0	0	0.90144	1	13250	13250		13.615	1.3742	1	3367100			19803	4783;2736	14253	14359	19421	19421					-0.04510460618757861
HLSFQGLK	8	Unmodified	_HLSFQGLK_					0	0	0		nc|ENSG00000174837|Q14246-2|ADGRE1;nc|ENSG00000174837|Q14246-3|ADGRE1;ENSG00000174837|ENST00000312053|ADGRE1;ADGRE1|p.S218L|1|0.47|ENSG00000174837|chr19:6902013-6902013|C/T|missense_variant	nc|ENSG00000174837|Q14246-2|ADGRE1	nc|ENSG00000174837|Q14246-2|ADGRE1	MULTI-MSMS	A375_MHC_IP_R2	2	930.3789672851562	1	929.520328	928.513051	-0.3204	-0.00029782	-1.9538	-0.0018161	-2.2742	-0.0021139	929.5187864891332	106.42	0.25497	107.18	107.09	107.34	0.75977					6	4	2	0	0	0	0.7773	1	40226	40226		4.756	0	1	799500			19804	7905	14254	14360	19422	19422					0.04593508479956654
HLSIINEYL	9	Unmodified	_HLSIINEYL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	551.7007446289062	2	551.300581	1100.58661	-0.51671	-0.00028486	0.47373	0.00026117	-0.04298	-2.3695E-05	551.3007982253786	96.2	1.9277	96.2	95.917	97.845	0					87	37	4	0	0	0	0.05217	1	35374	35374		112.59	34.609	1	14774000			19805	5172	14255	14361	19423	19423					0.04034012131751297
HLSIINEYL	9	Unmodified	_HLSIINEYL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	A375_MHC_IP_R2	2	551.7000122070312	2	551.300581	1100.58661	-0.59417	-0.00032757	0.21238	0.00011708	-0.38179	-0.00021048	551.3006133883594	95.298	1.5275	96.048	95.684	97.211	0.75045					70	29	4	0	0	0	0.0090669	2	36248	36146;36248		100.37	33.028	1	10463000			19806	5172	14255	14361	19424;19425	19425					0.04034012131751297
HLSISRLNPF	10	Unmodified	_HLSISRLNPF_					0	0	0			REV__ENST00000533134.1_1_11:120924418-120928239:+|nuORF	REV__ENST00000533134.1_1_11:120924418-120928239:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	394.6242370605469	3	395.224257	1182.65094	0.064104	2.5335E-05	-1.9429	-0.00076789	-1.8788	-0.00074256	395.224573069374	42.216	0.75741	42.216	41.932	42.689	0					18	14	2	0	0	0	0.93733	1	14792	14792		5.4027	1.8157	1	1081100	+		19807	19863	14256	14362	19426	19426					0.06692212008556453
HLSLETLTAF	10	Unmodified	_HLSLETLTAF_					0	0	0		ENSG00000213906|ENST00000533293|LTB4R2	ENSG00000213906|ENST00000533293|LTB4R2	ENSG00000213906|ENST00000533293|LTB4R2	MULTI-SECPEP	A375_MHC_IP_R1	1	565.6267700195312	2	566.305864	1130.59717	-0.38605	-0.00021862	0.11841	6.7057E-05	-0.26764	-0.00015157	566.3059695385102	34.027	0.60547	34.027	33.748	34.353	0					18	11	2	0	0	0	0.78945	1	11121	11121		25.399	11.493	1	3287600			19808	9588	14257	14363	19427	19427					0.03709994786186144
HLSLKVLGLLK	11	Unmodified	_HLSLKVLGLLK_					0	0	0			REV__C2CD3|p.P902S|1|0.09|ENSG00000168014|chr11:74100553-74100553|G/A|missense_variant	REV__C2CD3|p.P902S|1|0.09|ENSG00000168014|chr11:74100553-74100553|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	611.0222778320312	2	610.908091	1219.80163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.322	1	88.055	87.555	88.555	0.733								0	0	0	0.16334	1	33208	33208		1.3295	0.13619	1		+		19809	15540	14258	14364	19428	19428					0.20051978667356707
HLSLPRTRI	9	Unmodified	_HLSLPRTRI_					0	0	0		nc|ENSG00000148688|P78346-2|RPP30	nc|ENSG00000148688|P78346-2|RPP30	nc|ENSG00000148688|P78346-2|RPP30	MULTI-SECPEP	A375_MHC_IP_R1	1	364.9231262207031	3	364.89273	1091.65636	0.0089524	3.2667E-06	0.32327	0.00011796	0.33223	0.00012123	364.89283126278536	32.473	0.75867	32.473	32.179	32.938	0					41	14	4	0	0	0	0.77834	1	10676	10676		5.2969	0.76802	1	57028000			19810	14670	14259	14365	19429	19429					0.11419935591038666
HLSLVSALEV	10	Unmodified	_HLSLVSALEV_					0	0	0		DHX8|p.P379L|1|0.31|ENSG00000067596|chr17:43493810-43493810|C/T|missense_variant	DHX8|p.P379L|1|0.31|ENSG00000067596|chr17:43493810-43493810|C/T|missense_variant	DHX8|p.P379L|1|0.31|ENSG00000067596|chr17:43493810-43493810|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	534.7083129882812	2	534.308406	1066.60226	-0.77924	-0.00041635	-0.22148	-0.00011834	-1.0007	-0.00053469	534.3082171120573	130.97	0.20273	131.19	131.11	131.31	0.2142					7	3	3	0	0	0	0.63639	1	51555	51555		18.146	1.0335	1	4843100			19811	743	14260	14366	19430	19430					0.07162298648813703
HLSNEWQEILT	11	Unmodified	_HLSNEWQEILT_					0	0	0			REV__SYDE2|p.M795I|1|0.33|ENSG00000097096|chr1:85182257-85182257|C/T|missense_variant	REV__SYDE2|p.M795I|1|0.33|ENSG00000097096|chr1:85182257-85182257|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	457.1433410644531	3	457.229736	1368.66738	-0.24907	-0.00011388	-0.049709	-2.2729E-05	-0.29878	-0.00013661	457.22958696595214	43.954	0.35697	43.954	43.808	44.165	0					10	6	2	0	0	0	0.73064	1	15296	15296		8.2864	0	1	1977300	+		19812	28070	14261	14367	19431	19431					-0.002207516159842271
HLSNIPPSV	9	Unmodified	_HLSNIPPSV_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF;nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000119314|O95758-7|PTBP3;ENSG00000117569|ENST00000674951|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	482.66644287109375	2	482.266542	962.51853	-0.27519	-0.00013272	-0.35251	-0.00017	-0.6277	-0.00030272	482.2663511253987	47.241	4.0518	47.241	45.183	49.235	0					108	79	2	0	0	0	0.018928	1	16482	16482		88.954	35.121	1	2546000			19813	998;3580;3493	14262	14368	19432	19432					0.03577187271764615
HLSNIPPSV	9	Unmodified	_HLSNIPPSV_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF;nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000119314|O95758-7|PTBP3;ENSG00000117569|ENST00000674951|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1	MSMS	A375_MHC_IP_R2	2	482.3974304199219	2	482.266542	962.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.258	1	48.02	47.52	48.52	0.76128								0	0	0	0.050211	1	17715	17715		53.833	3.8998	1				19814	998;3580;3493	14262	14368	19433	19433					0.03577187271764615
HLSPAYSHKW	10	Unmodified	_HLSPAYSHKW_					0	0	0			REV__ENST00000578217.1_1_17:26731487-26732732:-|nuORF	REV__ENST00000578217.1_1_17:26731487-26732732:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	409.6085205078125	3	409.208607	1224.60399	-0.027414	-1.1218E-05	0.30316	0.00012406	0.27575	0.00011284	409.20859312440956	52.277	0.7125	52.277	51.879	52.592	0					17	13	2	0	0	0	0.72006	1	18597	18597		3.3196	0.24738	1	2022800	+		19815	26327	14263	14369	19434	19434					0.0006735245742675033
HLSPEKFEV	9	Unmodified	_HLSPEKFEV_					0	0	0		VNN2|p.G454E|2|0.6|ENSG00000112303|chr6:132749705-132749705|C/T|missense_variant	VNN2|p.G454E|2|0.6|ENSG00000112303|chr6:132749705-132749705|C/T|missense_variant	VNN2|p.G454E|2|0.6|ENSG00000112303|chr6:132749705-132749705|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	362.46783447265625	3	362.525713	1084.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.886	1	47.886	47.386	48.386	0								0	0	0	0.15486	1	16863	16863		7.1017	1.3183	1				19816	30141	14264	14370	19435	19435					0.016414390976706272
HLSSESKEE	9	Unmodified	_HLSSESKEE_					0	0	0		nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;ENST00000374161.7_3_10:50011336-50031259:+|nuORF	nc|ENSG00000128815|Q6ZS81-5|WDFY4	nc|ENSG00000128815|Q6ZS81-5|WDFY4	MSMS	A375_MHC_IP_R2	2	523.0135498046875	2	523.24346	1044.47237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.61	1	143.63	143.13	144.13	0.024414								0	0	0	0.15486	1	56119	56119		3.9444	0	1				19817	4164	14265	14371	19436	19436					-0.048089224209888926
HLSYGFWFF	9	Unmodified	_HLSYGFWFF_					0	0	0			REV__GPLD1|p.S578F|1|0.08|ENSG00000112293|chr6:24446925-24446925|G/A|missense_variant	REV__GPLD1|p.S578F|1|0.08|ENSG00000112293|chr6:24446925-24446925|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	402.16119384765625	3	401.858915	1202.55492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.077	1	18.68	18.18	19.18	0.60308								0	0	0	0.15486	1	5357	5357		0.26902	0	1		+		19818	26697	14266	14372	19437	19437					-0.03825935831537208
HLTDITLKV	9	Unmodified	_HLTDITLKV_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000565738.1_1_16:75674022-75675473:-|nuORF	ENSG00000065427|ENST00000302445|KARS1;ENST00000565738.1_1_16:75674022-75675473:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	520.7106323242188	2	520.310949	1038.60735	-0.51853	-0.00026979	-0.0020054	-1.0435E-06	-0.52053	-0.00027084	520.3109125811403	60.441	0.81337	60.441	60.159	60.973	0					35	15	4	0	0	0	0.048303	1	21741	21741		74.2	45.118	1	9149200			19819	1382;13550	14267	14373	19438	19438					0.08958602511438585
HLTDITLKV	9	Unmodified	_HLTDITLKV_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000565738.1_1_16:75674022-75675473:-|nuORF	ENSG00000065427|ENST00000302445|KARS1;ENST00000565738.1_1_16:75674022-75675473:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	520.71044921875	2	520.310949	1038.60735	-1.0372	-0.00053969	0.033563	1.7463E-05	-1.0037	-0.00052223	520.3108776321216	59.476	1.0095	60.223	59.896	60.906	0.74714					40	19	3	0	0	0	0.14554	1	22473	22473		42.312	14.684	1	9184800			19820	1382;13550	14267	14373	19439	19439					0.08958602511438585
HLTGAPQVQL	10	Unmodified	_HLTGAPQVQL_					0	0	0			REV__ENST00000311604.7_1_11:1913006-1913114:+|nuORF	REV__ENST00000311604.7_1_11:1913006-1913114:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	355.9251403808594	3	355.201341	1062.58219	-0.62015	-0.00022028	-3.7512	-0.0013324	-4.3713	-0.0015527	355.5332176100975	26.284	0.5591	26.944	26.754	27.313	0.65992					21	10	3	0	0	0	0.87163	1	8806	8806		8.4443	3.9154	1	3385700	+		19821	23509	14268	14374	19440	19440					0.05340547708851773
HLTQFQSLT	9	Unmodified	_HLTQFQSLT_					0	0	0			REV__ENST00000471079.1_1_X:106358576-106359983:-|nuORF	REV__ENST00000471079.1_1_X:106358576-106359983:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	538.124267578125	2	537.782556	1073.55056	-0.62903	-0.00033828	-0.21524	-0.00011575	-0.84427	-0.00045403	537.7822990284716	96.529	0.71152	96.529	96.223	96.934	0					23	13	3	0	0	0	0.62767	1	35542	35542		16.942	10.737	1	1494800	+		19822	16916	14269	14375	19441	19441					0.016725549548937124
HLTQYSETI	9	Unmodified	_HLTQYSETI_					0	0	0			REV__nc|ENSG00000134954|P14921-5|ETS1	REV__nc|ENSG00000134954|P14921-5|ETS1	MULTI-SECPEP	A375_MHC_IP_R1	1	364.2491149902344	3	364.517106	1090.52949	0.22664	8.2615E-05	0.55141	0.000201	0.77805	0.00028361	364.5172092460956	31.448	0.20155	31.448	31.363	31.565	0					5	3	2	0	0	0	0.73008	1	10083	10083		12.175	8.8551	1	1125400	+		19823	18813	14270	14376	19442	19442					-0.012154551446201367
HLTQYSETI	9	Unmodified	_HLTQYSETI_					0	0	0			REV__nc|ENSG00000134954|P14921-5|ETS1	REV__nc|ENSG00000134954|P14921-5|ETS1	MULTI-SECPEP	A375_MHC_IP_R1	1	546.1215209960938	2	546.272021	1090.52949	-0.44118	-0.000241	-1.4028	-0.00076632	-1.844	-0.0010073	546.2725442361483	70.421	0.71613	70.421	70.185	70.902	0					24	12	3	0	0	0	0.62767	1	25615	25615		16.942	11.712	1	1182200	+		19824	18813	14270	14376	19443	19443					-0.012154551446201367
HLVDIVRSL	9	Unmodified	_HLVDIVRSL_					0	0	0		ENSG00000181481|ENST00000328381|RNF135;nc|ENSG00000181481|Q8IUD6-2|RNF135;nc|ENSG00000181481|Q8IUD6-3|RNF135	ENSG00000181481|ENST00000328381|RNF135	ENSG00000181481|ENST00000328381|RNF135	MULTI-SECPEP	A375_MHC_IP_R1	1	526.716064453125	2	526.316566	1050.61858	-0.4382	-0.00023063	-0.15267	-8.0352E-05	-0.59086	-0.00031098	526.316345378939	81.581	0.75978	81.581	81.353	82.113	0					19	14	2	0	0	0	0.47674	1	29842	29842		23.79	3.3752	1	2028600			19825	8349	14271	14377	19444	19444					0.09529424605580061
HLVDIVRSL	9	Unmodified	_HLVDIVRSL_					0	0	0		ENSG00000181481|ENST00000328381|RNF135;nc|ENSG00000181481|Q8IUD6-2|RNF135;nc|ENSG00000181481|Q8IUD6-3|RNF135	ENSG00000181481|ENST00000328381|RNF135	ENSG00000181481|ENST00000328381|RNF135	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1981811523438	2	526.316566	1050.61858	-0.50423	-0.00026538	-0.24304	-0.00012791	-0.74726	-0.0003933	526.3164673530439	80.579	0.66197	81.324	81.011	81.673	0.74473					19	12	3	0	0	0	0.60917	1	30662	30662		19.257	2.3147	1	1921500			19826	8349	14271	14377	19445	19445					0.09529424605580061
HLVDTGFALS	10	Unmodified	_HLVDTGFALS_					0	0	0		ENST00000427063.6_1_10:29710161-29710227:+|nuORF	ENST00000427063.6_1_10:29710161-29710227:+|nuORF	ENST00000427063.6_1_10:29710161-29710227:+|nuORF	MSMS	A375_MHC_IP_R1	1	530.1844482421875	2	530.277106	1058.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.559	1	30.559	30.059	31.059	0								0	0	0	0.15158	1	9723	9723		14.838	0	1				19827	11815	14272	14378	19446	19446					0.012731525806202626
HLVHAAISNF	10	Unmodified	_HLVHAAISNF_					0	0	0			REV__nc|ENSG00000204463|P46379-5|BAG6	REV__nc|ENSG00000204463|P46379-5|BAG6	MULTI-SECPEP	A375_MHC_IP_R2	2	369.5830993652344	3	370.201452	1107.58253	0.28463	0.00010537	-1.4272	-0.00052836	-1.1426	-0.00042299	370.2007982939327	32.533	0.45735	33.27	32.96	33.417	0.73692					13	8	2	0	0	0	0.91909	1	11452	11452		5.4027	0.87384	1	2257800	+		19828	22516	14273	14379	19447	19447					0.03303967428701071
HLVHAAISNF	10	Unmodified	_HLVHAAISNF_					0	0	0			REV__nc|ENSG00000204463|P46379-5|BAG6	REV__nc|ENSG00000204463|P46379-5|BAG6	MULTI-MATCH	A375_MHC_IP_R1	1		3	370.201452	1107.58253	0.23516	8.7058E-05	-1.2506	-0.00046299	-1.0155	-0.00037593	370.2007495577788	33.266	0.30263	33.266	33.04	33.342	0	-0.0021149	0.00011773	NaN	5.4027	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1761600	+		19829	22516	14273	14379							0.03303967428701071
HLVKLLGQTLG	11	Unmodified	_HLVKLLGQTLG_					0	0	0			REV__ENST00000510520.5_1_5:10442060-10472024:+|nuORF	REV__ENST00000510520.5_1_5:10442060-10472024:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	393.6452331542969	3	393.580041	1177.71829	0.13245	5.2129E-05	-1.8752	-0.00073805	-1.7428	-0.00068592	393.579308529914	42.208	0.55522	42.208	42.032	42.587	0					12	10	2	0	0	0	0.72801	1	14640	14640		8.7518	0	1	1523900	+		19830	25603	14274	14380	19448	19448					0.13654242219536172
HLVLQDLQLTR	11	Unmodified	_HLVLQDLQLTR_					0	0	0		ENSG00000159461|ENST00000290649|AMFR;ENST00000566334.1_1_16:56401340-56419833:-|nuORF	ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	MULTI-MSMS	A375_MHC_IP_R1	1	446.3297424316406	3	445.929621	1334.76703	0.1192	5.3156E-05	0.065964	2.9415E-05	0.18517	8.2571E-05	445.9296215872613	92.277	0.45558	92.277	92.059	92.515	0					19	8	3	0	0	0	0.73111	1	33940	33940		7.846	4.2534	1	3289700			19831	6374	14275	14381	19449	19449					0.1130411078859197
HLVLQDLQLTR	11	Unmodified	_HLVLQDLQLTR_					0	0	0		ENSG00000159461|ENST00000290649|AMFR;ENST00000566334.1_1_16:56401340-56419833:-|nuORF	ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	MULTI-MSMS	A375_MHC_IP_R2	2	446.3294982910156	3	445.929621	1334.76703	-0.27579	-0.00012298	0.48886	0.000218	0.21307	9.5015E-05	445.92976986408655	91.293	0.55766	92.028	91.767	92.325	0.7345					23	10	3	0	0	0	0.73388	1	34736	34736		5.1984	2.9457	1	2589900			19832	6374	14275	14381	19450	19450					0.1130411078859197
HLVLQDLQLTR	11	Unmodified	_HLVLQDLQLTR_					0	0	0		ENSG00000159461|ENST00000290649|AMFR;ENST00000566334.1_1_16:56401340-56419833:-|nuORF	ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	445.929621	1334.76703	0.1192	5.3156E-05	0.065964	2.9415E-05	0.18517	8.2571E-05	445.9296215872613	92.277	0.45558	92.277	92.059	92.515	0	0.1247	-0.00026437	NaN	7.846	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3289700			19833	6374	14275	14381							0.1130411078859197
HLVPEVPTV	9	Unmodified	_HLVPEVPTV_					0	0	0		ENSG00000160685|ENST00000535420|ZBTB7B;nc|ENSG00000160685|O15156-2|ZBTB7B	ENSG00000160685|ENST00000535420|ZBTB7B	ENSG00000160685|ENST00000535420|ZBTB7B	MULTI-SECPEP	A375_MHC_IP_R1	1	496.1841735839844	2	495.784567	989.554582	-0.34394	-0.00017052	-0.1202	-5.9596E-05	-0.46414	-0.00023012	495.78445096533153	73.005	2.636	73.005	72.524	75.16	0					118	51	4	0	0	0	0.011042	1	26490	26490		131.3	70.908	1	50538000			19834	6431	14276	14382	19451	19451					0.0593864444861083
HLVPEVPTV	9	Unmodified	_HLVPEVPTV_					0	0	0		ENSG00000160685|ENST00000535420|ZBTB7B;nc|ENSG00000160685|O15156-2|ZBTB7B	ENSG00000160685|ENST00000535420|ZBTB7B	ENSG00000160685|ENST00000535420|ZBTB7B	MULTI-MSMS	A375_MHC_IP_R2	2	496.18450927734375	2	495.784567	989.554582	-0.65514	-0.00032481	-0.012387	-6.1413E-06	-0.66753	-0.00033095	495.7844793911631	72.159	2.3881	72.893	72.465	74.853	0.73421					116	46	4	0	0	0	0.026461	1	27726	27726		77.984	35.89	1	48119000			19835	6431	14276	14382	19452	19452					0.0593864444861083
HLVVKKHQA	9	Unmodified	_HLVVKKHQA_					0	0	0		nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;ENST00000465814.5_1_11:72396711-72407721:-|nuORF;nc|ENSG00000186635|Q96P48-5|ARAP1;ENST00000544958.5_1_11:72404190-72406109:-|nuORF	nc|ENSG00000186635|Q96P48-3|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	MSMS	A375_MHC_IP_R1	1	353.77783203125	3	353.885576	1058.6349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.997	1	15.997	15.497	16.497	0								0	0	0	0.15486	1	3703	3703		0.26902	0.26902	1				19836	8766	14277	14383	19453	19453					0.10792550562314318
HLVVKKHQA	9	Unmodified	_HLVVKKHQA_					0	0	0		nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;ENST00000465814.5_1_11:72396711-72407721:-|nuORF;nc|ENSG00000186635|Q96P48-5|ARAP1;ENST00000544958.5_1_11:72404190-72406109:-|nuORF	nc|ENSG00000186635|Q96P48-3|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	MSMS	A375_MHC_IP_R2	2	353.77764892578125	3	353.885576	1058.6349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.89	1	15.463	14.963	15.963	0.573								0	0	0	0.15486	1	4477	4477		0.26902	0.033176	1				19837	8766	14277	14383	19454	19454					0.10792550562314318
HLVVKKHQA	9	Unmodified	_HLVVKKHQA_					0	0	0		nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;ENST00000465814.5_1_11:72396711-72407721:-|nuORF;nc|ENSG00000186635|Q96P48-5|ARAP1;ENST00000544958.5_1_11:72404190-72406109:-|nuORF	nc|ENSG00000186635|Q96P48-3|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	MSMS	A375_MHC_IP_R2	2	353.77783203125	3	353.885576	1058.6349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.468	1	17.064	16.564	17.564	0.59616								0	0	0	0.15486	1	4876	4876		0.26902	0.26902	1				19838	8766	14277	14383	19455	19455					0.10792550562314318
HLWAELVFL	9	Unmodified	_HLWAELVFL_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	A375_MHC_IP_R1	1	564.7156982421875	2	564.316035	1126.61752	-0.63908	-0.00036064	-0.51146	-0.00028863	-1.1505	-0.00064927	564.3156556520222	130.67	0.56024	130.67	130.51	131.07	0					16	10	2	0	0	0	0.0089724	1	50311	50311		98.807	62.68	1	21569000			19839	5230;1491	14278	14384	19456	19456					0.05927210236654901
HLWAELVFL	9	Unmodified	_HLWAELVFL_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	A375_MHC_IP_R2	2	564.7157592773438	2	564.316035	1126.61752	-0.49813	-0.0002811	0.068798	3.8824E-05	-0.42933	-0.00024228	564.3160049342295	130.46	0.40558	130.68	130.5	130.91	0.2142					15	7	3	0	0	0	0.051888	1	51342	51342		63.563	36.679	1	16999000			19840	5230;1491	14278	14384	19457	19457					0.05927210236654901
HLWNSIHGL	9	Unmodified	_HLWNSIHGL_					0	0	0		nc|ENSG00000188554|Q14596-2|NBR1;ENSG00000188554|ENST00000590996|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	MULTI-MSMS	A375_MHC_IP_R1	1	538.699951171875	2	538.785433	1075.55631	-0.72524	-0.00039075	0.62092	0.00033454	-0.10432	-5.6207E-05	538.7855731069807	64.703	0.86333	64.703	64.393	65.257	0					35	16	3	0	0	0	0.16945	1	23499	23499		40.239	7.9337	1	5422700			19841	8914	14279	14385	19458	19458					0.021556982572292327
HLWNSIHGL	9	Unmodified	_HLWNSIHGL_					0	0	0		nc|ENSG00000188554|Q14596-2|NBR1;ENSG00000188554|ENST00000590996|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	MULTI-MSMS	A375_MHC_IP_R2	2	539.1848754882812	2	538.785433	1075.55631	-0.79527	-0.00042848	0.29221	0.00015744	-0.50306	-0.00027104	538.785536012435	63.663	1.0172	64.403	64.088	65.106	0.74022					32	19	2	0	0	0	0.04093	1	24111	24111		67.838	35.533	1	5691300			19842	8914	14279	14385	19459	19459					0.021556982572292327
HLWRGIVSI	9	Unmodified	_HLWRGIVSI_					0	0	0		nc|ENSG00000175471|Q6DN14-4|MCTP1;nc|ENSG00000175471|Q6DN14-3|MCTP1;nc|ENSG00000175471|Q6DN14-2|MCTP1;ENSG00000175471|ENST00000515393|MCTP1	nc|ENSG00000175471|Q6DN14-4|MCTP1	nc|ENSG00000175471|Q6DN14-4|MCTP1	MULTI-SECPEP	A375_MHC_IP_R2	2	541.218994140625	2	540.819276	1079.624	-0.83479	-0.00045147	0.62204	0.00033641	-0.21275	-0.00011506	540.819463667265	76.432	0.55833	77.173	76.943	77.501	0.74052					17	10	2	0	0	0	0.28216	1	29053	29053		49.933	17.628	1	2235600			19843	7962	14280	14386	19460	19460					0.08737148188038191
HLWRYFHRPAD	11	Unmodified	_HLWRYFHRPAD_					0	0	0		ENST00000528063.5_1_11:66049809-66051065:+|nuORF;ENST00000531936.1_1_11:66050146-66051065:+|nuORF;ENSG00000174871|ENST00000311445|CNIH2	ENST00000528063.5_1_11:66049809-66051065:+|nuORF	ENST00000528063.5_1_11:66049809-66051065:+|nuORF	MSMS	A375_MHC_IP_R2	2	749.379150390625	2	749.378552	1496.74255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.537	1	36.3	35.8	36.8	0.76338								0	0	0	0.16334	1	12895	12895		1.3295	0	1				19844	7911	14281	14387	19461	19461					0.014048954257305013
HLWWEWYHPQF	11	Unmodified	_HLWWEWYHPQF_					0	0	0		CLCNKA|p.R395Q|1|0.27|ENSG00000186510|chr1:16029256-16029256|G/A|missense_variant	CLCNKA|p.R395Q|1|0.27|ENSG00000186510|chr1:16029256-16029256|G/A|missense_variant	CLCNKA|p.R395Q|1|0.27|ENSG00000186510|chr1:16029256-16029256|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	543.6420288085938	3	543.585966	1627.73607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.757	1	99.757	99.257	100.26	0								0	0	0	0.16353	1	36651	36651		0.094841	0	1				19845	534	14282	14388	19462	19462					-0.0526904252562872
HLYDIHVTV	9	Unmodified	_HLYDIHVTV_					0	0	0		ENSG00000213965|ENST00000397061|NUDT19	ENSG00000213965|ENST00000397061|NUDT19	ENSG00000213965|ENST00000397061|NUDT19	MULTI-MSMS	A375_MHC_IP_R1	1	549.1929321289062	2	548.792924	1095.57129	-0.74077	-0.00040653	0.31225	0.00017136	-0.42852	-0.00023517	548.7930402998265	66.453	1.0684	66.453	66.022	67.091	0					29	20	2	0	0	0	0.0098409	1	24048	24048		115.69	59.515	1	6928400			19846	9593	14283	14389	19463	19463					0.027331453345595946
HLYDIHVTV	9	Unmodified	_HLYDIHVTV_					0	0	0		ENSG00000213965|ENST00000397061|NUDT19	ENSG00000213965|ENST00000397061|NUDT19	ENSG00000213965|ENST00000397061|NUDT19	MULTI-MSMS	A375_MHC_IP_R2	2	549.1923828125	2	548.792924	1095.57129	-0.94302	-0.00051752	0.29964	0.00016444	-0.64338	-0.00035308	548.7929379329076	65.561	1.2731	66.299	65.917	67.191	0.73811					52	24	4	0	0	0	0.012968	1	24827	24827		92.491	50.397	1	8018900			19847	9593	14283	14389	19464	19464					0.027331453345595946
HLYDKGSTIFL	11	Unmodified	_HLYDKGSTIFL_					0	0	0		ENSG00000135048|ENST00000377044|CEMIP2;nc|ENSG00000135048|Q9UHN6-2|CEMIP2;ENST00000377057.5_1_9:74300115-74313140:-|nuORF	ENSG00000135048|ENST00000377044|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	MULTI-MSMS	A375_MHC_IP_R1	1	647.9352416992188	2	647.34552	1292.67649	-0.35388	-0.00022908	0.034996	2.2655E-05	-0.31888	-0.00020643	647.3456864894664	74.178	0.55849	74.178	73.943	74.502	0					19	10	2	0	0	0	0.67565	1	27104	27104		17.443	6.6187	1	3124900			19848	4638	14284	14390	19465	19465					0.041856417403323576
HLYDKGSTIFL	11	Unmodified	_HLYDKGSTIFL_					0	0	0		ENSG00000135048|ENST00000377044|CEMIP2;nc|ENSG00000135048|Q9UHN6-2|CEMIP2;ENST00000377057.5_1_9:74300115-74313140:-|nuORF	ENSG00000135048|ENST00000377044|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	432.2993469238281	3	431.899439	1292.67649	-0.16009	-6.9144E-05	-0.075818	-3.2746E-05	-0.23591	-0.00010189	431.8993825397155	74.195	0.66033	74.195	73.943	74.604	0					25	12	4	0	0	0	0.58862	1	27031	27031		31.462	19.234	1	1601400			19849	4638	14284	14390	19466	19466					0.041856417403323576
HLYDKGSTIFL	11	Unmodified	_HLYDKGSTIFL_					0	0	0		ENSG00000135048|ENST00000377044|CEMIP2;nc|ENSG00000135048|Q9UHN6-2|CEMIP2;ENST00000377057.5_1_9:74300115-74313140:-|nuORF	ENSG00000135048|ENST00000377044|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	432.2994689941406	3	431.899439	1292.67649	-0.18776	-8.1094E-05	-0.17826	-7.699E-05	-0.36602	-0.00015808	431.89942183336166	73.249	0.5603	73.984	73.785	74.345	0.7354					23	10	3	0	0	0	0.7254	1	27799	27799		26.121	22.004	1	1695900			19850	4638	14284	14390	19467	19467					0.041856417403323576
HLYDKGSTIFL	11	Unmodified	_HLYDKGSTIFL_					0	0	0		ENSG00000135048|ENST00000377044|CEMIP2;nc|ENSG00000135048|Q9UHN6-2|CEMIP2;ENST00000377057.5_1_9:74300115-74313140:-|nuORF	ENSG00000135048|ENST00000377044|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	647.744873046875	2	647.34552	1292.67649	-0.61977	-0.00040121	0.43204	0.00027968	-0.18773	-0.00012152	647.3459071450127	73.305	0.50857	74.041	73.785	74.294	0.73541					22	9	3	0	0	0	0.1639	1	27805	27805		60.899	34.631	1	2844300			19851	4638	14284	14390	19468	19468					0.041856417403323576
HLYDYTVKL	9	Unmodified	_HLYDYTVKL_					0	0	0		nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1;ENSG00000127946|ENST00000336926|HIP1	nc|ENSG00000127946|O00291-3|HIP1	nc|ENSG00000127946|O00291-3|HIP1	MULTI-MSMS	A375_MHC_IP_R1	1	576.7079467773438	2	576.308406	1150.60226	-0.25339	-0.00014603	0.26046	0.0001501	0.0070624	4.0701E-06	576.30851214958	64.971	0.76228	64.971	64.649	65.411	0					34	14	4	0	0	0	0.014789	1	23487	23487		90.135	33.958	1	9818000			19852	4110	14285	14391	19469	19469					0.032982986488150345
HLYDYTVKL	9	Unmodified	_HLYDYTVKL_					0	0	0		nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1;ENSG00000127946|ENST00000336926|HIP1	nc|ENSG00000127946|O00291-3|HIP1	nc|ENSG00000127946|O00291-3|HIP1	MULTI-SECPEP	A375_MHC_IP_R2	2	576.7074584960938	2	576.308406	1150.60226	-0.096508	-5.5618E-05	-0.16531	-9.5271E-05	-0.26182	-0.00015089	576.3081723682004	64.041	0.81369	64.781	64.496	65.31	0.74023					32	15	3	0	0	0	0.078412	1	24266	24266		90.135	33.958	1	8856400			19853	4110	14285	14391	19470	19470					0.032982986488150345
HLYEDLFRA	9	Unmodified	_HLYEDLFRA_					0	0	0		ENST00000497613.2_1_8:145667587-145667875:-|nuORF;nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL	ENST00000497613.2_1_8:145667587-145667875:-|nuORF	ENST00000497613.2_1_8:145667587-145667875:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	582.695068359375	2	582.29583	1162.57711	-0.31934	-0.00018595	-1.3268	-0.0007726	-1.6462	-0.00095855	582.2952547838098	70.2	0.66013	70.934	70.642	71.302	0.73421					20	12	3	0	0	0	0.656	1	26623	26623		26.268	9.3258	1	1683400			19854	6450	14286	14392	19471	19471					0.002322438462442733
HLYEDLFRA	9	Unmodified	_HLYEDLFRA_					0	0	0		ENST00000497613.2_1_8:145667587-145667875:-|nuORF;nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL	ENST00000497613.2_1_8:145667587-145667875:-|nuORF	ENST00000497613.2_1_8:145667587-145667875:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	582.29583	1162.57711	-0.12388	-7.2135E-05	-0.75942	-0.00044221	-0.8833	-0.00051434	582.296077714331	71.041	0.56458	71.041	70.749	71.313	0	0.053334	0.00052244	NaN	26.268	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1541600			19855	6450	14286	14392							0.002322438462442733
HLYGGIILL	9	Unmodified	_HLYGGIILL_					0	0	0		ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	MULTI-MSMS	A375_MHC_IP_R1	1	500.2047119140625	2	499.805303	997.596052	0.090835	4.54E-05	-0.36786	-0.00018386	-0.27703	-0.00013846	499.80519341175824	114.34	1.7761	114.34	114.11	115.89	0					71	34	3	0	0	0	0.042019	1	41918	41918		67.413	17.744	1	14349000			19856	5113	14287	14393	19472	19472					0.09715825207945272
HLYGGIILL	9	Unmodified	_HLYGGIILL_					0	0	0		ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	MULTI-MSMS	A375_MHC_IP_R2	2	500.20550537109375	2	499.805303	997.596052	-0.34327	-0.00017157	0.03764	1.8813E-05	-0.30563	-0.00015276	499.80525497722385	113.36	1.723	114.07	113.77	115.49	0.70984					61	33	3	0	0	0	0.12743	1	42922	42922		45.75	3.6554	1	11854000			19857	5113	14287	14393	19473	19473					0.09715825207945272
HLYPGAVTI	9	Unmodified	_HLYPGAVTI_					0	0	0		nc|ENSG00000116191|Q86X27-3|RALGPS2;ENSG00000116191|ENST00000367635|RALGPS2;ENST00000480743.1_1_1:178855116-178863183:+|nuORF;ENST00000478871.1_1_1:178863027-178885491:+|nuORF	nc|ENSG00000116191|Q86X27-3|RALGPS2	nc|ENSG00000116191|Q86X27-3|RALGPS2	MULTI-SECPEP	A375_MHC_IP_R2	2	486.1712646484375	2	485.77146	969.528367	-0.71312	-0.00034642	-2.8	-0.0013602	-3.5132	-0.0017066	485.7717918699166	66.58	0.56046	67.316	67.087	67.648	0.73631					15	10	2	0	0	0	0.44615	1	25252	25252		34.187	7.3037	1	1790900			19858	3381	14288	14394	19474	19474					0.042383752771456784
HLYPKGEADA	10	Unmodified	_HLYPKGEADA_					0	0	0			REV__ENSG00000116685|ENST00000376572|KIAA2013	REV__ENSG00000116685|ENST00000376572|KIAA2013	MULTI-MSMS	A375_MHC_IP_R2	2	367.9454040527344	3	367.517218	1099.52982	0.34759	0.00012774	0.022794	8.3774E-06	0.37038	0.00013612	367.5171630411691	46.766	0.35459	47.528	47.412	47.766	0.76127					9	6	2	0	0	0	0.70651	1	17499	17499		5.4027	0.5057	1	1172000	+		19859	17964	14289	14395	19475	19475					-0.015960354247454234
HLYSSIEHLTT	11	Unmodified	_HLYSSIEHLTT_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.S3306Afs*6|1|0.29|ENSG00000086758|chrX:53549078-53549079|-/ACGC|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	A375_MHC_IP_R1	1	650.7066650390625	2	650.830234	1299.64592	-0.34249	-0.0002229	-0.13559	-8.8243E-05	-0.47808	-0.00031115	651.3314911628712	50.869	0.30231	50.869	50.613	50.915	0					8	5	2	0	0	0	0.16898	1	17984	17984		55.503	22.717	1	1212900			19860	1846	14290	14396	19476	19476					0.008078633552713654
HLYSTTHKL	9	Unmodified	_HLYSTTHKL_					0	0	0			REV__ENSG00000064313|ENST00000378164|TAF2	REV__ENSG00000064313|ENST00000378164|TAF2	MULTI-SECPEP	A375_MHC_IP_R1	1	366.64495849609375	3	367.201341	1098.58219	0.15396	5.6534E-05	-0.0015683	-5.7588E-07	0.15239	5.5958E-05	367.20123229867227	36.917	0.50405	36.917	36.745	37.249	0					13	9	2	0	0	0	0.74651	1	12540	12540		2.7352	0	1	1131900	+		19861	16476	14291	14397	19477	19477					0.03684547708826358
HLYTSLPSL	9	Unmodified	_HLYTSLPSL_					0	0	0		nc|ENSG00000144560|Q14135-4|VGLL4;ENSG00000144560|ENST00000430365|VGLL4;nc|ENSG00000144560|Q14135-5|VGLL4;nc|ENSG00000144560|Q14135-6|VGLL4;nc|ENSG00000144560|Q14135-2|VGLL4;nc|ENSG00000144560|Q14135|VGLL4	nc|ENSG00000144560|Q14135-4|VGLL4	nc|ENSG00000144560|Q14135-4|VGLL4	MULTI-MSMS	A375_MHC_IP_R1	1	516.1826782226562	2	515.782025	1029.5495	-0.4633	-0.00023896	0.7341	0.00037864	0.2708	0.00013967	515.7825622517367	81.809	0.50626	81.809	81.455	81.961	0					19	9	3	0	0	0	0.021919	1	29914	29914		81.864	35.843	1	2849400			19862	5493	14292	14398	19478	19478					0.035903405860153725
HLYTSLPSL	9	Unmodified	_HLYTSLPSL_					0	0	0		nc|ENSG00000144560|Q14135-4|VGLL4;ENSG00000144560|ENST00000430365|VGLL4;nc|ENSG00000144560|Q14135-5|VGLL4;nc|ENSG00000144560|Q14135-6|VGLL4;nc|ENSG00000144560|Q14135-2|VGLL4;nc|ENSG00000144560|Q14135|VGLL4	nc|ENSG00000144560|Q14135-4|VGLL4	nc|ENSG00000144560|Q14135-4|VGLL4	MULTI-SECPEP	A375_MHC_IP_R2	2	516.1821899414062	2	515.782025	1029.5495	-0.85507	-0.00044103	0.39352	0.00020297	-0.46155	-0.00023806	515.7822965441255	80.91	0.81504	81.655	81.365	82.18	0.74473					22	15	2	0	0	0	0.054184	1	30784	30784		70.716	19.86	1	3629800			19863	5493	14292	14398	19479	19479					0.035903405860153725
HLYVFLPY	8	Unmodified	_HLYVFLPY_					0	0	0			REV__nc|ENSG00000135801|O75529-2|TAF5L	REV__nc|ENSG00000135801|O75529-2|TAF5L	MULTI-SECPEP	A375_MHC_IP_R2	2	526.6821899414062	2	526.284203	1050.55385	-0.51352	-0.00027026	-1.0058	-0.00052933	-1.5193	-0.00079959	526.2833989271088	106.59	0.50928	107.35	107.09	107.6	0.75977					16	9	2	0	0	0	0.85371	1	40301	40301		32.454	13.092	1	1984400	+		19864	18885	14293	14399	19480	19480					0.03059849799569747
HLYYVDPVN	9	Unmodified	_HLYYVDPVN_					0	0	0		nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	MULTI-MSMS	A375_MHC_IP_R2	2	560.7105712890625	2	560.277106	1118.53966	-0.98363	-0.00055111	-0.3282	-0.00018388	-1.3118	-0.00073499	560.2770740359772	56.466	0.66328	57.216	56.745	57.408	0.75014					17	12	2	0	0	0	0.17328	1	21411	21411		39.957	12.329	1	2900300			19865	5204	14294	14400	19481	19481					-0.014868474193917791
HMEEPTDANCH	11	Unmodified	_HMEEPTDANCH_					0	0	0			REV__ENSG00000145555|ENST00000513610|MYO10	REV__ENSG00000145555|ENST00000513610|MYO10	MSMS	A375_MHC_IP_R2	2	642.2813720703125	2	642.242612	1282.47067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.16	1	137.26	136.76	137.76	0.097641								0	0	0	0.16302	1	53846	53846		2.9952	1.3426	1		+		19866	19480	14295	14401	19482	19482					-0.15926622772917653
HMFLLARLHVK	11	Unmodified	_HMFLLARLHVK_					0	0	0		MC3R|p.F213L|1|0.08|ENSG00000124089|chr20:56249482-56249482|T/G|missense_variant	MC3R|p.F213L|1|0.08|ENSG00000124089|chr20:56249482-56249482|T/G|missense_variant	MC3R|p.F213L|1|0.08|ENSG00000124089|chr20:56249482-56249482|T/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	683.3036499023438	2	682.902817	1363.79108	-0.46115	-0.00031492	0.83559	0.00057063	0.37444	0.00025571	682.9033788534447	142.26	0.91222	142.29	141.67	142.58	0.030731					40	17	3	0	0	0	1.0008	1	55502	55502		1.3295	1.3295	1	6284700			19867	14359	14296	14402	19483	19483					0.12373672741273367
HMFLLARLHVK	11	Unmodified	_HMFLLARLHVK_					0	0	0		MC3R|p.F213L|1|0.08|ENSG00000124089|chr20:56249482-56249482|T/G|missense_variant	MC3R|p.F213L|1|0.08|ENSG00000124089|chr20:56249482-56249482|T/G|missense_variant	MC3R|p.F213L|1|0.08|ENSG00000124089|chr20:56249482-56249482|T/G|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	682.902817	1363.79108	-0.982	-0.00067061	0.87157	0.00059519	-0.11044	-7.5419E-05	682.9033478051674	142.26	0.75854	142.26	141.68	142.44	0	-0.017954	2.3664E-05	NaN	1.3295	39	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5937500			19868	14359	14296	14402							0.12373672741273367
HMHQFHQLT	9	Unmodified	_HMHQFHQLT_					0	0	0			REV__ENSG00000255154|ENST00000461393|HTD2	REV__ENSG00000255154|ENST00000461393|HTD2	MSMS	A375_MHC_IP_R1	1	589.7190551757812	2	589.779825	1177.5451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.911	1	56.911	56.411	57.411	0								0	0	0	0.15069	1	20400	20400		20.454	1.0917	1		+		19869	22873	14297	14403	19484	19484					-0.03657447108571432
HMHQFHQLT	9	Unmodified	_HMHQFHQLT_					0	0	0			REV__ENSG00000255154|ENST00000461393|HTD2	REV__ENSG00000255154|ENST00000461393|HTD2	MSMS	A375_MHC_IP_R2	2	589.7186279296875	2	589.779825	1177.5451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.184	1	56.934	56.434	57.434	0.75015								0	0	0	0.1521	1	21231	21231		18.146	1.9972	1		+		19870	22873	14297	14403	19485	19485					-0.03657447108571432
HMIGMSHCY	9	Unmodified	_HMIGMSHCY_					0	0	0			REV__nc|ENSG00000101266|P68400-2|CSNK2A1	REV__nc|ENSG00000101266|P68400-2|CSNK2A1	MULTI-MSMS	A375_MHC_IP_R2	2	540.21923828125	2	539.71699	1077.41943	-1.349	-0.00072807	0.85109	0.00045935	-0.4979	-0.00026872	539.7172759524425	52.758	0.71008	53.509	53.183	53.893	0.75105					25	13	3	0	0	0	0.3054	1	19909	19909		30.225	7.4885	1	3613300	+		19871	17153	14298	14404	19486	19486					-0.11618618280635928
HMLWTWWS	8	Unmodified	_HMLWTWWS_					0	0	0			REV__ENST00000515035.5_1_5:149747162-149747330:+|nuORF	REV__ENST00000515035.5_1_5:149747162-149747330:+|nuORF	MSMS	A375_MHC_IP_R2	2	382.4821472167969	3	382.8445	1145.51167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.265	1	15.853	15.353	16.353	0.58774								0	0	0	0.16876	1	4566	4566		0.45834	0	1		+		19872	25655	14299	14405	19487	19487					-0.05526448880459611
HMWGHAYSY	9	Unmodified	_HMWGHAYSY_					0	0	0			REV__CON__Q2KJ83	REV__CON__Q2KJ83	MULTI-MSMS	A375_MHC_IP_R1	1	576.6402587890625	2	576.240001	1150.46545	0.0053801	3.1002E-06	0.6709	0.0003866	0.67628	0.0003897	576.2403541935541	20.965	0.45699	20.965	20.742	21.199	0					18	8	3	0	0	0	0.1978	1	5438	5438		38.151	38.151	1	6440500	+	+	19873	15880	14300	14406	19488	19488					-0.10376513782557595
HMWGHAYSY	9	Unmodified	_HMWGHAYSY_					0	0	0			REV__CON__Q2KJ83	REV__CON__Q2KJ83	MULTI-MSMS	A375_MHC_IP_R2	2	576.6403198242188	2	576.240001	1150.46545	-0.52446	-0.00030221	1.7679	0.0010187	1.2434	0.00071652	576.2407368557024	22.917	0.61253	23.547	23.164	23.777	0.63014					15	11	2	0	0	0	0.3054	1	7342	7342		30.225	4.8255	1	3394600	+	+	19874	15880	14300	14406	19489	19489					-0.10376513782557595
HMWGHAYSY	9	Unmodified	_HMWGHAYSY_					0	0	0			REV__CON__Q2KJ83	REV__CON__Q2KJ83	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	576.240001	1150.46545	0.0053801	3.1002E-06	0.6709	0.0003866	0.67628	0.0003897	576.2403541935541	20.965	0.45699	20.965	20.742	21.199	0	0	0	NaN	38.151	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6440500	+	+	19875	15880	14300	14406							-0.10376513782557595
HMWGHAYSY	9	Unmodified	_HMWGHAYSY_					0	0	0			REV__CON__Q2KJ83	REV__CON__Q2KJ83	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	576.240001	1150.46545	-0.52446	-0.00030221	1.7679	0.0010187	1.2434	0.00071652	576.2407368557024	22.917	0.61253	23.547	23.164	23.777	0.63014	-0.0315	0.00034406	NaN	30.225	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3394600	+	+	19876	15880	14300	14406							-0.10376513782557595
HNDTWDIYL	9	Unmodified	_HNDTWDIYL_					0	0	0			REV__C5|p.S1420Hfs*6|1|0.02|ENSG00000106804|chr9:120963702-120963703|-/TGTGT|frameshift_variant	REV__C5|p.S1420Hfs*6|1|0.02|ENSG00000106804|chr9:120963702-120963703|-/TGTGT|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	589.169189453125	2	588.769645	1175.52474	-0.17873	-0.00010523	0.37729	0.00022213	0.19856	0.0001169	588.7694311447138	44.156	0.56186	44.156	43.909	44.471	0					30	10	4	0	0	0	0.34064	1	15376	15376		27.629	7.1752	1	9644700	+		19877	15542	14301	14407	19490	19490					-0.05600339287366296
HNDTWDIYL	9	Unmodified	_HNDTWDIYL_					0	0	0			REV__C5|p.S1420Hfs*6|1|0.02|ENSG00000106804|chr9:120963702-120963703|-/TGTGT|frameshift_variant	REV__C5|p.S1420Hfs*6|1|0.02|ENSG00000106804|chr9:120963702-120963703|-/TGTGT|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	589.1693725585938	2	588.769645	1175.52474	-0.43614	-0.00025679	0.98687	0.00058104	0.55072	0.00032425	588.7696129453019	43.256	0.70808	44.029	43.775	44.483	0.7724					31	13	5	0	0	0	0.29123	1	16107	16107		31.268	2.1868	1	6762000	+		19878	15542	14301	14407	19491	19491					-0.05600339287366296
HNDTWDIYL	9	Unmodified	_HNDTWDIYL_					0	0	0			REV__C5|p.S1420Hfs*6|1|0.02|ENSG00000106804|chr9:120963702-120963703|-/TGTGT|frameshift_variant	REV__C5|p.S1420Hfs*6|1|0.02|ENSG00000106804|chr9:120963702-120963703|-/TGTGT|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	588.769645	1175.52474	-0.17873	-0.00010523	0.37729	0.00022213	0.19856	0.0001169	588.7694311447138	44.156	0.56186	44.156	43.909	44.471	0	0.063712	-0.00023056	NaN	31.268	30	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9644700	+		19879	15542	14301	14407							-0.05600339287366296
HNDTWDIYL	9	Unmodified	_HNDTWDIYL_					0	0	0			REV__C5|p.S1420Hfs*6|1|0.02|ENSG00000106804|chr9:120963702-120963703|-/TGTGT|frameshift_variant	REV__C5|p.S1420Hfs*6|1|0.02|ENSG00000106804|chr9:120963702-120963703|-/TGTGT|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	588.769645	1175.52474	-0.43614	-0.00025679	0.98687	0.00058104	0.55072	0.00032425	588.7696129453019	43.256	0.70808	44.029	43.775	44.483	0.7724	-0.063712	0.00048725	NaN	31.268	31	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6762000	+		19880	15542	14301	14407							-0.05600339287366296
HNEGELRLTY	10	Unmodified	_HNEGELRLTY_					0	0	0			REV__ENST00000438828.3_3_2:203777481-203777724:+|nuORF	REV__ENST00000438828.3_3_2:203777481-203777724:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	411.9411315917969	3	411.207043	1230.5993	-0.1906	-7.8377E-05	-0.4849	-0.0001994	-0.67551	-0.00027777	411.2069218492146	34.557	0.4567	35.315	35.113	35.57	0.75723					12	8	2	0	0	0	0.88361	1	12487	12487		15.739	15.739	1	3038300	+		19881	24789	14302	14408	19492	19492					-0.006775764760050151
HNKRVPARH	9	Unmodified	_HNKRVPARH_					0	0	0			REV__nc|ENSG00000286102|A0A494C0Y3|FAM246A	REV__nc|ENSG00000286102|A0A494C0Y3|FAM246A	MULTI-MSMS	A375_MHC_IP_R1	1	373.5504455566406	3	372.216207	1113.62679	0.15753	5.8634E-05	-0.67101	-0.00024976	-0.51349	-0.00019113	372.2160815637475	19.292	1.0618	19.292	19.221	20.283	0					75	22	6	0	0	0	0.7724	1	4635	4635		0.23584	0	1	340950000	+		19882	27555	14303	14409	19493	19493					0.07452416365549652
HNLDLSEN	8	Unmodified	_HNLDLSEN_					0	0	0		LRRTM4|p.G262E|1|0.21|ENSG00000176204|chr2:77519084-77519084|C/T|missense_variant	LRRTM4|p.G262E|1|0.21|ENSG00000176204|chr2:77519084-77519084|C/T|missense_variant	LRRTM4|p.G262E|1|0.21|ENSG00000176204|chr2:77519084-77519084|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	471.1476745605469	2	471.219788	940.425024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.678	1	66.416	65.916	66.916	0.73811								0	0	0	0.16876	1	24900	24900		20.454	2.3186	1				19883	14324	14304	14410	19494	19494					-0.04757156901325743
HNMTWKTWPIF	11	Unmodified	_HNMTWKTWPIF_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2;nc|ENSG00000257743|Q2M2H8-3|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MSMS	A375_MHC_IP_R2	2	487.6765441894531	3	487.576302	1459.70708	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.325	1	28.003	27.503	28.503	0.67857								0	0	0	0.16309	1	9323	9323		2.6312	0.37851	1				19884	9912	14305	14411	19495	19495					-0.004389031462778803
HNMWNYLYFIV	11	Unmodified	_HNMWNYLYFIV_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MSMS	A375_MHC_IP_R1	1	500.47528076171875	3	500.57619	1498.70674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.683	1	74.683	74.183	75.183	0								0	0	0	0.1623	1	27204	27204		3.0723	2.5663	1				19885	2058	14306	14412	19496	19496					-0.022663228661485846
HNMWNYLYFIV	11	Unmodified	_HNMWNYLYFIV_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MSMS	A375_MHC_IP_R1	1	500.4749450683594	3	500.57619	1498.70674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.996	1	94.996	94.496	95.496	0								0	0	0	0.16331	1	34916	34916		0.50596	0	1				19886	2058	14306	14412	19497	19497					-0.022663228661485846
HNMWRMYKKRW	11	Unmodified	_HNMWRMYKKRW_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1;REV__nc|ENSG00000151914|Q03001|DST;REV__nc|ENSG00000151914|Q03001-8|DST;REV__nc|ENSG00000127603|O94854|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	A375_MHC_IP_R2	2	546.2603149414062	3	545.943102	1634.80748	-0.64474	-0.00035199	0.602	0.00032866	-0.04274	-2.3334E-05	545.9431822855621	93.744	0.70868	94.489	94.109	94.818	0.74474					18	13	2	0	0	0	1.0002	1	35600	35600		1.3296	0.11481	1	3132300	+		19887	18428;19783;27289;27214	14307	14413	19498	19498					0.015464306356989255
HNPRILQKI	9	Unmodified	_HNPRILQKI_					0	0	0		ENST00000453153.6_2_2:170428583-170430242:-|nuORF	ENST00000453153.6_2_2:170428583-170430242:-|nuORF	ENST00000453153.6_2_2:170428583-170430242:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	373.60125732421875	3	373.564614	1117.67201	0.37625	0.00014055	-0.01069	-3.9933E-06	0.36556	0.00013656	373.5644634064379	28.671	0.91128	28.671	28.238	29.149	0					58	17	5	0	0	0	0.57432	1	8962	8962		16.149	3.2765	1	116680000			19888	12092	14308	14414	19499	19499					0.11788222108066293
HNRLMEQL	8	Unmodified	_HNRLMEQL_					0	0	0		ENST00000586256.1_1_16:4784633-4796526:+|nuORF;ENSG00000166246|ENST00000299320|DNAAF8	ENST00000586256.1_1_16:4784633-4796526:+|nuORF	ENST00000586256.1_1_16:4784633-4796526:+|nuORF	MSMS	A375_MHC_IP_R2	2	520.7473754882812	2	520.768926	1039.5233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.08	1	109.83	109.33	110.33	0.74684								0	0	0	0.16876	1	41172	41172		13.508	0.97634	1				19889	7046	14309	14415	19500	19500					0.005117481428669635
HNRNEDFPYWQ	11	Unmodified	_HNRNEDFPYWQ_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MSMS	A375_MHC_IP_R1	1	502.45391845703125	3	502.556735	1504.64838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.369	1	32.369	31.869	32.869	0								0	0	0	0.16344	1	10452	10452		0.84494	0.43668	1		+		19890	19778	14310	14416	19501	19501					-0.083762881870598
HNWDPLLKFYH	11	Unmodified	_HNWDPLLKFYH_					0	0	0			REV__ENSG00000204020|ENST00000404459|LIPN	REV__ENSG00000204020|ENST00000404459|LIPN	MSMS	A375_MHC_IP_R1	1	490.6218566894531	3	490.582333	1468.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.423	1	23.423	22.923	23.923	0								0	0	0	0.16334	1	6426	6426		1.3296	0	1		+		19891	22483	14311	14417	19502	19502					0.009555551000858031
HNYFRTITKL	10	Unmodified	_HNYFRTITKL_					0	0	0			REV__ENSG00000158158|ENST00000377075|CNNM4	REV__ENSG00000158158|ENST00000377075|CNNM4	MULTI-SECPEP	A375_MHC_IP_R2	2	431.12249755859375	3	431.575178	1291.70371	-0.49648	-0.00021427	4.2903	0.0018516	3.7938	0.0016373	431.57699065198403	18.873	0.20984	19.476	19.423	19.633	0.60308					6	5	2	0	0	0	0.94163	1	5631	5631		3.5871	0.95582	1	6052800	+		19892	20065	14312	14418	19503	19503					0.06952170071372166
HPAEQCCCCE	10	Unmodified	_HPAEQCCCCE_					0	0	0		ENSG00000134780|ENST00000257215|DAGLA	ENSG00000134780|ENST00000257215|DAGLA	ENSG00000134780|ENST00000257215|DAGLA	MSMS	A375_MHC_IP_R1	1	561.71142578125	2	561.677204	1121.33986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.243	1	87.243	86.743	87.743	0								0	0	0	0.15585	1	32008	32008		1.8442	1.3195	1				19893	4609	14313	14419	19504	19504					-0.21596053016969563
HPALVDFRRRF	11	Unmodified	_HPALVDFRRRF_					0	0	0			REV__nc|ENSG00000196535|Q92614-5|MYO18A	REV__nc|ENSG00000196535|Q92614-5|MYO18A	MSMS	A375_MHC_IP_R2	2	707.750244140625	2	707.396744	1412.77894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.96	1	144.98	144.48	145.48	0.021408								0	0	0	0.16353	1	56607	56607		0.35063	0	1		+		19894	22206	14314	14420	19505	19505					0.08905772322441408
HPARERRNR	9	Unmodified	_HPARERRNR_					0	0	0		ENST00000504707.1_1_4:120981275-120987923:-|nuORF;ENST00000296509.10_1_4:120986924-120987941:-|nuORF	ENST00000504707.1_1_4:120981275-120987923:-|nuORF	ENST00000504707.1_1_4:120981275-120987923:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	596.18896484375	2	596.331936	1190.64932	-0.62357	-0.00037185	0.94735	0.00056494	0.32379	0.00019308	596.3323979323419	128.76	1.7251	129	127.99	129.72	0.23946					62	33	2	0	0	0	0.79191	1	50391	50391		1.4819	1.4819	1	8151000			19895	12824	14315	14421	19506	19506					0.06162015763175077
HPCKLKNMIL	10	Unmodified	_HPCKLKNMIL_					0	0	0			REV__nc|ENSG00000205189|Q96DT7-4|ZBTB10	REV__nc|ENSG00000205189|Q96DT7-4|ZBTB10	MULTI-SECPEP	A375_MHC_IP_R2	2	399.959228515625	3	399.559595	1195.65695	-0.44989	-0.00017976	-1.0634	-0.00042488	-1.5133	-0.00060464	399.5591500357308	24.765	0.66087	25.408	25.212	25.873	0.64368					19	10	2	0	0	0	0.92832	1	8184	8184		12.175	12.175	1	14501000	+		19896	22562	14316	14422	19507	19507					0.06695270924205943
HPCPVCEC	8	Unmodified	_HPCPVCEC_					0	0	0			REV__ENST00000333039.2_2_22:39218398-39218617:-|nuORF	REV__ENST00000333039.2_2_22:39218398-39218617:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	443.6789245605469	2	444.164059	886.313565	-0.45191	-0.00020072	-0.075289	-3.3441E-05	-0.5272	-0.00023416	444.1638782031781	65.228	0.45683	65.966	65.715	66.172	0.73811					15	8	2	0	0	0	0.972	1	24744	24744		0.79363	0	1	1010900	+		19897	23643	14317	14423	19508	19508					-0.13413954126133376
HPDKRQLQRLF	11	Unmodified	_HPDKRQLQRLF_					0	0	0			REV__nc|ENSG00000028310|Q9H8M2-3|BRD9	REV__nc|ENSG00000028310|Q9H8M2-3|BRD9	MSMS	A375_MHC_IP_R2	2	479.67120361328125	3	479.940632	1436.80007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.14	1	131.34	130.84	131.84	0.2086								0	0	0	0.16265	1	51585	51585		4.1166	2.6615	1		+		19898	16295	14318	14424	19509	19509					0.09913737631291042
HPDSKSKSMET	11	Unmodified	_HPDSKSKSMET_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|42|2|sense	L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|42|2|sense	L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|42|2|sense	MULTI-MSMS	A375_MHC_IP_R1	1	416.5958557128906	3	416.195927	1245.56595	0.26324	0.00010956	0.56043	0.00023325	0.82367	0.00034281	416.19616520542803	60.408	0.45712	60.408	60.109	60.566	0					14	8	2	0	0	0	0.7359	1	21770	21770		1.3296	0	1	1550500			19899	14269	14319	14425	19510	19510					-0.04700946310208565
HPEDDHSQV	9	Unmodified	_HPEDDHSQV_					0	0	0		nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1;nc|ENSG00000179889|Q6P996-3|PDXDC1	nc|ENSG00000179889|Q6P996-4|PDXDC1	nc|ENSG00000179889|Q6P996-4|PDXDC1	MSMS	A375_MHC_IP_R2	2	532.2186279296875	2	532.225602	1062.43665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.221	1	83.961	83.461	84.461	0.73962								0	0	0	0.15486	1	31630	31630		11.64	0.81637	1				19900	8258	14320	14426	19511	19511					-0.09206959878019916
HPEFCDEMD	9	Unmodified	_HPEFCDEMD_					0	0	0		ENSG00000198824|ENST00000361283|CHAMP1;CHAMP1|p.F560Gfs*33|1|0.03|ENSG00000198824|chr13:114325519-114325520|-/GGCAATAAGTACAATAAAATTTG|frameshift_variant	ENSG00000198824|ENST00000361283|CHAMP1	ENSG00000198824|ENST00000361283|CHAMP1	MSMS	A375_MHC_IP_R2	2	561.709716796875	2	561.696974	1121.3794	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.328	1	87.061	86.561	87.561	0.733								0	0	0	0.15486	1	32830	32830		2.3027	0.24298	1				19901	9336	14321	14427	19512	19512					-0.17643886470250436
HPEVKNVINT	10	Unmodified	_HPEVKNVINT_					0	0	0		nc|ENSG00000161513|P22570-4|FDXR;ENST00000577509.5_1_17:72858941-72868963:-|nuORF;nc|ENSG00000161513|P22570|FDXR;ENSG00000161513|ENST00000293195|FDXR;nc|ENSG00000161513|P22570-2|FDXR;nc|ENSG00000161513|P22570-7|FDXR;nc|ENSG00000161513|P22570-3|FDXR;ENST00000579482.5_1_17:72859347-72866165:-|nuORF	nc|ENSG00000161513|P22570-4|FDXR	nc|ENSG00000161513|P22570-4|FDXR	MULTI-SECPEP	A375_MHC_IP_R1	1	383.57110595703125	3	384.212017	1149.61422	0.27084	0.00010406	0.4049	0.00015557	0.67574	0.00025963	384.21211549353995	43.858	0.45685	43.858	43.502	43.959	0					12	8	2	0	0	0	0.92351	1	15217	15217		8.7518	1.2747	1	2033000			19902	6474	14322	14428	19513	19513					0.04539915392001603
HPFSDQHI	8	Unmodified	_HPFSDQHI_					0	0	0			REV__ENSG00000174951|ENST00000645652|FUT1	REV__ENSG00000174951|ENST00000645652|FUT1	MSMS	A375_MHC_IP_R2	2	490.67193603515625	2	490.732866	979.451179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.877	1	75.615	75.115	76.115	0.73752								0	0	0	0.16876	1	28420	28420		6.3541	0.59368	1		+		19903	21316	14323	14429	19514	19514					-0.03936842939185681
HPFSDQHI	8	Unmodified	_HPFSDQHI_					0	0	0			REV__ENSG00000174951|ENST00000645652|FUT1	REV__ENSG00000174951|ENST00000645652|FUT1	MSMS	A375_MHC_IP_R2	2	490.7007141113281	2	490.732866	979.451179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.077	1	75.814	75.314	76.314	0.73752								0	0	0	0.16876	1	28496	28496		6.3541	0.59368	1		+		19904	21316	14323	14429	19515	19515					-0.03936842939185681
HPGCRTCYVIG	11	Unmodified	_HPGCRTCYVIG_					0	0	0			REV__ENSG00000174807|ENST00000311330|CD248	REV__ENSG00000174807|ENST00000311330|CD248	MSMS	A375_MHC_IP_R2	2	402.633056640625	3	402.523321	1204.54813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.207	1	53.958	53.458	54.458	0.75105								0	0	0	0.16302	1	20074	20074		1.2148	0	1		+		19905	21303	14324	14430	19516	19516					-0.04595940046078795
HPGKLINN	8	Unmodified	_HPGKLINN_					0	0	0		ENST00000219069.5_1_16:3333078-3333147:+|nuORF	ENST00000219069.5_1_16:3333078-3333147:+|nuORF	ENST00000219069.5_1_16:3333078-3333147:+|nuORF	MSMS	A375_MHC_IP_R1	1	446.6592712402344	2	446.753601	891.49265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.961	1	61.961	61.461	62.461	0								0	0	0	0.16876	1	22361	22361		5.7604	2.8712	1				19906	10102	14325	14431	19517	19517					0.042563378201293744
HPGRVLLQNL	10	Unmodified	_HPGRVLLQNL_					0	0	0		ENST00000527977.5_1_11:122953793-122955421:-|nuORF;ENSG00000166250|ENST00000448775|CLMP	ENST00000527977.5_1_11:122953793-122955421:-|nuORF	ENST00000527977.5_1_11:122953793-122955421:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	383.29632568359375	3	382.896252	1145.66693	0.41255	0.00015796	-0.14298	-5.4747E-05	0.26957	0.00010322	382.896176171339	56.091	0.55651	56.091	55.841	56.397	0					24	10	3	0	0	0	0.35113	1	20065	20065		37.075	1.4624	1	6196300			19907	7047	14326	14432	19518	19518					0.09991918245486886
HPGRVLLQNL	10	Unmodified	_HPGRVLLQNL_					0	0	0		ENST00000527977.5_1_11:122953793-122955421:-|nuORF;ENSG00000166250|ENST00000448775|CLMP	ENST00000527977.5_1_11:122953793-122955421:-|nuORF	ENST00000527977.5_1_11:122953793-122955421:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	383.2961730957031	3	382.896252	1145.66693	-0.23961	-9.1745E-05	0.417	0.00015967	0.17739	6.7921E-05	382.8963392742639	55.038	0.61139	55.789	55.473	56.084	0.75075					26	11	3	0	0	0	0.19726	1	20785	20785		49.527	1.7953	1	5555600			19908	7047	14326	14432	19519	19519					0.09991918245486886
HPGSSGES	8	Unmodified	_HPGSSGES_					0	0	0		ENSG00000168517|ENST00000589230|HEXIM2	ENSG00000168517|ENST00000589230|HEXIM2	ENSG00000168517|ENST00000589230|HEXIM2	MSMS	A375_MHC_IP_R1	1	379.4927062988281	2	379.1592	756.303846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.64	1	89.64	89.14	90.14	0								0	0	0	0.16876	1	32931	32931		2.5775	0	1				19909	7314	14327	14433	19520	19520					-0.084053595439741
HPHAALQRRRR	11	Unmodified	_HPHAALQRRRR_					0	0	0			REV__ENST00000264712.7_1_2:26204855-26205287:-|nuORF	REV__ENST00000264712.7_1_2:26204855-26205287:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	699.807861328125	2	699.408509	1396.80247	-0.96572	-0.00067543	0.59911	0.00041902	-0.36661	-0.00025641	699.4085919399456	148.83	2.5413	148.83	147.46	150	0					173	103	4	0	0	0	0.73809	1	56811	56811		1.1933	0.12188	1	803350	+		19910	23242	14328	14434	19521	19521					0.11993630879601369
HPHHGAIL	8	Unmodified	_HPHHGAIL_					0	0	0		ENST00000318443.9_1_15:74006480-74006705:+|nuORF	ENST00000318443.9_1_15:74006480-74006705:+|nuORF	ENST00000318443.9_1_15:74006480-74006705:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	881.8728637695312	1	881.474046	880.46677	-0.60707	-0.00053511	-1.4568	-0.0012842	-2.0639	-0.0018193	881.4727818793164	145.04	0.19029	145.04	144.92	145.11	0					6	3	2	0	0	0	0.77839	1	55626	55626		0.79363	0.10326	1	1185500			19911	10673	14329	14435	19522	19522					0.0217548836850483
HPHLLDMKI	9	Unmodified	_HPHLLDMKI_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;nc|ENSG00000170456|Q6ZUT9-4|DENND5B;nc|ENSG00000184014|Q6IQ26-2|DENND5A;ENSG00000184014|ENST00000328194|DENND5A	ENSG00000170456|ENST00000389082|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	MULTI-MSMS	A375_MHC_IP_R2	2	369.2734680175781	3	368.539188	1102.59573	-0.13832	-5.0977E-05	-0.39979	-0.00014734	-0.53812	-0.00019832	368.5392099175792	38.573	0.45811	39.348	39.098	39.556	0.77451					19	8	3	0	0	0	0.72507	1	14231	14231		2.7352	0.64919	1	3192100			19912	7507	14330	14436	19523	19523					0.04854082216434108
HPHRPTAPRW	10	Unmodified	_HPHRPTAPRW_					0	0	0			REV__ENSG00000142233|ENST00000270235|NTN5	REV__ENSG00000142233|ENST00000270235|NTN5	MULTI-SECPEP	A375_MHC_IP_R1	1	419.6178283691406	3	418.891612	1253.65301	0.37722	0.00015801	1.5953	0.00066826	1.9725	0.00082627	418.8924458024888	39.163	0.55981	39.163	38.832	39.391	0					17	10	2	0	0	0	0.93799	1	13304	13304		6.1918	6.1918	1	1618300	+		19913	19302	14331	14437	19524	19524					0.03632685537013458
HPIWVLFIV	9	Unmodified	_HPIWVLFIV_					0	0	0		ENST00000600997.5_1_19:18702792-18702987:+|nuORF	ENST00000600997.5_1_19:18702792-18702987:+|nuORF	ENST00000600997.5_1_19:18702792-18702987:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	374.63427734375	3	375.226939	1122.65899	0.39727	0.00014907	-1.1792	-0.00044245	-0.78188	-0.00029338	375.22651307538104	77.837	0.40838	77.837	77.69	78.099	0					13	7	2	0	0	0	0.77901	1	28452	28452		9.3831	5.4387	1	1708400			19914	13869	14332	14438	19525	19525					0.10256390995982656
HPKFFMANV	9	Unmodified	_HPKFFMANV_					0	0	0			REV__ENSG00000149257|ENST00000358171|SERPINH1	REV__ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	A375_MHC_IP_R2	2	364.2549743652344	3	364.188267	1089.54297	0.041673	1.5177E-05	2.8177	0.0010262	2.8593	0.0010413	364.1894100545618	27.406	0.50923	28.084	27.792	28.301	0.67857					14	9	2	0	0	0	0.64808	1	9359	9359		7.609	0	1	5091600	+		19915	19670	14333	14439	19526	19526					0.0017812415362641332
HPKIKGQRQ	9	Unmodified	_HPKIKGQRQ_					0	0	0		chr9:106278472-106279095|315|17.92|0.39|5.51|+|0|LINC01505,None|1	chr9:106278472-106279095|315|17.92|0.39|5.51|+|0|LINC01505,None|1	chr9:106278472-106279095|315|17.92|0.39|5.51|+|0|LINC01505,None|1	MULTI-SECPEP	A375_MHC_IP_R2	2	364.2549743652344	3	364.552597	1090.63596	0.069548	2.5354E-05	0.31065	0.00011325	0.3802	0.0001386	364.5525410789005	27.445	0.3058	28.124	27.843	28.149	0.67857					7	5	2	0	0	0	0.78348	1	9359	9359		4.897	3.8255	1	1019300			19916	512	14334	14440	19527	19527					0.09426764931231446
HPKLLLEKL	9	Unmodified	_HPKLLLEKL_					0	0	0			REV__nc|ENSG00000124664|O95238-2|SPDEF	REV__nc|ENSG00000124664|O95238-2|SPDEF	MSMS	A375_MHC_IP_R1	1	545.9321899414062	2	545.852784	1089.69102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.894	1	96.894	96.394	97.394	0								0	0	0	0.15486	1	35605	35605		7.609	2.3783	1		+		19917	18318	14335	14441	19528	19528					0.14975758679133833
HPKPLNAL	8	Unmodified	_HPKPLNAL_					0	0	0			REV__WDR62|p.L337F|1|0.25|ENSG00000075702|chr19:36071682-36071682|C/T|missense_variant	REV__WDR62|p.L337F|1|0.25|ENSG00000075702|chr19:36071682-36071682|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	445.6664733886719	2	445.266345	888.518136	-0.27623	-0.00012299	0.25594	0.00011396	-0.020287	-9.0329E-06	445.2663846257495	66.606	0.76471	66.606	66.326	67.091	0					25	14	2	0	0	0	0.77123	1	24091	24091		14.582	2.0501	1	12877000	+		19918	16661	14336	14442	19529	19529					0.0694181234256348
HPKPLNAL	8	Unmodified	_HPKPLNAL_					0	0	0			REV__WDR62|p.L337F|1|0.25|ENSG00000075702|chr19:36071682-36071682|C/T|missense_variant	REV__WDR62|p.L337F|1|0.25|ENSG00000075702|chr19:36071682-36071682|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	445.6661071777344	2	445.266345	888.518136	-0.53926	-0.00024012	0.2124	9.4574E-05	-0.32686	-0.00014554	445.26635496954503	65.561	0.71224	66.299	65.968	66.68	0.73811					30	13	3	0	0	0	0.82569	1	24820	24820		20.871	0	1	15106000	+		19919	16661	14336	14442	19530	19530					0.0694181234256348
HPKPLNAL	8	Unmodified	_HPKPLNAL_					0	0	0			REV__WDR62|p.L337F|1|0.25|ENSG00000075702|chr19:36071682-36071682|C/T|missense_variant	REV__WDR62|p.L337F|1|0.25|ENSG00000075702|chr19:36071682-36071682|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	445.266345	888.518136	-0.27623	-0.00012299	0.25594	0.00011396	-0.020287	-9.0329E-06	445.2663846257495	66.606	0.76471	66.606	66.326	67.091	0	0.15391	2.008E-05	NaN	14.582	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12877000	+		19920	16661	14336	14442							0.0694181234256348
HPKVDIKRE	9	Unmodified	_HPKVDIKRE_					0	0	0		nc|ENSG00000130783|Q6P9F0-3|CCDC62;nc|ENSG00000130783|Q6P9F0-2|CCDC62;ENSG00000130783|ENST00000253079|CCDC62	nc|ENSG00000130783|Q6P9F0-3|CCDC62	nc|ENSG00000130783|Q6P9F0-3|CCDC62	MULTI-SECPEP	A375_MHC_IP_R1	1	374.2706604003906	3	374.552374	1120.63529	0.14523	5.4397E-05	-0.48774	-0.00018268	-0.34251	-0.00012829	374.5523129594974	27.709	0.50443	27.709	27.634	28.138	0					16	9	2	0	0	0	0.80332	1	8637	8637		4.897	0	1	1540700			19921	4283	14337	14443	19531	19531					0.07979925491486028
HPKVDIKRE	9	Unmodified	_HPKVDIKRE_					0	0	0		nc|ENSG00000130783|Q6P9F0-3|CCDC62;nc|ENSG00000130783|Q6P9F0-2|CCDC62;ENSG00000130783|ENST00000253079|CCDC62	nc|ENSG00000130783|Q6P9F0-3|CCDC62	nc|ENSG00000130783|Q6P9F0-3|CCDC62	MULTI-MATCH	A375_MHC_IP_R2	2		3	374.552374	1120.63529	0.29718	0.00011131	-0.2947	-0.00011038	0.0024739	9.2661E-07	374.5522044371313	27.139	0.46016	27.818	27.587	28.047	0.67857	0.05425	7.3161E-05	NaN	2.4985	16	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1845300			19922	4283	14337	14443							0.07979925491486028
HPLHLISVR	9	Unmodified	_HPLHLISVR_					0	0	0		MET|p.S213L|1|0.36|ENSG00000105976|chr7:116699722-116699722|C/T|missense_variant	MET|p.S213L|1|0.36|ENSG00000105976|chr7:116699722-116699722|C/T|missense_variant	MET|p.S213L|1|0.36|ENSG00000105976|chr7:116699722-116699722|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	357.930908203125	3	357.885576	1070.6349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.315	1	48.315	47.815	48.815	0								0	0	0	0.15486	1	17035	17035		4.1895	1.1943	1				19923	14378	14338	14444	19532	19532					0.10240550562321005
HPLLFLLCLGI	11	Unmodified	_HPLLFLLCLGI_					0	0	0		ENSG00000180042|ENST00000572493|OR1R1P	ENSG00000180042|ENST00000572493|OR1R1P	ENSG00000180042|ENST00000572493|OR1R1P	MULTI-SECPEP	A375_MHC_IP_R1	1	620.269287109375	2	619.87012	1237.72569	-0.70529	-0.00043719	-0.79687	-0.00049396	-1.5022	-0.00093115	619.8695351100238	136.59	0.56461	136.59	136.3	136.87	0					19	10	3	0	0	0	0.99526	1	52621	52621		6.7232	2.3939	1	1180300			19924	8274	14339	14445	19533	19533					0.11633258495567134
HPLNPGFG	8	Unmodified	_HPLNPGFG_					0	0	0		PRAM1|p.S407N|1|0.38|ENSG00000133246|chr19:8498588-8498588|C/T|missense_variant	PRAM1|p.S407N|1|0.38|ENSG00000133246|chr19:8498588-8498588|C/T|missense_variant	PRAM1|p.S407N|1|0.38|ENSG00000133246|chr19:8498588-8498588|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	419.61846923828125	2	419.713945	837.413337	-0.13159	-5.523E-05	0.43906	0.00018428	0.30747	0.00012905	419.7139495958566	39.566	0.61027	40.341	39.965	40.575	0.77451					15	11	2	0	0	0	0.972	1	14479	14479		5.2307	0	1	831880			19925	15218	14340	14446	19534	19534					-0.01187309133990766
HPLYRKMK	8	Unmodified	_HPLYRKMK_					0	0	0		ENST00000465571.2_1_20:39794900-39795514:+|nuORF;nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1	ENST00000465571.2_1_20:39794900-39795514:+|nuORF	ENST00000465571.2_1_20:39794900-39795514:+|nuORF	MSMS	A375_MHC_IP_R1	1	358.2855224609375	3	358.207661	1071.60115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.135	1	48.135	47.635	48.635	0								0	0	0	0.16876	1	16963	16963		1.8442	0.6509	1				19926	3878	14341	14447	19535	19535					0.06821805798927016
HPNGRIEKQL	10	Unmodified	_HPNGRIEKQL_					0	0	0			REV__chrX:15507409-15508345|105|27.47|0.32|6.44|+|ENST00000342014|BMX,BMX	REV__chrX:15507409-15508345|105|27.47|0.32|6.44|+|ENST00000342014|BMX,BMX	MULTI-MSMS	A375_MHC_IP_R1	1	597.24853515625	2	596.333279	1190.652	-0.61982	-0.00036962	-0.80428	-0.00047962	-1.4241	-0.00084924	596.3326193962331	130.42	1.6246	130.42	129.65	131.28	0					64	31	3	0	0	0	0.71466	1	50027	50027		5.7319	0.43497	1	15422000	+		19927	15779	14342	14448	19536	19536					0.06430426377482945
HPPPPPPPP	9	Unmodified	_HPPPPPPPP_					0	0	0		ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000595164.5_1_19:39327364-39331218:-|nuORF;ENST00000597731.1_1_19:39327364-39331218:-|nuORF;ASXL3|p.P2026S|1|0.5|ENSG00000141431|chr18:33745924-33745924|C/T|missense_variant;ENSG00000048991|ENST00000683871|R3HDM1;nc|ENSG00000048991|Q15032-3|R3HDM1;nc|ENSG00000048991|Q15032|R3HDM1;nc|ENSG00000048991|Q15032-4|R3HDM1;nc|ENSG00000048991|Q15032-2|R3HDM1;nc|ENSG00000175879|P13378-2|HOXD8;ENSG00000175879|ENST00000313173|HOXD8;nc|ENSG00000172216|P17676-2|CEBPB;ENSG00000172216|ENST00000303004|CEBPB	ENSG00000104824|ENST00000221419|HNRNPL;ENSG00000048991|ENST00000683871|R3HDM1;nc|ENSG00000172216|P17676-2|CEBPB;REV__nc|ENSG00000078687|Q9HCJ0-1|TNRC6C;REV__ENSG00000106299|ENST00000223023|WASL;REV__ENSG00000204612|ENST00000376708|FOXB2	ENSG00000104824|ENST00000221419|HNRNPL	MULTI-MSMS	A375_MHC_IP_R1	1	932.875732421875	1	932.498864	931.491587	-0.058907	-5.4931E-05	-0.41749	-0.00038931	-0.4764	-0.00044424	932.4984014595891	25.139	1.2671	25.139	24.801	26.068	0					35	24	2	0	0	0	0.4782	2	7532	7532;7640		20.871	6.2895	1	3670600			19928	2539;1218;22530;7691;17439;16715	14343	14449	19537;19538	19537					0.0231012345121826
HPPPPPPPP	9	Unmodified	_HPPPPPPPP_					0	0	0		ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000595164.5_1_19:39327364-39331218:-|nuORF;ENST00000597731.1_1_19:39327364-39331218:-|nuORF;ASXL3|p.P2026S|1|0.5|ENSG00000141431|chr18:33745924-33745924|C/T|missense_variant;ENSG00000048991|ENST00000683871|R3HDM1;nc|ENSG00000048991|Q15032-3|R3HDM1;nc|ENSG00000048991|Q15032|R3HDM1;nc|ENSG00000048991|Q15032-4|R3HDM1;nc|ENSG00000048991|Q15032-2|R3HDM1;nc|ENSG00000175879|P13378-2|HOXD8;ENSG00000175879|ENST00000313173|HOXD8;nc|ENSG00000172216|P17676-2|CEBPB;ENSG00000172216|ENST00000303004|CEBPB	ENSG00000104824|ENST00000221419|HNRNPL;ENSG00000048991|ENST00000683871|R3HDM1;nc|ENSG00000172216|P17676-2|CEBPB;REV__nc|ENSG00000078687|Q9HCJ0-1|TNRC6C;REV__ENSG00000106299|ENST00000223023|WASL;REV__ENSG00000204612|ENST00000376708|FOXB2	ENSG00000104824|ENST00000221419|HNRNPL	MULTI-MATCH	A375_MHC_IP_R2	2		1	932.498864	931.491587	-0.62906	-0.0005866	-0.30079	-0.00028049	-0.92985	-0.00086709	932.4985359290314	24.594	1.0692	25.237	24.907	25.976	0.64368	0.04904	5.9973E-05	NaN	20.871	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3979400			19929	2539;1218;22530;7691;17439;16715	14343	14449							0.0231012345121826
HPQIISALEE	10	Unmodified	_HPQIISALEE_					0	0	0		chrX:153778661-153778935|452|24.45|0.0|21.22|+|0|None,SRPK3|1	chrX:153778661-153778935|452|24.45|0.0|21.22|+|0|None,SRPK3|1	chrX:153778661-153778935|452|24.45|0.0|21.22|+|0|None,SRPK3|1	MULTI-SECPEP	A375_MHC_IP_R2	2	379.5960998535156	3	379.536389	1135.58734	0.035421	1.3443E-05	0.92218	0.00035	0.9576	0.00036344	379.8711890656342	30.751	0.55402	31.469	31.216	31.77	0.71857					13	10	2	0	0	0	0.92832	1	10913	10913		12.175	4.2293	1	2129600			19930	526	14344	14450	19539	19539					0.02496806780800398
HPQLRKIENG	10	Unmodified	_HPQLRKIENG_					0	0	0			REV__ENST00000458686.5_1_2:70283008-70310715:-|nuORF	REV__ENST00000458686.5_1_2:70283008-70310715:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	596.73193359375	2	596.333279	1190.652	-0.61982	-0.00036962	-0.80428	-0.00047962	-1.4241	-0.00084924	596.3326193962331	130.42	1.6246	130.42	129.65	131.28	0					64	31	3	0	0	0	0.71245	1	50285	50285		6.7232	1.4263	1	15422000	+		19931	24952	14345	14451	19540	19540					0.06430426377460208
HPQLRKIENG	10	Unmodified	_HPQLRKIENG_					0	0	0			REV__ENST00000458686.5_1_2:70283008-70310715:-|nuORF	REV__ENST00000458686.5_1_2:70283008-70310715:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	596.73193359375	2	596.333279	1190.652	-0.61982	-0.00036962	-0.80428	-0.00047962	-1.4241	-0.00084924	596.3326193962331	130.42	1.6246	130.42	129.65	131.28	0					64	31	3	0	0	0	0.93799	1	50285	50285		6.7232	3.4419	1	15422000	+		19932	24952	14345	14451	19541	19541					0.06430426377460208
HPQLRKIENG	10	Unmodified	_HPQLRKIENG_					0	0	0			REV__ENST00000458686.5_1_2:70283008-70310715:-|nuORF	REV__ENST00000458686.5_1_2:70283008-70310715:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	596.7327880859375	2	596.333279	1190.652	-0.58309	-0.00034771	-0.84122	-0.00050165	-1.4243	-0.00084936	596.3325708552778	130.31	1.8238	130.52	129.69	131.52	0.21419					78	35	3	0	0	0	0.71245	1	51298	51298		6.7232	1.8262	1	19474000	+		19933	24952	14345	14451	19542	19542					0.06430426377460208
HPRKLIQFGLM	11	Unmodified	_HPRKLIQFGLM_					0	0	0		ENST00000467294.1_1_3:50385039-50385481:-|nuORF	ENST00000467294.1_1_3:50385039-50385481:-|nuORF	ENST00000467294.1_1_3:50385039-50385481:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	671.28515625	2	670.387	1338.75945	-0.71329	-0.00047818	-0.42857	-0.0002873	-1.1419	-0.00076548	670.3877556509308	132.17	1.5253	132.36	132	133.53	0.18953					85	29	4	0	0	0	0.73779	1	52294	52294		1.4819	0	1	17744000			19934	12279	14346	14452	19543	19543					0.10361679987317984
HPRRGSLEL	9	Unmodified	_HPRRGSLEL_					0	0	0		ENST00000532810.5_1_11:117077509-117079761:-|nuORF;ENST00000533135.1_1_11:117078559-117089797:-|nuORF;ENST00000534529.5_1_11:117078449-117094061:-|nuORF;ENSG00000160613|ENST00000320934|PCSK7	ENST00000532810.5_1_11:117077509-117079761:-|nuORF	ENST00000532810.5_1_11:117077509-117079761:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	355.4598693847656	3	355.536835	1063.58868	-0.085091	-3.0253E-05	0.8673	0.00030836	0.78221	0.0002781	355.537214273875	47.246	0.81783	47.246	46.749	47.567	0					29	15	4	0	0	0	0.76628	1	16566	16566		1.0715	0	1	2386600			19935	6428	14347	14453	19544	19544					0.05942485660239072
HPRRGSLEL	9	Unmodified	_HPRRGSLEL_					0	0	0		ENST00000532810.5_1_11:117077509-117079761:-|nuORF;ENST00000533135.1_1_11:117078559-117089797:-|nuORF;ENST00000534529.5_1_11:117078449-117094061:-|nuORF;ENSG00000160613|ENST00000320934|PCSK7	ENST00000532810.5_1_11:117077509-117079761:-|nuORF	ENST00000532810.5_1_11:117077509-117079761:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	355.536835	1063.58868	-0.085091	-3.0253E-05	0.8673	0.00030836	0.78221	0.0002781	355.537214273875	47.246	0.81783	47.246	46.749	47.567	0	0.084382	1.4423E-05	NaN	1.0715	29	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2386600			19936	6428	14347	14453							0.05942485660239072
HPRRRYLS	8	Unmodified	_HPRRRYLS_					0	0	0		ENSG00000085415|ENST00000399892|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	MULTI-MSMS	A375_MHC_IP_R2	2	362.59759521484375	3	362.208941	1083.60499	-0.22735	-8.2347E-05	1.798	0.00065125	1.5706	0.0005689	362.2096336378259	41.573	0.30573	42.348	42.198	42.504	0.77451					8	5	2	0	0	0	0.77562	1	15496	15496		10.824	0.024421	1	568320			19937	1811	14348	14454	19545	19545					0.06653611616980015
HPRRRYLS	8	Unmodified	_HPRRRYLS_					0	0	0		ENSG00000085415|ENST00000399892|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	362.208941	1083.60499	-0.22735	-8.2347E-05	1.798	0.00065125	1.5706	0.0005689	362.2096336378259	41.573	0.30573	42.348	42.198	42.504	0.77451	-0.016689	-0.00017971	NaN	10.824	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	568320			19938	1811	14348	14454							0.06653611616980015
HPRWKQVM	8	Unmodified	_HPRWKQVM_					0	0	0		ENST00000525105.5_1_8:146036031-146036349:+|nuORF	ENST00000525105.5_1_8:146036031-146036349:+|nuORF	ENST00000525105.5_1_8:146036031-146036349:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	541.1270751953125	2	541.289828	1080.5651	-0.9603	-0.0005198	-1.0088	-0.00054605	-1.9691	-0.0010659	541.2892122970645	38.152	0.56215	38.152	37.913	38.475	0					17	10	3	0	0	0	0.90224	1	12907	12907		26.341	0	1	2261600			19939	13065	14349	14455	19546	19546					0.028043486220440172
HPRWKQVM	8	Unmodified	_HPRWKQVM_					0	0	0		ENST00000525105.5_1_8:146036031-146036349:+|nuORF	ENST00000525105.5_1_8:146036031-146036349:+|nuORF	ENST00000525105.5_1_8:146036031-146036349:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	541.6884765625	2	541.289828	1080.5651	-1.3852	-0.00074982	-0.99311	-0.00053756	-2.3783	-0.0012874	541.2891423389982	37.207	0.40466	37.978	37.767	38.171	0.7709					13	7	2	0	0	0	0.73563	1	13619	13619		44.407	5.7923	1	3944000			19940	13065	14349	14455	19547	19547					0.028043486220440172
HPSVLLEAL	9	Unmodified	_HPSVLLEAL_					0	0	0		nc|ENSG00000174527|Q8N1T3-3|MYO1H;nc|ENSG00000174527|Q8N1T3|MYO1H;ENSG00000174527|ENST00000310903|MYO1H	nc|ENSG00000174527|Q8N1T3-3|MYO1H	nc|ENSG00000174527|Q8N1T3-3|MYO1H	MULTI-SECPEP	A375_MHC_IP_R1	1	490.17510986328125	2	489.784567	977.554582	-0.27438	-0.00013439	-0.20488	-0.00010035	-0.47927	-0.00023474	489.78452023705137	77.615	0.76151	77.615	77.083	77.844	0					17	14	2	0	0	0	0.71541	1	28250	28250		11.64	0	1	1125100			19941	7890	14350	14456	19548	19548					0.06490644448626881
HPSVLLEAL	9	Unmodified	_HPSVLLEAL_					0	0	0		nc|ENSG00000174527|Q8N1T3-3|MYO1H;nc|ENSG00000174527|Q8N1T3|MYO1H;ENSG00000174527|ENST00000310903|MYO1H	nc|ENSG00000174527|Q8N1T3-3|MYO1H	nc|ENSG00000174527|Q8N1T3-3|MYO1H	MULTI-SECPEP	A375_MHC_IP_R2	2	490.1747741699219	2	489.784567	977.554582	-0.54906	-0.00026892	0.30258	0.0001482	-0.24648	-0.00012072	489.7848005247594	76.601	0.55859	77.342	77.146	77.705	0.74052					17	10	2	0	0	0	0.62767	1	29037	29037		16.942	10.588	1	1247800			19942	7890	14350	14456	19549	19549					0.06490644448626881
HPTAEFGVGL	10	Unmodified	_HPTAEFGVGL_					0	0	0			REV__ENST00000455833.6_2_1:19234916-19235051:-|nuORF	REV__ENST00000455833.6_2_1:19234916-19235051:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	514.6632080078125	2	514.263999	1026.51345	-0.77108	-0.00039654	-0.39095	-0.00020105	-1.162	-0.00059759	514.263820604618	67.22	0.71059	67.956	67.75	68.461	0.73631					21	13	2	0	0	0	0.69172	1	25486	25486		32.305	11.852	1	1895000	+		19943	24931	14351	14457	19550	19550					0.001248834091484241
HPTQEMTF	8	Unmodified	_HPTQEMTF_					0	0	0		nc|ENSG00000159588|Q96LX7-5|CCDC17;ENSG00000159588|ENST00000528266|CCDC17;nc|ENSG00000159588|Q96LX7-3|CCDC17	nc|ENSG00000159588|Q96LX7-5|CCDC17	nc|ENSG00000159588|Q96LX7-5|CCDC17	MULTI-MSMS	A375_MHC_IP_R2	2	496.16009521484375	2	495.72111	989.427666	-0.44179	-0.000219	-0.2453	-0.0001216	-0.68709	-0.00034061	495.7211367307975	103.4	0.40759	104.17	103.99	104.4	0.76428					10	7	2	0	0	0	0.77488	1	39223	39223		13.508	0.97634	1	1045700			19944	6377	14352	14458	19551	19551					-0.06747024768026222
HPVDSNDL	8	Unmodified	_HPVDSNDL_					0	0	0		tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	MSMS	A375_MHC_IP_R2	2	448.60650634765625	2	448.709057	895.40356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.21	1	141.25	140.75	141.75	0.04216								0	0	0	0.16876	1	55243	55243		4.756	0	1				19945	30023	14353	14459	19552	19552					-0.04832541930056777
HPVLSHFRY	9	Unmodified	_HPVLSHFRY_					0	0	0		ENST00000426871.1_1_1:151262664-151263682:+|nuORF	ENST00000426871.1_1_1:151262664-151263682:+|nuORF	ENST00000426871.1_1_1:151262664-151263682:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	385.5858154296875	3	385.873447	1154.59851	0.10694	4.1266E-05	-1.9496	-0.00075228	-1.8426	-0.00071101	386.2070888959974	41.906	0.36003	41.906	41.622	41.982	0					8	6	2	0	0	0	0.77834	1	14426	14426		1.0715	0.67075	1	725650			19946	11814	14354	14460	19553	19553					0.027396736656100984
HPYPPCLRTSF	11	Unmodified	_HPYPPCLRTSF_					0	0	0		ENST00000508385.5_1_4:2800788-2801025:+|nuORF	ENST00000508385.5_1_4:2800788-2801025:+|nuORF	ENST00000508385.5_1_4:2800788-2801025:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	439.1289978027344	3	439.885135	1316.63358	-0.27748	-0.00012206	1.5587	0.00068567	1.2813	0.00056361	440.21964942030485	27.102	0.15113	27.102	27.027	27.179	0					4	2	2	0	0	0	0.99424	1	8169	8169		2.2527	1.6259	1	1027400			19947	12877	14355	14461	19554	19554					-0.012074515887661619
HPYYEYYFDP	10	Unmodified	_HPYYEYYFDP_					0	0	0			REV__TRAPPC12|p.L459F|1|0.2|ENSG00000171853|chr2:3424621-3424621|C/T|missense_variant	REV__TRAPPC12|p.L459F|1|0.2|ENSG00000171853|chr2:3424621-3424621|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	697.6898193359375	2	697.290411	1392.56627	-0.78977	-0.0005507	-0.25504	-0.00017784	-1.0448	-0.00072854	697.2903605392765	66.247	1.4771	66.247	65.717	67.194	0					88	28	5	0	0	0	0.62155	2	24105	24105;24114		19.257	2.1441	1	64437000	+		19948	28895	14356	14462	19555;19556	19555					-0.11431203318716143
HPYYEYYFDP	10	Unmodified	_HPYYEYYFDP_					0	0	0			REV__TRAPPC12|p.L459F|1|0.2|ENSG00000171853|chr2:3424621-3424621|C/T|missense_variant	REV__TRAPPC12|p.L459F|1|0.2|ENSG00000171853|chr2:3424621-3424621|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	697.6898193359375	2	697.290411	1392.56627	-0.78977	-0.0005507	-0.25504	-0.00017784	-1.0448	-0.00072854	697.2903605392765	66.247	1.4771	66.247	65.717	67.194	0					88	28	5	0	0	0	0.87163	1	24105	24105		19.257	2.1441	1	64437000	+		19949	28895	14356	14462	19557	19557					-0.11431203318716143
HQKDIPKAL	9	Unmodified	_HQKDIPKAL_					0	0	0			REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MSMS	A375_MHC_IP_R1	1	525.2333374023438	2	525.308741	1048.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.71	1	147.71	147.21	148.21	0								0	0	0	0.15486	1	56430	56430		1.4819	0.79152	1		+		19950	22186	14357	14463	19558	19558					0.08057138088520333
HQKKKEKRS	9	Unmodified	_HQKKKEKRS_					0	0	0		TTC24|p.E470K|1|0.33|ENSG00000187862|chr1:156585183-156585183|G/A|missense_variant	TTC24|p.E470K|1|0.33|ENSG00000187862|chr1:156585183-156585183|G/A|missense_variant	TTC24|p.E470K|1|0.33|ENSG00000187862|chr1:156585183-156585183|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	390.2449645996094	3	390.235156	1167.68364	0.41304	0.00016118	-0.57871	-0.00022583	-0.16567	-6.4652E-05	390.23498509179166	107.9	0.76305	107.9	107.44	108.21	0					20	14	2	0	0	0	0.7675	1	39486	39486		0.96228	0.33545	1	1363000			19951	30091	14358	14464	19559	19559					0.10650419131411581
HQLGYAPP	8	Unmodified	_HQLGYAPP_					0	0	0		tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	441.1240234375	2	441.727052	881.439552	-0.17284	-7.635E-05	-0.059083	-2.6099E-05	-0.23193	-0.00010245	441.726995845429	47.425	0.61179	48.186	47.766	48.378	0.76127					18	11	2	0	0	0	0.972	1	17685	17685		10.183	10.183	1	972030			19952	29568	14359	14465	19560	19560					-0.005910399625349783
HQLHQQNEIYL	11	Unmodified	_HQLHQQNEIYL_					0	0	0			REV__ENST00000533630.1_1_1:156830726-156834592:+|nuORF	REV__ENST00000533630.1_1_1:156830726-156834592:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	712.2582397460938	2	711.859857	1421.70516	-0.53576	-0.00038139	-1.2955	-0.00092222	-1.8313	-0.0013036	711.8588845929042	102.28	0.60723	102.28	101.95	102.56	0					18	11	2	0	0	0	0.72649	1	37576	37576		12.241	1.4411	1	3587600	+		19953	22368	14360	14466	19561	19561					0.01117759369481064
HQLQHVFSP	9	Unmodified	_HQLQHVFSP_					0	0	0		ENST00000475688.1_1_3:50378843-50379883:-|nuORF;nc|ENSG00000004838|O75800-2|ZMYND10;ENSG00000004838|ENST00000231749|ZMYND10	ENST00000475688.1_1_3:50378843-50379883:-|nuORF	ENST00000475688.1_1_3:50378843-50379883:-|nuORF	MSMS	A375_MHC_IP_R1	1	546.70263671875	2	546.78289	1091.55123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.146	1	89.146	88.646	89.646	0								0	0	0	0.15468	1	32746	32746		13.906	0.86358	1				19954	872	14361	14467	19562	19562					0.009113943946204017
HQQVDSGG	8	Unmodified	_HQQVDSGG_					0	0	0		ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENSG00000167037|ENST00000400358|SGSM1;ENST00000480523.1_1_22:25240737-25320238:+|nuORF;nc|ENSG00000167037|Q2NKQ1|SGSM1;nc|ENSG00000167037|Q2NKQ1-3|SGSM1	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	MSMS	A375_MHC_IP_R1	1	413.98260498046875	2	414.185749	826.356944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.1	1	131.1	130.6	131.6	0								0	0	0	0.16876	1	50542	50542		2.3027	0.4585	1				19955	7149	14362	14468	19563	19563					-0.06317981761321789
HQRMHSGEKR	10	Unmodified	_HQRMHSGEKR_					0	0	0		ENSG00000166704|ENST00000551380|ZNF606	ENSG00000166704|ENST00000551380|ZNF606	ENSG00000166704|ENST00000551380|ZNF606	MULTI-MSMS	A375_MHC_IP_R1	1	423.9398498535156	3	422.547517	1264.62072	0.05825	2.4614E-05	-0.31359	-0.0001325	-0.25534	-0.00010789	422.54720366359606	55.991	1.0662	55.991	55.482	56.548	0					77	20	5	0	0	0	0.70179	1	19899	19899		7.0371	7.0371	1	17956000			19956	7103	14363	14469	19564	19564					-0.001004699282702859
HQRRRWTVK	9	Unmodified	_HQRRRWTVK_					0	0	0			REV__ENST00000464682.2_1_12:2986445-2997622:+|nuORF	REV__ENST00000464682.2_1_12:2986445-2997622:+|nuORF	MSMS	A375_MHC_IP_R1	1	422.9817199707031	3	422.914528	1265.72176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.02	1	133.02	132.52	133.52	0								0	0	0	0.15486	1	51293	51293		0.96228	0.26461	1		+		19957	21094	14364	14470	19565	19565					0.09952349836726171
HQRRYHEQRRY	11	Unmodified	_HQRRYHEQRRY_					0	0	0			REV__ENSG00000103335|ENST00000301015|PIEZO1	REV__ENSG00000103335|ENST00000301015|PIEZO1	MSMS	A375_MHC_IP_R1	1	543.6503295898438	3	543.613689	1627.81924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.072	1	86.072	85.572	86.572	0								0	0	0	0.16353	1	31553	31553		0.094841	0.011491	1		+		19958	17272	14365	14471	19566	19566					0.030440869749099875
HQRRYHEQRRY	11	Unmodified	_HQRRYHEQRRY_					0	0	0			REV__ENSG00000103335|ENST00000301015|PIEZO1	REV__ENSG00000103335|ENST00000301015|PIEZO1	MSMS	A375_MHC_IP_R1	1	814.9053344726562	2	814.916895	1627.81924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.66	1	126.66	126.16	127.16	0								0	0	0	0.16354	1	48399	48399		0.30703	0	1		+		19959	17272	14365	14471	19567	19567					0.030440869749099875
HQVKNGSEAF	10	Unmodified	_HQVKNGSEAF_					0	0	0			REV__ENSG00000006530|ENST00000649286|AGK	REV__ENSG00000006530|ENST00000649286|AGK	MULTI-MSMS	A375_MHC_IP_R1	1	558.671630859375	2	558.775262	1115.53597	-0.54362	-0.00030376	2.6656	0.0014895	2.122	0.0011857	559.2795639257102	61.061	0.81515	61.061	60.719	61.534	0					38	15	4	0	0	0	0.62155	1	22042	22042		19.257	3.4098	1	7933600	+		19960	16137	14366	14472	19568	19568					-0.017175171932422018
HQVPAVSSV	9	Unmodified	_HQVPAVSSV_					0	0	0		BRD2|p.E553Rfs*19|1|0.23|ENSG00000204256|chr6:32978197-32978198|-/A|frameshift_variant;nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2	BRD2|p.E553Rfs*19|1|0.23|ENSG00000204256|chr6:32978197-32978198|-/A|frameshift_variant	BRD2|p.E553Rfs*19|1|0.23|ENSG00000204256|chr6:32978197-32978198|-/A|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	462.6504211425781	2	462.250892	922.48723	-0.81109	-0.00037493	0.53168	0.00024577	-0.27941	-0.00012916	462.25106351525875	29.864	0.50823	30.563	30.485	30.993	0.69872					15	9	2	0	0	0	0.46465	1	10541	10541		21.537	4.4241	1	2587800			19961	250	14367	14473	19569	19569					0.02288614237670572
HQWYDVLL	8	Unmodified	_HQWYDVLL_					0	0	0		ENST00000341980.10_1_11:111630583-111631609:-|nuORF	ENST00000341980.10_1_11:111630583-111631609:-|nuORF	ENST00000341980.10_1_11:111630583-111631609:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	537.17236328125	2	537.274367	1072.53418	-0.98561	-0.00052955	0.70471	0.00037862	-0.2809	-0.00015092	537.2750772364119	135.94	0.25769	135.94	135.84	136.1	0					5	4	2	0	0	0	0.972	1	52401	52401		2.0598	0.40713	1	687680			19962	10874	14368	14474	19570	19570					0.0008147378880494216
HQYDGLVEL	9	Unmodified	_HQYDGLVEL_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;ENST00000550262.1_1_12:110770401-110771957:+|nuORF	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	A375_MHC_IP_R1	1	537.6661987304688	2	537.266739	1072.51892	-0.62396	-0.00033523	-0.10989	-5.9042E-05	-0.73386	-0.00039428	537.2666458832059	72.824	0.91299	72.824	72.575	73.488	0					27	17	2	0	0	0	0.04447	1	26499	26499		66.457	20.436	1	4554400			19963	7877	14369	14475	19571	19571					-0.014434377990482972
HQYDGLVEL	9	Unmodified	_HQYDGLVEL_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;ENST00000550262.1_1_12:110770401-110771957:+|nuORF	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-SECPEP	A375_MHC_IP_R2	2	537.6659545898438	2	537.266739	1072.51892	-1.0976	-0.00058971	-0.13267	-7.128E-05	-1.2303	-0.00066099	537.2666945896207	72.06	0.70852	72.795	72.465	73.174	0.73421					30	13	3	0	0	0	0.13208	1	27319	27319		66.457	35.82	1	4422300			19964	7877	14369	14475	19572	19572					-0.014434377990482972
HRAKPFSILR	10	Unmodified	_HRAKPFSILR_					0	0	0		ENST00000215057.6_1_19:59084858-59084921:-|nuORF	ENST00000215057.6_1_19:59084858-59084921:-|nuORF	ENST00000215057.6_1_19:59084858-59084921:-|nuORF	MSMS	A375_MHC_IP_R1	1	408.9554138183594	3	408.915646	1223.72511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.463	1	47.463	46.963	47.963	0								0	0	0	0.15341	1	16698	16698		9.7643	0.788	1				19965	10083	14370	14476	19573	19573					0.12219599890727295
HRASGPDGECD	11	Unmodified	_HRASGPDGECD_					0	0	0		ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	MULTI-MSMS	A375_MHC_IP_R2	2	571.6793823242188	2	572.227819	1142.44108	-0.086174	-4.9311E-05	1.6285	0.00093186	1.5423	0.00088254	572.2269470067112	46.78	1.1698	47.541	47.004	48.174	0.76128					45	22	3	0	0	0	0.7039	1	17519	17519		15.248	1.3424	1	2814500			19966	6722	14371	14477	19574	19574					-0.1244381872672875
HRDDWCEQSI	10	Unmodified	_HRDDWCEQSI_					0	0	0			REV__ENST00000567160.1_1_16:28504895-28506488:-|nuORF	REV__ENST00000567160.1_1_16:28504895-28506488:-|nuORF	MSMS	A375_MHC_IP_R2	2	644.7064819335938	2	644.772394	1287.53023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.18	1	82.923	82.423	83.423	0.74293								0	0	0	0.15332	1	31216	31216		10.074	1.3285	1		+		19967	26248	14372	14478	19575	19575					-0.10202983767226215
HRDERVLSL	9	Unmodified	_HRDERVLSL_					0	0	0		ENSG00000186787|ENST00000434397|SPIN2B;ENSG00000147059|ENST00000374906|SPIN2A	ENSG00000186787|ENST00000434397|SPIN2B	ENSG00000186787|ENST00000434397|SPIN2B	MULTI-SECPEP	A375_MHC_IP_R1	1	374.9332275390625	3	375.543878	1123.60981	0.47345	0.0001778	-2.6051	-0.00097832	-2.1316	-0.00080052	375.54273768841216	20.632	0.25666	20.632	20.485	20.742	0					7	4	2	0	0	0	0.75466	1	5291	5291		12.241	0.74595	1	403290			19968	5653	14373	14479	19576	19576					0.052944509690860286
HRDLRVRFV	9	Unmodified	_HRDLRVRFV_					0	0	0		ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	MULTI-MSMS	A375_MHC_IP_R2	2	399.74658203125	3	399.903629	1196.68906	-0.065968	-2.6381E-05	-0.41631	-0.00016648	-0.48228	-0.00019286	399.9033800857381	30.602	0.40282	31.321	31.064	31.467	0.71857					16	7	3	0	0	0	0.27715	1	10766	10766		23.79	19.673	1	2202700			19969	1459	14374	14480	19577	19577					0.09858142713892448
HRDLRVRFV	9	Unmodified	_HRDLRVRFV_					0	0	0		ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	MULTI-MATCH	A375_MHC_IP_R1	1		3	399.903629	1196.68906	-0.19635	-7.852E-05	0.28585	0.00011431	0.089507	3.5794E-05	399.9036261567304	31.574	0.45677	31.574	31.312	31.769	0	0.12691	0.00048648	NaN	23.79	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1510100			19970	1459	14374	14480							0.09858142713892448
HRDPLDKQY	9	Unmodified	_HRDPLDKQY_					0	0	0			REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	MSMS	A375_MHC_IP_R1	1	586.1975708007812	2	586.296362	1170.57817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.643	1	48.643	48.143	49.143	0								0	0	0	0.15283	1	17172	17172		16.942	1.0951	1		+		19971	17938	14375	14481	19578	19578					-0.00029541784874709265
HRDRQQWRRRE	11	Unmodified	_HRDRQQWRRRE_					0	0	0			REV__ENSG00000159450|ENST00000614923|TCHH	REV__ENSG00000159450|ENST00000614923|TCHH	MSMS	A375_MHC_IP_R2	2	811.740966796875	2	811.927794	1621.84104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.06	1	102.83	102.33	103.33	0.76428								0	0	0	0.1636	1	38679	38679		0	0	1		+		19972	20121	14376	14482	19579	19579					0.05498891723459565
HREQFWTSY	9	Unmodified	_HREQFWTSY_					0	0	0			REV__ENST00000474839.5_1_6:31927157-31929006:+|nuORF	REV__ENST00000474839.5_1_6:31927157-31929006:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	627.6876220703125	2	627.288537	1252.56252	-0.97152	-0.00060942	0.22416	0.00014061	-0.74736	-0.00046881	627.2882478866028	28.06	0.35572	28.739	28.553	28.909	0.67857					16	6	3	0	0	0	0.53367	1	9666	9666		18.146	0.011366	1	6576300	+		19973	25162	14377	14483	19580	19580					-0.05365828301910369
HREVWTEKRMT	11	Unmodified	_HREVWTEKRMT_					0	0	0			REV__ENST00000486482.1_1_19:10222066-10222294:+|nuORF	REV__ENST00000486482.1_1_19:10222066-10222294:+|nuORF	MSMS	A375_MHC_IP_R1	1	491.6475524902344	3	491.585749	1471.73542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.84	1	27.84	27.34	28.34	0								0	0	0	0.16286	1	8502	8502		3.8459	1.7619	1		+		19974	25323	14378	14484	19581	19581					0.01841794762981408
HREVWTEKRMT	11	Unmodified	_HREVWTEKRMT_					0	0	0			REV__ENST00000486482.1_1_19:10222066-10222294:+|nuORF	REV__ENST00000486482.1_1_19:10222066-10222294:+|nuORF	MSMS	A375_MHC_IP_R2	2	491.6475524902344	3	491.585749	1471.73542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.226	1	27.904	27.404	28.404	0.67857								0	0	0	0.16286	1	9276	9276		3.8459	0	1		+		19975	25323	14378	14484	19582	19582					0.01841794762981408
HRFPAEIHV	9	Unmodified	_HRFPAEIHV_					0	0	0		ENSG00000107159|ENST00000378357|CA9	ENSG00000107159|ENST00000378357|CA9	ENSG00000107159|ENST00000378357|CA9	MULTI-SECPEP	A375_MHC_IP_R1	1	369.6017150878906	3	369.201564	1104.58286	0.40558	0.00014974	2.7161	0.0010028	3.1217	0.0011525	369.2025305369676	37.355	1.017	37.355	36.845	37.862	0					45	19	3	0	0	0	0.61452	1	12600	12600		14.957	8.7653	1	10432000			19976	2728	14379	14485	19583	19583					0.034753871485463605
HRFPAEIHV	9	Unmodified	_HRFPAEIHV_					0	0	0		ENSG00000107159|ENST00000378357|CA9	ENSG00000107159|ENST00000378357|CA9	ENSG00000107159|ENST00000378357|CA9	MULTI-SECPEP	A375_MHC_IP_R2	2	369.6048583984375	3	369.201564	1104.58286	0.1052	3.884E-05	2.3131	0.000854	2.4183	0.00089284	369.20257781715515	36.291	0.86623	37.061	36.749	37.615	0.7709					35	16	3	0	0	0	0.16595	1	13186	13186		57.108	44.235	1	8784700			19977	2728	14379	14485	19584	19584					0.034753871485463605
HRFQQRQQWEY	11	Unmodified	_HRFQQRQQWEY_					0	0	0			REV__nc|ENSG00000166689|Q6IQ23|PLEKHA7	REV__nc|ENSG00000166689|Q6IQ23|PLEKHA7	MULTI-SECPEP	A375_MHC_IP_R1	1	536.6361083984375	3	535.927162	1604.75966	-0.73691	-0.00039493	2.2479	0.0012047	1.511	0.0008098	535.9287819473528	87.595	0.25604	87.595	87.491	87.747	0					5	4	2	0	0	0	1.0014	1	32195	32195		0.50596	0.4226	1	1242200	+		19978	20693	14380	14486	19585	19585					-0.01853228759114245
HRGPVLAV	8	Unmodified	_HRGPVLAV_					0	0	0		ENST00000595357.5_1_19:47225490-47234099:-|nuORF;ENSG00000090372|ENST00000263280|STRN4;nc|ENSG00000090372|Q9NRL3-3|STRN4	ENST00000595357.5_1_19:47225490-47234099:-|nuORF	ENST00000595357.5_1_19:47225490-47234099:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	425.15863037109375	2	424.758687	847.502821	-0.42862	-0.00018206	0.32094	0.00013632	-0.10768	-4.5739E-05	424.7587958423823	30.659	0.30355	30.659	30.503	30.806	0					10	5	2	0	0	0	0.91495	1	9784	9784		24.674	11.166	1	3957100			19979	1950	14381	14487	19586	19586					0.07296945545351718
HRHRSRSSSR	10	Unmodified	_HRHRSRSSSR_					0	0	0		ENST00000482860.1_1_7:139102272-139107083:+|nuORF;nc|ENSG00000269955|Q9Y383-3|LUC7L2;nc|ENSG00000269955|Q9Y383-2|LUC7L2;ENSG00000146963|ENST00000354926|LUC7L2;nc|ENSG00000164898|Q96HJ9-2|FMC1	ENST00000482860.1_1_7:139102272-139107083:+|nuORF	ENST00000482860.1_1_7:139102272-139107083:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	633.7384033203125	2	633.33775	1264.66095	-0.86909	-0.00055043	1.2428	0.00078711	0.37371	0.00023669	633.3385478389433	130.12	0.86302	130.12	129.75	130.62	0					29	16	2	0	0	0	0.72014	1	49970	49970		3.2813	0.28607	1	21067000			19980	5648	14382	14488	19587	19587					0.039202127865110015
HRHTHVVRRR	10	Unmodified	_HRHTHVVRRR_					0	0	0			REV__ENST00000460049.6_1_14:24033375-24036327:-|nuORF	REV__ENST00000460049.6_1_14:24033375-24036327:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	678.3174438476562	2	677.395402	1352.77625	-0.98744	-0.00066888	0.28665	0.00019417	-0.70079	-0.00047471	677.3952618534448	148.85	2.3064	148.85	147.7	150	0					157	81	4	0	0	0	0.72392	1	56990	56990		3.2813	3.2813	1	1137000	+		19981	24959	14383	14489	19588	19588					0.11397361708122844
HRHTHVVRRR	10	Unmodified	_HRHTHVVRRR_					0	0	0			REV__ENST00000460049.6_1_14:24033375-24036327:-|nuORF	REV__ENST00000460049.6_1_14:24033375-24036327:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	677.395402	1352.77625	-0.98744	-0.00066888	0.28665	0.00019417	-0.70079	-0.00047471	677.3952618534448	148.85	2.3064	148.85	147.7	150	0	-0.020471	0.00031379	NaN	3.2813	157	81	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1137000	+		19982	24959	14383	14489							0.11397361708122844
HRIHSFHVRQD	11	Unmodified	_HRIHSFHVRQD_					0	0	0		SGSM1|p.S209F|1|0.28|ENSG00000167037|chr22:24855387-24855387|C/T|missense_variant	SGSM1|p.S209F|1|0.28|ENSG00000167037|chr22:24855387-24855387|C/T|missense_variant	SGSM1|p.S209F|1|0.28|ENSG00000167037|chr22:24855387-24855387|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	716.770263671875	2	716.371258	1430.72796	-0.65767	-0.00047113	-4.3633	-0.0031257	-5.0209	-0.0035969	716.8690160628879	87.364	0.4556	88.097	87.762	88.218	0.73287					10	8	2	0	0	0	0.73078	1	33211	33211		8.1555	2.4237	1	4291700			19983	29149	14384	14490	19589	19589					0.029828232776026198
HRIINDREMRD	11	Unmodified	_HRIINDREMRD_					0	0	0		ENSG00000165527|ENST00000298316|ARF6	ENSG00000165527|ENST00000298316|ARF6	ENSG00000165527|ENST00000298316|ARF6	MULTI-MSMS	A375_MHC_IP_R1	1	486.31463623046875	3	485.580886	1453.72083	-0.50505	-0.00024524	-0.98656	-0.00047906	-1.4916	-0.0007243	485.58109590698785	132.97	1.0208	132.97	132.49	133.51	0					56	19	4	0	0	0	0.73795	1	51250	51250		1.3296	0.11481	1	7922700			19984	6966	14385	14491	19590	19590					0.012117226148347982
HRKKIFQLFWR	11	Unmodified	_HRKKIFQLFWR_					0	0	0		BDKRB1|p.E345K|1|0.45|ENSG00000100739|chr14:96264715-96264715|G/A|missense_variant	BDKRB1|p.E345K|1|0.45|ENSG00000100739|chr14:96264715-96264715|G/A|missense_variant	BDKRB1|p.E345K|1|0.45|ENSG00000100739|chr14:96264715-96264715|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	779.9571533203125	2	779.959512	1557.90447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.13	1	108.13	107.63	108.63	0								0	0	0	0.16354	1	39669	39669		0.30703	0	1				19985	231	14386	14492	19591	19591					0.14783484178678918
HRKKQRRRKFL	11	Unmodified	_HRKKQRRRKFL_					0	0	0		ENST00000315596.14_2_13:33347406-33347460:+|nuORF	ENST00000315596.14_2_13:33347406-33347460:+|nuORF	ENST00000315596.14_2_13:33347406-33347460:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	519.0643310546875	3	518.330565	1551.96987	-0.51855	-0.00026878	-0.21005	-0.00010888	-0.72861	-0.00037766	518.3303702059133	148.94	2.1762	148.96	147.63	149.8	0.018707					193	76	4	0	0	0	0.73924	1	57506	57506		0.094841	0.094841	1	1051700			19986	10654	14387	14493	19592	19592					0.2159589842437981
HRLERLVAL	9	Unmodified	_HRLERLVAL_					0	0	0		ENSG00000250673|ENST00000623665|REELD1	ENSG00000250673|ENST00000623665|REELD1	ENSG00000250673|ENST00000623665|REELD1	MULTI-MSMS	A375_MHC_IP_R2	2	369.6048583984375	3	369.564614	1105.67201	0.14331	5.2962E-05	-0.11432	-4.225E-05	0.028984	1.0712E-05	369.56455275787516	35.936	0.86582	36.699	36.435	37.301	0.76338					40	16	4	0	0	0	0.6894	1	13186	13186		7.9454	4.0691	1	31950000			19987	9848	14388	14494	19593	19593					0.12340222108082344
HRLISAVKW	9	Unmodified	_HRLISAVKW_					0	0	0		ENST00000422163.5_1_3:50264332-50264620:+|nuORF	ENST00000422163.5_1_3:50264332-50264620:+|nuORF	ENST00000422163.5_1_3:50264332-50264620:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	369.97320556640625	3	370.557459	1108.65055	0.8034	0.00029771	-1.3117	-0.00048606	-0.50831	-0.00018836	370.55699299127366	44.628	0.50824	44.628	44.42	44.928	0					14	9	2	0	0	0	0.79429	1	15691	15691		7.1017	7.1017	1	1228500			19988	11746	14389	14495	19594	19594					0.10056837079355319
HRLLAKVAFL	10	Unmodified	_HRLLAKVAFL_					0	0	0		ENST00000265000.8_1_4:174243320-174243404:+|nuORF	ENST00000265000.8_1_4:174243320-174243404:+|nuORF	ENST00000265000.8_1_4:174243320-174243404:+|nuORF	MSMS	A375_MHC_IP_R2	2	584.411376953125	2	584.371675	1166.7288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.91	1	136.02	135.52	136.52	0.11134								0	0	0	0.15531	1	53406	53406		3.5965	0.70727	1				19989	10343	14390	14496	19595	19595					0.15210269664612497
HRLWRLRQG	9	Unmodified	_HRLWRLRQG_					0	0	0		ENST00000587173.5_1_17:41170727-41174193:-|nuORF	ENST00000587173.5_1_17:41170727-41174193:-|nuORF	ENST00000587173.5_1_17:41170727-41174193:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	611.774169921875	2	611.357422	1220.70029	-0.67447	-0.00041234	-1.8068	-0.0011046	-2.4812	-0.0015169	611.3559096976767	139.8	0.61301	139.8	139.32	139.93	0					19	11	2	0	0	0	0.75523	1	53581	53581		2.0598	0	1	613230			19990	13741	14391	14497	19596	19596					0.09876964808017874
HRMKERYEHDV	11	Unmodified	_HRMKERYEHDV_					0	0	0		ENSG00000139597|ENST00000380130|N4BP2L1	ENSG00000139597|ENST00000380130|N4BP2L1	ENSG00000139597|ENST00000380130|N4BP2L1	MSMS	A375_MHC_IP_R1	1	500.47503662109375	3	500.577253	1498.70993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.458	1	81.458	80.958	81.958	0								0	0	0	0.16258	1	29767	29767		2.4348	1.1051	1				19991	5088	14392	14498	19597	19597					-0.01947679759427956
HRNVKRLSL	9	Unmodified	_HRNVKRLSL_					0	0	0			REV__nc|ENSG00000123552|Q70EL2-3|USP45	REV__nc|ENSG00000123552|Q70EL2-3|USP45	MSMS	A375_MHC_IP_R1	1	374.9332275390625	3	374.899996	1121.67816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.544	1	20.544	20.044	21.044	0								0	0	0	0.15486	1	5291	5291		8.1555	3.2585	1		+		19992	18248	14393	14499	19598	19598					0.12218740339608303
HRPELVTKL	9	Unmodified	_HRPELVTKL_					0	0	0		nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF;ENSG00000111300|ENST00000261745|NAA25	nc|ENSG00000111300|Q14CX7-2|NAA25	nc|ENSG00000111300|Q14CX7-2|NAA25	MSMS	A375_MHC_IP_R1	1	364.9448547363281	3	364.888986	1091.64513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.367	1	29.367	28.867	29.867	0								0	0	0	0.14865	1	9178	9178		23.801	4.4391	1				19993	2982	14394	14500	19599	19599					0.10297113496881138
HRPELVTKL	9	Unmodified	_HRPELVTKL_					0	0	0		nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF;ENSG00000111300|ENST00000261745|NAA25	nc|ENSG00000111300|Q14CX7-2|NAA25	nc|ENSG00000111300|Q14CX7-2|NAA25	MULTI-MSMS	A375_MHC_IP_R2	2	365.2889099121094	3	364.888986	1091.64513	-0.46005	-0.00016787	-0.45544	-0.00016618	-0.91548	-0.00033405	364.8891713119326	28.471	0.50646	29.15	28.757	29.263	0.67857					14	9	2	0	0	0	0.50355	1	9852	9852		19.626	1.4796	1	14941000			19994	2982	14394	14500	19600	19600					0.10297113496881138
HRPQEMVEYLY	11	Unmodified	_HRPQEMVEYLY_					0	0	0			REV__ENST00000560634.1_1_15:84858634-84860056:+|nuORF	REV__ENST00000560634.1_1_15:84858634-84860056:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	733.753173828125	2	732.850644	1463.68673	-0.31106	-0.00022796	1.0185	0.00074638	0.70739	0.00051841	732.8516635792552	42.917	0.35532	42.917	42.739	43.095	0					17	6	3	0	0	0	0.73332	1	14905	14905		5.7319	0.43497	1	2893900	+		19995	26135	14395	14501	19601	19601					-0.026561185967239
HRPRQSLRRRP	11	Unmodified	_HRPRQSLRRRP_					0	0	0		ENSG00000186207|ENST00000334269|LCE5A	ENSG00000186207|ENST00000334269|LCE5A	ENSG00000186207|ENST00000334269|LCE5A	MULTI-MSMS	A375_MHC_IP_R1	1	730.333984375	2	729.934891	1457.85523	-0.80167	-0.00058516	0.43931	0.00032067	-0.36235	-0.00026449	729.9350800951647	132.65	1.3188	132.65	131.78	133.1	0					95	25	5	0	0	0	0.73809	1	51119	51119		1.1933	1.1933	1	76198000			19996	8731	14396	14502	19602	19602					0.14461588942413073
HRPRQSLRRRP	11	Unmodified	_HRPRQSLRRRP_					0	0	0		ENSG00000186207|ENST00000334269|LCE5A	ENSG00000186207|ENST00000334269|LCE5A	ENSG00000186207|ENST00000334269|LCE5A	MULTI-MSMS	A375_MHC_IP_R1	1	487.3587341308594	3	486.95902	1457.85523	-0.51704	-0.00025178	0.19366	9.4306E-05	-0.32338	-0.00015747	486.95902640652577	133.48	2.5402	133.48	133	135.54	0					155	49	6	0	0	0	0.73809	1	51556	51556		0.40827	0.40827	1	231540000			19997	8731	14396	14502	19603	19603					0.14461588942413073
HRPRRCRYWIP	11	Unmodified	_HRPRRCRYWIP_					0	0	0			REV__ENSG00000183695|ENST00000329773|MRGPRX2	REV__ENSG00000183695|ENST00000329773|MRGPRX2	MSMS	A375_MHC_IP_R2	2	769.9346923828125	2	770.414946	1538.81534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.13	1	136.24	135.74	136.74	0.11134								0	0	0	0.16353	1	53485	53485		0.35063	0	1		+		19998	21769	14397	14503	19604	19604					0.06748325947523881
HRQFRKRRR	9	Unmodified	_HRQFRKRRR_					0	0	0			REV__ENSG00000170122|ENST00000382500|FOXD4	REV__ENSG00000170122|ENST00000382500|FOXD4	MULTI-MSMS	A375_MHC_IP_R1	1	447.4990539550781	3	447.272939	1338.79699	-0.40035	-0.00017907	0.21112	9.4429E-05	-0.18923	-8.4637E-05	447.2728996135183	137.1	2.4479	137.1	136.82	139.27	0					107	47	6	0	0	0	0.77563	2	52767	52767;52787		0.23584	0.23584	1	33967000	+		19999	20967	14398	14504	19605;19606	19605					0.1411395208781414
HRQFRKRRR	9	Unmodified	_HRQFRKRRR_					0	0	0			REV__ENSG00000170122|ENST00000382500|FOXD4	REV__ENSG00000170122|ENST00000382500|FOXD4	MULTI-MSMS	A375_MHC_IP_R2	2	447.6728820800781	3	447.272939	1338.79699	-0.15905	-7.1137E-05	-0.081077	-3.6263E-05	-0.24012	-0.0001074	447.2728018961277	137.09	2.4393	137.2	136.86	139.3	0.11134					107	47	3	0	0	0	0.77563	1	53802	53802		0.23584	0.23584	1	35363000	+		20000	20967	14398	14504	19607	19607					0.1411395208781414
HRQFRKRRRLF	11	Unmodified	_HRQFRKRRRLF_					0	0	0			REV__ENSG00000170122|ENST00000382500|FOXD4	REV__ENSG00000170122|ENST00000382500|FOXD4	MULTI-SECPEP	A375_MHC_IP_R1	1	533.6875610351562	3	533.990431	1598.94946	-0.66439	-0.00035478	0.62447	0.00033346	-0.039929	-2.1322E-05	534.3250783920014	40.273	0.30602	40.273	40.1	40.406	0					9	5	2	0	0	0	1.0015	1	13813	13813		0.094841	0	1	1084300	+		20001	20967	14399	14505	19608	19608					0.173947277645766
HRQFRKRRRLF	11	Unmodified	_HRQFRKRRRLF_					0	0	0			REV__ENSG00000170122|ENST00000382500|FOXD4	REV__ENSG00000170122|ENST00000382500|FOXD4	MULTI-SECPEP	A375_MHC_IP_R2	2	533.6874389648438	3	533.990431	1598.94946	-0.849	-0.00045336	0.82014	0.00043795	-0.028857	-1.5409E-05	533.99102094222	39.419	0.35545	40.194	39.914	40.269	0.77451					11	6	3	0	0	0	1.0015	1	14577	14577		0.094841	0	1	2406700	+		20002	20967	14399	14505	19609	19609					0.173947277645766
HRRARRRVRRR	11	Unmodified	_HRRARRRVRRR_					0	0	0			REV__ENST00000575334.5_3_16:4463394-4466616:-|nuORF	REV__ENST00000575334.5_3_16:4463394-4466616:-|nuORF	MSMS	A375_MHC_IP_R1	1	787.5823364257812	2	787.999223	1573.98389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.31	1	107.31	106.81	107.81	0								0	0	0	0.1636	1	39376	39376		0	0	1		+		20003	26303	14400	14506	19610	19610					0.21985988696019376
HRRARRRVRRR	11	Unmodified	_HRRARRRVRRR_					0	0	0			REV__ENST00000575334.5_3_16:4463394-4466616:-|nuORF	REV__ENST00000575334.5_3_16:4463394-4466616:-|nuORF	MSMS	A375_MHC_IP_R2	2	788.4528198242188	2	787.999223	1573.98389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.98	1	113.71	113.21	114.21	0.72458								0	0	0	0.1636	1	42596	42596		0	0	1		+		20004	26303	14400	14506	19611	19611					0.21985988696019376
HRRGQLKHQRR	11	Unmodified	_HRRGQLKHQRR_					0	0	0			REV__ENST00000361673.3_1_18:56246097-56246205:-|nuORF	REV__ENST00000361673.3_1_18:56246097-56246205:-|nuORF	MSMS	A375_MHC_IP_R2	2	736.4320678710938	2	736.432516	1470.85048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.24	1	119.77	119.27	120.27	0.5321								0	0	0	0.15183	1	45393	45393		19.362	3.2128	1		+		20005	23919	14401	14507	19612	19612					0.13388704799695006
HRRLDVKRQF	10	Unmodified	_HRRLDVKRQF_					0	0	0			REV__nc|ENSG00000165702|Q5VTD9-2|GFI1B	REV__nc|ENSG00000165702|Q5VTD9-2|GFI1B	MSMS	A375_MHC_IP_R1	1	677.7955322265625	2	677.894369	1353.77419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.71	1	140.71	140.21	141.21	0								0	0	0	0.15596	1	54034	54034		1.4819	0.28856	1		+		20006	20290	14402	14508	19613	19613					0.11144888179660484
HRRLYETF	8	Unmodified	_HRRLYETF_					0	0	0			REV__ENST00000351773.7_1_10:38407933-38408194:+|nuORF	REV__ENST00000351773.7_1_10:38407933-38408194:+|nuORF	MSMS	A375_MHC_IP_R1	1	374.433349609375	3	374.533202	1120.57778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.543	1	41.543	41.043	42.043	0								0	0	0	0.16876	1	14350	14350		3.5965	0	1		+		20007	23796	14403	14509	19614	19614					0.022310832859147922
HRRPRRQWN	9	Unmodified	_HRRPRRQWN_					0	0	0			REV__ENSG00000163013|ENST00000520530|FBXO41	REV__ENSG00000163013|ENST00000520530|FBXO41	MSMS	A375_MHC_IP_R2	2	653.4232177734375	2	653.361028	1304.7075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.052	1	12.596	12.096	13.096	0.54443								0	0	0	0.15486	1	3731	3731		0.52476	0.12405	1		+		20008	20329	14404	14510	19615	19615					0.06733697408458283
HRRPSPRRLPR	11	Unmodified	_HRRPSPRRLPR_					0	0	0		ENSG00000230778|ENST00000434396|ANKRD63	ENSG00000230778|ENST00000434396|ANKRD63	ENSG00000230778|ENST00000434396|ANKRD63	MULTI-MSMS	A375_MHC_IP_R1	1	715.3328247070312	2	714.431984	1426.84942	-0.93853	-0.00067052	0.7436	0.00053125	-0.19494	-0.00013927	714.4323812392118	142.49	1.0635	142.49	141.78	142.84	0					37	20	3	0	0	0	0.73809	1	54715	54715		1.1933	0.735	1	3049200			20009	9720	14405	14511	19616	19616					0.1530649043077119
HRRPSPRRLPR	11	Unmodified	_HRRPSPRRLPR_					0	0	0		ENSG00000230778|ENST00000434396|ANKRD63	ENSG00000230778|ENST00000434396|ANKRD63	ENSG00000230778|ENST00000434396|ANKRD63	MULTI-MSMS	A375_MHC_IP_R2	2	477.0235595703125	3	476.623748	1426.84942	-0.34307	-0.00016351	0.080912	3.8564E-05	-0.26215	-0.00012495	476.62368976635076	138	1.9662	138.08	137.76	139.72	0.083969					108	38	6	0	0	0	0.73902	1	54120	54120		0.08335	0.08335	1	36014000			20010	9720	14405	14511	19617	19617					0.1530649043077119
HRRPSPSRS	9	Unmodified	_HRRPSPSRS_					0	0	0			REV__SRSF11|p.K364Q|1|0.08|ENSG00000116754|chr1:70250019-70250019|A/C|missense_variant	REV__SRSF11|p.K364Q|1|0.08|ENSG00000116754|chr1:70250019-70250019|A/C|missense_variant	MSMS	A375_MHC_IP_R2	2	540.23583984375	2	540.294488	1078.57442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.48	1	134.62	134.12	135.12	0.13901								0	0	0	0.15486	1	52901	52901		6.2058	1.4498	1		+		20011	17970	14406	14512	19618	19618					0.03827833231957811
HRRRAVTR	8	Unmodified	_HRRRAVTR_					0	0	0		ENST00000586801.1_1_17:40839581-40839674:+|nuORF	ENST00000586801.1_1_17:40839581-40839674:+|nuORF	ENST00000586801.1_1_17:40839581-40839674:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	351.6159973144531	3	351.216319	1050.62713	-0.21282	-7.4747E-05	-0.97385	-0.00034203	-1.1867	-0.00041678	351.2159454141477	44.364	0.35487	45.133	44.934	45.289	0.76909					10	6	2	0	0	0	0.77602	1	16605	16605		9.3831	0	1	1738100			20012	13735	14407	14513	19619	19619					0.10383836085384246
HRRRAVTR	8	Unmodified	_HRRRAVTR_					0	0	0		ENST00000586801.1_1_17:40839581-40839674:+|nuORF	ENST00000586801.1_1_17:40839581-40839674:+|nuORF	ENST00000586801.1_1_17:40839581-40839674:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	351.216319	1050.62713	0.15451	5.4266E-05	-0.49878	-0.00017518	-0.34427	-0.00012091	351.21611422427725	45.435	0.45354	45.435	45.284	45.738	0	0.15066	0.00028448	NaN	9.3831	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1133900			20013	13735	14407	14513							0.10383836085384246
HRRRFRRKPHR	11	Unmodified	_HRRRFRRKPHR_					0	0	0		nc|ENSG00000241127|Q9NRH1-2|YAE1	nc|ENSG00000241127|Q9NRH1-2|YAE1	nc|ENSG00000241127|Q9NRH1-2|YAE1	MULTI-MSMS	A375_MHC_IP_R1	1	535.0574340820312	3	534.657675	1600.9512	-1.0382	-0.00055511	0.47468	0.00025379	-0.56357	-0.00030132	534.6576972176841	148.72	2.1802	148.72	147.71	149.89	0					155	68	4	0	0	0	0.73925	2	56601	56601;56814		0.08335	0.08335	1	686200			20014	14912	14408	14514	19620;19621	19620					0.17475781573170934
HRRRFRRKPHR	11	Unmodified	_HRRRFRRKPHR_					0	0	0		nc|ENSG00000241127|Q9NRH1-2|YAE1	nc|ENSG00000241127|Q9NRH1-2|YAE1	nc|ENSG00000241127|Q9NRH1-2|YAE1	MULTI-MSMS	A375_MHC_IP_R2	2	535.056884765625	3	534.657675	1600.9512	-0.60589	-0.00032394	-0.088937	-4.7551E-05	-0.69482	-0.00037149	534.6575192594339	148.82	2.5238	148.84	147.48	150.01	0.018707					186	111	3	0	0	0	0.73925	2	57787	57787;57914		0.08335	0.08335	1	521920			20015	14912	14408	14514	19622;19623	19622					0.17475781573170934
HRRRSLRFREW	11	Unmodified	_HRRRSLRFREW_					0	0	0			REV__ENSG00000225968|ENST00000424383|ELFN1	REV__ENSG00000225968|ENST00000424383|ELFN1	MSMS	A375_MHC_IP_R2	2	533.6678466796875	3	533.634424	1597.88144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.224	1	81.969	81.469	82.469	0.74474								0	0	0	0.1635	1	30842	30842		0.50596	0.051438	1		+		20016	22719	14409	14515	19624	19624					0.10641858113945091
HRRRSSRRRRC	11	Unmodified	_HRRRSSRRRRC_					0	0	0		ENST00000605386.1_1_12:90102939-90103125:+|nuORF	ENST00000605386.1_1_12:90102939-90103125:+|nuORF	ENST00000605386.1_1_12:90102939-90103125:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	509.689697265625	3	509.290775	1524.8505	-0.69454	-0.00035372	-1.1465	-0.00058392	-1.8411	-0.00093764	509.2901732714148	132.54	0.51076	132.73	132.46	132.97	0.18953					14	9	2	0	0	0	0.73897	1	52153	52153		0.094841	0.021578	1	2308000			20017	13906	14410	14516	19625	19625					0.1090638152804786
HRRYYHDHWRL	11	Unmodified	_HRRYYHDHWRL_					0	0	0		ENSG00000188070|ENST00000433688|ZFTA	ENSG00000188070|ENST00000433688|ZFTA	ENSG00000188070|ENST00000433688|ZFTA	MSMS	A375_MHC_IP_R2	2	546.9131469726562	3	546.943147	1637.80761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.165	1	83.904	83.404	84.404	0.73962								0	0	0	0.16358	1	31607	31607		0.094841	0.094841	1				20018	8881	14411	14517	19626	19626					0.01421889951598132
HRRYYHDHWRL	11	Unmodified	_HRRYYHDHWRL_					0	0	0		ENSG00000188070|ENST00000433688|ZFTA	ENSG00000188070|ENST00000433688|ZFTA	ENSG00000188070|ENST00000433688|ZFTA	MSMS	A375_MHC_IP_R2	2	547.0176391601562	3	546.943147	1637.80761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.301	1	84.041	83.541	84.541	0.73962								0	0	0	0.16358	1	31661	31661		0.094841	0.094841	1				20019	8881	14411	14517	19627	19627					0.01421889951598132
HRSPLVLAY	9	Unmodified	_HRSPLVLAY_					0	0	0		nc|ENSG00000264522|Q6GQQ9-2|OTUD7B;ENSG00000264522|ENST00000581312|OTUD7B	nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	MULTI-MSMS	A375_MHC_IP_R1	1	528.7028198242188	2	528.303458	1054.59236	-0.48511	-0.00025629	0.15856	8.377E-05	-0.32655	-0.00017251	528.3034780504491	50.916	0.65778	50.916	50.613	51.27	0					26	12	3	0	0	0	0.2487	1	18060	18060		34.402	5.9149	1	4873900			20020	9954	14412	14518	19628	19628					0.06725155434082808
HRSPLVLAY	9	Unmodified	_HRSPLVLAY_					0	0	0		nc|ENSG00000264522|Q6GQQ9-2|OTUD7B;ENSG00000264522|ENST00000581312|OTUD7B	nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	MULTI-SECPEP	A375_MHC_IP_R2	2	528.702880859375	2	528.303458	1054.59236	-0.76727	-0.00040535	-0.049591	-2.6199E-05	-0.81686	-0.00043155	528.3033774923248	49.931	0.66301	50.685	50.394	51.057	0.75406					27	12	3	0	0	0	0.75214	1	18740	18740		16.149	0.30192	1	4555400			20021	9954	14412	14518	19629	19629					0.06725155434082808
HRVPPDVAR	9	Unmodified	_HRVPPDVAR_					0	0	0			REV__ENSG00000185585|ENST00000373580|OLFML2A	REV__ENSG00000185585|ENST00000373580|OLFML2A	MULTI-SECPEP	A375_MHC_IP_R1	1	523.6889038085938	2	523.796332	1045.57811	-0.77858	-0.00040782	-1.2741	-0.00066739	-2.0527	-0.0010752	523.7956446197555	23.695	0.20315	23.695	23.584	23.787	0					5	3	2	0	0	0	0.77396	1	6503	6503		6.2058	1.4498	1	2250100	+		20022	21901	14413	14519	19630	19630					0.05714503005788174
HRVPPDVAR	9	Unmodified	_HRVPPDVAR_					0	0	0			REV__ENSG00000185585|ENST00000373580|OLFML2A	REV__ENSG00000185585|ENST00000373580|OLFML2A	MULTI-MATCH	A375_MHC_IP_R2	2		2	523.796332	1045.57811	-0.88582	-0.00046399	-1.7628	-0.00092333	-2.6486	-0.0013873	523.7955368128138	22.786	0.2554	23.416	23.265	23.521	0.63014	-0.13947	-0.00030811	NaN	6.2058	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	699120	+		20023	21901	14413	14519							0.05714503005788174
HRYDMGALQY	10	Unmodified	_HRYDMGALQY_					0	0	0		ENSG00000182968|ENST00000330949|SOX1	ENSG00000182968|ENST00000330949|SOX1	ENSG00000182968|ENST00000330949|SOX1	MULTI-MSMS	A375_MHC_IP_R1	1	627.6876831054688	2	627.290222	1252.56589	-0.59916	-0.00037585	-2.1938	-0.0013761	-2.7929	-0.001752	627.2883321087832	28.77	0.40379	28.77	28.541	28.945	0					20	7	4	0	0	0	0.60608	1	8910	8910		20.415	0	1	7028600			20024	8452	14414	14520	19631	19631					-0.05028901519540341
HRYPNQVYY	9	Unmodified	_HRYPNQVYY_					0	0	0		ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	MULTI-MSMS	A375_MHC_IP_R1	1	620.6986694335938	2	620.298904	1238.58326	-0.43951	-0.00027263	-0.19107	-0.00011852	-0.63058	-0.00039115	620.2988066249552	28.751	0.91226	28.751	28.491	29.403	0					57	17	6	0	0	0	0.017727	1	8864	8864		108	84.849	1	137560000			20025	7654	14415	14521	19632	19632					-0.026492379222418094
HRYPNQVYY	9	Unmodified	_HRYPNQVYY_					0	0	0		ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	MULTI-SECPEP	A375_MHC_IP_R1	1	414.26812744140625	3	413.868362	1238.58326	0.28793	0.00011917	-1.0154	-0.00042022	-0.72742	-0.00030105	413.86812220274504	28.761	1.114	28.761	28.138	29.252	0					43	21	4	0	0	0	0.30925	1	8901	8901		49.554	29.14	1	22860000			20026	7654	14415	14521	19633	19633					-0.026492379222418094
HRYPNQVYY	9	Unmodified	_HRYPNQVYY_					0	0	0		ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	MULTI-MSMS	A375_MHC_IP_R2	2	620.69873046875	2	620.298904	1238.58326	-0.86331	-0.00053551	0.043871	2.7213E-05	-0.81944	-0.0005083	620.298959675643	28.053	0.81152	28.731	28.452	29.263	0.67857					47	15	5	0	0	0	0.015356	1	9614	9614		112.59	89.445	1	167190000			20027	7654	14415	14521	19634	19634					-0.026492379222418094
HRYPNQVYY	9	Unmodified	_HRYPNQVYY_					0	0	0		ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	MULTI-SECPEP	A375_MHC_IP_R2	2	414.26812744140625	3	413.868362	1238.58326	-0.13909	-5.7563E-05	-0.71073	-0.00029415	-0.84982	-0.00035171	413.8682427756784	28.053	1.0133	28.731	28.098	29.112	0.67857					51	19	5	0	0	0	0.37663	1	9633	9633		36.506	17.785	1	36528000			20028	7654	14415	14521	19635	19635					-0.026492379222418094
HSAPKNLAK	9	Unmodified	_HSAPKNLAK_					0	0	0			REV__APOL2|p.L59P|1|0.46|ENSG00000128335|chr22:36228242-36228242|A/G|missense_variant	REV__APOL2|p.L59P|1|0.46|ENSG00000128335|chr22:36228242-36228242|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	483.6798095703125	2	483.279983	964.545414	-0.43018	-0.0002079	-0.43	-0.00020781	-0.86018	-0.00041571	483.2797487323655	25.573	0.50875	25.573	25.408	25.917	0					12	9	2	0	0	0	0.2002	1	7501	7501		37.974	6.7057	1	5918100	+		20029	15428	14416	14522	19636	19636					0.06172295882936396
HSAPKNLAK	9	Unmodified	_HSAPKNLAK_					0	0	0			REV__APOL2|p.L59P|1|0.46|ENSG00000128335|chr22:36228242-36228242|A/G|missense_variant	REV__APOL2|p.L59P|1|0.46|ENSG00000128335|chr22:36228242-36228242|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	483.6794128417969	2	483.279983	964.545414	-0.98456	-0.00047582	-0.037913	-1.8323E-05	-1.0225	-0.00049414	483.2799139481295	24.846	0.4574	25.49	25.364	25.822	0.64368					10	8	2	0	0	0	0.11296	1	8234	8234		48.346	10.17	1	5005300	+		20030	15428	14416	14522	19637	19637					0.06172295882936396
HSAPKNLAK	9	Unmodified	_HSAPKNLAK_					0	0	0			REV__APOL2|p.L59P|1|0.46|ENSG00000128335|chr22:36228242-36228242|A/G|missense_variant	REV__APOL2|p.L59P|1|0.46|ENSG00000128335|chr22:36228242-36228242|A/G|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	483.279983	964.545414	-0.43018	-0.0002079	-0.43	-0.00020781	-0.86018	-0.00041571	483.2797487323655	25.573	0.50875	25.573	25.408	25.917	0	0.041547	-0.00021659	NaN	48.346	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5918100	+		20031	15428	14416	14522							0.06172295882936396
HSAPKNLAK	9	Unmodified	_HSAPKNLAK_					0	0	0			REV__APOL2|p.L59P|1|0.46|ENSG00000128335|chr22:36228242-36228242|A/G|missense_variant	REV__APOL2|p.L59P|1|0.46|ENSG00000128335|chr22:36228242-36228242|A/G|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	483.279983	964.545414	-0.98456	-0.00047582	-0.037913	-1.8323E-05	-1.0225	-0.00049414	483.2799139481295	24.846	0.4574	25.49	25.364	25.822	0.64368	-0.041547	0.00016239	NaN	48.346	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5005300	+		20032	15428	14416	14522							0.06172295882936396
HSATHSVIEKT	11	Unmodified	_HSATHSVIEKT_					0	0	0		ENSG00000180423|ENST00000326737|HARBI1	ENSG00000180423|ENST00000326737|HARBI1	ENSG00000180423|ENST00000326737|HARBI1	MSMS	A375_MHC_IP_R2	2	403.9278564453125	3	403.878926	1208.61495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.341	1	41.116	40.616	41.616	0.77451								0	0	0	0.16124	1	14935	14935		12.228	1.3286	1				20033	8295	14417	14523	19638	19638					0.01898710041018603
HSCGCCMGCG	10	Unmodified	_HSCGCCMGCG_					0	0	0		ENSG00000173335|ENST00000376971|CST9	ENSG00000173335|ENST00000376971|CST9	ENSG00000173335|ENST00000376971|CST9	MSMS	A375_MHC_IP_R1	1	479.1475524902344	2	479.128836	956.243119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.13	1	102.13	101.63	102.63	0								0	0	0	0.15642	1	37530	37530		0	0	1				20034	7790	14418	14524	19639	19639					-0.2367531877773672
HSDCLSTCDD	10	Unmodified	_HSDCLSTCDD_					0	0	0			REV__ENST00000378588.4_1_X:37651289-37652945:+|nuORF	REV__ENST00000378588.4_1_X:37651289-37652945:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	548.6478881835938	2	548.189513	1094.36447	-0.68284	-0.00037433	2.1304	0.0011678	1.4475	0.00079351	548.6920347482163	40.005	0.55984	40.005	39.694	40.254	0					30	10	4	0	0	0	0.69306	2	13759	13686;13759		13.906	3.6593	1	4214000	+		20035	24181	14419	14525	19640;19641	19641					-0.17893378338226285
HSDCLSTCDD	10	Unmodified	_HSDCLSTCDD_					0	0	0			REV__ENST00000378588.4_1_X:37651289-37652945:+|nuORF	REV__ENST00000378588.4_1_X:37651289-37652945:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	548.647705078125	2	548.189513	1094.36447	-0.86375	-0.0004735	2.3192	0.0012713	1.4554	0.00079785	548.6921505226187	39.42	0.50806	40.195	39.914	40.422	0.77451					27	9	4	0	0	0	0.69306	4	14496	14454;14496;14546;14580		13.906	0	1	3632900	+		20036	24181	14419	14525	19642;19643;19644;19645	19643					-0.17893378338226285
HSDCLSTCDD	10	Unmodified	_HSDCLSTCDD_					0	0	0			REV__ENST00000378588.4_1_X:37651289-37652945:+|nuORF	REV__ENST00000378588.4_1_X:37651289-37652945:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	548.177978515625	2	548.189513	1094.36447	-0.86375	-0.0004735	2.3192	0.0012713	1.4554	0.00079785	548.6921505226187	39.42	0.50806	40.195	39.914	40.422	0.77451					27	9	4	0	0	0	0.91909	1	14546	14546		13.906	0	1	3632900	+		20037	24181	14419	14525	19646	19646					-0.17893378338226285
HSDCLSTCDD	10	Unmodified	_HSDCLSTCDD_					0	0	0			REV__ENST00000378588.4_1_X:37651289-37652945:+|nuORF	REV__ENST00000378588.4_1_X:37651289-37652945:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	548.189513	1094.36447	-0.68284	-0.00037433	2.1304	0.0011678	1.4475	0.00079351	548.6920347482163	40.005	0.55984	40.005	39.694	40.254	0	-0.094772	-8.7787E-05	NaN	13.906	30	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4214000	+		20038	24181	14419	14525							-0.17893378338226285
HSDIFPARHY	10	Unmodified	_HSDIFPARHY_					0	0	0		ENSG00000178425|ENST00000319550|NT5DC1;nc|ENSG00000178425|Q5TFE4-2|NT5DC1	ENSG00000178425|ENST00000319550|NT5DC1	ENSG00000178425|ENST00000319550|NT5DC1	MULTI-MSMS	A375_MHC_IP_R2	2	415.6067810058594	3	414.871995	1241.59415	0.068356	2.8359E-05	0.85743	0.00035572	0.92578	0.00038408	415.2068092617796	27.357	0.35639	28.036	27.843	28.2	0.67857					16	6	3	0	0	0	0.060376	1	9348	9348		55.249	41.634	1	5639200			20039	8160	14420	14526	19647	19647					-0.01697835547952309
HSDLPFHGYHY	11	Unmodified	_HSDLPFHGYHY_					0	0	0			REV__nc|ENSG00000159263|Q14190-2|SIM2	REV__nc|ENSG00000159263|Q14190-2|SIM2	MSMS	A375_MHC_IP_R1	1	686.807373046875	2	686.807094	1371.59963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.02	1	121.02	120.52	121.52	0								0	0	0	0.16203	1	44905	44905		8.1555	0	1		+		20040	20111	14421	14527	19648	19648					-0.07130156756124961
HSDPESDFY	9	Unmodified	_HSDPESDFY_					0	0	0		ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	MULTI-MSMS	A375_MHC_IP_R1	1	549.188720703125	2	548.714536	1095.41452	-0.63149	-0.00034651	0.29572	0.00016227	-0.33577	-0.00018424	548.7146465389789	40.086	1.3189	40.086	39.694	41.013	0					58	25	3	0	0	0	0.050162	3	13858	13647;13858;13917		64.236	39.562	1	74775000			20041	3619	14422	14528	19649;19650;19651	19650					-0.12937184346424146
HSDPESDFY	9	Unmodified	_HSDPESDFY_					0	0	0		ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	MSMS	A375_MHC_IP_R1	1	548.7181396484375	2	548.714536	1095.41452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.276	1	41.276	40.776	41.776	0								0	0	0	0.1535	1	14240	14240		15.847	3.3156	1				20042	3619	14422	14528	19652	19652					-0.12937184346424146
HSDPESDFY	9	Unmodified	_HSDPESDFY_					0	0	0		ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	MULTI-MSMS	A375_MHC_IP_R2	2	549.1141357421875	2	548.714536	1095.41452	-0.8602	-0.000472	0.15398	8.4494E-05	-0.70622	-0.00038751	548.7146222520291	39.419	1.4746	40.194	39.607	41.082	0.77451					82	28	4	0	0	0	0.050162	1	14684	14684		64.236	39.562	1	110390000			20043	3619	14422	14528	19653	19653					-0.12937184346424146
HSDPESDFY	9	Unmodified	_HSDPESDFY_					0	0	0		ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	MSMS	A375_MHC_IP_R2	2	548.7183837890625	2	548.714536	1095.41452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.403	1	41.178	40.678	41.678	0.77451								0	0	0	0.1535	1	14960	14960		15.847	3.3156	1				20044	3619	14422	14528	19654	19654					-0.12937184346424146
HSDPMFSSY	9	Oxidation (M)	_HSDPM(Oxidation (M))FSSY_		HSDPM(1)FSSY		HSDPM(85)FSSY	0	0	1		nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	MULTI-MSMS	A375_MHC_IP_R1	1	544.1130981445312	2	543.713482	1085.41241	-0.57712	-0.00031379	0.056747	3.0854E-05	-0.52037	-0.00028293	543.7133567928781	34.03	0.90948	34.03	33.748	34.657	0					34	17	3	0	0	0	0.018546	2	11154	11128;11154		85.272	52.967	1	7015000			20045	5691	14423	14529	19655;19656	19656		302			-0.12687936355882812
HSDPMFSSY	9	Oxidation (M)	_HSDPM(Oxidation (M))FSSY_		HSDPM(1)FSSY		HSDPM(59)FSSY	0	0	1		nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	MULTI-MSMS	A375_MHC_IP_R2	2	544.1126098632812	2	543.713482	1085.41241	-1.1121	-0.00060469	0.037445	2.0359E-05	-1.0747	-0.00058433	543.7135283034245	33.317	0.40704	34.069	33.84	34.247	0.75225					17	7	3	0	0	0	0.064406	1	11913	11913		58.679	26.373	1	7210600			20046	5691	14423	14529	19657	19657		302			-0.12687936355882812
HSDPMFSSY	9	Oxidation (M)	_HSDPM(Oxidation (M))FSSY_		HSDPM(1)FSSY		HSDPM(85)FSSY	0	0	1		nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	MULTI-SECPEP	A375_MHC_IP_R2	2	544.1132202148438	2	543.713482	1085.41241	-1.3462	-0.00073196	0.49634	0.00026987	-0.84988	-0.00046209	543.7136766309436	33.741	0.50507	34.493	34.298	34.803	0.75225					21	9	3	0	0	0	0.037185	1	12174	12174		85.272	52.967	1	4925900			20047	5691	14423	14529	19658	19658		302			-0.12687936355882812
HSDPMFSSY	9	Unmodified	_HSDPMFSSY_					0	0	0		nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	MULTI-MSMS	A375_MHC_IP_R1	1	536.2318115234375	2	535.716024	1069.4175	-0.54543	-0.0002922	-0.07107	-3.8073E-05	-0.6165	-0.00033027	535.7158839111001	49.973	0.61293	49.973	49.642	50.254	0					20	11	2	0	0	0	0.32092	1	17611	17611		29.082	13.234	1	4016200			20048	5691	14423	14530	19659	19659					-0.11443632493251243
HSDPMFSSY	9	Unmodified	_HSDPMFSSY_					0	0	0		nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	MULTI-MSMS	A375_MHC_IP_R2	2	536.6583862304688	2	535.716024	1069.4175	-1.0594	-0.00056756	0.20394	0.00010925	-0.8555	-0.00045831	535.7160440181627	49.151	0.65803	49.909	49.639	50.297	0.75737					29	12	3	0	0	0	0.69674	1	18438	18438		7.2892	2.5332	1	4041700			20049	5691	14423	14530	19660	19660					-0.11443632493251243
HSDPRQTFLY	10	Unmodified	_HSDPRQTFLY_					0	0	0		nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-2|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A;ENSG00000082269|ENST00000418814|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	MULTI-MSMS	A375_MHC_IP_R1	1	632.7095336914062	2	632.309469	1262.60439	-0.06888	-4.3553E-05	-0.32123	-0.00020312	-0.39011	-0.00024667	632.3093622580782	44.938	0.50597	44.938	44.626	45.132	0					21	9	3	0	0	0	0.13916	1	15677	15677		71.708	48.972	1	4341300			20050	1756	14424	14531	19661	19661					-0.01641272613392175
HSDPRQTFLY	10	Unmodified	_HSDPRQTFLY_					0	0	0		nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-2|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A;ENSG00000082269|ENST00000418814|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	MULTI-MSMS	A375_MHC_IP_R2	2	632.70947265625	2	632.309469	1262.60439	-0.63407	-0.00040093	-0.092667	-5.8594E-05	-0.72674	-0.00045953	632.3094566321453	44.036	0.55624	44.805	44.53	45.086	0.7691					25	10	3	0	0	0	0.12083	1	16417	16417		75.571	52.834	1	4485400			20051	1756	14424	14531	19662	19662					-0.01641272613392175
HSDPSILGY	9	Unmodified	_HSDPSILGY_					0	0	0		ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	MULTI-MSMS	A375_MHC_IP_R1	1	495.139892578125	2	494.740357	987.46616	-0.40123	-0.0001985	-0.020737	-1.026E-05	-0.42197	-0.00020876	494.74032540318854	58.049	1.9297	58.049	57.518	59.448	0					114	37	5	0	0	0	0.018481	3	20716	20716;20941;21167		85.357	45.407	1	128870000			20052	5639	14425	14532	19663;19664;19665	19663					-0.028073958618506367
HSDPSILGY	9	Unmodified	_HSDPSILGY_					0	0	0		ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	MULTI-MSMS	A375_MHC_IP_R2	2	495.1402893066406	2	494.740357	987.46616	-0.84841	-0.00041974	-0.022463	-1.1113E-05	-0.87087	-0.00043085	494.740319174445	57.196	1.626	57.946	57.459	59.085	0.7501					107	31	5	0	0	0	0.03063	1	21524	21524		74.423	32.583	1	152790000			20053	5639	14425	14532	19666	19666					-0.028073958618506367
HSDQQVFEY	9	Unmodified	_HSDQQVFEY_					0	0	0		ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4	ENSG00000141076|ENST00000314423|UTP4	ENSG00000141076|ENST00000314423|UTP4	MULTI-MSMS	A375_MHC_IP_R1	1	577.2054443359375	2	576.751453	1151.48835	-0.22593	-0.00013031	-0.53953	-0.00031117	-0.76546	-0.00044148	576.7513182913307	46.481	1.2197	46.481	46.043	47.263	0					67	23	5	0	0	0	0.14858	2	16188	16188;16467		41.956	17.935	1	47181000			20054	5212	14426	14533	19667;19668	19667					-0.0813321618406917
HSDQQVFEY	9	Unmodified	_HSDQQVFEY_					0	0	0		ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4	ENSG00000141076|ENST00000314423|UTP4	ENSG00000141076|ENST00000314423|UTP4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	576.751453	1151.48835	-0.15995	-9.2249E-05	-0.92709	-0.0005347	-1.087	-0.00062695	576.751180994302	45.732	1.0598	46.497	46.048	47.108	0.76519	0.0083084	-0.0002358	NaN	41.956	61	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45077000			20055	5212	14426	14533							-0.0813321618406917
HSDTIQWLY	9	Unmodified	_HSDTIQWLY_					0	0	0		FHOD1|p.G581Efs*47|1|0.35|ENSG00000135723|chr16:67233961-67233961|C/-|frameshift_variant;ENSG00000135723|ENST00000258201|FHOD1;ENST00000561922.1_1_16:67270489-67272168:-|nuORF	FHOD1|p.G581Efs*47|1|0.35|ENSG00000135723|chr16:67233961-67233961|C/-|frameshift_variant	FHOD1|p.G581Efs*47|1|0.35|ENSG00000135723|chr16:67233961-67233961|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	582.17919921875	2	581.780013	1161.54547	-0.30609	-0.00017808	-0.21027	-0.00012233	-0.51636	-0.00030041	581.7796376620296	87.23	0.71159	87.23	86.933	87.644	0					29	13	3	0	0	0	0.59614	1	31979	31979		37.974	11.09	1	5701700			20056	4708	14427	14534	19669	19669					-0.028837489077204737
HSDTIQWLY	9	Unmodified	_HSDTIQWLY_					0	0	0		FHOD1|p.G581Efs*47|1|0.35|ENSG00000135723|chr16:67233961-67233961|C/-|frameshift_variant;ENSG00000135723|ENST00000258201|FHOD1;ENST00000561922.1_1_16:67270489-67272168:-|nuORF	FHOD1|p.G581Efs*47|1|0.35|ENSG00000135723|chr16:67233961-67233961|C/-|frameshift_variant	FHOD1|p.G581Efs*47|1|0.35|ENSG00000135723|chr16:67233961-67233961|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	582.1792602539062	2	581.780013	1161.54547	-0.21468	-0.00012489	-0.11261	-6.5513E-05	-0.32728	-0.00019041	581.7799116033077	86.494	0.76653	87.227	86.845	87.612	0.733					34	14	4	0	0	0	0.46121	1	32861	32861		41.84	3.8656	1	6352300			20057	4708	14427	14534	19670	19670					-0.028837489077204737
HSDWTQTRV	9	Unmodified	_HSDWTQTRV_					0	0	0		nc|ENSG00000136883|Q96FN5|KIF12;ENSG00000136883|ENST00000640217|KIF12	nc|ENSG00000136883|Q96FN5|KIF12	nc|ENSG00000136883|Q96FN5|KIF12	MULTI-SECPEP	A375_MHC_IP_R2	2	377.953369140625	3	377.18435	1128.53122	-0.17682	-6.6695E-05	0.05464	2.0609E-05	-0.12218	-4.6086E-05	377.1843668956811	24.697	0.50789	25.341	25.06	25.568	0.64368					16	9	2	0	0	0	0.78753	1	8036	8036		2.4985	0	1	4919300			20058	4837	14428	14535	19671	19671					-0.027904013360284807
HSEAHTLLY	9	Unmodified	_HSEAHTLLY_					0	0	0		ENST00000487617.5_1_2:240002789-240024568:-|nuORF;nc|ENSG00000068024|P56524-2|HDAC4;nc|ENSG00000068024|P56524|HDAC4;ENSG00000068024|ENST00000543185|HDAC4;ENST00000460235.1_1_2:240024358-240029778:-|nuORF;ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;ENST00000463007.5_1_2:240011659-240219867:-|nuORF	ENST00000487617.5_1_2:240002789-240024568:-|nuORF	ENST00000487617.5_1_2:240002789-240024568:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	535.6520385742188	2	535.766906	1069.51926	-0.88223	-0.00047267	-0.62271	-0.00033363	-1.5049	-0.0008063	535.7663391362173	32.181	2.133	32.917	32.605	34.738	0.73692					78	41	4	0	0	0	0.17328	1	11540	11540		39.957	3.9131	1	39357000			20059	1449	14429	14536	19672	19672					-0.012720180791802704
HSEEKPYVC	9	Unmodified	_HSEEKPYVC_					0	0	0		nc|ENSG00000088876|Q6P1L6-2|ZNF343;ENSG00000088876|ENST00000278772|ZNF343;ZNF169|p.G286E|1|0.48|ENSG00000175787|chr9:94300415-94300415|G/A|missense_variant;ZBTB17|p.G498E|1|0.58|ENSG00000116809|chr1:15943682-15943682|C/T|missense_variant	nc|ENSG00000088876|Q6P1L6-2|ZNF343	nc|ENSG00000088876|Q6P1L6-2|ZNF343	MULTI-MSMS	A375_MHC_IP_R2	2	546.1990356445312	2	546.244949	1090.47534	-1.3129	-0.00071716	0.39505	0.00021579	-0.91785	-0.00050137	546.2451573974902	33.817	0.75846	34.57	34.146	34.904	0.75225					38	14	4	0	0	0	0.67332	1	12020	12020		9.3831	0.035688	1	30609000			20060	1901	14430	14537	19673	19673					-0.06627370567821345
HSEFTTLLY	9	Unmodified	_HSEFTTLLY_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-6|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	MULTI-MSMS	A375_MHC_IP_R1	1	556.1767578125	2	555.776939	1109.53933	-0.75562	-0.00041996	0.28125	0.00015631	-0.47437	-0.00026365	555.7770454847588	84.625	0.65948	84.625	84.141	84.8	0					35	12	4	0	0	0	0.03063	1	30944	30944		74.423	44.198	1	15491000			20061	7876	14431	14538	19674	19674					-0.011062671392210177
HSEFTTLLY	9	Unmodified	_HSEFTTLLY_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-6|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	MULTI-SECPEP	A375_MHC_IP_R2	2	555.6861572265625	2	555.776939	1109.53933	-0.72212	-0.00040134	-0.19088	-0.00010609	-0.91301	-0.00050743	555.7767788314392	83.691	0.61443	84.43	84.049	84.663	0.73962					33	11	4	0	0	0	0.07754	1	31880	31880		64.236	41.5	1	14110000			20062	7876	14431	14538	19675	19675					-0.011062671392210177
HSERHVLLY	9	Unmodified	_HSERHVLLY_					0	0	0		nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7;nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7;nc|ENSG00000061273|Q8WUI4-10|HDAC7;ENST00000459625.5_1_12:48184825-48185932:-|nuORF	nc|ENSG00000061273|Q8WUI4-3|HDAC7	nc|ENSG00000061273|Q8WUI4-3|HDAC7	MULTI-SECPEP	A375_MHC_IP_R1	1	385.6089172363281	3	385.208607	1152.60399	-0.20221	-7.7891E-05	0.38296	0.00014752	0.18076	6.9629E-05	385.20882439730207	29.357	0.30382	29.357	29.149	29.453	0					15	5	4	0	0	0	0.34746	1	9169	9169		29.437	15.219	1	7433100			20063	1318	14432	14539	19676	19676					0.033793524574321054
HSERHVLLY	9	Unmodified	_HSERHVLLY_					0	0	0		nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7;nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7;nc|ENSG00000061273|Q8WUI4-10|HDAC7;ENST00000459625.5_1_12:48184825-48185932:-|nuORF	nc|ENSG00000061273|Q8WUI4-3|HDAC7	nc|ENSG00000061273|Q8WUI4-3|HDAC7	MULTI-SECPEP	A375_MHC_IP_R2	2	385.6084899902344	3	385.208607	1152.60399	-0.60882	-0.00023452	3.144	0.0012111	2.5352	0.00097658	385.2087572540673	28.516	0.405	29.196	28.861	29.266	0.68084					24	7	7	0	0	0	0.54812	1	9858	9858		14.218	5.7739	1	10796000			20064	1318	14432	14539	19677	19677					0.033793524574321054
HSEYHTLLY	9	Unmodified	_HSEYHTLLY_					0	0	0		nc|ENSG00000108840|Q9UQL6-3|HDAC5;ENSG00000108840|ENST00000682912|HDAC5	nc|ENSG00000108840|Q9UQL6-3|HDAC5	nc|ENSG00000108840|Q9UQL6-3|HDAC5	MULTI-MSMS	A375_MHC_IP_R1	1	582.1800537109375	2	581.780013	1161.54547	-0.068198	-3.9676E-05	-0.21844	-0.00012708	-0.28664	-0.00016676	581.7799097006358	44.139	2.5387	44.139	43.757	46.295	0					124	49	5	0	0	0	0.0060803	2	15325	15325;15549		164.52	122.42	1	168460000			20065	2843	14433	14540	19678;19679	19678					-0.028837489076977363
HSEYHTLLY	9	Unmodified	_HSEYHTLLY_					0	0	0		nc|ENSG00000108840|Q9UQL6-3|HDAC5;ENSG00000108840|ENST00000682912|HDAC5	nc|ENSG00000108840|Q9UQL6-3|HDAC5	nc|ENSG00000108840|Q9UQL6-3|HDAC5	MULTI-SECPEP	A375_MHC_IP_R2	2	582.17919921875	2	581.780013	1161.54547	-0.22584	-0.00013139	-0.25955	-0.000151	-0.48539	-0.00028239	581.7798509413452	43.276	1.9752	44.048	43.674	45.649	0.7724					93	38	5	0	0	0	0.010462	1	16056	16056		180.01	129.15	1	178610000			20066	2843	14433	14540	19680	19680					-0.028837489076977363
HSFAQLKV	8	Unmodified	_HSFAQLKV_					0	0	0			REV__ENST00000517445.5_1_8:80962678-80964851:-|nuORF	REV__ENST00000517445.5_1_8:80962678-80964851:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	465.66357421875	2	465.263802	928.513051	-0.046638	-2.1699E-05	-0.11424	-5.315E-05	-0.16088	-7.4849E-05	465.2636145238944	35.52	0.40876	35.52	35.319	35.727	0					11	7	2	0	0	0	0.7011	1	11829	11829		34.402	2.0962	1	2820400	+		20067	16675	14434	14541	19681	19681					0.04593508479945285
HSFAQLKV	8	Unmodified	_HSFAQLKV_					0	0	0			REV__ENST00000517445.5_1_8:80962678-80964851:-|nuORF	REV__ENST00000517445.5_1_8:80962678-80964851:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	465.263802	928.513051	-0.84235	-0.00039192	0.36699	0.00017075	-0.47536	-0.00022117	465.2638456719888	34.609	0.55613	35.372	35.171	35.727	0.76338	-0.07388	0.00033926	NaN	34.402	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1861700	+		20068	16675	14434	14541							0.04593508479945285
HSFLYQPDW	9	Unmodified	_HSFLYQPDW_					0	0	0		nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENSG00000079459|ENST00000220584|FDFT1;ENST00000531733.1_1_8:11666026-11667401:+|nuORF	nc|ENSG00000079459|P37268-3|FDFT1	nc|ENSG00000079459|P37268-3|FDFT1	MULTI-MSMS	A375_MHC_IP_R1	1	597.727294921875	2	596.774731	1191.53491	-0.59919	-0.00035758	-0.036973	-2.2064E-05	-0.63617	-0.00037965	596.7747225688026	91.022	1.8734	91.022	90.641	92.515	0					90	36	4	0	0	0	0.02331	1	33471	33471		99.799	72.17	1	65417000			20069	1697	14435	14542	19682	19682					-0.05319731562144625
HSFLYQPDW	9	Unmodified	_HSFLYQPDW_					0	0	0		nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENSG00000079459|ENST00000220584|FDFT1;ENST00000531733.1_1_8:11666026-11667401:+|nuORF	nc|ENSG00000079459|P37268-3|FDFT1	nc|ENSG00000079459|P37268-3|FDFT1	MULTI-MSMS	A375_MHC_IP_R2	2	597.2275390625	2	596.774731	1191.53491	-0.46159	-0.00027547	0.021568	1.2871E-05	-0.44002	-0.0002626	596.7746756478818	90.299	1.7259	91.03	90.648	92.374	0.7318					70	33	3	0	0	0	0.014789	3	34342	34264;34342;34391		111.29	76.885	1	54082000			20070	1697	14435	14542	19683;19684;19685	19684					-0.05319731562144625
HSFLYQPDW	9	Unmodified	_HSFLYQPDW_					0	0	0		nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENSG00000079459|ENST00000220584|FDFT1;ENST00000531733.1_1_8:11666026-11667401:+|nuORF	nc|ENSG00000079459|P37268-3|FDFT1	nc|ENSG00000079459|P37268-3|FDFT1	MULTI-SECPEP	A375_MHC_IP_R2	2	597.4727172851562	2	596.774731	1191.53491	-0.47621	-0.00028419	-1.0018	-0.00059787	-1.478	-0.00088206	596.7744244154421	91.793	0.20412	92.527	92.376	92.581	0.73451					5	3	2	0	0	0	0.59098	1	34874	34874		27.629	16.134	1	958970			20071	1697	14435	14542	19686	19686					-0.05319731562144625
HSFSSATEI	9	Unmodified	_HSFSSATEI_					0	0	0		ENSG00000188107|ENST00000503581|EYS;nc|ENSG00000188107|Q5T1H1|EYS	ENSG00000188107|ENST00000503581|EYS	ENSG00000188107|ENST00000503581|EYS	MULTI-MSMS	A375_MHC_IP_R2	2	490.12945556640625	2	489.729989	977.445425	-1.0082	-0.00049374	0.14143	6.9263E-05	-0.86676	-0.00042448	489.73006887670743	25.712	0.5094	26.372	26.194	26.703	0.65992					17	9	2	0	0	0	0.2264	1	8626	8626		36.044	1.9418	1	6173700			20072	8883	14436	14543	19687	19687					-0.04419986241521201
HSGPFFTF	8	Unmodified	_HSGPFFTF_					0	0	0		ENST00000477917.5_1_2:220146297-220148118:+|nuORF;DNAJB2|p.S131F|1|0.2|ENSG00000135924|chr2:219282876-219282876|C/T|missense_variant;ENST00000472019.5_1_2:220147533-220150716:+|nuORF;ENST00000473750.5_1_2:220147533-220149706:+|nuORF;nc|ENSG00000135924|P25686-2|DNAJB2;ENSG00000135924|ENST00000336576|DNAJB2	ENST00000477917.5_1_2:220146297-220148118:+|nuORF	ENST00000477917.5_1_2:220146297-220148118:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	470.62152099609375	2	470.221603	938.428653	-0.12185	-5.7297E-05	-0.022297	-1.0485E-05	-0.14415	-6.7782E-05	470.2214698303439	92.538	0.81246	92.538	92.211	93.023	0					35	15	3	0	0	0	0.28202	1	33974	33974		60.39	24.345	1	5128700			20073	12449	14437	14544	19688	19688					-0.043024423368024145
HSGPFFTF	8	Unmodified	_HSGPFFTF_					0	0	0		ENST00000477917.5_1_2:220146297-220148118:+|nuORF;DNAJB2|p.S131F|1|0.2|ENSG00000135924|chr2:219282876-219282876|C/T|missense_variant;ENST00000472019.5_1_2:220147533-220150716:+|nuORF;ENST00000473750.5_1_2:220147533-220149706:+|nuORF;nc|ENSG00000135924|P25686-2|DNAJB2;ENSG00000135924|ENST00000336576|DNAJB2	ENST00000477917.5_1_2:220146297-220148118:+|nuORF	ENST00000477917.5_1_2:220146297-220148118:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	470.62115478515625	2	470.221603	938.428653	-0.50965	-0.00023965	0.057766	2.7163E-05	-0.45189	-0.00021249	470.2215659890742	91.668	0.96196	92.402	92.071	93.033	0.7345					36	18	3	0	0	0	0.28202	1	34841	34841		60.39	30.165	1	6478400			20074	12449	14437	14544	19689	19689					-0.043024423368024145
HSGPGLLQLW	10	Unmodified	_HSGPGLLQLW_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2;ENST00000470115.1_1_2:27559063-27560169:-|nuORF;nc|ENSG00000115207|Q8WUA4-2|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	A375_MHC_IP_R1	1	554.7442016601562	2	554.300916	1106.58728	-0.33062	-0.00018327	-0.24261	-0.00013448	-0.57323	-0.00031774	554.3007802191929	111.79	0.91669	111.79	111.36	112.28	0					45	17	4	0	0	0	0.10503	2	40983	40983;41059		62.573	12.64	1	7477600			20075	3280	14438	14545	19690;19691	19690					0.038248515714712994
HSGPGLLQLW	10	Unmodified	_HSGPGLLQLW_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2;ENST00000470115.1_1_2:27559063-27560169:-|nuORF;nc|ENSG00000115207|Q8WUA4-2|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	A375_MHC_IP_R2	2	554.74365234375	2	554.300916	1106.58728	-0.6068	-0.00033635	0.1223	6.7792E-05	-0.4845	-0.00026856	554.300987072771	110.8	0.81487	111.54	111.19	112.01	0.73692					34	15	3	0	0	0	0.10503	2	41799	41740;41799		62.573	17.979	1	6191500			20076	3280	14438	14545	19692;19693	19693					0.038248515714712994
HSGPIHVL	8	Unmodified	_HSGPIHVL_					0	0	0		nc|ENSG00000133740|Q15329-3|E2F5;nc|ENSG00000133740|Q15329-2|E2F5;ENSG00000133740|ENST00000416274|E2F5	nc|ENSG00000133740|Q15329-3|E2F5	nc|ENSG00000133740|Q15329-3|E2F5	MULTI-SECPEP	A375_MHC_IP_R2	2	430.3309326171875	2	430.24287	858.471186	-0.23446	-0.00010087	0.24314	0.00010461	0.0086864	3.7373E-06	430.2426888112753	31.742	0.55719	32.478	32.3	32.857	0.73691					12	10	2	0	0	0	0.92636	1	11269	11269		16.942	0	1	1516500			20077	4529	14439	14546	19694	19694					0.03628952791427764
HSGREMALF	9	Unmodified	_HSGREMALF_					0	0	0			REV__nc|ENSG00000063176|Q9NRA0-4|SPHK2	REV__nc|ENSG00000063176|Q9NRA0-4|SPHK2	MULTI-SECPEP	A375_MHC_IP_R1	1	524.391357421875	2	524.255651	1046.49675	-0.15005	-7.8665E-05	-0.56813	-0.00029784	-0.71818	-0.00037651	524.2553192081753	22.736	0.35113	22.736	22.623	22.974	0					9	6	2	0	0	0	0.76827	1	6104	6104		6.7232	2.3939	1	1136700	+		20078	16465	14440	14547	19695	19695					-0.024639407484755793
HSHFQNIFW	9	Unmodified	_HSHFQNIFW_					0	0	0		ENSG00000170522|ENST00000302274|ELOVL6	ENSG00000170522|ENST00000302274|ELOVL6	ENSG00000170522|ENST00000302274|ELOVL6	MULTI-SECPEP	A375_MHC_IP_R1	1	406.2612609863281	3	405.861319	1214.56213	-0.33915	-0.00013765	-1.7638	-0.00071585	-2.1029	-0.0008535	405.86137460503767	75.266	0.70694	75.266	74.857	75.564	0					25	13	3	0	0	0	0.7713	1	27380	27380		8.4443	6.3603	1	2256500			20079	7517	14441	14548	19696	19696					-0.03657203231114181
HSHFQNIFW	9	Unmodified	_HSHFQNIFW_					0	0	0		ENSG00000170522|ENST00000302274|ELOVL6	ENSG00000170522|ENST00000302274|ELOVL6	ENSG00000170522|ENST00000302274|ELOVL6	MULTI-SECPEP	A375_MHC_IP_R2	2	406.2615051269531	3	405.861319	1214.56213	0.0038386	1.5579E-06	0.063417	2.5738E-05	0.067255	2.7296E-05	405.8613420233089	74.135	0.60958	74.873	74.604	75.214	0.73752					23	11	3	0	0	0	0.69179	1	28154	28154		21.59	10.095	1	2009300			20080	7517	14441	14548	19697	19697					-0.03657203231114181
HSHLRRECRER	11	Unmodified	_HSHLRRECRER_					0	0	0			REV__ENST00000602825.5_1_1:231664421-231690428:+|nuORF	REV__ENST00000602825.5_1_1:231664421-231690428:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	494.3220520019531	3	493.588375	1477.7433	-0.26998	-0.00013326	-0.761	-0.00037562	-1.031	-0.00050888	493.5880060214896	28.591	0.75928	28.591	28.339	29.098	0					44	14	5	0	0	0	0.73016	1	8816	8816		8.7518	2.5174	1	31224000	+		20081	26518	14442	14549	19698	19698					0.023533668031177513
HSHLRRECRER	11	Unmodified	_HSHLRRECRER_					0	0	0			REV__ENST00000602825.5_1_1:231664421-231690428:+|nuORF	REV__ENST00000602825.5_1_1:231664421-231690428:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	493.988037109375	3	493.588375	1477.7433	-0.53212	-0.00026265	-0.8063	-0.00039798	-1.3384	-0.00066063	493.5880511408731	27.847	0.65847	28.525	28.301	28.96	0.67857					36	12	4	0	0	0	0.73016	1	9545	9545		8.7518	0.46535	1	34737000	+		20082	26518	14442	14549	19699	19699					0.023533668031177513
HSHLRRECRER	11	Unmodified	_HSHLRRECRER_					0	0	0			REV__ENST00000602825.5_1_1:231664421-231690428:+|nuORF	REV__ENST00000602825.5_1_1:231664421-231690428:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	493.588375	1477.7433	-0.26998	-0.00013326	-0.761	-0.00037562	-1.031	-0.00050888	493.5880060214896	28.591	0.75928	28.591	28.339	29.098	0	0.032956	3.0875E-05	NaN	8.7518	44	14	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31224000	+		20083	26518	14442	14549							0.023533668031177513
HSHLRRECRER	11	Unmodified	_HSHLRRECRER_					0	0	0			REV__ENST00000602825.5_1_1:231664421-231690428:+|nuORF	REV__ENST00000602825.5_1_1:231664421-231690428:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	493.588375	1477.7433	-0.53212	-0.00026265	-0.8063	-0.00039798	-1.3384	-0.00066063	493.5880511408731	27.847	0.65847	28.525	28.301	28.96	0.67857	-0.032956	-3.6206E-05	NaN	8.7518	36	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34737000	+		20084	26518	14442	14549							0.023533668031177513
HSHPLRPG	8	Unmodified	_HSHPLRPG_					0	0	0			REV__ENST00000379573.6_1_20:3801261-3802808:+|nuORF	REV__ENST00000379573.6_1_20:3801261-3802808:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	450.9468078613281	2	450.743568	899.472583	-0.34571	-0.00015583	-0.39143	-0.00017643	-0.73714	-0.00033226	450.7452188137872	19.293	0.14727	19.293	19.221	19.368	0					5	4	2	0	0	0	0.972	1	4669	4669		2.3027	0	1	1776000	+		20085	24201	14443	14550	19700	19700					0.018825868801741308
HSHVAVAW	8	Unmodified	_HSHVAVAW_					0	0	0		MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant;ENSG00000105429|ENST00000251268|MEGF8;nc|ENSG00000105429|Q7Z7M0-2|MEGF8	MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant	MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	454.1324157714844	2	453.732669	905.450785	-0.37501	-0.00017016	-0.050965	-2.3124E-05	-0.42598	-0.00019328	453.7325875582597	32.98	0.40507	32.98	32.734	33.14	0					12	7	2	0	0	0	0.8824	1	10762	10762		30.225	10.786	1	2060700			20086	2606	14444	14551	19701	19701					-0.005722178683981838
HSHVAVAW	8	Unmodified	_HSHVAVAW_					0	0	0		MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant;ENSG00000105429|ENST00000251268|MEGF8;nc|ENSG00000105429|Q7Z7M0-2|MEGF8	MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant	MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	454.132568359375	2	453.732669	905.450785	-0.24512	-0.00011122	0.30648	0.00013906	0.061364	2.7843E-05	453.73260198267843	32.103	0.35589	32.84	32.654	33.01	0.73691					9	6	2	0	0	0	0.73563	1	11409	11409		36.044	20.197	1	2356000			20087	2606	14444	14551	19702	19702					-0.005722178683981838
HSIESSNDW	9	Unmodified	_HSIESSNDW_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;EXT2|p.D431Afs*5|1|0.05|ENSG00000151348|chr11:44171729-44171729|A/-|frameshift_variant	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	A375_MHC_IP_R2	2	538.127685546875	2	537.727978	1073.4414	-0.91043	-0.00048956	0.16273	8.7503E-05	-0.7477	-0.00040206	537.727979434715	32.519	0.45765	33.256	33.01	33.468	0.73691					14	8	2	0	0	0	0.047602	1	11613	11613		65.235	44.781	1	2794100			20088	5898	14445	14552	19703	19703					-0.09238075735243001
HSIEVFTHY	9	Unmodified	_HSIEVFTHY_					0	0	0		ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	MULTI-MSMS	A375_MHC_IP_R1	1	567.1746215820312	2	566.774731	1131.53491	-0.41861	-0.00023726	0.28325	0.00016054	-0.13535	-7.6714E-05	566.774500868893	47.245	0.61562	47.245	46.901	47.517	0					24	11	3	0	0	0	0.062639	1	16652	16652		74.929	42.624	1	8974000			20089	4962	14446	14553	19704	19704					-0.025597315621325833
HSIEVFTHY	9	Unmodified	_HSIEVFTHY_					0	0	0		ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	MULTI-SECPEP	A375_MHC_IP_R2	2	567.1741943359375	2	566.774731	1131.53491	-0.26754	-0.00015163	0.74943	0.00042476	0.4819	0.00027313	566.7745224185627	46.364	0.55956	47.129	46.957	47.517	0.76519					27	10	4	0	0	0	0.0575	1	17371	17371		96.285	38.813	1	7140500			20090	4962	14446	14553	19705	19705					-0.025597315621325833
HSISPQMW	8	Unmodified	_HSISPQMW_					0	0	0		ENSG00000133704|ENST00000256079|IPO8;nc|ENSG00000133704|O15397-2|IPO8	ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	MULTI-MSMS	A375_MHC_IP_R1	1	493.6313781738281	2	493.231645	984.448736	-0.35896	-0.00017705	0.16518	8.147E-05	-0.19379	-9.5581E-05	493.23181047468717	57.765	0.86109	57.765	57.518	58.379	0					23	16	2	0	0	0	0.23604	1	20741	20741		64.236	34.012	1	1805000			20091	4524	14447	14554	19706	19706					-0.04411014668505686
HSISPQMW	8	Unmodified	_HSISPQMW_					0	0	0		ENSG00000133704|ENST00000256079|IPO8;nc|ENSG00000133704|O15397-2|IPO8	ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	MULTI-MSMS	A375_MHC_IP_R2	2	493.63140869140625	2	493.231645	984.448736	-0.92965	-0.00045853	0.073557	3.6281E-05	-0.85609	-0.00042225	493.23160433644387	56.903	0.66238	57.653	57.459	58.121	0.75015					30	12	3	0	0	0	0.16592	1	21520	21520		77.984	47.76	1	2396800			20092	4524	14447	14554	19707	19707					-0.04411014668505686
HSITQAGVQW	10	Unmodified	_HSITQAGVQW_					0	0	0		ENST00000576713.6_1_17:79534551-79539120:-|nuORF	ENST00000576713.6_1_17:79534551-79539120:-|nuORF	ENST00000576713.6_1_17:79534551-79539120:-|nuORF	MSMS	A375_MHC_IP_R1	1	563.7001953125	2	563.78563	1125.55671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.118	1	54.118	53.618	54.618	0								0	0	0	0.14686	1	19310	19310		23.79	4.5328	1				20093	13640	14448	14555	19708	19708					-0.0010492681358300615
HSKELLPKD	9	Unmodified	_HSKELLPKD_					0	0	0			REV__CON__P02769	REV__CON__P02769	MULTI-SECPEP	A375_MHC_IP_R1	1	355.9535217285156	3	356.201229	1065.58186	0.22259	7.9289E-05	-0.45866	-0.00016338	-0.23607	-8.4088E-05	356.20095610055535	35.739	0.51078	35.739	35.522	36.033	0					17	9	3	0	0	0	0.59614	1	11871	11871		22.658	11.859	1	2377800	+	+	20094	15856	14449	14556	19709	19709					0.051691279890064834
HSKLDNQFV	9	Unmodified	_HSKLDNQFV_					0	0	0			REV__ENST00000371113.8_3_X:128724255-128724522:+|nuORF	REV__ENST00000371113.8_3_X:128724255-128724522:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	363.2854309082031	3	363.189212	1086.54581	0.36766	0.00013353	3.9585	0.0014377	4.3262	0.0015712	363.19015799571946	37.462	0.45993	37.462	37.198	37.658	0					17	8	3	0	0	0	0.67483	1	12646	12646		10.151	2.2052	1	1320000	+		20095	24040	14450	14557	19710	19710					0.005996708121301708
HSKMCDSHY	9	Unmodified	_HSKMCDSHY_					0	0	0		ENSG00000013441|ENST00000321356|CLK1;nc|ENSG00000013441|P49759-3|CLK1;nc|ENSG00000013441|P49759-2|CLK1;ENST00000473565.5_1_2:201725957-201729352:-|nuORF;ENST00000481641.1_1_2:201725957-201728949:-|nuORF	ENSG00000013441|ENST00000321356|CLK1	ENSG00000013441|ENST00000321356|CLK1	MULTI-MSMS	A375_MHC_IP_R2	2	554.6567993164062	2	554.220951	1106.42735	-1.001	-0.00055476	-0.40358	-0.00022367	-1.4046	-0.00077843	554.2209383919175	40.941	1.0672	41.716	41.386	42.453	0.77451					42	20	4	0	0	0	0.70307	1	15434	15434		6.7232	0.99131	1	13309000			20096	1022	14451	14558	19711	19711					-0.12160767759519331
HSKTSFSW	8	Unmodified	_HSKTSFSW_					0	0	0		nc|ENSG00000158352|Q9ULL8-2|SHROOM4;ENSG00000158352|ENST00000376020|SHROOM4	nc|ENSG00000158352|Q9ULL8-2|SHROOM4	nc|ENSG00000158352|Q9ULL8-2|SHROOM4	MULTI-SECPEP	A375_MHC_IP_R2	2	490.6348876953125	2	490.235242	978.45593	-0.61789	-0.00030291	0.31631	0.00015507	-0.30158	-0.00014784	490.23536630384723	32.828	0.40717	33.565	33.417	33.825	0.73692					11	7	2	0	0	0	0.90057	1	11743	11743		29.082	5.061	1	2338200			20097	6302	14452	14559	19712	19712					-0.03415958796426821
HSLAPLSSF	9	Unmodified	_HSLAPLSSF_					0	0	0			REV__ENST00000419296.1_1_2:110752028-110752415:+|nuORF	REV__ENST00000419296.1_1_2:110752028-110752415:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	480.1529846191406	2	479.753267	957.491981	-0.4249	-0.00020385	0.23305	0.00011181	-0.19185	-9.2041E-05	479.7534054373095	60.286	0.40677	60.286	60.057	60.464	0					13	7	2	0	0	0	0.28475	1	21715	21715		39.957	0.0076237	1	2210200	+		20098	24565	14453	14560	19713	19713					0.011534983804381227
HSLDLYELD	9	Unmodified	_HSLDLYELD_					0	0	0			REV__nc|ENSG00000174130|Q9Y2C9-2|TLR6	REV__nc|ENSG00000174130|Q9Y2C9-2|TLR6	MSMS	A375_MHC_IP_R2	2	552.695556640625	2	552.764029	1103.5135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.629	1	46.394	45.894	46.894	0.76519								0	0	0	0.15142	1	17062	17062		19.257	2.3147	1		+		20099	21265	14454	14561	19714	19714					-0.03411161381518468
HSLILKERRII	11	Unmodified	_HSLILKERRII_					0	0	0			REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B	REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B	MULTI-SECPEP	A375_MHC_IP_R2	2	460.695068359375	3	459.961144	1376.8616	-0.21839	-0.00010045	1.1925	0.00054848	0.97407	0.00044804	460.29517605511876	149.92	0.55389	149.94	149.46	150.01	0.018265					61	38	2	0	0	0	1.0014	1	58164	58164		0.45452	0.35968	1	272930	+		20100	19991	14455	14562	19715	19715					0.18824669330615507
HSLKESGQLW	10	Unmodified	_HSLKESGQLW_					0	0	0		ENSG00000149485|ENST00000350997|FADS1;nc|ENSG00000149485|O60427|FADS1;nc|ENSG00000149485|O60427-2|FADS1	ENSG00000149485|ENST00000350997|FADS1	ENSG00000149485|ENST00000350997|FADS1	MULTI-SECPEP	A375_MHC_IP_R1	1	593.20654296875	2	592.806562	1183.59857	-0.25469	-0.00015098	0.13969	8.2807E-05	-0.115	-6.8172E-05	592.8065737127332	40.578	0.71252	40.578	40.05	40.762	0					28	13	3	0	0	0	0.84651	1	13820	13820		35.612	35.612	1	7565300			20101	5808	14456	14563	19716	19716					0.01411628874939197
HSLKFNRERI	10	Unmodified	_HSLKFNRERI_					0	0	0		STXBP5L|p.I824*|1|0.32|ENSG00000145087|chr3:121381342-121381343|TA/-|frameshift_variant;STXBP5L|p.A1171Ffs*5|1|0.07|ENSG00000145087|chr3:121418548-121418549|-/TTTGTCA|frameshift_variant;ENSG00000145087|ENST00000471454|STXBP5L;nc|ENSG00000145087|Q9Y2K9|STXBP5L	STXBP5L|p.I824*|1|0.32|ENSG00000145087|chr3:121381342-121381343|TA/-|frameshift_variant	STXBP5L|p.I824*|1|0.32|ENSG00000145087|chr3:121381342-121381343|TA/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	650.1397705078125	2	650.367653	1298.72075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.32	1	127.58	127.08	128.08	0.26593								0	0	0	0.15541	1	49907	49907		3.2813	0	1				20102	5537	14457	14564	19717	19717					0.08334090677180939
HSLPAVRQY	9	Unmodified	_HSLPAVRQY_					0	0	0		nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-2|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENSG00000163636|ENST00000295901|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6;ENST00000497315.5_1_3:64004227-64005057:-|nuORF	nc|ENSG00000163636|Q15008-3|PSMD6	nc|ENSG00000163636|Q15008-3|PSMD6	MULTI-SECPEP	A375_MHC_IP_R1	1	357.929443359375	3	357.529569	1069.56688	-0.17644	-6.3083E-05	-2.1533	-0.00076985	-2.3297	-0.00083294	357.5294863667522	27.002	0.65438	27.002	26.575	27.229	0					28	12	3	0	0	0	0.096726	1	8136	8136		40.239	26.624	1	12138000			20103	6699	14458	14565	19718	19718					0.03487680911666757
HSLPAVRQY	9	Unmodified	_HSLPAVRQY_					0	0	0		nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-2|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENSG00000163636|ENST00000295901|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6;ENST00000497315.5_1_3:64004227-64005057:-|nuORF	nc|ENSG00000163636|Q15008-3|PSMD6	nc|ENSG00000163636|Q15008-3|PSMD6	MULTI-SECPEP	A375_MHC_IP_R1	1	536.190185546875	2	535.790715	1069.56688	-0.91663	-0.00049112	0.11294	6.0514E-05	-0.80368	-0.00043061	535.790787887581	27.002	0.70436	27.002	26.677	27.381	0					32	13	4	0	0	0	0.008833	1	8089	8089		160.52	104.34	1	49591000			20104	6699	14458	14565	19719	19719					0.03487680911666757
HSLPAVRQY	9	Unmodified	_HSLPAVRQY_					0	0	0		nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-2|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENSG00000163636|ENST00000295901|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6;ENST00000497315.5_1_3:64004227-64005057:-|nuORF	nc|ENSG00000163636|Q15008-3|PSMD6	nc|ENSG00000163636|Q15008-3|PSMD6	MULTI-MSMS	A375_MHC_IP_R2	2	357.5612487792969	3	357.529569	1069.56688	-0.60546	-0.00021647	-1.8223	-0.00065154	-2.4278	-0.00086801	357.5296174296524	26.255	0.65984	26.915	26.703	27.363	0.65992					21	12	2	0	0	0	0.3489	1	8960	8960		27.223	18.779	1	5259000			20105	6699	14458	14565	19720	19720					0.03487680911666757
HSLPAVRQY	9	Unmodified	_HSLPAVRQY_					0	0	0		nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-2|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENSG00000163636|ENST00000295901|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6;ENST00000497315.5_1_3:64004227-64005057:-|nuORF	nc|ENSG00000163636|Q15008-3|PSMD6	nc|ENSG00000163636|Q15008-3|PSMD6	MULTI-SECPEP	A375_MHC_IP_R2	2	536.18994140625	2	535.790715	1069.56688	-1.239	-0.00066385	0.2513	0.00013464	-0.98771	-0.00052921	535.7908253350755	26.368	0.76339	27.028	26.754	27.517	0.65992					32	14	4	0	0	0	0.011145	1	8868	8868		131.27	72.589	1	38407000			20106	6699	14458	14565	19721	19721					0.03487680911666757
HSLQKRAIKA	10	Unmodified	_HSLQKRAIKA_					0	0	0			REV__ENST00000559109.2_1_15:31745531-31745762:-|nuORF	REV__ENST00000559109.2_1_15:31745531-31745762:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	385.2585754394531	3	384.571768	1150.69348	0.17258	6.637E-05	-0.042309	-1.6271E-05	0.13027	5.01E-05	384.5718400442515	19.597	0.66159	19.597	19.318	19.98	0					28	12	3	0	0	0	0.70972	2	4835	4835;4913		7.9454	2.162	1	6672000	+		20107	26146	14459	14566	19722;19723	19722					0.1241560713679064
HSLSTFHW	8	Unmodified	_HSLSTFHW_					0	0	0		ENST00000479481.5_1_10:99116853-99131081:-|nuORF	ENST00000479481.5_1_10:99116853-99131081:-|nuORF	ENST00000479481.5_1_10:99116853-99131081:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	507.6490478515625	2	507.743234	1013.47191	-0.7881	-0.00040015	1.5483	0.00078615	0.76023	0.000386	507.74374676226745	67.065	0.30334	67.801	67.597	67.9	0.73631					9	5	2	0	0	0	0.93416	1	25353	25353		14.582	5.2343	1	886200			20108	12475	14460	14567	19724	19724					-0.03428252559535849
HSLVALFTCI	10	Unmodified	_HSLVALFTCI_					0	0	0			REV__ENSG00000059588|ENST00000040877|TARBP1	REV__ENSG00000059588|ENST00000040877|TARBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	552.6953735351562	2	552.299527	1102.5845	-0.60326	-0.00033318	-4.1656	-0.0023007	-4.7689	-0.0026339	552.2957861936205	46.491	0.45348	46.491	46.245	46.699	0					30	8	5	0	0	0	0.56504	1	16304	16304		34.402	2.0962	1	6365400	+		20109	16441	14461	14568	19725	19725					0.03731260122299318
HSNGTVSLW	9	Unmodified	_HSNGTVSLW_					0	0	0		ENST00000489905.1_1_6:33248421-33255161:-|nuORF;WDR46|p.H402Lfs*101|1|0.3|ENSG00000227057|chr6:33280898-33280898|T/-|frameshift_variant;ENSG00000227057|ENST00000374617|WDR46	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	501.095703125	2	500.745973	999.477394	-0.35136	-0.00017594	-0.11662	-5.8399E-05	-0.46798	-0.00023434	500.7459074108325	59.698	0.91479	59.698	59.295	60.21	0					54	17	4	0	0	0	0.14606	1	21480	21480		63.961	14.028	1	12929000			20110	9707	14462	14569	19726	19726					-0.0223657376770916
HSNGTVSLW	9	Unmodified	_HSNGTVSLW_					0	0	0		ENST00000489905.1_1_6:33248421-33255161:-|nuORF;WDR46|p.H402Lfs*101|1|0.3|ENSG00000227057|chr6:33280898-33280898|T/-|frameshift_variant;ENSG00000227057|ENST00000374617|WDR46	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	501.1452331542969	2	500.745973	999.477394	-0.94191	-0.00047166	-0.20751	-0.00010391	-1.1494	-0.00057557	500.74585236638825	58.753	0.96426	59.5	59.134	60.098	0.74714					44	18	3	0	0	0	0.050868	1	22173	22173		63.961	20.102	1	12904000			20111	9707	14462	14569	19727	19727					-0.0223657376770916
HSNKPALW	8	Unmodified	_HSNKPALW_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000583408.5_1_17:30207568-30228646:-|nuORF;ENST00000490218.6_1_17:30212004-30222015:-|nuORF;ENST00000560291.2_1_15:52152484-52153489:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-SECPEP	A375_MHC_IP_R1	1	477.1532897949219	2	476.753601	951.49265	-0.59195	-0.00028222	0.22803	0.00010871	-0.36392	-0.0001735	476.75362924684975	31.253	0.55617	31.253	31.009	31.565	0					18	10	2	0	0	0	0.20774	1	9989	9989		71.922	43.435	1	4700000			20112	2825	14463	14570	19728	19728					0.014963378201287014
HSNKPALW	8	Unmodified	_HSNKPALW_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000583408.5_1_17:30207568-30228646:-|nuORF;ENST00000490218.6_1_17:30212004-30222015:-|nuORF;ENST00000560291.2_1_15:52152484-52153489:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-SECPEP	A375_MHC_IP_R2	2	477.15350341796875	2	476.753601	951.49265	-0.57531	-0.00027428	0.049069	2.3394E-05	-0.52624	-0.00025089	476.75355173647256	30.284	0.65839	31.002	30.759	31.417	0.71857					16	12	2	0	0	0	0.24136	1	10642	10642		57.722	40.635	1	3400200			20113	2825	14463	14570	19729	19729					0.014963378201287014
HSNPGDYAW	9	Unmodified	_HSNPGDYAW_					0	0	0		ENSG00000265491|ENST00000582693|RNF115	ENSG00000265491|ENST00000582693|RNF115	ENSG00000265491|ENST00000582693|RNF115	MULTI-MSMS	A375_MHC_IP_R2	2	524.1193237304688	2	523.719956	1045.42536	-0.483	-0.00025296	-0.043789	-2.2933E-05	-0.52679	-0.00027589	523.7197627925665	42.145	0.40891	42.918	42.707	43.116	0.7724					12	7	2	0	0	0	0.2487	1	15705	15705		34.402	2.2848	1	2241800			20114	9959	14464	14571	19730	19730					-0.09553737181477118
HSPNLPLGY	9	Unmodified	_HSPNLPLGY_					0	0	0			REV__ENST00000382303.5_1_9:711004-711088:+|nuORF	REV__ENST00000382303.5_1_9:711004-711088:+|nuORF	MSMS	A375_MHC_IP_R1	1	499.1553649902344	2	499.258717	996.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.358	1	92.358	91.858	92.858	0								0	0	0	0.15486	1	33942	33942		11.64	1.4569	1		+		20115	24245	14465	14572	19731	19731					0.004489007547249457
HSPTMAYLL	9	Unmodified	_HSPTMAYLL_					0	0	0		ENSG00000112893|ENST00000261483|MAN2A1	ENSG00000112893|ENST00000261483|MAN2A1	ENSG00000112893|ENST00000261483|MAN2A1	MSMS	A375_MHC_IP_R1	1	516.6629638671875	2	516.762778	1031.511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.895	1	54.895	54.395	55.395	0								0	0	0	0.15486	1	19619	19619		9.3474	0.60203	1				20116	3117	14466	14573	19732	19732					-0.003492883201715813
HSPWFPWRQLS	11	Unmodified	_HSPWFPWRQLS_					0	0	0			REV__ENST00000568121.1_1_16:34213335-34213557:-|nuORF	REV__ENST00000568121.1_1_16:34213335-34213557:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	481.677001953125	3	480.910561	1439.70985	-0.85454	-0.00041096	-1.3512	-0.00064982	-2.2058	-0.0010608	481.24464265799173	49.717	0.4565	50.471	50.142	50.599	0.75406					11	8	2	0	0	0	0.99732	1	18561	18561		4.1166	1.6818	1	2323500	+		20117	26258	14467	14574	19733	19733					0.007586883028807279
HSQFEFKMP	9	Unmodified	_HSQFEFKMP_					0	0	0			REV__nc|ENSG00000196935|Q7Z6B7-2|SRGAP1	REV__nc|ENSG00000196935|Q7Z6B7-2|SRGAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	384.6182556152344	3	384.183181	1149.52771	0.43993	0.00016901	-0.31471	-0.00012091	0.12522	4.8109E-05	384.18304957083757	20.647	0.51118	20.647	20.435	20.946	0					11	9	2	0	0	0	0.80332	1	5403	5403		2.4985	1.8717	1	670440	+		20118	22240	14468	14575	19734	19734					-0.041067874342161304
HSQICPGFVIQ	11	Unmodified	_HSQICPGFVIQ_					0	0	0		ENSG00000161551|ENST00000638348|ZNF577	ENSG00000161551|ENST00000638348|ZNF577	ENSG00000161551|ENST00000638348|ZNF577	MULTI-SECPEP	A375_MHC_IP_R2	2	410.93524169921875	3	410.209619	1227.60703	-0.33506	-0.00013744	-1.3021	-0.00053413	-1.6371	-0.00067157	410.5435309582331	22.865	0.51028	23.495	23.164	23.675	0.63014					11	9	2	0	0	0	0.99411	1	7183	7183		6.6235	0	1	3715200			20119	6478	14469	14576	19735	19735					0.00232859519928752
HSRCIIDRL	9	Unmodified	_HSRCIIDRL_					0	0	0			REV__nc|ENSG00000184178|Q8WU76-2|SCFD2	REV__nc|ENSG00000184178|Q8WU76-2|SCFD2	MULTI-MSMS	A375_MHC_IP_R1	1	371.8675231933594	3	371.537959	1111.59205	0.40921	0.00015204	-0.1703	-6.3273E-05	0.2389	8.8762E-05	371.8723747628693	53.601	0.91242	53.601	53.301	54.213	0					25	17	2	0	0	0	0.75878	1	19038	19038		1.7423	0.96574	1	1499600	+		20120	21800	14470	14577	19736	19736					0.040714124425676346
HSREIRELF	9	Unmodified	_HSREIRELF_					0	0	0		ENSG00000122965|ENST00000261741|RBM19	ENSG00000122965|ENST00000261741|RBM19	ENSG00000122965|ENST00000261741|RBM19	MULTI-MSMS	A375_MHC_IP_R2	2	396.6156005859375	3	396.215761	1185.62546	-0.33221	-0.00013163	0.95238	0.00037735	0.62017	0.00024572	396.21596843586946	35.582	0.45616	36.346	36.081	36.537	0.76338					24	8	4	0	0	0	0.55601	1	12933	12933		17.049	0.4827	1	2623800			20121	3817	14471	14578	19737	19737					0.04006737486133716
HSREIRELF	9	Unmodified	_HSREIRELF_					0	0	0		ENSG00000122965|ENST00000261741|RBM19	ENSG00000122965|ENST00000261741|RBM19	ENSG00000122965|ENST00000261741|RBM19	MULTI-MATCH	A375_MHC_IP_R1	1		3	396.215761	1185.62546	-0.36832	-0.00014593	0.10792	4.2761E-05	-0.2604	-0.00010317	396.5500713157425	36.74	0.30438	36.74	36.541	36.845	0	0.19719	-0.00039356	NaN	17.049	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2136400			20122	3817	14471	14578							0.04006737486133716
HSSEELRNLGW	11	Unmodified	_HSSEELRNLGW_					0	0	0		ENSG00000181555|ENST00000409792|SETD2;nc|ENSG00000181555|Q9BYW2-2|SETD2;nc|ENSG00000181555|Q9BYW2-3|SETD2	ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	MULTI-SECPEP	A375_MHC_IP_R1	1	664.509033203125	2	664.323108	1326.63166	-0.68846	-0.00045736	0.14568	9.6782E-05	-0.54278	-0.00036058	664.3231217917194	52.743	0.40541	52.743	52.541	52.946	0					17	7	3	0	0	0	0.75869	1	18767	18767		25.997	19.274	1	1608800			20123	8351	14472	14579	19738	19738					-0.018587890730032086
HSSEELRNLGW	11	Unmodified	_HSSEELRNLGW_					0	0	0		ENSG00000181555|ENST00000409792|SETD2;nc|ENSG00000181555|Q9BYW2-2|SETD2;nc|ENSG00000181555|Q9BYW2-3|SETD2	ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	MULTI-SECPEP	A375_MHC_IP_R2	2	664.5089111328125	2	664.323108	1326.63166	-1.1768	-0.00078175	0.35531	0.00023604	-0.82145	-0.00054571	664.3233129770546	52.001	0.35782	52.754	52.574	52.932	0.75225					10	6	2	0	0	0	0.93746	1	19588	19588		22.775	21.445	1	2373200			20124	8351	14472	14579	19739	19739					-0.018587890730032086
HSSGDISV	8	Unmodified	_HSSGDISV_					0	0	0		ENSG00000151320|ENST00000280979|AKAP6	ENSG00000151320|ENST00000280979|AKAP6	ENSG00000151320|ENST00000280979|AKAP6	MSMS	A375_MHC_IP_R2	2	401.16571044921875	2	401.1905	800.366446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.151	1	65.889	65.389	66.389	0.73811								0	0	0	0.16876	1	24702	24702		9.3474	0	1				20125	5894	14473	14580	19740	19740					-0.04172213475794706
HSSKLIDRVY	10	Unmodified	_HSSKLIDRVY_					0	0	0		ENSG00000129204|ENST00000574788|USP6;nc|ENSG00000129204|P35125-3|USP6;ENST00000357482.5_1_17:5035679-5037292:+|nuORF	ENSG00000129204|ENST00000574788|USP6	ENSG00000129204|ENST00000574788|USP6	MULTI-MSMS	A375_MHC_IP_R2	2	609.7350463867188	2	609.335487	1216.65642	-0.34206	-0.00020843	-0.48101	-0.0002931	-0.82307	-0.00050153	609.3348764331109	47.867	0.70604	48.628	48.378	49.084	0.76127					26	13	3	0	0	0	0.70179	1	17950	17950		11.495	1.3441	1	6218500			20126	4181	14474	14581	19741	19741					0.0567589080039852
HSSNPNLSTL	10	Unmodified	_HSSNPNLSTL_					0	0	0		nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;OSBPL3|p.D312N|1|0.29|ENSG00000070882|chr7:24861706-24861706|C/T|missense_variant	nc|ENSG00000070882|Q9H4L5-8|OSBPL3	nc|ENSG00000070882|Q9H4L5-8|OSBPL3	MULTI-MSMS	A375_MHC_IP_R2	2	535.666748046875	2	535.26727	1068.51999	-0.74666	-0.00039966	-0.30334	-0.00016237	-1.05	-0.00056203	535.2670344502968	46.12	1.5189	46.885	46.048	47.567	0.76518					55	29	2	0	0	0	0.44858	2	17172	17172;17430		31.268	0.86571	1	4527600			20127	1502	14475	14582	19742;19743	19742					-0.01153223430151229
HSSSEEDSSDN	11	Unmodified	_HSSSEEDSSDN_					0	0	0			REV__ENSG00000069345|ENST00000317089|DNAJA2	REV__ENSG00000069345|ENST00000317089|DNAJA2	MSMS	A375_MHC_IP_R1	1	597.1746826171875	2	597.213086	1192.41162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.376	1	91.376	90.876	91.876	0								0	0	0	0.16302	1	33574	33574		2.9952	0.10602	1		+		20128	16557	14476	14583	19744	19744					-0.17689104261853572
HSSVRVRIRL	10	Unmodified	_HSSVRVRIRL_					0	0	0		ENSG00000269190|ENST00000292852|FBXO17;ENST00000599418.1_1_19:39433250-39435758:-|nuORF;ENST00000597696.5_1_19:39433250-39437239:-|nuORF	ENSG00000269190|ENST00000292852|FBXO17	ENSG00000269190|ENST00000292852|FBXO17	MULTI-MSMS	A375_MHC_IP_R2	2	612.2778930664062	2	611.878188	1221.74182	-0.33327	-0.00020392	0.23504	0.00014381	-0.098232	-6.0106E-05	611.8780837689309	149.45	1.6899	149.47	148.32	150.01	0.018265					197	62	4	0	0	0	0.72658	1	58171	58171		0.40072	0.050084	1	904490			20129	9979	14477	14584	19745	19745					0.13982100776684092
HSTIHLLKL	9	Unmodified	_HSTIHLLKL_					0	0	0		ENST00000524817.5_1_11:9685687-9762009:+|nuORF;ENSG00000133789|ENST00000318950|SWAP70;ENST00000534562.1_1_11:9749605-9771962:+|nuORF	ENST00000524817.5_1_11:9685687-9762009:+|nuORF	ENST00000524817.5_1_11:9685687-9762009:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	353.9496154785156	3	354.553715	1060.63931	-0.035314	-1.2521E-05	3.925	0.0013916	3.8897	0.0013791	354.8901092484545	55.343	0.35553	55.343	55.075	55.431	0					9	6	2	0	0	0	0.75466	1	19783	19783		2.4985	0.21571	1	1775600			20130	4530	14478	14585	19746	19746					0.1114201498521652
HSTRRRLRRGF	11	Unmodified	_HSTRRRLRRGF_					0	0	0			REV__nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	REV__nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	MULTI-MSMS	A375_MHC_IP_R1	1	481.6831359863281	3	481.283503	1440.82868	-0.64097	-0.00030849	0.33968	0.00016348	-0.30129	-0.000145	481.28362349651695	133.48	5.0027	133.48	133.1	138.1	0					347	97	6	0	0	0	0.73809	2	52582	52582;52820		0.40827	0.31342	1	602190000	+		20131	16228	14479	14586	19747;19748	19747					0.12589900051079894
HSTRRRLRRGF	11	Unmodified	_HSTRRRLRRGF_					0	0	0			REV__nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	REV__nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	MULTI-MSMS	A375_MHC_IP_R2	2	482.017578125	3	481.283503	1440.82868	-0.4903	-0.00023597	0.26318	0.00012667	-0.22711	-0.00010931	481.2835827603349	133.41	4.9979	133.58	133.04	138.04	0.16487					300	97	6	0	0	0	0.73809	1	53400	53400		0.40827	0.31342	1	596420000	+		20132	16228	14479	14586	19749	19749					0.12589900051079894
HSTVHLIEF	9	Unmodified	_HSTVHLIEF_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-SECPEP	A375_MHC_IP_R1	1	541.163818359375	2	541.785099	1081.55564	-0.64551	-0.00034973	2.3816	0.0012903	1.7361	0.00094057	542.2883488941164	61.089	0.81521	61.089	60.77	61.585	0					39	15	3	0	0	0	0.083712	1	22041	22041		65.235	49.388	1	19866000			20133	5711	14480	14587	19750	19750					0.01812858817538654
HSTVHLIEF	9	Unmodified	_HSTVHLIEF_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-SECPEP	A375_MHC_IP_R2	2	541.6734008789062	2	541.785099	1081.55564	-1.1645	-0.00063091	2.4217	0.001312	1.2572	0.00068114	541.7852192913742	60.137	1.0159	60.884	60.45	61.466	0.74714					46	19	3	0	0	0	0.053904	1	22764	22764		74.929	17.458	1	16042000			20134	5711	14480	14587	19751	19751					0.01812858817538654
HSTVIGKVW	9	Unmodified	_HSTVIGKVW_					0	0	0		ENSG00000121743|ENST00000241125|GJA3	ENSG00000121743|ENST00000241125|GJA3	ENSG00000121743|ENST00000241125|GJA3	MULTI-SECPEP	A375_MHC_IP_R1	1	514.1901245117188	2	513.790184	1025.56581	-0.23633	-0.00012143	-0.25464	-0.00013083	-0.49097	-0.00025226	513.7900969046167	44.379	0.41013	44.379	44.165	44.575	0					12	7	2	0	0	0	0.34746	1	15521	15521		45.7	30.861	1	1765700			20135	3733	14481	14588	19752	19752					0.0540546654276568
HSTVIGKVW	9	Unmodified	_HSTVIGKVW_					0	0	0		ENSG00000121743|ENST00000241125|GJA3	ENSG00000121743|ENST00000241125|GJA3	ENSG00000121743|ENST00000241125|GJA3	MULTI-SECPEP	A375_MHC_IP_R2	2	514.1897583007812	2	513.790184	1025.56581	-0.61352	-0.00031522	-0.16671	-8.5652E-05	-0.78022	-0.00040087	513.7902492339314	43.389	0.35572	44.161	43.977	44.333	0.7724					13	6	3	0	0	0	0.14606	1	16198	16198		63.961	29.559	1	1734500			20136	3733	14481	14588	19753	19753					0.0540546654276568
HSVDLKESLLM	11	Unmodified	_HSVDLKESLLM_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MSMS	A375_MHC_IP_R1	1	424.60198974609375	3	424.560317	1270.65912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.329	1	24.329	23.829	24.829	0								0	0	0	0.16166	1	6882	6882		5.0475	0	1		+		20137	19741	14482	14589	19754	19754					0.03461978143036504
HSVLEENYQ	9	Unmodified	_HSVLEENYQ_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	A375_MHC_IP_R2	2	560.158203125	2	559.759278	1117.504	-0.98362	-0.00055059	0.079549	4.4528E-05	-0.90407	-0.00050606	559.75915208972	20.048	0.76023	20.658	20.197	20.958	0.61029					19	14	2	0	0	0	0.64808	1	6166	6166		11.64	1.5664	1	977340			20138	6242	14483	14590	19755	19755					-0.05004929667052238
HSVPLWVSHAS	11	Unmodified	_HSVPLWVSHAS_					0	0	0			REV__ENST00000547860.1_3_12:96606536-96607565:+|nuORF	REV__ENST00000547860.1_3_12:96606536-96607565:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	406.9432678222656	3	407.212128	1218.61456	-0.23312	-9.493E-05	0.19307	7.8622E-05	-0.040048	-1.6308E-05	407.21220416397585	23.933	0.20523	24.563	24.435	24.64	0.63014					5	3	2	0	0	0	0.9889	1	7787	7787		6.6235	5.1683	1	2669600	+		20139	26012	14484	14591	19756	19756					0.01399335111864275
HSWARCACF	9	Unmodified	_HSWARCACF_					0	0	0		ENST00000407472.5_1_22:19838375-19838693:-|nuORF	ENST00000407472.5_1_22:19838375-19838693:-|nuORF	ENST00000407472.5_1_22:19838375-19838693:-|nuORF	MSMS	A375_MHC_IP_R2	2	540.7300415039062	2	540.728746	1079.44294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.2	1	123.58	123.08	124.08	0.3766								0	0	0	0.15486	1	47298	47298		4.3292	0	1				20140	11611	14485	14592	19757	19757					-0.09360436451834175
HSWWCVFWDLY	11	Unmodified	_HSWWCVFWDLY_					0	0	0		ENST00000506960.5_1_5:80911285-80946133:-|nuORF;ENST00000598159.6_1_19:18538161-18542842:+|nuORF;nc|ENSG00000145687|P81877-2|SSBP2;nc|ENSG00000145687|P81877-4|SSBP2;nc|ENSG00000145687|P81877-5|SSBP2;nc|ENSG00000145687|P81877-3|SSBP2;nc|ENSG00000157216|Q9BWW4-2|SSBP3;nc|ENSG00000145687|P81877|SSBP2;nc|ENSG00000130511|Q9BWG4-2|SSBP4;nc|ENSG00000157216|Q9BWW4-3|SSBP3;ENSG00000145687|ENST00000615665|SSBP2;ENSG00000130511|ENST00000270061|SSBP4;ENSG00000157216|ENST00000610401|SSBP3;ENST00000589764.1_1_18:12067489-12068164:-|nuORF	ENST00000506960.5_1_5:80911285-80946133:-|nuORF	ENST00000506960.5_1_5:80911285-80946133:-|nuORF	MSMS	A375_MHC_IP_R2	2	514.5462036132812	3	514.56054	1540.65979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.426	1	99.186	98.686	99.686	0.75977								0	0	0	0.1635	1	37341	37341		0.50596	0	1				20141	4248	14486	14593	19758	19758					-0.0889118241725555
HSYNPKEFEW	10	Unmodified	_HSYNPKEFEW_					0	0	0		ENSG00000149658|ENST00000370339|YTHDF1	ENSG00000149658|ENST00000370339|YTHDF1	ENSG00000149658|ENST00000370339|YTHDF1	MULTI-SECPEP	A375_MHC_IP_R1	1	669.2014770507812	2	668.801477	1335.5884	-0.45574	-0.0003048	-0.13788	-9.2212E-05	-0.59362	-0.00039701	668.801393690373	53.835	0.4073	53.835	53.555	53.962	0					12	7	2	0	0	0	0.81668	1	19228	19228		27.088	18.112	1	2917600			20142	5825	14487	14594	19759	19759					-0.06596978850302548
HSYNPKEFEW	10	Unmodified	_HSYNPKEFEW_					0	0	0		ENSG00000149658|ENST00000370339|YTHDF1	ENSG00000149658|ENST00000370339|YTHDF1	ENSG00000149658|ENST00000370339|YTHDF1	MULTI-MATCH	A375_MHC_IP_R2	2		2	668.801477	1335.5884	-1.3537	-0.00090535	0.57967	0.00038768	-0.77402	-0.00051766	669.3035876168567	53.065	0.45837	53.816	53.638	54.097	0.75105	-0.0092848	0.00043887	NaN	27.088	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2196900			20143	5825	14487	14594							-0.06596978850302548
HSYPGASGW	9	Unmodified	_HSYPGASGW_					0	0	0		ENSG00000160551|ENST00000261716|TAOK1;nc|ENSG00000160551|Q7L7X3-3|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MULTI-MSMS	A375_MHC_IP_R1	1	481.6115417480469	2	481.211766	960.40898	-0.53054	-0.0002553	0.30723	0.00014784	-0.22331	-0.00010746	481.2118611895475	39.563	1.0665	39.563	39.238	40.304	0					46	20	4	0	0	0	0.005759	2	13497	13497;13561		133.7	84.033	1	50541000			20144	6424	14488	14595	19760;19761	19760					-0.0728081834756722
HSYPGASGW	9	Unmodified	_HSYPGASGW_					0	0	0		ENSG00000160551|ENST00000261716|TAOK1;nc|ENSG00000160551|Q7L7X3-3|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MULTI-MSMS	A375_MHC_IP_R2	2	481.6111755371094	2	481.211766	960.40898	-0.84066	-0.00040453	0.03946	1.8989E-05	-0.8012	-0.00038555	481.2117590061096	38.808	1.1201	39.582	39.2	40.32	0.77451					49	21	4	0	0	0	0.0093345	2	14267	14267;14315		104.8	55.13	1	33589000			20145	6424	14488	14595	19762;19763	19762					-0.0728081834756722
HTAPNDGYQ	9	Unmodified	_HTAPNDGYQ_					0	0	0			REV__nc|ENSG00000205221|Q6UXI7-2|VIT	REV__nc|ENSG00000205221|Q6UXI7-2|VIT	MULTI-MSMS	A375_MHC_IP_R1	1	501.6935729980469	2	501.717413	1001.42027	-0.30143	-0.00015124	-0.0029428	-1.4764E-06	-0.30438	-0.00015271	501.71730145520513	70.913	0.66479	70.913	70.494	71.159	0					29	12	3	0	0	0	0.61998	3	25771	25709;25771;25811		13.906	4.5586	1	3656200	+		20146	22564	14489	14596	19764;19765;19766	19765					-0.08038041044096644
HTAPNDGYQ	9	Unmodified	_HTAPNDGYQ_					0	0	0			REV__nc|ENSG00000205221|Q6UXI7-2|VIT	REV__nc|ENSG00000205221|Q6UXI7-2|VIT	MULTI-MSMS	A375_MHC_IP_R2	2	501.6939697265625	2	501.717413	1001.42027	-0.5474	-0.00027464	-0.4124	-0.00020691	-0.9598	-0.00048155	501.7171783696779	70.123	0.76286	70.858	70.488	71.251	0.73421					32	14	3	0	0	0	0.67332	2	26536	26536;26556		9.3831	0.15213	1	3878100	+		20147	22564	14489	14596	19767;19768	19767					-0.08038041044096644
HTDDPLTW	8	Unmodified	_HTDDPLTW_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000583408.5_1_17:30207568-30228646:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MSMS	A375_MHC_IP_R2	2	492.67926025390625	2	492.724707	983.43486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.558	1	67.295	66.795	67.795	0.73631								0	0	0	0.16876	1	25217	25217		23.148	6.2061	1				20148	2825	14490	14597	19769	19769					-0.057519688959587256
HTDDPLTWDY	10	Unmodified	_HTDDPLTWDY_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000583408.5_1_17:30207568-30228646:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	A375_MHC_IP_R1	1	631.1618041992188	2	631.769842	1261.52513	-0.84248	-0.00053225	-0.27335	-0.0001727	-1.1158	-0.00070495	631.7699613361053	84.636	1.9307	84.636	84.141	86.072	0					142	37	7	0	0	0	0.0024009	2	31071	30923;31071		139.14	110.06	1	118320000			20149	2825	14491	14598	19770;19771	19771					-0.09516964358181212
HTDDPLTWDY	10	Unmodified	_HTDDPLTWDY_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000583408.5_1_17:30207568-30228646:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	A375_MHC_IP_R2	2	631.7643432617188	2	631.769842	1261.52513	-0.72721	-0.00045943	0.12315	7.7802E-05	-0.60406	-0.00038163	631.7699075518178	84.103	1.9371	84.842	84.356	86.293	0.73962					102	37	4	0	0	0	0.0024009	1	32054	32054		139.14	104.74	1	130260000			20150	2825	14491	14598	19772	19772					-0.09516964358181212
HTDDPLTWDY	10	Unmodified	_HTDDPLTWDY_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000583408.5_1_17:30207568-30228646:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MSMS	A375_MHC_IP_R2	2	631.7536010742188	2	631.769842	1261.52513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.441	1	87.174	86.674	87.674	0.733								0	0	0	0.15265	1	32873	32873		12.241	2.1667	1				20151	2825	14491	14598	19773	19773					-0.09516964358181212
HTDILKEKY	9	Unmodified	_HTDILKEKY_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-MSMS	A375_MHC_IP_R1	1	383.27679443359375	3	382.876634	1145.60807	0.21476	8.2226E-05	-0.085725	-3.2822E-05	0.12903	4.9404E-05	382.8766485892552	24.578	2.279	24.578	24.296	26.575	0					108	44	6	0	0	0	0.0027482	3	7005	6982;7003;7005		157.49	73.167	1	860090000			20152	2480	14492	14599	19774;19775;19776	19776					0.04109397160482331
HTDILKEKY	9	Unmodified	_HTDILKEKY_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-SECPEP	A375_MHC_IP_R1	1	574.211181640625	2	573.811313	1145.60807	-0.32361	-0.00018569	0.022407	1.2858E-05	-0.3012	-0.00017283	573.8112603371169	24.601	0.50545	24.601	24.447	24.953	0					26	9	3	0	0	0	0.011293	1	7035	7035		159.1	97.499	1	42595000			20153	2480	14492	14599	19777	19777					0.04109397160482331
HTDILKEKY	9	Unmodified	_HTDILKEKY_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-MSMS	A375_MHC_IP_R2	2	383.27642822265625	3	382.876634	1145.60807	-0.34946	-0.0001338	0.28614	0.00010956	-0.063316	-2.4242E-05	382.8768122514328	23.932	0.71307	24.563	24.283	24.996	0.63015					43	13	6	0	0	0	0.0027482	3	7755	7748;7755;7784		168.9	95.706	1	825610000			20154	2480	14492	14599	19778;19779;19780	19779					0.04109397160482331
HTDILKEKY	9	Unmodified	_HTDILKEKY_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-SECPEP	A375_MHC_IP_R2	2	383.27642822265625	3	382.876634	1145.60807	-0.39811	-0.00015243	0.3469	0.00013282	-0.051212	-1.9608E-05	382.87676771402926	24.288	1.6263	24.932	24.755	26.382	0.64368					69	31	5	0	0	0	0.064556	1	8029	8029		85.764	51.543	1	274980000			20155	2480	14492	14599	19781	19781					0.04109397160482331
HTDILKEKY	9	Unmodified	_HTDILKEKY_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-SECPEP	A375_MHC_IP_R2	2	574.2109375	2	573.811313	1145.60807	-0.47782	-0.00027418	0.11219	6.4378E-05	-0.36563	-0.0002098	573.8112865239756	23.933	0.35767	24.563	24.384	24.742	0.63014					19	6	4	0	0	0	0.011293	1	7763	7763		159.1	97.499	1	39235000			20156	2480	14492	14599	19782	19782					0.04109397160482331
HTDILKEKY	9	Unmodified	_HTDILKEKY_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-MATCH	A375_MHC_IP_R2	2		2	573.811313	1145.60807	-0.52248	-0.0002998	0.0081988	4.7046E-06	-0.51428	-0.0002951	573.8112292981787	24.279	0.25396	24.922	24.755	25.009	0.64368	0.16082	-1.3101E-05	NaN	159.1	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12997000			20157	2480	14492	14599							0.04109397160482331
HTDIRSQLRY	10	Unmodified	_HTDIRSQLRY_					0	0	0		RIC8B|p.P316*|1|0.32|ENSG00000111785|chr12:106842697-106842701|GCCCA/-|frameshift_variant;nc|ENSG00000111785|Q9NVN3-3|RIC8B;nc|ENSG00000111785|Q9NVN3|RIC8B;nc|ENSG00000111785|Q9NVN3-1|RIC8B;ENSG00000111785|ENST00000392837|RIC8B	RIC8B|p.P316*|1|0.32|ENSG00000111785|chr12:106842697-106842701|GCCCA/-|frameshift_variant	RIC8B|p.P316*|1|0.32|ENSG00000111785|chr12:106842697-106842701|GCCCA/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	430.6301574707031	3	430.230071	1287.66838	-0.31049	-0.00013358	0.019797	8.5174E-06	-0.2907	-0.00012507	430.2300528352127	28.92	0.91343	28.92	28.339	29.252	0					23	17	2	0	0	0	0.17118	1	8963	8963		52.193	35.144	1	16565000			20158	3027	14493	14600	19783	19783					0.03605507543556996
HTDIRSQLRY	10	Unmodified	_HTDIRSQLRY_					0	0	0		RIC8B|p.P316*|1|0.32|ENSG00000111785|chr12:106842697-106842701|GCCCA/-|frameshift_variant;nc|ENSG00000111785|Q9NVN3-3|RIC8B;nc|ENSG00000111785|Q9NVN3|RIC8B;nc|ENSG00000111785|Q9NVN3-1|RIC8B;ENSG00000111785|ENST00000392837|RIC8B	RIC8B|p.P316*|1|0.32|ENSG00000111785|chr12:106842697-106842701|GCCCA/-|frameshift_variant	RIC8B|p.P316*|1|0.32|ENSG00000111785|chr12:106842697-106842701|GCCCA/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	430.6297302246094	3	430.230071	1287.66838	-0.44823	-0.00019284	-0.2643	-0.00011371	-0.71252	-0.00030655	430.2299598170147	28.154	0.45618	28.833	28.604	29.06	0.67857					16	8	2	0	0	0	0.15548	1	9687	9687		53.798	36.749	1	18381000			20159	3027	14493	14600	19784	19784					0.03605507543556996
HTDMADIEQY	10	Unmodified	_HTDMADIEQY_					0	0	0		ENSG00000185818|ENST00000423729|NAT8L	ENSG00000185818|ENST00000423729|NAT8L	ENSG00000185818|ENST00000423729|NAT8L	MULTI-SECPEP	A375_MHC_IP_R1	1	612.1558837890625	2	611.755878	1221.4972	-0.32919	-0.00020138	0.21792	0.00013331	-0.11127	-6.8071E-05	611.7560490394434	50.746	0.35408	50.746	50.51	50.864	0					12	6	3	0	0	0	0.22459	1	18020	18020		57.722	38.465	1	1868700			20160	8695	14494	14601	19785	19785					-0.10468610609927964
HTDPDYSAAY	10	Unmodified	_HTDPDYSAAY_					0	0	0		ENST00000578651.5_1_18:683014-712587:-|nuORF;ENSG00000132199|ENST00000647584|ENOSF1;nc|ENSG00000132199|Q7L5Y1-4|ENOSF1;nc|ENSG00000132199|Q7L5Y1-5|ENOSF1;nc|ENSG00000132199|Q7L5Y1-3|ENOSF1;ENST00000580605.5_1_18:693172-712587:-|nuORF;ENST00000579053.5_1_18:691132-706776:-|nuORF	ENST00000578651.5_1_18:683014-712587:-|nuORF	ENST00000578651.5_1_18:683014-712587:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	570.6354370117188	2	570.235635	1138.45672	-0.34263	-0.00019538	0.059235	3.3778E-05	-0.28339	-0.0001616	570.2356487624972	31.338	0.81056	31.338	30.959	31.769	0					34	15	3	0	0	0	0.082288	1	9977	9977		74.929	61.887	1	11392000			20161	4381	14495	14602	19786	19786					-0.1069720893806334
HTDPDYSAAY	10	Unmodified	_HTDPDYSAAY_					0	0	0		ENST00000578651.5_1_18:683014-712587:-|nuORF;ENSG00000132199|ENST00000647584|ENOSF1;nc|ENSG00000132199|Q7L5Y1-4|ENOSF1;nc|ENSG00000132199|Q7L5Y1-5|ENOSF1;nc|ENSG00000132199|Q7L5Y1-3|ENOSF1;ENST00000580605.5_1_18:693172-712587:-|nuORF;ENST00000579053.5_1_18:691132-706776:-|nuORF	ENST00000578651.5_1_18:683014-712587:-|nuORF	ENST00000578651.5_1_18:683014-712587:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	570.6732177734375	2	570.235635	1138.45672	-0.33492	-0.00019098	-0.12873	-7.3407E-05	-0.46365	-0.00026439	570.2355531375663	30.723	0.65604	31.442	31.165	31.821	0.71857					30	12	3	0	0	0	0.17045	1	10897	10897		52.268	37.02	1	10227000			20162	4381	14495	14602	19787	19787					-0.1069720893806334
HTDPVHLYK	9	Unmodified	_HTDPVHLYK_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	A375_MHC_IP_R1	1	370.92962646484375	3	370.529458	1108.56654	0.41465	0.00015364	0.11316	4.193E-05	0.52781	0.00019557	370.52939847673935	23.049	0.50359	23.049	22.723	23.227	0					22	9	3	0	0	0	0.074562	1	6264	6264		55.235	40.829	1	13660000			20163	8538	14496	14603	19788	19788					0.01660261191796053
HTDPVHLYK	9	Unmodified	_HTDPVHLYK_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-SECPEP	A375_MHC_IP_R2	2	370.92950439453125	3	370.529458	1108.56654	0.024165	8.9539E-06	0.16065	5.9527E-05	0.18482	6.8481E-05	370.52950670392414	20.69	0.75984	21.3	20.907	21.666	0.61029					37	14	3	0	0	0	0.49205	1	6405	6405		11.518	7.6415	1	3950300			20164	8538	14496	14603	19789	19789					0.01660261191796053
HTDVGLLEY	9	Unmodified	_HTDVGLLEY_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;ENST00000542565.1_1_12:124970985-124979836:-|nuORF	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	A375_MHC_IP_R1	1	1047.8670654296875	1	1046.5153	1045.50803	0.26059	0.00027272	-0.34103	-0.00035689	-0.080434	-8.4175E-05	1046.5148894744636	71.082	0.56458	71.082	70.749	71.313	0					22	10	3	0	0	0	0.091096	1	25817	25817		52.268	36.421	1	7500400			20165	9048	14497	14604	19790	19790					-0.012908401733284336
HTDVGLLEY	9	Unmodified	_HTDVGLLEY_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;ENST00000542565.1_1_12:124970985-124979836:-|nuORF	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-SECPEP	A375_MHC_IP_R1	1	524.1611938476562	2	523.761289	1045.50803	-0.37408	-0.00019593	-0.17735	-9.2887E-05	-0.55143	-0.00028882	523.7611532871612	71.082	1.5723	71.082	70.648	72.22	0					65	30	4	0	0	0	0.047455	1	25742	25742		88.904	24.667	1	85549000			20166	9048	14497	14604	19791	19791					-0.012908401733284336
HTDVGLLEY	9	Unmodified	_HTDVGLLEY_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;ENST00000542565.1_1_12:124970985-124979836:-|nuORF	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	A375_MHC_IP_R2	2	523.6360473632812	2	523.761289	1045.50803	-0.48899	-0.00025612	-0.52728	-0.00027617	-1.0163	-0.00053229	523.7609839707749	70.273	1.9757	71.007	70.591	72.567	0.73421					81	38	4	0	0	0	0.0090669	1	26635	26635		100.37	25.949	1	58820000			20167	9048	14497	14604	19792	19792					-0.012908401733284336
HTDVGLLEY	9	Unmodified	_HTDVGLLEY_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;ENST00000542565.1_1_12:124970985-124979836:-|nuORF	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MATCH	A375_MHC_IP_R2	2		1	1046.5153	1045.50803	0.10987	0.00011498	-0.5511	-0.00057674	-0.44124	-0.00046176	1046.5145720726455	70.267	0.55948	71.002	70.743	71.302	0.73421	-0.040397	-0.00012486	NaN	52.268	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5778200			20168	9048	14497	14604							-0.012908401733284336
HTDWLLDLY	9	Unmodified	_HTDWLLDLY_					0	0	0		ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	MULTI-MSMS	A375_MHC_IP_R1	1	588.689208984375	2	588.290214	1174.56587	-0.15837	-9.317E-05	-0.81425	-0.00047902	-0.97262	-0.00057219	588.2898236600113	125.88	0.39989	125.88	125.75	126.15	0					13	7	3	0	0	0	0.0093345	1	48028	48028		104.8	53.944	1	25551000			20169	4501	14498	14605	19793	19793					-0.0144257824788383
HTDWLLDLY	9	Unmodified	_HTDWLLDLY_					0	0	0		ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	MULTI-MSMS	A375_MHC_IP_R2	2	588.6891479492188	2	588.290214	1174.56587	-0.52646	-0.00030971	-1.0959	-0.0006447	-1.6223	-0.00095441	588.2894955362956	125.45	0.29999	125.75	125.62	125.92	0.2951					12	5	3	0	0	0	0.0090669	1	48966	48966		100.37	49.516	1	23108000			20170	4501	14498	14605	19794	19794					-0.0144257824788383
HTECGFCNIY	10	Unmodified	_HTECGFCNIY_					0	0	0			REV__ENST00000586392.1_1_19:34884680-34890938:+|nuORF	REV__ENST00000586392.1_1_19:34884680-34890938:+|nuORF	MSMS	A375_MHC_IP_R1	1	593.8421630859375	2	593.736434	1185.45831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.21	1	105.21	104.71	105.71	0								0	0	0	0.1552	1	38628	38628		3.9444	0	1		+	+	20171	15889	14499	14606	19795	19795					-0.12699614445273255
HTEDKILRL	9	Unmodified	_HTEDKILRL_					0	0	0		tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1	tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1	tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1	MSMS	A375_MHC_IP_R1	1	562.7614135742188	2	562.824755	1123.63496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.82	1	137.82	137.32	138.32	0								0	0	0	0.15486	1	53038	53038		7.2892	4.0079	1				20172	29683	14500	14607	19796	19796					0.07808505771663476
HTEERLLRY	9	Unmodified	_HTEERLLRY_					0	0	0		ENSG00000047346|ENST00000619572|ATOSA;nc|ENSG00000047346|Q32MH5-3|ATOSA;ENST00000534964.6_1_15:52874353-52879255:-|nuORF;ENST00000568871.1_1_15:52874353-52877153:-|nuORF	ENSG00000047346|ENST00000619572|ATOSA	ENSG00000047346|ENST00000619572|ATOSA	MULTI-MSMS	A375_MHC_IP_R1	1	406.6195068359375	3	406.219283	1215.63602	-0.5114	-0.00020774	0.23486	9.5405E-05	-0.27653	-0.00011233	406.21949981267625	26.988	0.95594	26.988	26.728	27.684	0					28	18	3	0	0	0	0.021859	2	8120	8079;8120		81.915	48.47	1	6621800			20173	1198	14501	14608	19797;19798	19798					0.03682720140568563
HTEERLLRY	9	Unmodified	_HTEERLLRY_					0	0	0		ENSG00000047346|ENST00000619572|ATOSA;nc|ENSG00000047346|Q32MH5-3|ATOSA;ENST00000534964.6_1_15:52874353-52879255:-|nuORF;ENST00000568871.1_1_15:52874353-52877153:-|nuORF	ENSG00000047346|ENST00000619572|ATOSA	ENSG00000047346|ENST00000619572|ATOSA	MSMS	A375_MHC_IP_R2	2	406.27679443359375	3	406.219283	1215.63602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.269	1	26.928	26.428	27.428	0.65992								0	0	0	0.014477	1	8862	8862		90.135	58.867	1				20174	1198	14501	14608	19799	19799					0.03682720140568563
HTEFFVQVI	9	Unmodified	_HTEFFVQVI_					0	0	0			REV__ENST00000359314.5_1_6:47594217-47594301:+|nuORF	REV__ENST00000359314.5_1_6:47594217-47594301:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	373.2538757324219	3	373.865958	1118.57605	0.24338	9.0993E-05	-0.22734	-8.4995E-05	0.016045	5.9986E-06	373.8658507906467	55.031	0.40863	55.782	55.575	55.984	0.75075					11	7	2	0	0	0	0.55359	1	20703	20703		15.248	10.72	1	1278700	+		20175	23873	14502	14609	19800	19800					0.02150029477343196
HTERDPVLWS	10	Unmodified	_HTERDPVLWS_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	A375_MHC_IP_R1	1	414.27532958984375	3	413.875405	1238.60439	0.11364	4.7031E-05	-0.04675	-1.9349E-05	0.066885	2.7682E-05	413.8754731358951	30.968	0.7616	30.968	30.703	31.465	0					23	14	3	0	0	0	0.70793	1	9885	9885		5.0475	0.64137	1	5095700			20176	7831	14503	14610	19801	19801					-0.00537272613382811
HTETGNRF	8	Unmodified	_HTETGNRF_					0	0	0			REV__ENSG00000148386|ENST00000619315|LCN9	REV__ENSG00000148386|ENST00000619315|LCN9	MULTI-SECPEP	A375_MHC_IP_R1	1	480.63226318359375	2	481.227948	960.441343	-0.36665	-0.00017644	-0.79974	-0.00038486	-1.1664	-0.0005613	481.22712834649616	33.49	0.30556	33.49	33.342	33.648	0					7	5	2	0	0	0	0.92636	1	10986	10986		16.942	0	1	1042200	+		20177	19628	14504	14611	19802	19802					-0.04046030944573431
HTFQNDIHVY	10	Unmodified	_HTFQNDIHVY_					0	0	0		nc|ENSG00000116133|Q15392-2|DHCR24;ENSG00000116133|ENST00000371269|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	MULTI-MSMS	A375_MHC_IP_R1	1	637.7017211914062	2	637.301644	1272.58874	-0.57149	-0.00036421	-0.003625	-2.3102E-06	-0.57512	-0.00036652	637.3016558773688	43.376	0.96666	43.376	43.095	44.061	0					54	18	5	0	0	0	0.0088303	1	15048	15048		159.1	139.74	1	54470000			20178	3373	14505	14612	19803	19803					-0.0366555913042248
HTFQNDIHVY	10	Unmodified	_HTFQNDIHVY_					0	0	0		nc|ENSG00000116133|Q15392-2|DHCR24;ENSG00000116133|ENST00000371269|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	MULTI-MSMS	A375_MHC_IP_R2	2	637.7012939453125	2	637.301644	1272.58874	-0.70832	-0.00045141	-0.18736	-0.0001194	-0.89568	-0.00057082	637.3015569633282	42.671	1.0649	43.443	43.065	44.13	0.7724					54	20	5	0	0	0	2.8869E-05	1	15826	15826		171.46	149.93	1	55123000			20179	3373	14505	14612	19804	19804					-0.0366555913042248
HTGAKESWSY	10	Unmodified	_HTGAKESWSY_					0	0	0			REV__nc|ENSG00000117090|Q13291-2|SLAMF1	REV__nc|ENSG00000117090|Q13291-2|SLAMF1	MULTI-SECPEP	A375_MHC_IP_R1	1	388.6060485839844	3	389.180605	1164.51999	0.18801	7.3168E-05	-0.048858	-1.9015E-05	0.13915	5.4153E-05	389.1805438556444	28.364	0.30315	28.364	28.238	28.541	0					9	5	2	0	0	0	0.93578	1	8805	8805		5.7834	5.7834	1	2061900	+		20180	17991	14506	14613	19805	19805					-0.055692234301204735
HTGTKEFNFL	10	Unmodified	_HTGTKEFNFL_					0	0	0		nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6;ENSG00000253305|ENST00000520790|PCDHGB6	nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6	nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6	MULTI-SECPEP	A375_MHC_IP_R2	2	397.9364013671875	3	398.536501	1192.58767	-0.26899	-0.0001072	0.3394	0.00013526	0.070411	2.8061E-05	398.5366664811344	51.432	0.35481	52.184	51.966	52.321	0.75225					10	6	2	0	0	0	0.92227	1	19387	19387		11.518	6.1152	1	1109400			20181	9858	14507	14614	19806	19806					-0.0009177349932087964
HTHERERDLWQ	11	Unmodified	_HTHERERDLWQ_					0	0	0		nc|ENSG00000181626|A6NC57-2|ANKRD62;ENST00000418274.2_1_18:12102771-12127935:+|nuORF;ENSG00000181626|ENST00000587848|ANKRD62	nc|ENSG00000181626|A6NC57-2|ANKRD62	nc|ENSG00000181626|A6NC57-2|ANKRD62	MSMS	A375_MHC_IP_R2	2	502.97625732421875	3	502.911401	1505.71237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.706	1	23.336	22.836	23.836	0.63014								0	0	0	0.16316	1	7228	7228		2.2527	0	1				20182	8354	14508	14615	19807	19807					-0.02025508030101264
HTHRRLYIS	9	Unmodified	_HTHRRLYIS_					0	0	0			REV__ENST00000556454.1_1_14:95660863-95677170:-|nuORF	REV__ENST00000556454.1_1_14:95660863-95677170:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	395.2878723144531	3	394.887868	1181.64177	-0.53268	-0.00021035	0.18943	7.4802E-05	-0.34325	-0.00013555	394.8878807332892	26.478	0.71069	27.138	26.703	27.414	0.65992					28	12	3	0	0	0	0.70902	1	8989	8989		6.1918	0.78914	1	4578600	+		20183	20639	14509	14616	19808	19808					0.05821863442884023
HTIELEPNRQF	11	Unmodified	_HTIELEPNRQF_					0	0	0		ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	MULTI-SECPEP	A375_MHC_IP_R2	2	461.301513671875	3	461.905364	1382.69426	-0.55552	-0.0002566	-0.21759	-0.00010051	-0.77311	-0.00035711	461.90527361572646	45.242	0.35503	46.007	45.846	46.201	0.76518					9	6	2	0	0	0	0.99548	1	16884	16884		8.7518	8.7518	1	1614600			20184	5980	14510	14617	19809	19809					0.018223569951715035
HTIGGSRRAAW	11	Unmodified	_HTIGGSRRAAW_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	A375_MHC_IP_R1	1	404.95135498046875	3	404.551256	1210.63194	-0.41076	-0.00016618	0.28125	0.00011378	-0.12952	-5.2397E-05	404.55151004924244	20.126	0.5573	20.126	19.877	20.435	0					23	10	3	0	0	0	0.71778	1	5117	5117		14.171	2.5394	1	2816900			20185	7898	14511	14618	19810	19810					0.03504675437511651
HTIKPALVGW	10	Unmodified	_HTIKPALVGW_					0	0	0		ENSG00000115919|ENST00000264170|KYNU	ENSG00000115919|ENST00000264170|KYNU	ENSG00000115919|ENST00000264170|KYNU	MULTI-SECPEP	A375_MHC_IP_R1	1	561.7266235351562	2	561.326934	1120.63931	-0.50272	-0.00028219	0.06302	3.5375E-05	-0.4397	-0.00024682	561.3266855151026	61.05	0.56039	61.05	60.77	61.331	0					20	10	3	0	0	0	0.52855	1	22002	22002		65.474	49.627	1	5175700			20186	3350	14512	14619	19811	19811					0.08382014985227215
HTIKPALVGW	10	Unmodified	_HTIKPALVGW_					0	0	0		ENSG00000115919|ENST00000264170|KYNU	ENSG00000115919|ENST00000264170|KYNU	ENSG00000115919|ENST00000264170|KYNU	MULTI-SECPEP	A375_MHC_IP_R2	2	561.7263793945312	2	561.326934	1120.63931	-0.9378	-0.00052641	-0.01618	-9.082E-06	-0.95398	-0.0005355	561.3266402983214	60.111	0.86551	60.858	60.45	61.316	0.74714					28	16	3	0	0	0	0.45119	1	22726	22726		55.235	48.511	1	3935900			20187	3350	14512	14619	19812	19812					0.08382014985227215
HTINKDALYVS	11	Unmodified	_HTINKDALYVS_					0	0	0			REV__ENPP3|p.F681V|1|0.37|ENSG00000154269|chr6:131733675-131733675|T/G|missense_variant	REV__ENPP3|p.F681V|1|0.37|ENSG00000154269|chr6:131733675-131733675|T/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	421.2906799316406	3	420.890944	1259.651	-0.41815	-0.00017599	0.38214	0.00016084	-0.036004	-1.5154E-05	420.89091402001173	24.391	0.65958	25.035	24.705	25.364	0.64368					24	12	3	0	0	0	0.72773	1	8012	8012		11.065	0	1	8599100	+		20188	16078	14513	14620	19813	19813					0.031561672178895606
HTIQIRQDW	9	Unmodified	_HTIQIRQDW_					0	0	0		nc|ENSG00000144401|Q8WXB1-2|METTL21A;ENST00000471128.1_1_2:208485467-208489843:-|nuORF;ENSG00000144401|ENST00000411432|METTL21A	nc|ENSG00000144401|Q8WXB1-2|METTL21A	nc|ENSG00000144401|Q8WXB1-2|METTL21A	MULTI-SECPEP	A375_MHC_IP_R1	1	599.2119750976562	2	598.812179	1195.60981	-0.25902	-0.00015511	0.15887	9.5132E-05	-0.10016	-5.9974E-05	598.8120518173579	42.411	0.60686	42.411	42.183	42.79	0					25	11	3	0	0	0	0.31976	1	14697	14697		51.488	20.851	1	3364100			20189	5484	14514	14621	19814	19814					0.01982450969057936
HTIQIRQDW	9	Unmodified	_HTIQIRQDW_					0	0	0		nc|ENSG00000144401|Q8WXB1-2|METTL21A;ENST00000471128.1_1_2:208485467-208489843:-|nuORF;ENSG00000144401|ENST00000411432|METTL21A	nc|ENSG00000144401|Q8WXB1-2|METTL21A	nc|ENSG00000144401|Q8WXB1-2|METTL21A	MULTI-SECPEP	A375_MHC_IP_R2	2	599.2120971679688	2	598.812179	1195.60981	-0.60087	-0.00035981	0.35952	0.00021529	-0.24134	-0.00014452	598.8123466807205	41.58	0.56016	42.354	42.149	42.709	0.77451					19	10	2	0	0	0	0.42978	1	15461	15461		42.835	34.09	1	2581500			20190	5484	14514	14621	19815	19815					0.01982450969057936
HTKIPFINW	9	Unmodified	_HTKIPFINW_					0	0	0		nc|ENSG00000102007|Q04941-2|PLP2;ENSG00000102007|ENST00000376327|PLP2	nc|ENSG00000102007|Q04941-2|PLP2	nc|ENSG00000102007|Q04941-2|PLP2	MULTI-SECPEP	A375_MHC_IP_R1	1	578.8853149414062	2	578.319109	1154.62366	0.03744	2.1652E-05	0.38525	0.0002228	0.42269	0.00024445	578.8199839067174	92.458	0.81145	92.458	92.11	92.922	0					32	15	3	0	0	0	0.73926	1	34095	34095		24.021	4.5816	1	1541700			20191	2348	14515	14622	19816	19816					0.05253728468164809
HTLDDRTQLW	10	Unmodified	_HTLDDRTQLW_					0	0	0		nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	MULTI-SECPEP	A375_MHC_IP_R2	2	429.28216552734375	3	428.882559	1283.62585	-0.57156	-0.00024513	0.14295	6.131E-05	-0.4286	-0.00018382	428.8826356047103	52.134	0.65917	52.886	52.626	53.285	0.75225					25	12	3	0	0	0	0.69834	1	19636	19636		29.437	17.21	1	5089400			20192	1855	14516	14623	19817	19817					-0.004618875846517767
HTLDDRTQLW	10	Unmodified	_HTLDDRTQLW_					0	0	0		nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	428.882559	1283.62585	-0.31866	-0.00013667	0.30442	0.00013056	-0.014237	-6.1059E-06	428.88271394711256	52.885	0.65826	52.885	52.592	53.25	0	-0.00081669	9.4492E-05	NaN	29.437	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4267100			20193	1855	14516	14623							-0.004618875846517767
HTLDGRVLF	9	Unmodified	_HTLDGRVLF_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	A375_MHC_IP_R1	1	529.6926879882812	2	529.293091	1056.57163	-0.54123	-0.00028647	-0.018852	-9.978E-06	-0.56008	-0.00029645	529.2931097837417	57.441	1.5754	57.441	57.211	58.786	0					50	30	3	0	0	0	0.34746	1	20598	20598		38.176	11.292	1	6427100			20194	7431	14517	14624	19818	19818					0.04560565054430299
HTLDGRVLF	9	Unmodified	_HTLDGRVLF_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	A375_MHC_IP_R2	2	529.6929321289062	2	529.293091	1056.57163	-0.92593	-0.00049009	0.034574	1.83E-05	-0.89135	-0.00047179	529.2931988642234	56.479	0.76487	57.229	56.847	57.612	0.75015					32	14	3	0	0	0	0.087712	1	21333	21333		66.457	28.483	1	5485400			20195	7431	14517	14624	19819	19819					0.04560565054430299
HTLENQREF	9	Unmodified	_HTLENQREF_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	A375_MHC_IP_R1	1	587.685791015625	2	587.285994	1172.55744	-0.53601	-0.00031479	0.2202	0.00012932	-0.31581	-0.00018547	587.2860982685343	23.457	0.30649	23.457	23.278	23.584	0					12	5	3	0	0	0	0.0042961	1	6449	6449		136.39	66.06	1	11278000			20196	9060	14518	14625	19820	19820					-0.021941321645272183
HTLENQREF	9	Unmodified	_HTLENQREF_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-SECPEP	A375_MHC_IP_R2	2	587.6857299804688	2	587.285994	1172.55744	-0.90159	-0.00052949	0.25251	0.0001483	-0.64907	-0.00038119	587.2862465597501	21.208	0.35306	21.827	21.575	21.928	0.61932					15	6	3	0	0	0	0.39273	1	6642	6642		43.982	11.196	1	3618700			20197	9060	14518	14625	19821	19821					-0.021941321645272183
HTLWTTRTETK	11	Unmodified	_HTLWTTRTETK_					0	0	0			REV__MUC16|p.E10676K|2|0.5|ENSG00000181143|chr19:8938929-8938929|C/T|missense_variant	REV__MUC16|p.E10676K|2|0.5|ENSG00000181143|chr19:8938929-8938929|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	458.976806640625	3	458.577247	1372.70991	-0.60248	-0.00027628	-0.059415	-2.7247E-05	-0.66189	-0.00030353	458.5771708579334	23.887	0.56027	24.517	24.384	24.944	0.63014					24	10	3	0	0	0	0.73135	1	7785	7785		3.8459	0.25323	1	13227000	+		20198	27046	14519	14626	19822	19822					0.03846643512224546
HTNKYENNKLI	11	Unmodified	_HTNKYENNKLI_					0	0	0		F13A1|p.D68N|1|0.18|ENSG00000124491|chr6:6305468-6305468|C/T|missense_variant	F13A1|p.D68N|1|0.18|ENSG00000124491|chr6:6305468-6305468|C/T|missense_variant	F13A1|p.D68N|1|0.18|ENSG00000124491|chr6:6305468-6305468|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	459.311279296875	3	458.577247	1372.70991	-0.33923	-0.00015556	-0.2755	-0.00012634	-0.61473	-0.0002819	458.57712457472627	24.572	0.50545	24.572	24.447	24.953	0					18	9	2	0	0	0	0.99424	1	7023	7023		4.1166	0	1	15316000			20199	13965	14520	14627	19823	19823					0.03846643512224546
HTNPVGTEW	9	Unmodified	_HTNPVGTEW_					0	0	0		ENSG00000198874|ENST00000359626|TYW1	ENSG00000198874|ENST00000359626|TYW1	ENSG00000198874|ENST00000359626|TYW1	MULTI-SECPEP	A375_MHC_IP_R1	1	521.1428833007812	2	520.743431	1039.47231	-0.48128	-0.00025062	-0.3433	-0.00017877	-0.82458	-0.00042939	520.7429358879932	40.782	0.60683	40.782	40.406	41.013	0					24	11	3	0	0	0	0.11849	1	14027	14027		61.602	13.256	1	10497000			20200	9356	14521	14628	19824	19824					-0.04584877630327355
HTNPVGTEW	9	Unmodified	_HTNPVGTEW_					0	0	0		ENSG00000198874|ENST00000359626|TYW1	ENSG00000198874|ENST00000359626|TYW1	ENSG00000198874|ENST00000359626|TYW1	MULTI-SECPEP	A375_MHC_IP_R2	2	521.1430053710938	2	520.743431	1039.47231	-0.68062	-0.00035443	-0.80516	-0.00041928	-1.4858	-0.00077371	520.7429335967735	39.982	0.76189	40.757	40.371	41.133	0.77451					29	14	3	0	0	0	0.048303	1	14783	14783		65.474	27.323	1	9187000			20201	9356	14521	14628	19825	19825					-0.04584877630327355
HTPALPGRLW	10	Unmodified	_HTPALPGRLW_					0	0	0		ENST00000322310.9_1_9:140084508-140084799:+|nuORF	ENST00000322310.9_1_9:140084508-140084799:+|nuORF	ENST00000322310.9_1_9:140084508-140084799:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	574.7223510742188	2	574.322183	1146.62981	-0.29516	-0.00016952	0.35329	0.0002029	0.058126	3.3383E-05	574.32230041038	65.08	0.66014	65.08	64.7	65.36	0					26	12	3	0	0	0	0.8528	1	23550	23550		16.149	2.2431	1	2961700			20202	10705	14522	14629	19826	19826					0.06236246699700132
HTPALPGRLW	10	Unmodified	_HTPALPGRLW_					0	0	0		ENST00000322310.9_1_9:140084508-140084799:+|nuORF	ENST00000322310.9_1_9:140084508-140084799:+|nuORF	ENST00000322310.9_1_9:140084508-140084799:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	574.721923828125	2	574.322183	1146.62981	-0.14193	-8.1516E-05	-0.063463	-3.6448E-05	-0.2054	-0.00011796	574.3221575122429	64.12	0.60931	64.861	64.496	65.106	0.74022					24	11	3	0	0	0	0.8528	1	24312	24312		21.537	20.055	1	1878100			20203	10705	14522	14629	19827	19827					0.06236246699700132
HTRDLQVQL	9	Unmodified	_HTRDLQVQL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF;ENST00000507771.5_1_17:48154781-48156326:+|nuORF;ITGA3|p.T726I|1|0.11|ENSG00000005884|chr17:50078083-50078083|C/T|missense_variant	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-SECPEP	A375_MHC_IP_R1	1	555.7067260742188	2	555.306729	1108.59891	-0.59886	-0.00033255	0.30217	0.0001678	-0.29669	-0.00016475	555.3068807155853	38.537	0.56285	38.537	38.319	38.882	0					25	10	3	0	0	0	0.091583	1	13070	13070		96.936	15.045	1	20534000			20204	903	14523	14630	19828	19828					0.048950485947898414
HTRDLQVQL	9	Unmodified	_HTRDLQVQL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF;ENST00000507771.5_1_17:48154781-48156326:+|nuORF;ITGA3|p.T726I|1|0.11|ENSG00000005884|chr17:50078083-50078083|C/T|missense_variant	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	A375_MHC_IP_R2	2	555.7061767578125	2	555.306729	1108.59891	-1.0554	-0.00058605	0.34061	0.00018915	-0.71476	-0.00039691	555.3069003329589	37.61	0.5631	38.383	38.122	38.686	0.77291					22	10	3	0	0	0	0.04699	1	13747	13747		65.474	6.7949	1	12214000			20205	903	14523	14630	19829	19829					0.048950485947898414
HTRDLQVQL	9	Unmodified	_HTRDLQVQL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF;ENST00000507771.5_1_17:48154781-48156326:+|nuORF;ITGA3|p.T726I|1|0.11|ENSG00000005884|chr17:50078083-50078083|C/T|missense_variant	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-SECPEP	A375_MHC_IP_R2	2	370.9403381347656	3	370.540245	1108.59891	0.069328	2.5689E-05	0.060676	2.2483E-05	0.13	4.8172E-05	370.5402534707809	37.576	0.71721	38.347	38.07	38.788	0.7709					38	13	4	0	0	0	0.46121	1	13741	13741		32.037	14.595	1	27288000			20206	903	14523	14630	19830	19830					0.048950485947898414
HTRKHIRIY	9	Unmodified	_HTRKHIRIY_					0	0	0			REV__nc|ENSG00000173875|Q3KP31-2|ZNF791	REV__nc|ENSG00000173875|Q3KP31-2|ZNF791	MULTI-SECPEP	A375_MHC_IP_R2	2	408.3067626953125	3	408.575513	1222.70471	0.034093	1.393E-05	-0.70081	-0.00028633	-0.66672	-0.00027241	408.5752781906075	131.39	0.66238	131.58	131.29	131.95	0.18953					16	12	2	0	0	0	0.81166	1	51628	51628		2.7352	0	1	3963700	+		20207	21251	14524	14631	19831	19831					0.10226429230942813
HTRSDVRLY	9	Unmodified	_HTRSDVRLY_					0	0	0		ENST00000597145.5_1_19:4685559-4714096:-|nuORF;nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9	ENST00000597145.5_1_19:4685559-4714096:-|nuORF	ENST00000597145.5_1_19:4685559-4714096:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	383.27203369140625	3	382.871995	1145.59415	0.53337	0.00020421	0.50465	0.00019322	1.038	0.00039743	382.87183811649004	21.255	0.66044	21.255	20.844	21.505	0					23	12	3	0	0	0	0.017012	1	5561	5561		80.896	50.192	1	3024500			20208	5284	14525	14632	19832	19832					0.02718164452039673
HTRSDVRLY	9	Unmodified	_HTRSDVRLY_					0	0	0		ENST00000597145.5_1_19:4685559-4714096:-|nuORF;nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9	ENST00000597145.5_1_19:4685559-4714096:-|nuORF	ENST00000597145.5_1_19:4685559-4714096:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	383.27215576171875	3	382.871995	1145.59415	-0.39405	-0.00015087	0.77942	0.00029842	0.38537	0.00014755	382.87230113697797	19.518	0.60826	20.129	19.841	20.449	0.61029					26	11	3	0	0	0	0.59927	1	6043	6043		29.437	18.638	1	2335800			20209	5284	14525	14632	19833	19833					0.02718164452039673
HTSKHGFLSW	10	Unmodified	_HTSKHGFLSW_					0	0	0		ENST00000574439.5_1_15:74472423-74490170:-|nuORF;nc|ENSG00000137868|Q9BX79-3|STRA6;ENSG00000137868|ENST00000395105|STRA6;nc|ENSG00000137868|Q9BX79-6|STRA6;nc|ENSG00000137868|Q9BX79-5|STRA6;nc|ENSG00000137868|Q9BX79-4|STRA6;chr15:74202282-74202418|298|15.96|0.4|5.33|-|ENST00000563965|STRA6,STRA6	ENST00000574439.5_1_15:74472423-74490170:-|nuORF	ENST00000574439.5_1_15:74472423-74490170:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	400.9367370605469	3	400.536724	1198.58834	-0.10767	-4.3125E-05	0.29107	0.00011658	0.1834	7.3459E-05	400.53676608656696	44.184	1.3252	44.184	43.603	44.928	0					54	25	3	0	0	0	0.69695	1	15412	15412		8.7518	1.6501	1	3624800			20210	439	14526	14633	19834	19834					-0.003009340596236143
HTSKHGFLSW	10	Unmodified	_HTSKHGFLSW_					0	0	0		ENST00000574439.5_1_15:74472423-74490170:-|nuORF;nc|ENSG00000137868|Q9BX79-3|STRA6;ENSG00000137868|ENST00000395105|STRA6;nc|ENSG00000137868|Q9BX79-6|STRA6;nc|ENSG00000137868|Q9BX79-5|STRA6;nc|ENSG00000137868|Q9BX79-4|STRA6;chr15:74202282-74202418|298|15.96|0.4|5.33|-|ENST00000563965|STRA6,STRA6	ENST00000574439.5_1_15:74472423-74490170:-|nuORF	ENST00000574439.5_1_15:74472423-74490170:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	400.9364013671875	3	400.536724	1198.58834	0.094472	3.7839E-05	-0.31013	-0.00012422	-0.21566	-8.6381E-05	400.5365401656336	43.179	1.4163	43.951	43.369	44.786	0.7724					50	27	2	0	0	0	0.60608	1	16048	16048		13.519	0	1	4104100			20211	439	14526	14633	19835	19835					-0.003009340596236143
HTTLIRSYK	9	Unmodified	_HTTLIRSYK_					0	0	0			REV__nc|ENSG00000184635|P35789-3|ZNF93	REV__nc|ENSG00000184635|P35789-3|ZNF93	MULTI-SECPEP	A375_MHC_IP_R1	1	373.2890625	3	373.548741	1117.62439	0.2567	9.5892E-05	2.6865	0.0010035	2.9432	0.0010994	373.54974360318823	24.759	0.25308	24.759	24.547	24.801	0					5	4	2	0	0	0	0.53748	1	7063	7063		12.873	7.9756	1	1086400	+		20212	21829	14527	14634	19836	19836					0.07028523117219265
HTTLSLLKRAK	11	Unmodified	_HTTLSLLKRAK_					0	0	0		ENSG00000123933|ENST00000337190|MXD4;ENST00000513372.5_1_4:2252273-2254467:-|nuORF	ENSG00000123933|ENST00000337190|MXD4	ENSG00000123933|ENST00000337190|MXD4	MSMS	A375_MHC_IP_R1	1	634.593994140625	2	634.395879	1266.7772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.81	1	142.81	142.31	143.31	0								0	0	0	0.16334	1	54795	54795		1.3295	0	1				20213	3863	14528	14635	19837	19837					0.15448718513857784
HTTVRKYRV	9	Unmodified	_HTTVRKYRV_					0	0	0			REV__ENSG00000282608|ENST00000241356|ADORA3	REV__ENSG00000282608|ENST00000241356|ADORA3	MULTI-MSMS	A375_MHC_IP_R1	1	580.7372436523438	2	580.338364	1158.66217	-0.47008	-0.0002728	-0.89561	-0.00051976	-1.3657	-0.00079256	580.3376354893494	133.79	1.0676	133.79	133.25	134.32	0					38	20	3	0	0	0	0.73415	1	51597	51597		3.9444	0.3479	1	12141000	+		20214	22993	14529	14636	19838	19838					0.0891903410267787
HTVLPYHW	8	Unmodified	_HTVLPYHW_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-MSMS	A375_MHC_IP_R2	2	527.1690673828125	2	526.769252	1051.52395	-0.86023	-0.00045314	-0.10488	-5.5248E-05	-0.96511	-0.00050839	526.7690640913113	57.136	0.4584	57.886	57.612	58.071	0.75015					17	8	3	0	0	0	0.01208	1	21602	21602		112.56	78.371	1	2959900			20215	6703	14530	14637	19839	19839					0.00024910854244808434
HTVPIYEGY	9	Unmodified	_HTVPIYEGY_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000415776.1_1_Y:19869357-19869702:-|nuORF;ENST00000415794.1_1_3:139212993-139213512:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENST00000415794.1_1_3:139212993-139213512:+|nuORF	ENSG00000075624|ENST00000646664|ACTB	MSMS	A375_MHC_IP_R2	2	539.7278442382812	2	539.763832	1077.51311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.394	1	53.147	52.647	53.647	0.75225								0	0	0	0.107	1	19748	19748		39.957	1.8061	1				20216	1615;11681	14531	14638	19840	19840					-0.022545363107155936
HTVWTFVME	9	Unmodified	_HTVWTFVME_					0	0	0			REV__ZSCAN1|p.G298E|1|0.91|ENSG00000152467|chr19:58053717-58053717|G/A|missense_variant	REV__ZSCAN1|p.G298E|1|0.91|ENSG00000152467|chr19:58053717-58053717|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	574.721923828125	2	575.273509	1148.53247	-0.12188	-7.0115E-05	3.2485	0.0018688	3.1266	0.0017987	575.7750412368807	64.043	0.25369	64.784	64.648	64.902	0.74023					5	4	2	0	0	0	0.76187	1	24312	24312		7.2892	5.9597	1	381010	+		20217	29059	14532	14639	19841	19841					-0.03585903291445902
HTWNGIRHL	9	Unmodified	_HTWNGIRHL_					0	0	0		nc|ENSG00000143252|Q99643-5|SDHC;nc|ENSG00000143252|Q99643-3|SDHC;ENSG00000143252|ENST00000367975|SDHC	nc|ENSG00000143252|Q99643-5|SDHC	nc|ENSG00000143252|Q99643-5|SDHC	MULTI-SECPEP	A375_MHC_IP_R1	1	378.9369812011719	3	378.536946	1132.58901	0.39953	0.00015124	-0.31625	-0.00011971	0.083282	3.1525E-05	378.5368250925675	28.516	0.96375	28.516	28.288	29.252	0					47	18	4	0	0	0	0.0065039	1	8788	8788		128.57	93.641	1	120200000			20218	5361	14533	14640	19842	19842					0.02801905380079006
HVADFAPEV	9	Unmodified	_HVADFAPEV_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1;ENST00000485821.1_1_1:220156057-220157598:-|nuORF	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	A375_MHC_IP_R1	1	493.14276123046875	2	492.742899	983.471246	-0.30457	-0.00015008	0.060965	3.004E-05	-0.24361	-0.00012004	492.7428870052397	57.314	0.71225	57.314	57.007	57.72	0					22	13	2	0	0	0	0.17328	2	20571	20532;20571		39.957	7.6316	1	2430900			20219	4801	14534	14641	19843;19844	19844					-0.02115091999246488
HVADFAPEV	9	Unmodified	_HVADFAPEV_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1;ENST00000485821.1_1_1:220156057-220157598:-|nuORF	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	A375_MHC_IP_R2	2	492.6634521484375	2	492.742899	983.471246	-0.87756	-0.00043241	0.17309	8.529E-05	-0.70447	-0.00034712	492.7431194959098	56.479	0.96686	57.229	56.796	57.763	0.75015					26	18	2	0	0	0	0.38603	1	21334	21334		25.399	0.72543	1	3012500			20220	4801	14534	14641	19845	19845					-0.02115091999246488
HVAGQKVI	8	Unmodified	_HVAGQKVI_					0	0	0			REV__nc|ENSG00000179057|Q8N9C0|IGSF22	REV__nc|ENSG00000179057|Q8N9C0|IGSF22	MULTI-SECPEP	A375_MHC_IP_R1	1	426.6586608886719	2	426.25852	850.502486	0.010414	4.4389E-06	0.24701	0.00010529	0.25742	0.00010973	426.2586319123181	37.275	0.30589	37.275	37.096	37.402	0					9	5	2	0	0	0	0.96296	1	12591	12591		5.7604	0.52976	1	2243000	+		20221	21540	14535	14642	19846	19846					0.07125525825506429
HVAGQKVI	8	Unmodified	_HVAGQKVI_					0	0	0			REV__nc|ENSG00000179057|Q8N9C0|IGSF22	REV__nc|ENSG00000179057|Q8N9C0|IGSF22	MULTI-MATCH	A375_MHC_IP_R2	2		2	426.25852	850.502486	-0.34109	-0.00014539	0.14912	6.3564E-05	-0.19197	-8.1828E-05	426.2585838892494	36.31	0.35623	37.081	36.901	37.258	0.7709	-0.096879	-5.161E-05	NaN	5.7604	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1840400	+		20222	21540	14535	14642							0.07125525825506429
HVAHLELQI	9	Unmodified	_HVAHLELQI_					0	0	0		nc|ENSG00000184916|Q9Y219-2|JAG2;ENSG00000184916|ENST00000331782|JAG2	nc|ENSG00000184916|Q9Y219-2|JAG2	nc|ENSG00000184916|Q9Y219-2|JAG2	MULTI-MSMS	A375_MHC_IP_R1	1	354.2815246582031	3	353.869703	1058.58728	0.10881	3.8505E-05	-0.33626	-0.00011899	-0.22745	-8.0486E-05	353.86958946809654	42.64	1.165	42.64	42.032	43.197	0					25	11	3	0	0	0	0.71977	1	14674	14674		2.9952	0.26005	1	5187200			20223	8618	14536	14643	19847	19847					0.0603285157146729
HVAKIRIPF	9	Unmodified	_HVAKIRIPF_					0	0	0			REV__ENST00000461134.1_1_20:43115184-43118179:+|nuORF	REV__ENST00000461134.1_1_20:43115184-43118179:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	360.2389831542969	3	360.894071	1079.66038	-0.38836	-0.00014016	-1.8757	-0.00067694	-2.2641	-0.0008171	360.8938166368966	39.039	0.5103	39.813	39.607	40.118	0.77451					13	9	2	0	0	0	0.80101	1	14340	14340		2.7352	0	1	737550	+		20224	18271	14537	14644	19848	19848					0.12374025084727691
HVALLLPTL	9	Unmodified	_HVALLLPTL_					0	0	0			REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	MULTI-SECPEP	A375_MHC_IP_R1	1	488.677490234375	2	488.813128	975.611703	-0.23811	-0.00011639	0.54989	0.00026879	0.31177	0.0001524	488.81321797151804	50.92	0.30459	50.92	50.764	51.068	0					8	5	2	0	0	0	0.74651	1	18100	18100		2.0598	1.6014	1	1127700	+		20225	27430	14538	14645	19849	19849					0.12292111724991628
HVDDYSDYI	9	Unmodified	_HVDDYSDYI_					0	0	0			REV__ENSG00000123610|ENST00000243347|TNFAIP6	REV__ENSG00000123610|ENST00000243347|TNFAIP6	MULTI-MSMS	A375_MHC_IP_R2	2	563.7127685546875	2	563.738011	1125.46147	-0.47384	-0.00026712	0.48223	0.00027185	0.00839	4.7298E-06	563.7381735527625	132.14	0.30563	132.33	132.2	132.51	0.18953					8	5	2	0	0	0	0.68216	1	51938	51938		8.5933	0.68312	1	1700500	+		20226	18253	14539	14646	19850	19850					-0.09624324795277062
HVDDYSDYI	9	Unmodified	_HVDDYSDYI_					0	0	0			REV__ENSG00000123610|ENST00000243347|TNFAIP6	REV__ENSG00000123610|ENST00000243347|TNFAIP6	MULTI-MATCH	A375_MHC_IP_R1	1		2	563.738011	1125.46147	-0.6695	-0.00037742	0.82294	0.00046392	0.15344	8.6501E-05	564.2402475291154	132.29	0.2009	132.29	132.18	132.38	0	-0.021117	0.00018254	NaN	8.5933	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1176700	+		20227	18253	14539	14646							-0.09624324795277062
HVDDYSDYI	9	Unmodified	_HVDDYSDYI_					0	0	0			REV__ENSG00000123610|ENST00000243347|TNFAIP6	REV__ENSG00000123610|ENST00000243347|TNFAIP6	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	563.738011	1125.46147	-0.47384	-0.00026712	0.48223	0.00027185	0.00839	4.7298E-06	563.7381735527625	132.14	0.30563	132.33	132.2	132.51	0.18953	0.021117	-0.00020161	NaN	8.5933	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1700500	+		20228	18253	14539	14646							-0.09624324795277062
HVDGFIANV	9	Unmodified	_HVDGFIANV_					0	0	0		ENSG00000170515|ENST00000303305|PA2G4;nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENST00000473864.1_1_3:156528118-156528448:-|nuORF;ENST00000414718.1_1_20:12360810-12361446:+|nuORF	ENSG00000170515|ENST00000303305|PA2G4	ENSG00000170515|ENST00000303305|PA2G4	MULTI-SECPEP	A375_MHC_IP_R1	1	486.65093994140625	2	486.250892	970.48723	-0.36399	-0.00017699	0.53967	0.00026241	0.17568	8.5426E-05	486.2512207775499	65.437	0.81598	65.437	65.156	65.972	0					32	15	3	0	0	0	0.061132	1	23679	23679		77.984	43.882	1	4943800			20229	7515	14540	14647	19851	19851					0.0008061423765184372
HVDGFIANV	9	Unmodified	_HVDGFIANV_					0	0	0		ENSG00000170515|ENST00000303305|PA2G4;nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENST00000473864.1_1_3:156528118-156528448:-|nuORF;ENST00000414718.1_1_20:12360810-12361446:+|nuORF	ENSG00000170515|ENST00000303305|PA2G4	ENSG00000170515|ENST00000303305|PA2G4	MULTI-SECPEP	A375_MHC_IP_R2	2	486.97772216796875	2	486.250892	970.48723	-0.56112	-0.00027285	1.1113	0.00054035	0.55014	0.0002675	486.2519096464961	64.568	1.12	65.308	64.8	65.92	0.74022					49	21	3	0	0	0	0.053904	1	24456	24456		74.929	42.624	1	4376100			20230	7515	14540	14647	19852	19852					0.0008061423765184372
HVDLLINKY	9	Unmodified	_HVDLLINKY_					0	0	0		nc|ENSG00000116171|P22307-4|SCP2;nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-4|SCP2	nc|ENSG00000116171|P22307-4|SCP2	MULTI-SECPEP	A375_MHC_IP_R1	1	558.2161865234375	2	557.816399	1113.61824	-0.41089	-0.0002292	-0.20123	-0.00011225	-0.61212	-0.00034145	557.8162446952515	56.223	0.96501	56.223	55.991	56.956	0					39	18	4	0	0	0	0.0085579	1	20110	20110		137.42	101.3	1	8474400			20231	3379	14541	14648	19853	19853					0.06598004885699993
HVDLLINKY	9	Unmodified	_HVDLLINKY_					0	0	0		nc|ENSG00000116171|P22307-4|SCP2;nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-4|SCP2	nc|ENSG00000116171|P22307-4|SCP2	MULTI-SECPEP	A375_MHC_IP_R2	2	558.2152099609375	2	557.816399	1113.61824	-0.84244	-0.00046992	0.018465	1.03E-05	-0.82397	-0.00045962	557.8163350688995	55.311	1.1192	56.062	55.729	56.848	0.75075					38	21	3	0	0	0	0.010874	1	20856	20856		125.53	91.127	1	8822200			20232	3379	14541	14648	19854	19854					0.06598004885699993
HVDPENFRL	9	Unmodified	_HVDPENFRL_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-SECPEP	A375_MHC_IP_R2	2	376.59283447265625	3	376.192845	1125.55671	-0.019115	-7.1907E-06	-0.1778	-6.6887E-05	-0.19691	-7.4078E-05	376.19273486801	38.886	0.61462	39.66	39.351	39.965	0.77451					28	11	3	0	0	0	0.77834	1	14288	14288		2.7352	0	1	14024000			20233	9826	14542	14649	19855	19855					-0.0010492681358300615
HVFAHRGD	8	Unmodified	_HVFAHRGD_					0	0	0		nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP;ENSG00000114650|ENST00000265565|SCAP;nc|ENSG00000114650|Q12770-3|SCAP	nc|ENSG00000114650|Q12770-4|SCAP	nc|ENSG00000114650|Q12770-4|SCAP	MSMS	A375_MHC_IP_R2	2	469.6640625	2	469.7332	937.451848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.64	1	109.38	108.88	109.88	0.74684								0	0	0	0.16876	1	41017	41017		7.2892	0.56607	1				20234	3234	14543	14650	19856	19856					-0.019380034994810558
HVFSDGVTNW	10	Unmodified	_HVFSDGVTNW_					0	0	0		ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	MULTI-MSMS	A375_MHC_IP_R1	1	581.67041015625	2	581.269813	1160.52507	-0.033666	-1.9569E-05	-0.58339	-0.00033911	-0.61705	-0.00035867	581.2697848437535	72.194	0.65736	72.194	71.968	72.625	0					23	12	2	0	0	0	0.015059	2	26283	26245;26283		88.954	48.997	1	5575800			20235	5381	14544	14651	19857;19858	19858					-0.04876919567504956
HVFSDGVTNW	10	Unmodified	_HVFSDGVTNW_					0	0	0		ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	MULTI-MSMS	A375_MHC_IP_R2	2	581.6695556640625	2	581.269813	1160.52507	-0.62948	-0.0003659	0.10387	6.0377E-05	-0.52561	-0.00030552	581.2698187290493	71.536	0.608	72.27	72.01	72.618	0.73421					25	11	3	0	0	0	0.0038543	1	27125	27125		99.799	55.941	1	4879700			20236	5381	14544	14651	19859	19859					-0.04876919567504956
HVKAGREA	8	Unmodified	_HVKAGREA_					0	0	0			REV__nc|ENSG00000084636|Q07092-2|COL16A1	REV__nc|ENSG00000084636|Q07092-2|COL16A1	MULTI-MSMS	A375_MHC_IP_R1	1	434.6432800292969	2	434.243401	866.472249	0.30626	0.00013299	-0.07701	-3.3441E-05	0.22925	9.9549E-05	434.24328233893596	114.34	3.3501	114.34	112.89	116.24	0					136	65	3	0	0	0	0.7773	1	42081	42081		4.756	2.1785	1	16259000	+		20237	16824	14545	14652	19860	19860					0.0336716716032015
HVKEKHHL	8	Unmodified	_HVKEKHHL_					0	0	0			REV__ENST00000515119.5_1_4:3517776-3534065:-|nuORF	REV__ENST00000515119.5_1_4:3517776-3534065:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	514.1717529296875	2	514.293425	1026.5723	-1.0134	-0.00052119	-1.0654	-0.00054795	-2.0788	-0.0010691	514.2925223120286	49.842	0.45947	50.596	50.294	50.753	0.75406					10	8	2	0	0	0	0.92636	1	18761	18761		16.942	9.3333	1	1273300	+		20238	20431	14546	14653	19861	19861					0.06007404494130242
HVKYFYRHWFE	11	Unmodified	_HVKYFYRHWFE_					0	0	0			REV__nc|ENSG00000160058|Q9NW68-9|BSDC1	REV__nc|ENSG00000160058|Q9NW68-9|BSDC1	MULTI-MSMS	A375_MHC_IP_R1	1	806.7968139648438	2	806.39641	1610.77827	-0.66568	-0.0005368	0.28774	0.00023203	-0.37794	-0.00030477	806.3964718800008	90.75	0.40829	90.75	90.488	90.896	0					10	7	2	0	0	0	0.73822	1	33373	33373		1.0715	0.76443	1	1550700	+		20239	20143	14547	14654	19862	19862					-0.0026906711723313492
HVKYFYRHWFE	11	Unmodified	_HVKYFYRHWFE_					0	0	0			REV__nc|ENSG00000160058|Q9NW68-9|BSDC1	REV__nc|ENSG00000160058|Q9NW68-9|BSDC1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	806.39641	1610.77827	-0.7892	-0.00063641	0.35254	0.00028429	-0.43665	-0.00035212	806.3975240037946	90.25	0.35564	90.982	90.751	91.106	0.7318	0.11598	6.1311E-05	NaN	1.0715	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1373800	+		20240	20143	14547	14654							-0.0026906711723313492
HVLDVIHEV	9	Unmodified	_HVLDVIHEV_					0	0	0		nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;ENST00000515144.5_1_5:14293150-14488426:+|nuORF;nc|ENSG00000038382|O75962-5|TRIO	nc|ENSG00000038382|O75962-2|TRIO	nc|ENSG00000038382|O75962-2|TRIO	MULTI-SECPEP	A375_MHC_IP_R1	1	531.1928100585938	2	530.792924	1059.57129	-0.62327	-0.00033083	0.0060776	3.226E-06	-0.61719	-0.0003276	530.7929135417772	64.434	0.45628	64.434	64.141	64.597	0					22	8	3	0	0	0	0.076731	1	23307	23307		88.954	24.718	1	11214000			20241	1153	14548	14655	19863	19863					0.04389145334562272
HVLSVIFYML	10	Unmodified	_HVLSVIFYML_					0	0	0			REV__ENST00000485820.1_1_11:66052175-66053099:-|nuORF	REV__ENST00000485820.1_1_11:66052175-66053099:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	408.6295471191406	3	407.89486	1220.66275	0.086698	3.5364E-05	0.32796	0.00013377	0.41466	0.00016914	407.8949989613914	108.56	1.1673	108.56	108.15	109.32	0					61	22	5	0	0	0	0.36842	1	39779	39779		23.79	18.742	1	15385000	+		20242	25314	14549	14656	19864	19864					0.061246927075444546
HVLSVIFYML	10	Unmodified	_HVLSVIFYML_					0	0	0			REV__ENST00000485820.1_1_11:66052175-66053099:-|nuORF	REV__ENST00000485820.1_1_11:66052175-66053099:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	611.7391357421875	2	611.338652	1220.66275	-0.071502	-4.3712E-05	-0.40054	-0.00024487	-0.47205	-0.00028858	611.3386353206893	108.56	1.1165	108.56	108.21	109.32	0					39	21	5	0	0	0	0.71118	1	39793	39793		7.2892	0.56607	1	5855800	+		20243	25314	14549	14656	19865	19865					0.061246927075444546
HVLSVIFYML	10	Unmodified	_HVLSVIFYML_					0	0	0			REV__ENST00000485820.1_1_11:66052175-66053099:-|nuORF	REV__ENST00000485820.1_1_11:66052175-66053099:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	408.294677734375	3	407.89486	1220.66275	-0.027175	-1.1085E-05	-0.37352	-0.00015236	-0.4007	-0.00016344	407.8947021820498	107.59	1.0216	108.34	108	109.02	0.75436					55	19	4	0	0	0	0.58828	2	40599	40599;40852		13.615	8.5673	1	12227000	+		20244	25314	14549	14656	19866;19867	19866					0.061246927075444546
HVLSVIFYML	10	Unmodified	_HVLSVIFYML_					0	0	0			REV__ENST00000485820.1_1_11:66052175-66053099:-|nuORF	REV__ENST00000485820.1_1_11:66052175-66053099:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	407.89486	1220.66275	0.086698	3.5364E-05	0.32796	0.00013377	0.41466	0.00016914	407.8949989613914	108.56	1.1673	108.56	108.15	109.32	0	0.10807	0.00041678	NaN	23.79	61	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15385000	+		20245	25314	14549	14656							0.061246927075444546
HVLSVIFYML	10	Unmodified	_HVLSVIFYML_					0	0	0			REV__ENST00000485820.1_1_11:66052175-66053099:-|nuORF	REV__ENST00000485820.1_1_11:66052175-66053099:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	407.89486	1220.66275	-0.027175	-1.1085E-05	-0.37352	-0.00015236	-0.4007	-0.00016344	407.8947021820498	107.59	1.0216	108.34	108	109.02	0.75436	-0.10807	-0.00044161	NaN	23.79	55	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12227000	+		20246	25314	14549	14656							0.061246927075444546
HVMEESLYL	9	Unmodified	_HVMEESLYL_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-SECPEP	A375_MHC_IP_R1	1	561.1507568359375	2	560.7708	1119.52705	-0.48243	-0.00027053	0.24747	0.00013877	-0.23496	-0.00013176	561.2738586732695	73.71	0.81096	73.71	73.184	73.995	0					23	15	2	0	0	0	0.3607	1	26851	26851		34.102	14.663	1	1738500			20247	2650	14550	14657	19868	19868					-0.027936268739495063
HVMEESLYL	9	Oxidation (M)	_HVM(Oxidation (M))EESLYL_		HVM(1)EESLYL		HVM(47)EESLYL	0	0	1		ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-SECPEP	A375_MHC_IP_R2	2	569.1680908203125	2	568.768257	1135.52196	-0.7056	-0.00040132	-0.15783	-8.977E-05	-0.86343	-0.00049109	568.7682999377456	57.312	0.71553	58.061	57.762	58.477	0.74894					20	13	2	0	0	0	0.28418	1	21687	21687		46.921	16.696	1	3382500			20248	2650	14550	14658	19869	19869		120			-0.04037930736558337
HVPMKWGRR	9	Unmodified	_HVPMKWGRR_					0	0	0			REV__ENST00000548758.1_1_14:36295674-36335014:+|nuORF	REV__ENST00000548758.1_1_14:36295674-36335014:+|nuORF	MSMS	A375_MHC_IP_R2	2	389.603515625	3	389.55031	1165.6291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.197	1	21.817	21.317	22.317	0.61932								0	0	0	0.15486	1	6656	6656		4.897	0.36815	1		+		20249	26017	14551	14659	19870	19870					0.05291128779003884
HVQPRTIYL	9	Unmodified	_HVQPRTIYL_					0	0	0		nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3;ENST00000411990.6_1_1:207235951-207252361:+|nuORF;nc|ENSG00000123836|O60825-2|PFKFB2;ENSG00000123836|ENST00000367080|PFKFB2	nc|ENSG00000170525|Q16875-3|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	MULTI-SECPEP	A375_MHC_IP_R1	1	376.5931396484375	3	376.217102	1125.62948	0.077393	2.9117E-05	0.12267	4.615E-05	0.20006	7.5267E-05	376.2171978262759	39.734	0.40575	39.734	39.491	39.896	0					10	7	2	0	0	0	0.77003	1	13542	13542		4.5289	0	1	1500500			20250	7518	14552	14660	19871	19871					0.0716882697984147
HVRHYLLVVS	10	Unmodified	_HVRHYLLVVS_					0	0	0			REV__nc|ENSG00000091592|Q9C000-5|NLRP1	REV__nc|ENSG00000091592|Q9C000-5|NLRP1	MSMS	A375_MHC_IP_R2	2	611.7552490234375	2	611.85639	1221.69823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.41	1	141.45	140.95	141.95	0.04216								0	0	0	0.15583	1	55311	55311		1.6526	0.17072	1		+		20251	16953	14553	14661	19872	19872					0.09624491279555514
HVRRDTRHF	9	Unmodified	_HVRRDTRHF_					0	0	0		ENST00000558813.5_1_15:48623623-48624486:+|nuORF	ENST00000558813.5_1_15:48623623-48624486:+|nuORF	ENST00000558813.5_1_15:48623623-48624486:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	408.43328857421875	3	408.555	1222.64317	-0.4572	-0.00018679	2.2219	0.00090776	1.7647	0.00072097	408.8904407319707	26.601	0.20296	26.601	26.474	26.677	0					5	3	2	0	0	0	0.80332	1	7923	7923		2.4985	1.8008	1	1474400			20252	13473	14554	14662	19873	19873					0.04075497531653127
HVRVEEQLL	9	Unmodified	_HVRVEEQLL_					0	0	0			REV__ENST00000537312.5_1_12:121615146-121618182:+|nuORF	REV__ENST00000537312.5_1_12:121615146-121618182:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	561.6822509765625	2	561.81693	1121.61931	-0.67721	-0.00038047	-0.70442	-0.00039575	-1.3816	-0.00077622	561.8166464226338	51.018	0.50507	51.772	51.462	51.968	0.75406					18	9	3	0	0	0	0.5212	1	19204	19204		32.786	14.639	1	1827100	+		20253	25921	14555	14663	19874	19874					0.06336219254626485
HVSEVPVSV	9	Unmodified	_HVSEVPVSV_					0	0	0		ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	MULTI-MSMS	A375_MHC_IP_R2	2	952.3854370117188	1	952.509822	951.502546	-0.20557	-0.00019581	4.3442	0.0041379	4.1387	0.0039421	952.5142083222783	127.85	0.20224	128.12	128.02	128.22	0.26592					5	3	2	0	0	0	0.12592	1	50209	50209		46.021	6.0636	1	1245200			20254	7217	14556	14664	19875	19875					0.024854810348642786
HVTDDFRMIDD	11	Unmodified	_HVTDDFRMIDD_					0	0	0			REV__DDX6|p.L212F|1|0.16|ENSG00000110367|chr11:118765221-118765221|G/A|missense_variant	REV__DDX6|p.L212F|1|0.16|ENSG00000110367|chr11:118765221-118765221|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	455.6067199707031	3	455.203081	1362.58741	-0.50513	-0.00022993	2.4726	0.0011255	1.9675	0.00089561	455.53739240396925	23.915	0.25341	23.915	23.687	23.94	0					5	4	2	0	0	0	0.99165	1	6568	6568		8.7518	5.4321	1	664880	+		20255	15979	14557	14665	19876	19876					-0.07937561281482886
HVVEYSSL	8	Unmodified	_HVVEYSSL_					0	0	0			REV__ENSG00000163239|ENST00000368482|TDRD10	REV__ENSG00000163239|ENST00000368482|TDRD10	MULTI-SECPEP	A375_MHC_IP_R2	2	466.6284484863281	2	467.23745	932.460347	-0.77756	-0.0003633	0.50134	0.00023425	-0.27621	-0.00012906	467.2376573502396	66.325	0.91827	67.061	66.78	67.698	0.73631					22	17	2	0	0	0	0.23624	1	25147	25147		70.716	19.86	1	1738400	+		20256	20345	14558	14666	19877	19877					-0.008584943735286288
HVVLLRDNI	9	Unmodified	_HVVLLRDNI_					0	0	0		nc|ENSG00000106078|O75128-3|COBL;ENSG00000106078|ENST00000265136|COBL;nc|ENSG00000106078|O75128-7|COBL;nc|ENSG00000106078|O75128-2|COBL;nc|ENSG00000106078|O75128-5|COBL;nc|ENSG00000106078|O75128-4|COBL	nc|ENSG00000106078|O75128-3|COBL	nc|ENSG00000106078|O75128-3|COBL	MULTI-SECPEP	A375_MHC_IP_R1	1	539.6427612304688	2	539.822015	1077.62948	-0.67895	-0.00036651	0.26825	0.00014481	-0.4107	-0.00022171	539.8221880073	60.992	0.81431	60.992	60.669	61.483	0					37	15	4	0	0	0	0.53748	1	21909	21909		13.042	9.0981	1	8183300			20257	2666	14559	14667	19878	19878					0.09376826979860198
HVVLLRDNI	9	Unmodified	_HVVLLRDNI_					0	0	0		nc|ENSG00000106078|O75128-3|COBL;ENSG00000106078|ENST00000265136|COBL;nc|ENSG00000106078|O75128-7|COBL;nc|ENSG00000106078|O75128-2|COBL;nc|ENSG00000106078|O75128-5|COBL;nc|ENSG00000106078|O75128-4|COBL	nc|ENSG00000106078|O75128-3|COBL	nc|ENSG00000106078|O75128-3|COBL	MULTI-SECPEP	A375_MHC_IP_R2	2	540.2212524414062	2	539.822015	1077.62948	-1.1896	-0.00064219	0.28859	0.00015579	-0.90105	-0.00048641	539.8221527587389	59.965	1.0159	60.712	60.45	61.466	0.74714					36	19	3	0	0	0	0.38578	1	22671	22671		27.629	0	1	8186100			20258	2666	14559	14667	19879	19879					0.09376826979860198
HVWTTLPGR	9	Unmodified	_HVWTTLPGR_					0	0	0			REV__ENST00000262622.4_1_19:34175671-34262890:+|nuORF	REV__ENST00000262622.4_1_19:34175671-34262890:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	355.4599609375	3	356.197931	1065.57196	-0.086598	-3.0846E-05	-0.29633	-0.00010555	-0.38293	-0.0001364	356.19778770699673	40.197	0.56076	40.197	39.794	40.355	0					21	10	3	0	0	0	0.80005	1	13788	13788		2.7352	0.30041	1	1170900	+		20259	23210	14560	14668	19880	19880					0.04179984774282275
HWDTDPSVLQL	11	Unmodified	_HWDTDPSVLQL_					0	0	0		nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2	nc|ENSG00000077380|Q13409-2|DYNC1I2	nc|ENSG00000077380|Q13409-2|DYNC1I2	MULTI-MSMS	A375_MHC_IP_R1	1	437.6370544433594	3	437.550698	1309.63027	-0.46395	-0.000203	-0.23534	-0.00010297	-0.69929	-0.00030597	437.550592559195	26.601	0.50445	26.601	26.423	26.928	0					18	9	3	0	0	0	0.72909	1	8021	8021		9.7643	3.5299	1	3105100			20260	1654	14561	14669	19881	19881					-0.012164231617589394
HWECPCCYEY	10	Unmodified	_HWECPCCYEY_					0	0	0			REV__ENSG00000178295|ENST00000381254|GEN1	REV__ENSG00000178295|ENST00000381254|GEN1	MULTI-SECPEP	A375_MHC_IP_R2	2	667.1263427734375	2	666.727751	1331.44095	-1.1685	-0.00077907	0.26694	0.00017798	-0.90155	-0.00060109	666.7277225804675	57.342	0.81641	58.091	57.661	58.477	0.74894					23	15	2	0	0	0	0.91556	1	21667	21667		14.838	8.6325	1	5249700	+		20261	21501	14562	14670	19882	19882					-0.2115127804261192
HWFTRMFAF	9	Unmodified	_HWFTRMFAF_					0	0	0		nc|ENSG00000290184|Q9BZS1-2|FOXP3;nc|ENSG00000290184|Q9BZS1-4|FOXP3;ENSG00000049768|ENST00000376207|FOXP3;nc|ENSG00000290184|Q9BZS1-3|FOXP3	nc|ENSG00000290184|Q9BZS1-2|FOXP3	nc|ENSG00000290184|Q9BZS1-2|FOXP3	MULTI-SECPEP	A375_MHC_IP_R1	1	622.075439453125	2	621.797486	1241.58042	-0.67602	-0.00042035	-4.1682	-0.0025918	-4.8442	-0.0030121	621.7951761352462	90.583	0.30502	90.583	90.387	90.692	0					10	5	3	0	0	0	0.75164	1	33241	33241		13.906	8.6092	1	757490			20262	1223	14563	14671	19883	19883					-0.030707845807683043
HWKCASLLEWQ	11	Unmodified	_HWKCASLLEWQ_					0	0	0		ENSG00000178187|ENST00000519564|ZNF454	ENSG00000178187|ENST00000519564|ZNF454	ENSG00000178187|ENST00000519564|ZNF454	MSMS	A375_MHC_IP_R1	1	467.6429443359375	3	467.564173	1399.67069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.227	1	28.227	27.727	28.727	0								0	0	0	0.16253	1	8681	8681		5.5233	0.47577	1				20263	8141	14564	14672	19884	19884					-0.013157800429780764
HWKQKLLKYHR	11	Unmodified	_HWKQKLLKYHR_					0	0	0			REV__ENST00000332707.9_1_12:64815105-64815165:+|nuORF	REV__ENST00000332707.9_1_12:64815105-64815165:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	513.054443359375	3	512.968522	1535.88374	-0.56536	-0.00029001	-0.099306	-5.0941E-05	-0.66467	-0.00034095	512.9685292256369	149.1	0.50415	149.12	148.95	149.46	0.018707					13	9	2	0	0	0	1.0015	1	57924	57924		0.094841	0.094841	1	121270	+		20264	23640	14565	14673	19885	19885					0.13722893799013036
HWLKFLHARVY	11	Unmodified	_HWLKFLHARVY_					0	0	0			REV__ENST00000578846.5_1_17:80019083-80019302:-|nuORF	REV__ENST00000578846.5_1_17:80019083-80019302:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	491.0309753417969	3	490.610334	1468.80917	-0.35127	-0.00017234	0.40682	0.00019959	0.05555	2.7253E-05	490.61056621100903	148.93	0.99689	148.95	148.56	149.56	0.018692					31	20	2	0	0	0	1.0015	1	57721	57721		0.094841	0	1	92851	+		20265	20941	14566	14674	19886	19886					0.09352130987645069
HWLRIRRRALY	11	Unmodified	_HWLRIRRRALY_					0	0	0			REV__nc|ENSG00000130518|Q9H0B3-5|IQCN	REV__nc|ENSG00000130518|Q9H0B3-5|IQCN	MSMS	A375_MHC_IP_R1	1	770.6730346679688	2	770.46021	1538.90587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.49	1	118.49	117.99	118.99	0								0	0	0	0.16331	1	43642	43642		1.4819	0.15237	1		+		20266	18546	14567	14675	19887	19887					0.15797118267437327
HWLRLTVLK	9	Unmodified	_HWLRLTVLK_					0	0	0			REV__ENSG00000171017|ENST00000306708|LRRC8E	REV__ENSG00000171017|ENST00000306708|LRRC8E	MSMS	A375_MHC_IP_R2	2	583.7634887695312	2	583.36385	1164.71315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.835	1	12.333	11.833	12.833	0.49811								0	0	0	0.15486	1	3664	3664		0	0	1		+		20267	21037	14568	14676	19888	19888					0.13737983147507293
HWLRSLRMP	9	Unmodified	_HWLRSLRMP_					0	0	0			REV__ENST00000395648.7_2_11:44954150-44954441:-|nuORF	REV__ENST00000395648.7_2_11:44954150-44954441:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	398.9642333984375	3	399.222082	1194.64442	-0.28324	-0.00011307	-3.4954	-0.0013954	-3.7787	-0.0015085	399.5559330399929	41.247	0.50602	42.022	41.743	42.249	0.77451					14	9	2	0	0	0	0.73363	1	15252	15252		7.1017	0	1	1197600	+		20268	24326	14569	14677	19889	19889					0.05487995576186222
HWPWMNLFFKI	11	Unmodified	_HWPWMNLFFKI_					0	0	0		ENSG00000006788|ENST00000252172|MYH13	ENSG00000006788|ENST00000252172|MYH13	ENSG00000006788|ENST00000252172|MYH13	MULTI-MSMS	A375_MHC_IP_R1	1	507.3289489746094	3	506.928676	1517.7642	-0.51862	-0.0002629	0.5801	0.00029407	0.061478	3.1165E-05	506.92918528544914	27.561	2.0226	27.561	27.229	29.252	0					107	39	5	0	0	0	0.73807	1	8586	8586		1.2148	0.10508	1	33459000			20269	932	14570	14678	19890	19890					0.026025641300520874
HWRQWNRIFRW	11	Unmodified	_HWRQWNRIFRW_					0	0	0		ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	MSMS	A375_MHC_IP_R1	1	842.9243774414062	2	842.939642	1683.86473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.23	1	124.23	123.73	124.73	0								0	0	0	0.16334	1	46692	46692		1.3295	1.0225	1				20270	1734	14571	14679	19891	19891					0.050153572279441505
HWRRRNRKVNH	11	Unmodified	_HWRRRNRKVNH_					0	0	0		ENST00000444129.6_1_12:21654187-21654346:-|nuORF;ENST00000539672.1_3_12:21654187-21654499:-|nuORF	ENST00000444129.6_1_12:21654187-21654346:-|nuORF	ENST00000444129.6_1_12:21654187-21654346:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	520.6948852539062	3	520.294402	1557.86138	-0.0099368	-5.1701E-06	0.64827	0.00033729	0.63833	0.00033212	520.2946791701258	45.073	0.30552	45.073	44.928	45.234	0					16	5	4	0	0	0	0.73881	1	15768	15768		0.50596	0	1	1856400			20271	12012	14572	14680	19892	19892					0.104761071739631
HWRRRNRKVNH	11	Unmodified	_HWRRRNRKVNH_					0	0	0		ENST00000444129.6_1_12:21654187-21654346:-|nuORF;ENST00000539672.1_3_12:21654187-21654499:-|nuORF	ENST00000444129.6_1_12:21654187-21654346:-|nuORF	ENST00000444129.6_1_12:21654187-21654346:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	390.87298583984375	4	390.472621	1557.86138	0.65606	0.00025617	0.55243	0.00021571	1.2085	0.00047188	390.47275604503585	45.107	0.55614	45.107	44.878	45.434	0					20	10	3	0	0	0	1.0015	1	15754	15754		0.094841	0	1	8796000			20272	12012	14572	14680	19893	19893					0.104761071739631
HWWRFLVIWIL	11	Unmodified	_HWWRFLVIWIL_					0	0	0		ENST00000526903.1_1_11:71671811-71693962:+|nuORF;ENST00000528683.5_1_11:71640101-71701796:+|nuORF;nc|ENSG00000137522|Q9H920-2|RNF121;ENST00000526549.5_1_11:71673326-71707358:+|nuORF;ENSG00000137522|ENST00000361756|RNF121	ENST00000526903.1_1_11:71671811-71693962:+|nuORF	ENST00000526903.1_1_11:71671811-71693962:+|nuORF	MSMS	A375_MHC_IP_R2	2	523.6993408203125	3	523.63448	1567.88161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.072	1	93.811	93.311	94.311	0.73902								0	0	0	0.16331	1	35387	35387		0.50596	0	1				20273	4894	14573	14681	19894	19894					0.12038465061209536
HWWRFLVIWIL	11	Unmodified	_HWWRFLVIWIL_					0	0	0		ENST00000526903.1_1_11:71671811-71693962:+|nuORF;ENST00000528683.5_1_11:71640101-71701796:+|nuORF;nc|ENSG00000137522|Q9H920-2|RNF121;ENST00000526549.5_1_11:71673326-71707358:+|nuORF;ENSG00000137522|ENST00000361756|RNF121	ENST00000526903.1_1_11:71671811-71693962:+|nuORF	ENST00000526903.1_1_11:71671811-71693962:+|nuORF	MSMS	A375_MHC_IP_R2	2	523.6636962890625	3	523.63448	1567.88161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.109	1	93.848	93.348	94.348	0.73902								0	0	0	0.16331	1	35401	35401		0.50596	0.09769	1				20274	4894	14573	14681	19895	19895					0.12038465061209536
HWWWKLHFVWE	11	Unmodified	_HWWWKLHFVWE_					0	0	0		ENSG00000168282|ENST00000305386|MGAT2	ENSG00000168282|ENST00000305386|MGAT2	ENSG00000168282|ENST00000305386|MGAT2	MULTI-SECPEP	A375_MHC_IP_R1	1	826.9202270507812	2	827.409321	1652.80409	-0.45344	-0.00037518	0.68345	0.00056549	0.23001	0.00019031	827.4099925826143	89.905	0.6064	89.905	89.628	90.235	0					33	11	4	0	0	0	1.0014	1	33064	33064		0.30703	0.30703	1	17576000			20275	7283	14574	14682	19896	19896					0.0037982712501616334
HYDRRRLDMAQ	11	Unmodified	_HYDRRRLDMAQ_					0	0	0			REV__nc|ENSG00000225697|Q9BXS9-2|SLC26A6	REV__nc|ENSG00000225697|Q9BXS9-2|SLC26A6	MSMS	A375_MHC_IP_R1	1	487.6747131347656	3	487.577365	1459.71026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.893	1	28.893	28.393	29.393	0								0	0	0	0.16291	1	8970	8970		3.5927	1.1579	1		+		20276	22717	14575	14683	19897	19897					-0.0012026003955725173
HYELFQEDEYY	11	Unmodified	_HYELFQEDEYY_					0	0	0			REV__ENST00000432735.5_1_21:47661679-47661916:+|nuORF	REV__ENST00000432735.5_1_21:47661679-47661916:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	768.7188110351562	2	768.319896	1534.62524	-0.37292	-0.00028652	-0.52539	-0.00040367	-0.89831	-0.00069019	768.3193986271532	50.016	0.61408	50.016	49.743	50.357	0					29	11	4	0	0	0	0.66658	1	17687	17687		18.146	14.865	1	5529500	+		20277	24720	14576	14684	19898	19898					-0.12068771815029322
HYELFQEDEYY	11	Unmodified	_HYELFQEDEYY_					0	0	0			REV__ENST00000432735.5_1_21:47661679-47661916:+|nuORF	REV__ENST00000432735.5_1_21:47661679-47661916:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	768.7191162109375	2	768.319896	1534.62524	-1.2135	-0.00093239	0.039666	3.0476E-05	-1.1739	-0.00090192	768.3199863230016	49.499	0.6578	50.257	49.944	50.602	0.75737					29	12	3	0	0	0	0.54446	1	18593	18593		27.629	21.897	1	7273600	+		20278	24720	14576	14684	19899	19899					-0.12068771815029322
HYELFQEDEYY	11	Unmodified	_HYELFQEDEYY_					0	0	0			REV__ENST00000432735.5_1_21:47661679-47661916:+|nuORF	REV__ENST00000432735.5_1_21:47661679-47661916:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	768.319896	1534.62524	-0.37292	-0.00028652	-0.52539	-0.00040367	-0.89831	-0.00069019	768.3193986271532	50.016	0.61408	50.016	49.743	50.357	0	-0.12059	-0.00040675	NaN	27.629	29	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5529500	+		20279	24720	14576	14684							-0.12068771815029322
HYELFQEDEYY	11	Unmodified	_HYELFQEDEYY_					0	0	0			REV__ENST00000432735.5_1_21:47661679-47661916:+|nuORF	REV__ENST00000432735.5_1_21:47661679-47661916:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	768.319896	1534.62524	-1.2135	-0.00093239	0.039666	3.0476E-05	-1.1739	-0.00090192	768.3199863230016	49.499	0.6578	50.257	49.944	50.602	0.75737	0.12059	0.00046155	NaN	27.629	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7273600	+		20280	24720	14576	14684							-0.12068771815029322
HYIKKLMVRRW	11	Unmodified	_HYIKKLMVRRW_					0	0	0			REV__GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	REV__GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	765.5101318359375	2	765.447923	1528.88129	-0.76081	-0.00058236	-0.031975	-2.4475E-05	-0.79279	-0.00060684	765.4476950415975	134.45	3.8796	134.45	134.07	137.95	0					221	75	6	0	0	0	0.73925	1	52360	52360		0.30703	0.30703	1	131910000	+		20281	26701	14577	14685	19900	19900					0.13800722069709082
HYKKRVREHRE	11	Unmodified	_HYKKRVREHRE_					0	0	0			REV__ENST00000505081.5_1_5:176942650-176942839:-|nuORF	REV__ENST00000505081.5_1_5:176942650-176942839:-|nuORF	MSMS	A375_MHC_IP_R1	1	769.4913940429688	2	769.426565	1536.83858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.52	1	123.52	123.02	124.02	0								0	0	0	0.16302	1	46168	46168		2.9952	0	1		+		20282	21744	14578	14686	19901	19901					0.09163043265812121
HYKLVPQQLAH	11	Unmodified	_HYKLVPQQLAH_					0	0	0		ENSG00000135940|ENST00000258424|COX5B	ENSG00000135940|ENST00000258424|COX5B	ENSG00000135940|ENST00000258424|COX5B	MULTI-MSMS	A375_MHC_IP_R1	1	445.6502380371094	3	445.250695	1332.73025	0.12802	5.6999E-05	-0.32943	-0.00014668	-0.20142	-8.9682E-05	445.25061192415666	35.497	0.81501	35.497	35.218	36.033	0					30	15	3	0	0	0	0.61954	1	11803	11803		21.799	17.393	1	6252600			20283	4731	14579	14687	19902	19902					0.0771985896269598
HYKLVPQQLAH	11	Unmodified	_HYKLVPQQLAH_					0	0	0		ENSG00000135940|ENST00000258424|COX5B	ENSG00000135940|ENST00000258424|COX5B	ENSG00000135940|ENST00000258424|COX5B	MULTI-MSMS	A375_MHC_IP_R2	2	445.650634765625	3	445.250695	1332.73025	-0.60179	-0.00026795	1.1771	0.0005241	0.5753	0.00025615	445.58490379300156	34.415	1.1157	35.168	34.853	35.969	0.75225					33	21	3	0	0	0	0.49349	1	12464	12464		31.636	22.392	1	5305600			20284	4731	14579	14687	19903	19903					0.0771985896269598
HYPIRISKR	9	Unmodified	_HYPIRISKR_					0	0	0		ENSG00000203663|ENST00000641771|OR2L2	ENSG00000203663|ENST00000641771|OR2L2	ENSG00000203663|ENST00000641771|OR2L2	MSMS	A375_MHC_IP_R1	1	390.6346740722656	3	390.568247	1168.68291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.22	1	102.22	101.72	102.72	0								0	0	0	0.15486	1	37564	37564		1.9064	0.31409	1				20285	9390	14580	14688	19904	19904					0.10531624482359803
HYPIRISKR	9	Unmodified	_HYPIRISKR_					0	0	0		ENSG00000203663|ENST00000641771|OR2L2	ENSG00000203663|ENST00000641771|OR2L2	ENSG00000203663|ENST00000641771|OR2L2	MSMS	A375_MHC_IP_R2	2	390.6170959472656	3	390.568247	1168.68291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.72	1	99.48	98.98	99.98	0.75977								0	0	0	0.15486	1	37449	37449		2.2828	1.0894	1				20286	9390	14580	14688	19905	19905					0.10531624482359803
HYQYLQWDQPF	11	Unmodified	_HYQYLQWDQPF_					0	0	0			REV__ENSG00000134627|ENST00000299001|PIWIL4	REV__ENSG00000134627|ENST00000299001|PIWIL4	MULTI-SECPEP	A375_MHC_IP_R1	1	763.2681884765625	2	762.848958	1523.68336	-0.24024	-0.00018326	-1.0538	-0.00080391	-1.2941	-0.00098717	763.3495737491587	108	0.55837	108	107.7	108.26	0					14	10	2	0	0	0	0.99331	1	39576	39576		8.7454	0.58988	1	3999100	+		20287	18791	14581	14689	19906	19906					-0.05753045379128707
HYRNLQKY	8	Unmodified	_HYRNLQKY_					0	0	0		ENSG00000203867|ENST00000369519|RBM20	ENSG00000203867|ENST00000369519|RBM20	ENSG00000203867|ENST00000369519|RBM20	MSMS	A375_MHC_IP_R1	1	374.43341064453125	3	374.533202	1120.57778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.943	1	40.943	40.443	41.443	0								0	0	0	0.16876	1	14106	14106		6.7232	2.5337	1				20288	9399	14582	14690	19907	19907					0.022310832859375296
HYRTLEYLLR	10	Unmodified	_HYRTLEYLLR_					0	0	0		nc|ENSG00000004777|O14559-11|ARHGAP33;ENSG00000004777|ENST00000007510|ARHGAP33;nc|ENSG00000004777|O14559-10|ARHGAP33;ENST00000586918.1_1_19:36273531-36273772:+|nuORF	nc|ENSG00000004777|O14559-11|ARHGAP33	nc|ENSG00000004777|O14559-11|ARHGAP33	MSMS	A375_MHC_IP_R2	2	682.4436645507812	2	682.377686	1362.74082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.3858	1	9.8328	9.3328	10.333	0.44698								0	0	0	0.15629	1	2928	2928		0.40072	0	1				20289	870	14583	14691	19908	19908					0.07395841617130827
HYYERDPKRIY	11	Unmodified	_HYYERDPKRIY_					0	0	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MSMS	A375_MHC_IP_R2	2	770.26806640625	2	770.388782	1538.76301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.37	1	106.13	105.63	106.63	0.76308								0	0	0	0.16331	1	39855	39855		1.4819	0	1				20290	2241	14584	14692	19909	19909					0.015180212948962435
HYYVSYRRNAF	11	Unmodified	_HYYVSYRRNAF_					0	0	0		nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1;nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1	nc|ENSG00000108018|Q8WY21-4|SORCS1	nc|ENSG00000108018|Q8WY21-4|SORCS1	MSMS	A375_MHC_IP_R2	2	492.47735595703125	3	492.57747	1474.71058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.663	1	46.428	45.928	46.928	0.76519								0	0	0	0.16331	1	17077	17077		0.50596	0	1				20291	2778	14585	14693	19910	19910					-0.007785170480474335
IAAEPRHCL	9	Carbamidomethyl (C)	_IAAEPRHC(Carbamidomethyl (C))L_	IAAEPRHC(1)L		IAAEPRHC(44)L		0	1	0		ENST00000377503.6_1_5:159680387-159681146:-|nuORF;ENSG00000135083|ENST00000257536|CCNJL;nc|ENSG00000135083|Q8IV13|CCNJL	ENST00000377503.6_1_5:159680387-159681146:-|nuORF	ENST00000377503.6_1_5:159680387-159681146:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	356.5867614746094	3	356.186926	1065.53895	-0.0077896	-2.7745E-06	-0.31808	-0.0001133	-0.32587	-0.00011607	356.18679646048594	23.202	0.40436	23.202	22.873	23.278	0					12	7	2	0	0	0	0.13728	1	6315	6315		43.982	27.833	1	17886000			20292	4642	14586	14694	19911	19911	30				0.008800346599173281
IAANEENRKW	10	Unmodified	_IAANEENRKW_					0	0	0		ENST00000481106.5_1_X:80458072-80552723:+|nuORF;ENSG00000131171|ENST00000373212|SH3BGRL;ENST00000474113.1_1_X:80511064-80552723:+|nuORF	ENST00000481106.5_1_X:80458072-80552723:+|nuORF	ENST00000481106.5_1_X:80458072-80552723:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	411.6223449707031	3	410.879038	1229.61528	0.16479	6.7707E-05	0.19985	8.2115E-05	0.36464	0.00014982	410.8791767802611	23.089	0.65482	23.089	22.572	23.227	0					23	12	3	0	0	0	0.30731	1	6290	6290		62.869	24.31	1	8160300			20293	4314	14587	14695	19912	19912					0.009661297608772657
IAANEENRKW	10	Unmodified	_IAANEENRKW_					0	0	0		ENST00000481106.5_1_X:80458072-80552723:+|nuORF;ENSG00000131171|ENST00000373212|SH3BGRL;ENST00000474113.1_1_X:80511064-80552723:+|nuORF	ENST00000481106.5_1_X:80458072-80552723:+|nuORF	ENST00000481106.5_1_X:80458072-80552723:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	411.279052734375	3	410.879038	1229.61528	-0.31425	-0.00012912	0.13113	5.3877E-05	-0.18312	-7.524E-05	410.87895360276696	20.357	0.96517	20.968	20.651	21.616	0.6103					43	18	3	0	0	0	0.21149	1	6349	6349		48.073	35.2	1	1855300			20294	4314	14587	14695	19913	19913					0.009661297608772657
IAANLTDEG	9	Unmodified	_IAANLTDEG_					0	0	0			REV__ENST00000587908.1_1_19:56831578-56832375:-|nuORF	REV__ENST00000587908.1_1_19:56831578-56832375:-|nuORF	MSMS	A375_MHC_IP_R2	2	452.168701171875	2	452.224539	902.434526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.939	1	32.676	32.176	33.176	0.73691								0	0	0	0.15069	1	11323	11323		20.454	0	1		+		20295	26405	14588	14696	19914	19914					-0.020593886158053465
IAAPDSRRW	9	Unmodified	_IAAPDSRRW_					0	0	0		ENST00000464954.1_1_1:167691199-167735064:+|nuORF;nc|ENSG00000197965|O95297-5|MPZL1;MPZL1|p.N124Kfs*32|1|0.16|ENSG00000197965|chr1:167772388-167772388|T/-|frameshift_variant;nc|ENSG00000197965|O95297-3|MPZL1;ENST00000465787.5_1_1:167691238-167742606:+|nuORF;nc|ENSG00000197965|O95297-2|MPZL1;ENSG00000197965|ENST00000359523|MPZL1	ENST00000464954.1_1_1:167691199-167735064:+|nuORF	ENST00000464954.1_1_1:167691199-167735064:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	358.2609558105469	3	357.861319	1070.56213	-0.35763	-0.00012798	0.093154	3.3336E-05	-0.26448	-9.4647E-05	357.8611842845516	29.587	0.54582	29.587	29.302	29.848	0					24	10	4	0	0	0	0.074562	2	9292	9292;9400		55.235	23.599	1	54293000			20296	12233	14589	14697	19915;19916	19915					0.029667967688737917
IAAPDSRRW	9	Unmodified	_IAAPDSRRW_					0	0	0		ENST00000464954.1_1_1:167691199-167735064:+|nuORF;nc|ENSG00000197965|O95297-5|MPZL1;MPZL1|p.N124Kfs*32|1|0.16|ENSG00000197965|chr1:167772388-167772388|T/-|frameshift_variant;nc|ENSG00000197965|O95297-3|MPZL1;ENST00000465787.5_1_1:167691238-167742606:+|nuORF;nc|ENSG00000197965|O95297-2|MPZL1;ENSG00000197965|ENST00000359523|MPZL1	ENST00000464954.1_1_1:167691199-167735064:+|nuORF	ENST00000464954.1_1_1:167691199-167735064:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	357.96319580078125	3	357.861319	1070.56213	-0.95621	-0.00034219	-0.06747	-2.4145E-05	-1.0237	-0.00036633	357.86122946940657	28.86	0.64799	29.559	29.384	30.032	0.69872					19	12	2	0	0	0	0.46357	1	10084	10084		21.59	21.59	1	48168000			20297	12233	14589	14697	19917	19917					0.029667967688737917
IAAQFSDNL	9	Unmodified	_IAAQFSDNL_					0	0	0		ENSG00000151148|ENST00000342494|UBE3B;nc|ENSG00000151148|Q7Z3V4-2|UBE3B	ENSG00000151148|ENST00000342494|UBE3B	ENSG00000151148|ENST00000342494|UBE3B	MSMS	A375_MHC_IP_R1	1	489.6455383300781	2	489.748182	977.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.106	1	70.106	69.606	70.606	0								0	0	0	0.15283	1	25449	25449		16.942	2.104	1				20298	5882	14590	14698	19918	19918					-0.007831093448203319
IAAQRTINW	9	Unmodified	_IAAQRTINW_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1990966796875	2	536.79854	1071.58253	-0.53446	-0.0002869	1.1336	0.0006085	0.59912	0.0003216	536.7994110035469	51.654	0.50702	51.654	51.322	51.829	0					21	9	3	0	0	0	0.0575	1	18335	18335		86.332	44.492	1	6583400			20299	4093	14591	14699	19919	19919					0.04959967428703749
IAAQRTINW	9	Unmodified	_IAAQRTINW_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1983642578125	2	536.79854	1071.58253	-0.96811	-0.00051968	0.14699	7.8905E-05	-0.82112	-0.00044078	536.798594635711	50.851	0.45356	51.605	51.412	51.866	0.75406					16	8	2	0	0	0	0.019499	1	19125	19125		103.42	74.338	1	6148600			20300	4093	14591	14699	19920	19920					0.04959967428703749
IAAQTGTRW	9	Unmodified	_IAAQTGTRW_					0	0	0		ENST00000589372.1_1_19:9939013-9939570:+|nuORF;ENSG00000198258|ENST00000586895|UBL5;ENST00000588595.5_1_19:9939136-9939352:+|nuORF;ENST00000588141.1_1_19:9939136-9939570:+|nuORF	ENST00000589372.1_1_19:9939013-9939570:+|nuORF	ENST00000589372.1_1_19:9939013-9939570:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.6693115234375	2	502.269616	1002.52468	-0.31344	-0.00015743	-0.034479	-1.7318E-05	-0.34792	-0.00017475	502.2695794326295	33.728	0.60645	33.728	33.547	34.154	0					23	11	3	0	0	0	0.028087	1	11043	11043		106.94	35.807	1	13179000			20301	9247	14592	14700	19921	19921					0.02351705503269841
IAAQTGTRW	9	Unmodified	_IAAQTGTRW_					0	0	0		ENST00000589372.1_1_19:9939013-9939570:+|nuORF;ENSG00000198258|ENST00000586895|UBL5;ENST00000588595.5_1_19:9939136-9939352:+|nuORF;ENST00000588141.1_1_19:9939136-9939570:+|nuORF	ENST00000589372.1_1_19:9939013-9939570:+|nuORF	ENST00000589372.1_1_19:9939013-9939570:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	502.1298828125	2	502.269616	1002.52468	-0.72743	-0.00036536	-0.2142	-0.00010759	-0.94162	-0.00047295	502.2694109566458	33.015	0.50921	33.753	33.52	34.029	0.73803					23	9	3	0	0	0	0.03109	1	11768	11768		103.35	32.22	1	14840000			20302	9247	14592	14700	19922	19922					0.02351705503269841
IAASGLALSGS	11	Unmodified	_IAASGLALSGS_					0	0	0			REV__nc|ENSG00000171456|Q8IXJ9-2|ASXL1	REV__nc|ENSG00000171456|Q8IXJ9-2|ASXL1	MULTI-MSMS	A375_MHC_IP_R2	2	473.6607971191406	2	473.763832	945.513111	-0.68966	-0.00032674	-1.8296	-0.00086679	-2.5192	-0.0011935	473.76295212684096	51.188	0.25475	51.94	51.763	52.017	0.75225					7	4	2	0	0	0	0.65228	1	19274	19274		19.257	1.1106	1	1050200	+		20303	21066	14593	14701	19923	19923					0.038174636892904346
IADDPSSSY	9	Unmodified	_IADDPSSSY_					0	0	0			REV__CPE|p.E268K|1|0.25|ENSG00000109472|chr4:165484433-165484433|G/A|missense_variant	REV__CPE|p.E268K|1|0.25|ENSG00000109472|chr4:165484433-165484433|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	477.674072265625	2	477.70618	953.397806	-0.63553	-0.00030359	0.17817	8.5113E-05	-0.45736	-0.00021848	477.70622731459946	39.549	0.40396	39.549	39.34	39.744	0					11	7	2	0	0	0	0.68216	1	13471	13471		8.5933	2.2392	1	4290400	+		20304	15907	14594	14702	19924	19924					-0.08075685232370233
IADERMSNK	9	Unmodified	_IADERMSNK_					0	0	0			REV__ENST00000429490.5_1_10:52066829-52066889:-|nuORF	REV__ENST00000429490.5_1_10:52066829-52066889:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	532.6629638671875	2	532.263673	1062.51279	-0.72955	-0.00038832	0.025064	1.334E-05	-0.70449	-0.00037498	532.2637366947133	27.306	1.008	27.306	26.828	27.836	0					27	19	2	0	0	0	0.49205	1	8269	8269		27.629	0	1	6116700	+		20305	24689	14595	14703	19925	19925					-0.015962793022254118
IADGANTHGKG	11	Unmodified	_IADGANTHGKG_					0	0	0			REV__nc|ENSG00000152061|Q5R372-2|RABGAP1L	REV__nc|ENSG00000152061|Q5R372-2|RABGAP1L	MULTI-SECPEP	A375_MHC_IP_R2	2	519.98583984375	2	520.759612	1039.50467	-0.59585	-0.00031029	0.39255	0.00020443	-0.20329	-0.00010587	520.7600086447188	73.195	0.86809	73.93	73.785	74.653	0.73541					22	16	2	0	0	0	0.9754	1	27896	27896		17.113	3.605	1	1404300	+		20306	27290	14596	14704	19926	19926					-0.013500902273335669
IADLSAPVE	9	Unmodified	_IADLSAPVE_					0	0	0		ENST00000380671.6_2_21:40800238-40800343:-|nuORF	ENST00000380671.6_2_21:40800238-40800343:-|nuORF	ENST00000380671.6_2_21:40800238-40800343:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	457.6534729003906	2	457.745108	913.475663	-0.19521	-8.9357E-05	0.3014	0.00013796	0.10619	4.8607E-05	457.7451119214171	98.837	0.50603	99.597	99.403	99.909	0.75977					15	9	2	0	0	0	0.067501	1	37489	37489		57.471	2.6978	1	2091200			20307	11356	14597	14705	19927	19927					0.015463724236610688
IADMGHLKY	9	Unmodified	_IADMGHLKY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6678466796875	2	524.268227	1046.5219	-0.72176	-0.0003784	0.30525	0.00016003	-0.41652	-0.00021837	524.2682530171741	39.667	0.75999	39.667	39.391	40.151	0					36	14	4	0	0	0	0.008833	1	13560	13560		134.3	45.392	1	45063000			20308	4431	14598	14706	19928	19928					0.000501140541246059
IADMGHLKY	9	Unmodified	_IADMGHLKY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	A375_MHC_IP_R2	2	525.1693725585938	2	524.268227	1046.5219	-0.77332	-0.00040543	-0.17107	-8.9684E-05	-0.94439	-0.00049511	524.2680931503749	38.858	0.86863	39.633	39.351	40.219	0.77451					40	16	4	0	0	0	0.06083	1	14300	14300		60.074	22.1	1	44173000			20309	4431	14598	14706	19929	19929					0.000501140541246059
IADMGHLKY	9	Oxidation (M)	_IADM(Oxidation (M))GHLKY_		IADM(1)GHLKY		IADM(56)GHLKY	0	0	1		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	A375_MHC_IP_R2	2	532.6988525390625	2	532.265684	1062.51682	-1.0911	-0.00058078	-0.59684	-0.00031768	-1.688	-0.00089845	532.2656005235283	24.844	0.81414	25.487	25.11	25.924	0.64368					48	15	4	0	0	0	0.073067	2	8325	8132;8325		55.503	32.766	1	25178000			20310	4431	14598	14707	19930;19931	19931		231			-0.011941898085069624
IADVVLEY	8	Unmodified	_IADVVLEY_					0	0	0			REV__ENST00000512891.1_1_5:177593058-177593307:+|nuORF	REV__ENST00000512891.1_1_5:177593058-177593307:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	461.0825500488281	2	461.250026	920.485499	-0.23978	-0.0001106	1.2139	0.0005599	0.97408	0.0004493	461.24934768740604	64.015	0.8131	64.015	63.58	64.393	0					27	15	3	0	0	0	0.972	1	23227	23227		10.183	0	1	1597400	+		20311	20357	14599	14708	19932	19932					0.02207560429053501
IADVVLLQKL	10	Unmodified	_IADVVLLQKL_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	A375_MHC_IP_R2	2	371.92938232421875	3	371.241025	1110.70125	-0.30714	-0.00011402	0.98017	0.00036388	0.67304	0.00024986	371.57636791519224	28.902	2.6698	29.6	28.777	31.447	0.69872					185	52	5	0	0	0	0.66857	1	10209	10209		15.739	0	1	149720000			20312	2058	14600	14709	19933	19933					0.15032321613716704
IAEALSKMKL	10	Unmodified	_IAEALSKMKL_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MSMS	A375_MHC_IP_R1	1	368.62188720703125	3	368.554615	1102.64202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.242	1	24.242	23.742	24.742	0								0	0	0	0.15417	1	6836	6836		3.8763	0	1				20313	2155	14601	14710	19934	19934					0.09480102327870554
IAEEITVGQL	10	Unmodified	_IAEEITVGQL_					0	0	0		nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2	nc|ENSG00000062598|Q96JJ3-3|ELMO2	nc|ENSG00000062598|Q96JJ3-3|ELMO2	MULTI-MSMS	A375_MHC_IP_R2	2	537.6939086914062	2	536.797872	1071.58119	-0.85298	-0.00045788	0.028413	1.5252E-05	-0.82457	-0.00044263	536.7978545145689	83.193	0.91328	83.932	83.595	84.508	0.73962					47	17	4	0	0	0	0.45806	1	31797	31797		29.082	5.061	1	33678000			20314	1332	14602	14711	19935	19935					0.04826288549293167
IAEETEHIL	9	Unmodified	_IAEETEHIL_					0	0	0			REV__ENSG00000203668|ENST00000366553|CHML	REV__ENSG00000203668|ENST00000366553|CHML	MULTI-SECPEP	A375_MHC_IP_R1	1	528.1742553710938	2	527.774396	1053.53424	-0.73717	-0.00038906	0.82073	0.00043316	0.083561	4.4101E-05	527.774760403923	130.54	0.20389	130.54	130.46	130.67	0					8	3	3	0	0	0	0.20094	1	50278	50278		53.576	11.481	1	86196000	+		20315	22464	14603	14712	19936	19936					0.009614289981300317
IAEKETLEY	9	Unmodified	_IAEKETLEY_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14;ENST00000498360.5_1_1:225142255-225148920:+|nuORF;nc|ENSG00000185842|Q0VDD8-3|DNAH14;nc|ENSG00000185842|Q0VDD8-2|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-SECPEP	A375_MHC_IP_R1	1	548.6817626953125	2	548.282054	1094.54956	-0.85134	-0.00046677	0.20863	0.00011439	-0.64271	-0.00035239	548.2823089055129	38.319	0.71533	38.319	37.964	38.679	0					35	13	5	0	0	0	0.053555	1	12982	12982		90.135	28.777	1	17074000			20316	8698	14604	14713	19937	19937					0.006062957953417936
IAEKETLEY	9	Unmodified	_IAEKETLEY_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14;ENST00000498360.5_1_1:225142255-225148920:+|nuORF;nc|ENSG00000185842|Q0VDD8-3|DNAH14;nc|ENSG00000185842|Q0VDD8-2|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6818237304688	2	548.282054	1094.54956	-1.0473	-0.00057424	0.267	0.00014639	-0.78034	-0.00042784	548.2822056825815	37.621	0.71721	38.394	38.073	38.79	0.77366					35	13	4	0	0	0	0.038931	1	13749	13749		100.09	38.733	1	19287000			20317	8698	14604	14713	19938	19938					0.006062957953417936
IAELLQFSP	9	Unmodified	_IAELLQFSP_					0	0	0		ENSG00000178093|ENST00000585580|TSSK6	ENSG00000178093|ENST00000585580|TSSK6	ENSG00000178093|ENST00000585580|TSSK6	MULTI-SECPEP	A375_MHC_IP_R1	1	508.7004699707031	2	509.2844	1016.55425	-0.48766	-0.00024836	-1.0445	-0.00053196	-1.5322	-0.00078032	509.2846829904427	47.277	0.71737	47.277	46.749	47.467	0					18	13	2	0	0	0	0.73363	1	16660	16660		15.847	9.6414	1	992900			20318	8132	14605	14714	19939	19939					0.046632247287675455
IAENYLDDV	9	Unmodified	_IAENYLDDV_					0	0	0		tr|U7SXX3|U7SXX3_FUSNUUridinephosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00947PE=3SV=1	tr|U7SXX3|U7SXX3_FUSNUUridinephosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00947PE=3SV=1	tr|U7SXX3|U7SXX3_FUSNUUridinephosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00947PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	525.68798828125	2	526.250754	1050.48696	-0.4511	-0.00023739	-0.49331	-0.0002596	-0.94441	-0.00049699	526.250796222439	76.52	0.96416	77.26	76.691	77.655	0.74052					21	18	2	0	0	0	0.69504	1	29158	29158		12.532	0	1	629030			20319	29832	14606	14715	19940	19940					-0.03626850272871707
IAEPGRYY	8	Unmodified	_IAEPGRYY_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	A375_MHC_IP_R2	2	485.2286682128906	2	484.745442	967.476331	-0.45468	-0.0002204	-0.15309	-7.4208E-05	-0.60777	-0.00029461	484.7453570041387	46.542	0.15416	47.307	47.21	47.364	0.76518					4	2	2	0	0	0	0.75805	1	17402	17402		18.135	1.1927	1	452180			20320	3336	14607	14716	19941	19941					-0.008707881366376569
IAERDLPGL	9	Unmodified	_IAERDLPGL_					0	0	0			REV__ENSG00000074276|ENST00000261944|CDHR2	REV__ENSG00000074276|ENST00000261944|CDHR2	MULTI-SECPEP	A375_MHC_IP_R2	2	492.67926025390625	2	492.279649	982.544745	-0.63472	-0.00031246	0.43524	0.00021426	-0.19948	-9.82E-05	492.27979875550744	66.58	0.86711	67.316	66.831	67.698	0.73631					21	16	2	0	0	0	0.24548	1	25217	25217		43.858	5.8843	1	2442200	+		20321	16633	14608	14717	19942	19942					0.05277456443241135
IAETLSDLF	9	Unmodified	_IAETLSDLF_					0	0	0		ATP6V0D2|p.P147L|1|0.24|ENSG00000147614|chr8:86139594-86139594|C/T|missense_variant	ATP6V0D2|p.P147L|1|0.24|ENSG00000147614|chr8:86139594-86139594|C/T|missense_variant	ATP6V0D2|p.P147L|1|0.24|ENSG00000147614|chr8:86139594-86139594|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	505.23150634765625	2	504.76604	1007.51753	-0.66432	-0.00033533	1.1056	0.00055807	0.44128	0.00022274	504.7667912064045	83.022	0.9137	83.762	83.544	84.458	0.73962					26	17	2	0	0	0	0.40079	1	31519	31519		24.674	1.5255	1	1472300			20322	209	14609	14718	19943	19943					0.01406928112191963
IAFCHFFTV	9	Unmodified	_IAFCHFFTV_					0	0	0			REV__nc|ENSG00000165186|Q96NR3-2|PTCHD1	REV__nc|ENSG00000165186|Q96NR3-2|PTCHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	542.203369140625	2	542.767863	1083.52117	-0.56139	-0.0003047	1.0225	0.00055501	0.46116	0.0002503	543.270267243837	93.791	0.55816	93.791	93.433	93.991	0					15	10	2	0	0	0	0.52144	1	34426	34426		23.148	0	1	892970	+		20323	20557	14610	14719	19944	19944					-0.01724680594952588
IAFFPLGISV	10	Unmodified	_IAFFPLGISV_					0	0	0			REV__TRPC7|p.L365F|1|0.5|ENSG00000069018|chr5:136274708-136274708|G/A|missense_variant	REV__TRPC7|p.L365F|1|0.5|ENSG00000069018|chr5:136274708-136274708|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	532.2119750976562	2	532.312961	1062.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.023	1	71.757	71.257	72.257	0.73421								0	0	0	0.15047	1	26934	26934		16.942	3.8998	1		+		20324	28911	14611	14720	19945	19945					0.08256692005124933
IAFGSKSI	8	Unmodified	_IAFGSKSI_					0	0	0			REV__nc|ENSG00000164796|Q7Z407-5|CSMD3	REV__nc|ENSG00000164796|Q7Z407-5|CSMD3	MULTI-MSMS	A375_MHC_IP_R1	1	412.2837829589844	2	411.739628	821.464704	-0.113	-4.6525E-05	0.31434	0.00012943	0.20134	8.2901E-05	411.73964841217196	32.577	0.40229	32.577	32.383	32.785	0					13	7	3	0	0	0	0.6817	1	10584	10584		40.449	8.3316	1	1879100	+		20325	20517	14612	14721	19946	19946					0.04683014840054511
IAFGSKSI	8	Unmodified	_IAFGSKSI_					0	0	0			REV__nc|ENSG00000164796|Q7Z407-5|CSMD3	REV__nc|ENSG00000164796|Q7Z407-5|CSMD3	MULTI-SECPEP	A375_MHC_IP_R1	1	412.1396789550781	2	411.739628	821.464704	-0.113	-4.6525E-05	0.31434	0.00012943	0.20134	8.2901E-05	411.73964841217196	32.577	0.40229	32.577	32.383	32.785	0					13	7	3	0	0	0	0.78043	1	10569	10569		40.449	8.3316	1	1879100	+		20326	20517	14612	14721	19947	19947					0.04683014840054511
IAFMVETQL	9	Unmodified	_IAFMVETQL_					0	0	0		ENST00000396821.7_1_22:38879728-38879824:-|nuORF	ENST00000396821.7_1_22:38879728-38879824:-|nuORF	ENST00000396821.7_1_22:38879728-38879824:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	526.267578125	2	526.27826	1050.54197	-0.52582	-0.00027673	-0.32525	-0.00017117	-0.85107	-0.0004479	526.2780490634625	128.08	0.60893	128.35	127.97	128.58	0.26593					17	11	3	0	0	0	0.55818	1	50249	50249		16.942	1.0951	1	5685400			20327	11496	14613	14722	19948	19948					0.018718649940637988
IAFPTKTII	9	Unmodified	_IAFPTKTII_					0	0	0		ENST00000489613.1_1_2:234294779-234297133:+|nuORF	ENST00000489613.1_1_2:234294779-234297133:+|nuORF	ENST00000489613.1_1_2:234294779-234297133:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	501.6905212402344	2	502.312961	1002.61137	-0.43853	-0.00022028	0.69139	0.00034729	0.25286	0.00012702	502.31318886866507	115.05	0.51201	115.74	115.47	115.98	0.68999					15	9	3	0	0	0	0.60917	1	43320	43320		9.3831	2.66	1	1696100			20328	12634	14614	14723	19949	19949					0.11016692005159712
IAGDPFPTVHW	11	Unmodified	_IAGDPFPTVHW_					0	0	0		nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK	nc|ENSG00000065534|Q15746-3|MYLK	nc|ENSG00000065534|Q15746-3|MYLK	MULTI-MSMS	A375_MHC_IP_R1	1	414.5841369628906	3	413.876746	1238.60841	0.27334	0.00011313	-0.74643	-0.00030893	-0.4731	-0.0001958	413.8764350570408	58.026	0.40473	58.026	57.873	58.278	0					17	7	3	0	0	0	0.73283	1	20819	20819		5.0475	2.9615	1	1141100			20329	1387	14615	14724	19950	19950					-0.0013518311968709895
IAGDPFPTVHW	11	Unmodified	_IAGDPFPTVHW_					0	0	0		nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK	nc|ENSG00000065534|Q15746-3|MYLK	nc|ENSG00000065534|Q15746-3|MYLK	MULTI-MATCH	A375_MHC_IP_R2	2		3	413.876746	1238.60841	-0.37652	-0.00015583	0.25949	0.0001074	-0.11703	-4.8435E-05	413.87653941140815	57.193	0.55972	57.943	57.561	58.121	0.75015	-0.041257	0.00081192	NaN	5.0475	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1474700			20330	1387	14615	14724							-0.0013518311968709895
IAGEQILE	8	Unmodified	_IAGEQILE_					0	0	0		CCDC70|p.M200I|1|0.32|ENSG00000123171|chr13:51865978-51865978|G/A|missense_variant	CCDC70|p.M200I|1|0.32|ENSG00000123171|chr13:51865978-51865978|G/A|missense_variant	CCDC70|p.M200I|1|0.32|ENSG00000123171|chr13:51865978-51865978|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	436.58380126953125	2	436.739825	871.465098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.47	1	48.232	47.732	48.732	0.76128								0	0	0	0.16876	1	17800	17800		13.906	2.2658	1				20331	317	14616	14725	19951	19951					0.024223897692309038
IAGETSSHAF	10	Unmodified	_IAGETSSHAF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;TTN|p.L14011*|1|0.26|ENSG00000155657|chr2:178618595-178618595|A/-|frameshift_variant;TTN|p.V5956Efs*8|1|0.3|ENSG00000155657|chr2:178729292-178729338|CAGGGCAACTCTAGTACTGCATGAGCAGCTGCCGCCTTCATTGGATA/-|frameshift_variant;TTN|p.F5884Lfs*5|1|0.04|ENSG00000155657|chr2:178729553-178729553|A/-|frameshift_variant;TTN|p.D2189Tfs*17|1|0.21|ENSG00000155657|chr2:178775147-178775147|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	A375_MHC_IP_R1	1	510.2184143066406	2	510.243264	1018.47197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.214	1	90.214	89.714	90.714	0								0	0	0	0.14793	1	33152	33152		21.747	4.8044	1				20332	6151;14694;14693	14617	14726	19952	19952					-0.03652297350186018
IAGETSSHAF	10	Unmodified	_IAGETSSHAF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;TTN|p.L14011*|1|0.26|ENSG00000155657|chr2:178618595-178618595|A/-|frameshift_variant;TTN|p.V5956Efs*8|1|0.3|ENSG00000155657|chr2:178729292-178729338|CAGGGCAACTCTAGTACTGCATGAGCAGCTGCCGCCTTCATTGGATA/-|frameshift_variant;TTN|p.F5884Lfs*5|1|0.04|ENSG00000155657|chr2:178729553-178729553|A/-|frameshift_variant;TTN|p.D2189Tfs*17|1|0.21|ENSG00000155657|chr2:178775147-178775147|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R2	2	510.218017578125	2	510.243264	1018.47197	-0.66908	-0.00034139	0.77729	0.00039661	0.10821	5.5215E-05	510.2437649218278	89.109	0.39973	89.841	89.635	90.035	0.7318					10	7	2	0	0	0	0.40101	1	33932	33932		34.102	7.2188	1	621500			20333	6151;14694;14693	14617	14726	19953	19953					-0.03652297350186018
IAGFAVGWGP	10	Unmodified	_IAGFAVGWGP_					0	0	0		ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	MULTI-SECPEP	A375_MHC_IP_R2	2	488.4687805175781	2	487.758352	973.502152	-0.98579	-0.00048083	-0.66257	-0.00032318	-1.6484	-0.000804	487.7589776040491	53.891	0.46158	54.642	54.404	54.866	0.75105					17	8	3	0	0	0	0.8716	1	20330	20330		18.135	1.0221	1	2023100			20334	4829	14618	14727	19954	19954					0.014341061056597937
IAGFEIFDF	9	Unmodified	_IAGFEIFDF_					0	0	0		ENSG00000197616|ENST00000405093|MYH6;ENST00000557461.1_1_14:23869380-23876432:-|nuORF;ENSG00000092054|ENST00000355349|MYH7;ENSG00000006788|ENST00000252172|MYH13;ENSG00000125414|ENST00000245503|MYH2;nc|ENSG00000125414|Q9UKX2-2|MYH2;ENSG00000133020|ENST00000403437|MYH8;ENSG00000264424|ENST00000255381|MYH4;ENSG00000109061|ENST00000226207|MYH1	ENSG00000197616|ENST00000405093|MYH6;ENSG00000006788|ENST00000252172|MYH13;ENSG00000125414|ENST00000245503|MYH2;ENSG00000133020|ENST00000403437|MYH8;ENSG00000264424|ENST00000255381|MYH4	ENSG00000125414|ENST00000245503|MYH2	MULTI-SECPEP	A375_MHC_IP_R2	2	530.1614379882812	2	529.7633	1057.51205	-0.72078	-0.00038184	-2.121	-0.0011236	-2.8418	-0.0015055	529.7618365034916	28.053	0.35572	28.731	28.553	28.909	0.67857					10	6	3	0	0	0	0.62767	1	9686	9686		11.64	0	1	3408400			20335	9180;3959;9953;932;4473	14619	14728	19955	19955					-0.01440750679626035
IAGFLHLLC	9	Unmodified	_IAGFLHLLC_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-SECPEP	A375_MHC_IP_R1	1	493.13018798828125	2	493.778231	985.541908	-0.014459	-7.1394E-06	1.5267	0.00075383	1.5122	0.00074669	493.7791902854912	38.839	0.35476	38.839	38.628	38.983	0					10	6	2	0	0	0	0.73662	1	13274	13274		5.2307	2.9279	1	1970900	+		20336	19422	14620	14729	19956	19956					0.04855909784726009
IAGFSGSGQ	9	Unmodified	_IAGFSGSGQ_					0	0	0			REV__nc|ENSG00000135913|Q86T82-2|USP37	REV__nc|ENSG00000135913|Q86T82-2|USP37	MSMS	A375_MHC_IP_R1	1	412.1396789550781	2	412.200867	822.387182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.651	1	32.651	32.151	33.151	0								0	0	0	0.15283	1	10569	10569		16.942	2.104	1		+		20337	18898	14621	14730	19957	19957					-0.031116230961288238
IAGHKLFDI	9	Unmodified	_IAGHKLFDI_					0	0	0		tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1	tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1	tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	507.6921081542969	2	507.292559	1012.57057	-0.6718	-0.0003408	0.37497	0.00019022	-0.29683	-0.00015058	507.29288280233857	88.118	0.50775	88.85	88.468	88.976	0.7318					14	9	2	0	0	0	0.58271	1	33543	33543		10.074	0	1	2273200			20338	29747	14622	14731	19958	19958					0.06478350685495116
IAGLNKILQ	9	Unmodified	_IAGLNKILQ_					0	0	0			REV__KCNAB1|p.E384K|1|0.3|ENSG00000169282|chr3:156531477-156531477|G/A|missense_variant	REV__KCNAB1|p.E384K|1|0.3|ENSG00000169282|chr3:156531477-156531477|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	485.6535949707031	2	485.30821	968.601866	-0.3364	-0.00016326	-0.53892	-0.00026154	-0.87532	-0.0004248	485.30790837781234	58.811	0.25322	58.811	58.633	58.887	0					5	4	2	0	0	0	0.55359	1	21132	21132		28.487	0	1	979700	+		20339	26819	14623	14732	19959	19959					0.11630923719621933
IAGPGLPDL	9	Unmodified	_IAGPGLPDL_					0	0	0		nc|ENSG00000284922|Q8WZ04-2|TOMT;nc|ENSG00000284922|Q8WZ04|TOMT	nc|ENSG00000284922|Q8WZ04-2|TOMT	nc|ENSG00000284922|Q8WZ04-2|TOMT	MULTI-SECPEP	A375_MHC_IP_R1	1	427.1450500488281	2	426.744911	851.475269	-0.21634	-9.2323E-05	0.039049	1.6664E-05	-0.17729	-7.5659E-05	426.7448217703987	87.181	0.50898	87.181	86.881	87.39	0					15	9	3	0	0	0	0.23974	1	31999	31999		40.449	0	1	2036200			20340	14945	14624	14733	19960	19960					0.04358997494466621
IAGPGLPDL	9	Unmodified	_IAGPGLPDL_					0	0	0		nc|ENSG00000284922|Q8WZ04-2|TOMT;nc|ENSG00000284922|Q8WZ04|TOMT	nc|ENSG00000284922|Q8WZ04-2|TOMT	nc|ENSG00000284922|Q8WZ04-2|TOMT	MULTI-SECPEP	A375_MHC_IP_R2	2	427.14508056640625	2	426.744911	851.475269	-0.034079	-1.4543E-05	-0.089951	-3.8386E-05	-0.12403	-5.2929E-05	426.74487618417515	86.37	0.5621	87.103	86.845	87.407	0.733					23	10	3	0	0	0	0.36419	1	32869	32869		32.117	5.2333	1	2032500			20341	14945	14624	14733	19961	19961					0.04358997494466621
IAGPGLTDYL	10	Unmodified	_IAGPGLTDYL_					0	0	0			REV__nc|ENSG00000164398|Q9UKU0-7|ACSL6	REV__nc|ENSG00000164398|Q9UKU0-7|ACSL6	MULTI-MSMS	A375_MHC_IP_R1	1	511.1972351074219	2	510.274032	1018.53351	-0.322	-0.00016431	-0.17656	-9.0095E-05	-0.49856	-0.0002544	510.27396106575895	105.48	4.1225	105.48	104.89	109.02	0					228	80	5	0	0	0	0.66712	1	39420	39420		15.847	0	1	780440000	+		20342	20491	14625	14734	19962	19962					0.024986343490695617
IAGTTFFGEV	10	Unmodified	_IAGTTFFGEV_					0	0	0			REV__nc|ENSG00000150625|P51674-3|GPM6A	REV__nc|ENSG00000150625|P51674-3|GPM6A	MULTI-SECPEP	A375_MHC_IP_R2	2	521.1154174804688	2	521.266207	1040.51786	-0.74158	-0.00038656	1.1614	0.00060541	0.41984	0.00021885	521.2666620664759	97.58	0.61018	98.336	98.077	98.687	0.75587					24	11	3	0	0	0	0.76414	1	37103	37103		20.454	0	1	1398400	+		20343	19716	14626	14735	19963	19963					-0.0007765216794268781
IAGYVSFQI	9	Unmodified	_IAGYVSFQI_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	A375_MHC_IP_R2	2	499.68695068359375	2	499.271293	996.528032	-0.44039	-0.00021988	0.82933	0.00041406	0.38893	0.00019418	499.2718966613569	79.43	0.60565	80.174	79.796	80.401	0.74474					19	11	2	0	0	0	0.67221	1	30042	30042		19.439	15.11	1	3852200			20344	1157	14627	14736	19964	19964					0.029629555573023936
IAHASPPD	8	Unmodified	_IAHASPPD_					0	0	0			REV__ENST00000559169.1_1_15:101113210-101113612:-|nuORF	REV__ENST00000559169.1_1_15:101113210-101113612:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	403.6275939941406	2	404.20341	806.392267	-0.4272	-0.00017267	0.53504	0.00021626	0.10784	4.359E-05	404.2036006321494	33.933	0.30349	33.933	33.748	34.052	0					8	5	2	0	0	0	0.94479	1	11105	11105		8.5933	3.8373	1	1490900	+		20345	26150	14628	14737	19965	19965					-0.018673192335313615
IAHENYYV	8	Unmodified	_IAHENYYV_					0	0	0			REV__tr|U7SZZ9|U7SZZ9_FUSNUGalactose-1-phosphateuridylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=galTPE=3SV=1	REV__tr|U7SZZ9|U7SZZ9_FUSNUGalactose-1-phosphateuridylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=galTPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	505.19000244140625	2	504.742899	1007.47125	-0.15639	-7.8936E-05	-0.16447	-8.3015E-05	-0.32086	-0.00016195	504.74266020702623	109.4	1.0688	109.4	108.86	109.93	0					29	20	2	0	0	0	0.96296	1	39949	39949		2.5775	0	1	889220	+		20346	28660	14629	14738	19966	19966					-0.03219091999244483
IAHNADPIK	9	Unmodified	_IAHNADPIK_					0	0	0		ENST00000486538.1_1_3:121213416-121213641:+|nuORF	ENST00000486538.1_1_3:121213416-121213641:+|nuORF	ENST00000486538.1_1_3:121213416-121213641:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	490.171142578125	2	489.771991	977.529429	-0.37987	-0.00018605	-0.16073	-7.8722E-05	-0.54061	-0.00026477	489.77177383954216	43.616	0.55504	44.386	44.077	44.632	0.77041					22	10	3	0	0	0	0.49205	1	16226	16226		34.402	34.402	1	4838100			20347	12584	14630	14739	19967	19967					0.039765896460380645
IAHQEQSPGL	10	Unmodified	_IAHQEQSPGL_					0	0	0			REV__nc|ENSG00000165643|Q5JUK2|SOHLH1	REV__nc|ENSG00000165643|Q5JUK2|SOHLH1	MULTI-MSMS	A375_MHC_IP_R2	2	540.6768798828125	2	540.277638	1078.54072	-1.5425	-0.00083337	0.56084	0.00030301	-0.98165	-0.00053036	540.2776802661018	28.809	0.44706	29.507	29.333	29.78	0.69872					10	8	2	0	0	0	0.29801	1	10000	10000		40.239	9.6027	1	12202000	+		20348	20604	14631	14740	19968	19968					0.00459366949530704
IAHQEQSPGL	10	Unmodified	_IAHQEQSPGL_					0	0	0			REV__nc|ENSG00000165643|Q5JUK2|SOHLH1	REV__nc|ENSG00000165643|Q5JUK2|SOHLH1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	540.277638	1078.54072	-1.5425	-0.00083337	0.56084	0.00030301	-0.98165	-0.00053036	540.2776802661018	28.809	0.44706	29.507	29.333	29.78	0.69872	0.014728	0.00040542	NaN	40.239	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12202000	+		20349	20604	14631	14740							0.00459366949530704
IAHQLIKHW	9	Unmodified	_IAHQLIKHW_					0	0	0		nc|ENSG00000112874|Q9BQG2-2|NUDT12;ENSG00000112874|ENST00000230792|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	MULTI-SECPEP	A375_MHC_IP_R1	1	382.9572448730469	3	382.557459	1144.65055	0.24108	9.2226E-05	-0.30849	-0.00011802	-0.067413	-2.579E-05	382.55730791864016	32.145	0.36047	32.145	31.921	32.282	0					10	6	2	0	0	0	0.71071	1	10381	10381		19.362	10.61	1	2164500			20350	3116	14632	14741	19969	19969					0.08400837079375378
IAHYKTHEI	9	Unmodified	_IAHYKTHEI_					0	0	0		tr|U7SNL3|U7SNL3_FUSNUPoly(A)polymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02031PE=3SV=1	tr|U7SNL3|U7SNL3_FUSNUPoly(A)polymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02031PE=3SV=1	tr|U7SNL3|U7SNL3_FUSNUPoly(A)polymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02031PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	556.697265625	2	556.298373	1110.58219	-0.8363	-0.00046523	-0.43182	-0.00024022	-1.2681	-0.00070545	556.2975950818185	74.766	0.35635	75.504	75.264	75.621	0.73752					11	6	2	0	0	0	0.62767	1	28369	28369		11.64	0	1	1848100			20351	29555	14633	14742	19970	19970					0.031325477088330445
IAIAWKPP	8	Unmodified	_IAIAWKPP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R2	2	447.74652099609375	2	448.273638	894.532724	-0.59377	-0.00026617	-3.5033	-0.0015704	-4.0971	-0.0018366	448.2721780860678	58.023	0.55448	58.772	58.477	59.032	0.74895					13	10	2	0	0	0	0.972	1	21849	21849		2.3027	0.4585	1	1038700			20352	6151;14694	14634	14743	19971	19971					0.08123884490703404
IAIRSTQKLY	10	Unmodified	_IAIRSTQKLY_					0	0	0			REV__nc|ENSG00000157106|Q96Q15-2|SMG1	REV__nc|ENSG00000157106|Q96Q15-2|SMG1	MULTI-SECPEP	A375_MHC_IP_R2	2	596.20556640625	2	596.856055	1191.69756	-0.50836	-0.00030342	-0.41522	-0.00024783	-0.92358	-0.00055125	596.855612924626	70.254	0.50841	70.989	70.743	71.251	0.73421					14	9	2	0	0	0	0.91773	1	26641	26641		10.8	0	1	1189700	+		20353	20012	14635	14744	19972	19972					0.10937651839844875
IAKIPNFW	8	Unmodified	_IAKIPNFW_					0	0	0		nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;SET|p.D163*|1|0.21|ENSG00000119335|chr9:128692935-128692936|-/T|frameshift_variant	nc|ENSG00000119335|Q01105-3|SET	nc|ENSG00000119335|Q01105-3|SET	MULTI-MSMS	A375_MHC_IP_R1	1	494.69696044921875	2	494.78437	987.554188	-0.39987	-0.00019785	0.29729	0.00014709	-0.10258	-5.0754E-05	494.7843472533738	95.878	0.70917	95.878	95.565	96.274	0					39	13	4	0	0	0	0.019775	1	35237	35237		114.94	29.672	1	9491500			20354	3585	14636	14745	19973	19973					0.059912695194157095
IAKIPNFW	8	Unmodified	_IAKIPNFW_					0	0	0		nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;SET|p.D163*|1|0.21|ENSG00000119335|chr9:128692935-128692936|-/T|frameshift_variant	nc|ENSG00000119335|Q01105-3|SET	nc|ENSG00000119335|Q01105-3|SET	MULTI-MSMS	A375_MHC_IP_R2	2	495.6109924316406	2	494.78437	987.554188	-0.21233	-0.00010506	0.1946	9.6284E-05	-0.017733	-8.7738E-06	494.7843740132748	95.032	0.7626	95.782	95.483	96.246	0.75045					31	14	3	0	0	0	0.019775	1	36114	36114		114.94	67.195	1	9053600			20355	3585	14636	14745	19974	19974					0.059912695194157095
IAKKKPPNL	9	Unmodified	_IAKKKPPNL_					0	0	0			REV__nc|ENSG00000100239|O75170-6|PPP6R2	REV__nc|ENSG00000100239|O75170-6|PPP6R2	MULTI-SECPEP	A375_MHC_IP_R1	1	505.2317199707031	2	504.831852	1007.64915	-0.40454	-0.00020423	0.010634	5.3684E-06	-0.39391	-0.00019886	504.8318036756873	77.248	0.50491	77.248	77.032	77.537	0					16	9	2	0	0	0	0.75466	1	28180	28180		12.532	5.2423	1	1162400	+		20356	17062	14637	14746	19975	19975					0.14563202990609625
IAKKLCRRI	9	Unmodified	_IAKKLCRRI_					0	0	0			REV__nc|ENSG00000150712|Q9C0I1-3|MTMR12	REV__nc|ENSG00000150712|Q9C0I1-3|MTMR12	MULTI-MSMS	A375_MHC_IP_R1	1	551.3662109375	2	550.857878	1099.7012	-0.57814	-0.00031847	-0.47324	-0.00026069	-1.0514	-0.00057916	550.8575419542667	95.839	1.3674	95.839	95.465	96.833	0					60	26	4	0	0	0	0.74477	1	35090	35090		5.2307	5.2307	1	23601000	+		20357	19724	14638	14747	19976	19976					0.155340431327204
IAKKNGII	8	Unmodified	_IAKKNGII_					0	0	0			REV__ENSG00000164902|ENST00000297540|PHAX	REV__ENSG00000164902|ENST00000297540|PHAX	MULTI-SECPEP	A375_MHC_IP_R1	1	429.18438720703125	2	428.78437	855.554188	-0.063358	-2.7167E-05	0.12191	5.2271E-05	0.058547	2.5104E-05	428.7843867702061	96.771	0.86205	96.771	96.376	97.238	0					29	16	2	0	0	0	0.88799	1	35511	35511		28.173	0	1	4057700	+		20358	20525	14639	14748	19977	19977					0.12063269519433106
IAKLGAAI	8	Unmodified	_IAKLGAAI_					0	0	0		ENST00000371826.3_1_10:91066551-91066608:+|nuORF	ENST00000371826.3_1_10:91066551-91066608:+|nuORF	ENST00000371826.3_1_10:91066551-91066608:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	379.276611328125	2	378.752539	755.490525	0.16189	6.1316E-05	-0.11441	-4.3331E-05	0.047485	1.7985E-05	378.75249140411876	48.235	0.40244	48.992	48.829	49.231	0.75737					10	7	2	0	0	0	0.77123	1	18070	18070		14.582	0	1	911570			20359	11185	14640	14749	19978	19978					0.10299909082311842
IAKNNLEI	8	Unmodified	_IAKNNLEI_					0	0	0		ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	MULTI-SECPEP	A375_MHC_IP_R2	2	458.16851806640625	2	457.768917	913.523281	-0.60356	-0.00027629	-0.12961	-5.9333E-05	-0.73318	-0.00033563	457.76881282714004	60.578	0.50928	61.323	61.006	61.515	0.74504					15	9	2	0	0	0	0.64636	1	22921	22921		50.855	3.1063	1	1911200			20360	9303	14641	14750	19979	19979					0.06306071414508096
IAKNNLEI	8	Unmodified	_IAKNNLEI_					0	0	0		ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	MULTI-MATCH	A375_MHC_IP_R1	1		2	457.768917	913.523281	-0.26565	-0.00012161	0.010469	4.7923E-06	-0.25518	-0.00011682	457.7687747008967	61.489	0.40892	61.489	61.227	61.636	0	0.082754	7.9529E-05	NaN	50.855	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1857500			20361	9303	14641	14750							0.06306071414508096
IAKQSVTL	8	Unmodified	_IAKQSVTL_					0	0	0		ENST00000506450.1_1_4:25624416-25624897:+|nuORF	ENST00000506450.1_1_4:25624416-25624897:+|nuORF	ENST00000506450.1_1_4:25624416-25624897:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	430.6658935546875	2	430.26601	858.517468	-0.46863	-0.00020163	0.089657	3.8577E-05	-0.37897	-0.00016306	430.2660133837116	30.611	0.40442	30.611	30.402	30.806	0					13	7	2	0	0	0	0.55971	1	9743	9743		51.63	0	1	3023000			20362	12856	14642	14751	19980	19980					0.08254972902852842
IAKQSVTL	8	Unmodified	_IAKQSVTL_					0	0	0		ENST00000506450.1_1_4:25624416-25624897:+|nuORF	ENST00000506450.1_1_4:25624416-25624897:+|nuORF	ENST00000506450.1_1_4:25624416-25624897:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	430.6656799316406	2	430.26601	858.517468	-0.62991	-0.00027103	0.21099	9.078E-05	-0.41893	-0.00018025	430.26607308678297	29.864	0.4035	30.563	30.335	30.739	0.69872					12	7	2	0	0	0	0.2858	1	10454	10454		60.074	0	1	4989800			20363	12856	14642	14751	19981	19981					0.08254972902852842
IAKSAFLV	8	Unmodified	_IAKSAFLV_					0	0	0			REV__ENSG00000187714|ENST00000374115|SLC18A3	REV__ENSG00000187714|ENST00000374115|SLC18A3	MULTI-SECPEP	A375_MHC_IP_R1	1	425.1653137207031	2	424.765646	847.516739	-0.24541	-0.00010424	-0.035236	-1.4967E-05	-0.28065	-0.00011921	424.76557369323535	83.99	0.50588	83.99	83.736	84.241	0					18	9	3	0	0	0	0.69122	1	30765	30765		39.957	0	1	1756300	+		20364	22040	14643	14752	19982	19982					0.08688178253794376
IAKSFKEL	8	Unmodified	_IAKSFKEL_					0	0	0			REV__ENSG00000171495|ENST00000399564|MROH2B	REV__ENSG00000171495|ENST00000399564|MROH2B	MULTI-SECPEP	A375_MHC_IP_R2	2	467.5987854003906	2	468.28166	934.548768	-0.62933	-0.0002947	-0.059993	-2.8094E-05	-0.68933	-0.0003228	468.28155371175023	77.312	0.4076	78.055	77.908	78.315	0.74293					10	7	2	0	0	0	0.8957	1	29324	29324		28.487	3.0875	1	1292800	+		20365	21070	14644	14753	19983	19983					0.07887545936955576
IAKSLDLQV	9	Unmodified	_IAKSLDLQV_					0	0	0			REV__ENST00000556584.5_1_14:50131352-50154906:-|nuORF	REV__ENST00000556584.5_1_14:50131352-50154906:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1460876464844	2	493.797675	985.580796	-0.80041	-0.00039524	-1.6435	-0.00081155	-2.4439	-0.0012068	493.79773552187027	61.854	0.35204	62.597	62.27	62.622	0.74263					9	6	2	0	0	0	0.53748	1	23395	23395		30.637	0	1	935770	+		20366	26109	14645	14754	19984	19984					0.08742913620096715
IAKTTKET	8	Unmodified	_IAKTTKET_					0	0	0			REV__ENSG00000113716|ENST00000502717|HMGXB3	REV__ENSG00000113716|ENST00000502717|HMGXB3	MSMS	A375_MHC_IP_R2	2	446.2892761230469	2	446.260925	890.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.584	1	31.302	30.802	31.802	0.71857								0	0	0	0.16876	1	10758	10758		12.532	0	1		+		20367	17798	14646	14755	19985	19985					0.057663651776124425
IAKVRALDL	9	Unmodified	_IAKVRALDL_					0	0	0		TBC1D2B|p.V612I|1|0.34|ENSG00000167202|chr15:78013259-78013259|C/T|missense_variant	TBC1D2B|p.V612I|1|0.34|ENSG00000167202|chr15:78013259-78013259|C/T|missense_variant	TBC1D2B|p.V612I|1|0.34|ENSG00000167202|chr15:78013259-78013259|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	500.4748229980469	2	499.821484	997.628415	-0.48518	-0.0002425	-0.81364	-0.00040668	-1.2988	-0.00064918	499.82119959478456	88.881	0.50578	89.613	89.331	89.836	0.7318					15	9	2	0	0	0	0.60917	1	33748	33748		19.257	2.3147	1	1425300			20368	29304	14647	14756	19986	19986					0.1295061261095043
IAKVSLAV	8	Unmodified	_IAKVSLAV_					0	0	0		ENSG00000183831|ENST00000333279|ANKRD45;nc|ENSG00000285777|Q5TZF3-1|ANKRD45	ENSG00000183831|ENST00000333279|ANKRD45	ENSG00000183831|ENST00000333279|ANKRD45	MULTI-SECPEP	A375_MHC_IP_R2	2	401.16571044921875	2	400.765646	799.516739	-0.12849	-5.1495E-05	0.073372	2.9405E-05	-0.055119	-2.209E-05	400.7656327001894	65.254	1.2196	65.992	65.664	66.884	0.73811					41	23	3	0	0	0	0.60242	1	24702	24702		54.774	7.0249	1	12946000			20369	8535	14648	14757	19987	19987					0.10896178253813105
IALCIMSYT	9	Unmodified	_IALCIMSYT_					0	0	0			REV__ENST00000592247.1_1_19:33470904-33481620:-|nuORF	REV__ENST00000592247.1_1_19:33470904-33481620:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	507.1373596191406	2	507.753564	1013.49257	-0.64612	-0.00032807	-1.2279	-0.00062349	-1.8741	-0.00095156	508.25383551611355	91.392	0.25291	92.126	91.919	92.172	0.7345					6	4	2	0	0	0	0.77244	1	34727	34727		2.3027	0	1	1105700	+		20370	18628	14649	14758	19988	19988					-0.013631662863986094
IALEQMEAE	9	Unmodified	_IALEQMEAE_					0	0	0			REV__ENST00000590803.5_1_16:4747031-4751860:-|nuORF	REV__ENST00000590803.5_1_16:4747031-4751860:-|nuORF	MSMS	A375_MHC_IP_R1	1	517.2074584960938	2	517.247157	1032.47976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.517	1	87.517	87.017	88.017	0								0	0	0	0.15486	1	32113	32113		11.64	1.4569	1		+		20371	20827	14650	14759	19989	19989					-0.03517906144929839
IALFHNYK	8	Unmodified	_IALFHNYK_					0	0	0			REV__nc|ENSG00000112365|O43167-2|ZBTB24	REV__nc|ENSG00000112365|O43167-2|ZBTB24	MULTI-MSMS	A375_MHC_IP_R1	1	503.2033996582031	2	503.279452	1004.54435	-0.41238	-0.00020754	-0.92583	-0.00046595	-1.3382	-0.00067349	503.27909750689145	59.072	0.86522	59.072	58.582	59.448	0					34	16	3	0	0	0	0.77123	1	21333	21333		14.582	0	1	8303700	+		20372	17728	14651	14760	19990	19990					0.042260815140252816
IALGKTGF	8	Unmodified	_IALGKTGF_					0	0	0			REV__ENST00000462421.1_1_6:31498511-31498703:-|nuORF	REV__ENST00000462421.1_1_6:31498511-31498703:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	404.142333984375	2	403.742171	805.469789	-0.30763	-0.0001242	0.7564	0.00030539	0.44877	0.00018119	403.74240506745593	51.366	0.55742	51.366	51.119	51.676	0					15	10	2	0	0	0	0.972	1	18262	18262		0.79363	0	1	1955000	+		20373	18232	14652	14761	19991	19991					0.05927318702674711
IALIKHHSI	9	Unmodified	_IALIKHHSI_					0	0	0			REV__nc|ENSG00000165240|Q04656-5|ATP7A	REV__nc|ENSG00000165240|Q04656-5|ATP7A	MULTI-SECPEP	A375_MHC_IP_R2	2	515.64794921875	2	516.321651	1030.62875	-0.93345	-0.00048196	0.064172	3.3133E-05	-0.86928	-0.00044883	516.3214686073406	54.885	0.25577	55.636	55.422	55.678	0.75075					7	4	2	0	0	0	0.71541	1	20731	20731		3.9444	3.9444	1	813930	+		20374	20565	14653	14762	19992	19992					0.1146603233080441
IALLALRYD	9	Unmodified	_IALLALRYD_					0	0	0			REV__tr|U7SGN9|U7SGN9_FUSNU4-hydroxy-3-methylbut-2-en-1-yldiphosphatesynthase(flavodoxin)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispGPE=3SV=1	REV__tr|U7SGN9|U7SGN9_FUSNU4-hydroxy-3-methylbut-2-en-1-yldiphosphatesynthase(flavodoxin)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispGPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	524.1605834960938	2	524.313492	1046.61243	-0.49263	-0.00025829	0.091379	4.7911E-05	-0.40125	-0.00021038	524.3135102737472	73.46	1.318	73.46	73.082	74.4	0					70	24	5	0	0	0	0.14572	1	26694	26694		62.573	16.873	1	90837000	+		20375	28192	14654	14763	19993	19993					0.09098906374038052
IALLKGLAA	9	Unmodified	_IALLKGLAA_					0	0	0		ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000170185|Q8NB14-2|USP38;USP35|p.S563*|1|0.13|ENSG00000118369|chr11:78209543-78209543|C/-|frameshift_variant;nc|ENSG00000118369|Q9P2H5-2|USP35;ENSG00000118369|ENST00000529308|USP35	ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000118369|Q9P2H5-2|USP35	ENSG00000170185|ENST00000307017|USP38	MULTI-MSMS	A375_MHC_IP_R1	1	435.69451904296875	2	435.294571	868.574589	-0.22273	-9.6953E-05	0.049441	2.1521E-05	-0.17329	-7.5432E-05	435.2945000162261	81.21	0.50703	81.21	80.948	81.455	0					21	9	3	0	0	0	0.2264	1	29654	29654		36.044	0	1	2406400			20376	7479;3538	14655	14764	19994	19994					0.13504440179224275
IALNRFNEL	9	Unmodified	_IALNRFNEL_					0	0	0			REV__ENSG00000144026|ENST00000295208|ZNF514	REV__ENSG00000144026|ENST00000295208|ZNF514	MULTI-SECPEP	A375_MHC_IP_R1	1	545.705078125	2	545.306198	1088.59784	-0.74797	-0.00040787	-3.1947	-0.0017421	-3.9426	-0.0021499	545.3045405553764	86.401	0.96077	86.401	85.921	86.881	0					29	18	2	0	0	0	0.53748	1	31704	31704		24.021	2.2739	1	5952100	+		20377	19403	14656	14765	19995	19995					0.057088342259021374
IALNSAKLIQ	10	Unmodified	_IALNSAKLIQ_					0	0	0		ENST00000488519.1_1_9:130825709-130828462:-|nuORF;ENSG00000171169|ENST00000373078|NAIF1	ENST00000488519.1_1_9:130825709-130828462:-|nuORF	ENST00000488519.1_1_9:130825709-130828462:-|nuORF	MSMS	A375_MHC_IP_R2	2	357.60992431640625	3	357.557125	1069.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.776	1	40.55	40.05	41.05	0.77451								0	0	0	0.15464	1	14704	14704		5.7834	0	1				20378	7578	14657	14766	19996	19996					0.11750577919792704
IALPPIAKW	9	Unmodified	_IALPPIAKW_					0	0	0		nc|ENSG00000172915|Q8NFP9|NBEA;ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;LRBA|p.A543Dfs*12|1|0.47|ENSG00000198589|chr4:150905962-150905965|ACTG/-|frameshift_variant	nc|ENSG00000172915|Q8NFP9|NBEA;nc|ENSG00000198589|P50851-2|LRBA	nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	A375_MHC_IP_R1	1	505.21514892578125	2	504.81567	1007.61679	-0.28024	-0.00014147	-0.58422	-0.00029492	-0.86446	-0.00043639	504.8154004110679	105.28	0.30533	105.28	105.05	105.35	0					11	5	3	0	0	0	0.39388	1	38662	38662		39.957	19.086	1	1779900			20379	9287;7745	14658	14767	19997	19997					0.11328415587604468
IALPSLRIL	9	Unmodified	_IALPSLRIL_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	A375_MHC_IP_R1	1	498.7347717285156	2	498.334227	994.653902	-0.11419	-5.6906E-05	-0.14578	-7.2646E-05	-0.25997	-0.00012955	498.33408632432844	116.89	0.40759	116.89	116.6	117.01	0					11	7	2	0	0	0	0.070818	1	42906	42906		56.177	6.244	1	4527600			20380	9304	14659	14768	19998	19998					0.15636087133361798
IALPSLRIL	9	Unmodified	_IALPSLRIL_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	A375_MHC_IP_R2	2	498.73486328125	2	498.334227	994.653902	-0.34755	-0.0001732	0.08414	4.193E-05	-0.26341	-0.00013127	498.3341485024533	115.89	0.45831	116.58	116.34	116.8	0.68999					16	8	3	0	0	0	0.047602	1	43678	43678		65.235	6.5562	1	4979800			20381	9304	14659	14768	19999	19999					0.15636087133361798
IALQKESL	8	Unmodified	_IALQKESL_					0	0	0		nc|ENSG00000118557|Q8TBY8-4|PMFBP1;ENSG00000118557|ENST00000237353|PMFBP1;nc|ENSG00000118557|Q8TBY8-1|PMFBP1	nc|ENSG00000118557|Q8TBY8-4|PMFBP1	nc|ENSG00000118557|Q8TBY8-4|PMFBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	452.0195007324219	2	451.271293	900.528032	-0.57303	-0.00025859	0.22084	9.966E-05	-0.35219	-0.00015893	451.2714969618682	60.766	0.96722	61.511	60.801	61.769	0.74503					21	18	2	0	0	0	0.86263	1	22841	22841		34.102	0	1	1410600			20382	3552	14660	14769	20000	20000					0.07378955557271638
IALRNLLA	8	Unmodified	_IALRNLLA_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3;ENST00000476565.1_1_1:156506896-156507079:-|nuORF	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-SECPEP	A375_MHC_IP_R2	2	442.6897277832031	2	442.28982	882.565087	-0.48961	-0.00021655	0.15153	6.7022E-05	-0.33808	-0.00014953	442.289834550961	48.994	0.45992	49.751	49.434	49.894	0.75737					12	8	2	0	0	0	0.8824	1	18400	18400		30.225	1.1432	1	2232400			20383	8538	14661	14770	20001	20001					0.11910671893690505
IALVCWLSL	9	Unmodified	_IALVCWLSL_					0	0	0		L1PBa_dup1828|chr14:24643172-24644816:+|4.337200265864809|0.0733275215643681|5.89|458.0|76|3|anti-sense	L1PBa_dup1828|chr14:24643172-24644816:+|4.337200265864809|0.0733275215643681|5.89|458.0|76|3|anti-sense	L1PBa_dup1828|chr14:24643172-24644816:+|4.337200265864809|0.0733275215643681|5.89|458.0|76|3|anti-sense	MULTI-SECPEP	A375_MHC_IP_R2	2	509.69439697265625	2	509.293714	1016.57287	-0.68647	-0.00034962	1.8452	0.00093976	1.1588	0.00059014	509.29442093055184	78.617	0.45648	79.362	79.134	79.591	0.74474					15	8	2	0	0	0	0.40041	1	29860	29860		38.151	7.9264	1	2870600			20384	14278	14662	14771	20002	20002					0.06525063098956707
IALYRNISI	9	Unmodified	_IALYRNISI_					0	0	0			REV__nc|ENSG00000164220|O00254-2|F2RL2	REV__nc|ENSG00000164220|O00254-2|F2RL2	MULTI-MSMS	A375_MHC_IP_R2	2	532.2186889648438	2	531.818941	1061.62333	-0.6122	-0.00032558	0.34993	0.0001861	-0.26226	-0.00013948	531.8189621328642	108.87	0.35808	109.61	109.42	109.78	0.74683					12	6	2	0	0	0	0.12592	1	41115	41115		46.021	0	1	1339900	+		20385	20467	14663	14772	20003	20003					0.09498308748334239
IALYRNISI	9	Unmodified	_IALYRNISI_					0	0	0			REV__nc|ENSG00000164220|O00254-2|F2RL2	REV__nc|ENSG00000164220|O00254-2|F2RL2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	531.818941	1061.62333	-0.42728	-0.00022723	-0.024432	-1.2994E-05	-0.45171	-0.00024023	531.8186257740201	109.93	0.45707	109.93	109.68	110.14	0	0.16037	-0.00029955	NaN	46.021	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1010800	+		20386	20467	14663	14772							0.09498308748334239
IALYRNISI	9	Unmodified	_IALYRNISI_					0	0	0			REV__nc|ENSG00000164220|O00254-2|F2RL2	REV__nc|ENSG00000164220|O00254-2|F2RL2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	531.818941	1061.62333	-0.6122	-0.00032558	0.34993	0.0001861	-0.26226	-0.00013948	531.8189621328642	108.87	0.35808	109.61	109.42	109.78	0.74683	-0.16037	9.864E-05	NaN	46.021	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1339900	+		20387	20467	14663	14772							0.09498308748334239
IAMGLDKKPS	10	Unmodified	_IAMGLDKKPS_					0	0	0		ENSG00000178965|ENST00000326665|ERICH3;ERICH3|p.Y437Sfs*3|1|0.34|ENSG00000178965|chr1:74606781-74606782|-/CT|frameshift_variant;nc|ENSG00000178965|Q5RHP9-3|ERICH3;ERICH3|p.D602Tfs*22|1|0.28|ENSG00000178965|chr1:74590003-74590003|C/-|frameshift_variant;ERICH3|p.L1204*|1|0.25|ENSG00000178965|chr1:74572100-74572100|G/-|frameshift_variant	ENSG00000178965|ENST00000326665|ERICH3	ENSG00000178965|ENST00000326665|ERICH3	MSMS	A375_MHC_IP_R2	2	530.2077026367188	2	530.296985	1058.57942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.207	1	75.944	75.444	76.444	0.73752								0	0	0	0.14483	1	28545	28545		27.629	0.74515	1				20388	8191	14664	14773	20004	20004					0.052469562596797914
IAMQFIKRYLN	11	Unmodified	_IAMQFIKRYLN_					0	0	0			REV__FAM117B|p.E359Rfs*144|1|0.32|ENSG00000138439|chr2:202755647-202755647|T/-|frameshift_variant	REV__FAM117B|p.E359Rfs*144|1|0.32|ENSG00000138439|chr2:202755647-202755647|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	466.6636962890625	3	466.263835	1395.76968	-1.0982	-0.00051206	1.5017	0.00070019	0.40349	0.00018813	466.264334483602	29.758	0.40244	30.457	30.286	30.688	0.69872					16	7	3	0	0	0	0.72851	1	10450	10450		10.315	0.55098	1	2845800	+		20389	26604	14665	14774	20005	20005					0.08762242921943653
IAMYCDFAMV	10	Unmodified	_IAMYCDFAMV_					0	0	0			REV__OR4D11|p.S116F|1|0.26|ENSG00000176200|chr11:59503922-59503922|C/T|missense_variant	REV__OR4D11|p.S116F|1|0.26|ENSG00000176200|chr11:59503922-59503922|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	582.2102661132812	2	582.250331	1162.48611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.814	1	92.814	92.314	93.314	0								0	0	0	0.15417	1	34114	34114		7.2892	0.56607	1		+		20390	21392	14666	14775	20006	20006					-0.08863427509436406
IANFRENY	8	Unmodified	_IANFRENY_					0	0	0			REV__tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1	REV__tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	514.2241821289062	2	513.753798	1025.49304	-0.45448	-0.00023349	3.0347	0.0015591	2.5802	0.0013256	514.2567926933981	52.169	0.61072	52.169	51.879	52.49	0					17	11	2	0	0	0	0.77123	1	18513	18513		14.582	0	1	2552600	+		20391	28865	14667	14776	20007	20007					-0.01868287250681533
IANFRENY	8	Unmodified	_IANFRENY_					0	0	0			REV__tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1	REV__tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	513.753798	1025.49304	-0.97211	-0.00049943	2.6534	0.0013632	1.6812	0.00086374	513.754921598611	51.482	0.55807	52.234	51.966	52.524	0.75225	0.032477	-0.00015041	NaN	14.582	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1052400	+		20392	28865	14667	14776							-0.01868287250681533
IANGKINSAF	10	Unmodified	_IANGKINSAF_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R1	1	517.65185546875	2	517.785099	1033.55564	-0.53034	-0.0002746	-0.93422	-0.00048373	-1.4646	-0.00075833	517.7843963297857	52.362	0.50724	52.362	52.034	52.541	0					20	9	4	0	0	0	0.90513	1	18497	18497		2.4985	1.0166	1	1186600	+		20393	19932;27303	14668	14777	20008	20008					0.040208588175119075
IANSLKKIP	9	Unmodified	_IANSLKKIP_					0	0	0			REV__ENSG00000170456|ENST00000389082|DENND5B	REV__ENSG00000170456|ENST00000389082|DENND5B	MSMS	A375_MHC_IP_R2	2	492.34747314453125	2	492.316035	982.617516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.259	1	79.002	78.502	79.502	0.74293								0	0	0	0.15486	1	29718	29718		12.532	0.89125	1		+		20394	20994	14669	14778	20009	20009					0.12551210236654242
IANVAHTF	8	Unmodified	_IANVAHTF_					0	0	0		ENSG00000170515|ENST00000303305|PA2G4;nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENST00000473864.1_1_3:156528118-156528448:-|nuORF;ENST00000418595.1_1_6:112938557-112938875:-|nuORF	ENSG00000170515|ENST00000303305|PA2G4	ENSG00000170515|ENST00000303305|PA2G4	MULTI-MSMS	A375_MHC_IP_R1	1	437.1347351074219	2	436.734877	871.455202	-0.24403	-0.00010658	0.32025	0.00013987	0.076222	3.3289E-05	436.734939792422	40.117	0.5099	40.117	39.845	40.355	0					21	9	3	0	0	0	0.052283	1	13746	13746		103.75	14.321	1	10508000			20395	7515	14670	14779	20010	20010					0.01433246554518064
IANVAHTF	8	Unmodified	_IANVAHTF_					0	0	0		ENSG00000170515|ENST00000303305|PA2G4;nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENST00000473864.1_1_3:156528118-156528448:-|nuORF;ENST00000418595.1_1_6:112938557-112938875:-|nuORF	ENSG00000170515|ENST00000303305|PA2G4	ENSG00000170515|ENST00000303305|PA2G4	MULTI-MSMS	A375_MHC_IP_R2	2	437.1344299316406	2	436.734877	871.455202	-0.40826	-0.0001783	-0.086009	-3.7563E-05	-0.49427	-0.00021586	436.734750106812	39.267	0.61115	40.042	39.76	40.371	0.77451					26	11	3	0	0	0	0.046681	1	14473	14473		104.8	34.084	1	11560000			20396	7515	14670	14779	20011	20011					0.01433246554518064
IANYRPTL	8	Unmodified	_IANYRPTL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R1	1	474.6689453125	2	474.269084	946.523616	-0.031804	-1.5084E-05	-0.21815	-0.00010346	-0.24996	-0.00011855	474.2689418207757	45.158	0.85973	45.158	44.878	45.738	0					44	16	4	0	0	0	0.14575	1	15750	15750		85.642	41.783	1	62651000			20397	3298	14671	14780	20012	20012					0.048214911343848144
IANYRPTL	8	Unmodified	_IANYRPTL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	A375_MHC_IP_R2	2	474.66864013671875	2	474.269084	946.523616	-0.51969	-0.00024647	-0.1562	-7.4081E-05	-0.67589	-0.00032056	474.26900555546655	44.39	0.81166	45.159	44.782	45.594	0.76909					43	15	4	0	0	0	0.15187	1	16512	16512		85.642	29.1	1	68589000			20398	3298	14671	14780	20013	20013					0.048214911343848144
IAPGIRRLIPK	11	Unmodified	_IAPGIRRLIPK_					0	0	0		ENST00000368130.8_2_1:159043278-159046448:-|nuORF	ENST00000368130.8_2_1:159043278-159046448:-|nuORF	ENST00000368130.8_2_1:159043278-159046448:-|nuORF	MSMS	A375_MHC_IP_R2	2	617.4386596679688	2	617.411332	1232.80811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.07	1	105.84	105.34	106.34	0.76308								0	0	0	0.16331	1	39746	39746		1.4819	0	1				20399	11108	14672	14781	20014	20014					0.20101916618750693
IAPLPPVDSL	10	Unmodified	_IAPLPPVDSL_					0	0	0			REV__ENSG00000179841|ENST00000394718|AKAP5	REV__ENSG00000179841|ENST00000394718|AKAP5	MULTI-SECPEP	A375_MHC_IP_R1	1	511.6636657714844	2	511.30005	1020.58555	-0.24659	-0.00012608	-2.8281	-0.001446	-3.0747	-0.0015721	511.3005890649061	72.07	0.30336	72.07	71.866	72.169	0					8	5	2	0	0	0	0.76414	1	26173	26173		10.074	0	1	708310	+		20400	21581	14673	14782	20015	20015					0.07607797762852897
IAPPKPASW	9	Unmodified	_IAPPKPASW_					0	0	0		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-SECPEP	A375_MHC_IP_R1	1	484.1742248535156	2	483.774003	965.533452	-0.18253	-8.8304E-05	-0.38661	-0.00018703	-0.56914	-0.00027534	483.7739692778667	51.982	0.56078	51.982	51.676	52.237	0					24	10	3	0	0	0	0.56537	1	18494	18494		17.113	7.7655	1	2062000			20401	9273	14674	14783	20016	20016					0.04930679139749827
IAPPKPASW	9	Unmodified	_IAPPKPASW_					0	0	0		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-SECPEP	A375_MHC_IP_R2	2	484.1737060546875	2	483.774003	965.533452	-0.72924	-0.00035279	-0.11338	-5.4852E-05	-0.84262	-0.00040764	483.7738263208431	51.226	0.45565	51.978	51.713	52.169	0.75225					15	8	2	0	0	0	0.41434	1	19296	19296		39.95	25.368	1	1870300			20402	9273	14674	14783	20017	20017					0.04930679139749827
IAPSISKSF	9	Unmodified	_IAPSISKSF_					0	0	0			REV__tr|U7SWT9|U7SWT9_FUSNUGntRfamilytranscriptionalregulator/MocRfamilyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01171PE=3SV=1	REV__tr|U7SWT9|U7SWT9_FUSNUGntRfamilytranscriptionalregulator/MocRfamilyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01171PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	475.1788635253906	2	475.271293	948.528032	-0.4257	-0.00020232	0.30118	0.00014314	-0.12452	-5.9181E-05	475.2713351524865	68.359	0.96397	69.094	68.662	69.626	0.73511					55	18	4	0	0	0	0.050162	1	25953	25953		64.236	5.5575	1	25627000	+		20403	28609	14675	14784	20018	20018					0.05170955557287016
IAQDPRVY	8	Unmodified	_IAQDPRVY_					0	0	0		ENSG00000196376|ENST00000360388|SLC35F1;nc|ENSG00000196376|Q5T1Q4-2|SLC35F1	ENSG00000196376|ENST00000360388|SLC35F1	ENSG00000196376|ENST00000360388|SLC35F1	MULTI-SECPEP	A375_MHC_IP_R1	1	481.6588439941406	2	481.258717	960.50288	-0.35447	-0.00017059	0.060403	2.907E-05	-0.29407	-0.00014152	481.25871763657534	31.792	0.35648	31.792	31.565	31.921	0					11	6	2	0	0	0	0.64713	1	10226	10226		52.268	29.12	1	2529500			20404	9033	14676	14785	20019	20019					0.02104900754704886
IAQERLTVF	9	Unmodified	_IAQERLTVF_					0	0	0		DMWD|p.L609F|1|0.4|ENSG00000185800|chr19:45785671-45785671|G/A|missense_variant	DMWD|p.L609F|1|0.4|ENSG00000185800|chr19:45785671-45785671|G/A|missense_variant	DMWD|p.L609F|1|0.4|ENSG00000185800|chr19:45785671-45785671|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	539.2078857421875	2	538.808574	1075.60259	-0.93467	-0.00050361	-0.29551	-0.00015922	-1.2302	-0.00066283	538.8084234761075	80.774	0.61355	81.519	81.265	81.879	0.74474					25	11	3	0	0	0	0.037185	1	30663	30663		85.272	0	1	6337900			20405	756	14677	14786	20020	20020					0.06781718368665679
IAQPNYII	8	Unmodified	_IAQPNYII_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	A375_MHC_IP_R1	1	466.1477966308594	2	466.26601	930.517468	-0.24151	-0.00011261	-0.69008	-0.00032176	-0.93159	-0.00043437	466.26561399036336	55.34	0.40712	55.34	55.126	55.533	0					10	7	2	0	0	0	0.93416	1	19751	19751		14.582	14.582	1	1285400	+		20406	16376	14678	14787	20021	20021					0.049429729028588554
IAQRQIPTPE	10	Unmodified	_IAQRQIPTPE_					0	0	0			REV__ENSG00000174243|ENST00000308025|DDX23	REV__ENSG00000174243|ENST00000308025|DDX23	MULTI-MSMS	A375_MHC_IP_R1	1	384.9478759765625	3	384.8839	1151.62987	-0.036098	-1.3894E-05	0.55263	0.0002127	0.51653	0.00019881	384.88408057572923	26.074	1.0133	26.074	25.765	26.779	0					52	19	4	0	0	0	0.68889	1	7675	7675		14.218	7.495	1	40824000	+		20407	21277	14679	14788	20022	20022					0.060122019090158574
IAQRQIPTPE	10	Unmodified	_IAQRQIPTPE_					0	0	0			REV__ENSG00000174243|ENST00000308025|DDX23	REV__ENSG00000174243|ENST00000308025|DDX23	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	384.8839	1151.62987	-0.036098	-1.3894E-05	0.55263	0.0002127	0.51653	0.00019881	384.88408057572923	26.074	1.0133	26.074	25.765	26.779	0	0.11259	-0.00023434	NaN	14.218	52	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40824000	+		20408	21277	14679	14788							0.060122019090158574
IAQRQIPTPE	10	Unmodified	_IAQRQIPTPE_					0	0	0			REV__ENSG00000174243|ENST00000308025|DDX23	REV__ENSG00000174243|ENST00000308025|DDX23	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	384.8839	1151.62987	-0.55602	-0.000214	0.93875	0.00036131	0.38273	0.00014731	384.88420749422903	25.205	1.0177	25.849	25.568	26.585	0.64368	-0.11259	0.00021149	NaN	14.218	47	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44810000	+		20409	21277	14679	14788							0.060122019090158574
IAQSKNAGIVA	11	Unmodified	_IAQSKNAGIVA_					0	0	0		tr|U7STB1|U7STB1_FUSNUProteintranslocasesubunitSecDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secDPE=3SV=1	tr|U7STB1|U7STB1_FUSNUProteintranslocasesubunitSecDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secDPE=3SV=1	tr|U7STB1|U7STB1_FUSNUProteintranslocasesubunitSecDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secDPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	358.27642822265625	3	357.876746	1070.60841	-0.65911	-0.00023588	0.040012	1.432E-05	-0.6191	-0.00022156	357.8767625938295	25.552	0.76114	26.209	25.99	26.751	0.65759					37	14	4	0	0	0	0.48101	1	8544	8544		32.616	0	1	17165000			20410	29674	14680	14789	20023	20023					0.07592816880332975
IAREDLDV	8	Unmodified	_IAREDLDV_					0	0	0			REV__nc|ENSG00000125944|O43390-3|HNRNPR	REV__nc|ENSG00000125944|O43390-3|HNRNPR	MULTI-SECPEP	A375_MHC_IP_R1	1	466.1477966308594	2	465.748182	929.481811	-0.26179	-0.00012193	-0.080163	-3.7336E-05	-0.34195	-0.00015926	465.7479412354731	55.061	0.50824	55.061	54.822	55.33	0					14	9	2	0	0	0	0.96296	1	19751	19751		5.7604	0	1	1901600	+		20411	18374	14681	14790	20024	20024					0.014248906551983964
IARLTVAAPP	10	Unmodified	_IARLTVAAPP_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	A375_MHC_IP_R2	2	505.2156066894531	2	504.813659	1007.61277	-0.63686	-0.00032149	3.0225	0.0015258	2.3857	0.0012043	504.81541461091155	104.39	0.56028	105.15	104.85	105.41	0.76308					19	10	3	0	0	0	0.52785	2	39539	39539;39576		26.268	5.3969	1	1371100			20412	9691	14682	14791	20025;20026	20025					0.10926326093886018
IARMGYYSF	9	Unmodified	_IARMGYYSF_					0	0	0			REV__ENST00000376494.1_1_13:99373362-99378793:-|nuORF	REV__ENST00000376494.1_1_13:99373362-99378793:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	554.640380859375	2	554.268227	1106.5219	-0.87112	-0.00048284	3.1428	0.001742	2.2717	0.0012591	554.2699005195598	66.746	0.40802	67.482	67.24	67.648	0.73631					17	7	3	0	0	0	0.67483	1	25311	25311		10.074	0	1	1635000	+		20413	16885	14683	14792	20027	20027					-0.027098859458874358
IARNWKTL	8	Unmodified	_IARNWKTL_					0	0	0			REV__ENSG00000169902|ENST00000304842|TPST1	REV__ENSG00000169902|ENST00000304842|TPST1	MULTI-SECPEP	A375_MHC_IP_R2	2	500.7902526855469	2	501.298176	1000.5818	-0.53252	-0.00026695	3.121	0.0015646	2.5885	0.0012976	501.8033982077443	78.77	0.15317	79.515	79.387	79.54	0.74474					4	2	2	0	0	0	0.972	1	29899	29899		2.5775	1.976	1	364530	+		20414	20952	14684	14793	20028	20028					0.08153172779668694
IARSRWRRHLR	11	Unmodified	_IARSRWRRHLR_					0	0	0			REV__OSBPL3|p.S272L|1|0.29|ENSG00000070882|chr7:24863255-24863255|G/A|missense_variant	REV__OSBPL3|p.S272L|1|0.29|ENSG00000070882|chr7:24863255-24863255|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	502.18243408203125	3	502.971148	1505.89161	-0.73009	-0.00036722	0.23425	0.00011782	-0.49584	-0.00024939	503.3057078267559	143.14	0.65642	143.14	142.69	143.34	0					35	12	4	0	0	0	1.0014	1	54969	54969		0.094841	0.094841	1	5414700	+		20415	27705	14685	14794	20029	20029					0.15890465839152057
IARVRRTPA	9	Unmodified	_IARVRRTPA_					0	0	0		ENST00000491293.1_1_1:228289992-228290982:-|nuORF	ENST00000491293.1_1_1:228289992-228290982:-|nuORF	ENST00000491293.1_1_1:228289992-228290982:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	520.2261352539062	2	520.327799	1038.64105	-0.37466	-0.00019495	0.68414	0.00035597	0.30947	0.00016103	520.3281778036671	51.939	0.91698	51.939	51.219	52.136	0					21	17	2	0	0	0	0.79683	1	18392	18392		2.3027	2.3027	1	1306000			20416	12658	14686	14795	20030	20030					0.12327068793842955
IARVSLAGA	9	Unmodified	_IARVSLAGA_					0	0	0		SNRPB|p.P96S|1|0.49|ENSG00000125835|chr20:2463881-2463881|G/A|missense_variant	SNRPB|p.P96S|1|0.49|ENSG00000125835|chr20:2463881-2463881|G/A|missense_variant	SNRPB|p.P96S|1|0.49|ENSG00000125835|chr20:2463881-2463881|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	429.29095458984375	2	429.263802	856.513051	-0.17381	-7.4609E-05	0.11705	5.0245E-05	-0.056758	-2.4364E-05	429.2638472699655	42.041	0.35313	42.041	41.88	42.233	0					11	6	2	0	0	0	0.64136	1	14606	14606		12.241	0.60036	1	2295000			20417	29213	14687	14796	20031	20031					0.0790550847995064
IASFEALVK	9	Unmodified	_IASFEALVK_					0	0	0			REV__BDP1|p.P1911Rfs*9|1|0.11|ENSG00000145734|chr5:71524281-71524305|TCCTGAACCTGTTTCTGCTCAGATT/-|frameshift_variant;REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	MULTI-SECPEP	A375_MHC_IP_R2	2	489.6866149902344	2	489.286943	976.559333	-0.45496	-0.0002226	0.20663	0.0001011	-0.24833	-0.0001215	489.2869960404028	79.219	0.70831	79.964	79.693	80.401	0.74474					29	13	4	0	0	0	0.24548	1	30050	30050		52.268	21.632	1	8569200	+		20418	15507;19489	14688	14797	20032	20032					0.07011528591374372
IASFPLFGGV	10	Unmodified	_IASFPLFGGV_					0	0	0			REV__ENSG00000100926|ENST00000261789|TM9SF1	REV__ENSG00000100926|ENST00000261789|TM9SF1	MSMS	A375_MHC_IP_R2	2	504.19989013671875	2	504.28166	1006.54877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.915	1	71.649	71.149	72.149	0.73421								0	0	0	0.14793	1	26891	26891		21.747	2.3076	1		+		20419	17130	14689	14798	20033	20033					0.04575545936961589
IASFRGTV	8	Unmodified	_IASFRGTV_					0	0	0		nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-2|DOCK4;ENST00000476846.1_7:111503332-111846439:-|nuORF	nc|ENSG00000128512|Q8N1I0|DOCK4	nc|ENSG00000128512|Q8N1I0|DOCK4	MULTI-SECPEP	A375_MHC_IP_R2	2	426.43035888671875	2	425.742702	849.470852	-0.72769	-0.00030981	0.60979	0.00025961	-0.1179	-5.0195E-05	425.74290288771834	36.834	1.0182	37.605	37.308	38.327	0.7709					28	19	2	0	0	0	0.77651	1	13646	13646		34.102	1.9855	1	2825000			20420	4139	14690	14799	20034	20034					0.04009533071587157
IASGKLSTL	9	Unmodified	_IASGKLSTL_					0	0	0			REV__ENSG00000233198|ENST00000445101|RNF224	REV__ENSG00000233198|ENST00000445101|RNF224	MULTI-SECPEP	A375_MHC_IP_R1	1	445.6709289550781	2	445.271293	888.528032	0.057934	2.5796E-05	0.65156	0.00029012	0.7095	0.00031592	445.27122355193103	51.31	0.60785	51.31	51.017	51.625	0					24	11	3	0	0	0	0.16229	1	18187	18187		48.346	0	1	7551700	+		20421	22747	14691	14800	20035	20035					0.0793095555727632
IASHLLQSSM	10	Unmodified	_IASHLLQSSM_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-2|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	A375_MHC_IP_R1	1	544.1841430664062	2	543.784241	1085.55393	-0.48452	-0.00026347	-0.035126	-1.9101E-05	-0.51964	-0.00028257	543.7841637945517	44.101	0.35777	44.101	43.909	44.267	0					10	6	2	0	0	0	0.60608	1	15405	15405		20.415	4.2654	1	1488000			20422	1592	14692	14801	20036	20036					0.014574817372704274
IASIQKISF	9	Unmodified	_IASIQKISF_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1998596191406	2	503.800217	1005.58588	-0.60994	-0.00030729	0.11015	5.5493E-05	-0.49979	-0.00025179	503.8001176591371	70.323	0.65953	71.057	70.54	71.2	0.73421					21	12	3	0	0	0	0.10495	1	26653	26653		74.2	28.5	1	3561200			20423	3109	14693	14802	20037	20037					0.08331217482714237
IASLQHVMAI	10	Unmodified	_IASLQHVMAI_					0	0	0			REV__ENST00000484500.5_1_3:125642769-125647435:+|nuORF	REV__ENST00000484500.5_1_3:125642769-125647435:+|nuORF	MSMS	A375_MHC_IP_R1	1	361.5988464355469	3	361.539077	1081.5954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.197	1	39.197	38.697	39.697	0								0	0	0	0.15287	1	13373	13373		11.518	0.02317	1		+		20424	25298	14694	14803	20038	20038					0.05786662496598183
IASNEQVSL	9	Unmodified	_IASNEQVSL_					0	0	0			REV__ENST00000527791.5_1_11:118889211-118889349:-|nuORF	REV__ENST00000527791.5_1_11:118889211-118889349:-|nuORF	MSMS	A375_MHC_IP_R2	2	480.69171142578125	2	480.753464	959.492375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.91	1	66.649	66.149	67.149	0.73811								0	0	0	0.14851	1	24991	24991		24.021	1.5679	1		+		20425	25792	14695	14804	20039	20039					0.011008733096218748
IASQRLTPL	9	Unmodified	_IASQRLTPL_					0	0	0		ENSG00000125726|ENST00000245903|CD70	ENSG00000125726|ENST00000245903|CD70	ENSG00000125726|ENST00000245903|CD70	MULTI-SECPEP	A375_MHC_IP_R1	1	500.2029113769531	2	499.803291	997.59203	0.0060769	3.0372E-06	-0.13504	-6.7491E-05	-0.12896	-6.4454E-05	499.8031213596424	48.446	0.65798	48.446	48.173	48.831	0					30	12	3	0	0	0	0.16595	1	17077	17077		61.602	21.652	1	12345000			20426	3980	14696	14805	20040	20040					0.09313735714226823
IASQRLTPL	9	Unmodified	_IASQRLTPL_					0	0	0		ENSG00000125726|ENST00000245903|CD70	ENSG00000125726|ENST00000245903|CD70	ENSG00000125726|ENST00000245903|CD70	MULTI-SECPEP	A375_MHC_IP_R2	2	500.2030334472656	2	499.803291	997.59203	-0.40851	-0.00020418	-0.13352	-6.6735E-05	-0.54204	-0.00027091	499.80315572084555	47.55	0.60927	48.312	48.073	48.682	0.76128					21	8	3	0	0	0	0.23313	1	17813	17813		49.527	15.126	1	10372000			20427	3980	14696	14805	20041	20041					0.09313735714226823
IASRNFAKGC	10	Unmodified	_IASRNFAKGC_					0	0	0			REV__ZNF208|p.H1047Ifs*87|1|0.47|ENSG00000160321|chr19:21971895-21971895|G/-|frameshift_variant	REV__ZNF208|p.H1047Ifs*87|1|0.47|ENSG00000160321|chr19:21971895-21971895|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	533.69091796875	2	533.776751	1065.53895	-1.0864	-0.00057988	0.046817	2.499E-05	-1.0396	-0.00055489	533.7767686992216	20.88	0.30443	21.49	21.362	21.666	0.61029					8	5	2	0	0	0	0.6502	1	6582	6582		17.113	0.96379	1	955690	+		20428	20162	14697	14806	20042	20042					0.008800346599400655
IASSAAPLL	9	Unmodified	_IASSAAPLL_					0	0	0			REV__ENST00000299824.5_1_20:37547336-37547519:+|nuORF	REV__ENST00000299824.5_1_20:37547336-37547519:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	422.1706848144531	2	421.752736	841.490919	-0.014715	-6.2062E-06	-0.52491	-0.00022138	-0.53962	-0.00022759	421.7525095571159	69.085	0.70929	69.82	69.474	70.184	0.73512					20	13	2	0	0	0	0.12259	1	26140	26140		63.563	16.642	1	1301700	+		20429	23409	14698	14807	20043	20043					0.06383284011531032
IASVFKQW	8	Unmodified	_IASVFKQW_					0	0	0		nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A	nc|ENSG00000066933|B2RTY4-5|MYO9A	nc|ENSG00000066933|B2RTY4-5|MYO9A	MULTI-SECPEP	A375_MHC_IP_R2	2	490.1729736328125	2	489.774003	977.533452	-0.86585	-0.00042407	-1.3318	-0.00065227	-2.1976	-0.0010763	489.77357954178126	23.324	0.20187	23.954	23.828	24.029	0.63014					6	3	2	0	0	0	0.97144	1	7520	7520		14.582	8.2276	1	3153500			20430	1423	14699	14808	20044	20044					0.04378679139756514
IASWLVVTV	9	Unmodified	_IASWLVVTV_					0	0	0		ENSG00000117091|ENST00000368046|CD48	ENSG00000117091|ENST00000368046|CD48	ENSG00000117091|ENST00000368046|CD48	MULTI-SECPEP	A375_MHC_IP_R1	1	494.1610412597656	2	494.29731	986.580068	-0.49042	-0.00024241	-2.7909	-0.0013796	-3.2814	-0.001622	494.29633384611446	46.673	0.45692	46.673	46.495	46.952	0					11	8	2	0	0	0	0.58271	1	16416	16416		14.838	0	1	906550			20431	3454	14700	14809	20045	20045					0.08624118971044936
IASYSLLNV	9	Unmodified	_IASYSLLNV_					0	0	0			REV__TBC1D32|p.P800S|1|0.7|ENSG00000146350|chr6:121223319-121223319|G/A|missense_variant	REV__TBC1D32|p.P800S|1|0.7|ENSG00000146350|chr6:121223319-121223319|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	489.5017395019531	2	490.276575	978.538597	-0.2739	-0.00013429	-1.1743	-0.00057575	-1.4482	-0.00071004	490.2767963966744	59.828	0.40644	59.828	59.498	59.905	0					9	7	2	0	0	0	0.69504	1	21558	21558		4.3292	0	1	708390	+		20432	28082	14701	14810	20046	20046					0.04846938211710494
IATDSRQLY	9	Unmodified	_IATDSRQLY_					0	0	0			REV__nc|ENSG00000169554|O60315-2|ZEB2	REV__nc|ENSG00000169554|O60315-2|ZEB2	MULTI-SECPEP	A375_MHC_IP_R1	1	534.1795043945312	2	533.780013	1065.54547	-0.69863	-0.00037291	1.0681	0.00057016	0.36952	0.00019724	533.7808393373789	31.895	1.0198	31.895	31.565	32.585	0					24	19	2	0	0	0	0.24324	1	10284	10284		45.7	3.86	1	4081200	+		20433	20933	14702	14811	20047	20047					0.015322510922942456
IATGGRIV	8	Unmodified	_IATGGRIV_					0	0	0		ENST00000423695.6_1_5:10250480-10261980:+|nuORF;nc|ENSG00000150753|P48643-2|CCT5;ENSG00000150753|ENST00000280326|CCT5	ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENST00000423695.6_1_5:10250480-10261980:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	394.1451721191406	2	393.745245	785.475937	0.034528	1.3595E-05	0.14211	5.5954E-05	0.17664	6.9549E-05	393.7452307975384	31.338	0.60917	31.338	31.16	31.769	0					22	11	3	0	0	0	0.4193	1	10036	10036		58.679	6.4105	1	12364000			20434	11762	14703	14812	20048	20048					0.0746183693418061
IATGGRIV	8	Unmodified	_IATGGRIV_					0	0	0		ENST00000423695.6_1_5:10250480-10261980:+|nuORF;nc|ENSG00000150753|P48643-2|CCT5;ENSG00000150753|ENST00000280326|CCT5	ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENST00000423695.6_1_5:10250480-10261980:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	394.1450500488281	2	393.745245	785.475937	-0.1896	-7.4655E-05	-0.096831	-3.8127E-05	-0.28643	-0.00011278	393.7451220638741	30.572	0.75704	31.291	31.064	31.821	0.71857					31	14	3	0	0	0	0.4193	1	10735	10735		49.933	6.0747	1	8855900			20435	11762	14703	14812	20049	20049					0.0746183693418061
IATIFVMATF	10	Unmodified	_IATIFVMATF_					0	0	0		nc|ENSG00000196277|Q14831-5|GRM7;nc|ENSG00000196277|Q14831-3|GRM7;nc|ENSG00000196277|Q14831-4|GRM7;ENSG00000196277|ENST00000357716|GRM7;nc|ENSG00000196277|Q14831-2|GRM7	nc|ENSG00000196277|Q14831-5|GRM7	nc|ENSG00000196277|Q14831-5|GRM7	MULTI-SECPEP	A375_MHC_IP_R1	1	372.2733154296875	3	371.871944	1112.594	0.28031	0.00010424	2.6132	0.00097176	2.8935	0.001076	371.87315167743066	37.022	0.75899	37.022	36.695	37.454	0					24	14	3	0	0	0	0.9269	1	12475	12475		3.5871	0.26742	1	5174200			20436	9021	14704	14813	20050	20050					0.04221028407800986
IATKDVRIF	9	Unmodified	_IATKDVRIF_					0	0	0		ENSG00000085415|ENST00000399892|SEH1L;nc|ENSG00000085415|Q96EE3|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	MULTI-MSMS	A375_MHC_IP_R1	1	355.28155517578125	3	354.88172	1061.62333	0.16219	5.7559E-05	-0.64826	-0.00023006	-0.48607	-0.0001725	354.88148566944494	49.836	0.51025	49.836	49.591	50.101	0					20	9	3	0	0	0	0.094655	1	17646	17646		40.725	13.502	1	5525000			20437	1811	14705	14814	20051	20051					0.09498308748311501
IATKDVRIF	9	Unmodified	_IATKDVRIF_					0	0	0		ENSG00000085415|ENST00000399892|SEH1L;nc|ENSG00000085415|Q96EE3|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	MULTI-MSMS	A375_MHC_IP_R2	2	355.28143310546875	3	354.88172	1061.62333	-0.37162	-0.00013188	-0.12178	-4.3217E-05	-0.4934	-0.0001751	354.8816616497119	48.996	0.61185	49.753	49.434	50.046	0.75736					26	11	3	0	0	0	0.06083	1	18374	18374		47.732	14.287	1	4842700			20438	1811	14705	14814	20052	20052					0.09498308748311501
IATLETFDGE	10	Unmodified	_IATLETFDGE_					0	0	0			REV__ENST00000234875.8_1_1:6246387-6246558:-|nuORF	REV__ENST00000234875.8_1_1:6246387-6246558:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	366.6051025390625	3	365.845	1094.51317	0.025546	9.3457E-06	-1.1106	-0.00040632	-1.0851	-0.00039697	365.8440293100874	27.939	0.30275	27.939	27.684	27.987	0					6	5	2	0	0	0	0.93406	1	8444	8444		9.544	1.935	1	509190	+		20439	23085	14706	14815	20053	20053					-0.030305811013704442
IATLRKYTY	9	Unmodified	_IATLRKYTY_					0	0	0		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	MULTI-MSMS	A375_MHC_IP_R1	1	377.28521728515625	3	376.885241	1127.63389	0.33769	0.00012727	-0.20978	-7.9063E-05	0.12791	4.8206E-05	376.8850871457138	33.419	0.40701	33.419	33.241	33.648	0					15	7	3	0	0	0	0.12771	1	10898	10898		35.612	14.741	1	11024000			20440	4592	14707	14816	20054	20054					0.07518291402766408
IATLRKYTY	9	Unmodified	_IATLRKYTY_					0	0	0		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	MULTI-SECPEP	A375_MHC_IP_R2	2	377.2852783203125	3	376.885241	1127.63389	0.16118	6.0746E-05	-0.099352	-3.7444E-05	0.061827	2.3302E-05	376.88513452378265	32.572	0.50821	33.309	33.112	33.62	0.73691					15	9	2	0	0	0	0.24324	1	11606	11606		42.312	19.538	1	11277000			20441	4592	14707	14816	20055	20055					0.07518291402766408
IATPFIKLF	9	Unmodified	_IATPFIKLF_					0	0	0		ENSG00000149218|ENST00000278505|ENDOD1	ENSG00000149218|ENST00000278505|ENDOD1	ENSG00000149218|ENST00000278505|ENDOD1	MSMS	A375_MHC_IP_R1	1	525.7225341796875	2	525.323328	1048.6321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.13	1	125.13	124.63	125.63	0								0	0	0	0.026888	1	47449	47449		92.653	52.205	1				20442	5789	14708	14817	20056	20056					0.10973282384770755
IATPFIKLF	9	Unmodified	_IATPFIKLF_					0	0	0		ENSG00000149218|ENST00000278505|ENDOD1	ENSG00000149218|ENST00000278505|ENDOD1	ENSG00000149218|ENST00000278505|ENDOD1	MULTI-MSMS	A375_MHC_IP_R2	2	525.7233276367188	2	525.323328	1048.6321	-0.46215	-0.00024278	-0.68153	-0.00035802	-1.1437	-0.0006008	525.8243347614095	124.47	0.40213	124.8	124.6	125	0.32969					12	7	2	0	0	0	0.058226	1	48224	48224		75.761	33.921	1	12186000			20443	5789	14708	14817	20057	20057					0.10973282384770755
IATPPVARV	9	Unmodified	_IATPPVARV_					0	0	0			REV__nc|ENSG00000100320|O43251-3|RBFOX2	REV__nc|ENSG00000100320|O43251-3|RBFOX2	MULTI-SECPEP	A375_MHC_IP_R1	1	462.1535339355469	2	462.287277	922.560001	-0.14325	-6.6224E-05	3.0376	0.0014042	2.8943	0.001338	462.28917038305383	56.779	0.61111	56.779	56.447	57.059	0					16	11	2	0	0	0	0.35487	1	20228	20228		22.736	2.2827	1	2485400	+		20444	17073	14709	14818	20058	20058					0.09562368031083679
IATQRSPL	8	Unmodified	_IATQRSPL_					0	0	0			REV__nc|ENSG00000137948|Q58F21-4|BRDT	REV__nc|ENSG00000137948|Q58F21-4|BRDT	MULTI-SECPEP	A375_MHC_IP_R2	2	442.6532287597656	2	443.261259	884.507966	-0.76558	-0.00033935	0.10403	4.611E-05	-0.66155	-0.00029324	443.2612916120181	59.338	0.45324	60.085	59.896	60.349	0.74714					14	8	2	0	0	0	0.95423	1	22387	22387		7.9102	0.62092	1	2194200	+		20445	27252	14710	14819	20059	20059					0.0610920461731439
IATRKKWL	8	Unmodified	_IATRKKWL_					0	0	0			REV__TENM3|p.E1095K|1|0.2|ENSG00000218336|chr4:182738448-182738448|G/A|missense_variant	REV__TENM3|p.E1095K|1|0.2|ENSG00000218336|chr4:182738448-182738448|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	508.7047424316406	2	508.324194	1014.63383	-0.79573	-0.00040449	-0.97866	-0.00049748	-1.7744	-0.00090196	508.3236087546934	74.653	0.356	75.39	75.163	75.519	0.73752					11	6	2	0	0	0	0.86765	1	28325	28325		32.117	11.663	1	1111400	+		20446	28093	14711	14820	20060	20060					0.12710336193401872
IATRQLIL	8	Unmodified	_IATRQLIL_					0	0	0		ENST00000524933.1_1_11:13716477-13732426:+|nuORF;ENSG00000197601|ENST00000354817|FAR1	ENST00000524933.1_1_11:13716477-13732426:+|nuORF	ENST00000524933.1_1_11:13716477-13732426:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	464.70263671875	2	464.302927	926.591301	-0.91382	-0.00042429	0.22038	0.00010232	-0.69344	-0.00032197	464.30298119585564	54.102	0.50961	54.853	54.609	55.118	0.75105					18	9	2	0	0	0	0.55372	1	20421	20421		57.471	7.8024	1	5717300			20447	9177	14712	14821	20061	20061					0.125069410651804
IATSQNRIY	9	Unmodified	_IATSQNRIY_					0	0	0		nc|ENSG00000215021|Q99623-2|PHB2;ENSG00000215021|ENST00000535923|PHB2;ENST00000537646.5_1_12:7074850-7076486:-|nuORF;ENST00000546111.5_1_12:7074850-7079788:-|nuORF	nc|ENSG00000215021|Q99623-2|PHB2	nc|ENSG00000215021|Q99623-2|PHB2	MULTI-MSMS	A375_MHC_IP_R1	1	533.6876831054688	2	533.288005	1064.56146	-0.89179	-0.00047558	1.2876	0.00068666	0.3958	0.00021108	533.2890176357594	23.965	0.456	23.965	23.687	24.143	0					11	8	2	0	0	0	0.61998	1	6726	6726		13.906	3.0821	1	5904400			20448	9635	14713	14822	20062	20062					0.03175957329199264
IATSQNRIY	9	Unmodified	_IATSQNRIY_					0	0	0		nc|ENSG00000215021|Q99623-2|PHB2;ENSG00000215021|ENST00000535923|PHB2;ENST00000537646.5_1_12:7074850-7076486:-|nuORF;ENST00000546111.5_1_12:7074850-7079788:-|nuORF	nc|ENSG00000215021|Q99623-2|PHB2	nc|ENSG00000215021|Q99623-2|PHB2	MULTI-MSMS	A375_MHC_IP_R1	1	533.7002563476562	2	533.288005	1064.56146	-1.0894	-0.00058094	0.025325	1.3505E-05	-1.064	-0.00056744	533.287992576721	29.429	0.84732	29.429	29.252	30.099	0					41	16	4	0	0	0	0.0011619	2	9190	9190;9212		166.45	105.09	1	689430000			20449	9635	14713	14822	20063;20064	20063					0.03175957329199264
IATSQNRIY	9	Unmodified	_IATSQNRIY_					0	0	0		nc|ENSG00000215021|Q99623-2|PHB2;ENSG00000215021|ENST00000535923|PHB2;ENST00000537646.5_1_12:7074850-7076486:-|nuORF;ENST00000546111.5_1_12:7074850-7079788:-|nuORF	nc|ENSG00000215021|Q99623-2|PHB2	nc|ENSG00000215021|Q99623-2|PHB2	MULTI-MSMS	A375_MHC_IP_R2	2	533.6871948242188	2	533.288005	1064.56146	-1.4187	-0.00075656	0.026185	1.3964E-05	-1.3925	-0.00074259	533.2880009796614	28.761	1.4544	29.459	29.234	30.688	0.69872					59	28	5	0	0	0	0.0043431	2	9954	9908;9954		191.38	119.46	1	703500000			20450	9635	14713	14822	20065;20066	20066					0.03175957329199264
IATSQNRIY	9	Unmodified	_IATSQNRIY_					0	0	0		nc|ENSG00000215021|Q99623-2|PHB2;ENSG00000215021|ENST00000535923|PHB2;ENST00000537646.5_1_12:7074850-7076486:-|nuORF;ENST00000546111.5_1_12:7074850-7079788:-|nuORF	nc|ENSG00000215021|Q99623-2|PHB2	nc|ENSG00000215021|Q99623-2|PHB2	MULTI-MSMS	A375_MHC_IP_R2	2	1065.966552734375	1	1065.56873	1064.56146	-0.60489	-0.00064455	-0.48438	-0.00051614	-1.0893	-0.0011607	1065.567855392731	28.76	0.39804	29.459	29.283	29.681	0.69872					16	7	3	0	0	0	0.0098859	1	10067	10067		117.76	82.829	1	33641000			20451	9635	14713	14822	20067	20067					0.03175957329199264
IATVGAAIRRK	11	Unmodified	_IATVGAAIRRK_					0	0	0		nc|ENSG00000162129|Q9H078-5|CLPB;nc|ENSG00000162129|Q9H078-3|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB	nc|ENSG00000162129|Q9H078-5|CLPB	nc|ENSG00000162129|Q9H078-5|CLPB	MULTI-SECPEP	A375_MHC_IP_R2	2	386.2889099121094	3	385.915535	1154.72478	-0.18392	-7.0977E-05	0.28897	0.00011152	0.10505	4.0542E-05	385.91559184435846	39.426	0.35516	40.2	40.067	40.422	0.77451					13	6	3	0	0	0	0.99732	1	14598	14598		6.6235	1.2207	1	2783400			20452	6509	14714	14823	20068	20068					0.1536018017088736
IATVVGFVMQR	11	Unmodified	_IATVVGFVMQR_					0	0	0			REV__ENSG00000160200|ENST00000398165|CBS	REV__ENSG00000160200|ENST00000398165|CBS	MSMS	A375_MHC_IP_R1	1	407.66461181640625	3	407.565514	1219.67471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.497	1	45.497	44.997	45.997	0								0	0	0	0.15551	1	15924	15924		17.049	2.0914	1		+		20453	20152	14715	14824	20069	20069					0.07366309450731023
IAVAKLALA	9	Unmodified	_IAVAKLALA_					0	0	0			REV__ENSG00000175485|ENST00000311352|OR52W1	REV__ENSG00000175485|ENST00000311352|OR52W1	MULTI-MSMS	A375_MHC_IP_R2	2	435.6940612792969	2	435.294571	868.574589	-0.24907	-0.00010842	-0.46089	-0.00020062	-0.70995	-0.00030904	435.29433698491476	80.055	0.658	80.8	80.556	81.214	0.74474					16	12	2	0	0	0	0.13491	1	30406	30406		44.407	0	1	3733000	+		20454	21348	14716	14825	20070	20070					0.13504440179212907
IAVATCVLQ	9	Unmodified	_IAVATCVLQ_					0	0	0			REV__ENSG00000008300|ENST00000164024|CELSR3	REV__ENSG00000008300|ENST00000164024|CELSR3	MULTI-MSMS	A375_MHC_IP_R1	1	459.6595764160156	2	459.259871	916.505189	-0.2662	-0.00012225	0.2555	0.00011734	-0.010699	-4.9135E-06	459.2600517465619	59.168	0.56074	59.168	58.836	59.397	0					15	10	2	0	0	0	0.53367	1	21299	21299		18.146	0	1	2049900	+		20455	16171	14717	14826	20071	20071					0.043596131681624684
IAVATCVLQ	9	Unmodified	_IAVATCVLQ_					0	0	0			REV__ENSG00000008300|ENST00000164024|CELSR3	REV__ENSG00000008300|ENST00000164024|CELSR3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	459.259871	916.505189	-0.2662	-0.00012225	0.2555	0.00011734	-0.010699	-4.9135E-06	459.2600517465619	59.168	0.56074	59.168	58.836	59.397	0	0.060647	-2.4118E-05	NaN	18.146	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2049900	+		20456	16171	14717	14826							0.043596131681624684
IAVDEPVEV	9	Unmodified	_IAVDEPVEV_					0	0	0			REV__ENSG00000101542|ENST00000262717|CDH20	REV__ENSG00000101542|ENST00000262717|CDH20	MULTI-MSMS	A375_MHC_IP_R1	1	486.1581726074219	2	485.758215	969.501877	-0.16638	-8.0818E-05	-0.15681	-7.6172E-05	-0.32319	-0.00015699	485.75808404807583	105.15	0.96184	105.15	104.64	105.6	0					41	18	3	0	0	0	0.026461	1	38528	38528		77.984	17.595	1	3891500	+		20457	17175	14718	14827	20072	20072					0.015906415951462805
IAVDEPVEV	9	Unmodified	_IAVDEPVEV_					0	0	0			REV__ENSG00000101542|ENST00000262717|CDH20	REV__ENSG00000101542|ENST00000262717|CDH20	MULTI-SECPEP	A375_MHC_IP_R2	2	486.1582336425781	2	485.758215	969.501877	-0.54534	-0.0002649	-0.15724	-7.6378E-05	-0.70258	-0.00034128	485.7580940651703	104.42	1.2201	105.18	104.65	105.87	0.76308					54	23	4	0	0	0	0.14105	1	39415	39415		60.39	9.5345	1	9137800	+		20458	17175	14718	14827	20073	20073					0.015906415951462805
IAVDEPVEV	9	Unmodified	_IAVDEPVEV_					0	0	0			REV__ENSG00000101542|ENST00000262717|CDH20	REV__ENSG00000101542|ENST00000262717|CDH20	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	485.758215	969.501877	-0.16638	-8.0818E-05	-0.15681	-7.6172E-05	-0.32319	-0.00015699	485.75808404807583	105.15	0.96184	105.15	104.64	105.6	0	-0.016382	2.3937E-07	NaN	77.984	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3891500	+		20459	17175	14718	14827							0.015906415951462805
IAVEPGNQW	9	Unmodified	_IAVEPGNQW_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1;ENST00000506918.1_1_4:155463230-155466996:-|nuORF	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-SECPEP	A375_MHC_IP_R1	1	507.65618896484375	2	507.256174	1012.49779	-0.1929	-9.785E-05	0.56079	0.00028446	0.36789	0.00018661	507.25645010635986	72.111	0.65773	72.111	71.765	72.423	0					25	12	3	0	0	0	0.20567	1	26242	26242		54.774	42.242	1	3464300			20460	7617	14719	14828	20074	20074					-0.007954031079066226
IAVEPGNQW	9	Unmodified	_IAVEPGNQW_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1;ENST00000506918.1_1_4:155463230-155466996:-|nuORF	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-MSMS	A375_MHC_IP_R2	2	507.18658447265625	2	507.256174	1012.49779	-1.0203	-0.00051756	0.6599	0.00033474	-0.36041	-0.00018282	507.25652965486387	71.543	0.70951	72.278	71.756	72.465	0.73421					18	13	2	0	0	0	0.27715	1	27058	27058		32.305	11.852	1	4538300			20461	7617	14719	14828	20075	20075					-0.007954031079066226
IAVEPVKTY	9	Unmodified	_IAVEPVKTY_					0	0	0		nc|ENSG00000156958|Q01415-2|GALK2;ENSG00000156958|ENST00000560031|GALK2;ENST00000559040.1_1_15:49448112-49518881:+|nuORF	nc|ENSG00000156958|Q01415-2|GALK2	nc|ENSG00000156958|Q01415-2|GALK2	MULTI-MSMS	A375_MHC_IP_R1	1	510.69158935546875	2	510.292225	1018.5699	-0.15103	-7.7068E-05	-0.26424	-0.00013484	-0.41527	-0.00021191	510.2919826469621	45.488	0.60552	45.488	45.183	45.789	0					24	11	3	0	0	0	0.012843	1	15890	15890		92.653	33.975	1	13755000			20462	6219	14720	14829	20076	20076					0.06135511245804537
IAVEPVKTY	9	Unmodified	_IAVEPVKTY_					0	0	0		nc|ENSG00000156958|Q01415-2|GALK2;ENSG00000156958|ENST00000560031|GALK2;ENST00000559040.1_1_15:49448112-49518881:+|nuORF	nc|ENSG00000156958|Q01415-2|GALK2	nc|ENSG00000156958|Q01415-2|GALK2	MULTI-SECPEP	A375_MHC_IP_R2	2	510.6918029785156	2	510.292225	1018.5699	-0.86542	-0.00044162	0.043479	2.2187E-05	-0.82194	-0.00041943	510.2921612406178	44.697	0.56129	45.466	45.188	45.75	0.7691					26	10	3	0	0	0	0.10362	1	16670	16670		72.968	34.994	1	15829000			20463	6219	14720	14829	20077	20077					0.06135511245804537
IAVLRGLAY	9	Unmodified	_IAVLRGLAY_					0	0	0		ENSG00000126934|ENST00000262948|MAP2K2;ENST00000597008.5_1_19:4100806-4102439:-|nuORF	ENSG00000126934|ENST00000262948|MAP2K2	ENSG00000126934|ENST00000262948|MAP2K2	MULTI-MSMS	A375_MHC_IP_R1	1	488.702392578125	2	488.302927	974.591301	-0.34267	-0.00016733	-0.29304	-0.00014309	-0.63572	-0.00031042	488.3029080575404	80.069	0.35928	80.069	79.879	80.238	0					11	6	3	0	0	0	0.12592	1	29285	29285		46.021	21.347	1	1578900			20464	4071	14721	14830	20078	20078					0.10298941065184408
IAVSKEGDLKI	11	Unmodified	_IAVSKEGDLKI_					0	0	0			REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	587.2474975585938	2	586.847896	1171.68124	-0.53586	-0.00031447	0.33404	0.00019603	-0.20182	-0.00011844	586.8479867661396	64.689	0.40697	65.429	65.208	65.615	0.74022					15	7	3	0	0	0	0.72748	1	24533	24533		37.075	7.2341	1	3113600	+		20465	28607	14722	14831	20079	20079					0.10226525883103932
IAVSLPRSEKF	11	Unmodified	_IAVSLPRSEKF_					0	0	0		SGSM3|p.L107F|1|0.24|ENSG00000100359|chr22:40404408-40404408|C/T|missense_variant	SGSM3|p.L107F|1|0.24|ENSG00000100359|chr22:40404408-40404408|C/T|missense_variant	SGSM3|p.L107F|1|0.24|ENSG00000100359|chr22:40404408-40404408|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	416.9630126953125	3	416.243317	1245.70812	0.66565	0.00027707	-0.96397	-0.00040125	-0.29832	-0.00012417	416.2427758571132	38.969	0.4574	38.969	38.78	39.238	0					17	8	3	0	0	0	0.72909	1	13219	13219		9.7643	3.1408	1	3405400			20466	29150	14723	14832	20080	20080					0.09509634494247621
IAVTKGRGVK	10	Unmodified	_IAVTKGRGVK_					0	0	0		ENSG00000140986|ENST00000268661|RPL3L	ENSG00000140986|ENST00000268661|RPL3L	ENSG00000140986|ENST00000268661|RPL3L	MULTI-SECPEP	A375_MHC_IP_R1	1	514.6640625	2	514.832383	1027.65021	-0.51043	-0.00026279	-0.24923	-0.00012831	-0.75967	-0.0003911	514.8321910509082	59.422	0.40598	59.422	59.245	59.651	0					14	7	2	0	0	0	0.90513	1	21382	21382		8.1555	4.559	1	5496900			20467	5201	14724	14833	20081	20081					0.13749417359508698
IAVWTPRGV	9	Unmodified	_IAVWTPRGV_					0	0	0		ENST00000607455.1_1_10:31607508-31607900:-|nuORF	ENST00000607455.1_1_10:31607508-31607900:-|nuORF	ENST00000607455.1_1_10:31607508-31607900:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	499.68695068359375	2	499.792727	997.5709	-0.45161	-0.00022571	-1.2626	-0.00063105	-1.7142	-0.00085677	499.791506964271	79.337	0.6073	80.081	79.642	80.249	0.74474					16	11	2	0	0	0	0.55359	1	30042	30042		10.824	0.75	1	1712600			20468	13920	14725	14834	20082	20082					0.07201770405379193
IAVYCDYGMVL	11	Unmodified	_IAVYCDYGMVL_					0	0	0			REV__OR10H4|p.R123C|2|0.24|ENSG00000176231|chr19:15949374-15949374|C/T|missense_variant	REV__OR10H4|p.R123C|2|0.24|ENSG00000176231|chr19:15949374-15949374|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	415.6539306640625	3	416.199732	1245.57737	-0.066248	-2.7573E-05	0.8799	0.00036621	0.81365	0.00033864	416.53444305861166	67.424	0.40901	67.424	67.194	67.603	0					12	7	2	0	0	0	0.98977	1	24412	24412		0.50596	0	1	1800000	+		20469	27649	14726	14835	20083	20083					-0.03559840540447112
IAWEWLGESEL	11	Unmodified	_IAWEWLGESEL_					0	0	0			REV__nc|ENSG00000110713|P52948-6|NUP98	REV__nc|ENSG00000110713|P52948-6|NUP98	MULTI-SECPEP	A375_MHC_IP_R2	2	445.63482666015625	3	444.887199	1331.63977	-0.48428	-0.00021545	-0.82019	-0.00036489	-1.3045	-0.00058034	444.88645972846405	50.762	0.30407	51.516	51.311	51.615	0.75406					6	5	2	0	0	0	1.001	1	19035	19035		1.4551	0	1	861750	+		20470	17637	14727	14836	20084	20084					-0.012786548762278471
IAYIRDLAL	9	Unmodified	_IAYIRDLAL_					0	0	0		ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	MULTI-MSMS	A375_MHC_IP_R1	1	524.712890625	2	524.313492	1046.61243	-0.4894	-0.0002566	0.29711	0.00015578	-0.19229	-0.00010082	524.3135139158227	91.732	0.50418	91.732	91.452	91.956	0					22	9	3	0	0	0	0.084766	1	33688	33688		53.404	11.448	1	4722000			20471	1047	14728	14837	20085	20085					0.09098906374015314
IAYIRDLAL	9	Unmodified	_IAYIRDLAL_					0	0	0		ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	MULTI-MSMS	A375_MHC_IP_R2	2	524.7129516601562	2	524.313492	1046.61243	-0.41742	-0.00021886	-0.80306	-0.00042106	-1.2205	-0.00063992	524.3129891627068	90.89	0.70966	91.624	91.311	92.021	0.7345					24	13	3	0	0	0	0.16945	1	34632	34632		40.239	0.28951	1	4422100			20472	1047	14728	14837	20086	20086					0.09098906374015314
IAYIRDLAL	9	Unmodified	_IAYIRDLAL_					0	0	0		ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	524.313492	1046.61243	-0.4894	-0.0002566	0.29711	0.00015578	-0.19229	-0.00010082	524.3135139158227	91.732	0.50418	91.732	91.452	91.956	0	0.053957	0.00073702	NaN	53.404	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4722000			20473	1047	14728	14837							0.09098906374015314
IAYPLKIQKI	10	Unmodified	_IAYPLKIQKI_					0	0	0		tr|U7SYX6|U7SYX6_FUSNUIron(III)transportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00944PE=4SV=1	tr|U7SYX6|U7SYX6_FUSNUIron(III)transportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00944PE=4SV=1	tr|U7SYX6|U7SYX6_FUSNUIron(III)transportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00944PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	396.9840087890625	3	396.256787	1185.74853	0.02346	9.2961E-06	-2.0064	-0.00079505	-1.9829	-0.00078575	396.25585775520716	62.907	0.25552	62.907	62.762	63.018	0					6	4	2	0	0	0	0.92603	1	22701	22701		8.9762	0	1	469870			20474	29848	14729	14838	20087	20087					0.1630860088469035
IAYPSLREA	9	Unmodified	_IAYPSLREA_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;MAGEA4|p.R299C|1|0.6|ENSG00000147381|chrX:151924559-151924559|C/T|missense_variant	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-MSMS	A375_MHC_IP_R2	2	510.67919921875	2	510.279649	1018.54475	-0.96869	-0.0004943	-0.84235	-0.00042983	-1.811	-0.00092413	510.2796331087279	51.548	1.1697	52.3	51.813	52.983	0.75225					60	22	5	0	0	0	0.094655	1	19324	19324		51.63	1.6968	1	29935000			20475	520	14730	14839	20088	20088					0.03621456443227089
IAYSISTNP	9	Unmodified	_IAYSISTNP_					0	0	0			REV__SLC7A14|p.P286S|1|0.07|ENSG00000013293|chr3:170486272-170486272|G/A|missense_variant	REV__SLC7A14|p.P286S|1|0.07|ENSG00000013293|chr3:170486272-170486272|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	482.6234436035156	2	483.250557	964.486562	-0.40185	-0.0001942	-0.81033	-0.00039159	-1.2122	-0.00058579	483.2503517511403	58.608	0.40588	58.608	58.43	58.836	0					11	7	2	0	0	0	0.76187	1	21014	21014		3.9444	0	1	803540	+		20476	28003	14731	14840	20089	20089					0.002897747979432097
ICCFDSFEY	9	Unmodified	_ICCFDSFEY_					0	0	0		ENSG00000270885|ENST00000603017|RASL10B	ENSG00000270885|ENST00000603017|RASL10B	ENSG00000270885|ENST00000603017|RASL10B	MULTI-MSMS	A375_MHC_IP_R1	1	563.6998291015625	2	563.714636	1125.41472	-0.37257	-0.00021002	0.45793	0.00025814	0.085356	4.8116E-05	564.2157881575649	81.714	0.15108	81.714	81.607	81.758	0					4	2	2	0	0	0	0.6898	1	29876	29876		7.9102	0	1	936930			20477	9983	14732	14841	20090	20090					-0.1429722394241253
ICEEWHREK	9	Unmodified	_ICEEWHREK_					0	0	0		ENST00000336237.10_1_2:37474662-37474707:+|nuORF	ENST00000336237.10_1_2:37474662-37474707:+|nuORF	ENST00000336237.10_1_2:37474662-37474707:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	410.59503173828125	3	410.52924	1228.56589	-0.29804	-0.00012235	1.4546	0.00059717	1.1566	0.00047482	410.5297573513702	19.914	0.25241	20.524	20.399	20.651	0.61029					7	4	2	0	0	0	0.77396	1	6186	6186		3.8763	0	1	951170			20478	10813	14733	14842	20091	20091					-0.039249015195764514
ICFKEKIRNRY	11	Unmodified	_ICFKEKIRNRY_					0	0	0			REV__ENSG00000158077|ENST00000299481|NLRP14	REV__ENSG00000158077|ENST00000299481|NLRP14	MSMS	A375_MHC_IP_R1	1	490.68212890625	3	490.606373	1468.79729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.506	1	48.506	48.006	49.006	0								0	0	0	0.16152	1	17116	17116		5.8681	3.6154	1		+		20479	20060	14734	14843	20092	20092					0.08164146182161858
ICFQRIRGSP	10	Unmodified	_ICFQRIRGSP_					0	0	0		ENST00000565296.5_1_15:43481445-43482264:+|nuORF	ENST00000565296.5_1_15:43481445-43482264:+|nuORF	ENST00000565296.5_1_15:43481445-43482264:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	392.2799377441406	3	392.881725	1175.62335	-0.20087	-7.8919E-05	4.4488	0.0017479	4.2479	0.0016689	392.88385188090996	30.745	0.20287	30.745	30.603	30.806	0					5	3	2	0	0	0	0.91932	1	9764	9764		15.739	4.8397	1	628870			20480	13544	14735	14844	20093	20093					0.04255985476697788
ICFTVNTCAFF	11	Unmodified	_ICFTVNTCAFF_					0	0	0			REV__ENST00000462470.1_1_10:32666322-32667533:-|nuORF	REV__ENST00000462470.1_1_10:32666322-32667533:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	633.150634765625	2	633.288302	1264.56205	-0.719	-0.00045533	-0.54782	-0.00034693	-1.2668	-0.00080226	633.2875252246056	91.581	0.9097	91.581	90.997	91.906	0					31	17	3	0	0	0	0.82225	1	33630	33630		29.082	0	1	2662900	+		20481	24989	14736	14845	20094	20094					-0.059647073376481785
ICHMRSGLW	9	Unmodified	_ICHMRSGLW_					0	0	0			REV__ENST00000438393.5_1_22:50167190-50167259:-|nuORF	REV__ENST00000438393.5_1_22:50167190-50167259:-|nuORF	MSMS	A375_MHC_IP_R2	2	551.7116088867188	2	551.767871	1101.52119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.204	1	94.949	94.449	95.449	0.74474								0	0	0	0.15486	1	35804	35804		13.508	4.1248	1		+		20482	24782	14737	14846	20095	20095					-0.025510038665743195
ICHSADAESY	10	Unmodified	_ICHSADAESY_					0	0	0			REV__ENST00000508662.5_1_5:149618053-149669203:-|nuORF	REV__ENST00000508662.5_1_5:149618053-149669203:-|nuORF	MSMS	A375_MHC_IP_R1	1	548.1610107421875	2	548.224214	1094.43387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.85	1	106.85	106.35	107.35	0								0	0	0	0.15308	1	39214	39214		10.824	1.4765	1		+		20483	16432	14738	14847	20096	20096					-0.10956551327171837
ICLSDNDTFYD	11	Unmodified	_ICLSDNDTFYD_					0	0	0		C1R|p.P579S|1|0.38|ENSG00000159403|chr12:7080915-7080915|G/A|missense_variant	C1R|p.P579S|1|0.38|ENSG00000159403|chr12:7080915-7080915|G/A|missense_variant	C1R|p.P579S|1|0.38|ENSG00000159403|chr12:7080915-7080915|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	653.2781372070312	2	653.268818	1304.52308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.4	1	142.43	141.93	142.93	0.030731								0	0	0	0.16302	1	55670	55670		2.9952	0	1				20484	264	14739	14848	20097	20097					-0.11699761158320143
ICPEKLRYK	9	Unmodified	_ICPEKLRYK_					0	0	0		ZNF599|p.S151R|1|0.32|ENSG00000153896|chr19:34760348-34760348|A/C|missense_variant	ZNF599|p.S151R|1|0.32|ENSG00000153896|chr19:34760348-34760348|A/C|missense_variant	ZNF599|p.S151R|1|0.32|ENSG00000153896|chr19:34760348-34760348|A/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	383.9439697265625	3	383.886476	1148.6376	0.15334	5.8865E-05	-0.8097	-0.00031083	-0.65636	-0.00025197	383.88619581726886	32.637	3.0422	32.637	30.908	33.95	0					114	59	3	0	0	0	0.55471	1	10116	10116		16.566	1.6087	1	15944000			20485	30232	14740	14849	20098	20098					0.06922637904949624
ICRQCRLSQVK	11	Unmodified	_ICRQCRLSQVK_					0	0	0			REV__ENST00000378024.8_2_11:62293361-62293448:-|nuORF	REV__ENST00000378024.8_2_11:62293361-62293448:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	444.9844970703125	3	445.244558	1332.71184	-0.35414	-0.00015768	-0.97665	-0.00043485	-1.3308	-0.00059253	445.24394527038294	131.66	0.60684	131.85	131.65	132.25	0.18954					15	11	2	0	0	0	0.99916	1	51801	51801		4.4062	2.1534	1	1643100	+		20486	24170	14741	14850	20099	20099					0.05879657724813114
ICTFAGTD	8	Unmodified	_ICTFAGTD_					0	0	0			REV__ENSG00000165379|ENST00000298119|LRFN5	REV__ENSG00000165379|ENST00000298119|LRFN5	MULTI-MSMS	A375_MHC_IP_R1	1	828.3117065429688	1	827.360381	826.353105	-0.4011	-0.00033185	0.78525	0.00064969	0.38416	0.00031784	827.3609369643386	89.683	0.606	89.683	89.375	89.981	0					21	11	2	0	0	0	0.69583	1	33003	33003		36.044	11.37	1	4568700	+		20487	20578	14742	14851	20100	20100					-0.06701787579402207
ICTFAGTD	8	Unmodified	_ICTFAGTD_					0	0	0			REV__ENSG00000165379|ENST00000298119|LRFN5	REV__ENSG00000165379|ENST00000298119|LRFN5	MULTI-MSMS	A375_MHC_IP_R2	2	828.31103515625	1	827.360381	826.353105	-0.7089	-0.00058651	1.3903	0.0011503	0.68145	0.00056381	827.3610939818196	88.978	0.7045	89.71	89.431	90.135	0.7318					26	13	3	0	0	0	0.69583	1	33922	33922		36.044	11.37	1	5080400	+		20488	20578	14742	14851	20101	20101					-0.06701787579402207
ICTFAGTD	8	Unmodified	_ICTFAGTD_					0	0	0			REV__ENSG00000165379|ENST00000298119|LRFN5	REV__ENSG00000165379|ENST00000298119|LRFN5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	827.360381	826.353105	-0.7089	-0.00058651	1.3903	0.0011503	0.68145	0.00056381	827.3610939818196	88.978	0.7045	89.71	89.431	90.135	0.7318	0.013534	0.00027512	NaN	36.044	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5080400	+		20489	20578	14742	14851							-0.06701787579402207
ICVADPFEVT	10	Unmodified	_ICVADPFEVT_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-SECPEP	A375_MHC_IP_R1	1	546.7138061523438	2	547.26535	1092.51615	-0.31916	-0.00017466	-2.5111	-0.0013742	-2.8302	-0.0015489	547.263332641679	43.044	0.76342	43.044	42.587	43.351	0					24	14	3	0	0	0	0.8125	1	14910	14910		24.021	8.1734	1	1274800			20490	3981	14743	14852	20102	20102					-0.026410292482069053
ICYLDMLM	8	Unmodified	_ICYLDMLM_					0	0	0		nc|ENSG00000185420|Q9H7B4-3|SMYD3;ENSG00000185420|ENST00000490107|SMYD3;ENST00000366516.5_1_1:245912867-246093251:-|nuORF;nc|ENSG00000185420|Q9H7B4-2|SMYD3;ENST00000366517.5_1_1:245912867-246116553:-|nuORF	nc|ENSG00000185420|Q9H7B4-3|SMYD3	nc|ENSG00000185420|Q9H7B4-3|SMYD3	MULTI-SECPEP	A375_MHC_IP_R1	1	500.6353454589844	2	501.228867	1000.44318	-0.29437	-0.00014755	0.63621	0.00031889	0.34184	0.00017134	501.22914211869534	43.361	1.4784	43.361	42.891	44.37	0					30	28	2	0	0	0	0.97144	1	15394	15394		9.3474	7.2877	1	1275000			20491	8665	14744	14853	20103	20103					-0.05702197566836276
ICYLDMLM	8	Unmodified	_ICYLDMLM_					0	0	0		nc|ENSG00000185420|Q9H7B4-3|SMYD3;ENSG00000185420|ENST00000490107|SMYD3;ENST00000366516.5_1_1:245912867-246093251:-|nuORF;nc|ENSG00000185420|Q9H7B4-2|SMYD3;ENST00000366517.5_1_1:245912867-246116553:-|nuORF	nc|ENSG00000185420|Q9H7B4-3|SMYD3	nc|ENSG00000185420|Q9H7B4-3|SMYD3	MULTI-MATCH	A375_MHC_IP_R2	2		2	501.228867	1000.44318	-0.50754	-0.00025439	0.32344	0.00016212	-0.18409	-9.2273E-05	501.229056604116	42.926	0.70972	43.698	43.369	44.079	0.7724	0.16843	-0.00015849	NaN	9.3474	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	973480			20492	8665	14744	14853							-0.05702197566836276
IDAAKGQYKKF	11	Unmodified	_IDAAKGQYKKF_					0	0	0		tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	423.9712219238281	3	423.571434	1267.69247	0.16075	6.8089E-05	-0.13957	-5.9117E-05	0.021183	8.9723E-06	423.57135837430985	42.901	0.40568	42.901	42.689	43.095	0					23	7	4	0	0	0	0.50979	1	14875	14875		30.354	12.491	1	8709600			20493	30038	14745	14854	20104	20104					0.06933347977224003
IDAAKGQYKKF	11	Unmodified	_IDAAKGQYKKF_					0	0	0		tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	424.3055419921875	3	423.571434	1267.69247	-0.094012	-3.9821E-05	-0.19736	-8.3595E-05	-0.29137	-0.00012342	423.5712779831284	41.989	0.46059	42.764	42.555	43.016	0.77451					21	8	3	0	0	0	0.50979	1	15622	15622		30.354	18.18	1	5560100			20494	30038	14745	14854	20105	20105					0.06933347977224003
IDAAKGQYKKF	11	Unmodified	_IDAAKGQYKKF_					0	0	0		tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	423.571434	1267.69247	0.16075	6.8089E-05	-0.13957	-5.9117E-05	0.021183	8.9723E-06	423.57135837430985	42.901	0.40568	42.901	42.689	43.095	0	0.06838	4.0856E-05	NaN	30.354	23	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8709600			20495	30038	14745	14854							0.06933347977224003
IDAAKGQYKKF	11	Unmodified	_IDAAKGQYKKF_					0	0	0		tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	423.571434	1267.69247	-0.094012	-3.9821E-05	-0.19736	-8.3595E-05	-0.29137	-0.00012342	423.5712779831284	41.989	0.46059	42.764	42.555	43.016	0.77451	-0.06838	-3.2578E-05	NaN	30.354	21	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5560100			20496	30038	14745	14854							0.06933347977224003
IDAEARTLCE	10	Unmodified	_IDAEARTLCE_					0	0	0			REV__ENSG00000111799|ENST00000322507|COL12A1	REV__ENSG00000111799|ENST00000322507|COL12A1	MULTI-MSMS	A375_MHC_IP_R1	1	561.2034301757812	2	560.768788	1119.52302	-0.495	-0.00027758	1.0797	0.00060544	0.58465	0.00032785	560.7692612932439	75.754	0.60408	75.754	75.413	76.017	0					25	11	3	0	0	0	0.54492	1	27577	27577		24.991	2.2547	1	7157000	+		20497	17695	14746	14855	20106	20106					-0.03195716367645218
IDAEDDLFEY	10	Unmodified	_IDAEDDLFEY_					0	0	0		tr|U7SU22|U7SU22_FUSNUFlagellarmotorswitchproteinFliN-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01070PE=4SV=1	tr|U7SU22|U7SU22_FUSNUFlagellarmotorswitchproteinFliN-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01070PE=4SV=1	tr|U7SU22|U7SU22_FUSNUFlagellarmotorswitchproteinFliN-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01070PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	615.7132568359375	2	615.264059	1228.51356	-0.28016	-0.00017237	0.40158	0.00024707	0.12142	7.4703E-05	615.7660880877312	31.642	0.40593	31.642	31.363	31.769	0					10	7	2	0	0	0	0.71866	1	10063	10063		3.9444	0	1	2246800			20498	29734	14747	14856	20107	20107					-0.09155206172181352
IDAEDDLFEY	10	Unmodified	_IDAEDDLFEY_					0	0	0		tr|U7SU22|U7SU22_FUSNUFlagellarmotorswitchproteinFliN-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01070PE=4SV=1	tr|U7SU22|U7SU22_FUSNUFlagellarmotorswitchproteinFliN-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01070PE=4SV=1	tr|U7SU22|U7SU22_FUSNUFlagellarmotorswitchproteinFliN-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01070PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	615.264059	1228.51356	-0.63915	-0.00039325	0.20967	0.000129	-0.42948	-0.00026424	615.264041158986	31.051	0.30415	31.769	31.567	31.872	0.71857	0.063707	-8.5703E-05	NaN	3.9444	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1234600			20499	29734	14747	14856							-0.09155206172181352
IDALEASI	8	Unmodified	_IDALEASI_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MSMS	A375_MHC_IP_R2	2	416.1527099609375	2	416.226551	830.438549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.475	1	51.229	50.729	51.729	0.75406								0	0	0	0.16876	1	18983	18983		28.487	5.3384	1				20500	5332	14748	14857	20108	20108					0.016547008778957206
IDALSRADAL	10	Unmodified	_IDALSRADAL_					0	0	0			REV__ENST00000556321.1_1_14:58714534-58724570:+|nuORF	REV__ENST00000556321.1_1_14:58714534-58724570:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	523.1876831054688	2	522.787838	1043.56112	-0.8476	-0.00044311	-0.58263	-0.00030459	-1.4302	-0.00074771	522.7879251724507	49.644	0.50802	50.399	50.144	50.652	0.75549					19	9	3	0	0	0	0.59108	1	18689	18689		21.537	0	1	1815800	+		20501	17101	14749	14858	20109	20109					0.04108537609317864
IDAMGKNL	8	Unmodified	_IDAMGKNL_					0	0	0			REV__ENST00000401578.2_1_6:80776237-80776996:-|nuORF	REV__ENST00000401578.2_1_6:80776237-80776996:-|nuORF	MSMS	A375_MHC_IP_R1	1	431.2186584472656	2	431.228571	860.442588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.96	1	141.96	141.46	142.46	0								0	0	0	0.16876	1	54474	54474		2.5775	0	1		+		20502	17502	14750	14859	20110	20110					0.006784670999536502
IDCFHWLF	8	Unmodified	_IDCFHWLF_					0	0	0			REV__ENST00000326402.8_2_11:92887329-92895874:-|nuORF	REV__ENST00000326402.8_2_11:92887329-92895874:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	540.1631469726562	2	540.752213	1079.48987	-0.5126	-0.00027719	-1.5892	-0.00085934	-2.1018	-0.0011365	540.751285486095	44.189	0.40896	44.189	43.909	44.318	0					12	7	2	0	0	0	0.96296	1	15332	15332		5.7604	0	1	730130	+		20503	23603	14751	14860	20111	20111					-0.04669253629049308
IDCLFNYMY	9	Unmodified	_IDCLFNYMY_					0	0	0		PDK3|p.R299C|1|0.18|ENSG00000067992|chrX:24528118-24528118|C/T|missense_variant	PDK3|p.R299C|1|0.18|ENSG00000067992|chrX:24528118-24528118|C/T|missense_variant	PDK3|p.R299C|1|0.18|ENSG00000067992|chrX:24528118-24528118|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	590.7216796875	2	591.253928	1180.4933	-0.50601	-0.00029918	-0.8906	-0.00052657	-1.3966	-0.00082575	591.7550448334053	73.381	0.30547	74.116	73.887	74.192	0.73541					6	5	2	0	0	0	0.75466	1	27835	27835		12.532	6.7711	1	993490			20504	15152	14752	14861	20112	20112					-0.08972371637355536
IDCMQFWFDFY	11	Unmodified	_IDCMQFWFDFY_					0	0	0			REV__UGT2B28|p.M229I|1|0.69|ENSG00000135226|chr4:69281187-69281187|G/A|missense_variant	REV__UGT2B28|p.M229I|1|0.69|ENSG00000135226|chr4:69281187-69281187|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	505.6085510253906	3	505.542158	1513.60464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.888	1	36.888	36.388	37.388	0								0	0	0	0.16297	1	12389	12389		1.3296	0	1		+		20505	28944	14753	14862	20113	20113					-0.1316135700005816
IDCNHLGTEC	10	Unmodified	_IDCNHLGTEC_					0	0	0			REV__ENSG00000116962|ENST00000264187|NID1	REV__ENSG00000116962|ENST00000264187|NID1	MULTI-MSMS	A375_MHC_IP_R2	2	553.1248779296875	2	552.726066	1103.43758	-1.1859	-0.00065551	-1.1735	-0.00064862	-2.3594	-0.0013041	552.7254008563604	59.292	0.35252	60.039	59.896	60.249	0.74714					10	6	2	0	0	0	0.63639	1	22466	22466		18.146	1.2041	1	1239400	+		20506	17982	14754	14863	20114	20114					-0.11000204824949833
IDCSYRIIN	9	Unmodified	_IDCSYRIIN_					0	0	0			REV__ENST00000503190.1_1_4:169317058-169322080:-|nuORF	REV__ENST00000503190.1_1_4:169317058-169322080:-|nuORF	MSMS	A375_MHC_IP_R2	2	548.6907958984375	2	548.776416	1095.53828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.67	1	101.43	100.93	101.93	0.76278								0	0	0	0.14169	1	38166	38166		29.082	8.628	1		+		20507	25512	14755	14864	20115	20115					-0.005668047797826148
IDCYITQQY	9	Unmodified	_IDCYITQQY_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	A375_MHC_IP_R1	1	573.6530151367188	2	573.760432	1145.50631	-0.31883	-0.00018293	-2.6995	-0.0015489	-3.0184	-0.0017318	573.7603316226305	89.956	0.15119	89.956	89.83	89.981	0					4	2	2	0	0	0	0.75466	1	33045	33045		7.9102	0.62092	1	1314200	+		20508	20029	14756	14865	20116	20116					-0.060622172536113794
IDDACTYNDYG	11	Unmodified	_IDDACTYNDYG_					0	0	0			REV__tr|U7T4W2|U7T4W2_FUSNUbeta-lactamaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00215PE=3SV=1	REV__tr|U7T4W2|U7T4W2_FUSNUbeta-lactamaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00215PE=3SV=1	MSMS	A375_MHC_IP_R2	2	625.1956176757812	2	625.237518	1248.46048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.063	1	92.802	92.302	93.302	0.73902								0	0	0	0.16297	1	35013	35013		3.2813	0.28607	1		+		20509	28806	14757	14866	20117	20117					-0.15380907226494855
IDDALGAQY	9	Unmodified	_IDDALGAQY_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	A375_MHC_IP_R1	1	483.63201904296875	2	483.232364	964.450176	-0.28952	-0.00013991	-0.018039	-8.7172E-06	-0.30756	-0.00014862	483.2323216875515	33.972	0.8075	33.972	33.597	34.405	0					44	15	5	0	0	0	0.050162	1	11063	11063		64.236	6.765	1	65229000	+		20510	16747	14758	14867	20118	20118					-0.033471020987576594
IDDALGAQY	9	Unmodified	_IDDALGAQY_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	A375_MHC_IP_R2	2	483.6321716308594	2	483.232364	964.450176	-0.87646	-0.00042353	0.2432	0.00011752	-0.63325	-0.00030601	483.23243961981746	33.317	0.86235	34.069	33.789	34.651	0.75225					50	16	5	0	0	0	0.050162	2	11872	11872;11944		64.236	6.765	1	102640000	+		20511	16747	14758	14867	20119;20120	20119					-0.033471020987576594
IDDALGAQY	9	Unmodified	_IDDALGAQY_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	483.232364	964.450176	-0.87646	-0.00042353	0.2432	0.00011752	-0.63325	-0.00030601	483.23243961981746	33.317	0.86235	34.069	33.789	34.651	0.75225	0.048253	0.00014817	NaN	64.236	50	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102640000	+		20512	16747	14758	14867							-0.033471020987576594
IDDCCCEDKY	10	Unmodified	_IDDCCCEDKY_					0	0	0			REV__tr|U7T6G7|U7T6G7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00229PE=4SV=1	REV__tr|U7T6G7|U7T6G7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00229PE=4SV=1	MSMS	A375_MHC_IP_R2	2	603.6682739257812	2	603.709224	1205.4039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.259	1	97.009	96.509	97.509	0.75045								0	0	0	0.1552	1	36550	36550		3.9444	0.3479	1		+		20513	28860	14759	14868	20121	20121					-0.19058994379020078
IDDDDDDDS	9	Unmodified	_IDDDDDDDS_					0	0	0			REV__ENSG00000173064|ENST00000682272|HECTD4	REV__ENSG00000173064|ENST00000682272|HECTD4	MSMS	A375_MHC_IP_R2	2	512.6943359375	2	512.664906	1023.31526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.693	1	84.433	83.933	84.933	0.73962								0	0	0	0.15486	1	31813	31813		2.0598	1.2661	1		+		20514	21191	14760	14869	20122	20122					-0.19546671821842665
IDDEDDEDDTW	11	Unmodified	_IDDEDDEDDTW_					0	0	0			REV__nc|ENSG00000196104|Q9BQ16-7|SPOCK3	REV__nc|ENSG00000196104|Q9BQ16-7|SPOCK3	MSMS	A375_MHC_IP_R2	2	684.6025390625	2	684.241509	1366.46846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.78	1	106.54	106.04	107.04	0.75977								0	0	0	0.16331	1	39998	39998		1.4819	0	1		+		20515	22158	14761	14870	20123	20123					-0.20011101496038464
IDDEDDSTF	9	Unmodified	_IDDEDDSTF_					0	0	0		nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9	nc|ENSG00000117859|Q96SU4-7|OSBPL9	nc|ENSG00000117859|Q96SU4-7|OSBPL9	MSMS	A375_MHC_IP_R2	2	528.67333984375	2	528.703834	1055.39311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.448	1	97.203	96.703	97.703	0.75586								0	0	0	0.15486	1	36619	36619		7.2892	0.93513	1				20516	3514	14762	14871	20124	20124					-0.13236614165816718
IDDEDMNSFN	10	Unmodified	_IDDEDMNSFN_					0	0	0			REV__ENSG00000153922|ENST00000614616|CHD1	REV__ENSG00000153922|ENST00000614616|CHD1	MULTI-MSMS	A375_MHC_IP_R1	1	600.6304321289062	2	600.229693	1198.44483	-0.5393	-0.0003237	0.94548	0.00056751	0.40618	0.0002438	600.2306316576228	66.006	0.60936	66.006	65.717	66.326	0					27	11	3	0	0	0	0.69306	1	23886	23886		13.906	0.86358	1	4301700	+		20517	19855	14763	14872	20125	20125					-0.14645193743535856
IDDIHFDDF	9	Unmodified	_IDDIHFDDF_					0	0	0		ENST00000497003.5_1_2:178552959-178791632:-|nuORF;nc|ENSG00000128655|Q9HCR9-3|PDE11A;nc|ENSG00000128655|Q9HCR9-2|PDE11A;ENSG00000128655|ENST00000286063|PDE11A;nc|ENSG00000128655|Q9HCR9-4|PDE11A	ENST00000497003.5_1_2:178552959-178791632:-|nuORF	ENST00000497003.5_1_2:178552959-178791632:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	569.1680908203125	2	568.748379	1135.4822	-0.70483	-0.00040087	-0.074931	-4.2617E-05	-0.77976	-0.00044349	568.748476989029	57.363	0.61179	58.112	57.865	58.477	0.74894					14	11	2	0	0	0	0.58047	1	21687	21687		15.847	4.2069	1	990310			20518	4157	14764	14873	20126	20126					-0.08011734415617866
IDDKKSRLHY	10	Unmodified	_IDDKKSRLHY_					0	0	0			REV__ENSG00000088325|ENST00000300403|TPX2	REV__ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	A375_MHC_IP_R2	2	425.9555969238281	3	425.566571	1273.67788	-0.46815	-0.00019923	0.30361	0.00012921	-0.16454	-7.0022E-05	425.9006569238847	71.659	0.75887	72.393	72.061	72.82	0.73421					41	14	4	0	0	0	0.70027	1	27100	27100		12.175	0.54338	1	7130300	+		20519	16883	14765	14874	20127	20127					0.05199275829113503
IDDMDDDF	8	Unmodified	_IDDMDDDF_					0	0	0			REV__nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	REV__nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	MULTI-SECPEP	A375_MHC_IP_R1	1	492.6813659667969	2	493.176398	984.338242	-0.33102	-0.00016325	0.45892	0.00022633	0.12791	6.3081E-05	493.1766508968156	59.548	0.50771	59.548	59.194	59.701	0					15	9	2	0	0	0	0.972	1	21293	21293		2.5775	2.5775	1	998180	+		20520	17016	14766	14875	20128	20128					-0.1545532423806435
IDDMDDDF	8	Unmodified	_IDDMDDDF_					0	0	0			REV__nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	REV__nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	MULTI-MSMS	A375_MHC_IP_R2	2	493.1204833984375	2	493.176398	984.338242	-0.87388	-0.00043098	0.65911	0.00032506	-0.21477	-0.00010592	493.1767351507078	58.835	0.55933	59.582	59.286	59.845	0.74714					13	10	2	0	0	0	0.77603	1	22155	22155		9.3474	3.587	1	1657300	+		20521	17016	14766	14875	20129	20129					-0.1545532423806435
IDDMDDDF	8	Unmodified	_IDDMDDDF_					0	0	0			REV__nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	REV__nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	493.176398	984.338242	-0.87388	-0.00043098	0.65911	0.00032506	-0.21477	-0.00010592	493.1767351507078	58.835	0.55933	59.582	59.286	59.845	0.74714	0.017192	9.8364E-05	NaN	9.3474	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1657300	+		20522	17016	14766	14875							-0.1545532423806435
IDDNEYACL	9	Unmodified	_IDDNEYACL_					0	0	0		nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	MSMS	A375_MHC_IP_R2	2	528.1650390625	2	528.221139	1054.42773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.149	1	64.89	64.39	65.39	0.74022								0	0	0	0.15486	1	24324	24324		12.532	0	1				20523	6875	14767	14876	20130	20130					-0.09731069558688432
IDDNHGLFF	9	Unmodified	_IDDNHGLFF_					0	0	0			REV__nc|ENSG00000214595|Q6ZMW3-2|EML6	REV__nc|ENSG00000214595|Q6ZMW3-2|EML6	MULTI-SECPEP	A375_MHC_IP_R2	2	538.6401977539062	2	539.253631	1076.49271	-0.85736	-0.00046234	0.96739	0.00052167	0.11003	5.9332E-05	539.7556830297464	77.089	0.30103	77.832	77.657	77.958	0.74293					7	5	2	0	0	0	0.62767	1	29231	29231		23.148	2.2772	1	565650	+		20524	27492	14768	14877	20131	20131					-0.04247706970522813
IDDNTFHY	8	Unmodified	_IDDNTFHY_					0	0	0			REV__tr|U7SMB6|U7SMB6_FUSNUdTDP-4-dehydrorhamnosereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01944PE=3SV=1	REV__tr|U7SMB6|U7SMB6_FUSNUdTDP-4-dehydrorhamnosereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01944PE=3SV=1	MSMS	A375_MHC_IP_R2	2	512.672607421875	2	512.722164	1023.42977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.705	1	44.474	43.974	44.974	0.7691								0	0	0	0.16876	1	16290	16290		13.508	4.1248	1		+		20525	28298	14769	14878	20132	20132					-0.08100272758576921
IDDNTFHY	8	Unmodified	_IDDNTFHY_					0	0	0			REV__tr|U7SMB6|U7SMB6_FUSNUdTDP-4-dehydrorhamnosereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01944PE=3SV=1	REV__tr|U7SMB6|U7SMB6_FUSNUdTDP-4-dehydrorhamnosereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01944PE=3SV=1	MSMS	A375_MHC_IP_R2	2	512.6904907226562	2	512.722164	1023.42977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.515	1	54.266	53.766	54.766	0.75105								0	0	0	0.16876	1	20197	20197		8.5933	1.304	1		+		20526	28298	14769	14878	20133	20133					-0.08100272758576921
IDDPVELNET	10	Unmodified	_IDDPVELNET_					0	0	0			REV__nc|ENSG00000115355|Q3V6T2-5|CCDC88A	REV__nc|ENSG00000115355|Q3V6T2-5|CCDC88A	MULTI-MSMS	A375_MHC_IP_R2	2	573.1729736328125	2	572.772051	1143.52955	-0.51419	-0.00029451	1.1491	0.00065815	0.63488	0.00036364	572.7728010992568	38.947	0.61343	39.721	39.3	39.914	0.77451					16	11	2	0	0	0	0.70496	1	14386	14386		10.074	0.6908	1	1932700	+		20527	17877	14770	14879	20134	20134					-0.03647499935300402
IDDPVELNET	10	Unmodified	_IDDPVELNET_					0	0	0			REV__nc|ENSG00000115355|Q3V6T2-5|CCDC88A	REV__nc|ENSG00000115355|Q3V6T2-5|CCDC88A	MULTI-MATCH	A375_MHC_IP_R1	1		2	572.772051	1143.52955	-0.36925	-0.0002115	1.6325	0.00093504	1.2632	0.00072354	572.772868211942	39.549	0.60792	39.549	39.136	39.744	0	-0.086177	0.00028271	NaN	10.074	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2577900	+		20528	17877	14770	14879							-0.03647499935300402
IDDPVELNET	10	Unmodified	_IDDPVELNET_					0	0	0			REV__nc|ENSG00000115355|Q3V6T2-5|CCDC88A	REV__nc|ENSG00000115355|Q3V6T2-5|CCDC88A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	572.772051	1143.52955	-0.51419	-0.00029451	1.1491	0.00065815	0.63488	0.00036364	572.7728010992568	38.947	0.61343	39.721	39.3	39.914	0.77451	0.086177	-0.00027105	NaN	10.074	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1932700	+		20529	17877	14770	14879							-0.03647499935300402
IDDREMPV	8	Unmodified	_IDDREMPV_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENST00000451446.1_1_13:24697062-24697869:-|nuORF	ENSG00000205339|ENST00000379719|IPO7;ENST00000451446.1_1_13:24697062-24697869:-|nuORF	ENSG00000205339|ENST00000379719|IPO7	MSMS	A375_MHC_IP_R1	1	487.7003479003906	2	487.734217	973.453881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.753	1	60.753	60.253	61.253	0								0	0	0	0.16876	1	21878	21878		10.183	1.5901	1				20530	9510;12073	14771	14880	20135	20135					-0.03390755596547024
IDDTFSSFY	9	Unmodified	_IDDTFSSFY_					0	0	0			REV__ENSG00000154174|ENST00000284320|TOMM70	REV__ENSG00000154174|ENST00000284320|TOMM70	MSMS	A375_MHC_IP_R2	2	547.7109985351562	2	547.73748	1093.46041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.186	1	93.925	93.425	94.425	0.73902								0	0	0	0.15283	1	35430	35430		16.942	2.104	1		+		20531	19867	14772	14881	20136	20136					-0.0825853916419419
IDDTVEEDED	10	Unmodified	_IDDTVEEDED_					0	0	0		nc|ENSG00000141968|P15498-2|VAV1;ENSG00000141968|ENST00000602142|VAV1	nc|ENSG00000141968|P15498-2|VAV1	nc|ENSG00000141968|P15498-2|VAV1	MSMS	A375_MHC_IP_R2	2	590.2053833007812	2	590.230413	1178.44627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.758	1	81.503	81.003	82.003	0.74474								0	0	0	0.15158	1	30664	30664		14.838	2.3067	1				20532	5282	14773	14882	20137	20137					-0.1358128117378783
IDECNMMPG	9	Unmodified	_IDECNMMPG_					0	0	0			REV__ENSG00000138829|ENST00000262464|FBN2	REV__ENSG00000138829|ENST00000262464|FBN2	MSMS	A375_MHC_IP_R2	2	505.16632080078125	2	505.193013	1008.37147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.723	1	83.466	82.966	83.966	0.74293								0	0	0	0.15486	1	31426	31426		4.756	0.42677	1		+		20533	19127	14774	14883	20138	20138					-0.13237736991356996
IDEDVIQSFDA	11	Unmodified	_IDEDVIQSFDA_					0	0	0		tr|U7SNI7|U7SNI7_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01728PE=4SV=1	tr|U7SNI7|U7SNI7_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01728PE=4SV=1	tr|U7SNI7|U7SNI7_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01728PE=4SV=1	MSMS	A375_MHC_IP_R2	2	626.1324462890625	2	626.290608	1250.56666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.5	1	110.25	109.75	110.75	0.74684								0	0	0	0.16191	1	41324	41324		8.7454	3.0136	1				20534	29553	14775	14884	20139	20139					-0.04859828389521681
IDEEAEMEE	9	Unmodified	_IDEEAEMEE_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.R3751Gfs*17|1|0.29|ENSG00000103657|chr15:63643484-63643484|G/-|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MSMS	A375_MHC_IP_R1	1	547.7098388671875	2	547.713344	1093.41214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.26	1	90.26	89.76	90.76	0								0	0	0	0.15486	1	33169	33169		7.2892	2.5332	1				20535	2464	14776	14885	20140	20140					-0.13083400866389638
IDEEETQF	8	Unmodified	_IDEEETQF_					0	0	0		ENSG00000262655|ENST00000576479|SPON1	ENSG00000262655|ENST00000576479|SPON1	ENSG00000262655|ENST00000576479|SPON1	MSMS	A375_MHC_IP_R2	2	505.67626953125	2	505.719287	1009.42402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.44	1	83.183	82.683	83.683	0.74293								0	0	0	0.16876	1	31315	31315		13.508	1.8676	1				20536	9948	14777	14886	20141	20141					-0.0803141606089639
IDEFLRRY	8	Unmodified	_IDEFLRRY_					0	0	0		FIGN|p.S639F|1|0.27|ENSG00000182263|chr2:163609916-163609916|G/A|missense_variant	FIGN|p.S639F|1|0.27|ENSG00000182263|chr2:163609916-163609916|G/A|missense_variant	FIGN|p.S639F|1|0.27|ENSG00000182263|chr2:163609916-163609916|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	556.6983032226562	2	556.298373	1110.58219	-0.47661	-0.00026514	1.0648	0.00059236	0.5882	0.00032722	556.2987227922008	56.941	0.8151	56.941	56.447	57.263	0					34	15	3	0	0	0	0.96266	1	20403	20403		11.64	3.047	1	3144100			20537	14001	14778	14887	20142	20142					0.03132547708855782
IDEFQLIKQS	10	Unmodified	_IDEFQLIKQS_					0	0	0			REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	MSMS	A375_MHC_IP_R2	2	407.6268005371094	3	407.555561	1219.64485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.939	1	35.703	35.203	36.203	0.76338								0	0	0	0.14685	1	12642	12642		23.801	2.0016	1		+		20538	17596	14779	14888	20143	20143					0.04381648986372966
IDEFTRRIV	9	Unmodified	_IDEFTRRIV_					0	0	0			REV__nc|ENSG00000100983|P48637-2|GSS	REV__nc|ENSG00000100983|P48637-2|GSS	MULTI-SECPEP	A375_MHC_IP_R1	1	575.224365234375	2	574.824755	1147.63496	-0.11025	-6.3374E-05	0.07205	4.1416E-05	-0.038199	-2.1957E-05	574.8248619996099	56.744	0.40758	56.744	56.548	56.956	0					15	7	3	0	0	0	0.46045	1	20338	20338		29.082	7.5446	1	3561100	+		20539	17133	14780	14889	20144	20144					0.0670450577167685
IDEGELGPEQY	11	Unmodified	_IDEGELGPEQY_					0	0	0			REV__ENST00000399417.3_1_X:106595227-106595875:-|nuORF	REV__ENST00000399417.3_1_X:106595227-106595875:-|nuORF	MSMS	A375_MHC_IP_R1	1	625.2194213867188	2	625.282783	1248.55101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.472	1	52.472	51.972	52.972	0								0	0	0	0.14288	1	18661	18661		24.991	4.5373	1		+		20540	24392	14781	14890	20145	20145					-0.06332114906535935
IDEHDMGSFEL	11	Unmodified	_IDEHDMGSFEL_					0	0	0			REV__ENSG00000172071|ENST00000303236|EIF2AK3	REV__ENSG00000172071|ENST00000303236|EIF2AK3	MULTI-MSMS	A375_MHC_IP_R2	2	646.9468994140625	2	646.77681	1291.53907	-0.55003	-0.00035575	-3.5217	-0.0022778	-4.0717	-0.0026335	647.2757404841982	109.73	0.2535	110.48	110.28	110.54	0.74683					6	4	2	0	0	0	0.72949	1	41343	41343		9.3831	2.66	1	977820	+		20541	21119	14782	14891	20146	20146					-0.09504054921376337
IDEHIFTNF	9	Unmodified	_IDEHIFTNF_					0	0	0			REV__ENSG00000258818|ENST00000555835|RNASE4	REV__ENSG00000258818|ENST00000555835|RNASE4	MULTI-SECPEP	A375_MHC_IP_R2	2	378.9206848144531	3	379.185468	1134.53457	-0.13618	-5.1638E-05	-0.11113	-4.2139E-05	-0.24731	-9.3777E-05	379.1855292298518	36.335	0.76507	37.106	36.85	37.615	0.7709					26	14	3	0	0	0	0.71541	1	13149	13149		11.495	6.5977	1	5195900	+		20542	22899	14783	14892	20147	20147					-0.027311512819778727
IDEHVLYKI	9	Unmodified	_IDEHVLYKI_					0	0	0		ENST00000604152.1_2_10:74472094-74618995:+|nuORF	ENST00000604152.1_2_10:74472094-74618995:+|nuORF	ENST00000604152.1_2_10:74472094-74618995:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	565.1690673828125	2	565.316232	1128.61791	-0.27706	-0.00015663	-2.662	-0.0015049	-2.939	-0.0016615	565.3149536253619	54.419	0.20286	54.419	54.314	54.516	0					5	3	2	0	0	0	0.76187	1	19388	19388		7.2892	0	1	1152600			20543	13901	14784	14893	20148	20148					0.0587458516586139
IDEKRSGKAG	10	Unmodified	_IDEKRSGKAG_					0	0	0			REV__nc|ENSG00000104722|P07197-2|NEFM	REV__nc|ENSG00000104722|P07197-2|NEFM	MULTI-SECPEP	A375_MHC_IP_R2	2	354.5961608886719	3	354.196367	1059.56727	-0.66768	-0.00023649	0.31212	0.00011055	-0.35556	-0.00012594	354.1964618989035	25.424	0.81564	26.067	25.719	26.535	0.64368					23	15	2	0	0	0	0.83355	1	8543	8543		14.957	4.8066	1	12772000	+		20544	17332	14785	14894	20149	20149					0.0398705584086656
IDEKTLRPW	9	Unmodified	_IDEKTLRPW_					0	0	0			REV__ENSG00000267060|ENST00000591916|PTGES3L	REV__ENSG00000267060|ENST00000591916|PTGES3L	MULTI-SECPEP	A375_MHC_IP_R1	1	386.60211181640625	3	386.548629	1156.62406	0.20423	7.8945E-05	0.26002	0.00010051	0.46425	0.00017946	386.5486071260056	47.269	0.46357	47.269	47.003	47.467	0					14	8	2	0	0	0	0.72623	1	16636	16636		9.544	0	1	2176400	+		20545	22929	14786	14895	20150	20150					0.05201103397371298
IDELSSDIIEY	11	Unmodified	_IDELSSDIIEY_					0	0	0			REV__ENST00000459775.5_1_2:85848673-85875928:+|nuORF	REV__ENST00000459775.5_1_2:85848673-85875928:+|nuORF	MSMS	A375_MHC_IP_R1	1	648.7149047851562	2	648.813916	1295.61328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.7	1	109.7	109.2	110.2	0								0	0	0	0.16108	1	40233	40233		13.042	0.51092	1		+		20546	20891	14787	14896	20151	20151					-0.022703885582359362
IDEMKYCHI	9	Unmodified	_IDEMKYCHI_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MULTI-SECPEP	A375_MHC_IP_R1	1	384.59967041015625	3	384.51231	1150.5151	-0.052942	-2.0357E-05	0.15867	6.1009E-05	0.10572	4.0652E-05	384.51229476928415	41.571	0.20378	41.571	41.47	41.674	0					5	3	2	0	0	0	0.80101	1	14321	14321		0.23584	0	1	531310	+		20547	22098	14788	14897	20152	20152					-0.054135668887738575
IDENSFHNI	9	Unmodified	_IDENSFHNI_					0	0	0		nc|ENSG00000090686|Q86UV5-4|USP48;nc|ENSG00000090686|Q86UV5-7|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;ENST00000489108.1_1_1:22084083-22109432:-|nuORF	nc|ENSG00000090686|Q86UV5-4|USP48	nc|ENSG00000090686|Q86UV5-4|USP48	MSMS	A375_MHC_IP_R1	1	544.6881103515625	2	544.753995	1087.49344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.144	1	69.144	68.644	69.644	0								0	0	0	0.1535	1	25085	25085		15.847	2.8047	1				20548	1959	14789	14898	20153	20153					-0.04680912321487085
IDESDHGESV	10	Unmodified	_IDESDHGESV_					0	0	0			REV__ENSG00000124374|ENST00000244221|PAIP2B	REV__ENSG00000124374|ENST00000244221|PAIP2B	MSMS	A375_MHC_IP_R1	1	544.1546020507812	2	544.23055	1086.44655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.496	1	88.496	87.996	88.996	0								0	0	0	0.15332	1	32489	32489		10.074	0.72649	1		+		20549	18299	14790	14899	20154	20154					-0.09321816663282334
IDETNRTW	8	Unmodified	_IDETNRTW_					0	0	0			REV__ENST00000507090.2_1_4:13338641-13339112:+|nuORF	REV__ENST00000507090.2_1_4:13338641-13339112:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	518.1484375	2	517.748713	1033.48287	-0.72744	-0.00037663	0.27007	0.00013983	-0.45737	-0.0002368	517.7486109878798	32.82	0.40511	32.82	32.634	33.04	0					19	7	4	0	0	0	0.8824	1	10648	10648		23.148	0	1	4578400	+		20550	25562	14791	14900	20155	20155					-0.03252894975889831
IDETQDYIF	9	Unmodified	_IDETQDYIF_					0	0	0			REV__ENSG00000100290|ENST00000216115|BIK	REV__ENSG00000100290|ENST00000216115|BIK	MSMS	A375_MHC_IP_R2	2	572.2315673828125	2	572.263862	1142.51317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.31	1	104.07	103.57	104.57	0.76428								0	0	0	0.15131	1	39127	39127		19.439	1.304	1		+		20551	17069	14792	14901	20156	20156					-0.052385811013891725
IDEVNKYNKE	10	Unmodified	_IDEVNKYNKE_					0	0	0			REV__tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1	REV__tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	417.2909851074219	3	417.878704	1250.61428	-0.11125	-4.649E-05	0.70424	0.00029429	0.59299	0.0002478	417.8789576295888	32.732	0.35465	33.469	33.265	33.62	0.73691					9	6	2	0	0	0	0.93733	1	11707	11707		5.4027	0	1	704860	+		20552	28173	14793	14902	20157	20157					-0.0010012939865191584
IDEVNKYNKE	10	Unmodified	_IDEVNKYNKE_					0	0	0			REV__tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1	REV__tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		3	417.878704	1250.61428	0.24239	0.00010129	0.4475	0.000187	0.68989	0.00028829	418.2130623547213	33.6	0.25348	33.6	33.445	33.698	0	0.065368	-0.00028559	NaN	5.4027	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	612960	+		20553	28173	14793	14902							-0.0010012939865191584
IDEYDDLSS	9	Unmodified	_IDEYDDLSS_					0	0	0			REV__tr|U7SGM6|U7SGM6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02249PE=4SV=1	REV__tr|U7SGM6|U7SGM6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02249PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	1056.1998291015625	1	1056.43678	1055.4295	0.050172	5.3004E-05	-1.8424	-0.0019463	-1.7922	-0.0018933	1057.4364092334056	122.16	0.35615	122.53	122.42	122.77	0.37661					8	6	2	0	0	0	0.76187	1	46857	46857		7.2892	0.56607	1	21334000	+		20554	28190	14794	14903	20158	20158					-0.09599737269081743
IDEYEEMI	8	Unmodified	_IDEYEEMI_					0	0	0			REV__nc|ENSG00000116984|Q99707-2|MTR	REV__nc|ENSG00000116984|Q99707-2|MTR	MSMS	A375_MHC_IP_R2	2	521.2080078125	2	521.225891	1040.43723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.651	1	57.401	56.901	57.901	0.75015								0	0	0	0.16876	1	21415	21415		9.3474	3.1417	1		+		20555	17984	14795	14904	20159	20159					-0.08137301273154662
IDFLRRLTKRF	11	Unmodified	_IDFLRRLTKRF_					0	0	0			REV__ENST00000609118.1_1_1:111505930-111506428:+|nuORF	REV__ENST00000609118.1_1_1:111505930-111506428:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	489.0298767089844	3	488.964777	1463.8725	-0.63678	-0.00031136	-0.75151	-0.00036746	-1.3883	-0.00067882	488.9645549780667	143.04	0.55487	143.04	142.69	143.24	0					13	10	2	0	0	0	0.73886	1	54860	54860		0.45452	0.35968	1	747800	+		20556	26564	14796	14905	20160	20160					0.15912071704838127
IDFRIGYAKI	10	Unmodified	_IDFRIGYAKI_					0	0	0			REV__nc|ENSG00000135124|Q99571-3|P2RX4	REV__nc|ENSG00000135124|Q99571-3|P2RX4	MULTI-SECPEP	A375_MHC_IP_R1	1	399.130615234375	3	399.232641	1194.67609	-0.38413	-0.00015336	-2.6759	-0.0010683	-3.0601	-0.0012217	399.23226653397757	66.089	0.45564	66.089	65.871	66.326	0					12	8	2	0	0	0	0.94269	1	23958	23958		5.7834	1.2546	1	1270500	+		20557	18826	14797	14906	20161	20161					0.08654266811140587
IDFSQDEWEWL	11	Unmodified	_IDFSQDEWEWL_					0	0	0		ENSG00000197016|ENST00000330619|ZNF470;nc|ENSG00000197016|Q6ECI4-2|ZNF470	ENSG00000197016|ENST00000330619|ZNF470	ENSG00000197016|ENST00000330619|ZNF470	MSMS	A375_MHC_IP_R2	2	734.2598266601562	2	734.324982	1466.63541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.12	1	117.78	117.28	118.28	0.65962								0	0	0	0.16302	1	44302	44302		2.9952	0	1				20558	9103	14798	14907	20162	20162					-0.07924164089786245
IDFSRRWIKV	10	Unmodified	_IDFSRRWIKV_					0	0	0			REV__nc|ENSG00000164708|P15259|PGAM2	REV__nc|ENSG00000164708|P15259|PGAM2	MULTI-SECPEP	A375_MHC_IP_R1	1	440.2859191894531	3	440.59094	1318.75099	-0.32322	-0.00014241	0.048241	2.1254E-05	-0.27497	-0.00012115	440.5909874403169	23.412	0.30663	23.412	23.227	23.533	0					12	5	3	0	0	0	0.94918	1	6375	6375		1.7423	1.7423	1	2799300	+		20559	27328	14799	14908	20163	20163					0.1043644934236454
IDFTEIVNS	9	Unmodified	_IDFTEIVNS_					0	0	0			REV__ENST00000538437.5_1_11:72466777-72492157:-|nuORF	REV__ENST00000538437.5_1_11:72466777-72492157:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	519.18701171875	2	519.261122	1036.50769	-0.67284	-0.00034938	1.6149	0.00083853	0.94201	0.00048915	519.7641115378526	80.517	0.65845	80.517	80.187	80.846	0					18	12	2	0	0	0	0.69507	1	29510	29510		19.257	7.6167	1	1560100	+		20560	22654	14800	14909	20164	20164					-0.009102598931804096
IDFWKPDSV	9	Unmodified	_IDFWKPDSV_					0	0	0		ENSG00000153002|ENST00000282957|CPB1	ENSG00000153002|ENST00000282957|CPB1	ENSG00000153002|ENST00000282957|CPB1	MULTI-SECPEP	A375_MHC_IP_R1	1	554.5579223632812	2	553.779482	1105.54441	-0.3319	-0.0001838	0.10207	5.6524E-05	-0.22983	-0.00012727	553.7794071131444	109.33	0.76456	109.33	109.07	109.83	0					16	14	2	0	0	0	0.67483	1	40206	40206		20.454	5.6154	1	776480			20561	5997	14801	14910	20165	20165					-0.004139632766282375
IDFWKPDSV	9	Unmodified	_IDFWKPDSV_					0	0	0		ENSG00000153002|ENST00000282957|CPB1	ENSG00000153002|ENST00000282957|CPB1	ENSG00000153002|ENST00000282957|CPB1	MULTI-MATCH	A375_MHC_IP_R2	2		2	553.779482	1105.54441	-0.73427	-0.00040662	1.654	0.00091597	0.91976	0.00050934	553.7803837495096	108.65	0.40714	109.4	109.21	109.62	0.74684	0.035668	0.001514	NaN	14.838	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1055000			20562	5997	14801	14910							-0.004139632766282375
IDGAVGCTPL	10	Unmodified	_IDGAVGCTPL_					0	0	0		ENSG00000104415|ENST00000250160|CCN4	ENSG00000104415|ENST00000250160|CCN4	ENSG00000104415|ENST00000250160|CCN4	MULTI-MSMS	A375_MHC_IP_R1	1	473.63916015625	2	473.239135	944.463718	-0.50137	-0.00023727	0.51245	0.00024251	0.011087	5.2466E-06	473.23918587749375	81.246	0.45616	81.246	80.999	81.455	0					13	8	2	0	0	0	0.45919	1	29698	29698		30.637	0.41173	1	2285600			20563	2510	14802	14911	20166	20166					-0.010735675911632825
IDGEEAEPRSE	11	Unmodified	_IDGEEAEPRSE_					0	0	0			REV__ENSG00000198932|ENST00000537097|GPRASP1	REV__ENSG00000198932|ENST00000537097|GPRASP1	MSMS	A375_MHC_IP_R2	2	616.3914184570312	2	616.275489	1230.53642	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.646	1	87.379	86.879	87.879	0.733								0	0	0	0.16191	1	32951	32951		8.7454	0.83525	1		+		20564	22451	14803	14912	20167	20167					-0.06962187054705282
IDGFETKGQY	10	Unmodified	_IDGFETKGQY_					0	0	0			REV__tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1	REV__tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	579.6768798828125	2	579.277303	1156.54005	-0.21468	-0.00012436	-0.4144	-0.00024005	-0.62907	-0.00036441	579.2769569466782	81.37	0.40508	81.37	81.151	81.556	0					12	7	2	0	0	0	0.70012	1	29746	29746		12.241	0.60036	1	1570200	+		20565	28403	14804	14913	20168	20168					-0.0319547249016523
IDGIDEFGVP	10	Unmodified	_IDGIDEFGVP_					0	0	0		tr|U7SM87|U7SM87_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01864PE=4SV=1	tr|U7SM87|U7SM87_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01864PE=4SV=1	tr|U7SM87|U7SM87_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01864PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	531.6309814453125	2	531.261122	1060.50769	-0.54642	-0.00029029	1.3166	0.00069947	0.7702	0.00040918	531.262215495941	102.04	0.85823	102.04	101.55	102.4	0					26	16	3	0	0	0	0.69172	1	37517	37517		25.399	1.3787	1	2000300			20566	29523	14805	14914	20169	20169					-0.020142598931897737
IDGVGSYLY	9	Unmodified	_IDGVGSYLY_					0	0	0		CRIP3|p.G70D|1|0.42|ENSG00000146215|chr6:43307731-43307731|C/T|missense_variant	CRIP3|p.G70D|1|0.42|ENSG00000146215|chr6:43307731-43307731|C/T|missense_variant	CRIP3|p.G70D|1|0.42|ENSG00000146215|chr6:43307731-43307731|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	493.1659851074219	2	493.745108	985.475663	-0.10196	-5.0345E-05	-0.34783	-0.00017174	-0.4498	-0.00022209	493.74507285162395	107.97	0.6599	107.97	107.7	108.36	0					24	12	3	0	0	0	0.20094	1	39557	39557		44.407	8.3628	1	2310000			20567	661	14806	14915	20170	20170					-0.01765627576355655
IDGWCMAPY	9	Unmodified	_IDGWCMAPY_					0	0	0			REV__ENST00000263640.7_1_2:158593781-158593970:-|nuORF	REV__ENST00000263640.7_1_2:158593781-158593970:-|nuORF	MSMS	A375_MHC_IP_R1	1	528.2161254882812	2	528.219888	1054.42522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.518	1	45.518	45.018	46.018	0								0	0	0	0.15131	1	15932	15932		19.439	1.304	1		+		20568	23227	14807	14916	20171	20171					-0.099811964973469
IDHILLKQ	8	Unmodified	_IDHILLKQ_					0	0	0			REV__VPS13B|p.A1194Ifs*14|1|0.16|ENSG00000132549|chr8:99467545-99467557|CTTGCTACGGGAC/-|frameshift_variant	REV__VPS13B|p.A1194Ifs*14|1|0.16|ENSG00000132549|chr8:99467545-99467557|CTTGCTACGGGAC/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	490.70098876953125	2	490.300384	978.586216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.86	1	110.86	110.36	111.36	0								0	0	0	0.16876	1	40645	40645		8.5933	0.68312	1		+		20569	28983	14808	14917	20172	20172					0.0960663720256889
IDHKPVLQM	9	Unmodified	_IDHKPVLQM_					0	0	0		ENST00000426582.2_1_13:77502247-77502832:+|nuORF	ENST00000426582.2_1_13:77502247-77502832:+|nuORF	ENST00000426582.2_1_13:77502247-77502832:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	361.2731628417969	3	360.867193	1079.57975	-0.22197	-8.0103E-05	-0.062095	-2.2408E-05	-0.28407	-0.00010251	360.86716353128804	31.414	0.51138	32.132	31.974	32.486	0.71857					20	9	3	0	0	0	0.75842	1	11152	11152		5.7834	0	1	1791400			20570	11809	14809	14918	20173	20173					0.043143759795157166
IDHRYLDW	8	Unmodified	_IDHRYLDW_					0	0	0			REV__nc|ENSG00000115318|P58215-2|LOXL3	REV__nc|ENSG00000115318|P58215-2|LOXL3	MULTI-MSMS	A375_MHC_IP_R2	2	558.6710815429688	2	559.274898	1116.53524	-0.58234	-0.00032569	-0.55092	-0.00030812	-1.1333	-0.00063381	559.2743988932401	48.009	0.55253	48.77	48.532	49.084	0.76127					11	7	2	0	0	0	0.76654	1	18107	18107		15.847	1.4418	1	3114900	+		20571	15740	14810	14919	20174	20174					-0.018363118422939806
IDHWKQVLV	9	Unmodified	_IDHWKQVLV_					0	0	0		nc|ENSG00000188707|Q96FA7|ZBED10P	nc|ENSG00000188707|Q96FA7|ZBED10P	nc|ENSG00000188707|Q96FA7|ZBED10P	MULTI-SECPEP	A375_MHC_IP_R2	2	569.7020263671875	2	569.324391	1136.63423	-0.5125	-0.00029178	0.0040843	2.3253E-06	-0.50841	-0.00028945	569.324387521189	66.12	0.51129	66.858	66.629	67.14	0.73811					15	9	2	0	0	0	0.75466	1	24988	24988		4.3292	0.73274	1	1915800			20572	14826	14811	14920	20175	20175					0.07137711122595647
IDIASAPAL	9	Unmodified	_IDIASAPAL_					0	0	0		nc|ENSG00000105662|Q6UUV9-3|CRTC1;ENSG00000105662|ENST00000321949|CRTC1;nc|ENSG00000105662|Q6UUV9-2|CRTC1	nc|ENSG00000105662|Q6UUV9-3|CRTC1	nc|ENSG00000105662|Q6UUV9-3|CRTC1	MULTI-SECPEP	A375_MHC_IP_R1	1	436.15020751953125	2	435.750193	869.485833	0.23926	0.00010426	0.48721	0.0002123	0.72647	0.00031656	435.7501127291173	48.501	0.50544	48.501	48.325	48.831	0					14	9	2	0	0	0	0.20094	1	17167	17167		44.407	0	1	1918600			20573	2625	14812	14921	20176	20176					0.0458698014890615
IDIEGSQDIW	10	Unmodified	_IDIEGSQDIW_					0	0	0			REV__ENSG00000110048|ENST00000263847|OSBP	REV__ENSG00000110048|ENST00000263847|OSBP	MULTI-MSMS	A375_MHC_IP_R1	1	588.68212890625	2	588.282586	1174.55062	-0.28088	-0.00016523	-0.077961	-4.5863E-05	-0.35884	-0.0002111	588.2825489077715	55.406	0.35646	55.406	55.177	55.533	0					10	6	2	0	0	0	0.70329	1	19850	19850		10.824	1.4765	1	1905600	+		20574	17610	14813	14922	20177	20177					-0.029674898357598067
IDIEGSQDIW	10	Unmodified	_IDIEGSQDIW_					0	0	0			REV__ENSG00000110048|ENST00000263847|OSBP	REV__ENSG00000110048|ENST00000263847|OSBP	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	588.282586	1174.55062	-0.28088	-0.00016523	-0.077961	-4.5863E-05	-0.35884	-0.0002111	588.2825489077715	55.406	0.35646	55.406	55.177	55.533	0	0.013064	0.00079606	NaN	10.824	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1905600	+		20575	17610	14813	14922							-0.029674898357598067
IDILSSEDP	9	Unmodified	_IDILSSEDP_					0	0	0		nc|ENSG00000173040|Q86UK5-2|EVC2;nc|ENSG00000173040|Q86UK5-3|EVC2;ENSG00000173040|ENST00000344408|EVC2;EVC2|p.G374R|1|0.29|ENSG00000173040|chr4:5663132-5663132|C/T|missense_variant	nc|ENSG00000173040|Q86UK5-2|EVC2	nc|ENSG00000173040|Q86UK5-2|EVC2	MULTI-MSMS	A375_MHC_IP_R1	1	494.6795349121094	2	494.745305	987.476056	-0.77598	-0.00038391	0.43183	0.00021365	-0.34415	-0.00017026	494.74547468287193	68.083	0.60706	68.083	67.754	68.361	0					19	11	2	0	0	0	0.65721	1	24585	24585		10.824	0	1	4088000			20576	7761	14814	14923	20178	20178					-0.01818252647137797
IDIVRKFLLRY	11	Unmodified	_IDIVRKFLLRY_					0	0	0			REV__tr|U7SMC2|U7SMC2_FUSNUN-acetyl-D-galactosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01949PE=3SV=1	REV__tr|U7SMC2|U7SMC2_FUSNUN-acetyl-D-galactosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01949PE=3SV=1	MSMS	A375_MHC_IP_R1	1	718.2960205078125	2	718.442829	1434.87111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.259	1	91.259	90.759	91.759	0								0	0	0	0.16297	1	33532	33532		3.2813	0.54611	1		+		20577	28299	14815	14924	20179	20179					0.1710643761614392
IDKAPDESPY	10	Unmodified	_IDKAPDESPY_					0	0	0		nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;ENST00000373851.6_1_9:123874787-123912836:+|nuORF	nc|ENSG00000119397|Q7Z7A1-5|CNTRL	nc|ENSG00000119397|Q7Z7A1-5|CNTRL	MSMS	A375_MHC_IP_R1	1	567.705810546875	2	567.769311	1133.52407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.95	1	81.95	81.45	82.45	0								0	0	0	0.14483	1	29955	29955		27.629	3.6082	1				20578	3588	14816	14925	20180	20180					-0.03735178727083621
IDKDRKKKDKE	11	Unmodified	_IDKDRKKKDKE_					0	0	0		ENSG00000132424|ENST00000369239|PNISR	ENSG00000132424|ENST00000369239|PNISR	ENSG00000132424|ENST00000369239|PNISR	MULTI-MSMS	A375_MHC_IP_R1	1	702.3049926757812	2	701.904265	1401.79398	-0.41238	-0.00028945	2.302	0.0016158	1.8896	0.0013263	701.9044452955792	92.395	0.4556	92.395	92.11	92.566	0					13	8	2	0	0	0	0.72728	1	34000	34000		11.495	2.7493	1	1302000			20579	4405	14817	14926	20181	20181					0.1091517460911291
IDKELSKKY	9	Unmodified	_IDKELSKKY_					0	0	0		tr|U7SKT8|U7SKT8_FUSNUReversetranscriptasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01930PE=4SV=1	tr|U7SKT8|U7SKT8_FUSNUReversetranscriptasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01930PE=4SV=1	tr|U7SKT8|U7SKT8_FUSNUReversetranscriptasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01930PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	375.61688232421875	3	375.216768	1122.62847	0.23683	8.8863E-05	0.14454	5.4233E-05	0.38137	0.0001431	375.21666095795365	27.098	0.46016	27.777	27.587	28.047	0.67857					18	8	3	0	0	0	0.73804	1	9251	9251		2.086	0	1	2384400			20580	29483	14818	14927	20182	20182					0.07206567820298915
IDKERYIF	8	Unmodified	_IDKERYIF_					0	0	0			REV__nc|ENSG00000211821|A0JD36|TRDV2	REV__nc|ENSG00000211821|A0JD36|TRDV2	MULTI-SECPEP	A375_MHC_IP_R1	1	542.706298828125	2	542.295299	1082.57605	-0.3818	-0.00020705	-0.17743	-9.6219E-05	-0.55923	-0.00030327	542.2950616202961	45.574	0.60574	45.574	45.284	45.89	0					16	11	2	0	0	0	0.8824	1	16027	16027		23.148	0	1	2389900	+		20581	27480	14819	14928	20183	20183					0.03806029477323136
IDKERYIF	8	Unmodified	_IDKERYIF_					0	0	0			REV__nc|ENSG00000211821|A0JD36|TRDV2	REV__nc|ENSG00000211821|A0JD36|TRDV2	MULTI-SECPEP	A375_MHC_IP_R2	2	542.6943969726562	2	542.295299	1082.57605	-0.95102	-0.00051574	-0.20744	-0.00011249	-1.1585	-0.00062823	542.2950268208128	44.697	0.45926	45.466	45.239	45.698	0.7691					12	8	2	0	0	0	0.8211	1	16698	16698		38.151	11.268	1	2552500	+		20582	27480	14819	14928	20184	20184					0.03806029477323136
IDKERYTGFGE	11	Unmodified	_IDKERYTGFGE_					0	0	0			REV__ENSG00000152217|ENST00000649279|SETBP1	REV__ENSG00000152217|ENST00000649279|SETBP1	MSMS	A375_MHC_IP_R2	2	657.8893432617188	2	657.819867	1313.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.7	1	85.436	84.936	85.936	0.73601								0	0	0	0.16203	1	32199	32199		8.1555	2.8586	1		+		20583	19794	14820	14929	20185	20185					-0.01908727024374457
IDKFKRLVK	9	Unmodified	_IDKFKRLVK_					0	0	0			REV__tr|U7T547|U7T547_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00435PE=4SV=1	REV__tr|U7T547|U7T547_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00435PE=4SV=1	MSMS	A375_MHC_IP_R2	2	573.96240234375	2	573.871508	1145.72846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.885	1	81.629	81.129	82.129	0.74474								0	0	0	0.15486	1	30713	30713		7.2892	2.0586	1		+		20584	28819	14821	14930	20186	20186					0.16142849944753834
IDKFNKEL	8	Unmodified	_IDKFNKEL_					0	0	0			REV__nc|ENSG00000136111|O60343-3|TBC1D4	REV__nc|ENSG00000136111|O60343-3|TBC1D4	MULTI-SECPEP	A375_MHC_IP_R1	1	503.14306640625	2	503.782025	1005.5495	-0.37302	-0.00018792	-2.7878	-0.0014044	-3.1608	-0.0015924	503.7816777338461	43.868	0.61233	43.868	43.655	44.267	0					17	11	2	0	0	0	0.94587	1	15364	15364		6.2058	0	1	1250700	+		20585	27243	14822	14931	20187	20187					0.04694340586001999
IDKFRDPQMC	10	Unmodified	_IDKFRDPQMC_					0	0	0		ENSG00000101654|ENST00000383314|RNMT;nc|ENSG00000101654|O43148-2|RNMT;RNMT|p.E339Vfs*6|1|0.29|ENSG00000101654|chr18:13742528-13742529|-/TA|frameshift_variant	ENSG00000101654|ENST00000383314|RNMT	ENSG00000101654|ENST00000383314|RNMT	MULTI-MSMS	A375_MHC_IP_R1	1	626.6934204101562	2	626.794283	1251.57401	-0.35973	-0.00022548	-0.081591	-5.1141E-05	-0.44132	-0.00027662	627.7959753639516	92.402	0.86255	92.402	92.11	92.973	0					31	16	3	0	0	0	0.70496	1	33913	33913		10.074	0	1	2985700			20586	2317	14823	14932	20188	20188					-0.04171090594445559
IDKGIKQFC	9	Unmodified	_IDKGIKQFC_					0	0	0			REV__ENSG00000197385|ENST00000360311|ZNF860	REV__ENSG00000197385|ENST00000360311|ZNF860	MULTI-MSMS	A375_MHC_IP_R1	1	526.6773071289062	2	526.283877	1050.5532	-0.51716	-0.00027217	-0.82883	-0.0004362	-1.346	-0.00070837	526.2841992498854	91.504	2.2799	91.504	90.794	93.074	0					84	44	3	0	0	0	0.29981	1	33931	33931		30.637	7.4881	1	3268000	+		20587	22283	14824	14933	20189	20189					0.02994687088221326
IDKHNEPY	8	Unmodified	_IDKHNEPY_					0	0	0			REV__ENST00000331079.10_1_11:20486013-20515481:+|nuORF	REV__ENST00000331079.10_1_11:20486013-20515481:+|nuORF	MSMS	A375_MHC_IP_R1	1	508.2004699707031	2	508.245806	1014.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.623	1	31.623	31.123	32.123	0								0	0	0	0.16876	1	10139	10139		19.439	5.9311	1		+		20588	23628	14825	14934	20190	20190					-0.029599934875705003
IDKIKEWDKKE	11	Unmodified	_IDKIKEWDKKE_					0	0	0			REV__tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1	REV__tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	717.0413208007812	2	716.395741	1430.77693	-0.56504	-0.00040479	-2.5979	-0.0018612	-3.163	-0.0022659	716.3948665837817	98.725	0.50996	98.725	98.607	99.117	0					11	9	2	0	0	0	0.73459	1	36283	36283		4.5289	1.5336	1	2702500	+		20589	28392	14826	14935	20191	20191					0.0787725400330146
IDKLDLRTV	9	Unmodified	_IDKLDLRTV_					0	0	0			REV__ENSG00000103335|ENST00000301015|PIEZO1	REV__ENSG00000103335|ENST00000301015|PIEZO1	MULTI-SECPEP	A375_MHC_IP_R2	2	537.220947265625	2	536.821681	1071.62881	-1.1426	-0.00061339	-0.033776	-1.8132E-05	-1.1764	-0.00063152	536.8217346285163	38.094	0.30956	38.869	38.687	38.997	0.77451					9	5	2	0	0	0	0.76106	1	14029	14029		5.7319	0	1	3240900	+		20590	17272	14827	14936	20192	20192					0.09585987540140195
IDKLKEMAK	9	Unmodified	_IDKLKEMAK_					0	0	0		ENST00000469042.5_1_3:132298334-132378619:-|nuORF;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11;nc|ENSG00000240303|Q709F0-3|ACAD11	ENST00000469042.5_1_3:132298334-132378619:-|nuORF	ENST00000469042.5_1_3:132298334-132378619:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	358.9532775878906	3	359.210849	1074.61072	-0.51138	-0.00018369	0.18755	6.7369E-05	-0.32383	-0.00011632	359.2110449894315	24.391	0.20321	25.035	24.857	25.06	0.64368					5	3	2	0	0	0	0.4261	1	7996	7996		8.9762	0	1	3633200			20591	9772	14828	14937	20193	20193					0.07639529293783198
IDKLKTQLL	9	Unmodified	_IDKLKTQLL_					0	0	0			REV__ENSG00000123983|ENST00000357430|ACSL3	REV__ENSG00000123983|ENST00000357430|ACSL3	MULTI-MSMS	A375_MHC_IP_R1	1	357.91339111328125	3	357.897258	1070.66995	0.39692	0.00014205	-0.43224	-0.0001547	-0.035323	-1.2642E-05	357.8970670989343	22.242	2.5874	22.242	21.048	23.635	0					129	50	4	0	0	0	0.6343	2	6323	6095;6323		12.873	1.2412	1	104940000	+		20592	18265	14829	14938	20194;20195	20195					0.1374374857962266
IDKLKTQLL	9	Unmodified	_IDKLKTQLL_					0	0	0			REV__ENSG00000123983|ENST00000357430|ACSL3	REV__ENSG00000123983|ENST00000357430|ACSL3	MULTI-MSMS	A375_MHC_IP_R2	2	358.2969970703125	3	357.897258	1070.66995	-0.54657	-0.00019562	0.060806	2.1762E-05	-0.48577	-0.00017385	357.8972451800094	21.741	2.6457	22.361	20.66	23.306	0.61932					121	51	5	0	0	0	0.23226	1	6693	6693		35.612	2.7145	1	65488000	+		20593	18265	14829	14938	20196	20196					0.1374374857962266
IDKPARGT	8	Unmodified	_IDKPARGT_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-MSMS	A375_MHC_IP_R1	1	429.291259765625	2	429.245609	856.476666	-0.057199	-2.4552E-05	0.10445	4.4834E-05	0.047249	2.0282E-05	429.2455364662967	28.617	0.45544	28.617	28.39	28.845	0					11	8	2	0	0	0	0.77515	1	8871	8871		12.532	0.89125	1	1568400	+		20594	16766	14830	14939	20197	20197					0.042686315832384025
IDKQVQALLEG	11	Unmodified	_IDKQVQALLEG_					0	0	0			REV__nc|ENSG00000002746|Q76N89-2|HECW1	REV__nc|ENSG00000002746|Q76N89-2|HECW1	MULTI-MSMS	A375_MHC_IP_R2	2	607.875732421875	2	607.342978	1212.6714	-0.42038	-0.00025532	-2.7973	-0.0016989	-3.2176	-0.0019542	607.8409168651527	106	0.30567	106.76	106.63	106.94	0.75977					7	5	2	0	0	0	0.73378	1	40054	40054		5.2969	1.7004	1	1044000	+		20595	16089	14831	14940	20198	20198					0.07357337877738246
IDKSLDLQSF	10	Unmodified	_IDKSLDLQSF_					0	0	0			REV__ENST00000320876.10_2_18:2804600-2804756:+|nuORF	REV__ENST00000320876.10_2_18:2804600-2804756:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	583.7079467773438	2	583.308603	1164.60265	-0.58475	-0.00034109	-0.1691	-9.8636E-05	-0.75384	-0.00043972	583.3086430122885	66.24	0.86667	66.977	66.374	67.241	0.73746					26	16	3	0	0	0	0.44241	1	25086	25086		43.772	3.8227	1	1924300	+		20596	23564	14832	14941	20199	20199					0.026936735780054732
IDKSREHLY	9	Unmodified	_IDKSREHLY_					0	0	0		tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1	tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1	tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	581.2192993164062	2	580.806562	1159.59857	-0.21984	-0.00012769	0.32483	0.00018866	0.10499	6.0978E-05	580.8067633452066	48.096	0.50219	48.858	48.632	49.134	0.76128					16	9	2	0	0	0	0.36834	1	18138	18138		28.487	0	1	3776700			20597	29851	14833	14942	20200	20200					0.025156288749712985
IDKSYLEN	8	Unmodified	_IDKSYLEN_					0	0	0		nc|ENSG00000069122|Q8IZF2-3|ADGRF5;ENSG00000069122|ENST00000283296|ADGRF5;nc|ENSG00000069122|Q8IZF2-2|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	MSMS	A375_MHC_IP_R2	2	491.1738586425781	2	491.248015	980.481476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.875	1	83.615	83.115	84.115	0.74001								0	0	0	0.16876	1	31488	31488		18.146	0	1				20598	1473	14834	14943	20201	20201					-0.009545290646656213
IDKWRKFQ	8	Unmodified	_IDKWRKFQ_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-SECPEP	A375_MHC_IP_R2	2	374.92791748046875	3	374.213581	1119.61891	0.034597	1.2947E-05	1.7124	0.00064082	1.747	0.00065377	374.21404112646474	26.61	0.81599	27.27	26.957	27.773	0.65992					23	15	2	0	0	0	0.972	1	9111	9111		1.1933	0.32897	1	1830200			20599	5564	14835	14944	20202	20202					0.06388844325419996
IDLASELNAE	10	Unmodified	_IDLASELNAE_					0	0	0		tr|U7SNR4|U7SNR4_FUSNUtRNAdimethylallyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=miaAPE=3SV=1	tr|U7SNR4|U7SNR4_FUSNUtRNAdimethylallyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=miaAPE=3SV=1	tr|U7SNR4|U7SNR4_FUSNUtRNAdimethylallyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=miaAPE=3SV=1	MSMS	A375_MHC_IP_R1	1	537.6419677734375	2	537.769311	1073.52407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.391	1	72.391	71.891	72.891	0								0	0	0	0.14983	1	26336	26336		18.146	1.9972	1				20600	29560	14836	14945	20203	20203					-0.009751787270943169
IDLENIVYY	9	Unmodified	_IDLENIVYY_					0	0	0		nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;ENST00000456101.6_1_6:109766698-109772967:-|nuORF;nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;nc|ENSG00000135596|Q8TDZ2-2|MICAL1;ENSG00000135596|ENST00000358807|MICAL1;nc|ENSG00000135596|Q8TDZ2-4|MICAL1;ENSG00000243156|ENST00000441493|MICAL3;nc|ENSG00000243156|Q7RTP6-2|MICAL3;nc|ENSG00000243156|Q7RTP6-4|MICAL3;nc|ENSG00000243156|Q7RTP6-3|MICAL3;nc|ENSG00000243156|Q7RTP6-5|MICAL3	nc|ENSG00000133816|O94851|MICAL2;ENSG00000243156|ENST00000441493|MICAL3	nc|ENSG00000133816|O94851|MICAL2	MULTI-MSMS	A375_MHC_IP_R2	2	571.8263549804688	2	571.292422	1140.57029	-0.67326	-0.00038463	0.33529	0.00019155	-0.33798	-0.00019308	571.2923360562264	57.175	1.3747	57.925	57.306	58.681	0.75015					84	26	5	0	0	0	0.68046	1	21434	21434		13.508	0.97634	1	16221000			20601	14607;9806	14837	14946	20204	20204					0.005628861749983116
IDLERLRLA	9	Unmodified	_IDLERLRLA_					0	0	0			REV__ENSG00000213171|ENST00000368820|LINGO4	REV__ENSG00000213171|ENST00000368820|LINGO4	MULTI-SECPEP	A375_MHC_IP_R1	1	367.49639892578125	3	366.892507	1097.65569	0.23767	8.7199E-05	0.24206	8.8812E-05	0.47973	0.00017601	366.8925525296765	64.136	0.30321	64.136	63.939	64.242	0					7	5	2	0	0	0	0.80005	1	23237	23237		0	0	1	387340	+		20602	22617	14838	14947	20205	20205					0.1107709615132535
IDLFWRFYAS	10	Unmodified	_IDLFWRFYAS_					0	0	0		ENST00000563371.5_1_15:42553198-42564267:-|nuORF	ENST00000563371.5_1_15:42553198-42564267:-|nuORF	ENST00000563371.5_1_15:42553198-42564267:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	439.6674499511719	3	439.892396	1316.65536	-0.34099	-0.00015	-2.6001	-0.0011438	-2.9411	-0.0012938	440.22586831882194	30.32	0.20251	31.039	30.911	31.114	0.71857					5	3	2	0	0	0	0.93733	1	10668	10668		3.0723	0	1	1185700			20603	13523	14839	14948	20206	20206					0.00969676431463995
IDLGEEWE	8	Unmodified	_IDLGEEWE_					0	0	0			REV__ENSG00000143199|ENST00000367851|ADCY10	REV__ENSG00000143199|ENST00000367851|ADCY10	MSMS	A375_MHC_IP_R2	2	495.6869812011719	2	495.724372	989.434192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.422	1	89.153	88.653	89.653	0.7318								0	0	0	0.16876	1	33650	33650		12.532	0	1		+		20604	19340	14840	14949	20207	20207					-0.06094808335660673
IDLGTGCPEI	10	Unmodified	_IDLGTGCPEI_					0	0	0		ENST00000284486.8_1_8:11302061-11302304:-|nuORF	ENST00000284486.8_1_8:11302061-11302304:-|nuORF	ENST00000284486.8_1_8:11302061-11302304:-|nuORF	MSMS	A375_MHC_IP_R1	1	509.1846008300781	2	509.2497	1016.48485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.269	1	77.269	76.769	77.769	0								0	0	0	0.14601	1	28184	28184		25.399	3.6527	1				20605	10443	14841	14950	20208	20208					-0.02273602282309639
IDLIRREKKKK	11	Unmodified	_IDLIRREKKKK_					0	0	0			REV__ENST00000393214.2_1_X:73596212-73596416:-|nuORF	REV__ENST00000393214.2_1_X:73596212-73596416:-|nuORF	MSMS	A375_MHC_IP_R1	1	713.761474609375	2	713.96446	1425.91437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.148	1	95.148	94.648	95.648	0								0	0	0	0.16302	1	34971	34971		2.9952	1.5133	1		+		20606	24290	14842	14951	20209	20209					0.2184462739337505
IDLLEFNFH	9	Unmodified	_IDLLEFNFH_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	A375_MHC_IP_R1	1	383.9190979003906	3	383.197596	1146.57096	0.34751	0.00013317	-4.4292	-0.0016973	-4.0817	-0.0015641	383.52976516950366	40.713	0.2534	40.713	40.609	40.863	0					6	4	2	0	0	0	0.76187	1	14062	14062		0.86438	0.5351	1	995360	+		20607	20029	14843	14952	20210	20210					0.003537256147183143
IDLLRNRLLI	10	Unmodified	_IDLLRNRLLI_					0	0	0			REV__ENSG00000163625|ENST00000295888|WDFY3	REV__ENSG00000163625|ENST00000295888|WDFY3	MSMS	A375_MHC_IP_R2	2	619.9086303710938	2	619.900797	1237.78704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.612	1	89.344	88.844	89.844	0.7318								0	0	0	0.15585	1	33723	33723		1.8442	0	1		+		20608	20386	14844	14953	20211	20211					0.17765906519230157
IDLLRNRLLIL	11	Unmodified	_IDLLRNRLLIL_					0	0	0			REV__ENSG00000163625|ENST00000295888|WDFY3	REV__ENSG00000163625|ENST00000295888|WDFY3	MSMS	A375_MHC_IP_R2	2	676.5143432617188	2	676.442829	1350.87111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.049	1	65.787	65.287	66.287	0.73811								0	0	0	0.16334	1	24664	24664		1.3295	0.9789	1		+		20609	20386	14845	14954	20212	20212					0.2097043761614259
IDLRRDERRYF	11	Unmodified	_IDLRRDERRYF_					0	0	0			REV__PTCH1|p.L600F|1|0.32|ENSG00000185920|chr9:95469860-95469860|T/A|missense_variant	REV__PTCH1|p.L600F|1|0.32|ENSG00000185920|chr9:95469860-95469860|T/A|missense_variant	MSMS	A375_MHC_IP_R2	2	513.6610717773438	3	513.611063	1537.81136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.798	1	40.572	40.072	41.072	0.77451								0	0	0	0.16305	1	14712	14712		2.8433	0.91578	1		+		20610	27852	14846	14955	20213	20213					0.06396514934772313
IDLSCVFFYLF	11	Unmodified	_IDLSCVFFYLF_					0	0	0			REV__ENSG00000157765|ENST00000382051|SLC34A2	REV__ENSG00000157765|ENST00000382051|SLC34A2	MULTI-SECPEP	A375_MHC_IP_R1	1	684.2412109375	2	683.841225	1365.6679	-0.86225	-0.00058964	0.23987	0.00016403	-0.62238	-0.00042561	683.841946675102	131.76	1.5656	131.76	130.87	132.44	0					59	30	3	0	0	0	0.99921	1	50709	50709		1.3295	0	1	11427000	+		20611	20042	14847	14956	20214	20214					-0.00031048220512275293
IDLSFSRKLKN	11	Unmodified	_IDLSFSRKLKN_					0	0	0			REV__ENSG00000111266|ENST00000298573|DUSP16	REV__ENSG00000111266|ENST00000298573|DUSP16	MULTI-MSMS	A375_MHC_IP_R1	1	661.2854614257812	2	660.885344	1319.75613	-0.6966	-0.00046037	0.43173	0.00028532	-0.26487	-0.00017505	660.8856170191483	52.877	0.55698	52.877	52.592	53.148	0					34	10	4	0	0	0	0.51633	1	18799	18799		29.841	1.3461	1	20565000	+		20612	17661	14848	14957	20215	20215					0.1090470841431852
IDLSRASTLAK	11	Unmodified	_IDLSRASTLAK_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MSMS	A375_MHC_IP_R1	1	587.7266235351562	2	587.843145	1173.67174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.976	1	95.976	95.476	96.476	0								0	0	0	0.16124	1	35276	35276		12.241	4.6317	1				20613	3128	14849	14958	20216	20216					0.09184757597563475
IDLYTYNGIQ	10	Unmodified	_IDLYTYNGIQ_					0	0	0			REV__nc|ENSG00000205268|Q13946-3|PDE7A	REV__nc|ENSG00000205268|Q13946-3|PDE7A	MSMS	A375_MHC_IP_R2	2	600.369873046875	2	600.300778	1198.587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.145	1	63.887	63.387	64.387	0.74263								0	0	0	0.14983	1	23939	23939		18.146	1.9972	1		+		20614	27459	14850	14959	20217	20217					-0.004346129390569331
IDMLNRLFK	9	Unmodified	_IDMLNRLFK_					0	0	0			REV__tr|U7T150|U7T150_FUSNUChorismatemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00692PE=4SV=1	REV__tr|U7T150|U7T150_FUSNUChorismatemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00692PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	383.9188232421875	3	383.886476	1148.6376	-0.17935	-6.8849E-05	-0.38923	-0.00014942	-0.56858	-0.00021827	383.8864567268803	40.18	1.0151	40.955	40.626	41.641	0.77451					23	19	2	0	0	0	0.36834	1	15088	15088		19.626	4.0875	1	1541900	+		20615	28695	14851	14960	20218	20218					0.06922637904972362
IDMQLVSLR	9	Unmodified	_IDMQLVSLR_					0	0	0			REV__ENSG00000086696|ENST00000199936|HSD17B2	REV__ENSG00000086696|ENST00000199936|HSD17B2	MULTI-MSMS	A375_MHC_IP_R2	2	358.9292297363281	3	358.870715	1073.59032	-0.23243	-8.3413E-05	0.13093	4.6987E-05	-0.1015	-3.6426E-05	358.87081423877584	30.895	1.3195	31.613	31.317	32.636	0.71857					31	25	2	0	0	0	0.6324	1	11053	11053		8.9762	0.82072	1	3246000	+		20616	16858	14852	14961	20219	20219					0.056463586339759786
IDMWLWWYR	9	Unmodified	_IDMWLWWYR_					0	0	0			REV__nc|ENSG00000132554|Q8NE09-3|RGS22	REV__nc|ENSG00000132554|Q8NE09-3|RGS22	MULTI-MSMS	A375_MHC_IP_R1	1	685.2303466796875	2	684.831526	1367.6485	-0.44726	-0.0003063	-1.3829	-0.00094708	-1.8302	-0.0012534	684.8307693406268	71.513	0.50391	71.513	71.211	71.715	0					14	9	2	0	0	0	0.6898	1	26009	26009		7.9102	1.7044	1	2234300	+		20617	18662	14853	14962	20220	20220					-0.02061959720754203
IDNDNYLNF	9	Unmodified	_IDNDNYLNF_					0	0	0		nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2	nc|ENSG00000144824|Q86SQ0-2|PHLDB2	nc|ENSG00000144824|Q86SQ0-2|PHLDB2	MULTI-SECPEP	A375_MHC_IP_R2	2	563.6821899414062	2	564.253828	1126.4931	-0.41808	-0.0002359	1.7439	0.00098401	1.3258	0.00074811	564.7549659866462	69.896	0.61013	70.63	70.233	70.844	0.73421					15	11	2	0	0	0	0.76827	1	26493	26493		10.824	1.4765	1	1221700			20618	5518	14854	14963	20221	20221					-0.06508332041335052
IDNFLCDLY	9	Unmodified	_IDNFLCDLY_					0	0	0		nc|ENSG00000181958|Q8NGL6|OR4A15;ENSG00000181958|ENST00000641526|OR4A15	nc|ENSG00000181958|Q8NGL6|OR4A15	nc|ENSG00000181958|Q8NGL6|OR4A15	MSMS	A375_MHC_IP_R2	2	558.2037353515625	2	558.257525	1114.5005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.34	1	107.1	106.6	107.6	0.75977								0	0	0	0.1535	1	40196	40196		15.847	1.0089	1				20619	14798	14855	14964	20222	20222					-0.05217315765275998
IDNGEPGEKY	10	Unmodified	_IDNGEPGEKY_					0	0	0			REV__ENST00000534047.5_1_11:10518329-10527428:+|nuORF	REV__ENST00000534047.5_1_11:10518329-10527428:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	561.6585083007812	2	561.259111	1120.50367	-0.30907	-0.00017347	-0.017061	-9.5755E-06	-0.32613	-0.00018304	561.2588330639866	54.305	0.50428	54.305	54.063	54.567	0					20	9	3	0	0	0	0.63639	1	19404	19404		18.146	1.2041	1	3116500	+		20620	18735	14856	14965	20223	20223					-0.051763493868975274
IDNGEPGEKY	10	Unmodified	_IDNGEPGEKY_					0	0	0			REV__ENST00000534047.5_1_11:10518329-10527428:+|nuORF	REV__ENST00000534047.5_1_11:10518329-10527428:+|nuORF	MSMS	A375_MHC_IP_R1	1	561.1795043945312	2	561.259111	1120.50367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.677	1	43.677	43.177	44.177	0								0	0	0	0.14925	1	15199	15199		19.257	1.1106	1		+		20621	18735	14856	14965	20224	20224					-0.051763493868975274
IDNLRTGLCE	10	Unmodified	_IDNLRTGLCE_					0	0	0			REV__ENSG00000206052|ENST00000382713|DOK6	REV__ENSG00000206052|ENST00000382713|DOK6	MULTI-MSMS	A375_MHC_IP_R2	2	567.682373046875	2	567.284605	1132.55466	-0.26833	-0.00015222	-1.3996	-0.00079395	-1.6679	-0.00094617	567.7863100308623	109.53	0.60744	110.28	109.98	110.59	0.74684					18	11	2	0	0	0	0.62015	1	41370	41370		19.362	1.2156	1	1960800	+		20622	22591	14857	14966	20225	20225					-0.0063172361371925945
IDNLSGDDGF	10	Unmodified	_IDNLSGDDGF_					0	0	0			REV__ENSG00000159399|ENST00000290573|HK2	REV__ENSG00000159399|ENST00000290573|HK2	MULTI-SECPEP	A375_MHC_IP_R1	1	526.9578247070312	2	526.730186	1051.44582	-0.3201	-0.00016861	-0.64301	-0.00033869	-0.96312	-0.0005073	526.7297498716305	82.291	0.30549	82.291	82.062	82.368	0					8	5	2	0	0	0	0.74754	1	30094	30094		12.241	0	1	1619000	+		20623	20117	14858	14967	20226	20226					-0.07784611312331435
IDNLSIWSDLI	11	Unmodified	_IDNLSIWSDLI_					0	0	0			REV__nc|ENSG00000198739|Q86VH5-2|LRRTM3	REV__nc|ENSG00000198739|Q86VH5-2|LRRTM3	MULTI-MSMS	A375_MHC_IP_R1	1	430.9648132324219	3	430.230966	1287.67107	-0.30561	-0.00013148	-0.097227	-4.183E-05	-0.40283	-0.00017331	430.2307750087549	41.063	0.65573	41.063	40.712	41.368	0					27	9	4	0	0	0	0.61555	1	14139	14139		22.109	0.8675	1	11822000	+		20624	22407	14859	14968	20227	20227					0.03873918157842127
IDNLSIWSDLI	11	Unmodified	_IDNLSIWSDLI_					0	0	0			REV__nc|ENSG00000198739|Q86VH5-2|LRRTM3	REV__nc|ENSG00000198739|Q86VH5-2|LRRTM3	MULTI-SECPEP	A375_MHC_IP_R2	2	430.630615234375	3	430.230966	1287.67107	-0.27366	-0.00011774	-0.40688	-0.00017505	-0.68054	-0.00029279	430.2307353741295	40.186	0.40571	40.961	40.777	41.183	0.77451					22	7	4	0	0	0	0.98336	1	14877	14877		14.838	1.3192	1	12711000	+		20625	22407	14859	14968	20228	20228					0.03873918157842127
IDNPLLVPLNE	11	Unmodified	_IDNPLLVPLNE_					0	0	0			REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	413.2992248535156	3	412.899328	1235.67615	0.20049	8.2782E-05	0.043544	1.7979E-05	0.24403	0.00010076	412.8993073117371	60.852	0.55973	60.852	60.566	61.126	0					25	10	3	0	0	0	0.82239	1	21897	21897		29.291	11.428	1	4122300	+		20626	28733	14860	14969	20229	20229					0.0677422202049911
IDNPLLVPLNE	11	Unmodified	_IDNPLLVPLNE_					0	0	0			REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	413.6334228515625	3	412.899328	1235.67615	-0.33031	-0.00013639	0.060523	2.499E-05	-0.26979	-0.0001114	412.89934186898967	60.015	0.65884	60.762	60.349	61.008	0.74714					27	12	3	0	0	0	0.21478	1	22694	22694		38.161	26.529	1	4282100	+		20627	28733	14860	14969	20230	20230					0.0677422202049911
IDNPLLVPLNE	11	Unmodified	_IDNPLLVPLNE_					0	0	0			REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	412.899328	1235.67615	-0.33031	-0.00013639	0.060523	2.499E-05	-0.26979	-0.0001114	412.89934186898967	60.015	0.65884	60.762	60.349	61.008	0.74714	-0.045005	1.0297E-05	NaN	38.161	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4282100	+		20628	28733	14860	14969							0.0677422202049911
IDNQMDRY	8	Unmodified	_IDNQMDRY_					0	0	0		nc|ENSG00000221994|Q2M218-2|ZNF630;ENSG00000221994|ENST00000276054|ZNF630	nc|ENSG00000221994|Q2M218-2|ZNF630	nc|ENSG00000221994|Q2M218-2|ZNF630	MSMS	A375_MHC_IP_R2	2	527.6492919921875	2	527.734748	1053.45494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.641	1	82.384	81.884	82.884	0.74293								0	0	0	0.16876	1	31008	31008		16.942	0	1				20629	9680	14861	14970	20231	20231					-0.06964541227625887
IDNSMRWT	8	Unmodified	_IDNSMRWT_					0	0	0			REV__ENST00000399247.6_1_6:29706061-29706124:-|nuORF	REV__ENST00000399247.6_1_6:29706061-29706124:-|nuORF	MSMS	A375_MHC_IP_R1	1	511.6995849609375	2	511.739834	1021.46511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.537	1	67.537	67.037	68.037	0								0	0	0	0.16876	1	24475	24475		13.508	0.97634	1		+		20630	24389	14862	14971	20232	20232					-0.04475933502408225
IDNTTKKSP	9	Unmodified	_IDNTTKKSP_					0	0	0			REV__ENST00000513321.1_1_4:178274466-178274907:+|nuORF	REV__ENST00000513321.1_1_4:178274466-178274907:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	501.69049072265625	2	502.274564	1002.53457	-0.45852	-0.0002303	-0.12368	-6.212E-05	-0.5822	-0.00029242	502.2743973743791	47.438	0.25351	48.2	48.022	48.275	0.76128					7	4	2	0	0	0	0.60917	1	17727	17727		13.906	0	1	1745600	+		20631	17588	14863	14972	20233	20233					0.03340848718005418
IDPCGIHC	8	Unmodified	_IDPCGIHC_					0	0	0			REV__ENSG00000283992|ENST00000317543|SLURP2	REV__ENSG00000283992|ENST00000317543|SLURP2	MSMS	A375_MHC_IP_R2	2	429.2911071777344	2	429.185849	856.357144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.95	1	137.06	136.56	137.56	0.11134								0	0	0	0.16876	1	53771	53771		2.8892	0.31174	1		+		20632	22999	14864	14973	20234	20234					-0.07678021357344278
IDPFYNESFSF	11	Unmodified	_IDPFYNESFSF_					0	0	0		ENSG00000103528|ENST00000355377|SYT17	ENSG00000103528|ENST00000355377|SYT17	ENSG00000103528|ENST00000355377|SYT17	MULTI-SECPEP	A375_MHC_IP_R1	1	455.3709716796875	3	455.871438	1364.59248	-0.40278	-0.00018362	-2.9952	-0.0013654	-3.398	-0.0015491	456.20541131134064	53.107	0.45425	53.107	52.796	53.25	0					13	8	3	0	0	0	0.9907	1	18869	18869		3.8459	0	1	1465500			20633	2460	14865	14974	20235	20235					-0.07522934147232263
IDPGFMIYY	9	Unmodified	_IDPGFMIYY_					0	0	0			REV__ENSG00000269058|ENST00000269881|CALR3	REV__ENSG00000269058|ENST00000269881|CALR3	MULTI-SECPEP	A375_MHC_IP_R2	2	560.0936279296875	2	559.764986	1117.51542	-0.42494	-0.00023787	4.3868	0.0024556	3.9619	0.0022177	559.7651615746279	99.538	0.20399	100.3	100.17	100.37	0.76278					5	3	2	0	0	0	0.74651	1	37713	37713		4.756	0	1	826250	+		20634	22936	14866	14975	20236	20236					-0.03863823897290786
IDPHLDDAWL	10	Unmodified	_IDPHLDDAWL_					0	0	0		ENSG00000160993|ENST00000292566|ALKBH4	ENSG00000160993|ENST00000292566|ALKBH4	ENSG00000160993|ENST00000292566|ALKBH4	MULTI-SECPEP	A375_MHC_IP_R2	2	399.13031005859375	3	398.864506	1193.57169	-0.16409	-6.5449E-05	-0.016613	-6.6263E-06	-0.1807	-7.2075E-05	398.8644372062751	65.278	0.5579	66.017	65.715	66.273	0.73812					21	10	3	0	0	0	0.93799	1	24786	24786		3.5871	0.26742	1	1161600			20635	6456	14867	14976	20237	20237					-0.01735479736248635
IDPILYTWLIY	11	Unmodified	_IDPILYTWLIY_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;VPS13B|p.L1546*|1|0.35|ENSG00000132549|chr8:99511439-99511439|T/-|frameshift_variant;VPS13B|p.A1194Ifs*14|1|0.16|ENSG00000132549|chr8:99467545-99467557|CTTGCTACGGGAC/-|frameshift_variant	ENSG00000132549|ENST00000357162|VPS13B;VPS13B|p.A1194Ifs*14|1|0.16|ENSG00000132549|chr8:99467545-99467557|CTTGCTACGGGAC/-|frameshift_variant	ENSG00000132549|ENST00000357162|VPS13B	MSMS	A375_MHC_IP_R2	2	705.4491577148438	2	705.389396	1408.76424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.907	1	89.639	89.139	90.139	0.7318								0	0	0	0.16191	1	33837	33837		8.7454	3.4485	1				20636	4421;30147	14868	14977	20238	20238					0.07620842611095213
IDPLPLFIY	9	Unmodified	_IDPLPLFIY_					0	0	0			REV__ENST00000559291.5_1_15:40831548-40845797:-|nuORF	REV__ENST00000559291.5_1_15:40831548-40845797:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	545.1661987304688	2	545.812793	1089.61103	-0.096408	-5.2621E-05	0.30027	0.00016389	0.20386	0.00011127	545.8132127715905	44.528	0.71196	44.528	44.318	45.03	0					16	13	2	0	0	0	0.75466	1	15502	15502		7.9102	7.9102	1	1013600	+		20637	23851	14869	14978	20239	20239					0.06981272285270279
IDPNEDGSY	9	Unmodified	_IDPNEDGSY_					0	0	0			REV__ENSG00000058085|ENST00000264144|LAMC2	REV__ENSG00000058085|ENST00000264144|LAMC2	MULTI-MSMS	A375_MHC_IP_R1	1	506.6953125	2	505.209086	1008.40362	-0.44262	-0.00022361	0.22365	0.00011299	-0.21896	-0.00011062	505.20916006663873	37.016	0.86169	37.016	36.644	37.505	0					42	16	4	0	0	0	0.64808	1	12444	12444		11.64	3.7301	1	20766000	+		20638	16430	14870	14979	20240	20240					-0.1002458672070361
IDPNQEELK	9	Unmodified	_IDPNQEELK_					0	0	0			REV__ENSG00000162434|ENST00000342505|JAK1	REV__ENSG00000162434|ENST00000342505|JAK1	MULTI-SECPEP	A375_MHC_IP_R2	2	362.3007507324219	3	362.520628	1084.54005	-0.5297	-0.00019203	-0.34914	-0.00012657	-0.87884	-0.0003186	362.8549721376485	26.296	0.15126	26.956	26.857	27.008	0.65992					4	2	2	0	0	0	0.63327	1	8860	8860		8.9762	0.82072	1	527310	+		20639	20255	14871	14980	20241	20241					0.001165275098173879
IDPVVRLW	8	Unmodified	_IDPVVRLW_					0	0	0		nc|ENSG00000142784|Q8N5D0-4|WDTC1;ENSG00000142784|ENST00000319394|WDTC1	nc|ENSG00000142784|Q8N5D0-4|WDTC1	nc|ENSG00000142784|Q8N5D0-4|WDTC1	MULTI-MSMS	A375_MHC_IP_R2	2	499.69427490234375	2	499.295102	996.575651	-0.64305	-0.00032107	-0.21516	-0.00010743	-0.85821	-0.0004285	499.294896147877	70.858	0.60827	71.592	71.402	72.01	0.73421					29	11	3	0	0	0	0.76248	2	26870	26846;26870		16.942	8.349	1	9398600			20640	5331	14872	14981	20242;20243	20243					0.07722654548138053
IDQDHSAADY	10	Unmodified	_IDQDHSAADY_					0	0	0			REV__ENSG00000167755|ENST00000310157|KLK6	REV__ENSG00000167755|ENST00000310157|KLK6	MULTI-MSMS	A375_MHC_IP_R1	1	567.7235107421875	2	567.738542	1133.46253	-0.58699	-0.00033326	0.56408	0.00032025	-0.022914	-1.3009E-05	567.7387346482227	32.51	0.35132	32.51	32.383	32.734	0					11	6	2	0	0	0	0.66308	1	10551	10551		16.149	6.0752	1	2033600	+		20641	20790	14873	14982	20244	20244					-0.09886110426373307
IDQEQSPEVP	10	Unmodified	_IDQEQSPEVP_					0	0	0			REV__ENSG00000196663|ENST00000359520|TECPR2	REV__ENSG00000196663|ENST00000359520|TECPR2	MULTI-SECPEP	A375_MHC_IP_R1	1	570.6292724609375	2	571.272218	1140.52988	-0.27191	-0.00015533	-3.6995	-0.0021134	-3.9714	-0.0022687	571.7707316493943	74.977	0.35457	74.977	74.857	75.211	0					11	6	3	0	0	0	0.91909	1	27328	27328		9.3831	1.473	1	763340	+		20642	22219	14874	14983	20245	20245					-0.03476080215409638
IDQIKIIFE	9	Unmodified	_IDQIKIIFE_					0	0	0			REV__ENSG00000101542|ENST00000262717|CDH20	REV__ENSG00000101542|ENST00000262717|CDH20	MULTI-MSMS	A375_MHC_IP_R2	2	560.3980712890625	2	559.826432	1117.63831	-0.69313	-0.00038803	-1.8752	-0.0010498	-2.5683	-0.0014378	559.8262438901346	98.131	0.20217	98.891	98.742	98.945	0.75977					5	3	2	0	0	0	0.34064	1	37214	37214		27.629	3.6082	1	623300	+		20643	17175	14875	14984	20246	20246					0.08419755825661923
IDQIYQVRYTQ	11	Unmodified	_IDQIYQVRYTQ_					0	0	0			REV__nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	REV__nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	MULTI-MSMS	A375_MHC_IP_R1	1	713.7645874023438	2	713.869891	1425.72523	-0.60653	-0.00043298	-1.8157	-0.0012962	-2.4222	-0.0017291	714.3703199689534	54.989	0.66093	54.989	54.567	55.228	0					27	12	4	0	0	0	0.65374	1	19653	19653		29.841	4.8496	1	5318100	+		20644	22960	14876	14985	20247	20247					0.029395103094429942
IDQLQILQRR	10	Unmodified	_IDQLQILQRR_					0	0	0			REV__ASAP2|p.R270Q|1|0.27|ENSG00000151693|chr2:9335139-9335139|G/A|missense_variant	REV__ASAP2|p.R270Q|1|0.27|ENSG00000151693|chr2:9335139-9335139|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	428.99151611328125	3	428.257849	1281.75172	-0.22678	-9.7122E-05	-0.77214	-0.00033067	-0.99892	-0.0004278	428.25747819029937	129.81	1.5169	130.03	129.19	130.7	0.21419					68	29	3	0	0	0	0.72607	1	51201	51201		0.62683	0.12087	1	10623000	+		20645	15459	14877	14986	20248	20248					0.12211243991396259
IDQPSYFH	8	Unmodified	_IDQPSYFH_					0	0	0			REV__ENSG00000138621|ENST00000342932|PPCDC	REV__ENSG00000138621|ENST00000342932|PPCDC	MSMS	A375_MHC_IP_R1	1	503.6660461425781	2	503.735074	1005.4556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.416	1	89.416	88.916	89.916	0								0	0	0	0.16876	1	32846	32846		16.942	1.0951	1		+		20646	19103	14878	14987	20249	20249					-0.04691378516281475
IDQRESSW	8	Unmodified	_IDQRESSW_					0	0	0			REV__ENSG00000135862|ENST00000258341|LAMC1	REV__ENSG00000135862|ENST00000258341|LAMC1	MULTI-MSMS	A375_MHC_IP_R1	1	511.1905212402344	2	510.740888	1019.46722	-0.053222	-2.7182E-05	-0.49033	-0.00025043	-0.54356	-0.00027762	510.7406429226624	38.928	0.50804	38.928	38.679	39.187	0					21	9	3	0	0	0	0.77515	1	13183	13183		12.532	0.89125	1	4028900	+		20647	18892	14879	14988	20250	20250					-0.041731814929448774
IDQWAVNAY	9	Unmodified	_IDQWAVNAY_					0	0	0			REV__OLFM4|p.S374L|1|0.38|ENSG00000102837|chr13:53050359-53050359|C/T|missense_variant	REV__OLFM4|p.S374L|1|0.38|ENSG00000102837|chr13:53050359-53050359|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	540.1979370117188	2	540.261456	1078.50836	-1.2933	-0.00069871	2.0063	0.0010839	0.71304	0.00038523	540.2623637640473	25.896	0.35684	26.556	26.296	26.653	0.65992					9	6	2	0	0	0	0.63811	1	8659	8659		12.532	0.89125	1	1618500	+		20648	17236	14880	14989	20251	20251					-0.027754204534858218
IDQWLTQV	8	Unmodified	_IDQWLTQV_					0	0	0			REV__nc|ENSG00000113569|O75694-2|NUP155	REV__nc|ENSG00000113569|O75694-2|NUP155	MULTI-MSMS	A375_MHC_IP_R1	1	501.6922912597656	2	501.766374	1001.5182	-0.38002	-0.00019068	-0.28832	-0.00014467	-0.66834	-0.00033535	501.76631502690077	74.089	0.8633	74.089	73.74	74.604	0					22	16	2	0	0	0	0.7256	1	27115	27115		26.884	3.7352	1	1545000	+		20649	17787	14881	14990	20252	20252					0.017497675518939104
IDQWYLIF	8	Unmodified	_IDQWYLIF_					0	0	0		ENST00000555815.5_1_15:25924490-25961922:-|nuORF;ENSG00000206190|ENST00000555815|ATP10A	ENST00000555815.5_1_15:25924490-25961922:-|nuORF	ENST00000555815.5_1_15:25924490-25961922:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	366.4359130859375	3	366.527054	1096.55933	-0.29598	-0.00010849	-1.5225	-0.00055804	-1.8185	-0.00066652	366.5263826259053	24.805	1.3733	25.448	25.161	26.535	0.64368					44	26	3	0	0	0	0.77488	1	8147	8147		10.074	1.9184	1	5629100			20650	9537	14882	14991	20253	20253					0.014915285913730258
IDRAFPAEN	9	Unmodified	_IDRAFPAEN_					0	0	0			REV__nc|ENSG00000134762|Q14574-2|DSC3	REV__nc|ENSG00000134762|Q14574-2|DSC3	MULTI-MSMS	A375_MHC_IP_R2	2	516.6610107421875	2	516.759081	1031.50361	-1.2101	-0.00062533	3.46	0.001788	2.2499	0.0011627	517.2618252177035	52.638	1.2169	53.39	52.677	53.894	0.75225					41	23	3	0	0	0	0.44024	1	19763	19763		22.736	1.1993	1	6685200	+		20651	16038	14883	14992	20254	20254					-0.010883045962373217
IDRCARFYI	9	Unmodified	_IDRCARFYI_					0	0	0			REV__nc|ENSG00000019485|Q9NQV5-2|PRDM11	REV__nc|ENSG00000019485|Q9NQV5-2|PRDM11	MULTI-SECPEP	A375_MHC_IP_R2	2	579.2012939453125	2	578.800226	1155.5859	-0.1443	-8.3523E-05	2.2706	0.0013142	2.1263	0.0012307	578.8017653694588	91.894	0.50717	92.631	92.224	92.732	0.73661					14	9	3	0	0	0	0.74412	1	34972	34972		10.074	1.4806	1	1619900	+		20652	16259	14884	14993	20255	20255					0.014328942110751086
IDRDCRSDP	9	Unmodified	_IDRDCRSDP_					0	0	0		ENST00000469596.5_1_2:220071990-220073295:+|nuORF;nc|ENSG00000158552|Q8WV99-2|ZFAND2B;ENST00000464902.5_1_2:220071990-220073377:+|nuORF;ENSG00000158552|ENST00000289528|ZFAND2B;ENST00000475533.1_1_2:220071990-220074025:+|nuORF	ENST00000469596.5_1_2:220071990-220073295:+|nuORF	ENST00000469596.5_1_2:220071990-220073295:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	538.157958984375	2	538.743105	1075.47166	-0.50574	-0.00027247	-0.60591	-0.00032643	-1.1117	-0.00059889	538.7428503049149	71.384	0.45641	71.384	71.159	71.615	0					13	8	2	0	0	0	0.73363	1	26021	26021		10.824	8.9797	1	1523900			20653	6312	14885	14994	20256	20256					-0.06306040341701191
IDRECERKI	9	Unmodified	_IDRECERKI_					0	0	0			REV__nc|ENSG00000152969|Q96N16-3|JAKMIP1	REV__nc|ENSG00000152969|Q96N16-3|JAKMIP1	MULTI-SECPEP	A375_MHC_IP_R2	2	581.7056884765625	2	581.305872	1160.59719	-0.29227	-0.0001699	-0.081517	-4.7386E-05	-0.37379	-0.00021728	581.3058652759286	83.59	0.91766	84.33	83.745	84.663	0.73962					46	17	4	0	0	0	0.49205	1	31713	31713		21.537	3.3906	1	23026000	+		20654	19820	14886	14995	20257	20257					0.02331671514525624
IDRGYDEVY	9	Unmodified	_IDRGYDEVY_					0	0	0		tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	565.2012329101562	2	565.261653	1128.50875	-0.6333	-0.00035798	1.3589	0.00076814	0.72561	0.00041016	565.2619935970407	66.787	0.56195	66.787	66.428	66.99	0					22	10	3	0	0	0	0.63811	1	24069	24069		12.532	3.1841	1	1960600			20655	30058	14887	14996	20258	20258					-0.05036045524275323
IDRHIFHN	8	Unmodified	_IDRHIFHN_					0	0	0			REV__ENSG00000062524|ENST00000263800|LTK	REV__ENSG00000062524|ENST00000263800|LTK	MULTI-MSMS	A375_MHC_IP_R1	1	351.9208068847656	3	351.185914	1050.53591	-0.34023	-0.00011948	-0.27035	-9.4944E-05	-0.61058	-0.00021443	351.5210864431531	25.82	0.45464	25.82	25.613	26.068	0					16	8	3	0	0	0	0.76248	1	7619	7619		13.042	2.8919	1	4097900			20656	16459	14888	14997	20259	20259					0.012665275974313772
IDRHIFHN	8	Unmodified	_IDRHIFHN_					0	0	0			REV__ENSG00000062524|ENST00000263800|LTK	REV__ENSG00000062524|ENST00000263800|LTK	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	351.185914	1050.53591	-0.34023	-0.00011948	-0.27035	-9.4944E-05	-0.61058	-0.00021443	351.5210864431531	25.82	0.45464	25.82	25.613	26.068	0	0	0	NaN	13.042	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4097900			20657	16459	14888	14997							0.012665275974313772
IDRIDDFLK	9	Unmodified	_IDRIDDFLK_					0	0	0			REV__tr|U7SV28|U7SV28_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrAPE=3SV=1	REV__tr|U7SV28|U7SV28_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	567.1851806640625	2	567.811313	1133.60807	-0.83506	-0.00047416	0.49488	0.000281	-0.34018	-0.00019316	567.811485842563	36.716	0.40751	37.487	37.258	37.665	0.7709					11	7	2	0	0	0	0.67483	1	13306	13306		10.074	0	1	1949000	+		20658	28580	14889	14998	20260	20260					0.04661397160452907
IDRIEKPIKY	10	Unmodified	_IDRIEKPIKY_					0	0	0			REV__tr|U7SVT1|U7SVT1_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01329PE=4SV=1	REV__tr|U7SVT1|U7SVT1_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01329PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	425.2991943359375	3	425.587084	1273.73942	-0.40077	-0.00017056	0.40373	0.00017182	0.0029617	1.2605E-06	425.5873081778842	41.255	0.20294	41.255	41.114	41.317	0					6	3	2	0	0	0	0.92055	1	14212	14212		12.228	0	1	1100900	+		20659	28597	14890	14999	20261	20261					0.11350207528380452
IDRIFLWMFII	11	Unmodified	_IDRIFLWMFII_					0	0	0		nc|ENSG00000101204|P43681-2|CHRNA4;ENSG00000101204|ENST00000370263|CHRNA4	nc|ENSG00000101204|P43681-2|CHRNA4	nc|ENSG00000101204|P43681-2|CHRNA4	MULTI-SECPEP	A375_MHC_IP_R2	2	490.33050537109375	3	489.612464	1465.81556	-0.52952	-0.00025926	-0.67273	-0.00032938	-1.2023	-0.00058864	489.61210169992574	73.772	0.41031	74.507	74.294	74.704	0.73541					13	7	2	0	0	0	1.0011	1	27947	27947		0.45452	0.45452	1	1349500			20660	14513	14891	15000	20262	20262					0.10128888104145517
IDRIYRCQ	8	Unmodified	_IDRIYRCQ_					0	0	0			REV__ENSG00000122126|ENST00000371113|OCRL	REV__ENSG00000122126|ENST00000371113|OCRL	MULTI-SECPEP	A375_MHC_IP_R2	2	356.3319396972656	3	356.186926	1065.53895	-0.54656	-0.00019468	0.14318	5.0998E-05	-0.40338	-0.00014368	356.18695524972503	23.136	0.15309	23.766	23.675	23.828	0.63015					4	2	2	0	0	0	0.972	1	7373	7373		3.2813	0	1	1288900	+		20661	18189	14892	15001	20263	20263					0.008800346599173281
IDRKIQVKWRR	11	Unmodified	_IDRKIQVKWRR_					0	0	0			REV__ENSG00000099139|ENST00000674117|PCSK5	REV__ENSG00000099139|ENST00000674117|PCSK5	MSMS	A375_MHC_IP_R1	1	749.5154418945312	2	749.459876	1496.9052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.74	1	123.74	123.24	124.24	0								0	0	0	0.16307	1	46301	46301		2.7352	1.4057	1		+		20662	17011	14893	15002	20264	20264					0.17662278827720002
IDRKKKVLA	9	Unmodified	_IDRKKKVLA_					0	0	0		tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	357.4487609863281	3	357.572998	1069.69716	-0.55774	-0.00019943	0.046343	1.6571E-05	-0.5114	-0.00018286	357.57292773534937	22.764	0.3566	23.394	23.113	23.47	0.63014					9	6	2	0	0	0	0.73491	1	7165	7165		3.8763	0	1	1038800			20663	29974	14894	15003	20265	20265					0.1651027691066247
IDRKLIKQWIY	11	Unmodified	_IDRKLIKQWIY_					0	0	0			REV__tr|U7T4X1|U7T4X1_FUSNUIon-translocatingoxidoreductasecomplexsubunitDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfDPE=3SV=1	REV__tr|U7T4X1|U7T4X1_FUSNUIon-translocatingoxidoreductasecomplexsubunitDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfDPE=3SV=1	MSMS	A375_MHC_IP_R2	2	738.8037109375	2	738.440286	1474.86602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.198	1	99.958	99.458	100.46	0.75977								0	0	0	0.16302	1	37630	37630		2.9952	1.6657	1		+		20664	28808	14895	15004	20266	20266					0.1475813375350299
IDRKLIKQWIY	11	Unmodified	_IDRKLIKQWIY_					0	0	0			REV__tr|U7T4X1|U7T4X1_FUSNUIon-translocatingoxidoreductasecomplexsubunitDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfDPE=3SV=1	REV__tr|U7T4X1|U7T4X1_FUSNUIon-translocatingoxidoreductasecomplexsubunitDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfDPE=3SV=1	MSMS	A375_MHC_IP_R2	2	738.1793212890625	2	738.440286	1474.86602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.627	1	100.39	99.889	100.89	0.76278								0	0	0	0.16302	1	37789	37789		2.9952	1.6657	1		+		20665	28808	14895	15004	20267	20267					0.1475813375350299
IDRMIVLFY	9	Unmodified	_IDRMIVLFY_					0	0	0			REV__FAM135B|p.H258Y|1|0.32|ENSG00000147724|chr8:138197567-138197567|G/A|missense_variant	REV__FAM135B|p.H258Y|1|0.32|ENSG00000147724|chr8:138197567-138197567|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	585.1614379882812	2	585.323002	1168.63145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.33	1	68.066	67.566	68.566	0.73631								0	0	0	0.15486	1	25507	25507		9.3474	1.4373	1		+		20666	26607	14896	15005	20268	20268					0.05388119673443725
IDRNESTLY	9	Unmodified	_IDRNESTLY_					0	0	0			REV__ENSG00000157184|ENST00000371486|CPT2	REV__ENSG00000157184|ENST00000371486|CPT2	MULTI-SECPEP	A375_MHC_IP_R1	1	556.174560546875	2	555.774928	1109.5353	-0.49703	-0.00027624	0.22818	0.00012682	-0.26885	-0.00014942	555.7749581317008	38.621	0.4613	38.621	38.268	38.73	0					15	8	3	0	0	0	0.46045	1	13140	13140		29.082	0	1	5643600	+		20667	20016	14897	15006	20269	20269					-0.015083566329394671
IDRNESTLY	9	Unmodified	_IDRNESTLY_					0	0	0			REV__ENSG00000157184|ENST00000371486|CPT2	REV__ENSG00000157184|ENST00000371486|CPT2	MULTI-SECPEP	A375_MHC_IP_R2	2	556.1741943359375	2	555.774928	1109.5353	-0.94159	-0.00052331	-0.37727	-0.00020968	-1.3189	-0.00073299	555.7748061391395	37.836	0.35742	38.611	38.382	38.739	0.77451					10	6	2	0	0	0	0.38578	1	13877	13877		41.84	3.6641	1	6618100	+		20668	20016	14897	15006	20270	20270					-0.015083566329394671
IDRNHPKGLIE	11	Unmodified	_IDRNHPKGLIE_					0	0	0			REV__ZNF782|p.S118L|1|0.36|ENSG00000196597|chr9:96819670-96819670|G/A|missense_variant	REV__ZNF782|p.S118L|1|0.36|ENSG00000196597|chr9:96819670-96819670|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	431.92633056640625	3	431.242088	1290.70443	-0.22201	-9.5738E-05	-0.26775	-0.00011546	-0.48975	-0.0002112	431.2418374189288	27.371	0.30375	27.371	27.179	27.482	0					9	5	2	0	0	0	0.99856	1	8245	8245		1.7824	0.71096	1	1641800	+		20669	29055	14898	15007	20271	20271					0.07070964720423945
IDRRYAWIKRQ	11	Unmodified	_IDRRYAWIKRQ_					0	0	0		ENSG00000141252|ENST00000437048|VPS53;VPS53|p.Y508*|1|0.5|ENSG00000141252|chr17:562535-562535|G/-|frameshift_variant;nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENST00000576149.5_1_17:503295-579448:-|nuORF	ENSG00000141252|ENST00000437048|VPS53	ENSG00000141252|ENST00000437048|VPS53	MULTI-MSMS	A375_MHC_IP_R1	1	753.3269653320312	2	752.928409	1503.84226	-0.59393	-0.00044718	-0.63882	-0.00048098	-1.2327	-0.00092817	752.927854367129	80.161	0.51133	80.161	79.879	80.39	0					16	9	2	0	0	0	0.73078	1	29236	29236		8.1555	2.4237	1	9305600			20670	5222	14899	15008	20272	20272					0.11049713039665221
IDRRYAWIKRQ	11	Unmodified	_IDRRYAWIKRQ_					0	0	0		ENSG00000141252|ENST00000437048|VPS53;VPS53|p.Y508*|1|0.5|ENSG00000141252|chr17:562535-562535|G/-|frameshift_variant;nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENST00000576149.5_1_17:503295-579448:-|nuORF	ENSG00000141252|ENST00000437048|VPS53	ENSG00000141252|ENST00000437048|VPS53	MULTI-MSMS	A375_MHC_IP_R2	2	753.3285522460938	2	752.928409	1503.84226	-0.78517	-0.00059117	-0.95433	-0.00071854	-1.7395	-0.0013097	752.9276335304082	79.53	0.45798	80.274	80.047	80.505	0.74474					16	8	2	0	0	0	0.73078	1	30163	30163		8.1555	2.8586	1	8384000			20671	5222	14899	15008	20273	20273					0.11049713039665221
IDRTRVAVFG	10	Unmodified	_IDRTRVAVFG_					0	0	0		ENSG00000130226|ENST00000377770|DPP6;nc|ENSG00000130226|P42658-2|DPP6;ENST00000484789.5_1_7:154659706-154672733:+|nuORF	ENSG00000130226|ENST00000377770|DPP6	ENSG00000130226|ENST00000377770|DPP6	MULTI-SECPEP	A375_MHC_IP_R1	1	378.64752197265625	3	378.552374	1132.63529	0.18084	6.8456E-05	0.78037	0.00029541	0.96121	0.00036387	378.55246519403187	37.907	0.25454	37.907	37.761	38.016	0					6	4	2	0	0	0	0.92227	1	12837	12837		5.0475	0	1	1535300			20672	4230	14900	15009	20274	20274					0.07427925491492715
IDRVLRNKI	9	Unmodified	_IDRVLRNKI_					0	0	0		nc|ENSG00000144554|Q9BXW9-3|FANCD2;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2	nc|ENSG00000144554|Q9BXW9-3|FANCD2	nc|ENSG00000144554|Q9BXW9-3|FANCD2	MULTI-SECPEP	A375_MHC_IP_R1	1	375.92132568359375	3	376.240018	1125.69823	0.27659	0.00010407	0.1207	4.5413E-05	0.3973	0.00014948	376.57439423960733	27.362	0.30377	27.362	27.229	27.533	0					7	5	2	0	0	0	0.7911	1	8353	8353		7.609	0.50723	1	1439200			20673	5492	14901	15010	20275	20275					0.14040491279547496
IDRVMSDMVSV	11	Unmodified	_IDRVMSDMVSV_					0	0	0			REV__ENST00000422550.2_X:103230649-103230895:+|nuORF	REV__ENST00000422550.2_X:103230649-103230895:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	418.2738952636719	3	417.873908	1250.59989	0.043177	1.8042E-05	0.028818	1.2042E-05	0.071995	3.0085E-05	417.873978998381	65.794	0.40634	65.794	65.565	65.972	0					16	7	3	0	0	0	0.99625	1	23838	23838		4.7159	2.2811	1	1956300	+		20674	24605	14902	15011	20276	20276					-0.015382411428163323
IDSALVTLDSY	11	Unmodified	_IDSALVTLDSY_					0	0	0			REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	MULTI-SECPEP	A375_MHC_IP_R1	1	399.2715148925781	3	399.539688	1195.59723	-0.32363	-0.0001293	1.555	0.00062128	1.2314	0.00049198	399.5403328330926	24.671	0.35441	24.671	24.498	24.852	0					10	6	2	0	0	0	0.9889	1	7040	7040		4.1166	0	1	2565500	+		20675	19606	14903	15012	20277	20277					0.007259499955580395
IDSDLERFV	9	Unmodified	_IDSDLERFV_					0	0	0			REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61	REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61	MULTI-SECPEP	A375_MHC_IP_R2	2	546.9417724609375	2	547.279846	1092.54514	-0.91147	-0.00049883	-0.5254	-0.00028754	-1.4369	-0.00078637	547.2800687289143	44.853	0.51149	45.622	45.289	45.8	0.76909					13	9	2	0	0	0	0.69507	1	16644	16644		9.3831	0	1	1214900	+		20676	16902	14904	15013	20278	20278					0.002568313724395921
IDSDTNDFY	9	Unmodified	_IDSDTNDFY_					0	0	0		tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	545.7022705078125	2	545.222194	1088.42983	-0.513	-0.0002797	-0.188	-0.0001025	-0.701	-0.0003822	545.2222634352422	91.781	0.75909	91.781	91.401	92.16	0					24	14	2	0	0	0	0.64808	1	33708	33708		11.64	1.5664	1	1558200			20677	29621	14905	15014	20279	20279					-0.11084317549216394
IDSEDRRIYKH	11	Unmodified	_IDSEDRRIYKH_					0	0	0			REV__ENSG00000166266|ENST00000393094|CUL5	REV__ENSG00000166266|ENST00000393094|CUL5	MSMS	A375_MHC_IP_R2	2	716.5421752929688	2	716.370589	1430.72663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.79	1	114.5	114	115	0.70985								0	0	0	0.16258	1	42911	42911		5.2969	0.76802	1		+		20678	20664	14906	15015	20280	20280					0.028491443981920384
IDSELLPFTEY	11	Unmodified	_IDSELLPFTEY_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	A375_MHC_IP_R2	2	664.2244873046875	2	663.826826	1325.6391	-0.64431	-0.00042771	-2.7883	-0.001851	-3.4326	-0.0022787	663.8252716119097	99.408	0.71276	100.17	99.808	100.52	0.75977					15	13	2	0	0	0	0.95991	1	37749	37749		18.146	9.4009	1	2384900			20679	1177	14907	15016	20281	20281					-0.010694943159251125
IDSFHNLSF	9	Unmodified	_IDSFHNLSF_					0	0	0		nc|ENSG00000151458|Q9ULJ7-2|ANKRD50;ENSG00000151458|ENST00000504087|ANKRD50	nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	MULTI-MSMS	A375_MHC_IP_R2	2	540.1611938476562	2	540.261456	1078.50836	-1.2933	-0.00069871	2.0063	0.0010839	0.71304	0.00038523	540.2623637640473	25.896	0.35684	26.556	26.296	26.653	0.65992					9	6	2	0	0	0	0.38603	1	8743	8743		25.399	2.2509	1	1618500			20680	5906	14908	15017	20282	20282					-0.027754204534858218
IDSFNYFINVE	11	Unmodified	_IDSFNYFINVE_					0	0	0		POLR3B|p.V828*|1|0.07|ENSG00000013503|chr12:106459280-106459280|G/-|frameshift_variant;ENSG00000013503|ENST00000228347|POLR3B	POLR3B|p.V828*|1|0.07|ENSG00000013503|chr12:106459280-106459280|G/-|frameshift_variant	POLR3B|p.V828*|1|0.07|ENSG00000013503|chr12:106459280-106459280|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	681.2237548828125	2	680.824618	1359.63468	-0.8595	-0.00058517	-0.72941	-0.0004966	-1.5889	-0.0010818	680.8242206804841	35.04	0.55557	35.804	35.525	36.081	0.76338					32	10	4	0	0	0	0.73984	1	12652	12652		29.841	29.841	1	20950000			20681	1023	14909	15018	20283	20283					-0.030749587388754662
IDSFNYFINVE	11	Unmodified	_IDSFNYFINVE_					0	0	0		POLR3B|p.V828*|1|0.07|ENSG00000013503|chr12:106459280-106459280|G/-|frameshift_variant;ENSG00000013503|ENST00000228347|POLR3B	POLR3B|p.V828*|1|0.07|ENSG00000013503|chr12:106459280-106459280|G/-|frameshift_variant	POLR3B|p.V828*|1|0.07|ENSG00000013503|chr12:106459280-106459280|G/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	680.824618	1359.63468	-0.41787	-0.00028449	-0.93723	-0.00063809	-1.3551	-0.00092258	680.8240724612173	35.602	0.56276	35.602	35.319	35.881	0	-0.1011	-0.00013043	NaN	29.841	32	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18752000			20682	1023	14909	15018							-0.030749587388754662
IDSHMSDGF	9	Unmodified	_IDSHMSDGF_					0	0	0			REV__nc|ENSG00000178425|Q5TFE4-2|NT5DC1	REV__nc|ENSG00000178425|Q5TFE4-2|NT5DC1	MULTI-SECPEP	A375_MHC_IP_R1	1	505.2315979003906	2	504.708199	1007.40185	-0.50205	-0.00025339	0.50952	0.00025716	0.0074713	3.7708E-06	504.70804270879614	84.045	0.70811	84.045	83.533	84.241	0					16	13	2	0	0	0	0.74651	1	30702	30702		2.0598	1.535	1	926490	+		20683	21504	14910	15019	20284	20284					-0.1015591901029893
IDSMTLAW	8	Unmodified	_IDSMTLAW_					0	0	0		COL7A1|p.V972M|1|0.25|ENSG00000114270|chr3:48587498-48587498|C/T|missense_variant	COL7A1|p.V972M|1|0.25|ENSG00000114270|chr3:48587498-48587498|C/T|missense_variant	COL7A1|p.V972M|1|0.25|ENSG00000114270|chr3:48587498-48587498|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	468.63165283203125	2	468.728403	935.442254	-0.20505	-9.6113E-05	1.3185	0.00061804	1.1135	0.00052192	468.730133660505	56.351	0.71043	56.351	55.991	56.701	0					16	13	2	0	0	0	0.94479	1	20070	20070		19.439	7.7987	1	730320			20684	561	14911	15020	20285	20285					-0.028049526198856256
IDSNWWVL	8	Unmodified	_IDSNWWVL_					0	0	0		TAF1L|p.M876I|1|0.64|ENSG00000122728|chr9:32632952-32632952|C/T|missense_variant	TAF1L|p.M876I|1|0.64|ENSG00000122728|chr9:32632952-32632952|C/T|missense_variant	TAF1L|p.M876I|1|0.64|ENSG00000122728|chr9:32632952-32632952|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	516.6895751953125	2	516.761092	1031.50763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.946	1	85.682	85.182	86.182	0.73601								0	0	0	0.16876	1	32293	32293		18.135	1.0221	1				20685	29290	14912	15021	20286	20286					-0.006862151025416097
IDSPHFGSVY	10	Unmodified	_IDSPHFGSVY_					0	0	0			REV__ENSG00000166710|ENST00000648006|B2M	REV__ENSG00000166710|ENST00000648006|B2M	MULTI-SECPEP	A375_MHC_IP_R2	2	560.7000122070312	2	561.266739	1120.51892	-0.70935	-0.00039813	-4.3022	-0.0024147	-5.0116	-0.0028128	561.7643292201335	72.631	0.35539	73.366	73.175	73.53	0.73541					9	6	2	0	0	0	0.91909	1	27610	27610		9.3831	0	1	799100	+		20686	20695	14913	15022	20287	20287					-0.03651437799021551
IDSSDVTVEF	10	Unmodified	_IDSSDVTVEF_					0	0	0		tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1	tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1	tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	557.1615600585938	2	556.261319	1110.50808	-0.38147	-0.00021219	-0.63957	-0.00035577	-1.021	-0.00056796	556.2635272036854	106.31	1.1243	106.31	105.76	106.88	0					51	21	4	0	0	0	0.60556	1	39002	39002		20.454	7.4112	1	3174800			20687	29747	14914	15023	20288	20288					-0.042748849640020126
IDSSFIDVFAD	11	Unmodified	_IDSSFIDVFAD_					0	0	0		ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	MSMS	A375_MHC_IP_R2	2	410.2566833496094	3	410.195921	1227.56593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.647	1	21.257	20.757	21.757	0.61029								0	0	0	0.14837	1	6445	6445		12.856	0.62836	1				20688	9697	14915	15024	20289	20289					-0.03874623038541358
IDSSPHIIPF	10	Unmodified	_IDSSPHIIPF_					0	0	0			REV__RBAK|p.H529Tfs*178|1|0.36|ENSG00000146587|chr7:5065038-5065038|G/-|frameshift_variant	REV__RBAK|p.H529Tfs*178|1|0.36|ENSG00000146587|chr7:5065038-5065038|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	563.6876831054688	2	563.300581	1124.58661	-0.72786	-0.00041	-0.044879	-2.528E-05	-0.77274	-0.00043528	563.3004586299452	54.589	0.66068	55.339	55.068	55.729	0.75075					22	12	3	0	0	0	0.69172	1	20646	20646		25.399	0	1	5980300	+		20689	27871	14916	15025	20290	20290					0.029300121317419325
IDSTWLESIY	10	Unmodified	_IDSTWLESIY_					0	0	0			REV__ENSG00000174125|ENST00000308979|TLR1	REV__ENSG00000174125|ENST00000308979|TLR1	MULTI-SECPEP	A375_MHC_IP_R1	1	614.2006225585938	2	613.800611	1225.58667	-0.40904	-0.00025107	0.37359	0.00022931	-0.035453	-2.1761E-05	613.8007553834526	80.06	0.61199	80.06	79.778	80.39	0					27	11	3	0	0	0	0.48072	1	29211	29211		46.021	2.1627	1	7319400	+		20690	21264	14917	15026	20291	20291					-0.017100326588888493
IDSTWLESIY	10	Unmodified	_IDSTWLESIY_					0	0	0			REV__ENSG00000174125|ENST00000308979|TLR1	REV__ENSG00000174125|ENST00000308979|TLR1	MULTI-SECPEP	A375_MHC_IP_R2	2	614.2001342773438	2	613.800611	1225.58667	-0.46446	-0.00028509	0.15867	9.7394E-05	-0.30579	-0.00018769	613.8005566962208	79.422	0.50551	80.167	79.896	80.401	0.74473					23	9	3	0	0	0	0.38158	1	30107	30107		43.858	0	1	7212400	+		20691	21264	14917	15026	20292	20292					-0.017100326588888493
IDSYQDPF	8	Unmodified	_IDSYQDPF_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-SECPEP	A375_MHC_IP_R1	1	492.4775390625	2	492.71909	983.423627	-0.074319	-3.6619E-05	0.39629	0.00019526	0.32197	0.00015864	492.7194761008276	44.378	0.61521	44.378	44.061	44.676	0					16	11	2	0	0	0	0.94479	1	15391	15391		19.439	15.843	1	1437700	+		20692	19795	14918	15027	20293	20293					-0.06874790990093516
IDSYRRIPSTF	11	Unmodified	_IDSYRRIPSTF_					0	0	0			REV__nc|ENSG00000166938|Q8TF46-2|DIS3L	REV__nc|ENSG00000166938|Q8TF46-2|DIS3L	MULTI-SECPEP	A375_MHC_IP_R2	2	451.68243408203125	3	452.241976	1353.7041	-0.48354	-0.00021868	0.62287	0.00028169	0.13933	6.301E-05	452.57650288290864	35.104	0.45412	35.867	35.627	36.081	0.76338					15	8	3	0	0	0	0.99883	1	12759	12759		2.6312	2.5233	1	1077400	+		20693	20719	14919	15028	20294	20294					0.041395450005666135
IDSYRRIPSTF	11	Unmodified	_IDSYRRIPSTF_					0	0	0			REV__nc|ENSG00000166938|Q8TF46-2|DIS3L	REV__nc|ENSG00000166938|Q8TF46-2|DIS3L	MULTI-MATCH	A375_MHC_IP_R1	1		3	452.241976	1353.7041	-0.11448	-5.1771E-05	-0.22095	-9.9922E-05	-0.33542	-0.00015169	452.24205265806313	36.012	0.45687	36.012	35.727	36.184	0	0.072453	-0.00068911	NaN	4.7159	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1144400	+		20694	20719	14919	15028							0.041395450005666135
IDTAVYRSHNS	11	Unmodified	_IDTAVYRSHNS_					0	0	0			REV__ENSG00000176542|ENST00000316407|USF3	REV__ENSG00000176542|ENST00000316407|USF3	MULTI-SECPEP	A375_MHC_IP_R1	1	421.2909851074219	3	421.542314	1261.60511	-0.008673	-3.6561E-06	-0.54469	-0.00022961	-0.55336	-0.00023326	421.54206844836193	24.858	0.35534	24.858	24.749	25.104	0					9	6	2	0	0	0	0.99332	1	7244	7244		7.0371	1.2537	1	3430600	+		20695	21410	14920	15029	20295	20295					-0.01522477964317659
IDTEEPIQF	9	Unmodified	_IDTEEPIQF_					0	0	0			REV__ENST00000472233.1_1_1:153600604-153604578:-|nuORF	REV__ENST00000472233.1_1_1:153600604-153604578:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	546.2342529296875	2	546.266404	1090.51826	-0.35056	-0.0001915	0.1466	8.0082E-05	-0.20396	-0.00011142	546.2664736496415	54.222	0.75879	54.222	53.758	54.516	0					25	14	2	0	0	0	0.63811	1	19462	19462		12.532	0.89125	1	6525600	+		20696	25132	14921	15030	20296	20296					-0.023382772387549267
IDTNIATQDF	10	Unmodified	_IDTNIATQDF_					0	0	0			REV__nc|ENSG00000056586|Q9HBD1-4|RC3H2	REV__nc|ENSG00000056586|Q9HBD1-4|RC3H2	MULTI-SECPEP	A375_MHC_IP_R1	1	568.684814453125	2	569.274761	1136.53497	-0.28254	-0.00016084	0.1149	6.5412E-05	-0.16764	-9.5431E-05	569.2749163676783	52.161	0.25153	52.161	52.085	52.336	0					6	4	2	0	0	0	0.87043	1	18587	18587		20.415	6.5085	1	965950	+		20697	27106	14922	15031	20297	20297					-0.02783776352816858
IDTSVFLNWY	10	Unmodified	_IDTSVFLNWY_					0	0	0		nc|ENSG00000180113|O60522-2|TDRD6;ENSG00000180113|ENST00000316081|TDRD6	nc|ENSG00000180113|O60522-2|TDRD6	nc|ENSG00000180113|O60522-2|TDRD6	MSMS	A375_MHC_IP_R2	2	629.19384765625	2	629.311146	1256.60774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.26	1	103.02	102.52	103.52	0.76428								0	0	0	0.15417	1	38750	38750		7.2892	0.56607	1				20698	8278	14923	15032	20298	20298					-0.010300225593937284
IDTWTRFEREW	11	Unmodified	_IDTWTRFEREW_					0	0	0			REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	MSMS	A375_MHC_IP_R2	2	513.6608276367188	3	513.584402	1537.73138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.06	1	35.823	35.323	36.323	0.76338								0	0	0	0.1628	1	12690	12690		4.1166	1.4854	1		+		20699	21445	14924	15033	20299	20299					-0.01597971459091241
IDTYNKVGY	9	Unmodified	_IDTYNKVGY_					0	0	0			REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1680297851562	2	536.769114	1071.52368	-1.0717	-0.00057526	-0.71188	-0.00038211	-1.7836	-0.00095737	536.7689868869026	41.299	0.45514	42.073	41.845	42.3	0.77451					17	8	3	0	0	0	0.4261	1	15376	15376		30.637	0	1	2987500	+		20700	28607	14925	15034	20300	20300					-0.00922553656278069
IDVCPHWL	8	Unmodified	_IDVCPHWL_					0	0	0		ENSG00000178222|ENST00000433731|RNF212	ENSG00000178222|ENST00000433731|RNF212	ENSG00000178222|ENST00000433731|RNF212	MULTI-SECPEP	A375_MHC_IP_R1	1	492.4775695800781	2	491.744388	981.474223	0.040394	1.9863E-05	-0.85199	-0.00041896	-0.8116	-0.0003991	491.74390000812593	45.357	0.35195	45.357	45.132	45.484	0					10	6	2	0	0	0	0.96296	1	15831	15831		10.183	3.8293	1	558500			20701	8145	14926	15035	20301	20301					-0.017255401460943176
IDVFQQQTGG	10	Unmodified	_IDVFQQQTGG_					0	0	0		ENST00000397898.7_1_21:46226868-46228953:-|nuORF;nc|ENSG00000188612|P61956-2|SUMO2;ENSG00000188612|ENST00000420826|SUMO2;ENSG00000184900|ENST00000332859|SUMO3;nc|ENSG00000184900|P55854-2|SUMO3	ENST00000397898.7_1_21:46226868-46228953:-|nuORF	ENST00000397898.7_1_21:46226868-46228953:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	546.6912841796875	2	546.769645	1091.52474	-1.0934	-0.00059784	0.78238	0.00042778	-0.31102	-0.00017006	546.7695331514279	60.998	1.012	61.743	61.109	62.121	0.74503					35	19	3	0	0	0	0.57505	1	22932	22932		22.736	0	1	3341000			20702	8617	14927	15036	20302	20302					-0.017363392873676275
IDVLQKSSR	9	Unmodified	_IDVLQKSSR_					0	0	0			REV__ENSG00000116260|ENST00000367602|QSOX1	REV__ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	A375_MHC_IP_R2	2	523.7028198242188	2	523.303655	1044.59276	-0.54498	-0.00028519	-0.10731	-5.6154E-05	-0.65228	-0.00034134	523.3034170946491	123.08	3.6957	123.46	121.81	125.5	0.3766					181	72	4	0	0	0	0.70307	1	46835	46835		6.7232	0	1	222110000	+		20703	17952	14928	15037	20303	20303					0.07224530363282611
IDVLRLLLQHG	11	Unmodified	_IDVLRLLLQHG_					0	0	0		nc|ENSG00000115239|Q9Y575-2|ASB3;ENSG00000115239|ENST00000263634|ASB3;nc|ENSG00000115239|Q9Y575-3|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	MSMS	A375_MHC_IP_R2	2	426.2994689941406	3	426.262712	1275.76631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.625	1	72.36	71.86	72.86	0.73421								0	0	0	0.1628	1	27174	27174		4.1166	1.0444	1				20704	3287	14929	15038	20304	20304					0.1394531613957497
IDVNTVANEV	10	Unmodified	_IDVNTVANEV_					0	0	0		nc|ENSG00000107614|O14717-3|TRDMT1;nc|ENSG00000107614|O14717-2|TRDMT1;ENSG00000107614|ENST00000377799|TRDMT1;nc|ENSG00000107614|O14717-4|TRDMT1;ENST00000479046.1_1_10:17214008-17243633:-|nuORF;nc|ENSG00000107614|O14717-5|TRDMT1;ENST00000486947.5_1_10:17214008-17243373:-|nuORF;nc|ENSG00000107614|O14717-6|TRDMT1	nc|ENSG00000107614|O14717-3|TRDMT1	nc|ENSG00000107614|O14717-3|TRDMT1	MULTI-SECPEP	A375_MHC_IP_R2	2	536.6181640625	2	537.277303	1072.54005	-1.0287	-0.0005527	0.58572	0.0003147	-0.44299	-0.00023801	537.2777711383106	40.628	0.255	41.403	41.285	41.54	0.77451					5	4	2	0	0	0	0.92076	1	15070	15070		3.8763	1.1411	1	694330			20705	2746	14930	15039	20305	20305					0.006685275098107013
IDVQSIIDAVY	11	Unmodified	_IDVQSIIDAVY_					0	0	0		ENSG00000188649|ENST00000646931|CC2D2B;nc|ENSG00000188649|Q6DHV5-2|CC2D2B;nc|ENSG00000188649|Q6DHV5-1|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	MULTI-MSMS	A375_MHC_IP_R2	2	618.3187866210938	2	618.329536	1234.64452	-0.67677	-0.00041847	0.61914	0.00038283	-0.057633	-3.5636E-05	618.3300921221226	73.067	0.51036	73.802	73.53	74.041	0.73541					21	9	3	0	0	0	0.48226	1	27763	27763		46.022	3.7098	1	3449000			20706	8922	14931	15040	20306	20306					0.03658229266534363
IDVTDRFNASF	11	Unmodified	_IDVTDRFNASF_					0	0	0			REV__ENST00000566127.1_1_16:29562517-29572889:-|nuORF	REV__ENST00000566127.1_1_16:29562517-29572889:-|nuORF	MSMS	A375_MHC_IP_R2	2	643.1788940429688	2	642.814584	1283.61462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.372	1	78.115	77.615	78.615	0.74293								0	0	0	0.16164	1	29382	29382		10.151	1.4052	1		+		20707	26239	14932	15041	20307	20307					-0.01584709678809304
IDWHICLPV	9	Unmodified	_IDWHICLPV_					0	0	0			REV__ENSG00000172497|ENST00000307624|ACOT12	REV__ENSG00000172497|ENST00000307624|ACOT12	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6559448242188	2	548.28642	1094.55829	-0.80218	-0.00043982	1.3116	0.00071915	0.50946	0.00027933	548.2873338647292	30.607	0.35266	31.326	31.114	31.467	0.71857					9	6	2	0	0	0	0.62767	1	10747	10747		16.942	10.219	1	1095700	+		20708	21149	14933	15042	20308	20308					0.01478990950795378
IDWIKKMW	8	Unmodified	_IDWIKKMW_					0	0	0		nc|ENSG999|O00370|L1_ORF2;L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|110|3|sense;L1PA6_dup2721|chr7:23261331-23261795:+|3.1658018623838435|0.2438478610544489|3.7|472.0|1|1|sense;L1PA5_dup4054|chr5:147183212-147184419:-|1.0898619934076978|0.3037908791454333|1.84|459.0|8|1|sense;chr3:98867438-98881540|204|17.5|0.23|6.26|-|0|TE_info:L1PA5,L1PA5_dup2059,L1,LINE,acceptor,-,98865721,98867438|None,DCBLD2|18;ENST00000462119.5_1_6:111628768-111636625:-|nuORF	nc|ENSG999|O00370|L1_ORF2	nc|ENSG999|O00370|L1_ORF2	MULTI-SECPEP	A375_MHC_IP_R1	1	374.6170959472656	3	373.872167	1118.59467	0.30225	0.000113	-0.69081	-0.00025827	-0.38856	-0.00014527	373.87176429058434	59.161	0.25447	59.161	58.99	59.245	0					7	4	2	0	0	0	0.972	1	21288	21288		3.9444	0	1	1150200			20709	14975	14934	15043	20309	20309					0.04011867847520989
IDWIRIIETYI	11	Unmodified	_IDWIRIIETYI_					0	0	0			REV__ENSG00000168016|ENST00000645898|TRANK1	REV__ENSG00000168016|ENST00000645898|TRANK1	MSMS	A375_MHC_IP_R2	2	718.3822021484375	2	717.903202	1433.79185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.999	1	92.738	92.238	93.238	0.73902								0	0	0	0.16179	1	34989	34989		9.3831	4.0862	1		+		20710	20819	14935	15044	20310	20310					0.09230745871309409
IDWIVGDQF	9	Unmodified	_IDWIVGDQF_					0	0	0		nc|ENSG00000290837|Q49AS3|LRRC37A5P	nc|ENSG00000290837|Q49AS3|LRRC37A5P	nc|ENSG00000290837|Q49AS3|LRRC37A5P	MULTI-SECPEP	A375_MHC_IP_R2	2	546.1215209960938	2	546.771657	1091.52876	-0.71413	-0.00039046	1.8876	0.0010321	1.1735	0.00064164	546.7733433146586	69.821	0.30754	70.555	70.335	70.642	0.73421					8	5	2	0	0	0	0.65246	1	26453	26453		10.824	1.4765	1	1200500			20711	14959	14936	15045	20311	20311					-0.013342497936719155
IDWLPYSRIS	10	Unmodified	_IDWLPYSRIS_					0	0	0		ENSG00000176055|ENST00000316610|MBLAC2	ENSG00000176055|ENST00000316610|MBLAC2	ENSG00000176055|ENST00000316610|MBLAC2	MULTI-MSMS	A375_MHC_IP_R2	2	417.6243591308594	3	417.224034	1248.65027	0.029079	1.2132E-05	0.20789	8.6737E-05	0.23697	9.8869E-05	417.2240829359349	63.9	0.40562	64.64	64.496	64.902	0.74023					13	7	2	0	0	0	0.71466	1	24251	24251		5.4027	2.9679	1	1901100			20712	7997	14937	15046	20312	20312					0.035893725688538325
IDWYRFFCLWE	11	Unmodified	_IDWYRFFCLWE_					0	0	0		ENSG00000051341|ENST00000264233|POLQ	ENSG00000051341|ENST00000264233|POLQ	ENSG00000051341|ENST00000264233|POLQ	MULTI-MSMS	A375_MHC_IP_R2	2	790.3116455078125	2	789.36593	1576.71731	-0.7235	-0.00057111	-0.48861	-0.0003857	-1.2121	-0.0009568	789.3651563862719	99.663	0.45657	100.43	100.17	100.63	0.76278					15	8	3	0	0	0	0.73795	1	37785	37785		1.3295	1.0225	1	1758900			20713	1235	14938	15047	20313	20313					-0.047983402117097285
IDYCLSHPDAL	11	Unmodified	_IDYCLSHPDAL_					0	0	0			REV__nc|ENSG00000203722|Q6H3X3-3|RAET1G	REV__nc|ENSG00000203722|Q6H3X3-3|RAET1G	MULTI-SECPEP	A375_MHC_IP_R2	2	624.1917114257812	2	623.792263	1245.56997	-0.64895	-0.00040481	1.1563	0.00072132	0.50739	0.0003165	623.7926740292853	68.26	0.405	68.995	68.867	69.272	0.73512					10	7	2	0	0	0	0.9754	1	25878	25878		17.113	2.2746	1	1272200	+		20714	22467	14939	15048	20314	20314					-0.04298856816512853
IDYFHGCY	8	Unmodified	_IDYFHGCY_					0	0	0			REV__nc|ENSG00000138315|Q8WWZ8-2|OIT3	REV__nc|ENSG00000138315|Q8WWZ8-2|OIT3	MULTI-MSMS	A375_MHC_IP_R1	1	509.6099548339844	2	509.210378	1016.4062	-0.5169	-0.00026321	0.32653	0.00016627	-0.19037	-9.6941E-05	509.21047585267337	36.984	0.65701	36.984	36.644	37.301	0					30	12	3	0	0	0	0.7479	1	12392	12392		20.871	20.871	1	7664900	+		20715	19084	14940	15049	20315	20315					-0.10134409796739874
IDYFHGCY	8	Unmodified	_IDYFHGCY_					0	0	0			REV__nc|ENSG00000138315|Q8WWZ8-2|OIT3	REV__nc|ENSG00000138315|Q8WWZ8-2|OIT3	MULTI-MSMS	A375_MHC_IP_R2	2	509.6101989746094	2	509.210378	1016.4062	-0.94829	-0.00048288	0.099124	5.0475E-05	-0.84916	-0.0004324	509.2103880721968	36.31	0.66218	37.081	36.799	37.461	0.7709					30	12	3	0	0	0	0.64599	3	13196	13168;13196;13229		42.968	22.097	1	12788000	+		20716	19084	14940	15049	20316;20317;20318	20317					-0.10134409796739874
IDYFHGCY	8	Unmodified	_IDYFHGCY_					0	0	0			REV__nc|ENSG00000138315|Q8WWZ8-2|OIT3	REV__nc|ENSG00000138315|Q8WWZ8-2|OIT3	MULTI-SECPEP	A375_MHC_IP_R2	2	509.6101989746094	2	509.210378	1016.4062	-0.94829	-0.00048288	0.099124	5.0475E-05	-0.84916	-0.0004324	509.2103880721968	36.31	0.66218	37.081	36.799	37.461	0.7709					30	12	3	0	0	0	0.73517	1	13196	13196		42.968	23.711	1	12788000	+		20717	19084	14940	15049	20319	20319					-0.10134409796739874
IDYFHGCY	8	Unmodified	_IDYFHGCY_					0	0	0			REV__nc|ENSG00000138315|Q8WWZ8-2|OIT3	REV__nc|ENSG00000138315|Q8WWZ8-2|OIT3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	509.210378	1016.4062	-0.5169	-0.00026321	0.32653	0.00016627	-0.19037	-9.6941E-05	509.21047585267337	36.984	0.65701	36.984	36.644	37.301	0	-0.048606	0.00011046	NaN	42.968	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7664900	+		20718	19084	14940	15049							-0.10134409796739874
IDYKRNLP	8	Unmodified	_IDYKRNLP_					0	0	0		ENSG00000186010|ENST00000507754|NDUFA13;nc|ENSG00000186010|Q9P0J0-2|NDUFA13;ENST00000586674.1_1_19:19627047-19643527:+|nuORF;ENST00000511584.2_1_19:19627047-19637070:+|nuORF	ENSG00000186010|ENST00000507754|NDUFA13	ENSG00000186010|ENST00000507754|NDUFA13	MULTI-SECPEP	A375_MHC_IP_R2	2	510.18841552734375	2	509.787641	1017.56073	-0.7062	-0.00036001	2.7796	0.001417	2.0734	0.001057	509.7890315561092	125.45	0.25029	125.75	125.57	125.82	0.2951					7	4	2	0	0	0	0.50167	1	48965	48965		50.855	4.8341	1	24145000			20719	8715	14941	15050	20320	20320					0.05265162680132107
IDYRRWIKEKW	11	Unmodified	_IDYRRWIKEKW_					0	0	0		nc|ENSG00000112941|Q5XG87-2|TENT4A;ENSG00000112941|ENST00000230859|TENT4A;ENST00000514697.1_1_5:6746314-6755055:+|nuORF;ENST00000505457.1_1_5:6749703-6750667:+|nuORF	nc|ENSG00000112941|Q5XG87-2|TENT4A	nc|ENSG00000112941|Q5XG87-2|TENT4A	MULTI-MSMS	A375_MHC_IP_R1	1	796.98046875	2	796.938442	1591.86233	-0.97298	-0.0007754	-4.3474	-0.0034646	-5.3204	-0.00424	797.4382669661105	123.86	0.25412	123.86	123.74	123.99	0					5	4	2	0	0	0	0.73795	1	46470	46470		1.3295	0.13619	1	8489200			20720	3119	14942	15051	20321	20321					0.0900746397965122
IDYSSERPL	9	Unmodified	_IDYSSERPL_					0	0	0			REV__nc|ENSG00000105289|O95049-5|TJP3	REV__nc|ENSG00000105289|O95049-5|TJP3	MSMS	A375_MHC_IP_R1	1	540.2013549804688	2	540.272021	1078.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.99	1	132.99	132.49	133.49	0								0	0	0	0.15486	1	51282	51282		12.532	0	1		+		20721	17369	14943	15052	20322	20322					-0.0066345514460408594
IDYYIRWLHR	10	Unmodified	_IDYYIRWLHR_					0	0	0			REV__ENSG00000137675|ENST00000260229|MMP27	REV__ENSG00000137675|ENST00000260229|MMP27	MSMS	A375_MHC_IP_R2	2	717.8862915039062	2	717.885678	1433.7568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.134	1	81.879	81.379	82.379	0.74474								0	0	0	0.15479	1	30808	30808		5.2969	0	1		+		20722	19025	14944	15053	20323	20323					0.05727547854007753
IEADISKRY	9	Unmodified	_IEADISKRY_					0	0	0		ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3;nc|ENSG00000108465|Q96JB5-2|CDK5RAP3;ENST00000582482.1_1_17:46058511-46058865:+|nuORF;nc|ENSG00000108465|Q96JB5-3|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	MULTI-MSMS	A375_MHC_IP_R1	1	365.9328918457031	3	365.532868	1093.57677	0.12307	4.4985E-05	0.19649	7.1822E-05	0.31955	0.00011681	365.53288073258983	27.374	0.8578	27.374	26.928	27.786	0					30	16	2	0	0	0	0.015356	1	8236	8236		73.196	34.582	1	12823000			20723	2802	14945	15054	20324	20324					0.03372824126381602
IEADISKRY	9	Unmodified	_IEADISKRY_					0	0	0		ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3;nc|ENSG00000108465|Q96JB5-2|CDK5RAP3;ENST00000582482.1_1_17:46058511-46058865:+|nuORF;nc|ENSG00000108465|Q96JB5-3|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	MULTI-MSMS	A375_MHC_IP_R2	2	365.9328918457031	3	365.532868	1093.57677	-0.14825	-5.4192E-05	3.8897	0.0014218	3.7414	0.0013676	365.53292354482204	26.958	0.7658	27.617	27.161	27.927	0.65992					48	14	5	0	0	0	0.024574	1	9032	9032		64.927	32.889	1	14714000			20724	2802	14945	15054	20325	20325					0.03372824126381602
IEAELMEQI	9	Unmodified	_IEAELMEQI_					0	0	0		tr|U7SVU6|U7SVU6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01344PE=4SV=1	tr|U7SVU6|U7SVU6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01344PE=4SV=1	tr|U7SVU6|U7SVU6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01344PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	537.6712036132812	2	538.270632	1074.52671	-0.59668	-0.00032117	3.2385	0.0017432	2.6418	0.001422	538.2730724545792	54.645	0.25479	54.645	54.415	54.67	0					6	4	2	0	0	0	0.3607	1	19453	19453		26.884	1.4843	1	1052700			20725	29798	14946	15055	20326	20326					-0.007570465937760673
IEAELNKHW	9	Unmodified	_IEAELNKHW_					0	0	0		nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188;NUP188|p.Q211Tfs*16|1|0.48|ENSG00000095319|chr9:128968548-128968549|-/A|frameshift_variant	nc|ENSG00000095319|Q5SRE5-2|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-MSMS	A375_MHC_IP_R1	1	380.9330139160156	3	380.532979	1138.57711	-0.042061	-1.6006E-05	0.6901	0.00026261	0.64804	0.0002466	380.5331860468773	38.193	0.45867	38.193	37.913	38.371	0					12	8	2	0	0	0	0.2989	2	12942	12942;12959		30.703	14.554	1	5132500			20726	2039	14947	15056	20327;20328	20327					0.013362438462309001
IEAELNKHW	9	Unmodified	_IEAELNKHW_					0	0	0		nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188;NUP188|p.Q211Tfs*16|1|0.48|ENSG00000095319|chr9:128968548-128968549|-/A|frameshift_variant	nc|ENSG00000095319|Q5SRE5-2|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-MSMS	A375_MHC_IP_R2	2	380.9327697753906	3	380.532979	1138.57711	-0.40635	-0.00015463	0.3819	0.00014533	-0.024453	-9.3051E-06	380.53314773478763	37.37	0.6124	38.14	37.867	38.479	0.7709					25	11	3	0	0	0	0.2989	1	13702	13702		30.703	9.1133	1	5044600			20727	2039	14947	15056	20329	20329					0.013362438462309001
IEAETGQYY	9	Unmodified	_IEAETGQYY_					0	0	0			REV__ENSG00000157353|ENST00000288078|FCSK	REV__ENSG00000157353|ENST00000288078|FCSK	MULTI-SECPEP	A375_MHC_IP_R1	1	536.7236938476562	2	537.242929	1072.47131	-0.52522	-0.00028217	0.1134	6.0924E-05	-0.41182	-0.00022124	537.2430092641465	37.357	0.66481	37.357	37.096	37.761	0					14	12	2	0	0	0	0.76187	1	12682	12682		7.2892	0	1	1069500	+		20728	20024	14948	15057	20330	20330					-0.06203136789895325
IEAGIVILV	9	Unmodified	_IEAGIVILV_					0	0	0			REV__tr|U7SYF3|U7SYF3_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00844PE=4SV=1	REV__tr|U7SYF3|U7SYF3_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00844PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	926.9912719726562	1	926.592096	925.584819	-0.16012	-0.00014837	-0.13394	-0.00012411	-0.29406	-0.00027247	926.5917378726854	135.29	0.40775	135.43	135.25	135.66	0.13901					15	7	3	0	0	0	0.50702	1	53255	53255		32.305	0	1	21766000	+		20729	28629	14949	15058	20331	20331					0.11905003113815837
IEAGIVILV	9	Unmodified	_IEAGIVILV_					0	0	0			REV__tr|U7SYF3|U7SYF3_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00844PE=4SV=1	REV__tr|U7SYF3|U7SYF3_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00844PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		1	926.592096	925.584819	-0.34778	-0.00032225	0.24752	0.00022935	-0.10025	-9.2894E-05	926.5921456889931	135.46	0.50751	135.46	135.28	135.79	0	0.013787	0.00014074	NaN	32.305	21	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30439000	+		20730	28629	14949	15058							0.11905003113815837
IEAGRVEAKF	10	Unmodified	_IEAGRVEAKF_					0	0	0			REV__ENSG00000074842|ENST00000262947|MYDGF	REV__ENSG00000074842|ENST00000262947|MYDGF	MULTI-SECPEP	A375_MHC_IP_R1	1	374.30096435546875	3	373.876746	1118.60841	0.032428	1.2124E-05	3.9205	0.0014658	3.9529	0.0014779	374.21351075162283	29.063	0.30425	29.063	28.845	29.149	0					7	5	2	0	0	0	0.90513	1	9009	9009		7.4771	0.37534	1	405570	+		20731	16643	14950	15059	20332	20332					0.05384816880314247
IEAIEEAER	9	Unmodified	_IEAIEEAER_					0	0	0		tr|U7T6J3|U7T6J3_FUSNURelB/DinJfamilyaddictionmoduleantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00259PE=3SV=1	tr|U7T6J3|U7T6J3_FUSNURelB/DinJfamilyaddictionmoduleantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00259PE=3SV=1	tr|U7T6J3|U7T6J3_FUSNURelB/DinJfamilyaddictionmoduleantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00259PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	1058.9864501953125	1	1059.53168	1058.5244	-0.49507	-0.00052454	-2.8066	-0.0029736	-3.3016	-0.0034982	1060.5296768100122	123.3	0.50494	123.3	123.08	123.59	0					12	9	2	0	0	0	0.69507	1	46036	46036		19.257	3.4098	1	44158000			20732	30047	14951	15060	20333	20333					-0.0025175900723297673
IEALQKAG	8	Unmodified	_IEALQKAG_					0	0	0		ENST00000459908.5_1_13:113439469-113512287:+|nuORF;ATP11A|p.S1038Rfs*15|1|0.23|ENSG00000068650|chr13:112873622-112873622|G/-|frameshift_variant;ENSG00000068650|ENST00000375645|ATP11A	ENST00000459908.5_1_13:113439469-113512287:+|nuORF	ENST00000459908.5_1_13:113439469-113512287:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	415.6426086425781	2	415.242535	828.470518	0.54653	0.00022694	-0.35437	-0.00014715	0.19217	7.9796E-05	415.24235880363216	43.015	0.61115	43.015	42.689	43.3	0					24	11	4	0	0	0	0.77651	1	14926	14926		42.095	2.1372	1	6390300			20733	202	14952	15061	20334	20334					0.04942113351705757
IEALQKAG	8	Unmodified	_IEALQKAG_					0	0	0		ENST00000459908.5_1_13:113439469-113512287:+|nuORF;ATP11A|p.S1038Rfs*15|1|0.23|ENSG00000068650|chr13:112873622-112873622|G/-|frameshift_variant;ENSG00000068650|ENST00000375645|ATP11A	ENST00000459908.5_1_13:113439469-113512287:+|nuORF	ENST00000459908.5_1_13:113439469-113512287:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	415.27154541015625	2	415.242535	828.470518	0.045972	1.9089E-05	-0.151	-6.2702E-05	-0.10503	-4.3612E-05	415.2424086863133	42.112	0.86739	42.884	42.502	43.369	0.7724					22	16	2	0	0	0	0.7256	1	15642	15642		26.884	5.137	1	4501800			20734	202	14952	15061	20335	20335					0.04942113351705757
IEALRKQFQ	9	Unmodified	_IEALRKQFQ_					0	0	0		ENSG00000144395|ENST00000389175|CCDC150;nc|ENSG00000144395|Q8NCX0-4|CCDC150;ENST00000463826.5_1_2:197584220-197590826:+|nuORF;nc|ENSG00000144395|Q8NCX0-3|CCDC150;ENST00000494389.5_1_2:197559796-197594150:+|nuORF;nc|ENSG00000144395|Q8NCX0-2|CCDC150	ENSG00000144395|ENST00000389175|CCDC150	ENSG00000144395|ENST00000389175|CCDC150	MULTI-SECPEP	A375_MHC_IP_R2	2	567.168212890625	2	566.827298	1131.64004	-0.55453	-0.00031433	-1.0935	-0.00061981	-1.648	-0.00093414	566.8274624812741	66.309	0.45984	67.045	66.729	67.189	0.73631					12	8	2	0	0	0	0.76827	1	25018	25018		1.4819	0	1	581500			20735	5483	14953	15062	20336	20336					0.07948809634262943
IEAMVLKKEF	10	Unmodified	_IEAMVLKKEF_					0	0	0		ENSG00000137460|ENST00000511601|FHDC1	ENSG00000137460|ENST00000511601|FHDC1	ENSG00000137460|ENST00000511601|FHDC1	MULTI-SECPEP	A375_MHC_IP_R1	1	603.6344604492188	2	604.341392	1206.66823	-0.36513	-0.00022066	-0.58089	-0.00035106	-0.94602	-0.00057172	604.844996386517	99.499	0.20131	99.499	99.422	99.624	0					5	3	2	0	0	0	0.9269	1	36537	36537		3.5965	0.31518	1	2442000			20736	4883	14954	15063	20337	20337					0.07316371499359775
IECDMCQDW	9	Unmodified	_IECDMCQDW_					0	0	0		nc|ENSG00000172943|Q9UPP1-5|PHF8;nc|ENSG00000172943|Q9UPP1-4|PHF8;nc|ENSG00000172943|Q9UPP1-3|PHF8;ENSG00000172943|ENST00000338154|PHF8;nc|ENSG00000172943|Q9UPP1|PHF8;ENST00000462182.1_1_X:54066489-54069146:-|nuORF	nc|ENSG00000172943|Q9UPP1-5|PHF8	nc|ENSG00000172943|Q9UPP1-5|PHF8	MSMS	A375_MHC_IP_R1	1	571.73583984375	2	571.701202	1141.38785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.513	1	68.513	68.013	69.013	0								0	0	0	0.15486	1	24843	24843		4.756	0.42677	1				20737	7751	14955	15064	20338	20338					-0.17718655825274254
IECDMCQDW	9	Unmodified	_IECDMCQDW_					0	0	0		nc|ENSG00000172943|Q9UPP1-5|PHF8;nc|ENSG00000172943|Q9UPP1-4|PHF8;nc|ENSG00000172943|Q9UPP1-3|PHF8;ENSG00000172943|ENST00000338154|PHF8;nc|ENSG00000172943|Q9UPP1|PHF8;ENST00000462182.1_1_X:54066489-54069146:-|nuORF	nc|ENSG00000172943|Q9UPP1-5|PHF8	nc|ENSG00000172943|Q9UPP1-5|PHF8	MSMS	A375_MHC_IP_R1	1	571.7362060546875	2	571.701202	1141.38785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.8	1	92.8	92.3	93.3	0								0	0	0	0.15486	1	34109	34109		2.3027	0	1				20738	7751	14955	15064	20339	20339					-0.17718655825274254
IECEHCPGV	9	Unmodified	_IECEHCPGV_					0	0	0			REV__ENSG00000205856|ENST00000382097|C22orf42	REV__ENSG00000205856|ENST00000382097|C22orf42	MULTI-SECPEP	A375_MHC_IP_R1	1	494.1976318359375	2	493.707145	985.399737	-0.34828	-0.00017195	0.35781	0.00017665	0.0095237	4.7019E-06	493.7075407062481	43.801	0.661	43.801	43.4	44.061	0					16	12	2	0	0	0	0.75466	1	15151	15151		4.3292	0	1	3122000	+		20739	22587	14956	15065	20340	20340					-0.09354671019764282
IEDAKHMDI	9	Unmodified	_IEDAKHMDI_					0	0	0		ENST00000442952.1_1_10:121664067-121664139:+|nuORF	ENST00000442952.1_1_10:121664067-121664139:+|nuORF	ENST00000442952.1_1_10:121664067-121664139:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	535.6590576171875	2	536.260599	1070.50665	-0.73972	-0.00039668	-3.291	-0.0017648	-4.0307	-0.0021615	536.2593394432279	60.969	0.35597	60.969	60.719	61.075	0					13	6	3	0	0	0	0.74412	1	21891	21891		10.074	0.6908	1	1509200			20740	12002	14957	15066	20341	20341					-0.025787975337379976
IEDDMDGGDW	10	Unmodified	_IEDDMDGGDW_					0	0	0		nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6	nc|ENSG00000091409|P23229-4|ITGA6	nc|ENSG00000091409|P23229-4|ITGA6	MSMS	A375_MHC_IP_R2	2	576.8656616210938	2	576.711136	1151.40772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.88	1	117.54	117.04	118.04	0.65962								0	0	0	0.1552	1	44203	44203		3.9444	1.6417	1				20741	14499	14958	15067	20342	20342					-0.16192865289303882
IEDDPEYKKF	10	Unmodified	_IEDDPEYKKF_					0	0	0		ENSG00000169062|ENST00000375299|UPF3A	ENSG00000169062|ENST00000375299|UPF3A	ENSG00000169062|ENST00000375299|UPF3A	MULTI-SECPEP	A375_MHC_IP_R1	1	428.9433288574219	3	428.543321	1282.60813	-0.073663	-3.1568E-05	0.2396	0.00010268	0.16593	7.1109E-05	428.54334719909764	31.637	0.45596	31.637	31.363	31.819	0					26	8	5	0	0	0	0.83327	1	10132	10132		25.997	7.2762	1	10490000			20742	7376	14959	15068	20343	20343					-0.02186647630196603
IEDDSRCLY	9	Unmodified	_IEDDSRCLY_					0	0	0		nc|ENSG00000139990|Q96JK2-2|DCAF5;nc|ENSG00000139990|Q96JK2-3|DCAF5;ENSG00000139990|ENST00000341516|DCAF5	nc|ENSG00000139990|Q96JK2-2|DCAF5	nc|ENSG00000139990|Q96JK2-2|DCAF5	MULTI-SECPEP	A375_MHC_IP_R1	1	556.7049560546875	2	557.247689	1112.48082	-0.37833	-0.00021082	2.1529	0.0011997	1.7746	0.0009889	557.248984610973	110.35	0.45754	110.35	110.14	110.59	0					13	8	2	0	0	0	0.74651	1	40418	40418		4.756	0	1	632420			20743	5123	14960	15069	20344	20344					-0.07091691776008702
IEDEGEGGDAM	11	Unmodified	_IEDEGEGGDAM_					0	0	0			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MSMS	A375_MHC_IP_R1	1	561.6837158203125	2	561.716418	1121.41828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.329	1	90.329	89.829	90.829	0								0	0	0	0.16249	1	33195	33195		5.7319	0.97584	1		+		20744	22389	14961	15070	20345	20345					-0.1375688263487973
IEDEYKNKY	9	Unmodified	_IEDEYKNKY_					0	0	0			REV__CON__Q6IFZ6;REV__CON__Q922U2	REV__CON__Q6IFZ6	MSMS	A375_MHC_IP_R2	2	601.1895751953125	2	601.290411	1200.56627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.863	1	90.595	90.095	91.095	0.7318								0	0	0	0.15411	1	34193	34193		14.838	0	1		+	+	20745	15892;15896	14962	15071	20346	20346					-0.02599203318709442
IEDGRDDDF	9	Unmodified	_IEDGRDDDF_					0	0	0		nc|ENSG00000131089|O43307-3|ARHGEF9;nc|ENSG00000131089|O43307-2|ARHGEF9;nc|ENSG00000131089|O43307|ARHGEF9;ENSG00000131089|ENST00000671741|ARHGEF9	nc|ENSG00000131089|O43307-3|ARHGEF9	nc|ENSG00000131089|O43307-3|ARHGEF9	MULTI-SECPEP	A375_MHC_IP_R1	1	540.6998901367188	2	541.225268	1080.43598	-0.6741	-0.00036484	-0.90962	-0.00049231	-1.5837	-0.00085715	541.2246093105473	87.529	0.56151	87.529	87.186	87.747	0					16	10	2	0	0	0	0.78348	1	32081	32081		7.9102	0	1	821220			20746	4309	14963	15072	20347	20347					-0.10101799317703808
IEDKDVFQKF	10	Unmodified	_IEDKDVFQKF_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-MSMS	A375_MHC_IP_R1	1	423.955810546875	3	423.555561	1267.64485	0.06575	2.7849E-05	0.32332	0.00013694	0.38907	0.00016479	423.55568241577794	53.809	0.45757	53.809	53.555	54.013	0					23	8	4	0	0	0	0.32528	1	19217	19217		28.181	14.663	1	2443200			20747	1268	14964	15073	20348	20348					0.021736489863769748
IEDKDVFQKF	10	Unmodified	_IEDKDVFQKF_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-MATCH	A375_MHC_IP_R2	2		3	423.555561	1267.64485	-0.70627	-0.00029914	0.16812	7.121E-05	-0.53815	-0.00022793	423.5555820435733	53.038	0.40613	53.789	53.588	53.995	0.75105	-0.010311	-0.0001309	NaN	28.181	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1047600			20748	1268	14964	15073							0.021736489863769748
IEDLDLLECY	10	Unmodified	_IEDLDLLECY_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MSMS	A375_MHC_IP_R2	2	613.2211303710938	2	613.286479	1224.55841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.94	1	74.678	74.178	75.178	0.73752								0	0	0	0.14179	1	28065	28065		29.082	3.6823	1				20749	9182	14965	15074	20349	20349					-0.04489098630483568
IEDLPASHF	9	Unmodified	_IEDLPASHF_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-SECPEP	A375_MHC_IP_R2	2	515.1792602539062	2	514.756007	1027.49746	-1.124	-0.00057859	-0.93818	-0.00048293	-2.0622	-0.0010615	514.7555095439316	58.848	0.45639	59.595	59.286	59.742	0.74714					11	8	2	0	0	0	0.3213	1	22214	22214		46.021	7.8698	1	1298100			20750	8538	14966	15075	20350	20350					-0.01518822827756594
IEDNPHPRLW	10	Unmodified	_IEDNPHPRLW_					0	0	0		nc|ENSG00000118965|Q9P2L0|WDR35;ENSG00000118965|ENST00000281405|WDR35;ENST00000445063.5_1_2:20113365-20153734:-|nuORF	nc|ENSG00000118965|Q9P2L0|WDR35	nc|ENSG00000118965|Q9P2L0|WDR35	MULTI-SECPEP	A375_MHC_IP_R2	2	426.6190490722656	3	426.219283	1275.63602	-0.021263	-9.0627E-06	-0.23442	-9.9913E-05	-0.25568	-0.00010898	426.2190702475678	47.489	0.50964	48.25	48.022	48.532	0.76128					19	9	3	0	0	0	0.55307	1	17846	17846		37.771	19.432	1	2955100			20751	3566	14967	15076	20351	20351					0.00922720140556521
IEDNPHPRLW	10	Unmodified	_IEDNPHPRLW_					0	0	0		nc|ENSG00000118965|Q9P2L0|WDR35;ENSG00000118965|ENST00000281405|WDR35;ENST00000445063.5_1_2:20113365-20153734:-|nuORF	nc|ENSG00000118965|Q9P2L0|WDR35	nc|ENSG00000118965|Q9P2L0|WDR35	MULTI-MATCH	A375_MHC_IP_R1	1		3	426.219283	1275.63602	0.2331	9.9352E-05	-0.72855	-0.00031052	-0.49545	-0.00021117	426.21887249328165	48.326	0.65882	48.326	47.97	48.629	0	0.038004	-0.00048134	NaN	37.771	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2396700			20752	3566	14967	15076							0.00922720140556521
IEDPGTLHIW	10	Unmodified	_IEDPGTLHIW_					0	0	0		ENSG00000198753|ENST00000361971|PLXNB3;nc|ENSG00000198753|Q9ULL4-2|PLXNB3;ENST00000485980.1_1_X:153042697-153043186:+|nuORF	ENSG00000198753|ENST00000361971|PLXNB3	ENSG00000198753|ENST00000361971|PLXNB3	MULTI-MSMS	A375_MHC_IP_R1	1	590.7234497070312	2	590.803488	1179.59242	-0.094564	-5.5869E-05	-0.4606	-0.00027212	-0.55516	-0.00032799	590.8032537605325	92.858	1.376	92.858	92.463	93.84	0					71	26	4	0	0	0	0.0036544	1	34189	34189		128.37	86.526	1	52926000			20753	9317	14968	15077	20352	20352					0.00981110643442662
IEDPGTLHIW	10	Unmodified	_IEDPGTLHIW_					0	0	0		ENSG00000198753|ENST00000361971|PLXNB3;nc|ENSG00000198753|Q9ULL4-2|PLXNB3;ENST00000485980.1_1_X:153042697-153043186:+|nuORF	ENSG00000198753|ENST00000361971|PLXNB3	ENSG00000198753|ENST00000361971|PLXNB3	MULTI-MSMS	A375_MHC_IP_R2	2	590.7235717773438	2	590.803488	1179.59242	-0.48293	-0.00028532	-0.078982	-4.6663E-05	-0.56191	-0.00033198	590.8034996425245	92.164	1.8751	92.903	92.381	94.256	0.73902					86	36	4	0	0	0	0.0036544	4	35098	34998;35098;35170;35233		158.2	128.37	1	50877000			20754	9317	14968	15077	20353;20354;20355;20356	20354					0.00981110643442662
IEDPQIQAHW	10	Unmodified	_IEDPQIQAHW_					0	0	0		ENSG00000042429|ENST00000251871|MED17	ENSG00000042429|ENST00000251871|MED17	ENSG00000042429|ENST00000251871|MED17	MULTI-SECPEP	A375_MHC_IP_R1	1	619.2039184570312	2	618.80402	1235.59349	-0.47715	-0.00029526	0.26827	0.00016601	-0.20888	-0.00012926	618.8040145376249	65.219	0.50795	65.219	64.954	65.462	0					26	9	4	0	0	0	0.028212	1	23601	23601		93.166	66.898	1	4513900			20755	1173	14969	15078	20357	20357					-0.014886749876495742
IEDPQIQAHW	10	Unmodified	_IEDPQIQAHW_					0	0	0		ENSG00000042429|ENST00000251871|MED17	ENSG00000042429|ENST00000251871|MED17	ENSG00000042429|ENST00000251871|MED17	MULTI-SECPEP	A375_MHC_IP_R2	2	619.203369140625	2	618.80402	1235.59349	-0.63187	-0.000391	0.068921	4.2648E-05	-0.56295	-0.00034835	618.8038267004647	64.502	0.61052	65.243	65.004	65.615	0.74023					25	11	3	0	0	0	0.023912	1	24473	24473		114.19	77.68	1	4182300			20756	1173	14969	15078	20358	20358					-0.014886749876495742
IEDQIWCLV	9	Unmodified	_IEDQIWCLV_					0	0	0			REV__ENSG00000228486|ENST00000627399|C2orf92	REV__ENSG00000228486|ENST00000627399|C2orf92	MULTI-MSMS	A375_MHC_IP_R2	2	560.1808471679688	2	559.781167	1117.54778	-0.65737	-0.00036798	-0.30745	-0.00017211	-0.96482	-0.00054009	559.7810395702028	83.038	1.0113	83.778	83.191	84.203	0.73962					52	19	3	0	0	0	0.4867	1	31638	31638		20.454	1.1966	1	16676000	+		20757	22734	14970	15079	20359	20359					-0.006290364942742599
IEDRQYKDY	9	Unmodified	_IEDRQYKDY_					0	0	0		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-SECPEP	A375_MHC_IP_R1	1	410.93145751953125	3	410.531415	1228.57242	0.089843	3.6883E-05	-0.15269	-6.2685E-05	-0.062851	-2.5802E-05	410.5314209145986	20.208	0.55633	20.208	19.98	20.536	0					26	10	4	0	0	0	0.57806	1	5142	5142		30.703	16.298	1	4971800			20758	4043	14971	15080	20360	20360					-0.032726850871767965
IEDRQYKDY	9	Unmodified	_IEDRQYKDY_					0	0	0		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-SECPEP	A375_MHC_IP_R2	2	410.93121337890625	3	410.531415	1228.57242	-0.26323	-0.00010806	-0.37917	-0.00015566	-0.6424	-0.00026373	410.53136023891636	19.183	0.3023	19.786	19.633	19.935	0.60308					13	5	3	0	0	0	0.75782	1	5889	5889		14.957	2.7824	1	4043900			20759	4043	14971	15080	20361	20361					-0.032726850871767965
IEDSEENGVF	10	Unmodified	_IEDSEENGVF_					0	0	0		ENSG00000029559|ENST00000226284|IBSP	ENSG00000029559|ENST00000226284|IBSP	ENSG00000029559|ENST00000226284|IBSP	MULTI-SECPEP	A375_MHC_IP_R2	2	569.1714477539062	2	569.748576	1137.4826	-0.31964	-0.00018211	3.1047	0.0017689	2.7851	0.0015868	570.2530953106218	82.874	0.80673	83.614	83.192	83.998	0.74004					25	15	3	0	0	0	0.92389	1	31348	31348		7.2892	0	1	1769200			20760	1106	14972	15081	20362	20362					-0.08064359486411377
IEDSYLFR	8	Unmodified	_IEDSYLFR_					0	0	0			REV__BTBD1|p.V141I|1|0.27|ENSG00000064726|chr15:83056526-83056526|C/T|missense_variant	REV__BTBD1|p.V141I|1|0.27|ENSG00000064726|chr15:83056526-83056526|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	521.66455078125	2	521.763832	1041.51311	-0.61035	-0.00031846	0.10437	5.4456E-05	-0.50598	-0.000264	521.7639031585804	105.99	0.81513	106.75	106.27	107.09	0.75977					32	15	3	0	0	0	0.77515	1	39956	39956		12.532	2.3482	1	5061100	+		20761	15536	14973	15082	20363	20363					-0.00598536310712916
IEDVRLFLNKI	11	Unmodified	_IEDVRLFLNKI_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	A375_MHC_IP_R2	2	680.2014770507812	2	680.403369	1358.79219	-1.1283	-0.00076769	2.9244	0.0019898	1.7961	0.0012221	680.4057161970582	37.324	0.15214	38.095	37.968	38.12	0.7709					4	2	2	0	0	0	0.99227	1	13657	13657		9.3831	0	1	1194200			20762	4099;14587	14974	15083	20364	20364					0.1271416559118279
IEDVWGENV	9	Unmodified	_IEDVWGENV_					0	0	0		nc|ENSG00000196091|Q00872-5|MYBPC1;nc|ENSG00000196091|Q00872-3|MYBPC1;nc|ENSG00000196091|Q00872-9|MYBPC1;nc|ENSG00000196091|Q00872-8|MYBPC1;nc|ENSG00000196091|Q00872-7|MYBPC1;nc|ENSG00000196091|Q00872|MYBPC1;nc|ENSG00000196091|Q00872-10|MYBPC1;nc|ENSG00000196091|Q00872-2|MYBPC1;ENSG00000196091|ENST00000361466|MYBPC1;nc|ENSG00000196091|Q00872-6|MYBPC1	nc|ENSG00000196091|Q00872-5|MYBPC1	nc|ENSG00000196091|Q00872-5|MYBPC1	MSMS	A375_MHC_IP_R1	1	530.6873779296875	2	530.750921	1059.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.018	1	43.018	42.518	43.518	0								0	0	0	0.15069	1	14936	14936		20.454	0.039092	1				20763	8992	14975	15084	20365	20365					-0.040074305529969934
IEDVWGENV	9	Unmodified	_IEDVWGENV_					0	0	0		nc|ENSG00000196091|Q00872-5|MYBPC1;nc|ENSG00000196091|Q00872-3|MYBPC1;nc|ENSG00000196091|Q00872-9|MYBPC1;nc|ENSG00000196091|Q00872-8|MYBPC1;nc|ENSG00000196091|Q00872-7|MYBPC1;nc|ENSG00000196091|Q00872|MYBPC1;nc|ENSG00000196091|Q00872-10|MYBPC1;nc|ENSG00000196091|Q00872-2|MYBPC1;ENSG00000196091|ENST00000361466|MYBPC1;nc|ENSG00000196091|Q00872-6|MYBPC1	nc|ENSG00000196091|Q00872-5|MYBPC1	nc|ENSG00000196091|Q00872-5|MYBPC1	MSMS	A375_MHC_IP_R2	2	530.7058715820312	2	530.750921	1059.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.405	1	43.178	42.678	43.678	0.7724								0	0	0	0.14767	1	15774	15774		25.399	4.9457	1				20764	8992	14975	15084	20366	20366					-0.040074305529969934
IEEAYKKLDA	10	Unmodified	_IEEAYKKLDA_					0	0	0		ENSG00000031691|ENST00000335783|CENPQ	ENSG00000031691|ENST00000335783|CENPQ	ENSG00000031691|ENST00000335783|CENPQ	MULTI-SECPEP	A375_MHC_IP_R1	1	393.9606628417969	3	393.880044	1178.6183	-0.35218	-0.00013872	-3.2924	-0.0012968	-3.6446	-0.0014355	394.2132176004847	29.169	0.25596	29.169	28.996	29.252	0					7	4	2	0	0	0	0.93407	1	9049	9049		10.315	4.5318	1	1044400			20765	1113	14976	15085	20367	20367					0.03613960095049151
IEEDERCY	8	Unmodified	_IEEDERCY_					0	0	0			REV__MEN1|p.H438Pfs*7|1|0.2|ENSG00000133895|chr11:64805073-64805088|GGCCCAGCCCACATGC/-|frameshift_variant	REV__MEN1|p.H438Pfs*7|1|0.2|ENSG00000133895|chr11:64805073-64805088|GGCCCAGCCCACATGC/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	529.1177978515625	2	528.718764	1055.42298	-0.43765	-0.00023139	-1.0232	-0.00054099	-1.4609	-0.00077238	528.7181908911739	90.423	0.91521	91.157	90.651	91.566	0.7345					38	17	3	0	0	0	0.77123	2	34319	34319;34557		14.582	2.9414	1	2792800	+		20766	18740	14977	15086	20368;20369	20368					-0.10251953701435923
IEEDERCY	8	Unmodified	_IEEDERCY_					0	0	0			REV__MEN1|p.H438Pfs*7|1|0.2|ENSG00000133895|chr11:64805073-64805088|GGCCCAGCCCACATGC/-|frameshift_variant	REV__MEN1|p.H438Pfs*7|1|0.2|ENSG00000133895|chr11:64805073-64805088|GGCCCAGCCCACATGC/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	529.1177978515625	2	528.718764	1055.42298	-0.43765	-0.00023139	-1.0232	-0.00054099	-1.4609	-0.00077238	528.7181908911739	90.423	0.91521	91.157	90.651	91.566	0.7345					38	17	3	0	0	0	0.97144	1	34319	34319		14.582	10.252	1	2792800	+		20767	18740	14977	15086	20370	20370					-0.10251953701435923
IEEDKESL	8	Unmodified	_IEEDKESL_					0	0	0			REV__ENSG00000144821|ENST00000693548|MYH15	REV__ENSG00000144821|ENST00000693548|MYH15	MSMS	A375_MHC_IP_R1	1	481.66192626953125	2	481.73748	961.460406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.452	1	95.452	94.952	95.952	0								0	0	0	0.16876	1	35083	35083		14.582	0	1		+		20768	19448	14978	15087	20371	20371					-0.021865391641881615
IEEDMWGDP	9	Unmodified	_IEEDMWGDP_					0	0	0			REV__SAMD12|p.G166E|1|0.5|ENSG00000177570|chr8:118379526-118379526|C/T|missense_variant	REV__SAMD12|p.G166E|1|0.5|ENSG00000177570|chr8:118379526-118379526|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	546.2285766601562	2	546.221139	1090.42773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.527	1	72.527	72.027	73.027	0								0	0	0	0.15283	1	26387	26387		16.942	0	1		+		20769	27906	14979	15088	20372	20372					-0.1138706955869111
IEEDTWQKYY	10	Unmodified	_IEEDTWQKYY_					0	0	0		nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	MSMS	A375_MHC_IP_R1	1	687.7472534179688	2	687.81425	1373.61395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.508	1	87.508	87.008	88.008	0								0	0	0	0.15308	1	32109	32109		10.824	0.75	1				20770	6175	14980	15089	20373	20373					-0.05791549118498551
IEEEQEDPY	9	Unmodified	_IEEEQEDPY_					0	0	0		CON__ENSEMBL:ENSBTAP00000016046	CON__ENSEMBL:ENSBTAP00000016046	CON__ENSEMBL:ENSBTAP00000016046	MULTI-MSMS	A375_MHC_IP_R1	1	576.6403198242188	2	576.240583	1150.46661	-0.26581	-0.00015317	-0.069948	-4.0307E-05	-0.33575	-0.00019347	576.240477748384	24.665	0.45508	24.665	24.498	24.953	0					18	8	3	0	0	0	0.2487	1	7065	7065		34.402	11.253	1	8638900		+	20771	569	14981	15090	20374	20374					-0.10260065723332445
IEEEQEDPY	9	Unmodified	_IEEEQEDPY_					0	0	0		CON__ENSEMBL:ENSBTAP00000016046	CON__ENSEMBL:ENSBTAP00000016046	CON__ENSEMBL:ENSBTAP00000016046	MULTI-MSMS	A375_MHC_IP_R2	2	576.639892578125	2	576.240583	1150.46661	-0.46283	-0.0002667	0.22067	0.00012716	-0.24215	-0.00013954	576.2404266041596	24.238	0.35528	24.882	24.705	25.06	0.64368					12	6	2	0	0	0	0.094655	1	7937	7937		51.63	15.586	1	9956700		+	20772	569	14981	15090	20375	20375					-0.10260065723332445
IEEFKPPESN	10	Unmodified	_IEEFKPPESN_					0	0	0		nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3;nc|ENSG00000117625|Q9P2K3|RCOR3;ENSG00000117625|ENST00000419091|RCOR3	nc|ENSG00000117625|Q9P2K3-2|RCOR3	nc|ENSG00000117625|Q9P2K3-2|RCOR3	MULTI-SECPEP	A375_MHC_IP_R2	2	396.5935363769531	3	397.196033	1188.56627	-0.43705	-0.0001736	-0.66526	-0.00026424	-1.1023	-0.00043783	397.1957971422097	21.284	0.60813	21.903	21.575	22.184	0.61932					24	11	3	0	0	0	0.93407	1	6592	6592		2.4348	0	1	9775800			20773	3502	14982	15091	20376	20376					-0.020472033186933913
IEEIDSTIIK	10	Unmodified	_IEEIDSTIIK_					0	0	0			REV__tr|U7STA3|U7STA3_FUSNUdTTP/UTPpyrophosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01343PE=3SV=1	REV__tr|U7STA3|U7STA3_FUSNUdTTP/UTPpyrophosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01343PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	581.3792724609375	2	580.824086	1159.63362	-0.30515	-0.00017724	1.1233	0.00065246	0.81818	0.00047522	580.8241904531735	76.603	0.45745	77.344	77.095	77.553	0.74052					10	8	2	0	0	0	0.69306	1	29101	29101		13.906	3.8321	1	1724500	+		20774	28468	14983	15092	20377	20377					0.060188268922502175
IEEKIHPEE	9	Unmodified	_IEEKIHPEE_					0	0	0			REV__nc|ENSG00000134532|P35711-4|SOX5	REV__nc|ENSG00000134532|P35711-4|SOX5	MULTI-SECPEP	A375_MHC_IP_R1	1	562.3721313476562	2	562.285128	1122.5557	-0.4545	-0.00025556	-0.7474	-0.00042025	-1.2019	-0.00067581	562.2849814710745	73.385	0.81112	73.385	73.082	73.893	0					17	15	2	0	0	0	0.65246	1	26672	26672		15.847	5.7733	1	1690400	+		20775	18785	14984	15093	20378	20378					-0.0006718597312556085
IEEKKTGQ	8	Unmodified	_IEEKKTGQ_					0	0	0			REV__ENST00000533770.5_1_11:9861043-10215451:-|nuORF	REV__ENST00000533770.5_1_11:9861043-10215451:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	933.6213989257812	1	932.504737	931.497461	0.19082	0.00017794	-0.06374	-5.9438E-05	0.12708	0.0001185	932.5051922020474	127.94	0.40373	127.94	127.82	128.23	0					10	7	2	0	0	0	0.7766	1	49066	49066		7.2892	7.2892	1	17568000	+		20776	18736	14985	15094	20379	20379					0.028971771722581252
IEELIREHL	9	Unmodified	_IEELIREHL_					0	0	0			REV__nc|ENSG00000134278|Q08AE8-4|SPIRE1	REV__nc|ENSG00000134278|Q08AE8-4|SPIRE1	MULTI-MSMS	A375_MHC_IP_R2	2	384.952392578125	3	384.552151	1150.63462	-0.04854	-1.8666E-05	0.22586	8.6856E-05	0.17732	6.819E-05	384.55223672946636	70.048	0.50888	70.782	70.488	70.997	0.73421					15	9	2	0	0	0	0.32092	1	26559	26559		21.59	0	1	2606700	+		20777	18766	14986	15095	20380	20380					0.06533086051808823
IEELLRTLF	9	Unmodified	_IEELLRTLF_					0	0	0			REV__ENSG00000182963|ENST00000592524|GJC1	REV__ENSG00000182963|ENST00000592524|GJC1	MSMS	A375_MHC_IP_R2	2	567.163818359375	2	567.331882	1132.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.761	1	69.496	68.996	69.996	0.73511								0	0	0	0.14905	1	26056	26056		23.148	3.8914	1		+		20778	21721	14987	15096	20381	20381					0.0881915819995811
IEELPKQLF	9	Unmodified	_IEELPKQLF_					0	0	0		nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN;nc|ENSG00000033122|Q96NW7-3|LRRC7;ENST00000415775.2_1_1:70225872-70503822:+|nuORF;LRRC7|p.A473Gfs*8|1|0.15|ENSG00000033122|chr1:70021115-70021116|-/GTGATAGATA|frameshift_variant;nc|ENSG00000033122|Q96NW7-2|LRRC7;nc|ENSG00000033122|Q96NW7|LRRC7;ENSG00000033122|ENST00000651989|LRRC7	nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000033122|Q96NW7-2|LRRC7	nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-SECPEP	A375_MHC_IP_R1	1	372.9573059082031	3	372.881497	1115.62266	0.28693	0.00010699	-2.8315	-0.0010558	-2.5446	-0.00094884	372.8794977292752	53.41	0.20367	53.41	53.25	53.453	0					5	3	2	0	0	0	0.80332	1	18982	18982		2.4985	0.21571	1	629890			20779	3113;1122	14988	15097	20382	20382					0.06947469308602194
IEELSARR	8	Unmodified	_IEELSARR_					0	0	0			REV__SNRK|p.K705Rfs*9|1|0.48|ENSG00000163788|chr3:43348373-43348383|AGTTTTTCTCT/-|frameshift_variant	REV__SNRK|p.K705Rfs*9|1|0.48|ENSG00000163788|chr3:43348373-43348383|AGTTTTTCTCT/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	487.1839294433594	2	487.274898	972.535243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.56	1	131.75	131.25	132.25	0.18953								0	0	0	0.16876	1	51752	51752		30.225	8.4782	1		+		20780	20411	14989	15098	20383	20383					0.04787688157705361
IEELSEHLK	9	Unmodified	_IEELSEHLK_					0	0	0			REV__ENSG00000138778|ENST00000265148|CENPE	REV__ENSG00000138778|ENST00000265148|CENPE	MULTI-SECPEP	A375_MHC_IP_R1	1	366.64495849609375	3	366.532756	1096.57644	0.28591	0.00010479	0.49653	0.00018199	0.78244	0.00028679	366.5328650711374	37.174	0.40602	37.174	36.945	37.351	0					12	7	2	0	0	0	0.75519	1	12540	12540		1.9064	0	1	2829300	+		20781	19122	14990	15099	20384	20384					0.03201404406513575
IEELSEHLK	9	Unmodified	_IEELSEHLK_					0	0	0			REV__ENSG00000138778|ENST00000265148|CENPE	REV__ENSG00000138778|ENST00000265148|CENPE	MULTI-SECPEP	A375_MHC_IP_R2	2	365.9607849121094	3	366.532756	1096.57644	-0.01483	-5.4355E-06	-0.07807	-2.8615E-05	-0.092899	-3.4051E-05	366.53262772573225	36.231	0.40849	37.001	36.749	37.157	0.7709					12	7	2	0	0	0	0.75519	1	13105	13105		3.8763	0.27984	1	1763100	+		20782	19122	14990	15099	20385	20385					0.03201404406513575
IEEMESHSV	9	Unmodified	_IEEMESHSV_					0	0	0		ENST00000526132.5_1_1:52521946-52551793:+|nuORF	ENST00000526132.5_1_1:52521946-52551793:+|nuORF	ENST00000526132.5_1_1:52521946-52551793:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	530.6448364257812	2	530.734414	1059.45428	-0.41967	-0.00022273	0.041822	2.2196E-05	-0.37785	-0.00020054	530.7344358704182	99.38	0.86445	100.14	99.758	100.62	0.75977					41	16	4	0	0	0	0.55818	1	37873	37873		16.942	9.0321	1	14115000			20783	13078	14991	15100	20386	20386					-0.07307380667339203
IEENIGWMD	9	Unmodified	_IEENIGWMD_					0	0	0		nc|ENSG00000164307|Q9NZ08-2|ERAP1;ENSG00000164307|ENST00000443439|ERAP1	nc|ENSG00000164307|Q9NZ08-2|ERAP1	nc|ENSG00000164307|Q9NZ08-2|ERAP1	MSMS	A375_MHC_IP_R2	2	553.7098999023438	2	553.744782	1105.47501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.035	1	87.768	87.268	88.268	0.733								0	0	0	0.15486	1	33098	33098		11.64	0.14559	1				20784	6821	14992	15101	20387	20387					-0.07350790287682685
IEENKVRQY	9	Unmodified	_IEENKVRQY_					0	0	0		ENSG00000001626|ENST00000003084|CFTR;nc|ENSG00000001626|P13569-2|CFTR;CFTR|p.D1425N|1|0.34|ENSG00000001626|chr7:117666938-117666938|G/A|missense_variant	ENSG00000001626|ENST00000003084|CFTR	ENSG00000001626|ENST00000003084|CFTR	MULTI-MSMS	A375_MHC_IP_R1	1	590.2244262695312	2	589.811845	1177.60914	-0.24697	-0.00014567	-0.21025	-0.00012401	-0.45722	-0.00026968	589.8117531248184	28.669	0.4547	28.669	28.44	28.895	0					26	8	4	0	0	0	0.27715	1	8824	8824		32.305	1.0371	1	20305000			20785	848	14993	15102	20388	20388					0.027436115293767216
IEEPLTIQI	9	Unmodified	_IEEPLTIQI_					0	0	0			REV__tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1	REV__tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	352.9485778808594	3	352.537619	1054.59103	-0.28467	-0.00010036	1.126	0.00039696	0.84134	0.0002966	352.5379534948098	40.225	0.25375	41	40.828	41.082	0.77451					8	4	2	0	0	0	0.77003	1	14857	14857		11.495	11.495	1	541480	+		20786	28409	14994	15103	20389	20389					0.06591476554672226
IEEQAKTFL	9	Unmodified	_IEEQAKTFL_					0	0	0		ENSG00000130234|ENST00000252519|ACE2	ENSG00000130234|ENST00000252519|ACE2	ENSG00000130234|ENST00000252519|ACE2	MULTI-SECPEP	A375_MHC_IP_R1	1	360.6292724609375	3	360.197485	1077.57063	-0.20052	-7.2227E-05	0.09015	3.2472E-05	-0.11037	-3.9755E-05	360.53167905260875	30.527	0.35184	30.527	30.351	30.703	0					9	6	2	0	0	0	0.74412	1	9702	9702		3.8763	0	1	1669900			20787	4231	14995	15104	20390	20390					0.03494305894855643
IEESCTPGTY	10	Unmodified	_IEESCTPGTY_					0	0	0			REV__NOTCH4|p.M730I|1|0.28|ENSG00000204301|chr6:32213818-32213818|C/T|missense_variant	REV__NOTCH4|p.M730I|1|0.28|ENSG00000204301|chr6:32213818-32213818|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	550.1834716796875	2	550.234247	1098.45394	-0.8884	-0.00048883	0.20998	0.00011554	-0.67842	-0.00037329	550.2343615350561	51.068	0.60723	51.822	51.513	52.12	0.75406					20	11	2	0	0	0	0.57505	1	19237	19237		22.736	0	1	5850800	+		20788	27622	14996	15105	20391	20391					-0.0913480038718717
IEESDLCDVTS	11	Unmodified	_IEESDLCDVTS_					0	0	0			REV__SCN10A|p.P1094S|1|0.48|ENSG00000185313|chr3:38723502-38723502|G/A|missense_variant	REV__SCN10A|p.P1094S|1|0.48|ENSG00000185313|chr3:38723502-38723502|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	404.1242370605469	3	404.176309	1209.5071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.163	1	59.163	58.663	59.663	0								0	0	0	0.1628	1	21275	21275		4.1166	1.6818	1		+		20789	27916	14997	15106	20392	20392					-0.08927467395210442
IEESKLEQY	9	Unmodified	_IEESKLEQY_					0	0	0			REV__ENST00000476381.5_1_X:15447791-15497935:-|nuORF	REV__ENST00000476381.5_1_X:15447791-15497935:-|nuORF	MSMS	A375_MHC_IP_R1	1	569.7529296875	2	569.784961	1137.55537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.604	1	84.604	84.104	85.104	0								0	0	0	0.15411	1	30994	30994		14.838	0.25658	1		+		20790	16875	14998	15107	20393	20393					-0.00790605692986901
IEESNEFSQY	10	Unmodified	_IEESNEFSQY_					0	0	0		tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	MSMS	A375_MHC_IP_R1	1	623.2423095703125	2	623.267133	1244.51971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.822	1	73.822	73.322	74.322	0								0	0	0	0.15207	1	26887	26887		13.906	3.8321	1				20791	29568	14999	15108	20394	20394					-0.09276687940632655
IEESPAELQVA	11	Unmodified	_IEESPAELQVA_					0	0	0			REV__tr|U7T4B0|U7T4B0_FUSNUGlutaconateCoA-transferasesubunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00405PE=3SV=1	REV__tr|U7T4B0|U7T4B0_FUSNUGlutaconateCoA-transferasesubunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00405PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	592.7214965820312	2	593.303518	1184.59248	-0.36685	-0.00021765	-3.9425	-0.0023391	-4.3094	-0.0025568	593.8029859880678	74.1	0.40506	74.1	73.792	74.197	0					9	7	2	0	0	0	0.90673	1	26928	26928		9.544	0	1	1469700	+		20792	28797	15000	15109	20395	20395					0.007570658527583873
IEETITTVVK	10	Unmodified	_IEETITTVVK_					0	0	0		nc|ENSG00000154358|Q5VST9-3|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	MSMS	A375_MHC_IP_R1	1	566.86474609375	2	566.826629	1131.63871	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.3	1	67.3	66.8	67.8	0								0	0	0	0.15365	1	24386	24386		6.2058	0	1				20793	14690	15001	15110	20396	20396					0.07815130754852362
IEEYDEDP	8	Unmodified	_IEEYDEDP_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R2	2	504.6551818847656	2	505.20347	1008.39239	-0.98062	-0.00049541	1.7214	0.00086965	0.74077	0.00037424	505.2042806924901	38.831	0.35847	39.605	39.401	39.76	0.77451					9	6	2	0	0	0	0.972	1	14252	14252		0.69038	0.69038	1	1121700	+		20794	19932	15002	15111	20397	20397					-0.11147408814849769
IEEYMEFI	8	Unmodified	_IEEYMEFI_					0	0	0			REV__ENSG00000221886|ENST00000408953|FAM200C	REV__ENSG00000221886|ENST00000408953|FAM200C	MULTI-MSMS	A375_MHC_IP_R1	1	537.6712036132812	2	537.246626	1072.4787	-0.5863	-0.00031499	-0.94131	-0.00050571	-1.5276	-0.0008207	537.2461726912562	54.525	0.40687	54.525	54.263	54.67	0					11	7	2	0	0	0	0.75322	2	19453	19453;19483		19.439	5.9311	1	798610	+		20795	22694	15003	15112	20398;20399	20398					-0.054641205138295845
IEEYMEFI	8	Unmodified	_IEEYMEFI_					0	0	0			REV__ENSG00000221886|ENST00000408953|FAM200C	REV__ENSG00000221886|ENST00000408953|FAM200C	MULTI-SECPEP	A375_MHC_IP_R1	1	537.6712036132812	2	537.246626	1072.4787	-0.5863	-0.00031499	-0.94131	-0.00050571	-1.5276	-0.0008207	537.2461726912562	54.525	0.40687	54.525	54.263	54.67	0					11	7	2	0	0	0	0.90224	1	19453	19453		19.439	10.092	1	798610	+		20796	22694	15003	15112	20400	20400					-0.054641205138295845
IEFDIPITY	9	Unmodified	_IEFDIPITY_					0	0	0		ENSG00000143222|ENST00000368003|UFC1;ENST00000473766.5_1_1:161123787-161127484:+|nuORF	ENSG00000143222|ENST00000368003|UFC1	ENSG00000143222|ENST00000368003|UFC1	MULTI-MSMS	A375_MHC_IP_R1	1	556.1889038085938	2	555.789515	1109.56448	-0.75915	-0.00042193	0.40253	0.00022372	-0.35662	-0.00019821	555.7896630667279	129.58	0.35616	129.58	129.45	129.8	0					14	6	4	0	0	0	0.0095277	1	49848	49848		108	33.574	1	20214000			20797	5360	15004	15113	20401	20401					0.014077876633336928
IEFDIPITY	9	Unmodified	_IEFDIPITY_					0	0	0		ENSG00000143222|ENST00000368003|UFC1;ENST00000473766.5_1_1:161123787-161127484:+|nuORF	ENSG00000143222|ENST00000368003|UFC1	ENSG00000143222|ENST00000368003|UFC1	MULTI-MSMS	A375_MHC_IP_R2	2	1110.7845458984375	1	1110.57175	1109.56448	0.068432	7.5999E-05	0.52378	0.00058169	0.59221	0.00065769	1110.5722304603826	129.4	0.50348	129.64	129.47	129.97	0.23946					14	9	3	0	0	0	0.0014061	1	50829	50829		149.99	68.382	1	42196000			20798	5360	15004	15113	20402	20402					0.014077876633336928
IEFDIPITY	9	Unmodified	_IEFDIPITY_					0	0	0		ENSG00000143222|ENST00000368003|UFC1;ENST00000473766.5_1_1:161123787-161127484:+|nuORF	ENSG00000143222|ENST00000368003|UFC1	ENSG00000143222|ENST00000368003|UFC1	MULTI-MSMS	A375_MHC_IP_R2	2	556.1895141601562	2	555.789515	1109.56448	-0.81598	-0.00045351	0.33576	0.00018661	-0.48022	-0.0002669	555.7897352612628	129.4	0.30246	129.64	129.47	129.77	0.23946					10	5	2	0	0	0	0.0097736	1	50859	50859		112.59	56.416	1	17443000			20799	5360	15004	15113	20403	20403					0.014077876633336928
IEFDIPITY	9	Unmodified	_IEFDIPITY_					0	0	0		ENSG00000143222|ENST00000368003|UFC1;ENST00000473766.5_1_1:161123787-161127484:+|nuORF	ENSG00000143222|ENST00000368003|UFC1	ENSG00000143222|ENST00000368003|UFC1	MULTI-MATCH	A375_MHC_IP_R1	1		1	1110.57175	1109.56448	-0.12807	-0.00014223	0.89703	0.00099622	0.76896	0.00085399	1110.5725840168752	129.58	0.35616	129.58	129.45	129.8	0	-0.033037	0.00027197	NaN	149.99	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65804000			20800	5360	15004	15113							0.014077876633336928
IEFPDPYKE	9	Unmodified	_IEFPDPYKE_					0	0	0			REV__nc|ENSG00000172349|Q14005-2|IL16	REV__nc|ENSG00000172349|Q14005-2|IL16	MULTI-SECPEP	A375_MHC_IP_R1	1	380.2539367675781	3	379.853607	1136.53899	0.11971	4.5473E-05	0.89742	0.00034089	1.0171	0.00038636	379.85389499758935	32.811	0.30211	32.811	32.585	32.887	0					8	5	2	0	0	0	0.69507	1	10655	10655		6.1918	6.1918	1	3132000	+		20801	21137	15005	15114	20404	20404					-0.023816868590984086
IEFPIQVHPY	10	Unmodified	_IEFPIQVHPY_					0	0	0			REV__ENSG00000115616|ENST00000233969|SLC9A2	REV__ENSG00000115616|ENST00000233969|SLC9A2	MULTI-SECPEP	A375_MHC_IP_R1	1	414.6404724121094	3	414.888763	1241.64446	0.16472	6.8342E-05	-3.7649	-0.001562	-3.6002	-0.0014937	415.2226860787962	27.132	0.25264	27.132	27.027	27.28	0					5	4	2	0	0	0	0.93041	1	8183	8183		7.9454	2.6485	1	1188300	+		20802	17900	15006	15115	20405	20405					0.03330274057202587
IEFQPPEAKKF	11	Unmodified	_IEFQPPEAKKF_					0	0	0		ENSG00000175931|ENST00000319380|UBE2O;ENST00000586409.5_1_17:74391712-74392192:-|nuORF	ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	MULTI-MSMS	A375_MHC_IP_R1	1	445.6431579589844	3	445.243206	1332.70779	-0.13048	-5.8095E-05	-0.081571	-3.6319E-05	-0.21205	-9.4414E-05	445.24312665015907	53.334	1.4228	53.334	52.438	53.861	0					78	27	4	0	0	0	0.57632	2	19090	18850;19090		25.155	15.391	1	13317000			20803	7989	15007	15116	20406;20407	20407					0.05474214774403663
IEFQPPEAKKF	11	Unmodified	_IEFQPPEAKKF_					0	0	0		ENSG00000175931|ENST00000319380|UBE2O;ENST00000586409.5_1_17:74391712-74392192:-|nuORF	ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	MULTI-MSMS	A375_MHC_IP_R2	2	445.64300537109375	3	445.243206	1332.70779	-0.82579	-0.00036768	0.22011	9.8001E-05	-0.60569	-0.00026968	445.24325509402627	52.563	1.4211	53.315	52.524	53.945	0.75225					75	27	4	0	0	0	0.67398	2	19920	19678;19920		17.572	7.8077	1	13831000			20804	7989	15007	15116	20408;20409	20409					0.05474214774403663
IEFSVQDRY	9	Unmodified	_IEFSVQDRY_					0	0	0		ENSG00000250821|ENST00000636125|EXOC1L	ENSG00000250821|ENST00000636125|EXOC1L	ENSG00000250821|ENST00000636125|EXOC1L	MULTI-SECPEP	A375_MHC_IP_R1	1	579.184326171875	2	578.785296	1155.55604	-0.23145	-0.00013396	-0.597	-0.00034553	-0.82844	-0.00047949	579.2865260175141	61.05	0.50961	61.05	60.922	61.432	0					18	9	3	0	0	0	0.67483	1	22060	22060		10.074	4.777	1	4285700			20805	9852	15008	15117	20410	20410					-0.01551766253282949
IEFTGDPHQF	10	Unmodified	_IEFTGDPHQF_					0	0	0		ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	MULTI-SECPEP	A375_MHC_IP_R2	2	596.1773071289062	2	595.77747	1189.54039	-0.65318	-0.00038915	1.1078	0.00066003	0.45466	0.00027088	595.7782533125192	65.232	0.40594	65.97	65.766	66.172	0.73812					13	7	2	0	0	0	0.54012	1	24758	24758		32.037	8.0169	1	1188400			20806	2932	15009	15118	20411	20411					-0.046800527703453554
IEGAKKSL	8	Unmodified	_IEGAKKSL_					0	0	0			REV__ENSG00000149136|ENST00000278412|SSRP1	REV__ENSG00000149136|ENST00000278412|SSRP1	MULTI-SECPEP	A375_MHC_IP_R1	1	422.60357666015625	2	423.258185	844.501818	0.033957	1.4373E-05	0.27235	0.00011527	0.30631	0.00012965	423.2583713867838	62.968	0.46192	62.968	62.711	63.173	0					13	8	2	0	0	0	0.972	1	22699	22699		9.3474	0	1	821070	+		20807	19663	15010	15119	20412	20412					0.07334686385820532
IEGAKKSL	8	Unmodified	_IEGAKKSL_					0	0	0			REV__ENSG00000149136|ENST00000278412|SSRP1	REV__ENSG00000149136|ENST00000278412|SSRP1	MULTI-MATCH	A375_MHC_IP_R2	2		2	423.258185	844.501818	-0.40801	-0.0001727	-0.094391	-3.9952E-05	-0.50241	-0.00021265	423.25810695120873	61.89	0.50434	62.633	62.37	62.874	0.74263	-0.16777	-0.00014449	NaN	9.3474	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	774270	+		20808	19663	15010	15119							0.07334686385820532
IEGDDDAGPDQ	11	Unmodified	_IEGDDDAGPDQ_					0	0	0			REV__ENSG00000137101|ENST00000259633|CD72	REV__ENSG00000137101|ENST00000259633|CD72	MSMS	A375_MHC_IP_R2	2	566.1554565429688	2	566.225465	1130.43638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.471	1	98.227	97.727	98.727	0.75586								0	0	0	0.16152	1	36995	36995		10.8	2.8894	1		+		20809	18986	15011	15120	20413	20413					-0.12362424388516047
IEGELTHLLN	10	Unmodified	_IEGELTHLLN_					0	0	0		EFCAB6|p.T1001I|1|0.39|ENSG00000186976|chr22:43590104-43590104|G/A|missense_variant	EFCAB6|p.T1001I|1|0.39|ENSG00000186976|chr22:43590104-43590104|G/A|missense_variant	EFCAB6|p.T1001I|1|0.39|ENSG00000186976|chr22:43590104-43590104|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	380.60821533203125	3	380.208273	1137.60299	0.56361	0.00021429	-0.96832	-0.00036816	-0.40471	-0.00015387	380.20784008120404	47.936	0.45459	47.936	47.718	48.173	0					15	8	2	0	0	0	0.67901	1	16901	16901		14.957	0.55178	1	2412800			20810	825	15012	15121	20414	20414					0.03969093297882864
IEGELTHLLN	10	Unmodified	_IEGELTHLLN_					0	0	0		EFCAB6|p.T1001I|1|0.39|ENSG00000186976|chr22:43590104-43590104|G/A|missense_variant	EFCAB6|p.T1001I|1|0.39|ENSG00000186976|chr22:43590104-43590104|G/A|missense_variant	EFCAB6|p.T1001I|1|0.39|ENSG00000186976|chr22:43590104-43590104|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	380.208273	1137.60299	0.22046	8.382E-05	-1.2697	-0.00048276	-1.0493	-0.00039894	380.5417968889139	46.979	0.71251	47.741	47.361	48.073	0.76128	-0.097781	-0.00029341	NaN	14.957	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2258300			20811	825	15012	15121							0.03969093297882864
IEGFIDEPI	9	Unmodified	_IEGFIDEPI_					0	0	0			REV__MAP2K3|p.L166F|1|0.11|ENSG00000034152|chr17:21302239-21302239|C/T|missense_variant	REV__MAP2K3|p.L166F|1|0.11|ENSG00000034152|chr17:21302239-21302239|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	516.6630859375	2	516.76604	1031.51753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.069	1	54.82	54.32	55.32	0.75105								0	0	0	0.15486	1	20410	20410		7.9102	0	1		+		20812	26983	15013	15122	20415	20415					0.0030292811218259885
IEGHIKKGKF	10	Unmodified	_IEGHIKKGKF_					0	0	0			REV__nc|ENSG00000008056|P17600-2|SYN1	REV__nc|ENSG00000008056|P17600-2|SYN1	MSMS	A375_MHC_IP_R2	2	578.9083251953125	2	578.84549	1155.67643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.272	1	94.011	93.511	94.511	0.73902								0	0	0	0.15465	1	35460	35460		5.7319	0	1		+		20813	16164	15014	15123	20416	20416					0.10481686530988554
IEGLRLKLK	9	Unmodified	_IEGLRLKLK_					0	0	0			REV__PIK3R3|p.S265L|1|0.21|ENSG00000117461|chr1:46055942-46055942|G/A|missense_variant	REV__PIK3R3|p.S265L|1|0.21|ENSG00000117461|chr1:46055942-46055942|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	357.6168212890625	3	357.241248	1068.70191	-0.24744	-8.8395E-05	0.32436	0.00011588	0.076923	2.748E-05	357.24126535246813	36.575	0.45638	36.575	36.339	36.795	0					21	8	3	0	0	0	0.6343	1	12239	12239		12.873	0.63195	1	4314300	+		20814	27780	15015	15124	20417	20417					0.17031161053387223
IEGSGKQVW	9	Unmodified	_IEGSGKQVW_					0	0	0		ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1	ENSG00000039523|ENST00000042381|RIPOR1	ENSG00000039523|ENST00000042381|RIPOR1	MULTI-SECPEP	A375_MHC_IP_R1	1	502.6747741699219	2	502.263999	1002.51345	-0.38491	-0.00019333	0.14291	7.1777E-05	-0.24201	-0.00012155	502.26413105470124	34.733	0.25284	34.733	34.557	34.81	0					6	4	2	0	0	0	0.40377	1	11475	11475		34.932	9.5328	1	3824400			20815	1159	15016	15125	20418	20418					0.012288834091350509
IEGSGKQVW	9	Unmodified	_IEGSGKQVW_					0	0	0		ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1	ENSG00000039523|ENST00000042381|RIPOR1	ENSG00000039523|ENST00000042381|RIPOR1	MULTI-SECPEP	A375_MHC_IP_R2	2	502.6743469238281	2	502.263999	1002.51345	-1.0842	-0.00054458	-0.26173	-0.00013146	-1.346	-0.00067603	502.26431977932316	34.021	0.45477	34.773	34.348	34.803	0.75225					12	8	3	0	0	0	0.61452	1	12231	12231		26.268	2.2476	1	3394900			20816	1159	15016	15125	20419	20419					0.012288834091350509
IEGTVKNISF	10	Unmodified	_IEGTVKNISF_					0	0	0			REV__PCDHB4|p.E295K|1|0.47|ENSG00000081818|chr5:141122881-141122881|G/A|missense_variant	REV__PCDHB4|p.E295K|1|0.47|ENSG00000081818|chr5:141122881-141122881|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	554.7061767578125	2	554.305864	1106.59717	-0.49933	-0.00027678	0.31401	0.00017406	-0.18532	-0.00010272	554.3059619428805	98.067	0.81357	98.067	97.743	98.557	0					35	15	5	0	0	0	0.38461	1	36055	36055		47.594	5.6388	1	4656300	+		20817	27735	15017	15126	20420	20420					0.04813994786195508
IEHALGLGPA	10	Unmodified	_IEHALGLGPA_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	A375_MHC_IP_R2	2	489.6737365722656	2	489.274367	976.53418	-0.8984	-0.00043956	0.20313	9.9388E-05	-0.69527	-0.00034018	489.27421145208626	60.026	0.45542	60.773	60.553	61.008	0.74714					13	8	2	0	0	0	0.58828	1	22733	22733		21.747	1.293	1	1370200			20818	4338	15018	15127	20421	20421					0.04497473788796924
IEHGIITNW	9	Unmodified	_IEHGIITNW_					0	0	0		ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000159251|ENST00000290378|ACTC1	ENSG00000159251|ENST00000290378|ACTC1	MULTI-SECPEP	A375_MHC_IP_R1	1	542.1848754882812	2	541.785099	1081.55564	-0.63092	-0.00034182	0.23065	0.00012496	-0.40027	-0.00021686	541.7852039566988	64.23	1.4195	64.23	63.786	65.206	0					50	27	2	0	0	0	0.16229	1	23173	23173		57.471	21.427	1	69988000			20819	5418	15019	15128	20422	20422					0.01812858817538654
IEHGIITNW	9	Unmodified	_IEHGIITNW_					0	0	0		ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000159251|ENST00000290378|ACTC1	ENSG00000159251|ENST00000290378|ACTC1	MULTI-MSMS	A375_MHC_IP_R2	2	542.1845703125	2	541.785099	1081.55564	-0.77994	-0.00042256	-0.17796	-9.6416E-05	-0.9579	-0.00051897	541.7849386169077	63.374	2.1859	64.114	63.734	65.92	0.74022					74	42	3	0	0	0	0.033557	1	23968	23968		71.922	28.064	1	72147000			20820	5418	15019	15128	20423	20423					0.01812858817538654
IEHGIVTNW	9	Unmodified	_IEHGIVTNW_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000436287.1_1_1:224052226-224052508:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-SECPEP	A375_MHC_IP_R1	1	534.1851806640625	2	534.777274	1067.53999	-0.57717	-0.00030866	-0.58904	-0.00031501	-1.1662	-0.00062367	534.7767775211231	62.391	0.81873	62.391	62.148	62.966	0					27	15	3	0	0	0	0.4261	1	22540	22540		18.146	8.0724	1	2461900			20821	1615	15020	15129	20424	20424					0.008925723004722386
IEHGVFEI	8	Unmodified	_IEHGVFEI_					0	0	0		FREM1|p.T1490I|1|0.53|ENSG00000164946|chr9:14776177-14776177|G/A|missense_variant	FREM1|p.T1490I|1|0.53|ENSG00000164946|chr9:14776177-14776177|G/A|missense_variant	FREM1|p.T1490I|1|0.53|ENSG00000164946|chr9:14776177-14776177|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	472.6475830078125	2	472.247818	942.481082	-0.35777	-0.00016895	0.38821	0.00018333	0.030441	1.4376E-05	472.2479465856003	94.386	0.55758	95.13	94.869	95.426	0.74474					16	10	2	0	0	0	0.7338	1	35907	35907		24.674	0	1	1053000			20822	14016	15021	15130	20425	20425					0.007540960061305668
IEHLFCMY	8	Unmodified	_IEHLFCMY_					0	0	0		AASS|p.P375L|1|0.39|ENSG00000008311|chr7:122113640-122113640|G/A|missense_variant	AASS|p.P375L|1|0.39|ENSG00000008311|chr7:122113640-122113640|G/A|missense_variant	AASS|p.P375L|1|0.39|ENSG00000008311|chr7:122113640-122113640|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	528.6390380859375	2	528.238081	1054.46161	-0.73475	-0.00038812	-4.1742	-0.002205	-4.909	-0.0025931	528.7354573386111	84.425	1.271	84.425	84.141	85.412	0					49	24	4	0	0	0	0.90224	1	31029	31029		26.341	4.5946	1	6285700			20823	2	15022	15131	20426	20426					-0.06344319600611925
IEHLIRFRLPW	11	Unmodified	_IEHLIRFRLPW_					0	0	0			REV__ENST00000522965.1_1_8:90770176-90802641:+|nuORF	REV__ENST00000522965.1_1_8:90770176-90802641:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	494.1683654785156	3	493.957623	1478.85104	-0.36058	-0.00017811	-0.93423	-0.00046147	-1.2948	-0.00063958	494.29133281579084	73.917	0.50637	73.917	73.64	74.146	0					21	9	3	0	0	0	0.99916	1	26985	26985		2.4348	2.4348	1	796190	+		20824	17313	15023	15132	20427	20427					0.13076686676186
IEHSRYLSL	9	Unmodified	_IEHSRYLSL_					0	0	0		nc|ENSG00000184012|O15393-2|TMPRSS2	nc|ENSG00000184012|O15393-2|TMPRSS2	nc|ENSG00000184012|O15393-2|TMPRSS2	MULTI-SECPEP	A375_MHC_IP_R1	1	559.703369140625	2	559.303655	1116.59276	-0.5882	-0.00032898	0.17757	9.9318E-05	-0.41062	-0.00022966	559.303742833441	46.549	0.50497	46.549	46.345	46.85	0					21	9	3	0	0	0	0.69381	1	16328	16328		15.847	5.7733	1	15304000			20825	14810	15024	15133	20428	20428					0.03912530363299993
IEHTKKTTPW	10	Unmodified	_IEHTKKTTPW_					0	0	0			REV__ENST00000498087.5_1_9:4635336-4666491:-|nuORF	REV__ENST00000498087.5_1_9:4635336-4666491:-|nuORF	MSMS	A375_MHC_IP_R1	1	620.7467041015625	2	620.837862	1239.66117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.82	1	101.82	101.32	102.32	0								0	0	0	0.15435	1	37417	37417		6.7232	0.51738	1		+		20826	25315	15025	15134	20429	20429					0.05092774943113909
IEHWKLELRWE	11	Unmodified	_IEHWKLELRWE_					0	0	0		ATP8A2|p.C240Hfs*17|1|0.43|ENSG00000132932|chr13:25541985-25542016|TGTGAAGGGCCCAACCGCCACCTCTATGACTT/-|frameshift_variant	ATP8A2|p.C240Hfs*17|1|0.43|ENSG00000132932|chr13:25541985-25542016|TGTGAAGGGCCCAACCGCCACCTCTATGACTT/-|frameshift_variant	ATP8A2|p.C240Hfs*17|1|0.43|ENSG00000132932|chr13:25541985-25542016|TGTGAAGGGCCCAACCGCCACCTCTATGACTT/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	513.666259765625	3	513.608659	1537.80415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.086	1	51.84	51.34	52.34	0.75406								0	0	0	0.14943	1	19221	19221		20.871	14.248	1				20827	211	15026	15135	20430	20430					0.05675782334355972
IEIENFKSY	9	Unmodified	_IEIENFKSY_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-SECPEP	A375_MHC_IP_R2	2	572.1896362304688	2	571.790047	1141.56554	-0.27229	-0.00015569	-0.46199	-0.00026416	-0.73428	-0.00041985	571.7899170189415	64.735	1.4749	65.474	64.9	66.375	0.73864					64	28	4	0	0	0	0.1952	1	24530	24530		61.09	21.14	1	13194000			20828	1538	15027	15136	20431	20431					0.00042002032250820776
IEIEWYFSP	9	Unmodified	_IEIEWYFSP_					0	0	0			REV__ENSG00000173064|ENST00000682272|HECTD4	REV__ENSG00000173064|ENST00000682272|HECTD4	MSMS	A375_MHC_IP_R1	1	592.4535522460938	2	592.28714	1182.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.646	1	93.646	93.146	94.146	0								0	0	0	0.15486	1	34423	34423		11.64	3.7301	1		+		20829	21191	15028	15137	20432	20432					-0.024250964794418906
IEILNIQQR	9	Unmodified	_IEILNIQQR_					0	0	0		RXFP1|p.S356L|1|0.14|ENSG00000171509|chr4:158639283-158639283|C/T|missense_variant	RXFP1|p.S356L|1|0.14|ENSG00000171509|chr4:158639283-158639283|C/T|missense_variant	RXFP1|p.S356L|1|0.14|ENSG00000171509|chr4:158639283-158639283|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	563.665283203125	2	563.83258	1125.65061	-0.69143	-0.00038985	1.0133	0.00057136	0.32191	0.0001815	564.333255238774	66.142	0.40774	66.881	66.577	66.985	0.73812					11	7	2	0	0	0	0.656	1	25073	25073		26.268	9.1552	1	1159800			20830	29102	15029	15138	20433	20433					0.09280792288700468
IEITGAGGKKY	11	Unmodified	_IEITGAGGKKY_					0	0	0		nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1	nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1	nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	379.9486389160156	3	379.548518	1135.62372	0.017437	6.6184E-06	0.14122	5.36E-05	0.15866	6.0219E-05	379.5485729372361	26.227	0.45658	26.227	26.017	26.474	0					20	8	3	0	0	0	0.9348	1	7807	7807		19.144	19.144	1	4779100			20831	2283	15030	15139	20434	20434					0.06133683677535373
IEITGAGGKKY	11	Unmodified	_IEITGAGGKKY_					0	0	0		nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1	nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1	nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1	MULTI-SECPEP	A375_MHC_IP_R2	2	569.1943969726562	2	568.819138	1135.62372	-0.79402	-0.00045165	-2.2398	-0.0012741	-3.0339	-0.0017257	568.8184988452989	25.505	0.35418	26.149	25.976	26.33	0.64368					9	6	2	0	0	0	0.98276	1	8586	8586		30.703	14.554	1	1363300			20832	2283	15030	15139	20435	20435					0.06133683677535373
IEITSEGNKK	10	Unmodified	_IEITSEGNKK_					0	0	0		ENST00000586934.5_1_19:5623180-5651054:+|nuORF;nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;ENSG00000160633|ENST00000588852|SAFB	ENST00000586934.5_1_19:5623180-5651054:+|nuORF	ENST00000586934.5_1_19:5623180-5651054:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	559.7030029296875	2	559.806228	1117.5979	-0.96391	-0.0005396	-0.89197	-0.00049933	-1.8559	-0.0010389	559.8050200614446	71.555	0.35308	72.289	72.061	72.414	0.73421					11	6	2	0	0	0	0.70012	1	27134	27134		12.241	0.74595	1	2245600			20833	13737	15031	15140	20436	20436					0.04380789435231236
IEIVKSDLL	9	Unmodified	_IEIVKSDLL_					0	0	0			REV__nc|ENSG00000164741|Q96QB1-4|DLC1	REV__nc|ENSG00000164741|Q96QB1-4|DLC1	MULTI-SECPEP	A375_MHC_IP_R2	2	515.6940307617188	2	515.313158	1028.61176	-0.72917	-0.00037575	-1.8047	-0.00093	-2.5339	-0.0013058	515.8134533891943	78.288	0.25433	79.031	78.929	79.183	0.74293					6	4	2	0	0	0	0.49205	1	29759	29759		27.629	2.2295	1	703510	+		20834	15996	15032	15141	20437	20437					0.098600669343341
IEKAPFERHL	10	Unmodified	_IEKAPFERHL_					0	0	0			REV__ENSG00000104213|ENST00000251630|PDGFRL	REV__ENSG00000104213|ENST00000251630|PDGFRL	MULTI-SECPEP	A375_MHC_IP_R1	1	414.2995300292969	3	413.899662	1238.67716	0.65855	0.00027257	-0.38493	-0.00015932	0.27362	0.00011325	413.89941868432265	45.359	1.0625	45.359	44.523	45.585	0					24	20	2	0	0	0	0.93733	1	15891	15891		5.4027	0	1	3907400	+		20835	17307	15033	15142	20438	20438					0.06736481180041665
IEKEEPNHGR	10	Unmodified	_IEKEEPNHGR_					0	0	0			REV__nc|ENSG00000118200|Q08AD1|CAMSAP2	REV__nc|ENSG00000118200|Q08AD1|CAMSAP2	MULTI-MSMS	A375_MHC_IP_R2	2	403.6045227050781	3	403.538793	1207.59455	-0.39296	-0.00015858	0.28579	0.00011533	-0.10718	-4.325E-05	403.53894487005545	59.224	0.5066	59.971	59.742	60.249	0.74714					13	9	2	0	0	0	0.69833	1	22437	22437		7.9454	2.4221	1	2212300	+		20836	27192	15034	15143	20439	20439					-0.0009446061878861656
IEKEIQQKW	9	Unmodified	_IEKEIQQKW_					0	0	0		ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	400.6302490234375	3	401.224034	1200.65027	-0.58329	-0.00023403	0.18948	7.6023E-05	-0.39381	-0.00015801	401.22414434328255	28.576	0.2005	29.275	29.183	29.384	0.69872					5	3	2	0	0	0	0.10535	1	9898	9898		67.081	41.06	1	8627200			20837	4525	15035	15144	20440	20440					0.057973725688498234
IEKEKLGDR	9	Unmodified	_IEKEKLGDR_					0	0	0			REV__tr|U7SHA6|U7SHA6_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02242PE=4SV=1	REV__tr|U7SHA6|U7SHA6_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02242PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	544.7097778320312	2	544.308938	1086.60332	-0.36833	-0.00020048	-0.31583	-0.00017191	-0.68416	-0.0003724	544.3086784305054	127.92	1.4196	127.92	127.52	128.94	0					54	27	2	0	0	0	0.70307	1	49023	49023		6.7232	0	1	59783000	+		20838	28203	15036	15145	20441	20441					0.06348513017701407
IEKELKVLVP	10	Unmodified	_IEKELKVLVP_					0	0	0			REV__ENSG00000139354|ENST00000547754|GAS2L3	REV__ENSG00000139354|ENST00000547754|GAS2L3	MSMS	A375_MHC_IP_R1	1	584.4114379882812	2	584.371007	1166.72746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.5	1	135.5	135	136	0								0	0	0	0.15465	1	52230	52230		5.7319	0.43497	1		+		20839	19153	15037	15146	20442	20442					0.15076590785179178
IEKERLEEL	9	Unmodified	_IEKERLEEL_					0	0	0			REV__ENST00000404404.5_1_7:5028787-5036351:+|nuORF	REV__ENST00000404404.5_1_7:5028787-5036351:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	387.4454040527344	3	386.883677	1157.6292	-0.051372	-1.9875E-05	0.32087	0.00012414	0.2695	0.00010426	386.8837687359455	38.086	0.61148	38.086	37.812	38.423	0					23	11	4	0	0	0	0.67471	1	12830	12830		3.3196	0	1	7481100	+		20840	24425	15038	15147	20443	20443					0.056693624693252787
IEKEVTCPIC	10	Unmodified	_IEKEVTCPIC_					0	0	0		ENST00000460454.1_1_11:5717462-5717939:+|nuORF;nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENSG00000132274|ENST00000379965|TRIM22	ENST00000460454.1_1_11:5717462-5717939:+|nuORF	ENST00000460454.1_1_11:5717462-5717939:+|nuORF	MSMS	A375_MHC_IP_R1	1	567.6792602539062	2	567.78031	1133.54607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.477	1	72.477	71.977	72.977	0								0	0	0	0.14919	1	26368	26368		19.362	2.249	1				20841	4385	15039	15148	20444	20444					-0.015364135745130625
IEKHAVFT	8	Unmodified	_IEKHAVFT_					0	0	0			REV__ENSG00000158545|ENST00000301011|ZC3H18	REV__ENSG00000158545|ENST00000301011|ZC3H18	MULTI-MSMS	A375_MHC_IP_R2	2	473.1631774902344	2	472.763635	943.512717	-0.51049	-0.00024134	-0.43923	-0.00020765	-0.94971	-0.00044899	472.76334469016706	132.85	0.20358	133.02	132.94	133.15	0.16487					5	3	2	0	0	0	0.7773	1	52291	52291		4.756	0	1	2905100	+		20842	20083	15040	15149	20445	20445					0.03870088760083945
IEKHAVFT	8	Unmodified	_IEKHAVFT_					0	0	0			REV__ENSG00000158545|ENST00000301011|ZC3H18	REV__ENSG00000158545|ENST00000301011|ZC3H18	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	472.763635	943.512717	-0.51049	-0.00024134	-0.43923	-0.00020765	-0.94971	-0.00044899	472.76334469016706	132.85	0.20358	133.02	132.94	133.15	0.16487	-0.027817	-0.00028755	NaN	4.756	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2905100	+		20843	20083	15040	15149							0.03870088760083945
IEKIEWDTW	9	Unmodified	_IEKIEWDTW_					0	0	0		nc|ENSG00000214595|Q6ZMW3-2|EML6;ENSG00000214595|ENST00000356458|EML6	nc|ENSG00000214595|Q6ZMW3-2|EML6	nc|ENSG00000214595|Q6ZMW3-2|EML6	MSMS	A375_MHC_IP_R2	2	407.146728515625	3	407.20464	1218.59209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.969	1	70.704	70.204	71.204	0.73421								0	0	0	0.15486	1	26523	26523		2.7352	0.23671	1				20844	9620	15041	15150	20446	20446					-0.008463090764280423
IEKIRQKV	8	Unmodified	_IEKIRQKV_					0	0	0		ENSG00000011454|ENST00000373647|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	MULTI-MSMS	A375_MHC_IP_R1	1	507.2236328125	2	507.326934	1012.63931	-0.40303	-0.00020447	3.2103	0.0016287	2.8073	0.0014242	507.83116978928007	73.751	0.60844	73.751	73.437	74.045	0					36	11	4	0	0	0	0.76654	1	26810	26810		15.847	1.0089	1	11577000			20845	1003	15042	15151	20447	20447					0.13350014985235248
IEKIYKRW	8	Unmodified	_IEKIYKRW_					0	0	0			REV__tr|U7SFU1|U7SFU1_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02233PE=3SV=1	REV__tr|U7SFU1|U7SFU1_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02233PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	378.62799072265625	3	379.225598	1134.65496	-0.36197	-0.00013727	-3.7288	-0.0014141	-4.0908	-0.0015513	379.5572139227192	25.338	0.1545	25.981	25.873	26.028	0.64368					4	2	2	0	0	0	0.972	1	8422	8422		4.897	2.811	1	854010	+		20846	28172	15043	15152	20448	20448					0.09302301502270893
IEKIYVTKI	9	Unmodified	_IEKIYVTKI_					0	0	0			REV__tr|U7SZP2|U7SZP2_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00818PE=4SV=1	REV__tr|U7SZP2|U7SZP2_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00818PE=4SV=1	MSMS	A375_MHC_IP_R2	2	553.824462890625	2	553.844625	1105.6747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.894	1	98.65	98.15	99.15	0.75586								0	0	0	0.15486	1	37149	37149		7.2892	0	1		+		20847	28656	15044	15153	20449	20449					0.12608632722390212
IEKKKPKFRKR	11	Unmodified	_IEKKKPKFRKR_					0	0	0		ENSG00000206559|ENST00000383768|ZCWPW2	ENSG00000206559|ENST00000383768|ZCWPW2	ENSG00000206559|ENST00000383768|ZCWPW2	MSMS	A375_MHC_IP_R2	2	729.4736938476562	2	729.474995	1456.93544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.909	1	94.654	94.154	95.154	0.74474								0	0	0	0.16358	1	35694	35694		0.30703	0	1				20848	9543	15045	15154	20450	20450					0.22524637492915645
IEKKMVFLEFR	11	Unmodified	_IEKKMVFLEFR_					0	0	0			REV__ENSG00000065427|ENST00000302445|KARS1	REV__ENSG00000065427|ENST00000302445|KARS1	MSMS	A375_MHC_IP_R1	1	720.485595703125	2	720.407598	1438.80064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.05	1	133.05	132.55	133.55	0								0	0	0	0.16279	1	51304	51304		4.1895	1.1943	1		+		20849	16498	15046	15155	20451	20451					0.09879396236124194
IEKKPIPLK	9	Unmodified	_IEKKPIPLK_					0	0	0			REV__MAGEE1|p.G770E|1|0.21|ENSG00000198934|chrX:76430239-76430239|G/A|missense_variant	REV__MAGEE1|p.G770E|1|0.21|ENSG00000198934|chrX:76430239-76430239|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	355.94140625	3	355.905865	1064.69577	-0.37182	-0.00013233	1.0481	0.00037304	0.67631	0.0002407	355.9047957734494	29.683	1.5557	29.683	29.403	30.959	0					82	30	4	0	0	0	0.56584	1	9378	9378		16.566	2.1605	1	25477000	+		20850	26978	15047	15156	20452	20452					0.16600642821890688
IEKKSKTYH	9	Unmodified	_IEKKSKTYH_					0	0	0			REV__tr|U7SJH9|U7SJH9_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02204PE=4SV=1	REV__tr|U7SJH9|U7SJH9_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02204PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	567.1741943359375	2	567.319306	1132.62406	-0.29072	-0.00016493	-0.30115	-0.00017085	-0.59187	-0.00033578	567.3192203098499	46.218	0.30315	46.983	46.855	47.159	0.76519					8	5	2	0	0	0	0.73363	1	17371	17371		10.824	0	1	2118500	+		20851	28234	15048	15157	20453	20453					0.06305103397380662
IEKKSSRIY	9	Unmodified	_IEKKSSRIY_					0	0	0			REV__ENST00000531002.1_1_11:30605754-30618795:+|nuORF	REV__ENST00000531002.1_1_11:30605754-30618795:+|nuORF	MSMS	A375_MHC_IP_R2	2	562.3717041015625	2	562.327131	1122.63971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.731	1	73.466	72.966	73.966	0.73541								0	0	0	0.15486	1	27604	27604		13.508	2.684	1		+		20852	25846	15049	15158	20454	20454					0.08329389914433705
IEKKTKKKRLI	11	Unmodified	_IEKKTKKKRLI_					0	0	0		tr|U7T5B6|U7T5B6_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00006PE=4SV=1	tr|U7T5B6|U7T5B6_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00006PE=4SV=1	tr|U7T5B6|U7T5B6_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00006PE=4SV=1	MSMS	A375_MHC_IP_R2	2	693.0343627929688	2	692.971754	1383.92895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.37	1	127.64	127.14	128.14	0.26593								0	0	0	0.16339	1	49955	49955		1.0715	0.76443	1				20853	30017	15050	15159	20455	20455					0.2523469954155644
IEKLKERSS	9	Unmodified	_IEKLKERSS_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11;TRIP11|p.L1184Ffs*17|1|0.06|ENSG00000100815|chr14:92004424-92004425|-/CCGGTCTTTTGTGTGTGCA|frameshift_variant	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MSMS	A375_MHC_IP_R1	1	545.7161865234375	2	545.316763	1088.61897	-1.1084	-0.00060444	0.25234	0.0001376	-0.85608	-0.00046684	545.3167894612769	122.88	3.0808	122.88	121.52	124.6	0					107	60	3	0	0	0	0.73804	1	45951	45951		3.5965	0.31518	1	87807000			20854	2223	15051	15160	20456	20456					0.07820799534761136
IEKLKERSS	9	Unmodified	_IEKLKERSS_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11;TRIP11|p.L1184Ffs*17|1|0.06|ENSG00000100815|chr14:92004424-92004425|-/CCGGTCTTTTGTGTGTGCA|frameshift_variant	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MSMS	A375_MHC_IP_R1	1	545.481689453125	2	545.316763	1088.61897	-0.27651	-0.00015079	0.29234	0.00015942	0.015825	8.6297E-06	545.3167331202228	125.94	3.5806	125.94	124.6	128.18	0					224	70	5	0	0	0	0.67332	2	48394	48394;48614		9.3831	3.1773	1	468140000			20855	2223	15051	15160	20457;20458	20457					0.07820799534761136
IEKLKERSS	9	Unmodified	_IEKLKERSS_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11;TRIP11|p.L1184Ffs*17|1|0.06|ENSG00000100815|chr14:92004424-92004425|-/CCGGTCTTTTGTGTGTGCA|frameshift_variant	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-SECPEP	A375_MHC_IP_R1	1	545.7164916992188	2	545.316763	1088.61897	-0.8239	-0.00044928	0.078973	4.3065E-05	-0.74492	-0.00040622	545.3168303119114	134.69	0.86105	134.69	134.12	134.98	0					22	16	2	0	0	0	0.79191	1	51991	51991		6.7232	5.0705	1	6553700			20856	2223	15051	15160	20459	20459					0.07820799534761136
IEKLKERSS	9	Unmodified	_IEKLKERSS_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11;TRIP11|p.L1184Ffs*17|1|0.06|ENSG00000100815|chr14:92004424-92004425|-/CCGGTCTTTTGTGTGTGCA|frameshift_variant	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MSMS	A375_MHC_IP_R2	2	545.7158813476562	2	545.316763	1088.61897	-0.80209	-0.0004374	0.07871	4.2922E-05	-0.72338	-0.00039447	545.3166609458929	122.78	3.5444	123.15	121.75	125.3	0.3766					134	69	4	0	0	0	0.73804	3	47063	47063;47317;47689		3.5965	0.31518	1	72117000			20857	2223	15051	15160	20460;20461;20462	20460					0.07820799534761136
IEKLLRQV	8	Unmodified	_IEKLLRQV_					0	0	0		nc|ENSG00000151413|Q8TB37-2|NUBPL;ENSG00000151413|ENST00000281081|NUBPL	nc|ENSG00000151413|Q8TB37-2|NUBPL	nc|ENSG00000151413|Q8TB37-2|NUBPL	MULTI-SECPEP	A375_MHC_IP_R1	1	500.2213439941406	2	499.821484	997.628415	-0.37778	-0.00018882	0.093447	4.6707E-05	-0.28434	-0.00014212	499.8214854362535	60.286	0.55999	60.286	60.006	60.566	0					24	10	3	0	0	0	0.8211	1	21679	21679		16.942	0	1	10030000			20858	5903	15052	15161	20463	20463					0.1295061261095043
IEKLLSNRS	9	Unmodified	_IEKLLSNRS_					0	0	0		nc|ENSG00000153956|P54289-4|CACNA2D1;nc|ENSG00000153956|P54289-5|CACNA2D1;nc|ENSG00000153956|P54289-3|CACNA2D1;ENSG00000153956|ENST00000356860|CACNA2D1;nc|ENSG00000153956|P54289|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	MULTI-MSMS	A375_MHC_IP_R2	2	530.7106323242188	2	530.31148	1058.60841	-0.65292	-0.00034625	0.043599	2.3121E-05	-0.60932	-0.00032313	530.3114415121776	129.25	0.60428	129.49	129.36	129.97	0.23946					24	11	3	0	0	0	0.67787	1	50812	50812		13.042	0	1	9490800			20859	6051	15053	15162	20464	20464					0.08144816880326289
IEKLLSNRS	9	Unmodified	_IEKLLSNRS_					0	0	0		nc|ENSG00000153956|P54289-4|CACNA2D1;nc|ENSG00000153956|P54289-5|CACNA2D1;nc|ENSG00000153956|P54289-3|CACNA2D1;ENSG00000153956|ENST00000356860|CACNA2D1;nc|ENSG00000153956|P54289|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	530.31148	1058.60841	-0.65292	-0.00034625	0.043599	2.3121E-05	-0.60932	-0.00032313	530.3114415121776	129.25	0.60428	129.49	129.36	129.97	0.23946	0.0082492	-0.00016533	NaN	13.042	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9490800			20860	6051	15053	15162							0.08144816880326289
IEKLMVRRW	9	Unmodified	_IEKLMVRRW_					0	0	0			REV__ENSG00000142511|ENST00000270590|GPR32	REV__ENSG00000142511|ENST00000270590|GPR32	MSMS	A375_MHC_IP_R1	1	615.7589721679688	2	615.860618	1229.70668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.509	1	95.509	95.009	96.009	0								0	0	0	0.15486	1	35105	35105		4.3292	0.38484	1		+		20861	19310	15054	15163	20465	20465					0.10101721924525009
IEKLSETVVL	10	Unmodified	_IEKLSETVVL_					0	0	0		ENSG00000155085|ENST00000424296|AK9;nc|ENSG00000155085|Q5TCS8-3|AK9;nc|ENSG00000155085|Q5TCS8-6|AK9;ENST00000466992.1_1_6:109871214-109940313:-|nuORF	ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	MULTI-SECPEP	A375_MHC_IP_R2	2	565.1697387695312	2	565.836997	1129.65944	-0.44454	-0.00025154	1.0296	0.00058256	0.58501	0.00033102	565.8374000629634	77.563	0.40712	78.306	77.958	78.365	0.74293					12	7	2	0	0	0	0.92227	1	29471	29471		8.7454	8.2206	1	1193500			20862	6123	15055	15164	20466	20466					0.09979721134527608
IEKLTHDYI	9	Unmodified	_IEKLTHDYI_					0	0	0		ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	MSMS	A375_MHC_IP_R1	1	377.8805236816406	3	377.873001	1130.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.94	1	33.94	33.44	34.44	0								0	0	0	0.15486	1	11132	11132		10.151	2.2052	1				20863	1978	15056	15165	20467	20467					0.03709994786186144
IEKLWGQRRRS	11	Unmodified	_IEKLWGQRRRS_					0	0	0			REV__ENST00000472719.5_1_2:27008929-27016144:+|nuORF	REV__ENST00000472719.5_1_2:27008929-27016144:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	477.3428955078125	3	476.944265	1427.81096	-0.77424	-0.00036927	-1.0105	-0.00048195	-1.7847	-0.00085122	476.9435765922585	133.89	1.1159	133.89	133.41	134.52	0					31	21	3	0	0	0	0.73828	1	51663	51663		1.0136	1.0136	1	3047600	+		20864	17859	15057	15166	20468	20468					0.11417140005596593
IEKLWLKKHRR	11	Unmodified	_IEKLWLKKHRR_					0	0	0		ZBBX|p.M318I|1|0.46|ENSG00000169064|chr3:167322146-167322146|C/T|missense_variant	ZBBX|p.M318I|1|0.46|ENSG00000169064|chr3:167322146-167322146|C/T|missense_variant	ZBBX|p.M318I|1|0.46|ENSG00000169064|chr3:167322146-167322146|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	754.1038208007812	2	753.972619	1505.93069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.59	1	128.83	128.33	129.33	0.23946								0	0	0	0.16334	1	50503	50503		1.3295	1.0605	1				20865	30178	15058	15167	20469	20469					0.19795753350149425
IEKNILIRD	9	Unmodified	_IEKNILIRD_					0	0	0		tr|U7SU52|U7SU52_FUSNUThreonine-phosphatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01024PE=4SV=1	tr|U7SU52|U7SU52_FUSNUThreonine-phosphatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01024PE=4SV=1	tr|U7SU52|U7SU52_FUSNUThreonine-phosphatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01024PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	372.2926025390625	3	371.892396	1112.65536	0.3082	0.00011462	0.31691	0.00011786	0.62511	0.00023248	371.892496154867	53.424	0.35614	53.424	53.199	53.555	0					14	6	3	0	0	0	0.77901	1	19060	19060		6.1918	0	1	3944600			20866	29738	15059	15168	20470	20470					0.10353676431486747
IEKNRLPN	8	Unmodified	_IEKNRLPN_					0	0	0			REV__ENSG00000140749|ENST00000268389|IGSF6	REV__ENSG00000140749|ENST00000268389|IGSF6	MULTI-SECPEP	A375_MHC_IP_R1	1	493.03460693359375	2	492.285266	982.555979	-0.58523	-0.0002881	0.052228	2.5711E-05	-0.533	-0.00026239	492.2852162044623	133.43	1.0209	133.43	132.59	133.61	0					29	19	2	0	0	0	0.972	1	51457	51457		10.074	6.4774	1	2448300	+		20867	19229	15060	15169	20471	20471					0.06400278537364557
IEKQKLKKK	9	Unmodified	_IEKQKLKKK_					0	0	0		C5|p.S1420Hfs*6|1|0.02|ENSG00000106804|chr9:120963702-120963703|-/TGTGT|frameshift_variant;C5|p.S1420Ffs*23|1|0.07|ENSG00000106804|chr9:120963700-120963701|-/TGTTTAATGCTGGCTGAAA|frameshift_variant;ENSG00000106804|ENST00000223642|C5	C5|p.S1420Hfs*6|1|0.02|ENSG00000106804|chr9:120963702-120963703|-/TGTGT|frameshift_variant	C5|p.S1420Hfs*6|1|0.02|ENSG00000106804|chr9:120963702-120963703|-/TGTGT|frameshift_variant	MSMS	A375_MHC_IP_R1	1	572.0096435546875	2	571.884616	1141.75468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.77	1	105.77	105.27	106.27	0								0	0	0	0.15486	1	38827	38827		3.9444	0	1				20868	270	15061	15170	20472	20472					0.1894711911622835
IEKQSLYKEL	10	Unmodified	_IEKQSLYKEL_					0	0	0			REV__ENSG00000156689|ENST00000287275|GLYATL2	REV__ENSG00000156689|ENST00000287275|GLYATL2	MULTI-MSMS	A375_MHC_IP_R1	1	417.97161865234375	3	417.571211	1249.6918	0.45424	0.00018968	0.69493	0.00029018	1.1492	0.00047986	417.57144100812843	69.056	0.50669	69.056	68.769	69.275	0					15	9	2	0	0	0	0.66857	1	25033	25033		15.739	1.5205	1	2679100	+		20869	19993	15062	15171	20473	20473					0.0769450853752005
IEKQSLYKEL	10	Unmodified	_IEKQSLYKEL_					0	0	0			REV__ENSG00000156689|ENST00000287275|GLYATL2	REV__ENSG00000156689|ENST00000287275|GLYATL2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	417.571211	1249.6918	0.45424	0.00018968	0.69493	0.00029018	1.1492	0.00047986	417.57144100812843	69.056	0.50669	69.056	68.769	69.275	0	0	0	NaN	15.739	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2679100	+		20870	19993	15062	15171							0.0769450853752005
IEKRKLRKKRR	11	Unmodified	_IEKRKLRKKRR_					0	0	0		PAWR|p.E158K|1|0.38|ENSG00000177425|chr12:79689773-79689773|C/T|missense_variant	PAWR|p.E158K|1|0.38|ENSG00000177425|chr12:79689773-79689773|C/T|missense_variant	PAWR|p.E158K|1|0.38|ENSG00000177425|chr12:79689773-79689773|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	755.8858642578125	2	756.010067	1510.00558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.95	1	112.68	112.18	113.18	0.72458								0	0	0	0.16353	1	42207	42207		0.35063	0.35063	1				20871	15113	15063	15172	20474	20474					0.27097935881374724
IEKRKYFK	8	Unmodified	_IEKRKYFK_					0	0	0			REV__ENSG00000156502|ENST00000359655|SUPV3L1	REV__ENSG00000156502|ENST00000359655|SUPV3L1	MSMS	A375_MHC_IP_R2	2	371.2695617675781	3	371.225598	1110.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.091	1	72.826	72.326	73.326	0.73421								0	0	0	0.16876	1	27356	27356		1.4819	0.28856	1		+		20872	19984	15064	15173	20475	20475					0.10406301502280257
IEKRMLIRY	9	Unmodified	_IEKRMLIRY_					0	0	0			REV__ENST00000360586.7_1_14:55467270-55467309:-|nuORF	REV__ENST00000360586.7_1_14:55467270-55467309:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	407.3116455078125	3	407.909392	1220.70635	0.06536	2.6661E-05	3.9295	0.0016029	3.9949	0.0016296	407.9115010589955	44.344	0.25574	44.344	44.165	44.42	0					5	4	2	0	0	0	0.71541	1	15431	15431		4.5289	0	1	488800	+		20873	23896	15065	15174	20476	20476					0.10482302204673033
IEKRNDRKA	9	Unmodified	_IEKRNDRKA_					0	0	0			REV__ENST00000261778.1_1_16:69118402-69118879:+|nuORF	REV__ENST00000261778.1_1_16:69118402-69118879:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	565.1563720703125	2	565.325454	1128.63635	-0.34783	-0.00019664	3.8653	0.0021851	3.5174	0.0019885	565.3273018951891	57.169	0.35768	57.169	56.956	57.313	0					11	6	2	0	0	0	0.75842	1	20536	20536		5.2969	1.3525	1	1276800	+		20874	23194	15066	15175	20477	20477					0.0771813986041252
IEKRNDRKA	9	Unmodified	_IEKRNDRKA_					0	0	0			REV__ENST00000261778.1_1_16:69118402-69118879:+|nuORF	REV__ENST00000261778.1_1_16:69118402-69118879:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	565.325454	1128.63635	-0.69384	-0.00039225	3.9321	0.0022229	3.2383	0.0018307	565.3274258214793	56.154	0.40926	56.904	56.642	57.051	0.75015	-0.13214	8.0974E-06	NaN	5.2969	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1151200	+		20875	23194	15066	15175							0.0771813986041252
IEKRSTTTIV	10	Unmodified	_IEKRSTTTIV_					0	0	0			REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	A375_MHC_IP_R1	1	574.7374877929688	2	574.337695	1146.66084	-0.54257	-0.00031162	0.70325	0.0004039	0.16068	9.2283E-05	574.3378629239213	138.64	0.40509	138.64	138.36	138.76	0					12	7	2	0	0	0	0.70651	1	53332	53332		9.3831	2.66	1	1710500	+		20876	17177	15067	15176	20478	20478					0.09337355223260602
IEKRSTTTIV	10	Unmodified	_IEKRSTTTIV_					0	0	0			REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	574.737548828125	2	574.337695	1146.66084	-0.44876	-0.00025774	-0.29773	-0.000171	-0.74649	-0.00042874	574.3376436251386	131.53	0.40469	131.53	131.38	131.78	0					13	7	2	0	0	0	0.94598	1	50732	50732		3.2813	3.2813	1	3592600	+		20877	17177	15067	15176	20479	20479					0.09337355223260602
IEKRSTTTIV	10	Unmodified	_IEKRSTTTIV_					0	0	0			REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	A375_MHC_IP_R2	2	574.3960571289062	2	574.337695	1146.66084	-0.20303	-0.00011661	-0.038845	-2.231E-05	-0.24188	-0.00013892	574.3376498813509	131.37	0.56129	131.56	131.39	131.95	0.18954					15	10	2	0	0	0	0.71564	1	51747	51747		5.2969	0.39987	1	4874900	+		20878	17177	15067	15176	20480	20480					0.09337355223260602
IEKRSTTTIV	10	Unmodified	_IEKRSTTTIV_					0	0	0			REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	574.337695	1146.66084	-0.54257	-0.00031162	0.70325	0.0004039	0.16068	9.2283E-05	574.3378629239213	138.64	0.40509	138.64	138.36	138.76	0	-0.034034	0.00027028	NaN	9.3831	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1710500	+		20879	17177	15067	15176							0.09337355223260602
IEKRSTTTIV	10	Unmodified	_IEKRSTTTIV_					0	0	0			REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	574.337695	1146.66084	-0.027664	-1.5889E-05	-0.18354	-0.00010541	-0.2112	-0.0001213	574.3373990343682	138.62	0.45648	138.7	138.37	138.82	0.083969	0.034034	-0.00074835	NaN	9.3831	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1445700	+		20880	17177	15067	15176							0.09337355223260602
IEKSAKEDGD	10	Unmodified	_IEKSAKEDGD_					0	0	0			REV__tr|U7SMH7|U7SMH7_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01873PE=4SV=1	REV__tr|U7SMH7|U7SMH7_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01873PE=4SV=1	MSMS	A375_MHC_IP_R1	1	546.2074584960938	2	546.264393	1090.51423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.39	1	62.39	61.89	62.89	0								0	0	0	0.15372	1	22533	22533		8.7454	0	1		+		20881	28303	15068	15177	20481	20481					-0.027403667324506387
IEKSLKRYL	9	Unmodified	_IEKSLKRYL_					0	0	0		tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	384.2864990234375	3	383.904524	1148.69174	-0.11989	-4.6027E-05	0.46277	0.00017766	0.34288	0.00013163	383.90466345972305	32.136	0.60735	32.872	32.555	33.162	0.73691					14	9	2	0	0	0	0.67787	1	11425	11425		8.9762	1.0308	1	8474600			20882	29814	15069	15178	20482	20482					0.12334553328196307
IEKSRRYT	8	Unmodified	_IEKSRRYT_					0	0	0			REV__ENST00000581230.5_1_17:62498125-62502378:-|nuORF	REV__ENST00000581230.5_1_17:62498125-62502378:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	526.6453857421875	2	526.795998	1051.57744	-0.6942	-0.0003657	-0.63679	-0.00033546	-1.331	-0.00070116	526.7956621384266	34.434	0.35796	35.186	35.006	35.364	0.75225					12	6	2	0	0	0	0.8957	1	12384	12384		21.747	4.8044	1	4097600	+		20883	26348	15070	15179	20483	20483					0.05371663566097595
IEKVIDKYI	9	Unmodified	_IEKVIDKYI_					0	0	0		tr|U7SIZ5|U7SIZ5_FUSNUPeptidaseM20dimerisationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02040PE=4SV=1	tr|U7SIZ5|U7SIZ5_FUSNUPeptidaseM20dimerisationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02040PE=4SV=1	tr|U7SIZ5|U7SIZ5_FUSNUPeptidaseM20dimerisationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02040PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	374.6250915527344	3	374.225264	1119.65396	0.28392	0.00010625	-0.33894	-0.00012684	-0.05502	-2.059E-05	374.22501267684214	52.464	0.3559	52.464	52.287	52.643	0					10	6	2	0	0	0	0.70759	1	18694	18694		15.739	4.8397	1	2241700			20884	29437	15071	15180	20484	20484					0.09892042342721652
IEKYNKAKI	9	Unmodified	_IEKYNKAKI_					0	0	0			REV__tr|U7SKK3|U7SKK3_FUSNUDUF4253domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02059PE=4SV=1	REV__tr|U7SKK3|U7SKK3_FUSNUDUF4253domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02059PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	554.2327270507812	2	553.832049	1105.64954	-0.49492	-0.0002741	1.1824	0.00065483	0.68744	0.00038073	553.8326575874634	70.774	0.40761	70.774	70.494	70.902	0					12	7	2	0	0	0	0.65527	1	25730	25730		17.113	2.2746	1	2466500	+		20885	28256	15072	15181	20485	20485					0.10094577919812764
IELGFTFCSY	10	Unmodified	_IELGFTFCSY_					0	0	0			REV__ENST00000010404.6_1_12:16517081-16517159:+|nuORF	REV__ENST00000010404.6_1_12:16517081-16517159:+|nuORF	MSMS	A375_MHC_IP_R2	2	590.2197875976562	2	590.273175	1178.5318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.571	1	95.316	94.816	95.816	0.74474								0	0	0	0.15308	1	35937	35937		10.824	0.75	1		+		20886	23005	15073	15182	20486	20486					-0.05032742731145845
IELHEDLTY	9	Unmodified	_IELHEDLTY_					0	0	0			REV__ENSG00000182752|ENST00000328252|PAPPA	REV__ENSG00000182752|ENST00000328252|PAPPA	MSMS	A375_MHC_IP_R2	2	566.7218017578125	2	566.779679	1131.5448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.36	1	129.6	129.1	130.1	0.23946								0	0	0	0.14934	1	50840	50840		30.637	13.524	1		+		20887	21706	15074	15183	20487	20487					-0.015705883474311122
IELIMITGVV	10	Unmodified	_IELIMITGVV_					0	0	0			REV__ENST00000435711.5_2_2:178081475-178083842:+|nuORF	REV__ENST00000435711.5_2_2:178081475-178083842:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	363.2970275878906	3	363.219233	1086.63587	-0.19929	-7.2386E-05	3.9858	0.0014477	3.7865	0.0013753	363.55368458085036	66.524	0.61338	67.26	66.882	67.495	0.73631					19	11	3	0	0	0	0.72086	1	25212	25212		20.581	5.3325	1	1408200	+		20888	24752	15075	15184	20488	20488					0.09601584096344595
IELKRKQRRRK	11	Unmodified	_IELKRKQRRRK_					0	0	0			REV__ENST00000581758.1_1_18:9182415-9208777:+|nuORF	REV__ENST00000581758.1_1_18:9182415-9208777:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	755.7305297851562	2	755.991875	1509.9692	-0.86262	-0.00065213	2.9497	0.00223	2.0871	0.0015779	756.4953053778373	124.58	0.4529	124.91	124.6	125.05	0.32968					9	8	2	0	0	0	1.0014	1	48125	48125		0	0	1	22641000	+		20889	26352	15076	15185	20489	20489					0.2346105898463975
IELKRQELS	9	Unmodified	_IELKRQELS_					0	0	0		ENSG00000167117|ENST00000450727|ANKRD40CL	ENSG00000167117|ENST00000450727|ANKRD40CL	ENSG00000167117|ENST00000450727|ANKRD40CL	MULTI-SECPEP	A375_MHC_IP_R1	1	372.9522705078125	3	372.552151	1114.63462	0.17807	6.6339E-05	0.0082539	3.075E-06	0.18632	6.9414E-05	372.5520652783978	33	0.40473	33	32.785	33.19	0					18	7	3	0	0	0	0.59614	1	10708	10708		17.443	0	1	11077000			20890	7158	15077	15186	20490	20490					0.081890860518115
IELLERYR	8	Unmodified	_IELLERYR_					0	0	0			REV__nc|ENSG00000067840|Q76G19-2|PDZD4	REV__nc|ENSG00000067840|Q76G19-2|PDZD4	MULTI-SECPEP	A375_MHC_IP_R1	1	364.29718017578125	3	364.545108	1090.61349	0.093365	3.4036E-05	0.24089	8.7816E-05	0.33426	0.00012185	364.54517064782164	52.773	1.065	52.773	52.287	53.352	0					25	20	2	0	0	0	0.972	1	18950	18950		3.5965	1.098	1	1442300	+		20891	16535	15078	15187	20491	20491					0.07181120742939129
IELREERFYWL	11	Unmodified	_IELREERFYWL_					0	0	0			REV__nc|ENSG00000168014|Q4AC94-4|C2CD3	REV__nc|ENSG00000168014|Q4AC94-4|C2CD3	MSMS	A375_MHC_IP_R2	2	777.532958984375	2	777.409183	1552.80381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.68	1	126.95	126.45	127.45	0.26593								0	0	0	0.16273	1	49589	49589		4.5289	1.7937	1		+		20892	27343	15079	15188	20492	20492					0.049523626145173694
IELRRLAAP	9	Unmodified	_IELRRLAAP_					0	0	0		ENST00000471009.1_1_13:21721026-21721380:+|nuORF	ENST00000471009.1_1_13:21721026-21721380:+|nuORF	ENST00000471009.1_1_13:21721026-21721380:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	520.223876953125	2	519.824558	1037.63456	-0.69161	-0.00035952	-0.23976	-0.00012463	-0.93137	-0.00048415	519.8244955700917	64.922	0.45642	65.66	65.461	65.918	0.73812					14	8	2	0	0	0	0.74651	1	24633	24633		0.52476	0	1	1620000			20893	12348	15080	15189	20493	20493					0.11725130842455656
IELTTFKKL	9	Unmodified	_IELTTFKKL_					0	0	0			REV__ENSG00000257335|ENST00000475668|MGAM	REV__ENSG00000257335|ENST00000475668|MGAM	MULTI-SECPEP	A375_MHC_IP_R2	2	364.6102294921875	3	364.893625	1091.65905	-0.58894	-0.0002149	2.4262	0.00088529	1.8372	0.00067039	364.89436683852153	53.286	0.25452	54.037	53.893	54.147	0.75105					6	4	2	0	0	0	0.62767	1	20134	20134		11.495	0	1	548490	+		20894	22890	15081	15190	20494	20494					0.11688346205323796
IELTYIFKI	9	Unmodified	_IELTYIFKI_					0	0	0			REV__tr|U7SV17|U7SV17_FUSNUFAD-dependentproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01092PE=4SV=1	REV__tr|U7SV17|U7SV17_FUSNUFAD-dependentproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01092PE=4SV=1	MSMS	A375_MHC_IP_R2	2	380.5927429199219	3	380.561876	1138.6638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.4	1	38.171	37.671	38.671	0.7709								0	0	0	0.15486	1	13681	13681		7.609	0.50723	1		+		20895	28577	15082	15191	20495	20495					0.10001230348098034
IELYSCDSRWF	11	Unmodified	_IELYSCDSRWF_					0	0	0			REV__ENST00000358220.5_1_10:1130422-1142176:+|nuORF	REV__ENST00000358220.5_1_10:1130422-1142176:+|nuORF	MSMS	A375_MHC_IP_R2	2	709.7683715820312	2	709.824095	1417.63364	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.16	1	94.905	94.405	95.405	0.74474								0	0	0	0.1624	1	35787	35787		6.2058	0	1		+		20896	23853	15083	15192	20496	20496					-0.05847496379419681
IEMAEGESRE	10	Unmodified	_IEMAEGESRE_					0	0	0			REV__ENSG00000198546|ENST00000361518|ZNF511	REV__ENSG00000198546|ENST00000361518|ZNF511	MULTI-SECPEP	A375_MHC_IP_R2	2	576.1560668945312	2	575.755878	1149.4972	-0.1213	-6.984E-05	0.40943	0.00023573	0.28813	0.00016589	575.7561093780538	70.062	0.50888	70.796	70.488	70.997	0.73421					16	9	2	0	0	0	0.92227	1	26538	26538		5.2969	5.2969	1	2857200	+		20897	22379	15084	15193	20497	20497					-0.07156610609922609
IEMDEYLRV	9	Unmodified	_IEMDEYLRV_					0	0	0		PNPLA1|p.T164Dfs*101|1|0.49|ENSG00000180316|chr6:36293104-36293105|-/C|frameshift_variant;nc|ENSG00000180316|Q8N8W4|PNPLA1;ENSG00000180316|ENST00000636260|PNPLA1	PNPLA1|p.T164Dfs*101|1|0.49|ENSG00000180316|chr6:36293104-36293105|-/C|frameshift_variant	PNPLA1|p.T164Dfs*101|1|0.49|ENSG00000180316|chr6:36293104-36293105|-/C|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	390.28875732421875	3	389.861996	1166.56416	0.36929	0.00014397	3.8104	0.0014855	4.1797	0.0016295	390.19699411727305	35.856	0.25621	35.856	35.625	35.881	0					5	4	2	0	0	0	0.76827	1	11882	11882		7.1017	6.8659	1	461220			20898	8288	15085	15194	20498	20498					-0.01245955328204218
IEMEELLE	8	Unmodified	_IEMEELLE_					0	0	0			REV__ENSG00000198752|ENST00000361246|CDC42BPB	REV__ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-SECPEP	A375_MHC_IP_R1	1	503.6839904785156	2	503.244083	1004.47361	-0.50304	-0.00025315	2.1701	0.0010921	1.667	0.00083892	503.74685949701376	91.249	0.35503	91.249	91.148	91.503	0					9	6	2	0	0	0	0.95423	1	33576	33576		12.532	0	1	814630	+		20899	22410	15086	15195	20499	20499					-0.02844424376439747
IEMVTSLAY	9	Unmodified	_IEMVTSLAY_					0	0	0		nc|ENSG00000095261|Q16401-2|PSMD5;ENSG00000095261|ENST00000210313|PSMD5;ENST00000496688.1_1_9:123589031-123593637:-|nuORF	nc|ENSG00000095261|Q16401-2|PSMD5	nc|ENSG00000095261|Q16401-2|PSMD5	MULTI-SECPEP	A375_MHC_IP_R2	2	514.1480712890625	2	513.762443	1025.51033	-0.97686	-0.00050187	0.36062	0.00018527	-0.61624	-0.0003166	513.7626930536843	35.04	0.35321	35.804	35.576	35.929	0.76338					11	6	2	0	0	0	0.55359	1	12671	12671		28.487	1.6032	1	3263900			20900	2037	15087	15196	20500	20500					-0.0014012775986884662
IEMYKGSHV	9	Unmodified	_IEMYKGSHV_					0	0	0		NT5DC3|p.E190K|1|0.27|ENSG00000111696|chr12:103798634-103798634|C/T|missense_variant	NT5DC3|p.E190K|1|0.27|ENSG00000111696|chr12:103798634-103798634|C/T|missense_variant	NT5DC3|p.E190K|1|0.27|ENSG00000111696|chr12:103798634-103798634|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	355.4598693847656	3	355.179548	1062.51682	-0.42015	-0.00014923	0.078163	2.7762E-05	-0.34198	-0.00012147	355.1795164873534	35.732	2.1301	36.496	35.375	37.505	0.76338					70	41	2	0	0	0	0.72507	1	12706	12706		2.7352	1.1429	1	2191900			20901	15031	15088	15197	20501	20501					-0.011941898085069624
IENEGLNVLVL	11	Unmodified	_IENEGLNVLVL_					0	0	0		nc|ENSG00000100503|Q8N4C6-10|NIN;ENSG00000100503|ENST00000530997|NIN;nc|ENSG00000100503|Q8N4C6-4|NIN;nc|ENSG00000100503|Q8N4C6-9|NIN;nc|ENSG00000100503|Q8N4C6-2|NIN;nc|ENSG00000100503|Q8N4C6|NIN;nc|ENSG00000100503|Q8N4C6-5|NIN;NIN|p.L1723*|1|0.09|ENSG00000100503|chr14:50744262-50744262|A/-|frameshift_variant	nc|ENSG00000100503|Q8N4C6-10|NIN	nc|ENSG00000100503|Q8N4C6-10|NIN	MULTI-MSMS	A375_MHC_IP_R2	2	405.2997131347656	3	404.899328	1211.67615	-0.29418	-0.00011911	0.68723	0.00027826	0.39305	0.00015914	404.89934013208045	19.801	1.1673	20.412	19.892	21.059	0.61029					36	22	3	0	0	0	0.66409	1	6121	6121		18.34	2.0652	1	2508400			20902	2186	15089	15198	20502	20502					0.07878222020485737
IENEIYSY	8	Unmodified	_IENEIYSY_					0	0	0		tr|U7SH84|U7SH84_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02361PE=4SV=1	tr|U7SH84|U7SH84_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02361PE=4SV=1	tr|U7SH84|U7SH84_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02361PE=4SV=1	MSMS	A375_MHC_IP_R2	2	515.6770629882812	2	515.740022	1029.46549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.326	1	99.086	98.586	99.586	0.75977								0	0	0	0.16876	1	37304	37304		19.257	1.122	1				20903	29417	15090	15199	20503	20503					-0.048062353015666304
IENEQYNFVGS	11	Unmodified	_IENEQYNFVGS_					0	0	0			REV__ENSG00000138622|ENST00000261917|HCN4	REV__ENSG00000138622|ENST00000261917|HCN4	MULTI-MSMS	A375_MHC_IP_R1	1	650.6951904296875	2	650.296224	1298.5779	-0.45738	-0.00029743	-0.1831	-0.00011907	-0.64047	-0.0004165	650.2959223300337	90.006	0.45437	90.006	89.73	90.184	0					14	8	2	0	0	0	0.60848	1	33126	33126		22.658	2.2436	1	2558700	+		20904	19104	15091	15200	20504	20504					-0.05945006295405619
IENEVELLGE	10	Unmodified	_IENEVELLGE_					0	0	0		nc|ENSG00000137075|Q9H0F5-5|RNF38;nc|ENSG00000137075|Q9H0F5-3|RNF38;nc|ENSG00000137075|Q9H0F5-4|RNF38;nc|ENSG00000137075|Q9H0F5-2|RNF38;ENSG00000137075|ENST00000259605|RNF38	nc|ENSG00000137075|Q9H0F5-5|RNF38	nc|ENSG00000137075|Q9H0F5-5|RNF38	MSMS	A375_MHC_IP_R2	2	572.6856079101562	2	572.790244	1143.56593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.93	1	112.65	112.15	113.15	0.72458								0	0	0	0.15308	1	42197	42197		10.824	0.75	1				20905	4856	15092	15201	20505	20505					-0.00010623038542689756
IENFDVYAIK	10	Unmodified	_IENFDVYAIK_					0	0	0		ENST00000480881.1_1_9:115179142-115201087:+|nuORF;nc|ENSG00000119471|Q6YN16-2|HSDL2;ENSG00000119471|ENST00000398805|HSDL2	ENST00000480881.1_1_9:115179142-115201087:+|nuORF	ENST00000480881.1_1_9:115179142-115201087:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	404.6360168457031	3	404.548406	1210.62339	-0.022637	-9.1576E-06	-0.44982	-0.00018197	-0.47245	-0.00019113	404.54870544428667	44.483	0.5589	45.252	45.035	45.594	0.7691					20	10	3	0	0	0	0.92199	1	16593	16593		14.957	5.4132	1	3287300			20906	3597	15093	15202	20506	20506					0.02650263957639254
IENFEALKSW	10	Unmodified	_IENFEALKSW_					0	0	0		nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26;nc|ENSG00000139746|Q5T8P6-6|RBM26;ENST00000472143.2_1_13:79951480-79979915:-|nuORF	nc|ENSG00000139746|Q5T8P6-3|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	MSMS	A375_MHC_IP_R1	1	618.355224609375	2	618.816596	1235.61864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.511	1	87.511	87.011	88.011	0								0	0	0	0.14946	1	32110	32110		25.997	13.125	1				20907	5109	15094	15203	20507	20507					0.010253798149051363
IENIKELIK	9	Unmodified	_IENIKELIK_					0	0	0			REV__tr|U7SWN9|U7SWN9_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01116PE=4SV=1	REV__tr|U7SWN9|U7SWN9_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01116PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	367.5854187011719	3	367.228897	1098.66486	0.093681	3.4402E-05	1.111	0.00040799	1.2047	0.00044239	367.22929214307896	32.952	0.40507	32.952	32.734	33.14	0					15	7	3	0	0	0	0.49205	1	10750	10750		11.518	4.4808	1	1755000	+		20908	28605	15095	15204	20508	20508					0.1194744471699778
IENIKELIK	9	Unmodified	_IENIKELIK_					0	0	0			REV__tr|U7SWN9|U7SWN9_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01116PE=4SV=1	REV__tr|U7SWN9|U7SWN9_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01116PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		3	367.228897	1098.66486	0.13915	5.1099E-05	1.4667	0.0005386	1.6058	0.0005897	367.22937313716636	31.889	0.40437	32.626	32.35	32.755	0.73691	-0.16304	0.00011776	NaN	11.518	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1749100	+		20909	28605	15095	15204							0.1194744471699778
IENIRVLY	8	Unmodified	_IENIRVLY_					0	0	0			REV__ENSG00000135829|ENST00000367549|DHX9	REV__ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	A375_MHC_IP_R1	1	510.6978759765625	2	510.297842	1018.58113	-0.42456	-0.00021665	-0.061119	-3.1189E-05	-0.48568	-0.00024784	510.2978984438674	93.855	0.70768	93.855	93.433	94.14	0					32	13	3	0	0	0	0.86263	1	34466	34466		34.102	14.845	1	6747500	+		20910	18889	15096	15205	20509	20509					0.07258333339950696
IENKDGTYNW	10	Unmodified	_IENKDGTYNW_					0	0	0		ENSG00000101307|ENST00000381605|SIRPB1	ENSG00000101307|ENST00000381605|SIRPB1	ENSG00000101307|ENST00000381605|SIRPB1	MULTI-SECPEP	A375_MHC_IP_R1	1	620.6852416992188	2	620.28566	1238.55677	-0.62615	-0.00038839	0.49772	0.00030873	-0.12843	-7.9664E-05	620.2859082885903	41.748	0.41086	41.748	41.571	41.982	0					12	7	2	0	0	0	0.33503	1	14469	14469		80.676	42.5	1	1768500			20911	2279	15097	15206	20510	20510					-0.05296971604229839
IENKDGTYNW	10	Unmodified	_IENKDGTYNW_					0	0	0		ENSG00000101307|ENST00000381605|SIRPB1	ENSG00000101307|ENST00000381605|SIRPB1	ENSG00000101307|ENST00000381605|SIRPB1	MULTI-MATCH	A375_MHC_IP_R2	2		2	620.28566	1238.55677	-0.96452	-0.00059828	0.12173	7.551E-05	-0.84279	-0.00052277	620.285638186339	41.066	0.5581	41.84	41.489	42.047	0.77451	0.04606	-0.0002385	NaN	80.676	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1746800			20912	2279	15097	15206							-0.05296971604229839
IENKNIKQI	9	Unmodified	_IENKNIKQI_					0	0	0			REV__tr|U7SYX6|U7SYX6_FUSNUIron(III)transportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00944PE=4SV=1	REV__tr|U7SYX6|U7SYX6_FUSNUIron(III)transportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00944PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	550.7268676757812	2	550.327131	1098.63971	-0.25426	-0.00013993	-0.09249	-5.09E-05	-0.34675	-0.00019083	550.3271414598196	39.121	0.50863	39.121	38.832	39.34	0					18	9	3	0	0	0	0.36673	1	13327	13327		45.74	9.2337	1	5337900	+		20913	28636	15098	15207	20511	20511					0.09433389914420331
IENKNIKQI	9	Unmodified	_IENKNIKQI_					0	0	0			REV__tr|U7SYX6|U7SYX6_FUSNUIron(III)transportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00944PE=4SV=1	REV__tr|U7SYX6|U7SYX6_FUSNUIron(III)transportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00944PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	550.7266235351562	2	550.327131	1098.63971	-1.0734	-0.0005907	-0.080261	-4.417E-05	-1.1536	-0.00063486	550.3271905586415	38.151	0.41108	38.925	38.687	39.098	0.77451					15	7	3	0	0	0	0.41434	1	14042	14042		32.786	10.049	1	4824700	+		20914	28636	15098	15207	20512	20512					0.09433389914420331
IENNDIIYE	9	Unmodified	_IENNDIIYE_					0	0	0		tr|U7SYY2|U7SYY2_FUSNUHeat-inducibletranscriptionrepressorHrcAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hrcAPE=3SV=1	tr|U7SYY2|U7SYY2_FUSNUHeat-inducibletranscriptionrepressorHrcAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hrcAPE=3SV=1	tr|U7SYY2|U7SYY2_FUSNUHeat-inducibletranscriptionrepressorHrcAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hrcAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	562.1693115234375	2	561.769311	1121.52407	-0.53397	-0.00029997	1.4629	0.00082183	0.92897	0.00052187	562.272105726229	76.746	1.5215	76.746	76.117	77.639	0					45	29	2	0	0	0	0.14922	1	27910	27910		41.84	1.8899	1	4839800			20915	29850	15099	15208	20513	20513					-0.03183178727090308
IENNLLELY	9	Unmodified	_IENNLLELY_					0	0	0		tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	561.1980590820312	2	560.797872	1119.58119	-0.46178	-0.00025896	-0.0085249	-4.7807E-06	-0.4703	-0.00026374	560.7978305723103	59.524	0.76191	59.524	59.092	59.854	0					47	14	5	0	0	0	0.24548	1	21342	21342		52.268	8.496	1	59553000			20916	29500	15100	15209	20514	20514					0.026182885492971764
IENNLLELY	9	Unmodified	_IENNLLELY_					0	0	0		tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	561.1975708007812	2	560.797872	1119.58119	-0.9847	-0.00055222	0.062306	3.4941E-05	-0.92239	-0.00051727	560.7978644150726	58.795	1.1669	59.542	59.082	60.249	0.74714					55	22	5	0	0	0	0.14422	1	22180	22180		61.357	23.383	1	62445000			20917	29500	15100	15209	20515	20515					0.026182885492971764
IENNVAIY	8	Unmodified	_IENNVAIY_					0	0	0		tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	468.6451110839844	2	468.245275	934.475997	-0.98452	-0.000461	0.78218	0.00036625	-0.20233	-9.4742E-05	468.2456125383233	33.433	0.61017	34.186	33.789	34.399	0.75225					20	11	3	0	0	0	0.77651	1	11991	11991		42.095	7.9921	1	3345300			20918	29924	15101	15210	20516	20516					0.006137921435197313
IENPALLRW	9	Unmodified	_IENPALLRW_					0	0	0		nc|ENSG00000065518|O95168-2|NDUFB4;ENSG00000065518|ENST00000184266|NDUFB4	nc|ENSG00000065518|O95168-2|NDUFB4	nc|ENSG00000065518|O95168-2|NDUFB4	MULTI-MSMS	A375_MHC_IP_R1	1	556.7161254882812	2	556.316566	1110.61858	-0.80343	-0.00044696	-0.21082	-0.00011728	-1.0142	-0.00056424	556.3164834356612	90.717	0.86314	90.717	90.336	91.199	0					27	16	2	0	0	0	0.027556	1	33320	33320		93.166	0	1	8151400			20919	1385	15102	15211	20517	20517					0.0676942460556802
IENPALLRW	9	Unmodified	_IENPALLRW_					0	0	0		nc|ENSG00000065518|O95168-2|NDUFB4;ENSG00000065518|ENST00000184266|NDUFB4	nc|ENSG00000065518|O95168-2|NDUFB4	nc|ENSG00000065518|O95168-2|NDUFB4	MULTI-SECPEP	A375_MHC_IP_R2	2	556.7163696289062	2	556.316566	1110.61858	-0.67711	-0.00037669	0.024076	1.3394E-05	-0.65304	-0.0003633	556.3165810271157	89.968	0.81931	90.699	90.236	91.056	0.7318					34	15	3	0	0	0	0.03341	1	34206	34206		103.42	0	1	6483700			20920	1385	15102	15211	20518	20518					0.0676942460556802
IENYYEHDERE	11	Unmodified	_IENYYEHDERE_					0	0	0			REV__nc|ENSG00000185634|Q6S5L8-2|SHC4	REV__nc|ENSG00000185634|Q6S5L8-2|SHC4	MSMS	A375_MHC_IP_R1	1	499.4452209472656	3	499.547794	1495.62155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.211	1	28.211	27.711	28.711	0								0	0	0	0.16337	1	8673	8673		0.40827	0	1		+		20921	27415	15103	15212	20519	20519					-0.10643441588922542
IEPSRTQLL	9	Unmodified	_IEPSRTQLL_					0	0	0			REV__ENSG00000204569|ENST00000376511|PPP1R10	REV__ENSG00000204569|ENST00000376511|PPP1R10	MULTI-SECPEP	A375_MHC_IP_R2	2	353.2573547363281	3	352.873113	1055.59751	-0.26851	-9.4751E-05	1.3978	0.00049324	1.1293	0.00039849	353.207876540794	27.875	0.2542	28.554	28.452	28.706	0.67857					7	4	2	0	0	0	0.63327	1	9606	9606		17.443	3.0373	1	1530800	+		20922	22525	15104	15213	20520	20520					0.07193414506059526
IEPTPDGSVI	10	Unmodified	_IEPTPDGSVI_					0	0	0			REV__ENSG00000142661|ENST00000374434|MYOM3	REV__ENSG00000142661|ENST00000374434|MYOM3	MSMS	A375_MHC_IP_R1	1	514.2135009765625	2	514.268947	1026.52334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.065	1	85.065	84.565	85.565	0								0	0	0	0.15158	1	31171	31171		14.838	1.3304	1		+		20923	19318	15105	15214	20521	20521					0.011140266238726326
IEPYLAMYLL	10	Unmodified	_IEPYLAMYLL_					0	0	0			REV__ENST00000492633.5_1_1:60370173-60378128:-|nuORF	REV__ENST00000492633.5_1_1:60370173-60378128:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	613.981689453125	2	613.330493	1224.64643	-0.12655	-7.7617E-05	-0.58519	-0.00035891	-0.71174	-0.00043653	613.3301722623413	21.18	0.25299	21.18	21.048	21.301	0					6	4	2	0	0	0	0.72378	1	5484	5484		1.6526	0	1	554100	+		20924	18795	15106	15215	20522	20522					0.0430956675077141
IEQEKCSDNY	10	Unmodified	_IEQEKCSDNY_					0	0	0		ENSG00000102021|ENST00000371920|LUZP4	ENSG00000102021|ENST00000371920|LUZP4	ENSG00000102021|ENST00000371920|LUZP4	MULTI-SECPEP	A375_MHC_IP_R2	2	615.1598510742188	2	614.76116	1227.50777	-0.42011	-0.00025826	-1.1003	-0.00067639	-1.5204	-0.00093466	614.7597336127079	93.879	0.50677	94.624	94.412	94.919	0.74474					12	9	2	0	0	0	0.93799	1	35762	35762		6.7232	0.51738	1	2799100			20925	2349	15107	15216	20523	20523					-0.09688627955483753
IEQFVIKQN	9	Unmodified	_IEQFVIKQN_					0	0	0			REV__ENSG00000144452|ENST00000272895|ABCA12	REV__ENSG00000144452|ENST00000272895|ABCA12	MSMS	A375_MHC_IP_R1	1	373.4803466796875	3	373.544996	1117.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.237	1	32.237	31.737	32.737	0								0	0	0	0.15486	1	10398	10398		7.609	0	1		+		20926	19424	15108	15217	20524	20524					0.05905701023107213
IEQIDSSMY	9	Unmodified	_IEQIDSSMY_					0	0	0		ENST00000570088.1_1_16:85936621-85936909:+|nuORF;ENSG00000140968|ENST00000268638|IRF8	ENST00000570088.1_1_16:85936621-85936909:+|nuORF	ENST00000570088.1_1_16:85936621-85936909:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	543.234375	2	543.244615	1084.47468	-0.51658	-0.00028063	-0.7817	-0.00042466	-1.2983	-0.00070528	543.2447416729799	97.796	0.50949	97.796	97.49	97.999	0					14	9	2	0	0	0	0.4867	2	35886	35886;35923		20.454	7.9221	1	1835500			20927	5199	15109	15218	20525;20526	20525					-0.06418210007541347
IEQIERTY	8	Unmodified	_IEQIERTY_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-SECPEP	A375_MHC_IP_R1	1	525.6845703125	2	526.274564	1050.53457	-0.37377	-0.00019671	0.16603	8.7377E-05	-0.20774	-0.00010933	526.274653281884	56.614	0.60911	56.614	56.347	56.956	0					21	11	3	0	0	0	0.93661	1	20290	20290		15.847	2.3393	1	3186400	+		20928	21972	15110	15219	20527	20527					0.011328487180207958
IEQKKKRELLP	11	Unmodified	_IEQKKKRELLP_					0	0	0		SFI1|p.E434K|1|0.32|ENSG00000198089|chr22:31583926-31583926|G/A|missense_variant	SFI1|p.E434K|1|0.32|ENSG00000198089|chr22:31583926-31583926|G/A|missense_variant	SFI1|p.E434K|1|0.32|ENSG00000198089|chr22:31583926-31583926|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	691.788330078125	2	691.429919	1380.84528	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.564	1	91.564	91.064	92.064	0								0	0	0	0.16352	1	33642	33642		1.1933	0	1				20929	29145	15111	15220	20528	20528					0.170095433738652
IEQPGRME	8	Unmodified	_IEQPGRME_					0	0	0			REV__ENSG00000136709|ENST00000322313|WDR33	REV__ENSG00000136709|ENST00000322313|WDR33	MSMS	A375_MHC_IP_R2	2	480.1630859375	2	480.234384	958.454216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.026	1	97.782	97.282	98.282	0.75586								0	0	0	0.16876	1	36830	36830		30.225	0	1		+		20930	18952	15112	15221	20529	20529					-0.026673358766856836
IEQPVAPRPT	10	Unmodified	_IEQPVAPRPT_					0	0	0		ENSG00000167157|ENST00000372469|PRRX2	ENSG00000167157|ENST00000372469|PRRX2	ENSG00000167157|ENST00000372469|PRRX2	MULTI-SECPEP	A375_MHC_IP_R1	1	369.29730224609375	3	369.876746	1106.60841	0.046347	1.7143E-05	0.67902	0.00025115	0.72537	0.0002683	369.87686685786923	23.457	0.30649	23.457	23.278	23.584	0					7	5	2	0	0	0	0.94163	1	6484	6484		3.5871	3.5871	1	2783700			20931	7162	15113	15222	20530	20530					0.05936816880330298
IEQRLHHY	8	Unmodified	_IEQRLHHY_					0	0	0			REV__ENSG00000176920|ENST00000425340|FUT2	REV__ENSG00000176920|ENST00000425340|FUT2	MULTI-SECPEP	A375_MHC_IP_R1	1	548.6873779296875	2	548.28834	1094.56213	-0.54363	-0.00029807	-0.83498	-0.00045781	-1.3786	-0.00075588	548.2877597553344	43.979	0.56078	43.979	43.706	44.267	0					24	10	3	0	0	0	0.92636	1	15345	15345		16.942	16.942	1	4048200	+		20932	21428	15114	15223	20531	20531					0.018627967689099023
IEQSLKVAL	9	Unmodified	_IEQSLKVAL_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	A375_MHC_IP_R1	1	500.4749755859375	2	500.8055	999.596446	-0.38492	-0.00019277	0.050393	2.5237E-05	-0.33452	-0.00016753	500.80543430133235	73.461	0.86133	73.461	73.184	74.045	0					42	16	4	0	0	0	0.28216	1	26774	26774		34.402	2.0962	1	12181000	+		20933	16376	15115	15224	20532	20532					0.09663200137140393
IEQWHRQAEY	10	Unmodified	_IEQWHRQAEY_					0	0	0			REV__ENSG00000088035|ENST00000263440|ALG6	REV__ENSG00000088035|ENST00000263440|ALG6	MULTI-MSMS	A375_MHC_IP_R1	1	680.725830078125	2	680.32565	1358.63675	-0.59313	-0.00040352	-0.47704	-0.00032454	-1.0702	-0.00072806	680.3256446702615	103.34	0.56032	103.34	103.06	103.63	0					17	10	2	0	0	0	0.57505	1	37982	37982		22.736	9.6938	1	2333100	+		20934	16878	15116	15225	20533	20533					-0.028224852103676312
IERACFVLE	9	Unmodified	_IERACFVLE_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51640434-51640983:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1;ENST00000494718.5_1_X:51640434-51640983:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	MULTI-SECPEP	A375_MHC_IP_R2	2	540.6769409179688	2	540.281334	1078.54812	-0.89768	-0.000485	-1.7973	-0.00097106	-2.695	-0.0014561	540.2800480168686	74.653	1.3184	75.39	74.604	75.922	0.73752					42	25	3	0	0	0	0.4261	1	28204	28204		24.021	0	1	14209000			20935	8215;12693	15117	15226	20534	20534					0.011983832255964444
IERDNKTGF	9	Unmodified	_IERDNKTGF_					0	0	0			REV__tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	REV__tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	540.2284545898438	2	540.277638	1078.54072	-0.84893	-0.00045866	0.40899	0.00022097	-0.43994	-0.00023769	540.2777098087143	48.457	0.91001	49.214	48.729	49.639	0.75737					27	17	2	0	0	0	0.60101	1	18319	18319		14.838	0.93222	1	8874800	+		20936	28295	15118	15227	20535	20535					0.00459366949530704
IERDYVPVQK	10	Unmodified	_IERDYVPVQK_					0	0	0			REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	MULTI-MSMS	A375_MHC_IP_R1	1	416.63201904296875	3	416.231189	1245.67174	0.069282	2.8837E-05	0.63904	0.00026599	0.70832	0.00029482	416.2314109837441	19.243	0.65612	19.243	19.221	19.877	0					38	14	3	0	0	0	0.62871	1	4984	4984		18.721	0.38151	1	1026399999.9999999	+		20937	27101	15119	15228	20536	20536					0.0587275759755812
IERERKKL	8	Unmodified	_IERERKKL_					0	0	0		ENSG00000132357|ENST00000254691|CARD6;CARD6|p.A189Gfs*7|1|0.12|ENSG00000132357|chr5:40843433-40843434|-/GA|frameshift_variant	ENSG00000132357|ENST00000254691|CARD6	ENSG00000132357|ENST00000254691|CARD6	MULTI-SECPEP	A375_MHC_IP_R1	1	536.5648193359375	2	536.33529	1070.65603	-0.90495	-0.00048536	2.1794	0.0011689	1.2744	0.00068351	536.8388574861617	84.353	0.20063	84.353	84.241	84.442	0					5	3	2	0	0	0	0.972	1	30883	30883		4.756	2.6963	1	569280			20938	4397	15120	15229	20537	20537					0.12352515871180003
IERERYLELRL	11	Unmodified	_IERERYLELRL_					0	0	0			REV__nc|ENSG00000126733|Q96NX9-3|DACH2	REV__nc|ENSG00000126733|Q96NX9-3|DACH2	MULTI-SECPEP	A375_MHC_IP_R1	1	373.2651062011719	4	373.217592	1488.84126	0.13532	5.0504E-05	-0.18454	-6.8873E-05	-0.049219	-1.8369E-05	373.21750394935685	27.98	0.50443	27.98	27.634	28.138	0					17	9	2	0	0	0	1.0012	1	8614	8614		0.064406	0	1	1708700	+		20939	18392	15121	15230	20538	20538					0.11639453880138717
IERKLTESIY	10	Unmodified	_IERKLTESIY_					0	0	0			REV__ENSG00000106479|ENST00000223210|ZNF862	REV__ENSG00000106479|ENST00000223210|ZNF862	MULTI-SECPEP	A375_MHC_IP_R2	2	417.2461853027344	3	417.902961	1250.68705	-0.36524	-0.00015263	0.28499	0.0001191	-0.080249	-3.3536E-05	418.23743244538804	54.17	0.3558	54.921	54.712	55.068	0.75087					9	6	2	0	0	0	0.93406	1	20406	20406		6.1918	0	1	1725200	+		20940	17452	15122	15231	20539	20539					0.0717362439477256
IERKREPRREW	11	Unmodified	_IERKREPRREW_					0	0	0			REV__ENST00000544562.5_1_14:23067206-23078652:+|nuORF	REV__ENST00000544562.5_1_14:23067206-23078652:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	519.358154296875	3	518.958574	1553.85389	-0.70459	-0.00036565	-1.1251	-0.00058386	-1.8296	-0.00094951	518.9582268957804	66.306	0.35547	66.306	66.122	66.478	0					15	6	3	0	0	0	0.7328	1	24037	24037		6.2344	5.2208	1	2326700	+		20941	25989	15123	15232	20540	20540					0.0991191006301051
IERKREPRREW	11	Unmodified	_IERKREPRREW_					0	0	0			REV__ENST00000544562.5_1_14:23067206-23078652:+|nuORF	REV__ENST00000544562.5_1_14:23067206-23078652:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	518.7000122070312	3	518.958574	1553.85389	-0.70459	-0.00036565	-1.1251	-0.00058386	-1.8296	-0.00094951	518.9582268957804	66.306	0.35547	66.306	66.122	66.478	0					15	6	3	0	0	0	1.0008	1	23962	23962		0.29564	0.20079	1	2326700	+		20942	25989	15123	15232	20541	20541					0.0991191006301051
IERKTIEY	8	Unmodified	_IERKTIEY_					0	0	0			REV__ENSG00000205301|ENST00000511113|MGAT4D	REV__ENSG00000205301|ENST00000511113|MGAT4D	MULTI-SECPEP	A375_MHC_IP_R1	1	526.6922607421875	2	526.292756	1050.57096	-0.3586	-0.00018873	-0.30852	-0.00016237	-0.66712	-0.0003511	526.2927246366851	71.133	0.41048	71.133	70.953	71.364	0					11	7	2	0	0	0	0.90224	1	25853	25853		26.341	3.1929	1	1988000	+		20943	22567	15124	15233	20542	20542					0.04769725614710296
IERLFDQWY	9	Unmodified	_IERLFDQWY_					0	0	0		nc|ENSG00000163618|Q9ULU8-3|CADPS;ENSG00000163618|ENST00000383710|CADPS;nc|ENSG00000163618|Q9ULU8-4|CADPS;nc|ENSG00000163618|Q9ULU8-2|CADPS;ENST00000474560.1_1_3:62385083-62423949:-|nuORF	nc|ENSG00000163618|Q9ULU8-3|CADPS	nc|ENSG00000163618|Q9ULU8-3|CADPS	MULTI-SECPEP	A375_MHC_IP_R2	2	635.713623046875	2	635.316763	1268.61897	-0.70451	-0.00044758	-3.4337	-0.0021815	-4.1382	-0.0026291	635.3144977344925	89.388	0.60435	90.12	89.786	90.391	0.7318					18	11	2	0	0	0	0.74412	1	34005	34005		10.074	0	1	1439500			20944	6693	15125	15234	20543	20543					-0.004592004652295145
IERLIWLIILL	11	Unmodified	_IERLIWLIILL_					0	0	0			REV__ENSG00000126773|ENST00000406854|PCNX4	REV__ENSG00000126773|ENST00000406854|PCNX4	MSMS	A375_MHC_IP_R1	1	697.7883911132812	2	697.960323	1393.90609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.244	1	93.244	92.744	93.744	0								0	0	0	0.16353	1	34275	34275		0.35063	0	1		+		20945	18395	15126	15235	20544	20544					0.22489680424109793
IERLPDRT	8	Unmodified	_IERLPDRT_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-SECPEP	A375_MHC_IP_R1	1	500.6822204589844	2	500.282723	998.550893	-0.95353	-0.00047703	1.6415	0.0008212	0.68794	0.00034416	500.2826524449361	123.31	1.8151	123.31	122.83	124.65	0					77	35	3	0	0	0	0.86263	1	45958	45958		20.454	8.8133	1	34907000	+		20946	20388	15127	15236	20545	20545					0.051559746747557256
IERLVWVMF	9	Unmodified	_IERLVWVMF_					0	0	0			REV__ENST00000234296.6_1_2:201791570-201796098:-|nuORF	REV__ENST00000234296.6_1_2:201791570-201796098:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	398.3118591308594	3	398.223088	1191.64744	-0.1964	-7.8213E-05	-0.21477	-8.5528E-05	-0.41118	-0.00016374	398.223097315474	43.884	0.30343	43.884	43.706	44.01	0					9	5	2	0	0	0	0.74169	1	15251	15251		11.495	4.8643	1	1092500	+		20947	23083	15128	15237	20546	20546					0.05927825910316642
IERNEQLW	8	Unmodified	_IERNEQLW_					0	0	0		nc|ENSG00000167380|Q9NYT6-2|ZNF226;ENSG00000167380|ENST00000337433|ZNF226	nc|ENSG00000167380|Q9NYT6-2|ZNF226	nc|ENSG00000167380|Q9NYT6-2|ZNF226	MULTI-SECPEP	A375_MHC_IP_R2	2	545.0048217773438	2	544.28018	1086.54581	-1.0911	-0.00059388	0.078843	4.2913E-05	-1.0123	-0.00055097	544.2800928086492	58.155	0.50661	58.904	58.629	59.135	0.74894					17	9	2	0	0	0	0.8824	1	21986	21986		11.64	0	1	3415800			20948	7180	15129	15238	20547	20547					0.005996708121301708
IERPISRE	8	Unmodified	_IERPISRE_					0	0	0		ENST00000412444.5_1_2:213872086-213945912:-|nuORF;ENSG00000030419|ENST00000434687|IKZF2;nc|ENSG00000030419|Q9UKS7-8|IKZF2;ENST00000484040.1_1_2:213872086-213878776:-|nuORF;nc|ENSG00000030419|Q9UKS7-4|IKZF2;nc|ENSG00000030419|Q9UKS7-7|IKZF2;nc|ENSG00000030419|Q9UKS7-2|IKZF2	ENST00000412444.5_1_2:213872086-213945912:-|nuORF	ENST00000412444.5_1_2:213872086-213945912:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	500.6821594238281	2	500.282723	998.550893	-0.5148	-0.00025755	-0.4117	-0.00020597	-0.9265	-0.00046351	500.2824033853357	125.16	0.70118	125.16	124.7	125.4	0					17	13	2	0	0	0	0.77643	1	47468	47468		7.9102	0	1	20706000			20949	1109	15130	15239	20548	20548					0.051559746747557256
IERPKTAAKK	10	Unmodified	_IERPKTAAKK_					0	0	0		nc|ENSG00000032742|Q13099-3|IFT88;ENSG00000032742|ENST00000351808|IFT88;nc|ENSG00000032742|Q13099-1|IFT88;ENST00000482172.5_1_13:21237473-21265311:+|nuORF	nc|ENSG00000032742|Q13099-3|IFT88	nc|ENSG00000032742|Q13099-3|IFT88	MULTI-SECPEP	A375_MHC_IP_R1	1	381.10845947265625	3	381.239907	1140.69789	0.15093	5.7542E-05	-0.18043	-6.8786E-05	-0.029493	-1.1244E-05	381.2398669573116	19.293	0.13068	19.293	19.238	19.368	0					4	2	2	0	0	0	0.93733	1	4691	4691		3.0723	0	1	8604200			20950	1118	15131	15240	20549	20549					0.13317071559686156
IERREHNR	8	Unmodified	_IERREHNR_					0	0	0			REV__nc|ENSG00000112175|P22003-2|BMP5;REV__BMP5|p.R42K|1|0.27|ENSG00000112175|chr6:55874741-55874741|C/T|missense_variant	REV__nc|ENSG00000112175|P22003-2|BMP5	MULTI-SECPEP	A375_MHC_IP_R2	2	554.6893310546875	2	555.29977	1108.58499	-0.8265	-0.00045895	0.12282	6.8204E-05	-0.70367	-0.00039075	555.2997703257748	129.1	0.91019	129.34	128.76	129.67	0.23946					25	17	2	0	0	0	0.96266	1	50624	50624		11.64	1.5664	1	4945200	+		20951	17714;15516	15132	15241	20550	20550					0.03503815886369921
IERRVPTF	8	Unmodified	_IERRVPTF_					0	0	0		chr11:89278933-89284773|169|209.77|0.04|12.3|+|1|TE_info:L1MC3,L1MC3_dup8910,L1,LINE,donor,-,89278589,89278933|None,TYR|2	chr11:89278933-89284773|169|209.77|0.04|12.3|+|1|TE_info:L1MC3,L1MC3_dup8910,L1,LINE,donor,-,89278589,89278933|None,TYR|2	chr11:89278933-89284773|169|209.77|0.04|12.3|+|1|TE_info:L1MC3,L1MC3_dup8910,L1,LINE,donor,-,89278589,89278933|None,TYR|2	MULTI-SECPEP	A375_MHC_IP_R1	1	510.09375	2	509.295633	1016.57671	-0.34172	-0.00017404	-0.074921	-3.8157E-05	-0.41664	-0.00021219	509.29552478005587	35.108	0.50846	35.108	34.861	35.369	0					16	9	3	0	0	0	0.95423	1	11544	11544		7.9102	0	1	2991400			20952	402	15133	15242	20551	20551					0.06908868917048494
IERRWRREQEL	11	Unmodified	_IERRWRREQEL_					0	0	0		ENSG00000226321|ENST00000690015|CROCC2	ENSG00000226321|ENST00000690015|CROCC2	ENSG00000226321|ENST00000690015|CROCC2	MULTI-SECPEP	A375_MHC_IP_R2	2	524.1669921875	3	524.290212	1569.84881	-0.46016	-0.00024126	2.4347	0.0012765	1.9745	0.0010352	524.2917108591055	88.371	0.50542	89.103	88.774	89.279	0.7318					14	9	2	0	0	0	0.99971	1	33653	33653		0.92553	0.55886	1	2298200			20953	9703	15134	15243	20552	20552					0.08667606200447153
IERVVWFSV	9	Unmodified	_IERVVWFSV_					0	0	0			REV__nc|ENSG00000136828|Q5JS13-2|RALGPS1	REV__nc|ENSG00000136828|Q5JS13-2|RALGPS1	MULTI-SECPEP	A375_MHC_IP_R1	1	568.21875	2	567.818941	1133.62333	-0.55167	-0.00031325	1.2842	0.00072919	0.73253	0.00041594	567.8192768383577	129.58	0.3053	129.58	129.45	129.75	0					17	5	4	0	0	0	0.71071	1	49861	49861		10.074	0	1	22423000	+		20954	27246	15135	15244	20553	20553					0.06186308748328884
IERWHRAV	8	Unmodified	_IERWHRAV_					0	0	0		ENSG00000163632|ENST00000295896|C3orf49	ENSG00000163632|ENST00000295896|C3orf49	ENSG00000163632|ENST00000295896|C3orf49	MULTI-SECPEP	A375_MHC_IP_R1	1	533.9710083007812	2	533.798875	1065.5832	-0.69093	-0.00036882	-1.5009	-0.00080116	-2.1918	-0.00117	533.7978409418089	37.596	0.56195	37.596	37.505	38.067	0					16	10	2	0	0	0	0.972	1	12781	12781		5.2307	1.2863	1	1999500			20955	6696	15136	15245	20554	20554					0.05302806868417065
IERWLFHLA	9	Unmodified	_IERWLFHLA_					0	0	0			REV__nc|ENSG00000146414|Q149N8-2|SHPRH	REV__nc|ENSG00000146414|Q149N8-2|SHPRH	MULTI-SECPEP	A375_MHC_IP_R2	2	395.134765625	3	395.557348	1183.65021	-0.30351	-0.00012006	-3.3247	-0.0013151	-3.6282	-0.0014352	395.55586171752265	35.832	0.20358	36.596	36.486	36.69	0.76338					5	3	2	0	0	0	0.78351	1	12991	12991		2.7352	1.7729	1	672210	+		20956	19535	15137	15246	20555	20555					0.06573417359504674
IERWRKRYHEV	11	Unmodified	_IERWRKRYHEV_					0	0	0			REV__ENSG00000108592|ENST00000427159|FTSJ3	REV__ENSG00000108592|ENST00000427159|FTSJ3	MULTI-SECPEP	A375_MHC_IP_R1	1	524.2916259765625	3	524.623303	1570.84808	-0.49343	-0.00025886	0.96571	0.00050663	0.47228	0.00024777	524.62411923531	61.635	0.81847	61.635	61.176	61.994	0					34	15	3	0	0	0	1.0004	1	22218	22218		1.2148	0.70888	1	2460300	+		20957	17544	15138	15247	20556	20556					0.085488115513499
IERWRKRYHEV	11	Unmodified	_IERWRKRYHEV_					0	0	0			REV__ENSG00000108592|ENST00000427159|FTSJ3	REV__ENSG00000108592|ENST00000427159|FTSJ3	MULTI-MSMS	A375_MHC_IP_R2	2	524.654296875	3	524.623303	1570.84808	-0.80521	-0.00042243	-0.34169	-0.00017926	-1.1469	-0.00060169	524.6239781166988	60.759	0.80977	61.504	61.16	61.97	0.74504					30	15	3	0	0	0	0.73502	1	23065	23065		4.1166	2.787	1	2389100	+		20958	17544	15138	15247	20557	20557					0.085488115513499
IERWRKRYHEV	11	Unmodified	_IERWRKRYHEV_					0	0	0			REV__ENSG00000108592|ENST00000427159|FTSJ3	REV__ENSG00000108592|ENST00000427159|FTSJ3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	524.623303	1570.84808	-0.80521	-0.00042243	-0.34169	-0.00017926	-1.1469	-0.00060169	524.6239781166988	60.759	0.80977	61.504	61.16	61.97	0.74504	-0.065671	-0.0014524	NaN	4.1166	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2389100	+		20959	17544	15138	15247							0.085488115513499
IERYQNKWDML	11	Unmodified	_IERYQNKWDML_					0	0	0			REV__nc|ENSG00000172954|Q6UWP7-2|LCLAT1	REV__nc|ENSG00000172954|Q6UWP7-2|LCLAT1	MULTI-MSMS	A375_MHC_IP_R1	1	499.98077392578125	3	499.250254	1494.72893	-0.52907	-0.00026414	-2.9288	-0.0014622	-3.4579	-0.0017263	499.24955928933315	53.07	0.76044	53.07	52.744	53.505	0					36	14	4	0	0	0	0.7353	1	18980	18980		3.8459	1.0026	1	9706900	+		20960	27363	15139	15248	20558	20558					0.0013585681163021945
IESGRPAPEC	10	Unmodified	_IESGRPAPEC_					0	0	0		ENST00000558057.1_1_15:40400417-40401058:-|nuORF;ENST00000354670.8_1_15:40398220-40401058:-|nuORF	ENST00000558057.1_1_15:40400417-40401058:-|nuORF	ENST00000558057.1_1_15:40400417-40401058:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	529.173095703125	2	529.750398	1057.48624	-0.63219	-0.0003349	0.85354	0.00045216	0.22136	0.00011726	529.7507250716567	32.089	0.61485	32.089	31.718	32.333	0					13	11	2	0	0	0	0.70334	1	10305	10305		10.8	1.2555	1	1302500			20961	13460	15140	15249	20559	20559					-0.04019968193551904
IESICAKA	8	Unmodified	_IESICAKA_					0	0	0			REV__nc|ENSG00000095637|Q9BX66-12|SORBS1	REV__nc|ENSG00000095637|Q9BX66-12|SORBS1	MULTI-SECPEP	A375_MHC_IP_R2	2	417.1309814453125	2	417.723121	833.431689	-0.27075	-0.0001131	-0.57403	-0.00023979	-0.84478	-0.00035288	417.722817702386	37.972	0.61508	38.746	38.382	38.997	0.77451					16	11	2	0	0	0	0.91495	1	13918	13918		18.135	1.1927	1	1155900	+		20962	27138	15141	15250	20560	20560					0.008310647256848824
IESKLLSLLLP	11	Unmodified	_IESKLLSLLLP_					0	0	0		ENSG00000157856|ENST00000288710|DRC1	ENSG00000157856|ENST00000288710|DRC1	ENSG00000157856|ENST00000288710|DRC1	MSMS	A375_MHC_IP_R2	2	613.4199829101562	2	613.391939	1224.76933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.095	1	68.83	68.33	69.33	0.73511								0	0	0	0.16297	1	25805	25805		3.2813	0.28607	1				20963	6272	15142	15251	20561	20561					0.16593146473724119
IESKVDYQY	9	Unmodified	_IESKVDYQY_					0	0	0			REV__ENST00000575695.5_1_16:74709220-74709647:-|nuORF	REV__ENST00000575695.5_1_16:74709220-74709647:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	573.2811279296875	2	572.779679	1143.5448	-0.55861	-0.00031996	-1.7456	-0.00099985	-2.3042	-0.0013198	573.7802684575666	57.593	0.50856	58.342	58.069	58.578	0.74894					26	9	5	0	0	0	0.58271	1	21677	21677		20.454	17.458	1	2333200	+		20964	20853	15143	15252	20562	20562					-0.021225883474244256
IESLLSRR	8	Unmodified	_IESLLSRR_					0	0	0			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MSMS	A375_MHC_IP_R1	1	487.35845947265625	2	487.293091	972.571629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.4	1	134.4	133.9	134.9	0								0	0	0	0.16876	1	51829	51829		32.117	0	1		+		20965	18434	15144	15253	20563	20563					0.08424565054428967
IESLTMDGLY	10	Unmodified	_IESLTMDGLY_					0	0	0			REV__ENSG00000137860|ENST00000347644|SLC28A2	REV__ENSG00000137860|ENST00000347644|SLC28A2	MULTI-SECPEP	A375_MHC_IP_R1	1	571.91796875	2	571.275915	1140.53728	-0.25942	-0.0001482	3.9434	0.0022528	3.684	0.0021046	571.2758656133304	59.957	0.25487	59.957	59.854	60.109	0					5	4	2	0	0	0	0.91556	1	21564	21564		10.074	0.6908	1	361300	+		20966	19045	15145	15254	20564	20564					-0.027370639393438978
IESQCGSQIY	10	Unmodified	_IESQCGSQIY_					0	0	0			REV__FLG2|p.G320E|1|0.3|ENSG00000143520|chr1:152356827-152356827|C/T|missense_variant	REV__FLG2|p.G320E|1|0.3|ENSG00000143520|chr1:152356827-152356827|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	564.4140014648438	2	564.255514	1126.49647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.85	1	109.59	109.09	110.09	0.74684								0	0	0	0.15417	1	41091	41091		7.2892	0.56607	1		+		20967	26633	15146	15255	20565	20565					-0.06171405258942286
IESSLQVEDE	10	Unmodified	_IESSLQVEDE_					0	0	0		ENSG00000198932|ENST00000537097|GPRASP1	ENSG00000198932|ENST00000537097|GPRASP1	ENSG00000198932|ENST00000537097|GPRASP1	MULTI-SECPEP	A375_MHC_IP_R1	1	574.3310546875	2	574.769508	1147.52446	-0.31743	-0.00018245	0.22687	0.0001304	-0.090563	-5.2053E-05	575.2717965040277	41.957	0.40689	41.957	41.725	42.132	0					10	7	2	0	0	0	0.87163	1	14466	14466		13.906	0.86358	1	1480700			20968	9376	15147	15256	20566	20566					-0.04339803797870445
IESTKCFKY	9	Unmodified	_IESTKCFKY_					0	0	0			REV__tr|U7SVV7|U7SVV7_FUSNUOxygen-independentcoproporphyrinogenIIIoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01354PE=4SV=1	REV__tr|U7SVV7|U7SVV7_FUSNUOxygen-independentcoproporphyrinogenIIIoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01354PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	561.2420654296875	2	559.781167	1117.54778	-0.59117	-0.00033092	-0.042902	-2.4016E-05	-0.63407	-0.00035494	559.781105416045	83.871	1.2669	83.871	83.125	84.391	0					67	24	4	0	0	0	0.60101	1	30772	30772		14.838	4.0143	1	18788000	+		20969	28598	15148	15257	20567	20567					-0.006290364942515225
IESVIKELW	9	Unmodified	_IESVIKELW_					0	0	0		ENSG00000121274|ENST00000561678|TENT4B;ENST00000562717.1_1_16:50188117-50258568:+|nuORF;nc|ENSG00000121274|Q8NDF8-4|TENT4B;nc|ENSG00000121274|Q8NDF8-2|TENT4B;nc|ENSG00000121274|Q8NDF8|TENT4B;nc|ENSG00000121274|Q8NDF8-3|TENT4B;nc|ENSG00000121274|Q8NDF8-5|TENT4B	ENSG00000121274|ENST00000561678|TENT4B	ENSG00000121274|ENST00000561678|TENT4B	MULTI-MSMS	A375_MHC_IP_R1	1	559.21826171875	2	558.818607	1115.62266	-0.46271	-0.00025857	0.17425	9.7373E-05	-0.28847	-0.0001612	558.8186491271745	101.02	0.65812	101.02	100.79	101.45	0					27	12	3	0	0	0	0.010044	1	37112	37112		125.04	63.68	1	3470600			20970	3714	15149	15258	20568	20568					0.06947469308624932
IESVIKELW	9	Unmodified	_IESVIKELW_					0	0	0		ENSG00000121274|ENST00000561678|TENT4B;ENST00000562717.1_1_16:50188117-50258568:+|nuORF;nc|ENSG00000121274|Q8NDF8-4|TENT4B;nc|ENSG00000121274|Q8NDF8-2|TENT4B;nc|ENSG00000121274|Q8NDF8|TENT4B;nc|ENSG00000121274|Q8NDF8-3|TENT4B;nc|ENSG00000121274|Q8NDF8-5|TENT4B	ENSG00000121274|ENST00000561678|TENT4B	ENSG00000121274|ENST00000561678|TENT4B	MULTI-MATCH	A375_MHC_IP_R2	2		2	558.818607	1115.62266	-0.48517	-0.00027112	0.17476	9.7657E-05	-0.31041	-0.00017346	558.8187295141186	100.2	0.51005	100.96	100.73	101.24	0.76278	-0.027438	3.1827E-07	NaN	125.04	24	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3719900			20971	3714	15149	15258							0.06947469308624932
IETEECYSF	9	Unmodified	_IETEECYSF_					0	0	0			REV__ENSG00000214102|ENST00000397541|WEE2	REV__ENSG00000214102|ENST00000397541|WEE2	MULTI-MSMS	A375_MHC_IP_R2	2	560.7235717773438	2	560.728797	1119.44304	-0.52914	-0.0002967	-2.3546	-0.0013203	-2.8837	-0.001617	560.726602783979	90.773	0.30412	91.508	91.362	91.666	0.7345					6	5	2	0	0	0	0.63811	1	34513	34513		12.532	4.6214	1	749590	+		20972	22645	15150	15259	20569	20569					-0.11190202761508772
IETELIYKY	9	Unmodified	_IETELIYKY_					0	0	0		nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	MULTI-SECPEP	A375_MHC_IP_R1	1	586.7156372070312	2	586.315897	1170.61724	-0.035335	-2.0717E-05	0.14789	8.6711E-05	0.11256	6.5993E-05	586.3159618696283	71.79	0.45407	71.79	71.665	72.119	0					19	8	3	0	0	0	0.16764	1	26123	26123		60.074	27.288	1	4910500			20973	4509	15151	15260	20570	20570					0.038757457261453965
IETELIYKY	9	Unmodified	_IETELIYKY_					0	0	0		nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	MULTI-SECPEP	A375_MHC_IP_R2	2	586.7158203125	2	586.315897	1170.61724	-0.72281	-0.00042379	0.30535	0.00017903	-0.41746	-0.00024476	586.3160923915076	71.185	0.45628	71.919	71.706	72.162	0.73421					19	8	3	0	0	0	0.087712	1	26993	26993		75.761	53.025	1	4514400			20974	4509	15151	15260	20571	20571					0.038757457261453965
IETGNGSCYL	10	Unmodified	_IETGNGSCYL_					0	0	0			REV__ENSG00000165899|ENST00000547103|OTOGL	REV__ENSG00000165899|ENST00000547103|OTOGL	MULTI-MSMS	A375_MHC_IP_R1	1	530.1990966796875	2	528.736957	1055.45936	-0.51613	-0.0002729	-0.49453	-0.00026147	-1.0107	-0.00053437	528.737118171753	77.493	1.7245	77.493	77.032	78.756	0					86	33	5	0	0	0	0.70329	2	28223	28223;28269		10.824	0.75	1	7749800	+		20975	20635	15152	15261	20572;20573	20572					-0.06615076804746423
IETLQEQSL	9	Unmodified	_IETLQEQSL_					0	0	0			REV__tr|U7SS27|U7SS27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01518PE=4SV=1	REV__tr|U7SS27|U7SS27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01518PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	531.1219482421875	2	530.779679	1059.5448	-0.55028	-0.00029208	-1.8306	-0.00097164	-2.3809	-0.0012637	530.7787090189121	88.928	0.45548	89.66	89.331	89.786	0.7318					10	8	2	0	0	0	0.55359	1	33893	33893		21.747	5.8995	1	1183800	+		20976	28414	15153	15262	20574	20574					0.01741411652574243
IETLSMTISY	10	Unmodified	_IETLSMTISY_					0	0	0			REV__nc|ENSG00000243710|Q96MR6-2|CFAP57	REV__nc|ENSG00000243710|Q96MR6-2|CFAP57	MULTI-SECPEP	A375_MHC_IP_R2	2	578.6635131835938	2	579.291565	1156.56858	-0.22895	-0.00013263	2.3483	0.0013603	2.1193	0.0012277	579.7943093493044	83.233	0.25166	83.973	83.797	84.049	0.73962					6	4	2	0	0	0	0.78945	1	31663	31663		19.257	4.4187	1	2477300	+		20977	22812	15154	15263	20575	20575					-0.0034449090524049097
IETNHNLPPS	10	Unmodified	_IETNHNLPPS_					0	0	0		ENST00000495356.5_1_X:153052908-153059781:-|nuORF;nc|ENSG00000067829|P51553-2|IDH3G;ENSG00000067829|ENST00000217901|IDH3G	ENST00000495356.5_1_X:153052908-153059781:-|nuORF	ENST00000495356.5_1_X:153052908-153059781:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	560.6873779296875	2	561.28292	1120.55129	-0.32347	-0.00018156	-0.1027	-5.7644E-05	-0.42617	-0.0002392	561.2827193900469	51.937	0.55875	51.937	51.475	52.034	0					17	10	2	0	0	0	0.8125	1	18481	18481		8.7454	0	1	7152700			20978	1445	15155	15264	20576	20576					-0.004166503960504997
IETRLKTF	8	Unmodified	_IETRLKTF_					0	0	0		tr|U7SZE5|U7SZE5_FUSNU4-diphosphocytidyl-2-C-methyl-D-erythritolkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispEPE=3SV=1	tr|U7SZE5|U7SZE5_FUSNU4-diphosphocytidyl-2-C-methyl-D-erythritolkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispEPE=3SV=1	tr|U7SZE5|U7SZE5_FUSNU4-diphosphocytidyl-2-C-methyl-D-erythritolkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispEPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	504.69732666015625	2	504.297842	1006.58113	-0.36739	-0.00018527	-0.32579	-0.0001643	-0.69318	-0.00034957	504.29770372503293	55.304	0.71315	55.304	55.025	55.738	0					29	13	3	0	0	0	0.96266	1	19769	19769		16.942	3.4344	1	6540300			20979	29857	15156	15265	20577	20577					0.07810333339944009
IETSYVKVL	9	Unmodified	_IETSYVKVL_					0	0	0		ENSG00000268606|ENST00000684311|MAGEA2;ENSG00000183305|ENST00000682532|MAGEA2B;chrX:152753623-152753788|269|13.78|0.02|9.76|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152753391-152753788|277|27.37|0.03|9.77|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152753391-152753542|267|20.52|0.02|9.74|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152752513-152753788|298|28.03|0.06|8.93|-|ENST00000620710|MAGEA2,MAGEA2;chrX:152752513-152753313|286|46.87|0.07|9.47|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751822-152752394|297|32.94|0.06|9.21|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751574-152753788|270|15.7|0.02|9.72|-|ENST00000611674|MAGEA2,MAGEA2;chrX:152751574-152752394|306|57.07|0.12|8.92|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152751574-152751725|302|47.9|0.07|9.45|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751428-152751509|319|92.49|0.18|9.0|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152714682-152716896|294|25.49|0.02|10.05|+|ENST00000370293|MAGEA2B,MAGEA2B;ENSG00000197172|ENST00000329342|MAGEA6	ENSG00000268606|ENST00000684311|MAGEA2;ENSG00000197172|ENST00000329342|MAGEA6	ENSG00000197172|ENST00000329342|MAGEA6	MULTI-MSMS	A375_MHC_IP_R1	1	526.7052612304688	2	526.305332	1050.59611	-0.70766	-0.00037245	1.2918	0.00067989	0.58415	0.00030744	526.3060807251771	66.692	0.71341	66.692	66.377	67.091	0					21	13	2	0	0	0	0.021859	1	24134	24134		89.401	58.764	1	2760700			20980	522;9127	15157	15266	20578	20578					0.07283780417287744
IETSYVKVL	9	Unmodified	_IETSYVKVL_					0	0	0		ENSG00000268606|ENST00000684311|MAGEA2;ENSG00000183305|ENST00000682532|MAGEA2B;chrX:152753623-152753788|269|13.78|0.02|9.76|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152753391-152753788|277|27.37|0.03|9.77|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152753391-152753542|267|20.52|0.02|9.74|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152752513-152753788|298|28.03|0.06|8.93|-|ENST00000620710|MAGEA2,MAGEA2;chrX:152752513-152753313|286|46.87|0.07|9.47|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751822-152752394|297|32.94|0.06|9.21|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751574-152753788|270|15.7|0.02|9.72|-|ENST00000611674|MAGEA2,MAGEA2;chrX:152751574-152752394|306|57.07|0.12|8.92|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152751574-152751725|302|47.9|0.07|9.45|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751428-152751509|319|92.49|0.18|9.0|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152714682-152716896|294|25.49|0.02|10.05|+|ENST00000370293|MAGEA2B,MAGEA2B;ENSG00000197172|ENST00000329342|MAGEA6	ENSG00000268606|ENST00000684311|MAGEA2;ENSG00000197172|ENST00000329342|MAGEA6	ENSG00000197172|ENST00000329342|MAGEA6	MULTI-SECPEP	A375_MHC_IP_R2	2	526.7051391601562	2	526.305332	1050.59611	-0.65434	-0.00034438	0.88571	0.00046616	0.23137	0.00012177	526.3058614430935	65.751	0.763	66.489	66.121	66.884	0.73811					26	14	3	0	0	0	0.14606	1	24960	24960		63.961	39.94	1	3279700			20981	522;9127	15157	15266	20579	20579					0.07283780417287744
IEVFKKLTRIL	11	Unmodified	_IEVFKKLTRIL_					0	0	0			REV__tr|U7SUL3|U7SUL3_FUSNUGlyceraldehyde-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01214PE=3SV=1	REV__tr|U7SUL3|U7SUL3_FUSNUGlyceraldehyde-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01214PE=3SV=1	MSMS	A375_MHC_IP_R2	2	680.5403442382812	2	680.439755	1358.86496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.53	1	103.29	102.79	103.79	0.76428								0	0	0	0.16334	1	38845	38845		1.3295	0	1		+		20982	28565	15158	15267	20580	20580					0.19987919384607267
IEVGGSVNFDG	11	Unmodified	_IEVGGSVNFDG_					0	0	0		FEM1C|p.F483Sfs*15|1|0.08|ENSG00000145780|chr5:115524716-115524716|G/-|frameshift_variant;ENSG00000145780|ENST00000274457|FEM1C	FEM1C|p.F483Sfs*15|1|0.08|ENSG00000145780|chr5:115524716-115524716|G/-|frameshift_variant	FEM1C|p.F483Sfs*15|1|0.08|ENSG00000145780|chr5:115524716-115524716|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6615600585938	2	547.261653	1092.50875	-0.37444	-0.00020492	-0.4514	-0.00024704	-0.82584	-0.00045195	547.2613947428637	54.289	0.50428	54.289	54.063	54.567	0					21	9	3	0	0	0	0.9836	1	19458	19458		11.495	5.7629	1	3277700			20983	5581	15159	15268	20581	20581					-0.03380045524272646
IEVIRFHIWWS	11	Unmodified	_IEVIRFHIWWS_					0	0	0			REV__ADAM29|p.G192S|1|0.76|ENSG00000168594|chr4:174976099-174976099|G/A|missense_variant	REV__ADAM29|p.G192S|1|0.76|ENSG00000168594|chr4:174976099-174976099|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	743.834228515625	2	743.403704	1484.79285	-0.78811	-0.00058589	0.37546	0.00027912	-0.41265	-0.00030676	743.4041071618159	133.47	0.61095	133.47	133.2	133.81	0					21	11	2	0	0	0	0.7362	1	51559	51559		2.9952	1.6657	1	4131200	+		20984	15318	15160	15269	20582	20582					0.06985005030901448
IEVIRFHIWWS	11	Unmodified	_IEVIRFHIWWS_					0	0	0			REV__ADAM29|p.G192S|1|0.76|ENSG00000168594|chr4:174976099-174976099|G/A|missense_variant	REV__ADAM29|p.G192S|1|0.76|ENSG00000168594|chr4:174976099-174976099|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	743.403704	1484.79285	-0.78811	-0.00058589	0.37546	0.00027912	-0.41265	-0.00030676	743.4041071618159	133.47	0.61095	133.47	133.2	133.81	0	-0.055339	-6.5628E-05	NaN	2.9952	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4131200	+		20985	15318	15160	15269							0.06985005030901448
IEVIRFHIWWS	11	Unmodified	_IEVIRFHIWWS_					0	0	0			REV__ADAM29|p.G192S|1|0.76|ENSG00000168594|chr4:174976099-174976099|G/A|missense_variant	REV__ADAM29|p.G192S|1|0.76|ENSG00000168594|chr4:174976099-174976099|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	743.403704	1484.79285	-0.77367	-0.00057515	0.44293	0.00032928	-0.33073	-0.00024587	743.4039292231965	133.41	0.6076	133.58	133.3	133.91	0.16487	0.055339	3.4687E-05	NaN	2.9952	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4182400	+		20986	15318	15160	15269							0.06985005030901448
IEVIRMQIL	9	Unmodified	_IEVIRMQIL_					0	0	0		nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-3|PKN2	nc|ENSG00000065243|Q16513-2|PKN2	nc|ENSG00000065243|Q16513-2|PKN2	MULTI-SECPEP	A375_MHC_IP_R1	1	372.9366760253906	3	372.22661	1113.658	0.11642	4.3333E-05	-1.2336	-0.00045917	-1.1172	-0.00041584	372.2264614584707	27.912	0.35302	27.912	27.735	28.088	0					11	6	2	0	0	0	0.78798	1	8470	8470		4.5289	0.33936	1	3029200			20987	1372	15161	15270	20583	20583					0.10571808564782259
IEVNGKQSW	9	Unmodified	_IEVNGKQSW_					0	0	0		nc|ENSG00000111913|Q9Y4F9-2|RIPOR2;ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2	nc|ENSG00000111913|Q9Y4F9-2|RIPOR2	nc|ENSG00000111913|Q9Y4F9-2|RIPOR2	MULTI-MSMS	A375_MHC_IP_R1	1	531.17529296875	2	530.774731	1059.53491	-0.68305	-0.00036254	1.0422	0.00055316	0.35912	0.00019061	530.7752787076151	38.497	0.71321	38.497	38.067	38.78	0					25	13	3	0	0	0	0.04699	1	13096	13096		65.474	21.615	1	5033800			20988	3042	15162	15271	20584	20584					0.0075226843787277176
IEVPVELRQ	9	Unmodified	_IEVPVELRQ_					0	0	0			REV__BCAM|p.M198I|1|0.27|ENSG00000187244|chr19:44813339-44813339|G/A|missense_variant	REV__BCAM|p.M198I|1|0.27|ENSG00000187244|chr19:44813339-44813339|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	361.59014892578125	3	361.544996	1081.61316	-0.5258	-0.0001901	0.82364	0.00029778	0.29784	0.00010768	361.5452780738946	21.487	0.50848	22.106	21.878	22.387	0.61932					14	9	2	0	0	0	0.69884	1	6705	6705		7.1017	0.90987	1	5502000	+		20989	15499	15163	15272	20585	20585					0.07561701023087153
IEWEHLDKKKF	11	Unmodified	_IEWEHLDKKKF_					0	0	0		ENSG00000160785|ENST00000359511|SLC25A44	ENSG00000160785|ENST00000359511|SLC25A44	ENSG00000160785|ENST00000359511|SLC25A44	MULTI-MSMS	A375_MHC_IP_R2	2	491.6444091796875	3	491.601393	1471.78235	-1.1734	-0.00057687	0.76868	0.00037788	-0.40477	-0.00019898	491.9361831999297	37.071	0.30316	37.842	37.665	37.968	0.7709					9	5	2	0	0	0	0.70919	1	13554	13554		14.838	1.9092	1	1552400			20990	6441	15164	15273	20586	20586					0.06532977585743538
IEWHARDRRRF	11	Unmodified	_IEWHARDRRRF_					0	0	0			REV__CYP51A1|p.R264W|1|0.23|ENSG00000001630|chr7:92123834-92123834|G/A|missense_variant	REV__CYP51A1|p.R264W|1|0.23|ENSG00000001630|chr7:92123834-92123834|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	771.4273681640625	2	771.413457	1540.81236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.84	1	113.56	113.06	114.06	0.72458								0	0	0	0.16302	1	42534	42534		2.9952	0	1		+		20991	15960	15165	15274	20587	20587					0.06358774094314867
IEWLESHQ	8	Unmodified	_IEWLESHQ_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5;ENST00000509378.1_1_4:165110937-165111516:+|nuORF	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MSMS	A375_MHC_IP_R1	1	522.6902465820312	2	521.253631	1040.49271	-0.44137	-0.00023007	-0.037412	-1.9501E-05	-0.47878	-0.00024957	521.2535734120156	53.584	1.0129	53.584	53.301	54.314	0					50	19	4	0	0	0	0.77488	1	19174	19174		13.508	0.97634	1	43747000			20992	1188	15166	15275	20588	20588					-0.025917069705201357
IEWRVEAP	8	Unmodified	_IEWRVEAP_					0	0	0			REV__ENSG00000112234|ENST00000369244|FBXL4	REV__ENSG00000112234|ENST00000369244|FBXL4	MULTI-MSMS	A375_MHC_IP_R2	2	501.69720458984375	2	500.266542	998.51853	-0.5282	-0.00026424	0.064316	3.2175E-05	-0.46388	-0.00023206	500.2665569855407	63.079	0.86316	63.822	63.534	64.397	0.74263					40	16	4	0	0	0	0.76248	1	23835	23835		16.942	16.942	1	23334000	+		20993	17717	15167	15276	20589	20589					0.01921187271761937
IEWRWRRRRVP	11	Unmodified	_IEWRWRRRRVP_					0	0	0		ENST00000574710.1_1_17:4843168-4843264:-|nuORF	ENST00000574710.1_1_17:4843168-4843264:-|nuORF	ENST00000574710.1_1_17:4843168-4843264:-|nuORF	MSMS	A375_MHC_IP_R2	2	805.5059814453125	2	805.468567	1608.92258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.43	1	109.18	108.68	109.68	0.75436								0	0	0	0.16353	1	40941	40941		0.35063	0.043601	1				20994	13631	15168	15277	20590	20590					0.1424761915336603
IEWTSLTSF	9	Unmodified	_IEWTSLTSF_					0	0	0		ENST00000497136.6_1_10:122626245-122665534:+|nuORF;ENSG00000120008|ENST00000263461|WDR11	ENST00000497136.6_1_10:122626245-122665534:+|nuORF	ENST00000497136.6_1_10:122626245-122665534:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	542.1875610351562	2	542.27149	1082.52843	-0.72125	-0.00039111	-0.056605	-3.0695E-05	-0.77786	-0.00042181	542.772512177049	98.872	0.25407	99.632	99.403	99.657	0.75977					5	4	2	0	0	0	0.71541	1	37482	37482		11.64	0	1	1434200			20995	3644	15169	15278	20591	20591					-0.009536695135238915
IEWVKRQK	8	Unmodified	_IEWVKRQK_					0	0	0		ENSG00000256188|ENST00000539585|TAS2R30	ENSG00000256188|ENST00000539585|TAS2R30	ENSG00000256188|ENST00000539585|TAS2R30	MULTI-SECPEP	A375_MHC_IP_R1	1	363.63140869140625	3	362.885464	1085.63456	0.55697	0.00020211	-2.9799	-0.0010814	-2.4229	-0.00087925	362.8837068492235	49.535	0.4576	49.535	49.184	49.642	0					11	8	2	0	0	0	0.972	1	17551	17551		3.2813	0	1	538210			20996	9894	15170	15279	20592	20592					0.09517130842482402
IEYERKNL	8	Unmodified	_IEYERKNL_					0	0	0			REV__ENSG00000069248|ENST00000261396|NUP133	REV__ENSG00000069248|ENST00000261396|NUP133	MULTI-MSMS	A375_MHC_IP_R2	2	355.4598388671875	3	355.529346	1063.56621	-0.46902	-0.00016675	0.012956	4.6063E-06	-0.45607	-0.00016215	355.5293081496473	41.168	0.35562	41.942	41.743	42.098	0.77451					9	6	2	0	0	0	0.77624	1	15299	15299		6.2058	0	1	2878100	+		20997	16555	15171	15280	20593	20593					0.036968414719467546
IEYEVDPDLHW	11	Unmodified	_IEYEVDPDLHW_					0	0	0			REV__ENSG00000196090|ENST00000373187|PTPRT	REV__ENSG00000196090|ENST00000373187|PTPRT	MULTI-MSMS	A375_MHC_IP_R1	1	472.9539489746094	3	472.554108	1414.6405	-0.4501	-0.0002127	-0.079238	-3.7444E-05	-0.52934	-0.00025014	472.55415226088684	54.958	0.50644	54.958	54.67	55.177	0					21	9	3	0	0	0	0.73439	1	19644	19644		4.7159	0.30977	1	2903300	+		20998	22156	15172	15281	20594	20594					-0.05023860227197474
IEYGDYCEY	9	Unmodified	_IEYGDYCEY_					0	0	0			REV__nc|ENSG00000134365|Q92496-3|CFHR4	REV__nc|ENSG00000134365|Q92496-3|CFHR4	MSMS	A375_MHC_IP_R2	2	577.8602294921875	2	577.720972	1153.42739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.163	1	82.906	82.406	83.406	0.74293								0	0	0	0.15486	1	31210	31210		7.9102	2.6795	1		+		20999	18773	15173	15282	20595	20595					-0.1431848927854844
IEYLKKTNSSK	11	Unmodified	_IEYLKKTNSSK_					0	0	0			REV__tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	REV__tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	438.3152160644531	3	437.581998	1309.72417	-0.7372	-0.00032258	-0.22067	-9.656E-05	-0.95786	-0.00041914	437.91583737530965	37.447	0.56193	38.218	37.867	38.429	0.7709					15	10	2	0	0	0	0.99732	1	13778	13778		4.1166	0	1	5144800	+		21000	28799	15174	15283	20596	20596					0.08169295940501797
IEYTACDATY	10	Unmodified	_IEYTACDATY_					0	0	0		ENST00000547729.1_1_12:42826097-42826994:-|nuORF	ENST00000547729.1_1_12:42826097-42826994:-|nuORF	ENST00000547729.1_1_12:42826097-42826994:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	575.6659545898438	2	575.242072	1148.46959	-0.38216	-0.00021983	0.94715	0.00054484	0.565	0.00032501	575.2425801793728	66.362	0.45807	66.362	66.122	66.58	0					11	8	2	0	0	0	0.91556	1	23951	23951		10.074	2.1638	1	1313100			21001	13346	15175	15284	20597	20597					-0.09870513870146169
IEYYFFKG	8	Unmodified	_IEYYFFKG_					0	0	0		tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1	tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1	tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	355.92529296875	3	356.179654	1065.51713	-0.26604	-9.4758E-05	4.482	0.0015964	4.216	0.0015017	356.1817099924887	25.933	1.1127	25.933	25.765	26.878	0					27	21	3	0	0	0	0.97144	1	8025	8025		10.824	0.75	1	1713900			21002	29606	15176	15285	20598	20598					-0.013004468170038308
IEYYTKLEQKL	11	Unmodified	_IEYYTKLEQKL_					0	0	0		nc|ENSG00000137216|Q5T3F8-2|TMEM63B;ENST00000534326.5_1_6:44102273-44116742:+|nuORF;nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B	nc|ENSG00000137216|Q5T3F8-2|TMEM63B	nc|ENSG00000137216|Q5T3F8-2|TMEM63B	MSMS	A375_MHC_IP_R2	2	476.6213684082031	3	476.597537	1426.77078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.764	1	87.497	86.997	87.997	0.733								0	0	0	0.16309	1	32995	32995		2.6312	0	1				21003	4870	15177	15286	20599	20599					0.07446735771804924
IFADDQWPC	9	Unmodified	_IFADDQWPC_					0	0	0			REV__nc|ENSG00000174233|O43306-2|ADCY6	REV__nc|ENSG00000174233|O43306-2|ADCY6	MSMS	A375_MHC_IP_R2	2	547.7100830078125	2	547.734217	1093.45388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.047	1	98.807	98.307	99.307	0.75977								0	0	0	0.15486	1	37204	37204		12.532	1.7076	1		+		21004	21275	15178	15287	20600	20600					-0.0891075559654837
IFAKDNLP	8	Unmodified	_IFAKDNLP_					0	0	0			REV__ENSG00000080986|ENST00000261597|NDC80	REV__ENSG00000080986|ENST00000261597|NDC80	MULTI-SECPEP	A375_MHC_IP_R1	1	459.1182861328125	2	459.258185	916.501818	-0.36917	-0.00016954	-0.0418	-1.9197E-05	-0.41097	-0.00018874	459.2581602083456	41.893	0.3582	41.893	41.674	42.032	0					11	6	2	0	0	0	0.96266	1	14465	14465		16.942	9.6531	1	1872100	+		21005	16762	15179	15288	20601	20601					0.0402268638579244
IFATQRQSF	9	Unmodified	_IFATQRQSF_					0	0	0		nc|ENSG00000104812|P13807-2|GYS1;ENSG00000104812|ENST00000323798|GYS1;GYS1|p.P441S|1|0.19|ENSG00000104812|chr19:48974721-48974721|G/A|missense_variant	nc|ENSG00000104812|P13807-2|GYS1	nc|ENSG00000104812|P13807-2|GYS1	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6776123046875	2	549.290548	1096.56654	-0.84582	-0.0004646	1.6121	0.00088549	0.76624	0.00042089	549.2907664265068	74.854	0.65746	75.592	75.315	75.973	0.73751					19	12	2	0	0	0	0.63749	1	28437	28437		16.149	0	1	1426100			21006	2538	15180	15289	20602	20602					0.022122611917893664
IFDNGNGSNY	10	Unmodified	_IFDNGNGSNY_					0	0	0			REV__NRXN1|p.D948N|1|0.26|ENSG00000179915|chr2:50497370-50497370|C/T|missense_variant	REV__NRXN1|p.D948N|1|0.26|ENSG00000179915|chr2:50497370-50497370|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	550.6680908203125	2	550.735803	1099.45705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.58	1	113.58	113.08	114.08	0								0	0	0	0.14601	1	41636	41636		25.399	0	1		+		21007	27631	15181	15290	20603	20603					-0.08869789218169899
IFDSEFIPAY	10	Unmodified	_IFDSEFIPAY_					0	0	0			REV__ENSG00000162771|ENST00000294829|GARIN4	REV__ENSG00000162771|ENST00000294829|GARIN4	MULTI-SECPEP	A375_MHC_IP_R1	1	400.99932861328125	3	401.197374	1200.57029	-0.61178	-0.00024545	4.3536	0.0017467	3.7418	0.0015012	401.19840726580986	23.578	0.40754	23.578	23.33	23.737	0					10	7	2	0	0	0	0.91556	1	6498	6498		5.7834	0	1	2586300	+		21008	20307	15182	15291	20604	20604					-0.021971138249682554
IFDSPADYSY	10	Unmodified	_IFDSPADYSY_					0	0	0			REV__ENSG00000088325|ENST00000300403|TPX2	REV__ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	A375_MHC_IP_R1	1	589.6558227539062	2	589.256037	1176.49752	-0.21513	-0.00012676	1.3648	0.00080424	1.1497	0.00067748	589.255960548911	78.115	0.45786	78.115	77.793	78.251	0					19	8	3	0	0	0	0.60556	1	28502	28502		20.454	0	1	2915600	+		21009	16883	15183	15292	20605	20605					-0.08366867618406104
IFDSPADYSY	10	Unmodified	_IFDSPADYSY_					0	0	0			REV__ENSG00000088325|ENST00000300403|TPX2	REV__ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	A375_MHC_IP_R2	2	589.6559448242188	2	589.256037	1176.49752	-0.57483	-0.00033872	0.67003	0.00039482	0.095193	5.6093E-05	589.2560397547638	77.438	0.61029	78.181	77.857	78.468	0.74293					21	11	3	0	0	0	0.60556	1	29417	29417		20.454	4.6064	1	2143200	+		21010	16883	15183	15292	20606	20606					-0.08366867618406104
IFDSPADYSY	10	Unmodified	_IFDSPADYSY_					0	0	0			REV__ENSG00000088325|ENST00000300403|TPX2	REV__ENSG00000088325|ENST00000300403|TPX2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	589.256037	1176.49752	-0.21513	-0.00012676	1.3648	0.00080424	1.1497	0.00067748	589.255960548911	78.115	0.45786	78.115	77.793	78.251	0	-0.032872	0.00063539	NaN	20.454	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2915600	+		21011	16883	15183	15292							-0.08366867618406104
IFEDRKFAD	9	Unmodified	_IFEDRKFAD_					0	0	0		nc|ENSG00000114491|P11172-2|UMPS;nc|ENSG00000114491|P11172-3|UMPS;ENSG00000114491|ENST00000232607|UMPS;nc|ENSG00000114491|P11172-4|UMPS	nc|ENSG00000114491|P11172-2|UMPS	nc|ENSG00000114491|P11172-2|UMPS	MULTI-SECPEP	A375_MHC_IP_R1	1	380.9716491699219	3	380.860984	1139.56112	0.79726	0.00030365	0.37835	0.0001441	1.1756	0.00044775	380.8610535758626	45.144	0.3546	45.144	44.98	45.334	0					14	6	3	0	0	0	0.77948	1	15854	15854		6.6304	6.6304	1	1091900			21012	3225	15184	15293	20607	20607					-0.003074623906513807
IFEGIQRNYR	10	Unmodified	_IFEGIQRNYR_					0	0	0			REV__ENSG00000239697|ENST00000293825|TNFSF12	REV__ENSG00000239697|ENST00000293825|TNFSF12	MSMS	A375_MHC_IP_R2	2	648.25048828125	2	648.346386	1294.67822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.6	1	126.87	126.37	127.37	0.27503								0	0	0	0.15332	1	49545	49545		10.074	0.6908	1		+		21013	22772	15185	15294	20608	20608					0.04266695548926691
IFEKDCILI	9	Unmodified	_IFEKDCILI_					0	0	0		tr|U7SIZ9|U7SIZ9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02293PE=4SV=1	tr|U7SIZ9|U7SIZ9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02293PE=4SV=1	tr|U7SIZ9|U7SIZ9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02293PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	547.7015380859375	2	547.301736	1092.58892	-0.76383	-0.00041805	0.35065	0.00019191	-0.41319	-0.00022614	547.3017628748723	131.63	0.30408	131.82	131.7	132	0.18953					7	5	2	0	0	0	0.60917	1	51816	51816		13.906	2.2658	1	4087400			21014	29438	15186	15295	20609	20609					0.0463272454521757
IFEKDCILI	9	Unmodified	_IFEKDCILI_					0	0	0		tr|U7SIZ9|U7SIZ9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02293PE=4SV=1	tr|U7SIZ9|U7SIZ9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02293PE=4SV=1	tr|U7SIZ9|U7SIZ9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02293PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	547.301736	1092.58892	-0.77328	-0.00042322	0.019108	1.0458E-05	-0.75417	-0.00041276	547.3016435017419	131.81	0.20236	131.81	131.68	131.88	0	-0.0086311	-0.00016135	NaN	13.906	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3164300			21015	29438	15186	15295							0.0463272454521757
IFELGQVSL	9	Unmodified	_IFELGQVSL_					0	0	0			REV__ENSG00000160447|ENST00000291906|PKN3	REV__ENSG00000160447|ENST00000291906|PKN3	MULTI-SECPEP	A375_MHC_IP_R2	2	503.16644287109375	2	503.2844	1004.55425	-0.77294	-0.00038901	0.8616	0.00043363	0.088663	4.4623E-05	503.2843845132312	65.459	0.91312	66.197	65.562	66.475	0.73811					25	17	2	0	0	0	0.50702	1	24799	24799		25.399	0	1	4912400	+		21016	20171	15187	15296	20610	20610					0.052152247287722275
IFENPFHRI	9	Unmodified	_IFENPFHRI_					0	0	0			REV__nc|ENSG00000078596|O43736-2|ITM2A	REV__nc|ENSG00000078596|O43736-2|ITM2A	MULTI-MSMS	A375_MHC_IP_R1	1	391.9446105957031	3	391.545219	1171.61383	0.15953	6.2465E-05	-1.1471	-0.00044913	-0.98753	-0.00038666	391.544759972855	46.238	0.50334	46.238	45.992	46.495	0					16	9	2	0	0	0	0.50892	1	16197	16197		19.362	1.4988	1	3881000	+		21017	16712	15188	15297	20611	20611					0.03488540462808487
IFENPFHRI	9	Unmodified	_IFENPFHRI_					0	0	0			REV__nc|ENSG00000078596|O43736-2|ITM2A	REV__nc|ENSG00000078596|O43736-2|ITM2A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	391.545219	1171.61383	-0.22928	-8.9774E-05	-1.0257	-0.00040161	-1.255	-0.00049138	391.54480650834546	45.359	0.55569	46.124	45.897	46.453	0.76519	-0.056713	5.0755E-05	NaN	19.362	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5923900	+		21018	16712	15188	15297							0.03488540462808487
IFEQKPKEP	9	Unmodified	_IFEQKPKEP_					0	0	0			REV__nc|ENSG00000091656|Q86UP3|ZFHX4	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-MSMS	A375_MHC_IP_R1	1	558.2201538085938	2	558.308406	1114.60226	-0.70355	-0.0003928	0.43346	0.000242	-0.2701	-0.0001508	558.308592462117	39.567	1.4732	39.567	39.136	40.609	0					73	28	4	0	0	0	0.75032	1	13399	13399		0.45834	0.10771	1	162360000	+		21019	16955	15189	15298	20612	20612					0.04954298648794975
IFEVLGYWAF	10	Unmodified	_IFEVLGYWAF_					0	0	0		nc|ENSG00000120907|P35348-5|ADRA1A;nc|ENSG00000120907|P35348-7|ADRA1A;nc|ENSG00000120907|P35348-6|ADRA1A;nc|ENSG00000120907|P35348-8|ADRA1A;nc|ENSG00000120907|P35348-9|ADRA1A;nc|ENSG00000120907|P35348-3|ADRA1A;nc|ENSG00000120907|P35348-4|ADRA1A;ENSG00000120907|ENST00000380573|ADRA1A;nc|ENSG00000120907|P35348-2|ADRA1A	nc|ENSG00000120907|P35348-5|ADRA1A	nc|ENSG00000120907|P35348-5|ADRA1A	MSMS	A375_MHC_IP_R2	2	415.5952453613281	3	415.549859	1243.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.975	1	38.749	38.249	39.249	0.77451								0	0	0	0.15207	1	13939	13939		8.4443	0	1				21020	3697	15190	15299	20613	20613					0.015677731712230525
IFFFVIWL	8	Unmodified	_IFFFVIWL_					0	0	0		ENST00000548714.5_1_12:57882886-57883085:+|nuORF	ENST00000548714.5_1_12:57882886-57883085:+|nuORF	ENST00000548714.5_1_12:57882886-57883085:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	362.60595703125	3	362.212518	1083.61573	-0.19088	-6.9137E-05	2.1103	0.00076438	1.9194	0.00069524	362.2131273562983	48.67	0.55907	49.427	49.08	49.639	0.75736					19	10	2	0	0	0	0.90851	1	18331	18331		7.9102	3.5809	1	1799500			21021	13353	15191	15300	20614	20614					0.07726201218702045
IFFGKVFLV	9	Unmodified	_IFFGKVFLV_					0	0	0		ENST00000380842.4_1_13:29236592-29238659:+|nuORF	ENST00000380842.4_1_13:29236592-29238659:+|nuORF	ENST00000380842.4_1_13:29236592-29238659:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	535.7255859375	2	535.325871	1068.63719	-0.7736	-0.00041413	0.057213	3.0627E-05	-0.71638	-0.0003835	535.3256500887447	126.06	0.30455	126.35	126.23	126.53	0.2951					6	5	2	0	0	0	0.54799	1	49332	49332		24.021	24.021	1	5029500			21022	11360	15192	15301	20615	20615					0.10561586247399646
IFFGLLVSPE	10	Unmodified	_IFFGLLVSPE_					0	0	0		nc|ENSG00000157800|Q8NCC5-3|SLC37A3;nc|ENSG00000157800|Q8NCC5-2|SLC37A3;ENSG00000157800|ENST00000326232|SLC37A3;ENST00000473707.5_1_7:140051761-140069464:-|nuORF;ENST00000464865.5_1_7:140051761-140082350:-|nuORF	nc|ENSG00000157800|Q8NCC5-3|SLC37A3	nc|ENSG00000157800|Q8NCC5-3|SLC37A3	MSMS	A375_MHC_IP_R2	2	561.2682495117188	2	561.3157	1120.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.476	1	82.219	81.719	82.719	0.74293								0	0	0	0.15308	1	30942	30942		10.824	0.75	1				21023	6267	15193	15302	20616	20616					0.06136370796957635
IFFKAKWKKP	10	Unmodified	_IFFKAKWKKP_					0	0	0		SERPINA9|p.E213K|1|0.82|ENSG00000170054|chr14:94467374-94467374|C/T|missense_variant	SERPINA9|p.E213K|1|0.82|ENSG00000170054|chr14:94467374-94467374|C/T|missense_variant	SERPINA9|p.E213K|1|0.82|ENSG00000170054|chr14:94467374-94467374|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	646.952880859375	2	646.897526	1291.7805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.66	1	119.66	119.16	120.16	0								0	0	0	0.15508	1	44258	44258		4.3292	0.38484	1				21024	29136	15194	15303	20617	20617					0.14628013358492353
IFFRIVQQFNK	11	Unmodified	_IFFRIVQQFNK_					0	0	0			REV__ENST00000489822.5_1_10:121336540-121356247:-|nuORF	REV__ENST00000489822.5_1_10:121336540-121356247:-|nuORF	MSMS	A375_MHC_IP_R1	1	720.3587646484375	2	720.411529	1438.8085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.03	1	109.03	108.53	109.53	0								0	0	0	0.16297	1	39995	39995		3.2813	0	1		+		21025	25377	15195	15304	20618	20618					0.10665291547911693
IFFTWRLY	8	Unmodified	_IFFTWRLY_					0	0	0		ENSG00000124557|ENST00000684113|BTN1A1	ENSG00000124557|ENST00000684113|BTN1A1	ENSG00000124557|ENST00000684113|BTN1A1	MSMS	A375_MHC_IP_R2	2	573.46337890625	2	573.310752	1144.60695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.129	1	52.881	52.381	53.381	0.75225								0	0	0	0.16876	1	19641	19641		10.183	0.10947	1				21026	3911	15196	15305	20619	20619					0.040432275822240626
IFFYNWTLLL	10	Unmodified	_IFFYNWTLLL_					0	0	0			REV__MCTP1|p.L840F|1|0.27|ENSG00000175471|chr5:94799049-94799049|C/G|missense_variant	REV__MCTP1|p.L840F|1|0.27|ENSG00000175471|chr5:94799049-94799049|C/G|missense_variant	MSMS	A375_MHC_IP_R2	2	443.9564208984375	3	443.912908	1328.7169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.578	1	58.327	57.827	58.827	0.74894								0	0	0	0.14998	1	21774	21774		17.863	0	1		+		21027	26996	15197	15306	20620	20620					0.06568608130760367
IFGIALLVGV	10	Unmodified	_IFGIALLVGV_					0	0	0			REV__nc|ENSG00000162493|Q86YL7-5|PDPN	REV__nc|ENSG00000162493|Q86YL7-5|PDPN	MULTI-MSMS	A375_MHC_IP_R2	2	501.6899719238281	2	501.323328	1000.6321	-0.54067	-0.00027105	0.089298	4.4767E-05	-0.45137	-0.00022628	501.32333155235375	104.39	0.40955	105.15	104.95	105.36	0.76308					12	7	2	0	0	0	0.63654	1	39449	39449		18.135	4.6271	1	1115200	+		21028	20259	15198	15307	20621	20621					0.1318128238481222
IFGNTNANP	9	Unmodified	_IFGNTNANP_					0	0	0			REV__ADGRV1|p.N3444Tfs*24|1|0.36|ENSG00000164199|chr5:90728837-90728837|A/-|frameshift_variant	REV__ADGRV1|p.N3444Tfs*24|1|0.36|ENSG00000164199|chr5:90728837-90728837|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	475.6346130371094	2	474.232699	946.450845	-0.47782	-0.0002266	-0.13734	-6.5131E-05	-0.61516	-0.00029173	474.232735351181	61.695	1.842	61.695	61.331	63.173	0					86	35	5	0	0	0	0.46038	1	22344	22344		21.747	2.4897	1	39418000	+		21029	15331	15199	15308	20622	20622					-0.0245226265905103
IFHHVPTGL	9	Unmodified	_IFHHVPTGL_					0	0	0		CEMIP|p.P706L|1|0.9|ENSG00000103888|chr15:80922052-80922052|C/T|missense_variant	CEMIP|p.P706L|1|0.9|ENSG00000103888|chr15:80922052-80922052|C/T|missense_variant	CEMIP|p.P706L|1|0.9|ENSG00000103888|chr15:80922052-80922052|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	511.18463134765625	2	510.784902	1019.55525	-0.35369	-0.00018066	-0.59186	-0.00030231	-0.94555	-0.00048297	510.7848698589496	50.022	0.81841	50.022	49.692	50.51	0					30	15	3	0	0	0	0.60012	1	17722	17722		24.674	10.092	1	4043300			21030	359	15200	15309	20623	20623					0.046254838883328375
IFHMPCIQ	8	Unmodified	_IFHMPCIQ_					0	0	0		nc|ENSG00000170448|Q6ZNB6-2|NFXL1;ENSG00000170448|ENST00000507489|NFXL1	nc|ENSG00000170448|Q6ZNB6-2|NFXL1	nc|ENSG00000170448|Q6ZNB6-2|NFXL1	MULTI-MSMS	A375_MHC_IP_R2	2	495.20013427734375	2	494.740791	987.467029	-0.91668	-0.00045352	-0.38068	-0.00018834	-1.2974	-0.00064186	494.74027043415657	25.945	0.71137	26.604	26.347	27.058	0.65992					18	13	2	0	0	0	0.7758	1	8614	8614		10.183	0.80027	1	3178400			21031	7506	15201	15310	20624	20624					-0.02720596018161814
IFHRKKQRRRK	11	Unmodified	_IFHRKKQRRRK_					0	0	0		ENST00000315596.14_2_13:33347406-33347460:+|nuORF	ENST00000315596.14_2_13:33347406-33347460:+|nuORF	ENST00000315596.14_2_13:33347406-33347460:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	518.7301635742188	3	518.330565	1551.96987	-0.51855	-0.00026878	-0.21005	-0.00010888	-0.72861	-0.00037766	518.3303702059133	148.94	2.1762	148.96	147.63	149.8	0.018707					193	76	4	0	0	0	0.73934	4	57713	57713;57753;57909;57965		0	0	1	1051700			21032	10654	15202	15311	20625;20626;20627;20628	20625					0.21595898424357074
IFIEFALVW	9	Unmodified	_IFIEFALVW_					0	0	0			REV__nc|ENSG00000107331|Q9BZC7|ABCA2	REV__nc|ENSG00000107331|Q9BZC7|ABCA2	MULTI-MSMS	A375_MHC_IP_R2	2	569.3928833007812	2	569.320786	1136.62702	-0.17465	-9.9432E-05	-4.1393	-0.0023566	-4.314	-0.002456	569.3185676774116	85.506	0.76372	86.242	85.677	86.441	0.73601					16	14	2	0	0	0	0.67372	1	32455	32455		9.3474	0	1	920960	+		21033	17482	15203	15312	20629	20629					0.06416978522179306
IFIEGLLCVL	10	Unmodified	_IFIEGLLCVL_					0	0	0		ENST00000376621.7_1_6:30513189-30513468:-|nuORF	ENST00000376621.7_1_6:30513189-30513468:-|nuORF	ENST00000376621.7_1_6:30513189-30513468:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	560.4072875976562	2	560.327753	1118.64095	-0.46343	-0.00025967	0.10721	6.0075E-05	-0.35622	-0.0001996	560.8291935276715	100.36	1.0628	100.36	99.825	100.89	0					40	20	3	0	0	0	0.80715	1	36919	36919		16.942	16.942	1	4903200			21034	11287	15204	15313	20630	20630					0.08637887958980173
IFIFSAFIQVF	11	Unmodified	_IFIFSAFIQVF_					0	0	0		nc|ENSG00000213439|P0C628|OR5AC1	nc|ENSG00000213439|P0C628|OR5AC1	nc|ENSG00000213439|P0C628|OR5AC1	MULTI-MSMS	A375_MHC_IP_R1	1	666.7734375	2	666.373549	1330.73255	-0.80463	-0.00053619	-0.48702	-0.00032454	-1.2917	-0.00086072	666.3730985373531	131.7	2.1785	131.7	131.13	133.3	0					82	42	2	0	0	0	0.7342	1	51144	51144		4.897	0.36815	1	88708000			21035	14895	15205	15314	20631	20631					0.08040894647797359
IFIKYKSKPF	10	Unmodified	_IFIKYKSKPF_					0	0	0		nc|ENSG00000128789|Q969U7-2|PSMG2;ENSG00000128789|ENST00000317615|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	MSMS	A375_MHC_IP_R2	2	636.2501220703125	2	635.881542	1269.74853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.764	1	93.503	93.003	94.003	0.73902								0	0	0	0.15508	1	35273	35273		4.3292	0	1				21036	4163	15206	15315	20632	20632					0.12444600884668944
IFIPGVFFLK	10	Unmodified	_IFIPGVFFLK_					0	0	0		EQTN|p.S14F|1|0.09|ENSG00000120160|chr9:27297015-27297015|G/A|missense_variant	EQTN|p.S14F|1|0.09|ENSG00000120160|chr9:27297015-27297015|G/A|missense_variant	EQTN|p.S14F|1|0.09|ENSG00000120160|chr9:27297015-27297015|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	394.2763977050781	3	394.242477	1179.7056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.609	1	60.356	59.856	60.856	0.74714								0	0	0	0.15539	1	22558	22558		3.3196	0	1				21037	13952	15207	15316	20633	20633					0.12293830827275087
IFITYGLFR	9	Unmodified	_IFITYGLFR_					0	0	0		ENSG00000180745|ENST00000368671|CLRN3	ENSG00000180745|ENST00000368671|CLRN3	ENSG00000180745|ENST00000368671|CLRN3	MULTI-SECPEP	A375_MHC_IP_R2	2	565.7236938476562	2	565.32386	1128.63317	-0.42442	-0.00023993	0.19725	0.00011151	-0.22717	-0.00012842	565.3237887535699	102.12	0.50617	102.88	102.62	103.12	0.76428					21	9	3	0	0	0	0.50702	1	38710	38710		19.257	0	1	1777900			21038	8312	15208	15317	20634	20634					0.0739949675371463
IFKEFEPPE	9	Unmodified	_IFKEFEPPE_					0	0	0			REV__tr|U7T8Q4|U7T8Q4_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00130PE=3SV=1	REV__tr|U7T8Q4|U7T8Q4_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00130PE=3SV=1	MSMS	A375_MHC_IP_R2	2	568.2371215820312	2	568.28714	1134.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.57	1	111.3	110.8	111.8	0.73692								0	0	0	0.1521	1	41705	41705		18.135	6.4947	1		+		21039	28890	15209	15318	20635	20635					-0.0021709647942316224
IFKESLRLTAR	11	Unmodified	_IFKESLRLTAR_					0	0	0			REV__MAN1A2|p.A520Gfs*7|1|0.13|ENSG00000198162|chr1:117499435-117499436|-/GAGC|frameshift_variant	REV__MAN1A2|p.A520Gfs*7|1|0.13|ENSG00000198162|chr1:117499435-117499436|-/GAGC|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	667.8019409179688	2	667.401161	1332.78777	-0.93365	-0.00062312	0.89076	0.00059449	-0.042887	-2.8623E-05	667.4020689829041	144.97	0.96597	144.97	144.51	145.47	0					59	39	3	0	0	0	0.73807	1	55594	55594		1.1933	0	1	843220	+		21040	22348	15210	15319	20636	20636					0.1346870116824448
IFKESLRLTAR	11	Unmodified	_IFKESLRLTAR_					0	0	0			REV__MAN1A2|p.A520Gfs*7|1|0.13|ENSG00000198162|chr1:117499435-117499436|-/GAGC|frameshift_variant	REV__MAN1A2|p.A520Gfs*7|1|0.13|ENSG00000198162|chr1:117499435-117499436|-/GAGC|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	667.401161	1332.78777	-0.93365	-0.00062312	0.89076	0.00059449	-0.042887	-2.8623E-05	667.4020689829041	144.97	0.96597	144.97	144.51	145.47	0	-0.019748	0.00063044	NaN	1.1933	59	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	843220	+		21041	22348	15210	15319							0.1346870116824448
IFKHSRMTF	9	Unmodified	_IFKHSRMTF_					0	0	0		ENST00000534609.5_1_12:10277688-10279386:-|nuORF	ENST00000534609.5_1_12:10277688-10279386:-|nuORF	ENST00000534609.5_1_12:10277688-10279386:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	389.2718200683594	3	389.542821	1165.60663	-0.013065	-5.0895E-06	0.87904	0.00034242	0.86598	0.00033734	389.5431762608833	47.627	1.1176	48.388	47.715	48.833	0.76128					33	21	2	0	0	0	0.77396	1	17951	17951		6.6304	6.6304	1	2594000			21042	13213	15211	15320	20637	20637					0.03045484590711567
IFKKKKLW	8	Unmodified	_IFKKKKLW_					0	0	0			REV__TTK|p.S618F|1|0.39|ENSG00000112742|chr6:80035346-80035346|C/T|missense_variant	REV__TTK|p.S618F|1|0.39|ENSG00000112742|chr6:80035346-80035346|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	546.0346069335938	2	545.860412	1089.70627	-0.72958	-0.00039825	-1.5643	-0.00085388	-2.2939	-0.0012521	546.3609257540265	88.56	0.20258	89.292	89.128	89.331	0.7318					5	3	2	0	0	0	0.972	1	33713	33713		2.8892	2.8892	1	2233100	+		21043	28926	15212	15321	20638	20638					0.16500670266964335
IFKKNFIS	8	Unmodified	_IFKKNFIS_					0	0	0			REV__tr|U7SLA8|U7SLA8_FUSNUUDP-N-acetyl-D-galactosaminedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01952PE=3SV=1	REV__tr|U7SLA8|U7SLA8_FUSNUUDP-N-acetyl-D-galactosaminedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01952PE=3SV=1	MSMS	A375_MHC_IP_R1	1	498.6206970214844	2	498.797478	995.580402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.919	1	57.919	57.419	58.419	0								0	0	0	0.16876	1	20792	20792		13.508	3.3245	1		+		21044	28268	15213	15322	20639	20639					0.08243538690885543
IFKKNLFYY	9	Unmodified	_IFKKNLFYY_					0	0	0		ENST00000495897.2_1_10:75227245-75231333:-|nuORF	ENST00000495897.2_1_10:75227245-75231333:-|nuORF	ENST00000495897.2_1_10:75227245-75231333:-|nuORF	MSMS	A375_MHC_IP_R2	2	618.4521484375	2	618.344792	1234.67503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.504	1	100.27	99.766	100.77	0.76278								0	0	0	0.15486	1	37744	37744		5.2307	0.90143	1				21045	12714	15214	15323	20640	20640					0.06708052442240842
IFKLKRGKE	9	Unmodified	_IFKLKRGKE_					0	0	0		ENSG00000108702|ENST00000225842|CCL1	ENSG00000108702|ENST00000225842|CCL1	ENSG00000108702|ENST00000225842|CCL1	MULTI-SECPEP	A375_MHC_IP_R1	1	374.29718017578125	3	373.572998	1117.69716	-0.12396	-4.6309E-05	0.63472	0.00023712	0.51076	0.00019081	373.57311994174717	29.428	0.30281	29.428	29.201	29.504	0					11	5	3	0	0	0	0.76642	1	9243	9243		12.873	6.6808	1	16478000			21046	2830	15215	15324	20641	20641					0.1430227691064374
IFKQGEAELR	10	Unmodified	_IFKQGEAELR_					0	0	0			REV__ENST00000530460.1_3_11:76092656-76092758:+|nuORF	REV__ENST00000530460.1_3_11:76092656-76092758:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	397.9447021484375	3	397.555784	1189.64552	0.093405	3.7134E-05	-0.33993	-0.00013514	-0.24652	-9.8006E-05	397.55570682579685	46.82	0.55811	47.581	47.361	47.919	0.76128					16	10	3	0	0	0	0.67901	1	17520	17520		14.957	1.3423	1	3043000	+		21047	25838	15216	15325	20642	20642					0.058284884260729086
IFKWCCFD	8	Unmodified	_IFKWCCFD_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-MSMS	A375_MHC_IP_R1	1	531.6904296875	2	531.232799	1060.45104	-0.56904	-0.00030229	0.58662	0.00031163	0.017583	9.3407E-06	531.2329871329931	104.26	0.71277	104.26	103.98	104.69	0					21	13	2	0	0	0	0.75322	1	38323	38323		19.439	19.439	1	2193600			21048	2650	15217	15326	20643	20643					-0.0767630225504945
IFKYLRYF	8	Unmodified	_IFKYLRYF_					0	0	0		ENST00000465531.1_2_15:78276842-78294025:-|nuORF;ENST00000491479.1_1_15:78290504-78294097:-|nuORF;nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;ENSG00000167202|ENST00000300584|TBC1D2B	ENST00000465531.1_2_15:78276842-78294025:-|nuORF	ENST00000465531.1_2_15:78276842-78294025:-|nuORF	MSMS	A375_MHC_IP_R1	1	575.1959228515625	2	575.326402	1148.63825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.618	1	37.618	37.118	38.118	0								0	0	0	0.16876	1	12695	12695		5.7604	1.0044	1				21049	7169	15218	15327	20644	20644					0.06987800616298045
IFKYSLVLV	9	Unmodified	_IFKYSLVLV_					0	0	0			REV__IFNA7|p.S18F|1|0.94|ENSG00000214042|chr9:21202113-21202113|G/A|missense_variant	REV__IFNA7|p.S18F|1|0.94|ENSG00000214042|chr9:21202113-21202113|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	541.235107421875	2	541.336436	1080.65832	-0.4284	-0.00023191	2.1004	0.001137	1.672	0.00090509	541.337584512169	117.51	0.15248	117.51	117.41	117.56	0					4	2	2	0	0	0	0.73363	1	43185	43185		15.847	3.3156	1	990650	+		21050	26776	15219	15328	20645	20645					0.12121551556242594
IFLCHVCSY	9	2 Carbamidomethyl (C)	_IFLC(Carbamidomethyl (C))HVC(Carbamidomethyl (C))SY_	IFLC(1)HVC(1)SY		IFLC(47)HVC(47)SY		0	2	0			REV__ENST00000366784.1_1_1:226895251-226895422:-|nuORF	REV__ENST00000366784.1_1_1:226895251-226895422:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	600.1727294921875	2	599.772819	1197.53109	-0.20353	-0.00012207	-0.52444	-0.00031454	-0.72797	-0.00043661	599.7726349046899	43.244	0.40767	43.244	43.043	43.451	0					12	7	2	0	0	0	0.1209	1	15028	15028		46.921	17.839	1	2493500	+		21051	23937	15220	15329	20646	20646	82;83				-0.05977860651842093
IFLCHVCSY	9	2 Carbamidomethyl (C)	_IFLC(Carbamidomethyl (C))HVC(Carbamidomethyl (C))SY_					0	2	0			REV__ENST00000366784.1_1_1:226895251-226895422:-|nuORF	REV__ENST00000366784.1_1_1:226895251-226895422:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	599.772819	1197.53109	-0.20353	-0.00012207	-0.52444	-0.00031454	-0.72797	-0.00043661	599.7726349046899	43.244	0.40767	43.244	43.043	43.451	0	-0.022733	0.00023656	NaN	46.921	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2493500	+		21052	23937	15220	15329			82;83				-0.05977860651842093
IFLCHVCSY	9	2 Carbamidomethyl (C)	_IFLC(Carbamidomethyl (C))HVC(Carbamidomethyl (C))SY_					0	2	0			REV__ENST00000366784.1_1_1:226895251-226895422:-|nuORF	REV__ENST00000366784.1_1_1:226895251-226895422:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	599.772819	1197.53109	-0.45433	-0.0002725	-0.93248	-0.00055928	-1.3868	-0.00083178	599.7723384357286	42.517	0.45769	43.29	43.065	43.523	0.7724	0.022733	-0.00025291	NaN	46.921	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3774800	+		21053	23937	15220	15329			82;83				-0.05977860651842093
IFLDTAKKH	9	Unmodified	_IFLDTAKKH_					0	0	0		CPED1|p.I920F|1|0.32|ENSG00000106034|chr7:121271320-121271320|A/T|missense_variant	CPED1|p.I920F|1|0.32|ENSG00000106034|chr7:121271320-121271320|A/T|missense_variant	CPED1|p.I920F|1|0.32|ENSG00000106034|chr7:121271320-121271320|A/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	537.3631591796875	2	536.811116	1071.60768	-0.79138	-0.00042482	1.6787	0.00090112	0.88728	0.0004763	536.8114252335366	89.435	0.60567	90.167	89.836	90.442	0.7318					22	11	3	0	0	0	0.41409	1	34026	34026		24.021	3.1494	1	2623800			21054	645	15221	15330	20647	20647					0.07474022231258459
IFLFVFTIL	9	Unmodified	_IFLFVFTIL_					0	0	0		tr|U7SJH4|U7SJH4_FUSNUInnermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02143PE=4SV=1	tr|U7SJH4|U7SJH4_FUSNUInnermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02143PE=4SV=1	tr|U7SJH4|U7SJH4_FUSNUInnermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02143PE=4SV=1	MSMS	A375_MHC_IP_R2	2	371.6274719238281	3	371.563328	1111.66815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.634	1	63.377	62.877	63.877	0.74263								0	0	0	0.15486	1	23741	23741		2.7352	0.23671	1				21055	29452	15222	15331	20648	20648					0.11678739561671136
IFLGRRKRK	9	Unmodified	_IFLGRRKRK_					0	0	0			REV__ENST00000327111.7_1_5:92919409-92919580:+|nuORF	REV__ENST00000327111.7_1_5:92919409-92919580:+|nuORF	MSMS	A375_MHC_IP_R1	1	587.386474609375	2	587.388191	1172.76183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.33	1	121.33	120.83	121.83	0								0	0	0	0.15486	1	45049	45049		0.6015	0	1		+		21056	23607	15223	15332	20649	20649					0.18235896507280813
IFLHAAHQAL	10	Unmodified	_IFLHAAHQAL_					0	0	0			REV__GCLC|p.V371A|1|0.47|ENSG00000001084|chr6:53506998-53506998|A/G|missense_variant	REV__GCLC|p.V371A|1|0.47|ENSG00000001084|chr6:53506998-53506998|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	561.0733642578125	2	560.816733	1119.61891	-0.53584	-0.00030051	-4.1153	-0.0023079	-4.6511	-0.0026084	561.3152002756148	89.428	0.81143	90.16	89.836	90.648	0.7318					19	15	2	0	0	0	0.80715	1	34142	34142		16.942	3.4344	1	2344400	+		21057	26673	15224	15333	20650	20650					0.06388844325419996
IFLIGVRNWFF	11	Unmodified	_IFLIGVRNWFF_					0	0	0			REV__ENST00000392876.7_1_12:104169265-104169487:-|nuORF	REV__ENST00000392876.7_1_12:104169265-104169487:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	705.75439453125	2	706.39789	1410.78123	-0.66772	-0.00047167	0.020196	1.4267E-05	-0.64752	-0.00045741	706.397814281116	132.9	1.0188	133.07	132.48	133.5	0.16487					30	19	2	0	0	0	0.99881	1	52089	52089		3.5965	0	1	3922100	+		21058	24281	15225	15334	20651	20651					0.09226808007542786
IFLIIGKRY	9	Unmodified	_IFLIIGKRY_					0	0	0			REV__ENSG00000122140|ENST00000241600|MRPS2	REV__ENSG00000122140|ENST00000241600|MRPS2	MSMS	A375_MHC_IP_R2	2	561.9183959960938	2	561.855327	1121.6961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.533	1	95.277	94.777	95.777	0.74474								0	0	0	0.15486	1	35923	35923		5.2307	0	1		+		21059	18190	15226	15335	20652	20652					0.14012062541746673
IFLKPPWTTVF	11	Unmodified	_IFLKPPWTTVF_					0	0	0		FCRL5|p.Q28K|1|0.27|ENSG00000143297|chr1:157547168-157547168|G/T|missense_variant	FCRL5|p.Q28K|1|0.27|ENSG00000143297|chr1:157547168-157547168|G/T|missense_variant	FCRL5|p.Q28K|1|0.27|ENSG00000143297|chr1:157547168-157547168|G/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	450.65985107421875	3	450.260308	1347.7591	-0.38567	-0.00017365	0.041784	1.8814E-05	-0.34389	-0.00015484	450.2602104537709	131.73	1.718	131.73	131.13	132.84	0					79	33	4	0	0	0	0.73332	1	50704	50704		2.6312	1.9336	1	15936000			21060	13993	15227	15336	20653	20653					0.09912583539085063
IFLKPPWTTVF	11	Unmodified	_IFLKPPWTTVF_					0	0	0		FCRL5|p.Q28K|1|0.27|ENSG00000143297|chr1:157547168-157547168|G/T|missense_variant	FCRL5|p.Q28K|1|0.27|ENSG00000143297|chr1:157547168-157547168|G/T|missense_variant	FCRL5|p.Q28K|1|0.27|ENSG00000143297|chr1:157547168-157547168|G/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	450.3063659667969	3	450.260308	1347.7591	-0.26814	-0.00012073	0.34736	0.0001564	0.079222	3.5671E-05	450.26023685142246	131.67	1.576	131.86	131.03	132.61	0.18953					77	30	4	0	0	0	0.73332	2	51803	51765;51803		2.6312	2.0044	1	17429000			21061	13993	15227	15336	20654;20655	20655					0.09912583539085063
IFLLLPIDTPQ	11	Unmodified	_IFLLLPIDTPQ_					0	0	0			REV__ENST00000560083.1_1_17:78362921-78367295:+|nuORF	REV__ENST00000560083.1_1_17:78362921-78367295:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	635.71044921875	2	635.376289	1268.73803	-0.75902	-0.00048226	-0.62349	-0.00039615	-1.3825	-0.00087842	635.375798356832	131.74	1.0672	131.93	131.7	132.76	0.18954					31	20	2	0	0	0	0.99606	1	52008	52008		6.2058	0	1	7219800	+		21062	26161	15228	15337	20656	20656					0.1144057343960867
IFLLLPIDTPQ	11	Unmodified	_IFLLLPIDTPQ_					0	0	0			REV__ENST00000560083.1_1_17:78362921-78367295:+|nuORF	REV__ENST00000560083.1_1_17:78362921-78367295:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	635.376289	1268.73803	-0.91217	-0.00057957	-0.87092	-0.00055336	-1.7831	-0.0011329	635.3757812733273	131.93	0.70494	131.93	131.58	132.28	0	-0.0015252	-0.00022545	NaN	1.3295	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6983900	+		21063	26161	15228	15337							0.1144057343960867
IFLNIFWTLSY	11	Unmodified	_IFLNIFWTLSY_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MSMS	A375_MHC_IP_R2	2	709.0350341796875	2	708.881739	1415.74892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.002	1	78.745	78.245	79.245	0.74293								0	0	0	0.16191	1	29622	29622		8.7454	3.4485	1		+		21064	18059	15229	15338	20657	20657					0.05767975813910198
IFLNTKHTV	9	Unmodified	_IFLNTKHTV_					0	0	0		ENST00000587313.1_1_18:12913471-12913552:+|nuORF	ENST00000587313.1_1_18:12913471-12913552:+|nuORF	ENST00000587313.1_1_18:12913471-12913552:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	537.2113037109375	2	536.811116	1071.60768	-0.85587	-0.00045944	1.4114	0.00075767	0.55555	0.00029823	536.8116607434017	90.21	0.6076	90.21	89.88	90.488	0					17	11	2	0	0	0	0.59098	1	33162	33162		21.537	21.537	1	2652800			21065	13743	15230	15339	20658	20658					0.07474022231258459
IFLNTKHTV	9	Unmodified	_IFLNTKHTV_					0	0	0		ENST00000587313.1_1_18:12913471-12913552:+|nuORF	ENST00000587313.1_1_18:12913471-12913552:+|nuORF	ENST00000587313.1_1_18:12913471-12913552:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	536.8765869140625	2	536.811116	1071.60768	-0.79138	-0.00042482	1.6787	0.00090112	0.88728	0.0004763	536.8114252335366	89.435	0.60567	90.167	89.836	90.442	0.7318					22	11	3	0	0	0	0.67332	1	34121	34121		9.3831	0	1	2623800			21066	13743	15230	15339	20659	20659					0.07474022231258459
IFLNYTVAGSS	11	Unmodified	_IFLNYTVAGSS_					0	0	0		ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000137860|ENST00000347644|SLC28A2	MULTI-MSMS	A375_MHC_IP_R1	1	586.7017211914062	2	586.303321	1170.59209	-0.058011	-3.4012E-05	-0.76182	-0.00044666	-0.81983	-0.00048067	586.3026781848421	127.95	0.75914	127.95	127.62	128.38	0					25	14	3	0	0	0	0.72851	1	49129	49129		13.042	0	1	20576000			21067	4931	15231	15340	20660	20660					0.013616909235679486
IFLRRADTRRW	11	Unmodified	_IFLRRADTRRW_					0	0	0		nc|ENSG00000169446|Q8N4V1-2|MMGT1	nc|ENSG00000169446|Q8N4V1-2|MMGT1	nc|ENSG00000169446|Q8N4V1-2|MMGT1	MULTI-SECPEP	A375_MHC_IP_R2	2	373.600830078125	4	373.217926	1488.8426	0.4723	0.00017627	-1.1743	-0.00043827	-0.70199	-0.000262	373.46804205614615	27.343	0.66291	28.021	27.638	28.301	0.67857					15	12	2	0	0	0	1.0012	1	9443	9443		1.1098	0.6038	1	2083200			21068	14758	15232	15341	20661	20661					0.11773132759526561
IFLSMCYNIY	10	Unmodified	_IFLSMCYNIY_					0	0	0		ENSG00000174804|ENST00000531380|FZD4	ENSG00000174804|ENST00000531380|FZD4	ENSG00000174804|ENST00000531380|FZD4	MULTI-MSMS	A375_MHC_IP_R2	2	423.2676696777344	3	422.868094	1265.58245	-0.52494	-0.00022198	-0.69229	-0.00029275	-1.2172	-0.00051473	422.86790945454925	59.495	0.50492	60.242	59.996	60.501	0.74714					22	9	3	0	0	0	0.70329	1	22526	22526		6.1918	6.1918	1	1878600			21069	7904	15233	15342	20662	20662					-0.039715366778182215
IFLTITPFW	9	Unmodified	_IFLTITPFW_					0	0	0		ENSG00000109182|ENST00000226432|CWH43	ENSG00000109182|ENST00000226432|CWH43	ENSG00000109182|ENST00000226432|CWH43	MULTI-SECPEP	A375_MHC_IP_R2	2	568.72119140625	2	569.320786	1136.62702	-0.17465	-9.9432E-05	-4.1393	-0.0023566	-4.314	-0.002456	569.3185676774116	85.506	0.76372	86.242	85.677	86.441	0.73601					16	14	2	0	0	0	0.69504	1	32356	32356		18.135	11.929	1	920960			21070	2861	15234	15343	20663	20663					0.06416978522179306
IFLYKEQFWSC	11	Unmodified	_IFLYKEQFWSC_					0	0	0			REV__ENST00000217173.6_1_20:3089740-3090079:-|nuORF	REV__ENST00000217173.6_1_20:3089740-3090079:-|nuORF	MSMS	A375_MHC_IP_R1	1	488.4691467285156	3	488.572446	1462.69551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.677	1	46.677	46.177	47.177	0								0	0	0	0.16334	1	16391	16391		1.3296	0	1		+		21071	23039	15235	15344	20664	20664					-0.01733144960280697
IFMLQERLL	9	Unmodified	_IFMLQERLL_					0	0	0			REV__ENST00000368654.7_1_10:129914037-129921160:-|nuORF	REV__ENST00000368654.7_1_10:129914037-129921160:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	388.9315490722656	3	388.22661	1161.658	-0.30335	-0.00011777	0.86961	0.00033761	0.56626	0.00021984	388.22665789922223	33.114	0.76266	33.866	33.332	34.095	0.75225					34	14	3	0	0	0	0.65721	1	11714	11714		7.1017	2.0542	1	9306200	+		21072	23998	15236	15345	20665	20665					0.08363808564786268
IFPGLSSELI	10	Unmodified	_IFPGLSSELI_					0	0	0			REV__ENSG00000031081|ENST00000264245|ARHGAP31	REV__ENSG00000031081|ENST00000264245|ARHGAP31	MULTI-SECPEP	A375_MHC_IP_R2	2	538.9307250976562	2	538.305332	1074.59611	-0.85822	-0.00046199	0.52772	0.00028408	-0.3305	-0.00017791	538.305417756308	102.89	0.91599	103.65	103.02	103.94	0.76428					30	17	3	0	0	0	0.78945	1	38919	38919		25.399	10.818	1	1292000	+		21073	16300	15237	15346	20666	20666					0.06179780417301117
IFPKKHLEY	9	Unmodified	_IFPKKHLEY_					0	0	0		ENST00000409843.5_1_2:189459510-189459687:+|nuORF	ENST00000409843.5_1_2:189459510-189459687:+|nuORF	ENST00000409843.5_1_2:189459510-189459687:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	587.1478881835938	2	587.834591	1173.65463	-0.87291	-0.00051313	-3.3293	-0.0019571	-4.2022	-0.0024702	587.8322138603547	71.648	0.50734	72.382	72.111	72.618	0.73421					15	9	2	0	0	0	0.77834	1	27248	27248		4.756	2.9118	1	1101600			21074	11641	15238	15347	20667	20667					0.07474881782400189
IFPNLAPTV	9	Unmodified	_IFPNLAPTV_					0	0	0			REV__ENSG00000172150|ENST00000381951|OR1A2	REV__ENSG00000172150|ENST00000381951|OR1A2	MULTI-MSMS	A375_MHC_IP_R1	1	487.6374816894531	2	486.28166	970.548768	-0.2772	-0.0001348	0.036602	1.7799E-05	-0.2406	-0.000117	486.28160952343217	91.616	1.9244	91.616	90.896	92.821	0					92	37	4	0	0	0	0.4867	1	33624	33624		20.454	0	1	14867000	+		21075	21124	15239	15348	20668	20668					0.062315459369415294
IFPPVKVI	8	Unmodified	_IFPPVKVI_					0	0	0			REV__DSCAM|p.T592I|1|0.07|ENSG00000171587|chr21:40338109-40338109|G/A|missense_variant	REV__DSCAM|p.T592I|1|0.07|ENSG00000171587|chr21:40338109-40338109|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	456.69793701171875	2	456.799489	911.584425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.9	1	143.92	143.42	144.42	0.024414								0	0	0	0.16876	1	56224	56224		0.69038	0	1		+		21076	16039	15240	15349	20669	20669					0.1250962818461403
IFQAAEKLGE	10	Unmodified	_IFQAAEKLGE_					0	0	0		ENSG00000182481|ENST00000330459|KPNA2;ENST00000578492.5_1_17:62746826-62750158:-|nuORF	ENSG00000182481|ENST00000330459|KPNA2	ENSG00000182481|ENST00000330459|KPNA2	MULTI-SECPEP	A375_MHC_IP_R1	1	553.6974487304688	2	553.298039	1104.58152	-0.25364	-0.00014034	0.16238	8.9847E-05	-0.091258	-5.0493E-05	553.2979566759143	45.466	0.60552	45.466	45.183	45.789	0					28	11	3	0	0	0	0.47386	1	15872	15872		47.749	1.7277	1	5306200			21077	8410	15241	15350	20670	20670					0.03341708269135779
IFQKLRELY	9	Unmodified	_IFQKLRELY_					0	0	0			REV__nc|ENSG00000136379|Q6PCB6-2|ABHD17C	REV__nc|ENSG00000136379|Q6PCB6-2|ABHD17C	MULTI-SECPEP	A375_MHC_IP_R1	1	404.30462646484375	3	403.904524	1208.69174	-0.40506	-0.00016361	0.34547	0.00013954	-0.059586	-2.4067E-05	403.90468626734065	63.471	0.66456	63.471	63.274	63.939	0					24	12	3	0	0	0	0.67539	1	22959	22959		21.537	1.911	1	3710000	+		21078	18933	15242	15351	20671	20671					0.09574553328184265
IFQKRKKRKTK	11	Unmodified	_IFQKRKKRKTK_					0	0	0		ENST00000415149.6_1_3:107429416-107435478:+|nuORF	ENST00000415149.6_1_3:107429416-107435478:+|nuORF	ENST00000415149.6_1_3:107429416-107435478:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	731.6567993164062	2	730.980444	1459.94634	-0.77311	-0.00056513	-1.1888	-0.00086897	-1.9619	-0.0014341	730.9781816689269	125.18	0.25416	125.47	125.27	125.52	0.2951					5	4	2	0	0	0	0.99921	1	48728	48728		1.3295	0	1	27932000			21079	11675	15243	15352	20672	20672					0.23476039867182408
IFQNYTSCEVY	11	Unmodified	_IFQNYTSCEVY_					0	0	0		HYDIN|p.P112S|1|0.49|ENSG00000157423|chr16:71178975-71178975|G/A|missense_variant	HYDIN|p.P112S|1|0.49|ENSG00000157423|chr16:71178975-71178975|G/A|missense_variant	HYDIN|p.P112S|1|0.49|ENSG00000157423|chr16:71178975-71178975|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	684.20068359375	2	683.802828	1365.5911	-0.70156	-0.00047973	-2.0206	-0.0013817	-2.7221	-0.0018614	683.8007857408111	74.553	0.61167	75.29	74.958	75.57	0.73752					21	11	3	0	0	0	0.99676	1	28288	28288		2.9952	1.9238	1	2735500			21080	14142	15244	15353	20673	20673					-0.077068915076552
IFQPKEEEEE	10	Unmodified	_IFQPKEEEEE_					0	0	0		ENST00000460982.1_1_13:36423263-36423401:-|nuORF	ENST00000460982.1_1_13:36423263-36423401:-|nuORF	ENST00000460982.1_1_13:36423263-36423401:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	426.9344482421875	3	426.534714	1276.58231	-0.38306	-0.00016339	-0.54961	-0.00023443	-0.93268	-0.00039782	426.53461575340197	66.01	0.5088	66.748	66.375	66.884	0.73812					19	9	3	0	0	0	0.72006	1	25016	25016		3.3196	0	1	1956000			21081	12179	15245	15354	20674	20674					-0.04491541872494054
IFQRNQTSL	9	Unmodified	_IFQRNQTSL_					0	0	0		ENST00000586256.1_1_16:4784633-4796526:+|nuORF;ENSG00000166246|ENST00000299320|DNAAF8	ENST00000586256.1_1_16:4784633-4796526:+|nuORF	ENST00000586256.1_1_16:4784633-4796526:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	553.7159423828125	2	553.80128	1105.58801	-0.041187	-2.2809E-05	1.0153	0.00056228	0.97412	0.00053947	553.8010870215875	49.05	0.60704	49.05	48.78	49.387	0					33	11	4	0	0	0	0.4261	1	17286	17286		37.974	10.345	1	12872000			21082	7046	15246	15355	20675	20675					0.03943646220523078
IFQRQKRRKFW	11	Unmodified	_IFQRQKRRKFW_					0	0	0		ENSG00000134962|ENST00000257408|KLB	ENSG00000134962|ENST00000257408|KLB	ENSG00000134962|ENST00000257408|KLB	MULTI-SECPEP	A375_MHC_IP_R1	1	399.7471923828125	4	398.987572	1591.92118	-0.082827	-3.3047E-05	0.96917	0.00038669	0.88634	0.00035364	399.2383336018064	56.297	0.45611	56.297	56.092	56.548	0					11	8	2	0	0	0	1.0015	1	20123	20123		0	0	1	1015100			21083	4630	15247	15356	20676	20676					0.148899850646103
IFRGEYSY	8	Unmodified	_IFRGEYSY_					0	0	0			REV__nc|ENSG00000068885|Q9P2H3-2|IFT80	REV__nc|ENSG00000068885|Q9P2H3-2|IFT80	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1502685546875	2	517.750724	1033.4869	-0.73502	-0.00038056	-0.098887	-5.1199E-05	-0.83391	-0.00043176	517.750544707053	67.342	0.60938	68.078	67.75	68.359	0.73631					22	11	3	0	0	0	0.86263	1	25502	25502		26.884	7.6267	1	2850800	+		21084	16549	15248	15357	20677	20677					-0.028508054821941187
IFRGMQIQ	8	Unmodified	_IFRGMQIQ_					0	0	0			REV__nc|ENSG00000136051|Q2M389-2|WASHC4	REV__nc|ENSG00000136051|Q2M389-2|WASHC4	MULTI-SECPEP	A375_MHC_IP_R1	1	496.3585205078125	2	496.770937	991.527321	-0.62271	-0.00030935	-1.0126	-0.00050303	-1.6353	-0.00081238	496.7702471788577	131.94	0.20166	131.94	131.78	131.98	0					5	3	2	0	0	0	0.972	1	50856	50856		0.6015	0	1	2762900	+		21085	18913	15249	15358	20678	20678					0.03121837636570035
IFRHYRIL	8	Unmodified	_IFRHYRIL_					0	0	0			REV__CDS1|p.S187L|1|0.41|ENSG00000163624|chr4:84619513-84619513|C/T|missense_variant	REV__CDS1|p.S187L|1|0.41|ENSG00000163624|chr4:84619513-84619513|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	559.7344970703125	2	559.335093	1116.65563	-0.17798	-9.955E-05	-0.8947	-0.00050043	-1.0727	-0.00059999	559.3348464614737	127.6	0.20238	127.6	127.47	127.67	0					5	3	2	0	0	0	0.7479	1	48967	48967		20.871	2.7362	1	6331700	+		21086	15628	15250	15359	20679	20679					0.10197140941977523
IFRIIHKFWKW	11	Unmodified	_IFRIIHKFWKW_					0	0	0			REV__ENST00000409175.5_1_2:160599702-160602296:+|nuORF	REV__ENST00000409175.5_1_2:160599702-160602296:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	787.8607177734375	2	787.461356	1572.90816	-0.86918	-0.00068444	0.039851	3.1381E-05	-0.82933	-0.00065306	787.4611924468818	134.84	2.1394	134.98	134.6	136.74	0.13901					134	41	5	0	0	0	0.73924	1	53033	53033		0	0	1	81769000	+		21087	24462	15251	15360	20680	20680					0.14462153952536028
IFRQWFGV	8	Unmodified	_IFRQWFGV_					0	0	0			REV__LRRK1|p.I1366Nfs*21|1|0.31|ENSG00000154237|chr15:101054981-101054982|-/A|frameshift_variant	REV__LRRK1|p.I1366Nfs*21|1|0.31|ENSG00000154237|chr15:101054981-101054982|-/A|frameshift_variant	MSMS	A375_MHC_IP_R1	1	526.6773071289062	2	526.787444	1051.56034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.875	1	98.875	98.375	99.375	0								0	0	0	0.16876	1	36325	36325		10.183	0.83596	1		+		21088	19871	15252	15361	20681	20681					0.03661787750934309
IFRRFRYRIRK	11	Unmodified	_IFRRFRYRIRK_					0	0	0			REV__JAK2|p.E577Sfs*8|1|0.71|ENSG00000096968|chr9:5072578-5072579|AG/-|frameshift_variant	REV__JAK2|p.E577Sfs*8|1|0.71|ENSG00000096968|chr9:5072578-5072579|AG/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	805.9949340820312	2	805.99696	1609.97937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.79	1	131	130.5	131.5	0.2142								0	0	0	0.1635	1	51442	51442		1.4819	1.1313	1		+		21089	17009	15253	15362	20682	20682					0.1987766670988549
IFSAVFHTFI	10	Unmodified	_IFSAVFHTFI_					0	0	0			REV__ENST00000570310.5_1_17:79682952-79684780:+|nuORF	REV__ENST00000570310.5_1_17:79682952-79684780:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	591.9524536132812	2	591.321317	1180.62808	-0.43785	-0.00025891	1.8565	0.0010978	1.4186	0.00083887	591.3212958289681	86.943	0.50739	87.676	87.255	87.762	0.733					12	9	2	0	0	0	0.55789	1	33017	33017		24.021	0.23079	1	1538200	+		21090	21730	15254	15363	20683	20683					0.044991928910803836
IFSEMYSCPSS	11	Unmodified	_IFSEMYSCPSS_					0	0	0			REV__ENST00000551005.5_1_12:50537518-50537860:-|nuORF	REV__ENST00000551005.5_1_12:50537518-50537860:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	626.0303955078125	2	625.757032	1249.49951	-0.86743	-0.0005428	0.13396	8.3828E-05	-0.73347	-0.00045897	625.757132964758	81.663	0.50592	82.406	82.128	82.634	0.74293					14	9	2	0	0	0	0.73283	1	30906	30906		6.2058	2.2614	1	2369700	+		21091	26040	15255	15364	20684	20684					-0.11525898196487105
IFSGPLSIEL	10	Unmodified	_IFSGPLSIEL_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	A375_MHC_IP_R2	2	538.7048950195312	2	538.305332	1074.59611	-0.85822	-0.00046199	0.52772	0.00028408	-0.3305	-0.00017791	538.305417756308	102.89	0.91599	103.65	103.02	103.94	0.76428					30	17	3	0	0	0	0.60556	1	38955	38955		20.454	1.1966	1	1292000	+		21092	19347	15256	15365	20685	20685					0.06179780417301117
IFSIREVSF	9	Unmodified	_IFSIREVSF_					0	0	0		ENSG00000108561|ENST00000225698|C1QBP	ENSG00000108561|ENST00000225698|C1QBP	ENSG00000108561|ENST00000225698|C1QBP	MULTI-MSMS	A375_MHC_IP_R1	1	549.7030029296875	2	549.303124	1096.5917	-0.55095	-0.00030264	0.89922	0.00049395	0.34828	0.00019131	549.3036491410893	99.504	1.1631	99.504	98.964	100.13	0					51	22	3	0	0	0	0.034721	1	36631	36631		86.332	10.571	1	13640000			21093	2815	15257	15366	20686	20686					0.04726315994366814
IFSIREVSF	9	Unmodified	_IFSIREVSF_					0	0	0		ENSG00000108561|ENST00000225698|C1QBP	ENSG00000108561|ENST00000225698|C1QBP	ENSG00000108561|ENST00000225698|C1QBP	MULTI-MSMS	A375_MHC_IP_R2	2	549.702392578125	2	549.303124	1096.5917	-0.72147	-0.00039631	1.3959	0.00076677	0.67443	0.00037047	549.3039079790341	98.72	1.0648	99.479	98.793	99.858	0.75977					43	20	3	0	0	0	0.030222	1	37506	37506		90.135	23.678	1	10993000			21094	2815	15257	15366	20687	20687					0.04726315994366814
IFSQKPEF	8	Unmodified	_IFSQKPEF_					0	0	0		ENSG00000164292|ENST00000379982|RHOBTB3;RHOBTB3|p.D571N|1|0.18|ENSG00000164292|chr5:95788849-95788849|G/A|missense_variant	ENSG00000164292|ENST00000379982|RHOBTB3	ENSG00000164292|ENST00000379982|RHOBTB3	MULTI-SECPEP	A375_MHC_IP_R1	1	498.6627197265625	2	498.263468	994.512382	-0.51154	-0.00025488	-0.42923	-0.00021387	-0.94077	-0.00046875	498.26330817378437	52.732	0.45658	52.732	52.49	52.946	0					17	8	3	0	0	0	0.4193	1	18757	18757		49.933	6.0747	1	2585600			21095	6813	15258	15367	20688	20688					0.014906690402312961
IFSQKPEF	8	Unmodified	_IFSQKPEF_					0	0	0		ENSG00000164292|ENST00000379982|RHOBTB3;RHOBTB3|p.D571N|1|0.18|ENSG00000164292|chr5:95788849-95788849|G/A|missense_variant	ENSG00000164292|ENST00000379982|RHOBTB3	ENSG00000164292|ENST00000379982|RHOBTB3	MULTI-MSMS	A375_MHC_IP_R2	2	498.66302490234375	2	498.263468	994.512382	-0.83267	-0.00041489	-0.40373	-0.00020116	-1.2364	-0.00061606	498.26333247819804	51.951	0.45901	52.703	52.423	52.882	0.75225					14	8	2	0	0	0	0.7011	1	19596	19596		34.402	5.3201	1	2998700			21096	6813	15258	15367	20689	20689					0.014906690402312961
IFSSALAA	8	Unmodified	_IFSSALAA_					0	0	0		GPRC5A|p.L245F|1|0.47|ENSG00000013588|chr12:12908982-12908982|C/T|missense_variant	GPRC5A|p.L245F|1|0.47|ENSG00000013588|chr12:12908982-12908982|C/T|missense_variant	GPRC5A|p.L245F|1|0.47|ENSG00000013588|chr12:12908982-12908982|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	390.6173400878906	2	390.218529	778.422505	0.2051	8.0034E-05	-0.48751	-0.00019024	-0.28241	-0.0001102	390.21719007930784	100.83	2.2292	100.83	99.975	102.2	0					113	43	4	0	0	0	0.7779	1	37238	37238		2.5775	0	1	5176200			21097	14073	15259	15368	20690	20690					0.024430394316595994
IFSTDDFFF	9	Unmodified	_IFSTDDFFF_					0	0	0		ENSG00000139597|ENST00000380130|N4BP2L1;ENST00000472298.1_1_13:32981593-33002081:-|nuORF;nc|ENSG00000139597|Q5TBK1-2|N4BP2L1	ENSG00000139597|ENST00000380130|N4BP2L1	ENSG00000139597|ENST00000380130|N4BP2L1	MSMS	A375_MHC_IP_R2	2	569.7017211914062	2	569.758215	1137.50188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.698	1	61.443	60.943	61.943	0.74503								0	0	0	0.15486	1	22987	22987		12.532	1.7076	1				21098	5088	15260	15369	20691	20691					-0.06137358404862425
IFSTRTEP	8	Unmodified	_IFSTRTEP_					0	0	0			REV__MUC16|p.T11432R|1|0.08|ENSG00000181143|chr19:8936660-8936660|G/C|missense_variant	REV__MUC16|p.T11432R|1|0.08|ENSG00000181143|chr19:8936660-8936660|G/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	476.3607177734375	2	475.750724	949.486896	-0.39182	-0.00018641	-0.66449	-0.00031613	-1.0563	-0.00050254	475.75061984048835	85.176	0.45968	85.912	85.574	86.034	0.73601					13	8	2	0	0	0	0.91495	1	32286	32286		18.135	5.6034	1	1066800	+		21099	27053	15261	15370	20692	20692					0.010131945177931811
IFSYHVPTV	9	Unmodified	_IFSYHVPTV_					0	0	0		MC2R|p.H170Y|1|0.51|ENSG00000185231|chr18:13885011-13885011|G/A|missense_variant	MC2R|p.H170Y|1|0.51|ENSG00000185231|chr18:13885011-13885011|G/A|missense_variant	MC2R|p.H170Y|1|0.51|ENSG00000185231|chr18:13885011-13885011|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	532.1835327148438	2	531.784567	1061.55458	-0.61496	-0.00032703	-0.81737	-0.00043466	-1.4323	-0.00076169	531.784164428241	74	0.5573	74	73.69	74.247	0					16	10	2	0	0	0	0.43707	1	26987	26987		15.847	0	1	1972900			21100	14358	15262	15371	20693	20693					0.026266444486054752
IFSYYNSK	8	Unmodified	_IFSYYNSK_					0	0	0			REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	511.0340576171875	2	511.2531	1020.49165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.41	1	145.43	144.93	145.93	0.021408								0	0	0	0.16876	1	56772	56772		2.0598	0	1		+		21101	15465	15263	15372	20694	20694					-0.017779213394419457
IFTKTLNEY	9	Unmodified	_IFTKTLNEY_					0	0	0			REV__tr|U7SFY6|U7SFY6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02283PE=4SV=1	REV__tr|U7SFY6|U7SFY6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02283PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	565.2000732421875	2	564.800414	1127.58628	-0.50758	-0.00028668	-0.33476	-0.00018907	-0.84234	-0.00047576	564.8001393571508	70.764	0.55656	71.498	71.149	71.706	0.73421					18	10	3	0	0	0	0.13064	1	26823	26823		56.177	0	1	11338000	+		21102	28176	15264	15373	20695	20695					0.027585924119193805
IFVIIALVLKL	11	Unmodified	_IFVIIALVLKL_					0	0	0			REV__SCN5A|p.T843K|1|0.52|ENSG00000183873|chr3:38585950-38585950|G/T|missense_variant	REV__SCN5A|p.T843K|1|0.52|ENSG00000183873|chr3:38585950-38585950|G/T|missense_variant	MSMS	A375_MHC_IP_R1	1	621.4788818359375	2	621.43341	1240.85227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.383	1	75.383	74.883	75.883	0								0	0	0	0.16331	1	27464	27464		1.4819	0	1		+		21103	27922	15265	15374	20696	20696					0.24147507992347528
IFVMFLLV	8	Unmodified	_IFVMFLLV_					0	0	0			REV__tr|U7STU7|U7STU7_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01575PE=4SV=1	REV__tr|U7STU7|U7STU7_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01575PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	491.69683837890625	2	491.295725	980.576897	-0.34168	-0.00016787	4.0385	0.0019841	3.6968	0.0018162	491.2984324481751	145.34	0.1749	145.36	145.32	145.49	0.021408					23	17	2	0	0	0	0.77781	1	56750	56750		2.8892	0	1	142860	+		21104	28508	15266	15375	20697	20697					0.08583152592689203
IFWCGRED	8	Unmodified	_IFWCGRED_					0	0	0		ENST00000328923.7_1_12:57628150-57628297:+|nuORF	ENST00000328923.7_1_12:57628150-57628297:+|nuORF	ENST00000328923.7_1_12:57628150-57628297:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	512.6243896484375	2	513.229102	1024.44365	-0.76571	-0.00039299	-3.0352	-0.0015578	-3.801	-0.0019508	513.7278684120776	67.292	0.55792	68.028	67.75	68.308	0.73631					9	7	2	0	0	0	0.77624	1	25581	25581		8.5933	0	1	1288500			21105	10754	15267	15376	20698	20698					-0.06759318531123881
IFWKMKNIM	9	Unmodified	_IFWKMKNIM_					0	0	0		ENST00000251775.8_1_3:125179648-125188319:-|nuORF	ENST00000251775.8_1_3:125179648-125188319:-|nuORF	ENST00000251775.8_1_3:125179648-125188319:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	606.22705078125	2	605.827398	1209.64024	-0.42274	-0.00025611	-0.2835	-0.00017175	-0.70624	-0.00042786	605.8271199951238	87.16	0.5585	87.16	86.933	87.491	0					22	10	3	0	0	0	0.73008	1	32006	32006		24.674	24.674	1	1908000			21106	10205	15268	15377	20699	20699					0.04380770038255832
IFWKMKNIM	9	Unmodified	_IFWKMKNIM_					0	0	0		ENST00000251775.8_1_3:125179648-125188319:-|nuORF	ENST00000251775.8_1_3:125179648-125188319:-|nuORF	ENST00000251775.8_1_3:125179648-125188319:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	605.827398	1209.64024	-0.27562	-0.00016698	0.30064	0.00018214	0.025023	1.516E-05	605.8273310061845	86.318	0.86623	87.051	86.896	87.762	0.733	-0.054581	0.00047071	NaN	24.674	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1374000			21107	10205	15268	15377							0.04380770038255832
IFWWGEDPSF	10	Unmodified	_IFWWGEDPSF_					0	0	0		ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MSMS	A375_MHC_IP_R1	1	642.2056274414062	2	642.290214	1282.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.015	1	76.015	75.515	76.515	0								0	0	0	0.15398	1	27701	27701		7.9102	1.187	1				21108	2808	15269	15378	20700	20700					-0.064105782479146
IFYDWISLEP	10	Unmodified	_IFYDWISLEP_					0	0	0			REV__nc|ENSG00000172869|Q9Y485|DMXL1	REV__nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-SECPEP	A375_MHC_IP_R2	2	427.777587890625	3	428.216657	1281.62814	-0.49499	-0.00021196	-0.67163	-0.0002876	-1.1666	-0.00049956	428.21643830809967	19.713	0.91126	20.323	19.841	20.752	0.61029					41	17	3	0	0	0	0.87163	1	6229	6229		12.175	7.7686	1	12314000	+		21109	21176	15270	15379	20701	20701					-0.0014085189959587296
IFYFRIFIFIF	11	Unmodified	_IFYFRIFIFIF_					0	0	0		nc|nan|O96002|CXorf1	nc|nan|O96002|CXorf1	nc|nan|O96002|CXorf1	MULTI-MSMS	A375_MHC_IP_R1	1	509.6904602050781	3	509.29172	1524.85333	-0.67337	-0.00034294	-1.5938	-0.00081173	-2.2672	-0.0011547	509.2904953915765	132.74	0.76498	132.74	132.23	133	0					20	14	3	0	0	0	0.73897	1	51187	51187		0.094841	0.011491	1	2712300			21110	14976	15271	15380	20702	20702					0.11189722361245913
IFYFRIFIFIF	11	Unmodified	_IFYFRIFIFIF_					0	0	0		nc|nan|O96002|CXorf1	nc|nan|O96002|CXorf1	nc|nan|O96002|CXorf1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	509.29172	1524.85333	-0.67337	-0.00034294	-1.5938	-0.00081173	-2.2672	-0.0011547	509.2904953915765	132.74	0.76498	132.74	132.23	133	0	0.0077842	0.0017437	NaN	0.094841	20	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2712300			21111	14976	15271	15380							0.11189722361245913
IFYFRIFIFIF	11	Unmodified	_IFYFRIFIFIF_					0	0	0		nc|nan|O96002|CXorf1	nc|nan|O96002|CXorf1	nc|nan|O96002|CXorf1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	509.29172	1524.85333	-0.69454	-0.00035372	-3.0019	-0.0015288	-3.6964	-0.0018825	509.2901732714148	132.54	0.51076	132.73	132.46	132.97	0.18953	-0.0077842	-0.00040758	NaN	0.094841	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2308000			21112	14976	15271	15380							0.11189722361245913
IFYTLFYLLR	10	Unmodified	_IFYTLFYLLR_					0	0	0			REV__nc|ENSG00000217128|Q8TF40-3|FNIP1	REV__nc|ENSG00000217128|Q8TF40-3|FNIP1	MULTI-SECPEP	A375_MHC_IP_R2	2	675.2855834960938	2	674.886824	1347.7591	-0.67658	-0.00045662	0.26362	0.00017792	-0.41296	-0.0002787	674.8865921223863	131.56	1.8825	131.75	130.93	132.82	0.18954					98	36	4	0	0	0	0.94421	1	51884	51884		3.9444	0.66309	1	35750000	+		21113	22681	15272	15381	20703	20703					0.09912583539130537
IGAAAAQKFG	10	Unmodified	_IGAAAAQKFG_					0	0	0			REV__ENSG00000078237|ENST00000179259|TIGAR	REV__ENSG00000078237|ENST00000179259|TIGAR	MULTI-SECPEP	A375_MHC_IP_R1	1	467.6614074707031	2	467.261259	932.507966	-0.28357	-0.0001325	0.29901	0.00013972	0.015439	7.214E-06	467.2614412902697	55.304	0.45583	55.304	54.975	55.431	0					13	8	2	0	0	0	0.85226	1	19810	19810		6.2058	0	1	2342900	+		21114	16707	15273	15382	20704	20704					0.039012046173297676
IGAAAQQSLG	10	Unmodified	_IGAAAQQSLG_					0	0	0		ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3;nc|ENSG00000108465|Q96JB5-2|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	MSMS	A375_MHC_IP_R1	1	458.1745910644531	2	458.248349	914.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.217	1	25.217	24.717	25.717	0								0	0	0	0.14483	1	7319	7319		27.629	0.74515	1				21115	2802	15274	15383	20705	20705					0.02148310375048368
IGACSRSAWGP	11	Unmodified	_IGACSRSAWGP_					0	0	0			REV__ENST00000358406.9_1_7:142960640-142961239:+|nuORF	REV__ENST00000358406.9_1_7:142960640-142961239:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	368.94525146484375	3	368.846681	1103.51821	0.2424	8.9409E-05	-3.7	-0.0013647	-3.4576	-0.0012753	368.8447578070978	34.252	0.3019	34.252	34.001	34.303	0					6	5	2	0	0	0	0.99881	1	11183	11183		0.094841	0	1	513820	+		21116	23857	15275	15384	20706	20706					-0.029405557197605958
IGADPREI	8	Unmodified	_IGADPREI_					0	0	0		ENST00000421540.1_1_20:34280185-34287249:-|nuORF;nc|ENSG00000244005|Q9Y697-2|NFS1;nc|ENSG00000244005|Q9Y697-3|NFS1;ENSG00000244005|ENST00000374092|NFS1	ENST00000421540.1_1_20:34280185-34287249:-|nuORF	ENST00000421540.1_1_20:34280185-34287249:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	436.1375732421875	2	435.737617	869.460681	-0.32562	-0.00014189	0.1232	5.3682E-05	-0.20242	-8.8203E-05	435.7377204592165	37.938	0.4598	37.938	37.658	38.118	0					16	8	3	0	0	0	0.88903	1	12867	12867		24.021	0	1	2368500			21117	9817	15276	15385	20707	20707					0.020729253463287023
IGADPREI	8	Unmodified	_IGADPREI_					0	0	0		ENST00000421540.1_1_20:34280185-34287249:-|nuORF;nc|ENSG00000244005|Q9Y697-2|NFS1;nc|ENSG00000244005|Q9Y697-3|NFS1;ENSG00000244005|ENST00000374092|NFS1	ENST00000421540.1_1_20:34280185-34287249:-|nuORF	ENST00000421540.1_1_20:34280185-34287249:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	435.737617	869.460681	-0.8542	-0.00037221	0.5198	0.00022649	-0.3344	-0.00014571	435.7377784375062	37.184	0.45547	37.955	37.716	38.171	0.7709	0.0086038	0.00023426	NaN	24.021	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1591800			21118	9817	15276	15385							0.020729253463287023
IGAFFTMLV	9	Unmodified	_IGAFFTMLV_					0	0	0			REV__ENSG00000105370|ENST00000596399|LIM2	REV__ENSG00000105370|ENST00000596399|LIM2	MULTI-MSMS	A375_MHC_IP_R1	1	500.1922912597656	2	499.772614	997.530675	-0.52257	-0.00026117	1.7052	0.00085221	1.1826	0.00059104	499.77351986990413	80.499	0.65847	80.499	80.086	80.744	0					15	12	2	0	0	0	0.60623	1	29361	29361		14.582	1.0738	1	1171700	+		21119	17375	15277	15386	20708	20708					0.031810876905751684
IGAGAKLPIFL	11	Unmodified	_IGAGAKLPIFL_					0	0	0		ENST00000594723.1_1_19:49138126-49138372:-|nuORF	ENST00000594723.1_1_19:49138126-49138372:-|nuORF	ENST00000594723.1_1_19:49138126-49138372:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	550.7467041015625	2	550.347335	1098.68012	-0.7795	-0.00042899	-0.15122	-8.3224E-05	-0.93072	-0.00051222	550.3472684554482	130.92	0.20422	131.14	131.01	131.21	0.2142					5	3	2	0	0	0	0.95991	1	51527	51527		18.146	4.2403	1	4696600			21120	13832	15278	15387	20709	20709					0.1347235630482828
IGAGYSWR	8	Unmodified	_IGAGYSWR_					0	0	0			REV__ENSG00000100347|ENST00000350028|SAMM50	REV__ENSG00000100347|ENST00000350028|SAMM50	MULTI-SECPEP	A375_MHC_IP_R1	1	909.2859497070312	1	909.457727	908.450451	0.020147	1.8323E-05	1.1042	0.0010042	1.1243	0.0010225	909.4616754656315	126.04	0.30019	126.04	125.8	126.1	0					6	5	2	0	0	0	0.93416	1	48040	48040		9.3474	0	1	5874400	+		21121	17079	15279	15388	20710	20710					-0.0074363758824347315
IGAIIVLIVVL	11	Unmodified	_IGAIIVLIVVL_					0	0	0		ENSG00000091138|ENST00000340010|SLC26A3	ENSG00000091138|ENST00000340010|SLC26A3	ENSG00000091138|ENST00000340010|SLC26A3	MULTI-SECPEP	A375_MHC_IP_R2	2	561.6426391601562	2	561.89666	1121.77877	-0.67794	-0.00038093	-2.6847	-0.0015085	-3.3627	-0.0018895	561.8970692763669	96.611	0.15118	97.367	97.268	97.419	0.75586					4	2	2	0	0	0	0.99526	1	36688	36688		0.35063	0	1	485350			21122	1972	15280	15389	20711	20711					0.22274959549895357
IGAYRQYKL	9	Unmodified	_IGAYRQYKL_					0	0	0		nc|ENSG00000187720|Q6ZMP0-2|THSD4;ENSG00000187720|ENST00000261862|THSD4	nc|ENSG00000187720|Q6ZMP0-2|THSD4	nc|ENSG00000187720|Q6ZMP0-2|THSD4	MULTI-SECPEP	A375_MHC_IP_R1	1	370.6327209472656	3	371.213469	1110.61858	-0.00499	-1.8523E-06	-0.010456	-3.8813E-06	-0.015446	-5.7336E-06	371.2134342639319	30.478	0.20147	30.478	30.301	30.503	0					5	3	2	0	0	0	0.78348	1	9679	9679		2.4985	1.5362	1	849440			21123	8852	15281	15390	20712	20712					0.0676942460556802
IGCCFYFL	8	Unmodified	_IGCCFYFL_					0	0	0			REV__ENST00000606080.1_1_6:116381649-116381904:-|nuORF	REV__ENST00000606080.1_1_6:116381649-116381904:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	483.615966796875	2	483.216617	964.418682	-0.45367	-0.00021922	-0.55681	-0.00026906	-1.0105	-0.00048828	483.2162600904452	86.731	0.7625	87.464	87.203	87.966	0.733					27	14	3	0	0	0	0.90851	1	32993	32993		24.21	1.0615	1	3784000	+		21124	26537	15282	15391	20713	20713					-0.06495089658062625
IGCVFNHQ	8	Unmodified	_IGCVFNHQ_					0	0	0		ENSG00000101624|ENST00000262127|CEP76;ENST00000590143.5_1_18:12662154-12700964:-|nuORF;nc|ENSG00000101624|Q8TAP6-2|CEP76	ENSG00000101624|ENST00000262127|CEP76	ENSG00000101624|ENST00000262127|CEP76	MULTI-SECPEP	A375_MHC_IP_R1	1	917.2445678710938	1	917.429798	916.422522	0.13021	0.00011946	-0.34702	-0.00031837	-0.2168	-0.0001989	917.4300300880951	117.25	1.0147	117.25	116.5	117.51	0					23	19	2	0	0	0	0.972	1	42990	42990		2.5775	1.7838	1	29691000			21125	2314	15283	15392	20714	20714					-0.03903283839986216
IGDDDEDIDD	10	Unmodified	_IGDDDEDIDD_					0	0	0		ENST00000485584.1_1_Y:22749894-22754229:+|nuORF;ENSG00000198692|ENST00000361365|EIF1AY;ENSG00000173674|ENST00000379607|EIF1AX	ENST00000485584.1_1_Y:22749894-22754229:+|nuORF	ENST00000485584.1_1_Y:22749894-22754229:+|nuORF	MSMS	A375_MHC_IP_R1	1	561.2034301757812	2	561.20948	1120.40441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.731	1	91.731	91.231	92.231	0								0	0	0	0.15435	1	33706	33706		6.7232	0.51738	1				21126	7819	15284	15393	20715	20715					-0.1509783686233277
IGDDKVALF	9	Unmodified	_IGDDKVALF_					0	0	0			REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	MULTI-SECPEP	A375_MHC_IP_R1	1	489.66925048828125	2	489.26875	976.522947	-0.19786	-9.6809E-05	0.98174	0.00048033	0.78387	0.00038352	489.2693431005396	81.844	0.50654	81.844	81.607	82.113	0					14	9	2	0	0	0	0.4261	1	29968	29968		37.974	13.953	1	1218600	+		21127	15922	15285	15394	20716	20716					0.03374651694662134
IGDECDDDDD	10	Unmodified	_IGDECDDDDD_					0	0	0		ENSG00000113296|ENST00000350881|THBS4	ENSG00000113296|ENST00000350881|THBS4	ENSG00000113296|ENST00000350881|THBS4	MSMS	A375_MHC_IP_R1	1	556.2186279296875	2	556.172041	1110.32953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.32	1	104.32	103.82	104.82	0								0	0	0	0.15585	1	38308	38308		1.8442	1.0506	1				21128	3138	15286	15395	20717	20717					-0.2212234266521591
IGDEFQGY	8	Unmodified	_IGDEFQGY_					0	0	0			REV__ENSG00000124491|ENST00000264870|F13A1	REV__ENSG00000124491|ENST00000264870|F13A1	MULTI-MSMS	A375_MHC_IP_R2	2	465.1215515136719	2	464.705983	927.397412	-0.36261	-0.00016851	1.2229	0.00056828	0.86027	0.00039977	464.7071977233885	95.024	0.76301	95.774	95.432	96.195	0.75045					27	14	3	0	0	0	0.76683	1	36235	36235		15.768	0	1	3077200	+		21129	18307	15287	15396	20718	20718					-0.06919060161567359
IGDGDADD	8	Unmodified	_IGDGDADD_					0	0	0			REV__ENSG00000169231|ENST00000368378|THBS3	REV__ENSG00000169231|ENST00000368378|THBS3	MSMS	A375_MHC_IP_R1	1	389.13714599609375	2	389.148497	776.282442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.882	1	69.882	69.382	70.382	0								0	0	0	0.16876	1	25364	25364		2.8892	0	1		+		21130	20920	15288	15397	20719	20719					-0.11464789363378713
IGDKILEEH	9	Unmodified	_IGDKILEEH_					0	0	0		tr|U7SQH1|U7SQH1_FUSNUHDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01637PE=4SV=1	tr|U7SQH1|U7SQH1_FUSNUHDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01637PE=4SV=1	tr|U7SQH1|U7SQH1_FUSNUHDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01637PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	526.6773071289062	2	527.282389	1052.55022	-0.32073	-0.00016912	0.64186	0.00033844	0.32113	0.00016932	527.2824126013356	92.325	1.4727	92.325	91.857	93.329	0					35	28	2	0	0	0	0.53748	1	33931	33931		30.637	16.231	1	1130500			21131	29588	15289	15398	20720	20720					0.026051352350577872
IGDLGSNFF	9	Unmodified	_IGDLGSNFF_					0	0	0		nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10;ENSG00000157637|ENST00000374759|SLC38A10	nc|ENSG00000157637|Q9HBR0-3|SLC38A10	nc|ENSG00000157637|Q9HBR0-3|SLC38A10	MULTI-MSMS	A375_MHC_IP_R2	2	486.66705322265625	2	485.23745	968.460347	-0.83511	-0.00040523	0.1405	6.8174E-05	-0.69462	-0.00033705	485.2374418546227	40.942	0.91419	41.716	41.386	42.3	0.77451					50	17	4	0	0	0	0.41409	1	15091	15091		24.021	3.5669	1	47475000			21132	6257	15290	15399	20721	20721					-0.025144943735199377
IGDLIGELV	9	Unmodified	_IGDLIGELV_					0	0	0			REV__ENST00000585047.5_1_17:38218205-38233770:+|nuORF	REV__ENST00000585047.5_1_17:38218205-38233770:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	927.7562255859375	1	928.534975	927.527698	-0.34762	-0.00032278	-0.57166	-0.00053081	-0.91928	-0.00085359	928.534077341116	128.49	0.30501	128.73	128.6	128.91	0.23946					9	5	3	0	0	0	0.39388	1	50434	50434		39.957	5.8549	1	20813000	+		21133	26320	15291	15400	20722	20722					0.06103535837428353
IGDLLYKKL	9	Unmodified	_IGDLLYKKL_					0	0	0			REV__ENSG00000205765|ENST00000381647|RIMOC1	REV__ENSG00000205765|ENST00000381647|RIMOC1	MULTI-SECPEP	A375_MHC_IP_R2	2	355.1039733886719	3	354.890104	1061.64848	-0.46977	-0.00016672	-1.1166	-0.00039629	-1.5864	-0.000563	354.88983108423184	54.309	0.35411	55.059	54.814	55.169	0.75075					8	6	2	0	0	0	0.81275	1	20463	20463		0.96228	0	1	749370	+		21134	22583	15292	15401	20723	20723					0.12012363550888949
IGDPSRWGC	9	Unmodified	_IGDPSRWGC_					0	0	0		ENST00000490936.5_1_X:153578959-153579424:-|nuORF	ENST00000490936.5_1_X:153578959-153579424:-|nuORF	ENST00000490936.5_1_X:153578959-153579424:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	496.1271667480469	2	495.726726	989.4389	-0.12904	-6.3966E-05	1.5208	0.00075392	1.3918	0.00068996	495.72721251781604	108.74	0.50514	108.74	108.56	109.07	0					16	9	2	0	0	0	0.46038	1	39919	39919		21.747	0.20967	1	1841100			21135	12650	15293	15402	20724	20724					-0.05624202673891432
IGDPSRWGC	9	Unmodified	_IGDPSRWGC_					0	0	0		ENST00000490936.5_1_X:153578959-153579424:-|nuORF	ENST00000490936.5_1_X:153578959-153579424:-|nuORF	ENST00000490936.5_1_X:153578959-153579424:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	495.726726	989.4389	-0.47179	-0.00023388	1.2415	0.00061546	0.76973	0.00038158	495.7270959479844	108.07	0.61497	108.82	108.56	109.17	0.75436	0.042575	-8.4172E-05	NaN	21.747	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2171600			21136	12650	15293	15402							-0.05624202673891432
IGDTHASEV	9	Unmodified	_IGDTHASEV_					0	0	0		MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;ENST00000470521.1_1_1:222791452-222819114:+|nuORF	MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant;ENST00000470521.1_1_1:222791452-222819114:+|nuORF	MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	464.13311767578125	2	464.722164	927.429775	-0.42109	-0.00019569	-1.3172	-0.00061213	-1.7383	-0.00080782	464.72150410015354	95.412	0.51132	96.162	95.836	96.347	0.75044					20	9	3	0	0	0	0.3243	1	36194	36194		36.044	5.8194	1	1866700			21137	6080;12336	15294	15403	20725	20725					-0.036842727585622015
IGEELWKDL	9	Unmodified	_IGEELWKDL_					0	0	0		tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1	tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1	tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	551.658935546875	2	551.792589	1101.57063	-0.36126	-0.00019934	-2.2516	-0.0012424	-2.6128	-0.0014417	551.7912241969711	78.884	0.55482	78.884	78.556	79.111	0					13	10	2	0	0	0	0.55359	1	28840	28840		15.847	0	1	1368600			21138	29443	15295	15404	20726	20726					0.023903058948462785
IGELILKRLIL	11	Unmodified	_IGELILKRLIL_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MSMS	A375_MHC_IP_R2	2	640.9901733398438	2	640.936848	1279.85914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.624	1	81.368	80.868	81.868	0.74474								0	0	0	0.16302	1	30611	30611		2.9952	1.6657	1				21139	6672	15296	15405	20727	20727					0.2304082087293864
IGEVTDRNL	9	Unmodified	_IGEVTDRNL_					0	0	0			REV__ENSG00000155530|ENST00000285928|LRGUK	REV__ENSG00000155530|ENST00000285928|LRGUK	MULTI-MSMS	A375_MHC_IP_R1	1	509.1718444824219	2	508.772188	1015.52982	-0.3243	-0.00016499	0.072006	3.6635E-05	-0.25229	-0.00012836	508.772131709635	53.687	0.55973	53.687	53.403	53.962	0					29	10	4	0	0	0	0.082375	1	19139	19139		53.833	0.42879	1	4251200	+		21140	19927	15297	15406	20728	20728					0.022679645752418764
IGFKKVFKF	9	Unmodified	_IGFKKVFKF_					0	0	0		AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;ENSG00000131016|ENST00000402676|AKAP12	AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant	AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	372.2989196777344	3	371.898822	1112.67464	0.33414	0.00012427	-0.56306	-0.0002094	-0.22892	-8.5134E-05	371.8987834720606	57.597	0.65965	57.597	57.364	58.024	0					28	12	3	0	0	0	0.20567	1	20685	20685		28.495	23.597	1	4341100			21141	97	15298	15407	20729	20729					0.12280677513035698
IGFKKVFKF	9	Unmodified	_IGFKKVFKF_					0	0	0		AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;ENSG00000131016|ENST00000402676|AKAP12	AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant	AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	372.2987060546875	3	371.898822	1112.67464	0.11612	4.3183E-05	-0.84972	-0.00031601	-0.73361	-0.00027283	371.8987036575688	56.404	0.56114	57.154	56.898	57.459	0.75015					24	10	3	0	0	0	0.74412	1	21319	21319		6.6304	3.0433	1	4981800			21142	97	15298	15407	20730	20730					0.12280677513035698
IGFNKMLKAL	10	Unmodified	_IGFNKMLKAL_					0	0	0			REV__tr|U7SXB0|U7SXB0_FUSNURecombinationproteinRecROS=FusobacteriumnucleatumCTI-5OX=1316586GN=recRPE=3SV=1	REV__tr|U7SXB0|U7SXB0_FUSNURecombinationproteinRecROS=FusobacteriumnucleatumCTI-5OX=1316586GN=recRPE=3SV=1	MSMS	A375_MHC_IP_R1	1	378.9486389160156	3	378.894972	1133.66309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.801	1	20.801	20.301	21.301	0								0	0	0	0.15158	1	5389	5389		8.9762	0.53194	1		+		21143	28618	15299	15408	20731	20731					0.10160112427388412
IGGIGTVPVGR	11	Unmodified	_IGGIGTVPVGR_					0	0	0		EEF1A1|p.F424Cfs*3|1|0.17|ENSG00000156508|chr6:73517924-73517928|AGCAA/-|frameshift_variant;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000436459.2_1_9:135895553-135896258:+|nuORF	EEF1A1|p.F424Cfs*3|1|0.17|ENSG00000156508|chr6:73517924-73517928|AGCAA/-|frameshift_variant	EEF1A1|p.F424Cfs*3|1|0.17|ENSG00000156508|chr6:73517924-73517928|AGCAA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	514.0089721679688	2	513.308741	1024.60293	-0.34301	-0.00017607	-0.0032477	-1.6671E-06	-0.34626	-0.00017774	513.3086085091871	51.516	0.40584	51.516	51.322	51.728	0					10	7	2	0	0	0	0.77444	1	18272	18272		29.437	10.075	1	1296900			21144	821	15300	15409	20732	20732					0.09161138088529697
IGGIGTVPVGR	11	Unmodified	_IGGIGTVPVGR_					0	0	0		EEF1A1|p.F424Cfs*3|1|0.17|ENSG00000156508|chr6:73517924-73517928|AGCAA/-|frameshift_variant;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000436459.2_1_9:135895553-135896258:+|nuORF	EEF1A1|p.F424Cfs*3|1|0.17|ENSG00000156508|chr6:73517924-73517928|AGCAA/-|frameshift_variant	EEF1A1|p.F424Cfs*3|1|0.17|ENSG00000156508|chr6:73517924-73517928|AGCAA/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	513.308741	1024.60293	-0.85452	-0.00043863	-0.066594	-3.4183E-05	-0.92112	-0.00047282	513.3087104568538	50.847	0.35337	51.601	51.361	51.715	0.75406	0.042676	-1.3166E-05	NaN	42.312	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1386200			21145	821	15300	15409							0.09161138088529697
IGGISVLGTT	10	Unmodified	_IGGISVLGTT_					0	0	0		tr|U7SWG5|U7SWG5_FUSNUCobalt-precorrin-5BC(1)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiDPE=3SV=1	tr|U7SWG5|U7SWG5_FUSNUCobalt-precorrin-5BC(1)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiDPE=3SV=1	tr|U7SWG5|U7SWG5_FUSNUCobalt-precorrin-5BC(1)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiDPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	459.1332092285156	2	459.26875	916.522947	-0.31244	-0.00014349	0.15232	6.9957E-05	-0.16011	-7.3536E-05	459.26874455403754	76.52	0.45389	76.52	76.219	76.673	0					10	8	2	0	0	0	0.69172	1	27889	27889		32.305	6.9062	1	462700			21146	29808	15301	15410	20733	20733					0.06134651694674176
IGGKYSHLPY	10	Unmodified	_IGGKYSHLPY_					0	0	0		nc|ENSG00000140876|P0C024-2|NUDT7;ENSG00000140876|ENST00000268533|NUDT7;nc|ENSG00000140876|P0C024-3|NUDT7	nc|ENSG00000140876|P0C024-2|NUDT7	nc|ENSG00000140876|P0C024-2|NUDT7	MSMS	A375_MHC_IP_R2	2	567.713623046875	2	567.800749	1133.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.49	1	88.222	87.722	88.722	0.7318								0	0	0	0.15089	1	33274	33274		16.149	2.2431	1				21147	5192	15302	15411	20734	20734					0.02549431851616646
IGGLISSLAV	10	Unmodified	_IGGLISSLAV_					0	0	0			REV__KCNG2|p.S392G|1|0.17|ENSG00000178342|chr18:79899589-79899589|A/G|missense_variant	REV__KCNG2|p.S392G|1|0.17|ENSG00000178342|chr18:79899589-79899589|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	465.6923828125	2	465.286943	928.559333	-0.56528	-0.00026302	-0.051704	-2.4057E-05	-0.61698	-0.00028707	465.28692803879784	64.085	0.40627	64.825	64.648	65.054	0.74022					11	7	2	0	0	0	0.48072	1	24247	24247		37.974	0	1	794800	+		21148	26824	15303	15412	20735	20735					0.09219528591370363
IGGPFLNGYY	10	Unmodified	_IGGPFLNGYY_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-2|FAT4	REV__nc|ENSG00000196159|Q6V0I7-2|FAT4	MULTI-MSMS	A375_MHC_IP_R1	1	550.7323608398438	2	550.7742	1099.53385	-0.80039	-0.00044083	-2.1857	-0.0012038	-2.9861	-0.0016447	551.2731152764837	68.372	0.76226	68.372	68.006	68.769	0					24	14	3	0	0	0	0.70146	1	24717	24717		11.64	2.8949	1	1492900	+		21149	22165	15304	15413	20736	20736					-0.011939459310497114
IGGPRLAK	8	Unmodified	_IGGPRLAK_					0	0	0			REV__ENSG00000178694|ENST00000314622|NSUN3	REV__ENSG00000178694|ENST00000314622|NSUN3	MULTI-SECPEP	A375_MHC_IP_R2	2	810.7733154296875	1	811.514848	810.507572	-0.83539	-0.00067793	-4.1915	-0.0034014	-5.0269	-0.0040794	811.5122158657293	124.82	0.30235	125.15	124.95	125.25	0.32968					8	5	2	0	0	0	0.92215	1	48268	48268		10.183	4.423	1	44957000	+		21150	21514	15305	15414	20737	20737					0.09473829688124624
IGGSGFFFED	10	Unmodified	_IGGSGFFFED_					0	0	0			REV__ENSG00000100418|ENST00000263256|DESI1	REV__ENSG00000100418|ENST00000263256|DESI1	MULTI-MSMS	A375_MHC_IP_R1	1	538.640380859375	2	538.24019	1074.46583	-0.62969	-0.00033892	0.6257	0.00033678	-0.0039866	-2.1458E-06	538.2405126414278	77.758	0.6628	77.758	77.436	78.099	0					25	12	3	0	0	0	0.60556	1	28341	28341		20.454	4.6064	1	4510000	+		21151	17090	15306	15415	20738	20738					-0.06842815581717332
IGGSILASL	9	Unmodified	_IGGSILASL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENSG00000181786|ENST00000324436|ACTL9;ENST00000461125.1_1_3:179304300-179305795:+|nuORF;ENST00000428275.1_1_X:53172047-53172134:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000138107|ENST00000369905|ACTR1A;ENST00000470322.5_1_10:104240622-104242055:-|nuORF;ENST00000484312.1_1_3:179298984-179304429:+|nuORF;nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000077080|ENST00000160382|ACTL6B;ENSG00000136518|ENST00000429709|ACTL6A;ENSG00000115073|ENST00000289228|ACTR1B	ENSG00000075624|ENST00000646664|ACTB;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000138107|ENST00000369905|ACTR1A;ENST00000484312.1_1_3:179298984-179304429:+|nuORF;ENSG00000115073|ENST00000289228|ACTR1B	ENSG00000075624|ENST00000646664|ACTB	MULTI-SECPEP	A375_MHC_IP_R1	1	416.1529846191406	2	415.752736	829.490919	0.42169	0.00017532	0.0034426	1.4313E-06	0.42513	0.00017675	415.75267778320114	51.5	0.61013	51.5	51.168	51.778	0					20	11	2	0	0	0	0.061132	1	18276	18276		67.344	0	1	2735400			21152	1615;5418;4958;3267;1645	15307	15416	20739	20739					0.06935284011501608
IGGSLALYQIG	11	Unmodified	_IGGSLALYQIG_					0	0	0			REV__ENST00000409185.5_1_2:131806798-131807053:-|nuORF	REV__ENST00000409185.5_1_2:131806798-131807053:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	364.92315673828125	3	364.541363	1090.60226	-0.13506	-4.9233E-05	-0.1326	-4.8339E-05	-0.26766	-9.7572E-05	364.5411771925453	41.514	0.30421	42.289	42.149	42.453	0.77451					9	5	2	0	0	0	0.63149	1	15452	15452		20.871	3.4285	1	1824200	+		21153	24463	15308	15417	20740	20740					0.060582986487816015
IGGSLALYQIG	11	Unmodified	_IGGSLALYQIG_					0	0	0			REV__ENST00000409185.5_1_2:131806798-131807053:-|nuORF	REV__ENST00000409185.5_1_2:131806798-131807053:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	364.541363	1090.60226	-0.13506	-4.9233E-05	-0.1326	-4.8339E-05	-0.26766	-9.7572E-05	364.5411771925453	41.514	0.30421	42.289	42.149	42.453	0.77451	-0.060979	0.00045817	NaN	20.871	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1824200	+		21154	24463	15308	15417							0.060582986487816015
IGGSWTLGSI	10	Unmodified	_IGGSWTLGSI_					0	0	0		ENSG00000196071|ENST00000358120|OR2L13	ENSG00000196071|ENST00000358120|OR2L13	ENSG00000196071|ENST00000358120|OR2L13	MULTI-MSMS	A375_MHC_IP_R2	2	495.6663818359375	2	495.766374	989.518196	-0.75398	-0.0003738	0.69065	0.0003424	-0.063331	-3.1397E-05	495.7666580413762	38.756	0.56332	39.53	39.351	39.914	0.77451					16	10	2	0	0	0	0.58828	1	14385	14385		21.747	1.293	1	3801800			21155	8987	15309	15418	20741	20741					0.023017675519099612
IGHMMGPSL	9	Unmodified	_IGHMMGPSL_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	A375_MHC_IP_R1	1	472.1304626464844	2	471.730423	941.446293	-0.41252	-0.0001946	0.31886	0.00015042	-0.093664	-4.4184E-05	471.7305555720317	73.868	0.50637	73.868	73.64	74.146	0					11	9	2	0	0	0	0.74651	1	26936	26936		8.5933	3.8373	1	1298100	+		21156	18428	15310	15419	20742	20742					-0.026771863978069632
IGHRITCLR	9	Unmodified	_IGHRITCLR_					0	0	0		ENST00000475645.1_1_6:106633518-106633809:-|nuORF	ENST00000475645.1_1_6:106633518-106633809:-|nuORF	ENST00000475645.1_1_6:106633518-106633809:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	357.4490661621094	3	356.874682	1067.60222	0.066078	2.3582E-05	-1.2484	-0.00044552	-1.1823	-0.00042194	356.87404272289206	77.716	0.40855	77.716	77.486	77.895	0					11	7	2	0	0	0	0.8028	1	28295	28295		0.96228	0.96228	1	966430			21157	12422	15311	15420	20743	20743					0.07112020167801347
IGHVFGAEVRK	11	Unmodified	_IGHVFGAEVRK_					0	0	0		tr|U7SJ70|U7SJ70_FUSNUPara-aminobenzoatesynthetasecomponentIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02129PE=4SV=1	tr|U7SJ70|U7SJ70_FUSNUPara-aminobenzoatesynthetasecomponentIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02129PE=4SV=1	tr|U7SJ70|U7SJ70_FUSNUPara-aminobenzoatesynthetasecomponentIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02129PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	405.2998352050781	3	404.899773	1211.67749	-0.15691	-6.3535E-05	0.98437	0.00039857	0.82745	0.00033504	404.8998188408185	22.853	0.55272	22.853	22.572	23.125	0					23	10	3	0	0	0	0.69069	1	6212	6212		16.275	2.7559	1	2069200			21158	29445	15312	15421	20744	20744					0.08011900899896318
IGIALFIILVW	11	Unmodified	_IGIALFIILVW_					0	0	0		tr|U7SYI7|U7SYI7_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00894PE=3SV=1	tr|U7SYI7|U7SYI7_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00894PE=3SV=1	tr|U7SYI7|U7SYI7_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00894PE=3SV=1	MSMS	A375_MHC_IP_R2	2	629.310791015625	2	629.40211	1256.78967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.04	1	112.76	112.26	113.26	0.72458								0	0	0	0.1629	1	42240	42240		3.5965	0.31518	1				21159	29839	15313	15422	20745	20745					0.1715436192416746
IGIDVGSTTL	10	Unmodified	_IGIDVGSTTL_					0	0	0		tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	489.1966552734375	2	488.27149	974.528426	-0.22551	-0.00011011	-0.20879	-0.00010194	-0.43429	-0.00021205	488.27131717686325	63.388	0.56233	63.388	63.173	63.735	0					28	10	4	0	0	0	0.14594	1	22911	22911		54.774	14.816	1	4965300			21160	29519	15314	15423	20746	20746					0.0401433048649551
IGIDVGSTTL	10	Unmodified	_IGIDVGSTTL_					0	0	0		tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	488.4692687988281	2	488.27149	974.528426	-0.77704	-0.00037941	-0.095945	-4.6847E-05	-0.87298	-0.00042625	488.27133879154917	65.911	0.76479	66.649	66.324	67.089	0.73811					34	14	3	0	0	0	0.2728	1	25105	25105		39.957	14.558	1	9339100			21161	29519	15314	15423	20747	20747					0.0401433048649551
IGIDVGSTTL	10	Unmodified	_IGIDVGSTTL_					0	0	0		tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	488.4691467285156	2	488.27149	974.528426	-0.497	-0.00024267	-0.6474	-0.00031611	-1.1444	-0.00055878	488.2713423690991	64.089	0.61028	64.83	64.547	65.157	0.74022					27	11	4	0	0	0	0.2728	1	24366	24366		57.471	9.1255	1	2581900			21162	29519	15314	15423	20748	20748					0.0401433048649551
IGIEWNLSP	9	Unmodified	_IGIEWNLSP_					0	0	0		ENSG00000170516|ENST00000355591|COX7B2	ENSG00000170516|ENST00000355591|COX7B2	ENSG00000170516|ENST00000355591|COX7B2	MULTI-SECPEP	A375_MHC_IP_R1	1	515.1734619140625	2	514.7742	1027.53385	-0.51907	-0.0002672	-0.24006	-0.00012357	-0.75912	-0.00039078	514.7739234692938	99.85	0.75484	99.85	99.524	100.28	0					20	14	2	0	0	0	0.47368	1	36671	36671		26.884	6.43	1	3298400			21163	7516	15315	15424	20749	20749					0.021180540689329064
IGITEPFQI	9	Unmodified	_IGITEPFQI_					0	0	0		nc|ENSG00000185133|Q15735-3|INPP5J;nc|ENSG00000185133|Q15735-2|INPP5J;ENSG00000185133|ENST00000331075|INPP5J;INPP5J|p.S840L|1|0.23|ENSG00000185133|chr22:31133917-31133917|C/T|missense_variant	nc|ENSG00000185133|Q15735-3|INPP5J	nc|ENSG00000185133|Q15735-3|INPP5J	MULTI-MSMS	A375_MHC_IP_R2	2	509.2210693359375	2	509.2844	1016.55425	-0.74918	-0.00038154	-0.014618	-7.4446E-06	-0.76379	-0.00038899	509.28435802323196	105.79	1.5776	106.55	106.12	107.7	0.75977					78	30	4	0	0	0	0.27715	1	40208	40208		32.305	3.8186	1	36067000			21164	8644	15316	15425	20750	20750					0.04663224728756177
IGKGQFRA	8	Unmodified	_IGKGQFRA_					0	0	0			REV__TTLL9|p.S172F|1|0.4|ENSG00000131044|chr20:31919874-31919874|C/T|missense_variant	REV__TTLL9|p.S172F|1|0.4|ENSG00000131044|chr20:31919874-31919874|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	439.1559753417969	2	438.756144	875.497735	-0.49509	-0.00021722	0.55114	0.00024182	0.056054	2.4594E-05	438.7562900366001	38.191	0.45867	38.191	37.913	38.371	0					16	8	3	0	0	0	0.94479	1	12911	12911		13.508	0	1	17956000	+		21165	28928	15317	15426	20751	20751					0.05500641682749574
IGKGQFRA	8	Unmodified	_IGKGQFRA_					0	0	0			REV__TTLL9|p.S172F|1|0.4|ENSG00000131044|chr20:31919874-31919874|C/T|missense_variant	REV__TTLL9|p.S172F|1|0.4|ENSG00000131044|chr20:31919874-31919874|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	439.1559753417969	2	438.756144	875.497735	-0.89302	-0.00039182	0.61365	0.00026924	-0.27937	-0.00012258	438.756311678912	37.171	0.40456	37.942	37.716	38.12	0.7709					17	7	3	0	0	0	0.75805	1	13573	13573		18.135	2.2878	1	9786100	+		21166	28928	15317	15426	20752	20752					0.05500641682749574
IGKGQFRA	8	Unmodified	_IGKGQFRA_					0	0	0			REV__TTLL9|p.S172F|1|0.4|ENSG00000131044|chr20:31919874-31919874|C/T|missense_variant	REV__TTLL9|p.S172F|1|0.4|ENSG00000131044|chr20:31919874-31919874|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	438.756144	875.497735	-0.89302	-0.00039182	0.61365	0.00026924	-0.27937	-0.00012258	438.756311678912	37.171	0.40456	37.942	37.716	38.12	0.7709	-0.12438	2.706E-05	NaN	18.135	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9786100	+		21167	28928	15317	15426							0.05500641682749574
IGKIRNHKV	9	Unmodified	_IGKIRNHKV_					0	0	0			REV__ENSG00000131747|ENST00000423485|TOP2A	REV__ENSG00000131747|ENST00000423485|TOP2A	MSMS	A375_MHC_IP_R1	1	355.4599914550781	3	355.561092	1063.66145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.968	1	42.968	42.468	43.468	0								0	0	0	0.15486	1	14915	14915		1.0715	0.10919	1		+		21168	18619	15318	15427	20753	20753					0.1321623945364081
IGKKALKKRLL	11	Unmodified	_IGKKALKKRLL_					0	0	0			REV__ENST00000477693.1_1_2:122488402-122494426:-|nuORF	REV__ENST00000477693.1_1_2:122488402-122494426:-|nuORF	MSMS	A375_MHC_IP_R2	2	634.4111938476562	2	634.450457	1266.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.358	1	84.097	83.597	84.597	0.73962								0	0	0	0.16331	1	31682	31682		1.4819	1.4819	1		+		21169	19923	15319	15428	20754	20754					0.2635934920397176
IGKKNPTL	8	Unmodified	_IGKKNPTL_					0	0	0		tr|U7SUD3|U7SUD3_FUSNUDUF5673domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01385PE=4SV=1	tr|U7SUD3|U7SUD3_FUSNUDUF5673domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01385PE=4SV=1	tr|U7SUD3|U7SUD3_FUSNUDUF5673domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01385PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	436.1734313964844	2	435.774003	869.533452	-0.39207	-0.00017086	-0.24418	-0.00010641	-0.63626	-0.00027726	435.77387559956617	72.552	0.4571	73.287	73.022	73.48	0.7354					14	8	2	0	0	0	0.34394	1	27576	27576		50.855	12.704	1	1355300			21170	29761	15320	15429	20755	20755					0.09346679139753178
IGKMSTAKRT	10	Unmodified	_IGKMSTAKRT_					0	0	0		ENST00000461591.5_1_3:142720470-142741912:+|nuORF;nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;ENST00000470400.5_1_3:142720470-142740424:+|nuORF;ENST00000491827.1_1_3:142733158-142735829:+|nuORF	ENST00000461591.5_1_3:142720470-142741912:+|nuORF	ENST00000461591.5_1_3:142720470-142741912:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	364.6025085449219	3	364.877981	1091.61211	-0.026753	-9.7615E-06	-2.2261	-0.00081225	-2.2528	-0.00082201	365.21160258752377	39.698	0.50859	40.472	40.32	40.828	0.77451					13	9	2	0	0	0	0.87043	1	14621	14621		13.519	2.0008	1	1236500			21171	6711	15321	15430	20756	20756					0.06997163382538929
IGKPIARLILL	11	Unmodified	_IGKPIARLILL_					0	0	0			REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	603.6255493164062	2	603.918458	1205.82236	-0.36308	-0.00021927	1.4775	0.00089232	1.1145	0.00067305	603.9184131806581	93.108	0.15253	93.847	93.746	93.899	0.73902					4	2	2	0	0	0	1.0007	1	35416	35416		1.4819	1.4819	1	673570	+		21172	17182	15322	15431	20757	20757					0.22768569047048004
IGKRHEGK	8	Unmodified	_IGKRHEGK_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11;nc|ENSG00000100109|Q9UBB9-2|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-SECPEP	A375_MHC_IP_R1	1	463.1720275878906	2	462.772326	923.530098	-0.29299	-0.00013559	0.24418	0.000113	-0.04881	-2.2588E-05	462.77243315280157	19.801	0.40828	19.801	19.571	19.98	0					17	7	3	0	0	0	0.972	1	4970	4970		7.9102	0	1	7628600			21173	2121	15323	15432	20758	20758					0.0652742908575874
IGKRSGGKY	9	Unmodified	_IGKRSGGKY_					0	0	0			REV__ARID5A|p.H400Y|1|0.44|ENSG00000196843|chr2:96551726-96551726|C/T|missense_variant	REV__ARID5A|p.H400Y|1|0.44|ENSG00000196843|chr2:96551726-96551726|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6376037597656	2	483.279983	964.545414	-0.90439	-0.00043707	-0.048697	-2.3535E-05	-0.95309	-0.00046061	483.279791169346	38.756	0.50959	39.53	39.25	39.76	0.77451					12	9	2	0	0	0	0.65246	1	14297	14297		10.824	0	1	2383400	+		21174	15446	15324	15433	20759	20759					0.06172295882947765
IGKSQAYMM	9	Unmodified	_IGKSQAYMM_					0	0	0			REV__ENST00000523382.5_1_5:179225178-179228384:-|nuORF	REV__ENST00000523382.5_1_5:179225178-179228384:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	514.6632080078125	2	514.748813	1027.48307	-0.73939	-0.0003806	-0.24572	-0.00012648	-0.98511	-0.00050709	514.748711726264	67.526	0.50981	68.262	68.001	68.511	0.73631					15	9	2	0	0	0	0.73363	1	25486	25486		15.847	11.091	1	2237900	+		21175	25743	15325	15434	20760	20760					-0.029569345719210105
IGKSSDLEPE	10	Unmodified	_IGKSSDLEPE_					0	0	0			REV__ENST00000356116.5_1_10:114172946-114173003:+|nuORF	REV__ENST00000356116.5_1_10:114172946-114173003:+|nuORF	MSMS	A375_MHC_IP_R1	1	537.6666259765625	2	537.769311	1073.52407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.21	1	131.21	130.71	131.71	0								0	0	0	0.15207	1	50585	50585		13.906	1.3745	1		+		21176	23829	15326	15435	20761	20761					-0.009751787270943169
IGKVTGPAYTL	11	Unmodified	_IGKVTGPAYTL_					0	0	0			REV__ENSG00000152580|ENST00000282466|IGSF10	REV__ENSG00000152580|ENST00000282466|IGSF10	MULTI-MSMS	A375_MHC_IP_R1	1	560.89697265625	2	560.324057	1118.63356	-0.62846	-0.00035214	0.16056	8.9965E-05	-0.46791	-0.00026218	560.3241238816598	91.224	1.1621	91.224	90.845	92.007	0					72	22	5	0	0	0	0.47886	1	33689	33689		32.786	2.1491	1	111330000	+		21177	19808	15327	15436	20762	20762					0.07898871682914432
IGKYGNDSY	9	Unmodified	_IGKYGNDSY_					0	0	0		nc|ENSG00000129071|O95243-5|MBD4;ENSG00000129071|ENST00000429544|MBD4;nc|ENSG00000129071|O95243|MBD4;nc|ENSG00000129071|O95243-6|MBD4	nc|ENSG00000129071|O95243-5|MBD4	nc|ENSG00000129071|O95243-5|MBD4	MULTI-SECPEP	A375_MHC_IP_R1	1	508.7158508300781	2	508.737814	1015.46108	-0.31807	-0.00016181	-1.2297	-0.00062557	-1.5477	-0.00078739	508.73762784043765	40.534	0.86011	40.534	40.203	41.063	0					20	16	2	0	0	0	0.74651	1	14008	14008		8.5933	0	1	2580300			21178	4176	15328	15437	20763	20763					-0.046036997244755185
IGLARRTV	8	Unmodified	_IGLARRTV_					0	0	0			REV__ENSG00000170819|ENST00000302334|BFSP2	REV__ENSG00000170819|ENST00000302334|BFSP2	MULTI-MSMS	A375_MHC_IP_R2	2	443.2720947265625	2	443.285069	884.555585	-0.47779	-0.0002118	0.20044	8.8854E-05	-0.27734	-0.00012294	443.2850305065812	41.513	0.25253	42.287	42.149	42.401	0.77451					6	4	2	0	0	0	0.77488	1	15450	15450		13.508	1.8676	1	946630	+		21179	21021	15329	15438	20764	20764					0.10868903608172786
IGLARRTV	8	Unmodified	_IGLARRTV_					0	0	0			REV__ENSG00000170819|ENST00000302334|BFSP2	REV__ENSG00000170819|ENST00000302334|BFSP2	MULTI-MATCH	A375_MHC_IP_R1	1		2	443.285069	884.555585	0.094376	4.1835E-05	-0.066062	-2.9284E-05	0.028313	1.2551E-05	443.28491459829314	42.63	0.35377	42.63	42.436	42.79	0	0.17108	-9.1992E-05	NaN	13.508	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1051500	+		21180	21021	15329	15438							0.10868903608172786
IGLARRTV	8	Unmodified	_IGLARRTV_					0	0	0			REV__ENSG00000170819|ENST00000302334|BFSP2	REV__ENSG00000170819|ENST00000302334|BFSP2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	443.285069	884.555585	-0.47779	-0.0002118	0.20044	8.8854E-05	-0.27734	-0.00012294	443.2850305065812	41.513	0.25253	42.287	42.149	42.401	0.77451	-0.17108	0.00014428	NaN	13.508	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	946630	+		21181	21021	15329	15438							0.10868903608172786
IGLDKLTKVAD	11	Unmodified	_IGLDKLTKVAD_					0	0	0			REV__nc|ENSG00000172752|A8TX70-2|COL6A5	REV__nc|ENSG00000172752|A8TX70-2|COL6A5	MULTI-SECPEP	A375_MHC_IP_R2	2	392.3021545410156	3	391.567689	1171.68124	-0.15866	-6.2125E-05	0.16608	6.5032E-05	0.0074246	2.9073E-06	391.5677507412838	64.674	0.61127	65.414	65.157	65.768	0.74022					33	11	4	0	0	0	0.90557	1	24504	24504		25.997	0	1	8568300	+		21182	21167	15330	15439	20765	20765					0.10226525883103932
IGLDMSEPV	9	Unmodified	_IGLDMSEPV_					0	0	0			REV__ENSG00000138308|ENST00000373032|PLA2G12B	REV__ENSG00000138308|ENST00000373032|PLA2G12B	MSMS	A375_MHC_IP_R2	2	480.6915588378906	2	480.738968	959.463383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.04	1	72.774	72.274	73.274	0.73421								0	0	0	0.15486	1	27336	27336		13.508	0	1		+		21183	19082	15331	15440	20766	20766					-0.01796987311013254
IGLDVSCDS	9	Carbamidomethyl (C)	_IGLDVSC(Carbamidomethyl (C))DS_	IGLDVSC(1)DS		IGLDVSC(60)DS		0	1	0			REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-MSMS	A375_MHC_IP_R1	1	483.6156311035156	2	483.215857	964.417161	-0.37341	-0.00018044	0.61339	0.0002964	0.23998	0.00011596	483.2161270115339	87.428	0.61123	87.428	87.237	87.848	0					25	11	3	0	0	0	0.060021	1	32074	32074		60.39	6.814	1	5560900	+		21184	17759	15332	15441	20767	20767	75				-0.06647052213111238
IGLDVSCDS	9	Carbamidomethyl (C)	_IGLDVSC(Carbamidomethyl (C))DS_					0	1	0			REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	483.215857	964.417161	-0.37341	-0.00018044	0.61339	0.0002964	0.23998	0.00011596	483.2161270115339	87.428	0.61123	87.428	87.237	87.848	0	-0.018186	-0.00020117	NaN	60.39	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5560900	+		21185	17759	15332	15441			75				-0.06647052213111238
IGLFLRLVLLC	11	Unmodified	_IGLFLRLVLLC_					0	0	0			REV__ENST00000472800.1_1_2:74756265-74756756:-|nuORF	REV__ENST00000472800.1_1_2:74756265-74756756:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	630.8601684570312	2	630.399044	1258.78354	-0.65886	-0.00041534	-1.8357	-0.0011572	-2.4945	-0.0015725	630.3973939153078	95.571	0.30508	96.322	96.093	96.398	0.75045					6	5	2	0	0	0	0.99881	1	36256	36256		1.4819	0	1	1417900	+		21186	17872	15333	15442	20768	20768					0.1644952042101977
IGLGVSHPVL	10	Unmodified	_IGLGVSHPVL_					0	0	0		ENSG00000140740|ENST00000268379|UQCRC2;ENST00000563711.5_1_16:21973998-21987565:+|nuORF	ENSG00000140740|ENST00000268379|UQCRC2	ENSG00000140740|ENST00000268379|UQCRC2	MULTI-SECPEP	A375_MHC_IP_R1	1	496.3160400390625	2	496.300384	990.586216	-0.33383	-0.00016568	1.4099	0.00069973	1.0761	0.00053405	496.30086537549386	104.65	0.35474	104.65	104.49	104.84	0					10	6	2	0	0	0	0.62479	1	38438	38438		28.487	0	1	802430			21187	5181	15334	15443	20769	20769					0.0905463720255284
IGLPGAGKTTW	11	Unmodified	_IGLPGAGKTTW_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2083740234375	2	550.808574	1099.60259	-0.31935	-0.0001759	-0.0173	-9.5292E-06	-0.33665	-0.00018543	550.8083901410869	71.783	0.7037	71.783	71.465	72.169	0					28	13	3	0	0	0	0.08631	1	26082	26082		62.869	36.6	1	5605600			21188	6014	15335	15444	20770	20770					0.05677718368656315
IGLPGAGKTTW	11	Unmodified	_IGLPGAGKTTW_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-MSMS	A375_MHC_IP_R2	2	551.2072143554688	2	550.808574	1099.60259	-0.90997	-0.00050122	-0.026441	-1.4564E-05	-0.93641	-0.00051578	550.8085168059675	70.969	0.91187	71.704	71.402	72.314	0.73421					30	17	3	0	0	0	0.49349	1	26881	26881		31.636	10.099	1	7610600			21189	6014	15335	15444	20771	20771					0.05677718368656315
IGLRRIRPL	9	Unmodified	_IGLRRIRPL_					0	0	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-MSMS	A375_MHC_IP_R1	1	365.5943298339844	3	365.248737	1092.72438	0.66427	0.00024262	-0.18239	-6.6616E-05	0.48189	0.00017601	365.24863727078395	45.204	0.50557	45.204	44.928	45.434	0					17	9	3	0	0	0	0.34064	2	15796	15796;15841		27.629	10.516	1	2988300			21190	9316	15336	15445	20772;20773	20772					0.18172805241692913
IGLSLPSVDL	10	Unmodified	_IGLSLPSVDL_					0	0	0			REV__ENST00000397642.3_1_1:247394123-247394771:+|nuORF	REV__ENST00000397642.3_1_1:247394123-247394771:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	507.6970520019531	2	507.297507	1012.58046	-0.64328	-0.00032633	0.19094	9.6864E-05	-0.45234	-0.00022947	507.2976790977253	93.123	1.0663	93.862	93.443	94.509	0.73902					46	20	3	0	0	0	0.40101	1	35614	35614		34.102	1.797	1	5914500	+		21191	24361	15337	15446	20774	20774					0.07467493900230693
IGLSNHVR	8	Unmodified	_IGLSNHVR_					0	0	0		ENSG00000122482|ENST00000337393|ZNF644;nc|ENSG00000122482|Q9H582-2|ZNF644	ENSG00000122482|ENST00000337393|ZNF644	ENSG00000122482|ENST00000337393|ZNF644	MULTI-MSMS	A375_MHC_IP_R1	1	448.65869140625	2	448.259051	894.503549	0.2748	0.00012318	0.074248	3.3282E-05	0.34905	0.00015646	448.25896400672946	126.68	1.5184	126.68	126.25	127.77	0					70	29	4	0	0	0	0.77797	1	48615	48615		2.3027	0	1	229190000			21192	3782	15338	15447	20775	20775					0.05207740194430244
IGLVLRTARER	11	Unmodified	_IGLVLRTARER_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MSMS	A375_MHC_IP_R1	1	642.511962890625	2	642.398953	1282.78335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.87	1	102.87	102.37	103.37	0								0	0	0	0.16279	1	37803	37803		4.1895	0.59301	1				21193	2365	15339	15448	20776	20776					0.15327236745383743
IGLVRVIPL	9	Unmodified	_IGLVRVIPL_					0	0	0		ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	MULTI-SECPEP	A375_MHC_IP_R2	2	490.73626708984375	2	490.33677	978.658987	-0.50887	-0.00024952	0.12665	6.21E-05	-0.38223	-0.00018742	490.3367935001329	108.65	0.55946	109.39	109.01	109.57	0.74684					14	10	2	0	0	0	0.75466	1	41047	41047		7.9102	0	1	1359100			21194	1820	15340	15449	20777	20777					0.16880390996004735
IGMLFAAK	8	Unmodified	_IGMLFAAK_					0	0	0			REV__ENSG00000144821|ENST00000693548|MYH15	REV__ENSG00000144821|ENST00000693548|MYH15	MULTI-MSMS	A375_MHC_IP_R1	1	425.6439514160156	2	425.746399	849.478245	-0.11644	-4.9573E-05	-1.5056	-0.000641	-1.622	-0.00069057	425.74533303069956	87.834	0.5095	87.834	87.542	88.052	0					13	9	2	0	0	0	0.76683	1	32303	32303		15.768	0	1	813010	+		21195	19448	15341	15450	20778	20778					0.04748549347618791
IGMMLLFSY	9	Unmodified	_IGMMLLFSY_					0	0	0			REV__ENST00000468355.5_1_20:4850526-4913271:-|nuORF	REV__ENST00000468355.5_1_20:4850526-4913271:-|nuORF	MSMS	A375_MHC_IP_R1	1	537.6844482421875	2	537.771757	1073.52896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.031	1	59.031	58.531	59.531	0								0	0	0	0.1521	1	21222	21222		18.135	4.6271	1		+		21196	25081	15342	15451	20779	20779					-0.004862893896643072
IGMYNCAH	8	Unmodified	_IGMYNCAH_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-SECPEP	A375_MHC_IP_R1	1	907.8781127929688	1	908.37532	907.368043	0.19267	0.00017501	-0.93466	-0.00084902	-0.74199	-0.00067401	908.375648862796	116.19	1.1704	116.19	115.53	116.7	0					36	22	3	0	0	0	0.972	1	42496	42496		2.5775	0	1	7511900			21197	3839	15343	15452	20780	20780					-0.08934618983062137
IGPAGWHRFW	10	Unmodified	_IGPAGWHRFW_					0	0	0		ENST00000580842.1_1_17:43663677-43664292:+|nuORF;nc|ENSG00000256453|Q8IYX4|DND1	ENST00000580842.1_1_17:43663677-43664292:+|nuORF	ENST00000580842.1_1_17:43663677-43664292:+|nuORF	MSMS	A375_MHC_IP_R1	1	409.6044921875	3	409.545442	1225.6145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.829	1	47.829	47.329	48.329	0								0	0	0	0.15438	1	16841	16841		6.6304	0.0069188	1				21198	13677	15344	15453	20781	20781					0.01071379902487024
IGPDGHKEV	9	Unmodified	_IGPDGHKEV_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-SECPEP	A375_MHC_IP_R1	1	475.660400390625	2	476.248349	950.482145	-0.47581	-0.0002266	0.49126	0.00023396	0.01545	7.3581E-06	476.24847773794073	53.631	0.35505	53.631	53.403	53.758	0					10	6	2	0	0	0	0.63327	1	19118	19118		18.146	7.3224	1	1735000			21199	7616	15345	15454	20782	20782					0.004923103750456903
IGPDGHKEV	9	Unmodified	_IGPDGHKEV_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-MSMS	A375_MHC_IP_R2	2	476.6479187011719	2	476.248349	950.482145	-1.0482	-0.00049922	0.84567	0.00040275	-0.20256	-9.6467E-05	476.24867009170464	52.89	0.45548	53.641	53.335	53.79	0.75105					14	8	2	0	0	0	0.53367	1	19977	19977		18.146	2.2992	1	2224300			21200	7616	15345	15454	20783	20783					0.004923103750456903
IGPGIHKLI	9	Unmodified	_IGPGIHKLI_					0	0	0			REV__ENST00000567559.1_1_16:77926320-77926647:+|nuORF	REV__ENST00000567559.1_1_16:77926320-77926647:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	474.70513916015625	2	474.30547	946.596387	-0.83953	-0.00039819	0.26281	0.00012465	-0.57673	-0.00027354	474.3055786053067	51.86	0.45978	52.613	52.372	52.831	0.75225					14	8	2	0	0	0	0.52144	1	19497	19497		23.148	2.2772	1	4141300	+		21201	24991	15346	15455	20784	20784					0.12095244927797921
IGPHTPKK	8	Unmodified	_IGPHTPKK_					0	0	0			REV__ENST00000559238.5_1_15:41060140-41072106:-|nuORF	REV__ENST00000559238.5_1_15:41060140-41072106:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	439.2944030761719	2	439.266345	876.518136	-0.58259	-0.00025591	0.13813	6.0677E-05	-0.44446	-0.00019524	439.2663910014294	38.45	4.2765	39.224	37.618	41.895	0.77451					273	83	4	0	0	0	0.68907	1	14711	14711		38.151	2.107	1	186450000	+		21202	26153	15347	15456	20785	20785					0.07493812342568162
IGPLVDKQIYR	11	Unmodified	_IGPLVDKQIYR_					0	0	0		nc|ENSG00000145934|Q9NT68-2|TENM2;ENSG00000145934|ENST00000518659|TENM2	nc|ENSG00000145934|Q9NT68-2|TENM2	nc|ENSG00000145934|Q9NT68-2|TENM2	MSMS	A375_MHC_IP_R2	2	434.59100341796875	3	434.590717	1300.75032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.825	1	61.57	61.07	62.07	0.74503								0	0	0	0.16275	1	23039	23039		4.4062	1.9714	1				21203	5593	15348	15457	20786	20786					0.11197609902660588
IGPYADRSL	9	Unmodified	_IGPYADRSL_					0	0	0			REV__nc|ENSG00000205176|Q8IX06|REXO1L1P	REV__nc|ENSG00000205176|Q8IX06|REXO1L1P	MULTI-SECPEP	A375_MHC_IP_R2	2	496.66314697265625	2	496.263999	990.513445	-0.84792	-0.00042079	-1.2138	-0.00060239	-2.0618	-0.0010232	496.2636823974359	58.908	0.66012	59.655	59.336	59.996	0.74714					27	12	3	0	0	0	0.3213	1	22271	22271		37.974	0	1	5583700	+		21204	27458	15349	15458	20787	20787					0.01780883409139733
IGQRIRNG	8	Unmodified	_IGQRIRNG_					0	0	0		SMPD3|p.E153K|1|0.22|ENSG00000103056|chr16:68371725-68371725|C/T|missense_variant;nc|ENSG00000103056|Q9NY59-2|SMPD3;ENSG00000103056|ENST00000219334|SMPD3	SMPD3|p.E153K|1|0.22|ENSG00000103056|chr16:68371725-68371725|C/T|missense_variant	SMPD3|p.E153K|1|0.22|ENSG00000103056|chr16:68371725-68371725|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	913.2285766601562	1	913.532624	912.525347	0.11445	0.00010455	-2.0902	-0.0019095	-1.9757	-0.0018049	913.5307886938788	127.95	0.35318	127.95	127.67	128.02	0					8	6	2	0	0	0	0.97144	1	49098	49098		14.582	0	1	26119000			21205	2416	15350	15459	20788	20788					0.06558544942993194
IGRGADYF	8	Unmodified	_IGRGADYF_					0	0	0		tr|U7SSM4|U7SSM4_FUSNUPeptidaseTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pepTPE=3SV=1	tr|U7SSM4|U7SSM4_FUSNUPeptidaseTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pepTPE=3SV=1	tr|U7SSM4|U7SSM4_FUSNUPeptidaseTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pepTPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	449.6738586425781	2	449.72451	897.434466	-0.43168	-0.00019414	0.19751	8.8825E-05	-0.23417	-0.00010531	449.7245589140008	44.876	0.46034	45.645	45.39	45.85	0.7691					13	8	3	0	0	0	0.75805	1	16726	16726		18.135	3.5533	1	1572100			21206	29640	15351	15460	20789	20789					-0.018353438251438092
IGRQRGGV	8	Unmodified	_IGRQRGGV_					0	0	0		ENST00000557815.1_1_15:70350845-70351103:-|nuORF	ENST00000557815.1_1_15:70350845-70351103:-|nuORF	ENST00000557815.1_1_15:70350845-70351103:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	422.151611328125	2	421.751393	841.488233	0.064785	2.7323E-05	0.17345	7.3152E-05	0.23823	0.00010048	421.7513987130628	102.43	1.0628	102.43	101.9	102.96	0					32	20	2	0	0	0	0.972	1	37810	37810		0.79363	0	1	2891100			21207	13459	15352	15461	20790	20790					0.06114873397245901
IGRRFSRHVE	10	Unmodified	_IGRRFSRHVE_					0	0	0			REV__KIF21A|p.S1318F|1|0.14|ENSG00000139116|chr12:39315235-39315235|G/A|missense_variant	REV__KIF21A|p.S1318F|1|0.14|ENSG00000139116|chr12:39315235-39315235|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	629.1702270507812	2	628.85217	1255.68979	-0.83785	-0.00052689	1.3606	0.00085564	0.52279	0.00032876	629.3543758243854	82.548	0.60732	83.291	82.94	83.547	0.74293					17	11	2	0	0	0	0.87163	1	31375	31375		9.3831	0	1	2449500	+		21208	26848	15353	15462	20791	20791					0.07216937362954923
IGRRLWRRRRG	11	Unmodified	_IGRRLWRRRRG_					0	0	0		GHSR|p.K238R|1|0.26|ENSG00000121853|chr3:172447701-172447701|T/C|missense_variant	GHSR|p.K238R|1|0.26|ENSG00000121853|chr3:172447701-172447701|T/C|missense_variant	GHSR|p.K238R|1|0.26|ENSG00000121853|chr3:172447701-172447701|T/C|missense_variant	MSMS	A375_MHC_IP_R1	1	741.389404296875	2	741.461076	1480.9076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.97	1	127.97	127.47	128.47	0								0	0	0	0.16331	1	49106	49106		1.4819	0	1				21209	14047	15354	15463	20792	20792					0.18638172076020965
IGSAALTILV	10	Unmodified	_IGSAALTILV_					0	0	0		nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8;nc|ENSG00000214655|A7E2V4-2|ZSWIM8;ENST00000433366.6_1_10:75557251-75561274:+|nuORF	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	MULTI-MSMS	A375_MHC_IP_R1	1	479.70245361328125	2	479.302593	956.590633	-0.6304	-0.00030215	0.61613	0.00029531	-0.014265	-6.8374E-06	479.30278546688714	90.405	0.55796	90.405	90.184	90.742	0					19	10	3	0	0	0	0.30274	1	33256	33256		39.957	3.8303	1	2014100			21210	9621	15355	15464	20793	20793					0.11060101625457719
IGSAEESWDSW	11	Unmodified	_IGSAEESWDSW_					0	0	0			REV__ENST00000506241.1_1_5:55251841-55256299:-|nuORF	REV__ENST00000506241.1_1_5:55251841-55256299:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	633.6659545898438	2	633.7673	1265.52005	-0.74163	-0.00047002	-0.29398	-0.00018631	-1.0356	-0.00065633	633.766881129888	79.802	0.56091	80.546	80.299	80.86	0.74474					14	10	2	0	0	0	0.98591	1	30335	30335		9.3831	0	1	1883400	+		21211	18772	15356	15465	20794	20794					-0.1020926822079673
IGSAPSGLIT	10	Unmodified	_IGSAPSGLIT_					0	0	0			REV__ENSG00000005339|ENST00000262367|CREBBP	REV__ENSG00000005339|ENST00000262367|CREBBP	MULTI-SECPEP	A375_MHC_IP_R1	1	458.6609191894531	2	458.260925	914.507297	-0.18605	-8.5261E-05	0.58578	0.00026844	0.39972	0.00018318	458.2611478354857	82.999	0.70742	82.999	82.622	83.329	0					22	13	2	0	0	0	0.42954	1	30386	30386		41.84	5.3334	1	2230500	+		21212	16120	15357	15466	20795	20795					0.04662365177614447
IGSCYNKYI	9	Unmodified	_IGSCYNKYI_					0	0	0		ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	MSMS	A375_MHC_IP_R1	1	530.65869140625	2	530.760235	1059.50592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.595	1	44.595	44.095	45.095	0								0	0	0	0.15131	1	15567	15567		19.439	1.2926	1				21213	8432	15358	15467	20796	20796					-0.02145592182796463
IGSDSQGRAT	10	Unmodified	_IGSDSQGRAT_					0	0	0		nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-3|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	MULTI-MSMS	A375_MHC_IP_R2	2	496.6916198730469	2	496.243795	990.473037	-0.31721	-0.00015741	2.8992	0.0014387	2.582	0.0012813	496.2472065791251	43.382	0.35481	44.155	44.028	44.383	0.7724					9	6	2	0	0	0	0.69306	1	16217	16217		13.906	0.86358	1	1128000			21214	1678	15359	15468	20797	20797					-0.022580829812909542
IGSELVQKY	9	Unmodified	_IGSELVQKY_					0	0	0		nc|ENSG00000161057|P35998-2|PSMC2;ENSG00000161057|ENST00000292644|PSMC2	nc|ENSG00000161057|P35998-2|PSMC2	nc|ENSG00000161057|P35998-2|PSMC2	MULTI-MSMS	A375_MHC_IP_R1	1	518.93603515625	2	518.787307	1035.56006	-0.66854	-0.00034683	0.56756	0.00029444	-0.10098	-5.2385E-05	518.7875391514654	80.797	1.5262	80.797	79.676	81.202	0					20	9	3	0	0	0	0.69674	1	29437	29437		7.2892	0.18751	1	6890500			21215	6463	15360	15469	20798	20798					0.043703232404368464
IGSFWLGR	8	Unmodified	_IGSFWLGR_					0	0	0			REV__ENST00000524558.5_1_11:75274226-75274610:+|nuORF	REV__ENST00000524558.5_1_11:75274226-75274610:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	468.1893615722656	2	468.25852	934.502486	-0.40369	-0.00018903	0.75222	0.00035223	0.34852	0.0001632	468.2589181992891	94.403	0.40593	95.147	94.969	95.375	0.74474					10	7	2	0	0	0	0.97144	1	35856	35856		14.582	0	1	762950	+		21216	25755	15361	15470	20799	20799					0.03261525825530498
IGSGIIAGV	9	Unmodified	_IGSGIIAGV_					0	0	0			REV__nc|ENSG00000260727|Q8MH63|SLC7A5P1	REV__nc|ENSG00000260727|Q8MH63|SLC7A5P1	MULTI-MSMS	A375_MHC_IP_R1	1	787.4668579101562	1	786.47198	785.464704	-0.038331	-3.0146E-05	0.0079248	6.2327E-06	-0.030406	-2.3914E-05	786.4719648321096	113.01	1.1642	113.01	112.64	113.8	0					54	22	4	0	0	0	0.010002	1	41400	41400		123.1	16.251	1	83983000	+		21217	27535	15362	15471	20800	20800					0.06339014840034451
IGSGIIAGV	9	Unmodified	_IGSGIIAGV_					0	0	0			REV__nc|ENSG00000260727|Q8MH63|SLC7A5P1	REV__nc|ENSG00000260727|Q8MH63|SLC7A5P1	MULTI-SECPEP	A375_MHC_IP_R2	2	787.224853515625	1	786.47198	785.464704	-0.78987	-0.00062121	0.40006	0.00031463	-0.38981	-0.00030658	786.4722210445306	112.01	1.1215	112.74	112.36	113.48	0.72458					55	21	4	0	0	0	0.0088186	1	42287	42287		137.59	0	1	85702000	+		21218	27535	15362	15471	20801	20801					0.06339014840034451
IGSGIIAGV	9	Unmodified	_IGSGIIAGV_					0	0	0			REV__nc|ENSG00000260727|Q8MH63|SLC7A5P1	REV__nc|ENSG00000260727|Q8MH63|SLC7A5P1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	786.47198	785.464704	-0.038331	-3.0146E-05	0.0079248	6.2327E-06	-0.030406	-2.3914E-05	786.4719648321096	113.01	1.1642	113.01	112.64	113.8	0	0.13733	-8.7747E-05	NaN	137.59	54	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83983000	+		21219	27535	15362	15471							0.06339014840034451
IGSGTGILL	9	Unmodified	_IGSGTGILL_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	A375_MHC_IP_R2	2	415.6539306640625	2	415.752736	829.490919	-0.17667	-7.3453E-05	2.7785	0.0011552	2.6018	0.0010817	415.752939037957	66.338	0.45984	67.075	66.729	67.189	0.73631					12	8	2	0	0	0	0.5339	1	25128	25128		18.135	4.6271	1	653650			21220	1290	15363	15472	20802	20802					0.06935284011524345
IGSILNSRNS	10	Unmodified	_IGSILNSRNS_					0	0	0			REV__tr|U7SX00|U7SX00_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01231PE=4SV=1	REV__tr|U7SX00|U7SX00_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01231PE=4SV=1	MSMS	A375_MHC_IP_R1	1	530.7112426757812	2	530.790912	1059.56727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.54	1	129.54	129.04	130.04	0								0	0	0	0.13854	1	49828	49828		30.637	2.1497	1		+		21221	28616	15364	15473	20803	20803					0.03987055840843823
IGSLGIVK	8	Unmodified	_IGSLGIVK_					0	0	0			REV__tr|U7STL3|U7STL3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01387PE=4SV=1	REV__tr|U7STL3|U7STL3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01387PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	394.157958984375	2	393.757821	785.501089	0.61746	0.00024313	-0.42566	-0.00016761	0.19181	7.5525E-05	393.7575635207813	44.954	0.55751	44.954	44.676	45.234	0					23	10	3	0	0	0	0.11032	1	15690	15690		104.8	0	1	9142600	+		21222	28496	15365	15474	20804	20804					0.09975891736746689
IGSLGIVK	8	Unmodified	_IGSLGIVK_					0	0	0			REV__tr|U7STL3|U7STL3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01387PE=4SV=1	REV__tr|U7STL3|U7STL3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01387PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	394.1578674316406	2	393.757821	785.501089	0.035149	1.384E-05	-0.10055	-3.9592E-05	-0.065399	-2.5751E-05	393.7577310010986	43.936	0.50483	44.706	44.48	44.985	0.76909					22	9	4	0	0	0	0.19796	1	16377	16377		92.822	7.4654	1	8406400	+		21223	28496	15365	15474	20805	20805					0.09975891736746689
IGSNLEQLGI	10	Unmodified	_IGSNLEQLGI_					0	0	0			REV__ENSG00000132376|ENST00000421807|INPP5K	REV__ENSG00000132376|ENST00000421807|INPP5K	MULTI-SECPEP	A375_MHC_IP_R1	1	522.6902465820312	2	522.290214	1042.56587	-0.3756	-0.00019617	0.3236	0.00016901	-0.051998	-2.7158E-05	522.2904730476769	53.821	1.8254	53.821	53.403	55.228	0					46	35	3	0	0	0	0.47386	1	19174	19174		47.749	16.48	1	3768100	+		21224	18648	15366	15475	20806	20806					0.04629421752088092
IGSPFLRAY	9	Unmodified	_IGSPFLRAY_					0	0	0		nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	MULTI-SECPEP	A375_MHC_IP_R1	1	512.6845703125	2	512.284734	1022.55492	-0.47456	-0.00024311	-0.25939	-0.00013288	-0.73394	-0.00037599	512.2846425731595	75.105	0.96205	75.105	74.502	75.464	0					41	18	4	0	0	0	0.16764	1	27341	27341		60.074	33.19	1	5299400			21225	3338	15367	15476	20807	20807					0.04454064168464811
IGSRLEHVYEQ	11	Unmodified	_IGSRLEHVYEQ_					0	0	0			REV__nc|ENSG00000147202|O60879-2|DIAPH2	REV__nc|ENSG00000147202|O60879-2|DIAPH2	MSMS	A375_MHC_IP_R1	1	444.26556396484375	3	444.229848	1329.66771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.657	1	23.657	23.157	24.157	0								0	0	0	0.15902	1	6542	6542		14.838	2.6103	1		+		21226	19577	15368	15477	20808	20808					0.016066681038864772
IGSSALLGL	9	Unmodified	_IGSSALLGL_					0	0	0			REV__ENST00000471538.1_1_1:16200631-16200724:+|nuORF	REV__ENST00000471538.1_1_1:16200631-16200724:+|nuORF	MSMS	A375_MHC_IP_R1	1	415.6539306640625	2	415.752736	829.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.37	1	67.37	66.87	67.87	0								0	0	0	0.14359	1	24412	24412		28.487	0	1		+		21227	25122	15369	15478	20809	20809					0.06935284011524345
IGSTSSSGHY	10	Unmodified	_IGSTSSSGHY_					0	0	0		nc|ENSG00000135913|Q86T82-2|USP37;ENSG00000135913|ENST00000258399|USP37	nc|ENSG00000135913|Q86T82-2|USP37	nc|ENSG00000135913|Q86T82-2|USP37	MULTI-SECPEP	A375_MHC_IP_R2	2	498.1636657714844	2	498.225071	994.435589	-0.50895	-0.00025357	0.98098	0.00048875	0.47203	0.00023518	498.2254863625034	76.461	0.65971	77.201	76.893	77.553	0.74052					20	12	2	0	0	0	0.76414	1	29134	29134		14.838	1.3304	1	2380400			21228	4726	15370	15479	20810	20810					-0.0618517424690026
IGSVESDHF	9	Unmodified	_IGSVESDHF_					0	0	0			REV__ENST00000369751.2_1_6:82901346-82950269:-|nuORF	REV__ENST00000369751.2_1_6:82901346-82950269:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	496.66021728515625	2	495.729989	989.445425	-0.75591	-0.00037473	-0.067071	-3.3249E-05	-0.82298	-0.00040798	495.7299255792478	58.202	1.0649	58.951	58.578	59.643	0.74895					57	20	4	0	0	0	0.55818	1	21919	21919		16.942	1.0951	1	33223000	+		21229	24014	15371	15480	20811	20811					-0.049719862415145144
IGSVFGQKQL	10	Unmodified	_IGSVFGQKQL_					0	0	0		nc|ENSG00000122512|P54278-2|PMS2;nc|ENSG00000122512|P54278-3|PMS2;ENSG00000122512|ENST00000265849|PMS2	nc|ENSG00000122512|P54278-2|PMS2	nc|ENSG00000122512|P54278-2|PMS2	MULTI-SECPEP	A375_MHC_IP_R1	1	538.683349609375	2	538.808574	1075.60259	-0.5142	-0.00027705	0.46815	0.00025225	-0.046045	-2.4809E-05	538.8089607739687	42.546	0.45408	42.546	42.336	42.79	0					15	8	3	0	0	0	0.64716	1	14724	14724		36.127	0	1	3180900			21230	3787	15372	15481	20812	20812					0.06781718368665679
IGTHGFWH	8	Unmodified	_IGTHGFWH_					0	0	0			REV__VWA3A|p.D688H|1|0.18|ENSG00000175267|chr16:22133089-22133089|G/C|missense_variant	REV__VWA3A|p.D688H|1|0.18|ENSG00000175267|chr16:22133089-22133089|G/C|missense_variant	MSMS	A375_MHC_IP_R1	1	477.6922607421875	2	477.732669	953.450785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.886	1	77.886	77.386	78.386	0								0	0	0	0.16876	1	28425	28425		6.3541	0	1		+		21231	28988	15373	15482	20813	20813					-0.027802178683941747
IGTLADALV	9	Unmodified	_IGTLADALV_					0	0	0		tr|U7SKJ2|U7SKJ2_FUSNUTraTcomplementresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02049PE=4SV=1	tr|U7SKJ2|U7SKJ2_FUSNUTraTcomplementresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02049PE=4SV=1	tr|U7SKJ2|U7SKJ2_FUSNUTraTcomplementresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02049PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	872.2969970703125	1	872.50876	871.501483	-0.50549	-0.00044105	-0.73032	-0.00063721	-1.2358	-0.0010783	872.5079805276217	104.42	1.4233	105.18	104.75	106.17	0.76308					60	27	4	0	0	0	0.042197	1	39481	39481		67.344	9.8725	1	44197000			21232	29474	15374	15483	20814	20814					0.0605926666595451
IGTNGEISY	9	Unmodified	_IGTNGEISY_					0	0	0		ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	MULTI-MSMS	A375_MHC_IP_R2	2	477.6320495605469	2	477.232364	952.450176	-0.59969	-0.00028619	0.49936	0.00023831	-0.10033	-4.7879E-05	477.23264012519587	74.858	0.6076	75.595	75.365	75.973	0.73752					19	11	2	0	0	0	0.12592	1	28447	28447		46.021	0	1	1377800			21233	3114	15375	15484	20815	20815					-0.02795102098764346
IGTNGEISY	9	Unmodified	_IGTNGEISY_					0	0	0		ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	MULTI-MATCH	A375_MHC_IP_R1	1		2	477.232364	952.450176	-0.50529	-0.00024114	-0.19851	-9.4735E-05	-0.7038	-0.00033588	477.232240048927	75.556	0.40186	75.556	75.362	75.764	0	-0.019404	-0.00041071	NaN	46.021	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1357900			21234	3114	15375	15484							-0.02795102098764346
IGTNSGLEE	9	Unmodified	_IGTNSGLEE_					0	0	0			REV__ENSG00000135919|ENST00000409304|SERPINE2	REV__ENSG00000135919|ENST00000409304|SERPINE2	MULTI-SECPEP	A375_MHC_IP_R1	1	460.6219177246094	2	460.221997	918.429441	0.1159	5.334E-05	-0.49223	-0.00022654	-0.37633	-0.0001732	460.2217963875525	48.314	0.55744	48.314	48.071	48.629	0					22	10	3	0	0	0	0.65246	1	17046	17046		6.7232	0	1	2975800	+		21235	15735	15376	15485	20816	20816					-0.033036924784141775
IGTRKSKEF	9	Unmodified	_IGTRKSKEF_					0	0	0		ENST00000485752.1_1_2:101888144-101889379:-|nuORF;ENST00000424632.5_1_2:101888144-101889745:-|nuORF	ENST00000485752.1_1_2:101888144-101889379:-|nuORF	ENST00000485752.1_1_2:101888144-101889379:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	355.9294738769531	3	355.873224	1064.59784	-0.02016	-7.1745E-06	0.088487	3.149E-05	0.068327	2.4316E-05	355.87323029964335	38.552	0.6139	38.552	38.268	38.882	0					27	11	4	0	0	0	0.63811	1	13049	13049		8.1555	0	1	29574000			21236	11777	15377	15486	20817	20817					0.06812834225888764
IGTSSVARAW	10	Unmodified	_IGTSSVARAW_					0	0	0		ENSG00000139514|ENST00000380752|SLC7A1;ENSG00000003989|ENST00000494857|SLC7A2;nc|ENSG00000003989|P52569-2|SLC7A2;nc|ENSG00000003989|P52569-3|SLC7A2	ENSG00000139514|ENST00000380752|SLC7A1;ENSG00000003989|ENST00000494857|SLC7A2	ENSG00000139514|ENST00000380752|SLC7A1	MSMS	A375_MHC_IP_R2	2	524.20263671875	2	524.282723	1046.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.921	1	48.682	48.182	49.182	0.76128								0	0	0	0.14628	1	17983	17983		24.882	6.7466	1				21237	5082;862	15378	15487	20818	20818					0.02947974674748366
IGTVSLVRYL	10	Unmodified	_IGTVSLVRYL_					0	0	0			REV__ENSG00000197056|ENST00000359858|ZMYM1	REV__ENSG00000197056|ENST00000359858|ZMYM1	MULTI-SECPEP	A375_MHC_IP_R1	1	561.2217407226562	2	560.839874	1119.66519	-0.50547	-0.00028349	-0.77304	-0.00043355	-1.2785	-0.00071704	560.8397107019421	59.168	0.2539	59.168	59.041	59.295	0					5	4	2	0	0	0	0.87163	1	21282	21282		9.3831	0	1	711810	+		21238	22250	15379	15488	20819	20819					0.11014864436833705
IGVRHPNII	9	Unmodified	_IGVRHPNII_					0	0	0		nc|ENSG00000197530|Q96AX9-8|MIB2;nc|ENSG00000197530|Q96AX9-6|MIB2;nc|ENSG00000197530|Q96AX9-3|MIB2;ENSG00000197530|ENST00000355826|MIB2;nc|ENSG00000197530|Q96AX9-9|MIB2;ENST00000511502.5_1_1:1550926-1563560:+|nuORF;ENST00000507229.5_1_1:1551767-1563881:+|nuORF;nc|ENSG00000197530|Q96AX9-10|MIB2;nc|ENSG00000197530|Q96AX9-4|MIB2;nc|ENSG00000197530|Q96AX9-5|MIB2;ENST00000508455.1_1_1:1558985-1559326:+|nuORF	nc|ENSG00000197530|Q96AX9-8|MIB2	nc|ENSG00000197530|Q96AX9-8|MIB2	MULTI-SECPEP	A375_MHC_IP_R1	1	510.2111511230469	2	509.811451	1017.60835	-0.42843	-0.00021842	-0.03764	-1.9189E-05	-0.46607	-0.00023761	509.8112780084363	46.298	0.40109	46.298	46.094	46.495	0					16	7	3	0	0	0	0.52144	1	16234	16234		11.64	0	1	2973100			21239	9166	15380	15489	20820	20820					0.10024861670990504
IGVRPTLLSGH	11	Unmodified	_IGVRPTLLSGH_					0	0	0			REV__BCL11A|p.P206L|1|0.41|ENSG00000119866|chr2:60462295-60462295|G/A|missense_variant	REV__BCL11A|p.P206L|1|0.41|ENSG00000119866|chr2:60462295-60462295|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	384.60833740234375	3	383.89614	1148.66659	0.27982	0.00010742	0.075659	2.9045E-05	0.35548	0.00013647	383.89621478767253	34.076	1.52	34.076	33.698	35.218	0					75	29	5	0	0	0	0.68072	1	11182	11182		17.049	0.4827	1	239410000	+		21240	15501	15381	15490	20821	20821					0.09820498525618859
IGVSTHNCC	9	Unmodified	_IGVSTHNCC_					0	0	0		ENST00000545764.1_1_6:160208906-160209185:-|nuORF;ENST00000536607.1_1_6:160208906-160210500:-|nuORF	ENST00000545764.1_1_6:160208906-160209185:-|nuORF	ENST00000545764.1_1_6:160208906-160209185:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	933.2429809570312	1	933.391698	932.384421	-0.25684	-0.00023973	-0.87758	-0.00081913	-1.1344	-0.0010589	933.3916024186452	32.789	0.65639	32.789	32.383	33.04	0					24	12	3	0	0	0	0.60101	1	10582	10582		14.838	3.198	1	5223900			21241	13239	15382	15491	20822	20822					-0.08447537816971362
IGVSTHNCC	9	Unmodified	_IGVSTHNCC_					0	0	0		ENST00000545764.1_1_6:160208906-160209185:-|nuORF;ENST00000536607.1_1_6:160208906-160210500:-|nuORF	ENST00000545764.1_1_6:160208906-160209185:-|nuORF	ENST00000545764.1_1_6:160208906-160209185:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	933.391698	932.384421	-0.26475	-0.00024712	-0.27361	-0.00025539	-0.53836	-0.0005025	933.3916371368059	32.013	0.76143	32.75	32.35	33.112	0.73691	-0.019616	0.0002206	NaN	14.838	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5780400			21242	13239	15382	15491							-0.08447537816971362
IGVVRHFIKRL	11	Unmodified	_IGVVRHFIKRL_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2;REV__FSIP2|p.T6548Lfs*12|1|0.3|ENSG00000188738|chr2:185808944-185808944|A/-|frameshift_variant	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	A375_MHC_IP_R2	2	447.0216064453125	3	446.622463	1336.84556	-0.71676	-0.00032012	-0.94849	-0.00042362	-1.6652	-0.00074374	446.62199009489336	33.44	0.35612	34.192	33.942	34.298	0.75225					15	6	3	0	0	0	0.73881	1	12007	12007		0.50596	0.09769	1	2875600	+		21243	22110;26655	15383	15492	20823	20823					0.19061007884329229
IGWDKHYGF	9	Unmodified	_IGWDKHYGF_					0	0	0		ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	375.2505798339844	3	374.85042	1121.52943	0.36331	0.00013619	-0.1311	-4.9143E-05	0.23221	8.7045E-05	374.85023773574204	61.839	0.66341	61.839	61.585	62.249	0					20	12	3	0	0	0	0.4867	1	22314	22314		19.362	11.206	1	2403700			21244	1168	15384	15493	20824	20824					-0.026474103539840144
IGWDKHYGF	9	Unmodified	_IGWDKHYGF_					0	0	0		ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	375.25006103515625	3	374.85042	1121.52943	0.0091194	3.4184E-06	-0.14073	-5.2752E-05	-0.13161	-4.9333E-05	374.8502560485925	61.162	0.60572	61.907	61.566	62.172	0.74503					25	11	3	0	0	0	0.59614	1	23181	23181		22.658	19.663	1	2802200			21245	1168	15384	15493	20825	20825					-0.026474103539840144
IGYARQYVY	9	Unmodified	_IGYARQYVY_					0	0	0		nc|ENSG00000125885|Q9UJA3-2|MCM8;nc|ENSG00000125885|Q9UJA3-3|MCM8;ENSG00000125885|ENST00000610722|MCM8;nc|ENSG00000125885|Q9UJA3-4|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	MULTI-SECPEP	A375_MHC_IP_R1	1	567.168701171875	2	566.792924	1131.57129	0.095497	5.4127E-05	-1.5219	-0.0008626	-1.4264	-0.00080847	567.2929132824665	49.26	0.30536	49.26	49.134	49.439	0					8	5	2	0	0	0	0.50702	1	17441	17441		25.399	10.818	1	859060			21246	4005	15385	15494	20826	20826					0.01077145334556917
IGYARQYVY	9	Unmodified	_IGYARQYVY_					0	0	0		nc|ENSG00000125885|Q9UJA3-2|MCM8;nc|ENSG00000125885|Q9UJA3-3|MCM8;ENSG00000125885|ENST00000610722|MCM8;nc|ENSG00000125885|Q9UJA3-4|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	MULTI-SECPEP	A375_MHC_IP_R2	2	567.1692504882812	2	566.792924	1131.57129	-0.42422	-0.00024045	-1.6737	-0.00094864	-2.0979	-0.0011891	566.7920573531899	48.57	0.2539	49.328	49.18	49.434	0.75737					7	4	2	0	0	0	0.47368	1	18257	18257		26.884	1.4843	1	792530			21247	4005	15385	15494	20827	20827					0.01077145334556917
IGYDRSRRKYW	11	Unmodified	_IGYDRSRRKYW_					0	0	0		nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	MULTI-MSMS	A375_MHC_IP_R2	2	500.99920654296875	3	500.600386	1498.77933	-0.80967	-0.00040532	1.0977	0.00054953	0.28807	0.00014421	500.9355486631124	54.417	0.55643	55.168	54.865	55.422	0.75075					36	10	4	0	0	0	0.73439	1	20510	20510		4.7159	0.30977	1	12142000			21248	7623	15386	15495	20828	20828					0.049891472516492286
IGYERDAV	8	Unmodified	_IGYERDAV_					0	0	0			REV__GRID2|p.G769E|2|0.35|ENSG00000152208|chr4:93626381-93626381|G/A|missense_variant	REV__GRID2|p.G769E|2|0.35|ENSG00000152208|chr4:93626381-93626381|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	462.13494873046875	2	461.735074	921.455596	-0.52582	-0.00024279	0.21052	9.7204E-05	-0.31531	-0.00014559	461.73516627089	36.567	0.6079	36.567	36.287	36.895	0					32	11	5	0	0	0	0.86765	1	12249	12249		32.117	0	1	20689000	+		21249	26708	15387	15496	20829	20829					-0.00827378516294175
IGYFGRIV	8	Unmodified	_IGYFGRIV_					0	0	0			REV__ENST00000497393.1_1_3:120469390-120469879:+|nuORF	REV__ENST00000497393.1_1_3:120469390-120469879:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	463.16900634765625	2	462.76872	923.522887	0.027141	1.256E-05	-0.44145	-0.00020429	-0.41431	-0.00019173	462.7683831856212	108.64	0.50571	108.64	108.46	108.97	0					15	9	2	0	0	0	0.93416	1	39901	39901		20.871	0	1	1535700	+		21250	19847	15388	15497	20830	20830					0.05806696485319662
IGYFVANTV	9	Unmodified	_IGYFVANTV_					0	0	0			REV__ENST00000485781.5_1_2:63816129-63824744:+|nuORF	REV__ENST00000485781.5_1_2:63816129-63824744:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	492.66375732421875	2	492.263468	982.512382	-0.18768	-9.2387E-05	0.091919	4.5248E-05	-0.09576	-4.7139E-05	492.26347646907516	79.086	0.55938	79.086	78.859	79.418	0					23	10	3	0	0	0	0.52144	1	28838	28838		11.64	0	1	5915400	+		21251	25313	15389	15498	20831	20831					0.020426690402246095
IGYHEAELY	9	Unmodified	_IGYHEAELY_					0	0	0			REV__PKHD1|p.H459Y|2|0.42|ENSG00000170927|chr6:52058460-52058460|G/A|missense_variant	REV__PKHD1|p.H459Y|2|0.42|ENSG00000170927|chr6:52058460-52058460|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	548.2289428710938	2	547.761289	1093.50803	-0.72246	-0.00039573	-0.13422	-7.352E-05	-0.85668	-0.00046925	547.7612088999969	104.73	0.91588	105.49	105.11	106.02	0.76308					40	17	3	0	0	0	0.13491	1	39612	39612		44.407	4.4497	1	9293200	+		21252	27787	15390	15499	20832	20832					-0.034988401733244245
IGYQVKNV	8	Unmodified	_IGYQVKNV_					0	0	0			REV__ENSG00000113048|ENST00000261413|MRPS27	REV__ENSG00000113048|ENST00000261413|MRPS27	MULTI-MSMS	A375_MHC_IP_R2	2	460.68414306640625	2	460.763635	919.512717	-0.62072	-0.000286	-2.4125	-0.0011116	-3.0332	-0.0013976	460.76232317282836	66.157	0.25427	66.896	66.731	66.985	0.73812					6	4	2	0	0	0	0.75322	1	25075	25075		19.439	4.6007	1	437330	+		21253	17765	15391	15500	20833	20833					0.04974088760093309
IGYVDTTHW	9	Unmodified	_IGYVDTTHW_					0	0	0		nc|nan|Q6UWU4-3|C6orf89;ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-2|C6orf89	nc|nan|Q6UWU4-3|C6orf89	nc|nan|Q6UWU4-3|C6orf89	MULTI-MSMS	A375_MHC_IP_R1	1	546.6612548828125	2	546.261456	1090.50836	-0.25765	-0.00014074	-0.30277	-0.00016539	-0.56042	-0.00030614	546.2612362566315	70.088	0.71182	70.088	69.782	70.494	0					29	13	3	0	0	0	0.026461	2	25420	25420;25464		77.984	39.833	1	5531700			21254	9296	15392	15501	20834;20835	20834					-0.03327420453479135
IGYVDTTHW	9	Unmodified	_IGYVDTTHW_					0	0	0		nc|nan|Q6UWU4-3|C6orf89;ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-2|C6orf89	nc|nan|Q6UWU4-3|C6orf89	nc|nan|Q6UWU4-3|C6orf89	MULTI-MSMS	A375_MHC_IP_R2	2	546.6610717773438	2	546.261456	1090.50836	-0.70232	-0.00038365	-0.47139	-0.0002575	-1.1737	-0.00064115	546.2612697496793	69.418	0.76274	70.152	69.879	70.642	0.73421					26	14	3	0	0	0	0.0091485	1	26292	26292		101.72	54.801	1	4054600			21255	9296	15392	15501	20836	20836					-0.03327420453479135
IHAELKNNPK	10	Unmodified	_IHAELKNNPK_					0	0	0			REV__ENST00000467629.1_1_10:106054804-106059039:+|nuORF	REV__ENST00000467629.1_1_10:106054804-106059039:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	388.9277038574219	3	388.555895	1162.64586	-0.12344	-4.7963E-05	0.20384	7.9204E-05	0.080403	3.1241E-05	388.5559718418668	27.241	0.81232	27.92	27.69	28.502	0.67857					39	15	4	0	0	0	0.70972	1	9388	9388		7.9454	2.162	1	70965000	+		21256	25059	15393	15502	20837	20837					0.07103908145927562
IHAILLPQ	8	Unmodified	_IHAILLPQ_					0	0	0		ENST00000588552.5_1_19:5159112-5286160:-|nuORF	ENST00000588552.5_1_19:5159112-5286160:-|nuORF	ENST00000588552.5_1_19:5159112-5286160:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	453.18438720703125	2	452.78437	903.554188	-0.63715	-0.00028849	0.10522	4.764E-05	-0.53193	-0.00024085	452.784370926245	59.599	0.4035	60.346	60.098	60.501	0.74714					13	7	2	0	0	0	0.58504	1	22544	22544		42.968	14.795	1	1459300			21257	13765	15394	15503	20838	20838					0.09855269519414378
IHASDLMPV	9	Unmodified	_IHASDLMPV_					0	0	0			REV__ENST00000479399.5_1_9:34616009-34616228:-|nuORF	REV__ENST00000479399.5_1_9:34616009-34616228:-|nuORF	MSMS	A375_MHC_IP_R2	2	491.6716613769531	2	491.754953	981.495352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.433	1	64.173	63.673	64.673	0.74022								0	0	0	0.11948	1	24046	24046		36.044	5.8194	1		+		21258	18985	15395	15504	20839	20839					0.0038642516278741823
IHASQQRWQQL	11	Unmodified	_IHASQQRWQQL_					0	0	0		ENST00000486276.1_1_13:50100422-50102798:+|nuORF;nc|ENSG00000136147|Q9UIL8-2|PHF11;ENSG00000136147|ENST00000378319|PHF11	ENST00000486276.1_1_13:50100422-50102798:+|nuORF	ENST00000486276.1_1_13:50100422-50102798:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	465.0817565917969	3	465.581103	1393.72148	-0.99464	-0.00046308	-0.33309	-0.00015508	-1.3277	-0.00061816	465.9152814583018	38.631	0.30611	39.406	39.25	39.556	0.77451					11	5	3	0	0	0	1.0002	1	14286	14286		1.3296	0.11481	1	1536300			21259	4757	15396	15505	20840	20840					0.040368853262407356
IHDAFDFEI	9	Unmodified	_IHDAFDFEI_					0	0	0		nc|ENSG00000074803|Q13621-3|SLC12A1;ENSG00000074803|ENST00000380993|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	MSMS	A375_MHC_IP_R2	2	553.6845703125	2	553.761289	1105.50803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.397	1	40.172	39.672	40.672	0.77451								0	0	0	0.15283	1	14543	14543		16.942	2.104	1				21260	1594	15397	15506	20841	20841					-0.04050840173340475
IHDCSDKFE	9	Unmodified	_IHDCSDKFE_					0	0	0		ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	MULTI-SECPEP	A375_MHC_IP_R1	1	546.7260131835938	2	547.234581	1092.45461	-0.58582	-0.00032058	0.55204	0.0003021	-0.033773	-1.8482E-05	547.7373224793591	59.047	0.25587	59.047	58.836	59.092	0					7	4	2	0	0	0	0.76187	1	21157	21157		3.9444	1.6417	1	1772000			21261	6153	15398	15507	20842	20842					-0.08791960947519328
IHDERWKI	8	Unmodified	_IHDERWKI_					0	0	0			REV__IL1RL1|p.T509I|1|0.4|ENSG00000115602|chr2:102351776-102351776|C/T|missense_variant	REV__IL1RL1|p.T509I|1|0.4|ENSG00000115602|chr2:102351776-102351776|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	366.6448059082031	3	366.201452	1095.58253	-0.12517	-4.5839E-05	-0.23634	-8.6549E-05	-0.36152	-0.00013239	366.2014337515817	35.295	1.5226	36.059	35.727	37.25	0.76338					33	29	2	0	0	0	0.88799	1	13266	13266		15.847	7.6917	1	2567700	+		21262	17897	15399	15508	20843	20843					0.03855967428717122
IHDFEKGMT	9	Unmodified	_IHDFEKGMT_					0	0	0		nc|ENSG00000078596|O43736-2|ITM2A;ENST00000469541.5_1_X:78616588-78622401:-|nuORF;ENSG00000078596|ENST00000373298|ITM2A	nc|ENSG00000078596|O43736-2|ITM2A	nc|ENSG00000078596|O43736-2|ITM2A	MULTI-SECPEP	A375_MHC_IP_R1	1	360.23919677734375	3	359.839303	1076.49608	-0.12957	-4.6625E-05	3.8579	0.0013882	3.7284	0.0013416	359.8392684267748	39.715	0.60948	39.715	39.491	40.1	0					36	11	5	0	0	0	0.76187	1	13609	13609		7.609	3.4194	1	11027000			21263	1675	15400	15509	20844	20844					-0.03910780188175522
IHDIAEEVNEP	11	Unmodified	_IHDIAEEVNEP_					0	0	0			REV__nc|ENSG00000115677|Q00341-2|HDLBP	REV__nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MSMS	A375_MHC_IP_R2	2	634.2492065429688	2	633.304049	1264.59355	-0.67077	-0.0004248	-0.23525	-0.00014898	-0.90601	-0.00057378	633.3038159455386	47.704	0.75895	48.466	48.225	48.984	0.76128					31	14	3	0	0	0	0.73078	1	17868	17868		8.1555	0	1	5653400	+		21264	17905	15401	15510	20845	20845					-0.02816719778343213
IHDKFDEISS	10	Unmodified	_IHDKFDEISS_					0	0	0			REV__ENSG00000061676|ENST00000361354|NCKAP1	REV__ENSG00000061676|ENST00000361354|NCKAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	397.2755126953125	3	397.527782	1189.56152	-0.018356	-7.2971E-06	-0.27295	-0.00010851	-0.29131	-0.0001158	397.5272697792397	27.429	0.40791	28.108	27.792	28.2	0.67857					15	7	3	0	0	0	0.93194	1	9242	9242		3.0723	0	1	1514800	+		21265	16450	15402	15511	20846	20846					-0.025680874614636195
IHDLKLHHPS	10	Unmodified	_IHDLKLHHPS_					0	0	0		GRIN3A|p.P783L|1|0.38|ENSG00000198785|chr9:101670064-101670064|G/A|missense_variant	GRIN3A|p.P783L|1|0.38|ENSG00000198785|chr9:101670064-101670064|G/A|missense_variant	GRIN3A|p.P783L|1|0.38|ENSG00000198785|chr9:101670064-101670064|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	400.28021240234375	3	399.556007	1195.64619	-0.2502	-9.9967E-05	-0.12604	-5.0359E-05	-0.37623	-0.00015033	399.55597977950436	34.486	1.3655	34.486	33.445	34.81	0					39	26	2	0	0	0	0.91556	1	11297	11297		3.3196	0	1	1408500			21266	14085	15403	15512	20847	20847					0.05619327865792911
IHDQTSPNPKY	11	Unmodified	_IHDQTSPNPKY_					0	0	0		ENSG00000100075|ENST00000215882|SLC25A1	ENSG00000100075|ENST00000215882|SLC25A1	ENSG00000100075|ENST00000215882|SLC25A1	MULTI-MSMS	A375_MHC_IP_R1	1	434.28240966796875	3	433.882448	1298.62551	-0.23051	-0.00010002	0.50967	0.00022114	0.27916	0.00012112	433.88261821792105	23.252	0.70965	23.252	22.773	23.483	0					29	13	3	0	0	0	0.60848	1	6353	6353		14.171	3.1054	1	32960000			21267	2110	15404	15513	20848	20848					-0.011853073045131168
IHDQTSPNPKY	11	Unmodified	_IHDQTSPNPKY_					0	0	0		ENSG00000100075|ENST00000215882|SLC25A1	ENSG00000100075|ENST00000215882|SLC25A1	ENSG00000100075|ENST00000215882|SLC25A1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	433.882448	1298.62551	-0.23051	-0.00010002	0.50967	0.00022114	0.27916	0.00012112	433.88261821792105	23.252	0.70965	23.252	22.773	23.483	0	0	0	NaN	14.171	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32960000			21268	2110	15404	15513							-0.011853073045131168
IHEHKEVQK	9	Unmodified	_IHEHKEVQK_					0	0	0			REV__nc|ENSG00000095627|Q9BXT4-4|TDRD1	REV__nc|ENSG00000095627|Q9BXT4-4|TDRD1	MULTI-SECPEP	A375_MHC_IP_R2	2	383.9187927246094	3	383.212128	1146.61456	-0.33332	-0.00012773	-2.0548	-0.00078742	-2.3881	-0.00091516	383.2113778279691	38.913	0.66547	39.688	39.401	40.067	0.77451					30	12	4	0	0	0	0.74875	1	14245	14245		10.8	6.2706	1	1792100	+		21269	16997	15405	15514	20849	20849					0.04711335111846893
IHEPFVKNPD	10	Unmodified	_IHEPFVKNPD_					0	0	0			REV__ENSG00000198954|ENST00000361983|KIFBP	REV__ENSG00000198954|ENST00000361983|KIFBP	MULTI-SECPEP	A375_MHC_IP_R1	1	399.6083068847656	3	399.208384	1194.60332	-0.2966	-0.00011841	0.12213	4.8754E-05	-0.17448	-6.9653E-05	399.20840840938916	40.978	0.60557	40.978	40.66	41.266	0					23	11	3	0	0	0	0.89761	1	14113	14113		10.899	10.899	1	3989700	+		21270	22457	15406	15515	20850	20850					0.013805130177161118
IHFGRELQ	8	Unmodified	_IHFGRELQ_					0	0	0		ENSG00000010017|ENST00000011619|RANBP9;ENST00000469916.1_1_6:13622596-13632772:-|nuORF;nc|ENSG00000010017|Q96S59-2|RANBP9;nc|ENSG00000010017|Q96S59-3|RANBP9	ENSG00000010017|ENST00000011619|RANBP9	ENSG00000010017|ENST00000011619|RANBP9	MSMS	A375_MHC_IP_R1	1	500.27423095703125	2	500.272158	998.529764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.616	1	37.616	37.116	38.116	0								0	0	0	0.16876	1	12694	12694		8.5933	0	1				21271	972	15407	15516	20851	20851					0.030440093659080958
IHFIIKRM	8	Unmodified	_IHFIIKRM_					0	0	0		ENSG00000006704|ENST00000424337|GTF2IRD1;nc|ENSG00000006704|Q9UHL9|GTF2IRD1;nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1;GTF2IRD1|p.F427L|1|0.25|ENSG00000006704|chr7:74535117-74535117|T/C|missense_variant	ENSG00000006704|ENST00000424337|GTF2IRD1	ENSG00000006704|ENST00000424337|GTF2IRD1	MULTI-MSMS	A375_MHC_IP_R2	2	353.6168518066406	3	353.216157	1056.62664	-0.53184	-0.00018786	0.40732	0.00014387	-0.12452	-4.3982E-05	353.217037751324	54.116	0.86559	54.867	54.454	55.32	0.75105					39	16	4	0	0	0	0.7479	2	20453	20453;20480		15.847	5.0233	1	2923800			21272	925	15408	15517	20852;20853	20852					0.10059280321343067
IHGGGTGIWL	10	Unmodified	_IHGGGTGIWL_					0	0	0			REV__ENST00000479187.5_1_12:40692272-40758932:+|nuORF	REV__ENST00000479187.5_1_12:40692272-40758932:+|nuORF	MSMS	A375_MHC_IP_R2	2	505.68115234375	2	505.774534	1009.53451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.49	1	54.242	53.742	54.742	0.75105								0	0	0	0.15283	1	20186	20186		11.64	0.52583	1		+		21273	22123	15409	15518	20854	20854					0.03012893508673642
IHGHNQIIT	9	Unmodified	_IHGHNQIIT_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-2|PCNX2;ENST00000324142.4_1_1:233337898-233388268:-|nuORF;nc|ENSG00000135749|A6NKB5-5|PCNX2;ENST00000475463.6_1_1:233201380-233353905:-|nuORF	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MULTI-SECPEP	A375_MHC_IP_R2	2	516.6973876953125	2	516.78289	1031.55123	-0.92586	-0.00047847	-1.406	-0.00072661	-2.3319	-0.0012051	516.7818426633013	36.291	0.55988	37.062	36.749	37.308	0.7709					14	10	2	0	0	0	0.69504	1	13110	13110		12.532	10.033	1	1795800			21274	4709	15410	15519	20855	20855					0.03671394394609706
IHGHNQIIT	9	Unmodified	_IHGHNQIIT_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-2|PCNX2;ENST00000324142.4_1_1:233337898-233388268:-|nuORF;nc|ENSG00000135749|A6NKB5-5|PCNX2;ENST00000475463.6_1_1:233201380-233353905:-|nuORF	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MULTI-MATCH	A375_MHC_IP_R1	1		2	516.78289	1031.55123	-0.5045	-0.00026072	-1.2471	-0.00064449	-1.7516	-0.00090521	516.7818756454723	37.195	0.45665	37.195	36.945	37.402	0	0.066417	4.0782E-05	NaN	12.532	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1587100			21275	4709	15410	15519							0.03671394394609706
IHGPWDEA	8	Unmodified	_IHGPWDEA_					0	0	0		ENSG00000135845|ENST00000344529|PIGC	ENSG00000135845|ENST00000344529|PIGC	ENSG00000135845|ENST00000344529|PIGC	MULTI-SECPEP	A375_MHC_IP_R2	2	463.16070556640625	2	462.714142	923.413731	-0.68487	-0.0003169	0.077644	3.5927E-05	-0.60723	-0.00028097	462.71409324257036	51.326	0.30464	52.078	51.864	52.169	0.75225					8	5	2	0	0	0	0.972	1	19303	19303		5.7604	0	1	1199000			21276	4721	15411	15520	20856	20856					-0.051039342048056824
IHHNTHLCF	9	Unmodified	_IHHNTHLCF_					0	0	0		ENST00000582788.5_1_17:37856514-37872404:+|nuORF;nc|ENSG00000141736|P04626-6|ERBB2;nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2	ENST00000582788.5_1_17:37856514-37872404:+|nuORF	ENST00000582788.5_1_17:37856514-37872404:+|nuORF	MSMS	A375_MHC_IP_R1	1	374.43359375	3	374.515154	1120.52363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.749	1	39.749	39.249	40.249	0								0	0	0	0.15486	1	13613	13613		2.9952	0	1				21277	5270	15412	15521	20857	20857					-0.03180832137263678
IHHSTWSIF	9	Unmodified	_IHHSTWSIF_					0	0	0			REV__ENST00000511525.1_1_5:43446326-43483989:-|nuORF	REV__ENST00000511525.1_1_5:43446326-43483989:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1128.1873779296875	1	1127.56326	1126.55598	0.31633	0.00035668	3.8778	0.0043725	4.1941	0.0047291	1128.5674254679225	140.23	0.25539	140.27	140.2	140.45	0.04216					6	4	2	0	0	0	0.6898	1	54960	54960		7.9102	0.62092	1	1493800	+		21278	19782	15413	15522	20858	20858					-0.002237214626120476
IHIGEKTLEF	10	Unmodified	_IHIGEKTLEF_					0	0	0		ENSG00000188629|ENST00000683217|ZNF177	ENSG00000188629|ENST00000683217|ZNF177	ENSG00000188629|ENST00000683217|ZNF177	MULTI-SECPEP	A375_MHC_IP_R2	2	594.2268676757812	2	593.826963	1185.63937	-0.4838	-0.0002873	0.30047	0.00017843	-0.18334	-0.00010887	593.8271741277586	89.278	0.45034	90.01	89.735	90.186	0.7318					15	8	2	0	0	0	0.93194	1	34000	34000		9.3831	4.0862	1	2681400			21279	8918	15414	15523	20859	20859					0.05397970194553636
IHIQDVGG	8	Unmodified	_IHIQDVGG_					0	0	0			REV__ENST00000599159.1_1_19:40329665-40336940:-|nuORF	REV__ENST00000599159.1_1_19:40329665-40336940:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	420.6268615722656	2	419.72451	837.434466	-0.034253	-1.4377E-05	0.91601	0.00038447	0.88175	0.00037009	419.72379379612187	102.12	2.446	102.88	101.14	103.58	0.76428					116	47	3	0	0	0	0.77717	1	38629	38629		5.2307	0.47466	1	3122000	+		21280	17360	15415	15524	20860	20860					0.009246561748568638
IHKKRKRPLKQ	11	Unmodified	_IHKKRKRPLKQ_					0	0	0			REV__nc|ENSG00000166006|Q96PR1-3|KCNC2	REV__nc|ENSG00000166006|Q96PR1-3|KCNC2	MSMS	A375_MHC_IP_R1	1	716.8744506835938	2	716.472786	1430.93102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.81	1	138.81	138.31	139.31	0								0	0	0	0.1636	1	53379	53379		0	0	1		+		21281	20643	15416	15525	20861	20861					0.23279173070022807
IHKRVVNKV	9	Unmodified	_IHKRVVNKV_					0	0	0			REV__nc|ENSG00000126858|Q8IXI2-4|RHOT1	REV__nc|ENSG00000126858|Q8IXI2-4|RHOT1	MULTI-MSMS	A375_MHC_IP_R2	2	364.9389953613281	3	364.904859	1091.69275	0.00056625	2.0663E-07	0.070718	2.5805E-05	0.071284	2.6012E-05	364.90489878547214	32.167	0.70911	32.904	32.504	33.213	0.73691					35	13	3	0	0	0	0.72761	1	11475	11475		4.5289	0	1	9314600	+		21282	18402	15417	15526	20862	20862					0.15056812487750904
IHKTTKLHF	9	Unmodified	_IHKTTKLHF_					0	0	0		nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK;ENSG00000114956|ENST00000264093|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	MULTI-MSMS	A375_MHC_IP_R2	2	375.6027526855469	3	375.557348	1123.65021	-0.026998	-1.0139E-05	0.056271	2.1133E-05	0.029274	1.0994E-05	375.8917491864178	71.58	0.45583	72.314	72.111	72.567	0.73421					14	8	2	0	0	0	0.71416	1	27081	27081		5.7319	0.83484	1	1248700			21283	3261	15418	15527	20863	20863					0.09333417359516716
IHKVLQLMLRR	11	Unmodified	_IHKVLQLMLRR_					0	0	0		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-SECPEP	A375_MHC_IP_R2	2	351.93548583984375	4	352.474875	1405.87039	-0.26643	-9.3911E-05	0.36118	0.00012731	0.094744	3.3395E-05	352.47505807830277	39.554	0.40678	40.329	40.169	40.575	0.77451					12	7	2	0	0	0	1.0011	1	14630	14630		1.3296	0.82369	1	1769800			21284	2155	15419	15528	20864	20864					0.1836931969539819
IHKWSQLPK	9	Unmodified	_IHKWSQLPK_					0	0	0		ENST00000475950.5_1_2:219610891-219612096:+|nuORF;ENST00000465558.5_1_2:219610891-219612857:+|nuORF;ENSG00000135912|ENST00000392102|TTLL4	ENST00000475950.5_1_2:219610891-219612096:+|nuORF	ENST00000475950.5_1_2:219610891-219612096:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	379.95733642578125	3	379.557348	1135.65021	0.31631	0.00012006	-0.31299	-0.0001188	0.0033207	1.2604E-06	379.55718595194077	34.155	0.50651	34.155	33.898	34.405	0					17	9	3	0	0	0	0.67787	1	11276	11276		8.9762	2.3459	1	3527300			21285	4725	15420	15529	20865	20865					0.08781417359500665
IHLEPSRKL	9	Unmodified	_IHLEPSRKL_					0	0	0		ENST00000296978.3_1_6:130686962-130687400:+|nuORF	ENST00000296978.3_1_6:130686962-130687400:+|nuORF	ENST00000296978.3_1_6:130686962-130687400:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	364.6086120605469	3	364.888986	1091.64513	-0.46005	-0.00016787	-0.45544	-0.00016618	-0.91548	-0.00033405	364.8891713119326	28.471	0.50646	29.15	28.757	29.263	0.67857					14	9	2	0	0	0	0.39434	1	9841	9841		24.991	0.1094	1	14941000			21286	10512	15421	15530	20866	20866					0.10297113496903876
IHLHDLDYL	9	Unmodified	_IHLHDLDYL_					0	0	0		tr|U7SXE1|U7SXE1_FUSNUAnaerobicribonucleoside-triphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00945PE=4SV=1	tr|U7SXE1|U7SXE1_FUSNUAnaerobicribonucleoside-triphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00945PE=4SV=1	tr|U7SXE1|U7SXE1_FUSNUAnaerobicribonucleoside-triphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00945PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	380.9499206542969	3	380.201229	1137.58186	-0.4467	-0.00016984	0.85821	0.00032629	0.4115	0.00015645	380.20153154281036	28.459	0.2035	29.138	29.01	29.214	0.67857					5	3	2	0	0	0	0.74651	1	9823	9823		8.7454	1.1365	1	1952300			21287	29827	15422	15531	20867	20867					0.018571279890011283
IHLLIFYRQIL	11	Unmodified	_IHLLIFYRQIL_					0	0	0		ENST00000493051.1_1_2:110886666-110902094:-|nuORF;nc|ENSG00000144061|O15259-3|NPHP1;ENSG00000144061|ENST00000445609|NPHP1;nc|ENSG00000144061|O15259|NPHP1;nc|ENSG00000144061|O15259-4|NPHP1	ENST00000493051.1_1_2:110886666-110902094:-|nuORF	ENST00000493051.1_1_2:110886666-110902094:-|nuORF	MSMS	A375_MHC_IP_R1	1	476.6534118652344	3	476.962374	1427.86529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.235	1	22.235	21.735	22.735	0								0	0	0	0.16331	1	5947	5947		0.50596	0	1				21288	5461	15423	15532	20868	20868					0.16847339104469938
IHLPAAVLLKE	11	Unmodified	_IHLPAAVLLKE_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;ENST00000497023.1_1_2:32727936-32730277:+|nuORF	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MSMS	A375_MHC_IP_R2	2	602.739013671875	2	602.376623	1202.73869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.06	1	143.09	142.59	143.59	0.030731								0	0	0	0.16249	1	55920	55920		5.7319	2.1354	1				21289	3337	15424	15533	20869	20869					0.1454341287931129
IHLTVAVV	8	Unmodified	_IHLTVAVV_					0	0	0		nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2	nc|ENSG00000007171|P35228-2|NOS2	nc|ENSG00000007171|P35228-2|NOS2	MULTI-MSMS	A375_MHC_IP_R1	1	426.6710205078125	2	426.271096	850.527639	-0.0098888	-4.2153E-06	0.1314	5.6014E-05	0.12152	5.1799E-05	426.27110856925833	35.192	1.4267	35.192	34.861	36.287	0					60	27	4	0	0	0	0.6817	1	11866	11866		40.449	2.2974	1	75443000			21290	936	15425	15534	20870	20870					0.09639580628095246
IHLVGHHHV	9	Unmodified	_IHLVGHHHV_					0	0	0			REV__ENST00000400454.5_1_21:41414428-41416141:-|nuORF	REV__ENST00000400454.5_1_21:41414428-41416141:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	524.4877319335938	2	524.793592	1047.57263	-0.35286	-0.00018518	-3.596	-0.0018871	-3.9488	-0.0020723	524.7929550164164	79.159	0.305	79.159	78.96	79.265	0					7	5	2	0	0	0	0.77244	1	28919	28919		9.3474	0	1	588250	+		21291	24403	15426	15535	20871	20871					0.050748242139889044
IHMMNMHY	8	Unmodified	_IHMMNMHY_					0	0	0			REV__ENSG00000187010|ENST00000328664|RHD	REV__ENSG00000187010|ENST00000328664|RHD	MULTI-MSMS	A375_MHC_IP_R2	2	538.684814453125	2	538.727358	1075.44016	-0.9807	-0.00052833	-0.75545	-0.00040698	-1.7361	-0.00093531	538.7267878352105	36.203	0.45894	36.973	36.749	37.207	0.7709					13	8	2	0	0	0	0.7758	1	13147	13147		10.183	0.83596	1	2339900	+		21292	22003	15427	15536	20872	20872					-0.0945402790098342
IHNVPEGL	8	Unmodified	_IHNVPEGL_					0	0	0		ENSG00000133195|ENST00000255559|SLC39A11;nc|ENSG00000133195|Q8N1S5|SLC39A11	ENSG00000133195|ENST00000255559|SLC39A11	ENSG00000133195|ENST00000255559|SLC39A11	MULTI-MSMS	A375_MHC_IP_R2	2	440.17620849609375	2	439.74016	877.465767	-0.31698	-0.00013939	-0.34624	-0.00015226	-0.66323	-0.00029165	439.7401667628997	77.995	0.35881	78.738	78.468	78.827	0.74293					10	6	2	0	0	0	0.70843	1	29602	29602		32.117	0	1	798810			21293	4493	15428	15537	20873	20873					0.022132292089509065
IHPRVLSFVS	10	Unmodified	_IHPRVLSFVS_					0	0	0			REV__nc|ENSG00000061918|Q02153-2|GUCY1B1	REV__nc|ENSG00000061918|Q02153-2|GUCY1B1	MULTI-SECPEP	A375_MHC_IP_R1	1	385.6136779785156	3	385.560869	1153.66078	0.23964	9.2397E-05	1.7428	0.00067197	1.9825	0.00076436	385.5616303070633	25.434	0.2051	25.434	25.255	25.46	0					5	3	2	0	0	0	0.91909	1	7431	7431		5.4027	0	1	1019100	+		21294	16452	15429	15538	20874	20874					0.09009400013951563
IHQFSYFV	8	Unmodified	_IHQFSYFV_					0	0	0			REV__ENST00000427574.6_1_11:76157982-76207767:+|nuORF	REV__ENST00000427574.6_1_11:76157982-76207767:+|nuORF	MSMS	A375_MHC_IP_R1	1	520.7106323242188	2	520.763635	1039.51272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.389	1	60.389	59.889	60.889	0								0	0	0	0.16876	1	21741	21741		8.5933	0.68312	1		+		21295	24667	15430	15539	20875	20875					-0.005459112399194055
IHQLNSFIS	9	Unmodified	_IHQLNSFIS_					0	0	0		ENST00000366956.9_1_1:214530787-214530958:-|nuORF	ENST00000366956.9_1_1:214530787-214530958:-|nuORF	ENST00000366956.9_1_1:214530787-214530958:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	530.1658325195312	2	529.785099	1057.55564	-0.71201	-0.00037721	0.17441	9.2398E-05	-0.5376	-0.00028481	530.2869607002268	39.285	0.25461	40.06	39.863	40.118	0.77451					7	4	2	0	0	0	0.73926	1	14438	14438		8.7454	0	1	993480			21296	11073	15431	15540	20876	20876					0.029168588175252808
IHQVPHLFF	9	Unmodified	_IHQVPHLFF_					0	0	0			REV__DISP1|p.V1395Cfs*18|1|0.06|ENSG00000154309|chr1:223005576-223005577|-/T|frameshift_variant	REV__DISP1|p.V1395Cfs*18|1|0.06|ENSG00000154309|chr1:223005576-223005577|-/T|frameshift_variant	MSMS	A375_MHC_IP_R1	1	380.2774963378906	3	379.87831	1136.6131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.793	1	54.793	54.293	55.293	0								0	0	0	0.15486	1	19579	19579		12.241	4.0851	1		+		21297	15993	15432	15541	20877	20877					0.05025745813759386
IHREEYSL	8	Unmodified	_IHREEYSL_					0	0	0		ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122735394-122750988:-|nuORF	ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1345825195312	2	523.766906	1045.51926	-0.47577	-0.00024919	-0.26691	-0.0001398	-0.74268	-0.00038899	523.7668245185904	88.371	0.50542	89.103	88.774	89.279	0.7318					15	9	2	0	0	0	0.93416	1	33536	33536		14.582	9.2848	1	2489900			21298	5105	15433	15542	20878	20878					-0.0016801807919364364
IHRFWYNYRQR	11	Unmodified	_IHRFWYNYRQR_					0	0	0		nc|ENSG00000171509|Q9HBX9-4|RXFP1;ENSG00000171509|ENST00000307765|RXFP1;nc|ENSG00000171509|Q9HBX9-5|RXFP1;nc|ENSG00000171509|Q9HBX9-2|RXFP1	nc|ENSG00000171509|Q9HBX9-4|RXFP1	nc|ENSG00000171509|Q9HBX9-4|RXFP1	MSMS	A375_MHC_IP_R2	2	819.9213256835938	2	819.923658	1637.83276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.565	1	96.315	95.815	96.815	0.75045								0	0	0	0.16337	1	36299	36299		1.1933	1.1933	1				21299	7612	15434	15543	20879	20879					0.0393594475417558
IHRFWYNYRQR	11	Unmodified	_IHRFWYNYRQR_					0	0	0		nc|ENSG00000171509|Q9HBX9-4|RXFP1;ENSG00000171509|ENST00000307765|RXFP1;nc|ENSG00000171509|Q9HBX9-5|RXFP1;nc|ENSG00000171509|Q9HBX9-2|RXFP1	nc|ENSG00000171509|Q9HBX9-4|RXFP1	nc|ENSG00000171509|Q9HBX9-4|RXFP1	MSMS	A375_MHC_IP_R2	2	819.7837524414062	2	819.923658	1637.83276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.04	1	129.28	128.78	129.78	0.23946								0	0	0	0.16297	1	50702	50702		3.2813	3.2813	1				21300	7612	15434	15543	20880	20880					0.0393594475417558
IHRGWLCIEG	10	Unmodified	_IHRGWLCIEG_					0	0	0			REV__nc|ENSG00000130377|Q5FVE4-4|ACSBG2	REV__nc|ENSG00000130377|Q5FVE4-4|ACSBG2	MULTI-SECPEP	A375_MHC_IP_R2	2	394.6098937988281	3	395.206209	1182.5968	-0.17583	-6.9488E-05	-0.28906	-0.00011424	-0.46489	-0.00018373	395.5402930728446	32.368	0.50957	33.104	32.857	33.367	0.73691					13	9	2	0	0	0	0.91909	1	11466	11466		12.175	6.6515	1	3062800	+		21301	18536	15435	15544	20881	20881					0.012802965853097703
IHRQRRFQKL	10	Unmodified	_IHRQRRFQKL_					0	0	0		ENST00000479859.1_1_2:24199858-24199963:+|nuORF;ENST00000446425.2_1_2:24199858-24205795:+|nuORF	ENST00000479859.1_1_2:24199858-24199963:+|nuORF	ENST00000479859.1_1_2:24199858-24199963:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	691.8167724609375	2	691.418011	1380.82147	-0.97363	-0.00067318	-0.039523	-2.7327E-05	-1.0132	-0.00070051	691.4174685888289	149.09	2.1584	149.09	147.85	150	0					232	68	4	0	0	0	0.72716	1	56600	56600		0.40072	0	1	1594100			21302	12034	15436	15545	20882	20882					0.14629167450675595
IHRRRRARVH	10	Unmodified	_IHRRRRARVH_					0	0	0		nc|ENSG00000154133|Q8WZ75-3|ROBO4;ROBO4|p.E787Rfs*7|1|0.09|ENSG00000154133|chr11:124887053-124887053|C/-|frameshift_variant;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4;ENST00000532216.5_1_11:124756354-124763822:-|nuORF	nc|ENSG00000154133|Q8WZ75-3|ROBO4	nc|ENSG00000154133|Q8WZ75-3|ROBO4	MULTI-MSMS	A375_MHC_IP_R2	2	679.45361328125	2	678.919044	1355.82354	-0.46395	-0.00031498	-0.13924	-9.4533E-05	-0.60319	-0.00040952	678.9188949870553	137.08	0.46255	137.19	137.02	137.48	0.11134					19	8	3	0	0	0	0.72716	1	53907	53907		0.40072	0	1	4866300			21303	6061	15437	15546	20883	20883					0.1598564097914732
IHSFELDLL	9	Unmodified	_IHSFELDLL_					0	0	0		ENSG00000213190|ENST00000368921|MLLT11	ENSG00000213190|ENST00000368921|MLLT11	ENSG00000213190|ENST00000368921|MLLT11	MULTI-SECPEP	A375_MHC_IP_R1	1	362.2734375	3	362.865847	1085.57571	0.40714	0.00014774	-0.00077374	-2.8077E-07	0.40636	0.00014746	363.20005764013877	45.581	0.35447	45.581	45.434	45.789	0					12	6	3	0	0	0	0.76452	1	15991	15991		12.241	9.6094	1	1029900			21304	9557	15438	15547	20884	20884					0.03634609757477847
IHSKQHIKL	9	Unmodified	_IHSKQHIKL_					0	0	0			REV__nc|ENSG00000147124|P51814-4|ZNF41	REV__nc|ENSG00000147124|P51814-4|ZNF41	MULTI-SECPEP	A375_MHC_IP_R2	2	368.285400390625	3	368.560981	1102.66111	0.2794	0.00010298	-0.14819	-5.4618E-05	0.13121	4.8359E-05	368.5608343566498	27.598	0.25294	28.277	28.098	28.351	0.67857					6	4	2	0	0	0	0.76452	1	9402	9402		8.1555	3.6267	1	1037800	+		21305	19570	15439	15548	20885	20885					0.11388819733792843
IHSPVVNEL	9	Unmodified	_IHSPVVNEL_					0	0	0		ENSG00000055044|ENST00000264279|NOP58;ENST00000478941.1_1_2:203147084-203155055:+|nuORF;ENST00000488403.5_1_2:203130664-203149205:+|nuORF	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	MULTI-SECPEP	A375_MHC_IP_R2	2	504.6795654296875	2	504.279649	1006.54475	-1.1042	-0.00055684	0.55801	0.00028139	-0.54621	-0.00027544	504.2799195237881	52.407	0.90884	53.159	52.831	53.74	0.75225					25	17	2	0	0	0	0.11436	1	19740	19740		58.679	26.373	1	5089900			21306	1266	15440	15549	20886	20886					0.04173456443231771
IHVEKPFES	9	Unmodified	_IHVEKPFES_					0	0	0		ENSG00000180938|ENST00000319286|ZNF572	ENSG00000180938|ENST00000319286|ZNF572	ENSG00000180938|ENST00000319286|ZNF572	MULTI-SECPEP	A375_MHC_IP_R1	1	362.5976257324219	3	362.525713	1084.55531	0.058924	2.1361E-05	-1.3807	-0.00050054	-1.3218	-0.00047917	362.5251031127292	53.267	0.65793	53.267	52.796	53.453	0					16	12	2	0	0	0	0.71541	1	18920	18920		7.609	0.97858	1	862230			21307	8327	15441	15550	20887	20887					0.016414390976706272
IHVTGPEEFT	10	Unmodified	_IHVTGPEEFT_					0	0	0			REV__ENSG00000175414|ENST00000310389|ARL10	REV__ENSG00000175414|ENST00000310389|ARL10	MULTI-SECPEP	A375_MHC_IP_R1	1	377.6206970214844	3	377.188989	1128.54514	0.037215	1.4037E-05	-0.011484	-4.3316E-06	0.025731	9.7056E-06	377.18892592607904	23.61	0.25454	23.61	23.483	23.737	0					7	4	2	0	0	0	0.90853	1	6470	6470		3.5871	0	1	2664700	+		21308	21343	15442	15551	20888	20888					-0.013991686275630855
IHVTVDTYSH	10	Unmodified	_IHVTVDTYSH_					0	0	0		nc|ENSG844|Q9WJR5|ERVK-19_pol	nc|ENSG844|Q9WJR5|ERVK-19_pol	nc|ENSG844|Q9WJR5|ERVK-19_pol	MSMS	A375_MHC_IP_R1	1	391.15264892578125	3	391.196256	1170.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.423	1	88.423	87.923	88.923	0								0	0	0	0.14793	1	32460	32460		13.615	6.1378	1				21309	14970	15443	15552	20889	20889					-0.011523638790094992
IHWEKMVK	8	Unmodified	_IHWEKMVK_					0	0	0		ENST00000463333.6_1_2:86831591-86842310:-|nuORF;ENSG00000239305|ENST00000237455|RNF103	ENST00000463333.6_1_2:86831591-86842310:-|nuORF	ENST00000463333.6_1_2:86831591-86842310:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	357.5975646972656	3	357.532034	1069.57427	-0.44622	-0.00015954	-0.44138	-0.00015781	-0.8876	-0.00031734	357.5319003593928	35.395	1.0097	36.158	35.425	36.435	0.76338					27	19	2	0	0	0	0.96184	1	12807	12807		18.146	18.146	1	10223000			21310	9763	15444	15553	20890	20890					0.04226697187732498
IIAAPITDP	9	Unmodified	_IIAAPITDP_					0	0	0		nc|ENSG00000151276|Q96QZ7|MAGI1;nc|ENSG00000151276|Q96QZ7-3|MAGI1;nc|ENSG00000151276|Q96QZ7-5|MAGI1;nc|ENSG00000151276|Q96QZ7-7|MAGI1;nc|ENSG00000151276|Q96QZ7-6|MAGI1;ENSG00000151276|ENST00000402939|MAGI1;nc|ENSG00000151276|Q96QZ7-4|MAGI1;ENST00000476703.1_1_3:65455956-65464342:-|nuORF;ENST00000464060.5_1_3:65438903-66023983:-|nuORF	nc|ENSG00000151276|Q96QZ7|MAGI1	nc|ENSG00000151276|Q96QZ7|MAGI1	MULTI-SECPEP	A375_MHC_IP_R1	1	910.0830688476562	1	910.52441	909.517133	0.30528	0.00027796	3.279	0.0029857	3.5843	0.0032636	910.5248930642082	115	0.2504	115	114.87	115.12	0					6	4	2	0	0	0	0.67221	1	42194	42194		8.5933	6.0158	1	2697900			21311	14678	15445	15554	20891	20891					0.058755531829774554
IIADNIIFL	9	Unmodified	_IIADNIIFL_					0	0	0		ENSG00000106028|ENST00000265304|SSBP1	ENSG00000106028|ENST00000265304|SSBP1	ENSG00000106028|ENST00000265304|SSBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	516.7101440429688	2	516.310418	1030.60628	-0.73331	-0.00037862	-0.60077	-0.00031018	-1.3341	-0.0006888	516.3105248188995	131.92	0.25165	132.11	132	132.25	0.18953					9	4	3	0	0	0	0.064992	1	51906	51906		68.081	15.812	1	4904000			21312	2661	15446	15555	20892	20892					0.09220388142512093
IIAEPGRYY	9	Unmodified	_IIAEPGRYY_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-SECPEP	A375_MHC_IP_R1	1	541.6871337890625	2	541.287474	1080.5604	-0.33326	-0.00018039	-0.16929	-9.1634E-05	-0.50255	-0.00027202	541.2872446278895	49.683	0.40597	49.683	49.439	49.845	0					13	7	2	0	0	0	0.13064	1	17574	17574		65.235	31.133	1	3664700			21313	3336	15447	15556	20893	20893					0.023337429602634074
IIAEPGRYY	9	Unmodified	_IIAEPGRYY_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-SECPEP	A375_MHC_IP_R2	2	541.6560668945312	2	541.287474	1080.5604	-0.97281	-0.00052657	-0.068979	-3.7338E-05	-1.0418	-0.00056391	541.2873103496843	48.907	0.45984	49.664	49.383	49.843	0.75737					19	8	3	0	0	0	0.28216	1	18392	18392		41.84	14.956	1	4198000			21314	3336	15447	15556	20894	20894					0.023337429602634074
IIAESLRVF	9	Unmodified	_IIAESLRVF_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	A375_MHC_IP_R2	2	524.7305908203125	2	524.313492	1046.61243	-0.27945	-0.00014652	-2.0789	-0.00109	-2.3583	-0.0012365	524.3128519028304	99.923	0.659	100.69	100.17	100.83	0.76278					15	12	2	0	0	0	0.58047	1	37733	37733		15.847	1.2655	1	1422600	+		21315	21583	15448	15557	20895	20895					0.09098906374038052
IIAKNYDKL	9	Unmodified	_IIAKNYDKL_					0	0	0			REV__tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1	REV__tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	360.28143310546875	3	359.881608	1076.623	-0.70976	-0.00025543	0.18195	6.5482E-05	-0.52781	-0.00018995	359.8816325549561	52.812	0.66009	53.563	53.233	53.893	0.75105					28	12	3	0	0	0	0.4867	1	19923	19923		14.405	2.8875	1	7815600	+		21316	28649	15449	15558	20896	20896					0.08774889028450161
IIAKNYDKL	9	Unmodified	_IIAKNYDKL_					0	0	0			REV__tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1	REV__tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	359.881608	1076.623	-0.70976	-0.00025543	0.18195	6.5482E-05	-0.52781	-0.00018995	359.8816325549561	52.812	0.66009	53.563	53.233	53.893	0.75105	-0.10207	0.00011958	NaN	14.405	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7815600	+		21317	28649	15449	15558							0.08774889028450161
IIALDPNYY	9	Unmodified	_IIALDPNYY_					0	0	0		SCN5A|p.Y774N|1|0.33|ENSG00000183873|chr3:38587516-38587516|A/T|missense_variant	SCN5A|p.Y774N|1|0.33|ENSG00000183873|chr3:38587516-38587516|A/T|missense_variant	SCN5A|p.Y774N|1|0.33|ENSG00000183873|chr3:38587516-38587516|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	540.7313842773438	2	541.281857	1080.54916	-1.2419	-0.00067223	-2.5843	-0.0013988	-3.8262	-0.0020711	541.279748143087	59.188	0.50648	59.936	59.691	60.198	0.74714					10	9	2	0	0	0	0.71541	1	22458	22458		16.942	12.045	1	1215300			21318	29118	15450	15559	20897	20897					0.012109208661286175
IIAPPERKY	9	Unmodified	_IIAPPERKY_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ACTB|p.S338F|1|0.09|ENSG00000075624|chr7:5527863-5527863|G/A|missense_variant;ACTG2|p.I328S|1|0.18|ENSG00000163017|chr2:73916761-73916761|T/G|missense_variant;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2	ENSG00000075624|ENST00000646664|ACTB;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-SECPEP	A375_MHC_IP_R1	1	363.2815856933594	3	362.88172	1085.62333	0.10716	3.8887E-05	-0.3623	-0.00013147	-0.25514	-9.2584E-05	362.8815543766104	27.351	0.50615	27.351	27.078	27.584	0					20	9	3	0	0	0	0.57806	1	8286	8286		24.882	9.6331	1	13278000			21319	1615;5418	15451	15560	20898	20898					0.08394308748324875
IIAPPERKY	9	Unmodified	_IIAPPERKY_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ACTB|p.S338F|1|0.09|ENSG00000075624|chr7:5527863-5527863|G/A|missense_variant;ACTG2|p.I328S|1|0.18|ENSG00000163017|chr2:73916761-73916761|T/G|missense_variant;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2	ENSG00000075624|ENST00000646664|ACTB;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-SECPEP	A375_MHC_IP_R2	2	363.2813415527344	3	362.88172	1085.62333	-0.4205	-0.00015259	-0.12263	-4.4499E-05	-0.54313	-0.00019709	362.8815956237118	26.728	0.40795	27.388	27.212	27.62	0.65992					19	7	3	0	0	0	0.48845	1	9050	9050		37.075	17.713	1	12734000			21320	1615;5418	15451	15560	20899	20899					0.08394308748324875
IICFSRFSI	9	Unmodified	_IICFSRFSI_					0	0	0			REV__ENSG00000181616|ENST00000322653|OR52H1	REV__ENSG00000181616|ENST00000322653|OR52H1	MULTI-SECPEP	A375_MHC_IP_R1	1	543.7037963867188	2	543.294245	1084.57394	-0.51855	-0.00028173	-0.86018	-0.00046733	-1.3787	-0.00074906	543.2936561050321	104.82	0.40429	104.82	104.69	105.1	0					10	7	2	0	0	0	0.33896	1	38510	38510		52.268	23.782	1	909860	+		21321	21659	15452	15561	20900	20900					0.035032774678711576
IICQSLAW	8	Unmodified	_IICQSLAW_					0	0	0		ENST00000534767.1_1_11:43919588-43920434:+|nuORF	ENST00000534767.1_1_11:43919588-43920434:+|nuORF	ENST00000534767.1_1_11:43919588-43920434:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	467.646728515625	2	467.246763	932.478974	-0.42836	-0.00020015	-0.38799	-0.00018128	-0.81634	-0.00038143	467.24681440017946	94.113	2.539	94.858	94.412	96.951	0.74473					89	49	4	0	0	0	0.7758	1	35934	35934		10.183	0.83596	1	5202200			21322	13216	15453	15562	20901	20901					0.010033439966719016
IIDDNHAIV	9	Unmodified	_IIDDNHAIV_					0	0	0		nc|ENSG00000100764|P62191-2|PSMC1;ENSG00000100764|ENST00000261303|PSMC1;ENST00000555679.5_1_14:90722941-90730197:+|nuORF;ENST00000396338.3_1_12:18845807-18846413:+|nuORF	nc|ENSG00000100764|P62191-2|PSMC1	nc|ENSG00000100764|P62191-2|PSMC1	MULTI-SECPEP	A375_MHC_IP_R2	2	505.66900634765625	2	505.269281	1008.52401	-0.49735	-0.0002513	0.16473	8.3233E-05	-0.33262	-0.00016806	505.26939225407074	46.979	0.45756	47.741	47.513	47.97	0.76128					12	8	2	0	0	0	0.34746	1	17630	17630		38.176	3.7738	1	3596700			21323	2217	15454	15563	20902	20902					0.020088660635678934
IIDDNHAIV	9	Unmodified	_IIDDNHAIV_					0	0	0		nc|ENSG00000100764|P62191-2|PSMC1;ENSG00000100764|ENST00000261303|PSMC1;ENST00000555679.5_1_14:90722941-90730197:+|nuORF;ENST00000396338.3_1_12:18845807-18846413:+|nuORF	nc|ENSG00000100764|P62191-2|PSMC1	nc|ENSG00000100764|P62191-2|PSMC1	MULTI-MATCH	A375_MHC_IP_R1	1		2	505.269281	1008.52401	-0.22441	-0.00011339	-0.28688	-0.00014495	-0.51129	-0.00025834	505.2692323460469	47.737	0.55365	47.737	47.467	48.02	0	-0.0019175	-0.0002343	NaN	38.176	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1830200			21324	2217	15454	15563							0.020088660635678934
IIDDTIFNL	9	Unmodified	_IIDDTIFNL_					0	0	0		NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1;ENST00000588867.1_1_18:21114346-21115663:-|nuORF	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	532.6878051757812	2	532.28714	1062.55973	-0.8107	-0.00043152	1.1567	0.00061569	0.34599	0.00018416	532.287388340541	129.47	0.96408	129.47	129.3	130.26	0					60	18	7	0	0	0	0.0097736	1	49789	49789		112.59	23.69	1	131060000			21325	5244	15455	15564	20903	20903					0.03094903520582193
IIDDTIFNL	9	Unmodified	_IIDDTIFNL_					0	0	0		NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1;ENST00000588867.1_1_18:21114346-21115663:-|nuORF	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	1063.1219482421875	1	1063.567	1062.55973	-0.049222	-5.2351E-05	0.59303	0.00063072	0.54381	0.00057837	1063.5676672111188	129.47	0.70917	129.47	129.3	130.01	0					21	13	3	0	0	0	0.083712	1	49910	49910		56.177	14.337	1	97786000			21326	5244	15455	15564	20904	20904					0.03094903520582193
IIDDTIFNL	9	Unmodified	_IIDDTIFNL_					0	0	0		NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1;ENST00000588867.1_1_18:21114346-21115663:-|nuORF	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	532.6665649414062	2	532.28714	1062.55973	-0.7375	-0.00039256	-0.16553	-8.811E-05	-0.90303	-0.00048067	532.2870080628436	129.25	1.0599	129.49	129.31	130.37	0.23946					31	20	2	0	0	0	0.0090669	2	50825	50775;50825		112.59	23.69	1	96863000			21327	5244	15455	15564	20905;20906	20906					0.03094903520582193
IIDDTIFNL	9	Unmodified	_IIDDTIFNL_					0	0	0		NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1;ENST00000588867.1_1_18:21114346-21115663:-|nuORF	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		1	1063.567	1062.55973	0.022247	2.3661E-05	0.36493	0.00038813	0.38718	0.00041179	1063.5668717377057	129.25	0.65573	129.49	129.31	129.97	0.23946	0.0062493	-0.00020766	NaN	56.177	29	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67687000			21328	5244	15455	15564							0.03094903520582193
IIDEKDAFS	9	Unmodified	_IIDEKDAFS_					0	0	0			REV__EDEM3|p.L473S|1|0.28|ENSG00000116406|chr1:184712551-184712551|A/G|missense_variant	REV__EDEM3|p.L473S|1|0.28|ENSG00000116406|chr1:184712551-184712551|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	518.68896484375	2	519.261122	1036.50769	-0.75413	-0.00039159	0.50244	0.0002609	-0.25169	-0.00013069	519.2613658480968	131.7	0.15166	131.7	131.58	131.73	0					4	2	2	0	0	0	0.77834	1	50756	50756		2.0598	2.0598	1	2557300	+		21329	16058	15456	15565	20907	20907					-0.00910259893203147
IIDEKDAFS	9	Unmodified	_IIDEKDAFS_					0	0	0			REV__EDEM3|p.L473S|1|0.28|ENSG00000116406|chr1:184712551-184712551|A/G|missense_variant	REV__EDEM3|p.L473S|1|0.28|ENSG00000116406|chr1:184712551-184712551|A/G|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	519.261122	1036.50769	-0.66461	-0.00034511	1.1746	0.00060991	0.50995	0.0002648	519.2617678365605	131.52	0.15347	131.71	131.59	131.75	0.18954	0.0017145	0.00042355	NaN	2.0598	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2153600	+		21330	16058	15456	15565							-0.00910259893203147
IIDEKKYYL	9	Unmodified	_IIDEKKYYL_					0	0	0		ENSG00000117751|ENST00000311772|PPP1R8;ENST00000236412.11_1_1:28157683-28169749:+|nuORF	ENSG00000117751|ENST00000311772|PPP1R8	ENSG00000117751|ENST00000311772|PPP1R8	MULTI-MSMS	A375_MHC_IP_R1	1	395.9568176269531	3	395.556902	1183.64888	-0.057437	-2.272E-05	-0.2388	-9.4459E-05	-0.29624	-0.00011718	395.5567150477676	46.311	0.50322	46.311	46.144	46.647	0					16	9	2	0	0	0	0.14659	1	16260	16260		42.312	14.079	1	2999300			21331	3511	15457	15566	20908	20908					0.06439738480094093
IIDEKKYYL	9	Unmodified	_IIDEKKYYL_					0	0	0		ENSG00000117751|ENST00000311772|PPP1R8;ENST00000236412.11_1_1:28157683-28169749:+|nuORF	ENSG00000117751|ENST00000311772|PPP1R8	ENSG00000117751|ENST00000311772|PPP1R8	MULTI-MSMS	A375_MHC_IP_R2	2	395.95672607421875	3	395.556902	1183.64888	-0.15846	-6.2678E-05	-0.28092	-0.00011112	-0.43938	-0.0001738	395.5567696044466	45.563	0.55483	46.328	46.099	46.654	0.76519					15	10	2	0	0	0	0.12748	1	17029	17029		45.74	17.506	1	3390600			21332	3511	15457	15566	20909	20909					0.06439738480094093
IIDERTGDIY	10	Unmodified	_IIDERTGDIY_					0	0	0		ENSG00000071991|ENST00000262150|CDH19;CDH19|p.Q472Sfs*4|1|0.22|ENSG00000071991|chr18:66529890-66529891|-/G|frameshift_variant;nc|ENSG00000071991|Q9H159-2|CDH19;chr18:66505302-66529845|395|18.09|0.51|5.14|-|ENST00000540086|CDH19,CDH19	ENSG00000071991|ENST00000262150|CDH19	ENSG00000071991|ENST00000262150|CDH19	MULTI-MSMS	A375_MHC_IP_R1	1	598.2034301757812	2	597.803685	1193.59282	-0.029227	-1.7472E-05	-0.21693	-0.00012968	-0.24616	-0.00014715	597.8035779096315	48.377	4.5712	48.377	47.97	52.541	0					194	89	6	0	0	0	0.0025034	3	17196	16972;17196;17417		97.741	58.402	1	690880000			21333	1523	15458	15567	20910;20911;20912	20911					0.003764855726103633
IIDERTGDIY	10	Unmodified	_IIDERTGDIY_					0	0	0		ENSG00000071991|ENST00000262150|CDH19;CDH19|p.Q472Sfs*4|1|0.22|ENSG00000071991|chr18:66529890-66529891|-/G|frameshift_variant;nc|ENSG00000071991|Q9H159-2|CDH19;chr18:66505302-66529845|395|18.09|0.51|5.14|-|ENST00000540086|CDH19,CDH19	ENSG00000071991|ENST00000262150|CDH19	ENSG00000071991|ENST00000262150|CDH19	MULTI-MSMS	A375_MHC_IP_R2	2	598.203125	2	597.803685	1193.59282	-0.42935	-0.00025666	-0.33741	-0.0002017	-0.76675	-0.00045837	597.8034960146039	47.694	3.9019	48.455	48.022	51.924	0.76127					177	76	5	0	0	0	0.0069514	2	18252	17810;18252		118.21	72.51	1	715230000			21334	1523	15458	15567	20913;20914	20914					0.003764855726103633
IIDERTGDIY	10	Unmodified	_IIDERTGDIY_					0	0	0		ENSG00000071991|ENST00000262150|CDH19;CDH19|p.Q472Sfs*4|1|0.22|ENSG00000071991|chr18:66529890-66529891|-/G|frameshift_variant;nc|ENSG00000071991|Q9H159-2|CDH19;chr18:66505302-66529845|395|18.09|0.51|5.14|-|ENST00000540086|CDH19,CDH19	ENSG00000071991|ENST00000262150|CDH19	ENSG00000071991|ENST00000262150|CDH19	MULTI-SECPEP	A375_MHC_IP_R2	2	598.2034301757812	2	597.803685	1193.59282	-0.78152	-0.0004672	0.16579	9.9109E-05	-0.61573	-0.00036809	597.803525785571	51.388	1.2196	52.141	51.813	53.032	0.75225					36	23	2	0	0	0	0.70912	1	19349	19349		42.312	14.684	1	2382400			21335	1523	15458	15567	20915	20915					0.003764855726103633
IIDFFEFKELL	11	Unmodified	_IIDFFEFKELL_					0	0	0			REV__tr|U7SGN9|U7SGN9_FUSNU4-hydroxy-3-methylbut-2-en-1-yldiphosphatesynthase(flavodoxin)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispGPE=3SV=1	REV__tr|U7SGN9|U7SGN9_FUSNU4-hydroxy-3-methylbut-2-en-1-yldiphosphatesynthase(flavodoxin)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispGPE=3SV=1	MSMS	A375_MHC_IP_R1	1	471.705078125	3	471.926995	1412.75915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.225	1	70.225	69.725	70.725	0								0	0	0	0.16263	1	25494	25494		5.0475	0.93089	1		+		21336	28192	15459	15568	20916	20916					0.06928538748479696
IIDFLMETFI	10	Unmodified	_IIDFLMETFI_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000481728.2_1_8:25209198-25222229:+|nuORF;ENST00000467709.6_1_8:25191660-25227073:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-SECPEP	A375_MHC_IP_R2	2	620.7194213867188	2	621.32795	1240.64135	-0.53616	-0.00033313	0.01994	1.2389E-05	-0.51622	-0.00032074	621.3271749462572	143.64	1.1355	143.66	143.24	144.37	0.024414					40	22	3	0	0	0	0.94421	1	56004	56004		1.6526	0	1	7336000			21337	5684	15460	15569	20917	20917					0.030652628881398414
IIDFWKMW	8	Unmodified	_IIDFWKMW_					0	0	0		ENST00000370574.3_2_1:86171783-86171934:-|nuORF	ENST00000370574.3_2_1:86171783-86171934:-|nuORF	ENST00000370574.3_2_1:86171783-86171934:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	570.191162109375	2	569.791338	1137.56812	-0.2382	-0.00013572	-1.1978	-0.00068249	-1.436	-0.00081821	569.7913033243855	48.096	0.60368	48.858	48.632	49.235	0.76128					19	11	2	0	0	0	0.73563	1	18049	18049		44.407	3.9584	1	5336100			21338	11151	15461	15570	20918	20918					0.004841789562078702
IIDGKIFCV	9	Unmodified	_IIDGKIFCV_					0	0	0		ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF	ENSG00000149923|ENST00000279387|PPP4C	ENSG00000149923|ENST00000279387|PPP4C	MULTI-MSMS	A375_MHC_IP_R1	1	504.6832580566406	2	504.283346	1006.55214	-0.4602	-0.00023207	-0.4819	-0.00024301	-0.9421	-0.00047508	504.2830216983823	94.157	1.928	94.157	93.686	95.614	0					84	37	3	0	0	0	0.34064	1	34978	34978		27.629	2.2295	1	12767000			21339	5832	15462	15571	20919	20919					0.0491247271930888
IIDGKIFCV	9	Unmodified	_IIDGKIFCV_					0	0	0		ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF	ENSG00000149923|ENST00000279387|PPP4C	ENSG00000149923|ENST00000279387|PPP4C	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1622619628906	2	504.283346	1006.55214	-0.55833	-0.00028156	0.04126	2.0807E-05	-0.51707	-0.00026075	504.2832559266171	93.321	2.1287	94.06	93.443	95.572	0.73902					98	41	4	0	0	0	0.27114	1	35525	35525		45.74	9.6129	1	12169000			21340	5832	15462	15571	20920	20920					0.0491247271930888
IIDGKIFCV	9	Unmodified	_IIDGKIFCV_					0	0	0		ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF	ENSG00000149923|ENST00000279387|PPP4C	ENSG00000149923|ENST00000279387|PPP4C	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	504.283346	1006.55214	-0.4602	-0.00023207	-0.4819	-0.00024301	-0.9421	-0.00047508	504.2830216983823	94.157	1.928	94.157	93.686	95.614	0	0.048088	-0.00020238	NaN	45.74	84	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12767000			21341	5832	15462	15571							0.0491247271930888
IIDGKIFCV	9	Carbamidomethyl (C)	_IIDGKIFC(Carbamidomethyl (C))V_	IIDGKIFC(1)V		IIDGKIFC(58)V		0	1	0		ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF	ENSG00000149923|ENST00000279387|PPP4C	ENSG00000149923|ENST00000279387|PPP4C	MULTI-SECPEP	A375_MHC_IP_R1	1	532.4335327148438	2	532.794078	1063.5736	-0.72806	-0.00038791	-0.64611	-0.00034424	-1.3742	-0.00073215	532.7939438156366	87.17	1.2195	87.17	86.781	88	0					89	23	6	0	0	0	0.20451	1	31923	31923		57.722	19.748	1	69087000			21342	5832	15462	15572	20921	20921	39				0.044358577480352324
IIDGKIFCV	9	Carbamidomethyl (C)	_IIDGKIFC(Carbamidomethyl (C))V_	IIDGKIFC(1)V		IIDGKIFC(52)V		0	1	0		ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF	ENSG00000149923|ENST00000279387|PPP4C	ENSG00000149923|ENST00000279387|PPP4C	MULTI-MSMS	A375_MHC_IP_R2	2	533.7789306640625	2	532.794078	1063.5736	-0.5728	-0.00030519	-0.59486	-0.00031694	-1.1677	-0.00062212	532.7940792540394	86.358	1.8786	87.091	86.693	88.571	0.733					94	36	6	0	0	0	0.094655	1	32909	32909		51.63	21.789	1	54675000			21343	5832	15462	15572	20922	20922	39				0.044358577480352324
IIDHHDNTY	9	Unmodified	_IIDHHDNTY_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	A375_MHC_IP_R1	1	564.6590576171875	2	564.259445	1126.50434	-0.58378	-0.0003294	-0.35234	-0.00019881	-0.93612	-0.00052821	564.2592773435863	19.394	0.20283	19.394	19.268	19.471	0					7	3	3	0	0	0	0.050868	2	4836	4816;4836		63.961	29.773	1	6523400			21344	9093	15463	15573	20923;20924	20924					-0.05385509947177525
IIDKDKLKI	9	Unmodified	_IIDKDKLKI_					0	0	0			REV__nc|ENSG00000130783|Q6P9F0-2|CCDC62	REV__nc|ENSG00000130783|Q6P9F0-2|CCDC62	MULTI-MSMS	A375_MHC_IP_R1	1	362.3009338378906	3	362.569142	1084.6856	0.39615	0.00014363	0.20955	7.5978E-05	0.6057	0.00021961	362.5691346963626	43.122	0.51023	43.122	42.79	43.3	0					17	8	3	0	0	0	0.69317	1	14925	14925		7.609	0.50723	1	3681100	+		21345	18566	15464	15574	20925	20925					0.14664035096643602
IIDKLQSP	8	Unmodified	_IIDKLQSP_					0	0	0		ENSG00000056586|ENST00000357244|RC3H2;nc|ENSG00000056586|Q9HBD1-6|RC3H2;nc|ENSG00000056586|Q9HBD1-4|RC3H2;nc|ENSG00000056586|Q9HBD1-2|RC3H2;nc|ENSG00000056586|Q9HBD1-3|RC3H2	ENSG00000056586|ENST00000357244|RC3H2	ENSG00000056586|ENST00000357244|RC3H2	MULTI-SECPEP	A375_MHC_IP_R2	2	913.8571166992188	1	913.535309	912.528032	-0.25603	-0.00023389	-4.2485	-0.0038811	-4.5045	-0.004115	913.5323795315653	117.98	0.65824	118.59	118.44	119.1	0.60909					16	12	2	0	0	0	0.94479	1	44980	44980		8.5933	0	1	13564000			21346	1278	15465	15575	20926	20926					0.06826955557278325
IIDPHCLSL	9	Unmodified	_IIDPHCLSL_					0	0	0			REV__ENST00000608168.1_1_19:16003249-16008861:-|nuORF	REV__ENST00000608168.1_1_19:16003249-16008861:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	505.1322937011719	2	505.770603	1009.52665	-0.33885	-0.00017138	-0.25852	-0.00013075	-0.59736	-0.00030213	505.77040528809835	96.381	0.50989	96.381	96.12	96.63	0					15	9	2	0	0	0	0.69504	1	35387	35387		7.9102	3.9658	1	545080	+		21347	26558	15466	15576	20927	20927					0.022269981968634056
IIDPWVFAI	9	Unmodified	_IIDPWVFAI_					0	0	0		ENSG00000125384|ENST00000245457|PTGER2	ENSG00000125384|ENST00000245457|PTGER2	ENSG00000125384|ENST00000245457|PTGER2	MULTI-MSMS	A375_MHC_IP_R1	1	538.7288208007812	2	537.305136	1072.59572	-0.64252	-0.00034523	-0.016761	-9.0056E-06	-0.65928	-0.00035424	537.3052021720756	91.831	3.4525	91.831	91.299	94.752	0					181	67	6	0	0	0	0.55818	1	34044	34044		16.942	5.8278	1	140650000			21348	3956	15467	15577	20928	20928					0.062324054880718904
IIDQHTFEV	9	Unmodified	_IIDQHTFEV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;nc|ENSG00000167986|Q16531-2|DDB1	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-SECPEP	A375_MHC_IP_R1	1	551.6817626953125	2	551.282389	1100.55022	-0.62199	-0.00034289	1.8595	0.0010251	1.2375	0.00068221	551.2834765923884	65.08	0.86488	65.08	64.495	65.36	0					30	16	2	0	0	0	0.11849	1	23530	23530		45.74	0.040262	1	4887200			21349	7247	15468	15578	20929	20929					0.003971352350390589
IIDREAFSL	9	Unmodified	_IIDREAFSL_					0	0	0		CDH23|p.P2034L|1|0.28|ENSG00000107736|chr10:71790315-71790315|C/T|missense_variant	CDH23|p.P2034L|1|0.28|ENSG00000107736|chr10:71790315-71790315|C/T|missense_variant	CDH23|p.P2034L|1|0.28|ENSG00000107736|chr10:71790315-71790315|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	532.1561889648438	2	532.292756	1062.57096	-0.73473	-0.00039109	3.3446	0.0017803	2.6099	0.0013892	532.7949475642173	90.093	0.55565	90.093	89.679	90.235	0					13	10	2	0	0	0	0.62767	1	33031	33031		23.148	7.8999	1	1188600			21350	345	15469	15579	20930	20930					0.04217725614716983
IIDRHVSRY	9	Unmodified	_IIDRHVSRY_					0	0	0		ENST00000466409.1_1_9:95874378-95875386:+|nuORF;ENST00000468781.5_1_9:95858594-95875386:+|nuORF;ENSG00000165233|ENST00000375464|CARD19	ENST00000466409.1_1_9:95874378-95875386:+|nuORF	ENST00000466409.1_1_9:95874378-95875386:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	387.2841796875	3	386.884123	1157.63054	0.069969	2.707E-05	0.12039	4.6577E-05	0.19036	7.3647E-05	386.8841321808797	19.394	0.38484	19.394	19.238	19.623	0					21	7	4	0	0	0	0.13845	1	4793	4793		34.222	12.422	1	31153000			21351	6928	15470	15580	20931	20931					0.058030413487585975
IIDRHVSRY	9	Unmodified	_IIDRHVSRY_					0	0	0		ENST00000466409.1_1_9:95874378-95875386:+|nuORF;ENST00000468781.5_1_9:95858594-95875386:+|nuORF;ENSG00000165233|ENST00000375464|CARD19	ENST00000466409.1_1_9:95874378-95875386:+|nuORF	ENST00000466409.1_1_9:95874378-95875386:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	386.884123	1157.63054	-0.40126	-0.00015524	-0.29601	-0.00011452	-0.69727	-0.00026976	386.88411849500636	18.905	0.25997	19.508	19.423	19.683	0.60308	0.057363	-0.00047656	NaN	34.222	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16687000			21352	6928	15470	15580							0.058030413487585975
IIDVVKTGIER	11	Unmodified	_IIDVVKTGIER_					0	0	0		ENST00000540341.1_1_12:8787398-8787947:+|nuORF	ENST00000540341.1_1_12:8787398-8787947:+|nuORF	ENST00000540341.1_1_12:8787398-8787947:+|nuORF	MSMS	A375_MHC_IP_R2	2	621.9824829101562	2	621.874445	1241.73434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.974	1	95.725	95.225	96.225	0.75045								0	0	0	0.16302	1	36084	36084		2.9952	0.26005	1				21353	13269	15471	15581	20932	20932					0.12313903665744874
IIDVVYNA	8	Unmodified	_IIDVVYNA_					0	0	0		ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-SECPEP	A375_MHC_IP_R1	1	905.8363647460938	1	906.49311	905.485833	-0.027067	-2.4536E-05	2.1205	0.0019222	2.0935	0.0018977	906.4956196159667	79.118	0.45775	79.118	78.96	79.418	0					12	8	2	0	0	0	0.95424	1	28882	28882		19.257	4.4187	1	2208900			21354	5337	15472	15582	20933	20933					0.02930980148892104
IIDVVYNA	8	Unmodified	_IIDVVYNA_					0	0	0		ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-MATCH	A375_MHC_IP_R2	2		1	906.49311	905.485833	-0.35209	-0.00031917	1.1956	0.0010838	0.84354	0.00076466	906.4947412335117	78.517	0.40604	79.261	78.931	79.337	0.74474	0.071888	-0.00040535	NaN	32.305	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2496500			21355	5337	15472	15582							0.02930980148892104
IIDYLTDHY	9	Unmodified	_IIDYLTDHY_					0	0	0		ENSG00000105865|ENST00000265720|DUS4L;nc|ENSG00000288558|O95620-2|DUS4L;ENST00000485825.1_1_7:107215546-107218002:+|nuORF	ENSG00000105865|ENST00000265720|DUS4L	ENSG00000105865|ENST00000265720|DUS4L	MULTI-SECPEP	A375_MHC_IP_R2	2	576.6530151367188	2	576.782222	1151.54989	-0.15359	-8.8589E-05	-0.5202	-0.00030004	-0.67379	-0.00038863	576.7819053239323	75.811	0.4066	76.552	76.385	76.792	0.74052					11	7	2	0	0	0	0.65246	1	28821	28821		21.747	12.399	1	1344700			21356	2646	15473	15583	20934	20934					-0.019822844848022214
IIECDMNVD	9	Unmodified	_IIECDMNVD_					0	0	0		ENST00000466373.1_1_22:19439515-19452862:-|nuORF;nc|ENSG00000070010|Q92890-3|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF;ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1	ENST00000466373.1_1_22:19439515-19452862:-|nuORF	ENST00000466373.1_1_22:19439515-19452862:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	526.6873168945312	2	526.225368	1050.43618	-0.4008	-0.00021091	3.6161	0.0019029	3.2153	0.001692	526.228014240548	83.781	0.81963	84.521	84.049	84.868	0.73962					19	15	2	0	0	0	0.58047	1	31839	31839		15.847	1.9411	1	1964300			21357	1485	15474	15584	20935	20935					-0.08701838913702886
IIEEDELTSD	10	Unmodified	_IIEEDELTSD_					0	0	0			REV__nc|ENSG00000013374|Q9Y5A7-2|NUB1	REV__nc|ENSG00000013374|Q9Y5A7-2|NUB1	MSMS	A375_MHC_IP_R2	2	582.409912109375	2	582.269341	1162.52413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.11	1	105.88	105.38	106.38	0.76308								0	0	0	0.15417	1	39763	39763		7.2892	0.56607	1		+		21358	16233	15475	15585	20936	20936					-0.0506322351777726
IIELKIPV	8	Unmodified	_IIELKIPV_					0	0	0		tr|U7SUG8|U7SUG8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01230PE=3SV=1	tr|U7SUG8|U7SUG8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01230PE=3SV=1	tr|U7SUG8|U7SUG8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01230PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	924.6716918945312	1	924.612831	923.605554	-0.051308	-4.744E-05	-2.7666	-0.0025581	-2.818	-0.0026055	924.6108396280017	128.77	0.25484	128.77	128.58	128.84	0					8	4	2	0	0	0	0.77603	1	49416	49416		9.3474	0	1	2438800			21359	29768	15476	15586	20937	20937					0.14069593493456978
IIEMPIFQSCF	11	Unmodified	_IIEMPIFQSCF_					0	0	0			REV__nc|ENSG00000144908|O75891-2|ALDH1L1	REV__nc|ENSG00000144908|O75891-2|ALDH1L1	MULTI-SECPEP	A375_MHC_IP_R1	1	443.6792297363281	3	443.219015	1326.63522	0.37747	0.0001673	2.0399	0.00090411	2.4173	0.0010714	443.2196627310611	69.249	0.35722	69.249	69.07	69.427	0					8	6	2	0	0	0	0.99606	1	25097	25097		0.45452	0	1	848750	+		21360	19455	15477	15587	20938	20938					-0.015035786150065178
IIEVLMYLL	9	Unmodified	_IIEVLMYLL_					0	0	0			REV__nc|ENSG00000001461|Q6P499-3|NIPAL3	REV__nc|ENSG00000001461|Q6P499-3|NIPAL3	MULTI-SECPEP	A375_MHC_IP_R1	1	553.7103881835938	2	553.830129	1105.6457	-0.15795	-8.7477E-05	-0.60797	-0.00033671	-0.76592	-0.00042419	553.8296526982834	127.23	1.9239	127.23	126.66	128.58	0					87	37	3	0	0	0	0.55359	1	49217	49217		28.487	5.3384	1	72363000	+		21361	16082	15478	15588	20939	20939					0.09710772101743714
IIEYKNIKN	9	Unmodified	_IIEYKNIKN_					0	0	0		tr|U7SJ33|U7SJ33_FUSNUHTHaraC/xylS-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02075PE=4SV=1	tr|U7SJ33|U7SJ33_FUSNUHTHaraC/xylS-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02075PE=4SV=1	tr|U7SJ33|U7SJ33_FUSNUHTHaraC/xylS-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02075PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	379.2889099121094	3	378.888763	1133.64446	0.74851	0.0002836	-0.50456	-0.00019117	0.24395	9.243E-05	378.88855021396455	38.857	0.45708	38.857	38.679	39.136	0					22	8	3	0	0	0	0.3489	1	13237	13237		27.223	3.4335	1	8514400			21362	29442	15479	15589	20940	20940					0.08298274057187882
IIFEDEILKT	10	Unmodified	_IIFEDEILKT_					0	0	0			REV__nc|ENSG00000145241|Q03188-2|CENPC	REV__nc|ENSG00000145241|Q03188-2|CENPC	MULTI-SECPEP	A375_MHC_IP_R2	2	407.1496276855469	3	407.563945	1219.67001	-0.19059	-7.7678E-05	0.74092	0.00030197	0.55033	0.00022429	407.56419944249234	65.967	0.40823	66.706	66.425	66.833	0.73811					13	7	3	0	0	0	0.8528	1	25045	25045		7.0371	1.1689	1	681810	+		21363	19467	15480	15590	20941	20941					0.06895703788927676
IIFHAGYSL	9	Unmodified	_IIFHAGYSL_					0	0	0		ENSG00000065923|ENST00000616978|SLC9A7;nc|ENSG00000065923|Q96T83|SLC9A7;ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000065923|ENST00000616978|SLC9A7	ENSG00000065923|ENST00000616978|SLC9A7	MULTI-MSMS	A375_MHC_IP_R1	1	510.6749572753906	2	510.779285	1019.54402	-0.39188	-0.00020016	-1.1343	-0.00057935	-1.5261	-0.00077952	510.7784056514751	101.44	1.0126	101.44	101.04	102.05	0					36	19	4	0	0	0	0.5339	1	37415	37415		18.135	1.1927	1	2180400			21364	1396	15481	15591	20942	20942					0.03502661794186679
IIFIVFYLY	9	Unmodified	_IIFIVFYLY_					0	0	0			REV__nc|ENSG00000144285|P35498-3|SCN1A;REV__nc|ENSG00000136531|Q99250-2|SCN2A;REV__ENSG00000185313|ENST00000449082|SCN10A;REV__ENSG00000007314|ENST00000435607|SCN4A	REV__ENSG00000185313|ENST00000449082|SCN10A	MSMS	A375_MHC_IP_R1	1	595.8839111328125	2	595.846636	1189.67872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.828	1	98.828	98.328	99.328	0								0	0	0	0.15486	1	36308	36308		5.2307	0	1		+		21365	18945;21888;19415;16156	15482	15592	20943	20943					0.09146722216087255
IIFKRLLKI	9	Unmodified	_IIFKRLLKI_					0	0	0		PIWIL1|p.R217K|1|0.41|ENSG00000125207|chr12:130347059-130347059|G/A|missense_variant	PIWIL1|p.R217K|1|0.41|ENSG00000125207|chr12:130347059-130347059|G/A|missense_variant	PIWIL1|p.R217K|1|0.41|ENSG00000125207|chr12:130347059-130347059|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	572.3828125	2	572.402444	1142.79034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.25	1	102.02	101.52	102.52	0.76428								0	0	0	0.15486	1	38381	38381		2.3027	1.7012	1				21366	15183	15483	15593	20944	20944					0.2246520136388881
IIFLNLRIF	9	Unmodified	_IIFLNLRIF_					0	0	0		ENST00000334529.9_1_3:112184817-112184898:-|nuORF	ENST00000334529.9_1_3:112184817-112184898:-|nuORF	ENST00000334529.9_1_3:112184817-112184898:-|nuORF	MSMS	A375_MHC_IP_R1	1	383.6170654296875	3	383.57786	1147.71175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.783	1	42.783	42.283	43.283	0								0	0	0	0.15486	1	14841	14841		4.5289	2.0304	1				21367	10795	15484	15594	20945	20945					0.14380349058797037
IIFLQGTEV	9	Unmodified	_IIFLQGTEV_					0	0	0		nc|ENSG00000136111|O60343-4|TBC1D4;nc|ENSG00000136111|O60343-5|TBC1D4;nc|ENSG00000136111|O60343-2|TBC1D4;nc|ENSG00000136111|O60343-3|TBC1D4;ENSG00000136111|ENST00000377636|TBC1D4	nc|ENSG00000136111|O60343-4|TBC1D4	nc|ENSG00000136111|O60343-4|TBC1D4	MULTI-MSMS	A375_MHC_IP_R1	1	510.1866760253906	2	510.292225	1018.5699	-0.33197	-0.0001694	-0.18376	-9.3772E-05	-0.51574	-0.00026318	510.292054670202	72.599	1.5706	72.599	71.917	73.488	0					84	30	5	0	0	0	0.2487	1	26303	26303		34.402	6.7729	1	56547000			21368	4753	15485	15595	20946	20946					0.061355112458159056
IIFLRGRV	8	Unmodified	_IIFLRGRV_					0	0	0			REV__nc|ENSG00000085224|P46100-2|ATRX	REV__nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	A375_MHC_IP_R1	1	487.71881103515625	2	487.318912	972.62327	-0.61702	-0.00030068	0.0033591	1.6369E-06	-0.61366	-0.00029905	487.3187693988149	146.41	0.38048	146.41	146.18	146.56	0					74	39	3	0	0	0	0.77839	1	56014	56014		0.79363	0.79363	1	123330	+		21369	16830	15486	15596	20947	20947					0.13586353538983076
IIFNREKV	8	Unmodified	_IIFNREKV_					0	0	0		ENSG00000169302|ENST00000397936|STK32A;STK32A|p.F359L|1|0.62|ENSG00000169302|chr5:147383483-147383483|T/C|missense_variant	ENSG00000169302|ENST00000397936|STK32A	ENSG00000169302|ENST00000397936|STK32A	MULTI-SECPEP	A375_MHC_IP_R1	1	509.7035827636719	2	509.805834	1017.59712	-0.51993	-0.00026506	-0.27114	-0.00013823	-0.79107	-0.00040329	509.8057160948656	81.034	0.65957	81.034	80.744	81.404	0					17	12	2	0	0	0	0.93416	1	29593	29593		5.2307	1.9494	1	2530200			21370	7398	15487	15597	20948	20948					0.08902039576844345
IIFVPVPQL	9	Unmodified	_IIFVPVPQL_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000479123.1_1_2:3623223-3624265:+|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MULTI-MSMS	A375_MHC_IP_R1	1	1025.8123779296875	1	1025.63938	1024.6321	-0.063406	-6.5032E-05	-0.16078	-0.00016491	-0.22419	-0.00022994	1025.6388729528096	131.96	0.15092	131.96	131.88	132.03	0					4	2	2	0	0	0	0.060021	1	50873	50873		60.39	28.273	1	5353300			21371	7653	15488	15598	20949	20949					0.12077282384802857
IIFVPVPQL	9	Unmodified	_IIFVPVPQL_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000479123.1_1_2:3623223-3624265:+|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MULTI-SECPEP	A375_MHC_IP_R1	1	513.6867065429688	2	513.323328	1024.6321	-0.73337	-0.00037645	-0.045163	-2.3183E-05	-0.77853	-0.00039964	513.3233055314375	131.96	0.15092	131.96	131.88	132.03	0					6	2	3	0	0	0	0.75466	1	50854	50854		7.9102	7.9102	1	4960000			21372	7653	15488	15598	20950	20950					0.12077282384802857
IIFVPVPQL	9	Unmodified	_IIFVPVPQL_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000479123.1_1_2:3623223-3624265:+|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MULTI-MSMS	A375_MHC_IP_R2	2	1026.1251220703125	1	1025.63938	1024.6321	0.061955	6.3543E-05	-0.94176	-0.00096591	-0.87981	-0.00090237	1025.6386139561996	131.79	0.20242	131.98	131.85	132.05	0.18953					5	3	2	0	0	0	0.050162	1	51835	51835		64.236	30.049	1	4375200			21373	7653	15488	15598	20951	20951					0.12077282384802857
IIFVPVPQL	9	Unmodified	_IIFVPVPQL_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000479123.1_1_2:3623223-3624265:+|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MULTI-MATCH	A375_MHC_IP_R2	2		2	513.323328	1024.6321	-0.73008	-0.00037477	-0.022371	-1.1484E-05	-0.75245	-0.00038625	513.3232074261163	131.79	0.20242	131.98	131.85	132.05	0.18953	0.0088752	1.1668E-05	NaN	7.9102	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2144900			21374	7653	15488	15598							0.12077282384802857
IIFWFFFQNLF	11	Unmodified	_IIFWFFFQNLF_					0	0	0		ENST00000486860.5_1_7:87838471-87849341:-|nuORF	ENST00000486860.5_1_7:87838471-87849341:-|nuORF	ENST00000486860.5_1_7:87838471-87849341:-|nuORF	MSMS	A375_MHC_IP_R1	1	507.98040771484375	3	507.935825	1520.78564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.825	1	46.825	46.325	47.325	0								0	0	0	0.1635	1	16449	16449		0.50596	0.051438	1				21375	12587	15489	15599	20952	20952					0.046082724304824296
IIGDEYWRCLI	11	Unmodified	_IIGDEYWRCLI_					0	0	0			REV__PGBD1|p.G691E|1|0.53|ENSG00000137338|chr6:28301926-28301926|G/A|missense_variant	REV__PGBD1|p.G691E|1|0.53|ENSG00000137338|chr6:28301926-28301926|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	691.2495727539062	2	690.852655	1379.69076	-0.40846	-0.00028219	-3.5499	-0.0024525	-3.9584	-0.0027347	690.8500931065024	94.974	0.30256	95.725	95.533	95.836	0.75045					6	5	2	0	0	0	0.67989	1	36094	36094		17.113	3.2068	1	1375400	+		21376	27769	15490	15600	20953	20953					0.016099708969704807
IIGEETSME	9	Unmodified	_IIGEETSME_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	A375_MHC_IP_R2	2	505.13128662109375	2	504.73134	1007.44813	-0.53932	-0.00027221	0.8552	0.00043165	0.31588	0.00015944	504.73174622948176	95.517	0.9691	96.268	95.836	96.805	0.75045					29	18	3	0	0	0	0.58271	1	36269	36269		26.884	1.4843	1	2659400	+		21377	16747	15491	15601	20954	20954					-0.05529898898862484
IIGGFEAY	8	Unmodified	_IIGGFEAY_					0	0	0		ENST00000547581.5_1_12:48529049-48539488:+|nuORF;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;nc|ENSG00000152556|P08237-2|PFKM;ENSG00000067057|ENST00000381125|PFKP;nc|ENSG00000067057|Q01813-2|PFKP	ENST00000547581.5_1_12:48529049-48539488:+|nuORF;ENSG00000067057|ENST00000381125|PFKP	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	MSMS	A375_MHC_IP_R1	1	435.2821044921875	2	435.223811	868.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.753	1	95.753	95.253	96.253	0								0	0	0	0.16876	1	35194	35194		10.183	0	1				21378	5973;1424	15492	15602	20955	20955					-0.006409779139175953
IIGLPLVYL	9	Unmodified	_IIGLPLVYL_					0	0	0			REV__ENSG00000185149|ENST00000329476|NPY2R	REV__ENSG00000185149|ENST00000329476|NPY2R	MULTI-SECPEP	A375_MHC_IP_R2	2	501.225341796875	2	500.825704	999.636855	-0.47968	-0.00024023	0.037873	1.8968E-05	-0.4418	-0.00022127	500.82582599135156	134.48	0.20238	134.62	134.49	134.7	0.13901					5	3	2	0	0	0	0.64653	1	52929	52929		9.3474	0	1	2530300	+		21379	21874	15493	15603	20956	20956					0.13702166527559712
IIGRLLEV	8	Unmodified	_IIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-SECPEP	A375_MHC_IP_R1	1	457.1978759765625	2	456.797478	911.580402	-0.12374	-5.6523E-05	0.15995	7.3063E-05	0.036209	1.654E-05	456.7974704000394	82.015	0.66061	82.015	81.758	82.418	0					24	12	3	0	0	0	0.73227	1	29965	29965		46.021	8.047	1	3238800			21380	7718	15494	15604	20957	20957					0.1210753869090695
IIHELTQKTQD	11	Unmodified	_IIHELTQKTQD_					0	0	0		ENSG00000165953|ENST00000677451|SERPINA12	ENSG00000165953|ENST00000677451|SERPINA12	ENSG00000165953|ENST00000677451|SERPINA12	MULTI-MSMS	A375_MHC_IP_R1	1	442.8966064453125	3	442.573503	1324.69868	-0.1597	-7.0677E-05	-0.020343	-9.0032E-06	-0.18004	-7.9681E-05	442.90777817872043	37.02	0.4033	37.02	36.795	37.198	0					11	7	2	0	0	0	0.73149	1	12399	12399		7.4771	3.89	1	1186600			21381	7009	15495	15605	20958	20958					0.04931821418085747
IIHELTQKTQD	11	Unmodified	_IIHELTQKTQD_					0	0	0		ENSG00000165953|ENST00000677451|SERPINA12	ENSG00000165953|ENST00000677451|SERPINA12	ENSG00000165953|ENST00000677451|SERPINA12	MULTI-MSMS	A375_MHC_IP_R2	2	442.6531982421875	3	442.573503	1324.69868	-0.48079	-0.00021279	0.31299	0.00013852	-0.1678	-7.4265E-05	442.57365567897955	36.053	0.30731	36.817	36.638	36.946	0.76338					8	5	2	0	0	0	0.73439	2	13067	13067;13123		4.7159	1.3963	1	2763200			21382	7009	15495	15605	20959;20960	20959					0.04931821418085747
IIHELTQKTQD	11	Unmodified	_IIHELTQKTQD_					0	0	0		ENSG00000165953|ENST00000677451|SERPINA12	ENSG00000165953|ENST00000677451|SERPINA12	ENSG00000165953|ENST00000677451|SERPINA12	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	442.573503	1324.69868	-0.48079	-0.00021279	0.31299	0.00013852	-0.1678	-7.4265E-05	442.57365567897955	36.053	0.30731	36.817	36.638	36.946	0.76338	-0.10181	0.00010719	NaN	7.4771	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2763200			21383	7009	15495	15605							0.04931821418085747
IIHFRYKNRQR	11	Unmodified	_IIHFRYKNRQR_					0	0	0			REV__ENSG00000165312|ENST00000376495|OTUD1	REV__ENSG00000165312|ENST00000376495|OTUD1	MSMS	A375_MHC_IP_R2	2	511.2412109375	3	510.963659	1529.86915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.232	1	75.97	75.47	76.47	0.73752								0	0	0	0.16332	1	28555	28555		1.4551	0.12547	1		+		21384	20573	15496	15606	20961	20961					0.12540821650873113
IIHHHCQAQ	9	Unmodified	_IIHHHCQAQ_					0	0	0			REV__nc|ENSG00000124429|Q8WVV4-3|POF1B	REV__nc|ENSG00000124429|Q8WVV4-3|POF1B	MSMS	A375_MHC_IP_R1	1	543.673583984375	2	543.766717	1085.51888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.433	1	99.433	98.933	99.933	0								0	0	0	0.15486	1	36526	36526		13.508	1.8676	1		+		21385	18304	15497	15607	20962	20962					-0.020457162800539663
IIIDSVPEV	9	Unmodified	_IIIDSVPEV_					0	0	0		ENSG00000174306|ENST00000683867|ZHX3;nc|ENSG00000174306|Q9H4I2-2|ZHX3	ENSG00000174306|ENST00000683867|ZHX3	ENSG00000174306|ENST00000683867|ZHX3	MULTI-SECPEP	A375_MHC_IP_R1	1	493.1838684082031	2	492.784233	983.553913	-0.31254	-0.00015401	0.24265	0.00011958	-0.069881	-3.4436E-05	492.78430230390774	103.95	0.9144	103.95	103.63	104.54	0					44	17	3	0	0	0	0.050875	1	38142	38142		85.357	21.12	1	12727000			21386	7869	15498	15608	20963	20963					0.06147805008913565
IIIDSVPEV	9	Unmodified	_IIIDSVPEV_					0	0	0		ENSG00000174306|ENST00000683867|ZHX3;nc|ENSG00000174306|Q9H4I2-2|ZHX3	ENSG00000174306|ENST00000683867|ZHX3	ENSG00000174306|ENST00000683867|ZHX3	MULTI-SECPEP	A375_MHC_IP_R2	2	493.1839599609375	2	492.784233	983.553913	-0.48964	-0.00024129	-0.30731	-0.00015144	-0.79696	-0.00039273	492.78399861077065	103.2	1.0163	103.96	103.63	104.65	0.76428					42	19	3	0	0	0	0.050875	1	39038	39038		85.357	21.12	1	13038000			21387	7869	15498	15608	20964	20964					0.06147805008913565
IIIEDLLEA	9	Unmodified	_IIIEDLLEA_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	A375_MHC_IP_R1	1	1028.1102294921875	1	1028.5874	1027.58013	-0.039945	-4.1087E-05	3.5276	0.0036285	3.4877	0.0035874	1028.5906651076339	129.93	0.30252	129.93	129.8	130.11	0					8	5	2	0	0	0	0.20567	1	50012	50012		46.021	0	1	8208200			21388	1916	15499	15609	20965	20965					0.06744074180369353
IIIGGVATV	9	Unmodified	_IIIGGVATV_					0	0	0		ENSG00000179918|ENST00000478753|SEPHS2	ENSG00000179918|ENST00000478753|SEPHS2	ENSG00000179918|ENST00000478753|SEPHS2	MULTI-MSMS	A375_MHC_IP_R1	1	843.4254150390625	1	842.534581	841.527304	-0.49427	-0.00041644	0.22481	0.00018941	-0.26946	-0.00022703	842.5346831726542	94.879	0.91774	94.879	94.497	95.415	0					35	17	3	0	0	0	0.010002	1	34899	34899		123.1	41.232	1	14868000			21389	8264	15500	15610	20966	20966					0.1002016090824327
IIIGGVATV	9	Unmodified	_IIIGGVATV_					0	0	0		ENSG00000179918|ENST00000478753|SEPHS2	ENSG00000179918|ENST00000478753|SEPHS2	ENSG00000179918|ENST00000478753|SEPHS2	MULTI-MATCH	A375_MHC_IP_R2	2		1	842.534581	841.527304	-0.53348	-0.00044947	0.10939	9.2166E-05	-0.42408	-0.00035731	842.5344836915467	93.951	0.81204	94.696	94.412	95.224	0.74474	-0.091923	-6.7855E-05	NaN	123.1	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12008000			21390	8264	15500	15610							0.1002016090824327
IIILLILVLM	10	Unmodified	_IIILLILVLM_					0	0	0		nc|ENSG00000170558|P19022-2|CDH2;ENSG00000170558|ENST00000269141|CDH2	nc|ENSG00000170558|P19022-2|CDH2	nc|ENSG00000170558|P19022-2|CDH2	MSMS	A375_MHC_IP_R1	1	577.5262451171875	2	577.403264	1152.79198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.448	1	92.448	91.948	92.948	0								0	0	0	0.15585	1	33975	33975		1.8442	1.3859	1				21391	7521	15501	15611	20967	20967					0.2216907433760298
IIINERQRLIN	11	Unmodified	_IIINERQRLIN_					0	0	0		ENST00000556739.5_1_14:92918938-92928484:+|nuORF;ENST00000526482.1_1_14:92920194-92959969:+|nuORF;nc|ENSG00000140090|Q8NFF2-4|SLC24A4;nc|ENSG00000140090|Q8NFF2-2|SLC24A4;nc|ENSG00000140090|Q8NFF2-3|SLC24A4;ENSG00000140090|ENST00000532405|SLC24A4	ENST00000556739.5_1_14:92918938-92928484:+|nuORF	ENST00000556739.5_1_14:92918938-92928484:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	691.8172607421875	2	691.417343	1380.82013	-0.48863	-0.00033785	0.53711	0.00037137	0.048475	3.3517E-05	691.417246000275	149.2	2.2072	149.22	147.81	150.01	0.018707					277	82	5	0	0	0	0.739	1	58043	58043		0.96228	0.65524	1	1469200			21392	5126	15502	15612	20968	20968					0.1449548857128775
IIIPEIQKV	9	Unmodified	_IIIPEIQKV_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;ENST00000469700.1_1_20:47707305-47712721:+|nuORF	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-SECPEP	A375_MHC_IP_R1	1	527.2389526367188	2	526.839342	1051.66413	-0.69866	-0.00036808	0.017673	9.311E-06	-0.68099	-0.00035877	526.839275290347	84.919	1.3753	84.919	84.545	85.921	0					57	26	4	0	0	0	0.14572	1	31062	31062		62.573	16.873	1	31739000			21393	3884	15503	15613	20969	20969					0.14036650067941991
IIIPEIQKV	9	Unmodified	_IIIPEIQKV_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;ENST00000469700.1_1_20:47707305-47712721:+|nuORF	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1263427734375	2	526.839342	1051.66413	-0.38423	-0.00020243	-0.24877	-0.00013106	-0.63301	-0.00033349	526.8391097353782	84.103	1.3263	84.842	84.458	85.784	0.73962					62	25	4	0	0	0	0.046478	1	31956	31956		82.529	14.449	1	38795000			21394	3884	15503	15613	20970	20970					0.14036650067941991
IIIPIKRAKL	10	Unmodified	_IIIPIKRAKL_					0	0	0			REV__ENSG00000100142|ENST00000442738|POLR2F	REV__ENSG00000100142|ENST00000442738|POLR2F	MULTI-MSMS	A375_MHC_IP_R2	2	583.0299072265625	2	582.913176	1163.8118	-0.31399	-0.00018303	2.4563	0.0014318	2.1423	0.0012488	583.415764823237	84.307	0.20341	85.047	84.971	85.175	0.73962					5	3	2	0	0	0	0.72658	1	32018	32018		0.40072	0	1	1298600	+		21395	17053	15504	15614	20971	20971					0.2364458639260647
IIIRSVSNW	9	Unmodified	_IIIRSVSNW_					0	0	0			REV__nc|ENSG00000164932|Q96CG8-3|CTHRC1	REV__nc|ENSG00000164932|Q96CG8-3|CTHRC1	MULTI-SECPEP	A375_MHC_IP_R2	2	544.715576171875	2	544.316566	1086.61858	-0.82318	-0.00044807	-1.9572	-0.0010653	-2.7804	-0.0015134	544.3154466571041	74.236	0.55825	74.973	74.706	75.264	0.73751					16	10	3	0	0	0	0.50702	1	28160	28160		32.305	6.9062	1	2669300	+		21396	27329	15505	15615	20972	20972					0.07873424605554646
IIISKLLLTLF	11	Unmodified	_IIISKLLLTLF_					0	0	0		ENST00000585682.5_1_4:159047074-159047500:-|nuORF	ENST00000585682.5_1_4:159047074-159047500:-|nuORF	ENST00000585682.5_1_4:159047074-159047500:-|nuORF	MSMS	A375_MHC_IP_R1	1	425.2959289550781	3	425.287975	1272.8421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.653	1	74.653	74.153	75.153	0								0	0	0	0.16224	1	27193	27193		7.0371	2.8476	1				21397	13721	15506	15616	20973	20973					0.21658900267129866
IIISKLLLTLF	11	Unmodified	_IIISKLLLTLF_					0	0	0		ENST00000585682.5_1_4:159047074-159047500:-|nuORF	ENST00000585682.5_1_4:159047074-159047500:-|nuORF	ENST00000585682.5_1_4:159047074-159047500:-|nuORF	MSMS	A375_MHC_IP_R2	2	425.29534912109375	3	425.287975	1272.8421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.816	1	74.552	74.052	75.052	0.73647								0	0	0	0.16224	1	28019	28019		7.0371	2.8476	1				21398	13721	15506	15616	20974	20974					0.21658900267129866
IIIVWICLL	9	Unmodified	_IIIVWICLL_					0	0	0			REV__ENST00000368124.8_1_1:159170782-159171025:+|nuORF	REV__ENST00000368124.8_1_1:159170782-159171025:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	543.7427368164062	2	543.343206	1084.67186	-1.2137	-0.00065946	-0.44955	-0.00024426	-1.6633	-0.00090372	543.3430791415341	59.085	0.55801	59.832	59.489	60.047	0.74714					24	10	3	0	0	0	0.64653	1	22339	22339		9.3474	9.3474	1	5004800	+		21399	23986	15507	15617	20975	20975					0.13291086063850344
IIKAFPKEW	9	Unmodified	_IIKAFPKEW_					0	0	0			REV__nc|ENSG00000121270|Q96J66-2|ABCC11	REV__nc|ENSG00000121270|Q96J66-2|ABCC11	MSMS	A375_MHC_IP_R2	2	377.9257507324219	3	377.890215	1130.64882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.913	1	45.682	45.182	46.182	0.7691								0	0	0	0.15486	1	16774	16774		7.609	0.13188	1		+		21400	18153	15508	15618	20976	20976					0.08871783270751621
IIKGQKQLN	9	Unmodified	_IIKGQKQLN_					0	0	0			REV__ENSG00000204740|ENST00000454679|MALRD1	REV__ENSG00000204740|ENST00000454679|MALRD1	MULTI-SECPEP	A375_MHC_IP_R2	2	521.7234497070312	2	521.324391	1040.63423	-0.75239	-0.00039224	-0.075293	-3.9252E-05	-0.82768	-0.00043149	521.324278496011	72.472	0.45647	73.207	72.973	73.429	0.7354					13	8	2	0	0	0	0.71541	1	27510	27510		3.9444	0	1	1891100	+		21401	22538	15509	15619	20977	20977					0.11553711122610366
IIKLIYIVL	9	Unmodified	_IIKLIYIVL_					0	0	0			REV__ENST00000280362.7_1_11:112104281-112104485:+|nuORF	REV__ENST00000280362.7_1_11:112104281-112104485:+|nuORF	MSMS	A375_MHC_IP_R1	1	363.2852783203125	3	363.254494	1086.74165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.273	1	32.273	31.773	32.773	0								0	0	0	0.15486	1	10412	10412		0.26902	0	1		+		21402	23313	15510	15620	20978	20978					0.2017528800411128
IIKLKRQPWEY	11	Unmodified	_IIKLKRQPWEY_					0	0	0			REV__tr|U7SSE4|U7SSE4_FUSNUUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murEPE=3SV=1	REV__tr|U7SSE4|U7SSE4_FUSNUUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murEPE=3SV=1	MSMS	A375_MHC_IP_R1	1	737.83154296875	2	737.432461	1472.85037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.26	1	145.26	144.76	145.76	0								0	0	0	0.16354	1	55688	55688		0.30703	0.30703	1		+		21403	28425	15511	15621	20979	20979					0.1328584723644326
IIKLKRQPWEY	11	Unmodified	_IIKLKRQPWEY_					0	0	0			REV__tr|U7SSE4|U7SSE4_FUSNUUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murEPE=3SV=1	REV__tr|U7SSE4|U7SSE4_FUSNUUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murEPE=3SV=1	MSMS	A375_MHC_IP_R1	1	737.7500610351562	2	737.432461	1472.85037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.33	1	145.33	144.83	145.83	0								0	0	0	0.16354	1	55712	55712		0.30703	0.30703	1		+		21404	28425	15511	15621	20980	20980					0.1328584723644326
IIKNQSAV	8	Unmodified	_IIKNQSAV_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	A375_MHC_IP_R1	1	437.154052734375	2	436.763635	871.512717	-0.36882	-0.00016109	0.43702	0.00019088	0.068199	2.9787E-05	436.7637879722223	66.606	0.50935	66.606	66.326	66.836	0					14	9	2	0	0	0	0.85124	1	24028	24028		19.439	5.9311	1	1639700	+		21405	16777	15512	15622	20981	20981					0.071820887600893
IIKPFSPGI	9	Unmodified	_IIKPFSPGI_					0	0	0			REV__tr|U7SSI3|U7SSI3_FUSNUDUF3100domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01460PE=4SV=1	REV__tr|U7SSI3|U7SSI3_FUSNUDUF3100domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01460PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	486.6815490722656	2	486.299853	970.585153	-0.39189	-0.00019057	-0.39429	-0.00019174	-0.78618	-0.00038232	486.2996768874096	91.208	0.45554	91.208	90.997	91.452	0					15	8	2	0	0	0	0.56537	1	33507	33507		22.736	1.1993	1	1584500	+		21406	28431	15513	15623	20982	20982					0.09868422833653767
IIKVINEGK	9	Unmodified	_IIKVINEGK_					0	0	0			REV__tr|U7SYT7|U7SYT7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00929PE=4SV=1	REV__tr|U7SYT7|U7SYT7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00929PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	507.205078125	2	507.321317	1012.62808	-0.30185	-0.00015314	-0.72907	-0.00036987	-1.0309	-0.00052301	507.3209249652823	78.023	0.30634	78.023	77.844	78.15	0					9	5	2	0	0	0	0.47368	1	28479	28479		20.454	8.8133	1	1070700	+		21407	28634	15514	15624	20983	20983					0.12227192891100458
IIKVKVGSGLD	11	Unmodified	_IIKVKVGSGLD_					0	0	0			REV__ENST00000494039.1_X:52241120-52243863:+|nuORF	REV__ENST00000494039.1_X:52241120-52243863:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	376.9501647949219	3	376.904413	1127.69141	0.30175	0.00011373	0.57735	0.00021761	0.87911	0.00033134	377.2401027771845	40.921	0.40369	40.921	40.609	41.013	0					10	7	2	0	0	0	0.73404	1	14017	14017		5.0475	1.1712	1	856490	+		21408	15781	15515	15625	20984	20984					0.13267133608337645
IILCLVFRKRR	11	Unmodified	_IILCLVFRKRR_					0	0	0			REV__ENST00000233557.7_1_2:27656618-27656883:+|nuORF	REV__ENST00000233557.7_1_2:27656618-27656883:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	355.3801574707031	4	354.980059	1415.89113	-0.52897	-0.00018777	0.14836	5.2665E-05	-0.38061	-0.00013511	354.9801847584388	61.373	1.059	62.118	61.869	62.928	0.74503					34	20	3	0	0	0	0.73881	1	23287	23287		0.50596	0.50596	1	1653200	+		21409	23078	15516	15626	20985	20985					0.19981910075080123
IILEKKFS	8	Unmodified	_IILEKKFS_					0	0	0		nc|ENSG00000022567|Q5BKX6-3|SLC45A4	nc|ENSG00000022567|Q5BKX6-3|SLC45A4	nc|ENSG00000022567|Q5BKX6-3|SLC45A4	MULTI-MSMS	A375_MHC_IP_R2	2	489.5007629394531	2	489.305136	976.595718	-0.92286	-0.00045156	-0.00087042	-4.259E-07	-0.92373	-0.00045199	489.3049873379054	59.761	0.40386	60.508	60.349	60.753	0.74714					11	7	2	0	0	0	0.74945	1	22581	22581		20.454	0	1	843130			21410	14457	15517	15627	20986	20986					0.10648405488097978
IILGGVKAV	9	Unmodified	_IILGGVKAV_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	A375_MHC_IP_R1	1	435.69427490234375	2	435.294571	868.574589	-0.098336	-4.2805E-05	-0.18696	-8.1385E-05	-0.2853	-0.00012419	435.2944110610749	62.122	0.56406	62.122	61.839	62.403	0					16	10	2	0	0	0	0.27715	1	22409	22409		32.305	2.0807	1	3566100			21411	4297	15518	15628	20987	20987					0.13504440179235644
IILGGVKAV	9	Unmodified	_IILGGVKAV_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	A375_MHC_IP_R2	2	435.6939697265625	2	435.294571	868.574589	-0.5811	-0.00025295	-0.11516	-5.013E-05	-0.69626	-0.00030308	435.2944725968107	61.124	0.55424	61.869	61.668	62.223	0.74503					18	10	2	0	0	0	0.27715	1	23172	23172		32.305	2.0807	1	2651300			21412	4297	15518	15628	20988	20988					0.13504440179235644
IILRDPLFV	9	Unmodified	_IILRDPLFV_					0	0	0			REV__ENST00000531801.5_1_11:82571134-82612695:-|nuORF	REV__ENST00000531801.5_1_11:82571134-82612695:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	543.7383422851562	2	543.33951	1084.66447	-0.76945	-0.00041807	-0.13912	-7.5587E-05	-0.90856	-0.00049366	543.3393030344939	119.64	0.66063	120.17	119.94	120.6	0.5321					31	12	3	0	0	0	0.4875	1	45582	45582		28.487	5.3384	1	32207000	+		21413	25857	15519	15629	20989	20989					0.12552069787784603
IIMDAIKCV	9	Unmodified	_IIMDAIKCV_					0	0	0		ENSG00000182359|ENST00000531837|KBTBD3	ENSG00000182359|ENST00000531837|KBTBD3	ENSG00000182359|ENST00000531837|KBTBD3	MULTI-SECPEP	A375_MHC_IP_R2	2	503.5071105957031	2	503.277206	1004.53986	-0.67964	-0.00034205	-1.3158	-0.0006622	-1.9954	-0.0010042	503.2762296909604	129.95	0.5578	130.17	129.89	130.45	0.21419					27	10	4	0	0	0	0.71541	1	50967	50967		11.64	0	1	11419000			21414	8402	15520	15630	20990	20990					0.03777112984607811
IIMDSFEIL	9	Unmodified	_IIMDSFEIL_					0	0	0		tr|U7SNJ8|U7SNJ8_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02016PE=3SV=1	tr|U7SNJ8|U7SNJ8_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02016PE=3SV=1	tr|U7SNJ8|U7SNJ8_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02016PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	541.2019653320312	2	540.785918	1079.55728	-0.81272	-0.00043951	-0.63448	-0.00034312	-1.4472	-0.00078263	540.7855878352121	131.89	0.25163	132.08	131.9	132.15	0.18953					7	4	2	0	0	0	0.13491	1	51855	51855		44.407	12.102	1	3549700			21415	29554	15521	15631	20991	20991					0.02068731791268874
IIMILNSV	8	Unmodified	_IIMILNSV_					0	0	0			REV__ENST00000530334.5_1_11:76579304-76726162:+|nuORF	REV__ENST00000530334.5_1_11:76579304-76726162:+|nuORF	MSMS	A375_MHC_IP_R1	1	451.65264892578125	2	451.772614	901.530675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.887	1	65.887	65.387	66.387	0								0	0	0	0.16876	1	23858	23858		15.768	1.1865	1		+		21416	16704	15522	15632	20992	20992					0.07597087690589888
IIMSLKTVAV	10	Unmodified	_IIMSLKTVAV_					0	0	0		ENSG00000119737|ENST00000394705|GPR75	ENSG00000119737|ENST00000394705|GPR75	ENSG00000119737|ENST00000394705|GPR75	MSMS	A375_MHC_IP_R2	2	358.6199035644531	3	358.891227	1073.65185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.622	1	60.369	59.869	60.869	0.74714								0	0	0	0.15513	1	22563	22563		4.1895	1.1943	1				21417	3618	15523	15633	20993	20993					0.11797290333242927
IINCDGFYL	9	Unmodified	_IINCDGFYL_					0	0	0		nc|ENSG00000117586|P23510-2|TNFSF4;ENSG00000117586|ENST00000281834|TNFSF4	nc|ENSG00000117586|P23510-2|TNFSF4	nc|ENSG00000117586|P23510-2|TNFSF4	MULTI-SECPEP	A375_MHC_IP_R1	1	529.15283203125	2	529.254785	1056.49502	-0.58453	-0.00030937	0.90512	0.00047904	0.32059	0.00016967	529.2553025355127	95.879	0.55534	95.879	95.565	96.12	0					19	10	3	0	0	0	0.71541	1	35216	35216		16.942	1.0951	1	1883000			21418	3494	15524	15634	20994	20994					-0.030969945570632262
IINFETIHAV	10	Unmodified	_IINFETIHAV_					0	0	0			REV__ENST00000463635.1_1_2:98736095-98738506:+|nuORF	REV__ENST00000463635.1_1_2:98736095-98738506:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	385.6089172363281	3	386.21688	1155.62881	-0.21007	-8.1133E-05	-1.2821	-0.00049516	-1.4922	-0.0005763	386.2166456608457	29.353	0.5078	29.353	28.996	29.504	0					14	9	2	0	0	0	0.93232	1	9169	9169		7.4771	0.43998	1	2675300	+		21419	20873	15525	15635	20995	20995					0.057219875401415266
IINKLVTV	8	Unmodified	_IINKLVTV_					0	0	0		ENSG00000179256|ENST00000316048|SMCO3	ENSG00000179256|ENST00000316048|SMCO3	ENSG00000179256|ENST00000316048|SMCO3	MULTI-SECPEP	A375_MHC_IP_R1	1	450.69964599609375	2	450.299853	898.585153	-0.21622	-9.7362E-05	-0.0059532	-2.6807E-06	-0.22217	-0.00010004	450.2998049036163	34.497	0.30471	34.497	34.303	34.608	0					9	5	2	0	0	0	0.92636	1	11412	11412		16.942	0	1	1600900			21420	8216	15526	15636	20996	20996					0.1318042283367049
IINKVREIF	9	Unmodified	_IINKVREIF_					0	0	0			REV__UGT2B4|p.M214I|1|0.27|ENSG00000156096|chr4:69495220-69495220|C/T|missense_variant	REV__UGT2B4|p.M214I|1|0.27|ENSG00000156096|chr4:69495220-69495220|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	566.747314453125	2	566.347866	1130.68118	-0.30341	-0.00017183	0.052356	2.9652E-05	-0.25105	-0.00014218	566.3479150556813	62.167	0.4605	62.167	61.943	62.403	0					19	8	3	0	0	0	0.75519	1	22471	22471		10.074	0	1	2843900	+		21421	28947	15527	15637	20997	20997					0.12106570673745409
IINPKLVF	8	Unmodified	_IINPKLVF_					0	0	0			REV__ENST00000534562.1_1_11:9749605-9771962:+|nuORF	REV__ENST00000534562.1_1_11:9749605-9771962:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	472.18988037109375	2	472.302396	942.590239	-0.62694	-0.00029611	2.2919	0.0010824	1.6649	0.00078634	472.3034641075674	84.793	0.20524	84.793	84.647	84.852	0					6	3	2	0	0	0	0.972	1	31027	31027		5.7604	0	1	419730	+		21422	18733	15528	15638	20998	20998					0.11664726696278649
IINSIKKKL	9	Unmodified	_IINSIKKKL_					0	0	0		nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2	nc|ENSG00000154864|Q9H5I5-4|PIEZO2	nc|ENSG00000154864|Q9H5I5-4|PIEZO2	MULTI-MSMS	A375_MHC_IP_R1	1	352.9776611328125	3	352.909498	1055.70667	-0.21674	-7.649E-05	3.5136	0.00124	3.2968	0.0011635	352.911076702702	27.559	0.6057	27.559	27.381	27.987	0					18	11	2	0	0	0	0.46038	2	8468	8409;8468		20.415	5.1661	1	3844700			21423	6114	15529	15639	20999;21000	21000					0.18104045196173502
IINTKNTID	9	Unmodified	_IINTKNTID_					0	0	0		tr|U7SPA4|U7SPA4_FUSNUOMFfamilyoutermembranefactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01678PE=3SV=1	tr|U7SPA4|U7SPA4_FUSNUOMFfamilyoutermembranefactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01678PE=3SV=1	tr|U7SPA4|U7SPA4_FUSNUOMFfamilyoutermembranefactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01678PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	516.1112060546875	2	516.290214	1030.56587	-0.75164	-0.00038806	0.58928	0.00030424	-0.16235	-8.3821E-05	516.2909351813714	64.733	0.45802	65.472	65.206	65.664	0.73872					12	8	2	0	0	0	0.60917	1	24520	24520		13.906	2.2658	1	1073800			21424	29576	15530	15640	21001	21001					0.051814217520814054
IINYNKLQ	8	Unmodified	_IINYNKLQ_					0	0	0			REV__tr|U7SMA9|U7SMA9_FUSNU4-methyl-5(B-hydroxyethyl)-thiazolemonophosphatebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01884PE=4SV=1	REV__tr|U7SMA9|U7SMA9_FUSNU4-methyl-5(B-hydroxyethyl)-thiazolemonophosphatebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01884PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	502.6816711425781	2	503.290017	1004.56548	-0.64942	-0.00032685	0.3483	0.0001753	-0.30112	-0.00015155	503.2900206182947	75.753	0.45919	76.493	76.232	76.691	0.74052					14	8	2	0	0	0	0.92636	1	28723	28723		11.64	11.64	1	1452600	+		21425	28297	15531	15641	21002	21002					0.06338046822895649
IIPVTAKDL	9	Unmodified	_IIPVTAKDL_					0	0	0			REV__nc|ENSG00000121274|Q8NDF8-5|TENT4B	REV__nc|ENSG00000121274|Q8NDF8-5|TENT4B	MULTI-SECPEP	A375_MHC_IP_R1	1	485.970947265625	2	485.302593	968.590633	-0.26122	-0.00012677	-0.27143	-0.00013173	-0.53265	-0.0002585	485.3023407499973	75.287	0.45432	75.287	75.009	75.464	0					13	8	2	0	0	0	0.49205	1	27427	27427		21.537	2.28	1	1727600	+		21426	18154	15532	15642	21003	21003					0.10508101625475774
IIQEFLSKV	9	Unmodified	_IIQEFLSKV_					0	0	0		ENSG00000095002|ENST00000233146|MSH2;nc|ENSG00000095002|P43246-2|MSH2	ENSG00000095002|ENST00000233146|MSH2	ENSG00000095002|ENST00000233146|MSH2	MULTI-SECPEP	A375_MHC_IP_R2	2	539.2212524414062	2	538.82115	1075.62775	-0.77733	-0.00041884	0.72696	0.0003917	-0.050371	-2.7141E-05	538.8214441096712	89.229	0.75691	89.96	89.685	90.442	0.7318					18	14	2	0	0	0	0.16237	1	33984	33984		40.725	4.5979	1	1991400			21427	2032	15533	15643	21004	21004					0.09295773171243127
IIQEMDGV	8	Unmodified	_IIQEMDGV_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MSMS	A375_MHC_IP_R2	2	452.6475524902344	2	452.725861	903.437169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.222	1	94.967	94.467	95.467	0.74474								0	0	0	0.16876	1	35810	35810		21.747	0.87544	1				21428	8815	15534	15644	21005	21005					-0.018412564824984656
IIQEVRSAFG	10	Unmodified	_IIQEVRSAFG_					0	0	0			REV__MYO9A|p.G267R|1|0.43|ENSG00000066933|chr15:72045765-72045765|C/T|missense_variant	REV__MYO9A|p.G267R|1|0.43|ENSG00000066933|chr15:72045765-72045765|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	374.2768859863281	3	373.876746	1118.60841	0.031527	1.1787E-05	-0.071636	-2.6783E-05	-0.04011	-1.4996E-05	373.8767446859803	36.618	0.50653	36.618	36.339	36.845	0					15	9	2	0	0	0	0.90513	1	12303	12303		10.899	3.4219	1	2796400	+		21429	27073	15535	15645	21006	21006					0.05384816880314247
IIQKRTRPV	9	Unmodified	_IIQKRTRPV_					0	0	0			REV__nc|ENSG00000111602|Q9UNS1-2|TIMELESS	REV__nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-MSMS	A375_MHC_IP_R1	1	370.2730407714844	3	370.90838	1109.70331	0.23935	8.8776E-05	0.23811	8.8316E-05	0.47745	0.00017709	370.90845764204244	24.723	0.20327	24.723	24.597	24.801	0					5	3	2	0	0	0	0.69884	1	7042	7042		7.1017	1.699	1	2936000	+		21430	17678	15536	15646	21007	21007					0.15284795142179064
IIQPWKDRLLY	11	Unmodified	_IIQPWKDRLLY_					0	0	0		ENST00000402538.7_1_2:33747095-33749048:+|nuORF	ENST00000402538.7_1_2:33747095-33749048:+|nuORF	ENST00000402538.7_1_2:33747095-33749048:+|nuORF	MSMS	A375_MHC_IP_R2	2	722.62109375	2	722.919187	1443.82382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.51	1	102.27	101.77	102.77	0.76428								0	0	0	0.1629	1	38474	38474		3.5965	1.098	1				21431	11567	15537	15647	21008	21008					0.1196615834514887
IIQRVDKLL	9	Unmodified	_IIQRVDKLL_					0	0	0		nc|ENSG00000040933|Q96PE3-2|INPP4A;nc|ENSG00000040933|Q96PE3-4|INPP4A;ENSG00000040933|ENST00000409851|INPP4A;nc|ENSG00000040933|Q96PE3|INPP4A	nc|ENSG00000040933|Q96PE3-2|INPP4A	nc|ENSG00000040933|Q96PE3-2|INPP4A	MULTI-SECPEP	A375_MHC_IP_R2	2	366.0981750488281	3	366.572886	1096.69683	0.11661	4.2747E-05	0.26989	9.8934E-05	0.3865	0.00014168	366.90736981217583	74.021	0.40544	74.759	74.553	74.958	0.73752					11	7	2	0	0	0	0.74651	1	28054	28054		5.2969	0	1	633000			21432	1166	15538	15648	21009	21009					0.15234857190785078
IIQRVDKLL	9	Unmodified	_IIQRVDKLL_					0	0	0		nc|ENSG00000040933|Q96PE3-2|INPP4A;nc|ENSG00000040933|Q96PE3-4|INPP4A;ENSG00000040933|ENST00000409851|INPP4A;nc|ENSG00000040933|Q96PE3|INPP4A	nc|ENSG00000040933|Q96PE3-2|INPP4A	nc|ENSG00000040933|Q96PE3-2|INPP4A	MULTI-MATCH	A375_MHC_IP_R1	1		3	366.572886	1096.69683	0.24711	9.0585E-05	-0.10359	-3.7972E-05	0.14353	5.2613E-05	366.5728627573539	75.102	0.45491	75.102	74.857	75.312	0	0.17179	-0.0002778	NaN	5.2969	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	850520			21433	1166	15538	15648							0.15234857190785078
IIREPLTEL	9	Unmodified	_IIREPLTEL_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	A375_MHC_IP_R1	1	542.7239379882812	2	542.324057	1082.63356	-0.41792	-0.00022665	-0.0020452	-1.1092E-06	-0.41996	-0.00022775	542.3240136220126	72.261	0.75924	72.261	71.917	72.676	0					32	14	3	0	0	0	0.14554	1	26225	26225		65.474	21.701	1	4884400			21434	4099;14587;14586	15539	15649	21010	21010					0.09554871682894372
IIREPLTEL	9	Unmodified	_IIREPLTEL_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	A375_MHC_IP_R2	2	541.6373291015625	2	542.324057	1082.63356	-1.0722	-0.00058146	0.012156	6.5925E-06	-1.06	-0.00057486	542.3241160348423	71.302	0.86266	72.036	71.756	72.618	0.73421					34	16	3	0	0	0	0.062502	1	27105	27105		57.249	0	1	7547300			21435	4099;14587;14586	15539	15649	21011	21011					0.09554871682894372
IIRGDKLL	8	Unmodified	_IIRGDKLL_					0	0	0			REV__ENSG00000147251|ENST00000276202|DOCK11	REV__ENSG00000147251|ENST00000276202|DOCK11	MULTI-SECPEP	A375_MHC_IP_R1	1	464.7029113769531	2	464.302927	926.591301	0.070964	3.2949E-05	-0.30569	-0.00014194	-0.23473	-0.00010899	464.30270629366345	70.024	0.40331	70.024	69.782	70.185	0					20	7	3	0	0	0	0.60242	1	25401	25401		46.021	2.1627	1	6412700	+		21436	19581	15540	15650	21012	21012					0.125069410651804
IIRGDKLL	8	Unmodified	_IIRGDKLL_					0	0	0			REV__ENSG00000147251|ENST00000276202|DOCK11	REV__ENSG00000147251|ENST00000276202|DOCK11	MULTI-SECPEP	A375_MHC_IP_R2	2	464.702880859375	2	464.302927	926.591301	-0.4959	-0.00023025	-0.13191	-6.1247E-05	-0.62781	-0.00029149	464.3027904281428	68.902	0.50768	69.637	69.373	69.88	0.73512					25	9	4	0	0	0	0.60242	1	26084	26084		46.021	9.8939	1	9933900	+		21437	19581	15540	15650	21013	21013					0.125069410651804
IIRKAYLKD	9	Unmodified	_IIRKAYLKD_					0	0	0		PIPOX|p.E61K|1|0.15|ENSG00000179761|chr17:29044925-29044925|G/A|missense_variant	PIPOX|p.E61K|1|0.15|ENSG00000179761|chr17:29044925-29044925|G/A|missense_variant	PIPOX|p.E61K|1|0.15|ENSG00000179761|chr17:29044925-29044925|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	373.3047180175781	3	373.901003	1118.68118	0.28934	0.00010818	-0.14258	-5.3312E-05	0.14675	5.4872E-05	373.9008898750748	32.019	0.46136	32.019	31.769	32.231	0					15	8	2	0	0	0	0.76106	1	10243	10243		9.544	1.0997	1	5062300			21438	15181	15541	15651	21014	21014					0.1265857067376146
IIRKELWVRWW	11	Unmodified	_IIRKELWVRWW_					0	0	0			REV__ENST00000519528.1_1_8:103299768-103305927:-|nuORF	REV__ENST00000519528.1_1_8:103299768-103305927:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	528.2107543945312	3	528.976906	1583.90889	-0.44262	-0.00023414	-0.11323	-5.9894E-05	-0.55585	-0.00029403	529.3121700066023	79.262	0.2565	79.262	79.161	79.418	0					5	4	2	0	0	0	1.0014	1	28929	28929		0.50596	0.051438	1	468520	+		21439	25686	15542	15652	21015	21015					0.14028948601571756
IIRKKIFKRK	10	Unmodified	_IIRKKIFKRK_					0	0	0			REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF	REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF	MSMS	A375_MHC_IP_R1	1	665.8618774414062	2	665.463899	1328.91324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.52	1	118.52	118.02	119.02	0								0	0	0	0.15628	1	43668	43668		0.45834	0.057624	1		+		21440	20380	15543	15653	21016	21016					0.261944578151315
IIRKLRREQ	9	Unmodified	_IIRKLRREQ_					0	0	0			REV__ENSG00000149418|ENST00000278742|ST14	REV__ENSG00000149418|ENST00000278742|ST14	MULTI-MSMS	A375_MHC_IP_R2	2	606.7875366210938	2	606.388388	1210.76222	-0.21995	-0.00013338	-0.13344	-8.0914E-05	-0.35339	-0.00021429	606.3877613708637	144.29	0.82132	144.32	144.12	144.95	0.024414					28	18	2	0	0	0	0.75764	1	56498	56498		1.8442	0.19162	1	596040	+		21441	19678	15544	15654	21017	21017					0.165272714365301
IIRLISGDPG	10	Unmodified	_IIRLISGDPG_					0	0	0			REV__MUC6|p.S95L|1|0.31|ENSG00000184956|chr11:1031885-1031885|G/A|missense_variant	REV__MUC6|p.S95L|1|0.31|ENSG00000184956|chr11:1031885-1031885|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	520.1478881835938	2	520.808574	1039.60259	-0.81657	-0.00042527	-0.9974	-0.00051945	-1.814	-0.00094473	521.310129374487	50.326	0.40615	51.08	50.854	51.26	0.75406					9	7	2	0	0	0	0.93194	1	18899	18899		2.9952	0	1	546130	+		21442	27055	15545	15655	21018	21018					0.08437718368668357
IIRLLSPAFN	10	Unmodified	_IIRLLSPAFN_					0	0	0			REV__ENSG00000133704|ENST00000256079|IPO8	REV__ENSG00000133704|ENST00000256079|IPO8	MULTI-MSMS	A375_MHC_IP_R1	1	382.3010559082031	3	381.901003	1142.68118	0.076785	2.9324E-05	0.48416	0.0001849	0.56094	0.00021422	381.90114004771624	66.838	0.51025	66.838	66.684	67.194	0					20	9	3	0	0	0	0.7154	1	24240	24240		5.4027	0	1	1791200	+		21443	18729	15546	15656	21019	21019					0.11554570673752096
IIRLLSPAFN	10	Unmodified	_IIRLLSPAFN_					0	0	0			REV__ENSG00000133704|ENST00000256079|IPO8	REV__ENSG00000133704|ENST00000256079|IPO8	MULTI-MSMS	A375_MHC_IP_R2	2	382.301025390625	3	381.901003	1142.68118	-0.26435	-0.00010096	0.24863	9.4952E-05	-0.015721	-6.0039E-06	381.90111932589923	65.778	0.55949	66.516	66.222	66.782	0.73812					17	10	2	0	0	0	0.71946	1	24959	24959		3.5871	0	1	2151800	+		21444	18729	15546	15656	21020	21020					0.11554570673752096
IIRLLSPAFN	10	Unmodified	_IIRLLSPAFN_					0	0	0			REV__ENSG00000133704|ENST00000256079|IPO8	REV__ENSG00000133704|ENST00000256079|IPO8	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	381.901003	1142.68118	-0.26435	-0.00010096	0.24863	9.4952E-05	-0.015721	-6.0039E-06	381.90111932589923	65.778	0.55949	66.516	66.222	66.782	0.73812	-0.16095	-0.00013867	NaN	5.4027	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2151800	+		21445	18729	15546	15656							0.11554570673752096
IIRNPQQRLRW	11	Unmodified	_IIRNPQQRLRW_					0	0	0		ENST00000519528.1_1_8:103299768-103305927:-|nuORF	ENST00000519528.1_1_8:103299768-103305927:-|nuORF	ENST00000519528.1_1_8:103299768-103305927:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	493.2079772949219	3	493.960026	1478.85825	-0.34895	-0.00017237	0.60375	0.00029823	0.2548	0.00012586	493.9599123877588	77.541	0.20166	77.541	77.386	77.588	0					5	3	2	0	0	0	1.0002	1	28260	28260		0.45452	0	1	768510			21446	12979	15547	15657	21021	21021					0.13797419276579603
IIRPQNVSW	9	Unmodified	_IIRPQNVSW_					0	0	0		ENSG00000091127|ENST00000469408|PUS7;nc|ENSG00000091127|Q96PZ0-2|PUS7	ENSG00000091127|ENST00000469408|PUS7	ENSG00000091127|ENST00000469408|PUS7	MULTI-SECPEP	A375_MHC_IP_R1	1	557.2136840820312	2	556.81419	1111.61383	-0.55819	-0.00031081	-0.18816	-0.00010477	-0.74635	-0.00041558	556.8140422745429	60.566	0.40759	60.566	60.363	60.77	0					13	7	2	0	0	0	0.20451	1	21822	21822		57.722	39.576	1	2281400			21447	1969	15548	15658	21022	21022					0.062485404627977914
IIRPQNVSW	9	Unmodified	_IIRPQNVSW_					0	0	0		ENSG00000091127|ENST00000469408|PUS7;nc|ENSG00000091127|Q96PZ0-2|PUS7	ENSG00000091127|ENST00000469408|PUS7	ENSG00000091127|ENST00000469408|PUS7	MULTI-SECPEP	A375_MHC_IP_R2	2	557.2136840820312	2	556.81419	1111.61383	-1.1356	-0.00063233	0.44786	0.00024937	-0.68776	-0.00038296	556.8142782279441	59.733	0.45498	60.48	60.249	60.704	0.74714					15	8	3	0	0	0	0.20451	1	22637	22637		41.956	27.117	1	2537400			21448	1969	15548	15658	21023	21023					0.062485404627977914
IIRRLRKRVRG	11	Unmodified	_IIRRLRKRVRG_					0	0	0		ENST00000564682.5_1_16:28565295-28592384:+|nuORF	ENST00000564682.5_1_16:28565295-28592384:+|nuORF	ENST00000564682.5_1_16:28565295-28592384:+|nuORF	MSMS	A375_MHC_IP_R1	1	711.9595336914062	2	711.983853	1421.95315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.42	1	113.42	112.92	113.92	0								0	0	0	0.1636	1	41573	41573		0	0	1				21449	13538	15549	15659	21024	21024					0.25905397538417674
IISFLFKFYLE	11	Unmodified	_IISFLFKFYLE_					0	0	0		ENSG00000138356|ENST00000374700|AOX1;ENST00000485106.5_1_2:201474101-201485848:+|nuORF	ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	MULTI-SECPEP	A375_MHC_IP_R2	2	710.7990112304688	2	710.399764	1418.78498	-0.71066	-0.00050485	0.30843	0.00021911	-0.40223	-0.00028574	710.3993541869232	131.96	1.067	132.15	131.54	132.61	0.18953					68	20	4	0	0	0	0.99738	1	51986	51986		2.7352	0	1	20946000			21450	4982	15550	15660	21025	21025					0.09233432990731671
IISFYYNIRDI	11	Unmodified	_IISFYYNIRDI_					0	0	0			REV__tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1	REV__tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	473.14544677734375	3	472.922244	1415.7449	-0.72688	-0.00034376	2.5563	0.0012089	1.8294	0.00086517	473.25890911173184	50.328	0.91249	51.082	50.702	51.615	0.75406					23	17	2	0	0	0	0.99246	1	18956	18956		7.4771	2.7611	1	2948800	+		21451	28222	15551	15661	21026	21026					0.05365886320169011
IISHLSKTV	9	Unmodified	_IISHLSKTV_					0	0	0			REV__ENSG00000100304|ENST00000216129|TTLL12	REV__ENSG00000100304|ENST00000216129|TTLL12	MULTI-MSMS	A375_MHC_IP_R2	2	499.6622009277344	2	499.305667	996.596781	-0.59973	-0.00029945	0.049963	2.4947E-05	-0.54977	-0.0002745	499.30566682145474	81.944	0.96535	82.687	82.229	83.195	0.74294					38	18	3	0	0	0	0.27715	1	31069	31069		32.305	4.6767	1	7657700	+		21452	17072	15552	15662	21027	21027					0.0983461985700842
IISIAIASI	9	Unmodified	_IISIAIASI_					0	0	0		tr|U7SQR4|U7SQR4_FUSNUGlycosyltransferaseRgtA/B/C/D-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01666PE=4SV=1	tr|U7SQR4|U7SQR4_FUSNUGlycosyltransferaseRgtA/B/C/D-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01666PE=4SV=1	tr|U7SQR4|U7SQR4_FUSNUGlycosyltransferaseRgtA/B/C/D-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01666PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	451.19140625	2	450.791861	899.569169	-0.31002	-0.00013975	0.016811	7.5781E-06	-0.29321	-0.00013218	450.79176634614805	129.96	0.25215	130.17	130.05	130.3	0.2142					7	4	2	0	0	0	0.016207	1	51089	51089		109.63	16.807	1	9080200			21453	29592	15553	15663	21028	21028					0.11536716596742735
IISNPIKG	8	Unmodified	_IISNPIKG_					0	0	0			REV__nc|ENSG00000111684|Q6P1A2-2|LPCAT3	REV__nc|ENSG00000111684|Q6P1A2-2|LPCAT3	MSMS	A375_MHC_IP_R2	2	421.6593322753906	2	421.260728	840.506903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.45	1	118.11	117.61	118.61	0.65962								0	0	0	0.16876	1	44453	44453		15.847	3.3156	1		+		21454	17686	15554	15664	21029	21029					0.08026990248424681
IISQSLQSPS	10	Unmodified	_IISQSLQSPS_					0	0	0		ENSG00000218336|ENST00000511685|TENM3;ENST00000502950.1_1_4:183601480-183676413:+|nuORF	ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	MULTI-MSMS	A375_MHC_IP_R2	2	531.1852416992188	2	530.287671	1058.56079	-0.98333	-0.00052145	-2.3663	-0.0012548	-3.3496	-0.0017763	530.7866459679084	38.388	0.86845	39.163	38.739	39.607	0.77451					51	16	4	0	0	0	0.55789	1	14159	14159		24.021	1.2843	1	11780000			21455	9655	15555	15665	21030	21030					0.03385117889479261
IISRNFPII	9	Unmodified	_IISRNFPII_					0	0	0		nc|ENSG00000092529|P20807-2|CAPN3;nc|ENSG00000092529|P20807-3|CAPN3;ENSG00000092529|ENST00000397163|CAPN3	nc|ENSG00000092529|P20807-2|CAPN3	nc|ENSG00000092529|P20807-2|CAPN3	MULTI-SECPEP	A375_MHC_IP_R1	1	358.6221923828125	3	358.221965	1071.64407	-0.29231	-0.00010471	0.62457	0.00022373	0.33225	0.00011902	358.22217487721315	67.667	1.3205	67.667	67.194	68.514	0					31	25	3	0	0	0	0.76452	1	24505	24505		8.1555	8.1555	1	2884200			21456	2008	15556	15666	21031	21031					0.11110899127993434
IISSEKGFMF	10	Unmodified	_IISSEKGFMF_					0	0	0		tr|U7T5R6|U7T5R6_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00147PE=3SV=1	tr|U7T5R6|U7T5R6_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00147PE=3SV=1	tr|U7T5R6|U7T5R6_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00147PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	386.2885437011719	3	386.86697	1157.57908	-0.18694	-7.2319E-05	3.8989	0.0015084	3.712	0.001436	386.8684650295239	40.052	0.40467	40.827	40.575	40.98	0.77451					11	7	2	0	0	0	0.9269	1	14831	14831		3.5871	0	1	1163000			21457	30028	15557	15667	21032	21032					0.006595365398425201
IISTKVEL	8	Unmodified	_IISTKVEL_					0	0	0			REV__nc|ENSG00000130147|Q9P0V3-2|SH3BP4	REV__nc|ENSG00000130147|Q9P0V3-2|SH3BP4	MULTI-SECPEP	A375_MHC_IP_R1	1	452.1814270019531	2	451.781493	901.548434	-0.18238	-8.2398E-05	-0.077775	-3.5138E-05	-0.26016	-0.00011754	451.7813894743118	73.649	0.60746	73.649	73.336	73.943	0					19	11	2	0	0	0	0.46048	1	26795	26795		54.774	0	1	2697600	+		21458	18518	15558	15668	21033	21033					0.09372126217078858
IISTSGIIALS	11	Unmodified	_IISTSGIIALS_					0	0	0		OR4K2|p.M199I|4|0.28|ENSG00000165762|chr14:19876864-19876864|G/A|missense_variant	OR4K2|p.M199I|4|0.28|ENSG00000165762|chr14:19876864-19876864|G/A|missense_variant	OR4K2|p.M199I|4|0.28|ENSG00000165762|chr14:19876864-19876864|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	538.223388671875	2	537.823889	1073.63323	-0.55444	-0.00029819	0.085546	4.6009E-05	-0.46889	-0.00025218	537.8238680452231	79.129	0.56087	79.129	78.909	79.47	0					23	10	3	0	0	0	0.041071	1	28872	28872		88.954	23.719	1	6703100			21459	15079	15559	15669	21034	21034					0.09935451963042397
IISTSGIIALS	11	Unmodified	_IISTSGIIALS_					0	0	0		OR4K2|p.M199I|4|0.28|ENSG00000165762|chr14:19876864-19876864|G/A|missense_variant	OR4K2|p.M199I|4|0.28|ENSG00000165762|chr14:19876864-19876864|G/A|missense_variant	OR4K2|p.M199I|4|0.28|ENSG00000165762|chr14:19876864-19876864|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	538.2236328125	2	537.823889	1073.63323	-0.84211	-0.00045291	-0.065223	-3.5079E-05	-0.90733	-0.00048799	537.82376025735	78.224	0.45691	78.967	78.676	79.132	0.74294					22	8	3	0	0	0	0.042095	1	29685	29685		81.89	25.713	1	6384700			21460	15079	15559	15669	21035	21035					0.09935451963042397
IITDLLRSV	9	Unmodified	_IITDLLRSV_					0	0	0		ENSG00000162613|ENST00000370768|FUBP1;nc|ENSG00000162613|Q96AE4-2|FUBP1	ENSG00000162613|ENST00000370768|FUBP1	ENSG00000162613|ENST00000370768|FUBP1	MULTI-MSMS	A375_MHC_IP_R1	1	516.2203369140625	2	515.318774	1028.623	-0.49139	-0.00025322	0.18176	9.3663E-05	-0.30964	-0.00015956	515.318956128302	103.34	1.0176	103.34	103.01	104.03	0					41	19	3	0	0	0	0.12748	1	37942	37942		45.74	5.5007	1	6288400			21461	6560	15560	15670	21036	21036					0.1098288902846889
IITDLLRSV	9	Unmodified	_IITDLLRSV_					0	0	0		ENSG00000162613|ENST00000370768|FUBP1;nc|ENSG00000162613|Q96AE4-2|FUBP1	ENSG00000162613|ENST00000370768|FUBP1	ENSG00000162613|ENST00000370768|FUBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	515.7184448242188	2	515.318774	1028.623	-0.7605	-0.0003919	-0.037932	-1.9547E-05	-0.79843	-0.00041145	515.3187909347255	102.4	1.0169	103.17	102.77	103.79	0.76428					41	19	3	0	0	0	0.16237	1	38752	38752		47.732	15.694	1	6006100			21462	6560	15560	15670	21037	21037					0.1098288902846889
IITGFSDDVP	10	Unmodified	_IITGFSDDVP_					0	0	0		SORL1|p.M2201I|1|0.65|ENSG00000137642|chr11:121629521-121629521|G/A|missense_variant	SORL1|p.M2201I|1|0.65|ENSG00000137642|chr11:121629521-121629521|G/A|missense_variant	SORL1|p.M2201I|1|0.65|ENSG00000137642|chr11:121629521-121629521|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	532.1835327148438	2	532.268947	1062.52334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.09	1	74.09	73.59	74.59	0								0	0	0	0.15158	1	26987	26987		14.838	0	1				21463	29220	15561	15671	21038	21038					-0.005419733761300449
IITKDLFQV	9	Unmodified	_IITKDLFQV_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556139.1_1_14:102505853-102505889:+|nuORF	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	A375_MHC_IP_R1	1	539.220947265625	2	538.82115	1075.62775	-0.58649	-0.00031601	-0.39479	-0.00021272	-0.98128	-0.00052873	538.8210833214956	88.327	0.66109	88.327	88.103	88.764	0					21	12	3	0	0	0	0.11849	1	32428	32428		70.332	16.499	1	4924600			21464	9114	15562	15672	21039	21039					0.09295773171243127
IITKLSTPKY	10	Unmodified	_IITKLSTPKY_					0	0	0			REV__ENSG00000035928|ENST00000349703|RFC1	REV__ENSG00000035928|ENST00000349703|RFC1	MULTI-MSMS	A375_MHC_IP_R1	1	388.9642639160156	3	388.572663	1162.69616	0.092579	3.5974E-05	-0.62877	-0.00024432	-0.53619	-0.00020835	388.5723552432558	25.538	0.55863	25.538	25.408	25.966	0					28	10	4	0	0	0	0.66857	1	7468	7468		15.739	2.1238	1	15452000	+		21465	16318	15563	15673	21040	21040					0.12132017751082458
IITKLSTPKY	10	Unmodified	_IITKLSTPKY_					0	0	0			REV__ENSG00000035928|ENST00000349703|RFC1	REV__ENSG00000035928|ENST00000349703|RFC1	MULTI-MSMS	A375_MHC_IP_R2	2	388.9638977050781	3	388.572663	1162.69616	-0.55784	-0.00021676	-0.29721	-0.00011549	-0.85504	-0.00033225	388.57247961481556	24.846	0.55875	25.49	25.314	25.873	0.64368					23	10	3	0	0	0	0.66857	1	8207	8207		15.739	3.5639	1	21739000	+		21466	16318	15563	15673	21041	21041					0.12132017751082458
IITQPWSNWIL	11	Unmodified	_IITQPWSNWIL_					0	0	0			REV__AluJr_dup60568|chr14:19105597-19105868:+|1.3226041514719933|0.494428858352303|1.42|461.0|15|1|anti-sense	REV__AluJr_dup60568|chr14:19105597-19105868:+|1.3226041514719933|0.494428858352303|1.42|461.0|15|1|anti-sense	MULTI-SECPEP	A375_MHC_IP_R2	2	458.1505126953125	3	457.587084	1369.73942	-0.48342	-0.00022121	-0.60787	-0.00027815	-1.0913	-0.00049936	457.58683814929867	37.775	0.51279	38.55	38.33	38.843	0.77451					16	9	2	0	0	0	0.98303	1	13802	13802		10.527	4.6593	1	4911200	+		21467	15366	15564	15674	21042	21042					0.0693420752838847
IIVALREV	8	Unmodified	_IIVALREV_					0	0	0			REV__tr|U7T5W3|U7T5W3_FUSNUOxaloacetatedecarboxylase(Na(+)extruding)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00409PE=4SV=1	REV__tr|U7T5W3|U7T5W3_FUSNUOxaloacetatedecarboxylase(Na(+)extruding)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00409PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	457.1970520019531	2	456.797478	911.580402	-0.36458	-0.00016654	-0.26889	-0.00012283	-0.63348	-0.00028937	456.7973321915714	80.945	0.61397	81.69	81.416	82.03	0.74474					23	11	3	0	0	0	0.51146	1	30749	30749		52.268	0	1	2741200	+		21468	28840	15565	15675	21043	21043					0.1210753869089558
IIVHFADKV	9	Unmodified	_IIVHFADKV_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;MYO5B|p.A547T|1|0.61|ENSG00000167306|chr18:49954342-49954342|C/T|missense_variant	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	A375_MHC_IP_R1	1	520.7045288085938	2	521.30821	1040.60187	-0.72321	-0.00037701	0.96181	0.0005014	0.23861	0.00012439	521.3084534541518	130.29	0.15283	130.29	130.21	130.36	0					4	2	2	0	0	0	0.69504	1	50156	50156		7.9102	0	1	2014400			21469	7176	15566	15676	21044	21044					0.0831892371959384
IIVIIVRKY	9	Unmodified	_IIVIIVRKY_					0	0	0			REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.4180499830709992|0.4902543273978149|1.53|471.0|54|3|sense	REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.4180499830709992|0.4902543273978149|1.53|471.0|54|3|sense	MSMS	A375_MHC_IP_R1	1	558.9683837890625	2	558.878802	1115.74305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.287	1	82.287	81.787	82.787	0								0	0	0	0.15486	1	30090	30090		5.2307	2.3415	1		+		21470	26883	15567	15677	21045	21045					0.18980922092896435
IIVSGLIGA	9	Unmodified	_IIVSGLIGA_					0	0	0			REV__tr|U7STF7|U7STF7_FUSNUDUF1576domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01332PE=4SV=1	REV__tr|U7STF7|U7STF7_FUSNUDUF1576domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01332PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	422.17047119140625	2	421.770929	841.527304	-0.21452	-9.0478E-05	-0.023955	-1.0103E-05	-0.23847	-0.00010058	421.77081850010194	70.915	0.75922	71.65	71.251	72.01	0.73421					24	14	2	0	0	0	0.010002	1	26883	26883		123.1	11.809	1	7927600	+		21471	28483	15568	15678	21046	21046					0.10020160908231901
IIYDEDFPLSL	11	Unmodified	_IIYDEDFPLSL_					0	0	0			REV__nc|ENSG00000144619|Q8IWV2-2|CNTN4	REV__nc|ENSG00000144619|Q8IWV2-2|CNTN4	MSMS	A375_MHC_IP_R1	1	663.1324462890625	2	662.837194	1323.65983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.793	1	91.793	91.293	92.293	0								0	0	0	0.16179	1	33729	33729		9.3831	0.63772	1		+		21472	19434	15569	15679	21047	21047					0.010950960637273965
IIYMQFHQ	8	Unmodified	_IIYMQFHQ_					0	0	0		nc|ENSG00000166451|Q96H22-2|CENPN;nc|ENSG00000166451|Q96H22-5|CENPN;ENSG00000166451|ENST00000305850|CENPN;nc|ENSG00000166451|Q96H22-3|CENPN	nc|ENSG00000166451|Q96H22-2|CENPN	nc|ENSG00000166451|Q96H22-2|CENPN	MULTI-SECPEP	A375_MHC_IP_R2	2	1079.3912353515625	1	1079.53426	1078.52699	0.1165	0.00012576	0.41887	0.00045219	0.53537	0.00057795	1080.537617456078	120.29	0.7621	120.82	120.24	121	0.5321					18	14	2	0	0	0	0.972	1	45897	45897		5.7604	0	1	30973000			21473	7074	15570	15680	21048	21048					-0.009135820832852914
IIYQPLLPVL	10	Unmodified	_IIYQPLLPVL_					0	0	0			REV__ENST00000598044.1_1_19:50861812-50862477:-|nuORF	REV__ENST00000598044.1_1_19:50861812-50862477:-|nuORF	MSMS	A375_MHC_IP_R2	2	390.2885437011719	3	390.249521	1167.72673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.831	1	73.566	73.066	74.066	0.73541								0	0	0	0.15522	1	27644	27644		3.8763	1.033	1		+		21474	26485	15571	15681	21049	21049					0.149577961361274
IKAKIDKKY	9	Unmodified	_IKAKIDKKY_					0	0	0			REV__tr|U7T012|U7T012_FUSNUPeptidaseS8/S53domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00769PE=3SV=1	REV__tr|U7T012|U7T012_FUSNUPeptidaseS8/S53domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00769PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	370.28875732421875	3	369.569253	1105.68593	-0.017845	-6.595E-06	0.017965	6.6395E-06	0.00012036	4.4483E-08	369.56918041362235	19.943	0.60626	20.553	20.095	20.701	0.61029					26	11	3	0	0	0	0.73491	1	6187	6187		3.8763	0	1	1589000	+		21475	28663	15572	15682	21050	21050					0.13731454816525002
IKARVIVIR	9	Unmodified	_IKARVIVIR_					0	0	0		nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;ENSG00000174373|ENST00000680220|RALGAPA1;ENST00000554704.5_1_14:36176787-36221314:-|nuORF;ENST00000443361.1_1_9:108283251-108284913:+|nuORF;ENST00000554652.5_1_14:36147090-36221314:-|nuORF;nc|ENSG00000174373|Q6GYQ0-3|RALGAPA1	nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1	nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1	MULTI-SECPEP	A375_MHC_IP_R1	1	356.9853210449219	3	356.585238	1066.73388	0.24223	8.6377E-05	-0.064197	-2.2892E-05	0.17804	6.3485E-05	356.5851056522299	42.878	0.60978	42.878	42.587	43.197	0					17	11	2	0	0	0	0.80713	1	14912	14912		2.086	0	1	1644500			21476	7873	15573	15683	21051	21051					0.2031857352719726
IKASFRTKVP	10	Unmodified	_IKASFRTKVP_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;USH2A|p.V2904Tfs*33|1|0.04|ENSG00000042781|chr1:215867142-215867143|CG/-|frameshift_variant	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MULTI-MSMS	A375_MHC_IP_R2	2	383.3047180175781	3	382.904636	1145.69208	0.077311	2.9603E-05	0.13221	5.0625E-05	0.20952	8.0228E-05	382.9046095251969	47.263	0.40776	48.024	47.817	48.225	0.76127					22	7	4	0	0	0	0.54537	1	17730	17730		24.957	1.156	1	6473300			21477	1177	15574	15684	21052	21052					0.12505973048041596
IKASFRTKVP	10	Unmodified	_IKASFRTKVP_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;USH2A|p.V2904Tfs*33|1|0.04|ENSG00000042781|chr1:215867142-215867143|CG/-|frameshift_variant	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	382.904636	1145.69208	0.69784	0.00026721	-0.31545	-0.00012079	0.38239	0.00014642	382.90442714356203	48.405	0.60774	48.405	48.223	48.831	0	0.19018	-0.00029444	NaN	24.957	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6785900			21478	1177	15574	15684							0.12505973048041596
IKASFRTKVP	10	Unmodified	_IKASFRTKVP_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;USH2A|p.V2904Tfs*33|1|0.04|ENSG00000042781|chr1:215867142-215867143|CG/-|frameshift_variant	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	382.904636	1145.69208	0.077311	2.9603E-05	0.13221	5.0625E-05	0.20952	8.0228E-05	382.9046095251969	47.263	0.40776	48.024	47.817	48.225	0.76127	-0.19018	0.0002198	NaN	24.957	22	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6473300			21479	1177	15574	15684							0.12505973048041596
IKCPTFRRE	9	Unmodified	_IKCPTFRRE_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-SECPEP	A375_MHC_IP_R2	2	384.62127685546875	3	383.878092	1148.61245	-0.22566	-8.6628E-05	-1.0505	-0.00040324	-1.2761	-0.00048987	383.8772134468022	50.709	0.91091	51.463	50.955	51.866	0.75406					33	17	3	0	0	0	0.74412	1	19075	19075		3.8763	0	1	1858800			21480	9124	15575	15685	21053	21053					0.04408583102372177
IKDDKEKVPI	10	Unmodified	_IKDDKEKVPI_					0	0	0			REV__ENSG00000139865|ENST00000553443|TTC6	REV__ENSG00000139865|ENST00000553443|TTC6	MULTI-SECPEP	A375_MHC_IP_R2	2	396.2763977050781	3	395.567689	1183.68124	-0.1877	-7.4247E-05	-0.38264	-0.00015136	-0.57034	-0.00022561	395.5676252873747	32.605	0.20271	33.342	33.265	33.468	0.73692					5	3	2	0	0	0	0.93711	1	11672	11672		9.2438	0.49199	1	827320	+		21481	19183	15576	15686	21054	21054					0.09674525883087881
IKDLLSMKI	9	Unmodified	_IKDLLSMKI_					0	0	0			REV__tr|U7T2F2|U7T2F2_FUSNUSeptumsite-determiningproteinMinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00429PE=3SV=1	REV__tr|U7T2F2|U7T2F2_FUSNUSeptumsite-determiningproteinMinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00429PE=3SV=1	MSMS	A375_MHC_IP_R2	2	354.27899169921875	3	354.219344	1059.6362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.4	1	25.043	24.543	25.543	0.64368								0	0	0	0.15486	1	8007	8007		6.6304	0.43853	1		+		21482	28737	15577	15687	21055	21055					0.10877003816199249
IKDNHVEY	8	Unmodified	_IKDNHVEY_					0	0	0		nc|ENSG00000167080|Q8NHY0-3|B4GALNT2;ENSG00000167080|ENST00000393354|B4GALNT2;nc|ENSG00000167080|Q8NHY0|B4GALNT2	nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	MSMS	A375_MHC_IP_R1	1	509.2023620605469	2	509.253631	1016.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.094	1	31.094	30.594	31.594	0								0	0	0	0.16876	1	9936	9936		19.439	2.4967	1				21483	7151	15578	15688	21056	21056					-0.014877069705221402
IKEDAREIVK	10	Unmodified	_IKEDAREIVK_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	A375_MHC_IP_R2	2	401.30316162109375	3	400.903072	1199.68739	-0.025605	-1.0265E-05	-0.15535	-6.2281E-05	-0.18096	-7.2546E-05	400.90307737795064	27.25	0.46016	27.928	27.587	28.047	0.67857					20	8	3	0	0	0	0.64407	1	9327	9327		17.572	0.52333	1	3404500	+		21484	21820	15579	15689	21057	21057					0.09553044114591103
IKEDDLESF	9	Unmodified	_IKEDDLESF_					0	0	0			REV__FMNL3|p.F788Lfs*19|1|0.06|ENSG00000161791|chr12:49649280-49649281|-/TTCTGCTTTT|frameshift_variant	REV__FMNL3|p.F788Lfs*19|1|0.06|ENSG00000161791|chr12:49649280-49649281|-/TTCTGCTTTT|frameshift_variant	MSMS	A375_MHC_IP_R1	1	548.1793823242188	2	548.263862	1094.51317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.57	1	108.57	108.07	109.07	0								0	0	0	0.1521	1	39828	39828		18.146	1.9972	1		+		21485	20218	15580	15690	21058	21058					-0.030305811013704442
IKEDSFLQRY	10	Unmodified	_IKEDSFLQRY_					0	0	0		ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	MULTI-MSMS	A375_MHC_IP_R1	1	433.62799072265625	3	433.562827	1297.66665	-0.10986	-4.7631E-05	-0.2301	-9.9764E-05	-0.33996	-0.0001474	433.5627800411455	62.117	0.9715	62.117	61.585	62.557	0					25	18	2	0	0	0	0.71619	1	22342	22342		5.0475	1.9753	1	2075900			21486	5630	15581	15691	21059	21059					0.02972453734969349
IKEEWKRRLRY	11	Unmodified	_IKEEWKRRLRY_					0	0	0			REV__ENSG00000100368|ENST00000403662|CSF2RB	REV__ENSG00000100368|ENST00000403662|CSF2RB	MULTI-SECPEP	A375_MHC_IP_R1	1	525.68798828125	3	526.307203	1575.89978	-0.54348	-0.00028604	-0.1286	-6.7685E-05	-0.67209	-0.00035372	526.3071638040727	80.046	0.30846	80.046	79.828	80.136	0					6	5	2	0	0	0	1.0014	1	29213	29213		0.50596	0	1	1374000	+		21487	17084	15582	15692	21060	21060					0.1348655524525384
IKEGYRREKYN	11	Unmodified	_IKEGYRREKYN_					0	0	0		tr|U7SPE9|U7SPE9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01843PE=4SV=1	tr|U7SPE9|U7SPE9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01843PE=4SV=1	tr|U7SPE9|U7SPE9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01843PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	486.327880859375	3	485.92828	1454.76301	-0.12508	-6.0778E-05	-0.3194	-0.00015521	-0.44448	-0.00021598	485.928148525467	42.461	0.50551	42.461	42.132	42.638	0					23	9	3	0	0	0	0.99994	1	14701	14701		3.5927	3.5927	1	12195000			21488	29581	15583	15693	21061	21061					0.053820212949176494
IKEGYRREKYN	11	Unmodified	_IKEGYRREKYN_					0	0	0		tr|U7SPE9|U7SPE9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01843PE=4SV=1	tr|U7SPE9|U7SPE9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01843PE=4SV=1	tr|U7SPE9|U7SPE9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01843PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	486.327880859375	3	485.92828	1454.76301	-0.67467	-0.00032784	-0.019155	-9.3079E-06	-0.69383	-0.00033715	485.928273828712	41.655	0.56011	42.429	42.098	42.659	0.77451					27	10	4	0	0	0	0.72713	1	15442	15442		11.631	5.0079	1	8196500			21489	29581	15583	15693	21062	21062					0.053820212949176494
IKEHQQYLGL	10	Unmodified	_IKEHQQYLGL_					0	0	0		ENST00000551207.2_1_14:36289043-36289391:+|nuORF	ENST00000551207.2_1_14:36289043-36289391:+|nuORF	ENST00000551207.2_1_14:36289043-36289391:+|nuORF	MSMS	A375_MHC_IP_R1	1	410.2752380371094	3	410.227667	1227.66117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.111	1	33.111	32.611	33.611	0								0	0	0	0.14953	1	10772	10772		18.721	7.2033	1				21490	13380	15584	15694	21063	21063					0.0564477494312996
IKEKQQRWLFY	11	Unmodified	_IKEKQQRWLFY_					0	0	0			REV__ENST00000480110.5_1_6:26445933-26448699:+|nuORF	REV__ENST00000480110.5_1_6:26445933-26448699:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	514.1715698242188	3	513.620788	1537.84053	-1.1612	-0.00059642	3.5864	0.001842	2.4252	0.0012456	513.6226630946796	59.221	0.35564	59.968	59.691	60.047	0.74714					10	6	2	0	0	0	0.99732	1	22434	22434		6.6235	2.2173	1	611000	+		21491	17696	15585	15695	21064	21064					0.09312659231090947
IKELEERKESL	11	Unmodified	_IKELEERKESL_					0	0	0			REV__KCNF1|p.E140K|1|0.38|ENSG00000162975|chr2:10912844-10912844|G/A|missense_variant	REV__KCNF1|p.E140K|1|0.38|ENSG00000162975|chr2:10912844-10912844|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	458.99261474609375	3	458.592675	1372.75619	-0.24898	-0.00011418	0.16474	7.5546E-05	-0.084245	-3.8634E-05	458.5927576023119	57.745	0.96356	57.745	57.467	58.43	0					69	18	6	0	0	0	0.38403	1	20689	20689		27.129	3.1647	1	99760000	+		21492	26822	15586	15696	21065	21065					0.08472663623660992
IKELEERKESL	11	Unmodified	_IKELEERKESL_					0	0	0			REV__KCNF1|p.E140K|1|0.38|ENSG00000162975|chr2:10912844-10912844|G/A|missense_variant	REV__KCNF1|p.E140K|1|0.38|ENSG00000162975|chr2:10912844-10912844|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	687.7843627929688	2	687.385374	1372.75619	-0.62952	-0.00043273	0.10573	7.2676E-05	-0.5238	-0.00036005	687.3854574160124	57.746	0.76098	57.746	57.467	58.228	0					38	14	4	0	0	0	0.46059	1	20694	20694		34.222	6.9985	1	31078000	+		21493	26822	15586	15696	21066	21066					0.08472663623660992
IKELEERKESL	11	Unmodified	_IKELEERKESL_					0	0	0			REV__KCNF1|p.E140K|1|0.38|ENSG00000162975|chr2:10912844-10912844|G/A|missense_variant	REV__KCNF1|p.E140K|1|0.38|ENSG00000162975|chr2:10912844-10912844|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	687.732177734375	2	687.385374	1372.75619	-0.62952	-0.00043273	0.10573	7.2676E-05	-0.5238	-0.00036005	687.3854574160124	57.746	0.76098	57.746	57.467	58.228	0					38	14	4	0	0	0	0.56859	1	20755	20755		34.222	12.632	1	31078000	+		21494	26822	15586	15696	21067	21067					0.08472663623660992
IKELEERKESL	11	Unmodified	_IKELEERKESL_					0	0	0			REV__KCNF1|p.E140K|1|0.38|ENSG00000162975|chr2:10912844-10912844|G/A|missense_variant	REV__KCNF1|p.E140K|1|0.38|ENSG00000162975|chr2:10912844-10912844|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	458.9924011230469	3	458.592675	1372.75619	-0.79086	-0.00036268	0.028019	1.2849E-05	-0.76284	-0.00034983	458.59270311871273	56.818	1.1222	57.568	57.306	58.428	0.75015					64	21	5	0	0	0	0.38403	1	21448	21448		27.129	11.59	1	94527000	+		21495	26822	15586	15696	21068	21068					0.08472663623660992
IKELEERKESL	11	Unmodified	_IKELEERKESL_					0	0	0			REV__KCNF1|p.E140K|1|0.38|ENSG00000162975|chr2:10912844-10912844|G/A|missense_variant	REV__KCNF1|p.E140K|1|0.38|ENSG00000162975|chr2:10912844-10912844|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	687.78466796875	2	687.385374	1372.75619	-1.109	-0.00076234	-0.025687	-1.7657E-05	-1.1347	-0.00078	687.3853526887569	56.801	0.66374	57.551	57.356	58.02	0.75015					36	12	5	0	0	0	0.13939	1	21463	21463		63.227	7.7248	1	25108000	+		21496	26822	15586	15696	21069	21069					0.08472663623660992
IKELEERKESL	11	Unmodified	_IKELEERKESL_					0	0	0			REV__KCNF1|p.E140K|1|0.38|ENSG00000162975|chr2:10912844-10912844|G/A|missense_variant	REV__KCNF1|p.E140K|1|0.38|ENSG00000162975|chr2:10912844-10912844|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	687.385374	1372.75619	-1.109	-0.00076234	-0.025687	-1.7657E-05	-1.1347	-0.00078	687.3853526887569	56.801	0.66374	57.551	57.356	58.02	0.75015	-0.097226	-9.8887E-05	NaN	63.227	36	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25108000	+		21497	26822	15586	15696							0.08472663623660992
IKEMEMCSFPL	11	Unmodified	_IKEMEMCSFPL_					0	0	0		ENST00000398019.6_2_18:61442942-61449706:+|nuORF	ENST00000398019.6_2_18:61442942-61449706:+|nuORF	ENST00000398019.6_2_18:61442942-61449706:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	443.1997375488281	3	443.20801	1326.6022	-0.28849	-0.00012786	-2.4833	-0.0011006	-2.7718	-0.0012285	443.5413964185844	32.889	0.30476	32.889	32.684	32.989	0					6	5	2	0	0	0	0.99847	1	10686	10686		0.45452	0	1	1177500			21498	11514	15587	15697	21070	21070					-0.048035287293714646
IKEMLIELE	9	Unmodified	_IKEMLIELE_					0	0	0			REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	559.712158203125	2	559.3123	1116.61005	-0.58207	-0.00032556	1.1776	0.00065863	0.59549	0.00033306	559.3128502777798	118.21	0.75648	118.82	118.54	119.3	0.60909					29	14	3	0	0	0	0.027818	1	44824	44824		76.825	3.8568	1	43767000	+		21499	28544	15588	15698	21071	21071					0.05640689854044467
IKENMKFKEII	11	Unmodified	_IKENMKFKEII_					0	0	0			REV__tr|U7T547|U7T547_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00435PE=4SV=1	REV__tr|U7T547|U7T547_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00435PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	465.3354187011719	3	464.935496	1391.78466	-0.46144	-0.00021454	0.18867	8.772E-05	-0.27277	-0.00012682	464.9354385605228	131.5	1.1132	131.5	130.87	131.98	0					41	21	3	0	0	0	0.73672	1	50622	50622		1.0136	0.55906	1	8445200	+		21500	28819	15589	15699	21072	21072					0.10443689999260641
IKENMKFKEII	11	Unmodified	_IKENMKFKEII_					0	0	0			REV__tr|U7T547|U7T547_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00435PE=4SV=1	REV__tr|U7T547|U7T547_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00435PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	464.9813232421875	3	464.935496	1391.78466	-0.4759	-0.00022126	0.3441	0.00015998	-0.1318	-6.1277E-05	464.93552695202214	132.35	1.9309	132.35	131.83	133.76	0					78	37	4	0	0	0	0.73672	1	51030	51030		1.0136	0.55906	1	19793000	+		21501	28819	15589	15699	21073	21073					0.10443689999260641
IKENMKFKEII	11	Unmodified	_IKENMKFKEII_					0	0	0			REV__tr|U7T547|U7T547_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00435PE=4SV=1	REV__tr|U7T547|U7T547_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00435PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	465.6697692871094	3	464.935496	1391.78466	-0.61569	-0.00028626	0.68468	0.00031833	0.068986	3.2074E-05	464.935589948293	131.34	1.0682	131.53	130.93	132	0.18954					55	20	4	0	0	0	0.7342	1	51772	51772		2.2527	1.0379	1	7614100	+		21502	28819	15589	15699	21074	21074					0.10443689999260641
IKENMKFKEII	11	Unmodified	_IKENMKFKEII_					0	0	0			REV__tr|U7T547|U7T547_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00435PE=4SV=1	REV__tr|U7T547|U7T547_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00435PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	465.3352355957031	3	464.935496	1391.78466	-0.58606	-0.00027248	0.24853	0.00011555	-0.33753	-0.00015693	464.93550188453344	132.32	1.3726	132.51	132	133.37	0.18953					75	26	4	0	0	0	0.73672	1	51852	51852		1.0136	0.55906	1	15039000	+		21503	28819	15589	15699	21075	21075					0.10443689999260641
IKEQLRKIH	9	Unmodified	_IKEQLRKIH_					0	0	0			REV__nc|ENSG00000133739|Q9C099-2|LRRCC1	REV__nc|ENSG00000133739|Q9C099-2|LRRCC1	MULTI-SECPEP	A375_MHC_IP_R2	2	388.6266784667969	3	388.911902	1163.71388	0.011926	4.6383E-06	2.9245	0.0011374	2.9365	0.001142	389.24841418569065	43.535	0.30328	44.307	44.13	44.433	0.7724					7	5	2	0	0	0	0.80535	1	16257	16257		0.86438	0.75644	1	580580	+		21504	18731	15590	15700	21076	21076					0.13856777796604547
IKETKTVSRS	10	Unmodified	_IKETKTVSRS_					0	0	0		ENSG00000121446|ENST00000294854|RGSL1;nc|ENSG00000121446|A5PLK6-4|RGSL1;nc|ENSG00000121446|A5PLK6-5|RGSL1;nc|ENSG00000121446|A5PLK6-3|RGSL1;nc|ENSG00000121446|A5PLK6-2|RGSL1	ENSG00000121446|ENST00000294854|RGSL1	ENSG00000121446|ENST00000294854|RGSL1	MULTI-SECPEP	A375_MHC_IP_R1	1	575.2353515625	2	574.83532	1147.65609	-0.31661	-0.000182	-0.42469	-0.00024413	-0.74131	-0.00042613	574.8350287873238	129.12	1.1697	129.12	128.84	130.01	0					35	22	2	0	0	0	0.94102	1	49978	49978		5.7319	5.7319	1	27312000			21505	3721	15591	15701	21077	21077					0.08816471080513111
IKFRSEFQP	9	Unmodified	_IKFRSEFQP_					0	0	0			REV__ENST00000397786.6_1_17:60021561-60021606:-|nuORF	REV__ENST00000397786.6_1_17:60021561-60021606:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	384.9819641113281	3	384.545108	1150.61349	-0.15331	-5.8954E-05	-0.16588	-6.3787E-05	-0.31918	-0.00012274	384.5450218838059	39.673	0.55894	40.447	40.269	40.828	0.77451					14	10	2	0	0	0	0.77948	1	14691	14691		6.6304	0	1	3332500	+		21506	24363	15592	15702	21078	21078					0.04421120742927087
IKFVLIPMF	9	Unmodified	_IKFVLIPMF_					0	0	0		ENSG00000160191|ENST00000291539|PDE9A;nc|ENSG00000160191|O76083-16|PDE9A;nc|ENSG00000160191|O76083-15|PDE9A;nc|ENSG00000160191|O76083-14|PDE9A;nc|ENSG00000160191|O76083-2|PDE9A;nc|ENSG00000160191|O76083-13|PDE9A;nc|ENSG00000160191|O76083-8|PDE9A;nc|ENSG00000160191|O76083-6|PDE9A;ENST00000470987.5_1_21:44117526-44195400:+|nuORF;nc|ENSG00000160191|O76083-3|PDE9A;nc|ENSG00000160191|O76083-4|PDE9A;nc|ENSG00000160191|O76083-11|PDE9A;nc|ENSG00000160191|O76083-9|PDE9A;nc|ENSG00000160191|O76083-12|PDE9A;nc|ENSG00000160191|O76083-5|PDE9A;ENST00000489319.5_1_21:44178904-44195400:+|nuORF;nc|ENSG00000160191|O76083-7|PDE9A;nc|ENSG00000160191|O76083-10|PDE9A;PDE9A|p.G515E|1|0.37|ENSG00000160191|chr21:42769109-42769109|G/A|missense_variant	ENSG00000160191|ENST00000291539|PDE9A	ENSG00000160191|ENST00000291539|PDE9A	MULTI-SECPEP	A375_MHC_IP_R1	1	369.5960998535156	3	369.89268	1106.65621	0.079418	2.9376E-05	-0.13812	-5.1088E-05	-0.058698	-2.1712E-05	369.89266485697607	27.938	0.35302	27.938	27.735	28.088	0					10	6	2	0	0	0	0.76187	1	8533	8533		4.5289	4.0743	1	1441200			21507	6402	15593	15703	21079	21079					0.10714799546826725
IKGDLLNQV	9	Unmodified	_IKGDLLNQV_					0	0	0			REV__ENSG00000130699|ENST00000252996|TAF4	REV__ENSG00000130699|ENST00000252996|TAF4	MSMS	A375_MHC_IP_R1	1	500.41046142578125	2	500.295299	998.576045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.169	1	78.169	77.669	78.669	0								0	0	0	0.14905	1	28533	28533		23.148	1.4018	1		+		21508	18554	15594	15704	21080	21080					0.07670029477333173
IKGFHEILIE	10	Unmodified	_IKGFHEILIE_					0	0	0			REV__ENSG00000079482|ENST00000355520|OPHN1	REV__ENSG00000079482|ENST00000355520|OPHN1	MSMS	A375_MHC_IP_R1	1	400.2852783203125	3	400.23253	1197.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.533	1	70.533	70.033	71.033	0								0	0	0	0.14628	1	25612	25612		24.882	7.4389	1		+		21509	16735	15595	15705	21081	21081					0.0848284709127256
IKGFHEILIE	10	Unmodified	_IKGFHEILIE_					0	0	0			REV__ENSG00000079482|ENST00000355520|OPHN1	REV__ENSG00000079482|ENST00000355520|OPHN1	MSMS	A375_MHC_IP_R2	2	400.2849426269531	3	400.23253	1197.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.571	1	70.306	69.806	70.806	0.73421								0	0	0	0.14628	1	26364	26364		24.882	7.4389	1		+		21510	16735	15595	15705	21082	21082					0.0848284709127256
IKGKVIPP	8	Unmodified	_IKGKVIPP_					0	0	0		ENSG00000137642|ENST00000260197|SORL1;SORL1|p.P1751L|1|0.28|ENSG00000137642|chr11:121611088-121611088|C/T|missense_variant	ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	MSMS	A375_MHC_IP_R2	2	426.6893005371094	2	426.289288	850.564024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.514	1	47.279	46.779	47.779	0.76519								0	0	0	0.16876	1	17422	17422		8.5933	3.3626	1				21511	4901	15596	15706	21083	21083					0.13276457524807483
IKGYPQCLKI	10	Unmodified	_IKGYPQCLKI_					0	0	0			REV__nc|ENSG00000144642|Q6XE24-3|RBMS3	REV__nc|ENSG00000144642|Q6XE24-3|RBMS3	MULTI-MSMS	A375_MHC_IP_R2	2	388.60467529296875	3	388.22661	1161.658	-0.30335	-0.00011777	0.86961	0.00033761	0.56626	0.00021984	388.22665789922223	33.114	0.76266	33.866	33.332	34.095	0.75225					34	14	3	0	0	0	0.36703	1	11862	11862		24.882	0	1	9306200	+		21512	19435	15597	15707	21084	21084					0.08363808564763531
IKGYPQCLKI	10	Unmodified	_IKGYPQCLKI_					0	0	0			REV__nc|ENSG00000144642|Q6XE24-3|RBMS3	REV__nc|ENSG00000144642|Q6XE24-3|RBMS3	MULTI-MSMS	A375_MHC_IP_R2	2	388.6262512207031	3	388.22661	1161.658	-0.52955	-0.00020559	1.1388	0.00044212	0.60927	0.00023653	388.2269297266364	34.019	1.6213	34.771	34.5	36.121	0.75225					45	31	3	0	0	0	0.21466	1	12343	12343		40.725	1.5119	1	6518700	+		21513	19435	15597	15707	21085	21085					0.08363808564763531
IKGYPQCLKI	10	Unmodified	_IKGYPQCLKI_					0	0	0			REV__nc|ENSG00000144642|Q6XE24-3|RBMS3	REV__nc|ENSG00000144642|Q6XE24-3|RBMS3	MULTI-SECPEP	A375_MHC_IP_R2	2	388.9488830566406	3	388.22661	1161.658	-0.52955	-0.00020559	1.1388	0.00044212	0.60927	0.00023653	388.2269297266364	34.019	1.6213	34.771	34.5	36.121	0.75225					45	31	3	0	0	0	0.83355	1	12392	12392		10.899	3.29	1	6518700	+		21514	19435	15597	15707	21086	21086					0.08363808564763531
IKHQNRQLR	9	Unmodified	_IKHQNRQLR_					0	0	0		nc|ENSG00000188807|Q5SNT2-2|TMEM201;ENSG00000188807|ENST00000340381|TMEM201	nc|ENSG00000188807|Q5SNT2-2|TMEM201	nc|ENSG00000188807|Q5SNT2-2|TMEM201	MULTI-MSMS	A375_MHC_IP_R2	2	398.2817687988281	3	398.2389	1191.69487	-0.39401	-0.00015691	0.35795	0.00014255	-0.036059	-1.436E-05	398.23903674196123	61.271	0.7057	62.016	61.566	62.272	0.74503					29	13	3	0	0	0	0.70886	1	23099	23099		6.6304	3.7871	1	4883600			21515	8938	15598	15708	21087	21087					0.10669241225537007
IKIFYYSYENY	11	Unmodified	_IKIFYYSYENY_					0	0	0		tr|U7SJI5|U7SJI5_FUSNUDNAprotectingproteinDprAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02057PE=3SV=1	tr|U7SJI5|U7SJI5_FUSNUDNAprotectingproteinDprAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02057PE=3SV=1	tr|U7SJI5|U7SJI5_FUSNUDNAprotectingproteinDprAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02057PE=3SV=1	MSMS	A375_MHC_IP_R1	1	501.6392517089844	3	501.578254	1501.71293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.555	1	27.555	27.055	28.055	0								0	0	0	0.16269	1	8376	8376		4.7159	2.2811	1				21516	29454	15599	15709	21088	21088					-0.01785526153594219
IKIIKKILNVP	11	Unmodified	_IKIIKKILNVP_					0	0	0		tr|U7T3D2|U7T3D2_FUSNUIon-translocatingoxidoreductasecomplexsubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfCPE=3SV=1	tr|U7T3D2|U7T3D2_FUSNUIon-translocatingoxidoreductasecomplexsubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfCPE=3SV=1	tr|U7T3D2|U7T3D2_FUSNUIon-translocatingoxidoreductasecomplexsubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfCPE=3SV=1	MSMS	A375_MHC_IP_R2	2	639.76220703125	2	639.947216	1277.87988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.85	1	126.15	125.65	126.65	0.2951								0	0	0	0.16353	1	49167	49167		0.35063	0.043601	1				21517	29966	15600	15710	21089	21089					0.2520541125259115
IKIPKPSP	8	Unmodified	_IKIPKPSP_					0	0	0			REV__nc|ENSG00000090686|Q86UV5-4|USP48	REV__nc|ENSG00000090686|Q86UV5-4|USP48	MULTI-MSMS	A375_MHC_IP_R1	1	440.6869201660156	2	440.286746	878.558939	-0.43037	-0.00018949	0.43907	0.00019332	0.0086985	3.8299E-06	440.2868950399602	68.308	0.6093	68.308	68.006	68.616	0					26	11	3	0	0	0	0.62444	1	24738	24738		43.858	1.7637	1	3924800	+		21518	27135	15601	15711	21090	21090					0.11480153662182602
IKIPKPSP	8	Unmodified	_IKIPKPSP_					0	0	0			REV__nc|ENSG00000090686|Q86UV5-4|USP48	REV__nc|ENSG00000090686|Q86UV5-4|USP48	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	440.286746	878.558939	-0.43037	-0.00018949	0.43907	0.00019332	0.0086985	3.8299E-06	440.2868950399602	68.308	0.6093	68.308	68.006	68.616	0	0.16752	0.0002439	NaN	43.858	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3924800	+		21519	27135	15601	15711							0.11480153662182602
IKKFETEKLIR	11	Unmodified	_IKKFETEKLIR_					0	0	0			REV__ENSG00000146648|ENST00000275493|EGFR	REV__ENSG00000146648|ENST00000275493|EGFR	MULTI-MSMS	A375_MHC_IP_R1	1	469.668212890625	3	468.957288	1403.85004	-0.40803	-0.00019135	-0.30736	-0.00014414	-0.7154	-0.00033549	468.95711230358916	24.673	0.40528	24.673	24.547	24.953	0					17	7	3	0	0	0	0.73807	1	7089	7089		1.2148	1.2148	1	7001500	+		21520	19545	15602	15712	21091	21091					0.16426427516603326
IKKIEEQRGKK	11	Unmodified	_IKKIEEQRGKK_					0	0	0		tr|U7T585|U7T585_FUSNUElectrontransferflavoproteinbetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00164PE=4SV=1	tr|U7T585|U7T585_FUSNUElectrontransferflavoproteinbetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00164PE=4SV=1	tr|U7T585|U7T585_FUSNUElectrontransferflavoproteinbetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00164PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	453.34832763671875	3	452.948904	1355.82488	-0.50999	-0.000231	-0.6302	-0.00028545	-1.1402	-0.00051645	452.94851653239954	137.1	1.3854	137.1	136.87	138.25	0					54	26	4	0	0	0	0.73881	1	52788	52788		0.50596	0.50596	1	16453000			21521	30015	15603	15713	21092	21092					0.16120372713999132
IKKIKSCLF	9	Unmodified	_IKKIKSCLF_					0	0	0			REV__nc|ENSG00000180481|Q4G1C9-2|GLIPR1L2	REV__nc|ENSG00000180481|Q4G1C9-2|GLIPR1L2	MULTI-MSMS	A375_MHC_IP_R2	2	360.6091613769531	3	360.559701	1078.65727	-0.25223	-9.0943E-05	-0.010346	-3.7302E-06	-0.26257	-9.4674E-05	360.55965452748364	40.177	0.40571	40.951	40.777	41.183	0.77451					19	7	3	0	0	0	0.72507	1	14941	14941		2.7352	0	1	6221200	+		21522	27387	15604	15714	21093	21093					0.12109013915687683
IKKKKKIKI	9	Unmodified	_IKKKKKIKI_					0	0	0			REV__tr|U7SV77|U7SV77_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01546PE=4SV=1	REV__tr|U7SV77|U7SV77_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01546PE=4SV=1	MSMS	A375_MHC_IP_R2	2	563.9298095703125	2	563.923544	1125.83253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.28	1	98.036	97.536	98.536	0.75586								0	0	0	0.15486	1	36924	36924		0	0	1		+		21523	28587	15605	15715	21094	21094					0.2746517677223892
IKKKKKKKKGI	11	Unmodified	_IKKKKKKKKGI_					0	0	0			REV__ENST00000433510.2_1_17:46713761-46713989:-|nuORF	REV__ENST00000433510.2_1_17:46713761-46713989:-|nuORF	MSMS	A375_MHC_IP_R2	2	663.9862670898438	2	663.987207	1325.95986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.10799	1	0.57843	0.078432	1.0784	0.47044								0	0	0	0.1636	1	39	39		0	0	1		+		21524	24733	15606	15716	21095	21095					0.30991897646413236
IKKKNRKNFL	10	Unmodified	_IKKKNRKNFL_					0	0	0			REV__tr|U7SLA8|U7SLA8_FUSNUUDP-N-acetyl-D-galactosaminedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01952PE=3SV=1	REV__tr|U7SLA8|U7SLA8_FUSNUUDP-N-acetyl-D-galactosaminedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01952PE=3SV=1	MSMS	A375_MHC_IP_R2	2	430.3095397949219	3	430.278585	1287.81392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.46	1	131.65	131.15	132.15	0.18953								0	0	0	0.15629	1	51711	51711		0.13989	0.056541	1		+		21525	28268	15607	15717	21096	21096					0.18153015130405947
IKKKRHTLS	9	Unmodified	_IKKKRHTLS_					0	0	0			REV__nc|nan|Q6P387-2|C16orf46	REV__nc|nan|Q6P387-2|C16orf46	MULTI-SECPEP	A375_MHC_IP_R1	1	371.6174011230469	3	370.90838	1109.70331	0.23935	8.8776E-05	0.23811	8.8316E-05	0.47745	0.00017709	370.90845764204244	24.723	0.20327	24.723	24.597	24.801	0					5	3	2	0	0	0	0.81516	1	7034	7034		1.9064	0.9441	1	2936000	+		21526	27578	15608	15718	21097	21097					0.15284795142179064
IKKLSIKIKK	10	Unmodified	_IKKLSIKIKK_					0	0	0			REV__tr|U7SMQ7|U7SMQ7_FUSNUATPsynthaseepsilonchainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpCPE=3SV=1	REV__tr|U7SMQ7|U7SMQ7_FUSNUATPsynthaseepsilonchainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpCPE=3SV=1	MSMS	A375_MHC_IP_R1	1	400.2800598144531	3	400.291831	1197.85366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.244	1	73.244	72.744	73.744	0								0	0	0	0.15642	1	26662	26662		0	0	1		+		21527	28308	15609	15719	21098	21098					0.26265142081069826
IKKLSIKIKKQ	11	Unmodified	_IKKLSIKIKKQ_					0	0	0			REV__tr|U7SMQ7|U7SMQ7_FUSNUATPsynthaseepsilonchainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpCPE=3SV=1	REV__tr|U7SMQ7|U7SMQ7_FUSNUATPsynthaseepsilonchainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpCPE=3SV=1	MSMS	A375_MHC_IP_R2	2	442.9506530761719	3	442.978024	1325.91224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.929	1	41.703	41.203	42.203	0.77451								0	0	0	0.1636	1	15171	15171		0	0	1		+		21528	28308	15610	15720	21099	21099					0.2623219865556621
IKKMRRQQYIA	11	Unmodified	_IKKMRRQQYIA_					0	0	0			REV__SAMD7|p.E112K|1|0.35|ENSG00000187033|chr3:169926596-169926596|G/A|missense_variant	REV__SAMD7|p.E112K|1|0.35|ENSG00000187033|chr3:169926596-169926596|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	359.8825988769531	4	359.464507	1433.82892	-0.11949	-4.2954E-05	-2.1042	-0.00075639	-2.2237	-0.00079934	359.7144078828106	46.166	0.45459	46.931	46.704	47.159	0.76519					11	8	2	0	0	0	1.0012	1	17266	17266		0.36667	0	1	1705100	+		21529	27908	15611	15721	21100	21100					0.12936138936106545
IKKNKERKLEE	11	Unmodified	_IKKNKERKLEE_					0	0	0			REV__ENST00000409458.3_2_7:23296839-23297073:+|nuORF	REV__ENST00000409458.3_2_7:23296839-23297073:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	472.6630859375	3	472.284064	1413.83036	-0.66844	-0.00031569	-0.65353	-0.00030865	-1.322	-0.00062435	472.2836553186912	132.18	1.4628	132.18	131.13	132.59	0					107	28	5	0	0	0	0.73881	1	51045	51045		0.50596	0.50596	1	80566000	+		21530	24467	15612	15722	21101	21101					0.14000051505831834
IKKRKAKKKKF	11	Unmodified	_IKKRKAKKKKF_					0	0	0			REV__ENSG00000134077|ENST00000452837|THUMPD3	REV__ENSG00000134077|ENST00000452837|THUMPD3	MSMS	A375_MHC_IP_R2	2	702.0254516601562	2	701.990281	1401.96601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.25	1	104.01	103.51	104.51	0.76428								0	0	0	0.1636	1	39105	39105		0	0	1		+		21531	18752	15613	15723	21102	21102					0.2811041587794989
IKKSRELN	8	Unmodified	_IKKSRELN_					0	0	0		nc|ENSG00000133114|Q8IXQ4-3|GPALPP1;nc|ENSG00000133114|Q8IXQ4-2|GPALPP1;ENSG00000133114|ENST00000379151|GPALPP1	nc|ENSG00000133114|Q8IXQ4-3|GPALPP1	nc|ENSG00000133114|Q8IXQ4-3|GPALPP1	MULTI-MSMS	A375_MHC_IP_R1	1	496.3585205078125	2	494.300916	986.587279	-0.60062	-0.00029689	-0.43613	-0.00021558	-1.0368	-0.00051247	494.3004142719652	131.86	1.4195	131.86	131.58	133	0					74	27	5	0	0	0	0.77804	1	50856	50856		2.0598	0.21551	1	97767000			21532	4489	15614	15724	21103	21103					0.09344851571472645
IKKTHRLKIKG	11	Unmodified	_IKKTHRLKIKG_					0	0	0		ENST00000475406.5_1_1:210405005-210405083:-|nuORF	ENST00000475406.5_1_1:210405005-210405083:-|nuORF	ENST00000475406.5_1_1:210405005-210405083:-|nuORF	MSMS	A375_MHC_IP_R1	1	441.1689758300781	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.368	1	18.368	17.868	18.868	0								0	0	0	0.16358	1	4379	4379		0.094841	0.011491	1				21533	12418	15615	15725	21104	21104					0.22417277055797058
IKKVKKKKKK	10	Unmodified	_IKKVKKKKKK_					0	0	0		ENSG00000187257|ENST00000334955|RSBN1L;RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	MSMS	A375_MHC_IP_R1	1	419.3274841308594	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.548	1	24.548	24.048	25.048	0								0	0	0	0.15622	1	6992	6992		0.62683	0.48693	1				21534	8817	15616	15726	21105	21105					0.3054822610067731
IKKVKKKKKKK	11	Unmodified	_IKKVKKKKKKK_					0	0	0		ENSG00000187257|ENST00000334955|RSBN1L;RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	MSMS	A375_MHC_IP_R2	2	692.5059814453125	2	692.516131	1383.01771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.898	1	75.635	75.135	76.135	0.73752								0	0	0	0.1636	1	28429	28429		0	0	1				21535	8817	15617	15727	21106	21106					0.34152159571863194
IKKVKKKKKKK	11	Unmodified	_IKKVKKKKKKK_					0	0	0		ENSG00000187257|ENST00000334955|RSBN1L;RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	MSMS	A375_MHC_IP_R2	2	692.91552734375	2	692.516131	1383.01771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.151	1	75.888	75.388	76.388	0.73752								0	0	0	0.1636	1	28524	28524		0	0	1				21536	8817	15617	15727	21107	21107					0.34152159571863194
IKKVSGPQLK	10	Unmodified	_IKKVSGPQLK_					0	0	0			REV__ENSG00000130176|ENST00000252456|CNN1	REV__ENSG00000130176|ENST00000252456|CNN1	MULTI-SECPEP	A375_MHC_IP_R1	1	366.972900390625	3	366.572886	1096.69683	0.11978	4.3908E-05	0.039256	1.439E-05	0.15904	5.8298E-05	366.57289220827494	33.047	1.4683	33.047	32.634	34.103	0					51	28	2	0	0	0	0.20175	1	10665	10665		39.923	0	1	130590000	+		21537	18522	15618	15728	21108	21108					0.15234857190785078
IKKYWRHKKLH	11	Unmodified	_IKKYWRHKKLH_					0	0	0			REV__ENST00000565049.1_1_16:33499109-33500962:-|nuORF	REV__ENST00000565049.1_1_16:33499109-33500962:-|nuORF	MSMS	A375_MHC_IP_R2	2	768.9822387695312	2	768.967337	1535.92012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.44	1	123.82	123.32	124.32	0.3766								0	0	0	0.16353	1	47434	47434		0.35063	0.043601	1		+		21538	26225	15619	15729	21109	21109					0.17359770695702537
IKLFKVIKKL	10	Unmodified	_IKLFKVIKKL_					0	0	0			REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1	REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1	MSMS	A375_MHC_IP_R1	1	615.7249755859375	2	615.439027	1228.8635	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.235	1	86.235	85.735	86.735	0								0	0	0	0.15629	1	31616	31616		0.40072	0	1		+		21539	28567	15620	15730	21110	21110					0.25822330086521106
IKLIAKVQPKW	11	Unmodified	_IKLIAKVQPKW_					0	0	0			REV__ENST00000194097.8_1_5:70282595-70283642:-|nuORF	REV__ENST00000194097.8_1_5:70282595-70283642:-|nuORF	MSMS	A375_MHC_IP_R1	1	662.4442749023438	2	662.42919	1322.84383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.927	1	85.927	85.427	86.427	0								0	0	0	0.16334	1	31498	31498		1.3295	0	1		+		21540	23018	15621	15731	21111	21111					0.19531954075728208
IKLIPTLILLY	11	Unmodified	_IKLIPTLILLY_					0	0	0			REV__OR5L2|p.T224P|1|0.28|ENSG00000205030|chr11:55827888-55827888|A/C|missense_variant	REV__OR5L2|p.T224P|1|0.28|ENSG00000205030|chr11:55827888-55827888|A/C|missense_variant	MSMS	A375_MHC_IP_R2	2	650.5015869140625	2	650.43615	1298.85775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.263	1	24.907	24.407	25.407	0.64368								0	0	0	0.16353	1	7943	7943		0.35063	0.35063	1		+		21541	27691	15622	15732	21112	21112					0.2202718678418023
IKLLELIQRRR	11	Unmodified	_IKLLELIQRRR_					0	0	0		UTP6|p.N63K|1|0.38|ENSG00000108651|chr17:31895000-31895000|A/C|missense_variant	UTP6|p.N63K|1|0.38|ENSG00000108651|chr17:31895000-31895000|A/C|missense_variant	UTP6|p.N63K|1|0.38|ENSG00000108651|chr17:31895000-31895000|A/C|missense_variant	MSMS	A375_MHC_IP_R1	1	719.8132934570312	2	719.472452	1436.93035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.67	1	145.67	145.17	146.17	0								0	0	0	0.16354	1	55802	55802		0.30703	0	1				21542	30134	15623	15733	21113	21113					0.22936333630286754
IKLLELIQRRR	11	Unmodified	_IKLLELIQRRR_					0	0	0		UTP6|p.N63K|1|0.38|ENSG00000108651|chr17:31895000-31895000|A/C|missense_variant	UTP6|p.N63K|1|0.38|ENSG00000108651|chr17:31895000-31895000|A/C|missense_variant	UTP6|p.N63K|1|0.38|ENSG00000108651|chr17:31895000-31895000|A/C|missense_variant	MSMS	A375_MHC_IP_R1	1	719.8720703125	2	719.472452	1436.93035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.71	1	145.71	145.21	146.21	0								0	0	0	0.16354	1	55816	55816		0.30703	0	1				21543	30134	15623	15733	21114	21114					0.22936333630286754
IKLLKGREV	9	Unmodified	_IKLLKGREV_					0	0	0		DDX50|p.G156E|1|0.33|ENSG00000107625|chr10:68911074-68911074|G/A|missense_variant	DDX50|p.G156E|1|0.33|ENSG00000107625|chr10:68911074-68911074|G/A|missense_variant	DDX50|p.G156E|1|0.33|ENSG00000107625|chr10:68911074-68911074|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	353.2573547363281	3	352.569365	1054.68626	-0.33706	-0.00011884	-0.073684	-2.5979E-05	-0.41074	-0.00014481	352.56931306770605	28.002	0.35586	28.681	28.502	28.858	0.67857					16	6	3	0	0	0	0.31609	1	9606	9606		29.437	2.2139	1	7778800			21544	729	15624	15734	21115	21115					0.16110874536366282
IKLNLLRNL	9	Unmodified	_IKLNLLRNL_					0	0	0		FSIP2|p.T6548Lfs*12|1|0.3|ENSG00000188738|chr2:185808944-185808944|A/-|frameshift_variant	FSIP2|p.T6548Lfs*12|1|0.3|ENSG00000188738|chr2:185808944-185808944|A/-|frameshift_variant	FSIP2|p.T6548Lfs*12|1|0.3|ENSG00000188738|chr2:185808944-185808944|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	366.64874267578125	3	366.244881	1095.71281	-0.22226	-8.1402E-05	0.1314	4.8126E-05	-0.090858	-3.3276E-05	366.2449070858328	37.89	1.6825	38.664	37.77	39.453	0.77451					75	32	3	0	0	0	0.19747	1	13556	13556		38.176	1.6694	1	3710300			21545	14025	15625	15735	21116	21116					0.16878563427712834
IKLPPNELSKL	11	Unmodified	_IKLPPNELSKL_					0	0	0			REV__ENSG00000173769|ENST00000309765|TOPAZ1	REV__ENSG00000173769|ENST00000309765|TOPAZ1	MULTI-MSMS	A375_MHC_IP_R1	1	418.3269958496094	3	417.927218	1250.75982	0.056108	2.3449E-05	0.09385	3.9222E-05	0.14996	6.2672E-05	417.9271982860569	52.603	1.4701	52.603	52.085	53.555	0					38	28	2	0	0	0	0.72829	1	18758	18758		10.527	1.7757	1	2599700	+		21546	21247	15626	15736	21117	21117					0.14447378188174298
IKLWDIRR	8	Unmodified	_IKLWDIRR_					0	0	0		DCAF11|p.S389C|1|0.4|ENSG00000100897|chr14:24120910-24120910|A/T|missense_variant;ENST00000566611.5_1_16:57771155-57785968:+|nuORF;nc|ENSG00000100897|Q8TEB1-3|DCAF11;nc|ENSG00000100897|Q8TEB1-2|DCAF11;ENSG00000100897|ENST00000446197|DCAF11;ENSG00000140854|ENST00000379661|KATNB1	DCAF11|p.S389C|1|0.4|ENSG00000100897|chr14:24120910-24120910|A/T|missense_variant	DCAF11|p.S389C|1|0.4|ENSG00000100897|chr14:24120910-24120910|A/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	367.6076354980469	3	367.229342	1098.6662	-0.12248	-4.4978E-05	-0.65086	-0.00023901	-0.77334	-0.00028399	367.22909728648466	38.286	0.35603	38.286	38.067	38.423	0					15	6	3	0	0	0	0.7769	1	12894	12894		6.2058	0	1	4888600			21547	712	15627	15737	21118	21118					0.12081123596408361
IKMHDNTSY	9	Unmodified	_IKMHDNTSY_					0	0	0			REV__nc|ENSG00000138653|Q9H3R1-2|NDST4	REV__nc|ENSG00000138653|Q9H3R1-2|NDST4	MULTI-SECPEP	A375_MHC_IP_R1	1	370.2890319824219	3	370.174574	1107.50189	0.59282	0.00021945	0.095284	3.5272E-05	0.6881	0.00025472	370.17456336910857	21.727	0.50787	21.727	21.505	22.013	0					11	9	2	0	0	0	0.78798	1	5796	5796		0.18151	0.18151	1	635370	+		21548	27254	15628	15738	21119	21119					-0.04755681676488166
IKMKEFNEAR	10	Unmodified	_IKMKEFNEAR_					0	0	0			REV__CCDC90B|p.N141_E142insF|1|0.62|ENSG00000137500|chr11:83274641-83274642|-/AAA|inframe_insertion	REV__CCDC90B|p.N141_E142insF|1|0.62|ENSG00000137500|chr11:83274641-83274642|-/AAA|inframe_insertion	MULTI-MSMS	A375_MHC_IP_R1	1	633.7691040039062	2	633.337172	1264.65979	-0.6703	-0.00042453	0.74967	0.0004748	0.07937	5.0268E-05	633.3382845747257	128.82	0.81468	128.82	128.43	129.25	0					30	15	3	0	0	0	0.71466	1	49509	49509		5.7319	0.83484	1	4901400	+		21549	15600	15629	15739	21120	21120					0.03804817582704345
IKMRKQYKKKR	11	Unmodified	_IKMRKQYKKKR_					0	0	0			REV__ENSG00000124383|ENST00000244230|MPHOSPH10	REV__ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-SECPEP	A375_MHC_IP_R2	2	502.38214111328125	3	502.985295	1505.93406	-0.45228	-0.00022749	-0.46842	-0.00023561	-0.9207	-0.0004631	503.31920638573797	148.82	0.65146	148.84	148.25	148.9	0.018692					20	14	2	0	0	0	1.0015	1	57704	57704		0	0	1	142160	+		21550	18301	15630	15740	21121	21121					0.2013268013247398
IKNFDIKA	8	Unmodified	_IKNFDIKA_					0	0	0		CHIA|p.S341N|1|0.27|ENSG00000134216|chr1:111319226-111319226|G/A|missense_variant	CHIA|p.S341N|1|0.27|ENSG00000134216|chr1:111319226-111319226|G/A|missense_variant	CHIA|p.S341N|1|0.27|ENSG00000134216|chr1:111319226-111319226|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	475.1789855957031	2	474.779285	947.544017	-0.96625	-0.00045875	-0.0026267	-1.2471E-06	-0.96887	-0.00046	474.7792657298574	26.125	0.45705	26.785	26.551	27.008	0.65992					14	8	2	0	0	0	0.57209	1	8798	8798		46.021	4.1813	1	2939000			21551	388	15631	15741	21122	21122					0.06814661794169297
IKNKKEIDK	9	Unmodified	_IKNKKEIDK_					0	0	0			REV__tr|U7T3X0|U7T3X0_FUSNUEnoylreductase(ER)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00645PE=4SV=1	REV__tr|U7T3X0|U7T3X0_FUSNUEnoylreductase(ER)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00645PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	371.9885559082031	3	372.564279	1114.67101	0.65681	0.00024471	-0.62937	-0.00023448	0.027443	1.0224E-05	372.56410994257413	22.022	0.40744	22.022	21.808	22.216	0					10	7	2	0	0	0	0.79966	1	5814	5814		3.5871	0	1	1765600	+		21552	28789	15632	15742	21123	21123					0.11825962948478264
IKNKNKLKF	9	Unmodified	_IKNKNKLKF_					0	0	0			REV__tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1	REV__tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1	MSMS	A375_MHC_IP_R1	1	378.260986328125	3	378.244881	1131.71281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.264	1	38.264	37.764	38.764	0								0	0	0	0.15486	1	12964	12964		8.1555	0.54658	1		+		21553	28624	15633	15743	21124	21124					0.1522256342768742
IKNRFKRVI	9	Unmodified	_IKNRFKRVI_					0	0	0			REV__tr|U7SN73|U7SN73_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01691PE=4SV=1	REV__tr|U7SN73|U7SN73_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01691PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	392.3242492675781	3	391.924142	1172.7506	-0.30165	-0.00011823	0.26928	0.00010554	-0.032369	-1.2686E-05	391.9243187086331	50.651	0.55612	51.405	51.159	51.715	0.75406					22	10	3	0	0	0	0.73008	1	19069	19069		12.241	4.0851	1	3703700	+		21554	28312	15634	15744	21125	21125					0.1711307441316876
IKNYNYNPV	9	Unmodified	_IKNYNYNPV_					0	0	0		tr|U7SYE8|U7SYE8_FUSNUFAD-bindingFR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00839PE=4SV=1	tr|U7SYE8|U7SYE8_FUSNUFAD-bindingFR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00839PE=4SV=1	tr|U7SYE8|U7SYE8_FUSNUFAD-bindingFR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00839PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	563.1889038085938	2	562.790381	1123.56621	-0.95703	-0.00053861	-1.5148	-0.00085253	-2.4719	-0.0013911	562.7895458274902	56.615	0.76585	57.365	57.101	57.867	0.75014					25	14	2	0	0	0	0.27715	1	21407	21407		32.305	6.9062	1	1856600			21555	29837	15635	15745	21126	21126					0.009368414719347129
IKNYNYNPV	9	Unmodified	_IKNYNYNPV_					0	0	0		tr|U7SYE8|U7SYE8_FUSNUFAD-bindingFR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00839PE=4SV=1	tr|U7SYE8|U7SYE8_FUSNUFAD-bindingFR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00839PE=4SV=1	tr|U7SYE8|U7SYE8_FUSNUFAD-bindingFR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00839PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	562.790381	1123.56621	-0.42859	-0.00024121	-1.3154	-0.00074028	-1.744	-0.00098149	563.2908297492166	57.592	0.61025	57.592	57.263	57.873	0	0.11355	6.3347E-05	NaN	32.305	35	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2410100			21556	29837	15635	15745							0.009368414719347129
IKPVEYRLQYK	11	Unmodified	_IKPVEYRLQYK_					0	0	0		nc|ENSG00000089177|Q96L93-6|KIF16B;nc|ENSG00000089177|Q96L93-4|KIF16B;ENSG00000089177|ENST00000354981|KIF16B;nc|ENSG00000089177|Q96L93-2|KIF16B;nc|ENSG00000089177|Q96L93-5|KIF16B	nc|ENSG00000089177|Q96L93-6|KIF16B	nc|ENSG00000089177|Q96L93-6|KIF16B	MULTI-MSMS	A375_MHC_IP_R2	2	480.01324462890625	3	479.613522	1435.81874	-0.56256	-0.00026981	-0.24173	-0.00011594	-0.80429	-0.00038575	479.6133497514107	77.264	0.50816	78.007	77.757	78.265	0.74293					27	9	4	0	0	0	0.73016	1	29415	29415		8.7518	8.7518	1	3900100			21557	1919	15636	15746	21127	21127					0.11825854482503928
IKPVEYRLQYK	11	Unmodified	_IKPVEYRLQYK_					0	0	0		nc|ENSG00000089177|Q96L93-6|KIF16B;nc|ENSG00000089177|Q96L93-4|KIF16B;ENSG00000089177|ENST00000354981|KIF16B;nc|ENSG00000089177|Q96L93-2|KIF16B;nc|ENSG00000089177|Q96L93-5|KIF16B	nc|ENSG00000089177|Q96L93-6|KIF16B	nc|ENSG00000089177|Q96L93-6|KIF16B	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	479.613522	1435.81874	-0.56256	-0.00026981	-0.24173	-0.00011594	-0.80429	-0.00038575	479.6133497514107	77.264	0.50816	78.007	77.757	78.265	0.74293	-0.070268	0.00010741	NaN	8.7518	27	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3900100			21558	1919	15636	15746							0.11825854482503928
IKQAEGPLRF	10	Unmodified	_IKQAEGPLRF_					0	0	0			REV__ENSG00000124198|ENST00000371917|ARFGEF2;REV__ENSG00000100055|ENST00000248901|CYTH4;REV__ENSG00000066777|ENST00000262215|ARFGEF1	REV__ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-SECPEP	A375_MHC_IP_R1	1	386.2889099121094	3	386.892507	1157.65569	0.053067	2.0531E-05	0.12298	4.758E-05	0.17605	6.8112E-05	386.8926027076366	66.268	0.45531	66.268	66.022	66.478	0					13	8	2	0	0	0	0.93194	1	23946	23946		3.0723	0	1	863120	+		21559	16524;17045;18281	15637	15747	21128	21128					0.08317096151336045
IKQKDSFSR	9	Unmodified	_IKQKDSFSR_					0	0	0			REV__nc|ENSG00000119523|Q9H553-2|ALG2	REV__nc|ENSG00000119523|Q9H553-2|ALG2	MULTI-MSMS	A375_MHC_IP_R2	2	370.6243591308594	3	370.208495	1107.60366	-0.27784	-0.00010286	-0.15982	-5.9166E-05	-0.43766	-0.00016203	370.20843440578466	28.643	0.60107	29.341	29.08	29.681	0.69872					22	11	3	0	0	0	0.69317	1	9824	9824		5.0475	0.85802	1	87119000	+		21560	18076	15638	15748	21129	21129					0.0541593273756007
IKQSWRLLL	9	Unmodified	_IKQSWRLLL_					0	0	0			REV__ENST00000358738.3_1_14:64989177-64989240:+|nuORF	REV__ENST00000358738.3_1_14:64989177-64989240:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	386.2889099121094	3	386.244881	1155.71281	0.058336	2.2532E-05	1.0604	0.00040959	1.1188	0.00043212	386.2450876415611	66.354	0.40631	66.354	66.122	66.529	0					16	7	3	0	0	0	0.8028	1	23946	23946		0.96228	0	1	1110300	+		21561	23863	15639	15749	21130	21130					0.14118563427700792
IKRERRLQI	9	Unmodified	_IKRERRLQI_					0	0	0		ENSG00000115286|ENST00000233627|NDUFS7	ENSG00000115286|ENST00000233627|NDUFS7	ENSG00000115286|ENST00000233627|NDUFS7	MULTI-MSMS	A375_MHC_IP_R1	1	606.787109375	2	606.388388	1210.76222	-0.66342	-0.00040229	-0.98175	-0.00059532	-1.6452	-0.00099761	606.3876343517386	138.89	0.30292	138.89	138.76	139.06	0					9	5	2	0	0	0	0.7724	1	53439	53439		0.52476	0	1	882470			21562	3295	15640	15750	21131	21131					0.16527271436507363
IKRERRLQI	9	Unmodified	_IKRERRLQI_					0	0	0		ENSG00000115286|ENST00000233627|NDUFS7	ENSG00000115286|ENST00000233627|NDUFS7	ENSG00000115286|ENST00000233627|NDUFS7	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	606.388388	1210.76222	-0.66342	-0.00040229	-0.98175	-0.00059532	-1.6452	-0.00099761	606.3876343517386	138.89	0.30292	138.89	138.76	139.06	0	0	0	NaN	0.52476	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	882470			21563	3295	15640	15750							0.16527271436507363
IKRILSLIQHL	11	Unmodified	_IKRILSLIQHL_					0	0	0			REV__ENST00000347055.3_1_2:88328059-88333697:-|nuORF	REV__ENST00000347055.3_1_2:88328059-88333697:-|nuORF	MSMS	A375_MHC_IP_R2	2	667.7883911132812	2	667.437547	1332.86054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.95	1	144.97	144.47	145.47	0.021408								0	0	0	0.16354	1	56604	56604		0.30703	0	1		+		21564	23779	15641	15751	21132	21132					0.2074245496171443
IKRKQDQLPPR	11	Unmodified	_IKRKQDQLPPR_					0	0	0			REV__ENST00000502269.1_1_5:78908746-78909782:+|nuORF	REV__ENST00000502269.1_1_5:78908746-78909782:+|nuORF	MSMS	A375_MHC_IP_R1	1	690.0921630859375	2	689.91751	1377.82047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.18	1	102.18	101.68	102.68	0								0	0	0	0.16273	1	37549	37549		4.5289	0.33936	1		+		21565	25496	15642	15752	21133	21133					0.14666908291110303
IKRLFRDNT	9	Unmodified	_IKRLFRDNT_					0	0	0			REV__ENST00000555858.1_1_14:64902319-64905932:+|nuORF	REV__ENST00000555858.1_1_14:64902319-64905932:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	388.62799072265625	3	388.22789	1161.66184	-0.4021	-0.00015611	-0.014545	-5.6467E-06	-0.41664	-0.00016175	388.2279600649362	40.98	0.60904	41.754	41.54	42.149	0.77451					18	11	2	0	0	0	0.62591	1	15236	15236		13.615	1.3742	1	2196500	+		21566	17116	15643	15753	21134	21134					0.08747614382855318
IKRLFRDNT	9	Unmodified	_IKRLFRDNT_					0	0	0			REV__ENST00000555858.1_1_14:64902319-64905932:+|nuORF	REV__ENST00000555858.1_1_14:64902319-64905932:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	388.22789	1161.66184	-0.4021	-0.00015611	-0.014545	-5.6467E-06	-0.41664	-0.00016175	388.2279600649362	40.98	0.60904	41.754	41.54	42.149	0.77451	-0.15126	0.00031239	NaN	13.615	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2196500	+		21567	17116	15643	15753							0.08747614382855318
IKRLIEESDL	10	Unmodified	_IKRLIEESDL_					0	0	0			REV__SCN10A|p.P1094S|1|0.48|ENSG00000185313|chr3:38723502-38723502|G/A|missense_variant	REV__SCN10A|p.P1094S|1|0.48|ENSG00000185313|chr3:38723502-38723502|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	609.4356079101562	2	608.350803	1214.68705	-0.68177	-0.00041475	0.15762	9.589E-05	-0.52415	-0.00031886	608.3507535774452	141.92	1.5298	141.92	140.86	142.38	0					62	29	3	0	0	0	0.71944	1	54467	54467		3.5965	0	1	4408700	+		21568	27916	15644	15754	21135	21135					0.08829624394775237
IKRLQTFCSF	10	Unmodified	_IKRLQTFCSF_					0	0	0			REV__ENST00000575976.1_1_17:5290923-5291292:-|nuORF	REV__ENST00000575976.1_1_17:5290923-5291292:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	621.6943359375	2	621.836808	1241.65906	-1.18	-0.00073378	1.3433	0.00083531	0.16328	0.00010153	621.8381734892632	56.832	0.30417	57.582	57.408	57.712	0.75015					8	5	2	0	0	0	0.79457	1	21497	21497		15.248	0	1	1392200	+		21569	26311	15645	15755	21136	21136					0.047900229336619304
IKRQYEAIKS	10	Unmodified	_IKRQYEAIKS_					0	0	0			REV__tr|U7SKG3|U7SKG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01983PE=4SV=1	REV__tr|U7SKG3|U7SKG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01983PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	412.61932373046875	3	412.575067	1234.70337	0.07039	2.9041E-05	0.19425	8.0144E-05	0.26464	0.00010918	412.5751425128145	19.528	0.53787	19.528	19.238	19.776	0					29	10	4	0	0	0	0.70972	1	4941	4941		7.9454	2.8979	1	19483000	+		21570	28250	15646	15756	21137	21137					0.09540750351493443
IKRRFADKVEK	11	Unmodified	_IKRRFADKVEK_					0	0	0			REV__nc|ENSG00000241356|P0C626|OR5G3	REV__nc|ENSG00000241356|P0C626|OR5G3	MSMS	A375_MHC_IP_R2	2	695.515869140625	2	695.419885	1388.82522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.11	1	115.8	115.3	116.3	0.68999								0	0	0	0.16213	1	43392	43392		7.609	2.3121	1		+		21571	27520	15647	15757	21138	21138					0.1463579243386448
IKRTSENQW	9	Unmodified	_IKRTSENQW_					0	0	0		nc|ENSG00000147799|Q9C0H5|ARHGAP39;ENSG00000147799|ENST00000377307|ARHGAP39	nc|ENSG00000147799|Q9C0H5|ARHGAP39	nc|ENSG00000147799|Q9C0H5|ARHGAP39	MULTI-SECPEP	A375_MHC_IP_R1	1	581.7044067382812	2	581.304187	1160.59382	0.054803	3.1857E-05	0.36644	0.00021302	0.42125	0.00024487	581.304306113325	45.54	0.45354	45.54	45.284	45.738	0					14	8	2	0	0	0	0.67483	1	15956	15956		14.838	0	1	3380800			21572	5705	15648	15758	21139	21139					0.01994744732178333
IKRWWEYHVQY	11	Unmodified	_IKRWWEYHVQY_					0	0	0			REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MSMS	A375_MHC_IP_R2	2	536.6103515625	3	536.60877	1606.80448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.7	1	75.438	74.938	75.938	0.73752								0	0	0	0.16351	1	28353	28353		0.45452	0.35968	1		+		21573	19903	15649	15759	21140	21140					0.025352020542186438
IKSGFESLAKR	11	Unmodified	_IKSGFESLAKR_					0	0	0			REV__nc|ENSG00000175216|Q14008-2|CKAP5	REV__nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	A375_MHC_IP_R1	1	412.5995788574219	3	412.575067	1234.70337	0.07039	2.9041E-05	0.19425	8.0144E-05	0.26464	0.00010918	412.5751425128145	19.528	0.53787	19.528	19.238	19.776	0					29	10	4	0	0	0	0.71778	1	4831	4831		14.171	3.1054	1	19483000	+		21574	21331	15650	15760	21141	21141					0.09540750351493443
IKSLFEVTL	9	Unmodified	_IKSLFEVTL_					0	0	0			REV__tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1	REV__tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	525.71484375	2	525.3157	1048.61685	-0.35695	-0.00018751	-0.66214	-0.00034783	-1.0191	-0.00053534	525.31527764621	84.944	0.45947	85.68	85.422	85.882	0.73601					18	8	3	0	0	0	0.27742	1	32306	32306		51.63	9.7902	1	2001200	+		21575	28628	15651	15761	21142	21142					0.09448370796940253
IKSRHLKKI	9	Unmodified	_IKSRHLKKI_					0	0	0		ENST00000340535.11_1_1:222824030-222824207:+|nuORF	ENST00000340535.11_1_1:222824030-222824207:+|nuORF	ENST00000340535.11_1_1:222824030-222824207:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1123.256591796875	1	1122.74697	1121.7397	0.085109	9.5556E-05	0.32254	0.00036214	0.40765	0.00045769	1122.7473243339425	118.57	0.66062	118.57	118.42	119.08	0					16	12	2	0	0	0	0.78348	1	43654	43654		0.45834	0	1	24030000			21576	10858	15652	15762	21143	21143					0.18369672038897988
IKSSGRFLW	9	Unmodified	_IKSSGRFLW_					0	0	0		ENSG00000166342|ENST00000327305|NETO1;nc|ENSG00000166342|Q8TDF5-2|NETO1;nc|ENSG00000166342|Q8TDF5-1|NETO1	ENSG00000166342|ENST00000327305|NETO1	ENSG00000166342|ENST00000327305|NETO1	MULTI-MSMS	A375_MHC_IP_R1	1	365.6102600097656	3	365.209948	1092.60801	0.16305	5.9547E-05	0.21476	7.8434E-05	0.37781	0.00013798	365.21007897466467	64.728	0.5097	64.728	64.495	65.005	0					21	9	3	0	0	0	0.6656	1	23433	23433		6.6304	1.3335	1	1932000			21577	7062	15653	15763	21144	21144					0.06541441951117122
IKTEKVMGEE	10	Unmodified	_IKTEKVMGEE_					0	0	0		tr|U7SPB0|U7SPB0_FUSNUPhosphatidylserinedecarboxylaseproenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=psdPE=3SV=1	tr|U7SPB0|U7SPB0_FUSNUPhosphatidylserinedecarboxylaseproenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=psdPE=3SV=1	tr|U7SPB0|U7SPB0_FUSNUPhosphatidylserinedecarboxylaseproenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=psdPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	582.7010498046875	2	582.302464	1162.59037	-0.42811	-0.00024929	-1.9867	-0.0011569	-2.4149	-0.0014062	582.3011584321554	39.624	0.45368	39.624	39.391	39.845	0					19	8	3	0	0	0	0.83355	1	13616	13616		17.113	7.039	1	3018400			21578	29578	15654	15764	21145	21145					0.015583138433157728
IKTHDKLVAER	11	Unmodified	_IKTHDKLVAER_					0	0	0			REV__nc|ENSG00000137337|Q14676-2|MDC1	REV__nc|ENSG00000137337|Q14676-2|MDC1	MULTI-MSMS	A375_MHC_IP_R2	2	655.78173828125	2	655.382968	1308.75138	-0.83498	-0.00054723	-0.5154	-0.00033779	-1.3504	-0.00088502	655.3825087215033	131.58	6.1686	131.77	131.29	137.46	0.18953					405	120	8	0	0	0	0.73672	1	51639	51639		2.4985	0	1	1295200000	+		21579	19001	15655	15765	21146	21146					0.10935824271541605
IKTKEIRSCK	10	Unmodified	_IKTKEIRSCK_					0	0	0		FSD2|p.E483K|1|0.19|ENSG00000186628|chr15:82768986-82768986|C/T|missense_variant	FSD2|p.E483K|1|0.19|ENSG00000186628|chr15:82768986-82768986|C/T|missense_variant	FSD2|p.E483K|1|0.19|ENSG00000186628|chr15:82768986-82768986|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	402.6311340332031	3	402.572669	1204.69618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.969	1	20.969	20.469	21.469	0								0	0	0	0.15486	1	5451	5451		5.0475	1.451	1				21580	14022	15656	15766	21147	21147					0.10201694479428625
IKTNKDVVF	9	Unmodified	_IKTNKDVVF_					0	0	0			REV__CLCA1|p.M550I|1|0.3|ENSG00000016490|chr1:86493569-86493569|G/A|missense_variant	REV__CLCA1|p.M550I|1|0.3|ENSG00000016490|chr1:86493569-86493569|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	355.6012878417969	3	355.209725	1062.60735	-0.35199	-0.00012503	-0.1803	-6.4044E-05	-0.53229	-0.00018907	355.2096388658743	26.995	0.41024	27.658	27.469	27.879	0.66319					20	7	3	0	0	0	0.69317	1	9269	9269		7.609	0.50723	1	14471000	+		21581	15794	15657	15767	21148	21148					0.07854602511406483
IKTTTRDV	8	Unmodified	_IKTTTRDV_					0	0	0			REV__nc|ENSG00000166435|Q6P2D8-3|XRRA1	REV__nc|ENSG00000166435|Q6P2D8-3|XRRA1	MSMS	A375_MHC_IP_R1	1	467.6331787109375	2	467.271824	932.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.17	1	103.17	102.67	103.67	0								0	0	0	0.16876	1	37909	37909		10.824	0.64053	1		+		21582	27337	15658	15768	21149	21149					0.06013169926188766
IKVLKSSKVT	10	Unmodified	_IKVLKSSKVT_					0	0	0		ENST00000469611.1_1_15:52679971-52688515:-|nuORF	ENST00000469611.1_1_15:52679971-52688515:-|nuORF	ENST00000469611.1_1_15:52679971-52688515:-|nuORF	MSMS	A375_MHC_IP_R1	1	368.273193359375	3	368.244658	1101.71214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.203	1	38.203	37.703	38.703	0								0	0	0	0.15593	1	12937	12937		1.5923	0.63001	1				21583	12323	15659	15769	21150	21150					0.1653572398797678
IKVMISGRLN	10	Unmodified	_IKVMISGRLN_					0	0	0		tr|U7T295|U7T295_FUSNUSmallribosomalsubunitproteinuS3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsCPE=3SV=1	tr|U7T295|U7T295_FUSNUSmallribosomalsubunitproteinuS3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsCPE=3SV=1	tr|U7T295|U7T295_FUSNUSmallribosomalsubunitproteinuS3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsCPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	377.9535217285156	3	377.561993	1129.66415	0.37216	0.00014051	-0.46024	-0.00017377	-0.088083	-3.3257E-05	377.5618716673424	25.179	0.55945	25.179	25.002	25.562	0					18	10	3	0	0	0	0.57453	1	7284	7284		22.775	1.1848	1	12213000			21584	29922	15660	15770	21151	21151					0.10450326796308218
IKVYYKKY	8	Unmodified	_IKVYYKKY_					0	0	0			REV__tr|U7SU86|U7SU86_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01340PE=3SV=1	REV__tr|U7SU86|U7SU86_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01340PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	369.6287841796875	3	368.886582	1103.63792	-0.15375	-5.6716E-05	-1.5664	-0.00057781	-1.7201	-0.00063452	369.2203671436492	24.94	0.30438	25.583	25.364	25.668	0.64368					7	5	2	0	0	0	0.972	1	8235	8235		3.2813	0	1	1015300	+		21585	28540	15661	15771	21152	21152					0.09024380896471484
IKYVKYLY	8	Unmodified	_IKYVKYLY_					0	0	0		ENSG00000240720|ENST00000458448|LRRD1	ENSG00000240720|ENST00000458448|LRRD1	ENSG00000240720|ENST00000458448|LRRD1	MULTI-MSMS	A375_MHC_IP_R1	1	364.2831726074219	3	363.882949	1088.62702	0.029157	1.061E-05	-0.061448	-2.236E-05	-0.032291	-1.175E-05	363.8828849099811	86.639	0.60706	86.639	86.426	87.034	0					19	11	2	0	0	0	0.77797	1	31848	31848		1.4819	0.41044	1	1584600			21586	9777	15662	15772	21153	21153					0.08624978522198035
IKYVRGSDPV	10	Unmodified	_IKYVRGSDPV_					0	0	0		ENSG00000183291|ENST00000331835|SELENOF	ENSG00000183291|ENST00000331835|SELENOF	ENSG00000183291|ENST00000331835|SELENOF	MULTI-SECPEP	A375_MHC_IP_R1	1	568.1045532226562	2	567.319306	1132.62406	-0.46882	-0.00026597	0.27529	0.00015618	-0.19353	-0.00010979	567.3193814671042	47.133	0.36171	47.133	46.901	47.263	0					10	6	2	0	0	0	0.87043	1	16519	16519		15.248	1.3424	1	2202700			21587	8481	15663	15773	21154	21154					0.06305103397380662
IKYWSIYIFM	10	Unmodified	_IKYWSIYIFM_					0	0	0			REV__ENSG00000181552|ENST00000326783|EDDM3B	REV__ENSG00000181552|ENST00000326783|EDDM3B	MULTI-MSMS	A375_MHC_IP_R1	1	455.1637878417969	3	455.242149	1362.70462	-0.65426	-0.00029785	-0.17668	-8.0434E-05	-0.83094	-0.00037828	455.57664542650684	68.026	0.40482	68.026	67.804	68.209	0					17	7	4	0	0	0	0.70312	1	24595	24595		10.899	6.183	1	1176200	+		21588	21656	15664	15774	21155	21155					0.037772483960225145
ILAAVETRL	9	Unmodified	_ILAAVETRL_					0	0	0		ENSG00000143756|ENST00000366862|FBXO28;ENST00000483773.1_1_1:224301900-224321920:+|nuORF;nc|ENSG00000143756|Q9NVF7-2|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	MULTI-SECPEP	A375_MHC_IP_R2	2	492.71673583984375	2	493.305667	984.596781	-0.44256	-0.00021832	-0.69301	-0.00034187	-1.1356	-0.00056019	493.30511819870196	64.526	0.66117	65.266	64.954	65.615	0.74022					20	12	2	0	0	0	0.47674	1	24463	24463		36.506	20.357	1	2120600			21589	5430	15665	15775	21156	21156					0.10386619857001733
ILADTFIGV	9	Unmodified	_ILADTFIGV_					0	0	0		ENSG00000164659|ENST00000450689|ELAPOR2;nc|ENSG00000164659|A8MWY0-2|ELAPOR2;nc|ENSG00000164659|A8MWY0-3|ELAPOR2	ENSG00000164659|ENST00000450689|ELAPOR2	ENSG00000164659|ENST00000450689|ELAPOR2	MULTI-SECPEP	A375_MHC_IP_R1	1	948.941650390625	1	948.54006	947.532783	-0.4485	-0.00042542	0.74107	0.00070294	0.29258	0.00027752	948.5406814760429	124.02	0.50313	124.02	123.84	124.34	0					16	9	2	0	0	0	0.14105	1	46709	46709		42.095	7.9921	1	30168000			21590	6861	15666	15776	21157	21157					0.056918397000458754
ILADTFIGV	9	Unmodified	_ILADTFIGV_					0	0	0		ENSG00000164659|ENST00000450689|ELAPOR2;nc|ENSG00000164659|A8MWY0-2|ELAPOR2;nc|ENSG00000164659|A8MWY0-3|ELAPOR2	ENSG00000164659|ENST00000450689|ELAPOR2	ENSG00000164659|ENST00000450689|ELAPOR2	MULTI-MSMS	A375_MHC_IP_R2	2	948.2513427734375	1	948.54006	947.532783	-0.16825	-0.00015959	1.2447	0.0011806	1.0764	0.0010211	948.5414652616018	123.26	0.50464	123.64	123.38	123.88	0.3766					12	9	2	0	0	0	0.1478	1	47234	47234		42.095	15.211	1	24795000			21591	6861	15666	15776	21158	21158					0.056918397000458754
ILAFFFFTHRI	11	Unmodified	_ILAFFFFTHRI_					0	0	0		ENST00000589561.5_1_19:10746968-10754058:+|nuORF;nc|ENSG00000129353|Q8IWA5-3|SLC44A2;ENSG00000129353|ENST00000335757|SLC44A2;nc|ENSG00000129353|Q8IWA5-2|SLC44A2	ENST00000589561.5_1_19:10746968-10754058:+|nuORF	ENST00000589561.5_1_19:10746968-10754058:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	472.0115966796875	3	471.267686	1410.78123	-0.66246	-0.00031219	0.57284	0.00026996	-0.08962	-4.2235E-05	471.26782531698217	133.84	1.0149	133.84	133.46	134.47	0					51	19	3	0	0	0	1.0007	1	51807	51807		0.094841	0	1	6784600			21592	4189	15667	15777	21159	21159					0.09226808007565523
ILAFFFFTHRI	11	Unmodified	_ILAFFFFTHRI_					0	0	0		ENST00000589561.5_1_19:10746968-10754058:+|nuORF;nc|ENSG00000129353|Q8IWA5-3|SLC44A2;ENSG00000129353|ENST00000335757|SLC44A2;nc|ENSG00000129353|Q8IWA5-2|SLC44A2	ENST00000589561.5_1_19:10746968-10754058:+|nuORF	ENST00000589561.5_1_19:10746968-10754058:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	471.6676330566406	3	471.267686	1410.78123	-0.49955	-0.00023542	0.50764	0.00023924	0.0080937	3.8143E-06	471.26785707521105	133.84	1.3747	134	133.25	134.62	0.16487					55	26	3	0	0	0	1.0007	1	52842	52842		0.094841	0	1	5019300			21593	4189	15667	15777	21160	21160					0.09226808007565523
ILAGGKGF	8	Unmodified	_ILAGGKGF_					0	0	0			REV__nc|ENSG00000110076|Q9P2S2-2|NRXN2	REV__nc|ENSG00000110076|Q9P2S2-2|NRXN2	MULTI-SECPEP	A375_MHC_IP_R1	1	381.5833740234375	2	381.729064	761.443575	0.47346	0.00018073	-3.6058	-0.0013764	-3.1323	-0.0011957	381.72871277686227	40.584	0.2536	40.584	40.509	40.762	0					5	4	2	0	0	0	0.972	1	14005	14005		6.3541	0	1	429160	+		21594	17615	15668	15778	21161	21161					0.05331049531184817
ILAGITSWV	9	Unmodified	_ILAGITSWV_					0	0	0		ENSG00000187950|ENST00000537054|OVCH1;nc|ENSG00000187950|Q7RTY7|OVCH1	ENSG00000187950|ENST00000537054|OVCH1	ENSG00000187950|ENST00000537054|OVCH1	MULTI-MSMS	A375_MHC_IP_R2	2	480.7179260253906	2	480.28166	958.548768	-0.41912	-0.0002013	-1.8765	-0.00090124	-2.2956	-0.0011025	480.28047436279024	116.77	1.1159	117.43	117.17	118.29	0.65962					27	21	2	0	0	0	0.62719	1	44085	44085		13.508	4.1604	1	3178600			21595	8867	15669	15779	21162	21162					0.06783545936946211
ILAGNCWFY	9	Unmodified	_ILAGNCWFY_					0	0	0		ENST00000590311.5_1_17:67109267-67109498:-|nuORF	ENST00000590311.5_1_17:67109267-67109498:-|nuORF	ENST00000590311.5_1_17:67109267-67109498:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	543.6426391601562	2	543.757495	1085.50044	-0.58286	-0.00031693	2.1855	0.0011884	1.6027	0.00087145	543.7586656960874	73.665	0.45606	73.665	73.437	73.893	0					11	8	2	0	0	0	0.74651	1	26894	26894		13.508	9.1786	1	1252500			21596	13783	15670	15780	21163	21163					-0.03889270974605097
ILAGTALAAL	10	Unmodified	_ILAGTALAAL_					0	0	0		ENSG00000157353|ENST00000288078|FCSK;nc|ENSG00000157353|Q8N0W3-2|FCSK;ENST00000464499.5_1_16:70508533-70512710:+|nuORF;ENST00000573832.1_1_16:70508742-70509675:+|nuORF	ENSG00000157353|ENST00000288078|FCSK	ENSG00000157353|ENST00000288078|FCSK	MULTI-MSMS	A375_MHC_IP_R1	1	457.6890869140625	2	457.289485	912.564418	-0.4028	-0.0001842	0.33749	0.00015433	-0.065314	-2.9867E-05	457.2894864982527	84.112	0.60536	84.112	83.837	84.442	0					24	11	4	0	0	0	0.06683	1	30792	30792		71.134	0	1	6520100			21597	6239	15671	15781	21164	21164					0.10463832454001931
ILAGTALAAL	10	Unmodified	_ILAGTALAAL_					0	0	0		ENSG00000157353|ENST00000288078|FCSK;nc|ENSG00000157353|Q8N0W3-2|FCSK;ENST00000464499.5_1_16:70508533-70512710:+|nuORF;ENST00000573832.1_1_16:70508742-70509675:+|nuORF	ENSG00000157353|ENST00000288078|FCSK	ENSG00000157353|ENST00000288078|FCSK	MULTI-MSMS	A375_MHC_IP_R2	2	457.6890869140625	2	457.289485	912.564418	-0.27501	-0.00012576	0.025232	1.1538E-05	-0.24978	-0.00011422	457.2894344724421	83.087	0.60574	83.827	83.494	84.099	0.73962					24	11	3	0	0	0	0.097291	1	31570	31570		64.236	0	1	6032700			21598	6239	15671	15781	21165	21165					0.10463832454001931
ILAILHTVIS	10	Unmodified	_ILAILHTVIS_					0	0	0		ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;ENST00000608590.5_1_1:237955470-237994843:+|nuORF	ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-SECPEP	A375_MHC_IP_R1	1	540.688720703125	2	540.344792	1078.67503	-0.63836	-0.00034493	0.52897	0.00028583	-0.10939	-5.9107E-05	540.3452402110602	83.254	0.40877	83.254	83.125	83.533	0					12	7	2	0	0	0	0.85226	1	30553	30553		14.838	0	1	864290			21599	9292	15672	15782	21166	21166					0.13884052442222128
ILALLLFKKK	10	Unmodified	_ILALLLFKKK_					0	0	0			REV__tr|U7SLS6|U7SLS6_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02155PE=3SV=1	REV__tr|U7SLS6|U7SLS6_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02155PE=3SV=1	MSMS	A375_MHC_IP_R2	2	593.9185791015625	2	593.917927	1185.8213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.635	1	84.375	83.875	84.875	0.73962								0	0	0	0.15629	1	31788	31788		0.40072	0.40072	1		+		21600	28276	15673	15783	21167	21167					0.23582354678092088
ILALSGVSGV	10	Unmodified	_ILALSGVSGV_					0	0	0		ENSG00000171217|ENST00000367165|CLDN20	ENSG00000171217|ENST00000367165|CLDN20	ENSG00000171217|ENST00000367165|CLDN20	MULTI-SECPEP	A375_MHC_IP_R1	1	458.67938232421875	2	458.279118	914.543683	-0.17131	-7.8506E-05	0.31654	0.00014506	0.14523	6.6556E-05	458.279290096576	63.135	0.61445	63.135	62.863	63.477	0					17	11	3	0	0	0	0.38158	1	22849	22849		52.268	24.64	1	1295400			21601	7583	15674	15784	21168	21168					0.08299242074349422
ILALSGVSGV	10	Unmodified	_ILALSGVSGV_					0	0	0		ENSG00000171217|ENST00000367165|CLDN20	ENSG00000171217|ENST00000367165|CLDN20	ENSG00000171217|ENST00000367165|CLDN20	MULTI-SECPEP	A375_MHC_IP_R2	2	458.6788635253906	2	458.279118	914.543683	-0.48225	-0.000221	0.4675	0.00021425	-0.014746	-6.7579E-06	458.2793012411136	62.247	0.55772	62.989	62.673	63.23	0.74263					14	10	2	0	0	0	0.27864	1	23630	23630		41.84	1.8823	1	1279400			21602	7583	15674	15784	21169	21169					0.08299242074349422
ILANDGVLLAA	11	Unmodified	_ILANDGVLLAA_					0	0	0		ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;ENST00000560033.5_1_15:78834730-78834988:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	535.7160034179688	2	535.316232	1068.61791	-0.6294	-0.00033693	0.01333	7.1355E-06	-0.61607	-0.00032979	535.316393826184	104.88	0.45491	104.88	104.69	105.15	0					18	8	3	0	0	0	0.86796	1	38526	38526		20.415	0	1	1851900			21603	1168	15675	15785	21170	21170					0.08634585165850694
ILANPSPVL	9	Unmodified	_ILANPSPVL_					0	0	0		ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	MULTI-SECPEP	A375_MHC_IP_R2	2	462.681640625	2	462.28166	922.548768	-0.42312	-0.0001956	0.34078	0.00015753	-0.082342	-3.8065E-05	462.28175486887477	92.868	1.7246	93.607	92.836	94.56	0.73901					49	33	2	0	0	0	0.62767	1	35255	35255		16.942	3.0362	1	1869400			21604	2520	15676	15786	21171	21171					0.0843954593693752
ILAPTREL	8	Unmodified	_ILAPTREL_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000174243|ENST00000308025|DDX23	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-SECPEP	A375_MHC_IP_R2	2	457.1788635253906	2	456.779285	911.544017	-0.3417	-0.00015608	-0.40396	-0.00018452	-0.74566	-0.0003406	456.7789436357385	48.72	0.45861	49.478	49.231	49.69	0.75736					14	8	2	0	0	0	0.69122	1	18315	18315		39.957	0	1	2031400			21605	5252	15677	15787	21172	21172					0.08470661794183343
ILAPTVQEL	9	Unmodified	_ILAPTVQEL_					0	0	0		nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	MULTI-MSMS	A375_MHC_IP_R1	1	983.6397705078125	1	983.577174	982.569897	0.058618	5.7655E-05	-0.55052	-0.00054148	-0.4919	-0.00048383	983.5766586442899	94.369	0.61026	94.369	94.041	94.651	0					15	11	2	0	0	0	0.012843	1	34715	34715		92.653	31.296	1	2422000			21606	1702	15678	15788	21173	21173					0.07791511245807214
ILAPTVQEL	9	Unmodified	_ILAPTVQEL_					0	0	0		nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	MULTI-MSMS	A375_MHC_IP_R2	2	983.9786987304688	1	983.577174	982.569897	0.12976	0.00012763	0.044556	4.3824E-05	0.17431	0.00017145	983.5769887982632	93.592	0.5086	94.337	94.006	94.515	0.74474					17	9	2	0	0	0	0.032333	1	35583	35583		72.968	14.289	1	2582100			21607	1702	15678	15788	21174	21174					0.07791511245807214
ILAPTVQEL	9	Unmodified	_ILAPTVQEL_					0	0	0		nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	MULTI-SECPEP	A375_MHC_IP_R2	2	492.1474304199219	2	492.292225	982.569897	-0.38044	-0.00018729	0.048246	2.3751E-05	-0.3322	-0.00016354	492.29215795488085	93.614	0.7617	94.359	93.956	94.717	0.74473					21	14	2	0	0	0	0.20645	1	35570	35570		47.749	18.667	1	2528400			21608	1702	15678	15788	21175	21175					0.07791511245807214
ILAQDHCPA	9	Unmodified	_ILAQDHCPA_					0	0	0			REV__ENSG00000170448|ENST00000507489|NFXL1	REV__ENSG00000170448|ENST00000507489|NFXL1	MSMS	A375_MHC_IP_R1	1	484.22186279296875	2	484.236927	966.459301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.633	1	79.633	79.133	80.133	0								0	0	0	0.15486	1	29070	29070		12.532	2.3482	1		+		21609	20993	15679	15789	21176	21176					-0.025270320140975855
ILAQEIHDV	9	Unmodified	_ILAQEIHDV_					0	0	0		nc|ENSG00000099814|Q9Y4F5-3|CEP170B;ENSG00000099814|ENST00000414716|CEP170B;nc|ENSG00000099814|Q9Y4F5|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	MULTI-SECPEP	A375_MHC_IP_R1	1	519.6847534179688	2	519.284931	1036.55531	-0.62696	-0.00032557	0.35875	0.00018629	-0.26821	-0.00013928	519.2851627681218	52.617	0.55952	52.617	52.387	52.946	0					20	10	3	0	0	0	0.63622	1	18747	18747		24.991	17.081	1	5474400			21610	2085	15680	15790	21177	21177					0.03849439097643881
ILAQEIHDV	9	Unmodified	_ILAQEIHDV_					0	0	0		nc|ENSG00000099814|Q9Y4F5-3|CEP170B;ENSG00000099814|ENST00000414716|CEP170B;nc|ENSG00000099814|Q9Y4F5|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1686401367188	2	519.284931	1036.55531	-0.98157	-0.00050971	0.20813	0.00010808	-0.77343	-0.00040163	519.2850403889231	51.913	0.71191	52.665	52.321	53.032	0.75225					20	8	3	0	0	0	0.28216	1	19493	19493		49.933	28.186	1	5894900			21611	2085	15680	15790	21178	21178					0.03849439097643881
ILAQEIVKA	9	Unmodified	_ILAQEIVKA_					0	0	0		ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	MULTI-MSMS	A375_MHC_IP_R1	1	493.2076416015625	2	492.808042	983.601532	-0.21651	-0.0001067	0.040664	2.004E-05	-0.17584	-8.6657E-05	492.80792194486924	56.372	0.66074	56.372	56.143	56.804	0					28	12	3	0	0	0	0.012447	2	20190	20190;20261		93.166	30.593	1	5291600			21612	5298	15681	15791	21179;21180	21179					0.10907503999749224
ILAQEIVKA	9	Unmodified	_ILAQEIVKA_					0	0	0		ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	MULTI-SECPEP	A375_MHC_IP_R2	2	493.1203308105469	2	492.808042	983.601532	-0.58526	-0.00028842	0.32065	0.00015802	-0.26461	-0.0001304	492.8080236424443	55.557	0.50629	56.308	56.034	56.54	0.75075					26	9	4	0	0	0	0.048303	1	20956	20956		83.429	29.596	1	7796500			21613	5298	15681	15791	21181	21181					0.10907503999749224
ILAQVGFSV	9	Unmodified	_ILAQVGFSV_					0	0	0		ENSG00000072041|ENST00000266682|SLC6A15;nc|ENSG00000072041|Q9H2J7-2|SLC6A15	ENSG00000072041|ENST00000266682|SLC6A15	ENSG00000072041|ENST00000266682|SLC6A15	MULTI-MSMS	A375_MHC_IP_R1	1	467.6923522949219	2	467.273835	932.533118	-0.039297	-1.8362E-05	0.017957	8.3907E-06	-0.02134	-9.9716E-06	467.2737798326049	107.42	0.51097	107.42	107.24	107.75	0					11	9	2	0	0	0	0.35581	1	39439	39439		26.884	0.54238	1	1388800			21614	1525	15682	15792	21182	21182					0.06415259419907215
ILASIFETV	9	Unmodified	_ILASIFETV_					0	0	0		ENSG00000144136|ENST00000272542|SLC20A1;SLC20A1|p.V336Rfs*11|1|0.23|ENSG00000144136|chr2:112659050-112659051|-/C|frameshift_variant	ENSG00000144136|ENST00000272542|SLC20A1	ENSG00000144136|ENST00000272542|SLC20A1	MULTI-MSMS	A375_MHC_IP_R2	2	497.1867980957031	2	496.786776	991.558998	-0.53958	-0.00026806	0.21972	0.00010915	-0.31987	-0.00015891	496.7868486641063	127.93	0.50808	128.2	128.07	128.58	0.26592					16	9	3	0	0	0	0.0084242	1	50223	50223		170.55	60.922	1	18702000			21615	5466	15683	15793	21183	21183					0.06288108871513032
ILASIFETV	9	Unmodified	_ILASIFETV_					0	0	0		ENSG00000144136|ENST00000272542|SLC20A1;SLC20A1|p.V336Rfs*11|1|0.23|ENSG00000144136|chr2:112659050-112659051|-/C|frameshift_variant	ENSG00000144136|ENST00000272542|SLC20A1	ENSG00000144136|ENST00000272542|SLC20A1	MULTI-SECPEP	A375_MHC_IP_R2	2	992.3546752929688	1	992.566275	991.558998	-0.053244	-5.2849E-05	0.85408	0.00084773	0.80084	0.00079488	992.5668873048342	127.93	0.35482	128.2	128.07	128.42	0.26592					11	6	2	0	0	0	0.010931	1	50295	50295		139.54	72.2	1	27509000			21616	5466	15683	15793	21184	21184					0.06288108871513032
ILASIFETV	9	Unmodified	_ILASIFETV_					0	0	0		ENSG00000144136|ENST00000272542|SLC20A1;SLC20A1|p.V336Rfs*11|1|0.23|ENSG00000144136|chr2:112659050-112659051|-/C|frameshift_variant	ENSG00000144136|ENST00000272542|SLC20A1	ENSG00000144136|ENST00000272542|SLC20A1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	496.786776	991.558998	-0.24293	-0.00012068	-0.34285	-0.00017033	-0.58578	-0.00029101	496.7866676973233	128.28	0.30502	128.28	128.13	128.43	0	0.040067	-0.0005271	NaN	170.55	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13417000			21617	5466	15683	15793							0.06288108871513032
ILATAHGI	8	Unmodified	_ILATAHGI_					0	0	0			REV__ENSG00000099822|ENST00000251287|HCN2;REV__ENSG00000138622|ENST00000261917|HCN4;REV__ENSG00000143630|ENST00000368358|HCN3	REV__ENSG00000099822|ENST00000251287|HCN2	MULTI-SECPEP	A375_MHC_IP_R1	1	397.5877380371094	2	398.239796	794.465038	-0.20084	-7.9983E-05	-0.1387	-5.5237E-05	-0.33954	-0.00013522	398.23959988961155	28.352	0.45354	28.352	28.088	28.541	0					14	8	2	0	0	0	0.85124	1	8804	8804		26.341	0	1	2127300	+		21618	17026;19104;19376	15684	15794	21185	21185					0.05958434559909165
ILATVLDAIN	10	Unmodified	_ILATVLDAIN_					0	0	0			REV__ENSG00000091138|ENST00000340010|SLC26A3	REV__ENSG00000091138|ENST00000340010|SLC26A3	MSMS	A375_MHC_IP_R2	2	521.85107421875	2	521.810782	1041.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.601	1	88.333	87.833	88.833	0.7318								0	0	0	0.15451	1	33319	33319		6.2058	0.47393	1		+		21619	16945	15685	15795	21186	21186					0.0878718279154782
ILCDLFITL	9	Unmodified	_ILCDLFITL_					0	0	0			REV__ENSG00000279012|ENST00000624187|OR51B2	REV__ENSG00000279012|ENST00000624187|OR51B2	MULTI-MSMS	A375_MHC_IP_R2	2	526.714111328125	2	525.798829	1049.5831	-0.31006	-0.00016303	0.90156	0.00047404	0.59149	0.00031101	525.799821524956	110.31	0.51115	111.04	110.83	111.34	0.73692					18	9	3	0	0	0	0.40079	1	41713	41713		24.674	0	1	1498900	+		21620	22985	15686	15796	21187	21187					0.06029626033546265
ILDAGGHNV	9	Unmodified	_ILDAGGHNV_					0	0	0		ENSG00000173692|ENST00000308696|PSMD1;nc|ENSG00000173692|Q99460-2|PSMD1	ENSG00000173692|ENST00000308696|PSMD1	ENSG00000173692|ENST00000308696|PSMD1	MULTI-MSMS	A375_MHC_IP_R2	2	448.2833557128906	2	448.235242	894.45593	-0.62772	-0.00028136	0.18044	8.0878E-05	-0.44728	-0.00020049	448.2353182494936	29.936	0.71051	30.635	30.434	31.145	0.69872					26	13	3	0	0	0	0.10411	1	10463	10463		49.933	5.526	1	9701200			21621	7821	15687	15797	21188	21188					0.004480412035718473
ILDAQTAFV	9	Unmodified	_ILDAQTAFV_					0	0	0		nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	MULTI-MSMS	A375_MHC_IP_R1	1	489.6686706542969	2	489.26875	976.522947	-0.23631	-0.00011562	0.070898	3.4688E-05	-0.16541	-8.0929E-05	489.26873757022355	96.501	0.81315	96.501	96.223	97.036	0					22	15	2	0	0	0	0.17338	1	35468	35468		39.95	3.8227	1	1861600			21622	2431	15688	15798	21189	21189					0.03374651694662134
ILDAQTAFV	9	Unmodified	_ILDAQTAFV_					0	0	0		nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	MULTI-MSMS	A375_MHC_IP_R2	2	489.6690368652344	2	489.26875	976.522947	-0.45781	-0.00022399	0.17989	8.8016E-05	-0.27792	-0.00013598	489.2687928587772	95.788	0.76189	96.539	96.195	96.957	0.75045					20	14	2	0	0	0	0.11629	1	36379	36379		47.749	3.8904	1	2074800			21623	2431	15688	15798	21190	21190					0.03374651694662134
ILDCRLSQSDP	11	Unmodified	_ILDCRLSQSDP_					0	0	0			REV__ENSG00000143624|ENST00000318967|INTS3	REV__ENSG00000143624|ENST00000318967|INTS3	MULTI-SECPEP	A375_MHC_IP_R1	1	416.6501159667969	3	416.208055	1245.60234	0.63774	0.00026543	0.65233	0.0002715	1.2901	0.00053694	416.20839127571975	45.332	0.40211	45.332	45.132	45.534	0					11	7	2	0	0	0	0.98591	1	15917	15917		4.7159	0	1	1366300	+		21624	19374	15689	15799	21191	21191					-0.010640694134963269
ILDCWSDVFIW	11	Unmodified	_ILDCWSDVFIW_					0	0	0		FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	465.6922912597656	3	466.225046	1395.65331	-0.29214	-0.0001362	-0.56367	-0.0002628	-0.85581	-0.000399	466.2248617221789	77.209	0.55757	77.209	76.878	77.436	0					19	10	3	0	0	0	0.99151	1	28147	28147		11.518	8.6746	1	1155000			21625	8107	15690	15800	21192	21192					-0.028691203686321387
ILDCWSDVFIW	11	Unmodified	_ILDCWSDVFIW_					0	0	0		FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	466.225046	1395.65331	-0.64119	-0.00029894	0.3311	0.00015437	-0.31009	-0.00014457	466.2251506334613	76.477	0.35564	77.218	77.095	77.451	0.74052	0.0045217	0.0009071	NaN	11.518	16	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1140500			21626	8107	15690	15800							-0.028691203686321387
ILDDHISHY	9	Unmodified	_ILDDHISHY_					0	0	0		ENSG00000106484|ENST00000223215|MEST;nc|ENSG00000106484|Q5EB52-3|MEST;nc|ENSG00000106484|Q5EB52-2|MEST	ENSG00000106484|ENST00000223215|MEST	ENSG00000106484|ENST00000223215|MEST	MULTI-SECPEP	A375_MHC_IP_R1	1	371.2681884765625	3	371.517218	1111.52982	0.33338	0.00012386	0.2385	8.8608E-05	0.57188	0.00021246	371.5172584228501	37.723	0.40732	37.723	37.505	37.913	0					18	7	3	0	0	0	0.79191	1	12712	12712		7.1017	4.1065	1	3030000			21627	2695	15691	15801	21193	21193					-0.02148035424761474
ILDDHISHY	9	Unmodified	_ILDDHISHY_					0	0	0		ENSG00000106484|ENST00000223215|MEST;nc|ENSG00000106484|Q5EB52-3|MEST;nc|ENSG00000106484|Q5EB52-2|MEST	ENSG00000106484|ENST00000223215|MEST	ENSG00000106484|ENST00000223215|MEST	MULTI-SECPEP	A375_MHC_IP_R2	2	371.2926330566406	3	371.517218	1111.52982	-0.21198	-7.8756E-05	0.43535	0.00016174	0.22337	8.2985E-05	371.51734749148187	36.939	0.45559	37.71	37.513	37.968	0.7709					18	8	4	0	0	0	0.80516	1	13535	13535		4.5289	3.902	1	2815600			21628	2695	15691	15801	21194	21194					-0.02148035424761474
ILDDIGHGV	9	Unmodified	_ILDDIGHGV_					0	0	0		ENST00000376135.5_1_2:204193204-204247972:+|nuORF;ABI2|p.P215Wfs*9|1|0.09|ENSG00000138443|chr2:203394762-203394780|TACCTAGCCCAACCCGTAA/-|frameshift_variant;nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2	ENST00000376135.5_1_2:204193204-204247972:+|nuORF	ENST00000376135.5_1_2:204193204-204247972:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	470.1507263183594	2	469.750724	937.486896	-0.38208	-0.00017948	0.09798	4.6026E-05	-0.2841	-0.00013346	469.7506776487672	59.117	0.91576	59.117	58.836	59.752	0					37	17	3	0	0	0	0.03497	1	21220	21220		70.716	24.695	1	15019000			21629	21	15692	15802	21195	21195					0.015651945178206006
ILDDIGHGV	9	Unmodified	_ILDDIGHGV_					0	0	0		ENST00000376135.5_1_2:204193204-204247972:+|nuORF;ABI2|p.P215Wfs*9|1|0.09|ENSG00000138443|chr2:203394762-203394780|TACCTAGCCCAACCCGTAA/-|frameshift_variant;nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2	ENST00000376135.5_1_2:204193204-204247972:+|nuORF	ENST00000376135.5_1_2:204193204-204247972:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	470.1502685546875	2	469.750724	937.486896	-0.91368	-0.0004292	0.11895	5.5877E-05	-0.79473	-0.00037333	469.75074714969037	58.36	1.119	59.109	58.829	59.948	0.74894					38	21	3	0	0	0	0.03497	2	22042	21996;22042		70.716	24.695	1	19222000			21630	21	15692	15802	21196;21197	21197					0.015651945178206006
ILDDMENF	8	Unmodified	_ILDDMENF_					0	0	0			REV__nc|ENSG00000292277|Q9UJ98-2|STAG3	REV__nc|ENSG00000292277|Q9UJ98-2|STAG3	MSMS	A375_MHC_IP_R2	2	498.6203308105469	2	498.720775	995.426998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.683	1	56.434	55.934	56.934	0.75051								0	0	0	0.16876	1	21039	21039		13.508	0.97634	1		+		21631	27563	15693	15803	21198	21198					-0.07089864207728169
ILDDQTNKL	9	Unmodified	_ILDDQTNKL_					0	0	0		nc|ENSG00000153071|P98082-2|DAB2;nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2;ENST00000483232.6_1_5:39342295-39388936:-|nuORF;ENST00000505968.1_1_5:39388391-39388936:-|nuORF;ENST00000512525.5_1_5:39385512-39390599:-|nuORF	nc|ENSG00000153071|P98082-2|DAB2	nc|ENSG00000153071|P98082-2|DAB2	MULTI-SECPEP	A375_MHC_IP_R1	1	530.6873168945312	2	530.287671	1058.56079	-0.66996	-0.00035527	-0.89168	-0.00047285	-1.5616	-0.00082812	530.2873206765858	40.928	0.50412	40.928	40.66	41.164	0					16	9	3	0	0	0	0.049608	1	14117	14117		84.522	19.287	1	2253100			21632	6004	15694	15804	21199	21199					0.03385117889479261
ILDDQTNKL	9	Unmodified	_ILDDQTNKL_					0	0	0		nc|ENSG00000153071|P98082-2|DAB2;nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2;ENST00000483232.6_1_5:39342295-39388936:-|nuORF;ENST00000505968.1_1_5:39388391-39388936:-|nuORF;ENST00000512525.5_1_5:39385512-39390599:-|nuORF	nc|ENSG00000153071|P98082-2|DAB2	nc|ENSG00000153071|P98082-2|DAB2	MULTI-SECPEP	A375_MHC_IP_R2	2	530.6870727539062	2	530.287671	1058.56079	-0.66085	-0.00035044	-0.23864	-0.00012655	-0.89948	-0.00047699	530.2874726873099	40.216	0.45647	40.991	40.777	41.234	0.77451					12	8	2	0	0	0	0.34746	1	14897	14897		45.7	19.431	1	3287700			21633	6004	15694	15804	21200	21200					0.03385117889479261
ILDDSHLLV	9	Unmodified	_ILDDSHLLV_					0	0	0		ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	A375_MHC_IP_R1	1	512.6950073242188	2	512.787307	1023.56006	-0.67899	-0.00034818	-0.0019292	-9.8925E-07	-0.68092	-0.00034917	512.7872984022011	86.401	1.8261	86.401	86.022	87.848	0					60	35	3	0	0	0	0.0093345	1	31741	31741		104.8	56.453	1	21384000			21634	1066	15695	15805	21201	21201					0.0492232324043016
ILDDSHLLV	9	Unmodified	_ILDDSHLLV_					0	0	0		ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	A375_MHC_IP_R2	2	512.6951293945312	2	512.787307	1023.56006	-0.58948	-0.00030228	-0.12756	-6.5413E-05	-0.71704	-0.00036769	512.7871959123742	85.528	1.426	86.264	85.984	87.41	0.73601					49	27	4	0	0	0	0.0093345	2	32565	32478;32565		104.8	56.453	1	21588000			21635	1066	15695	15805	21202;21203	21203					0.0492232324043016
ILDDTAKNLRV	11	Unmodified	_ILDDTAKNLRV_					0	0	0		MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-4|MIA3	MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant	MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	630.2633056640625	2	629.361702	1256.70885	-0.17492	-0.00011009	-0.32682	-0.00020569	-0.50175	-0.00031578	629.3615938089065	48.734	0.35545	48.734	48.526	48.882	0					11	6	2	0	0	0	0.72728	1	17231	17231		11.495	5.2889	1	2854800			21636	6080	15696	15806	21204	21204					0.09076429143306086
ILDDTAKNLRV	11	Unmodified	_ILDDTAKNLRV_					0	0	0		MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-4|MIA3	MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant	MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	420.31011962890625	3	419.910227	1256.70885	0.53437	0.00022439	-0.61074	-0.00025646	-0.076377	-3.2071E-05	419.9099427153336	48.755	0.65746	48.755	48.476	49.134	0					29	12	4	0	0	0	0.10294	1	17179	17179		80.24	55.282	1	14378000			21637	6080	15696	15806	21205	21205					0.09076429143306086
ILDDTAKNLRV	11	Unmodified	_ILDDTAKNLRV_					0	0	0		MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-4|MIA3	MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant	MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	629.7603759765625	2	629.361702	1256.70885	-0.69986	-0.00044047	-0.80473	-0.00050647	-1.5046	-0.00094693	629.3612337611806	47.895	0.30281	48.656	48.48	48.783	0.76128					9	5	2	0	0	0	0.50535	1	18010	18010		30.703	12.33	1	2212900			21638	6080	15696	15806	21206	21206					0.09076429143306086
ILDDTAKNLRV	11	Unmodified	_ILDDTAKNLRV_					0	0	0		MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-4|MIA3	MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant	MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	420.3099060058594	3	419.910227	1256.70885	0.027825	1.1684E-05	-0.58826	-0.00024702	-0.56044	-0.00023533	419.90997310823434	47.897	0.55506	48.658	48.378	48.933	0.76128					29	10	4	0	0	0	0.33997	1	17954	17954		60.943	37.928	1	14208000			21639	6080	15696	15806	21207	21207					0.09076429143306086
ILDEAIYKV	9	Unmodified	_ILDEAIYKV_					0	0	0		nc|ENSG00000166578|Q96DY2-2|IQCD;ENSG00000166578|ENST00000416617|IQCD	nc|ENSG00000166578|Q96DY2-2|IQCD	nc|ENSG00000166578|Q96DY2-2|IQCD	MULTI-MSMS	A375_MHC_IP_R1	1	532.7052612304688	2	532.305332	1062.59611	-0.63103	-0.0003359	-0.078817	-4.1954E-05	-0.70984	-0.00037785	532.3054737563718	73.462	0.70895	73.462	73.184	73.893	0					29	13	3	0	0	0	0.020087	1	26752	26752		83.429	37.729	1	5371700			21640	7092	15697	15807	21208	21208					0.06731780417271693
ILDEAIYKV	9	Unmodified	_ILDEAIYKV_					0	0	0		nc|ENSG00000166578|Q96DY2-2|IQCD;ENSG00000166578|ENST00000416617|IQCD	nc|ENSG00000166578|Q96DY2-2|IQCD	nc|ENSG00000166578|Q96DY2-2|IQCD	MULTI-SECPEP	A375_MHC_IP_R2	2	532.7046508789062	2	532.305332	1062.59611	-0.76212	-0.00040568	-0.51363	-0.00027341	-1.2758	-0.00067909	532.3051030633106	72.753	0.76349	73.488	73.175	73.938	0.7354					28	14	3	0	0	0	0.05217	1	27600	27600		70.332	26.56	1	6180600			21641	7092	15697	15807	21209	21209					0.06731780417271693
ILDEEKFNV	9	Unmodified	_ILDEEKFNV_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-SECPEP	A375_MHC_IP_R1	1	554.1903076171875	2	553.790047	1105.56554	-0.70328	-0.00038947	0.70506	0.00039046	0.0017783	9.8481E-07	553.7903673009378	65.896	0.65868	65.896	65.616	66.275	0					27	12	3	0	0	0	0.010874	1	23841	23841		125.53	67.807	1	8237100			21642	3579	15698	15808	21210	21210					0.01698002032230761
ILDEEKFNV	9	Unmodified	_ILDEEKFNV_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-SECPEP	A375_MHC_IP_R2	2	554.189453125	2	553.790047	1105.56554	-0.84955	-0.00047047	-0.10138	-5.6145E-05	-0.95093	-0.00052661	553.7900688119347	65.15	0.66023	65.888	65.613	66.273	0.73812					29	12	3	0	0	0	0.011236	1	24671	24671		106.94	63.168	1	7236500			21643	3579	15698	15808	21211	21211					0.01698002032230761
ILDEFLQTY	9	Unmodified	_ILDEFLQTY_					0	0	0		ENSG00000161956|ENST00000321337|SENP3;ENST00000580997.1_1_17:7468099-7469096:+|nuORF;ENST00000583277.1_1_17:7467715-7468388:+|nuORF	ENSG00000161956|ENST00000321337|SENP3	ENSG00000161956|ENST00000321337|SENP3	MULTI-MSMS	A375_MHC_IP_R1	1	571.6915283203125	2	571.292422	1140.57029	-0.75601	-0.0004319	-0.79463	-0.00045397	-1.5506	-0.00088587	571.2919625889197	124.04	0.60378	124.04	123.84	124.44	0					17	11	3	0	0	0	0.020087	1	46550	46550		103.75	63.791	1	15048000			21644	6497	15699	15809	21212	21212					0.005628861749983116
ILDEFLQTY	9	Unmodified	_ILDEFLQTY_					0	0	0		ENSG00000161956|ENST00000321337|SENP3;ENST00000580997.1_1_17:7468099-7469096:+|nuORF;ENST00000583277.1_1_17:7467715-7468388:+|nuORF	ENSG00000161956|ENST00000321337|SENP3	ENSG00000161956|ENST00000321337|SENP3	MULTI-MSMS	A375_MHC_IP_R2	2	571.6924438476562	2	571.292422	1140.57029	-0.28177	-0.00016097	-0.38136	-0.00021787	-0.66312	-0.00037884	571.2920698944419	123.44	0.75717	123.81	123.48	124.24	0.37661					24	14	2	0	0	0	0.012447	1	47418	47418		115.69	61.859	1	20652000			21645	6497	15699	15809	21213	21213					0.005628861749983116
ILDEHVQRV	9	Unmodified	_ILDEHVQRV_					0	0	0		ENSG00000103126|ENST00000262320|AXIN1;nc|ENSG00000103126|O15169-2|AXIN1;ENST00000461023.5_1_16:343426-396314:-|nuORF	ENSG00000103126|ENST00000262320|AXIN1	ENSG00000103126|ENST00000262320|AXIN1	MULTI-MSMS	A375_MHC_IP_R1	1	370.6085205078125	3	370.208495	1107.60366	-0.14332	-5.306E-05	0.44155	0.00016346	0.29822	0.00011041	370.20862030012705	29.425	0.547	29.425	29.201	29.748	0					21	10	4	0	0	0	0.047602	1	9188	9188		51.415	9.4597	1	113320000			21646	2421	15700	15810	21214	21214					0.0541593273756007
ILDEHVQRV	9	Unmodified	_ILDEHVQRV_					0	0	0		ENSG00000103126|ENST00000262320|AXIN1;nc|ENSG00000103126|O15169-2|AXIN1;ENST00000461023.5_1_16:343426-396314:-|nuORF	ENSG00000103126|ENST00000262320|AXIN1	ENSG00000103126|ENST00000262320|AXIN1	MULTI-SECPEP	A375_MHC_IP_R1	1	555.2091674804688	2	554.809105	1107.60366	-1.0084	-0.00055949	0.5982	0.00033189	-0.41023	-0.0002276	554.8092857465651	29.428	0.30347	29.428	29.252	29.555	0					6	5	2	0	0	0	0.53783	1	9222	9222		36.506	20.659	1	11094000			21647	2421	15700	15810	21215	21215					0.0541593273756007
ILDEHVQRV	9	Unmodified	_ILDEHVQRV_					0	0	0		ENSG00000103126|ENST00000262320|AXIN1;nc|ENSG00000103126|O15169-2|AXIN1;ENST00000461023.5_1_16:343426-396314:-|nuORF	ENSG00000103126|ENST00000262320|AXIN1	ENSG00000103126|ENST00000262320|AXIN1	MULTI-MSMS	A375_MHC_IP_R2	2	370.6082763671875	3	370.208495	1107.60366	-0.27784	-0.00010286	-0.15982	-5.9166E-05	-0.43766	-0.00016203	370.20843440578466	28.643	0.60107	29.341	29.08	29.681	0.69872					22	11	3	0	0	0	0.14922	1	9912	9912		38.615	0	1	87119000			21648	2421	15700	15810	21216	21216					0.0541593273756007
ILDEMSHKLRL	11	Unmodified	_ILDEMSHKLRL_					0	0	0		ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	MULTI-MSMS	A375_MHC_IP_R1	1	452.6551208496094	3	452.255228	1353.74386	-0.18257	-8.2568E-05	-0.26969	-0.00012197	-0.45226	-0.00020454	452.2551856481542	59.439	0.60892	59.439	59.143	59.752	0					21	11	3	0	0	0	0.4959	1	21378	21378		31.446	11.459	1	3926200			21649	3443	15701	15811	21217	21217					0.08113348679626142
ILDEMSHKLRL	11	Unmodified	_ILDEMSHKLRL_					0	0	0		ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	MULTI-MSMS	A375_MHC_IP_R2	2	452.65478515625	3	452.255228	1353.74386	-0.57826	-0.00026152	-0.47215	-0.00021353	-1.0504	-0.00047505	452.25518667582435	58.479	0.6122	59.228	58.98	59.592	0.74895					28	11	4	0	0	0	0.44059	1	22126	22126		35.793	15.806	1	3629800			21650	3443	15701	15811	21218	21218					0.08113348679626142
ILDENSQKY	9	Unmodified	_ILDENSQKY_					0	0	0		nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-2|DOCK4;ENST00000476846.1_7:111503332-111846439:-|nuORF;ENST00000492532.1_7:111509614-111512393:-|nuORF	nc|ENSG00000128512|Q8N1I0|DOCK4	nc|ENSG00000128512|Q8N1I0|DOCK4	MULTI-SECPEP	A375_MHC_IP_R1	1	554.6926879882812	2	555.277303	1108.54005	-0.90369	-0.0005018	0.12882	7.1528E-05	-0.77487	-0.00043027	555.2772376671603	29.937	0.50276	29.937	29.748	30.251	0					16	9	2	0	0	0	0.0095758	1	9458	9458		139.78	83.605	1	20407000			21651	4139	15702	15812	21219	21219					-0.009874724901692389
ILDENSQKY	9	Unmodified	_ILDENSQKY_					0	0	0		nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-2|DOCK4;ENST00000476846.1_7:111503332-111846439:-|nuORF;ENST00000492532.1_7:111509614-111512393:-|nuORF	nc|ENSG00000128512|Q8N1I0|DOCK4	nc|ENSG00000128512|Q8N1I0|DOCK4	MULTI-SECPEP	A375_MHC_IP_R2	2	555.6763916015625	2	555.277303	1108.54005	-1.6078	-0.0008928	0.64321	0.00035716	-0.96463	-0.00053564	555.2774653804622	29.313	0.50526	30.011	29.83	30.335	0.69872					20	9	3	0	0	0	0.013536	1	10226	10226		121.35	56.111	1	20325000			21652	4139	15702	15812	21220	21220					-0.009874724901692389
ILDEPTNNL	9	Unmodified	_ILDEPTNNL_					0	0	0		nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1;tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1	nc|ENSG00000204574|Q8NE71-2|ABCF1;tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1	nc|ENSG00000204574|Q8NE71-2|ABCF1	MULTI-MSMS	A375_MHC_IP_R1	1	515.1661987304688	2	514.766571	1027.51859	-0.71547	-0.0003683	0.2096	0.0001079	-0.50587	-0.0002604	514.7664838087576	66.403	0.61148	66.403	66.173	66.785	0					29	11	3	0	0	0	0.0090297	1	24049	24049		99.755	57.916	1	5672500			21653	9458;29401	15703	15813	21221	21221					0.005931424811024044
ILDEPTNNL	9	Unmodified	_ILDEPTNNL_					0	0	0		nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1;tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1	nc|ENSG00000204574|Q8NE71-2|ABCF1;tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1	nc|ENSG00000204574|Q8NE71-2|ABCF1	MULTI-SECPEP	A375_MHC_IP_R2	2	515.166259765625	2	514.766571	1027.51859	-0.95517	-0.00049169	-0.27209	-0.00014007	-1.2273	-0.00063176	514.7663419119193	65.726	1.0187	66.464	66.018	67.037	0.73812					37	18	3	0	0	0	0.04395	1	24917	24917		92.491	48.633	1	6149300			21654	9458;29401	15703	15813	21222	21222					0.005931424811024044
ILDERHDNY	9	Unmodified	_ILDERHDNY_					0	0	0		ENSG00000023287|ENST00000025008|RB1CC1;nc|ENSG00000023287|Q8TDY2-2|RB1CC1;ENST00000522957.1_1_8:53536344-53555381:-|nuORF	ENSG00000023287|ENST00000025008|RB1CC1	ENSG00000023287|ENST00000025008|RB1CC1	MULTI-MSMS	A375_MHC_IP_R1	1	588.1777954101562	2	587.778002	1173.54145	-0.35349	-0.00020777	-0.11513	-6.7673E-05	-0.46862	-0.00027544	587.7776794085279	24.723	0.45567	24.723	24.597	25.053	0					16	8	3	0	0	0	0.029287	1	7097	7097		75.571	39.444	1	9555200			21655	1075	15704	15814	21223	21223					-0.038378384014322364
ILDERHDNY	9	Unmodified	_ILDERHDNY_					0	0	0		ENSG00000023287|ENST00000025008|RB1CC1;nc|ENSG00000023287|Q8TDY2-2|RB1CC1;ENST00000522957.1_1_8:53536344-53555381:-|nuORF	ENSG00000023287|ENST00000025008|RB1CC1	ENSG00000023287|ENST00000025008|RB1CC1	MULTI-SECPEP	A375_MHC_IP_R1	1	392.58770751953125	3	392.18776	1173.54145	0.060318	2.3656E-05	-0.090793	-3.5608E-05	-0.030475	-1.1952E-05	392.187792772768	24.723	0.50548	24.723	24.547	25.053	0					24	9	3	0	0	0	0.32966	1	7086	7086		42.312	42.312	1	33743000			21656	1075	15704	15814	21224	21224					-0.038378384014322364
ILDERHDNY	9	Unmodified	_ILDERHDNY_					0	0	0		ENSG00000023287|ENST00000025008|RB1CC1;nc|ENSG00000023287|Q8TDY2-2|RB1CC1;ENST00000522957.1_1_8:53536344-53555381:-|nuORF	ENSG00000023287|ENST00000025008|RB1CC1	ENSG00000023287|ENST00000025008|RB1CC1	MULTI-SECPEP	A375_MHC_IP_R2	2	392.5875244140625	3	392.18776	1173.54145	-0.46773	-0.00018344	-0.058351	-2.2884E-05	-0.52608	-0.00020632	392.18767332484714	24.137	0.61001	24.781	24.653	25.263	0.64368					27	11	4	0	0	0	0.47206	1	7886	7886		39.213	39.213	1	25217000			21657	1075	15704	15814	21225	21225					-0.038378384014322364
ILDESHERV	9	Unmodified	_ILDESHERV_					0	0	0		ENSG00000128534|ENST00000249299|LSM8	ENSG00000128534|ENST00000249299|LSM8	ENSG00000128534|ENST00000249299|LSM8	MULTI-SECPEP	A375_MHC_IP_R2	2	366.9268493652344	3	366.524372	1096.55129	-0.19046	-6.9808E-05	0.84503	0.00030973	0.65457	0.00023992	366.5248358102019	24.34	0.35523	24.983	24.806	25.161	0.64368					15	6	4	0	0	0	0.056023	1	7977	7977		69.338	35.893	1	25925000			21658	4143	15705	15815	21226	21226					0.006873496039588645
ILDETVNSV	9	Unmodified	_ILDETVNSV_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MULTI-MSMS	A375_MHC_IP_R1	1	495.69696044921875	2	495.261122	988.507691	-0.34586	-0.00017129	-0.37736	-0.00018689	-0.72322	-0.00035818	495.26092744440996	63.606	1.577	63.606	63.223	64.8	0					52	30	3	0	0	0	0.009271	1	23033	23033		103.75	3.9493	1	13894000			21659	4852	15706	15816	21227	21227					0.012977401068155814
ILDEVIMGY	9	Oxidation (M)	_ILDEVIM(Oxidation (M))GY_		ILDEVIM(1)GY		ILDEVIM(42)GY	0	0	1		ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-MSMS	A375_MHC_IP_R1	1	534.7483520507812	2	534.767726	1067.5209	-0.64101	-0.00034279	0.14873	7.9537E-05	-0.49227	-0.00026325	534.7678802544715	102.59	2.1824	102.59	101.9	104.08	0					67	42	2	0	0	0	0.1478	1	37931	37931		42.095	13.608	1	2072500			21660	4966	15707	15817	21228	21228		263			-0.010161451054500503
ILDEVIMGY	9	Oxidation (M)	_ILDEVIM(Oxidation (M))GY_		ILDEVIM(1)GY		ILDEVIM(85)GY	0	0	1		ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-SECPEP	A375_MHC_IP_R1	1	535.1675415039062	2	534.767726	1067.5209	-0.69596	-0.00037218	-0.20446	-0.00010934	-0.90042	-0.00048152	534.7676045998433	99.402	1.3135	99.402	98.864	100.18	0					50	25	4	0	0	0	0.050875	1	36469	36469		85.357	30.583	1	7791700			21661	4966	15707	15817	21229	21229		263			-0.010161451054500503
ILDEVIMGY	9	Oxidation (M)	_ILDEVIM(Oxidation (M))GY_		ILDEVIM(1)GY		ILDEVIM(100)GY	0	0	1		ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-MSMS	A375_MHC_IP_R2	2	535.2887573242188	2	534.767726	1067.5209	-0.70061	-0.00037466	0.041372	2.2125E-05	-0.65924	-0.00035254	534.7677470284913	98.771	1.0673	99.53	99.15	100.22	0.75977					43	20	3	0	0	0	0.0093345	2	37534	37474;37534		125.62	54.909	1	8564700			21662	4966	15707	15817	21230;21231	21231		263			-0.010161451054500503
ILDEVVHESEG	11	Unmodified	_ILDEVVHESEG_					0	0	0			REV__MME|p.K437E|1|0.31|ENSG00000196549|chr3:155143563-155143563|A/G|missense_variant	REV__MME|p.K437E|1|0.31|ENSG00000196549|chr3:155143563-155143563|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	614.197998046875	2	613.7986	1225.58265	0.049235	3.022E-05	-0.56331	-0.00034576	-0.51407	-0.00031554	613.7981439518411	48.419	1.2651	48.419	47.97	49.235	0					34	24	2	0	0	0	0.52598	1	17047	17047		29.082	1.4528	1	9457400	+		21663	27021	15708	15818	21232	21232					-0.021121221526072986
ILDEVVHESEG	11	Unmodified	_ILDEVVHESEG_					0	0	0			REV__MME|p.K437E|1|0.31|ENSG00000196549|chr3:155143563-155143563|A/G|missense_variant	REV__MME|p.K437E|1|0.31|ENSG00000196549|chr3:155143563-155143563|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	614.197998046875	2	613.7986	1225.58265	0.049235	3.022E-05	-0.56331	-0.00034576	-0.51407	-0.00031554	613.7981439518411	48.419	1.2651	48.419	47.97	49.235	0					34	24	2	0	0	0	0.82225	1	17047	17047		29.082	1.4528	1	9457400	+		21664	27021	15708	15818	21233	21233					-0.021121221526072986
ILDEVVHESEG	11	Unmodified	_ILDEVVHESEG_					0	0	0			REV__MME|p.K437E|1|0.31|ENSG00000196549|chr3:155143563-155143563|A/G|missense_variant	REV__MME|p.K437E|1|0.31|ENSG00000196549|chr3:155143563-155143563|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	614.1973876953125	2	613.7986	1225.58265	-0.4489	-0.00027554	-0.52257	-0.00032075	-0.97147	-0.00059629	613.7981062298852	47.745	1.112	48.506	48.174	49.286	0.76128					35	21	2	0	0	0	0.4583	1	17892	17892		34.402	6.7729	1	7769600	+		21665	27021	15708	15818	21234	21234					-0.021121221526072986
ILDGKRIQY	9	Unmodified	_ILDGKRIQY_					0	0	0		ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	MULTI-MSMS	A375_MHC_IP_R1	1	369.6171569824219	3	369.216991	1104.62914	-0.01269	-4.6852E-06	0.23256	8.5866E-05	0.21987	8.1181E-05	369.21703734683524	36.618	0.80931	36.618	36.389	37.198	0					36	15	4	0	0	0	0.04093	1	12240	12240		67.838	31.332	1	56556000			21666	5324	15709	15819	21235	21235					0.08101407260005544
ILDGKRIQY	9	Unmodified	_ILDGKRIQY_					0	0	0		ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	MULTI-SECPEP	A375_MHC_IP_R1	1	553.7214965820312	2	553.321848	1104.62914	-0.85234	-0.00047162	0.22639	0.00012527	-0.62595	-0.00034635	553.3219381168851	36.612	2.0339	36.612	36.184	38.218	0					28	11	4	0	0	0	0.077986	1	12269	12269		99.755	99.755	1	11502000			21667	5324	15709	15819	21236	21236					0.08101407260005544
ILDGKRIQY	9	Unmodified	_ILDGKRIQY_					0	0	0		ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	MULTI-SECPEP	A375_MHC_IP_R2	2	369.6168212890625	3	369.216991	1104.62914	0.093986	3.4701E-05	0.084655	3.1256E-05	0.17864	6.5958E-05	369.21702240107896	35.785	1.1696	36.548	36.233	37.402	0.76338					49	22	4	0	0	0	0.10495	1	12961	12961		74.2	33.96	1	47392000			21668	5324	15709	15819	21237	21237					0.08101407260005544
ILDGKRIQY	9	Unmodified	_ILDGKRIQY_					0	0	0		ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	MULTI-SECPEP	A375_MHC_IP_R2	2	553.720947265625	2	553.321848	1104.62914	-0.95325	-0.00052746	0.37452	0.00020723	-0.57873	-0.00032023	553.3220501554886	35.752	0.60935	36.515	36.233	36.842	0.76338					22	11	3	0	0	0	0.059142	1	12971	12971		106.94	106.94	1	9453500			21669	5324	15709	15819	21238	21238					0.08101407260005544
ILDHEVPSL	9	Unmodified	_ILDHEVPSL_					0	0	0		ENST00000497675.2_1_1:2125076-2125544:-|nuORF;ENST00000476803.1_1_1:2121150-2125598:-|nuORF;nc|ENSG00000162585|Q6NZ36-5|FAAP20;ENSG00000162585|ENST00000378546|FAAP20;nc|ENSG00000162585|Q6NZ36-4|FAAP20;nc|ENSG00000162585|Q6NZ36-3|FAAP20;ENST00000401813.7_1_1:2121150-2129708:-|nuORF;nc|ENSG00000162585|Q6NZ36-2|FAAP20;ENST00000487186.5_1_1:2121150-2130436:-|nuORF	ENST00000497675.2_1_1:2125076-2125544:-|nuORF	ENST00000497675.2_1_1:2125076-2125544:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	512.1793823242188	2	511.779482	1021.54441	-0.044112	-2.2576E-05	-0.27102	-0.0001387	-0.31513	-0.00016128	511.77944070188573	69.772	0.96146	69.772	69.275	70.237	0					29	18	2	0	0	0	0.014271	1	25297	25297		112.59	72.636	1	4857100			21670	6552	15710	15820	21239	21239					0.034500367233818
ILDHEVPSL	9	Unmodified	_ILDHEVPSL_					0	0	0		ENST00000497675.2_1_1:2125076-2125544:-|nuORF;ENST00000476803.1_1_1:2121150-2125598:-|nuORF;nc|ENSG00000162585|Q6NZ36-5|FAAP20;ENSG00000162585|ENST00000378546|FAAP20;nc|ENSG00000162585|Q6NZ36-4|FAAP20;nc|ENSG00000162585|Q6NZ36-3|FAAP20;ENST00000401813.7_1_1:2121150-2129708:-|nuORF;nc|ENSG00000162585|Q6NZ36-2|FAAP20;ENST00000487186.5_1_1:2121150-2130436:-|nuORF	ENST00000497675.2_1_1:2125076-2125544:-|nuORF	ENST00000497675.2_1_1:2125076-2125544:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1790771484375	2	511.779482	1021.54441	-0.64924	-0.00033227	-0.39281	-0.00020103	-1.0421	-0.0005333	511.7792944509452	69.018	0.96173	69.753	69.171	70.133	0.73511					29	18	2	0	0	0	0.037185	1	26105	26105		96.285	52.512	1	5182200			21671	6552	15710	15820	21240	21240					0.034500367233818
ILDILGLGASG	11	Unmodified	_ILDILGLGASG_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	A375_MHC_IP_R1	1	514.199951171875	2	514.802957	1027.59136	-0.11678	-6.0118E-05	3.3225	0.0017104	3.2057	0.0016503	515.3039658406319	69.81	0.50555	69.81	69.579	70.085	0					13	9	2	0	0	0	0.82225	1	25433	25433		22.736	0.98964	1	1002800			21672	6242	15711	15821	21241	21241					0.0786689627452688
ILDIPFHQV	9	Unmodified	_ILDIPFHQV_					0	0	0		ENST00000486620.5_1_22:46727586-46742367:+|nuORF;ENST00000496831.5_1_22:46731930-46742367:+|nuORF;nc|ENSG00000100416|O75648-5|TRMU;nc|ENSG00000100416|O75648-2|TRMU;TRMU-ST13|2|fusion;ENSG00000100416|ENST00000645190|TRMU;TRMU-ST13|1|fusion	ENST00000486620.5_1_22:46727586-46742367:+|nuORF	ENST00000486620.5_1_22:46727586-46742367:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	541.705322265625	2	541.305667	1080.59678	-0.74066	-0.00040092	0.71565	0.00038739	-0.025005	-1.3536E-05	541.3063109584868	95.165	0.45866	95.165	94.853	95.312	0					13	8	2	0	0	0	0.41434	1	34998	34998		32.786	13.347	1	1053000			21673	2177	15712	15822	21242	21242					0.059706198569983826
ILDIPFHQV	9	Unmodified	_ILDIPFHQV_					0	0	0		ENST00000486620.5_1_22:46727586-46742367:+|nuORF;ENST00000496831.5_1_22:46731930-46742367:+|nuORF;nc|ENSG00000100416|O75648-5|TRMU;nc|ENSG00000100416|O75648-2|TRMU;TRMU-ST13|2|fusion;ENSG00000100416|ENST00000645190|TRMU;TRMU-ST13|1|fusion	ENST00000486620.5_1_22:46727586-46742367:+|nuORF	ENST00000486620.5_1_22:46727586-46742367:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	541.7053833007812	2	541.305667	1080.59678	-0.62327	-0.00033738	0.43462	0.00023526	-0.18865	-0.00010212	541.3057894948672	94.349	0.65878	95.094	94.767	95.426	0.74473					18	12	3	0	0	0	0.2487	1	35866	35866		34.402	3.7652	1	1369900			21674	2177	15712	15822	21243	21243					0.059706198569983826
ILDISEHTL	9	Unmodified	_ILDISEHTL_					0	0	0		ENSG00000006634|ENST00000265728|DBF4	ENSG00000006634|ENST00000265728|DBF4	ENSG00000006634|ENST00000265728|DBF4	MULTI-SECPEP	A375_MHC_IP_R1	1	520.65771484375	2	520.784764	1039.55498	-0.49078	-0.00025559	1.0929	0.00056916	0.60211	0.00031357	520.7847524287946	73.156	0.607	73.156	72.83	73.437	0					16	11	2	0	0	0	0.39388	1	26689	26689		39.957	5.8549	1	1585200			21675	922	15713	15823	21244	21244					0.03678019377821329
ILDKCCNWC	9	Unmodified	_ILDKCCNWC_					0	0	0			REV__nc|ENSG00000159625|Q8IY82-2|DRC7	REV__nc|ENSG00000159625|Q8IY82-2|DRC7	MULTI-MSMS	A375_MHC_IP_R1	1	549.6316528320312	2	549.232473	1096.45039	-0.34883	-0.00019159	-1.2259	-0.00067328	-1.5747	-0.00086487	549.2314399618593	78.699	0.60661	78.699	78.454	79.061	0					15	11	2	0	0	0	0.65721	1	28746	28746		10.824	1.4408	1	1654600	+		21676	20129	15714	15824	21245	21245					-0.09397464966423286
ILDKEPIIV	9	Unmodified	_ILDKEPIIV_					0	0	0		nc|ENSG00000151276|Q96QZ7|MAGI1;nc|ENSG00000151276|Q96QZ7-3|MAGI1;nc|ENSG00000151276|Q96QZ7-5|MAGI1;nc|ENSG00000151276|Q96QZ7-7|MAGI1;nc|ENSG00000151276|Q96QZ7-6|MAGI1;ENSG00000151276|ENST00000402939|MAGI1;nc|ENSG00000151276|Q96QZ7-4|MAGI1	nc|ENSG00000151276|Q96QZ7|MAGI1	nc|ENSG00000151276|Q96QZ7|MAGI1	MULTI-SECPEP	A375_MHC_IP_R1	1	520.171630859375	2	520.323525	1038.6325	-0.58088	-0.00030225	0.1324	6.8893E-05	-0.44848	-0.00023335	520.8250167254106	76.481	0.30301	76.481	76.219	76.522	0					7	5	2	0	0	0	0.69381	1	27849	27849		10.8	1.4164	1	1163700			21677	14678	15715	15825	21246	21246					0.11472657313993295
ILDKIVQKV	9	Unmodified	_ILDKIVQKV_					0	0	0		nc|ENSG00000147364|Q8TCJ0|FBXO25;ENSG00000147364|ENST00000350302|FBXO25;nc|ENSG00000147364|Q8TCJ0-3|FBXO25	nc|ENSG00000147364|Q8TCJ0|FBXO25	nc|ENSG00000147364|Q8TCJ0|FBXO25	MULTI-MSMS	A375_MHC_IP_R1	1	352.9656066894531	3	352.56562	1054.67503	-0.13354	-4.7082E-05	0.10782	3.8015E-05	-0.025719	-9.0676E-06	352.5656350983929	50.402	0.66113	50.402	50.153	50.814	0					19	12	2	0	0	0	0.058226	1	17851	17851		61.09	13.358	1	5868200			21678	5678	15716	15826	21247	21247					0.14988052442208755
ILDKIVQKV	9	Unmodified	_ILDKIVQKV_					0	0	0		nc|ENSG00000147364|Q8TCJ0|FBXO25;ENSG00000147364|ENST00000350302|FBXO25;nc|ENSG00000147364|Q8TCJ0-3|FBXO25	nc|ENSG00000147364|Q8TCJ0|FBXO25	nc|ENSG00000147364|Q8TCJ0|FBXO25	MULTI-SECPEP	A375_MHC_IP_R1	1	528.744873046875	2	528.344792	1054.67503	-0.57159	-0.000302	0.33565	0.00017734	-0.23595	-0.00012466	528.3447597519378	50.417	0.35809	50.417	50.254	50.613	0					14	6	3	0	0	0	0.26374	1	17879	17879		55.235	28.967	1	2200300			21679	5678	15716	15826	21248	21248					0.14988052442208755
ILDKIVQKV	9	Unmodified	_ILDKIVQKV_					0	0	0		nc|ENSG00000147364|Q8TCJ0|FBXO25;ENSG00000147364|ENST00000350302|FBXO25;nc|ENSG00000147364|Q8TCJ0-3|FBXO25	nc|ENSG00000147364|Q8TCJ0|FBXO25	nc|ENSG00000147364|Q8TCJ0|FBXO25	MULTI-MSMS	A375_MHC_IP_R2	2	352.9655456542969	3	352.56562	1054.67503	-0.52337	-0.00018452	0.18043	6.3612E-05	-0.34294	-0.00012091	352.56564422531363	49.49	0.76188	50.247	49.995	50.757	0.75737					31	14	4	0	0	0	0.030891	1	18590	18590		74.2	8.726	1	8325400			21680	5678	15716	15826	21249	21249					0.14988052442208755
ILDKIVQKV	9	Unmodified	_ILDKIVQKV_					0	0	0		nc|ENSG00000147364|Q8TCJ0|FBXO25;ENSG00000147364|ENST00000350302|FBXO25;nc|ENSG00000147364|Q8TCJ0-3|FBXO25	nc|ENSG00000147364|Q8TCJ0|FBXO25	nc|ENSG00000147364|Q8TCJ0|FBXO25	MULTI-MSMS	A375_MHC_IP_R2	2	528.744140625	2	528.344792	1054.67503	-0.82404	-0.00043538	-0.18234	-9.6339E-05	-1.0064	-0.00053172	528.3447295576831	49.483	0.35313	50.241	50.096	50.449	0.75737					13	6	3	0	0	0	0.06355	1	18612	18612		63.227	33.387	1	3621200			21681	5678	15716	15826	21250	21250					0.14988052442208755
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;HSP90AB1|p.I628Sfs*56|1|0.12|ENSG00000096384|chr6:44253195-44253195|A/-|frameshift_variant;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	A375_MHC_IP_R1	1	358.292236328125	3	357.897258	1070.66995	0.078064	2.7939E-05	-0.51972	-0.00018601	-0.44166	-0.00015807	357.897128785938	20.054	1.7803	20.054	19.571	21.352	0					128	34	7	0	0	0	0.14659	1	5260	5260		42.312	3.0995	1	1118900000			21682	2057	15717	15827	21251	21251					0.1374374857962266
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;HSP90AB1|p.I628Sfs*56|1|0.12|ENSG00000096384|chr6:44253195-44253195|A/-|frameshift_variant;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	A375_MHC_IP_R1	1	358.297119140625	3	357.897258	1070.66995	0.39692	0.00014205	-0.43224	-0.0001547	-0.035323	-1.2642E-05	357.8970670989343	22.242	2.5874	22.242	21.048	23.635	0					129	50	4	0	0	0	0.068433	2	5913	5836;5913		57.108	10.529	1	104940000			21683	2057	15717	15827	21252;21253	21253					0.1374374857962266
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;HSP90AB1|p.I628Sfs*56|1|0.12|ENSG00000096384|chr6:44253195-44253195|A/-|frameshift_variant;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	A375_MHC_IP_R2	2	357.9536437988281	3	357.897258	1070.66995	-0.4751	-0.00017004	-0.56184	-0.00020108	-1.0369	-0.00037112	357.89708475220397	18.955	1.3731	19.559	19.423	20.796	0.60308					80	28	6	0	0	0	0.0089117	2	5764	5708;5764		97.741	14.463	1	1638599999.9999998			21684	2057	15717	15827	21254;21255	21255					0.1374374857962266
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;HSP90AB1|p.I628Sfs*56|1|0.12|ENSG00000096384|chr6:44253195-44253195|A/-|frameshift_variant;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	A375_MHC_IP_R2	2	536.741455078125	2	536.342249	1070.66995	-1.1337	-0.00060806	-0.11719	-6.2853E-05	-1.2509	-0.00067091	536.3421052105315	18.955	0.38097	19.559	19.452	19.833	0.60308					22	7	4	0	0	0	0.0021188	2	5714	5714;5771		166.77	48.701	1	168690000			21685	2057	15717	15827	21256;21257	21256					0.1374374857962266
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;HSP90AB1|p.I628Sfs*56|1|0.12|ENSG00000096384|chr6:44253195-44253195|A/-|frameshift_variant;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	A375_MHC_IP_R2	2	357.9132995605469	3	357.897258	1070.66995	-0.54657	-0.00019562	0.060806	2.1762E-05	-0.48577	-0.00017385	357.8972451800094	21.741	2.6457	22.361	20.66	23.306	0.61932					121	51	5	0	0	0	0.61363	1	6297	6297		14.218	2.5868	1	65488000			21686	2057	15717	15827	21258	21258					0.1374374857962266
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;HSP90AB1|p.I628Sfs*56|1|0.12|ENSG00000096384|chr6:44253195-44253195|A/-|frameshift_variant;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	A375_MHC_IP_R2	2	536.7413940429688	2	536.342249	1070.66995	-1.2066	-0.00064717	0.26642	0.00014289	-0.94021	-0.00050428	536.3422707271849	21.741	0.51101	22.361	22.132	22.643	0.61932					13	9	2	0	0	0	0.091516	1	6873	6873		62.869	20.913	1	5624200			21687	2057	15717	15827	21259	21259					0.1374374857962266
ILDLDFKAR	9	Unmodified	_ILDLDFKAR_					0	0	0		ENST00000585488.1_1_12:133768044-133768326:+|nuORF	ENST00000585488.1_1_12:133768044-133768326:+|nuORF	ENST00000585488.1_1_12:133768044-133768326:+|nuORF	MSMS	A375_MHC_IP_R1	1	545.7166748046875	2	545.816399	1089.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.16	1	122.16	121.66	122.66	0								0	0	0	0.15411	1	45431	45431		14.838	4.6549	1				21688	13719	15718	15828	21260	21260					0.07702004885709357
ILDLIKKGV	9	Unmodified	_ILDLIKKGV_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-SECPEP	A375_MHC_IP_R2	2	500.25128173828125	2	499.83406	997.653567	-0.85214	-0.00042593	0.66158	0.00033068	-0.19057	-9.5253E-05	499.8341089248643	60.531	0.20481	61.276	61.109	61.314	0.74503					5	3	2	0	0	0	0.49205	1	22901	22901		27.629	4.8925	1	694220			21689	2933	15719	15829	21261	21261					0.15464667413527877
ILDLSKWT	8	Unmodified	_ILDLSKWT_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	MULTI-MSMS	A375_MHC_IP_R2	2	488.678466796875	2	488.279118	974.543683	-0.7305	-0.00035669	-0.023354	-1.1403E-05	-0.75385	-0.00036809	488.27895595527093	71.168	0.45629	71.902	71.605	72.061	0.73421					13	8	2	0	0	0	0.57209	1	27001	27001		46.021	4.1813	1	2769800	+		21690	18329	15720	15830	21262	21262					0.055392420743373805
ILDLSRNLI	9	Unmodified	_ILDLSRNLI_					0	0	0		nc|ENSG00000205213|Q9BXB1-2|LGR4;ENSG00000205213|ENST00000379214|LGR4	nc|ENSG00000205213|Q9BXB1-2|LGR4	nc|ENSG00000205213|Q9BXB1-2|LGR4	MULTI-SECPEP	A375_MHC_IP_R1	1	529.22412109375	2	528.824224	1055.63389	-0.40987	-0.00021675	0.25631	0.00013554	-0.15356	-8.1208E-05	528.82463554914	88.885	0.55879	88.885	88.561	89.12	0					15	10	2	0	0	0	0.53748	1	32631	32631		30.637	15.798	1	1687100			21691	9500	15721	15831	21263	21263					0.10830291402771763
ILDMRTNTV	9	Unmodified	_ILDMRTNTV_					0	0	0		ENST00000495256.1_1_7:105766226-105766550:+|nuORF	ENST00000495256.1_1_7:105766226-105766550:+|nuORF	ENST00000495256.1_1_7:105766226-105766550:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	531.6553955078125	2	531.784241	1061.55393	-0.65108	-0.00034623	-0.69705	-0.00037068	-1.3481	-0.00071691	531.7838444654834	73.148	0.55997	73.883	73.581	74.141	0.7354					16	10	3	0	0	0	0.55359	1	27814	27814		21.747	1.293	1	1885000			21692	12702	15722	15832	21264	21264					0.025614817372343168
ILDNADVLSQY	11	Unmodified	_ILDNADVLSQY_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-SECPEP	A375_MHC_IP_R1	1	626.2164916992188	2	625.816793	1249.61903	-0.55202	-0.00034546	-0.019738	-1.2352E-05	-0.57176	-0.00035782	625.8168625079627	99.099	0.71139	99.099	98.711	99.422	0					27	13	3	0	0	0	0.12692	1	36377	36377		73.196	44.702	1	3891900			21693	2388	15723	15833	21265	21265					0.004207547441183124
ILDNADVLSQY	11	Unmodified	_ILDNADVLSQY_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-SECPEP	A375_MHC_IP_R2	2	626.2166748046875	2	625.816793	1249.61903	-0.76241	-0.00047713	-0.092569	-5.7931E-05	-0.85498	-0.00053506	625.8169138839104	98.438	0.61038	99.198	98.895	99.505	0.75977					18	11	2	0	0	0	0.2329	1	37332	37332		57.204	41.955	1	3932400			21694	2388	15723	15833	21266	21266					0.004207547441183124
ILDNSPASY	9	Unmodified	_ILDNSPASY_					0	0	0		ENSG00000175215|ENST00000398073|CTDSP2;ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENSG00000144579|ENST00000273062|CTDSP1;ENST00000497677.5_1_2:219264813-219268311:+|nuORF	ENSG00000175215|ENST00000398073|CTDSP2	ENSG00000175215|ENST00000398073|CTDSP2	MULTI-MSMS	A375_MHC_IP_R1	1	490.6399841308594	2	490.24019	978.465826	-0.36999	-0.00018139	0.14578	7.1468E-05	-0.22421	-0.00010992	490.24009276816554	53.3	0.50696	53.3	53.048	53.555	0					21	9	3	0	0	0	0.10411	1	19017	19017		49.933	19.708	1	1854200			21695	7940	15724	15834	21267	21267					-0.0242681558172535
ILDNSPASY	9	Unmodified	_ILDNSPASY_					0	0	0		ENSG00000175215|ENST00000398073|CTDSP2;ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENSG00000144579|ENST00000273062|CTDSP1;ENST00000497677.5_1_2:219264813-219268311:+|nuORF	ENSG00000175215|ENST00000398073|CTDSP2	ENSG00000175215|ENST00000398073|CTDSP2	MULTI-SECPEP	A375_MHC_IP_R2	2	490.6398010253906	2	490.24019	978.465826	-1.0252	-0.00050261	-0.059708	-2.9271E-05	-1.0849	-0.00053188	490.24014378182534	52.645	0.55534	53.397	53.134	53.69	0.75225					20	10	3	0	0	0	0.14422	1	19887	19887		61.357	17.499	1	2050200			21696	7940	15724	15834	21268	21268					-0.0242681558172535
ILDNSPGAYRS	11	Unmodified	_ILDNSPGAYRS_					0	0	0		ENSG00000175826|ENST00000574322|CTDNEP1	ENSG00000175826|ENST00000574322|CTDNEP1	ENSG00000175826|ENST00000574322|CTDNEP1	MULTI-SECPEP	A375_MHC_IP_R2	2	398.6116943359375	3	398.20341	1191.5884	-0.14562	-5.7987E-05	0.039416	1.5695E-05	-0.10621	-4.2292E-05	398.2033883924057	27.92	0.30506	28.598	28.452	28.757	0.67857					10	5	2	0	0	0	0.97182	1	9640	9640		5.1984	0	1	2694200			21697	7984	15725	15835	21269	21269					0.0002702114970816183
ILDNYLFIV	9	Unmodified	_ILDNYLFIV_					0	0	0		ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	MULTI-SECPEP	A375_MHC_IP_R2	2	555.0599975585938	2	555.3157	1108.61685	-0.6903	-0.00038334	-2.2158	-0.0012305	-2.9061	-0.0016138	555.3138561677572	133.74	0.20413	133.9	133.75	133.96	0.16487					5	3	2	0	0	0	0.69507	1	52628	52628		13.906	0	1	1070500			21698	1872	15726	15836	21270	21270					0.06688370796928211
ILDPAEPTGDV	11	Unmodified	_ILDPAEPTGDV_					0	0	0		ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728|OAS2	ENSG00000111335|ENST00000392583|OAS2	ENSG00000111335|ENST00000392583|OAS2	MULTI-MSMS	A375_MHC_IP_R1	1	376.92742919921875	3	376.1924	1125.55537	0.28791	0.00010831	0.45739	0.00017207	0.7453	0.00028038	376.19266897620065	83.599	0.66051	83.599	83.226	83.887	0					34	12	4	0	0	0	0.60747	1	30550	30550		13.519	0	1	6262500			21699	2986	15727	15837	21271	21271					-0.002386056929935876
ILDPHVVLL	9	Unmodified	_ILDPHVVLL_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MULTI-SECPEP	A375_MHC_IP_R1	1	510.2189636230469	2	509.81841	1017.62227	-0.2813	-0.00014341	-0.13978	-7.1262E-05	-0.42107	-0.00021467	509.8183440174869	106.08	1.7883	106.08	105.7	107.49	0					71	34	4	0	0	0	0.24479	1	38881	38881		50.855	2.5092	1	28640000			21700	2814	15728	15838	21272	21272					0.11416094379421793
ILDPKLVSPV	10	Unmodified	_ILDPKLVSPV_					0	0	0			REV__ENSG00000169180|ENST00000304658|XPO6	REV__ENSG00000169180|ENST00000304658|XPO6	MULTI-MSMS	A375_MHC_IP_R1	1	541.430419921875	2	540.8368	1079.65905	-0.52813	-0.00028563	0.29414	0.00015908	-0.23399	-0.00012655	540.83705350636	81.881	0.5563	81.881	81.657	82.214	0					23	10	3	0	0	0	0.70741	1	30007	30007		14.838	1.3304	1	4628000	+		21701	20914	15729	15839	21273	21273					0.1224034620531711
ILDQKINEV	9	Unmodified	_ILDQKINEV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1;ENST00000446285.5_1_2:10584646-10585158:-|nuORF	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-SECPEP	A375_MHC_IP_R1	1	536.705322265625	2	536.305864	1070.59717	-0.85906	-0.00046072	0.43547	0.00023355	-0.42359	-0.00022717	536.306074361837	46.905	1.7798	46.905	46.545	48.325	0					92	34	5	0	0	0	0.0051923	1	16430	16430		179.28	61.215	1	146150000			21702	3336	15730	15840	21274	21274					0.06469994786175448
ILDQKINEV	9	Unmodified	_ILDQKINEV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1;ENST00000446285.5_1_2:10584646-10585158:-|nuORF	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-SECPEP	A375_MHC_IP_R2	2	536.767578125	2	536.305864	1070.59717	-0.78967	-0.0004235	0.19516	0.00010466	-0.59451	-0.00031884	536.3059437778771	46.112	2.079	46.877	46.303	48.382	0.76519					97	40	4	0	0	0	4.931E-05	1	17267	17267		189.73	75.082	1	142600000			21703	3336	15730	15840	21275	21275					0.06469994786175448
ILDQKINEV	9	Unmodified	_ILDQKINEV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1;ENST00000446285.5_1_2:10584646-10585158:-|nuORF	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-SECPEP	A375_MHC_IP_R2	2	1072.19580078125	1	1071.60445	1070.59717	0.14445	0.0001548	-0.39006	-0.00041799	-0.2456	-0.00026319	1071.6044596795691	46.104	0.30411	46.869	46.704	47.008	0.76519					10	5	2	0	0	0	0.019499	1	17265	17265		103.42	36.963	1	2232000			21704	3336	15730	15840	21276	21276					0.06469994786175448
ILDQKINEV	9	Unmodified	_ILDQKINEV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1;ENST00000446285.5_1_2:10584646-10585158:-|nuORF	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MATCH	A375_MHC_IP_R1	1		1	1071.60445	1070.59717	-0.048324	-5.1784E-05	-0.33759	-0.00036177	-0.38592	-0.00041355	1071.6044010106452	46.926	0.35631	46.926	46.699	47.055	0	0.028433	2.6688E-05	NaN	103.42	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2572700			21705	3336	15730	15840							0.06469994786175448
ILDQLIFPK	9	Unmodified	_ILDQLIFPK_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	A375_MHC_IP_R1	1	544.3165893554688	2	543.831517	1085.64848	-0.38108	-0.00020724	-0.49781	-0.00027073	-0.87889	-0.00047797	543.8315461546115	93.111	0.30554	93.111	92.871	93.176	0					8	5	2	0	0	0	0.60982	1	34154	34154		10.074	0	1	923500			21706	2121	15731	15841	21277	21277					0.10908363550902322
ILDQSRETV	9	Unmodified	_ILDQSRETV_					0	0	0		nc|ENSG00000180376|A2RUB6-3|CCDC66;ENSG00000180376|ENST00000394672|CCDC66	nc|ENSG00000180376|A2RUB6-3|CCDC66	nc|ENSG00000180376|A2RUB6-3|CCDC66	MULTI-SECPEP	A375_MHC_IP_R1	1	531.1560668945312	2	530.785296	1059.55604	-0.75174	-0.00039901	-0.037295	-1.9796E-05	-0.78903	-0.00041881	530.785417486295	32.308	0.40527	32.308	32.179	32.585	0					9	7	2	0	0	0	0.5212	1	10456	10456		26.268	26.268	1	2793700			21707	8293	15732	15842	21278	21278					0.02864233746709033
ILDQSRETV	9	Unmodified	_ILDQSRETV_					0	0	0		nc|ENSG00000180376|A2RUB6-3|CCDC66;ENSG00000180376|ENST00000394672|CCDC66	nc|ENSG00000180376|A2RUB6-3|CCDC66	nc|ENSG00000180376|A2RUB6-3|CCDC66	MULTI-SECPEP	A375_MHC_IP_R2	2	531.1456909179688	2	530.785296	1059.55604	-0.64465	-0.00034217	-0.051593	-2.7385E-05	-0.69625	-0.00036956	530.7854585024801	31.69	0.35512	32.427	32.249	32.605	0.73691					9	6	2	0	0	0	0.49205	1	11229	11229		27.629	6.7576	1	1707600			21708	8293	15732	15842	21279	21279					0.02864233746709033
ILDQTNVSA	9	Unmodified	_ILDQTNVSA_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-SECPEP	A375_MHC_IP_R1	1	481.1531982421875	2	480.753464	959.492375	0.0026873	1.2919E-06	0.59308	0.00028512	0.59576	0.00028642	480.7532189511527	45.273	0.60554	45.273	44.928	45.534	0					20	11	2	0	0	0	0.14572	1	15838	15838		53.833	15.657	1	3909700			21709	6014	15733	15843	21280	21280					0.011008733096105061
ILDQTNVSA	9	Unmodified	_ILDQTNVSA_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-SECPEP	A375_MHC_IP_R2	2	481.1533203125	2	480.753464	959.492375	-0.63064	-0.00030318	0.8529	0.00041004	0.22227	0.00010685	480.75350082381226	44.595	0.71175	45.364	44.934	45.646	0.7691					26	13	3	0	0	0	0.10103	1	16646	16646		62.573	14.824	1	4735000			21710	6014	15733	15843	21281	21281					0.011008733096105061
ILDRDLTKV	9	Unmodified	_ILDRDLTKV_					0	0	0		ENST00000270443.8_1_19:53472241-53472481:-|nuORF	ENST00000270443.8_1_19:53472241-53472481:-|nuORF	ENST00000270443.8_1_19:53472241-53472481:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	357.9537658691406	3	358.21688	1071.62881	0.35141	0.00012588	-0.77404	-0.00027728	-0.42264	-0.0001514	358.216521627746	39.093	0.66075	39.093	38.78	39.441	0					16	12	3	0	0	0	0.77948	1	13457	13457		3.8763	1.5936	1	1900900			21711	10377	15734	15844	21282	21282					0.09585987540117458
ILDRLASEPL	10	Unmodified	_ILDRLASEPL_					0	0	0			REV__ENST00000467388.1_1_2:216203501-216211697:+|nuORF	REV__ENST00000467388.1_1_2:216203501-216211697:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	563.6952514648438	2	563.826963	1125.63937	-0.41932	-0.00023643	-0.18404	-0.00010377	-0.60337	-0.00034019	563.8268929467172	99.092	0.60902	99.092	98.762	99.371	0					17	11	2	0	0	0	0.91909	1	36468	36468		9.3831	9.3831	1	1429200	+		21712	19089	15735	15845	21283	21283					0.08157970194565678
ILDTSVAYV	9	Unmodified	_ILDTSVAYV_					0	0	0		nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B	nc|ENSG00000054523|O60333-2|KIF1B	nc|ENSG00000054523|O60333-2|KIF1B	MULTI-MSMS	A375_MHC_IP_R1	1	491.1688232421875	2	490.768583	979.522613	-0.48981	-0.00024038	0.42794	0.00021002	-0.061873	-3.0365E-05	490.76866944606525	90.382	0.81148	90.382	89.931	90.742	0					23	15	2	0	0	0	0.13491	1	33192	33192		44.407	4.4497	1	3616600			21713	1260	15736	15846	21284	21284					0.03203231974805476
ILDTSVAYV	9	Unmodified	_ILDTSVAYV_					0	0	0		nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B	nc|ENSG00000054523|O60333-2|KIF1B	nc|ENSG00000054523|O60333-2|KIF1B	MULTI-MSMS	A375_MHC_IP_R2	2	490.7003479003906	2	490.768583	979.522613	-0.44947	-0.00022059	0.014811	7.2689E-06	-0.43466	-0.00021332	490.76846782973826	89.586	0.86246	90.317	89.836	90.699	0.7318					31	16	3	0	0	0	0.042197	2	34148	34090;34148		67.344	17.531	1	3527700			21714	1260	15736	15846	21285;21286	21286					0.03203231974805476
ILDTVRRLV	9	Unmodified	_ILDTVRRLV_					0	0	0			REV__ENST00000447092.5_1_3:50358074-50358356:-|nuORF	REV__ENST00000447092.5_1_3:50358074-50358356:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	362.63238525390625	3	362.232752	1083.67643	-0.22914	-8.3003E-05	-0.36691	-0.00013291	-0.59605	-0.00021591	362.23260794987726	45.173	0.45635	45.938	45.694	46.15	0.76518					23	8	4	0	0	0	0.74875	1	16860	16860		7.1017	0	1	7175300	+		21715	24863	15737	15847	21287	21287					0.1379368653099391
ILDVRNFI	8	Unmodified	_ILDVRNFI_					0	0	0		ENST00000523409.5_2_8:59347484-59360107:+|nuORF;ENST00000451057.1_1_7:156990296-156991186:-|nuORF;ENSG00000215114|ENST00000399598|UBXN2B	ENST00000523409.5_2_8:59347484-59360107:+|nuORF	ENST00000523409.5_2_8:59347484-59360107:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	495.65740966796875	2	495.292559	988.570566	-0.41073	-0.00020343	0.69458	0.00034402	0.28384	0.00014059	495.2927701921196	64.506	0.20438	65.246	65.106	65.31	0.74022					5	3	2	0	0	0	0.55372	1	24480	24480		48.346	0	1	951920			21716	9639	15738	15848	21288	21288					0.07582350685515848
ILEAKKDSL	9	Unmodified	_ILEAKKDSL_					0	0	0		tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	508.89605712890625	2	508.802957	1015.59136	-0.33686	-0.0001714	-1.3198	-0.0006715	-1.6566	-0.0008429	509.3043635059412	82.866	0.30205	82.866	82.772	83.075	0					6	5	2	0	0	0	0.53748	1	30294	30294		30.637	6.616	1	1643800			21717	29746	15739	15849	21289	21289					0.08418896274520193
ILEASHMIQ	9	Unmodified	_ILEASHMIQ_					0	0	0		ENST00000492803.1_1_13:73372062-73409389:+|nuORF;ENSG00000083535|ENST00000326291|PIBF1	ENST00000492803.1_1_13:73372062-73409389:+|nuORF	ENST00000492803.1_1_13:73372062-73409389:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	521.7130737304688	2	521.273509	1040.53247	-0.6869	-0.00035806	0.96722	0.00050419	0.28032	0.00014612	521.2738712073937	129.47	0.2542	129.47	129.35	129.6	0					10	4	3	0	0	0	0.32899	1	49764	49764		28.487	3.813	1	20822000			21718	1780	15740	15850	21290	21290					0.013820967085393931
ILEASHMIQ	9	Unmodified	_ILEASHMIQ_					0	0	0		ENST00000492803.1_1_13:73372062-73409389:+|nuORF;ENSG00000083535|ENST00000326291|PIBF1	ENST00000492803.1_1_13:73372062-73409389:+|nuORF	ENST00000492803.1_1_13:73372062-73409389:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	521.7125244140625	2	521.273509	1040.53247	-0.66431	-0.00034629	0.052082	2.7149E-05	-0.61223	-0.00031914	521.27350638729	129.2	0.30301	129.44	129.31	129.62	0.23946					14	5	4	0	0	0	0.46038	1	50753	50753		21.747	2.3076	1	20823000			21719	1780	15740	15850	21291	21291					0.013820967085393931
ILECIYLYF	9	Unmodified	_ILECIYLYF_					0	0	0		ENST00000373316.4_1_X:77381443-77381596:+|nuORF	ENST00000373316.4_1_X:77381443-77381596:+|nuORF	ENST00000373316.4_1_X:77381443-77381596:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	589.1947631835938	2	588.804111	1175.59367	-0.5635	-0.00033179	1.6597	0.00097723	1.0962	0.00064545	588.8051456829843	102.71	0.40597	103.47	103.28	103.68	0.76428					11	7	2	0	0	0	0.43707	1	38966	38966		36.044	12.896	1	1619800			21720	11228	15741	15851	21292	21292					0.012896086879663926
ILEDDEDYL	9	Unmodified	_ILEDDEDYL_					0	0	0		nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2;ENST00000367112.1_2_6:158500311-158517393:+|nuORF	nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-3|SYNJ2	MULTI-SECPEP	A375_MHC_IP_R1	1	563.1124877929688	2	562.753327	1123.4921	-0.45466	-0.00025586	1.471	0.00082779	1.0163	0.00057192	562.7537290673251	99.409	0.45674	99.409	99.117	99.574	0					12	8	2	0	0	0	0.77244	1	36549	36549		2.3027	2.3027	1	1089300			21721	1671	15742	15852	21293	21293					-0.06470591200923081
ILEDDEDYL	9	Unmodified	_ILEDDEDYL_					0	0	0		nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2;ENST00000367112.1_2_6:158500311-158517393:+|nuORF	nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-3|SYNJ2	MULTI-MATCH	A375_MHC_IP_R2	2		2	562.753327	1123.4921	-0.44852	-0.0002524	1.2041	0.00067761	0.75559	0.00042521	563.254104125893	98.738	0.30482	99.498	99.403	99.708	0.75977	0.044344	-0.00027276	NaN	2.3027	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1364300			21722	1671	15742	15852							-0.06470591200923081
ILEEEKIY	8	Unmodified	_ILEEEKIY_					0	0	0		nc|ENSG00000170088|Q8IY95-2|TMEM192;ENSG00000170088|ENST00000306480|TMEM192	nc|ENSG00000170088|Q8IY95-2|TMEM192	nc|ENSG00000170088|Q8IY95-2|TMEM192	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1810302734375	2	518.78169	1035.54883	-0.61911	-0.00032118	-1.2048	-0.00062504	-1.8239	-0.00094622	518.7809302332194	101.6	0.60975	102.36	102.11	102.72	0.76428					25	11	3	0	0	0	0.86765	1	38483	38483		32.117	0	1	4855200			21723	7470	15743	15853	21294	21294					0.032475011463020564
ILEEEKIY	8	Unmodified	_ILEEEKIY_					0	0	0		nc|ENSG00000170088|Q8IY95-2|TMEM192;ENSG00000170088|ENST00000306480|TMEM192	nc|ENSG00000170088|Q8IY95-2|TMEM192	nc|ENSG00000170088|Q8IY95-2|TMEM192	MULTI-MATCH	A375_MHC_IP_R1	1		2	518.78169	1035.54883	-0.47211	-0.00024492	-1.4071	-0.00072997	-1.8792	-0.0009749	518.7808465915284	102.43	0.80814	102.43	102.15	102.96	0	0.034812	-0.00014873	NaN	32.117	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5350500			21724	7470	15743	15853							0.032475011463020564
ILEEIETAI	9	Unmodified	_ILEEIETAI_					0	0	0		ENST00000487282.5_1_2:36780308-36806125:-|nuORF;ENSG00000171055|ENST00000405912|FEZ2;nc|ENSG00000171055|Q9UHY8-2|FEZ2	ENST00000487282.5_1_2:36780308-36806125:-|nuORF	ENST00000487282.5_1_2:36780308-36806125:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	515.712890625	2	515.786973	1029.55939	-0.75985	-0.00039192	-1.0998	-0.00056725	-1.8596	-0.00095917	516.2884442011429	105.79	0.35744	106.55	106.32	106.68	0.75977					8	6	2	0	0	0	0.74651	1	40016	40016		2.0598	0	1	888600			21725	7569	15744	15854	21295	21295					0.04579483800716844
ILEEITRFL	9	Unmodified	_ILEEITRFL_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-SECPEP	A375_MHC_IP_R1	1	567.0638427734375	2	567.331882	1132.64921	0.089346	5.0689E-05	-0.5033	-0.00028554	-0.41396	-0.00023485	567.3314785691357	69.73	0.25304	69.73	69.579	69.832	0					7	4	2	0	0	0	0.67221	1	25279	25279		13.508	0	1	855230			21726	1349	15745	15855	21296	21296					0.0881915819995811
ILEFLLLSKR	10	Unmodified	_ILEFLLLSKR_					0	0	0			REV__ENST00000382038.6_1_5:34913622-34914834:-|nuORF	REV__ENST00000382038.6_1_5:34913622-34914834:-|nuORF	MSMS	A375_MHC_IP_R2	2	616.2744140625	2	616.392273	1230.76999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.29	1	145.31	144.81	145.81	0.021408								0	0	0	0.15591	1	56730	56730		1.6526	0	1		+		21727	24241	15746	15856	21297	21297					0.16383985913421384
ILEHKKKILKK	11	Unmodified	_ILEHKKKILKK_					0	0	0		nc|ENSG00000291287|Q5SQ80|ANKRD20A2P;nc|ENSG00000276203|Q5VUR7|ANKRD20A3P;nc|ENSG00000172014|Q4UJ75|ANKRD20A4P;ENSG00000260691|ENST00000562196|ANKRD20A1;ENST00000427650.2_1_9:69386004-69400453:+|nuORF	nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	MSMS	A375_MHC_IP_R1	1	689.8681030273438	2	689.468847	1376.92314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.29	1	144.29	143.79	144.79	0								0	0	0	0.1636	1	55335	55335		0	0	1				21728	9932	15747	15857	21298	21298					0.24975601029882455
ILEKIKFLS	9	Unmodified	_ILEKIKFLS_					0	0	0		tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	545.7020263671875	2	545.847167	1089.67978	-0.49038	-0.00026767	0.83994	0.00045848	0.34957	0.00019081	546.3494270453909	101.02	0.30316	101.02	100.89	101.19	0					8	5	2	0	0	0	0.775	1	37166	37166		6.7232	0	1	1420200			21729	29448	15748	15858	21299	21299					0.13852936584999043
ILEKKVEKV	9	Unmodified	_ILEKKVEKV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000436135.1_1_1:158495166-158495214:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MSMS	A375_MHC_IP_R1	1	362.6134948730469	3	362.569142	1084.6856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.355	1	19.355	18.855	19.855	0								0	0	0	0.10937	1	4736	4736		39.213	16.438	1				21730	1722	15749	15859	21300	21300					0.14664035096643602
ILEKMKPLE	9	Unmodified	_ILEKMKPLE_					0	0	0		PRUNE2|p.E2679K|1|0.35|ENSG00000106772|chr9:76703578-76703578|C/T|missense_variant	PRUNE2|p.E2679K|1|0.35|ENSG00000106772|chr9:76703578-76703578|C/T|missense_variant	PRUNE2|p.E2679K|1|0.35|ENSG00000106772|chr9:76703578-76703578|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2222290039062	2	550.822835	1099.63112	-0.58486	-0.00032215	-0.82928	-0.00045679	-1.4141	-0.00077894	550.8224135754086	61.333	0.40894	61.333	61.126	61.534	0					12	7	2	0	0	0	0.67539	1	22155	22155		16.149	0	1	1561000			21731	15240	15750	15860	21301	21301					0.08528699953581054
ILEKMKPLE	9	Unmodified	_ILEKMKPLE_					0	0	0		PRUNE2|p.E2679K|1|0.35|ENSG00000106772|chr9:76703578-76703578|C/T|missense_variant	PRUNE2|p.E2679K|1|0.35|ENSG00000106772|chr9:76703578-76703578|C/T|missense_variant	PRUNE2|p.E2679K|1|0.35|ENSG00000106772|chr9:76703578-76703578|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	551.2214965820312	2	550.822835	1099.63112	-1.0921	-0.00060153	-0.61142	-0.00033678	-1.7035	-0.00093831	550.8224959032195	60.301	0.41013	61.046	60.853	61.263	0.74503					12	7	2	0	0	0	0.59098	1	22854	22854		21.537	9.2963	1	2029700			21732	15240	15750	15860	21302	21302					0.08528699953581054
ILELLKHNF	9	Unmodified	_ILELLKHNF_					0	0	0			REV__ENSG00000264006|ENST00000648824|AKR1C8	REV__ENSG00000264006|ENST00000648824|AKR1C8	MULTI-MSMS	A375_MHC_IP_R1	1	376.6256103515625	3	376.225486	1125.65463	0.053341	2.0068E-05	0.07263	2.7325E-05	0.12597	4.7393E-05	376.2254846265039	67.082	0.51229	67.082	66.836	67.348	0					20	9	3	0	0	0	0.082375	1	24306	24306		53.833	2.4176	1	4145200	+		21733	22923	15751	15861	21303	21303					0.0968288178239618
ILELLKHNF	9	Unmodified	_ILELLKHNF_					0	0	0			REV__ENSG00000264006|ENST00000648824|AKR1C8	REV__ENSG00000264006|ENST00000648824|AKR1C8	MULTI-MSMS	A375_MHC_IP_R2	2	376.62548828125	3	376.225486	1125.65463	0.063061	2.3725E-05	0.12692	4.775E-05	0.18998	7.1475E-05	376.22545650469624	66.122	0.76648	66.86	66.475	67.241	0.73811					29	14	4	0	0	0	0.066859	1	25060	25060		57.722	11.982	1	3913500	+		21734	22923	15751	15861	21304	21304					0.0968288178239618
ILELLKHNF	9	Unmodified	_ILELLKHNF_					0	0	0			REV__ENSG00000264006|ENST00000648824|AKR1C8	REV__ENSG00000264006|ENST00000648824|AKR1C8	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	376.225486	1125.65463	0.053341	2.0068E-05	0.07263	2.7325E-05	0.12597	4.7393E-05	376.2254846265039	67.082	0.51229	67.082	66.836	67.348	0	0.11139	-2.9873E-05	NaN	57.722	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4145200	+		21735	22923	15751	15861							0.0968288178239618
ILELLKHNF	9	Unmodified	_ILELLKHNF_					0	0	0			REV__ENSG00000264006|ENST00000648824|AKR1C8	REV__ENSG00000264006|ENST00000648824|AKR1C8	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	376.225486	1125.65463	0.063061	2.3725E-05	0.12692	4.775E-05	0.18998	7.1475E-05	376.22545650469624	66.122	0.76648	66.86	66.475	67.241	0.73811	-0.11139	3.14E-05	NaN	57.722	29	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3913500	+		21736	22923	15751	15861							0.0968288178239618
ILELMQLSL	9	Oxidation (M)	_ILELM(Oxidation (M))QLSL_		ILELM(1)QLSL		ILELM(44)QLSL	0	0	1			REV__nc|ENSG00000100697|Q9UPY3-2|DICER1	REV__nc|ENSG00000100697|Q9UPY3-2|DICER1	MULTI-MSMS	A375_MHC_IP_R1	1	538.706787109375	2	538.307018	1074.59948	-0.4849	-0.00026102	1.1168	0.00060118	0.6319	0.00034015	538.3078068995288	125.81	1.4613	125.81	125.5	126.96	0					79	28	3	0	0	0	0.13797	1	47891	47891		43.858	43.858	1	31492000	+		21737	17115	15752	15862	21305	21305		475			0.06516707199625671
ILEMILCI	8	Unmodified	_ILEMILCI_					0	0	0			REV__ENSG00000099282|ENST00000373290|TSPAN15	REV__ENSG00000099282|ENST00000373290|TSPAN15	MULTI-SECPEP	A375_MHC_IP_R2	2	473.6716003417969	2	474.26885	946.523147	-0.45442	-0.00021552	0.099513	4.7196E-05	-0.3549	-0.00016832	474.26894658502545	48.07	0.85715	48.831	48.378	49.235	0.76128					29	16	3	0	0	0	0.90224	1	18177	18177		26.341	6.9023	1	6062300	+		21738	17015	15753	15863	21306	21306					0.04774612098651687
ILEMTNKF	8	Unmodified	_ILEMTNKF_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78112818-78113115:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-SECPEP	A375_MHC_IP_R2	2	497.64752197265625	2	498.265153	994.515753	-0.49318	-0.00024573	0.67411	0.00033588	0.18093	9.0151E-05	498.2635761807045	80.017	0.50729	80.762	80.453	80.961	0.74473					24	9	4	0	0	0	0.90224	1	30355	30355		13.508	0	1	3240000			21739	5252	15754	15864	21307	21307					0.018275958225899558
ILENLRSKI	9	Unmodified	_ILENLRSKI_					0	0	0		CON__P02676;FGB|p.R199C|1|0.29|ENSG00000171564|chr4:154567697-154567697|C/T|missense_variant;ENSG00000171564|ENST00000302068|FGB	CON__P02676	CON__P02676	MULTI-SECPEP	A375_MHC_IP_R1	1	543.7380981445312	2	543.337498	1084.66044	-0.6061	-0.00032932	0.50388	0.00027378	-0.10222	-5.5539E-05	543.337768350403	68.691	0.457	68.691	68.412	68.869	0					12	8	2	0	0	0	0.71341	1	24948	24948		13.042	0	1	1677600		+	21740	584	15755	15865	21308	21308					0.12149980294088891
ILENPPEEMKL	11	Unmodified	_ILENPPEEMKL_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-2|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-MSMS	A375_MHC_IP_R1	1	657.2451171875	2	656.844496	1311.67444	-0.28202	-0.00018524	0.40431	0.00026557	0.1223	8.033E-05	656.8445641912493	72.273	0.55675	72.273	71.968	72.524	0					19	10	3	0	0	0	0.30351	1	26251	26251		46.475	15.839	1	2496000			21741	1600	15756	15866	21309	21309					0.031068449401800535
ILENPPEEMKL	11	Unmodified	_ILENPPEEMKL_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-2|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-MSMS	A375_MHC_IP_R2	2	657.2435302734375	2	656.844496	1311.67444	-1.1888	-0.00078084	0.25199	0.00016552	-0.93678	-0.00061532	656.8446369554127	71.575	0.50559	72.309	72.01	72.516	0.73421					14	9	2	0	0	0	0.35071	1	27179	27179		42.835	18.815	1	2676500			21742	1600	15756	15866	21310	21310					0.031068449401800535
ILENPPEEMKL	11	Oxidation (M)	_ILENPPEEM(Oxidation (M))KL_		ILENPPEEM(1)KL		ILENPPEEM(53)KL	0	0	1		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-2|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-MSMS	A375_MHC_IP_R2	2	665.2418823242188	2	664.841953	1327.66935	-0.6591	-0.0004382	0.21404	0.0001423	-0.44506	-0.0002959	664.8421466984468	47.256	0.45897	48.017	47.867	48.326	0.76127					11	8	2	0	0	0	0.2128	1	17741	17741		53.47	33.055	1	2802900			21743	1600	15756	15867	21311	21311		48			0.018625410775712226
ILEQRQSLY	9	Unmodified	_ILEQRQSLY_					0	0	0			REV__ENSG00000136274|ENST00000490531|NACAD	REV__ENSG00000136274|ENST00000490531|NACAD	MULTI-SECPEP	A375_MHC_IP_R2	2	575.7159423828125	2	575.316763	1148.61897	-0.13434	-7.7289E-05	-1.1751	-0.00067605	-1.3094	-0.00075333	575.3163973458351	63.636	0.5598	64.376	64.088	64.648	0.74022					20	10	3	0	0	0	0.76452	1	24123	24123		18.135	11.412	1	1968300	+		21744	18928	15757	15868	21312	21312					0.050607995347718315
ILERHKKKRKR	11	Unmodified	_ILERHKKKRKR_					0	0	0			REV__nc|ENSG00000147133|P21675-25|TAF1	REV__nc|ENSG00000147133|P21675-25|TAF1	MSMS	A375_MHC_IP_R1	1	498.09625244140625	3	497.995071	1490.96338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.179	1	36.179	35.679	36.679	0								0	0	0	0.1636	1	12089	12089		0	0	1		+		21745	19572	15758	15869	21313	21313					0.23753960472981817
ILERRLRV	8	Unmodified	_ILERRLRV_					0	0	0		ENSG00000131697|ENST00000378156|NPHP4;nc|ENSG00000131697|O75161-2|NPHP4;ENST00000478423.6_1_1:5965468-6029316:-|nuORF;ENST00000378169.7_1_1:5965468-6021937:-|nuORF	ENSG00000131697|ENST00000378156|NPHP4	ENSG00000131697|ENST00000378156|NPHP4	MULTI-SECPEP	A375_MHC_IP_R2	2	352.9774475097656	3	352.232975	1053.6771	-0.53104	-0.00018705	-0.33434	-0.00011777	-0.86538	-0.00030482	352.2328720142023	26.7	0.5108	27.36	27.212	27.722	0.65992					13	9	2	0	0	0	0.94587	1	9133	9133		20.454	9.6297	1	1218100			21746	4342	15759	15870	21314	21314					0.15240525970693852
ILESAWYSF	9	Unmodified	_ILESAWYSF_					0	0	0			REV__ENSG00000135956|ENST00000258439|TMEM127	REV__ENSG00000135956|ENST00000258439|TMEM127	MSMS	A375_MHC_IP_R2	2	558.2012939453125	2	558.274032	1114.53351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.365	1	61.11	60.61	61.61	0.74503								0	0	0	0.099728	1	22855	22855		42.095	3.9434	1		+		21747	18903	15760	15871	21315	21315					-0.019173656509110515
ILETVAKEV	9	Unmodified	_ILETVAKEV_					0	0	0			REV__ENSG00000064999|ENST00000360359|ANKS1A	REV__ENSG00000064999|ENST00000360359|ANKS1A	MULTI-MSMS	A375_MHC_IP_R2	2	501.7065124511719	2	501.297507	1000.58046	-0.49662	-0.00024895	-0.68844	-0.00034511	-1.1851	-0.00059407	501.29724824892827	91.007	0.55678	91.742	91.362	91.919	0.7345					15	10	2	0	0	0	0.14922	1	34571	34571		41.84	0	1	1743300	+		21748	16485	15761	15872	21316	21316					0.08019493900224006
ILETVAKEV	9	Unmodified	_ILETVAKEV_					0	0	0			REV__ENSG00000064999|ENST00000360359|ANKS1A	REV__ENSG00000064999|ENST00000360359|ANKS1A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	501.297507	1000.58046	-0.49662	-0.00024895	-0.68844	-0.00034511	-1.1851	-0.00059407	501.29724824892827	91.007	0.55678	91.742	91.362	91.919	0.7345	-0.019804	-0.00052138	NaN	41.84	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1743300	+		21749	16485	15761	15872							0.08019493900224006
ILEWETMKF	9	Unmodified	_ILEWETMKF_					0	0	0		ENST00000543621.6_3_10:101635556-101635676:-|nuORF	ENST00000543621.6_3_10:101635556-101635676:-|nuORF	ENST00000543621.6_3_10:101635556-101635676:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	598.2296752929688	2	598.804642	1195.59473	-0.43238	-0.00025891	3.8618	0.0023125	3.4294	0.0020536	598.8077821966999	61.15	0.30617	61.15	60.973	61.279	0					7	5	2	0	0	0	0.69504	1	22073	22073		7.9102	0	1	666280			21750	13312	15762	15873	21317	21317					0.0047582305685409665
ILFATEAGVV	10	Unmodified	_ILFATEAGVV_					0	0	0			REV__nc|ENSG00000266200|P54317|PNLIPRP2	REV__nc|ENSG00000266200|P54317|PNLIPRP2	MULTI-MSMS	A375_MHC_IP_R2	2	510.6974182128906	2	510.292225	1018.5699	-1.0286	-0.0005249	0.034803	1.776E-05	-0.99383	-0.00050714	510.2921842561385	71.822	1.1643	72.557	72.213	73.377	0.73421					65	22	4	0	0	0	0.11068	2	27155	27155;27171		61.357	5.8547	1	71448000	+		21751	27538	15763	15874	21318;21319	21318					0.06135511245804537
ILFDPKTSV	9	Unmodified	_ILFDPKTSV_					0	0	0		nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4;CLIP4|p.E58K|1|0.26|ENSG00000115295|chr2:29131296-29131296|G/A|missense_variant	nc|ENSG00000115295|Q8N3C7-3|CLIP4	nc|ENSG00000115295|Q8N3C7-3|CLIP4	MULTI-MSMS	A375_MHC_IP_R1	1	510.181884765625	2	510.292225	1018.5699	-0.33197	-0.0001694	-0.18376	-9.3772E-05	-0.51574	-0.00026318	510.292054670202	72.599	1.5706	72.599	71.917	73.488	0					84	30	5	0	0	0	0.2415	1	26660	26660		34.932	4.2955	1	56547000			21752	3297	15764	15875	21320	21320					0.06135511245804537
ILFDPKTSV	9	Unmodified	_ILFDPKTSV_					0	0	0		nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4;CLIP4|p.E58K|1|0.26|ENSG00000115295|chr2:29131296-29131296|G/A|missense_variant	nc|ENSG00000115295|Q8N3C7-3|CLIP4	nc|ENSG00000115295|Q8N3C7-3|CLIP4	MULTI-SECPEP	A375_MHC_IP_R2	2	509.7034912109375	2	510.292225	1018.5699	-1.0286	-0.0005249	0.034803	1.776E-05	-0.99383	-0.00050714	510.2921842561385	71.822	1.1643	72.557	72.213	73.377	0.73421					65	22	4	0	0	0	0.044425	1	27267	27267		87.258	16.125	1	71448000			21753	3297	15764	15875	21321	21321					0.06135511245804537
ILFEDIFDV	9	Unmodified	_ILFEDIFDV_					0	0	0		ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;ENST00000443489.5_1_3:184081178-184081358:+|nuORF;nc|ENSG00000163882|P52434-2|POLR2H	ENSG00000163882|ENST00000456318|POLR2H	ENSG00000163882|ENST00000456318|POLR2H	MULTI-SECPEP	A375_MHC_IP_R1	1	556.189453125	2	555.789515	1109.56448	-0.85234	-0.00047372	-0.099271	-5.5174E-05	-0.95162	-0.0005289	555.7897763821219	136.23	0.51343	136.23	136.05	136.56	0					13	9	2	0	0	0	0.67539	1	52507	52507		16.942	1.0951	1	2461600			21754	6739	15765	15876	21322	21322					0.014077876633336928
ILFEGVEYI	9	Unmodified	_ILFEGVEYI_					0	0	0		nc|ENSG00000074603|Q6V1X1-2|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8;nc|ENSG00000074603|Q6V1X1-4|DPP8;nc|ENSG00000074603|Q6V1X1-5|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	MULTI-SECPEP	A375_MHC_IP_R1	1	1082.894287109375	1	1082.57684	1081.56956	0.14336	0.0001552	-0.34039	-0.00036849	-0.19702	-0.00021329	1082.576945955964	128.66	0.25385	128.66	128.53	128.79	0					6	4	2	0	0	0	0.040439	1	49458	49458		81.613	41.656	1	4064700			21755	1586	15766	15877	21323	21323					0.032040915259585745
ILFFEILDF	9	Unmodified	_ILFFEILDF_					0	0	0		nc|ENSG00000135541|Q8N157-2|AHI1;ENSG00000135541|ENST00000265602|AHI1;nc|ENSG00000135541|Q8N157-3|AHI1	nc|ENSG00000135541|Q8N157-2|AHI1	nc|ENSG00000135541|Q8N157-2|AHI1	MULTI-SECPEP	A375_MHC_IP_R2	2	386.6250915527344	3	386.214476	1155.6216	-0.23882	-9.2236E-05	-0.078688	-3.039E-05	-0.31751	-0.00012263	386.5482694308518	40.543	0.6097	41.317	40.98	41.59	0.77451					32	11	4	0	0	0	0.71541	1	15077	15077		11.495	9.2119	1	6369300			21756	4695	15767	15878	21324	21324					0.050012549397024486
ILFGHENRV	9	Unmodified	_ILFGHENRV_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-SECPEP	A375_MHC_IP_R1	1	362.60137939453125	3	362.201452	1083.58253	-0.071573	-2.5924E-05	0.017591	6.3713E-06	-0.053982	-1.9552E-05	362.2014152934961	38.031	1.6312	38.031	37.607	39.238	0					76	31	5	0	0	0	0.034037	1	12828	12828		80.676	59.086	1	55735000			21757	1484	15768	15879	21325	21325					0.04407967428710435
ILFGHENRV	9	Unmodified	_ILFGHENRV_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-SECPEP	A375_MHC_IP_R1	1	543.198486328125	2	542.79854	1083.58253	-0.83823	-0.00045499	0.37104	0.0002014	-0.46719	-0.00025359	542.7986578246025	38.041	0.45723	38.041	37.761	38.218	0					17	8	3	0	0	0	0.074405	1	12849	12849		70.332	28.515	1	7321900			21758	1484	15768	15879	21326	21326					0.04407967428710435
ILFGHENRV	9	Unmodified	_ILFGHENRV_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-SECPEP	A375_MHC_IP_R2	2	362.6012878417969	3	362.201452	1083.58253	-0.78861	-0.00028564	0.50408	0.00018258	-0.28453	-0.00010306	362.20158226612097	37.021	1.2748	37.792	37.513	38.788	0.7709					60	24	4	0	0	0	0.05021	1	13487	13487		71.708	45.44	1	64427000			21759	1484	15768	15879	21327	21327					0.04407967428710435
ILFGHENRV	9	Unmodified	_ILFGHENRV_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-SECPEP	A375_MHC_IP_R2	2	543.1979370117188	2	542.79854	1083.58253	-1.4862	-0.00080673	1.7268	0.00093731	0.24056	0.00013058	542.7988595195377	37.024	0.45592	37.795	37.564	38.02	0.7709					25	8	4	0	0	0	0.23894	1	13518	13518		55.503	23.049	1	8162800			21760	1484	15768	15879	21328	21328					0.04407967428710435
ILFLFQKKYKW	11	Unmodified	_ILFLFQKKYKW_					0	0	0			REV__ENST00000449237.4_1_Y:2803717-2829201:+|nuORF	REV__ENST00000449237.4_1_Y:2803717-2829201:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	505.73626708984375	3	505.302507	1512.88569	-0.68996	-0.00034864	0.44096	0.00022282	-0.249	-0.00012582	505.3026475780782	137.69	0.86902	137.69	137.59	138.46	0					21	16	2	0	0	0	0.73781	1	53044	53044		1.4551	0.94916	1	842280	+		21761	24877	15769	15880	21329	21329					0.14976509764255752
ILFRLTLAP	9	Unmodified	_ILFRLTLAP_					0	0	0			REV__ENSG00000198919|ENST00000361582|DZIP3	REV__ENSG00000198919|ENST00000361582|DZIP3	MULTI-SECPEP	A375_MHC_IP_R2	2	521.6712036132812	2	522.334227	1042.6539	-0.66254	-0.00034607	0.10502	5.4854E-05	-0.55753	-0.00029122	522.8357222299998	81.538	0.55409	82.281	81.877	82.431	0.74293					20	10	3	0	0	0	0.73363	1	30918	30918		10.824	2.9138	1	2048200	+		21762	22447	15770	15881	21330	21330					0.13428087133365807
ILFSEGLIKA	10	Unmodified	_ILFSEGLIKA_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-SECPEP	A375_MHC_IP_R1	1	545.6659545898438	2	545.828975	1089.6434	-0.62888	-0.00034326	0.54908	0.0002997	-0.079802	-4.3558E-05	545.8293741188706	95.357	0.45469	95.357	95.16	95.614	0					16	8	2	0	0	0	0.27758	1	35066	35066		45.74	0	1	2299800			21763	1156	15771	15882	21331	21331					0.10216059688286805
ILFSEGLIKA	10	Unmodified	_ILFSEGLIKA_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-SECPEP	A375_MHC_IP_R2	2	546.2291259765625	2	545.828975	1089.6434	-0.57205	-0.00031224	0.40671	0.00022199	-0.16535	-9.0251E-05	545.8292853489119	94.473	0.45712	95.218	94.969	95.426	0.74474					19	8	3	0	0	0	0.62001	1	35898	35898		33.445	3.6043	1	2209200			21764	1156	15771	15882	21332	21332					0.10216059688286805
ILFTISELQEP	11	Unmodified	_ILFTISELQEP_					0	0	0		HYDIN|p.P4461S|1|0.5|ENSG00000157423|chr16:70835696-70835696|G/A|missense_variant	HYDIN|p.P4461S|1|0.5|ENSG00000157423|chr16:70835696-70835696|G/A|missense_variant	HYDIN|p.P4461S|1|0.5|ENSG00000157423|chr16:70835696-70835696|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	645.483154296875	2	645.353011	1288.69147	-0.33023	-0.00021312	0.9699	0.00062593	0.63966	0.00041281	645.3538191320467	79.337	0.46338	79.337	79.111	79.574	0					19	8	3	0	0	0	0.66366	2	28935	28935;28986		18.373	0.23811	1	2913600			21765	14143	15772	15883	21333;21334	21333					0.05867088817649346
ILFTISELQEP	11	Unmodified	_ILFTISELQEP_					0	0	0		HYDIN|p.P4461S|1|0.5|ENSG00000157423|chr16:70835696-70835696|G/A|missense_variant	HYDIN|p.P4461S|1|0.5|ENSG00000157423|chr16:70835696-70835696|G/A|missense_variant	HYDIN|p.P4461S|1|0.5|ENSG00000157423|chr16:70835696-70835696|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	645.75390625	2	645.353011	1288.69147	-0.6322	-0.00040799	1.1359	0.00073304	0.50367	0.00032505	645.3540210065169	78.532	0.60911	79.277	78.982	79.591	0.74474					25	11	3	0	0	0	0.59391	1	29826	29826		23.79	4.4278	1	3904900			21766	14143	15772	15883	21335	21335					0.05867088817649346
ILGASPSLLV	10	Unmodified	_ILGASPSLLV_					0	0	0			REV__ENST00000550541.1_1_12:29302310-29304559:+|nuORF	REV__ENST00000550541.1_1_12:29302310-29304559:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	485.7021179199219	2	485.302593	968.590633	-0.26122	-0.00012677	-0.27143	-0.00013173	-0.53265	-0.0002585	485.3023407499973	75.287	0.45432	75.287	75.009	75.464	0					13	8	2	0	0	0	0.58828	1	27458	27458		21.747	1.293	1	1727600	+		21767	26035	15773	15884	21336	21336					0.10508101625487143
ILGFKDVTI	9	Unmodified	_ILGFKDVTI_					0	0	0			REV__ENSG00000149256|ENST00000278550|TENM4	REV__ENSG00000149256|ENST00000278550|TENM4	MULTI-SECPEP	A375_MHC_IP_R1	1	503.7030029296875	2	503.302593	1004.59063	-0.37026	-0.00018635	0.91459	0.00046031	0.54433	0.00027396	503.30332172660775	99.092	1.1728	99.092	98.3	99.473	0					32	22	3	0	0	0	0.3213	1	36401	36401		37.974	11.09	1	3693200	+		21768	19669	15774	15885	21337	21337					0.08852101625473097
ILGGPGTVQGV	11	Unmodified	_ILGGPGTVQGV_					0	0	0		ENSG00000173992|ENST00000533244|CCS;ENST00000526066.5_1_11:66366934-66367108:+|nuORF	ENSG00000173992|ENST00000533244|CCS	ENSG00000173992|ENST00000533244|CCS	MULTI-MSMS	A375_MHC_IP_R1	1	499.6871337890625	2	499.287474	996.560395	-0.23137	-0.00011552	-0.37	-0.00018474	-0.60137	-0.00030026	499.2872609609204	71.333	0.71359	71.333	70.902	71.615	0					25	13	3	0	0	0	0.063241	1	25868	25868		76.825	40.319	1	5108000			21769	7846	15775	15886	21338	21338					0.06197742960284813
ILGGPGTVQGV	11	Unmodified	_ILGGPGTVQGV_					0	0	0		ENSG00000173992|ENST00000533244|CCS;ENST00000526066.5_1_11:66366934-66367108:+|nuORF	ENSG00000173992|ENST00000533244|CCS	ENSG00000173992|ENST00000533244|CCS	MULTI-SECPEP	A375_MHC_IP_R2	2	499.6869201660156	2	499.287474	996.560395	-0.52481	-0.00026203	-0.30209	-0.00015083	-0.8269	-0.00041286	499.28733793078925	70.512	0.6084	71.246	70.895	71.503	0.73421					30	11	4	0	0	0	0.011039	1	26726	26726		117.84	52.603	1	7571300			21770	7846	15775	15886	21339	21339					0.06197742960284813
ILGGQPPNV	9	Unmodified	_ILGGQPPNV_					0	0	0		nc|ENSG00000213079|Q9UPN6-2|SCAF8;ENSG00000213079|ENST00000367178|SCAF8	nc|ENSG00000213079|Q9UPN6-2|SCAF8	nc|ENSG00000213079|Q9UPN6-2|SCAF8	MULTI-SECPEP	A375_MHC_IP_R1	1	448.1556091308594	2	447.75581	893.497067	-0.079817	-3.5739E-05	-1.0805	-0.00048378	-1.1603	-0.00051952	447.75583758924034	59.711	1.729	59.711	58.481	60.21	0					47	33	2	0	0	0	0.01139	1	21447	21447		92.822	48.415	1	5306100			21771	14893	15776	15887	21340	21340					0.046058022430429446
ILGGQPPNV	9	Unmodified	_ILGGQPPNV_					0	0	0		nc|ENSG00000213079|Q9UPN6-2|SCAF8;ENSG00000213079|ENST00000367178|SCAF8	nc|ENSG00000213079|Q9UPN6-2|SCAF8	nc|ENSG00000213079|Q9UPN6-2|SCAF8	MULTI-SECPEP	A375_MHC_IP_R2	2	448.1556701660156	2	447.75581	893.497067	-0.72173	-0.00032316	-0.32672	-0.00014629	-1.0484	-0.00046945	447.75576486658696	59.02	0.86166	59.767	59.387	60.249	0.74714					37	16	3	0	0	0	0.07754	1	22281	22281		74.423	44.198	1	5937300			21772	14893	15776	15887	21341	21341					0.046058022430429446
ILGHHWISL	9	Unmodified	_ILGHHWISL_					0	0	0			REV__ENST00000445268.5_1_2:210881261-210881294:+|nuORF	REV__ENST00000445268.5_1_2:210881261-210881294:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	538.3092651367188	2	538.306001	1074.59745	-0.94082	-0.00050645	-0.069215	-3.7259E-05	-1.01	-0.00054371	538.3057865198753	55.557	0.60751	56.308	55.984	56.591	0.75075					30	11	4	0	0	0	0.63811	1	20865	20865		12.532	0	1	7482600	+		21773	24840	15777	15888	21342	21342					0.06313459296711699
ILGIIILKKRY	11	Unmodified	_ILGIIILKKRY_					0	0	0		nc|ENSG00000205060|Q969S0-2|SLC35B4;nc|ENSG00000205060|Q969S0-3|SLC35B4;ENSG00000205060|ENST00000378509|SLC35B4	nc|ENSG00000205060|Q969S0-2|SLC35B4	nc|ENSG00000205060|Q969S0-2|SLC35B4	MSMS	A375_MHC_IP_R1	1	665.5807495117188	2	665.452665	1328.89078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.741	1	76.741	76.241	77.241	0								0	0	0	0.16353	1	27979	27979		0.35063	0.043601	1				21774	9496	15778	15889	21343	21343					0.23948813626884657
ILGIIILKKRY	11	Unmodified	_ILGIIILKKRY_					0	0	0		nc|ENSG00000205060|Q969S0-2|SLC35B4;nc|ENSG00000205060|Q969S0-3|SLC35B4;ENSG00000205060|ENST00000378509|SLC35B4	nc|ENSG00000205060|Q969S0-2|SLC35B4	nc|ENSG00000205060|Q969S0-2|SLC35B4	MSMS	A375_MHC_IP_R2	2	665.6585083007812	2	665.452665	1328.89078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.612	1	77.352	76.852	77.852	0.74052								0	0	0	0.16353	1	29088	29088		0.35063	0.043601	1				21775	9496	15778	15889	21344	21344					0.23948813626884657
ILGIQPPSV	9	Unmodified	_ILGIQPPSV_					0	0	0		nc|ENSG00000213079|Q9UPN6-2|SCAF8;ENSG00000213079|ENST00000367178|SCAF8	nc|ENSG00000213079|Q9UPN6-2|SCAF8	nc|ENSG00000213079|Q9UPN6-2|SCAF8	MULTI-MSMS	A375_MHC_IP_R1	1	462.68133544921875	2	462.28166	922.548768	-0.031711	-1.466E-05	0.047091	2.1769E-05	0.01538	7.1097E-06	462.2815992387212	106.82	1.2794	106.82	106.16	107.44	0					54	24	3	0	0	0	0.064406	1	39095	39095		58.679	10.333	1	5374900			21776	14893	15779	15890	21345	21345					0.08439545936948889
ILGIQPPSV	9	Unmodified	_ILGIQPPSV_					0	0	0		nc|ENSG00000213079|Q9UPN6-2|SCAF8;ENSG00000213079|ENST00000367178|SCAF8	nc|ENSG00000213079|Q9UPN6-2|SCAF8	nc|ENSG00000213079|Q9UPN6-2|SCAF8	MULTI-SECPEP	A375_MHC_IP_R1	1	923.7387084960938	1	923.556044	922.548768	0.12772	0.00011795	-0.062766	-5.7968E-05	0.064951	5.9986E-05	923.5558691481078	106.84	1.1258	106.84	106.16	107.29	0					45	21	3	0	0	0	0.03109	1	39280	39280		92.653	17.724	1	7402700			21777	14893	15779	15890	21346	21346					0.08439545936948889
ILGIQPPSV	9	Unmodified	_ILGIQPPSV_					0	0	0		nc|ENSG00000213079|Q9UPN6-2|SCAF8;ENSG00000213079|ENST00000367178|SCAF8	nc|ENSG00000213079|Q9UPN6-2|SCAF8	nc|ENSG00000213079|Q9UPN6-2|SCAF8	MULTI-MSMS	A375_MHC_IP_R2	2	462.6815490722656	2	462.28166	922.548768	-0.52566	-0.000243	0.11298	5.2226E-05	-0.41269	-0.00019078	462.28163080904636	105.96	1.2728	106.72	106.07	107.34	0.75977					58	24	3	0	0	0	0.033557	1	40186	40186		71.922	10.565	1	6255500			21778	14893	15779	15890	21347	21347					0.08439545936948889
ILGIQPPSV	9	Unmodified	_ILGIQPPSV_					0	0	0		nc|ENSG00000213079|Q9UPN6-2|SCAF8;ENSG00000213079|ENST00000367178|SCAF8	nc|ENSG00000213079|Q9UPN6-2|SCAF8	nc|ENSG00000213079|Q9UPN6-2|SCAF8	MULTI-SECPEP	A375_MHC_IP_R2	2	923.2825927734375	1	923.556044	922.548768	-0.31913	-0.00029473	-0.18054	-0.00016674	-0.49967	-0.00046148	923.5559115783576	106.05	0.96852	106.81	106.22	107.19	0.75977					45	18	3	0	0	0	0.010998	1	40120	40120		139.14	42.854	1	5881100			21779	14893	15779	15890	21348	21348					0.08439545936948889
ILGIRTPP	8	Unmodified	_ILGIRTPP_					0	0	0			REV__nc|ENSG00000107581|Q14152-2|EIF3A	REV__nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-SECPEP	A375_MHC_IP_R1	1	434.1763610839844	2	433.776545	865.538538	-0.067674	-2.9356E-05	-0.61276	-0.0002658	-0.68044	-0.00029516	433.7765972011117	51.971	0.7108	51.971	51.676	52.387	0					21	13	2	0	0	0	0.81376	1	18473	18473		39.957	3.9131	1	2586800	+		21780	17489	15780	15891	21349	21349					0.10038983002368695
ILGIRTPP	8	Unmodified	_ILGIRTPP_					0	0	0			REV__nc|ENSG00000107581|Q14152-2|EIF3A	REV__nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	A375_MHC_IP_R2	2	434.1761474609375	2	433.776545	865.538538	-0.39193	-0.00017001	-0.75626	-0.00032805	-1.1482	-0.00049806	433.7764711882536	51.188	0.85989	51.94	51.461	52.321	0.75225					26	16	2	0	0	0	0.69583	1	19232	19232		36.044	3.7387	1	3158200	+		21781	17489	15780	15891	21350	21350					0.10038983002368695
ILGIRTPP	8	Unmodified	_ILGIRTPP_					0	0	0			REV__nc|ENSG00000107581|Q14152-2|EIF3A	REV__nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	433.776545	865.538538	-0.39193	-0.00017001	-0.75626	-0.00032805	-1.1482	-0.00049806	433.7764711882536	51.188	0.85989	51.94	51.461	52.321	0.75225	-0.01571	-3.5473E-05	NaN	36.044	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3158200	+		21782	17489	15780	15891							0.10038983002368695
ILGIYNGMSL	10	Unmodified	_ILGIYNGMSL_					0	0	0			REV__ENST00000496059.1_1_2:37364124-37368826:-|nuORF	REV__ENST00000496059.1_1_2:37364124-37368826:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	541.1907348632812	2	540.791535	1079.56852	-0.71767	-0.00038811	-0.36338	-0.00019651	-1.081	-0.00058462	540.7911967271134	87.208	0.96667	87.208	86.881	87.848	0					24	18	3	0	0	0	0.56504	1	32002	32002		41.84	7.7372	1	2573900	+		21783	16070	15781	15892	21351	21351					0.03191553885403664
ILGKGLGK	8	Unmodified	_ILGKGLGK_					0	0	0		nc|ENSG847|P63120|ERVK-19_pro	nc|ENSG847|P63120|ERVK-19_pro	nc|ENSG847|P63120|ERVK-19_pro	MULTI-SECPEP	A375_MHC_IP_R1	1	393.3084411621094	2	393.265813	784.517074	0.278	0.00010933	0.37168	0.00014617	0.64968	0.0002555	393.2659165741862	72.076	0.40504	72.076	71.866	72.271	0					11	7	2	0	0	0	0.972	1	26240	26240		9.3474	5.0182	1	1522200			21784	14971	15782	15893	21352	21352					0.11619597973663076
ILGLQDNLW	9	Unmodified	_ILGLQDNLW_					0	0	0		LRIT3|p.P202L|1|0.45|ENSG00000183423|chr4:109867656-109867656|C/T|missense_variant	LRIT3|p.P202L|1|0.45|ENSG00000183423|chr4:109867656-109867656|C/T|missense_variant	LRIT3|p.P202L|1|0.45|ENSG00000183423|chr4:109867656-109867656|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	536.6948852539062	2	536.295299	1070.57605	-0.71139	-0.00038152	0.2272	0.00012184	-0.48419	-0.00025967	536.2953529038231	74.413	0.70963	74.413	74.095	74.805	0					27	13	3	0	0	0	0.55359	1	27083	27083		21.747	1.293	1	3187500			21785	14314	15783	15894	21353	21353					0.043580294773164496
ILGLTTAAKRE	11	Unmodified	_ILGLTTAAKRE_					0	0	0			REV__ENSG00000179097|ENST00000319595|HTR1F	REV__ENSG00000179097|ENST00000319595|HTR1F	MULTI-MSMS	A375_MHC_IP_R1	1	391.9719543457031	3	391.571434	1171.69247	0.13779	5.3955E-05	1.1623	0.00045514	1.3001	0.00050909	391.57184442075857	20.005	0.60891	20.005	19.674	20.283	0					19	11	2	0	0	0	0.73016	1	5102	5102		8.7518	0.30748	1	2382100	+		21786	21542	15784	15895	21354	21354					0.11349347977215984
ILGLWFCIK	9	Unmodified	_ILGLWFCIK_					0	0	0		ENST00000453168.5_1_3:31659437-31661461:+|nuORF	ENST00000453168.5_1_3:31659437-31661461:+|nuORF	ENST00000453168.5_1_3:31659437-31661461:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	365.6331481933594	3	364.880663	1091.62016	0.073848	2.6946E-05	1.7874	0.00065218	1.8612	0.00067913	365.2171984784637	19.437	0.43628	19.437	19.238	19.674	0					12	8	2	0	0	0	0.73008	1	4872	4872		8.1555	0	1	2103700			21787	12095	15785	15896	21355	21355					0.0780134236995309
ILGPKPQGV	9	Unmodified	_ILGPKPQGV_					0	0	0		ENSG00000164073|ENST00000641686|MFSD8	ENSG00000164073|ENST00000641686|MFSD8	ENSG00000164073|ENST00000641686|MFSD8	MULTI-MSMS	A375_MHC_IP_R1	1	455.181640625	2	454.781828	907.549102	-0.13798	-6.2753E-05	0.067694	3.0786E-05	-0.07029	-3.1967E-05	454.78181568012604	37.224	0.71294	37.224	36.945	37.658	0					34	13	4	0	0	0	0.0070665	1	12499	12499		131.3	38.476	1	25203000			21788	6770	15786	15897	21356	21356					0.09162965656810229
ILGPKPQGV	9	Unmodified	_ILGPKPQGV_					0	0	0		ENSG00000164073|ENST00000641686|MFSD8	ENSG00000164073|ENST00000641686|MFSD8	ENSG00000164073|ENST00000641686|MFSD8	MULTI-MSMS	A375_MHC_IP_R2	2	455.1816101074219	2	454.781828	907.549102	-0.42969	-0.00019541	-0.12919	-5.8753E-05	-0.55888	-0.00025417	454.78173679390585	36.36	0.81541	37.131	36.85	37.665	0.7709					38	15	4	0	0	0	0.0098824	1	13213	13213		117.6	24.777	1	27178000			21789	6770	15786	15897	21357	21357					0.09162965656810229
ILGPPPPSFHL	11	Unmodified	_ILGPPPPSFHL_					0	0	0		ENSG00000015479|ENST00000394805|MATR3;nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF;ENST00000511978.5_1_5:138651425-138655027:+|nuORF;ENST00000509918.5_1_5:138651425-138657594:+|nuORF	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MULTI-SECPEP	A375_MHC_IP_R1	1	588.2344970703125	2	587.834591	1173.65463	-0.21306	-0.00012524	0.43515	0.0002558	0.22209	0.00013055	587.8348421068799	97.558	0.86312	97.558	97.238	98.101	0					28	16	2	0	0	0	0.67995	1	35884	35884		39.95	22.837	1	2069500			21790	1035	15787	15898	21358	21358					0.07474881782422926
ILGPPPPSFHL	11	Unmodified	_ILGPPPPSFHL_					0	0	0		ENSG00000015479|ENST00000394805|MATR3;nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF;ENST00000511978.5_1_5:138651425-138655027:+|nuORF;ENST00000509918.5_1_5:138651425-138657594:+|nuORF	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MULTI-SECPEP	A375_MHC_IP_R2	2	588.2344970703125	2	587.834591	1173.65463	-0.72267	-0.00042481	0.20214	0.00011882	-0.52053	-0.00030599	587.8345273879921	96.818	0.70672	97.574	97.268	97.974	0.75587					24	13	2	0	0	0	0.49142	1	36805	36805		47.749	22.349	1	2798500			21791	1035	15787	15898	21359	21359					0.07474881782422926
ILGPPPSI	8	Unmodified	_ILGPPPSI_					0	0	0		ENST00000358752.3_1_11:94277417-94277780:+|nuORF	ENST00000358752.3_1_11:94277417-94277780:+|nuORF	ENST00000358752.3_1_11:94277417-94277780:+|nuORF	MSMS	A375_MHC_IP_R1	1	397.2802429199219	2	397.244547	792.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.901	1	37.901	37.401	38.401	0								0	0	0	0.16876	1	12808	12808		10.183	3.8293	1				21792	11002	15788	15899	21360	21360					0.07000202845415515
ILGPQGNTI	9	Unmodified	_ILGPQGNTI_					0	0	0		ENST00000307714.12_1_1:32479575-32503673:+|nuORF;nc|ENSG00000121774|Q07666-2|KHDRBS1;ENSG00000121774|ENST00000327300|KHDRBS1	ENST00000307714.12_1_1:32479575-32503673:+|nuORF	ENST00000307714.12_1_1:32479575-32503673:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	456.1429138183594	2	456.761092	911.507631	-0.12749	-5.8233E-05	-0.10171	-4.6459E-05	-0.2292	-0.00010469	456.7610713926595	62.55	0.46137	62.55	62.351	62.813	0					15	8	2	0	0	0	0.43707	1	22655	22655		28.487	0	1	1158000			21793	3738	15789	15900	21361	21361					0.048337848974938424
ILGPTFTL	8	Unmodified	_ILGPTFTL_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	A375_MHC_IP_R2	2	862.9564208984375	1	861.508032	860.500755	-0.62035	-0.00053444	-1.0245	-0.00088259	-1.6448	-0.001417	861.5063175053273	122.77	0.15184	123.15	123.02	123.17	0.3766					4	2	2	0	0	0	0.75322	1	47112	47112		19.439	0.18201	1	11911000			21794	3128	15790	15901	21362	21362					0.06492472016896045
ILGPVIQFL	9	Unmodified	_ILGPVIQFL_					0	0	0		nc|ENSG00000169760|Q8N2Q7-2|NLGN1;ENSG00000169760|ENST00000695368|NLGN1;nc|ENSG00000169760|Q8N2Q7|NLGN1	nc|ENSG00000169760|Q8N2Q7-2|NLGN1	nc|ENSG00000169760|Q8N2Q7-2|NLGN1	MULTI-SECPEP	A375_MHC_IP_R2	2	500.715087890625	2	500.315503	998.616454	-0.52346	-0.00026189	0.040642	2.0334E-05	-0.48281	-0.00024156	500.3154851420309	132.5	0.20558	132.69	132.56	132.76	0.18953					8	3	3	0	0	0	0.74651	1	52147	52147		2.0598	1.535	1	4365200			21795	7436	15791	15902	21363	21363					0.11708995867752492
ILGTDILLL	9	Unmodified	_ILGTDILLL_					0	0	0		ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	MULTI-SECPEP	A375_MHC_IP_R1	1	970.9550170898438	1	970.61831	969.611034	-0.15203	-0.00014756	1.6532	0.0016046	1.5011	0.001457	970.6202823380767	134.3	0.20258	134.3	134.12	134.32	0					5	3	2	0	0	0	0.043556	1	51788	51788		77.984	13.748	1	1713100			21796	4563	15792	15903	21364	21364					0.1250127228530573
ILGTPGRTTI	10	Unmodified	_ILGTPGRTTI_					0	0	0			REV__ENST00000556821.5_1_14:23790825-23791302:+|nuORF	REV__ENST00000556821.5_1_14:23790825-23791302:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	515.2448120117188	2	514.808574	1027.60259	-0.74603	-0.00038406	0.38226	0.00019679	-0.36378	-0.00018727	514.8087155859786	66.673	0.30692	66.673	66.529	66.836	0					12	5	3	0	0	0	0.58828	1	24207	24207		21.747	2.4897	1	1155100	+		21797	26113	15793	15904	21365	21365					0.0898971836866167
ILGVIVKV	8	Unmodified	_ILGVIVKV_					0	0	0		ENSG00000121207|ENST00000336356|LRAT	ENSG00000121207|ENST00000336356|LRAT	ENSG00000121207|ENST00000336356|LRAT	MULTI-MSMS	A375_MHC_IP_R1	1	421.1993408203125	2	420.799489	839.584425	-0.14852	-6.2496E-05	-0.064637	-2.7199E-05	-0.21315	-8.9695E-05	420.79939101318496	85.908	0.50657	85.908	85.717	86.224	0					13	9	2	0	0	0	0.61116	1	31517	31517		44.407	3.9584	1	1026500			21798	3710	15794	15905	21366	21366					0.15821628184619385
ILGVIVKV	8	Unmodified	_ILGVIVKV_					0	0	0		ENSG00000121207|ENST00000336356|LRAT	ENSG00000121207|ENST00000336356|LRAT	ENSG00000121207|ENST00000336356|LRAT	MULTI-MSMS	A375_MHC_IP_R2	2	421.1992492675781	2	420.799489	839.584425	0.026828	1.1289E-05	0.0055745	2.3458E-06	0.032402	1.3635E-05	420.79931730723763	84.879	0.56159	85.615	85.372	85.933	0.73601					14	10	2	0	0	0	0.61116	1	32313	32313		44.407	3.9584	1	1232400			21799	3710	15794	15905	21367	21367					0.15821628184619385
ILHDDEVTV	9	Unmodified	_ILHDDEVTV_					0	0	0		ENST00000487304.6_1_15:69745218-69746066:+|nuORF;nc|ENSG00000137818|P05386-2|RPLP1;ENSG00000137818|ENST00000260379|RPLP1	ENST00000487304.6_1_15:69745218-69746066:+|nuORF	ENST00000487304.6_1_15:69745218-69746066:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	521.6874389648438	2	520.766571	1039.51859	-0.57425	-0.00029905	-0.08674	-4.5171E-05	-0.66099	-0.00034422	520.7665256719229	46.506	1.1706	46.506	46.144	47.315	0					50	22	4	0	0	0	0.46038	1	16367	16367		21.747	3.6003	1	30556000			21800	4921	15795	15906	21368	21368					0.00041142481086353655
ILHDDEVTV	9	Unmodified	_ILHDDEVTV_					0	0	0		ENST00000487304.6_1_15:69745218-69746066:+|nuORF;nc|ENSG00000137818|P05386-2|RPLP1;ENSG00000137818|ENST00000260379|RPLP1	ENST00000487304.6_1_15:69745218-69746066:+|nuORF	ENST00000487304.6_1_15:69745218-69746066:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	521.1664428710938	2	520.766571	1039.51859	-0.62719	-0.00032662	-0.10414	-5.4234E-05	-0.73134	-0.00038085	520.7665513465897	45.663	1.4164	46.429	45.897	47.313	0.76518					57	27	4	0	0	0	0.043556	1	17040	17040		67.344	25.504	1	27120000			21801	4921	15795	15906	21369	21369					0.00041142481086353655
ILHENFTTV	9	Unmodified	_ILHENFTTV_					0	0	0		ENST00000565532.5_1_16:66762088-66770076:-|nuORF;nc|ENSG00000135720|O43237-2|DYNC1LI2;ENSG00000135720|ENST00000258198|DYNC1LI2	ENST00000565532.5_1_16:66762088-66770076:-|nuORF	ENST00000565532.5_1_16:66762088-66770076:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1976928710938	2	537.284931	1072.55531	-0.59124	-0.00031767	0.13463	7.2336E-05	-0.45661	-0.00024533	537.2849075197856	56.117	0.70836	56.117	55.79	56.498	0					33	13	3	0	0	0	0.083712	1	20099	20099		56.177	23.391	1	12768000			21802	4707	15796	15907	21370	21370					0.021934390976412033
ILHENFTTV	9	Unmodified	_ILHENFTTV_					0	0	0		ENST00000565532.5_1_16:66762088-66770076:-|nuORF;nc|ENSG00000135720|O43237-2|DYNC1LI2;ENSG00000135720|ENST00000258198|DYNC1LI2	ENST00000565532.5_1_16:66762088-66770076:-|nuORF	ENST00000565532.5_1_16:66762088-66770076:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1974487304688	2	537.284931	1072.55531	-0.97702	-0.00052494	0.33561	0.00018032	-0.64141	-0.00034462	537.2850782688847	55.237	0.66021	55.988	55.779	56.439	0.75075					22	12	2	0	0	0	0.083712	1	20873	20873		65.235	30.833	1	9804700			21803	4707	15796	15907	21371	21371					0.021934390976412033
ILHHQVMHPL	10	Unmodified	_ILHHQVMHPL_					0	0	0			REV__ENST00000410075.5_1_2:71576016-71576058:+|nuORF	REV__ENST00000410075.5_1_2:71576016-71576058:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	408.2798767089844	3	408.893854	1223.65973	-0.40749	-0.00016662	-1.8494	-0.00075621	-2.2569	-0.00092284	409.2265949738398	56.887	0.71405	57.637	57.356	58.071	0.75015					20	13	2	0	0	0	0.93404	1	21642	21642		4.1895	0	1	1056300	+		21804	24478	15797	15908	21372	21372					0.05684862373391297
ILHIDNARL	9	Unmodified	_ILHIDNARL_					0	0	0		ENSG00000167916|ENST00000264651|KRT24;CON__Q2M2I5	ENSG00000167916|ENST00000264651|KRT24	ENSG00000167916|ENST00000264651|KRT24	MULTI-SECPEP	A375_MHC_IP_R1	1	354.92205810546875	3	355.545219	1063.61383	0.40123	0.00014265	-0.26617	-9.4635E-05	0.13506	4.8018E-05	355.5449636189702	49.437	0.30504	49.437	49.235	49.54	0					9	5	2	0	0	0	0.78348	1	17440	17440		2.4985	0	1	473770		+	21805	613	15798	15909	21373	21373					0.08456540462793782
ILHKFPLQ	8	Unmodified	_ILHKFPLQ_					0	0	0			REV__ENSG00000126814|ENST00000261249|TRMT5	REV__ENSG00000126814|ENST00000261249|TRMT5	MSMS	A375_MHC_IP_R1	1	498.3666076660156	2	498.30547	994.596387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.65	1	126.65	126.15	127.15	0								0	0	0	0.16876	1	48397	48397		9.3474	0	1		+		21806	18399	15799	15910	21374	21374					0.0988724492780193
ILHKKGKVY	9	Unmodified	_ILHKKGKVY_					0	0	0		ENSG00000189409|ENST00000356026|MMP23B;nc|ENSG00000189409|O75900-3|MMP23B;nc|ENSG00000189409|O75900-2|MMP23B	ENSG00000189409|ENST00000356026|MMP23B	ENSG00000189409|ENST00000356026|MMP23B	MULTI-MSMS	A375_MHC_IP_R1	1	362.5733947753906	3	362.565843	1084.6757	0.39593	0.00014355	0.15054	5.4582E-05	0.54648	0.00019813	362.5657534227665	21.137	0.91356	21.137	20.793	21.706	0					31	17	2	0	0	0	0.74768	1	5744	5744		2.7352	0	1	2392700			21807	8984	15800	15911	21375	21375					0.1367489188194213
ILHMYMNY	8	Unmodified	_ILHMYMNY_					0	0	0			REV__ENSG00000021776|ENST00000156471|AQR	REV__ENSG00000021776|ENST00000156471|AQR	MSMS	A375_MHC_IP_R1	1	542.662841796875	2	542.751356	1083.48816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.01	1	103.01	102.51	103.51	0								0	0	0	0.16876	1	37853	37853		11.114	0	1		+		21808	16269	15801	15912	21376	21376					-0.05024630709294797
ILHPKFIWQLW	11	Unmodified	_ILHPKFIWQLW_					0	0	0		nc|ENSG00000144057|Q96JF0-2|ST6GAL2;ENSG00000144057|ENST00000409382|ST6GAL2	nc|ENSG00000144057|Q96JF0-2|ST6GAL2	nc|ENSG00000144057|Q96JF0-2|ST6GAL2	MULTI-MSMS	A375_MHC_IP_R1	1	494.66705322265625	3	494.286969	1479.83908	-0.60963	-0.00030133	-0.5714	-0.00028243	-1.181	-0.00058377	494.28656758790095	132.74	1.0164	132.74	132.08	133.1	0					53	19	4	0	0	0	0.73779	1	51208	51208		0.50596	0.09769	1	9691900			21809	5460	15802	15913	21377	21377					0.11835069932976694
ILHPKRGF	8	Unmodified	_ILHPKRGF_					0	0	0			REV__ZNF774|p.F418Yfs*17|1|0.3|ENSG00000196391|chr15:90361083-90361084|TT/-|frameshift_variant	REV__ZNF774|p.F418Yfs*17|1|0.3|ENSG00000196391|chr15:90361083-90361084|TT/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	484.6398620605469	2	484.295436	966.57632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.707	1	27.367	26.867	27.867	0.65992								0	0	0	0.16876	1	9052	9052		14.582	0.67564	1		+		21810	22190	15803	15914	21378	21378					0.09169493987849364
ILHSEDIP	8	Unmodified	_ILHSEDIP_					0	0	0		AOC1|p.P677L|1|0.17|ENSG00000002726|chr7:150860983-150860983|C/T|missense_variant	AOC1|p.P677L|1|0.17|ENSG00000002726|chr7:150860983-150860983|C/T|missense_variant	AOC1|p.P677L|1|0.17|ENSG00000002726|chr7:150860983-150860983|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	461.6556396484375	2	462.245275	922.475997	-0.21656	-0.0001001	-0.48138	-0.00022252	-0.69794	-0.00032262	462.2449206006458	63.753	0.56286	63.753	63.427	63.99	0					14	10	2	0	0	0	0.972	1	22971	22971		8.5933	0	1	1098000			21811	152	15804	15915	21379	21379					0.011657921435130447
ILHSFLYGR	9	Unmodified	_ILHSFLYGR_					0	0	0		ENSG00000130711|ENST00000253008|PRDM12	ENSG00000130711|ENST00000253008|PRDM12	ENSG00000130711|ENST00000253008|PRDM12	MULTI-MSMS	A375_MHC_IP_R1	1	552.704833984375	2	553.311284	1104.60801	-0.37961	-0.00021004	-1.6893	-0.00093468	-2.0689	-0.0011447	553.3103219682307	128.22	1.6209	128.22	127.27	128.89	0					33	22	4	0	0	0	0.73141	1	49463	49463		6.7232	4.6634	1	16451000			21812	4268	15805	15916	21380	21380					0.059894419511238084
ILHYGELYN	9	Unmodified	_ILHYGELYN_					0	0	0		chr13:94411273-94443436|195|11.01|0.0|13.59|-|1|TE_info:MER1A,MER1A_dup2458,hAT-Charlie,DNA,acceptor,-,94411047,94411273|None,DCT|2	chr13:94411273-94443436|195|11.01|0.0|13.59|-|1|TE_info:MER1A,MER1A_dup2458,hAT-Charlie,DNA,acceptor,-,94411047,94411273|None,DCT|2	chr13:94411273-94443436|195|11.01|0.0|13.59|-|1|TE_info:MER1A,MER1A_dup2458,hAT-Charlie,DNA,acceptor,-,94411047,94411273|None,DCT|2	MULTI-SECPEP	A375_MHC_IP_R2	2	560.65869140625	2	561.284931	1120.55531	-0.89785	-0.00050395	2.1515	0.0012076	1.2537	0.00070367	561.7879415891423	60.519	0.25501	61.264	61.109	61.364	0.74503					6	4	2	0	0	0	0.71541	1	22908	22908		11.64	0.81637	1	658580			21813	425	15806	15917	21381	21381					-0.00014560902354787686
ILIDDHVP	8	Unmodified	_ILIDDHVP_					0	0	0			REV__nc|ENSG00000171453|O15160-2|POLR1C	REV__nc|ENSG00000171453|O15160-2|POLR1C	MULTI-MSMS	A375_MHC_IP_R1	1	461.6556396484375	2	461.255643	920.496732	-0.19149	-8.8327E-05	0.21027	9.6989E-05	0.018778	8.6612E-06	461.25575168975377	63.469	0.40907	63.469	63.223	63.632	0					12	7	2	0	0	0	0.77515	1	22971	22971		12.532	0.29089	1	1435500	+		21814	21065	15807	15918	21382	21382					0.03330382523188291
ILIDPFHKA	9	Unmodified	_ILIDPFHKA_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENST00000475768.1_1_11:115821075-115821177:-|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	A375_MHC_IP_R1	1	352.2744445800781	3	351.874565	1052.60187	-0.17599	-6.1927E-05	0.18848	6.6321E-05	0.012487	4.3938E-06	351.87456392154684	64.725	0.76142	64.725	64.444	65.206	0					32	14	3	0	0	0	0.38603	1	23394	23394		23.79	16.501	1	8177900			21815	7898	15808	15919	21383	21383					0.07766923719623264
ILIDPFHKA	9	Unmodified	_ILIDPFHKA_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENST00000475768.1_1_11:115821075-115821177:-|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-SECPEP	A375_MHC_IP_R1	1	528.0419921875	2	527.30821	1052.60187	-0.57056	-0.00030086	0.48721	0.00025691	-0.083349	-4.3951E-05	527.3084747074884	64.784	0.55973	64.784	64.495	65.055	0					22	10	3	0	0	0	0.34746	1	23401	23401		38.176	9.6887	1	2009400			21816	7898	15808	15919	21384	21384					0.07766923719623264
ILIDPFHKA	9	Unmodified	_ILIDPFHKA_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENST00000475768.1_1_11:115821075-115821177:-|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	A375_MHC_IP_R2	2	352.2745056152344	3	351.874565	1052.60187	-0.16599	-5.8409E-05	-0.098535	-3.4672E-05	-0.26453	-9.3081E-05	351.8744942165959	63.786	0.76318	64.527	64.191	64.954	0.74022					35	14	3	0	0	0	0.13797	1	24158	24158		33.445	21.95	1	9068100			21817	7898	15808	15919	21385	21385					0.07766923719623264
ILIDPIRVV	9	Unmodified	_ILIDPIRVV_					0	0	0		ENST00000581477.1_1_17:61887859-61888617:+|nuORF;nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	ENST00000581477.1_1_17:61887859-61888617:+|nuORF	ENST00000581477.1_1_17:61887859-61888617:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	519.7393798828125	2	519.33951	1036.66447	-0.47685	-0.00024765	0.20785	0.00010795	-0.269	-0.0001397	519.3393899915911	104.53	0.65966	104.53	104.18	104.84	0					22	12	3	0	0	0	0.67539	1	38396	38396		16.149	10.417	1	3058200			21818	9245	15809	15920	21386	21386					0.14760069787803332
ILIDPIRVV	9	Unmodified	_ILIDPIRVV_					0	0	0		ENST00000581477.1_1_17:61887859-61888617:+|nuORF;nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	ENST00000581477.1_1_17:61887859-61888617:+|nuORF	ENST00000581477.1_1_17:61887859-61888617:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	519.7392578125	2	519.33951	1036.66447	-0.64662	-0.00033581	0.10942	5.6825E-05	-0.5372	-0.00027899	519.3395046878139	103.62	0.55827	104.39	104.09	104.65	0.76428					24	10	3	0	0	0	0.55471	1	39243	39243		17.113	0.1706	1	1679200			21819	9245	15809	15920	21387	21387					0.14760069787803332
ILIDVTLLKI	10	Unmodified	_ILIDVTLLKI_					0	0	0		ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000170185|Q8NB14-2|USP38	ENSG00000170185|ENST00000307017|USP38	ENSG00000170185|ENST00000307017|USP38	MULTI-SECPEP	A375_MHC_IP_R1	1	571.28369140625	2	570.88375	1139.75295	-0.47442	-0.00027084	0.85143	0.00048607	0.37701	0.00021523	570.8842082501517	90.412	0.60911	90.412	90.083	90.692	0					24	11	3	0	0	0	0.92957	1	33246	33246		6.2058	0	1	3423500			21820	7479	15810	15921	21388	21388					0.1886606530761128
ILIDWLVQV	9	Unmodified	_ILIDWLVQV_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	MULTI-SECPEP	A375_MHC_IP_R2	2	1099.055419921875	1	1098.65576	1097.64848	0.24515	0.00026934	-0.0061701	-6.7789E-06	0.23898	0.00026256	1098.6558308063163	135.8	0.25946	135.91	135.84	136.1	0.11134					8	4	3	0	0	0	0.77396	1	53432	53432		10.074	0.6908	1	6655100			21821	4546	15811	15922	21389	21389					0.10356363550909009
ILIDWLVQV	9	Unmodified	_ILIDWLVQV_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	ENSG00000134057|ENST00000256442|CCNB1	MULTI-MATCH	A375_MHC_IP_R1	1		1	1098.65576	1097.64848	-0.20173	-0.00022163	0.22818	0.00025069	0.026447	2.9056E-05	1098.6559180601544	135.92	0.45914	135.92	135.74	136.2	0	0.0031008	0.00011204	NaN	10.074	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13705000			21822	4546	15811	15922							0.10356363550909009
ILIEHLYGL	9	Unmodified	_ILIEHLYGL_					0	0	0		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	A375_MHC_IP_R1	1	536.2167358398438	2	535.815867	1069.61718	-0.57339	-0.00030723	0.19502	0.0001045	-0.37837	-0.00020274	535.816226165925	105.78	1.0208	105.78	105.55	106.57	0					32	19	3	0	0	0	0.14105	1	38880	38880		60.39	24.345	1	2512500			21823	3844	15812	15923	21390	21390					0.08515790516798916
ILIEHLYGL	9	Unmodified	_ILIEHLYGL_					0	0	0		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	A375_MHC_IP_R2	2	535.1321411132812	2	535.815867	1069.61718	-0.79051	-0.00042357	-0.78126	-0.00041861	-1.5718	-0.00084218	535.8158336342502	104.89	0.71191	105.65	105.36	106.07	0.76308					24	13	3	0	0	0	0.60012	1	39601	39601		12.532	0	1	1797300			21824	3844	15812	15923	21391	21391					0.08515790516798916
ILIFKDKIS	9	Unmodified	_ILIFKDKIS_					0	0	0			REV__tr|U7STH5|U7STH5_FUSNUCRP/FNRfamilytranscriptionalregulator,anaerobicregulatoryproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01058PE=4SV=1	REV__tr|U7STH5|U7STH5_FUSNUCRP/FNRfamilytranscriptionalregulator,anaerobicregulatoryproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01058PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	359.9618835449219	3	359.561987	1075.66413	-0.088211	-3.1717E-05	-0.17629	-6.3387E-05	-0.2645	-9.5104E-05	359.56186805902894	68.36	0.35423	69.095	68.867	69.221	0.73511					12	6	2	0	0	0	0.67483	1	25923	25923		6.6304	0	1	1931300	+		21825	28485	15813	15924	21392	21392					0.12932650067932627
ILIKHLVKV	9	Unmodified	_ILIKHLVKV_					0	0	0		ENSG00000165895|ENST00000298815|ARHGAP42	ENSG00000165895|ENST00000298815|ARHGAP42	ENSG00000165895|ENST00000298815|ARHGAP42	MULTI-MSMS	A375_MHC_IP_R2	2	355.318115234375	3	354.918105	1061.73249	-0.13398	-4.7553E-05	0.23766	8.4348E-05	0.10367	3.6795E-05	354.9180963770834	42.938	0.35336	43.71	43.573	43.926	0.7724					15	6	3	0	0	0	0.65748	1	16013	16013		10.8	3.1906	1	2530300			21826	6999	15814	15925	21393	21393					0.20408939438448215
ILIKLLTKIK	10	Unmodified	_ILIKLLTKIK_					0	0	0			REV__tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1	REV__tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1	MSMS	A375_MHC_IP_R1	1	591.9964599609375	2	591.931035	1181.84752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.858	1	83.858	83.358	84.358	0								0	0	0	0.15642	1	30695	30695		0	0	1		+		21827	28224	15815	15926	21394	21394					0.2638662384958934
ILILDLLVWL	10	Unmodified	_ILILDLLVWL_					0	0	0		nc|ENSG00000290584|Q9P1P4|TAAR3P	nc|ENSG00000290584|Q9P1P4|TAAR3P	nc|ENSG00000290584|Q9P1P4|TAAR3P	MSMS	A375_MHC_IP_R2	2	404.2620849609375	3	404.265171	1209.77368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.101	1	67.837	67.337	68.337	0.73631								0	0	0	0.15618	1	25420	25420		0.77653	0.078866	1				21828	14954	15816	15927	21395	21395					0.1771865568728117
ILIPQDGDY	9	Unmodified	_ILIPQDGDY_					0	0	0		ENSG00000112186|ENST00000229922|CAP2;nc|ENSG00000112186|P40123-2|CAP2;nc|ENSG00000112186|P40123-3|CAP2	ENSG00000112186|ENST00000229922|CAP2	ENSG00000112186|ENST00000229922|CAP2	MULTI-MSMS	A375_MHC_IP_R1	1	1033.682373046875	1	1033.52005	1032.51278	0.28838	0.00029805	0.2331	0.00024091	0.52148	0.00053896	1033.5192752725752	105.57	1.5294	105.57	105.25	106.78	0					59	29	3	0	0	0	0.55818	1	38678	38678		16.942	0.79319	1	18827000			21829	3058	15817	15928	21396	21396					-0.00217956030564892
ILIRFIVVV	9	Unmodified	_ILIRFIVVV_					0	0	0			REV__GJD2|p.G132Afs*13|1|0.23|ENSG00000159248|chr15:34753031-34753049|CCCCCACCACTGCCCCCAC/-|frameshift_variant	REV__GJD2|p.G132Afs*13|1|0.23|ENSG00000159248|chr15:34753031-34753049|CCCCCACCACTGCCCCCAC/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	536.7051391601562	2	536.36807	1070.72159	-0.80971	-0.0004343	0.35276	0.00018921	-0.45695	-0.00024509	536.8698317354567	46.034	0.45504	46.8	46.603	47.058	0.76519					19	8	3	0	0	0	0.75466	1	17201	17201		7.9102	3.1541	1	4664700	+		21830	20108	15818	15929	21397	21397					0.18905537064188138
ILIRYEPQL	9	Unmodified	_ILIRYEPQL_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-SECPEP	A375_MHC_IP_R1	1	573.23974609375	2	572.839874	1143.66519	-0.17967	-0.00010292	-0.27841	-0.00015948	-0.45807	-0.0002624	572.8398241176766	81.732	0.70862	81.732	81.353	82.062	0					28	13	3	0	0	0	0.11849	1	29875	29875		70.332	18.702	1	5105000			21831	1971	15819	15930	21398	21398					0.09910864436847078
ILIRYEPQL	9	Unmodified	_ILIRYEPQL_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-SECPEP	A375_MHC_IP_R2	2	573.239501953125	2	572.839874	1143.66519	-0.33672	-0.00019289	-2.1111	-0.0012093	-2.4479	-0.0014022	572.8394797538523	80.891	0.91848	81.636	81.112	82.03	0.74473					31	17	3	0	0	0	0.13208	1	30704	30704		66.457	12.624	1	4310500			21832	1971	15819	15930	21399	21399					0.09910864436847078
ILISEDDSAD	10	Unmodified	_ILISEDDSAD_					0	0	0			REV__ZZZ3|p.P783L|1|0.43|ENSG00000036549|chr1:77568450-77568450|G/A|missense_variant	REV__ZZZ3|p.P783L|1|0.43|ENSG00000036549|chr1:77568450-77568450|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	539.6519775390625	2	539.250951	1076.48735	-0.36038	-0.00019433	0.7325	0.000395	0.37212	0.00020067	539.251427587817	126.38	0.90994	126.38	126	126.91	0					34	17	3	0	0	0	0.11068	1	48240	48240		61.357	15.337	1	46721000	+		21833	29063	15820	15931	21400	21400					-0.04783475343651844
ILISEDDSAD	10	Unmodified	_ILISEDDSAD_					0	0	0			REV__ZZZ3|p.P783L|1|0.43|ENSG00000036549|chr1:77568450-77568450|G/A|missense_variant	REV__ZZZ3|p.P783L|1|0.43|ENSG00000036549|chr1:77568450-77568450|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	538.710205078125	2	539.250951	1076.48735	-0.36038	-0.00019433	0.7325	0.000395	0.37212	0.00020067	539.251427587817	126.38	0.90994	126.38	126	126.91	0					34	17	3	0	0	0	0.64716	1	48222	48222		22.736	0	1	46721000	+		21834	29063	15820	15931	21401	21401					-0.04783475343651844
ILISEDDSAD	10	Unmodified	_ILISEDDSAD_					0	0	0			REV__ZZZ3|p.P783L|1|0.43|ENSG00000036549|chr1:77568450-77568450|G/A|missense_variant	REV__ZZZ3|p.P783L|1|0.43|ENSG00000036549|chr1:77568450-77568450|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	539.6516723632812	2	539.250951	1076.48735	-0.80692	-0.00043513	0.059113	3.1877E-05	-0.74781	-0.00040326	539.2509811935981	125.96	0.80956	126.26	125.97	126.78	0.2951					32	15	3	0	0	0	0.17045	1	49171	49171		52.268	14.117	1	54785000	+		21835	29063	15820	15931	21402	21402					-0.04783475343651844
ILISWVSTV	9	Unmodified	_ILISWVSTV_					0	0	0		ENSG00000134389|ENST00000256785|CFHR5	ENSG00000134389|ENST00000256785|CFHR5	ENSG00000134389|ENST00000256785|CFHR5	MSMS	A375_MHC_IP_R2	2	509.34710693359375	2	509.302593	1016.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.724	1	78.467	77.967	78.967	0.74293								0	0	0	0.14905	1	29514	29514		23.148	0	1				21836	4572	15821	15932	21403	21403					0.08300101625479783
ILIYCLGSQR	10	Unmodified	_ILIYCLGSQR_					0	0	0			REV__ENST00000428809.5_1_21:15516217-15516304:+|nuORF	REV__ENST00000428809.5_1_21:15516217-15516304:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	389.6178894042969	3	389.218115	1164.63251	-0.54226	-0.00021106	0.21577	8.3981E-05	-0.32649	-0.00012708	389.21814112387744	38.477	0.5078	39.252	38.997	39.504	0.77451					20	9	3	0	0	0	0.65751	1	14166	14166		16.566	1.3174	1	4022000	+		21837	24680	15822	15933	21404	21404					0.05678334042363531
ILIYERRL	8	Unmodified	_ILIYERRL_					0	0	0		ENST00000469537.1_1_1:156169397-156169535:+|nuORF	ENST00000469537.1_1_1:156169397-156169535:+|nuORF	ENST00000469537.1_1_1:156169397-156169535:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	360.27691650390625	3	359.225598	1074.65496	-0.090914	-3.2659E-05	-0.18259	-6.5593E-05	-0.27351	-9.8251E-05	359.22549794676314	36.385	0.61148	36.385	36.133	36.745	0					37	11	4	0	0	0	0.75801	1	12217	12217		18.146	2.4077	1	30084000			21838	12320	15823	15934	21405	21405					0.12062301502282935
ILKAHGKKGL	10	Unmodified	_ILKAHGKKGL_					0	0	0		CUL9|p.E1885K|1|0.26|ENSG00000112659|chr6:43213877-43213877|G/A|missense_variant	CUL9|p.E1885K|1|0.26|ENSG00000112659|chr6:43213877-43213877|G/A|missense_variant	CUL9|p.E1885K|1|0.26|ENSG00000112659|chr6:43213877-43213877|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	355.4598388671875	3	355.569476	1063.6866	-0.36881	-0.00013114	0.0072065	2.5624E-06	-0.36161	-0.00012858	355.90379519509656	41.483	0.30305	42.258	41.997	42.3	0.77451					10	5	3	0	0	0	0.94587	1	15299	15299		3.8763	3.8763	1	1026900			21839	685	15824	15935	21406	21406					0.15730294256240995
ILKDDINFK	9	Unmodified	_ILKDDINFK_					0	0	0			REV__tr|U7T237|U7T237_FUSNURibonucleaseGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00457PE=4SV=1	REV__tr|U7T237|U7T237_FUSNURibonucleaseGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00457PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	369.9363708496094	3	369.213246	1104.61791	0.062384	2.3033E-05	-0.13991	-5.1656E-05	-0.077523	-2.8623E-05	369.2132313281004	37.938	1.0711	38.713	38.33	39.401	0.77451					46	20	3	0	0	0	0.60982	1	14023	14023		14.405	3.6059	1	88839000	+		21840	28719	15825	15936	21407	21407					0.0697858516582528
ILKDGIHNV	9	Unmodified	_ILKDGIHNV_					0	0	0		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	A375_MHC_IP_R2	2	505.19512939453125	2	504.795466	1007.57638	-0.64652	-0.00032636	0.03241	1.6361E-05	-0.61411	-0.00031	504.7954622481358	27.581	0.35447	28.26	28.047	28.401	0.67857					10	6	2	0	0	0	0.20645	1	9491	9491		47.749	47.749	1	3041900			21841	3844	15826	15937	21408	21408					0.0728944919718515
ILKEDRKVL	9	Unmodified	_ILKEDRKVL_					0	0	0		tr|U7SJH4|U7SJH4_FUSNUInnermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02143PE=4SV=1	tr|U7SJH4|U7SJH4_FUSNUInnermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02143PE=4SV=1	tr|U7SJH4|U7SJH4_FUSNUInnermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02143PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	372.3045959472656	3	371.904524	1112.69174	-0.029674	-1.1036E-05	0.048762	1.8135E-05	0.019088	7.099E-06	371.90446702433724	33.952	0.35316	34.704	34.45	34.803	0.75225					15	6	3	0	0	0	0.55534	1	12182	12182		20.581	0.95498	1	4739700			21842	29452	15827	15938	21409	21409					0.13990553328176247
ILKFLKKKKPE	11	Unmodified	_ILKFLKKKKPE_					0	0	0		ENSG00000196704|ENST00000359904|AMZ2;ENST00000578175.5_1_17:66246915-66252971:+|nuORF;ENST00000585050.5_1_17:66245218-66252971:+|nuORF;AMZ2|p.D182Vfs*8|1|0.18|ENSG00000196704|chr17:68251137-68251149|ACTCGTGGAATTT/-|frameshift_variant;ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2	ENSG00000196704|ENST00000359904|AMZ2	ENSG00000196704|ENST00000359904|AMZ2	MULTI-SECPEP	A375_MHC_IP_R1	1	685.6914672851562	2	686.457948	1370.90134	-0.82976	-0.0005696	-2.7448	-0.0018842	-3.5746	-0.0024538	686.4539719040938	85.714	0.15172	85.714	85.616	85.768	0					4	2	2	0	0	0	1.0008	1	31424	31424		1.3295	0.87119	1	1146700			21843	9078	15828	15939	21410	21410					0.23072796281303454
ILKKLKILY	9	Unmodified	_ILKKLKILY_					0	0	0			REV__ENSG00000013293|ENST00000231706|SLC7A14	REV__ENSG00000013293|ENST00000231706|SLC7A14	MSMS	A375_MHC_IP_R1	1	566.354248046875	2	566.396828	1130.7791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.187	1	76.187	75.687	76.687	0								0	0	0	0.15486	1	27768	27768		2.3027	1.7012	1		+		21844	16229	15829	15940	21411	21411					0.21894379269747333
ILKKMKKKK	9	Unmodified	_ILKKMKKKK_					0	0	0		ENST00000368346.7_1_1:155305486-155305633:-|nuORF	ENST00000368346.7_1_1:155305486-155305633:-|nuORF	ENST00000368346.7_1_1:155305486-155305633:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	573.3713989257812	2	572.901754	1143.78896	-0.33037	-0.00018927	3.3842	0.0019388	3.0539	0.0017496	573.4046250053975	65.072	0.30267	65.072	64.903	65.206	0					6	5	2	0	0	0	0.75251	1	23573	23573		2.3027	1.7012	1	1200900			21845	11111	15830	15941	21412	21412					0.22281244003465872
ILKKYRKFKEY	11	Unmodified	_ILKKYRKFKEY_					0	0	0		tr|U7STJ0|U7STJ0_FUSNUThreonine/SerineexporterThrEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01362PE=3SV=1	tr|U7STJ0|U7STJ0_FUSNUThreonine/SerineexporterThrEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01362PE=3SV=1	tr|U7STJ0|U7STJ0_FUSNUThreonine/SerineexporterThrEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01362PE=3SV=1	MSMS	A375_MHC_IP_R1	1	758.6212158203125	2	758.455936	1514.89732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.41	1	144.41	143.91	144.91	0								0	0	0	0.16354	1	55380	55380		0.30703	0.30703	1				21846	29697	15831	15942	21413	21413					0.16046706787597032
ILKLKLALS	9	Unmodified	_ILKLKLALS_					0	0	0		ENST00000225831.4_1_17:32582309-32582372:+|nuORF	ENST00000225831.4_1_17:32582309-32582372:+|nuORF	ENST00000225831.4_1_17:32582309-32582372:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	500.25128173828125	2	499.852253	997.689953	-0.86231	-0.00043103	0.062336	3.1159E-05	-0.79997	-0.00039987	499.8520541044804	60.421	0.40932	61.166	60.955	61.364	0.74503					12	7	2	0	0	0	0.56537	1	22901	22901		29.082	3.6823	1	1322200			21847	10118	15832	15943	21414	21414					0.1910154431020601
ILKLWILTKL	10	Unmodified	_ILKLWILTKL_					0	0	0		ENST00000477938.5_1_1:219352746-219385067:+|nuORF;ENST00000474379.5_1_1:219347271-219385067:+|nuORF;nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1;ENSG00000143353|ENST00000366928|LYPLAL1;ENST00000463964.5_1_1:219347256-219385067:+|nuORF	ENST00000477938.5_1_1:219352746-219385067:+|nuORF	ENST00000477938.5_1_1:219352746-219385067:+|nuORF	MSMS	A375_MHC_IP_R1	1	414.2826232910156	3	414.284565	1239.83187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.31	1	143.31	142.81	143.81	0								0	0	0	0.15638	1	54981	54981		0.12286	0.028024	1				21848	5373	15833	15944	21415	21415					0.22154337332540308
ILKNPEVKL	9	Unmodified	_ILKNPEVKL_					0	0	0		ENST00000480957.6_2_3:49456386-49456881:-|nuORF;ENST00000465925.6_2_3:49454975-49456881:-|nuORF;nc|ENSG00000145020|P48728-2|AMT;nc|ENSG00000145020|P48728-3|AMT;nc|ENSG00000145020|P48728-4|AMT;ENSG00000145020|ENST00000273588|AMT	ENST00000480957.6_2_3:49456386-49456881:-|nuORF	ENST00000480957.6_2_3:49456386-49456881:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	352.29364013671875	3	351.893737	1052.65938	-0.16491	-5.803E-05	-0.041231	-1.4509E-05	-0.20614	-7.2539E-05	351.89376504697543	19.769	0.50802	19.769	19.571	20.079	0					14	9	2	0	0	0	0.46465	1	5003	5003		15.739	0.78146	1	1390000			21849	12252	15834	15945	21416	21416					0.13515765925171763
ILKRTAITI	9	Unmodified	_ILKRTAITI_					0	0	0		nc|ENSG00000154438|Q8WWH4-2|ASZ1;ENSG00000154438|ENST00000284629|ASZ1	nc|ENSG00000154438|Q8WWH4-2|ASZ1	nc|ENSG00000154438|Q8WWH4-2|ASZ1	MULTI-SECPEP	A375_MHC_IP_R2	2	515.244384765625	2	514.844959	1027.67537	-0.91645	-0.00047183	0.0812	4.1806E-05	-0.83525	-0.00043002	514.8449458924799	65.561	0.71245	66.299	66.018	66.731	0.73811					26	13	3	0	0	0	0.24324	1	24821	24821		45.7	0	1	7955500			21850	6087	15835	15946	21417	21417					0.16263472162063408
ILLDAHYHV	9	Unmodified	_ILLDAHYHV_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	MULTI-MSMS	A375_MHC_IP_R1	1	361.265869140625	3	360.86607	1079.57638	0.17959	6.4809E-05	-0.29809	-0.00010757	-0.1185	-4.2761E-05	360.8659018605561	57.32	0.81447	57.32	57.007	57.822	0					43	15	4	0	0	0	0.32092	1	20510	20510		29.082	29.082	1	22362000			21851	8491	15836	15947	21418	21418					0.039774491971684256
ILLDERGQIKL	11	Unmodified	_ILLDERGQIKL_					0	0	0		ENST00000468058.1_1_19:7975099-7977313:+|nuORF;ENSG00000076984|ENST00000397979|MAP2K7;nc|ENSG00000076984|O14733-4|MAP2K7;nc|ENSG00000076984|O14733-3|MAP2K7;nc|ENSG00000076984|O14733-2|MAP2K7	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	433.62298583984375	3	433.266122	1296.77654	0.011819	5.1207E-06	0.12905	5.5912E-05	0.14087	6.1033E-05	433.26610833686385	72.262	0.60712	72.262	72.018	72.625	0					21	11	3	0	0	0	0.43802	2	26281	26281;26325		35.996	7.8145	1	3166400			21852	1642	15837	15948	21419;21420	21419					0.14001879074135104
ILLDERGQIKL	11	Unmodified	_ILLDERGQIKL_					0	0	0		ENST00000468058.1_1_19:7975099-7977313:+|nuORF;ENSG00000076984|ENST00000397979|MAP2K7;nc|ENSG00000076984|O14733-4|MAP2K7;nc|ENSG00000076984|O14733-3|MAP2K7;nc|ENSG00000076984|O14733-2|MAP2K7	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	433.6656799316406	3	433.266122	1296.77654	-0.49017	-0.00021237	-0.086069	-3.7291E-05	-0.57624	-0.00024966	433.266035955374	71.333	0.60801	72.067	71.857	72.465	0.73421					16	11	2	0	0	0	0.43802	2	27063	27063;27110		35.996	7.8145	1	3430300			21853	1642	15837	15948	21421;21422	21421					0.14001879074135104
ILLDHEKEWKL	11	Unmodified	_ILLDHEKEWKL_					0	0	0		ENSG00000113643|ENST00000231572|RARS1;nc|ENSG00000113643|P54136-2|RARS1	ENSG00000113643|ENST00000231572|RARS1	ENSG00000113643|ENST00000231572|RARS1	MULTI-MSMS	A375_MHC_IP_R1	1	475.6697692871094	3	475.269643	1422.7871	-0.48305	-0.00022958	-0.11764	-5.5911E-05	-0.60069	-0.00028549	475.26995800248136	63.504	0.56305	63.504	63.223	63.786	0					27	10	4	0	0	0	0.45484	1	22963	22963		34.674	19.135	1	3523100			21854	3170	15838	15949	21423	21423					0.09261861728555232
ILLDHEKEWKL	11	Unmodified	_ILLDHEKEWKL_					0	0	0		ENSG00000113643|ENST00000231572|RARS1;nc|ENSG00000113643|P54136-2|RARS1	ENSG00000113643|ENST00000231572|RARS1	ENSG00000113643|ENST00000231572|RARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	357.10394287109375	4	356.704052	1422.7871	0.065566	2.3388E-05	-0.43941	-0.00015674	-0.37384	-0.00013335	356.7039385626138	63.505	0.76584	63.505	63.173	63.939	0					29	14	4	0	0	0	0.99711	1	22946	22946		7.4291	6.5841	1	3966800			21855	3170	15838	15949	21424	21424					0.09261861728555232
ILLDHEKEWKL	11	Unmodified	_ILLDHEKEWKL_					0	0	0		ENSG00000113643|ENST00000231572|RARS1;nc|ENSG00000113643|P54136-2|RARS1	ENSG00000113643|ENST00000231572|RARS1	ENSG00000113643|ENST00000231572|RARS1	MULTI-MSMS	A375_MHC_IP_R2	2	475.669677734375	3	475.269643	1422.7871	-0.62411	-0.00029662	0.64148	0.00030488	0.017371	8.2559E-06	475.2703375472819	62.571	0.91198	63.314	62.622	63.534	0.74263					36	17	4	0	0	0	0.45484	1	23681	23681		34.674	19.135	1	5026900			21856	3170	15838	15949	21425	21425					0.09261861728555232
ILLDHEKEWKL	11	Unmodified	_ILLDHEKEWKL_					0	0	0		ENSG00000113643|ENST00000231572|RARS1;nc|ENSG00000113643|P54136-2|RARS1	ENSG00000113643|ENST00000231572|RARS1	ENSG00000113643|ENST00000231572|RARS1	MULTI-MSMS	A375_MHC_IP_R2	2	357.3545227050781	4	356.704052	1422.7871	-0.28166	-0.00010047	-0.089706	-3.1999E-05	-0.37136	-0.00013247	356.70395702035626	62.552	0.50613	63.294	63.028	63.534	0.74263					25	9	3	0	0	0	0.42581	1	23697	23697		36.955	25.324	1	4375700			21857	3170	15838	15949	21426	21426					0.09261861728555232
ILLDLTDNRL	10	Unmodified	_ILLDLTDNRL_					0	0	0		nc|ENSG00000156535|Q6YHK3-2|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	MULTI-SECPEP	A375_MHC_IP_R1	1	594.0614624023438	2	593.34552	1184.67649	-0.30694	-0.00018212	0.035316	2.0955E-05	-0.27163	-0.00016117	593.3455213458443	101.28	0.75939	101.28	100.94	101.7	0					33	14	3	0	0	0	0.57412	1	37169	37169		43.982	9.5801	1	7997700			21858	6199	15839	15950	21427	21427					0.09153641740317653
ILLDLTDNRL	10	Unmodified	_ILLDLTDNRL_					0	0	0		nc|ENSG00000156535|Q6YHK3-2|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	MULTI-SECPEP	A375_MHC_IP_R2	2	593.7452392578125	2	593.34552	1184.67649	-0.3824	-0.0002269	0.24347	0.00014446	-0.13894	-8.2438E-05	593.3455492391518	100.48	0.92323	101.24	100.98	101.9	0.76278					36	17	4	0	0	0	0.24721	1	38076	38076		57.249	15.409	1	8188100			21859	6199	15839	15950	21428	21428					0.09153641740317653
ILLDNDHYAM	10	Unmodified	_ILLDNDHYAM_					0	0	0		ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2	ENSG00000102910|ENST00000285737|LONP2	ENSG00000102910|ENST00000285737|LONP2	MULTI-MSMS	A375_MHC_IP_R1	1	603.1867065429688	2	602.786981	1203.55941	-0.24444	-0.00014734	-0.022875	-1.3789E-05	-0.26731	-0.00016113	602.7869218773739	72.607	0.60813	72.607	72.372	72.98	0					22	11	3	0	0	0	0.056042	1	26422	26422		74.2	47.316	1	4921000			21860	2402	15840	15951	21429	21429					-0.03422839470931649
ILLDNDHYAM	10	Unmodified	_ILLDNDHYAM_					0	0	0		ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2	ENSG00000102910|ENST00000285737|LONP2	ENSG00000102910|ENST00000285737|LONP2	MULTI-MSMS	A375_MHC_IP_R2	2	603.186279296875	2	602.786981	1203.55941	-0.74015	-0.00044615	-0.27507	-0.00016581	-1.0152	-0.00061196	602.7867052855175	71.858	0.50677	72.593	72.364	72.871	0.73421					22	9	3	0	0	0	0.0040472	2	27261	27261;27273		100.09	57.039	1	5838800			21861	2402	15840	15951	21430;21431	21430					-0.03422839470931649
ILLDNDHYAM	10	Oxidation (M)	_ILLDNDHYAM(Oxidation (M))_		ILLDNDHYAM(1)		ILLDNDHYAM(90)	0	0	1		ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2	ENSG00000102910|ENST00000285737|LONP2	ENSG00000102910|ENST00000285737|LONP2	MULTI-SECPEP	A375_MHC_IP_R1	1	611.1844482421875	2	610.784438	1219.55432	-0.18641	-0.00011386	0.20811	0.00012711	0.021696	1.3251E-05	610.7846553297819	51.931	0.71212	51.931	51.575	52.287	0					27	13	3	0	0	0	0.039352	1	18405	18405		90.135	90.135	1	5411800			21862	2402	15840	15952	21432	21432		105			-0.04667143333563217
ILLDNDHYAM	10	Oxidation (M)	_ILLDNDHYAM(Oxidation (M))_		ILLDNDHYAM(1)		ILLDNDHYAM(93)	0	0	1		ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2	ENSG00000102910|ENST00000285737|LONP2	ENSG00000102910|ENST00000285737|LONP2	MULTI-SECPEP	A375_MHC_IP_R2	2	611.18408203125	2	610.784438	1219.55432	-0.64004	-0.00039093	-0.06857	-4.1881E-05	-0.70861	-0.00043281	610.7845293771713	51.188	0.60713	51.94	51.663	52.27	0.75225					28	11	3	0	0	0	0.060993	1	19241	19241		92.653	71.116	1	7373600			21863	2402	15840	15952	21433	21433		105			-0.04667143333563217
ILLDNEFHV	9	Unmodified	_ILLDNEFHV_					0	0	0		RIPK2|p.N151K|1|0.35|ENSG00000104312|chr8:89765466-89765466|T/A|missense_variant;nc|ENSG00000104312|O43353-2|RIPK2;ENST00000522965.1_1_8:90770176-90802641:+|nuORF;ENSG00000104312|ENST00000220751|RIPK2	RIPK2|p.N151K|1|0.35|ENSG00000104312|chr8:89765466-89765466|T/A|missense_variant	RIPK2|p.N151K|1|0.35|ENSG00000104312|chr8:89765466-89765466|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	550.6168212890625	2	550.292756	1098.57096	-0.68304	-0.00037587	0.48589	0.00026738	-0.19716	-0.00010849	550.2932708839328	94.533	0.40982	94.533	94.241	94.651	0					13	7	2	0	0	0	0.11715	1	34689	34689		52.268	8.4101	1	1339600			21864	29082	15841	15953	21434	21434					0.025617256147143053
ILLDRLLY	8	Unmodified	_ILLDRLLY_					0	0	0		ENSG00000143303|ENST00000368216|METTL25B	ENSG00000143303|ENST00000368216|METTL25B	ENSG00000143303|ENST00000368216|METTL25B	MULTI-SECPEP	A375_MHC_IP_R2	2	509.6840515136719	2	509.81841	1017.62227	-0.70139	-0.00035758	-0.10306	-5.2544E-05	-0.80445	-0.00041013	509.8184654457177	105.08	1.0182	105.84	105.56	106.58	0.76308					48	19	4	0	0	0	0.78043	1	39951	39951		40.449	10.224	1	23500000			21865	5366	15842	15954	21435	21435					0.11416094379410424
ILLDRLLYL	9	Unmodified	_ILLDRLLYL_					0	0	0		ENSG00000143303|ENST00000368216|METTL25B	ENSG00000143303|ENST00000368216|METTL25B	ENSG00000143303|ENST00000368216|METTL25B	MULTI-MSMS	A375_MHC_IP_R1	1	566.76123046875	2	566.360442	1130.70633	-0.3421	-0.00019375	0.37531	0.00021256	0.033212	1.881E-05	566.360768190308	128.68	0.35608	128.68	128.53	128.89	0					14	6	3	0	0	0	0.048392	1	49433	49433		79.596	23.419	1	11823000			21866	5366	15843	15955	21436	21436					0.1462062547630012
ILLEHKVVL	9	Unmodified	_ILLEHKVVL_					0	0	0		nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	MULTI-MSMS	A375_MHC_IP_R1	1	355.6340026855469	3	355.233982	1062.68012	-0.015722	-5.585E-06	0.14273	5.0702E-05	0.12701	4.5117E-05	355.2339952938919	60.286	0.91645	60.286	60.006	60.922	0					29	17	3	0	0	0	0.22013	1	21690	21690		36.506	11.515	1	5541300			21867	2935	15844	15956	21437	21437					0.15128356304853696
ILLEHKVVL	9	Unmodified	_ILLEHKVVL_					0	0	0		nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	MULTI-SECPEP	A375_MHC_IP_R1	1	532.747314453125	2	532.347335	1062.68012	-0.62087	-0.00033052	0.52191	0.00027784	-0.09896	-5.2681E-05	532.3475256118336	60.286	0.35521	60.286	60.109	60.464	0					9	6	2	0	0	0	0.5212	1	21737	21737		20.415	2.2682	1	1645400			21868	2935	15844	15956	21438	21438					0.15128356304853696
ILLEHKVVL	9	Unmodified	_ILLEHKVVL_					0	0	0		nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	MULTI-MSMS	A375_MHC_IP_R2	2	355.633544921875	3	355.233982	1062.68012	-0.62558	-0.00022223	-0.11413	-4.0541E-05	-0.7397	-0.00026277	355.2338290298473	59.224	0.70832	59.971	59.641	60.349	0.74714					28	13	3	0	0	0	0.22013	1	22401	22401		36.506	11.515	1	4626300			21869	2935	15844	15956	21439	21439					0.15128356304853696
ILLEHKVVL	9	Unmodified	_ILLEHKVVL_					0	0	0		nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	MULTI-SECPEP	A375_MHC_IP_R2	2	532.16845703125	2	532.347335	1062.68012	-1.1092	-0.0005905	0.17423	9.275E-05	-0.93501	-0.00049775	532.849012145314	59.178	0.3046	59.925	59.793	60.098	0.74714					8	5	2	0	0	0	0.63327	1	22420	22420		18.146	0	1	1356800			21870	2935	15844	15956	21440	21440					0.15128356304853696
ILLEHNYAL	9	Unmodified	_ILLEHNYAL_					0	0	0		ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	MULTI-SECPEP	A375_MHC_IP_R1	1	543.6593627929688	2	543.303124	1084.5917	-0.58549	-0.0003181	-0.83448	-0.00045338	-1.42	-0.00077147	543.3023680052265	74.564	0.4563	74.564	74.247	74.704	0					13	8	2	0	0	0	0.24324	1	27129	27129		53.833	21.527	1	1344400			21871	2076	15845	15957	21441	21441					0.05278315994382865
ILLEHNYAL	9	Unmodified	_ILLEHNYAL_					0	0	0		ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	MULTI-SECPEP	A375_MHC_IP_R2	2	543.7025146484375	2	543.303124	1084.5917	-0.78156	-0.00042462	-0.22003	-0.00011954	-1.0016	-0.00054417	543.3027473774288	73.647	0.66304	74.382	74.091	74.754	0.73541					16	12	2	0	0	0	0.37663	1	27972	27972		43.772	16.889	1	1728500			21872	2076	15845	15957	21442	21442					0.05278315994382865
ILLERIDI	8	Unmodified	_ILLERIDI_					0	0	0			REV__tr|U7T534|U7T534_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00290PE=4SV=1	REV__tr|U7T534|U7T534_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00290PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	492.16314697265625	2	492.808042	983.601532	-0.51369	-0.00025315	-0.53614	-0.00026422	-1.0498	-0.00051737	492.8077379548698	77.14	0.66052	77.883	77.555	78.216	0.74293					17	12	2	0	0	0	0.87643	1	29213	29213		19.257	3.4098	1	2052200	+		21873	28816	15846	15958	21443	21443					0.10907503999760593
ILLETELEK	9	Unmodified	_ILLETELEK_					0	0	0		FBXO10|p.W704L|1|0.12|ENSG00000147912|chr9:37521658-37521658|C/A|missense_variant	FBXO10|p.W704L|1|0.12|ENSG00000147912|chr9:37521658-37521658|C/A|missense_variant	FBXO10|p.W704L|1|0.12|ENSG00000147912|chr9:37521658-37521658|C/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	544.6778564453125	2	544.315897	1086.61724	-0.56238	-0.00030611	-0.81697	-0.00044469	-1.3793	-0.0007508	544.3153969226016	74.979	0.50781	74.979	74.704	75.211	0					22	9	3	0	0	0	0.58271	1	27263	27263		20.454	10.38	1	2233300			21874	13984	15847	15959	21444	21444					0.07739745726144065
ILLFVCYY	8	Unmodified	_ILLFVCYY_					0	0	0		ENSG00000176988|ENST00000370467|FMR1NB	ENSG00000176988|ENST00000370467|FMR1NB	ENSG00000176988|ENST00000370467|FMR1NB	MSMS	A375_MHC_IP_R1	1	517.2188720703125	2	517.274989	1032.53543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.719	1	80.719	80.219	81.219	0								0	0	0	0.16876	1	29489	29489		17.087	3.1805	1				21875	8051	15848	15960	21445	21445					0.020459718333540877
ILLFVCYY	8	Unmodified	_ILLFVCYY_					0	0	0		ENSG00000176988|ENST00000370467|FMR1NB	ENSG00000176988|ENST00000370467|FMR1NB	ENSG00000176988|ENST00000370467|FMR1NB	MSMS	A375_MHC_IP_R1	1	517.2314453125	2	517.274989	1032.53543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.788	1	80.788	80.288	81.288	0								0	0	0	0.16876	1	29515	29515		17.087	3.1805	1				21876	8051	15848	15960	21446	21446					0.020459718333540877
ILLGKVQQL	9	Unmodified	_ILLGKVQQL_					0	0	0		nc|ENSG00000141030|Q9UNS2-2|COPS3;ENSG00000141030|ENST00000268717|COPS3	nc|ENSG00000141030|Q9UNS2-2|COPS3	nc|ENSG00000141030|Q9UNS2-2|COPS3	MULTI-SECPEP	A375_MHC_IP_R2	2	506.7311706542969	2	506.331685	1010.64882	-0.63075	-0.00031937	1.4386	0.00072843	0.80789	0.00040906	506.8342374557229	68.929	0.86116	69.664	69.323	70.184	0.73511					36	16	3	0	0	0	0.030624	1	26179	26179		100.37	100.37	1	7521100			21877	5210	15849	15961	21447	21447					0.14391783270752967
ILLGNYCVAV	10	Unmodified	_ILLGNYCVAV_					0	0	0		ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1;ENST00000379514.2_1_9:33503785-33510678:-|nuORF	ENSG00000165416|ENST00000310528|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	MULTI-SECPEP	A375_MHC_IP_R2	2	532.6529541015625	2	532.794078	1063.5736	-0.6473	-0.00034488	-1.4447	-0.00076974	-2.092	-0.0011146	532.7933582309018	88.353	0.7077	89.084	88.774	89.482	0.7318					19	13	2	0	0	0	0.76414	1	33638	33638		10.074	0	1	1213800			21878	6949	15850	15962	21448	21448					0.04435857748012495
ILLHLESEL	9	Unmodified	_ILLHLESEL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000402024.2_1_6:116778703-116778877:-|nuORF;ENST00000506277.1_1_5:36886275-36886596:+|nuORF;ENST00000395181.2_1_2:190176192-190176438:-|nuORF;ENST00000452408.1_1_6:28937132-28937360:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-SECPEP	A375_MHC_IP_R1	1	534.2108764648438	2	533.810782	1065.60701	-0.54084	-0.00028871	0.44592	0.00023804	-0.094921	-5.067E-05	533.8109655554197	93.312	0.76553	93.312	93.023	93.789	0					28	14	3	0	0	0	0.033126	1	34303	34303		85.357	37.011	1	3654600			21879	2963	15851	15963	21449	21449					0.07683182791583931
ILLHLESEL	9	Unmodified	_ILLHLESEL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000402024.2_1_6:116778703-116778877:-|nuORF;ENST00000506277.1_1_5:36886275-36886596:+|nuORF;ENST00000395181.2_1_2:190176192-190176438:-|nuORF;ENST00000452408.1_1_6:28937132-28937360:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-SECPEP	A375_MHC_IP_R2	2	534.21044921875	2	533.810782	1065.60701	-0.68103	-0.00036354	-0.01434	-7.6547E-06	-0.69537	-0.00037119	533.8106997439899	92.42	0.55609	93.159	92.836	93.392	0.73902					21	10	3	0	0	0	0.043556	1	35124	35124		77.984	31.963	1	2815200			21880	2963	15851	15963	21450	21450					0.07683182791583931
ILLKDILSV	9	Unmodified	_ILLKDILSV_					0	0	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	A375_MHC_IP_R1	1	507.73443603515625	2	507.333893	1012.65323	-0.38671	-0.00019619	0.35243	0.0001788	-0.034279	-1.7391E-05	507.33392631064004	118.75	1.0131	118.75	118.42	119.44	0					35	19	3	0	0	0	0.0037351	1	43776	43776		137.42	24.831	1	26584000			21881	5800	15852	15964	21451	21451					0.14741247693666537
ILLKDILSV	9	Unmodified	_ILLKDILSV_					0	0	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	A375_MHC_IP_R2	2	507.7328186035156	2	507.333893	1012.65323	-0.62451	-0.00031683	-0.36162	-0.00018346	-0.98613	-0.00050029	507.33370344388	117.8	0.60746	118.41	118.09	118.69	0.60909					19	11	2	0	0	0	0.0037351	1	44637	44637		137.42	16.973	1	29733000			21882	5800	15852	15964	21452	21452					0.14741247693666537
ILLLLLKVY	9	Unmodified	_ILLLLLKVY_					0	0	0		CD244|p.T7S|1|0.33|ENSG00000122223|chr1:160862659-160862659|T/A|missense_variant;CD244|p.G19S|1|0.1|ENSG00000122223|chr1:160862623-160862623|C/T|missense_variant;nc|ENSG00000122223|Q9BZW8-4|CD244;nc|ENSG00000122223|Q9BZW8-3|CD244;ENSG00000122223|ENST00000368034|CD244;nc|ENSG00000122223|Q9BZW8|CD244	CD244|p.T7S|1|0.33|ENSG00000122223|chr1:160862659-160862659|T/A|missense_variant	CD244|p.T7S|1|0.33|ENSG00000122223|chr1:160862659-160862659|T/A|missense_variant	MSMS	A375_MHC_IP_R2	2	363.2582702636719	3	363.254494	1086.74165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.622	1	21.232	20.732	21.732	0.61029								0	0	0	0.15486	1	6435	6435		0.26902	0	1				21883	334	15853	15965	21453	21453					0.20175288004134018
ILLMFLAIYYL	11	Unmodified	_ILLMFLAIYYL_					0	0	0		ENSG00000149488|ENST00000358864|TMC2	ENSG00000149488|ENST00000358864|TMC2	ENSG00000149488|ENST00000358864|TMC2	MULTI-MSMS	A375_MHC_IP_R1	1	458.669677734375	3	458.269816	1371.78762	-0.2721	-0.0001247	-0.30802	-0.00014116	-0.58012	-0.00026585	458.26969643443493	34.203	0.3019	34.203	34.001	34.303	0					14	5	3	0	0	0	0.73781	1	11274	11274		1.4551	0.24029	1	3645400			21884	5809	15854	15966	21454	21454					0.1165956512406865
ILLMFLAIYYL	11	Unmodified	_ILLMFLAIYYL_					0	0	0		ENSG00000149488|ENST00000358864|TMC2	ENSG00000149488|ENST00000358864|TMC2	ENSG00000149488|ENST00000358864|TMC2	MULTI-MATCH	A375_MHC_IP_R2	2		3	458.269816	1371.78762	-0.60129	-0.00027555	0.17386	7.9675E-05	-0.42743	-0.00019588	458.6040311930658	33.252	0.45835	34.004	33.789	34.247	0.75225	-0.0992	0.00038508	NaN	1.4551	20	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3455400			21885	5809	15854	15966							0.1165956512406865
ILLNCGLFFV	10	Unmodified	_ILLNCGLFFV_					0	0	0			REV__ENSG00000179673|ENST00000322329|RPRML	REV__ENSG00000179673|ENST00000322329|RPRML	MSMS	A375_MHC_IP_R2	2	569.7139892578125	2	569.820095	1137.62564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.136	1	87.869	87.369	88.369	0.733								0	0	0	0.14745	1	33137	33137		20.454	5.6154	1		+		21886	21575	15855	15967	21455	21455					0.06233021161756369
ILLNCLKRY	9	Unmodified	_ILLNCLKRY_					0	0	0			REV__nc|ENSG00000103723|Q13367-3|AP3B2	REV__nc|ENSG00000103723|Q13367-3|AP3B2	MULTI-SECPEP	A375_MHC_IP_R2	2	378.9497375488281	3	379.226722	1134.65834	-0.13085	-4.9624E-05	-0.091324	-3.4632E-05	-0.22218	-8.4256E-05	379.2268357562864	30.146	0.40581	30.865	30.557	30.962	0.71857					12	7	2	0	0	0	0.65527	1	10476	10476		12.241	7.7118	1	1047100	+		21887	17290	15856	15968	21456	21456					0.09639228284640922
ILLNNGVCYNY	11	Unmodified	_ILLNNGVCYNY_					0	0	0			REV__ENST00000521942.5_1_5:70344502-70358599:-|nuORF	REV__ENST00000521942.5_1_5:70344502-70358599:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	643.9834594726562	2	643.315906	1284.61726	-0.57006	-0.00036673	1.6998	0.0010935	1.1297	0.00072676	643.3170181019404	34.412	0.45404	34.412	34.203	34.657	0					12	8	2	0	0	0	0.99227	1	11345	11345		5.7319	0	1	1447500	+		21888	25724	15857	15969	21457	21457					-0.013665775454910545
ILLNNGVCYNY	11	Unmodified	_ILLNNGVCYNY_					0	0	0			REV__ENST00000521942.5_1_5:70344502-70358599:-|nuORF	REV__ENST00000521942.5_1_5:70344502-70358599:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	643.9832763671875	2	643.315906	1284.61726	-1.2326	-0.00079295	2.2062	0.0014193	0.97362	0.00062634	643.3172847913013	33.638	0.4037	34.39	34.196	34.6	0.75225					11	7	2	0	0	0	0.99227	1	12142	12142		9.3831	3.1773	1	1725800	+		21889	25724	15857	15969	21458	21458					-0.013665775454910545
ILLPGILGSA	10	Unmodified	_ILLPGILGSA_					0	0	0			REV__ENSG00000185010|ENST00000360256|F8	REV__ENSG00000185010|ENST00000360256|F8	MULTI-MSMS	A375_MHC_IP_R2	2	477.7051086425781	2	477.305136	952.595718	-0.52559	-0.00025087	0.64591	0.0003083	0.12032	5.7431E-05	477.30544811374193	73.889	0.6106	74.626	74.348	74.958	0.73752					22	11	3	0	0	0	0.33603	1	28067	28067		37.974	0	1	3969300	+		21890	21858	15858	15970	21459	21459					0.11752405488095974
ILLPGILGSA	10	Unmodified	_ILLPGILGSA_					0	0	0			REV__ENSG00000185010|ENST00000360256|F8	REV__ENSG00000185010|ENST00000360256|F8	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	477.305136	952.595718	-0.49537	-0.00023644	0.18519	8.8392E-05	-0.31018	-0.00014805	477.3051866264213	74.748	0.70967	74.748	74.502	75.211	0	0.060939	-0.00016871	NaN	37.974	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2757000	+		21891	21858	15858	15970							0.11752405488095974
ILLPIRVLL	9	Unmodified	_ILLPIRVLL_					0	0	0		ENSG00000087253|ENST00000262134|LPCAT2;LPCAT2|p.L491*|1|0.06|ENSG00000087253|chr16:55582920-55582921|-/TAAAAGTTTTGCC|frameshift_variant;ENST00000566911.1_1_16:55543042-55559560:+|nuORF	ENSG00000087253|ENST00000262134|LPCAT2	ENSG00000087253|ENST00000262134|LPCAT2	MULTI-MSMS	A375_MHC_IP_R2	2	525.775146484375	2	525.375895	1048.73724	-0.54884	-0.00028835	-0.84134	-0.00044202	-1.3902	-0.00073036	525.3754325962542	128.74	0.30222	128.98	128.76	129.06	0.23946					7	5	2	0	0	0	0.1478	1	50603	50603		42.095	6.0504	1	6860300			21892	1865	15859	15971	21460	21460					0.21481823581234494
ILLPRIIEA	9	Unmodified	_ILLPRIIEA_					0	0	0		nc|ENSG00000088836|Q8NBS3-5|SLC4A11;ENSG00000088836|ENST00000642402|SLC4A11;nc|ENSG00000088836|Q8NBS3-1|SLC4A11;nc|ENSG00000088836|Q8NBS3-4|SLC4A11;nc|ENSG00000088836|Q8NBS3-2|SLC4A11	nc|ENSG00000088836|Q8NBS3-5|SLC4A11	nc|ENSG00000088836|Q8NBS3-5|SLC4A11	MULTI-SECPEP	A375_MHC_IP_R1	1	519.7391357421875	2	519.33951	1036.66447	-0.46267	-0.00024028	0.10973	5.6987E-05	-0.35294	-0.0001833	519.3393885732352	101.27	0.4058	101.27	101.04	101.45	0					14	7	2	0	0	0	0.67539	1	37243	37243		16.149	3.9084	1	2005000			21893	1900	15860	15972	21461	21461					0.14760069787803332
ILLPRIIEA	9	Unmodified	_ILLPRIIEA_					0	0	0		nc|ENSG00000088836|Q8NBS3-5|SLC4A11;ENSG00000088836|ENST00000642402|SLC4A11;nc|ENSG00000088836|Q8NBS3-1|SLC4A11;nc|ENSG00000088836|Q8NBS3-4|SLC4A11;nc|ENSG00000088836|Q8NBS3-2|SLC4A11	nc|ENSG00000088836|Q8NBS3-5|SLC4A11	nc|ENSG00000088836|Q8NBS3-5|SLC4A11	MULTI-MSMS	A375_MHC_IP_R2	2	519.906982421875	2	519.33951	1036.66447	-0.47225	-0.00024526	-0.05834	-3.0298E-05	-0.53059	-0.00027556	519.3394487174133	100.26	0.46098	101.03	100.83	101.29	0.76278					15	8	2	0	0	0	0.57432	1	38054	38054		16.149	16.149	1	1419100			21894	1900	15860	15972	21462	21462					0.14760069787803332
ILLPRTVSL	9	Unmodified	_ILLPRTVSL_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-SECPEP	A375_MHC_IP_R1	1	505.6451416015625	2	506.331685	1010.64882	-0.075167	-3.8059E-05	1.7619	0.00089211	1.6867	0.00085405	506.8343020594026	70.044	0.6088	70.044	69.732	70.341	0					34	11	4	0	0	0	0.4261	1	25383	25383		18.146	0	1	6009300			21895	2325	15861	15973	21463	21463					0.14391783270752967
ILLPSVFGV	9	Unmodified	_ILLPSVFGV_					0	0	0		ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	MULTI-SECPEP	A375_MHC_IP_R1	1	473.1943359375	2	472.794404	943.574254	-0.69449	-0.00032835	0.085211	4.0287E-05	-0.60928	-0.00028806	472.79445875425586	132.82	0.4097	132.82	132.69	133.1	0					13	7	3	0	0	0	0.12259	1	51218	51218		44.407	10.305	1	13939000			21896	5021	15862	15974	21464	21464					0.10021020459385
ILLPSVFGV	9	Unmodified	_ILLPSVFGV_					0	0	0		ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	MULTI-SECPEP	A375_MHC_IP_R1	1	944.982421875	1	944.581531	943.574254	-0.23725	-0.0002241	-0.05211	-4.9222E-05	-0.28936	-0.00027332	944.5813722716019	132.82	1.3261	132.82	132.64	133.97	0					57	25	5	0	0	0	0.061132	1	51450	51450		57.471	15.377	1	355020000			21897	5021	15862	15974	21465	21465					0.10021020459385
ILLPSVFGV	9	Unmodified	_ILLPSVFGV_					0	0	0		ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	MULTI-MSMS	A375_MHC_IP_R2	2	944.9811401367188	1	944.581531	943.574254	-0.14141	-0.00013357	-0.30743	-0.00029039	-0.44884	-0.00042397	944.5811472575131	132.6	1.5254	132.79	132.3	133.83	0.18953					52	29	5	0	0	0	0.015336	1	52412	52412		89.427	35.851	1	276750000			21898	5021	15862	15974	21466	21466					0.10021020459385
ILLPSVFGV	9	Unmodified	_ILLPSVFGV_					0	0	0		ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	MULTI-SECPEP	A375_MHC_IP_R2	2	473.1939697265625	2	472.794404	943.574254	-0.51626	-0.00024409	-0.28684	-0.00013562	-0.8031	-0.0003797	472.7941917293352	132.6	0.30469	132.79	132.66	132.97	0.18953					14	5	4	0	0	0	0.28418	1	52181	52181		38.151	0	1	12509000			21899	5021	15862	15974	21467	21467					0.10021020459385
ILLPYVSKV	9	Unmodified	_ILLPYVSKV_					0	0	0		ENST00000515876.5_1_4:941527-949679:+|nuORF;ENSG00000127419|ENST00000264771|TMEM175;ENST00000506669.1_1_4:946199-949276:+|nuORF;ENST00000452360.6_1_4:942397-950358:+|nuORF;nc|ENSG00000127419|Q9BSA9-2|TMEM175	ENST00000515876.5_1_4:941527-949679:+|nuORF	ENST00000515876.5_1_4:941527-949679:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1310424804688	2	516.328611	1030.64267	-0.79236	-0.00040912	-0.078405	-4.0483E-05	-0.87076	-0.0004496	516.3284444898483	90.717	0.5598	90.717	90.488	91.048	0					23	10	3	0	0	0	0.10362	1	33367	33367		63.961	9.187	1	3382400			21900	4090	15863	15975	21468	21468					0.1285726503922433
ILLRRRRQRL	10	Unmodified	_ILLRRRRQRL_					0	0	0			REV__ENSG00000124302|ENST00000650847|CHST8	REV__ENSG00000124302|ENST00000650847|CHST8	MSMS	A375_MHC_IP_R1	1	690.6451416015625	2	690.462753	1378.91095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.59	1	128.59	128.09	129.09	0								0	0	0	0.15629	1	49405	49405		0.40072	0.093686	1		+		21901	18295	15864	15976	21469	21469					0.23665422130079605
ILLSKRKNVPV	11	Unmodified	_ILLSKRKNVPV_					0	0	0			REV__ST18|p.M59I|1|0.12|ENSG00000147488|chr8:52180222-52180222|C/T|missense_variant	REV__ST18|p.M59I|1|0.12|ENSG00000147488|chr8:52180222-52180222|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	633.9656982421875	2	633.916447	1265.81834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.51	1	108.26	107.76	108.76	0.75436								0	0	0	0.16331	1	40615	40615		1.4819	0.15237	1		+		21902	28051	15865	15977	21470	21470					0.19606479553294776
ILLSQTTGV	9	Unmodified	_ILLSQTTGV_					0	0	0		ENSG00000047410|ENST00000367478|TPR;nc|ENSG00000047410|P12270-2|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	A375_MHC_IP_R1	1	466.67620849609375	2	466.276575	930.538597	-0.24681	-0.00011508	-0.19732	-9.2005E-05	-0.44413	-0.00020709	466.2761140460389	75.337	0.50346	75.337	75.16	75.664	0					14	9	2	0	0	0	0.60101	1	27481	27481		14.838	0.93222	1	1523100			21903	1199	15866	15978	21471	21471					0.07054938211717854
ILLSQTTGV	9	Unmodified	_ILLSQTTGV_					0	0	0		ENSG00000047410|ENST00000367478|TPR;nc|ENSG00000047410|P12270-2|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-SECPEP	A375_MHC_IP_R2	2	466.6763000488281	2	466.276575	930.538597	-0.69494	-0.00032404	-0.099514	-4.6401E-05	-0.79446	-0.00037044	466.2764505431985	74.501	0.35593	75.238	75.111	75.467	0.73752					11	6	2	0	0	0	0.39388	1	28304	28304		39.957	18.42	1	1422200			21904	1199	15866	15978	21472	21472					0.07054938211717854
ILLSWIKKLL	10	Unmodified	_ILLSWIKKLL_					0	0	0		ENSG00000111536|ENST00000229134|IL26	ENSG00000111536|ENST00000229134|IL26	ENSG00000111536|ENST00000229134|IL26	MSMS	A375_MHC_IP_R1	1	614.1971435546875	2	613.915384	1225.81622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.14	1	119.14	118.64	119.64	0								0	0	0	0.15591	1	43984	43984		1.6526	0.17072	1				21905	2997	15867	15979	21473	21473					0.21234050815519367
ILLVRGRNRR	10	Unmodified	_ILLVRGRNRR_					0	0	0			REV__ENST00000296509.10_1_4:120986924-120987941:-|nuORF	REV__ENST00000296509.10_1_4:120986924-120987941:-|nuORF	MSMS	A375_MHC_IP_R2	2	626.9634399414062	2	626.907279	1251.80001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.378	1	87.111	86.611	87.611	0.733								0	0	0	0.15531	1	32849	32849		3.5965	1.7523	1		+		21906	23389	15868	15980	21474	21474					0.18417782421988704
ILLYFPNGQ	9	Unmodified	_ILLYFPNGQ_					0	0	0		TM4SF18|p.S36F|1|0.66|ENSG00000163762|chr3:149333276-149333276|G/A|missense_variant;ENST00000468398.1_1_3:149047933-149051100:-|nuORF;ENST00000491182.1_1_3:149042665-149051366:-|nuORF;ENSG00000163762|ENST00000296059|TM4SF18	TM4SF18|p.S36F|1|0.66|ENSG00000163762|chr3:149333276-149333276|G/A|missense_variant	TM4SF18|p.S36F|1|0.66|ENSG00000163762|chr3:149333276-149333276|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	355.46002197265625	3	355.530687	1063.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.938	1	37.938	37.438	38.438	0								0	0	0	0.15486	1	12824	12824		2.9952	1.9238	1				21907	6717	15869	15981	21475	21475					0.04098930965665204
ILLYFVFIWIV	11	Unmodified	_ILLYFVFIWIV_					0	0	0		ENST00000309395.6_1_4:71847778-71847925:+|nuORF	ENST00000309395.6_1_4:71847778-71847925:+|nuORF	ENST00000309395.6_1_4:71847778-71847925:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	713.8297119140625	2	713.430867	1424.84718	-0.94039	-0.0006709	0.4426	0.00031576	-0.49779	-0.00035514	713.4305336188311	148.99	2.2828	148.99	147.72	150	0					232	79	5	0	0	0	0.73897	1	57032	57032		0.35063	0.043601	1	1604400			21908	10609	15870	15982	21476	21476					0.1517520412974136
ILMDERTFL	9	Oxidation (M)	_ILM(Oxidation (M))DERTFL_		ILM(1)DERTFL		ILM(56)DERTFL	0	0	1		ENSG00000115464|ENST00000398571|USP34;nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENST00000463046.5_1_2:61417336-61434009:-|nuORF	ENSG00000115464|ENST00000398571|USP34	ENSG00000115464|ENST00000398571|USP34	MULTI-MSMS	A375_MHC_IP_R1	1	577.292236328125	2	577.299724	1152.5849	-0.18226	-0.00010522	-0.38084	-0.00021986	-0.56309	-0.00032507	577.2992828266507	73.766	0.55807	73.766	73.437	73.995	0					26	10	3	0	0	0	0.073067	2	26908	26850;26908		55.503	19.376	1	4462200			21909	3311	15871	15983	21477;21478	21478		161			0.014706350514870792
ILMDERTFL	9	Oxidation (M)	_ILM(Oxidation (M))DERTFL_		ILM(1)DERTFL		ILM(48)DERTFL	0	0	1		ENSG00000115464|ENST00000398571|USP34;nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENST00000463046.5_1_2:61417336-61434009:-|nuORF	ENSG00000115464|ENST00000398571|USP34	ENSG00000115464|ENST00000398571|USP34	MULTI-SECPEP	A375_MHC_IP_R2	2	577.6989135742188	2	577.299724	1152.5849	-0.20923	-0.00012079	-0.33051	-0.00019081	-0.53974	-0.00031159	577.2992497474988	72.944	0.61015	73.679	73.328	73.938	0.73541					27	11	3	0	0	0	0.23894	1	27639	27639		47.594	18.513	1	4346100			21910	3311	15871	15983	21479	21479		161			0.014706350514870792
ILMDERTFL	9	Unmodified	_ILMDERTFL_					0	0	0		ENSG00000115464|ENST00000398571|USP34;nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENST00000463046.5_1_2:61417336-61434009:-|nuORF	ENSG00000115464|ENST00000398571|USP34	ENSG00000115464|ENST00000398571|USP34	MULTI-SECPEP	A375_MHC_IP_R1	1	569.7017211914062	2	569.302267	1136.58998	-0.47807	-0.00027216	-0.83471	-0.0004752	-1.3128	-0.00074737	569.3021870361006	94.727	0.71418	94.727	94.446	95.16	0					29	13	3	0	0	0	0.43207	1	34811	34811		40.239	13.356	1	4565900			21911	3311	15871	15984	21480	21480					0.027149389141186475
ILMDERTFL	9	Unmodified	_ILMDERTFL_					0	0	0		ENSG00000115464|ENST00000398571|USP34;nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENST00000463046.5_1_2:61417336-61434009:-|nuORF	ENSG00000115464|ENST00000398571|USP34	ENSG00000115464|ENST00000398571|USP34	MULTI-SECPEP	A375_MHC_IP_R2	2	569.7017211914062	2	569.302267	1136.58998	-0.15436	-8.7877E-05	-0.71396	-0.00040646	-0.86832	-0.00049434	569.3023579973226	93.924	0.8615	94.669	94.312	95.173	0.74474					34	16	3	0	0	0	0.43207	1	35710	35710		40.239	17.091	1	3330600			21912	3311	15871	15984	21481	21481					0.027149389141186475
ILMEHIHKL	9	Oxidation (M)	_ILM(Oxidation (M))EHIHKL_		ILM(1)EHIHKL		ILM(100)EHIHKL	0	0	1		ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	383.93682861328125	3	383.886476	1148.6376	0.18552	7.1219E-05	-0.30796	-0.00011822	-0.12244	-4.7003E-05	383.88643750392026	27.476	2.87	27.476	26.878	29.748	0					190	56	5	0	0	0	0.0090499	4	8479	8241;8479;8490;8740		100.09	58.135	1	397710000			21913	11882	15872	15985	21482;21483;21484;21485	21483		455			0.06922637904949624
ILMEHIHKL	9	Oxidation (M)	_ILM(Oxidation (M))EHIHKL_		ILM(1)EHIHKL		ILM(86)EHIHKL	0	0	1		ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	575.7256469726562	2	575.326076	1148.6376	-0.29337	-0.00016878	-0.20313	-0.00011687	-0.4965	-0.00028565	575.3260567728088	27.495	1.363	27.495	27.128	28.491	0					70	26	4	0	0	0	0.017727	2	8275	8275;8545		86.332	46.382	1	21282000			21914	11882	15872	15985	21486;21487	21486		455			0.06922637904949624
ILMEHIHKL	9	Oxidation (M)	_ILM(Oxidation (M))EHIHKL_		ILM(1)EHIHKL		ILM(69)EHIHKL	0	0	1		ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	383.9364318847656	3	383.886476	1148.6376	0.16679	6.4028E-05	0.1009	3.8736E-05	0.26769	0.00010276	383.886489787315	39.55	2.1812	39.55	38.933	41.114	0					82	42	5	0	0	0	0.037085	2	13520	13520;13590		69.338	41.105	1	52572000			21915	11882	15872	15985	21488;21489	21488		455			0.06922637904949624
ILMEHIHKL	9	Oxidation (M)	_ILM(Oxidation (M))EHIHKL_		ILM(1)EHIHKL		ILM(56)EHIHKL	0	0	1		ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	575.2008666992188	2	575.326076	1148.6376	-0.32169	-0.00018507	0.16635	9.5704E-05	-0.15534	-8.937E-05	575.3261098303203	39.515	0.45402	39.515	39.34	39.794	0					12	8	2	0	0	0	0.23894	1	13515	13515		55.503	28.619	1	2790600			21916	11882	15872	15985	21490	21490		455			0.06922637904949624
ILMEHIHKL	9	Oxidation (M)	_ILM(Oxidation (M))EHIHKL_		ILM(1)EHIHKL		ILM(72)EHIHKL	0	0	1		ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	384.286376953125	3	383.886476	1148.6376	-0.34991	-0.00013433	0.081046	3.1112E-05	-0.26887	-0.00010321	383.8865482936564	26.679	2.4884	27.339	26.857	29.345	0.65992					169	48	5	0	0	0	0.033808	6	8924	8924;9175;9201;9315;9426;9673		71.708	41.105	1	225390000			21917	11882	15872	15985	21491;21492;21493;21494;21495;21496	21491		455			0.06922637904949624
ILMEHIHKL	9	Oxidation (M)	_ILM(Oxidation (M))EHIHKL_		ILM(1)EHIHKL		ILM(96)EHIHKL	0	0	1		ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	575.7261352539062	2	575.326076	1148.6376	-0.45924	-0.00026421	-0.17211	-9.9022E-05	-0.63135	-0.00036323	575.3259857530547	26.718	1.5265	27.378	26.957	28.484	0.65992					64	29	3	0	0	0	0.0099737	1	8963	8963		96.367	56.417	1	10144000			21918	11882	15872	15985	21497	21497		455			0.06922637904949624
ILMEHIHKL	9	Oxidation (M)	_ILM(Oxidation (M))EHIHKL_		ILM(1)EHIHKL		ILM(53)EHIHKL	0	0	1		ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	384.2863464355469	3	383.886476	1148.6376	-0.45745	-0.00017561	1.9553	0.00075061	1.4978	0.000575	383.88654261606104	38.415	2.1433	39.189	38.432	40.575	0.77451					85	41	3	0	0	0	0.085252	3	14130	14130;14187;14245		53.317	28.435	1	75937000			21919	11882	15872	15985	21498;21499;21500	21498		455			0.06922637904949624
ILMEHIHKL	9	Oxidation (M)	_ILM(Oxidation (M))EHIHKL_		ILM(1)EHIHKL		ILM(56)EHIHKL	0	0	1		ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	575.7256469726562	2	575.326076	1148.6376	-0.58702	-0.00033773	0.18015	0.00010364	-0.40688	-0.00023409	575.3261360190362	38.45	0.4054	39.225	39.047	39.453	0.77451					11	7	2	0	0	0	0.14606	1	14192	14192		55.503	23.386	1	3576300			21920	11882	15872	15985	21501	21501		455			0.06922637904949624
ILMEHIHKL	9	Unmodified	_ILMEHIHKL_					0	0	0		ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	378.95489501953125	3	378.554838	1132.64269	0.2173	8.2259E-05	-0.10334	-3.9119E-05	0.11396	4.314E-05	378.5548844249211	39.566	2.3332	39.566	39.238	41.571	0					128	45	5	0	0	0	0.085252	4	13469	13428;13469;13707;13895		53.317	26.093	1	271980000			21921	11882	15872	15986	21502;21503;21504;21505	21503					0.08166941767581193
ILMEHIHKL	9	Unmodified	_ILMEHIHKL_					0	0	0		ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	567.728515625	2	567.328619	1132.64269	-0.49657	-0.00028172	0.23054	0.00013079	-0.26603	-0.00015092	567.3287416113767	39.567	0.81157	39.567	39.289	40.1	0					33	15	3	0	0	0	0.30133	1	13503	13503		56.177	42.271	1	20585000			21922	11882	15872	15986	21506	21506					0.08166941767581193
ILMEHIHKL	9	Unmodified	_ILMEHIHKL_					0	0	0		ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	378.95477294921875	3	378.554838	1132.64269	-0.251	-9.5016E-05	-0.15271	-5.781E-05	-0.40371	-0.00015283	378.55487565940365	38.449	2.6449	39.223	38.895	41.54	0.77451					142	51	5	0	0	0	0.037085	4	14106	14106;14132;14347;14631		69.338	30.723	1	333960000			21923	11882	15872	15986	21507;21508;21509;21510	21507					0.08166941767581193
ILMEHIHKL	9	Unmodified	_ILMEHIHKL_					0	0	0		ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	567.7280883789062	2	567.328619	1132.64269	-0.76	-0.00043117	-0.069118	-3.9213E-05	-0.82911	-0.00047038	567.3286219451176	38.417	0.55964	39.191	38.997	39.556	0.77451					24	10	3	0	0	0	0.10535	1	14176	14176		63.961	41.224	1	16450000			21924	11882	15872	15986	21511	21511					0.08166941767581193
ILMGVLKEV	9	Unmodified	_ILMGVLKEV_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	A375_MHC_IP_R1	1	501.69744873046875	2	501.306821	1000.59909	-0.31469	-0.00015776	0.37027	0.00018562	0.055581	2.7863E-05	501.30696762762005	91.864	1.7254	91.864	91.604	93.329	0					64	33	4	0	0	0	0.010788	1	33785	33785		155.03	50.227	1	24866000			21925	2877	15873	15987	21512	21512					0.09881332270447274
ILMGVLKEV	9	Unmodified	_ILMGVLKEV_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	A375_MHC_IP_R2	2	501.7065124511719	2	501.306821	1000.59909	-0.50125	-0.00025128	-0.06049	-3.0324E-05	-0.56174	-0.00028161	501.306751870068	91.008	1.0649	91.743	91.362	92.427	0.73451					54	20	4	0	0	0	0.011236	1	34571	34571		129.77	24.973	1	22314000			21926	2877	15873	15987	21513	21513					0.09881332270447274
ILMGVLKEV	9	Oxidation (M)	_ILM(Oxidation (M))GVLKEV_		ILM(1)GVLKEV		ILM(83)GVLKEV	0	0	1		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	A375_MHC_IP_R1	1	509.70440673828125	2	509.304278	1016.594	-0.36831	-0.00018758	-0.31012	-0.00015795	-0.67843	-0.00034553	509.3043283896726	91.931	1.0113	91.931	91.452	92.463	0					30	19	2	0	0	0	0.046478	1	33748	33748		82.529	34.183	1	3830800			21927	2877	15873	15988	21514	21514		133			0.08637028407838443
ILMGVLKEV	9	Oxidation (M)	_ILM(Oxidation (M))GVLKEV_		ILM(1)GVLKEV		ILM(80)GVLKEV	0	0	1		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	A375_MHC_IP_R1	1	509.7043151855469	2	509.304278	1016.594	-0.43808	-0.00022311	-0.58294	-0.00029689	-1.021	-0.00052001	509.30413977899366	74.817	4.0022	74.817	73.893	77.895	0					167	78	3	0	0	0	0.036758	1	27137	27137		79.596	20.917	1	4715800			21928	2877	15873	15988	21515	21515		133			0.08637028407838443
ILMGVLKEV	9	Oxidation (M)	_ILM(Oxidation (M))GVLKEV_		ILM(1)GVLKEV		ILM(70)GVLKEV	0	0	1		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	A375_MHC_IP_R2	2	509.5116882324219	2	509.304278	1016.594	-0.77067	-0.0003925	-0.094494	-4.8126E-05	-0.86516	-0.00044063	509.3042278462928	74.402	3.2028	75.139	74.398	77.601	0.73752					106	62	2	0	0	0	0.035419	1	28175	28175		70.332	28.492	1	5327300			21929	2877	15873	15988	21516	21516		133			0.08637028407838443
ILMGVLKEV	9	Oxidation (M)	_ILM(Oxidation (M))GVLKEV_		ILM(1)GVLKEV		ILM(120)GVLKEV	0	0	1		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	A375_MHC_IP_R2	2	509.703369140625	2	509.304278	1016.594	-1.0107	-0.00051477	0.003529	1.7973E-06	-1.0072	-0.00051297	509.3042122646269	71.562	1.7218	72.296	71.656	73.377	0.73421					66	33	4	0	0	0	0.013591	1	27047	27047		118.07	47.353	1	18494000			21930	2877	15873	15988	21517	21517		133			0.08637028407838443
ILMGVLKEV	9	Oxidation (M)	_ILM(Oxidation (M))GVLKEV_		ILM(1)GVLKEV		ILM(89)GVLKEV	0	0	1		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	A375_MHC_IP_R2	2	509.7034606933594	2	509.304278	1016.594	-0.64612	-0.00032907	-0.19028	-9.691E-05	-0.8364	-0.00042598	509.3041823680494	91.007	1.3181	91.742	91.058	92.376	0.7345					37	25	3	0	0	0	0.036758	1	34593	34593		89.401	37.132	1	4580100			21931	2877	15873	15988	21518	21518		133			0.08637028407838443
ILMICLALQ	9	Unmodified	_ILMICLALQ_					0	0	0			REV__ENSG00000108576|ENST00000650711|SLC6A4	REV__ENSG00000108576|ENST00000650711|SLC6A4	MSMS	A375_MHC_IP_R2	2	509.18536376953125	2	509.295399	1016.57624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.292	1	28.971	28.471	29.471	0.67857								0	0	0	0.14905	1	9752	9752		23.148	2.2772	1		+		21932	17539	15874	15989	21519	21519					0.06861989881315367
ILMIIRQLE	9	Unmodified	_ILMIIRQLE_					0	0	0		tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1	tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1	tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	377.9590148925781	3	376.898493	1127.67365	0.14773	5.568E-05	2.1782	0.00082094	2.3259	0.00087662	376.8997627435655	19.293	0.29937	19.293	19.221	19.521	0					14	7	4	0	0	0	0.73415	1	4681	4681		2.2828	0	1	23549000			21933	30065	15875	15990	21520	21520					0.11492095081825937
ILMPLLKKY	9	Unmodified	_ILMPLLKKY_					0	0	0		nc|ENSG00000151233|Q4G148-2|GXYLT1;ENSG00000151233|ENST00000398675|GXYLT1	nc|ENSG00000151233|Q4G148-2|GXYLT1	nc|ENSG00000151233|Q4G148-2|GXYLT1	MULTI-SECPEP	A375_MHC_IP_R2	2	374.3008728027344	3	373.571718	1117.69332	0.3369	0.00012586	1.3987	0.00052251	1.7356	0.00064837	373.5721159055228	27.93	0.2544	28.608	28.502	28.757	0.67857					5	4	2	0	0	0	0.7911	1	9660	9660		4.5289	4.5289	1	729640			21934	5889	15876	15991	21521	21521					0.1391847109259743
ILMPLSATPN	10	Unmodified	_ILMPLSATPN_					0	0	0			REV__ENSG00000124216|ENST00000244050|SNAI1	REV__ENSG00000124216|ENST00000244050|SNAI1	MSMS	A375_MHC_IP_R2	2	528.7294921875	2	528.791535	1055.56852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.92	1	136.03	135.53	136.53	0.11134								0	0	0	0.14719	1	53410	53410		23.148	1.4018	1		+		21935	18286	15877	15992	21522	21522					0.04295553885413028
ILNCMHYY	8	Unmodified	_ILNCMHYY_					0	0	0		ENST00000368885.7_1_6:111214828-111215200:+|nuORF	ENST00000368885.7_1_6:111214828-111215200:+|nuORF	ENST00000368885.7_1_6:111214828-111215200:+|nuORF	MSMS	A375_MHC_IP_R1	1	528.6928100585938	2	528.735706	1055.45686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.376	1	58.376	57.876	58.876	0								0	0	0	0.16876	1	20969	20969		10.183	0.83596	1				21936	11125	15878	15993	21523	21523					-0.06865203743382153
ILNDNYPNY	9	Unmodified	_ILNDNYPNY_					0	0	0			REV__ENSG00000105926|ENST00000222644|PALS2	REV__ENSG00000105926|ENST00000222644|PALS2	MULTI-SECPEP	A375_MHC_IP_R2	2	562.6400756835938	2	563.264196	1124.51384	-0.31368	-0.00017668	0.26986	0.000152	-0.043815	-2.468E-05	563.2640590800204	94.337	0.60818	95.081	94.818	95.426	0.74474					23	11	3	0	0	0	0.73363	1	35947	35947		6.7232	0	1	2554900	+		21937	17418	15879	15994	21524	21524					-0.04343741661659806
ILNEFPGHGL	10	Unmodified	_ILNEFPGHGL_					0	0	0		ENSG00000134899|ENST00000652225|ERCC5;nc|ENSG00000134899|P28715-2|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	MULTI-SECPEP	A375_MHC_IP_R1	1	549.1927490234375	2	548.792924	1095.57129	-0.54486	-0.00029902	0.058567	3.2141E-05	-0.4863	-0.00026688	548.7927368431847	73.732	1.1154	73.732	73.386	74.502	0					42	21	3	0	0	0	0.071695	1	26832	26832		78.728	30.382	1	2914000			21938	4621	15880	15995	21525	21525					0.027331453345595946
ILNEFPGHGL	10	Unmodified	_ILNEFPGHGL_					0	0	0		ENSG00000134899|ENST00000652225|ERCC5;nc|ENSG00000134899|P28715-2|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	MULTI-SECPEP	A375_MHC_IP_R2	2	549.1922607421875	2	548.792924	1095.57129	-0.81243	-0.00044586	0.032071	1.76E-05	-0.78036	-0.00042825	548.792885715959	72.888	1.1187	73.623	73.278	74.396	0.73541					30	21	2	0	0	0	0.071695	1	27666	27666		88.954	36.686	1	3102700			21939	4621	15880	15995	21526	21526					0.027331453345595946
ILNGSVYSSF	10	Unmodified	_ILNGSVYSSF_					0	0	0			REV__tr|U7SV25|U7SV25_FUSNUBiotinbiosynthesisproteinBioCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01102PE=4SV=1	REV__tr|U7SV25|U7SV25_FUSNUBiotinbiosynthesisproteinBioCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01102PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	544.1856689453125	2	543.776939	1085.53933	-1.0074	-0.0005478	-2.2913	-0.0012459	-3.2987	-0.0017937	544.2769937002632	62.259	0.81039	63.002	62.37	63.18	0.74263					18	15	2	0	0	0	0.47255	1	23432	23432		29.841	5.82	1	856140	+		21940	28579	15881	15996	21527	21527					-2.2671392343909247E-05
ILNHGRLSGL	10	Unmodified	_ILNHGRLSGL_					0	0	0		nc|ENSG00000068724|Q9ULT0-3|TTC7A	nc|ENSG00000068724|Q9ULT0-3|TTC7A	nc|ENSG00000068724|Q9ULT0-3|TTC7A	MULTI-SECPEP	A375_MHC_IP_R2	2	540.1180419921875	2	540.31964	1078.62473	-0.75493	-0.0004079	1.9334	0.0010447	1.1785	0.00063677	540.320802253373	89.743	0.3091	90.475	90.339	90.648	0.7318					7	5	2	0	0	0	0.91556	1	34156	34156		10.074	5.7447	1	1388900			21941	14475	15882	15997	21528	21528					0.0885594283708997
ILNITFGISQ	10	Unmodified	_ILNITFGISQ_					0	0	0		ENST00000296666.12_1_5:126888155-126888323:+|nuORF	ENST00000296666.12_1_5:126888155-126888323:+|nuORF	ENST00000296666.12_1_5:126888155-126888323:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	369.9454345703125	3	369.213246	1104.61791	0.63074	0.00023288	-0.28926	-0.0001068	0.34149	0.00012608	369.213181396541	38.835	0.81416	38.835	38.577	39.391	0					48	15	5	0	0	0	0.67901	1	13344	13344		14.957	0.55178	1	92101000			21942	10509	15883	15998	21529	21529					0.06978585165870754
ILNITFGISQ	10	Unmodified	_ILNITFGISQ_					0	0	0		ENST00000296666.12_1_5:126888155-126888323:+|nuORF	ENST00000296666.12_1_5:126888155-126888323:+|nuORF	ENST00000296666.12_1_5:126888155-126888323:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	369.9450988769531	3	369.213246	1104.61791	0.062384	2.3033E-05	-0.13991	-5.1656E-05	-0.077523	-2.8623E-05	369.2132313281004	37.938	1.0711	38.713	38.33	39.401	0.77451					46	20	3	0	0	0	0.70312	1	14077	14077		10.899	2.4547	1	88839000			21943	10509	15883	15998	21530	21530					0.06978585165870754
ILNKLLREY	9	Unmodified	_ILNKLLREY_					0	0	0		ENST00000553440.1_1_15:27216658-27271989:+|nuORF;nc|ENSG00000182256|Q99928-2|GABRG3;ENSG00000182256|ENST00000615808|GABRG3	ENST00000553440.1_1_15:27216658-27271989:+|nuORF	ENST00000553440.1_1_15:27216658-27271989:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	581.7509765625	2	581.353148	1160.69174	-0.57377	-0.00033357	-0.47893	-0.00027843	-1.0527	-0.00061199	581.3518641989428	149.73	1.2966	149.73	148.71	150	0					163	48	4	0	0	0	0.81363	1	57097	57097		1.8442	1.8442	1	386660			21944	8394	15884	15999	21531	21531					0.11782553328202994
ILNKQEFFV	9	Unmodified	_ILNKQEFFV_					0	0	0		EPS15|p.P121Mfs*6|1|0.37|ENSG00000085832|chr1:51465274-51465275|GG/-|frameshift_variant;ENST00000471391.1_1_1:51926726-51984921:-|nuORF;ENST00000371727.5_1_1:51924189-51984903:-|nuORF;EPS15|p.T760Hfs*43|1|0.55|ENSG00000085832|chr1:51363947-51363947|T/-|frameshift_variant;ENSG00000085832|ENST00000371733|EPS15	EPS15|p.P121Mfs*6|1|0.37|ENSG00000085832|chr1:51465274-51465275|GG/-|frameshift_variant	EPS15|p.P121Mfs*6|1|0.37|ENSG00000085832|chr1:51465274-51465275|GG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	569.1953125	2	569.318774	1136.623	-0.16871	-9.6051E-05	-0.46759	-0.00026621	-0.63631	-0.00036226	569.3189338666484	79.065	0.30288	79.065	78.859	79.161	0					10	5	3	0	0	0	0.5212	1	28887	28887		26.268	7.0112	1	823240			21945	1819	15885	16000	21532	21532					0.06014889028460857
ILNKQEFFV	9	Unmodified	_ILNKQEFFV_					0	0	0		EPS15|p.P121Mfs*6|1|0.37|ENSG00000085832|chr1:51465274-51465275|GG/-|frameshift_variant;ENST00000471391.1_1_1:51926726-51984921:-|nuORF;ENST00000371727.5_1_1:51924189-51984903:-|nuORF;EPS15|p.T760Hfs*43|1|0.55|ENSG00000085832|chr1:51363947-51363947|T/-|frameshift_variant;ENSG00000085832|ENST00000371733|EPS15	EPS15|p.P121Mfs*6|1|0.37|ENSG00000085832|chr1:51465274-51465275|GG/-|frameshift_variant	EPS15|p.P121Mfs*6|1|0.37|ENSG00000085832|chr1:51465274-51465275|GG/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	569.318774	1136.623	-0.31226	-0.00017777	-0.23127	-0.00013167	-0.54353	-0.00030944	569.3186647170666	78.161	0.25488	78.904	78.776	79.031	0.74293	-0.08052	8.2894E-05	NaN	26.268	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	778900			21946	1819	15885	16000							0.06014889028460857
ILNKRGKKRTV	11	Unmodified	_ILNKRGKKRTV_					0	0	0			REV__ENST00000357727.6_1_7:28452319-28452490:+|nuORF	REV__ENST00000357727.6_1_7:28452319-28452490:+|nuORF	MSMS	A375_MHC_IP_R2	2	657.0040893554688	2	656.93042	1311.84629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.351	1	87.084	86.584	87.584	0.733								0	0	0	0.16334	1	32838	32838		1.3295	0.25807	1		+		21947	23846	15886	16001	21533	21533					0.20283802533390372
ILNLQKQLL	9	Unmodified	_ILNLQKQLL_					0	0	0			REV__ENST00000520726.1_1_3:169521807-169526495:-|nuORF	REV__ENST00000520726.1_1_3:169521807-169526495:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	542.2500610351562	2	541.850242	1081.68593	-0.86875	-0.00047073	-0.091842	-4.9765E-05	-0.96059	-0.00052049	541.8500718986455	129.6	0.19986	129.84	129.72	129.92	0.23946					7	3	3	0	0	0	0.13491	1	50940	50940		44.407	2.3125	1	5146600	+		21948	21091	15887	16002	21534	21534					0.14835454816534366
ILNLSIANL	9	Unmodified	_ILNLSIANL_					0	0	0		GALR1|p.D81N|1|0.35|ENSG00000166573|chr18:77250789-77250789|G/A|missense_variant	GALR1|p.D81N|1|0.35|ENSG00000166573|chr18:77250789-77250789|G/A|missense_variant	GALR1|p.D81N|1|0.35|ENSG00000166573|chr18:77250789-77250789|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	486.1999816894531	2	485.800217	969.585882	-0.059828	-2.9064E-05	-0.70031	-0.00034021	-0.76013	-0.00036927	485.80000667482557	93.03	0.35681	93.03	92.871	93.228	0					9	6	2	0	0	0	0.31606	1	34229	34229		47.749	0	1	1641300			21949	14036	15888	16003	21535	21535					0.09987217482705546
ILNLSIANL	9	Unmodified	_ILNLSIANL_					0	0	0		GALR1|p.D81N|1|0.35|ENSG00000166573|chr18:77250789-77250789|G/A|missense_variant	GALR1|p.D81N|1|0.35|ENSG00000166573|chr18:77250789-77250789|G/A|missense_variant	GALR1|p.D81N|1|0.35|ENSG00000166573|chr18:77250789-77250789|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	485.800217	969.585882	-0.51949	-0.00025237	0.15539	7.5489E-05	-0.3641	-0.00017688	485.80023334351426	92.071	0.40236	92.81	92.585	92.987	0.73902	-0.10987	0.00051286	NaN	47.749	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	975080			21950	14036	15888	16003							0.09987217482705546
ILNNQLYLY	9	Unmodified	_ILNNQLYLY_					0	0	0			REV__ENSG00000139330|ENST00000266719|KERA	REV__ENSG00000139330|ENST00000266719|KERA	MULTI-SECPEP	A375_MHC_IP_R2	2	576.6893310546875	2	577.316232	1152.61791	-0.26208	-0.0001513	-1.7397	-0.0010044	-2.0018	-0.0011557	577.8165087834773	80.923	0.51225	81.668	81.468	81.981	0.74473					12	9	2	0	0	0	0.77244	1	30742	30742		9.3474	7.2877	1	1443900	+		21951	19150	15889	16004	21536	21536					0.04770585165852026
ILNPEVVTV	9	Unmodified	_ILNPEVVTV_					0	0	0		nc|ENSG00000163946|Q9UK61-2|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR;ENST00000459993.5_1_3:56657067-56667992:-|nuORF	nc|ENSG00000163946|Q9UK61-2|TASOR	nc|ENSG00000163946|Q9UK61-2|TASOR	MULTI-SECPEP	A375_MHC_IP_R1	1	492.6917724609375	2	492.292225	982.569897	-0.17283	-8.5083E-05	-0.014715	-7.2443E-06	-0.18755	-9.2328E-05	492.2921822206901	93.199	1.0195	93.199	92.871	93.89	0					52	19	5	0	0	0	0.13064	1	34201	34201		65.235	2.6623	1	16488000			21952	6751	15890	16005	21537	21537					0.07791511245795846
ILNPEVVTV	9	Unmodified	_ILNPEVVTV_					0	0	0		nc|ENSG00000163946|Q9UK61-2|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR;ENST00000459993.5_1_3:56657067-56667992:-|nuORF	nc|ENSG00000163946|Q9UK61-2|TASOR	nc|ENSG00000163946|Q9UK61-2|TASOR	MULTI-SECPEP	A375_MHC_IP_R2	2	492.6919250488281	2	492.292225	982.569897	-0.43643	-0.00021485	-0.071044	-3.4974E-05	-0.50748	-0.00024983	492.2921690306653	92.396	1.1141	93.135	92.785	93.899	0.73902					69	21	5	0	0	0	0.13064	1	35078	35078		65.235	11.402	1	15932000			21953	6751	15890	16005	21538	21538					0.07791511245795846
ILNPLLTLL	9	Unmodified	_ILNPLLTLL_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6	ENSG00000025800|ENST00000373625|KPNA6	ENSG00000025800|ENST00000373625|KPNA6	MULTI-SECPEP	A375_MHC_IP_R1	1	505.73626708984375	2	505.336436	1008.65832	-0.68824	-0.00034779	0.5831	0.00029466	-0.10514	-5.3129E-05	505.33671988394053	137.79	0.20428	137.79	137.69	137.9	0					6	3	2	0	0	0	0.14105	1	53044	53044		50.855	0	1	1031300			21954	1092	15891	16006	21539	21539					0.15433551556270686
ILNPYNLFL	9	Unmodified	_ILNPYNLFL_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B;KDM5B|p.I282Yfs*17|1|0.1|ENSG00000117139|chr1:202762773-202762774|-/TTAAACTTAAATTTGTACCTTAAATA|frameshift_variant	ENSG00000117139|ENST00000367265|KDM5B;KDM5B|p.I282Yfs*17|1|0.1|ENSG00000117139|chr1:202762773-202762774|-/TTAAACTTAAATTTGTACCTTAAATA|frameshift_variant	ENSG00000117139|ENST00000367265|KDM5B	MULTI-SECPEP	A375_MHC_IP_R2	2	554.2156372070312	2	553.815867	1105.61718	-0.70394	-0.00038986	0.47117	0.00026094	-0.23277	-0.00012891	553.8160566619431	133.35	0.35333	133.51	133.35	133.7	0.16487					14	6	3	0	0	0	0.061442	1	52464	52464		104.8	104.8	1	13880000			21955	3458;14205	15892	16007	21540	21540					0.06859790516796238
ILNRWRCFVYK	11	Unmodified	_ILNRWRCFVYK_					0	0	0			REV__ADAM32|p.G543R|1|0.16|ENSG00000197140|chr8:39232128-39232128|G/A|missense_variant	REV__ADAM32|p.G543R|1|0.16|ENSG00000197140|chr8:39232128-39232128|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	500.715087890625	3	499.943096	1496.80746	-0.51125	-0.00025559	-1.5529	-0.00077638	-2.0642	-0.001032	499.94248347170105	132.53	0.45998	132.72	132.46	132.92	0.18953					11	8	2	0	0	0	1.001	1	52147	52147		0.094841	0.021578	1	779300	+		21956	15319	15893	16008	21541	21541					0.0789275390734474
ILNSMYGRY	9	Unmodified	_ILNSMYGRY_					0	0	0			REV__ENST00000553128.5_1_12:110934754-110939856:-|nuORF	REV__ENST00000553128.5_1_12:110934754-110939856:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	558.3636474609375	2	558.778959	1115.54336	-0.74489	-0.00041623	1.6852	0.00094166	0.94032	0.00052543	558.7794775615598	98.045	0.35537	98.804	98.64	98.995	0.75977					9	6	2	0	0	0	0.65527	1	37247	37247		17.113	11.816	1	815840	+		21957	26060	15894	16009	21542	21542					-0.009785009171764614
ILPCCSLQF	9	Unmodified	_ILPCCSLQF_					0	0	0			REV__ENST00000324366.12_2_14:23396769-23396847:-|nuORF	REV__ENST00000324366.12_2_14:23396769-23396847:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	512.1675415039062	2	512.253731	1022.49291	-1.0817	-0.00055408	-0.58311	-0.0002987	-1.6648	-0.00085278	512.2537374579678	56.353	2.6473	57.103	56.591	59.238	0.75015					129	51	5	0	0	0	0.38603	1	21257	21257		25.399	2.2509	1	37829000	+		21958	23590	15895	16010	21543	21543					-0.017437465665352647
ILPEEITNL	9	Unmodified	_ILPEEITNL_					0	0	0		ENSG00000066557|ENST00000370952|LRRC40	ENSG00000066557|ENST00000370952|LRRC40	ENSG00000066557|ENST00000370952|LRRC40	MSMS	A375_MHC_IP_R2	2	521.2571411132812	2	521.294965	1040.57538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.57	1	110.31	109.81	110.81	0.74684								0	0	0	0.15069	1	41346	41346		20.454	2.3073	1				21959	1414	15896	16011	21544	21544					0.05671190037605811
ILPERFLAV	9	Unmodified	_ILPERFLAV_					0	0	0		ENST00000502576.5_1_4:88258430-88295551:-|nuORF;ENSG00000198189|ENST00000358290|HSD17B11	ENST00000502576.5_1_4:88258430-88295551:-|nuORF	ENST00000502576.5_1_4:88258430-88295551:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	529.7230834960938	2	529.32386	1056.63317	-0.63712	-0.00033725	-0.15734	-8.3286E-05	-0.79447	-0.00042053	529.323604959135	95.44	0.75756	95.44	95.109	95.867	0					26	14	3	0	0	0	0.50484	1	35065	35065		34.932	13.185	1	3667800			21960	9240	15897	16012	21545	21545					0.10711496753697247
ILPERFLAV	9	Unmodified	_ILPERFLAV_					0	0	0		ENST00000502576.5_1_4:88258430-88295551:-|nuORF;ENSG00000198189|ENST00000358290|HSD17B11	ENST00000502576.5_1_4:88258430-88295551:-|nuORF	ENST00000502576.5_1_4:88258430-88295551:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	529.7236328125	2	529.32386	1056.63317	-0.34393	-0.00018205	-1.2081	-0.00063949	-1.5521	-0.00082154	529.3234727720939	94.514	0.65851	95.259	94.919	95.577	0.74473					25	12	3	0	0	0	0.4465	1	35897	35897		38.176	9.094	1	3964700			21961	9240	15897	16012	21546	21546					0.10711496753697247
ILPGREDL	8	Unmodified	_ILPGREDL_					0	0	0		ENST00000358726.6_1_19:16763368-16763446:-|nuORF	ENST00000358726.6_1_19:16763368-16763446:-|nuORF	ENST00000358726.6_1_19:16763368-16763446:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	456.7178039550781	2	456.761092	911.507631	-0.54954	-0.00025101	-0.11063	-5.0532E-05	-0.66017	-0.00030154	456.76105610204803	61.803	0.65694	62.546	62.319	62.976	0.74263					20	12	2	0	0	0	0.77123	1	23509	23509		14.582	1.0738	1	1709200			21962	10998	15898	16013	21547	21547					0.04833784897471105
ILPHQTRWRTN	11	Unmodified	_ILPHQTRWRTN_					0	0	0			REV__chr5:114433929-114463049|171|25.89|0.11|7.84|+|ENST00000505491|KCNN2,KCNN2	REV__chr5:114433929-114463049|171|25.89|0.11|7.84|+|ENST00000505491|KCNN2,KCNN2	MULTI-SECPEP	A375_MHC_IP_R2	2	711.0651245117188	2	711.391659	1420.76877	-0.58182	-0.0004139	-0.42752	-0.00030414	-1.0093	-0.00071804	711.3918114375384	136.42	0.46011	136.53	136.3	136.76	0.11134					17	8	3	0	0	0	0.9889	1	53583	53583		12.241	3.4953	1	1689000	+		21963	15756	15899	16014	21548	21548					0.07521164597210372
ILPHSPINV	9	Unmodified	_ILPHSPINV_					0	0	0		HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant;ENSG00000128731|ENST00000261609|HERC2;ENST00000430598.5_1_15:20613931-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;ENST00000524476.5_1_15:28882105-28886289:+|nuORF;ENST00000529353.1_1_15:28878360-28886587:+|nuORF;ENST00000562687.6_3_16:32769598-32772029:+|nuORF;ENST00000529624.5_3_15:28877823-28916776:+|nuORF	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant;ENST00000529624.5_3_15:28877823-28916776:+|nuORF	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	495.65771484375	2	495.292559	988.570566	-0.48745	-0.00024143	0.71877	0.000356	0.23132	0.00011457	495.2928038654352	65.437	0.20555	65.437	65.257	65.462	0					5	3	2	0	0	0	0.3213	1	23667	23667		30.637	3.7529	1	771820			21964	14109;13133	15900	16015	21549	21549					0.07582350685515848
ILPLLLFPDT	10	Unmodified	_ILPLLLFPDT_					0	0	0		ENST00000354480.2_1_X:48435806-48435944:+|nuORF	ENST00000354480.2_1_X:48435806-48435944:+|nuORF	ENST00000354480.2_1_X:48435806-48435944:+|nuORF	MSMS	A375_MHC_IP_R2	2	571.6633911132812	2	571.347	1140.67945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.62	1	131.81	131.31	132.31	0.18953								0	0	0	0.15531	1	51773	51773		3.5965	0	1				21965	10940	15901	16016	21550	21550					0.11473516865135025
ILPLLLLLKPL	11	Unmodified	_ILPLLLLLKPL_					0	0	0		ENSG00000280021|ENST00000624103|OR51F1	ENSG00000280021|ENST00000624103|OR51F1	ENSG00000280021|ENST00000624103|OR51F1	MSMS	A375_MHC_IP_R2	2	623.5074462890625	2	623.44906	1244.88357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.553	1	88.285	87.785	88.785	0.7318								0	0	0	0.1636	1	33300	33300		0	0	1				21966	10044	15902	16017	21551	21551					0.2709208102644425
ILPPSRLPS	9	Unmodified	_ILPPSRLPS_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MSMS	A375_MHC_IP_R2	2	490.7003479003906	2	490.300384	978.586216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.69	1	108.44	107.94	108.94	0.75436								0	0	0	0.15486	1	40677	40677		4.3292	0.38484	1		+		21967	18617	15903	16018	21552	21552					0.09606637202557522
ILPRRHQQF	9	Unmodified	_ILPRRHQQF_					0	0	0			REV__nc|ENSG00000151136|A6QL63-2|ABTB3	REV__nc|ENSG00000151136|A6QL63-2|ABTB3	MULTI-MSMS	A375_MHC_IP_R1	1	398.9211120605469	3	398.899996	1193.67816	-0.16593	-6.6191E-05	0.099799	3.981E-05	-0.066136	-2.6382E-05	398.9000350362804	28.434	1.1644	28.434	28.088	29.252	0					70	22	5	0	0	0	0.68705	1	8785	8785		8.1555	1.9637	1	143780000	+		21968	19739	15904	16019	21553	21553					0.08906740339602948
ILPRTFHYF	9	Unmodified	_ILPRTFHYF_					0	0	0			REV__ENSG00000101916|ENST00000218032|TLR8	REV__ENSG00000101916|ENST00000218032|TLR8	MULTI-MSMS	A375_MHC_IP_R2	2	597.1334838867188	2	597.326934	1192.63931	-1.0779	-0.00064388	-0.25552	-0.00015263	-1.3335	-0.00079651	597.3268824795653	52.87	0.60951	53.621	53.385	53.995	0.75105					22	11	4	0	0	0	0.63811	1	20028	20028		12.532	0.89125	1	6396100	+		21969	17190	15905	16020	21554	21554					0.0507001498522186
ILPSFLLKYF	10	Unmodified	_ILPSFLLKYF_					0	0	0			REV__chr17:43941654-43944913|123|17.49|0.03|9.19|-|2|TE_info:THE1D,THE1D_dup11417,ERVL-MaLR,LTR,donor,-,43944913,43945207|PPY,None|10	REV__chr17:43941654-43944913|123|17.49|0.03|9.19|-|2|TE_info:THE1D,THE1D_dup11417,ERVL-MaLR,LTR,donor,-,43944913,43945207|PPY,None|10	MULTI-SECPEP	A375_MHC_IP_R1	1	413.9398193359375	3	414.249521	1239.72673	0.14142	5.8582E-05	3.0741	0.0012735	3.2156	0.001332	414.5848677739413	32.431	0.20165	32.431	32.333	32.535	0					5	3	2	0	0	0	0.93911	1	10450	10450		4.1895	2.1035	1	857830	+		21970	15724	15906	16021	21555	21555					0.11645796136122044
ILPWGKRAE	9	Unmodified	_ILPWGKRAE_					0	0	0			REV__MROH2B|p.E391K|1|0.46|ENSG00000171495|chr5:41052524-41052524|C/T|missense_variant	REV__MROH2B|p.E391K|1|0.46|ENSG00000171495|chr5:41052524-41052524|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	357.6094970703125	3	357.209948	1068.60801	-0.33862	-0.00012096	-0.47944	-0.00017126	-0.81806	-0.00029222	357.2097206968055	66.398	0.86824	67.134	66.882	67.75	0.73631					34	16	3	0	0	0	0.68046	1	25259	25259		8.7454	1.1365	1	2210700	+		21971	27035	15907	16022	21556	21556					0.07645441951149223
ILQAIANEQL	10	Unmodified	_ILQAIANEQL_					0	0	0		ENST00000509018.5_1_5:130762813-130764597:-|nuORF;ENST00000507093.5_1_5:130762813-130766554:-|nuORF	ENST00000509018.5_1_5:130762813-130764597:-|nuORF	ENST00000509018.5_1_5:130762813-130764597:-|nuORF	MSMS	A375_MHC_IP_R1	1	556.9918212890625	2	556.819138	1111.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.36	1	107.36	106.86	107.86	0								0	0	0	0.14983	1	39394	39394		18.146	3.3081	1				21972	12860	15908	16023	21557	21557					0.07237683677499263
ILQDEQYLM	9	Oxidation (M)	_ILQDEQYLM(Oxidation (M))_		ILQDEQYLM(1)		ILQDEQYLM(80)	0	0	1		nc|ENSG00000119599|Q8WV16-4|DCAF4;nc|ENSG00000119599|Q8WV16-2|DCAF4;nc|ENSG00000119599|Q8WV16-3|DCAF4;nc|ENSG00000119599|Q8WV16-5|DCAF4;ENSG00000119599|ENST00000358377|DCAF4	nc|ENSG00000119599|Q8WV16-4|DCAF4	nc|ENSG00000119599|Q8WV16-4|DCAF4	MULTI-MSMS	A375_MHC_IP_R1	1	584.675048828125	2	584.781364	1167.54818	-0.5679	-0.0003321	0.74808	0.00043747	0.18018	0.00010537	584.7814172441374	68.303	0.661	68.303	67.955	68.616	0					23	12	3	0	0	0	0.024574	1	24733	24733		79.596	37.502	1	2782500			21973	3603	15909	16024	21558	21558		186			-0.028896615650864987
ILQDEQYLM	9	Oxidation (M)	_ILQDEQYLM(Oxidation (M))_		ILQDEQYLM(1)		ILQDEQYLM(72)	0	0	1		nc|ENSG00000119599|Q8WV16-4|DCAF4;nc|ENSG00000119599|Q8WV16-2|DCAF4;nc|ENSG00000119599|Q8WV16-3|DCAF4;nc|ENSG00000119599|Q8WV16-5|DCAF4;ENSG00000119599|ENST00000358377|DCAF4	nc|ENSG00000119599|Q8WV16-4|DCAF4	nc|ENSG00000119599|Q8WV16-4|DCAF4	MULTI-MSMS	A375_MHC_IP_R2	2	584.7164916992188	2	584.781364	1167.54818	-0.42481	-0.00024842	0.12523	7.323E-05	-0.29958	-0.00017519	584.7812985600374	67.723	0.50934	68.459	68.205	68.715	0.73631					17	9	2	0	0	0	0.033557	1	25630	25630		71.922	31.965	1	2139300			21974	3603	15909	16024	21559	21559		186			-0.028896615650864987
ILQDGRIFI	9	Unmodified	_ILQDGRIFI_					0	0	0		ENSG00000128739|ENST00000390687|SNRPN;nc|ENSG00000128739|P63162-2|SNRPN;ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678|SNRPB;nc|ENSG00000125835|P14678-3|SNRPB	ENSG00000128739|ENST00000390687|SNRPN	ENSG00000128739|ENST00000390687|SNRPN	MULTI-SECPEP	A375_MHC_IP_R1	1	538.2186889648438	2	537.818941	1073.62333	-0.70802	-0.00038079	0.41687	0.0002242	-0.29114	-0.00015658	537.8191245426142	89.551	1.1148	89.551	89.272	90.387	0					58	21	3	0	0	0	0.14273	1	32863	32863		74.2	18.023	1	22641000			21975	4162	15910	16025	21560	21560					0.08946308748318188
ILQDGRIFI	9	Unmodified	_ILQDGRIFI_					0	0	0		ENSG00000128739|ENST00000390687|SNRPN;nc|ENSG00000128739|P63162-2|SNRPN;ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678|SNRPB;nc|ENSG00000125835|P14678-3|SNRPB	ENSG00000128739|ENST00000390687|SNRPN	ENSG00000128739|ENST00000390687|SNRPN	MULTI-SECPEP	A375_MHC_IP_R2	2	537.2029418945312	2	537.818941	1073.62333	-0.79615	-0.00042819	0.0057565	3.096E-06	-0.79039	-0.00042509	537.8189018389752	88.674	0.95751	89.406	89.077	90.035	0.7318					54	18	4	0	0	0	0.031881	1	33788	33788		67.838	2.6031	1	28208000			21976	4162	15910	16025	21561	21561					0.08946308748318188
ILQDRLNQV	9	Unmodified	_ILQDRLNQV_					0	0	0		ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	MULTI-SECPEP	A375_MHC_IP_R1	1	549.6905517578125	2	549.81693	1097.61931	-0.71058	-0.00039069	0.16488	9.0651E-05	-0.54571	-0.00030004	549.8168409155928	46.859	0.40781	46.859	46.647	47.055	0					13	7	2	0	0	0	0.57806	1	16422	16422		26.268	26.268	1	4652900			21977	2025	15911	16026	21562	21562					0.07440219254613112
ILQDRLNQV	9	Unmodified	_ILQDRLNQV_					0	0	0		ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	MULTI-SECPEP	A375_MHC_IP_R2	2	550.2166748046875	2	549.81693	1097.61931	-0.72234	-0.00039715	0.16733	9.2001E-05	-0.55501	-0.00030515	549.8169420953999	46.034	0.3546	46.8	46.654	47.008	0.76519					15	6	3	0	0	0	0.40495	1	17243	17243		47.594	9.4188	1	5454000			21978	2025	15911	16026	21563	21563					0.07440219254613112
ILQEKLQEI	9	Unmodified	_ILQEKLQEI_					0	0	0		nc|ENSG00000054267|Q4LE39-2|ARID4B;ENSG00000054267|ENST00000264183|ARID4B	nc|ENSG00000054267|Q4LE39-2|ARID4B	nc|ENSG00000054267|Q4LE39-2|ARID4B	MULTI-SECPEP	A375_MHC_IP_R2	2	557.728515625	2	557.329339	1112.64412	-1.033	-0.00057569	-0.58105	-0.00032384	-1.614	-0.00089953	557.329199477722	57.824	0.55606	58.573	58.323	58.879	0.74894					24	10	3	0	0	0	0.15736	1	21855	21855		61.602	3.8799	1	4623900			21979	1257	15912	16027	21564	21564					0.0923085433732922
ILQEREYRL	9	Unmodified	_ILQEREYRL_					0	0	0		SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant;nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4	SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant;nc|ENSG00000127616|P51532-5|SMARCA4	SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	407.6311950683594	3	407.2313	1218.67207	-0.22599	-9.203E-05	0.3979	0.00016204	0.17191	7.0009E-05	407.2314525002651	40.286	0.55958	40.286	40.05	40.609	0					31	10	5	0	0	0	0.094655	1	13814	13814		55.235	21.013	1	19920000			21980	1714;4100	15913	16028	21565	21565					0.07148177317412774
ILQEREYRL	9	Unmodified	_ILQEREYRL_					0	0	0		SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant;nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4	SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant;nc|ENSG00000127616|P51532-5|SMARCA4	SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	407.63128662109375	3	407.2313	1218.67207	-0.03981	-1.6212E-05	-0.034755	-1.4153E-05	-0.074565	-3.0365E-05	407.2312296449231	39.422	0.55919	40.197	40.016	40.575	0.77451					30	10	4	0	0	0	0.02559	1	14559	14559		80.676	57.901	1	20880000			21981	1714;4100	15913	16028	21566	21566					0.07148177317412774
ILQLFQGDQI	10	Unmodified	_ILQLFQGDQI_					0	0	0		nc|ENSG00000110888|Q6IMN6|CAPRIN2;nc|ENSG00000110888|Q6IMN6-9|CAPRIN2;ENSG00000110888|ENST00000695402|CAPRIN2;nc|ENSG00000110888|Q6IMN6-2|CAPRIN2;ENST00000548676.5_1_12:30862838-30884436:-|nuORF;ENST00000454014.6_1_12:30862838-30884436:-|nuORF;nc|ENSG00000110888|Q6IMN6-4|CAPRIN2;ENST00000433722.6_1_12:30862838-30864693:-|nuORF;ENST00000537553.5_1_12:30862838-30863444:-|nuORF	nc|ENSG00000110888|Q6IMN6|CAPRIN2	nc|ENSG00000110888|Q6IMN6|CAPRIN2	MULTI-SECPEP	A375_MHC_IP_R1	1	588.2266235351562	2	587.826963	1173.63937	-0.25957	-0.00015258	0.095798	5.6313E-05	-0.16377	-9.6268E-05	587.8269767603165	103.86	1.1194	103.86	103.52	104.64	0					42	21	4	0	0	0	0.082288	1	38140	38140		85.272	12.304	1	6034700			21982	2955	15914	16029	21567	21567					0.05949970194569687
ILQLFQGDQI	10	Unmodified	_ILQLFQGDQI_					0	0	0		nc|ENSG00000110888|Q6IMN6|CAPRIN2;nc|ENSG00000110888|Q6IMN6-9|CAPRIN2;ENSG00000110888|ENST00000695402|CAPRIN2;nc|ENSG00000110888|Q6IMN6-2|CAPRIN2;ENST00000548676.5_1_12:30862838-30884436:-|nuORF;ENST00000454014.6_1_12:30862838-30884436:-|nuORF;nc|ENSG00000110888|Q6IMN6-4|CAPRIN2;ENST00000433722.6_1_12:30862838-30864693:-|nuORF;ENST00000537553.5_1_12:30862838-30863444:-|nuORF	nc|ENSG00000110888|Q6IMN6|CAPRIN2	nc|ENSG00000110888|Q6IMN6|CAPRIN2	MULTI-MSMS	A375_MHC_IP_R2	2	587.7754516601562	2	587.826963	1173.63937	-0.55668	-0.00032723	0.48131	0.00028293	-0.075376	-4.4308E-05	587.8269364666442	102.95	0.86409	103.71	103.28	104.14	0.76428					41	16	4	0	0	0	0.092645	1	38956	38956		65.235	1.2745	1	6845500			21983	2955	15914	16029	21568	21568					0.05949970194569687
ILQLNNNKI	9	Unmodified	_ILQLNNNKI_					0	0	0		ENSG00000136457|ENST00000508540|CHAD	ENSG00000136457|ENST00000508540|CHAD	ENSG00000136457|ENST00000508540|CHAD	MULTI-SECPEP	A375_MHC_IP_R2	2	535.6925659179688	2	535.321848	1068.62914	-1.0623	-0.00056866	0.21448	0.00011481	-0.8478	-0.00045385	535.3219574889836	35.365	0.40356	36.129	35.98	36.384	0.76338					11	7	2	0	0	0	0.78798	1	12839	12839		7.2892	1.5574	1	1576400			21984	4791	15915	16030	21569	21569					0.09757407259985484
ILQNGRLQI	9	Unmodified	_ILQNGRLQI_					0	0	0			REV__nc|ENSG00000116701|P19878-2|NCF2	REV__nc|ENSG00000116701|P19878-2|NCF2	MULTI-SECPEP	A375_MHC_IP_R1	1	527.7003784179688	2	527.822015	1053.62948	-0.66371	-0.00035032	1.0224	0.00053967	0.35873	0.00018934	527.822124071097	65.876	0.45618	65.876	65.616	66.072	0					16	8	2	0	0	0	0.4465	1	23818	23818		34.102	13.649	1	3791800	+		21985	17967	15916	16031	21570	21570					0.10480826979846825
ILQNGRLQI	9	Unmodified	_ILQNGRLQI_					0	0	0			REV__nc|ENSG00000116701|P19878-2|NCF2	REV__nc|ENSG00000116701|P19878-2|NCF2	MULTI-SECPEP	A375_MHC_IP_R2	2	527.7001953125	2	527.822015	1053.62948	-0.51041	-0.00026941	0.18232	9.6233E-05	-0.32809	-0.00017317	527.821663689163	64.878	0.45803	65.616	65.359	65.817	0.73812					16	8	2	0	0	0	0.40377	1	24592	24592		54.774	4.8406	1	3774100	+		21986	17967	15916	16031	21571	21571					0.10480826979846825
ILQNKKHKN	9	Unmodified	_ILQNKKHKN_					0	0	0		ENSG00000171262|ENST00000397609|FAM98B;ENST00000305752.4_1_15:38756353-38762648:+|nuORF;nc|ENSG00000171262|Q52LJ0-1|FAM98B	ENSG00000171262|ENST00000397609|FAM98B	ENSG00000171262|ENST00000397609|FAM98B	MULTI-SECPEP	A375_MHC_IP_R1	1	375.6169128417969	3	374.896252	1121.66693	0.106	3.9741E-05	0.90951	0.00034097	1.0155	0.00038071	374.89606409870726	28.012	0.30196	28.012	27.786	28.088	0					9	5	2	0	0	0	0.7911	1	8526	8526		2.2828	1.5062	1	2187900			21987	7589	15917	16032	21572	21572					0.11095918245473513
ILQPGTMMEV	10	Unmodified	_ILQPGTMMEV_					0	0	0			REV__ENSG00000205832|ENST00000444310|C16orf96	REV__ENSG00000205832|ENST00000444310|C16orf96	MSMS	A375_MHC_IP_R2	2	559.7343139648438	2	559.782853	1117.55115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.46	1	101.22	100.72	101.72	0.76278								0	0	0	0.14862	1	38092	38092		20.454	5.6154	1		+		21988	22586	15918	16033	21573	21573					-0.002921097119042315
ILQQGERALW	10	Unmodified	_ILQQGERALW_					0	0	0		ENSG00000198825|ENST00000650623|INPP5F;nc|ENSG00000198825|Q9Y2H2-3|INPP5F;nc|ENSG00000198825|Q9Y2H2-2|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MSMS	A375_MHC_IP_R1	1	607.3887329101562	2	607.33803	1212.66151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.234	1	69.234	68.734	69.734	0								0	0	0	0.14568	1	25120	25120		26.021	1.0297	1				21989	9337	15919	16034	21574	21574					0.063681946629913
ILQQHIATV	9	Unmodified	_ILQQHIATV_					0	0	0		nc|ENSG00000115239|Q9Y575-2|ASB3;ENSG00000115239|ENST00000263634|ASB3;nc|ENSG00000115239|Q9Y575-3|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	MULTI-SECPEP	A375_MHC_IP_R1	1	512.2030639648438	2	511.803291	1021.59203	0.04964	2.5406E-05	-0.47168	-0.00024141	-0.42204	-0.000216	511.802990006409	44.702	0.35516	44.702	44.523	44.878	0					12	6	2	0	0	0	0.13064	1	15631	15631		56.177	16.227	1	3278700			21990	3287	15920	16035	21575	21575					0.08209735714240196
ILQQHIATV	9	Unmodified	_ILQQHIATV_					0	0	0		nc|ENSG00000115239|Q9Y575-2|ASB3;ENSG00000115239|ENST00000263634|ASB3;nc|ENSG00000115239|Q9Y575-3|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	MULTI-SECPEP	A375_MHC_IP_R2	2	512.2024536132812	2	511.803291	1021.59203	-0.54648	-0.00027969	-1.4734	-0.00075408	-2.0199	-0.0010338	511.8030653449984	43.876	0.45366	44.645	44.43	44.883	0.76909					20	8	3	0	0	0	0.14572	1	16397	16397		62.573	24.599	1	4053100			21991	3287	15920	16035	21576	21576					0.08209735714240196
ILQQQARSY	9	Unmodified	_ILQQQARSY_					0	0	0			REV__ENST00000575500.5_2_17:78163648-78178987:+|nuORF	REV__ENST00000575500.5_2_17:78163648-78178987:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	369.9363098144531	3	369.536612	1105.58801	0.60765	0.00022455	-0.011171	-4.1282E-06	0.59647	0.00022042	369.5365634652875	39.073	0.70987	39.073	38.832	39.541	0					27	13	3	0	0	0	0.65246	1	13302	13302		15.248	0	1	12269000	+		21992	19277	15921	16036	21577	21577					0.03943646220523078
ILQSFIHDV	9	Unmodified	_ILQSFIHDV_					0	0	0		ENSG00000119042|ENST00000417098|SATB2;nc|ENSG00000119042|Q9UPW6-2|SATB2	ENSG00000119042|ENST00000417098|SATB2	ENSG00000119042|ENST00000417098|SATB2	MULTI-MSMS	A375_MHC_IP_R1	1	536.69482421875	2	536.295299	1070.57605	-0.59763	-0.00032051	-0.27125	-0.00014547	-0.86888	-0.00046597	536.2951116475708	82.701	0.91062	82.701	82.418	83.329	0					36	17	3	0	0	0	0.050868	1	30208	30208		63.961	2.6031	1	11280000			21993	3571	15922	16037	21578	21578					0.043580294773164496
ILQSFIHDV	9	Unmodified	_ILQSFIHDV_					0	0	0		ENSG00000119042|ENST00000417098|SATB2;nc|ENSG00000119042|Q9UPW6-2|SATB2	ENSG00000119042|ENST00000417098|SATB2	ENSG00000119042|ENST00000417098|SATB2	MULTI-SECPEP	A375_MHC_IP_R2	2	536.5650024414062	2	536.295299	1070.57605	-0.92879	-0.0004981	-0.11286	-6.0527E-05	-1.0416	-0.00055863	536.2952028248839	81.813	1.016	82.556	82.179	83.195	0.74293					40	19	4	0	0	0	0.35487	1	31163	31163		43.858	7.7313	1	12865000			21994	3571	15922	16037	21579	21579					0.043580294773164496
ILQTLIQRV	9	Unmodified	_ILQTLIQRV_					0	0	0		ENSG00000143970|ENST00000435504|ASXL2	ENSG00000143970|ENST00000435504|ASXL2	ENSG00000143970|ENST00000435504|ASXL2	MULTI-SECPEP	A375_MHC_IP_R2	2	542.6945190429688	2	542.347866	1082.68118	-0.81418	-0.00044157	0.95587	0.00051841	0.14169	7.6844E-05	542.3482946274271	78.024	0.35604	78.767	78.624	78.98	0.74293					9	6	2	0	0	0	0.73926	1	29633	29633		13.042	4.8869	1	694130			21995	5452	15923	16038	21580	21580					0.14314570673764138
ILRDWLYLHRY	11	Unmodified	_ILRDWLYLHRY_					0	0	0		nc|ENSG00000118707|Q9GZN2-2|TGIF2;TGIF2|p.K141Sfs*18|1|0.06|ENSG00000118707|chr20:36591136-36591136|A/-|frameshift_variant;ENSG00000118707|ENST00000373872|TGIF2	nc|ENSG00000118707|Q9GZN2-2|TGIF2	nc|ENSG00000118707|Q9GZN2-2|TGIF2	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1552734375	3	516.620899	1546.84087	-0.53429	-0.00027602	-1.8222	-0.0009414	-2.3565	-0.0012174	516.9546712702081	99.128	0.30363	99.128	98.964	99.268	0					14	5	3	0	0	0	0.99881	1	36393	36393		0.50596	0	1	1163100			21996	14564	15924	16039	21581	21581					0.08932078950920186
ILRGLGTL	8	Unmodified	_ILRGLGTL_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-SECPEP	A375_MHC_IP_R1	1	422.1764221191406	2	421.776545	841.538538	0.12673	5.3453E-05	-0.85055	-0.00035874	-0.72382	-0.00030529	421.776450537052	72.599	0.8624	72.599	72.321	73.184	0					26	16	2	0	0	0	0.2175	1	26404	26404		78.149	13.913	1	8744900	+		21997	17258	15925	16040	21582	21582					0.1114298300237806
ILRGLGTL	8	Unmodified	_ILRGLGTL_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	A375_MHC_IP_R2	2	422.17626953125	2	421.776545	841.538538	-0.40956	-0.00017274	-0.35277	-0.00014879	-0.76233	-0.00032153	421.77661002619743	71.555	0.86078	72.289	71.959	72.82	0.73421					28	16	3	0	0	0	0.16582	1	27091	27091		78.149	13.913	1	8375800	+		21998	17258	15925	16040	21583	21583					0.1114298300237806
ILRGLGTL	8	Unmodified	_ILRGLGTL_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	421.776545	841.538538	-0.40956	-0.00017274	-0.35277	-0.00014879	-0.76233	-0.00032153	421.77661002619743	71.555	0.86078	72.289	71.959	72.82	0.73421	-0.15519	0.00017701	NaN	78.149	28	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8375800	+		21999	17258	15925	16040							0.1114298300237806
ILRHQLKQA	9	Unmodified	_ILRHQLKQA_					0	0	0			REV__nc|ENSG00000241935|Q86XE5-3|HOGA1	REV__nc|ENSG00000241935|Q86XE5-3|HOGA1	MULTI-MSMS	A375_MHC_IP_R2	2	369.6168212890625	3	369.564614	1105.67201	0.14331	5.2962E-05	-0.11432	-4.225E-05	0.028984	1.0712E-05	369.56455275787516	35.936	0.86582	36.699	36.435	37.301	0.76338					40	16	4	0	0	0	0.68046	1	12961	12961		8.7454	0.58988	1	31950000	+		22000	22794	15926	16041	21584	21584					0.12340222108082344
ILRKETENL	9	Unmodified	_ILRKETENL_					0	0	0			REV__ENSG00000167889|ENST00000569840|MGAT5B	REV__ENSG00000167889|ENST00000569840|MGAT5B	MULTI-SECPEP	A375_MHC_IP_R1	1	558.2286376953125	2	558.324588	1114.63462	-0.79325	-0.00044289	0.062468	3.4878E-05	-0.73078	-0.00040801	558.3244476187346	134.4	1.7255	134.4	133.81	135.54	0					49	33	2	0	0	0	0.78351	1	51932	51932		8.5933	8.5933	1	2668600	+		22001	20802	15927	16042	21585	21585					0.081890860518115
ILRKETENL	9	Unmodified	_ILRKETENL_					0	0	0			REV__ENSG00000167889|ENST00000569840|MGAT5B	REV__ENSG00000167889|ENST00000569840|MGAT5B	MULTI-MATCH	A375_MHC_IP_R2	2		2	558.324588	1114.63462	-0.61953	-0.0003459	0.44116	0.00024631	-0.17837	-9.959E-05	558.3247012956315	134.32	1.4772	134.45	133.88	135.36	0.13901	0.029532	0.00022826	NaN	8.5933	41	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1863000	+		22002	20802	15927	16042							0.081890860518115
ILRKTQLPL	9	Unmodified	_ILRKTQLPL_					0	0	0		ENST00000474743.5_1_4:152147328-152147382:-|nuORF	ENST00000474743.5_1_4:152147328-152147382:-|nuORF	ENST00000474743.5_1_4:152147328-152147382:-|nuORF	MSMS	A375_MHC_IP_R2	2	541.3257446289062	2	541.358234	1080.70191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.13	1	87.863	87.363	88.363	0.733								0	0	0	0.15486	1	33135	33135		9.3474	1.4373	1				22003	12409	15928	16043	21586	21586					0.16479161053416647
ILRLIIFVGY	10	Unmodified	_ILRLIIFVGY_					0	0	0		tr|U7SV24|U7SV24_FUSNUMetal-dependentenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01486PE=4SV=1	tr|U7SV24|U7SV24_FUSNUMetal-dependentenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01486PE=4SV=1	tr|U7SV24|U7SV24_FUSNUMetal-dependentenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01486PE=4SV=1	MSMS	A375_MHC_IP_R1	1	603.70166015625	2	603.884084	1205.75362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.57	1	98.57	98.07	99.07	0								0	0	0	0.15508	1	36215	36215		4.3292	0	1				22004	29784	15929	16044	21587	21587					0.1589690474731924
ILRNWNFL	8	Unmodified	_ILRNWNFL_					0	0	0		nc|ENSG00000114423|Q13191-3|CBLB;nc|ENSG00000114423|Q13191-2|CBLB;ENSG00000114423|ENST00000394030|CBLB	nc|ENSG00000114423|Q13191-3|CBLB	nc|ENSG00000114423|Q13191-3|CBLB	MULTI-SECPEP	A375_MHC_IP_R2	2	537.7041015625	2	538.306001	1074.59745	-0.77376	-0.00041652	-0.53228	-0.00028653	-1.306	-0.00070305	538.305994070619	91.674	0.86132	92.409	92.122	92.983	0.7345					23	16	2	0	0	0	0.97144	1	34925	34925		9.3474	3.1417	1	2582400			22005	3220	15930	16045	21588	21588					0.06313459296711699
ILRPPVEKW	9	Unmodified	_ILRPPVEKW_					0	0	0		nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7	nc|ENSG00000083223|Q5VYS8-4|TUT7	nc|ENSG00000083223|Q5VYS8-4|TUT7	MULTI-MSMS	A375_MHC_IP_R1	1	380.2974853515625	3	379.897481	1136.67061	0.52455	0.00019928	-0.25699	-9.763E-05	0.26756	0.00010165	379.8973502808826	54.237	1.1653	54.237	53.605	54.771	0					61	22	4	0	0	0	0.068433	2	19249	19249;19423		57.108	30.019	1	8537100			22006	1773	15931	16046	21589;21590	21589					0.10774588019307885
ILRPPVEKW	9	Unmodified	_ILRPPVEKW_					0	0	0		nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7	nc|ENSG00000083223|Q5VYS8-4|TUT7	nc|ENSG00000083223|Q5VYS8-4|TUT7	MULTI-MSMS	A375_MHC_IP_R2	2	380.2972106933594	3	379.897481	1136.67061	-0.54171	-0.00020579	0.50109	0.00019036	-0.040618	-1.5431E-05	379.8976141959089	53.297	1.1212	54.048	53.436	54.557	0.75105					55	21	4	0	0	0	0.030222	2	20016	20016;20147		74.772	45.335	1	10520000			22007	1773	15931	16046	21591;21592	21591					0.10774588019307885
ILRQLFTV	8	Unmodified	_ILRQLFTV_					0	0	0			REV__nc|ENSG00000198589|P50851-2|LRBA	REV__nc|ENSG00000198589|P50851-2|LRBA	MSMS	A375_MHC_IP_R2	2	495.4583435058594	2	495.310752	988.606951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.675	1	76.416	75.916	76.916	0.74052								0	0	0	0.16876	1	28727	28727		19.439	1.304	1		+		22008	22386	15932	16047	21593	21593					0.11219227582228086
ILRQNEQRWRW	11	Unmodified	_ILRQNEQRWRW_					0	0	0		ENSG00000144481|ENST00000324695|TRPM8;nc|ENSG00000144481|Q7Z2W7-4|TRPM8;ENST00000444298.5_1_2:234856214-234923253:+|nuORF	ENSG00000144481|ENST00000324695|TRPM8	ENSG00000144481|ENST00000324695|TRPM8	MSMS	A375_MHC_IP_R1	1	792.9506225585938	2	792.92894	1583.84333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.43	1	123.43	122.93	123.93	0								0	0	0	0.16302	1	46120	46120		2.9952	1.6657	1				22009	5488	15933	16048	21594	21594					0.07475927408586358
ILSASWGLY	9	Unmodified	_ILSASWGLY_					0	0	0			REV__ENSG00000106404|ENST00000308344|CLDN15	REV__ENSG00000106404|ENST00000308344|CLDN15	MULTI-SECPEP	A375_MHC_IP_R2	2	505.67059326171875	2	505.271293	1008.52803	-0.71705	-0.00036231	0.38381	0.00019393	-0.33325	-0.00016838	505.27138353067676	74.178	0.60904	74.916	74.655	75.264	0.73751					21	11	2	0	0	0	0.52144	1	28165	28165		30.225	30.225	1	1900400	+		22010	17447	15934	16049	21595	21595					0.024109555572863428
ILSCGIFFW	9	Unmodified	_ILSCGIFFW_					0	0	0		ENSG00000183018|ENST00000329078|SPNS2	ENSG00000183018|ENST00000329078|SPNS2	ENSG00000183018|ENST00000329078|SPNS2	MULTI-MSMS	A375_MHC_IP_R1	1	543.677734375	2	543.278063	1084.54157	-0.7639	-0.00041501	1.0558	0.00057358	0.29189	0.00015858	543.2781385276879	129.48	0.20256	129.48	129.35	129.55	0					8	3	3	0	0	0	0.3054	1	49832	49832		30.225	2.0516	1	7759500			22011	8454	15935	16050	21596	21596					0.002684900648546318
ILSDNLRQV	9	Unmodified	_ILSDNLRQV_					0	0	0		nc|ENSG00000204713|P14373-2|TRIM27;ENSG00000204713|ENST00000377199|TRIM27	nc|ENSG00000204713|P14373-2|TRIM27	nc|ENSG00000204713|P14373-2|TRIM27	MULTI-SECPEP	A375_MHC_IP_R2	2	529.7037963867188	2	529.303655	1056.59276	-0.74046	-0.00039193	0.64903	0.00034354	-0.091425	-4.8391E-05	529.3041385205784	49.051	0.56092	49.809	49.485	50.046	0.75737					22	10	3	0	0	0	0.11849	1	18435	18435		61.602	9.9721	1	3385900			22012	9476	15936	16051	21597	21597					0.0667253036326656
ILSDVHNRL	9	Unmodified	_ILSDVHNRL_					0	0	0		ENSG00000103888|ENST00000394685|CEMIP	ENSG00000103888|ENST00000394685|CEMIP	ENSG00000103888|ENST00000394685|CEMIP	MULTI-MSMS	A375_MHC_IP_R1	1	356.604736328125	3	356.204974	1065.59309	-0.12906	-4.597E-05	-0.29625	-0.00010553	-0.42531	-0.0001515	356.20487781396196	33	0.50572	33	32.785	33.291	0					15	9	2	0	0	0	0.23226	2	10744	10689;10744		35.612	4.9088	1	3163900			22013	2473	15937	16052	21598;21599	21599					0.06291950083118536
ILSEHDGNC	9	Unmodified	_ILSEHDGNC_					0	0	0		ANGPT1|p.P48S|1|0.27|ENSG00000154188|chr8:107497417-107497417|G/A|missense_variant	ANGPT1|p.P48S|1|0.27|ENSG00000154188|chr8:107497417-107497417|G/A|missense_variant	ANGPT1|p.P48S|1|0.27|ENSG00000154188|chr8:107497417-107497417|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	494.1852111816406	2	494.213649	986.412745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.998	1	65.998	65.498	66.498	0								0	0	0	0.1521	1	23898	23898		18.135	4.6271	1				22014	126	15938	16053	21600	21600					-0.08100516636022803
ILSELIFLY	9	Unmodified	_ILSELIFLY_					0	0	0			REV__ENST00000531971.1_1_11:118656990-118657077:-|nuORF	REV__ENST00000531971.1_1_11:118656990-118657077:-|nuORF	MSMS	A375_MHC_IP_R1	1	555.8953857421875	2	555.825901	1109.63725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.163	1	79.163	78.663	79.663	0								0	0	0	0.15427	1	28894	28894		14.582	5.2343	1		+		22015	25861	15939	16054	21601	21601					0.08681541456758168
ILSESLHSL	9	Unmodified	_ILSESLHSL_					0	0	0		ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	MULTI-SECPEP	A375_MHC_IP_R1	1	500.1361083984375	2	499.779482	997.544411	-0.40587	-0.00020285	-0.57524	-0.00028749	-0.98111	-0.00049034	499.77930156126814	61.495	0.35831	61.495	61.227	61.585	0					11	6	2	0	0	0	0.07754	1	22161	22161		54.774	14.816	1	2504300			22016	2288	15940	16055	21602	21602					0.04554036723379795
ILSESLHSL	9	Unmodified	_ILSESLHSL_					0	0	0		ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	MULTI-SECPEP	A375_MHC_IP_R2	2	500.1792297363281	2	499.779482	997.544411	-0.85247	-0.00042605	-0.11752	-5.8735E-05	-0.97	-0.00048478	499.7794649456621	60.562	0.45799	61.307	61.057	61.515	0.74503					17	8	3	0	0	0	0.030624	1	22952	22952		100.37	25.949	1	2996500			22017	2288	15940	16055	21603	21603					0.04554036723379795
ILSEVQQAV	9	Unmodified	_ILSEVQQAV_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226555150-226558263:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	A375_MHC_IP_R1	1	987.5392456054688	1	986.551687	985.544411	0.038083	3.757E-05	0.72703	0.00071725	0.76511	0.00075482	986.552286941988	65.811	0.55713	65.811	65.565	66.122	0					17	10	2	0	0	0	0.27064	1	23792	23792		32.786	5.1569	1	4078800			22018	5434	15941	16056	21604	21604					0.05106036723384477
ILSEVQQAV	9	Unmodified	_ILSEVQQAV_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226555150-226558263:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	A375_MHC_IP_R2	2	987.5390625	1	986.551687	985.544411	-0.060983	-6.0163E-05	0.46523	0.00045897	0.40425	0.00039881	986.5520383801296	65.079	0.60962	65.817	65.613	66.222	0.73811					21	11	3	0	0	0	0.2487	1	24645	24645		34.402	3.1334	1	3183000			22019	5434	15941	16056	21605	21605					0.05106036723384477
ILSEVQQAV	9	Unmodified	_ILSEVQQAV_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226555150-226558263:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1786193847656	2	493.779482	985.544411	-0.57947	-0.00028613	0.4903	0.0002421	-0.089167	-4.4029E-05	493.77976359122124	65.053	1.321	65.791	65.613	66.934	0.73811					67	25	3	0	0	0	0.0043351	1	24650	24650		174.73	70.979	1	27988000			22020	5434	15941	16056	21606	21606					0.05106036723384477
ILSFADDLLT	10	Unmodified	_ILSFADDLLT_					0	0	0		USP29|p.P307L|1|0.3|ENSG00000131864|chr19:57129595-57129595|C/T|missense_variant	USP29|p.P307L|1|0.3|ENSG00000131864|chr19:57129595-57129595|C/T|missense_variant	USP29|p.P307L|1|0.3|ENSG00000131864|chr19:57129595-57129595|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	554.6998901367188	2	554.300247	1106.58594	-0.6413	-0.00035547	0.77148	0.00042763	0.13017	7.2156E-05	554.3002309736698	93.57	0.66083	94.314	93.956	94.616	0.74474					29	12	4	0	0	0	0.23156	1	35596	35596		46.021	0.32134	1	1932700			22021	30127	15942	16057	21607	21607					0.036911726920379806
ILSFADDLLT	10	Unmodified	_ILSFADDLLT_					0	0	0		USP29|p.P307L|1|0.3|ENSG00000131864|chr19:57129595-57129595|C/T|missense_variant	USP29|p.P307L|1|0.3|ENSG00000131864|chr19:57129595-57129595|C/T|missense_variant	USP29|p.P307L|1|0.3|ENSG00000131864|chr19:57129595-57129595|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	554.300247	1106.58594	-0.64393	-0.00035693	0.20753	0.00011504	-0.43639	-0.00024189	554.2999453343404	94.3	0.70921	94.3	93.89	94.599	0	-0.0071461	-0.00034532	NaN	46.021	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1326300			22022	30127	15942	16057							0.036911726920379806
ILSGCVAVQMI	11	Unmodified	_ILSGCVAVQMI_					0	0	0			REV__nc|ENSG00000150093|P05556-2|ITGB1	REV__nc|ENSG00000150093|P05556-2|ITGB1	MULTI-SECPEP	A375_MHC_IP_R2	2	379.28887939453125	3	378.540089	1132.59844	-0.073558	-2.7845E-05	0.37961	0.0001437	0.30605	0.00011585	378.540199794176	37.728	0.56448	38.503	38.279	38.843	0.77451					23	10	3	0	0	0	0.88538	1	13932	13932		10.315	0	1	4616500	+		22023	19707	15943	16058	21608	21608					0.03744169559081456
ILSGIGVSQV	10	Unmodified	_ILSGIGVSQV_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A	ENSG00000134910|ENST00000392708|STT3A	ENSG00000134910|ENST00000392708|STT3A	MULTI-SECPEP	A375_MHC_IP_R1	1	487.1893310546875	2	486.78985	971.565146	-0.45723	-0.00022257	-0.18579	-9.0439E-05	-0.64301	-0.00031301	486.78967346340386	86.334	0.75926	86.334	86.072	86.831	0					23	14	2	0	0	0	0.028212	1	31641	31641		103.42	31.497	1	7765900			22024	4626	15944	16059	21609	21609					0.07822627103053037
ILSGIGVSQV	10	Unmodified	_ILSGIGVSQV_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A	ENSG00000134910|ENST00000392708|STT3A	ENSG00000134910|ENST00000392708|STT3A	MULTI-SECPEP	A375_MHC_IP_R2	2	487.1896057128906	2	486.78985	971.565146	-0.42953	-0.00020909	-0.15311	-7.4534E-05	-0.58264	-0.00028362	486.789655627881	85.532	0.66113	86.268	85.984	86.645	0.73602					23	12	3	0	0	0	0.039352	1	32498	32498		100.09	17.561	1	10108000			22025	4626	15944	16059	21610	21610					0.07822627103053037
ILSHDSSQV	9	Unmodified	_ILSHDSSQV_					0	0	0		ENST00000460991.1_1_2:85066267-85069119:-|nuORF;ENSG00000186854|ENST00000409520|TRABD2A	ENST00000460991.1_1_2:85066267-85069119:-|nuORF	ENST00000460991.1_1_2:85066267-85069119:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	493.650634765625	2	493.251089	984.487624	-0.39753	-0.00019608	-0.63716	-0.00031428	-1.0347	-0.00051037	493.25081471636344	84.543	0.55607	85.279	85.018	85.574	0.73602					23	10	3	0	0	0	0.63811	1	32146	32146		12.532	1.7076	1	4200600			22026	8783	15945	16060	21611	21611					-0.005240108331349802
ILSHDSSQV	9	Unmodified	_ILSHDSSQV_					0	0	0		ENST00000460991.1_1_2:85066267-85069119:-|nuORF;ENSG00000186854|ENST00000409520|TRABD2A	ENST00000460991.1_1_2:85066267-85069119:-|nuORF	ENST00000460991.1_1_2:85066267-85069119:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	493.251089	984.487624	-0.39753	-0.00019608	-0.63716	-0.00031428	-1.0347	-0.00051037	493.25081471636344	84.543	0.55607	85.279	85.018	85.574	0.73602	-0.022561	-1.0299E-05	NaN	12.532	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4200600			22027	8783	15945	16060							-0.005240108331349802
ILSHLFSTV	9	Unmodified	_ILSHLFSTV_					0	0	0			REV__ENST00000506496.1_1_5:41929805-41930057:+|nuORF	REV__ENST00000506496.1_1_5:41929805-41930057:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	509.16314697265625	2	508.792392	1015.57023	-0.68082	-0.0003464	0.17303	8.8034E-05	-0.50779	-0.00025836	508.79241344109107	88.275	0.40411	89.006	88.774	89.178	0.7318					11	7	2	0	0	0	0.3607	1	33635	33635		26.884	2.8631	1	858260	+		22028	19781	15946	16061	21612	21612					0.06306930965672564
ILSKDGVLYV	10	Unmodified	_ILSKDGVLYV_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000454465.1_1_2:87398353-87423749:+|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MSMS	A375_MHC_IP_R1	1	554.9109497070312	2	553.826432	1105.63831	-0.55098	-0.00030515	0.032241	1.7856E-05	-0.51874	-0.00028729	553.8263463116531	74.663	0.9122	74.663	74.4	75.312	0					36	17	3	0	0	0	0.70312	1	27178	27178		17.113	3.2068	1	6036400			22029	6006	15947	16062	21613	21613					0.08971755825655237
ILSKDGVLYV	10	Unmodified	_ILSKDGVLYV_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000454465.1_1_2:87398353-87423749:+|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-SECPEP	A375_MHC_IP_R2	2	554.226318359375	2	553.826432	1105.63831	-0.7558	-0.00041858	0.21569	0.00011945	-0.54011	-0.00029913	553.8265632653497	73.834	0.81448	74.571	74.194	75.009	0.73724					42	15	4	0	0	0	0.40545	1	27992	27992		55.235	18.728	1	8341700			22030	6006	15947	16062	21614	21614					0.08971755825655237
ILSKVMEAR	9	Unmodified	_ILSKVMEAR_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	A375_MHC_IP_R2	2	523.7026977539062	2	523.804977	1045.5954	-0.51093	-0.00026763	0.22528	0.000118	-0.28565	-0.00014962	523.8050820046794	124.34	2.1207	124.67	124.34	126.46	0.32969					61	41	2	0	0	0	0.73804	1	49037	49037		3.5965	1.019	1	72225000			22031	3688	15948	16063	21615	21615					0.07442662496578123
ILSNESLVW	9	Unmodified	_ILSNESLVW_					0	0	0			REV__IL36B|p.G26E|2|0.38|ENSG00000136696|chr2:113031092-113031092|C/T|missense_variant	REV__IL36B|p.G26E|2|0.38|ENSG00000136696|chr2:113031092-113031092|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	531.18505859375	2	530.787307	1059.56006	-0.4982	-0.00026444	-1.6757	-0.00088945	-2.1739	-0.0011539	530.7854822136169	39.314	0.76091	39.314	38.832	39.592	0					31	14	4	0	0	0	0.050162	1	13424	13424		64.236	13.381	1	10531000	+		22032	26789	15949	16064	21616	21616					0.03266323240427482
ILSNIHEV	8	Unmodified	_ILSNIHEV_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	A375_MHC_IP_R1	1	463.1610412597656	2	462.761092	923.507631	-0.2536	-0.00011735	0.23396	0.00010827	-0.019641	-9.089E-06	462.7611561419695	43.88	0.50867	43.88	43.553	44.061	0					15	9	3	0	0	0	0.84748	1	15314	15314		28.487	1.6032	1	2824600			22033	6906	15950	16065	21617	21617					0.04281784897466423
ILSNIHEV	8	Unmodified	_ILSNIHEV_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	A375_MHC_IP_R2	2	463.1605224609375	2	462.761092	923.507631	-0.43912	-0.00020321	0.001204	5.5716E-07	-0.43792	-0.00020265	462.760971792839	42.977	0.35336	43.749	43.573	43.926	0.7724					10	6	2	0	0	0	0.87643	1	16057	16057		32.305	2.0807	1	2267000			22034	6906	15950	16065	21618	21618					0.04281784897466423
ILSPDFLSVAQ	11	Unmodified	_ILSPDFLSVAQ_					0	0	0		ENSG00000183346|ENST00000648843|CABCOCO1	ENSG00000183346|ENST00000648843|CABCOCO1	ENSG00000183346|ENST00000648843|CABCOCO1	MULTI-MSMS	A375_MHC_IP_R1	1	397.6204833984375	3	397.22029	1188.63904	0.04001	1.5893E-05	-0.37002	-0.00014698	-0.33001	-0.00013108	397.2203620206279	51.717	0.81456	51.717	51.27	52.085	0					44	15	4	0	0	0	0.72585	1	18373	18373		12.856	4.7004	1	7240000			22035	8487	15951	16066	21619	21619					0.05226550474708347
ILSPLNVFV	9	Unmodified	_ILSPLNVFV_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;ENST00000482114.1_1_4:123130334-123145991:+|nuORF	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-SECPEP	A375_MHC_IP_R1	1	502.033935546875	2	501.305136	1000.59572	-0.62387	-0.00031275	3.0716	0.0015398	2.4477	0.0012271	501.30844441330277	132.53	0.30585	132.53	132.33	132.64	0					8	5	2	0	0	0	0.55359	1	51132	51132		6.7232	0.51738	1	1462200			22036	5023	15952	16067	21620	21620					0.09544405488099983
ILSPWGAEV	9	Unmodified	_ILSPWGAEV_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111590511-111591024:+|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	A375_MHC_IP_R1	1	971.8970947265625	1	971.519659	970.512382	0.34557	0.00033573	0.18695	0.00018162	0.53252	0.00051735	971.5202912417119	111.82	0.40838	111.82	111.57	111.98	0					11	7	2	0	0	0	0.69507	1	40911	40911		19.257	6.7254	1	1572500			22037	5434	15953	16068	21621	21621					0.025946690402406603
ILSPWGAEV	9	Unmodified	_ILSPWGAEV_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111590511-111591024:+|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MATCH	A375_MHC_IP_R2	2		1	971.519659	970.512382	0.12136	0.0001179	0.17262	0.0001677	0.29398	0.0002856	971.5200537603141	110.99	0.4053	111.73	111.45	111.85	0.73692	-0.043124	-7.2734E-06	NaN	19.257	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1923500			22038	5434	15953	16068							0.025946690402406603
ILSRLPLLY	9	Unmodified	_ILSRLPLLY_					0	0	0		ENST00000261497.8_1_17:20905216-20905390:-|nuORF	ENST00000261497.8_1_17:20905216-20905390:-|nuORF	ENST00000261497.8_1_17:20905216-20905390:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	544.745361328125	2	544.347335	1086.68012	-0.20989	-0.00011425	-0.31581	-0.00017191	-0.5257	-0.00028616	544.3470676598615	115.89	0.60938	115.89	115.63	116.24	0					27	11	3	0	0	0	0.59098	1	42486	42486		27.629	7.2143	1	6049900			22039	10282	15954	16069	21622	21622					0.1402435630486707
ILSRLPLLY	9	Unmodified	_ILSRLPLLY_					0	0	0		ENST00000261497.8_1_17:20905216-20905390:-|nuORF	ENST00000261497.8_1_17:20905216-20905390:-|nuORF	ENST00000261497.8_1_17:20905216-20905390:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	544.746826171875	2	544.347335	1086.68012	-0.6176	-0.00033619	0.045166	2.4586E-05	-0.57244	-0.0003116	544.3472532531355	114.81	0.56223	115.5	115.22	115.78	0.68999					22	10	3	0	0	0	0.60917	1	43278	43278		25.399	3.6527	1	7747800			22040	10282	15954	16069	21623	21623					0.1402435630486707
ILSTARMNRV	10	Unmodified	_ILSTARMNRV_					0	0	0		nc|ENSG00000180902|Q8N465-2|D2HGDH;nc|ENSG00000180902|Q8N465-3|D2HGDH;ENSG00000180902|ENST00000321264|D2HGDH	nc|ENSG00000180902|Q8N465-2|D2HGDH	nc|ENSG00000180902|Q8N465-2|D2HGDH	MULTI-MSMS	A375_MHC_IP_R2	2	387.9570007324219	3	387.55713	1159.64956	-0.44273	-0.00017159	0.20664	8.0084E-05	-0.2361	-9.1501E-05	387.5572105535366	30.044	0.65799	30.754	30.347	31.005	0.71019					22	12	2	0	0	0	0.70174	1	10473	10473		11.518	1.3673	1	4288400			22041	8325	15955	16070	21624	21624					0.0761225464814288
ILSTRGVP	8	Unmodified	_ILSTRGVP_					0	0	0		ENST00000567887.5_2_1:39775352-39775975:+|nuORF	ENST00000567887.5_2_1:39775352-39775975:+|nuORF	ENST00000567887.5_2_1:39775352-39775975:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	421.9832458496094	2	421.758352	841.502152	-0.087914	-3.7078E-05	-0.045724	-1.9285E-05	-0.13364	-5.6363E-05	421.7583648553386	67.53	0.40752	68.266	68.104	68.511	0.73631					10	7	2	0	0	0	0.97144	1	25678	25678		14.582	2.0501	1	798580			22042	13575	15956	16071	21625	21625					0.07506106105665822
ILSTSYLPS	9	Unmodified	_ILSTSYLPS_					0	0	0			REV__ENSG00000140955|ENST00000315906|ADAD2	REV__ENSG00000140955|ENST00000315906|ADAD2	MULTI-MSMS	A375_MHC_IP_R2	2	491.1917419433594	2	490.768583	979.522613	-0.44947	-0.00022059	0.014811	7.2689E-06	-0.43466	-0.00021332	490.76846782973826	89.586	0.86246	90.317	89.836	90.699	0.7318					31	16	3	0	0	0	0.3054	1	34227	34227		30.225	1.738	1	3527700	+		22043	19235	15957	16072	21626	21626					0.032032319747941074
ILTDASTEKLW	11	Unmodified	_ILTDASTEKLW_					0	0	0			REV__MUC16|p.E583K|1|0.26|ENSG00000181143|chr19:8979392-8979392|C/T|missense_variant	REV__MUC16|p.E583K|1|0.26|ENSG00000181143|chr19:8979392-8979392|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	426.13690185546875	3	426.230966	1275.67107	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.002	1	39.002	38.502	39.502	0								0	0	0	0.16136	1	13284	13284		11.631	2.1013	1		+		22044	27048	15958	16073	21627	21627					0.044259181578581774
ILTDITKGV	9	Unmodified	_ILTDITKGV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	A375_MHC_IP_R1	1	480.6920471191406	2	480.292225	958.569897	-0.35968	-0.00017275	0.27781	0.00013343	-0.08187	-3.9321E-05	480.29232030208533	63.3	3.156	63.3	62.966	66.122	0					159	61	6	0	0	0	0.12748	1	23272	23272		45.74	9.6129	1	213480000			22045	7207	15959	16074	21628	21628					0.0889551124580521
ILTDITKGV	9	Unmodified	_ILTDITKGV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-SECPEP	A375_MHC_IP_R1	1	480.1131286621094	2	480.292225	958.569897	-0.70873	-0.0003404	0.3497	0.00016796	-0.35903	-0.00017244	480.292293543134	68.336	1.2685	68.336	67.5	68.769	0					38	24	2	0	0	0	0.24324	1	24756	24756		45.7	7.7256	1	2501000			22046	7207	15959	16074	21629	21629					0.0889551124580521
ILTDITKGV	9	Unmodified	_ILTDITKGV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	A375_MHC_IP_R2	2	480.69189453125	2	480.292225	958.569897	-0.63281	-0.00030393	0.17677	8.4903E-05	-0.45604	-0.00021903	480.29226446982625	62.462	3.4546	63.205	62.874	66.329	0.74263					154	67	5	0	0	0	0.001114	3	23621	23621;24067;24294		152.89	49.532	1	206910000			22047	7207	15959	16074	21630;21631;21632	21630					0.0889551124580521
ILTDITKGV	9	Unmodified	_ILTDITKGV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-SECPEP	A375_MHC_IP_R2	2	480.1127624511719	2	480.292225	958.569897	-0.56874	-0.00027316	-0.13316	-6.3955E-05	-0.7019	-0.00033712	480.2921018162741	67.362	1.4756	68.098	67.342	68.817	0.73631					40	28	3	0	0	0	0.14572	1	25584	25584		45.7	3.86	1	2846300			22048	7207	15959	16074	21633	21633					0.0889551124580521
ILTDMEEKV	9	Unmodified	_ILTDMEEKV_					0	0	0		nc|ENSG00000175309|Q8IUZ5-2|PHYKPL;nc|ENSG00000175309|Q8IUZ5-3|PHYKPL;ENST00000481811.5_1_5:177638924-177642644:-|nuORF;ENSG00000175309|ENST00000308158|PHYKPL	nc|ENSG00000175309|Q8IUZ5-2|PHYKPL	nc|ENSG00000175309|Q8IUZ5-2|PHYKPL	MULTI-MSMS	A375_MHC_IP_R1	1	540.7052612304688	2	539.278457	1076.54236	-0.39116	-0.00021094	0.42772	0.00023066	0.036564	1.9718E-05	539.2763816372229	92.63	1.0177	92.63	92.312	93.329	0					69	19	6	0	0	0	0.55818	1	34004	34004		16.942	0	1	11715000			22049	7949	15960	16075	21634	21634					0.007152399232609241
ILTEAIKAA	9	Unmodified	_ILTEAIKAA_					0	0	0		ENSG00000104356|ENST00000401707|POP1	ENSG00000104356|ENST00000401707|POP1	ENSG00000104356|ENST00000401707|POP1	MULTI-MSMS	A375_MHC_IP_R1	1	465.6867980957031	2	465.286943	928.559333	0.036176	1.6832E-05	-0.24792	-0.00011535	-0.21174	-9.8521E-05	465.2867869760367	48.068	0.30299	48.068	47.92	48.223	0					9	5	2	0	0	0	0.34064	1	16983	16983		27.629	7.1752	1	1994200			22050	2501	15961	16076	21635	21635					0.09219528591358994
ILTEEEANQY	10	Unmodified	_ILTEEEANQY_					0	0	0		tr|U7SZF2|U7SZF2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00804PE=4SV=1	tr|U7SZF2|U7SZF2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00804PE=4SV=1	tr|U7SZF2|U7SZF2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00804PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	606.669921875	2	605.285325	1208.5561	-0.57607	-0.00034868	0.62425	0.00037785	0.048182	2.9164E-05	605.2857840910784	62.092	2.2809	62.834	62.37	64.651	0.74263					103	44	4	0	0	0	0.69306	1	23472	23472		13.906	1.0334	1	11132000			22051	29858	15962	16077	21636	21636					-0.03983811043940477
ILTEIAAKA	9	Unmodified	_ILTEIAAKA_					0	0	0			REV__ENSG00000184735|ENST00000327968|DDX53	REV__ENSG00000184735|ENST00000327968|DDX53	MULTI-MSMS	A375_MHC_IP_R2	2	465.6869201660156	2	465.286943	928.559333	-0.45722	-0.00021274	0.3431	0.00015964	-0.11412	-5.3098E-05	465.287074823602	47.235	0.45863	47.996	47.766	48.225	0.76128					12	8	2	0	0	0	0.32092	1	17742	17742		29.082	0	1	2321800	+		22052	21837	15963	16078	21637	21637					0.09219528591370363
ILTEIAAKA	9	Unmodified	_ILTEIAAKA_					0	0	0			REV__ENSG00000184735|ENST00000327968|DDX53	REV__ENSG00000184735|ENST00000327968|DDX53	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	465.286943	928.559333	-0.45722	-0.00021274	0.3431	0.00015964	-0.11412	-5.3098E-05	465.287074823602	47.235	0.45863	47.996	47.766	48.225	0.76128	-0.035801	0.00041104	NaN	29.082	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2321800	+		22053	21837	15963	16078							0.09219528591370363
ILTEPHLAQI	10	Unmodified	_ILTEPHLAQI_					0	0	0			REV__ENSG00000132182|ENST00000254508|NUP210	REV__ENSG00000132182|ENST00000254508|NUP210	MULTI-MSMS	A375_MHC_IP_R2	2	379.28887939453125	3	378.888763	1133.64446	-0.11853	-4.4909E-05	0.10464	3.9647E-05	-0.013888	-5.2621E-06	378.88876004002515	37.95	0.41218	38.725	38.483	38.895	0.77451					19	7	3	0	0	0	0.37567	1	13932	13932		35.612	2.1674	1	8720500	+		22054	18639	15964	16079	21638	21638					0.08298274057187882
ILTERGYSF	9	Unmodified	_ILTERGYSF_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000570019.1_1_15:34666200-34666557:-|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000436287.1_1_1:224051789-224052101:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000159251|ENST00000290378|ACTC1;ENST00000436287.1_1_1:224051789-224052101:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	A375_MHC_IP_R1	1	543.2272338867188	2	543.284931	1084.55531	-0.61387	-0.00033351	-0.05247	-2.8506E-05	-0.66634	-0.00036201	543.2849791022766	61.05	3.3181	61.05	60.159	63.477	0					191	64	4	0	0	0	0.0042961	5	21959	21915;21959;22032;22039;22137		136.39	54.779	1	678090000			22055	1615;5418;11926	15965	16080	21639;21640;21641;21642;21643	21640					0.016414390976706272
ILTERGYSF	9	Unmodified	_ILTERGYSF_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000570019.1_1_15:34666200-34666557:-|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000436287.1_1_1:224051789-224052101:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000159251|ENST00000290378|ACTC1;ENST00000436287.1_1_1:224051789-224052101:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	A375_MHC_IP_R2	2	543.6846923828125	2	543.284931	1084.55531	-1.1292	-0.0006135	-0.016389	-8.9039E-06	-1.1456	-0.0006224	543.2850409334876	60.338	3.541	61.083	60.096	63.637	0.74503					219	69	6	0	0	0	0.0098859	3	22742	22742;22899;22966		117.76	46.627	1	720160000			22056	1615;5418;11926	15965	16080	21644;21645;21646	21644					0.016414390976706272
ILTETINTV	9	Unmodified	_ILTETINTV_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-SECPEP	A375_MHC_IP_R1	1	502.68603515625	2	502.28714	1002.55973	-0.41254	-0.00020721	-0.029744	-1.494E-05	-0.44228	-0.00022215	502.2869746574186	76.042	0.50496	76.042	75.714	76.219	0					21	9	3	0	0	0	0.47368	1	27709	27709		34.102	7.2188	1	4892400			22057	5030	15966	16081	21647	21647					0.05854903520582866
ILTETINTV	9	Unmodified	_ILTETINTV_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-MSMS	A375_MHC_IP_R2	2	502.6864929199219	2	502.28714	1002.55973	-0.6621	-0.00033256	-0.1786	-8.9708E-05	-0.8407	-0.00042227	502.28688891382586	75.303	0.45491	76.043	75.674	76.129	0.74006					19	8	3	0	0	0	0.050162	1	28557	28557		64.236	24.279	1	4004600			22058	5030	15966	16081	21648	21648					0.05854903520582866
ILTGKMLIN	9	Unmodified	_ILTGKMLIN_					0	0	0		tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1	tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1	tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	501.134765625	2	501.804445	1001.59434	-0.54123	-0.00027159	-0.16587	-8.3235E-05	-0.7071	-0.00035483	501.8043213695993	95.876	0.55904	96.627	96.398	96.957	0.75045					16	10	2	0	0	0	0.52144	1	36384	36384		11.64	0	1	1457800			22059	29577	15967	16082	21649	21649					0.09360448127677046
ILTHSLNSL	9	Unmodified	_ILTHSLNSL_					0	0	0		ENST00000521657.5_1_5:67522266-67522446:+|nuORF	ENST00000521657.5_1_5:67522266-67522446:+|nuORF	ENST00000521657.5_1_5:67522266-67522446:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	499.46002197265625	2	499.287474	996.560395	-0.63716	-0.00031813	0.24665	0.00012315	-0.39051	-0.00019498	499.28758347706923	55.384	0.8625	56.134	55.729	56.591	0.75075					19	16	2	0	0	0	0.47368	1	20977	20977		26.884	12.045	1	1276600			22060	13008	15968	16083	21650	21650					0.061977429602734446
ILTISVIGRW	10	Unmodified	_ILTISVIGRW_					0	0	0			REV__nc|ENSG00000175471|Q6DN14-4|MCTP1	REV__nc|ENSG00000175471|Q6DN14-4|MCTP1	MULTI-SECPEP	A375_MHC_IP_R2	2	579.1787719726562	2	579.355691	1156.69683	-0.49447	-0.00028647	-0.69205	-0.00040094	-1.1865	-0.00068741	579.3553241046751	56.186	0.25532	56.936	56.745	57	0.75014					7	4	2	0	0	0	0.91909	1	21185	21185		9.3831	5.7866	1	1051900	+		22061	21347	15969	16084	21651	21651					0.12474857190795774
ILTKEKEV	8	Unmodified	_ILTKEKEV_					0	0	0			REV__CENPE|p.R908K|1|0.34|ENSG00000138778|chr4:103158765-103158765|C/T|missense_variant	REV__CENPE|p.R908K|1|0.34|ENSG00000138778|chr4:103158765-103158765|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	480.69171142578125	2	480.292225	958.569897	-0.35968	-0.00017275	0.27781	0.00013343	-0.08187	-3.9321E-05	480.29232030208533	63.3	3.156	63.3	62.966	66.122	0					159	61	6	0	0	0	0.57209	1	23508	23508		46.021	0	1	213480000	+		22062	15635	15970	16085	21652	21652					0.08895511245816579
ILTKKDKEFNW	11	Unmodified	_ILTKKDKEFNW_					0	0	0			REV__tr|U7SPV4|U7SPV4_FUSNUSerineaminopeptidaseS33domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01715PE=4SV=1	REV__tr|U7SPV4|U7SPV4_FUSNUSerineaminopeptidaseS33domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01715PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	711.791259765625	2	711.393002	1420.77145	-0.8896	-0.00063285	-1.5396	-0.0010953	-2.4292	-0.0017281	711.3918208385533	136.49	0.61642	136.49	136.3	136.92	0					18	11	2	0	0	0	0.72649	1	52597	52597		12.241	2.8575	1	2054600	+		22063	28366	15971	16086	21653	21653					0.0778957521151824
ILTKKDKEFNW	11	Unmodified	_ILTKKDKEFNW_					0	0	0			REV__tr|U7SPV4|U7SPV4_FUSNUSerineaminopeptidaseS33domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01715PE=4SV=1	REV__tr|U7SPV4|U7SPV4_FUSNUSerineaminopeptidaseS33domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01715PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	711.791748046875	2	711.393002	1420.77145	-0.90075	-0.00064079	-0.8343	-0.00059352	-1.7351	-0.0012343	711.8947986699288	137.38	0.36053	137.38	137.23	137.59	0					14	6	3	0	0	0	0.73078	1	52904	52904		8.1555	0	1	1214800	+		22064	28366	15971	16086	21654	21654					0.0778957521151824
ILTKKDKEFNW	11	Unmodified	_ILTKKDKEFNW_					0	0	0			REV__tr|U7SPV4|U7SPV4_FUSNUSerineaminopeptidaseS33domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01715PE=4SV=1	REV__tr|U7SPV4|U7SPV4_FUSNUSerineaminopeptidaseS33domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01715PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	711.393002	1420.77145	-0.90075	-0.00064079	-0.8343	-0.00059352	-1.7351	-0.0012343	711.8947986699288	137.38	0.36053	137.38	137.23	137.59	0	-0.030944	0.00023516	NaN	8.1555	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1214800	+		22065	28366	15971	16086							0.0778957521151824
ILTKKDKEFNW	11	Unmodified	_ILTKKDKEFNW_					0	0	0			REV__tr|U7SPV4|U7SPV4_FUSNUSerineaminopeptidaseS33domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01715PE=4SV=1	REV__tr|U7SPV4|U7SPV4_FUSNUSerineaminopeptidaseS33domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01715PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	711.393002	1420.77145	-0.55629	-0.00039574	-1.7692	-0.0012586	-2.3255	-0.0016543	711.8941174152156	137.36	0.308	137.44	137.25	137.56	0.083969	0.030944	-0.001095	NaN	8.1555	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1192300	+		22066	28366	15971	16086							0.0778957521151824
ILTNEMNGL	9	Unmodified	_ILTNEMNGL_					0	0	0		ENSG00000130701|ENST00000252998|RBBP8NL	ENSG00000130701|ENST00000252998|RBBP8NL	ENSG00000130701|ENST00000252998|RBBP8NL	MULTI-MSMS	A375_MHC_IP_R1	1	502.6780090332031	2	502.757692	1003.50083	-0.57439	-0.00028878	0.30368	0.00015268	-0.27071	-0.0001361	502.7576443085408	84.5	0.50612	84.5	84.141	84.647	0					13	9	2	0	0	0	0.38603	1	30862	30862		25.399	1.3787	1	913940			22067	4263	15972	16087	21655	21655					-0.0007789604539993888
ILTPTSAIAAN	11	Unmodified	_ILTPTSAIAAN_					0	0	0			REV__nc|ENSG00000172766|Q6N069-4|NAA16	REV__nc|ENSG00000172766|Q6N069-4|NAA16	MULTI-MSMS	A375_MHC_IP_R2	2	537.7081909179688	2	536.305864	1070.59717	-0.78967	-0.0004235	0.19516	0.00010466	-0.59451	-0.00031884	536.3059437778771	46.112	2.079	46.877	46.303	48.382	0.76519					97	40	4	0	0	0	0.67989	1	17447	17447		17.113	3.2068	1	142600000	+		22068	21168	15973	16088	21656	21656					0.06469994786198185
ILTRGERL	8	Unmodified	_ILTRGERL_					0	0	0		nc|ENSG00000144452|Q86UK0-2|ABCA12;ENSG00000144452|ENST00000272895|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	MULTI-SECPEP	A375_MHC_IP_R2	2	479.695556640625	2	479.295633	956.576714	-0.46974	-0.00022514	0.20199	9.6813E-05	-0.26775	-0.00012833	479.2956502953471	42.951	0.50476	43.724	43.472	43.977	0.7724					18	9	3	0	0	0	0.8957	1	16007	16007		21.747	5.8995	1	5702600			22069	5487	15974	16089	21657	21657					0.09668868917037798
ILVAELYI	8	Unmodified	_ILVAELYI_					0	0	0			REV__ENST00000515845.5_2_5:102465128-102465254:+|nuORF	REV__ENST00000515845.5_2_5:102465128-102465254:+|nuORF	MSMS	A375_MHC_IP_R1	1	467.66595458984375	2	467.286411	932.55827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.62	1	142.62	142.12	143.12	0								0	0	0	0.16876	1	54722	54722		2.8892	0	1		+		22070	25664	15975	16090	21658	21658					0.08929314222450557
ILVDNMLIKG	10	Unmodified	_ILVDNMLIKG_					0	0	0		nc|ENSG00000150275|Q96QU1-6|PCDH15;ENSG00000150275|ENST00000644397|PCDH15;nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15;nc|ENSG00000150275|Q96QU1-3|PCDH15	nc|ENSG00000150275|Q96QU1-6|PCDH15	nc|ENSG00000150275|Q96QU1-6|PCDH15	MSMS	A375_MHC_IP_R1	1	558.365966796875	2	558.328285	1114.64202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.687	1	92.687	92.187	93.187	0								0	0	0	0.14179	1	34066	34066		29.082	1.4528	1				22071	5839	15976	16091	21659	21659					0.08928102327854504
ILVDWLVQV	9	Unmodified	_ILVDWLVQV_					0	0	0		ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	MULTI-MSMS	A375_MHC_IP_R1	1	543.223388671875	2	542.823692	1083.63283	-0.85887	-0.00046621	-0.10136	-5.5023E-05	-0.96023	-0.00052124	542.8235830847246	134.09	0.40489	134.09	133.97	134.37	0					14	7	3	0	0	0	0.0092511	1	51712	51712		128.37	128.37	1	23989000			22072	6246	15977	16092	21660	21660					0.09436077033842594
ILVDWLVQV	9	Unmodified	_ILVDWLVQV_					0	0	0		ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	MULTI-MSMS	A375_MHC_IP_R2	2	543.2070922851562	2	542.823692	1083.63283	-0.73365	-0.00039825	0.16903	9.1751E-05	-0.56463	-0.00030649	542.8237090423123	133.93	0.40903	134.1	133.96	134.37	0.16487					15	7	3	0	0	0	0.012447	2	52697	52697;52708		115.69	115.69	1	12993000			22073	6246	15977	16092	21661;21662	21661					0.09436077033842594
ILVEHISGV	9	Unmodified	_ILVEHISGV_					0	0	0		ENSG00000128829|ENST00000263791|EIF2AK4;nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;nc|ENSG00000128829|Q9P2K8-3|EIF2AK4	ENSG00000128829|ENST00000263791|EIF2AK4	ENSG00000128829|ENST00000263791|EIF2AK4	MULTI-MSMS	A375_MHC_IP_R1	1	484.18414306640625	2	483.784567	965.554582	-0.23826	-0.00011527	0.0040834	1.9755E-06	-0.23418	-0.00011329	483.78440978983156	62.141	0.61492	62.141	61.839	62.454	0					16	11	2	0	0	0	0.0099443	1	22433	22433		120.45	42.466	1	3184600			22074	4165	15978	16093	21663	21663					0.07042644448631563
ILVEHISGV	9	Unmodified	_ILVEHISGV_					0	0	0		ENSG00000128829|ENST00000263791|EIF2AK4;nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;nc|ENSG00000128829|Q9P2K8-3|EIF2AK4	ENSG00000128829|ENST00000263791|EIF2AK4	ENSG00000128829|ENST00000263791|EIF2AK4	MULTI-MSMS	A375_MHC_IP_R2	2	484.1838684082031	2	483.784567	965.554582	-0.90395	-0.00043732	0.82057	0.00039698	-0.083381	-4.0338E-05	483.784717065358	61.304	0.503	62.049	61.819	62.322	0.74504					19	9	3	0	0	0	0.0095277	1	23221	23221		108	47.607	1	3950600			22075	4165	15978	16093	21664	21664					0.07042644448631563
ILVFLRLVP	9	Unmodified	_ILVFLRLVP_					0	0	0			REV__ENST00000374825.8_1_6:32948646-32949051:+|nuORF	REV__ENST00000374825.8_1_6:32948646-32949051:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1070.4237060546875	1	1069.71321	1068.70594	0.0452	4.8352E-05	0.91089	0.00097439	0.95609	0.0010227	1069.7145430797195	119.58	0.96321	119.58	118.88	119.84	0					30	18	2	0	0	0	0.81039	1	43961	43961		0	0	1	93138000	+		22076	24116	15979	16094	21665	21665					0.17433250547151147
ILVSVAAGVSL	11	Unmodified	_ILVSVAAGVSL_					0	0	0		ENST00000482616.1_1_8:144689086-144691718:-|nuORF;nc|ENSG00000104524|Q53H96-2|PYCR3;ENSG00000104524|ENST00000495276|PYCR3	ENST00000482616.1_1_8:144689086-144691718:-|nuORF	ENST00000482616.1_1_8:144689086-144691718:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	514.20068359375	2	514.82115	1027.62775	-0.66055	-0.00034007	-0.24624	-0.00012677	-0.90679	-0.00046683	514.8208828414897	69.079	0.40652	69.814	69.626	70.032	0.73512					12	7	2	0	0	0	0.67995	1	26173	26173		32.786	17.537	1	1408700			22077	2519	15980	16095	21666	21666					0.11503773171239118
ILVYLKILL	9	Unmodified	_ILVYLKILL_					0	0	0		ENST00000369535.4_1_1:115247982-115248144:-|nuORF	ENST00000369535.4_1_1:115247982-115248144:-|nuORF	ENST00000369535.4_1_1:115247982-115248144:-|nuORF	MSMS	A375_MHC_IP_R1	1	363.2923278808594	3	363.254494	1086.74165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.446	1	19.446	18.946	19.946	0								0	0	0	0.15486	1	4828	4828		2.7352	1.9587	1				22078	11134	15981	16096	21667	21667					0.20175288004134018
ILWLMIEF	8	Unmodified	_ILWLMIEF_					0	0	0		nc|ENSG00000145850|Q96H15-2|TIMD4;ENSG00000145850|ENST00000274532|TIMD4	nc|ENSG00000145850|Q96H15-2|TIMD4	nc|ENSG00000145850|Q96H15-2|TIMD4	MULTI-MSMS	A375_MHC_IP_R1	1	355.57952880859375	3	355.533152	1063.57763	-0.23499	-8.3546E-05	1.4512	0.00051595	1.2162	0.0004324	355.5334927726978	26.869	1.4625	26.869	26.221	27.684	0					17	7	3	0	0	0	0.77603	1	8106	8106		6.7232	1.6756	1	2958200			22079	5587	15982	16097	21668	21668					0.048379472417309444
ILWLTWSACY	10	Unmodified	_ILWLTWSACY_					0	0	0		nc|ENSG00000153214|Q96K49-2|TMEM87B;ENSG00000153214|ENST00000283206|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	MSMS	A375_MHC_IP_R2	2	628.2946166992188	2	628.312635	1254.61072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.861	1	90.592	90.092	91.092	0.7318								0	0	0	0.15417	1	34192	34192		7.2892	1.0834	1				22080	6017	15983	16098	21669	21669					-0.006404707062301895
ILWPVEITL	9	Unmodified	_ILWPVEITL_					0	0	0		ENST00000372348.6_1_9:133729537-133729609:+|nuORF	ENST00000372348.6_1_9:133729537-133729609:+|nuORF	ENST00000372348.6_1_9:133729537-133729609:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	542.7254028320312	2	542.326068	1082.63758	-0.88046	-0.0004775	0.072765	3.9462E-05	-0.8077	-0.00043804	542.3259826135215	135.11	0.35597	135.11	134.98	135.34	0					17	6	4	0	0	0	0.0062982	1	52109	52109		146.01	88.536	1	16650000			22081	11195	15984	16099	21670	21670					0.09956961176612822
ILWPVEITL	9	Unmodified	_ILWPVEITL_					0	0	0		ENST00000372348.6_1_9:133729537-133729609:+|nuORF	ENST00000372348.6_1_9:133729537-133729609:+|nuORF	ENST00000372348.6_1_9:133729537-133729609:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	542.7255859375	2	542.326068	1082.63758	-0.70765	-0.00038378	0.074943	4.0644E-05	-0.6327	-0.00034313	542.3260236657354	134.99	0.35625	135.13	135	135.36	0.13901					13	6	3	0	0	0	0.00080018	1	53090	53090		179.23	101.25	1	13039000			22082	11195	15984	16099	21671	21671					0.09956961176612822
ILWSVCKIL	9	Unmodified	_ILWSVCKIL_					0	0	0			REV__ENST00000602845.1_1_3:196670295-196670385:+|nuORF	REV__ENST00000602845.1_1_3:196670295-196670385:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	538.2019653320312	2	537.822638	1073.63072	-0.69176	-0.00037204	-1.5781	-0.00084876	-2.2699	-0.0012208	537.8234867278521	53.453	0.15298	53.453	53.352	53.505	0					4	2	2	0	0	0	0.74651	1	19036	19036		8.5933	0.68312	1	761880	+		22083	26519	15985	16100	21672	21672					0.09685325024383928
ILWWIMGF	8	Unmodified	_ILWWIMGF_					0	0	0			REV__KCNJ6|p.I237Yfs*33|1|0.46|ENSG00000157542|chr21:37714448-37714449|-/A|frameshift_variant	REV__KCNJ6|p.I237Yfs*33|1|0.46|ENSG00000157542|chr21:37714448-37714449|-/A|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1937255859375	2	533.283149	1064.55174	-0.70189	-0.00037431	-2.8495	-0.0015196	-3.5514	-0.0018939	533.7825711417996	87.427	0.45878	87.427	87.237	87.696	0					10	8	2	0	0	0	0.90851	1	32135	32135		24.21	8.3628	1	1878200	+		22084	15744	15986	16101	21673	21673					0.022050977901017177
ILWYMRYNHNF	11	Unmodified	_ILWYMRYNHNF_					0	0	0		ENST00000603284.1_1_8:77317180-77317258:+|nuORF	ENST00000603284.1_1_8:77317180-77317258:+|nuORF	ENST00000603284.1_1_8:77317180-77317258:+|nuORF	MSMS	A375_MHC_IP_R2	2	519.65185546875	3	519.587089	1555.73944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.73	1	102.49	101.99	102.99	0.76428								0	0	0	0.16334	1	38558	38558		1.3296	0.82369	1				22085	13895	15987	16102	21674	21674					-0.016201157432760738
ILYAFYTIGRF	11	Unmodified	_ILYAFYTIGRF_					0	0	0			REV__ENST00000398922.6_1_11:62433857-62434520:+|nuORF	REV__ENST00000398922.6_1_11:62433857-62434520:+|nuORF	MSMS	A375_MHC_IP_R1	1	682.46923828125	2	682.374081	1362.73361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.962	1	47.962	47.462	48.462	0								0	0	0	0.16334	1	16892	16892		1.3295	0.13619	1		+		22086	22660	15988	16103	21675	21675					0.06675109016691749
ILYDKLEKI	9	Unmodified	_ILYDKLEKI_					0	0	0		nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	MULTI-MSMS	A375_MHC_IP_R1	1	379.29730224609375	3	378.897147	1133.66961	0.30715	0.00011638	0.025392	9.621E-06	0.33254	0.000126	378.8971456057768	59.123	0.56074	59.123	58.836	59.397	0					22	10	3	0	0	0	0.10518	1	21268	21268		49.742	11.127	1	2601800			22087	4699	15989	16104	21676	21676					0.1081232885976533
ILYDKLEKI	9	Unmodified	_ILYDKLEKI_					0	0	0		nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	MULTI-MSMS	A375_MHC_IP_R2	2	379.297119140625	3	378.897147	1133.66961	-0.20041	-7.5936E-05	0.177	6.7063E-05	-0.023416	-8.8724E-06	378.89712388721256	58.257	0.40755	59.006	58.779	59.187	0.74894					17	7	3	0	0	0	0.048392	1	22049	22049		64.927	22.092	1	2670600			22088	4699	15989	16104	21677	21677					0.1081232885976533
ILYGKIIHL	9	Unmodified	_ILYGKIIHL_					0	0	0		ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	MULTI-MSMS	A375_MHC_IP_R1	1	357.6302795410156	3	357.23046	1068.66955	0.040689	1.4535E-05	0.054026	1.93E-05	0.094715	3.3835E-05	357.2304266059795	74.373	1.0147	74.373	74.095	75.11	0					48	19	4	0	0	0	0.094655	1	27056	27056		51.63	32.268	1	15617000			22089	7344	15990	16105	21678	21678					0.13796373650416172
ILYGKIIHL	9	Unmodified	_ILYGKIIHL_					0	0	0		ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	MULTI-SECPEP	A375_MHC_IP_R1	1	535.7416381835938	2	535.342052	1068.66955	-0.69854	-0.00037396	0.30893	0.00016538	-0.38961	-0.00020858	535.3420852625844	74.375	0.50682	74.375	74.197	74.704	0					19	9	3	0	0	0	0.47674	1	27082	27082		39.957	39.957	1	3308700			22090	7344	15990	16105	21679	21679					0.13796373650416172
ILYGKIIHL	9	Unmodified	_ILYGKIIHL_					0	0	0		ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	MULTI-MSMS	A375_MHC_IP_R2	2	357.63037109375	3	357.23046	1068.66955	-0.15646	-5.5892E-05	-0.048441	-1.7304E-05	-0.2049	-7.3197E-05	357.23039831146195	73.331	0.91888	74.067	73.785	74.704	0.73541					47	17	4	0	0	0	0.094655	1	27800	27800		51.63	26.23	1	16349000			22091	7344	15990	16105	21680	21680					0.13796373650416172
ILYGKIIHL	9	Unmodified	_ILYGKIIHL_					0	0	0		ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	MULTI-SECPEP	A375_MHC_IP_R2	2	535.741943359375	2	535.342052	1068.66955	-0.76609	-0.00041012	0.061232	3.278E-05	-0.70486	-0.00037734	535.3420518530959	73.351	0.45801	74.086	73.836	74.294	0.73541					14	8	2	0	0	0	0.20451	1	27826	27826		74.423	34.465	1	2553100			22092	7344	15990	16105	21681	21681					0.13796373650416172
ILYHCFSLF	9	Unmodified	_ILYHCFSLF_					0	0	0		ENST00000357006.8_1_18:5290207-5290390:-|nuORF	ENST00000357006.8_1_18:5290207-5290390:-|nuORF	ENST00000357006.8_1_18:5290207-5290390:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	571.7363891601562	2	571.788795	1141.56304	-0.1236	-7.0675E-05	1.6174	0.00092484	1.4938	0.00085416	571.7905309528035	71.274	1.0172	71.274	70.648	71.665	0					41	19	3	0	0	0	0.1209	1	25827	25827		46.921	3.0626	1	7229000			22093	10976	15991	16106	21682	21682					-0.0020812490640764736
ILYIDITRRWN	11	Unmodified	_ILYIDITRRWN_					0	0	0		ENSG00000175764|ENST00000321582|TTLL11	ENSG00000175764|ENST00000321582|TTLL11	ENSG00000175764|ENST00000321582|TTLL11	MULTI-MSMS	A375_MHC_IP_R1	1	731.775634765625	2	731.911893	1461.80923	-0.71594	-0.00052401	0.96994	0.00070991	0.254	0.0001859	731.9123625512253	94.715	0.61368	94.715	94.343	94.956	0					22	11	3	0	0	0	0.7362	1	34866	34866		2.9952	0	1	2728100			22094	7980	15992	16107	21683	21683					0.09680086196976845
ILYNGLIEE	9	Unmodified	_ILYNGLIEE_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.S3306Afs*6|1|0.29|ENSG00000086758|chrX:53549078-53549079|-/ACGC|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MSMS	A375_MHC_IP_R1	1	532.4335327148438	2	532.28714	1062.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.022	1	87.022	86.522	87.522	0								0	0	0	0.15486	1	31923	31923		11.64	0.52583	1				22095	1846	15993	16108	21684	21684					0.03094903520582193
ILYPKTLFL	9	Unmodified	_ILYPKTLFL_					0	0	0		nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA;nc|ENSG00000138814|Q08209-5|PPP3CA	nc|ENSG00000138814|Q08209-3|PPP3CA	nc|ENSG00000138814|Q08209-3|PPP3CA	MULTI-SECPEP	A375_MHC_IP_R1	1	554.7442016601562	2	554.344261	1106.67397	-0.31953	-0.00017713	-0.028353	-1.5717E-05	-0.34789	-0.00019285	554.3441674004176	111.83	0.91627	111.83	111.46	112.38	0					32	17	4	0	0	0	0.22619	1	40983	40983		72.968	29.196	1	4834300			22096	5040	15994	16109	21685	21685					0.12489838073315696
ILYPKTLFL	9	Unmodified	_ILYPKTLFL_					0	0	0		nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA;nc|ENSG00000138814|Q08209-5|PPP3CA	nc|ENSG00000138814|Q08209-3|PPP3CA	nc|ENSG00000138814|Q08209-3|PPP3CA	MULTI-SECPEP	A375_MHC_IP_R2	2	554.74365234375	2	554.344261	1106.67397	-0.60458	-0.00033514	0.36204	0.0002007	-0.24253	-0.00013445	554.3442972430374	110.87	0.76543	111.61	111.29	112.06	0.73692					32	14	3	0	0	0	0.15736	1	41799	41799		79.596	18.239	1	4552200			22097	5040	15994	16109	21686	21686					0.12489838073315696
ILYRARPV	8	Unmodified	_ILYRARPV_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-SECPEP	A375_MHC_IP_R1	1	494.70849609375	2	494.308544	986.602535	-0.36531	-0.00018057	0.045195	2.234E-05	-0.32011	-0.00015823	494.30852457780856	73.969	0.86072	73.969	73.539	74.4	0					38	16	3	0	0	0	0.96296	1	26892	26892		5.7604	0	1	7063600			22098	4996	15995	16110	21687	21687					0.10869763159314516
ILYRPTQTV	9	Unmodified	_ILYRPTQTV_					0	0	0			REV__nc|ENSG00000211734|A0A578|TRBV5-1	REV__nc|ENSG00000211734|A0A578|TRBV5-1	MSMS	A375_MHC_IP_R2	2	545.6917724609375	2	545.816399	1089.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.453	1	41.227	40.727	41.727	0.77451								0	0	0	0.1008	1	14980	14980		41.84	20.093	1		+		22099	27468	15996	16111	21688	21688					0.0770200488568662
ILYSAKVL	8	Unmodified	_ILYSAKVL_					0	0	0			REV__ENST00000493328.5_1_1:35452707-35454621:-|nuORF	REV__ENST00000493328.5_1_1:35452707-35454621:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	454.18609619140625	2	453.786579	905.558604	-0.34296	-0.00015563	-0.035115	-1.5935E-05	-0.37807	-0.00017156	453.7865263268821	94.458	0.56107	94.458	94.191	94.752	0					21	10	3	0	0	0	0.85124	1	34707	34707		26.341	11.76	1	3543800	+		22100	25422	15997	16112	21689	21689					0.10204733942327948
ILYSKTEHL	9	Unmodified	_ILYSKTEHL_					0	0	0		ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	A375_MHC_IP_R1	1	368.94158935546875	3	368.541363	1102.60226	0.33952	0.00012513	-0.64103	-0.00023625	-0.30151	-0.00011112	368.54116853611936	31.67	0.66087	31.67	31.363	32.024	0					34	11	4	0	0	0	0.13728	2	10142	10142;10155		43.982	27.416	1	5770100			22101	1468	15998	16113	21690;21691	21690					0.05506298648788288
ILYSKTEHL	9	Unmodified	_ILYSKTEHL_					0	0	0		ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	A375_MHC_IP_R2	2	368.9414978027344	3	368.541363	1102.60226	0.2051	7.5589E-05	-0.83131	-0.00030637	-0.62621	-0.00023078	368.54114741152586	30.869	0.6572	31.587	31.266	31.923	0.71857					31	11	4	0	0	0	0.04093	1	10862	10862		67.838	37.135	1	8976300			22102	1468	15998	16113	21692	21692					0.05506298648788288
IMAQLPQEQKA	11	Unmodified	_IMAQLPQEQKA_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-SECPEP	A375_MHC_IP_R1	1	628.2194213867188	2	628.837005	1255.65946	-0.77124	-0.00048498	-1.2261	-0.00077101	-1.9973	-0.001256	629.3374420477688	41.023	0.40316	41.023	40.863	41.266	0					10	7	2	0	0	0	0.25959	1	14173	14173		53.317	19.872	1	934990			22103	1184	15999	16114	21693	21693					0.04185397862852369
IMAQLPQEQKA	11	Unmodified	_IMAQLPQEQKA_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-SECPEP	A375_MHC_IP_R2	2	628.2192993164062	2	628.837005	1255.65946	-0.88192	-0.00055459	-0.51796	-0.00032571	-1.3999	-0.0008803	628.8368051203087	40.379	0.25367	41.153	40.98	41.234	0.77451					7	4	2	0	0	0	0.85378	1	14963	14963		29.437	19.287	1	1215800			22104	1184	15999	16114	21694	21694					0.04185397862852369
IMCEQECEY	9	Unmodified	_IMCEQECEY_					0	0	0			REV__tr|U7T5I2|U7T5I2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00067PE=4SV=1	REV__tr|U7T5I2|U7T5I2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00067PE=4SV=1	MSMS	A375_MHC_IP_R2	2	574.0463256835938	2	574.20886	1146.40317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.664	1	93.403	92.903	93.903	0.73902								0	0	0	0.15486	1	35237	35237		4.756	0	1		+		22105	28825	16000	16115	21695	21695					-0.16417789028082552
IMCRECCEY	9	Unmodified	_IMCRECCEY_					0	0	0		ENST00000534803.1_1_11:35474916-35547133:-|nuORF;nc|ENSG00000149090|Q6UXH9-3|PAMR1;ENSG00000149090|ENST00000619888|PAMR1;nc|ENSG00000149090|Q6UXH9-2|PAMR1	ENST00000534803.1_1_11:35474916-35547133:-|nuORF	ENST00000534803.1_1_11:35474916-35547133:-|nuORF	MSMS	A375_MHC_IP_R1	1	575.224365234375	2	575.213423	1148.41229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.754	1	56.754	56.254	57.254	0								0	0	0	0.15486	1	20338	20338		5.2307	0	1				22106	5781	16001	16116	21696	21696					-0.1559771894339974
IMDAMLRKLY	10	Unmodified	_IMDAMLRKLY_					0	0	0		ENSG00000111254|ENST00000228850|AKAP3	ENSG00000111254|ENST00000228850|AKAP3	ENSG00000111254|ENST00000228850|AKAP3	MULTI-MSMS	A375_MHC_IP_R2	2	419.26995849609375	3	418.563005	1252.66719	-0.33825	-0.00014158	-0.59009	-0.00024699	-0.92834	-0.00038857	418.5628071737879	19.114	0.58413	19.717	19.452	20.037	0.60308					36	11	4	0	0	0	0.70027	1	5805	5805		12.175	12.175	1	16513000			22107	2976	16002	16117	21697	21697					0.050958338588088736
IMDATNILV	9	Unmodified	_IMDATNILV_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-SECPEP	A375_MHC_IP_R2	2	495.7103576660156	2	495.270435	988.526318	-0.47928	-0.00023737	1.4572	0.0007217	0.97789	0.00048432	495.2704183297532	108.11	0.51254	108.86	108.51	109.02	0.75436					22	9	3	0	0	0	0.24479	1	40793	40793		42.095	2.1372	1	1720300			22108	7325	16003	16118	21698	21698					0.031595784770274804
IMDDPAGNSY	10	Oxidation (M)	_IM(Oxidation (M))DDPAGNSY_		IM(1)DDPAGNSY		IM(83)DDPAGNSY	0	0	1		ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	MULTI-MSMS	A375_MHC_IP_R1	1	550.7020874023438	2	549.724046	1097.43354	-0.74296	-0.00040842	0.009407	5.1713E-06	-0.73355	-0.00040325	549.7240550586682	36.424	0.86229	36.424	36.033	36.895	0					42	16	4	0	0	0	0.026732	1	12241	12241		82.529	55.646	1	19621000			22109	2902	16004	16119	21699	21699		136			-0.11127971047017127
IMDDPAGNSY	10	Oxidation (M)	_IM(Oxidation (M))DDPAGNSY_		IM(1)DDPAGNSY		IM(160)DDPAGNSY	0	0	1		ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	MULTI-SECPEP	A375_MHC_IP_R2	2	550.1238403320312	2	549.724046	1097.43354	-0.9502	-0.00052235	0.25212	0.0001386	-0.69808	-0.00038375	549.724174205289	35.843	0.81534	36.606	36.233	37.048	0.76338					40	15	4	0	0	0	0.041243	1	12941	12941		155.03	128.14	1	24472000			22110	2902	16004	16119	21700	21700		136			-0.11127971047017127
IMDDPAGNSY	10	Unmodified	_IMDDPAGNSY_					0	0	0		ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	MULTI-SECPEP	A375_MHC_IP_R1	1	541.209716796875	2	541.726589	1081.43863	-0.51897	-0.00028114	-0.36931	-0.00020007	-0.88828	-0.0004812	541.7265241795226	51.169	0.81115	51.169	50.814	51.625	0					40	15	4	0	0	0	0.026214	1	18120	18120		106.94	76.304	1	12506000			22111	2902	16004	16120	21701	21701					-0.09883667184408296
IMDDPAGNSY	10	Unmodified	_IMDDPAGNSY_					0	0	0		ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	MULTI-MSMS	A375_MHC_IP_R2	2	542.1262817382812	2	541.726589	1081.43863	-0.95274	-0.00051612	0.15175	8.2206E-05	-0.80099	-0.00043392	541.726729288654	50.633	0.91058	51.387	51.006	51.917	0.75406					47	17	4	0	0	0	0.0097732	2	19001	19001;19190		92.653	54.679	1	19142000			22112	2902	16004	16120	21702;21703	21702					-0.09883667184408296
IMDLRKSL	8	Unmodified	_IMDLRKSL_					0	0	0			REV__tr|U7SUH8|U7SUH8_FUSNUHPr(Ser)kinase/phosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01425PE=3SV=1	REV__tr|U7SUH8|U7SUH8_FUSNUHPr(Ser)kinase/phosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01425PE=3SV=1	MSMS	A375_MHC_IP_R1	1	488.1907653808594	2	488.28642	974.558287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.29	1	109.29	108.79	109.79	0								0	0	0	0.16876	1	40088	40088		8.5933	0.68312	1		+		22113	28561	16005	16121	21704	21704					0.06998990950819461
IMDRIYKNV	9	Unmodified	_IMDRIYKNV_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4;ENSG00000123983|ENST00000357430|ACSL3	ENSG00000068366|ENST00000672401|ACSL4;ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	MULTI-SECPEP	A375_MHC_IP_R2	2	384.62799072265625	3	384.546231	1150.61686	-0.17823	-6.8538E-05	0.021488	8.2631E-06	-0.15674	-6.0275E-05	384.54623311800975	40.264	0.60954	41.039	40.828	41.438	0.77451					25	11	3	0	0	0	0.73926	1	14901	14901		5.7834	0	1	3839300			22114	3865;1458	16006	16122	21705	21705					0.047580475252971155
IMEDIILTL	9	Unmodified	_IMEDIILTL_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-SECPEP	A375_MHC_IP_R1	1	531.2007446289062	2	530.801568	1059.58858	-0.83045	-0.0004408	-0.50234	-0.00026664	-1.3328	-0.00070745	530.8012561492516	132.41	0.20372	132.41	132.28	132.49	0					5	3	2	0	0	0	0.63622	1	51085	51085		26.884	14.352	1	2716700			22115	2933	16007	16123	21706	21706					0.06117304825352221
IMEHNVFY	8	Unmodified	_IMEHNVFY_					0	0	0		PRKCA|p.S556F|1|0.25|ENSG00000154229|chr17:66786928-66786928|C/T|missense_variant	PRKCA|p.S556F|1|0.25|ENSG00000154229|chr17:66786928-66786928|C/T|missense_variant	PRKCA|p.S556F|1|0.25|ENSG00000154229|chr17:66786928-66786928|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	526.7000122070312	2	526.747127	1051.4797	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.722	1	87.722	87.222	88.222	0								0	0	0	0.16876	1	32194	32194		11.114	0.93107	1				22116	15228	16008	16124	21707	21707					-0.04397861354277666
IMETGIEHFR	10	Unmodified	_IMETGIEHFR_					0	0	0			REV__ENST00000606521.1_1_6:85452265-85472428:-|nuORF	REV__ENST00000606521.1_1_6:85452265-85472428:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	411.6264343261719	3	411.541257	1231.60194	0.013869	5.7078E-06	3.1269	0.0012868	3.1407	0.0012925	411.87558033181915	27.72	0.30296	28.399	28.301	28.604	0.67857					7	5	2	0	0	0	0.70615	1	9493	9493		9.544	0.16085	1	982130	+		22117	17758	16009	16125	21708	21708					-0.004594443426867656
IMEVELSVH	9	Unmodified	_IMEVELSVH_					0	0	0		ENSG00000174292|ENST00000688331|TNK1;nc|ENSG00000174292|Q13470|TNK1	ENSG00000174292|ENST00000688331|TNK1	ENSG00000174292|ENST00000688331|TNK1	MULTI-SECPEP	A375_MHC_IP_R2	2	353.27288818359375	3	352.85132	1055.53213	-0.26019	-9.1808E-05	-0.28142	-9.9301E-05	-0.54161	-0.00019111	353.18564938784016	31.287	0.51217	32.005	31.719	32.231	0.71857					20	9	3	0	0	0	0.69381	1	11052	11052		20.415	8.7742	1	3677800			22118	7868	16010	16126	21709	21709					0.006586769887007904
IMFLLSPVV	9	Unmodified	_IMFLLSPVV_					0	0	0			REV__ENST00000577511.1_2_17:72466240-72466369:+|nuORF	REV__ENST00000577511.1_2_17:72466240-72466369:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	509.72259521484375	2	509.803914	1017.59328	-0.12552	-6.3991E-05	0.13994	7.1343E-05	0.014422	7.3525E-06	509.8039049224328	116.25	1.1706	116.25	115.89	117.06	0					31	22	2	0	0	0	0.3054	1	42745	42745		30.225	3.8835	1	4572400	+		22119	26321	16011	16127	21710	21710					0.08518233758786664
IMFLLSPVV	9	Unmodified	_IMFLLSPVV_					0	0	0			REV__ENST00000577511.1_2_17:72466240-72466369:+|nuORF	REV__ENST00000577511.1_2_17:72466240-72466369:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	510.20367431640625	2	509.803914	1017.59328	-0.12552	-6.3991E-05	0.13994	7.1343E-05	0.014422	7.3525E-06	509.8039049224328	116.25	1.1706	116.25	115.89	117.06	0					31	22	2	0	0	0	0.52144	1	42780	42780		16.942	0	1	4572400	+		22120	26321	16011	16127	21711	21711					0.08518233758786664
IMFRDMQMLF	10	Unmodified	_IMFRDMQMLF_					0	0	0			REV__ENSG00000188636|ENST00000341255|RTL6	REV__ENSG00000188636|ENST00000341255|RTL6	MULTI-MSMS	A375_MHC_IP_R1	1	666.7182006835938	2	666.319079	1330.62361	-0.35376	-0.00023572	-0.9654	-0.00064327	-1.3192	-0.00087898	666.318240636854	21.173	0.25299	21.173	21.048	21.301	0					10	4	3	0	0	0	0.72416	1	5554	5554		1.4819	0.15237	1	2113800	+		22121	22103	16012	16128	21712	21712					-0.02848098909998953
IMKDKDNFW	9	Unmodified	_IMKDKDNFW_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-SECPEP	A375_MHC_IP_R2	2	399.9302673339844	3	399.53047	1195.56958	0.081504	3.2564E-05	-0.18012	-7.1964E-05	-0.098616	-3.94E-05	399.53029466294805	46.507	0.61015	47.272	47.058	47.668	0.76519					24	11	3	0	0	0	0.53098	1	17408	17408		33.445	16.879	1	4489000			22122	4950	16013	16129	21713	21713					-0.02038231745700614
IMKVIKFV	8	Unmodified	_IMKVIKFV_					0	0	0			REV__ENSG00000039123|ENST00000230640|MTREX	REV__ENSG00000039123|ENST00000230640|MTREX	MSMS	A375_MHC_IP_R1	1	489.7136535644531	2	489.314449	976.614345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.87	1	130.87	130.37	131.37	0								0	0	0	0.16876	1	50427	50427		0.69038	0	1		+		22123	16331	16014	16130	21714	21714					0.1251024385828714
IMLEALERV	9	Oxidation (M)	_IM(Oxidation (M))LEALERV_		IM(1)LEALERV		IM(62)LEALERV	0	0	1		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	A375_MHC_IP_R1	1	546.2035522460938	2	545.302267	1088.58998	-0.41927	-0.00022863	1.7231	0.00093963	1.3039	0.000711	545.3040454933085	78.375	1.2203	78.375	77.386	78.606	0					80	23	6	0	0	0	0.056914	1	28541	28541		61.602	15.902	1	69621000			22124	5454	16015	16131	21715	21715		291			0.04922938914091901
IMLEALERV	9	Oxidation (M)	_IM(Oxidation (M))LEALERV_		IM(1)LEALERV		IM(57)LEALERV	0	0	1		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	A375_MHC_IP_R1	1	545.2207641601562	2	545.302267	1088.58998	-0.61102	-0.00033319	-0.35376	-0.00019291	-0.96478	-0.0005261	545.3022564588115	80.41	3.9098	80.41	79.265	83.175	0					188	76	4	0	0	0	0.068071	2	29609	29121;29609		57.249	11.448	1	25513000			22125	5454	16015	16131	21716;21717	21717		291			0.04922938914091901
IMLEALERV	9	Oxidation (M)	_IM(Oxidation (M))LEALERV_		IM(1)LEALERV		IM(83)LEALERV	0	0	1		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-SECPEP	A375_MHC_IP_R1	1	544.6875610351562	2	545.302267	1088.58998	-0.36341	-0.00019817	0.094242	5.139E-05	-0.26917	-0.00014678	545.3024997965405	78.844	0.76053	78.844	78.556	79.316	0					50	14	4	0	0	0	0.062502	1	28804	28804		83.429	20.856	1	85197000			22126	5454	16015	16131	21718	21718		291			0.04922938914091901
IMLEALERV	9	Oxidation (M)	_IM(Oxidation (M))LEALERV_		IM(1)LEALERV		IM(90)LEALERV	0	0	1		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-SECPEP	A375_MHC_IP_R1	1	545.6222534179688	2	545.302267	1088.58998	-0.47976	-0.00026161	0.49753	0.0002713	0.01777	9.6901E-06	545.3027004941498	91.832	2.5902	91.832	91.249	93.84	0					96	50	3	0	0	0	0.053555	1	33753	33753		90.135	32.413	1	15924000			22127	5454	16015	16131	21719	21719		291			0.04922938914091901
IMLEALERV	9	Oxidation (M)	_IM(Oxidation (M))LEALERV_		IM(1)LEALERV		IM(130)LEALERV	0	0	1		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	A375_MHC_IP_R2	2	545.7350463867188	2	545.302267	1088.58998	-0.79196	-0.00043186	0.42099	0.00022956	-0.37097	-0.00020229	545.3026837779072	78.008	0.96884	78.751	78.416	79.385	0.74293					46	18	3	0	0	0	0.0083527	1	29612	29612		128.93	46.403	1	88124000			22128	5454	16015	16131	21720	21720		291			0.04922938914091901
IMLEALERV	9	Oxidation (M)	_IM(Oxidation (M))LEALERV_		IM(1)LEALERV		IM(90)LEALERV	0	0	1		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	A375_MHC_IP_R2	2	545.8325805664062	2	545.302267	1088.58998	-0.75498	-0.00041169	-0.66236	-0.00036119	-1.4173	-0.00077288	545.3021009059779	79.481	4.0627	80.226	79.236	83.299	0.74473					182	79	4	0	0	0	0.014789	2	30321	30245;30321		90.135	26.174	1	22194000			22129	5454	16015	16131	21721;21722	21722		291			0.04922938914091901
IMLEALERV	9	Oxidation (M)	_IM(Oxidation (M))LEALERV_		IM(1)LEALERV		IM(87)LEALERV	0	0	1		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-SECPEP	A375_MHC_IP_R2	2	545.18994140625	2	545.302267	1088.58998	-0.81018	-0.00044179	1.7666	0.00096332	0.9564	0.00052153	545.3039303496943	77.455	1.0144	78.198	77.453	78.468	0.74293					68	19	6	0	0	0	0.058501	1	29436	29436		87.258	31.755	1	96461000			22130	5454	16015	16131	21723	21723		291			0.04922938914091901
IMLEALERV	9	Oxidation (M)	_IM(Oxidation (M))LEALERV_		IM(1)LEALERV		IM(90)LEALERV	0	0	1		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-SECPEP	A375_MHC_IP_R2	2	545.7018432617188	2	545.302267	1088.58998	-0.70381	-0.00038379	-0.023603	-1.2871E-05	-0.72742	-0.00039666	545.3023425275376	91.006	1.57	91.741	91.16	92.729	0.7345					75	30	4	0	0	0	0.053555	1	34574	34574		90.135	26.174	1	21144000			22131	5454	16015	16131	21724	21724		291			0.04922938914091901
IMLEALERV	9	Unmodified	_IMLEALERV_					0	0	0		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	A375_MHC_IP_R2	2	537.7041015625	2	537.30481	1072.59507	-0.77299	-0.00041533	0.23896	0.0001284	-0.53403	-0.00028693	537.3049728685919	91.007	3.4973	91.742	91.058	94.556	0.73451					165	68	5	0	0	0	0.16945	1	34925	34925		40.239	7.4535	1	121920000			22132	5454	16015	16132	21725	21725					0.06167242776700732
IMLQKRKRYKN	11	Unmodified	_IMLQKRKRYKN_					0	0	0		PACS1|p.R196K|1|0.58|ENSG00000175115|chr11:66211186-66211186|G/A|missense_variant	PACS1|p.R196K|1|0.58|ENSG00000175115|chr11:66211186-66211186|G/A|missense_variant	PACS1|p.R196K|1|0.58|ENSG00000175115|chr11:66211186-66211186|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	739.1575927734375	2	739.442837	1476.87112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.42	1	103.42	102.92	103.92	0								0	0	0	0.16331	1	37987	37987		1.4819	0	1				22133	15105	16016	16133	21726	21726					0.1517611434446735
IMLSEERWIR	10	Unmodified	_IMLSEERWIR_					0	0	0			REV__ENST00000510520.5_1_5:10442060-10472024:+|nuORF	REV__ENST00000510520.5_1_5:10442060-10472024:+|nuORF	MSMS	A375_MHC_IP_R1	1	444.9722595214844	3	444.90794	1331.70199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.726	1	65.726	65.226	66.226	0								0	0	0	0.15597	1	23803	23803		1.4551	0	1		+		22134	25603	16017	16134	21727	21727					0.049407929911012616
IMQAVTLIL	9	Unmodified	_IMQAVTLIL_					0	0	0		ENST00000460495.5_1_3:137956301-138014731:+|nuORF;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8;nc|ENSG00000114098|Q8IUR7-8|ARMC8;ENST00000466762.1_1_3:137982955-138014731:+|nuORF	ENST00000460495.5_1_3:137956301-138014731:+|nuORF	ENST00000460495.5_1_3:137956301-138014731:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	500.6823425292969	2	501.306821	1000.59909	-0.55417	-0.00027781	1.5714	0.00078776	1.0172	0.00050995	501.3071052399374	126.41	0.25163	126.71	126.53	126.78	0.2951					7	4	2	0	0	0	0.74651	1	49410	49410		2.0598	0	1	3285800			22135	3196	16018	16135	21728	21728					0.09881332270458643
IMRIFGFRLW	10	Unmodified	_IMRIFGFRLW_					0	0	0		ENST00000443565.1_1_1:81106969-81107053:+|nuORF	ENST00000443565.1_1_1:81106969-81107053:+|nuORF	ENST00000443565.1_1_1:81106969-81107053:+|nuORF	MSMS	A375_MHC_IP_R1	1	446.9627990722656	3	446.921632	1337.74307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.88	1	42.88	42.38	43.38	0								0	0	0	0.15283	1	14878	14878		6.6304	2.754	1				22136	12006	16019	16136	21729	21729					0.08770598821251951
IMRKPERFLW	10	Unmodified	_IMRKPERFLW_					0	0	0		ENST00000257836.3_1_11:32858308-32861670:+|nuORF	ENST00000257836.3_1_11:32858308-32861670:+|nuORF	ENST00000257836.3_1_11:32858308-32861670:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	459.6599426269531	3	459.260425	1374.75945	-0.33403	-0.0001534	-0.61899	-0.00028428	-0.95301	-0.00043768	459.2599286119216	132.27	2.1337	132.46	131.9	134.03	0.18953					111	41	4	0	0	0	0.71944	1	52395	52395		1.7423	0	1	32572000			22137	10251	16020	16137	21730	21730					0.08705679987338044
IMRRALMIRHR	11	Unmodified	_IMRRALMIRHR_					0	0	0			REV__ENST00000548924.5_1_12:70901743-70904223:+|nuORF	REV__ENST00000548924.5_1_12:70901743-70904223:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	726.8390502929688	2	726.929374	1451.8442	-0.60545	-0.00044012	0.48397	0.00035181	-0.12148	-8.8306E-05	726.9296107837091	142.35	0.60796	142.38	141.98	142.58	0.030731					31	11	4	0	0	0	1.0014	1	55573	55573		0	0	1	5011400	+		22138	26020	16021	16138	21731	21731					0.1363472725226984
IMTKILLLHR	10	Unmodified	_IMTKILLLHR_					0	0	0			REV__ENST00000507256.1_1_1:154407503-154427053:+|nuORF	REV__ENST00000507256.1_1_1:154407503-154427053:+|nuORF	MSMS	A375_MHC_IP_R1	1	413.2908630371094	3	413.265288	1236.77403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.267	1	20.267	19.767	20.767	0								0	0	0	0.15547	1	5175	5175		3.0723	1.7426	1		+		22139	25564	16022	16139	21732	21732					0.16511752135488678
IMTYDEFEYCW	11	Unmodified	_IMTYDEFEYCW_					0	0	0		ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B	ENSG00000179750|ENST00000333467|APOBEC3B	ENSG00000179750|ENST00000333467|APOBEC3B	MSMS	A375_MHC_IP_R1	1	750.6962280273438	2	750.296521	1498.57849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.44	1	137.44	136.94	137.94	0								0	0	0	0.1624	1	52905	52905		6.2058	4.7239	1				22140	8248	16023	16140	21733	21733					-0.1508567096218485
IMVAKLTV	8	Unmodified	_IMVAKLTV_					0	0	0		ZNF85|p.P75L|1|0.09|ENSG00000105750|chr19:20935042-20935042|C/T|missense_variant	ZNF85|p.P75L|1|0.09|ENSG00000105750|chr19:20935042-20935042|C/T|missense_variant	ZNF85|p.P75L|1|0.09|ENSG00000105750|chr19:20935042-20935042|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	438.1751708984375	2	437.775157	873.53576	-0.0087576	-3.8339E-06	-0.13711	-6.0024E-05	-0.14587	-6.3858E-05	437.7750259586313	54.389	0.45558	54.389	54.163	54.619	0					14	8	2	0	0	0	0.90224	1	19455	19455		19.439	0	1	2097400			22141	30251	16024	16141	21734	21734					0.093933915532034
IMWRRRQYLRI	11	Unmodified	_IMWRRRQYLRI_					0	0	0			REV__ENSG00000186160|ENST00000334194|CYP4Z1	REV__ENSG00000186160|ENST00000334194|CYP4Z1	MULTI-SECPEP	A375_MHC_IP_R1	1	795.6810302734375	2	795.961729	1589.9089	-0.78287	-0.00062314	1.0389	0.0008269	0.25599	0.00020376	795.9623633129855	143.11	0.35181	143.11	142.89	143.24	0					16	6	3	0	0	0	1.0014	1	54892	54892		0.30703	0.30703	1	798270	+		22142	21951	16025	16142	21735	21735					0.13754625329943337
IMWRRRQYLRI	11	Unmodified	_IMWRRRQYLRI_					0	0	0			REV__ENSG00000186160|ENST00000334194|CYP4Z1	REV__ENSG00000186160|ENST00000334194|CYP4Z1	MULTI-MSMS	A375_MHC_IP_R2	2	796.3614501953125	2	795.961729	1589.9089	-0.75212	-0.00059866	1.0507	0.00083629	0.29855	0.00023763	795.9623331165058	143.11	0.50484	143.14	142.84	143.34	0.030731					15	9	2	0	0	0	0.73934	1	55976	55976		0	0	1	1078900	+		22143	21951	16025	16142	21736	21736					0.13754625329943337
IMWRRRQYLRI	11	Unmodified	_IMWRRRQYLRI_					0	0	0			REV__ENSG00000186160|ENST00000334194|CYP4Z1	REV__ENSG00000186160|ENST00000334194|CYP4Z1	MULTI-SECPEP	A375_MHC_IP_R2	2	795.680908203125	2	795.961729	1589.9089	-0.75212	-0.00059866	1.0507	0.00083629	0.29855	0.00023763	795.9623331165058	143.11	0.50484	143.14	142.84	143.34	0.030731					15	9	2	0	0	0	1.0014	1	55930	55930		0.30703	0.30703	1	1078900	+		22144	21951	16025	16142	21737	21737					0.13754625329943337
IMYEDEDY	8	Unmodified	_IMYEDEDY_					0	0	0			REV__nc|ENSG00000077522|P35609-2|ACTN2	REV__nc|ENSG00000077522|P35609-2|ACTN2	MSMS	A375_MHC_IP_R2	2	539.2080078125	2	539.207698	1076.40084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.642	1	42.417	41.917	42.917	0.77451								0	0	0	0.16876	1	15459	15459		6.3541	1.1234	1		+		22145	16695	16026	16143	21738	21738					-0.13430178169869578
INAENERIG	9	Unmodified	_INAENERIG_					0	0	0		ENST00000467220.1_1_7:158683991-158695375:+|nuORF;ENSG00000126870|ENST00000407559|DYNC2I1	ENST00000467220.1_1_7:158683991-158695375:+|nuORF	ENST00000467220.1_1_7:158683991-158695375:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	508.67999267578125	2	508.261988	1014.50942	-0.93762	-0.00047656	1.0425	0.00052986	0.10487	5.3302E-05	508.7623664178621	49.11	0.30495	49.868	49.69	49.995	0.75736					6	5	2	0	0	0	0.32092	1	18410	18410		29.082	1.4528	1	1091500			22146	4066	16027	16144	21739	21739					0.0027479391542328813
INAFYIHWYLH	11	Unmodified	_INAFYIHWYLH_					0	0	0		nc|ENSG00000211697|A0A0B4J1U4|TRGV5	nc|ENSG00000211697|A0A0B4J1U4|TRGV5	nc|ENSG00000211697|A0A0B4J1U4|TRGV5	MULTI-MSMS	A375_MHC_IP_R1	1	739.2757568359375	2	738.874779	1475.73501	-0.50776	-0.00037517	0.95034	0.00070218	0.44258	0.00032701	738.8754324965095	77.69	0.45886	77.69	77.436	77.895	0					21	8	3	0	0	0	0.59093	1	28306	28306		24.021	2.4836	1	5282200			22147	14875	16028	16145	21740	21740					0.01616743105455498
INANLRYRV	9	Unmodified	_INANLRYRV_					0	0	0		nc|ENSG00000075275|Q9NYQ6-2|CELSR1;nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;CELSR1|p.G614Afs*54|1|0.18|ENSG00000075275|chr22:46535330-46535330|C/-|frameshift_variant	nc|ENSG00000075275|Q9NYQ6-2|CELSR1	nc|ENSG00000075275|Q9NYQ6-2|CELSR1	MULTI-SECPEP	A375_MHC_IP_R1	1	559.211181640625	2	559.825089	1117.63563	-0.2817	-0.0001577	-0.90464	-0.00050644	-1.1863	-0.00066414	559.824468203048	35.586	0.35778	35.586	35.472	35.83	0					9	6	2	0	0	0	0.76187	1	11807	11807		7.2892	7.2892	1	1449700			22148	1605	16029	16146	21741	21741					0.08151345211376793
INANNEVLY	9	Unmodified	_INANNEVLY_					0	0	0			REV__ENSG00000169018|ENST00000306917|FEM1B	REV__ENSG00000169018|ENST00000306917|FEM1B	MULTI-SECPEP	A375_MHC_IP_R1	1	525.66650390625	2	525.266739	1048.51892	-0.35344	-0.00018565	-0.22488	-0.00011812	-0.57832	-0.00030377	525.2666459767224	54.423	1.571	54.423	53.555	55.126	0					43	30	2	0	0	0	0.24548	1	19417	19417		43.858	0	1	17763000	+		22149	20899	16030	16147	21742	21742					-0.00339437799038933
INANNEVLY	9	Unmodified	_INANNEVLY_					0	0	0			REV__ENSG00000169018|ENST00000306917|FEM1B	REV__ENSG00000169018|ENST00000306917|FEM1B	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	525.266739	1048.51892	-0.955	-0.00050163	-0.25251	-0.00013263	-1.2075	-0.00063426	525.2666523301855	53.767	1.7846	54.518	53.688	55.473	0.75105	0.047529	-1.6019E-05	NaN	43.858	61	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23164000	+		22150	20899	16030	16147							-0.00339437799038933
INAPYQFY	8	Unmodified	_INAPYQFY_					0	0	0			REV__ENSG00000146070|ENST00000274793|PLA2G7	REV__ENSG00000146070|ENST00000274793|PLA2G7	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9802551269531	2	508.247818	1014.48108	-1.0088	-0.0005127	-0.54272	-0.00027584	-1.5515	-0.00078854	508.2477551025939	49.782	0.30598	50.536	50.344	50.65	0.75406					8	5	2	0	0	0	0.93416	1	18726	18726		9.3474	4.1168	1	640550	+		22151	19515	16031	16148	21743	21743					-0.025579039938634196
INCKRLKSM	9	Unmodified	_INCKRLKSM_					0	0	0		ENSG00000160791|ENST00000292303|CCR5	ENSG00000160791|ENST00000292303|CCR5	ENSG00000160791|ENST00000292303|CCR5	MULTI-SECPEP	A375_MHC_IP_R2	2	364.5985412597656	3	364.872061	1091.59435	-0.47968	-0.00017502	-2.0768	-0.00075776	-2.5565	-0.00093278	365.20642057264376	33.596	0.20283	34.348	34.247	34.45	0.75225					5	3	2	0	0	0	0.77396	1	12021	12021		6.6304	0	1	758210			22152	6443	16032	16149	21744	21744					0.052221248560272215
INCRVCQSL	9	Unmodified	_INCRVCQSL_					0	0	0		ENSG00000155099|ENST00000285419|PIP4P2	ENSG00000155099|ENST00000285419|PIP4P2	ENSG00000155099|ENST00000285419|PIP4P2	MULTI-SECPEP	A375_MHC_IP_R1	1	518.6580810546875	2	518.257336	1034.50012	-0.52458	-0.00027187	1.0599	0.0005493	0.53533	0.00027744	518.2580145984251	74.713	0.5588	74.713	74.4	74.958	0					17	10	2	0	0	0	0.50702	1	27215	27215		19.257	4.4187	1	1550900			22153	6128	16033	16150	21745	21745					-0.015750139660895
INDDDDEDEG	10	Unmodified	_INDDDDEDEG_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H;SUPT6H|p.M124Nfs*4|1|0.47|ENSG00000109111|chr17:28674987-28674988|-/A|frameshift_variant	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MSMS	A375_MHC_IP_R2	2	568.68505859375	2	568.696737	1135.37892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.279	1	90.01	89.51	90.51	0.7318								0	0	0	0.15451	1	33978	33978		6.2058	0	1				22154	2857	16034	16151	21746	21746					-0.1833531138474882
INDDHHHSI	9	Unmodified	_INDDHHHSI_					0	0	0			REV__nc|ENSG00000159917|Q14590-2|ZNF235	REV__nc|ENSG00000159917|Q14590-2|ZNF235	MULTI-MSMS	A375_MHC_IP_R1	1	544.8292236328125	2	544.249412	1086.48427	-0.58597	-0.00031891	0.62133	0.00033816	0.035364	1.9247E-05	544.2496812284934	89.609	0.96234	89.609	89.12	90.083	0					45	18	4	0	0	0	0.25276	1	32873	32873		34.102	34.102	1	6654500	+		22155	20140	16035	16152	21747	21747					-0.055512608871367775
INDDHHHSI	9	Unmodified	_INDDHHHSI_					0	0	0			REV__nc|ENSG00000159917|Q14590-2|ZNF235	REV__nc|ENSG00000159917|Q14590-2|ZNF235	MULTI-MSMS	A375_MHC_IP_R2	2	544.5311889648438	2	544.249412	1086.48427	-0.73516	-0.00040011	0.43915	0.00023901	-0.29601	-0.0001611	544.2495685734467	88.931	0.90641	89.662	89.381	90.287	0.7318					40	17	4	0	0	0	0.25276	1	33912	33912		34.102	1.9855	1	7037300	+		22156	20140	16035	16152	21748	21748					-0.055512608871367775
INDDHHHSI	9	Unmodified	_INDDHHHSI_					0	0	0			REV__nc|ENSG00000159917|Q14590-2|ZNF235	REV__nc|ENSG00000159917|Q14590-2|ZNF235	MULTI-SECPEP	A375_MHC_IP_R2	2	544.6487426757812	2	544.249412	1086.48427	-0.73516	-0.00040011	0.43915	0.00023901	-0.29601	-0.0001611	544.2495685734467	88.931	0.90641	89.662	89.381	90.287	0.7318					40	17	4	0	0	0	0.3607	1	33831	33831		34.102	7.2188	1	7037300	+		22157	20140	16035	16152	21749	21749					-0.055512608871367775
INDEDDEDDT	10	Unmodified	_INDEDDEDDT_					0	0	0			REV__SPOCK3|p.D404N|2|0.31|ENSG00000196104|chr4:166735022-166735022|C/T|missense_variant	REV__SPOCK3|p.D404N|2|0.31|ENSG00000196104|chr4:166735022-166735022|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	590.684814453125	2	590.709844	1179.40514	-0.9407	-0.00055568	-1.8677	-0.0011033	-2.8084	-0.001659	590.7090174297989	38.386	0.40456	39.16	38.946	39.351	0.77451					10	7	2	0	0	0	0.69306	1	14105	14105		13.906	5.1606	1	1390200	+		22158	28036	16036	16153	21750	21750					-0.17739042213270295
INDFNLIVP	9	Unmodified	_INDFNLIVP_					0	0	0		ENSG00000177692|ENST00000381947|DNAJC28	ENSG00000177692|ENST00000381947|DNAJC28	ENSG00000177692|ENST00000381947|DNAJC28	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1890869140625	2	522.78985	1043.56515	-0.61247	-0.00032019	-1.2503	-0.00065363	-1.8627	-0.00097382	522.7893677103625	95.169	0.51052	95.169	94.853	95.364	0					14	9	2	0	0	0	0.78348	1	35031	35031		4.3292	4.3292	1	1283900			22159	8104	16037	16154	21751	21751					0.045106271030590506
INDFNLIVP	9	Unmodified	_INDFNLIVP_					0	0	0		ENSG00000177692|ENST00000381947|DNAJC28	ENSG00000177692|ENST00000381947|DNAJC28	ENSG00000177692|ENST00000381947|DNAJC28	MULTI-MATCH	A375_MHC_IP_R2	2		2	522.78985	1043.56515	-0.36925	-0.00019304	-1.1123	-0.00058149	-1.4815	-0.00077453	522.7891799048565	94.214	0.40462	94.959	94.717	95.122	0.74474	-0.10522	7.412E-05	NaN	4.3292	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1099700			22160	8104	16037	16154							0.045106271030590506
INDKSWKEQWK	11	Unmodified	_INDKSWKEQWK_					0	0	0			REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	731.7763061523438	2	731.377883	1460.74121	-0.52805	-0.00038621	-0.39581	-0.00028949	-0.92387	-0.0006757	731.3775750224538	96.339	1.1688	96.339	95.867	97.036	0					58	22	5	0	0	0	0.57887	2	35342	35342;35564		31.268	15.119	1	34003000	+		22161	28733	16038	16155	21752;21753	21752					0.0292721654629986
INDKSWKEQWK	11	Unmodified	_INDKSWKEQWK_					0	0	0			REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	731.4114379882812	2	731.377883	1460.74121	-0.67806	-0.00049592	-0.49877	-0.00036479	-1.1768	-0.00086071	731.3774721888938	95.625	0.96715	96.376	96.041	97.008	0.75045					57	18	5	0	0	0	0.57887	3	36324	36280;36324;36373		31.268	14.155	1	36490000	+		22162	28733	16038	16155	21754;21755;21756	21755					0.0292721654629986
INDKSWKEQWK	11	Unmodified	_INDKSWKEQWK_					0	0	0			REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	731.4114379882812	2	731.377883	1460.74121	-0.67806	-0.00049592	-0.49877	-0.00036479	-1.1768	-0.00086071	731.3774721888938	95.625	0.96715	96.376	96.041	97.008	0.75045					57	18	5	0	0	0	0.92067	1	36324	36324		31.268	11.906	1	36490000	+		22163	28733	16038	16155	21757	21757					0.0292721654629986
INDKSWKEQWK	11	Unmodified	_INDKSWKEQWK_					0	0	0			REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	731.377883	1460.74121	-0.52805	-0.00038621	-0.39581	-0.00028949	-0.92387	-0.0006757	731.3775750224538	96.339	1.1688	96.339	95.867	97.036	0	-0.018508	5.5639E-05	NaN	31.268	58	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34003000	+		22164	28733	16038	16155							0.0292721654629986
INDKVEKIY	9	Unmodified	_INDKVEKIY_					0	0	0			REV__tr|U7SSI6|U7SSI6_FUSNUtRNA-dihydrouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01281PE=3SV=1	REV__tr|U7SSI6|U7SSI6_FUSNUtRNA-dihydrouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01281PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	561.1851196289062	2	561.313689	1120.61282	-0.35841	-0.00020118	-0.2512	-0.000141	-0.60961	-0.00034218	561.3136508249249	54.52	0.60724	54.52	54.113	54.72	0					17	11	2	0	0	0	0.60101	1	19539	19539		14.838	0.25658	1	2117200	+		22165	28432	16039	16156	21758	21758					0.05734281303261923
INDQIQNAAF	10	Unmodified	_INDQIQNAAF_					0	0	0		ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF;nc|ENSG00000105287|Q9BZL6-2|PRKD2;ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2;ENSG00000115825|ENST00000234179|PRKD3	ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENSG00000115825|ENST00000234179|PRKD3	ENST00000597589.5_1_19:47177782-47200527:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	567.7066650390625	2	567.28292	1132.55129	-0.058643	-3.3267E-05	0.25283	0.00014342	0.19418	0.00011016	567.2826024829149	38.787	0.45665	38.787	38.526	38.983	0					13	8	3	0	0	0	0.79457	1	13196	13196		15.248	0	1	1697900			22166	2585;3342	16040	16157	21759	21759					-0.009686503960438131
INDTCIMQKVS	11	Unmodified	_INDTCIMQKVS_					0	0	0		ENST00000487943.5_1_3:159976413-159986247:-|nuORF	ENST00000487943.5_1_3:159976413-159986247:-|nuORF	ENST00000487943.5_1_3:159976413-159986247:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	626.7070922851562	2	626.307223	1250.59989	-0.70892	-0.000444	0.045221	2.8322E-05	-0.6637	-0.00041568	626.30721515696	65.78	0.50713	65.78	65.565	66.072	0					19	9	3	0	0	0	0.63737	1	23849	23849		20.415	2.2682	1	2027100			22167	12607	16041	16158	21760	21760					-0.015382411428163323
INDTCIMQKVS	11	Unmodified	_INDTCIMQKVS_					0	0	0		ENST00000487943.5_1_3:159976413-159986247:-|nuORF	ENST00000487943.5_1_3:159976413-159986247:-|nuORF	ENST00000487943.5_1_3:159976413-159986247:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	626.307223	1250.59989	-0.70892	-0.000444	0.045221	2.8322E-05	-0.6637	-0.00041568	626.30721515696	65.78	0.50713	65.78	65.565	66.072	0	0.019286	0.00031401	NaN	20.415	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2027100			22168	12607	16041	16158							-0.015382411428163323
INDTSVTVIW	10	Unmodified	_INDTSVTVIW_					0	0	0		nc|ENSG00000141665|Q8NCQ5-2|FBXO15;ENSG00000141665|ENST00000419743|FBXO15	nc|ENSG00000141665|Q8NCQ5-2|FBXO15	nc|ENSG00000141665|Q8NCQ5-2|FBXO15	MULTI-MSMS	A375_MHC_IP_R1	1	574.7703857421875	2	574.303321	1146.59209	-0.30174	-0.00017329	-1.8852	-0.0010827	-2.1869	-0.001256	574.3028367617305	87.244	0.60967	87.244	86.881	87.491	0					26	11	3	0	0	0	0.11068	1	31969	31969		61.357	7.5247	1	2901500			22169	5267	16042	16159	21761	21761					0.024656909235773128
INDTSVTVIW	10	Unmodified	_INDTSVTVIW_					0	0	0		nc|ENSG00000141665|Q8NCQ5-2|FBXO15;ENSG00000141665|ENST00000419743|FBXO15	nc|ENSG00000141665|Q8NCQ5-2|FBXO15	nc|ENSG00000141665|Q8NCQ5-2|FBXO15	MULTI-MATCH	A375_MHC_IP_R2	2		2	574.303321	1146.59209	-0.075129	-4.3147E-05	-2.039	-0.001171	-2.1141	-0.0012141	574.3020068235097	86.486	0.81636	87.219	86.743	87.56	0.73301	-0.012671	-0.00011104	NaN	61.357	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2976000			22170	5267	16042	16159							0.024656909235773128
INEDHLRLFRD	11	Unmodified	_INEDHLRLFRD_					0	0	0			REV__RPGRIP1L|p.I1149Ffs*6|1|0.8|ENSG00000103494|chr16:53619196-53619196|T/-|frameshift_variant	REV__RPGRIP1L|p.I1149Ffs*6|1|0.8|ENSG00000103494|chr16:53619196-53619196|T/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	476.5987854003906	3	476.584513	1426.73171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.363	1	83.363	82.863	83.863	0								0	0	0	0.16285	1	30504	30504		1.7824	0	1		+		22171	17280	16043	16160	21762	21762					0.03541448260762081
INEEINNVD	9	Unmodified	_INEEINNVD_					0	0	0		GRID2|p.D267N|2|0.35|ENSG00000152208|chr4:93216747-93216747|G/A|missense_variant	GRID2|p.D267N|2|0.35|ENSG00000152208|chr4:93216747-93216747|G/A|missense_variant	GRID2|p.D267N|2|0.35|ENSG00000152208|chr4:93216747-93216747|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	530.2080078125	2	530.251286	1058.48802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.78	1	102.54	102.04	103.04	0.76428								0	0	0	0.13472	1	38577	38577		31.268	7.2478	1				22172	14081	16044	16161	21763	21763					-0.03888635903922477
INEIDVHEC	9	Unmodified	_INEIDVHEC_					0	0	0			REV__ENSG00000180346|ENST00000603357|TIGD2	REV__ENSG00000180346|ENST00000603357|TIGD2	MULTI-MSMS	A375_MHC_IP_R2	2	536.711181640625	2	536.242406	1070.47026	-1.153	-0.00061828	0.18283	9.8043E-05	-0.97016	-0.00052024	536.2425098098224	23.451	0.86301	24.082	23.777	24.64	0.63015					25	16	2	0	0	0	0.61998	1	7497	7497		13.906	3.0821	1	2852400	+		22173	21607	16045	16162	21764	21764					-0.062156744304502354
INEIDVHEC	9	Unmodified	_INEIDVHEC_					0	0	0			REV__ENSG00000180346|ENST00000603357|TIGD2	REV__ENSG00000180346|ENST00000603357|TIGD2	MULTI-SECPEP	A375_MHC_IP_R2	2	535.6483154296875	2	536.242406	1070.47026	-1.153	-0.00061828	0.18283	9.8043E-05	-0.97016	-0.00052024	536.2425098098224	23.451	0.86301	24.082	23.777	24.64	0.63015					25	16	2	0	0	0	0.76827	1	7771	7771		6.7232	0.51738	1	2852400	+		22174	21607	16045	16162	21765	21765					-0.062156744304502354
INEKIMEAL	9	Unmodified	_INEKIMEAL_					0	0	0			REV__tr|U7T1R0|U7T1R0_FUSNUUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murDPE=3SV=1	REV__tr|U7T1R0|U7T1R0_FUSNUUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murDPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	531.4618530273438	2	530.788992	1059.56343	-0.45492	-0.00024147	0.24324	0.00012911	-0.21167	-0.00011235	530.7890800411252	85.541	0.50897	86.277	86.034	86.543	0.73601					15	9	2	0	0	0	0.61452	1	32573	32573		20.415	2.2682	1	1487200	+		22175	28704	16046	16163	21766	21766					0.03603250022774773
INEKLFTF	8	Unmodified	_INEKLFTF_					0	0	0			REV__ENST00000354828.7_1_21:27143132-27143276:+|nuORF	REV__ENST00000354828.7_1_21:27143132-27143276:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	506.67889404296875	2	506.279118	1010.54368	-0.58702	-0.0002972	0.16439	8.323E-05	-0.42263	-0.00021397	506.2791021365734	86.496	0.81738	87.229	86.845	87.662	0.733					34	15	3	0	0	0	0.69122	1	32878	32878		39.957	3.8303	1	7242800	+		22176	23814	16047	16164	21767	21767					0.038832420743460716
INFESKQNDK	10	Unmodified	_INFESKQNDK_					0	0	0			REV__nc|ENSG00000138115|P10632-2|CYP2C8	REV__nc|ENSG00000138115|P10632-2|CYP2C8	MULTI-SECPEP	A375_MHC_IP_R1	1	408.9549255371094	3	408.206932	1221.59897	0.075385	3.0773E-05	-0.028311	-1.1557E-05	0.047074	1.9216E-05	408.2067677467888	42.91	0.56079	42.91	42.739	43.3	0					16	10	2	0	0	0	0.92603	1	15019	15019		8.9762	0	1	1328400	+		22177	19066	16048	16165	21768	21768					-0.002969961958569911
INFKIERGQLL	11	Unmodified	_INFKIERGQLL_					0	0	0		ENSG00000001626|ENST00000003084|CFTR;nc|ENSG00000001626|P13569-3|CFTR	ENSG00000001626|ENST00000003084|CFTR	ENSG00000001626|ENST00000003084|CFTR	MULTI-MSMS	A375_MHC_IP_R1	1	444.6661071777344	3	444.266233	1329.77687	-0.00033588	-1.4922E-07	0.026207	1.1643E-05	0.025871	1.1494E-05	444.2661846075146	52.074	0.45741	52.074	51.879	52.336	0					17	8	3	0	0	0	0.73439	1	18534	18534		4.7159	1.3602	1	2083800			22178	848	16049	16166	21769	21769					0.12517298794000453
INFKIERGQLL	11	Unmodified	_INFKIERGQLL_					0	0	0		ENSG00000001626|ENST00000003084|CFTR;nc|ENSG00000001626|P13569-3|CFTR	ENSG00000001626|ENST00000003084|CFTR	ENSG00000001626|ENST00000003084|CFTR	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	444.266233	1329.77687	-0.51842	-0.00023032	0.29695	0.00013193	-0.22146	-9.8389E-05	444.60050829656353	51.195	0.40591	51.947	51.763	52.169	0.75225	-0.063459	0.00028761	NaN	4.7159	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2553500			22179	848	16049	16166							0.12517298794000453
INFKSPII	8	Unmodified	_INFKSPII_					0	0	0			REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	MULTI-SECPEP	A375_MHC_IP_R1	1	466.6839599609375	2	466.284203	930.553853	-0.24073	-0.00011225	-0.040631	-1.8946E-05	-0.28136	-0.0001312	466.28412844704445	100.09	0.45605	100.09	99.925	100.38	0					16	8	2	0	0	0	0.69059	1	36797	36797		38.151	3.9638	1	2273800	+		22180	16526	16050	16167	21770	21770					0.08579849799582462
INFRRGEKV	9	Unmodified	_INFRRGEKV_					0	0	0			REV__ENSG00000203668|ENST00000366553|CHML	REV__ENSG00000203668|ENST00000366553|CHML	MULTI-SECPEP	A375_MHC_IP_R2	2	560.2117919921875	2	559.825089	1117.63563	-0.85582	-0.00047911	-1.1821	-0.00066176	-2.0379	-0.0011409	559.8243508161559	34.637	0.25286	35.401	35.223	35.475	0.76338					6	4	2	0	0	0	0.75842	1	12502	12502		13.042	2.2185	1	1125300	+		22181	22464	16051	16168	21771	21771					0.08151345211376793
INGWKQIQY	9	Unmodified	_INGWKQIQY_					0	0	0			REV__ENSG00000171953|ENST00000474627|ATPAF2	REV__ENSG00000171953|ENST00000474627|ATPAF2	MULTI-MSMS	A375_MHC_IP_R2	2	575.7039184570312	2	575.306198	1148.59784	-0.73978	-0.0004256	-2.6478	-0.0015233	-3.3876	-0.0019489	575.3042634825447	33.772	0.50628	34.525	34.196	34.702	0.75225					15	9	2	0	0	0	0.17328	1	12141	12141		39.957	2.8827	1	2765600	+		22182	21112	16052	16169	21772	21772					0.029488342258900957
INGWKQIQY	9	Unmodified	_INGWKQIQY_					0	0	0			REV__ENSG00000171953|ENST00000474627|ATPAF2	REV__ENSG00000171953|ENST00000474627|ATPAF2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	575.306198	1148.59784	-0.73978	-0.0004256	-2.6478	-0.0015233	-3.3876	-0.0019489	575.3042634825447	33.772	0.50628	34.525	34.196	34.702	0.75225	0.046893	0.00085657	NaN	39.957	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2765600	+		22183	21112	16052	16169							0.029488342258900957
INHKYEQP	8	Unmodified	_INHKYEQP_					0	0	0			REV__nc|ENSG00000177119|Q4KMQ2-3|ANO6	REV__nc|ENSG00000177119|Q4KMQ2-3|ANO6	MULTI-MSMS	A375_MHC_IP_R1	1	514.7162475585938	2	514.761623	1027.50869	-0.5586	-0.00028754	-0.4845	-0.0002494	-1.0431	-0.00053695	514.7612133628098	40.857	0.45375	40.857	40.609	41.063	0					11	8	2	0	0	0	0.77624	1	14009	14009		8.5933	1.304	1	1313200	+		22184	21440	16053	16170	21773	21773					-0.003960007336218041
INIFKLNV	8	Unmodified	_INIFKLNV_					0	0	0		ENST00000254810.8_2_17:73774064-73774193:-|nuORF	ENST00000254810.8_2_17:73774064-73774193:-|nuORF	ENST00000254810.8_2_17:73774064-73774193:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	481.69549560546875	2	480.797478	959.580402	-0.42351	-0.00020362	-0.48767	-0.00023447	-0.91117	-0.00043809	480.7974719049917	93.965	1.6771	93.965	93.533	95.211	0					77	32	4	0	0	0	0.45507	1	34468	34468		50.855	6.448	1	36139000			22185	10228	16054	16171	21774	21774					0.09899538690888221
INILNGNTW	9	Unmodified	_INILNGNTW_					0	0	0			REV__nc|ENSG00000168615|Q13443-2|ADAM9	REV__nc|ENSG00000168615|Q13443-2|ADAM9	MULTI-SECPEP	A375_MHC_IP_R2	2	523.176513671875	2	522.777274	1043.53999	-0.49293	-0.00025769	-1.4893	-0.00077856	-1.9822	-0.0010362	522.7774024640128	69.882	1.5724	70.616	69.271	70.844	0.73421					40	30	2	0	0	0	0.49205	1	26458	26458		27.629	0	1	5837000	+		22186	20872	16055	16172	21775	21775					0.019965723004588654
INIPKIRKL	9	Unmodified	_INIPKIRKL_					0	0	0			REV__tr|U7SIQ6|U7SIQ6_FUSNUtRNAuridine5-carboxymethylaminomethylmodificationenzymeMnmGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmGPE=3SV=1	REV__tr|U7SIQ6|U7SIQ6_FUSNUtRNAuridine5-carboxymethylaminomethylmodificationenzymeMnmGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmGPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	365.61322021484375	3	365.585126	1093.73355	-0.008405	-3.0727E-06	0.3315	0.00012119	0.3231	0.00011812	365.58529328747125	39.781	0.60735	39.781	39.391	39.999	0					24	11	3	0	0	0	0.65748	1	13628	13628		10.8	0.64894	1	1917200	+		22187	28212	16056	16173	21776	21776					0.19043153807365343
INISNAALNLY	11	Unmodified	_INISNAALNLY_					0	0	0			REV__ENSG00000134061|ENST00000256447|CD180	REV__ENSG00000134061|ENST00000256447|CD180	MULTI-SECPEP	A375_MHC_IP_R1	1	403.2994689941406	3	402.555672	1204.64519	-0.23444	-9.4377E-05	-1.4637	-0.00058923	-1.6982	-0.0006836	402.5548907387013	20.572	0.81513	20.572	20.283	21.098	0					24	15	2	0	0	0	0.99411	1	5443	5443		6.6235	1.2207	1	1068800	+		22188	18749	16057	16174	21777	21777					0.05105068706234306
INITILKGQ	9	Unmodified	_INITILKGQ_					0	0	0		ENST00000470655.5_1_22:37578844-37581961:-|nuORF	ENST00000470655.5_1_22:37578844-37581961:-|nuORF	ENST00000470655.5_1_22:37578844-37581961:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1000.064697265625	1	999.619707	998.612431	0.54046	0.00054026	0.13455	0.0001345	0.67501	0.00067476	999.6194083887981	112.51	0.51164	112.51	112.28	112.79	0					14	9	2	0	0	0	0.65246	1	41230	41230		21.747	0	1	5414700			22189	12339	16058	16175	21778	21778					0.1130690637405678
INIYHLKY	8	Unmodified	_INIYHLKY_					0	0	0			REV__SCNN1G|p.M235I|1|0.09|ENSG00000166828|chr16:23192438-23192438|G/A|missense_variant	REV__SCNN1G|p.M235I|1|0.09|ENSG00000166828|chr16:23192438-23192438|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	355.2608642578125	3	355.202682	1062.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.933	1	26.593	26.093	27.093	0.65992								0	0	0	0.16876	1	8717	8717		13.906	3.0821	1		+		22190	27927	16059	16176	21779	21779					0.05742637202547485
INKCAMCQ	8	Unmodified	_INKCAMCQ_					0	0	0		ENSG00000133710|ENST00000256084|SPINK5;nc|ENSG00000133710|Q9NQ38-3|SPINK5;nc|ENSG00000133710|Q9NQ38-2|SPINK5	ENSG00000133710|ENST00000256084|SPINK5	ENSG00000133710|ENST00000256084|SPINK5	MSMS	A375_MHC_IP_R2	2	455.67926025390625	2	455.700808	909.387064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.199	1	27.878	27.378	28.378	0.67857								0	0	0	0.16876	1	9264	9264		9.3474	0	1				22191	4526	16060	16177	21780	21780					-0.07125405683655117
INKETIENV	9	Unmodified	_INKETIENV_					0	0	0		tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	529.9631958007812	2	530.287671	1058.56079	-0.37288	-0.00019773	0.049005	2.5987E-05	-0.32387	-0.00017175	530.2877455775952	43.17	1.018	43.17	42.841	43.859	0					75	19	5	0	0	0	0.025235	1	15029	15029		107.19	14.696	1	98559000			22192	29793	16061	16178	21781	21781					0.03385117889456524
INKETIENV	9	Unmodified	_INKETIENV_					0	0	0		tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	530.1607666015625	2	530.287671	1058.56079	-0.54721	-0.00029018	-0.40207	-0.00021321	-0.94928	-0.00050339	530.2874632524356	42.369	1.1174	43.141	42.809	43.926	0.7724					67	21	5	0	0	0	0.03109	1	15752	15752		103.35	3.5982	1	109930000			22193	29793	16061	16178	21782	21782					0.03385117889456524
INKFINKD	8	Unmodified	_INKFINKD_					0	0	0		ENSG00000128714|ENST00000392539|HOXD13	ENSG00000128714|ENST00000392539|HOXD13	ENSG00000128714|ENST00000392539|HOXD13	MULTI-SECPEP	A375_MHC_IP_R2	2	496.18988037109375	2	496.282192	990.549831	-0.40328	-0.00020014	-0.94367	-0.00046833	-1.3469	-0.00066847	496.28184747235457	42.42	0.40731	43.193	42.962	43.369	0.7724					13	7	2	0	0	0	0.8957	1	15789	15789		21.747	2.3076	1	1575300			22194	4161	16062	16179	21783	21783					0.054177603058633395
INKFVPRTF	9	Unmodified	_INKFVPRTF_					0	0	0		tr|U7SUD2|U7SUD2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01190PE=3SV=1	tr|U7SUD2|U7SUD2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01190PE=3SV=1	tr|U7SUD2|U7SUD2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01190PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	561.8221435546875	2	561.326934	1120.63931	-0.62392	-0.00035023	-1.1004	-0.0006177	-1.7243	-0.00096792	561.3265741303952	82.57	0.60732	83.313	82.94	83.547	0.74293					17	11	2	0	0	0	0.6898	1	31260	31260		7.9102	0.62092	1	2292500			22195	29760	16063	16180	21784	21784					0.08382014985227215
INKFVPRTF	9	Unmodified	_INKFVPRTF_					0	0	0		tr|U7SUD2|U7SUD2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01190PE=3SV=1	tr|U7SUD2|U7SUD2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01190PE=3SV=1	tr|U7SUD2|U7SUD2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01190PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	561.326934	1120.63931	-0.62392	-0.00035023	-1.1004	-0.0006177	-1.7243	-0.00096792	561.3265741303952	82.57	0.60732	83.313	82.94	83.547	0.74293	-0.078461	-0.00040693	NaN	7.9102	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2292500			22196	29760	16063	16180							0.08382014985227215
INKIFVQNL	9	Unmodified	_INKIFVQNL_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;nc|ENSG00000197653|Q8IVF4-2|DNAH10;ENST00000467219.5_1_12:124265674-124298205:+|nuORF	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-SECPEP	A375_MHC_IP_R1	1	544.1923217773438	2	544.826766	1087.63898	-0.88182	-0.00048044	0.15484	8.4361E-05	-0.72698	-0.00039608	544.8268616835073	30.55	0.25047	30.55	30.453	30.703	0					6	4	2	0	0	0	0.76187	1	9769	9769		3.9444	0	1	575630			22197	9182	16064	16181	21785	21785					0.09866595265361866
INKIYRGV	8	Unmodified	_INKIYRGV_					0	0	0			REV__ENST00000493328.5_1_1:35452707-35454621:-|nuORF	REV__ENST00000493328.5_1_1:35452707-35454621:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	481.1903991699219	2	481.792727	961.5709	-0.38189	-0.00018399	2.3343	0.0011246	1.9524	0.00094065	481.7936035511297	143.74	0.15468	143.77	143.64	143.79	0.024414					4	2	2	0	0	0	0.972	1	56169	56169		2.5775	0.27475	1	538150	+		22198	25422	16065	16182	21786	21786					0.0885777040538187
INKKNITNL	9	Unmodified	_INKKNITNL_					0	0	0		APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1	APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant	APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	529.7213745117188	2	529.321848	1056.62914	-0.72263	-0.00038251	-0.086939	-4.6019E-05	-0.80957	-0.00042853	529.3217276550911	28.102	0.40163	28.102	27.887	28.288	0					11	7	2	0	0	0	0.72623	1	8666	8666		9.3831	0	1	2244800			22199	156	16066	16183	21787	21787					0.10309407259978798
INKKNITNL	9	Unmodified	_INKKNITNL_					0	0	0		APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1	APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant	APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	529.321848	1056.62914	-0.4796	-0.00025386	-0.53814	-0.00028485	-1.0177	-0.00053871	529.3214745158192	27.394	0.30525	28.073	27.895	28.2	0.67857	-0.014678	-0.00025124	NaN	9.3831	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2506400			22200	156	16066	16183							0.10309407259978798
INKQRLYKM	9	Unmodified	_INKQRLYKM_					0	0	0			REV__GLYATL1|p.R250Q|1|0.33|ENSG00000166840|chr11:58955867-58955867|G/A|missense_variant	REV__GLYATL1|p.R250Q|1|0.33|ENSG00000166840|chr11:58955867-58955867|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	398.2923278808594	3	398.565626	1192.67505	-0.38204	-0.00015227	-1.6109	-0.00064204	-1.9929	-0.00079431	398.5649688982841	24.391	0.25358	25.035	24.857	25.11	0.64368					8	4	3	0	0	0	0.71541	1	8035	8035		4.5289	0	1	5003100	+		22201	20707	16067	16184	21788	21788					0.08641729170585677
INKSETRLGFL	11	Unmodified	_INKSETRLGFL_					0	0	0		SI|p.S1771F|1|0.27|ENSG00000090402|chr3:164982346-164982346|G/A|missense_variant	SI|p.S1771F|1|0.27|ENSG00000090402|chr3:164982346-164982346|G/A|missense_variant	SI|p.S1771F|1|0.27|ENSG00000090402|chr3:164982346-164982346|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	427.31231689453125	3	426.578588	1276.71394	-0.2404	-0.00010255	0.097083	4.1414E-05	-0.14332	-6.1136E-05	426.5785474792349	36.958	0.70744	36.958	36.695	37.402	0					35	13	4	0	0	0	0.72713	1	12387	12387		11.631	0.73241	1	17291000			22202	29158	16068	16185	21789	21789					0.08664733005957714
INKSETRLGFL	11	Unmodified	_INKSETRLGFL_					0	0	0		SI|p.S1771F|1|0.27|ENSG00000090402|chr3:164982346-164982346|G/A|missense_variant	SI|p.S1771F|1|0.27|ENSG00000090402|chr3:164982346-164982346|G/A|missense_variant	SI|p.S1771F|1|0.27|ENSG00000090402|chr3:164982346-164982346|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	426.578588	1276.71394	-0.2404	-0.00010255	0.097083	4.1414E-05	-0.14332	-6.1136E-05	426.5785474792349	36.958	0.70744	36.958	36.695	37.402	0	0.070475	0.00025521	NaN	11.631	35	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17291000			22203	29158	16068	16185							0.08664733005957714
INKWTVQY	8	Unmodified	_INKWTVQY_					0	0	0		ENSG00000169410|ENST00000618819|PTPN9	ENSG00000169410|ENST00000618819|PTPN9	ENSG00000169410|ENST00000618819|PTPN9	MULTI-MSMS	A375_MHC_IP_R2	2	526.7098999023438	2	526.282192	1050.54983	-0.46873	-0.00024669	-1.2607	-0.00066351	-1.7295	-0.00091019	526.2811712502264	77.476	1.6288	78.219	77.504	79.132	0.74294					65	31	4	0	0	0	0.75805	1	29606	29606		18.135	2.2878	1	18632000			22204	7405	16069	16186	21790	21790					0.026577603058512977
INLSKINNI	9	Unmodified	_INLSKINNI_					0	0	0			REV__tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1	REV__tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	515.2081298828125	2	514.808574	1027.60259	-1.095	-0.0005637	0.53947	0.00027773	-0.5555	-0.00028598	514.808723190483	21.067	0.30314	21.686	21.525	21.828	0.61932					9	5	2	0	0	0	0.11629	1	6621	6621		47.749	0.1543	1	1521900	+		22205	28350	16070	16187	21791	21791					0.0898971836866167
INLSMMNFF	9	Unmodified	_INLSMMNFF_					0	0	0		ENST00000512914.1_1_4:6643196-6643628:+|nuORF	ENST00000512914.1_1_4:6643196-6643628:+|nuORF	ENST00000512914.1_1_4:6643196-6643628:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	559.1642456054688	2	558.764463	1115.51437	-0.71492	-0.00039947	0.42268	0.00023618	-0.29224	-0.00016329	558.7647147628873	84.914	0.45995	84.914	84.647	85.107	0					15	8	2	0	0	0	0.65246	1	31092	31092		15.847	3.3156	1	2136300			22206	12923	16071	16188	21792	21792					-0.03876361537822959
INLSRFTSF	9	Unmodified	_INLSRFTSF_					0	0	0			REV__ENSG00000174776|ENST00000682715|WDR49	REV__ENSG00000174776|ENST00000682715|WDR49	MULTI-SECPEP	A375_MHC_IP_R1	1	543.192626953125	2	542.792924	1083.57129	-0.095115	-5.1628E-05	-0.35164	-0.00019087	-0.44675	-0.00024249	542.7925888352196	114.3	0.66325	114.3	113.95	114.62	0					18	12	2	0	0	0	0.74597	1	41914	41914		22.736	8.8302	1	5439800	+		22207	21297	16072	16189	21793	21793					0.032851453345756454
INLSRFTSF	9	Unmodified	_INLSRFTSF_					0	0	0			REV__ENSG00000174776|ENST00000682715|WDR49	REV__ENSG00000174776|ENST00000682715|WDR49	MULTI-MSMS	A375_MHC_IP_R2	2	543.1927490234375	2	542.792924	1083.57129	-0.60897	-0.00033055	-0.26329	-0.00014291	-0.87226	-0.00047346	542.7928757724856	113.59	0.55735	114.3	114.02	114.58	0.70985					18	10	2	0	0	0	0.55471	1	42801	42801		17.113	1.8644	1	5879900	+		22208	21297	16072	16189	21794	21794					0.032851453345756454
INLSRFTSF	9	Unmodified	_INLSRFTSF_					0	0	0			REV__ENSG00000174776|ENST00000682715|WDR49	REV__ENSG00000174776|ENST00000682715|WDR49	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	542.792924	1083.57129	-0.60897	-0.00033055	-0.26329	-0.00014291	-0.87226	-0.00047346	542.7928757724856	113.59	0.55735	114.3	114.02	114.58	0.70985	-0.0025686	3.6937E-05	NaN	17.113	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5879900	+		22209	21297	16072	16189							0.032851453345756454
INLSSLWTVP	10	Unmodified	_INLSSLWTVP_					0	0	0		nc|ENSG00000143921|Q9H221-2|ABCG8;ENSG00000143921|ENST00000272286|ABCG8	nc|ENSG00000143921|Q9H221-2|ABCG8	nc|ENSG00000143921|Q9H221-2|ABCG8	MULTI-SECPEP	A375_MHC_IP_R2	2	376.9449462890625	3	377.213246	1128.61791	0.07037	2.6545E-05	1.7195	0.00064862	1.7899	0.00067516	377.2140120162648	55.803	1.1192	56.553	55.677	56.796	0.75015					36	21	4	0	0	0	0.88918	1	21034	21034		7.9454	0.33645	1	12129000			22210	5447	16073	16190	21795	21795					0.05874585165838653
INLVRISE	8	Unmodified	_INLVRISE_					0	0	0			REV__ENST00000506396.1_1_5:31249548-31249821:+|nuORF	REV__ENST00000506396.1_1_5:31249548-31249821:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	471.69219970703125	2	472.282192	942.549831	-0.46136	-0.00021789	0.68852	0.00032518	0.22716	0.00010728	472.2823317386408	58.134	0.35407	58.134	57.923	58.278	0					9	6	2	0	0	0	0.95423	1	20832	20832		18.135	1.1927	1	942900	+		22211	25551	16074	16191	21796	21796					0.07625760305847962
INLYLQREFEK	11	Unmodified	_INLYLQREFEK_					0	0	0		nc|ENSG00000079150|Q9Y680-3|FKBP7;ENSG00000079150|ENST00000424785|FKBP7	nc|ENSG00000079150|Q9Y680-3|FKBP7	nc|ENSG00000079150|Q9Y680-3|FKBP7	MULTI-SECPEP	A375_MHC_IP_R2	2	485.2102966308594	3	484.933031	1451.77726	-0.53633	-0.00026009	-0.7044	-0.00034159	-1.2407	-0.00060167	484.93261426484514	132.87	1.2744	133.04	132.33	133.6	0.16487					26	24	2	0	0	0	1.0002	1	52336	52336		1.3296	0	1	2908900			22212	1688	16075	16192	21797	21797					0.06944673723160122
INMCYFVDFK	10	Unmodified	_INMCYFVDFK_					0	0	0			REV__nc|ENSG00000110619|P49589-2|CARS1	REV__nc|ENSG00000110619|P49589-2|CARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	426.6893005371094	3	427.199844	1278.5777	-0.091451	-3.9068E-05	0.84511	0.00036103	0.75366	0.00032196	427.2001773780087	46.314	0.86349	47.08	46.603	47.466	0.76518					39	16	3	0	0	0	0.92957	1	17422	17422		3.3196	3.3196	1	3790000	+		22213	17633	16076	16193	21798	21798					-0.05044420820581763
INMDFNKAYV	10	Unmodified	_INMDFNKAYV_					0	0	0			REV__tr|U7T6Z8|U7T6Z8_FUSNUGMPsynthase[glutamine-hydrolyzing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=guaAPE=3SV=1	REV__tr|U7T6Z8|U7T6Z8_FUSNUGMPsynthase[glutamine-hydrolyzing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=guaAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	608.1982421875	2	607.797349	1213.58014	-0.38508	-0.00023405	0.53343	0.00032422	0.14835	9.017E-05	607.7989260936498	131.84	1.0675	132.03	131.75	132.82	0.18953					25	20	2	0	0	0	0.85074	1	51868	51868		27.629	1.3607	1	8916200	+		22214	28874	16077	16194	21799	21799					-0.018102490912724534
INNNKIAEV	9	Unmodified	_INNNKIAEV_					0	0	0			REV__tr|U7T205|U7T205_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00710PE=4SV=1	REV__tr|U7T205|U7T205_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00710PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	508.12164306640625	2	507.782556	1013.55056	-1.0071	-0.0005114	0.11691	5.9365E-05	-0.89021	-0.00045203	507.78264252005675	38.139	0.71647	38.914	38.534	39.25	0.77451					35	13	4	0	0	0	0.096726	1	14028	14028		61.357	0	1	15546000	+		22215	28713	16078	16195	21800	21800					0.044325549548943854
INNNKIQAL	9	Unmodified	_INNNKIQAL_					0	0	0			REV__ENSG00000138095|ENST00000260665|LRPPRC	REV__ENSG00000138095|ENST00000260665|LRPPRC	MULTI-MSMS	A375_MHC_IP_R2	2	514.6980590820312	2	514.298373	1026.58219	-0.80247	-0.00041271	-0.011674	-6.0038E-06	-0.81415	-0.00041871	514.2985084540537	129.27	0.70724	129.51	129.31	130.02	0.23946					23	13	2	0	0	0	0.64808	1	50821	50821		11.64	0.81637	1	7066800	+		22216	19063	16079	16196	21801	21801					0.06996547708831713
INNNKIQAL	9	Unmodified	_INNNKIQAL_					0	0	0			REV__ENSG00000138095|ENST00000260665|LRPPRC	REV__ENSG00000138095|ENST00000260665|LRPPRC	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	514.298373	1026.58219	-0.70484	-0.0003625	-0.092408	-4.7525E-05	-0.79724	-0.00041002	514.2986211402523	129.52	0.55745	129.52	129.4	129.95	0	0.0085432	-4.7315E-05	NaN	11.64	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6730800	+		22217	19063	16079	16196							0.06996547708831713
INNNKIQAL	9	Unmodified	_INNNKIQAL_					0	0	0			REV__ENSG00000138095|ENST00000260665|LRPPRC	REV__ENSG00000138095|ENST00000260665|LRPPRC	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	514.298373	1026.58219	-0.80247	-0.00041271	-0.011674	-6.0038E-06	-0.81415	-0.00041871	514.2985084540537	129.27	0.70724	129.51	129.31	130.02	0.23946	-0.0085432	3.5728E-05	NaN	11.64	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7066800	+		22218	19063	16079	16196							0.06996547708831713
INNTQTTTHL	10	Unmodified	_INNTQTTTHL_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-SECPEP	A375_MHC_IP_R2	2	571.6627807617188	2	571.793652	1141.57275	-0.31232	-0.00017858	-3.1891	-0.0018235	-3.5014	-0.0020021	571.7919856828702	31.077	0.40636	31.796	31.517	31.923	0.71857					11	7	2	0	0	0	0.79457	1	10950	10950		20.415	9.5906	1	1410000			22219	2697	16080	16197	21802	21802					0.0076273463266716135
INPDANNEL	9	Unmodified	_INPDANNEL_					0	0	0			REV__ANKRD34B|p.Q80P|1|0.4|ENSG00000189127|chr5:80559781-80559781|T/G|missense_variant	REV__ANKRD34B|p.Q80P|1|0.4|ENSG00000189127|chr5:80559781-80559781|T/G|missense_variant	MSMS	A375_MHC_IP_R1	1	500.20306396484375	2	500.240721	998.466889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.793	1	40.793	40.293	41.293	0								0	0	0	0.15283	1	14044	14044		16.942	0	1		+		22220	15409	16081	16198	21803	21803					-0.0324060121280354
INPVTLRRWL	10	Unmodified	_INPVTLRRWL_					0	0	0		ENSG00000160191|ENST00000291539|PDE9A;nc|ENSG00000160191|O76083-16|PDE9A;nc|ENSG00000160191|O76083-15|PDE9A;nc|ENSG00000160191|O76083-14|PDE9A;nc|ENSG00000160191|O76083-2|PDE9A;nc|ENSG00000160191|O76083-13|PDE9A;nc|ENSG00000160191|O76083-8|PDE9A;nc|ENSG00000160191|O76083-6|PDE9A;ENST00000470987.5_1_21:44117526-44195400:+|nuORF;nc|ENSG00000160191|O76083-3|PDE9A;nc|ENSG00000160191|O76083-4|PDE9A;nc|ENSG00000160191|O76083-11|PDE9A;nc|ENSG00000160191|O76083-9|PDE9A;nc|ENSG00000160191|O76083-12|PDE9A;nc|ENSG00000160191|O76083-5|PDE9A;ENST00000489319.5_1_21:44178904-44195400:+|nuORF;nc|ENSG00000160191|O76083-7|PDE9A;nc|ENSG00000160191|O76083-10|PDE9A	ENSG00000160191|ENST00000291539|PDE9A	ENSG00000160191|ENST00000291539|PDE9A	MSMS	A375_MHC_IP_R1	1	634.3862915039062	2	634.385314	1266.75608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.68	1	120.68	120.18	121.18	0								0	0	0	0.1552	1	44732	44732		3.9444	0.3479	1				22221	6402	16082	16199	21804	21804					0.13336753204998786
INQERFIVV	9	Unmodified	_INQERFIVV_					0	0	0		ENST00000498505.5_1_3:139068252-139075853:+|nuORF	ENST00000498505.5_1_3:139068252-139075853:+|nuORF	ENST00000498505.5_1_3:139068252-139075853:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	559.6468505859375	2	559.321848	1116.62914	-0.60942	-0.00034086	0.16894	9.4492E-05	-0.44048	-0.00024637	559.3219062247747	90.022	1.0129	90.022	89.628	90.641	0					38	19	3	0	0	0	0.36673	1	33081	33081		34.402	0	1	13816000			22222	12762	16083	16200	21805	21805					0.07549407259989493
INQKLGVSL	9	Unmodified	_INQKLGVSL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	A375_MHC_IP_R1	1	486.1871337890625	2	486.297842	970.581131	-0.26231	-0.00012756	0.78996	0.00038416	0.52765	0.00025659	486.2980094168708	60.671	0.35677	60.671	60.464	60.821	0					9	6	2	0	0	0	0.46045	1	21803	21803		29.082	10.935	1	829100			22223	3688	16084	16201	21806	21806					0.09466333339958055
INQLKIEGV	9	Unmodified	_INQLKIEGV_					0	0	0		ENST00000576348.1_1_16:14014055-14020614:+|nuORF;nc|ENSG00000175595|Q92889-2|ERCC4;ENSG00000175595|ENST00000311895|ERCC4	ENST00000576348.1_1_16:14014055-14020614:+|nuORF	ENST00000576348.1_1_16:14014055-14020614:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.7021789550781	2	507.303124	1012.5917	-0.38542	-0.00019552	-1.1831	-0.00060017	-1.5685	-0.00079569	507.3026667785898	81.481	0.65764	81.481	81.151	81.809	0					16	12	2	0	0	0	0.65527	1	29805	29805		17.113	7.039	1	1653400			22224	7971	16085	16202	21807	21807					0.0859031599438822
INQLSDPDY	9	Unmodified	_INQLSDPDY_					0	0	0		ENST00000482558.5_1_7:17908017-17937021:-|nuORF;ENSG00000071189|ENST00000428135|SNX13;nc|ENSG00000071189|Q9Y5W8|SNX13	ENST00000482558.5_1_7:17908017-17937021:-|nuORF	ENST00000482558.5_1_7:17908017-17937021:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	532.1832275390625	2	532.748379	1063.4822	-0.66354	-0.0003535	-2.4215	-0.00129	-3.085	-0.0016435	532.7452718909631	36.208	0.30517	36.208	35.982	36.287	0					8	5	2	0	0	0	0.55359	1	12063	12063		21.747	1.293	1	731560			22225	1510	16086	16203	21808	21808					-0.04699734415612511
INQNPNLDGFI	11	Unmodified	_INQNPNLDGFI_					0	0	0		tr|U7T3E2|U7T3E2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00397PE=4SV=1	tr|U7T3E2|U7T3E2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00397PE=4SV=1	tr|U7T3E2|U7T3E2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00397PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	415.9472961425781	3	415.547177	1243.6197	0.055071	2.2885E-05	-0.1027	-4.2678E-05	-0.047631	-1.9793E-05	415.5471790202946	32.61	0.60503	32.61	32.333	32.938	0					26	11	3	0	0	0	0.72728	1	10536	10536		6.2344	0.042509	1	5925500			22226	29969	16087	16204	21809	21809					0.007635941838316285
INQRKKFRRRW	11	Unmodified	_INQRKKFRRRW_					0	0	0		ENSG00000106484|ENST00000223215|MEST;nc|ENSG00000106484|Q5EB52-3|MEST;nc|ENSG00000106484|Q5EB52-2|MEST	ENSG00000106484|ENST00000223215|MEST	ENSG00000106484|ENST00000223215|MEST	MSMS	A375_MHC_IP_R2	2	794.5374755859375	2	794.476392	1586.93823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.74	1	103.5	103	104	0.76428								0	0	0	0.16354	1	38921	38921		0.30703	0.30703	1				22227	2695	16088	16205	21810	21810					0.16823905670412387
INQVPPRKL	9	Unmodified	_INQVPPRKL_					0	0	0			REV__ENST00000555404.5_2_14:58875849-58877568:-|nuORF	REV__ENST00000555404.5_2_14:58875849-58877568:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	533.2315063476562	2	532.832383	1063.65021	-0.76764	-0.00040903	0.26471	0.00014104	-0.50294	-0.00026798	532.8325451059158	36.92	0.5038	36.92	36.695	37.198	0					22	9	3	0	0	0	0.69381	1	12395	12395		15.847	5.7733	1	8500700	+		22228	26097	16089	16206	21811	21811					0.1209341735950602
INRFNGTDIHS	11	Unmodified	_INRFNGTDIHS_					0	0	0		ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.N3185Ifs*33|1|0.2|ENSG00000168702|chr2:140475211-140475211|A/-|frameshift_variant	ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	MULTI-MSMS	A375_MHC_IP_R2	2	637.7169189453125	2	637.317825	1272.6211	-0.87975	-0.00056068	-1.2867	-0.00082004	-2.1664	-0.0013807	637.3169564232593	40.535	0.40678	41.31	41.031	41.438	0.77451					12	7	2	0	0	0	0.72651	1	15044	15044		15.248	0.8431	1	2956000			22229	7335	16090	16207	21812	21812					-0.004307717274286915
INSDFAFDF	9	Unmodified	_INSDFAFDF_					0	0	0		nc|ENSG00000168671|Q3SY77-2|UGT3A2;ENSG00000168671|ENST00000282507|UGT3A2	nc|ENSG00000168671|Q3SY77-2|UGT3A2	nc|ENSG00000168671|Q3SY77-2|UGT3A2	MULTI-SECPEP	A375_MHC_IP_R1	1	538.640380859375	2	538.24019	1074.46583	-0.62969	-0.00033892	0.6257	0.00033678	-0.0039866	-2.1458E-06	538.2405126414278	77.758	0.6628	77.758	77.436	78.099	0					25	12	3	0	0	0	0.65246	1	28341	28341		15.847	15.847	1	4510000			22230	7332	16091	16208	21813	21813					-0.06842815581717332
INSHTPYLI	9	Unmodified	_INSHTPYLI_					0	0	0			REV__nc|ENSG00000242110|Q9UHK6-5|AMACR	REV__nc|ENSG00000242110|Q9UHK6-5|AMACR	MULTI-SECPEP	A375_MHC_IP_R2	2	529.1350708007812	2	529.287474	1056.5604	-0.49304	-0.00026096	0.087203	4.6156E-05	-0.40583	-0.0002148	529.2875580527507	83.912	0.51387	84.652	84.508	85.022	0.73962					12	9	2	0	0	0	0.67539	1	31913	31913		16.149	0.90062	1	1491300	+		22231	27523	16092	16209	21814	21814					0.034377429602727716
INSIVFATF	9	Unmodified	_INSIVFATF_					0	0	0			REV__CACNG7|p.G121D|1|0.48|ENSG00000105605|chr19:53915443-53915443|G/A|missense_variant	REV__CACNG7|p.G121D|1|0.48|ENSG00000105605|chr19:53915443-53915443|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	506.6788635253906	2	506.279118	1010.54368	-0.43579	-0.00022063	-0.31821	-0.0001611	-0.754	-0.00038173	506.2789698578935	87.371	0.61304	87.371	87.134	87.747	0					32	11	3	0	0	0	0.38578	1	32036	32036		34.402	9.0024	1	5394400	+		22232	15557	16093	16210	21815	21815					0.03883242074323334
INSKSKSLA	9	Unmodified	_INSKSKSLA_					0	0	0			REV__MYH13|p.E1240K|1|0.47|ENSG00000006788|chr17:10318810-10318810|C/T|missense_variant	REV__MYH13|p.E1240K|1|0.47|ENSG00000006788|chr17:10318810-10318810|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	474.3014831542969	2	474.279649	946.544745	-0.70864	-0.0003361	0.28397	0.00013468	-0.42468	-0.00020142	474.2797622424333	50.434	0.60855	51.188	50.854	51.462	0.75406					28	11	3	0	0	0	0.6324	1	18852	18852		13.042	0	1	15932000	+		22233	16146	16094	16211	21816	21816					0.06933456443243813
INSQLQAYHF	10	Unmodified	_INSQLQAYHF_					0	0	0			REV__ENST00000555522.1_1_14:75469672-75471687:+|nuORF	REV__ENST00000555522.1_1_14:75469672-75471687:+|nuORF	MSMS	A375_MHC_IP_R1	1	610.583251953125	2	610.806562	1219.59857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.258	1	36.258	35.758	36.758	0								0	0	0	0.14673	1	12125	12125		24.021	5.8742	1		+		22234	18090	16095	16212	21817	21817					-0.0024437112506348058
INSSRTVLSF	10	Unmodified	_INSSRTVLSF_					0	0	0			REV__nc|ENSG00000179057|Q8N9C0|IGSF22	REV__nc|ENSG00000179057|Q8N9C0|IGSF22	MULTI-MSMS	A375_MHC_IP_R2	2	375.57244873046875	3	375.208384	1122.60332	-0.22979	-8.6221E-05	0.24645	9.247E-05	0.016656	6.2495E-06	375.2084583965834	33.736	0.86183	34.488	33.891	34.753	0.75225					21	16	2	0	0	0	0.70496	1	12179	12179		5.7834	0	1	8697700	+		22235	21540	16096	16213	21818	21818					0.04692513017721467
INSTPTLNR	9	Unmodified	_INSTPTLNR_					0	0	0		ENSG00000072071|ENST00000361434|ADGRL1;nc|ENSG00000072071|O94910|ADGRL1	ENSG00000072071|ENST00000361434|ADGRL1	ENSG00000072071|ENST00000361434|ADGRL1	MULTI-MSMS	A375_MHC_IP_R1	1	511.1893310546875	2	508.28018	1014.54581	-0.044399	-2.2567E-05	-0.80077	-0.00040701	-0.84516	-0.00042958	508.27991600474587	48.335	3.2485	48.335	47.768	51.017	0					232	63	8	0	0	0	0.60101	1	16998	16998		14.838	0	1	1971599999.9999998			22236	1527	16097	16214	21819	21819					0.03911670812135526
INTARRKKNY	10	Unmodified	_INTARRKKNY_					0	0	0			REV__nc|ENSG00000189042|Q8N184-2|ZNF567	REV__nc|ENSG00000189042|Q8N184-2|ZNF567	MSMS	A375_MHC_IP_R2	2	421.9627380371094	3	421.914194	1262.72075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.984	1	36.748	36.248	37.248	0.76338								0	0	0	0.15411	1	13078	13078		7.4771	0.44295	1		+		22237	22133	16098	16215	21820	21820					0.09990090677206354
INTKENKSKL	10	Unmodified	_INTKENKSKL_					0	0	0			REV__tr|U7SS49|U7SS49_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01543PE=3SV=1	REV__tr|U7SS49|U7SS49_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01543PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	391.9283142089844	3	392.231189	1173.67174	0.018751	7.3545E-06	1.0614	0.00041633	1.0802	0.00042369	392.2315851333218	33.172	0.50669	33.172	32.887	33.393	0					11	9	2	0	0	0	0.92832	1	10715	10715		8.4443	5.7091	1	1878000	+		22238	28417	16099	16216	21821	21821					0.09184757597563475
INTKKLSARVR	11	Unmodified	_INTKKLSARVR_					0	0	0		ENST00000508662.5_1_5:149618053-149669203:-|nuORF	ENST00000508662.5_1_5:149618053-149669203:-|nuORF	ENST00000508662.5_1_5:149618053-149669203:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	429.6726989746094	3	429.273611	1284.799	-0.43679	-0.0001875	-0.67342	-0.00028908	-1.1102	-0.00047659	429.27302889328087	136.11	0.51352	136.11	135.95	136.46	0					20	9	4	0	0	0	0.73924	1	52451	52451		0.094841	0	1	2654000			22239	12881	16100	16217	21822	21822					0.16799523262397997
INTPLWPC	8	Unmodified	_INTPLWPC_					0	0	0		ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	MULTI-SECPEP	A375_MHC_IP_R2	2	471.668701171875	2	472.238938	942.463324	-0.52948	-0.00025004	-0.42668	-0.0002015	-0.95616	-0.00045154	472.2386516340505	108.88	1.0711	109.63	108.91	109.98	0.74684					26	20	2	0	0	0	0.8957	1	40948	40948		15.847	0	1	854470			22240	7828	16101	16218	21823	21823					-0.01020942520369772
INVEVRGNSKG	11	Unmodified	_INVEVRGNSKG_					0	0	0		CON__P01030;CON__ENSEMBL:ENSBTAP00000007350	CON__P01030	CON__P01030	MULTI-MSMS	A375_MHC_IP_R2	2	587.350830078125	2	586.822744	1171.63093	-0.83368	-0.00048923	-3.4124	-0.0020025	-4.2461	-0.0024917	586.8208250233862	54.19	0.55732	54.941	54.712	55.269	0.75075					16	10	2	0	0	0	0.51633	1	20432	20432		29.841	0	1	1913700		+	22241	567	16102	16219	21824	21824					0.05198416277949036
INVEVSLDPV	10	Unmodified	_INVEVSLDPV_					0	0	0			REV__ENST00000478143.2_1_6:37617732-37622777:-|nuORF	REV__ENST00000478143.2_1_6:37617732-37622777:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	542.0548706054688	2	542.797872	1083.58119	-0.60854	-0.00033031	0.1633	8.8639E-05	-0.44524	-0.00024167	543.2999090401729	89.468	0.6578	89.468	89.323	89.981	0					14	12	2	0	0	0	0.91556	1	32929	32929		10.074	5.7447	1	1173200	+		22242	17709	16103	16220	21825	21825					0.042742885492771165
INVGLLGQKGA	11	Unmodified	_INVGLLGQKGA_					0	0	0			REV__ENSG00000115361|ENST00000233710|ACADL	REV__ENSG00000115361|ENST00000233710|ACADL	MSMS	A375_MHC_IP_R1	1	535.3687133789062	2	535.321848	1068.62914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.017	1	77.017	76.517	77.517	0								0	0	0	0.15694	1	28084	28084		16.149	5.3252	1		+		22243	17878	16104	16221	21826	21826					0.09757407259985484
INVHRTKRLV	10	Unmodified	_INVHRTKRLV_					0	0	0			REV__ENST00000497784.1_2_7:140434399-140508041:-|nuORF	REV__ENST00000497784.1_2_7:140434399-140508041:-|nuORF	MSMS	A375_MHC_IP_R1	1	618.7880859375	2	618.388388	1234.76222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.25	1	145.25	144.75	145.75	0								0	0	0	0.15629	1	55684	55684		0.40072	0	1		+		22244	20041	16105	16222	21827	21827					0.15423271436497998
INVRDHLLE	9	Unmodified	_INVRDHLLE_					0	0	0			REV__tr|U7SJH5|U7SJH5_FUSNUVWFAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02047PE=4SV=1	REV__tr|U7SJH5|U7SJH5_FUSNUVWFAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02047PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	370.94549560546875	3	370.208495	1107.60366	0.24771	9.1705E-05	0.64323	0.00023813	0.89094	0.00032983	370.2084636020898	55.461	0.81184	56.212	55.678	56.489	0.75075					32	15	4	0	0	0	0.75764	1	20888	20888		0.96228	0	1	6988200	+		22245	28233	16106	16223	21828	21828					0.05415932737582807
INVRGERLVR	10	Unmodified	_INVRGERLVR_					0	0	0		ENST00000471008.5_1_6:30029301-30029535:+|nuORF	ENST00000471008.5_1_6:30029301-30029535:+|nuORF	ENST00000471008.5_1_6:30029301-30029535:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	606.7689819335938	2	606.370195	1210.72584	0.044637	2.7066E-05	-1.3806	-0.00083717	-1.336	-0.0008101	606.3693317387191	127.48	0.96087	127.48	126.76	127.72	0					31	18	3	0	0	0	0.72014	1	48912	48912		3.2813	0.78282	1	8041600			22246	12346	16107	16224	21829	21829					0.12890394539772387
INVRGERLVR	10	Unmodified	_INVRGERLVR_					0	0	0		ENST00000471008.5_1_6:30029301-30029535:+|nuORF	ENST00000471008.5_1_6:30029301-30029535:+|nuORF	ENST00000471008.5_1_6:30029301-30029535:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	607.6104125976562	2	606.370195	1210.72584	-0.45782	-0.00027761	-0.99459	-0.00060309	-1.4524	-0.0008807	606.369507407255	129.12	1.9312	129.12	128.48	130.41	0					96	37	3	0	0	0	0.72014	1	49495	49495		3.2813	0.28607	1	113470000			22247	12346	16107	16224	21830	21830					0.12890394539772387
INVSYPEWLS	10	Unmodified	_INVSYPEWLS_					0	0	0		nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	MULTI-MSMS	A375_MHC_IP_R1	1	603.6765747070312	2	604.303321	1206.59209	-0.10471	-6.3279E-05	0.1731	0.0001046	0.068385	4.1325E-05	604.3033705746941	107.76	0.56096	107.76	107.44	108	0					26	10	3	0	0	0	0.6502	1	39520	39520		17.113	0.96379	1	3627600			22248	6585	16108	16225	21831	21831					-0.0029430907643472892
INVVQKRVRSS	11	Unmodified	_INVVQKRVRSS_					0	0	0			REV__ENST00000402367.5_1_19:54711128-54711440:+|nuORF	REV__ENST00000402367.5_1_19:54711128-54711440:+|nuORF	MSMS	A375_MHC_IP_R1	1	643.5089111328125	2	643.388585	1284.76262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.71	1	132.71	132.21	133.21	0								0	0	0	0.16312	1	51172	51172		2.4985	0	1		+		22249	24412	16109	16226	21832	21832					0.13162646365708497
INVYLHIDF	9	Unmodified	_INVYLHIDF_					0	0	0		SLC6A2|p.A293V|1|0.11|ENSG00000103546|chr16:55692012-55692012|C/T|missense_variant	SLC6A2|p.A293V|1|0.11|ENSG00000103546|chr16:55692012-55692012|C/T|missense_variant	SLC6A2|p.A293V|1|0.11|ENSG00000103546|chr16:55692012-55692012|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	567.703369140625	2	567.303124	1132.5917	0.045915	2.6048E-05	1.1643	0.00066049	1.2102	0.00068654	567.302139024286	115.49	1.4697	115.49	114.72	116.19	0					42	28	4	0	0	0	0.29981	1	42355	42355		30.637	5.2372	1	3677100			22250	29191	16110	16227	21833	21833					0.030703159943641367
INWHKHFSIPV	11	Unmodified	_INWHKHFSIPV_					0	0	0			REV__ENSG00000187676|ENST00000343307|B3GLCT	REV__ENSG00000187676|ENST00000343307|B3GLCT	MULTI-SECPEP	A375_MHC_IP_R2	2	459.65985107421875	3	459.919056	1376.73534	-0.35404	-0.00016283	0.31634	0.00014549	-0.037703	-1.734E-05	460.2536982868523	132.65	0.30766	132.82	132.53	132.84	0.16487					7	5	2	0	0	0	1.0005	1	52162	52162		2.4348	0.18206	1	1228700	+		22251	22038	16111	16228	21834	21834					0.06204162825315507
INWINEEV	8	Unmodified	_INWINEEV_					0	0	0		nc|ENSG00000138798|P01133-3|EGF;ENSG00000138798|ENST00000265171|EGF;nc|ENSG00000138798|P01133-2|EGF	nc|ENSG00000138798|P01133-3|EGF	nc|ENSG00000138798|P01133-3|EGF	MSMS	A375_MHC_IP_R1	1	508.6925048828125	2	508.756007	1015.49746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.36	1	55.36	54.86	55.86	0								0	0	0	0.16876	1	19797	19797		34.187	7.8461	1				22252	5038	16112	16229	21835	21835					-0.00966822827751912
INYEEFKKAL	10	Unmodified	_INYEEFKKAL_					0	0	0		ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	MULTI-SECPEP	A375_MHC_IP_R2	2	419.2840270996094	3	418.895806	1253.66559	-0.32287	-0.00013525	-1.0134	-0.00042452	-1.3363	-0.00055977	418.89560975777215	71.981	0.25327	72.715	72.567	72.82	0.73421					7	4	2	0	0	0	0.94044	1	27259	27259		0.69767	0	1	636020			22253	6385	16113	16230	21836	21836					0.04890239366068272
INYLLHMIL	9	Unmodified	_INYLLHMIL_					0	0	0			REV__ENSG00000047188|ENST00000161863|YTHDC2	REV__ENSG00000047188|ENST00000161863|YTHDC2	MSMS	A375_MHC_IP_R1	1	377.1177978515625	3	377.219455	1128.63654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.867	1	91.867	91.367	92.367	0								0	0	0	0.15486	1	33756	33756		1.0715	0	1		+		22254	16358	16114	16231	21837	21837					0.0773642353606192
IPCTPKGCLEL	11	Unmodified	_IPCTPKGCLEL_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1;ENST00000555252.5_1_14:64855058-64907131:+|nuORF	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MSMS	A375_MHC_IP_R2	2	587.2333374023438	2	587.303952	1172.59335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.3	1	127.57	127.07	128.07	0.26593								0	0	0	0.16124	1	49900	49900		15.248	5.8654	1				22255	2212	16115	16232	21838	21838					0.013958656964405236
IPDDTFEYEQ	10	Unmodified	_IPDDTFEYEQ_					0	0	0			REV__ENSG00000171148|ENST00000301964|TADA3	REV__ENSG00000171148|ENST00000301964|TADA3	MULTI-MSMS	A375_MHC_IP_R2	2	628.75732421875	2	628.769508	1255.52446	-0.73231	-0.00046045	4.2893	0.002697	3.557	0.0022365	629.2751361732714	91.821	0.25141	92.556	92.478	92.729	0.7345					6	4	2	0	0	0	0.71245	1	34912	34912		6.7232	0.99131	1	1962600	+		22256	21047	16116	16233	21839	21839					-0.09307803797901215
IPEAWSCAWSL	11	Unmodified	_IPEAWSCAWSL_					0	0	0		ENSG00000182308|ENST00000333141|DCAF4L1	ENSG00000182308|ENST00000333141|DCAF4L1	ENSG00000182308|ENST00000333141|DCAF4L1	MULTI-SECPEP	A375_MHC_IP_R1	1	421.2917785644531	3	421.533991	1261.58014	-0.13817	-5.8243E-05	-0.37174	-0.0001567	-0.50991	-0.00021494	421.53391377367154	19.394	0.20283	19.394	19.268	19.471	0					5	3	2	0	0	0	0.99738	1	4709	4709		1.1098	0	1	5823400			22257	8398	16117	16234	21840	21840					-0.04018249091268444
IPEEEKIRS	9	Unmodified	_IPEEEKIRS_					0	0	0		PCLO|p.M3987*|2|0.34|ENSG00000186472|chr7:82916028-82916028|A/-|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO;PCLO|p.T2697Qfs*9|1|0.18|ENSG00000186472|chr7:82952864-82952864|T/-|frameshift_variant;PCLO|p.E1231K|1|0.43|ENSG00000186472|chr7:82966097-82966097|C/T|missense_variant	PCLO|p.M3987*|2|0.34|ENSG00000186472|chr7:82916028-82916028|A/-|frameshift_variant	PCLO|p.M3987*|2|0.34|ENSG00000186472|chr7:82916028-82916028|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	367.6211853027344	3	367.536389	1099.58734	-0.28086	-0.00010323	-0.17325	-6.3677E-05	-0.45411	-0.0001669	367.53649502953067	25.705	1.0185	26.365	25.735	26.754	0.65992					30	19	3	0	0	0	0.54812	1	8728	8728		24.991	6.6179	1	2773500			22258	8749	16118	16235	21841	21841					0.041528067808030755
IPFKDKIREKQ	11	Unmodified	_IPFKDKIREKQ_					0	0	0		ENSG00000111364|ENST00000238146|DDX55;nc|ENSG00000111364|Q8NHQ9-2|DDX55	ENSG00000111364|ENST00000238146|DDX55	ENSG00000111364|ENST00000238146|DDX55	MULTI-SECPEP	A375_MHC_IP_R2	2	468.1843566894531	3	467.945271	1400.81398	-0.43674	-0.00020437	-0.68716	-0.00032155	-1.1239	-0.00052592	467.9446638759453	143.06	1.6727	143.09	141.77	143.45	0.030731					43	32	2	0	0	0	1.0012	1	55599	55599		1.2148	0	1	3649400			22259	2989	16119	16236	21842	21842					0.12960970339736377
IPFMLILV	8	Unmodified	_IPFMLILV_					0	0	0		nc|ENSG00000262085|Q8NH06|OR1P1	nc|ENSG00000262085|Q8NH06|OR1P1	nc|ENSG00000262085|Q8NH06|OR1P1	MSMS	A375_MHC_IP_R2	2	473.28790283203125	2	473.295725	944.576897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.162	1	54.913	54.413	55.413	0.75092								0	0	0	0.16876	1	20443	20443		24.21	0	1				22260	14930	16120	16237	21843	21843					0.1023915259269188
IPFQGVFSIFT	11	Unmodified	_IPFQGVFSIFT_					0	0	0		ENSG00000074276|ENST00000261944|CDHR2	ENSG00000074276|ENST00000261944|CDHR2	ENSG00000074276|ENST00000261944|CDHR2	MULTI-SECPEP	A375_MHC_IP_R1	1	418.931396484375	3	419.228897	1254.66486	-0.059388	-2.4897E-05	0.63205	0.00026498	0.57267	0.00024008	419.2294198008612	32.933	0.40511	32.933	32.634	33.04	0					10	7	2	0	0	0	0.99227	1	10576	10576		1.2148	0	1	820680			22261	1580	16121	16238	21844	21844					0.04771444716993756
IPFTARYRGNY	11	Unmodified	_IPFTARYRGNY_					0	0	0		nc|ENSG00000197057|Q6ZMT9-2|DTHD1;nc|ENSG00000197057|Q6ZMT9|DTHD1;ENSG00000197057|ENST00000639862|DTHD1	nc|ENSG00000197057|Q6ZMT9-2|DTHD1	nc|ENSG00000197057|Q6ZMT9-2|DTHD1	MULTI-MSMS	A375_MHC_IP_R2	2	453.63763427734375	3	453.238566	1356.69387	-0.50577	-0.00022923	-1.3533	-0.00061336	-1.859	-0.00084259	453.238019205864	18.905	0.16035	19.508	19.423	19.583	0.60308					8	4	3	0	0	0	0.73016	1	5719	5719		4.4062	0.56024	1	36565000			22262	9111	16122	16239	21845	21845					0.029789820659971156
IPFYWWLDMWR	11	Unmodified	_IPFYWWLDMWR_					0	0	0		ENSG00000257008|ENST00000582579|GPR142;nc|ENSG00000257008|Q7Z601|GPR142	ENSG00000257008|ENST00000582579|GPR142	ENSG00000257008|ENST00000582579|GPR142	MULTI-SECPEP	A375_MHC_IP_R1	1	538.16162109375	3	538.263835	1611.76968	-0.53503	-0.00028799	-0.68939	-0.00037107	-1.2244	-0.00065906	538.263013528698	51.959	0.45965	51.959	51.676	52.136	0					10	8	2	0	0	0	1.001	1	18447	18447		1.4551	0.12547	1	1749400			22263	9901	16123	16240	21846	21846					-0.011737570781178874
IPGRQIIEV	9	Unmodified	_IPGRQIIEV_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	513.2112426757812	2	512.811116	1023.60768	-0.54438	-0.00027916	-0.94696	-0.00048561	-1.4913	-0.00076478	512.8110726135552	76.27	0.86134	76.27	75.966	76.827	0					25	16	3	0	0	0	0.55359	1	27838	27838		15.847	6.4641	1	1344500			22264	9268	16124	16241	21847	21847					0.09682022231288556
IPGSPHPF	8	Unmodified	_IPGSPHPF_					0	0	0		ENSG00000265491|ENST00000582693|RNF115	ENSG00000265491|ENST00000582693|RNF115	ENSG00000265491|ENST00000582693|RNF115	MULTI-SECPEP	A375_MHC_IP_R1	1	426.62451171875	2	426.224146	850.433738	-0.12462	-5.3118E-05	0.94291	0.00040189	0.81828	0.00034877	426.2245470357364	74.294	0.55792	74.294	74.095	74.653	0					18	10	3	0	0	0	0.97144	1	27101	27101		9.3474	0	1	1241800			22265	9959	16125	16242	21848	21848					0.002538615258004029
IPGSPHPF	8	Unmodified	_IPGSPHPF_					0	0	0		ENSG00000265491|ENST00000582693|RNF115	ENSG00000265491|ENST00000582693|RNF115	ENSG00000265491|ENST00000582693|RNF115	MULTI-MSMS	A375_MHC_IP_R2	2	426.6244201660156	2	426.224146	850.433738	-0.13727	-5.8506E-05	1.2441	0.00053027	1.1068	0.00047177	426.22478782251267	73.483	1.0683	74.218	73.99	75.058	0.73541					25	20	2	0	0	0	0.75322	1	27909	27909		19.439	4.8573	1	1361900			22266	9959	16125	16242	21849	21849					0.002538615258004029
IPHKGLQVDY	10	Unmodified	_IPHKGLQVDY_					0	0	0		ENST00000345496.6_1_21:46190903-46191107:-|nuORF	ENST00000345496.6_1_21:46190903-46191107:-|nuORF	ENST00000345496.6_1_21:46190903-46191107:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	389.9693298339844	3	390.548629	1168.62406	-0.35945	-0.00014038	0.32044	0.00012515	-0.039016	-1.5238E-05	390.5486845363862	39.129	0.51178	39.904	39.504	40.016	0.77451					14	9	2	0	0	0	0.90853	1	14418	14418		6.1918	0	1	1148700			22267	10906	16126	16243	21850	21850					0.04649103397377985
IPIDFEIDFEY	11	Unmodified	_IPIDFEIDFEY_					0	0	0			REV__ENSG00000143222|ENST00000368003|UFC1	REV__ENSG00000143222|ENST00000368003|UFC1	MULTI-MSMS	A375_MHC_IP_R1	1	467.95880126953125	3	467.55886	1399.65475	-0.030984	-1.4487E-05	0.068878	3.2205E-05	0.037894	1.7718E-05	467.55884998739447	70.156	0.35616	70.156	69.933	70.289	0					10	6	2	0	0	0	0.72851	1	25505	25505		10.315	2.8862	1	1551100	+		22268	19342	16127	16244	21851	21851					-0.029092077989162135
IPIDFEIDFEY	11	Unmodified	_IPIDFEIDFEY_					0	0	0			REV__ENSG00000143222|ENST00000368003|UFC1	REV__ENSG00000143222|ENST00000368003|UFC1	MULTI-SECPEP	A375_MHC_IP_R1	1	467.59710693359375	3	467.55886	1399.65475	-0.030984	-1.4487E-05	0.068878	3.2205E-05	0.037894	1.7718E-05	467.55884998739447	70.156	0.35616	70.156	69.933	70.289	0					10	6	2	0	0	0	0.92254	1	25511	25511		18.721	4.5031	1	1551100	+		22269	19342	16127	16244	21852	21852					-0.029092077989162135
IPIDRDFF	8	Unmodified	_IPIDRDFF_					0	0	0		ALDH2|p.G165R|1|0.22|ENSG00000111275|chr12:111789875-111789875|G/A|missense_variant	ALDH2|p.G165R|1|0.22|ENSG00000111275|chr12:111789875-111789875|G/A|missense_variant	ALDH2|p.G165R|1|0.22|ENSG00000111275|chr12:111789875-111789875|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	512.16796875	2	511.768917	1021.52328	-0.41289	-0.00021131	-0.47398	-0.00024257	-0.88687	-0.00045387	511.7683180351897	57.104	0.56018	57.104	56.804	57.364	0					18	10	2	0	0	0	0.86765	1	20453	20453		32.117	22.043	1	7864200			22270	100	16128	16245	21853	21853					0.013380714145114325
IPIDRDFF	8	Unmodified	_IPIDRDFF_					0	0	0		ALDH2|p.G165R|1|0.22|ENSG00000111275|chr12:111789875-111789875|G/A|missense_variant	ALDH2|p.G165R|1|0.22|ENSG00000111275|chr12:111789875-111789875|G/A|missense_variant	ALDH2|p.G165R|1|0.22|ENSG00000111275|chr12:111789875-111789875|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1675415039062	2	511.768917	1021.52328	-1.0663	-0.00054568	0.49745	0.00025458	-0.56882	-0.0002911	511.7684748890404	56.386	0.61186	57.136	56.745	57.356	0.75015					34	11	4	0	0	0	0.78043	1	21257	21257		32.117	8.9685	1	9590500			22271	100	16128	16245	21854	21854					0.013380714145114325
IPIIICFAY	9	Unmodified	_IPIIICFAY_					0	0	0			REV__nc|ENSG00000154265|Q8WWZ7-3|ABCA5	REV__nc|ENSG00000154265|Q8WWZ7-3|ABCA5	MULTI-MSMS	A375_MHC_IP_R1	1	527.1954345703125	2	526.796089	1051.57763	-0.63206	-0.00033296	-0.81903	-0.00043146	-1.4511	-0.00076442	526.7955477976053	31.064	0.50611	31.064	30.857	31.363	0					17	9	2	0	0	0	0.22067	1	9968	9968		36.466	8.2929	1	2303000	+		22272	19877	16129	16246	21855	21855					0.05389947241724258
IPIIICFAY	9	Unmodified	_IPIIICFAY_					0	0	0			REV__nc|ENSG00000154265|Q8WWZ7-3|ABCA5	REV__nc|ENSG00000154265|Q8WWZ7-3|ABCA5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	526.796089	1051.57763	-0.63206	-0.00033296	-0.81903	-0.00043146	-1.4511	-0.00076442	526.7955477976053	31.064	0.50611	31.064	30.857	31.363	0	-0.0363	0.00012738	NaN	36.466	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2303000	+		22273	19877	16129	16246							0.05389947241724258
IPIIICFAY	9	Unmodified	_IPIIICFAY_					0	0	0			REV__nc|ENSG00000154265|Q8WWZ7-3|ABCA5	REV__nc|ENSG00000154265|Q8WWZ7-3|ABCA5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	526.796089	1051.57763	-0.47086	-0.00024805	-1.0352	-0.00054536	-1.5061	-0.00079341	526.7954416832126	30.418	0.65726	31.137	30.809	31.467	0.71857	0.0363	-0.00010043	NaN	36.466	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2352300	+		22274	19877	16129	16246							0.05389947241724258
IPIKAAKA	8	Unmodified	_IPIKAAKA_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.Y6402Ffs*2|1|0.34|ENSG00000183091|chr2:151492486-151492487|AT/-|frameshift_variant;NEB|p.V4554Gfs*42|1|0.12|ENSG00000183091|chr2:151562738-151562739|-/CC|frameshift_variant;NEB|p.L4555Rfs*43|1|0.12|ENSG00000183091|chr2:151562736-151562737|-/CCTGCTCT|frameshift_variant;NEB|p.S2912Pfs*17|1|0.33|ENSG00000183091|chr2:151640012-151640012|A/-|frameshift_variant;NEB|p.E2544K|2|0.41|ENSG00000183091|chr2:151644482-151644482|C/T|missense_variant	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	A375_MHC_IP_R2	2	406.67364501953125	2	406.273638	810.532724	0.0050949	2.0699E-06	-0.094755	-3.8496E-05	-0.08966	-3.6426E-05	406.2735015732306	77.498	0.45795	78.241	78.062	78.52	0.74293					11	8	2	0	0	0	0.75322	1	29441	29441		19.439	0	1	1384400			22275	8464	16130	16247	21856	21856					0.11987884490690703
IPIKAAKA	8	Unmodified	_IPIKAAKA_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.Y6402Ffs*2|1|0.34|ENSG00000183091|chr2:151492486-151492487|AT/-|frameshift_variant;NEB|p.V4554Gfs*42|1|0.12|ENSG00000183091|chr2:151562738-151562739|-/CC|frameshift_variant;NEB|p.L4555Rfs*43|1|0.12|ENSG00000183091|chr2:151562736-151562737|-/CCTGCTCT|frameshift_variant;NEB|p.S2912Pfs*17|1|0.33|ENSG00000183091|chr2:151640012-151640012|A/-|frameshift_variant;NEB|p.E2544K|2|0.41|ENSG00000183091|chr2:151644482-151644482|C/T|missense_variant	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MULTI-MATCH	A375_MHC_IP_R1	1		2	406.273638	810.532724	-0.1453	-5.9033E-05	0.53984	0.00021932	0.39454	0.00016029	406.2736994432017	78.53	0.3547	78.53	78.352	78.707	0	0.14482	0.00024537	NaN	19.439	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1343300			22276	8464	16130	16247							0.11987884490690703
IPINNIIVGG	10	Unmodified	_IPINNIIVGG_					0	0	0		ENSG00000132432|ENST00000352861|SEC61G	ENSG00000132432|ENST00000352861|SEC61G	ENSG00000132432|ENST00000352861|SEC61G	MULTI-SECPEP	A375_MHC_IP_R1	1	505.7049255371094	2	505.305667	1008.59678	-0.38174	-0.00019289	-0.90688	-0.00045825	-1.2886	-0.00065114	505.30519353598066	99.674	0.40247	99.674	99.422	99.825	0					13	7	2	0	0	0	0.57563	1	36617	36617		32.305	11.852	1	2495700			22277	4407	16131	16248	21857	21857					0.09282619857003738
IPINNIIVGG	10	Unmodified	_IPINNIIVGG_					0	0	0		ENSG00000132432|ENST00000352861|SEC61G	ENSG00000132432|ENST00000352861|SEC61G	ENSG00000132432|ENST00000352861|SEC61G	MULTI-MSMS	A375_MHC_IP_R2	2	505.70550537109375	2	505.305667	1008.59678	-0.59343	-0.00029986	0.15136	7.6484E-05	-0.44207	-0.00022338	505.305727485614	98.9	0.40637	99.66	99.352	99.758	0.75977					14	7	2	0	0	0	0.33603	1	37530	37530		37.974	14.184	1	2159800			22278	4407	16131	16248	21858	21858					0.09282619857003738
IPIVVQSR	8	Unmodified	_IPIVVQSR_					0	0	0			REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3	REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3	MULTI-SECPEP	A375_MHC_IP_R1	1	455.6009826660156	2	456.287277	910.560001	-0.21582	-9.8477E-05	-0.086513	-3.9475E-05	-0.30234	-0.00013795	456.28715670118356	73.158	0.30524	73.158	72.98	73.285	0					6	5	2	0	0	0	0.972	1	26646	26646		4.3292	0.38484	1	461580	+		22279	16478	16132	16249	21859	21859					0.10114368031088361
IPKERRKY	8	Unmodified	_IPKERRKY_					0	0	0		nc|ENSG00000001167|P23511-2|NFYA;ENSG00000001167|ENST00000341376|NFYA	nc|ENSG00000001167|P23511-2|NFYA	nc|ENSG00000001167|P23511-2|NFYA	MULTI-MSMS	A375_MHC_IP_R1	1	364.2890625	3	363.889097	1088.64546	0.0081143	2.9527E-06	0.27438	9.9844E-05	0.28249	0.0001028	363.88908360134815	19.293	0.19848	19.293	19.221	19.42	0					7	5	2	0	0	0	0.77675	1	4762	4762		6.7232	0.53132	1	12661000			22280	843	16133	16250	21860	21860					0.10468533216749165
IPKKKAAT	8	Unmodified	_IPKKKAAT_					0	0	0		nc|ENSG00000136715|Q9H0E3-2|SAP130;nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	MULTI-MSMS	A375_MHC_IP_R2	2	856.79052734375	1	856.561464	855.554188	-0.56222	-0.00048158	0.12076	0.00010344	-0.44146	-0.00037814	856.5613881560239	89.111	0.39962	89.843	89.685	90.085	0.7318					12	7	2	0	0	0	0.77717	1	33900	33900		5.2307	2.3415	1	2222900			22281	4808	16134	16251	21861	21861					0.12063269519410369
IPKNWEIGL	9	Unmodified	_IPKNWEIGL_					0	0	0			REV__tr|U7T6X5|U7T6X5_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00041PE=3SV=1	REV__tr|U7T6X5|U7T6X5_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00041PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	535.6658935546875	2	535.305667	1068.59678	-0.62409	-0.00033408	-0.32013	-0.00017137	-0.94422	-0.00050545	535.305757758715	94.288	0.45599	95.033	94.818	95.274	0.74474					13	8	3	0	0	0	0.77834	1	35781	35781		2.0598	0	1	742490	+		22282	28871	16135	16252	21862	21862					0.06522619856968959
IPKQYKKYWNE	11	Unmodified	_IPKQYKKYWNE_					0	0	0			REV__ENST00000461622.1_1_7:65429142-65432870:-|nuORF	REV__ENST00000461622.1_1_7:65429142-65432870:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	499.9557800292969	3	499.601393	1495.78235	-0.86613	-0.00043272	-0.59316	-0.00029634	-1.4593	-0.00072906	499.60117451876636	19.921	0.96435	20.531	20.044	21.008	0.61029					54	18	4	0	0	0	0.73795	1	6268	6268		1.3296	1.3296	1	8798000	+		22283	20953	16136	16253	21863	21863					0.05428977585825123
IPLRSGPA	8	Unmodified	_IPLRSGPA_					0	0	0		nc|ENSG00000116337|Q01433-4|AMPD2;ENST00000486282.6_1_1:110163774-110168851:+|nuORF	nc|ENSG00000116337|Q01433-4|AMPD2	nc|ENSG00000116337|Q01433-4|AMPD2	MULTI-MSMS	A375_MHC_IP_R1	1	406.14532470703125	2	405.745245	809.475937	0.22471	9.1175E-05	0.072982	2.9612E-05	0.29769	0.00012079	405.7451991539505	44.788	0.55727	44.788	44.575	45.132	0					30	10	4	0	0	0	0.68328	1	15633	15633		39.957	0	1	10722000			22284	14557	16137	16254	21864	21864					0.06357836934182615
IPLVGCGFV	9	Unmodified	_IPLVGCGFV_					0	0	0		ENSG00000144481|ENST00000324695|TRPM8	ENSG00000144481|ENST00000324695|TRPM8	ENSG00000144481|ENST00000324695|TRPM8	MULTI-SECPEP	A375_MHC_IP_R2	2	904.8945922851562	1	904.496087	903.48881	-0.33406	-0.00030216	-0.32672	-0.00029552	-0.66078	-0.00059767	904.495846159745	78.559	2.5891	79.303	78.574	81.163	0.74474					88	50	3	0	0	0	0.73662	1	29632	29632		14.582	3.4672	1	9629800			22285	5488	16138	16255	21865	21865					0.033205320020670115
IPMYRQLQFEE	11	Unmodified	_IPMYRQLQFEE_					0	0	0			REV__ENST00000502850.5_1_4:77053774-77066720:-|nuORF	REV__ENST00000502850.5_1_4:77053774-77066720:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	727.5337524414062	2	727.360844	1452.70714	-0.54306	-0.000395	-3.7995	-0.0027636	-4.3425	-0.0031586	727.3565668759159	96.319	0.25554	96.319	96.12	96.376	0					5	4	2	0	0	0	0.99424	1	35397	35397		8.1555	2.4237	1	779510	+		22286	25507	16139	16256	21866	21866					-0.0011094793690062943
IPNIFFFLV	9	Unmodified	_IPNIFFFLV_					0	0	0		HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant;HTT|p.S2672Rfs*25|1|0.31|ENSG00000197386|chr4:3228913-3228913|T/-|frameshift_variant;ENSG00000197386|ENST00000355072|HTT;ENST00000510626.5_1_4:3131970-3189635:+|nuORF	HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant	HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	554.7061767578125	2	555.323328	1108.6321	-0.94296	-0.00052365	1.7082	0.00094861	0.76525	0.00042496	555.3253472211821	50.395	0.25435	51.149	50.955	51.209	0.75406					6	4	2	0	0	0	0.74651	1	18907	18907		13.508	6.2187	1	795760			22287	9151	16140	16257	21867	21867					0.08213282384804188
IPPAVERVQPV	11	Unmodified	_IPPAVERVQPV_					0	0	0		nc|ENSG00000154222|Q5T0F9-3|CC2D1B;ENSG00000154222|ENST00000284376|CC2D1B;nc|ENSG00000154222|Q5T0F9|CC2D1B;ENST00000491136.6_1_1:52823963-52826194:-|nuORF;ENST00000460261.5_1_1:52822810-52825784:-|nuORF	nc|ENSG00000154222|Q5T0F9-3|CC2D1B	nc|ENSG00000154222|Q5T0F9-3|CC2D1B	MULTI-MSMS	A375_MHC_IP_R2	2	402.6312255859375	3	402.239796	1203.69756	-0.29145	-0.00011723	-0.43458	-0.00017481	-0.72603	-0.00029204	402.2396376163089	19.279	0.80917	19.882	19.683	20.492	0.60308					21	15	2	0	0	0	0.73439	1	5949	5949		4.7159	0	1	884000			22288	6070	16141	16258	21868	21868					0.10385651839851562
IPPDSQNLS	9	Unmodified	_IPPDSQNLS_					0	0	0		ADH1C|p.V295I|1|0.34|ENSG00000248144|chr4:99340656-99340656|C/T|missense_variant	ADH1C|p.V295I|1|0.34|ENSG00000248144|chr4:99340656-99340656|C/T|missense_variant	ADH1C|p.V295I|1|0.34|ENSG00000248144|chr4:99340656-99340656|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	485.3640441894531	2	485.745639	969.476725	-0.69659	-0.00033837	0.54188	0.00026321	-0.15472	-7.5153E-05	485.7458859878995	40.476	0.45832	41.251	41.031	41.489	0.77451					18	8	3	0	0	0	0.14422	1	15017	15017		43.858	0	1	4878100			22289	76	16142	16259	21869	21869					-0.009234132074197987
IPPEYRHL	8	Unmodified	_IPPEYRHL_					0	0	0		nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST;nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST	nc|ENSG00000153113|P20810-3|CAST	nc|ENSG00000153113|P20810-3|CAST	MULTI-SECPEP	A375_MHC_IP_R1	1	512.18017578125	2	512.782359	1023.55016	-0.69516	-0.00035647	1.893	0.00097071	1.1979	0.00061424	512.7835023986016	129.88	0.30344	129.88	129.7	130.01	0					10	5	3	0	0	0	0.93416	1	49967	49967		5.2307	0	1	3238800			22290	6007	16143	16260	21870	21870					0.03933180025705951
IPPFSCEDLCS	11	Unmodified	_IPPFSCEDLCS_					0	0	0		nc|ENSG00000022556|Q9NX02-4|NLRP2;nc|ENSG00000022556|Q9NX02-5|NLRP2;nc|ENSG00000022556|Q9NX02-2|NLRP2;ENSG00000022556|ENST00000448584|NLRP2;ENST00000540597.5_1_19:55501708-55512263:+|nuORF	nc|ENSG00000022556|Q9NX02-4|NLRP2	nc|ENSG00000022556|Q9NX02-4|NLRP2	MSMS	A375_MHC_IP_R1	1	404.16595458984375	3	404.175475	1209.5046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.144	1	42.144	41.644	42.644	0								0	0	0	0.1629	1	14589	14589		1.4551	0	1				22291	1069	16144	16261	21871	21871					-0.09177594333846173
IPPLTQTPV	9	Unmodified	_IPPLTQTPV_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-SECPEP	A375_MHC_IP_R1	1	483.6506042480469	2	483.286943	964.559333	-0.26676	-0.00012892	-0.1751	-8.4625E-05	-0.44186	-0.00021355	483.28683743598464	82.86	0.96185	82.86	82.622	83.583	0					22	18	2	0	0	0	0.47368	1	30495	30495		26.884	2.8631	1	769660		+	22292	582	16145	16262	21872	21872					0.07563528591390423
IPPYHDYRVYC	11	Unmodified	_IPPYHDYRVYC_					0	0	0		ENSG00000130508|ENST00000252804|PXDN;PXDN|p.D1187Efs*3|1|0.08|ENSG00000130508|chr2:1648215-1648219|TCAGG/-|frameshift_variant	ENSG00000130508|ENST00000252804|PXDN	ENSG00000130508|ENST00000252804|PXDN	MULTI-SECPEP	A375_MHC_IP_R1	1	476.2918395996094	3	475.892179	1424.65471	-0.68733	-0.00032709	-0.55209	-0.00026273	-1.2394	-0.00058983	475.8919931734599	24.422	0.40171	24.422	24.296	24.698	0					11	7	2	0	0	0	0.98968	1	6933	6933		9.7643	0.52048	1	9901900			22293	4247	16146	16263	21873	21873					-0.04063486279892459
IPPYHDYRVYC	11	Unmodified	_IPPYHDYRVYC_					0	0	0		ENSG00000130508|ENST00000252804|PXDN;PXDN|p.D1187Efs*3|1|0.08|ENSG00000130508|chr2:1648215-1648219|TCAGG/-|frameshift_variant	ENSG00000130508|ENST00000252804|PXDN	ENSG00000130508|ENST00000252804|PXDN	MULTI-MSMS	A375_MHC_IP_R2	2	476.2915954589844	3	475.892179	1424.65471	-0.79758	-0.00037956	-0.72857	-0.00034672	-1.5262	-0.00072628	475.8919682302997	23.742	0.25337	24.372	24.232	24.485	0.63014					8	4	3	0	0	0	0.72964	1	7712	7712		9.2438	2.2067	1	7583200			22294	4247	16146	16263	21874	21874					-0.04063486279892459
IPPYHDYRVYC	11	Unmodified	_IPPYHDYRVYC_					0	0	0		ENSG00000130508|ENST00000252804|PXDN;PXDN|p.D1187Efs*3|1|0.08|ENSG00000130508|chr2:1648215-1648219|TCAGG/-|frameshift_variant	ENSG00000130508|ENST00000252804|PXDN	ENSG00000130508|ENST00000252804|PXDN	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	475.892179	1424.65471	-0.79758	-0.00037956	-0.72857	-0.00034672	-1.5262	-0.00072628	475.8919682302997	23.742	0.25337	24.372	24.232	24.485	0.63014	-0.024959	-0.00012781	NaN	9.2438	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7583200			22295	4247	16146	16263							-0.04063486279892459
IPQEIQRLK	9	Unmodified	_IPQEIQRLK_					0	0	0		ENSG00000188306|ENST00000340806|LRRIQ4	ENSG00000188306|ENST00000340806|LRRIQ4	ENSG00000188306|ENST00000340806|LRRIQ4	MULTI-SECPEP	A375_MHC_IP_R1	1	375.9523620605469	3	375.564391	1123.67134	-0.016642	-6.2502E-06	-0.084297	-3.1659E-05	-0.10094	-3.7909E-05	375.564335410077	30.111	1.4033	30.111	29.403	30.806	0					37	27	2	0	0	0	0.40377	1	9370	9370		34.932	20.527	1	6501700			22296	8899	16147	16264	21875	21875					0.11445382668375714
IPQEIQRLK	9	Unmodified	_IPQEIQRLK_					0	0	0		ENSG00000188306|ENST00000340806|LRRIQ4	ENSG00000188306|ENST00000340806|LRRIQ4	ENSG00000188306|ENST00000340806|LRRIQ4	MULTI-MSMS	A375_MHC_IP_R2	2	375.9642333984375	3	375.564391	1123.67134	-0.50585	-0.00018998	0.076429	2.8704E-05	-0.42943	-0.00016128	375.5644013368621	28.972	1.1012	29.671	29.333	30.434	0.69872					38	21	2	0	0	0	0.2415	1	10040	10040		34.932	2.8946	1	10353000			22297	8899	16147	16264	21876	21876					0.11445382668375714
IPQHWYCD	8	Unmodified	_IPQHWYCD_					0	0	0		ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	MSMS	A375_MHC_IP_R2	2	531.1864013671875	2	531.229102	1060.44365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.791	1	80.536	80.036	81.036	0.74474								0	0	0	0.16876	1	30287	30287		5.7604	1.0044	1				22298	1739	16148	16265	21877	21877					-0.08415318531137927
IPQSCEQCL	9	Unmodified	_IPQSCEQCL_					0	0	0		ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	MULTI-SECPEP	A375_MHC_IP_R1	1	510.45147705078125	2	510.728077	1019.4416	-0.50601	-0.00025843	-0.56332	-0.0002877	-1.0693	-0.00054614	510.72790960912425	58.912	0.61121	58.912	58.633	59.245	0					17	11	2	0	0	0	0.76187	1	21243	21243		11.64	11.64	1	3874800			22299	2072	16149	16266	21878	21878					-0.06734115331255452
IPQTFDPNAF	10	Unmodified	_IPQTFDPNAF_					0	0	0			REV__ENSG00000115091|ENST00000263238|ACTR3	REV__ENSG00000115091|ENST00000263238|ACTR3	MULTI-MSMS	A375_MHC_IP_R1	1	575.72265625	2	575.282389	1148.55022	-0.068912	-3.9644E-05	-3.8402	-0.0022092	-3.9091	-0.0022488	575.2791805238497	105.74	0.30546	105.74	105.6	105.91	0					8	5	2	0	0	0	0.66712	1	38790	38790		15.847	2.3393	1	1904100	+		22300	17855	16150	16267	21879	21879					-0.018108647649796694
IPQVNCDS	8	Unmodified	_IPQVNCDS_					0	0	0		ENST00000425115.1_1_3:44751367-44751973:-|nuORF	ENST00000425115.1_1_3:44751367-44751973:-|nuORF	ENST00000425115.1_1_3:44751367-44751973:-|nuORF	MSMS	A375_MHC_IP_R2	2	438.5999755859375	2	438.20001	874.385467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.472	1	68.208	67.708	68.708	0.73631								0	0	0	0.16876	1	25563	25563		9.3474	2.9933	1				22301	11786	16151	16268	21880	21880					-0.05675000176415779
IPQVRTSIRA	10	Unmodified	_IPQVRTSIRA_					0	0	0			REV__ENSG00000149090|ENST00000619888|PAMR1	REV__ENSG00000149090|ENST00000619888|PAMR1	MSMS	A375_MHC_IP_R1	1	380.9451904296875	3	380.899773	1139.67749	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.256	1	32.256	31.756	32.756	0								0	0	0	0.15152	1	10406	10406		14.957	1.3423	1		+		22302	19659	16152	16269	21881	21881					0.11323900899878936
IPQWYLWRKRK	11	Unmodified	_IPQWYLWRKRK_					0	0	0			REV__ENSG00000175354|ENST00000309660|PTPN2	REV__ENSG00000175354|ENST00000309660|PTPN2	MULTI-SECPEP	A375_MHC_IP_R1	1	526.0574951171875	3	525.308655	1572.90414	-0.83569	-0.00043899	1.1231	0.00058996	0.28739	0.00015097	525.3081483331579	148.78	0.20103	148.78	148.71	148.91	0					5	3	2	0	0	0	1.0015	1	56794	56794		0.08335	0.010087	1	87619	+		22303	21340	16153	16270	21882	21882					0.14060064458772104
IPRECGACH	9	Unmodified	_IPRECGACH_					0	0	0			REV__ENSG00000089116|ENST00000261731|LHX5	REV__ENSG00000089116|ENST00000261731|LHX5	MSMS	A375_MHC_IP_R2	2	493.1273498535156	2	493.220754	984.426955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.782	1	84.521	84.021	85.021	0.73962								0	0	0	0.15486	1	31847	31847		7.9102	0	1		+		22304	16903	16154	16271	21883	21883					-0.06588142688735843
IPRNRLQSVV	10	Unmodified	_IPRNRLQSVV_					0	0	0		ENSG00000181555|ENST00000409792|SETD2;nc|ENSG00000181555|Q9BYW2-2|SETD2;nc|ENSG00000181555|Q9BYW2-3|SETD2	ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	MSMS	A375_MHC_IP_R2	2	591.4368286132812	2	591.359296	1180.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.56	1	140.61	140.11	141.11	0.04216								0	0	0	0.15531	1	55019	55019		3.5965	0	1				22305	8351	16155	16272	21884	21884					0.1209158979120275
IPRPHSRLL	9	Unmodified	_IPRPHSRLL_					0	0	0		ENST00000606525.5_1_20:32250043-32250439:-|nuORF	ENST00000606525.5_1_20:32250043-32250439:-|nuORF	ENST00000606525.5_1_20:32250043-32250439:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	362.9647521972656	3	363.561092	1087.66145	-0.37942	-0.00013794	-0.56133	-0.00020408	-0.94075	-0.00034202	363.8949066534912	23.297	0.20187	23.927	23.828	24.029	0.63015					5	3	2	0	0	0	0.7911	1	7486	7486		7.609	3.0801	1	954050			22306	13913	16156	16273	21885	21885					0.12112239453654183
IPSYYECS	8	Unmodified	_IPSYYECS_					0	0	0			REV__nc|ENSG00000003096|Q9P2N7-2|KLHL13	REV__nc|ENSG00000003096|Q9P2N7-2|KLHL13	MULTI-SECPEP	A375_MHC_IP_R2	2	960.71142578125	1	961.39716	960.389884	-0.057986	-5.5748E-05	-0.15788	-0.00015178	-0.21586	-0.00020753	961.3990917962382	119.82	0.30799	120.35	120.14	120.45	0.5321					6	5	2	0	0	0	0.972	1	45614	45614		10.183	1.5901	1	4288700	+		22307	16091	16157	16274	21886	21886					-0.09189535753500877
IPTKKSKKH	9	Unmodified	_IPTKKSKKH_					0	0	0		SON-ITSN1|1|fusion;SON-ITSN1|3|fusion;SON-ITSN1|2|fusion;SON-ITSN1|4|fusion;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-5|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-8|SON	SON-ITSN1|1|fusion	SON-ITSN1|1|fusion	MSMS	A375_MHC_IP_R2	2	356.26336669921875	3	356.229231	1065.66586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.99	1	21.602	21.102	22.102	0.61183								0	0	0	0.15486	1	6575	6575		4.5289	1.5336	1				22308	29217	16158	16275	21887	21887					0.1356570387656575
IPTLEYGFLVQ	11	Unmodified	_IPTLEYGFLVQ_					0	0	0		ENSG00000137817|ENST00000569795|PARP6;ENST00000544520.5_1_15:72546082-72558314:-|nuORF;nc|ENSG00000137817|Q2NL67-3|PARP6;nc|ENSG00000137817|Q2NL67-2|PARP6	ENSG00000137817|ENST00000569795|PARP6	ENSG00000137817|ENST00000569795|PARP6	MULTI-SECPEP	A375_MHC_IP_R2	2	426.6397399902344	3	427.23594	1278.68599	-0.11863	-5.0683E-05	-1.6799	-0.0007177	-1.7985	-0.00076838	427.235021175545	48.197	0.60368	48.955	48.628	49.231	0.75737					18	11	2	0	0	0	0.99482	1	18165	18165		9.2438	6.4005	1	1570900			22309	4920	16159	16276	21888	21888					0.0577941002584339
IPVDTNPLF	9	Unmodified	_IPVDTNPLF_					0	0	0			REV__nc|ENSG00000134759|Q6IA86-4|ELP2	REV__nc|ENSG00000134759|Q6IA86-4|ELP2	MULTI-SECPEP	A375_MHC_IP_R1	1	508.6867370605469	2	508.276575	1014.5386	-0.40823	-0.00020749	-1.9719	-0.0010022	-2.3801	-0.0012097	508.2770572195468	59.32	0.30374	59.32	59.245	59.548	0					6	5	2	0	0	0	0.60012	1	21306	21306		18.135	0	1	659670	+		22310	27236	16160	16277	21889	21889					0.03190938211696448
IPVEKLFKLLK	11	Unmodified	_IPVEKLFKLLK_					0	0	0		FGFR2|p.E711K|1|0.33|ENSG00000066468|chr10:121485459-121485459|C/T|missense_variant	FGFR2|p.E711K|1|0.33|ENSG00000066468|chr10:121485459-121485459|C/T|missense_variant	FGFR2|p.E711K|1|0.33|ENSG00000066468|chr10:121485459-121485459|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	663.9720458984375	2	664.439224	1326.86389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.49	1	125.49	124.99	125.99	0								0	0	0	0.16249	1	47779	47779		5.7319	2.1354	1				22311	13997	16161	16278	21890	21890					0.2135370501569014
IPVSPRLQSG	10	Unmodified	_IPVSPRLQSG_					0	0	0		ENST00000603798.5_1_12:51664324-51664417:-|nuORF	ENST00000603798.5_1_12:51664324-51664417:-|nuORF	ENST00000603798.5_1_12:51664324-51664417:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	527.1295776367188	2	527.306198	1052.59784	-0.86543	-0.00045635	-0.030957	-1.6324E-05	-0.89639	-0.00047267	527.3061526781323	26.373	1.0199	27.033	26.805	27.825	0.65992					57	19	5	0	0	0	0.6774	1	8980	8980		21.537	0	1	146110000			22312	13899	16162	16279	21891	21891					0.07364834225904815
IPYGKEVFY	9	Unmodified	_IPYGKEVFY_					0	0	0		CR1L|p.S501F|1|0.17|ENSG00000197721|chr1:207717551-207717551|C/T|missense_variant	CR1L|p.S501F|1|0.17|ENSG00000197721|chr1:207717551-207717551|C/T|missense_variant	CR1L|p.S501F|1|0.17|ENSG00000197721|chr1:207717551-207717551|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	558.6917724609375	2	558.292225	1114.5699	-0.75805	-0.00042322	-0.1583	-8.8379E-05	-0.91635	-0.00051159	558.2921673003755	107.63	0.91908	108.38	107.95	108.86	0.75436					65	17	5	0	0	0	0.32889	1	40596	40596		37.974	3.8716	1	54439000			22313	658	16163	16280	21892	21892					0.017195112458011863
IPYIWHIAQIE	11	Unmodified	_IPYIWHIAQIE_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-MSMS	A375_MHC_IP_R2	2	461.9864196777344	3	461.587084	1381.73942	-0.78894	-0.00036417	-0.52983	-0.00024456	-1.3188	-0.00060873	461.5868666248755	19.867	1.1166	20.477	19.892	21.008	0.61029					63	21	4	0	0	0	0.73502	1	6239	6239		4.1166	0.52395	1	16085000	+		22314	20554	16164	16281	21893	21893					0.06382207528349682
IPYNREGEYF	10	Unmodified	_IPYNREGEYF_					0	0	0		XDH|p.S412N|1|0.35|ENSG00000158125|chr2:31379874-31379874|C/T|missense_variant	XDH|p.S412N|1|0.35|ENSG00000158125|chr2:31379874-31379874|C/T|missense_variant	XDH|p.S412N|1|0.35|ENSG00000158125|chr2:31379874-31379874|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	644.9727783203125	2	644.303852	1286.59315	-0.34189	-0.00022028	-0.45337	-0.00029211	-0.79525	-0.00051239	644.3034447252224	78.276	1.0656	78.276	77.69	78.756	0					23	20	2	0	0	0	0.92772	1	28458	28458		7.609	4.6137	1	2377200			22315	30169	16165	16282	21894	21894					-0.03868094707536329
IQAAFDQDW	9	Unmodified	_IQAAFDQDW_					0	0	0		PTCH2|p.S1046Rfs*5|1|0.12|ENSG00000117425|chr1:44823348-44823364|GCCCGCAGGTTCCGGCT/-|frameshift_variant;nc|ENSG00000117425|Q9Y6C5-2|PTCH2;ENSG00000117425|ENST00000372192|PTCH2	PTCH2|p.S1046Rfs*5|1|0.12|ENSG00000117425|chr1:44823348-44823364|GCCCGCAGGTTCCGGCT/-|frameshift_variant	PTCH2|p.S1046Rfs*5|1|0.12|ENSG00000117425|chr1:44823348-44823364|GCCCGCAGGTTCCGGCT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	546.6663818359375	2	547.251089	1092.48762	-0.80791	-0.00044213	1.1088	0.00060677	0.30085	0.00016464	547.2516766198136	75.354	0.61228	76.095	75.875	76.487	0.74052					15	11	2	0	0	0	0.4261	1	28619	28619		24.021	0	1	1471600			22316	3484	16166	16283	21895	21895					-0.054920108331543815
IQAAIRSWL	9	Unmodified	_IQAAIRSWL_					0	0	0		nc|ENSG00000278259|Q96H55-4|MYO19;ENSG00000278259|ENST00000614623|MYO19	nc|ENSG00000278259|Q96H55-4|MYO19	nc|ENSG00000278259|Q96H55-4|MYO19	MULTI-SECPEP	A375_MHC_IP_R2	2	529.7109985351562	2	529.311284	1056.60801	-0.74946	-0.0003967	-0.057285	-3.0321E-05	-0.80675	-0.00042702	529.311401805901	66.103	0.45943	66.841	66.526	66.985	0.73811					12	8	2	0	0	0	0.50702	1	25087	25087		32.305	0	1	1590000			22317	10035	16167	16284	21896	21896					0.081974419511198
IQALLKGP	8	Unmodified	_IQALLKGP_					0	0	0		ENSG00000168955|ENST00000304568|TM4SF20	ENSG00000168955|ENST00000304568|TM4SF20	ENSG00000168955|ENST00000304568|TM4SF20	MSMS	A375_MHC_IP_R1	1	420.2911376953125	2	420.271096	838.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.792	1	51.792	51.292	52.292	0								0	0	0	0.16876	1	18396	18396		5.7604	0	1				22318	7365	16168	16285	21897	21897					0.10191580628088559
IQAPHYILL	9	Unmodified	_IQAPHYILL_					0	0	0			REV__SLC10A7|p.L313F|1|0.26|ENSG00000120519|chr4:146258748-146258748|G/A|missense_variant	REV__SLC10A7|p.L313F|1|0.26|ENSG00000120519|chr4:146258748-146258748|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	534.7153930664062	2	534.316035	1066.61752	-0.79595	-0.00042529	-0.028173	-1.5053E-05	-0.82412	-0.00044034	534.3159639533602	67.223	0.6087	67.959	67.648	68.256	0.73631					15	11	2	0	0	0	0.71541	1	25506	25506		11.64	3.047	1	1463800	+		22319	18126	16169	16286	21898	21898					0.08687210236666942
IQCNSIKSY	9	Unmodified	_IQCNSIKSY_					0	0	0			REV__ENSG00000143971|ENST00000272342|ETAA1	REV__ENSG00000143971|ENST00000272342|ETAA1	MSMS	A375_MHC_IP_R1	1	528.2108154296875	2	528.263142	1054.51173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.13	1	58.13	57.63	58.63	0								0	0	0	0.14169	1	20876	20876		29.082	5.9332	1		+		22320	19401	16170	16287	21899	21899					-0.013344936711291666
IQDDAVHTL	9	Unmodified	_IQDDAVHTL_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-SECPEP	A375_MHC_IP_R2	2	506.6582946777344	2	506.258914	1010.50327	-1.0118	-0.00051222	-0.47305	-0.00023949	-1.4848	-0.0007517	506.25904430358844	37.581	0.30766	38.352	38.171	38.479	0.7709					11	5	3	0	0	0	0.28475	1	13795	13795		32.305	20.665	1	3413600			22321	3341	16171	16288	21900	21900					-0.0015572431608461557
IQDFEMPTV	9	Unmodified	_IQDFEMPTV_					0	0	0		nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	MULTI-MSMS	A375_MHC_IP_R1	1	540.21826171875	2	540.257525	1078.5005	-0.58257	-0.00031474	-0.13361	-7.2182E-05	-0.71617	-0.00038692	540.2573604240956	104.75	0.7592	104.75	104.44	105.2	0					20	14	2	0	0	0	0.094655	2	38416	38416;38433		51.63	25.362	1	2943400			22322	3338	16172	16289	21901;21902	21901					-0.03561315765273321
IQDFEMPTV	9	Unmodified	_IQDFEMPTV_					0	0	0		nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	MULTI-MSMS	A375_MHC_IP_R2	2	540.6577758789062	2	540.257525	1078.5005	-0.79982	-0.00043211	-1.4573	-0.00078732	-2.2571	-0.0012194	540.2568888757561	104.01	1.1682	104.78	104.4	105.56	0.76308					36	22	3	0	0	0	0.094655	1	39349	39349		51.63	25.362	1	3389000			22323	3338	16172	16289	21903	21903					-0.03561315765273321
IQDKCVPLV	9	Carbamidomethyl (C)	_IQDKC(Carbamidomethyl (C))VPLV_	IQDKC(1)VPLV		IQDKC(62)VPLV		0	1	0		ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	MULTI-SECPEP	A375_MHC_IP_R1	1	536.6967163085938	2	536.296985	1070.57942	-0.68745	-0.00036868	0.10944	5.869E-05	-0.57801	-0.00030999	536.7984345443489	52.262	0.55874	52.262	51.982	52.541	0					21	10	3	0	0	0	0.11849	1	18583	18583		61.602	8.1979	1	5925500			22324	1076	16173	16290	21904	21904	2				0.04694956259686478
IQDLLLEEL	9	Unmodified	_IQDLLLEEL_					0	0	0		nc|ENSG00000173040|Q86UK5-2|EVC2;nc|ENSG00000173040|Q86UK5-3|EVC2;ENSG00000173040|ENST00000344408|EVC2	nc|ENSG00000173040|Q86UK5-2|EVC2	nc|ENSG00000173040|Q86UK5-2|EVC2	MULTI-SECPEP	A375_MHC_IP_R1	1	543.6948852539062	2	543.308072	1084.60159	-0.49884	-0.00027102	-0.82902	-0.00045041	-1.3279	-0.00072144	543.3080056647489	97.38	0.35265	97.38	97.187	97.54	0					11	6	2	0	0	0	0.53748	1	35722	35722		30.637	1.555	1	754890			22325	7761	16174	16291	21905	21905					0.06267459209107074
IQDPVIFYV	9	Unmodified	_IQDPVIFYV_					0	0	0		nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6;ENST00000472054.2_1_6:142738255-142764649:+|nuORF	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	MULTI-MSMS	A375_MHC_IP_R1	1	547.7028198242188	2	547.30005	1092.58555	-0.41966	-0.00022968	1.8549	0.0010152	1.4352	0.00078548	547.3010506639879	128.41	0.25369	128.41	128.23	128.48	0					12	4	4	0	0	0	0.12771	1	49320	49320		45.7	7.7256	1	14879000			22326	3085	16175	16292	21906	21906					0.04295797762847542
IQDPVIFYV	9	Unmodified	_IQDPVIFYV_					0	0	0		nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6;ENST00000472054.2_1_6:142738255-142764649:+|nuORF	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	MULTI-SECPEP	A375_MHC_IP_R1	1	1094.2083740234375	1	1093.59282	1092.58555	0.2074	0.00022681	1.2011	0.0013135	1.4085	0.0015403	1093.5940125115355	128.41	0.35368	128.41	128.23	128.58	0					10	6	2	0	0	0	0.59614	1	49260	49260		28.495	4.4739	1	47648000			22327	3085	16175	16292	21907	21907					0.04295797762847542
IQDPVIFYV	9	Unmodified	_IQDPVIFYV_					0	0	0		nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6;ENST00000472054.2_1_6:142738255-142764649:+|nuORF	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	MULTI-MATCH	A375_MHC_IP_R2	2		1	1093.59282	1092.58555	0.030255	3.3087E-05	0.58422	0.0006389	0.61448	0.00067199	1093.5934587372042	128.08	0.30508	128.35	128.17	128.48	0.26593	-0.028704	-6.9977E-05	NaN	28.495	14	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50641000			22328	3085	16175	16292							0.04295797762847542
IQEEELKKLK	10	Unmodified	_IQEEELKKLK_					0	0	0			REV__ENSG00000100345|ENST00000216181|MYH9	REV__ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	A375_MHC_IP_R1	1	629.7734375	2	629.374278	1256.734	-0.96969	-0.0006103	0.062491	3.933E-05	-0.9072	-0.00057097	629.3740962537622	145.09	0.67528	145.09	144.77	145.45	0					49	29	2	0	0	0	0.72658	1	55628	55628		0.40072	0	1	939350	+		22329	17077	16176	16293	21908	21908					0.11590483945883534
IQEEELKKLK	10	Unmodified	_IQEEELKKLK_					0	0	0			REV__ENSG00000100345|ENST00000216181|MYH9	REV__ENSG00000100345|ENST00000216181|MYH9	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	629.374278	1256.734	-0.96969	-0.0006103	0.062491	3.933E-05	-0.9072	-0.00057097	629.3740962537622	145.09	0.67528	145.09	144.77	145.45	0	-0.063808	0.00019111	NaN	0.40072	49	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	939350	+		22330	17077	16176	16293							0.11590483945883534
IQEEELKKLK	10	Unmodified	_IQEEELKKLK_					0	0	0			REV__ENSG00000100345|ENST00000216181|MYH9	REV__ENSG00000100345|ENST00000216181|MYH9	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	629.374278	1256.734	-0.6262	-0.00039412	-0.23132	-0.00014558	-0.85752	-0.0005397	629.3739444415384	145.2	0.65666	145.22	144.8	145.46	0.021408	0.063808	-0.00017872	NaN	0.40072	54	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	572700	+		22331	17077	16176	16293							0.11590483945883534
IQETCDAH	8	Unmodified	_IQETCDAH_					0	0	0		FRG2C|p.G148E|3|0.09|ENSG00000172969|chr3:75665635-75665635|G/A|missense_variant;nc|ENSG00000205097|Q64ET8|FRG2;ENSG00000225899|ENST00000425520|FRG2B;ENSG00000205097|ENST00000504750|FRG2;ENSG00000172969|ENST00000308062|FRG2C	FRG2C|p.G148E|3|0.09|ENSG00000172969|chr3:75665635-75665635|G/A|missense_variant	FRG2C|p.G148E|3|0.09|ENSG00000172969|chr3:75665635-75665635|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	915.6448974609375	1	916.382907	915.375631	-0.2061	-0.00018887	-1.0073	-0.0009231	-1.2134	-0.001112	916.3839376116849	117.06	0.55921	117.72	117.43	117.99	0.65962					14	10	2	0	0	0	0.972	1	44290	44290		2.5775	0	1	3799300			22332	7754	16177	16294	21909	21909					-0.08544188181792833
IQETCGDWY	9	Unmodified	_IQETCGDWY_					0	0	0		ENSG00000134516|ENST00000520908|DOCK2;ENST00000522138.1_1_5:169064330-169108764:+|nuORF;DOCK2|p.R36Q|1|0.33|ENSG00000134516|chr5:169654466-169654466|G/A|missense_variant;DOCK2|p.G47E|1|0.3|ENSG00000134516|chr5:169669300-169669300|G/A|missense_variant	ENSG00000134516|ENST00000520908|DOCK2	ENSG00000134516|ENST00000520908|DOCK2	MULTI-MSMS	A375_MHC_IP_R1	1	558.1921997070312	2	557.729132	1113.44371	-0.47136	-0.00026289	-0.20675	-0.00011531	-0.67812	-0.0003782	558.2302718681841	91.955	0.70743	91.955	91.554	92.261	0					17	13	2	0	0	0	0.6898	1	33810	33810		7.9102	1.187	1	4366600			22333	4583	16178	16295	21910	21910					-0.10847363321772718
IQEYRSEKSL	10	Unmodified	_IQEYRSEKSL_					0	0	0		ATP2C2|p.L616Pfs*95|1|0.4|ENSG00000064270|chr16:84453150-84453151|-/C|frameshift_variant;ENSG00000064270|ENST00000262429|ATP2C2;nc|ENSG00000064270|O75185-2|ATP2C2;nc|ENSG00000064270|O75185-3|ATP2C2	ATP2C2|p.L616Pfs*95|1|0.4|ENSG00000064270|chr16:84453150-84453151|-/C|frameshift_variant	ATP2C2|p.L616Pfs*95|1|0.4|ENSG00000064270|chr16:84453150-84453151|-/C|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	418.9591369628906	3	418.222582	1251.64592	-0.22769	-9.5224E-05	3.8488	0.0016097	3.6211	0.0015144	418.55922747769534	66.22	0.51064	66.959	66.731	67.241	0.73811					20	9	3	0	0	0	0.70012	1	25107	25107		7.4771	0	1	1305400			22334	208	16179	16296	21911	21911					0.030158633552900938
IQFTYLPLFY	10	Unmodified	_IQFTYLPLFY_					0	0	0			REV__SNAPC1|p.P69L|1|0.46|ENSG00000023608|chr14:61766953-61766953|C/T|missense_variant	REV__SNAPC1|p.P69L|1|0.46|ENSG00000023608|chr14:61766953-61766953|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	652.8464965820312	2	652.849907	1303.68526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.2	1	108.96	108.46	109.46	0.75436								0	0	0	0.15308	1	40862	40862		10.824	3.215	1		+		22335	28019	16180	16297	21912	21912					0.045566153768049844
IQGEALDPKH	10	Unmodified	_IQGEALDPKH_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6-2|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	MULTI-SECPEP	A375_MHC_IP_R2	2	369.27294921875	3	369.864617	1106.57202	-0.56614	-0.00020939	0.25037	9.2601E-05	-0.31577	-0.00011679	369.86459439072064	29.191	0.50578	29.89	29.73	30.236	0.69872					17	9	2	0	0	0	0.6774	1	10122	10122		18.721	4.3158	1	9812100			22336	5055	16181	16298	21913	21913					0.022999399835953227
IQHFLFSLCEY	11	Unmodified	_IQHFLFSLCEY_					0	0	0		ENST00000464156.5_1_2:25038511-25039636:+|nuORF;ENST00000491031.5_1_2:25016788-25038721:+|nuORF;nc|ENSG00000138092|Q9BU64-2|CENPO;ENSG00000138092|ENST00000380834|CENPO	ENST00000464156.5_1_2:25038511-25039636:+|nuORF	ENST00000464156.5_1_2:25038511-25039636:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	467.6278381347656	3	467.228679	1398.66421	-0.66564	-0.000311	-0.70312	-0.00032852	-1.3688	-0.00063952	467.2285746942202	31.37	0.66504	32.088	31.821	32.486	0.71857					20	12	3	0	0	0	0.72515	1	11065	11065		13.519	6.4816	1	5901900			22337	4956	16182	16299	21914	21914					-0.019177179943653755
IQHSEFEEV	9	Unmodified	_IQHSEFEEV_					0	0	0		nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1	nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	MULTI-MSMS	A375_MHC_IP_R2	2	559.661376953125	2	559.261653	1116.50875	-0.97051	-0.00054277	0.33492	0.00018731	-0.63559	-0.00035546	559.262047334719	38.689	0.96906	39.463	39.2	40.169	0.77451					39	18	4	0	0	0	0.10622	1	14236	14236		49.554	17.249	1	14213000			22338	2786	16183	16300	21915	21915					-0.0448404552428201
IQIQYYGSY	9	Unmodified	_IQIQYYGSY_					0	0	0			REV__ENST00000485396.5_1_3:137991866-137991905:+|nuORF	REV__ENST00000485396.5_1_3:137991866-137991905:+|nuORF	MSMS	A375_MHC_IP_R1	1	567.7131958007812	2	567.776939	1133.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.635	1	90.635	90.135	91.135	0								0	0	0	0.15486	1	33309	33309		11.64	0.81637	1		+		22339	25309	16184	16301	21916	21916					-0.02210267139230382
IQKDLDYLV	9	Unmodified	_IQKDLDYLV_					0	0	0			REV__nc|ENSG00000111913|Q9Y4F9-2|RIPOR2	REV__nc|ENSG00000111913|Q9Y4F9-2|RIPOR2	MSMS	A375_MHC_IP_R1	1	369.6369934082031	3	369.541252	1105.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.178	1	28.178	27.678	28.678	0								0	0	0	0.15486	1	8659	8659		4.5289	0	1		+		22340	17705	16185	16302	21917	21917					0.053348789289202614
IQKQEYTF	8	Unmodified	_IQKQEYTF_					0	0	0			REV__nc|ENSG00000165837|Q5W0A0-2|ERICH6B	REV__nc|ENSG00000165837|Q5W0A0-2|ERICH6B	MULTI-MSMS	A375_MHC_IP_R1	1	528.7318725585938	2	528.771657	1055.52876	-0.19516	-0.00010319	0.47572	0.00025155	0.28057	0.00014836	528.7719210333066	69.968	0.504	69.968	69.681	70.185	0					17	9	3	0	0	0	0.73946	1	25455	25455		23.148	1.6114	1	1000700	+		22341	20630	16186	16303	21918	21918					0.00321750206330762
IQKTDKESYP	10	Unmodified	_IQKTDKESYP_					0	0	0			REV__nc|ENSG00000183207|Q9Y230-2|RUVBL2	REV__nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	A375_MHC_IP_R1	1	403.9434509277344	3	403.543432	1207.60847	-0.57493	-0.00023201	0.36421	0.00014698	-0.21071	-8.5032E-05	403.5435517402157	33	0.40473	33	32.785	33.19	0					18	7	3	0	0	0	0.70793	1	10723	10723		5.0475	0.3316	1	6333800	+		22342	21739	16187	16304	21919	21919					0.012967720896767787
IQKTIKKQVVL	11	Unmodified	_IQKTIKKQVVL_					0	0	0		nc|ENSG00000135218|P16671-2|CD36;nc|ENSG00000135218|P16671-4|CD36;nc|ENSG00000135218|P16671-3|CD36;ENSG00000135218|ENST00000447544|CD36	nc|ENSG00000135218|P16671-2|CD36	nc|ENSG00000135218|P16671-2|CD36	MSMS	A375_MHC_IP_R2	2	433.18719482421875	3	433.290379	1296.84931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.045	1	18.648	18.148	19.148	0.60308								0	0	0	0.16358	1	5345	5345		0.094841	0	1				22343	4655	16188	16305	21920	21920					0.2127563286755958
IQKTRRKMIL	10	Unmodified	_IQKTRRKMIL_					0	0	0		nc|ENSG00000156920|Q8IZF6-2|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4;ENSG00000156920|ENST00000394143|ADGRG4	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	MULTI-MSMS	A375_MHC_IP_R2	2	429.673095703125	3	429.607825	1285.80165	-0.05875	-2.524E-05	-0.97092	-0.00041712	-1.0297	-0.00044235	429.6073284325701	136.05	0.30624	136.16	135.99	136.3	0.11134					8	5	2	0	0	0	0.72712	1	53477	53477		0.15932	0	1	1375200			22344	6216	16189	16306	21921	21921					0.17017655395716247
IQLALRKVSHY	11	Unmodified	_IQLALRKVSHY_					0	0	0		FBXO24|p.V287I|1|0.69|ENSG00000106336|chr7:100594448-100594448|G/A|missense_variant	FBXO24|p.V287I|1|0.69|ENSG00000106336|chr7:100594448-100594448|G/A|missense_variant	FBXO24|p.V287I|1|0.69|ENSG00000106336|chr7:100594448-100594448|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	664.7942504882812	2	664.395879	1326.7772	-0.90217	-0.0005994	-0.82832	-0.00055033	-1.7305	-0.0011497	664.3950083071481	143.58	0.59238	143.58	143.24	143.84	0					17	11	2	0	0	0	0.7359	1	55092	55092		3.2813	0.28607	1	804230			22345	13985	16190	16307	21922	21922					0.12688718513823005
IQLDERKEK	9	Unmodified	_IQLDERKEK_					0	0	0			REV__nc|ENSG00000157617|Q9Y426-2|C2CD2	REV__nc|ENSG00000157617|Q9Y426-2|C2CD2	MULTI-SECPEP	A375_MHC_IP_R1	1	580.2296142578125	2	579.827495	1157.64044	-0.02486	-1.4414E-05	3.0026	0.001741	2.9778	0.0017266	579.8293172237645	93.151	0.50998	93.151	92.871	93.381	0					10	9	2	0	0	0	0.59098	1	34260	34260		27.629	2.2295	1	2616500	+		22346	20037	16191	16308	21923	21923					0.06792184563460069
IQLDPLFSQL	10	Unmodified	_IQLDPLFSQL_					0	0	0			REV__nc|ENSG00000182149|P53990-3|IST1	REV__nc|ENSG00000182149|P53990-3|IST1	MULTI-SECPEP	A375_MHC_IP_R2	2	587.7275390625	2	587.329339	1172.64412	-0.62656	-0.000368	-3.5704	-0.002097	-4.197	-0.002465	587.3281400801189	98.03	1.2212	98.79	97.877	99.098	0.75977					29	23	2	0	0	0	0.8125	1	37261	37261		18.146	0	1	1518100	+		22347	27391	16192	16309	21924	21924					0.06470854337317178
IQLQILEARY	10	Unmodified	_IQLQILEARY_					0	0	0		nc|ENSG00000165929|Q8N9U0-2|TC2N;ENSG00000165929|ENST00000435962|TC2N	nc|ENSG00000165929|Q8N9U0-2|TC2N	nc|ENSG00000165929|Q8N9U0-2|TC2N	MULTI-MSMS	A375_MHC_IP_R2	2	416.6430969238281	3	416.243317	1245.70812	-0.26136	-0.00010879	0.016198	6.7421E-06	-0.24516	-0.00010205	416.24327707305997	38.946	0.46183	39.72	39.401	39.863	0.77451					18	8	3	0	0	0	0.67901	1	14367	14367		14.957	0.73899	1	5553400			22348	7006	16193	16310	21925	21925					0.09509634494270358
IQLRWKHHP	9	Unmodified	_IQLRWKHHP_					0	0	0		nc|ENSG00000163873|Q13003-2|GRIK3;ENSG00000163873|ENST00000373091|GRIK3	nc|ENSG00000163873|Q13003-2|GRIK3	nc|ENSG00000163873|Q13003-2|GRIK3	MULTI-SECPEP	A375_MHC_IP_R1	1	608.2483520507812	2	607.848899	1213.68324	-0.28718	-0.00017456	-0.84263	-0.00051219	-1.1298	-0.00068676	607.8483569549907	93.705	0.65762	93.705	93.433	94.09	0					27	12	3	0	0	0	0.67483	1	34436	34436		20.454	5.2051	1	4479100			22349	6737	16194	16311	21926	21926					0.08495044202209101
IQMKETVEEQ	10	Unmodified	_IQMKETVEEQ_					0	0	0		nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000139842|Q13619-2|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	MULTI-MSMS	A375_MHC_IP_R1	1	618.2028198242188	2	617.802828	1233.5911	-0.44122	-0.00027259	-1.8383	-0.0011357	-2.2795	-0.0014083	617.8019307996261	129.12	1.3227	129.12	128.63	129.95	0					39	25	3	0	0	0	0.67512	1	49611	49611		15.248	0	1	18940000			22350	5114	16195	16312	21927	21927					-0.016348915076378034
IQNEEFSF	8	Unmodified	_IQNEEFSF_					0	0	0			REV__ENSG00000176182|ENST00000322217|MYPOP	REV__ENSG00000176182|ENST00000322217|MYPOP	MULTI-MSMS	A375_MHC_IP_R1	1	507.2183837890625	2	507.232364	1012.45018	-0.41362	-0.0002098	0.0062574	3.174E-06	-0.40736	-0.00020663	507.23230465001484	77.411	1.3241	77.411	76.622	77.946	0					58	25	3	0	0	0	0.73946	1	28354	28354		23.148	1.4018	1	6863400	+		22351	21391	16196	16313	21928	21928					-0.05555102098742282
IQNKNEINY	9	Unmodified	_IQNKNEINY_					0	0	0		SELP|p.D77N|1|0.23|ENSG00000174175|chr1:169617280-169617280|C/T|missense_variant	SELP|p.D77N|1|0.23|ENSG00000174175|chr1:169617280-169617280|C/T|missense_variant	SELP|p.D77N|1|0.23|ENSG00000174175|chr1:169617280-169617280|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	568.2112426757812	2	568.290745	1134.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.819	1	96.819	96.319	97.319	0								0	0	0	0.15069	1	35578	35578		20.454	0.039092	1				22352	29130	16197	16314	21929	21929					0.005036361209931783
IQNRRWQR	8	Unmodified	_IQNRRWQR_					0	0	0		ENSG00000188050|ENST00000340112|RNF133	ENSG00000188050|ENST00000340112|RNF133	ENSG00000188050|ENST00000340112|RNF133	MULTI-SECPEP	A375_MHC_IP_R2	2	578.9556884765625	2	578.825955	1155.63736	-0.24179	-0.00013995	-3.5012	-0.0020266	-3.743	-0.0021665	579.8285851710772	102.95	0.55906	103.72	103.43	103.99	0.76428					23	10	4	0	0	0	0.972	1	39045	39045		13.508	2.684	1	1788500			22353	8878	16198	16315	21930	21930					0.06576399019968449
IQPEMHENY	9	Unmodified	_IQPEMHENY_					0	0	0		ENST00000442568.2_1_9:139674553-139674667:+|nuORF	ENST00000442568.2_1_9:139674553-139674667:+|nuORF	ENST00000442568.2_1_9:139674553-139674667:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	580.6524658203125	2	580.755681	1159.49681	-0.18399	-0.00010685	-2.3025	-0.0013372	-2.4864	-0.001444	581.2553981209118	103.99	0.4574	103.99	103.68	104.13	0					11	8	2	0	0	0	0.73363	1	38199	38199		15.847	11.091	1	1639500			22354	11994	16199	16316	21931	21931					-0.07655985539122412
IQPFNWLFRWE	11	Unmodified	_IQPFNWLFRWE_					0	0	0			REV__ENSG00000215262|ENST00000399881|KCNU1	REV__ENSG00000215262|ENST00000399881|KCNU1	MSMS	A375_MHC_IP_R1	1	768.3131713867188	2	768.393336	1534.77212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.254	1	92.254	91.754	92.754	0								0	0	0	0.16302	1	33902	33902		2.9952	0	1		+		22355	22673	16200	16317	21932	21932					0.026124146511847357
IQPGYMMQFK	10	Unmodified	_IQPGYMMQFK_					0	0	0		nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	nc|ENSG00000189056|P78509-3|RELN	nc|ENSG00000189056|P78509-3|RELN	MULTI-SECPEP	A375_MHC_IP_R2	2	414.97039794921875	3	414.871838	1241.59369	-0.17438	-7.2344E-05	-1.9286	-0.00080013	-2.103	-0.00087247	414.87193737056924	40.703	0.50905	41.477	41.285	41.794	0.77451					17	9	4	0	0	0	0.93961	1	15060	15060		1.5923	0.39894	1	1224900			22356	8956	16201	16318	21933	21933					-0.017447145836968048
IQPRRRWWWLQ	11	Unmodified	_IQPRRRWWWLQ_					0	0	0		ENST00000591247.5_1_17:42113394-42113565:-|nuORF;LSM12|p.V173Gfs*85|1|0.36|ENSG00000161654|chr17:44036278-44036278|A/-|frameshift_variant	ENST00000591247.5_1_17:42113394-42113565:-|nuORF	ENST00000591247.5_1_17:42113394-42113565:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	813.351806640625	2	812.952218	1623.88988	-0.69102	-0.00056176	0.69255	0.00056301	0.0015333	1.2465E-06	812.9524052576093	136.23	0.30649	136.23	136	136.3	0					12	5	3	0	0	0	0.73902	1	52485	52485		0.30703	0	1	2875800			22357	13793	16202	16319	21934	21934					0.10289412030556377
IQPRRRWWWLQ	11	Unmodified	_IQPRRRWWWLQ_					0	0	0		ENST00000591247.5_1_17:42113394-42113565:-|nuORF;LSM12|p.V173Gfs*85|1|0.36|ENSG00000161654|chr17:44036278-44036278|A/-|frameshift_variant	ENST00000591247.5_1_17:42113394-42113565:-|nuORF	ENST00000591247.5_1_17:42113394-42113565:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	813.35205078125	2	812.952218	1623.88988	-0.70495	-0.00057309	0.49983	0.00040634	-0.20512	-0.00016675	812.9525610568295	136.15	0.3056	136.26	136.04	136.35	0.11133					9	5	2	0	0	0	0.73934	1	53507	53507		0	0	1	2164500			22358	13793	16202	16319	21935	21935					0.10289412030556377
IQQFGRTHRS	10	Unmodified	_IQQFGRTHRS_					0	0	0		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;SBNO2|p.L973Wfs*76|1|0.29|ENSG00000064932|chr19:1110856-1110856|G/-|frameshift_variant	nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000064932|Q9Y2G9-3|SBNO2	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	MSMS	A375_MHC_IP_R2	2	615.073974609375	2	615.328528	1228.6425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.97	1	103.74	103.24	104.24	0.76428								0	0	0	0.15332	1	39005	39005		10.074	1.3285	1				22359	5103;1363	16203	16320	21936	21936					0.03732658091939811
IQQLKQKI	8	Unmodified	_IQQLKQKI_					0	0	0		nc|ENSG00000089177|Q96L93-6|KIF16B;nc|ENSG00000089177|Q96L93-4|KIF16B;ENSG00000089177|ENST00000354981|KIF16B;nc|ENSG00000089177|Q96L93-2|KIF16B;nc|ENSG00000089177|Q96L93-5|KIF16B	nc|ENSG00000089177|Q96L93-6|KIF16B	nc|ENSG00000089177|Q96L93-6|KIF16B	MULTI-SECPEP	A375_MHC_IP_R2	2	500.2210693359375	2	499.821484	997.628415	-0.97113	-0.00048539	-0.08716	-4.3565E-05	-1.0583	-0.00052896	499.8213797476887	59.224	0.8099	59.971	59.691	60.501	0.74714					27	15	3	0	0	0	0.77651	1	22392	22392		34.102	1.797	1	10972000			22360	1919	16204	16321	21937	21937					0.12950612610927692
IQRAGRFRVEN	11	Unmodified	_IQRAGRFRVEN_					0	0	0		nc|ENSG00000136895|Q5VVW2-3|GARNL3;nc|ENSG00000136895|Q5VVW2-2|GARNL3;nc|ENSG00000136895|Q5VVW2-5|GARNL3;ENSG00000136895|ENST00000373387|GARNL3	nc|ENSG00000136895|Q5VVW2-3|GARNL3	nc|ENSG00000136895|Q5VVW2-3|GARNL3	MSMS	A375_MHC_IP_R1	1	673.7322998046875	2	673.376009	1344.73747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.05	1	117.05	116.55	117.55	0								0	0	0	0.16112	1	42953	42953		12.873	1.3779	1				22361	4839	16205	16322	21938	21938					0.07888591563119007
IQRIPRRRIKW	11	Unmodified	_IQRIPRRRIKW_					0	0	0		ENST00000371079.5_1_1:64608291-64624714:+|nuORF	ENST00000371079.5_1_1:64608291-64624714:+|nuORF	ENST00000371079.5_1_1:64608291-64624714:+|nuORF	MSMS	A375_MHC_IP_R2	2	761.4321899414062	2	761.483686	1520.95282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.15	1	126.44	125.94	126.94	0.2951								0	0	0	0.1636	1	49329	49329		0	0	1				22362	11164	16206	16323	21939	21939					0.21317977818557665
IQRRSVVCL	9	Unmodified	_IQRRSVVCL_					0	0	0		ENSG00000143382|ENST00000271643|ADAMTSL4;nc|ENSG00000143382|Q6UY14-3|ADAMTSL4;ENST00000489159.1_1_1:150530894-150532669:+|nuORF	ENSG00000143382|ENST00000271643|ADAMTSL4	ENSG00000143382|ENST00000271643|ADAMTSL4	MULTI-SECPEP	A375_MHC_IP_R2	2	1072.9345703125	1	1073.62481	1072.61753	0.2459	0.000264	-0.57129	-0.00061335	-0.32539	-0.00034935	1073.6256421549374	116.26	1.9848	116.92	115.49	117.48	0.65962					54	38	2	0	0	0	0.78348	1	43929	43929		1.8442	0	1	46253000			22363	5380	16207	16324	21940	21940					0.0841288696499305
IQRTPKIQVY	10	Unmodified	_IQRTPKIQVY_					0	0	0		ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-MSMS	A375_MHC_IP_R1	1	416.3152770996094	3	415.915312	1244.72411	-0.052069	-2.1656E-05	-0.1531	-6.3678E-05	-0.20517	-8.5334E-05	415.91520203195034	26.483	0.5072	26.483	26.271	26.779	0					22	9	3	0	0	0	0.63639	1	7917	7917		15.739	6.4948	1	3961400			22364	7105	16208	16325	21941	21941					0.11153340731175376
IQRTPKIQVY	10	Unmodified	_IQRTPKIQVY_					0	0	0		ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-MSMS	A375_MHC_IP_R1	1	416.3150939941406	3	415.915312	1244.72411	0.14377	5.9796E-05	-0.03383	-1.407E-05	0.10994	4.5725E-05	415.91539250865475	36.969	2.2899	36.969	36.592	38.882	0					114	44	6	0	0	0	0.064809	2	12341	12341;12578		62.78	25.009	1	574660000			22365	7105	16208	16325	21942;21943	21942					0.11153340731175376
IQRTPKIQVY	10	Unmodified	_IQRTPKIQVY_					0	0	0		ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-MSMS	A375_MHC_IP_R1	1	623.7691650390625	2	623.36933	1244.72411	-0.62593	-0.00039018	0.41504	0.00025872	-0.21089	-0.00013146	623.3695440711198	36.969	0.65701	36.969	36.644	37.301	0					40	12	4	0	0	0	0.011634	1	12366	12366		115.06	57.81	1	49286000			22366	7105	16208	16325	21944	21944					0.11153340731175376
IQRTPKIQVY	10	Unmodified	_IQRTPKIQVY_					0	0	0		ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-SECPEP	A375_MHC_IP_R1	1	416.43060302734375	3	415.915312	1244.72411	0.65546	0.00027262	0.16018	6.6619E-05	0.81564	0.00033924	416.2503103271528	39.039	0.30505	39.039	38.882	39.187	0					7	5	2	0	0	0	0.91516	1	13275	13275		13.519	5.0744	1	1257500			22367	7105	16208	16325	21945	21945					0.11153340731175376
IQRTPKIQVY	10	Unmodified	_IQRTPKIQVY_					0	0	0		ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-MSMS	A375_MHC_IP_R2	2	416.315185546875	3	415.915312	1244.72411	-0.15908	-6.6162E-05	-0.21113	-8.7814E-05	-0.37021	-0.00015398	415.9153006885039	36.053	1.7804	36.817	36.435	38.215	0.76338					112	34	6	0	0	0	0.091534	4	13027	13027;13272;13330;13505		57.204	24.306	1	796980000			22368	7105	16208	16325	21946;21947;21948;21949	21946					0.11153340731175376
IQRTPKIQVY	10	Unmodified	_IQRTPKIQVY_					0	0	0		ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-MSMS	A375_MHC_IP_R2	2	623.7691040039062	2	623.36933	1244.72411	-0.89243	-0.00055631	0.26302	0.00016396	-0.62941	-0.00039235	623.3694445484216	36.053	0.7135	36.817	36.486	37.2	0.76338					42	13	5	0	0	0	0.004656	1	13053	13053		135.72	61.519	1	68577000			22369	7105	16208	16325	21950	21950					0.11153340731175376
IQRTPKIQVY	10	Unmodified	_IQRTPKIQVY_					0	0	0		ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	415.915312	1244.72411	-0.46869	-0.00019493	0.19365	8.0544E-05	-0.27503	-0.00011439	415.9152863009847	25.667	0.91351	26.327	26.044	26.957	0.65992	-0.077722	0.00019008	NaN	15.739	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2660400			22370	7105	16208	16325							0.11153340731175376
IQRTPKIQVYS	11	Unmodified	_IQRTPKIQVYS_					0	0	0		ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-MSMS	A375_MHC_IP_R1	1	445.3259582519531	3	444.925988	1331.75613	-0.10597	-4.715E-05	0.13522	6.0163E-05	0.029247	1.3013E-05	444.9260822306388	34.272	0.75902	34.272	33.898	34.657	0					44	14	4	0	0	0	0.35036	2	11240	11222;11240		42.862	15.733	1	86166000			22371	7105	16209	16326	21951;21952	21952					0.10352708414325207
IQRTPKIQVYS	11	Unmodified	_IQRTPKIQVYS_					0	0	0		ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-MSMS	A375_MHC_IP_R1	1	667.2855834960938	2	666.885344	1331.75613	-0.62374	-0.00041597	0.28235	0.00018829	-0.34139	-0.00022767	666.885570796996	34.273	0.45542	34.273	34.052	34.507	0					20	8	3	0	0	0	0.17687	1	11267	11267		66.55	16.808	1	6886900			22372	7105	16209	16326	21953	21953					0.10352708414325207
IQRTPKIQVYS	11	Unmodified	_IQRTPKIQVYS_					0	0	0		ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-MSMS	A375_MHC_IP_R2	2	445.3260803222656	3	444.925988	1331.75613	-0.80671	-0.00035893	0.22954	0.00010213	-0.57717	-0.0002568	444.9261302931773	33.52	0.91384	34.272	33.789	34.702	0.75225					53	17	5	0	0	0	0.18032	1	11972	11972		56.328	16.915	1	88154000			22373	7105	16209	16326	21954	21954					0.10352708414325207
IQRTPKIQVYS	11	Unmodified	_IQRTPKIQVYS_					0	0	0		ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-MSMS	A375_MHC_IP_R2	2	667.2846069335938	2	666.885344	1331.75613	-1.2293	-0.00081979	0.29946	0.00019971	-0.92982	-0.00062008	666.8854273104706	33.515	0.50803	34.267	33.942	34.45	0.75225					20	9	3	0	0	0	0.25012	1	12004	12004		66.55	11.301	1	8067700			22374	7105	16209	16326	21955	21955					0.10352708414325207
IQRVAGTTYFG	11	Unmodified	_IQRVAGTTYFG_					0	0	0			REV__ENST00000476160.1_1_X:103041108-103041682:+|nuORF	REV__ENST00000476160.1_1_X:103041108-103041682:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	607.2218017578125	2	606.822212	1211.62987	-0.29842	-0.00018109	-0.45452	-0.00027581	-0.75294	-0.0004569	606.8218614555285	57.338	0.50949	57.338	57.059	57.568	0					12	9	2	0	0	0	0.9836	1	20602	20602		11.495	0	1	2510500	+		22375	25180	16210	16327	21956	21956					0.03252201909026553
IQRVGVIKVCL	11	Unmodified	_IQRVGVIKVCL_					0	0	0			REV__ENST00000507072.5_1_5:177378439-177384631:+|nuORF	REV__ENST00000507072.5_1_5:177378439-177384631:+|nuORF	MSMS	A375_MHC_IP_R1	1	409.9906311035156	3	409.925043	1226.7533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.109	1	29.109	28.609	29.609	0								0	0	0	0.16161	1	9063	9063		10.315	0	1		+		22376	25502	16211	16328	21957	21957					0.14899161755829482
IQRVRAQERE	10	Unmodified	_IQRVRAQERE_					0	0	0		nc|ENSG00000170486|Q14CN4-3|KRT72;nc|ENSG00000170486|Q14CN4-2|KRT72;ENSG00000170486|ENST00000293745|KRT72;CON__Q14CN4-1	nc|ENSG00000170486|Q14CN4-3|KRT72	nc|ENSG00000170486|Q14CN4-3|KRT72	MULTI-SECPEP	A375_MHC_IP_R1	1	429.63238525390625	3	428.90922	1283.70583	-0.25897	-0.00011107	2.2127	0.00094905	1.9537	0.00083798	428.91057575595073	27.659	0.15068	27.659	27.533	27.684	0					4	2	2	0	0	0	0.94707	1	8392	8392		3.3196	1.99	1	1095900		+	22377	604	16212	16329	21958	21958					0.0753259880918904
IQRVRAQERE	10	Unmodified	_IQRVRAQERE_					0	0	0		nc|ENSG00000170486|Q14CN4-3|KRT72;nc|ENSG00000170486|Q14CN4-2|KRT72;ENSG00000170486|ENST00000293745|KRT72;CON__Q14CN4-1	nc|ENSG00000170486|Q14CN4-3|KRT72	nc|ENSG00000170486|Q14CN4-3|KRT72	MULTI-MATCH	A375_MHC_IP_R2	2		3	428.90922	1283.70583	-0.40645	-0.00017433	3.4679	0.0014874	3.0615	0.0013131	428.9106915347694	26.934	0.1539	27.594	27.466	27.62	0.65992	-0.032463	0.00036891	NaN	3.3196	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	988550		+	22378	604	16212	16329							0.0753259880918904
IQRYQYETCFL	11	Unmodified	_IQRYQYETCFL_					0	0	0			REV__ENST00000483684.1_1_10:22606823-22607748:+|nuORF	REV__ENST00000483684.1_1_10:22606823-22607748:+|nuORF	MSMS	A375_MHC_IP_R1	1	488.4694519042969	3	488.571105	1462.69149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.569	1	45.569	45.069	46.069	0								0	0	0	0.16334	1	15952	15952		1.3296	0	1		+		22379	25292	16213	16330	21959	21959					-0.021352344539991464
IQSDVWSF	8	Unmodified	_IQSDVWSF_					0	0	0		ENSG00000128052|ENST00000263923|KDR	ENSG00000128052|ENST00000263923|KDR	ENSG00000128052|ENST00000263923|KDR	MULTI-SECPEP	A375_MHC_IP_R1	1	491.12457275390625	2	491.23745	980.460347	-0.47952	-0.00023556	-1.484	-0.00072901	-1.9635	-0.00096456	491.2368199942173	32.282	0.45721	32.282	32.127	32.585	0					12	8	2	0	0	0	0.94479	1	10449	10449		13.508	0	1	637580			22380	4121	16214	16331	21960	21960					-0.030664943735246197
IQSETTVTV	9	Unmodified	_IQSETTVTV_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant;HMCN1|p.P2051Lfs*3|1|0.45|ENSG00000143341|chr1:186039851-186039861|CTGTTTCTAGT/-|frameshift_variant;ENST00000485744.5_1_1:185931700-185962449:+|nuORF;nc|ENSG00000143341|Q96RW7-3|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	A375_MHC_IP_R1	1	489.6609802246094	2	489.261122	976.507691	-0.44688	-0.00021864	1.023	0.0005005	0.57608	0.00028185	489.2611654842421	46.85	0.76994	46.85	46.596	47.366	0					28	14	3	0	0	0	0.32092	1	16457	16457		29.082	5.061	1	4270400			22381	5371	16215	16332	21961	21961					0.018497401068202635
IQSETTVTV	9	Unmodified	_IQSETTVTV_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant;HMCN1|p.P2051Lfs*3|1|0.45|ENSG00000143341|chr1:186039851-186039861|CTGTTTCTAGT/-|frameshift_variant;ENST00000485744.5_1_1:185931700-185962449:+|nuORF;nc|ENSG00000143341|Q96RW7-3|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	A375_MHC_IP_R2	2	489.66064453125	2	489.261122	976.507691	-0.48811	-0.00023881	0.38994	0.00019078	-0.098175	-4.8033E-05	489.2610067544782	46.109	0.55578	46.874	46.603	47.159	0.76519					24	10	3	0	0	0	0.06083	1	17269	17269		60.074	10.141	1	3120200			22382	5371	16215	16332	21962	21962					0.018497401068202635
IQSFFVSVYI	10	Unmodified	_IQSFFVSVYI_					0	0	0			REV__tr|U7SNJ2|U7SNJ2_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01733PE=3SV=1	REV__tr|U7SNJ2|U7SNJ2_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01733PE=3SV=1	MSMS	A375_MHC_IP_R1	1	601.7042236328125	2	601.826432	1201.63831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.212	1	93.212	92.712	93.712	0								0	0	0	0.15332	1	34262	34262		10.074	0	1		+		22383	28331	16216	16333	21963	21963					0.04555755825685992
IQSNQNRKK	9	Unmodified	_IQSNQNRKK_					0	0	0			REV__ENSG00000134318|ENST00000315872|ROCK2	REV__ENSG00000134318|ENST00000315872|ROCK2	MSMS	A375_MHC_IP_R1	1	558.463134765625	2	558.317628	1114.6207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.694	1	42.694	42.194	43.194	0								0	0	0	0.1535	1	14806	14806		15.847	1.0089	1		+		22384	18770	16217	16334	21964	21964					0.06797853343368843
IQSPNYPDDY	10	Unmodified	_IQSPNYPDDY_					0	0	0		nc|ENSG00000168487|P13497-4|BMP1;nc|ENSG00000168487|P13497-5|BMP1;nc|ENSG00000168487|P13497-2|BMP1;nc|ENSG00000168487|P13497-6|BMP1;ENSG00000168487|ENST00000306385|BMP1;ENST00000518913.5_1_8:22034120-22058713:+|nuORF;ENST00000354870.5_1_8:22035226-22069238:+|nuORF;ENST00000520982.5_1_8:22034120-22069238:+|nuORF;ENSG00000038295|ENST00000061240|TLL1;ENSG00000095587|ENST00000357947|TLL2	nc|ENSG00000168487|P13497-4|BMP1	nc|ENSG00000168487|P13497-4|BMP1	MSMS	A375_MHC_IP_R2	2	606.2145385742188	2	606.264393	1210.51423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.257	1	84.997	84.497	85.497	0.73962								0	0	0	0.15308	1	32029	32029		10.824	1.4408	1				22385	7309	16218	16335	21965	21965					-0.08260366732474722
IQSTHEPY	8	Unmodified	_IQSTHEPY_					0	0	0			REV__ENST00000307363.9_1_3:33038411-33038540:-|nuORF	REV__ENST00000307363.9_1_3:33038411-33038540:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	488.46917724609375	2	487.732532	973.45051	0.19023	9.2783E-05	-0.35305	-0.00017219	-0.16282	-7.9412E-05	487.73248331269684	45.227	0.50626	45.227	44.878	45.384	0					12	9	2	0	0	0	0.96266	1	15720	15720		11.64	5.8799	1	839290	+		22386	23475	16219	16336	21966	21966					-0.03727682378917052
IQTFSTTMD	9	Unmodified	_IQTFSTTMD_					0	0	0		ENST00000358528.8_1_1:115282408-115282504:-|nuORF	ENST00000358528.8_1_1:115282408-115282504:-|nuORF	ENST00000358528.8_1_1:115282408-115282504:-|nuORF	MSMS	A375_MHC_IP_R1	1	522.1980590820312	2	522.239332	1042.46411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.19	1	41.19	40.69	41.69	0								0	0	0	0.15486	1	14208	14208		11.64	0	1				22387	10997	16220	16337	21967	21967					-0.055421926619601436
IQTRIAGLL	9	Unmodified	_IQTRIAGLL_					0	0	0			REV__ENST00000495186.5_1_X:48386999-48387056:+|nuORF	REV__ENST00000495186.5_1_X:48386999-48387056:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	493.2137756347656	2	492.813659	983.612765	-0.35372	-0.00017432	0.24866	0.00012255	-0.10506	-5.1774E-05	492.8134378066353	100.73	0.77103	101.49	101.19	101.96	0.76278					20	14	2	0	0	0	0.38578	1	38209	38209		27.629	2.2295	1	1406900	+		22388	25444	16221	16338	21968	21968					0.12030326093906751
IQTRSRTRKRV	11	Unmodified	_IQTRSRTRKRV_					0	0	0		ENSG00000100749|ENST00000216639|VRK1	ENSG00000100749|ENST00000216639|VRK1	ENSG00000100749|ENST00000216639|VRK1	MULTI-SECPEP	A375_MHC_IP_R2	2	700.3094482421875	2	700.931483	1399.84841	-0.51965	-0.00036424	0.90165	0.00063199	0.382	0.00026775	700.9321393997556	137.55	0.45827	137.63	137.45	137.91	0.083969					15	8	3	0	0	0	1.0014	1	53995	53995		0.30703	0	1	3412800			22389	2216	16222	16339	21969	21969					0.16448231271215263
IQVIIHVLQ	9	Unmodified	_IQVIIHVLQ_					0	0	0		ENST00000416600.6_1_20:3846990-3847266:+|nuORF	ENST00000416600.6_1_20:3846990-3847266:+|nuORF	ENST00000416600.6_1_20:3846990-3847266:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	532.2371826171875	2	531.837134	1061.65972	-0.56037	-0.00029803	-0.12128	-6.4502E-05	-0.68165	-0.00036253	531.8370607216222	55.661	0.45772	55.661	55.533	55.991	0					21	8	3	0	0	0	0.71541	1	19938	19938		16.942	4.7016	1	4689000			22390	11692	16223	16340	21970	21970					0.1313518564502374
IQVTKVTQV	9	Unmodified	_IQVTKVTQV_					0	0	0		ENSG00000095139|ENST00000264028|ARCN1;nc|ENSG00000095139|P48444-2|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	MULTI-SECPEP	A375_MHC_IP_R1	1	508.71075439453125	2	508.310949	1014.60735	-0.76578	-0.00038926	0.035832	1.8214E-05	-0.72995	-0.00037104	508.31109984430555	41.445	1.2199	41.445	40.66	41.88	0					41	23	4	0	0	0	0.0575	1	14294	14294		86.332	4.4416	1	13969000			22391	2036	16224	16341	21971	21971					0.10062602511425212
IQVTKVTQV	9	Unmodified	_IQVTKVTQV_					0	0	0		ENSG00000095139|ENST00000264028|ARCN1;nc|ENSG00000095139|P48444-2|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	MULTI-SECPEP	A375_MHC_IP_R2	2	508.7109375	2	508.310949	1014.60735	-0.88825	-0.0004515	0.65454	0.00033271	-0.23371	-0.0001188	508.3112822086521	40.637	1.0674	41.412	40.777	41.845	0.77451					33	20	3	0	0	0	0.036647	1	15040	15040		94.909	49.169	1	13784000			22392	2036	16224	16341	21972	21972					0.10062602511425212
IQYEIFRSLMY	11	Unmodified	_IQYEIFRSLMY_					0	0	0		ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	MSMS	A375_MHC_IP_R1	1	731.76953125	2	731.873588	1461.73262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.938	1	82.938	82.438	83.438	0								0	0	0	0.16191	1	30339	30339		8.7454	2.5396	1				22393	9655	16225	16342	21973	21973					0.02022526585506057
IQYNNLNLKT	10	Unmodified	_IQYNNLNLKT_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1;ENST00000555252.5_1_14:64855058-64907131:+|nuORF;ENST00000413059.1_1_X:57420873-57421110:-|nuORF	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MULTI-SECPEP	A375_MHC_IP_R1	1	407.14990234375	3	407.559305	1219.65609	-0.49152	-0.00020032	3.7958	0.001547	3.3043	0.0013467	407.8968148986437	67.11	0.61395	67.11	66.734	67.348	0					19	11	3	0	0	0	0.79457	1	24282	24282		4.1166	0	1	1454800			22394	2212	16226	16343	21974	21974					0.05504471080507756
IQYSAAAIWV	10	Unmodified	_IQYSAAAIWV_					0	0	0			REV__ENST00000543152.5_1_16:19590306-19619547:+|nuORF	REV__ENST00000543152.5_1_16:19590306-19619547:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	374.3842468261719	3	374.537842	1120.5917	0.30246	0.00011328	0.22496	8.4257E-05	0.52742	0.00019754	374.8723839508111	50.533	0.35827	50.533	50.305	50.663	0					10	6	2	0	0	0	0.72061	1	17905	17905		3.0723	0.33707	1	715310	+		22395	25975	16227	16344	21975	21975					0.0362231599435745
IQYTFKQY	8	Unmodified	_IQYTFKQY_					0	0	0			REV__ENST00000316963.7_1_8:54975926-54978367:-|nuORF	REV__ENST00000316963.7_1_8:54975926-54978367:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	545.1661987304688	2	545.782025	1089.5495	-0.70455	-0.00038453	0.89758	0.00048988	0.19303	0.00010535	546.283045804222	25.689	0.30352	25.689	25.613	25.917	0					7	5	2	0	0	0	0.95423	1	7624	7624		18.135	0	1	1553100	+		22396	23540	16228	16345	21976	21976					0.008303405860033308
IRAAWTRAL	9	Unmodified	_IRAAWTRAL_					0	0	0		ENSG00000116962|ENST00000264187|NID1;nc|ENSG00000116962|P14543-2|NID1	ENSG00000116962|ENST00000264187|NID1	ENSG00000116962|ENST00000264187|NID1	MULTI-MSMS	A375_MHC_IP_R1	1	353.6136474609375	3	353.213692	1056.61925	-0.02187	-7.7246E-06	0.045532	1.6082E-05	0.023662	8.3578E-06	353.2136465277333	47.482	0.707	47.482	47.263	47.97	0					30	13	3	0	0	0	0.14858	1	16714	16714		39.213	24.808	1	9034800			22397	3446	16229	16346	21977	21977					0.09320264045254589
IRAAWTRAL	9	Unmodified	_IRAAWTRAL_					0	0	0		ENSG00000116962|ENST00000264187|NID1;nc|ENSG00000116962|P14543-2|NID1	ENSG00000116962|ENST00000264187|NID1	ENSG00000116962|ENST00000264187|NID1	MULTI-MSMS	A375_MHC_IP_R2	2	353.6135559082031	3	353.213692	1056.61925	-0.092177	-3.2558E-05	-0.27937	-9.8678E-05	-0.37155	-0.00013124	353.2135615097588	46.523	0.71098	47.288	47.008	47.719	0.76519					26	13	3	0	0	0	0.030891	1	17396	17396		60.899	41.537	1	11276000			22398	3446	16229	16346	21978	21978					0.09320264045254589
IRADIDKKY	9	Unmodified	_IRADIDKKY_					0	0	0		ENSG00000185896|ENST00000332556|LAMP1;ENST00000472564.1_1_13:113960786-113974926:+|nuORF	ENSG00000185896|ENST00000332556|LAMP1	ENSG00000185896|ENST00000332556|LAMP1	MULTI-MSMS	A375_MHC_IP_R1	1	374.94854736328125	3	374.548629	1120.62406	0.33232	0.00012447	-0.1297	-4.8578E-05	0.20262	7.589E-05	374.54856850834926	19.985	0.71026	19.985	19.674	20.384	0					20	13	2	0	0	0	0.15441	1	5058	5058		41.347	18.572	1	3843000			22399	8702	16230	16347	21979	21979					0.06857103397373976
IRAEPLNSV	9	Unmodified	_IRAEPLNSV_					0	0	0		ENSG00000128534|ENST00000249299|LSM8	ENSG00000128534|ENST00000249299|LSM8	ENSG00000128534|ENST00000249299|LSM8	MULTI-SECPEP	A375_MHC_IP_R1	1	500.1849060058594	2	499.785099	997.555644	-0.62754	-0.00031364	0.51646	0.00025812	-0.11109	-5.5519E-05	499.7854494704733	41.184	0.50633	41.184	40.913	41.419	0					20	8	3	0	0	0	0.053555	1	14228	14228		90.135	23.678	1	5301400			22400	4143	16231	16348	21980	21980					0.05676858817525954
IRAEPLNSV	9	Unmodified	_IRAEPLNSV_					0	0	0		ENSG00000128534|ENST00000249299|LSM8	ENSG00000128534|ENST00000249299|LSM8	ENSG00000128534|ENST00000249299|LSM8	MULTI-SECPEP	A375_MHC_IP_R2	2	500.1849670410156	2	499.785099	997.555644	-0.62468	-0.00031221	0.17362	8.6773E-05	-0.45106	-0.00022543	499.7853167693298	40.358	0.50642	41.132	40.879	41.386	0.77451					15	8	2	0	0	0	0.0575	1	14940	14940		86.332	19.875	1	5716900			22401	4143	16231	16348	21981	21981					0.05676858817525954
IRCFSTHRL	9	Unmodified	_IRCFSTHRL_					0	0	0		ENST00000574149.6_1_17:19314736-19316565:+|nuORF;ENSG00000128482|ENST00000461366|RNF112;nc|ENSG00000128482|Q9ULX5-2|RNF112	ENST00000574149.6_1_17:19314736-19316565:+|nuORF	ENST00000574149.6_1_17:19314736-19316565:+|nuORF	MSMS	A375_MHC_IP_R1	1	378.2648010253906	3	378.20632	1131.59713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.469	1	32.469	31.969	32.969	0								0	0	0	0.15253	1	10493	10493		17.443	2.4855	1				22402	4136	16232	16349	21982	21982					0.036597163051965254
IRCKDYNGE	9	Unmodified	_IRCKDYNGE_					0	0	0		ENST00000538332.2_3_12:10977636-10977681:-|nuORF	ENST00000538332.2_3_12:10977636-10977681:-|nuORF	ENST00000538332.2_3_12:10977636-10977681:-|nuORF	MSMS	A375_MHC_IP_R2	2	366.43621826171875	3	366.506324	1096.49714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.161	1	27.84	27.34	28.34	0.67857								0	0	0	0.15486	1	9248	9248		8.1555	0	1				22403	13257	16233	16350	21983	21983					-0.04724565819265081
IRDMSSITSY	10	Unmodified	_IRDMSSITSY_					0	0	0			REV__ENST00000355697.6_2_10:120923643-120925067:-|nuORF	REV__ENST00000355697.6_2_10:120923643-120925067:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	391.6248779296875	3	391.525384	1171.55432	0.40857	0.00015996	0.086051	3.3691E-05	0.49462	0.00019366	391.52535964982735	92.643	0.45818	92.643	92.413	92.871	0					12	8	2	0	0	0	0.69833	1	34030	34030		11.518	0	1	1551300	+		22404	23824	16234	16351	21984	21984					-0.02459143333544489
IRDNNIFSE	9	Unmodified	_IRDNNIFSE_					0	0	0		nc|ENSG00000283586|P0CG01|GKN3P	nc|ENSG00000283586|P0CG01|GKN3P	nc|ENSG00000283586|P0CG01|GKN3P	MSMS	A375_MHC_IP_R2	2	554.1795043945312	2	554.275095	1106.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.6	1	134.74	134.24	135.24	0.13901								0	0	0	0.15486	1	52946	52946		7.2892	1.0834	1				22405	14943	16235	16352	21985	21985					-0.013369369130941777
IREFLKKVSEE	11	Unmodified	_IREFLKKVSEE_					0	0	0		ENSG00000115548|ENST00000312912|KDM3A;ENST00000491383.5_1_2:86716620-86718467:+|nuORF;ENST00000470160.1_1_2:86716620-86719239:+|nuORF	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	MULTI-SECPEP	A375_MHC_IP_R2	2	688.7855834960938	2	689.390459	1376.76637	-0.63762	-0.00043957	0.94521	0.00065162	0.30759	0.00021205	689.3907756292658	132.28	2.5426	132.47	130.88	133.42	0.18953					84	49	3	0	0	0	0.99581	1	52143	52143		7.1017	2.5729	1	11095000			22406	3321	16236	16353	21986	21986					0.09305271348875976
IREHKKVSL	9	Unmodified	_IREHKKVSL_					0	0	0		tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1	tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1	tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	370.62066650390625	3	370.564502	1108.67168	0.34361	0.00012733	-0.10836	-4.0155E-05	0.23525	8.7176E-05	370.5644129555169	27.799	0.50617	28.477	28.2	28.706	0.67857					23	9	3	0	0	0	0.66474	1	9477	9477		10.151	1.1743	1	17225000			22407	29691	16237	16354	21987	21987					0.12168802388214317
IREISESKSL	10	Unmodified	_IREISESKSL_					0	0	0		ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000218823|ENST00000404991|PAPOLB	MULTI-MSMS	A375_MHC_IP_R2	2	581.7278442382812	2	581.327328	1160.6401	-0.22793	-0.0001325	0.12977	7.5436E-05	-0.098169	-5.7068E-05	581.3275439738234	48.016	0.35125	48.777	48.582	48.933	0.76128					9	6	2	0	0	0	0.66308	1	18050	18050		16.149	0	1	1877600			22408	9658	16238	16355	21988	21988					0.06620764843637517
IREREQTQY	9	Unmodified	_IREREQTQY_					0	0	0			REV__ENST00000524307.5_1_8:124089445-124141439:+|nuORF	REV__ENST00000524307.5_1_8:124089445-124141439:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	407.6506652832031	3	408.210676	1221.6102	-0.0069865	-2.852E-06	-0.59948	-0.00024471	-0.60646	-0.00024756	408.5448961210542	32.271	0.30557	33.008	32.806	33.112	0.73691					7	5	2	0	0	0	0.79535	1	11447	11447		1.9064	0.71303	1	1070000	+		22409	19996	16239	16356	21989	21989					0.008258258982777988
IRESEIIDF	9	Unmodified	_IRESEIIDF_					0	0	0		ENST00000488906.1_1_17:45236795-45237245:-|nuORF	ENST00000488906.1_1_17:45236795-45237245:-|nuORF	ENST00000488906.1_1_17:45236795-45237245:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	374.9326171875	3	374.532756	1120.57644	0.37053	0.00013877	-0.025529	-9.5615E-06	0.345	0.00012921	374.53263867460583	34.835	0.86412	34.835	34.608	35.472	0					33	16	3	0	0	0	0.58047	1	11536	11536		10.8	0	1	19163000			22410	12627	16240	16357	21990	21990					0.020974044065042108
IRFDNKRIV	9	Unmodified	_IRFDNKRIV_					0	0	0		nc|ENSG00000072803|Q9UKB1-3|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC	nc|ENSG00000072803|Q9UKB1-3|FBXW11	nc|ENSG00000072803|Q9UKB1-3|FBXW11	MULTI-MSMS	A375_MHC_IP_R1	1	387.9681701660156	3	387.568135	1159.68258	0.2653	0.00010282	-0.20337	-7.8821E-05	0.061929	2.4002E-05	387.56802828025724	33.573	0.5055	33.573	33.342	33.848	0					26	9	4	0	0	0	0.030222	1	10959	10959		74.772	44.068	1	15972000			22411	1548	16241	16358	21991	21991					0.10912204762485089
IRFDNKRIV	9	Unmodified	_IRFDNKRIV_					0	0	0		nc|ENSG00000072803|Q9UKB1-3|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC	nc|ENSG00000072803|Q9UKB1-3|FBXW11	nc|ENSG00000072803|Q9UKB1-3|FBXW11	MULTI-MSMS	A375_MHC_IP_R2	2	387.9678649902344	3	387.568135	1159.68258	-0.19657	-7.6184E-05	0.093105	3.6084E-05	-0.10346	-4.0099E-05	387.56811362560563	32.637	0.4068	33.374	33.162	33.569	0.73691					19	7	3	0	0	0	0.15441	1	11630	11630		41.347	19.757	1	13691000			22412	1548	16241	16358	21992	21992					0.10912204762485089
IRFFDSGFWQG	11	Unmodified	_IRFFDSGFWQG_					0	0	0			REV__ENST00000309993.2_1_3:135913869-135914463:-|nuORF	REV__ENST00000309993.2_1_3:135913869-135914463:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	454.28765869140625	3	453.887533	1358.64077	-0.36617	-0.0001662	0.34497	0.00015658	-0.021199	-9.6218E-06	453.8879283472541	50.649	0.81043	51.403	50.904	51.715	0.75406					34	15	3	0	0	0	0.73135	1	19021	19021		3.8459	2.7362	1	3678600	+		22413	23495	16242	16359	21993	21993					-0.024203957166946566
IRFKHLFWWWF	11	Unmodified	_IRFKHLFWWWF_					0	0	0			REV__nc|ENSG00000166262|Q96M60-2|FAM227B	REV__nc|ENSG00000166262|Q96M60-2|FAM227B	MSMS	A375_MHC_IP_R1	1	556.0325317382812	3	555.96623	1664.87686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.022	1	57.022	56.522	57.522	0								0	0	0	0.1636	1	20441	20441		0	0	1		+		22414	27333	16243	16360	21994	21994					0.07101580918424588
IRFKHLFWWWF	11	Unmodified	_IRFKHLFWWWF_					0	0	0			REV__nc|ENSG00000166262|Q96M60-2|FAM227B	REV__nc|ENSG00000166262|Q96M60-2|FAM227B	MSMS	A375_MHC_IP_R1	1	833.41552734375	2	833.445706	1664.87686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.33	1	128.33	127.83	128.83	0								0	0	0	0.1636	1	49275	49275		0	0	1		+		22415	27333	16243	16360	21995	21995					0.07101580918424588
IRFKIQRL	8	Unmodified	_IRFKIQRL_					0	0	0		ENSG00000177051|ENST00000317683|FBXO46	ENSG00000177051|ENST00000317683|FBXO46	ENSG00000177051|ENST00000317683|FBXO46	MULTI-SECPEP	A375_MHC_IP_R1	1	358.96917724609375	3	358.569588	1072.68693	0.11092	3.9771E-05	-0.56894	-0.000204	-0.45802	-0.00016423	358.5692242351151	42.13	0.40424	42.13	41.932	42.336	0					13	7	2	0	0	0	0.68831	1	14612	14612		49.933	9.9833	1	2169200			22416	8059	16244	16361	21996	21996					0.15349713976070234
IRFPDILRV	9	Unmodified	_IRFPDILRV_					0	0	0		ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	MULTI-MSMS	A375_MHC_IP_R1	1	377.30120849609375	3	376.901114	1127.68151	0.35221	0.00013275	-0.0045157	-1.702E-06	0.34769	0.00013105	376.9010599227371	98.836	0.71107	98.836	98.557	99.268	0					32	13	4	0	0	0	0.018166	1	36294	36294		85.764	51.543	1	6812700			22417	7552	16245	16362	21997	21997					0.12277990393590699
IRFPDILRV	9	Unmodified	_IRFPDILRV_					0	0	0		ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	MULTI-MSMS	A375_MHC_IP_R2	2	377.6355895996094	3	376.901114	1127.68151	0.13089	4.9332E-05	0.23875	8.9986E-05	0.36964	0.00013932	376.90113629719934	97.865	0.71053	98.621	98.281	98.992	0.75586					33	13	3	0	0	0	0.048392	1	37111	37111		64.927	40.045	1	5967400			22418	7552	16245	16362	21998	21998					0.12277990393590699
IRFSSETWQNL	11	Unmodified	_IRFSSETWQNL_					0	0	0		ENST00000473912.1_1_3:52005470-52008081:-|nuORF;ENST00000488257.2_1_3:51995958-52008006:-|nuORF;ENSG00000114779|ENST00000361143|ABHD14B	ENST00000473912.1_1_3:52005470-52008081:-|nuORF	ENST00000473912.1_1_3:52005470-52008081:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	461.3014221191406	3	460.901731	1379.68336	-0.13379	-6.1663E-05	-0.010319	-4.756E-06	-0.14411	-6.6419E-05	460.90170895926235	45.966	0.40601	45.966	45.789	46.195	0					12	7	2	0	0	0	0.7353	1	16162	16162		3.8459	1.5932	1	2776400			22419	3245	16246	16363	21999	21999					0.008709546209274777
IRGGIVSQV	9	Unmodified	_IRGGIVSQV_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-SECPEP	A375_MHC_IP_R1	1	465.18231201171875	2	464.782359	927.550165	-0.16589	-7.7103E-05	-0.20748	-9.6431E-05	-0.37337	-0.00017353	464.78221229165416	40.376	0.86296	40.376	40.1	40.963	0					31	16	3	0	0	0	0.056023	1	13842	13842		85.642	24.284	1	25222000			22420	4297	16247	16364	22000	22000					0.08349180025709302
IRGGIVSQV	9	Unmodified	_IRGGIVSQV_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-SECPEP	A375_MHC_IP_R2	2	465.18194580078125	2	464.782359	927.550165	-0.66881	-0.00031085	0.22294	0.00010362	-0.44587	-0.00020723	464.7823955086628	39.505	0.60942	40.28	40.016	40.626	0.77451					33	11	4	0	0	0	0.025235	1	14561	14561		107.19	42.951	1	26913000			22421	4297	16247	16364	22001	22001					0.08349180025709302
IRGIKRSKY	9	Unmodified	_IRGIKRSKY_					0	0	0			REV__nc|ENSG00000107331|Q9BZC7|ABCA2	REV__nc|ENSG00000107331|Q9BZC7|ABCA2	MULTI-MSMS	A375_MHC_IP_R1	1	561.322509765625	2	560.851107	1119.68766	-0.34206	-0.00019185	-1.5087	-0.00084614	-1.8507	-0.001038	560.8523605802982	88.751	0.25359	88.751	88.561	88.815	0					8	4	3	0	0	0	0.72985	1	32515	32515		4.3292	0.38484	1	1022600	+		22422	17482	16248	16365	22002	22002					0.13260508625126022
IRGMRRFRWVH	11	Unmodified	_IRGMRRFRWVH_					0	0	0			REV__ENSG00000009335|ENST00000348165|UBE3C	REV__ENSG00000009335|ENST00000348165|UBE3C	MULTI-SECPEP	A375_MHC_IP_R1	1	505.7065734863281	3	505.285968	1512.83607	-0.72657	-0.00036713	0.18117	9.154E-05	-0.54541	-0.00027559	505.28590775614083	149.1	0.90804	149.1	148.56	149.46	0					35	17	3	0	0	0	1.0015	1	56893	56893		0	0	1	117580	+		22423	16183	16249	16366	22003	22003					0.10016916327163017
IRGPVTIV	8	Unmodified	_IRGPVTIV_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	A375_MHC_IP_R1	1	428.176513671875	2	427.776545	853.538538	-0.02235	-9.5608E-06	0.02149	9.1929E-06	-0.00085992	-3.6786E-07	427.77649716027815	56.609	0.71251	56.609	56.295	57.007	0					20	13	2	0	0	0	0.69583	1	20258	20258		36.044	5.8194	1	4529200			22424	6988	16250	16367	22004	22004					0.10590983002384746
IRGRILGY	8	Unmodified	_IRGRILGY_					0	0	0			REV__ENSG00000148950|ENST00000532287|IMMP1L	REV__ENSG00000148950|ENST00000532287|IMMP1L	MULTI-MSMS	A375_MHC_IP_R1	1	474.6929016113281	2	474.292894	946.571235	-0.83123	-0.00039425	0.096796	4.591E-05	-0.73444	-0.00034834	474.2929772717297	30.024	0.4026	30.024	29.798	30.2	0					10	7	2	0	0	0	0.77624	1	9526	9526		8.5933	0.68312	1	4268900	+		22425	19653	16251	16368	22005	22005					0.09581190125220473
IRGSKIRFL	9	Unmodified	_IRGSKIRFL_					0	0	0		nc|ENSG00000286070|P62318-2|SNRPD3;ENSG00000100028|ENST00000215829|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	MULTI-MSMS	A375_MHC_IP_R1	1	364.92572021484375	3	363.901226	1088.68185	0.36133	0.00013149	-0.097046	-3.5315E-05	0.26429	9.6174E-05	363.90114613698694	38.701	0.96886	38.701	38.371	39.34	0					46	18	4	0	0	0	0.050868	2	13152	13152;13218		63.961	22.121	1	61184000			22426	2103	16252	16369	22006;22007	22006					0.14105410113461403
IRGSKIRFL	9	Unmodified	_IRGSKIRFL_					0	0	0		nc|ENSG00000286070|P62318-2|SNRPD3;ENSG00000100028|ENST00000215829|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	MULTI-MSMS	A375_MHC_IP_R2	2	364.6048889160156	3	363.901226	1088.68185	-0.40219	-0.00014636	0.060314	2.1948E-05	-0.34187	-0.00012441	363.90123566868476	37.463	1.1263	38.234	37.968	39.095	0.7709					51	21	5	0	0	0	0.019126	2	13740	13671;13740		84.522	12.6	1	66801000			22427	2103	16252	16369	22008;22009	22009					0.14105410113461403
IRGTKEELL	9	Unmodified	_IRGTKEELL_					0	0	0			REV__ENST00000396625.3_1_2:228012214-228028792:-|nuORF	REV__ENST00000396625.3_1_2:228012214-228028792:-|nuORF	MSMS	A375_MHC_IP_R2	2	353.9448547363281	3	353.544996	1057.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.637	1	45.406	44.906	45.906	0.7691								0	0	0	0.15069	1	16666	16666		19.362	3.2128	1		+		22428	24343	16253	16370	22010	22010					0.0866570102307378
IRGVINQL	8	Unmodified	_IRGVINQL_					0	0	0		nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1;ENSG00000138036|ENST00000260605|DYNC2LI1;nc|ENSG00000138036|Q8TCX1-2|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	MULTI-SECPEP	A375_MHC_IP_R2	2	457.1845397949219	2	456.784902	911.55525	-0.60553	-0.00027659	-0.18459	-8.4318E-05	-0.79012	-0.00036091	456.7848443672564	52.041	0.45803	52.793	52.574	53.032	0.75225					13	8	2	0	0	0	0.25559	1	19617	19617		77.984	33.577	1	2488200			22429	4946	16254	16371	22011	22011					0.09593483888306764
IRIDDLDKIPR	11	Unmodified	_IRIDDLDKIPR_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	A375_MHC_IP_R1	1	677.7951049804688	2	677.396076	1352.7776	-0.87952	-0.00059578	-0.59171	-0.00040082	-1.4712	-0.00099661	677.3955243544059	132.36	6.0136	132.36	131.88	137.9	0					366	117	7	0	0	0	0.73881	1	52829	52829		0	0	1	943820000	+		22430	16332	16255	16372	22012	22012					0.11532093442997393
IRIIPAKKY	9	Unmodified	_IRIIPAKKY_					0	0	0		nc|ENSG00000116133|Q15392-2|DHCR24;ENSG00000116133|ENST00000371269|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	MULTI-MSMS	A375_MHC_IP_R1	1	367.95684814453125	3	367.90961	1100.707	0.23936	8.8061E-05	0.36872	0.00013565	0.60807	0.00022372	367.9096460937838	34.144	0.50637	34.144	33.95	34.456	0					13	9	2	0	0	0	0.60982	1	11177	11177		14.405	5.9611	1	1863800			22431	3373	16256	16373	22013	22013					0.160674649160228
IRIIPAKKY	9	Unmodified	_IRIIPAKKY_					0	0	0		nc|ENSG00000116133|Q15392-2|DHCR24;ENSG00000116133|ENST00000371269|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	MULTI-MSMS	A375_MHC_IP_R2	2	367.9566650390625	3	367.90961	1100.707	-0.050355	-1.8526E-05	-0.17785	-6.5432E-05	-0.2282	-8.3958E-05	367.90956168239245	33.3	0.45835	34.052	33.789	34.247	0.75225					14	8	3	0	0	0	0.44183	2	11905	11826;11905		22.658	13.114	1	2568600			22432	3373	16256	16373	22014;22015	22015					0.160674649160228
IRILTDAR	8	Unmodified	_IRILTDAR_					0	0	0		ENST00000555784.5_1_10:84711227-84745358:+|nuORF;nc|ENSG00000185737|P56975-3|NRG3;ENSG00000185737|ENST00000372141|NRG3;nc|ENSG00000185737|P56975-2|NRG3;nc|ENSG00000185737|P56975|NRG3	ENST00000555784.5_1_10:84711227-84745358:+|nuORF	ENST00000555784.5_1_10:84711227-84745358:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	479.6952819824219	2	479.295633	956.576714	-0.41101	-0.000197	-0.01741	-8.3448E-06	-0.42843	-0.00020534	479.2955502344311	135.68	1.8459	135.8	135.54	137.39	0.12268					100	35	5	0	0	0	0.77797	3	53302	53302;53500;53702		2.3027	0	1	91543000			22433	8690	16257	16374	22016;22017;22018	22016					0.09668868917015061
IRILYLTMFL	10	Unmodified	_IRILYLTMFL_					0	0	0		ENSG00000164073|ENST00000641686|MFSD8;ENST00000505284.5_1_4:128842916-128886288:-|nuORF;ENST00000515130.5_1_4:128842916-128886236:-|nuORF	ENSG00000164073|ENST00000641686|MFSD8	ENSG00000164073|ENST00000641686|MFSD8	MULTI-MSMS	A375_MHC_IP_R1	1	428.65728759765625	3	428.25791	1281.7519	-0.34582	-0.0001481	-0.75181	-0.00032197	-1.0976	-0.00047007	428.25753365355405	129.98	1.0657	129.98	129.3	130.36	0					35	20	2	0	0	0	0.72591	1	49917	49917		0.69767	0.69767	1	18703000			22434	6770	16258	16375	22019	22019					0.12229527667045659
IRILYLTMFL	10	Unmodified	_IRILYLTMFL_					0	0	0		ENSG00000164073|ENST00000641686|MFSD8;ENST00000505284.5_1_4:128842916-128886288:-|nuORF;ENST00000515130.5_1_4:128842916-128886236:-|nuORF	ENSG00000164073|ENST00000641686|MFSD8	ENSG00000164073|ENST00000641686|MFSD8	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	428.25791	1281.7519	-0.22678	-9.7122E-05	-0.91451	-0.00039165	-1.1413	-0.00048877	428.25747819029937	129.81	1.5169	130.03	129.19	130.7	0.21419	0.022462	-8.8964E-05	NaN	0.69767	68	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10623000			22435	6770	16258	16375							0.12229527667045659
IRKDSLRLV	9	Unmodified	_IRKDSLRLV_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-SECPEP	A375_MHC_IP_R2	2	367.63623046875	3	367.236385	1098.68733	0.12702	4.6646E-05	-0.0067638	-2.4839E-06	0.12026	4.4162E-05	367.2363603674569	30.732	0.55415	31.451	31.165	31.719	0.71857					18	10	2	0	0	0	0.4557	1	10810	10810		29.281	0	1	3426100			22436	2398	16259	16376	22020	22020					0.1419308890526736
IRKRLHTLK	9	Unmodified	_IRKRLHTLK_					0	0	0			REV__nc|ENSG00000164542|Q8NCT3|MATCAP2	REV__nc|ENSG00000164542|Q8NCT3|MATCAP2	MSMS	A375_MHC_IP_R1	1	582.8869018554688	2	582.888024	1163.7615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.977	1	84.977	84.477	85.477	0								0	0	0	0.15486	1	31137	31137		2.9952	0.93549	1		+		22437	27326	16260	16377	22021	22021					0.18616476787428837
IRLFTTRSL	9	Unmodified	_IRLFTTRSL_					0	0	0			REV__ENST00000472918.5_1_22:26902745-26908398:-|nuORF	REV__ENST00000472918.5_1_22:26902745-26908398:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	554.21337890625	2	553.837665	1105.66078	-0.97391	-0.00053939	0.36983	0.00020482	-0.60408	-0.00033456	553.8376477466716	49.162	0.35578	49.919	49.69	50.046	0.75737					13	6	3	0	0	0	0.75782	1	18440	18440		10.8	0	1	2636700	+		22438	25141	16261	16378	22022	22022					0.11217400013924816
IRLHLSQLVY	10	Unmodified	_IRLHLSQLVY_					0	0	0			REV__nc|ENSG00000139370|Q8N697-2|SLC15A4	REV__nc|ENSG00000139370|Q8N697-2|SLC15A4	MULTI-MSMS	A375_MHC_IP_R1	1	414.6357727050781	3	414.583674	1240.72919	-0.034423	-1.4271E-05	-0.20968	-8.693E-05	-0.2441	-0.0001012	414.58355873977683	41.392	0.50799	41.392	41.114	41.622	0					27	9	4	0	0	0	0.44241	1	14308	14308		31.636	18.78	1	29775000	+		22439	19155	16262	16379	22023	22023					0.11845644593790894
IRLHLSQLVY	10	Unmodified	_IRLHLSQLVY_					0	0	0			REV__nc|ENSG00000139370|Q8N697-2|SLC15A4	REV__nc|ENSG00000139370|Q8N697-2|SLC15A4	MULTI-SECPEP	A375_MHC_IP_R1	1	414.9836730957031	3	414.583674	1240.72919	-0.034423	-1.4271E-05	-0.20968	-8.693E-05	-0.2441	-0.0001012	414.58355873977683	41.392	0.50799	41.392	41.114	41.622	0					27	9	4	0	0	0	0.68214	1	14252	14252		37.771	19.908	1	29775000	+		22440	19155	16262	16379	22024	22024					0.11845644593790894
IRLHLSQLVY	10	Unmodified	_IRLHLSQLVY_					0	0	0			REV__nc|ENSG00000139370|Q8N697-2|SLC15A4	REV__nc|ENSG00000139370|Q8N697-2|SLC15A4	MULTI-MSMS	A375_MHC_IP_R2	2	414.97039794921875	3	414.583674	1240.72919	-0.12341	-5.1164E-05	0.081787	3.3907E-05	-0.041623	-1.7256E-05	414.5836904352352	40.559	0.60999	41.333	41.082	41.692	0.77451					33	11	5	0	0	0	0.33943	1	15060	15060		37.771	22.933	1	26783000	+		22441	19155	16262	16379	22025	22025					0.11845644593790894
IRLHLSQLVY	10	Unmodified	_IRLHLSQLVY_					0	0	0			REV__nc|ENSG00000139370|Q8N697-2|SLC15A4	REV__nc|ENSG00000139370|Q8N697-2|SLC15A4	MULTI-SECPEP	A375_MHC_IP_R2	2	414.9832763671875	3	414.583674	1240.72919	-0.12341	-5.1164E-05	0.081787	3.3907E-05	-0.041623	-1.7256E-05	414.5836904352352	40.559	0.60999	41.333	41.082	41.692	0.77451					33	11	5	0	0	0	0.76274	1	14999	14999		31.636	21.321	1	26783000	+		22442	19155	16262	16379	22026	22026					0.11845644593790894
IRLIRVFCVVR	11	Unmodified	_IRLIRVFCVVR_					0	0	0			REV__KCNC3|p.R417C|1|0.55|ENSG00000131398|chr19:50323704-50323704|G/A|missense_variant	REV__KCNC3|p.R417C|1|0.55|ENSG00000131398|chr19:50323704-50323704|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	459.35845947265625	3	458.623586	1372.84893	-0.16238	-7.4471E-05	0.69274	0.00031771	0.53036	0.00024323	458.6238452502738	137.07	0.51482	137.18	137.02	137.53	0.11133					18	9	2	0	0	0	1.0014	1	53826	53826		0.08335	0.010087	1	4133000	+		22443	26821	16263	16380	22027	22027					0.17741934666673842
IRLIRVFCVVR	11	Unmodified	_IRLIRVFCVVR_					0	0	0			REV__KCNC3|p.R417C|1|0.55|ENSG00000131398|chr19:50323704-50323704|G/A|missense_variant	REV__KCNC3|p.R417C|1|0.55|ENSG00000131398|chr19:50323704-50323704|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	458.623586	1372.84893	-0.5492	-0.00025188	1.1983	0.00054958	0.64913	0.0002977	458.6241226627465	137.1	0.56615	137.1	136.97	137.54	0	-0.040727	0.00021091	NaN	0.08335	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3669300	+		22444	26821	16263	16380							0.17741934666673842
IRLKPLRKPN	10	Unmodified	_IRLKPLRKPN_					0	0	0		tr|U7T391|U7T391_FUSNUUDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenolN-acetylglucosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murGPE=3SV=1	tr|U7T391|U7T391_FUSNUUDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenolN-acetylglucosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murGPE=3SV=1	tr|U7T391|U7T391_FUSNUUDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenolN-acetylglucosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murGPE=3SV=1	MSMS	A375_MHC_IP_R2	2	617.8911743164062	2	617.908956	1233.80336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.703	1	82.446	81.946	82.946	0.74293								0	0	0	0.15591	1	31032	31032		1.6526	0.32309	1				22445	29958	16264	16381	22028	22028					0.19581032476003202
IRLLDCML	8	Unmodified	_IRLLDCML_					0	0	0			REV__ENSG00000154269|ENST00000357639|ENPP3	REV__ENSG00000154269|ENST00000357639|ENPP3	MULTI-SECPEP	A375_MHC_IP_R2	2	489.16949462890625	2	488.769548	975.524544	-0.627	-0.00030646	0.83555	0.00040839	0.20856	0.00010194	488.7698766303839	32.756	0.6104	33.493	33.112	33.722	0.73692					18	11	2	0	0	0	0.94479	1	11703	11703		13.508	0.97634	1	3578200	+		22446	19878	16265	16382	22029	22029					0.035802461874141045
IRLTCILRNDH	11	Unmodified	_IRLTCILRNDH_					0	0	0		VPREB1|p.T42I|1|0.35|ENSG00000169575|chr22:22245024-22245024|C/T|missense_variant	VPREB1|p.T42I|1|0.35|ENSG00000169575|chr22:22245024-22245024|C/T|missense_variant	VPREB1|p.T42I|1|0.35|ENSG00000169575|chr22:22245024-22245024|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	677.439453125	2	677.37462	1352.73469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.6277	1	10.075	9.5747	10.575	0.44698								0	0	0	0.16355	1	3001	3001		0.26902	0.26902	1				22447	30145	16266	16383	22030	22030					0.07243000113953713
IRLWMTWH	8	Unmodified	_IRLWMTWH_					0	0	0			REV__GRIN3A|p.G680R|1|0.38|ENSG00000198785|chr9:101670374-101670374|C/T|missense_variant	REV__GRIN3A|p.G680R|1|0.38|ENSG00000198785|chr9:101670374-101670374|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	381.6022644042969	3	381.535778	1141.5855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.636	1	23.266	22.766	23.766	0.63014								0	0	0	0.16876	1	7202	7202		6.2058	1.3088	1		+		22448	26713	16267	16384	22031	22031					0.020375192818619325
IRMERVYYRYH	11	Unmodified	_IRMERVYYRYH_					0	0	0			REV__nc|ENSG00000163636|Q15008-3|PSMD6	REV__nc|ENSG00000163636|Q15008-3|PSMD6	MULTI-SECPEP	A375_MHC_IP_R2	2	529.718017578125	3	529.273393	1584.79835	-0.49399	-0.00026146	0.068084	3.6035E-05	-0.42591	-0.00022542	529.6072665023964	133.63	0.7113	133.79	133.3	134.01	0.16489					34	13	4	0	0	0	1.0015	1	52388	52388		0	0	1	3035400	+		22449	20392	16268	16385	22032	22032					0.0293436055105758
IRNFLGKKYI	10	Unmodified	_IRNFLGKKYI_					0	0	0		ENST00000439124.1_1_6:64325734-64326112:-|nuORF	ENST00000439124.1_1_6:64325734-64326112:-|nuORF	ENST00000439124.1_1_6:64325734-64326112:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	626.779052734375	2	626.38224	1250.74993	-0.92179	-0.00057739	-1.529	-0.00095775	-2.4508	-0.0015351	626.381474408032	142.28	0.80931	142.28	142.08	142.89	0					27	15	3	0	0	0	0.72378	1	54675	54675		1.6526	0.17072	1	5604400			22450	11957	16269	16386	22033	22033					0.1345823497345009
IRNKEYKEA	9	Unmodified	_IRNKEYKEA_					0	0	0		ENSG00000198677|ENST00000358746|SKIC3;ENST00000510228.1_1_5:94882707-94882854:-|nuORF	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	MULTI-MSMS	A375_MHC_IP_R1	1	384.61126708984375	3	384.212017	1149.61422	0.24959	9.5896E-05	-1.5344	-0.00058954	-1.2848	-0.00049365	384.2113803673621	64.391	1.1178	64.391	63.887	65.005	0					35	21	2	0	0	0	0.72761	1	23361	23361		4.5289	0.33936	1	1494500			22451	9297	16270	16387	22034	22034					0.04539915392001603
IRNQIIREL	9	Unmodified	_IRNQIIREL_					0	0	0		ENSG00000126934|ENST00000262948|MAP2K2;ENST00000599345.1_1_19:4101110-4123872:-|nuORF;nc|ENSG00000169032|Q02750-2|MAP2K1;ENSG00000169032|ENST00000307102|MAP2K1;ENST00000425818.2_1_15:66679685-66737158:+|nuORF	ENSG00000126934|ENST00000262948|MAP2K2;ENST00000425818.2_1_15:66679685-66737158:+|nuORF	ENSG00000126934|ENST00000262948|MAP2K2	MULTI-MSMS	A375_MHC_IP_R1	1	385.9718017578125	3	385.571657	1153.69314	0.67135	0.00025885	-0.49942	-0.00019256	0.17193	6.6291E-05	385.57146466747804	45.209	1.0617	45.209	44.727	45.789	0					49	20	4	0	0	0	0.048392	1	15792	15792		64.927	34.223	1	27239000			22452	4071;11793	16271	16388	22035	22035					0.12244187416945351
IRNQIIREL	9	Unmodified	_IRNQIIREL_					0	0	0		ENSG00000126934|ENST00000262948|MAP2K2;ENST00000599345.1_1_19:4101110-4123872:-|nuORF;nc|ENSG00000169032|Q02750-2|MAP2K1;ENSG00000169032|ENST00000307102|MAP2K1;ENST00000425818.2_1_15:66679685-66737158:+|nuORF	ENSG00000126934|ENST00000262948|MAP2K2;ENST00000425818.2_1_15:66679685-66737158:+|nuORF	ENSG00000126934|ENST00000262948|MAP2K2	MULTI-SECPEP	A375_MHC_IP_R1	1	578.2539672851562	2	577.853847	1153.69314	0.22806	0.00013179	-0.37322	-0.00021567	-0.14516	-8.3879E-05	577.8536513253655	45.209	0.50398	45.209	45.03	45.534	0					18	9	3	0	0	0	0.46121	1	15817	15817		38.615	4.213	1	5109700			22453	4071;11793	16271	16388	22036	22036					0.12244187416945351
IRNQIIREL	9	Unmodified	_IRNQIIREL_					0	0	0		ENSG00000126934|ENST00000262948|MAP2K2;ENST00000599345.1_1_19:4101110-4123872:-|nuORF;nc|ENSG00000169032|Q02750-2|MAP2K1;ENSG00000169032|ENST00000307102|MAP2K1;ENST00000425818.2_1_15:66679685-66737158:+|nuORF	ENSG00000126934|ENST00000262948|MAP2K2;ENST00000425818.2_1_15:66679685-66737158:+|nuORF	ENSG00000126934|ENST00000262948|MAP2K2	MULTI-MSMS	A375_MHC_IP_R2	2	385.9716796875	3	385.571657	1153.69314	-0.031549	-1.2164E-05	-0.12217	-4.7105E-05	-0.15372	-5.9269E-05	385.5716134586692	44.241	0.80969	45.01	44.631	45.441	0.7691					26	15	2	0	0	0	0.042871	1	16469	16469		67.081	30.006	1	23441000			22454	4071;11793	16271	16388	22037	22037					0.12244187416945351
IRNQIIREL	9	Unmodified	_IRNQIIREL_					0	0	0		ENSG00000126934|ENST00000262948|MAP2K2;ENST00000599345.1_1_19:4101110-4123872:-|nuORF;nc|ENSG00000169032|Q02750-2|MAP2K1;ENSG00000169032|ENST00000307102|MAP2K1;ENST00000425818.2_1_15:66679685-66737158:+|nuORF	ENSG00000126934|ENST00000262948|MAP2K2;ENST00000425818.2_1_15:66679685-66737158:+|nuORF	ENSG00000126934|ENST00000262948|MAP2K2	MULTI-SECPEP	A375_MHC_IP_R2	2	578.2532348632812	2	577.853847	1153.69314	-0.096802	-5.5938E-05	-0.5496	-0.00031759	-0.6464	-0.00037353	577.8534848510928	44.214	0.40593	44.983	44.782	45.188	0.7691					17	7	3	0	0	0	0.76452	1	16493	16493		12.241	1.4167	1	4264300			22455	4071;11793	16271	16388	22038	22038					0.12244187416945351
IRNQLVNYI	9	Unmodified	_IRNQLVNYI_					0	0	0		ENSG00000164142|ENST00000435205|FHIP1A	ENSG00000164142|ENST00000435205|FHIP1A	ENSG00000164142|ENST00000435205|FHIP1A	MULTI-MSMS	A375_MHC_IP_R2	2	378.2730407714844	3	378.220624	1131.64004	-0.091999	-3.4796E-05	3.2786	0.00124	3.1866	0.0012052	378.5545205074342	41.328	0.91325	42.102	41.54	42.453	0.77451					24	17	2	0	0	0	0.64971	1	15231	15231		11.495	2.5185	1	1972400			22456	6789	16272	16389	22039	22039					0.07948809634262943
IRNYIQIQL	9	Unmodified	_IRNYIQIQL_					0	0	0		TAS2R16|p.G147R|1|0.2|ENSG00000128519|chr7:122995196-122995196|C/T|missense_variant	TAS2R16|p.G147R|1|0.2|ENSG00000128519|chr7:122995196-122995196|C/T|missense_variant	TAS2R16|p.G147R|1|0.2|ENSG00000128519|chr7:122995196-122995196|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	387.5997314453125	3	387.564391	1159.67134	-0.58556	-0.00022694	0.54281	0.00021037	-0.042749	-1.6568E-05	387.56470618631477	25.97	1.0655	26.629	25.992	27.058	0.65992					53	20	4	0	0	0	0.72761	1	8492	8492		4.5289	0.94181	1	31394000			22457	29297	16273	16390	22040	22040					0.09789382668395774
IRPDINVDV	9	Unmodified	_IRPDINVDV_					0	0	0		ENST00000464829.5_1_9:33469994-33473843:-|nuORF;nc|ENSG00000165271|Q9H6R4-3|NOL6;nc|ENSG00000165271|Q9H6R4-2|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6;ENSG00000165271|ENST00000297990|NOL6	ENST00000464829.5_1_9:33469994-33473843:-|nuORF	ENST00000464829.5_1_9:33469994-33473843:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	521.1901245117188	2	520.790381	1039.56621	-0.45526	-0.0002371	-0.85599	-0.00044579	-1.3113	-0.00068289	520.7901053175209	61.995	0.97249	61.995	61.636	62.609	0					32	18	3	0	0	0	0.33896	1	22373	22373		40.239	11.158	1	4552000			22458	6933	16274	16391	22041	22041					0.048008414719333814
IRPDINVDV	9	Unmodified	_IRPDINVDV_					0	0	0		ENST00000464829.5_1_9:33469994-33473843:-|nuORF;nc|ENSG00000165271|Q9H6R4-3|NOL6;nc|ENSG00000165271|Q9H6R4-2|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6;ENSG00000165271|ENST00000297990|NOL6	ENST00000464829.5_1_9:33469994-33473843:-|nuORF	ENST00000464829.5_1_9:33469994-33473843:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	521.189453125	2	520.790381	1039.56621	-0.94283	-0.00049102	-0.36609	-0.00019065	-1.3089	-0.00068167	520.7903545865662	61.263	0.65455	62.008	61.618	62.272	0.74503					27	12	3	0	0	0	0.47674	1	23182	23182		36.506	17.249	1	4816500			22459	6933	16274	16391	22042	22042					0.048008414719333814
IRPEHVLRL	9	Unmodified	_IRPEHVLRL_					0	0	0		ENST00000539658.1_1_12:121148334-121149523:+|nuORF;ENSG00000175970|ENST00000344651|UNC119B	ENST00000539658.1_1_12:121148334-121149523:+|nuORF	ENST00000539658.1_1_12:121148334-121149523:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	378.63665771484375	3	378.236497	1131.68766	0.4828	0.00018261	-0.035876	-1.357E-05	0.44693	0.00016904	378.2365103484377	38.704	0.46024	38.704	38.371	38.832	0					17	8	3	0	0	0	0.1401	1	13147	13147		43.477	25.104	1	3851900			22460	7990	16275	16392	22043	22043					0.1270850862510997
IRPEHVLRL	9	Unmodified	_IRPEHVLRL_					0	0	0		ENST00000539658.1_1_12:121148334-121149523:+|nuORF;ENSG00000175970|ENST00000344651|UNC119B	ENST00000539658.1_1_12:121148334-121149523:+|nuORF	ENST00000539658.1_1_12:121148334-121149523:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	378.636474609375	3	378.236497	1131.68766	-0.13787	-5.2148E-05	-0.1142	-4.3195E-05	-0.25207	-9.5342E-05	378.2365471527065	37.638	0.3588	38.413	38.175	38.534	0.77451					16	6	3	0	0	0	0.6894	1	13813	13813		7.9454	2.162	1	3520400			22461	7990	16275	16392	22044	22044					0.1270850862510997
IRPEVSNRE	9	Unmodified	_IRPEVSNRE_					0	0	0		ENST00000437398.5_1_22:24812732-24812975:+|nuORF	ENST00000437398.5_1_22:24812732-24812975:+|nuORF	ENST00000437398.5_1_22:24812732-24812975:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	549.6491088867188	2	550.296362	1098.57817	-0.020966	-1.1537E-05	2.0043	0.0011029	1.9833	0.0010914	550.7986740011755	44.721	0.30328	44.721	44.575	44.878	0					7	5	2	0	0	0	0.75164	1	15613	15613		9.3831	1.2276	1	1599000			22462	11939	16276	16393	22045	22045					0.03282458215130646
IRPKFPRKL	9	Unmodified	_IRPKFPRKL_					0	0	0		nc|ENSG00000172943|Q9UPP1-5|PHF8;nc|ENSG00000172943|Q9UPP1-4|PHF8;nc|ENSG00000172943|Q9UPP1-3|PHF8;ENSG00000172943|ENST00000338154|PHF8;nc|ENSG00000172943|Q9UPP1|PHF8;ENST00000338946.10_1_X:54013556-54014236:-|nuORF	nc|ENSG00000172943|Q9UPP1-5|PHF8	nc|ENSG00000172943|Q9UPP1-5|PHF8	MULTI-MSMS	A375_MHC_IP_R1	1	385.9889221191406	3	385.588871	1153.74478	0.13679	5.2746E-05	0.1575	6.073E-05	0.29429	0.00011348	385.58874159559707	25.588	0.71178	25.588	25.255	25.966	0					32	13	3	0	0	0	0.10637	1	7497	7497		49.527	25.737	1	13228000			22463	7751	16277	16394	22046	22046					0.1740597590148809
IRPKFPRKL	9	Unmodified	_IRPKFPRKL_					0	0	0		nc|ENSG00000172943|Q9UPP1-5|PHF8;nc|ENSG00000172943|Q9UPP1-4|PHF8;nc|ENSG00000172943|Q9UPP1-3|PHF8;ENSG00000172943|ENST00000338154|PHF8;nc|ENSG00000172943|Q9UPP1|PHF8;ENST00000338946.10_1_X:54013556-54014236:-|nuORF	nc|ENSG00000172943|Q9UPP1-5|PHF8	nc|ENSG00000172943|Q9UPP1-5|PHF8	MULTI-MSMS	A375_MHC_IP_R2	2	386.3227844238281	3	385.588871	1153.74478	-0.50851	-0.00019608	0.026731	1.0307E-05	-0.48178	-0.00018577	385.5888836444676	24.738	0.6603	25.382	25.161	25.822	0.64368					27	12	3	0	0	0	0.04093	1	8161	8161		67.838	37.998	1	15864000			22464	7751	16277	16394	22047	22047					0.1740597590148809
IRPQHPLLK	9	Unmodified	_IRPQHPLLK_					0	0	0			REV__nc|ENSG00000215859|A8MUH7-2|PDZK1P1	REV__nc|ENSG00000215859|A8MUH7-2|PDZK1P1	MULTI-MSMS	A375_MHC_IP_R2	2	368.2694091796875	3	367.901226	1100.68185	-0.23162	-8.5213E-05	-0.096207	-3.5395E-05	-0.32783	-0.00012061	367.9011791699495	34.025	0.81264	34.778	34.5	35.312	0.75225					34	15	3	0	0	0	0.74768	1	12399	12399		2.7352	0	1	54158000	+		22465	21305	16278	16395	22048	22048					0.13553410113445352
IRQCQLNRSR	10	Unmodified	_IRQCQLNRSR_					0	0	0			REV__ENST00000565717.5_1_16:2256398-2257242:+|nuORF	REV__ENST00000565717.5_1_16:2256398-2257242:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	424.6475524902344	3	425.23505	1272.68332	-0.32983	-0.00014025	-1.8219	-0.00077473	-2.1517	-0.00091498	425.232682341764	24.171	0.25433	24.171	24.042	24.296	0					9	4	3	0	0	0	0.93041	1	6748	6748		11.518	1.7536	1	5595800	+		22466	20806	16279	16396	22049	22049					0.05788676139900417
IRQRVLRVF	9	Unmodified	_IRQRVLRVF_					0	0	0		ENSG00000183313|ENST00000332249|OR52L1	ENSG00000183313|ENST00000332249|OR52L1	ENSG00000183313|ENST00000332249|OR52L1	MULTI-MSMS	A375_MHC_IP_R1	1	396.5961608886719	3	396.255891	1185.74584	-0.25938	-0.00010278	0.2115	8.3806E-05	-0.047885	-1.8975E-05	396.2559481191004	27.811	0.75506	27.811	27.533	28.288	0					35	14	3	0	0	0	0.74768	1	8538	8538		2.7352	0.23671	1	16160000			22467	8484	16280	16397	22050	22050					0.16040190270382482
IRQYGRIEW	9	Unmodified	_IRQYGRIEW_					0	0	0			REV__nc|ENSG00000164823|Q9Y236|OSGIN2	REV__nc|ENSG00000164823|Q9Y236|OSGIN2	MULTI-SECPEP	A375_MHC_IP_R1	1	407.1710510253906	3	407.556007	1219.64619	-0.25794	-0.00010512	0.40474	0.00016495	0.1468	5.9829E-05	407.55590530161277	76.122	0.25225	76.122	76.017	76.269	0					5	4	2	0	0	0	0.74875	1	27719	27719		10.8	0	1	413430	+		22468	20519	16281	16398	22051	22051					0.04515327865783547
IRRAEPNVL	9	Unmodified	_IRRAEPNVL_					0	0	0		nc|ENSG00000135318|P21589-2|NT5E;ENSG00000135318|ENST00000257770|NT5E	nc|ENSG00000135318|P21589-2|NT5E	nc|ENSG00000135318|P21589-2|NT5E	MULTI-MSMS	A375_MHC_IP_R1	1	356.9488525390625	3	356.548852	1066.62473	-0.052861	-1.8848E-05	-0.37368	-0.00013323	-0.42654	-0.00015208	356.5488002173418	27.399	0.55598	27.399	27.179	27.735	0					20	10	3	0	0	0	0.56584	1	8318	8318		16.566	1.3174	1	2388800			22469	4668	16282	16399	22052	22052					0.09407942837083283
IRRGLKYERL	10	Unmodified	_IRRGLKYERL_					0	0	0			REV__nc|ENSG00000085982|Q9NVE5|USP40	REV__nc|ENSG00000085982|Q9NVE5|USP40	MSMS	A375_MHC_IP_R1	1	435.2824401855469	3	435.270089	1302.78844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.856	1	81.856	81.356	82.356	0								0	0	0	0.15464	1	29920	29920		5.7834	0.88642	1		+		22470	16847	16283	16400	22053	22053					0.14915540607989897
IRRQKRKEHL	10	Unmodified	_IRRQKRKEHL_					0	0	0			REV__ENSG00000165462|ENST00000298231|PHOX2A	REV__ENSG00000165462|ENST00000298231|PHOX2A	MSMS	A375_MHC_IP_R1	1	682.46875	2	682.423294	1362.83203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.303	1	45.303	44.803	45.803	0								0	0	0	0.15631	1	15847	15847		0.35063	0	1		+		22471	20584	16284	16401	22054	22054					0.1651315010512917
IRRRKDKTIF	10	Unmodified	_IRRRKDKTIF_					0	0	0			REV__ENSG00000106031|ENST00000649031|HOXA13	REV__ENSG00000106031|ENST00000649031|HOXA13	MSMS	A375_MHC_IP_R1	1	666.6990356445312	2	666.91477	1331.81499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.179	1	99.179	98.679	99.679	0								0	0	0	0.15596	1	36434	36434		1.4819	0.15237	1		+		22472	17426	16285	16402	22055	22055					0.16235229499307025
IRRTERSLL	9	Unmodified	_IRRTERSLL_					0	0	0			REV__ENST00000427259.1_1_9:98632604-98637316:-|nuORF	REV__ENST00000427259.1_1_9:98632604-98637316:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	381.5875244140625	3	381.903406	1142.68839	-0.38572	-0.00014731	0.16545	6.3187E-05	-0.22026	-8.412E-05	381.9034623506	20.077	0.81126	20.687	20.146	20.958	0.6103					20	15	2	0	0	0	0.6343	1	6233	6233		12.873	0	1	1933400	+		22473	24664	16286	16403	22056	22056					0.12275303274191174
IRRYADYRH	9	Unmodified	_IRRYADYRH_					0	0	0		SPRED1|p.E384Rfs*6|1|0.93|ENSG00000166068|chr15:38351477-38351478|-/A|frameshift_variant;ENSG00000166068|ENST00000299084|SPRED1	SPRED1|p.E384Rfs*6|1|0.93|ENSG00000166068|chr15:38351477-38351478|-/A|frameshift_variant	SPRED1|p.E384Rfs*6|1|0.93|ENSG00000166068|chr15:38351477-38351478|-/A|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	417.6239013671875	3	417.223139	1248.64759	0.1608	6.7089E-05	0.8024	0.00033478	0.9632	0.00040187	417.22394049641406	64.689	0.5097	64.689	64.393	64.903	0					18	9	3	0	0	0	0.6898	1	23444	23444		4.897	1.31	1	1989900			22474	7021	16287	16404	22057	22057					0.033209619545459645
IRSEFNDDT	9	Unmodified	_IRSEFNDDT_					0	0	0			REV__ENST00000469684.1_1_15:44038662-44048907:+|nuORF	REV__ENST00000469684.1_1_15:44038662-44048907:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	549.14892578125	2	548.74891	1095.48327	-0.70739	-0.00038818	0.33108	0.00018168	-0.37631	-0.0002065	548.7490183783291	52.997	0.75993	52.997	52.694	53.453	0					32	14	3	0	0	0	0.61998	1	18855	18855		13.906	1.3745	1	4181500	+		22475	20725	16288	16405	22058	22058					-0.0606552004671812
IRSIASLLLL	10	Unmodified	_IRSIASLLLL_					0	0	0		ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	MSMS	A375_MHC_IP_R1	1	366.9416198730469	3	366.91302	1097.71723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.73	1	50.73	50.23	51.23	0								0	0	0	0.15357	1	17983	17983		9.2438	2.2067	1				22476	1734	16289	16406	22059	22059					0.17228027850615035
IRSKKLPSSI	10	Unmodified	_IRSKKLPSSI_					0	0	0			REV__ENSG00000125482|ENST00000334270|TTF1	REV__ENSG00000125482|ENST00000334270|TTF1	MULTI-MSMS	A375_MHC_IP_R2	2	377.307861328125	3	376.908157	1127.70264	-0.53285	-0.00020084	-0.10902	-4.1092E-05	-0.64188	-0.00024193	376.9080612754902	28.902	1.5065	29.6	29.03	30.537	0.69872					62	29	3	0	0	0	0.61662	1	9934	9934		19.626	4.3775	1	39629000	+		22477	18343	16290	16407	22060	22060					0.14389955702472434
IRSSHIKYI	9	Unmodified	_IRSSHIKYI_					0	0	0		nc|ENSG00000120992|O75608-2|LYPLA1;ENSG00000120992|ENST00000316963|LYPLA1;ENST00000519891.5_1_8:54967680-55013968:-|nuORF;ENST00000517297.5_1_8:54967680-55014407:-|nuORF;ENST00000519926.5_1_8:54966225-55014407:-|nuORF	nc|ENSG00000120992|O75608-2|LYPLA1	nc|ENSG00000120992|O75608-2|LYPLA1	MULTI-MSMS	A375_MHC_IP_R1	1	373.2890625	3	372.888986	1115.64513	0.25005	9.3242E-05	-0.018764	-6.9968E-06	0.23129	8.6245E-05	372.8889263074494	24.673	0.55497	24.673	24.447	25.002	0					22	10	3	0	0	0	0.0089117	1	7063	7063		97.741	65.704	1	37764000			22478	3702	16291	16408	22061	22061					0.09193113496894512
IRSSHIKYI	9	Unmodified	_IRSSHIKYI_					0	0	0		nc|ENSG00000120992|O75608-2|LYPLA1;ENSG00000120992|ENST00000316963|LYPLA1;ENST00000519891.5_1_8:54967680-55013968:-|nuORF;ENST00000517297.5_1_8:54967680-55014407:-|nuORF;ENST00000519926.5_1_8:54966225-55014407:-|nuORF	nc|ENSG00000120992|O75608-2|LYPLA1	nc|ENSG00000120992|O75608-2|LYPLA1	MULTI-SECPEP	A375_MHC_IP_R2	2	373.2889404296875	3	372.888986	1115.64513	0.17942	6.6905E-05	-0.012481	-4.6541E-06	0.16694	6.2251E-05	372.8889127042278	23.933	0.56109	24.563	24.435	24.996	0.63014					18	10	2	0	0	0	0.10502	1	7798	7798		77.049	51.028	1	28289000			22479	3702	16291	16408	22062	22062					0.09193113496894512
IRSSYIRVL	9	Unmodified	_IRSSYIRVL_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-SECPEP	A375_MHC_IP_R1	1	554.2373657226562	2	553.837665	1105.66078	-0.49871	-0.0002762	0.064144	3.5525E-05	-0.43457	-0.00024068	553.8376232448474	50.192	0.35765	50.192	49.947	50.305	0					13	6	3	0	0	0	0.51395	1	17758	17758		24.991	6.8446	1	2907900			22480	2155	16292	16409	22063	22063					0.11217400013947554
IRSSYIRVL	9	Unmodified	_IRSSYIRVL_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	A375_MHC_IP_R2	2	369.96063232421875	3	369.560869	1105.66078	0.095125	3.5154E-05	0.035313	1.305E-05	0.13044	4.8205E-05	369.5608304514011	49.137	0.8125	49.894	49.485	50.297	0.75737					35	15	4	0	0	0	0.06355	2	18432	18397;18432		59.013	32.992	1	15121000			22481	2155	16292	16409	22064;22065	22065					0.11217400013947554
IRSSYIRVL	9	Unmodified	_IRSSYIRVL_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	369.560869	1105.66078	0.35679	0.00013185	0.095342	3.5235E-05	0.45213	0.00016709	369.56087196876143	50.143	0.91916	50.143	49.54	50.459	0	0.12425	2.8163E-05	NaN	59.013	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16245000			22482	2155	16292	16409							0.11217400013947554
IRTDFLDVQG	10	Unmodified	_IRTDFLDVQG_					0	0	0		CACNA1G|p.S2140F|1|0.55|ENSG00000006283|chr17:50626036-50626036|C/T|missense_variant	CACNA1G|p.S2140F|1|0.55|ENSG00000006283|chr17:50626036-50626036|C/T|missense_variant	CACNA1G|p.S2140F|1|0.55|ENSG00000006283|chr17:50626036-50626036|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	581.7294311523438	2	582.306395	1162.59824	-0.17634	-0.00010268	2.2465	0.0013081	2.0701	0.0012054	582.811113923055	98.165	0.60825	98.165	97.743	98.352	0					20	11	3	0	0	0	0.83355	1	35922	35922		22.736	7.898	1	1581000			22483	278	16293	16410	22066	22066					0.02344209155057797
IRTDFLDVQG	10	Unmodified	_IRTDFLDVQG_					0	0	0		CACNA1G|p.S2140F|1|0.55|ENSG00000006283|chr17:50626036-50626036|C/T|missense_variant	CACNA1G|p.S2140F|1|0.55|ENSG00000006283|chr17:50626036-50626036|C/T|missense_variant	CACNA1G|p.S2140F|1|0.55|ENSG00000006283|chr17:50626036-50626036|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	582.306395	1162.59824	-0.5782	-0.00033669	2.6701	0.0015548	2.0919	0.0012181	582.3075097382984	97.193	0.25438	97.949	97.771	98.025	0.75586	-0.10837	0.00014882	NaN	22.736	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1818900			22484	278	16293	16410							0.02344209155057797
IRTTKDEKF	9	Unmodified	_IRTTKDEKF_					0	0	0		ENSG00000122728|ENST00000242310|TAF1L	ENSG00000122728|ENST00000242310|TAF1L	ENSG00000122728|ENST00000242310|TAF1L	MSMS	A375_MHC_IP_R1	1	379.93646240234375	3	379.880267	1136.61897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.716	1	36.716	36.216	37.216	0								0	0	0	0.15486	1	12311	12311		12.175	3.1985	1				22485	3804	16294	16411	22067	22067					0.056127995347424076
IRVGWEQLL	9	Unmodified	_IRVGWEQLL_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-SECPEP	A375_MHC_IP_R1	1	557.7244873046875	2	557.324391	1112.63423	-0.28007	-0.00015609	0.42171	0.00023503	0.14165	7.8944E-05	557.3245168769778	108.18	0.81268	108.18	107.75	108.56	0					32	15	3	0	0	0	0.074405	1	39639	39639		79.596	19.522	1	9823600			22486	1529;4242;9835	16295	16412	22068	22068					0.08241711122605011
IRVGWEQLL	9	Unmodified	_IRVGWEQLL_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-SECPEP	A375_MHC_IP_R2	2	557.7243041992188	2	557.324391	1112.63423	-0.82872	-0.00046186	0.043444	2.4213E-05	-0.78527	-0.00043765	557.3243811263441	107.23	0.76246	107.99	107.64	108.4	0.75436					34	14	3	0	0	0	0.16595	1	40478	40478		61.602	17.83	1	7449800			22487	1529;4242;9835	16295	16412	22069	22069					0.08241711122605011
IRVNQWYRTL	10	Unmodified	_IRVNQWYRTL_					0	0	0		ENST00000440859.7_1_7:107399090-107399198:+|nuORF	ENST00000440859.7_1_7:107399090-107399198:+|nuORF	ENST00000440859.7_1_7:107399090-107399198:+|nuORF	MSMS	A375_MHC_IP_R1	1	450.2773132324219	3	450.254328	1347.74115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.313	1	23.313	22.813	23.813	0								0	0	0	0.15411	1	6378	6378		7.4771	3.8844	1				22488	11976	16296	16413	22070	22070					0.0811926133696943
IRVPFLRQV	9	Unmodified	_IRVPFLRQV_					0	0	0		nc|ENSG00000124541|Q96EU6-2|RRP36;ENSG00000124541|ENST00000244496|RRP36	nc|ENSG00000124541|Q96EU6-2|RRP36	nc|ENSG00000124541|Q96EU6-2|RRP36	MULTI-MSMS	A375_MHC_IP_R1	1	376.9727478027344	3	376.573109	1126.6975	0.33537	0.00012629	-0.57051	-0.00021484	-0.23513	-8.8545E-05	376.5728219074482	75.529	0.50226	75.529	75.211	75.714	0					15	9	2	0	0	0	0.091096	1	27531	27531		47.594	28.232	1	1467600			22489	3910	16297	16414	22071	22071					0.1392169663047298
IRVPFLRQV	9	Unmodified	_IRVPFLRQV_					0	0	0		nc|ENSG00000124541|Q96EU6-2|RRP36;ENSG00000124541|ENST00000244496|RRP36	nc|ENSG00000124541|Q96EU6-2|RRP36	nc|ENSG00000124541|Q96EU6-2|RRP36	MULTI-MSMS	A375_MHC_IP_R2	2	376.9728088378906	3	376.573109	1126.6975	0.18554	6.9869E-05	-0.37972	-0.00014299	-0.19418	-7.3122E-05	376.5728542456221	74.485	0.66228	75.223	74.857	75.519	0.73751					25	12	3	0	0	0	0.091096	1	28274	28274		47.594	24.936	1	1783900			22490	3910	16297	16414	22072	22072					0.1392169663047298
IRWANPEEY	9	Unmodified	_IRWANPEEY_					0	0	0			REV__ENSG00000067596|ENST00000262415|DHX8	REV__ENSG00000067596|ENST00000262415|DHX8	MULTI-SECPEP	A375_MHC_IP_R2	2	393.9553527832031	3	393.192734	1176.55637	-0.45069	-0.00017721	3.7504	0.0014746	3.2997	0.0012974	393.1942836830049	18.956	0.28076	19.559	19.452	19.733	0.60308					9	5	2	0	0	0	0.78348	1	5713	5713		4.897	3.2444	1	10291000	+		22491	16533	16298	16415	22073	22073					-0.024843465334242865
IRWHYALY	8	Unmodified	_IRWHYALY_					0	0	0			REV__nc|ENSG00000167766|P51522-2|ZNF83	REV__nc|ENSG00000167766|P51522-2|ZNF83	MSMS	A375_MHC_IP_R1	1	374.4337158203125	3	374.534543	1120.5818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.198	1	36.198	35.698	36.698	0								0	0	0	0.16876	1	12097	12097		7.2892	0.18751	1		+		22492	20791	16299	16416	22074	22074					0.02633172779655979
IRWMPHQCTV	10	Unmodified	_IRWMPHQCTV_					0	0	0			REV__ENST00000570425.5_1_16:2963155-2979661:+|nuORF	REV__ENST00000570425.5_1_16:2963155-2979661:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	424.9909362792969	3	424.210966	1269.61107	-0.26479	-0.00011233	0.39582	0.00016791	0.13103	5.5583E-05	424.21039877162644	50.633	0.40413	51.387	51.311	51.715	0.75406					9	7	2	0	0	0	0.94269	1	19078	19078		5.7834	3.2849	1	874930	+		22493	26277	16300	16417	22075	22075					-0.012953742580293692
IRYFLDKRF	9	Unmodified	_IRYFLDKRF_					0	0	0			REV__tr|U7SVE2|U7SVE2_FUSNUPASdomainS-boxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01227PE=4SV=1	REV__tr|U7SVE2|U7SVE2_FUSNUPASdomainS-boxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01227PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	419.13494873046875	3	419.908269	1256.70298	0.077208	3.242E-05	0.081738	3.4322E-05	0.15895	6.6743E-05	419.90816698708676	46.804	0.45842	47.565	47.155	47.613	0.76127					14	8	2	0	0	0	0.80713	1	17442	17442		2.086	0	1	884230	+		22494	28591	16301	16418	22076	22076					0.08489375422323064
IRYFLDKRF	9	Unmodified	_IRYFLDKRF_					0	0	0			REV__tr|U7SVE2|U7SVE2_FUSNUPASdomainS-boxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01227PE=4SV=1	REV__tr|U7SVE2|U7SVE2_FUSNUPASdomainS-boxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01227PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		3	419.908269	1256.70298	0.17527	7.3599E-05	-0.21509	-9.0316E-05	-0.039812	-1.6717E-05	420.2423888646381	47.571	0.45398	47.571	47.315	47.768	0	0.0027515	-0.00011338	NaN	2.086	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1804200	+		22495	28591	16301	16418							0.08489375422323064
IRYYKVSAD	9	Unmodified	_IRYYKVSAD_					0	0	0		CORO2A|p.E299K|1|0.6|ENSG00000106789|chr9:98129866-98129866|C/T|missense_variant	CORO2A|p.E299K|1|0.6|ENSG00000106789|chr9:98129866-98129866|C/T|missense_variant	CORO2A|p.E299K|1|0.6|ENSG00000106789|chr9:98129866-98129866|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	557.0159301757812	2	557.798206	1113.58186	-0.46439	-0.00025904	0.43829	0.00024448	-0.026103	-1.456E-05	557.7983877466127	57.046	0.45776	57.046	56.753	57.211	0					15	8	2	0	0	0	0.77003	1	20456	20456		3.9444	0	1	1735400			22496	641	16302	16419	22077	22077					0.029611279890104925
ISAAFWYTI	9	Unmodified	_ISAAFWYTI_					0	0	0		KCND2|p.P358S|1|0.4|ENSG00000184408|chr7:120275704-120275704|C/T|missense_variant	KCND2|p.P358S|1|0.4|ENSG00000184408|chr7:120275704-120275704|C/T|missense_variant	KCND2|p.P358S|1|0.4|ENSG00000184408|chr7:120275704-120275704|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	536.67822265625	2	536.279118	1070.54368	-0.96422	-0.00051709	0.004879	2.6165E-06	-0.95934	-0.00051448	536.2790095966166	70.946	0.55624	71.681	71.352	71.908	0.73421					17	10	2	0	0	0	0.73363	1	26867	26867		10.824	0	1	4913000			22497	14192	16303	16420	22078	22078					0.011232420743453986
ISADIEVEGNT	11	Unmodified	_ISADIEVEGNT_					0	0	0			REV__ASRGL1|p.M77I|1|0.26|ENSG00000162174|chr11:62356365-62356365|G/A|missense_variant	REV__ASRGL1|p.M77I|1|0.26|ENSG00000162174|chr11:62356365-62356365|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	574.2003784179688	2	574.2775	1146.54045	-0.21887	-0.00012569	-3.6423	-0.0020917	-3.8612	-0.0022174	574.2758024903412	64.813	0.71165	65.551	65.206	65.917	0.73811					23	13	3	0	0	0	0.88813	1	24691	24691		19.362	0	1	1314200	+		22498	15467	16304	16421	22079	22079					-0.026960975609881643
ISAEAFYY	8	Unmodified	_ISAEAFYY_					0	0	0		ENSG00000183423|ENST00000594814|LRIT3	ENSG00000183423|ENST00000594814|LRIT3	ENSG00000183423|ENST00000594814|LRIT3	MSMS	A375_MHC_IP_R1	1	482.15777587890625	2	482.226551	962.438549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.866	1	83.866	83.366	84.366	0								0	0	0	0.16876	1	30698	30698		19.439	1.304	1				22499	8492	16305	16422	22080	22080					-0.04417299122098939
ISAFSQDNIY	10	Unmodified	_ISAFSQDNIY_					0	0	0		ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MULTI-MSMS	A375_MHC_IP_R1	1	579.6771240234375	2	579.277303	1156.54005	-0.18157	-0.00010518	-2.0273	-0.0011744	-2.2089	-0.0012795	579.2751353305357	55.374	0.61227	55.374	55.126	55.738	0					20	11	3	0	0	0	0.54492	1	19805	19805		24.991	3.2443	1	3594700			22500	3082	16306	16423	22081	22081					-0.0319547249016523
ISAGKNWMF	9	Unmodified	_ISAGKNWMF_					0	0	0		ENSG00000085872|ENST00000546361|CHERP;ENST00000546538.1_1_19:16643407-16652813:-|nuORF	ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6621704101562	2	527.262945	1052.51134	-0.47052	-0.00024809	-0.71702	-0.00037806	-1.1875	-0.00062614	527.7640945390583	76.264	0.76222	77.004	76.436	77.199	0.74052					22	14	3	0	0	0	0.20645	1	28991	28991		39.95	7.6442	1	2042200			22501	1821	16307	16424	22082	22082					-0.012818686003129187
ISAGLEEPPDV	11	Unmodified	_ISAGLEEPPDV_					0	0	0			REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1	REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1	MULTI-MSMS	A375_MHC_IP_R2	2	564.184326171875	2	563.784961	1125.55537	-0.71213	-0.00040149	0.11269	6.3534E-05	-0.59943	-0.00033795	563.7850005351766	35.646	0.35453	36.409	36.233	36.587	0.76338					12	6	3	0	0	0	0.18122	1	12974	12974		56.177	2.3442	1	2102000	+		22502	21908	16308	16425	22083	22083					-0.0023860569301632495
ISAIPARRL	9	Unmodified	_ISAIPARRL_					0	0	0		ENSG00000213171|ENST00000368820|LINGO4	ENSG00000213171|ENST00000368820|LINGO4	ENSG00000213171|ENST00000368820|LINGO4	MULTI-SECPEP	A375_MHC_IP_R2	2	498.62451171875	2	498.819276	995.623999	-0.73179	-0.00036503	-0.34178	-0.00017049	-1.0736	-0.00053552	498.8190708025314	34.767	0.35375	35.53	35.324	35.677	0.76338					10	6	2	0	0	0	0.79191	1	12548	12548		1.4819	1.4819	1	1278000			22503	9556	16309	16426	22084	22084					0.1260114818803686
ISAIPARRL	9	Unmodified	_ISAIPARRL_					0	0	0		ENSG00000213171|ENST00000368820|LINGO4	ENSG00000213171|ENST00000368820|LINGO4	ENSG00000213171|ENST00000368820|LINGO4	MULTI-MATCH	A375_MHC_IP_R1	1		2	498.819276	995.623999	-0.1607	-8.0159E-05	-0.83004	-0.00041404	-0.99074	-0.0004942	498.8189537586612	35.753	0.30826	35.753	35.573	35.881	0	0.11171	-0.00027009	NaN	1.4819	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1323700			22504	9556	16309	16426							0.1260114818803686
ISAIPEQRW	9	Unmodified	_ISAIPEQRW_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF;ENST00000588166.1_1_19:5135556-5138314:+|nuORF	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6650390625	2	550.298373	1098.58219	-1.1852	-0.00065221	-0.10637	-5.8538E-05	-1.2916	-0.00071074	550.2983188199225	59.124	0.75895	59.871	59.59	60.349	0.74714					42	14	4	0	0	0	0.03341	1	22377	22377		103.42	103.42	1	53658000			22505	4101	16310	16427	22085	22085					0.03684547708826358
ISAKNGVQW	9	Unmodified	_ISAKNGVQW_					0	0	0		nc|ENSG00000128463|Q5J8M3-2|EMC4	nc|ENSG00000128463|Q5J8M3-2|EMC4	nc|ENSG00000128463|Q5J8M3-2|EMC4	MULTI-SECPEP	A375_MHC_IP_R1	1	502.17169189453125	2	501.771991	1001.52943	-0.38197	-0.00019166	-0.39872	-0.00020006	-0.78069	-0.00039173	501.77178024769836	40.823	0.30282	40.823	40.66	40.963	0					10	5	2	0	0	0	0.28216	1	14097	14097		41.84	3.8656	1	1761900			22506	14590	16311	16428	22086	22086					0.028725896460514377
ISANITKFN	9	Unmodified	_ISANITKFN_					0	0	0		ENST00000547581.5_1_12:48529049-48539488:+|nuORF;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;nc|ENSG00000152556|P08237-2|PFKM	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	MSMS	A375_MHC_IP_R1	1	504.1999816894531	2	504.279649	1006.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.099	1	71.099	70.599	71.599	0								0	0	0	0.11922	1	25825	25825		36.127	3.8215	1				22507	5973	16312	16429	22087	22087					0.041734564432204024
ISAPDKRIY	9	Unmodified	_ISAPDKRIY_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2;ENST00000468712.5_1_7:26766479-26894483:-|nuORF	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MULTI-MSMS	A375_MHC_IP_R1	1	355.26947021484375	3	354.869591	1061.58694	0.062746	2.2266E-05	-0.4347	-0.00015426	-0.37195	-0.00013199	354.8694717931441	28.616	0.70779	28.616	28.288	28.996	0					34	13	4	0	0	0	0.23226	1	8839	8839		35.612	16.891	1	18932000			22508	879	16313	16430	22088	22088					0.05861431851622001
ISAPDKRIY	9	Unmodified	_ISAPDKRIY_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2;ENST00000468712.5_1_7:26766479-26894483:-|nuORF	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MULTI-MSMS	A375_MHC_IP_R2	2	355.60357666015625	3	354.869591	1061.58694	-0.29354	-0.00010417	-0.1612	-5.7206E-05	-0.45475	-0.00016138	354.8695000305341	27.951	0.70903	28.63	28.2	28.909	0.67857					24	13	3	0	0	0	0.068071	1	9600	9600		57.249	30.026	1	14930000			22509	879	16313	16430	22089	22089					0.05861431851622001
ISAPQERLY	9	Unmodified	_ISAPQERLY_					0	0	0		ENSG00000138107|ENST00000369905|ACTR1A;ENST00000470322.5_1_10:104240622-104242055:-|nuORF;ENSG00000115073|ENST00000289228|ACTR1B	ENSG00000138107|ENST00000369905|ACTR1A;ENSG00000115073|ENST00000289228|ACTR1B	ENSG00000138107|ENST00000369905|ACTR1A	MULTI-SECPEP	A375_MHC_IP_R2	2	539.189208984375	2	538.790381	1075.56621	-1.2318	-0.00066367	-0.040932	-2.2054E-05	-1.2727	-0.00068573	538.7903867739359	24.624	0.60873	25.268	25.11	25.719	0.64368					15	11	2	0	0	0	0.75164	1	8170	8170		13.906	11.329	1	3868400			22510	4958;3267	16314	16431	22090	22090					0.031448414719761786
ISARMPWW	8	Unmodified	_ISARMPWW_					0	0	0			REV__ENST00000298355.7_1_14:51561813-51561984:-|nuORF	REV__ENST00000298355.7_1_14:51561813-51561984:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	523.645751953125	2	523.765655	1045.51676	-1.0126	-0.00053035	1.412	0.00073954	0.39939	0.00020919	523.7672264635676	33.935	0.40371	34.687	34.45	34.853	0.75225					12	7	2	0	0	0	0.7338	1	12211	12211		24.674	8.5248	1	2488400	+		22511	23401	16315	16432	22091	22091					-0.004181450178521118
ISARSSEPFY	10	Unmodified	_ISARSSEPFY_					0	0	0		nc|ENSG00000143258|Q9UK80-3|USP21;ENSG00000143258|ENST00000368002|USP21;nc|ENSG00000143258|Q9UK80-2|USP21	nc|ENSG00000143258|Q9UK80-3|USP21	nc|ENSG00000143258|Q9UK80-3|USP21	MULTI-SECPEP	A375_MHC_IP_R1	1	386.5926513671875	3	386.192623	1155.55604	0.14561	5.6233E-05	0.060861	2.3504E-05	0.20647	7.9737E-05	386.192633077943	33.13	0.65896	33.13	32.734	33.393	0					24	12	3	0	0	0	0.93405	1	10774	10774		5.0475	2.9615	1	6890100			22512	5363	16316	16433	22092	22092					-0.01551766253282949
ISASTNIYI	9	Unmodified	_ISASTNIYI_					0	0	0			REV__tr|U7T1Z7|U7T1Z7_FUSNUDUF3290domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00700PE=4SV=1	REV__tr|U7T1Z7|U7T1Z7_FUSNUDUF3290domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00700PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	491.6659851074219	2	491.266207	980.517862	-0.42629	-0.00020942	0.14661	7.2026E-05	-0.27967	-0.00013739	491.2662495733278	90.524	0.66139	91.258	90.904	91.566	0.73451					22	12	3	0	0	0	0.29981	1	34442	34442		30.637	0	1	3146400	+		22513	28710	16317	16434	22093	22093					0.026823478320466165
ISATLNTKE	9	Unmodified	_ISATLNTKE_					0	0	0		nc|ENSG00000211805|A0A0B4J272|TRAV24	nc|ENSG00000211805|A0A0B4J272|TRAV24	nc|ENSG00000211805|A0A0B4J272|TRAV24	MULTI-MSMS	A375_MHC_IP_R1	1	489.1698303222656	2	488.769114	975.523675	-0.24355	-0.00011904	1.563	0.00076397	1.3195	0.00064493	488.76987783338393	33.588	0.50792	33.588	33.19	33.698	0					14	9	2	0	0	0	0.6324	1	11008	11008		13.042	0	1	2927000			22514	14883	16318	16435	22094	22094					0.034934463437252816
ISATLNTKE	9	Unmodified	_ISATLNTKE_					0	0	0		nc|ENSG00000211805|A0A0B4J272|TRAV24	nc|ENSG00000211805|A0A0B4J272|TRAV24	nc|ENSG00000211805|A0A0B4J272|TRAV24	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	488.769114	975.523675	-0.24355	-0.00011904	1.563	0.00076397	1.3195	0.00064493	488.76987783338393	33.588	0.50792	33.588	33.19	33.698	0	0.047243	-8.0108E-05	NaN	13.042	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2927000			22515	14883	16318	16435							0.034934463437252816
ISAVAVYDY	9	Unmodified	_ISAVAVYDY_					0	0	0		HCLS1|p.G441R|1|0.11|ENSG00000180353|chr3:121632104-121632104|C/T|missense_variant;ENSG00000180353|ENST00000314583|HCLS1	HCLS1|p.G441R|1|0.11|ENSG00000180353|chr3:121632104-121632104|C/T|missense_variant	HCLS1|p.G441R|1|0.11|ENSG00000180353|chr3:121632104-121632104|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	500.7076110839844	2	500.752933	999.491313	-0.51763	-0.0002592	0.0026087	1.3063E-06	-0.51502	-0.0002579	500.75291054542464	64.066	1.475	64.807	64.394	65.869	0.74022					54	28	3	0	0	0	0.32899	1	24399	24399		28.487	3.813	1	3190500			22516	14100	16319	16436	22095	22095					-0.008453410592892396
ISAVAVYDYQR	11	Unmodified	_ISAVAVYDYQR_					0	0	0		HCLS1|p.G441R|1|0.11|ENSG00000180353|chr3:121632104-121632104|C/T|missense_variant	HCLS1|p.G441R|1|0.11|ENSG00000180353|chr3:121632104-121632104|C/T|missense_variant	HCLS1|p.G441R|1|0.11|ENSG00000180353|chr3:121632104-121632104|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	428.9509582519531	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.416	1	48.177	47.677	48.677	0.76128								0	0	0	0.16182	1	17779	17779		9.2438	2.2067	1				22517	14100	16320	16437	22096	22096					0.020521672178801964
ISCAPSNLQY	10	Unmodified	_ISCAPSNLQY_					0	0	0			REV__ENST00000383657.9_1_3:123213292-123213379:-|nuORF	REV__ENST00000383657.9_1_3:123213292-123213379:-|nuORF	MSMS	A375_MHC_IP_R1	1	548.2028198242188	2	548.260599	1094.50665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.631	1	84.631	84.131	85.131	0								0	0	0	0.14983	1	31004	31004		18.146	0.011366	1		+		22518	24249	16321	16438	22097	22097					-0.036827975337246244
ISCENVDQD	9	Unmodified	_ISCENVDQD_					0	0	0			REV__NOTCH3|p.D393N|1|0.23|ENSG00000074181|chr19:15189288-15189288|C/T|missense_variant	REV__NOTCH3|p.D393N|1|0.23|ENSG00000074181|chr19:15189288-15189288|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	512.2011108398438	2	511.708396	1021.40224	-0.54885	-0.00028085	3.2429	0.0016594	2.694	0.0013786	512.2112746056576	65.03	0.15067	65.03	64.954	65.105	0					4	2	2	0	0	0	0.69674	1	23513	23513		7.2892	0	1	412120	+		22519	27621	16322	16439	22098	22098					-0.10760544081108492
ISCFTFYLF	9	Unmodified	_ISCFTFYLF_					0	0	0		ENST00000588736.1_1_17:74041371-74044231:-|nuORF	ENST00000588736.1_1_17:74041371-74044231:-|nuORF	ENST00000588736.1_1_17:74041371-74044231:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	570.7007446289062	2	570.775354	1139.53615	-0.13992	-7.9864E-05	1.0751	0.00061365	0.9352	0.00053379	570.7756170878608	37.553	0.35838	37.553	37.351	37.71	0					10	6	2	0	0	0	0.43707	1	12670	12670		36.044	1.9418	1	1763300			22520	13768	16323	16440	22099	22099					-0.028032335176249035
ISCLIQKGKY	10	Unmodified	_ISCLIQKGKY_					0	0	0		nc|ENSG00000164197|Q86T96-3|RNF180	nc|ENSG00000164197|Q86T96-3|RNF180	nc|ENSG00000164197|Q86T96-3|RNF180	MSMS	A375_MHC_IP_R2	2	576.9668579101562	2	576.825909	1151.63727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.242	1	74.98	74.48	75.48	0.73752								0	0	0	0.15451	1	28181	28181		6.2058	0.47393	1				22521	14726	16324	16441	22100	22100					0.06751218185104335
ISCMFDCF	8	Unmodified	_ISCMFDCF_					0	0	0			REV__ENST00000543155.5_1_12:6840383-6840503:+|nuORF	REV__ENST00000543155.5_1_12:6840383-6840503:+|nuORF	MSMS	A375_MHC_IP_R2	2	483.1761474609375	2	483.181917	964.349282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.376	1	61.121	60.621	61.621	0.74503								0	0	0	0.16876	1	22860	22860		5.7604	0	1		+		22522	25976	16325	16442	22101	22101					-0.1343191666912844
ISCWNFLY	8	Unmodified	_ISCWNFLY_					0	0	0		ENSG00000134897|ENST00000257336|BIVM;ENST00000490317.1_1_13:103473357-103492212:+|nuORF	ENSG00000134897|ENST00000257336|BIVM	ENSG00000134897|ENST00000257336|BIVM	MULTI-MSMS	A375_MHC_IP_R2	2	523.6605224609375	2	523.244221	1044.47389	-0.85223	-0.00044592	-0.041627	-2.1781E-05	-0.89385	-0.0004677	523.2440614100274	60.728	0.60849	61.473	61.16	61.769	0.74503					17	11	2	0	0	0	0.69583	1	22970	22970		36.044	1.9418	1	5342300			22523	4620	16326	16443	22102	22102					-0.04656959865928911
ISDAHFNDAY	10	Unmodified	_ISDAHFNDAY_					0	0	0			REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	MULTI-SECPEP	A375_MHC_IP_R2	2	577.1508178710938	2	576.751453	1151.48835	-0.46111	-0.00026595	-0.094432	-5.4464E-05	-0.55555	-0.00032041	576.7511926322126	54.18	0.45754	54.931	54.661	55.118	0.75081					11	7	2	0	0	0	0.83355	1	20482	20482		8.1555	8.1555	1	2478000	+		22524	19777	16327	16444	22103	22103					-0.08133216184091907
ISDAHFNDAY	10	Unmodified	_ISDAHFNDAY_					0	0	0			REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	MULTI-MATCH	A375_MHC_IP_R1	1		2	576.751453	1151.48835	-0.18393	-0.00010608	-0.17153	-9.893E-05	-0.35546	-0.00020501	576.7512177187563	54.885	0.40558	54.885	54.72	55.126	0	-0.022969	-5.6235E-05	NaN	8.1555	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1302200	+		22525	19777	16327	16444							-0.08133216184091907
ISDALMQQI	9	Unmodified	_ISDALMQQI_					0	0	0			REV__nc|ENSG00000104611|Q9H788-2|SH2D4A	REV__nc|ENSG00000104611|Q9H788-2|SH2D4A	MSMS	A375_MHC_IP_R2	2	509.67327880859375	2	509.765517	1017.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.437	1	66.175	65.675	66.675	0.73811								0	0	0	0.14851	1	24808	24808		24.021	2.2739	1		+		22526	17328	16328	16445	22104	22104					0.008423904716437391
ISDCEECKF	9	Unmodified	_ISDCEECKF_					0	0	0			REV__nc|ENSG00000005801|O14628-4|ZNF195	REV__nc|ENSG00000005801|O14628-4|ZNF195	MULTI-MSMS	A375_MHC_IP_R1	1	537.6173095703125	2	537.217543	1072.42053	-0.52275	-0.00028083	-0.26138	-0.00014042	-0.78413	-0.00042125	537.2174964978715	51.733	0.6096	51.733	51.373	51.982	0					25	11	3	0	0	0	0.32092	3	18351	18279;18309;18351		29.082	0.63772	1	7220100	+		22527	16124	16329	16446	22105;22106;22107	22107					-0.11278125430771979
ISDCEECKF	9	Unmodified	_ISDCEECKF_					0	0	0			REV__nc|ENSG00000005801|O14628-4|ZNF195	REV__nc|ENSG00000005801|O14628-4|ZNF195	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1732177734375	2	537.217543	1072.42053	-0.52275	-0.00028083	-0.26138	-0.00014042	-0.78413	-0.00042125	537.2174964978715	51.733	0.6096	51.733	51.373	51.982	0					25	11	3	0	0	0	0.35487	1	18430	18430		29.082	0	1	7220100	+		22528	16124	16329	16446	22108	22108					-0.11278125430771979
ISDCEECKF	9	Unmodified	_ISDCEECKF_					0	0	0			REV__nc|ENSG00000005801|O14628-4|ZNF195	REV__nc|ENSG00000005801|O14628-4|ZNF195	MULTI-MSMS	A375_MHC_IP_R2	2	537.6167602539062	2	537.217543	1072.42053	-1.0045	-0.00053962	-0.36303	-0.00019503	-1.3675	-0.00073465	537.2176531128782	51.144	0.75829	51.898	51.564	52.322	0.75381					35	14	3	0	0	0	0.32092	1	19219	19219		29.082	0	1	6534800	+		22529	16124	16329	16446	22109	22109					-0.11278125430771979
ISDCEECKF	9	Unmodified	_ISDCEECKF_					0	0	0			REV__nc|ENSG00000005801|O14628-4|ZNF195	REV__nc|ENSG00000005801|O14628-4|ZNF195	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1726684570312	2	537.217543	1072.42053	-1.0045	-0.00053962	-0.36303	-0.00019503	-1.3675	-0.00073465	537.2176531128782	51.144	0.75829	51.898	51.564	52.322	0.75381					35	14	3	0	0	0	0.35487	1	19226	19226		43.858	0	1	6534800	+		22530	16124	16329	16446	22110	22110					-0.11278125430771979
ISDDRRNP	8	Unmodified	_ISDDRRNP_					0	0	0		ENSG00000110723|ENST00000265843|EXPH5;nc|ENSG00000110723|Q8NEV8-2|EXPH5	ENSG00000110723|ENST00000265843|EXPH5	ENSG00000110723|ENST00000265843|EXPH5	MULTI-MSMS	A375_MHC_IP_R1	1	486.6737976074219	2	486.746505	971.478456	-0.14215	-6.9193E-05	-1.8477	-0.00089936	-1.9899	-0.00096855	486.7445722069965	56.091	0.50608	56.091	55.891	56.397	0					14	9	2	0	0	0	0.77488	1	20063	20063		13.508	1.8676	1	698000			22531	2945	16330	16447	22111	22111					-0.008423593988140965
ISDEFSEVIK	10	Unmodified	_ISDEFSEVIK_					0	0	0		ENSG00000013016|ENST00000322054|EHD3;ENSG00000110047|ENST00000320631|EHD1	ENSG00000013016|ENST00000322054|EHD3;ENSG00000110047|ENST00000320631|EHD1	ENSG00000110047|ENST00000320631|EHD1	MULTI-MSMS	A375_MHC_IP_R1	1	584.2001342773438	2	583.800611	1165.58667	-0.27953	-0.00016319	-0.35606	-0.00020787	-0.63559	-0.00037106	583.8003353418103	38.552	0.6139	38.552	38.268	38.882	0					31	11	4	0	0	0	0.54492	1	13072	13072		24.991	3.454	1	16249000			22532	1015;2911	16331	16448	22112	22112					0.010499673411004551
ISDEREKFKN	10	Unmodified	_ISDEREKFKN_					0	0	0			REV__tr|U7T190|U7T190_FUSNUTranscriptiontermination/antiterminationproteinNusAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusAPE=3SV=1	REV__tr|U7T190|U7T190_FUSNUTranscriptiontermination/antiterminationproteinNusAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	422.27166748046875	3	422.554331	1264.64116	0.033589	1.4193E-05	-0.37249	-0.0001574	-0.3389	-0.0001432	422.5542951675304	20.236	0.65841	20.236	19.928	20.587	0					30	12	4	0	0	0	0.90611	1	5182	5182		19.987	5.8162	1	5095400	+		22533	28699	16332	16449	22113	22113					0.01942979212526552
ISDEREKFKN	10	Unmodified	_ISDEREKFKN_					0	0	0			REV__tr|U7T190|U7T190_FUSNUTranscriptiontermination/antiterminationproteinNusAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusAPE=3SV=1	REV__tr|U7T190|U7T190_FUSNUTranscriptiontermination/antiterminationproteinNusAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	422.954345703125	3	422.554331	1264.64116	-0.40606	-0.00017158	0.53051	0.00022417	0.12445	5.2587E-05	422.55471947797315	19.112	0.50227	19.715	19.483	19.986	0.60308					29	9	4	0	0	0	0.79938	1	5883	5883		29.281	8.41	1	6166900	+		22534	28699	16332	16449	22114	22114					0.01942979212526552
ISDFESCQV	9	Unmodified	_ISDFESCQV_					0	0	0			REV__nc|ENSG00000142303|Q9H324|ADAMTS10	REV__nc|ENSG00000142303|Q9H324|ADAMTS10	MSMS	A375_MHC_IP_R1	1	514.1951904296875	2	514.223682	1026.43281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.263	1	58.263	57.763	58.763	0								0	0	0	0.15283	1	20925	20925		16.942	1.1741	1		+		22535	19304	16333	16450	22115	22115					-0.0793476569606355
ISDGVVLFID	10	Unmodified	_ISDGVVLFID_					0	0	0		EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant;EFTUD2|p.S944*|1|0.12|ENSG00000108883|chr17:44851362-44851363|CT/-|frameshift_variant;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;nc|ENSG00000108883|Q15029-2|EFTUD2	EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	539.1741943359375	2	539.294965	1076.57538	-0.46757	-0.00025216	2.3849	0.0012862	1.9173	0.001034	539.2971075067234	78.884	0.45531	78.884	78.556	79.011	0					9	8	2	0	0	0	0.69172	1	28789	28789		19.257	4.6753	1	1050200			22536	829	16334	16451	22116	22116					0.040151900376031335
ISDGVVLFID	10	Unmodified	_ISDGVVLFID_					0	0	0		EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant;EFTUD2|p.S944*|1|0.12|ENSG00000108883|chr17:44851362-44851363|CT/-|frameshift_variant;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;nc|ENSG00000108883|Q15029-2|EFTUD2	EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	539.294965	1076.57538	-0.83788	-0.00045186	-0.44057	-0.0002376	-1.2784	-0.00068946	539.2956930624797	78.121	0.35604	78.864	78.624	78.98	0.74293	-0.0099554	-0.0011439	NaN	19.257	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1061900			22537	829	16334	16451							0.040151900376031335
ISDHGTVTY	9	Unmodified	_ISDHGTVTY_					0	0	0		nc|ENSG00000005893|P13473-2|LAMP2;ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	MULTI-MSMS	A375_MHC_IP_R1	1	497.1374816894531	2	496.737814	991.461075	-0.59825	-0.00029717	0.095236	4.7307E-05	-0.50301	-0.00024987	496.7378424654311	27.942	0.45315	27.942	27.735	28.188	0					24	8	4	0	0	0	0.022213	2	8539	8539;8633		81.613	41.656	1	11493000			22538	14449	16335	16452	22117;22118	22117					-0.03499699724466154
ISDHGTVTY	9	Unmodified	_ISDHGTVTY_					0	0	0		nc|ENSG00000005893|P13473-2|LAMP2;ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	MULTI-MSMS	A375_MHC_IP_R2	2	497.13751220703125	2	496.737814	991.461075	-0.40585	-0.0002016	-0.24833	-0.00012335	-0.65417	-0.00032495	496.7376264230026	27.343	0.45885	28.021	27.792	28.251	0.67857					20	8	3	0	0	0	0.0097736	2	9334	9334;9416		112.59	66.572	1	14953000			22539	14449	16335	16452	22119;22120	22119					-0.03499699724466154
ISDIDVIDSQ	10	Unmodified	_ISDIDVIDSQ_					0	0	0		ENST00000567478.5_1_16:19467998-19503571:+|nuORF;nc|ENSG00000103534|Q6UXY8-3|TMC5	ENST00000567478.5_1_16:19467998-19503571:+|nuORF	ENST00000567478.5_1_16:19467998-19503571:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	553.0487670898438	2	552.774593	1103.53463	-0.60959	-0.00033696	-2.7697	-0.001531	-3.3793	-0.001868	552.7736821806488	68.633	0.25417	68.633	68.514	68.769	0					6	4	2	0	0	0	0.66308	1	24849	24849		16.149	0.90062	1	542440			22540	13571	16336	16453	22121	22121					-0.012991960726367324
ISDIFDIAENF	11	Unmodified	_ISDIFDIAENF_					0	0	0			REV__ENSG00000120129|ENST00000239223|DUSP1	REV__ENSG00000120129|ENST00000239223|DUSP1	MULTI-MSMS	A375_MHC_IP_R2	2	642.7106323242188	2	642.311343	1282.60813	-0.58884	-0.00037822	-0.24937	-0.00016017	-0.83821	-0.00053839	642.310988244264	86.733	1.0181	87.466	87.049	88.067	0.733					46	19	4	0	0	0	0.56199	1	33088	33088		26.268	1.2772	1	7146600	+		22541	18113	16337	16454	22122	22122					-0.02186647630196603
ISDKGNIKAL	10	Unmodified	_ISDKGNIKAL_					0	0	0			REV__ENST00000582176.1_1_3:127800095-127800410:-|nuORF	REV__ENST00000582176.1_1_3:127800095-127800410:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	530.1951904296875	2	529.813856	1057.61316	-0.53653	-0.00028426	-0.34409	-0.0001823	-0.88062	-0.00046656	529.8136511172177	59.699	0.55847	59.699	59.397	59.955	0					25	10	3	0	0	0	0.64716	1	21380	21380		12.241	0	1	12781000	+		22542	21368	16338	16455	22123	22123					0.08665701023096517
ISDLATHLED	10	Unmodified	_ISDLATHLED_					0	0	0		ENSG00000122376|ENST00000298786|SHLD2	ENSG00000122376|ENST00000298786|SHLD2	ENSG00000122376|ENST00000298786|SHLD2	MULTI-MSMS	A375_MHC_IP_R2	2	557.67431640625	2	557.274761	1112.53497	-1.0915	-0.00060829	-0.57346	-0.00031958	-1.665	-0.00092786	557.2744671854256	56.412	0.35752	57.162	56.948	57.306	0.75014					10	6	3	0	0	0	0.55789	1	21343	21343		24.021	0	1	1405300			22543	3776	16339	16456	22124	22124					-0.016797763527847565
ISDLFIDNY	9	Unmodified	_ISDLFIDNY_					0	0	0		ENSG00000187068|ENST00000335012|C3orf70	ENSG00000187068|ENST00000335012|C3orf70	ENSG00000187068|ENST00000335012|C3orf70	MULTI-SECPEP	A375_MHC_IP_R1	1	550.6680908203125	2	550.268947	1098.52334	-0.034908	-1.9209E-05	-1.1845	-0.0006518	-1.2194	-0.00067101	550.2680084303367	113.7	0.91746	113.7	113.14	114.06	0					42	17	3	0	0	0	0.030244	1	41636	41636		118.89	57.537	1	15570000			22544	8803	16340	16457	22125	22125					-0.0219797337615546
ISDLFIDNY	9	Unmodified	_ISDLFIDNY_					0	0	0		ENSG00000187068|ENST00000335012|C3orf70	ENSG00000187068|ENST00000335012|C3orf70	ENSG00000187068|ENST00000335012|C3orf70	MULTI-MSMS	A375_MHC_IP_R2	2	550.6683959960938	2	550.268947	1098.52334	-0.55916	-0.00030769	0.0042996	2.366E-06	-0.55486	-0.00030532	550.2686889841317	112.98	0.81816	113.71	113.22	114.04	0.72458					40	15	4	0	0	0	0.0099105	1	42557	42557		118.89	57.537	1	17738000			22545	8803	16340	16457	22126	22126					-0.0219797337615546
ISDLIRDSY	9	Unmodified	_ISDLIRDSY_					0	0	0		nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8;nc|ENSG00000204634|O95759-2|TBC1D8	nc|ENSG00000204634|O95759|TBC1D8	nc|ENSG00000204634|O95759|TBC1D8	MULTI-MSMS	A375_MHC_IP_R1	1	541.710693359375	2	541.279846	1080.54514	-0.56262	-0.00030454	-0.35457	-0.00019192	-0.91719	-0.00049646	541.2798416027975	57.084	1.677	57.084	56.347	58.024	0					100	32	5	0	0	0	0.12591	2	20394	20394;20697		46.022	6.0726	1	85444000			22546	9472	16341	16458	22127;22128	22127					0.008088313724329055
ISDLIRDSY	9	Unmodified	_ISDLIRDSY_					0	0	0		nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8;nc|ENSG00000204634|O95759-2|TBC1D8	nc|ENSG00000204634|O95759|TBC1D8	nc|ENSG00000204634|O95759|TBC1D8	MULTI-MSMS	A375_MHC_IP_R2	2	541.1949462890625	2	541.279846	1080.54514	-1.1533	-0.00062424	0.14762	7.9903E-05	-1.0056	-0.00054433	541.2801137352819	56.376	1.5812	57.126	56.337	57.918	0.75015					95	30	4	0	0	0	0.0064781	2	21275	21249;21275		132.38	42.245	1	108810000			22547	9472	16341	16458	22129;22130	22130					0.008088313724329055
ISDLLNDQDL	10	Unmodified	_ISDLLNDQDL_					0	0	0		nc|ENSG00000186197|Q8WWZ3-2|EDARADD;ENSG00000186197|ENST00000334232|EDARADD	nc|ENSG00000186197|Q8WWZ3-2|EDARADD	nc|ENSG00000186197|Q8WWZ3-2|EDARADD	MULTI-MSMS	A375_MHC_IP_R1	1	382.11907958984375	3	382.527671	1144.56118	0.27298	0.00010442	-2.0977	-0.00080243	-1.8247	-0.00069801	382.5278702349254	19.901	0.50672	19.901	19.623	20.129	0					15	9	3	0	0	0	0.66308	1	5056	5056		10.315	2.0288	1	697970			22548	8729	16342	16459	22131	22131					-0.00531507181312918
ISDLNELLK	9	Unmodified	_ISDLNELLK_					0	0	0		ENSG00000262814|ENST00000333676|MRPL12	ENSG00000262814|ENST00000333676|MRPL12	ENSG00000262814|ENST00000333676|MRPL12	MULTI-SECPEP	A375_MHC_IP_R2	2	523.2000122070312	2	522.800414	1043.58628	-0.60849	-0.00031812	-0.32464	-0.00016972	-0.93313	-0.00048784	522.8001483548745	75.104	0.76219	75.842	75.671	76.433	0.73751					24	14	3	0	0	0	0.11887	1	28517	28517		47.732	0.13759	1	6963100			22549	9949	16343	16460	22132	22132					0.06622592411895312
ISDLSINSLY	10	Unmodified	_ISDLSINSLY_					0	0	0		nc|ENSG00000173120|Q9Y2K7-4|KDM2A;nc|ENSG00000173120|Q9Y2K7-5|KDM2A;nc|ENSG00000173120|Q9Y2K7-2|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000524657.1_1_11:67020024-67022523:+|nuORF	nc|ENSG00000173120|Q9Y2K7-4|KDM2A	nc|ENSG00000173120|Q9Y2K7-4|KDM2A	MSMS	A375_MHC_IP_R1	1	562.7072143554688	2	562.795329	1123.5761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.79	1	108.79	108.29	109.29	0								0	0	0	0.12953	1	39909	39909		34.932	3.6637	1				22550	7771	16344	16461	22133	22133					0.019259846866816588
ISDMTGPEL	9	Unmodified	_ISDMTGPEL_					0	0	0			REV__ENSG00000101162|ENST00000217133|TUBB1	REV__ENSG00000101162|ENST00000217133|TUBB1	MULTI-MSMS	A375_MHC_IP_R2	2	482.12908935546875	2	481.7286	961.442648	-0.47713	-0.00022985	0.84978	0.00040936	0.37266	0.00017952	481.7289457175166	98.72	0.86298	99.479	99.201	100.06	0.75977					42	16	3	0	0	0	0.25276	1	37415	37415		34.102	0	1	23007000	+	+	22551	15844	16345	16462	22134	22134					-0.039615776906771316
ISDMTGPEL	9	Unmodified	_ISDMTGPEL_					0	0	0			REV__ENSG00000101162|ENST00000217133|TUBB1	REV__ENSG00000101162|ENST00000217133|TUBB1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	481.7286	961.442648	-0.37812	-0.00018215	0.65826	0.0003171	0.28013	0.00013495	481.72883901737885	99.585	1.2142	99.585	99.218	100.43	0	0.052843	-9.1815E-05	NaN	34.102	58	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23318000	+	+	22552	15844	16345	16462							-0.039615776906771316
ISDPDVRHTW	10	Unmodified	_ISDPDVRHTW_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3;ENST00000493546.1_1_X:153697446-153699024:+|nuORF	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	MULTI-SECPEP	A375_MHC_IP_R1	1	409.603271484375	3	409.203522	1224.58874	-0.33167	-0.00013572	0.4283	0.00017526	0.096623	3.9539E-05	409.20363603688634	36.77	0.70672	36.77	36.339	37.045	0					33	13	4	0	0	0	0.22006	1	12322	12322		72.59	44.356	1	17614000			22553	4288	16346	16463	22135	22135					-0.01457559130426489
ISDPDVRHTW	10	Unmodified	_ISDPDVRHTW_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3;ENST00000493546.1_1_X:153697446-153699024:+|nuORF	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	MULTI-MSMS	A375_MHC_IP_R2	2	409.60333251953125	3	409.203522	1224.58874	-0.11965	-4.8963E-05	0.3311	0.00013549	0.21144	8.6524E-05	409.203442878874	36.053	0.86683	36.817	36.333	37.2	0.76338					36	16	4	0	0	0	0.040521	1	13084	13084		78.61	50.429	1	22667000			22554	4288	16346	16463	22136	22136					-0.01457559130426489
ISDPDVRHTW	10	Unmodified	_ISDPDVRHTW_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3;ENST00000493546.1_1_X:153697446-153699024:+|nuORF	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	MULTI-MSMS	A375_MHC_IP_R2	2	613.7012329101562	2	613.301644	1224.58874	-0.69381	-0.00042551	-0.10323	-6.3309E-05	-0.79703	-0.00048882	613.3015885294217	36.019	0.35836	36.783	36.587	36.946	0.76338					12	6	3	0	0	0	0.10354	1	13118	13118		79.427	43.3	1	3445600			22555	4288	16346	16463	22137	22137					-0.01457559130426489
ISDPDVRHTW	10	Unmodified	_ISDPDVRHTW_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3;ENST00000493546.1_1_X:153697446-153699024:+|nuORF	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	MULTI-MATCH	A375_MHC_IP_R1	1		2	613.301644	1224.58874	-0.60605	-0.00037169	-0.25296	-0.00015514	-0.859	-0.00052683	613.3014676865719	36.763	0.30319	36.763	36.592	36.895	0	-0.0097027	-0.00010517	NaN	79.427	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1952700			22556	4288	16346	16463							-0.01457559130426489
ISDPFYGPWY	10	Unmodified	_ISDPFYGPWY_					0	0	0		ENSG00000157600|ENST00000372068|TMEM164;nc|ENSG00000157600|Q5U3C3-2|TMEM164	ENSG00000157600|ENST00000372068|TMEM164	ENSG00000157600|ENST00000372068|TMEM164	MULTI-MSMS	A375_MHC_IP_R2	2	623.1676635742188	2	622.784764	1243.55498	-0.90123	-0.00056127	-0.084865	-5.2853E-05	-0.9861	-0.00061413	622.7847884882298	65.476	0.66151	66.214	66.018	66.68	0.73812					24	12	3	0	0	0	0.71245	1	24990	24990		6.7232	0	1	3015000			22557	6254	16347	16464	22138	22138					-0.05705980622178686
ISDPGVQGY	9	Unmodified	_ISDPGVQGY_					0	0	0		ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	468.6268310546875	2	468.227082	934.439611	-0.46309	-0.00021683	0.27226	0.00012748	-0.19083	-8.9352E-05	468.2271703380115	46.972	0.92067	46.972	46.596	47.517	0					50	17	4	0	0	0	0.011017	1	16437	16437		136.33	75.944	1	44865000			22558	11256	16348	16465	22139	22139					-0.030230847531811378
ISDPGVQGY	9	Unmodified	_ISDPGVQGY_					0	0	0		ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	468.2980651855469	2	468.227082	934.439611	-0.51275	-0.00024008	0.064744	3.0315E-05	-0.448	-0.00020977	468.22707889783044	46.366	1.117	47.132	46.704	47.821	0.76519					62	21	5	0	0	0	0.0090323	2	17257	17257;17432		99.799	38.441	1	48121000			22559	11256	16348	16465	22140;22141	22140					-0.030230847531811378
ISDPSNCSQY	10	Unmodified	_ISDPSNCSQY_					0	0	0		nc|ENSG00000025156|Q03933-2|HSF2;ENSG00000025156|ENST00000368455|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	MULTI-MSMS	A375_MHC_IP_R1	1	557.6293334960938	2	557.229496	1112.44444	-0.46914	-0.00026142	0.29004	0.00016162	-0.1791	-9.9801E-05	557.2297272588311	97.709	0.45937	97.709	97.54	97.999	0					11	8	2	0	0	0	0.6806	1	35915	35915		14.838	0	1	1265400			22560	1086	16349	16466	22142	22142					-0.1072856867272094
ISDPSRSYF	9	Unmodified	_ISDPSRSYF_					0	0	0		ENSG00000149308|ENST00000278612|NPAT;ENST00000610253.5_1_11:108042863-108061204:-|nuORF	ENSG00000149308|ENST00000278612|NPAT	ENSG00000149308|ENST00000278612|NPAT	MULTI-MSMS	A375_MHC_IP_R2	2	536.2315673828125	2	536.258914	1070.50327	-0.98819	-0.00052992	0.4141	0.00022206	-0.57409	-0.00030786	536.2592370376059	48.907	0.45984	49.664	49.383	49.843	0.75737					14	8	2	0	0	0	0.41879	1	18332	18332		23.79	3.3752	1	2287300			22561	5799	16350	16467	22143	22143					-0.029157243160852886
ISDPYGNLKDF	11	Unmodified	_ISDPYGNLKDF_					0	0	0		nc|ENSG00000108469|O94762-2|RECQL5;nc|ENSG00000108469|O94762-3|RECQL5;nc|ENSG00000108469|O94762-4|RECQL5;ENSG00000108469|ENST00000317905|RECQL5	nc|ENSG00000108469|O94762-2|RECQL5	nc|ENSG00000108469|O94762-2|RECQL5	MULTI-SECPEP	A375_MHC_IP_R2	2	635.2112426757812	2	634.81151	1267.60847	-0.84375	-0.00053562	-0.21441	-0.00013611	-1.0582	-0.00067173	634.8114193458897	74.606	0.56009	75.344	75.111	75.671	0.73751					17	10	3	0	0	0	0.69618	1	28330	28330		42.835	27.587	1	1341600			22562	2804	16351	16468	22144	22144					-0.01463227910335263
ISDQDNDGTL	10	Unmodified	_ISDQDNDGTL_					0	0	0		nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-5|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1;nc|ENSG00000126858|Q8IXI2-6|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	MSMS	A375_MHC_IP_R2	2	539.2076416015625	2	539.238375	1076.4622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.48	1	108.24	107.74	108.74	0.75436								0	0	0	0.15105	1	40605	40605		15.847	1.2655	1				22563	4065	16352	16469	22145	22145					-0.07297530146206554
ISDRWESQLWR	11	Unmodified	_ISDRWESQLWR_					0	0	0		nc|ENSG00000147231|Q6NSI4-3|RADX;nc|ENSG00000147231|Q6NSI4-4|RADX;ENSG00000147231|ENST00000372548|RADX	nc|ENSG00000147231|Q6NSI4-3|RADX	nc|ENSG00000147231|Q6NSI4-3|RADX	MULTI-MSMS	A375_MHC_IP_R1	1	492.6612854003906	3	492.584513	1474.73171	-0.63562	-0.0003131	0.49539	0.00024402	-0.14023	-6.9075E-05	492.58460531021933	38.32	0.61135	38.32	38.118	38.73	0					15	11	2	0	0	0	0.73472	1	12946	12946		4.4062	1.2722	1	7733900			22564	5671	16353	16470	22146	22146					0.013334482607888276
ISDSCLHSSPM	11	Unmodified	_ISDSCLHSSPM_					0	0	0		OR4K14|p.P53S|1|0.14|ENSG00000169484|chr14:20015037-20015037|G/A|missense_variant	OR4K14|p.P53S|1|0.14|ENSG00000169484|chr14:20015037-20015037|G/A|missense_variant	OR4K14|p.P53S|1|0.14|ENSG00000169484|chr14:20015037-20015037|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	588.6665649414062	2	588.754824	1175.49509	-0.93396	-0.00054987	-2.2181	-0.0013059	-3.152	-0.0018558	588.753802145001	58.818	0.35508	59.565	59.438	59.793	0.74714					9	6	2	0	0	0	0.52598	1	22275	22275		29.082	5.061	1	1840500			22565	15078	16354	16471	22147	22147					-0.08563362619383952
ISDSGYTQC	9	Unmodified	_ISDSGYTQC_					0	0	0		nc|ENSG00000104755|Q99965-2|ADAM2;ADAM2|p.W716Mfs*4|1|0.43|ENSG00000104755|chr8:39746500-39746501|-/T|frameshift_variant;ENSG00000104755|ENST00000265708|ADAM2	nc|ENSG00000104755|Q99965-2|ADAM2	nc|ENSG00000104755|Q99965-2|ADAM2	MULTI-MSMS	A375_MHC_IP_R1	1	487.6729431152344	2	487.200207	972.385861	-0.41708	-0.0002032	0.79167	0.0003857	0.37459	0.0001825	487.20058057698174	46.92	0.61507	46.92	46.596	47.211	0					24	11	3	0	0	0	0.22528	1	16465	16465		36.127	0	1	5482000			22566	46	16355	16472	22148	22148					-0.10143625247201271
ISDSLLRKY	9	Unmodified	_ISDSLLRKY_					0	0	0		nc|ENSG00000005100|Q9H6R0-2|DHX33;ENSG00000005100|ENST00000225296|DHX33	nc|ENSG00000005100|Q9H6R0-2|DHX33	nc|ENSG00000005100|Q9H6R0-2|DHX33	MULTI-SECPEP	A375_MHC_IP_R1	1	365.2694396972656	3	365.544996	1093.61316	-0.07467	-2.7295E-05	0.31541	0.0001153	0.24074	8.8002E-05	365.54505979930326	41.274	0.30457	41.274	41.063	41.368	0					9	5	2	0	0	0	0.35487	1	14232	14232		21.59	0	1	2051400			22567	883	16356	16473	22149	22149					0.0700970102309384
ISDSLLRKY	9	Unmodified	_ISDSLLRKY_					0	0	0		nc|ENSG00000005100|Q9H6R0-2|DHX33;ENSG00000005100|ENST00000225296|DHX33	nc|ENSG00000005100|Q9H6R0-2|DHX33	nc|ENSG00000005100|Q9H6R0-2|DHX33	MULTI-MSMS	A375_MHC_IP_R2	2	365.945068359375	3	365.544996	1093.61316	-0.041593	-1.5204E-05	-0.21004	-7.678E-05	-0.25164	-9.1984E-05	365.54501663556954	40.5	0.40557	41.275	40.98	41.386	0.77451					12	7	2	0	0	0	0.52197	1	15021	15021		18.721	9.745	1	2576500			22568	883	16356	16473	22150	22150					0.0700970102309384
ISDTEPWSQH	10	Unmodified	_ISDTEPWSQH_					0	0	0			REV__ENST00000263708.6_1_2:120567469-120620160:+|nuORF	REV__ENST00000263708.6_1_2:120567469-120620160:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	600.6697387695312	2	600.27001	1198.52547	-0.10292	-6.1777E-05	-0.66847	-0.00040126	-0.77139	-0.00046304	600.2696445235082	48.103	0.50543	48.103	47.87	48.375	0					23	9	3	0	0	0	0.6502	1	16941	16941		17.113	17.113	1	6312400	+		22569	23228	16357	16474	22151	22151					-0.06585544638323881
ISDTLLYY	8	Unmodified	_ISDTLLYY_					0	0	0		tr|U7SZI1|U7SZI1_FUSNUYfcCfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00762PE=4SV=1	tr|U7SZI1|U7SZI1_FUSNUYfcCfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00762PE=4SV=1	tr|U7SZI1|U7SZI1_FUSNUYfcCfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00762PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	494.6716003417969	2	494.255308	986.496064	-0.90054	-0.0004451	-0.45499	-0.00022488	-1.3555	-0.00066998	494.25369475598956	29.811	0.65601	30.509	30.236	30.892	0.69872					19	12	3	0	0	0	0.78043	1	10506	10506		24.674	0	1	2527200			22570	29863	16358	16475	22152	22152					0.002275430834629333
ISDTMVAQL	9	Unmodified	_ISDTMVAQL_					0	0	0		ENSG00000102572|ENST00000539966|STK24;nc|ENSG00000102572|Q9Y6E0|STK24	ENSG00000102572|ENST00000539966|STK24	ENSG00000102572|ENST00000539966|STK24	MULTI-SECPEP	A375_MHC_IP_R2	2	488.6408386230469	2	489.252243	976.489932	-0.54004	-0.00026422	-0.62708	-0.0003068	-1.1671	-0.00057102	489.25193789377147	98.404	0.61021	99.163	98.844	99.454	0.75977					17	11	2	0	0	0	0.43707	1	37422	37422		21.747	0	1	1907600			22571	2383	16359	16476	22153	22153					0.00074701580308556
ISDVKEEK	8	Unmodified	_ISDVKEEK_					0	0	0			REV__ENSG00000134070|ENST00000256458|IRAK2	REV__ENSG00000134070|ENST00000256458|IRAK2	MULTI-SECPEP	A375_MHC_IP_R2	2	473.6662292480469	2	474.25584	946.497126	-0.53735	-0.00025484	0.12614	5.9822E-05	-0.41121	-0.00019502	474.25562182920225	75.894	0.35539	76.634	76.487	76.843	0.74052					8	6	2	0	0	0	0.90775	1	28886	28886		20.454	0	1	719380	+		22572	18750	16360	16477	22154	22154					0.021737574523854164
ISDVKVKRRL	10	Unmodified	_ISDVKVKRRL_					0	0	0		ENST00000404220.7_1_21:34614177-34614213:+|nuORF	ENST00000404220.7_1_21:34614177-34614213:+|nuORF	ENST00000404220.7_1_21:34614177-34614213:+|nuORF	MSMS	A375_MHC_IP_R2	2	607.3985595703125	2	607.390596	1212.76664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.19	1	112.91	112.41	113.41	0.72458								0	0	0	0.15531	1	42297	42297		3.5965	0.8613	1				22573	11581	16361	16478	22155	22155					0.16876735859409564
ISDWRMLW	8	Unmodified	_ISDWRMLW_					0	0	0		nc|ENSG00000255561|Q9BRP7-2|FDXACB1;ENSG00000255561|ENST00000260257|FDXACB1	nc|ENSG00000255561|Q9BRP7-2|FDXACB1	nc|ENSG00000255561|Q9BRP7-2|FDXACB1	MULTI-SECPEP	A375_MHC_IP_R2	2	553.0487670898438	2	553.776219	1105.53789	-0.7244	-0.00040115	0.53192	0.00029456	-0.19248	-0.00010659	553.7767749307393	67.702	0.40653	68.438	68.256	68.663	0.73631					12	7	2	0	0	0	0.96296	1	25623	25623		2.5775	0	1	695200			22574	9892	16362	16479	22156	22156					-0.010661797089824177
ISDYESSTGD	10	Unmodified	_ISDYESSTGD_					0	0	0			REV__ENSG00000196576|ENST00000359337|PLXNB2	REV__ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	A375_MHC_IP_R1	1	537.1990966796875	2	537.217108	1072.41966	-0.52275	-0.00028083	0.54686	0.00029378	0.02411	1.2952E-05	537.2174964978715	51.733	0.6096	51.733	51.373	51.982	0					25	11	3	0	0	0	0.45919	1	18335	18335		30.637	1.555	1	7220100	+		22575	22210	16363	16480	22157	22157					-0.11364925274438065
ISDYTEQHY	9	Unmodified	_ISDYTEQHY_					0	0	0		ENST00000558140.5_1_15:60802666-60820892:+|nuORF	ENST00000558140.5_1_15:60802666-60820892:+|nuORF	ENST00000558140.5_1_15:60802666-60820892:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	578.6508178710938	2	578.251286	1154.48802	-0.099926	-5.7782E-05	-0.059279	-3.4278E-05	-0.1592	-9.206E-05	578.2511816563028	62.677	2.8092	62.677	61.686	64.495	0					147	54	4	0	0	0	0.2002	1	22858	22858		37.974	18.612	1	14495000			22576	13462	16364	16481	22158	22158					-0.08304635903959934
ISDYTEQHY	9	Unmodified	_ISDYTEQHY_					0	0	0		ENST00000558140.5_1_15:60802666-60820892:+|nuORF	ENST00000558140.5_1_15:60802666-60820892:+|nuORF	ENST00000558140.5_1_15:60802666-60820892:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	578.6510620117188	2	578.251286	1154.48802	-0.16001	-9.2529E-05	-1.0416	-0.0006023	-1.2016	-0.00069483	578.2508104581054	77.631	0.71155	77.631	77.286	77.998	0					40	13	4	0	0	0	0.60101	2	28280	28280;28408		14.838	10.824	1	11059000			22577	13462	16364	16481	22159;22160	22159					-0.08304635903959934
ISDYTEQHY	9	Unmodified	_ISDYTEQHY_					0	0	0		ENST00000558140.5_1_15:60802666-60820892:+|nuORF	ENST00000558140.5_1_15:60802666-60820892:+|nuORF	ENST00000558140.5_1_15:60802666-60820892:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	578.6513671875	2	578.251286	1154.48802	-0.355	-0.00020528	-0.31645	-0.00018299	-0.67145	-0.00038827	578.2509789166705	48.933	0.91386	49.69	49.282	50.196	0.75737					41	17	3	0	0	0	0.60101	1	18341	18341		14.838	1.7958	1	4325600			22578	13462	16364	16481	22161	22161					-0.08304635903959934
ISDYTEQHY	9	Unmodified	_ISDYTEQHY_					0	0	0		ENST00000558140.5_1_15:60802666-60820892:+|nuORF	ENST00000558140.5_1_15:60802666-60820892:+|nuORF	ENST00000558140.5_1_15:60802666-60820892:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	578.6510620117188	2	578.251286	1154.48802	-0.37258	-0.00021545	-0.25244	-0.00014597	-0.62502	-0.00036142	578.2510569594297	62.16	2.4801	62.902	61.917	64.397	0.74263					137	48	4	0	0	0	0.2002	1	23716	23716		37.974	37.974	1	14233000			22579	13462	16364	16481	22162	22162					-0.08304635903959934
ISDYTEQHY	9	Unmodified	_ISDYTEQHY_					0	0	0		ENST00000558140.5_1_15:60802666-60820892:+|nuORF	ENST00000558140.5_1_15:60802666-60820892:+|nuORF	ENST00000558140.5_1_15:60802666-60820892:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	578.251286	1154.48802	-0.16001	-9.2529E-05	-1.0416	-0.0006023	-1.2016	-0.00069483	578.2508104581054	77.631	0.71155	77.631	77.286	77.998	0	-0.02509	-0.00019423	NaN	14.838	40	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11059000			22580	13462	16364	16481							-0.08304635903959934
ISEAQLHNIL	10	Unmodified	_ISEAQLHNIL_					0	0	0			REV__nc|ENSG00000124207|P55060-4|CSE1L	REV__nc|ENSG00000124207|P55060-4|CSE1L	MULTI-SECPEP	A375_MHC_IP_R1	1	569.7166748046875	2	569.316763	1136.61897	-0.16548	-9.4208E-05	-0.25798	-0.00014687	-0.42346	-0.00024108	569.3165938897255	71.322	0.60979	71.322	71.005	71.615	0					25	11	3	0	0	0	0.42334	1	25883	25883		51.63	7.8574	1	11142000	+		22581	18284	16365	16482	22163	22163					0.056127995347424076
ISEDTRPTLM	10	Unmodified	_ISEDTRPTLM_					0	0	0			REV__nc|ENSG00000067606|Q05513-3|PRKCZ	REV__nc|ENSG00000067606|Q05513-3|PRKCZ	MSMS	A375_MHC_IP_R1	1	581.5811767578125	2	581.792263	1161.56997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.31	1	102.31	101.81	102.81	0								0	0	0	0.15207	1	37599	37599		13.906	3.0821	1		+		22582	27111	16366	16483	22164	22164					-0.004348568164914468
ISEDTRPTLM	10	Unmodified	_ISEDTRPTLM_					0	0	0			REV__nc|ENSG00000067606|Q05513-3|PRKCZ	REV__nc|ENSG00000067606|Q05513-3|PRKCZ	MULTI-SECPEP	A375_MHC_IP_R1	1	582.1923828125	2	581.792263	1161.56997	0.023484	1.3663E-05	0.022362	1.301E-05	0.045846	2.6673E-05	581.7923451422786	107.72	0.71367	107.72	107.34	108.05	0					23	13	2	0	0	0	0.83355	1	39512	39512		17.113	0	1	3217800	+		22583	27111	16366	16483	22165	22165					-0.004348568164914468
ISEDYATAHE	10	Unmodified	_ISEDYATAHE_					0	0	0		ENSG00000143643|ENST00000366661|TTC13;nc|ENSG00000143643|Q8NBP0-2|TTC13	ENSG00000143643|ENST00000366661|TTC13	ENSG00000143643|ENST00000366661|TTC13	MULTI-SECPEP	A375_MHC_IP_R1	1	568.6478881835938	2	568.248743	1134.48293	-0.3169	-0.00018008	-0.80522	-0.00045757	-1.1221	-0.00063765	568.2484072972052	77.665	0.76155	77.665	77.133	77.895	0					23	14	2	0	0	0	0.69172	1	28322	28322		25.399	0	1	4484200			22584	5421	16367	16484	22166	22166					-0.07892939766566087
ISEEEIERIM	10	Unmodified	_ISEEEIERIM_					0	0	0		nc|ENSG00000148200|Q15406-3|NR6A1;nc|ENSG00000148200|Q15406-5|NR6A1;nc|ENSG00000148200|Q15406-2|NR6A1;nc|ENSG00000148200|Q15406-4|NR6A1;ENSG00000148200|ENST00000487099|NR6A1	nc|ENSG00000148200|Q15406-3|NR6A1	nc|ENSG00000148200|Q15406-3|NR6A1	MSMS	A375_MHC_IP_R2	2	624.7077026367188	2	624.810653	1247.60675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.67	1	91.405	90.905	91.905	0.7345								0	0	0	0.15207	1	34498	34498		13.906	1.6654	1				22585	5723	16368	16485	22167	22167					-0.007146049905941254
ISEEEIPEEP	10	Unmodified	_ISEEEIPEEP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;TTN|p.L14011*|1|0.26|ENSG00000155657|chr2:178618595-178618595|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R2	2	391.94512939453125	3	391.183681	1170.52921	-0.23237	-9.0899E-05	-1.4365	-0.00056193	-1.6688	-0.00065283	391.18371440776616	32.676	0.45721	33.413	33.112	33.569	0.73691					12	8	2	0	0	0	0.93578	1	11665	11665		5.7834	0	1	1500200			22586	6151;14694	16369	16486	22168	22168					-0.049229196551323184
ISEEELYISF	10	Unmodified	_ISEEELYISF_					0	0	0		ENST00000559902.5_1_15:60838538-60840020:+|nuORF	ENST00000559902.5_1_15:60838538-60840020:+|nuORF	ENST00000559902.5_1_15:60838538-60840020:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	615.7003784179688	2	615.300444	1228.58634	-0.39538	-0.00024328	0.54593	0.00033591	0.15055	9.2632E-05	615.3007410556171	52.464	0.45675	52.464	52.237	52.694	0					14	8	2	0	0	0	0.62155	1	18698	18698		19.257	2.1441	1	2540100			22587	13484	16370	16487	22169	22169					-0.01881452378756876
ISEEERDAY	9	Unmodified	_ISEEERDAY_					0	0	0		ENSG00000145703|ENST00000274364|IQGAP2;IQGAP2|p.K738Ifs*10|1|0.09|ENSG00000145703|chr5:76654234-76654244|AGAGCTATCTT/-|frameshift_variant	ENSG00000145703|ENST00000274364|IQGAP2	ENSG00000145703|ENST00000274364|IQGAP2	MULTI-MSMS	A375_MHC_IP_R1	1	556.7255859375	2	556.248743	1110.48293	-0.44431	-0.00024715	-0.91867	-0.00051101	-1.363	-0.00075816	556.7485114854593	56.152	0.50608	56.152	55.891	56.397	0					12	9	2	0	0	0	0.5339	1	20028	20028		18.135	4.2289	1	2302500			22588	5571	16371	16488	22170	22170					-0.06788939766556723
ISEEERDAY	9	Unmodified	_ISEEERDAY_					0	0	0		ENSG00000145703|ENST00000274364|IQGAP2;IQGAP2|p.K738Ifs*10|1|0.09|ENSG00000145703|chr5:76654234-76654244|AGAGCTATCTT/-|frameshift_variant	ENSG00000145703|ENST00000274364|IQGAP2	ENSG00000145703|ENST00000274364|IQGAP2	MULTI-MSMS	A375_MHC_IP_R2	2	556.7105102539062	2	556.248743	1110.48293	-0.79972	-0.00044484	0.38667	0.00021509	-0.41305	-0.00022976	556.2486196674542	31.394	0.46037	32.113	31.872	32.332	0.71857					13	8	2	0	0	0	0.5339	1	11005	11005		18.135	1.0221	1	2967100			22589	5571	16371	16488	22171	22171					-0.06788939766556723
ISEEERKY	8	Unmodified	_ISEEERKY_					0	0	0		ENST00000598018.1_1_19:49936751-49940072:-|nuORF;nc|ENSG00000104888|Q9P2U7-2|SLC17A7;nc|ENSG00000104888|Q9P2U7-3|SLC17A7;ENSG00000104888|ENST00000221485|SLC17A7	ENST00000598018.1_1_19:49936751-49940072:-|nuORF	ENST00000598018.1_1_19:49936751-49940072:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	351.6120910644531	3	351.845223	1052.51384	0.013797	4.8545E-06	-0.21895	-7.7037E-05	-0.20515	-7.2183E-05	351.8450861339085	43.362	0.55994	43.362	43.095	43.655	0					12	10	2	0	0	0	0.77488	1	15112	15112		10.074	2.465	1	831610			22590	2550	16372	16489	22172	22172					-0.010317416616544506
ISEEERKY	8	Unmodified	_ISEEERKY_					0	0	0		ENST00000598018.1_1_19:49936751-49940072:-|nuORF;nc|ENSG00000104888|Q9P2U7-2|SLC17A7;nc|ENSG00000104888|Q9P2U7-3|SLC17A7;ENSG00000104888|ENST00000221485|SLC17A7	ENST00000598018.1_1_19:49936751-49940072:-|nuORF	ENST00000598018.1_1_19:49936751-49940072:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	351.845223	1052.51384	-0.16731	-5.8867E-05	-0.27344	-9.6207E-05	-0.44075	-0.00015507	351.8449347882879	42.572	0.35635	43.344	43.116	43.472	0.7724	-0.0087885	-3.4426E-05	NaN	10.074	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1002400			22591	2550	16372	16489							-0.010317416616544506
ISEEGDEDES	10	Unmodified	_ISEEGDEDES_					0	0	0		ENST00000455717.2_1_X:84010839-84011007:+|nuORF	ENST00000455717.2_1_X:84010839-84011007:+|nuORF	ENST00000455717.2_1_X:84010839-84011007:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	555.677978515625	2	555.20948	1108.40441	-0.77691	-0.00043135	-2.64	-0.0014658	-3.4169	-0.0018971	555.7087294241489	77.169	0.55823	77.912	77.555	78.113	0.74293					14	10	2	0	0	0	0.60556	1	29265	29265		20.454	0	1	1101100			22592	12117	16373	16490	22173	22173					-0.1454583686231672
ISEELVQKY	9	Unmodified	_ISEELVQKY_					0	0	0		nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4;ENSG00000115310|ENST00000337526|RTN4;nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4	nc|ENSG00000115310|Q9NQC3-4|RTN4	nc|ENSG00000115310|Q9NQC3-4|RTN4	MULTI-SECPEP	A375_MHC_IP_R2	2	554.6796264648438	2	554.797872	1107.58119	-0.87479	-0.00048533	-0.096028	-5.3276E-05	-0.97082	-0.00053861	554.7978412495881	45.055	0.91464	45.824	45.492	46.407	0.76909					41	17	4	0	0	0	0.010853	1	17020	17020		152.89	70.357	1	45338000			22593	3300	16374	16491	22174	22174					0.0317028854929049
ISEELVQKY	9	Unmodified	_ISEELVQKY_					0	0	0		nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4;ENSG00000115310|ENST00000337526|RTN4;nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4	nc|ENSG00000115310|Q9NQC3-4|RTN4	nc|ENSG00000115310|Q9NQC3-4|RTN4	MULTI-SECPEP	A375_MHC_IP_R2	2	554.6796264648438	2	554.797872	1107.58119	-0.78506	-0.00043555	0.057674	3.1998E-05	-0.72738	-0.00040355	554.7978833212591	45.569	0.95918	46.334	46.099	47.058	0.76519					39	18	3	0	0	0	0.010853	1	17020	17020		152.89	70.357	1	12748000			22594	3300	16374	16491	22175	22175					0.0317028854929049
ISEERVCHL	9	Unmodified	_ISEERVCHL_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-SECPEP	A375_MHC_IP_R2	2	542.6728515625	2	543.274041	1084.53353	-1.0793	-0.00058638	0.16183	8.792E-05	-0.91751	-0.00049846	543.2743309955591	38.053	1.0753	38.827	38.175	39.25	0.77451					43	20	4	0	0	0	0.60917	1	13871	13871		19.257	0	1	8315200	+		22595	18742	16375	16492	22176	22176					-0.005356889225595296
ISEIFSDLDP	10	Unmodified	_ISEIFSDLDP_					0	0	0		nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	MULTI-SECPEP	A375_MHC_IP_R2	2	567.6593627929688	2	568.279512	1134.54447	-0.35155	-0.00019978	-2.1116	-0.0012	-2.4632	-0.0013998	568.7809713913499	76.675	0.30347	77.416	77.301	77.604	0.74052					7	5	2	0	0	0	0.61429	1	29181	29181		37.974	17.52	1	478160			22596	1669	16376	16493	22177	22177					-0.017420080672764016
ISEISSLYN	9	Unmodified	_ISEISSLYN_					0	0	0			REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	513.6609497070312	2	513.261122	1024.50769	-0.5647	-0.00028984	0.14851	7.6227E-05	-0.41619	-0.00021361	513.2610505635332	83.694	0.60848	83.694	83.329	83.937	0					20	11	2	0	0	0	0.47368	1	30626	30626		34.102	8.7031	1	3136600	+		22597	28270	16377	16494	22178	22178					-0.0035825989318709617
ISEKLVFFE	9	Unmodified	_ISEKLVFFE_					0	0	0		ENSG00000099203|ENST00000214869|TMED1	ENSG00000099203|ENST00000214869|TMED1	ENSG00000099203|ENST00000214869|TMED1	MULTI-SECPEP	A375_MHC_IP_R1	1	555.6657104492188	2	556.305332	1110.59611	-0.56407	-0.0003138	0.50232	0.00027944	-0.061751	-3.4353E-05	556.3047009410333	55.191	0.76084	55.191	54.67	55.431	0					34	14	5	0	0	0	0.47674	1	19781	19781		36.506	6.6656	1	2835300			22598	2068	16378	16495	22179	22179					0.0452378041729844
ISEKLVFFE	9	Unmodified	_ISEKLVFFE_					0	0	0		ENSG00000099203|ENST00000214869|TMED1	ENSG00000099203|ENST00000214869|TMED1	ENSG00000099203|ENST00000214869|TMED1	MULTI-MATCH	A375_MHC_IP_R2	2		2	556.305332	1110.59611	-0.9375	-0.00052154	-5.9898	-0.0033322	-6.9274	-0.0038537	556.3005147134203	54.798	0.25602	55.549	55.473	55.729	0.75075	0.17907	-0.0063186	NaN	36.506	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	503340			22599	2068	16378	16495							0.0452378041729844
ISEKRRNKY	9	Unmodified	_ISEKRRNKY_					0	0	0			REV__nc|ENSG00000284762|O95263-2|PDE8B	REV__nc|ENSG00000284762|O95263-2|PDE8B	MULTI-MSMS	A375_MHC_IP_R1	1	398.6277160644531	3	398.563161	1192.66765	-0.17205	-6.8572E-05	-0.8726	-0.00034779	-1.0446	-0.00041636	398.56275906717076	23.1	0.96177	23.1	22.673	23.635	0					31	18	2	0	0	0	0.66474	1	6262	6262		10.151	2.2052	1	20843000	+		22600	17770	16379	16496	22180	22180					0.07902712894519937
ISELAGERRFA	11	Unmodified	_ISELAGERRFA_					0	0	0		nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;SBNO2|p.L973Wfs*76|1|0.29|ENSG00000064932|chr19:1110856-1110856|G/-|frameshift_variant	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	MULTI-MSMS	A375_MHC_IP_R2	2	417.29425048828125	3	416.894688	1247.66223	-0.34322	-0.00014309	-0.11684	-4.8711E-05	-0.46006	-0.0001918	416.89457406346526	19.945	1.1163	20.555	19.79	20.907	0.61029					39	21	2	0	0	0	0.56199	1	6217	6217		16.275	0	1	3139900			22601	1363	16380	16497	22181	22181					0.04830989312040401
ISELERKLKRI	11	Unmodified	_ISELERKLKRI_					0	0	0		tr|U7SP67|U7SP67_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01745PE=4SV=1	tr|U7SP67|U7SP67_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01745PE=4SV=1	tr|U7SP67|U7SP67_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01745PE=4SV=1	MSMS	A375_MHC_IP_R2	2	692.5524291992188	2	692.935368	1383.85618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.613	1	96.364	95.864	96.864	0.75045								0	0	0	0.16307	1	36316	36316		2.7352	1.0826	1				22602	29569	16381	16498	22182	22182					0.17960945748109225
ISELFDAISY	10	Unmodified	_ISELFDAISY_					0	0	0		ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	MULTI-SECPEP	A375_MHC_IP_R2	2	578.627197265625	2	579.289879	1156.56521	-0.23637	-0.00013693	-2.5605	-0.0014833	-2.7969	-0.0016202	579.7893583569124	48.397	0.35289	49.155	48.929	49.282	0.75737					8	6	2	0	0	0	0.9269	1	18097	18097		3.5965	0	1	1466100			22603	7115	16382	16499	22183	22183					-0.0068141768761051935
ISEMLLGPVP	10	Unmodified	_ISEMLLGPVP_					0	0	0		nc|ENSG00000141994|Q96G46-3|DUS3L;ENSG00000141994|ENST00000309061|DUS3L;ENST00000589085.5_1_19:5785216-5787684:-|nuORF	nc|ENSG00000141994|Q96G46-3|DUS3L	nc|ENSG00000141994|Q96G46-3|DUS3L	MULTI-MSMS	A375_MHC_IP_R2	2	529.9616088867188	2	528.293911	1054.57327	-0.89718	-0.00047397	-3.6953	-0.0019522	-4.5925	-0.0024262	528.2929129703721	57.325	0.5614	58.074	57.865	58.427	0.74894					25	10	4	0	0	0	0.63639	1	21637	21637		18.146	3.3081	1	3424400			22604	5283	16383	16500	22184	22184					0.048164380281832564
ISENKFLKY	9	Unmodified	_ISENKFLKY_					0	0	0		ENSG00000107951|ENST00000263063|MTPAP;nc|ENSG00000107951|Q9NVV4-2|MTPAP;ENST00000488290.5_1_10:30602540-30654262:-|nuORF	ENSG00000107951|ENST00000263063|MTPAP	ENSG00000107951|ENST00000263063|MTPAP	MULTI-MSMS	A375_MHC_IP_R1	1	381.2647705078125	3	381.213246	1140.61791	0.045622	1.7392E-05	-1.4873	-0.00056697	-1.4417	-0.00054958	381.2132785207639	41.197	0.55745	41.197	40.963	41.521	0					16	10	2	0	0	0	0.062639	2	14243	14243;14274		59.368	25.923	1	3606100			22605	2772	16384	16501	22185;22186	22185					0.053225851658453394
ISENKFLKY	9	Unmodified	_ISENKFLKY_					0	0	0		ENSG00000107951|ENST00000263063|MTPAP;nc|ENSG00000107951|Q9NVV4-2|MTPAP;ENST00000488290.5_1_10:30602540-30654262:-|nuORF	ENSG00000107951|ENST00000263063|MTPAP	ENSG00000107951|ENST00000263063|MTPAP	MSMS	A375_MHC_IP_R2	2	381.2645568847656	3	381.213246	1140.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.361	1	41.135	40.635	41.635	0.77451								0	0	0	0.15	1	14944	14944		21.59	8.7175	1				22606	2772	16384	16501	22187	22187					0.053225851658453394
ISENTPETV	9	Unmodified	_ISENTPETV_					0	0	0		PCDHB11|p.P357S|1|0.13|ENSG00000197479|chr5:141200843-141200843|C/T|missense_variant	PCDHB11|p.P357S|1|0.13|ENSG00000197479|chr5:141200843-141200843|C/T|missense_variant	PCDHB11|p.P357S|1|0.13|ENSG00000197479|chr5:141200843-141200843|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	495.1819763183594	2	495.242929	988.471305	-0.5011	-0.00024816	-0.14948	-7.4027E-05	-0.65057	-0.00032219	495.2427424573382	44.627	0.96722	45.396	44.782	45.75	0.7691					38	18	3	0	0	0	0.32092	1	16724	16724		29.082	0	1	5154500			22607	15129	16385	16502	22188	22188					-0.02339136789908025
ISEPYLNDSYS	11	Unmodified	_ISEPYLNDSYS_					0	0	0			REV__ENST00000589104.5_1_19:5070919-5151519:+|nuORF	REV__ENST00000589104.5_1_19:5070919-5151519:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	644.9979858398438	2	644.290608	1286.56666	-0.49236	-0.00031722	-0.12844	-8.2752E-05	-0.6208	-0.00039997	644.2906778139215	61.433	0.25558	61.433	61.279	61.534	0					6	4	2	0	0	0	0.9889	1	22141	22141		4.897	1.6157	1	1406300	+		22608	18429	16386	16503	22189	22189					-0.06515828389524358
ISEQFTAMFR	10	Oxidation (M)	_ISEQFTAM(Oxidation (M))FR_		ISEQFTAM(1)FR		ISEQFTAM(53)FR	0	0	1		ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;nc|ENSG00000258947|Q13509-2|TUBB3	nc|ENSG00000258947|Q13509-2|TUBB3	MULTI-MSMS	A375_MHC_IP_R1	1	623.7002563476562	2	623.300255	1244.58596	-0.4788	-0.00029844	0.73861	0.00046038	0.25981	0.00016194	623.3008000151353	60.184	0.45792	60.184	59.905	60.363	0					12	8	2	0	0	0	0.16019	1	21663	21663		53.317	13.367	1	1645900			22609	9924;9016;4872	16387	16504	22190	22190		260			-0.02655150579630572
ISEQNTQLW	9	Unmodified	_ISEQNTQLW_					0	0	0			REV__ENST00000406175.3_1_2:42552692-42553342:+|nuORF	REV__ENST00000406175.3_1_2:42552692-42553342:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	559.0377807617188	2	559.77747	1117.54039	-0.51213	-0.00028668	-0.065849	-3.6861E-05	-0.57798	-0.00032354	559.777611234026	85.325	0.81767	86.061	85.523	86.341	0.73601					29	15	3	0	0	0	0.53748	1	32370	32370		30.637	3.7529	1	3196500	+		22610	24443	16388	16505	22191	22191					-0.013680527703400003
ISEQTGKELLY	11	Unmodified	_ISEQTGKELLY_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY;ACLY|p.A310Lfs*2|1|0.05|ENSG00000131473|chr17:41905578-41905597|GTCTGCTGCTCGCTGGGGGC/-|frameshift_variant;ACLY|p.Y317Mfs*11|1|0.06|ENSG00000131473|chr17:41905576-41905576|A/-|frameshift_variant	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-SECPEP	A375_MHC_IP_R1	1	641.2396850585938	2	640.840268	1279.66598	-0.59778	-0.00038308	0.23835	0.00015274	-0.35943	-0.00023034	640.8404110275466	53.428	0.60913	53.428	53.148	53.758	0					33	11	4	0	0	0	0.0010519	1	19032	19032		164.85	78.519	1	18395000			22611	4335	16389	16506	22192	22192					0.0373361429524266
ISEQTGKELLY	11	Unmodified	_ISEQTGKELLY_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY;ACLY|p.A310Lfs*2|1|0.05|ENSG00000131473|chr17:41905578-41905597|GTCTGCTGCTCGCTGGGGGC/-|frameshift_variant;ACLY|p.Y317Mfs*11|1|0.06|ENSG00000131473|chr17:41905576-41905576|A/-|frameshift_variant	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-SECPEP	A375_MHC_IP_R2	2	641.2395629882812	2	640.840268	1279.66598	-1.2276	-0.00078669	0.49353	0.00031627	-0.73407	-0.00047042	640.8404699235308	52.73	0.96193	53.481	52.931	53.893	0.75105					41	18	4	0	0	0	0.00046796	1	19846	19846		168.29	71.923	1	14037000			22612	4335	16389	16506	22193	22193					0.0373361429524266
ISERHTVGF	9	Unmodified	_ISERHTVGF_					0	0	0			REV__ENST00000492140.1_1_1:120050081-120054424:+|nuORF	REV__ENST00000492140.1_1_1:120050081-120054424:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	523.6326904296875	2	523.274898	1044.53524	-0.86031	-0.00045018	-0.23602	-0.0001235	-1.0963	-0.00057368	523.2748803478494	41.422	0.50925	41.422	41.164	41.674	0					18	9	3	0	0	0	0.53748	1	14259	14259		24.021	0	1	4275400	+		22613	22472	16390	16507	22194	22194					0.014756881576886371
ISERHTVGF	9	Unmodified	_ISERHTVGF_					0	0	0			REV__ENST00000492140.1_1_1:120050081-120054424:+|nuORF	REV__ENST00000492140.1_1_1:120050081-120054424:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	523.6097412109375	2	523.274898	1044.53524	-0.65161	-0.00034097	-0.24598	-0.00012872	-0.89759	-0.00046969	523.2748304786863	40.502	0.45766	41.277	41.082	41.54	0.77451					19	8	3	0	0	0	0.60917	1	14973	14973		25.399	11.493	1	4122900	+		22614	22472	16390	16507	22195	22195					0.014756881576886371
ISERKEIEE	9	Unmodified	_ISERKEIEE_					0	0	0		nc|ENSG00000153064|Q8NDB2-4|BANK1;nc|ENSG00000153064|Q8NDB2-3|BANK1;nc|ENSG00000153064|Q8NDB2-2|BANK1;ENSG00000153064|ENST00000322953|BANK1;BANK1|p.E177K|1|0.45|ENSG00000153064|chr4:101855094-101855094|G/A|missense_variant	nc|ENSG00000153064|Q8NDB2-4|BANK1	nc|ENSG00000153064|Q8NDB2-4|BANK1	MULTI-SECPEP	A375_MHC_IP_R1	1	378.92071533203125	3	378.199666	1131.57717	0.13563	5.1296E-05	-0.68473	-0.00025897	-0.5491	-0.00020767	378.19923767871137	32.477	1.1629	32.477	32.282	33.445	0					46	22	4	0	0	0	0.75519	1	10776	10776		10.151	0	1	7747900			22615	6002	16391	16508	22196	22196					0.016641990555854136
ISERNQDATVY	11	Unmodified	_ISERNQDATVY_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	MULTI-SECPEP	A375_MHC_IP_R1	1	648.7149658203125	2	648.314948	1294.61534	-0.51315	-0.00033268	0.076754	4.9761E-05	-0.43639	-0.00028292	648.3150271843883	27.035	0.25076	27.035	26.928	27.179	0					7	4	2	0	0	0	0.92392	1	8188	8188		17.443	9.8337	1	3039200			22616	5375	16392	16509	22197	22197					-0.02017915029773576
ISERNQDATVY	11	Unmodified	_ISERNQDATVY_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	MULTI-MATCH	A375_MHC_IP_R2	2		2	648.314948	1294.61534	-1.0516	-0.00068175	-0.02112	-1.3693E-05	-1.0727	-0.00069545	648.3146615343093	26.558	0.40606	27.218	27.008	27.414	0.65992	0.091597	-8.7194E-05	NaN	17.443	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2157000			22617	5375	16392	16509							-0.02017915029773576
ISERNVLSF	9	Unmodified	_ISERNVLSF_					0	0	0		ENST00000497433.1_1_1:155699091-155701257:+|nuORF	ENST00000497433.1_1_1:155699091-155701257:+|nuORF	ENST00000497433.1_1_1:155699091-155701257:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1896362304688	2	532.790381	1063.56621	-0.51163	-0.00027259	-0.085333	-4.5464E-05	-0.59697	-0.00031806	532.7902659163339	56.386	0.55858	56.386	56.194	56.753	0					24	10	4	0	0	0	0.61452	1	20181	20181		20.415	2.2682	1	5998800			22618	12744	16393	16510	22198	22198					0.036968414719467546
ISERRRLK	8	Unmodified	_ISERRRLK_					0	0	0		SYT3|p.G479R|1|0.15|ENSG00000213023|chr19:50625532-50625532|C/T|missense_variant	SYT3|p.G479R|1|0.15|ENSG00000213023|chr19:50625532-50625532|C/T|missense_variant	SYT3|p.G479R|1|0.15|ENSG00000213023|chr19:50625532-50625532|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	353.32122802734375	3	353.22448	1056.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.952	1	19.555	19.055	20.055	0.60308								0	0	0	0.16876	1	5704	5704		9.3831	0.63772	1				22619	29285	16394	16511	22199	22199					0.12555051448271115
ISESHPILY	9	Unmodified	_ISESHPILY_					0	0	0		nc|ENSG00000019102|Q96IQ7-2|VSIG2;ENSG00000019102|ENST00000326621|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	MULTI-MSMS	A375_MHC_IP_R2	2	530.1788330078125	2	529.779482	1057.54441	-0.52099	-0.00027601	0.001767	9.361E-07	-0.51923	-0.00027508	529.7793945767507	78.718	1.7265	79.463	79.033	80.759	0.74473					91	33	5	0	0	0	0.060021	1	30008	30008		60.39	12.044	1	130430000			22620	1050	16395	16512	22200	22200					0.017940367233904908
ISETDFRNF	9	Unmodified	_ISETDFRNF_					0	0	0		ENSG00000186340|ENST00000617924|THBS2	ENSG00000186340|ENST00000617924|THBS2	ENSG00000186340|ENST00000617924|THBS2	MULTI-SECPEP	A375_MHC_IP_R2	2	564.7586059570312	2	564.769645	1127.52474	-0.31223	-0.00017634	-2.9915	-0.0016895	-3.3037	-0.0018658	565.2693032304536	86.253	0.30736	86.986	86.896	87.203	0.733					6	5	2	0	0	0	0.73363	1	32829	32829		10.824	1.4765	1	634730			22621	8742	16396	16513	22201	22201					-0.03392339287370305
ISETEKEKY	9	Unmodified	_ISETEKEKY_					0	0	0		tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1	tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1	tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	564.1847534179688	2	563.784961	1125.55537	-0.61123	-0.0003446	0.044466	2.5069E-05	-0.56677	-0.00031953	563.785129393524	36.414	0.30482	36.414	36.236	36.541	0					12	5	3	0	0	0	0.12592	1	12219	12219		46.021	4.1813	1	1820400			22622	29666	16397	16514	22202	22202					-0.002386056929935876
ISETEKEKY	9	Unmodified	_ISETEKEKY_					0	0	0		tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1	tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1	tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	563.784961	1125.55537	-0.71213	-0.00040149	0.11269	6.3534E-05	-0.59943	-0.00033795	563.7850005351766	35.646	0.35453	36.409	36.233	36.587	0.76338	-0.0022762	2.5963E-05	NaN	46.021	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2102000			22623	29666	16397	16514							-0.002386056929935876
ISETKRTEWPR	11	Unmodified	_ISETKRTEWPR_					0	0	0			REV__nc|ENSG00000023228|P28331-3|NDUFS1	REV__nc|ENSG00000023228|P28331-3|NDUFS1	MSMS	A375_MHC_IP_R2	2	701.8836059570312	2	701.875508	1401.73646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.06	1	123.44	122.94	123.94	0.3766								0	0	0	0.16152	1	47239	47239		10.8	1.4164	1		+		22624	16276	16398	16515	22203	22203					0.05166332403564411
ISETRITAY	9	Unmodified	_ISETRITAY_					0	0	0			REV__nc|ENSG00000113621|Q96J42-2|TXNDC15	REV__nc|ENSG00000113621|Q96J42-2|TXNDC15	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6636962890625	2	527.282389	1052.55022	-1.1119	-0.0005863	0.89811	0.00047356	-0.21382	-0.00011274	527.2829922471182	37.134	0.45553	37.905	37.615	38.07	0.7709					15	8	3	0	0	0	0.67483	1	13510	13510		20.454	1.0917	1	2549900	+		22625	17794	16399	16516	22204	22204					0.0260513523503505
ISEVGAITLY	10	Unmodified	_ISEVGAITLY_					0	0	0			REV__ENSG00000139182|ENST00000266546|CLSTN3	REV__ENSG00000139182|ENST00000266546|CLSTN3	MULTI-SECPEP	A375_MHC_IP_R1	1	533.6945190429688	2	533.294965	1064.57538	-0.70042	-0.00037353	-0.10707	-5.7099E-05	-0.80749	-0.00043063	533.2947209709203	76.294	0.45458	76.294	75.966	76.421	0					10	8	2	0	0	0	0.88918	1	27842	27842		8.7454	0	1	1156300	+		22626	19140	16400	16517	22205	22205					0.04567190037619184
ISEVITQDY	9	Unmodified	_ISEVITQDY_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-2|NCOR2;ENST00000474079.1_1_12:124818968-124819707:-|nuORF	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-SECPEP	A375_MHC_IP_R1	1	534.6652221679688	2	534.266404	1066.51826	-0.97852	-0.00052279	0.011858	6.3352E-06	-0.96666	-0.00051646	534.2660307013583	67.256	0.61344	67.256	66.887	67.5	0					21	11	3	0	0	0	0.49205	1	24388	24388		27.629	12.791	1	1886300			22627	9048	16401	16518	22206	22206					-0.012342772387455625
ISEVITQDY	9	Unmodified	_ISEVITQDY_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-2|NCOR2;ENST00000474079.1_1_12:124818968-124819707:-|nuORF	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-SECPEP	A375_MHC_IP_R2	2	534.6660766601562	2	534.266404	1066.51826	-0.8956	-0.00047849	0.18571	9.9218E-05	-0.70989	-0.00037927	534.2661507400434	66.557	0.61241	67.293	67.035	67.648	0.73631					22	11	3	0	0	0	0.53748	1	25229	25229		24.021	1.2843	1	1817300			22628	9048	16401	16518	22207	22207					-0.012342772387455625
ISEWKNLHS	9	Unmodified	_ISEWKNLHS_					0	0	0			REV__ZNF655|p.I401Mfs*6|1|0.49|ENSG00000197343|chr7:99573311-99573318|TCACACAG/-|frameshift_variant	REV__ZNF655|p.I401Mfs*6|1|0.49|ENSG00000197343|chr7:99573311-99573318|TCACACAG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	556.6543579101562	2	557.288005	1112.56146	-1.1651	-0.00064927	0.21873	0.0001219	-0.94633	-0.00052738	557.2882765244316	29.864	0.45424	30.563	30.335	30.79	0.69872					12	8	2	0	0	0	0.62767	1	10481	10481		16.942	0	1	2434500	+		22629	22279	16402	16519	22208	22208					0.009679573292032728
ISEWNKWLCI	10	Unmodified	_ISEWNKWLCI_					0	0	0			REV__ENSG00000175322|ENST00000590202|ZNF519	REV__ENSG00000175322|ENST00000590202|ZNF519	MULTI-SECPEP	A375_MHC_IP_R2	2	430.6103515625	3	431.221636	1290.64308	-0.51509	-0.00022212	-2.5445	-0.0010972	-3.0596	-0.0013193	431.2206731746433	19.433	0.55756	20.036	19.683	20.241	0.60308					17	10	2	0	0	0	0.92832	1	5858	5858		3.0723	0	1	3176700	+		22630	21337	16403	16520	22209	22209					0.00938316696806396
ISEWRKPTNL	10	Unmodified	_ISEWRKPTNL_					0	0	0		ENST00000433206.6_1_17:37076299-37076548:+|nuORF	ENST00000433206.6_1_17:37076299-37076548:+|nuORF	ENST00000433206.6_1_17:37076299-37076548:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	414.65863037109375	3	415.2313	1242.67207	0.54777	0.00022745	-0.49599	-0.00020595	0.051778	2.15E-05	415.2309828620749	44.344	0.35825	44.344	44.165	44.523	0					8	6	2	0	0	0	0.93873	1	15477	15477		7.9454	0.90831	1	1635100			22631	11889	16404	16521	22210	22210					0.06044177317426147
ISEYDNEKP	9	Unmodified	_ISEYDNEKP_					0	0	0			REV__ENSG00000076641|ENST00000220597|PAG1	REV__ENSG00000076641|ENST00000220597|PAG1	MULTI-MSMS	A375_MHC_IP_R2	2	547.709716796875	2	547.753661	1093.49277	-0.71326	-0.00039069	-0.20902	-0.00011449	-0.92228	-0.00050518	547.7535768065424	88.834	0.80712	89.565	89.178	89.985	0.7318					46	15	4	0	0	0	0.38603	1	33827	33827		25.399	7.253	1	14061000	+		22632	16677	16405	16522	22211	22211					-0.05023751761177664
ISEYIEEVF	9	Unmodified	_ISEYIEEVF_					0	0	0		ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	MSMS	A375_MHC_IP_R1	1	564.6585693359375	2	564.776605	1127.53866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.866	1	43.866	43.366	44.366	0								0	0	0	0.15283	1	15277	15277		16.942	2.104	1				22633	5754	16406	16523	22212	22212					-0.020011065789503846
ISFDICSCC	9	Unmodified	_ISFDICSCC_					0	0	0			REV__ENST00000396193.5_2_7:31792725-31792857:-|nuORF	REV__ENST00000396193.5_2_7:31792725-31792857:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	495.15087890625	2	495.690106	989.36566	-0.38812	-0.00019239	-0.51433	-0.00025495	-0.90245	-0.00044734	495.69149900950424	73.589	0.55688	73.589	73.336	73.893	0					11	10	2	0	0	0	0.76187	1	26750	26750		7.2892	1.5288	1	468040	+		22634	24336	16407	16524	22213	22213					-0.12944835503049035
ISFEEYIRV	9	Unmodified	_ISFEEYIRV_					0	0	0		ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MULTI-MSMS	A375_MHC_IP_R2	2	579.70458984375	2	578.305864	1154.59717	-0.22396	-0.00012951	-1.5294	-0.00088449	-1.7534	-0.001014	578.3055005754621	105.94	1.3754	106.7	105.97	107.34	0.75977					65	26	4	0	0	0	0.6324	1	39978	39978		13.042	0.80181	1	9609200			22635	9244	16408	16525	22214	22214					0.026059947861767796
ISFEFRSLL	9	Unmodified	_ISFEFRSLL_					0	0	0		nc|ENSG00000115520|Q9H8M1-2|COQ10B;nc|ENSG00000135469|Q96MF6-3|COQ10A;nc|ENSG00000135469|Q96MF6-2|COQ10A;ENSG00000115520|ENST00000263960|COQ10B;ENSG00000135469|ENST00000308197|COQ10A	nc|ENSG00000115520|Q9H8M1-2|COQ10B	nc|ENSG00000115520|Q9H8M1-2|COQ10B	MULTI-SECPEP	A375_MHC_IP_R2	2	556.71142578125	2	556.310949	1110.60735	-0.82502	-0.00045897	0.54501	0.0003032	-0.28001	-0.00015577	556.3112867639225	98.014	0.5598	98.774	98.487	99.047	0.75977					26	10	3	0	0	0	0.63749	1	37157	37157		16.149	0	1	4964700			22636	3316	16409	16526	22215	22215					0.0564660251143323
ISFFGCALQ	9	Unmodified	_ISFFGCALQ_					0	0	0		ENST00000419087.1_1_1:247782982-247783861:+|nuORF;ENSG00000198452|ENST00000641545|OR14L1P	ENST00000419087.1_1_1:247782982-247783861:+|nuORF	ENST00000419087.1_1_1:247782982-247783861:+|nuORF	MSMS	A375_MHC_IP_R2	2	493.15386962890625	2	493.244221	984.473888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.9	1	107.66	107.16	108.16	0.75977								0	0	0	0.15142	1	40395	40395		19.257	0	1				22637	9271	16410	16527	22216	22216					-0.01896959865939607
ISFGRETDY	9	Unmodified	_ISFGRETDY_					0	0	0			REV__ENSG00000125675|ENST00000620443|GRIA3	REV__ENSG00000125675|ENST00000620443|GRIA3	MULTI-MSMS	A375_MHC_IP_R2	2	544.1560668945312	2	544.256371	1086.49819	-0.96369	-0.0005245	0.17418	9.4801E-05	-0.78951	-0.0004297	544.2567122855862	50.749	1.4208	51.503	50.294	51.715	0.75406					35	27	2	0	0	0	0.64808	1	19071	19071		11.64	0.14559	1	1705500	+		22638	18355	16411	16528	22217	22217					-0.04160028178716857
ISFHCYDGY	9	Unmodified	_ISFHCYDGY_					0	0	0		nc|ENSG00000243649|P00751-2|CFB;ENSG00000243649|ENST00000425368|CFB	nc|ENSG00000243649|P00751-2|CFB	nc|ENSG00000243649|P00751-2|CFB	MULTI-MSMS	A375_MHC_IP_R2	2	552.6957397460938	2	552.726392	1103.43823	-1.1859	-0.00065551	-1.7632	-0.00097458	-2.9492	-0.0016301	552.7254008563604	59.292	0.35252	60.039	59.896	60.249	0.74714					10	6	2	0	0	0	0.63811	1	22439	22439		12.532	0.89125	1	1239400			22639	9810	16412	16529	22218	22218					-0.10935042113601412
ISFHHGWY	8	Unmodified	_ISFHHGWY_					0	0	0			REV__CD1C|p.M302I|1|0.44|ENSG00000158481|chr1:158293228-158293228|G/A|missense_variant	REV__CD1C|p.M302I|1|0.44|ENSG00000158481|chr1:158293228-158293228|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	523.6436767578125	2	523.745776	1045.477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.367	1	61.367	60.867	61.867	0								0	0	0	0.16876	1	22120	22120		15.768	0	1		+		22640	15609	16413	16530	22219	22219					-0.043919486969116406
ISFHLPIN	8	Unmodified	_ISFHLPIN_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	A375_MHC_IP_R1	1	471.1664733886719	2	470.766178	939.517802	-0.34481	-0.00016233	0.6152	0.00028962	0.27039	0.00012729	470.7663672651449	91.832	0.60684	91.832	91.503	92.11	0					15	11	2	0	0	0	0.037539	1	33747	33747		120.45	15.651	1	3210100			22641	7497	16414	16531	22220	22220					0.04562392622699463
ISFHLPIN	8	Unmodified	_ISFHLPIN_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	A375_MHC_IP_R2	2	471.1659240722656	2	470.766178	939.517802	-0.4938	-0.00023246	0.5161	0.00024296	0.022302	1.0499E-05	470.76621333744106	91.007	0.55753	91.742	91.413	91.97	0.7345					16	10	2	0	0	0	0.092435	1	34638	34638		96.285	14.672	1	2401000			22642	7497	16414	16531	22221	22221					0.04562392622699463
ISFHVTLLDDS	11	Unmodified	_ISFHVTLLDDS_					0	0	0		ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	MULTI-MSMS	A375_MHC_IP_R1	1	416.61529541015625	3	416.215316	1245.62412	0.27405	0.00011406	-0.17429	-7.2544E-05	0.099757	4.1521E-05	416.21520081396994	39.4	0.50702	39.4	39.187	39.694	0					19	9	3	0	0	0	0.72585	1	13454	13454		12.856	0.62836	1	8760400			22643	5318	16415	16532	22222	22222					0.011130586067110926
ISFHVTLLDDS	11	Unmodified	_ISFHVTLLDDS_					0	0	0		ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	416.215316	1245.62412	0.27405	0.00011406	-0.17429	-7.2544E-05	0.099757	4.1521E-05	416.21520081396994	39.4	0.50702	39.4	39.187	39.694	0	0.025586	-8.951E-05	NaN	12.856	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8760400			22644	5318	16415	16532							0.011130586067110926
ISFHWSAPF	9	Unmodified	_ISFHWSAPF_					0	0	0			REV__ENST00000523958.5_1_8:23291828-23307413:-|nuORF	REV__ENST00000523958.5_1_8:23291828-23307413:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	546.234375	2	546.269084	1090.52362	-0.4912	-0.00026833	3.342	0.0018257	2.8508	0.0015573	546.2734516834068	57.227	0.91617	57.227	56.855	57.771	0					36	17	4	0	0	0	0.5339	1	20597	20597		18.135	6.4947	1	4258600	+		22645	22272	16416	16533	22223	22223					-0.018025088656486332
ISFIYRWEMTF	11	Unmodified	_ISFIYRWEMTF_					0	0	0		ABCB5|p.G834R|1|0.56|ENSG00000004846|chr7:20723094-20723094|G/A|missense_variant	ABCB5|p.G834R|1|0.56|ENSG00000004846|chr7:20723094-20723094|G/A|missense_variant	ABCB5|p.G834R|1|0.56|ENSG00000004846|chr7:20723094-20723094|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	498.16351318359375	3	498.247962	1491.72206	-0.3756	-0.00018714	0.97379	0.00048519	0.59819	0.00029805	498.248343618835	61.661	0.40805	61.661	61.483	61.891	0					12	7	2	0	0	0	0.73439	1	22207	22207		4.7159	0.87001	1	3284500			22646	10	16417	16534	22224	22224					-0.004134560689635691
ISFKEVGNY	9	Unmodified	_ISFKEVGNY_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-MSMS	A375_MHC_IP_R2	2	529.218017578125	2	528.771657	1055.52876	-0.96239	-0.00050888	-0.28045	-0.00014829	-1.2428	-0.00065718	528.7715915993928	56.675	0.56123	57.425	57.101	57.662	0.75015					22	10	3	0	0	0	0.056914	2	21416	21416;21449		61.602	2.9231	1	5964900			22647	6247	16418	16535	22225;22226	22225					0.003217502063534994
ISFKNLIP	8	Unmodified	_ISFKNLIP_					0	0	0		THEM5|p.R189S|1|0.6|ENSG00000196407|chr1:151848190-151848190|C/G|missense_variant	THEM5|p.R189S|1|0.6|ENSG00000196407|chr1:151848190-151848190|C/G|missense_variant	THEM5|p.R189S|1|0.6|ENSG00000196407|chr1:151848190-151848190|C/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	466.833740234375	2	466.284203	930.553853	-0.36928	-0.00017219	-0.32894	-0.00015338	-0.69822	-0.00032557	466.2841086261389	80.888	0.35596	80.888	80.744	81.1	0					9	6	2	0	0	0	0.74945	1	29506	29506		20.454	1.1966	1	1007900			22648	29337	16419	16536	22227	22227					0.08579849799559724
ISFKNNNEG	9	Unmodified	_ISFKNNNEG_					0	0	0			REV__nc|ENSG00000133863|Q9BXT5|TEX15	REV__nc|ENSG00000133863|Q9BXT5|TEX15	MULTI-SECPEP	A375_MHC_IP_R1	1	511.9884033203125	2	511.748713	1021.48287	-0.49725	-0.00025447	-0.39164	-0.00020042	-0.88889	-0.00045489	511.748565438616	36.181	0.50647	36.181	35.932	36.439	0					13	9	2	0	0	0	0.78348	1	12188	12188		0	0	1	1618200	+		22649	18738	16420	16537	22228	22228					-0.02700894975907886
ISFNNFSQIP	10	Unmodified	_ISFNNFSQIP_					0	0	0		nc|ENSG00000040199|Q6ZVD8-2|PHLPP2;ENSG00000040199|ENST00000568954|PHLPP2;nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;ENST00000538126.5_1_16:71712656-71757677:-|nuORF	nc|ENSG00000040199|Q6ZVD8-2|PHLPP2	nc|ENSG00000040199|Q6ZVD8-2|PHLPP2	MULTI-MSMS	A375_MHC_IP_R2	2	390.12628173828125	3	389.532868	1165.57677	-0.74985	-0.00029209	0.74218	0.0002891	-0.0076664	-2.9863E-06	389.53312934492743	36.856	0.55817	37.627	37.308	37.867	0.7709					25	10	4	0	0	0	0.70442	1	13428	13428		10.315	0.77126	1	10854000			22650	1163	16421	16538	22229	22229					0.0006082412637624657
ISFNSTLLY	9	Unmodified	_ISFNSTLLY_					0	0	0			REV__ENSG00000185900|ENST00000331373|POMK	REV__ENSG00000185900|ENST00000331373|POMK	MULTI-SECPEP	A375_MHC_IP_R1	1	529.681640625	2	529.281857	1056.54916	-0.56364	-0.00029832	-0.047192	-2.4978E-05	-0.61083	-0.0003233	529.2820618945404	57.782	0.65961	57.782	57.467	58.126	0					25	12	3	0	0	0	0.28216	1	20750	20750		34.402	1.616	1	3106800	+		22651	21929	16422	16539	22230	22230					0.02314920866160719
ISFPDPKML	9	Unmodified	_ISFPDPKML_					0	0	0		nc|ENSG00000113407|P26639-2|TARS1;ENSG00000113407|ENST00000265112|TARS1;ENST00000504698.1_1_5:33456142-33459991:+|nuORF	nc|ENSG00000113407|P26639-2|TARS1	nc|ENSG00000113407|P26639-2|TARS1	MULTI-MSMS	A375_MHC_IP_R1	1	524.6810302734375	2	524.280803	1046.54705	-0.50605	-0.00026531	0.60589	0.00031766	0.099849	5.2349E-05	524.2808284057946	95.967	1.0127	95.967	95.261	96.274	0					35	19	3	0	0	0	0.066859	1	35283	35283		57.722	2.9484	1	2815900			22652	3150	16423	16540	22231	22231					0.025641688566793164
ISFPDPKML	9	Unmodified	_ISFPDPKML_					0	0	0		nc|ENSG00000113407|P26639-2|TARS1;ENSG00000113407|ENST00000265112|TARS1;ENST00000504698.1_1_5:33456142-33459991:+|nuORF	nc|ENSG00000113407|P26639-2|TARS1	nc|ENSG00000113407|P26639-2|TARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	524.1666259765625	2	524.280803	1046.54705	-0.27734	-0.0001454	0.78924	0.00041378	0.5119	0.00026838	524.2808261628641	95.17	0.81388	95.92	95.533	96.347	0.75045					31	15	3	0	0	0	0.20451	1	36158	36158		57.722	11.701	1	3362200			22653	3150	16423	16540	22232	22232					0.025641688566793164
ISFPLSHHF	9	Unmodified	_ISFPLSHHF_					0	0	0			REV__ENSG00000054690|ENST00000329153|PLEKHH1	REV__ENSG00000054690|ENST00000329153|PLEKHH1	MULTI-MSMS	A375_MHC_IP_R1	1	362.59051513671875	3	362.190665	1083.55016	0.18452	6.6833E-05	-0.16364	-5.927E-05	0.020882	7.5633E-06	362.19051185098664	57.441	0.56026	57.441	57.211	57.771	0					19	10	3	0	0	0	0.69317	1	20666	20666		7.609	0.9855	1	2219800	+		22654	16408	16424	16541	22233	22233					0.011731800256939096
ISFQHLQNL	9	Unmodified	_ISFQHLQNL_					0	0	0		ENSG00000197147|ENST00000330947|LRRC8B	ENSG00000197147|ENST00000330947|LRRC8B	ENSG00000197147|ENST00000330947|LRRC8B	MULTI-SECPEP	A375_MHC_IP_R1	1	549.9793701171875	2	550.298373	1098.58219	-0.54093	-0.00029767	-0.3282	-0.00018061	-0.86912	-0.00047828	550.2985351904774	74.74	0.65851	74.74	74.502	75.16	0					16	12	2	0	0	0	0.56537	1	27142	27142		17.113	0	1	719330			22655	9122	16425	16542	22234	22234					0.03684547708826358
ISFQNENVF	9	Unmodified	_ISFQNENVF_					0	0	0		nc|ENSG00000275243|A0A087WV62|TRBV16	nc|ENSG00000275243|A0A087WV62|TRBV16	nc|ENSG00000275243|A0A087WV62|TRBV16	MULTI-MSMS	A375_MHC_IP_R1	1	549.6611938476562	2	549.266739	1096.51892	-0.88191	-0.0004844	-0.97923	-0.00053786	-1.8611	-0.0010223	549.2670574304445	67.526	1.068	67.526	66.887	67.955	0					26	20	2	0	0	0	0.2487	1	24628	24628		34.402	3.7652	1	3566900			22656	14940	16426	16543	22235	22235					-0.025474377990576613
ISFQYEEV	8	Unmodified	_ISFQYEEV_					0	0	0			REV__ENST00000433031.1_1_7:57217779-57217833:-|nuORF	REV__ENST00000433031.1_1_7:57217779-57217833:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.98016357421875	2	507.742565	1013.47058	-0.33911	-0.00017218	-2.9896	-0.0015179	-3.3287	-0.0016901	508.2423715997298	55.788	0.15412	55.788	55.687	55.841	0					4	2	2	0	0	0	0.90224	1	19956	19956		19.439	7.7987	1	555130	+		22657	24723	16427	16544	22236	22236					-0.03561931438946431
ISFSQLPPPG	10	Unmodified	_ISFSQLPPPG_					0	0	0		ENST00000558383.1_1_15:45392246-45393102:-|nuORF	ENST00000558383.1_1_15:45392246-45393102:-|nuORF	ENST00000558383.1_1_15:45392246-45393102:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	522.1802368164062	2	521.782025	1041.5495	-0.3141	-0.00016389	-2.3376	-0.0012197	-2.6517	-0.0013836	521.7806139704572	126.08	0.50402	126.08	125.9	126.41	0					12	9	2	0	0	0	0.33054	1	48107	48107		47.749	14.304	1	31639000			22658	13466	16428	16545	22237	22237					0.030383405859765844
ISFSQLPPPG	10	Unmodified	_ISFSQLPPPG_					0	0	0		ENST00000558383.1_1_15:45392246-45393102:-|nuORF	ENST00000558383.1_1_15:45392246-45393102:-|nuORF	ENST00000558383.1_1_15:45392246-45393102:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	521.782025	1041.5495	-0.55751	-0.0002909	-3.0568	-0.001595	-3.6143	-0.0018859	521.7802873173844	125.55	0.50409	125.85	125.72	126.23	0.2951	-0.11582	-0.00010135	NaN	47.749	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36157000			22659	13466	16428	16545							0.030383405859765844
ISFTSFSKS	9	Unmodified	_ISFTSFSKS_					0	0	0			REV__ZNF208|p.G1119S|1|0.39|ENSG00000160321|chr19:21971679-21971679|C/T|missense_variant	REV__ZNF208|p.G1119S|1|0.39|ENSG00000160321|chr19:21971679-21971679|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	502.1661071777344	2	502.258382	1002.50221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.216	1	55.216	54.716	55.716	0								0	0	0	0.15468	1	19741	19741		13.906	2.2658	1		+		22660	29029	16429	16546	22238	22238					0.0010606131500026095
ISFVFERRY	9	Unmodified	_ISFVFERRY_					0	0	0		ENST00000229769.2_1_6:35434224-35434398:+|nuORF	ENST00000229769.2_1_6:35434224-35434398:+|nuORF	ENST00000229769.2_1_6:35434224-35434398:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	609.2265625	2	608.827298	1215.64004	-0.27059	-0.00016474	0.25932	0.00015788	-0.01127	-6.8613E-06	608.8269931949025	101.27	0.30473	101.27	101.14	101.45	0					7	5	2	0	0	0	0.76187	1	37253	37253		3.9444	3.5938	1	1098400			22661	10136	16430	16547	22239	22239					0.04084809634287012
ISFVRKIRKL	10	Unmodified	_ISFVRKIRKL_					0	0	0		tr|U7SH84|U7SH84_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02361PE=4SV=1	tr|U7SH84|U7SH84_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02361PE=4SV=1	tr|U7SH84|U7SH84_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02361PE=4SV=1	MSMS	A375_MHC_IP_R2	2	630.70751953125	2	630.419157	1258.82376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.81	1	125.14	124.64	125.64	0.32969								0	0	0	0.15591	1	48397	48397		1.6526	0.17072	1				22662	29417	16431	16548	22240	22240					0.20470203135801057
ISFVVLISSY	10	Unmodified	_ISFVVLISSY_					0	0	0		nc|ENSG00000196383|P0C623|OR4Q2	nc|ENSG00000196383|P0C623|OR4Q2	nc|ENSG00000196383|P0C623|OR4Q2	MULTI-SECPEP	A375_MHC_IP_R1	1	376.9501647949219	3	376.549747	1126.62741	0.46707	0.00017588	0.97608	0.00036754	1.4432	0.00054342	376.5500517140379	40.602	0.45654	40.602	40.406	40.863	0					12	8	2	0	0	0	0.90853	1	14017	14017		3.5871	1.0886	1	3698200			22663	14836	16432	16549	22241	22241					0.06916353451379109
ISFWISLDW	9	Unmodified	_ISFWISLDW_					0	0	0		L1PB1_dup12829|chr21:46585548-46587567:+|1.182533549073013|0.3950341382787979|1.58|465.0|86|1|anti-sense	L1PB1_dup12829|chr21:46585548-46587567:+|1.182533549073013|0.3950341382787979|1.58|465.0|86|1|anti-sense	L1PB1_dup12829|chr21:46585548-46587567:+|1.182533549073013|0.3950341382787979|1.58|465.0|86|1|anti-sense	MULTI-MSMS	A375_MHC_IP_R2	2	583.805908203125	2	583.797675	1165.5808	-0.34562	-0.00020177	-1.7505	-0.001022	-2.0961	-0.0012237	583.7969735011353	91.537	0.91434	92.271	91.666	92.581	0.73451					40	17	3	0	0	0	0.64971	1	34742	34742		11.64	0.14559	1	8752000			22664	14273	16433	16550	22242	22242					0.004629136200719586
ISFYLVSPDQD	11	Unmodified	_ISFYLVSPDQD_					0	0	0			REV__ENSG00000094631|ENST00000334136|HDAC6	REV__ENSG00000094631|ENST00000334136|HDAC6	MSMS	A375_MHC_IP_R1	1	642.263427734375	2	642.311343	1282.60813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.706	1	97.706	97.206	98.206	0								0	0	0	0.16203	1	35896	35896		8.1555	0	1		+		22665	16984	16434	16551	22243	22243					-0.021866476301738658
ISGDDDLFKY	10	Unmodified	_ISGDDDLFKY_					0	0	0			REV__ENSG00000166012|ENST00000448108|TAF1D	REV__ENSG00000166012|ENST00000448108|TAF1D	MSMS	A375_MHC_IP_R2	2	586.7160034179688	2	586.777136	1171.53972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.425	1	49.182	48.682	49.682	0.75737								0	0	0	0.15038	1	18184	18184		17.113	0.96379	1		+		22666	20644	16435	16552	22244	22244					-0.03918892210049307
ISGDDNIYY	9	Unmodified	_ISGDDNIYY_					0	0	0			REV__STPG2|p.H101Y|1|0.4|ENSG00000163116|chr4:98128514-98128514|G/A|missense_variant	REV__STPG2|p.H101Y|1|0.4|ENSG00000163116|chr4:98128514-98128514|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	531.1751708984375	2	530.235104	1058.45566	-0.58861	-0.0003121	-0.22993	-0.00012192	-0.81854	-0.00043402	530.2348827223724	54.956	1.1712	54.956	54.567	55.738	0					42	22	3	0	0	0	0.64808	1	19554	19554		11.64	0	1	13473000	+		22667	28061	16436	16553	22245	22245					-0.0712342330696174
ISGDDNIYY	9	Unmodified	_ISGDDNIYY_					0	0	0			REV__STPG2|p.H101Y|1|0.4|ENSG00000163116|chr4:98128514-98128514|G/A|missense_variant	REV__STPG2|p.H101Y|1|0.4|ENSG00000163116|chr4:98128514-98128514|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	530.2135009765625	2	530.235104	1058.45566	-0.94697	-0.00050211	-0.16802	-8.909E-05	-1.115	-0.0005912	530.2351837721649	58.689	0.60972	59.437	59.083	59.692	0.74812					14	11	2	0	0	0	0.55818	1	22199	22199		16.942	0	1	1344700	+		22668	28061	16436	16553	22246	22246					-0.0712342330696174
ISGDTGVIH	9	Unmodified	_ISGDTGVIH_					0	0	0		nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	MULTI-MSMS	A375_MHC_IP_R1	1	450.13519287109375	2	449.735074	897.455596	0.078316	3.5221E-05	-0.068119	-3.0635E-05	0.010197	4.5861E-06	449.7349797229635	44.285	0.61521	44.285	44.061	44.676	0					25	11	4	0	0	0	0.43185	1	15544	15544		23.148	6.2061	1	8357800			22669	6585	16437	16554	22247	22247					0.0027662148370382056
ISGDYYSVS	9	Unmodified	_ISGDYYSVS_					0	0	0		tr|U7SPB0|U7SPB0_FUSNUPhosphatidylserinedecarboxylaseproenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=psdPE=3SV=1	tr|U7SPB0|U7SPB0_FUSNUPhosphatidylserinedecarboxylaseproenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=psdPE=3SV=1	tr|U7SPB0|U7SPB0_FUSNUPhosphatidylserinedecarboxylaseproenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=psdPE=3SV=1	MSMS	A375_MHC_IP_R1	1	495.68646240234375	2	495.724372	989.434192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.747	1	88.747	88.247	89.247	0								0	0	0	0.15283	1	32587	32587		16.942	2.3606	1				22670	29578	16438	16555	22248	22248					-0.06094808335660673
ISGGLRGLQ	9	Unmodified	_ISGGLRGLQ_					0	0	0		tr|U7SKH4|U7SKH4_FUSNUCys-tRNA(Pro)/Cys-tRNA(Cys)deacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01993PE=3SV=1	tr|U7SKH4|U7SKH4_FUSNUCys-tRNA(Pro)/Cys-tRNA(Cys)deacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01993PE=3SV=1	tr|U7SKH4|U7SKH4_FUSNUCys-tRNA(Pro)/Cys-tRNA(Cys)deacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01993PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	451.12646484375	2	450.766709	899.518865	-0.077077	-3.4744E-05	-0.77039	-0.00034727	-0.84747	-0.00038201	450.7664972152753	43.87	0.45366	44.639	44.43	44.883	0.76909					13	8	2	0	0	0	0.60917	1	16306	16306		19.257	3.4098	1	1846200			22671	29472	16439	16556	22249	22249					0.06508606991610577
ISGHMWEF	8	Unmodified	_ISGHMWEF_					0	0	0		ENST00000295404.9_1_19:50200719-50213852:+|nuORF;ENST00000599023.5_1_19:50195509-50213852:+|nuORF;nc|ENSG00000169169|Q8TCG5-3|CPT1C;nc|ENSG00000169169|Q8TCG5-2|CPT1C;ENSG00000169169|ENST00000598293|CPT1C;CPT1C|p.P476L|1|0.34|ENSG00000169169|chr19:49707601-49707601|C/T|missense_variant	ENST00000295404.9_1_19:50200719-50213852:+|nuORF	ENST00000295404.9_1_19:50200719-50213852:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	503.6477966308594	2	503.726195	1005.43784	-0.62086	-0.00031274	1.5108	0.00076102	0.88992	0.00044827	504.2273369822921	73.26	0.15376	73.996	73.887	74.041	0.73541					4	2	2	0	0	0	0.94479	1	27806	27806		8.5933	0	1	270450			22672	7386	16440	16557	22250	22250					-0.06466417042793182
ISGICNTYLF	10	Unmodified	_ISGICNTYLF_					0	0	0			REV__ENST00000321250.12_1_8:29965226-29965448:+|nuORF	REV__ENST00000321250.12_1_8:29965226-29965448:+|nuORF	MSMS	A375_MHC_IP_R2	2	565.726806640625	2	565.781167	1129.54778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.808	1	55.559	55.059	56.059	0.75075								0	0	0	0.15308	1	20691	20691		10.824	2.2306	1		+		22673	23567	16441	16558	22251	22251					-0.011810364942903107
ISGIHSTLTRV	11	Unmodified	_ISGIHSTLTRV_					0	0	0			REV__ENST00000389879.9_1_14:99977269-99977461:+|nuORF	REV__ENST00000389879.9_1_14:99977269-99977461:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	395.97607421875	3	395.2313	1182.67207	-0.21043	-8.3168E-05	1.3386	0.00052905	1.1282	0.00044589	395.2318163824468	19.296	0.43628	19.296	19.238	19.674	0					19	8	4	0	0	0	0.99331	1	4697	4697		1.1098	0	1	12597000	+		22674	24257	16442	16559	22252	22252					0.08804177317392714
ISGIPTEEIL	10	Unmodified	_ISGIPTEEIL_					0	0	0			REV__ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant	REV__ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	358.2610778808594	3	357.869257	1070.58594	-0.42809	-0.0001532	-0.30012	-0.0001074	-0.72822	-0.00026061	357.8691346637607	34.604	0.35726	35.367	35.068	35.425	0.76338					10	6	2	0	0	0	0.8125	1	12479	12479		20.581	1.8597	1	1088200	+		22675	15400	16443	16560	22253	22253					0.05347172692040658
ISGKAAIAV	9	Unmodified	_ISGKAAIAV_					0	0	0			REV__nc|ENSG00000132294|Q14156-3|EFR3A	REV__nc|ENSG00000132294|Q14156-3|EFR3A	MULTI-MSMS	A375_MHC_IP_R2	2	415.2866516113281	2	415.260728	828.506903	-0.41622	-0.00017284	-0.21422	-8.8959E-05	-0.63044	-0.0002618	415.2605672546757	56.581	0.40943	57.331	57.152	57.561	0.75015					10	7	2	0	0	0	0.58047	1	21325	21325		15.847	1.0089	1	1733900	+		22676	18644	16444	16561	22254	22254					0.08578990248417995
ISGKAAIAV	9	Unmodified	_ISGKAAIAV_					0	0	0			REV__nc|ENSG00000132294|Q14156-3|EFR3A	REV__nc|ENSG00000132294|Q14156-3|EFR3A	MULTI-MATCH	A375_MHC_IP_R1	1		2	415.260728	828.506903	0.30823	0.00012799	-0.29987	-0.00012452	0.0083599	3.4715E-06	415.26053807224594	57.605	0.5588	57.605	57.415	57.974	0	0.13721	-2.7625E-05	NaN	15.847	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1199600	+		22677	18644	16444	16561							0.08578990248417995
ISGKAAIAV	9	Unmodified	_ISGKAAIAV_					0	0	0			REV__nc|ENSG00000132294|Q14156-3|EFR3A	REV__nc|ENSG00000132294|Q14156-3|EFR3A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	415.260728	828.506903	-0.41622	-0.00017284	-0.21422	-8.8959E-05	-0.63044	-0.0002618	415.2605672546757	56.581	0.40943	57.331	57.152	57.561	0.75015	-0.13721	4.3504E-05	NaN	15.847	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1733900	+		22678	18644	16444	16561							0.08578990248417995
ISGKNENNINE	11	Unmodified	_ISGKNENNINE_					0	0	0			REV__nc|ENSG00000130997|Q7Z5Q5-3|POLN	REV__nc|ENSG00000130997|Q7Z5Q5-3|POLN	MSMS	A375_MHC_IP_R1	1	616.1981201171875	2	616.299298	1230.58404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.771	1	46.771	46.271	47.271	0								0	0	0	0.15837	1	16427	16427		15.248	4.4246	1		+		22679	18579	16445	16562	22255	22255					-0.022024880638582545
ISGKRLRFI	9	Unmodified	_ISGKRLRFI_					0	0	0			REV__ENST00000492923.1_1_9:5462961-5465689:+|nuORF	REV__ENST00000492923.1_1_9:5462961-5465689:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	364.2573547363281	3	363.901226	1088.68185	0.13714	4.9905E-05	-0.4041	-0.00014705	-0.26696	-9.7149E-05	363.9009611880049	39.466	0.20124	39.466	39.34	39.541	0					5	3	2	0	0	0	0.6894	1	13465	13465		7.9454	0.46833	1	1368200	+		22680	25418	16446	16563	22256	22256					0.14105410113461403
ISGKRLRFI	9	Unmodified	_ISGKRLRFI_					0	0	0			REV__ENST00000492923.1_1_9:5462961-5465689:+|nuORF	REV__ENST00000492923.1_1_9:5462961-5465689:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	363.901226	1088.68185	0.13714	4.9905E-05	-0.4041	-0.00014705	-0.26696	-9.7149E-05	363.9009611880049	39.466	0.20124	39.466	39.34	39.541	0	0.12054	0.00011105	NaN	7.9454	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1368200	+		22681	25418	16446	16563							0.14105410113461403
ISGQHLAAVE	10	Unmodified	_ISGQHLAAVE_					0	0	0		ENST00000436123.1_1_3:24138442-24138616:-|nuORF	ENST00000436123.1_1_3:24138442-24138616:-|nuORF	ENST00000436123.1_1_3:24138442-24138616:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	512.7005615234375	2	512.774731	1023.53491	-0.38962	-0.00019979	-0.15489	-7.9423E-05	-0.54451	-0.00027921	512.7746383648557	40.631	1.0124	40.631	40.304	41.317	0					46	19	3	0	0	0	0.55789	1	13883	13883		24.021	1.2843	1	67396000			22682	11924	16447	16564	22257	22257					0.024082684378413433
ISGQITRKFF	10	Unmodified	_ISGQITRKFF_					0	0	0			REV__nc|ENSG00000173153|P11474-2|ESRRA	REV__nc|ENSG00000173153|P11474-2|ESRRA	MULTI-SECPEP	A375_MHC_IP_R1	1	598.7030029296875	2	598.842948	1195.67134	-0.56504	-0.00033837	-0.60789	-0.00036403	-1.1729	-0.0007024	598.8423007791064	66.175	0.45692	66.175	65.921	66.377	0					12	8	2	0	0	0	0.72086	1	24006	24006		24.021	16.412	1	718260	+		22683	21197	16448	16565	22258	22258					0.08133382668347622
ISGREVFEF	9	Unmodified	_ISGREVFEF_					0	0	0		ENSG00000065548|ENST00000337859|ZC3H15;nc|ENSG00000065548|Q8WU90-2|ZC3H15;ZC3H15|p.R298C|2|0.44|ENSG00000065548|chr2:186505767-186505767|C/T|missense_variant	ENSG00000065548|ENST00000337859|ZC3H15	ENSG00000065548|ENST00000337859|ZC3H15	MULTI-MSMS	A375_MHC_IP_R2	2	362.25384521484375	3	361.85383	1082.53966	-0.19882	-7.1942E-05	0.19427	7.0298E-05	-0.0045448	-1.6446E-06	361.85375337605836	32.266	0.40807	33.003	32.857	33.265	0.73691					13	7	2	0	0	0	0.60101	1	11501	11501		10.151	1.7063	1	2586700			22684	1388	16449	16566	22259	22259					0.0016915258061089844
ISGRKNQPL	9	Unmodified	_ISGRKNQPL_					0	0	0		nc|ENSG00000140750|Q68EM7-4|ARHGAP17	nc|ENSG00000140750|Q68EM7-4|ARHGAP17	nc|ENSG00000140750|Q68EM7-4|ARHGAP17	MULTI-SECPEP	A375_MHC_IP_R2	2	507.1981506347656	2	506.79854	1011.58253	-1.0528	-0.00053355	-1.4397	-0.00072965	-2.4925	-0.0012632	506.7984553369782	24.381	0.81213	25.025	24.602	25.414	0.64368					26	15	4	0	0	0	0.53748	1	8023	8023		24.021	1.2843	1	18221000			22685	14643	16450	16567	22260	22260					0.0771996742871579
ISGRLIVVRVP	11	Unmodified	_ISGRLIVVRVP_					0	0	0			REV__OPLAH|p.P1062L|1|0.37|ENSG00000178814|chr8:144052567-144052567|G/A|missense_variant	REV__OPLAH|p.P1062L|1|0.37|ENSG00000178814|chr8:144052567-144052567|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	604.7420043945312	2	604.895515	1207.77648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.822	1	99.822	99.322	100.32	0								0	0	0	0.16297	1	36678	36678		3.2813	0.28607	1		+		22686	27643	16451	16568	22261	22261					0.18089923864818047
ISGRWKLLLRY	11	Unmodified	_ISGRWKLLLRY_					0	0	0			REV__BEST3|p.H18Y|1|0.82|ENSG00000127325|chr12:69697747-69697747|G/A|missense_variant	REV__BEST3|p.H18Y|1|0.82|ENSG00000127325|chr12:69697747-69697747|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	702.9135131835938	2	702.927346	1403.84014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.27	1	124.27	123.77	124.77	0								0	0	0	0.16124	1	46738	46738		12.241	6.5088	1		+		22687	15508	16452	16569	22262	22262					0.15437284301879117
ISGSIFQLLV	10	Unmodified	_ISGSIFQLLV_					0	0	0			REV__nc|ENSG00000112282|Q9ULK4-2|MED23	REV__nc|ENSG00000112282|Q9ULK4-2|MED23	MULTI-SECPEP	A375_MHC_IP_R2	2	539.22021484375	2	538.82115	1075.62775	-0.76463	-0.000412	-0.083178	-4.4818E-05	-0.84781	-0.00045682	538.8211108747851	87.46	0.65623	88.192	87.965	88.621	0.7318					20	12	2	0	0	0	0.1039	1	33266	33266		55.503	0	1	5233400	+		22688	17723	16453	16570	22263	22263					0.0929577317122039
ISGYFLEKR	9	Unmodified	_ISGYFLEKR_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R1	1	371.941650390625	3	371.541475	1111.60259	0.29436	0.00010937	0.0059332	2.2044E-06	0.30029	0.00011157	371.5414814703071	64.411	0.55928	64.411	64.141	64.7	0					28	10	3	0	0	0	0.75032	1	23289	23289		2.4985	0	1	5225700			22689	6151;14694	16454	16571	22264	22264					0.05125718368640264
ISHDACFAQLF	11	Unmodified	_ISHDACFAQLF_					0	0	0		ENSG00000176893|ENST00000641926|OR51G2	ENSG00000176893|ENST00000641926|OR51G2	ENSG00000176893|ENST00000641926|OR51G2	MSMS	A375_MHC_IP_R2	2	626.6937255859375	2	626.294973	1250.57539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.779	1	61.524	61.024	62.024	0.74503								0	0	0	0.16191	1	23020	23020		8.7454	0.15213	1				22690	8038	16455	16572	22265	22265					-0.03987133234045359
ISHDELMVHEE	11	Unmodified	_ISHDELMVHEE_					0	0	0		ZNF148|p.Y184Sfs*12|1|0.33|ENSG00000163848|chr3:125279155-125279156|AT/-|frameshift_variant;ENSG00000163848|ENST00000360647|ZNF148	ZNF148|p.Y184Sfs*12|1|0.33|ENSG00000163848|chr3:125279155-125279156|AT/-|frameshift_variant	ZNF148|p.Y184Sfs*12|1|0.33|ENSG00000163848|chr3:125279155-125279156|AT/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	669.8029174804688	2	669.803359	1337.59217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.32	1	122.32	121.82	122.82	0								0	0	0	0.16191	1	45507	45507		8.7454	2.5396	1				22691	6734	16456	16573	22266	22266					-0.0631267713872603
ISHDRPVRGRR	11	Unmodified	_ISHDRPVRGRR_					0	0	0			REV__ENSG00000205126|ENST00000378832|ACCSL	REV__ENSG00000205126|ENST00000378832|ACCSL	MULTI-MSMS	A375_MHC_IP_R2	2	675.2864379882812	2	674.887075	1347.7596	-0.7108	-0.00047971	-0.92382	-0.00062347	-1.6346	-0.0011032	674.8862879091797	130.62	1.2175	130.83	130.1	131.31	0.2142					42	23	2	0	0	0	0.73238	1	51144	51144		6.6304	3.0339	1	15427000	+		22692	22559	16457	16574	22267	22267					0.09962816031543298
ISHEDGTLW	9	Unmodified	_ISHEDGTLW_					0	0	0		nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-SECPEP	A375_MHC_IP_R1	1	529.6507568359375	2	529.251089	1056.48762	-0.52443	-0.00027755	-1.0088	-0.00053393	-1.5333	-0.00081148	529.250560984629	55.543	0.56065	55.543	55.126	55.687	0					16	10	2	0	0	0	0.52144	1	19912	19912		30.225	1.738	1	1420300			22693	2039	16458	16575	22268	22268					-0.038360108331289666
ISHEDYPAD	9	Unmodified	_ISHEDYPAD_					0	0	0		nc|ENSG00000174453|B2RUY7-2|VWC2L;ENSG00000174453|ENST00000312504|VWC2L	nc|ENSG00000174453|B2RUY7-2|VWC2L	nc|ENSG00000174453|B2RUY7-2|VWC2L	MULTI-MSMS	A375_MHC_IP_R2	2	524.2080078125	2	523.724904	1045.43525	-0.71213	-0.00037296	-1.2741	-0.0006673	-1.9863	-0.0010403	523.7242356948977	65.967	1.4282	66.706	66.018	67.446	0.73811					43	27	2	0	0	0	0.6898	1	24870	24870		7.9102	2.1497	1	2273800			22694	7883	16459	16576	22269	22269					-0.08564593966752909
ISHEKLEKA	9	Unmodified	_ISHEKLEKA_					0	0	0		ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-SECPEP	A375_MHC_IP_R2	2	528.197265625	2	527.798206	1053.58186	-0.69567	-0.00036718	-0.53715	-0.00028351	-1.2328	-0.00065068	527.7978988269425	28.124	0.35551	28.802	28.604	28.96	0.67857					11	6	2	0	0	0	0.76827	1	9714	9714		6.7232	0	1	3030700			22695	3509	16460	16577	22270	22270					0.05721127988999797
ISHFQWRQHIR	11	Unmodified	_ISHFQWRQHIR_					0	0	0			REV__ENSG00000174373|ENST00000680220|RALGAPA1	REV__ENSG00000174373|ENST00000680220|RALGAPA1	MSMS	A375_MHC_IP_R1	1	754.4119262695312	2	754.405101	1506.79565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.74	1	123.74	123.24	124.24	0								0	0	0	0.16213	1	46303	46303		7.609	0	1		+		22696	21281	16461	16578	22271	22271					0.06252273208406223
ISHGAAEMAEI	11	Unmodified	_ISHGAAEMAEI_					0	0	0			REV__ENST00000493891.5_1_1:60103921-60223658:+|nuORF	REV__ENST00000493891.5_1_1:60103921-60223658:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	564.7026977539062	2	564.771331	1127.52811	0.023932	1.3516E-05	-0.048194	-2.7219E-05	-0.024262	-1.3703E-05	564.7712602178568	126.84	0.40472	126.84	126.61	127.01	0					13	7	3	0	0	0	0.43635	1	48458	48458		36.127	3.8215	1	24024000	+		22697	21144	16462	16579	22272	22272					-0.030554125050457515
ISHINLKFI	9	Unmodified	_ISHINLKFI_					0	0	0			REV__DNMBP|p.S990F|1|0.3|ENSG00000107554|chr10:99896349-99896349|G/A|missense_variant	REV__DNMBP|p.S990F|1|0.3|ENSG00000107554|chr10:99896349-99896349|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	362.62188720703125	3	362.221965	1083.64407	-0.17749	-6.4291E-05	-0.37304	-0.00013512	-0.55053	-0.00019941	362.2217785478659	31.383	0.51112	32.102	31.872	32.383	0.71857					13	9	2	0	0	0	0.46465	1	11122	11122		21.537	4.0943	1	3935200	+		22698	16024	16463	16580	22273	22273					0.10558899127977384
ISHINLKFI	9	Unmodified	_ISHINLKFI_					0	0	0			REV__DNMBP|p.S990F|1|0.3|ENSG00000107554|chr10:99896349-99896349|G/A|missense_variant	REV__DNMBP|p.S990F|1|0.3|ENSG00000107554|chr10:99896349-99896349|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	362.221965	1083.64407	-0.17749	-6.4291E-05	-0.37304	-0.00013512	-0.55053	-0.00019941	362.2217785478659	31.383	0.51112	32.102	31.872	32.383	0.71857	-0.067247	0.00012116	NaN	21.537	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3935200	+		22699	16024	16463	16580							0.10558899127977384
ISHIPASRW	9	Unmodified	_ISHIPASRW_					0	0	0		ENST00000470876.1_1_5:133900168-133909634:+|nuORF;nc|ENSG00000043143|Q9NQC1-3|JADE2;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;ENSG00000043143|ENST00000681547|JADE2	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	356.5978698730469	3	356.197931	1065.57196	-0.45154	-0.00016084	0.065946	2.349E-05	-0.38559	-0.00013735	356.19792303156106	35.284	0.45532	36.048	35.727	36.183	0.76338					19	8	3	0	0	0	0.57177	1	12775	12775		16.275	4.0339	1	6494000			22700	1179	16464	16581	22274	22274					0.04179984774282275
ISHIPASRW	9	Unmodified	_ISHIPASRW_					0	0	0		ENST00000470876.1_1_5:133900168-133909634:+|nuORF;nc|ENSG00000043143|Q9NQC1-3|JADE2;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;ENSG00000043143|ENST00000681547|JADE2	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	356.197931	1065.57196	-0.45154	-0.00016084	0.065946	2.349E-05	-0.38559	-0.00013735	356.19792303156106	35.284	0.45532	36.048	35.727	36.183	0.76338	-0.081255	0.00037052	NaN	16.275	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6494000			22701	1179	16464	16581							0.04179984774282275
ISHLETHLGF	10	Unmodified	_ISHLETHLGF_					0	0	0		nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1;ENSG00000179981|ENST00000580243|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MULTI-SECPEP	A375_MHC_IP_R2	2	385.933837890625	3	385.204862	1152.59276	-0.42183	-0.00016249	0.46617	0.00017957	0.044336	1.7079E-05	385.20496377055656	37.624	0.51029	38.398	38.023	38.533	0.77389					13	9	2	0	0	0	0.83425	1	13734	13734		24.882	7.4389	1	2189100			22702	8270	16465	16582	22275	22275					0.022565303632973155
ISHLGGPLY	9	Unmodified	_ISHLGGPLY_					0	0	0			REV__CNFN|p.R73C|1|0.78|ENSG00000105427|chr19:42387372-42387372|G/A|missense_variant	REV__CNFN|p.R73C|1|0.78|ENSG00000105427|chr19:42387372-42387372|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	478.1114807128906	2	478.763635	955.512717	-0.28512	-0.0001365	-2.8119	-0.0013463	-3.0971	-0.0014828	478.7617263200119	37.474	0.45993	37.474	37.198	37.658	0					16	8	2	0	0	0	0.65246	1	12667	12667		21.747	1.293	1	2013100	+		22703	15808	16466	16583	22276	22276					0.033180887601020004
ISHLGTPLYL	10	Unmodified	_ISHLGTPLYL_					0	0	0		nc|ENSG00000102048|Q96DX5-3|ASB9;nc|ENSG00000102048|Q96DX5-2|ASB9;ENST00000473862.5_1_X:15262630-15288056:-|nuORF;ENSG00000102048|ENST00000380488|ASB9	nc|ENSG00000102048|Q96DX5-3|ASB9	nc|ENSG00000102048|Q96DX5-3|ASB9	MULTI-MSMS	A375_MHC_IP_R1	1	557.8895263671875	2	557.318774	1112.623	-0.56212	-0.00031328	0.28187	0.00015709	-0.28025	-0.00015619	557.3187033595658	95.943	0.70917	95.943	95.565	96.274	0					29	13	3	0	0	0	0.53946	1	35326	35326		25.399	2.663	1	5973700			22704	2353	16467	16584	22277	22277					0.07118889028470221
ISHLIKIRLKP	11	Unmodified	_ISHLIKIRLKP_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MSMS	A375_MHC_IP_R2	2	659.441650390625	2	659.440089	1316.86563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.3	1	116.96	116.46	117.46	0.65962								0	0	0	0.16334	1	43906	43906		1.3295	0.87119	1				22705	6889	16468	16585	22278	22278					0.21986758824300523
ISHMAVSG	8	Unmodified	_ISHMAVSG_					0	0	0		nc|ENSG00000104728|O15013-7|ARHGEF10;nc|ENSG00000104728|O15013-4|ARHGEF10;ENSG00000104728|ENST00000349830|ARHGEF10;nc|ENSG00000104728|O15013-6|ARHGEF10;nc|ENSG00000104728|O15013|ARHGEF10;ENST00000523980.1_1_8:1891806-1893946:+|nuORF	nc|ENSG00000104728|O15013-7|ARHGEF10	nc|ENSG00000104728|O15013-7|ARHGEF10	MSMS	A375_MHC_IP_R2	2	401.1449279785156	2	401.199813	800.385073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.452	1	40.227	39.727	40.727	0.77451								0	0	0	0.16876	1	14567	14567		8.5933	2.2392	1				22706	2530	16469	16586	22279	22279					-0.023103751055941757
ISHPDVGRYF	10	Unmodified	_ISHPDVGRYF_					0	0	0		ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	MULTI-MSMS	A375_MHC_IP_R1	1	397.9367980957031	3	397.536612	1189.58801	-0.089336	-3.5514E-05	-0.93868	-0.00037316	-1.028	-0.00040867	397.5367853969155	52.12	0.66106	52.12	51.829	52.49	0					35	12	6	0	0	0	0.27942	1	18529	18529		41.347	18.689	1	3788800			22707	4646	16470	16587	22280	22280					0.0007964622052440973
ISHPDVGRYF	10	Unmodified	_ISHPDVGRYF_					0	0	0		ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	MULTI-MSMS	A375_MHC_IP_R2	2	397.9364013671875	3	397.536612	1189.58801	-0.29539	-0.00011743	1.5806	0.00062834	1.2852	0.00051091	397.53669086869394	51.439	0.40578	52.191	51.966	52.372	0.75225					19	7	4	0	0	0	0.54537	1	19387	19387		24.957	12.729	1	3421900			22708	4646	16470	16587	22281	22281					0.0007964622052440973
ISHSMFVL	8	Unmodified	_ISHSMFVL_					0	0	0			REV__nc|ENSG00000204403|Q6UXS9-4|CASP12	REV__nc|ENSG00000204403|Q6UXS9-4|CASP12	MULTI-MSMS	A375_MHC_IP_R1	1	467.6554870605469	2	467.246763	932.478974	-0.39437	-0.00018427	-0.26751	-0.000125	-0.66188	-0.00030926	467.24678639950014	94.916	2.1853	94.916	94.394	96.58	0					92	42	4	0	0	0	0.7479	1	35232	35232		20.871	20.871	1	5268500	+		22709	27455	16471	16588	22282	22282					0.010033439966832702
ISHVAFLLSA	10	Unmodified	_ISHVAFLLSA_					0	0	0			REV__TMTC3|p.P131S|1|0.61|ENSG00000139324|chr12:88153492-88153492|C/T|missense_variant	REV__TMTC3|p.P131S|1|0.61|ENSG00000139324|chr12:88153492-88153492|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	529.9625854492188	2	529.305667	1056.59678	-0.64183	-0.00033972	-3.4451	-0.0018235	-4.087	-0.0021632	529.3034673255479	52.566	0.30601	52.566	52.438	52.744	0					7	5	2	0	0	0	0.83355	1	18751	18751		12.241	0	1	1115600	+		22710	28135	16472	16589	22283	22283					0.0707461985698501
ISIAPSSPLL	10	Unmodified	_ISIAPSSPLL_					0	0	0		ENSG00000162402|ENST00000294383|USP24;USP24|p.P2369S|1|0.22|ENSG00000162402|chr1:55079633-55079633|G/A|missense_variant	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	A375_MHC_IP_R2	2	499.699951171875	2	499.30005	996.585547	-0.42355	-0.00021148	1.4987	0.00074829	1.0751	0.00053681	499.3002979290583	101.06	0.46219	101.82	101.6	102.06	0.76429					22	8	3	0	0	0	0.17045	1	38342	38342		52.268	3.9225	1	1947000			22711	6526	16473	16590	22284	22284					0.08711797762850892
ISIASSRIVLF	11	Unmodified	_ISIASSRIVLF_					0	0	0			REV__ENSG00000040531|ENST00000046640|CTNS	REV__ENSG00000040531|ENST00000046640|CTNS	MULTI-SECPEP	A375_MHC_IP_R2	2	603.71142578125	2	603.366256	1204.71796	-0.45499	-0.00027453	-0.071987	-4.3435E-05	-0.52698	-0.00031796	603.3663409153144	73.988	0.40735	74.725	74.449	74.857	0.73752					11	7	2	0	0	0	0.98303	1	28097	28097		12.873	0	1	782030	+		22712	16338	16474	16591	22285	22285					0.12378822499658781
ISIEDPEGQY	10	Unmodified	_ISIEDPEGQY_					0	0	0			REV__ENST00000460676.5_1_20:3193850-3194650:+|nuORF	REV__ENST00000460676.5_1_20:3193850-3194650:+|nuORF	MSMS	A375_MHC_IP_R1	1	575.6817016601562	2	575.766768	1149.51898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.96	1	101.96	101.46	102.46	0								0	0	0	0.15308	1	37468	37468		10.824	1.4408	1		+		22713	18372	16475	16592	22286	22286					-0.049794825897151895
ISIEEGVIS	9	Unmodified	_ISIEEGVIS_					0	0	0		KIRREL3|p.T475I|1|0.35|ENSG00000149571|chr11:126436939-126436939|G/A|missense_variant	KIRREL3|p.T475I|1|0.35|ENSG00000149571|chr11:126436939-126436939|G/A|missense_variant	KIRREL3|p.T475I|1|0.35|ENSG00000149571|chr11:126436939-126436939|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	473.6981201171875	2	473.758215	945.501877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.518	1	53.518	53.018	54.018	0								0	0	0	0.15069	1	19083	19083		20.454	1.0146	1				22714	14221	16476	16593	22287	22287					0.026946415951556446
ISIEELHHF	9	Unmodified	_ISIEELHHF_					0	0	0			REV__ENST00000556068.5_1_14:102228230-102284455:+|nuORF	REV__ENST00000556068.5_1_14:102228230-102284455:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	374.929443359375	3	375.529346	1123.56621	0.80248	0.00030135	-0.90949	-0.00034154	-0.10701	-4.0186E-05	375.5292079195533	45.171	0.3546	45.171	44.98	45.334	0					13	6	3	0	0	0	0.67221	1	15844	15844		13.042	7.3106	1	934190	+		22715	26103	16477	16594	22288	22288					0.009368414719347129
ISIEKKEIKKY	11	Unmodified	_ISIEKKEIKKY_					0	0	0		tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1	tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1	tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1	MSMS	A375_MHC_IP_R2	2	690.2224731445312	2	689.918852	1377.82315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.429	1	95.174	94.674	95.674	0.74474								0	0	0	0.16334	1	35886	35886		1.3295	0	1				22716	29838	16478	16595	22289	22289					0.1493531890541817
ISIELADQL	9	Unmodified	_ISIELADQL_					0	0	0			REV__chrX:2877307-2881079|139|14.29|0.55|4.71|+|0|GYG2,None|1	REV__chrX:2877307-2881079|139|14.29|0.55|4.71|+|0|GYG2,None|1	MULTI-MSMS	A375_MHC_IP_R1	1	501.2234802246094	2	501.279315	1000.54408	-0.30747	-0.00015413	-2.5966	-0.0013016	-2.904	-0.0014557	501.2790619126908	54.622	0.35526	54.622	54.415	54.771	0					10	6	3	0	0	0	0.32899	1	19477	19477		28.487	0	1	927950	+		22717	15780	16479	16596	22290	22290					0.043826170035117684
ISIELVELLAL	11	Unmodified	_ISIELVELLAL_					0	0	0			REV__ENST00000346964.6_2_3:196863483-196863546:-|nuORF	REV__ENST00000346964.6_2_3:196863483-196863546:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	607.174560546875	2	606.876122	1211.73769	-0.25185	-0.00015284	2.5043	0.0015198	2.2525	0.001367	607.3788874430126	93.693	0.25404	94.437	94.312	94.566	0.74474					6	4	2	0	0	0	0.99227	1	35643	35643		5.7319	0	1	853660	+		22718	23778	16480	16597	22291	22291					0.14029153719775422
ISIESARRF	9	Unmodified	_ISIESARRF_					0	0	0			REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	MULTI-MSMS	A375_MHC_IP_R1	1	360.61572265625	3	360.204974	1077.59309	-0.067264	-2.4229E-05	-0.65124	-0.00023458	-0.7185	-0.00025881	360.204889026139	23.371	0.71326	23.371	23.176	23.889	0					22	13	3	0	0	0	0.58047	1	6515	6515		15.248	1.6336	1	17798000	+		22719	16937	16481	16598	22292	22292					0.057399500831252226
ISIGLFLIIKY	11	Unmodified	_ISIGLFLIIKY_					0	0	0			REV__tr|U7SSM2|U7SSM2_FUSNUDUF1007domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01500PE=4SV=1	REV__tr|U7SSM2|U7SSM2_FUSNUDUF1007domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01500PE=4SV=1	MSMS	A375_MHC_IP_R2	2	640.4080810546875	2	640.40485	1278.79515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.768	1	70.502	70.002	71.002	0.73421								0	0	0	0.16297	1	26446	26446		3.2813	0.28607	1		+		22720	28437	16482	16599	22293	22293					0.16690040715980103
ISIGQTRR	8	Unmodified	_ISIGQTRR_					0	0	0		ENST00000299954.13_1_17:65373738-65373861:+|nuORF	ENST00000299954.13_1_17:65373738-65373861:+|nuORF	ENST00000299954.13_1_17:65373738-65373861:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	466.1773681640625	2	465.777608	929.540663	-0.077288	-3.5999E-05	0.25941	0.00012083	0.18212	8.4826E-05	465.7775917987032	110.22	1.222	110.22	109.78	111	0					60	23	3	0	0	0	0.77562	1	40614	40614		10.824	2.9138	1	10457000			22721	10532	16483	16600	22294	22294					0.07307411740168845
ISIGQTRR	8	Unmodified	_ISIGQTRR_					0	0	0		ENST00000299954.13_1_17:65373738-65373861:+|nuORF	ENST00000299954.13_1_17:65373738-65373861:+|nuORF	ENST00000299954.13_1_17:65373738-65373861:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	466.1773681640625	2	465.777608	929.540663	0.034793	1.6206E-05	-0.1437	-6.6934E-05	-0.10891	-5.0728E-05	465.7774359209808	112.21	2.3376	112.21	111.36	113.7	0					60	45	2	0	0	0	0.77643	1	41228	41228		7.9102	0	1	7357800			22722	10532	16483	16600	22295	22295					0.07307411740168845
ISILWERRG	9	Unmodified	_ISILWERRG_					0	0	0		ENST00000357086.9_1_3:4819005-4819050:+|nuORF	ENST00000357086.9_1_3:4819005-4819050:+|nuORF	ENST00000357086.9_1_3:4819005-4819050:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	377.93304443359375	3	377.220735	1128.64038	0.040343	1.5218E-05	0.056974	2.1492E-05	0.097317	3.671E-05	377.22074542206144	23.508	0.66224	23.508	23.227	23.889	0					31	12	4	0	0	0	0.58268	1	6590	6590		15.739	15.739	1	25726000			22723	10978	16484	16601	22296	22296					0.08120229354108233
ISIRVWGVGR	10	Unmodified	_ISIRVWGVGR_					0	0	0		ENST00000529778.5_1_11:6422476-6423430:-|nuORF;ENST00000533407.6_1_11:6422737-6440257:-|nuORF;ENST00000526925.6_1_11:6422737-6426086:-|nuORF;nc|ENSG00000166313|O00213-4|APBB1;nc|ENSG00000166313|O00213-6|APBB1;nc|ENSG00000166313|O00213-3|APBB1;nc|ENSG00000166313|O00213-5|APBB1;nc|ENSG00000166313|O00213-2|APBB1;ENSG00000166313|ENST00000609360|APBB1	ENST00000529778.5_1_11:6422476-6423430:-|nuORF	ENST00000529778.5_1_11:6422476-6423430:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	381.61328125	3	381.564614	1141.67201	-0.50136	-0.0001913	0.19667	7.504E-05	-0.30469	-0.00011626	381.56465850818205	33.621	0.75986	34.373	33.891	34.651	0.75225					23	14	2	0	0	0	0.70012	1	11941	11941		7.4771	0	1	2265000			22724	7057	16485	16602	22297	22297					0.10684222108102404
ISIRYYVRWR	10	Unmodified	_ISIRYYVRWR_					0	0	0		STEAP4|p.P312S|1|0.06|ENSG00000127954|chr7:88282691-88282691|G/A|missense_variant	STEAP4|p.P312S|1|0.06|ENSG00000127954|chr7:88282691-88282691|G/A|missense_variant	STEAP4|p.P312S|1|0.06|ENSG00000127954|chr7:88282691-88282691|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	471.6434020996094	3	471.270089	1410.78844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.677	1	67.413	66.913	67.913	0.73631								0	0	0	0.15372	1	25261	25261		5.0475	1.7279	1				22725	29261	16486	16603	22298	22298					0.09947540607959127
ISISAVQW	8	Unmodified	_ISISAVQW_					0	0	0		nc|ENSG00000071462|O43709-2|BUD23;ENST00000463307.5_1_7:73097949-73107126:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23	nc|ENSG00000071462|O43709-2|BUD23	nc|ENSG00000071462|O43709-2|BUD23	MULTI-MSMS	A375_MHC_IP_R2	2	903.892822265625	1	903.493444	902.486168	-0.43871	-0.00039637	0.089488	8.0852E-05	-0.34922	-0.00031552	903.4933047205301	106.2	0.40704	106.96	106.78	107.19	0.75977					12	7	2	0	0	0	0.15187	1	40152	40152		85.642	17.561	1	2750300			22726	1511	16487	16604	22299	22299					0.031023998687601306
ISISAVQW	8	Unmodified	_ISISAVQW_					0	0	0		nc|ENSG00000071462|O43709-2|BUD23;ENST00000463307.5_1_7:73097949-73107126:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23	nc|ENSG00000071462|O43709-2|BUD23	nc|ENSG00000071462|O43709-2|BUD23	MULTI-MATCH	A375_MHC_IP_R1	1		1	903.493444	902.486168	0.059818	5.4045E-05	0.40089	0.0003622	0.4607	0.00041624	903.4936997282222	107.06	0.51069	107.06	106.78	107.29	0	0.048879	0.00011361	NaN	85.642	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2523800			22727	1511	16487	16604							0.031023998687601306
ISISHSKKY	9	Unmodified	_ISISHSKKY_					0	0	0		tr|U7T2A4|U7T2A4_FUSNUHolo-[acyl-carrier-protein]synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=acpSPE=3SV=1	tr|U7T2A4|U7T2A4_FUSNUHolo-[acyl-carrier-protein]synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=acpSPE=3SV=1	tr|U7T2A4|U7T2A4_FUSNUHolo-[acyl-carrier-protein]synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=acpSPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	355.2610168457031	3	354.869591	1061.58694	-0.045414	-1.6116E-05	-1.216	-0.00043152	-1.2614	-0.00044763	354.86949981445997	25.229	1.1149	25.229	24.953	26.068	0					83	21	5	0	0	0	0.64971	1	7699	7699		11.495	2.5185	1	603810000			22728	29926	16488	16605	22300	22300					0.05861431851622001
ISISLLHSV	9	Unmodified	_ISISLLHSV_					0	0	0			REV__MAT2A|p.P327L|1|0.37|ENSG00000168906|chr2:85542929-85542929|C/T|missense_variant	REV__MAT2A|p.P327L|1|0.37|ENSG00000168906|chr2:85542929-85542929|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	485.1925354003906	2	484.792392	967.570232	-0.20745	-0.00010057	0.15754	7.6373E-05	-0.049916	-2.4199E-05	484.79231932521964	97.682	0.5596	97.682	97.44	97.999	0					16	10	2	0	0	0	0.24548	1	35893	35893		43.858	14.777	1	1791500	+		22729	26991	16489	16606	22301	22301					0.08514930965679923
ISISLLHSV	9	Unmodified	_ISISLLHSV_					0	0	0			REV__MAT2A|p.P327L|1|0.37|ENSG00000168906|chr2:85542929-85542929|C/T|missense_variant	REV__MAT2A|p.P327L|1|0.37|ENSG00000168906|chr2:85542929-85542929|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	485.1922912597656	2	484.792392	967.570232	-0.69305	-0.00033599	0.27124	0.00013149	-0.42181	-0.00020449	484.7924649703897	96.605	0.45432	97.361	97.115	97.569	0.75587					15	8	2	0	0	0	0.28475	1	36674	36674		25.399	9.5521	1	1883500	+		22730	26991	16489	16606	22302	22302					0.08514930965679923
ISISMRYEY	9	Unmodified	_ISISMRYEY_					0	0	0			REV__N4BP2L2|p.Q538R|1|0.43|ENSG00000244754|chr13:32517941-32517941|T/C|missense_variant	REV__N4BP2L2|p.Q538R|1|0.43|ENSG00000244754|chr13:32517941-32517941|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	581.6838989257812	2	581.284074	1160.5536	0.10722	6.2328E-05	-0.19594	-0.0001139	-0.08872	-5.1571E-05	581.2840722283445	22.698	1.1147	22.698	22.317	23.432	0					63	21	4	0	0	0	0.63811	1	6314	6314		12.532	1.7076	1	55281000	+		22731	27078	16490	16607	22303	22303					-0.02025937982580217
ISISQPGPFI	10	Unmodified	_ISISQPGPFI_					0	0	0			REV__nc|ENSG00000104047|Q8N5C7-2|DTWD1	REV__nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-SECPEP	A375_MHC_IP_R2	2	529.6946411132812	2	529.797675	1057.5808	-0.89636	-0.00047489	-3.034	-0.0016074	-3.9303	-0.0020823	529.7966059417064	61.273	0.50432	62.018	61.718	62.223	0.74503					14	9	2	0	0	0	0.88918	1	23260	23260		5.2969	0	1	1223400	+		22732	17298	16491	16608	22304	22304					0.054309136201027286
ISITFKLRRIE	11	Unmodified	_ISITFKLRRIE_					0	0	0			REV__tr|U7T489|U7T489_FUSNUFlagellarFliJproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00297PE=4SV=1	REV__tr|U7T489|U7T489_FUSNUFlagellarFliJproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00297PE=4SV=1	MSMS	A375_MHC_IP_R2	2	688.4886474609375	2	688.424636	1374.83472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.99	1	142.02	141.52	142.52	0.030731								0	0	0	0.16334	1	55518	55518		1.3295	0.13619	1		+		22733	28795	16492	16609	22305	22305					0.16229560719443725
ISKALVAYY	9	Unmodified	_ISKALVAYY_					0	0	0		ENSG00000105193|ENST00000251453|RPS16;ENST00000339471.8_1_19:39923915-39924228:-|nuORF;RPS16|p.S87F|1|0.43|ENSG00000105193|chr19:39433557-39433557|G/A|missense_variant	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-SECPEP	A375_MHC_IP_R1	1	514.6640625	2	514.294768	1026.57498	-0.51866	-0.00026675	-0.033514	-1.7236E-05	-0.55218	-0.00028398	514.2947106229763	59.301	0.71228	59.301	58.938	59.651	0					39	13	4	0	0	0	0.14606	1	21382	21382		55.503	21.4	1	34593000			22734	2573	16493	16610	22306	22306					0.06275815108415372
ISKALVAYY	9	Unmodified	_ISKALVAYY_					0	0	0		ENSG00000105193|ENST00000251453|RPS16;ENST00000339471.8_1_19:39923915-39924228:-|nuORF;RPS16|p.S87F|1|0.43|ENSG00000105193|chr19:39433557-39433557|G/A|missense_variant	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-SECPEP	A375_MHC_IP_R2	2	514.66357421875	2	514.294768	1026.57498	-1.0784	-0.00055464	0.030498	1.5685E-05	-1.0479	-0.00053895	514.2947564933171	58.464	0.66227	59.213	58.879	59.542	0.74895					38	12	4	0	0	0	0.070665	1	22184	22184		60.074	20.117	1	39516000			22735	2573	16493	16610	22307	22307					0.06275815108415372
ISKDVIRQL	9	Unmodified	_ISKDVIRQL_					0	0	0		ENSG00000138379|ENST00000260950|MSTN	ENSG00000138379|ENST00000260950|MSTN	ENSG00000138379|ENST00000260950|MSTN	MULTI-MSMS	A375_MHC_IP_R2	2	357.9309387207031	3	357.888874	1070.64479	-0.28345	-0.00010144	-0.21162	-7.5735E-05	-0.49506	-0.00017718	357.8887674845108	44.601	0.86516	45.37	45.086	45.951	0.76909					26	16	3	0	0	0	0.64971	1	16688	16688		11.495	0	1	6167400			22736	4985	16494	16611	22308	22308					0.11229693777045213
ISKEVFWNR	9	Unmodified	_ISKEVFWNR_					0	0	0		ENST00000400286.2_1_13:86368440-86368581:-|nuORF	ENST00000400286.2_1_13:86368440-86368581:-|nuORF	ENST00000400286.2_1_13:86368440-86368581:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	394.2838439941406	3	393.548741	1177.62439	0.066056	2.5996E-05	-0.079125	-3.114E-05	-0.013069	-5.1435E-06	393.54869065284754	55.402	1.7773	55.402	54.67	56.447	0					114	34	5	0	0	0	0.4867	1	19623	19623		14.405	0	1	142120000			22737	11553	16495	16612	22309	22309					0.04268523117229961
ISKHIRRWQPY	11	Unmodified	_ISKHIRRWQPY_					0	0	0			REV__nc|ENSG00000104643|Q96QG7-2|MTMR9	REV__nc|ENSG00000104643|Q96QG7-2|MTMR9	MULTI-MSMS	A375_MHC_IP_R1	1	495.68023681640625	3	495.280877	1482.8208	-0.28079	-0.00013907	-1.3395	-0.00066344	-1.6203	-0.00080251	495.2800769090253	88.452	0.35688	88.452	88.307	88.663	0					13	6	3	0	0	0	0.73658	1	32508	32508		2.6312	0.19645	1	2822600	+		22738	17330	16496	16613	22310	22310					0.09870328010970297
ISKIDWVY	8	Unmodified	_ISKIDWVY_					0	0	0			REV__nc|ENSG00000198408|O60502-3|OGA	REV__nc|ENSG00000198408|O60502-3|OGA	MULTI-SECPEP	A375_MHC_IP_R1	1	512.6776123046875	2	512.279118	1022.54368	-0.40326	-0.00020658	-1.8312	-0.00093807	-2.2344	-0.0011446	512.2780999823431	55.795	0.61017	55.795	55.584	56.194	0					17	11	2	0	0	0	0.8824	1	20010	20010		16.942	0	1	2341200	+		22739	22369	16497	16614	22311	22311					0.03331242074318652
ISKILGSRW	9	Unmodified	_ISKILGSRW_					0	0	0		nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5;nc|ENSG00000134532|P35711-3|SOX5;nc|ENSG00000134532|P35711-4|SOX5;ENST00000272193.10_1_1:204085443-204095259:+|nuORF;ENSG00000143842|ENST00000367204|SOX13;nc|ENSG00000110693|P35712-4|SOX6;nc|ENSG00000110693|P35712-2|SOX6;nc|ENSG00000110693|P35712-3|SOX6;ENSG00000110693|ENST00000683767|SOX6	nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000110693|P35712-4|SOX6	nc|ENSG00000134532|P35711-2|SOX5	MULTI-SECPEP	A375_MHC_IP_R1	1	529.9625244140625	2	530.319109	1058.62366	-0.25142	-0.00013333	-0.48901	-0.00025933	-0.74043	-0.00039267	530.3189535951807	48.248	0.45588	48.248	48.02	48.476	0					14	8	3	0	0	0	0.34544	1	17021	17021		26.021	13.78	1	6262300			22740	4585;2938	16498	16615	22312	22312					0.09669728468179528
ISKILGSRW	9	Unmodified	_ISKILGSRW_					0	0	0		nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5;nc|ENSG00000134532|P35711-3|SOX5;nc|ENSG00000134532|P35711-4|SOX5;ENST00000272193.10_1_1:204085443-204095259:+|nuORF;ENSG00000143842|ENST00000367204|SOX13;nc|ENSG00000110693|P35712-4|SOX6;nc|ENSG00000110693|P35712-2|SOX6;nc|ENSG00000110693|P35712-3|SOX6;ENSG00000110693|ENST00000683767|SOX6	nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000110693|P35712-4|SOX6	nc|ENSG00000134532|P35711-2|SOX5	MULTI-MSMS	A375_MHC_IP_R2	2	354.2818298339844	3	353.881831	1058.62366	-0.041704	-1.4758E-05	0.10129	3.5845E-05	0.059588	2.1087E-05	353.88180414136065	47.235	0.76486	47.996	47.715	48.48	0.76128					39	14	5	0	0	0	0.038567	1	17690	17690		68.76	4.7994	1	34435000			22741	4585;2938	16498	16615	22313	22313					0.09669728468179528
ISKILGSRW	9	Unmodified	_ISKILGSRW_					0	0	0		nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5;nc|ENSG00000134532|P35711-3|SOX5;nc|ENSG00000134532|P35711-4|SOX5;ENST00000272193.10_1_1:204085443-204095259:+|nuORF;ENSG00000143842|ENST00000367204|SOX13;nc|ENSG00000110693|P35712-4|SOX6;nc|ENSG00000110693|P35712-2|SOX6;nc|ENSG00000110693|P35712-3|SOX6;ENSG00000110693|ENST00000683767|SOX6	nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000110693|P35712-4|SOX6	nc|ENSG00000134532|P35711-2|SOX5	MULTI-SECPEP	A375_MHC_IP_R2	2	530.71875	2	530.319109	1058.62366	-0.42845	-0.00022721	0.12368	6.5592E-05	-0.30477	-0.00016162	530.3191010036152	47.237	0.35688	47.998	47.817	48.174	0.76128					16	6	4	0	0	0	0.29872	1	17712	17712		67.081	34.295	1	6962000			22742	4585;2938	16498	16615	22314	22314					0.09669728468179528
ISKKEKDKY	9	Unmodified	_ISKKEKDKY_					0	0	0		ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	MULTI-MSMS	A375_MHC_IP_R1	1	380.9363098144531	3	380.220401	1137.63937	0.12601	4.7911E-05	0.25319	9.6268E-05	0.3792	0.00014418	380.2204938194746	28.041	0.55412	28.041	27.684	28.238	0					20	10	3	0	0	0	0.39657	1	8542	8542		24.882	5.7376	1	3391100			22743	2076	16499	16616	22315	22315					0.07605970194549627
ISKKINTKF	9	Unmodified	_ISKKINTKF_					0	0	0		ENST00000584289.5_1_17:65341859-65362635:-|nuORF;nc|ENSG00000197170|O00232-2|PSMD12;ENSG00000197170|ENST00000356126|PSMD12	ENST00000584289.5_1_17:65341859-65362635:-|nuORF	ENST00000584289.5_1_17:65341859-65362635:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	360.62530517578125	3	360.225486	1077.65463	0.078862	2.8408E-05	-0.26547	-9.563E-05	-0.18661	-6.7222E-05	360.22536921951047	19.824	0.60874	19.824	19.471	20.079	0					23	11	3	0	0	0	0.074484	2	5033	4921;5033		55.249	11.267	1	4966000			22744	9126	16500	16617	22316;22317	22317					0.11890881782437646
ISKKINTKF	9	Unmodified	_ISKKINTKF_					0	0	0		ENST00000584289.5_1_17:65341859-65362635:-|nuORF;nc|ENSG00000197170|O00232-2|PSMD12;ENSG00000197170|ENST00000356126|PSMD12	ENST00000584289.5_1_17:65341859-65362635:-|nuORF	ENST00000584289.5_1_17:65341859-65362635:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	360.625	3	360.225486	1077.65463	-0.46433	-0.00016726	-1.8706	-0.00067384	-2.3349	-0.0008411	360.2245716549965	18.955	0.25997	19.559	19.423	19.683	0.60308					9	6	2	0	0	0	0.56584	1	5777	5777		16.566	2.951	1	10805000			22745	9126	16500	16617	22318	22318					0.11890881782437646
ISKKINTKFFQ	11	Unmodified	_ISKKINTKFFQ_					0	0	0		ENST00000584289.5_1_17:65341859-65362635:-|nuORF;nc|ENSG00000197170|O00232-2|PSMD12;ENSG00000197170|ENST00000356126|PSMD12	ENST00000584289.5_1_17:65341859-65362635:-|nuORF	ENST00000584289.5_1_17:65341859-65362635:-|nuORF	MSMS	A375_MHC_IP_R1	1	677.3203735351562	2	677.398087	1352.78162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.688	1	85.688	85.188	86.188	0								0	0	0	0.16203	1	31408	31408		8.1555	2.4237	1				22746	9126	16501	16618	22319	22319					0.1193418293673858
ISKKKASQLL	10	Unmodified	_ISKKKASQLL_					0	0	0			REV__ENST00000457660.6_1_11:62649366-62653989:+|nuORF	REV__ENST00000457660.6_1_11:62649366-62653989:+|nuORF	MSMS	A375_MHC_IP_R2	2	372.5951232910156	3	372.576408	1114.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.735	1	49.492	48.992	49.992	0.75737								0	0	0	0.15588	1	18302	18302		1.7423	0.14999	1		+		22747	20816	16502	16619	22320	22320					0.15462839845235976
ISKKLTRYL	9	Unmodified	_ISKKLTRYL_					0	0	0		nc|ENSG00000114268|Q16877-2|PFKFB4;nc|ENSG00000114268|Q16877-3|PFKFB4;ENSG00000114268|ENST00000232375|PFKFB4;ENST00000417753.5_1_3:48557182-48594149:-|nuORF;ENST00000496767.5_1_3:48586091-48599213:-|nuORF;ENST00000490115.5_1_3:48586091-48594264:-|nuORF;PFKFB4|p.S119Vfs*47|1|0.38|ENSG00000114268|chr3:48543606-48543606|G/-|frameshift_variant;nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3	nc|ENSG00000114268|Q16877-2|PFKFB4;nc|ENSG00000170525|Q16875-3|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	MULTI-MSMS	A375_MHC_IP_R1	1	374.59674072265625	3	374.572886	1120.69683	0.10964	4.1067E-05	-0.32735	-0.00012262	-0.21772	-8.1552E-05	374.57268031333723	30.882	0.50668	30.882	30.653	31.16	0					13	9	2	0	0	0	0.72181	1	9849	9849		5.0475	1.1712	1	1230200			22748	7518;3206	16503	16620	22321	22321					0.14130857190798451
ISKKVLKIK	9	Unmodified	_ISKKVLKIK_					0	0	0		NME8|p.E172K|1|0.13|ENSG00000086288|chr7:37864407-37864407|G/A|missense_variant	NME8|p.E172K|1|0.13|ENSG00000086288|chr7:37864407-37864407|G/A|missense_variant	NME8|p.E172K|1|0.13|ENSG00000086288|chr7:37864407-37864407|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	353.3214416503906	3	352.921627	1055.74305	-0.2349	-8.2902E-05	0.10864	3.834E-05	-0.12626	-4.4561E-05	352.92162611807055	19.372	0.69068	19.372	19.238	19.928	0					28	13	3	0	0	0	0.042871	1	4814	4814		67.081	2.154	1	6174400			22749	15009	16504	16621	22322	22322					0.21740922092863002
ISKKVLKIK	9	Unmodified	_ISKKVLKIK_					0	0	0		NME8|p.E172K|1|0.13|ENSG00000086288|chr7:37864407-37864407|G/A|missense_variant	NME8|p.E172K|1|0.13|ENSG00000086288|chr7:37864407-37864407|G/A|missense_variant	NME8|p.E172K|1|0.13|ENSG00000086288|chr7:37864407-37864407|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	352.921627	1055.74305	-0.49205	-0.00017365	-0.45325	-0.00015996	-0.9453	-0.00033362	352.9215500158222	18.855	0.1105	19.458	19.423	19.533	0.60308	0.043319	-0.0005692	NaN	67.081	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19888000			22750	15009	16504	16621							0.21740922092863002
ISKLSDSNL	9	Unmodified	_ISKLSDSNL_					0	0	0			REV__ENSG00000016864|ENST00000266014|GLT8D1	REV__ENSG00000016864|ENST00000266014|GLT8D1	MSMS	A375_MHC_IP_R2	2	488.70806884765625	2	488.769114	975.523675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.936	1	77.679	77.179	78.179	0.74293								0	0	0	0.15411	1	29211	29211		14.838	0.25658	1		+		22751	16252	16505	16622	22323	22323					0.03493446343702544
ISKLVELNA	9	Unmodified	_ISKLVELNA_					0	0	0			REV__ENST00000523214.5_1_8:125500837-125516518:-|nuORF	REV__ENST00000523214.5_1_8:125500837-125516518:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1789245605469	2	493.797675	985.580796	-0.42118	-0.00020798	-0.63953	-0.0003158	-1.0607	-0.00052378	493.79753499569523	42.742	0.65782	43.515	43.268	43.926	0.7724					19	12	2	0	0	0	0.5212	1	15971	15971		26.268	14.027	1	1863000	+		22752	25739	16506	16623	22324	22324					0.08742913620085346
ISKNFTVYL	9	Unmodified	_ISKNFTVYL_					0	0	0			REV__nc|ENSG00000134452|Q8NFZ0-2|FBH1	REV__nc|ENSG00000134452|Q8NFZ0-2|FBH1	MULTI-SECPEP	A375_MHC_IP_R2	2	543.2053833007812	2	542.8055	1083.59645	-1.1152	-0.00060532	0.40049	0.00021739	-0.71468	-0.00038793	542.8054650423838	54.241	0.45639	54.992	54.712	55.169	0.75075					15	8	2	0	0	0	0.3213	1	20462	20462		46.021	3.9264	1	2139800	+		22753	27235	16507	16624	22325	22325					0.05799200137153093
ISKNKKWV	8	Unmodified	_ISKNKKWV_					0	0	0			REV__ENST00000506590.1_1_4:78527019-78531849:+|nuORF	REV__ENST00000506590.1_1_4:78527019-78531849:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	502.2079772949219	2	501.808377	1001.6022	-1.0622	-0.00053304	0.10023	5.0298E-05	-0.96201	-0.00048274	501.8084117976982	52.534	0.40536	53.286	53.083	53.489	0.75225					18	7	3	0	0	0	0.97021	1	19796	19796		15.847	15.847	1	5993400	+		22754	19971	16508	16625	22326	22326					0.10146343439464545
ISKPGQFETF	10	Unmodified	_ISKPGQFETF_					0	0	0		nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	MULTI-MSMS	A375_MHC_IP_R2	2	577.69775390625	2	577.298039	1152.58152	-0.2527	-0.00014588	0.032112	1.8538E-05	-0.22059	-0.00012734	577.2979244886805	55.432	0.50574	56.183	55.984	56.489	0.75075					15	9	3	0	0	0	0.35113	1	20966	20966		37.075	10.807	1	1876500			22755	2185	16509	16626	22327	22327					0.011337082691397882
ISKPGQFETF	10	Unmodified	_ISKPGQFETF_					0	0	0		nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	MULTI-MATCH	A375_MHC_IP_R1	1		2	577.298039	1152.58152	-0.057995	-3.348E-05	0.0094796	5.4725E-06	-0.048515	-2.8008E-05	577.2980127936023	56.275	0.4565	56.275	56.041	56.498	0	0.046293	-1.0664E-05	NaN	37.075	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1205300			22756	2185	16509	16626							0.011337082691397882
ISKPPGVAL	9	Unmodified	_ISKPPGVAL_					0	0	0		nc|ENSG00000100146|P56693|SOX10;chr22:37984441-37987345|453|15.29|0.34|5.48|-|ENST00000360880|SOX10,SOX10	nc|ENSG00000100146|P56693|SOX10	nc|ENSG00000100146|P56693|SOX10	MULTI-SECPEP	A375_MHC_IP_R1	1	441.1241149902344	2	441.276378	880.538203	0.083218	3.6722E-05	-0.046879	-2.0687E-05	0.036339	1.6036E-05	441.2763095068283	47.861	0.50414	47.861	47.618	48.122	0					15	9	2	0	0	0	0.31606	1	16881	16881		47.749	9.5975	1	1698600			22757	471	16510	16627	22328	22328					0.09315563282518724
ISKPPGVAL	9	Unmodified	_ISKPPGVAL_					0	0	0		nc|ENSG00000100146|P56693|SOX10;chr22:37984441-37987345|453|15.29|0.34|5.48|-|ENST00000360880|SOX10,SOX10	nc|ENSG00000100146|P56693|SOX10	nc|ENSG00000100146|P56693|SOX10	MULTI-SECPEP	A375_MHC_IP_R1	1	882.2537841796875	1	881.54548	880.538203	0.25277	0.00022283	-0.63576	-0.00056045	-0.38299	-0.00033763	881.5447815811054	49.202	0.75951	49.202	48.78	49.54	0					37	14	3	0	0	0	0.16595	1	17323	17323		53.404	20.618	1	14832000			22758	471	16510	16627	22329	22329					0.09315563282518724
ISKPPGVAL	9	Unmodified	_ISKPPGVAL_					0	0	0		nc|ENSG00000100146|P56693|SOX10;chr22:37984441-37987345|453|15.29|0.34|5.48|-|ENST00000360880|SOX10,SOX10	nc|ENSG00000100146|P56693|SOX10	nc|ENSG00000100146|P56693|SOX10	MULTI-MSMS	A375_MHC_IP_R2	2	441.6763000488281	2	441.276378	880.538203	-0.29008	-0.00012801	-0.014316	-6.3175E-06	-0.3044	-0.00013432	441.27637482846495	48.298	3.6472	49.055	48.476	52.123	0.75737					176	71	5	0	0	0	0.032333	3	18214	17988;18214;18430		72.968	16.791	1	508810000			22759	471	16510	16627	22330;22331;22332	22331					0.09315563282518724
ISKPPGVAL	9	Unmodified	_ISKPPGVAL_					0	0	0		nc|ENSG00000100146|P56693|SOX10;chr22:37984441-37987345|453|15.29|0.34|5.48|-|ENST00000360880|SOX10,SOX10	nc|ENSG00000100146|P56693|SOX10	nc|ENSG00000100146|P56693|SOX10	MULTI-SECPEP	A375_MHC_IP_R2	2	882.2539672851562	1	881.54548	880.538203	-0.45911	-0.00040473	-0.012149	-1.071E-05	-0.47126	-0.00041544	881.545349530563	48.24	0.75541	48.997	48.678	49.434	0.75737					34	14	3	0	0	0	0.30925	1	18044	18044		41.956	9.1699	1	14002000			22760	471	16510	16627	22333	22333					0.09315563282518724
ISKPPPGF	8	Unmodified	_ISKPPPGF_					0	0	0		nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-4|ZNF598;ENST00000565396.5_1_16:2048964-2050409:-|nuORF;ENST00000567008.1_1_16:2048235-2049192:-|nuORF;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598	nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598	nc|ENSG00000167962|Q86UK7-2|ZNF598	MULTI-SECPEP	A375_MHC_IP_R1	1	421.9483337402344	2	421.742171	841.469789	-0.16292	-6.8711E-05	0.011524	4.86E-06	-0.1514	-6.3851E-05	421.7421422097275	36.346	1.2155	36.346	35.932	37.148	0					38	23	2	0	0	0	0.55372	1	12211	12211		57.471	23.369	1	2746400			22761	14751;7239	16511	16628	22334	22334					0.04271318702660665
ISKPPPGF	8	Unmodified	_ISKPPPGF_					0	0	0		nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-4|ZNF598;ENST00000565396.5_1_16:2048964-2050409:-|nuORF;ENST00000567008.1_1_16:2048235-2049192:-|nuORF;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598	nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598	nc|ENSG00000167962|Q86UK7-2|ZNF598	MULTI-SECPEP	A375_MHC_IP_R2	2	422.14178466796875	2	421.742171	841.469789	-0.31127	-0.00013128	0.043966	1.8542E-05	-0.26731	-0.00011273	421.74215259637936	35.595	1.2194	36.358	35.829	37.048	0.76338					41	23	2	0	0	0	0.55372	1	12882	12882		57.471	21.427	1	4614500			22762	14751;7239	16511	16628	22335	22335					0.04271318702660665
ISKQFHHQL	9	Unmodified	_ISKQFHHQL_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-SECPEP	A375_MHC_IP_R1	1	380.27716064453125	3	379.876969	1136.60908	0.15678	5.9555E-05	0.35169	0.0001336	0.50846	0.00019315	379.87705836346765	19.293	0.28278	19.293	19.238	19.521	0					12	5	3	0	0	0	0.13064	1	4750	4750		51.415	51.415	1	18359000			22763	8551	16512	16629	22336	22336					0.046236563200409364
ISKQQIQAF	9	Unmodified	_ISKQQIQAF_					0	0	0			REV__MCOLN2|p.S489Dfs*14|1|0.35|ENSG00000153898|chr1:84931414-84931439|ATATATATAAAAAGGCTGATGAAGGA/-|frameshift_variant	REV__MCOLN2|p.S489Dfs*14|1|0.35|ENSG00000153898|chr1:84931414-84931439|ATATATATAAAAAGGCTGATGAAGGA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	532.1998901367188	2	531.800749	1061.58694	-0.74746	-0.0003975	-0.30914	-0.0001644	-1.0566	-0.0005619	531.8005995619093	27.958	0.30529	28.636	28.502	28.808	0.67857					10	5	3	0	0	0	0.60917	1	9638	9638		25.399	2.2509	1	2431000	+		22764	19853	16513	16630	22337	22337					0.058614318515992636
ISKQQIQAF	9	Unmodified	_ISKQQIQAF_					0	0	0			REV__MCOLN2|p.S489Dfs*14|1|0.35|ENSG00000153898|chr1:84931414-84931439|ATATATATAAAAAGGCTGATGAAGGA/-|frameshift_variant	REV__MCOLN2|p.S489Dfs*14|1|0.35|ENSG00000153898|chr1:84931414-84931439|ATATATATAAAAAGGCTGATGAAGGA/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	531.800749	1061.58694	-0.51048	-0.00027147	-0.54135	-0.00028789	-1.0518	-0.00055936	531.8003750184566	28.635	0.40586	28.635	28.288	28.694	0	-0.0005711	-8.9108E-05	NaN	25.399	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2363900	+		22765	19853	16513	16630							0.058614318515992636
ISKRFLVF	8	Unmodified	_ISKRFLVF_					0	0	0			REV__ENST00000607742.5_1_6:158532400-158537340:-|nuORF	REV__ENST00000607742.5_1_6:158532400-158537340:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	505.7133483886719	2	505.313295	1008.61204	-0.35854	-0.00018118	0.38403	0.00019406	0.025489	1.288E-05	505.31345935853795	60.134	0.45774	60.134	59.854	60.312	0					18	8	3	0	0	0	0.64636	1	21621	21621		50.855	14.811	1	3944300	+		22766	26552	16514	16631	22338	22338					0.10807531444845608
ISKRFLVF	8	Unmodified	_ISKRFLVF_					0	0	0			REV__ENST00000607742.5_1_6:158532400-158537340:-|nuORF	REV__ENST00000607742.5_1_6:158532400-158537340:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	505.7127990722656	2	505.313295	1008.61204	-1.0814	-0.00054646	-0.069685	-3.5213E-05	-1.1511	-0.00058167	505.3132396195241	58.919	0.45792	59.666	59.438	59.896	0.74714					15	8	2	0	0	0	0.66714	1	22296	22296		42.095	13.608	1	3531100	+		22767	26552	16514	16631	22339	22339					0.10807531444845608
ISKRFLVF	8	Unmodified	_ISKRFLVF_					0	0	0			REV__ENST00000607742.5_1_6:158532400-158537340:-|nuORF	REV__ENST00000607742.5_1_6:158532400-158537340:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	504.67327880859375	2	505.313295	1008.61204	-1.0814	-0.00054646	-0.069685	-3.5213E-05	-1.1511	-0.00058167	505.3132396195241	58.919	0.45792	59.666	59.438	59.896	0.74714					15	8	2	0	0	0	0.94587	1	22283	22283		14.838	0	1	3531100	+		22768	26552	16514	16631	22340	22340					0.10807531444845608
ISKRKAKFLI	10	Unmodified	_ISKRKAKFLI_					0	0	0			REV__ENST00000507549.7_1_5:69716099-69717567:+|nuORF	REV__ENST00000507549.7_1_5:69716099-69717567:+|nuORF	MSMS	A375_MHC_IP_R2	2	602.3939208984375	2	602.400433	1202.78631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.759	1	99.519	99.019	100.02	0.75977								0	0	0	0.15591	1	37462	37462		1.6526	0	1		+		22769	25567	16515	16632	22341	22341					0.19303111870181056
ISKRNLQL	8	Unmodified	_ISKRNLQL_					0	0	0			REV__DDIAS|p.Q272L|1|0.26|ENSG00000165490|chr11:82932153-82932153|A/T|missense_variant	REV__DDIAS|p.Q272L|1|0.26|ENSG00000165490|chr11:82932153-82932153|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	486.7034606933594	2	486.303458	970.592364	0.18423	8.9592E-05	-0.75043	-0.00036494	-0.5662	-0.00027534	486.303013688871	44.605	0.45752	44.605	44.37	44.827	0					17	8	3	0	0	0	0.46955	1	15596	15596		56.177	12.319	1	3612900	+		22770	15973	16516	16633	22342	22342					0.10589155434081476
ISKSQTNPV	9	Unmodified	_ISKSQTNPV_					0	0	0		ENSG00000157741|ENST00000473989|UBN2;nc|ENSG00000157741|Q6ZU65-2|UBN2	ENSG00000157741|ENST00000473989|UBN2	ENSG00000157741|ENST00000473989|UBN2	MULTI-SECPEP	A375_MHC_IP_R2	2	487.1893615722656	2	487.269281	972.52401	-0.39531	-0.00019262	0.24759	0.00012064	-0.14772	-7.1981E-05	487.26941956706713	46.846	0.76286	47.608	47.361	48.123	0.76128					26	14	3	0	0	0	0.46045	1	17512	17512		29.082	11.969	1	6131700			22771	6263	16517	16634	22343	22343					0.03664866063570571
ISKSVTRRS	9	Unmodified	_ISKSVTRRS_					0	0	0			REV__nc|ENSG00000143257|Q14994-16|NR1I3	REV__nc|ENSG00000143257|Q14994-16|NR1I3	MULTI-SECPEP	A375_MHC_IP_R1	1	517.2188720703125	2	517.309272	1032.60399	-0.6962	-0.00036015	-1.9286	-0.00099769	-2.6248	-0.0013578	517.3082016994251	80.617	0.55701	80.617	80.238	80.795	0					16	10	2	0	0	0	0.38578	1	29489	29489		34.402	5.3201	1	3564100	+		22772	27267	16518	16635	22344	22344					0.08899352457410714
ISKVLPQAT	9	Unmodified	_ISKVLPQAT_					0	0	0			REV__KIF2B|p.E289K|1|0.52|ENSG00000141200|chr17:53823898-53823898|G/A|missense_variant	REV__KIF2B|p.E289K|1|0.52|ENSG00000141200|chr17:53823898-53823898|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	478.6544494628906	2	478.792392	955.570232	-0.69218	-0.00033141	0.72614	0.00034767	0.033954	1.6257E-05	478.7923849422849	55.866	0.35708	56.616	56.388	56.745	0.75015					10	6	2	0	0	0	0.78348	1	21022	21022		4.3292	0	1	1297500	+		22773	26851	16519	16636	22345	22345					0.09066930965661868
ISKWRLRVY	9	Unmodified	_ISKWRLRVY_					0	0	0			REV__ENST00000377482.9_1_1:8072312-8072462:-|nuORF	REV__ENST00000377482.9_1_1:8072312-8072462:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	407.360107421875	3	407.580264	1219.71896	-0.26102	-0.00010638	1.4513	0.00059153	1.1903	0.00048515	407.58090453259075	19.126	0.40235	19.729	19.583	19.986	0.60308					10	7	2	0	0	0	0.78348	1	5843	5843		4.897	4.8022	1	1844900	+		22774	24158	16520	16637	22346	22346					0.1178908165923076
ISKYRKETF	9	Unmodified	_ISKYRKETF_					0	0	0			REV__nc|ENSG00000160752|P14324-2|FDPS	REV__nc|ENSG00000160752|P14324-2|FDPS	MULTI-SECPEP	A375_MHC_IP_R2	2	390.9486083984375	3	391.220513	1170.63971	-0.21485	-8.4054E-05	0.1176	4.6009E-05	-0.097246	-3.8045E-05	391.22051372635326	39.701	0.35635	40.475	40.269	40.626	0.77451					16	6	3	0	0	0	0.69179	1	14675	14675		12.175	8.0581	1	5879300	+		22775	20183	16521	16638	22347	22347					0.061213899144149764
ISLAAASIW	9	Unmodified	_ISLAAASIW_					0	0	0			REV__ENSG00000214943|ENST00000399285|GPR33	REV__ENSG00000214943|ENST00000399285|GPR33	MULTI-MSMS	A375_MHC_IP_R2	2	466.6658935546875	2	466.26601	930.517468	-0.57997	-0.00027042	0.12735	5.9377E-05	-0.45262	-0.00021104	466.26596882660823	63.849	0.50748	64.59	64.292	64.8	0.74023					14	9	2	0	0	0	0.27715	1	24234	24234		32.305	1.6689	1	1360400	+		22776	22666	16522	16639	22348	22348					0.04942972902836118
ISLALHPER	9	Unmodified	_ISLALHPER_					0	0	0		nc|ENSG00000165521|Q05BV3|EML5;ENSG00000165521|ENST00000554922|EML5;nc|ENSG00000165521|Q05BV3-4|EML5;nc|ENSG00000165521|Q05BV3-2|EML5	nc|ENSG00000165521|Q05BV3|EML5	nc|ENSG00000165521|Q05BV3|EML5	MULTI-SECPEP	A375_MHC_IP_R2	2	518.6890258789062	2	518.300916	1034.58728	-0.68161	-0.00035328	-1.4635	-0.00075851	-2.1451	-0.0011118	518.3000458566063	73.191	0.30627	73.926	73.785	74.091	0.73541					7	5	2	0	0	0	0.38578	1	27798	27798		34.402	5.3201	1	940630			22777	6963	16523	16640	22349	22349					0.07136851571453917
ISLANQQYV	9	Unmodified	_ISLANQQYV_					0	0	0		ENST00000535516.5_1_13:111293886-111298616:-|nuORF;ENSG00000134905|ENST00000257347|CARS2	ENST00000535516.5_1_13:111293886-111298616:-|nuORF	ENST00000535516.5_1_13:111293886-111298616:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	518.6765747070312	2	518.277106	1034.53966	-1.0621	-0.00055046	-0.0052459	-2.7188E-06	-1.0673	-0.00055318	518.2771165640587	60.133	0.9634	60.88	60.148	61.111	0.74714					31	18	2	0	0	0	0.50702	1	22774	22774		25.399	6.0374	1	2894700			22778	4624	16524	16641	22350	22350					0.023771525806068894
ISLDFHNIL	9	Unmodified	_ISLDFHNIL_					0	0	0			REV__ENSG00000154262|ENST00000284425|ABCA6	REV__ENSG00000154262|ENST00000284425|ABCA6	MULTI-SECPEP	A375_MHC_IP_R2	2	536.695556640625	2	536.295299	1070.57605	-0.78614	-0.0004216	1.5258	0.00081826	0.73963	0.00039666	536.2962338631345	79.647	0.81341	80.392	79.946	80.759	0.74474					42	15	4	0	0	0	0.05021	1	30221	30221		78.728	10.647	1	28957000	+		22779	19875	16525	16642	22351	22351					0.04358029477339187
ISLDYDNDV	9	Unmodified	_ISLDYDNDV_					0	0	0			REV__tr|U7SQS9|U7SQS9_FUSNUsite-specificDNA-methyltransferase(adenine-specific)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01567PE=4SV=1	REV__tr|U7SQS9|U7SQS9_FUSNUsite-specificDNA-methyltransferase(adenine-specific)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01567PE=4SV=1	MSMS	A375_MHC_IP_R1	1	527.153564453125	2	527.240386	1052.46622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.585	1	56.585	56.085	57.085	0								0	0	0	0.14359	1	20274	20274		28.487	6.7402	1		+		22780	28381	16526	16643	22352	22352					-0.05791440652546953
ISLEGVHVI	9	Unmodified	_ISLEGVHVI_					0	0	0		nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;ENSG00000126391|ENST00000317568|FRMD8	nc|ENSG00000126391|Q9BZ67-2|FRMD8	nc|ENSG00000126391|Q9BZ67-2|FRMD8	MULTI-SECPEP	A375_MHC_IP_R2	2	484.2080993652344	2	483.784567	965.554582	-0.52154	-0.00025232	-0.24259	-0.00011736	-0.76414	-0.00036968	483.78440918545994	83.866	0.56279	84.606	84.305	84.868	0.73962					15	10	2	0	0	0	0.55359	1	31855	31855		21.747	10.923	1	1127000			22781	4040	16527	16644	22353	22353					0.07042644448631563
ISLEPSADMSM	11	Unmodified	_ISLEPSADMSM_					0	0	0			REV__nc|ENSG00000129680|Q8IWC1-2|MAP7D3	REV__nc|ENSG00000129680|Q8IWC1-2|MAP7D3	MULTI-SECPEP	A375_MHC_IP_R1	1	393.93780517578125	3	394.178997	1179.51516	0.27782	0.00010951	0.17081	6.7328E-05	0.44863	0.00017684	394.1790026196593	21.492	0.65921	21.492	21.098	21.757	0					24	12	4	0	0	0	0.9754	1	5640	5640		9.7643	7.133	1	4551500	+		22782	18506	16528	16645	22354	22354					-0.06741611679444759
ISLFTRSLV	9	Unmodified	_ISLFTRSLV_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	A375_MHC_IP_R1	1	518.7131958007812	2	518.313492	1034.61243	-0.24436	-0.00012666	-0.23284	-0.00012069	-0.4772	-0.00024734	518.3133230131499	112.16	0.7132	112.16	111.87	112.59	0					25	13	3	0	0	0	0.41434	1	41085	41085		39.95	0	1	5649400	+		22783	21369	16529	16646	22355	22355					0.09650906374031365
ISLGLKHIHD	10	Unmodified	_ISLGLKHIHD_					0	0	0		nc|ENSG00000197168|Q6P3R8|NEK5;ENSG00000197168|ENST00000684899|NEK5	nc|ENSG00000197168|Q6P3R8|NEK5	nc|ENSG00000197168|Q6P3R8|NEK5	MULTI-MSMS	A375_MHC_IP_R1	1	379.9494934082031	3	378.220624	1131.64004	0.2556	9.6675E-05	0.18788	7.1062E-05	0.44349	0.00016774	378.2206861633222	19.643	0.86325	19.643	19.368	20.232	0					61	16	6	0	0	0	0.7154	1	4879	4879		5.4027	0	1	124940000			22784	9125	16530	16647	22356	22356					0.07948809634262943
ISLGSFRGW	9	Unmodified	_ISLGSFRGW_					0	0	0		ENST00000341259.6_1_12:111887440-111887905:+|nuORF	ENST00000341259.6_1_12:111887440-111887905:+|nuORF	ENST00000341259.6_1_12:111887440-111887905:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	511.98883056640625	2	511.774534	1021.53451	-0.28156	-0.0001441	0.38967	0.00019943	0.10811	5.5328E-05	511.77482121470723	43.246	0.35713	43.246	43.043	43.4	0					11	6	2	0	0	0	0.59098	1	15024	15024		21.537	5.6898	1	1303300			22785	10866	16531	16648	22357	22357					0.02460893508657591
ISLGSFRGW	9	Unmodified	_ISLGSFRGW_					0	0	0		ENST00000341259.6_1_12:111887440-111887905:+|nuORF	ENST00000341259.6_1_12:111887440-111887905:+|nuORF	ENST00000341259.6_1_12:111887440-111887905:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	511.774534	1021.53451	-0.69207	-0.00035419	0.49943	0.00025559	-0.19265	-9.8592E-05	512.2763828611434	42.318	0.30712	43.09	42.91	43.218	0.7724	-0.077643	4.8678E-05	NaN	21.537	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1135200			22786	10866	16531	16648							0.02460893508657591
ISLHQTGKLDP	11	Unmodified	_ISLHQTGKLDP_					0	0	0		CORO2A|p.P64S|1|0.45|ENSG00000106789|chr9:98157471-98157471|G/A|missense_variant	CORO2A|p.P64S|1|0.45|ENSG00000106789|chr9:98157471-98157471|G/A|missense_variant	CORO2A|p.P64S|1|0.45|ENSG00000106789|chr9:98157471-98157471|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	403.2681884765625	3	403.559305	1207.65609	-0.50385	-0.00020333	3.1432	0.0012685	2.6394	0.0010651	403.56071000172614	32.118	0.36	32.118	31.973	32.333	0					8	6	2	0	0	0	0.99018	1	10438	10438		2.084	0	1	862110			22787	642	16532	16649	22358	22358					0.060564710805238064
ISLKGIKNNSW	11	Unmodified	_ISLKGIKNNSW_					0	0	0		tr|U7T5C5|U7T5C5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00520PE=4SV=1	tr|U7T5C5|U7T5C5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00520PE=4SV=1	tr|U7T5C5|U7T5C5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00520PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	630.4679565429688	2	630.358962	1258.70337	-1.0419	-0.00065675	1.1954	0.00075355	0.15355	9.6794E-05	631.3630788578895	68.065	0.40522	68.065	67.854	68.26	0					15	7	3	0	0	0	0.98748	1	24695	24695		5.2969	0	1	866820			22788	30019	16533	16650	22359	22359					0.08436750351506817
ISLKPLSFSAY	11	Unmodified	_ISLKPLSFSAY_					0	0	0		ENST00000319770.7_1_12:6775995-6776247:-|nuORF	ENST00000319770.7_1_12:6775995-6776247:-|nuORF	ENST00000319770.7_1_12:6775995-6776247:-|nuORF	MSMS	A375_MHC_IP_R1	1	613.3643188476562	2	613.344989	1224.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.727	1	66.727	66.227	67.227	0								0	0	0	0.16191	1	24171	24171		8.7454	0	1				22789	10683	16534	16651	22360	22360					0.07207427371417907
ISLKTPRLAM	10	Unmodified	_ISLKTPRLAM_					0	0	0			REV__ENST00000559000.5_1_15:56945523-56946605:-|nuORF	REV__ENST00000559000.5_1_15:56945523-56946605:-|nuORF	MSMS	A375_MHC_IP_R1	1	565.2796630859375	2	565.341726	1128.6689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.414	1	94.414	93.914	94.914	0								0	0	0	0.1524	1	34702	34702		13.042	1.5478	1		+		22790	26144	16535	16652	22361	22361					0.10971210939055709
ISLLLIESRLE	11	Unmodified	_ISLLLIESRLE_					0	0	0		ENSG00000204414|ENST00000309894|CSHL1;nc|ENSG00000204414|Q14406-4|CSHL1;nc|ENSG00000204414|Q14406-3|CSHL1;nc|ENSG00000204414|Q14406-2|CSHL1	ENSG00000204414|ENST00000309894|CSHL1	ENSG00000204414|ENST00000309894|CSHL1	MSMS	A375_MHC_IP_R1	1	643.7245483398438	2	643.389928	1284.7653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.01	1	126.01	125.51	126.51	0								0	0	0	0.15837	1	48063	48063		15.248	1.6336	1				22791	9440	16536	16653	22362	22362					0.13431056979993627
ISLLWWLLFSA	11	Unmodified	_ISLLWWLLFSA_					0	0	0			REV__ABCB9|p.T139I|1|0.33|ENSG00000150967|chr12:122959820-122959820|G/A|missense_variant	REV__ABCB9|p.T139I|1|0.33|ENSG00000150967|chr12:122959820-122959820|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	675.7799072265625	2	674.886824	1347.7591	-0.87164	-0.00058826	-0.083553	-5.6389E-05	-0.95519	-0.00064465	674.8865345124386	131.71	1.8199	131.71	131.07	132.89	0					90	35	4	0	0	0	0.7362	1	50652	50652		2.9952	0.71247	1	39853000	+		22792	15287	16537	16654	22363	22363					0.09912583539130537
ISLMRAKRF	9	Unmodified	_ISLMRAKRF_					0	0	0		ENST00000323883.11_1_10:22839601-22839673:-|nuORF	ENST00000323883.11_1_10:22839601-22839673:-|nuORF	ENST00000323883.11_1_10:22839601-22839673:-|nuORF	MSMS	A375_MHC_IP_R1	1	374.61669921875	3	374.558583	1120.65392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.707	1	35.707	35.207	36.207	0								0	0	0	0.15486	1	11898	11898		8.1555	0.54658	1				22793	10711	16538	16655	22364	22364					0.09841763861732034
ISLNAKSIIL	10	Unmodified	_ISLNAKSIIL_					0	0	0		tr|U7SWL2|U7SWL2_FUSNUDNArepairproteinRadCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01086PE=3SV=1	tr|U7SWL2|U7SWL2_FUSNUDNArepairproteinRadCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01086PE=3SV=1	tr|U7SWL2|U7SWL2_FUSNUDNArepairproteinRadCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01086PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	357.9488220214844	3	357.897258	1070.66995	0.39692	0.00014205	-0.43224	-0.0001547	-0.035323	-1.2642E-05	357.8970670989343	22.242	2.5874	22.242	21.048	23.635	0					129	50	4	0	0	0	0.71354	1	6458	6458		6.2344	0.042509	1	104940000			22794	29811	16539	16656	22365	22365					0.1374374857962266
ISLNQWEDF	9	Unmodified	_ISLNQWEDF_					0	0	0			REV__ENST00000479830.2_1_5:68339466-68339598:-|nuORF	REV__ENST00000479830.2_1_5:68339466-68339598:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	575.7166137695312	2	576.272021	1150.52949	-0.2259	-0.00013018	-3.6335	-0.0020939	-3.8594	-0.002224	576.7718180222637	64.742	0.50878	64.742	64.343	64.851	0					11	9	2	0	0	0	0.76187	1	23364	23364		11.64	0.81637	1	1359700	+		22795	25237	16540	16657	22366	22366					-0.039754551446321784
ISLNTLIKY	9	Unmodified	_ISLNTLIKY_					0	0	0			REV__HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|106|2|sense	REV__HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|106|2|sense	MSMS	A375_MHC_IP_R2	2	355.61663818359375	3	355.549859	1063.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.838	1	25.481	24.981	25.981	0.64368								0	0	0	0.15438	1	8226	8226		14.405	2.2306	1		+		22796	26736	16541	16658	22367	22367					0.0984777317123644
ISLPDDVRRRL	11	Unmodified	_ISLPDDVRRRL_					0	0	0		ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358|DNMT1	ENSG00000130816|ENST00000359526|DNMT1	ENSG00000130816|ENST00000359526|DNMT1	MULTI-MSMS	A375_MHC_IP_R1	1	447.3012390136719	3	447.265004	1338.77318	-0.24917	-0.00011144	-0.39974	-0.00017879	-0.64891	-0.00029023	447.26484816347164	53.075	0.35231	53.075	52.847	53.199	0					8	6	2	0	0	0	0.72934	1	18940	18940		9.5301	1.2437	1	1139100			22797	4284	16542	16659	22368	22368					0.11734629020111242
ISLPMKLRD	9	Unmodified	_ISLPMKLRD_					0	0	0		ENST00000492366.5_1_4:104012383-104013811:-|nuORF	ENST00000492366.5_1_4:104012383-104013811:-|nuORF	ENST00000492366.5_1_4:104012383-104013811:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	358.276611328125	3	358.21096	1071.61105	-0.15707	-5.6263E-05	-0.36222	-0.00012975	-0.51928	-0.00018601	358.21101770167724	24.067	0.55766	24.067	23.94	24.498	0					11	10	2	0	0	0	0.63327	1	6744	6744		12.873	5.2637	1	11184000			22798	12671	16543	16660	22369	22369					0.07810949013651225
ISLPNGLQGF	10	Unmodified	_ISLPNGLQGF_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11;PDCD11|p.Q1278Rfs*16|1|0.47|ENSG00000148843|chr10:103434958-103434958|C/-|frameshift_variant	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	A375_MHC_IP_R1	1	523.7029418945312	2	523.287474	1044.5604	-0.51567	-0.00026984	-0.85676	-0.00044833	-1.3724	-0.00071817	523.2870878869951	118.99	0.25374	118.99	118.88	119.13	0					6	4	2	0	0	0	0.098574	1	43919	43919		63.961	35.474	1	4182300			22799	5771	16544	16661	22370	22370					0.039897429602888224
ISLQWNRVY	9	Unmodified	_ISLQWNRVY_					0	0	0		nc|ENSG00000163531|O94856-3|NFASC;ENST00000512826.5_1_1:204926851-204957975:+|nuORF;nc|ENSG00000163531|O94856-10|NFASC;nc|ENSG00000163531|O94856-8|NFASC;nc|ENSG00000163531|O94856-11|NFASC;nc|ENSG00000163531|O94856-6|NFASC;nc|ENSG00000163531|O94856-7|NFASC;nc|ENSG00000163531|O94856-13|NFASC;nc|ENSG00000163531|O94856-5|NFASC;nc|ENSG00000163531|O94856|NFASC	nc|ENSG00000163531|O94856-3|NFASC	nc|ENSG00000163531|O94856-3|NFASC	MULTI-MSMS	A375_MHC_IP_R2	2	393.9037780761719	3	393.548741	1177.62439	-0.4052	-0.00015947	-0.018725	-7.3693E-06	-0.42392	-0.00016683	393.5487465110093	51.548	0.60913	52.3	52.068	52.677	0.75225					32	11	4	0	0	0	0.64808	1	19514	19514		7.609	0	1	21841000			22800	14720	16545	16662	22371	22371					0.04268523117229961
ISLRLVKLY	9	Unmodified	_ISLRLVKLY_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11;ENST00000553480.1_1_14:45329665-45330565:-|nuORF	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MSMS	A375_MHC_IP_R1	1	368.9437255859375	3	368.909498	1103.70667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.357	1	24.357	23.857	24.857	0								0	0	0	0.15486	1	6895	6895		2.7352	0	1				22801	5673	16546	16663	22372	22372					0.1589604519617751
ISLRRSDGFI	10	Unmodified	_ISLRRSDGFI_					0	0	0		chr13:60408237-60439688|309|46.76|0.8|5.86|+|1|TE_info:THE1A,THE1A_dup3414,ERVL-MaLR,LTR,donor,+,60408100,60408237|None,TDRD3|1;chr1:236163754-236168706|202|23.65|0.18|7.05|+|1|TE_info:THE1A,THE1A_dup306,ERVL-MaLR,LTR,donor,+,236163474,236163754|None,GPR137B|5	chr13:60408237-60439688|309|46.76|0.8|5.86|+|1|TE_info:THE1A,THE1A_dup3414,ERVL-MaLR,LTR,donor,+,60408100,60408237|None,TDRD3|1	chr13:60408237-60439688|309|46.76|0.8|5.86|+|1|TE_info:THE1A,THE1A_dup3414,ERVL-MaLR,LTR,donor,+,60408100,60408237|None,TDRD3|1	MULTI-MSMS	A375_MHC_IP_R1	1	388.92791748046875	3	388.555895	1162.64586	-0.01631	-6.3374E-06	0.046647	1.8125E-05	0.030337	1.1788E-05	388.5559366395127	27.955	1.0101	27.955	27.735	28.745	0					50	19	6	0	0	0	0.70442	1	8639	8639		10.315	1.339	1	62830000			22802	394	16547	16664	22373	22373					0.071039081459503
ISLSQMVEQSY	11	Unmodified	_ISLSQMVEQSY_					0	0	0			REV__nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	REV__nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	MULTI-MSMS	A375_MHC_IP_R1	1	643.2103881835938	2	642.810653	1283.60675	-0.44152	-0.00028381	-0.28257	-0.00018164	-0.72409	-0.00046545	642.8105622879001	55.908	0.40493	55.908	55.738	56.143	0					12	7	2	0	0	0	0.66366	1	20021	20021		18.373	6.1324	1	3719600	+		22803	22924	16548	16665	22374	22374					-0.02370604990596803
ISLSQMVEQSY	11	Unmodified	_ISLSQMVEQSY_					0	0	0			REV__nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	REV__nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	MULTI-MSMS	A375_MHC_IP_R2	2	643.2098999023438	2	642.810653	1283.60675	-0.8241	-0.00052974	-0.021293	-1.3687E-05	-0.84539	-0.00054343	642.8095801671669	55.259	0.66317	56.009	55.523	56.187	0.75075					30	12	4	0	0	0	0.66366	1	20896	20896		18.373	2.224	1	5239300	+		22804	22924	16548	16665	22375	22375					-0.02370604990596803
ISLSQMVEQSY	11	Unmodified	_ISLSQMVEQSY_					0	0	0			REV__nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	REV__nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	642.810653	1283.60675	-0.44152	-0.00028381	-0.28257	-0.00018164	-0.72409	-0.00046545	642.8105622879001	55.908	0.40493	55.908	55.738	56.143	0	-0.050751	-2.5667E-05	NaN	18.373	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3719600	+		22805	22924	16548	16665							-0.02370604990596803
ISLTPRSL	8	Unmodified	_ISLTPRSL_					0	0	0			REV__nc|ENSG00000136715|Q9H0E3|SAP130	REV__nc|ENSG00000136715|Q9H0E3|SAP130	MULTI-MSMS	A375_MHC_IP_R2	2	443.67926025390625	2	443.77146	885.528367	-0.32189	-0.00014285	-0.31821	-0.00014121	-0.6401	-0.00028406	443.7716213078634	64.567	0.45831	65.307	65.106	65.564	0.74022					13	8	2	0	0	0	0.74945	1	24531	24531		20.454	0	1	1028200	+		22806	18953	16549	16666	22376	22376					0.08102375277132978
ISLVGNRAPV	10	Unmodified	_ISLVGNRAPV_					0	0	0		ENST00000461334.1_1_1:206778082-206781641:-|nuORF;nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D	ENST00000461334.1_1_1:206778082-206781641:-|nuORF	ENST00000461334.1_1_1:206778082-206781641:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	513.7083740234375	2	513.308741	1024.60293	-0.62492	-0.00032077	0.096117	4.9338E-05	-0.5288	-0.00027144	513.30876609704	80.821	1.0652	80.821	80.441	81.506	0					54	20	4	0	0	0	0.63639	1	29694	29694		18.146	1.9972	1	39312000			22807	5399	16550	16667	22377	22377					0.09161138088529697
ISLWELFY	8	Unmodified	_ISLWELFY_					0	0	0		ELMOD2|p.F8L|1|0.28|ENSG00000179387|chr4:140525450-140525450|T/C|missense_variant	ELMOD2|p.F8L|1|0.28|ENSG00000179387|chr4:140525450-140525450|T/C|missense_variant	ELMOD2|p.F8L|1|0.28|ENSG00000179387|chr4:140525450-140525450|T/C|missense_variant	MSMS	A375_MHC_IP_R2	2	535.7215576171875	2	535.781493	1069.54843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.316	1	80.061	79.561	80.561	0.74474								0	0	0	0.16876	1	30099	30099		26.341	0.073138	1				22808	834	16551	16668	22378	22378					0.016441262170928894
ISLWKGVALL	10	Unmodified	_ISLWKGVALL_					0	0	0			REV__ENSG00000179163|ENST00000374479|FUCA1	REV__ENSG00000179163|ENST00000374479|FUCA1	MULTI-SECPEP	A375_MHC_IP_R2	2	366.95245361328125	3	367.233982	1098.68012	-0.18192	-6.6806E-05	0.69233	0.00025425	0.51042	0.00018744	367.2342441345512	23.139	0.20366	23.769	23.675	23.878	0.63015					5	3	2	0	0	0	0.92389	1	7410	7410		0.13989	0.13989	1	1371600	+		22809	21546	16552	16669	22379	22379					0.1347235630485102
ISLWVKRRR	9	Unmodified	_ISLWVKRRR_					0	0	0			REV__ENSG00000128908|ENST00000648947|INO80	REV__ENSG00000128908|ENST00000648947|INO80	MULTI-SECPEP	A375_MHC_IP_R2	2	404.5907287597656	3	405.259524	1212.75674	-0.3125	-0.00012664	1.7655	0.00071549	1.453	0.00058885	405.25888238550687	20.349	0.6611	20.959	20.651	21.312	0.6103					32	12	4	0	0	0	0.81166	1	6443	6443		2.7352	1.5204	1	941030	+		22810	18474	16553	16670	22380	22380					0.15887592644685355
ISMEPKVEW	9	Unmodified	_ISMEPKVEW_					0	0	0		nc|ENSG00000099139|Q92824|PCSK5;nc|ENSG00000099139|Q92824-2|PCSK5;ENSG00000099139|ENST00000674117|PCSK5	nc|ENSG00000099139|Q92824|PCSK5	nc|ENSG00000099139|Q92824|PCSK5	MULTI-MSMS	A375_MHC_IP_R2	2	560.1809692382812	2	559.781167	1117.54778	-0.51717	-0.0002895	-0.76404	-0.0004277	-1.2812	-0.0007172	559.7812938943788	86.144	2.9429	86.877	86.338	89.281	0.733					97	57	3	0	0	0	0.46465	1	33180	33180		21.537	5.3879	1	4160100			22811	14501	16554	16671	22381	22381					-0.006290364942742599
ISMHACMKV	9	Unmodified	_ISMHACMKV_					0	0	0			REV__nc|ENSG00000131059|Q9BQP9-2|BPIFA3	REV__nc|ENSG00000131059|Q9BQP9-2|BPIFA3	MSMS	A375_MHC_IP_R1	1	510.2361145019531	2	510.245383	1018.47621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.16	1	89.16	88.66	89.66	0								0	0	0	0.15486	1	32751	32751		12.532	0.89125	1		+		22812	18584	16555	16672	22382	22382					-0.03228570724138535
ISMLHFSP	8	Unmodified	_ISMLHFSP_					0	0	0			REV__ENST00000216554.7_1_14:103807753-103807888:+|nuORF	REV__ENST00000216554.7_1_14:103807753-103807888:+|nuORF	MSMS	A375_MHC_IP_R1	1	466.3049011230469	2	466.238938	930.463324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.408	1	22.408	21.908	22.908	0								0	0	0	0.16876	1	6012	6012		12.532	2.3482	1		+		22813	23036	16556	16673	22383	22383					-0.004689425203650899
ISMRLHKELEV	11	Unmodified	_ISMRLHKELEV_					0	0	0		nc|ENSG00000149639|O94964-4|MTCL2;nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1;ENST00000463491.1_1_20:35457204-35467793:-|nuORF	nc|ENSG00000149639|O94964-4|MTCL2	nc|ENSG00000149639|O94964-4|MTCL2	MULTI-MSMS	A375_MHC_IP_R1	1	452.9648742675781	3	452.255228	1353.74386	-0.18257	-8.2568E-05	-0.26969	-0.00012197	-0.45226	-0.00020454	452.2551856481542	59.439	0.60892	59.439	59.143	59.752	0					21	11	3	0	0	0	0.7328	1	21292	21292		6.2344	1.5184	1	3926200			22814	5824	16557	16674	22384	22384					0.0811334867964888
ISMSMLEQF	9	Unmodified	_ISMSMLEQF_					0	0	0			REV__ENSG00000047315|ENST00000314595|POLR2B	REV__ENSG00000047315|ENST00000314595|POLR2B	MULTI-SECPEP	A375_MHC_IP_R2	2	361.9727478027344	3	362.505044	1084.4933	-0.57351	-0.0002079	0.58885	0.00021346	0.015338	5.56E-06	362.50512684252817	25.37	0.25459	26.013	25.873	26.128	0.64368					7	4	2	0	0	0	0.73363	1	8493	8493		4.1895	2.4472	1	2527500	+		22815	16359	16558	16675	22385	22385					-0.045563716373180796
ISMYLPGAEV	10	Unmodified	_ISMYLPGAEV_					0	0	0		ENSG00000181449|ENST00000325404|SOX2	ENSG00000181449|ENST00000325404|SOX2	ENSG00000181449|ENST00000325404|SOX2	MSMS	A375_MHC_IP_R1	1	540.174072265625	2	540.275718	1078.53688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.487	1	43.487	42.987	43.987	0								0	0	0	0.14601	1	15117	15117		25.399	2.2509	1				22816	8347	16559	16676	22386	22386					0.0007556113146165444
ISNETSLRF	9	Unmodified	_ISNETSLRF_					0	0	0			REV__ENSG00000166450|ENST00000389286|PRTG	REV__ENSG00000166450|ENST00000389286|PRTG	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1431274414062	2	533.780013	1065.54547	-0.57636	-0.00030765	-1.067	-0.00056953	-1.6433	-0.00087718	533.7792474471298	43.615	0.30259	44.386	44.179	44.481	0.77042					8	5	2	0	0	0	0.74412	1	16184	16184		6.2058	0	1	1323700	+		22817	20679	16560	16677	22387	22387					0.015322510922715082
ISNFLENL	8	Unmodified	_ISNFLENL_					0	0	0		tr|U7STA3|U7STA3_FUSNUdTTP/UTPpyrophosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01343PE=3SV=1	tr|U7STA3|U7STA3_FUSNUdTTP/UTPpyrophosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01343PE=3SV=1	tr|U7STA3|U7STA3_FUSNUdTTP/UTPpyrophosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01343PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	474.6505432128906	2	475.2531	948.491647	-0.77479	-0.00036822	-0.17066	-8.1108E-05	-0.94546	-0.00044933	475.25345438566706	35.346	0.6057	36.109	35.677	36.283	0.76338					13	11	2	0	0	0	0.8957	1	12801	12801		15.847	2.3393	1	855470			22818	29670	16561	16678	22388	22388					0.01534078660574778
ISNFLIGRPFT	11	Unmodified	_ISNFLIGRPFT_					0	0	0			REV__tr|U7T2G3|U7T2G3_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00556PE=3SV=1	REV__tr|U7T2G3|U7T2G3_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00556PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	423.2874755859375	3	422.239796	1263.69756	-0.086279	-3.6431E-05	-0.22135	-9.3463E-05	-0.30763	-0.00012989	422.2396639426792	32.085	0.41196	32.085	31.87	32.282	0					21	7	4	0	0	0	0.73195	1	10290	10290		7.0371	1.1689	1	10045000	+		22819	28740	16562	16679	22389	22389					0.0762565183983952
ISNGAVQKQF	10	Unmodified	_ISNGAVQKQF_					0	0	0			REV__nc|ENSG00000005379|O95153-2|TSPOAP1	REV__nc|ENSG00000005379|O95153-2|TSPOAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	546.2338256835938	2	546.29583	1090.57711	-0.60801	-0.00033215	3.5339	0.0019306	2.9259	0.0015984	546.2977160417998	58.591	0.35699	58.591	58.379	58.736	0					9	6	2	0	0	0	0.8125	1	21034	21034		18.146	9.9908	1	740340	+		22820	16121	16563	16680	22390	22390					0.03544243846226891
ISNGGLADIF	10	Unmodified	_ISNGGLADIF_					0	0	0		ENSG00000072778|ENST00000356839|ACADVL;nc|ENSG00000072778|P49748-3|ACADVL;nc|ENSG00000072778|P49748-2|ACADVL;ACADVL|p.I373Nfs*22|1|0.49|ENSG00000072778|chr17:7223168-7223169|-/A|frameshift_variant	ENSG00000072778|ENST00000356839|ACADVL	ENSG00000072778|ENST00000356839|ACADVL	MULTI-SECPEP	A375_MHC_IP_R1	1	504.163330078125	2	503.763832	1005.51311	-0.48926	-0.00024647	-0.2379	-0.00011985	-0.72716	-0.00036632	503.7637359821288	32.256	0.61337	32.256	31.921	32.535	0					18	11	2	0	0	0	0.19943	1	10382	10382		60.074	2.3519	1	4312700			22821	1546	16564	16681	22391	22391					0.010574636892670242
ISNGPARERRK	11	Unmodified	_ISNGPARERRK_					0	0	0			REV__nc|ENSG00000165521|Q05BV3-2|EML5	REV__nc|ENSG00000165521|Q05BV3-2|EML5	MSMS	A375_MHC_IP_R2	2	642.3609008789062	2	642.368184	1282.72182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.38	1	124.71	124.21	125.21	0.32969								0	0	0	0.15837	1	48086	48086		15.248	0	1		+		22822	20592	16565	16682	22392	22392					0.09176305046048583
ISNGSYDCDV	10	Unmodified	_ISNGSYDCDV_					0	0	0			REV__ENSG00000100426|ENST00000216268|ZBED4	REV__ENSG00000100426|ENST00000216268|ZBED4	MULTI-SECPEP	A375_MHC_IP_R2	2	536.7051391601562	2	536.716221	1071.41789	-0.836	-0.0004487	0.56364	0.00030251	-0.27236	-0.00014618	536.7167588088394	45.994	0.40295	46.759	46.453	46.855	0.76519					11	7	2	0	0	0	0.91556	1	17201	17201		6.2058	0	1	1189400	+		22823	17091	16566	16683	22393	22393					-0.11496257564090229
ISNIIKQF	8	Unmodified	_ISNIIKQF_					0	0	0		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-MSMS	A375_MHC_IP_R1	1	482.1871032714844	2	481.78711	961.559667	-0.38804	-0.00018695	0.18623	8.9725E-05	-0.2018	-9.7227E-05	481.78715367494095	64.267	0.91282	64.267	63.939	64.851	0					52	17	4	0	0	0	2.6706E-06	1	23193	23193		198.25	18.241	1	41634000			22824	1784	16567	16684	22394	22394					0.07734948311224343
ISNIIKQF	8	Unmodified	_ISNIIKQF_					0	0	0		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-SECPEP	A375_MHC_IP_R2	2	482.1870422363281	2	481.78711	961.559667	-0.52068	-0.00025086	-0.14671	-7.0685E-05	-0.66739	-0.00032154	481.7869952034959	63.372	1.3208	64.113	63.734	65.054	0.74022					63	25	4	0	0	0	9.87E-07	1	23960	23960		198.25	18.241	1	34359000			22825	1784	16567	16684	22395	22395					0.07734948311224343
ISNKMYRPFH	10	Unmodified	_ISNKMYRPFH_					0	0	0			REV__ENST00000506538.6_1_5:110440999-110441761:+|nuORF	REV__ENST00000506538.6_1_5:110440999-110441761:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	430.96051025390625	3	431.55713	1291.64956	-0.43385	-0.00018723	0.90427	0.00039024	0.47042	0.00020301	431.5578945448101	40.814	0.91538	41.588	41.183	42.098	0.77451					31	17	3	0	0	0	0.92603	1	15089	15089		8.9762	1.9392	1	2796400	+		22826	25554	16568	16685	22396	22396					0.015402546481482204
ISNLASSLVP	10	Unmodified	_ISNLASSLVP_					0	0	0			REV__ENSG00000132874|ENST00000255226|SLC14A2	REV__ENSG00000132874|ENST00000255226|SLC14A2	MULTI-MSMS	A375_MHC_IP_R2	2	500.6828918457031	2	500.787307	999.560061	-0.56642	-0.00028366	-0.12167	-6.0928E-05	-0.68809	-0.00034458	501.2903328758942	124.29	0.70792	124.62	124.24	124.95	0.32969					17	13	2	0	0	0	0.70496	1	48228	48228		10.074	0.6908	1	15951000	+		22827	18689	16569	16686	22397	22397					0.06026323240428155
ISNPKTAEF	9	Unmodified	_ISNPKTAEF_					0	0	0		FARSB|p.H438Y|1|0.31|ENSG00000116120|chr2:222619677-222619677|G/A|missense_variant;nc|ENSG00000116120|Q9NSD9-2|FARSB;ENSG00000116120|ENST00000281828|FARSB	FARSB|p.H438Y|1|0.31|ENSG00000116120|chr2:222619677-222619677|G/A|missense_variant	FARSB|p.H438Y|1|0.31|ENSG00000116120|chr2:222619677-222619677|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1637268066406	2	503.763832	1005.51311	-0.69152	-0.00034836	0.3339	0.00016821	-0.35762	-0.00018016	503.76383056004784	31.471	0.66441	32.189	31.77	32.434	0.71857					19	12	3	0	0	0	0.11849	1	11136	11136		45.74	3.7843	1	5710800			22828	3370	16570	16687	22398	22398					0.010574636892670242
ISNQLFCILV	10	Unmodified	_ISNQLFCILV_					0	0	0		ENST00000540651.5_1_1:228286658-228286874:+|nuORF	ENST00000540651.5_1_1:228286658-228286874:+|nuORF	ENST00000540651.5_1_1:228286658-228286874:+|nuORF	MSMS	A375_MHC_IP_R2	2	383.9228210449219	3	383.882732	1148.62637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.563	1	22.183	21.683	22.683	0.61932								0	0	0	0.15207	1	6799	6799		12.175	6.3913	1				22829	13274	16571	16688	22399	22399					0.057998158108148345
ISNQVSETW	9	Unmodified	_ISNQVSETW_					0	0	0			REV__nc|ENSG00000184428|Q969P6-2|TOP1MT	REV__nc|ENSG00000184428|Q969P6-2|TOP1MT	MULTI-MSMS	A375_MHC_IP_R1	1	532.6556396484375	2	532.256371	1062.49819	-0.63916	-0.00034019	-0.81757	-0.00043516	-1.4567	-0.00077535	532.256037615942	128.86	0.20456	128.86	128.73	128.94	0					8	3	3	0	0	0	0.60101	1	49542	49542		14.838	0.93222	1	8178900	+		22830	21819	16572	16689	22400	22400					-0.030560281787074928
ISNQVSETW	9	Unmodified	_ISNQVSETW_					0	0	0			REV__nc|ENSG00000184428|Q969P6-2|TOP1MT	REV__nc|ENSG00000184428|Q969P6-2|TOP1MT	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	532.256371	1062.49819	-0.63916	-0.00034019	-0.81757	-0.00043516	-1.4567	-0.00077535	532.256037615942	128.86	0.20456	128.86	128.73	128.94	0	0.014166	3.6862E-05	NaN	14.838	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8178900	+		22831	21819	16572	16689							-0.030560281787074928
ISNQVSETW	9	Unmodified	_ISNQVSETW_					0	0	0			REV__nc|ENSG00000184428|Q969P6-2|TOP1MT	REV__nc|ENSG00000184428|Q969P6-2|TOP1MT	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	532.256371	1062.49819	-0.75263	-0.00040059	-0.923	-0.00049127	-1.6756	-0.00089187	532.2558533601402	128.59	0.15132	128.83	128.76	128.91	0.23946	-0.014166	-7.5368E-05	NaN	14.838	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4349100	+		22832	21819	16572	16689							-0.030560281787074928
ISNRFRSSW	9	Unmodified	_ISNRFRSSW_					0	0	0			REV__chr11:89283948-89284773|429|119.07|0.07|10.81|+|1|TYR,TYR|1	REV__chr11:89283948-89284773|429|119.07|0.07|10.81|+|1|TYR,TYR|1	MULTI-SECPEP	A375_MHC_IP_R1	1	577.2054443359375	2	576.799072	1151.58359	-0.16974	-9.7906E-05	0.13625	7.8588E-05	-0.033492	-1.9318E-05	576.7990327647649	46.299	0.30052	46.299	46.144	46.444	0					9	5	2	0	0	0	0.56537	1	16188	16188		17.113	6.289	1	3792900	+		22833	15681	16573	16690	22401	22401					0.013861817976021484
ISNSSGSWLRY	11	Unmodified	_ISNSSGSWLRY_					0	0	0		MOGAT2|p.P236S|1|0.32|ENSG00000166391|chr11:75728845-75728845|C/T|missense_variant	MOGAT2|p.P236S|1|0.32|ENSG00000166391|chr11:75728845-75728845|C/T|missense_variant	MOGAT2|p.P236S|1|0.32|ENSG00000166391|chr11:75728845-75728845|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	424.2789306640625	3	423.878926	1268.61495	-0.23062	-9.7753E-05	0.739	0.00031324	0.50838	0.00021549	423.879081770694	39.403	0.50778	40.177	39.812	40.32	0.77451					19	9	3	0	0	0	0.9836	1	14555	14555		9.2438	0.95734	1	7044600			22834	14394	16574	16691	22402	22402					-0.008612899589479639
ISNVFVHRY	9	Unmodified	_ISNVFVHRY_					0	0	0			REV__LRRIQ3|p.L144F|1|0.08|ENSG00000162620|chr1:74182681-74182681|G/A|missense_variant	REV__LRRIQ3|p.L144F|1|0.08|ENSG00000162620|chr1:74182681-74182681|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	378.9580078125	3	378.873336	1133.59818	0.60752	0.00023017	3.9268	0.0014878	4.5343	0.0017179	379.20968987340984	21.579	0.25251	21.579	21.454	21.706	0					6	4	2	0	0	0	0.75519	1	5737	5737		3.8763	1.2451	1	506090	+		22835	26957	16575	16692	22403	22403					0.03672253945751436
ISNYIRYYER	10	Unmodified	_ISNYIRYYER_					0	0	0		ZNF20|p.H496Y|1|0.25|ENSG00000132010|chr19:12132700-12132700|G/A|missense_variant	ZNF20|p.H496Y|1|0.25|ENSG00000132010|chr19:12132700-12132700|G/A|missense_variant	ZNF20|p.H496Y|1|0.25|ENSG00000132010|chr19:12132700-12132700|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	458.9697265625	3	459.570093	1375.68845	-0.32393	-0.00014887	4.3333	0.0019914	4.0094	0.0018426	459.9064060208073	32.124	0.15525	32.124	32.024	32.179	0					4	2	2	0	0	0	0.93873	1	10344	10344		5.0475	0	1	576550			22836	30205	16576	16693	22404	22404					0.01563258483520258
ISPAIRVSY	9	Unmodified	_ISPAIRVSY_					0	0	0		tr|U7SWT9|U7SWT9_FUSNUGntRfamilytranscriptionalregulator/MocRfamilyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01171PE=3SV=1	tr|U7SWT9|U7SWT9_FUSNUGntRfamilytranscriptionalregulator/MocRfamilyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01171PE=3SV=1	tr|U7SWT9|U7SWT9_FUSNUGntRfamilytranscriptionalregulator/MocRfamilyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01171PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	1004.830078125	1	1005.57276	1004.56548	-0.02713	-2.7281E-05	-2.9201	-0.0029364	-2.9473	-0.0029637	1005.5695641124638	127.73	0.30362	127.99	127.87	128.17	0.26593					8	5	2	0	0	0	0.50702	1	50132	50132		25.399	4.9457	1	12615000			22837	29817	16577	16694	22405	22405					0.06338046822895649
ISPDPNLR	8	Unmodified	_ISPDPNLR_					0	0	0		ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	MULTI-SECPEP	A375_MHC_IP_R2	2	910.7554321289062	1	911.494507	910.48723	-0.21427	-0.00019531	0.19608	0.00017873	-0.018188	-1.6578E-05	911.4937395929074	47.438	0.407	48.2	48.073	48.48	0.76128					10	7	2	0	0	0	0.8824	1	17837	17837		23.148	7.3012	1	2325900			22838	5754	16578	16695	22406	22406					0.02840614237675254
ISPDYKIGLDI	11	Unmodified	_ISPDYKIGLDI_					0	0	0			REV__nc|ENSG00000142676|P62913-2|RPL11	REV__nc|ENSG00000142676|P62913-2|RPL11	MULTI-SECPEP	A375_MHC_IP_R2	2	411.6131896972656	3	411.895695	1232.66525	-0.31755	-0.0001308	-0.022098	-9.1023E-06	-0.33965	-0.0001399	411.89563401730334	38.692	0.66288	39.467	39.149	39.812	0.77451					26	12	3	0	0	0	0.99411	1	14226	14226		9.7643	0.788	1	5287100	+		22839	19320	16579	16696	22407	22407					0.05822819646186872
ISPEEKKAKLI	11	Unmodified	_ISPEEKKAKLI_					0	0	0		tr|U7T730|U7T730_FUSNUMajorcapsidproteinEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00096PE=4SV=1	tr|U7T730|U7T730_FUSNUMajorcapsidproteinEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00096PE=4SV=1	tr|U7T730|U7T730_FUSNUMajorcapsidproteinEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00096PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	628.7823486328125	2	628.384645	1254.75474	-0.44447	-0.0002793	-2.3055	-0.0014487	-2.75	-0.001728	628.3831633427002	128.22	0.50552	128.22	127.87	128.38	0					19	9	3	0	0	0	0.73332	1	49228	49228		5.7319	0.43497	1	5412600			22840	30057	16580	16697	22408	22408					0.1375507432555878
ISPEFFTVLH	10	Unmodified	_ISPEFFTVLH_					0	0	0		ENSG00000138411|ENST00000644978|HECW2	ENSG00000138411|ENST00000644978|HECW2	ENSG00000138411|ENST00000644978|HECW2	MULTI-SECPEP	A375_MHC_IP_R2	2	396.5935363769531	3	397.213246	1188.61791	-0.45144	-0.00017932	2.8193	0.0011199	2.3679	0.00094055	397.21468724944884	22.712	0.30656	23.342	23.265	23.572	0.63014					6	5	2	0	0	0	0.85226	1	7232	7232		5.7834	0	1	797900			22841	4991	16581	16698	22409	22409					0.031145851658493484
ISPELSVK	8	Unmodified	_ISPELSVK_					0	0	0			REV__nc|ENSG00000113597|A5PLN9-7|TRAPPC13	REV__nc|ENSG00000113597|A5PLN9-7|TRAPPC13	MSMS	A375_MHC_IP_R1	1	436.689697265625	2	436.758018	871.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.512	1	33.512	33.012	34.012	0								0	0	0	0.16876	1	10948	10948		25.399	4.9457	1		+		22842	17792	16582	16699	22410	22410					0.0605926666595451
ISPFFLPFW	9	Unmodified	_ISPFFLPFW_					0	0	0		MED13L|p.S1400F|1|0.52|ENSG00000123066|chr12:115986405-115986405|G/A|missense_variant	MED13L|p.S1400F|1|0.52|ENSG00000123066|chr12:115986405-115986405|G/A|missense_variant	MED13L|p.S1400F|1|0.52|ENSG00000123066|chr12:115986405-115986405|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	577.1508178710938	2	577.307678	1152.6008	-0.38294	-0.00022107	0.96252	0.00055567	0.57958	0.0003346	577.3083151390227	54.423	0.71052	55.174	54.916	55.626	0.75075					16	13	2	0	0	0	0.74651	1	20482	20482		4.756	0.42677	1	2684000			22843	14368	16583	16700	22411	22411					0.030607093506887395
ISPFSLRPDE	10	Unmodified	_ISPFSLRPDE_					0	0	0			REV__ENSG00000133884|ENST00000528416|DPF2	REV__ENSG00000133884|ENST00000528416|DPF2	MSMS	A375_MHC_IP_R2	2	581.2008056640625	2	580.800946	1159.58734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.032	1	24.675	24.175	25.175	0.6428								0	0	0	0.1524	1	7829	7829		13.042	1.4022	1		+		22844	18739	16584	16701	22412	22412					0.013928067808137712
ISPGRVSIVSK	11	Unmodified	_ISPGRVSIVSK_					0	0	0			REV__ENST00000260443.8_1_15:55489030-55489114:-|nuORF	REV__ENST00000260443.8_1_15:55489030-55489114:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	381.91412353515625	3	381.567912	1141.68191	-0.33061	-0.00012615	-1.9957	-0.00076148	-2.3263	-0.00088763	381.901048550347	19.152	0.40235	19.755	19.583	19.986	0.60308					11	7	2	0	0	0	0.73195	1	5734	5734		7.0371	0.8313	1	1236600	+		22845	23174	16585	16702	22413	22413					0.11673365322803875
ISPLWEPSL	9	Unmodified	_ISPLWEPSL_					0	0	0		ENST00000572400.5_1_16:14234415-14234826:+|nuORF	ENST00000572400.5_1_16:14234415-14234826:+|nuORF	ENST00000572400.5_1_16:14234415-14234826:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	520.639404296875	2	521.2844	1040.55425	-0.53814	-0.00028052	-0.83695	-0.00043629	-1.3751	-0.00071681	521.7853516682633	94.095	0.40211	94.095	93.789	94.191	0					12	7	2	0	0	0	0.65246	1	34576	34576		3.5965	0.31518	1	1003100			22846	13617	16586	16703	22414	22414					0.035592247287468126
ISPMELENN	9	Unmodified	_ISPMELENN_					0	0	0		DIP2B|p.P1225S|1|0.65|ENSG00000066084|chr12:50731400-50731400|C/T|missense_variant	DIP2B|p.P1225S|1|0.65|ENSG00000066084|chr12:50731400-50731400|C/T|missense_variant	DIP2B|p.P1225S|1|0.65|ENSG00000066084|chr12:50731400-50731400|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	523.674560546875	2	523.744782	1045.47501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.24	1	48.24	47.74	48.74	0								0	0	0	0.15486	1	17006	17006		11.64	1.4569	1				22847	747	16587	16704	22415	22415					-0.04590790287670643
ISPPCGLEW	9	Unmodified	_ISPPCGLEW_					0	0	0			REV__ENST00000431677.1_1_X:100673784-100702742:+|nuORF	REV__ENST00000431677.1_1_X:100673784-100702742:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.6566467285156	2	501.241678	1000.4688	-0.4062	-0.00020361	-0.2236	-0.00011208	-0.6298	-0.00031568	501.2415194683333	61.436	0.97004	61.436	60.973	61.943	0					44	18	3	0	0	0	0.46038	1	22017	22017		21.747	9.2151	1	21498000	+		22848	24706	16588	16705	22416	22416					-0.03141263728548438
ISPPCGLEW	9	Unmodified	_ISPPCGLEW_					0	0	0			REV__ENST00000431677.1_1_X:100673784-100702742:+|nuORF	REV__ENST00000431677.1_1_X:100673784-100702742:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.1678161621094	2	501.241678	1000.4688	-0.6526	-0.00032711	0.11915	5.9724E-05	-0.53345	-0.00026739	501.24188366345146	66.749	2.3401	66.749	66.072	68.412	0					81	45	3	0	0	0	0.29981	1	24121	24121		30.637	0.79596	1	2892200	+		22849	24706	16588	16705	22417	22417					-0.03141263728548438
ISPPCGLEW	9	Unmodified	_ISPPCGLEW_					0	0	0			REV__ENST00000431677.1_1_X:100673784-100702742:+|nuORF	REV__ENST00000431677.1_1_X:100673784-100702742:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	501.6562194824219	2	501.241678	1000.4688	-0.89491	-0.00044856	-0.032069	-1.6074E-05	-0.92698	-0.00046464	501.2416721715146	60.626	1.0665	61.371	60.853	61.919	0.74503					51	20	4	0	0	0	0.46038	1	22823	22823		21.747	2.3076	1	22163000	+		22850	24706	16588	16705	22418	22418					-0.03141263728548438
ISPPVDVIASC	11	Unmodified	_ISPPVDVIASC_					0	0	0		nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-SECPEP	A375_MHC_IP_R2	2	551.1861572265625	2	550.78645	1099.55835	-0.63691	-0.0003508	-0.0064549	-3.5553E-06	-0.64336	-0.00035436	550.7877617538832	43.403	1.315	44.175	43.268	44.583	0.7724					48	25	4	0	0	0	0.55166	1	16171	16171		31.268	9.7314	1	3530300			22851	2039	16589	16706	22419	22419					0.012549461601565781
ISPRASAV	8	Unmodified	_ISPRASAV_					0	0	0			REV__ENSG00000047849|ENST00000683076|MAP4	REV__ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	A375_MHC_IP_R2	2	401.1347961425781	2	400.734877	799.455202	-0.40896	-0.00016388	0.29922	0.00011991	-0.10974	-4.3975E-05	400.73489511837124	38.431	0.55796	39.205	38.895	39.453	0.77451					17	10	2	0	0	0	0.71817	1	14158	14158		29.082	3.6823	1	5446000	+		22852	16365	16590	16707	22420	22420					0.047452465545120504
ISPRQGAPEP	10	Unmodified	_ISPRQGAPEP_					0	0	0			REV__ENSG00000188037|ENST00000343257|CLCN1	REV__ENSG00000188037|ENST00000343257|CLCN1	MULTI-SECPEP	A375_MHC_IP_R1	1	526.65087890625	2	526.28018	1050.54581	-0.29848	-0.00015709	-2.3484	-0.0012359	-2.6469	-0.001393	526.2768142237301	72.246	0.2529	72.246	72.119	72.372	0					6	4	2	0	0	0	0.56504	1	26279	26279		34.402	12.655	1	545100	+		22853	22067	16591	16708	22421	22421					0.022556708121328484
ISPRRDWK	8	Unmodified	_ISPRRDWK_					0	0	0		ENST00000264409.4_1_4:84465752-84502831:+|nuORF	ENST00000264409.4_1_4:84465752-84502831:+|nuORF	ENST00000264409.4_1_4:84465752-84502831:+|nuORF	MSMS	A375_MHC_IP_R1	1	353.2537536621094	3	353.201564	1056.58286	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.493	1	34.493	33.993	34.993	0								0	0	0	0.16876	1	11374	11374		13.042	0.16986	1				22854	10334	16592	16709	22422	22422					0.056833871485423515
ISPRSSGYTL	10	Unmodified	_ISPRSSGYTL_					0	0	0			REV__nc|ENSG00000100722|Q6PJT7-3|ZC3H14	REV__nc|ENSG00000100722|Q6PJT7-3|ZC3H14	MULTI-SECPEP	A375_MHC_IP_R1	1	540.17431640625	2	540.787838	1079.56112	-0.65499	-0.00035421	-3.6832	-0.0019918	-4.3382	-0.002346	540.7874229664046	79.898	0.61568	79.898	79.47	80.086	0					16	11	2	0	0	0	0.70528	1	29197	29197		32.786	2.1491	1	1010600	+		22855	27145	16593	16710	22423	22423					0.024525376093379236
ISPSERSY	8	Unmodified	_ISPSERSY_					0	0	0		nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.M1658Sfs*11|1|0.32|ENSG00000171587|chr21:40055787-40055787|A/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM;DSCAM|p.R1437C|1|0.29|ENSG00000171587|chr21:40080263-40080263|G/A|missense_variant;DSCAM|p.E1439K|2|0.3|ENSG00000171587|chr21:40080257-40080257|C/T|missense_variant	nc|ENSG00000171587|O60469-2|DSCAM	nc|ENSG00000171587|O60469-2|DSCAM	MULTI-MSMS	A375_MHC_IP_R2	2	470.1320495605469	2	469.732532	937.45051	-0.61379	-0.00028832	-0.45283	-0.00021271	-1.0666	-0.00050102	469.73215525172515	77.512	0.45775	78.255	78.01	78.468	0.74294					17	8	3	0	0	0	0.75322	1	29424	29424		19.439	5.9311	1	1729100			22856	805	16594	16711	22424	22424					-0.02071682378903006
ISPSERSY	8	Unmodified	_ISPSERSY_					0	0	0		nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.M1658Sfs*11|1|0.32|ENSG00000171587|chr21:40055787-40055787|A/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM;DSCAM|p.R1437C|1|0.29|ENSG00000171587|chr21:40080263-40080263|G/A|missense_variant;DSCAM|p.E1439K|2|0.3|ENSG00000171587|chr21:40080257-40080257|C/T|missense_variant	nc|ENSG00000171587|O60469-2|DSCAM	nc|ENSG00000171587|O60469-2|DSCAM	MULTI-MATCH	A375_MHC_IP_R1	1		2	469.732532	937.45051	-0.21607	-0.0001015	-0.48337	-0.00022705	-0.69944	-0.00032855	469.73254716947764	78.298	0.45702	78.298	78.048	78.505	0	0.021622	-2.7101E-05	NaN	19.439	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1091900			22857	805	16594	16711							-0.02071682378903006
ISPSFRPNI	9	Unmodified	_ISPSFRPNI_					0	0	0			REV__ENST00000529847.1_1_11:6501462-6502550:-|nuORF	REV__ENST00000529847.1_1_11:6501462-6502550:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	515.7095336914062	2	515.787641	1029.56073	-0.77226	-0.00039832	-0.010457	-5.3936E-06	-0.78272	-0.00040371	515.7875700715418	70.657	1.4172	71.391	71.048	72.465	0.73421					48	27	5	0	0	0	0.58047	1	26995	26995		15.847	3.6065	1	42454000	+		22858	25830	16595	16712	22425	22425					0.04713162680127425
ISPWTGRF	8	Unmodified	_ISPWTGRF_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENST00000531001.1_1_11:125478078-125479612:+|nuORF	ENSG00000134910|ENST00000392708|STT3A	ENSG00000134910|ENST00000392708|STT3A	MULTI-MSMS	A375_MHC_IP_R1	1	482.7026062011719	2	482.255977	962.497401	-0.40092	-0.00019334	-0.4474	-0.00021576	-0.84832	-0.00040911	482.2556201125374	59.065	0.40781	59.065	58.786	59.194	0					11	7	2	0	0	0	0.75805	1	21276	21276		18.135	3.5533	1	788260			22859	4626	16596	16713	22426	22426					0.014652219629056162
ISPYMHPTI	9	Unmodified	_ISPYMHPTI_					0	0	0		ZNF750|p.G229R|1|0.26|ENSG00000141579|chr17:82831770-82831770|C/T|missense_variant;ENSG00000141579|ENST00000269394|ZNF750	ZNF750|p.G229R|1|0.26|ENSG00000141579|chr17:82831770-82831770|C/T|missense_variant	ZNF750|p.G229R|1|0.26|ENSG00000141579|chr17:82831770-82831770|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	530.1901245117188	2	529.770603	1057.52665	-0.41315	-0.00021887	0.15854	8.3992E-05	-0.25461	-0.00013488	529.7706234007878	53.799	0.80984	53.799	53.453	54.263	0					38	15	3	0	0	0	0.43185	1	19206	19206		23.148	2.6948	1	3564900			22860	5261	16597	16714	22427	22427					0.00018998196878783347
ISQDIGLWWAT	11	Unmodified	_ISQDIGLWWAT_					0	0	0			REV__ENSG00000087237|ENST00000200676|CETP	REV__ENSG00000087237|ENST00000200676|CETP	MULTI-MSMS	A375_MHC_IP_R2	2	645.7276000976562	2	645.32987	1288.64519	-0.53281	-0.00034384	-2.4687	-0.0015931	-3.0015	-0.001937	645.3284324633546	86.225	0.40978	86.958	86.845	87.255	0.733					12	7	2	0	0	0	0.67565	1	32823	32823		17.443	2.1942	1	1454300	+		22861	16868	16598	16715	22428	22428					0.012410687062356374
ISQEEDKRW	9	Unmodified	_ISQEEDKRW_					0	0	0		ENST00000424004.1_1_1:243788209-243788266:-|nuORF	ENST00000424004.1_1_1:243788209-243788266:-|nuORF	ENST00000424004.1_1_1:243788209-243788266:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	596.1146850585938	2	595.793652	1189.57275	-0.33297	-0.00019838	0.51461	0.0003066	0.18164	0.00010822	595.7939457408934	101.7	0.35226	101.7	101.45	101.8	0					9	6	2	0	0	0	0.65246	1	37339	37339		21.747	14.138	1	1969500			22862	11767	16599	16716	22429	22429					-0.01445265367351567
ISQFMQGY	8	Unmodified	_ISQFMQGY_					0	0	0		ENSG00000034971|ENST00000037502|MYOC	ENSG00000034971|ENST00000037502|MYOC	ENSG00000034971|ENST00000037502|MYOC	MSMS	A375_MHC_IP_R1	1	487.1575012207031	2	487.226028	972.437503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.135	1	48.135	47.635	48.635	0								0	0	0	0.16876	1	16964	16964		11.64	0	1				22863	1130	16600	16717	22430	22430					-0.04981836762647163
ISQHLVSYR	9	Unmodified	_ISQHLVSYR_					0	0	0		ENSG00000047410|ENST00000367478|TPR;nc|ENSG00000047410|P12270-2|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-SECPEP	A375_MHC_IP_R1	1	551.669677734375	2	551.803823	1101.59309	-0.19658	-0.00010847	-0.68728	-0.00037924	-0.88386	-0.00048772	551.8036588456116	45.375	0.35195	45.375	45.132	45.484	0					14	6	3	0	0	0	0.58271	1	15911	15911		14.838	7.549	1	1870600			22864	1199	16601	16718	22431	22431					0.046359500831158584
ISQKIHSLKNK	11	Unmodified	_ISQKIHSLKNK_					0	0	0			REV__MARVELD2|p.R542S|1|0.15|ENSG00000152939|chr5:69441603-69441603|A/C|missense_variant	REV__MARVELD2|p.R542S|1|0.15|ENSG00000152939|chr5:69441603-69441603|A/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	433.28515625	3	432.597983	1294.77212	-0.46397	-0.00020071	-0.65787	-0.00028459	-1.1218	-0.00048531	432.59760490012843	136.64	1.028	136.64	136.46	137.49	0					64	19	4	0	0	0	0.73809	1	52682	52682		0.40827	0	1	34045000	+		22865	26987	16602	16719	22432	22432					0.13652414651210165
ISQKKLKKYEK	11	Unmodified	_ISQKKLKKYEK_					0	0	0		ENSG00000011454|ENST00000373647|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	MSMS	A375_MHC_IP_R1	1	697.0091552734375	2	696.932294	1391.85004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.916	1	50.916	50.416	51.416	0								0	0	0	0.16334	1	18058	18058		1.3295	0	1				22866	1003	16603	16720	22433	22433					0.1697842751659664
ISQLHYAL	8	Unmodified	_ISQLHYAL_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MSMS	A375_MHC_IP_R1	1	472.6765441894531	2	472.763635	943.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.69	1	57.69	57.19	58.19	0								0	0	0	0.16876	1	20706	20706		13.508	1.8676	1				22867	3923	16604	16721	22434	22434					0.03870088760083945
ISQLKDTQF	9	Unmodified	_ISQLKDTQF_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	A375_MHC_IP_R1	1	540.7021484375	2	540.290214	1078.56587	-0.63247	-0.00034172	0.095916	5.1823E-05	-0.53655	-0.00028989	540.2902520228788	63.909	0.96578	63.909	63.58	64.546	0					50	18	4	0	0	0	0.073067	1	23257	23257		55.503	3.8729	1	35517000	+		22868	20029	16605	16722	22435	22435					0.02973421752062677
ISQLLRESY	9	Unmodified	_ISQLLRESY_					0	0	0		ENSG00000138347|ENST00000358913|MYPN	ENSG00000138347|ENST00000358913|MYPN	ENSG00000138347|ENST00000358913|MYPN	MULTI-SECPEP	A375_MHC_IP_R1	1	369.9488525390625	3	370.204751	1107.59242	0.55052	0.00020381	-0.43359	-0.00016052	0.11693	4.3289E-05	370.5391222542242	43.031	0.45682	43.031	42.689	43.146	0					17	8	3	0	0	0	0.73363	1	14826	14826		4.1895	0	1	559090			22869	4981	16606	16723	22436	22436					0.0429311064342528
ISQLMICPAQI	11	Unmodified	_ISQLMICPAQI_					0	0	0			REV__ENST00000509227.1_1_5:78940498-78940588:+|nuORF	REV__ENST00000509227.1_1_5:78940498-78940588:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	406.63720703125	3	406.219127	1215.63555	-0.27327	-0.00011101	1.2067	0.00049017	0.93339	0.00037916	406.55483820129524	24.275	0.15183	24.918	24.806	24.958	0.64368					4	2	2	0	0	0	0.98524	1	7916	7916		3.5927	0	1	892580	+		22870	25593	16607	16724	22437	22437					0.03635841104846804
ISQLTKQRL	9	Unmodified	_ISQLTKQRL_					0	0	0		nc|ENSG00000185920|Q13635-4|PTCH1;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1;ENST00000375290.6_3_9:98215758-98232201:-|nuORF	nc|ENSG00000185920|Q13635-4|PTCH1	nc|ENSG00000185920|Q13635-4|PTCH1	MULTI-SECPEP	A375_MHC_IP_R1	1	544.2347412109375	2	543.835123	1085.65569	-0.52386	-0.00028489	-0.17085	-9.2913E-05	-0.69471	-0.00037781	543.8349551047068	57.174	0.459	57.174	56.905	57.364	0					19	8	3	0	0	0	0.59927	1	20507	20507		24.991	2.2547	1	3657100			22871	8707	16608	16725	22438	22438					0.11629096151318663
ISQLTKQRL	9	Unmodified	_ISQLTKQRL_					0	0	0		nc|ENSG00000185920|Q13635-4|PTCH1;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1;ENST00000375290.6_3_9:98215758-98232201:-|nuORF	nc|ENSG00000185920|Q13635-4|PTCH1	nc|ENSG00000185920|Q13635-4|PTCH1	MULTI-MATCH	A375_MHC_IP_R2	2		2	543.835123	1085.65569	-1.0763	-0.00058531	-0.073462	-3.9951E-05	-1.1497	-0.00062526	543.8350320783891	56.244	0.51022	56.994	56.693	57.203	0.75015	-0.090277	6.4766E-05	NaN	24.991	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3543200			22872	8707	16608	16725							0.11629096151318663
ISQLVTQKF	9	Unmodified	_ISQLVTQKF_					0	0	0		ENSG00000185736|ENST00000381312|ADARB2	ENSG00000185736|ENST00000381312|ADARB2	ENSG00000185736|ENST00000381312|ADARB2	MULTI-SECPEP	A375_MHC_IP_R2	2	532.1998901367188	2	532.310949	1062.60735	-0.90933	-0.00048405	-0.13636	-7.2584E-05	-1.0457	-0.00055663	532.3106725309976	28.129	0.35486	28.808	28.655	29.01	0.67857					13	6	3	0	0	0	0.74412	1	9638	9638		10.074	0	1	2125500			22873	8689	16609	16726	22439	22439					0.07854602511406483
ISQNARELIN	10	Unmodified	_ISQNARELIN_					0	0	0			REV__ENSG00000080007|ENST00000370336|DDX43	REV__ENSG00000080007|ENST00000370336|DDX43	MULTI-SECPEP	A375_MHC_IP_R1	1	578.6979370117188	2	579.317294	1156.62004	-0.56853	-0.00032936	3.0226	0.001751	2.454	0.0014217	579.3182112141927	41.378	0.4574	41.378	41.164	41.622	0					13	8	2	0	0	0	0.7212	1	14289	14289		7.1017	0	1	2754900	+		22874	16741	16610	16727	22440	22440					0.04799013903675586
ISQPQKTIKV	10	Unmodified	_ISQPQKTIKV_					0	0	0		ENSG00000164946|ENST00000380880|FREM1;nc|ENSG00000164946|Q5H8C1-3|FREM1;nc|ENSG00000164946|Q5H8C1-2|FREM1	ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MSMS	A375_MHC_IP_R2	2	381.2890319824219	3	381.236163	1140.68666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.517	1	20.127	19.627	20.627	0.61029								0	0	0	0.15397	1	6004	6004		7.9454	0.46833	1				22875	6897	16611	16728	22441	22441					0.12194249465551366
ISQRAKKRF	9	Unmodified	_ISQRAKKRF_					0	0	0			REV__C3AR1|p.D441N|1|0.3|ENSG00000171860|chr12:8058865-8058865|C/T|missense_variant	REV__C3AR1|p.D441N|1|0.3|ENSG00000171860|chr12:8058865-8058865|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	378.5743408203125	3	378.568247	1132.68291	0.038121	1.4431E-05	0.041605	1.575E-05	0.079726	3.0182E-05	378.5682768396951	23.508	0.71206	23.508	23.33	24.042	0					21	13	2	0	0	0	0.69317	1	6567	6567		7.609	0.50723	1	25458000	+		22876	15541	16612	16729	22442	22442					0.1218762448236248
ISQRFQIMK	9	Unmodified	_ISQRFQIMK_					0	0	0		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	A375_MHC_IP_R2	2	383.9482727050781	3	384.218226	1149.63285	-0.93619	-0.0003597	4.4776	0.0017204	3.5414	0.0013607	384.22033885297594	29.14	0.50578	29.839	29.73	30.236	0.69872					13	9	2	0	0	0	0.75164	1	10120	10120		3.5871	0	1	3850000			22877	2464	16613	16730	22443	22443					0.06401753762202134
ISQRWLTF	8	Unmodified	_ISQRWLTF_					0	0	0			REV__nc|ENSG00000242520|P43359|MAGEA5P	REV__nc|ENSG00000242520|P43359|MAGEA5P	MULTI-SECPEP	A375_MHC_IP_R1	1	526.1439819335938	2	525.790184	1049.56581	-0.50965	-0.00026797	-2.8529	-0.0015	-3.3625	-0.001768	525.7881046394948	46.5	0.55294	46.5	46.043	46.596	0					16	10	2	0	0	0	0.92867	1	16323	16323		24.021	10.513	1	2022600	+		22878	27524	16614	16731	22444	22444					0.043014665427335785
ISQSELTPH	9	Unmodified	_ISQSELTPH_					0	0	0		nc|ENSG00000166783|Q9Y4F3-6|MARF1;ENST00000548216.2_1_16:15729470-15733102:-|nuORF;nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1	nc|ENSG00000166783|Q9Y4F3-6|MARF1	nc|ENSG00000166783|Q9Y4F3-6|MARF1	MULTI-SECPEP	A375_MHC_IP_R1	1	506.99041748046875	2	506.258914	1010.50327	-0.19557	-9.9011E-05	-1.0148	-0.00051375	-1.2104	-0.00061276	506.25849914777194	35.538	0.35653	35.538	35.269	35.625	0					9	6	2	0	0	0	0.71541	1	11750	11750		16.942	6.8684	1	1949300			22879	7110	16615	16732	22445	22445					-0.0015572431610735293
ISQSTLIYEV	10	Unmodified	_ISQSTLIYEV_					0	0	0		ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3	ENSG00000165323|ENST00000525166|FAT3	ENSG00000165323|ENST00000525166|FAT3	MULTI-MSMS	A375_MHC_IP_R2	2	577.876708984375	2	576.810979	1151.6074	0.084834	4.8933E-05	-0.95601	-0.00055144	-0.87118	-0.0005025	576.8105634537183	99.607	0.55932	100.37	100.12	100.68	0.76278					23	10	3	0	0	0	0.39599	1	37769	37769		34.402	3.1334	1	5696500			22880	6942	16616	16733	22446	22446					0.037665577207462775
ISQTKEVTL	9	Unmodified	_ISQTKEVTL_					0	0	0		ENSG00000180043|ENST00000424985|GARIN5B	ENSG00000180043|ENST00000424985|GARIN5B	ENSG00000180043|ENST00000424985|GARIN5B	MULTI-SECPEP	A375_MHC_IP_R2	2	509.2157897949219	2	509.792589	1017.57063	-0.6675	-0.00034029	-1.4296	-0.0007288	-2.0971	-0.0010691	510.29316649613145	64.313	0.56054	65.053	64.699	65.259	0.74023					13	10	2	0	0	0	0.58271	1	24304	24304		20.454	10.38	1	707350			22881	8275	16617	16734	22447	22447					0.06254305894856316
ISQVCMTFVSV	11	Unmodified	_ISQVCMTFVSV_					0	0	0			REV__ENSG00000145685|ENST00000380345|LHFPL2	REV__ENSG00000145685|ENST00000380345|LHFPL2	MULTI-SECPEP	A375_MHC_IP_R2	2	405.2912292480469	3	405.203365	1212.58827	-0.25537	-0.00010348	-0.71947	-0.00029153	-0.97485	-0.00039501	405.2030646629815	19.021	0.29975	19.624	19.483	19.783	0.60308					12	5	3	0	0	0	0.9836	1	5787	5787		6.2344	0.83165	1	3597800	+		22882	19484	16618	16735	22448	22448					-0.009524381661549342
ISREATFF	8	Unmodified	_ISREATFF_					0	0	0			REV__NPC1|p.S602F|1|0.2|ENSG00000141458|chr18:23545102-23545102|G/A|missense_variant	REV__NPC1|p.S602F|1|0.2|ENSG00000141458|chr18:23545102-23545102|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	486.1533203125	2	485.753267	969.491981	-0.25761	-0.00012513	-0.14312	-6.952E-05	-0.40073	-0.00019465	485.75315708795773	59.355	1.3728	59.355	58.481	59.854	0					38	26	2	0	0	0	0.73227	1	21350	21350		37.974	3.8716	1	2415200	+		22883	27624	16619	16736	22449	22449					0.006014983804220719
ISRFDLLYT	9	Unmodified	_ISRFDLLYT_					0	0	0			REV__ENST00000513152.1_1_5:40764586-40764871:-|nuORF	REV__ENST00000513152.1_1_5:40764586-40764871:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	564.7084350585938	2	564.308406	1126.60226	-0.47753	-0.00026947	-0.59006	-0.00033297	-1.0676	-0.00060245	564.3084050588296	70.593	0.6084	71.327	70.895	71.503	0.73421					21	11	3	0	0	0	0.67323	1	26755	26755		19.362	4.5237	1	6096100	+		22884	25636	16620	16737	22450	22450					0.04402298648801661
ISRGPSGRTF	10	Unmodified	_ISRGPSGRTF_					0	0	0			REV__ENSG00000175445|ENST00000650287|LPL	REV__ENSG00000175445|ENST00000650287|LPL	MULTI-SECPEP	A375_MHC_IP_R2	2	539.208251953125	2	539.293622	1076.57269	-1.0419	-0.00056186	-1.4637	-0.00078936	-2.5055	-0.0013512	539.2928549090765	40.79	0.30634	41.565	41.386	41.692	0.77451					7	5	2	0	0	0	0.70528	1	15106	15106		26.268	26.268	1	1311800	+		22885	21344	16621	16738	22451	22451					0.03746779423318003
ISRGWSLW	8	Unmodified	_ISRGWSLW_					0	0	0		chr10:12170768-12170900|120|24.95|0.68|5.21|-|1|None,NUDT5|1	chr10:12170768-12170900|120|24.95|0.68|5.21|-|1|None,NUDT5|1	chr10:12170768-12170900|120|24.95|0.68|5.21|-|1|None,NUDT5|1	MULTI-MSMS	A375_MHC_IP_R1	1	502.6492004394531	2	502.769252	1003.52395	-0.58283	-0.00029303	-2.6305	-0.0013225	-3.2133	-0.0016156	503.2685424581173	86.351	0.96252	86.351	85.717	86.679	0					32	18	3	0	0	0	0.77515	1	31692	31692		12.532	0.89125	1	3947800			22886	397	16622	16739	22452	22452					0.022329108542294307
ISRKEFVRF	9	Unmodified	_ISRKEFVRF_					0	0	0		ENSG00000104756|ENST00000221200|KCTD9	ENSG00000104756|ENST00000221200|KCTD9	ENSG00000104756|ENST00000221200|KCTD9	MULTI-SECPEP	A375_MHC_IP_R1	1	394.9643249511719	3	394.564502	1180.67168	0.21964	8.6664E-05	-0.73174	-0.00028872	-0.5121	-0.00020206	394.56425797697347	35.82	0.40905	35.82	35.573	35.982	0					12	7	2	0	0	0	0.65623	1	11975	11975		9.544	5.3545	1	2411700			22887	2533	16623	16740	22453	22453					0.08856802388208962
ISRKRRIPLP	10	Unmodified	_ISRKRRIPLP_					0	0	0			REV__ENSG00000197461|ENST00000402802|PDGFA	REV__ENSG00000197461|ENST00000402802|PDGFA	MSMS	A375_MHC_IP_R2	2	618.3434448242188	2	618.406581	1234.79861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.803	1	85.539	85.039	86.039	0.73601								0	0	0	0.1552	1	32238	32238		3.9444	0.66309	1		+		22888	22291	16624	16741	22454	22454					0.19060148333232974
ISRKYDYQQP	10	Unmodified	_ISRKYDYQQP_					0	0	0		ENST00000498447.5_1_8:42403781-42407748:+|nuORF;ENSG00000176209|ENST00000417410|SMIM19	ENST00000498447.5_1_8:42403781-42407748:+|nuORF	ENST00000498447.5_1_8:42403781-42407748:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	433.15435791015625	3	433.222693	1296.64625	0.0089717	3.8867E-06	-0.46504	-0.00020147	-0.45607	-0.00019758	433.22257468266514	71.414	3.0422	71.414	70.648	73.69	0					174	59	6	0	0	0	0.70179	1	26712	26712		7.0371	2.3212	1	556900000			22889	8008	16625	16742	22455	22455					0.009792830751393922
ISRLNFLRPFH	11	Unmodified	_ISRLNFLRPFH_					0	0	0			REV__nc|ENSG00000176204|Q86VH4-2|LRRTM4	REV__nc|ENSG00000176204|Q86VH4-2|LRRTM4	MSMS	A375_MHC_IP_R2	2	700.7981567382812	2	700.401496	1398.78844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.934	1	65.672	65.172	66.172	0.73811								0	0	0	0.16307	1	24619	24619		2.7352	1.2533	1		+		22890	21393	16626	16743	22456	22456					0.10499540607975177
ISRLSCMSV	9	Unmodified	_ISRLSCMSV_					0	0	0			REV__ENST00000325888.12_1_7:128485240-128486061:+|nuORF	REV__ENST00000325888.12_1_7:128485240-128486061:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	498.1871032714844	2	498.254262	994.493972	-0.37516	-0.00018692	0.5517	0.00027489	0.17655	8.7965E-05	498.2544861145855	87.87	0.71356	87.87	87.542	88.256	0					38	13	4	0	0	0	0.38603	1	32175	32175		25.399	1.3787	1	9470300	+		22891	23599	16627	16744	22457	22457					-0.0034953219762883236
ISRLWPAPRSQ	11	Unmodified	_ISRLWPAPRSQ_					0	0	0		ENST00000546878.5_2_12:56321258-56321390:+|nuORF	ENST00000546878.5_2_12:56321258-56321390:+|nuORF	ENST00000546878.5_2_12:56321258-56321390:+|nuORF	MSMS	A375_MHC_IP_R2	2	655.7708740234375	2	655.870028	1309.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.71	1	103.48	102.98	103.98	0.76428								0	0	0	0.16213	1	38912	38912		7.609	2.3121	1				22892	13336	16628	16745	22458	22458					0.08302974819935116
ISRNQFMIRQW	11	Unmodified	_ISRNQFMIRQW_					0	0	0			REV__ENST00000361320.4_1_10:68686133-68686247:+|nuORF	REV__ENST00000361320.4_1_10:68686133-68686247:+|nuORF	MSMS	A375_MHC_IP_R2	2	493.6542663574219	3	493.594355	1477.76124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.384	1	34.136	33.636	34.636	0.75225								0	0	0	0.1624	1	11956	11956		2.8433	0.75932	1		+		22893	23908	16629	16746	22459	22459					0.041466890052788585
ISRPIVNLF	9	Unmodified	_ISRPIVNLF_					0	0	0		ENSG00000154122|ENST00000284268|ANKH;ENST00000503939.5_1_5:14741448-14751330:-|nuORF;nc|ENSG00000154122|Q9HCJ1-2|ANKH	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MULTI-MSMS	A375_MHC_IP_R2	2	530.22119140625	2	529.821484	1057.62842	-0.50004	-0.00026493	-0.29572	-0.00015668	-0.79576	-0.00042161	529.8212508362128	91.675	1.1144	92.409	92.021	93.135	0.73451					54	21	4	0	0	0	0.027818	1	34822	34822		76.825	34.985	1	33828000			22894	6058	16630	16747	22460	22460					0.10190612610927019
ISRPKLLKRN	10	Unmodified	_ISRPKLLKRN_					0	0	0			REV__ENSG00000106479|ENST00000223210|ZNF862	REV__ENSG00000106479|ENST00000223210|ZNF862	MSMS	A375_MHC_IP_R2	2	612.98681640625	2	612.898589	1223.78262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.14	1	122.51	122.01	123.01	0.3766								0	0	0	0.15372	1	46772	46772		8.7454	3.0136	1		+		22895	17452	16631	16748	22461	22461					0.1796844209632127
ISRPLPEVGKY	11	Unmodified	_ISRPLPEVGKY_					0	0	0		ENSG00000121578|ENST00000393765|B4GALT4	ENSG00000121578|ENST00000393765|B4GALT4	ENSG00000121578|ENST00000393765|B4GALT4	MULTI-MSMS	A375_MHC_IP_R2	2	631.0906372070312	2	629.861338	1257.70812	-0.83892	-0.0005284	0.51932	0.0003271	-0.3196	-0.00020131	629.8619604201859	82.524	1.7724	83.267	82.279	84.052	0.74294					82	34	4	0	0	0	0.73078	1	31369	31369		8.1555	0	1	4754900			22896	3725	16632	16749	22462	22462					0.08957634494277045
ISRQPLSDW	9	Unmodified	_ISRQPLSDW_					0	0	0		ENST00000382292.7_2_13:23985585-23985648:-|nuORF	ENST00000382292.7_2_13:23985585-23985648:-|nuORF	ENST00000382292.7_2_13:23985585-23985648:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	551.7247314453125	2	551.288005	1100.56146	-0.50912	-0.00028067	0.4418	0.00024356	-0.067329	-3.7117E-05	551.2882806869181	54.718	0.45876	54.718	54.516	54.975	0					14	8	2	0	0	0	0.38603	1	19567	19567		25.399	4.9457	1	2305300			22897	11385	16633	16750	22463	22463					0.015199573291738488
ISRQPLSDW	9	Unmodified	_ISRQPLSDW_					0	0	0		ENST00000382292.7_2_13:23985585-23985648:-|nuORF	ENST00000382292.7_2_13:23985585-23985648:-|nuORF	ENST00000382292.7_2_13:23985585-23985648:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	551.288005	1100.56146	-1.245	-0.00068638	0.67192	0.00037042	-0.57312	-0.00031595	551.2882760822442	53.692	0.46318	54.443	54.249	54.712	0.75105	-0.13751	0.00016644	NaN	25.399	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2911300			22898	11385	16633	16750							0.015199573291738488
ISRQRSEPV	9	Unmodified	_ISRQRSEPV_					0	0	0			REV__PLXDC1|p.R274Q|1|0.35|ENSG00000161381|chr17:39087693-39087693|C/T|missense_variant	REV__PLXDC1|p.R274Q|1|0.35|ENSG00000161381|chr17:39087693-39087693|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	358.27642822265625	3	357.868362	1070.58326	-0.65352	-0.00023387	3.9712	0.0014212	3.3177	0.0011873	357.87000366178097	25.491	0.25227	26.135	25.976	26.229	0.64368					6	4	2	0	0	0	0.71541	1	8544	8544		11.495	4.7715	1	777250	+		22899	27808	16634	16751	22464	22464					0.050787620777555276
ISRRDALEV	9	Unmodified	_ISRRDALEV_					0	0	0		nc|ENSG00000162391|Q8WW52-2|FAM151A;ENSG00000162391|ENST00000302250|FAM151A	nc|ENSG00000162391|Q8WW52-2|FAM151A	nc|ENSG00000162391|Q8WW52-2|FAM151A	MULTI-SECPEP	A375_MHC_IP_R2	2	529.6927490234375	2	529.80128	1057.58801	-0.88726	-0.00047007	-0.17334	-9.1835E-05	-1.0606	-0.00056191	529.8011138150533	36.461	0.40552	37.232	37.056	37.461	0.7709					16	7	3	0	0	0	0.73363	1	13233	13233		10.824	0	1	10860000			22900	6525	16635	16752	22465	22465					0.06151646220496332
ISRRDFRW	8	Unmodified	_ISRRDFRW_					0	0	0		ENST00000281146.9_1_4:130015073-130023805:+|nuORF	ENST00000281146.9_1_4:130015073-130023805:+|nuORF	ENST00000281146.9_1_4:130015073-130023805:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	378.9580078125	3	379.20883	1134.60466	-0.32964	-0.000125	-0.75244	-0.00028533	-1.0821	-0.00041034	379.20845264870127	24.875	0.50724	25.518	25.314	25.822	0.64368					12	9	2	0	0	0	0.972	1	8350	8350		6.2058	0	1	2536400			22901	10424	16636	16753	22466	22466					0.042741918971159976
ISRRLALL	8	Unmodified	_ISRRLALL_					0	0	0		ENST00000602875.5_1_5:139930287-139937028:-|nuORF;ENSG00000213523|ENST00000336283|SRA1	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	471.716064453125	2	471.316369	940.618185	-0.57508	-0.00027105	0.35275	0.00016625	-0.22234	-0.00010479	471.31651959710723	66.249	0.45531	66.249	66.022	66.478	0					12	8	2	0	0	0	0.7754	1	24018	24018		11.64	3.047	1	1875000			22902	9569	16637	16754	22467	22467					0.14550049676358867
ISRRRRRWWT	10	Unmodified	_ISRRRRRWWT_					0	0	0			REV__ENSG00000154736|ENST00000284987|ADAMTS5	REV__ENSG00000154736|ENST00000284987|ADAMTS5	MSMS	A375_MHC_IP_R1	1	736.9296875	2	736.926535	1471.83852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.063	1	84.063	83.563	84.563	0								0	0	0	0.15591	1	30780	30780		1.6526	0.32309	1		+		22903	19893	16638	16755	22468	22468					0.121470880564857
ISRRSLLRFLY	11	Unmodified	_ISRRSLLRFLY_					0	0	0		nc|ENSG00000197381|P78563-5|ADARB1;nc|ENSG00000197381|P78563-6|ADARB1;ENSG00000197381|ENST00000348831|ADARB1;nc|ENSG00000197381|P78563-3|ADARB1;nc|ENSG00000197381|P78563-4|ADARB1;nc|ENSG00000197381|P78563|ADARB1	nc|ENSG00000197381|P78563-5|ADARB1	nc|ENSG00000197381|P78563-5|ADARB1	MSMS	A375_MHC_IP_R2	2	712.3489990234375	2	712.430253	1422.84595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.08	1	107.84	107.34	108.34	0.75436								0	0	0	0.16302	1	40461	40461		2.9952	0.26005	1				22904	14844	16639	16756	22469	22469					0.15144382813582524
ISRSHCWVY	9	Unmodified	_ISRSHCWVY_					0	0	0		SRRD|p.P172S|1|0.42|ENSG00000100104|chr22:26488393-26488393|C/T|missense_variant	SRRD|p.P172S|1|0.42|ENSG00000100104|chr22:26488393-26488393|C/T|missense_variant	SRRD|p.P172S|1|0.42|ENSG00000100104|chr22:26488393-26488393|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	575.2186889648438	2	575.776751	1149.53895	-0.65472	-0.00037697	-3.979	-0.002291	-4.6337	-0.002668	575.7731405304734	53.78	0.3077	54.531	54.249	54.557	0.75105					8	5	2	0	0	0	0.71541	1	20229	20229		16.942	12.613	1	784150			22905	29247	16640	16757	22470	22470					-0.029839653400813404
ISRSWSRLK	9	Unmodified	_ISRSWSRLK_					0	0	0			REV__FMNL3|p.F788Lfs*19|1|0.06|ENSG00000161791|chr12:49649280-49649281|-/TTCTGCTTTT|frameshift_variant	REV__FMNL3|p.F788Lfs*19|1|0.06|ENSG00000161791|chr12:49649280-49649281|-/TTCTGCTTTT|frameshift_variant	MSMS	A375_MHC_IP_R1	1	378.25634765625	3	378.224368	1131.65128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.848	1	23.848	23.348	24.348	0								0	0	0	0.13226	1	6633	6633		32.037	2.6003	1		+		22906	20218	16641	16758	22471	22471					0.0907163172842047
ISRTSKTIYQ	10	Unmodified	_ISRTSKTIYQ_					0	0	0		nc|ENSG00000135870|Q5TC82-2|RC3H1;ENSG00000135870|ENST00000367696|RC3H1	nc|ENSG00000135870|Q5TC82-2|RC3H1	nc|ENSG00000135870|Q5TC82-2|RC3H1	MULTI-MSMS	A375_MHC_IP_R1	1	399.9590148925781	3	399.559305	1195.65609	-0.30469	-0.00012174	-0.30161	-0.00012051	-0.6063	-0.00024225	399.55912462306077	25.434	0.66191	25.434	25.255	25.917	0					27	12	3	0	0	0	0.70442	1	7426	7426		10.315	4.7919	1	13081000			22907	14618	16642	16759	22472	22472					0.0660847108051712
ISRVVSLLPV	10	Unmodified	_ISRVVSLLPV_					0	0	0			REV__MRPL11|p.S138L|1|0.43|ENSG00000174547|chr11:66437164-66437164|G/A|missense_variant	REV__MRPL11|p.S138L|1|0.43|ENSG00000174547|chr11:66437164-66437164|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	541.8863525390625	2	541.850242	1081.68593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.243	1	94.243	93.743	94.743	0								0	0	0	0.15451	1	34640	34640		6.2058	0.9089	1		+		22908	27038	16643	16760	22473	22473					0.14835454816511628
ISRWPLPEY	9	Unmodified	_ISRWPLPEY_					0	0	0		ENSG00000119402|ENST00000608872|FBXW2;nc|ENSG00000119402|Q9UKT8-2|FBXW2	ENSG00000119402|ENST00000608872|FBXW2	ENSG00000119402|ENST00000608872|FBXW2	MULTI-SECPEP	A375_MHC_IP_R1	1	581.1717529296875	2	580.808574	1159.60259	-0.41746	-0.00024246	-3.958	-0.0022988	-4.3754	-0.0025413	580.8059559956587	85.845	0.20374	85.845	85.717	85.921	0					5	3	2	0	0	0	0.7911	1	31432	31432		7.2892	3.6927	1	588100			22909	3590	16644	16761	22474	22474					0.02917718368644273
ISSESENTYY	10	Unmodified	_ISSESENTYY_					0	0	0		GEM|p.G72E|1|0.37|ENSG00000164949|chr8:94260289-94260289|C/T|missense_variant	GEM|p.G72E|1|0.37|ENSG00000164949|chr8:94260289-94260289|C/T|missense_variant	GEM|p.G72E|1|0.37|ENSG00000164949|chr8:94260289-94260289|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	596.6511840820312	2	596.753858	1191.49316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.812	1	40.812	40.312	41.312	0								0	0	0	0.15451	1	14052	14052		6.2058	1.8765	1				22910	14043	16645	16762	22475	22475					-0.09492376831963156
ISSFIFHS	8	Unmodified	_ISSFIFHS_					0	0	0			REV__ENSG00000143740|ENST00000617596|SNAP47	REV__ENSG00000143740|ENST00000617596|SNAP47	MULTI-SECPEP	A375_MHC_IP_R2	2	469.1264953613281	2	469.242535	936.470518	-0.50046	-0.00023484	0.29097	0.00013654	-0.20949	-9.8301E-05	469.2426514190589	68.425	0.55687	69.16	68.918	69.474	0.73512					12	10	2	0	0	0	0.69059	1	25931	25931		30.225	0	1	1109400	+		22911	19382	16646	16763	22476	22476					-0.00025886648290907033
ISSFLVTNAQ	10	Unmodified	_ISSFLVTNAQ_					0	0	0		ENSG00000198874|ENST00000359626|TYW1;nc|ENSG00000277149|Q6NUM6-2|TYW1B;ENSG00000277149|ENST00000620995|TYW1B	ENSG00000198874|ENST00000359626|TYW1	ENSG00000198874|ENST00000359626|TYW1	MULTI-SECPEP	A375_MHC_IP_R1	1	540.2289428710938	2	540.290214	1078.56587	-0.51268	-0.00027699	-0.23152	-0.00012509	-0.7442	-0.00040208	540.2899021538659	50.046	0.51196	50.046	49.743	50.254	0					13	9	2	0	0	0	0.90513	1	17603	17603		12.241	5.5175	1	1262300			22912	9356	16647	16764	22477	22477					0.029734217520854145
ISSFLVTNAQ	10	Unmodified	_ISSFLVTNAQ_					0	0	0		ENSG00000198874|ENST00000359626|TYW1;nc|ENSG00000277149|Q6NUM6-2|TYW1B;ENSG00000277149|ENST00000620995|TYW1B	ENSG00000198874|ENST00000359626|TYW1	ENSG00000198874|ENST00000359626|TYW1	MULTI-MATCH	A375_MHC_IP_R2	2		2	540.290214	1078.56587	-1.0825	-0.00058486	-1.3616	-0.00073565	-2.4441	-0.0013205	540.2890991581347	49.263	0.5058	50.021	49.741	50.247	0.75737	-0.012648	-0.0006803	NaN	12.241	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1485200			22913	9356	16647	16764							0.029734217520854145
ISSFPQLKRHK	11	Unmodified	_ISSFPQLKRHK_					0	0	0		ENSG00000109762|ENST00000652585|SNX25;nc|ENSG00000109762|Q9H3E2|SNX25	ENSG00000109762|ENST00000652585|SNX25	ENSG00000109762|ENST00000652585|SNX25	MSMS	A375_MHC_IP_R2	2	670.9881591796875	2	670.893503	1339.77245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.12	1	102.89	102.39	103.39	0.76428								0	0	0	0.16249	1	38701	38701		5.7319	0.43497	1				22914	2890	16648	16765	22478	22478					0.11615834371059464
ISSGVVSIW	9	Unmodified	_ISSGVVSIW_					0	0	0		ENSG00000117222|ENST00000264515|RBBP5;nc|ENSG00000117222|Q15291-2|RBBP5	ENSG00000117222|ENST00000264515|RBBP5	ENSG00000117222|ENST00000264515|RBBP5	MULTI-MSMS	A375_MHC_IP_R1	1	474.6905822753906	2	474.263468	946.512382	-0.31694	-0.00015031	0.79961	0.00037922	0.48267	0.00022891	474.2637744355112	110.25	0.50755	110.25	110.09	110.59	0					15	9	2	0	0	0	0.2264	2	40430	40430;40467		36.044	5.8194	1	1134100			22915	3464	16649	16766	22479;22480	22479					0.03698669040238656
ISSGVVSIW	9	Unmodified	_ISSGVVSIW_					0	0	0		ENSG00000117222|ENST00000264515|RBBP5;nc|ENSG00000117222|Q15291-2|RBBP5	ENSG00000117222|ENST00000264515|RBBP5	ENSG00000117222|ENST00000264515|RBBP5	MULTI-MATCH	A375_MHC_IP_R2	2		2	474.263468	946.512382	-0.44909	-0.00021299	-0.33931	-0.00016092	-0.7884	-0.00037391	474.26328010850693	109.51	0.60689	110.26	109.93	110.54	0.74684	0.0055209	-0.00065965	NaN	36.044	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1139300			22916	3464	16649	16766							0.03698669040238656
ISSHTMKKLI	10	Unmodified	_ISSHTMKKLI_					0	0	0		nc|ENSG00000168803|Q6DHV7-2|ADAL;nc|ENSG00000168803|Q6DHV7-3|ADAL;ENSG00000168803|ENST00000562188|ADAL	nc|ENSG00000168803|Q6DHV7-2|ADAL	nc|ENSG00000168803|Q6DHV7-2|ADAL	MULTI-SECPEP	A375_MHC_IP_R1	1	387.119384765625	3	386.561881	1156.66381	0.070535	2.7266E-05	4.3573	0.0016844	4.4278	0.0017116	386.56332298225504	24.372	0.45589	24.372	24.042	24.498	0					9	8	2	0	0	0	0.9269	1	6839	6839		1.7423	0.14999	1	2443100			22917	7345	16650	16767	22481	22481					0.09174907076430827
ISSIGSLTDNS	11	Unmodified	_ISSIGSLTDNS_					0	0	0			REV__ENSG00000148343|ENST00000684074|MIGA2;REV__nc|ENSG00000148343|Q7L4E1-2|MIGA2	REV__ENSG00000148343|ENST00000684074|MIGA2	MSMS	A375_MHC_IP_R1	1	547.2290649414062	2	547.272218	1092.52988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.942	1	38.942	38.442	39.442	0								0	0	0	0.14085	1	13260	13260		26.268	2.2476	1		+		22918	19623;27282	16651	16768	22482	22482					-0.012680802154363846
ISSISPICTN	10	Unmodified	_ISSISPICTN_					0	0	0			REV__nc|ENSG00000162631|Q9Y2I2-2|NTNG1	REV__nc|ENSG00000162631|Q9Y2I2-2|NTNG1	MULTI-MSMS	A375_MHC_IP_R2	2	517.7208862304688	2	517.762975	1033.5114	-0.46812	-0.00024237	0.44245	0.00022908	-0.025664	-1.3288E-05	517.7632192681326	95.01	0.40648	95.76	95.583	95.99	0.75045					14	7	2	0	0	0	0.48529	1	36176	36176		29.082	5.061	1	1720000	+		22919	20281	16652	16769	22483	22483					-0.004019133909878292
ISSLGVSYMML	11	Unmodified	_ISSLGVSYMML_					0	0	0		ENST00000477063.5_1_3:122928052-122962678:+|nuORF;ENSG00000121542|ENST00000492595|SEC22A	ENST00000477063.5_1_3:122928052-122962678:+|nuORF	ENST00000477063.5_1_3:122928052-122962678:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	401.1528625488281	3	400.871616	1199.59302	-0.22007	-8.8218E-05	0.51494	0.00020642	0.29487	0.00011821	400.87162295889914	54.628	0.50832	55.379	55.118	55.626	0.75075					20	9	3	0	0	0	0.66658	1	20554	20554		10.315	1.8709	1	2093000			22920	3723	16653	16770	22484	22484					0.0012044597660860745
ISSLIVKKEW	10	Unmodified	_ISSLIVKKEW_					0	0	0		ENST00000374391.6_1_10:45907703-45907748:+|nuORF	ENST00000374391.6_1_10:45907703-45907748:+|nuORF	ENST00000374391.6_1_10:45907703-45907748:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	401.59698486328125	3	401.576296	1201.70706	-0.33038	-0.00013267	2.2507	0.00090381	1.9203	0.00077114	401.57752261698363	20.036	0.40313	20.647	20.298	20.701	0.61029					11	7	2	0	0	0	0.71946	1	6141	6141		3.5871	0.26742	1	839230			22921	11253	16654	16771	22485	22485					0.11427420125369281
ISSLVTDNI	9	Unmodified	_ISSLVTDNI_					0	0	0		ENST00000502864.5_1_5:36608606-36630112:+|nuORF	ENST00000502864.5_1_5:36608606-36630112:+|nuORF	ENST00000502864.5_1_5:36608606-36630112:+|nuORF	MSMS	A375_MHC_IP_R1	1	481.1732482910156	2	481.263665	960.512776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.02	1	106.02	105.52	106.52	0								0	0	0	0.15069	1	38922	38922		20.454	2.3186	1				22922	12797	16655	16772	22486	22486					0.03094043969406357
ISSNDWSSI	9	Unmodified	_ISSNDWSSI_					0	0	0			REV__ENSG00000181378|ENST00000341552|CFAP65	REV__ENSG00000181378|ENST00000341552|CFAP65	MSMS	A375_MHC_IP_R1	1	504.70989990234375	2	504.735271	1007.45599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.14	1	108.14	107.64	108.64	0								0	0	0	0.15069	1	39674	39674		20.454	3.5113	1		+		22923	21646	16656	16773	22487	22487					-0.047440035870977226
ISSNMKYIK	9	Unmodified	_ISSNMKYIK_					0	0	0			REV__HS3ST5|p.R168K|1|0.24|ENSG00000249853|chr6:114057795-114057795|C/T|missense_variant	REV__HS3ST5|p.R168K|1|0.24|ENSG00000249853|chr6:114057795-114057795|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	542.4677734375	2	542.296985	1082.57942	-0.21538	-0.0001168	1.0059	0.00054549	0.7905	0.00042869	542.2977071588447	22.571	0.91169	22.571	21.962	22.873	0					22	17	2	0	0	0	0.76827	1	6055	6055		6.7232	1.4925	1	1249100	+		22924	26760	16657	16774	22488	22488					0.04142956259670427
ISSPRNVL	8	Unmodified	_ISSPRNVL_					0	0	0		ENSG00000183696|ENST00000395564|UPP1;ENST00000495446.1_1_7:48146453-48147951:+|nuORF;ENST00000395560.7_1_7:48134363-48147951:+|nuORF	ENSG00000183696|ENST00000395564|UPP1	ENSG00000183696|ENST00000395564|UPP1	MULTI-SECPEP	A375_MHC_IP_R1	1	443.6224060058594	2	443.261259	884.507966	-0.10768	-4.7732E-05	-0.18888	-8.3724E-05	-0.29657	-0.00013146	443.2611398675071	58.086	0.50611	58.086	57.822	58.328	0					13	9	2	0	0	0	0.972	1	20924	20924		1.8442	1.2427	1	1201700			22925	8521	16658	16775	22489	22489					0.0610920461731439
ISSPRVSPF	9	Unmodified	_ISSPRVSPF_					0	0	0		ENST00000437800.6_1_12:6925109-6928492:+|nuORF	ENST00000437800.6_1_12:6925109-6928492:+|nuORF	ENST00000437800.6_1_12:6925109-6928492:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	495.64599609375	2	495.274367	988.53418	-0.33634	-0.00016658	-0.016646	-8.2444E-06	-0.35299	-0.00017483	495.27439667677186	61.836	2.2522	61.836	61.432	63.684	0					90	43	5	0	0	0	0.39388	1	22492	22492		32.305	0	1	56546000			22926	11944	16659	16776	22490	22490					0.03945473788803611
ISSPSLSAR	9	Unmodified	_ISSPSLSAR_					0	0	0		ENST00000448927.1_1_21:45751689-45751905:+|nuORF	ENST00000448927.1_1_21:45751689-45751905:+|nuORF	ENST00000448927.1_1_21:45751689-45751905:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	459.6695556640625	2	459.256174	916.497795	0.20313	9.3287E-05	-0.015899	-7.3018E-06	0.18723	8.5985E-05	459.2559754579089	48.755	0.30442	48.755	48.526	48.831	0					8	5	2	0	0	0	0.38603	1	17173	17173		25.399	6.1423	1	1239300			22927	12055	16660	16777	22491	22491					0.03620596892096728
ISSPSLSAR	9	Unmodified	_ISSPSLSAR_					0	0	0		ENST00000448927.1_1_21:45751689-45751905:+|nuORF	ENST00000448927.1_1_21:45751689-45751905:+|nuORF	ENST00000448927.1_1_21:45751689-45751905:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	459.256174	916.497795	-0.26358	-0.00012105	-0.46825	-0.00021505	-0.73183	-0.0003361	459.2559197058639	47.997	0.25131	48.758	48.532	48.783	0.76128	0.0014204	-0.00016603	NaN	25.399	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1306400			22928	12055	16660	16777							0.03620596892096728
ISSQLDTIL	9	Unmodified	_ISSQLDTIL_					0	0	0			REV__nc|ENSG00000137497|Q14980-4|NUMA1	REV__nc|ENSG00000137497|Q14980-4|NUMA1	MULTI-SECPEP	A375_MHC_IP_R1	1	494.6715393066406	2	495.279315	988.544076	-0.2042	-0.00010114	-1.6593	-0.00082184	-1.8635	-0.00092298	495.2775099070417	92.153	0.55855	92.153	92.007	92.566	0					17	10	2	0	0	0	0.4261	1	33944	33944		37.974	10.345	1	826230	+		22929	19013	16661	16778	22492	22492					0.04934617003527819
ISSQLDTIL	9	Unmodified	_ISSQLDTIL_					0	0	0			REV__nc|ENSG00000137497|Q14980-4|NUMA1	REV__nc|ENSG00000137497|Q14980-4|NUMA1	MULTI-MATCH	A375_MHC_IP_R2	2		2	495.279315	988.544076	-0.37951	-0.00018797	-0.063552	-3.1476E-05	-0.44306	-0.00021944	495.2791101063907	91.311	0.45757	92.046	91.919	92.376	0.7345	-0.053619	0.00028414	NaN	46.021	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1464400	+		22930	19013	16661	16778							0.04934617003527819
ISSRFIRPS	9	Unmodified	_ISSRFIRPS_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-MSMS	A375_MHC_IP_R1	1	354.9223937988281	3	354.873336	1061.59818	0.071115	2.5237E-05	0.30084	0.00010676	0.37196	0.000132	354.8735404582505	51.268	0.86311	51.268	50.864	51.728	0					28	16	3	0	0	0	0.6656	1	18280	18280		6.6304	2.1015	1	4596300			22931	6391	16662	16779	22493	22493					0.06984253945756791
ISSRGTILA	9	Unmodified	_ISSRGTILA_					0	0	0			REV__nc|ENSG00000136891|Q9NXF1-2|TEX10	REV__nc|ENSG00000136891|Q9NXF1-2|TEX10	MULTI-SECPEP	A375_MHC_IP_R2	2	459.10577392578125	2	459.274367	916.53418	-0.41885	-0.00019237	-0.075079	-3.4482E-05	-0.49393	-0.00022685	459.2743800468325	39.876	0.25378	40.651	40.473	40.727	0.77451					7	4	2	0	0	0	0.76827	1	14698	14698		3.5965	0	1	1927200	+		22932	18972	16663	16780	22494	22494					0.07257473788808966
ISSRKSFL	8	Unmodified	_ISSRKSFL_					0	0	0			REV__tr|U7SU72|U7SU72_FUSNUCelldivisionproteinFtsI(Penicillin-bindingprotein3)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01125PE=4SV=1	REV__tr|U7SU72|U7SU72_FUSNUCelldivisionproteinFtsI(Penicillin-bindingprotein3)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01125PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	469.6766052246094	2	469.276909	936.539266	-0.28588	-0.00013416	-0.76819	-0.0003605	-1.0541	-0.00049465	469.27689517171166	102.52	0.70692	102.52	102.2	102.91	0					17	13	2	0	0	0	0.7758	1	37650	37650		10.183	0.83596	1	3587500	+		22933	28537	16664	16781	22495	22495					0.06845777651415119
ISSSSFKLF	9	Unmodified	_ISSSSFKLF_					0	0	0		ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-7|GPS1;nc|ENSG00000169727|Q13098-6|GPS1	ENSG00000169727|ENST00000578552|GPS1	ENSG00000169727|ENST00000578552|GPS1	MULTI-SECPEP	A375_MHC_IP_R2	2	508.6755065917969	2	508.276575	1014.5386	-0.56815	-0.00028878	-0.49672	-0.00025247	-1.0649	-0.00054125	508.2764600378951	85.768	1.1724	86.504	86.034	87.206	0.73602					45	22	4	0	0	0	0.3213	1	32597	32597		30.637	0	1	7338000			22934	7432	16665	16782	22496	22496					0.03190938211719185
ISSTGLPFLPV	11	Unmodified	_ISSTGLPFLPV_					0	0	0			REV__ENST00000484927.5_1_3:108549526-108565993:+|nuORF	REV__ENST00000484927.5_1_3:108549526-108565993:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	378.2767028808594	3	377.55338	1129.63831	0.36231	0.00013679	0.25736	9.7169E-05	0.61968	0.00023396	377.5534802653152	25.127	0.45506	25.127	24.953	25.408	0					21	8	3	0	0	0	0.73149	1	7218	7218		7.4771	1.6936	1	13674000	+		22935	25306	16666	16783	22497	22497					0.07867755825645872
ISSTVQRQL	9	Unmodified	_ISSTVQRQL_					0	0	0		ENSG00000129667|ENST00000675367|RHBDF2;nc|ENSG00000129667|Q6PJF5|RHBDF2;ENST00000590168.5_1_17:74469085-74473795:-|nuORF;ENST00000587640.1_1_17:74472910-74477606:-|nuORF;ENST00000589582.5_1_17:74470614-74477615:-|nuORF	ENSG00000129667|ENST00000675367|RHBDF2	ENSG00000129667|ENST00000675367|RHBDF2	MULTI-SECPEP	A375_MHC_IP_R1	1	516.695556640625	2	516.29583	1030.57711	-0.53594	-0.0002767	-0.15424	-7.9636E-05	-0.69018	-0.00035634	516.2957286141392	28.77	0.35326	28.77	28.592	28.945	0					10	6	2	0	0	0	0.13208	1	8930	8930		57.722	24.936	1	4064900			22936	4205	16667	16784	22498	22498					0.06304243846238933
ISSTVQRQL	9	Unmodified	_ISSTVQRQL_					0	0	0		ENSG00000129667|ENST00000675367|RHBDF2;nc|ENSG00000129667|Q6PJF5|RHBDF2;ENST00000590168.5_1_17:74469085-74473795:-|nuORF;ENST00000587640.1_1_17:74472910-74477606:-|nuORF;ENST00000589582.5_1_17:74470614-74477615:-|nuORF	ENSG00000129667|ENST00000675367|RHBDF2	ENSG00000129667|ENST00000675367|RHBDF2	MULTI-MSMS	A375_MHC_IP_R2	2	516.6952514648438	2	516.29583	1030.57711	-0.91779	-0.00047385	0.026188	1.3521E-05	-0.8916	-0.00046033	516.2956654983077	28.053	0.35572	28.731	28.553	28.909	0.67857					9	6	2	0	0	0	0.02114	1	9683	9683		82.529	28.697	1	4001500			22937	4205	16667	16784	22499	22499					0.06304243846238933
ISSTYFIEL	9	Unmodified	_ISSTYFIEL_					0	0	0			REV__ENSG00000172289|ENST00000307552|OR10V1	REV__ENSG00000172289|ENST00000307552|OR10V1	MULTI-SECPEP	A375_MHC_IP_R2	2	536.711181640625	2	536.78169	1071.54883	-1.179	-0.00063288	1.1599	0.00062262	-0.019115	-1.0261E-05	536.7823095185487	23.424	0.50541	24.054	23.828	24.333	0.63014					14	9	2	0	0	0	0.69381	1	7497	7497		21.747	21.747	1	2691800	+		22938	21133	16668	16785	22500	22500					0.015915011462766415
ISSVFQRLL	9	Unmodified	_ISSVFQRLL_					0	0	0		PCDH18|p.M1008I|1|0.13|ENSG00000189184|chr4:137521413-137521413|C/T|missense_variant	PCDH18|p.M1008I|1|0.13|ENSG00000189184|chr4:137521413-137521413|C/T|missense_variant	PCDH18|p.M1008I|1|0.13|ENSG00000189184|chr4:137521413-137521413|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	355.2815856933594	3	354.88172	1061.62333	0.029631	1.0516E-05	0.1174	4.1662E-05	0.14703	5.2177E-05	354.88171665000635	70.719	0.56296	70.719	70.442	71.005	0					24	10	3	0	0	0	0.69674	1	25698	25698		4.5289	0	1	2115100			22939	15118	16669	16786	22501	22501					0.09498308748334239
ISSVFQRLL	9	Unmodified	_ISSVFQRLL_					0	0	0		PCDH18|p.M1008I|1|0.13|ENSG00000189184|chr4:137521413-137521413|C/T|missense_variant	PCDH18|p.M1008I|1|0.13|ENSG00000189184|chr4:137521413-137521413|C/T|missense_variant	PCDH18|p.M1008I|1|0.13|ENSG00000189184|chr4:137521413-137521413|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	354.88172	1061.62333	-0.13625	-4.8352E-05	-0.12233	-4.3412E-05	-0.25858	-9.1764E-05	354.88163763248957	69.715	0.71172	70.45	69.981	70.693	0.73421	-0.13475	-9.7486E-05	NaN	4.5289	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2216000			22940	15118	16669	16786							0.09498308748334239
ISSVVYGLPV	10	Unmodified	_ISSVVYGLPV_					0	0	0			REV__ENSG00000167895|ENST00000318430|TMC8	REV__ENSG00000167895|ENST00000318430|TMC8	MULTI-SECPEP	A375_MHC_IP_R1	1	517.6842651367188	2	517.30005	1032.58555	-0.62219	-0.00032186	0.24508	0.00012678	-0.37711	-0.00019508	517.8021210770127	80.213	0.30517	80.213	80.034	80.34	0					8	5	2	0	0	0	0.48072	1	29229	29229		37.974	0	1	1183900	+		22941	20803	16670	16787	22502	22502					0.07055797762859584
ISTAITQFFL	10	Unmodified	_ISTAITQFFL_					0	0	0			REV__ENSG00000135749|ENST00000258229|PCNX2	REV__ENSG00000135749|ENST00000258229|PCNX2	MULTI-SECPEP	A375_MHC_IP_R2	2	380.11346435546875	3	380.881497	1139.62266	-0.32112	-0.00012231	0.33503	0.00012761	0.013908	5.2972E-06	380.88175321685026	56.355	0.30588	57.105	56.898	57.203	0.75015					8	5	2	0	0	0	0.93961	1	21331	21331		1.5923	0.39894	1	1237300	+		22942	18881	16671	16788	22503	22503					0.058434693086155676
ISTCHCHC	8	Unmodified	_ISTCHCHC_					0	0	0		nc|ENSG00000140839|Q6UXF7-2|CLEC18B;ENSG00000140839|ENST00000682950|CLEC18B;nc|ENSG00000140839|Q6UXF7|CLEC18B;ENST00000569268.5_1_16:70208157-70217386:+|nuORF;nc|ENSG00000157335|Q8NCF0-2|CLEC18C;ENST00000569201.6_1_16:70208088-70217386:+|nuORF;ENST00000564976.5_1_16:70208088-70217795:+|nuORF;ENSG00000157335|ENST00000541793|CLEC18C;ENSG00000157322|ENST00000288040|CLEC18A	nc|ENSG00000140839|Q6UXF7-2|CLEC18B	nc|ENSG00000140839|Q6UXF7-2|CLEC18B	MSMS	A375_MHC_IP_R1	1	452.1814270019531	2	452.167133	902.319713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.583	1	73.583	73.083	74.083	0								0	0	0	0.16876	1	26795	26795		9.3474	0	1				22943	5188	16672	16789	22504	22504					-0.13535435894607417
ISTDTLGYY	9	Unmodified	_ISTDTLGYY_					0	0	0		GPA33|p.S206L|1|0.6|ENSG00000143167|chr1:167055804-167055804|G/A|missense_variant	GPA33|p.S206L|1|0.6|ENSG00000143167|chr1:167055804-167055804|G/A|missense_variant	GPA33|p.S206L|1|0.6|ENSG00000143167|chr1:167055804-167055804|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	517.7053833007812	2	516.747847	1031.48114	-0.59806	-0.00030905	0.2941	0.00015198	-0.30396	-0.00015707	516.7478837154542	76.345	0.65702	76.345	76.067	76.724	0					30	12	3	0	0	0	0.5339	1	27773	27773		18.135	3.5533	1	6744800			22944	14059	16673	16790	22505	22505					-0.033339487845069016
ISTDTLGYY	9	Unmodified	_ISTDTLGYY_					0	0	0		GPA33|p.S206L|1|0.6|ENSG00000143167|chr1:167055804-167055804|G/A|missense_variant	GPA33|p.S206L|1|0.6|ENSG00000143167|chr1:167055804-167055804|G/A|missense_variant	GPA33|p.S206L|1|0.6|ENSG00000143167|chr1:167055804-167055804|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	517.7047729492188	2	516.747847	1031.48114	-0.76023	-0.00039285	-0.04603	-2.3786E-05	-0.80626	-0.00041663	516.7477183436005	75.7	0.96708	76.441	75.976	76.943	0.74052					35	18	3	0	0	0	0.62719	1	28788	28788		13.508	13.508	1	8464900			22945	14059	16673	16790	22506	22506					-0.033339487845069016
ISTDTLGYY	9	Unmodified	_ISTDTLGYY_					0	0	0		GPA33|p.S206L|1|0.6|ENSG00000143167|chr1:167055804-167055804|G/A|missense_variant	GPA33|p.S206L|1|0.6|ENSG00000143167|chr1:167055804-167055804|G/A|missense_variant	GPA33|p.S206L|1|0.6|ENSG00000143167|chr1:167055804-167055804|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	516.747847	1031.48114	-0.59806	-0.00030905	0.2941	0.00015198	-0.30396	-0.00015707	516.7478837154542	76.345	0.65702	76.345	76.067	76.724	0	-0.048001	0.00021995	NaN	18.135	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6744800			22946	14059	16673	16790							-0.033339487845069016
ISTEFIHKL	9	Unmodified	_ISTEFIHKL_					0	0	0		ENSG00000180488|ENST00000370791|MIGA1;nc|ENSG00000180488|Q8NAN2|MIGA1;nc|ENSG00000180488|Q8NAN2-2|MIGA1;ENST00000476203.2_1_1:78269082-78324778:+|nuORF	ENSG00000180488|ENST00000370791|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	MULTI-MSMS	A375_MHC_IP_R1	1	363.6095275878906	3	363.209725	1086.60735	0.25753	9.3538E-05	-0.32895	-0.00011948	-0.07142	-2.594E-05	363.20957631620456	55.852	1.0152	55.852	55.533	56.548	0					38	19	3	0	0	0	0.073067	1	19967	19967		44.392	13.688	1	17379000			22947	8301	16674	16791	22507	22507					0.06750602511419856
ISTEFIHKL	9	Unmodified	_ISTEFIHKL_					0	0	0		ENSG00000180488|ENST00000370791|MIGA1;nc|ENSG00000180488|Q8NAN2|MIGA1;nc|ENSG00000180488|Q8NAN2-2|MIGA1;ENST00000476203.2_1_1:78269082-78324778:+|nuORF	ENSG00000180488|ENST00000370791|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	MULTI-SECPEP	A375_MHC_IP_R1	1	544.7105102539062	2	544.310949	1086.60735	-0.49547	-0.00026969	0.12737	6.9331E-05	-0.3681	-0.00020036	544.3108895989546	55.855	0.40671	55.855	55.584	55.991	0					17	7	3	0	0	0	0.11849	1	19988	19988		53.404	53.404	1	6150300			22948	8301	16674	16791	22508	22508					0.06750602511419856
ISTEFIHKL	9	Unmodified	_ISTEFIHKL_					0	0	0		ENSG00000180488|ENST00000370791|MIGA1;nc|ENSG00000180488|Q8NAN2|MIGA1;nc|ENSG00000180488|Q8NAN2-2|MIGA1;ENST00000476203.2_1_1:78269082-78324778:+|nuORF	ENSG00000180488|ENST00000370791|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	MULTI-MSMS	A375_MHC_IP_R2	2	363.60931396484375	3	363.209725	1086.60735	-0.23443	-8.5146E-05	-0.047268	-1.7168E-05	-0.2817	-0.00010231	363.2096888932186	54.969	0.81626	55.719	55.37	56.187	0.75075					35	15	4	0	0	0	0.050868	1	20710	20710		51.488	20.785	1	17072000			22949	8301	16674	16791	22509	22509					0.06750602511419856
ISTEFIHKL	9	Unmodified	_ISTEFIHKL_					0	0	0		ENSG00000180488|ENST00000370791|MIGA1;nc|ENSG00000180488|Q8NAN2|MIGA1;nc|ENSG00000180488|Q8NAN2-2|MIGA1;ENST00000476203.2_1_1:78269082-78324778:+|nuORF	ENSG00000180488|ENST00000370791|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	MULTI-SECPEP	A375_MHC_IP_R2	2	544.7106323242188	2	544.310949	1086.60735	-0.96309	-0.00052422	0.33219	0.00018081	-0.6309	-0.00034341	544.3110551426245	54.938	0.45925	55.688	55.422	55.881	0.75075					17	8	3	0	0	0	0.13093	1	20735	20735		67.838	67.838	1	4819200			22950	8301	16674	16791	22510	22510					0.06750602511419856
ISTEVNPKL	9	Unmodified	_ISTEVNPKL_					0	0	0		ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	MULTI-SECPEP	A375_MHC_IP_R1	1	501.18682861328125	2	500.787307	999.560061	-0.16477	-8.2513E-05	-0.2894	-0.00014493	-0.45417	-0.00022744	500.78711569821075	42.764	0.45549	42.764	42.537	42.993	0					13	8	2	0	0	0	0.10362	1	14844	14844		55.503	19.376	1	4318000			22951	944	16675	16792	22511	22511					0.060263232404167866
ISTGRTPKDF	10	Unmodified	_ISTGRTPKDF_					0	0	0			REV__nc|ENSG00000165716|Q5VUD6-2|DIPK1B	REV__nc|ENSG00000165716|Q5VUD6-2|DIPK1B	MULTI-SECPEP	A375_MHC_IP_R1	1	374.93634033203125	3	374.536501	1120.58767	0.53587	0.0002007	-0.80901	-0.00030301	-0.27315	-0.0001023	374.5361103660242	35.58	0.61345	35.58	35.319	35.932	0					17	11	2	0	0	0	0.92351	1	11869	11869		9.544	4.647	1	2813200	+		22952	20616	16676	16793	22512	22512					0.03220226500661738
ISTHGLSGKK	10	Unmodified	_ISTHGLSGKK_					0	0	0		CFAP61|p.P704S|1|0.21|ENSG00000089101|chr20:20246166-20246166|C/T|missense_variant	CFAP61|p.P704S|1|0.21|ENSG00000089101|chr20:20246166-20246166|C/T|missense_variant	CFAP61|p.P704S|1|0.21|ENSG00000089101|chr20:20246166-20246166|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	514.6982421875	2	514.298373	1026.58219	-0.74078	-0.00038098	0.55308	0.00028445	-0.1877	-9.6533E-05	514.2984201909117	131.24	1.6158	131.24	130.72	132.33	0					76	31	5	0	0	0	0.70651	1	50815	50815		9.3831	0	1	85287000			22953	373	16677	16794	22513	22513					0.0699654770885445
ISTLKVEL	8	Unmodified	_ISTLKVEL_					0	0	0		ENSG00000164989|ENST00000380701|CCDC171;nc|ENSG00000164989|Q6TFL3-4|CCDC171;nc|ENSG00000164989|Q6TFL3-3|CCDC171	ENSG00000164989|ENST00000380701|CCDC171	ENSG00000164989|ENST00000380701|CCDC171	MULTI-SECPEP	A375_MHC_IP_R2	2	452.18121337890625	2	451.781493	901.548434	-0.37108	-0.00016765	-0.023616	-1.0669E-05	-0.3947	-0.00017832	451.7813757554477	72.604	0.56016	73.339	73.073	73.633	0.73541					22	10	3	0	0	0	0.26691	1	27551	27551		78.149	16.792	1	3456100			22954	6903	16678	16795	22514	22514					0.09372126217078858
ISTLQSGIV	9	Unmodified	_ISTLQSGIV_					0	0	0			REV__ENST00000516201.1_2:234184409-234184622:+|nuORF	REV__ENST00000516201.1_2:234184409-234184622:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	918.3109741210938	1	917.530224	916.522947	-0.32256	-0.00029596	-0.41844	-0.00038393	-0.741	-0.00067989	917.5297835394979	103.14	1.3717	103.91	103.43	104.8	0.76428					64	26	4	0	0	0	0.059859	1	39198	39198		62.573	0	1	79495000	+		22955	25667	16679	16796	22515	22515					0.06134651694662807
ISTMEHGEKTL	11	Unmodified	_ISTMEHGEKTL_					0	0	0			REV__ENST00000454465.1_1_2:87355723-87398314:+|nuORF	REV__ENST00000454465.1_1_2:87355723-87398314:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	623.710205078125	2	623.31082	1244.60709	-0.49356	-0.00030764	-0.30698	-0.00019134	-0.80054	-0.00049899	623.3107520923384	28.37	0.55544	28.37	28.088	28.643	0					26	10	4	0	0	0	0.40526	1	8749	8749		53.404	5.8096	1	8811800	+		22956	24917	16680	16797	22516	22516					-0.005431852707260987
ISTMEHGEKTL	11	Unmodified	_ISTMEHGEKTL_					0	0	0			REV__ENST00000454465.1_1_2:87355723-87398314:+|nuORF	REV__ENST00000454465.1_1_2:87355723-87398314:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	623.7103881835938	2	623.31082	1244.60709	-0.78448	-0.00048897	0.032322	2.0147E-05	-0.75216	-0.00046883	623.3108626071704	27.793	0.65808	28.471	28.251	28.909	0.67857					23	12	3	0	0	0	0.76597	1	9535	9535		34.932	2.1464	1	8709900	+		22957	24917	16680	16797	22517	22517					-0.005431852707260987
ISTPIFRRL	9	Unmodified	_ISTPIFRRL_					0	0	0			REV__ENSG00000168538|ENST00000334690|TRAPPC11	REV__ENSG00000168538|ENST00000334690|TRAPPC11	MSMS	A375_MHC_IP_R1	1	368.2578125	3	368.229231	1101.66586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.388	1	24.388	23.888	24.888	0								0	0	0	0.15486	1	6912	6912		8.7454	1.1365	1		+		22958	20865	16681	16798	22518	22518					0.11909703876540334
ISTPNVNAL	9	Unmodified	_ISTPNVNAL_					0	0	0		ENSG00000113583|ENST00000231512|C5orf15	ENSG00000113583|ENST00000231512|C5orf15	ENSG00000113583|ENST00000231512|C5orf15	MULTI-MSMS	A375_MHC_IP_R1	1	465.15869140625	2	464.758549	927.502546	-0.0754	-3.5043E-05	-0.12581	-5.8472E-05	-0.20121	-9.3515E-05	464.7584310786636	72.296	0.81183	72.296	72.018	72.83	0					27	15	2	0	0	0	0.009271	1	26269	26269		103.75	32.615	1	4445400			22959	3163	16682	16799	22519	22519					0.03589481034839537
ISTPNVNAL	9	Unmodified	_ISTPNVNAL_					0	0	0		ENSG00000113583|ENST00000231512|C5orf15	ENSG00000113583|ENST00000231512|C5orf15	ENSG00000113583|ENST00000231512|C5orf15	MULTI-SECPEP	A375_MHC_IP_R2	2	465.1580810546875	2	464.758549	927.502546	-0.92544	-0.00043011	0.26894	0.00012499	-0.6565	-0.00030511	464.75862404654345	71.551	0.659	72.285	72.01	72.669	0.73421					26	12	3	0	0	0	0.10103	1	27129	27129		53.833	17.706	1	8844100			22960	3163	16682	16799	22520	22520					0.03589481034839537
ISTPVIRTF	9	Unmodified	_ISTPVIRTF_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	MULTI-MSMS	A375_MHC_IP_R1	1	517.7057495117188	2	517.305667	1032.59678	-0.3223	-0.00016673	-0.80822	-0.0004181	-1.1305	-0.00058483	517.3053166173746	71.64	6.3252	71.64	71.262	77.588	0					328	124	6	0	0	0	0.0092511	4	26199	26199;26630;27260;27470		103.42	31.497	1	5244000000			22961	1217	16683	16800	22521;22522;22523;22524	22521					0.08178619856994374
ISTPVIRTF	9	Unmodified	_ISTPVIRTF_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	MULTI-SECPEP	A375_MHC_IP_R1	1	517.1817626953125	2	517.305667	1032.59678	-0.45442	-0.00023508	-0.34796	-0.00018	-0.80238	-0.00041508	517.3055977666314	51.452	1.0634	51.452	50.613	51.676	0					31	20	2	0	0	0	0.4465	1	18284	18284		31.268	21.194	1	1331900			22962	1217	16683	16800	22525	22525					0.08178619856994374
ISTPVIRTF	9	Unmodified	_ISTPVIRTF_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	MULTI-SECPEP	A375_MHC_IP_R1	1	517.7055053710938	2	517.305667	1032.59678	-0.25147	-0.00013008	-0.15999	-8.2762E-05	-0.41145	-0.00021285	517.3056051340204	49.509	1.6297	49.509	48.983	50.613	0					65	31	3	0	0	0	0.13208	1	17497	17497		66.457	20.757	1	11167000			22963	1217	16683	16800	22526	22526					0.08178619856994374
ISTPVIRTF	9	Unmodified	_ISTPVIRTF_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	MULTI-SECPEP	A375_MHC_IP_R2	2	517.7055053710938	2	517.305667	1032.59678	-0.83098	-0.00042987	-0.14695	-7.6021E-05	-0.97794	-0.00050589	517.3055811943636	48.555	1.878	49.312	49.08	50.958	0.75736					67	36	3	0	0	0	0.087712	1	18220	18220		75.761	28.012	1	11284000			22964	1217	16683	16800	22527	22527					0.08178619856994374
ISTPVIRTF	9	Unmodified	_ISTPVIRTF_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	MULTI-SECPEP	A375_MHC_IP_R2	2	516.6424560546875	2	517.305667	1032.59678	-0.61273	-0.00031697	-0.035396	-1.8311E-05	-0.64813	-0.00033528	517.3056414231302	46.469	1.9805	47.235	46.906	48.887	0.76519					67	38	4	0	0	0	0.13244	1	17411	17411		51.415	13.24	1	56982000			22965	1217	16683	16800	22528	22528					0.08178619856994374
ISTRGTRFLLL	11	Unmodified	_ISTRGTRFLLL_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5;ENST00000506603.5_1_5:79058805-79095436:+|nuORF	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-MSMS	A375_MHC_IP_R2	2	426.6627197265625	3	426.262712	1275.76631	-0.28047	-0.00011955	0.029241	1.2464E-05	-0.25123	-0.00010709	426.2627421056361	40.463	0.45766	41.238	41.082	41.54	0.77451					15	8	3	0	0	0	0.57887	1	15029	15029		24.957	4.3761	1	2168000			22966	6823	16684	16801	22529	22529					0.13945316139597708
ISTTVRPV	8	Unmodified	_ISTTVRPV_					0	0	0			REV__ENST00000558604.1_1_15:89416965-89417136:+|nuORF	REV__ENST00000558604.1_1_15:89416965-89417136:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	437.1635437011719	2	436.763635	871.512717	-0.36882	-0.00016109	0.43702	0.00019088	0.068199	2.9787E-05	436.7637879722223	66.606	0.50935	66.606	66.326	66.836	0					14	9	2	0	0	0	0.7338	1	24156	24156		24.674	0.65332	1	1639700	+		22967	26138	16685	16802	22530	22530					0.071820887600893
ISTWAPPQV	9	Unmodified	_ISTWAPPQV_					0	0	0			REV__ENST00000404076.5_3_1:204924026-204926829:+|nuORF	REV__ENST00000404076.5_3_1:204924026-204926829:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	500.474853515625	2	499.768917	997.523281	-0.45507	-0.00022743	-0.056363	-2.8169E-05	-0.51144	-0.0002556	499.7689758559162	84.589	0.40318	85.325	85.069	85.472	0.73601					11	7	2	0	0	0	0.55359	1	32170	32170		10.824	0	1	657880	+		22968	24423	16686	16803	22531	22531					0.024420714145207967
ISTYDEKLY	9	Unmodified	_ISTYDEKLY_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.A743Pfs*37|1|0.43|ENSG00000117983|chr11:1233174-1233180|GCGGGCG/-|frameshift_variant;ENST00000525715.5_1_11:1244314-1260349:+|nuORF	ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	MULTI-SECPEP	A375_MHC_IP_R2	2	377.9728088378906	3	377.857128	1130.54956	0.25693	9.7084E-05	1.7079	0.00064536	1.9649	0.00074244	377.8580236403692	43.058	0.40465	43.83	43.623	44.028	0.7724					11	7	2	0	0	0	0.73363	1	16092	16092		10.8	1.2555	1	998320			22969	3519	16687	16804	22532	22532					-0.01049704204660884
ISTYQSWWRNV	11	Unmodified	_ISTYQSWWRNV_					0	0	0			REV__ENSG00000142959|ENST00000372207|BEST4	REV__ENSG00000142959|ENST00000372207|BEST4	MSMS	A375_MHC_IP_R2	2	480.47186279296875	3	480.573726	1438.69935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.367	1	36.131	35.631	36.631	0.76338								0	0	0	0.16338	1	12820	12820		1.1098	0	1		+		22970	19331	16688	16805	22533	22533					-0.0024533914220228326
ISVAAEHCQ	9	Unmodified	_ISVAAEHCQ_					0	0	0			REV__chr16:84022889-84029494|135|92.19|0.45|7.67|-|0|SLC38A8,SLC38A8|1	REV__chr16:84022889-84029494|135|92.19|0.45|7.67|-|0|SLC38A8,SLC38A8|1	MSMS	A375_MHC_IP_R2	2	479.1917724609375	2	479.226559	956.438566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.871	1	82.614	82.114	83.114	0.74293								0	0	0	0.1535	1	31100	31100		15.847	0	1		+		22971	15720	16689	16806	22534	22534					-0.04139622393756781
ISVAHTKIF	9	Unmodified	_ISVAHTKIF_					0	0	0		ZNF354B|p.L152F|1|0.35|ENSG00000178338|chr5:178882906-178882906|C/T|missense_variant	ZNF354B|p.L152F|1|0.35|ENSG00000178338|chr5:178882906-178882906|C/T|missense_variant	ZNF354B|p.L152F|1|0.35|ENSG00000178338|chr5:178882906-178882906|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	508.7003173828125	2	508.300384	1014.58622	-0.19996	-0.00010164	-0.34121	-0.00017344	-0.54117	-0.00027508	508.300152786613	71.64	1.515	71.64	71.415	72.93	0					51	29	3	0	0	0	0.34064	1	26214	26214		27.629	4.4804	1	14882000			22972	30215	16690	16807	22535	22535					0.07950637202543476
ISVCPKHFYHH	11	Unmodified	_ISVCPKHFYHH_					0	0	0			REV__nc|ENSG00000181191|Q8NG27-2|PJA1	REV__nc|ENSG00000181191|Q8NG27-2|PJA1	MSMS	A375_MHC_IP_R1	1	684.4014892578125	2	684.337507	1366.66046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.35	1	84.35	83.85	84.85	0								0	0	0	0.16249	1	30891	30891		5.7319	1.7875	1		+		22973	21640	16691	16808	22536	22536					-0.00820342977567634
ISVCRSLGCL	10	Unmodified	_ISVCRSLGCL_					0	0	0		ENST00000584977.5_1_18:46917135-46956764:-|nuORF	ENST00000584977.5_1_18:46917135-46956764:-|nuORF	ENST00000584977.5_1_18:46917135-46956764:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	525.6661987304688	2	525.775362	1049.53617	-0.90449	-0.00047556	2.063	0.0010847	1.1585	0.00060912	526.2774704353868	53.76	0.25674	54.511	54.404	54.661	0.75105					6	4	2	0	0	0	0.41513	1	20289	20289		32.037	5.7693	1	1454000			22974	13710	16692	16809	22537	22537					0.013384432107386601
ISVDDFAVPV	10	Unmodified	_ISVDDFAVPV_					0	0	0			REV__ENSG00000197024|ENST00000475153|ZNF398	REV__ENSG00000197024|ENST00000475153|ZNF398	MULTI-SECPEP	A375_MHC_IP_R1	1	531.6492309570312	2	531.279315	1060.54408	-0.46205	-0.00024548	-4.0924	-0.0021742	-4.5545	-0.0024197	531.2771893832545	72.471	0.50829	72.471	72.321	72.83	0					12	9	2	0	0	0	0.78945	1	26409	26409		25.399	1.3787	1	1815000	+		22975	22246	16693	16810	22538	22538					0.016226170034997267
ISVDRFLAI	9	Unmodified	_ISVDRFLAI_					0	0	0		ENSG00000139679|ENST00000620633|LPAR6;ENSG00000147145|ENST00000614823|LPAR4	ENSG00000139679|ENST00000620633|LPAR6	ENSG00000139679|ENST00000620633|LPAR6	MULTI-SECPEP	A375_MHC_IP_R1	1	517.7051391601562	2	517.305667	1032.59678	-0.46969	-0.00024297	0.60084	0.00031082	0.13115	6.7846E-05	517.3060719659154	82.823	1.673	82.823	82.316	83.989	0					59	32	3	0	0	0	0.41434	1	30272	30272		26.268	0	1	5609900			22976	5100	16694	16811	22539	22539					0.08178619856971636
ISVDRFLAI	9	Unmodified	_ISVDRFLAI_					0	0	0		ENSG00000139679|ENST00000620633|LPAR6;ENSG00000147145|ENST00000614823|LPAR4	ENSG00000139679|ENST00000620633|LPAR6	ENSG00000139679|ENST00000620633|LPAR6	MULTI-SECPEP	A375_MHC_IP_R2	2	517.6815185546875	2	517.305667	1032.59678	-0.60989	-0.0003155	-1.1184	-0.00057853	-1.7282	-0.00089403	517.3054964930247	86.869	1.1133	87.602	87.255	88.368	0.73301					59	21	5	0	0	0	0.38578	1	33186	33186		21.537	5.3879	1	3498000			22977	5100	16694	16811	22540	22540					0.08178619856971636
ISVEGREF	8	Unmodified	_ISVEGREF_					0	0	0		nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	MULTI-MSMS	A375_MHC_IP_R1	1	469.160888671875	2	468.742899	935.471246	-0.26743	-0.00012536	-0.051766	-2.4265E-05	-0.3192	-0.00014962	468.7428820819279	47.541	0.60936	47.541	47.159	47.768	0					22	11	3	0	0	0	0.69435	1	16696	16696		36.506	2.4038	1	6357100			22978	3847	16695	16812	22541	22541					0.000929080007608718
ISVEGREF	8	Unmodified	_ISVEGREF_					0	0	0		nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	MULTI-SECPEP	A375_MHC_IP_R2	2	469.1426696777344	2	468.742899	935.471246	-0.43489	-0.00020385	0.12545	5.8802E-05	-0.30944	-0.00014505	468.74294206046386	46.827	0.76314	47.588	47.054	47.817	0.76128					23	14	2	0	0	0	0.5161	1	17528	17528		38.176	0	1	7665800			22979	3847	16695	16812	22542	22542					0.000929080007608718
ISVERVIEY	9	Unmodified	_ISVERVIEY_					0	0	0		FGFR1OP-ABCC4|1|fusion;nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4	FGFR1OP-ABCC4|1|fusion	FGFR1OP-ABCC4|1|fusion	MULTI-SECPEP	A375_MHC_IP_R1	1	553.68798828125	2	554.305864	1106.59717	-0.49183	-0.00027262	0.21026	0.00011655	-0.28157	-0.00015607	554.3063022576251	68.786	0.35381	68.786	68.616	68.969	0					14	6	3	0	0	0	0.67471	1	24983	24983		22.658	9.6156	1	1456600			22980	3947	16696	16813	22543	22543					0.04813994786195508
ISVERVIEY	9	Unmodified	_ISVERVIEY_					0	0	0		FGFR1OP-ABCC4|1|fusion;nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4	FGFR1OP-ABCC4|1|fusion	FGFR1OP-ABCC4|1|fusion	MULTI-SECPEP	A375_MHC_IP_R2	2	553.68701171875	2	554.305864	1106.59717	-0.68809	-0.00038141	0.29902	0.00016575	-0.38907	-0.00021566	554.3061487758741	67.953	0.55916	68.688	68.459	69.018	0.73511					14	10	2	0	0	0	0.67539	1	25807	25807		21.537	0	1	1628400			22981	3947	16696	16813	22544	22544					0.04813994786195508
ISVEVRQKRHH	11	Unmodified	_ISVEVRQKRHH_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MSMS	A375_MHC_IP_R2	2	463.658447265625	3	463.600498	1387.77966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.605	1	32.341	31.841	32.841	0.73691								0	0	0	0.16275	1	11184	11184		4.4062	0.28952	1		+		22982	18661	16697	16814	22545	22545					0.1012856697150255
ISVFSSYWSY	10	Unmodified	_ISVFSSYWSY_					0	0	0		ENSG00000067836|ENST00000322048|ROGDI;ENST00000587377.5_1_16:4847463-4849700:-|nuORF;ENST00000588201.5_1_16:4847463-4848731:-|nuORF	ENSG00000067836|ENST00000322048|ROGDI	ENSG00000067836|ENST00000322048|ROGDI	MULTI-MSMS	A375_MHC_IP_R1	1	618.8187866210938	2	619.790047	1237.56554	-0.38654	-0.00023958	-2.4644	-0.0015274	-2.8509	-0.001767	619.7878019335083	73.155	1.0642	73.155	72.728	73.792	0					28	16	3	0	0	0	0.70329	1	26696	26696		10.824	2.9138	1	1841800			22983	1446	16698	16815	22546	22546					-0.043739979677638985
ISVGGLAGLRK	11	Unmodified	_ISVGGLAGLRK_					0	0	0		tr|U7T6I2|U7T6I2_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00249PE=3SV=1	tr|U7T6I2|U7T6I2_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00249PE=3SV=1	tr|U7T6I2|U7T6I2_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00249PE=3SV=1	MSMS	A375_MHC_IP_R2	2	357.6133728027344	3	357.560869	1069.66078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.907	1	42.681	42.181	43.181	0.77451								0	0	0	0.14085	1	15572	15572		16.275	0.53592	1				22984	30046	16699	16816	22547	22547					0.1287340001395023
ISVGSVGH	8	Unmodified	_ISVGSVGH_					0	0	0			REV__ENST00000589455.5_1_1:87597768-87599368:+|nuORF	REV__ENST00000589455.5_1_1:87597768-87599368:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	378.6280212402344	2	378.205953	754.397353	0.015786	5.9703E-06	0.090665	3.429E-05	0.10645	4.026E-05	378.20597034896224	26.196	0.55782	26.196	25.966	26.524	0					22	10	3	0	0	0	0.95423	1	7748	7748		12.532	0	1	7749700	+		22985	25055	16700	16817	22548	22548					0.010329846290915157
ISVILGDRW	9	Unmodified	_ISVILGDRW_					0	0	0		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	530.2030639648438	2	529.803291	1057.59203	-0.71503	-0.00037882	0.26188	0.00013874	-0.45315	-0.00024008	529.8033789199181	91.194	0.65778	91.194	90.946	91.604	0					26	12	3	0	0	0	0.053555	1	33503	33503		90.135	19.001	1	4081400			22986	2645	16701	16818	22549	22549					0.06553735714237519
ISVILGDRW	9	Unmodified	_ISVILGDRW_					0	0	0		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	530.2022705078125	2	529.803291	1057.59203	-0.48266	-0.00025571	-0.25895	-0.0001372	-0.74161	-0.00039291	529.803062296754	90.435	0.60932	91.169	90.854	91.463	0.7345					24	11	3	0	0	0	0.076731	1	34380	34380		80.676	19.319	1	3497900			22987	2645	16701	16818	22550	22550					0.06553735714237519
ISVILTILKSW	11	Unmodified	_ISVILTILKSW_					0	0	0			REV__ENSG00000130477|ENST00000519716|UNC13A	REV__ENSG00000130477|ENST00000519716|UNC13A	MSMS	A375_MHC_IP_R1	1	636.9990844726562	2	636.899931	1271.78531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.367	1	88.367	87.867	88.867	0								0	0	0	0.16297	1	32438	32438		3.2813	0.28607	1		+		22988	18541	16702	16819	22551	22551					0.1602885271058767
ISVLWEAEV	9	Unmodified	_ISVLWEAEV_					0	0	0		AluJb_dup67344|chrX:101343228-101343524:-|1.025191611396585|0.4295932882606487|1.25|471.0|1|1|sense	AluJb_dup67344|chrX:101343228-101343524:-|1.025191611396585|0.4295932882606487|1.25|471.0|1|1|sense	AluJb_dup67344|chrX:101343228-101343524:-|1.025191611396585|0.4295932882606487|1.25|471.0|1|1|sense	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1809692382812	2	523.281857	1044.54916	-0.63447	-0.00033201	1.9162	0.0010027	1.2818	0.00067072	523.2825426185381	55.562	0.35363	56.312	56.187	56.54	0.75075					10	6	2	0	0	0	0.65246	1	21024	21024		15.847	5.7733	1	1441000			22989	110	16703	16820	22552	22552					0.02866920866131295
ISVLYWTRM	9	Unmodified	_ISVLYWTRM_					0	0	0			REV__BMS1|p.P1103L|1|0.24|ENSG00000165733|chr10:42823636-42823636|C/T|missense_variant	REV__BMS1|p.P1103L|1|0.24|ENSG00000165733|chr10:42823636-42823636|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	584.6828002929688	2	584.812802	1167.61105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.702	1	84.702	84.202	85.202	0								0	0	0	0.15486	1	31032	31032		10.824	2.9138	1		+		22990	15517	16704	16821	22553	22553					0.03394949013613768
ISVPIFKQF	9	Unmodified	_ISVPIFKQF_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000460826.1_1_2:242186148-242187441:-|nuORF;ENST00000488923.1_1_2:242186148-242186740:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	A375_MHC_IP_R1	1	539.6861572265625	2	539.81841	1077.62227	-0.61952	-0.00033443	0.38193	0.00020617	-0.23759	-0.00012825	539.8185821042289	104.26	1.3195	104.26	103.88	105.2	0					74	25	5	0	0	0	0.0095758	1	38307	38307		183.04	107.28	1	82491000			22991	3330	16705	16822	22554	22554					0.08656094379398382
ISVPIFKQF	9	Unmodified	_ISVPIFKQF_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000460826.1_1_2:242186148-242187441:-|nuORF;ENST00000488923.1_1_2:242186148-242186740:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	A375_MHC_IP_R2	2	539.6868286132812	2	539.81841	1077.62227	-0.82656	-0.00044619	0.12307	6.6434E-05	-0.70349	-0.00037976	539.8184340416759	103.35	1.577	104.12	103.74	105.31	0.76428					74	30	5	0	0	0	0.010853	1	39163	39163		172.91	80.415	1	75983000			22992	3330	16705	16822	22555	22555					0.08656094379398382
ISVQVPAAAF	10	Unmodified	_ISVQVPAAAF_					0	0	0		ENSG00000134508|ENST00000256925|CABLES1	ENSG00000134508|ENST00000256925|CABLES1	ENSG00000134508|ENST00000256925|CABLES1	MULTI-SECPEP	A375_MHC_IP_R1	1	502.18505859375	2	501.784567	1001.55458	-0.45716	-0.00022939	1.0649	0.00053435	0.60775	0.00030496	501.7850004695061	64.995	0.60788	64.995	64.649	65.257	0					18	11	2	0	0	0	0.51493	1	23546	23546		19.362	0	1	2010100			22993	4582	16706	16823	22556	22556					0.05386644448606148
ISVREAKAI	9	Unmodified	_ISVREAKAI_					0	0	0		nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	MULTI-SECPEP	A375_MHC_IP_R2	2	494.20281982421875	2	493.803291	985.59203	-0.7037	-0.00034749	-0.048851	-2.4123E-05	-0.75255	-0.00037161	493.803201701348	62.138	0.50799	62.88	62.571	63.079	0.74263					16	9	2	0	0	0	0.63327	1	23574	23574		13.042	9.446	1	1508300			22994	6826	16707	16824	22557	22557					0.09865735714231505
ISVRIKKDKL	10	Unmodified	_ISVRIKKDKL_					0	0	0			REV__tr|U7SNR0|U7SNR0_FUSNUBiotin-[acetyl-CoA-carboxylase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01913PE=4SV=1	REV__tr|U7SNR0|U7SNR0_FUSNUBiotin-[acetyl-CoA-carboxylase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01913PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	401.6428527832031	3	400.599324	1198.77614	-0.35996	-0.0001442	0.015454	6.1908E-06	-0.34451	-0.00013801	400.5992939522498	20.341	2.0788	20.952	20.197	22.276	0.61029					116	40	5	0	0	0	0.72061	1	6192	6192		3.0723	0.22898	1	56894000	+		22995	28337	16708	16825	22558	22558					0.18470504144943334
ISVSRSTSF	9	Unmodified	_ISVSRSTSF_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000510337.1_1_5:122971848-122972142:+|nuORF;ENST00000411618.1_1_9:30800375-30800732:-|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000396959.2_1_3:12829511-12830132:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	MULTI-SECPEP	A375_MHC_IP_R1	1	492.4773254394531	2	492.261456	982.50836	-0.68449	-0.00033695	-1.2798	-0.00062998	-1.9643	-0.00096693	492.26136244345133	38.219	0.71551	38.219	37.913	38.628	0					22	13	3	0	0	0	0.37663	1	12901	12901		36.506	11.107	1	2873100			22996	2963;11498	16709	16826	22559	22559					0.016405795465288975
ISVSRSTSF	9	Unmodified	_ISVSRSTSF_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000510337.1_1_5:122971848-122972142:+|nuORF;ENST00000411618.1_1_9:30800375-30800732:-|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000396959.2_1_3:12829511-12830132:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	MULTI-SECPEP	A375_MHC_IP_R2	2	492.4771423339844	2	492.261456	982.50836	-0.95133	-0.0004683	-0.91806	-0.00045193	-1.8694	-0.00092023	492.26127676320425	37.369	0.56193	38.14	37.867	38.429	0.7709					20	10	3	0	0	0	0.14606	1	13697	13697		55.503	21.315	1	4006100			22997	2963;11498	16709	16826	22560	22560					0.016405795465288975
ISVSSGLSQCY	11	Unmodified	_ISVSSGLSQCY_					0	0	0		ENSG00000053254|ENST00000557258|FOXN3;nc|ENSG00000053254|O00409|FOXN3	ENSG00000053254|ENST00000557258|FOXN3	ENSG00000053254|ENST00000557258|FOXN3	MSMS	A375_MHC_IP_R2	2	572.2058715820312	2	572.271164	1142.52777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.566	1	67.302	66.802	67.802	0.73631								0	0	0	0.15541	1	25220	25220		17.113	5.4726	1				22998	1244	16710	16827	22561	22561					-0.03778832224861617
ISVSSGLSQCY	11	Unmodified	_ISVSSGLSQCY_					0	0	0		ENSG00000053254|ENST00000557258|FOXN3;nc|ENSG00000053254|O00409|FOXN3	ENSG00000053254|ENST00000557258|FOXN3	ENSG00000053254|ENST00000557258|FOXN3	MSMS	A375_MHC_IP_R2	2	572.2481689453125	2	572.271164	1142.52777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.644	1	67.381	66.881	67.881	0.73631								0	0	0	0.15541	1	25249	25249		17.113	6.289	1				22999	1244	16710	16827	22562	22562					-0.03778832224861617
ISVTVVGGPV	10	Unmodified	_ISVTVVGGPV_					0	0	0		tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1	tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1	tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	464.67901611328125	2	464.279118	926.543683	-0.21119	-9.8049E-05	0.001019	4.7308E-07	-0.21017	-9.7576E-05	464.279063425065	50.904	0.76057	50.904	50.408	51.168	0					25	14	2	0	0	0	0.2728	1	17957	17957		48.346	0	1	4125600			23000	29466	16711	16828	22563	22563					0.07747242074333371
ISVWVSCPEQ	10	Unmodified	_ISVWVSCPEQ_					0	0	0			REV__ENST00000602656.1_1_16:67691843-67692206:-|nuORF	REV__ENST00000602656.1_1_16:67691843-67692206:-|nuORF	MSMS	A375_MHC_IP_R2	2	574.1649780273438	2	574.276249	1146.53795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.01	1	101.77	101.27	102.27	0.76428								0	0	0	0.15435	1	38292	38292		6.7232	0.96273	1		+		23001	26515	16712	16829	22564	22564					-0.029462244996466325
ISVWWLDV	8	Unmodified	_ISVWWLDV_					0	0	0		ENST00000367033.3_1_1:208417032-208417233:-|nuORF	ENST00000367033.3_1_1:208417032-208417233:-|nuORF	ENST00000367033.3_1_1:208417032-208417233:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	508.70208740234375	2	509.273835	1016.53312	-0.60895	-0.00031012	-0.37552	-0.00019124	-0.98448	-0.00050137	509.27371540650626	66.343	0.71211	66.343	65.972	66.684	0					26	13	3	0	0	0	0.86765	1	23903	23903		24.674	0	1	5103800			23002	11075	16713	16830	22565	22565					0.025512594198858096
ISVYMNVY	8	Unmodified	_ISVYMNVY_					0	0	0			REV__ENSG00000174944|ENST00000309170|P2RY14	REV__ENSG00000174944|ENST00000309170|P2RY14	MSMS	A375_MHC_IP_R1	1	494.6947326660156	2	494.744053	987.473554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.179	1	87.179	86.679	87.679	0								0	0	0	0.16876	1	31984	31984		14.582	1.0738	1		+		23003	21314	16714	16831	22566	22566					-0.02068379585796265
ISWAMVNL	8	Unmodified	_ISWAMVNL_					0	0	0		MAN1A2|p.P309S|1|0.07|ENSG00000198162|chr1:117442300-117442300|C/T|missense_variant	MAN1A2|p.P309S|1|0.07|ENSG00000198162|chr1:117442300-117442300|C/T|missense_variant	MAN1A2|p.P309S|1|0.07|ENSG00000198162|chr1:117442300-117442300|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	468.14825439453125	2	467.246763	932.478974	-0.39437	-0.00018427	-0.26751	-0.000125	-0.66188	-0.00030926	467.24678639950014	94.916	2.1853	94.916	94.394	96.58	0					92	42	4	0	0	0	0.77488	1	34827	34827		13.508	0.97634	1	5268500			23004	14342	16715	16832	22567	22567					0.010033439966832702
ISWDYSEF	8	Unmodified	_ISWDYSEF_					0	0	0		ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	MSMS	A375_MHC_IP_R2	2	523.7230224609375	2	523.726915	1045.43928	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.618	1	55.369	54.869	55.869	0.75075								0	0	0	0.16876	1	20614	20614		14.582	4.3983	1				23005	9311	16716	16833	22568	22568					-0.0816250447303446
ISWFGTVW	8	Unmodified	_ISWFGTVW_					0	0	0		ENST00000360803.8_1_10:1063197-1063275:+|nuORF	ENST00000360803.8_1_10:1063197-1063275:+|nuORF	ENST00000360803.8_1_10:1063197-1063275:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	498.65252685546875	2	498.252903	994.491253	-0.37179	-0.00018524	-1.5747	-0.00078458	-1.9464	-0.00096982	498.2518876136329	86.424	0.51115	87.157	86.896	87.407	0.733					18	9	3	0	0	0	0.75322	1	32918	32918		19.439	1.304	1	1659300			23006	11035	16717	16834	22569	22569					-0.006212962686277024
ISWFGTVW	8	Unmodified	_ISWFGTVW_					0	0	0		ENST00000360803.8_1_10:1063197-1063275:+|nuORF	ENST00000360803.8_1_10:1063197-1063275:+|nuORF	ENST00000360803.8_1_10:1063197-1063275:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	498.252903	994.491253	-0.46094	-0.00022966	-2.1504	-0.0010714	-2.6113	-0.0013011	498.2516431350634	87.254	0.50859	87.254	87.034	87.542	0	0.048405	-0.00013425	NaN	19.439	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2672600			23007	11035	16717	16834							-0.006212962686277024
ISWKDGLAF	9	Unmodified	_ISWKDGLAF_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1681518554688	2	518.776742	1035.53893	-0.81296	-0.00042174	-0.4109	-0.00021316	-1.2239	-0.00063491	518.7765311356425	97.614	0.30387	98.37	98.281	98.585	0.75586					7	5	2	0	0	0	0.55534	1	37055	37055		32.037	15.095	1	1343100			23008	4242	16718	16835	22570	22570					0.022583579315551106
ISWKDGLGF	9	Unmodified	_ISWKDGLGF_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	A375_MHC_IP_R1	1	512.2032470703125	2	511.768917	1021.52328	-0.37569	-0.00019227	0.49424	0.00025294	0.11855	6.0673E-05	511.76913051177695	97.318	0.60545	97.318	96.985	97.59	0					15	11	2	0	0	0	0.32889	1	35724	35724		28.495	1.6109	1	1063800			23009	1529	16719	16836	22571	22571					0.013380714145228012
ISWKDGLGF	9	Unmodified	_ISWKDGLGF_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MATCH	A375_MHC_IP_R2	2		2	511.768917	1021.52328	-0.83665	-0.00042817	0.53651	0.00027457	-0.30014	-0.0001536	511.76927171067354	96.588	0.45428	97.343	97.064	97.519	0.75586	0.012618	3.5341E-05	NaN	28.495	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1019600			23010	1529	16719	16836							0.013380714145228012
ISWKGCFL	8	Unmodified	_ISWKGCFL_					0	0	0		ENST00000580151.5_1_17:73282751-73284642:-|nuORF	ENST00000580151.5_1_17:73282751-73284642:-|nuORF	ENST00000580151.5_1_17:73282751-73284642:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	476.59844970703125	2	477.249306	952.484059	-0.28339	-0.00013525	0.049773	2.3754E-05	-0.23362	-0.00011149	477.249233636537	99.619	0.45678	100.38	100.27	100.73	0.76278					10	8	2	0	0	0	0.93416	1	37752	37752		14.582	14.582	1	736630			23011	13671	16720	16837	22572	22572					0.005916478593007923
ISWKKIIVV	9	Unmodified	_ISWKKIIVV_					0	0	0			REV__ENSG00000139974|ENST00000267488|SLC38A6	REV__ENSG00000139974|ENST00000267488|SLC38A6	MULTI-SECPEP	A375_MHC_IP_R2	2	361.9417724609375	3	362.574227	1084.70085	-0.060662	-2.1995E-05	-0.7474	-0.00027099	-0.80806	-0.00029298	362.5741093034916	46.116	0.30411	46.881	46.704	47.008	0.76519					7	5	2	0	0	0	0.80101	1	17255	17255		1.0715	1.0715	1	922960	+		23012	19187	16721	16838	22573	22573					0.16188946684519578
ISWKRKKRRLE	11	Unmodified	_ISWKRKKRRLE_					0	0	0		ENST00000234296.6_1_2:201776004-201776058:-|nuORF	ENST00000234296.6_1_2:201776004-201776058:-|nuORF	ENST00000234296.6_1_2:201776004-201776058:-|nuORF	MSMS	A375_MHC_IP_R2	2	750.8202514648438	2	750.467701	1498.92085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.98	1	115.67	115.17	116.17	0.68999								0	0	0	0.16351	1	43344	43344		1.3295	0.9789	1				23013	10155	16722	16839	22574	22574					0.19134565344756993
ISWRDTLSQKF	11	Unmodified	_ISWRDTLSQKF_					0	0	0		nc|ENSG00000111261|Q9H8J5-2|MANSC1;ENSG00000111261|ENST00000535902|MANSC1	nc|ENSG00000111261|Q9H8J5-2|MANSC1	nc|ENSG00000111261|Q9H8J5-2|MANSC1	MULTI-MSMS	A375_MHC_IP_R1	1	461.3133544921875	3	460.91386	1379.71975	-0.23698	-0.00010923	-0.08994	-4.1455E-05	-0.32692	-0.00015068	460.9137769475417	74.579	0.50736	74.579	74.298	74.805	0					21	9	3	0	0	0	0.72638	1	27154	27154		12.35	0.12275	1	3470900			23014	2977	16723	16840	22575	22575					0.04507831517594241
ISWRDTLSQKF	11	Unmodified	_ISWRDTLSQKF_					0	0	0		nc|ENSG00000111261|Q9H8J5-2|MANSC1;ENSG00000111261|ENST00000535902|MANSC1	nc|ENSG00000111261|Q9H8J5-2|MANSC1	nc|ENSG00000111261|Q9H8J5-2|MANSC1	MULTI-MSMS	A375_MHC_IP_R2	2	461.313232421875	3	460.91386	1379.71975	-0.42024	-0.0001937	-0.019679	-9.0703E-06	-0.43992	-0.00020277	460.913806172871	73.78	0.56147	74.516	74.243	74.805	0.7354					17	10	2	0	0	0	0.69246	1	28016	28016		16.137	3.9096	1	2504300			23015	2977	16723	16840	22576	22576					0.04507831517594241
ISWRKHLVD	9	Unmodified	_ISWRKHLVD_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-SECPEP	A375_MHC_IP_R1	1	384.60833740234375	3	385.220735	1152.64038	0.37183	0.00014324	-1.2124	-0.00046705	-0.84059	-0.00032381	385.22033854714056	45.946	0.35613	45.946	45.738	46.094	0					9	6	2	0	0	0	0.80713	1	16151	16151		2.086	0.49373	1	841940	+		23016	20388	16724	16841	22577	22577					0.07016229354121606
ISWSGSHL	8	Unmodified	_ISWSGSHL_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	MULTI-SECPEP	A375_MHC_IP_R1	1	442.9665222167969	2	443.72451	885.434466	0.28005	0.00012427	0.043054	1.9104E-05	0.32311	0.00014337	443.72446555075135	49.502	0.50814	49.502	49.285	49.793	0					15	9	2	0	0	0	0.972	1	17426	17426		10.183	10.183	1	1233300			23017	9013	16725	16842	22578	22578					-0.012833438251504958
ISWSGSHL	8	Unmodified	_ISWSGSHL_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	MULTI-MATCH	A375_MHC_IP_R2	2		2	443.72451	885.434466	-0.40591	-0.00018011	-0.25496	-0.00011313	-0.66087	-0.00029325	443.72442247778275	48.625	0.40651	49.382	49.13	49.536	0.75737	-0.060099	-0.00017185	NaN	10.183	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1515300			23018	9013	16725	16842							-0.012833438251504958
ISYANVTGPV	10	Unmodified	_ISYANVTGPV_					0	0	0		nc|ENSG00000139910|P51513-5|NOVA1;ENSG00000139910|ENST00000539517|NOVA1;NOVA1|p.G269Dfs*21|1|0.34|ENSG00000139910|chr14:26448677-26448677|C/-|frameshift_variant;NOVA1|p.L385Ffs*3|1|0.62|ENSG00000139910|chr14:26448328-26448329|-/A|frameshift_variant	nc|ENSG00000139910|P51513-5|NOVA1	nc|ENSG00000139910|P51513-5|NOVA1	MSMS	A375_MHC_IP_R1	1	510.69781494140625	2	510.771657	1019.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.385	1	60.385	59.885	60.885	0								0	0	0	0.15308	1	21739	21739		10.824	0	1				23019	5116	16726	16843	22579	22579					0.019777502063448082
ISYDLEEEEE	10	Unmodified	_ISYDLEEEEE_					0	0	0		ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	MSMS	A375_MHC_IP_R2	2	628.1326904296875	2	628.264256	1254.51396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.165	1	97.921	97.421	98.421	0.75586								0	0	0	0.15435	1	36881	36881		6.7232	0.99131	1				23020	9059	16727	16844	22580	22580					-0.10311831242984226
ISYGPDWKDFY	11	Unmodified	_ISYGPDWKDFY_					0	0	0		ENSG00000213614|ENST00000268097|HEXA;ENST00000566672.5_1_15:72638574-72647950:-|nuORF	ENSG00000213614|ENST00000268097|HEXA	ENSG00000213614|ENST00000268097|HEXA	MULTI-SECPEP	A375_MHC_IP_R1	1	695.9398803710938	2	695.819335	1389.62412	-0.61309	-0.0004266	0.011931	8.3021E-06	-0.60116	-0.0004183	695.8192168331146	99.967	0.65536	99.967	99.624	100.28	0					27	12	3	0	0	0	0.029164	1	36685	36685		105.35	75.505	1	11421000			23021	9574	16728	16845	22581	22581					-0.0551094139327688
ISYGPDWKDFY	11	Unmodified	_ISYGPDWKDFY_					0	0	0		ENSG00000213614|ENST00000268097|HEXA;ENST00000566672.5_1_15:72638574-72647950:-|nuORF	ENSG00000213614|ENST00000268097|HEXA	ENSG00000213614|ENST00000268097|HEXA	MULTI-MSMS	A375_MHC_IP_R2	2	695.9266357421875	2	695.819335	1389.62412	-0.48926	-0.00034044	-0.31427	-0.00021868	-0.80353	-0.00055911	695.8189194822396	99.374	0.66206	100.13	99.758	100.42	0.75977					29	12	3	0	0	0	0.00082022	1	37690	37690		106.37	76.525	1	14912000			23022	9574	16728	16845	22582	22582					-0.0551094139327688
ISYINDEPKC	10	Unmodified	_ISYINDEPKC_					0	0	0			REV__ENSG00000175970|ENST00000344651|UNC119B	REV__ENSG00000175970|ENST00000344651|UNC119B	MSMS	A375_MHC_IP_R2	2	591.3528442382812	2	591.278989	1180.54342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.17	1	122.54	122.04	123.04	0.3766								0	0	0	0.1524	1	46785	46785		13.042	0.51092	1		+		23023	21378	16729	16846	22583	22583					-0.03962545707827303
ISYLKWRYYVH	11	Unmodified	_ISYLKWRYYVH_					0	0	0			REV__nc|ENSG00000163714|O15042-3|U2SURP	REV__nc|ENSG00000163714|O15042-3|U2SURP	MSMS	A375_MHC_IP_R2	2	764.7626953125	2	764.408986	1526.80342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.497	1	85.233	84.733	85.733	0.73601								0	0	0	0.16334	1	32121	32121		1.3295	0.25807	1		+		23024	20403	16730	16847	22584	22584					0.06108987685320244
ISYLRVRKL	9	Unmodified	_ISYLRVRKL_					0	0	0		ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	ENSG00000100644|ENST00000337138|HIF1A	ENSG00000100644|ENST00000337138|HIF1A	MULTI-MSMS	A375_MHC_IP_R1	1	383.64849853515625	3	383.248514	1146.72371	0.14989	5.7446E-05	-0.060847	-2.332E-05	0.089044	3.4126E-05	383.2484055433488	36.334	0.56002	36.334	36.084	36.644	0					24	10	3	0	0	0	0.44183	2	12151	12151;12220		22.658	9.0432	1	8604800			23025	2206	16731	16848	22585;22586	22585					0.15621965801983606
ISYLRVRKL	9	Unmodified	_ISYLRVRKL_					0	0	0		ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	ENSG00000100644|ENST00000337138|HIF1A	ENSG00000100644|ENST00000337138|HIF1A	MULTI-MSMS	A375_MHC_IP_R2	2	383.6482238769531	3	383.248514	1146.72371	-0.34014	-0.00013036	0.49807	0.00019088	0.15793	6.0525E-05	383.2486594808014	35.233	0.35406	35.996	35.829	36.183	0.76338					17	6	3	0	0	0	0.2415	1	12764	12764		34.932	7.7088	1	7478000			23026	2206	16731	16848	22587	22587					0.15621965801983606
ISYMIYRLAQ	10	Unmodified	_ISYMIYRLAQ_					0	0	0		ENSG00000177025|ENST00000314391|C19orf18	ENSG00000177025|ENST00000314391|C19orf18	ENSG00000177025|ENST00000314391|C19orf18	MULTI-SECPEP	A375_MHC_IP_R2	2	629.053466796875	2	629.336641	1256.65873	-0.73699	-0.00046382	-2.6511	-0.0016684	-3.388	-0.0021322	629.3347170784203	87.896	0.75936	88.627	88.066	88.825	0.7318					19	14	2	0	0	0	0.91909	1	33297	33297		13.906	13.305	1	1457000			23027	8054	16732	16849	22588	22588					0.04066603213823328
ISYNKYKNRIK	11	Unmodified	_ISYNKYKNRIK_					0	0	0		tr|U7T5W1|U7T5W1_FUSNUHTHluxR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00104PE=4SV=1	tr|U7T5W1|U7T5W1_FUSNUHTHluxR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00104PE=4SV=1	tr|U7T5W1|U7T5W1_FUSNUHTHluxR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00104PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	476.67657470703125	3	476.277021	1425.80923	-0.77918	-0.00037111	0.33605	0.00016005	-0.44313	-0.00021105	476.27704603080514	36.524	0.50885	36.524	36.236	36.745	0					21	9	3	0	0	0	0.66366	1	12232	12232		11.065	5.1971	1	6147900			23028	30032	16733	16850	22589	22589					0.11336086196979522
ISYPLLHEW	9	Unmodified	_ISYPLLHEW_					0	0	0		ENSG00000197172|ENST00000329342|MAGEA6	ENSG00000197172|ENST00000329342|MAGEA6	ENSG00000197172|ENST00000329342|MAGEA6	MSMS	A375_MHC_IP_R1	1	579.5036010742188	2	579.303124	1156.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.45	1	100.45	99.954	100.95	0								0	0	0	0.15486	1	36923	36923		12.532	0.89125	1				23029	9127	16734	16851	22590	22590					0.0196631599437751
ISYPPLHEW	9	Unmodified	_ISYPPLHEW_					0	0	0		ENSG00000213401|ENST00000393869|MAGEA12;chrX:152733859-152736087|323|82.7|0.12|9.43|+|ENST00000357916|MAGEA12,MAGEA12;ENSG00000221867|ENST00000370278|MAGEA3;chrX:152698829-152700558|283|12.93|0.02|9.51|+|ENST00000598245|MAGEA3,MAGEA3	ENSG00000213401|ENST00000393869|MAGEA12;ENSG00000221867|ENST00000370278|MAGEA3	ENSG00000221867|ENST00000370278|MAGEA3	MULTI-SECPEP	A375_MHC_IP_R1	1	571.6885375976562	2	571.287474	1140.5604	-0.38626	-0.00022066	1.5047	0.00085963	1.1185	0.00063897	571.2881107169676	80.911	0.9634	80.911	80.492	81.455	0					31	18	2	0	0	0	0.58271	1	29541	29541		20.454	9.6541	1	3371000			23030	523;521	16735	16852	22591	22591					-0.004262570397031595
ISYPPLHEW	9	Unmodified	_ISYPPLHEW_					0	0	0		ENSG00000213401|ENST00000393869|MAGEA12;chrX:152733859-152736087|323|82.7|0.12|9.43|+|ENST00000357916|MAGEA12,MAGEA12;ENSG00000221867|ENST00000370278|MAGEA3;chrX:152698829-152700558|283|12.93|0.02|9.51|+|ENST00000598245|MAGEA3,MAGEA3	ENSG00000213401|ENST00000393869|MAGEA12;ENSG00000221867|ENST00000370278|MAGEA3	ENSG00000221867|ENST00000370278|MAGEA3	MULTI-MATCH	A375_MHC_IP_R2	2		2	571.287474	1140.5604	-0.28357	-0.000162	1.6446	0.00093952	1.361	0.00077752	571.2876315684388	80.244	1.2174	80.989	80.199	81.416	0.74473	0.038857	7.2466E-05	NaN	20.454	38	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4440800			23031	523;521	16735	16852							-0.004262570397031595
ISYRDPHFW	9	Unmodified	_ISYRDPHFW_					0	0	0		ENSG00000145740|ENST00000396591|SLC30A5	ENSG00000145740|ENST00000396591|SLC30A5	ENSG00000145740|ENST00000396591|SLC30A5	MULTI-SECPEP	A375_MHC_IP_R1	1	407.29278564453125	3	407.533091	1219.57744	-0.25563	-0.00010418	0.1246	5.0779E-05	-0.13103	-5.3397E-05	407.5332266959927	64.521	0.40775	64.521	64.292	64.7	0					12	7	2	0	0	0	0.78798	1	23314	23314		4.5289	0.65253	1	1971500			23032	5577	16736	16853	22592	22592					-0.02356336433922479
ISYRDPHFW	9	Unmodified	_ISYRDPHFW_					0	0	0		ENSG00000145740|ENST00000396591|SLC30A5	ENSG00000145740|ENST00000396591|SLC30A5	ENSG00000145740|ENST00000396591|SLC30A5	MULTI-SECPEP	A375_MHC_IP_R2	2	407.2926025390625	3	407.533091	1219.57744	0.080906	3.2972E-05	0.16887	6.882E-05	0.24977	0.00010179	407.8675531040506	63.825	0.60902	64.565	64.191	64.8	0.74023					14	11	2	0	0	0	0.62767	1	24248	24248		16.149	12.829	1	1066500			23033	5577	16736	16853	22593	22593					-0.02356336433922479
ISYVHILCV	9	Unmodified	_ISYVHILCV_					0	0	0		OR2A25|p.A223V|1|0.13|ENSG00000221933|chr7:144074887-144074887|C/T|missense_variant	OR2A25|p.A223V|1|0.13|ENSG00000221933|chr7:144074887-144074887|C/T|missense_variant	OR2A25|p.A223V|1|0.13|ENSG00000221933|chr7:144074887-144074887|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	523.6110229492188	2	523.788795	1045.56304	-0.39577	-0.0002073	-0.23952	-0.00012546	-0.6353	-0.00033276	523.7879557605928	62.946	0.46141	62.946	62.66	63.121	0					10	8	2	0	0	0	0.67221	1	22669	22669		4.756	0	1	815440			23034	15068	16737	16854	22594	22594					0.042078750935843345
ISYVLGPVR	9	Unmodified	_ISYVLGPVR_					0	0	0		ENSG00000171714|ENST00000324559|ANO5	ENSG00000171714|ENST00000324559|ANO5	ENSG00000171714|ENST00000324559|ANO5	MULTI-MSMS	A375_MHC_IP_R1	1	501.6976318359375	2	502.300384	1002.58622	-0.3417	-0.00017163	0.52645	0.00026444	0.18476	9.2803E-05	502.30058821334904	103.44	0.81316	103.44	103.12	103.93	0					20	15	2	0	0	0	0.60101	1	38068	38068		14.838	2.3067	1	1807200			23035	7630	16738	16855	22595	22595					0.08502637202570895
ISYYIRRSSR	10	Unmodified	_ISYYIRRSSR_					0	0	0			REV__ENST00000348165.9_1_7:157000460-157000568:+|nuORF	REV__ENST00000348165.9_1_7:157000460-157000568:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	434.637939453125	3	434.242199	1299.70477	-0.33741	-0.00014652	0.035252	1.5308E-05	-0.30216	-0.00013121	434.5764148657841	27.951	0.30506	28.63	28.452	28.757	0.67857					11	5	3	0	0	0	0.71693	1	9561	9561		4.7159	1.3602	1	3786800	+		23036	23786	16739	16856	22596	22596					0.0669038444027592
ISYYIRRSSR	10	Unmodified	_ISYYIRRSSR_					0	0	0			REV__ENST00000348165.9_1_7:157000460-157000568:+|nuORF	REV__ENST00000348165.9_1_7:157000460-157000568:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	434.242199	1299.70477	-0.33741	-0.00014652	0.035252	1.5308E-05	-0.30216	-0.00013121	434.5764148657841	27.951	0.30506	28.63	28.452	28.757	0.67857	-0.09526	1.9226E-05	NaN	4.7159	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3786800	+		23037	23786	16739	16856							0.0669038444027592
ITAARPTNYML	11	Unmodified	_ITAARPTNYML_					0	0	0			REV__ENSG00000005249|ENST00000265717|PRKAR2B	REV__ENSG00000005249|ENST00000265717|PRKAR2B	MSMS	A375_MHC_IP_R2	2	625.9210205078125	2	625.831723	1249.64889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.138	1	87.871	87.371	88.371	0.733								0	0	0	0.16203	1	33138	33138		8.1555	0.54658	1		+		23038	16118	16740	16857	22597	22597					0.03405415208430895
ITACTGEGCT	10	Unmodified	_ITACTGEGCT_					0	0	0			REV__ENST00000604932.1_1_2:28248124-28248181:+|nuORF	REV__ENST00000604932.1_1_2:28248124-28248181:+|nuORF	MSMS	A375_MHC_IP_R1	1	478.2136535644531	2	478.19661	954.378667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.956	1	45.956	45.456	46.456	0								0	0	0	0.15308	1	16104	16104		10.824	4.4698	1		+		23039	26531	16741	16858	22598	22598					-0.1003468111928214
ITAGAHRLW	9	Unmodified	_ITAGAHRLW_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	A375_MHC_IP_R1	1	513.1875	2	512.787976	1023.5614	-0.73309	-0.00037592	0.22265	0.00011417	-0.51045	-0.00026175	512.7880545827602	39.799	0.40625	39.799	39.592	39.999	0					20	7	3	0	0	0	0.0054362	1	13626	13626		134.3	84.363	1	9275000			23040	2067	16742	16859	22599	22599					0.050560021198293725
ITAGAHRLW	9	Unmodified	_ITAGAHRLW_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	A375_MHC_IP_R2	2	513.1873779296875	2	512.787976	1023.5614	-1.0072	-0.00051649	0.070941	3.6378E-05	-0.93628	-0.00048011	512.78796954682	38.908	0.46116	39.683	39.453	39.914	0.77451					22	8	3	0	0	0	0.0096896	1	14331	14331		110.67	60.742	1	11135000			23041	2067	16742	16859	22600	22600					0.050560021198293725
ITANIICSIV	10	Unmodified	_ITANIICSIV_					0	0	0		ENSG00000197408|ENST00000324071|CYP2B6	ENSG00000197408|ENST00000324071|CYP2B6	ENSG00000197408|ENST00000324071|CYP2B6	MSMS	A375_MHC_IP_R2	2	523.7184448242188	2	523.79936	1045.58417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.46	1	112.19	111.69	112.69	0.73692								0	0	0	0.14673	1	42024	42024		24.021	4.7636	1				23042	9152	16743	16860	22601	22601					0.06319840402420596
ITAPPSRVL	9	Unmodified	_ITAPPSRVL_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	A375_MHC_IP_R1	1	477.6924133300781	2	477.292559	952.570566	-0.42746	-0.00020402	0.098046	4.6797E-05	-0.32942	-0.00015723	477.2925789329613	45.966	1.8268	45.966	45.384	47.211	0					106	35	5	0	0	0	0.024574	1	16206	16206		79.596	18.239	1	74250000			23043	2067	16744	16861	22602	22602					0.09238350685518526
ITAPPSRVL	9	Unmodified	_ITAPPSRVL_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	A375_MHC_IP_R2	2	477.6924133300781	2	477.292559	952.570566	-0.60915	-0.00029074	0.0075105	3.5847E-06	-0.60164	-0.00028716	477.2925210714261	45.356	1.7232	46.121	45.285	47.008	0.76518					96	33	4	0	0	0	0.020087	1	16953	16953		83.429	22.071	1	70817000			23044	2067	16744	16861	22603	22603					0.09238350685518526
ITAQQINKL	9	Unmodified	_ITAQQINKL_					0	0	0		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MULTI-SECPEP	A375_MHC_IP_R1	1	514.1901245117188	2	514.808574	1027.60259	-0.21186	-0.00010907	-0.43638	-0.00022465	-0.64824	-0.00033372	514.8084129227211	44.497	0.25586	44.497	44.267	44.523	0					7	4	2	0	0	0	0.65246	1	15521	15521		10.824	0	1	848390			23045	878	16745	16862	22604	22604					0.0898971836866167
ITARVTVTGW	10	Unmodified	_ITARVTVTGW_					0	0	0		ENST00000456057.5_2_6:41755171-41755237:+|nuORF	ENST00000456057.5_2_6:41755171-41755237:+|nuORF	ENST00000456057.5_2_6:41755171-41755237:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	551.6720581054688	2	552.314023	1102.61349	-0.72666	-0.00040134	0.69211	0.00038226	-0.034545	-1.908E-05	552.3141258632324	67.598	0.61182	68.334	68.205	68.817	0.73631					22	11	2	0	0	0	0.69834	1	25669	25669		23.801	8.5526	1	1917400			23046	12123	16746	16863	22605	22605					0.06629120742968553
ITAVVSISV	9	Unmodified	_ITAVVSISV_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	MULTI-SECPEP	A375_MHC_IP_R1	1	887.8563232421875	1	888.54006	887.532783	-0.43108	-0.00038303	2.0387	0.0018115	1.6077	0.0014285	888.5417496562515	129.63	0.65936	129.63	129.5	130.16	0					27	12	4	0	0	0	0.3607	1	49948	49948		20.454	0	1	124340000			23047	4729	16747	16864	22606	22606					0.08451839700057917
ITCGDPPETF	10	Unmodified	_ITCGDPPETF_					0	0	0		nc|ENSG00000162631|Q9Y2I2-2|NTNG1;ENST00000294649.8_1_1:107691215-107950335:+|nuORF;nc|ENSG00000162631|Q9Y2I2-1|NTNG1;nc|ENSG00000162631|Q9Y2I2-5|NTNG1;nc|ENSG00000162631|Q9Y2I2-4|NTNG1;nc|ENSG00000162631|Q9Y2I2-6|NTNG1;ENSG00000162631|ENST00000370068|NTNG1	nc|ENSG00000162631|Q9Y2I2-2|NTNG1	nc|ENSG00000162631|Q9Y2I2-2|NTNG1	MULTI-SECPEP	A375_MHC_IP_R1	1	539.6962890625	2	540.239332	1078.46411	-0.9378	-0.00050664	-1.5457	-0.00083503	-2.4835	-0.0013417	540.2383769923929	67.169	0.40942	67.169	66.938	67.348	0					10	7	2	0	0	0	0.85226	1	24301	24301		10.074	10.074	1	1763500			23048	6568	16748	16865	22607	22607					-0.07198192661985559
ITCGDPPETF	10	Unmodified	_ITCGDPPETF_					0	0	0		nc|ENSG00000162631|Q9Y2I2-2|NTNG1;ENST00000294649.8_1_1:107691215-107950335:+|nuORF;nc|ENSG00000162631|Q9Y2I2-1|NTNG1;nc|ENSG00000162631|Q9Y2I2-5|NTNG1;nc|ENSG00000162631|Q9Y2I2-4|NTNG1;nc|ENSG00000162631|Q9Y2I2-6|NTNG1;ENSG00000162631|ENST00000370068|NTNG1	nc|ENSG00000162631|Q9Y2I2-2|NTNG1	nc|ENSG00000162631|Q9Y2I2-2|NTNG1	MULTI-MATCH	A375_MHC_IP_R2	2		2	540.239332	1078.46411	-0.97802	-0.00052837	-1.7824	-0.00096295	-2.7605	-0.0014913	540.238418477664	66.457	0.51188	67.193	66.983	67.495	0.73631	0.012118	-7.1912E-05	NaN	10.074	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1468400			23049	6568	16748	16865							-0.07198192661985559
ITCIIWLAF	9	Unmodified	_ITCIIWLAF_					0	0	0		GRM6|p.T791I|1|0.67|ENSG00000113262|chr5:178982974-178982974|G/A|missense_variant	GRM6|p.T791I|1|0.67|ENSG00000113262|chr5:178982974-178982974|G/A|missense_variant	GRM6|p.T791I|1|0.67|ENSG00000113262|chr5:178982974-178982974|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	540.677490234375	2	540.301539	1078.58852	-0.85636	-0.00046269	4.2977	0.0023221	3.4413	0.0018594	540.3027732962753	73.071	0.45921	73.807	73.53	73.99	0.73541					12	8	2	0	0	0	0.75466	1	27804	27804		1.8442	0	1	1023700			23050	14090	16749	16866	22608	22608					0.052373496160271316
ITCLWGGLLY	10	Unmodified	_ITCLWGGLLY_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	570.2027587890625	2	569.801903	1137.58925	-0.49696	-0.00028317	2.1465	0.0012231	1.6495	0.00093989	569.8031085215748	54.747	0.45832	55.498	55.219	55.678	0.75075					13	8	2	0	0	0	0.69172	1	20700	20700		25.399	3.8623	1	2041300			23051	9268	16750	16867	22609	22609					0.02596144265089606
ITDAYLDQY	9	Unmodified	_ITDAYLDQY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R1	1	551.7061157226562	2	551.258579	1100.50261	-0.56745	-0.00031281	0.27938	0.00015401	-0.28807	-0.0001588	551.258919298845	75.784	1.6188	75.784	75.362	76.981	0					55	19	4	0	0	0	0.030038	1	27542	27542		74.929	34.972	1	29731000			23052	7864	16751	16868	22610	22610					-0.043625637557852315
ITDAYLDQY	9	Unmodified	_ITDAYLDQY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	A375_MHC_IP_R2	2	551.2445678710938	2	551.258579	1100.50261	-0.82153	-0.00045288	0.010091	5.5629E-06	-0.81144	-0.00044731	551.2587472398069	75.157	1.4728	75.894	75.467	76.94	0.73752					54	19	4	0	0	0	0.011451	1	28540	28540		118.89	15.146	1	32719000			23053	7864	16751	16868	22611	22611					-0.043625637557852315
ITDDLHFYV	9	Unmodified	_ITDDLHFYV_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-SECPEP	A375_MHC_IP_R1	1	562.1766357421875	2	561.776939	1121.53933	-0.20332	-0.00011422	0.14174	7.9625E-05	-0.061584	-3.4596E-05	561.7768240478327	92.765	0.71124	92.765	92.312	93.023	0					20	13	2	0	0	0	0.23894	1	34097	34097		61.357	46.776	1	1810200			23054	9124	16752	16869	22612	22612					-0.016582671392370685
ITDDLHFYV	9	Unmodified	_ITDDLHFYV_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	A375_MHC_IP_R2	2	562.1766967773438	2	561.776939	1121.53933	-0.50587	-0.00028419	0.69274	0.00038917	0.18687	0.00010498	561.7773059353755	92.02	0.65811	92.759	92.329	92.987	0.73902					20	12	2	0	0	0	0.12592	2	35019	34956;35019		46.021	21.03	1	2226100			23055	9124	16752	16869	22613;22614	22614					-0.016582671392370685
ITDEEEGLIW	10	Unmodified	_ITDEEEGLIW_					0	0	0		nc|ENSG00000153707|P23468-2|PTPRD;nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-7|PTPRD;nc|ENSG00000153707|P23468-5|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-6|PTPRD;ENSG00000153707|ENST00000381196|PTPRD	nc|ENSG00000153707|P23468-2|PTPRD	nc|ENSG00000153707|P23468-2|PTPRD	MULTI-MSMS	A375_MHC_IP_R1	1	603.1898803710938	2	602.790244	1203.56593	-0.1424	-8.5835E-05	-0.16058	-9.6795E-05	-0.30297	-0.00018263	602.7901322525605	54.088	0.45185	54.088	53.912	54.364	0					18	8	3	0	0	0	0.23156	1	19304	19304		46.021	0.32134	1	4335200			23056	14689	16753	16870	22615	22615					-0.027706230385547315
ITDEFVKQKY	10	Unmodified	_ITDEFVKQKY_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2;ENST00000475183.1_1_X:54953428-54957230:+|nuORF;ENST00000492706.5_1_X:54953428-54957450:+|nuORF;nc|ENSG00000067445|Q12816-5|TRO;nc|ENSG00000067445|Q12816-2|TRO;nc|ENSG00000067445|Q12816-3|TRO;nc|ENSG00000067445|Q12816-4|TRO;ENSG00000067445|ENST00000173898|TRO	nc|ENSG00000102316|Q9UNF1-2|MAGED2;nc|ENSG00000067445|Q12816-5|TRO	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	A375_MHC_IP_R1	1	424.6274108886719	3	424.227444	1269.6605	-0.34732	-0.00014734	0.42419	0.00017995	0.076868	3.261E-05	424.2276014165818	36.515	0.40717	36.515	36.287	36.695	0					18	7	3	0	0	0	0.70015	1	12258	12258		12.228	5.9932	1	3999300			23057	2373;1438	16754	16871	22616	22616					0.036459355034367036
ITDEFVKQKY	10	Unmodified	_ITDEFVKQKY_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2;ENST00000475183.1_1_X:54953428-54957230:+|nuORF;ENST00000492706.5_1_X:54953428-54957450:+|nuORF;nc|ENSG00000067445|Q12816-5|TRO;nc|ENSG00000067445|Q12816-2|TRO;nc|ENSG00000067445|Q12816-3|TRO;nc|ENSG00000067445|Q12816-4|TRO;ENSG00000067445|ENST00000173898|TRO	nc|ENSG00000102316|Q9UNF1-2|MAGED2;nc|ENSG00000067445|Q12816-5|TRO	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	A375_MHC_IP_R2	2	424.62744140625	3	424.227444	1269.6605	-0.33836	-0.00014354	0.20177	8.5597E-05	-0.13659	-5.7945E-05	424.2275635604858	35.713	0.40789	36.477	36.333	36.741	0.76338					17	7	4	0	0	0	0.27942	1	12989	12989		41.347	21.36	1	3652700			23058	2373;1438	16754	16871	22617	22617					0.036459355034367036
ITDELGYVC	9	Unmodified	_ITDELGYVC_					0	0	0		ENSG00000111412|ENST00000261318|SPRING1	ENSG00000111412|ENST00000261318|SPRING1	ENSG00000111412|ENST00000261318|SPRING1	MULTI-SECPEP	A375_MHC_IP_R2	2	507.44268798828125	2	506.736425	1011.4583	-1.0779	-0.00054621	2.3007	0.0011658	1.2228	0.00061963	506.7402287784494	58.618	0.55928	59.367	59.083	59.643	0.74894					41	10	6	0	0	0	0.62767	1	22209	22209		23.148	13.801	1	2601600			23059	2992	16755	16872	22618	22618					-0.04697291173636131
ITDEQRQYY	9	Unmodified	_ITDEQRQYY_					0	0	0		REPS1|p.A578Pfs*33|1|0.19|ENSG00000135597|chr6:138914737-138914750|GCAACAACTCCAGC/-|frameshift_variant;nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1	REPS1|p.A578Pfs*33|1|0.19|ENSG00000135597|chr6:138914737-138914750|GCAACAACTCCAGC/-|frameshift_variant	REPS1|p.A578Pfs*33|1|0.19|ENSG00000135597|chr6:138914737-138914750|GCAACAACTCCAGC/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	608.6854858398438	2	608.28566	1214.55677	-0.26552	-0.00016151	-0.51744	-0.00031475	-0.78296	-0.00047626	608.2857725201094	28.516	0.75824	28.516	28.037	28.795	0					20	14	2	0	0	0	0.0020135	1	8813	8813		171.09	117.25	1	9518500			23060	4698	16756	16873	22619	22619					-0.04192971604243212
ITDEQRQYY	9	Unmodified	_ITDEQRQYY_					0	0	0		REPS1|p.A578Pfs*33|1|0.19|ENSG00000135597|chr6:138914737-138914750|GCAACAACTCCAGC/-|frameshift_variant;nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1	REPS1|p.A578Pfs*33|1|0.19|ENSG00000135597|chr6:138914737-138914750|GCAACAACTCCAGC/-|frameshift_variant	REPS1|p.A578Pfs*33|1|0.19|ENSG00000135597|chr6:138914737-138914750|GCAACAACTCCAGC/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	608.684814453125	2	608.28566	1214.55677	-0.50159	-0.00030511	-0.25899	-0.00015754	-0.76058	-0.00046265	608.2855563752374	27.945	0.45692	28.624	28.401	28.858	0.67857					20	8	4	0	0	0	0.00011313	1	9590	9590		208.15	158.21	1	9835600			23061	4698	16756	16873	22620	22620					-0.04192971604243212
ITDETKNPTF	10	Unmodified	_ITDETKNPTF_					0	0	0			REV__ENSG00000229314|ENST00000259396|ORM1	REV__ENSG00000229314|ENST00000259396|ORM1	MULTI-SECPEP	A375_MHC_IP_R2	2	583.663330078125	2	583.290411	1164.56627	-0.56928	-0.00033206	0.43495	0.0002537	-0.13433	-7.8356E-05	583.290673016286	65.634	0.50729	66.373	66.018	66.526	0.73811					13	9	2	0	0	0	0.52461	1	24811	24811		29.082	0	1	1757100	+		23062	22733	16757	16874	22621	22621					-0.009432033187067645
ITDFGKPRIQ	10	Unmodified	_ITDFGKPRIQ_					0	0	0		IL1RL1|p.E263K|1|0.43|ENSG00000115602|chr2:102343140-102343140|G/A|missense_variant	IL1RL1|p.E263K|1|0.43|ENSG00000115602|chr2:102343140-102343140|G/A|missense_variant	IL1RL1|p.E263K|1|0.43|ENSG00000115602|chr2:102343140-102343140|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	392.6238708496094	3	392.224146	1173.65061	-0.28006	-0.00010985	0.20457	8.0238E-05	-0.075489	-2.9609E-05	392.224119763689	39.324	0.76354	40.099	39.812	40.575	0.77451					26	14	3	0	0	0	0.70015	1	14537	14537		12.228	0.70971	1	6389800			23063	14154	16758	16875	22622	22622					0.07072792288704477
ITDFNNIRY	9	Unmodified	_ITDFNNIRY_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2;nc|ENSG00000257743|Q2M2H8-3|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-SECPEP	A375_MHC_IP_R1	1	578.6932373046875	2	578.293288	1154.57202	-0.2128	-0.00012306	-0.2303	-0.00013318	-0.44309	-0.00025624	578.2931380553114	60.879	0.91772	60.879	60.464	61.382	0					44	17	4	0	0	0	0.03109	1	21860	21860		103.35	45.632	1	51606000			23064	9912	16759	16876	22623	22623					0.0009193998362206912
ITDFNNIRY	9	Unmodified	_ITDFNNIRY_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2;nc|ENSG00000257743|Q2M2H8-3|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-SECPEP	A375_MHC_IP_R2	2	578.69287109375	2	578.293288	1154.57202	-0.53367	-0.00030862	1.095	0.00063324	0.56134	0.00032462	578.2930351840034	60.133	1.0158	60.88	60.553	61.569	0.74714					71	19	4	0	0	0	0.011107	1	22708	22708		134.3	55.568	1	60601000			23065	9912	16759	16876	22624	22624					0.0009193998362206912
ITDHGSLIY	9	Unmodified	_ITDHGSLIY_					0	0	0		nc|ENSG00000132109|P19474-2|TRIM21;ENSG00000132109|ENST00000254436|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	MULTI-MSMS	A375_MHC_IP_R1	1	510.4512023925781	2	509.763832	1017.51311	-0.42282	-0.00021554	-0.085103	-4.3382E-05	-0.50793	-0.00025892	509.7637531113464	50.718	1.7286	50.718	50.305	52.034	0					101	33	6	0	0	0	0.022213	1	18004	18004		81.613	33.267	1	147180000			23066	4372	16760	16877	22625	22625					0.005054636892964481
ITDHGSLIY	9	Unmodified	_ITDHGSLIY_					0	0	0		nc|ENSG00000132109|P19474-2|TRIM21;ENSG00000132109|ENST00000254436|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	MULTI-SECPEP	A375_MHC_IP_R2	2	509.67620849609375	2	509.763832	1017.51311	-1.0343	-0.00052724	0.22546	0.00011493	-0.80882	-0.00041231	510.2649460164354	51.723	0.81326	52.475	52.27	53.083	0.75225					23	15	2	0	0	0	0.39388	1	19616	19616		32.305	18.399	1	2811800			23067	4372	16760	16877	22626	22626					0.005054636892964481
ITDHLDTQY	9	Unmodified	_ITDHLDTQY_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-3|ZZEF1;ENST00000574474.1_1_17:3979912-4046255:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-SECPEP	A375_MHC_IP_R1	1	553.6611938476562	2	553.261653	1104.50875	-0.70587	-0.00039053	-1.1225	-0.00062103	-1.8284	-0.0010116	553.2614713767273	39.567	0.50554	39.567	39.289	39.794	0					16	9	2	0	0	0	0.20059	1	13550	13550		65.235	25.278	1	4737100			23068	1592	16761	16878	22627	22627					-0.03932045524265959
ITDHLDTQY	9	Unmodified	_ITDHLDTQY_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-3|ZZEF1;ENST00000574474.1_1_17:3979912-4046255:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	A375_MHC_IP_R2	2	553.6611328125	2	553.261653	1104.50875	-1.0269	-0.00056813	-2.3128	-0.0012796	-3.3396	-0.0018477	553.2614456459403	38.934	0.71581	39.709	39.3	40.016	0.77451					25	13	3	0	0	0	0.047602	1	14357	14357		65.235	32.93	1	3628000			23069	1592	16761	16878	22628	22628					-0.03932045524265959
ITDIDQLGWK	10	Unmodified	_ITDIDQLGWK_					0	0	0			REV__ENSG00000118873|ENST00000358951|RAB3GAP2	REV__ENSG00000118873|ENST00000358951|RAB3GAP2	MSMS	A375_MHC_IP_R2	2	594.9470825195312	2	594.816596	1187.61864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.74	1	109.49	108.99	109.99	0.74684								0	0	0	0.15435	1	41054	41054		6.7232	0	1		+		23070	18054	16762	16879	22629	22629					0.0323337981487839
ITDIELRLL	9	Unmodified	_ITDIELRLL_					0	0	0			REV__ENSG00000170160|ENST00000399273|CCDC144A	REV__ENSG00000170160|ENST00000399273|CCDC144A	MULTI-MSMS	A375_MHC_IP_R1	1	362.95745849609375	3	362.557013	1084.64921	0.70573	0.00025587	0.3772	0.00013676	1.0829	0.00039262	362.5571054989782	44.869	1.9708	44.869	44.575	46.545	0					74	38	4	0	0	0	0.12748	1	15651	15651		45.74	1.758	1	26650000	+		23071	20969	16763	16880	22630	22630					0.11027158199954101
ITDIELRLMA	10	Unmodified	_ITDIELRLMA_					0	0	0			REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	MULTI-SECPEP	A375_MHC_IP_R1	1	587.7273559570312	2	587.828649	1173.64274	-0.39222	-0.00023056	0.77518	0.00045567	0.38296	0.00022512	588.3306181666138	94.151	1.3204	94.151	93.686	95.007	0					34	25	2	0	0	0	0.92227	1	34676	34676		13.042	7.3106	1	2022500	+		23072	27163	16764	16881	22631	22631					0.06286896976916978
ITDIVNKY	8	Unmodified	_ITDIVNKY_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB;ENST00000490114.1_1_20:37202892-37204542:+|nuORF	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-SECPEP	A375_MHC_IP_R1	1	483.6683044433594	2	483.26875	964.522947	-0.52708	-0.00025472	0.23496	0.00011355	-0.29212	-0.00014117	483.26882258419	41.89	0.8662	41.89	41.317	42.183	0					39	16	3	0	0	0	0.24561	1	14457	14457		81.613	17.377	1	13730000			23073	7511	16765	16882	22632	22632					0.03926651694666816
ITDKNSLAY	9	Unmodified	_ITDKNSLAY_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	A375_MHC_IP_R1	1	513.1688232421875	2	512.769114	1023.52368	-0.46129	-0.00023653	-0.032085	-1.6452E-05	-0.49337	-0.00025299	512.7690743085195	31.744	1.4734	31.744	31.465	32.938	0					80	28	5	0	0	0	0.0098085	1	10149	10149		114.2	25.248	1	314290000			23074	6672	16766	16883	22633	22633					0.012854463436951846
ITDKNSLAY	9	Unmodified	_ITDKNSLAY_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	A375_MHC_IP_R2	2	513.1688232421875	2	512.769114	1023.52368	-0.7907	-0.00040545	-0.11935	-6.12E-05	-0.91005	-0.00046665	512.7690664713887	31.119	1.7762	31.837	31.216	32.992	0.71857					110	34	7	0	0	0	0.012447	1	10928	10928		93.166	14.438	1	301660000			23075	6672	16766	16883	22634	22634					0.012854463436951846
ITDLNSDQY	9	Unmodified	_ITDLNSDQY_					0	0	0		nc|ENSG00000156671|Q96LT4-2|SAMD8;ENSG00000156671|ENST00000542569|SAMD8	nc|ENSG00000156671|Q96LT4-2|SAMD8	nc|ENSG00000156671|Q96LT4-2|SAMD8	MULTI-SECPEP	A375_MHC_IP_R2	2	535.14501953125	2	534.745836	1067.47712	-0.65742	-0.00035155	0.61478	0.00032875	-0.042641	-2.2802E-05	534.7453478804532	47.643	0.70935	48.404	48.123	48.833	0.76128					28	13	3	0	0	0	0.4261	1	17891	17891		24.021	20.739	1	4469900			23076	6203	16767	16884	22635	22635					-0.053920382782280285
ITDLPDHLLSY	11	Unmodified	_ITDLPDHLLSY_					0	0	0		ENST00000406829.2_2_7:7812042-7917166:+|nuORF;ENSG00000219545|ENST00000682710|UMAD1	ENST00000406829.2_2_7:7812042-7917166:+|nuORF	ENST00000406829.2_2_7:7812042-7917166:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	643.7498779296875	2	643.834985	1285.65542	-0.70192	-0.00045192	0.41675	0.00026832	-0.28517	-0.0001836	643.8352277037974	96.163	1.2149	96.913	96.602	97.817	0.75045					42	23	3	0	0	0	0.21365	1	36442	36442		53.404	13.165	1	11796000			23077	9661	16768	16885	22636	22636					0.024016316408051352
ITDLPDHLLSY	11	Unmodified	_ITDLPDHLLSY_					0	0	0		ENST00000406829.2_2_7:7812042-7917166:+|nuORF;ENSG00000219545|ENST00000682710|UMAD1	ENST00000406829.2_2_7:7812042-7917166:+|nuORF	ENST00000406829.2_2_7:7812042-7917166:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	643.834985	1285.65542	-0.38569	-0.00024832	0.25818	0.00016622	-0.12751	-8.2094E-05	643.8351544700354	96.934	0.75901	96.934	96.529	97.288	0	0.010482	-0.0001216	NaN	53.404	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10136000			23078	9661	16768	16885							0.024016316408051352
ITDLQKEFY	9	Unmodified	_ITDLQKEFY_					0	0	0		PCLO|p.M3987*|2|0.34|ENSG00000186472|chr7:82916028-82916028|A/-|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO;PCLO|p.T2697Qfs*9|1|0.18|ENSG00000186472|chr7:82952864-82952864|T/-|frameshift_variant;PCLO|p.E2016K|1|0.36|ENSG00000186472|chr7:82954907-82954907|C/T|missense_variant	PCLO|p.M3987*|2|0.34|ENSG00000186472|chr7:82916028-82916028|A/-|frameshift_variant	PCLO|p.M3987*|2|0.34|ENSG00000186472|chr7:82916028-82916028|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	579.4619750976562	2	578.797872	1155.58119	-0.17633	-0.00010206	0.63044	0.0003649	0.45412	0.00026284	578.7982591940619	63.418	1.3706	64.158	63.531	64.902	0.74022					60	26	3	0	0	0	0.042871	1	24082	24082		67.081	23.308	1	5345000			23079	8749	16769	16886	22637	22637					0.009622885492944988
ITDLQKEFY	9	Unmodified	_ITDLQKEFY_					0	0	0		PCLO|p.M3987*|2|0.34|ENSG00000186472|chr7:82916028-82916028|A/-|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO;PCLO|p.T2697Qfs*9|1|0.18|ENSG00000186472|chr7:82952864-82952864|T/-|frameshift_variant;PCLO|p.E2016K|1|0.36|ENSG00000186472|chr7:82954907-82954907|C/T|missense_variant	PCLO|p.M3987*|2|0.34|ENSG00000186472|chr7:82916028-82916028|A/-|frameshift_variant	PCLO|p.M3987*|2|0.34|ENSG00000186472|chr7:82916028-82916028|A/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	578.797872	1155.58119	-0.20201	-0.00011692	1.1843	0.00068545	0.98227	0.00056853	578.7985407991242	64.023	1.6795	64.023	63.326	65.005	0	-0.067934	0.00028497	NaN	67.081	68	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8004500			23080	8749	16769	16886							0.009622885492944988
ITDLSMQSSSR	11	Oxidation (M)	_ITDLSM(Oxidation (M))QSSSR_		ITDLSM(1)QSSSR		ITDLSM(52)QSSSR	0	0	1			REV__ENSG00000111647|ENST00000279907|BLTP3B	REV__ENSG00000111647|ENST00000279907|BLTP3B	MULTI-MSMS	A375_MHC_IP_R1	1	621.1957397460938	2	620.795534	1239.57652	-0.42062	-0.00026112	-0.44892	-0.00027869	-0.86954	-0.00053981	620.7960138676012	57.607	1.3732	57.607	56.804	58.177	0					49	26	3	0	0	0	0.23666	1	20673	20673		51.63	9.7902	1	5129900	+		23081	17682	16770	16887	22638	22638		476			-0.033689636557937774
ITDLSMQSSSR	11	Oxidation (M)	_ITDLSM(Oxidation (M))QSSSR_					0	0	1			REV__ENSG00000111647|ENST00000279907|BLTP3B	REV__ENSG00000111647|ENST00000279907|BLTP3B	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	620.795534	1239.57652	-0.42062	-0.00026112	-0.44892	-0.00027869	-0.86954	-0.00053981	620.7960138676012	57.607	1.3732	57.607	56.804	58.177	0	-0.0244	0.00016069	NaN	51.63	49	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5129900	+		23082	17682	16770	16887				476			-0.033689636557937774
ITDLVDQSI	9	Unmodified	_ITDLVDQSI_					0	0	0		nc|ENSG00000172915|Q8NFP9|NBEA;ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9-2|NBEA;nc|ENSG00000172915|Q8NFP9-3|NBEA	nc|ENSG00000172915|Q8NFP9|NBEA	nc|ENSG00000172915|Q8NFP9|NBEA	MSMS	A375_MHC_IP_R1	1	502.204345703125	2	502.268947	1002.52334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.033	1	97.033	96.533	97.533	0								0	0	0	0.14677	1	35654	35654		26.884	0	1				23083	7745	16771	16888	22639	22639					0.02218026623870628
ITDNEHYV	8	Unmodified	_ITDNEHYV_					0	0	0			REV__ENST00000527586.1_1_11:134109936-134113358:+|nuORF	REV__ENST00000527586.1_1_11:134109936-134113358:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	496.2942810058594	2	495.729989	989.445425	-0.37226	-0.00018454	-0.40981	-0.00020315	-0.78207	-0.00038769	495.72985069498253	91.344	1.1657	92.078	91.211	92.376	0.73451					30	22	2	0	0	0	0.8824	1	34751	34751		23.148	6.2061	1	1897200	+		23084	19758	16772	16889	22640	22640					-0.049719862415145144
ITDNRGNSL	9	Unmodified	_ITDNRGNSL_					0	0	0			REV__nc|ENSG00000111199|Q9HBA0-6|TRPV4	REV__nc|ENSG00000111199|Q9HBA0-6|TRPV4	MSMS	A375_MHC_IP_R2	2	495.16900634765625	2	495.254163	988.493772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.095	1	92.834	92.334	93.334	0.73902								0	0	0	0.14359	1	35025	35025		28.487	1.6032	1		+		23085	17652	16773	16890	22641	22641					-0.0009349260162707651
ITDPDPDIRY	10	Unmodified	_ITDPDPDIRY_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	A375_MHC_IP_R1	1	603.1953125	2	602.79586	1203.57717	-0.34445	-0.00020763	0.26627	0.00016051	-0.078177	-4.7125E-05	602.7958889935593	53.522	0.61036	53.522	53.199	53.809	0					33	11	4	0	0	0	0.011121	1	19049	19049		110.79	66.811	1	14681000			23086	9326	16774	16891	22642	22642					-0.016478009444199415
ITDPDPDIRY	10	Unmodified	_ITDPDPDIRY_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	A375_MHC_IP_R2	2	603.1956176757812	2	602.79586	1203.57717	-1.0006	-0.00060316	0.28067	0.00016919	-0.71994	-0.00043398	602.795865094052	52.895	0.66072	53.646	53.385	54.046	0.75105					20	12	2	0	0	0	0.015903	1	19922	19922		88.364	36.734	1	13796000			23087	9326	16774	16891	22643	22643					-0.016478009444199415
ITDPLDLLENH	11	Unmodified	_ITDPLDLLENH_					0	0	0			REV__ENSG00000108061|ENST00000369452|SHOC2	REV__ENSG00000108061|ENST00000369452|SHOC2	MULTI-SECPEP	A375_MHC_IP_R2	2	426.6893005371094	3	427.22247	1278.64558	-0.054757	-2.3393E-05	0.21503	9.1867E-05	0.16028	6.8474E-05	427.2223835803656	46.516	0.30658	47.281	47.058	47.364	0.76519					9	5	3	0	0	0	0.90584	1	17422	17422		6.6235	2.7775	1	1875400	+		23088	17512	16775	16892	22644	22644					0.01740443635412703
ITDPVTVGV	9	Unmodified	_ITDPVTVGV_					0	0	0			REV__nc|ENSG00000126838|P20742-2|PZP;REV__ENSG00000175899|ENST00000318602|A2M	REV__nc|ENSG00000126838|P20742-2|PZP	MULTI-SECPEP	A375_MHC_IP_R2	2	451.1558532714844	2	450.755475	899.496398	-0.23343	-0.00010522	1.0728	0.00048357	0.83937	0.00037835	450.7561172390977	73.306	0.50874	74.042	73.734	74.243	0.73541					18	9	3	0	0	0	0.55359	1	27861	27861		28.487	1.6032	1	1554900	+		23089	18400;21373	16776	16893	22645	22645					0.042629628033296285
ITDQGIEFY	9	Unmodified	_ITDQGIEFY_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-SECPEP	A375_MHC_IP_R2	2	543.6611938476562	2	543.261122	1084.50769	-0.72484	-0.00039378	0.9682	0.00052599	0.24336	0.00013221	543.2613457083746	91.339	0.86363	92.073	91.666	92.53	0.7345					21	16	3	0	0	0	0.13208	1	34748	34748		57.722	1.5449	1	2550000			23090	5242	16777	16894	22646	22646					-0.031182598931764005
ITDQNSDGY	9	Unmodified	_ITDQNSDGY_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	MULTI-MSMS	A375_MHC_IP_R1	1	506.7038879394531	2	506.714536	1011.41452	-0.58986	-0.00029889	-1.0064	-0.00050997	-1.5963	-0.00080886	506.71376331472123	86.3	0.65761	86.3	85.971	86.629	0					27	12	3	0	0	0	0.68216	1	31557	31557		8.5933	0.68312	1	5329700			23091	2060	16778	16895	22647	22647					-0.09073184346425478
ITDRITLKV	9	Unmodified	_ITDRITLKV_					0	0	0		ENST00000605920.1_1_10:81587139-81587235:+|nuORF	ENST00000605920.1_1_10:81587139-81587235:+|nuORF	ENST00000605920.1_1_10:81587139-81587235:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	353.95697021484375	3	353.557125	1057.64954	0.06602	2.3342E-05	-0.051748	-1.8296E-05	0.014272	5.0459E-06	353.5570229090705	45.916	0.45708	45.916	45.687	46.144	0					13	8	2	0	0	0	0.56584	1	16103	16103		16.566	2.951	1	2283500			23092	13909	16779	16896	22648	22648					0.12302577919808755
ITDSAGHILY	10	Unmodified	_ITDSAGHILY_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	A375_MHC_IP_R1	1	545.6819458007812	2	545.282389	1088.55022	-0.73212	-0.00039921	0.096147	5.2427E-05	-0.63597	-0.00034678	545.2824051681405	52.971	0.76005	52.971	52.643	53.403	0					34	14	3	0	0	0	2.5941E-05	1	18825	18825		156.16	78.006	1	59718000			23093	7497	16780	16897	22649	22649					0.009491352350551097
ITDSAGHILY	10	Unmodified	_ITDSAGHILY_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	A375_MHC_IP_R2	2	545.7418212890625	2	545.282389	1088.55022	-1.1759	-0.00064117	-0.9749	-0.00053159	-2.1508	-0.0011728	545.2824223062313	52.197	0.71031	52.949	52.574	53.285	0.75225					53	13	6	0	0	0	2.5941E-05	2	19683	19652;19683		180.01	108.88	1	51240000			23094	7497	16780	16897	22650;22651	22651					0.009491352350551097
ITDSFNATY	9	Unmodified	_ITDSFNATY_					0	0	0		CPSF2|p.L682Vfs*4|1|0.2|ENSG00000165934|chr14:92159204-92159205|TC/-|frameshift_variant;ENSG00000165934|ENST00000298875|CPSF2	CPSF2|p.L682Vfs*4|1|0.2|ENSG00000165934|chr14:92159204-92159205|TC/-|frameshift_variant	CPSF2|p.L682Vfs*4|1|0.2|ENSG00000165934|chr14:92159204-92159205|TC/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	1032.232666015625	1	1031.46802	1030.46074	0.10862	0.00011204	-0.27527	-0.00028394	-0.16665	-0.0001719	1031.46765109548	64.807	0.45902	64.807	64.495	64.954	0					15	8	2	0	0	0	0.0092471	1	23438	23438		103.35	38.118	1	2422500			23095	651	16781	16898	22652	22652					-0.053271194443368586
ITDSFNATY	9	Unmodified	_ITDSFNATY_					0	0	0		CPSF2|p.L682Vfs*4|1|0.2|ENSG00000165934|chr14:92159204-92159205|TC/-|frameshift_variant;ENSG00000165934|ENST00000298875|CPSF2	CPSF2|p.L682Vfs*4|1|0.2|ENSG00000165934|chr14:92159204-92159205|TC/-|frameshift_variant	CPSF2|p.L682Vfs*4|1|0.2|ENSG00000165934|chr14:92159204-92159205|TC/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		1	1031.46802	1030.46074	0.11695	0.00012063	-0.22718	-0.00023433	-0.11023	-0.0001137	1031.467608601063	64.136	0.50816	64.876	64.597	65.106	0.74022	0.034342	1.8163E-05	NaN	103.35	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2188700			23096	651	16781	16898							-0.053271194443368586
ITDTAQTIY	9	Unmodified	_ITDTAQTIY_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-MSMS	A375_MHC_IP_R1	1	513.6605224609375	2	513.261122	1024.50769	-0.44747	-0.00022967	-0.17163	-8.8093E-05	-0.6191	-0.00031776	513.2609615059066	36.092	1.0699	36.092	35.522	36.592	0					54	20	3	0	0	0	0.12771	1	12178	12178		45.7	9.1934	1	12908000			23097	1419	16782	16899	22653	22653					-0.003582598931643588
ITDTETMVG	9	Unmodified	_ITDTETMVG_					0	0	0		nc|ENSG00000163904|Q9HC62-2|SENP2;ENSG00000163904|ENST00000296257|SENP2;ENST00000476011.1_1_3:185330354-185331220:+|nuORF;ENST00000473760.5_1_3:185316772-185331220:+|nuORF	nc|ENSG00000163904|Q9HC62-2|SENP2	nc|ENSG00000163904|Q9HC62-2|SENP2	MSMS	A375_MHC_IP_R1	1	483.6683044433594	2	483.726058	965.437562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.814	1	41.814	41.314	42.314	0								0	0	0	0.14905	1	14457	14457		23.148	1.4018	1				23098	6742	16783	16900	22654	22654					-0.04653881553292649
ITDTFFYSY	9	Unmodified	_ITDTFFYSY_					0	0	0		ENSG00000158113|ENST00000339777|LRRC43;LRRC43|p.L280Qfs*18|1|0.1|ENSG00000158113|chr12:122190305-122190306|-/AACTACTAGAAAAAAATTTGGCGGT|frameshift_variant	ENSG00000158113|ENST00000339777|LRRC43	ENSG00000158113|ENST00000339777|LRRC43	MSMS	A375_MHC_IP_R1	1	578.6630859375	2	578.763497	1155.51244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.171	1	83.171	82.671	83.671	0								0	0	0	0.15486	1	30428	30428		12.532	0	1				23099	6287	16784	16901	22655	22655					-0.05909375750434265
ITDTLMFID	9	Unmodified	_ITDTLMFID_					0	0	0			REV__tr|U7SUJ0|U7SUJ0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01184PE=4SV=1	REV__tr|U7SUJ0|U7SUJ0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01184PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1866455078125	2	534.767726	1067.5209	-0.72651	-0.00038851	-0.85885	-0.00045928	-1.5854	-0.0008478	535.2682844558635	109.18	0.51112	109.93	109.57	110.08	0.74684					15	9	2	0	0	0	0.65246	1	41099	41099		15.847	0	1	648460	+		23100	28562	16785	16902	22656	22656					-0.010161451054500503
ITDTTRDVY	9	Unmodified	_ITDTTRDVY_					0	0	0		ENSG00000161904|ENST00000293760|LEMD2	ENSG00000161904|ENST00000293760|LEMD2	ENSG00000161904|ENST00000293760|LEMD2	MULTI-MSMS	A375_MHC_IP_R1	1	542.6683349609375	2	542.269478	1082.5244	-0.88525	-0.00048005	-0.71077	-0.00038543	-1.596	-0.00086547	542.2688513387376	29.033	0.4059	29.033	28.795	29.201	0					14	7	3	0	0	0	0.12748	1	9058	9058		45.74	11.338	1	3927500			23101	6490	16786	16903	22657	22657					-0.013557590072423409
ITDTTRDVY	9	Unmodified	_ITDTTRDVY_					0	0	0		ENSG00000161904|ENST00000293760|LEMD2	ENSG00000161904|ENST00000293760|LEMD2	ENSG00000161904|ENST00000293760|LEMD2	MULTI-MSMS	A375_MHC_IP_R2	2	542.668701171875	2	542.269478	1082.5244	-1.2449	-0.00067508	-0.48009	-0.00026034	-1.725	-0.00093542	542.269092287916	28.423	0.4567	29.102	28.757	29.214	0.67857					14	8	3	0	0	0	0.032333	1	9849	9849		72.968	31.012	1	3136600			23102	6490	16786	16903	22658	22658					-0.013557590072423409
ITDVDNGYY	9	Unmodified	_ITDVDNGYY_					0	0	0		ENST00000478385.5_1_20:62340364-62366220:+|nuORF;ENST00000477340.5_1_20:62339420-62365174:+|nuORF;nc|ENSG00000197114|Q8N5A5-3|ZGPAT;ENSG00000197114|ENST00000355969|ZGPAT;nc|ENSG00000197114|Q8N5A5|ZGPAT	ENST00000478385.5_1_20:62340364-62366220:+|nuORF	ENST00000478385.5_1_20:62340364-62366220:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	530.6347045898438	2	530.235104	1058.45566	-0.58861	-0.0003121	-0.22993	-0.00012192	-0.81854	-0.00043402	530.2348827223724	54.956	1.1712	54.956	54.567	55.738	0					42	22	3	0	0	0	0.030038	1	19584	19584		74.929	20.155	1	13473000			23103	9116	16787	16904	22659	22659					-0.0712342330696174
ITDVDNGYY	9	Unmodified	_ITDVDNGYY_					0	0	0		ENST00000478385.5_1_20:62340364-62366220:+|nuORF;ENST00000477340.5_1_20:62339420-62365174:+|nuORF;nc|ENSG00000197114|Q8N5A5-3|ZGPAT;ENSG00000197114|ENST00000355969|ZGPAT;nc|ENSG00000197114|Q8N5A5|ZGPAT	ENST00000478385.5_1_20:62340364-62366220:+|nuORF	ENST00000478385.5_1_20:62340364-62366220:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	530.343994140625	2	530.235104	1058.45566	-0.84298	-0.00044697	-0.40216	-0.00021324	-1.2451	-0.00066022	530.2348346898596	54.378	0.91429	55.129	54.763	55.678	0.75075					39	17	3	0	0	0	0.11436	1	20512	20512		68.081	23.674	1	14629000			23104	9116	16787	16904	22660	22660					-0.0712342330696174
ITDVGPGNY	9	Unmodified	_ITDVGPGNY_					0	0	0		ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	MULTI-SECPEP	A375_MHC_IP_R2	2	467.9769287109375	2	468.227082	934.439611	-0.54967	-0.00025737	-0.28138	-0.00013175	-0.83105	-0.00038912	468.2268510734799	48.203	0.4507	48.96	48.729	49.18	0.75736					11	8	2	0	0	0	0.53748	1	18083	18083		8.7454	0.83525	1	1265400			23105	4962	16788	16905	22661	22661					-0.030230847531925065
ITDVLKKQF	9	Unmodified	_ITDVLKKQF_					0	0	0			REV__ENSG00000162654|ENST00000355754|GBP4	REV__ENSG00000162654|ENST00000355754|GBP4	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6795043945312	2	546.326599	1090.63865	-0.67297	-0.00036766	0.034246	1.871E-05	-0.63872	-0.00034895	546.326437281733	65.764	0.40634	65.764	65.565	65.972	0					9	7	2	0	0	0	0.7911	1	23869	23869		3.9444	3.9444	1	801730	+		23106	20286	16789	16906	22662	22662					0.09695175545516577
ITDWFNSI	8	Unmodified	_ITDWFNSI_					0	0	0			REV__ENST00000271843.8_1_1:153946752-153946992:-|nuORF	REV__ENST00000271843.8_1_1:153946752-153946992:-|nuORF	MSMS	A375_MHC_IP_R1	1	498.1340026855469	2	498.245275	994.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.22	1	108.22	107.72	108.72	0								0	0	0	0.16876	1	39701	39701		14.582	2.0501	1		+		23107	23276	16790	16907	22663	22663					-0.02146207856469573
ITDYVDQQFE	10	Unmodified	_ITDYVDQQFE_					0	0	0		nc|ENSG00000284874|Q99719-2|SEPTIN5;ENSG00000184702|ENST00000455784|SEPTIN5	nc|ENSG00000284874|Q99719-2|SEPTIN5	nc|ENSG00000284874|Q99719-2|SEPTIN5	MULTI-SECPEP	A375_MHC_IP_R1	1	628.6759643554688	2	629.285325	1256.5561	-0.50393	-0.00031711	-0.46363	-0.00029175	-0.96755	-0.00060887	629.2847735058368	72.622	0.50803	72.622	72.372	72.88	0					21	9	3	0	0	0	0.79457	1	26452	26452		20.415	13.313	1	2368000			23108	8604	16791	16908	22664	22664					-0.061918110439592056
ITEDEFIAST	10	Unmodified	_ITEDEFIAST_					0	0	0			REV__FMO3|p.G316E|1|0.17|ENSG00000007933|chr1:171114126-171114126|G/A|missense_variant	REV__FMO3|p.G316E|1|0.17|ENSG00000007933|chr1:171114126-171114126|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	563.6688232421875	2	563.269144	1124.52373	-0.65926	-0.00037134	0.32519	0.00018317	-0.33408	-0.00018817	563.2689988835001	36.053	0.45998	36.817	36.537	36.997	0.76338					19	8	3	0	0	0	0.61429	1	13137	13137		30.637	0	1	4518500	+		23109	26641	16792	16909	22665	22665					-0.03354598446935597
ITEDGTLLYTM	11	Unmodified	_ITEDGTLLYTM_					0	0	0		GABRA1|p.L429Afs*7|1|0.08|ENSG00000022355|chr5:161897329-161897330|-/T|frameshift_variant;ENSG00000022355|ENST00000393943|GABRA1	GABRA1|p.L429Afs*7|1|0.08|ENSG00000022355|chr5:161897329-161897330|-/T|frameshift_variant	GABRA1|p.L429Afs*7|1|0.08|ENSG00000022355|chr5:161897329-161897330|-/T|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	629.2057495117188	2	628.807579	1255.60061	-0.61039	-0.00038382	0.0043831	2.7561E-06	-0.606	-0.00038106	628.8061770466013	74.27	1.3198	74.27	73.74	75.06	0					28	25	2	0	0	0	0.72565	1	27087	27087		13.042	2.2185	1	1436800			23110	1068	16793	16910	22666	22666					-0.016971232221067112
ITEDKTELY	9	Unmodified	_ITEDKTELY_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	A375_MHC_IP_R1	1	556.6795654296875	2	556.279512	1110.54447	-0.81211	-0.00045176	0.27896	0.00015518	-0.53315	-0.00029658	556.2795724956877	36.804	0.81135	36.804	36.489	37.301	0					43	15	5	0	0	0	0.0083527	1	12292	12292		128.93	39.979	1	52308000			23111	7831	16794	16911	22667	22667					-0.006380080672670374
ITEDKTELY	9	Unmodified	_ITEDKTELY_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	A375_MHC_IP_R2	2	556.67919921875	2	556.279512	1110.54447	-0.90382	-0.00050277	0.25801	0.00014353	-0.6458	-0.00035925	556.279560974744	36.053	0.76488	36.817	36.435	37.2	0.76338					43	14	5	0	0	0	0.010931	1	13045	13045		148.27	59.314	1	89197000			23112	7831	16794	16911	22668	22668					-0.006380080672670374
ITEDNEYNKY	10	Unmodified	_ITEDNEYNKY_					0	0	0		tr|U7T3X9|U7T3X9_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00298PE=3SV=1	tr|U7T3X9|U7T3X9_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00298PE=3SV=1	tr|U7T3X9|U7T3X9_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00298PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	645.1875	2	644.788232	1287.56191	-0.66775	-0.00043056	0.2641	0.00017029	-0.40364	-0.00026026	644.7874205003111	67.54	0.56021	68.277	68.001	68.562	0.73631					24	10	3	0	0	0	0.92227	1	25621	25621		8.7454	0	1	3077300			23113	29988	16795	16912	22669	22669					-0.07036712532294587
ITEEEKKGKN	10	Unmodified	_ITEEEKKGKN_					0	0	0			REV__ENSG00000139182|ENST00000266546|CLSTN3	REV__ENSG00000139182|ENST00000266546|CLSTN3	MSMS	A375_MHC_IP_R2	2	588.3798828125	2	588.31696	1174.61937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.21	1	111.94	111.44	112.44	0.73692								0	0	0	0.14925	1	41935	41935		19.257	1.1106	1		+		23114	19140	16796	16913	22670	22670					0.03904174463968957
ITEEPVEW	8	Unmodified	_ITEEPVEW_					0	0	0		ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	501.2051086425781	2	501.742565	1001.47058	-0.53146	-0.00026666	3.2054	0.0016083	2.674	0.0013416	501.7440975492324	69.728	0.25604	70.462	70.386	70.642	0.73421					5	4	2	0	0	0	0.97144	1	26425	26425		5.2307	0	1	594400			23115	7188	16797	16914	22671	22671					-0.030099314389531173
ITEGILIFR	9	Unmodified	_ITEGILIFR_					0	0	0			REV__PTGS1|p.L333F|1|0.43|ENSG00000095303|chr9:122383743-122383743|C/T|missense_variant	REV__PTGS1|p.L333F|1|0.43|ENSG00000095303|chr9:122383743-122383743|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	355.2611389160156	3	354.54997	1060.62808	-0.15272	-5.4147E-05	0.054764	1.9417E-05	-0.097955	-3.473E-05	354.5499724029067	46.634	0.96729	46.634	46.295	47.263	0					26	18	2	0	0	0	0.81254	1	16356	16356		0.23584	0	1	906380	+		23116	27857	16798	16915	22672	22672					0.10019192891104467
ITEKELFNP	9	Unmodified	_ITEKELFNP_					0	0	0			REV__ENST00000442588.5_1_1:198126217-198201687:+|nuORF	REV__ENST00000442588.5_1_1:198126217-198201687:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	546.2486572265625	2	545.792589	1089.57063	-0.69155	-0.00037744	0.038525	2.1027E-05	-0.65302	-0.00035642	545.7918955188682	84.096	0.30399	84.096	83.937	84.241	0					7	5	2	0	0	0	0.74169	1	30799	30799		3.9444	0	1	895570	+		23117	24818	16799	16916	22673	22673					0.029423058948623293
ITEKEVKLK	9	Unmodified	_ITEKEVKLK_					0	0	0		ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;ENST00000468150.1_1_9:138757111-138773499:-|nuORF;ENST00000460094.1_1_9:138758268-138774700:-|nuORF;ENST00000312405.10_1_9:138742295-138774724:-|nuORF	ENSG00000130559|ENST00000389532|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	MULTI-MSMS	A375_MHC_IP_R2	2	363.6286315917969	3	363.228897	1086.66486	-0.37099	-0.00013476	-0.22638	-8.2229E-05	-0.59738	-0.00021698	363.2288250155213	19.408	1.2613	20.012	19.483	20.745	0.60308					82	24	6	0	0	0	0.41856	1	6099	6099		23.801	1.143	1	240770000			23118	4255	16800	16917	22674	22674					0.12499444716991093
ITEKEVKLK	9	Unmodified	_ITEKEVKLK_					0	0	0		ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;ENST00000468150.1_1_9:138757111-138773499:-|nuORF;ENST00000460094.1_1_9:138758268-138774700:-|nuORF;ENST00000312405.10_1_9:138742295-138774724:-|nuORF	ENSG00000130559|ENST00000389532|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	MULTI-MSMS	A375_MHC_IP_R2	2	363.26104736328125	3	363.228897	1086.66486	-0.43294	-0.00015726	-0.22764	-8.2684E-05	-0.66058	-0.00023994	363.22886291252655	22.406	1.5316	23.025	22.285	23.817	0.61932					43	29	2	0	0	0	0.58268	1	7252	7252		15.739	2.866	1	29921000			23119	4255	16800	16917	22675	22675					0.12499444716991093
ITEKLSKDK	9	Unmodified	_ITEKLSKDK_					0	0	0		tr|U7T0G4|U7T0G4_FUSNUGlycine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glySPE=3SV=1	tr|U7T0G4|U7T0G4_FUSNUGlycine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glySPE=3SV=1	tr|U7T0G4|U7T0G4_FUSNUGlycine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glySPE=3SV=1	MSMS	A375_MHC_IP_R2	2	531.7188720703125	2	531.313689	1060.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.21	1	140.26	139.76	140.76	0.050156								0	0	0	0.15486	1	54896	54896		7.2892	1.0834	1				23120	29881	16801	16918	22676	22676					0.0849428130322849
ITEKVPSSWA	10	Unmodified	_ITEKVPSSWA_					0	0	0		tr|U7T0S8|U7T0S8_FUSNUCitratetransporter-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00632PE=3SV=1	tr|U7T0S8|U7T0S8_FUSNUCitratetransporter-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00632PE=3SV=1	tr|U7T0S8|U7T0S8_FUSNUCitratetransporter-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00632PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	372.9294128417969	3	373.201118	1116.58152	0.31099	0.00011606	0.91003	0.00033962	1.221	0.00045568	373.2015669947089	34.745	1.268	34.745	33.95	35.218	0					35	24	3	0	0	0	0.60608	1	11482	11482		13.519	2.0008	1	7523900			23121	29888	16802	16919	22677	22677					0.027897082691424657
ITEKVVQAV	9	Unmodified	_ITEKVVQAV_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;HECTD4|p.T2131Nfs*17|1|0.26|ENSG00000173064|chr12:112228151-112228152|-/G|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;ENST00000547519.1_1_12:112664623-112666579:-|nuORF	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-SECPEP	A375_MHC_IP_R2	2	494.197509765625	2	493.797675	985.580796	-0.66339	-0.00032758	0.64278	0.0003174	-0.020612	-1.0178E-05	493.7982638365141	65.561	0.7126	66.299	66.069	66.782	0.73811					26	13	3	0	0	0	0.14422	1	24847	24847		52.268	0	1	5625800			23122	7762	16803	16920	22678	22678					0.08742913620096715
ITELCRDMF	9	Unmodified	_ITELCRDMF_					0	0	0		ENSG00000196072|ENST00000370372|BLOC1S2	ENSG00000196072|ENST00000370372|BLOC1S2	ENSG00000196072|ENST00000370372|BLOC1S2	MULTI-SECPEP	A375_MHC_IP_R1	1	564.3148803710938	2	564.264827	1126.5151	-0.37149	-0.00020962	0.53487	0.00030181	0.16338	9.2188E-05	564.2665904761581	104.62	0.76133	104.62	104.13	104.89	0					40	14	4	0	0	0	0.58271	1	38241	38241		10.074	5.7447	1	3050800			23123	8988	16804	16921	22679	22679					-0.04309566888764493
ITELPEDGCT	10	Unmodified	_ITELPEDGCT_					0	0	0		nc|ENSG00000075292|Q14966-2|ZNF638;nc|ENSG00000075292|Q14966-6|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638	nc|ENSG00000075292|Q14966-2|ZNF638	nc|ENSG00000075292|Q14966-2|ZNF638	MULTI-MSMS	A375_MHC_IP_R2	2	539.6421508789062	2	539.242072	1076.46959	-0.75386	-0.00040651	0.3481	0.00018771	-0.40576	-0.0002188	539.2425203624666	101.3	0.91794	102.06	101.6	102.51	0.76428					36	17	3	0	0	0	0.53946	1	38408	38408		25.399	0	1	3205000			23124	1606	16805	16922	22680	22680					-0.06558513870163551
ITELPEDGCT	10	Unmodified	_ITELPEDGCT_					0	0	0		nc|ENSG00000075292|Q14966-2|ZNF638;nc|ENSG00000075292|Q14966-6|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638	nc|ENSG00000075292|Q14966-2|ZNF638	nc|ENSG00000075292|Q14966-2|ZNF638	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	539.242072	1076.46959	-0.75386	-0.00040651	0.3481	0.00018771	-0.40576	-0.0002188	539.2425203624666	101.3	0.91794	102.06	101.6	102.51	0.76428	-0.0065882	0.00011901	NaN	25.399	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3205000			23125	1606	16805	16922							-0.06558513870163551
ITELVVRKLN	10	Unmodified	_ITELVVRKLN_					0	0	0			REV__tr|U7SYB5|U7SYB5_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accAPE=3SV=1	REV__tr|U7SYB5|U7SYB5_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	593.2717895507812	2	592.871705	1183.72886	-0.24524	-0.0001454	-0.3393	-0.00020116	-0.58454	-0.00034656	592.871821037588	70.446	0.36	70.446	70.237	70.597	0					12	6	3	0	0	0	0.91909	1	25591	25591		9.3831	4.0862	1	1670800	+		23126	28626	16806	16923	22681	22681					0.1443422487393491
ITELVVRKLN	10	Unmodified	_ITELVVRKLN_					0	0	0			REV__tr|U7SYB5|U7SYB5_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accAPE=3SV=1	REV__tr|U7SYB5|U7SYB5_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accAPE=3SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	592.871705	1183.72886	-0.48017	-0.00028468	0.022303	1.3223E-05	-0.45787	-0.00027146	592.8714916481858	69.626	0.30524	70.36	70.132	70.437	0.73421	-0.043162	5.4153E-05	NaN	9.3831	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1459200	+		23127	28626	16806	16923							0.1443422487393491
ITEMEPSPV	9	Unmodified	_ITEMEPSPV_					0	0	0		ENSG00000205108|ENST00000378788|FAM205A;nc|ENSG00000257198|Q63HN1|SPATA31F2P	ENSG00000205108|ENST00000378788|FAM205A	ENSG00000205108|ENST00000378788|FAM205A	MSMS	A375_MHC_IP_R1	1	501.6608581542969	2	501.74425	1001.47395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.102	1	68.102	67.602	68.602	0								0	0	0	0.14905	1	24685	24685		23.148	1.4018	1				23128	9497	16807	16924	22682	22682					-0.026730046565944576
ITENFFLDNGI	11	Unmodified	_ITENFFLDNGI_					0	0	0		tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1	tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1	tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	428.17645263671875	3	428.215316	1281.62412	-0.31685	-0.00013568	0.039304	1.6831E-05	-0.27755	-0.00011885	428.5502812948519	55.208	0.9155	55.959	55.473	56.388	0.75075					53	17	4	0	0	0	0.73472	1	20996	20996		4.4062	0.21665	1	8481800			23129	29767	16808	16925	22683	22683					-0.00542941393291585
ITENKELKY	9	Unmodified	_ITENKELKY_					0	0	0		tr|U7SI12|U7SI12_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02189PE=4SV=1	tr|U7SI12|U7SI12_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02189PE=4SV=1	tr|U7SI12|U7SI12_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02189PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	380.2765808105469	3	379.876523	1136.60774	0.18991	7.2142E-05	-0.11074	-4.2068E-05	0.07917	3.0075E-05	379.87648902821405	32.964	1.2657	32.964	32.684	33.95	0					75	24	5	0	0	0	0.60982	1	10913	10913		14.405	4.6411	1	342410000			23130	29428	16809	16926	22684	22684					0.044899774406076176
ITENKELKY	9	Unmodified	_ITENKELKY_					0	0	0		tr|U7SI12|U7SI12_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02189PE=4SV=1	tr|U7SI12|U7SI12_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02189PE=4SV=1	tr|U7SI12|U7SI12_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02189PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	380.2538757324219	3	379.876523	1136.60774	0.019671	7.4726E-06	0.0319	1.2118E-05	0.051571	1.9591E-05	379.87653267237243	32.198	1.5771	32.935	32.654	34.232	0.73692					75	30	5	0	0	0	0.54799	1	11361	11361		17.443	3.0373	1	365850000			23131	29428	16809	16926	22685	22685					0.044899774406076176
ITENNSGQLNY	11	Unmodified	_ITENNSGQLNY_					0	0	0		ENST00000342820.10_1_4:79841695-79843397:-|nuORF	ENST00000342820.10_1_4:79841695-79843397:-|nuORF	ENST00000342820.10_1_4:79841695-79843397:-|nuORF	MSMS	A375_MHC_IP_R2	2	626.7378540039062	2	626.793849	1251.57314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.654	1	69.389	68.889	69.889	0.73511								0	0	0	0.15488	1	26015	26015		17.443	5.9479	1				23132	10882	16810	16927	22686	22686					-0.04257890438134382
ITENSSFLHAA	11	Unmodified	_ITENSSFLHAA_					0	0	0			REV__ENSG00000156920|ENST00000394143|ADGRG4	REV__ENSG00000156920|ENST00000394143|ADGRG4	MULTI-MSMS	A375_MHC_IP_R2	2	397.5997314453125	3	397.199777	1188.5775	-0.16867	-6.6997E-05	-0.16878	-6.704E-05	-0.33746	-0.00013404	397.19964356519404	74.839	0.45622	75.577	75.315	75.772	0.73751					14	8	2	0	0	0	0.72649	1	28379	28379		6.6235	1.2207	1	1962300	+		23133	20000	16811	16928	22687	22687					-0.009243812245586014
ITEPLPQNL	9	Unmodified	_ITEPLPQNL_					0	0	0			REV__nc|ENSG00000149452|Q8TCC7-5|SLC22A8	REV__nc|ENSG00000149452|Q8TCC7-5|SLC22A8	MULTI-SECPEP	A375_MHC_IP_R1	1	513.393310546875	2	512.787307	1023.56006	-0.43379	-0.00022244	-0.90795	-0.00046559	-1.3417	-0.00068803	512.7878029678508	77.768	0.15367	77.768	77.69	77.844	0					4	2	2	0	0	0	0.65246	1	28374	28374		15.847	5.0233	1	411950	+		23134	19680	16812	16929	22688	22688					0.04922323240418791
ITEQGTQGWDS	11	Unmodified	_ITEQGTQGWDS_					0	0	0		DCLRE1C|p.S548T|1|0.49|ENSG00000152457|chr10:14908844-14908844|C/G|missense_variant	DCLRE1C|p.S548T|1|0.49|ENSG00000152457|chr10:14908844-14908844|C/G|missense_variant	DCLRE1C|p.S548T|1|0.49|ENSG00000152457|chr10:14908844-14908844|C/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	610.6588134765625	2	611.272749	1220.53095	-0.77297	-0.0004725	-0.72647	-0.00044407	-1.4994	-0.00091657	611.271662013718	41.048	0.30499	41.823	41.641	41.946	0.77451					7	5	2	0	0	0	0.88813	1	15217	15217		19.362	4.1135	1	1062300			23135	718	16813	16930	22689	22689					-0.07049865846488501
ITEQPRLS	8	Unmodified	_ITEQPRLS_					0	0	0		ENSG00000116885|ENST00000235532|OSCP1;nc|ENSG00000116885|Q8WVF1|OSCP1;ENST00000471369.1_1_1:36883742-36884717:-|nuORF	ENSG00000116885|ENST00000235532|OSCP1	ENSG00000116885|ENST00000235532|OSCP1	MULTI-MSMS	A375_MHC_IP_R2	2	472.6746520996094	2	472.263999	942.513445	-0.87617	-0.00041379	0.50431	0.00023817	-0.37187	-0.00017562	472.2642852931475	60.898	0.8082	61.643	61.364	62.172	0.74503					34	15	3	0	0	0	0.75805	1	23215	23215		18.135	3.2967	1	21475000			23136	3441	16814	16931	22690	22690					0.03988883409135724
ITERKLGLF	9	Unmodified	_ITERKLGLF_					0	0	0			REV__tr|U7SSI3|U7SSI3_FUSNUDUF3100domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01460PE=4SV=1	REV__tr|U7SSI3|U7SSI3_FUSNUDUF3100domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01460PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	359.9532775878906	3	359.553603	1075.63898	-0.45433	-0.00016336	-0.27646	-9.9403E-05	-0.73079	-0.00026276	359.5534059182021	72.018	0.45583	72.752	72.465	72.921	0.73421					19	8	3	0	0	0	0.52905	1	27310	27310		18.373	0.50992	1	2620300	+		23137	28431	16815	16932	22691	22691					0.1041859526535518
ITESTLILDY	10	Unmodified	_ITESTLILDY_					0	0	0			REV__ENSG00000171806|ENST00000310392|METTL18	REV__ENSG00000171806|ENST00000310392|METTL18	MULTI-SECPEP	A375_MHC_IP_R1	1	584.2080688476562	2	584.310812	1166.60707	-0.44821	-0.0002619	-1.5125	-0.00088378	-1.9607	-0.0011457	584.3097905021149	85.235	0.81586	85.235	84.749	85.565	0					22	15	2	0	0	0	0.91556	1	31190	31190		6.2058	0	1	2874200	+		23138	21097	16816	16933	22692	22692					0.03043138000930412
ITETTHVLSAQ	11	Unmodified	_ITETTHVLSAQ_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	A375_MHC_IP_R2	2	600.7163696289062	2	600.31696	1198.61937	-0.67078	-0.00040268	-0.093761	-5.6286E-05	-0.76454	-0.00045897	600.3170513208987	65.572	0.66151	66.31	66.018	66.68	0.73811					25	12	3	0	0	0	0.97182	1	24826	24826		9.544	9.544	1	7257500	+		23139	22046	16817	16934	22693	22693					0.028001744639595927
ITEVQQKRW	9	Unmodified	_ITEVQQKRW_					0	0	0		ENSG00000130713|ENST00000372358|EXOSC2;ENST00000463488.1_1_9:133569202-133574940:+|nuORF;nc|ENSG00000130713|Q13868-2|EXOSC2	ENSG00000130713|ENST00000372358|EXOSC2	ENSG00000130713|ENST00000372358|EXOSC2	MULTI-MSMS	A375_MHC_IP_R2	2	396.9559631347656	3	396.555895	1186.64586	-0.40219	-0.00015949	0.38255	0.0001517	-0.019645	-7.7903E-06	396.55609871973684	24.238	0.25396	24.882	24.755	25.009	0.64368					7	4	2	0	0	0	0.41879	1	7972	7972		23.79	8.5413	1	4764700			23140	4269	16818	16935	22694	22694					0.05999908145963673
ITEYMEHVY	9	Oxidation (M)	_ITEYM(Oxidation (M))EHVY_		ITEYM(1)EHVY		ITEYM(74)EHVY	0	0	1		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MULTI-MSMS	A375_MHC_IP_R1	1	601.16552734375	2	600.765714	1199.51688	-0.6785	-0.00040762	0.67184	0.00040362	-0.0066511	-3.9958E-06	600.7660528266821	38.353	0.35796	38.353	38.168	38.526	0					14	6	3	0	0	0	0.03063	1	13041	13041		74.423	40.021	1	3363400			23141	4265	16819	16936	22695	22695		219			-0.07490234599163159
ITEYMEHVY	9	Oxidation (M)	_ITEYM(Oxidation (M))EHVY_		ITEYM(1)EHVY		ITEYM(93)EHVY	0	0	1		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MULTI-MSMS	A375_MHC_IP_R2	2	601.1656494140625	2	600.765714	1199.51688	-0.70276	-0.00042219	0.35044	0.00021053	-0.35232	-0.00021166	600.7658178889088	37.734	0.40861	38.508	38.279	38.687	0.77451					16	7	3	0	0	0	0.012712	1	13848	13848		92.822	45.073	1	3894900			23142	4265	16819	16936	22696	22696		219			-0.07490234599163159
ITEYMEHVY	9	Unmodified	_ITEYMEHVY_					0	0	0		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MULTI-SECPEP	A375_MHC_IP_R1	1	593.16796875	2	592.768257	1183.52196	-0.3049	-0.00018073	-0.18599	-0.00011025	-0.49089	-0.00029099	592.7683762835865	55.718	0.50997	55.718	55.431	55.941	0					18	9	3	0	0	0	0.011358	1	19927	19927		120.45	82.476	1	3434700			23143	4265	16819	16937	22697	22697					-0.06245930736531591
ITEYMEHVY	9	Unmodified	_ITEYMEHVY_					0	0	0		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MULTI-MSMS	A375_MHC_IP_R2	2	593.6690673828125	2	592.768257	1183.52196	-0.70501	-0.00041791	0.75828	0.00044948	0.053267	3.1575E-05	592.7686348206527	55.003	0.40863	55.754	55.575	55.984	0.75075					16	7	3	0	0	0	0.1478	1	20788	20788		42.095	29.563	1	5015600			23144	4265	16819	16937	22698	22698					-0.06245930736531591
ITFDESSSVYT	11	Unmodified	_ITFDESSSVYT_					0	0	0			REV__ENST00000478773.5_1_11:3829798-3845998:+|nuORF	REV__ENST00000478773.5_1_11:3829798-3845998:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	624.6782836914062	2	624.785158	1247.55576	-0.85259	-0.00053268	-1.2141	-0.00075853	-2.0666	-0.0012912	625.2875186349378	74.823	0.35587	75.561	75.365	75.721	0.73752					12	6	3	0	0	0	0.98748	1	28438	28438		8.7454	2.0222	1	1733000	+		23145	19654	16820	16938	22699	22699					-0.05811230763788444
ITFGSAPGMSI	11	Unmodified	_ITFGSAPGMSI_					0	0	0			REV__MPDZ|p.G1669Cfs*20|1|0.13|ENSG00000107186|chr9:13122119-13122120|-/AGCCAGGCCGGCA|frameshift_variant	REV__MPDZ|p.G1669Cfs*20|1|0.13|ENSG00000107186|chr9:13122119-13122120|-/AGCCAGGCCGGCA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	541.1907348632812	2	540.773342	1079.53213	-0.72057	-0.00038966	-1.8034	-0.00097524	-2.524	-0.0013649	541.2731527649214	87.235	0.45781	87.235	86.933	87.39	0					14	8	2	0	0	0	0.28117	1	32002	32002		56.177	3.9087	1	1098700	+		23146	17476	16821	16939	22700	22700					-0.004453230113085738
ITFGTLKSV	9	Unmodified	_ITFGTLKSV_					0	0	0		SLC25A16|p.F208I|1|0.25|ENSG00000122912|chr10:68488618-68488618|A/T|missense_variant	SLC25A16|p.F208I|1|0.25|ENSG00000122912|chr10:68488618-68488618|A/T|missense_variant	SLC25A16|p.F208I|1|0.25|ENSG00000122912|chr10:68488618-68488618|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	482.666259765625	2	483.286943	964.559333	-0.34155	-0.00016507	0.18513	8.9471E-05	-0.15642	-7.5596E-05	483.286949339665	61.491	0.40734	61.491	61.279	61.686	0					10	7	2	0	0	0	0.69504	1	22184	22184		1.8442	0	1	2448100			23147	29174	16822	16940	22701	22701					0.07563528591379054
ITFKDGKKF	9	Unmodified	_ITFKDGKKF_					0	0	0		tr|U7SU57|U7SU57_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01029PE=4SV=1	tr|U7SU57|U7SU57_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01029PE=4SV=1	tr|U7SU57|U7SU57_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01029PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	541.6614379882812	2	542.313492	1082.61243	-1.0901	-0.00059119	-0.27626	-0.00014982	-1.3664	-0.00074101	542.3134430845489	57.906	0.25144	58.655	58.528	58.779	0.74894					7	4	2	0	0	0	0.74412	1	21932	21932		10.074	4.3421	1	1081400			23148	29740	16823	16941	22702	22702					0.07442906374035374
ITFKDGKKF	9	Unmodified	_ITFKDGKKF_					0	0	0		tr|U7SU57|U7SU57_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01029PE=4SV=1	tr|U7SU57|U7SU57_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01029PE=4SV=1	tr|U7SU57|U7SU57_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01029PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	542.313492	1082.61243	-0.66177	-0.00035888	-0.25235	-0.00013685	-0.91412	-0.00049574	542.3133902968883	58.912	0.25538	58.912	58.786	59.041	0	0.12893	9.5866E-06	NaN	10.074	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1060600			23149	29740	16823	16941							0.07442906374035374
ITFRKSAPVK	10	Unmodified	_ITFRKSAPVK_					0	0	0			REV__ENSG00000055483|ENST00000449938|USP36	REV__ENSG00000055483|ENST00000449938|USP36	MULTI-MSMS	A375_MHC_IP_R1	1	383.2926025390625	3	382.904636	1145.69208	0.70471	0.00026984	-0.4456	-0.00017062	0.2591	9.9211E-05	382.90454018786073	38.985	0.45765	38.985	38.73	39.187	0					20	8	3	0	0	0	0.71076	1	13227	13227		7.4771	0.84669	1	6665900	+		23150	16414	16824	16942	22703	22703					0.1250597304801886
ITFTKNNQF	9	Unmodified	_ITFTKNNQF_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000117569|Q9UKA9-5|PTBP2;nc|ENSG00000117569|Q9UKA9-6|PTBP2;ENST00000476419.5_1_1:97187405-97272445:+|nuORF;nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000119314|O95758-7|PTBP3;ENSG00000117569|ENST00000674951|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	557.1903076171875	2	556.790381	1111.56621	-0.46074	-0.00025653	-3.1966	-0.0017799	-3.6574	-0.0020364	557.2891561233289	47.537	0.75763	47.537	47.263	48.02	0					24	14	2	0	0	0	0.24548	1	16801	16801		52.268	6.2474	1	4061400			23151	998;3580;3493	16825	16943	22704	22704					0.014888414719507637
ITFWHCVY	8	Unmodified	_ITFWHCVY_					0	0	0		ENST00000336755.9_1_9:37357280-37357349:+|nuORF	ENST00000336755.9_1_9:37357280-37357349:+|nuORF	ENST00000336755.9_1_9:37357280-37357349:+|nuORF	MSMS	A375_MHC_IP_R2	2	534.7247924804688	2	534.752213	1067.48987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.785	1	75.523	75.023	76.023	0.73752								0	0	0	0.16876	1	28385	28385		5.2307	1.2863	1				23152	10819	16826	16944	22705	22705					-0.04117253629033257
ITGDALETAL	10	Unmodified	_ITGDALETAL_					0	0	0		ATP2C2|p.L616Pfs*95|1|0.4|ENSG00000064270|chr16:84453150-84453151|-/C|frameshift_variant;ENSG00000064270|ENST00000262429|ATP2C2;nc|ENSG00000064270|O75185-2|ATP2C2;nc|ENSG00000064270|O75185-3|ATP2C2	ATP2C2|p.L616Pfs*95|1|0.4|ENSG00000064270|chr16:84453150-84453151|-/C|frameshift_variant	ATP2C2|p.L616Pfs*95|1|0.4|ENSG00000064270|chr16:84453150-84453151|-/C|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	502.6687316894531	2	502.268947	1002.52334	-0.49151	-0.00024687	-0.051297	-2.5765E-05	-0.5428	-0.00027263	502.2688881573389	95.682	0.96715	96.432	96.041	97.008	0.75045					25	18	2	0	0	0	0.32951	1	36296	36296		46.021	8.047	1	1159100			23153	208	16827	16945	22706	22706					0.022180266238478907
ITGDDLAYL	9	Unmodified	_ITGDDLAYL_					0	0	0			REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	MULTI-MSMS	A375_MHC_IP_R2	2	980.2650146484375	1	980.493504	979.486227	0.079959	7.8399E-05	-0.31133	-0.00030526	-0.23137	-0.00022686	980.4930486942601	91.906	1.1656	92.644	92.328	93.494	0.73772					41	22	3	0	0	0	0.12592	1	35096	35096		46.021	8.047	1	15675000	+		23154	21559	16828	16946	22707	22707					-0.004336449219067617
ITGDSPNTW	9	Unmodified	_ITGDSPNTW_					0	0	0			REV__ENST00000526008.5_1_19:17949989-17958765:-|nuORF	REV__ENST00000526008.5_1_19:17949989-17958765:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	496.1297302246094	2	495.729989	989.445425	-0.50625	-0.00025096	-0.20985	-0.00010403	-0.7161	-0.00035499	495.7300255285717	65.591	0.56268	65.591	65.257	65.819	0					16	10	2	0	0	0	0.64808	1	23763	23763		11.64	3.7301	1	1820300	+		23155	25767	16829	16947	22708	22708					-0.049719862415145144
ITGDSYNRQ	9	Unmodified	_ITGDSYNRQ_					0	0	0			REV__GOLGA7B|p.D26N|1|0.25|ENSG00000155265|chr10:97859521-97859521|G/A|missense_variant	REV__GOLGA7B|p.D26N|1|0.25|ENSG00000155265|chr10:97859521-97859521|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	528.1817626953125	2	527.25162	1052.48869	-0.44642	-0.00023538	-2.6371	-0.0013904	-3.0836	-0.0016258	527.2496652586071	108.54	0.81582	109.28	108.91	109.73	0.74792					32	15	3	0	0	0	0.65721	1	40980	40980		10.824	2.9138	1	2814500	+		23156	26691	16830	16948	22709	22709					-0.03545796464254636
ITGERLSAY	9	Unmodified	_ITGERLSAY_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.K1434Nfs*14|1|0.29|ENSG00000153207|chr1:246855808-246855809|AC/-|frameshift_variant	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-SECPEP	A375_MHC_IP_R1	1	504.6432189941406	2	505.269281	1008.52401	-0.43639	-0.00022049	-2.4199	-0.0012227	-2.8563	-0.0014432	505.2679983538248	36.246	0.45694	36.246	35.932	36.389	0					13	8	2	0	0	0	0.43207	1	12130	12130		33.445	10.709	1	1999200			23157	6016	16831	16949	22710	22710					0.02008866063579262
ITGERLSAY	9	Unmodified	_ITGERLSAY_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.K1434Nfs*14|1|0.29|ENSG00000153207|chr1:246855808-246855809|AC/-|frameshift_variant	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-SECPEP	A375_MHC_IP_R2	2	504.6427307128906	2	505.269281	1008.52401	-0.9308	-0.00047031	-0.62127	-0.00031391	-1.5521	-0.00078421	505.26904152292525	35.48	0.35332	36.244	36.03	36.384	0.76338					11	6	2	0	0	0	0.54812	1	12903	12903		19.362	5.4559	1	1910900			23158	6016	16831	16949	22711	22711					0.02008866063579262
ITGGFDNKMLY	11	Unmodified	_ITGGFDNKMLY_					0	0	0		ENSG00000156206|ENST00000286732|CFAP161;nc|ENSG00000156206|Q6P656-2|CFAP161	ENSG00000156206|ENST00000286732|CFAP161	ENSG00000156206|ENST00000286732|CFAP161	MULTI-SECPEP	A375_MHC_IP_R2	2	629.1924438476562	2	629.810456	1257.60636	-0.82346	-0.00051862	0.15214	9.5817E-05	-0.67132	-0.0004228	630.3120021652957	67.29	0.40583	68.026	67.85	68.256	0.73631					10	7	2	0	0	0	0.84606	1	25573	25573		27.629	14.586	1	1387400			23159	6180	16832	16950	22712	22712					-0.012139799197711909
ITGKEARRAVW	11	Unmodified	_ITGKEARRAVW_					0	0	0		ENST00000518600.1_1_1:23697686-23698100:+|nuORF;ENST00000335648.3_1_1:23697575-23698100:+|nuORF	ENST00000518600.1_1_1:23697686-23698100:+|nuORF	ENST00000518600.1_1_1:23697686-23698100:+|nuORF	MSMS	A375_MHC_IP_R1	1	643.6831665039062	2	643.870028	1285.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.49	1	70.49	69.99	70.99	0								0	0	0	0.16249	1	25596	25596		5.7319	0.43497	1				23160	10810	16833	16951	22713	22713					0.09406974819921743
ITGKKKKKRV	10	Unmodified	_ITGKKKKKRV_					0	0	0			REV__nc|ENSG00000137941|Q6ZT98-2|TTLL7	REV__nc|ENSG00000137941|Q6ZT98-2|TTLL7	MSMS	A375_MHC_IP_R1	1	593.4009399414062	2	593.411332	1184.80811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.458	1	76.458	75.958	76.958	0								0	0	0	0.15591	1	27871	27871		1.6526	1.0511	1		+		23161	19048	16834	16952	22714	22714					0.22309916618746684
ITGKKKKKRVK	11	Unmodified	_ITGKKKKKRVK_					0	0	0			REV__nc|ENSG00000137941|Q6ZT98-2|TTLL7	REV__nc|ENSG00000137941|Q6ZT98-2|TTLL7	MSMS	A375_MHC_IP_R2	2	657.1100463867188	2	657.458813	1312.90307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.14	1	118.75	118.25	119.25	0.60909								0	0	0	0.16337	1	44828	44828		1.1933	0.79263	1		+		23162	19048	16835	16953	22715	22715					0.2591385008990983
ITGKLCAYEKP	11	Unmodified	_ITGKLCAYEKP_					0	0	0			REV__ENSG00000131910|ENST00000254227|NR0B2	REV__ENSG00000131910|ENST00000254227|NR0B2	MSMS	A375_MHC_IP_R2	2	408.17327880859375	3	408.221525	1221.64274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.649	1	58.398	57.898	58.898	0.74894								0	0	0	0.15694	1	21801	21801		9.2438	3.0519	1		+		23163	18627	16836	16954	22716	22716					0.0407889697689825
ITGKRLLL	8	Unmodified	_ITGKRLLL_					0	0	0		ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	MULTI-SECPEP	A375_MHC_IP_R2	2	457.1503601074219	2	457.313295	912.612037	-0.70375	-0.00032183	0.032343	1.4791E-05	-0.67141	-0.00030704	457.3134154138239	52.345	0.70828	53.097	52.831	53.54	0.75225					15	13	2	0	0	0	0.972	1	19877	19877		4.756	0	1	1575500			23164	1978	16837	16955	22717	22717					0.15223531444860328
ITGLSDPYV	9	Unmodified	_ITGLSDPYV_					0	0	0		SYT10|p.S398L|1|0.58|ENSG00000110975|chr12:33385176-33385176|G/A|missense_variant	SYT10|p.S398L|1|0.58|ENSG00000110975|chr12:33385176-33385176|G/A|missense_variant	SYT10|p.S398L|1|0.58|ENSG00000110975|chr12:33385176-33385176|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	964.4202880859375	1	964.498589	963.491313	0.15233	0.00014693	-0.41814	-0.00040329	-0.2658	-0.00025636	964.4982143647702	101.84	0.45586	101.84	101.6	102.05	0					15	8	2	0	0	0	0.25276	1	37497	37497		34.102	3.8776	1	1595200			23165	29283	16838	16956	22718	22718					0.00810658940713438
ITGNCGKEDS	10	Unmodified	_ITGNCGKEDS_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B	REV__ENSG00000168702|ENST00000389484|LRP1B	MSMS	A375_MHC_IP_R2	2	512.1799926757812	2	512.224214	1022.43387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.938	1	70.673	70.173	71.173	0.73421								0	0	0	0.15207	1	26512	26512		13.906	0	1		+		23166	20879	16839	16957	22719	22719					-0.07644551327155114
ITGPIAKLI	9	Unmodified	_ITGPIAKLI_					0	0	0		ENST00000474991.1_1_1:153580012-153580192:-|nuORF;ENSG00000188643|ENST00000368706|S100A16	ENST00000474991.1_1_1:153580012-153580192:-|nuORF	ENST00000474991.1_1_1:153580012-153580192:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	463.7076110839844	2	463.307678	924.600803	-0.23963	-0.00011102	-0.027473	-1.2729E-05	-0.2671	-0.00012375	463.30762446966946	87.74	0.81443	87.74	87.34	88.154	0					33	15	3	0	0	0	0.037683	1	32162	32162		69.105	11.634	1	6638800			23167	8920	16840	16958	22720	22720					0.13548709350720856
ITGPIAKLI	9	Unmodified	_ITGPIAKLI_					0	0	0		ENST00000474991.1_1_1:153580012-153580192:-|nuORF;ENSG00000188643|ENST00000368706|S100A16	ENST00000474991.1_1_1:153580012-153580192:-|nuORF	ENST00000474991.1_1_1:153580012-153580192:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	463.707275390625	2	463.307678	924.600803	-0.42387	-0.00019638	0.36432	0.00016879	-0.059558	-2.7594E-05	463.3078242325599	86.758	0.71201	87.491	87.1	87.812	0.73301					34	13	3	0	0	0	0.037683	1	32920	32920		69.105	11.634	1	8185200			23168	8920	16840	16958	22721	22721					0.13548709350720856
ITGRSVPENMA	11	Unmodified	_ITGRSVPENMA_					0	0	0		ENSG00000250782|ENST00000512227|TAF11L14	ENSG00000250782|ENST00000512227|TAF11L14	ENSG00000250782|ENST00000512227|TAF11L14	MSMS	A375_MHC_IP_R1	1	587.7510375976562	2	587.79788	1173.58121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.356	1	76.356	75.856	76.856	0								0	0	0	0.16191	1	27832	27832		8.7454	1.4562	1				23169	9850	16841	16959	22722	22722					0.0013596527765002975
ITGSAKSPQ	9	Unmodified	_ITGSAKSPQ_					0	0	0		ENST00000334806.9_2_19:7833788-7834010:+|nuORF	ENST00000334806.9_2_19:7833788-7834010:+|nuORF	ENST00000334806.9_2_19:7833788-7834010:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	445.12646484375	2	444.742899	887.471246	-0.12307	-5.4732E-05	-0.34054	-0.00015145	-0.4636	-0.00020618	444.7426443014895	34.532	0.25427	34.532	34.303	34.557	0					7	4	2	0	0	0	0.67539	1	11393	11393		16.149	2.2431	1	2161500			23170	10799	16842	16960	22723	22723					0.023009080007682314
ITGSYDHTV	9	Unmodified	_ITGSYDHTV_					0	0	0		ENSG00000164338|ENST00000296792|UTP15;nc|ENSG00000164338|Q8TED0-3|UTP15	ENSG00000164338|ENST00000296792|UTP15	ENSG00000164338|ENST00000296792|UTP15	MULTI-MSMS	A375_MHC_IP_R2	2	497.672119140625	2	496.737814	991.461075	-0.38032	-0.00018892	-0.60786	-0.00030195	-0.98818	-0.00049087	496.7373355252115	90.898	0.70926	91.632	91.261	91.97	0.73451					40	13	4	0	0	0	0.63811	1	34472	34472		12.532	2.3482	1	6520700			23171	6829	16843	16961	22724	22724					-0.03499699724466154
ITGTSVAYHLS	11	Unmodified	_ITGTSVAYHLS_					0	0	0		ENST00000561920.5_1_16:70154383-70162781:+|nuORF;ENSG00000090857|ENST00000288050|PDPR	ENST00000561920.5_1_16:70154383-70162781:+|nuORF	ENST00000561920.5_1_16:70154383-70162781:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	383.30474853515625	3	383.536389	1147.58734	0.45286	0.00017369	2.084	0.0007993	2.5369	0.00097299	383.53682797826946	44.19	0.46143	44.19	44.01	44.471	0					11	8	2	0	0	0	0.9836	1	15469	15469		6.2344	0	1	938700			23172	1960	16844	16962	22725	22725					0.019448067808070846
ITHIVNQNF	9	Unmodified	_ITHIVNQNF_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000468653.5_1_3:160117521-160130242:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	A375_MHC_IP_R2	2	543.6904296875	2	543.290548	1084.56654	-0.65964	-0.00035837	-0.086513	-4.7002E-05	-0.74615	-0.00040538	543.2904538288617	47.489	0.6129	48.25	47.919	48.532	0.76128					17	11	2	0	0	0	0.029064	1	17775	17775		75.761	15.687	1	6312300			23173	3184	16845	16963	22726	22726					0.027642611918054172
ITHQRTHM	8	Unmodified	_ITHQRTHM_					0	0	0		ENSG00000105497|ENST00000262259|ZNF175;ENSG00000176371|ENST00000546148|ZSCAN2	ENSG00000105497|ENST00000262259|ZNF175;ENSG00000176371|ENST00000546148|ZSCAN2	ENSG00000176371|ENST00000546148|ZSCAN2	MSMS	A375_MHC_IP_R2	2	512.1646728515625	2	512.261268	1022.50798	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.04	1	121.48	120.98	121.98	0.44488								0	0	0	0.16876	1	46247	46247		23.148	6.2061	1				23174	8015;2611	16846	16964	22727	22727					-0.002371186543200565
ITHRHKKC	8	Unmodified	_ITHRHKKC_					0	0	0			REV__ENST00000395146.8_1_4:88053548-88055802:+|nuORF	REV__ENST00000395146.8_1_4:88053548-88055802:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	512.135986328125	2	511.787453	1021.56035	-0.4634	-0.00023716	2.2747	0.0011642	1.8113	0.00092702	512.2892617911338	60.134	0.40748	60.134	59.955	60.363	0					20	7	4	0	0	0	0.8824	1	21724	21724		30.225	30.225	1	2273700	+		23175	24317	16847	16965	22728	22728					0.05043464479285831
ITHSHRREKTE	11	Unmodified	_ITHSHRREKTE_					0	0	0			REV__nc|ENSG00000134369|Q8NEY1-5|NAV1	REV__nc|ENSG00000134369|Q8NEY1-5|NAV1	MSMS	A375_MHC_IP_R1	1	697.3405151367188	2	697.368381	1392.72221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.301	1	93.301	92.801	93.801	0								0	0	0	0.16249	1	34296	34296		5.7319	0	1		+		23176	18774	16848	16966	22729	22729					0.0415567997524704
ITHVVLKEHC	10	Unmodified	_ITHVVLKEHC_					0	0	0		ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	MULTI-SECPEP	A375_MHC_IP_R1	1	393.6158752441406	3	393.549864	1177.62776	0.21415	8.4278E-05	0.21202	8.3442E-05	0.42617	0.00016772	393.55006049058125	42.54	0.35316	42.54	42.336	42.689	0					11	6	2	0	0	0	0.92957	1	14758	14758		3.3196	0.88486	1	2326800			23177	2599	16849	16967	22730	22730					0.04605449899577252
ITIEIQRY	8	Unmodified	_ITIEIQRY_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1;REV__nc|ENSG00000151914|Q03001|DST;REV__nc|ENSG00000151914|Q03001-8|DST;REV__nc|ENSG00000151914|Q03001-3|DST	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	A375_MHC_IP_R1	1	518.5985717773438	2	518.295299	1034.57605	-0.59055	-0.00030608	0.53463	0.0002771	-0.055922	-2.8984E-05	518.2954156305668	34.515	0.35449	34.515	34.303	34.657	0					9	6	2	0	0	0	0.93661	1	11360	11360		15.847	5.7733	1	1002000	+		23178	18428;19783;27289;27288	16850	16968	22731	22731					0.060140294773418645
ITIEKILSP	9	Unmodified	_ITIEKILSP_					0	0	0		nc|ENSG00000244588|Q9H4I0-2|RAD21L1;ENSG00000244588|ENST00000683101|RAD21L1;nc|ENSG00000244588|Q9H4I0|RAD21L1	nc|ENSG00000244588|Q9H4I0-2|RAD21L1	nc|ENSG00000244588|Q9H4I0-2|RAD21L1	MULTI-SECPEP	A375_MHC_IP_R1	1	507.7153015136719	2	507.3157	1012.61685	-0.33293	-0.0001689	0.40373	0.00020482	0.0708	3.5918E-05	507.31583131909474	70.757	0.56296	70.757	70.442	71.005	0					24	10	3	0	0	0	0.20645	1	25660	25660		39.95	5.548	1	3310200			23179	9822	16851	16969	22732	22732					0.11104370796954299
ITIHDRKEF	9	Unmodified	_ITIHDRKEF_					0	0	0		nc|ENSG00000259207|P05106-2|ITGB3;nc|ENSG00000259207|P05106-3|ITGB3;ENSG00000259207|ENST00000559488|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	MULTI-SECPEP	A375_MHC_IP_R2	2	386.9241943359375	3	386.880379	1157.61931	-0.42844	-0.00016575	0.099766	3.8598E-05	-0.32867	-0.00012716	386.8803864580739	23.424	0.76079	24.054	23.828	24.588	0.63014					21	14	2	0	0	0	0.72222	1	7752	7752		14.957	0	1	7964400			23180	9926	16852	16970	22733	22733					0.0468021925460107
ITIIVKRLSVY	11	Unmodified	_ITIIVKRLSVY_					0	0	0			REV__ENSG00000214891|ENST00000617704|TRIM64C	REV__ENSG00000214891|ENST00000617704|TRIM64C	MSMS	A375_MHC_IP_R1	1	652.9937133789062	2	652.918655	1303.82276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.71	1	114.71	114.21	115.21	0								0	0	0	0.16297	1	42066	42066		3.2813	0	1		+		23181	22663	16853	16971	22734	22734					0.18299943976217037
ITIKGDDIPEM	11	Unmodified	_ITIKGDDIPEM_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.N3444Tfs*24|1|0.36|ENSG00000164199|chr5:90728837-90728837|A/-|frameshift_variant;nc|ENSG00000164199|Q8WXG9-3|ADGRV1;ENST00000504142.2_2_5:89924394-89949789:+|nuORF;nc|ENSG00000164199|Q8WXG9-4|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	A375_MHC_IP_R2	2	616.6685180664062	2	616.315571	1230.61659	-0.54625	-0.00033666	1.1163	0.00068802	0.57009	0.00035136	616.8172889628515	67.9	0.71211	68.636	68.409	69.121	0.73511					17	13	2	0	0	0	0.97182	1	25896	25896		18.373	11.271	1	2070800			23182	6801	16854	16972	22735	22735					0.010505830147621964
ITILEKRLY	9	Unmodified	_ITILEKRLY_					0	0	0			REV__ENST00000539664.2_1_7:28994760-28994901:-|nuORF	REV__ENST00000539664.2_1_7:28994760-28994901:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	383.59625244140625	3	383.572775	1147.69649	0.27501	0.00010549	0.11023	4.2281E-05	0.38524	0.00014777	383.5727757309708	31.442	0.45551	31.442	31.109	31.565	0					14	8	2	0	0	0	0.58047	1	9979	9979		15.248	7.6395	1	777600	+		23183	25946	16855	16973	22736	22736					0.12855437470966535
ITIPARLW	8	Unmodified	_ITIPARLW_					0	0	0			REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	MSMS	A375_MHC_IP_R1	1	485.1472473144531	2	485.297645	968.580737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.26	1	80.26	79.76	80.76	0								0	0	0	0.16876	1	29305	29305		8.5933	0.68312	1		+		23184	18288	16856	16974	22737	22737					0.09518958410740197
ITIPDIKKDRW	11	Unmodified	_ITIPDIKKDRW_					0	0	0		ENSG00000149554|ENST00000438015|CHEK1;nc|ENSG00000149554|O14757-3|CHEK1;nc|ENSG00000149554|O14757-2|CHEK1	ENSG00000149554|ENST00000438015|CHEK1	ENSG00000149554|ENST00000438015|CHEK1	MULTI-MSMS	A375_MHC_IP_R1	1	462.6693420410156	3	462.269755	1383.78744	-0.21023	-9.7184E-05	-0.097084	-4.4879E-05	-0.30732	-0.00014206	462.2697072453947	59.716	1.272	59.716	59.397	60.669	0					35	24	2	0	0	0	0.56099	2	21486	21486;21521		26.346	14.714	1	3952100			23185	5814	16857	16975	22738;22739	22738					0.11089281448403199
ITIPDIKKDRW	11	Unmodified	_ITIPDIKKDRW_					0	0	0		ENSG00000149554|ENST00000438015|CHEK1;nc|ENSG00000149554|O14757-3|CHEK1;nc|ENSG00000149554|O14757-2|CHEK1	ENSG00000149554|ENST00000438015|CHEK1	ENSG00000149554|ENST00000438015|CHEK1	MULTI-MSMS	A375_MHC_IP_R2	2	462.65069580078125	3	462.269755	1383.78744	-0.88278	-0.00040808	-0.073133	-3.3807E-05	-0.95591	-0.00044189	462.2695679237751	58.966	1.2704	59.713	58.827	60.098	0.74714					46	24	4	0	0	0	0.62126	2	22282	22236;22282		21.666	10.035	1	3487200			23186	5814	16857	16975	22740;22741	22741					0.11089281448403199
ITIPYGRKY	9	Unmodified	_ITIPYGRKY_					0	0	0		ENSG00000162231|ENST00000294172|NXF1;nc|ENSG00000162231|Q9UBU9-2|NXF1	ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	MULTI-MSMS	A375_MHC_IP_R1	1	371.6013488769531	3	370.88172	1109.62333	-0.059143	-2.1935E-05	-0.12902	-4.7851E-05	-0.18816	-6.9786E-05	370.8816723442908	41.399	0.61061	41.399	41.063	41.674	0					22	11	3	0	0	0	0.73141	1	14336	14336		4.1895	4.1895	1	7292800			23187	6514	16858	16976	22742	22742					0.0729030874831551
ITIPYGRKY	9	Unmodified	_ITIPYGRKY_					0	0	0		ENSG00000162231|ENST00000294172|NXF1;nc|ENSG00000162231|Q9UBU9-2|NXF1	ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	MULTI-MSMS	A375_MHC_IP_R2	2	371.6013488769531	3	370.88172	1109.62333	0.24454	9.0695E-05	0.15724	5.8318E-05	0.40178	0.00014901	370.88176054265546	40.608	0.45777	41.383	41.183	41.641	0.77451					23	8	4	0	0	0	0.59266	1	15039	15039		15.248	6.2722	1	6591400			23188	6514	16858	16976	22743	22743					0.0729030874831551
ITIPYGRKY	9	Unmodified	_ITIPYGRKY_					0	0	0		ENSG00000162231|ENST00000294172|NXF1;nc|ENSG00000162231|Q9UBU9-2|NXF1	ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	370.88172	1109.62333	-0.059143	-2.1935E-05	-0.12902	-4.7851E-05	-0.18816	-6.9786E-05	370.8816723442908	41.399	0.61061	41.399	41.063	41.674	0	0.0082547	-0.00016546	NaN	15.248	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7292800			23189	6514	16858	16976							0.0729030874831551
ITISISSLGVS	11	Unmodified	_ITISISSLGVS_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-MSMS	A375_MHC_IP_R1	1	539.3671875	2	538.813522	1075.61249	-0.66253	-0.00035698	-0.25919	-0.00013966	-0.92172	-0.00049663	538.813137455814	77.523	0.25127	77.523	77.336	77.588	0					6	4	2	0	0	0	0.67989	1	28282	28282		17.113	0	1	667290	+		23190	21972	16859	16977	22744	22744					0.07770861583389888
ITISISSLGVS	11	Unmodified	_ITISISSLGVS_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	538.813522	1075.61249	-0.66253	-0.00035698	-0.25919	-0.00013966	-0.92172	-0.00049663	538.813137455814	77.523	0.25127	77.523	77.336	77.588	0	0	0	NaN	17.113	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	667290	+		23191	21972	16859	16977							0.07770861583389888
ITISPEPLAL	10	Unmodified	_ITISPEPLAL_					0	0	0		PCLO|p.P2699S|5|0.3|ENSG00000186472|chr7:82952858-82952858|G/A|missense_variant	PCLO|p.P2699S|5|0.3|ENSG00000186472|chr7:82952858-82952858|G/A|missense_variant	PCLO|p.P2699S|5|0.3|ENSG00000186472|chr7:82952858-82952858|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	526.6739501953125	2	527.313158	1052.61176	-0.44428	-0.00023428	2.1784	0.0011487	1.7341	0.00091441	527.3140658139063	68.794	0.35381	68.794	68.616	68.969	0					10	6	2	0	0	0	0.85226	1	24996	24996		10.074	0	1	1606500			23192	15144	16860	16978	22745	22745					0.08756066934324735
ITITGGYLS	9	Unmodified	_ITITGGYLS_					0	0	0			REV__ENSG00000155827|ENST00000389120|RNF20	REV__ENSG00000155827|ENST00000389120|RNF20	MULTI-SECPEP	A375_MHC_IP_R1	1	463.1553649902344	2	462.755475	923.496398	-0.25275	-0.00011696	-0.065266	-3.0202E-05	-0.31802	-0.00014716	462.75541021945304	60.745	0.40728	60.745	60.464	60.871	0					12	7	2	0	0	0	0.53748	1	21908	21908		30.637	3.7529	1	1656200	+		23193	19940	16861	16979	22746	22746					0.03158962803343002
ITIVAAVLFLL	11	Unmodified	_ITIVAAVLFLL_					0	0	0		CLDN3|p.G121A|1|0.47|ENSG00000165215|chr7:73769688-73769688|C/G|missense_variant	CLDN3|p.G121A|1|0.47|ENSG00000165215|chr7:73769688-73769688|C/G|missense_variant	CLDN3|p.G121A|1|0.47|ENSG00000165215|chr7:73769688-73769688|C/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	587.39013671875	2	586.886293	1171.75803	-0.30539	-0.00017923	-0.52463	-0.0003079	-0.83002	-0.00048713	587.388207241811	95.871	0.25204	95.871	95.716	95.968	0					6	4	2	0	0	0	0.73332	1	35222	35222		5.7319	0	1	612700			23194	536	16862	16980	22747	22747					0.1790236917022412
ITIVKSTEL	9	Unmodified	_ITIVKSTEL_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-SECPEP	A375_MHC_IP_R1	1	502.70501708984375	2	502.305332	1002.59611	-0.44938	-0.00022573	0.14387	7.2266E-05	-0.30551	-0.00015346	502.3052913510502	58.506	0.40704	58.506	58.379	58.786	0					10	7	2	0	0	0	0.31606	1	21051	21051		26.268	0	1	1806400			23195	9276	16863	16981	22748	22748					0.09491780417295104
ITIVPGVL	8	Unmodified	_ITIVPGVL_					0	0	0		ENST00000471008.5_1_6:30032562-30032655:+|nuORF	ENST00000471008.5_1_6:30032562-30032655:+|nuORF	ENST00000471008.5_1_6:30032562-30032655:+|nuORF	MSMS	A375_MHC_IP_R2	2	406.6434631347656	2	406.268022	810.521491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.526	1	72.26	71.76	72.76	0.73421								0	0	0	0.16876	1	27135	27135		19.439	0	1				23196	12347	16864	16982	22749	22749					0.10865062396578651
ITKAKVWIR	9	Unmodified	_ITKAKVWIR_					0	0	0			REV__ENSG00000107371|ENST00000327304|EXOSC3	REV__ENSG00000107371|ENST00000327304|EXOSC3	MULTI-MSMS	A375_MHC_IP_R1	1	372.6414489746094	3	372.241359	1113.70225	0.7164	0.00026667	-0.31661	-0.00011786	0.39979	0.00014882	372.2412130156232	48.401	1.214	48.401	48.071	49.285	0					68	23	5	0	0	0	0.69317	1	17261	17261		7.609	1.4171	1	97134000	+		23197	17483	16865	16983	22750	22750					0.14994580773259258
ITKDVVLQW	9	Unmodified	_ITKDVVLQW_					0	0	0		ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;nc|ENSG00000154310|Q9UKE5-7|TNIK;ENSG00000154310|ENST00000436636|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000154310|Q9UKE5-5|TNIK	ENSG00000071054|ENST00000324219|MAP4K4	ENSG00000071054|ENST00000324219|MAP4K4	MULTI-SECPEP	A375_MHC_IP_R2	2	551.7179565429688	2	551.318774	1100.623	-0.72666	-0.00040062	-0.54964	-0.00030303	-1.2763	-0.00070365	551.3184317775394	79.806	0.5602	80.55	80.35	80.91	0.74474					20	10	3	0	0	0	0.036647	1	30306	30306		114.2	25.248	1	6141600			23198	1507	16866	16984	22751	22751					0.07670889028463534
ITKEDFATF	9	Unmodified	_ITKEDFATF_					0	0	0		ENST00000480874.5_1_2:264964-275202:+|nuORF;nc|ENSG00000143727|P24666-3|ACP1;ENST00000453390.5_1_2:271872-277301:+|nuORF;nc|ENSG00000143727|P24666-2|ACP1;ENSG00000143727|ENST00000272065|ACP1;ENST00000484464.5_1_2:265208-277301:+|nuORF	ENST00000480874.5_1_2:264964-275202:+|nuORF	ENST00000480874.5_1_2:264964-275202:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	535.728271484375	2	536.27149	1070.52843	-0.6052	-0.00032455	0.2161	0.00011589	-0.3891	-0.00020866	536.271449732873	62.767	1.2286	62.767	62.3	63.529	0					47	23	3	0	0	0	0.16764	1	22643	22643		43.772	10.987	1	8620800			23199	5426	16867	16985	22752	22752					-0.004016695135305781
ITKEDFATF	9	Unmodified	_ITKEDFATF_					0	0	0		ENST00000480874.5_1_2:264964-275202:+|nuORF;nc|ENSG00000143727|P24666-3|ACP1;ENST00000453390.5_1_2:271872-277301:+|nuORF;nc|ENSG00000143727|P24666-2|ACP1;ENSG00000143727|ENST00000272065|ACP1;ENST00000484464.5_1_2:265208-277301:+|nuORF	ENST00000480874.5_1_2:264964-275202:+|nuORF	ENST00000480874.5_1_2:264964-275202:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	536.671630859375	2	536.27149	1070.52843	-1.1045	-0.00059231	0.084464	4.5296E-05	-1.02	-0.00054701	536.2714517013848	61.97	0.76025	62.712	62.37	63.13	0.74263					37	14	4	0	0	0	0.062502	1	23462	23462		74.2	28.179	1	8782700			23200	5426	16867	16985	22753	22753					-0.004016695135305781
ITKKGREYLA	10	Unmodified	_ITKKGREYLA_					0	0	0		tr|U7T708|U7T708_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00076PE=4SV=1	tr|U7T708|U7T708_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00076PE=4SV=1	tr|U7T708|U7T708_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00076PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	393.96783447265625	3	393.567912	1177.68191	0.0041938	1.6505E-06	0.072322	2.8464E-05	0.076516	3.0114E-05	393.9022747878677	47.276	0.45831	48.037	47.817	48.275	0.76128					17	8	3	0	0	0	0.70972	1	17761	17761		7.9454	1.315	1	2110600			23201	30056	16868	16986	22754	22754					0.10017365322801197
ITKKMIDKL	9	Unmodified	_ITKKMIDKL_					0	0	0		ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	MULTI-MSMS	A375_MHC_IP_R1	1	364.6047668457031	3	363.89486	1088.66275	0.038223	1.3909E-05	-0.14958	-5.443E-05	-0.11135	-4.0521E-05	363.8948229933378	37.941	0.35744	37.941	37.71	38.067	0					16	6	3	0	0	0	0.61998	1	12854	12854		9.544	0	1	6503500			23202	4255	16869	16987	22755	22755					0.12196692707539114
ITKKMIDKL	9	Unmodified	_ITKKMIDKL_					0	0	0		ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	MULTI-MSMS	A375_MHC_IP_R2	2	364.6046447753906	3	363.89486	1088.66275	-0.6272	-0.00022823	0.16834	6.1258E-05	-0.45886	-0.00016698	363.89490930690005	36.826	0.50714	37.597	37.41	37.917	0.7709					20	9	3	0	0	0	0.61998	1	13501	13501		9.544	0	1	4319100			23203	4255	16869	16987	22756	22756					0.12196692707539114
ITKLLILKLRY	11	Unmodified	_ITKLLILKLRY_					0	0	0		nc|ENSG00000107614|O14717-3|TRDMT1;nc|ENSG00000107614|O14717-2|TRDMT1;ENSG00000107614|ENST00000377799|TRDMT1;ENST00000452380.6_1_10:17194042-17210877:-|nuORF	nc|ENSG00000107614|O14717-3|TRDMT1	nc|ENSG00000107614|O14717-3|TRDMT1	MSMS	A375_MHC_IP_R2	2	687.7459716796875	2	687.465773	1372.91699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.266	1	98.022	97.522	98.522	0.75586								0	0	0	0.16334	1	36919	36919		1.3295	0.9789	1				23204	2746	16870	16988	22757	22757					0.24545082798340445
ITKLRFHIT	9	Unmodified	_ITKLRFHIT_					0	0	0			REV__ENST00000394321.9_1_19:7591427-7598678:+|nuORF	REV__ENST00000394321.9_1_19:7591427-7598678:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	376.6214599609375	3	376.901114	1127.68151	0.71874	0.00027089	3.5582	0.0013411	4.2769	0.001612	376.90088729462775	48.426	0.456	48.426	48.223	48.679	0					25	8	4	0	0	0	0.67483	1	17136	17136		6.6304	0	1	3921500	+		23205	16931	16871	16989	22758	22758					0.12277990393590699
ITKLSIDTW	9	Unmodified	_ITKLSIDTW_					0	0	0			REV__ENSG00000070018|ENST00000261349|LRP6	REV__ENSG00000070018|ENST00000261349|LRP6	MULTI-SECPEP	A375_MHC_IP_R2	2	538.2003173828125	2	538.802957	1075.59136	-0.74096	-0.00039923	1.3153	0.00070867	0.57432	0.00030944	539.3053238602895	84.715	0.50851	85.451	85.272	85.78	0.73602					17	9	3	0	0	0	0.73363	1	32204	32204		10.824	0.75	1	1270400	+		23206	16562	16872	16990	22759	22759					0.05658896274508152
ITKMDKLHLP	10	Unmodified	_ITKMDKLHLP_					0	0	0		NUGGC|p.V353I|1|0.36|ENSG00000189233|chr8:28060466-28060466|C/T|missense_variant	NUGGC|p.V353I|1|0.36|ENSG00000189233|chr8:28060466-28060466|C/T|missense_variant	NUGGC|p.V353I|1|0.36|ENSG00000189233|chr8:28060466-28060466|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	399.9470520019531	3	399.233765	1194.67946	-0.43237	-0.00017262	0.2329	9.298E-05	-0.19947	-7.9637E-05	399.2337926352327	24.12	0.65949	24.12	23.838	24.498	0					28	12	3	0	0	0	0.68889	1	6885	6885		14.218	5.2419	1	5671500			23207	15036	16873	16991	22760	22760					0.08991193593487878
ITKMGNTAV	9	Unmodified	_ITKMGNTAV_					0	0	0			REV__ENSG00000169071|ENST00000375708|ROR2	REV__ENSG00000169071|ENST00000375708|ROR2	MULTI-SECPEP	A375_MHC_IP_R1	1	468.1543884277344	2	467.754953	933.495352	-0.28794	-0.00013468	-0.39531	-0.00018491	-0.68325	-0.00031959	467.75466201894466	36.158	0.45726	36.158	35.881	36.339	0					14	8	2	0	0	0	0.38578	1	12116	12116		34.402	9.0024	1	1779800	+		23208	20903	16874	16992	22761	22761					0.025944251627834092
ITKNFHDEL	9	Unmodified	_ITKNFHDEL_					0	0	0			REV__ENSG00000140259|ENST00000267812|MFAP1	REV__ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	A375_MHC_IP_R1	1	558.7627563476562	2	558.787838	1115.56112	-0.58357	-0.00032609	0.47027	0.00026278	-0.1133	-6.3312E-05	558.7879772918704	80.058	0.81366	80.058	79.778	80.592	0					35	15	4	0	0	0	0.27715	1	29148	29148		32.305	0	1	18634000	+		23209	19197	16875	16993	22762	22762					0.007965376093125087
ITKNIQELL	9	Unmodified	_ITKNIQELL_					0	0	0		nc|ENSG00000139436|Q14161-11|GIT2;nc|ENSG00000139436|Q14161-7|GIT2;nc|ENSG00000139436|Q14161-9|GIT2;nc|ENSG00000139436|Q14161-6|GIT2;nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-8|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;ENSG00000139436|ENST00000355312|GIT2	nc|ENSG00000139436|Q14161-11|GIT2	nc|ENSG00000139436|Q14161-11|GIT2	MULTI-SECPEP	A375_MHC_IP_R1	1	536.7241821289062	2	536.324057	1070.63356	-0.63084	-0.00033834	1.3454	0.00072155	0.71452	0.00038321	536.3251971712834	70.668	1.8861	70.668	69.529	71.415	0					54	36	3	0	0	0	0.11849	1	25639	25639		61.602	3.8799	1	6300400			23210	5077	16876	16994	22763	22763					0.10106871682887686
ITKNIQELL	9	Unmodified	_ITKNIQELL_					0	0	0		nc|ENSG00000139436|Q14161-11|GIT2;nc|ENSG00000139436|Q14161-7|GIT2;nc|ENSG00000139436|Q14161-9|GIT2;nc|ENSG00000139436|Q14161-6|GIT2;nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-8|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;ENSG00000139436|ENST00000355312|GIT2	nc|ENSG00000139436|Q14161-11|GIT2	nc|ENSG00000139436|Q14161-11|GIT2	MULTI-SECPEP	A375_MHC_IP_R2	2	536.5650634765625	2	536.324057	1070.63356	-0.78753	-0.00042237	0.81583	0.00043755	0.028295	1.5175E-05	536.3245339238157	69.728	1.5745	70.462	69.474	71.048	0.73421					47	30	3	0	0	0	0.028087	1	26455	26455		96.367	7.4127	1	10235000			23211	5077	16876	16994	22764	22764					0.10106871682887686
ITKPTLITTY	10	Unmodified	_ITKPTLITTY_					0	0	0			REV__ENSG00000181616|ENST00000322653|OR52H1	REV__ENSG00000181616|ENST00000322653|OR52H1	MULTI-SECPEP	A375_MHC_IP_R1	1	576.2391967773438	2	575.839539	1149.66453	-0.23442	-0.00013499	0.45315	0.00026094	0.21873	0.00012595	575.839708689789	76.21	0.40375	76.21	76.017	76.421	0					14	7	3	0	0	0	0.92832	1	27816	27816		13.906	1.6654	1	1861500	+		23212	21659	16877	16995	22765	22765					0.09568024997133762
ITKYDGSNL	9	Unmodified	_ITKYDGSNL_					0	0	0			REV__ENSG00000197157|ENST00000354725|SND1	REV__ENSG00000197157|ENST00000354725|SND1	MSMS	A375_MHC_IP_R2	2	505.68682861328125	2	505.761289	1009.50803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.16	1	83.9	83.4	84.4	0.73962								0	0	0	0.15273	1	31605	31605		17.113	0.1706	1		+		23213	22264	16878	16996	22766	22766					0.0036515982666287528
ITKYPVLF	8	Unmodified	_ITKYPVLF_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-SECPEP	A375_MHC_IP_R1	1	491.150390625	2	490.794404	979.574254	-0.51428	-0.00025241	-0.1827	-8.9668E-05	-0.69698	-0.00034207	490.79437156057935	85.275	0.61069	85.275	85.005	85.616	0					18	11	2	0	0	0	0.68831	1	31275	31275		34.402	0	1	1144600			23214	7536	16879	16997	22767	22767					0.08365020459382322
ITKYPVLF	8	Unmodified	_ITKYPVLF_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-SECPEP	A375_MHC_IP_R2	2	491.1939392089844	2	490.794404	979.574254	-0.44945	-0.00022059	-0.23003	-0.0001129	-0.67949	-0.00033349	490.79437391049356	84.29	0.55923	85.03	84.766	85.325	0.73962					16	10	2	0	0	0	0.68299	1	32081	32081		43.772	18.373	1	1769300			23215	7536	16879	16997	22768	22768					0.08365020459382322
ITKYRTRW	8	Unmodified	_ITKYRTRW_					0	0	0			REV__ENSG00000152034|ENST00000281806|MCHR2	REV__ENSG00000152034|ENST00000281806|MCHR2	MULTI-SECPEP	A375_MHC_IP_R1	1	374.95379638671875	3	375.217214	1122.62981	0.48726	0.00018283	-1.0888	-0.00040852	-0.6015	-0.00022569	375.2166963278519	37.327	0.35744	37.327	37.096	37.454	0					11	6	2	0	0	0	0.972	1	12589	12589		1.3295	0	1	2072200	+		23216	19786	16880	16998	22769	22769					0.07340246699686759
ITLDDINDNAP	11	Unmodified	_ITLDDINDNAP_					0	0	0		ENSG00000129910|ENST00000289746|CDH15	ENSG00000129910|ENST00000289746|CDH15	ENSG00000129910|ENST00000289746|CDH15	MULTI-MSMS	A375_MHC_IP_R1	1	601.69580078125	2	600.790775	1199.567	-0.377	-0.0002265	3.59	0.0021569	3.213	0.0019304	601.2955581841439	75.568	0.55251	75.568	75.262	75.815	0					25	10	3	0	0	0	0.59391	1	27561	27561		23.79	3.3752	1	5771500			23217	4212	16881	16999	22770	22770					-0.024804086696804006
ITLDDINDNAP	11	Unmodified	_ITLDDINDNAP_					0	0	0		ENSG00000129910|ENST00000289746|CDH15	ENSG00000129910|ENST00000289746|CDH15	ENSG00000129910|ENST00000289746|CDH15	MULTI-MATCH	A375_MHC_IP_R2	2		2	600.790775	1199.567	-0.56684	-0.00034055	3.0322	0.0018217	2.4654	0.0014812	601.2956288402783	74.818	0.55754	75.555	75.264	75.822	0.73751	-0.0063722	-0.00052129	NaN	23.79	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5750800			23218	4212	16881	16999							-0.024804086696804006
ITLDLIRVL	9	Unmodified	_ITLDLIRVL_					0	0	0		nc|ENSG00000068784|Q8N5C6-2|SRBD1;ENSG00000068784|ENST00000263736|SRBD1	nc|ENSG00000068784|Q8N5C6-2|SRBD1	nc|ENSG00000068784|Q8N5C6-2|SRBD1	MULTI-SECPEP	A375_MHC_IP_R2	2	529.1368408203125	2	528.344792	1054.67503	-0.52768	-0.0002788	0.084661	4.473E-05	-0.44302	-0.00023407	528.3447196119329	77.794	0.25832	78.537	78.365	78.624	0.74293					6	4	2	0	0	0	0.58271	1	29534	29534		14.838	4.0143	1	599470			23219	1466	16882	17000	22771	22771					0.14988052442231492
ITLHPESAI	9	Unmodified	_ITLHPESAI_					0	0	0		nc|ENSG00000206538|A8MV65-2|VGLL3;ENSG00000206538|ENST00000398399|VGLL3	nc|ENSG00000206538|A8MV65-2|VGLL3	nc|ENSG00000206538|A8MV65-2|VGLL3	MULTI-SECPEP	A375_MHC_IP_R1	1	491.17388916015625	2	490.7742	979.533846	-0.41618	-0.00020425	0.38413	0.00018852	-0.032053	-1.5731E-05	490.77439610641574	83.861	0.50694	83.861	83.634	84.141	0					16	9	2	0	0	0	0.62767	1	30731	30731		23.148	15.238	1	2136200			23220	9542	16883	17001	22772	22772					0.04326054068940266
ITLIFFLAW	9	Unmodified	_ITLIFFLAW_					0	0	0		ENSG00000102452|ENST00000251127|NALCN;nc|ENSG00000102452|Q8IZF0-2|NALCN;ENST00000470333.1_1_13:101833448-102051507:-|nuORF;NALCN|p.I927Tfs*7|1|0.09|ENSG00000102452|chr13:101104406-101104407|-/TATGGATAGTT|frameshift_variant;ENST00000497170.5_1_13:101795259-101997694:-|nuORF	ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MULTI-SECPEP	A375_MHC_IP_R1	1	562.6251831054688	2	562.331153	1122.64775	-0.50708	-0.00028515	1.575	0.00088566	1.0679	0.00060052	562.3331818646616	77.169	0.40753	77.169	76.878	77.286	0					10	7	2	0	0	0	0.77834	1	28098	28098		4.756	0.42677	1	1312400			23221	2380	16884	17002	22773	22773					0.09133568901825129
ITLIIIFIIKL	11	Unmodified	_ITLIIIFIIKL_					0	0	0		tr|U7SJG6|U7SJG6_FUSNURCKC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02133PE=4SV=1	tr|U7SJG6|U7SJG6_FUSNURCKC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02133PE=4SV=1	tr|U7SJG6|U7SJG6_FUSNURCKC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02133PE=4SV=1	MSMS	A375_MHC_IP_R2	2	650.45458984375	2	650.454342	1298.89413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.79	1	125.12	124.62	125.62	0.32969								0	0	0	0.16302	1	48380	48380		2.9952	0	1				23222	29451	16885	17003	22774	22774					0.2566406368089247
ITLPRRKRRR	10	Unmodified	_ITLPRRKRRR_					0	0	0			REV__ENST00000300811.7_1_19:44112133-44118443:-|nuORF	REV__ENST00000300811.7_1_19:44112133-44118443:-|nuORF	MSMS	A375_MHC_IP_R1	1	676.1419067382812	2	676.447103	1350.87965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.2	1	112.2	111.7	112.7	0								0	0	0	0.15596	1	41125	41125		1.4819	0	1		+		23223	23417	16886	17004	22775	22775					0.21824849095946774
ITLPTEASTW	10	Unmodified	_ITLPTEASTW_					0	0	0		ENSG00000187801|ENST00000361584|ZFP69B;ENST00000469416.1_1_1:40916633-40922838:+|nuORF;ENSG00000187815|ENST00000372706|ZFP69	ENSG00000187801|ENST00000361584|ZFP69B	ENSG00000187801|ENST00000361584|ZFP69B	MULTI-SECPEP	A375_MHC_IP_R2	2	559.6622314453125	2	559.790047	1117.56554	-0.62316	-0.00034884	-0.22119	-0.00012382	-0.84435	-0.00047266	559.7901571185124	104.04	0.55714	104.81	104.45	105	0.76308					16	10	2	0	0	0	0.52647	1	39356	39356		56.177	39.235	1	970770			23224	8860	16887	17005	22776	22776					0.011460020322374476
ITLRSEPQY	9	Unmodified	_ITLRSEPQY_					0	0	0		ENSG00000110756|ENST00000349215|HPS5;nc|ENSG00000110756|Q9UPZ3-2|HPS5	ENSG00000110756|ENST00000349215|HPS5	ENSG00000110756|ENST00000349215|HPS5	MULTI-MSMS	A375_MHC_IP_R2	2	554.3935546875	2	553.795663	1105.57677	-0.54379	-0.00030115	0.35475	0.00019646	-0.18905	-0.00010469	553.7956403875719	94.494	0.65831	95.239	94.969	95.627	0.74474					19	12	2	0	0	0	0.53367	1	36012	36012		18.146	2.2992	1	1389600			23225	2946	16888	17006	22777	22777					0.028208241263882883
ITLRSEPQY	9	Unmodified	_ITLRSEPQY_					0	0	0		ENSG00000110756|ENST00000349215|HPS5;nc|ENSG00000110756|Q9UPZ3-2|HPS5	ENSG00000110756|ENST00000349215|HPS5	ENSG00000110756|ENST00000349215|HPS5	MULTI-MATCH	A375_MHC_IP_R1	1		2	553.795663	1105.57677	-0.63762	-0.00035311	0.73732	0.00040833	0.099701	5.5214E-05	553.7961455496928	95.421	0.86007	95.421	95.007	95.867	0	0.091115	9.6093E-05	NaN	18.146	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1374000			23226	2946	16888	17006							0.028208241263882883
ITLSDGLHNF	10	Unmodified	_ITLSDGLHNF_					0	0	0		nc|ENSG00000104635|Q15043-2|SLC39A14;nc|ENSG00000104635|Q15043-3|SLC39A14;ENSG00000104635|ENST00000381237|SLC39A14	nc|ENSG00000104635|Q15043-2|SLC39A14	nc|ENSG00000104635|Q15043-2|SLC39A14	MULTI-SECPEP	A375_MHC_IP_R1	1	559.187744140625	2	558.787838	1115.56112	-0.58357	-0.00032609	0.47027	0.00026278	-0.1133	-6.3312E-05	558.7879772918704	80.058	0.81366	80.058	79.778	80.592	0					35	15	4	0	0	0	0.011428	1	29210	29210		139.78	14.253	1	18634000			23227	2523	16889	17007	22778	22778					0.007965376093352461
ITLSRERPHL	10	Unmodified	_ITLSRERPHL_					0	0	0		ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	MULTI-MSMS	A375_MHC_IP_R1	1	408.6407165527344	3	407.906928	1220.69895	-0.39332	-0.00016044	-0.66139	-0.00026979	-1.0547	-0.00043022	407.90655726928014	130.22	2.1808	130.22	129.35	131.53	0					103	42	4	0	0	0	0.71944	1	50354	50354		1.7423	0	1	41912000			23228	2414	16890	17008	22779	22779					0.09743285928607293
ITLSRERPHL	10	Unmodified	_ITLSRERPHL_					0	0	0		ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	407.906928	1220.69895	-0.0024978	-1.0189E-06	-1.1393	-0.00046475	-1.1418	-0.00046577	407.90635665407365	130.09	1.9771	130.31	129.64	131.62	0.21419	0.042033	-0.00023519	NaN	1.7423	120	38	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42356000			23229	2414	16890	17008							0.09743285928607293
ITLSWNPP	8	Unmodified	_ITLSWNPP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R2	2	463.6890869140625	2	464.25036	926.486168	-0.75353	-0.00034982	0.35558	0.00016508	-0.39794	-0.00018475	464.25033043159095	50.519	1.011	51.273	50.804	51.815	0.75406					31	19	3	0	0	0	0.972	1	19111	19111		8.5933	0	1	4394300			23230	6151;14694	16891	17009	22780	22780					0.01998399868762135
ITLVTKNAF	9	Unmodified	_ITLVTKNAF_					0	0	0			REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	MULTI-SECPEP	A375_MHC_IP_R1	1	503.1755676269531	2	503.800217	1005.58588	-0.34239	-0.0001725	-0.37243	-0.00018763	-0.71482	-0.00036013	504.30120075480437	98.532	0.6638	98.532	98.2	98.864	0					15	12	2	0	0	0	0.76187	1	36231	36231		7.2892	1.0834	1	956700	+		23231	18314	16892	17010	22781	22781					0.08331217482702868
ITLYNDNGGP	10	Unmodified	_ITLYNDNGGP_					0	0	0			REV__nc|ENSG00000092203|O94842-3|TOX4	REV__nc|ENSG00000092203|O94842-3|TOX4	MULTI-MSMS	A375_MHC_IP_R2	2	532.2061157226562	2	532.256371	1062.49819	-0.80859	-0.00043038	0.2421	0.00012886	-0.56649	-0.00030152	532.2567436083733	50.721	0.7599	51.475	50.955	51.715	0.75406					19	14	2	0	0	0	0.70651	1	18913	18913		9.3831	9.3831	1	1360700	+		23232	16967	16893	17011	22782	22782					-0.030560281787074928
ITNALHHIPD	10	Unmodified	_ITNALHHIPD_					0	0	0		nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENSG00000079459|ENST00000220584|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF;nc|ENSG00000079459|P37268-4|FDFT1	nc|ENSG00000079459|P37268-3|FDFT1	nc|ENSG00000079459|P37268-3|FDFT1	MULTI-SECPEP	A375_MHC_IP_R1	1	378.2612609863281	3	377.536612	1129.58801	0.30113	0.00011369	0.52096	0.00019668	0.82209	0.00031037	377.53686198434326	34.583	0.35426	34.583	34.405	34.759	0					9	6	2	0	0	0	0.92445	1	11483	11483		14.218	14.218	1	1007800			23233	1697	16894	17012	22783	22783					0.028396462205364514
ITNDSKITV	9	Unmodified	_ITNDSKITV_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;nc|ENSG00000125755|Q92797-2|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	A375_MHC_IP_R2	2	495.15032958984375	2	495.776939	989.539325	-0.68417	-0.0003392	0.36484	0.00018088	-0.31933	-0.00015832	495.7792092225103	40.84	0.25343	41.614	41.489	41.743	0.77451					5	4	2	0	0	0	0.3213	1	15136	15136		37.974	8.8924	1	507990			23234	3986	16895	17013	22784	22784					0.0441373286076896
ITNKLQHLK	9	Unmodified	_ITNKLQHLK_					0	0	0		ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	MULTI-MSMS	A375_MHC_IP_R1	1	365.96087646484375	3	365.560869	1093.66078	0.16232	5.9336E-05	0.13749	5.026E-05	0.2998	0.0001096	365.56076882225454	58.811	0.5605	58.811	58.582	59.143	0					16	10	2	0	0	0	0.73491	1	21168	21168		3.8763	1.1411	1	2182800			23235	1635	16896	17014	22785	22785					0.1176940001391813
ITNKLQHLK	9	Unmodified	_ITNKLQHLK_					0	0	0		ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	365.560869	1093.66078	0.16232	5.9336E-05	0.13749	5.026E-05	0.2998	0.0001096	365.56076882225454	58.811	0.5605	58.811	58.582	59.143	0	0.088864	0.00020182	NaN	3.8763	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2182800			23236	1635	16896	17014							0.1176940001391813
ITNNFFRFL	9	Unmodified	_ITNNFFRFL_					0	0	0		nc|ENSG00000138036|Q8TCX1-4|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-4|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-4|DYNC2LI1	MULTI-SECPEP	A375_MHC_IP_R2	2	585.760498046875	2	586.316566	1170.61858	-0.53044	-0.00031101	-0.056597	-3.3183E-05	-0.58704	-0.00034419	586.3168057947512	108.31	0.66348	109.07	108.76	109.43	0.75436					19	12	3	0	0	0	0.47368	1	40876	40876		26.884	6.43	1	1219200			23237	14632	16897	17015	22786	22786					0.04009424605555978
ITNNKIMWE	9	Unmodified	_ITNNKIMWE_					0	0	0		HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|152|3|sense	HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|152|3|sense	HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|152|3|sense	MULTI-SECPEP	A375_MHC_IP_R1	1	384.2864990234375	3	383.53047	1147.56958	0.17022	6.5285E-05	-0.22867	-8.77E-05	-0.058443	-2.2415E-05	383.53043390786365	32.227	0.4593	32.227	32.075	32.535	0					11	8	2	0	0	0	0.74412	1	10454	10454		10.151	1.1743	1	2182900			23238	14113	16898	17016	22787	22787					0.0016976825429537712
ITNNKIMWE	9	Unmodified	_ITNNKIMWE_					0	0	0		HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|152|3|sense	HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|152|3|sense	HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|152|3|sense	MULTI-SECPEP	A375_MHC_IP_R2	2	384.2865905761719	3	383.53047	1147.56958	-0.13521	-5.1858E-05	0.068684	2.6342E-05	-0.066529	-2.5516E-05	383.5305797983835	31.383	0.66441	32.102	31.77	32.434	0.71857					22	12	3	0	0	0	0.77396	1	11145	11145		6.6304	5.0381	1	3220700			23239	14113	16898	17016	22788	22788					0.0016976825429537712
ITNPKSLLY	9	Unmodified	_ITNPKSLLY_					0	0	0		ENSG00000137842|ENST00000260403|TMEM62	ENSG00000137842|ENST00000260403|TMEM62	ENSG00000137842|ENST00000260403|TMEM62	MULTI-SECPEP	A375_MHC_IP_R1	1	525.2047729492188	2	524.8055	1047.59645	-0.48257	-0.00025325	0.89688	0.00047069	0.41432	0.00021744	524.8057313398414	59.373	0.5588	59.373	59.092	59.651	0					17	10	2	0	0	0	0.27114	1	21366	21366		45.74	13.434	1	1331400			23240	4927	16899	17017	22789	22789					0.07455200137133033
ITNQYLSYSSI	11	Unmodified	_ITNQYLSYSSI_					0	0	0			REV__ENST00000531980.5_1_1:67337151-67359009:-|nuORF	REV__ENST00000531980.5_1_1:67337151-67359009:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	430.6191101074219	3	430.218837	1287.63468	-0.1776	-7.6406E-05	0.40139	0.00017269	0.22379	9.628E-05	430.2190914460252	50.382	0.56271	50.382	49.998	50.561	0					14	10	2	0	0	0	0.72851	1	17873	17873		10.315	1.339	1	2637900	+		23241	19814	16900	17018	22790	22790					0.002370412611298889
ITNTRISQYF	10	Unmodified	_ITNTRISQYF_					0	0	0			REV__tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	REV__tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	415.2873840332031	3	414.887422	1241.64044	0.34957	0.00014503	-0.43508	-0.00018051	-0.085517	-3.548E-05	414.88717416818736	57.413	0.61055	57.413	57.007	57.618	0					27	11	3	0	0	0	0.39465	1	20560	20560		36.395	3.7785	1	5574900	+		23242	28685	16901	17019	22791	22791					0.029281845634841375
ITNTRISQYF	10	Unmodified	_ITNTRISQYF_					0	0	0			REV__tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	REV__tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	415.2866516113281	3	414.887422	1241.64044	-0.34895	-0.00014477	-0.18054	-7.4904E-05	-0.52949	-0.00021968	414.8873667665152	56.44	0.71408	57.19	56.847	57.561	0.75015					28	13	3	0	0	0	0.70461	1	21325	21325		30.431	3.3027	1	5668500	+		23243	28685	16901	17019	22792	22792					0.029281845634841375
ITNYQSFE	8	Unmodified	_ITNYQSFE_					0	0	0		nc|ENSG00000157869|P51157-3|RAB28;nc|ENSG00000157869|P51157-2|RAB28;ENSG00000157869|ENST00000330852|RAB28	nc|ENSG00000157869|P51157-3|RAB28	nc|ENSG00000157869|P51157-3|RAB28	MULTI-MSMS	A375_MHC_IP_R1	1	501.6556701660156	2	501.232364	1000.45018	-0.2676	-0.00013413	0.0077787	3.8989E-06	-0.25982	-0.00013023	501.2323967476637	56.192	0.3559	56.192	55.991	56.347	0					9	6	2	0	0	0	0.75322	1	20149	20149		19.439	0	1	591090			23244	6273	16902	17020	22793	22793					-0.05003102098748968
ITNYSRRF	8	Unmodified	_ITNYSRRF_					0	0	0		CHAC2|p.Y24N|1|0.16|ENSG00000143942|chr2:53767956-53767956|T/A|missense_variant;ENSG00000143942|ENST00000295304|CHAC2	CHAC2|p.Y24N|1|0.16|ENSG00000143942|chr2:53767956-53767956|T/A|missense_variant	CHAC2|p.Y24N|1|0.16|ENSG00000143942|chr2:53767956-53767956|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	529.1585083007812	2	528.78289	1055.55123	-0.78363	-0.00041437	0.14313	7.5686E-05	-0.6405	-0.00033868	528.7827430211602	39.8	0.35538	39.8	39.643	39.999	0					11	6	2	0	0	0	0.90775	1	13685	13685		20.454	3.5113	1	1221100			23245	383	16903	17021	22794	22794					0.02567394394600342
ITPENLPQI	9	Unmodified	_ITPENLPQI_					0	0	0		ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MULTI-SECPEP	A375_MHC_IP_R1	1	513.1869506835938	2	512.787307	1023.56006	-0.71648	-0.0003674	0.066871	3.4291E-05	-0.64961	-0.00033311	512.787227631074	90.579	0.66079	90.579	90.336	90.997	0					26	12	3	0	0	0	0.011357	1	33275	33275		114.2	42.279	1	3877500			23246	1035	16904	17022	22795	22795					0.04922323240418791
ITPENLPQI	9	Unmodified	_ITPENLPQI_					0	0	0		ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MULTI-SECPEP	A375_MHC_IP_R2	2	513.1871948242188	2	512.787307	1023.56006	-0.66166	-0.00033929	0.37888	0.00019428	-0.28278	-0.00014501	512.787290242412	89.886	0.66528	90.618	90.339	91.004	0.7318					29	12	3	0	0	0	0.056023	1	34190	34190		85.642	12.674	1	5111100			23247	1035	16904	17022	22796	22796					0.04922323240418791
ITPFSYISLPS	11	Unmodified	_ITPFSYISLPS_					0	0	0		nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A;nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A	nc|ENSG00000169894|Q02505-2|MUC3A	nc|ENSG00000169894|Q02505-2|MUC3A	MULTI-MSMS	A375_MHC_IP_R2	2	408.9543762207031	3	408.88854	1223.64379	0.073595	3.0092E-05	2.3247	0.00095053	2.3983	0.00098062	408.8888560862478	42.244	0.45953	43.017	42.809	43.268	0.7724					14	8	3	0	0	0	0.70017	1	15729	15729		15.538	1.3203	1	1361400			23248	7447	16905	17023	22797	22797					0.040914346174758975
ITPKMMVNF	9	Unmodified	_ITPKMMVNF_					0	0	0		ENSG00000279961|ENST00000623286|OR8U3	ENSG00000279961|ENST00000623286|OR8U3	ENSG00000279961|ENST00000623286|OR8U3	MSMS	A375_MHC_IP_R2	2	540.6898193359375	2	540.782656	1079.55076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.059	1	57.809	57.309	58.309	0.75015								0	0	0	0.15411	1	21573	21573		14.838	0.93222	1				23249	10043	16906	17024	22798	22798					0.014165153588919566
ITPLRRATV	9	Unmodified	_ITPLRRATV_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;ENST00000483030.1_1_1:115263111-115268953:-|nuORF	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-SECPEP	A375_MHC_IP_R2	2	513.4691162109375	2	513.824558	1025.63456	-0.75216	-0.00038648	-0.32941	-0.00016926	-1.0816	-0.00055574	513.8243882022956	75.839	0.40833	76.58	76.282	76.691	0.74052					13	7	2	0	0	0	0.69504	1	28701	28701		0.45834	0	1	2169200			23250	966	16907	17025	22799	22799					0.12277130842448969
ITPLVVAG	8	Unmodified	_ITPLVVAG_					0	0	0			REV__ENSG00000128594|ENST00000249363|LRRC4	REV__ENSG00000128594|ENST00000249363|LRRC4	MSMS	A375_MHC_IP_R1	1	385.28924560546875	2	385.244547	768.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.579	1	68.579	68.079	69.079	0								0	0	0	0.16876	1	24870	24870		5.7604	0	1		+		23251	18457	16908	17026	22800	22800					0.0810420284542488
ITPVSIPVHV	10	Unmodified	_ITPVSIPVHV_					0	0	0		UBN1|p.P1050S|1|0.41|ENSG00000118900|chr16:4876994-4876994|C/T|missense_variant	UBN1|p.P1050S|1|0.41|ENSG00000118900|chr16:4876994-4876994|C/T|missense_variant	UBN1|p.P1050S|1|0.41|ENSG00000118900|chr16:4876994-4876994|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	354.9222717285156	3	354.54997	1060.62808	0.0059898	2.1237E-06	-0.46377	-0.00016443	-0.45778	-0.00016231	354.5494229015426	46.172	0.20218	46.172	46.043	46.245	0					6	3	2	0	0	0	0.93799	1	16158	16158		1.7423	1.5064	1	472410			23252	30108	16909	17027	22801	22801					0.10019192891104467
ITQGTPLKY	9	Unmodified	_ITQGTPLKY_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	A375_MHC_IP_R1	1	511.1896057128906	2	510.78985	1019.56515	-0.69598	-0.0003555	0.29029	0.00014827	-0.4057	-0.00020723	510.78995507991874	37.995	0.66229	37.995	37.761	38.423	0					37	12	4	0	0	0	0.0085482	1	12825	12825		128.57	39.172	1	69962000			23253	9048	16910	17028	22802	22802					0.056146271030456774
ITQGTPLKY	9	Unmodified	_ITQGTPLKY_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-SECPEP	A375_MHC_IP_R2	2	510.6341247558594	2	510.78985	1019.56515	-1.2849	-0.00065633	0.4871	0.00024881	-0.79782	-0.00040752	510.79001882061766	37.224	0.86547	37.995	37.716	38.581	0.7709					50	16	6	0	0	0	0.010905	1	13574	13574		151.48	62.079	1	74482000			23254	9048	16910	17028	22803	22803					0.056146271030456774
ITQIEHEVSSS	11	Unmodified	_ITQIEHEVSSS_					0	0	0		ENSG00000171403|ENST00000246662|KRT9;CON__P35527	ENSG00000171403|ENST00000246662|KRT9	ENSG00000171403|ENST00000246662|KRT9	MULTI-MSMS	A375_MHC_IP_R1	1	615.7037963867188	2	615.304049	1228.59355	-0.42944	-0.00026423	-0.017853	-1.0985E-05	-0.44729	-0.00027522	615.3041413677856	28.848	0.35299	28.848	28.643	28.996	0					15	6	3	0	0	0	0.00028404	1	8967	8967		125.66	76.129	1	3133600		+	23255	600	16911	17029	22804	22804					-0.01160719778317798
ITQIEHEVSSS	11	Unmodified	_ITQIEHEVSSS_					0	0	0		ENSG00000171403|ENST00000246662|KRT9;CON__P35527	ENSG00000171403|ENST00000246662|KRT9	ENSG00000171403|ENST00000246662|KRT9	MULTI-MSMS	A375_MHC_IP_R2	2	615.7034301757812	2	615.304049	1228.59355	-0.87127	-0.00053609	0.62059	0.00038185	-0.25067	-0.00015424	615.3046258059345	28.175	0.40562	28.853	28.706	29.112	0.67857					11	7	2	0	0	0	0.0003102	1	9726	9726		121.93	72.375	1	3897700		+	23256	600	16911	17029	22805	22805					-0.01160719778317798
ITQLKDGLKN	10	Unmodified	_ITQLKDGLKN_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-SECPEP	A375_MHC_IP_R1	1	376.932861328125	3	377.224034	1128.65027	0.15653	5.9047E-05	-0.67962	-0.00025637	-0.52309	-0.00019732	377.2237942941766	32.957	0.70646	32.957	32.383	33.09	0					18	13	3	0	0	0	0.92445	1	10662	10662		14.218	6.2728	1	2190100			23257	3337	16912	17030	22806	22806					0.09109372568855179
ITQLRGTN	8	Unmodified	_ITQLRGTN_					0	0	0			REV__ENST00000522092.5_2_8:772178-1087480:+|nuORF	REV__ENST00000522092.5_2_8:772178-1087480:+|nuORF	MSMS	A375_MHC_IP_R2	2	451.6764831542969	2	451.756341	901.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.499	1	51.253	50.753	51.753	0.75406								0	0	0	0.097939	1	18992	18992		64.236	15.89	1		+		23258	25725	16913	17031	22807	22807					0.04344016611935331
ITQPFNTSV	9	Unmodified	_ITQPFNTSV_					0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	MULTI-SECPEP	A375_MHC_IP_R1	1	503.1688232421875	2	503.763832	1005.51311	-0.37161	-0.0001872	-0.38886	-0.00019589	-0.76047	-0.0003831	503.76364252917546	77.562	0.40419	77.562	77.235	77.639	0					12	7	2	0	0	0	0.69507	1	28242	28242		5.7319	5.7319	1	1203900	+		23259	16329	16914	17032	22808	22808					0.010574636892897615
ITQQFHEMR	9	Unmodified	_ITQQFHEMR_					0	0	0			REV__ENST00000374902.8_1_9:103111467-103111593:-|nuORF	REV__ENST00000374902.8_1_9:103111467-103111593:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	397.94500732421875	3	397.197602	1188.57098	0.0011837	4.7017E-07	-1.1168	-0.00044358	-1.1156	-0.00044311	397.19690951822537	47.658	0.30287	47.658	47.567	47.87	0					7	5	2	0	0	0	0.77396	1	16779	16779		1.9064	0	1	599690	+		23260	24118	16915	17033	22809	22809					-0.01576597656935519
ITQQKLKAL	9	Unmodified	_ITQQKLKAL_					0	0	0			REV__ENST00000439908.1_1_X:18884431-18884560:+|nuORF	REV__ENST00000439908.1_1_X:18884431-18884560:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	522.2341918945312	2	521.834591	1041.65463	-0.55732	-0.00029083	0.26889	0.00014031	-0.28843	-0.00015051	521.8345810287051	58.353	0.40522	58.353	58.126	58.531	0					13	7	2	0	0	0	0.53748	1	20971	20971		18.146	0	1	2167100	+		23261	24793	16916	17034	22810	22810					0.13546881782417586
ITQQKLKAL	9	Unmodified	_ITQQKLKAL_					0	0	0			REV__ENST00000439908.1_1_X:18884431-18884560:+|nuORF	REV__ENST00000439908.1_1_X:18884431-18884560:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	522.2344360351562	2	521.834591	1041.65463	-0.9833	-0.00051312	0.1138	5.9385E-05	-0.86949	-0.00045373	521.8347269592355	57.193	0.35808	57.943	57.763	58.121	0.75015					10	6	2	0	0	0	0.53748	1	21660	21660		13.042	0	1	2434000	+		23262	24793	16916	17034	22811	22811					0.13546881782417586
ITRARQLRWIR	11	Unmodified	_ITRARQLRWIR_					0	0	0			REV__nc|ENSG00000167723|Q8NET8-3|TRPV3	REV__nc|ENSG00000167723|Q8NET8-3|TRPV3	MSMS	A375_MHC_IP_R2	2	734.8740234375	2	734.952218	1467.88988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.39	1	115.1	114.6	115.6	0.70985								0	0	0	0.16334	1	43124	43124		1.3295	0	1		+		23263	20788	16917	17035	22812	22812					0.17465412030537664
ITRARVEFN	9	Unmodified	_ITRARVEFN_					0	0	0		nc|ENSG00000165164|Q6ZTR5-6|CFAP47;ENSG00000165164|ENST00000378653|CFAP47	nc|ENSG00000165164|Q6ZTR5-6|CFAP47	nc|ENSG00000165164|Q6ZTR5-6|CFAP47	MULTI-SECPEP	A375_MHC_IP_R1	1	368.6049499511719	3	369.208607	1104.60399	-0.043847	-1.6189E-05	0.33024	0.00012193	0.28639	0.00010574	369.20872440888314	30.326	0.55392	30.326	30.049	30.603	0					16	10	2	0	0	0	0.75842	1	9720	9720		5.7834	1.9071	1	2669200			23264	6922	16918	17036	22813	22813					0.055873524574280964
ITREYIPKI	9	Unmodified	_ITREYIPKI_					0	0	0		ENSG00000082438|ENST00000652658|COBLL1;nc|ENSG00000082438|Q53SF7-3|COBLL1;nc|ENSG00000082438|Q53SF7-2|COBLL1	ENSG00000082438|ENST00000652658|COBLL1	ENSG00000082438|ENST00000652658|COBLL1	MULTI-SECPEP	A375_MHC_IP_R2	2	378.2767333984375	3	378.229008	1131.66519	0.097149	3.6744E-05	0.8632	0.00032649	0.96035	0.00036323	378.2294121146135	39.665	0.40676	40.439	40.269	40.676	0.77451					10	7	2	0	0	0	0.78353	1	14592	14592		3.5871	1.0886	1	1334700			23265	1758	16919	17037	22814	22814					0.10462864436840391
ITREYIPKI	9	Unmodified	_ITREYIPKI_					0	0	0		ENSG00000082438|ENST00000652658|COBLL1;nc|ENSG00000082438|Q53SF7-3|COBLL1;nc|ENSG00000082438|Q53SF7-2|COBLL1	ENSG00000082438|ENST00000652658|COBLL1	ENSG00000082438|ENST00000652658|COBLL1	MULTI-MATCH	A375_MHC_IP_R1	1		3	378.229008	1131.66519	0.32911	0.00012448	0.011486	4.3445E-06	0.34059	0.00012882	378.56373119575545	40.838	0.25253	40.838	40.66	40.913	0	0.19938	-0.00087197	NaN	6.1918	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1186800			23266	1758	16919	17037							0.10462864436840391
ITRIKAGIN	9	Unmodified	_ITRIKAGIN_					0	0	0		ENSG00000162924|ENST00000394479|REL;nc|ENSG00000162924|Q04864|REL	ENSG00000162924|ENST00000394479|REL	ENSG00000162924|ENST00000394479|REL	MULTI-SECPEP	A375_MHC_IP_R1	1	493.71099853515625	2	493.311284	984.608014	-0.51113	-0.00025214	0.33432	0.00016492	-0.17681	-8.7221E-05	493.31138437347795	41.038	0.40316	41.038	40.863	41.266	0					13	7	2	0	0	0	0.60917	1	14167	14167		13.906	0	1	6468500			23267	6614	16920	17038	22815	22815					0.11509441951125154
ITRLQSGIDF	10	Unmodified	_ITRLQSGIDF_					0	0	0		ENSG00000221909|ENST00000449309|FAM200A;ENSG00000237765|ENST00000422728|FAM200B	ENSG00000221909|ENST00000449309|FAM200A;ENSG00000237765|ENST00000422728|FAM200B	ENSG00000237765|ENST00000422728|FAM200B	MULTI-SECPEP	A375_MHC_IP_R2	2	575.1312866210938	2	575.316763	1148.61897	-0.23984	-0.00013798	-1.7759	-0.0010217	-2.0157	-0.0011597	575.3154657364433	72.936	0.55866	73.672	73.328	73.887	0.7354					13	10	2	0	0	0	0.91516	1	27612	27612		15.248	0	1	1096300			23268	9671;9760	16921	17039	22816	22816					0.05060799534749094
ITRMFKVKK	9	Unmodified	_ITRMFKVKK_					0	0	0		ENSG00000179674|ENST00000320767|ARL14	ENSG00000179674|ENST00000320767|ARL14	ENSG00000179674|ENST00000320767|ARL14	MULTI-SECPEP	A375_MHC_IP_R2	2	383.9668884277344	3	384.242483	1149.70562	-0.16267	-6.2504E-05	0.3195	0.00012277	0.15683	6.0262E-05	384.5769559519361	32.598	0.25468	33.335	33.213	33.468	0.73691					6	4	2	0	0	0	0.80713	1	11623	11623		2.086	2.086	1	1277900			23269	8244	16922	17040	22817	22817					0.1367550755562661
ITRPEEVKH	9	Unmodified	_ITRPEEVKH_					0	0	0		ENSG00000139970|ENST00000267484|RTN1	ENSG00000139970|ENST00000267484|RTN1	ENSG00000139970|ENST00000267484|RTN1	MULTI-SECPEP	A375_MHC_IP_R1	1	369.5746154785156	3	370.208495	1107.60366	0.53735	0.00019893	-1.1681	-0.00043245	-0.63077	-0.00023352	370.54199230273474	21.326	0.15293	21.326	21.199	21.352	0					4	2	2	0	0	0	0.71071	1	5600	5600		14.405	4.2548	1	375310			23270	5118	16923	17041	22818	22818					0.0541593273756007
ITRPWALV	8	Unmodified	_ITRPWALV_					0	0	0		chr19:2236901-2243087|96|20.82|0.58|5.18|+|0|SF3A2,None|1	chr19:2236901-2243087|96|20.82|0.58|5.18|+|0|SF3A2,None|1	chr19:2236901-2243087|96|20.82|0.58|5.18|+|0|SF3A2,None|1	MULTI-MSMS	A375_MHC_IP_R2	2	478.68927001953125	2	478.28982	954.565087	-0.45582	-0.00021801	-0.62422	-0.00029856	-1.08	-0.00051657	478.2897464646069	91.616	0.76079	92.351	91.919	92.68	0.7345					29	14	3	0	0	0	0.69557	1	34849	34849		36.127	0.082828	1	3112100			23271	452	16924	17042	22819	22819					0.08598671893696519
ITRRNTFY	8	Unmodified	_ITRRNTFY_					0	0	0			REV__ANKRD36C|p.L1401*|1|0.24|ENSG00000174501|chr2:95856059-95856059|A/-|frameshift_variant;REV__ENSG00000135976|ENST00000420699|ANKRD36	REV__ANKRD36C|p.L1401*|1|0.24|ENSG00000174501|chr2:95856059-95856059|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	358.2766418457031	3	357.529569	1069.56688	-0.27638	-9.8813E-05	0.21123	7.552E-05	-0.065149	-2.3293E-05	357.52960745739824	26.376	0.40496	26.376	26.17	26.575	0					13	7	2	0	0	0	0.972	1	7804	7804		6.2058	6.2058	1	2145900	+		23272	15411;18907	16925	17043	22820	22820					0.0348768091164402
ITRSFYRN	8	Unmodified	_ITRSFYRN_					0	0	0		ENSG00000188060|ENST00000465518|RAB42	ENSG00000188060|ENST00000465518|RAB42	ENSG00000188060|ENST00000465518|RAB42	MULTI-SECPEP	A375_MHC_IP_R1	1	353.2575988769531	3	352.857686	1055.55123	-0.042105	-1.4857E-05	-0.1853	-6.5386E-05	-0.22741	-8.0243E-05	352.85761463107457	28.617	0.55591	28.617	28.44	28.996	0					17	10	2	0	0	0	0.972	1	8891	8891		5.2969	0	1	3209000			23273	8879	16926	17044	22821	22821					0.02567394394600342
ITRSRRRRRRR	11	Unmodified	_ITRSRRRRRRR_					0	0	0			REV__ENST00000586027.5_1_19:14602515-14606910:-|nuORF	REV__ENST00000586027.5_1_19:14602515-14606910:-|nuORF	MSMS	A375_MHC_IP_R2	2	784.9998168945312	2	784.998888	1567.98322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.28	1	118.89	118.39	119.39	0.60909								0	0	0	0.16354	1	44895	44895		0.30703	0.30703	1		+		23274	26381	16927	17045	22822	22822					0.2219514925632211
ITRYDICTY	9	Unmodified	_ITRYDICTY_					0	0	0		nc|ENSG00000049192|Q9UKP5-2|ADAMTS6;nc|ENSG00000049192|Q9UKP5-3|ADAMTS6;ENST00000470597.5_1_5:64558740-64769500:-|nuORF;ENSG00000049192|ENST00000381055|ADAMTS6;ENST00000381052.8_1_5:64593037-64747992:-|nuORF	nc|ENSG00000049192|Q9UKP5-2|ADAMTS6	nc|ENSG00000049192|Q9UKP5-2|ADAMTS6	MULTI-SECPEP	A375_MHC_IP_R2	2	573.678955078125	2	574.276249	1146.53795	-0.10599	-6.0865E-05	-2.2454	-0.0012895	-2.3514	-0.0013503	574.2750636124321	109.59	0.40351	110.34	110.08	110.48	0.74683					14	7	3	0	0	0	0.60917	1	41316	41316		19.257	0	1	1083400			23275	14465	16928	17046	22823	22823					-0.029462244996466325
ITSDKKSRVK	10	Unmodified	_ITSDKKSRVK_					0	0	0		KCNQ5|p.E588V|1|0.29|ENSG00000185760|chr6:73192618-73192618|A/T|missense_variant	KCNQ5|p.E588V|1|0.29|ENSG00000185760|chr6:73192618-73192618|A/T|missense_variant	KCNQ5|p.E588V|1|0.29|ENSG00000185760|chr6:73192618-73192618|A/T|missense_variant	MSMS	A375_MHC_IP_R1	1	581.7278442382812	2	581.351137	1160.68772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.92	1	141.92	141.42	142.42	0								0	0	0	0.15541	1	54460	54460		3.2813	0.28607	1				23276	14201	16929	17047	22824	22824					0.11380463834461807
ITSDNRYIL	9	Unmodified	_ITSDNRYIL_					0	0	0		nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;ENST00000515096.5_1_4:151186876-151231561:-|nuORF;ENST00000503716.5_1_4:151186876-151502511:-|nuORF	nc|ENSG00000198589|P50851-2|LRBA	nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6611938476562	2	547.795663	1093.57677	-0.53392	-0.00029248	-0.25078	-0.00013738	-0.7847	-0.00042986	547.795519761454	75.273	0.85591	75.273	74.908	75.764	0					49	16	4	0	0	0	0.24548	1	27373	27373		36.127	0	1	19923000			23277	9287	16930	17048	22825	22825					0.03372824126381602
ITSDNRYIL	9	Unmodified	_ITSDNRYIL_					0	0	0		nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;ENST00000515096.5_1_4:151186876-151231561:-|nuORF;ENST00000503716.5_1_4:151186876-151502511:-|nuORF	nc|ENSG00000198589|P50851-2|LRBA	nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	A375_MHC_IP_R2	2	547.661376953125	2	547.795663	1093.57677	-0.82572	-0.00045232	0.16714	9.1559E-05	-0.65858	-0.00036076	547.7957564320019	74.434	0.91495	75.172	74.857	75.772	0.73752					55	17	4	0	0	0	0.31606	1	28280	28280		39.95	7.164	1	24368000			23278	9287	16930	17048	22826	22826					0.03372824126381602
ITSEHSYQKP	10	Unmodified	_ITSEHSYQKP_					0	0	0		ENSG00000129292|ENST00000395386|PHF20L1;ENST00000477051.1_1_8:133854703-133858165:+|nuORF	ENSG00000129292|ENST00000395386|PHF20L1	ENSG00000129292|ENST00000395386|PHF20L1	MULTI-SECPEP	A375_MHC_IP_R2	2	595.4771118164062	2	595.296027	1188.5775	-0.62848	-0.00037413	0.18449	0.00010982	-0.44399	-0.00026431	595.2963314067669	74.798	0.96326	75.536	75.163	76.126	0.73752					49	18	5	0	0	0	0.51493	1	28412	28412		45.7	7.524	1	13233000			23279	4184	16931	17049	22827	22827					-0.009243812245813388
ITSEHSYQKP	10	Unmodified	_ITSEHSYQKP_					0	0	0		ENSG00000129292|ENST00000395386|PHF20L1;ENST00000477051.1_1_8:133854703-133858165:+|nuORF	ENSG00000129292|ENST00000395386|PHF20L1	ENSG00000129292|ENST00000395386|PHF20L1	MULTI-MATCH	A375_MHC_IP_R1	1		2	595.296027	1188.5775	-0.39381	-0.00023443	0.20302	0.00012086	-0.19078	-0.00011357	595.2962335963105	75.539	0.704	75.539	75.262	75.966	0	0.0015072	7.0722E-06	NaN	45.7	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11179000			23280	4184	16931	17049							-0.009243812245813388
ITSFGAVFSH	10	Unmodified	_ITSFGAVFSH_					0	0	0		ENST00000368069.7_1_1:160305060-160310036:-|nuORF	ENST00000368069.7_1_1:160305060-160310036:-|nuORF	ENST00000368069.7_1_1:160305060-160310036:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	533.6715698242188	2	533.271824	1064.5291	-0.64208	-0.0003424	-0.11243	-5.9956E-05	-0.75451	-0.00040236	533.2718537763617	61.661	4.3893	61.661	61.176	65.565	0					222	85	5	0	0	0	0.66308	1	23300	23300		16.149	5.3496	1	1146700000			23281	11105	16932	17050	22828	22828					-0.0005883007379452465
ITSFKSFI	8	Unmodified	_ITSFKSFI_					0	0	0		ENST00000395879.5_2_7:43680244-43687232:-|nuORF	ENST00000395879.5_2_7:43680244-43687232:-|nuORF	ENST00000395879.5_2_7:43680244-43687232:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	471.64752197265625	2	471.768386	941.522219	-0.38435	-0.00018132	0.51956	0.00024511	0.13521	6.3788E-05	471.7685708831725	103.97	0.56174	103.97	103.72	104.29	0					12	10	2	0	0	0	0.86263	1	38215	38215		26.884	8.7487	1	1573400			23282	11481	16933	17051	22829	22829					0.049118570456244015
ITSFKSFI	8	Unmodified	_ITSFKSFI_					0	0	0		ENST00000395879.5_2_7:43680244-43687232:-|nuORF	ENST00000395879.5_2_7:43680244-43687232:-|nuORF	ENST00000395879.5_2_7:43680244-43687232:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	471.768386	941.522219	-0.56908	-0.00026847	-0.74061	-0.0003494	-1.3097	-0.00061787	471.7683311239534	102.98	0.5089	103.74	103.48	103.99	0.76428	-0.11661	-0.00074121	NaN	26.884	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	939840			23283	11481	16933	17051							0.049118570456244015
ITSIQGLRDG	10	Unmodified	_ITSIQGLRDG_					0	0	0			REV__ENST00000596494.1_1_19:18648927-18650245:-|nuORF	REV__ENST00000596494.1_1_19:18648927-18650245:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	530.6921997070312	2	530.293288	1058.57202	-0.25356	-0.00013446	-0.4997	-0.00026499	-0.75326	-0.00039945	530.7949350313178	126.22	1.5133	126.22	125.65	127.16	0					47	29	3	0	0	0	0.70651	1	48029	48029		9.3831	1.473	1	11307000	+		23284	26473	16934	17052	22830	22830					0.04507939983614051
ITSIYLINRL	10	Unmodified	_ITSIYLINRL_					0	0	0			REV__OR2T27|p.D70N|1|0.27|ENSG00000187701|chr1:248650677-248650677|C/T|missense_variant	REV__OR2T27|p.D70N|1|0.27|ENSG00000187701|chr1:248650677-248650677|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	402.6168518066406	3	402.579929	1204.71796	0.0095769	3.8555E-06	0.048103	1.9366E-05	0.05768	2.3221E-05	402.57995843060684	74.05	0.55973	74.788	74.449	75.009	0.73752					18	10	2	0	0	0	0.70496	1	27980	27980		5.7834	1.9071	1	1979200	+		23285	27665	16935	17053	22831	22831					0.12378822499681519
ITSKINAI	8	Unmodified	_ITSKINAI_					0	0	0		ENSG00000162620|ENST00000354431|LRRIQ3;nc|ENSG00000162620|A6PVS8-2|LRRIQ3	ENSG00000162620|ENST00000354431|LRRIQ3	ENSG00000162620|ENST00000354431|LRRIQ3	MULTI-SECPEP	A375_MHC_IP_R1	1	430.66619873046875	2	430.26601	858.517468	-0.060648	-2.6095E-05	0.15285	6.5767E-05	0.092204	3.9672E-05	430.26602200750824	62.971	0.56356	62.971	62.66	63.223	0					15	10	2	0	0	0	0.64636	1	22775	22775		42.095	0	1	1318000			23286	6564	16936	17054	22832	22832					0.08254972902852842
ITSKQNKGYSY	11	Unmodified	_ITSKQNKGYSY_					0	0	0		tr|U7SUC4|U7SUC4_FUSNUCBSdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01375PE=4SV=1	tr|U7SUC4|U7SUC4_FUSNUCBSdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01375PE=4SV=1	tr|U7SUC4|U7SUC4_FUSNUCBSdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01375PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	430.62225341796875	3	430.222582	1287.64592	-0.6187	-0.00026618	-0.15456	-6.6495E-05	-0.77326	-0.00033267	430.22250854904985	57.158	0.4584	57.908	57.612	58.07	0.75014					13	8	2	0	0	0	0.65374	1	21581	21581		19.144	3.6055	1	2229200			23287	29756	16937	17055	22833	22833					0.013598633552874162
ITSKQNKGYSY	11	Unmodified	_ITSKQNKGYSY_					0	0	0		tr|U7SUC4|U7SUC4_FUSNUCBSdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01375PE=4SV=1	tr|U7SUC4|U7SUC4_FUSNUCBSdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01375PE=4SV=1	tr|U7SUC4|U7SUC4_FUSNUCBSdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01375PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	430.222582	1287.64592	-0.16697	-7.1833E-05	-0.19456	-8.3705E-05	-0.36153	-0.00015554	430.2225253726267	57.949	0.5581	57.949	57.568	58.126	0	0.020557	-2.0434E-05	NaN	19.144	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4803400			23288	29756	16937	17055							0.013598633552874162
ITSKQNKGYSY	11	Unmodified	_ITSKQNKGYSY_					0	0	0		tr|U7SUC4|U7SUC4_FUSNUCBSdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01375PE=4SV=1	tr|U7SUC4|U7SUC4_FUSNUCBSdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01375PE=4SV=1	tr|U7SUC4|U7SUC4_FUSNUCBSdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01375PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	430.222582	1287.64592	-0.6187	-0.00026618	-0.15456	-6.6495E-05	-0.77326	-0.00033267	430.22250854904985	57.158	0.4584	57.908	57.612	58.07	0.75014	-0.020557	3.1195E-05	NaN	19.144	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2229200			23289	29756	16937	17055							0.013598633552874162
ITSKYATRI	9	Unmodified	_ITSKYATRI_					0	0	0			REV__nc|ENSG00000196975|P09525|ANXA4	REV__nc|ENSG00000196975|P09525|ANXA4	MULTI-MSMS	A375_MHC_IP_R1	1	527.3739624023438	2	526.808574	1051.60259	-0.4534	-0.00023886	-1.3253	-0.00069819	-1.7787	-0.00093704	526.8084662433816	102.64	0.80814	102.64	102.15	102.96	0					39	15	4	0	0	0	0.63811	1	37814	37814		12.532	0	1	2754200	+		23290	22244	16938	17056	22834	22834					0.07885718368652306
ITSLERHRKK	10	Unmodified	_ITSLERHRKK_					0	0	0		TAS2R60|p.G221E|1|0.4|ENSG00000185899|chr7:143444114-143444114|G/A|missense_variant	TAS2R60|p.G221E|1|0.4|ENSG00000185899|chr7:143444114-143444114|G/A|missense_variant	TAS2R60|p.G221E|1|0.4|ENSG00000185899|chr7:143444114-143444114|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	634.4465942382812	2	634.383303	1266.75205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.74	1	136.74	136.24	137.24	0								0	0	0	0.15591	1	52660	52660		1.6526	0	1				23291	29301	16939	17057	22835	22835					0.129346637112576
ITSMAMVDY	9	Unmodified	_ITSMAMVDY_					0	0	0		ENSG00000151224|ENST00000372213|MAT1A	ENSG00000151224|ENST00000372213|MAT1A	ENSG00000151224|ENST00000372213|MAT1A	MSMS	A375_MHC_IP_R2	2	515.6637573242188	2	515.732828	1029.4511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.019	1	58.768	58.268	59.268	0.74894								0	0	0	0.15486	1	21945	21945		11.64	3.047	1				23292	5887	16940	17058	22836	22836					-0.062443470457083095
ITSNTLIYY	9	Unmodified	_ITSNTLIYY_					0	0	0		nc|ENSG00000105483|Q9Y2G2-3|CARD8;ENSG00000105483|ENST00000651546|CARD8;nc|ENSG00000105483|Q9Y2G2-4|CARD8;nc|ENSG00000105483|Q9Y2G2-2|CARD8;ENST00000377461.8_1_19:48718626-48735356:-|nuORF;ENST00000517510.5_1_19:48707456-48744240:-|nuORF;ENST00000522773.5_1_19:48714969-48736545:-|nuORF;nc|ENSG00000105483|Q9Y2G2-7|CARD8;ENST00000522051.5_1_19:48714969-48735770:-|nuORF;nc|ENSG00000105483|Q9Y2G2-1|CARD8	nc|ENSG00000105483|Q9Y2G2-3|CARD8	nc|ENSG00000105483|Q9Y2G2-3|CARD8	MULTI-SECPEP	A375_MHC_IP_R2	2	544.6387329101562	2	544.28714	1086.55973	-0.62363	-0.00033943	0.31488	0.00017138	-0.30875	-0.00016805	544.7889940759992	46.823	0.25278	47.584	47.462	47.715	0.76128					7	4	2	0	0	0	0.71341	1	17578	17578		13.042	1.4022	1	927600			23293	2609	16941	17059	22837	22837					0.019909035205728287
ITSPVLIIHGT	11	Unmodified	_ITSPVLIIHGT_					0	0	0		ENSG00000107362|ENST00000333421|ABHD17B;nc|ENSG00000107362|Q5VST6-2|ABHD17B;ENSG00000129968|ENST00000292577|ABHD17A;nc|ENSG00000129968|Q96GS6-2|ABHD17A	ENSG00000107362|ENST00000333421|ABHD17B;ENSG00000129968|ENST00000292577|ABHD17A	ENSG00000107362|ENST00000333421|ABHD17B	MULTI-MSMS	A375_MHC_IP_R2	2	384.9211730957031	3	384.23253	1149.67576	0.045594	1.7519E-05	-0.20228	-7.7721E-05	-0.15668	-6.0202E-05	384.2324765404542	46.666	0.40674	47.428	47.207	47.614	0.76203					16	7	3	0	0	0	0.72649	1	17480	17480		6.6235	2.7775	1	1215900			23294	2736;4217	16942	17060	22838	22838					0.10690847091291289
ITSPVLIIHGT	11	Unmodified	_ITSPVLIIHGT_					0	0	0		ENSG00000107362|ENST00000333421|ABHD17B;nc|ENSG00000107362|Q5VST6-2|ABHD17B;ENSG00000129968|ENST00000292577|ABHD17A;nc|ENSG00000129968|Q96GS6-2|ABHD17A	ENSG00000107362|ENST00000333421|ABHD17B;ENSG00000129968|ENST00000292577|ABHD17A	ENSG00000107362|ENST00000333421|ABHD17B	MULTI-MATCH	A375_MHC_IP_R1	1		3	384.23253	1149.67576	0.39623	0.00015224	0.13094	5.0311E-05	0.52717	0.00020256	384.23262308884017	47.645	0.35255	47.645	47.467	47.819	0	0.10872	0.00014085	NaN	6.6235	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1522500			23295	2736;4217	16942	17060							0.10690847091291289
ITSQDVLHSW	10	Unmodified	_ITSQDVLHSW_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	A375_MHC_IP_R1	1	593.6981811523438	2	593.29857	1184.58259	-0.36962	-0.00021929	0.1445	8.5734E-05	-0.22512	-0.00013356	593.2986396787372	75.54	2.176	75.54	75.16	77.336	0					105	42	4	0	0	0	3.0522E-05	2	27448	27448;27655		163.69	104.32	1	193850000			23296	9304	16943	17061	22839;22840	22839					-0.002320773619430838
ITSQDVLHSW	10	Unmodified	_ITSQDVLHSW_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	A375_MHC_IP_R2	2	593.6982421875	2	593.29857	1184.58259	-0.62748	-0.00037228	0.14994	8.8957E-05	-0.47754	-0.00028333	593.2986688237489	74.806	2.1349	75.543	75.163	77.298	0.73751					103	41	4	0	0	0	3.2709E-05	1	28322	28322		176.43	125.01	1	211840000			23297	9304	16943	17061	22841	22841					-0.002320773619430838
ITSQVTGQIGW	11	Unmodified	_ITSQVTGQIGW_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000461733.5_1_3:183898306-183901401:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF;ENST00000468048.5_1_3:183898306-183899072:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MULTI-SECPEP	A375_MHC_IP_R1	1	595.7140502929688	2	595.31422	1188.61389	-0.28707	-0.0001709	-0.17234	-0.0001026	-0.45941	-0.00027349	595.3141476870929	88.536	1.1181	88.536	88.205	89.323	0					37	21	3	0	0	0	0.025691	1	32458	32458		103.82	73.983	1	8071600			23298	6467	16944	17062	22842	22842					0.02712495672130899
ITSQVTGQIGW	11	Unmodified	_ITSQVTGQIGW_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000461733.5_1_3:183898306-183901401:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF;ENST00000468048.5_1_3:183898306-183899072:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MULTI-SECPEP	A375_MHC_IP_R2	2	595.714599609375	2	595.31422	1188.61389	-0.4887	-0.00029093	0.077121	4.5911E-05	-0.41157	-0.00024502	595.314355045954	87.848	0.86176	88.58	88.266	89.128	0.7318					32	16	3	0	0	0	0.14752	1	33410	33410		46.022	28.58	1	7655700			23299	6467	16944	17062	22843	22843					0.02712495672130899
ITSSKRSFPD	10	Unmodified	_ITSSKRSFPD_					0	0	0			REV__DZIP1|p.P669S|1|0.19|ENSG00000134874|chr13:95589176-95589176|G/A|missense_variant	REV__DZIP1|p.P669S|1|0.19|ENSG00000134874|chr13:95589176-95589176|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	570.2267456054688	2	569.29857	1136.58259	-0.69837	-0.00039758	4.1164	0.0023435	3.4181	0.0019459	569.3011428697404	52.201	0.45803	52.953	52.574	53.032	0.75225					17	8	3	0	0	0	0.62155	1	19630	19630		19.257	2.1441	1	7350100	+		23300	16052	16945	17063	22844	22844					0.01975922638052907
ITSSSTKRS	9	Unmodified	_ITSSSTKRS_					0	0	0			REV__nc|ENSG00000151687|Q7Z5J8-4|ANKAR	REV__nc|ENSG00000151687|Q7Z5J8-4|ANKAR	MULTI-SECPEP	A375_MHC_IP_R1	1	484.18438720703125	2	483.764363	965.514173	-0.40306	-0.00019499	0.9552	0.00046209	0.55213	0.0002671	483.7648024285664	94.334	0.8111	94.334	93.89	94.701	0					31	15	3	0	0	0	0.4261	1	34671	34671		30.637	30.637	1	2390500	+		23301	19765	16946	17064	22845	22845					0.03003678058200876
ITSSSTKRS	9	Unmodified	_ITSSSTKRS_					0	0	0			REV__nc|ENSG00000151687|Q7Z5J8-4|ANKAR	REV__nc|ENSG00000151687|Q7Z5J8-4|ANKAR	MULTI-MATCH	A375_MHC_IP_R2	2		2	483.764363	965.514173	-0.46018	-0.00022262	1.9406	0.00093881	1.4805	0.0007162	483.76529541173625	93.457	0.96512	94.202	93.802	94.768	0.74474	-0.06589	0.00024787	NaN	30.637	30	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3259600	+		23302	19765	16946	17064							0.03003678058200876
ITSTEFNFRI	10	Unmodified	_ITSTEFNFRI_					0	0	0			REV__ENST00000469733.5_1_1:2129472-2132643:-|nuORF	REV__ENST00000469733.5_1_1:2129472-2132643:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	410.6363220214844	3	409.883789	1226.62954	-0.1744	-7.1484E-05	-1.1974	-0.00049081	-1.3718	-0.00056229	410.21888468058864	41.337	0.81379	42.112	41.845	42.659	0.77451					19	15	2	0	0	0	0.93041	1	15329	15329		11.518	0	1	1845900	+		23303	25097	16947	17065	22846	22846					0.025287821891879503
ITSVTAITV	9	Unmodified	_ITSVTAITV_					0	0	0		nc|ENSG00000014919|Q7KZN9-2|COX15;ENSG00000014919|ENST00000016171|COX15	nc|ENSG00000014919|Q7KZN9-2|COX15	nc|ENSG00000014919|Q7KZN9-2|COX15	MULTI-MSMS	A375_MHC_IP_R1	1	904.9349365234375	1	904.534975	903.527698	-0.14468	-0.00013087	0.051754	4.6813E-05	-0.092924	-8.4053E-05	904.5349688046842	91.68	1.6735	91.68	91.299	92.973	0					63	32	3	0	0	0	0.034481	1	34043	34043		71.134	6.8973	1	24837000			23304	1032	16948	17066	22847	22847					0.0720753583741498
ITSWPDSRDL	10	Unmodified	_ITSWPDSRDL_					0	0	0		CNR2|p.P348S|1|0.47|ENSG00000188822|chr1:23874576-23874576|G/A|missense_variant	CNR2|p.P348S|1|0.47|ENSG00000188822|chr1:23874576-23874576|G/A|missense_variant	CNR2|p.P348S|1|0.47|ENSG00000188822|chr1:23874576-23874576|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	595.6958618164062	2	595.296027	1188.5775	-0.68704	-0.00040899	0.32427	0.00019303	-0.36277	-0.00021596	595.2965300669164	67.148	0.66449	67.148	66.938	67.603	0					22	12	3	0	0	0	0.51493	1	24359	24359		45.7	3.86	1	2988800			23305	549	16949	17067	22848	22848					-0.009243812245813388
ITSWPDSRDL	10	Unmodified	_ITSWPDSRDL_					0	0	0		CNR2|p.P348S|1|0.47|ENSG00000188822|chr1:23874576-23874576|G/A|missense_variant	CNR2|p.P348S|1|0.47|ENSG00000188822|chr1:23874576-23874576|G/A|missense_variant	CNR2|p.P348S|1|0.47|ENSG00000188822|chr1:23874576-23874576|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	595.6957397460938	2	595.296027	1188.5775	-0.68881	-0.00041005	0.48134	0.00028654	-0.20747	-0.00012351	595.2964030372907	66.478	0.8163	67.214	66.831	67.648	0.73631					21	15	2	0	0	0	0.51493	1	25214	25214		45.7	3.86	1	3319000			23306	549	16949	17067	22849	22849					-0.009243812245813388
ITTDLAHIQ	9	Unmodified	_ITTDLAHIQ_					0	0	0		nc|ENSG00000221986|A2RUH7-2|MYBPHL;ENSG00000221986|ENST00000357155|MYBPHL	nc|ENSG00000221986|A2RUH7-2|MYBPHL	nc|ENSG00000221986|A2RUH7-2|MYBPHL	MULTI-SECPEP	A375_MHC_IP_R1	1	505.6401672363281	2	506.277106	1010.53966	-0.053199	-2.6934E-05	-0.78996	-0.00039994	-0.84316	-0.00042687	506.7778701293264	45.454	0.45334	45.454	45.081	45.534	0					10	8	2	0	0	0	0.73008	1	15896	15896		12.241	0	1	690580			23307	9679	16950	17068	22850	22850					0.034811525806162535
ITTDVLYTI	9	Unmodified	_ITTDVLYTI_					0	0	0		ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF	ENSG00000104824|ENST00000221419|HNRNPL	ENSG00000104824|ENST00000221419|HNRNPL	MULTI-SECPEP	A375_MHC_IP_R2	2	520.1890258789062	2	519.789515	1037.56448	-0.44228	-0.00022989	0.44347	0.00023051	0.0011919	6.1956E-07	519.7895687080929	112.97	0.46006	113.69	113.48	113.94	0.72458					13	8	2	0	0	0	0.05755	1	42616	42616		81.613	10.479	1	2853500			23308	2539	16951	17069	22851	22851					0.04719787663339048
ITTEKGLW	8	Unmodified	_ITTEKGLW_					0	0	0			REV__ENSG00000205186|ENST00000379071|FABP9	REV__ENSG00000205186|ENST00000379071|FABP9	MULTI-MSMS	A375_MHC_IP_R1	1	474.66326904296875	2	474.263468	946.512382	-0.35829	-0.00016992	-0.013022	-6.176E-06	-0.37131	-0.0001761	474.26338183982125	56.372	0.76204	56.372	55.991	56.753	0					21	14	2	0	0	0	0.15393	1	20177	20177		85.272	3.3818	1	4133000	+		23309	22561	16952	17070	22852	22852					0.03698669040238656
ITTEKGLW	8	Unmodified	_ITTEKGLW_					0	0	0			REV__ENSG00000205186|ENST00000379071|FABP9	REV__ENSG00000205186|ENST00000379071|FABP9	MULTI-MSMS	A375_MHC_IP_R2	2	474.6632080078125	2	474.263468	946.512382	-0.62756	-0.00029763	-0.060676	-2.8776E-05	-0.68823	-0.0003264	474.26340314188127	55.562	0.5567	56.312	55.933	56.489	0.75075					17	10	2	0	0	0	0.53027	1	20973	20973		47.749	0	1	6424300	+		23310	22561	16952	17070	22853	22853					0.03698669040238656
ITTEKGLW	8	Unmodified	_ITTEKGLW_					0	0	0			REV__ENSG00000205186|ENST00000379071|FABP9	REV__ENSG00000205186|ENST00000379071|FABP9	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	474.263468	946.512382	-0.35829	-0.00016992	-0.013022	-6.176E-06	-0.37131	-0.0001761	474.26338183982125	56.372	0.76204	56.372	55.991	56.753	0	0.029991	2.9839E-05	NaN	85.272	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4133000	+		23311	22561	16952	17070							0.03698669040238656
ITTEKGLW	8	Unmodified	_ITTEKGLW_					0	0	0			REV__ENSG00000205186|ENST00000379071|FABP9	REV__ENSG00000205186|ENST00000379071|FABP9	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	474.263468	946.512382	-0.62756	-0.00029763	-0.060676	-2.8776E-05	-0.68823	-0.0003264	474.26340314188127	55.562	0.5567	56.312	55.933	56.489	0.75075	-0.029991	-1.5361E-05	NaN	85.272	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6424300	+		23312	22561	16952	17070							0.03698669040238656
ITTEKLKFL	9	Unmodified	_ITTEKLKFL_					0	0	0			REV__ENST00000508483.1_1_4:175237641-175237719:+|nuORF	REV__ENST00000508483.1_1_4:175237641-175237719:+|nuORF	MSMS	A375_MHC_IP_R1	1	547.2000122070312	2	546.8368	1091.65905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.05	1	56.05	55.55	56.55	0								0	0	0	0.15486	1	20068	20068		12.532	4.6214	1		+		23313	25581	16953	17071	22854	22854					0.11688346205346534
ITTHHLMVY	9	Unmodified	_ITTHHLMVY_					0	0	0		nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;ENST00000528411.1_1_11:85734561-85780352:-|nuORF	nc|ENSG00000073921|Q13492-4|PICALM	nc|ENSG00000073921|Q13492-4|PICALM	MULTI-SECPEP	A375_MHC_IP_R1	1	558.1619262695312	2	557.789327	1113.5641	-0.25917	-0.00014456	-0.46494	-0.00025934	-0.72411	-0.0004039	557.7891870403658	48.081	0.75808	48.081	47.718	48.476	0					34	14	4	0	0	0	0.52144	1	16803	16803		23.148	0	1	16843000			23314	1573	16954	17072	22855	22855					0.011860894625215224
ITTKAISRW	9	Unmodified	_ITTKAISRW_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	A375_MHC_IP_R2	2	359.6131286621094	3	359.213469	1074.61858	-0.39508	-0.00014192	-0.18865	-6.7765E-05	-0.58372	-0.00020968	359.2133865096069	34.636	0.96239	35.399	35.068	36.03	0.76338					50	18	4	0	0	0	0.0095015	2	12491	12460;12491		107.56	61.824	1	131820000			23315	6668	16955	17073	22856;22857	22857					0.0842542460554796
ITTKKFQKI	9	Unmodified	_ITTKKFQKI_					0	0	0			REV__nc|ENSG00000115464|Q70CQ2-3|USP34	REV__nc|ENSG00000115464|Q70CQ2-3|USP34	MULTI-MSMS	A375_MHC_IP_R1	1	369.9149475097656	3	369.569253	1105.68593	0.48767	0.00018023	-0.16055	-5.9334E-05	0.32712	0.0001209	369.5691648757073	22.95	0.4015	22.95	22.723	23.125	0					14	7	2	0	0	0	0.73141	1	6150	6150		4.1895	1.1172	1	2407100	+		23316	17889	16956	17074	22858	22858					0.13731454816525002
ITTKKFQKI	9	Unmodified	_ITTKKFQKI_					0	0	0			REV__nc|ENSG00000115464|Q70CQ2-3|USP34	REV__nc|ENSG00000115464|Q70CQ2-3|USP34	MSMS	A375_MHC_IP_R2	2	369.62646484375	3	369.569253	1105.68593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.217	1	24.861	24.361	25.361	0.64368								0	0	0	0.15486	1	7921	7921		4.897	0.36815	1		+		23317	17889	16956	17074	22859	22859					0.13731454816525002
ITTKKPRPL	9	Unmodified	_ITTKKPRPL_					0	0	0			REV__ENST00000587708.6_1_19:36236477-36236555:+|nuORF	REV__ENST00000587708.6_1_19:36236477-36236555:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	352.29742431640625	3	351.897481	1052.67061	0.060369	2.1244E-05	-0.35215	-0.00012392	-0.29178	-0.00010268	351.8973368547817	49.837	0.71416	49.837	49.49	50.204	0					23	13	2	0	0	0	0.69317	1	17652	17652		7.609	0.50723	1	2422000	+		23318	26401	16957	17075	22860	22860					0.1463858801932929
ITTLEKHYL	9	Unmodified	_ITTLEKHYL_					0	0	0		PPFIA4|p.R304H|1|0.05|ENSG00000143847|chr1:203045893-203045893|G/A|missense_variant	PPFIA4|p.R304H|1|0.05|ENSG00000143847|chr1:203045893-203045893|G/A|missense_variant	PPFIA4|p.R304H|1|0.05|ENSG00000143847|chr1:203045893-203045893|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	559.7922973632812	2	559.316232	1116.61791	-0.6052	-0.0003385	0.1198	6.7006E-05	-0.4854	-0.00027149	559.3146248490779	87.789	0.50764	88.52	88.266	88.774	0.7318					13	9	2	0	0	0	0.73363	1	33442	33442		15.847	5.7733	1	1666700			23319	15211	16958	17076	22861	22861					0.06426585165854704
ITTLKKIRRF	10	Unmodified	_ITTLKKIRRF_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	MSMS	A375_MHC_IP_R2	2	638.18359375	2	638.416614	1274.81868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.245	1	72.979	72.479	73.479	0.73421								0	0	0	0.15531	1	27415	27415		3.5965	1.9439	1				23320	6902	16959	17077	22862	22862					0.19225899273146752
ITTNYQVRL	9	Unmodified	_ITTNYQVRL_					0	0	0			REV__ENSG00000100350|ENST00000397224|FOXRED2	REV__ENSG00000100350|ENST00000397224|FOXRED2	MULTI-MSMS	A375_MHC_IP_R2	2	370.2766418457031	3	369.876746	1106.60841	0.11737	4.3414E-05	-0.39519	-0.00014617	-0.27781	-0.00010276	369.87656040498075	34.637	0.65739	35.401	35.171	35.829	0.76338					23	12	3	0	0	0	0.57432	1	12539	12539		15.739	6.4948	1	10129000	+		23321	17080	16960	17078	22863	22863					0.05936816880330298
ITTNYQVRL	9	Unmodified	_ITTNYQVRL_					0	0	0			REV__ENSG00000100350|ENST00000397224|FOXRED2	REV__ENSG00000100350|ENST00000397224|FOXRED2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	369.876746	1106.60841	0.11737	4.3414E-05	-0.39519	-0.00014617	-0.27781	-0.00010276	369.87656040498075	34.637	0.65739	35.401	35.171	35.829	0.76338	-0.090926	0.00015526	NaN	15.739	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10129000	+		23322	17080	16960	17078							0.05936816880330298
ITTPKLEDAM	10	Unmodified	_ITTPKLEDAM_					0	0	0		nc|ENSG00000144452|Q86UK0-2|ABCA12;ENSG00000144452|ENST00000272895|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	MULTI-SECPEP	A375_MHC_IP_R2	2	373.4803466796875	3	373.530247	1117.56891	0.35752	0.00013354	-2.6587	-0.00099311	-2.3012	-0.00085957	373.8644107118617	31.231	0.30672	31.949	31.719	32.026	0.71857					6	5	2	0	0	0	0.9269	1	10983	10983		6.1918	5.0821	1	825540			23323	5487	16961	17079	22864	22864					0.014829288145847386
ITTRPGTKWV	10	Unmodified	_ITTRPGTKWV_					0	0	0			REV__nc|ENSG00000143493|Q9NVH2-4|INTS7	REV__nc|ENSG00000143493|Q9NVH2-4|INTS7	MULTI-MSMS	A375_MHC_IP_R2	2	386.9486999511719	3	386.892507	1157.65569	0.043304	1.6754E-05	-0.73846	-0.0002857	-0.69515	-0.00026895	386.8921315391583	46.781	1.2743	47.542	47.155	48.429	0.76128					54	24	4	0	0	0	0.70741	1	17394	17394		8.9762	1.0308	1	33312000	+		23324	19362	16962	17080	22865	22865					0.08317096151336045
ITTRTLKA	8	Unmodified	_ITTRTLKA_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MSMS	A375_MHC_IP_R2	2	452.3188781738281	2	452.284734	902.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.977	1	49.734	49.234	50.234	0.75737								0	0	0	0.16876	1	18396	18396		5.2307	0	1				23325	10032	16963	17081	22866	22866					0.09974064168477526
ITTRTRWVRER	11	Unmodified	_ITTRTRWVRER_					0	0	0			REV__ENSG00000134371|ENST00000367435|CDC73	REV__ENSG00000134371|ENST00000367435|CDC73	MULTI-MSMS	A375_MHC_IP_R1	1	737.8244018554688	2	737.423491	1472.83243	-0.79733	-0.00058797	2.794	0.0020604	1.9967	0.0014724	737.425606369515	133.33	0.30457	133.33	133.25	133.56	0					7	5	2	0	0	0	0.73647	1	51448	51448		2.7352	0.45242	1	4541900	+		23326	18775	16964	17082	22867	22867					0.11492525034327628
ITTRTRWVRER	11	Unmodified	_ITTRTRWVRER_					0	0	0			REV__ENSG00000134371|ENST00000367435|CDC73	REV__ENSG00000134371|ENST00000367435|CDC73	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	737.423491	1472.83243	-0.79733	-0.00058797	2.794	0.0020604	1.9967	0.0014724	737.425606369515	133.33	0.30457	133.33	133.25	133.56	0	0.028457	8.2946E-05	NaN	2.7352	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4541900	+		23327	18775	16964	17082							0.11492525034327628
ITTRTRWVRER	11	Unmodified	_ITTRTRWVRER_					0	0	0			REV__ENSG00000134371|ENST00000367435|CDC73	REV__ENSG00000134371|ENST00000367435|CDC73	MULTI-MATCH	A375_MHC_IP_R2	2		2	737.423491	1472.83243	-0.76327	-0.00056286	2.725	0.0020095	1.9618	0.0014466	737.4253799443678	133.11	0.20328	133.27	133.2	133.4	0.16487	-0.028457	-1.8785E-05	NaN	2.7352	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2317400	+		23328	18775	16964	17082							0.11492525034327628
ITTVIQHVF	9	Unmodified	_ITTVIQHVF_					0	0	0		ENSG00000153044|ENST00000283006|CENPH;ENST00000510742.1_1_5:68503946-68505623:+|nuORF	ENSG00000153044|ENST00000283006|CENPH	ENSG00000153044|ENST00000283006|CENPH	MULTI-SECPEP	A375_MHC_IP_R2	2	529.70556640625	2	529.305667	1056.59678	-0.57115	-0.00030231	0.74143	0.00039244	0.17028	9.0129E-05	529.3057902138955	77.583	0.50938	78.326	77.958	78.468	0.74293					16	9	2	0	0	0	0.047455	1	29482	29482		68.081	35.295	1	2129200			23329	6000	16965	17083	22868	22868					0.0707461985698501
ITTVIQHVF	9	Unmodified	_ITTVIQHVF_					0	0	0		ENSG00000153044|ENST00000283006|CENPH;ENST00000510742.1_1_5:68503946-68505623:+|nuORF	ENSG00000153044|ENST00000283006|CENPH	ENSG00000153044|ENST00000283006|CENPH	MULTI-MATCH	A375_MHC_IP_R1	1		2	529.305667	1056.59678	-0.39465	-0.00020889	0.23948	0.00012676	-0.15517	-8.2134E-05	529.3054804530511	78.469	0.25487	78.469	78.301	78.556	0	0.071615	-0.00033004	NaN	68.081	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1550800			23330	6000	16965	17083							0.0707461985698501
ITTVKENHY	9	Unmodified	_ITTVKENHY_					0	0	0			REV__NCAM2|p.E154K|1|0.36|ENSG00000154654|chr21:21286391-21286391|G/A|missense_variant	REV__NCAM2|p.E154K|1|0.36|ENSG00000154654|chr21:21286391-21286391|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	369.25244140625	3	368.860984	1103.56112	-0.087851	-3.2405E-05	0.35525	0.00013104	0.2674	9.8633E-05	368.86080837355524	22.815	0.91627	23.445	23.113	24.029	0.63014					40	17	4	0	0	0	0.64971	1	7293	7293		11.495	0.59575	1	8345200	+		23331	27579	16966	17084	22869	22869					0.013485376093512969
ITTVNHNKF	9	Unmodified	_ITTVNHNKF_					0	0	0			REV__ENSG00000218305|ENST00000650262|CDC14C	REV__ENSG00000218305|ENST00000650262|CDC14C	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1611328125	2	537.290548	1072.56654	-0.90424	-0.00048584	-0.11702	-6.2875E-05	-1.0213	-0.00054871	537.290622399684	31.281	0.41028	32	31.821	32.231	0.71857					12	7	2	0	0	0	0.69507	1	11003	11003		13.906	0	1	2495900	+		23332	16775	16967	17085	22870	22870					0.033162611917987306
ITVDGKPPTW	10	Unmodified	_ITVDGKPPTW_					0	0	0		ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	MULTI-MSMS	A375_MHC_IP_R1	1	557.7001342773438	2	557.300581	1112.58661	-0.57054	-0.00031796	0.23914	0.00013327	-0.33141	-0.00018469	557.3006898261033	61.041	0.4569	61.041	60.77	61.227	0					18	8	3	0	0	0	0.059572	1	22001	22001		73.196	31.102	1	3455400			23333	3865	16968	17086	22871	22871					0.03482012131757983
ITVDGKPPTW	10	Unmodified	_ITVDGKPPTW_					0	0	0		ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	MULTI-MATCH	A375_MHC_IP_R2	2		2	557.300581	1112.58661	-1.0697	-0.00059615	0.26654	0.00014854	-0.80318	-0.00044761	557.3006450456093	60.319	0.56253	61.064	60.801	61.364	0.74504	0.011344	1.7481E-05	NaN	73.196	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3984800			23334	3865	16968	17086							0.03482012131757983
ITVEKIIKI	9	Unmodified	_ITVEKIIKI_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R2	2	353.30560302734375	3	352.905754	1055.69543	-0.32919	-0.00011617	0.10659	3.7616E-05	-0.2226	-7.8558E-05	352.90575014224623	65.288	0.40574	66.026	65.817	66.222	0.73812					14	7	2	0	0	0	0.18338	1	24785	24785		39.213	4.9913	1	1838900			23335	14788	16969	17087	22872	22872					0.16981223102038712
ITVETNGSEH	10	Unmodified	_ITVETNGSEH_					0	0	0		tr|U7T5R0|U7T5R0_FUSNUthreonineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00142PE=4SV=1	tr|U7T5R0|U7T5R0_FUSNUthreonineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00142PE=4SV=1	tr|U7T5R0|U7T5R0_FUSNUthreonineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00142PE=4SV=1	MSMS	A375_MHC_IP_R1	1	543.7225341796875	2	543.756735	1085.49892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.47	1	102.47	101.97	102.97	0								0	0	0	0.15207	1	37660	37660		13.906	1.3745	1				23336	30027	16970	17088	22873	22873					-0.04041233529642341
ITVGPRGPL	9	Unmodified	_ITVGPRGPL_					0	0	0		ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	MULTI-MSMS	A375_MHC_IP_R1	1	455.6796875	2	455.279452	908.544351	-0.18063	-8.2236E-05	0.29273	0.00013328	0.1121	5.1039E-05	455.27954994656665	51.043	0.50794	51.043	50.814	51.322	0					24	9	3	0	0	0	0.033557	1	18096	18096		71.922	17.149	1	4597600			23337	3731	16971	17089	22874	22874					0.08642081514040001
ITVHPIIALL	10	Unmodified	_ITVHPIIALL_					0	0	0			REV__ENSG00000147251|ENST00000276202|DOCK11	REV__ENSG00000147251|ENST00000276202|DOCK11	MULTI-SECPEP	A375_MHC_IP_R1	1	544.7516479492188	2	545.35516	1088.69577	-0.7874	-0.00042941	0.26985	0.00014717	-0.51755	-0.00028225	545.3554191508792	132.01	0.1508	132.01	131.93	132.08	0					4	2	2	0	0	0	0.92389	1	50907	50907		11.64	0.81637	1	1067100	+		23338	19581	16972	17090	22875	22875					0.1549664282190406
ITVIGKLV	8	Unmodified	_ITVIGKLV_					0	0	0		nc|ENSG00000168356|Q9UI33-2|SCN11A;nc|ENSG00000168356|Q9UI33-3|SCN11A;ENSG00000168356|ENST00000302328|SCN11A	nc|ENSG00000168356|Q9UI33-2|SCN11A	nc|ENSG00000168356|Q9UI33-2|SCN11A	MULTI-MSMS	A375_MHC_IP_R1	1	422.18890380859375	2	421.789121	841.56369	0.099485	4.1962E-05	-0.096357	-4.0642E-05	0.0031278	1.3193E-06	421.78901282963716	88.991	0.91493	88.991	88.764	89.679	0					36	17	3	0	0	0	0.70783	1	32671	32671		32.305	5.4218	1	6031400			23339	7292	16973	17091	22876	22876					0.1365703780493277
ITVMWVLI	8	Unmodified	_ITVMWVLI_					0	0	0			REV__chr15:48139175-48141113|447|436.21|0.52|9.71|+|2|SLC24A5,SLC24A5|1	REV__chr15:48139175-48141113|447|436.21|0.52|9.71|+|2|SLC24A5,SLC24A5|1	MULTI-MSMS	A375_MHC_IP_R2	2	488.19091796875	2	487.790807	973.56706	-0.39669	-0.0001935	0.37031	0.00018063	-0.02638	-1.2868E-05	487.7908058794478	111.44	1.4831	112.18	111.6	113.08	0.73691					40	28	2	0	0	0	0.77123	1	42319	42319		14.582	0	1	2412900	+		23340	15711	16974	17092	22877	22877					0.07921964587308139
ITVNEQLP	8	Unmodified	_ITVNEQLP_					0	0	0			REV__ENST00000480574.1_1_1:45212428-45216012:+|nuORF	REV__ENST00000480574.1_1_1:45212428-45216012:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	456.6438903808594	2	457.2531	912.491647	-0.48796	-0.00022312	0.83866	0.00038348	0.3507	0.00016036	457.2535060121394	49.162	0.30463	49.919	49.741	50.046	0.75737					8	5	2	0	0	0	0.93661	1	18505	18505		21.747	6.9084	1	868480	+		23341	19330	16975	17093	22878	22878					0.031900786605774556
ITVPVIFSW	9	Unmodified	_ITVPVIFSW_					0	0	0			REV__ENSG00000144820|ENST00000273352|ADGRG7	REV__ENSG00000144820|ENST00000273352|ADGRG7	MULTI-SECPEP	A375_MHC_IP_R1	1	354.9222106933594	3	354.539182	1060.59572	-0.19088	-6.7675E-05	-1.8805	-0.00066672	-2.0714	-0.0007344	354.8730803376042	46.935	0.46169	46.935	46.749	47.211	0					17	8	3	0	0	0	0.78798	1	16576	16576		0.86438	0.79997	1	1914500	+		23342	19447	16976	17094	22879	22879					0.06784405488087941
ITVQLRRQY	9	Unmodified	_ITVQLRRQY_					0	0	0		ENSG00000109321|ENST00000395748|AREG	ENSG00000109321|ENST00000395748|AREG	ENSG00000109321|ENST00000395748|AREG	MULTI-MSMS	A375_MHC_IP_R1	1	589.1934814453125	2	588.846022	1175.67749	-0.19756	-0.00011633	0.10361	6.1011E-05	-0.093945	-5.5319E-05	588.8460420112343	35.187	0.61039	35.187	34.912	35.522	0					30	11	4	0	0	0	0.074484	1	11696	11696		67.838	25.999	1	28904000			23343	2864	16977	17095	22880	22880					0.09667900899921733
ITVQLRRQY	9	Unmodified	_ITVQLRRQY_					0	0	0		ENSG00000109321|ENST00000395748|AREG	ENSG00000109321|ENST00000395748|AREG	ENSG00000109321|ENST00000395748|AREG	MULTI-MSMS	A375_MHC_IP_R2	2	393.2646484375	3	392.899773	1175.67749	-0.47065	-0.00018492	0.27403	0.00010767	-0.19662	-7.7252E-05	392.89988045906904	34.337	0.96406	35.089	34.803	35.767	0.75225					53	18	5	0	0	0	0.073067	4	12377	12324;12350;12377;12474		55.503	23.563	1	114120000			23344	2864	16977	17095	22881;22882;22883;22884	22883					0.09667900899921733
ITVQLRRQY	9	Unmodified	_ITVQLRRQY_					0	0	0		ENSG00000109321|ENST00000395748|AREG	ENSG00000109321|ENST00000395748|AREG	ENSG00000109321|ENST00000395748|AREG	MULTI-SECPEP	A375_MHC_IP_R2	2	589.2455444335938	2	588.846022	1175.67749	-0.85144	-0.00050137	0.21423	0.00012615	-0.63721	-0.00037522	588.846116647049	34.33	0.51048	35.082	34.853	35.364	0.75225					27	9	4	0	0	0	0.49205	1	12352	12352		34.402	10.381	1	27635000			23345	2864	16977	17095	22885	22885					0.09667900899921733
ITVTDPSEP	9	Unmodified	_ITVTDPSEP_					0	0	0			REV__ENST00000559100.1_1_15:50593397-50593559:-|nuORF	REV__ENST00000559100.1_1_15:50593397-50593559:-|nuORF	MSMS	A375_MHC_IP_R2	2	479.6773681640625	2	479.740022	957.465492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.94	1	111.67	111.17	112.17	0.73692								0	0	0	0.15486	1	41840	41840		11.64	3.7301	1		+		23346	17300	16978	17096	22886	22886					-0.014942353015612753
ITVVSEKQF	9	Unmodified	_ITVVSEKQF_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-SECPEP	A375_MHC_IP_R1	1	526.1950073242188	2	525.795132	1049.57571	-0.12713	-6.6842E-05	-0.034147	-1.7954E-05	-0.16127	-8.4796E-05	525.7950597206758	48.331	0.50621	48.331	48.071	48.577	0					14	9	2	0	0	0	0.046478	1	17071	17071		92.653	32.579	1	2262200			23347	6688	16979	17097	22887	22887					0.052906097574805244
ITVVSEKQF	9	Unmodified	_ITVVSEKQF_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1946411132812	2	525.795132	1049.57571	-0.32094	-0.00016875	-0.45313	-0.00023825	-0.77407	-0.000407	525.7947105767298	47.459	0.55994	48.22	48.022	48.582	0.76128					14	10	2	0	0	0	0.090157	1	17863	17863		67.838	7.7643	1	2223900			23348	6688	16979	17097	22888	22888					0.052906097574805244
ITWCAEKKI	9	Unmodified	_ITWCAEKKI_					0	0	0			REV__ENSG00000114030|ENST00000344337|KPNA1	REV__ENSG00000114030|ENST00000344337|KPNA1	MULTI-SECPEP	A375_MHC_IP_R2	2	364.6102294921875	3	364.535444	1090.5845	-0.59303	-0.00021618	0.26087	9.5095E-05	-0.33216	-0.00012108	364.5353994483618	53.111	0.45918	53.862	53.688	54.147	0.75105					13	8	2	0	0	0	0.71541	1	20134	20134		7.609	0	1	989430	+		23349	17811	16980	17098	22889	22889					0.042832601222926314
ITWECHANL	9	Unmodified	_ITWECHANL_					0	0	0			REV__ENSG00000149090|ENST00000619888|PAMR1	REV__ENSG00000149090|ENST00000619888|PAMR1	MSMS	A375_MHC_IP_R1	1	543.7324829101562	2	543.755484	1085.49641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.353	1	84.353	83.853	84.853	0								0	0	0	0.15486	1	30892	30892		11.64	4.9171	1		+		23350	19659	16981	17099	22890	22890					-0.04291360468323546
ITWLAWRRRR	10	Unmodified	_ITWLAWRRRR_					0	0	0		ENST00000315691.7_1_3:143690776-143690935:+|nuORF	ENST00000315691.7_1_3:143690776-143690935:+|nuORF	ENST00000315691.7_1_3:143690776-143690935:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	472.6845397949219	3	471.949461	1412.82655	-0.44639	-0.00021067	3.4961	0.00165	3.0497	0.0014393	471.95181299848474	135.4	0.9682	135.54	135	135.97	0.13901					25	18	2	0	0	0	0.95032	1	53243	53243		0.12286	0	1	3119900			23351	10656	16982	17100	22891	22891					0.13665471313265698
ITWLKRPF	8	Unmodified	_ITWLKRPF_					0	0	0			REV__ENSG00000283697|ENST00000431993|HSFX3	REV__ENSG00000283697|ENST00000431993|HSFX3	MULTI-SECPEP	A375_MHC_IP_R1	1	353.6097412109375	3	354.214922	1059.62294	-0.0065606	-2.3239E-06	-1.5419	-0.00054615	-1.5484	-0.00054848	354.54975226411136	55.627	0.3585	55.627	55.431	55.79	0					12	6	3	0	0	0	0.972	1	19828	19828		0.40072	0.16487	1	816380	+		23352	22997	16983	17101	22892	22892					0.09550933819105012
ITYEQFECE	9	Unmodified	_ITYEQFECE_					0	0	0			REV__ENSG00000253729|ENST00000314191|PRKDC	REV__ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	A375_MHC_IP_R1	1	388.2305908203125	3	387.830473	1160.46959	0.43682	0.00016941	0.47919	0.00018585	0.91602	0.00035526	387.83058786182437	111.82	1.1228	111.82	111	112.13	0					37	21	3	0	0	0	0.46465	1	41002	41002		15.739	6.7624	1	3502900	+		23353	22858	16984	17102	22893	22893					-0.1042251387016222
ITYEQFECE	9	Unmodified	_ITYEQFECE_					0	0	0			REV__ENSG00000253729|ENST00000314191|PRKDC	REV__ENSG00000253729|ENST00000314191|PRKDC	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	387.830473	1160.46959	0.43682	0.00016941	0.47919	0.00018585	0.91602	0.00035526	387.83058786182437	111.82	1.1228	111.82	111	112.13	0	-0.044502	-0.00011286	NaN	15.739	37	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3502900	+		23354	22858	16984	17102							-0.1042251387016222
ITYNEAMDSP	10	Unmodified	_ITYNEAMDSP_					0	0	0		ENSG00000108256|ENST00000225388|NUFIP2;nc|ENSG00000108256|Q7Z417-2|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	MSMS	A375_MHC_IP_R1	1	570.7140502929688	2	570.747521	1139.48049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.347	1	97.347	96.847	97.847	0								0	0	0	0.15465	1	35766	35766		5.7319	0.43497	1				23355	2789	16985	17103	22894	22894					-0.08367111495886093
ITYNLHESI	9	Unmodified	_ITYNLHESI_					0	0	0		ENSG00000146350|ENST00000398212|TBC1D32;nc|ENSG00000146350|Q96NH3-4|TBC1D32	ENSG00000146350|ENST00000398212|TBC1D32	ENSG00000146350|ENST00000398212|TBC1D32	MULTI-SECPEP	A375_MHC_IP_R1	1	545.1571655273438	2	545.282389	1088.55022	-0.43226	-0.0002357	-0.55243	-0.00030123	-0.98468	-0.00053693	545.2820905521573	62.551	0.92379	62.551	62.249	63.173	0					22	17	2	0	0	0	0.62767	1	22778	22778		16.942	6.8684	1	3618200			23356	5615	16986	17104	22895	22895					0.009491352350551097
ITYQALRPDP	10	Unmodified	_ITYQALRPDP_					0	0	0		nc|ENSG00000157911|O60683-2|PEX10	nc|ENSG00000157911|O60683-2|PEX10	nc|ENSG00000157911|O60683-2|PEX10	MULTI-SECPEP	A375_MHC_IP_R2	2	392.2802429199219	3	391.880267	1172.61897	-0.42157	-0.0001652	0.3167	0.00012411	-0.10487	-4.1097E-05	391.88031942908816	30.037	0.7615	30.744	30.443	31.205	0.70741					31	14	3	0	0	0	0.91909	1	10512	10512		5.4027	3.1199	1	12493000			23357	14699	16987	17105	22896	22896					0.0395679953473973
ITYQGSLSTP	10	Unmodified	_ITYQGSLSTP_					0	0	0		ENSG00000063180|ENST00000084798|CA11	ENSG00000063180|ENST00000084798|CA11	ENSG00000063180|ENST00000084798|CA11	MSMS	A375_MHC_IP_R2	2	533.6856689453125	2	533.774396	1065.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.991	1	99.751	99.251	100.25	0.75977								0	0	0	0.14983	1	37552	37552		18.146	0	1				23358	1337	16988	17106	22897	22897					0.004094289981367183
ITYQHIDRW	9	Unmodified	_ITYQHIDRW_					0	0	0		ENST00000588299.1_1_19:39123221-39123365:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K	ENST00000588299.1_1_19:39123221-39123365:+|nuORF	ENST00000588299.1_1_19:39123221-39123365:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	411.61224365234375	3	411.212128	1230.61456	0.66251	0.00027243	-0.68065	-0.00027989	-0.018141	-7.4597E-06	411.2118235807713	44.954	0.80737	44.954	44.676	45.484	0					29	15	4	0	0	0	0.11448	1	15701	15701		48.073	29.352	1	6658700			23359	8193	16989	17107	22898	22898					0.008473351118254868
ITYQHIDRW	9	Unmodified	_ITYQHIDRW_					0	0	0		ENST00000588299.1_1_19:39123221-39123365:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K	ENST00000588299.1_1_19:39123221-39123365:+|nuORF	ENST00000588299.1_1_19:39123221-39123365:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	411.61187744140625	3	411.212128	1230.61456	0.13193	5.4252E-05	-0.64467	-0.0002651	-0.51274	-0.00021084	411.2118828336108	44.142	0.55686	44.911	44.682	45.239	0.76909					23	10	4	0	0	0	0.11448	1	16482	16482		48.073	29.352	1	6491300			23360	8193	16989	17107	22899	22899					0.008473351118254868
ITYQPSVSGEH	11	Unmodified	_ITYQPSVSGEH_					0	0	0		nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;ENSG00000143398|ENST00000368888|PIP5K1A	nc|ENSG00000143398|Q99755-4|PIP5K1A	nc|ENSG00000143398|Q99755-4|PIP5K1A	MULTI-SECPEP	A375_MHC_IP_R1	1	609.6934204101562	2	609.293485	1216.57242	-0.21301	-0.00012979	0.96073	0.00058536	0.74771	0.00045558	609.2934408697095	50.042	0.46125	50.042	49.793	50.254	0					28	8	5	0	0	0	0.73984	1	17741	17741		36.506	2.1045	1	3495000			23361	5384	16990	17108	22900	22900					-0.027206850871607458
ITYTKILQA	9	Unmodified	_ITYTKILQA_					0	0	0		GPR22|p.L345Ffs*27|1|0.34|ENSG00000172209|chr7:107475090-107475091|-/T|frameshift_variant;ENSG00000172209|ENST00000304402|GPR22	GPR22|p.L345Ffs*27|1|0.34|ENSG00000172209|chr7:107475090-107475091|-/T|frameshift_variant	GPR22|p.L345Ffs*27|1|0.34|ENSG00000172209|chr7:107475090-107475091|-/T|frameshift_variant	MSMS	A375_MHC_IP_R2	2	525.8842163085938	2	525.813325	1049.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.43	1	104.19	103.69	104.69	0.76428								0	0	0	0.15486	1	39170	39170		10.074	0.6908	1				23362	7690	16991	17109	22901	22901					0.089274866542155
ITYVGLGISI	10	Unmodified	_ITYVGLGISI_					0	0	0		nc|ENSG00000164393|Q8IZF7-2|ADGRF2P;nc|ENSG00000164393|Q8IZF7|ADGRF2P;ENSG00000153292|ENST00000371253|ADGRF1	nc|ENSG00000164393|Q8IZF7-2|ADGRF2P;ENSG00000153292|ENST00000371253|ADGRF1	nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	MULTI-SECPEP	A375_MHC_IP_R2	2	518.6949462890625	2	518.307875	1034.6012	-0.61638	-0.00031948	-0.2357	-0.00012217	-0.85209	-0.00044164	518.3078015704284	89.918	0.61354	90.649	90.391	91.004	0.7318					21	11	2	0	0	0	0.64716	1	34178	34178		29.082	5.061	1	1971000			23363	14729;6024	16992	17110	22902	22902					0.08528084279919312
IVAAEAEGIK	10	Unmodified	_IVAAEAEGIK_					0	0	0			REV__ENSG00000132589|ENST00000394908|FLOT2	REV__ENSG00000132589|ENST00000394908|FLOT2	MULTI-SECPEP	A375_MHC_IP_R1	1	500.221435546875	2	500.787307	999.560061	-0.25995	-0.00013018	-0.053111	-2.6597E-05	-0.31306	-0.00015678	500.7874727028176	47.705	0.30264	47.705	47.517	47.819	0					7	5	2	0	0	0	0.63381	1	16824	16824		10.151	0	1	1313500	+		23364	18664	16993	17111	22903	22903					0.06026323240428155
IVAAQRRP	8	Unmodified	_IVAAQRRP_					0	0	0			REV__ENST00000560493.5_1_15:100105658-100138700:+|nuORF	REV__ENST00000560493.5_1_15:100105658-100138700:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	456.1824645996094	2	455.782693	909.550834	-0.60107	-0.00027396	0.17631	8.0357E-05	-0.42477	-0.0001936	455.782684328628	142.71	0.1523	142.71	142.64	142.79	0					6	2	3	0	0	0	0.972	1	54779	54779		2.8892	2.8892	1	2841500	+		23365	26167	16994	17112	22904	22904					0.09244019465415931
IVAGGILGV	9	Unmodified	_IVAGGILGV_					0	0	0			REV__FLRT2|p.A544V|1|0.31|ENSG00000185070|chr14:85623145-85623145|C/T|missense_variant	REV__FLRT2|p.A544V|1|0.31|ENSG00000185070|chr14:85623145-85623145|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	798.4030151367188	1	798.508366	797.501089	-0.39065	-0.00031194	0.70425	0.00056235	0.3136	0.00025041	798.5087155597861	103.57	0.40711	103.57	103.37	103.78	0					11	7	2	0	0	0	0.071148	1	38028	38028		56.048	0	1	1481500	+		23366	26637	16995	17113	22905	22905					0.09423891736776113
IVAGGILGV	9	Unmodified	_IVAGGILGV_					0	0	0			REV__FLRT2|p.A544V|1|0.31|ENSG00000185070|chr14:85623145-85623145|C/T|missense_variant	REV__FLRT2|p.A544V|1|0.31|ENSG00000185070|chr14:85623145-85623145|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	799.0753173828125	1	798.508366	797.501089	-0.39065	-0.00031194	0.70425	0.00056235	0.3136	0.00025041	798.5087155597861	103.57	0.40711	103.57	103.37	103.78	0					11	7	2	0	0	0	0.090069	1	38093	38093		56.048	10.298	1	1481500	+		23367	26637	16995	17113	22906	22906					0.09423891736776113
IVAGGILGV	9	Unmodified	_IVAGGILGV_					0	0	0			REV__FLRT2|p.A544V|1|0.31|ENSG00000185070|chr14:85623145-85623145|C/T|missense_variant	REV__FLRT2|p.A544V|1|0.31|ENSG00000185070|chr14:85623145-85623145|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	798.9072875976562	1	798.508366	797.501089	-0.92751	-0.00074062	0.44256	0.00035339	-0.48494	-0.00038723	798.5083069556733	102.69	0.50893	103.46	103.12	103.63	0.76428					13	9	2	0	0	0	0.071148	1	38945	38945		56.048	10.298	1	3228100	+		23368	26637	16995	17113	22907	22907					0.09423891736776113
IVAGGILGV	9	Unmodified	_IVAGGILGV_					0	0	0			REV__FLRT2|p.A544V|1|0.31|ENSG00000185070|chr14:85623145-85623145|C/T|missense_variant	REV__FLRT2|p.A544V|1|0.31|ENSG00000185070|chr14:85623145-85623145|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	798.508366	797.501089	-0.92751	-0.00074062	0.44256	0.00035339	-0.48494	-0.00038723	798.5083069556733	102.69	0.50893	103.46	103.12	103.63	0.76428	-0.056181	-0.00015187	NaN	56.048	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3228100	+		23369	26637	16995	17113							0.09423891736776113
IVAGNKEWL	9	Unmodified	_IVAGNKEWL_					0	0	0			REV__nc|ENSG00000122378|Q9BRX8-2|PRXL2A	REV__nc|ENSG00000122378|Q9BRX8-2|PRXL2A	MULTI-SECPEP	A375_MHC_IP_R2	2	514.6583862304688	2	515.290017	1028.56548	-0.79338	-0.00040882	-0.25815	-0.00013302	-1.0515	-0.00054184	515.289971600018	67.16	1.1692	67.897	67.087	68.256	0.73631					33	22	3	0	0	0	0.62767	1	25411	25411		11.64	11.64	1	3635100	+		23370	18201	16996	17114	22908	22908					0.05234046822897653
IVAHLTGGQG	10	Unmodified	_IVAHLTGGQG_					0	0	0			REV__nc|ENSG829|Q9HDB9|ERVK-5_gag	REV__nc|ENSG829|Q9HDB9|ERVK-5_gag	MULTI-SECPEP	A375_MHC_IP_R1	1	477.1761779785156	2	476.764166	951.513779	-0.51851	-0.00024721	1.0626	0.00050661	0.54409	0.0002594	476.7646239937607	64.026	0.25306	64.026	63.837	64.09	0					7	4	2	0	0	0	0.89109	1	23090	23090		11.64	5.8799	1	847650	+		23371	27570	16997	17115	22909	22909					0.036083031289990686
IVANIVSLL	9	Unmodified	_IVANIVSLL_					0	0	0			REV__ENSG00000203485|ENST00000392634|INF2	REV__ENSG00000203485|ENST00000392634|INF2	MULTI-SECPEP	A375_MHC_IP_R2	2	471.0850830078125	2	471.305136	940.595718	-0.53596	-0.0002526	-0.16614	-7.8302E-05	-0.7021	-0.0003309	471.30499182141807	63.284	0.30545	64.024	63.885	64.191	0.74022					8	5	2	0	0	0	0.55359	1	24003	24003		28.487	9.2299	1	629210	+		23372	22462	16998	17116	22910	22910					0.12304405488100656
IVANIVSLL	9	Unmodified	_IVANIVSLL_					0	0	0			REV__ENSG00000203485|ENST00000392634|INF2	REV__ENSG00000203485|ENST00000392634|INF2	MULTI-MATCH	A375_MHC_IP_R1	1		2	471.305136	940.595718	-0.4201	-0.00019799	-0.074387	-3.5059E-05	-0.49448	-0.00023305	471.30503324691455	64.286	0.35419	64.286	64.09	64.444	0	0.13093	5.6526E-05	NaN	28.487	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	359710	+		23373	22462	16998	17116							0.12304405488100656
IVAPDADARW	10	Unmodified	_IVAPDADARW_					0	0	0		ENSG00000162695|ENST00000357650|SLC30A7	ENSG00000162695|ENST00000357650|SLC30A7	ENSG00000162695|ENST00000357650|SLC30A7	MULTI-SECPEP	A375_MHC_IP_R1	1	557.6871948242188	2	557.288005	1112.56146	-0.60797	-0.00033882	0.010716	5.9718E-06	-0.59726	-0.00033284	557.2879806494507	58.539	0.55846	58.539	58.278	58.836	0					20	9	3	0	0	0	0.67395	1	21026	21026		37.075	14.338	1	7991900			23374	6578	16999	17117	22911	22911					0.009679573291805355
IVAPDADARW	10	Unmodified	_IVAPDADARW_					0	0	0		ENSG00000162695|ENST00000357650|SLC30A7	ENSG00000162695|ENST00000357650|SLC30A7	ENSG00000162695|ENST00000357650|SLC30A7	MULTI-SECPEP	A375_MHC_IP_R2	2	556.9736938476562	2	557.288005	1112.56146	-1.0386	-0.00057878	-0.43786	-0.00024401	-1.4764	-0.0008228	557.2878453180795	57.818	0.50599	58.567	58.323	58.829	0.74894					22	9	3	0	0	0	0.83447	1	21936	21936		23.79	10.747	1	5768400			23375	6578	16999	17117	22912	22912					0.009679573291805355
IVAPGTFEV	9	Unmodified	_IVAPGTFEV_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-SECPEP	A375_MHC_IP_R1	1	467.15789794921875	2	466.758018	931.501483	-0.27793	-0.00012972	-0.15501	-7.2351E-05	-0.43293	-0.00020208	466.75791006059984	93.865	0.50431	93.865	93.686	94.191	0					17	9	2	0	0	0	0.025883	1	34524	34524		89.427	38.572	1	2326500			23376	5414	17000	17118	22913	22913					0.03299266665953837
IVAPGTFEV	9	Unmodified	_IVAPGTFEV_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-SECPEP	A375_MHC_IP_R2	2	467.1579284667969	2	466.758018	931.501483	-0.54372	-0.00025379	1.006	0.00046956	0.46228	0.00021577	466.7583204929431	93.134	0.50777	93.873	93.646	94.154	0.73902					24	9	3	0	0	0	0.016207	1	35421	35421		85.357	37.011	1	2869900			23377	5414	17000	17118	22914	22914					0.03299266665953837
IVAPTHLFLQ	10	Unmodified	_IVAPTHLFLQ_					0	0	0		ENST00000366613.1_1_1:234509546-234509989:+|nuORF;ENST00000366612.1_1_1:234509543-234509609:+|nuORF	ENST00000366613.1_1_1:234509546-234509989:+|nuORF	ENST00000366613.1_1_1:234509546-234509989:+|nuORF	MSMS	A375_MHC_IP_R2	2	569.7308349609375	2	569.834591	1137.65463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.13	1	127.4	126.9	127.9	0.26593								0	0	0	0.15038	1	49799	49799		17.113	4.0704	1				23378	11062	17001	17119	22915	22915					0.09130881782425604
IVAYHDLKNRR	11	Unmodified	_IVAYHDLKNRR_					0	0	0			REV__ENST00000498752.1_1_11:43740306-43740693:+|nuORF	REV__ENST00000498752.1_1_11:43740306-43740693:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	461.6200866699219	3	462.265115	1383.77352	-0.82733	-0.00038245	-0.81859	-0.0003784	-1.6459	-0.00076085	462.5993111914737	20.045	0.35437	20.655	20.449	20.803	0.61029					8	6	2	0	0	0	0.99945	1	6263	6263		2.2527	1.6896	1	475750	+		23379	25480	17002	17120	22916	22916					0.09698048739960541
IVCDMKPEI	9	Unmodified	_IVCDMKPEI_					0	0	0		ATP6V1G3|p.M102I|1|0.39|ENSG00000151418|chr1:198523442-198523442|C/T|missense_variant	ATP6V1G3|p.M102I|1|0.39|ENSG00000151418|chr1:198523442-198523442|C/T|missense_variant	ATP6V1G3|p.M102I|1|0.39|ENSG00000151418|chr1:198523442-198523442|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	524.1800537109375	2	524.264296	1046.51404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.17	1	133.33	132.83	133.83	0.16487								0	0	0	0.14812	1	52389	52389		24.674	7.7316	1				23380	210	17003	17121	22917	22917					-0.00735781257662893
IVDCDGCTID	10	Unmodified	_IVDCDGCTID_					0	0	0		nc|ENSG00000205531|Q99733-2|NAP1L4;ENSG00000205531|ENST00000380542|NAP1L4;ENST00000528363.5_1_11:2975753-2985939:-|nuORF	nc|ENSG00000205531|Q99733-2|NAP1L4	nc|ENSG00000205531|Q99733-2|NAP1L4	MULTI-MSMS	A375_MHC_IP_R1	1	526.6373291015625	2	527.215	1052.41545	-0.66157	-0.00034879	-1.1699	-0.00061677	-1.8314	-0.00096556	527.214879727037	91.215	0.60759	91.215	90.946	91.554	0					23	11	3	0	0	0	0.57505	1	33431	33431		22.736	7.898	1	2763900			23381	9516	17004	17122	22918	22918					-0.10866429293378133
IVDDFFIGRY	10	Unmodified	_IVDDFFIGRY_					0	0	0		ENST00000527257.1_1_11:124967504-124971231:-|nuORF;ENSG00000150433|ENST00000682305|TMEM218	ENST00000527257.1_1_11:124967504-124971231:-|nuORF	ENST00000527257.1_1_11:124967504-124971231:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	623.2185668945312	2	622.819138	1243.62372	-0.45429	-0.00028294	0.11845	7.3771E-05	-0.33584	-0.00020917	622.8192242651339	104.01	0.45934	104.01	103.72	104.18	0					17	8	3	0	0	0	0.55864	2	38214	38160;38214		33.445	16.879	1	2214300			23382	5843	17005	17123	22919;22920	22920					0.011656836775500778
IVDDFFIGRY	10	Unmodified	_IVDDFFIGRY_					0	0	0		ENST00000527257.1_1_11:124967504-124971231:-|nuORF;ENSG00000150433|ENST00000682305|TMEM218	ENST00000527257.1_1_11:124967504-124971231:-|nuORF	ENST00000527257.1_1_11:124967504-124971231:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	623.2654418945312	2	622.819138	1243.62372	-0.73114	-0.00045537	0.096395	6.0037E-05	-0.63475	-0.00039533	623.3209788252096	103.23	0.6114	103.99	103.74	104.35	0.76428					22	11	3	0	0	0	0.91796	1	39052	39052		24.991	19.259	1	2408100			23383	5843	17005	17123	22921	22921					0.011656836775500778
IVDDKFFKL	9	Unmodified	_IVDDKFFKL_					0	0	0		ENSG00000124383|ENST00000244230|MPHOSPH10;MPHOSPH10|p.S198F|1|0.36|ENSG00000124383|chr2:71133401-71133401|C/T|missense_variant	ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-MSMS	A375_MHC_IP_R1	1	375.94989013671875	3	375.549859	1123.62775	0.29825	0.00011201	0.10992	4.1279E-05	0.40816	0.00015329	375.54985503513	75.992	0.85793	75.992	75.664	76.522	0					46	16	5	0	0	0	0.027818	1	27656	27656		76.825	38.21	1	21784000			23384	3897	17006	17124	22922	22922					0.07087773171247136
IVDDKFFKL	9	Unmodified	_IVDDKFFKL_					0	0	0		ENSG00000124383|ENST00000244230|MPHOSPH10;MPHOSPH10|p.S198F|1|0.36|ENSG00000124383|chr2:71133401-71133401|C/T|missense_variant	ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-MSMS	A375_MHC_IP_R2	2	375.94989013671875	3	375.549859	1123.62775	0.23289	8.7464E-05	-0.38849	-0.0001459	-0.1556	-5.8434E-05	375.5497324149611	75.109	0.96539	75.846	75.57	76.535	0.73751					51	18	5	0	0	0	0.017727	2	28492	28492;28528		86.332	42.559	1	23745000			23385	3897	17006	17124	22923;22924	22923					0.07087773171247136
IVDEAIYY	8	Unmodified	_IVDEAIYY_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	MULTI-MSMS	A375_MHC_IP_R2	2	985.8864135742188	1	985.48769	984.480414	0.077184	7.6064E-05	-1.8791	-0.0018519	-1.8019	-0.0017758	985.4860172005402	79.693	0.50887	80.438	80.149	80.657	0.74474					14	9	2	0	0	0	0.76248	1	30304	30304		16.942	0	1	2477100			23386	2972	17007	17125	22925	22925					-0.012447434335740581
IVDEEPQLYY	10	Unmodified	_IVDEEPQLYY_					0	0	0			REV__ABHD12|p.T137I|1|0.39|ENSG00000100997|chr20:25323337-25323337|G/A|missense_variant	REV__ABHD12|p.T137I|1|0.39|ENSG00000100997|chr20:25323337-25323337|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	635.2051391601562	2	634.805894	1267.59723	-0.61994	-0.00039354	-0.54108	-0.00034348	-1.161	-0.00073702	634.8060368123774	55.667	0.45896	55.667	55.482	55.941	0					19	8	3	0	0	0	0.30287	1	19923	19923		39.95	12.321	1	7052100	+		23387	15291	17008	17126	22926	22926					-0.025860500044473156
IVDEEPQLYY	10	Unmodified	_IVDEEPQLYY_					0	0	0			REV__ABHD12|p.T137I|1|0.39|ENSG00000100997|chr20:25323337-25323337|G/A|missense_variant	REV__ABHD12|p.T137I|1|0.39|ENSG00000100997|chr20:25323337-25323337|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	423.9398498535156	3	423.539688	1267.59723	-0.01845	-7.8142E-06	-0.25672	-0.00010873	-0.27517	-0.00011654	423.5397501270348	55.661	1.0669	55.661	55.431	56.498	0					42	20	4	0	0	0	0.69834	1	19899	19899		23.801	0	1	18107000	+		23388	15291	17008	17126	22927	22927					-0.025860500044473156
IVDEEPQLYY	10	Unmodified	_IVDEEPQLYY_					0	0	0			REV__ABHD12|p.T137I|1|0.39|ENSG00000100997|chr20:25323337-25323337|G/A|missense_variant	REV__ABHD12|p.T137I|1|0.39|ENSG00000100997|chr20:25323337-25323337|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	423.93963623046875	3	423.539688	1267.59723	-0.29616	-0.00012543	-0.062714	-2.6562E-05	-0.35887	-0.000152	423.53982470150345	54.947	0.76477	55.697	55.422	56.187	0.75075					36	14	4	0	0	0	0.77998	1	20705	20705		23.801	0	1	17180000	+		23389	15291	17008	17126	22928	22928					-0.025860500044473156
IVDEEPQLYY	10	Unmodified	_IVDEEPQLYY_					0	0	0			REV__ABHD12|p.T137I|1|0.39|ENSG00000100997|chr20:25323337-25323337|G/A|missense_variant	REV__ABHD12|p.T137I|1|0.39|ENSG00000100997|chr20:25323337-25323337|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	634.805894	1267.59723	-0.61994	-0.00039354	-0.54108	-0.00034348	-1.161	-0.00073702	634.8060368123774	55.667	0.45896	55.667	55.482	55.941	0	0.0013248	-0.0011331	NaN	39.95	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7052100	+		23390	15291	17008	17126							-0.025860500044473156
IVDEGPPLPT	10	Unmodified	_IVDEGPPLPT_					0	0	0			REV__ENSG00000168538|ENST00000334690|TRAPPC11	REV__ENSG00000168538|ENST00000334690|TRAPPC11	MULTI-SECPEP	A375_MHC_IP_R2	2	1037.4842529296875	1	1037.55135	1036.54408	0.12868	0.00013351	-0.14935	-0.00015496	-0.020671	-2.1448E-05	1037.5511113316556	48.145	0.75412	48.906	48.582	49.336	0.76128					42	14	4	0	0	0	0.42954	1	18144	18144		49.933	9.9833	1	41810000	+		23391	20865	17009	17127	22929	22929					0.027266170035318282
IVDEGPPLPT	10	Unmodified	_IVDEGPPLPT_					0	0	0			REV__ENSG00000168538|ENST00000334690|TRAPPC11	REV__ENSG00000168538|ENST00000334690|TRAPPC11	MULTI-MATCH	A375_MHC_IP_R1	1		1	1037.55135	1036.54408	0.64474	0.00066895	-0.43012	-0.00044627	0.21463	0.00022269	1037.5508205740136	48.906	0.81012	48.906	48.577	49.387	0	0.00016396	-0.00018086	NaN	49.933	38	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43430000	+		23392	20865	17009	17127							0.027266170035318282
IVDHIHFQY	9	Unmodified	_IVDHIHFQY_					0	0	0		nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	MULTI-SECPEP	A375_MHC_IP_R1	1	391.60137939453125	3	391.201341	1170.58219	0.3175	0.00012421	-0.32	-0.00012519	-0.0025066	-9.8058E-07	391.2012484261859	54.267	0.60471	54.267	53.962	54.567	0					25	11	3	0	0	0	0.58271	1	19362	19362		19.362	16.29	1	3531600			23393	6345	17010	17128	22930	22930					0.0037254770886647748
IVDHIHFQY	9	Unmodified	_IVDHIHFQY_					0	0	0		nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	MULTI-MSMS	A375_MHC_IP_R2	2	391.6016845703125	3	391.201341	1170.58219	-0.73532	-0.00028766	0.67542	0.00026423	-0.059893	-2.343E-05	391.20161784798904	53.469	0.51073	54.22	53.944	54.454	0.75105					31	9	5	0	0	0	0.2002	1	20170	20170		28.495	15.622	1	5954500			23394	6345	17010	17128	22931	22931					0.0037254770886647748
IVDHNIADY	9	Unmodified	_IVDHNIADY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R1	1	530.658447265625	2	530.258914	1058.50327	-0.82836	-0.00043925	0.23561	0.00012493	-0.59276	-0.00031431	530.2590085871452	41.145	0.60774	41.145	40.913	41.521	0					30	11	3	0	0	0	0.012843	2	14171	14117;14171		92.653	54.502	1	16079000			23395	7864	17011	17129	22932;22933	22933					-0.023637243161147126
IVDHNIADY	9	Unmodified	_IVDHNIADY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R2	2	530.6585083007812	2	530.258914	1058.50327	-0.70194	-0.00037221	-0.037391	-1.9827E-05	-0.73933	-0.00039204	530.2588594827544	40.481	0.66068	41.255	40.98	41.641	0.77451					31	12	3	0	0	0	0.0096397	1	14957	14957		126.57	82.708	1	18661000			23396	7864	17011	17129	22934	22934					-0.023637243161147126
IVDKTASFV	9	Unmodified	_IVDKTASFV_					0	0	0		nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1;ENST00000496189.1_1_22:30748938-30752805:-|nuORF;SF3A1|p.D88Afs*49|1|0.21|ENSG00000099995|chr22:30346442-30346442|T/-|frameshift_variant;ENST00000463818.1_1_22:30742246-30752805:-|nuORF	nc|ENSG00000099995|Q15459-2|SF3A1	nc|ENSG00000099995|Q15459-2|SF3A1	MULTI-MSMS	A375_MHC_IP_R1	1	490.6766357421875	2	490.276575	978.538597	-0.037775	-1.852E-05	0.31892	0.00015636	0.28114	0.00013784	490.27679649487357	45.509	0.50443	45.509	45.284	45.789	0					15	9	2	0	0	0	0.13797	1	15965	15965		43.858	1.7637	1	1846000			23397	2099	17012	17130	22935	22935					0.04846938211721863
IVDKVPSV	8	Unmodified	_IVDKVPSV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	A375_MHC_IP_R1	1	429.2911071777344	2	428.760561	855.506569	0.06061	2.5987E-05	-0.12554	-5.3825E-05	-0.064925	-2.7837E-05	428.76043451082296	42.764	0.86261	42.764	42.386	43.249	0					38	16	3	0	0	0	0.073566	1	14839	14839		99.755	27.833	1	7443300			23398	8361	17013	17131	22936	22936					0.0730357052857471
IVDKVPSV	8	Unmodified	_IVDKVPSV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-SECPEP	A375_MHC_IP_R2	2	429.160400390625	2	428.760561	855.506569	-0.16424	-7.0422E-05	-0.04032	-1.7288E-05	-0.20456	-8.7709E-05	428.76050600617583	41.959	0.71654	42.734	42.401	43.118	0.77451					31	13	3	0	0	0	0.29596	1	15556	15556		79.596	31.25	1	8772800			23399	8361	17013	17131	22937	22937					0.0730357052857471
IVDPGYLGY	9	Unmodified	_IVDPGYLGY_					0	0	0		ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	MULTI-MSMS	A375_MHC_IP_R1	1	498.6543273925781	2	498.755475	995.496398	-0.52436	-0.00026153	0.070262	3.5043E-05	-0.4541	-0.00022648	498.75546283635333	91.073	1.7213	91.073	90.742	92.463	0					82	33	4	0	0	0	0.25276	1	33822	33822		34.102	17.16	1	58467000			23400	3851	17014	17132	22938	22938					-0.001530371966509847
IVDPGYLGY	9	Unmodified	_IVDPGYLGY_					0	0	0		ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	MULTI-MSMS	A375_MHC_IP_R1	1	996.9044189453125	1	996.503674	995.496398	0.070418	7.0172E-05	-0.19593	-0.00019525	-0.12551	-0.00012508	996.5034464785055	91.218	4.4684	91.218	90.742	95.211	0					215	87	5	0	0	0	0.27715	1	34617	34617		32.305	21.482	1	416520000			23401	3851	17014	17132	22939	22939					-0.001530371966509847
IVDPGYLGY	9	Unmodified	_IVDPGYLGY_					0	0	0		ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	MULTI-MSMS	A375_MHC_IP_R2	2	996.9029541015625	1	996.503674	995.496398	0.11257	0.00011217	-0.32401	-0.00032288	-0.21145	-0.00021071	996.5033089211375	90.552	4.4605	91.286	90.854	95.314	0.73451					191	87	5	0	0	0	0.38603	1	35846	35846		25.399	16.052	1	430680000			23402	3851	17014	17132	22940	22940					-0.001530371966509847
IVDPGYLGY	9	Unmodified	_IVDPGYLGY_					0	0	0		ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	MULTI-SECPEP	A375_MHC_IP_R2	2	499.1551513671875	2	498.755475	995.496398	-0.42969	-0.00021431	0.0091436	4.5604E-06	-0.42055	-0.00020975	498.75542247694636	90.551	1.6245	91.285	90.854	92.478	0.7345					95	31	4	0	0	0	0.025883	1	34569	34569		101.72	59.627	1	134420000			23403	3851	17014	17132	22941	22941					-0.001530371966509847
IVDPGYLGYLY	11	Unmodified	_IVDPGYLGYLY_					0	0	0		ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	MULTI-MSMS	A375_MHC_IP_R2	2	637.2308349609375	2	636.829172	1271.64379	-0.81274	-0.00051758	0.78265	0.00049841	-0.030093	-1.9164E-05	636.8295512071326	127.58	0.25436	127.84	127.66	127.92	0.26593					8	4	2	0	0	0	0.38771	1	50066	50066		39.95	12.321	1	8980700			23404	3851	17015	17133	22942	22942					0.01883434617502644
IVDPGYLGYLY	11	Unmodified	_IVDPGYLGYLY_					0	0	0		ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	MULTI-MATCH	A375_MHC_IP_R1	1		2	636.829172	1271.64379	-0.42672	-0.00027175	-0.37556	-0.00023917	-0.80228	-0.00051092	636.8287385848305	127.84	0.15388	127.84	127.72	127.87	0	-0.00075926	-0.00045536	NaN	39.95	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6926300			23405	3851	17015	17133							0.01883434617502644
IVDPSLIHV	9	Unmodified	_IVDPSLIHV_					0	0	0		ENSG00000115548|ENST00000312912|KDM3A;ENST00000488971.1_1_2:86683605-86693535:+|nuORF	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	MULTI-SECPEP	A375_MHC_IP_R1	1	497.192138671875	2	496.792392	991.570232	-0.52845	-0.00026253	0.030915	1.5359E-05	-0.49753	-0.00024717	496.7924205251503	80.415	0.45509	80.415	80.187	80.642	0					14	8	2	0	0	0	0.043556	1	29377	29377		77.984	27.129	1	3163700			23406	3321	17016	17134	22943	22943					0.07410930965681928
IVDPSLIHV	9	Unmodified	_IVDPSLIHV_					0	0	0		ENSG00000115548|ENST00000312912|KDM3A;ENST00000488971.1_1_2:86683605-86693535:+|nuORF	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	MULTI-SECPEP	A375_MHC_IP_R2	2	497.19232177734375	2	496.792392	991.570232	-0.39645	-0.00019695	0.3759	0.00018674	-0.020549	-1.0208E-05	496.79266910984205	79.597	0.55964	80.342	80.047	80.607	0.74474					18	10	2	0	0	0	0.089948	1	30230	30230		70.716	26.309	1	2449100			23407	3321	17016	17134	22944	22944					0.07410930965681928
IVDRFTSKY	9	Unmodified	_IVDRFTSKY_					0	0	0		nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1	nc|ENSG00000198862|O94822-3|LTN1	nc|ENSG00000198862|O94822-3|LTN1	MULTI-SECPEP	A375_MHC_IP_R1	1	377.2732238769531	3	376.873113	1127.59751	0.12784	4.8178E-05	-0.19763	-7.448E-05	-0.069789	-2.6302E-05	376.87312163620385	32.466	0.40261	32.466	32.282	32.684	0					18	7	3	0	0	0	0.35487	1	10495	10495		27.223	7.9662	1	15674000			23408	9354	17017	17135	22945	22945					0.038814145060541705
IVDRFTSKY	9	Unmodified	_IVDRFTSKY_					0	0	0		nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1	nc|ENSG00000198862|O94822-3|LTN1	nc|ENSG00000198862|O94822-3|LTN1	MULTI-SECPEP	A375_MHC_IP_R2	2	377.2733154296875	3	376.873113	1127.59751	0.19156	7.2193E-05	0.89707	0.00033808	1.0886	0.00041028	376.8737328227749	31.709	0.76452	32.446	31.89	32.654	0.73691					20	14	2	0	0	0	0.31606	1	11224	11224		43.982	5.8063	1	9027400			23409	9354	17017	17135	22946	22946					0.038814145060541705
IVDRTTTVV	9	Unmodified	_IVDRTTTVV_					0	0	0		ENSG00000115902|ENST00000234256|SLC1A4;nc|ENSG00000115902|P43007-2|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	MULTI-MSMS	A375_MHC_IP_R1	1	502.69189453125	2	502.292756	1002.57096	-0.4791	-0.00024065	-0.32223	-0.00016185	-0.80132	-0.0004025	502.2925663525873	33.099	1.0118	33.099	32.887	33.898	0					45	19	4	0	0	0	0.027818	1	10740	10740		76.825	76.825	1	48392000			23410	3348	17018	17136	22947	22947					0.06977725614717656
IVDRTTTVV	9	Unmodified	_IVDRTTTVV_					0	0	0		ENSG00000115902|ENST00000234256|SLC1A4;nc|ENSG00000115902|P43007-2|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	MULTI-SECPEP	A375_MHC_IP_R2	2	502.4537658691406	2	502.292756	1002.57096	-0.66005	-0.00033154	-0.52202	-0.00026221	-1.1821	-0.00059375	502.2924703553782	32.35	0.81378	33.087	32.806	33.62	0.73692					42	15	4	0	0	0	0.10362	1	11538	11538		72.968	51.431	1	67706000			23411	3348	17018	17136	22948	22948					0.06977725614717656
IVDSLTEMY	9	Oxidation (M)	_IVDSLTEM(Oxidation (M))Y_		IVDSLTEM(1)Y		IVDSLTEM(78)Y	0	0	1		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	A375_MHC_IP_R1	1	544.1546630859375	2	543.754815	1085.49508	-0.38323	-0.00020838	2.3757	0.0012918	1.9925	0.0010834	543.7561541602078	70.367	1.3766	70.367	69.782	71.159	0					59	26	4	0	0	0	0.061132	1	25438	25438		77.984	62.137	1	5531300			23412	3905	17019	17137	22949	22949		200			-0.04425039347734128
IVDSLTEMY	9	Oxidation (M)	_IVDSLTEM(Oxidation (M))Y_					0	0	1		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	543.754815	1085.49508	-0.73685	-0.00040067	1.6486	0.00089642	0.91173	0.00049576	543.7558607757634	69.542	1.5233	70.276	69.829	71.352	0.73421	-0.04506	-0.00034914	NaN	77.984	70	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4132600			23413	3905	17019	17137				200			-0.04425039347734128
IVDSRELGY	9	Unmodified	_IVDSRELGY_					0	0	0		ENSG00000145365|ENST00000361717|TIFA	ENSG00000145365|ENST00000361717|TIFA	ENSG00000145365|ENST00000361717|TIFA	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1768798828125	2	526.274564	1050.53457	-0.58874	-0.00030984	-0.070853	-3.7288E-05	-0.6596	-0.00034713	526.2743988797548	55.835	0.51054	56.585	56.337	56.847	0.75014					15	9	2	0	0	0	0.69504	1	21014	21014		7.9102	0	1	2574700			23414	5554	17020	17138	22950	22950					0.011328487180207958
IVDTIIKLD	9	Unmodified	_IVDTIIKLD_					0	0	0			REV__nc|ENSG00000108604|Q92925-3|SMARCD2	REV__nc|ENSG00000108604|Q92925-3|SMARCD2	MULTI-MSMS	A375_MHC_IP_R2	2	1030.906982421875	1	1029.61904	1028.61176	-0.0085393	-8.7922E-06	1.4035	0.0014451	1.395	0.0014363	1029.6200409332666	127.78	0.2527	128.04	127.97	128.22	0.26592					9	4	3	0	0	0	0.44024	1	50200	50200		22.736	1.1993	1	73641000	+		23415	17546	17021	17139	22951	22951					0.098600669343341
IVDTKWLSY	9	Unmodified	_IVDTKWLSY_					0	0	0			REV__ENSG00000166920|ENST00000396650|C15orf48	REV__ENSG00000166920|ENST00000396650|C15orf48	MULTI-SECPEP	A375_MHC_IP_R1	1	562.1389770507812	2	562.802957	1123.59136	-0.48195	-0.00027124	0.088385	4.9743E-05	-0.39356	-0.0002215	562.8029588190057	64.368	0.55899	64.368	64.191	64.75	0					16	10	2	0	0	0	0.53748	1	23348	23348		30.637	6.616	1	1441100	+		23416	20717	17022	17140	22952	22952					0.03450896274512161
IVDTRDPY	8	Unmodified	_IVDTRDPY_					0	0	0			REV__ENSG00000116786|ENST00000375799|PLEKHM2	REV__ENSG00000116786|ENST00000375799|PLEKHM2	MULTI-MSMS	A375_MHC_IP_R1	1	490.1480407714844	2	489.748182	977.481811	-0.27602	-0.00013518	0.72984	0.00035744	0.45382	0.00022226	489.74831580145843	52.198	0.91651	52.198	51.879	52.796	0					30	17	4	0	0	0	0.77123	1	18585	18585		14.582	3.4672	1	3116500	+		23417	17972	17023	17141	22953	22953					-0.007831093448203319
IVDYRTRW	8	Unmodified	_IVDYRTRW_					0	0	0		ENST00000496538.1_1_1:156693891-156697171:-|nuORF;ENSG00000143319|ENST00000368219|ISG20L2	ENST00000496538.1_1_1:156693891-156697171:-|nuORF	ENST00000496538.1_1_1:156693891-156697171:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	370.9369812011719	3	370.201452	1107.58253	0.043445	1.6083E-05	1.0165	0.00037629	1.0599	0.00039238	370.20140462807296	19.494	0.75872	20.102	19.638	20.396	0.60801					36	14	3	0	0	0	0.77562	1	5923	5923		8.1555	3.6267	1	5364000			23418	5368	17024	17142	22954	22954					0.03303967428701071
IVEAVNHLTL	10	Unmodified	_IVEAVNHLTL_					0	0	0			REV__ENSG00000134490|ENST00000383233|TMEM241	REV__ENSG00000134490|ENST00000383233|TMEM241	MULTI-SECPEP	A375_MHC_IP_R1	1	554.6871948242188	2	554.821681	1107.62881	-0.59244	-0.0003287	0.19607	0.00010879	-0.39636	-0.00021991	554.8219122344116	61.074	0.61137	61.074	60.719	61.331	0					28	11	4	0	0	0	0.19943	1	21969	21969		69.105	0	1	8385200	+		23419	18783	17025	17143	22955	22955					0.07929987540137517
IVEGNIPEV	9	Unmodified	_IVEGNIPEV_					0	0	0		ENSG00000143126|ENST00000271332|CELSR2	ENSG00000143126|ENST00000271332|CELSR2	ENSG00000143126|ENST00000271332|CELSR2	MULTI-MSMS	A375_MHC_IP_R1	1	485.7078857421875	2	485.266207	968.517862	-0.44374	-0.00021533	-0.090536	-4.3934E-05	-0.53427	-0.00025927	485.26612726204894	86.552	1.98	86.552	86.072	88.052	0					120	38	5	0	0	0	0.32092	1	31604	31604		29.082	4.0906	1	229260000			23420	5346	17026	17144	22956	22956					0.032343478320512986
IVENTGFEI	9	Unmodified	_IVENTGFEI_					0	0	0		tr|U7T4B0|U7T4B0_FUSNUGlutaconateCoA-transferasesubunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00405PE=3SV=1	tr|U7T4B0|U7T4B0_FUSNUGlutaconateCoA-transferasesubunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00405PE=3SV=1	tr|U7T4B0|U7T4B0_FUSNUGlutaconateCoA-transferasesubunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00405PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	1022.6533813476562	1	1021.52005	1020.51278	-0.39547	-0.00040398	-0.13229	-0.00013514	-0.52776	-0.00053912	1021.5198584118048	56.98	0.76458	57.73	57.356	58.121	0.75014					40	14	4	0	0	0	0.72985	1	21404	21404		4.3292	0.38484	1	24028000			23421	29998	17027	17145	22957	22957					0.003340439694284214
IVENTGFEI	9	Unmodified	_IVENTGFEI_					0	0	0		tr|U7T4B0|U7T4B0_FUSNUGlutaconateCoA-transferasesubunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00405PE=3SV=1	tr|U7T4B0|U7T4B0_FUSNUGlutaconateCoA-transferasesubunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00405PE=3SV=1	tr|U7T4B0|U7T4B0_FUSNUGlutaconateCoA-transferasesubunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00405PE=3SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		1	1021.52005	1020.51278	0.1796	0.00018347	0.00014005	1.4306E-07	0.17974	0.00018361	1021.5199830833069	57.699	0.65965	57.699	57.364	58.024	0	-0.015761	6.1332E-05	NaN	4.3292	37	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23931000			23422	29998	17027	17145							0.003340439694284214
IVEQTEFIY	9	Unmodified	_IVEQTEFIY_					0	0	0		ARHGAP35|p.D101Y|1|0.46|ENSG00000160007|chr19:46918976-46918976|G/T|missense_variant	ARHGAP35|p.D101Y|1|0.46|ENSG00000160007|chr19:46918976-46918976|G/T|missense_variant	ARHGAP35|p.D101Y|1|0.46|ENSG00000160007|chr19:46918976-46918976|G/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	571.5046997070312	2	571.292422	1140.57029	-0.27269	-0.00015579	-0.51333	-0.00029326	-0.78602	-0.00044905	571.7927547617626	98.315	0.35698	99.075	98.895	99.251	0.75977					8	6	2	0	0	0	0.65246	1	37297	37297		10.824	6.4947	1	700530			23423	175	17028	17146	22958	22958					0.005628861749983116
IVEVEGLPV	9	Unmodified	_IVEVEGLPV_					0	0	0		nc|ENSG00000155657|Q8WZ42-6|TTN	nc|ENSG00000155657|Q8WZ42-6|TTN	nc|ENSG00000155657|Q8WZ42-6|TTN	MULTI-SECPEP	A375_MHC_IP_R1	1	478.1783447265625	2	477.778951	953.543348	-0.74985	-0.00035826	-0.109	-5.208E-05	-0.85885	-0.00041034	477.778775010547	134.09	0.45575	134.09	133.97	134.42	0					15	8	3	0	0	0	0.14105	1	51738	51738		50.855	2.5092	1	6607300			23424	14693	17029	17147	22959	22959					0.06471822354467349
IVEWTGKTIF	10	Unmodified	_IVEWTGKTIF_					0	0	0			REV__ENSG00000197635|ENST00000360534|DPP4	REV__ENSG00000197635|ENST00000360534|DPP4	MULTI-SECPEP	A375_MHC_IP_R1	1	597.2086181640625	2	597.331882	1192.64921	-0.55987	-0.00033443	2.4523	0.0014648	1.8924	0.0011304	597.8359688461755	90.296	0.25327	90.296	90.083	90.336	0					5	4	2	0	0	0	0.87163	1	33155	33155		13.906	0.86358	1	618800	+		23425	22305	17030	17148	22960	22960					0.06059158199923331
IVFGSFHLS	9	Unmodified	_IVFGSFHLS_					0	0	0			REV__ENST00000330198.8_2_3:197765919-197766228:+|nuORF	REV__ENST00000330198.8_2_3:197765919-197766228:+|nuORF	MSMS	A375_MHC_IP_R1	1	503.69049072265625	2	503.77146	1005.52837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.808	1	66.808	66.308	67.308	0								0	0	0	0.15283	1	24204	24204		16.942	0.79319	1		+		23426	23617	17031	17149	22961	22961					0.025823752771316322
IVFKEKPKY	9	Unmodified	_IVFKEKPKY_					0	0	0		ENST00000556241.5_1_14:76088442-76101338:+|nuORF;nc|ENSG00000119686|Q9UPI3-2|FLVCR2;ENSG00000119686|ENST00000238667|FLVCR2	ENST00000556241.5_1_14:76088442-76101338:+|nuORF	ENST00000556241.5_1_14:76088442-76101338:+|nuORF	MSMS	A375_MHC_IP_R1	1	384.59405517578125	3	384.56562	1150.67503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.278	1	24.278	23.778	24.778	0								0	0	0	0.15486	1	6856	6856		2.7352	0.23671	1				23427	3612	17032	17150	22962	22962					0.1057205244223951
IVFLAFKKI	9	Unmodified	_IVFLAFKKI_					0	0	0		ENST00000465541.1_1_13:51524391-51530607:+|nuORF	ENST00000465541.1_1_13:51524391-51530607:+|nuORF	ENST00000465541.1_1_13:51524391-51530607:+|nuORF	MSMS	A375_MHC_IP_R1	1	360.2744140625	3	360.238956	1077.69504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.688	1	68.688	68.188	69.188	0								0	0	0	0.15486	1	24913	24913		2.9952	0.90923	1				23428	12243	17033	17151	22963	22963					0.15929848172845595
IVFLAFKKI	9	Unmodified	_IVFLAFKKI_					0	0	0		ENST00000465541.1_1_13:51524391-51530607:+|nuORF	ENST00000465541.1_1_13:51524391-51530607:+|nuORF	ENST00000465541.1_1_13:51524391-51530607:+|nuORF	MSMS	A375_MHC_IP_R1	1	360.2236633300781	3	360.238956	1077.69504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.742	1	72.742	72.242	73.242	0								0	0	0	0.15486	1	26469	26469		4.1895	0	1				23429	12243	17033	17151	22964	22964					0.15929848172845595
IVFRKKVFR	9	Unmodified	_IVFRKKVFR_					0	0	0		ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3	ENSG00000165323|ENST00000525166|FAT3	ENSG00000165323|ENST00000525166|FAT3	MULTI-SECPEP	A375_MHC_IP_R1	1	596.425537109375	2	596.887493	1191.76043	-0.35644	-0.00021275	2.5292	0.0015097	2.1728	0.0012969	597.3896266315218	102.56	0.30301	102.56	102.4	102.71	0					7	5	2	0	0	0	0.8028	1	37637	37637		4.3292	4.0222	1	1819400			23430	6942	17034	17152	22965	22965					0.17222262418522405
IVFRTQFPKC	10	Unmodified	_IVFRTQFPKC_					0	0	0		ENSG00000091138|ENST00000340010|SLC26A3	ENSG00000091138|ENST00000340010|SLC26A3	ENSG00000091138|ENST00000340010|SLC26A3	MSMS	A375_MHC_IP_R1	1	619.779052734375	2	619.839351	1237.66415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.374	1	84.374	83.874	84.874	0								0	0	0	0.15417	1	30901	30901		7.2892	0	1				23431	1972	17035	17153	22966	22966					0.054823267963001854
IVFVHNKIYL	10	Unmodified	_IVFVHNKIYL_					0	0	0		nc|ENSG00000064933|P54277-3|PMS1;nc|ENSG00000064933|P54277-4|PMS1;ENST00000421722.5_1_2:190656520-190720594:+|nuORF	nc|ENSG00000064933|P54277-3|PMS1	nc|ENSG00000064933|P54277-3|PMS1	MULTI-MSMS	A375_MHC_IP_R2	2	416.3164978027344	3	415.916653	1244.72813	-0.22756	-9.4646E-05	-0.48606	-0.00020216	-0.71362	-0.00029681	415.9165017598033	41.289	0.55651	42.063	41.845	42.401	0.77451					19	10	3	0	0	0	0.60556	1	15358	15358		12.873	1.3547	1	2116000			23432	14471	17036	17154	22967	22967					0.11555430224893826
IVFWKYRRFQR	11	Unmodified	_IVFWKYRRFQR_					0	0	0		ENSG00000204019|ENST00000371894|CT83	ENSG00000204019|ENST00000371894|CT83	ENSG00000204019|ENST00000371894|CT83	MSMS	A375_MHC_IP_R2	2	533.7020263671875	3	533.640405	1597.89939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.57	1	133.74	133.24	134.24	0.16487								0	0	0	0.16332	1	52545	52545		1.4551	0.44154	1				23433	9405	17037	17155	22968	22968					0.12435180316037986
IVFYFYMY	8	Unmodified	_IVFYFYMY_					0	0	0			REV__SCN2A|p.L1451F|1|0.39|ENSG00000136531|chr2:165380634-165380634|C/T|missense_variant	REV__SCN2A|p.L1451F|1|0.39|ENSG00000136531|chr2:165380634-165380634|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	572.6796264648438	2	573.272447	1144.53034	-0.13165	-7.5472E-05	2.072	0.0011878	1.9404	0.0011124	573.7750150647618	79.349	0.30312	80.094	79.896	80.199	0.74474					8	5	2	0	0	0	0.95327	1	30045	30045		11.114	0.29054	1	1023900	+		23434	27919	17038	17156	22969	22969					-0.036143320292694625
IVGGAPLV	8	Unmodified	_IVGGAPLV_					0	0	0			REV__ARSD|p.R406G|1|0.35|ENSG00000006756|chrX:2909899-2909899|G/C|missense_variant	REV__ARSD|p.R406G|1|0.35|ENSG00000006756|chrX:2909899-2909899|G/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	724.84814453125	1	725.455602	724.448326	-0.91744	-0.00066556	2.1427	0.0015544	1.2252	0.00088884	725.4527650808102	147.02	0.32942	147.02	146.93	147.26	0					52	38	2	0	0	0	0.972	1	56286	56286		0.79363	0	1	83693	+		23435	15453	17039	17157	22970	22970					0.07507933673957723
IVGGQCKQF	9	Unmodified	_IVGGQCKQF_					0	0	0			REV__ENST00000361464.7_1_10:103545710-103545821:-|nuORF	REV__ENST00000361464.7_1_10:103545710-103545821:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	489.50128173828125	2	490.25512	978.495686	-0.87747	-0.00043019	0.12469	6.1129E-05	-0.75279	-0.00036906	490.25522301380664	52.09	0.40844	52.843	52.524	52.932	0.75225					13	7	2	0	0	0	0.69504	1	19538	19538		18.135	8.7875	1	1331500	+		23436	23913	17040	17158	22971	22971					0.005578448826327076
IVGTPGRKV	9	Unmodified	_IVGTPGRKV_					0	0	0			REV__ENST00000579482.5_1_17:72858941-72860228:-|nuORF	REV__ENST00000579482.5_1_17:72858941-72860228:-|nuORF	MSMS	A375_MHC_IP_R1	1	463.6892395019531	2	463.792727	925.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.428	1	55.428	54.928	55.928	0								0	0	0	0.15131	1	19823	19823		19.439	5.9311	1		+		23437	20209	17041	17159	22972	22972					0.1051377040537318
IVGVVKPV	8	Unmodified	_IVGVVKPV_					0	0	0		ACE2|p.E489K|1|0.44|ENSG00000130234|chrX:15573443-15573443|C/T|missense_variant	ACE2|p.E489K|1|0.44|ENSG00000130234|chrX:15573443-15573443|C/T|missense_variant	ACE2|p.E489K|1|0.44|ENSG00000130234|chrX:15573443-15573443|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	405.6120300292969	2	405.776014	809.537475	-0.13296	-5.3954E-05	0.34098	0.00013836	0.20802	8.4409E-05	405.7760129878532	45.627	0.20298	45.627	45.484	45.687	0					5	3	2	0	0	0	0.90224	1	15962	15962		26.341	0	1	898840			23438	31	17042	17160	22973	22973					0.125087686334723
IVGYVVGVLV	10	Unmodified	_IVGYVVGVLV_					0	0	0			REV__nc|ENSG00000090020|P19634-2|SLC9A1	REV__nc|ENSG00000090020|P19634-2|SLC9A1	MULTI-SECPEP	A375_MHC_IP_R2	2	509.701904296875	2	509.320786	1016.62702	-0.87923	-0.00044781	-0.029971	-1.5265E-05	-0.90921	-0.00046308	509.32061565492586	96.803	0.40178	97.558	97.318	97.72	0.75586					10	7	2	0	0	0	0.67143	1	36766	36766		24.674	6.5389	1	993220	+		23439	16921	17043	17161	22974	22974					0.11936978522180652
IVGYYTVW	8	Unmodified	_IVGYYTVW_					0	0	0		NNT|p.H514Y|1|0.24|ENSG00000112992|chr5:43649242-43649242|C/T|missense_variant	NNT|p.H514Y|1|0.24|ENSG00000112992|chr5:43649242-43649242|C/T|missense_variant	NNT|p.H514Y|1|0.24|ENSG00000112992|chr5:43649242-43649242|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	500.4745788574219	2	500.760561	999.506569	-0.48081	-0.00024077	-3.3113	-0.0016582	-3.7921	-0.0018989	500.7590944568886	90.298	0.76081	91.03	90.751	91.511	0.7318					19	14	2	0	0	0	0.93416	1	34377	34377		14.582	3.7822	1	1206400			23440	15011	17044	17162	22975	22975					0.00679570528552631
IVHITLHSL	9	Unmodified	_IVHITLHSL_					0	0	0		ALDH3A1|p.D390N|1|0.58|ENSG00000108602|chr17:19739044-19739044|C/T|missense_variant;ENSG00000108602|ENST00000225740|ALDH3A1;ENST00000479677.6_1_17:19641536-19646703:-|nuORF	ALDH3A1|p.D390N|1|0.58|ENSG00000108602|chr17:19739044-19739044|C/T|missense_variant	ALDH3A1|p.D390N|1|0.58|ENSG00000108602|chr17:19739044-19739044|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	516.1450805664062	2	516.813659	1031.61277	-0.69572	-0.00035956	-0.1497	-7.7368E-05	-0.84542	-0.00043693	516.8135635283621	42.445	0.35581	43.217	43.014	43.369	0.7724					10	6	2	0	0	0	0.71541	1	15755	15755		11.64	6.4096	1	2007700			23441	102	17045	17163	22976	22976					0.09822326093922129
IVIFLIPILY	10	Unmodified	_IVIFLIPILY_					0	0	0			REV__tr|U7SKI2|U7SKI2_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02039PE=4SV=1	REV__tr|U7SKI2|U7SKI2_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02039PE=4SV=1	MSMS	A375_MHC_IP_R2	2	602.4617309570312	2	602.391211	1202.76787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.508	1	92.242	91.742	92.742	0.7345								0	0	0	0.15585	1	34807	34807		1.8442	0	1		+		23442	28252	17046	17164	22977	22977					0.17459557175629925
IVIFLLLLVMF	11	Unmodified	_IVIFLLLLVMF_					0	0	0			REV__ENST00000491089.1_1_7:135330799-135333301:+|nuORF	REV__ENST00000491089.1_1_7:135330799-135333301:+|nuORF	MSMS	A375_MHC_IP_R2	2	661.2206420898438	2	660.921821	1319.82909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133	1	133.17	132.67	133.67	0.16487								0	0	0	0.1623	1	52324	52324		6.7232	0	1		+		23443	25397	17047	17165	22978	22978					0.18196745883369658
IVIGVLHQL	9	Unmodified	_IVIGVLHQL_					0	0	0		nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX;ENST00000585403.5_1_17:40721871-40723618:+|nuORF	nc|ENSG00000108788|Q9UH92-2|MLX	nc|ENSG00000108788|Q9UH92-2|MLX	MULTI-MSMS	A375_MHC_IP_R1	1	496.7184143066406	2	496.318577	990.622602	-0.58858	-0.00029212	0.0075358	3.7402E-06	-0.58104	-0.00028838	496.3184603817444	91.073	0.70962	91.073	90.692	91.401	0					19	13	2	0	0	0	0.077132	1	33458	33458		54.774	10.367	1	3156800			23444	2836	17048	17166	22979	22979					0.12691514099276446
IVIGVLHQL	9	Unmodified	_IVIGVLHQL_					0	0	0		nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX;ENST00000585403.5_1_17:40721871-40723618:+|nuORF	nc|ENSG00000108788|Q9UH92-2|MLX	nc|ENSG00000108788|Q9UH92-2|MLX	MULTI-MSMS	A375_MHC_IP_R2	2	496.71856689453125	2	496.318577	990.622602	-0.37002	-0.00018365	-0.071689	-3.5581E-05	-0.44171	-0.00021923	496.31848669303133	90.044	0.45885	90.776	90.597	91.056	0.7318					14	8	2	0	0	0	0.050162	1	34284	34284		64.236	13.381	1	2676500			23445	2836	17048	17166	22980	22980					0.12691514099276446
IVIKKDEVM	9	Unmodified	_IVIKKDEVM_					0	0	0			REV__nc|ENSG00000009413|O60673-2|REV3L	REV__nc|ENSG00000009413|O60673-2|REV3L	MULTI-SECPEP	A375_MHC_IP_R1	1	1073.8983154296875	1	1074.62274	1073.61547	0.0046063	4.95E-06	0.83901	0.00090162	0.84362	0.00090657	1075.6253968305969	120.46	2.7355	120.46	118.42	121.16	0					73	53	2	0	0	0	0.77834	1	44415	44415		0.52476	0.52476	1	228060000	+		23446	16184	17049	17167	22981	22981					0.08160413436553426
IVIRIPLRY	9	Unmodified	_IVIRIPLRY_					0	0	0		ADORA2A|p.A105V|1|0.26|ENSG00000128271|chr22:24433718-24433718|C/T|missense_variant	ADORA2A|p.A105V|1|0.26|ENSG00000128271|chr22:24433718-24433718|C/T|missense_variant	ADORA2A|p.A105V|1|0.26|ENSG00000128271|chr22:24433718-24433718|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	571.8780517578125	2	571.874051	1141.73355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.368	1	87.101	86.601	87.601	0.733								0	0	0	0.15486	1	32845	32845		5.2307	0.90143	1				23447	77	17050	17168	22982	22982					0.16835153807369352
IVKEIRIAKG	10	Unmodified	_IVKEIRIAKG_					0	0	0			REV__ENSG00000187605|ENST00000409262|TET3	REV__ENSG00000187605|ENST00000409262|TET3	MULTI-MSMS	A375_MHC_IP_R1	1	377.30780029296875	3	376.248403	1125.72338	-0.0086889	-3.2692E-06	0.16597	6.2446E-05	0.15728	5.9177E-05	376.24840531237174	29.939	1.554	29.939	29.657	31.211	0					84	30	4	0	0	0	0.41205	1	9655	9655		33.445	1.4074	1	97095000	+		23448	22032	17051	17169	22983	22983					0.16554546082102206
IVKELIVTF	9	Unmodified	_IVKELIVTF_					0	0	0		ENST00000375206.6_1_9:100008408-100053768:+|nuORF;ENST00000375204.2_1_9:100008408-100054866:+|nuORF;ENST00000527128.5_1_9:100008408-100053855:+|nuORF	ENST00000375206.6_1_9:100008408-100053768:+|nuORF	ENST00000375206.6_1_9:100008408-100053768:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	531.5313720703125	2	531.333893	1060.65323	-0.52706	-0.00028005	0.52032	0.00027647	-0.0067356	-3.5788E-06	531.3341827551626	97.592	0.45819	97.592	97.49	97.948	0					10	8	2	0	0	0	0.32889	1	35859	35859		28.495	0.86571	1	1160800			23449	11266	17052	17170	22984	22984					0.12533247693659177
IVKFHKYW	8	Unmodified	_IVKFHKYW_					0	0	0		ENSG00000115216|ENST00000379852|NRBP1;NRBP1|p.S428Lfs*8|1|0.29|ENSG00000115216|chr2:27440886-27440887|-/C|frameshift_variant	ENSG00000115216|ENST00000379852|NRBP1	ENSG00000115216|ENST00000379852|NRBP1	MSMS	A375_MHC_IP_R2	2	560.84423828125	2	560.818744	1119.62294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.307	1	82.052	81.552	82.552	0.74474								0	0	0	0.16876	1	30875	30875		6.3541	0.59368	1				23450	3282	17053	17171	22985	22985					0.06790933819115708
IVKHALIPG	9	Unmodified	_IVKHALIPG_					0	0	0		ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	MULTI-SECPEP	A375_MHC_IP_R1	1	473.68402099609375	2	474.30547	946.596387	-0.66963	-0.00031761	0.65188	0.00030919	-0.017752	-8.4197E-06	474.3057100805737	52.85	0.60735	52.85	52.592	53.199	0					22	11	3	0	0	0	0.77834	1	18951	18951		4.756	0	1	2647200			23451	9907	17054	17172	22986	22986					0.12095244927786553
IVKIQPAL	8	Unmodified	_IVKIQPAL_					0	0	0			REV__ENST00000439895.1_1_2:39038138-39038510:-|nuORF	REV__ENST00000439895.1_1_2:39038138-39038510:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	441.69439697265625	2	441.294571	880.574589	-0.41073	-0.00018125	0.018582	8.2E-06	-0.39215	-0.00017305	441.29463018890175	44.592	0.40538	45.361	45.138	45.543	0.76909					18	7	3	0	0	0	0.77651	1	16637	16637		34.102	7.2188	1	4826100	+		23452	18557	17055	17173	22987	22987					0.12952440179219593
IVKIVRPD	8	Unmodified	_IVKIVRPD_					0	0	0			REV__nc|ENSG00000149177|Q12913-2|PTPRJ	REV__nc|ENSG00000149177|Q12913-2|PTPRJ	MULTI-SECPEP	A375_MHC_IP_R1	1	940.3925170898438	1	939.598578	938.591301	0.038614	3.6282E-05	-3.3015	-0.0031021	-3.2629	-0.0030658	939.5961817474313	128.66	0.25323	128.66	128.48	128.73	0					5	4	2	0	0	0	0.972	1	49359	49359		10.183	0	1	3727000	+		23453	19665	17056	17174	22988	22988					0.11954941065164348
IVKKEEKGDYY	11	Unmodified	_IVKKEEKGDYY_					0	0	0		ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	MULTI-SECPEP	A375_MHC_IP_R1	1	686.7611083984375	2	686.361367	1370.70818	-0.38934	-0.00026723	0.059431	4.0791E-05	-0.32991	-0.00022643	686.3613354382729	70.178	0.7131	70.178	69.832	70.545	0					45	13	5	0	0	0	0.87263	1	25436	25436		43.772	19.983	1	29359000			23454	6155	17057	17175	22989	22989					0.037655897036529495
IVKKEEKGDYY	11	Unmodified	_IVKKEEKGDYY_					0	0	0		ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	MULTI-SECPEP	A375_MHC_IP_R2	2	686.7605590820312	2	686.361367	1370.70818	-0.57485	-0.00039456	-0.27528	-0.00018894	-0.85013	-0.0005835	686.3611171430678	69.526	0.76149	70.26	69.981	70.743	0.7342					45	14	5	0	0	0	0.87263	1	26328	26328		43.772	11.735	1	32339000			23455	6155	17057	17175	22990	22990					0.037655897036529495
IVKKELISSI	10	Unmodified	_IVKKELISSI_					0	0	0		tr|U7T447|U7T447_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00252PE=4SV=1	tr|U7T447|U7T447_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00252PE=4SV=1	tr|U7T447|U7T447_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00252PE=4SV=1	MSMS	A375_MHC_IP_R2	2	565.4463500976562	2	565.363182	1128.71181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.324	1	80.069	79.569	80.569	0.74474								0	0	0	0.15283	1	30102	30102		11.64	0	1				23456	29992	17058	17176	22991	22991					0.15260304268144864
IVKKILAKFKR	11	Unmodified	_IVKKILAKFKR_					0	0	0		ZNF770|p.L343F|1|0.36|ENSG00000198146|chr15:34982408-34982408|G/A|missense_variant	ZNF770|p.L343F|1|0.36|ENSG00000198146|chr15:34982408-34982408|G/A|missense_variant	ZNF770|p.L343F|1|0.36|ENSG00000198146|chr15:34982408-34982408|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	672.5062255859375	2	672.466107	1342.91766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.252	1	91.252	90.752	91.752	0								0	0	0	0.16353	1	33529	33529		0.35063	0.35063	1				23457	30242	17059	17177	22992	22992					0.2599192223804039
IVKKRYICWRR	11	Unmodified	_IVKKRYICWRR_					0	0	0		ENST00000531050.5_1_6:128321419-128718758:-|nuORF	ENST00000531050.5_1_6:128321419-128718758:-|nuORF	ENST00000531050.5_1_6:128321419-128718758:-|nuORF	MSMS	A375_MHC_IP_R1	1	760.890625	2	760.953372	1519.89219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.72	1	112.72	112.22	113.22	0								0	0	0	0.16331	1	41314	41314		1.4819	0.15237	1				23458	13164	17060	17178	22993	22993					0.1530412444394642
IVKKRYICWRR	11	Unmodified	_IVKKRYICWRR_					0	0	0		ENST00000531050.5_1_6:128321419-128718758:-|nuORF	ENST00000531050.5_1_6:128321419-128718758:-|nuORF	ENST00000531050.5_1_6:128321419-128718758:-|nuORF	MSMS	A375_MHC_IP_R1	1	760.477294921875	2	760.953372	1519.89219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.17	1	121.17	120.67	121.67	0								0	0	0	0.16337	1	44979	44979		1.1933	0.84271	1				23459	13164	17060	17178	22994	22994					0.1530412444394642
IVKKRYICWRR	11	Unmodified	_IVKKRYICWRR_					0	0	0		ENST00000531050.5_1_6:128321419-128718758:-|nuORF	ENST00000531050.5_1_6:128321419-128718758:-|nuORF	ENST00000531050.5_1_6:128321419-128718758:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	761.4277954101562	2	760.953372	1519.89219	-0.67732	-0.00051541	4.0612	0.0030904	3.3839	0.002575	760.9576837449222	113.04	0.30688	113.74	113.51	113.82	0.70985					7	5	2	0	0	0	1.0007	1	42563	42563		1.4819	1.1749	1	11986000			23460	13164	17060	17178	22995	22995					0.1530412444394642
IVKMTDVH	8	Unmodified	_IVKMTDVH_					0	0	0			REV__SAMHD1|p.L224Pfs*8|1|0.28|ENSG00000101347|chr20:36927202-36927209|GAGCAAGT/-|frameshift_variant	REV__SAMHD1|p.L224Pfs*8|1|0.28|ENSG00000101347|chr20:36927202-36927209|GAGCAAGT/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	471.65667724609375	2	471.757495	941.500437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.18	1	143.18	142.68	143.68	0								0	0	0	0.16876	1	54930	54930		2.5775	0	1		+		23461	17163	17061	17179	22996	22996					0.027347290253942447
IVKMTDVH	8	Unmodified	_IVKMTDVH_					0	0	0			REV__SAMHD1|p.L224Pfs*8|1|0.28|ENSG00000101347|chr20:36927202-36927209|GAGCAAGT/-|frameshift_variant	REV__SAMHD1|p.L224Pfs*8|1|0.28|ENSG00000101347|chr20:36927202-36927209|GAGCAAGT/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	471.6567077636719	2	471.757495	941.500437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.2	1	143.23	142.73	143.73	0.028427								0	0	0	0.16876	1	55971	55971		2.5775	0	1		+		23462	17163	17061	17179	22997	22997					0.027347290253942447
IVKRLRQKV	9	Unmodified	_IVKRLRQKV_					0	0	0			REV__ENST00000335154.9_1_12:50034901-50034994:-|nuORF	REV__ENST00000335154.9_1_12:50034901-50034994:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	569.67529296875	2	570.3904	1138.76625	-0.10707	-6.1071E-05	-2.6562	-0.0015151	-2.7633	-0.0015761	570.8882943238012	114.4	0.25447	115.11	114.93	115.19	0.70985					6	4	2	0	0	0	0.80005	1	43132	43132		0.52476	0	1	2329100	+		23463	23668	17062	17180	22998	22998					0.2024136093020843
IVKVMKIKL	9	Unmodified	_IVKVMKIKL_					0	0	0		nc|ENSG00000154655|Q8NA19|L3MBTL4;ENSG00000154655|ENST00000317931|L3MBTL4	nc|ENSG00000154655|Q8NA19|L3MBTL4	nc|ENSG00000154655|Q8NA19|L3MBTL4	MSMS	A375_MHC_IP_R2	2	357.9310607910156	3	357.915596	1070.72496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.055	1	47.816	47.316	48.316	0.76128								0	0	0	0.15486	1	17635	17635		2.4985	1.3051	1				23464	6099	17063	17181	22999	22999					0.19242463846512692
IVKYRKKK	8	Unmodified	_IVKYRKKK_					0	0	0		ENST00000566590.5_1_16:8807641-8875284:+|nuORF;ENSG00000183044|ENST00000268251|ABAT	ENST00000566590.5_1_16:8807641-8875284:+|nuORF	ENST00000566590.5_1_16:8807641-8875284:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1062.624267578125	1	1062.71461	1061.70733	-0.45063	-0.00047889	-0.94736	-0.0010068	-1.398	-0.0014857	1062.7156773770357	122.99	0.45177	122.99	122.83	123.28	0					11	8	2	0	0	0	0.7779	1	45828	45828		2.5775	0.27475	1	77345000			23465	8460	17064	17182	23000	23000					0.17894884635870767
IVKYRKKK	8	Unmodified	_IVKYRKKK_					0	0	0		ENST00000566590.5_1_16:8807641-8875284:+|nuORF;ENSG00000183044|ENST00000268251|ABAT	ENST00000566590.5_1_16:8807641-8875284:+|nuORF	ENST00000566590.5_1_16:8807641-8875284:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1062.9298095703125	1	1062.71461	1061.70733	-0.28662	-0.0003046	-1.6535	-0.0017572	-1.9401	-0.0020618	1063.7146383033798	121.86	0.70994	121.86	121.57	122.28	0					16	13	2	0	0	0	0.972	1	45402	45402		2.3027	0	1	42845000			23466	8460	17064	17182	23001	23001					0.17894884635870767
IVLARLEVFED	11	Unmodified	_IVLARLEVFED_					0	0	0			REV__ENSG00000123360|ENST00000243052|PDE1B	REV__ENSG00000123360|ENST00000243052|PDE1B	MULTI-SECPEP	A375_MHC_IP_R2	2	434.958740234375	3	435.246727	1302.71835	-0.38007	-0.00016542	0.79989	0.00034815	0.41982	0.00018272	435.2472270468793	62.406	0.25444	63.149	63.028	63.282	0.74263					6	4	2	0	0	0	0.98591	1	23631	23631		7.4771	5.3931	1	408370	+		23467	18239	17065	17183	23002	23002					0.07910197428827814
IVLDARNQI	9	Unmodified	_IVLDARNQI_					0	0	0			REV__nc|ENSG00000145103|Q86SU0-3|ILDR1	REV__nc|ENSG00000145103|Q86SU0-3|ILDR1	MULTI-SECPEP	A375_MHC_IP_R1	1	521.2081909179688	2	521.306198	1040.59784	-0.41335	-0.00021548	0.39253	0.00020463	-0.020817	-1.0852E-05	521.3061341201745	52.041	0.35777	52.041	51.879	52.237	0					10	6	2	0	0	0	0.77396	1	18434	18434		6.2058	6.2058	1	1114000	+		23468	19460	17066	17184	23003	23003					0.07916834225898128
IVLHSGQRP	9	Unmodified	_IVLHSGQRP_					0	0	0		nc|ENSG00000168631|Q3MIW9|MUCL3;ENSG00000168631|ENST00000462446|MUCL3	nc|ENSG00000168631|Q3MIW9|MUCL3	nc|ENSG00000168631|Q3MIW9|MUCL3	MSMS	A375_MHC_IP_R2	2	503.6898498535156	2	503.793258	1005.57196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.887	1	68.622	68.122	69.122	0.73511								0	0	0	0.1499	1	25726	25726		21.747	1.293	1				23469	7328	17067	17185	23004	23004					0.06939984774282948
IVLIKLLWLFR	11	Unmodified	_IVLIKLLWLFR_					0	0	0			REV__nc|ENSG00000167080|Q8NHY0|B4GALNT2	REV__nc|ENSG00000167080|Q8NHY0|B4GALNT2	MSMS	A375_MHC_IP_R1	1	471.9804382324219	3	471.982998	1412.92716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.185	1	46.185	45.685	46.685	0								0	0	0	0.1635	1	16192	16192		0.50596	0.051438	1		+		23470	20729	17068	17186	23005	23005					0.2372169052357549
IVLILMFEGIM	11	Unmodified	_IVLILMFEGIM_					0	0	0			REV__tr|U7SGP7|U7SGP7_FUSNUHolin-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02274PE=4SV=1	REV__tr|U7SGP7|U7SGP7_FUSNUHolin-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02274PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	427.3121643066406	3	426.911523	1277.71274	-0.089206	-3.8083E-05	0.74032	0.00031605	0.65112	0.00027797	426.91186704570674	91.878	0.45502	91.878	91.604	92.059	0					21	8	4	0	0	0	0.98416	1	33754	33754		7.9454	0	1	2137600	+		23471	28193	17069	17187	23006	23006					0.08499059321184177
IVLLLLLLLH	10	Unmodified	_IVLLLLLLLH_					0	0	0			REV__ENSG00000103522|ENST00000337929|IL21R	REV__ENSG00000103522|ENST00000337929|IL21R	MULTI-SECPEP	A375_MHC_IP_R2	2	580.3141479492188	2	580.412478	1158.8104	-0.23506	-0.00013643	3.0566	0.0017741	2.8215	0.0016376	580.9146454634077	88.072	0.25378	88.804	88.671	88.925	0.7318					5	4	2	0	0	0	0.95069	1	33467	33467		0	0	1	2754500	+		23472	17283	17070	17188	23007	23007					0.23734952303857426
IVLPAGALHQV	11	Unmodified	_IVLPAGALHQV_					0	0	0		ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C	ENSG00000171988|ENST00000399262|JMJD1C	ENSG00000171988|ENST00000399262|JMJD1C	MULTI-SECPEP	A375_MHC_IP_R1	1	559.7396240234375	2	559.340041	1116.66553	-0.56438	-0.00031568	-0.29431	-0.00016462	-0.85869	-0.0004803	559.3401801839973	76.436	0.35341	76.436	76.219	76.572	0					14	6	3	0	0	0	0.98524	1	27883	27883		15.248	9.5166	1	1570800			23473	7668	17071	17189	23008	23008					0.11186284156701731
IVLPAGALHQV	11	Unmodified	_IVLPAGALHQV_					0	0	0		ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C	ENSG00000171988|ENST00000399262|JMJD1C	ENSG00000171988|ENST00000399262|JMJD1C	MULTI-MSMS	A375_MHC_IP_R2	2	559.4044799804688	2	559.340041	1116.66553	-0.69466	-0.00038855	0.13881	7.7642E-05	-0.55585	-0.00031091	559.3401643701776	75.516	0.5115	76.256	75.976	76.487	0.74052					14	9	2	0	0	0	0.49816	1	28684	28684		31.268	1.0435	1	2116400			23474	7668	17071	17189	23009	23009					0.11186284156701731
IVLQEREFL	9	Unmodified	_IVLQEREFL_					0	0	0		ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-SECPEP	A375_MHC_IP_R2	2	573.6738891601562	2	573.829506	1145.64446	-0.59673	-0.00034242	0.44487	0.00025528	-0.15186	-8.7142E-05	573.829287212041	59.761	0.55526	60.509	60.198	60.753	0.74714					15	10	2	0	0	0	0.71541	1	22543	22543		16.942	7.5592	1	2849800			23475	3265	17072	17190	23010	23010					0.07746274057171831
IVLSVPHEL	9	Unmodified	_IVLSVPHEL_					0	0	0			REV__ENST00000249883.9_1_3:134075497-134075785:-|nuORF	REV__ENST00000249883.9_1_3:134075497-134075785:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	504.19989013671875	2	503.800217	1005.58588	-0.69578	-0.00035054	-0.27103	-0.00013655	-0.96682	-0.00048708	503.8000185844783	70.714	0.60667	71.448	71.149	71.756	0.73421					22	11	3	0	0	0	0.52144	1	26891	26891		16.942	0	1	11930000	+		23476	23122	17073	17191	23011	23011					0.08331217482702868
IVMAVEVFIV	10	Unmodified	_IVMAVEVFIV_					0	0	0			REV__ADAM28|p.V681E|1|0.37|ENSG00000042980|chr8:24349915-24349915|T/A|missense_variant	REV__ADAM28|p.V681E|1|0.37|ENSG00000042980|chr8:24349915-24349915|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	560.1812744140625	2	560.327753	1118.64095	-0.40265	-0.00022561	-0.20048	-0.00011234	-0.60313	-0.00033795	560.327328575549	99.489	0.91682	100.25	99.861	100.78	0.76278					35	17	3	0	0	0	0.89109	1	37891	37891		16.942	0	1	3742600	+		23477	15316	17074	17192	23012	23012					0.08637887958957435
IVMLKDTD	8	Unmodified	_IVMLKDTD_					0	0	0		nc|ENSG00000198062|Q6S545-2|POTEH;nc|ENSG00000187537|Q6S5H5-4|POTEG;nc|ENSG00000187537|Q6S5H5-2|POTEG;ENSG00000222036|ENST00000547889|POTEM;ENSG00000187537|ENST00000547848|POTEG;ENSG00000198062|ENST00000343518|POTEH;POTEM|p.D156N|1|0.14|ENSG00000222036|chr14:18967951-18967951|G/A|missense_variant;POTEG|p.M166I|1|0.18|ENSG00000187537|chr14:19433792-19433792|C/T|missense_variant;POTEG|p.D156N|1|0.08|ENSG00000187537|chr14:19433824-19433824|C/T|missense_variant;POTED|p.R162K|1|0.62|ENSG00000166351|chr21:13610713-13610713|G/A|missense_variant	nc|ENSG00000198062|Q6S545-2|POTEH	nc|ENSG00000198062|Q6S545-2|POTEH	MULTI-MSMS	A375_MHC_IP_R1	1	468.1489562988281	2	467.749336	933.484119	-0.64473	-0.00030157	-0.59571	-0.00027864	-1.2404	-0.00058021	467.74952437435195	140.19	0.82217	140.19	139.83	140.65	0					49	15	5	0	0	0	0.7779	1	53777	53777		2.5775	0	1	41368000			23478	8833	17075	17193	23013	23013					0.014716030686258819
IVMLKDTD	8	Unmodified	_IVMLKDTD_					0	0	0		nc|ENSG00000198062|Q6S545-2|POTEH;nc|ENSG00000187537|Q6S5H5-4|POTEG;nc|ENSG00000187537|Q6S5H5-2|POTEG;ENSG00000222036|ENST00000547889|POTEM;ENSG00000187537|ENST00000547848|POTEG;ENSG00000198062|ENST00000343518|POTEH;POTEM|p.D156N|1|0.14|ENSG00000222036|chr14:18967951-18967951|G/A|missense_variant;POTEG|p.M166I|1|0.18|ENSG00000187537|chr14:19433792-19433792|C/T|missense_variant;POTEG|p.D156N|1|0.08|ENSG00000187537|chr14:19433824-19433824|C/T|missense_variant;POTED|p.R162K|1|0.62|ENSG00000166351|chr21:13610713-13610713|G/A|missense_variant	nc|ENSG00000198062|Q6S545-2|POTEH	nc|ENSG00000198062|Q6S545-2|POTEH	MULTI-MSMS	A375_MHC_IP_R2	2	468.1494445800781	2	467.749336	933.484119	-0.43789	-0.00020482	-0.86617	-0.00040515	-1.3041	-0.00060997	467.7492987948358	139.92	0.86987	139.98	139.75	140.62	0.059906					54	16	4	0	0	0	0.7779	2	54764	54764;54780		2.5775	0	1	46807000			23479	8833	17075	17193	23014;23015	23014					0.014716030686258819
IVMMLASF	8	Unmodified	_IVMMLASF_					0	0	0			REV__ENSG00000023839|ENST00000647814|ABCC2	REV__ENSG00000023839|ENST00000647814|ABCC2	MULTI-MSMS	A375_MHC_IP_R1	1	456.6403503417969	2	456.240092	910.465632	-0.1841	-8.3994E-05	0.72808	0.00033218	0.54398	0.00024818	456.24042240095594	79.444	0.46257	79.444	79.214	79.676	0					13	8	2	0	0	0	0.7479	1	29005	29005		20.871	8.3397	1	1829400	+		23480	16283	17076	17194	23016	23016					0.006817698930831284
IVMMLASF	8	Unmodified	_IVMMLASF_					0	0	0			REV__ENSG00000023839|ENST00000647814|ABCC2	REV__ENSG00000023839|ENST00000647814|ABCC2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	456.240092	910.465632	-0.1841	-8.3994E-05	0.72808	0.00033218	0.54398	0.00024818	456.24042240095594	79.444	0.46257	79.444	79.214	79.676	0	0.09867	-5.7126E-05	NaN	20.871	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1829400	+		23481	16283	17076	17194							0.006817698930831284
IVMMLASF	8	Unmodified	_IVMMLASF_					0	0	0			REV__ENSG00000023839|ENST00000647814|ABCC2	REV__ENSG00000023839|ENST00000647814|ABCC2	MULTI-MATCH	A375_MHC_IP_R2	2		2	456.240092	910.465632	-0.1896	-8.6503E-05	0.91015	0.00041525	0.72055	0.00032874	456.2405764690683	78.502	0.40518	79.247	79.084	79.489	0.74473	-0.09867	0.00010901	NaN	20.871	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1676600	+		23482	16283	17076	17194							0.006817698930831284
IVMQEVETV	9	Unmodified	_IVMQEVETV_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R1	1	524.6728515625	2	524.273175	1046.5318	-0.48756	-0.00025562	1.1124	0.0005832	0.62483	0.00032758	524.2729645088989	74.163	0.6601	74.163	73.893	74.553	0					39	12	5	0	0	0	0.082375	1	27005	27005		53.833	15.859	1	3802800			23483	9114	17077	17195	23017	23017					0.01039257268826077
IVMRELMSRS	10	Unmodified	_IVMRELMSRS_					0	0	0			REV__ENST00000271638.2_1_1:152006158-152006227:-|nuORF	REV__ENST00000271638.2_1_1:152006158-152006227:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	611.7262573242188	2	611.32575	1220.63695	-0.44396	-0.0002714	-0.072373	-4.4243E-05	-0.51633	-0.00031565	611.3255603736471	129.12	1.121	129.12	128.68	129.8	0					51	21	3	0	0	0	0.72078	1	49521	49521		2.9952	2.9952	1	23562000	+		23484	23275	17078	17196	23018	23018					0.03545475193618586
IVNGAYEIV	9	Unmodified	_IVNGAYEIV_					0	0	0			REV__ENST00000525408.1_1_11:118390286-118392884:+|nuORF	REV__ENST00000525408.1_1_11:118390286-118392884:+|nuORF	MSMS	A375_MHC_IP_R2	2	489.17633056640625	2	489.26875	976.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.891	1	88.623	88.123	89.123	0.7318								0	0	0	0.13805	1	33438	33438		30.225	1.738	1		+		23485	18027	17079	17197	23019	23019					0.03374651694662134
IVNGPPKR	8	Unmodified	_IVNGPPKR_					0	0	0			REV__ENSG00000010818|ENST00000367603|HIVEP2	REV__ENSG00000010818|ENST00000367603|HIVEP2	MULTI-SECPEP	A375_MHC_IP_R2	2	440.2980041503906	2	440.771794	879.529036	-0.40478	-0.00017841	0.25073	0.00011051	-0.15405	-6.7902E-05	440.77175197481284	32.857	0.25414	33.594	33.468	33.722	0.73692					7	4	2	0	0	0	0.972	1	11715	11715		4.756	2.4533	1	1693000	+		23486	16199	17080	17198	23020	23020					0.08445214716846294
IVNIKSIDYF	10	Unmodified	_IVNIKSIDYF_					0	0	0			REV__tr|U7SZM9|U7SZM9_FUSNUPhagehead-tailadapterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00803PE=4SV=1	REV__tr|U7SZM9|U7SZM9_FUSNUPhagehead-tailadapterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00803PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	404.33929443359375	3	404.560535	1210.65977	-0.24801	-0.00010034	-0.12536	-5.0716E-05	-0.37337	-0.00015105	404.89481601084975	57.906	0.3519	58.655	58.477	58.829	0.74894					11	6	2	0	0	0	0.94587	1	21867	21867		1.9064	0	1	1418600	+		23487	28654	17081	17199	23021	23021					0.06287140854374229
IVNISKIEARE	11	Unmodified	_IVNISKIEARE_					0	0	0		tr|U7SHB1|U7SHB1_FUSNUAlkalineshockresponsemembraneanchorproteinAmaPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02326PE=4SV=1	tr|U7SHB1|U7SHB1_FUSNUAlkalineshockresponsemembraneanchorproteinAmaPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02326PE=4SV=1	tr|U7SHB1|U7SHB1_FUSNUAlkalineshockresponsemembraneanchorproteinAmaPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02326PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	636.7684936523438	2	636.369527	1270.7245	-1.0417	-0.00066293	0.21409	0.00013624	-0.82765	-0.00052669	636.3694112871333	149.4	1.7393	149.4	148.26	150	0					154	57	4	0	0	0	0.73647	1	57022	57022		2.7352	1.5419	1	545220			23488	29420	17082	17200	23022	23022					0.09996715660349764
IVNISKIEARE	11	Unmodified	_IVNISKIEARE_					0	0	0		tr|U7SHB1|U7SHB1_FUSNUAlkalineshockresponsemembraneanchorproteinAmaPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02326PE=4SV=1	tr|U7SHB1|U7SHB1_FUSNUAlkalineshockresponsemembraneanchorproteinAmaPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02326PE=4SV=1	tr|U7SHB1|U7SHB1_FUSNUAlkalineshockresponsemembraneanchorproteinAmaPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02326PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	636.7681274414062	2	636.369527	1270.7245	-0.59249	-0.00037704	-0.3355	-0.0002135	-0.92799	-0.00059054	636.3691547482736	149.46	1.5337	149.48	148.48	150.01	0.01825					161	58	3	0	0	0	0.73647	2	57844	57844;57995		2.7352	1.5419	1	537760			23489	29420	17082	17200	23023;23024	23023					0.09996715660349764
IVNKEKFYNFL	11	Unmodified	_IVNKEKFYNFL_					0	0	0		tr|U7SQP2|U7SQP2_FUSNUGlycosyltransferase2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01646PE=4SV=1	tr|U7SQP2|U7SQP2_FUSNUGlycosyltransferase2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01646PE=4SV=1	tr|U7SQP2|U7SQP2_FUSNUGlycosyltransferase2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01646PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	472.68798828125	3	472.262489	1413.76564	-0.56025	-0.00026459	1.3185	0.00062269	0.75826	0.0003581	472.2629929123651	131.34	0.6113	131.53	131.24	131.85	0.18953					17	11	3	0	0	0	1.0004	1	51568	51568		1.2148	0.70888	1	2308000			23490	29591	17083	17201	23025	23025					0.07530476699866995
IVNNSSDYY	9	Unmodified	_IVNNSSDYY_					0	0	0			REV__ENSG00000183682|ENST00000331593|BMP8A	REV__ENSG00000183682|ENST00000331593|BMP8A	MSMS	A375_MHC_IP_R2	2	537.7081909179688	2	537.740554	1073.46655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.404	1	59.153	58.653	59.653	0.74894								0	0	0	0.15486	1	22098	22098		8.5933	1.304	1		+		23491	17985	17084	17202	23026	23026					-0.06724020932665553
IVNPHLRP	8	Unmodified	_IVNPHLRP_					0	0	0		nc|ENSG00000115423|Q9C0G6-4|DNAH6;ENSG00000115423|ENST00000389394|DNAH6	nc|ENSG00000115423|Q9C0G6-4|DNAH6	nc|ENSG00000115423|Q9C0G6-4|DNAH6	MULTI-MSMS	A375_MHC_IP_R2	2	473.6847839355469	2	473.285069	944.555585	-0.83875	-0.00039697	0.088694	4.1978E-05	-0.75005	-0.00035499	473.2850922732077	49.721	0.56013	50.475	50.244	50.804	0.75406					21	10	3	0	0	0	0.7338	1	18685	18685		24.674	24.674	1	5206500			23492	3308	17085	17203	23027	23027					0.08108903608172113
IVNPHLRP	8	Unmodified	_IVNPHLRP_					0	0	0		nc|ENSG00000115423|Q9C0G6-4|DNAH6;ENSG00000115423|ENST00000389394|DNAH6	nc|ENSG00000115423|Q9C0G6-4|DNAH6	nc|ENSG00000115423|Q9C0G6-4|DNAH6	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	473.285069	944.555585	-0.83875	-0.00039697	0.088694	4.1978E-05	-0.75005	-0.00035499	473.2850922732077	49.721	0.56013	50.475	50.244	50.804	0.75406	-0.15836	4.6219E-07	NaN	24.674	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5206500			23493	3308	17085	17203							0.08108903608172113
IVNQDGFYY	9	Unmodified	_IVNQDGFYY_					0	0	0		nc|ENSG00000120659|O14788-2|TNFSF11;nc|ENSG00000120659|O14788-3|TNFSF11;ENSG00000120659|ENST00000398795|TNFSF11	nc|ENSG00000120659|O14788-2|TNFSF11	nc|ENSG00000120659|O14788-2|TNFSF11	MSMS	A375_MHC_IP_R1	1	559.7396240234375	2	559.761289	1117.50803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.49	1	76.49	75.99	76.99	0								0	0	0	0.1521	1	27883	27883		18.135	5.6034	1				23494	3672	17086	17204	23028	23028					-0.04602840173333789
IVPASPAEKLS	11	Unmodified	_IVPASPAEKLS_					0	0	0			REV__CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant	REV__CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	371.25250244140625	3	371.216768	1110.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.665	1	20.665	20.165	21.165	0								0	0	0	0.16224	1	5338	5338		7.0371	2.3212	1		+		23495	15626	17087	17205	23029	23029					0.07758567820292228
IVPENDSHS	9	Unmodified	_IVPENDSHS_					0	0	0			REV__ENSG00000086570|ENST00000261800|FAT2	REV__ENSG00000086570|ENST00000261800|FAT2	MSMS	A375_MHC_IP_R1	1	499.1202392578125	2	499.232896	996.451239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.632	1	99.632	99.132	100.13	0								0	0	0	0.15486	1	36602	36602		10.824	0.64053	1		+		23496	16857	17088	17206	23030	23030					-0.047128877298519
IVPPRSNSVLW	11	Unmodified	_IVPPRSNSVLW_					0	0	0			REV__chr7:2278305-2290241|108|12.73|0.08|7.29|-|0|TE_info:AluSz6,AluSz6_dup17644,Alu,SINE,donor,+,2290241,2290532|SNX8,None|8	REV__chr7:2278305-2290241|108|12.73|0.08|7.29|-|0|TE_info:AluSz6,AluSz6_dup17644,Alu,SINE,donor,+,2290241,2290532|SNX8,None|8	MULTI-MSMS	A375_MHC_IP_R1	1	635.2627563476562	2	634.361505	1266.70846	-0.5149	-0.00032663	0.56453	0.00035812	0.049634	3.1486E-05	634.3616633603192	106.09	0.56261	106.09	105.81	106.37	0					22	10	3	0	0	0	0.69231	1	38928	38928		16.149	7.4037	1	4004400	+		23497	15773	17089	17207	23031	23031					0.0857705421412902
IVPPRSNSVLW	11	Unmodified	_IVPPRSNSVLW_					0	0	0			REV__chr7:2278305-2290241|108|12.73|0.08|7.29|-|0|TE_info:AluSz6,AluSz6_dup17644,Alu,SINE,donor,+,2290241,2290532|SNX8,None|8	REV__chr7:2278305-2290241|108|12.73|0.08|7.29|-|0|TE_info:AluSz6,AluSz6_dup17644,Alu,SINE,donor,+,2290241,2290532|SNX8,None|8	MULTI-MSMS	A375_MHC_IP_R2	2	634.761474609375	2	634.361505	1266.70846	-0.7455	-0.00047291	-0.28616	-0.00018153	-1.0317	-0.00065444	634.3611492451784	105.15	0.50854	105.92	105.67	106.17	0.76308					20	9	3	0	0	0	0.57844	1	39756	39756		24.991	11.085	1	2188100	+		23498	15773	17089	17207	23032	23032					0.0857705421412902
IVPPRSNSVLW	11	Unmodified	_IVPPRSNSVLW_					0	0	0			REV__chr7:2278305-2290241|108|12.73|0.08|7.29|-|0|TE_info:AluSz6,AluSz6_dup17644,Alu,SINE,donor,+,2290241,2290532|SNX8,None|8	REV__chr7:2278305-2290241|108|12.73|0.08|7.29|-|0|TE_info:AluSz6,AluSz6_dup17644,Alu,SINE,donor,+,2290241,2290532|SNX8,None|8	MULTI-SECPEP	A375_MHC_IP_R2	2	634.990478515625	2	634.361505	1266.70846	-0.7455	-0.00047291	-0.28616	-0.00018153	-1.0317	-0.00065444	634.3611492451784	105.15	0.50854	105.92	105.67	106.17	0.76308					20	9	3	0	0	0	0.90673	1	39798	39798		23.79	6.6769	1	2188100	+		23499	15773	17089	17207	23033	23033					0.0857705421412902
IVPPRSNSVLW	11	Unmodified	_IVPPRSNSVLW_					0	0	0			REV__chr7:2278305-2290241|108|12.73|0.08|7.29|-|0|TE_info:AluSz6,AluSz6_dup17644,Alu,SINE,donor,+,2290241,2290532|SNX8,None|8	REV__chr7:2278305-2290241|108|12.73|0.08|7.29|-|0|TE_info:AluSz6,AluSz6_dup17644,Alu,SINE,donor,+,2290241,2290532|SNX8,None|8	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	634.361505	1266.70846	-0.5149	-0.00032663	0.56453	0.00035812	0.049634	3.1486E-05	634.3616633603192	106.09	0.56261	106.09	105.81	106.37	0	0.084002	0.00047701	NaN	24.991	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4004400	+		23500	15773	17089	17207							0.0857705421412902
IVPYCGQITF	10	Unmodified	_IVPYCGQITF_					0	0	0			REV__ENSG00000214021|ENST00000685419|TTLL3	REV__ENSG00000214021|ENST00000685419|TTLL3	MULTI-MSMS	A375_MHC_IP_R2	2	380.9296875	3	380.863449	1139.56852	-0.20385	-7.7639E-05	1.2437	0.00047368	1.0398	0.00039604	380.86430043961633	66.105	0.30624	66.843	66.577	66.884	0.73811					7	5	2	0	0	0	0.70146	1	25048	25048		10.151	2.6735	1	626760	+		23501	22641	17090	17208	23034	23034					0.004315538853916223
IVQADRKSF	9	Unmodified	_IVQADRKSF_					0	0	0			REV__nc|ENSG00000204161|Q5T292|TMEM273	REV__nc|ENSG00000204161|Q5T292|TMEM273	MULTI-MSMS	A375_MHC_IP_R2	2	355.579345703125	3	355.201341	1062.58219	-0.62015	-0.00022028	-3.7512	-0.0013324	-4.3713	-0.0015527	355.5332176100975	26.284	0.5591	26.944	26.754	27.313	0.65992					21	10	3	0	0	0	0.65721	1	8886	8886		7.1017	0	1	3385700	+		23502	27453	17091	17209	23035	23035					0.053405477088290354
IVQKLTQN	8	Unmodified	_IVQKLTQN_					0	0	0			REV__nc|ENSG00000152527|Q8IVE3-2|PLEKHH2	REV__nc|ENSG00000152527|Q8IVE3-2|PLEKHH2	MSMS	A375_MHC_IP_R2	2	472.2203369140625	2	472.282192	942.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.528	1	45.297	44.797	45.797	0.7691								0	0	0	0.16876	1	16621	16621		18.135	0	1		+		23503	19806	17092	17210	23036	23036					0.07625760305847962
IVQLLVFPLWT	11	Unmodified	_IVQLLVFPLWT_					0	0	0			REV__ENSG00000173890|ENST00000355897|GPR160	REV__ENSG00000173890|ENST00000355897|GPR160	MULTI-SECPEP	A375_MHC_IP_R2	2	664.12646484375	2	664.902474	1327.7904	-0.72604	-0.00048275	-3.365	-0.0022374	-4.091	-0.0027201	664.8998892464853	134.51	0.30476	134.65	134.55	134.85	0.13901					8	5	2	0	0	0	0.99676	1	52941	52941		5.7319	4.6604	1	1020400	+		23504	21252	17093	17211	23037	23037					0.13961156573213884
IVRCLPQPV	9	Unmodified	_IVRCLPQPV_					0	0	0			REV__ENSG00000130589|ENST00000467148|HELZ2	REV__ENSG00000130589|ENST00000467148|HELZ2	MULTI-SECPEP	A375_MHC_IP_R1	1	512.7005615234375	2	512.802237	1023.58992	-0.42018	-0.00021547	-0.89779	-0.00046039	-1.318	-0.00067586	512.8023611519833	40.381	0.3057	40.381	40.203	40.509	0					7	5	2	0	0	0	0.77244	1	13883	13883		0.6015	0	1	1625500	+		23505	18549	17094	17212	23038	23038					0.0790698370476548
IVRGDLRHE	9	Unmodified	_IVRGDLRHE_					0	0	0			REV__nc|ENSG00000197451|Q99729-3|HNRNPAB	REV__nc|ENSG00000197451|Q99729-3|HNRNPAB	MULTI-MSMS	A375_MHC_IP_R2	2	365.606201171875	3	365.540357	1093.59924	-0.16001	-5.8491E-05	0.69355	0.00025352	0.53354	0.00019503	365.54061525326654	41.349	0.50602	42.124	41.743	42.249	0.77451					15	9	2	0	0	0	0.62591	1	15318	15318		13.615	0.5724	1	4828600	+		23506	22290	17095	17213	23039	23039					0.056184683146511816
IVRGGGKIL	9	Unmodified	_IVRGGGKIL_					0	0	0		ENST00000508061.6_1_4:81106618-81115270:+|nuORF	ENST00000508061.6_1_4:81106618-81115270:+|nuORF	ENST00000508061.6_1_4:81106618-81115270:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	457.20306396484375	2	456.803094	911.591636	-0.29755	-0.00013592	0.13514	6.1731E-05	-0.16241	-7.4191E-05	456.80316329198297	47.237	0.36145	47.237	47.055	47.416	0					10	6	2	0	0	0	0.13491	1	16626	16626		44.407	2.3125	1	1954900			23507	12870	17096	17214	23040	23040					0.1323036078503037
IVRGMDLQV	9	Unmodified	_IVRGMDLQV_					0	0	0			REV__nc|ENSG00000198216|Q15878-2|CACNA1E	REV__nc|ENSG00000198216|Q15878-2|CACNA1E	MSMS	A375_MHC_IP_R1	1	515.7097778320312	2	515.789327	1029.5641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.077	1	72.077	71.577	72.577	0								0	0	0	0.15486	1	26213	26213		12.241	0	1		+		23508	22353	17097	17215	23041	23041					0.05050089462474716
IVRGRQLDR	9	Unmodified	_IVRGRQLDR_					0	0	0			REV__ENSG00000270885|ENST00000603017|RASL10B	REV__ENSG00000270885|ENST00000603017|RASL10B	MULTI-SECPEP	A375_MHC_IP_R2	2	370.9413146972656	3	371.559751	1111.65742	0.16084	5.976E-05	-0.7094	-0.00026358	-0.54856	-0.00020382	371.55952672512996	18.973	0.23048	19.576	19.452	19.683	0.60308					6	4	2	0	0	0	0.79713	1	5712	5712		6.6304	0	1	3917500	+		23509	22944	17098	17216	23042	23042					0.10606149959903632
IVRLIHFPL	9	Unmodified	_IVRLIHFPL_					0	0	0			REV__ENSG00000165621|ENST00000541038|OXGR1	REV__ENSG00000165621|ENST00000541038|OXGR1	MULTI-MSMS	A375_MHC_IP_R1	1	369.9488525390625	3	369.906088	1106.69644	0.50285	0.00018601	0.94508	0.00034959	1.4479	0.0005356	369.90637702401295	42.743	0.45549	42.743	42.537	42.993	0					13	8	2	0	0	0	0.71416	1	14826	14826		5.7319	2.7366	1	1155000	+		23510	20599	17099	17217	23043	23043					0.14735482261608013
IVRLIHFPL	9	Unmodified	_IVRLIHFPL_					0	0	0			REV__ENSG00000165621|ENST00000541038|OXGR1	REV__ENSG00000165621|ENST00000541038|OXGR1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	369.906088	1106.69644	0.50285	0.00018601	0.94508	0.00034959	1.4479	0.0005356	369.90637702401295	42.743	0.45549	42.743	42.537	42.993	0	0	0	NaN	5.7319	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1155000	+		23511	20599	17099	17217							0.14735482261608013
IVRNLMESL	9	Unmodified	_IVRNLMESL_					0	0	0		nc|ENSG00000197442|Q99683-2|MAP3K5;ENSG00000197442|ENST00000359015|MAP3K5	nc|ENSG00000197442|Q99683-2|MAP3K5	nc|ENSG00000197442|Q99683-2|MAP3K5	MULTI-SECPEP	A375_MHC_IP_R2	2	538.1241455078125	2	537.802434	1073.59032	-0.81922	-0.00044058	-1.3646	-0.00073387	-2.1838	-0.0011745	537.8013249061956	95.945	0.45726	96.696	96.449	96.906	0.75045					9	8	2	0	0	0	0.69504	1	36414	36414		7.9102	0	1	772300			23512	9159	17100	17218	23044	23044					0.056463586339759786
IVRNYAKLRKW	11	Unmodified	_IVRNYAKLRKW_					0	0	0			REV__ENST00000476962.1_1_10:45953689-45956918:-|nuORF	REV__ENST00000476962.1_1_10:45953689-45956918:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	362.9689636230469	4	362.472761	1445.86194	-0.021944	-7.9542E-06	-2.5552	-0.00092618	-2.5771	-0.00093413	362.4716694948057	19.243	0.24938	19.243	19.221	19.471	0					9	6	2	0	0	0	0.99732	1	4788	4788		6.6235	3.5512	1	31994000	+		23513	20579	17101	17219	23045	23045					0.15684089050432704
IVRPSSSTKT	10	Unmodified	_IVRPSSSTKT_					0	0	0		ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C	ENSG00000171988|ENST00000399262|JMJD1C	ENSG00000171988|ENST00000399262|JMJD1C	MULTI-MSMS	A375_MHC_IP_R1	1	538.7085571289062	2	538.308938	1074.60332	-0.25432	-0.0001369	-0.19978	-0.00010754	-0.45409	-0.00024444	538.3087595484245	127.22	0.75871	127.22	126.91	127.67	0					22	14	2	0	0	0	0.71245	1	48671	48671		6.7232	1.4925	1	8513300			23514	7668	17102	17220	23046	23046					0.06900513017717458
IVRPVNAI	8	Unmodified	_IVRPVNAI_					0	0	0		tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	441.1513671875	2	441.281995	880.549437	-0.51512	-0.00022731	-0.095417	-4.2106E-05	-0.61054	-0.00026942	441.2819103639361	54.711	0.40804	55.461	55.269	55.678	0.75075					11	7	2	0	0	0	0.93416	1	20692	20692		9.3474	0.75416	1	2640200			23515	29629	17103	17221	23047	23047					0.10438385376642145
IVRSYPPDLF	10	Unmodified	_IVRSYPPDLF_					0	0	0			REV__nc|ENSG00000198961|O43164-2|PJA2	REV__nc|ENSG00000198961|O43164-2|PJA2	MSMS	A375_MHC_IP_R2	2	402.9212951660156	3	402.888763	1205.64446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.802	1	39.576	39.076	40.076	0.77451								0	0	0	0.15475	1	14301	14301		5.4027	1.8062	1		+		23516	22458	17104	17222	23048	23048					0.0498627405715979
IVRVRVIRSN	10	Unmodified	_IVRVRVIRSN_					0	0	0			REV__ENSG00000069869|ENST00000435532|NEDD4	REV__ENSG00000069869|ENST00000435532|NEDD4	MSMS	A375_MHC_IP_R2	2	606.7894287109375	2	606.388388	1210.76222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.08	1	144.1	143.6	144.6	0.024414								0	0	0	0.15531	1	56290	56290		3.5965	0.60125	1		+		23517	16560	17105	17223	23049	23049					0.16527271436507363
IVSHPHPLH	9	Unmodified	_IVSHPHPLH_					0	0	0			REV__nc|ENSG00000184922|O95466-3|FMNL1	REV__nc|ENSG00000184922|O95466-3|FMNL1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1868896484375	2	518.787976	1035.5614	-0.92595	-0.00048037	-1.4584	-0.00075658	-2.3843	-0.001237	518.7872970577365	35.477	0.50674	36.241	36.03	36.537	0.76338					15	9	2	0	0	0	0.65246	1	12867	12867		21.747	0	1	2339200	+		23518	27410	17106	17224	23050	23050					0.045040021198246905
IVSLKFKRE	9	Unmodified	_IVSLKFKRE_					0	0	0			REV__SERPINB7|p.N215K|1|0.3|ENSG00000166396|chr18:63800913-63800913|T/A|missense_variant	REV__SERPINB7|p.N215K|1|0.3|ENSG00000166396|chr18:63800913-63800913|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	374.30108642578125	3	373.901003	1118.68118	0.28934	0.00010818	-0.14258	-5.3312E-05	0.14675	5.4872E-05	373.9008898750748	32.019	0.46136	32.019	31.769	32.231	0					15	8	2	0	0	0	0.67152	1	10306	10306		9.544	0.56773	1	5062300	+		23519	27943	17107	17225	23051	23051					0.1265857067376146
IVSRSILAPN	10	Unmodified	_IVSRSILAPN_					0	0	0			REV__ENSG00000153002|ENST00000282957|CPB1	REV__ENSG00000153002|ENST00000282957|CPB1	MULTI-SECPEP	A375_MHC_IP_R1	1	535.6927490234375	2	535.321848	1068.62914	-0.89389	-0.00047852	0.09245	4.9491E-05	-0.80144	-0.00042903	535.3220047246795	36.414	0.30482	36.414	36.236	36.541	0					9	5	2	0	0	0	0.92957	1	12135	12135		1.3295	0.92882	1	1693800	+		23520	19821	17108	17226	23052	23052					0.09757407259985484
IVTPEDALY	9	Unmodified	_IVTPEDALY_					0	0	0		ENSG00000112303|ENST00000326499|VNN2;nc|ENSG00000112303|O95498-5|VNN2;VNN2|p.V93Ffs*54|1|0.24|ENSG00000112303|chr6:132757482-132757483|AC/-|frameshift_variant;nc|ENSG00000112303|O95498-3|VNN2;nc|ENSG00000112303|O95498-4|VNN2;ENST00000526192.1_1_6:133074642-133078971:-|nuORF;nc|ENSG00000112303|O95498-2|VNN2;nc|ENSG00000112303|O95498-6|VNN2	ENSG00000112303|ENST00000326499|VNN2	ENSG00000112303|ENST00000326499|VNN2	MULTI-SECPEP	A375_MHC_IP_R1	1	510.71014404296875	2	510.76604	1019.51753	-0.2979	-0.00015216	-0.13844	-7.0711E-05	-0.43634	-0.00022287	510.7658930810589	111.3	0.56406	111.3	111.05	111.62	0					24	10	3	0	0	0	0.36419	1	40890	40890		32.117	0	1	4203500			23521	3072	17109	17227	23053	23053					0.00854928112187281
IVVAYFLSW	9	Unmodified	_IVVAYFLSW_					0	0	0		ENSG00000173578|ENST00000309285|XCR1	ENSG00000173578|ENST00000309285|XCR1	ENSG00000173578|ENST00000309285|XCR1	MULTI-SECPEP	A375_MHC_IP_R1	1	549.7025756835938	2	549.305136	1096.59572	-0.33506	-0.00018405	-3.382	-0.0018577	-3.7171	-0.0020418	549.3036554914257	69.034	0.60896	69.034	68.666	69.275	0					17	11	2	0	0	0	0.62767	1	25062	25062		16.942	3.4344	1	1283600			23522	7812	17110	17228	23054	23054					0.05128405488062526
IVVDERRAV	9	Unmodified	_IVVDERRAV_					0	0	0		nc|ENSG00000196535|Q92614-5|MYO18A;nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A	nc|ENSG00000196535|Q92614-5|MYO18A	nc|ENSG00000196535|Q92614-5|MYO18A	MULTI-SECPEP	A375_MHC_IP_R2	2	353.6107482910156	3	352.876857	1055.60874	-0.1867	-6.5882E-05	-0.33882	-0.00011956	-0.52552	-0.00018545	352.8767808662244	41.958	0.86923	42.733	42.401	43.27	0.77451					39	16	4	0	0	0	0.35487	1	15577	15577		33.445	0	1	22801000			23523	9054	17111	17229	23055	23055					0.08316236600171578
IVVDNVPQV	9	Unmodified	_IVVDNVPQV_					0	0	0		ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	MULTI-SECPEP	A375_MHC_IP_R1	1	492.1815185546875	2	491.782025	981.549496	-0.37843	-0.00018611	-0.19048	-9.3677E-05	-0.56891	-0.00027978	491.7819535404342	77.159	0.81383	77.159	76.673	77.486	0					23	15	3	0	0	0	0.41434	1	28141	28141		39.95	23.801	1	1883000			23524	2677	17112	17230	23056	23056					0.05798340585988626
IVVDNVPQV	9	Unmodified	_IVVDNVPQV_					0	0	0		ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	MULTI-SECPEP	A375_MHC_IP_R2	2	492.1819152832031	2	491.782025	981.549496	-0.51711	-0.00025431	-0.21784	-0.00010713	-0.73495	-0.00036143	491.7818269111038	76.453	0.50806	77.193	76.943	77.451	0.74052					17	9	2	0	0	0	0.16229	1	29056	29056		39.957	5.5556	1	1871000			23525	2677	17112	17230	23057	23057					0.05798340585988626
IVVILVLRIAK	11	Unmodified	_IVVILVLRIAK_					0	0	0			REV__nc|ENSG00000179934|P51685-2|CCR8	REV__nc|ENSG00000179934|P51685-2|CCR8	MSMS	A375_MHC_IP_R1	1	412.97491455078125	3	412.963715	1235.86931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.553	1	19.553	19.053	20.053	0								0	0	0	0.16352	1	4883	4883		0.40827	0.32491	1		+		23526	21589	17113	17231	23058	23058					0.2608142859817235
IVVISCLVCL	10	Unmodified	_IVVISCLVCL_					0	0	0		ENST00000466317.1_1_17:17124591-17124780:-|nuORF	ENST00000466317.1_1_17:17124591-17124780:-|nuORF	ENST00000466317.1_1_17:17124591-17124780:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	530.68212890625	2	531.308506	1060.60246	-0.94069	-0.0004998	1.2549	0.00066675	0.31423	0.00016695	531.3089499149386	49.626	0.5579	50.383	50.095	50.653	0.75667					22	10	3	0	0	0	0.73628	1	18650	18650		21.747	13.836	1	1669400			23527	12258	17114	17232	23059	23059					0.0745825905280526
IVVLSVLLVLY	11	Unmodified	_IVVLSVLLVLY_					0	0	0			REV__nc|ENSG00000134294|Q96QD8-2|SLC38A2	REV__nc|ENSG00000134294|Q96QD8-2|SLC38A2	MSMS	A375_MHC_IP_R2	2	615.9888916015625	2	615.907225	1229.7999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.768	1	74.504	74.004	75.004	0.73541								0	0	0	0.1629	1	28000	28000		3.5965	0	1		+		23528	18769	17115	17233	23060	23060					0.19418924858746323
IVWDEKKNQW	10	Unmodified	_IVWDEKKNQW_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MULTI-MSMS	A375_MHC_IP_R1	1	449.634765625	3	449.234822	1344.68264	0.17909	8.0455E-05	-0.2182	-9.8024E-05	-0.039109	-1.7569E-05	449.56898217139747	49.617	0.56005	49.617	49.387	49.947	0					19	10	3	0	0	0	0.33943	1	17565	17565		37.771	25.544	1	2793400			23529	14669	17116	17234	23061	23061					0.02408159971855639
IVWDEKKNQW	10	Unmodified	_IVWDEKKNQW_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MULTI-SECPEP	A375_MHC_IP_R2	2	449.9690856933594	3	449.234822	1344.68264	-0.42341	-0.00019021	-0.043767	-1.9662E-05	-0.46718	-0.00020987	449.2347152007079	48.836	0.45986	49.593	49.332	49.792	0.75736					14	8	2	0	0	0	0.5901	1	18365	18365		37.771	21.497	1	3318800			23530	14669	17116	17234	23062	23062					0.02408159971855639
IVWNGPVGV	9	Unmodified	_IVWNGPVGV_					0	0	0		nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1	nc|ENSG00000102144|P00558-2|PGK1	nc|ENSG00000102144|P00558-2|PGK1	MULTI-MSMS	A375_MHC_IP_R1	1	941.2886352539062	1	940.525079	939.517802	0.032424	3.0496E-05	0.21593	0.00020309	0.24836	0.00023359	940.5250708820423	100.76	0.60747	100.76	100.53	101.14	0					18	11	2	0	0	0	0.042197	2	37124	37124;37137		67.344	47.905	1	5069900			23531	2359	17117	17235	23063;23064	23063					0.045623926227222
IVWNGPVGV	9	Unmodified	_IVWNGPVGV_					0	0	0		nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1	nc|ENSG00000102144|P00558-2|PGK1	nc|ENSG00000102144|P00558-2|PGK1	MULTI-MATCH	A375_MHC_IP_R2	2		1	940.525079	939.517802	0.01649	1.5509E-05	-0.12308	-0.00011576	-0.10659	-0.00010025	940.5247404764417	99.99	0.55918	100.75	100.52	101.08	0.76278	-0.0045664	-9.6359E-05	NaN	67.344	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4891300			23532	2359	17117	17235							0.045623926227222
IVYDAVGQLFY	11	Unmodified	_IVYDAVGQLFY_					0	0	0			REV__tr|U7T607|U7T607_FUSNUDUF4261domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00327PE=4SV=1	REV__tr|U7T607|U7T607_FUSNUDUF4261domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00327PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	430.6223449707031	3	429.892173	1286.65469	-0.19116	-8.2177E-05	1.3856	0.00059565	1.1944	0.00051347	429.89288475785713	58.27	0.65902	58.27	57.822	58.481	0					14	12	2	0	0	0	0.99676	1	20858	20858		2.6312	2.223	1	1269100	+		23533	28850	17118	17236	23065	23065					0.022828369917760938
IVYKKNKDFR	10	Unmodified	_IVYKKNKDFR_					0	0	0			REV__tr|U7SPW6|U7SPW6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01645PE=4SV=1	REV__tr|U7SPW6|U7SPW6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01645PE=4SV=1	MSMS	A375_MHC_IP_R1	1	437.6540832519531	3	437.590828	1309.75066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.69	1	140.69	140.19	141.19	0								0	0	0	0.15596	1	54028	54028		0.62683	0	1		+		23534	28368	17119	17237	23066	23066					0.10817029622512564
IVYYYRKHTKI	11	Unmodified	_IVYYYRKHTKI_					0	0	0		ENSG00000268988|ENST00000598475|SPANXN2	ENSG00000268988|ENST00000598475|SPANXN2	ENSG00000268988|ENST00000598475|SPANXN2	MULTI-MSMS	A375_MHC_IP_R1	1	495.666259765625	3	495.285516	1482.83472	-0.64205	-0.000318	-3.6663	-0.0018159	-4.3083	-0.0021338	495.6184523485175	39.744	0.30403	39.744	39.592	39.896	0					9	5	2	0	0	0	0.73658	1	13642	13642		2.6312	0.19645	1	1981900			23535	9975	17120	17238	23067	23067					0.11261560719412955
IWDVYNYVKTY	11	Unmodified	_IWDVYNYVKTY_					0	0	0			REV__nc|ENSG00000010438|P35030-5|PRSS3	REV__nc|ENSG00000010438|P35030-5|PRSS3	MSMS	A375_MHC_IP_R1	1	488.6498718261719	3	488.578365	1462.71327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.557	1	25.557	25.057	26.057	0								0	0	0	0.16269	1	7476	7476		4.7159	1.6437	1		+		23536	16196	17121	17239	23068	23068					0.0004189356623101048
IWERLEQERQH	11	Unmodified	_IWERLEQERQH_					0	0	0			REV__ENSG00000130176|ENST00000252456|CNN1	REV__ENSG00000130176|ENST00000252456|CNN1	MSMS	A375_MHC_IP_R1	1	762.7125854492188	2	762.389313	1522.76407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.02	1	117.02	116.52	117.52	0								0	0	0	0.16164	1	42939	42939		10.151	4.8537	1		+		23537	18522	17122	17240	23069	23069					0.02360235663786625
IWFLKTSII	9	Unmodified	_IWFLKTSII_					0	0	0		ENSG00000213462|ENST00000394323|ERV3-1	ENSG00000213462|ENST00000394323|ERV3-1	ENSG00000213462|ENST00000394323|ERV3-1	MULTI-SECPEP	A375_MHC_IP_R1	1	560.1812133789062	2	560.841885	1119.66922	-0.64662	-0.00036265	2.144	0.0012024	1.4974	0.00083978	560.8436487796977	84.179	0.20092	84.179	84.091	84.292	0					5	3	2	0	0	0	0.77244	1	30803	30803		0.6015	0	1	1093300			23538	9566	17123	17241	23070	23070					0.11416953930597629
IWFQPYYSYSI	11	Unmodified	_IWFQPYYSYSI_					0	0	0			REV__ENSG00000106034|ENST00000310396|CPED1	REV__ENSG00000106034|ENST00000310396|CPED1	MSMS	A375_MHC_IP_R2	2	489.6421203613281	3	489.571211	1465.6918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.217	1	55.968	55.468	56.468	0.75075								0	0	0	0.16179	1	20854	20854		4.7159	2.0847	1		+		23539	17427	17124	17242	23071	23071					-0.022414914624732774
IWIKKFLRRW	10	Unmodified	_IWIKKFLRRW_					0	0	0			REV__ENST00000541657.5_3_12:122240596-122240792:-|nuORF	REV__ENST00000541657.5_3_12:122240596-122240792:-|nuORF	MSMS	A375_MHC_IP_R2	2	482.6872253417969	3	482.634591	1444.88194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.03	1	142.06	141.56	142.56	0.030731								0	0	0	0.15637	1	55533	55533		0.15932	0	1		+		23540	25915	17125	17243	23072	23072					0.17729884781033434
IWILILIILIT	11	Unmodified	_IWILILIILIT_					0	0	0			REV__ENST00000367942.3_1_1:161748048-161751741:+|nuORF	REV__ENST00000367942.3_1_1:161748048-161751741:+|nuORF	MSMS	A375_MHC_IP_R2	2	441.97320556640625	3	441.971987	1322.89413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.334	1	23.965	23.465	24.465	0.63014								0	0	0	0.16351	1	7487	7487		0.45452	0.31463	1		+		23541	23983	17126	17244	23073	23073					0.24560063680905841
IWKKLKLLLY	10	Unmodified	_IWKKLKLLLY_					0	0	0			REV__nc|ENSG00000137672|Q9Y210-2|TRPC6	REV__nc|ENSG00000137672|Q9Y210-2|TRPC6	MSMS	A375_MHC_IP_R1	1	659.3579711914062	2	659.436484	1316.85842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.01	1	106.01	105.51	106.51	0								0	0	0	0.15585	1	38916	38916		1.8442	0.36234	1		+		23542	19024	17127	17245	23074	23074					0.21266026223884182
IWKLDSKIH	9	Unmodified	_IWKLDSKIH_					0	0	0		ENSG00000103671|ENST00000261884|TRIP4;ENST00000559777.1_1_15:64736888-64747260:+|nuORF	ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	MULTI-MSMS	A375_MHC_IP_R1	1	380.9577331542969	3	380.557236	1138.64988	0.40366	0.00015361	0.7061	0.00026871	1.1098	0.00042232	380.5574224533299	82.977	0.50359	82.977	82.722	83.226	0					22	9	3	0	0	0	0.73415	1	30360	30360		2.2828	0.19677	1	1902100			23543	2465	17128	17246	23075	23075					0.08609997639655376
IWKTYKTIRTY	11	Unmodified	_IWKTYKTIRTY_					0	0	0			REV__nc|ENSG00000188086|Q7RTY3-2|PRSS45P	REV__nc|ENSG00000188086|Q7RTY3-2|PRSS45P	MULTI-MSMS	A375_MHC_IP_R1	1	491.6900634765625	3	491.613522	1471.81874	-0.22385	-0.00011005	-0.13416	-6.5957E-05	-0.35802	-0.00017601	491.61345049643563	79.242	0.76723	79.242	79.011	79.778	0					51	14	5	0	0	0	0.73502	1	29003	29003		4.1166	1.2733	1	28984000	+		23544	27428	17129	17247	23076	23076					0.1016985448250125
IWKTYKTIRTY	11	Unmodified	_IWKTYKTIRTY_					0	0	0			REV__nc|ENSG00000188086|Q7RTY3-2|PRSS45P	REV__nc|ENSG00000188086|Q7RTY3-2|PRSS45P	MULTI-MSMS	A375_MHC_IP_R2	2	737.3157348632812	2	736.916644	1471.81874	-0.79029	-0.00058238	-0.2888	-0.00021282	-1.0791	-0.0007952	737.417840203393	78.387	0.50864	79.131	78.778	79.287	0.74473					18	9	3	0	0	0	0.73239	1	29744	29744		4.897	0	1	3433900	+		23545	27428	17129	17247	23077	23077					0.1016985448250125
IWLLRHEWWRW	11	Unmodified	_IWLLRHEWWRW_					0	0	0			REV__ENST00000564785.5_1_15:75650962-75651301:-|nuORF	REV__ENST00000564785.5_1_15:75650962-75651301:-|nuORF	MSMS	A375_MHC_IP_R2	2	561.1801147460938	3	560.968522	1679.88374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.022	1	86.755	86.255	87.255	0.733								0	0	0	0.16358	1	32713	32713		0.094841	0.094841	1		+		23546	26205	17130	17248	23078	23078					0.07098893799002326
IWNFTNRYKWT	11	Unmodified	_IWNFTNRYKWT_					0	0	0			REV__ENST00000306467.9_1_5:122726969-122727023:-|nuORF	REV__ENST00000306467.9_1_5:122726969-122727023:-|nuORF	MSMS	A375_MHC_IP_R2	2	764.8541259765625	2	764.888418	1527.76228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.64	1	115.33	114.83	115.83	0.68999								0	0	0	0.16265	1	43211	43211		4.897	1.6157	1		+		23547	23471	17131	17249	23079	23079					0.01951226645837778
IWPLDQVLL	9	Unmodified	_IWPLDQVLL_					0	0	0		ENST00000401050.7_1_1:53133125-53134458:+|nuORF	ENST00000401050.7_1_1:53133125-53134458:+|nuORF	ENST00000401050.7_1_1:53133125-53134458:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	549.2230224609375	2	548.823692	1095.63283	-0.70229	-0.00038543	-0.20754	-0.0001139	-0.90983	-0.00049934	548.8234394713907	133.66	0.15247	133.83	133.75	133.91	0.16487					4	2	2	0	0	0	0.59614	1	52610	52610		37.974	6.7057	1	3004200			23548	11557	17132	17250	23080	23080					0.0888407703384928
IWPLDQVLL	9	Unmodified	_IWPLDQVLL_					0	0	0		ENST00000401050.7_1_1:53133125-53134458:+|nuORF	ENST00000401050.7_1_1:53133125-53134458:+|nuORF	ENST00000401050.7_1_1:53133125-53134458:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	548.823692	1095.63283	-0.80341	-0.00044093	0.49602	0.00027223	-0.30739	-0.0001687	548.823830764955	133.84	0.20119	133.84	133.71	133.91	0	0.0040281	0.00041458	NaN	37.974	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2713500			23549	11557	17132	17250							0.0888407703384928
IWQRIFEWWYF	11	Unmodified	_IWQRIFEWWYF_					0	0	0		ENST00000470683.1_1_1:113153424-113161548:-|nuORF;ENST00000477332.5_1_1:113149890-113161548:-|nuORF;ENST00000480988.5_1_1:113119662-113161548:-|nuORF;ENST00000497457.5_1_1:113121036-113161548:-|nuORF	ENST00000470683.1_1_1:113153424-113161548:-|nuORF	ENST00000470683.1_1_1:113153424-113161548:-|nuORF	MSMS	A375_MHC_IP_R1	1	558.5355224609375	3	558.613633	1672.81907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.21	1	91.21	90.71	91.71	0								0	0	0	0.16331	1	33515	33515		0.50596	0.41111	1				23550	12342	17133	17251	23081	23081					0.009572742023692626
IWRRRRKMRRR	11	Unmodified	_IWRRRRKMRRR_					0	0	0			REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	MSMS	A375_MHC_IP_R1	1	835.5135498046875	2	835.51586	1669.01717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106	1	106	105.5	106.5	0								0	0	0	0.1636	1	38914	38914		0	0	1		+		23551	23161	17134	17252	23082	23082					0.20941854423722361
IWSHDVMAQ	9	Unmodified	_IWSHDVMAQ_					0	0	0		nc|ENSG00000159842|Q12979-3|ABR;ENST00000572585.5_1_17:909322-915797:-|nuORF;nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR	nc|ENSG00000159842|Q12979-3|ABR	nc|ENSG00000159842|Q12979-3|ABR	MULTI-MSMS	A375_MHC_IP_R1	1	544.7080688476562	2	543.755484	1085.49641	-0.52305	-0.00028441	-0.48831	-0.00026552	-1.0114	-0.00054993	543.75549291935	50.992	3.0462	50.992	50.254	53.301	0					102	59	3	0	0	0	0.46038	1	17842	17842		21.747	2.4897	1	5130600			23552	6389	17135	17253	23083	23083					-0.04291360468300809
IWVDGERFL	9	Unmodified	_IWVDGERFL_					0	0	0			REV__nc|ENSG00000034152|P46734-2|MAP2K3	REV__nc|ENSG00000034152|P46734-2|MAP2K3	MSMS	A375_MHC_IP_R2	2	567.73095703125	2	567.800749	1133.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.51	1	126.81	126.31	127.31	0.2951								0	0	0	0.15486	1	49497	49497		4.756	0	1		+		23553	16310	17136	17254	23084	23084					0.02549431851616646
IWVKSSLLHH	10	Unmodified	_IWVKSSLLHH_					0	0	0			REV__ENSG00000011083|ENST00000230671|SLC6A7	REV__ENSG00000011083|ENST00000230671|SLC6A7	MULTI-SECPEP	A375_MHC_IP_R2	2	406.62738037109375	3	407.236385	1218.68733	-0.2013	-8.1977E-05	0.23557	9.5935E-05	0.034274	1.3957E-05	407.2365243145225	34.534	0.45827	35.287	35.006	35.464	0.75225					13	8	2	0	0	0	0.93194	1	12498	12498		0.50596	0	1	2944500	+		23554	16202	17137	17255	23085	23085					0.0867308890528875
IYAYYINLM	9	Unmodified	_IYAYYINLM_					0	0	0			REV__nc|ENSG00000182366|P0C7U9|FAM87A	REV__nc|ENSG00000182366|P0C7U9|FAM87A	MULTI-SECPEP	A375_MHC_IP_R2	2	1163.07666015625	1	1163.58054	1162.57327	0.14306	0.00016646	-2.5024	-0.0029118	-2.3594	-0.0027453	1164.5805986820665	122.07	0.45516	122.51	122.18	122.63	0.44011					11	8	2	0	0	0	0.77834	1	46680	46680		8.5933	4.264	1	11643000	+		23555	27395	17138	17256	23086	23086					-0.00151561971870251
IYCYDLIQ	8	Unmodified	_IYCYDLIQ_					0	0	0		ENSG00000173226|ENST00000310864|IQCB1;nc|ENSG00000173226|Q15051-2|IQCB1;nc|ENSG00000173226|Q15051-3|IQCB1	ENSG00000173226|ENST00000310864|IQCB1	ENSG00000173226|ENST00000310864|IQCB1	MSMS	A375_MHC_IP_R1	1	515.705810546875	2	515.749336	1029.48412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.123	1	49.123	48.623	49.623	0								0	0	0	0.16876	1	17362	17362		26.341	8.1949	1				23556	7779	17139	17257	23087	23087					-0.029443969313661
IYCYWQNN	8	Unmodified	_IYCYWQNN_					0	0	0			REV__nc|ENSG00000085224|P46100-2|ATRX	REV__nc|ENSG00000085224|P46100-2|ATRX	MULTI-SECPEP	A375_MHC_IP_R2	2	1103.8045654296875	1	1103.46149	1102.45422	0.23927	0.00026402	1.7194	0.0018973	1.9587	0.0021613	1103.4645162423024	117.2	0.45785	117.86	117.53	117.99	0.65962					12	8	2	0	0	0	0.972	1	44239	44239		9.3474	0.75416	1	15779000	+		23557	16830	17140	17258	23088	23088					-0.09291335876696394
IYDAMAPLK	9	Unmodified	_IYDAMAPLK_					0	0	0			REV__nc|ENSG00000150347|Q14865-2|ARID5B	REV__nc|ENSG00000150347|Q14865-2|ARID5B	MSMS	A375_MHC_IP_R1	1	511.1787414550781	2	511.272978	1020.5314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.88	1	63.88	63.38	64.38	0								0	0	0	0.15142	1	23104	23104		19.257	5.7491	1		+		23558	19710	17141	17259	23089	23089					0.021958823396289517
IYDIDEFYY	9	Unmodified	_IYDIDEFYY_					0	0	0			REV__tr|U7SPD1|U7SPD1_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01823PE=3SV=1	REV__tr|U7SPD1|U7SPD1_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01823PE=3SV=1	MSMS	A375_MHC_IP_R2	2	620.5971069335938	2	620.774062	1239.53357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.512	1	86.248	85.748	86.748	0.73601								0	0	0	0.1521	1	32509	32509		18.135	4.2289	1		+		23559	28357	17142	17260	23090	23090					-0.07661410441551197
IYDWRSAW	8	Unmodified	_IYDWRSAW_					0	0	0			REV__ENSG00000125304|ENST00000376387|TM9SF2	REV__ENSG00000125304|ENST00000376387|TM9SF2	MULTI-MSMS	A375_MHC_IP_R2	2	548.5449829101562	2	548.764166	1095.51378	-0.81667	-0.00044816	3.9043	0.0021425	3.0876	0.0016944	548.7678892982458	106.27	0.20354	107.03	106.94	107.14	0.75977					5	3	2	0	0	0	0.77554	1	40175	40175		11.114	0.93107	1	495110	+		23560	18333	17143	17261	23091	23091					-0.030156968710116416
IYEMSSVSM	9	Unmodified	_IYEMSSVSM_					0	0	0			REV__nc|ENSG00000023734|Q9Y3F4-2|STRAP	REV__nc|ENSG00000023734|Q9Y3F4-2|STRAP	MULTI-MSMS	A375_MHC_IP_R2	2	524.1486206054688	2	523.730286	1045.44602	-0.60285	-0.00031573	0.47672	0.00024967	-0.12613	-6.6059E-05	523.7304078858298	32.706	0.40582	33.443	33.265	33.671	0.73692					13	7	2	0	0	0	0.46038	1	11655	11655		21.747	0	1	3058900	+		23561	16282	17144	17262	23092	23092					-0.0748865090831714
IYENLKEDL	9	Unmodified	_IYENLKEDL_					0	0	0			REV__tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	REV__tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	568.2162475585938	2	568.795329	1135.5761	-0.28259	-0.00016074	0.06626	3.7688E-05	-0.21633	-0.00012305	568.7954525148007	88.326	0.65849	89.058	88.621	89.279	0.7318					19	12	2	0	0	0	0.73363	1	33548	33548		3.5965	0.31518	1	1844700	+		23562	28685	17145	17263	23093	23093					0.01373984686665608
IYFAEMDPD	9	Unmodified	_IYFAEMDPD_					0	0	0		ENSG00000159459|ENST00000290650|UBR1;UBR1|p.Q713Rfs*20|1|0.03|ENSG00000159459|chr15:43036232-43036232|A/-|frameshift_variant;nc|ENSG00000159459|Q8IWV7-2|UBR1	ENSG00000159459|ENST00000290650|UBR1	ENSG00000159459|ENST00000290650|UBR1	MULTI-SECPEP	A375_MHC_IP_R1	1	1101.12646484375	1	1100.46049	1099.45321	-0.50671	-0.00055762	-2.7327	-0.0030073	-3.2394	-0.0035649	1101.4597546480325	123.77	0.55686	123.77	123.44	123.99	0					13	10	2	0	0	0	0.74651	1	46159	46159		8.5933	4.6489	1	70426000			23563	6373	17146	17264	23094	23094					-0.09253595036261686
IYFLLFKQ	8	Unmodified	_IYFLLFKQ_					0	0	0		ENST00000481570.5_1_7:94059528-94059702:+|nuORF	ENST00000481570.5_1_7:94059528-94059702:+|nuORF	ENST00000481570.5_1_7:94059528-94059702:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	536.7130737304688	2	536.315503	1070.61645	-1.314	-0.00070472	-0.61072	-0.00032754	-1.9247	-0.0010323	536.8154068197465	52.407	0.70767	53.159	53.032	53.74	0.75225					28	13	3	0	0	0	0.97144	1	19812	19812		14.582	2.0501	1	3637100			23564	12515	17147	17265	23095	23095					0.08396995867747137
IYFSDDTVYY	10	Unmodified	_IYFSDDTVYY_					0	0	0		tr|U7SMX9|U7SMX9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01741PE=4SV=1	tr|U7SMX9|U7SMX9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01741PE=4SV=1	tr|U7SMX9|U7SMX9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01741PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	643.17822265625	2	643.284794	1284.55504	-0.59931	-0.00038553	-2.8335	-0.0018228	-3.4328	-0.0022083	643.7838853565139	68.561	0.4065	68.561	68.412	68.819	0					9	7	2	0	0	0	0.7098	1	24940	24940		7.9102	2.1783	1	881090			23565	29541	17148	17266	23096	23096					-0.075860254128429
IYGDETTVEY	10	Unmodified	_IYGDETTVEY_					0	0	0			REV__ENSG00000204020|ENST00000404459|LIPN	REV__ENSG00000204020|ENST00000404459|LIPN	MULTI-SECPEP	A375_MHC_IP_R2	2	595.6661987304688	2	595.266601	1188.51865	-0.87374	-0.00052011	-0.017403	-1.036E-05	-0.89114	-0.00053047	595.266523913065	61.088	0.5033	61.833	61.618	62.121	0.74503					16	9	2	0	0	0	0.9269	1	23184	23184		10.824	10.824	1	2578000	+		23566	22483	17149	17267	23097	23097					-0.06806902309563156
IYGDETTVEY	10	Unmodified	_IYGDETTVEY_					0	0	0			REV__ENSG00000204020|ENST00000404459|LIPN	REV__ENSG00000204020|ENST00000404459|LIPN	MULTI-MATCH	A375_MHC_IP_R1	1		2	595.266601	1188.51865	-0.37997	-0.00022618	-0.020518	-1.2213E-05	-0.40049	-0.0002384	595.2666222055735	61.678	0.56247	61.678	61.483	62.046	0	-0.077641	-1.9543E-06	NaN	15.847	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2387300	+		23567	22483	17149	17267							-0.06806902309563156
IYGEDERFM	9	Unmodified	_IYGEDERFM_					0	0	0			REV__nc|ENSG00000177301|P16389-2|KCNA2	REV__nc|ENSG00000177301|P16389-2|KCNA2	MULTI-SECPEP	A375_MHC_IP_R2	2	579.689697265625	2	580.258056	1158.50156	-0.15834	-9.1879E-05	0.29154	0.00016917	0.1332	7.7288E-05	580.7608020765896	109.85	0.25621	110.59	110.48	110.74	0.74683					6	4	2	0	0	0	0.75466	1	41418	41418		7.9102	3.9658	1	554670	+		23568	21451	17150	17268	23098	23098					-0.07135101396374921
IYGGRVYLN	9	Unmodified	_IYGGRVYLN_					0	0	0			REV__MGAM|p.H1710Y|2|0.33|ENSG00000257335|chr7:142099679-142099679|C/T|missense_variant	REV__MGAM|p.H1710Y|2|0.33|ENSG00000257335|chr7:142099679-142099679|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	528.1871337890625	2	527.787641	1053.56073	-0.45095	-0.000238	0.41542	0.00021925	-0.035523	-1.8749E-05	527.787549494617	51.203	1.4766	51.203	49.947	51.424	0					35	28	2	0	0	0	0.3243	1	18189	18189		36.044	3.7387	1	2614800	+		23569	27015	17151	17269	23099	23099					0.03609162680140798
IYGGSTLELP	10	Unmodified	_IYGGSTLELP_					0	0	0			REV__tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	REV__tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	MSMS	A375_MHC_IP_R2	2	525.1887817382812	2	525.279315	1048.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.97	1	133.13	132.63	133.63	0.16487								0	0	0	0.15283	1	52311	52311		11.64	0.81637	1		+		23570	28254	17152	17270	23100	23100					0.02174617003538515
IYGLNLASL	9	Unmodified	_IYGLNLASL_					0	0	0		tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1	tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1	tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1	MSMS	A375_MHC_IP_R1	1	482.6265563964844	2	482.279118	962.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.35	1	90.35	89.85	90.85	0								0	0	0	0.13141	1	33203	33203		32.305	6.9062	1				23571	29484	17153	17271	23101	23101					0.060912420743079565
IYGNRLTV	8	Unmodified	_IYGNRLTV_					0	0	0			REV__tr|U7SSW9|U7SSW9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01529PE=4SV=1	REV__tr|U7SSW9|U7SSW9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01529PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	468.17108154296875	2	468.269084	934.523616	-0.65691	-0.00030761	0.81476	0.00038153	0.15785	7.3918E-05	468.2697125191663	67.149	0.55782	67.885	67.597	68.155	0.73631					22	10	3	0	0	0	0.77651	1	25410	25410		34.102	1.797	1	2458800	+		23572	28449	17154	17272	23102	23102					0.05373491134366759
IYGRMWYF	8	Unmodified	_IYGRMWYF_					0	0	0		nc|ENSG00000185973|Q9NVH6-7|TMLHE;nc|ENSG00000185973|Q9NVH6-6|TMLHE;nc|ENSG00000185973|Q9NVH6-5|TMLHE;ENSG00000185973|ENST00000334398|TMLHE;nc|ENSG00000185973|Q9NVH6-8|TMLHE;nc|ENSG00000185973|Q9NVH6-4|TMLHE;nc|ENSG00000185973|Q9NVH6-2|TMLHE;nc|ENSG00000185973|Q9NVH6-3|TMLHE	nc|ENSG00000185973|Q9NVH6-7|TMLHE	nc|ENSG00000185973|Q9NVH6-7|TMLHE	MULTI-SECPEP	A375_MHC_IP_R1	1	568.1585693359375	2	568.273312	1134.53207	-0.3769	-0.00021418	-0.3328	-0.00018912	-0.7097	-0.0004033	568.2733994891021	59.057	1.2205	59.057	58.481	59.701	0					27	23	2	0	0	0	0.85124	1	21290	21290		34.187	20.281	1	1112300			23573	8713	17155	17273	23103	23103					-0.029812782206590782
IYGTINTKE	9	Unmodified	_IYGTINTKE_					0	0	0		ENSG00000134253|ENST00000256649|TRIM45	ENSG00000134253|ENST00000256649|TRIM45	ENSG00000134253|ENST00000256649|TRIM45	MULTI-SECPEP	A375_MHC_IP_R2	2	519.6577758789062	2	519.776939	1037.53933	-0.80965	-0.00042084	0.96295	0.00050052	0.1533	7.9683E-05	519.7773504253854	33.107	0.61125	33.859	33.483	34.095	0.75225					28	11	3	0	0	0	0.71541	1	11855	11855		11.64	1.5664	1	6801500			23574	4560	17156	17274	23104	23104					0.022057328607616
IYHDYHQYF	9	Unmodified	_IYHDYHQYF_					0	0	0		PIKFYVE|p.H1364Y|1|0.24|ENSG00000115020|chr2:208333441-208333441|C/T|missense_variant	PIKFYVE|p.H1364Y|1|0.24|ENSG00000115020|chr2:208333441-208333441|C/T|missense_variant	PIKFYVE|p.H1364Y|1|0.24|ENSG00000115020|chr2:208333441-208333441|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	643.0870971679688	2	643.285463	1284.55637	-0.59931	-0.00038553	-3.873	-0.0024915	-4.4723	-0.002877	643.7838853565139	68.561	0.4065	68.561	68.412	68.819	0					9	7	2	0	0	0	0.68216	1	24835	24835		8.5933	0.68312	1	881090			23575	15179	17157	17275	23105	23105					-0.07452346533455056
IYHTRLTI	8	Unmodified	_IYHTRLTI_					0	0	0			REV__nc|ENSG00000135048|Q9UHN6-2|CEMIP2	REV__nc|ENSG00000135048|Q9UHN6-2|CEMIP2	MSMS	A375_MHC_IP_R1	1	509.1956481933594	2	508.798009	1015.58147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.42	1	123.42	122.92	123.92	0								0	0	0	0.16876	1	46117	46117		20.454	2.3186	1		+		23576	27237	17158	17276	23106	23106					0.07429753059784616
IYIHIYIY	8	Unmodified	_IYIHIYIY_					0	0	0		ENST00000342756.9_1_4:57368535-57368814:+|nuORF	REV__ENST00000501122.2_1_11:65204545-65204752:+|nuORF	REV__ENST00000501122.2_1_11:65204545-65204752:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	548.5848388671875	2	549.305136	1096.59572	-0.67071	-0.00036843	-2.6515	-0.0014565	-3.3222	-0.0018249	549.3031779122781	68.208	0.50784	68.943	68.714	69.221	0.73511					17	9	3	0	0	0	0.90851	1	25846	25846		17.087	0	1	2294700			23577	10881	17159	17277	23107	23107					0.051284054880852636
IYIVFRRRR	9	Unmodified	_IYIVFRRRR_					0	0	0		DRD2|p.L216F|1|0.33|ENSG00000149295|chr11:113415498-113415498|G/A|missense_variant	DRD2|p.L216F|1|0.33|ENSG00000149295|chr11:113415498-113415498|G/A|missense_variant	DRD2|p.L216F|1|0.33|ENSG00000149295|chr11:113415498-113415498|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	640.2630004882812	2	639.898923	1277.78329	-0.65115	-0.00041667	-2.9342	-0.0018776	-3.5853	-0.0022942	640.4001995848357	91.06	0.20164	91.794	91.666	91.868	0.7345					5	3	2	0	0	0	0.74651	1	34611	34611		8.5933	0	1	1628100			23578	800	17160	17278	23108	23108					0.15551281536022543
IYIYRYLYIH	10	Unmodified	_IYIYRYLYIH_					0	0	0		ENST00000527636.5_3_11:12958765-12958912:+|nuORF	ENST00000527636.5_3_11:12958765-12958912:+|nuORF	ENST00000527636.5_3_11:12958765-12958912:+|nuORF	MSMS	A375_MHC_IP_R1	1	708.9534912109375	2	708.887355	1415.76016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.009	1	67.009	66.509	67.509	0								0	0	0	0.15417	1	24278	24278		7.2892	1.0834	1				23579	13105	17161	17279	23109	23109					0.06890797908044988
IYKDFVFDI	9	Unmodified	_IYKDFVFDI_					0	0	0			REV__tr|U7SYC0|U7SYC0_FUSNUIsochorismatase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00962PE=4SV=1	REV__tr|U7SYC0|U7SYC0_FUSNUIsochorismatase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00962PE=4SV=1	MSMS	A375_MHC_IP_R2	2	387.2728576660156	3	387.20598	1158.59611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.89	1	37.661	37.161	38.161	0.7709								0	0	0	0.15486	1	13472	13472		5.2969	0	1		+		23580	28627	17162	17280	23110	23110					0.023157804172797114
IYKKAPSP	8	Unmodified	_IYKKAPSP_					0	0	0		ENST00000569152.1_1_15:75942404-75949317:+|nuORF	ENST00000569152.1_1_15:75942404-75949317:+|nuORF	ENST00000569152.1_1_15:75942404-75949317:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	902.7361450195312	1	903.52983	902.522553	-0.70968	-0.00064122	-0.85381	-0.00077144	-1.5635	-0.0014127	903.5297536052459	122.77	2.3707	122.77	121.92	124.29	0					76	46	2	0	0	0	0.972	1	46650	46650		8.5933	4.264	1	1667499999.9999998			23581	13589	17163	17281	23111	23111					0.06739276765472368
IYKKGVKKK	9	Unmodified	_IYKKGVKKK_					0	0	0			REV__ENSG00000155307|ENST00000400566|SAMSN1	REV__ENSG00000155307|ENST00000400566|SAMSN1	MULTI-MSMS	A375_MHC_IP_R2	2	1091.7642822265625	1	1091.72993	1090.72265	0.2787	0.00030427	-2.4831	-0.0027109	-2.2044	-0.0024066	1091.7304102990881	137.13	0.81808	137.24	136.97	137.79	0.11133					17	15	2	0	0	0	0.75251	1	54003	54003		2.3027	1.778	1	1693200	+		23582	19921	17164	17282	23112	23112					0.18091751433075842
IYKKGVKKK	9	Unmodified	_IYKKGVKKK_					0	0	0			REV__ENSG00000155307|ENST00000400566|SAMSN1	REV__ENSG00000155307|ENST00000400566|SAMSN1	MULTI-SECPEP	A375_MHC_IP_R2	2	1091.9498291015625	1	1091.72993	1090.72265	0.2787	0.00030427	-2.4831	-0.0027109	-2.2044	-0.0024066	1091.7304102990881	137.13	0.81808	137.24	136.97	137.79	0.11133					17	15	2	0	0	0	0.8175	1	53977	53977		0.6015	0.076735	1	1693200	+		23583	19921	17164	17282	23113	23113					0.18091751433075842
IYKPVPRSS	9	Unmodified	_IYKPVPRSS_					0	0	0		ENSG00000187601|ENST00000342972|MAGEH1	ENSG00000187601|ENST00000342972|MAGEH1	ENSG00000187601|ENST00000342972|MAGEH1	MSMS	A375_MHC_IP_R2	2	523.7030639648438	2	523.803291	1045.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.39	1	120.92	120.42	121.42	0.5321								0	0	0	0.15486	1	45937	45937		7.9102	0.62092	1				23584	8839	17165	17283	23114	23114					0.07105735714230832
IYKPYNARRTS	11	Unmodified	_IYKPYNARRTS_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|69|3|sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|69|3|sense	MSMS	A375_MHC_IP_R2	2	684.9569702148438	2	684.872768	1367.73098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.333	1	81.078	80.578	81.578	0.74474								0	0	0	0.16258	1	30496	30496		5.2969	2.0156	1		+		23585	26897	17166	17284	23115	23115					0.061826536117450814
IYKRDTDCDSF	11	Unmodified	_IYKRDTDCDSF_					0	0	0		ENST00000182527.3_1_6:52363513-52363666:-|nuORF	ENST00000182527.3_1_6:52363513-52363666:-|nuORF	ENST00000182527.3_1_6:52363513-52363666:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	454.1556091308594	3	454.871332	1361.59217	-0.42396	-0.00019285	-2.1206	-0.0009646	-2.5446	-0.0011574	454.8701957751703	37.683	0.30572	38.457	38.33	38.636	0.77451					7	5	2	0	0	0	0.99847	1	13810	13810		5.0475	0.3316	1	1501900			23586	10074	17167	17285	23116	23116					-0.07416677138758132
IYKRQRKMKQR	11	Unmodified	_IYKRQRKMKQR_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	MULTI-SECPEP	A375_MHC_IP_R1	1	768.1561279296875	2	767.959186	1533.90382	-0.69393	-0.00053291	-0.93527	-0.00071825	-1.6292	-0.0012512	768.4610133076156	129.98	0.25255	129.98	129.85	130.11	0					5	4	2	0	0	0	1.0014	1	49961	49961		0	0	1	1819400			23587	3154	17168	17286	23117	23117					0.15822321467317124
IYKRYEALQKL	11	Unmodified	_IYKRYEALQKL_					0	0	0			REV__ENSG00000164292|ENST00000379982|RHOBTB3	REV__ENSG00000164292|ENST00000379982|RHOBTB3	MSMS	A375_MHC_IP_R1	1	475.66033935546875	3	475.613522	1423.81874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.424	1	52.424	51.924	52.924	0								0	0	0	0.16309	1	18643	18643		2.6312	0	1		+		23588	20474	17169	17287	23118	23118					0.12377854482497241
IYLSPMEQLN	10	Unmodified	_IYLSPMEQLN_					0	0	0			REV__tr|U7T148|U7T148_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00895PE=3SV=1	REV__tr|U7T148|U7T148_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00895PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	1207.969482421875	1	1207.60274	1206.59546	0.28682	0.00034637	0.7496	0.00090522	1.0364	0.0012516	1207.6045110378213	118.74	0.4547	119.35	118.95	119.4	0.60909					12	8	2	0	0	0	0.93799	1	45010	45010		6.7232	1.4925	1	36099000	+		23589	28694	17170	17288	23119	23119					0.00042617705935299455
IYLVHINHL	9	Unmodified	_IYLVHINHL_					0	0	0		tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	374.5860290527344	3	374.553715	1120.63931	0.17929	6.7153E-05	-0.84814	-0.00031767	-0.66885	-0.00025052	374.55350277055453	36.072	0.91649	36.838	36.438	37.354	0.76615					29	17	2	0	0	0	0.68216	1	13063	13063		5.2969	0.39987	1	3510200			23590	29448	17171	17289	23120	23120					0.08382014985227215
IYLVLLLLGPP	11	Unmodified	_IYLVLLLLGPP_					0	0	0		nc|ENSG00000174233|O43306-2|ADCY6;ENSG00000174233|ENST00000357869|ADCY6;ENST00000548351.1_1_12:49166100-49167800:-|nuORF;ENST00000552099.5_1_12:49165333-49167571:-|nuORF;ENST00000547260.5_1_12:49165333-49167887:-|nuORF	nc|ENSG00000174233|O43306-2|ADCY6	nc|ENSG00000174233|O43306-2|ADCY6	MSMS	A375_MHC_IP_R2	2	404.2882995605469	3	404.265171	1209.77368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.236	1	56.986	56.486	57.486	0.75015								0	0	0	0.16301	1	21252	21252		3.0723	0.81953	1				23591	7865	17172	17290	23121	23121					0.17718655687303908
IYLWKRLCL	9	Unmodified	_IYLWKRLCL_					0	0	0			REV__ENSG00000170881|ENST00000303545|RNF139	REV__ENSG00000170881|ENST00000303545|RNF139	MULTI-MSMS	A375_MHC_IP_R2	2	1208.40576171875	1	1207.702	1206.69472	0.20587	0.00024863	-0.019643	-2.3723E-05	0.18623	0.00022491	1207.701144795467	123.23	0.5069	123.61	123.23	123.73	0.3766					10	9	2	0	0	0	0.71977	1	47355	47355		5.2307	0	1	20714000	+		23592	21028	17173	17291	23122	23122					0.09964105181370542
IYMVLFLLFY	10	Unmodified	_IYMVLFLLFY_					0	0	0			REV__tr|U7T022|U7T022_FUSNUPrepilintypeIVendopeptidasepeptidasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00779PE=3SV=1	REV__tr|U7T022|U7T022_FUSNUPrepilintypeIVendopeptidasepeptidasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00779PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	661.7667236328125	2	661.366878	1320.7192	-0.70098	-0.00046361	0.6209	0.00041064	-0.080089	-5.2968E-05	661.3673138476065	95.43	0.40816	96.18	95.99	96.398	0.75044					17	7	3	0	0	0	0.78079	1	36267	36267		24.674	5.9527	1	3066300	+		23593	28665	17174	17292	23123	23123					0.07167320544203903
IYMVQDIV	8	Unmodified	_IYMVQDIV_					0	0	0		ENST00000456504.5_1_15:94858078-95022260:+|nuORF;nc|ENSG00000140563|Q6DN12-2|MCTP2;ENSG00000140563|ENST00000357742|MCTP2;nc|ENSG00000140563|Q6DN12-3|MCTP2;MCTP2|p.R760K|1|0.35|ENSG00000140563|chr15:94458165-94458165|G/A|missense_variant;MCTP2|p.E759K|1|0.53|ENSG00000140563|chr15:94458161-94458161|G/A|missense_variant	ENST00000456504.5_1_15:94858078-95022260:+|nuORF	ENST00000456504.5_1_15:94858078-95022260:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	979.7235107421875	1	980.512131	979.504854	0.18449	0.0001809	-0.0044202	-4.3341E-06	0.18007	0.00017656	980.5122119407224	138.21	0.30423	138.29	138.11	138.42	0.083969					9	5	2	0	0	0	0.972	1	54240	54240		5.2307	0.47466	1	3985500			23594	5170	17175	17293	23124	23124					0.01428193448316506
IYNEIAGK	8	Unmodified	_IYNEIAGK_					0	0	0		ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-MSMS	A375_MHC_IP_R1	1	454.647705078125	2	454.247818	906.481082	-0.369	-0.00016762	0.036456	1.656E-05	-0.33255	-0.00015106	454.24778196736617	28.163	0.40295	28.163	27.987	28.39	0					12	7	2	0	0	0	0.19008	1	8661	8661		68.081	13.307	1	2806400			23595	1420	17176	17294	23125	23125					0.02410096006144613
IYNEKFYNK	9	Unmodified	_IYNEKFYNK_					0	0	0			REV__ENST00000379305.7_2_7:102696092-102715217:-|nuORF	REV__ENST00000379305.7_2_7:102696092-102715217:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	407.5925598144531	3	406.876634	1217.60807	-0.51293	-0.0002087	0.80243	0.00032649	0.2895	0.00011779	406.8769454985112	38.34	0.51083	38.34	38.168	38.679	0					21	9	3	0	0	0	0.51106	1	13100	13100		13.615	3.2996	1	4997100	+		23596	20199	17177	17295	23126	23126					0.007973971604542385
IYNGESFEY	9	Unmodified	_IYNGESFEY_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;RNF213|p.F464I|1|0.48|ENSG00000173821|chr17:80291746-80291746|T/A|missense_variant;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000573548.1_1_17:78263625-78265730:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213;ENST00000573548.1_1_17:78263625-78265730:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	A375_MHC_IP_R1	1	561.1702880859375	2	561.242929	1120.47131	-0.54784	-0.00030747	-2.1091	-0.0011837	-2.6569	-0.0014912	561.2423139478914	76.515	0.25188	76.515	76.421	76.673	0					6	4	2	0	0	0	0.55818	1	27869	27869		16.942	5.302	1	866950			23597	7831;13627	17178	17296	23127	23127					-0.08411136789891316
IYNSNIFTDP	10	Unmodified	_IYNSNIFTDP_					0	0	0		ENSG00000111262|ENST00000382545|KCNA1	ENSG00000111262|ENST00000382545|KCNA1	ENSG00000111262|ENST00000382545|KCNA1	MULTI-SECPEP	A375_MHC_IP_R2	2	591.8910522460938	2	592.285128	1182.5557	-0.44438	-0.0002632	0.90188	0.00053417	0.4575	0.00027097	592.2859995883583	84.749	0.65999	85.485	85.222	85.882	0.73601					17	12	2	0	0	0	0.87163	1	32291	32291		13.906	1.6654	1	1417000			23598	2978	17179	17297	23128	23128					-0.028271859731376026
IYNSNIFTDP	10	Unmodified	_IYNSNIFTDP_					0	0	0		ENSG00000111262|ENST00000382545|KCNA1	ENSG00000111262|ENST00000382545|KCNA1	ENSG00000111262|ENST00000382545|KCNA1	MULTI-MATCH	A375_MHC_IP_R1	1		2	592.285128	1182.5557	-0.55274	-0.00032738	1.917	0.0011354	1.3642	0.000808	592.2862305069311	85.766	0.50838	85.766	85.362	85.87	0	0.14026	0.00040623	NaN	13.906	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1518200			23599	2978	17179	17297							-0.028271859731376026
IYPLPHRVV	9	Unmodified	_IYPLPHRVV_					0	0	0			REV__ENSG00000172548|ENST00000311946|NIPAL4	REV__ENSG00000172548|ENST00000311946|NIPAL4	MULTI-MSMS	A375_MHC_IP_R1	1	365.2889404296875	3	365.222076	1092.6444	-0.23491	-8.5793E-05	-0.32992	-0.00012049	-0.56483	-0.00020629	365.2225558374524	29.354	0.40593	29.354	29.047	29.453	0					13	7	3	0	0	0	0.66474	1	9193	9193		10.151	1.1743	1	10696000	+		23600	21155	17180	17298	23129	23129					0.10178318847852097
IYPQIILHT	9	Unmodified	_IYPQIILHT_					0	0	0			REV__chr14:22493990-22547506|211|16.85|0.0|20.68|+|2|TRAJ45,TRAC|1	REV__chr14:22493990-22547506|211|16.85|0.0|20.68|+|2|TRAJ45,TRAC|1	MULTI-SECPEP	A375_MHC_IP_R1	1	1096.94677734375	1	1097.63536	1096.62808	-0.069375	-7.6149E-05	2.6187	0.0028744	2.5494	0.0027983	1097.6391368881475	120.01	0.508	120.01	119.74	120.25	0					15	9	2	0	0	0	0.78798	1	44421	44421		7.2892	0.56607	1	21464000	+		23601	15703	17181	17299	23130	23130					0.0836319289110179
IYPQIILHT	9	Unmodified	_IYPQIILHT_					0	0	0			REV__chr14:22493990-22547506|211|16.85|0.0|20.68|+|2|TRAJ45,TRAC|1	REV__chr14:22493990-22547506|211|16.85|0.0|20.68|+|2|TRAJ45,TRAC|1	MULTI-MATCH	A375_MHC_IP_R2	2		1	1097.63536	1096.62808	0.1623	0.00017814	2.637	0.0028945	2.7993	0.0030726	1098.6406002781964	119.32	0.86495	119.86	119.48	120.34	0.5321	-0.075579	9.0116E-06	NaN	7.2892	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52306000	+		23602	15703	17181	17299							0.0836319289110179
IYPSEKSL	8	Unmodified	_IYPSEKSL_					0	0	0		ENSG00000164187|ENST00000296603|LMBRD2	ENSG00000164187|ENST00000296603|LMBRD2	ENSG00000164187|ENST00000296603|LMBRD2	MULTI-MSMS	A375_MHC_IP_R1	1	469.15545654296875	2	468.755475	935.496398	-0.14135	-6.6258E-05	-0.69944	-0.00032787	-0.84079	-0.00039413	468.75523443688684	37.359	0.5621	37.359	37.148	37.71	0					13	10	2	0	0	0	0.70206	1	12636	12636		34.102	3.8776	1	2595900			23603	6798	17182	17300	23131	23131					0.026069628033383196
IYPSNPPY	8	Unmodified	_IYPSNPPY_					0	0	0			REV__nc|ENSG00000107147|Q5JUK3-4|KCNT1	REV__nc|ENSG00000107147|Q5JUK3-4|KCNT1	MULTI-MSMS	A375_MHC_IP_R2	2	475.6601867675781	2	475.734543	949.454533	-0.8122	-0.00038639	0.056124	2.67E-05	-0.75608	-0.00035969	475.73464642862206	52.001	1.673	52.754	51.663	53.336	0.75225					67	32	3	0	0	0	0.77123	1	19246	19246		14.582	4.3983	1	8866900	+		23604	17475	17183	17301	23132	23132					-0.022215928851892386
IYQADNNAFV	10	Unmodified	_IYQADNNAFV_					0	0	0			REV__ENST00000454175.1_1_7:99103512-99103632:+|nuORF	REV__ENST00000454175.1_1_7:99103512-99103632:+|nuORF	MSMS	A375_MHC_IP_R2	2	577.7161254882812	2	577.77747	1153.54039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.232	1	96.982	96.482	97.482	0.75045								0	0	0	0.15283	1	36541	36541		11.64	0	1		+		23605	24914	17184	17302	23133	23133					-0.030240527703654152
IYQEFVRNHQY	11	Unmodified	_IYQEFVRNHQY_					0	0	0		ENSG00000058335|ENST00000558480|RASGRF1;nc|ENSG00000058335|Q13972|RASGRF1;ENST00000560334.5_1_15:79271198-79356973:-|nuORF;ENST00000502677.1_1_5:80366283-80383248:+|nuORF;ENSG00000113319|ENST00000265080|RASGRF2	ENSG00000058335|ENST00000558480|RASGRF1	ENSG00000058335|ENST00000558480|RASGRF1	MSMS	A375_MHC_IP_R2	2	499.6445617675781	3	499.58088	1495.72081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.334	1	57.084	56.584	57.584	0.75015								0	0	0	0.16249	1	21292	21292		2.6312	0	1				23606	1292	17185	17303	23134	23134					-0.007219541134645624
IYQQIIQIT	9	Unmodified	_IYQQIIQIT_					0	0	0		ENST00000432615.5_1_7:158447451-158457424:-|nuORF	ENST00000432615.5_1_7:158447451-158457424:-|nuORF	ENST00000432615.5_1_7:158447451-158457424:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	560.159912109375	2	560.324057	1118.63356	-0.35488	-0.00019885	1.5788	0.00088462	1.2239	0.00068577	560.3252847691789	93.342	0.81598	93.342	92.922	93.738	0					22	15	2	0	0	0	0.55359	1	34216	34216		21.747	5.8995	1	1541400			23607	11880	17186	17304	23135	23135					0.07898871682914432
IYQSKKQIQ	9	Unmodified	_IYQSKKQIQ_					0	0	0			REV__ENSG00000173166|ENST00000319170|RAPH1	REV__ENSG00000173166|ENST00000319170|RAPH1	MULTI-MSMS	A375_MHC_IP_R2	2	379.6203308105469	3	379.220513	1134.63971	-0.38241	-0.00014502	1.5118	0.00057332	1.1294	0.0004283	379.22067811855925	25.738	0.60976	26.398	26.144	26.754	0.65992					23	11	4	0	0	0	0.6421	1	8661	8661		12.175	1.2758	1	2845400	+		23608	21198	17187	17305	23136	23136					0.07777389914440391
IYRGEELTY	9	Unmodified	_IYRGEELTY_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;ENST00000525408.1_1_11:118390286-118392884:+|nuORF	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-SECPEP	A375_MHC_IP_R2	2	572.190185546875	2	572.287671	1142.56079	-0.65943	-0.00037738	-0.039354	-2.2522E-05	-0.69878	-0.00039991	572.7895094977099	59.103	1.0133	59.85	59.286	60.299	0.74714					23	19	2	0	0	0	0.62767	1	22497	22497		23.148	0	1	3467100			23609	3522	17188	17306	23137	23137					-0.004788821105421448
IYRKVRDL	8	Unmodified	_IYRKVRDL_					0	0	0			REV__nc|ENSG00000197555|O43166-3|SIPA1L1	REV__nc|ENSG00000197555|O43166-3|SIPA1L1	MSMS	A375_MHC_IP_R2	2	354.97161865234375	3	354.885464	1061.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.099	1	33.851	33.351	34.351	0.75225								0	0	0	0.16876	1	11830	11830		4.897	1.6157	1		+		23610	22297	17189	17307	23138	23138					0.10621130842469029
IYRRYIRMYRF	11	Unmodified	_IYRRYIRMYRF_					0	0	0			REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	MULTI-MSMS	A375_MHC_IP_R1	1	410.3782043457031	4	409.977782	1635.88202	-0.27526	-0.00011285	0.81278	0.00033322	0.53752	0.00022037	409.9781512523557	30.846	0.45531	30.846	30.603	31.059	0					21	8	4	0	0	0	0.7359	1	9840	9840		1.3296	1.2463	1	5302800	+		23611	21559	17190	17308	23139	23139					0.0895151671873009
IYRRYIRMYRF	11	Unmodified	_IYRRYIRMYRF_					0	0	0			REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	MULTI-MSMS	A375_MHC_IP_R2	2	410.377685546875	4	409.977782	1635.88202	-0.31099	-0.0001275	0.52823	0.00021656	0.21724	8.9062E-05	409.97797443474326	29.957	0.55881	30.655	30.434	30.993	0.69872					19	10	3	0	0	0	0.7359	1	10495	10495		1.3296	1.2463	1	6001500	+		23612	21559	17190	17308	23140	23140					0.0895151671873009
IYRRYIRMYRF	11	Unmodified	_IYRRYIRMYRF_					0	0	0			REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		4	409.977782	1635.88202	-0.27526	-0.00011285	0.81278	0.00033322	0.53752	0.00022037	409.9781512523557	30.846	0.45531	30.846	30.603	31.059	0	0.09545	0.00023201	NaN	1.3296	21	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5302800	+		23613	21559	17190	17308							0.0895151671873009
IYRRYIRMYRF	11	Unmodified	_IYRRYIRMYRF_					0	0	0			REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		4	409.977782	1635.88202	-0.31099	-0.0001275	0.52823	0.00021656	0.21724	8.9062E-05	409.97797443474326	29.957	0.55881	30.655	30.434	30.993	0.69872	-0.09545	-0.00023463	NaN	1.3296	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6001500	+		23614	21559	17190	17308							0.0895151671873009
IYRSPFAKL	9	Unmodified	_IYRSPFAKL_					0	0	0			REV__nc|ENSG00000121671|Q49AN0-2|CRY2	REV__nc|ENSG00000121671|Q49AN0-2|CRY2	MULTI-MSMS	A375_MHC_IP_R2	2	1094.5716552734375	1	1094.63569	1093.62842	0.17615	0.00019282	0.31423	0.00034396	0.49037	0.00053678	1094.6369763044215	118.85	1.4208	119.46	118.69	120.11	0.60909					42	27	2	0	0	0	0.7235	1	44851	44851		7.9102	5.6074	1	82725000	+		23615	18167	17191	17309	23141	23141					0.08534612610947079
IYRSPFAKL	9	Unmodified	_IYRSPFAKL_					0	0	0			REV__nc|ENSG00000121671|Q49AN0-2|CRY2	REV__nc|ENSG00000121671|Q49AN0-2|CRY2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	1094.63569	1093.62842	0.17615	0.00019282	0.31423	0.00034396	0.49037	0.00053678	1094.6369763044215	118.85	1.4208	119.46	118.69	120.11	0.60909	0.02183	-0.00013295	NaN	7.9102	42	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82725000	+		23616	18167	17191	17309							0.08534612610947079
IYSECGWLC	9	Unmodified	_IYSECGWLC_					0	0	0		tr|U7SKA6|U7SKA6_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02161PE=4SV=1	tr|U7SKA6|U7SKA6_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02161PE=4SV=1	tr|U7SKA6|U7SKA6_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02161PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	1073.8983154296875	1	1073.44306	1072.43579	-0.042115	-4.5208E-05	1.2813	0.0013754	1.2392	0.0013302	1073.444777165695	119.66	1.5697	119.66	119.23	120.8	0					45	30	2	0	0	0	0.74651	1	44415	44415		8.5933	6.749	1	146320000			23617	29469	17192	17310	23142	23142					-0.09753213842896002
IYSHTPVSL	9	Unmodified	_IYSHTPVSL_					0	0	0		TINAGL1|p.G378R|1|0.27|ENSG00000142910|chr1:31585791-31585791|G/A|missense_variant;ENST00000481165.5_1_1:32051343-32051478:+|nuORF;ENST00000463112.1_1_1:32051343-32052577:+|nuORF;ENST00000480586.1_1_1:32050752-32051478:+|nuORF;nc|ENSG00000142910|Q9GZM7-3|TINAGL1;ENSG00000142910|ENST00000271064|TINAGL1	TINAGL1|p.G378R|1|0.27|ENSG00000142910|chr1:31585791-31585791|G/A|missense_variant	TINAGL1|p.G378R|1|0.27|ENSG00000142910|chr1:31585791-31585791|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	509.1737060546875	2	508.7742	1015.53385	-0.77229	-0.00039292	-1.2398	-0.00063077	-2.0121	-0.0010237	508.7740475051497	75.311	0.71274	76.052	75.775	76.487	0.74052					23	13	2	0	0	0	0.3054	1	28643	28643		30.225	0	1	1941700			23618	5336	17193	17311	23143	23143					0.02670054068948957
IYSKEKKSKL	10	Unmodified	_IYSKEKKSKL_					0	0	0		tr|U7T5T2|U7T5T2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00074PE=4SV=1	tr|U7T5T2|U7T5T2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00074PE=4SV=1	tr|U7T5T2|U7T5T2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00074PE=4SV=1	MSMS	A375_MHC_IP_R1	1	408.6229248046875	3	408.583451	1222.72852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.965	1	66.965	66.465	67.465	0								0	0	0	0.15577	1	24263	24263		2.086	0	1				23619	30029	17194	17312	23144	23144					0.12606805154086942
IYTNANGD	8	Unmodified	_IYTNANGD_					0	0	0			REV__nc|ENSG00000158089|Q96FL9-3|GALNT14	REV__nc|ENSG00000158089|Q96FL9-3|GALNT14	MSMS	A375_MHC_IP_R1	1	434.1695251464844	2	434.195782	866.377011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.69	1	142.69	142.19	143.19	0								0	0	0	0.16876	1	54748	54748		2.5775	0.27475	1		+		23620	27310	17195	17313	23145	23145					-0.06152230821373905
IYTPLTEVF	9	Unmodified	_IYTPLTEVF_					0	0	0			REV__ENST00000607742.5_1_6:158532400-158537340:-|nuORF	REV__ENST00000607742.5_1_6:158532400-158537340:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	541.710693359375	2	541.792058	1081.56956	-0.50546	-0.00027386	2.244	0.0012158	1.7385	0.0009419	541.7935232357356	56.658	0.66097	56.658	56.244	56.905	0					19	12	2	0	0	0	0.69504	1	20394	20394		12.532	5.2423	1	2203900	+		23621	26552	17196	17314	23146	23146					0.03204091525935837
IYTRKKPQESG	11	Unmodified	_IYTRKKPQESG_					0	0	0			REV__ENST00000503900.1_1_5:75207117-75207609:+|nuORF	REV__ENST00000503900.1_1_5:75207117-75207609:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	436.641357421875	3	436.241976	1305.7041	-0.25887	-0.00011293	-0.68023	-0.00029674	-0.9391	-0.00040967	436.24163478862835	24.622	0.2513	24.622	24.498	24.749	0					9	4	3	0	0	0	0.99548	1	7073	7073		5.8681	0.82062	1	3940400	+		23622	25523	17197	17315	23147	23147					0.06347545000539867
IYTRKKPQESG	11	Unmodified	_IYTRKKPQESG_					0	0	0			REV__ENST00000503900.1_1_5:75207117-75207609:+|nuORF	REV__ENST00000503900.1_1_5:75207117-75207609:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	436.241976	1305.7041	-0.52738	-0.00023006	1.1415	0.00049797	0.61412	0.00026791	436.57644727926674	23.984	0.307	24.614	24.384	24.691	0.63014	-0.004237	0.0019548	NaN	5.8681	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1746500	+		23623	25523	17197	17315							0.06347545000539867
IYTYIQNRKYR	11	Unmodified	_IYTYIQNRKYR_					0	0	0			REV__ENSG00000145555|ENST00000513610|MYO10	REV__ENSG00000145555|ENST00000513610|MYO10	MSMS	A375_MHC_IP_R2	2	506.66607666015625	3	506.612292	1516.81505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.537	1	89.269	88.769	89.769	0.7318								0	0	0	0.16337	1	33694	33694		0.40827	0	1		+		23624	19480	17198	17316	23148	23148					0.07731184708654837
IYVECAGIWAK	11	Unmodified	_IYVECAGIWAK_					0	0	0			REV__ENSG00000153975|ENST00000368576|ZUP1	REV__ENSG00000153975|ENST00000368576|ZUP1	MULTI-SECPEP	A375_MHC_IP_R1	1	626.6934814453125	2	626.823366	1251.63218	-0.5854	-0.00036694	-1.0986	-0.00068864	-1.684	-0.0010556	627.3238647206664	81.49	0.30315	81.49	81.253	81.556	0					9	5	2	0	0	0	0.9754	1	29745	29745		8.1555	0	1	783980	+		23625	19859	17199	17317	23149	23149					0.016429143224740983
IYVERAVKQ	9	Unmodified	_IYVERAVKQ_					0	0	0		nc|ENSG00000214021|Q9Y4R7|TTLL3;ENSG00000214021|ENST00000685419|TTLL3	nc|ENSG00000214021|Q9Y4R7|TTLL3	nc|ENSG00000214021|Q9Y4R7|TTLL3	MULTI-MSMS	A375_MHC_IP_R2	2	369.60467529296875	3	369.216991	1104.62914	-0.027539	-1.0168E-05	-1.0204	-0.00037675	-1.048	-0.00038692	369.2165853420218	34.25	0.45991	35.002	34.904	35.364	0.75225					12	8	2	0	0	0	0.69317	1	12325	12325		7.609	0.50723	1	1890800			23626	9598	17200	17318	23150	23150					0.08101407260005544
IYVMPWIPY	9	Unmodified	_IYVMPWIPY_					0	0	0		ENSG00000072071|ENST00000361434|ADGRL1;nc|ENSG00000072071|O94910|ADGRL1	ENSG00000072071|ENST00000361434|ADGRL1	ENSG00000072071|ENST00000361434|ADGRL1	MULTI-SECPEP	A375_MHC_IP_R2	2	591.6239624023438	2	591.306821	1180.59909	-0.6394	-0.00037808	0.97447	0.00057621	0.33507	0.00019813	591.3078118050524	65.145	0.55857	65.883	65.664	66.222	0.73811					14	10	2	0	0	0	0.64653	1	24729	24729		20.871	8.3397	1	894020			23627	1527	17201	17319	23151	23151					0.016013322704566235
IYVSFHDA	8	Unmodified	_IYVSFHDA_					0	0	0			REV__nc|ENSG00000066248|Q8N5V2-3|NGEF	REV__nc|ENSG00000066248|Q8N5V2-3|NGEF	MULTI-SECPEP	A375_MHC_IP_R1	1	475.6767272949219	2	476.232168	950.449782	-0.566	-0.00026955	0.23052	0.00010978	-0.33548	-0.00015977	476.23210247535775	58.049	0.40462	58.049	57.923	58.328	0					12	7	2	0	0	0	0.972	1	20934	20934		10.183	0	1	1175000	+		23628	16512	17202	17320	23152	23152					-0.02742477027948098
IYYFPKVVKTL	11	Unmodified	_IYYFPKVVKTL_					0	0	0		nc|ENSG00000095110|Q8N323-2|NXPE1;ENSG00000095110|ENST00000534921|NXPE1	nc|ENSG00000095110|Q8N323-2|NXPE1	nc|ENSG00000095110|Q8N323-2|NXPE1	MULTI-SECPEP	A375_MHC_IP_R1	1	457.0043029785156	3	457.607596	1369.80096	-0.59784	-0.00027357	1.0724	0.00049075	0.4746	0.00021718	457.94235838075844	140.85	0.25714	140.85	140.65	140.91	0					5	4	2	0	0	0	1.0014	1	54100	54100		0.08335	0.08335	1	281000			23629	2035	17203	17321	23153	23153					0.1308513922763268
IYYNLFTYWSL	11	Unmodified	_IYYNLFTYWSL_					0	0	0			REV__ENSG00000111863|ENST00000414691|ADTRP	REV__ENSG00000111863|ENST00000414691|ADTRP	MULTI-SECPEP	A375_MHC_IP_R2	2	742.2682495117188	2	741.868828	1481.7231	-1.1287	-0.00083732	-0.51386	-0.00038122	-1.6425	-0.0012185	741.868607675683	19.29	0.55727	19.893	19.633	20.19	0.60308					21	10	3	0	0	0	0.99985	1	5906	5906		2.7352	2.7352	1	3550500	+		23630	17701	17204	17322	23154	23154					0.0015108157163012947
IYYSNYYGGY	10	Unmodified	_IYYSNYYGGY_					0	0	0		ENSG00000244624|ENST00000334664|KRTAP20-1	ENSG00000244624|ENST00000334664|KRTAP20-1	ENSG00000244624|ENST00000334664|KRTAP20-1	MULTI-SECPEP	A375_MHC_IP_R2	2	421.9832458496094	3	421.516995	1261.52915	-0.085291	-3.5952E-05	-0.13574	-5.7216E-05	-0.22103	-9.3168E-05	421.5169710626294	67.453	0.45906	68.189	68.052	68.511	0.73631					14	8	2	0	0	0	0.93194	1	25678	25678		3.0723	0	1	1317300			23631	9824	17205	17323	23155	23155					-0.091148748644855
KAADFVKAF	9	Unmodified	_KAADFVKAF_					0	0	0		ENSG00000115946|ENST00000263657|PNO1	ENSG00000115946|ENST00000263657|PNO1	ENSG00000115946|ENST00000263657|PNO1	MULTI-SECPEP	A375_MHC_IP_R1	1	499.4605712890625	2	498.779285	995.544017	-0.05218	-2.6026E-05	-0.14741	-7.3523E-05	-0.19959	-9.9549E-05	498.7791317061899	49.583	0.40583	49.583	49.387	49.793	0					13	7	2	0	0	0	0.049608	1	17511	17511		84.522	29.019	1	2413500			23632	3354	17206	17324	23156	23156					0.046066617941846744
KAADFVKAF	9	Unmodified	_KAADFVKAF_					0	0	0		ENSG00000115946|ENST00000263657|PNO1	ENSG00000115946|ENST00000263657|PNO1	ENSG00000115946|ENST00000263657|PNO1	MULTI-SECPEP	A375_MHC_IP_R2	2	499.460205078125	2	498.779285	995.544017	-0.58356	-0.00029107	-0.6818	-0.00034007	-1.2654	-0.00063113	498.7789696599305	48.659	0.45931	49.416	49.18	49.639	0.75736					17	8	3	0	0	0	0.044425	1	18262	18262		87.258	25.656	1	2763600			23633	3354	17206	17324	23157	23157					0.046066617941846744
KAAEMRRIY	9	Unmodified	_KAAEMRRIY_					0	0	0		ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	MULTI-MSMS	A375_MHC_IP_R1	1	380.2781982421875	3	379.878092	1136.61245	0.28299	0.0001075	0.062795	2.3855E-05	0.34579	0.00013136	379.8780601909349	19.796	0.50913	19.796	19.521	20.03	0					29	9	4	0	0	0	0.67152	1	5054	5054		9.544	0.56773	1	8157000			23634	8733	17207	17325	23158	23158					0.04960583102410965
KAAEMRRIY	9	Unmodified	_KAAEMRRIY_					0	0	0		ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	MULTI-MSMS	A375_MHC_IP_R2	2	380.2767028808594	3	379.878092	1136.61245	-0.22953	-8.7195E-05	-1.7663	-0.00067099	-1.9959	-0.00075818	379.8772781349482	18.855	0.31025	19.458	19.423	19.733	0.60308					22	7	4	0	0	0	0.66474	1	5663	5663		10.151	2.6735	1	45374000			23635	8733	17207	17325	23159	23159					0.04960583102410965
KAAEQAPLLK	10	Unmodified	_KAAEQAPLLK_					0	0	0			REV__ENSG00000197753|ENST00000360215|LHFPL5	REV__ENSG00000197753|ENST00000360215|LHFPL5	MULTI-SECPEP	A375_MHC_IP_R1	1	535.22412109375	2	534.824224	1067.63389	-0.52212	-0.00027924	0.18962	0.00010141	-0.3325	-0.00017783	534.8242845557164	51.581	0.35426	51.581	51.424	51.778	0					12	6	2	0	0	0	0.91932	1	18327	18327		15.739	10.442	1	3054500	+		23636	22310	17208	17326	23160	23160					0.10278291402732975
KAAIHYRKRF	10	Unmodified	_KAAIHYRKRF_					0	0	0		ENSG00000250374|ENST00000503032|TRIM75	ENSG00000250374|ENST00000503032|TRIM75	ENSG00000250374|ENST00000503032|TRIM75	MSMS	A375_MHC_IP_R1	1	645.3134155273438	2	645.383106	1288.75166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.25	1	148.25	147.75	148.75	0								0	0	0	0.15628	1	56617	56617		0.45834	0	1				23637	9846	17209	17327	23161	23161					0.11883288782064483
KAAKKKKKK	9	Unmodified	_KAAKKKKKK_					0	0	0		nc|ENSG00000121766|Q9NP64-2|ZCCHC17;nc|ENSG00000121766|Q9NP64-3|ZCCHC17;ENSG00000121766|ENST00000344147|ZCCHC17	nc|ENSG00000121766|Q9NP64-2|ZCCHC17	nc|ENSG00000121766|Q9NP64-2|ZCCHC17	MSMS	A375_MHC_IP_R1	1	529.423828125	2	529.382043	1056.74953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.929	1	82.929	82.429	83.429	0								0	0	0	0.15486	1	30336	30336		0.52476	0	1				23638	3737	17210	17328	23162	23162					0.22342860044273039
KAAKQSFNLP	10	Unmodified	_KAAKQSFNLP_					0	0	0			REV__ENST00000551650.1_1_12:104238130-104238388:+|nuORF	REV__ENST00000551650.1_1_12:104238130-104238388:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	368.6101989746094	3	368.545108	1102.61349	0.44758	0.00016495	-0.85244	-0.00031416	-0.40486	-0.00014921	368.54481022887455	43.578	2.034	43.578	43.3	45.334	0					47	39	2	0	0	0	0.71763	1	15175	15175		4.4062	1.0865	1	2335600	+		23639	26044	17211	17329	23163	23163					0.06629120742945815
KAAKRKKDE	9	Unmodified	_KAAKRKKDE_					0	0	0			REV__ENSG00000013375|ENST00000513973|PGM3	REV__ENSG00000013375|ENST00000513973|PGM3	MSMS	A375_MHC_IP_R2	2	537.714599609375	2	537.324922	1072.63529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.15	1	136.26	135.76	136.76	0.11134								0	0	0	0.15486	1	53492	53492		4.3292	0	1		+		23640	16234	17212	17330	23164	23164					0.10187925491504757
KAAPGWLKRF	10	Unmodified	_KAAPGWLKRF_					0	0	0		ENST00000481599.1_1_6:39081481-39082817:-|nuORF;ENSG00000112167|ENST00000229903|SAYSD1	ENST00000481599.1_1_6:39081481-39082817:-|nuORF	ENST00000481599.1_1_6:39081481-39082817:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	392.3014221191406	3	391.901226	1172.68185	-0.10006	-3.9215E-05	0.40362	0.00015818	0.30355	0.00011896	391.9013400728642	41.146	0.60669	41.146	40.813	41.419	0					26	11	3	0	0	0	0.22266	1	14210	14210		62.869	49.35	1	6629400			23641	3056	17213	17331	23165	23165					0.10241410113439997
KAAPGWLKRF	10	Unmodified	_KAAPGWLKRF_					0	0	0		ENST00000481599.1_1_6:39081481-39082817:-|nuORF;ENSG00000112167|ENST00000229903|SAYSD1	ENST00000481599.1_1_6:39081481-39082817:-|nuORF	ENST00000481599.1_1_6:39081481-39082817:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	392.5836181640625	3	391.901226	1172.68185	-0.2366	-9.2724E-05	0.19348	7.5826E-05	-0.043118	-1.6898E-05	391.90124988747	40.129	0.50714	40.903	40.626	41.133	0.77451					22	9	4	0	0	0	0.44241	1	14824	14824		31.636	26.339	1	7713900			23642	3056	17213	17331	23166	23166					0.10241410113439997
KACKHLQW	8	Unmodified	_KACKHLQW_					0	0	0		ENST00000485244.1_1_3:149243755-149260220:-|nuORF	ENST00000485244.1_1_3:149243755-149260220:-|nuORF	ENST00000485244.1_1_3:149243755-149260220:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.6740417480469	2	507.271104	1012.52766	-0.36795	-0.00018665	1.3407	0.00068007	0.9727	0.00049342	507.27107878157534	57.528	0.91699	57.528	56.956	57.873	0					32	17	3	0	0	0	0.8824	1	20552	20552		30.225	23.502	1	7719200			23643	12573	17214	17332	23167	23167					0.021892573564286977
KACTIAIRY	9	Unmodified	_KACTIAIRY_					0	0	0		nc|ENSG00000161533|Q15067|ACOX1;nc|ENSG00000161533|Q15067-3|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ENST00000589744.1_1_17:73949530-73951667:-|nuORF	nc|ENSG00000161533|Q15067|ACOX1	nc|ENSG00000161533|Q15067|ACOX1	MULTI-SECPEP	A375_MHC_IP_R2	2	520.1915283203125	2	519.791869	1037.56919	-1.0413	-0.00054124	-0.10189	-5.2959E-05	-1.1432	-0.0005942	519.7918146189087	38.4	0.45531	39.174	38.946	39.401	0.77451					15	8	2	0	0	0	0.67539	1	14170	14170		7.609	1.8485	1	3267300			23644	14715	17215	17333	23168	23168					0.0519039332509692
KADEKKFWGKY	11	Unmodified	_KADEKKFWGKY_					0	0	0		CON__P02769	CON__P02769	CON__P02769	MULTI-MSMS	A375_MHC_IP_R1	1	467.9853210449219	3	467.250472	1398.72959	0.19745	9.2258E-05	-0.42063	-0.00019654	-0.22318	-0.00010428	467.2488551842633	49.259	0.60815	49.259	48.983	49.591	0					32	11	4	0	0	0	0.73239	2	17468	17431;17468		6.6235	2.5068	1	3626400		+	23645	586	17216	17334	23169;23170	23170					0.046170195229706223
KADIGPNL	8	Unmodified	_KADIGPNL_					0	0	0		ENSG00000186871|ENST00000334463|ERCC6L	ENSG00000186871|ENST00000334463|ERCC6L	ENSG00000186871|ENST00000334463|ERCC6L	MSMS	A375_MHC_IP_R1	1	414.2908935546875	2	414.23471	826.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.211	1	40.211	39.711	40.711	0								0	0	0	0.16876	1	13801	13801		10.074	1.4806	1				23646	8787	17217	17335	23171	23171					0.03469826834657397
KADKFKYK	8	Unmodified	_KADKFKYK_					0	0	0			REV__ANK3|p.E2054K|1|0.46|ENSG00000151150|chr10:60074721-60074721|C/T|missense_variant	REV__ANK3|p.E2054K|1|0.46|ENSG00000151150|chr10:60074721-60074721|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	1028.1004638671875	1	1027.59349	1026.58622	-0.07661	-7.8724E-05	-2.8121	-0.0028897	-2.8887	-0.0029684	1027.5923555343243	124.75	0.20098	124.75	124.65	124.85	0					5	3	2	0	0	0	0.97021	1	47178	47178		10.824	2.0785	1	11429000	+		23647	15402	17218	17336	23172	23172					0.07398637202550162
KADMVPNLD	9	Unmodified	_KADMVPNLD_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400	REV__nc|ENSG00000183495|Q96L91-4|EP400	MSMS	A375_MHC_IP_R2	2	501.6570739746094	2	501.749867	1001.48518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.614	1	60.361	59.861	60.861	0.74714								0	0	0	0.15142	1	22560	22560		19.257	3.4098	1		+		23648	21760	17219	17337	23173	23173					-0.015501825624596677
KADSLDKLY	9	Unmodified	_KADSLDKLY_					0	0	0		RP1|p.E1903K|1|0.62|ENSG00000104237|chr8:54629589-54629589|G/A|missense_variant	RP1|p.E1903K|1|0.62|ENSG00000104237|chr8:54629589-54629589|G/A|missense_variant	RP1|p.E1903K|1|0.62|ENSG00000104237|chr8:54629589-54629589|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	526.6610717773438	2	526.784764	1051.55498	-0.76799	-0.00040456	0.42593	0.00022437	-0.34206	-0.00018019	526.784727053898	26.742	0.20429	27.402	27.313	27.517	0.65992					7	3	3	0	0	0	0.69381	1	9070	9070		20.415	1.1575	1	1587100			23649	29089	17220	17338	23174	23174					0.03126019377805278
KADSLDKLY	9	Unmodified	_KADSLDKLY_					0	0	0		RP1|p.E1903K|1|0.62|ENSG00000104237|chr8:54629589-54629589|G/A|missense_variant	RP1|p.E1903K|1|0.62|ENSG00000104237|chr8:54629589-54629589|G/A|missense_variant	RP1|p.E1903K|1|0.62|ENSG00000104237|chr8:54629589-54629589|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	526.784764	1051.55498	-0.55341	-0.00029153	0.034192	1.8012E-05	-0.51922	-0.00027352	526.7846634063055	27.371	0.25293	27.371	27.229	27.482	0	-0.015328	-0.00020454	NaN	20.415	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1448800			23650	29089	17220	17338							0.03126019377805278
KAEAKLRSAGR	11	Unmodified	_KAEAKLRSAGR_					0	0	0		ENST00000330793.1_1_17:72541920-72542076:-|nuORF	ENST00000330793.1_1_17:72541920-72542076:-|nuORF	ENST00000330793.1_1_17:72541920-72542076:-|nuORF	MSMS	A375_MHC_IP_R1	1	396.1446533203125	3	396.238678	1185.6942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.303	1	74.303	73.803	74.803	0								0	0	0	0.162	1	27064	27064		8.2864	0.13091	1				23651	10763	17221	17339	23175	23175					0.10878401785817005
KAEKKERERKK	11	Unmodified	_KAEKKERERKK_					0	0	0		ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	MSMS	A375_MHC_IP_R1	1	714.9512329101562	2	715.433524	1428.85249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.56	1	143.56	143.06	144.06	0								0	0	0	0.16339	1	55070	55070		1.0715	0.61312	1				23652	6304	17222	17340	23176	23176					0.15522275974240074
KAEKVPKGKK	10	Unmodified	_KAEKVPKGKK_					0	0	0		ENST00000425872.1_1_1:8953615-8953837:+|nuORF	ENST00000425872.1_1_1:8953615-8953837:+|nuORF	ENST00000425872.1_1_1:8953615-8953837:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	557.394775390625	2	556.861141	1111.70773	-0.89722	-0.00049962	0.21723	0.00012097	-0.67999	-0.00037866	556.8610168995511	149.79	1.6439	149.79	148.36	150	0					161	55	4	0	0	0	0.72591	1	56822	56822		0.40072	0	1	783190			23653	11797	17223	17341	23177	23177					0.15634259565081265
KAENAAPQDLL	11	Unmodified	_KAENAAPQDLL_					0	0	0		nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3;ENSG00000262209|ENST00000576222|PCDHGB3	nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3	nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3	MSMS	A375_MHC_IP_R2	2	585.310302734375	2	585.311677	1168.6088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.08	1	142.11	141.61	142.61	0.030731								0	0	0	0.16223	1	55551	55551		7.1017	0.89594	1				23654	9943	17224	17342	23178	23178					0.031241918095020083
KAETVQHLF	9	Unmodified	_KAETVQHLF_					0	0	0			REV__ENST00000433126.1_1_20:61296516-61296777:-|nuORF	REV__ENST00000433126.1_1_20:61296516-61296777:-|nuORF	MSMS	A375_MHC_IP_R1	1	536.7048950195312	2	536.792924	1071.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.757	1	68.757	68.257	69.257	0								0	0	0	0.15135	1	24939	24939		20.454	2.0805	1		+		23655	24725	17225	17343	23179	23179					0.038371453345462214
KAEWLAWLA	9	Unmodified	_KAEWLAWLA_					0	0	0			REV__SVA_D_dup914|chr11:75876850-75878935:-|1.3000520484701088|0.1350535341105196|3.27|462.0|72|2|anti-sense	REV__SVA_D_dup914|chr11:75876850-75878935:-|1.3000520484701088|0.1350535341105196|3.27|462.0|72|2|anti-sense	MULTI-SECPEP	A375_MHC_IP_R1	1	545.08447265625	2	544.300384	1086.58622	-0.34313	-0.00018677	2.3868	0.0012991	2.0437	0.0011124	544.3015888205006	92.429	0.55775	92.429	92.16	92.718	0					16	10	2	0	0	0	0.50702	1	33889	33889		25.399	25.399	1	1574600	+		23656	28069	17226	17344	23180	23180					0.04638637202560858
KAEYEGMMGGY	11	Unmodified	_KAEYEGMMGGY_					0	0	0		nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	MULTI-MSMS	A375_MHC_IP_R2	2	618.7102661132812	2	618.257199	1234.49985	-0.91197	-0.00056383	-0.87118	-0.00053861	-1.7831	-0.0011024	618.2563639691933	41.166	0.65908	41.94	41.641	42.3	0.77451					20	12	2	0	0	0	0.73378	1	15325	15325		5.2969	0	1	2049800			23657	14724	17227	17345	23181	23181					-0.10802478476603028
KAEYEGMMGGY	11	Unmodified	_KAEYEGMMGGY_					0	0	0		nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	MULTI-MATCH	A375_MHC_IP_R1	1		2	618.257199	1234.49985	-0.64652	-0.00039972	-0.47132	-0.0002914	-1.1178	-0.00069111	618.2564454232499	41.562	0.66563	41.562	41.266	41.932	0	-0.18933	0.00030747	NaN	5.2969	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1589600			23658	14724	17227	17345							-0.10802478476603028
KAFARPPG	8	Unmodified	_KAFARPPG_					0	0	0			REV__ENST00000544724.5_1_12:122337523-122354214:+|nuORF	REV__ENST00000544724.5_1_12:122337523-122354214:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	421.9447326660156	2	422.245412	842.476272	-0.71474	-0.0003018	-0.06938	-2.9296E-05	-0.78412	-0.00033109	422.2453099635759	28.66	0.20036	29.358	29.234	29.434	0.69872					5	3	2	0	0	0	0.77603	1	9964	9964		9.3474	0.75416	1	17747000	+		23659	17642	17228	17346	23182	23182					0.04873256654036595
KAFARPWSL	9	Unmodified	_KAFARPWSL_					0	0	0		ENSG00000218891|ENST00000325421|ZNF579	ENSG00000218891|ENST00000325421|ZNF579	ENSG00000218891|ENST00000325421|ZNF579	MULTI-SECPEP	A375_MHC_IP_R1	1	538.7057495117188	2	538.306001	1074.59745	-0.55852	-0.00030065	-0.13025	-7.0117E-05	-0.68877	-0.00037077	538.30578513096	56.566	0.66097	56.566	56.244	56.905	0					26	10	3	0	0	0	0.074405	1	20242	20242		70.332	57.29	1	9216700			23660	9659	17229	17347	23183	23183					0.06313459296711699
KAFARPWSL	9	Unmodified	_KAFARPWSL_					0	0	0		ENSG00000218891|ENST00000325421|ZNF579	ENSG00000218891|ENST00000325421|ZNF579	ENSG00000218891|ENST00000325421|ZNF579	MULTI-SECPEP	A375_MHC_IP_R2	2	538.70556640625	2	538.306001	1074.59745	-0.94082	-0.00050645	-0.069215	-3.7259E-05	-1.01	-0.00054371	538.3057865198753	55.557	0.60751	56.308	55.984	56.591	0.75075					30	11	4	0	0	0	0.20059	1	20955	20955		51.415	33.269	1	7482600			23661	9659	17229	17347	23184	23184					0.06313459296711699
KAFDFPSSF	9	Unmodified	_KAFDFPSSF_					0	0	0		ENSG00000198551|ENST00000361113|ZNF627	ENSG00000198551|ENST00000361113|ZNF627	ENSG00000198551|ENST00000361113|ZNF627	MULTI-MSMS	A375_MHC_IP_R1	1	524.6890258789062	2	523.2531	1044.49165	-0.52499	-0.0002747	0.17419	9.1143E-05	-0.3508	-0.00018356	523.2530953910205	89.703	1.2164	89.703	89.221	90.437	0					64	23	4	0	0	0	0.2487	1	32904	32904		34.402	13.948	1	45043000			23662	9281	17230	17348	23185	23185					-0.02881921339417204
KAFDFPSSF	9	Unmodified	_KAFDFPSSF_					0	0	0		ENSG00000198551|ENST00000361113|ZNF627	ENSG00000198551|ENST00000361113|ZNF627	ENSG00000198551|ENST00000361113|ZNF627	MULTI-SECPEP	A375_MHC_IP_R2	2	523.6922607421875	2	523.2531	1044.49165	-0.47544	-0.00024877	-0.23642	-0.00012371	-0.71186	-0.00037248	523.2528563141203	88.896	0.95747	89.628	89.228	90.186	0.7318					64	18	5	0	0	0	0.028087	1	33809	33809		106.94	38.859	1	39696000			23663	9281	17230	17348	23186	23186					-0.02881921339417204
KAFDITYV	8	Unmodified	_KAFDITYV_					0	0	0		ENSG00000135862|ENST00000258341|LAMC1;LAMC1|p.R149S|1|0.26|ENSG00000135862|chr1:183103354-183103354|C/A|missense_variant	ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	MULTI-MSMS	A375_MHC_IP_R1	1	479.1575927734375	2	478.758018	955.501483	-0.21926	-0.00010497	0.13442	6.4355E-05	-0.084841	-4.0618E-05	478.75798824247323	71.879	0.45407	71.879	71.665	72.119	0					18	8	3	0	0	0	0.47739	1	26118	26118		49.933	7.8384	1	7799500			23664	4722	17231	17349	23187	23187					0.02195266665944473
KAFDITYV	8	Unmodified	_KAFDITYV_					0	0	0		ENSG00000135862|ENST00000258341|LAMC1;LAMC1|p.R149S|1|0.26|ENSG00000135862|chr1:183103354-183103354|C/A|missense_variant	ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	MULTI-MSMS	A375_MHC_IP_R2	2	479.1572570800781	2	478.758018	955.501483	-0.70317	-0.00033665	0.17523	8.3895E-05	-0.52793	-0.00025275	478.75796458401504	71.073	0.50606	71.807	71.605	72.111	0.73421					21	9	3	0	0	0	0.30248	1	26941	26941		58.679	3.9053	1	8790100			23665	4722	17231	17349	23188	23188					0.02195266665944473
KAFDNPTSFQK	11	Unmodified	_KAFDNPTSFQK_					0	0	0		ENST00000430298.6_1_19:12222347-12224207:+|nuORF	ENST00000430298.6_1_19:12222347-12224207:+|nuORF	ENST00000430298.6_1_19:12222347-12224207:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	428.6626281738281	3	428.21906	1281.63535	-0.029207	-1.2507E-05	0.016498	7.0647E-06	-0.012709	-5.4423E-06	428.219166031172	51.265	0.40672	51.265	51.068	51.475	0					11	7	2	0	0	0	1.0004	1	18134	18134		0.073264	0	1	1597400			23666	11853	17232	17350	23189	23189					0.00579880700843205
KAFDQRLTF	9	Unmodified	_KAFDQRLTF_					0	0	0		ENSG00000178498|ENST00000337737|DTX3;nc|ENSG00000178498|Q8N9I9-2|DTX3	ENSG00000178498|ENST00000337737|DTX3	ENSG00000178498|ENST00000337737|DTX3	MULTI-SECPEP	A375_MHC_IP_R1	1	376.2733154296875	3	375.873224	1124.59784	0.48165	0.00018104	0.38499	0.00014471	0.86663	0.00032574	375.8733032726009	51.533	0.55964	51.533	51.219	51.778	0					24	10	3	0	0	0	0.41434	1	18290	18290		19.626	4.0875	1	4835300			23667	8162	17233	17351	23190	23190					0.040528342258767225
KAFDQRLTF	9	Unmodified	_KAFDQRLTF_					0	0	0		ENSG00000178498|ENST00000337737|DTX3;nc|ENSG00000178498|Q8N9I9-2|DTX3	ENSG00000178498|ENST00000337737|DTX3	ENSG00000178498|ENST00000337737|DTX3	MULTI-SECPEP	A375_MHC_IP_R1	1	563.7060546875	2	563.306198	1124.59784	-0.28862	-0.00016258	0.27614	0.00015555	-0.012473	-7.0263E-06	563.3062036501445	51.505	0.55964	51.505	51.219	51.778	0					27	10	3	0	0	0	0.13208	1	18264	18264		66.457	46.003	1	16487000			23668	8162	17233	17351	23191	23191					0.040528342258767225
KAFDQRLTF	9	Unmodified	_KAFDQRLTF_					0	0	0		ENSG00000178498|ENST00000337737|DTX3;nc|ENSG00000178498|Q8N9I9-2|DTX3	ENSG00000178498|ENST00000337737|DTX3	ENSG00000178498|ENST00000337737|DTX3	MULTI-SECPEP	A375_MHC_IP_R2	2	376.2732238769531	3	375.873224	1124.59784	0.14426	5.4225E-05	0.51644	0.00019412	0.66071	0.00024834	375.87330230453085	50.686	0.50667	51.44	51.108	51.615	0.75406					22	9	3	0	0	0	0.47674	1	19058	19058		22.775	9.1601	1	5635100			23669	8162	17233	17351	23192	23192					0.040528342258767225
KAFDQRLTF	9	Unmodified	_KAFDQRLTF_					0	0	0		ENSG00000178498|ENST00000337737|DTX3;nc|ENSG00000178498|Q8N9I9-2|DTX3	ENSG00000178498|ENST00000337737|DTX3	ENSG00000178498|ENST00000337737|DTX3	MULTI-SECPEP	A375_MHC_IP_R2	2	563.7056274414062	2	563.306198	1124.59784	-0.64124	-0.00036121	0.23778	0.00013394	-0.40346	-0.00022727	563.3062809256774	50.663	0.60587	51.417	51.159	51.765	0.75406					31	11	4	0	0	0	0.011004	1	19030	19030		143.91	83.835	1	12721000			23670	8162	17233	17351	23193	23193					0.040528342258767225
KAFDRPSLF	9	Unmodified	_KAFDRPSLF_					0	0	0		ENSG00000249709|ENST00000339282|ZNF564;ENST00000593682.1_1_19:12637262-12688404:-|nuORF	ENSG00000249709|ENST00000339282|ZNF564	ENSG00000249709|ENST00000339282|ZNF564	MULTI-SECPEP	A375_MHC_IP_R1	1	541.1952514648438	2	540.795466	1079.57638	-0.59498	-0.00032176	-0.025439	-1.3757E-05	-0.62042	-0.00033552	540.7954396754837	57.335	0.76341	57.335	57.059	57.822	0					38	14	4	0	0	0	0.14273	1	20527	20527		74.2	57.257	1	32124000			23671	9840	17234	17352	23194	23194					0.039774491971684256
KAFDRPSLF	9	Unmodified	_KAFDRPSLF_					0	0	0		ENSG00000249709|ENST00000339282|ZNF564;ENST00000593682.1_1_19:12637262-12688404:-|nuORF	ENSG00000249709|ENST00000339282|ZNF564	ENSG00000249709|ENST00000339282|ZNF564	MULTI-MSMS	A375_MHC_IP_R2	2	361.265869140625	3	360.86607	1079.57638	-0.52157	-0.00018822	0.21576	7.786E-05	-0.30581	-0.00011036	360.86611608177543	56.377	0.81484	57.128	56.847	57.662	0.75015					50	15	5	0	0	0	0.10637	1	21273	21273		49.527	16.082	1	40895000			23672	9840	17234	17352	23195	23195					0.039774491971684256
KAFDRPSLF	9	Unmodified	_KAFDRPSLF_					0	0	0		ENSG00000249709|ENST00000339282|ZNF564;ENST00000593682.1_1_19:12637262-12688404:-|nuORF	ENSG00000249709|ENST00000339282|ZNF564	ENSG00000249709|ENST00000339282|ZNF564	MULTI-SECPEP	A375_MHC_IP_R2	2	541.1949462890625	2	540.795466	1079.57638	-1.166	-0.00063055	0.25393	0.00013732	-0.91205	-0.00049323	540.7956632329433	56.376	0.71408	57.126	56.847	57.561	0.75015					36	13	4	0	0	0	0.14273	1	21275	21275		65.474	65.474	1	35728000			23673	9840	17234	17352	23196	23196					0.039774491971684256
KAFDYPSLF	9	Unmodified	_KAFDYPSLF_					0	0	0		ENSG00000198551|ENST00000361113|ZNF627	ENSG00000198551|ENST00000361113|ZNF627	ENSG00000198551|ENST00000361113|ZNF627	MULTI-MSMS	A375_MHC_IP_R1	1	544.6760864257812	2	544.276575	1086.5386	-0.54705	-0.00029775	0.12102	6.5869E-05	-0.42603	-0.00023188	544.27658035183	100.36	1.2158	100.36	99.925	101.14	0					64	23	4	0	0	0	0.032333	1	36811	36811		72.968	23.035	1	56404000			23674	9281	17235	17353	23197	23197					-0.0012106178830890713
KAFDYPSLF	9	Unmodified	_KAFDYPSLF_					0	0	0		ENSG00000198551|ENST00000361113|ZNF627	ENSG00000198551|ENST00000361113|ZNF627	ENSG00000198551|ENST00000361113|ZNF627	MULTI-MSMS	A375_MHC_IP_R2	2	544.67626953125	2	544.276575	1086.5386	-0.57485	-0.00031288	-0.13943	-7.5886E-05	-0.71428	-0.00038877	544.2763854425881	99.519	1.1196	100.28	99.912	101.03	0.76277					70	21	5	0	0	0	0.050868	1	37684	37684		63.961	34.879	1	42923000			23675	9281	17235	17353	23198	23198					-0.0012106178830890713
KAFDYPSRF	9	Unmodified	_KAFDYPSRF_					0	0	0		ENSG00000196646|ENST00000343979|ZNF136;ENST00000464860.1_1_19:12296590-12298813:+|nuORF	ENSG00000196646|ENST00000343979|ZNF136	ENSG00000196646|ENST00000343979|ZNF136	MULTI-SECPEP	A375_MHC_IP_R1	1	377.9261169433594	3	377.525825	1129.55564	0.51361	0.0001939	-0.028802	-1.0873E-05	0.48481	0.00018303	377.525781852822	45.788	0.80851	45.788	45.183	45.992	0					31	15	3	0	0	0	0.14572	1	16023	16023		29.437	4.5556	1	5024800			23676	9068	17236	17354	23199	23199					-0.003951411825028117
KAFDYPSRF	9	Unmodified	_KAFDYPSRF_					0	0	0		ENSG00000196646|ENST00000343979|ZNF136;ENST00000464860.1_1_19:12296590-12298813:+|nuORF	ENSG00000196646|ENST00000343979|ZNF136	ENSG00000196646|ENST00000343979|ZNF136	MULTI-SECPEP	A375_MHC_IP_R2	2	377.9257507324219	3	377.525825	1129.55564	0.052388	1.9778E-05	0.30138	0.00011378	0.35377	0.00013356	377.5257811801737	44.903	0.96619	45.672	45.035	46.001	0.7691					29	18	3	0	0	0	0.056023	1	16774	16774		53.317	23.88	1	9272300			23677	9068	17236	17354	23200	23200					-0.003951411825028117
KAFDYPSRF	9	Unmodified	_KAFDYPSRF_					0	0	0		ENSG00000196646|ENST00000343979|ZNF136;ENST00000464860.1_1_19:12296590-12298813:+|nuORF	ENSG00000196646|ENST00000343979|ZNF136	ENSG00000196646|ENST00000343979|ZNF136	MULTI-SECPEP	A375_MHC_IP_R2	2	566.1846313476562	2	565.785099	1129.55564	-0.5413	-0.00030626	-0.092969	-5.26E-05	-0.63427	-0.00035886	565.7850136931319	44.928	0.76423	45.697	45.39	46.154	0.76909					45	14	5	0	0	0	0.13244	1	16776	16776		59.368	28.732	1	11529000			23678	9068	17236	17354	23201	23201					-0.003951411825028117
KAFFWLSL	8	Unmodified	_KAFFWLSL_					0	0	0		ZNF799|p.P209L|1|0.43|ENSG00000196466|chr19:12391772-12391772|G/A|missense_variant	ZNF799|p.P209L|1|0.43|ENSG00000196466|chr19:12391772-12391772|G/A|missense_variant	ZNF799|p.P209L|1|0.43|ENSG00000196466|chr19:12391772-12391772|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	506.18463134765625	2	506.286746	1010.55894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.84	1	24.84	24.34	25.34	0								0	0	0	0.16876	1	7140	7140		13.508	2.684	1				23679	30245	17237	17355	23202	23202					0.054081536621765736
KAFISSNSF	9	Unmodified	_KAFISSNSF_					0	0	0		ENSG00000257446|ENST00000547628|ZNF878;ZNF878|p.L495F|1|0.31|ENSG00000257446|chr19:12043918-12043918|G/A|missense_variant	ENSG00000257446|ENST00000547628|ZNF878	ENSG00000257446|ENST00000547628|ZNF878	MULTI-SECPEP	A375_MHC_IP_R1	1	500.143310546875	2	500.758549	999.502546	-0.72006	-0.00036058	1.2858	0.00064388	0.56574	0.0002833	501.25968070032104	67.478	0.25507	67.478	67.348	67.603	0					5	4	2	0	0	0	0.65246	1	24473	24473		21.747	2.3076	1	763920			23680	9910	17238	17356	23203	23203					0.00277481034856919
KAFIYPTSF	9	Unmodified	_KAFIYPTSF_					0	0	0		nc|ENSG00000173875|Q3KP31-2|ZNF791;ENSG00000173875|ENST00000343325|ZNF791	nc|ENSG00000173875|Q3KP31-2|ZNF791	nc|ENSG00000173875|Q3KP31-2|ZNF791	MULTI-SECPEP	A375_MHC_IP_R1	1	537.7077026367188	2	537.286943	1072.55933	-0.70083	-0.00037655	0.92137	0.00049504	0.22053	0.00011849	537.2876630541933	81.429	0.75896	81.429	80.999	81.758	0					24	14	3	0	0	0	0.087712	1	29763	29763		66.457	30.33	1	3602200			23681	7836	17239	17357	23204	23204					0.0259552859138239
KAFIYPTSF	9	Unmodified	_KAFIYPTSF_					0	0	0		nc|ENSG00000173875|Q3KP31-2|ZNF791;ENSG00000173875|ENST00000343325|ZNF791	nc|ENSG00000173875|Q3KP31-2|ZNF791	nc|ENSG00000173875|Q3KP31-2|ZNF791	MULTI-MSMS	A375_MHC_IP_R2	2	537.6879272460938	2	537.286943	1072.55933	-0.92247	-0.00049563	1.8604	0.00099956	0.93792	0.00050393	537.2878046959634	80.595	0.76604	81.34	81.062	81.828	0.74474					18	14	2	0	0	0	0.14659	1	30623	30623		53.833	11.738	1	3026500			23682	7836	17239	17357	23205	23205					0.0259552859138239
KAFLIRLL	8	Unmodified	_KAFLIRLL_					0	0	0		nc|ENSG00000164307|Q9NZ08-2|ERAP1;ENSG00000164307|ENST00000443439|ERAP1	nc|ENSG00000164307|Q9NZ08-2|ERAP1	nc|ENSG00000164307|Q9NZ08-2|ERAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	487.73114013671875	2	487.331488	972.648422	-0.24976	-0.00012172	0.040433	1.9704E-05	-0.20933	-0.00010201	487.33132402304255	87.923	0.61209	87.923	87.593	88.205	0					22	11	3	0	0	0	0.77651	1	32254	32254		26.884	5.137	1	6949600			23683	6821	17240	17358	23206	23206					0.16100408341560524
KAFLIRLL	8	Unmodified	_KAFLIRLL_					0	0	0		nc|ENSG00000164307|Q9NZ08-2|ERAP1;ENSG00000164307|ENST00000443439|ERAP1	nc|ENSG00000164307|Q9NZ08-2|ERAP1	nc|ENSG00000164307|Q9NZ08-2|ERAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	487.7302551269531	2	487.331488	972.648422	-0.45118	-0.00021987	0.16131	7.8613E-05	-0.28986	-0.00014126	487.33143054860585	86.674	0.61226	87.407	87.1	87.712	0.733					24	11	3	0	0	0	0.16604	1	32923	32923		100.37	7.5494	1	6124800			23684	6821	17240	17358	23207	23207					0.16100408341560524
KAFLPRML	8	Unmodified	_KAFLPRML_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MULTI-SECPEP	A375_MHC_IP_R1	1	488.6710510253906	2	488.294048	974.573543	-0.21376	-0.00010438	1.511	0.00073781	1.2972	0.00063343	488.2947017956093	63.248	0.40838	63.248	63.069	63.477	0					14	7	2	0	0	0	0.93661	1	22881	22881		10.824	6.4947	1	4365700			23685	6540	17241	17359	23208	23208					0.0852390253868407
KAFLPRML	8	Unmodified	_KAFLPRML_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MULTI-SECPEP	A375_MHC_IP_R2	2	487.9314880371094	2	488.294048	974.573543	-0.74556	-0.00036405	1.9608	0.00095744	1.2152	0.00059338	488.29486946891876	62.12	0.71155	62.863	62.622	63.333	0.74263					25	13	2	0	0	0	0.92636	1	23593	23593		11.64	0	1	3305000			23686	6540	17241	17359	23209	23209					0.0852390253868407
KAFLWEKRYYC	11	Unmodified	_KAFLWEKRYYC_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	A375_MHC_IP_R2	2	503.6789855957031	3	502.92359	1505.74894	-0.75806	-0.00038125	2.2612	0.0011372	1.5031	0.00075596	503.2593667289861	96.699	0.50429	97.455	97.165	97.67	0.75586					19	9	3	0	0	0	0.73679	1	36765	36765		2.4348	1.1051	1	2333800			23687	1000	17242	17360	23210	23210					0.016296525422603736
KAFNGPSTF	9	Unmodified	_KAFNGPSTF_					0	0	0		ENSG00000096654|ENST00000683788|ZNF184	ENSG00000096654|ENST00000683788|ZNF184	ENSG00000096654|ENST00000683788|ZNF184	MULTI-SECPEP	A375_MHC_IP_R2	2	484.1609802246094	2	484.745442	967.476331	-0.7177	-0.0003479	0.27569	0.00013364	-0.44201	-0.00021426	484.74558843252817	41.5	0.66101	42.274	41.946	42.607	0.77451					19	12	2	0	0	0	0.059859	1	15410	15410		81.89	43.739	1	5614100			23688	2059	17243	17361	23211	23211					-0.008707881366262882
KAFNVISAW	9	Unmodified	_KAFNVISAW_					0	0	0		nc|ENSG00000115107|Q658P3-4|STEAP3;nc|ENSG00000115107|Q658P3-3|STEAP3;nc|ENSG00000115107|Q658P3|STEAP3;ENSG00000115107|ENST00000393110|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	MULTI-SECPEP	A375_MHC_IP_R1	1	518.6845703125	2	518.284734	1034.55492	-0.48442	-0.00025107	-0.0016367	-8.4827E-07	-0.48605	-0.00025191	518.2849080884465	88.159	0.61093	88.159	87.696	88.307	0					19	11	2	0	0	0	0.14422	1	32349	32349		52.268	3.9225	1	4732400			23689	3269	17244	17362	23212	23212					0.03902064168482866
KAFNVISAW	9	Unmodified	_KAFNVISAW_					0	0	0		nc|ENSG00000115107|Q658P3-4|STEAP3;nc|ENSG00000115107|Q658P3-3|STEAP3;nc|ENSG00000115107|Q658P3|STEAP3;ENSG00000115107|ENST00000393110|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	MULTI-SECPEP	A375_MHC_IP_R2	2	517.6815185546875	2	518.284734	1034.55492	-0.6043	-0.0003132	-0.5387	-0.0002792	-1.143	-0.0005924	518.2846593499855	87.359	1.1648	88.092	87.203	88.368	0.733					28	22	2	0	0	0	0.083712	1	33186	33186		65.235	25.278	1	3222300			23690	3269	17244	17362	23213	23213					0.03902064168482866
KAFPEHFTY	9	Unmodified	_KAFPEHFTY_					0	0	0		nc|ENSG00000104812|P13807-2|GYS1;ENSG00000104812|ENST00000323798|GYS1	nc|ENSG00000104812|P13807-2|GYS1	nc|ENSG00000104812|P13807-2|GYS1	MULTI-SECPEP	A375_MHC_IP_R1	1	570.6796264648438	2	570.279649	1138.54475	0.14338	8.1765E-05	-0.11295	-6.4413E-05	0.030428	1.7352E-05	570.2794503242292	44.547	0.6104	44.547	44.318	44.928	0					25	11	3	0	0	0	0.028087	1	15558	15558		86.332	57.25	1	4257900			23691	2538	17245	17363	23214	23214					-0.018985435567628883
KAFPEHFTY	9	Unmodified	_KAFPEHFTY_					0	0	0		nc|ENSG00000104812|P13807-2|GYS1;ENSG00000104812|ENST00000323798|GYS1	nc|ENSG00000104812|P13807-2|GYS1	nc|ENSG00000104812|P13807-2|GYS1	MULTI-MSMS	A375_MHC_IP_R2	2	570.6792602539062	2	570.279649	1138.54475	-0.11139	-6.3521E-05	-0.36447	-0.00020785	-0.47585	-0.00027137	570.2792251764381	43.735	0.55445	44.505	44.228	44.782	0.7691					24	10	3	0	0	0	0.0096896	3	16347	16261;16307;16347		110.67	81.593	1	4923400			23692	2538	17245	17363	23215;23216;23217	23217					-0.018985435567628883
KAFPKAYLL	9	Unmodified	_KAFPKAYLL_					0	0	0		ENSG00000167967|ENST00000301727|E4F1;ENST00000569796.1_1_16:2284038-2284419:+|nuORF	ENSG00000167967|ENST00000301727|E4F1	ENSG00000167967|ENST00000301727|E4F1	MULTI-SECPEP	A375_MHC_IP_R2	2	525.684814453125	2	525.820953	1049.62735	-0.61206	-0.00032183	-0.63954	-0.00033628	-1.2516	-0.00065812	525.8205211663877	55.855	0.81399	56.605	56.186	57	0.75014					28	15	2	0	0	0	0.35487	1	21108	21108		36.127	5.9022	1	2152600			23693	7242	17246	17364	23218	23218					0.10452398242023264
KAFRHILNF	9	Unmodified	_KAFRHILNF_					0	0	0		nc|ENSG00000213859|Q693B1|KCTD11;ENSG00000213859|ENST00000333751|KCTD11	nc|ENSG00000213859|Q693B1|KCTD11	nc|ENSG00000213859|Q693B1|KCTD11	MULTI-MSMS	A375_MHC_IP_R1	1	382.95745849609375	3	382.557459	1144.65055	0.28898	0.00011055	-2.7224	-0.0010415	-2.4335	-0.00093094	382.5574155026821	50.466	0.55974	50.466	50.204	50.764	0					18	10	2	0	0	0	0.4875	1	17895	17895		20.415	3.8487	1	2499100			23694	9584	17247	17365	23219	23219					0.08400837079352641
KAFRHKFYL	9	Unmodified	_KAFRHKFYL_					0	0	0		ZNF766|p.S369Y|1|0.33|ENSG00000196214|chr19:52290897-52290897|C/A|missense_variant	ZNF766|p.S369Y|1|0.33|ENSG00000196214|chr19:52290897-52290897|C/A|missense_variant	ZNF766|p.S369Y|1|0.33|ENSG00000196214|chr19:52290897-52290897|C/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	403.70538330078125	3	403.901226	1208.68185	-0.33245	-0.00013428	-3.2568	-0.0013154	-3.5893	-0.0014497	403.8996640471614	22.967	0.15363	23.597	23.521	23.675	0.63014					4	2	2	0	0	0	0.73008	1	7316	7316		12.241	2.6967	1	1729200			23695	30241	17248	17366	23220	23220					0.08585410113460057
KAFRLPGL	8	Unmodified	_KAFRLPGL_					0	0	0		nc|ENSG00000130475|O14526-3|FCHO1;nc|ENSG00000130475|O14526-2|FCHO1;ENSG00000130475|ENST00000596536|FCHO1;ENST00000600393.1_1_19:17881687-17885288:+|nuORF	nc|ENSG00000130475|O14526-3|FCHO1	nc|ENSG00000130475|O14526-3|FCHO1	MULTI-SECPEP	A375_MHC_IP_R1	1	451.68450927734375	2	451.284537	900.554522	-0.17182	-7.7539E-05	-0.018533	-8.3638E-06	-0.19035	-8.5903E-05	451.2845160252159	61.641	0.45759	61.641	61.382	61.839	0					15	8	3	0	0	0	0.93661	1	22241	22241		15.847	2.3393	1	2249500			23696	4245	17249	17367	23221	23221					0.10026689239259667
KAFYVPAQY	9	Unmodified	_KAFYVPAQY_					0	0	0		nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12;nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-SECPEP	A375_MHC_IP_R2	2	544.0307006835938	2	543.784567	1085.55458	-1.1648	-0.00063339	-0.33374	-0.00018148	-1.4985	-0.00081487	543.7837760212665	58.667	0.45654	59.416	59.237	59.693	0.74888					15	8	2	0	0	0	0.67471	1	22165	22165		18.146	4.6385	1	1303000			23697	6941	17250	17368	23222	23222					0.01522644448596111
KAGFAALQ	8	Unmodified	_KAGFAALQ_					0	0	0		ENST00000462000.1_1_2:174945834-174988397:-|nuORF;ENST00000396387.2_1_22:42503789-42504386:-|nuORF;ENST00000392560.6_1_2:174940156-174989039:-|nuORF;nc|ENSG00000138430|Q9NTK5-2|OLA1;ENSG00000138430|ENST00000284719|OLA1	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	MSMS	A375_MHC_IP_R1	1	403.63250732421875	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.8197	1	4.8197	4.3197	5.3197	0								0	0	0	0.16876	1	1099	1099		2.5775	0.51773	1				23698	4992	17251	17369	23223	23223					0.03934148042844754
KAGGGGAG	8	Unmodified	_KAGGGGAG_					0	0	0			REV__ENSG00000180828|ENST00000321870|BHLHE22	REV__ENSG00000180828|ENST00000321870|BHLHE22	MULTI-SECPEP	A375_MHC_IP_R1	1	574.96142578125	1	574.29435	573.287074	-0.38187	-0.00021931	-3.4329	-0.0019715	-3.8148	-0.0021908	574.2912269869787	84.256	0.45399	84.256	83.937	84.391	0					13	8	3	0	0	0	0.972	1	30817	30817		0	0	1	695100	+		23699	21623	17252	17370	23224	23224					-0.016638156392787096
KAGIIQDTW	9	Unmodified	_KAGIIQDTW_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MSMS	A375_MHC_IP_R2	2	516.679443359375	2	516.279649	1030.54475	-1.1434	-0.00059029	2.1691	0.0011199	1.0258	0.00052958	516.279775514305	59.593	1.1635	60.34	59.793	60.957	0.74714					44	22	3	0	0	0	0.02114	1	22542	22542		82.529	4.3799	1	14249000			23700	3998	17253	17371	23225	23225					0.030694564432451443
KAGILTTL	8	Unmodified	_KAGILTTL_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MULTI-SECPEP	A375_MHC_IP_R2	2	409.1631164550781	2	408.763104	815.511654	-0.37281	-0.00015239	0.032754	1.3388E-05	-0.34005	-0.000139	408.7630843407712	59.488	0.55631	60.235	60.047	60.603	0.74714					21	10	3	0	0	0	0.46048	1	22530	22530		46.021	0	1	2968400			23701	7084	17254	17372	23226	23226					0.09651874391192905
KAGISFII	8	Unmodified	_KAGISFII_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;ENST00000457594.2_7:74237150-74267816:-|nuORF;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2	nc|ENSG00000263001|P78347-2|GTF2I;ENSG00000196275|ENST00000451013|GTF2IRD2	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-SECPEP	A375_MHC_IP_R1	1	425.16571044921875	2	424.765646	847.516739	-0.14793	-6.2834E-05	0.23371	9.9274E-05	0.085786	3.6439E-05	424.76567750413653	89.671	0.55548	89.671	89.375	89.931	0					22	10	3	0	0	0	0.60242	1	32919	32919		37.974	5.6685	1	3901500			23702	9951;7876	17255	17373	23227	23227					0.08688178253805745
KAGISFII	8	Unmodified	_KAGISFII_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;ENST00000457594.2_7:74237150-74267816:-|nuORF;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2	nc|ENSG00000263001|P78347-2|GTF2I;ENSG00000196275|ENST00000451013|GTF2IRD2	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	A375_MHC_IP_R2	2	425.1656188964844	2	424.765646	847.516739	-0.092626	-3.9344E-05	-0.039044	-1.6584E-05	-0.13167	-5.5929E-05	424.7655578605575	88.615	0.55775	89.347	89.026	89.584	0.7318					22	10	3	0	0	0	0.36021	1	33704	33704		54.774	3.9185	1	4676700			23703	9951;7876	17255	17373	23228	23228					0.08688178253805745
KAGQVVTIW	9	Unmodified	_KAGQVVTIW_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-SECPEP	A375_MHC_IP_R1	1	501.692138671875	2	501.292559	1000.57057	-0.49878	-0.00025004	0.27369	0.0001372	-0.22509	-0.00011284	501.2927080288039	68.523	2.13	68.523	67.904	70.034	0					106	41	4	0	0	0	0.064992	1	24992	24992		58.679	0	1	325710000			23704	6442	17256	17374	23229	23229					0.07030350685522535
KAGQVVTIW	9	Unmodified	_KAGQVVTIW_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-SECPEP	A375_MHC_IP_R2	2	501.6609802246094	2	501.292559	1000.57057	-0.57803	-0.00028976	-0.15982	-8.0119E-05	-0.73786	-0.00036988	501.2924966314943	67.546	2.1834	68.282	67.648	69.831	0.73631					92	42	4	0	0	0	0.064992	1	25553	25553		68.081	25.986	1	366330000			23705	6442	17256	17374	23230	23230					0.07030350685522535
KAGRDERYLDL	11	Unmodified	_KAGRDERYLDL_					0	0	0			REV__nc|ENSG00000164944|Q69YN4-4|VIRMA	REV__nc|ENSG00000164944|Q69YN4-4|VIRMA	MULTI-MSMS	A375_MHC_IP_R2	2	445.9613342285156	3	445.905364	1334.69426	-0.707	-0.00031525	-1.2462	-0.00055568	-1.9532	-0.00087093	446.23906793558945	21.258	0.40393	21.877	21.575	21.979	0.61932					11	7	2	0	0	0	0.73502	1	6661	6661		4.1166	0	1	2144800	+		23706	20532	17257	17375	23231	23231					0.04030356995190232
KAGRSLHG	8	Unmodified	_KAGRSLHG_					0	0	0		ENSG00000167992|ENST00000335613|VWCE	ENSG00000167992|ENST00000335613|VWCE	ENSG00000167992|ENST00000335613|VWCE	MULTI-MSMS	A375_MHC_IP_R1	1	413.6380920410156	2	413.238119	824.461684	0.30234	0.00012494	-0.066324	-2.7407E-05	0.23602	9.7531E-05	413.2380142838922	102.03	4.6644	102.03	99.825	104.49	0					178	91	3	0	0	0	0.77797	1	37511	37511		2.3027	0	1	8600500			23707	7248	17258	17376	23232	23232					0.04243184505901354
KAGWGSGG	8	Unmodified	_KAGWGSGG_					0	0	0			REV__ENST00000482449.2_1_2:46770673-46770925:+|nuORF	REV__ENST00000482449.2_1_2:46770673-46770925:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	360.57684326171875	2	360.177195	718.339838	-0.5482	-0.00019745	0.36507	0.00013149	-0.18313	-6.5959E-05	360.1771144982693	34.211	0.30527	34.963	34.803	35.108	0.75225					8	5	2	0	0	0	0.972	1	12365	12365		2.5775	0	1	3031000	+		23708	25281	17259	17377	23233	23233					-0.030598575764656744
KAHHQFHRYNW	11	Unmodified	_KAHHQFHRYNW_					0	0	0			REV__FADS2|p.H215Y|1|0.47|ENSG00000134824|chr11:61848183-61848183|C/T|missense_variant	REV__FADS2|p.H215Y|1|0.47|ENSG00000134824|chr11:61848183-61848183|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	508.67999267578125	3	508.584959	1522.73305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.338	1	48.099	47.599	48.599	0.76128								0	0	0	0.16309	1	17748	17748		2.6312	0.19645	1		+		23709	26602	17260	17378	23234	23234					-0.007408728597738445
KAHHVKHHF	9	Unmodified	_KAHHVKHHF_					0	0	0		ENST00000562145.1_1_16:74748090-74750623:-|nuORF;nc|ENSG00000103089|Q7L5A8-2|FA2H;ENSG00000103089|ENST00000219368|FA2H	ENST00000562145.1_1_16:74748090-74750623:-|nuORF	ENST00000562145.1_1_16:74748090-74750623:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	382.2727966308594	3	380.877303	1139.61008	-0.056935	-2.1685E-05	-0.41708	-0.00015885	-0.47401	-0.00018054	380.8763970079249	31.091	0.7645	31.81	31.467	32.231	0.71857					47	14	5	0	0	0	0.63811	1	10992	10992		8.1555	1.5252	1	22867000			23710	2420	17261	17379	23235	23235					0.045859154796062285
KAIADRGWRF	10	Unmodified	_KAIADRGWRF_					0	0	0		ENSG00000148154|ENST00000374279|UGCG	ENSG00000148154|ENST00000374279|UGCG	ENSG00000148154|ENST00000374279|UGCG	MULTI-MSMS	A375_MHC_IP_R1	1	407.6280822753906	3	407.228001	1218.66217	-0.45733	-0.00018624	0.70589	0.00028746	0.24856	0.00010122	407.22825651328503	37.972	0.60944	37.972	37.71	38.319	0					25	11	3	0	0	0	0.091534	1	12829	12829		57.204	57.204	1	18383000			23711	5717	17262	17380	23236	23236					0.06159034102688565
KAIADRGWRF	10	Unmodified	_KAIADRGWRF_					0	0	0		ENSG00000148154|ENST00000374279|UGCG	ENSG00000148154|ENST00000374279|UGCG	ENSG00000148154|ENST00000374279|UGCG	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	407.228001	1218.66217	-0.64188	-0.00026139	0.74965	0.00030528	0.10777	4.3887E-05	407.562626340606	37.001	0.60773	37.771	37.513	38.12	0.7709	-0.10031	2.5349E-05	NaN	57.204	29	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16926000			23712	5717	17262	17380							0.06159034102688565
KAIALATL	8	Unmodified	_KAIALATL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;EXT2|p.D431Afs*5|1|0.05|ENSG00000151348|chr11:44171729-44171729|A/-|frameshift_variant;ENST00000534048.1_1_11:44151622-44219579:+|nuORF;ENST00000531161.5_1_11:44146432-44228372:+|nuORF;ENST00000525559.1_1_11:44148473-44193310:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-SECPEP	A375_MHC_IP_R1	1	401.16552734375	2	400.765646	799.516739	-0.32732	-0.00013118	0.36711	0.00014713	0.03979	1.5946E-05	400.76574119576117	61.05	0.45823	61.05	60.821	61.279	0					14	8	2	0	0	0	0.81376	1	22049	22049		25.399	0	1	1705200			23713	5898	17263	17381	23237	23237					0.10896178253813105
KAIATTVTY	9	Unmodified	_KAIATTVTY_					0	0	0		ENST00000447566.5_1_22:41166840-41215302:-|nuORF;ENSG00000100372|ENST00000435456|SLC25A17	ENST00000447566.5_1_22:41166840-41215302:-|nuORF	ENST00000447566.5_1_22:41166840-41215302:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	484.6763000488281	2	484.276575	966.538597	-0.82946	-0.00040169	0.17147	8.3037E-05	-0.65799	-0.00031865	484.27666458013323	35.22	0.6057	35.983	35.677	36.283	0.76338					35	11	5	0	0	0	0.087712	1	12752	12752		75.761	17.082	1	11007000			23714	2169	17264	17382	23238	23238					0.053989382117038076
KAIDYIRFL	9	Unmodified	_KAIDYIRFL_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1;ENST00000470247.1_1_17:17721556-17722545:-|nuORF;ENST00000469356.3_1_17:17720899-17721766:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	A375_MHC_IP_R1	1	380.9596862792969	3	380.225486	1137.65463	0.21018	7.9914E-05	0.28144	0.00010701	0.49162	0.00018693	380.22555986225206	90.155	0.70857	90.155	89.83	90.539	0					40	13	4	0	0	0	0.015356	1	33082	33082		81.915	36.175	1	9041900			23715	1535	17265	17383	23239	23239					0.09130881782425604
KAIDYIRFL	9	Unmodified	_KAIDYIRFL_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1;ENST00000470247.1_1_17:17721556-17722545:-|nuORF;ENST00000469356.3_1_17:17720899-17721766:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	A375_MHC_IP_R2	2	380.62554931640625	3	380.225486	1137.65463	0.10254	3.8987E-05	0.1431	5.4409E-05	0.24563	9.3396E-05	380.22549538386966	89.28	0.60336	90.012	89.735	90.339	0.7318					39	11	4	0	0	0	0.2487	1	33945	33945		32.037	21.887	1	9847200			23716	1535	17265	17383	23240	23240					0.09130881782425604
KAIDYIRFL	9	Unmodified	_KAIDYIRFL_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1;ENST00000470247.1_1_17:17721556-17722545:-|nuORF;ENST00000469356.3_1_17:17720899-17721766:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	MULTI-SECPEP	A375_MHC_IP_R2	2	569.6923828125	2	569.834591	1137.65463	-0.23541	-0.00013414	-0.51891	-0.00029569	-0.75432	-0.00042984	569.8344883866374	89.331	1.4207	90.062	89.635	91.056	0.7318					89	27	5	0	0	0	0.0037789	1	33946	33946		168.54	112.36	1	35145000			23717	1535	17265	17383	23241	23241					0.09130881782425604
KAIDYIRFL	9	Unmodified	_KAIDYIRFL_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1;ENST00000470247.1_1_17:17721556-17722545:-|nuORF;ENST00000469356.3_1_17:17720899-17721766:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	569.834591	1137.65463	-0.4424	-0.0002521	-0.025547	-1.4558E-05	-0.46795	-0.00026666	569.8347211388157	90.161	1.4691	90.161	89.73	91.199	0	0.049516	0.00021735	NaN	168.54	87	28	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38926000			23718	1535	17265	17383							0.09130881782425604
KAIEEGVNHMW	11	Unmodified	_KAIEEGVNHMW_					0	0	0		nc|ENSG00000113552|P46926-2|GNPDA1;ENSG00000113552|ENST00000311337|GNPDA1;ENST00000511187.1_1_4:44709760-44728589:-|nuORF;nc|ENSG00000163281|Q8TDQ7-4|GNPDA2;nc|ENSG00000163281|Q8TDQ7-5|GNPDA2;nc|ENSG00000163281|Q8TDQ7-3|GNPDA2;ENSG00000163281|ENST00000295448|GNPDA2	nc|ENSG00000113552|P46926-2|GNPDA1	nc|ENSG00000113552|P46926-2|GNPDA1	MULTI-SECPEP	A375_MHC_IP_R2	2	438.1318664550781	3	438.548412	1312.62341	-0.25022	-0.00010973	-0.10268	-4.5031E-05	-0.3529	-0.00015476	438.548086458442	44.254	0.35587	45.023	44.833	45.188	0.7691					12	6	3	0	0	0	0.90652	1	16527	16527		12.35	0	1	1276800			23719	3159	17266	17384	23242	23242					-0.020400593139811463
KAIEKNVLF	9	Unmodified	_KAIEKNVLF_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	A375_MHC_IP_R1	1	354.9498596191406	3	354.54997	1060.62808	0.13087	4.64E-05	-0.30806	-0.00010922	-0.17719	-6.2823E-05	354.5498089261888	42.612	0.55613	42.612	42.386	42.942	0					29	10	4	0	0	0	0.57432	1	14753	14753		11.518	1.7536	1	14618000			23720	2847	17267	17385	23243	23243					0.1001919289108173
KAIEKNVLF	9	Unmodified	_KAIEKNVLF_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-SECPEP	A375_MHC_IP_R1	1	530.7001342773438	2	531.321317	1060.62808	-0.43603	-0.00023167	-0.039468	-2.097E-05	-0.4755	-0.00025264	531.3212567660242	42.612	1.3186	42.612	42.032	43.351	0					72	25	5	0	0	0	0.011031	1	14777	14777		140.63	72.552	1	120280000			23721	2847	17267	17385	23244	23244					0.1001919289108173
KAIEKNVLF	9	Unmodified	_KAIEKNVLF_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	A375_MHC_IP_R2	2	354.9497985839844	3	354.54997	1060.62808	-0.28862	-0.00010233	-0.15216	-5.395E-05	-0.44078	-0.00015628	354.54987908862336	41.631	0.66223	42.406	42.149	42.811	0.77451					32	12	4	0	0	0	0.094655	1	15431	15431		40.725	18.067	1	16011000			23722	2847	17267	17385	23245	23245					0.1001919289108173
KAIEKNVLF	9	Unmodified	_KAIEKNVLF_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-SECPEP	A375_MHC_IP_R2	2	530.700439453125	2	531.321317	1060.62808	-0.72337	-0.00038434	-0.10118	-5.3757E-05	-0.82455	-0.0004381	531.3212240323155	41.653	1.2223	42.427	41.845	43.067	0.77451					63	23	5	0	0	0	0.010853	1	15473	15473		117.76	67.828	1	112640000			23723	2847	17267	17385	23246	23246					0.1001919289108173
KAIELLQEF	9	Unmodified	_KAIELLQEF_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;ENST00000344851.4_1_6:158659196-158659322:-|nuORF	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-SECPEP	A375_MHC_IP_R1	1	546.21044921875	2	545.810782	1089.60701	-0.66813	-0.00036467	0.36103	0.00019705	-0.3071	-0.00016762	545.8109103734726	95.07	1.1674	95.07	94.548	95.716	0					78	22	6	0	0	0	0.011308	1	34912	34912		117.76	44.793	1	57360000			23724	7900	17268	17386	23247	23247					0.06579182791574567
KAIELLQEF	9	Unmodified	_KAIELLQEF_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;ENST00000344851.4_1_6:158659196-158659322:-|nuORF	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-SECPEP	A375_MHC_IP_R2	2	546.2103271484375	2	545.810782	1089.60701	-0.60303	-0.00032914	0.33723	0.00018406	-0.2658	-0.00014508	545.8108998664082	94.125	1.5207	94.87	94.463	95.984	0.74474					82	29	5	0	0	0	0.016541	1	35732	35732		117.76	43.561	1	49577000			23725	7900	17268	17386	23248	23248					0.06579182791574567
KAIETQPNF	9	Unmodified	_KAIETQPNF_					0	0	0		nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-2|OGT;ENST00000488174.5_1_X:70767567-70775867:+|nuORF	nc|ENSG00000147162|O15294-3|OGT	nc|ENSG00000147162|O15294-3|OGT	MULTI-SECPEP	A375_MHC_IP_R1	1	524.677001953125	2	524.277106	1046.53966	-0.54137	-0.00028383	-0.27765	-0.00014557	-0.81903	-0.0004294	524.2771943410014	37.02	0.60651	37.02	36.745	37.351	0					38	11	5	0	0	0	0.011357	1	12413	12413		103.42	51.151	1	26059000			23726	5664	17269	17387	23249	23249					0.01825152580613576
KAIETQPNF	9	Unmodified	_KAIETQPNF_					0	0	0		nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-2|OGT;ENST00000488174.5_1_X:70767567-70775867:+|nuORF	nc|ENSG00000147162|O15294-3|OGT	nc|ENSG00000147162|O15294-3|OGT	MULTI-SECPEP	A375_MHC_IP_R2	2	524.6767578125	2	524.277106	1046.53966	-0.65486	-0.00034333	-0.62862	-0.00032957	-1.2835	-0.0006729	524.2770301628923	36.216	1.0181	36.987	36.749	37.767	0.7709					45	19	5	0	0	0	0.05217	1	13135	13135		79.596	27.328	1	34118000			23727	5664	17269	17387	23250	23250					0.01825152580613576
KAIGVPGPA	9	Unmodified	_KAIGVPGPA_					0	0	0		nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1	nc|ENSG00000116127|Q8TCU4-3|ALMS1	nc|ENSG00000116127|Q8TCU4-3|ALMS1	MULTI-MSMS	A375_MHC_IP_R2	2	405.6473083496094	2	405.247621	808.480688	-0.46809	-0.00018969	0.35102	0.00014225	-0.11707	-4.7444E-05	405.2476483213086	33.58	0.50536	34.332	34.146	34.651	0.75225					12	9	2	0	0	0	0.5339	1	12073	12073		18.135	1.1927	1	1924500			23728	3371	17270	17388	23251	23251					0.06878721076941474
KAIIENLIQK	10	Unmodified	_KAIIENLIQK_					0	0	0		nc|ENSG00000108582|O75976-2|CPD;ENSG00000108582|ENST00000225719|CPD	nc|ENSG00000108582|O75976-2|CPD	nc|ENSG00000108582|O75976-2|CPD	MULTI-SECPEP	A375_MHC_IP_R2	2	391.2919006347656	3	390.579929	1168.71796	-0.18716	-7.3099E-05	1.8651	0.00072848	1.678	0.00065538	390.91518849379577	27.799	0.20189	28.477	28.351	28.553	0.67857					5	3	2	0	0	0	0.92199	1	9519	9519		7.4771	0	1	1548900			23729	2817	17271	17389	23252	23252					0.1403482249966146
KAIKELEEW	9	Unmodified	_KAIKELEEW_					0	0	0		ENSG00000122705|ENST00000345519|CLTA;nc|ENSG00000122705|P09496-4|CLTA;nc|ENSG00000122705|P09496-3|CLTA;nc|ENSG00000122705|P09496|CLTA;nc|ENSG00000122705|P09496-5|CLTA	ENSG00000122705|ENST00000345519|CLTA	ENSG00000122705|ENST00000345519|CLTA	MULTI-SECPEP	A375_MHC_IP_R1	1	573.7134399414062	2	573.313689	1144.61282	-0.19134	-0.0001097	-0.31231	-0.00017905	-0.50366	-0.00028875	573.3135100295805	46.145	0.60503	46.145	45.89	46.495	0					23	11	3	0	0	0	0.041713	1	16170	16170		90.135	57.349	1	6377900			23730	3802	17272	17390	23253	23253					0.04630281303229822
KAIKELEEW	9	Unmodified	_KAIKELEEW_					0	0	0		ENSG00000122705|ENST00000345519|CLTA;nc|ENSG00000122705|P09496-4|CLTA;nc|ENSG00000122705|P09496-3|CLTA;nc|ENSG00000122705|P09496|CLTA;nc|ENSG00000122705|P09496-5|CLTA	ENSG00000122705|ENST00000345519|CLTA	ENSG00000122705|ENST00000345519|CLTA	MULTI-SECPEP	A375_MHC_IP_R2	2	573.7133178710938	2	573.313689	1144.61282	-0.31317	-0.00017955	-0.12692	-7.2765E-05	-0.44009	-0.00025231	573.3135443022768	45.245	0.55722	46.01	45.746	46.303	0.76519					23	10	3	0	0	0	0.011253	1	16889	16889		136.39	77.713	1	6848300			23731	3802	17272	17390	23254	23254					0.04630281303229822
KAIKRAQIMGF	11	Unmodified	_KAIKRAQIMGF_					0	0	0		ENST00000455300.1_1_X:53852417-53852804:+|nuORF;ENSG00000163319|ENST00000295491|MRPS18C	ENST00000455300.1_1_X:53852417-53852804:+|nuORF	ENST00000455300.1_1_X:53852417-53852804:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	420.9153747558594	3	421.584909	1261.7329	-0.40397	-0.00017031	-0.21934	-9.2471E-05	-0.62331	-0.00026278	421.5849999560173	23.524	0.2023	24.155	24.029	24.232	0.63014					6	3	2	0	0	0	0.99676	1	7574	7574		2.6312	2.558	1	1345300			23732	6647	17273	17391	23255	23255					0.11249991095996847
KAILLPDL	8	Unmodified	_KAILLPDL_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;ENST00000420969.1_1_2:162357792-162360000:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-SECPEP	A375_MHC_IP_R1	1	442.1859130859375	2	441.786579	881.558604	-0.1194	-5.2751E-05	-0.15139	-6.6884E-05	-0.2708	-0.00011963	441.7864187229713	91.649	0.40545	91.649	91.401	91.807	0					12	7	2	0	0	0	0.972	1	33683	33683		10.074	1.4806	1	1189000			23733	6016	17274	17392	23256	23256					0.11308733942325944
KAILLPDL	8	Unmodified	_KAILLPDL_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;ENST00000420969.1_1_2:162357792-162360000:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MATCH	A375_MHC_IP_R2	2		2	441.786579	881.558604	-0.23899	-0.00010558	0.11726	5.1804E-05	-0.12173	-5.3778E-05	441.7865716363316	90.532	0.40517	91.267	91.109	91.514	0.7345	-0.1909	0.00010599	NaN	36.127	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	835410			23734	6016	17274	17392							0.11308733942325944
KAINPINTF	9	Unmodified	_KAINPINTF_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000526423.1_1_11:46700589-46702208:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MSMS	A375_MHC_IP_R1	1	509.6897277832031	2	509.290017	1016.56548	-0.46023	-0.00023439	-0.12668	-6.4519E-05	-0.58691	-0.00029891	509.28994870798505	59.067	1.4236	59.067	58.633	60.057	0					83	27	6	0	0	0	0.012968	1	21395	21395		92.491	14.507	1	127880000			23735	7942	17275	17393	23257	23257					0.057860468229023354
KAINPINTF	9	Unmodified	_KAINPINTF_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000526423.1_1_11:46700589-46702208:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MSMS	A375_MHC_IP_R2	2	509.6892395019531	2	509.290017	1016.56548	-1.0304	-0.00052476	0.063266	3.2221E-05	-0.9671	-0.00049254	509.29002464387804	58.205	2.1276	58.954	58.427	60.554	0.74894					90	41	5	0	0	0	0.0094788	1	22161	22161		107.19	39.106	1	126250000			23736	7942	17275	17393	23258	23258					0.057860468229023354
KAIPRPDGIEW	11	Unmodified	_KAIPRPDGIEW_					0	0	0		nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	MULTI-SECPEP	A375_MHC_IP_R1	1	428.30328369140625	3	427.903183	1280.68772	-0.03552	-1.5199E-05	0.085868	3.6743E-05	0.050348	2.1544E-05	428.237545213679	56.727	0.50784	56.727	56.397	56.905	0					14	9	2	0	0	0	0.9881	1	20363	20363		5.1984	3.1145	1	2266200			23737	6826	17276	17394	23259	23259					0.05860463834460461
KAIPRPDGIEW	11	Unmodified	_KAIPRPDGIEW_					0	0	0		nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	MULTI-SECPEP	A375_MHC_IP_R2	2	428.3028259277344	3	427.903183	1280.68772	-0.34981	-0.00014969	-0.17157	-7.3414E-05	-0.52138	-0.0002231	428.2374151889442	55.893	0.3576	56.643	56.438	56.796	0.75014					12	6	2	0	0	0	0.90673	1	21128	21128		7.846	4.2534	1	2227400			23738	6826	17276	17394	23260	23260					0.05860463834460461
KAIQKAKEV	9	Unmodified	_KAIQKAKEV_					0	0	0		ENSG00000010322|ENST00000345716|NISCH;nc|ENSG00000010322|Q9Y2I1-4|NISCH;nc|ENSG00000010322|Q9Y2I1-3|NISCH;ENST00000489895.5_1_3:52512001-52514911:+|nuORF	ENSG00000010322|ENST00000345716|NISCH	ENSG00000010322|ENST00000345716|NISCH	MULTI-SECPEP	A375_MHC_IP_R1	1	508.2189636230469	2	507.818941	1013.62333	-0.46739	-0.00023735	0.68219	0.00034643	0.2148	0.00010908	507.8189247572337	58.484	0.4074	58.484	58.278	58.685	0					17	7	3	0	0	0	0.4261	1	21006	21006		18.146	0	1	2033400			23739	980	17277	17395	23261	23261					0.1170630874833023
KAISKNVLF	9	Unmodified	_KAISKNVLF_					0	0	0		ENSG00000188191|ENST00000537384|PRKAR1B	ENSG00000188191|ENST00000537384|PRKAR1B	ENSG00000188191|ENST00000537384|PRKAR1B	MULTI-SECPEP	A375_MHC_IP_R1	1	510.7156677246094	2	510.316035	1018.61752	-0.51377	-0.00026218	-0.36923	-0.00018843	-0.883	-0.00045061	510.31579027113423	40.938	0.40192	40.938	40.712	41.114	0					14	7	3	0	0	0	0.14554	1	14098	14098		57.249	26.613	1	2667300			23740	8891	17278	17396	23262	23262					0.10895210236674302
KAISPSEGW	9	Unmodified	_KAISPSEGW_					0	0	0		nc|ENSG00000108001|Q9H4W6-2|EBF3;nc|ENSG00000108001|Q9H4W6|EBF3;ENSG00000108001|ENST00000440978|EBF3;ENSG00000221818|ENST00000520164|EBF2;ENST00000519890.5_1_5:158126121-158500600:-|nuORF;ENST00000519739.5_1_5:158126121-158523319:-|nuORF;ENST00000522192.5_1_5:158126121-158523561:-|nuORF;nc|ENSG00000164330|Q9UH73-2|EBF1;ENST00000518836.5_1_5:158126121-158526593:-|nuORF;ENSG00000164330|ENST00000313708|EBF1	nc|ENSG00000108001|Q9H4W6-2|EBF3;ENST00000519890.5_1_5:158126121-158500600:-|nuORF	ENST00000519890.5_1_5:158126121-158500600:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	488.6510314941406	2	487.750724	973.486896	-0.62356	-0.00030414	0.24645	0.00012021	-0.3771	-0.00018393	487.7507962075936	39.678	0.81213	40.452	39.965	40.777	0.77451					37	15	3	0	0	0	0.066859	1	14655	14655		57.722	30.838	1	12037000			23741	2776;6827	17279	17397	23263	23263					-0.0009080548218207696
KAITFVTQY	9	Unmodified	_KAITFVTQY_					0	0	0		nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	nc|ENSG00000213782|Q9H0S4-2|DDX47	nc|ENSG00000213782|Q9H0S4-2|DDX47	MULTI-SECPEP	A375_MHC_IP_R1	1	536.197021484375	2	535.797675	1069.5808	-0.70345	-0.00037691	-0.1152	-6.1723E-05	-0.81864	-0.00043863	535.7976184621299	61.661	0.61274	61.661	61.382	61.994	0					26	11	3	0	0	0	0.05217	1	22229	22229		70.332	24.632	1	11755000			23742	9582	17280	17398	23264	23264					0.04878913620109415
KAITFVTQY	9	Unmodified	_KAITFVTQY_					0	0	0		nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	nc|ENSG00000213782|Q9H0S4-2|DDX47	nc|ENSG00000213782|Q9H0S4-2|DDX47	MULTI-SECPEP	A375_MHC_IP_R2	2	536.1972045898438	2	535.797675	1069.5808	-1.1401	-0.00061086	-0.13357	-7.1567E-05	-1.2737	-0.00068243	535.797583424319	60.847	0.50581	61.592	61.263	61.769	0.74503					17	9	2	0	0	0	0.048303	1	23030	23030		74.2	28.5	1	8210400			23743	9582	17280	17398	23265	23265					0.04878913620109415
KAITKKRKT	9	Unmodified	_KAITKKRKT_					0	0	0		ENSG00000183354|ENST00000399933|KIAA2026	ENSG00000183354|ENST00000399933|KIAA2026	ENSG00000183354|ENST00000399933|KIAA2026	MULTI-MSMS	A375_MHC_IP_R2	2	537.7607421875	2	537.361308	1072.70806	-0.68106	-0.00036598	0.19291	0.00010366	-0.48815	-0.00026231	537.3613788972428	147.41	0.32465	147.43	147.31	147.64	0.019913					64	38	3	0	0	0	0.77154	1	57306	57306		0.6015	0	1	264390			23744	8488	17281	17399	23266	23266					0.1746167928495197
KAITKRLPV	9	Unmodified	_KAITKRLPV_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	A375_MHC_IP_R2	2	513.163818359375	2	513.345126	1024.6757	-0.91956	-0.00047205	-2.4359	-0.0012505	-3.3555	-0.0017225	513.3437567587924	55.028	0.56004	55.779	55.269	55.83	0.75075					18	10	2	0	0	0	0.69504	1	20674	20674		4.3292	0	1	2161500	+		23745	21249	17282	17400	23267	23267					0.16434891881908698
KAITNIPVGF	10	Unmodified	_KAITNIPVGF_					0	0	0			REV__tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	REV__tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	530.7129516601562	2	530.313492	1058.61243	-0.49977	-0.00026503	-0.50855	-0.00026969	-1.0083	-0.00053472	530.3133660328546	87.136	0.80843	87.869	87.56	88.368	0.733					32	15	3	0	0	0	0.59108	1	33145	33145		21.537	1.0834	1	6782600	+		23746	28855	17283	17401	23268	23268					0.08546906374044738
KAIYDICRR	9	Unmodified	_KAIYDICRR_					0	0	0		TUBA3C|p.E207K|1|0.49|ENSG00000198033|chr13:19177364-19177364|C/T|missense_variant	TUBA3C|p.E207K|1|0.49|ENSG00000198033|chr13:19177364-19177364|C/T|missense_variant	TUBA3C|p.E207K|1|0.49|ENSG00000198033|chr13:19177364-19177364|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	569.6923828125	2	569.3135	1136.61245	-0.24435	-0.00013911	2.8348	0.0016139	2.5905	0.0014748	569.3149397624724	89.618	0.81297	90.35	89.886	90.699	0.7318					18	11	2	0	0	0	0.4261	1	33946	33946		37.974	10.345	1	1995200			23747	30098	17284	17402	23269	23269					0.049605831023882274
KAKANLIGW	9	Unmodified	_KAKANLIGW_					0	0	0		ENSG00000146247|ENST00000275034|PHIP;ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENSG00000146247|ENST00000275034|PHIP	ENSG00000146247|ENST00000275034|PHIP	MULTI-MSMS	A375_MHC_IP_R1	1	501.2003479003906	2	500.800552	999.58655	-0.33557	-0.00016805	-0.35092	-0.00017574	-0.68649	-0.00034379	500.8002923243696	46.134	0.40451	46.134	45.941	46.345	0					12	7	2	0	0	0	0.12592	1	16214	16214		46.021	9.8939	1	2165400			23748	5612	17285	17403	23270	23270					0.08674056922427553
KAKANLIGW	9	Unmodified	_KAKANLIGW_					0	0	0		ENSG00000146247|ENST00000275034|PHIP;ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENSG00000146247|ENST00000275034|PHIP	ENSG00000146247|ENST00000275034|PHIP	MULTI-SECPEP	A375_MHC_IP_R2	2	500.23388671875	2	500.800552	999.58655	-0.67704	-0.00033906	-0.59469	-0.00029782	-1.2717	-0.00063689	500.8003395372375	45.142	0.40598	45.908	45.643	46.049	0.76633					13	7	2	0	0	0	0.28475	1	16829	16829		39.957	5.8549	1	1949100			23749	5612	17285	17403	23271	23271					0.08674056922427553
KAKDLILRF	9	Unmodified	_KAKDLILRF_					0	0	0		ENST00000536093.5_3_12:27468169-27475385:+|nuORF;nc|ENSG00000211455|Q9Y2H1-2|STK38L;STK38|p.F382Lfs*70|1|0.2|ENSG00000112079|chr6:36497806-36497806|A/-|frameshift_variant;ENSG00000211455|ENST00000389032|STK38L;ENSG00000112079|ENST00000229812|STK38	ENST00000536093.5_3_12:27468169-27475385:+|nuORF	ENST00000536093.5_3_12:27468169-27475385:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	368.969482421875	3	368.569365	1102.68626	0.28016	0.00010326	0.051271	1.8897E-05	0.33143	0.00012216	368.56929281508013	50.655	0.45585	50.655	50.459	50.915	0					21	8	3	0	0	0	0.056914	2	17955	17955;17997		49.742	11.971	1	5757100			23750	3047	17286	17404	23272;23273	23272					0.1390287453637029
KAKDLILRF	9	Unmodified	_KAKDLILRF_					0	0	0		ENST00000536093.5_3_12:27468169-27475385:+|nuORF;nc|ENSG00000211455|Q9Y2H1-2|STK38L;STK38|p.F382Lfs*70|1|0.2|ENSG00000112079|chr6:36497806-36497806|A/-|frameshift_variant;ENSG00000211455|ENST00000389032|STK38L;ENSG00000112079|ENST00000229812|STK38	ENST00000536093.5_3_12:27468169-27475385:+|nuORF	ENST00000536093.5_3_12:27468169-27475385:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	368.9695739746094	3	368.569365	1102.68626	-0.063834	-2.3527E-05	0.077425	2.8536E-05	0.013591	5.0093E-06	368.56939049852195	49.515	0.55619	50.272	49.995	50.551	0.75737					22	10	3	0	0	0	0.056914	1	18601	18601		49.742	11.971	1	9080400			23751	3047	17286	17404	23274	23274					0.1390287453637029
KAKDLLALF	9	Unmodified	_KAKDLLALF_					0	0	0		ENSG00000089048|ENST00000617257|ESF1	ENSG00000089048|ENST00000617257|ESF1	ENSG00000089048|ENST00000617257|ESF1	MULTI-SECPEP	A375_MHC_IP_R1	1	510.2184143066406	2	509.81841	1017.62227	-0.57926	-0.00029532	0.26554	0.00013538	-0.31371	-0.00015994	509.81855059355576	90.144	0.5066	90.144	89.981	90.488	0					17	9	2	0	0	0	0.23894	1	33152	33152		40.239	2.0636	1	3065700			23752	1910	17287	17405	23275	23275					0.11416094379410424
KAKGTGGG	8	Unmodified	_KAKGTGGG_					0	0	0		ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	MULTI-SECPEP	A375_MHC_IP_R2	2	675.780029296875	1	675.378414	674.371138	-0.72962	-0.00049277	2.246	0.0015169	1.5164	0.0010241	675.3798146161524	107.66	0.91954	108.41	108	108.92	0.75436					26	17	2	0	0	0	0.972	1	40622	40622		2.5775	0	1	2694000			23753	1655	17288	17406	23276	23276					0.020927154576270368
KAKHKINL	8	Unmodified	_KAKHKINL_					0	0	0			REV__PPP1R3C|p.S60L|1|0.41|ENSG00000119938|chr10:91630702-91630702|G/A|missense_variant	REV__PPP1R3C|p.S60L|1|0.41|ENSG00000119938|chr10:91630702-91630702|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	476.7081604003906	2	476.308544	950.602535	-0.34107	-0.00016245	-0.25057	-0.00011935	-0.59164	-0.0002818	476.3082491240095	147.56	0.3318	147.58	147.48	147.81	0.019913					74	30	4	0	0	0	0.77839	1	57348	57348		0.79363	0	1	745120	+		23754	18105	17289	17407	23277	23277					0.12525763159305825
KAKHKINL	8	Unmodified	_KAKHKINL_					0	0	0			REV__PPP1R3C|p.S60L|1|0.41|ENSG00000119938|chr10:91630702-91630702|G/A|missense_variant	REV__PPP1R3C|p.S60L|1|0.41|ENSG00000119938|chr10:91630702-91630702|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	476.308544	950.602535	-0.88029	-0.00041929	0.25524	0.00012157	-0.62505	-0.00029772	476.30850962842464	147.55	0.34648	147.55	147.39	147.74	0	-0.012476	0.00020123	NaN	0.79363	77	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	788260	+		23755	18105	17289	17407							0.12525763159305825
KAKIGLIQF	9	Unmodified	_KAKIGLIQF_					0	0	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4;ENST00000461540.2_1_2:62096624-62104153:-|nuORF	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MULTI-SECPEP	A375_MHC_IP_R1	1	509.7260437011719	2	509.326402	1016.63825	-0.17142	-8.7308E-05	-0.2584	-0.00013161	-0.42982	-0.00021892	509.3262040838358	69.04	0.70991	69.04	68.717	69.427	0					34	13	4	0	0	0	0.037185	1	25010	25010		85.272	31.696	1	12202000			23756	3312	17290	17408	23278	23278					0.1305980061632681
KAKIGLIQF	9	Unmodified	_KAKIGLIQF_					0	0	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4;ENST00000461540.2_1_2:62096624-62104153:-|nuORF	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MULTI-SECPEP	A375_MHC_IP_R2	2	509.72613525390625	2	509.326402	1016.63825	-0.66143	-0.00033689	0.056758	2.8908E-05	-0.60467	-0.00030798	509.3263423761979	67.953	0.60979	68.688	68.409	69.018	0.73511					31	11	4	0	0	0	0.011145	1	25719	25719		96.111	42.535	1	11658000			23757	3312	17290	17408	23279	23279					0.1305980061632681
KAKILLVLFH	10	Unmodified	_KAKILLVLFH_					0	0	0		FSHR|p.S605F|1|0.38|ENSG00000170820|chr2:48963007-48963007|G/A|missense_variant;nc|ENSG00000170820|P23945-2|FSHR;nc|ENSG00000170820|P23945-3|FSHR;ENSG00000170820|ENST00000406846|FSHR;nc|ENSG00000170820|P23945-4|FSHR	FSHR|p.S605F|1|0.38|ENSG00000170820|chr2:48963007-48963007|G/A|missense_variant	FSHR|p.S605F|1|0.38|ENSG00000170820|chr2:48963007-48963007|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	591.3143920898438	2	591.392077	1180.7696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.98	1	117.98	117.48	118.48	0								0	0	0	0.15618	1	43378	43378		0.45834	0	1				23758	7543	17291	17409	23280	23280					0.18644610984188148
KAKKKEKEK	9	Unmodified	_KAKKKEKEK_					0	0	0		ENSG00000173692|ENST00000308696|PSMD1;nc|ENSG00000173692|Q99460-2|PSMD1	ENSG00000173692|ENST00000308696|PSMD1	ENSG00000173692|ENST00000308696|PSMD1	MULTI-MSMS	A375_MHC_IP_R1	1	372.91717529296875	3	372.908157	1115.70264	0.24739	9.2252E-05	-0.10753	-4.0098E-05	0.13986	5.2154E-05	372.9080643069663	33.197	1.1144	33.197	32.887	34.001	0					36	21	3	0	0	0	0.66474	1	10828	10828		10.151	0	1	30452000			23759	7821	17292	17410	23281	23281					0.14941955702465748
KAKKKEKEK	9	Unmodified	_KAKKKEKEK_					0	0	0		ENSG00000173692|ENST00000308696|PSMD1;nc|ENSG00000173692|Q99460-2|PSMD1	ENSG00000173692|ENST00000308696|PSMD1	ENSG00000173692|ENST00000308696|PSMD1	MULTI-MSMS	A375_MHC_IP_R2	2	373.3082275390625	3	372.908157	1115.70264	0.41418	0.00015445	-0.35367	-0.00013189	0.060515	2.2567E-05	372.9079877448104	32.078	1.0141	32.815	32.555	33.569	0.73691					44	19	4	0	0	0	0.60982	1	11358	11358		14.405	0	1	33286000			23760	7821	17292	17410	23282	23282					0.14941955702465748
KAKLQKKKE	9	Unmodified	_KAKLQKKKE_					0	0	0		ENST00000254109.9_1_16:31712056-31713112:+|nuORF	ENST00000254109.9_1_16:31712056-31713112:+|nuORF	ENST00000254109.9_1_16:31712056-31713112:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	551.2606201171875	2	550.861141	1099.70773	-0.59102	-0.00032557	-0.33705	-0.00018567	-0.92807	-0.00051124	550.8609290581243	147.32	0.1786	147.34	147.26	147.44	0.019897					44	22	3	0	0	0	0.8175	1	57290	57290		0.6015	0.14316	1	208390			23761	10222	17293	17411	23283	23283					0.1618625956507458
KAKRHEKF	8	Unmodified	_KAKRHEKF_					0	0	0			REV__ENSG00000138778|ENST00000265148|CENPE	REV__ENSG00000138778|ENST00000265148|CENPE	MULTI-SECPEP	A375_MHC_IP_R2	2	521.9649658203125	2	522.309075	1042.6036	-0.59395	-0.00031022	-0.7542	-0.00039393	-1.3481	-0.00070415	522.3083712131474	32.023	0.35302	32.76	32.504	32.857	0.73691					12	6	2	0	0	0	0.972	1	11285	11285		2.0598	1.6014	1	1776200	+		23762	19122	17294	17412	23284	23284					0.08399977528233649
KAKRHEKF	8	Unmodified	_KAKRHEKF_					0	0	0			REV__ENSG00000138778|ENST00000265148|CENPE	REV__ENSG00000138778|ENST00000265148|CENPE	MULTI-MATCH	A375_MHC_IP_R1	1		2	522.309075	1042.6036	-0.72746	-0.00037996	-0.76598	-0.00040008	-1.4934	-0.00078004	522.810489945301	32.807	0.3534	32.807	32.585	32.938	0	0.023358	-5.9838E-06	NaN	2.0598	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1562900	+		23763	19122	17294	17412							0.08399977528233649
KAKRPKALT	9	Unmodified	_KAKRPKALT_					0	0	0			REV__ENSG00000136383|ENST00000258888|ALPK3	REV__ENSG00000136383|ENST00000258888|ALPK3	MULTI-MSMS	A375_MHC_IP_R2	2	1013.0625	1	1012.66258	1011.6553	0.21343	0.00021613	-0.41825	-0.00042355	-0.20483	-0.00020742	1012.6619396934958	147.48	0.28455	147.5	147.41	147.7	0.019897					61	29	3	0	0	0	0.77154	1	57327	57327		0.6015	0	1	357760	+		23764	18935	17295	17413	23285	23285					0.1499372122210616
KAKRPKALT	9	Unmodified	_KAKRPKALT_					0	0	0			REV__ENSG00000136383|ENST00000258888|ALPK3	REV__ENSG00000136383|ENST00000258888|ALPK3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	1012.66258	1011.6553	-0.1644	-0.00016648	-0.41358	-0.00041882	-0.57798	-0.0005853	1012.6618904901576	147.47	0.24997	147.47	147.38	147.63	0	-0.016588	2.5145E-06	NaN	0.6015	54	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344740	+		23765	18935	17295	17413							0.1499372122210616
KAKTKRKAV	9	Unmodified	_KAKTKRKAV_					0	0	0			REV__nc|ENSG00000198363|Q12797-4|ASPH	REV__nc|ENSG00000198363|Q12797-4|ASPH	MULTI-MSMS	A375_MHC_IP_R1	1	515.7474365234375	2	515.3482	1028.68185	-0.88109	-0.00045407	-0.27845	-0.0001435	-1.1595	-0.00059757	515.3479798316755	147.49	0.27745	147.49	147.36	147.63	0					49	27	2	0	0	0	0.77154	1	56339	56339		0.6015	0	1	235350	+		23766	27446	17296	17414	23286	23286					0.16865410113450707
KAKTKRKAV	9	Unmodified	_KAKTKRKAV_					0	0	0			REV__nc|ENSG00000198363|Q12797-4|ASPH	REV__nc|ENSG00000198363|Q12797-4|ASPH	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	515.3482	1028.68185	-0.88109	-0.00045407	-0.27845	-0.0001435	-1.1595	-0.00059757	515.3479798316755	147.49	0.27745	147.49	147.36	147.63	0	-0.0090447	-0.00015285	NaN	0.6015	49	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235350	+		23767	27446	17296	17414							0.16865410113450707
KAKTKRKAV	9	Unmodified	_KAKTKRKAV_					0	0	0			REV__nc|ENSG00000198363|Q12797-4|ASPH	REV__nc|ENSG00000198363|Q12797-4|ASPH	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	515.3482	1028.68185	-0.57343	-0.00029552	-0.002396	-1.2348E-06	-0.57583	-0.00029675	515.3480171200785	147.49	0.29324	147.51	147.41	147.7	0.019897	0.0090447	0.00013168	NaN	0.6015	63	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154020	+		23768	27446	17296	17414							0.16865410113450707
KAKTNVKLW	9	Unmodified	_KAKTNVKLW_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	A375_MHC_IP_R1	1	363.62530517578125	3	363.225598	1086.65496	-0.13646	-4.9567E-05	-0.44708	-0.00016239	-0.58355	-0.00021196	363.2254030453393	26.57	0.90986	26.57	26.068	26.978	0					39	17	3	0	0	0	0.016157	1	7928	7928		88.364	54.142	1	25216000			23769	2847	17297	17415	23287	23287					0.11510301502289622
KAKTNVKLW	9	Unmodified	_KAKTNVKLW_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	A375_MHC_IP_R1	1	544.7343139648438	2	544.334759	1086.65496	-0.89075	-0.00048487	0.3615	0.00019678	-0.52926	-0.00028809	544.33460980331	26.575	0.35524	26.575	26.423	26.779	0					12	6	3	0	0	0	0.23949	1	7957	7957		43.982	11.196	1	3303200			23770	2847	17297	17415	23288	23288					0.11510301502289622
KAKTNVKLW	9	Unmodified	_KAKTNVKLW_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	A375_MHC_IP_R2	2	363.6253662109375	3	363.225598	1086.65496	-0.53347	-0.00019377	0.0022799	8.2811E-07	-0.53119	-0.00019294	363.2255664590331	25.688	0.66104	26.347	26.144	26.805	0.65992					34	12	3	0	0	0	0.20295	1	8611	8611		37.771	13.807	1	15595000			23771	2847	17297	17415	23289	23289					0.11510301502289622
KALCSCYV	8	Unmodified	_KALCSCYV_					0	0	0			REV__ENSG00000179846|ENST00000686631|NKPD1	REV__ENSG00000179846|ENST00000686631|NKPD1	MSMS	A375_MHC_IP_R1	1	443.6792907714844	2	443.711699	885.408845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.32	1	66.32	65.82	66.82	0								0	0	0	0.16876	1	24012	24012		23.148	6.2061	1		+		23772	21582	17298	17416	23290	23290					-0.038442776634383335
KALCSCYV	8	Unmodified	_KALCSCYV_					0	0	0			REV__ENSG00000179846|ENST00000686631|NKPD1	REV__ENSG00000179846|ENST00000686631|NKPD1	MSMS	A375_MHC_IP_R1	1	443.61236572265625	2	443.711699	885.408845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.436	1	66.436	65.936	66.936	0								0	0	0	0.16876	1	24058	24058		23.148	1.4018	1		+		23773	21582	17298	17416	23291	23291					-0.038442776634383335
KALDDKNCW	9	Unmodified	_KALDDKNCW_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	A375_MHC_IP_R1	1	547.16015625	2	546.760766	1091.50698	-0.88405	-0.00048336	-1.2737	-0.00069642	-2.1578	-0.0011798	546.7607375963539	29.956	0.4026	29.956	29.798	30.2	0					12	7	3	0	0	0	0.39434	1	9494	9494		24.991	7.8781	1	7073100			23774	3768	17299	17417	23292	23292					-0.035113778139020724
KALDDKNCW	9	Unmodified	_KALDDKNCW_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MATCH	A375_MHC_IP_R2	2		2	546.760766	1091.50698	-1.6602	-0.00090775	0.26889	0.00014702	-1.3913	-0.00076073	546.7607296949429	29.197	0.40465	29.896	29.78	30.185	0.69872	-0.029917	0.0005557	NaN	24.991	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2632200			23775	3768	17299	17417							-0.035113778139020724
KALDDLHKM	9	Unmodified	_KALDDLHKM_					0	0	0		ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-SECPEP	A375_MHC_IP_R1	1	357.9267883300781	3	357.526948	1069.55902	-0.0066428	-2.375E-06	-0.20181	-7.2151E-05	-0.20845	-7.4526E-05	357.5267565943012	24.777	0.40551	24.777	24.647	25.053	0					14	7	4	0	0	0	0.57304	1	7138	7138		13.519	0	1	10775000			23776	7586	17300	17418	23293	23293					0.02701785599856521
KALDLDDRW	9	Unmodified	_KALDLDDRW_					0	0	0		ENSG00000163322|ENST00000321945|ABRAXAS1;nc|ENSG00000163322|Q6UWZ7-2|ABRAXAS1	ENSG00000163322|ENST00000321945|ABRAXAS1	ENSG00000163322|ENST00000321945|ABRAXAS1	MULTI-SECPEP	A375_MHC_IP_R1	1	378.2646484375	3	377.864617	1130.57202	0.21586	8.1565E-05	2.0744	0.00078384	2.2903	0.00086541	377.8645965748409	52.697	0.55862	52.697	52.438	52.997	0					25	10	3	0	0	0	0.73926	1	18740	18740		12.856	9.5746	1	3373900			23777	6648	17301	17419	23294	23294					0.011959399835859585
KALDQFVNF	9	Unmodified	_KALDQFVNF_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-SECPEP	A375_MHC_IP_R2	2	541.686767578125	2	541.287474	1080.5604	-0.66273	-0.00035873	0.014974	8.1055E-06	-0.64775	-0.00035062	541.2874145479661	85.751	0.60944	86.487	86.137	86.746	0.73601					18	11	2	0	0	0	0.37663	1	32623	32623		23.79	5.6434	1	3555800			23778	2781	17302	17420	23295	23295					0.023337429602634074
KALDQFVNF	9	Unmodified	_KALDQFVNF_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MATCH	A375_MHC_IP_R1	1		2	541.287474	1080.5604	-0.80633	-0.00043646	0.25112	0.00013593	-0.55521	-0.00030053	541.2875574815804	86.584	0.45547	86.584	86.325	86.781	0	0.04829	3.5324E-05	NaN	41.956	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3428800			23779	2781	17302	17420							0.023337429602634074
KALDVMVSTF	10	Oxidation (M)	_KALDVM(Oxidation (M))VSTF_		KALDVM(1)VSTF		KALDVM(55)VSTF	0	0	1		ENST00000468373.1_1_1:153516388-153518231:-|nuORF;ENSG00000196154|ENST00000368716|S100A4	ENST00000468373.1_1_1:153516388-153518231:-|nuORF	ENST00000468373.1_1_1:153516388-153518231:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	564.1942749023438	2	563.794275	1125.574	-0.73367	-0.00041364	-0.52043	-0.00029342	-1.2541	-0.00070705	563.7942420570258	67.309	0.61344	67.309	66.887	67.5	0					17	11	2	0	0	0	0.40545	1	24368	24368		55.235	20.833	1	1868600			23780	9007	17303	17421	23296	23296		414			0.016232326772069428
KALDVMVSTF	10	Unmodified	_KALDVMVSTF_					0	0	0		ENST00000468373.1_1_1:153516388-153518231:-|nuORF;ENSG00000196154|ENST00000368716|S100A4	ENST00000468373.1_1_1:153516388-153518231:-|nuORF	ENST00000468373.1_1_1:153516388-153518231:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	556.1962280273438	2	555.796817	1109.57908	-0.6174	-0.00034315	2.3334	0.0012969	1.716	0.00095376	555.7980320458738	85.517	0.86597	86.253	85.626	86.492	0.73601					33	16	4	0	0	0	0.15413	1	32530	32530		76.825	26.892	1	3025400			23781	9007	17303	17422	23297	23297					0.028675365398157737
KALEELREF	9	Unmodified	_KALEELREF_					0	0	0		nc|ENSG00000166881|O14524-2|NEMP1;ENSG00000166881|ENST00000300128|NEMP1	nc|ENSG00000166881|O14524-2|NEMP1	nc|ENSG00000166881|O14524-2|NEMP1	MULTI-MSMS	A375_MHC_IP_R1	1	379.276611328125	3	378.876634	1133.60807	0.85447	0.00032374	-0.80004	-0.00030312	0.054426	2.0621E-05	378.8763505350905	49.038	0.70954	49.038	48.729	49.439	0					26	13	4	0	0	0	0.02114	1	17341	17341		75.571	36.956	1	3779700			23782	7124	17304	17423	23298	23298					0.04661397160452907
KALEELREF	9	Unmodified	_KALEELREF_					0	0	0		nc|ENSG00000166881|O14524-2|NEMP1;ENSG00000166881|ENST00000300128|NEMP1	nc|ENSG00000166881|O14524-2|NEMP1	nc|ENSG00000166881|O14524-2|NEMP1	MULTI-SECPEP	A375_MHC_IP_R1	1	568.2112426757812	2	567.811313	1133.60807	0.15194	8.6272E-05	-0.56459	-0.00032058	-0.41265	-0.00023431	567.8112102433763	49.159	0.86119	49.159	48.78	49.642	0					23	16	2	0	0	0	0.14438	1	17351	17351		59.052	21.978	1	4329900			23783	7124	17304	17423	23299	23299					0.04661397160452907
KALEELREF	9	Unmodified	_KALEELREF_					0	0	0		nc|ENSG00000166881|O14524-2|NEMP1;ENSG00000166881|ENST00000300128|NEMP1	nc|ENSG00000166881|O14524-2|NEMP1	nc|ENSG00000166881|O14524-2|NEMP1	MULTI-SECPEP	A375_MHC_IP_R2	2	379.276611328125	3	378.876634	1133.60807	0.1746	6.6154E-05	-0.60949	-0.00023092	-0.43489	-0.00016477	378.8765438440671	48.166	0.75541	48.926	48.681	49.436	0.75973					26	14	3	0	0	0	0.05217	1	18070	18070		73.196	17.962	1	4931300			23784	7124	17304	17423	23300	23300					0.04661397160452907
KALEELREF	9	Unmodified	_KALEELREF_					0	0	0		nc|ENSG00000166881|O14524-2|NEMP1;ENSG00000166881|ENST00000300128|NEMP1	nc|ENSG00000166881|O14524-2|NEMP1	nc|ENSG00000166881|O14524-2|NEMP1	MULTI-SECPEP	A375_MHC_IP_R2	2	568.2108154296875	2	567.811313	1133.60807	-0.29742	-0.00016888	-0.65289	-0.00037072	-0.95031	-0.00053959	567.8111949228695	48.096	0.85715	48.858	48.632	49.489	0.76128					24	16	2	0	0	0	0.11751	1	18076	18076		44.945	12.047	1	4928900			23785	7124	17304	17423	23301	23301					0.04661397160452907
KALEENNNF	9	Unmodified	_KALEENNNF_					0	0	0		nc|ENSG00000197457|Q9NZ72-2|STMN3;ENSG00000104435|ENST00000220876|STMN2;ENSG00000197457|ENST00000370053|STMN3;nc|ENSG00000104435|Q93045-2|STMN2	nc|ENSG00000197457|Q9NZ72-2|STMN3	nc|ENSG00000197457|Q9NZ72-2|STMN3	MULTI-MSMS	A375_MHC_IP_R1	1	540.161376953125	2	539.76182	1077.50909	-0.97406	-0.00052576	-0.95374	-0.00051479	-1.9278	-0.0010406	539.7616412178247	26.448	0.50664	26.448	26.322	26.828	0					14	9	2	0	0	0	0.035419	1	7918	7918		70.332	0	1	3782700			23786	2513	17305	17424	23302	23302					-0.02656625804434043
KALEIITDF	9	Unmodified	_KALEIITDF_					0	0	0		nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3;GTF3C3|p.N681Ifs*11|1|0.1|ENSG00000119041|chr2:196772943-196772943|T/-|frameshift_variant;ENSG00000119041|ENST00000263956|GTF3C3	nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3	nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3	MULTI-MSMS	A375_MHC_IP_R1	1	525.6966552734375	2	525.297507	1048.58046	-0.55432	-0.00029118	-1.5521	-0.00081534	-2.1065	-0.0011065	525.2971109897294	94.166	0.6581	94.166	93.89	94.548	0					20	12	3	0	0	0	0.10622	1	34642	34642		49.554	5.696	1	2156700			23787	3570	17306	17425	23303	23303					0.05811493900228015
KALELAHLKS	10	Unmodified	_KALELAHLKS_					0	0	0		ENSG00000023839|ENST00000647814|ABCC2	ENSG00000023839|ENST00000647814|ABCC2	ENSG00000023839|ENST00000647814|ABCC2	MULTI-SECPEP	A375_MHC_IP_R2	2	555.7366943359375	2	555.337498	1108.66044	-0.58388	-0.00032425	-3.8229	-0.002123	-4.4068	-0.0024473	555.8351897189293	142.83	0.76089	142.86	142.53	143.29	0.030731					19	14	2	0	0	0	0.94598	1	55862	55862		1.3295	0	1	5078800			23788	1080	17307	17426	23304	23304					0.11045980294079527
KALELERKL	9	Unmodified	_KALELERKL_					0	0	0		ENSG00000221963|ENST00000409652|APOL6	ENSG00000221963|ENST00000409652|APOL6	ENSG00000221963|ENST00000409652|APOL6	MULTI-MSMS	A375_MHC_IP_R1	1	367.6326599121094	3	367.232641	1098.67609	0.11269	4.1385E-05	-0.072538	-2.6638E-05	0.040155	1.4746E-05	367.23262008686737	27.688	0.4544	27.688	27.482	27.937	0					28	8	4	0	0	0	0.020264	1	8426	8426		83.278	0	1	10893000			23789	9675	17308	17427	23305	23305					0.1307026681113257
KALELERKL	9	Unmodified	_KALELERKL_					0	0	0		ENSG00000221963|ENST00000409652|APOL6	ENSG00000221963|ENST00000409652|APOL6	ENSG00000221963|ENST00000409652|APOL6	MULTI-MSMS	A375_MHC_IP_R2	2	367.6325378417969	3	367.232641	1098.67609	-0.021474	-7.8859E-06	0.24116	8.856E-05	0.21968	8.0674E-05	367.2327093332405	26.953	0.66521	27.613	27.363	28.028	0.65992					27	12	4	0	0	0	0.020264	1	9134	9134		83.278	3.8507	1	11796000			23790	9675	17308	17427	23306	23306					0.1307026681113257
KALELGAKY	9	Unmodified	_KALELGAKY_					0	0	0		ENSG00000073050|ENST00000262887|XRCC1;XRCC1|p.R350W|1|0.39|ENSG00000073050|chr19:43552051-43552051|G/A|missense_variant	ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	MULTI-SECPEP	A375_MHC_IP_R1	1	497.1920471191406	2	496.792392	991.570232	-0.46846	-0.00023273	0.013833	6.8719E-06	-0.45463	-0.00022585	496.79227863226237	31.153	0.50564	31.153	31.009	31.514	0					22	9	3	0	0	0	0.058501	1	9985	9985		61.09	26.158	1	3296000			23791	1556	17309	17428	23307	23307					0.07410930965670559
KALELGAKY	9	Unmodified	_KALELGAKY_					0	0	0		ENSG00000073050|ENST00000262887|XRCC1;XRCC1|p.R350W|1|0.39|ENSG00000073050|chr19:43552051-43552051|G/A|missense_variant	ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	MULTI-SECPEP	A375_MHC_IP_R2	2	496.1731262207031	2	496.792392	991.570232	-0.49502	-0.00024592	-0.48212	-0.00023951	-0.97714	-0.00048543	496.7921056740907	30.498	0.50556	31.217	30.911	31.417	0.71857					20	9	3	0	0	0	0.040539	1	10705	10705		73.196	29.338	1	3382800			23792	1556	17309	17428	23308	23308					0.07410930965670559
KALESIFKF	9	Unmodified	_KALESIFKF_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	MULTI-SECPEP	A375_MHC_IP_R1	1	542.2158203125	2	541.815867	1081.61718	-0.74088	-0.00040142	-0.51287	-0.00027788	-1.2537	-0.0006793	542.3165467128399	80.392	0.40471	80.392	80.187	80.592	0					14	7	3	0	0	0	0.53098	1	29373	29373		27.223	12.385	1	2857300			23793	5861	17310	17429	23309	23309					0.07963790516805602
KALESIFKF	9	Unmodified	_KALESIFKF_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	MULTI-SECPEP	A375_MHC_IP_R2	2	542.1375732421875	2	541.815867	1081.61718	-0.72294	-0.0003917	0.39259	0.00021271	-0.33035	-0.00017899	541.8161410498153	79.378	0.40418	80.123	79.946	80.35	0.74474					10	7	2	0	0	0	0.65527	1	30173	30173		8.1555	0	1	2802700			23794	5861	17310	17429	23310	23310					0.07963790516805602
KALEVFPEF	9	Unmodified	_KALEVFPEF_					0	0	0		nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-2|OGT	nc|ENSG00000147162|O15294-3|OGT	nc|ENSG00000147162|O15294-3|OGT	MULTI-MSMS	A375_MHC_IP_R1	1	540.6915893554688	2	540.292225	1078.5699	-0.64387	-0.00034788	-0.081106	-4.3821E-05	-0.72498	-0.0003917	540.2920746264072	99.292	0.60963	99.292	98.964	99.574	0					32	11	4	0	0	0	0.024574	2	36440	36440;36534		79.596	35.738	1	14613000			23795	5664	17311	17430	23311;23312	23311					0.03375511245803864
KALEVFPEF	9	Unmodified	_KALEVFPEF_					0	0	0		nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-2|OGT	nc|ENSG00000147162|O15294-3|OGT	nc|ENSG00000147162|O15294-3|OGT	MULTI-SECPEP	A375_MHC_IP_R2	2	540.6920776367188	2	540.292225	1078.5699	-0.82304	-0.00044468	0.30258	0.00016348	-0.52046	-0.0002812	540.292295580202	98.42	0.91627	99.18	98.487	99.403	0.75977					40	17	4	0	0	0	0.05217	1	37290	37290		79.596	35.738	1	14333000			23796	5664	17311	17430	23313	23313					0.03375511245803864
KALEWLARI	9	Unmodified	_KALEWLARI_					0	0	0		nc|ENSG00000211974|A0A0C4DH43|IGHV2-70D	nc|ENSG00000211974|A0A0C4DH43|IGHV2-70D	nc|ENSG00000211974|A0A0C4DH43|IGHV2-70D	MULTI-MSMS	A375_MHC_IP_R1	1	367.62567138671875	3	367.225598	1098.65496	0.070866	2.6024E-05	0.637	0.00023392	0.70786	0.00025995	367.2257019676839	24.289	0.70743	24.289	23.94	24.647	0					21	13	2	0	0	0	0.23226	1	6840	6840		35.612	35.612	1	6890800			23797	14891	17312	17431	23314	23314					0.10958301502273571
KALHKRAYR	9	Unmodified	_KALHKRAYR_					0	0	0			REV__PLA2G4D|p.E390K|1|0.47|ENSG00000159337|chr15:42079686-42079686|C/T|missense_variant	REV__PLA2G4D|p.E390K|1|0.47|ENSG00000159337|chr15:42079686-42079686|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	572.248046875	2	571.848899	1141.68324	-0.6225	-0.00035598	-0.79063	-0.00045212	-1.4131	-0.0008081	571.8482806884724	145.16	0.49402	145.16	144.87	145.36	0					28	17	2	0	0	0	0.81254	1	55644	55644		2.0598	0.98829	1	253030	+		23798	27792	17313	17432	23315	23315					0.11807044202214456
KALHKRAYR	9	Unmodified	_KALHKRAYR_					0	0	0			REV__PLA2G4D|p.E390K|1|0.47|ENSG00000159337|chr15:42079686-42079686|C/T|missense_variant	REV__PLA2G4D|p.E390K|1|0.47|ENSG00000159337|chr15:42079686-42079686|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	571.848899	1141.68324	-0.086462	-4.9443E-05	-1.1646	-0.00066599	-1.2511	-0.00071543	571.8479642818675	145.25	0.3049	145.28	145.15	145.45	0.021408	0.057893	-0.00019248	NaN	2.0598	25	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192880	+		23799	27792	17313	17432							0.11807044202214456
KALIKFKSYLY	11	Unmodified	_KALIKFKSYLY_					0	0	0		nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L	nc|ENSG00000129691|Q9UBL3-2|ASH2L	nc|ENSG00000129691|Q9UBL3-2|ASH2L	MULTI-MSMS	A375_MHC_IP_R2	2	688.2610473632812	2	687.413206	1372.81186	-0.47479	-0.00032638	-1.5098	-0.0010378	-1.9846	-0.0013642	687.9133979931779	143.54	0.24908	143.56	143.44	143.69	0.024414					6	4	2	0	0	0	0.7359	1	56065	56065		3.2813	1.4371	1	303420			23800	4208	17314	17433	23316	23316					0.14036541601944919
KALIYQKKY	9	Unmodified	_KALIYQKKY_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;ENST00000487258.5_1_7:91722364-91739470:+|nuORF;ENST00000486313.1_1_7:91731925-91739478:+|nuORF;nc|ENSG00000160299|O95613-2|PCNT;ENSG00000160299|ENST00000359568|PCNT	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	A375_MHC_IP_R1	1	385.96917724609375	3	385.569253	1153.68593	0.19163	7.3887E-05	0.19754	7.6164E-05	0.38917	0.00015005	385.56927343480965	19.757	0.50913	19.757	19.521	20.03	0					24	9	3	0	0	0	0.22013	1	4963	4963		36.506	24.331	1	4863500			23801	4108	17315	17434	23317	23317					0.11523454816529011
KALKELFEF	9	Unmodified	_KALKELFEF_					0	0	0		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	MULTI-SECPEP	A375_MHC_IP_R1	1	563.220947265625	2	562.82115	1123.62775	-0.4677	-0.00026323	0.098833	5.5625E-05	-0.36886	-0.0002076	562.8210251924985	81.324	0.70857	81.324	80.999	81.707	0					22	13	2	0	0	0	0.25548	1	29721	29721		61.602	25.096	1	3452000			23802	8710	17316	17435	23318	23318					0.07087773171224399
KALKKIRRKI	10	Unmodified	_KALKKIRRKI_					0	0	0		nc|ENSG00000182158|Q70SY1-2|CREB3L2;ENSG00000182158|ENST00000330387|CREB3L2;ENST00000330387.10_1_7:137590448-137590511:-|nuORF	nc|ENSG00000182158|Q70SY1-2|CREB3L2	nc|ENSG00000182158|Q70SY1-2|CREB3L2	MSMS	A375_MHC_IP_R2	2	627.4089965820312	2	627.448249	1252.88194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.449	1	85.185	84.685	85.685	0.73601								0	0	0	0.15591	1	32102	32102		1.6526	0.17072	1				23803	8380	17317	17436	23319	23319					0.2656188478106287
KALKKKKKI	9	Unmodified	_KALKKKKKI_					0	0	0		ENSG00000075856|ENST00000546815|SART3;nc|ENSG00000075856|Q15020-4|SART3	ENSG00000075856|ENST00000546815|SART3	ENSG00000075856|ENST00000546815|SART3	MSMS	A375_MHC_IP_R2	2	362.6172180175781	3	362.269138	1083.78558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.47	1	143.49	142.99	143.99	0.024414								0	0	0	0.15486	1	56067	56067		0	0	1				23804	1624	17318	17437	23320	23320					0.24704317221130623
KALKTLRRF	9	Unmodified	_KALKTLRRF_					0	0	0			REV__ENSG00000183914|ENST00000572933|DNAH2	REV__ENSG00000183914|ENST00000572933|DNAH2	MSMS	A375_MHC_IP_R1	1	378.2396240234375	3	378.248625	1131.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.869	1	54.869	54.369	55.369	0								0	0	0	0.15486	1	19608	19608		1.1933	0.32897	1		+		23805	21788	17319	17438	23321	23321					0.1634538552182221
KALKVTRLID	10	Unmodified	_KALKVTRLID_					0	0	0			REV__tr|U7T0G4|U7T0G4_FUSNUGlycine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glySPE=3SV=1	REV__tr|U7T0G4|U7T0G4_FUSNUGlycine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glySPE=3SV=1	MSMS	A375_MHC_IP_R2	2	386.28887939453125	3	386.251924	1155.73394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.063	1	65.801	65.301	66.301	0.73811								0	0	0	0.15531	1	24669	24669		1.7423	0	1		+		23806	28677	17320	17439	23322	23322					0.1623052873655979
KALLAKRKR	9	Unmodified	_KALLAKRKR_					0	0	0		ENSG00000139351|ENST00000392924|SYCP3	ENSG00000139351|ENST00000392924|SYCP3	ENSG00000139351|ENST00000392924|SYCP3	MSMS	A375_MHC_IP_R2	2	542.3660888671875	2	542.377292	1082.74003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.595	1	90.327	89.827	90.827	0.7318								0	0	0	0.15486	1	34093	34093		3.9444	1.8846	1				23807	5073	17321	17440	23323	23323					0.20197091758745955
KALLLQAV	8	Unmodified	_KALLLQAV_					0	0	0		ENSG00000158286|ENST00000377939|RNF207;nc|ENSG00000158286|Q6ZRF8-3|RNF207;ENST00000496676.5_1_1:6269476-6272097:+|nuORF;ENST00000485539.5_1_1:6269452-6270654:+|nuORF;nc|ENSG00000158286|Q6ZRF8-4|RNF207	ENSG00000158286|ENST00000377939|RNF207	ENSG00000158286|ENST00000377939|RNF207	MULTI-SECPEP	A375_MHC_IP_R1	1	427.702392578125	2	428.286746	854.558939	-0.13448	-5.7596E-05	0.18924	8.1049E-05	0.054762	2.3454E-05	428.2867913212196	63.949	0.55906	63.949	63.632	64.191	0					16	10	2	0	0	0	0.8211	1	23082	23082		38.151	0	1	1941800			23808	6298	17322	17441	23324	23324					0.12584153662180597
KALNIPEQLPQ	11	Unmodified	_KALNIPEQLPQ_					0	0	0		ENSG00000064601|ENST00000646241|CTSA;nc|ENSG00000064601|P10619-2|CTSA;ENST00000480961.1_1_20:44522693-44523773:+|nuORF	ENSG00000064601|ENST00000646241|CTSA	ENSG00000064601|ENST00000646241|CTSA	MULTI-SECPEP	A375_MHC_IP_R2	2	626.2583618164062	2	625.858795	1249.70304	-0.78846	-0.00049346	-0.17966	-0.00011244	-0.96811	-0.0006059	625.8587151439785	102.95	0.4586	103.71	103.48	103.94	0.76428					17	8	3	0	0	0	0.53535	1	39024	39024		47.594	1.8545	1	1733700			23809	1353	17323	17442	23325	23325					0.0881733063165484
KALNLIGKKF	10	Unmodified	_KALNLIGKKF_					0	0	0		ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	MULTI-MSMS	A375_MHC_IP_R1	1	378.64752197265625	3	377.913131	1130.71756	0.045588	1.7228E-05	-2.1215	-0.00080173	-2.0759	-0.0007845	377.91163736100907	38.183	0.96866	38.183	37.812	38.78	0					48	18	5	0	0	0	0.067551	1	12837	12837		70.929	44.908	1	57421000			23810	3703	17324	17443	23326	23326					0.15743447570480384
KALNLIGKKF	10	Unmodified	_KALNLIGKKF_					0	0	0		ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	MULTI-MSMS	A375_MHC_IP_R1	1	566.7657470703125	2	566.366059	1130.71756	-0.66813	-0.00037841	-0.075758	-4.2907E-05	-0.74389	-0.00042131	566.3657392168494	38.054	0.50745	38.054	37.812	38.319	0					19	9	3	0	0	0	0.054029	1	12897	12897		86.332	63.596	1	6053500			23811	3703	17324	17443	23327	23327					0.15743447570480384
KALNLIGKKF	10	Unmodified	_KALNLIGKKF_					0	0	0		ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	MULTI-MSMS	A375_MHC_IP_R2	2	377.64251708984375	3	377.913131	1130.71756	-0.49278	-0.00018623	-0.10146	-3.8342E-05	-0.59424	-0.00022457	377.9133771132985	36.964	0.76181	37.735	37.461	38.223	0.7709					34	14	5	0	0	0	0.0069514	2	13480	13471;13480		104.48	73.781	1	55038000			23812	3703	17324	17443	23328;23329	23329					0.15743447570480384
KALNLIGKKF	10	Unmodified	_KALNLIGKKF_					0	0	0		ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	MULTI-MSMS	A375_MHC_IP_R2	2	566.765869140625	2	566.366059	1130.71756	-1.0651	-0.00060321	0.84039	0.00047597	-0.22467	-0.00012725	566.3665083977506	36.971	0.30267	37.742	37.564	37.867	0.7709					12	5	3	0	0	0	0.014124	1	13520	13520		103.42	74.338	1	4372900			23813	3703	17324	17443	23330	23330					0.15743447570480384
KALPELIYY	9	Unmodified	_KALPELIYY_					0	0	0		ENSG00000198700|ENST00000361565|IPO9;IPO9|p.K900*|1|0.24|ENSG00000198700|chr1:201872947-201872948|-/T|frameshift_variant	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-SECPEP	A375_MHC_IP_R1	1	555.7153930664062	2	555.3157	1108.61685	-0.42583	-0.00023647	0.23501	0.0001305	-0.19083	-0.00010597	555.3157527718656	88.841	0.55879	88.841	88.561	89.12	0					27	10	3	0	0	0	0.27742	1	32610	32610		43.772	16.889	1	7971100			23814	9302	17325	17444	23331	23331					0.06688370796950949
KALPELIYY	9	Unmodified	_KALPELIYY_					0	0	0		ENSG00000198700|ENST00000361565|IPO9;IPO9|p.K900*|1|0.24|ENSG00000198700|chr1:201872947-201872948|-/T|frameshift_variant	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-SECPEP	A375_MHC_IP_R2	2	555.7152709960938	2	555.3157	1108.61685	-0.7062	-0.00039217	-0.19699	-0.00010939	-0.90319	-0.00050156	555.3158944371329	88.016	1.0129	88.748	88.418	89.431	0.7318					34	19	3	0	0	0	0.24324	1	33469	33469		45.7	18.816	1	9493400			23815	9302	17325	17444	23332	23332					0.06688370796950949
KALPLKLIN	9	Unmodified	_KALPLKLIN_					0	0	0		nc|ENSG00000101639|Q8TEP8-2|CEP192;nc|ENSG00000101639|Q8TEP8-1|CEP192;ENSG00000101639|ENST00000506447|CEP192;ENST00000513432.5_1_18:13059017-13124766:+|nuORF	nc|ENSG00000101639|Q8TEP8-2|CEP192	nc|ENSG00000101639|Q8TEP8-2|CEP192	MULTI-SECPEP	A375_MHC_IP_R1	1	505.7419738769531	2	505.342052	1008.66955	-0.41643	-0.00021044	0.24217	0.00012238	-0.17426	-8.8059E-05	505.34213867458254	37.747	0.40787	37.747	37.556	37.964	0					12	7	2	0	0	0	0.53748	1	12774	12774		18.146	3.3081	1	2501200			23816	2316	17326	17445	23333	23333					0.16556373650405476
KALPLTKV	8	Unmodified	_KALPLTKV_					0	0	0		nc|ENSG00000100227|Q9BY77-2|POLDIP3;ENSG00000100227|ENST00000252115|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	MULTI-MSMS	A375_MHC_IP_R1	1	435.6944274902344	2	435.294571	868.574589	-0.40867	-0.00017789	0.35508	0.00015456	-0.053586	-2.3326E-05	435.2946767309285	30.86	0.40623	30.86	30.703	31.109	0					14	7	3	0	0	0	0.43631	1	9868	9868		51.63	9.7902	1	1545000			23817	2139	17327	17446	23334	23334					0.13504440179224275
KALPLTKV	8	Unmodified	_KALPLTKV_					0	0	0		nc|ENSG00000100227|Q9BY77-2|POLDIP3;ENSG00000100227|ENST00000252115|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	MULTI-MATCH	A375_MHC_IP_R2	2		2	435.294571	868.574589	-0.61944	-0.00026964	0.13572	5.9077E-05	-0.48372	-0.00021056	435.29449718512814	29.884	0.30448	30.583	30.485	30.79	0.69872	-0.13835	-0.00016126	NaN	51.63	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1574900			23818	2139	17327	17446							0.13504440179224275
KALQETHQ	8	Unmodified	_KALQETHQ_					0	0	0		ENSG00000133020|ENST00000403437|MYH8	ENSG00000133020|ENST00000403437|MYH8	ENSG00000133020|ENST00000403437|MYH8	MSMS	A375_MHC_IP_R1	1	477.6923522949219	2	477.753798	953.493044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.29	1	28.29	27.79	28.79	0								0	0	0	0.16876	1	8707	8707		8.5933	0	1				23819	4473	17328	17447	23335	23335					0.014437127493238222
KALQFLEEV	9	Unmodified	_KALQFLEEV_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;CCT6A|p.L444Ffs*16|1|0.27|ENSG00000146731|chr7:56060920-56060921|-/CATT|frameshift_variant	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	A375_MHC_IP_R1	1	539.2025756835938	2	538.802957	1075.59136	-0.73662	-0.00039689	0.06167	3.3228E-05	-0.67495	-0.00036366	538.8027522880838	87.307	0.55965	87.307	87.034	87.593	0					26	10	3	0	0	0	0.0083527	1	32022	32022		144.35	40.602	1	3956300			23820	5633	17329	17448	23336	23336					0.05658896274530889
KALQFLEEV	9	Unmodified	_KALQFLEEV_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;CCT6A|p.L444Ffs*16|1|0.27|ENSG00000146731|chr7:56060920-56060921|-/CATT|frameshift_variant	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	A375_MHC_IP_R2	2	539.2025756835938	2	538.802957	1075.59136	-0.7082	-0.00038158	0.64043	0.00034507	-0.06777	-3.6514E-05	538.8035694639271	86.386	0.86652	87.119	86.592	87.458	0.73301					29	16	3	0	0	0	0.0098859	1	32842	32842		131.27	38.776	1	4221500			23821	5633	17329	17448	23337	23337					0.05658896274530889
KALQVMTDF	9	Unmodified	_KALQVMTDF_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000472057.1_1_22:29727525-29736761:-|nuORF	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-SECPEP	A375_MHC_IP_R1	1	527.1747436523438	2	526.775885	1051.53722	-0.29819	-0.00015708	-0.90485	-0.00047665	-1.203	-0.00063373	526.7754555314109	71.573	0.35061	71.573	71.364	71.715	0					10	6	2	0	0	0	0.090157	1	26035	26035		76.825	44.519	1	3310800			23822	2149	17330	17449	23338	23338					0.013509808512935706
KALQVMTDF	9	Unmodified	_KALQVMTDF_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000472057.1_1_22:29727525-29736761:-|nuORF	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	A375_MHC_IP_R2	2	527.1754150390625	2	526.775885	1051.53722	-0.48097	-0.00025336	-0.24954	-0.00013145	-0.73051	-0.00038481	526.7756322063289	70.689	0.40536	71.423	71.2	71.605	0.73421					10	7	2	0	0	0	0.02559	1	26835	26835		78.728	32.707	1	3505300			23823	2149	17330	17449	23339	23339					0.013509808512935706
KALQVMTDF	9	Oxidation (M)	_KALQVM(Oxidation (M))TDF_		KALQVM(1)TDF		KALQVM(60)TDF	0	0	1		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000472057.1_1_22:29727525-29736761:-|nuORF	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-SECPEP	A375_MHC_IP_R2	2	535.1732788085938	2	534.773342	1067.53213	-0.94291	-0.00050424	0.69448	0.00037139	-0.24843	-0.00013285	534.7736379472461	50.569	0.7599	51.323	50.955	51.715	0.75406					20	14	3	0	0	0	0.070665	1	19003	19003		60.074	30.992	1	2768400			23824	2149	17330	17450	23340	23340		82			0.0010667698868473963
KALRGRPP	8	Unmodified	_KALRGRPP_					0	0	0		ENST00000301072.10_1_12:49658815-49658959:+|nuORF	ENST00000301072.10_1_12:49658815-49658959:+|nuORF	ENST00000301072.10_1_12:49658815-49658959:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	894.9635009765625	1	894.563195	893.555919	-0.55278	-0.0004945	0.35439	0.00031702	-0.19839	-0.00017748	894.5632833242709	143.81	0.25206	143.81	143.68	143.94	0					6	4	2	0	0	0	0.77842	1	55193	55193		0.69038	0	1	2811400			23825	10542	17331	17451	23341	23341					0.10488323328036131
KALRGRPP	8	Unmodified	_KALRGRPP_					0	0	0		ENST00000301072.10_1_12:49658815-49658959:+|nuORF	ENST00000301072.10_1_12:49658815-49658959:+|nuORF	ENST00000301072.10_1_12:49658815-49658959:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	894.563195	893.555919	-0.26319	-0.00023544	-0.38306	-0.00034267	-0.64625	-0.00057811	894.5625534110496	143.84	0.19983	143.87	143.74	143.94	0.024414	0.027307	-0.00013545	NaN	0.69038	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3864300			23826	10542	17331	17451							0.10488323328036131
KALRLSASA	9	Unmodified	_KALRLSASA_					0	0	0		ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	MULTI-SECPEP	A375_MHC_IP_R1	1	459.18231201171875	2	458.782359	915.550165	-0.55083	-0.00025271	0.35321	0.00016205	-0.19761	-9.0661E-05	458.78243578749084	23.542	0.25457	23.542	23.381	23.635	0					9	4	3	0	0	0	0.048303	1	6497	6497		83.429	31.799	1	8317900			23827	4145	17332	17452	23342	23342					0.08901180025713984
KALRLSASALF	11	Unmodified	_KALRLSASALF_					0	0	0		ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	MULTI-MSMS	A375_MHC_IP_R1	1	393.3078918457031	3	392.908157	1175.70264	0.23162	9.1005E-05	-0.087026	-3.4193E-05	0.14459	5.6812E-05	392.90814898519915	71.195	4.5122	71.195	70.8	75.312	0					219	88	5	0	0	0	0.46809	1	26019	26019		33.632	7.6347	1	222660000			23828	4145	17333	17453	23343	23343					0.12181955702453706
KALRLSASALF	11	Unmodified	_KALRLSASALF_					0	0	0		ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	MULTI-MSMS	A375_MHC_IP_R1	1	588.8742065429688	2	588.858598	1175.70264	-0.15421	-9.0809E-05	-0.095591	-5.629E-05	-0.2498	-0.0001471	588.8585099808333	71.185	1.8259	71.185	70.902	72.728	0					88	35	5	0	0	0	0.48226	1	26034	26034		39.213	6.4273	1	65791000			23829	4145	17333	17453	23344	23344					0.12181955702453706
KALRLSASALF	11	Unmodified	_KALRLSASALF_					0	0	0		ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	MULTI-SECPEP	A375_MHC_IP_R2	2	393.30810546875	3	392.908157	1175.70264	-0.14752	-5.7962E-05	-0.10335	-4.0606E-05	-0.25087	-9.8567E-05	392.90814206176526	70.223	2.6339	70.957	70.591	73.225	0.73421					143	51	4	0	0	0	0.03754	1	26568	26568		53.798	16.027	1	219070000			23830	4145	17333	17453	23345	23345					0.12181955702453706
KALRLSASALF	11	Unmodified	_KALRLSASALF_					0	0	0		ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	MULTI-SECPEP	A375_MHC_IP_R2	2	589.2584838867188	2	588.858598	1175.70264	-0.51882	-0.00030551	-0.12017	-7.0761E-05	-0.63899	-0.00037628	588.8584808457844	70.239	1.4689	70.973	70.642	72.111	0.73421					71	28	4	0	0	0	0.037235	1	26571	26571		98.73	42.553	1	63771000			23831	4145	17333	17453	23346	23346					0.12181955702453706
KALRVGFLD	9	Unmodified	_KALRVGFLD_					0	0	0		ENST00000592881.1_1_19:56146536-56146728:+|nuORF	ENST00000592881.1_1_19:56146536-56146728:+|nuORF	ENST00000592881.1_1_19:56146536-56146728:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	510.4513244628906	2	509.805834	1017.59712	-0.39875	-0.00020329	1.3032	0.00066439	0.90446	0.0004611	510.3079716965078	55.661	0.2556	55.661	55.431	55.687	0					7	4	2	0	0	0	0.69507	1	19896	19896		9.3831	0.63772	1	643530			23832	13817	17334	17454	23347	23347					0.08902039576844345
KALRVIVRI	9	Unmodified	_KALRVIVRI_					0	0	0		nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2;ENST00000486955.2_1_10:126686512-126691658:-|nuORF	nc|ENSG00000175029|P56545|CTBP2	nc|ENSG00000175029|P56545|CTBP2	MULTI-SECPEP	A375_MHC_IP_R2	2	356.9849548339844	3	356.585238	1066.73388	-0.29579	-0.00010548	0.039949	1.4245E-05	-0.25585	-9.1231E-05	356.5850688300326	41.601	0.40834	42.375	42.198	42.607	0.77451					10	7	2	0	0	0	0.75519	1	15479	15479		10.151	5.6217	1	2271700			23833	7924	17335	17455	23348	23348					0.20318573527219996
KALSMPEKW	9	Oxidation (M)	_KALSM(Oxidation (M))PEKW_		KALSM(1)PEKW		KALSM(53)PEKW	0	0	1		nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENSG00000100225|ENST00000266087|FBXO7;ENST00000492535.1_1_22:32875160-32883832:+|nuORF	nc|ENSG00000100225|Q9Y3I1-3|FBXO7	nc|ENSG00000100225|Q9Y3I1-3|FBXO7	MULTI-SECPEP	A375_MHC_IP_R1	1	553.688720703125	2	553.289159	1104.56377	-0.63726	-0.00035259	-0.24023	-0.00013292	-0.87749	-0.00048551	553.2889741940243	27.291	0.4048	27.291	27.078	27.482	0					16	7	3	0	0	0	0.21838	1	8270	8270		53.47	38.221	1	3996200			23834	2138	17336	17456	23349	23349		81			0.015666697426240717
KALSMPEKW	9	Unmodified	_KALSMPEKW_					0	0	0		nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENSG00000100225|ENST00000266087|FBXO7;ENST00000492535.1_1_22:32875160-32883832:+|nuORF	nc|ENSG00000100225|Q9Y3I1-3|FBXO7	nc|ENSG00000100225|Q9Y3I1-3|FBXO7	MULTI-SECPEP	A375_MHC_IP_R2	2	364.2633361816406	3	363.86356	1088.56885	-0.048126	-1.7511E-05	-0.27726	-0.00010089	-0.32539	-0.0001184	363.86341534076865	44.391	0.45599	45.161	44.934	45.39	0.76909					16	8	3	0	0	0	0.51395	1	16595	16595		23.801	23.801	1	3800800			23835	2138	17336	17457	23350	23350					0.0281097360525564
KALSMPEKW	9	Unmodified	_KALSMPEKW_					0	0	0		nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENSG00000100225|ENST00000266087|FBXO7;ENST00000492535.1_1_22:32875160-32883832:+|nuORF	nc|ENSG00000100225|Q9Y3I1-3|FBXO7	nc|ENSG00000100225|Q9Y3I1-3|FBXO7	MULTI-SECPEP	A375_MHC_IP_R2	2	545.6915893554688	2	545.291702	1088.56885	-0.80017	-0.00043632	-0.063336	-3.4537E-05	-0.8635	-0.00047086	545.2916681259428	44.397	0.81166	45.166	44.782	45.594	0.7691					41	15	4	0	0	0	0.051453	1	16551	16551		104.48	73.848	1	21093000			23836	2138	17336	17457	23351	23351					0.0281097360525564
KALSQPPGEE	10	Unmodified	_KALSQPPGEE_					0	0	0		chr10:80509471-80510106|138|17.84|0.79|4.49|+|0|TSPAN14,None|1	chr10:80509471-80510106|138|17.84|0.79|4.49|+|0|TSPAN14,None|1	chr10:80509471-80510106|138|17.84|0.79|4.49|+|0|TSPAN14,None|1	MSMS	A375_MHC_IP_R1	1	528.0543823242188	2	528.272021	1054.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.157	1	88.157	87.657	88.657	0								0	0	0	0.15089	1	32358	32358		16.149	2.2431	1				23837	399	17337	17458	23352	23352					0.0044054485538254085
KALSSLTSF	9	Unmodified	_KALSSLTSF_					0	0	0		nc|ENSG00000171291|Q8NDP4|ZNF439;ENSG00000171291|ENST00000682736|ZNF439;ENSG00000198429|ENST00000429654|ZNF69;ENSG00000171295|ENST00000304060|ZNF440	nc|ENSG00000171291|Q8NDP4|ZNF439	nc|ENSG00000171291|Q8NDP4|ZNF439	MULTI-MSMS	A375_MHC_IP_R2	2	477.6684265136719	2	477.26875	952.522947	-0.86051	-0.00041069	0.031024	1.4807E-05	-0.82949	-0.00039589	477.26875172764574	61.552	0.4526	62.297	62.121	62.573	0.74503					12	8	2	0	0	0	0.14858	1	23336	23336		41.956	2.0059	1	1936700			23838	7590	17338	17459	23353	23353					0.044786516946601296
KALTTKGS	8	Unmodified	_KALTTKGS_					0	0	0			REV__nc|ENSG00000106733|Q9NWW6-2|NMRK1	REV__nc|ENSG00000106733|Q9NWW6-2|NMRK1	MULTI-SECPEP	A375_MHC_IP_R2	2	403.64312744140625	2	403.242535	804.470518	0.20575	8.2967E-05	1.3639	0.00054997	1.5696	0.00063293	403.24300106626816	142.58	0.25638	142.61	142.48	142.74	0.030731					6	4	2	0	0	0	0.972	1	55750	55750		0	0	1	2954500	+		23839	17463	17339	17460	23354	23354					0.06046113351715121
KALTTKGS	8	Unmodified	_KALTTKGS_					0	0	0			REV__nc|ENSG00000106733|Q9NWW6-2|NMRK1	REV__nc|ENSG00000106733|Q9NWW6-2|NMRK1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	403.242535	804.470518	-0.76574	-0.00030878	2.1013	0.00084732	1.3355	0.00053854	403.24327836393553	142.51	0.25339	142.51	142.44	142.69	0	-0.049165	0.00032894	NaN	0	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3394100	+		23840	17463	17339	17460							0.06046113351715121
KAMDYDLLL	9	Unmodified	_KAMDYDLLL_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2;ENST00000483321.1_1_3:49166066-49166700:-|nuORF	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MULTI-MSMS	A375_MHC_IP_R1	1	541.6834716796875	2	541.283543	1080.55253	-0.58668	-0.00031756	0.42216	0.00022851	-0.16451	-8.9047E-05	541.2835926358957	96.452	0.50916	96.452	96.171	96.68	0					18	9	2	0	0	0	0.22013	1	35433	35433		36.506	2.4038	1	2907000			23841	7673	17340	17461	23355	23355					0.015478476484986459
KAMELIREL	9	Unmodified	_KAMELIREL_					0	0	0		ENSG00000101003|ENST00000262460|GINS1;ENST00000484893.1_1_20:25388456-25391762:+|nuORF	ENSG00000101003|ENST00000262460|GINS1	ENSG00000101003|ENST00000262460|GINS1	MULTI-SECPEP	A375_MHC_IP_R1	1	552.21826171875	2	551.818084	1101.62162	-0.53706	-0.00029636	0.56589	0.00031227	0.028832	1.591E-05	551.8182560450072	60.134	0.50908	60.134	59.905	60.414	0					19	9	3	0	0	0	0.50795	1	21651	21651		41.347	18.689	1	2917700			23842	2243	17341	17462	23356	23356					0.07486931668063335
KAMELIREL	9	Unmodified	_KAMELIREL_					0	0	0		ENSG00000101003|ENST00000262460|GINS1;ENST00000484893.1_1_20:25388456-25391762:+|nuORF	ENSG00000101003|ENST00000262460|GINS1	ENSG00000101003|ENST00000262460|GINS1	MULTI-SECPEP	A375_MHC_IP_R2	2	552.2172241210938	2	551.818084	1101.62162	-1.1747	-0.00064822	-0.27819	-0.00015351	-1.4529	-0.00080173	551.8178808605825	59.117	0.50734	59.864	59.489	59.996	0.74714					18	9	3	0	0	0	0.54807	1	22360	22360		38.559	38.559	1	3045700			23843	2243	17341	17462	23357	23357					0.07486931668063335
KAMGIMNSF	9	Unmodified	_KAMGIMNSF_					0	0	0		nc|ENSG00000261716|Q6DN03|H2BC20P;ENSG00000273802|ENST00000541790|H2BC8;nc|ENSG00000220323|Q6DRA6|H2BC19P;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000276410|ENST00000615966|H2BC3;ENST00000465850.1_1_3:113822098-113822344:-|nuORF;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000274641|ENST00000616182|H2BC17;ENST00000369385.5_1_1:149814728-149815097:+|nuORF;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000234289|ENST00000599962|H2BC12L;ENST00000436555.1_1_1:228651947-228652295:-|nuORF;HIST1H2BJ|p.S57F|1|0.4|ENSG00000124635|chr6:27132581-27132581|G/A|missense_variant	nc|ENSG00000261716|Q6DN03|H2BC20P	nc|ENSG00000261716|Q6DN03|H2BC20P	MULTI-MSMS	A375_MHC_IP_R1	1	499.64691162109375	2	499.743531	997.472508	-0.729	-0.00036431	0.44702	0.0002234	-0.28198	-0.00014092	499.7436880182059	67.555	0.8112	67.555	67.297	68.108	0					25	15	3	0	0	0	0.13797	1	24426	24426		43.858	7.7313	1	5742800			23844	3919	17342	17463	23358	23358					-0.02632917226344489
KAMGIMNSF	9	Unmodified	_KAMGIMNSF_					0	0	0		nc|ENSG00000261716|Q6DN03|H2BC20P;ENSG00000273802|ENST00000541790|H2BC8;nc|ENSG00000220323|Q6DRA6|H2BC19P;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000276410|ENST00000615966|H2BC3;ENST00000465850.1_1_3:113822098-113822344:-|nuORF;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000274641|ENST00000616182|H2BC17;ENST00000369385.5_1_1:149814728-149815097:+|nuORF;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000234289|ENST00000599962|H2BC12L;ENST00000436555.1_1_1:228651947-228652295:-|nuORF;HIST1H2BJ|p.S57F|1|0.4|ENSG00000124635|chr6:27132581-27132581|G/A|missense_variant	nc|ENSG00000261716|Q6DN03|H2BC20P	nc|ENSG00000261716|Q6DN03|H2BC20P	MULTI-SECPEP	A375_MHC_IP_R2	2	500.14288330078125	2	499.743531	997.472508	-0.67433	-0.00033699	0.41919	0.00020949	-0.25514	-0.0001275	499.7438089125964	66.58	0.61241	67.316	67.035	67.648	0.73631					27	10	3	0	0	0	0.025235	1	25195	25195		96.111	31.875	1	9215200			23845	3919	17342	17463	23359	23359					-0.02632917226344489
KAMGIMNSF	9	2 Oxidation (M)	_KAM(Oxidation (M))GIM(Oxidation (M))NSF_		KAM(1)GIM(1)NSF		KAM(44)GIM(44)NSF	0	0	2		nc|ENSG00000261716|Q6DN03|H2BC20P;ENSG00000273802|ENST00000541790|H2BC8;nc|ENSG00000220323|Q6DRA6|H2BC19P;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000276410|ENST00000615966|H2BC3;ENST00000465850.1_1_3:113822098-113822344:-|nuORF;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000274641|ENST00000616182|H2BC17;ENST00000369385.5_1_1:149814728-149815097:+|nuORF;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000234289|ENST00000599962|H2BC12L;ENST00000436555.1_1_1:228651947-228652295:-|nuORF;HIST1H2BJ|p.S57F|1|0.4|ENSG00000124635|chr6:27132581-27132581|G/A|missense_variant	nc|ENSG00000261716|Q6DN03|H2BC20P	nc|ENSG00000261716|Q6DN03|H2BC20P	MSMS	A375_MHC_IP_R1	1	515.6714477539062	2	515.738445	1029.46234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.47	1	31.47	30.97	31.97	0								0	0	0	0.092288	1	10078	10078		43.858	9.7559	1				23846	3919	17342	17464	23360	23360		203;204			-0.051215249515735195
KAMGIMNSF	9	2 Oxidation (M)	_KAM(Oxidation (M))GIM(Oxidation (M))NSF_		KAM(1)GIM(1)NSF		KAM(89)GIM(89)NSF	0	0	2		nc|ENSG00000261716|Q6DN03|H2BC20P;ENSG00000273802|ENST00000541790|H2BC8;nc|ENSG00000220323|Q6DRA6|H2BC19P;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000276410|ENST00000615966|H2BC3;ENST00000465850.1_1_3:113822098-113822344:-|nuORF;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000274641|ENST00000616182|H2BC17;ENST00000369385.5_1_1:149814728-149815097:+|nuORF;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000234289|ENST00000599962|H2BC12L;ENST00000436555.1_1_1:228651947-228652295:-|nuORF;HIST1H2BJ|p.S57F|1|0.4|ENSG00000124635|chr6:27132581-27132581|G/A|missense_variant	nc|ENSG00000261716|Q6DN03|H2BC20P	nc|ENSG00000261716|Q6DN03|H2BC20P	MULTI-MSMS	A375_MHC_IP_R2	2	516.1382446289062	2	515.738445	1029.46234	-0.79214	-0.00040854	-0.35296	-0.00018203	-1.1451	-0.00059057	515.7386070323906	30.809	1.1142	31.528	30.911	32.026	0.71857					39	21	3	0	0	0	0.015701	2	10679	10679;10851		88.954	39.021	1	4904000			23847	3919	17342	17464	23361;23362	23361		203;204			-0.051215249515735195
KAMGIMNSF	9	Oxidation (M)	_KAM(Oxidation (M))GIMNSF_		KAM(0.802)GIM(0.198)NSF		KAM(6.1)GIM(-6.1)NSF	0	0	1		nc|ENSG00000261716|Q6DN03|H2BC20P;ENSG00000273802|ENST00000541790|H2BC8;nc|ENSG00000220323|Q6DRA6|H2BC19P;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000276410|ENST00000615966|H2BC3;ENST00000465850.1_1_3:113822098-113822344:-|nuORF;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000274641|ENST00000616182|H2BC17;ENST00000369385.5_1_1:149814728-149815097:+|nuORF;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000234289|ENST00000599962|H2BC12L;ENST00000436555.1_1_1:228651947-228652295:-|nuORF;HIST1H2BJ|p.S57F|1|0.4|ENSG00000124635|chr6:27132581-27132581|G/A|missense_variant	nc|ENSG00000261716|Q6DN03|H2BC20P	nc|ENSG00000261716|Q6DN03|H2BC20P	MULTI-SECPEP	A375_MHC_IP_R1	1	508.16595458984375	2	507.740988	1013.46742	-0.41236	-0.00020937	0.49771	0.00025271	0.085345	4.3333E-05	507.7407790723289	52.369	0.60886	52.369	52.034	52.643	0					34	11	5	0	0	0	0.3213	1	18621	18621		46.021	9.8939	2	4730300			23848	3919	17342	17465	23363	23363		203;204			-0.0387722108895332
KAMTGVEQW	9	Unmodified	_KAMTGVEQW_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	A375_MHC_IP_R1	1	525.6576538085938	2	525.257859	1048.50117	-0.060687	-3.1876E-05	-2.3445	-0.0012315	-2.4052	-0.0012633	525.2565126975502	44.626	1.4753	44.626	43.859	45.334	0					85	28	4	0	0	0	0.0098085	2	15650	15571;15650		114.2	39.779	1	23011000			23849	6668	17343	17466	23364;23365	23365					-0.021144763255506405
KAMTGVEQW	9	Unmodified	_KAMTGVEQW_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	A375_MHC_IP_R2	2	525.6575317382812	2	525.257859	1048.50117	-0.29736	-0.00015619	-2.1483	-0.0011284	-2.4456	-0.0012846	525.2566885648762	43.831	1.9228	44.601	43.112	45.035	0.7691					67	37	3	0	0	0	0.017012	1	16367	16367		87.258	32.485	1	29068000			23850	6668	17343	17466	23366	23366					-0.021144763255506405
KAMTGVEQW	9	Oxidation (M)	_KAM(Oxidation (M))TGVEQW_		KAM(1)TGVEQW		KAM(70)TGVEQW	0	0	1		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-SECPEP	A375_MHC_IP_R1	1	533.9703979492188	2	533.255317	1064.49608	-0.74959	-0.00039972	-0.62882	-0.00033532	-1.3784	-0.00073505	533.2552674182698	33.062	1.0136	33.062	32.734	33.748	0					44	19	4	0	0	0	0.05217	1	10781	10781		70.332	28.492	1	40723000			23851	6668	17343	17467	23367	23367		355			-0.033587801881594714
KAMTGVEQW	9	Oxidation (M)	_KAM(Oxidation (M))TGVEQW_		KAM(1)TGVEQW		KAM(93)TGVEQW	0	0	1		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-SECPEP	A375_MHC_IP_R2	2	533.6549072265625	2	533.255317	1064.49608	-0.7763	-0.00041397	-1.3331	-0.00071089	-2.1094	-0.0011249	533.2551549907243	32.48	0.86491	33.217	32.857	33.722	0.73691					43	16	3	0	0	0	0.048303	1	11467	11467		93.166	15.016	1	48342000			23852	6668	17343	17467	23368	23368		355			-0.033587801881594714
KANAFLKEF	9	Unmodified	_KANAFLKEF_					0	0	0		nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	MULTI-SECPEP	A375_MHC_IP_R1	1	534.6965942382812	2	534.297842	1066.58113	-0.50631	-0.00027052	-0.88107	-0.00047075	-1.3874	-0.00074127	534.2976310671717	49.922	0.51198	49.922	49.692	50.204	0					12	9	2	0	0	0	0.26374	1	17692	17692		47.732	20.848	1	2938000			23853	14849	17344	17468	23369	23369					0.05050333339931967
KANAFLKEF	9	Unmodified	_KANAFLKEF_					0	0	0		nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	MULTI-SECPEP	A375_MHC_IP_R2	2	534.6971435546875	2	534.297842	1066.58113	-0.90397	-0.00048299	-0.26143	-0.00013968	-1.1654	-0.00062267	534.2975909356535	48.892	0.40885	49.649	49.434	49.843	0.75737					16	7	3	0	0	0	0.13199	1	18379	18379		69.338	38.702	1	2558600			23854	14849	17344	17468	23370	23370					0.05050333339931967
KANITFEY	8	Unmodified	_KANITFEY_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	A375_MHC_IP_R1	1	493.65301513671875	2	493.2531	984.491647	-0.31571	-0.00015572	0.21202	0.00010458	-0.10369	-5.1145E-05	493.2532575300396	53.551	0.40608	53.551	53.301	53.707	0					19	7	3	0	0	0	0.16582	1	19095	19095		78.149	20.678	1	4556000			23855	5699	17345	17469	23371	23371					-0.001219213394392682
KANITFEY	8	Unmodified	_KANITFEY_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	A375_MHC_IP_R2	2	493.65289306640625	2	493.2531	984.491647	-0.9997	-0.0004931	0.35978	0.00017746	-0.63991	-0.00031564	493.2533430433383	52.762	0.45539	53.513	53.284	53.739	0.75105					16	8	2	0	0	0	0.012192	1	19893	19893		112.59	45.249	1	4138300			23856	5699	17345	17469	23372	23372					-0.001219213394392682
KAPAGAAV	8	Unmodified	_KAPAGAAV_					0	0	0			REV__ENSG00000159217|ENST00000290341|IGF2BP1	REV__ENSG00000159217|ENST00000290341|IGF2BP1	MULTI-SECPEP	A375_MHC_IP_R2	2	684.7556762695312	1	684.403901	683.396624	-0.63505	-0.00043463	-0.30459	-0.00020847	-0.93964	-0.00064309	684.4037419081645	67.464	0.55965	68.201	68.052	68.612	0.73631					12	10	2	0	0	0	0.972	1	25542	25542		5.7604	0	1	1377600	+		23857	20106	17346	17470	23373	23373					0.04226189980033723
KAPAGAAV	8	Unmodified	_KAPAGAAV_					0	0	0			REV__ENSG00000159217|ENST00000290341|IGF2BP1	REV__ENSG00000159217|ENST00000290341|IGF2BP1	MULTI-MATCH	A375_MHC_IP_R1	1		1	684.403901	683.396624	-0.76316	-0.00052231	-0.19977	-0.00013672	-0.96293	-0.00065903	684.4037204483934	68.489	0.45812	68.489	68.31	68.769	0	0.1441	2.0737E-05	NaN	5.7604	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1942800	+		23858	20106	17346	17470							0.04226189980033723
KAPAPGPP	8	Unmodified	_KAPAPGPP_					0	0	0			REV__ENSG00000166963|ENST00000300231|MAP1A	REV__ENSG00000166963|ENST00000300231|MAP1A	MULTI-SECPEP	A375_MHC_IP_R1	1	368.1137390136719	2	367.713414	733.412274	0.38304	0.00014085	0.64511	0.00023722	1.0282	0.00037807	367.7135962771252	56.282	0.4565	56.282	56.041	56.498	0					13	8	2	0	0	0	0.972	1	20183	20183		2.3027	0	1	1890900	+		23859	20723	17347	17471	23374	23374					0.034904764970860924
KAPKSATT	8	Unmodified	_KAPKSATT_					0	0	0			REV__ENSG00000066422|ENST00000312938|ZBTB11	REV__ENSG00000066422|ENST00000312938|ZBTB11	MULTI-MSMS	A375_MHC_IP_R2	2	402.63427734375	2	402.23471	802.454868	0.012312	4.9523E-06	-1.1609	-0.00046694	-1.1485	-0.00046198	402.2342040779854	131.29	0.61179	131.48	131.29	131.9	0.18953					19	11	2	0	0	0	0.77804	1	51649	51649		2.0598	0	1	8971300	+		23860	16516	17348	17472	23375	23375					0.04573826834655392
KAPLIPTL	8	Unmodified	_KAPLIPTL_					0	0	0		nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209	nc|ENSG00000146842|Q96SK2-2|TMEM209	nc|ENSG00000146842|Q96SK2-2|TMEM209	MULTI-SECPEP	A375_MHC_IP_R2	2	427.1808776855469	2	426.781296	851.54804	-0.17943	-7.6576E-05	-0.091456	-3.9032E-05	-0.27088	-0.00011561	426.7812165433506	76.811	0.50511	77.553	77.251	77.756	0.74168					14	9	2	0	0	0	0.40488	1	29173	29173		57.471	0	1	1498900			23861	5642	17349	17473	23376	23376					0.11632751287891097
KAPPAPLAA	9	Unmodified	_KAPPAPLAA_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MULTI-MSMS	A375_MHC_IP_R1	1	418.6556396484375	2	418.255446	834.496338	-0.20515	-8.5805E-05	0.20686	8.652E-05	0.0017105	7.1543E-07	418.2554918431756	29.745	0.84806	29.745	29.453	30.301	0					27	16	2	0	0	0	0.098973	1	9343	9343		50.855	8.7605	1	9867300			23862	7854	17350	17474	23377	23377					0.0724700759398047
KAPPAPLAA	9	Unmodified	_KAPPAPLAA_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MULTI-MSMS	A375_MHC_IP_R2	2	418.65509033203125	2	418.255446	834.496338	-0.88428	-0.00036986	0.51578	0.00021573	-0.3685	-0.00015413	418.255573416367	29.106	1.2042	29.805	29.384	30.588	0.69872					33	23	2	0	0	0	0.060021	1	10091	10091		60.39	18.295	1	13097000			23863	7854	17350	17474	23378	23378					0.0724700759398047
KAPPLGREWL	10	Unmodified	_KAPPLGREWL_					0	0	0			REV__ENST00000562945.2_1_16:34428784-34428826:-|nuORF	REV__ENST00000562945.2_1_16:34428784-34428826:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	389.93988037109375	3	389.560869	1165.66078	-0.055936	-2.179E-05	3.2399	0.0012621	3.1839	0.0012403	389.5622791937807	23.441	0.20485	23.441	23.278	23.483	0					5	3	2	0	0	0	0.67901	1	6435	6435		14.957	0.55178	1	1136800	+		23864	26197	17351	17475	23379	23379					0.08457400013935512
KAPRALRL	8	Unmodified	_KAPRALRL_					0	0	0			REV__ENSG00000167755|ENST00000310157|KLK6	REV__ENSG00000167755|ENST00000310157|KLK6	MULTI-MSMS	A375_MHC_IP_R2	2	925.0101928710938	1	924.610146	923.602869	-0.11012	-0.00010182	-0.32889	-0.0003041	-0.43901	-0.00040591	924.609665395933	147.66	0.30283	147.68	147.57	147.87	0.019897					59	25	3	0	0	0	0.77839	1	57372	57372		0.79363	0	1	824780	+		23865	20790	17352	17476	23380	23380					0.13801182879160478
KAPRALRL	8	Unmodified	_KAPRALRL_					0	0	0			REV__ENSG00000167755|ENST00000310157|KLK6	REV__ENSG00000167755|ENST00000310157|KLK6	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	924.610146	923.602869	-0.11012	-0.00010182	-0.32889	-0.0003041	-0.43901	-0.00040591	924.609665395933	147.66	0.30283	147.68	147.57	147.87	0.019897	0.021791	-0.00017636	NaN	0.79363	59	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	824780	+		23866	20790	17352	17476							0.13801182879160478
KAPRATAQ	8	Unmodified	_KAPRATAQ_					0	0	0		LBP|p.E234K|1|0.47|ENSG00000129988|chr20:38364022-38364022|G/A|missense_variant	LBP|p.E234K|1|0.47|ENSG00000129988|chr20:38364022-38364022|G/A|missense_variant	LBP|p.E234K|1|0.47|ENSG00000129988|chr20:38364022-38364022|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	421.1432189941406	2	421.745776	841.477	-0.090062	-3.7983E-05	0.46275	0.00019516	0.37269	0.00015718	421.7461073613405	103.37	0.45822	104.14	103.89	104.35	0.76428					11	8	2	0	0	0	0.972	1	39125	39125		0.69038	0	1	876210			23867	14285	17353	17477	23381	23381					0.04992051303088374
KAPRLAKPHK	10	Unmodified	_KAPRLAKPHK_					0	0	0		SIPA1L3|p.P1331L|1|0.22|ENSG00000105738|chr19:38164690-38164690|C/T|missense_variant	SIPA1L3|p.P1331L|1|0.22|ENSG00000105738|chr19:38164690-38164690|C/T|missense_variant	SIPA1L3|p.P1331L|1|0.22|ENSG00000105738|chr19:38164690-38164690|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	382.6268615722656	3	382.580375	1144.7193	0.35923	0.00013743	-0.22261	-8.5166E-05	0.13662	5.2267E-05	382.58022612974247	33.84	0.35341	33.84	33.648	34.001	0					11	6	2	0	0	0	0.71455	1	11056	11056		5.7834	1.5939	1	1430800			23868	29161	17354	17478	23382	23382					0.15272501379058667
KAPRLAKPHK	10	Unmodified	_KAPRLAKPHK_					0	0	0		SIPA1L3|p.P1331L|1|0.22|ENSG00000105738|chr19:38164690-38164690|C/T|missense_variant	SIPA1L3|p.P1331L|1|0.22|ENSG00000105738|chr19:38164690-38164690|C/T|missense_variant	SIPA1L3|p.P1331L|1|0.22|ENSG00000105738|chr19:38164690-38164690|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	382.580375	1144.7193	-0.16042	-6.1372E-05	0.41044	0.00015703	0.25003	9.5655E-05	382.5804069536936	32.748	0.35452	33.485	33.317	33.671	0.73691	-0.17778	0.0004685	NaN	5.7834	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1677200			23869	29161	17354	17478							0.15272501379058667
KAQAKDLVEV	10	Unmodified	_KAQAKDLVEV_					0	0	0			REV__ENSG00000171206|ENST00000643721|TRIM8	REV__ENSG00000171206|ENST00000643721|TRIM8	MSMS	A375_MHC_IP_R2	2	550.7328491210938	2	550.819138	1099.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.84	1	135.95	135.45	136.45	0.11134								0	0	0	0.14555	1	53380	53380		26.268	2.2476	1		+		23870	21052	17355	17479	23383	23383					0.07789683677492576
KAQALRPD	8	Unmodified	_KAQALRPD_					0	0	0			REV__nc|ENSG00000015520|Q9UHC9-4|NPC1L1	REV__nc|ENSG00000015520|Q9UHC9-4|NPC1L1	MULTI-MSMS	A375_MHC_IP_R1	1	450.15863037109375	2	449.758884	897.503215	-0.50814	-0.00022854	0.22686	0.00010203	-0.28128	-0.00012651	449.7589280153789	29.175	0.70879	29.175	28.694	29.403	0					25	13	3	0	0	0	0.69583	1	9083	9083		36.044	5.8194	1	6393300	+		23871	16247	17356	17480	23384	23384					0.05036320474562217
KAQDFVKKF	9	Unmodified	_KAQDFVKKF_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-SECPEP	A375_MHC_IP_R1	1	371.2818603515625	3	370.88172	1109.62333	0.16358	6.0669E-05	-0.24449	-9.0677E-05	-0.080908	-3.0007E-05	370.88171052134334	27.731	0.85706	27.731	27.381	28.238	0					43	16	4	0	0	0	0.091583	1	8429	8429		64.692	46.318	1	26445000			23872	3744	17357	17481	23385	23385					0.0729030874831551
KAQDFVKKF	9	Unmodified	_KAQDFVKKF_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-SECPEP	A375_MHC_IP_R1	1	556.2178955078125	2	555.818941	1109.62333	-0.71392	-0.00039681	0.13397	7.4462E-05	-0.57996	-0.00032235	555.8187026205059	27.709	0.35305	27.709	27.584	27.937	0					11	6	2	0	0	0	0.77636	1	8509	8509		8.4443	0	1	2363400			23873	3744	17357	17481	23386	23386					0.0729030874831551
KAQDFVKKF	9	Unmodified	_KAQDFVKKF_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-SECPEP	A375_MHC_IP_R2	2	371.2818908691406	3	370.88172	1109.62333	0.25562	9.4803E-05	-0.61511	-0.00022813	-0.35949	-0.00013333	370.8815910148158	27.015	0.66455	27.686	27.323	27.988	0.67051					32	12	3	0	0	0	0.11849	1	9179	9179		64.927	44.346	1	26953000			23874	3744	17357	17481	23387	23387					0.0729030874831551
KAQDFVKKF	9	Unmodified	_KAQDFVKKF_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-SECPEP	A375_MHC_IP_R2	2	556.2186889648438	2	555.818941	1109.62333	-0.9077	-0.00050452	-0.033753	-1.876E-05	-0.94146	-0.00052328	555.8188736998552	27.088	0.35936	27.766	27.433	27.792	0.67857					9	6	2	0	0	0	0.52521	1	9214	9214		32.898	20.657	1	2198600			23875	3744	17357	17481	23388	23388					0.0729030874831551
KAQGTFVRV	9	Unmodified	_KAQGTFVRV_					0	0	0			REV__ENST00000593157.5_1_19:13216299-13227549:-|nuORF	REV__ENST00000593157.5_1_19:13216299-13227549:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	503.6955871582031	2	503.295633	1004.57671	-0.72961	-0.00036721	0.12557	6.3198E-05	-0.60405	-0.00030401	503.29569242272044	142.61	1.2641	142.61	141.78	143.04	0					36	24	2	0	0	0	0.80516	1	54742	54742		1.6526	0	1	1871900	+		23876	17351	17358	17482	23389	23389					0.07460868917041807
KAQKLIYCL	9	Unmodified	_KAQKLIYCL_					0	0	0		RGS21|p.E110K|1|0.58|ENSG00000253148|chr1:192365993-192365993|G/A|missense_variant	RGS21|p.E110K|1|0.58|ENSG00000253148|chr1:192365993-192365993|G/A|missense_variant	RGS21|p.E110K|1|0.58|ENSG00000253148|chr1:192365993-192365993|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	1079.1475830078125	1	1079.62816	1078.62089	-0.049521	-5.3464E-05	-1.7293	-0.001867	-1.7789	-0.0019205	1080.6278652505587	120.17	0.55811	120.17	119.69	120.25	0					14	10	2	0	0	0	0.77834	1	44494	44494		4.756	0	1	33524000			23877	29071	17359	17483	23390	23390					0.0847213701902092
KAQLERLLL	9	Unmodified	_KAQLERLLL_					0	0	0			REV__ENST00000587439.5_1_19:36108795-36110661:+|nuORF	REV__ENST00000587439.5_1_19:36108795-36110661:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	542.7471313476562	2	542.347866	1082.68118	-0.63702	-0.00034549	0.13652	7.4043E-05	-0.5005	-0.00027144	542.3476874580475	147.32	0.31349	147.34	147.26	147.58	0.019913					77	38	3	0	0	0	0.77526	1	57282	57282		0.6015	0	1	320570	+		23878	22834	17360	17484	23391	23391					0.14314570673764138
KAQLQVDRFA	10	Unmodified	_KAQLQVDRFA_					0	0	0		nc|ENSG00000122008|Q9UBT6-3|POLK;ENSG00000122008|ENST00000241436|POLK;ENST00000508867.5_1_5:74842847-74877278:+|nuORF;ENST00000506928.5_1_5:74842847-74879138:+|nuORF;nc|ENSG00000122008|Q9UBT6-6|POLK;nc|ENSG00000122008|Q9UBT6-2|POLK;nc|ENSG00000122008|Q9UBT6-5|POLK	nc|ENSG00000122008|Q9UBT6-3|POLK	nc|ENSG00000122008|Q9UBT6-3|POLK	MULTI-SECPEP	A375_MHC_IP_R1	1	588.706298828125	2	588.330205	1174.64586	-0.38882	-0.00022875	0.59203	0.00034831	0.20321	0.00011955	588.3310607538479	52.528	0.76213	52.528	52.336	53.099	0					25	14	3	0	0	0	0.92878	1	18835	18835		6.6304	0	1	4914000			23879	3755	17361	17485	23392	23392					0.06551908145934249
KAQLVEEW	8	Unmodified	_KAQLVEEW_					0	0	0		ENSG00000163536|ENST00000446050|SERPINI1	ENSG00000163536|ENST00000446050|SERPINI1	ENSG00000163536|ENST00000446050|SERPINI1	MULTI-SECPEP	A375_MHC_IP_R1	1	501.1778259277344	2	501.766374	1001.5182	-0.5822	-0.00029213	-0.46737	-0.00023451	-1.0496	-0.00052664	501.76628831942594	85.437	0.50752	85.437	85.311	85.819	0					12	9	2	0	0	0	0.91495	1	31449	31449		18.135	0	1	1341700			23880	6680	17362	17486	23393	23393					0.017497675518939104
KAQLVEEW	8	Unmodified	_KAQLVEEW_					0	0	0		ENSG00000163536|ENST00000446050|SERPINI1	ENSG00000163536|ENST00000446050|SERPINI1	ENSG00000163536|ENST00000446050|SERPINI1	MULTI-SECPEP	A375_MHC_IP_R2	2	501.1784973144531	2	501.766374	1001.5182	-0.50424	-0.00025301	-0.36963	-0.00018547	-0.87388	-0.00043848	501.76627767885276	84.575	0.50481	85.311	85.018	85.523	0.73602					14	9	2	0	0	0	0.91495	1	32224	32224		18.135	3.5533	1	1063900			23881	6680	17362	17486	23394	23394					0.017497675518939104
KAQVLNIGQIY	11	Unmodified	_KAQVLNIGQIY_					0	0	0			REV__ENSG00000262814|ENST00000333676|MRPL12	REV__ENSG00000262814|ENST00000333676|MRPL12	MULTI-MSMS	A375_MHC_IP_R2	2	416.9629211425781	3	416.243317	1245.70812	-0.30126	-0.0001254	-0.30524	-0.00012706	-0.6065	-0.00025245	416.2431723503106	38.157	0.46227	38.931	38.636	39.098	0.77451					22	8	4	0	0	0	0.72909	1	13980	13980		9.7643	1.3199	1	4620500	+		23882	22919	17363	17487	23395	23395					0.09509634494270358
KARAALLASL	10	Unmodified	_KARAALLASL_					0	0	0		TCN2|p.V272A|1|0.26|ENSG00000185339|chr22:30615662-30615662|T/C|missense_variant	TCN2|p.V272A|1|0.26|ENSG00000185339|chr22:30615662-30615662|T/C|missense_variant	TCN2|p.V272A|1|0.26|ENSG00000185339|chr22:30615662-30615662|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	506.6163024902344	2	507.326934	1012.63931	-0.76383	-0.00038751	0.095528	4.8464E-05	-0.6683	-0.00033905	507.3269343915987	31.505	0.40856	32.223	32.026	32.434	0.71857					12	7	2	0	0	0	0.8528	1	11124	11124		7.609	1.8771	1	1284600			23883	29313	17364	17488	23396	23396					0.1335001498522388
KARETIELF	9	Unmodified	_KARETIELF_					0	0	0			REV__nc|ENSG00000165863|Q8WW14-2|SPMIP5	REV__nc|ENSG00000165863|Q8WW14-2|SPMIP5	MULTI-SECPEP	A375_MHC_IP_R2	2	369.28167724609375	3	369.544996	1105.61316	0.29448	0.00010882	-0.51983	-0.0001921	-0.22535	-8.3276E-05	369.54475592110816	70.613	0.50542	71.347	71.048	71.553	0.73421					14	9	2	0	0	0	0.65527	1	26776	26776		16.566	0	1	3685200	+		23884	20631	17365	17489	23397	23397					0.06457701023077789
KARGKVVLVP	10	Unmodified	_KARGKVVLVP_					0	0	0		ENST00000381475.3_1:147851207-147931919:-|nuORF	ENST00000381475.3_1:147851207-147931919:-|nuORF	ENST00000381475.3_1:147851207-147931919:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	356.2718505859375	3	356.241359	1065.70225	-0.94639	-0.00033714	0.58552	0.00020859	-0.36088	-0.00012856	356.24055864298947	28.887	1.7596	29.585	29.234	30.993	0.69872					67	34	3	0	0	0	0.72358	1	10394	10394		1.7423	0.54893	1	13883000			23885	11376	17366	17490	23398	23398					0.1720258077325525
KARHAGAP	8	Unmodified	_KARHAGAP_					0	0	0			REV__XIRP1|p.E1277K|1|0.34|ENSG00000168334|chr3:39185617-39185617|C/T|missense_variant	REV__XIRP1|p.E1277K|1|0.34|ENSG00000168334|chr3:39185617-39185617|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	404.6329345703125	2	404.232836	806.45112	-0.21814	-8.8179E-05	0.50909	0.00020579	0.29095	0.00011761	404.23293658000745	111.71	1.8811	111.71	111.26	113.14	0					80	36	4	0	0	0	0.77839	1	41075	41075		0.79363	0	1	21682000	+		23886	29003	17367	17491	23399	23399					0.04015201851461825
KARHAGAP	8	Unmodified	_KARHAGAP_					0	0	0			REV__XIRP1|p.E1277K|1|0.34|ENSG00000168334|chr3:39185617-39185617|C/T|missense_variant	REV__XIRP1|p.E1277K|1|0.34|ENSG00000168334|chr3:39185617-39185617|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	404.6329040527344	2	404.232836	806.45112	-0.10758	-4.3489E-05	0.74914	0.00030283	0.64156	0.00025934	404.2329920853793	116.11	0.66036	116.11	115.63	116.29	0					20	12	2	0	0	0	0.77839	1	42539	42539		0.79363	0	1	3674400	+		23887	29003	17367	17491	23400	23400					0.04015201851461825
KARHAGAP	8	Unmodified	_KARHAGAP_					0	0	0			REV__XIRP1|p.E1277K|1|0.34|ENSG00000168334|chr3:39185617-39185617|C/T|missense_variant	REV__XIRP1|p.E1277K|1|0.34|ENSG00000168334|chr3:39185617-39185617|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	404.60211181640625	2	404.232836	806.45112	-0.21814	-8.8179E-05	0.50909	0.00020579	0.29095	0.00011761	404.23293658000745	111.71	1.8811	111.71	111.26	113.14	0					80	36	4	0	0	0	0.972	1	41207	41207		0.79363	0	1	21682000	+		23888	29003	17367	17491	23401	23401					0.04015201851461825
KARHAGAP	8	Unmodified	_KARHAGAP_					0	0	0			REV__XIRP1|p.E1277K|1|0.34|ENSG00000168334|chr3:39185617-39185617|C/T|missense_variant	REV__XIRP1|p.E1277K|1|0.34|ENSG00000168334|chr3:39185617-39185617|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	404.6015625	2	404.232836	806.45112	0.19647	7.9421E-05	0.044156	1.7849E-05	0.24063	9.727E-05	404.2327422804913	111.21	1.9408	111.95	111.5	113.44	0.73692					81	37	4	0	0	0	0.972	1	42156	42156		0.79363	0	1	24868000	+		23889	29003	17367	17491	23402	23402					0.04015201851461825
KARHAGAP	8	Unmodified	_KARHAGAP_					0	0	0			REV__XIRP1|p.E1277K|1|0.34|ENSG00000168334|chr3:39185617-39185617|C/T|missense_variant	REV__XIRP1|p.E1277K|1|0.34|ENSG00000168334|chr3:39185617-39185617|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	404.232836	806.45112	-0.10758	-4.3489E-05	0.74914	0.00030283	0.64156	0.00025934	404.2329920853793	116.11	0.66036	116.11	115.63	116.29	0	-0.041241	0.00025937	NaN	0.79363	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3674400	+		23890	29003	17367	17491							0.04015201851461825
KARHAGAP	8	Unmodified	_KARHAGAP_					0	0	0			REV__XIRP1|p.E1277K|1|0.34|ENSG00000168334|chr3:39185617-39185617|C/T|missense_variant	REV__XIRP1|p.E1277K|1|0.34|ENSG00000168334|chr3:39185617-39185617|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	404.232836	806.45112	0.19594	7.9203E-05	-0.063945	-2.5849E-05	0.13199	5.3355E-05	404.232720551186	115.51	0.91602	116.2	115.63	116.54	0.68999	0.041241	-0.00039798	NaN	0.79363	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3343800	+		23891	29003	17367	17491							0.04015201851461825
KARHPQLLY	9	Unmodified	_KARHPQLLY_					0	0	0		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	MULTI-MSMS	A375_MHC_IP_R2	2	376.2887268066406	3	375.889097	1124.64546	-0.13452	-5.0565E-05	-1.3226	-0.00049717	-1.4572	-0.00054773	375.8888959452921	24.801	0.5066	25.445	25.263	25.77	0.64368					18	9	4	0	0	0	0.29123	1	8210	8210		31.268	5.869	1	10953000			23892	3174	17368	17492	23403	23403					0.08812533216769225
KARKEKIVK	9	Unmodified	_KARKEKIVK_					0	0	0			REV__tr|U7T461|U7T461_FUSNUHTHrpiR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00267PE=4SV=1	REV__tr|U7T461|U7T461_FUSNUHTHrpiR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00267PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	1100.1766357421875	1	1099.73099	1098.72371	0.10926	0.00012016	1.0017	0.0011016	1.111	0.0012218	1100.7351799751489	118.66	0.71035	118.66	118.42	119.13	0					17	13	2	0	0	0	0.81368	1	43715	43715		1.6526	0	1	33746000	+		23893	28793	17369	17493	23404	23404					0.17829965801979597
KARKKKLN	8	Unmodified	_KARKKKLN_					0	0	0		nc|ENSG00000104885|Q8TEK3-1|DOT1L;ENSG00000104885|ENST00000398665|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	MULTI-MSMS	A375_MHC_IP_R2	2	493.73492431640625	2	493.335093	984.655633	-0.31064	-0.00015325	-0.36229	-0.00017873	-0.67293	-0.00033198	493.33481094853266	147.56	0.4252	147.58	147.5	147.93	0.019913					61	35	3	0	0	0	0.77839	1	57356	57356		0.79363	0	1	416370			23894	14521	17370	17494	23405	23405					0.16269140941972182
KARKKKLN	8	Unmodified	_KARKKKLN_					0	0	0		nc|ENSG00000104885|Q8TEK3-1|DOT1L;ENSG00000104885|ENST00000398665|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	493.335093	984.655633	-0.70251	-0.00034657	-0.019951	-9.8424E-06	-0.72246	-0.00035641	493.3350115310436	147.55	0.32352	147.55	147.42	147.75	0	-0.013332	0.00014866	NaN	0.79363	58	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	478010			23895	14521	17370	17494							0.16269140941972182
KARLFWLWLVL	11	Unmodified	_KARLFWLWLVL_					0	0	0		CHST12|p.R8W|1|0.31|ENSG00000136213|chr7:2432661-2432661|C/T|missense_variant	CHST12|p.R8W|1|0.31|ENSG00000136213|chr7:2432661-2432661|C/T|missense_variant	CHST12|p.R8W|1|0.31|ENSG00000136213|chr7:2432661-2432661|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	482.6866760253906	3	482.299097	1443.87546	-0.38743	-0.00018686	0.4056	0.00019562	0.018165	8.761E-06	482.29912380499184	137.98	1.8154	138.06	137.81	139.62	0.083969					75	35	5	0	0	0	0.73881	1	54052	54052		0.50596	0.41111	1	15676000			23896	531	17371	17495	23406	23406					0.1712794682969161
KARLISAIF	9	Unmodified	_KARLISAIF_					0	0	0		ENST00000466452.1_1_1:161140355-161140406:+|nuORF	ENST00000466452.1_1_1:161140355-161140406:+|nuORF	ENST00000466452.1_1_1:161140355-161140406:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	510.2232360839844	2	509.824027	1017.6335	-0.43065	-0.00021956	-0.36456	-0.00018586	-0.79522	-0.00040542	509.82381777227727	75.371	0.65424	75.371	75.009	75.664	0					23	12	3	0	0	0	0.33896	1	27453	27453		47.594	3.822	1	3632900			23897	12261	17372	17496	23407	23407					0.12538916473556583
KARLISAIF	9	Unmodified	_KARLISAIF_					0	0	0		ENST00000466452.1_1_1:161140355-161140406:+|nuORF	ENST00000466452.1_1_1:161140355-161140406:+|nuORF	ENST00000466452.1_1_1:161140355-161140406:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	510.2236633300781	2	509.824027	1017.6335	-0.75515	-0.000385	-0.088061	-4.4896E-05	-0.84322	-0.00042989	509.8239837838328	74.111	0.50718	74.849	74.604	75.111	0.73751					22	9	3	0	0	0	0.40377	1	28145	28145		41.956	11.319	1	4154600			23898	12261	17372	17496	23408	23408					0.12538916473556583
KARLPLRLF	9	Unmodified	_KARLPLRLF_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	A375_MHC_IP_R1	1	372.6482238769531	3	371.913354	1112.71823	0.36439	0.00013552	-0.18938	-7.0434E-05	0.17501	6.5088E-05	371.913258961444	61.863	1.2277	61.863	61.483	62.711	0					67	23	5	0	0	0	0.44183	1	22269	22269		22.658	9.0432	1	60149000			23899	2067	17373	17497	23409	23409					0.16638287010164277
KARLPLRLF	9	Unmodified	_KARLPLRLF_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	A375_MHC_IP_R2	2	557.7659912109375	2	557.366393	1112.71823	-1.0472	-0.00058368	0.3388	0.00018883	-0.70841	-0.00039484	557.3664529380648	60.619	0.40638	61.364	61.109	61.515	0.74503					18	7	3	0	0	0	0.6343	1	22960	22960		18.146	3.3081	1	1779500			23900	2067	17373	17497	23410	23410					0.16638287010164277
KARLQLPTI	9	Unmodified	_KARLQLPTI_					0	0	0		PTPRK|p.M98I|1|0.53|ENSG00000152894|chr6:128322240-128322240|C/T|missense_variant	PTPRK|p.M98I|1|0.53|ENSG00000152894|chr6:128322240-128322240|C/T|missense_variant	PTPRK|p.M98I|1|0.53|ENSG00000152894|chr6:128322240-128322240|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	520.734130859375	2	520.334759	1038.65496	-0.45578	-0.00023716	-0.2264	-0.00011781	-0.68218	-0.00035496	520.3345094590918	147.41	0.38065	147.43	147.31	147.69	0.019897					82	42	3	0	0	0	0.77154	1	57302	57302		0.6015	0	1	519820			23901	15249	17374	17498	23411	23411					0.13718301502262875
KARPDLERI	9	Unmodified	_KARPDLERI_					0	0	0		ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1;SAMD1|p.P333Dfs*27|1|0.12|ENSG00000141858|chr19:14088912-14088913|-/CG|frameshift_variant	ENSG00000141858|ENST00000533683|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	MULTI-SECPEP	A375_MHC_IP_R1	1	366.9524230957031	3	366.552374	1096.63529	-0.024285	-8.9017E-06	0.31783	0.0001165	0.29354	0.0001076	366.5524680635805	23.457	1.018	23.457	23.227	24.245	0					48	19	4	0	0	0	0.30133	1	6422	6422		35.08	12.305	1	58912000			23902	5274	17375	17499	23412	23412					0.0908392549151813
KARPDLERI	9	Unmodified	_KARPDLERI_					0	0	0		ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1;SAMD1|p.P333Dfs*27|1|0.12|ENSG00000141858|chr19:14088912-14088913|-/CG|frameshift_variant	ENSG00000141858|ENST00000533683|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	MULTI-MSMS	A375_MHC_IP_R2	2	366.95233154296875	3	366.552374	1096.63529	-0.22049	-8.0821E-05	0.21686	7.9492E-05	-0.0036235	-1.3282E-06	366.55243157123675	21.22	1.2679	21.84	21.017	22.285	0.61932					74	24	4	0	0	0	0.15441	1	6709	6709		41.347	11.91	1	14554000			23903	5274	17375	17499	23413	23413					0.0908392549151813
KARPELALF	9	Unmodified	_KARPELALF_					0	0	0		ENST00000521195.1_1_8:104320096-104343734:+|nuORF;nc|ENSG00000164930|O60353-2|FZD6;ENSG00000164930|ENST00000358755|FZD6	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	523.2131958007812	2	522.813659	1043.61277	-0.97142	-0.00050787	-0.38	-0.00019867	-1.3514	-0.00070654	522.813490799243	59.108	0.50732	59.855	59.54	60.047	0.74714					15	9	2	0	0	0	0.5212	1	22385	22385		26.268	2.2476	1	3007000			23904	6893	17376	17500	23414	23414					0.09270326093860604
KARPNIPVY	9	Unmodified	_KARPNIPVY_					0	0	0		ENSG00000141012|ENST00000268695|GALNS;ENST00000568613.5_1_16:88880849-88909575:-|nuORF	ENSG00000141012|ENST00000268695|GALNS	ENSG00000141012|ENST00000268695|GALNS	MULTI-SECPEP	A375_MHC_IP_R2	2	353.9444885253906	3	353.209948	1056.60801	-0.25125	-8.8745E-05	0.38138	0.00013471	0.13013	4.5963E-05	353.54451508098055	30.795	0.65515	31.514	31.064	31.719	0.71857					22	12	2	0	0	0	0.58271	1	10856	10856		19.362	7.1872	1	5485100			23905	5207	17377	17501	23415	23415					0.081974419511198
KARQLFRRRRP	11	Unmodified	_KARQLFRRRRP_					0	0	0			REV__nc|ENSG00000106683|P53667-4|LIMK1	REV__nc|ENSG00000106683|P53667-4|LIMK1	MULTI-MSMS	A375_MHC_IP_R1	1	743.3644409179688	2	742.463284	1482.91202	-0.87742	-0.00065145	-0.57165	-0.00042443	-1.4491	-0.0010759	742.4635025536163	140.13	0.46008	140.13	139.83	140.29	0					34	8	5	0	0	0	0.73924	1	53799	53799		0	0	1	16389000	+		23906	27161	17378	17502	23416	23416					0.18987636498945903
KARQLRRPLRR	11	Unmodified	_KARQLRRPLRR_					0	0	0			REV__ENST00000435009.2_1_13:41341020-41341101:-|nuORF	REV__ENST00000435009.2_1_13:41341020-41341101:-|nuORF	MSMS	A375_MHC_IP_R2	2	725.8677368164062	2	725.471109	1448.92767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.41	1	143.43	142.93	143.93	0.024414								0	0	0	0.16354	1	56046	56046		0.30703	0.30703	1		+		23907	24744	17379	17503	23417	23417					0.2211592301600831
KARTKRWQRRR	11	Unmodified	_KARTKRWQRRR_					0	0	0			REV__nc|ENSG00000175513|Q3SY00-2|TSGA10IP	REV__nc|ENSG00000175513|Q3SY00-2|TSGA10IP	MULTI-MSMS	A375_MHC_IP_R1	1	771.8713989257812	2	771.471641	1540.92873	-0.82976	-0.00064014	-0.049443	-3.8144E-05	-0.87921	-0.00067828	771.471315385769	143.1	0.55551	143.1	142.74	143.29	0					28	10	3	0	0	0	0.73902	1	54852	54852		0.30703	0.30703	1	3114400	+		23908	21349	17380	17504	23418	23418					0.1799013738489066
KARTKRWQRRR	11	Unmodified	_KARTKRWQRRR_					0	0	0			REV__nc|ENSG00000175513|Q3SY00-2|TSGA10IP	REV__nc|ENSG00000175513|Q3SY00-2|TSGA10IP	MULTI-MSMS	A375_MHC_IP_R2	2	771.8707275390625	2	771.471641	1540.92873	-0.74496	-0.00057471	0.052696	4.0654E-05	-0.69226	-0.00053406	771.9732762804939	143.15	0.65813	143.19	142.74	143.39	0.030731					30	12	3	0	0	0	0.73809	1	55899	55899		1.1933	1.1933	1	4033900	+		23909	21349	17380	17504	23419	23419					0.1799013738489066
KARTKRWQRRR	11	Unmodified	_KARTKRWQRRR_					0	0	0			REV__nc|ENSG00000175513|Q3SY00-2|TSGA10IP	REV__nc|ENSG00000175513|Q3SY00-2|TSGA10IP	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	771.471641	1540.92873	-0.82976	-0.00064014	-0.049443	-3.8144E-05	-0.87921	-0.00067828	771.471315385769	143.1	0.55551	143.1	142.74	143.29	0	-0.042031	-8.6597E-05	NaN	1.1933	28	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3114400	+		23910	21349	17380	17504							0.1799013738489066
KARTKRWQRRR	11	Unmodified	_KARTKRWQRRR_					0	0	0			REV__nc|ENSG00000175513|Q3SY00-2|TSGA10IP	REV__nc|ENSG00000175513|Q3SY00-2|TSGA10IP	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	771.471641	1540.92873	-0.74496	-0.00057471	0.052696	4.0654E-05	-0.69226	-0.00053406	771.9732762804939	143.15	0.65813	143.19	142.74	143.39	0.030731	0.042031	7.0998E-05	NaN	1.1933	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4033900	+		23911	21349	17380	17504							0.1799013738489066
KARVDSFFY	9	Unmodified	_KARVDSFFY_					0	0	0		ENSG00000142599|ENST00000400908|RERE;ENST00000480342.5_1_1:8525723-8716473:-|nuORF	ENSG00000142599|ENST00000400908|RERE	ENSG00000142599|ENST00000400908|RERE	MULTI-MSMS	A375_MHC_IP_R2	2	378.5976867675781	3	378.197708	1131.57129	-0.27321	-0.00010333	0.16991	6.4261E-05	-0.1033	-3.9067E-05	378.1978022645979	52.345	0.45345	53.098	52.831	53.285	0.75225					17	8	3	0	0	0	0.53367	1	19743	19743		22.658	4.7949	1	2288000			23912	5314	17381	17505	23420	23420					0.01077145334556917
KARVDSFFY	9	Unmodified	_KARVDSFFY_					0	0	0		ENSG00000142599|ENST00000400908|RERE;ENST00000480342.5_1_1:8525723-8716473:-|nuORF	ENSG00000142599|ENST00000400908|RERE	ENSG00000142599|ENST00000400908|RERE	MULTI-MATCH	A375_MHC_IP_R1	1		3	378.197708	1131.57129	0.23611	8.9298E-05	0.087529	3.3103E-05	0.32364	0.0001224	378.5319893919361	53.232	0.45671	53.232	52.997	53.453	0	0.06733	-5.3055E-05	NaN	22.658	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2246800			23913	5314	17381	17505							0.01077145334556917
KARVDSFFY	9	Unmodified	_KARVDSFFY_					0	0	0		ENSG00000142599|ENST00000400908|RERE;ENST00000480342.5_1_1:8525723-8716473:-|nuORF	ENSG00000142599|ENST00000400908|RERE	ENSG00000142599|ENST00000400908|RERE	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	378.197708	1131.57129	-0.27321	-0.00010333	0.16991	6.4261E-05	-0.1033	-3.9067E-05	378.1978022645979	52.345	0.45345	53.098	52.831	53.285	0.75225	-0.06733	4.0418E-05	NaN	22.658	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2288000			23914	5314	17381	17505							0.01077145334556917
KARWRRVF	8	Unmodified	_KARWRRVF_					0	0	0			REV__ENST00000467897.2_1_7:27168846-27192162:-|nuORF	REV__ENST00000467897.2_1_7:27168846-27192162:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	373.94366455078125	3	373.561315	1117.66212	0.4793	0.00017905	2.0915	0.00078129	2.5708	0.00096034	373.5623059354856	35.358	0.40639	35.358	35.167	35.573	0					11	7	2	0	0	0	0.972	1	11801	11801		3.2813	0	1	932760	+		23915	25065	17382	17506	23421	23421					0.10799078893364822
KARYHWLVLPW	11	Unmodified	_KARYHWLVLPW_					0	0	0		nc|ENSG00000137074|Q7Z2E3-6|APTX;nc|ENSG00000137074|Q7Z2E3-2|APTX;nc|ENSG00000137074|Q7Z2E3-4|APTX;nc|ENSG00000137074|Q7Z2E3-3|APTX;nc|ENSG00000137074|Q7Z2E3-5|APTX;nc|ENSG00000137074|Q7Z2E3-9|APTX;nc|ENSG00000137074|Q7Z2E3-10|APTX;nc|ENSG00000137074|Q7Z2E3-11|APTX;nc|ENSG00000137074|Q7Z2E3-8|APTX;ENSG00000137074|ENST00000379817|APTX;nc|ENSG00000137074|Q7Z2E3|APTX	nc|ENSG00000137074|Q7Z2E3-6|APTX	nc|ENSG00000137074|Q7Z2E3-6|APTX	MULTI-MSMS	A375_MHC_IP_R1	1	490.67919921875	3	490.278585	1467.81392	0.11052	5.4187E-05	0.80617	0.00039525	0.91669	0.00044943	490.2790671084076	38.883	0.50804	38.883	38.679	39.187	0					19	9	3	0	0	0	0.73658	1	13252	13252		2.6312	1.3016	1	4291100			23916	4855	17383	17507	23422	23422					0.0987301513039256
KARYHWLVLPW	11	Unmodified	_KARYHWLVLPW_					0	0	0		nc|ENSG00000137074|Q7Z2E3-6|APTX;nc|ENSG00000137074|Q7Z2E3-2|APTX;nc|ENSG00000137074|Q7Z2E3-4|APTX;nc|ENSG00000137074|Q7Z2E3-3|APTX;nc|ENSG00000137074|Q7Z2E3-5|APTX;nc|ENSG00000137074|Q7Z2E3-9|APTX;nc|ENSG00000137074|Q7Z2E3-10|APTX;nc|ENSG00000137074|Q7Z2E3-11|APTX;nc|ENSG00000137074|Q7Z2E3-8|APTX;ENSG00000137074|ENST00000379817|APTX;nc|ENSG00000137074|Q7Z2E3|APTX	nc|ENSG00000137074|Q7Z2E3-6|APTX	nc|ENSG00000137074|Q7Z2E3-6|APTX	MULTI-MSMS	A375_MHC_IP_R2	2	490.6787414550781	3	490.278585	1467.81392	-0.79717	-0.00039083	1.2194	0.00059787	0.42228	0.00020703	490.2790331867222	38.071	0.51327	38.845	38.585	39.098	0.77451					17	9	3	0	0	0	0.73658	1	14003	14003		2.6312	1.3016	1	2426800			23917	4855	17383	17507	23423	23423					0.0987301513039256
KARYHWLVLPW	11	Unmodified	_KARYHWLVLPW_					0	0	0		nc|ENSG00000137074|Q7Z2E3-6|APTX;nc|ENSG00000137074|Q7Z2E3-2|APTX;nc|ENSG00000137074|Q7Z2E3-4|APTX;nc|ENSG00000137074|Q7Z2E3-3|APTX;nc|ENSG00000137074|Q7Z2E3-5|APTX;nc|ENSG00000137074|Q7Z2E3-9|APTX;nc|ENSG00000137074|Q7Z2E3-10|APTX;nc|ENSG00000137074|Q7Z2E3-11|APTX;nc|ENSG00000137074|Q7Z2E3-8|APTX;ENSG00000137074|ENST00000379817|APTX;nc|ENSG00000137074|Q7Z2E3|APTX	nc|ENSG00000137074|Q7Z2E3-6|APTX	nc|ENSG00000137074|Q7Z2E3-6|APTX	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	490.278585	1467.81392	0.11052	5.4187E-05	0.80617	0.00039525	0.91669	0.00044943	490.2790671084076	38.883	0.50804	38.883	38.679	39.187	0	0.018577	-0.0002292	NaN	2.6312	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4291100			23918	4855	17383	17507							0.0987301513039256
KARYHWLVLPW	11	Unmodified	_KARYHWLVLPW_					0	0	0		nc|ENSG00000137074|Q7Z2E3-6|APTX;nc|ENSG00000137074|Q7Z2E3-2|APTX;nc|ENSG00000137074|Q7Z2E3-4|APTX;nc|ENSG00000137074|Q7Z2E3-3|APTX;nc|ENSG00000137074|Q7Z2E3-5|APTX;nc|ENSG00000137074|Q7Z2E3-9|APTX;nc|ENSG00000137074|Q7Z2E3-10|APTX;nc|ENSG00000137074|Q7Z2E3-11|APTX;nc|ENSG00000137074|Q7Z2E3-8|APTX;ENSG00000137074|ENST00000379817|APTX;nc|ENSG00000137074|Q7Z2E3|APTX	nc|ENSG00000137074|Q7Z2E3-6|APTX	nc|ENSG00000137074|Q7Z2E3-6|APTX	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	490.278585	1467.81392	-0.79717	-0.00039083	1.2194	0.00059787	0.42228	0.00020703	490.2790331867222	38.071	0.51327	38.845	38.585	39.098	0.77451	-0.018577	0.00037866	NaN	2.6312	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2426800			23919	4855	17383	17507							0.0987301513039256
KASARGPR	8	Unmodified	_KASARGPR_					0	0	0		ENST00000455981.1_1_9:132047789-132047906:+|nuORF	ENST00000455981.1_1_9:132047789-132047906:+|nuORF	ENST00000455981.1_1_9:132047789-132047906:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	421.9532165527344	2	421.751393	841.488233	0.043421	1.8313E-05	0.028197	1.1892E-05	0.071618	3.0205E-05	421.7513758274805	99.081	1.7281	99.081	97.54	99.268	0					58	33	3	0	0	0	0.972	1	36151	36151		2.3027	0	1	2989800			23920	12122	17384	17508	23424	23424					0.061148733972345326
KASDAFHFF	9	Unmodified	_KASDAFHFF_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000574210.5_1_17:2597327-2598221:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-MSMS	A375_MHC_IP_R1	1	535.6585693359375	2	535.258717	1068.50288	-0.70049	-0.00037494	0.21862	0.00011702	-0.48187	-0.00025792	535.258714375119	73.906	0.50596	73.906	73.589	74.095	0					21	9	3	0	0	0	0.012843	1	26926	26926		92.653	56.609	1	5107300			23921	4399	17385	17509	23425	23425					-0.028630992453145154
KASDAFHFF	9	Unmodified	_KASDAFHFF_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000574210.5_1_17:2597327-2598221:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-MSMS	A375_MHC_IP_R2	2	535.6583862304688	2	535.258717	1068.50288	-0.83223	-0.00044546	0.10822	5.7928E-05	-0.72401	-0.00038753	535.2586904396661	72.973	0.56118	73.709	73.48	74.041	0.73541					19	10	2	0	0	0	0.070818	1	27697	27697		56.177	34.43	1	5662400			23922	4399	17385	17509	23426	23426					-0.028630992453145154
KASDLYITL	9	Unmodified	_KASDLYITL_					0	0	0		ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-MSMS	A375_MHC_IP_R1	1	512.689208984375	2	512.289682	1022.56481	-0.57014	-0.00029208	0.24296	0.00012447	-0.32718	-0.00016761	512.2896535501311	80.213	0.86657	80.213	79.625	80.492	0					34	16	3	0	0	0	0.024574	1	29231	29231		79.596	14.361	1	17223000			23923	5388	17386	17510	23427	23427					0.05443207383166282
KASDLYITL	9	Unmodified	_KASDLYITL_					0	0	0		ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-MSMS	A375_MHC_IP_R2	2	512.688720703125	2	512.289682	1022.56481	-0.64591	-0.00033089	-0.0042171	-2.1604E-06	-0.65012	-0.00033305	512.2895380498144	79.341	0.65712	80.085	79.744	80.401	0.74474					34	12	4	0	0	0	0.035419	1	30052	30052		70.332	10.258	1	16098000			23924	5388	17386	17510	23428	23428					0.05443207383166282
KASENAIVW	9	Unmodified	_KASENAIVW_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000461733.5_1_3:183898306-183901401:+|nuORF;ENST00000480260.1_1_3:183899436-183900037:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MULTI-SECPEP	A375_MHC_IP_R2	2	509.6712341308594	2	509.271824	1016.5291	-1.3305	-0.00067759	1.1633	0.00059246	-0.16716	-8.5127E-05	509.27237505686173	53.255	0.86559	54.006	53.436	54.301	0.75105					31	16	3	0	0	0	0.24324	1	20068	20068		45.7	11.597	1	6482700			23925	6467	17387	17511	23429	23429					0.021491699261900976
KASILARL	8	Unmodified	_KASILARL_					0	0	0		ENSG00000011258|ENST00000586178|MBTD1;ENST00000591270.1_1_17:49270805-49337516:-|nuORF;nc|ENSG00000011258|Q05BQ5-2|MBTD1;nc|ENSG00000100395|Q969R5-2|L3MBTL2;nc|ENSG00000100395|Q969R5-3|L3MBTL2;ENST00000466589.5_1_22:41601366-41623356:+|nuORF;ENSG00000100395|ENST00000216237|L3MBTL2;ENST00000479978.5_1_22:41601366-41613299:+|nuORF	ENSG00000011258|ENST00000586178|MBTD1;nc|ENSG00000100395|Q969R5-2|L3MBTL2	nc|ENSG00000100395|Q969R5-2|L3MBTL2	MULTI-SECPEP	A375_MHC_IP_R1	1	436.6896057128906	2	436.28982	870.565087	-0.012759	-5.5666E-06	-0.2086	-9.101E-05	-0.22136	-9.6576E-05	436.28965091086656	43.378	0.50862	43.378	43.095	43.603	0					18	9	3	0	0	0	0.28442	1	15063	15063		69.105	15.272	1	3783900			23926	2173;995	17388	17512	23430	23430					0.12462671893706556
KASILARL	8	Unmodified	_KASILARL_					0	0	0		ENSG00000011258|ENST00000586178|MBTD1;ENST00000591270.1_1_17:49270805-49337516:-|nuORF;nc|ENSG00000011258|Q05BQ5-2|MBTD1;nc|ENSG00000100395|Q969R5-2|L3MBTL2;nc|ENSG00000100395|Q969R5-3|L3MBTL2;ENST00000466589.5_1_22:41601366-41623356:+|nuORF;ENSG00000100395|ENST00000216237|L3MBTL2;ENST00000479978.5_1_22:41601366-41613299:+|nuORF	ENSG00000011258|ENST00000586178|MBTD1;nc|ENSG00000100395|Q969R5-2|L3MBTL2	nc|ENSG00000100395|Q969R5-2|L3MBTL2	MULTI-SECPEP	A375_MHC_IP_R2	2	436.6897888183594	2	436.28982	870.565087	-0.22496	-9.8146E-05	-0.069036	-3.012E-05	-0.29399	-0.00012827	436.28977114403915	42.112	0.46039	42.884	42.757	43.218	0.7724					14	8	2	0	0	0	0.90057	1	15689	15689		22.736	1.1993	1	2666400			23927	2173;995	17388	17512	23431	23431					0.12462671893706556
KASLRELAL	9	Unmodified	_KASLRELAL_					0	0	0		ENST00000525522.5_1_11:494693-499199:-|nuORF;ENST00000525701.5_1_11:494693-500690:-|nuORF;ENSG00000023191|ENST00000354420|RNH1	ENST00000525522.5_1_11:494693-499199:-|nuORF	ENST00000525522.5_1_11:494693-499199:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	501.2105712890625	2	500.811116	999.60768	-0.52646	-0.00026366	0.1601	8.0179E-05	-0.36636	-0.00018348	500.81119262579494	46.726	0.76782	46.726	46.495	47.263	0					49	14	5	0	0	0	0.09145	1	16377	16377		78.06	22.558	1	106760000			23928	1073	17389	17513	23432	23432					0.10786022231263814
KASLRELAL	9	Unmodified	_KASLRELAL_					0	0	0		ENST00000525522.5_1_11:494693-499199:-|nuORF;ENST00000525701.5_1_11:494693-500690:-|nuORF;ENSG00000023191|ENST00000354420|RNH1	ENST00000525522.5_1_11:494693-499199:-|nuORF	ENST00000525522.5_1_11:494693-499199:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	501.18182373046875	2	500.811116	999.60768	-0.58159	-0.00029127	0.060797	3.0448E-05	-0.52079	-0.00026082	500.81110370106995	45.663	1.06	46.429	46.15	47.21	0.76518					50	20	5	0	0	0	0.016541	1	17083	17083		107.1	40.643	1	82022000			23929	1073	17389	17513	23433	23433					0.10786022231263814
KASRVRVLF	9	Unmodified	_KASRVRVLF_					0	0	0		OLFML3|p.P204L|1|0.32|ENSG00000116774|chr1:113981159-113981159|C/T|missense_variant	OLFML3|p.P204L|1|0.32|ENSG00000116774|chr1:113981159-113981159|C/T|missense_variant	OLFML3|p.P204L|1|0.32|ENSG00000116774|chr1:113981159-113981159|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	358.9292297363281	3	359.229342	1074.6662	-0.23396	-8.4046E-05	-0.58169	-0.00020896	-0.81565	-0.000293	359.2291248816992	31.305	0.40972	32.024	31.77	32.18	0.71857					11	7	2	0	0	0	0.74412	1	11053	11053		19.362	13.17	1	1247300			23930	15052	17390	17514	23434	23434					0.13185123596394988
KASRVRVLF	9	Unmodified	_KASRVRVLF_					0	0	0		OLFML3|p.P204L|1|0.32|ENSG00000116774|chr1:113981159-113981159|C/T|missense_variant	OLFML3|p.P204L|1|0.32|ENSG00000116774|chr1:113981159-113981159|C/T|missense_variant	OLFML3|p.P204L|1|0.32|ENSG00000116774|chr1:113981159-113981159|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	359.229342	1074.6662	-0.05746	-2.0641E-05	-0.11192	-4.0206E-05	-0.16938	-6.0847E-05	359.5636278445736	32.338	0.35714	32.338	32.127	32.485	0	0.15716	0.00028059	NaN	19.362	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2616300			23931	15052	17390	17514							0.13185123596394988
KASSITREL	9	Unmodified	_KASSITREL_					0	0	0		nc|ENSG00000130779|P30622-2|CLIP1;nc|ENSG00000130779|P30622-1|CLIP1;ENSG00000130779|ENST00000620786|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	MULTI-MSMS	A375_MHC_IP_R1	1	502.9271240234375	2	502.790381	1003.56621	-0.61226	-0.00030784	-0.076691	-3.856E-05	-0.68895	-0.0003464	502.7903766005891	24.017	0.4067	24.017	23.838	24.245	0					17	7	4	0	0	0	0.31609	1	6702	6702		29.437	7.9002	1	14883000			23932	4282	17391	17515	23435	23435					0.06456841471947428
KASSITREL	9	Unmodified	_KASSITREL_					0	0	0		nc|ENSG00000130779|P30622-2|CLIP1;nc|ENSG00000130779|P30622-1|CLIP1;ENSG00000130779|ENST00000620786|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1895751953125	2	502.790381	1003.56621	-0.96303	-0.0004842	-0.081903	-4.118E-05	-1.0449	-0.00052538	502.7903017130465	23.22	0.50593	23.85	23.623	24.129	0.63014					23	9	4	0	0	0	0.67471	1	7443	7443		22.658	22.658	1	6218200			23933	4282	17391	17515	23436	23436					0.06456841471947428
KASTATKG	8	Unmodified	_KASTATKG_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R1	1	762.8834838867188	1	763.430844	762.423567	-0.84522	-0.00064527	1.8876	0.0014411	1.0424	0.0007958	763.4321381507655	143.71	0.24394	143.71	143.54	143.78	0					7	4	2	0	0	0	0.972	1	55115	55115		0.69038	0	1	1148000	+		23934	19932	17392	17516	23437	23437					0.03285253800584087
KASTATKG	8	Unmodified	_KASTATKG_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	A375_MHC_IP_R2	2		1	763.430844	762.423567	-0.71883	-0.00054877	2.2679	0.0017314	1.5491	0.0011826	763.4323924998564	143.74	0.25385	143.77	143.59	143.84	0.024414	0.028498	8.2793E-05	NaN	0.69038	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1259000	+		23935	19932	17392	17516							0.03285253800584087
KATEDEYY	8	Unmodified	_KATEDEYY_					0	0	0		ENSG00000170369|ENST00000304725|CST2;ENSG00000101441|ENST00000217423|CST4	ENSG00000170369|ENST00000304725|CST2	ENSG00000170369|ENST00000304725|CST2	MSMS	A375_MHC_IP_R1	1	509.6935729980469	2	509.72183	1017.42911	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.222	1	49.222	48.722	49.722	0								0	0	0	0.16876	1	17401	17401		9.3474	1.4373	1				23936	2295	17393	17517	23438	23438					-0.07891112198285555
KATEYIQYM	9	Oxidation (M)	_KATEYIQYM(Oxidation (M))_		KATEYIQYM(1)		KATEYIQYM(96)	0	0	1		nc|ENSG00000125952|P61244-3|MAX;ENST00000557277.5_2_14:65544132-65569310:-|nuORF;nc|ENSG00000125952|P61244-4|MAX;nc|ENSG00000125952|P61244-2|MAX;ENST00000553951.1_1_14:65544523-65568380:-|nuORF;ENSG00000125952|ENST00000358664|MAX	nc|ENSG00000125952|P61244-3|MAX	nc|ENSG00000125952|P61244-3|MAX	MULTI-MSMS	A375_MHC_IP_R1	1	582.1758422851562	2	581.776082	1161.53761	-0.49417	-0.0002875	0.12903	7.5067E-05	-0.36514	-0.00021243	581.7760898858688	36.755	0.65796	36.755	36.287	36.945	0					26	12	3	0	0	0	0.0099737	2	12259	12259;12334		96.367	41.593	1	6165500			23937	4011	17394	17518	23439;23440	23439		205			-0.036696442195079726
KATEYIQYM	9	Oxidation (M)	_KATEYIQYM(Oxidation (M))_		KATEYIQYM(1)		KATEYIQYM(69)	0	0	1		nc|ENSG00000125952|P61244-3|MAX;ENST00000557277.5_2_14:65544132-65569310:-|nuORF;nc|ENSG00000125952|P61244-4|MAX;nc|ENSG00000125952|P61244-2|MAX;ENST00000553951.1_1_14:65544523-65568380:-|nuORF;ENSG00000125952|ENST00000358664|MAX	nc|ENSG00000125952|P61244-3|MAX	nc|ENSG00000125952|P61244-3|MAX	MULTI-MSMS	A375_MHC_IP_R1	1	582.1761474609375	2	581.776082	1161.53761	-0.14429	-8.3944E-05	-0.30789	-0.00017912	-0.45217	-0.00026306	581.7758644791875	56.917	0.35733	56.917	56.701	57.059	0					8	6	2	0	0	0	0.037683	1	20421	20421		69.105	14.331	1	1328700			23938	4011	17394	17518	23441	23441		205			-0.036696442195079726
KATEYIQYM	9	Oxidation (M)	_KATEYIQYM(Oxidation (M))_		KATEYIQYM(1)		KATEYIQYM(96)	0	0	1		nc|ENSG00000125952|P61244-3|MAX;ENST00000557277.5_2_14:65544132-65569310:-|nuORF;nc|ENSG00000125952|P61244-4|MAX;nc|ENSG00000125952|P61244-2|MAX;ENST00000553951.1_1_14:65544523-65568380:-|nuORF;ENSG00000125952|ENST00000358664|MAX	nc|ENSG00000125952|P61244-3|MAX	nc|ENSG00000125952|P61244-3|MAX	MULTI-MSMS	A375_MHC_IP_R2	2	582.1757202148438	2	581.776082	1161.53761	-0.49067	-0.00028546	0.094052	5.4717E-05	-0.39662	-0.00023074	581.7760750747274	35.981	0.6636	36.744	36.435	37.099	0.76338					22	12	2	0	0	0	0.0099737	1	13032	13032		96.367	50.346	1	6808400			23939	4011	17394	17518	23442	23442		205			-0.036696442195079726
KATEYIQYM	9	Unmodified	_KATEYIQYM_					0	0	0		nc|ENSG00000125952|P61244-3|MAX;ENST00000557277.5_2_14:65544132-65569310:-|nuORF;nc|ENSG00000125952|P61244-4|MAX;nc|ENSG00000125952|P61244-2|MAX;ENST00000553951.1_1_14:65544523-65568380:-|nuORF;ENSG00000125952|ENST00000358664|MAX	nc|ENSG00000125952|P61244-3|MAX	nc|ENSG00000125952|P61244-3|MAX	MULTI-SECPEP	A375_MHC_IP_R2	2	574.17822265625	2	573.778625	1145.5427	-0.4736	-0.00027174	-0.25751	-0.00014775	-0.73111	-0.00041949	573.7783446246408	56.173	0.56135	56.923	56.591	57.152	0.75015					30	10	4	0	0	0	0.046478	1	21213	21213		82.529	27.756	1	11611000			23940	4011	17394	17519	23443	23443					-0.024253403568764043
KATEYIQYM	9	Unmodified	_KATEYIQYM_					0	0	0		nc|ENSG00000125952|P61244-3|MAX;ENST00000557277.5_2_14:65544132-65569310:-|nuORF;nc|ENSG00000125952|P61244-4|MAX;nc|ENSG00000125952|P61244-2|MAX;ENST00000553951.1_1_14:65544523-65568380:-|nuORF;ENSG00000125952|ENST00000358664|MAX	nc|ENSG00000125952|P61244-3|MAX	nc|ENSG00000125952|P61244-3|MAX	MULTI-MATCH	A375_MHC_IP_R1	1		2	573.778625	1145.5427	-0.14872	-8.5331E-05	0.42521	0.00024398	0.27649	0.00015864	573.7785627344508	56.923	0.76526	56.923	56.548	57.313	0	-0.00011631	0.00045873	NaN	82.529	36	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7924700			23941	4011	17394	17519							-0.024253403568764043
KATEYVHSL	9	Unmodified	_KATEYVHSL_					0	0	0		ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	MULTI-SECPEP	A375_MHC_IP_R1	1	524.982177734375	2	524.277106	1046.53966	-0.79272	-0.0004156	-0.18676	-9.7914E-05	-0.97948	-0.00051352	524.2769865115339	26.748	0.45243	26.748	26.575	27.027	0					13	8	3	0	0	0	0.47674	1	7990	7990		36.506	13.77	1	2533900			23942	4567	17395	17520	23444	23444					0.01825152580613576
KATGFLKNF	9	Unmodified	_KATGFLKNF_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ACLY|p.A310Lfs*2|1|0.05|ENSG00000131473|chr17:41905578-41905597|GTCTGCTGCTCGCTGGGGGC/-|frameshift_variant;ACLY|p.Y317Mfs*11|1|0.06|ENSG00000131473|chr17:41905576-41905576|A/-|frameshift_variant	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-SECPEP	A375_MHC_IP_R1	1	513.6923828125	2	513.292559	1024.57057	-0.38974	-0.00020005	-1.0341	-0.00053081	-1.4239	-0.00073086	513.2923760490943	47.643	0.50356	47.643	47.416	47.92	0					15	9	2	0	0	0	0.14606	1	16774	16774		47.594	29.459	1	4261400			23943	4335	17396	17521	23445	23445					0.059263506854904335
KATIHKRNSS	10	Unmodified	_KATIHKRNSS_					0	0	0		ENST00000489226.5_1_9:130492547-130493681:+|nuORF;ENST00000488285.1_1_9:130486913-130493681:+|nuORF;ENSG00000167094|ENST00000373289|TTC16	ENST00000489226.5_1_9:130492547-130493681:+|nuORF	ENST00000489226.5_1_9:130492547-130493681:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1141.4854736328125	1	1141.64363	1140.63635	0.1061	0.00012113	-0.42999	-0.0004909	-0.3239	-0.00036977	1142.647041794205	107.7	0.25549	108.45	108.35	108.61	0.75436					6	4	2	0	0	0	0.72078	1	40649	40649		2.9952	0	1	1342600			23944	7155	17397	17522	23446	23446					0.07166139860419207
KATKKPGK	8	Unmodified	_KATKKPGK_					0	0	0			REV__ENSG00000025796|ENST00000369002|SEC63	REV__ENSG00000025796|ENST00000369002|SEC63	MSMS	A375_MHC_IP_R2	2	429.2909240722656	2	429.281995	856.549437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.3	1	148.32	147.82	148.82	0.018707								0	0	0	0.16876	1	57600	57600		0.52476	0	1		+		23945	16288	17398	17523	23447	23447					0.11542385376662878
KATKLLLH	8	Unmodified	_KATKLLLH_					0	0	0			REV__ENSG00000139209|ENST00000266579|SLC38A4	REV__ENSG00000139209|ENST00000266579|SLC38A4	MULTI-SECPEP	A375_MHC_IP_R2	2	462.65277099609375	2	462.30547	922.596387	-0.73499	-0.00033979	0.13672	6.3206E-05	-0.59828	-0.00027659	462.30554003596285	35.418	0.4046	36.181	36.03	36.435	0.76338					12	7	2	0	0	0	0.972	1	12830	12830		4.756	2.4533	1	1305400	+		23946	19142	17399	17524	23448	23448					0.13199244927807285
KATLIFLL	8	Unmodified	_KATLIFLL_					0	0	0			REV__ENST00000537120.5_1_11:61091345-61100440:-|nuORF;REV__ENSG00000167986|ENST00000301764|DDB1	REV__ENSG00000167986|ENST00000301764|DDB1	MULTI-SECPEP	A375_MHC_IP_R1	1	460.2039794921875	2	459.804771	917.59499	-0.073881	-3.3971E-05	-0.30291	-0.00013928	-0.37679	-0.00017325	459.80455640912095	117.7	0.60873	117.7	117.36	117.97	0					25	11	3	0	0	0	0.4193	1	43242	43242		49.933	0	1	14400000	+		23947	25919;20811	17400	17525	23449	23449					0.13289610839046873
KATLIFLL	8	Unmodified	_KATLIFLL_					0	0	0			REV__ENST00000537120.5_1_11:61091345-61100440:-|nuORF;REV__ENSG00000167986|ENST00000301764|DDB1	REV__ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	A375_MHC_IP_R2	2	460.20416259765625	2	459.804771	917.59499	-0.24816	-0.00011411	0.41645	0.00019149	0.16829	7.7382E-05	459.80480863834026	116.59	0.66096	117.25	116.97	117.63	0.65962					16	12	3	0	0	0	0.30248	1	44049	44049		58.679	2.1375	1	20996000	+		23948	25919;20811	17400	17525	23450	23450					0.13289610839046873
KATLIVHL	8	Unmodified	_KATLIVHL_					0	0	0		nc|ENSG00000196150|P15622-2|ZNF250;ENSG00000196150|ENST00000417550|ZNF250;nc|ENSG00000196150|P15622|ZNF250	nc|ENSG00000196150|P15622-2|ZNF250	nc|ENSG00000196150|P15622-2|ZNF250	MULTI-SECPEP	A375_MHC_IP_R1	1	448.19189453125	2	447.792195	893.569838	-0.015461	-6.9235E-06	-0.48245	-0.00021604	-0.49791	-0.00022296	447.79201609753096	51.156	0.40679	51.156	50.915	51.322	0					11	7	2	0	0	0	0.30564	1	18176	18176		64.236	22.142	1	2032500			23949	9005	17401	17526	23451	23451					0.1187955603646742
KATLIVHL	8	Unmodified	_KATLIVHL_					0	0	0		nc|ENSG00000196150|P15622-2|ZNF250;ENSG00000196150|ENST00000417550|ZNF250;nc|ENSG00000196150|P15622|ZNF250	nc|ENSG00000196150|P15622-2|ZNF250	nc|ENSG00000196150|P15622-2|ZNF250	MULTI-SECPEP	A375_MHC_IP_R2	2	448.1920166015625	2	447.792195	893.569838	-0.55036	-0.00024645	-0.0011979	-5.364E-07	-0.55155	-0.00024698	447.79216762694256	50.08	0.40719	50.834	50.65	51.057	0.75406					12	7	2	0	0	0	0.22702	1	18833	18833		74.423	32.328	1	1796900			23950	9005	17401	17526	23452	23452					0.1187955603646742
KATNVVRLL	9	Unmodified	_KATNVVRLL_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-MSMS	A375_MHC_IP_R1	1	507.7265319824219	2	507.326934	1012.63931	-0.62464	-0.0003169	-0.053877	-2.7333E-05	-0.67851	-0.00034423	507.32687147970137	32.56	0.45245	32.56	32.333	32.785	0					13	8	2	0	0	0	0.46465	1	10571	10571		21.537	4.4241	1	2306300			23951	2385	17402	17527	23453	23453					0.13350014985246617
KATNVVRLL	9	Unmodified	_KATNVVRLL_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	A375_MHC_IP_R1	1	507.72698974609375	2	507.326934	1012.63931	0.15239	7.7311E-05	-0.72177	-0.00036617	-0.56938	-0.00028886	507.32666492227816	44.853	2.9961	44.853	44.42	47.416	0					168	58	6	0	0	0	9.2202E-05	1	15590	15590		181.69	67.489	1	813250000			23952	2385	17402	17527	23454	23454					0.13350014985246617
KATNVVRLL	9	Unmodified	_KATNVVRLL_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	A375_MHC_IP_R2	2	507.01007080078125	2	507.326934	1012.63931	-0.55836	-0.00028327	-0.30627	-0.00015538	-0.86463	-0.00043865	507.326857833614	43.634	2.4317	44.403	44.025	46.457	0.76917					129	47	5	0	0	0	7.4118E-06	1	16288	16288		168.54	57.863	1	600920000			23953	2385	17402	17527	23455	23455					0.13350014985246617
KATQLERVL	9	Unmodified	_KATQLERVL_					0	0	0			REV__ENSG00000226650|ENST00000435029|KIF4B	REV__ENSG00000226650|ENST00000435029|KIF4B	MULTI-MSMS	A375_MHC_IP_R1	1	353.9258728027344	3	353.216991	1056.62914	-0.23535	-8.3129E-05	-1.1507	-0.00040643	-1.386	-0.00048956	353.5507200338388	27.78	0.45343	27.78	27.533	27.987	0					23	8	4	0	0	0	0.6343	1	8373	8373		12.873	1.3547	1	3595200	+		23954	22723	17403	17528	23456	23456					0.10309407260001535
KATRVNPGA	9	Unmodified	_KATRVNPGA_					0	0	0		tr|U7T3E4|U7T3E4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00241PE=4SV=1	tr|U7T3E4|U7T3E4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00241PE=4SV=1	tr|U7T3E4|U7T3E4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00241PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	457.66412353515625	2	457.264333	912.514114	-0.13296	-6.0799E-05	0.27225	0.00012449	0.13929	6.3693E-05	457.2643529469833	104.84	4.938	104.84	103.12	108.05	0					218	96	4	0	0	0	0.72985	1	39218	39218		4.3292	4.3292	1	9867800			23955	29971	17404	17529	23457	23457					0.05435722848858404
KATRVNPGA	9	Unmodified	_KATRVNPGA_					0	0	0		tr|U7T3E4|U7T3E4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00241PE=4SV=1	tr|U7T3E4|U7T3E4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00241PE=4SV=1	tr|U7T3E4|U7T3E4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00241PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	457.66357421875	2	457.264333	912.514114	0.032559	1.4888E-05	-0.14914	-6.8196E-05	-0.11658	-5.3308E-05	457.2642048587029	116.81	1.0166	116.81	116.14	117.16	0					37	19	3	0	0	0	0.72985	1	42883	42883		4.3292	2.0265	1	9144600			23956	29971	17404	17529	23458	23458					0.05435722848858404
KATRVNPGA	9	Unmodified	_KATRVNPGA_					0	0	0		tr|U7T3E4|U7T3E4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00241PE=4SV=1	tr|U7T3E4|U7T3E4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00241PE=4SV=1	tr|U7T3E4|U7T3E4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00241PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	457.6639404296875	2	457.264333	912.514114	-0.25959	-0.0001187	0.046537	2.128E-05	-0.21305	-9.742E-05	457.2642448379316	104.53	4.78	105.29	103.48	108.26	0.76308					181	93	3	0	0	0	0.73804	1	39674	39674		3.5965	1.2938	1	10426000			23957	29971	17404	17529	23459	23459					0.05435722848858404
KATRVNPGA	9	Unmodified	_KATRVNPGA_					0	0	0		tr|U7T3E4|U7T3E4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00241PE=4SV=1	tr|U7T3E4|U7T3E4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00241PE=4SV=1	tr|U7T3E4|U7T3E4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00241PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	457.264333	912.514114	0.032559	1.4888E-05	-0.14914	-6.8196E-05	-0.11658	-5.3308E-05	457.2642048587029	116.81	1.0166	116.81	116.14	117.16	0	0	0	NaN	4.3292	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9144600			23958	29971	17404	17529							0.05435722848858404
KATTDKLRV	9	Unmodified	_KATTDKLRV_					0	0	0			REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-MSMS	A375_MHC_IP_R1	1	516.7138671875	2	516.314023	1030.61349	-0.78764	-0.00040667	0.19515	0.00010076	-0.59249	-0.00030591	516.3139928484222	132.77	0.91945	132.77	132.59	133.51	0					42	17	5	0	0	0	0.73804	1	51186	51186		3.5965	1.2938	1	91511000	+		23959	20338	17405	17530	23460	23460					0.0994112074295117
KATTDMSGT	9	Unmodified	_KATTDMSGT_					0	0	0			REV__nc|ENSG00000123977|Q8N136-2|DAW1	REV__nc|ENSG00000123977|Q8N136-2|DAW1	MSMS	A375_MHC_IP_R2	2	456.2080383300781	2	456.210575	910.406597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.323	1	58.072	57.572	58.572	0.74894								0	0	0	0.15486	1	21674	21674		6.7232	0.96273	1		+		23960	18264	17406	17531	23461	23461					-0.05219034867525352
KATVRLLRRT	10	Unmodified	_KATVRLLRRT_					0	0	0		ENST00000513116.1_1_1:26211808-26212198:-|nuORF	ENST00000513116.1_1_1:26211808-26212198:-|nuORF	ENST00000513116.1_1_1:26211808-26212198:-|nuORF	MSMS	A375_MHC_IP_R1	1	405.26123046875	3	405.266568	1212.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.382	1	60.382	59.882	60.882	0								0	0	0	0.15622	1	21738	21738		0.62683	0	1				23961	12925	17407	17532	23462	23462					0.1799955795356709
KATYFSEKW	9	Unmodified	_KATYFSEKW_					0	0	0		nc|ENSG00000149600|Q86VX2-2|COMMD7;ENSG00000149600|ENST00000278980|COMMD7;ENST00000610160.1_1_20:31291624-31315937:-|nuORF	nc|ENSG00000149600|Q86VX2-2|COMMD7	nc|ENSG00000149600|Q86VX2-2|COMMD7	MULTI-SECPEP	A375_MHC_IP_R1	1	580.6928100585938	2	580.292756	1158.57096	0.23126	0.0001342	-0.16948	-9.835E-05	0.061772	3.5846E-05	580.2926565431451	44.593	0.51001	44.593	44.267	44.777	0					19	9	3	0	0	0	0.3459	1	15578	15578		55.249	37.102	1	3876900			23962	5820	17408	17533	23463	23463					-0.0019827438529773644
KATYFSEKW	9	Unmodified	_KATYFSEKW_					0	0	0		nc|ENSG00000149600|Q86VX2-2|COMMD7;ENSG00000149600|ENST00000278980|COMMD7;ENST00000610160.1_1_20:31291624-31315937:-|nuORF	nc|ENSG00000149600|Q86VX2-2|COMMD7	nc|ENSG00000149600|Q86VX2-2|COMMD7	MULTI-SECPEP	A375_MHC_IP_R2	2	580.6921997070312	2	580.292756	1158.57096	-0.098416	-5.711E-05	-0.41549	-0.00024111	-0.51391	-0.00029822	580.2924367928933	43.735	0.55415	44.505	44.278	44.833	0.7691					20	10	3	0	0	0	0.26303	1	16324	16324		62.869	62.869	1	5604600			23963	5820	17408	17533	23464	23464					-0.0019827438529773644
KAVDERQLF	9	Unmodified	_KAVDERQLF_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-SECPEP	A375_MHC_IP_R2	2	553.7031860351562	2	553.303655	1104.59276	-0.90101	-0.00049853	0.067922	3.7582E-05	-0.83309	-0.00046095	553.3035978351342	36.208	0.50907	36.979	36.749	37.258	0.7709					19	9	3	0	0	0	0.36673	1	13185	13185		38.615	20.468	1	7585900			23964	1301	17409	17534	23465	23465					0.04464530363270569
KAVDIVKQVW	10	Unmodified	_KAVDIVKQVW_					0	0	0		PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14	PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant	PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	395.9366149902344	3	395.904524	1184.69174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.144	1	63.144	62.644	63.644	0								0	0	0	0.15515	1	22817	22817		4.1166	0.2403	1				23965	15111	17410	17535	23466	23466					0.10678553328170892
KAVDKYQRL	9	Unmodified	_KAVDKYQRL_					0	0	0			REV__ENSG00000162433|ENST00000327299|AK4	REV__ENSG00000162433|ENST00000327299|AK4	MULTI-SECPEP	A375_MHC_IP_R2	2	561.1793212890625	2	560.827298	1119.64004	-0.65552	-0.00036763	-0.071138	-3.9896E-05	-0.72666	-0.00040753	560.8273329979797	31.333	0.20442	32.051	31.923	32.128	0.71857					5	3	2	0	0	0	0.57806	1	11031	11031		32.786	15.673	1	1679600	+		23966	20254	17411	17536	23467	23467					0.08500809634256257
KAVEDIHGLF	10	Unmodified	_KAVEDIHGLF_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-SECPEP	A375_MHC_IP_R1	1	564.6351318359375	2	564.806031	1127.59751	-0.41878	-0.00023653	0.01158	6.5403E-06	-0.4072	-0.00022999	564.8060535181828	59.285	0.55822	59.285	58.99	59.548	0					26	10	4	0	0	0	0.64789	1	21301	21301		26.021	11.182	1	8560700			23967	2743	17412	17537	23468	23468					0.03881414506031433
KAVEDIHGLF	10	Unmodified	_KAVEDIHGLF_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	A375_MHC_IP_R2	2	377.2727966308594	3	376.873113	1127.59751	-0.10378	-3.9113E-05	-0.10934	-4.1207E-05	-0.21312	-8.032E-05	376.87300505222277	58.387	0.56067	59.136	58.879	59.44	0.74894					27	10	3	0	0	0	0.0062475	1	22085	22085		80.896	61.27	1	7053400			23968	2743	17412	17537	23469	23469					0.03881414506031433
KAVEDIHGLF	10	Unmodified	_KAVEDIHGLF_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-SECPEP	A375_MHC_IP_R2	2	565.2047119140625	2	564.806031	1127.59751	-0.77752	-0.00043915	-0.21367	-0.00012068	-0.99119	-0.00055983	564.8056735541295	58.374	0.56181	59.123	58.929	59.491	0.74894					29	10	4	0	0	0	0.86849	1	22093	22093		12.175	0	1	6798900			23969	2743	17412	17537	23470	23470					0.03881414506031433
KAVEVLETQ	9	Unmodified	_KAVEVLETQ_					0	0	0			REV__nc|ENSG00000204930|A6H8Z2-3|FAM221B	REV__nc|ENSG00000204930|A6H8Z2-3|FAM221B	MSMS	A375_MHC_IP_R2	2	508.6922607421875	2	508.784764	1015.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.017	1	55.768	55.268	56.268	0.75075								0	0	0	0.15386	1	20774	20774		15.248	0	1		+		23970	22549	17413	17538	23471	23471					0.04782019377819324
KAVFLVPKW	9	Unmodified	_KAVFLVPKW_					0	0	0		ENSG00000118873|ENST00000358951|RAB3GAP2;nc|ENSG00000118873|Q9H2M9-2|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-SECPEP	A375_MHC_IP_R2	2	544.735107421875	2	544.33677	1086.65899	-0.80456	-0.00043795	-1.4363	-0.00078185	-2.2409	-0.0012198	544.3353956996118	76.479	0.86183	77.219	76.893	77.755	0.74052					28	16	3	0	0	0	0.05021	1	29030	29030		88.954	64.28	1	5041200			23971	3562	17414	17539	23472	23472					0.11912390995985334
KAVKATLVL	9	Unmodified	_KAVKATLVL_					0	0	0		nc|ENSG00000263715|P34998-5|CRHR1;nc|ENSG00000106113|Q13324-6|CRHR2;nc|ENSG00000106113|Q13324-5|CRHR2;nc|ENSG00000263715|P34998-3|CRHR1;nc|ENSG00000106113|Q13324-4|CRHR2;nc|ENSG00000106113|Q13324-3|CRHR2;nc|ENSG00000263715|P34998-4|CRHR1;nc|ENSG00000106113|Q13324-7|CRHR2;ENSG00000106113|ENST00000471646|CRHR2;ENSG00000120088|ENST00000314537|CRHR1;nc|ENSG00000106113|Q13324-2|CRHR2;nc|ENSG00000263715|P34998-1|CRHR1	nc|ENSG00000263715|P34998-5|CRHR1	nc|ENSG00000263715|P34998-5|CRHR1	MULTI-MSMS	A375_MHC_IP_R1	1	471.8815002441406	2	471.820953	941.627353	-0.16789	-7.9216E-05	0.15996	7.547E-05	-0.0079387	-3.7457E-06	471.8209133081758	45.549	0.35273	45.549	45.334	45.687	0					14	6	3	0	0	0	0.53367	1	15996	15996		18.146	3.3081	1	4180600			23972	2669	17415	17540	23473	23473					0.15420398242031297
KAVLKHFN	8	Unmodified	_KAVLKHFN_					0	0	0		nc|ENSG00000187609|Q8N9H8-3|EXD3;ENST00000491734.6_1_9:140201404-140249090:-|nuORF;nc|ENSG00000187609|Q8N9H8-2|EXD3;ENST00000487745.5_1_9:140201404-140247406:-|nuORF;ENSG00000187609|ENST00000340951|EXD3	nc|ENSG00000187609|Q8N9H8-3|EXD3	nc|ENSG00000187609|Q8N9H8-3|EXD3	MULTI-MSMS	A375_MHC_IP_R2	2	478.92364501953125	2	478.787444	955.560336	-0.42605	-0.00020399	-0.37935	-0.00018163	-0.8054	-0.00038561	478.78710384082274	47.845	0.40668	48.607	48.326	48.733	0.76128					10	7	2	0	0	0	0.77028	1	17970	17970		14.838	0	1	1809100			23973	8840	17416	17541	23474	23474					0.0807778775093766
KAVQPLLKV	9	Unmodified	_KAVQPLLKV_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|457|18.28|0.76|4.59|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI;ENST00000566895.5_1_15:89821926-89825160:+|nuORF	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MSMS	A375_MHC_IP_R1	1	498.19732666015625	2	498.334227	994.653902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.23	1	145.23	144.73	145.73	0								0	0	0	0.15486	1	55677	55677		0.6015	0	1				23974	440	17417	17542	23475	23475					0.15636087133384535
KAVRDALKTEF	11	Unmodified	_KAVRDALKTEF_					0	0	0		ENSG00000124172|ENST00000243997|ATP5F1E	ENSG00000124172|ENST00000243997|ATP5F1E	ENSG00000124172|ENST00000243997|ATP5F1E	MULTI-MSMS	A375_MHC_IP_R1	1	426.61029052734375	3	426.578588	1276.71394	-0.34141	-0.00014564	0.74931	0.00031964	0.4079	0.000174	426.91312770866494	32.473	0.70737	32.473	32.179	32.887	0					27	13	3	0	0	0	0.66409	1	10512	10512		18.34	1.5013	1	4829400			23975	3876	17418	17543	23476	23476					0.08664733005934977
KAVRDALKTEF	11	Unmodified	_KAVRDALKTEF_					0	0	0		ENSG00000124172|ENST00000243997|ATP5F1E	ENSG00000124172|ENST00000243997|ATP5F1E	ENSG00000124172|ENST00000243997|ATP5F1E	MULTI-MSMS	A375_MHC_IP_R2	2	426.97845458984375	3	426.578588	1276.71394	-0.19955	-8.5126E-05	0.12922	5.5124E-05	-0.07033	-3.0001E-05	426.57861667455194	31.639	0.4587	32.375	32.146	32.605	0.73691					14	8	2	0	0	0	0.72829	1	11214	11214		10.527	3.4904	1	4546500			23976	3876	17418	17543	23477	23477					0.08664733005934977
KAVRDALKTEF	11	Unmodified	_KAVRDALKTEF_					0	0	0		ENSG00000124172|ENST00000243997|ATP5F1E	ENSG00000124172|ENST00000243997|ATP5F1E	ENSG00000124172|ENST00000243997|ATP5F1E	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	426.578588	1276.71394	-0.19955	-8.5126E-05	0.12922	5.5124E-05	-0.07033	-3.0001E-05	426.57861667455194	31.639	0.4587	32.375	32.146	32.605	0.73691	-0.04876	-0.00021401	NaN	18.34	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4546500			23977	3876	17418	17543							0.08664733005934977
KAVSLQRKL	9	Unmodified	_KAVSLQRKL_					0	0	0		nc|ENSG00000075292|Q14966-2|ZNF638;nc|ENSG00000075292|Q14966-6|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638	nc|ENSG00000075292|Q14966-2|ZNF638	nc|ENSG00000075292|Q14966-2|ZNF638	MULTI-MSMS	A375_MHC_IP_R1	1	522.2396850585938	2	521.840208	1041.66586	-0.62386	-0.00032555	-0.046894	-2.4471E-05	-0.67075	-0.00035003	521.8401510601219	19.546	0.45819	19.546	19.368	19.827	0					15	8	3	0	0	0	0.28079	2	4897	4848;4897		32.037	8.2477	1	5601100			23978	1606	17419	17544	23478;23479	23479					0.14669703876575113
KAVTRHRRV	9	Unmodified	_KAVTRHRRV_					0	0	0		ENST00000466016.5_1_17:45904324-45908883:-|nuORF;ENSG00000159111|ENST00000351111|MRPL10;nc|ENSG00000159111|Q7Z7H8-2|MRPL10	ENST00000466016.5_1_17:45904324-45908883:-|nuORF	ENST00000466016.5_1_17:45904324-45908883:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	562.2518310546875	2	561.851973	1121.68939	-0.3958	-0.00022238	0.20431	0.00011479	-0.19149	-0.00010759	561.8518061547043	147.32	0.18521	147.34	147.27	147.45	0.019913					34	23	2	0	0	0	0.77154	1	57294	57294		0.6015	0.14316	1	124610			23979	6350	17420	17545	23480	23480					0.13341562433743093
KAVTRHRRV	9	Unmodified	_KAVTRHRRV_					0	0	0		ENST00000466016.5_1_17:45904324-45908883:-|nuORF;ENSG00000159111|ENST00000351111|MRPL10;nc|ENSG00000159111|Q7Z7H8-2|MRPL10	ENST00000466016.5_1_17:45904324-45908883:-|nuORF	ENST00000466016.5_1_17:45904324-45908883:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	561.851973	1121.68939	-0.81463	-0.0004577	-0.089599	-5.0342E-05	-0.90423	-0.00050804	561.8517856762243	147.3	0.14871	147.3	147.23	147.38	0	-0.020379	-0.00014996	NaN	0.6015	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129220			23980	6350	17420	17545							0.13341562433743093
KAVTRHRRV	9	Unmodified	_KAVTRHRRV_					0	0	0		ENST00000466016.5_1_17:45904324-45908883:-|nuORF;ENSG00000159111|ENST00000351111|MRPL10;nc|ENSG00000159111|Q7Z7H8-2|MRPL10	ENST00000466016.5_1_17:45904324-45908883:-|nuORF	ENST00000466016.5_1_17:45904324-45908883:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	561.851973	1121.68939	-0.3958	-0.00022238	0.20431	0.00011479	-0.19149	-0.00010759	561.8518061547043	147.32	0.18521	147.34	147.27	147.45	0.019913	0.020379	0.00018031	NaN	0.6015	34	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124610			23981	6350	17420	17545							0.13341562433743093
KAVYTWENT	9	Unmodified	_KAVYTWENT_					0	0	0			REV__nc|ENSG00000003096|Q9P2N7-2|KLHL13	REV__nc|ENSG00000003096|Q9P2N7-2|KLHL13	MSMS	A375_MHC_IP_R2	2	556.1981201171875	2	556.274564	1110.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.727	1	37.498	36.998	37.998	0.7709								0	0	0	0.14851	1	13406	13406		24.021	2.4836	1		+		23982	16091	17421	17546	23481	23481					-0.016271512820139833
KAWAEYVVEW	10	Unmodified	_KAWAEYVVEW_					0	0	0		ENSG00000188725|ENST00000339020|SMIM15	ENSG00000188725|ENST00000339020|SMIM15	ENSG00000188725|ENST00000339020|SMIM15	MULTI-SECPEP	A375_MHC_IP_R1	1	641.218994140625	2	640.819138	1279.62372	-0.38031	-0.00024371	0.3095	0.00019833	-0.07081	-4.5377E-05	640.8192821810607	106.99	0.51207	106.99	106.68	107.19	0					22	9	3	0	0	0	0.62699	1	39263	39263		42.312	18.523	1	2396600			23983	8927	17422	17547	23482	23482					-0.004903163224980744
KAWAEYVVEW	10	Unmodified	_KAWAEYVVEW_					0	0	0		ENSG00000188725|ENST00000339020|SMIM15	ENSG00000188725|ENST00000339020|SMIM15	ENSG00000188725|ENST00000339020|SMIM15	MULTI-MSMS	A375_MHC_IP_R2	2	641.2185668945312	2	640.819138	1279.62372	-0.76077	-0.00048752	0.84492	0.00054144	0.084151	5.3926E-05	640.8188941044393	106.15	0.56131	106.91	106.68	107.24	0.75977					23	10	3	0	0	0	0.58344	1	40150	40150		30.703	14.138	1	1920100			23984	8927	17422	17547	23483	23483					-0.004903163224980744
KAWNDIKKVY	10	Unmodified	_KAWNDIKKVY_					0	0	0		ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	422.6396484375	3	422.239796	1263.69756	-0.086279	-3.6431E-05	-0.22135	-9.3463E-05	-0.30763	-0.00012989	422.2396639426792	32.085	0.41196	32.085	31.87	32.282	0					21	7	4	0	0	0	0.0010243	1	10336	10336		146.57	93.104	1	10045000			23985	7879	17423	17548	23484	23484					0.0762565183983952
KAWNDIKKVY	10	Unmodified	_KAWNDIKKVY_					0	0	0		ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	422.6397705078125	3	422.239796	1263.69756	-0.1552	-6.553E-05	-0.20769	-8.7697E-05	-0.36289	-0.00015323	422.2396717390431	31.333	0.46087	32.051	31.821	32.282	0.71857					17	8	3	0	0	0	2.6603E-05	1	11063	11063		157.24	103.77	1	11403000			23986	7879	17423	17548	23485	23485					0.0762565183983952
KAWSVARL	8	Unmodified	_KAWSVARL_					0	0	0		CON__P02769	CON__P02769	CON__P02769	MULTI-MSMS	A375_MHC_IP_R1	1	466.17913818359375	2	465.779619	929.544686	-0.30123	-0.0001403	-0.30318	-0.00014121	-0.6044	-0.00028152	465.7794188316886	40.89	0.45353	40.89	40.66	41.114	0					21	8	3	0	0	0	0.11271	1	14073	14073		92.653	48.246	1	11279000		+	23987	586	17424	17549	23486	23486					0.07709501233898663
KAWSVARL	8	Unmodified	_KAWSVARL_					0	0	0		CON__P02769	CON__P02769	CON__P02769	MULTI-SECPEP	A375_MHC_IP_R2	2	466.17938232421875	2	465.779619	929.544686	-0.69686	-0.00032459	0.095837	4.4639E-05	-0.60103	-0.00027995	465.77952926332824	39.906	0.40633	40.681	40.473	40.879	0.77451					22	7	4	0	0	0	0.18771	1	14752	14752		89.401	45.542	1	9887700		+	23988	586	17424	17549	23487	23487					0.07709501233898663
KAWWALSV	8	Unmodified	_KAWWALSV_					0	0	0		ENST00000372748.7_1_1:40773379-40775829:-|nuORF	ENST00000372748.7_1_1:40773379-40775829:-|nuORF	ENST00000372748.7_1_1:40773379-40775829:-|nuORF	MSMS	A375_MHC_IP_R2	2	480.6737976074219	2	480.76872	959.522887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.615	1	51.369	50.869	51.869	0.75406								0	0	0	0.16876	1	19034	19034		18.135	1.1927	1				23989	11213	17425	17550	23488	23488					0.04150696485316985
KAYEAKQLEAL	11	Unmodified	_KAYEAKQLEAL_					0	0	0			REV__ENSG00000167971|ENST00000343516|CASKIN1	REV__ENSG00000167971|ENST00000343516|CASKIN1	MULTI-MSMS	A375_MHC_IP_R2	2	421.9556579589844	3	421.902961	1262.68705	-0.16644	-7.0223E-05	0.14931	6.2994E-05	-0.017134	-7.2287E-06	421.90282836410125	39.982	0.25357	40.757	40.626	40.879	0.77451					6	4	2	0	0	0	0.73048	1	14751	14751		8.4443	0.96724	1	916430	+		23990	20807	17426	17551	23489	23489					0.06621624394779246
KAYEALYNF	9	Unmodified	_KAYEALYNF_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	A375_MHC_IP_R1	1	560.1787719726562	2	559.779482	1117.54441	-0.29688	-0.00016618	-0.58738	-0.0003288	-0.88426	-0.00049499	559.7790443818632	71.605	0.55289	71.605	71.262	71.815	0					15	10	2	0	0	0	0.050868	1	26005	26005		63.961	27.833	1	4484600			23991	3064	17427	17552	23490	23490					-0.009659632766442883
KAYEALYNF	9	Unmodified	_KAYEALYNF_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	A375_MHC_IP_R2	2	560.1790771484375	2	559.779482	1117.54441	-0.76051	-0.00042572	0.10688	5.9831E-05	-0.65362	-0.00036588	559.7794455642619	70.896	0.45585	71.631	71.453	71.908	0.73421					15	8	2	0	0	0	0.050868	1	26892	26892		63.961	24.011	1	5892000			23992	3064	17427	17552	23491	23491					-0.009659632766442883
KAYEIEKRL	9	Unmodified	_KAYEIEKRL_					0	0	0		nc|ENSG00000172943|Q9UPP1-5|PHF8;nc|ENSG00000172943|Q9UPP1-4|PHF8;nc|ENSG00000172943|Q9UPP1-3|PHF8;ENSG00000172943|ENST00000338154|PHF8;nc|ENSG00000172943|Q9UPP1|PHF8;ENST00000490635.1_1_X:54026257-54040884:-|nuORF	nc|ENSG00000172943|Q9UPP1-5|PHF8	nc|ENSG00000172943|Q9UPP1-5|PHF8	MULTI-MSMS	A375_MHC_IP_R1	1	384.2925720214844	3	383.892396	1148.65536	0.15456	5.9335E-05	-0.097907	-3.7586E-05	0.056655	2.175E-05	383.89231953160197	24.473	0.65806	24.473	24.245	24.903	0					37	12	4	0	0	0	0.0099672	1	6934	6934		121.5	24.568	1	90371000			23993	7751	17428	17553	23492	23492					0.0869767643148407
KAYEIEKRL	9	Unmodified	_KAYEIEKRL_					0	0	0		nc|ENSG00000172943|Q9UPP1-5|PHF8;nc|ENSG00000172943|Q9UPP1-4|PHF8;nc|ENSG00000172943|Q9UPP1-3|PHF8;ENSG00000172943|ENST00000338154|PHF8;nc|ENSG00000172943|Q9UPP1|PHF8;ENST00000490635.1_1_X:54026257-54040884:-|nuORF	nc|ENSG00000172943|Q9UPP1-5|PHF8	nc|ENSG00000172943|Q9UPP1-5|PHF8	MULTI-MSMS	A375_MHC_IP_R2	2	384.2923278808594	3	383.892396	1148.65536	-0.37741	-0.00014488	0.027072	1.0393E-05	-0.35034	-0.00013449	383.89243112986077	23.728	0.81509	24.358	24.129	24.944	0.63014					33	15	5	0	0	0	0.0099672	1	7676	7676		121.5	24.568	1	67111000			23994	7751	17428	17553	23493	23493					0.0869767643148407
KAYEIEKRL	9	Unmodified	_KAYEIEKRL_					0	0	0		nc|ENSG00000172943|Q9UPP1-5|PHF8;nc|ENSG00000172943|Q9UPP1-4|PHF8;nc|ENSG00000172943|Q9UPP1-3|PHF8;ENSG00000172943|ENST00000338154|PHF8;nc|ENSG00000172943|Q9UPP1|PHF8;ENST00000490635.1_1_X:54026257-54040884:-|nuORF	nc|ENSG00000172943|Q9UPP1-5|PHF8	nc|ENSG00000172943|Q9UPP1-5|PHF8	MULTI-SECPEP	A375_MHC_IP_R2	2	575.734619140625	2	575.334956	1148.65536	-0.46472	-0.00026737	-0.044326	-2.5502E-05	-0.50905	-0.00029287	575.33482269517	23.751	0.30512	24.381	24.232	24.537	0.63014					7	5	2	0	0	0	0.67471	1	7722	7722		22.658	12.584	1	2283400			23995	7751	17428	17553	23494	23494					0.0869767643148407
KAYEPSSKLE	10	Unmodified	_KAYEPSSKLE_					0	0	0			REV__tr|U7SSC8|U7SSC8_FUSNUPolaraminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01586PE=3SV=1	REV__tr|U7SSC8|U7SSC8_FUSNUPolaraminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01586PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	385.2598571777344	3	384.536278	1150.587	0.072571	2.7906E-05	0.58385	0.00022451	0.65642	0.00025242	384.5362808879191	24.125	0.65836	24.125	23.889	24.547	0					27	12	3	0	0	0	0.8866	1	6941	6941		6.2344	0	1	18378000	+		23996	28423	17429	17554	23495	23495					0.01773387060939058
KAYERGISL	9	Unmodified	_KAYERGISL_					0	0	0		ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1742553710938	2	518.792924	1035.57129	-0.71609	-0.0003715	-0.30493	-0.0001582	-1.021	-0.0005297	518.7928480712818	30.608	0.70665	31.327	30.962	31.669	0.71857					22	13	2	0	0	0	0.23894	1	10722	10722		40.239	7.4535	1	5160800			23997	1640	17430	17555	23496	23496					0.05493145334571636
KAYNQTHLY	9	Unmodified	_KAYNQTHLY_					0	0	0		ENSG00000075213|ENST00000265362|SEMA3A	ENSG00000075213|ENST00000265362|SEMA3A	ENSG00000075213|ENST00000265362|SEMA3A	MULTI-MSMS	A375_MHC_IP_R1	1	569.6874389648438	2	569.288005	1136.56146	-0.59356	-0.00033791	-0.10196	-5.8045E-05	-0.69552	-0.00039595	569.2879402261349	23.767	0.35568	23.767	23.635	23.991	0					12	6	3	0	0	0	0.0090499	1	6627	6627		100.09	43.914	1	6440900			23998	1602	17431	17556	23497	23497					-0.0013604267080609134
KAYPKRPLL	9	Unmodified	_KAYPKRPLL_					0	0	0		ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24	ENST00000555762.1_1_14:94524146-94547480:-|nuORF	ENST00000555762.1_1_14:94524146-94547480:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	543.74462890625	2	543.345126	1084.6757	-0.77243	-0.00041969	-0.062399	-3.3904E-05	-0.83483	-0.0004536	543.3450498105052	24.255	0.60635	24.255	23.991	24.597	0					26	11	3	0	0	0	0.12748	1	6831	6831		58.679	36.932	1	14227000			23999	1934	17432	17557	23498	23498					0.1367489188194213
KAYPKRPLL	9	Unmodified	_KAYPKRPLL_					0	0	0		ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24	ENST00000555762.1_1_14:94524146-94547480:-|nuORF	ENST00000555762.1_1_14:94524146-94547480:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	362.9656982421875	3	362.565843	1084.6757	-0.01429	-5.1809E-06	-0.4547	-0.00016486	-0.46899	-0.00017004	362.56564345376296	24.27	0.80895	24.27	23.94	24.749	0					55	15	5	0	0	0	0.13845	2	6980	6947;6980		43.772	19.802	1	201720000			24000	1934	17432	17557	23499;23500	23500					0.1367489188194213
KAYPKRPLL	9	Unmodified	_KAYPKRPLL_					0	0	0		ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24	ENST00000555762.1_1_14:94524146-94547480:-|nuORF	ENST00000555762.1_1_14:94524146-94547480:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	362.9647521972656	3	362.565843	1084.6757	-0.41378	-0.00015002	-0.26596	-9.6428E-05	-0.67974	-0.00024645	362.5657126637008	23.424	1.1173	24.054	23.726	24.843	0.63014					69	21	5	0	0	0	0.012843	2	7486	7486;7646		92.653	50.814	1	160170000			24001	1934	17432	17557	23501;23502	23501					0.1367489188194213
KAYPKRPLL	9	Unmodified	_KAYPKRPLL_					0	0	0		ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24	ENST00000555762.1_1_14:94524146-94547480:-|nuORF	ENST00000555762.1_1_14:94524146-94547480:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	543.7444458007812	2	543.345126	1084.6757	-1.1155	-0.00060608	0.0080516	4.3748E-06	-1.1074	-0.0006017	543.3451293041475	23.478	0.65826	24.109	23.726	24.384	0.63015					23	12	3	0	0	0	0.095851	1	7549	7549		65.235	49.388	1	12143000			24002	1934	17432	17557	23503	23503					0.1367489188194213
KAYPKRPLL	9	Unmodified	_KAYPKRPLL_					0	0	0		ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24	ENST00000555762.1_1_14:94524146-94547480:-|nuORF	ENST00000555762.1_1_14:94524146-94547480:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	543.345126	1084.6757	-1.0677	-0.00058011	0.58732	0.00031912	-0.48033	-0.00026099	543.3456829531403	23.901	0.20523	24.531	24.435	24.64	0.63014	0.13832	0.00064957	NaN	58.679	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1317500			24003	1934	17432	17557							0.1367489188194213
KCENKVINLM	10	Unmodified	_KCENKVINLM_					0	0	0			REV__tr|U7STV5|U7STV5_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01203PE=4SV=1	REV__tr|U7STV5|U7STV5_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01203PE=4SV=1	MSMS	A375_MHC_IP_R2	2	596.2364501953125	2	596.314851	1190.61515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.024	1	84.764	84.264	85.264	0.73962								0	0	0	0.14925	1	31939	31939		19.257	2.1441	1		+		24004	28511	17433	17558	23504	23504					0.02746670445003474
KCGLQVLKVY	10	Unmodified	_KCGLQVLKVY_					0	0	0		ENST00000489652.1_1_3:122255723-122264321:-|nuORF	ENST00000489652.1_1_3:122255723-122264321:-|nuORF	ENST00000489652.1_1_3:122255723-122264321:-|nuORF	MSMS	A375_MHC_IP_R2	2	384.2488708496094	3	384.22661	1149.658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.732	1	20.342	19.842	20.842	0.61029								0	0	0	0.15438	1	6084	6084		6.6304	1.3335	1				24005	12637	17434	17559	23505	23505					0.08915808564779582
KCHTCWPAY	9	Unmodified	_KCHTCWPAY_					0	0	0			REV__nc|ENSG00000185615|Q13087-2|PDIA2	REV__nc|ENSG00000185615|Q13087-2|PDIA2	MSMS	A375_MHC_IP_R2	2	370.20941162109375	3	370.161612	1107.46301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.264	1	71.999	71.499	72.499	0.73421								0	0	0	0.15486	1	27029	27029		2.4985	0	1		+		24006	21903	17435	17560	23506	23506					-0.08642685511858872
KCKHPGGG	8	Unmodified	_KCKHPGGG_					0	0	0			REV__ENSG00000188868|ENST00000293725|ZNF563	REV__ENSG00000188868|ENST00000293725|ZNF563	MULTI-MSMS	A375_MHC_IP_R1	1	783.7929077148438	1	783.393019	782.385742	-0.80703	-0.00063223	0.97414	0.00076313	0.1671	0.00013091	783.3936145013616	143.71	0.4402	143.71	143.45	143.89	0					11	8	2	0	0	0	0.77861	1	55162	55162		0	0	1	2524600	+		24007	22120	17436	17561	23507	23507					-0.014155356658761775
KCKHPGGG	8	Unmodified	_KCKHPGGG_					0	0	0			REV__ENSG00000188868|ENST00000293725|ZNF563	REV__ENSG00000188868|ENST00000293725|ZNF563	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	783.393019	782.385742	-0.80703	-0.00063223	0.97414	0.00076313	0.1671	0.00013091	783.3936145013616	143.71	0.4402	143.71	143.45	143.89	0	-0.028498	-0.00027649	NaN	0	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2524600	+		24008	22120	17436	17561							-0.014155356658761775
KCKHPGGG	8	Unmodified	_KCKHPGGG_					0	0	0			REV__ENSG00000188868|ENST00000293725|ZNF563	REV__ENSG00000188868|ENST00000293725|ZNF563	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	783.393019	782.385742	-0.79417	-0.00062215	1.6734	0.0013109	0.87923	0.00068878	783.3943144463371	143.74	0.40146	143.77	143.49	143.89	0.024414	0.028498	0.00027131	NaN	0	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2911800	+		24009	22120	17436	17561							-0.014155356658761775
KCLELKLDQP	10	Unmodified	_KCLELKLDQP_					0	0	0			REV__INPP5F|p.E103K|1|0.54|ENSG00000198825|chr10:119781763-119781763|G/A|missense_variant	REV__INPP5F|p.E103K|1|0.54|ENSG00000198825|chr10:119781763-119781763|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	396.2557067871094	3	396.221525	1185.64274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.458	1	31.176	30.676	31.676	0.71857								0	0	0	0.15425	1	10707	10707		7.0371	0	1		+		24010	26795	17437	17562	23508	23508					0.057348969769236646
KCLNLPLDV	9	Unmodified	_KCLNLPLDV_					0	0	0		ENSG00000135298|ENST00000370598|ADGRB3;nc|ENSG00000135298|O60242-2|ADGRB3	ENSG00000135298|ENST00000370598|ADGRB3	ENSG00000135298|ENST00000370598|ADGRB3	MSMS	A375_MHC_IP_R1	1	507.7218017578125	2	507.786253	1013.55795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.87	1	129.87	129.37	130.37	0								0	0	0	0.15069	1	49959	49959		20.454	0	1				24011	4665	17438	17563	23509	23509					0.05171571230948757
KCPKVIGVKL	10	Unmodified	_KCPKVIGVKL_					0	0	0		ENST00000481310.1_1_22:41911524-41913329:+|nuORF;ENST00000457251.1_1_22:34986144-34986663:-|nuORF;ENST00000478010.1_1_22:41904038-41912046:+|nuORF;ENSG00000100412|ENST00000216254|ACO2	ENST00000481310.1_1_22:41911524-41913329:+|nuORF	ENST00000481310.1_1_22:41911524-41913329:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	362.3006286621094	3	362.235217	1083.68382	-0.41582	-0.00015063	0.14379	5.2086E-05	-0.27203	-9.8541E-05	362.2352333362411	24.146	0.25467	24.79	24.602	24.857	0.64368					6	4	2	0	0	0	0.93733	1	7909	7909		3.0723	3.0723	1	4485000			24012	2176	17439	17564	23510	23510					0.14532702807036912
KCRKVSGG	8	Unmodified	_KCRKVSGG_					0	0	0		ENST00000590054.5_1_19:11457292-11462950:+|nuORF	ENST00000590054.5_1_19:11457292-11462950:+|nuORF	ENST00000590054.5_1_19:11457292-11462950:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	417.57208251953125	2	417.734354	833.454156	-0.32082	-0.00013402	1.288	0.00053803	0.96715	0.00040401	417.73489188391375	58.084	0.35122	58.833	58.629	58.98	0.74894					10	6	2	0	0	0	0.77842	1	22026	22026		0.69038	0	1	759310			24013	13780	17440	17565	23511	23511					0.030767089139771997
KCSPQRLRQ	9	Unmodified	_KCSPQRLRQ_					0	0	0			REV__nc|ENSG00000091592|Q9C000-5|NLRP1	REV__nc|ENSG00000091592|Q9C000-5|NLRP1	MULTI-SECPEP	A375_MHC_IP_R1	1	373.2685852050781	3	372.541592	1114.60295	0.13787	5.1364E-05	-0.96618	-0.00035994	-0.82831	-0.00030858	372.54136467187607	39.567	0.76004	39.567	39.34	40.1	0					22	14	2	0	0	0	0.69507	1	13580	13580		13.615	2.7159	1	10825000	+		24014	16953	17441	17566	23512	23512					0.05022814816857135
KCSREVATRR	10	Unmodified	_KCSREVATRR_					0	0	0			REV__ENST00000508973.5_1_5:21459626-21473494:+|nuORF	REV__ENST00000508973.5_1_5:21459626-21473494:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	402.60882568359375	3	402.555901	1204.64587	-0.37291	-0.00015012	-0.42695	-0.00017187	-0.79986	-0.00032199	402.555664866363	38.388	0.40464	39.162	38.997	39.401	0.77451					9	7	2	0	0	0	0.70442	1	14096	14096		10.315	3.2781	1	1420000	+		24015	25588	17442	17567	23513	23513					0.05173584874273729
KCTAHNLME	9	Unmodified	_KCTAHNLME_					0	0	0			REV__ENST00000475978.1_1_1:249106101-249108957:-|nuORF	REV__ENST00000475978.1_1_1:249106101-249108957:-|nuORF	MSMS	A375_MHC_IP_R2	2	523.6507568359375	2	523.741519	1045.46849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.979	1	86.712	86.212	87.212	0.733								0	0	0	0.15486	1	32697	32697		9.3831	0.78985	1		+		24016	21326	17443	17568	23514	23514					-0.052430067200475605
KCVPDCSSP	9	Unmodified	_KCVPDCSSP_					0	0	0			REV__CTTNBP2|p.P1300S|1|0.05|ENSG00000077063|chr7:117728246-117728246|G/A|missense_variant	REV__CTTNBP2|p.P1300S|1|0.05|ENSG00000077063|chr7:117728246-117728246|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	468.130859375	2	468.201696	934.388838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.336	1	74.071	73.571	74.571	0.73541								0	0	0	0.14677	1	27836	27836		26.884	9.9414	1		+		24017	15935	17444	17569	23515	23515					-0.08098073394057792
KCVRILKQF	9	Unmodified	_KCVRILKQF_					0	0	0		ENSG00000101945|ENST00000376687|SUV39H1;nc|ENSG00000101945|O43463-2|SUV39H1	ENSG00000101945|ENST00000376687|SUV39H1	ENSG00000101945|ENST00000376687|SUV39H1	MSMS	A375_MHC_IP_R2	2	378.958251953125	3	378.898716	1133.67432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.58	1	23.21	22.71	23.71	0.63014								0	0	0	0.15486	1	7181	7181		4.1895	0.90819	1				24018	2337	17445	17570	23516	23516					0.11282934521523202
KCWEKKRAE	9	Unmodified	_KCWEKKRAE_					0	0	0			REV__tr|U7T6K0|U7T6K0_FUSNUMotA/TolQ/ExbBprotonchanneldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00269PE=4SV=1	REV__tr|U7T6K0|U7T6K0_FUSNUMotA/TolQ/ExbBprotonchanneldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00269PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	589.712158203125	2	589.310958	1176.60736	-0.13306	-7.8415E-05	1.812	0.0010678	1.6789	0.00098942	589.3119808539973	127.95	1.0125	127.95	127.67	128.68	0					33	19	2	0	0	0	0.73804	1	49297	49297		3.5965	0.60125	1	16100000	+		24019	28864	17446	17571	23517	23517					0.026122792397700323
KDACKKLVP	9	Unmodified	_KDACKKLVP_					0	0	0			REV__OGDHL|p.Y527C|1|0.11|ENSG00000197444|chr10:49745393-49745393|T/C|missense_variant	REV__OGDHL|p.Y527C|1|0.11|ENSG00000197444|chr10:49745393-49745393|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	1001.81982421875	1	1001.58121	1000.57394	0.21589	0.00021623	-4.4225	-0.0044295	-4.2066	-0.0042132	1001.5774864741215	114.3	0.20225	115.01	114.88	115.08	0.70985					5	3	2	0	0	0	0.76827	1	43072	43072		3.5965	0	1	2536400	+		24020	27641	17447	17572	23518	23518					0.07367277467869826
KDAEKIRELLR	11	Unmodified	_KDAEKIRELLR_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-2|KDM3B;nc|ENSG00000120733|Q7LBC6-3|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-MSMS	A375_MHC_IP_R2	2	686.30859375	2	685.90935	1369.80415	-0.67139	-0.00046051	-0.95676	-0.00065625	-1.6282	-0.0011168	685.9086286889194	130.46	0.25313	130.68	130.5	130.75	0.2142					6	4	2	0	0	0	0.73698	1	51300	51300		4.897	1.9018	1	9226000			24021	3686	17448	17573	23519	23519					0.1340378233435331
KDAETNEAIY	10	Unmodified	_KDAETNEAIY_					0	0	0		nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;ENSG00000174373|ENST00000680220|RALGAPA1;ENST00000554704.5_1_14:36176787-36221314:-|nuORF;ENST00000443361.1_1_9:108283251-108284913:+|nuORF;ENST00000554652.5_1_14:36147090-36221314:-|nuORF;nc|ENSG00000174373|Q6GYQ0-3|RALGAPA1	nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1	nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1	MULTI-MSMS	A375_MHC_IP_R1	1	577.6727294921875	2	577.272218	1152.52988	0.035505	2.0496E-05	0.8195	0.00047307	0.855	0.00049357	577.2725885601945	42.774	0.60802	42.774	42.487	43.095	0					29	11	4	0	0	0	0.69306	1	14821	14821		13.906	0.39817	1	5861600			24022	7873	17449	17574	23520	23520					-0.04028080215448426
KDAKKIKKGKK	11	Unmodified	_KDAKKIKKGKK_					0	0	0		CYLC2|p.E266K|1|0.15|ENSG00000155833|chr9:103005427-103005427|G/A|missense_variant	CYLC2|p.E266K|1|0.15|ENSG00000155833|chr9:103005427-103005427|G/A|missense_variant	CYLC2|p.E266K|1|0.15|ENSG00000155833|chr9:103005427-103005427|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	636.3684692382812	2	636.429722	1270.84489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.19	1	124.52	124.02	125.02	0.32969								0	0	0	0.16273	1	47946	47946		4.5289	1.2476	1				24023	692	17450	17575	23521	23521					0.22030168444644005
KDALQKQRE	9	Unmodified	_KDALQKQRE_					0	0	0		ENSG00000226650|ENST00000435029|KIF4B;nc|ENSG00000090889|O95239-2|KIF4A;ENSG00000090889|ENST00000374403|KIF4A	ENSG00000226650|ENST00000435029|KIF4B;ENSG00000090889|ENST00000374403|KIF4A	ENSG00000226650|ENST00000435029|KIF4B	MULTI-MSMS	A375_MHC_IP_R2	2	372.5768737792969	3	372.543767	1114.60947	0.18715	6.972E-05	-0.11079	-4.1274E-05	0.076356	2.8446E-05	372.87925614703454	23.75	0.30512	24.38	24.232	24.537	0.63014					6	5	2	0	0	0	0.70902	1	7734	7734		6.1918	0	1	1440000			24024	9706;1962	17451	17576	23522	23522					0.05675031249234053
KDAVTTILFM	10	Unmodified	_KDAVTTILFM_					0	0	0			REV__ENST00000535379.1_1_11:114107968-114121274:+|nuORF	REV__ENST00000535379.1_1_11:114107968-114121274:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	379.5959167480469	3	380.210737	1137.61038	-0.25975	-9.876E-05	3.4504	0.0013119	3.1907	0.0012131	380.21194967629435	24.257	0.2026	24.901	24.755	24.958	0.64368					5	3	2	0	0	0	0.92227	1	7950	7950		7.9454	0	1	2133100	+		24025	25899	17452	17577	23523	23523					0.04708109573925867
KDAYMFWW	8	Unmodified	_KDAYMFWW_					0	0	0		ENSG00000121064|ENST00000262288|SCPEP1;nc|ENSG00000121064|Q9HB40-2|SCPEP1;ENST00000573823.5_1_17:55055520-55064652:+|nuORF;ENST00000571345.5_1_17:55055520-55072276:+|nuORF;ENST00000571898.5_1_17:55055520-55072831:+|nuORF	ENSG00000121064|ENST00000262288|SCPEP1	ENSG00000121064|ENST00000262288|SCPEP1	MULTI-SECPEP	A375_MHC_IP_R2	2	383.59625244140625	3	382.840756	1145.50044	-0.4145	-0.00015869	-3.3787	-0.0012935	-3.7932	-0.0014522	382.83920007466577	23.286	0.40451	23.916	23.675	24.079	0.63014					9	7	2	0	0	0	0.972	1	7475	7475		5.7319	1.5423	1	1229200			24026	3706	17453	17578	23524	23524					-0.06649270974617139
KDCRCACEKW	10	Unmodified	_KDCRCACEKW_					0	0	0		ENST00000454579.5_1_2:182756982-182761662:+|nuORF	ENST00000454579.5_1_2:182756982-182761662:+|nuORF	ENST00000454579.5_1_2:182756982-182761662:+|nuORF	MSMS	A375_MHC_IP_R1	1	621.4846801757812	2	621.264835	1240.51512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.46	1	115.46	114.96	115.96	0								0	0	0	0.15353	1	42343	42343		9.3831	2.66	1				24027	12110	17454	17579	23525	23525					-0.09551890160446419
KDDAENYRL	9	Unmodified	_KDDAENYRL_					0	0	0		TFB1M|p.E338K|1|0.36|ENSG00000029639|chr6:155257865-155257865|C/T|missense_variant	TFB1M|p.E338K|1|0.36|ENSG00000029639|chr6:155257865-155257865|C/T|missense_variant	TFB1M|p.E338K|1|0.36|ENSG00000029639|chr6:155257865-155257865|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	374.90850830078125	3	375.184127	1122.53055	0.073609	2.7617E-05	-0.70261	-0.00026361	-0.62901	-0.00023599	375.1837665595014	23.89	0.20275	23.89	23.737	23.94	0					5	3	2	0	0	0	0.69507	1	6603	6603		6.1918	1.4759	1	586330			24028	29331	17455	17580	23526	23526					-0.02581240775725746
KDDDDDDDDD	10	Unmodified	_KDDDDDDDDD_					0	0	0		ENSG00000198912|ENST00000361605|C1orf174;ENST00000486765.5_1_1:3806526-3811957:-|nuORF	ENSG00000198912|ENST00000361605|C1orf174	ENSG00000198912|ENST00000361605|C1orf174	MSMS	A375_MHC_IP_R1	1	591.696533203125	2	591.681284	1181.34801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.721	1	46.721	46.221	47.221	0								0	0	0	0.15596	1	16408	16408		1.4819	0.68827	1				24029	9367	17456	17581	23527	23527					-0.2354050948965778
KDDDKAWEY	9	Unmodified	_KDDDKAWEY_					0	0	0		ENSG00000164190|ENST00000282516|NIPBL;nc|ENSG00000164190|Q6KC79-2|NIPBL	ENSG00000164190|ENST00000282516|NIPBL	ENSG00000164190|ENST00000282516|NIPBL	MULTI-SECPEP	A375_MHC_IP_R1	1	390.2449645996094	3	390.508499	1168.50367	0.40303	0.00015739	-1.1654	-0.00045509	-0.76236	-0.00029771	390.50795238219433	107.72	0.61221	107.72	107.39	108	0					25	11	3	0	0	0	0.73363	1	39486	39486		10.8	3.6978	1	2652200			24030	6800	17457	17582	23528	23528					-0.07384349386916256
KDDFLSKRKAL	11	Unmodified	_KDDFLSKRKAL_					0	0	0			REV__nc|ENSG00000162236|Q13190-3|STX5	REV__nc|ENSG00000162236|Q13190-3|STX5	MULTI-MSMS	A375_MHC_IP_R2	2	661.9783325195312	2	660.885344	1319.75613	-1.2472	-0.00082428	0.22026	0.00014557	-1.027	-0.00067871	660.8854912767825	52.155	0.45776	52.907	52.626	53.083	0.75225					26	8	4	0	0	0	0.73078	1	19643	19643		8.1555	1.0538	1	25703000	+		24031	20241	17458	17583	23529	23529					0.1090470841431852
KDDGPAETNSV	11	Unmodified	_KDDGPAETNSV_					0	0	0			REV__ENSG00000134755|ENST00000280904|DSC2	REV__ENSG00000134755|ENST00000280904|DSC2	MULTI-SECPEP	A375_MHC_IP_R2	2	378.6048278808594	3	378.175409	1131.5044	0.10293	3.8927E-05	-1.8221	-0.00068907	-1.7192	-0.00065015	378.1745372598395	31.09	0.25317	31.808	31.618	31.872	0.71857					7	4	2	0	0	0	0.9836	1	10894	10894		6.2344	3.3911	1	838730	+		24032	18797	17459	17584	23530	23530					-0.05609554737884537
KDDPKFHSY	9	Unmodified	_KDDPKFHSY_					0	0	0		nc|ENSG00000076356|O75051-2|PLXNA2;ENSG00000076356|ENST00000367033|PLXNA2	nc|ENSG00000076356|O75051-2|PLXNA2	nc|ENSG00000076356|O75051-2|PLXNA2	MULTI-MSMS	A375_MHC_IP_R1	1	569.1722412109375	2	568.772188	1135.52982	-0.38325	-0.00021798	0.81717	0.00046478	0.43392	0.0002468	568.7722143890607	47.234	0.71737	47.234	46.749	47.467	0					30	13	4	0	0	0	0.65721	1	16594	16594		10.824	10.824	1	9575200			24033	14481	17460	17585	23531	23531					-0.03252035424748101
KDDPKFHSY	9	Unmodified	_KDDPKFHSY_					0	0	0		nc|ENSG00000076356|O75051-2|PLXNA2;ENSG00000076356|ENST00000367033|PLXNA2	nc|ENSG00000076356|O75051-2|PLXNA2	nc|ENSG00000076356|O75051-2|PLXNA2	MULTI-MSMS	A375_MHC_IP_R2	2	569.1720581054688	2	568.772188	1135.52982	-0.23294	-0.00013249	0.6141	0.00034928	0.38116	0.00021679	568.7721302304851	46.364	0.56011	47.129	46.855	47.416	0.76519					31	10	4	0	0	0	0.58047	1	17334	17334		15.847	5.0233	1	8674200			24034	14481	17460	17585	23532	23532					-0.03252035424748101
KDDPKFHSY	9	Unmodified	_KDDPKFHSY_					0	0	0		nc|ENSG00000076356|O75051-2|PLXNA2;ENSG00000076356|ENST00000367033|PLXNA2	nc|ENSG00000076356|O75051-2|PLXNA2	nc|ENSG00000076356|O75051-2|PLXNA2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	568.772188	1135.52982	-0.38325	-0.00021798	0.81717	0.00046478	0.43392	0.0002468	568.7722143890607	47.234	0.71737	47.234	46.749	47.467	0	0.052681	9.0938E-05	NaN	15.847	30	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9575200			24035	14481	17460	17585							-0.03252035424748101
KDDPKFHSY	9	Unmodified	_KDDPKFHSY_					0	0	0		nc|ENSG00000076356|O75051-2|PLXNA2;ENSG00000076356|ENST00000367033|PLXNA2	nc|ENSG00000076356|O75051-2|PLXNA2	nc|ENSG00000076356|O75051-2|PLXNA2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	568.772188	1135.52982	-0.23294	-0.00013249	0.6141	0.00034928	0.38116	0.00021679	568.7721302304851	46.364	0.56011	47.129	46.855	47.416	0.76519	-0.052681	-0.00014006	NaN	15.847	31	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8674200			24036	14481	17460	17585							-0.03252035424748101
KDDWKWLY	8	Unmodified	_KDDWKWLY_					0	0	0			REV__ENSG00000132793|ENST00000373257|LPIN3	REV__ENSG00000132793|ENST00000373257|LPIN3	MSMS	A375_MHC_IP_R2	2	577.2056884765625	2	577.287474	1152.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.013	1	19.616	19.116	20.116	0.60308								0	0	0	0.16876	1	5765	5765		12.532	0.29089	1		+		24037	18682	17461	17586	23533	23533					-0.009782570397192103
KDEARRMIR	9	Unmodified	_KDEARRMIR_					0	0	0		ENSG00000180921|ENST00000388913|FAM83H	ENSG00000180921|ENST00000388913|FAM83H	ENSG00000180921|ENST00000388913|FAM83H	MULTI-SECPEP	A375_MHC_IP_R2	2	391.5961608886719	3	392.22063	1173.64006	-0.045257	-1.7751E-05	-0.051318	-2.0128E-05	-0.096575	-3.7879E-05	392.2205197293155	43.354	0.50683	44.127	43.926	44.433	0.7724					15	9	3	0	0	0	0.75842	1	16111	16111		5.7834	0	1	2083500			24038	8326	17462	17587	23534	23534					0.0601848636260911
KDEELISLCV	10	Unmodified	_KDEELISLCV_					0	0	0			REV__ENSG00000103275|ENST00000397514|UBE2I	REV__ENSG00000103275|ENST00000397514|UBE2I	MULTI-SECPEP	A375_MHC_IP_R2	2	384.2862243652344	3	383.533768	1147.57948	-0.2466	-9.4581E-05	-3.0698	-0.0011774	-3.3164	-0.001272	383.5322920322327	36.053	0.51064	36.817	36.435	36.946	0.76338					12	9	2	0	0	0	0.91932	1	12964	12964		15.739	9.5468	1	2184500	+		24039	17267	17463	17588	23535	23535					0.01158911469042323
KDEETRKDYDY	11	Unmodified	_KDEETRKDYDY_					0	0	0		ENSG00000059769|ENST00000313525|DNAJC25	ENSG00000059769|ENST00000313525|DNAJC25	ENSG00000059769|ENST00000313525|DNAJC25	MSMS	A375_MHC_IP_R2	2	731.3300170898438	2	731.328253	1460.64195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.174	1	73.909	73.409	74.409	0.73541								0	0	0	0.16302	1	27776	27776		2.9952	0	1				24040	1306	17464	17589	23536	23536					-0.06994270929089907
KDEEWFRS	8	Unmodified	_KDEEWFRS_					0	0	0		nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	MULTI-SECPEP	A375_MHC_IP_R2	2	366.57342529296875	3	366.173451	1095.49852	-0.2264	-8.2902E-05	0.35566	0.00013023	0.12926	4.7332E-05	366.17351990271084	23.273	0.25271	23.903	23.777	24.029	0.63014					10	4	3	0	0	0	0.972	1	7495	7495		9.3831	3.6513	1	4837100			24041	1855	17465	17590	23537	23537					-0.04540608458864881
KDELHWQL	8	Unmodified	_KDELHWQL_					0	0	0			REV__nc|ENSG00000166960|Q5BJE1-3|CCDC178	REV__nc|ENSG00000166960|Q5BJE1-3|CCDC178	MULTI-SECPEP	A375_MHC_IP_R2	2	535.1770629882812	2	534.777274	1067.53999	-0.79981	-0.00042772	-0.26283	-0.00014055	-1.0626	-0.00056827	534.7772575449563	76.666	0.5084	77.406	77.146	77.655	0.74052					19	9	3	0	0	0	0.93661	1	29114	29114		21.747	11.673	1	1637100	+		24042	20722	17466	17591	23538	23538					0.008925723004722386
KDELKTQLY	9	Unmodified	_KDELKTQLY_					0	0	0		ENSG00000100629|ENST00000555265|CEP128;nc|ENSG00000100629|Q6ZU80-1|CEP128	ENSG00000100629|ENST00000555265|CEP128	ENSG00000100629|ENST00000555265|CEP128	MULTI-MSMS	A375_MHC_IP_R2	2	380.2763671875	3	379.876523	1136.60774	0.019671	7.4726E-06	0.0319	1.2118E-05	0.051571	1.9591E-05	379.87653267237243	32.198	1.5771	32.935	32.654	34.232	0.73692					75	30	5	0	0	0	0.65748	1	11660	11660		10.8	0.48427	1	365850000			24043	2205	17467	17592	23539	23539					0.04489977440630355
KDENYQEEDA	10	Unmodified	_KDENYQEEDA_					0	0	0		tr|U7T585|U7T585_FUSNUElectrontransferflavoproteinbetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00164PE=4SV=1	tr|U7T585|U7T585_FUSNUElectrontransferflavoproteinbetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00164PE=4SV=1	tr|U7T585|U7T585_FUSNUElectrontransferflavoproteinbetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00164PE=4SV=1	MSMS	A375_MHC_IP_R1	1	620.7550659179688	2	620.751847	1239.48914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.51	1	114.51	114.01	115.01	0								0	0	0	0.15332	1	41994	41994		10.074	0	1				24044	30015	17468	17593	23540	23540					-0.12102466325723071
KDESLVHKRLR	11	Unmodified	_KDESLVHKRLR_					0	0	0			REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MSMS	A375_MHC_IP_R2	2	461.00439453125	3	460.94052	1379.79973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.69	1	136.8	136.3	137.3	0.11134								0	0	0	0.16352	1	53680	53680		0.40827	0.26837	1		+		24045	28544	17469	17594	23541	23541					0.12502317911435057
KDEVLNSRS	9	Unmodified	_KDEVLNSRS_					0	0	0		ENST00000609075.5_1_2:70310793-70312954:-|nuORF;ENST00000442040.5_1_2:70278378-70312954:-|nuORF;ENST00000439670.6_1_2:70286789-70313441:-|nuORF	ENST00000609075.5_1_2:70310793-70312954:-|nuORF	ENST00000609075.5_1_2:70310793-70312954:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	523.7029418945312	2	524.275095	1046.53564	-0.49836	-0.00026128	3.8642	0.0020259	3.3658	0.0017646	524.276867791735	124.65	0.30196	124.98	124.75	125.05	0.32969					7	5	2	0	0	0	0.77901	1	48170	48170		9.3831	1.473	1	10163000			24046	11964	17470	17595	23542	23542					0.01423063086917864
KDFAEETYLRY	11	Unmodified	_KDFAEETYLRY_					0	0	0			REV__nc|ENSG00000101452|Q9H5Z1-2|DHX35	REV__nc|ENSG00000101452|Q9H5Z1-2|DHX35	MULTI-SECPEP	A375_MHC_IP_R2	2	358.9361877441406	4	359.42795	1433.6827	-0.4563	-0.00016401	-0.22119	-7.9501E-05	-0.67749	-0.00024351	359.4279090891996	23.869	0.30584	24.499	24.283	24.588	0.63014					10	5	3	0	0	0	0.98748	1	7653	7653		7.0371	3.1912	1	1956600	+		24047	17173	17471	17596	23543	23543					-0.01679884818827304
KDFGVRLESL	10	Unmodified	_KDFGVRLESL_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-SECPEP	A375_MHC_IP_R2	2	389.2937927246094	3	388.552151	1162.63462	-0.42405	-0.00016477	-0.0039495	-1.5346E-06	-0.428	-0.0001663	388.55233980148626	23.728	0.15224	24.358	24.232	24.384	0.63014					4	2	2	0	0	0	0.93566	1	7650	7650		9.7643	5.5747	1	1482000			24048	1262	17472	17597	23544	23544					0.05981086051792772
KDFKLTYIRG	10	Unmodified	_KDFKLTYIRG_					0	0	0		tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	MSMS	A375_MHC_IP_R2	2	620.84814453125	2	620.856055	1239.69756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.18	1	114.89	114.39	115.39	0.70985								0	0	0	0.15353	1	43053	43053		9.3831	2.2814	1				24049	29815	17473	17598	23545	23545					0.08729651839826147
KDFLFSKYF	9	Unmodified	_KDFLFSKYF_					0	0	0			REV__nc|ENSG00000149201|Q6ZN84-3|CCDC81	REV__nc|ENSG00000149201|Q6ZN84-3|CCDC81	MULTI-SECPEP	A375_MHC_IP_R2	2	399.2774963378906	3	398.877975	1193.6121	-0.37833	-0.00015091	-0.60532	-0.00024145	-0.98365	-0.00039236	398.8777226727549	19.938	0.60734	20.548	20.044	20.651	0.61029					24	11	3	0	0	0	0.78719	1	6134	6134		8.9762	7.5211	1	1525500	+		24050	15598	17474	17599	23546	23546					0.02303486654182052
KDFPKPKKPP	10	Unmodified	_KDFPKPKKPP_					0	0	0		ENSG00000198087|ENST00000359314|CD2AP	ENSG00000198087|ENST00000359314|CD2AP	ENSG00000198087|ENST00000359314|CD2AP	MULTI-SECPEP	A375_MHC_IP_R1	1	395.2643127441406	3	394.572886	1180.69683	0.03949	1.5582E-05	0.1022	4.0327E-05	0.14169	5.5908E-05	394.90724802351247	20.104	0.55766	20.104	19.827	20.384	0					20	10	2	0	0	0	0.93999	1	5045	5045		4.7159	1.1289	1	3471600			24051	9227	17475	17600	23547	23547					0.1137085719078641
KDFQSPRRQTP	11	Unmodified	_KDFQSPRRQTP_					0	0	0			REV__ENSG00000183807|ENST00000368557|FAM162B	REV__ENSG00000183807|ENST00000368557|FAM162B	MULTI-SECPEP	A375_MHC_IP_R1	1	454.3094482421875	3	453.909109	1358.7055	-0.26817	-0.00012173	0.83665	0.00037976	0.56848	0.00025804	453.9094195896119	28.794	0.55652	28.794	28.491	29.047	0					20	10	3	0	0	0	0.99332	1	8954	8954		11.065	5.6626	1	3573800	+		24052	21780	17476	17601	23548	23548					0.040491790893156576
KDFQYVDR	8	Unmodified	_KDFQYVDR_					0	0	0		nc|ENSG00000063245|Q9Y6I3-3|EPN1;ENSG00000063245|ENST00000270460|EPN1;nc|ENSG00000063245|Q9Y6I3-1|EPN1	nc|ENSG00000063245|Q9Y6I3-3|EPN1	nc|ENSG00000063245|Q9Y6I3-3|EPN1	MULTI-SECPEP	A375_MHC_IP_R2	2	357.913330078125	3	357.513696	1069.51926	-0.55718	-0.0001992	0.063297	2.263E-05	-0.49389	-0.00017657	357.51371788474114	22.883	0.76398	23.513	23.265	24.029	0.63014					22	14	2	0	0	0	0.90775	1	7281	7281		11.495	4.8643	1	5065300			24053	1340	17477	17602	23549	23549					-0.012720180792030078
KDFRFFPRTWC	11	Unmodified	_KDFRFFPRTWC_					0	0	0		ENST00000376681.7_1_17:46840236-46881289:-|nuORF;nc|ENSG00000170703|Q8N841-3|TTLL6;ENSG00000170703|ENST00000393382|TTLL6	ENST00000376681.7_1_17:46840236-46881289:-|nuORF	ENST00000376681.7_1_17:46840236-46881289:-|nuORF	MSMS	A375_MHC_IP_R2	2	751.6378784179688	2	751.871714	1501.72887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.85	1	118.46	117.96	118.96	0.60909								0	0	0	0.16223	1	44663	44663		7.1017	3.8204	1				24054	7532	17478	17603	23550	23550					-0.0019209839772429405
KDFVRIVLQ	9	Unmodified	_KDFVRIVLQ_					0	0	0		ENSG00000130997|ENST00000511885|POLN;nc|ENSG00000130997|Q7Z5Q5-3|POLN;ENST00000515357.5_1_4:2158125-2230958:-|nuORF;ENST00000514858.5_1_4:2172840-2209821:-|nuORF	ENSG00000130997|ENST00000511885|POLN	ENSG00000130997|ENST00000511885|POLN	MULTI-MSMS	A375_MHC_IP_R2	2	373.6291198730469	3	373.229119	1116.66553	0.11757	4.3882E-05	0.054712	2.042E-05	0.17229	6.4302E-05	373.2289676576449	19.426	0.65831	20.029	19.733	20.392	0.60308					22	12	3	0	0	0	0.73804	1	5998	5998		2.086	0	1	1485100			24055	4298	17479	17604	23551	23551					0.11186284156701731
KDGDKISIKQS	11	Unmodified	_KDGDKISIKQS_					0	0	0			REV__ENST00000554659.5_1_14:68113948-68114011:-|nuORF	REV__ENST00000554659.5_1_14:68113948-68114011:-|nuORF	MSMS	A375_MHC_IP_R2	2	406.9521484375	3	406.894465	1217.66157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.111	1	35.874	35.374	36.374	0.76338								0	0	0	0.14602	1	12711	12711		23.016	5.9671	1		+		24056	26080	17480	17605	23552	23552					0.06144149872329763
KDGLVPRAKPR	11	Unmodified	_KDGLVPRAKPR_					0	0	0		CON__P19013	CON__P19013	CON__P19013	MSMS	A375_MHC_IP_R1	1	618.8826293945312	2	618.880396	1235.74624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.23	1	123.23	122.73	123.73	0								0	0	0	0.16265	1	46020	46020		4.897	0.95262	1			+	24057	598	17481	17606	23553	23553					0.1377956519959298
KDGRLRAA	8	Unmodified	_KDGRLRAA_					0	0	0		nc|ENSG00000081026|Q5TCQ9-3|MAGI3;nc|ENSG00000081026|Q5TCQ9-2|MAGI3;ENSG00000081026|ENST00000307546|MAGI3;nc|ENSG00000081026|Q5TCQ9-1|MAGI3	nc|ENSG00000081026|Q5TCQ9-3|MAGI3	nc|ENSG00000081026|Q5TCQ9-3|MAGI3	MULTI-SECPEP	A375_MHC_IP_R1	1	444.16473388671875	2	443.764501	885.514448	0.085942	3.8138E-05	-0.011604	-5.1494E-06	0.074338	3.2988E-05	443.76447116978153	106	1.9362	106	105.1	107.03	0					53	37	2	0	0	0	0.972	1	38982	38982		0	0	1	6660900			24058	1729	17482	17607	23554	23554					0.06711142568678952
KDHKEKEKQR	10	Unmodified	_KDHKEKEKQR_					0	0	0		ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	MULTI-MSMS	A375_MHC_IP_R1	1	663.7672729492188	2	663.36785	1324.72115	-0.89168	-0.00059151	0.71426	0.00047382	-0.17742	-0.0001177	663.3681800558255	142.11	0.45782	142.11	141.78	142.24	0					12	8	2	0	0	0	0.72014	1	54567	54567		3.2813	0.28607	1	963830			24059	8712	17483	17608	23555	23555					0.07177465606355327
KDHKEKEKQR	10	Unmodified	_KDHKEKEKQR_					0	0	0		ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	663.36785	1324.72115	-0.66493	-0.00044109	0.42922	0.00028473	-0.2357	-0.00015636	663.368179217455	142.15	0.30344	142.18	142.03	142.33	0.030731	0.036638	-0.00016843	NaN	3.2813	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	693570			24060	8712	17483	17608							0.07177465606355327
KDIEFTMS	8	Unmodified	_KDIEFTMS_					0	0	0			REV__tr|U7SUH3|U7SUH3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01420PE=4SV=1	REV__tr|U7SUH3|U7SUH3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01420PE=4SV=1	MSMS	A375_MHC_IP_R2	2	485.6553649902344	2	485.731143	969.447733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.04	1	55.791	55.291	56.291	0.75075								0	0	0	0.16876	1	20784	20784		25.399	4.9457	1		+		24061	28559	17484	17609	23556	23556					-0.03821273828066296
KDIGVINSLKE	11	Unmodified	_KDIGVINSLKE_					0	0	0			REV__tr|U7SZH8|U7SZH8_FUSNUHK97gp10familyphageproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00876PE=4SV=1	REV__tr|U7SZH8|U7SZH8_FUSNUHK97gp10familyphageproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00876PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	609.1016235351562	2	608.350803	1214.68705	-0.68177	-0.00041475	0.15762	9.589E-05	-0.52415	-0.00031886	608.3507535774452	141.92	1.5298	141.92	140.86	142.38	0					62	29	3	0	0	0	0.99581	1	54353	54353		4.1895	2.7076	1	4408700	+		24062	28648	17485	17610	23557	23557					0.088296243947525
KDIIRFLQQRL	11	Unmodified	_KDIIRFLQQRL_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.E2519Dfs*5|1|0.21|ENSG00000188906|chr12:40367737-40367738|-/CTTAG|frameshift_variant;ENST00000479187.5_1_12:40692272-40758932:+|nuORF	ENSG00000188906|ENST00000298910|LRRK2	ENSG00000188906|ENST00000298910|LRRK2	MSMS	A375_MHC_IP_R2	2	715.435791015625	2	715.435535	1428.85652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.338	1	91.07	90.57	91.57	0.7318								0	0	0	0.16337	1	34372	34372		1.1933	0	1				24063	8945	17486	17611	23558	23558					0.1592436546798126
KDILKLIRHHY	11	Unmodified	_KDILKLIRHHY_					0	0	0		nc|ENSG00000064933|P54277-3|PMS1;ENSG00000064933|ENST00000441310|PMS1;nc|ENSG00000064933|P54277-4|PMS1;ENST00000421722.5_1_2:190656520-190720594:+|nuORF;nc|ENSG00000064933|P54277-2|PMS1	nc|ENSG00000064933|P54277-3|PMS1	nc|ENSG00000064933|P54277-3|PMS1	MSMS	A375_MHC_IP_R2	2	718.3756103515625	2	718.430253	1434.84595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.37	1	112.11	111.61	112.61	0.73692								0	0	0	0.16249	1	41994	41994		5.7319	0	1				24064	14471	17487	17612	23559	23559					0.1459238281358921
KDINFDIKEGE	11	Unmodified	_KDINFDIKEGE_					0	0	0		tr|U7T1W1|U7T1W1_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00605PE=3SV=1	tr|U7T1W1|U7T1W1_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00605PE=3SV=1	tr|U7T1W1|U7T1W1_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00605PE=3SV=1	MSMS	A375_MHC_IP_R1	1	654.3954467773438	2	654.327524	1306.6405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.66	1	110.66	110.16	111.16	0								0	0	0	0.16258	1	40573	40573		5.2969	0	1				24065	29912	17488	17613	23560	23560					-0.0005586022721217887
KDIYREDQSK	10	Unmodified	_KDIYREDQSK_					0	0	0			REV__nc|ENSG00000153956|P54289-4|CACNA2D1	REV__nc|ENSG00000153956|P54289-4|CACNA2D1	MULTI-MSMS	A375_MHC_IP_R1	1	428.6055603027344	3	427.88597	1280.63608	-0.1555	-6.6538E-05	0.62638	0.00026802	0.47087	0.00020148	427.88623520282954	23.15	0.71102	23.15	22.924	23.635	0					30	13	3	0	0	0	0.67901	1	6420	6420		14.957	0.78643	1	88990000	+		24066	19858	17489	17614	23561	23561					0.006986753498722464
KDKAIKKFII	10	Unmodified	_KDKAIKKFII_					0	0	0		ENST00000480579.2_1_8:119774141-119774438:-|nuORF	ENST00000480579.2_1_8:119774141-119774438:-|nuORF	ENST00000480579.2_1_8:119774141-119774438:-|nuORF	MSMS	A375_MHC_IP_R1	1	602.3834228515625	2	602.394816	1202.77508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.017	1	62.017	61.517	62.517	0								0	0	0	0.15549	1	22384	22384		2.9952	1.5133	1				24067	12502	17490	17615	23562	23562					0.18180289776023528
KDKEVTIEVS	10	Unmodified	_KDKEVTIEVS_					0	0	0			REV__ENSG00000099864|ENST00000338448|PALM	REV__ENSG00000099864|ENST00000338448|PALM	MULTI-SECPEP	A375_MHC_IP_R2	2	573.6953735351562	2	574.313886	1146.61322	-0.4701	-0.00026999	0.92373	0.00053051	0.45363	0.00026052	574.3143581253737	38.89	0.30743	39.664	39.504	39.812	0.77451					9	5	2	0	0	0	0.92199	1	14294	14294		12.241	5.5175	1	2035800	+		24068	17030	17491	17616	23563	23563					0.04577656232436311
KDKGIEQIIAS	11	Unmodified	_KDKGIEQIIAS_					0	0	0			REV__ZFHX4|p.G324E|1|0.23|ENSG00000091656|chr8:76705059-76705059|G/A|missense_variant	REV__ZFHX4|p.G324E|1|0.23|ENSG00000091656|chr8:76705059-76705059|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	601.7425537109375	2	601.342978	1200.6714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.35	1	126.65	126.15	127.15	0.2951								0	0	0	0.14829	1	49427	49427		21.59	5.441	1		+		24069	29018	17492	17617	23564	23564					0.07909337877731559
KDKIKRWP	8	Unmodified	_KDKIKRWP_					0	0	0			REV__ENSG00000146216|ENST00000259750|TTBK1	REV__ENSG00000146216|ENST00000259750|TTBK1	MULTI-MSMS	A375_MHC_IP_R1	1	357.44915771484375	3	357.553826	1069.63965	-0.0082899	-2.9641E-06	0.1979	7.0758E-05	0.18961	6.7794E-05	357.55381797114586	19.785	1.1672	19.785	19.42	20.587	0					33	22	3	0	0	0	0.72788	1	5024	5024		26.268	13.226	1	13965000	+		24070	19522	17493	17618	23565	23565					0.10761434705068496
KDKIRYIGLSH	11	Unmodified	_KDKIRYIGLSH_					0	0	0		tr|U7T3B9|U7T3B9_FUSNUCompetenceproteinComECOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00372PE=4SV=1	tr|U7T3B9|U7T3B9_FUSNUCompetenceproteinComECOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00372PE=4SV=1	tr|U7T3B9|U7T3B9_FUSNUCompetenceproteinComECOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00372PE=4SV=1	MSMS	A375_MHC_IP_R2	2	665.3863525390625	2	665.385511	1328.75647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.29	1	120.83	120.33	121.33	0.5321								0	0	0	0.15694	1	45894	45894		16.149	5.3496	1				24071	29961	17494	17619	23566	23566					0.10524128134170496
KDKKEKKKEKH	11	Unmodified	_KDKKEKKKEKH_					0	0	0		ENSG00000141867|ENST00000679869|BRD4;nc|ENSG00000141867|O60885-2|BRD4;nc|ENSG00000141867|O60885-3|BRD4	ENSG00000141867|ENST00000679869|BRD4	ENSG00000141867|ENST00000679869|BRD4	MULTI-MSMS	A375_MHC_IP_R2	2	714.8338623046875	2	713.43045	1424.84635	-0.56239	-0.00040123	-0.85198	-0.00060783	-1.4144	-0.0010091	714.4326064995714	142.35	0.8623	142.38	141.87	142.74	0.030731					48	16	4	0	0	0	0.73897	1	55703	55703		0.35063	0	1	2978800			24072	5275	17495	17620	23567	23567					0.15091757742720802
KDKKEKKQVP	10	Unmodified	_KDKKEKKQVP_					0	0	0			REV__nc|ENSG00000116871|Q3KQU3-2|MAP7D1	REV__nc|ENSG00000116871|Q3KQU3-2|MAP7D1	MULTI-SECPEP	A375_MHC_IP_R1	1	614.1555786132812	2	614.374612	1226.73467	-0.020748	-1.2747E-05	-3.4642	-0.0021283	-3.485	-0.0021411	614.3727789239753	116.31	0.5593	116.31	115.99	116.55	0					14	10	2	0	0	0	0.87163	1	42672	42672		9.3831	0	1	3550800	+		24073	17978	17496	17621	23568	23568					0.13037323385583477
KDKKERPT	8	Unmodified	_KDKKERPT_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MSMS	A375_MHC_IP_R1	1	501.69049072265625	2	501.290548	1000.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.38	1	125.38	124.88	125.88	0								0	0	0	0.16876	1	47684	47684		10.824	0.67336	1				24074	2058	17497	17622	23569	23569					0.06628261191792717
KDKKERPT	8	Unmodified	_KDKKERPT_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	A375_MHC_IP_R2	2	501.6902160644531	2	501.290548	1000.56654	-0.56438	-0.00028292	-0.46843	-0.00023482	-1.0328	-0.00051774	501.2902488811351	124.91	0.50552	125.24	124.95	125.45	0.32969					17	9	2	0	0	0	0.77374	1	48439	48439		13.906	7.1829	1	42433000			24075	2058	17497	17622	23570	23570					0.06628261191792717
KDKKESKKRL	10	Unmodified	_KDKKESKKRL_					0	0	0			REV__nc|ENSG00000038382|O75962-2|TRIO	REV__nc|ENSG00000038382|O75962-2|TRIO	MSMS	A375_MHC_IP_R1	1	630.0554809570312	2	630.393336	1258.77212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.88	1	121.88	121.38	122.38	0								0	0	0	0.15465	1	45296	45296		5.7319	0.43497	1		+		24076	16328	17498	17623	23571	23571					0.1530841465123558
KDKKGTHKNIF	11	Unmodified	_KDKKGTHKNIF_					0	0	0		tr|U7SV28|U7SV28_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrAPE=3SV=1	tr|U7SV28|U7SV28_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrAPE=3SV=1	tr|U7SV28|U7SV28_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrAPE=3SV=1	MSMS	A375_MHC_IP_R1	1	658.5498657226562	2	658.377686	1314.74082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.38	1	106.38	105.88	106.88	0								0	0	0	0.16213	1	39049	39049		7.609	0.88579	1				24077	29786	17499	17624	23572	23572					0.09603841617126818
KDKLLYSV	8	Unmodified	_KDKLLYSV_					0	0	0			REV__ENST00000490936.5_1_X:153577219-153578780:-|nuORF	REV__ENST00000490936.5_1_X:153577219-153578780:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	483.686767578125	2	483.286943	964.559333	-0.64444	-0.00031145	0.37149	0.00017954	-0.27295	-0.00013191	483.2870518726795	67.392	0.46014	67.392	67.143	67.603	0					18	8	3	0	0	0	0.77651	1	24411	24411		26.884	0	1	2350500	+		24078	22238	17500	17625	23573	23573					0.07563528591379054
KDKNQFLSFA	10	Unmodified	_KDKNQFLSFA_					0	0	0			REV__ENST00000465713.5_1_2:219472784-219498591:+|nuORF	REV__ENST00000465713.5_1_2:219472784-219498591:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	399.7469177246094	3	399.880267	1196.61897	-0.34251	-0.00013696	-1.273	-0.00050906	-1.6155	-0.00064602	399.8798740780876	19.597	0.30509	19.597	19.471	19.776	0					9	5	2	0	0	0	0.71364	1	4919	4919		6.1918	1.2948	1	1394400	+		24079	25026	17501	17626	23574	23574					0.028527995347531032
KDKRKSRRRRR	11	Unmodified	_KDKRKSRRRRR_					0	0	0			REV__ENSG00000185736|ENST00000381312|ADARB2	REV__ENSG00000185736|ENST00000381312|ADARB2	MSMS	A375_MHC_IP_R2	2	771.8287963867188	2	771.487822	1540.96109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.81	1	144.83	144.33	145.33	0.021408								0	0	0	0.16353	1	56554	56554		0.35063	0	1		+		24080	21914	17502	17627	23575	23575					0.21224924787884447
KDKRRRHHHK	10	Unmodified	_KDKRRRHHHK_					0	0	0			REV__ENST00000428005.1_1_3:27465485-27525617:-|nuORF	REV__ENST00000428005.1_1_3:27465485-27525617:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	466.98712158203125	3	466.608098	1396.80247	-0.50251	-0.00023447	0.11685	5.4523E-05	-0.38566	-0.00017995	466.6080635550793	132.07	1.412	132.07	131.13	132.54	0					134	27	6	0	0	0	0.95038	1	50713	50713		0.10794	0.10794	1	229880000	+		24081	16309	17503	17628	23576	23576					0.11993630879624106
KDKRRRHHHK	10	Unmodified	_KDKRRRHHHK_					0	0	0			REV__ENST00000428005.1_1_3:27465485-27525617:-|nuORF	REV__ENST00000428005.1_1_3:27465485-27525617:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	700.3096313476562	2	699.408509	1396.80247	-0.64149	-0.00044866	0.24369	0.00017044	-0.3978	-0.00027823	699.4085693712417	132.85	5.3043	133.02	132.59	137.89	0.16487					303	103	5	0	0	0	0.72669	1	52926	52926		0.35063	0.35063	1	654640000	+		24082	16309	17503	17628	23577	23577					0.11993630879624106
KDKRRRHHHK	10	Unmodified	_KDKRRRHHHK_					0	0	0			REV__ENST00000428005.1_1_3:27465485-27525617:-|nuORF	REV__ENST00000428005.1_1_3:27465485-27525617:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	466.608098	1396.80247	-0.61028	-0.00028476	0.37863	0.00017667	-0.23166	-0.00010809	466.60819494029556	131.99	1.4739	132.18	131.14	132.61	0.18953	0.051494	0.00011113	NaN	0.10794	132	28	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	306300000	+		24083	16309	17503	17628							0.11993630879624106
KDKVKEWKKLW	11	Unmodified	_KDKVKEWKKLW_					0	0	0			REV__tr|U7SSL9|U7SSL9_FUSNUDUF4241domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01311PE=4SV=1	REV__tr|U7SSL9|U7SSL9_FUSNUDUF4241domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01311PE=4SV=1	MSMS	A375_MHC_IP_R1	1	744.3352661132812	2	744.440286	1486.86602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.31	1	143.31	142.81	143.81	0								0	0	0	0.16353	1	54980	54980		0.35063	0.043601	1		+		24084	28436	17504	17629	23578	23578					0.14206133753486938
KDKVLVFFK	9	Unmodified	_KDKVLVFFK_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-3|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-SECPEP	A375_MHC_IP_R1	1	375.94989013671875	3	375.233982	1122.68012	0.31485	0.00011814	0.17332	6.5037E-05	0.48818	0.00018318	375.23407956224014	75.738	0.30151	75.738	75.614	75.915	0					8	5	2	0	0	0	0.77396	1	27656	27656		6.6304	1.7334	1	1154700			24085	8815	17505	17630	23579	23579					0.12368356304864392
KDKYQNLQK	9	Unmodified	_KDKYQNLQK_					0	0	0			REV__DYTN|p.N395Rfs*70|1|0.09|ENSG00000232125|chr2:206663283-206663352|TTGATCTGCAAATAATCCCCTCCCTTTGGAACCTTTTCAGTTGAAGAATGGTCAACCTTGTTCCCCACAT/-|frameshift_variant	REV__DYTN|p.N395Rfs*70|1|0.09|ENSG00000232125|chr2:206663283-206663352|TTGATCTGCAAATAATCCCCTCCCTTTGGAACCTTTTCAGTTGAAGAATGGTCAACCTTGTTCCCCACAT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	388.9366760253906	3	388.8839	1163.62987	0.072527	2.8205E-05	-1.8636	-0.00072472	-1.7911	-0.00069651	389.2180946672931	39.505	0.45549	39.505	39.289	39.744	0					10	8	2	0	0	0	0.74597	1	13585	13585		12.175	0	1	2873400	+		24086	16050	17506	17631	23580	23580					0.05460201909022544
KDLEGLWAGF	10	Unmodified	_KDLEGLWAGF_					0	0	0			REV__ENSG00000173166|ENST00000319170|RAPH1	REV__ENSG00000173166|ENST00000319170|RAPH1	MULTI-SECPEP	A375_MHC_IP_R2	2	379.297119140625	3	379.197596	1134.57096	-0.24391	-9.2492E-05	0.0073656	2.793E-06	-0.23655	-8.9699E-05	379.1975065235151	58.509	0.45999	59.258	58.98	59.44	0.74894					10	8	2	0	0	0	0.90513	1	22049	22049		7.4771	0	1	446710	+		24087	21198	17507	17632	23581	23581					0.009057256146888903
KDLFVELCLTV	11	Unmodified	_KDLFVELCLTV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.T2707Mfs*5|1|0.21|ENSG00000196367|chr7:98976664-98976688|CGCTGATGTTGGAGCACCAGGCTTT/-|frameshift_variant;TRRAP|p.I1891Sfs*37|1|0.32|ENSG00000196367|chr7:98953393-98953393|T/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	A375_MHC_IP_R2	2	640.9472045898438	2	640.351957	1278.68936	-0.52281	-0.00033478	-2.438	-0.0015612	-2.9608	-0.001896	640.8519577482144	113.3	0.46155	114.01	113.82	114.28	0.70985					12	8	2	0	0	0	0.72728	1	42804	42804		11.495	1.3441	1	2342700			24088	9031	17508	17633	23582	23582					0.06116336808190681
KDLGLSAV	8	Unmodified	_KDLGLSAV_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	MULTI-MSMS	A375_MHC_IP_R2	2	401.63812255859375	2	401.737086	801.459619	0.092127	3.7011E-05	0.2265	9.0994E-05	0.31863	0.000128	401.7370065981922	46.325	0.61043	47.091	46.805	47.416	0.76519					28	11	4	0	0	0	0.71318	1	17434	17434		30.637	0.41173	1	6143200			24089	3360	17509	17634	23583	23583					0.050947109774256205
KDLIKMAYHN	10	Unmodified	_KDLIKMAYHN_					0	0	0			REV__PRKACA|p.I86Pfs*9|1|0.27|ENSG00000072062|chr19:14102896-14102897|-/AGCGCGGCCGG|frameshift_variant	REV__PRKACA|p.I86Pfs*9|1|0.27|ENSG00000072062|chr19:14102896-14102897|-/AGCGCGGCCGG|frameshift_variant	MSMS	A375_MHC_IP_R2	2	616.7662353515625	2	616.82644	1231.63833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.12	1	107.87	107.37	108.37	0.75436								0	0	0	0.13721	1	40474	40474		31.268	3.6395	1		+		24090	16595	17510	17635	23584	23584					0.03177432554002735
KDLIVKILVVV	11	Unmodified	_KDLIVKILVVV_					0	0	0			REV__nc|ENSG00000137648|Q9NRS4-2|TMPRSS4	REV__nc|ENSG00000137648|Q9NRS4-2|TMPRSS4	MSMS	A375_MHC_IP_R2	2	620.0213623046875	2	619.925949	1237.83735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.89	1	112.62	112.12	113.12	0.72458								0	0	0	0.16337	1	42184	42184		1.1933	0	1		+		24091	19023	17511	17636	23585	23585					0.22794016124339578
KDLKRSKTS	9	Unmodified	_KDLKRSKTS_					0	0	0		ENSG00000183035|ENST00000329312|CYLC1	ENSG00000183035|ENST00000329312|CYLC1	ENSG00000183035|ENST00000329312|CYLC1	MULTI-SECPEP	A375_MHC_IP_R1	1	532.216796875	2	531.81693	1061.61931	-0.64291	-0.00034191	0.23952	0.00012738	-0.40339	-0.00021453	531.8170106171295	119.21	1.3696	119.21	118.47	119.84	0					30	26	2	0	0	0	0.8028	1	43853	43853		0.45834	0	1	13033000			24092	8459	17512	17637	23586	23586					0.0909621925461579
KDLKTRVPI	9	Unmodified	_KDLKTRVPI_					0	0	0			REV__chr7:23351586-23361534|317|16.46|0.49|5.08|-|2|IGF2BP3,IGF2BP3|2	REV__chr7:23351586-23361534|317|16.46|0.49|5.08|-|2|IGF2BP3,IGF2BP3|2	MULTI-SECPEP	A375_MHC_IP_R1	1	356.61444091796875	3	357.229119	1068.66553	0.019776	7.0645E-06	0.05445	1.9451E-05	0.074226	2.6516E-05	357.2290941981341	59.27	0.3045	59.27	59.041	59.346	0					6	5	2	0	0	0	0.79966	1	21302	21302		6.1918	4.1058	1	1145700	+		24093	15775	17513	17638	23587	23587					0.13394284156697722
KDLLACTYAH	10	Unmodified	_KDLLACTYAH_					0	0	0			REV__ENST00000415560.1_1_X:26766465-26767074:+|nuORF	REV__ENST00000415560.1_1_X:26766465-26767074:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	567.6285400390625	2	567.784241	1133.55393	-0.39453	-0.00022401	1.4487	0.00082256	1.0542	0.00059856	567.7830377723785	30.75	0.50417	31.469	31.317	31.821	0.71857					12	9	2	0	0	0	0.91442	1	10833	10833		4.5289	0	1	761800	+		24094	24519	17514	17639	23588	23588					-0.007505182627483009
KDLLKKQIL	9	Unmodified	_KDLLKKQIL_					0	0	0			REV__ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant	REV__ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant	MSMS	A375_MHC_IP_R2	2	366.9396057128906	3	366.91302	1097.71723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.133	1	35.896	35.396	36.396	0.76338								0	0	0	0.15486	1	12721	12721		10.8	1.4164	1		+		24095	20170	17515	17640	23589	23589					0.17228027850592298
KDLLKKQIL	9	Unmodified	_KDLLKKQIL_					0	0	0			REV__ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant	REV__ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant	MSMS	A375_MHC_IP_R2	2	366.9266662597656	3	366.91302	1097.71723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.294	1	38.065	37.565	38.565	0.7709								0	0	0	0.15386	1	13637	13637		15.248	1.6336	1		+		24096	20170	17515	17640	23590	23590					0.17228027850592298
KDLLTHKIL	9	Unmodified	_KDLLTHKIL_					0	0	0		ENSG00000187105|ENST00000553558|HEATR4	ENSG00000187105|ENST00000553558|HEATR4	ENSG00000187105|ENST00000553558|HEATR4	MULTI-MSMS	A375_MHC_IP_R1	1	541.0867919921875	2	540.842416	1079.67028	-0.38145	-0.0002063	-0.011652	-6.3019E-06	-0.3931	-0.0002126	541.3439069218862	107.75	0.50892	107.75	107.54	108.05	0					15	9	2	0	0	0	0.22013	1	39565	39565		36.506	5.2379	1	2739000			24097	8805	17516	17641	23591	23591					0.13363168299474637
KDLLTHKIL	9	Unmodified	_KDLLTHKIL_					0	0	0		ENSG00000187105|ENST00000553558|HEATR4	ENSG00000187105|ENST00000553558|HEATR4	ENSG00000187105|ENST00000553558|HEATR4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	540.842416	1079.67028	-0.90814	-0.00049116	0.12794	6.9194E-05	-0.78021	-0.00042197	540.8423035936886	106.82	0.55801	107.58	107.29	107.85	0.75977	-0.086807	7.2045E-05	NaN	36.506	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1268800			24098	8805	17516	17641							0.13363168299474637
KDLNKEIIDV	10	Unmodified	_KDLNKEIIDV_					0	0	0		tr|U7SNG3|U7SNG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01981PE=4SV=1	tr|U7SNG3|U7SNG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01981PE=4SV=1	tr|U7SNG3|U7SNG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01981PE=4SV=1	MSMS	A375_MHC_IP_R1	1	396.2763977050781	3	396.227444	1185.6605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.424	1	33.424	32.924	33.924	0								0	0	0	0.14739	1	10910	10910		22.775	4.4352	1				24099	29549	17517	17642	23592	23592					0.07509935503412635
KDLPQPQIYLN	11	Unmodified	_KDLPQPQIYLN_					0	0	0		ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	MSMS	A375_MHC_IP_R2	2	665.1769409179688	2	664.864077	1327.7136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.81	1	120.35	119.85	120.85	0.5321								0	0	0	0.16152	1	45660	45660		10.8	0	1				24100	9657	17518	17643	23593	23593					0.06285313286093697
KDLPSLSPY	9	Unmodified	_KDLPSLSPY_					0	0	0		ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728|OAS2	ENSG00000111335|ENST00000392583|OAS2	ENSG00000111335|ENST00000392583|OAS2	MULTI-MSMS	A375_MHC_IP_R1	1	510.69183349609375	2	510.274032	1018.53351	-0.51604	-0.00026332	-0.16746	-8.5448E-05	-0.6835	-0.00034877	510.27381613773133	76.905	1.4751	76.905	76.471	77.946	0					50	28	3	0	0	0	0.32092	1	28186	28186		29.082	3.6823	1	5588600			24101	2986	17519	17644	23594	23594					0.024986343490809304
KDLPSLSPY	9	Unmodified	_KDLPSLSPY_					0	0	0		ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728|OAS2	ENSG00000111335|ENST00000392583|OAS2	ENSG00000111335|ENST00000392583|OAS2	MULTI-MSMS	A375_MHC_IP_R2	2	510.6917724609375	2	510.274032	1018.53351	-0.73718	-0.00037616	-0.24506	-0.00012505	-0.98224	-0.00050121	510.2738175869895	76.061	1.7245	76.801	76.181	77.905	0.74052					63	33	3	0	0	0	0.44024	1	29002	29002		22.736	0	1	5134400			24102	2986	17519	17644	23595	23595					0.024986343490809304
KDLPSLSPY	9	Unmodified	_KDLPSLSPY_					0	0	0		ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728|OAS2	ENSG00000111335|ENST00000392583|OAS2	ENSG00000111335|ENST00000392583|OAS2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	510.274032	1018.53351	-0.51604	-0.00026332	-0.16746	-8.5448E-05	-0.6835	-0.00034877	510.27381613773133	76.905	1.4751	76.905	76.471	77.946	0	0.051784	3.7338E-05	NaN	29.082	50	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5588600			24103	2986	17519	17644							0.024986343490809304
KDLRDRERRMA	11	Unmodified	_KDLRDRERRMA_					0	0	0		nc|ENSG00000071564|P15923-2|TCF3	nc|ENSG00000071564|P15923-2|TCF3	nc|ENSG00000071564|P15923-2|TCF3	MSMS	A375_MHC_IP_R1	1	723.7620239257812	2	723.391333	1444.76811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.529	1	82.529	82.029	83.029	0								0	0	0	0.16265	1	30180	30180		4.897	0.95262	1				24104	14480	17520	17645	23596	23596					0.0635200188582985
KDLSLCIP	8	Unmodified	_KDLSLCIP_					0	0	0			REV__ENSG00000111647|ENST00000279907|BLTP3B	REV__ENSG00000111647|ENST00000279907|BLTP3B	MSMS	A375_MHC_IP_R1	1	444.6441955566406	2	444.746596	887.478639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.176	1	73.176	72.676	73.676	0								0	0	0	0.16876	1	26636	26636		5.2307	0	1		+		24105	17682	17521	17646	23597	23597					0.030399242767998658
KDLSTEYKL	9	Unmodified	_KDLSTEYKL_					0	0	0			REV__tr|U7SZG7|U7SZG7_FUSNUDNAreplicationandrepairproteinRecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recFPE=3SV=1	REV__tr|U7SZG7|U7SZG7_FUSNUDNAreplicationandrepairproteinRecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recFPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	549.6820678710938	2	548.797872	1095.58119	-0.44372	-0.00024351	0.90033	0.0004941	0.45661	0.00025058	548.7980525594949	28.542	0.25347	28.542	28.39	28.643	0					7	4	2	0	0	0	0.56584	1	8851	8851		17.113	10.39	1	1335800	+		24106	28646	17522	17647	23598	23598					0.03722288549283803
KDLTKIRKYFS	11	Unmodified	_KDLTKIRKYFS_					0	0	0		tr|U7SSP5|U7SSP5_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01525PE=4SV=1	tr|U7SSP5|U7SSP5_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01525PE=4SV=1	tr|U7SSP5|U7SSP5_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01525PE=4SV=1	MSMS	A375_MHC_IP_R2	2	699.8085327148438	2	699.908819	1397.80309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.32	1	138.4	137.9	138.9	0.083969								0	0	0	0.16337	1	54245	54245		1.1933	0.735	1				24107	29643	17523	17648	23599	23599					0.12009567965446877
KDLTKIRKYFS	11	Unmodified	_KDLTKIRKYFS_					0	0	0		tr|U7SSP5|U7SSP5_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01525PE=4SV=1	tr|U7SSP5|U7SSP5_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01525PE=4SV=1	tr|U7SSP5|U7SSP5_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01525PE=4SV=1	MSMS	A375_MHC_IP_R2	2	699.8087158203125	2	699.908819	1397.80309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.51	1	141.55	141.05	142.05	0.04216								0	0	0	0.16337	1	55347	55347		1.1933	0.12188	1				24108	29643	17523	17648	23600	23600					0.12009567965446877
KDLVKTKNST	10	Unmodified	_KDLVKTKNST_					0	0	0			REV__ANKRD30A|p.E443D|1|0.17|ENSG00000148513|chr10:37142226-37142226|A/C|missense_variant	REV__ANKRD30A|p.E443D|1|0.17|ENSG00000148513|chr10:37142226-37142226|A/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	567.7291870117188	2	567.32987	1132.64519	-0.51139	-0.00029013	-0.50893	-0.00028873	-1.0203	-0.00057886	567.3295493943837	125.42	1.1574	125.42	124.39	125.55	0					36	22	2	0	0	0	0.94102	1	47508	47508		2.9952	2.9952	1	126890000	+		24109	15408	17524	17649	23601	23601					0.08417068706239661
KDLVVPEKW	9	Unmodified	_KDLVVPEKW_					0	0	0		ENSG00000164109|ENST00000296509|MAD2L1;ENST00000556153.3_1_14:61247109-61247310:+|nuORF;ENST00000504707.1_1_4:120981275-120987923:-|nuORF	ENSG00000164109|ENST00000296509|MAD2L1;ENST00000504707.1_1_4:120981275-120987923:-|nuORF	ENSG00000164109|ENST00000296509|MAD2L1	MULTI-SECPEP	A375_MHC_IP_R1	1	557.7188110351562	2	557.318774	1112.623	-0.50793	-0.00028308	1.9107	0.0010649	1.4028	0.00078181	557.3189359415421	52.194	0.86511	52.194	51.879	52.744	0					37	16	3	0	0	0	0.12938	1	18522	18522		72.59	38.368	1	6338000			24110	6781;12824	17525	17650	23602	23602					0.07118889028447484
KDLVVPEKW	9	Unmodified	_KDLVVPEKW_					0	0	0		ENSG00000164109|ENST00000296509|MAD2L1;ENST00000556153.3_1_14:61247109-61247310:+|nuORF;ENST00000504707.1_1_4:120981275-120987923:-|nuORF	ENSG00000164109|ENST00000296509|MAD2L1;ENST00000504707.1_1_4:120981275-120987923:-|nuORF	ENSG00000164109|ENST00000296509|MAD2L1	MULTI-SECPEP	A375_MHC_IP_R2	2	557.7183837890625	2	557.318774	1112.623	-0.95051	-0.00052974	1.7337	0.0009662	0.78314	0.00043646	557.318801397515	51.417	0.96577	52.169	51.763	52.729	0.75225					44	18	4	0	0	0	0.15736	1	19336	19336		64.927	40.045	1	7130400			24111	6781;12824	17525	17650	23603	23603					0.07118889028447484
KDLYEEEEEG	10	Unmodified	_KDLYEEEEEG_					0	0	0			REV__ENSG00000130202|ENST00000252483|NECTIN2	REV__ENSG00000130202|ENST00000252483|NECTIN2	MULTI-MSMS	A375_MHC_IP_R1	1	620.8009033203125	2	620.764423	1239.51429	0.0024579	1.5258E-06	1.1476	0.00071239	1.1501	0.00071391	620.7660561946997	113.33	1.4713	113.33	112.33	113.8	0					56	28	3	0	0	0	0.70496	2	41483	41483;41653		10.074	3.3508	1	7697800	+		24112	18524	17526	17651	23604;23605	23604					-0.09588411523122886
KDMKLVLIGHS	11	Unmodified	_KDMKLVLIGHS_					0	0	0		nc|ENSG00000118961|Q9H6V9-2|LDAH;ENSG00000118961|ENST00000237822|LDAH;nc|ENSG00000118961|Q9H6V9-3|LDAH	nc|ENSG00000118961|Q9H6V9-2|LDAH	nc|ENSG00000118961|Q9H6V9-2|LDAH	MULTI-SECPEP	A375_MHC_IP_R2	2	621.1671752929688	2	620.857741	1239.70093	-0.50705	-0.00031481	0.073049	4.5353E-05	-0.434	-0.00026945	620.857527073935	112.68	1.4815	113.4	112.15	113.63	0.72459					32	28	2	0	0	0	0.9881	1	42213	42213		13.615	6.0059	1	12605000			24113	3565	17527	17652	23606	23606					0.09066578622196175
KDMNCFCEHC	10	Unmodified	_KDMNCFCEHC_					0	0	0			REV__ENST00000514631.1_1_4:87834454-87834682:-|nuORF	REV__ENST00000514631.1_1_4:87834454-87834682:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	615.3871459960938	2	615.213954	1228.41336	-0.17717	-0.00010899	-0.95837	-0.0005896	-1.1355	-0.00069859	615.7154510004561	117.71	0.25392	117.71	117.56	117.82	0					6	4	2	0	0	0	0.94516	1	43296	43296		3.5965	3.5965	1	2454600	+		24114	25652	17528	17653	23607	23607					-0.19171504574478604
KDNEQALY	8	Unmodified	_KDNEQALY_					0	0	0		nc|ENSG00000198160|Q8N108-16|MIER1;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108-15|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1;nc|ENSG00000198160|Q8N108-19|MIER1	nc|ENSG00000198160|Q8N108-16|MIER1	nc|ENSG00000198160|Q8N108-16|MIER1	MULTI-MSMS	A375_MHC_IP_R1	1	490.6583557128906	2	490.737814	979.461075	0.046549	2.2843E-05	-0.32094	-0.0001575	-0.27439	-0.00013466	490.73757211767054	44.501	0.66408	44.501	44.113	44.777	0					22	12	3	0	0	0	0.61116	1	15510	15510		44.407	4.4497	1	4207400			24115	9234	17529	17654	23608	23608					-0.029476997244842096
KDNEQALY	8	Unmodified	_KDNEQALY_					0	0	0		nc|ENSG00000198160|Q8N108-16|MIER1;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108-15|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1;nc|ENSG00000198160|Q8N108-19|MIER1	nc|ENSG00000198160|Q8N108-16|MIER1	nc|ENSG00000198160|Q8N108-16|MIER1	MULTI-MSMS	A375_MHC_IP_R2	2	491.1374206542969	2	490.737814	979.461075	-0.33914	-0.00016643	0.036357	1.7842E-05	-0.30278	-0.00014859	490.7377577013841	43.825	0.55415	44.594	44.278	44.833	0.7691					28	10	3	0	0	0	0.31691	1	16320	16320		57.471	3.8958	1	4086400			24116	9234	17529	17654	23609	23609					-0.029476997244842096
KDNFYFDV	8	Unmodified	_KDNFYFDV_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-SECPEP	A375_MHC_IP_R2	2	523.6723022460938	2	524.242732	1046.47091	-0.61417	-0.00032198	-0.52843	-0.00027703	-1.1426	-0.000599	524.2421561870442	81.347	0.45293	82.091	81.929	82.382	0.74341					13	8	2	0	0	0	0.972	1	30915	30915		12.532	5.2423	1	1094000			24117	3120	17530	17655	23610	23610					-0.050465117191151876
KDNILTYEV	9	Unmodified	_KDNILTYEV_					0	0	0		tr|U7SV25|U7SV25_FUSNUBiotinbiosynthesisproteinBioCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01102PE=4SV=1	tr|U7SV25|U7SV25_FUSNUBiotinbiosynthesisproteinBioCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01102PE=4SV=1	tr|U7SV25|U7SV25_FUSNUBiotinbiosynthesisproteinBioCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01102PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	548.189208984375	2	547.790047	1093.56554	-1.0127	-0.00055476	0.093347	5.1135E-05	-0.91938	-0.00050363	547.7901236606127	54.342	0.65918	55.093	54.916	55.575	0.75075					17	12	2	0	0	0	0.41434	1	20537	20537		32.786	0	1	2180300			24118	29785	17531	17656	23611	23611					0.022500020322240744
KDNQDFLLY	9	Unmodified	_KDNQDFLLY_					0	0	0			REV__ENSG00000170275|ENST00000320954|CRTAP	REV__ENSG00000170275|ENST00000320954|CRTAP	MULTI-SECPEP	A375_MHC_IP_R1	1	385.6136779785156	3	385.860873	1154.56079	0.19849	7.6588E-05	-2.809	-0.0010839	-2.6105	-0.0010073	386.19368221564645	25.488	0.25588	25.488	25.357	25.613	0					6	4	2	0	0	0	0.74412	1	7431	7431		3.8763	0	1	1709800	+		24119	20981	17532	17657	23612	23612					-0.010308821105127208
KDNVYAII	8	Unmodified	_KDNVYAII_					0	0	0			REV__tr|U7T3G4|U7T3G4_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00266PE=4SV=1	REV__tr|U7T3G4|U7T3G4_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00266PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	467.9769592285156	2	468.263468	934.512382	-0.18961	-8.8787E-05	0.14795	6.9279E-05	-0.041661	-1.9508E-05	468.2633173731846	49.973	0.3589	49.973	49.845	50.204	0					12	6	3	0	0	0	0.50167	1	17721	17721		50.855	0	1	1980800	+		24120	28771	17533	17658	23613	23613					0.04250669040231969
KDPDLKEMT	9	Unmodified	_KDPDLKEMT_					0	0	0		ENSG00000074657|ENST00000591808|ZNF532;ENST00000394628.2_1_10:79493833-79494091:+|nuORF;ENST00000590442.1_1_18:56648660-56651695:+|nuORF;ENST00000592249.5_1_18:56620439-56651695:+|nuORF	ENSG00000074657|ENST00000591808|ZNF532	ENSG00000074657|ENST00000591808|ZNF532	MSMS	A375_MHC_IP_R1	1	359.2763671875	3	359.514597	1075.52196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.948	1	32.948	32.448	33.448	0								0	0	0	0.1493	1	10696	10696		21.59	10.791	1				24121	1588	17534	17659	23614	23614					-0.012779307365462955
KDPHWRFAL	9	Unmodified	_KDPHWRFAL_					0	0	0			REV__DNAJB8|p.L28F|1|0.12|ENSG00000179407|chr3:128463164-128463164|G/A|missense_variant	REV__DNAJB8|p.L28F|1|0.12|ENSG00000179407|chr3:128463164-128463164|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	390.9454650878906	3	390.545331	1168.61416	-0.024124	-9.4214E-06	0.67657	0.00026423	0.65244	0.00025481	390.5456478463147	27.95	1.1606	27.95	27.128	28.288	0					25	22	2	0	0	0	0.68382	1	8573	8573		8.4443	8.4443	1	2955900	+		24122	16021	17535	17660	23615	23615					0.036599601826537764
KDPNVTDGFFV	11	Unmodified	_KDPNVTDGFFV_					0	0	0			REV__ENSG00000089163|ENST00000202967|SIRT4	REV__ENSG00000089163|ENST00000202967|SIRT4	MULTI-MSMS	A375_MHC_IP_R1	1	413.9398193359375	3	413.539911	1237.5979	0.2344	9.6935E-05	0.078176	3.2329E-05	0.31258	0.00012926	413.5398089759479	33.273	0.45767	33.273	33.09	33.547	0					17	8	4	0	0	0	0.38403	1	10884	10884		27.129	12.958	1	2981500	+		24123	16906	17536	17661	23616	23616					-0.011392105647928474
KDQDHWRRSER	11	Unmodified	_KDQDHWRRSER_					0	0	0		ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2;CASP8AP2|p.E691Ifs*13|1|0.25|ENSG00000118412|chr6:89863779-89863780|AG/-|frameshift_variant;CASP8AP2|p.K1315Lfs*4|1|0.44|ENSG00000118412|chr6:89867231-89867249|TTAAAAGTTTGTTGCAAGG/-|frameshift_variant	ENSG00000118412|ENST00000551025|CASP8AP2	ENSG00000118412|ENST00000551025|CASP8AP2	MULTI-MSMS	A375_MHC_IP_R1	1	756.8129272460938	2	756.874362	1511.73417	-0.37813	-0.0002862	-4.0796	-0.0030877	-4.4577	-0.0033739	756.8714537898994	125.88	0.2494	125.88	125.75	126	0					9	4	3	0	0	0	0.73078	1	47946	47946		8.1555	5.4203	1	40701000			24124	3541	17537	17662	23617	23617					-0.0012270328156773758
KDQDLRDSRQQ	11	Unmodified	_KDQDLRDSRQQ_					0	0	0		ENSG00000225921|ENST00000451315|NOL7	ENSG00000225921|ENST00000451315|NOL7	ENSG00000225921|ENST00000451315|NOL7	MSMS	A375_MHC_IP_R2	2	694.935302734375	2	694.847478	1387.6804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.34	1	125.64	125.14	126.14	0.2951								0	0	0	0.15488	1	48832	48832		17.443	1.2935	1				24125	9700	17538	17663	23618	23618					0.0020707949609004572
KDQEERERNNQ	11	Unmodified	_KDQEERERNNQ_					0	0	0		ENSG00000166902|ENST00000300151|MRPL16	ENSG00000166902|ENST00000300151|MRPL16	ENSG00000166902|ENST00000300151|MRPL16	MULTI-MSMS	A375_MHC_IP_R1	1	723.7393188476562	2	723.340017	1444.66548	-0.45946	-0.00033235	-0.4722	-0.00034156	-0.93166	-0.00067391	723.3396738665671	20.415	0.61228	20.415	20.129	20.742	0					30	11	3	0	0	0	0.73694	1	5200	5200		2.2828	0.95324	1	3469600			24126	7130	17539	17664	23619	23619					-0.03906412371884471
KDQEERERNNQ	11	Unmodified	_KDQEERERNNQ_					0	0	0		ENSG00000166902|ENST00000300151|MRPL16	ENSG00000166902|ENST00000300151|MRPL16	ENSG00000166902|ENST00000300151|MRPL16	MULTI-MSMS	A375_MHC_IP_R2	2	723.7393798828125	2	723.340017	1444.66548	-1.0636	-0.00076938	0.21988	0.00015905	-0.84376	-0.00061033	723.3401863024719	19.241	0.45491	19.844	19.633	20.088	0.60308					17	8	3	0	0	0	0.72869	1	5888	5888		10.151	4.8537	1	6585000			24127	7130	17539	17664	23620	23620					-0.03906412371884471
KDQELKENV	9	Unmodified	_KDQELKENV_					0	0	0		KIF4B|p.E455K|1|0.13|ENSG00000226650|chr5:155015222-155015222|G/A|missense_variant	KIF4B|p.E455K|1|0.13|ENSG00000226650|chr5:155015222-155015222|G/A|missense_variant	KIF4B|p.E455K|1|0.13|ENSG00000226650|chr5:155015222-155015222|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	551.703857421875	2	551.790578	1101.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.883	1	31.602	31.102	32.102	0.71857								0	0	0	0.1493	1	10884	10884		22.736	3.4793	1				24128	14218	17540	17665	23621	23621					0.01988216401127829
KDQHGPALL	9	Unmodified	_KDQHGPALL_					0	0	0			REV__ENST00000586108.1_1_17:73839291-73840610:-|nuORF	REV__ENST00000586108.1_1_17:73839291-73840610:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	490.1717224121094	2	489.771991	977.529429	0.064242	3.1464E-05	-0.17035	-8.3434E-05	-0.10611	-5.197E-05	489.7717997272596	44.487	0.51064	44.487	44.216	44.727	0					22	9	3	0	0	0	0.46045	1	15550	15550		36.127	3.8215	1	6671000	+		24129	26382	17541	17666	23622	23622					0.03976589646049433
KDQLSRFRELS	11	Unmodified	_KDQLSRFRELS_					0	0	0			REV__nc|ENSG00000151445|Q9H9C1-2|VIPAS39	REV__nc|ENSG00000151445|Q9H9C1-2|VIPAS39	MULTI-SECPEP	A375_MHC_IP_R1	1	690.6024780273438	2	689.875508	1377.73646	-0.5283	-0.00036446	4.2896	0.0029593	3.7613	0.0025948	689.8773774696837	125.68	0.55237	125.68	125.5	126.05	0					12	10	2	0	0	0	0.9398	1	47799	47799		21.59	10.095	1	11019000	+		24130	19752	17542	17667	23623	23623					0.06270332403573775
KDREERERLLR	11	Unmodified	_KDREERERLLR_					0	0	0		nc|ENSG00000099904|Q9ULC8-2|ZDHHC8;ENSG00000099904|ENST00000334554|ZDHHC8;nc|ENSG00000099904|Q9ULC8-3|ZDHHC8	nc|ENSG00000099904|Q9ULC8-2|ZDHHC8	nc|ENSG00000099904|Q9ULC8-2|ZDHHC8	MULTI-MSMS	A375_MHC_IP_R2	2	750.8245849609375	2	750.423688	1498.83282	-0.7569	-0.000568	1.6042	0.0012038	0.84726	0.00063581	750.4246244467547	134.79	0.5058	134.93	134.7	135.2	0.13901					18	9	3	0	0	0	0.73891	1	53040	53040		1.1933	0.88631	1	2821700			24131	2091	17543	17668	23624	23624					0.10335899963502015
KDRFIWRT	8	Unmodified	_KDRFIWRT_					0	0	0		nc|ENSG00000087245|P08253-2|MMP2;nc|ENSG00000087245|P08253-3|MMP2;ENSG00000087245|ENST00000219070|MMP2	nc|ENSG00000087245|P08253-2|MMP2	nc|ENSG00000087245|P08253-2|MMP2	MULTI-SECPEP	A375_MHC_IP_R1	1	561.682861328125	2	561.314358	1120.61416	-0.43713	-0.00024537	-1.7825	-0.0010006	-2.2197	-0.0012459	561.3134498637257	39.314	0.40528	39.314	39.187	39.592	0					12	7	2	0	0	0	0.972	1	13372	13372		6.7232	0.51738	1	2276100			24132	1864	17544	17669	23625	23625					0.05867960182672505
KDRKQRWS	8	Unmodified	_KDRKQRWS_					0	0	0			REV__nc|ENSG00000146223|Q6DKI1-2|RPL7L1	REV__nc|ENSG00000146223|Q6DKI1-2|RPL7L1	MSMS	A375_MHC_IP_R2	2	368.6049499511719	3	368.540468	1102.59957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.442	1	45.211	44.711	45.711	0.7691								0	0	0	0.16876	1	16587	16587		13.042	2.243	1		+		24133	19523	17545	17670	23626	23626					0.052378880345031575
KDRLFLPTR	9	Unmodified	_KDRLFLPTR_					0	0	0		nc|ENSG00000178802|P34949-2|MPI;ENSG00000178802|ENST00000352410|MPI;ENST00000566556.1_1_15:75189332-75189575:+|nuORF	nc|ENSG00000178802|P34949-2|MPI	nc|ENSG00000178802|P34949-2|MPI	MULTI-MSMS	A375_MHC_IP_R1	1	382.58074951171875	3	382.564502	1144.67168	0.045495	1.7405E-05	-1.6213	-0.00062024	-1.5758	-0.00060284	382.56378477318657	23.762	0.35568	23.762	23.635	23.991	0					8	6	2	0	0	0	0.6629	1	6601	6601		10.315	0.16466	1	3418100			24134	8178	17546	17671	23627	23627					0.10512802388188902
KDRLRWLLGRR	11	Unmodified	_KDRLRWLLGRR_					0	0	0			REV__ENSG00000167103|ENST00000388747|PIP5KL1	REV__ENSG00000167103|ENST00000388747|PIP5KL1	MSMS	A375_MHC_IP_R2	2	734.9314575195312	2	734.952218	1467.88988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.8	1	127.07	126.57	127.57	0.26593								0	0	0	0.16302	1	49638	49638		2.9952	0.49676	1		+		24135	20731	17547	17672	23628	23628					0.17465412030514926
KDRLVLYFK	9	Unmodified	_KDRLVLYFK_					0	0	0		ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	MULTI-SECPEP	A375_MHC_IP_R2	2	393.9553527832031	3	394.572886	1180.69683	-0.42257	-0.00016674	-0.42717	-0.00016855	-0.84974	-0.00033529	394.57278900555553	18.968	0.28076	19.571	19.452	19.733	0.60308					12	5	3	0	0	0	0.76452	1	5713	5713		8.1555	3.6267	1	6978700			24136	4589	17548	17673	23629	23629					0.11370857190763672
KDRMKTVSVA	10	Unmodified	_KDRMKTVSVA_					0	0	0		ENSG00000141564|ENST00000306801|RPTOR;nc|ENSG00000141564|Q8N122-3|RPTOR;ENST00000577161.5_1_17:78519375-78883449:+|nuORF;nc|ENSG00000141564|Q8N122-2|RPTOR	ENSG00000141564|ENST00000306801|RPTOR	ENSG00000141564|ENST00000306801|RPTOR	MULTI-MSMS	A375_MHC_IP_R2	2	379.6157531738281	3	378.881502	1133.62268	0.065567	2.4842E-05	-1.084	-0.00041071	-1.0184	-0.00038587	378.88028997615635	32.34	0.66213	33.077	32.654	33.317	0.73692					27	12	3	0	0	0	0.6502	1	11509	11509		10.899	0	1	14608000			24137	5257	17549	17674	23630	23630					0.06121146036980463
KDRQEKPASKY	11	Unmodified	_KDRQEKPASKY_					0	0	0			REV__nc|ENSG00000103549|O75150-3|RNF40	REV__nc|ENSG00000103549|O75150-3|RNF40	MSMS	A375_MHC_IP_R2	2	675.4725952148438	2	675.362233	1348.70991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.59	1	119.2	118.7	119.7	0.60909								0	0	0	0.16223	1	45048	45048		7.1017	0	1		+		24138	17286	17550	17675	23631	23631					0.0495064351223391
KDRRGWTPRAF	11	Unmodified	_KDRRGWTPRAF_					0	0	0			REV__ENST00000457998.2_1_5:131702451-131705161:-|nuORF	REV__ENST00000457998.2_1_5:131702451-131705161:-|nuORF	MSMS	A375_MHC_IP_R2	2	695.3862915039062	2	695.378552	1388.74255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.92	1	115.61	115.11	116.11	0.68999								0	0	0	0.16265	1	43323	43323		4.897	0	1		+		24139	24946	17551	17676	23632	23632					0.06372895425738534
KDRYFWRRSHW	11	Unmodified	_KDRYFWRRSHW_					0	0	0		ENSG00000166670|ENST00000279441|MMP10	ENSG00000166670|ENST00000279441|MMP10	ENSG00000166670|ENST00000279441|MMP10	MULTI-MSMS	A375_MHC_IP_R2	2	546.6716918945312	3	546.279647	1635.81711	-0.68107	-0.00037205	-0.68132	-0.00037219	-1.3624	-0.00074425	546.279278610996	68.396	0.405	69.131	68.867	69.272	0.73512					15	7	3	0	0	0	0.73897	1	25911	25911		0.094841	0.011491	1	1270900			24140	7098	17552	17677	23633	23633					0.02463658237115851
KDSDWTAFSY	10	Unmodified	_KDSDWTAFSY_					0	0	0		ADGRG6|p.E195K|1|0.36|ENSG00000112414|chr6:142370307-142370307|G/A|missense_variant	ADGRG6|p.E195K|1|0.36|ENSG00000112414|chr6:142370307-142370307|G/A|missense_variant	ADGRG6|p.E195K|1|0.36|ENSG00000112414|chr6:142370307-142370307|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	610.6656494140625	2	610.266936	1218.51932	-0.30931	-0.00018876	-1.1195	-0.00068321	-1.4288	-0.00087197	610.2661226253206	59.542	0.40591	59.542	59.346	59.752	0					14	7	2	0	0	0	0.71245	1	21444	21444		6.7232	0	1	2491100			24141	71	17553	17678	23634	23634					-0.08120062869852518
KDSFFMESMSF	11	Unmodified	_KDSFFMESMSF_					0	0	0		CCNB3|p.E258K|1|0.72|ENSG00000147082|chrX:50308941-50308941|G/A|missense_variant	CCNB3|p.E258K|1|0.72|ENSG00000147082|chrX:50308941-50308941|G/A|missense_variant	CCNB3|p.E258K|1|0.72|ENSG00000147082|chrX:50308941-50308941|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	678.245849609375	2	678.285956	1354.55736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.49	1	121.93	121.43	122.43	0.44488								0	0	0	0.15016	1	46470	46470		20.415	6.0092	1				24142	323	17554	17679	23635	23635					-0.10573636271055875
KDSFLSRPPP	10	Unmodified	_KDSFLSRPPP_					0	0	0			REV__ENSG00000099954|ENST00000262608|CECR2	REV__ENSG00000099954|ENST00000262608|CECR2	MULTI-SECPEP	A375_MHC_IP_R1	1	572.7114868164062	2	572.31148	1142.60841	-0.17943	-0.00010269	0.19729	0.00011291	0.017858	1.022E-05	572.3115023429929	55.914	0.66118	55.914	55.533	56.194	0					24	12	4	0	0	0	0.66275	1	19999	19999		23.79	8.5413	1	6406100	+		24143	17036	17555	17680	23636	23636					0.0428081688032762
KDSIDLNEKW	10	Unmodified	_KDSIDLNEKW_					0	0	0			REV__tr|U7T2L2|U7T2L2_FUSNUTwo-componentsystem,OmpRfamily,responseregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00489PE=4SV=1	REV__tr|U7T2L2|U7T2L2_FUSNUTwo-componentsystem,OmpRfamily,responseregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00489PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	416.947021484375	3	416.547065	1246.61937	-0.165	-6.8728E-05	-0.085956	-3.5805E-05	-0.25095	-0.00010453	416.54699236598464	72.486	0.40611	73.221	72.973	73.379	0.7354					11	7	2	0	0	0	0.72358	1	27539	27539		1.7423	1.7423	1	1410400	+		24144	28750	17556	17681	23637	23637					0.005921744639408644
KDSKEDSDML	10	Unmodified	_KDSKEDSDML_					0	0	0		nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4;ENSG00000115310|ENST00000337526|RTN4	nc|ENSG00000115310|Q9NQC3-4|RTN4	nc|ENSG00000115310|Q9NQC3-4|RTN4	MULTI-SECPEP	A375_MHC_IP_R1	1	390.2449645996094	3	389.844783	1166.51252	0.41769	0.00016283	0.48198	0.0001879	0.89967	0.00035073	389.84499072070554	107.62	0.56242	107.62	107.34	107.9	0					20	10	2	0	0	0	0.92227	1	39486	39486		7.9454	0.33645	1	2559400			24145	3300	17557	17682	23638	23638					-0.06407743812746958
KDSKEDSDML	10	Unmodified	_KDSKEDSDML_					0	0	0		nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4;ENSG00000115310|ENST00000337526|RTN4	nc|ENSG00000115310|Q9NQC3-4|RTN4	nc|ENSG00000115310|Q9NQC3-4|RTN4	MULTI-SECPEP	A375_MHC_IP_R2	2	390.2451477050781	3	389.844783	1166.51252	-0.24241	-9.4502E-05	0.76876	0.0002997	0.52636	0.0002052	389.8450634418992	106.96	0.60849	107.72	107.44	108.05	0.75977					19	11	2	0	0	0	0.90513	1	40411	40411		10.899	3.29	1	2446000			24146	3300	17557	17682	23639	23639					-0.06407743812746958
KDSKLLLEET	10	Unmodified	_KDSKLLLEET_					0	0	0		ENSG00000083168|ENST00000265713|KAT6A	ENSG00000083168|ENST00000265713|KAT6A	ENSG00000083168|ENST00000265713|KAT6A	MULTI-SECPEP	A375_MHC_IP_R1	1	391.95611572265625	3	392.555449	1174.64452	-0.1186	-4.6556E-05	1.4876	0.00058397	1.369	0.00053741	392.5560821013633	28.012	0.45315	28.012	27.735	28.188	0					9	8	2	0	0	0	0.94163	1	8585	8585		1.7423	0.67081	1	2196400			24147	1772	17558	17683	23640	23640					0.06418229266523667
KDSLRMFLKCD	11	Unmodified	_KDSLRMFLKCD_					0	0	0		ENSG00000099991|ENST00000263119|CABIN1	ENSG00000099991|ENST00000263119|CABIN1	ENSG00000099991|ENST00000263119|CABIN1	MSMS	A375_MHC_IP_R1	1	678.3436889648438	2	678.34414	1354.67373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.06	1	122.06	121.56	122.56	0								0	0	0	0.12828	1	45377	45377		29.841	8.2504	1				24148	2097	17559	17684	23641	23641					0.010577270195199162
KDSPNFSVPV	10	Unmodified	_KDSPNFSVPV_					0	0	0			REV__nc|ENSG00000189266|Q9NPJ4-2|PNRC2	REV__nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-SECPEP	A375_MHC_IP_R2	2	545.1483154296875	2	545.282389	1088.55022	-0.81562	-0.00044474	2.2012	0.0012003	1.3856	0.00075553	545.2845635372446	31.856	0.25166	32.593	32.453	32.704	0.73692					6	4	2	0	0	0	0.37302	1	11231	11231		33.445	14.188	1	705910	+		24149	22145	17560	17685	23642	23642					0.009491352350551097
KDTEDSLSY	9	Unmodified	_KDTEDSLSY_					0	0	0		ENSG00000162852|ENST00000366513|CNST;nc|ENSG00000162852|Q6PJW8-2|CNST	ENSG00000162852|ENST00000366513|CNST	ENSG00000162852|ENST00000366513|CNST	MULTI-MSMS	A375_MHC_IP_R1	1	529.6376342773438	2	529.237844	1056.46113	-0.43628	-0.0002309	-0.043126	-2.2824E-05	-0.47941	-0.00025372	529.2377808438893	62.573	0.76841	62.573	62.198	62.966	0					35	14	3	0	0	0	0.11629	1	22539	22539		47.749	1.7277	1	10997000			24150	6605	17561	17686	23643	23643					-0.06483744515116996
KDTEDSLSY	9	Unmodified	_KDTEDSLSY_					0	0	0		ENSG00000162852|ENST00000366513|CNST;nc|ENSG00000162852|Q6PJW8-2|CNST	ENSG00000162852|ENST00000366513|CNST	ENSG00000162852|ENST00000366513|CNST	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	529.237844	1056.46113	-0.80847	-0.00042788	-0.27844	-0.00014736	-1.0869	-0.00057523	529.2376720221406	61.923	0.86066	62.666	62.319	63.18	0.74263	0.046607	-0.00013968	NaN	47.749	44	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11931000			24151	6605	17561	17686							-0.06483744515116996
KDTFYRYFYEK	11	Unmodified	_KDTFYRYFYEK_					0	0	0			REV__NLRP1|p.E497K|1|0.47|ENSG00000091592|chr17:5559207-5559207|C/T|missense_variant	REV__NLRP1|p.E497K|1|0.47|ENSG00000091592|chr17:5559207-5559207|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	520.6763305664062	3	520.589153	1558.74563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.885	1	68.62	68.12	69.12	0.73511								0	0	0	0.16341	1	25725	25725		0.32927	0	1		+		24152	27613	17562	17687	23644	23644					-0.011393190308126577
KDTLKAGK	8	Unmodified	_KDTLKAGK_					0	0	0		ENSG00000110066|ENST00000304363|KMT5B;nc|ENSG00000110066|Q4FZB7-4|KMT5B;nc|ENSG00000110066|Q4FZB7-2|KMT5B;ENST00000466295.1_1_11:67957354-67957588:-|nuORF	ENSG00000110066|ENST00000304363|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	MULTI-MSMS	A375_MHC_IP_R2	2	860.9200439453125	1	860.519993	859.512717	-0.43222	-0.00037193	0.73845	0.00063545	0.30623	0.00026352	860.5204543598936	144.95	0.11739	144.97	144.89	145.01	0.021408					4	2	2	0	0	0	0.77839	1	56616	56616		0.79363	0	1	1253700			24153	2916	17563	17688	23645	23645					0.07734088760093982
KDTLKAGK	8	Unmodified	_KDTLKAGK_					0	0	0		ENSG00000110066|ENST00000304363|KMT5B;nc|ENSG00000110066|Q4FZB7-4|KMT5B;nc|ENSG00000110066|Q4FZB7-2|KMT5B;ENST00000466295.1_1_11:67957354-67957588:-|nuORF	ENSG00000110066|ENST00000304363|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	MULTI-MATCH	A375_MHC_IP_R1	1		1	860.519993	859.512717	-0.6601	-0.00056803	1.2704	0.0010932	0.61034	0.00052521	860.5208890495512	144.91	0.24501	144.91	144.72	144.97	0	-0.030325	0.00031803	NaN	0.79363	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	657570			24154	2916	17563	17688							0.07734088760093982
KDTYRLRRRAT	11	Unmodified	_KDTYRLRRRAT_					0	0	0		nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C;ENSG00000135916|ENST00000326427|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	MULTI-MSMS	A375_MHC_IP_R1	1	479.5887451171875	3	479.279536	1434.81678	-0.79428	-0.00038068	0.78151	0.00037456	-0.012767	-6.1188E-06	479.27985140422015	142.29	0.65759	142.29	141.83	142.49	0					27	12	3	0	0	0	0.73891	1	54459	54459		0.40827	0.24894	1	1868400			24155	4728	17564	17689	23646	23646					0.11676238517247839
KDVEDLGKLV	10	Unmodified	_KDVEDLGKLV_					0	0	0		nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-3|CIITA	nc|ENSG00000179583|P33076|CIITA;nc|ENSG00000179583|P33076-3|CIITA	nc|ENSG00000179583|P33076|CIITA	MULTI-MSMS	A375_MHC_IP_R1	1	372.94842529296875	3	372.548406	1114.62339	0.14832	5.5257E-05	0.28575	0.00010646	0.43407	0.00016171	372.54846561476677	66.249	1.2204	66.249	65.871	67.091	0					69	23	5	0	0	0	0.68638	1	23937	23937		9.2438	0.95734	1	63796000			24156	8241;14793	17565	17690	23647	23647					0.0706626395767671
KDVGPGSISY	10	Unmodified	_KDVGPGSISY_					0	0	0			REV__nc|ENSG00000134765|Q08554-2|DSC1	REV__nc|ENSG00000134765|Q08554-2|DSC1	MULTI-SECPEP	A375_MHC_IP_R1	1	512.1484985351562	2	511.761289	1021.50803	-0.48695	-0.0002492	2.0399	0.001044	1.553	0.00079476	511.76232287983186	31.936	0.51233	31.936	31.667	32.179	0					13	9	2	0	0	0	0.58856	1	10200	10200		28.495	0	1	1947200	+		24157	18798	17566	17691	23648	23648					-0.0018684017333043812
KDVIKVRITK	10	Unmodified	_KDVIKVRITK_					0	0	0			REV__SLC8A3|p.E605K|1|0.43|ENSG00000100678|chr14:70060911-70060911|C/T|missense_variant	REV__SLC8A3|p.E605K|1|0.43|ENSG00000100678|chr14:70060911-70060911|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	400.99932861328125	3	400.599324	1198.77614	-0.30055	-0.0001204	0.16651	6.6703E-05	-0.13404	-5.3698E-05	400.59936676639154	23.132	1.2156	23.132	22.673	23.889	0					68	23	5	0	0	0	0.94698	1	6498	6498		0.92553	0	1	175150000	+		24158	28005	17567	17692	23649	23649					0.18470504144920596
KDVIMYKWRIK	11	Unmodified	_KDVIMYKWRIK_					0	0	0			REV__SMARCA4|p.E882K|2|0.35|ENSG00000127616|chr19:11021752-11021752|G/A|missense_variant	REV__SMARCA4|p.E882K|2|0.35|ENSG00000127616|chr19:11021752-11021752|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	740.828125	2	740.428864	1478.84318	-0.88891	-0.00065817	0.63803	0.00047241	-0.25088	-0.00018576	740.42918704946	142.38	0.65767	142.38	141.98	142.64	0					35	12	4	0	0	0	0.73897	1	54558	54558		0.35063	0.043601	1	9677900	+		24159	28014	17568	17693	23650	23650					0.12290791364353026
KDVIMYKWRIK	11	Unmodified	_KDVIMYKWRIK_					0	0	0			REV__SMARCA4|p.E882K|2|0.35|ENSG00000127616|chr19:11021752-11021752|G/A|missense_variant	REV__SMARCA4|p.E882K|2|0.35|ENSG00000127616|chr19:11021752-11021752|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	741.1788330078125	2	740.428864	1478.84318	-0.88891	-0.00065817	0.63803	0.00047241	-0.25088	-0.00018576	740.42918704946	142.38	0.65767	142.38	141.98	142.64	0					35	12	4	0	0	0	1.0014	1	54680	54680		0.35063	0.043601	1	9677900	+		24160	28014	17568	17693	23651	23651					0.12290791364353026
KDVIMYKWRIK	11	Unmodified	_KDVIMYKWRIK_					0	0	0			REV__SMARCA4|p.E882K|2|0.35|ENSG00000127616|chr19:11021752-11021752|G/A|missense_variant	REV__SMARCA4|p.E882K|2|0.35|ENSG00000127616|chr19:11021752-11021752|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	740.428864	1478.84318	-0.65052	-0.00048166	0.95132	0.00070439	0.3008	0.00022272	740.4293633270878	142.41	0.60941	142.44	142.03	142.64	0.030731	0.029465	0.00022449	NaN	0.35063	37	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9655400	+		24161	28014	17568	17693							0.12290791364353026
KDVKEAVKHLL	11	Unmodified	_KDVKEAVKHLL_					0	0	0		ENSG00000277556|ENST00000374779|OR13C5;ENSG00000276119|ENST00000542196|OR13C2	ENSG00000277556|ENST00000374779|OR13C5	ENSG00000277556|ENST00000374779|OR13C5	MULTI-MSMS	A375_MHC_IP_R2	2	427.66241455078125	3	427.2626	1278.76597	-0.66742	-0.00028516	0.012732	5.4397E-06	-0.65469	-0.00027972	427.26257646938114	53.657	0.61604	54.408	54.147	54.764	0.75105					32	11	4	0	0	0	0.70919	1	20226	20226		14.838	1.9092	1	16489000			24162	10018	17569	17694	23652	23652					0.13773896419706944
KDVKVLYSV	9	Unmodified	_KDVKVLYSV_					0	0	0			REV__tr|U7SHE5|U7SHE5_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02282PE=4SV=1	REV__tr|U7SHE5|U7SHE5_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02282PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	525.4573364257812	2	525.813325	1049.6121	0.046593	2.4499E-05	-0.87893	-0.00046215	-0.83234	-0.00043765	525.8130843689897	69.554	0.61053	69.554	69.121	69.732	0					18	11	2	0	0	0	0.24324	1	25100	25100		31.268	21.885	1	2431500	+		24163	28210	17570	17695	23653	23653					0.08927486654192762
KDVLSHLV	8	Unmodified	_KDVLSHLV_					0	0	0			REV__ENSG00000100129|ENST00000652021|EIF3L	REV__ENSG00000100129|ENST00000652021|EIF3L	MULTI-SECPEP	A375_MHC_IP_R2	2	456.1473388671875	2	455.77146	909.528367	-0.40833	-0.00018611	-1.0627	-0.00048436	-1.4711	-0.00067047	455.7711499196504	54.725	0.25387	55.476	55.269	55.523	0.75075					7	4	2	0	0	0	0.94479	1	20671	20671		8.5933	1.304	1	629890	+		24164	17052	17571	17696	23654	23654					0.06998375277134983
KDVQNQFRYR	10	Unmodified	_KDVQNQFRYR_					0	0	0			REV__nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	REV__nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	MULTI-SECPEP	A375_MHC_IP_R1	1	452.3053894042969	3	451.905587	1352.69493	-0.25835	-0.00011675	-0.19708	-8.9063E-05	-0.45543	-0.00020581	451.90549504716284	27.508	0.30274	27.508	27.331	27.634	0					13	5	3	0	0	0	0.92445	1	8363	8363		10.315	4.9125	1	7045600	+		24165	17213	17572	17697	23655	23655					0.03269196434894184
KDVQNQFRYR	10	Unmodified	_KDVQNQFRYR_					0	0	0			REV__nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	REV__nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	MULTI-SECPEP	A375_MHC_IP_R2	2	452.3052062988281	3	451.905587	1352.69493	-0.52178	-0.0002358	-0.29448	-0.00013308	-0.81626	-0.00036887	451.90549516649946	26.831	0.35876	27.491	27.313	27.671	0.65992					14	6	3	0	0	0	0.93407	1	9114	9114		10.315	3.2781	1	9401700	+		24166	17213	17572	17697	23656	23656					0.03269196434894184
KDVRFLDLD	9	Unmodified	_KDVRFLDLD_					0	0	0			REV__ENSG00000031698|ENST00000234677|SARS1	REV__ENSG00000031698|ENST00000234677|SARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	373.5806579589844	3	374.204751	1119.59242	0.01958	7.3268E-06	-0.24852	-9.2999E-05	-0.22894	-8.5672E-05	374.2046082124906	21.487	0.30604	22.106	22.03	22.336	0.61932					9	5	2	0	0	0	0.81254	1	6848	6848		0.23584	0	1	1729500	+		24167	16301	17573	17698	23657	23657					0.03741110643431966
KDVRQYRSVD	10	Unmodified	_KDVRQYRSVD_					0	0	0			REV__HECW2|p.E807K|1|0.15|ENSG00000138411|chr2:196317289-196317289|C/T|missense_variant	REV__HECW2|p.E807K|1|0.15|ENSG00000138411|chr2:196317289-196317289|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	422.6101989746094	3	422.558076	1264.6524	-0.15593	-6.589E-05	-0.01139	-4.8128E-06	-0.16732	-7.0703E-05	422.8922252045508	30.792	0.45314	31.511	31.317	31.77	0.71857					19	8	4	0	0	0	0.70792	1	10790	10790		8.7518	3.4549	1	3213200	+		24168	26726	17574	17699	23658	23658					0.03065801306661342
KDVRRHLVV	9	Unmodified	_KDVRRHLVV_					0	0	0		nc|ENSG00000118495|Q9UM63-2|PLAGL1;ENSG00000118495|ENST00000674357|PLAGL1;ENSG00000126003|ENST00000246229|PLAGL2	nc|ENSG00000118495|Q9UM63-2|PLAGL1	nc|ENSG00000118495|Q9UM63-2|PLAGL1	MULTI-MSMS	A375_MHC_IP_R1	1	374.6045837402344	3	374.568247	1120.68291	0.029775	1.1153E-05	0.022121	8.286E-06	0.051897	1.9439E-05	374.56825261417146	23.559	0.61029	23.559	23.33	23.94	0					19	11	2	0	0	0	0.65721	1	6557	6557		7.1017	2.2047	1	22831000			24169	3543	17575	17700	23659	23659					0.12739624482355794
KDVRRHLVV	9	Unmodified	_KDVRRHLVV_					0	0	0		nc|ENSG00000118495|Q9UM63-2|PLAGL1;ENSG00000118495|ENST00000674357|PLAGL1;ENSG00000126003|ENST00000246229|PLAGL2	nc|ENSG00000118495|Q9UM63-2|PLAGL1	nc|ENSG00000118495|Q9UM63-2|PLAGL1	MULTI-MATCH	A375_MHC_IP_R2	2		3	374.568247	1120.68291	0.0036471	1.3661E-06	-1.1668	-0.00043704	-1.1631	-0.00043567	374.56814906250094	23.165	0.20366	23.795	23.675	23.878	0.63014	0.11819	-0.0012992	NaN	7.1017	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1419300			24170	3543	17575	17700							0.12739624482355794
KDVSVSGPQC	10	Unmodified	_KDVSVSGPQC_					0	0	0			REV__ENSG00000169871|ENST00000306085|TRIM56	REV__ENSG00000169871|ENST00000306085|TRIM56	MSMS	A375_MHC_IP_R1	1	510.14154052734375	2	510.244949	1018.47534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.294	1	69.294	68.794	69.794	0								0	0	0	0.14864	1	25143	25143		20.415	3.3016	1		+		24171	20947	17576	17701	23660	23660					-0.03315370567827358
KDVTAKKDLEL	11	Unmodified	_KDVTAKKDLEL_					0	0	0		nc|ENSG00000131351|Q9BT25-2|HAUS8;nc|ENSG00000131351|Q9BT25-3|HAUS8;ENSG00000131351|ENST00000253669|HAUS8;ENST00000597479.1_1_19:17163486-17163834:-|nuORF;ENST00000597917.1_1_19:17160685-17163834:-|nuORF	nc|ENSG00000131351|Q9BT25-2|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	MULTI-MSMS	A375_MHC_IP_R1	1	630.7638549804688	2	630.36391	1258.71327	-0.98029	-0.00061794	0.23891	0.0001506	-0.74138	-0.00046734	630.3639332127672	142.05	1.4253	142.05	141.01	142.44	0					64	27	3	0	0	0	0.7359	1	54315	54315		3.2813	0	1	6947500			24172	4320	17577	17702	23661	23661					0.09425893566231025
KDVTMSVFAF	10	Unmodified	_KDVTMSVFAF_					0	0	0			REV__ENST00000425806.2_1_1:101406941-101407361:-|nuORF	REV__ENST00000425806.2_1_1:101406941-101407361:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	381.5888671875	3	382.195087	1143.56343	-0.27569	-0.00010537	-3.7191	-0.0014214	-3.9948	-0.0015268	382.19429586754006	30.116	0.20354	30.835	30.708	30.911	0.71857					5	3	2	0	0	0	0.91556	1	10555	10555		5.7834	0	1	562030	+		24173	24640	17578	17703	23662	23662					-0.0026074997722389526
KDVVVMNAAFT	11	Unmodified	_KDVVVMNAAFT_					0	0	0			REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2	REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2	MULTI-MSMS	A375_MHC_IP_R1	1	399.2776184082031	3	398.877758	1193.61144	0.072094	2.8757E-05	-0.39054	-0.00015578	-0.31845	-0.00012702	398.8774722490542	21.595	0.66125	21.595	21.25	21.911	0					20	12	2	0	0	0	0.72869	1	5713	5713		5.5233	0	1	1806600	+		24174	20291	17579	17704	23663	23663					0.022383239428108936
KDVYQLEQQLH	11	Unmodified	_KDVYQLEQQLH_					0	0	0		PKD1|p.E4234K|1|0.36|ENSG00000008710|chr16:2089939-2089939|C/T|missense_variant	PKD1|p.E4234K|1|0.36|ENSG00000008710|chr16:2089939-2089939|C/T|missense_variant	PKD1|p.E4234K|1|0.36|ENSG00000008710|chr16:2089939-2089939|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	467.1471252441406	3	467.577136	1399.70958	0.21207	9.9158E-05	-0.92753	-0.00043369	-0.71547	-0.00033454	467.57684461889465	49.015	0.70847	49.015	48.679	49.387	0					23	13	3	0	0	0	0.99482	1	17372	17372		9.2438	3.7205	1	3003200			24175	15184	17580	17705	23664	23664					0.025712237923698922
KDWFLLRRRRR	11	Unmodified	_KDWFLLRRRRR_					0	0	0			REV__nc|ENSG00000100918|O95072-2|REC8	REV__nc|ENSG00000100918|O95072-2|REC8	MSMS	A375_MHC_IP_R2	2	801.4837646484375	2	801.484217	1600.95388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.78	1	121.22	120.72	121.72	0.44488								0	0	0	0.16352	1	46123	46123		1.1933	0.84271	1		+		24176	17129	17581	17706	23665	23665					0.17744192187456065
KDWKPIGAL	9	Unmodified	_KDWKPIGAL_					0	0	0			REV__ENST00000557001.5_1_14:52037087-52042616:+|nuORF	REV__ENST00000557001.5_1_14:52037087-52042616:+|nuORF	MSMS	A375_MHC_IP_R2	2	514.4293823242188	2	514.300384	1026.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.231	1	79.976	79.476	80.476	0.74474								0	0	0	0.15468	1	30068	30068		13.906	0.39817	1		+		24177	26117	17582	17707	23666	23666					0.07398637202550162
KDWKQKCNHTV	11	Unmodified	_KDWKQKCNHTV_					0	0	0		ENST00000359901.8_1_2:98128184-98128274:-|nuORF	ENST00000359901.8_1_2:98128184-98128274:-|nuORF	ENST00000359901.8_1_2:98128184-98128274:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	694.1331176757812	2	693.850978	1385.6874	-0.7668	-0.00053204	-2.0781	-0.0014419	-2.8449	-0.0019739	693.8522656484442	80.853	0.15413	81.598	81.468	81.622	0.74474					4	2	2	0	0	0	0.72728	1	30689	30689		11.495	2.7493	1	1562800			24178	11020	17583	17708	23667	23667					0.009987208429492966
KDWRKVKKLK	10	Unmodified	_KDWRKVKKLK_					0	0	0		ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C	ENSG00000171988|ENST00000399262|JMJD1C	ENSG00000171988|ENST00000399262|JMJD1C	MSMS	A375_MHC_IP_R2	2	664.92822265625	2	664.929889	1327.84522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.36	1	120.89	120.39	121.39	0.5321								0	0	0	0.15353	1	45922	45922		9.3831	6.3879	1				24179	7668	17584	17709	23668	23668					0.19441588164477253
KDWTKFEWITW	11	Unmodified	_KDWTKFEWITW_					0	0	0			REV__ENST00000281830.3_1_2:223916941-223917555:+|nuORF	REV__ENST00000281830.3_1_2:223916941-223917555:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	770.7843017578125	2	770.385177	1538.7558	-0.78322	-0.00060338	-0.21425	-0.00016506	-0.99747	-0.00076843	770.3849422016976	137.04	0.36053	137.04	136.87	137.23	0					16	6	4	0	0	0	0.99971	1	52770	52770		7.609	7.609	1	5440100	+		24180	23318	17585	17710	23669	23669					0.007972886944571655
KDWTKFEWITW	11	Unmodified	_KDWTKFEWITW_					0	0	0			REV__ENST00000281830.3_1_2:223916941-223917555:+|nuORF	REV__ENST00000281830.3_1_2:223916941-223917555:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	770.7841186523438	2	770.385177	1538.7558	-0.75507	-0.00058169	-0.68651	-0.00052888	-1.4416	-0.0011106	770.3847682932064	136.93	0.25734	137.04	136.92	137.17	0.11134					13	4	4	0	0	0	0.99856	1	53766	53766		10.151	7.1553	1	4435300	+		24181	23318	17585	17710	23670	23670					0.007972886944571655
KDYGYTLGY	9	Unmodified	_KDYGYTLGY_					0	0	0			REV__ENSG00000130943|ENST00000253255|PKDREJ	REV__ENSG00000130943|ENST00000253255|PKDREJ	MULTI-SECPEP	A375_MHC_IP_R2	2	540.6372680664062	2	540.25584	1078.49713	-0.6751	-0.00036473	0.67656	0.00036552	0.0014574	7.8737E-07	540.2563772315568	46.75	0.30384	47.511	47.309	47.613	0.76128					8	5	2	0	0	0	0.62767	1	17498	17498		23.148	12.324	1	1749300	+		24182	18575	17586	17711	23671	23671					-0.03898242547620612
KDYIKMMLQ	9	Unmodified	_KDYIKMMLQ_					0	0	0		nc|ENSG00000121988|Q5FWF4-5|ZRANB3;nc|ENSG00000121988|Q5FWF4-3|ZRANB3;ENSG00000121988|ENST00000264159|ZRANB3	nc|ENSG00000121988|Q5FWF4-5|ZRANB3	nc|ENSG00000121988|Q5FWF4-5|ZRANB3	MULTI-SECPEP	A375_MHC_IP_R1	1	389.9207458496094	3	390.540089	1168.59844	0.14787	5.7749E-05	-0.56013	-0.00021875	-0.41226	-0.000161	390.53984037255987	31.371	0.65988	31.371	31.109	31.769	0					32	12	4	0	0	0	0.78353	1	10096	10096		6.1918	0	1	21254000			24183	3754	17587	17712	23672	23672					0.020881695590787785
KDYINRKT	8	Unmodified	_KDYINRKT_					0	0	0			REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	MULTI-SECPEP	A375_MHC_IP_R2	2	519.080810546875	2	519.290548	1036.56654	-0.71613	-0.00037188	-0.41426	-0.00021512	-1.1304	-0.000587	519.290407166712	31.179	0.50909	31.897	31.618	32.128	0.71857					12	9	2	0	0	0	0.972	1	11073	11073		13.906	5.9959	1	2275400	+		24184	17145	17588	17713	23673	23673					0.04972261191801408
KDYSDMAIVW	10	Unmodified	_KDYSDMAIVW_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	A375_MHC_IP_R2	2	409.60455322265625	3	409.861996	1226.56416	-0.354	-0.00014509	0.47266	0.00019373	0.11866	4.8632E-05	409.86207798717476	26.577	0.45663	27.237	26.957	27.414	0.65992					12	8	2	0	0	0	0.9269	1	8895	8895		0.62683	0	1	1978000	+		24185	18059	17589	17714	23674	23674					-0.04005955328193522
KDYSNVDFGEH	11	Unmodified	_KDYSNVDFGEH_					0	0	0		tr|U7SXR4|U7SXR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00932PE=4SV=1	tr|U7SXR4|U7SXR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00932PE=4SV=1	tr|U7SXR4|U7SXR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00932PE=4SV=1	MSMS	A375_MHC_IP_R1	1	655.873779296875	2	655.786024	1309.55749	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.52	1	116.52	116.02	117.02	0								0	0	0	0.16265	1	42742	42742		4.897	0.56777	1				24186	29830	17590	17715	23675	23675					-0.08490176955183415
KDYVKAGGILQ	11	Unmodified	_KDYVKAGGILQ_					0	0	0		ENSG00000008311|ENST00000417368|AASS	ENSG00000008311|ENST00000417368|AASS	ENSG00000008311|ENST00000417368|AASS	MULTI-SECPEP	A375_MHC_IP_R1	1	596.2079467773438	2	596.340238	1190.66592	0.037264	2.2222E-05	-0.1492	-8.8974E-05	-0.11193	-6.6751E-05	596.339706189411	44.601	0.25581	44.601	44.471	44.727	0					7	4	2	0	0	0	0.85086	1	15583	15583		28.495	5.7582	1	1063400			24187	958	17591	17716	23676	23676					0.07821659085902866
KDYVKAGGILQ	11	Unmodified	_KDYVKAGGILQ_					0	0	0		ENSG00000008311|ENST00000417368|AASS	ENSG00000008311|ENST00000417368|AASS	ENSG00000008311|ENST00000417368|AASS	MULTI-MATCH	A375_MHC_IP_R2	2		2	596.340238	1190.66592	-0.36357	-0.00021681	0.40312	0.00024039	0.03955	2.3585E-05	596.3403317808675	43.786	0.20121	44.555	44.43	44.631	0.7691	-0.022843	0.00041104	NaN	28.495	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1307200			24188	958	17591	17716							0.07821659085902866
KEAAQEAVKLY	11	Unmodified	_KEAAQEAVKLY_					0	0	0		nc|ENSG00000271793|O60506-5|SYNCRIP;nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP	nc|ENSG00000271793|O60506-5|SYNCRIP	nc|ENSG00000271793|O60506-5|SYNCRIP	MULTI-SECPEP	A375_MHC_IP_R1	1	417.9655456542969	3	417.231077	1248.6714	0.081548	3.4024E-05	0.090953	3.7948E-05	0.1725	7.1973E-05	417.2309947784327	33.054	0.40473	33.054	32.785	33.19	0					16	7	4	0	0	0	0.20075	1	10765	10765		54.259	35.919	1	3437700			24189	4666	17592	17717	23677	23677					0.05701337877712831
KEAAQEAVKLY	11	Unmodified	_KEAAQEAVKLY_					0	0	0		nc|ENSG00000271793|O60506-5|SYNCRIP;nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP	nc|ENSG00000271793|O60506-5|SYNCRIP	nc|ENSG00000271793|O60506-5|SYNCRIP	MULTI-MSMS	A375_MHC_IP_R2	2	417.63067626953125	3	417.231077	1248.6714	-0.069548	-2.9018E-05	-0.55191	-0.00023027	-0.62145	-0.00025929	417.2308741948025	32.318	0.40807	33.055	32.857	33.265	0.73691					11	7	2	0	0	0	0.41048	1	11518	11518		38.161	15.145	1	2896600			24190	4666	17592	17717	23678	23678					0.05701337877712831
KEAEEEEL	8	Unmodified	_KEAEEEEL_					0	0	0		ENSG00000052749|ENST00000370992|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;nc|ENSG00000052749|Q5JTH9-2|RRP12;ENST00000491313.5_1_10:99116853-99127090:-|nuORF;ENST00000479481.5_1_10:99116853-99131081:-|nuORF	ENSG00000052749|ENST00000370992|RRP12;ENST00000479481.5_1_10:99116853-99131081:-|nuORF	ENSG00000052749|ENST00000370992|RRP12	MULTI-SECPEP	A375_MHC_IP_R1	1	488.67120361328125	2	488.727112	975.439671	-0.35163	-0.00017185	1.153	0.00056348	0.80133	0.00039163	488.7273800128303	34.343	0.25374	34.343	34.253	34.507	0					6	4	2	0	0	0	0.91495	1	11290	11290		12.532	6.3258	1	988780			24191	1240;12475	17593	17718	23679	23679					-0.049031295438453526
KEAEFLQKL	9	Unmodified	_KEAEFLQKL_					0	0	0		nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;ENSG00000143398|ENST00000368888|PIP5K1A;nc|ENSG00000143398|Q99755-2|PIP5K1A;ENST00000486048.2_1_1:151204736-151206704:+|nuORF;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C;PIP5K1C|p.L302Rfs*82|1|0.27|ENSG00000186111|chr19:3653306-3653306|A/-|frameshift_variant;nc|ENSG00000107242|O14986-3|PIP5K1B;ENSG00000107242|ENST00000265382|PIP5K1B;nc|ENSG00000107242|O14986-2|PIP5K1B	nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000587482.1_1_19:3649915-3700388:-|nuORF	nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-SECPEP	A375_MHC_IP_R1	1	553.7159423828125	2	553.316232	1104.61791	-0.057077	-3.1582E-05	-0.42713	-0.00023634	-0.48421	-0.00026792	553.3160370393839	49	0.65658	49	48.629	49.285	0					26	12	3	0	0	0	0.011093	1	17286	17286		128.57	52.812	1	6861100			24192	12500;5384;8719	17594	17719	23680	23680					0.06978585165848017
KEAEFLQKL	9	Unmodified	_KEAEFLQKL_					0	0	0		nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;ENSG00000143398|ENST00000368888|PIP5K1A;nc|ENSG00000143398|Q99755-2|PIP5K1A;ENST00000486048.2_1_1:151204736-151206704:+|nuORF;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C;PIP5K1C|p.L302Rfs*82|1|0.27|ENSG00000186111|chr19:3653306-3653306|A/-|frameshift_variant;nc|ENSG00000107242|O14986-3|PIP5K1B;ENSG00000107242|ENST00000265382|PIP5K1B;nc|ENSG00000107242|O14986-2|PIP5K1B	nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000587482.1_1_19:3649915-3700388:-|nuORF	nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-MSMS	A375_MHC_IP_R2	2	369.6004333496094	3	369.213246	1104.61791	0.37969	0.00014019	-0.49783	-0.00018381	-0.11814	-4.3618E-05	369.2130261805129	47.968	0.45227	48.729	48.532	48.984	0.76128					19	8	3	0	0	0	0.54799	2	17997	17990;17997		17.443	6.7624	1	2978700			24193	12500;5384;8719	17594	17719	23681;23682	23682					0.06978585165848017
KEAEFLQKL	9	Unmodified	_KEAEFLQKL_					0	0	0		nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;ENSG00000143398|ENST00000368888|PIP5K1A;nc|ENSG00000143398|Q99755-2|PIP5K1A;ENST00000486048.2_1_1:151204736-151206704:+|nuORF;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C;PIP5K1C|p.L302Rfs*82|1|0.27|ENSG00000186111|chr19:3653306-3653306|A/-|frameshift_variant;nc|ENSG00000107242|O14986-3|PIP5K1B;ENSG00000107242|ENST00000265382|PIP5K1B;nc|ENSG00000107242|O14986-2|PIP5K1B	nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000587482.1_1_19:3649915-3700388:-|nuORF	nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-SECPEP	A375_MHC_IP_R2	2	553.7154541015625	2	553.316232	1104.61791	-0.67115	-0.00037136	-0.026067	-1.4423E-05	-0.69722	-0.00038578	553.3161099568662	47.958	0.7047	48.719	48.429	49.134	0.76127					25	13	3	0	0	0	0.14554	1	17995	17995		49.527	7.6876	1	6211800			24194	12500;5384;8719	17594	17719	23683	23683					0.06978585165848017
KEAEIIKQL	9	Unmodified	_KEAEIIKQL_					0	0	0		ENSG00000155827|ENST00000389120|RNF20;RNF20|p.R619W|1|0.5|ENSG00000155827|chr9:101552707-101552707|C/T|missense_variant	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	A375_MHC_IP_R1	1	358.2850036621094	3	357.88513	1070.63356	0.13042	4.6675E-05	-0.70892	-0.00025371	-0.5785	-0.00020704	357.8849872202777	37.636	0.51087	37.636	37.351	37.862	0					19	9	3	0	0	0	0.10518	1	12708	12708		49.742	5.35	1	5201100			24195	6157	17595	17720	23684	23684					0.10106871682887686
KEAEIIKQL	9	Unmodified	_KEAEIIKQL_					0	0	0		ENSG00000155827|ENST00000389120|RNF20;RNF20|p.R619W|1|0.5|ENSG00000155827|chr9:101552707-101552707|C/T|missense_variant	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-SECPEP	A375_MHC_IP_R1	1	536.7236938476562	2	536.324057	1070.63356	-0.64037	-0.00034345	-0.080807	-4.3339E-05	-0.72118	-0.00038678	536.3240227825163	37.633	0.51055	37.633	37.402	37.913	0					23	9	3	0	0	0	0.013591	1	12682	12682		118.07	18.313	1	20122000			24196	6157	17595	17720	23685	23685					0.10106871682887686
KEAEIIKQL	9	Unmodified	_KEAEIIKQL_					0	0	0		ENSG00000155827|ENST00000389120|RNF20;RNF20|p.R619W|1|0.5|ENSG00000155827|chr9:101552707-101552707|C/T|missense_variant	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-SECPEP	A375_MHC_IP_R2	2	536.7235107421875	2	536.324057	1070.63356	-1.3046	-0.00069967	0.29316	0.00015723	-1.0114	-0.00054244	536.3241743911955	36.68	0.50838	37.451	37.207	37.716	0.7709					24	9	4	0	0	0	0.025037	1	13349	13349		100.09	16.662	1	9588000			24197	6157	17595	17720	23686	23686					0.10106871682887686
KEAESQAYF	9	Unmodified	_KEAESQAYF_					0	0	0		ENST00000295878.7_1_3:113772468-113775386:-|nuORF	ENST00000295878.7_1_3:113772468-113775386:-|nuORF	ENST00000295878.7_1_3:113772468-113775386:-|nuORF	MSMS	A375_MHC_IP_R1	1	536.7236938476562	2	536.750921	1071.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.585	1	37.585	37.085	38.085	0								0	0	0	0.15142	1	12682	12682		19.257	2.3147	1				24198	10499	17596	17721	23687	23687					-0.04559430552990307
KEAFVVEEW	9	Unmodified	_KEAFVVEEW_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	A375_MHC_IP_R1	1	569.3195190429688	2	568.784764	1135.55498	-0.44444	-0.00025279	0.564	0.00032079	0.11955	6.8001E-05	568.784709866804	80.365	1.3263	80.365	79.418	80.744	0					29	25	2	0	0	0	0.018166	1	29320	29320		83.429	39.57	1	4775300			24199	8584	17597	17722	23688	23688					-0.007379806221706531
KEAGIVLSSFF	11	Unmodified	_KEAGIVLSSFF_					0	0	0		nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9;nc|ENSG00000101194|Q9BYT1-3|SLC17A9;ENST00000488738.5_1_20:61584086-61594126:+|nuORF	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MULTI-SECPEP	A375_MHC_IP_R1	1	1197.8997802734375	1	1197.6514	1196.64412	-0.25263	-0.00030257	-4.0649	-0.0048684	-4.3176	-0.0051709	1197.6456451870793	132.04	0.30159	132.04	131.83	132.13	0					7	5	2	0	0	0	0.9574	1	50925	50925		19.362	8.5624	1	5655500			24200	2270	17598	17723	23689	23689					0.05366854337307814
KEAIYKERW	9	Unmodified	_KEAIYKERW_					0	0	0		nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	MULTI-SECPEP	A375_MHC_IP_R1	1	408.6239318847656	3	408.224146	1221.65061	-0.30853	-0.00012595	1.5151	0.00061848	1.2065	0.00049254	408.2253036074685	25.588	0.76158	25.588	25.46	26.221	0					24	14	3	0	0	0	0.34544	1	7520	7520		30.431	16.213	1	10362000			24201	7918	17599	17724	23690	23690					0.04864792288708486
KEAIYKERW	9	Unmodified	_KEAIYKERW_					0	0	0		nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	MULTI-MSMS	A375_MHC_IP_R2	2	408.6241455078125	3	408.224146	1221.65061	-0.41197	-0.00016818	2.3073	0.00094191	1.8954	0.00077373	408.22550387543856	25.062	0.81444	25.706	25.414	26.229	0.64368					31	15	3	0	0	0	0.012229	1	8319	8319		93.448	61.813	1	8428000			24202	7918	17599	17724	23691	23691					0.04864792288708486
KEALMHLGGIV	11	Unmodified	_KEALMHLGGIV_					0	0	0		ENSG00000182752|ENST00000328252|PAPPA	ENSG00000182752|ENST00000328252|PAPPA	ENSG00000182752|ENST00000328252|PAPPA	MULTI-MSMS	A375_MHC_IP_R2	2	389.9206848144531	3	389.889998	1166.64816	-0.5691	-0.00022189	0.20597	8.0306E-05	-0.36313	-0.00014158	389.89002524384523	24.784	1.0163	25.428	25.212	26.229	0.64368					38	19	3	0	0	0	0.7328	1	8364	8364		6.2344	0.028574	1	11628000			24203	8433	17600	17725	23692	23692					0.07150620559400522
KEALPKAAF	9	Unmodified	_KEALPKAAF_					0	0	0		ENSG00000113141|ENST00000417647|IK;ENST00000515592.1_1_5:140041093-140041799:+|nuORF	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-SECPEP	A375_MHC_IP_R1	1	488.18682861328125	2	487.78711	973.559667	-0.33418	-0.00016301	-0.092559	-4.5149E-05	-0.42674	-0.00020816	487.78704007472504	34.431	0.80925	34.431	34.052	34.861	0					52	15	5	0	0	0	0.028087	1	11304	11304		96.367	50.346	1	187550000			24204	3127	17601	17726	23693	23693					0.0718294831123103
KEALPKAAF	9	Unmodified	_KEALPKAAF_					0	0	0		ENSG00000113141|ENST00000417647|IK;ENST00000515592.1_1_5:140041093-140041799:+|nuORF	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-SECPEP	A375_MHC_IP_R2	2	488.1865234375	2	487.78711	973.559667	-1.065	-0.00051951	0.22554	0.00011002	-0.83949	-0.00040949	487.7872105540289	33.571	1.013	34.324	33.891	34.904	0.75225					52	19	5	0	0	0	0.0059578	1	11995	11995		136.39	84.124	1	188740000			24205	3127	17601	17726	23694	23694					0.0718294831123103
KEALVTDSL	9	Unmodified	_KEALVTDSL_					0	0	0			REV__TMEM132D|p.I650V|1|0.19|ENSG00000151952|chr12:129078701-129078701|T/C|missense_variant	REV__TMEM132D|p.I650V|1|0.19|ENSG00000151952|chr12:129078701-129078701|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	488.1865234375	2	488.27149	974.528426	-1.0265	-0.00050119	-0.4901	-0.0002393	-1.5166	-0.00074049	488.27130592829803	33.541	0.50803	34.294	33.942	34.45	0.75225					18	9	3	0	0	0	0.10411	1	11995	11995		49.933	0	1	4930500	+		24206	28130	17602	17727	23695	23695					0.040143304864727725
KEALVTDSL	9	Unmodified	_KEALVTDSL_					0	0	0			REV__TMEM132D|p.I650V|1|0.19|ENSG00000151952|chr12:129078701-129078701|T/C|missense_variant	REV__TMEM132D|p.I650V|1|0.19|ENSG00000151952|chr12:129078701-129078701|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	488.6710510253906	2	488.27149	974.528426	-1.0265	-0.00050119	-0.4901	-0.0002393	-1.5166	-0.00074049	488.27130592829803	33.541	0.50803	34.294	33.942	34.45	0.75225					18	9	3	0	0	0	0.28216	1	12039	12039		34.402	0	1	4930500	+		24207	28130	17602	17727	23696	23696					0.040143304864727725
KEAVLQYFKE	10	Unmodified	_KEAVLQYFKE_					0	0	0		nc|ENSG00000068885|Q9P2H3-3|IFT80;ENSG00000213186|ENST00000309784|TRIM59	nc|ENSG00000068885|Q9P2H3-3|IFT80	nc|ENSG00000068885|Q9P2H3-3|IFT80	MULTI-SECPEP	A375_MHC_IP_R1	1	419.2954406738281	3	418.895806	1253.66559	-0.023225	-9.7291E-06	1.1282	0.00047261	1.105	0.00046288	418.89570792890277	41.049	0.55516	41.049	40.813	41.368	0					39	10	5	0	0	0	0.68214	1	14128	14128		37.771	6.3095	1	25111000			24208	14476	17603	17728	23697	23697					0.048902393660455346
KEAWFPASF	9	Unmodified	_KEAWFPASF_					0	0	0		nc|ENSG00000228741|Q96N96-5|SPATA13;nc|ENSG00000228741|Q96N96-4|SPATA13;nc|ENSG00000228741|Q96N96|SPATA13;ENSG00000182957|ENST00000382108|SPATA13;nc|ENSG00000228741|Q96N96-2|SPATA13;nc|ENSG00000228741|Q96N96-3|SPATA13	nc|ENSG00000228741|Q96N96-5|SPATA13	nc|ENSG00000228741|Q96N96-5|SPATA13	MULTI-SECPEP	A375_MHC_IP_R2	2	542.16796875	2	541.768917	1081.52328	-0.83144	-0.00045045	1.6096	0.00087202	0.77815	0.00042158	542.2720334159211	96.212	0.60938	96.963	96.602	97.211	0.75045					16	11	2	0	0	0	0.40377	1	36547	36547		34.932	18.783	1	2110300			24209	8450	17604	17729	23698	23698					-0.014219285855006092
KECDFQTKF	9	Unmodified	_KECDFQTKF_					0	0	0		nc|ENSG00000172936|Q99836-2|MYD88;nc|ENSG00000172936|Q99836-5|MYD88;ENSG00000172936|ENST00000650905|MYD88;nc|ENSG00000172936|Q99836-6|MYD88;ENST00000481122.5_1_3:38180729-38182774:+|nuORF	nc|ENSG00000172936|Q99836-2|MYD88	nc|ENSG00000172936|Q99836-2|MYD88	MULTI-MSMS	A375_MHC_IP_R1	1	573.6676025390625	2	573.268424	1144.5223	-0.05432	-3.114E-05	-0.18534	-0.00010625	-0.23966	-0.00013739	573.2681289845019	37.376	0.45898	37.376	37.148	37.607	0					16	8	2	0	0	0	0.0065872	1	12611	12611		165.58	97.504	1	4448700			24210	7748	17605	17730	23699	23699					-0.04418511016683624
KECDFQTKF	9	Unmodified	_KECDFQTKF_					0	0	0		nc|ENSG00000172936|Q99836-2|MYD88;nc|ENSG00000172936|Q99836-5|MYD88;ENSG00000172936|ENST00000650905|MYD88;nc|ENSG00000172936|Q99836-6|MYD88;ENST00000481122.5_1_3:38180729-38182774:+|nuORF	nc|ENSG00000172936|Q99836-2|MYD88	nc|ENSG00000172936|Q99836-2|MYD88	MULTI-SECPEP	A375_MHC_IP_R2	2	573.6682739257812	2	573.268424	1144.5223	-0.60298	-0.00034567	0.15765	9.0378E-05	-0.44533	-0.00025529	573.2685061138832	36.571	0.55908	37.342	37.056	37.615	0.7709					25	10	3	0	0	0	0.062502	1	13310	13310		65.474	34.837	1	3963300			24211	7748	17605	17730	23700	23700					-0.04418511016683624
KECHCNEL	8	Unmodified	_KECHCNEL_					0	0	0			REV__nc|ENSG00000165973|Q92832-2|NELL1	REV__nc|ENSG00000165973|Q92832-2|NELL1	MULTI-SECPEP	A375_MHC_IP_R2	2	488.6529541015625	2	488.20477	974.394986	-1.1042	-0.00053906	1.2432	0.00060695	0.13906	6.7888E-05	488.2053861897677	33.793	0.40475	34.545	34.348	34.753	0.75225					12	7	2	0	0	0	0.972	1	12089	12089		5.2307	0	1	1599000	+		24212	20641	17606	17731	23701	23701					-0.09323555162541197
KEDATKGKFAF	11	Unmodified	_KEDATKGKFAF_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	A375_MHC_IP_R1	1	414.95562744140625	3	414.555672	1240.64519	0.25483	0.00010564	-0.16872	-6.9944E-05	0.086111	3.5698E-05	414.55546535671385	27.457	0.55622	27.457	27.229	27.786	0					21	10	3	0	0	0	0.094476	1	8361	8361		59.496	38.625	1	5544700			24213	7497	17607	17732	23702	23702					0.03449068706231628
KEDATKGKFAF	11	Unmodified	_KEDATKGKFAF_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	A375_MHC_IP_R2	2	414.955322265625	3	414.555672	1240.64519	-0.27375	-0.00011348	-0.16454	-6.8213E-05	-0.43829	-0.0001817	414.5556234021789	26.803	0.45984	27.463	27.212	27.671	0.65992					18	8	3	0	0	0	0.38403	1	9110	9110		38.559	25.04	1	4312900			24214	7497	17607	17732	23703	23703					0.03449068706231628
KEDDEPEEED	10	Unmodified	_KEDDEPEEED_					0	0	0		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	MSMS	A375_MHC_IP_R2	2	617.7489013671875	2	617.73332	1233.45209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.39	1	136.51	136.01	137.01	0.11134								0	0	0	0.15541	1	53578	53578		3.2813	0.28607	1				24215	5103	17608	17733	23704	23704					-0.15530182662132574
KEDEFGYSW	9	Unmodified	_KEDEFGYSW_					0	0	0		ENST00000539508.5_1_9:13136054-13190160:-|nuORF;MPDZ|p.G1669Cfs*20|1|0.13|ENSG00000107186|chr9:13122119-13122120|-/AGCCAGGCCGGCA|frameshift_variant;nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ	ENST00000539508.5_1_9:13136054-13190160:-|nuORF	ENST00000539508.5_1_9:13136054-13190160:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	581.1483764648438	2	580.748379	1159.4822	-0.1854	-0.00010767	-0.071496	-4.1521E-05	-0.2569	-0.00014919	580.7481789046508	73.191	0.55665	73.191	72.88	73.437	0					21	10	3	0	0	0	0.03341	1	26632	26632		83.429	54.347	1	4850400			24216	2731	17609	17734	23705	23705					-0.0911573441562723
KEDEFGYSW	9	Unmodified	_KEDEFGYSW_					0	0	0		ENST00000539508.5_1_9:13136054-13190160:-|nuORF;MPDZ|p.G1669Cfs*20|1|0.13|ENSG00000107186|chr9:13122119-13122120|-/AGCCAGGCCGGCA|frameshift_variant;nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ	ENST00000539508.5_1_9:13136054-13190160:-|nuORF	ENST00000539508.5_1_9:13136054-13190160:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	581.1480712890625	2	580.748379	1159.4822	-0.43286	-0.00025138	-0.19453	-0.00011298	-0.6274	-0.00036436	580.7482461456357	72.568	0.55899	73.303	73.022	73.581	0.73541					23	10	3	0	0	0	0.11849	1	27514	27514		70.332	45.658	1	4846100			24217	2731	17609	17734	23706	23706					-0.0911573441562723
KEDESLEREY	10	Unmodified	_KEDESLEREY_					0	0	0			REV__tr|U7SR06|U7SR06_FUSNUReleasefactorglutaminemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prmCPE=3SV=1	REV__tr|U7SR06|U7SR06_FUSNUReleasefactorglutaminemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prmCPE=3SV=1	MSMS	A375_MHC_IP_R2	2	649.2136840820312	2	649.298964	1296.58338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.332	1	61.077	60.577	61.577	0.74503								0	0	0	0.14804	1	22840	22840		21.537	7.1316	1		+		24218	28391	17610	17735	23707	23707					-0.05305327503560875
KEDIEKFF	8	Unmodified	_KEDIEKFF_					0	0	0		tr|U7SUC7|U7SUC7_FUSNU8-amino-7-oxononanoatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01104PE=4SV=1	tr|U7SUC7|U7SUC7_FUSNU8-amino-7-oxononanoatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01104PE=4SV=1	tr|U7SUC7|U7SUC7_FUSNU8-amino-7-oxononanoatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01104PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	528.674072265625	2	528.274032	1054.53351	-0.44676	-0.00023601	-0.1512	-7.9876E-05	-0.59796	-0.00031589	528.2738884404207	97.467	1.1161	97.467	96.883	97.999	0					39	21	3	0	0	0	0.8957	1	35761	35761		28.487	0	1	5927900			24219	29757	17611	17736	23708	23708					0.008426343491009902
KEDIFEDLRN	10	Unmodified	_KEDIFEDLRN_					0	0	0		nc|ENSG00000162643|Q8IWG1-2|DNAI3;ENSG00000162643|ENST00000294664|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	MULTI-MSMS	A375_MHC_IP_R1	1	426.91815185546875	3	426.882337	1277.62518	0.25979	0.0001109	-0.4434	-0.00018928	-0.1836	-7.8377E-05	426.88229100737084	22.704	0.35346	22.704	22.52	22.873	0					15	6	4	0	0	0	0.7154	1	6187	6187		5.4027	0.35519	1	3336600			24220	6572	17612	17737	23709	23709					-0.0025272702439451677
KEDILTVHLR	10	Unmodified	_KEDILTVHLR_					0	0	0		tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1	tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1	tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1	MSMS	A375_MHC_IP_R2	2	408.6205749511719	3	408.575067	1222.70337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.162	1	47.923	47.423	48.423	0.76128								0	0	0	0.15382	1	17678	17678		8.4443	0.49891	1				24221	29880	17613	17738	23710	23710					0.10092750351486757
KEDKERERKEW	11	Unmodified	_KEDKERERKEW_					0	0	0			REV__ENSG00000154479|ENST00000447353|CFAP210	REV__ENSG00000154479|ENST00000447353|CFAP210	MULTI-MSMS	A375_MHC_IP_R2	2	511.9374694824219	3	511.598711	1531.7743	-1.084	-0.00055457	-0.70279	-0.00035955	-1.7868	-0.00091411	511.5983072702612	20.981	0.40483	21.592	21.312	21.717	0.61029					12	7	2	0	0	0	0.73891	1	6614	6614		0.40827	0	1	2504200	+		24222	19886	17614	17739	23711	23711					0.02968798598385547
KEDLKKTYLK	10	Unmodified	_KEDLKKTYLK_					0	0	0		tr|U7SF08|U7SF08_FUSNUCRISPRtypeIII-a/mtube-associatedproteincsm6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02349PE=4SV=1	tr|U7SF08|U7SF08_FUSNUCRISPRtypeIII-a/mtube-associatedproteincsm6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02349PE=4SV=1	tr|U7SF08|U7SF08_FUSNUCRISPRtypeIII-a/mtube-associatedproteincsm6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02349PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	422.63067626953125	3	422.586972	1264.73909	-0.4571	-0.00019316	-0.12188	-5.1507E-05	-0.57899	-0.00024467	422.5869983483811	20.311	0.6611	20.922	20.651	21.312	0.61029					21	12	3	0	0	0	0.68889	1	6380	6380		14.218	1.9906	1	1210800			24223	29389	17615	17740	23712	23712					0.11730787808483001
KEDLVFIFW	9	Unmodified	_KEDLVFIFW_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65623404-65625570:-|nuORF;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2	ENSG00000172757|ENST00000308162|CFL1;nc|ENSG00000165410|Q9Y281-3|CFL2	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	A375_MHC_IP_R1	1	599.2200317382812	2	598.82115	1195.62775	-0.61073	-0.00036572	-0.4228	-0.00025318	-1.0335	-0.0006189	598.8205232984141	130.54	0.20407	130.54	130.41	130.62	0					8	3	3	0	0	0	0.032333	1	50280	50280		72.968	29.11	1	35322000			24224	7732;6948	17616	17741	23713	23713					0.037757731712190434
KEDLVSQGF	9	Unmodified	_KEDLVSQGF_					0	0	0		ENSG00000167770|ENST00000538426|OTUB1;nc|ENSG00000167770|Q96FW1-2|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	MULTI-MSMS	A375_MHC_IP_R1	1	512.16064453125	2	511.761289	1021.50803	0.041225	2.1097E-05	-0.83259	-0.00042609	-0.79137	-0.00040499	511.7610303943312	49.047	0.55542	49.047	48.78	49.336	0					22	10	3	0	0	0	0.0064781	1	17324	17324		132.38	59.412	1	4761100			24225	7222	17617	17742	23714	23714					-0.0018684017333043812
KEDLVSQGF	9	Unmodified	_KEDLVSQGF_					0	0	0		ENSG00000167770|ENST00000538426|OTUB1;nc|ENSG00000167770|Q96FW1-2|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	MULTI-MSMS	A375_MHC_IP_R2	2	512.1607055664062	2	511.761289	1021.50803	-0.70269	-0.00035961	-0.12143	-6.2141E-05	-0.82412	-0.00042175	511.7613420597773	48.343	0.5531	49.1	48.779	49.332	0.75737					21	10	3	0	0	0	0.0098859	1	18112	18112		117.76	46.627	1	3700800			24226	7222	17617	17742	23715	23715					-0.0018684017333043812
KEDNKAEGHN	10	Unmodified	_KEDNKAEGHN_					0	0	0			REV__ENST00000434116.6_1_15:65916409-65944223:+|nuORF;REV__nc|ENSG00000074621|O60721-3|SLC24A1	REV__nc|ENSG00000074621|O60721-3|SLC24A1	MSMS	A375_MHC_IP_R1	1	571.203369140625	2	571.265259	1140.51596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.013	1	49.013	48.513	49.513	0								0	0	0	0.14555	1	17317	17317		26.268	9.3258	1		+		24227	24736;16638	17618	17743	23716	23716					-0.04867312923852296
KEDTKVKKL	9	Unmodified	_KEDTKVKKL_					0	0	0			REV__ENST00000367326.1_1_6:150959234-150971920:+|nuORF	REV__ENST00000367326.1_1_6:150959234-150971920:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	363.6287536621094	3	363.560646	1087.66011	-0.40488	-0.0001472	1.4181	0.00051557	1.0132	0.00036837	363.56121159108056	21.368	0.86332	21.987	21.422	22.285	0.61932					26	16	2	0	0	0	0.73491	1	6821	6821		3.8763	0	1	2468400	+		24228	23968	17619	17744	23717	23717					0.11978560574220865
KEEEDEQEL	9	Unmodified	_KEEEDEQEL_					0	0	0			REV__ENSG00000112659|ENST00000252050|CUL9	REV__ENSG00000112659|ENST00000252050|CUL9	MSMS	A375_MHC_IP_R1	1	574.7027587890625	2	574.751315	1147.48808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.744	1	25.744	25.244	26.244	0								0	0	0	0.15283	1	7567	7567		16.942	1.6938	1		+		24229	17745	17620	17745	23718	23718					-0.07976680694582683
KEEEDEQEL	9	Unmodified	_KEEEDEQEL_					0	0	0			REV__ENSG00000112659|ENST00000252050|CUL9	REV__ENSG00000112659|ENST00000252050|CUL9	MSMS	A375_MHC_IP_R1	1	574.7028198242188	2	574.751315	1147.48808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.315	1	26.315	25.815	26.815	0								0	0	0	0.15283	1	7825	7825		16.942	6.1428	1		+		24230	17745	17620	17745	23719	23719					-0.07976680694582683
KEEEDEQEL	9	Unmodified	_KEEEDEQEL_					0	0	0			REV__ENSG00000112659|ENST00000252050|CUL9	REV__ENSG00000112659|ENST00000252050|CUL9	MSMS	A375_MHC_IP_R2	2	574.7031860351562	2	574.751315	1147.48808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.675	1	26.335	25.835	26.835	0.65992								0	0	0	0.14677	1	8605	8605		26.884	11.036	1		+		24231	17745	17620	17745	23720	23720					-0.07976680694582683
KEEEIRKLAER	11	Unmodified	_KEEEIRKLAER_					0	0	0		ENSG00000089154|ENST00000300648|GCN1;ENST00000548132.1_1_12:120592933-120593466:-|nuORF	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MSMS	A375_MHC_IP_R2	2	700.808349609375	2	700.89644	1399.77833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.59	1	125.88	125.38	126.38	0.2951								0	0	0	0.16152	1	49026	49026		10.8	3.1906	1				24232	1916	17621	17746	23721	23721					0.09442888092075918
KEEENLLFY	9	Unmodified	_KEEENLLFY_					0	0	0		ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	MULTI-SECPEP	A375_MHC_IP_R1	1	593.195556640625	2	592.795329	1183.5761	-0.5171	-0.00030653	0.4422	0.00026213	-0.074899	-4.44E-05	592.7955898289446	80.718	0.65912	80.718	80.34	80.999	0					28	12	3	0	0	0	0.083712	1	29453	29453		74.929	16.25	1	8606500			24233	6160	17622	17747	23722	23722					-0.00834015313330383
KEEENLLFY	9	Unmodified	_KEEENLLFY_					0	0	0		ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	MULTI-SECPEP	A375_MHC_IP_R2	2	593.195068359375	2	592.795329	1183.5761	-0.51697	-0.00030646	-0.021435	-1.2707E-05	-0.53841	-0.00031916	592.7952027959112	79.777	1.5213	80.521	79.693	81.214	0.74473					22	12	2	0	0	0	0.13064	1	30296	30296		65.235	15.302	1	5902800			24234	6160	17622	17747	23723	23723					-0.00834015313330383
KEEKILEEY	9	Unmodified	_KEEKILEEY_					0	0	0			REV__nc|ENSG00000164221|Q8NEF3|CCDC112	REV__nc|ENSG00000164221|Q8NEF3|CCDC112	MULTI-MSMS	A375_MHC_IP_R1	1	395.5935974121094	3	394.20805	1179.60232	0.071709	2.8268E-05	0.24643	9.7146E-05	0.31814	0.00012541	394.2081370904529	33.781	1.0623	33.781	33.445	34.507	0					63	20	5	0	0	0	0.64971	1	11107	11107		11.495	0	1	93360000	+		24235	20468	17623	17748	23724	23724					0.01970253858144133
KEEKILEEY	9	Unmodified	_KEEKILEEY_					0	0	0			REV__nc|ENSG00000164221|Q8NEF3|CCDC112	REV__nc|ENSG00000164221|Q8NEF3|CCDC112	MULTI-MSMS	A375_MHC_IP_R2	2	395.59332275390625	3	394.20805	1179.60232	-0.30629	-0.00012074	0.13379	5.2742E-05	-0.1725	-6.8E-05	394.208083159089	33.063	1.066	33.815	33.534	34.6	0.75225					63	20	5	0	0	0	0.69317	1	11844	11844		7.609	0	1	109950000	+		24236	20468	17623	17748	23725	23725					0.01970253858144133
KEEKQPKMRSS	11	Unmodified	_KEEKQPKMRSS_					0	0	0		PCLO|p.K3412M|1|0.04|ENSG00000186472|chr7:82950353-82950353|T/A|missense_variant	PCLO|p.K3412M|1|0.04|ENSG00000186472|chr7:82950353-82950353|T/A|missense_variant	PCLO|p.K3412M|1|0.04|ENSG00000186472|chr7:82950353-82950353|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	674.7554931640625	2	674.356093	1346.69763	-0.87201	-0.00058805	0.13483	9.0922E-05	-0.73718	-0.00049712	674.3559926772169	131.7	1.2084	131.7	131.18	132.38	0					56	23	3	0	0	0	0.73189	1	50707	50707		7.1017	0	1	13648000			24237	15143	17624	17749	23726	23726					0.038152837775442094
KEEKQPKMRSS	11	Unmodified	_KEEKQPKMRSS_					0	0	0		PCLO|p.K3412M|1|0.04|ENSG00000186472|chr7:82950353-82950353|T/A|missense_variant	PCLO|p.K3412M|1|0.04|ENSG00000186472|chr7:82950353-82950353|T/A|missense_variant	PCLO|p.K3412M|1|0.04|ENSG00000186472|chr7:82950353-82950353|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	674.7557983398438	2	674.356093	1346.69763	-0.68549	-0.00046226	0.22377	0.0001509	-0.46172	-0.00031136	674.3561351937283	131.59	1.1659	131.78	131.24	132.4	0.18954					54	22	3	0	0	0	0.73189	1	51675	51675		7.1017	1.8048	1	15430000			24238	15143	17624	17749	23727	23727					0.038152837775442094
KEELERTVHFY	11	Unmodified	_KEELERTVHFY_					0	0	0		CTAGE6|p.E441K|1|0.2|ENSG00000271321|chr7:143756338-143756338|C/T|missense_variant	CTAGE6|p.E441K|1|0.2|ENSG00000271321|chr7:143756338-143756338|C/T|missense_variant	CTAGE6|p.E441K|1|0.2|ENSG00000271321|chr7:143756338-143756338|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	725.7822875976562	2	725.869891	1449.72523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.25	1	106.01	105.51	106.51	0.76308								0	0	0	0.16247	1	39812	39812		10.8	0	1				24239	679	17625	17750	23728	23728					0.0183551030943363
KEENKEEHTIV	11	Unmodified	_KEENKEEHTIV_					0	0	0			REV__ADGRV1|p.R3330K|1|0.62|ENSG00000164199|chr5:90725168-90725168|G/A|missense_variant	REV__ADGRV1|p.R3330K|1|0.62|ENSG00000164199|chr5:90725168-90725168|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	452.9648742675781	3	452.564896	1354.67286	-0.22592	-0.00010224	-0.28974	-0.00013113	-0.51566	-0.00023337	452.5648141632451	59.13	0.50984	59.13	58.836	59.346	0					21	9	3	0	0	0	0.99732	1	21292	21292		4.1166	1.0444	1	2079900	+		24240	15333	17626	17751	23729	23729					0.00970927175808356
KEEPHKKQY	9	Unmodified	_KEEPHKKQY_					0	0	0			REV__ENSG00000148143|ENST00000277225|ZNF462	REV__ENSG00000148143|ENST00000277225|ZNF462	MSMS	A375_MHC_IP_R2	2	396.2762451171875	3	396.212017	1185.61422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.177	1	19.78	19.28	20.28	0.60308								0	0	0	0.14656	1	5864	5864		27.223	14.351	1		+		24241	19615	17627	17752	23730	23730					0.028839153919989258
KEEQFKQVF	9	Unmodified	_KEEQFKQVF_					0	0	0		ENSG00000168090|ENST00000303904|COPS6;ENST00000496358.1_1_7:99686670-99688376:+|nuORF	ENSG00000168090|ENST00000303904|COPS6;ENST00000496358.1_1_7:99686670-99688376:+|nuORF	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	A375_MHC_IP_R1	1	592.2115478515625	2	591.811313	1181.60807	-0.13985	-8.2763E-05	0.55108	0.00032614	0.41124	0.00024337	591.8114082922649	37.428	0.45993	37.428	37.198	37.658	0					17	8	3	0	0	0	0.0027032	2	12615	12615;12654		151.48	83.642	1	7162500			24242	7264;12723	17628	17753	23731;23732	23731					0.02453397160456916
KEEQFKQVF	9	Unmodified	_KEEQFKQVF_					0	0	0		ENSG00000168090|ENST00000303904|COPS6;ENST00000496358.1_1_7:99686670-99688376:+|nuORF	ENSG00000168090|ENST00000303904|COPS6;ENST00000496358.1_1_7:99686670-99688376:+|nuORF	ENSG00000168090|ENST00000303904|COPS6	MULTI-SECPEP	A375_MHC_IP_R1	1	395.61102294921875	3	394.876634	1181.60807	0.18708	7.3872E-05	0.041693	1.6464E-05	0.22877	9.0336E-05	395.21094038524177	37.408	0.56256	37.408	37.198	37.761	0					18	10	2	0	0	0	0.48845	1	12622	12622		37.075	6.6432	1	6079500			24243	7264;12723	17628	17753	23733	23733					0.02453397160456916
KEEQFKQVF	9	Unmodified	_KEEQFKQVF_					0	0	0		ENSG00000168090|ENST00000303904|COPS6;ENST00000496358.1_1_7:99686670-99688376:+|nuORF	ENSG00000168090|ENST00000303904|COPS6;ENST00000496358.1_1_7:99686670-99688376:+|nuORF	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	A375_MHC_IP_R2	2	395.2763977050781	3	394.876634	1181.60807	-0.45428	-0.00017938	0.42877	0.00016931	-0.025508	-1.0072E-05	394.8767883645065	36.486	0.71422	37.257	36.85	37.564	0.7709					29	13	3	0	0	0	0.058226	1	13311	13311		61.09	19.743	1	3073300			24244	7264;12723	17628	17753	23734	23734					0.02453397160456916
KEEQFKQVF	9	Unmodified	_KEEQFKQVF_					0	0	0		ENSG00000168090|ENST00000303904|COPS6;ENST00000496358.1_1_7:99686670-99688376:+|nuORF	ENSG00000168090|ENST00000303904|COPS6;ENST00000496358.1_1_7:99686670-99688376:+|nuORF	ENSG00000168090|ENST00000303904|COPS6	MULTI-SECPEP	A375_MHC_IP_R2	2	592.2109375	2	591.811313	1181.60807	-0.89006	-0.00052675	0.30315	0.00017941	-0.58691	-0.00034734	591.811353582219	36.461	0.457	37.232	37.056	37.513	0.7709					20	8	3	0	0	0	0.14068	1	13309	13309		75.571	13.969	1	4942300			24245	7264;12723	17628	17753	23735	23735					0.02453397160456916
KEEQVIQVW	9	Unmodified	_KEEQVIQVW_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-SECPEP	A375_MHC_IP_R2	2	580.211181640625	2	579.811313	1157.60807	-0.21133	-0.00012253	-0.49378	-0.0002863	-0.7051	-0.00040883	579.8109678171121	70.102	0.60895	70.836	70.54	71.149	0.73421					27	11	3	0	0	0	0.025235	1	26554	26554		107.19	45.585	1	7963500			24246	3490	17629	17754	23736	23736					0.035573971604890176
KEERAVIKAY	10	Unmodified	_KEERAVIKAY_					0	0	0		ENSG00000184209|ENST00000526639|SNRNP35;nc|ENSG00000184209|Q16560-2|SNRNP35	ENSG00000184209|ENST00000526639|SNRNP35	ENSG00000184209|ENST00000526639|SNRNP35	MULTI-SECPEP	A375_MHC_IP_R1	1	403.2996826171875	3	402.89955	1205.67682	-0.44526	-0.0001794	0.81615	0.00032883	0.37089	0.00014943	402.8998459767917	19.839	0.459	19.839	19.521	19.98	0					18	8	3	0	0	0	0.86608	1	5037	5037		22.775	7.8178	1	1969300			24247	8561	17630	17755	23737	23737					0.08221061460176315
KEERDLVNRL	10	Unmodified	_KEERDLVNRL_					0	0	0		nc|ENSG00000214826|Q92771|DDX12P	nc|ENSG00000214826|Q92771|DDX12P	nc|ENSG00000214826|Q92771|DDX12P	MSMS	A375_MHC_IP_R1	1	424.6269226074219	3	424.573726	1270.69935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.267	1	41.267	40.767	41.767	0								0	0	0	0.15475	1	14237	14237		5.4027	0.68679	1				24248	14898	17631	17756	23738	23738					0.07482660857795054
KEEVILETKA	10	Unmodified	_KEEVILETKA_					0	0	0		ENST00000467050.1_1_7:193951-194146:-|nuORF	ENST00000467050.1_1_7:193951-194146:-|nuORF	ENST00000467050.1_1_7:193951-194146:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	580.7325439453125	2	580.332079	1158.6496	0.30628	0.00017774	0.92913	0.0005392	1.2354	0.00071695	580.332484067419	45.055	0.35609	45.055	44.878	45.234	0					16	6	3	0	0	0	0.89761	1	15753	15753		19.626	6.7534	1	5814600			24249	12273	17632	17757	23739	23739					0.07662533129155236
KEEVILETKA	10	Unmodified	_KEEVILETKA_					0	0	0		ENST00000467050.1_1_7:193951-194146:-|nuORF	ENST00000467050.1_1_7:193951-194146:-|nuORF	ENST00000467050.1_1_7:193951-194146:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	580.732421875	2	580.332079	1158.6496	-0.19804	-0.00011493	1.1431	0.00066339	0.94508	0.00054846	580.3327235701831	44.232	0.40593	45.001	44.782	45.188	0.7691					17	7	3	0	0	0	0.83425	1	16494	16494		24.882	3.2914	1	4912400			24250	12273	17632	17757	23740	23740					0.07662533129155236
KEEWHFWISVY	11	Unmodified	_KEEWHFWISVY_					0	0	0		ENST00000398868.7_1_11:63410966-63411684:-|nuORF	ENST00000398868.7_1_11:63410966-63411684:-|nuORF	ENST00000398868.7_1_11:63410966-63411684:-|nuORF	MSMS	A375_MHC_IP_R2	2	508.64154052734375	3	508.58211	1522.7245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.083	1	50.837	50.337	51.337	0.75406								0	0	0	0.16309	1	18830	18830		2.6312	0.19645	1				24251	11530	17633	17758	23741	23741					-0.01595284339623504
KEEYKCSYS	9	Unmodified	_KEEYKCSYS_					0	0	0			REV__THRB|p.G149E|1|0.38|ENSG00000151090|chr3:24146761-24146761|C/T|missense_variant	REV__THRB|p.G149E|1|0.38|ENSG00000151090|chr3:24146761-24146761|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	568.7086791992188	2	568.750064	1135.48558	-0.70427	-0.00040055	0.42046	0.00023914	-0.28381	-0.00016142	568.7502759893949	52.155	0.35521	52.907	52.677	53.032	0.75225					11	6	2	0	0	0	0.67332	1	19559	19559		9.3831	9.3831	1	3010900	+		24252	28105	17634	17759	23742	23742					-0.07674807633270575
KEFAGKGLTF	10	Unmodified	_KEFAGKGLTF_					0	0	0		ENSG00000140650|ENST00000268261|PMM2;ENST00000567697.1_1_16:8904837-8941679:+|nuORF	ENSG00000140650|ENST00000268261|PMM2	ENSG00000140650|ENST00000268261|PMM2	MULTI-SECPEP	A375_MHC_IP_R1	1	549.7025146484375	2	549.303124	1096.5917	0.0084283	4.6297E-06	-0.67194	-0.0003691	-0.66351	-0.00036447	549.3027728637932	44.984	0.45674	44.984	44.827	45.284	0					19	8	3	0	0	0	0.54155	1	15713	15713		49.742	30.38	1	5541900			24253	5174	17635	17760	23743	23743					0.04726315994366814
KEFAGKGLTF	10	Unmodified	_KEFAGKGLTF_					0	0	0		ENSG00000140650|ENST00000268261|PMM2;ENST00000567697.1_1_16:8904837-8941679:+|nuORF	ENSG00000140650|ENST00000268261|PMM2	ENSG00000140650|ENST00000268261|PMM2	MULTI-SECPEP	A375_MHC_IP_R2	2	549.7022705078125	2	549.303124	1096.5917	-0.63213	-0.00034723	-0.50082	-0.0002751	-1.1329	-0.00062233	549.3028923425915	44.088	0.45511	44.858	44.631	45.086	0.7691					21	8	3	0	0	0	0.49709	1	16450	16450		53.47	20.025	1	5205800			24254	5174	17635	17760	23744	23744					0.04726315994366814
KEFAQIIKI	9	Unmodified	_KEFAQIIKI_					0	0	0		nc|ENSG00000091483|P07954-2|FH;ENSG00000091483|ENST00000366560|FH	nc|ENSG00000091483|P07954-2|FH	nc|ENSG00000091483|P07954-2|FH	MULTI-SECPEP	A375_MHC_IP_R1	1	545.7368774414062	2	545.336967	1088.65938	-0.65009	-0.00035452	-0.40953	-0.00022333	-1.0596	-0.00057785	545.3370734607607	65.301	0.51009	65.301	65.055	65.565	0					13	9	2	0	0	0	0.72222	1	23664	23664		20.415	20.415	1	1631400			24255	1979	17636	17761	23745	23745					0.11859765925169086
KEFDGKSLV	9	Unmodified	_KEFDGKSLV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;HSP90AB1|p.I628Sfs*56|1|0.12|ENSG00000096384|chr6:44253195-44253195|A/-|frameshift_variant;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000517330.1_1_5:77337712-77337985:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-SECPEP	A375_MHC_IP_R1	1	511.9885559082031	2	511.779482	1021.54441	-0.42003	-0.00021496	-0.16041	-8.2094E-05	-0.58044	-0.00029705	511.77933225433054	33.568	0.76041	33.568	33.241	34.001	0					39	14	4	0	0	0	0.011204	1	10998	10998		114.5	51.924	1	65793000			24256	2057	17637	17762	23746	23746					0.034500367233931684
KEFDGKSLV	9	Unmodified	_KEFDGKSLV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;HSP90AB1|p.I628Sfs*56|1|0.12|ENSG00000096384|chr6:44253195-44253195|A/-|frameshift_variant;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000517330.1_1_5:77337712-77337985:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1790161132812	2	511.779482	1021.54441	-0.8203	-0.00041981	0.076059	3.8926E-05	-0.74424	-0.00038089	511.77949313866907	32.808	0.91689	33.545	33.213	34.13	0.73692					41	17	4	0	0	0	0.010976	1	11667	11667		147.24	58.287	1	59471000			24257	2057	17637	17762	23747	23747					0.034500367233931684
KEFDHPNVM	9	Unmodified	_KEFDHPNVM_					0	0	0		nc|ENSG00000167601|P30530-2|AXL;ENSG00000167601|ENST00000301178|AXL	nc|ENSG00000167601|P30530-2|AXL	nc|ENSG00000167601|P30530-2|AXL	MULTI-MSMS	A375_MHC_IP_R1	1	558.6902465820312	2	558.760766	1115.50698	-0.49382	-0.00027592	-0.33447	-0.00018689	-0.82829	-0.00046281	558.7602815127246	31.812	0.40832	31.812	31.667	32.075	0					9	7	2	0	0	0	0.50892	1	10224	10224		19.362	5.4559	1	1545600			24258	7198	17638	17763	23748	23748					-0.04615377813888699
KEFDHPNVM	9	Unmodified	_KEFDHPNVM_					0	0	0		nc|ENSG00000167601|P30530-2|AXL;ENSG00000167601|ENST00000301178|AXL	nc|ENSG00000167601|P30530-2|AXL	nc|ENSG00000167601|P30530-2|AXL	MSMS	A375_MHC_IP_R2	2	558.6900024414062	2	558.760766	1115.50698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.102	1	31.821	31.321	32.321	0.71857								0	0	0	0.11268	1	10980	10980		38.176	12.776	1				24259	7198	17638	17763	23749	23749					-0.04615377813888699
KEFDHPNVM	9	Unmodified	_KEFDHPNVM_					0	0	0		nc|ENSG00000167601|P30530-2|AXL;ENSG00000167601|ENST00000301178|AXL	nc|ENSG00000167601|P30530-2|AXL	nc|ENSG00000167601|P30530-2|AXL	MULTI-SECPEP	A375_MHC_IP_R2	2	373.4803466796875	3	372.842936	1115.50698	0.40033	0.00014926	1.1069	0.00041272	1.5073	0.00056198	372.8428716542803	31.059	0.45821	31.777	31.567	32.026	0.71857					12	8	2	0	0	0	0.76827	1	10983	10983		4.1895	1.691	1	1951700			24260	7198	17638	17763	23750	23750					-0.04615377813888699
KEFDHPNVM	9	Oxidation (M)	_KEFDHPNVM(Oxidation (M))_		KEFDHPNVM(1)		KEFDHPNVM(46)	0	0	1		nc|ENSG00000167601|P30530-2|AXL;ENSG00000167601|ENST00000301178|AXL	nc|ENSG00000167601|P30530-2|AXL	nc|ENSG00000167601|P30530-2|AXL	MULTI-MSMS	A375_MHC_IP_R2	2	567.1582641601562	2	566.758223	1131.50189	-0.72593	-0.00041142	0.37614	0.00021318	-0.34978	-0.00019824	566.7583568634969	20.8	0.60885	21.41	20.958	21.566	0.61029					21	11	2	0	0	0	0.12748	1	6529	6529		45.74	28.798	1	1137800			24261	7198	17638	17764	23751	23751		364			-0.058596816765202675
KEFEEARKW	9	Unmodified	_KEFEEARKW_					0	0	0		ENSG00000177239|ENST00000371589|MAN1B1	ENSG00000177239|ENST00000371589|MAN1B1	ENSG00000177239|ENST00000371589|MAN1B1	MULTI-SECPEP	A375_MHC_IP_R1	1	408.61175537109375	3	408.212017	1221.61422	-0.41161	-0.00016802	-0.23448	-9.5719E-05	-0.64609	-0.00026374	408.2118656129512	23.915	0.20342	23.915	23.787	23.991	0					5	3	2	0	0	0	0.6191	1	6701	6701		28.234	8.6077	1	5988800			24262	8071	17639	17765	23752	23752					0.012279153919735109
KEFEEARKW	9	Unmodified	_KEFEEARKW_					0	0	0		ENSG00000177239|ENST00000371589|MAN1B1	ENSG00000177239|ENST00000371589|MAN1B1	ENSG00000177239|ENST00000371589|MAN1B1	MULTI-SECPEP	A375_MHC_IP_R2	2	408.6120300292969	3	408.212017	1221.61422	-0.31907	-0.00013025	1.0087	0.00041175	0.68961	0.00028151	408.21201417412516	23.107	0.55966	23.737	23.42	23.979	0.63015					18	10	3	0	0	0	0.26374	1	7426	7426		55.235	40.397	1	4076200			24263	8071	17639	17765	23753	23753					0.012279153919735109
KEFEKEGY	8	Unmodified	_KEFEKEGY_					0	0	0		tr|U7SVV7|U7SVV7_FUSNUOxygen-independentcoproporphyrinogenIIIoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01354PE=4SV=1	tr|U7SVV7|U7SVV7_FUSNUOxygen-independentcoproporphyrinogenIIIoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01354PE=4SV=1	tr|U7SVV7|U7SVV7_FUSNUOxygen-independentcoproporphyrinogenIIIoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01354PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	515.64794921875	2	515.248015	1028.48148	-0.92102	-0.00047455	0.17204	8.8644E-05	-0.74898	-0.00038591	515.248123267068	54.864	0.40862	55.614	55.37	55.779	0.75075					12	7	2	0	0	0	0.76996	1	20731	20731		29.082	0	1	3265200			24264	29799	17640	17766	23754	23754					-0.03162529064638875
KEFELRSSW	9	Unmodified	_KEFELRSSW_					0	0	0		nc|ENSG00000109689|Q9P246-3|STIM2;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2	nc|ENSG00000109689|Q9P246-3|STIM2	nc|ENSG00000109689|Q9P246-3|STIM2	MULTI-SECPEP	A375_MHC_IP_R1	1	394.9365539550781	3	394.536501	1180.58767	-0.008923	-3.5204E-06	0.15298	6.0357E-05	0.14406	5.6836E-05	394.5365185213	52.33	0.50688	52.33	52.136	52.643	0					16	9	2	0	0	0	0.74327	1	18636	18636		13.519	5.5733	1	2070700			24265	2885	17641	17767	23755	23755					0.004602265006496964
KEFELRSSW	9	Unmodified	_KEFELRSSW_					0	0	0		nc|ENSG00000109689|Q9P246-3|STIM2;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2	nc|ENSG00000109689|Q9P246-3|STIM2	nc|ENSG00000109689|Q9P246-3|STIM2	MULTI-MSMS	A375_MHC_IP_R2	2	394.9361572265625	3	394.536501	1180.58767	-0.40627	-0.00016029	-0.1625	-6.4112E-05	-0.56878	-0.0002244	394.5363764570139	51.593	0.61103	52.345	52.169	52.78	0.75225					19	11	2	0	0	0	0.37338	1	19458	19458		19.987	6.4682	1	2180600			24266	2885	17641	17767	23756	23756					0.004602265006496964
KEFEPLLNW	9	Unmodified	_KEFEPLLNW_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000551983.1_1_12:104335630-104337190:+|nuORF;ENST00000415545.2_1_1:92108345-92109332:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-SECPEP	A375_MHC_IP_R1	1	588.708251953125	2	588.308406	1174.60226	-0.049476	-2.9107E-05	0.11308	6.6525E-05	0.063602	3.7418E-05	588.308425225016	107.72	1.1204	107.72	107.34	108.46	0					61	21	4	0	0	0	0.03341	1	39473	39473		93.166	36.989	1	51755000			24267	7095	17642	17768	23757	23757					0.02194298648782933
KEFEPLLNW	9	Unmodified	_KEFEPLLNW_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000551983.1_1_12:104335630-104337190:+|nuORF;ENST00000415545.2_1_1:92108345-92109332:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	A375_MHC_IP_R2	2	588.7078857421875	2	588.308406	1174.60226	-0.63774	-0.00037519	0.082154	4.8332E-05	-0.55559	-0.00032686	588.308416493744	106.86	1.0155	107.62	107.19	108.21	0.75977					55	19	4	0	0	0	0.0089677	1	40329	40329		117.76	39.033	1	49374000			24268	7095	17642	17768	23758	23758					0.02194298648782933
KEFFFVKVF	9	Unmodified	_KEFFFVKVF_					0	0	0		ENSG00000163568|ENST00000368130|AIM2	ENSG00000163568|ENST00000368130|AIM2	ENSG00000163568|ENST00000368130|AIM2	MULTI-SECPEP	A375_MHC_IP_R1	1	596.2340698242188	2	595.83406	1189.65357	-0.35784	-0.00021322	-1.24	-0.00073885	-1.5979	-0.00095206	596.3345828889808	103.19	1.0187	103.19	102.61	103.63	0					26	19	2	0	0	0	0.32966	1	37941	37941		49.527	21.898	1	2326100			24269	6686	17643	17769	23759	23759					0.06632667413509807
KEFFFVKVF	9	Unmodified	_KEFFFVKVF_					0	0	0		ENSG00000163568|ENST00000368130|AIM2	ENSG00000163568|ENST00000368130|AIM2	ENSG00000163568|ENST00000368130|AIM2	MSMS	A375_MHC_IP_R2	2	595.8831176757812	2	595.83406	1189.65357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.31	1	103.07	102.57	103.57	0.76428								0	0	0	0.13927	1	38767	38767		29.841	11.694	1				24270	6686	17643	17769	23760	23760					0.06632667413509807
KEFFQIDGY	9	Unmodified	_KEFFQIDGY_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-MSMS	A375_MHC_IP_R1	1	573.7180786132812	2	573.776939	1145.53933	-0.43237	-0.00024808	0.079474	4.56E-05	-0.35289	-0.00020248	573.7769396834929	86.27	0.75873	86.27	85.87	86.629	0					37	14	4	0	0	0	0.0090499	2	31676	31561;31676		100.09	67.305	1	12062000			24271	9382	17644	17770	23761;23762	23762					-0.027622671392464326
KEFFQIDGY	9	Unmodified	_KEFFQIDGY_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-SECPEP	A375_MHC_IP_R2	2	574.17724609375	2	573.776939	1145.53933	-0.059223	-3.3981E-05	-0.46054	-0.00026424	-0.51976	-0.00029823	573.7766697540028	85.625	0.86423	86.361	85.933	86.797	0.73601					42	16	4	0	0	0	0.011253	1	32515	32515		160.69	118.85	1	10516000			24272	9382	17644	17770	23763	23763					-0.027622671392464326
KEFFSKPKY	9	Unmodified	_KEFFSKPKY_					0	0	0		ENST00000486520.1_1_21:48078635-48080886:+|nuORF;ENST00000482508.5_1_21:48063482-48080886:+|nuORF;ENSG00000160310|ENST00000355680|PRMT2	ENST00000486520.1_1_21:48078635-48080886:+|nuORF	ENST00000486520.1_1_21:48078635-48080886:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	391.6123352050781	3	391.881608	1172.623	-0.11756	-4.607E-05	0.059804	2.3436E-05	-0.057757	-2.2634E-05	391.8815519805702	26.92	0.55278	26.92	26.626	27.179	0					31	10	4	0	0	0	0.31062	1	8119	8119		22.775	12.624	1	13232000			24273	12525	17645	17771	23764	23764					0.04358889028480917
KEFFSKPKY	9	Unmodified	_KEFFSKPKY_					0	0	0		ENST00000486520.1_1_21:48078635-48080886:+|nuORF;ENST00000482508.5_1_21:48063482-48080886:+|nuORF;ENSG00000160310|ENST00000355680|PRMT2	ENST00000486520.1_1_21:48078635-48080886:+|nuORF	ENST00000486520.1_1_21:48078635-48080886:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	391.6120910644531	3	391.881608	1172.623	-0.59032	-0.00023134	0.047409	1.8579E-05	-0.54291	-0.00021276	391.88153679309954	26.238	0.50798	26.898	26.653	27.161	0.65992					17	9	2	0	0	0	0.44024	1	8890	8890		21.59	8.7175	1	15891000			24274	12525	17645	17771	23765	23765					0.04358889028480917
KEFFTKHKY	9	Unmodified	_KEFFTKHKY_					0	0	0		nc|ENSG00000117143|Q16222-2|UAP1;nc|ENSG00000117143|Q16222-3|UAP1;ENSG00000117143|ENST00000367925|UAP1	nc|ENSG00000117143|Q16222-2|UAP1	nc|ENSG00000117143|Q16222-2|UAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	410.2889099121094	3	409.888874	1226.64479	-0.20441	-8.3786E-05	-0.29172	-0.00011957	-0.49613	-0.00020336	409.88878437664164	19.296	0.3335	19.296	19.238	19.571	0					13	6	3	0	0	0	0.40495	1	4752	4752		37.771	24.156	1	17507000			24275	3459	17646	17772	23766	23766					0.04053693777063927
KEFGPVVIDY	10	Unmodified	_KEFGPVVIDY_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	A375_MHC_IP_R2	2	584.2081298828125	2	583.808239	1165.60193	-0.33852	-0.00019763	0.1109	6.4742E-05	-0.22762	-0.00013289	583.8082297129547	84.41	0.76113	85.146	84.813	85.574	0.73601					29	14	3	0	0	0	0.15631	1	32088	32088		78.06	34.288	1	6919900			24276	9114	17647	17773	23767	23767					0.025748789289536944
KEFKEEGRKNE	11	Unmodified	_KEFKEEGRKNE_					0	0	0		ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	MULTI-MSMS	A375_MHC_IP_R1	1	465.15826416015625	3	465.240524	1392.69974	-0.43341	-0.00020164	1.0248	0.00047677	0.59137	0.00027513	465.2411733816182	28.093	0.25098	28.093	27.937	28.188	0					10	4	3	0	0	0	0.68694	1	8600	8600		10.016	2.1702	1	2089400			24277	3973	17648	17774	23768	23768					0.01910035787000197
KEFKKVQFK	9	Unmodified	_KEFKKVQFK_					0	0	0			REV__CTTNBP2NL|p.S152F|1|0.28|ENSG00000143079|chr1:112455947-112455947|C/T|missense_variant	REV__CTTNBP2NL|p.S152F|1|0.28|ENSG00000143079|chr1:112455947-112455947|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	394.97308349609375	3	394.572886	1180.69683	0.03949	1.5582E-05	0.1022	4.0327E-05	0.14169	5.5908E-05	394.90724802351247	20.104	0.55766	20.104	19.827	20.384	0					20	10	2	0	0	0	0.22164	1	5099	5099		36.395	2.1733	1	3471600	+		24278	15936	17649	17775	23769	23769					0.1137085719078641
KEFLKEQAW	9	Unmodified	_KEFLKEQAW_					0	0	0		ENSG00000109436|ENST00000442267|TBC1D9	ENSG00000109436|ENST00000442267|TBC1D9	ENSG00000109436|ENST00000442267|TBC1D9	MULTI-SECPEP	A375_MHC_IP_R1	1	590.2135009765625	2	589.813856	1177.61316	0.19396	0.0001144	-0.43312	-0.00025546	-0.23916	-0.00014106	589.8135742627343	45.024	0.55614	45.024	44.878	45.434	0					14	10	2	0	0	0	0.5212	1	15752	15752		26.268	0	1	3574100			24279	2868	17650	17776	23770	23770					0.031457010230724336
KEFLKEQAW	9	Unmodified	_KEFLKEQAW_					0	0	0		ENSG00000109436|ENST00000442267|TBC1D9	ENSG00000109436|ENST00000442267|TBC1D9	ENSG00000109436|ENST00000442267|TBC1D9	MULTI-SECPEP	A375_MHC_IP_R2	2	590.213134765625	2	589.813856	1177.61316	-0.46967	-0.00027702	-0.19642	-0.00011585	-0.66608	-0.00039287	589.8135962951304	44.217	0.50645	44.986	44.732	45.239	0.7691					20	9	3	0	0	0	0.077986	1	16513	16513		73.196	33.247	1	3597700			24280	2868	17650	17776	23771	23771					0.031457010230724336
KEFLKPEKF	9	Unmodified	_KEFLKPEKF_					0	0	0		nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	MULTI-SECPEP	A375_MHC_IP_R1	1	389.9595642089844	3	389.225375	1164.6543	0.073182	2.8484E-05	0.11304	4.3998E-05	0.18622	7.2483E-05	389.22536272619504	31.162	0.86102	31.162	30.857	31.718	0					45	16	4	0	0	0	0.0069175	1	9923	9923		150.06	80.727	1	43190000			24281	1866	17651	17777	23772	23772					0.0785546206257095
KEFLKPEKF	9	Unmodified	_KEFLKPEKF_					0	0	0		nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	MULTI-SECPEP	A375_MHC_IP_R1	1	583.734130859375	2	583.334424	1164.6543	-0.3512	-0.00020487	-0.066533	-3.8811E-05	-0.41773	-0.00024368	583.3343265045876	31.133	0.65849	31.133	30.806	31.465	0					29	12	4	0	0	0	0.010102	1	9940	9940		165.58	82.156	1	11825000			24282	1866	17651	17777	23773	23773					0.0785546206257095
KEFLKPEKF	9	Unmodified	_KEFLKPEKF_					0	0	0		nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	MULTI-MSMS	A375_MHC_IP_R2	2	389.62542724609375	3	389.225375	1164.6543	-0.20893	-8.1319E-05	0.38933	0.00015154	0.1804	7.0216E-05	389.2254916670502	30.269	0.90902	30.988	30.608	31.517	0.71857					44	17	4	0	0	0	0.001399	1	10595	10595		150.06	62.807	1	52839000			24283	1866	17651	17777	23774	23774					0.0785546206257095
KEFLKPEKF	9	Unmodified	_KEFLKPEKF_					0	0	0		nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	MULTI-SECPEP	A375_MHC_IP_R2	2	583.7340698242188	2	583.334424	1164.6543	-0.46852	-0.00027331	0.20732	0.00012094	-0.2612	-0.00015237	583.3344276363879	30.264	0.50731	30.982	30.759	31.266	0.71857					22	9	3	0	0	0	0.011097	1	10613	10613		142.92	77.445	1	11380000			24284	1866	17651	17777	23775	23775					0.0785546206257095
KEFPDDVVTF	10	Unmodified	_KEFPDDVVTF_					0	0	0		ENSG00000075223|ENST00000265361|SEMA3C	ENSG00000075223|ENST00000265361|SEMA3C	ENSG00000075223|ENST00000265361|SEMA3C	MULTI-MSMS	A375_MHC_IP_R1	1	599.3345336914062	2	598.795329	1195.5761	-0.33085	-0.00019811	0.29534	0.00017685	-0.035517	-2.1267E-05	598.7953802283412	88.273	1.8316	88.273	87.289	89.12	0					63	35	2	0	0	0	0.011121	1	32330	32330		110.79	63.044	1	7430200			24285	1603	17652	17778	23776	23776					-0.013860153133464337
KEFPDDVVTF	10	Unmodified	_KEFPDDVVTF_					0	0	0		ENSG00000075223|ENST00000265361|SEMA3C	ENSG00000075223|ENST00000265361|SEMA3C	ENSG00000075223|ENST00000265361|SEMA3C	MULTI-SECPEP	A375_MHC_IP_R2	2	598.8819580078125	2	598.795329	1195.5761	-0.44624	-0.0002672	0.32036	0.00019183	-0.12587	-7.5372E-05	598.795520176551	87.588	1.8232	88.32	87.305	89.128	0.7318					58	35	2	0	0	0	0.22519	1	33199	33199		59.368	21.193	1	7996800			24286	1603	17652	17778	23777	23777					-0.013860153133464337
KEFPEKQEL	9	Unmodified	_KEFPEKQEL_					0	0	0		ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant;ENSG00000160445|ENST00000291900|ZER1	ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant	ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	383.60443115234375	3	383.20464	1146.59209	0.053408	2.0466E-05	-0.69194	-0.00026515	-0.63853	-0.00024469	383.20460386731366	25.903	1.0139	25.903	25.46	26.474	0					74	19	6	0	0	0	0.017727	2	7571	7571;7847		70.929	36.707	1	20305000			24287	6421	17653	17779	23778;23779	23778					0.0246569092360005
KEFPEKQEL	9	Unmodified	_KEFPEKQEL_					0	0	0		ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant;ENSG00000160445|ENST00000291900|ZER1	ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant	ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	574.7027587890625	2	574.303321	1146.59209	-0.46856	-0.00026909	0.16171	9.2869E-05	-0.30685	-0.00017623	574.3033322355603	25.934	0.91121	25.934	25.613	26.524	0					56	17	4	0	0	0	0.011204	1	7567	7567		135.86	135.86	1	40584000			24288	6421	17653	17779	23780	23780					0.0246569092360005
KEFPEKQEL	9	Unmodified	_KEFPEKQEL_					0	0	0		ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant;ENSG00000160445|ENST00000291900|ZER1	ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant	ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	574.7031860351562	2	574.303321	1146.59209	-0.6581	-0.00037795	-0.025697	-1.4758E-05	-0.6838	-0.00039271	574.3032240832506	25.403	1.1209	26.046	25.465	26.585	0.64368					64	21	5	0	0	0	0.010673	1	8605	8605		162.31	162.31	1	41044000			24289	6421	17653	17779	23781	23781					0.0246569092360005
KEFPGFLEN	9	Unmodified	_KEFPGFLEN_					0	0	0		ENSG00000197747|ENST00000368811|S100A10	ENSG00000197747|ENST00000368811|S100A10	ENSG00000197747|ENST00000368811|S100A10	MULTI-MSMS	A375_MHC_IP_R1	1	540.677001953125	2	540.771657	1079.52876	-0.47057	-0.00025447	0.015042	8.1345E-06	-0.45553	-0.00024634	540.7715790855382	72.516	1.1151	72.516	71.765	72.88	0					36	21	2	0	0	0	0.026372	2	26218	26218;26423		78.06	32.321	1	3332800			24290	9191	17654	17780	23782;23783	23782					-0.007822497936558648
KEFPGFLEN	9	Unmodified	_KEFPGFLEN_					0	0	0		ENSG00000197747|ENST00000368811|S100A10	ENSG00000197747|ENST00000368811|S100A10	ENSG00000197747|ENST00000368811|S100A10	MULTI-MSMS	A375_MHC_IP_R2	2	540.6973266601562	2	540.771657	1079.52876	-1.1281	-0.00061006	0.10786	5.8326E-05	-1.0203	-0.00055173	540.7717954053654	71.589	1.0126	72.323	71.908	72.921	0.73421					42	19	3	0	0	0	0.12591	2	27228	27059;27228		46.022	11.09	1	3886800			24291	9191	17654	17780	23784;23785	23785					-0.007822497936558648
KEFPNDQVKKY	11	Unmodified	_KEFPNDQVKKY_					0	0	0		ENSG00000132879|ENST00000251547|FBXO44	ENSG00000132879|ENST00000251547|FBXO44	ENSG00000132879|ENST00000251547|FBXO44	MULTI-MSMS	A375_MHC_IP_R1	1	466.3134460449219	3	465.913748	1394.71942	-0.067741	-3.1561E-05	-0.4736	-0.00022066	-0.54134	-0.00025222	465.9135832260011	20.657	1.3226	20.657	20.283	21.606	0					41	25	2	0	0	0	0.7011	1	5276	5276		15.467	9.5984	1	2274900			24292	4460	17655	17781	23786	23786					0.037844117977329006
KEFPNDQVKKY	11	Unmodified	_KEFPNDQVKKY_					0	0	0		ENSG00000132879|ENST00000251547|FBXO44	ENSG00000132879|ENST00000251547|FBXO44	ENSG00000132879|ENST00000251547|FBXO44	MULTI-MSMS	A375_MHC_IP_R2	2	466.3128967285156	3	465.913748	1394.71942	-0.93894	-0.00043747	0.21795	0.00010154	-0.72099	-0.00033592	466.2482802216435	18.955	1.3645	19.559	19.483	20.848	0.60308					49	26	2	0	0	0	0.5997	3	5955	5955;6140;6189		23.34	16.306	1	3179900			24293	4460	17655	17781	23787;23788;23789	23787					0.037844117977329006
KEFPSILRF	9	Unmodified	_KEFPSILRF_					0	0	0		nc|ENSG00000172936|Q99836-2|MYD88;nc|ENSG00000172936|Q99836-5|MYD88;ENSG00000172936|ENST00000650905|MYD88;nc|ENSG00000172936|Q99836-6|MYD88;ENST00000481122.5_1_3:38180729-38182774:+|nuORF	nc|ENSG00000172936|Q99836-2|MYD88	nc|ENSG00000172936|Q99836-2|MYD88	MULTI-MSMS	A375_MHC_IP_R1	1	569.2269287109375	2	568.826766	1135.63898	-0.24464	-0.00013916	0.34611	0.00019688	0.10147	5.7719E-05	568.8269119637254	81.84	1.1665	81.84	81.353	82.52	0					54	22	4	0	0	0	0.0098437	1	29857	29857		135.86	83.595	1	39631000			24294	7748	17656	17782	23790	23790					0.07658595265388612
KEFPSILRF	9	Unmodified	_KEFPSILRF_					0	0	0		nc|ENSG00000172936|Q99836-2|MYD88;nc|ENSG00000172936|Q99836-5|MYD88;ENSG00000172936|ENST00000650905|MYD88;nc|ENSG00000172936|Q99836-6|MYD88;ENST00000481122.5_1_3:38180729-38182774:+|nuORF	nc|ENSG00000172936|Q99836-2|MYD88	nc|ENSG00000172936|Q99836-2|MYD88	MULTI-MSMS	A375_MHC_IP_R1	1	379.9537048339844	3	379.553603	1135.63898	0.42917	0.00016289	0.61348	0.00023285	1.0426	0.00039574	379.5536597016221	81.893	0.81017	81.893	81.506	82.316	0					63	15	6	0	0	0	0.0093155	1	29872	29872		104.48	41.616	1	22770000			24295	7748	17656	17782	23791	23791					0.07658595265388612
KEFPSILRF	9	Unmodified	_KEFPSILRF_					0	0	0		nc|ENSG00000172936|Q99836-2|MYD88;nc|ENSG00000172936|Q99836-5|MYD88;ENSG00000172936|ENST00000650905|MYD88;nc|ENSG00000172936|Q99836-6|MYD88;ENST00000481122.5_1_3:38180729-38182774:+|nuORF	nc|ENSG00000172936|Q99836-2|MYD88	nc|ENSG00000172936|Q99836-2|MYD88	MULTI-MSMS	A375_MHC_IP_R2	2	379.9534912109375	3	379.553603	1135.63898	-0.019818	-7.5218E-06	-0.22265	-8.4507E-05	-0.24247	-9.2029E-05	379.5534783641918	80.847	1.1175	81.592	81.265	82.383	0.74474					43	21	3	0	0	0	0.0111	1	30646	30646		94.909	32.04	1	21019000			24296	7748	17656	17782	23792	23792					0.07658595265388612
KEFPSILRF	9	Unmodified	_KEFPSILRF_					0	0	0		nc|ENSG00000172936|Q99836-2|MYD88;nc|ENSG00000172936|Q99836-5|MYD88;ENSG00000172936|ENST00000650905|MYD88;nc|ENSG00000172936|Q99836-6|MYD88;ENST00000481122.5_1_3:38180729-38182774:+|nuORF	nc|ENSG00000172936|Q99836-2|MYD88	nc|ENSG00000172936|Q99836-2|MYD88	MULTI-SECPEP	A375_MHC_IP_R2	2	569.2267456054688	2	568.826766	1135.63898	-0.42267	-0.00024043	-0.39837	-0.0002266	-0.82104	-0.00046703	568.8264694372509	80.82	1.0665	81.565	81.265	82.332	0.74474					49	20	4	0	0	0	0.023846	1	30630	30630		114.5	70.638	1	30717000			24297	7748	17656	17782	23793	23793					0.07658595265388612
KEFRLRIGE	9	Unmodified	_KEFRLRIGE_					0	0	0			REV__ENSG00000198933|ENST00000578982|TBKBP1	REV__ENSG00000198933|ENST00000578982|TBKBP1	MULTI-MSMS	A375_MHC_IP_R2	2	383.6044921875	3	383.224257	1146.65094	-0.56107	-0.00021502	0.50317	0.00019283	-0.057899	-2.2188E-05	383.55884062295974	25.699	0.25498	26.359	26.245	26.5	0.65992					7	4	2	0	0	0	0.65748	1	8606	8606		10.8	0	1	1321600	+		24298	22452	17657	17783	23794	23794					0.0834821200855913
KEFRPEDQP	9	Unmodified	_KEFRPEDQP_					0	0	0		ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	MULTI-MSMS	A375_MHC_IP_R1	1	573.682861328125	2	573.28292	1144.55129	-0.39181	-0.00022462	-0.2103	-0.00012056	-0.60211	-0.00034518	573.2827676600252	25.757	0.50669	25.757	25.46	25.966	0					16	9	2	0	0	0	0.14922	1	7596	7596		41.84	9.5341	1	2791700			24299	3976	17658	17784	23795	23795					-0.015206503960371265
KEFRPEDQP	9	Unmodified	_KEFRPEDQP_					0	0	0		ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	MULTI-MSMS	A375_MHC_IP_R2	2	573.6829833984375	2	573.28292	1144.55129	-0.67193	-0.00038521	0.061168	3.5067E-05	-0.61076	-0.00035014	573.2829874846532	25.172	0.56217	25.816	25.414	25.976	0.64368					17	10	2	0	0	0	0.14922	1	8393	8393		41.84	5.7126	1	3318700			24300	3976	17658	17784	23796	23796					-0.015206503960371265
KEFRPEDQP	9	Unmodified	_KEFRPEDQP_					0	0	0		ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	573.28292	1144.55129	-0.39181	-0.00022462	-0.2103	-0.00012056	-0.60211	-0.00034518	573.2827676600252	25.757	0.50669	25.757	25.46	25.966	0	-0.029729	-0.00014011	NaN	41.84	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2791700			24301	3976	17658	17784							-0.015206503960371265
KEFSDFMKW	9	Unmodified	_KEFSDFMKW_					0	0	0		ENSG00000138459|ENST00000492406|SLC35A5;SLC35A5|p.S98F|1|0.19|ENSG00000138459|chr3:112570603-112570603|C/T|missense_variant	ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	MULTI-SECPEP	A375_MHC_IP_R2	2	609.686279296875	2	609.286617	1216.55868	-0.51287	-0.00031249	-1.0026	-0.00061088	-1.5155	-0.00092337	609.2858349805653	81.879	0.50884	82.622	82.33	82.839	0.74294					16	9	2	0	0	0	0.67323	1	31129	31129		18.721	17.65	1	1633600			24302	4998	17659	17785	23797	23797					-0.04093634119976741
KEFSDFMKW	9	Unmodified	_KEFSDFMKW_					0	0	0		ENSG00000138459|ENST00000492406|SLC35A5;SLC35A5|p.S98F|1|0.19|ENSG00000138459|chr3:112570603-112570603|C/T|missense_variant	ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	MULTI-MATCH	A375_MHC_IP_R1	1		2	609.286617	1216.55868	-0.17134	-0.00010439	0.063244	3.8534E-05	-0.1081	-6.5861E-05	609.2864181866323	82.528	0.50775	82.528	82.265	82.772	0	-0.047156	0.00069005	NaN	18.721	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2009800			24303	4998	17659	17785							-0.04093634119976741
KEFSDLEKKF	10	Unmodified	_KEFSDLEKKF_					0	0	0		ENSG00000044459|ENST00000380647|CNTLN;nc|ENSG00000044459|Q9NXG0|CNTLN;nc|ENSG00000044459|Q9NXG0-3|CNTLN	ENSG00000044459|ENST00000380647|CNTLN	ENSG00000044459|ENST00000380647|CNTLN	MULTI-MSMS	A375_MHC_IP_R2	2	424.6275939941406	3	424.227444	1269.6605	-0.48528	-0.00020587	0.0057487	2.4388E-06	-0.47953	-0.00020343	424.227450024352	36.493	0.50823	37.264	37.056	37.564	0.7709					13	9	2	0	0	0	0.043136	1	13348	13348		77.867	54.852	1	2907300			24304	1186	17660	17786	23798	23798					0.03645935503413966
KEFSDLEKKF	10	Unmodified	_KEFSDLEKKF_					0	0	0		ENSG00000044459|ENST00000380647|CNTLN;nc|ENSG00000044459|Q9NXG0|CNTLN;nc|ENSG00000044459|Q9NXG0-3|CNTLN	ENSG00000044459|ENST00000380647|CNTLN	ENSG00000044459|ENST00000380647|CNTLN	MULTI-MATCH	A375_MHC_IP_R1	1		3	424.227444	1269.6605	0.09774	4.1464E-05	-1.2437	-0.00052761	-1.146	-0.00048614	424.22742911969306	37.398	0.30693	37.398	37.249	37.556	0	0.066759	-0.0011846	NaN	77.867	15	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2253500			24305	1186	17660	17786							0.03645935503413966
KEFSQTLQIQ	10	Unmodified	_KEFSQTLQIQ_					0	0	0			REV__nc|ENSG00000048991|Q15032-2|R3HDM1	REV__nc|ENSG00000048991|Q15032-2|R3HDM1	MULTI-SECPEP	A375_MHC_IP_R1	1	611.6902465820312	2	611.327328	1220.6401	-0.39318	-0.00024036	-0.92527	-0.00056564	-1.3184	-0.000806	611.326680499199	42.028	0.40631	42.028	41.777	42.183	0					15	7	3	0	0	0	0.66275	1	14532	14532		23.79	0	1	4592600	+		24306	16377	17661	17787	23799	23799					0.03860764843625475
KEFTGIDNLW	10	Unmodified	_KEFTGIDNLW_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	A375_MHC_IP_R2	2	612.7109985351562	2	611.808771	1221.60299	-0.71399	-0.00043682	1.1651	0.0007128	0.45108	0.00027598	611.8087901001354	97.161	1.0644	97.916	97.419	98.483	0.75587					30	16	3	0	0	0	0.56097	1	36880	36880		23.79	2.2528	1	4046200			24307	3055	17662	17788	23800	23800					0.001050932978387209
KEFVGKPTI	9	Unmodified	_KEFVGKPTI_					0	0	0		ENST00000443339.5_1_3:9475802-9506425:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;nc|ENSG00000168137|Q9C0A6-3|SETD5;ENSG00000168137|ENST00000402198|SETD5	ENST00000443339.5_1_3:9475802-9506425:+|nuORF	ENST00000443339.5_1_3:9475802-9506425:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	510.19964599609375	2	509.800217	1017.58588	-0.55569	-0.00028329	-0.042032	-2.1428E-05	-0.59772	-0.00030472	509.8001306331016	32.226	0.56165	32.226	31.973	32.535	0					26	10	4	0	0	0	0.40495	1	10367	10367		31.636	6.6448	1	22799000			24308	7269	17663	17789	23801	23801					0.07779217482732292
KEFVGKPTI	9	Unmodified	_KEFVGKPTI_					0	0	0		ENST00000443339.5_1_3:9475802-9506425:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;nc|ENSG00000168137|Q9C0A6-3|SETD5;ENSG00000168137|ENST00000402198|SETD5	ENST00000443339.5_1_3:9475802-9506425:+|nuORF	ENST00000443339.5_1_3:9475802-9506425:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	510.2000427246094	2	509.800217	1017.58588	-0.7748	-0.00039499	0.16505	8.4145E-05	-0.60975	-0.00031085	509.80026673455376	31.388	0.45961	32.106	31.923	32.383	0.71857					21	8	4	0	0	0	0.11751	1	11084	11084		66.683	66.683	1	22902000			24309	7269	17663	17789	23802	23802					0.07779217482732292
KEFYPVKEF	9	Unmodified	_KEFYPVKEF_					0	0	0		ENSG00000186160|ENST00000334194|CYP4Z1;CYP4Z1|p.H57Y|1|0.73|ENSG00000186160|chr1:47067659-47067659|C/T|missense_variant	ENSG00000186160|ENST00000334194|CYP4Z1	ENSG00000186160|ENST00000334194|CYP4Z1	MULTI-SECPEP	A375_MHC_IP_R1	1	396.5840148925781	3	396.209613	1185.60701	-0.13517	-5.3556E-05	3.3454	0.0013255	3.2102	0.0012719	396.21046776770464	34.431	0.50379	34.431	34.154	34.657	0					11	7	2	0	0	0	0.74412	1	11384	11384		6.6304	0	1	1544600			24310	8724	17664	17790	23803	23803					0.02163182791559848
KEGDIVTLI	9	Unmodified	_KEGDIVTLI_					0	0	0		ENSG00000147010|ENST00000397821|SH3KBP1;nc|ENSG00000147010|Q96B97-2|SH3KBP1;nc|ENSG00000147010|Q96B97-3|SH3KBP1	ENSG00000147010|ENST00000397821|SH3KBP1	ENSG00000147010|ENST00000397821|SH3KBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	494.6891174316406	2	494.289682	986.564812	-0.53235	-0.00026314	0.061237	3.0269E-05	-0.47112	-0.00023287	494.2896762238859	82.076	1.0157	82.818	82.431	83.447	0.74293					36	19	3	0	0	0	0.20451	1	31140	31140		41.956	0	1	12271000			24311	5649	17665	17791	23804	23804					0.07099207383214434
KEGEFVAQF	9	Unmodified	_KEGEFVAQF_					0	0	0		ENSG00000170515|ENST00000303305|PA2G4;nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENST00000414718.1_1_20:12361512-12361782:+|nuORF	ENSG00000170515|ENST00000303305|PA2G4	ENSG00000170515|ENST00000303305|PA2G4	MULTI-MSMS	A375_MHC_IP_R1	1	527.7052612304688	2	527.763832	1053.51311	-0.44796	-0.00023642	0.5032	0.00026557	0.055234	2.915E-05	527.7637162504907	62.141	1.6361	62.141	61.382	63.018	0					107	31	6	0	0	0	0.012843	1	22391	22391		92.653	32.579	1	143090000			24312	7515	17666	17792	23805	23805					-0.011505363107289668
KEGEFVAQF	9	Unmodified	_KEGEFVAQF_					0	0	0		ENSG00000170515|ENST00000303305|PA2G4;nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENST00000414718.1_1_20:12361512-12361782:+|nuORF	ENSG00000170515|ENST00000303305|PA2G4	ENSG00000170515|ENST00000303305|PA2G4	MULTI-SECPEP	A375_MHC_IP_R2	2	527.70556640625	2	527.763832	1053.51311	-0.81639	-0.00043086	0.021356	1.1271E-05	-0.79503	-0.00041959	527.763868064745	61.299	1.5133	62.044	61.263	62.776	0.74503					82	29	6	0	0	0	0.03109	1	23195	23195		92.653	40.385	1	155110000			24313	7515	17666	17792	23806	23806					-0.011505363107289668
KEGIPPDQQRL	11	Unmodified	_KEGIPPDQQRL_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000143947|ENST00000272317|RPS27A;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	A375_MHC_IP_R1	1	427.9696960449219	3	427.570093	1279.68845	-0.35535	-0.00015194	-0.11351	-4.8534E-05	-0.46886	-0.00020047	427.57004446499104	26.193	2.7327	26.193	25.053	27.786	0					80	53	2	0	0	0	0.17108	4	7581	7513;7581;7665;7966		57.885	45.845	1	4135300			24314	9678	17667	17793	23807;23808;23809;23810	23808					0.0597925848351224
KEGIPPDQQRL	11	Unmodified	_KEGIPPDQQRL_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000143947|ENST00000272317|RPS27A;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	A375_MHC_IP_R2	2	427.9698181152344	3	427.570093	1279.68845	-0.59018	-0.00025234	-0.072637	-3.1057E-05	-0.66282	-0.0002834	427.5700968101843	25.454	3.1565	26.097	24.958	28.114	0.64368					77	61	2	0	0	0	0.33293	3	8437	8437;8449;9212		44.207	30.661	1	3232400			24315	9678	17667	17793	23811;23812;23813	23811					0.0597925848351224
KEGIVFKSL	9	Unmodified	_KEGIVFKSL_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-SECPEP	A375_MHC_IP_R1	1	511.207763671875	2	510.808042	1019.60153	-0.26478	-0.00013525	-0.24312	-0.00012419	-0.5079	-0.00025944	510.8078533097649	47.895	0.5549	47.895	47.567	48.122	0					26	10	3	0	0	0	0.011465	1	16832	16832		114.5	38.736	1	15324000			24316	2388	17668	17794	23814	23814					0.09251503999769284
KEGIVFKSL	9	Unmodified	_KEGIVFKSL_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-SECPEP	A375_MHC_IP_R2	2	511.20770263671875	2	510.808042	1019.60153	-0.55519	-0.0002836	0.13073	6.6777E-05	-0.42447	-0.00021682	510.80804554058255	46.854	0.5588	47.616	47.412	47.97	0.76128					22	10	3	0	0	0	0.027055	1	17550	17550		91.085	31.011	1	14411000			24317	2388	17668	17794	23815	23815					0.09251503999769284
KEGKIEGIVW	10	Unmodified	_KEGKIEGIVW_					0	0	0		ENST00000552121.5_1_12:88429328-88442196:+|nuORF;ENST00000547468.1_1_12:88436564-88442196:+|nuORF;nc|ENSG00000133641|Q8N999-3|RLIG1;ENSG00000133641|ENST00000356891|C12orf29;ENST00000550333.5_1_12:88429286-88442196:+|nuORF;ENST00000548511.5_1_12:88439351-88442196:+|nuORF	ENST00000552121.5_1_12:88429328-88442196:+|nuORF	ENST00000552121.5_1_12:88429328-88442196:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	387.288818359375	3	386.888763	1157.64446	0.25637	9.9189E-05	0.29346	0.00011353	0.54983	0.00021272	386.88868106966413	57.446	0.76341	57.446	57.059	57.822	0					36	14	3	0	0	0	0.47255	1	20583	20583		20.871	11.107	1	7200200			24318	4520	17669	17795	23816	23816					0.07194274057201255
KEGKIEGIVW	10	Unmodified	_KEGKIEGIVW_					0	0	0		ENST00000552121.5_1_12:88429328-88442196:+|nuORF;ENST00000547468.1_1_12:88436564-88442196:+|nuORF;nc|ENSG00000133641|Q8N999-3|RLIG1;ENSG00000133641|ENST00000356891|C12orf29;ENST00000550333.5_1_12:88429286-88442196:+|nuORF;ENST00000548511.5_1_12:88439351-88442196:+|nuORF	ENST00000552121.5_1_12:88429328-88442196:+|nuORF	ENST00000552121.5_1_12:88429328-88442196:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	580.7321166992188	2	579.829506	1157.64446	-0.17488	-0.0001014	0.98357	0.0005703	0.80869	0.0004689	579.829544932924	57.359	0.66102	57.359	57.007	57.669	0					36	12	4	0	0	0	0.45806	1	20594	20594		30.703	6.0296	1	5091000			24319	4520	17669	17795	23817	23817					0.07194274057201255
KEGKIEGIVW	10	Unmodified	_KEGKIEGIVW_					0	0	0		ENST00000552121.5_1_12:88429328-88442196:+|nuORF;ENST00000547468.1_1_12:88436564-88442196:+|nuORF;nc|ENSG00000133641|Q8N999-3|RLIG1;ENSG00000133641|ENST00000356891|C12orf29;ENST00000550333.5_1_12:88429286-88442196:+|nuORF;ENST00000548511.5_1_12:88439351-88442196:+|nuORF	ENST00000552121.5_1_12:88429328-88442196:+|nuORF	ENST00000552121.5_1_12:88429328-88442196:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	387.28863525390625	3	386.888763	1157.64446	-0.48659	-0.00018826	0.69953	0.00027064	0.21294	8.2385E-05	386.8889293713304	56.506	0.76498	57.256	56.745	57.51	0.75014					30	14	3	0	0	0	0.36067	1	21327	21327		31.636	13.263	1	6843100			24320	4520	17669	17795	23818	23818					0.07194274057201255
KEGKIEGIVW	10	Unmodified	_KEGKIEGIVW_					0	0	0		ENST00000552121.5_1_12:88429328-88442196:+|nuORF;ENST00000547468.1_1_12:88436564-88442196:+|nuORF;nc|ENSG00000133641|Q8N999-3|RLIG1;ENSG00000133641|ENST00000356891|C12orf29;ENST00000550333.5_1_12:88429286-88442196:+|nuORF;ENST00000548511.5_1_12:88439351-88442196:+|nuORF	ENST00000552121.5_1_12:88429328-88442196:+|nuORF	ENST00000552121.5_1_12:88429328-88442196:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	580.7315673828125	2	579.829506	1157.64446	-0.60684	-0.00035186	0.82429	0.00047795	0.21745	0.00012609	579.8293419327283	56.384	0.81715	57.135	56.642	57.459	0.75014					34	15	3	0	0	0	0.29801	1	21345	21345		40.239	16.449	1	3353900			24321	4520	17669	17795	23819	23819					0.07194274057201255
KEGLDIYKKF	10	Unmodified	_KEGLDIYKKF_					0	0	0		nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF	nc|ENSG00000073921|Q13492-4|PICALM	nc|ENSG00000073921|Q13492-4|PICALM	MULTI-MSMS	A375_MHC_IP_R1	1	414.635986328125	3	414.236051	1239.68632	0.17454	7.2301E-05	-0.30721	-0.00012726	-0.13267	-5.4956E-05	414.2359922791866	41.036	1.8251	41.036	40.712	42.537	0					101	35	6	0	0	0	5.5783E-31	1	14087	14087		209.96	125.9	1	491130000			24322	1573	17670	17796	23820	23820					0.0760682974566862
KEGLDIYKKF	10	Unmodified	_KEGLDIYKKF_					0	0	0		nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF	nc|ENSG00000073921|Q13492-4|PICALM	nc|ENSG00000073921|Q13492-4|PICALM	MULTI-MSMS	A375_MHC_IP_R1	1	621.2503662109375	2	620.850438	1239.68632	-0.58126	-0.00036087	0.23136	0.00014364	-0.3499	-0.00021724	620.8505550111764	41.038	0.55516	41.038	40.813	41.368	0					32	10	4	0	0	0	1.5375E-22	1	14121	14121		240.78	158.87	1	28276000			24323	1573	17670	17796	23821	23821					0.0760682974566862
KEGLDIYKKF	10	Unmodified	_KEGLDIYKKF_					0	0	0		nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF	nc|ENSG00000073921|Q13492-4|PICALM	nc|ENSG00000073921|Q13492-4|PICALM	MULTI-MSMS	A375_MHC_IP_R2	2	414.6357116699219	3	414.236051	1239.68632	-0.053461	-2.2146E-05	-0.14123	-5.8501E-05	-0.19469	-8.0647E-05	414.23606812739297	40.18	1.7768	40.955	40.676	42.453	0.77451					112	34	6	0	0	0	1.8327E-22	1	14830	14830		209.96	133.89	1	506590000			24324	1573	17670	17796	23822	23822					0.0760682974566862
KEGLDIYKKF	10	Unmodified	_KEGLDIYKKF_					0	0	0		nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF	nc|ENSG00000073921|Q13492-4|PICALM	nc|ENSG00000073921|Q13492-4|PICALM	MULTI-MSMS	A375_MHC_IP_R2	2	621.2498168945312	2	620.850438	1239.68632	-0.77428	-0.00048071	0.15962	9.91E-05	-0.61466	-0.00038161	620.8504476509547	40.183	0.50708	40.957	40.727	41.234	0.77451					27	9	4	0	0	0	1.5375E-22	1	14853	14853		240.78	158.87	1	23943000			24325	1573	17670	17796	23823	23823					0.0760682974566862
KEGPPEEKEKE	11	Unmodified	_KEGPPEEKEKE_					0	0	0			REV__ENSG00000141385|ENST00000269143|AFG3L2	REV__ENSG00000141385|ENST00000269143|AFG3L2	MULTI-MSMS	A375_MHC_IP_R1	1	650.2239379882812	2	650.324982	1298.63541	-0.060836	-3.9563E-05	0.58797	0.00038237	0.52714	0.00034281	650.3253576851308	22.861	0.30091	22.861	22.673	22.974	0					8	5	2	0	0	0	0.72932	1	6185	6185		9.544	0.79857	1	1787900	+		24326	19259	17671	17797	23824	23824					-0.0019616408983438305
KEGPSPKVEY	10	Unmodified	_KEGPSPKVEY_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-SECPEP	A375_MHC_IP_R1	1	567.6950073242188	2	567.295496	1132.57644	-0.090844	-5.1535E-05	-0.45787	-0.00025975	-0.54871	-0.00031128	567.295142693907	21.58	0.55936	21.58	21.301	21.86	0					23	10	4	0	0	0	0.56884	1	5685	5685		55.249	23.98	1	8753900			24327	2067	17672	17798	23825	23825					0.015454044065336348
KEGPSPKVEY	10	Unmodified	_KEGPSPKVEY_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-SECPEP	A375_MHC_IP_R2	2	567.6945190429688	2	567.295496	1132.57644	-0.69639	-0.00039506	-0.15976	-9.0631E-05	-0.85615	-0.00048569	567.295422580192	20.084	0.60857	20.694	20.298	20.907	0.61029					21	11	3	0	0	0	0.78231	1	6177	6177		42.312	11.044	1	3946700			24328	2067	17672	17798	23826	23826					0.015454044065336348
KEGWVPASSLS	11	Unmodified	_KEGWVPASSLS_					0	0	0		nc|ENSG00000126217|O15068-6|MCF2L;nc|ENSG00000126217|O15068-8|MCF2L;nc|ENSG00000126217|O15068-10|MCF2L;ENSG00000126217|ENST00000535094|MCF2L;nc|ENSG00000126217|O15068|MCF2L;ENST00000397030.5_1_13:113750822-113750996:+|nuORF;ENST00000488765.1_1_13:113750837-113751170:+|nuORF;ENST00000469415.1_1_13:113748772-113751170:+|nuORF	nc|ENSG00000126217|O15068-6|MCF2L	nc|ENSG00000126217|O15068-6|MCF2L	MULTI-SECPEP	A375_MHC_IP_R2	2	387.29241943359375	3	387.536389	1159.58734	0.033694	1.3058E-05	1.4038	0.00054403	1.4375	0.00055709	387.87214574793035	46.78	0.20146	47.541	47.412	47.613	0.76128					6	3	2	0	0	0	0.98524	1	17496	17496		8.7518	2.1283	1	735170			24329	4030	17673	17799	23827	23827					0.013928067808137712
KEHDILSQL	9	Unmodified	_KEHDILSQL_					0	0	0		ENST00000489652.1_1_3:122255723-122264321:-|nuORF;nc|ENSG00000138496|Q8IXQ6|PARP9;nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9	ENST00000489652.1_1_3:122255723-122264321:-|nuORF;nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6|PARP9	MULTI-MSMS	A375_MHC_IP_R1	1	361.9328918457031	3	361.532868	1081.57677	0.1252	4.5263E-05	-0.33605	-0.00012149	-0.21085	-7.623E-05	361.5327690468954	52.393	0.45625	52.393	52.186	52.643	0					12	8	2	0	0	0	0.46357	1	18657	18657		21.59	3.2171	1	1719200			24330	14635;12637	17674	17800	23828	23828					0.03924824126374915
KEHDQLIEKRL	11	Unmodified	_KEHDQLIEKRL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	A375_MHC_IP_R1	1	353.3529968261719	4	352.95313	1407.78341	0.20959	7.3975E-05	-0.73229	-0.00025847	-0.52271	-0.00018449	352.9529311713905	21.821	0.55904	21.821	21.403	21.962	0					25	10	4	0	0	0	0.38304	1	5776	5776		40.317	22.745	1	3179100			24331	1768	17675	17801	23829	23829					0.09583191954698123
KEHDQLIEKRL	11	Unmodified	_KEHDQLIEKRL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	A375_MHC_IP_R1	1	470.6684265136719	3	470.268414	1407.78341	-0.072867	-3.4267E-05	-0.18029	-8.4784E-05	-0.25316	-0.00011905	470.2683830495526	21.792	0.45705	21.792	21.505	21.962	0					18	8	3	0	0	0	0.41418	1	5779	5779		37.87	27.853	1	2254200			24332	1768	17675	17801	23830	23830					0.09583191954698123
KEHDQLIEKRL	11	Unmodified	_KEHDQLIEKRL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	A375_MHC_IP_R2	2	353.3528137207031	4	352.95313	1407.78341	-0.54437	-0.00019214	-0.10001	-3.5298E-05	-0.64438	-0.00022744	353.203908614531	20.052	0.55794	20.663	20.349	20.907	0.61029					24	10	3	0	0	0	0.69246	1	6183	6183		16.137	9.4773	1	3749200			24333	1768	17675	17801	23831	23831					0.09583191954698123
KEHDQLIEKRL	11	Unmodified	_KEHDQLIEKRL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	A375_MHC_IP_R2	2	470.6681823730469	3	470.268414	1407.78341	-0.91527	-0.00043042	-0.33111	-0.00015571	-1.2464	-0.00058613	470.2683643687199	19.983	0.35317	20.594	20.399	20.752	0.61029					11	6	2	0	0	0	0.49465	1	6185	6185		31.544	20.479	1	1977100			24334	1768	17675	17801	23832	23832					0.09583191954698123
KEHDQLIEKRL	11	Unmodified	_KEHDQLIEKRL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MATCH	A375_MHC_IP_R1	1		3	470.268414	1407.78341	-0.21459	-0.00010092	-0.29553	-0.00013898	-0.51012	-0.00023989	470.2683158715145	20.747	0.30865	20.747	20.587	20.895	0	0.076692	2.336E-05	NaN	31.544	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1537200			24335	1768	17675	17801							0.09583191954698123
KEHEDIFLF	9	Unmodified	_KEHEDIFLF_					0	0	0		nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1	nc|ENSG00000198862|O94822-3|LTN1	nc|ENSG00000198862|O94822-3|LTN1	MULTI-MSMS	A375_MHC_IP_R2	2	393.6015625	3	393.201118	1176.58152	-0.23345	-9.1792E-05	0.51604	0.00020291	0.28259	0.00011112	393.20121440621915	82.041	0.56044	82.784	82.482	83.042	0.74293					15	10	2	0	0	0	0.44024	1	31185	31185		16.566	9.4642	1	1835300			24336	9354	17676	17802	23833	23833					0.00029708269130424014
KEHPEKGVYV	10	Unmodified	_KEHPEKGVYV_					0	0	0		ENSG00000117245|ENST00000400463|KIF17;nc|ENSG00000117245|Q9P2E2|KIF17	ENSG00000117245|ENST00000400463|KIF17	ENSG00000117245|ENST00000400463|KIF17	MULTI-SECPEP	A375_MHC_IP_R2	2	396.2762451171875	3	395.880267	1184.61897	-0.39199	-0.00015518	-1.0827	-0.00042861	-1.4747	-0.00058379	396.5473488496568	18.918	0.4969	19.521	19.438	19.935	0.60308					22	10	4	0	0	0	0.86608	1	5864	5864		22.775	6.2091	1	35437000			24337	3467	17677	17803	23834	23834					0.034047995347464166
KEHQEARRKR	10	Unmodified	_KEHQEARRKR_					0	0	0		nc|ENSG00000171004|Q96MM7-3|HS6ST2;ENSG00000171004|ENST00000370833|HS6ST2;nc|ENSG00000171004|Q96MM7-2|HS6ST2;nc|ENSG00000171004|Q96MM7|HS6ST2	nc|ENSG00000171004|Q96MM7-3|HS6ST2	nc|ENSG00000171004|Q96MM7-3|HS6ST2	MULTI-MSMS	A375_MHC_IP_R2	2	669.7794799804688	2	669.379083	1336.74361	-0.63993	-0.00042836	0.50437	0.00033762	-0.13556	-9.0743E-05	669.3791240916104	135.47	0.86987	135.6	135.25	136.12	0.13899					29	16	2	0	0	0	0.72416	1	53242	53242		1.4819	0.15237	1	2233700			24338	7566	17678	17804	23835	23835					0.08871109794608856
KEHRLKEVM	9	Unmodified	_KEHRLKEVM_					0	0	0		nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2	nc|ENSG00000107331|Q9BZC7|ABCA2	nc|ENSG00000107331|Q9BZC7|ABCA2	MSMS	A375_MHC_IP_R1	1	390.5899963378906	3	390.553497	1168.63866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.991	1	20.991	20.491	21.491	0								0	0	0	0.15486	1	5460	5460		6.1918	1.4759	1				24339	2735	17679	17805	23836	23836					0.06108852273860066
KEIAEAYLGY	10	Unmodified	_KEIAEAYLGY_					0	0	0		ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A	ENSG00000204388|ENST00000375650|HSPA1B	ENSG00000204388|ENST00000375650|HSPA1B	MULTI-SECPEP	A375_MHC_IP_R1	1	579.1978149414062	2	578.797872	1155.58119	-0.31637	-0.00018311	0.48132	0.00027859	0.16495	9.5474E-05	578.7982391935493	65.543	1.168	65.543	65.005	66.173	0					55	22	4	0	0	0	0.22519	1	23711	23711		67.838	29.663	1	18475000			24340	9437	17680	17806	23837	23837					0.009622885492717614
KEIAEAYLGY	10	Unmodified	_KEIAEAYLGY_					0	0	0		ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A	ENSG00000204388|ENST00000375650|HSPA1B	ENSG00000204388|ENST00000375650|HSPA1B	MULTI-MSMS	A375_MHC_IP_R2	2	578.72900390625	2	578.797872	1155.58119	-0.23922	-0.00013846	0.36361	0.00021046	0.12439	7.1994E-05	578.7979839603469	64.843	1.6265	65.581	64.848	66.475	0.73811					66	31	4	0	0	0	0.41205	1	24661	24661		33.445	7.1768	1	18498000			24341	9437	17680	17806	23838	23838					0.009622885492717614
KEIAELKKQL	10	Unmodified	_KEIAELKKQL_					0	0	0		ENST00000490523.1_1_7:6064306-6068335:-|nuORF;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1;ENSG00000086232|ENST00000199389|EIF2AK1	ENST00000490523.1_1_7:6064306-6068335:-|nuORF	ENST00000490523.1_1_7:6064306-6068335:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	400.9250183105469	3	400.583451	1198.72852	-0.33387	-0.00013374	-0.51666	-0.00020697	-0.85053	-0.00034071	400.5834901239315	25.44	0.45897	25.44	25.306	25.765	0					11	8	2	0	0	0	0.71693	1	7394	7394		4.7159	0	1	1875100			24342	1833	17681	17807	23839	23839					0.13710805154096306
KEIDEIHSKY	10	Unmodified	_KEIDEIHSKY_					0	0	0		ENSG00000070950|ENST00000264926|RAD18	ENSG00000070950|ENST00000264926|RAD18	ENSG00000070950|ENST00000264926|RAD18	MULTI-SECPEP	A375_MHC_IP_R1	1	421.61895751953125	3	421.218949	1260.63502	0.16801	7.0769E-05	0.29865	0.0001258	0.46666	0.00019656	421.2188015264884	20.616	0.40777	20.616	20.334	20.742	0					20	7	4	0	0	0	0.075591	1	5319	5319		75.941	36.728	1	3661300			24343	1504	17682	17808	23840	23840					0.015124609810072798
KEIDEIHSKY	10	Unmodified	_KEIDEIHSKY_					0	0	0		ENSG00000070950|ENST00000264926|RAD18	ENSG00000070950|ENST00000264926|RAD18	ENSG00000070950|ENST00000264926|RAD18	MULTI-SECPEP	A375_MHC_IP_R2	2	421.6188659667969	3	421.218949	1260.63502	-0.39446	-0.00016615	0.36339	0.00015307	-0.031072	-1.3088E-05	421.21903544759147	19.416	0.45734	20.019	19.783	20.241	0.60308					18	8	3	0	0	0	0.91537	1	5980	5980		19.615	14.213	1	1840000			24344	1504	17682	17808	23841	23841					0.015124609810072798
KEIDKEEHLY	10	Unmodified	_KEIDKEEHLY_					0	0	0		ENST00000470594.5_1_X:51805328-51809606:-|nuORF;nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;ENST00000479281.5_1_X:51931784-51932886:+|nuORF;nc|ENSG00000187243|Q96JG8-4|MAGED4;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51640434-51640983:+|nuORF	ENST00000470594.5_1_X:51805328-51809606:-|nuORF;ENSG00000179222|ENST00000326587|MAGED1;ENST00000494718.5_1_X:51640434-51640983:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	A375_MHC_IP_R1	1	435.2819519042969	3	435.22247	1302.64558	0.14358	6.249E-05	-0.44425	-0.00019335	-0.30066	-0.00013086	435.2221909738724	21.886	0.3062	21.886	21.706	22.013	0					11	5	3	0	0	0	0.027029	3	5798	5798;5821;5835		82.445	53.164	1	4719900			24345	8215;12693;6095	17683	17809	23842;23843;23844	23842					0.006364436354488134
KEIDKEEHLY	10	Unmodified	_KEIDKEEHLY_					0	0	0		ENST00000470594.5_1_X:51805328-51809606:-|nuORF;nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;ENST00000479281.5_1_X:51931784-51932886:+|nuORF;nc|ENSG00000187243|Q96JG8-4|MAGED4;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51640434-51640983:+|nuORF	ENST00000470594.5_1_X:51805328-51809606:-|nuORF;ENSG00000179222|ENST00000326587|MAGED1;ENST00000494718.5_1_X:51640434-51640983:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	A375_MHC_IP_R1	1	435.6224670410156	3	435.22247	1302.64558	0.063067	2.7448E-05	0.2211	9.6228E-05	0.28417	0.00012368	435.22246805314785	22.892	0.60492	22.892	22.469	23.074	0					24	11	3	0	0	0	0.0075204	2	6195	6195;6203		105.35	60.4	1	4955100			24346	8215;12693;6095	17683	17809	23845;23846	23845					0.006364436354488134
KEIDKEEHLY	10	Unmodified	_KEIDKEEHLY_					0	0	0		ENST00000470594.5_1_X:51805328-51809606:-|nuORF;nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;ENST00000479281.5_1_X:51931784-51932886:+|nuORF;nc|ENSG00000187243|Q96JG8-4|MAGED4;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51640434-51640983:+|nuORF	ENST00000470594.5_1_X:51805328-51809606:-|nuORF;ENSG00000179222|ENST00000326587|MAGED1;ENST00000494718.5_1_X:51640434-51640983:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	A375_MHC_IP_R2	2	435.6220397949219	3	435.22247	1302.64558	-0.60069	-0.00026143	0.17908	7.7941E-05	-0.4216	-0.00018349	435.2224898643857	20.558	0.91456	21.169	20.752	21.666	0.61029					38	17	3	0	0	0	0.069075	2	6365	6352;6365		70.496	46.531	1	3776100			24347	8215;12693;6095	17683	17809	23847;23848	23848					0.006364436354488134
KEIDKNDHLY	10	Unmodified	_KEIDKNDHLY_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	A375_MHC_IP_R1	1	425.95074462890625	3	425.550698	1273.63027	-0.20722	-8.8184E-05	0.20117	8.5607E-05	-0.0060551	-2.5768E-06	425.55085149462707	19.658	0.66159	19.658	19.318	19.98	0					28	12	4	0	0	0	0.23565	1	4953	4953		45.603	25.188	1	6289600			24348	2373	17684	17810	23849	23849					0.004395768382437382
KEIDLESIF	9	Unmodified	_KEIDLESIF_					0	0	0		nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A;ENSG00000068796|ENST00000407818|KIF2A;ENST00000504883.1_1_5:61602296-61648542:+|nuORF	nc|ENSG00000068796|O00139-2|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	MULTI-SECPEP	A375_MHC_IP_R2	2	547.691650390625	2	547.292422	1092.57029	-0.82935	-0.0004539	0.037392	2.0464E-05	-0.79196	-0.00043343	547.2923673991108	107.62	0.81615	108.37	107.95	108.76	0.75436					47	15	4	0	0	0	0.05217	1	40606	40606		70.332	0	1	12841000			24349	1467	17685	17811	23850	23850					0.027708861749943026
KEIDMLLKEY	10	Oxidation (M)	_KEIDM(Oxidation (M))LLKEY_		KEIDM(1)LLKEY		KEIDM(89)LLKEY	0	0	1		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-MSMS	A375_MHC_IP_R1	1	433.963134765625	3	433.228456	1296.66354	-0.1767	-7.6551E-05	0.00061684	2.6723E-07	-0.17608	-7.6283E-05	433.2284347514026	60.535	0.66113	60.535	60.21	60.871	0					32	12	4	0	0	0	0.0156	2	21780	21780;21834		88.576	31.372	1	9005600			24350	5850	17686	17812	23851;23852	23851		314			0.027074425659520784
KEIDMLLKEY	10	Oxidation (M)	_KEIDM(Oxidation (M))LLKEY_		KEIDM(1)LLKEY		KEIDM(76)LLKEY	0	0	1		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-MSMS	A375_MHC_IP_R1	1	650.2404174804688	2	649.339046	1296.66354	-0.3514	-0.00022818	-0.11975	-7.7758E-05	-0.47115	-0.00030593	649.3389965849386	60.54	0.55963	60.54	60.312	60.871	0					26	10	3	0	0	0	0.048243	1	21784	21784		76.416	30.394	1	8929800			24351	5850	17686	17812	23853	23853		314			0.027074425659520784
KEIDMLLKEY	10	Oxidation (M)	_KEIDM(Oxidation (M))LLKEY_		KEIDM(1)LLKEY		KEIDM(70)LLKEY	0	0	1		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-MSMS	A375_MHC_IP_R1	1	433.6283874511719	3	433.228456	1296.66354	-0.18154	-7.8647E-05	-0.080822	-3.5014E-05	-0.26236	-0.00011366	433.2283913768075	61.196	2.0431	61.196	60.871	62.914	0					63	39	3	0	0	0	0.06969	1	22020	22020		70.321	14.854	1	8600700			24352	5850	17686	17812	23854	23854		314			0.027074425659520784
KEIDMLLKEY	10	Oxidation (M)	_KEIDM(Oxidation (M))LLKEY_		KEIDM(1)LLKEY		KEIDM(84)LLKEY	0	0	1		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-MSMS	A375_MHC_IP_R1	1	649.739013671875	2	649.339046	1296.66354	-0.34581	-0.00022455	-0.19982	-0.00012975	-0.54564	-0.0003543	649.3389646512659	61.162	2.1456	61.162	60.821	62.966	0					90	41	4	0	0	0	0.022052	2	22300	22300;22549		84.06	26.953	1	7482600			24353	5850	17686	17812	23855;23856	23855		314			0.027074425659520784
KEIDMLLKEY	10	Oxidation (M)	_KEIDM(Oxidation (M))LLKEY_		KEIDM(1)LLKEY		KEIDM(92)LLKEY	0	0	1		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-MSMS	A375_MHC_IP_R1	1	649.7382202148438	2	649.339046	1296.66354	0.10478	6.8039E-05	-0.24934	-0.0001619	-0.14455	-9.3865E-05	649.3389044144244	69.246	0.50914	69.246	69.02	69.529	0					19	9	3	0	0	0	0.010122	1	25136	25136		92.409	35.302	1	3932600			24354	5850	17686	17812	23857	23857		314			0.027074425659520784
KEIDMLLKEY	10	Oxidation (M)	_KEIDM(Oxidation (M))LLKEY_		KEIDM(1)LLKEY		KEIDM(110)LLKEY	0	0	1		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-MSMS	A375_MHC_IP_R2	2	649.73828125	2	649.339046	1296.66354	-1.0738	-0.00069728	-0.36884	-0.0002395	-1.4427	-0.00093678	649.3383857579569	59.78	0.85715	60.527	59.946	60.804	0.74714					30	16	3	0	0	0	0.010716	1	22587	22587		110.18	45.253	1	10080000			24355	5850	17686	17812	23858	23858		314			0.027074425659520784
KEIDMLLKEY	10	Oxidation (M)	_KEIDM(Oxidation (M))LLKEY_		KEIDM(1)LLKEY		KEIDM(70)LLKEY	0	0	1		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-MSMS	A375_MHC_IP_R2	2	433.62835693359375	3	433.228456	1296.66354	-0.6138	-0.00026591	-0.10103	-4.377E-05	-0.71483	-0.00030968	433.22846615138405	59.78	0.65589	60.527	60.148	60.804	0.74714					36	12	4	0	0	0	0.06969	1	22591	22591		70.321	14.854	1	12024000			24356	5850	17686	17812	23859	23859		314			0.027074425659520784
KEIDMLLKEY	10	Oxidation (M)	_KEIDM(Oxidation (M))LLKEY_		KEIDM(1)LLKEY		KEIDM(63)LLKEY	0	0	1		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-MSMS	A375_MHC_IP_R2	2	433.6280517578125	3	433.228456	1296.66354	-0.55652	-0.0002411	-0.31255	-0.00013541	-0.86907	-0.00037651	433.2283276791034	60.338	0.86688	61.083	60.801	61.668	0.74503					40	16	4	0	0	0	0.10354	1	22825	22825		62.894	14.333	1	9670700			24357	5850	17686	17812	23860	23860		314			0.027074425659520784
KEIDMLLKEY	10	Oxidation (M)	_KEIDM(Oxidation (M))LLKEY_		KEIDM(1)LLKEY		KEIDM(65)LLKEY	0	0	1		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-SECPEP	A375_MHC_IP_R2	2	649.7388916015625	2	649.339046	1296.66354	-0.5954	-0.00038661	0.10021	6.5069E-05	-0.49519	-0.00032154	649.3391765943621	68.563	0.55569	69.298	69.07	69.626	0.73511					15	10	2	0	0	0	0.22006	1	25991	25991		64.692	22.379	1	2988400			24358	5850	17686	17812	23861	23861		314			0.027074425659520784
KEIDMLLKEY	10	Oxidation (M)	_KEIDM(Oxidation (M))LLKEY_		KEIDM(1)LLKEY		KEIDM(100)LLKEY	0	0	1		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-SECPEP	A375_MHC_IP_R2	2	649.7381591796875	2	649.339046	1296.66354	-1.0151	-0.00065912	0.16699	0.00010843	-0.84808	-0.00055069	649.3390986632492	60.296	0.86688	61.041	60.801	61.668	0.74503					33	16	3	0	0	0	0.027416	1	22846	22846		104.94	51.474	1	6562700			24359	5850	17686	17812	23862	23862		314			0.027074425659520784
KEIDMLLKEY	10	Oxidation (M)	_KEIDM(Oxidation (M))LLKEY_		KEIDM(1)LLKEY		KEIDM(76)LLKEY	0	0	1		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-SECPEP	A375_MHC_IP_R2	2	650.1199951171875	2	649.339046	1296.66354	-1.0146	-0.00065879	0.33831	0.00021968	-0.67624	-0.00043911	649.3391306843085	61.144	1.2108	61.889	61.515	62.726	0.74503					40	23	2	0	0	0	0.153	1	23243	23243		76.068	26.327	1	2632600			24360	5850	17686	17812	23863	23863		314			0.027074425659520784
KEIDMLLKEY	10	Unmodified	_KEIDMLLKEY_					0	0	0		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-SECPEP	A375_MHC_IP_R1	1	641.7413940429688	2	641.341589	1280.66863	-0.13396	-8.5914E-05	-0.36966	-0.00023708	-0.50362	-0.00032299	641.341415495405	69.25	0.8629	69.25	68.969	69.832	0					55	16	5	0	0	0	0.17241	1	25096	25096		101.54	19.628	1	38989000			24361	5850	17686	17813	23864	23864					0.039517464285609094
KEIDMLLKEY	10	Unmodified	_KEIDMLLKEY_					0	0	0		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-MSMS	A375_MHC_IP_R2	2	427.93988037109375	3	427.896818	1280.66863	-0.08477	-3.6273E-05	-0.13288	-5.686E-05	-0.21765	-9.3133E-05	427.89680412079315	68.536	0.86205	69.271	68.968	69.83	0.73511					45	16	4	0	0	0	0.094079	1	25919	25919		50.648	19.186	1	24322000			24362	5850	17686	17813	23865	23865					0.039517464285609094
KEIDMLLKEY	10	Unmodified	_KEIDMLLKEY_					0	0	0		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-MSMS	A375_MHC_IP_R2	2	641.7418212890625	2	641.341589	1280.66863	-0.62222	-0.00039906	0.026343	1.6895E-05	-0.59588	-0.00038216	641.3416228226598	68.563	0.86152	69.298	68.918	69.779	0.73511					54	16	5	0	0	0	2.8869E-05	2	25929	25929;26122		160.97	87.773	1	36520000			24363	5850	17686	17813	23866;23867	23866					0.039517464285609094
KEIEDLLRK	9	Unmodified	_KEIEDLLRK_					0	0	0		CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7;CHD8|p.K1300N|1|0.17|ENSG00000100888|chr14:21402119-21402119|C/A|missense_variant;ENST00000555962.5_1_14:21868424-21899982:-|nuORF;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8	ENSG00000100888|ENST00000646647|CHD8	MULTI-MSMS	A375_MHC_IP_R1	1	382.29595947265625	3	381.895917	1142.66592	0.047318	1.807E-05	-0.088737	-3.3888E-05	-0.04142	-1.5818E-05	381.89585130206797	29.022	0.4059	29.022	28.795	29.201	0					19	7	4	0	0	0	0.22164	1	9033	9033		36.395	4.7593	1	10002000			24364	2228;387	17687	17814	23868	23868					0.10029659085921594
KEIEFQKEL	9	Unmodified	_KEIEFQKEL_					0	0	0		nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	MULTI-SECPEP	A375_MHC_IP_R1	1	582.71875	2	582.318971	1162.62339	-0.34444	-0.00020058	-0.92486	-0.00053857	-1.2693	-0.00073914	582.3177997785511	39.973	0.86523	39.973	39.744	40.609	0					24	16	3	0	0	0	0.011151	1	13712	13712		128.58	45.15	1	6544700			24365	5032	17688	17815	23869	23869					0.04858263957657982
KEIEFQKEL	9	Unmodified	_KEIEFQKEL_					0	0	0		nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	MULTI-MSMS	A375_MHC_IP_R2	2	388.9482727050781	3	388.548406	1162.62339	-0.30855	-0.00011989	0.53305	0.00020712	0.2245	8.7229E-05	388.5484274339989	39.141	0.56143	39.915	39.658	40.219	0.77451					21	10	3	0	0	0	0.52905	1	14478	14478		17.863	3.645	1	3000800			24366	5032	17688	17815	23870	23870					0.04858263957657982
KEIEFQKEL	9	Unmodified	_KEIEFQKEL_					0	0	0		nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	MULTI-SECPEP	A375_MHC_IP_R2	2	582.71875	2	582.318971	1162.62339	-0.538	-0.00031329	-0.1181	-6.8773E-05	-0.6561	-0.00038206	582.3188834584139	39.122	0.40949	39.896	39.708	40.118	0.77451					16	7	3	0	0	0	0.011151	1	14457	14457		118.21	37.533	1	5332900			24367	5032	17688	17815	23871	23871					0.04858263957657982
KEIEQLQEKY	10	Unmodified	_KEIEQLQEKY_					0	0	0		ENSG00000167842|ENST00000611091|MIS12	ENSG00000167842|ENST00000611091|MIS12	ENSG00000167842|ENST00000611091|MIS12	MULTI-MSMS	A375_MHC_IP_R2	2	654.7449951171875	2	654.345717	1306.67688	-0.856	-0.00056012	-0.58251	-0.00038116	-1.4385	-0.00094128	654.345452700016	32.298	0.30493	33.035	32.857	33.162	0.73692					9	5	2	0	0	0	0.71763	1	11497	11497		7.609	7.609	1	3793900			24368	7227	17689	17816	23872	23872					0.03581016669545534
KEIEQLQEKY	10	Unmodified	_KEIEQLQEKY_					0	0	0		ENSG00000167842|ENST00000611091|MIS12	ENSG00000167842|ENST00000611091|MIS12	ENSG00000167842|ENST00000611091|MIS12	MULTI-MATCH	A375_MHC_IP_R1	1		2	654.345717	1306.67688	-0.57349	-0.00037526	-0.34646	-0.00022671	-0.91996	-0.00060197	654.3455055183624	33.014	0.25318	33.014	32.836	33.09	0	-0.010549	0.00019906	NaN	7.609	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2368200			24369	7227	17689	17816							0.03581016669545534
KEIEQLQEKY	10	Unmodified	_KEIEQLQEKY_					0	0	0		ENSG00000167842|ENST00000611091|MIS12	ENSG00000167842|ENST00000611091|MIS12	ENSG00000167842|ENST00000611091|MIS12	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	654.345717	1306.67688	-0.856	-0.00056012	-0.58251	-0.00038116	-1.4385	-0.00094128	654.345452700016	32.298	0.30493	33.035	32.857	33.162	0.73692	0.010549	-0.00010985	NaN	7.609	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3793900			24370	7227	17689	17816							0.03581016669545534
KEIFLRELI	9	Unmodified	_KEIFLRELI_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;HSP90AB1|p.I628Sfs*56|1|0.12|ENSG00000096384|chr6:44253195-44253195|A/-|frameshift_variant;ENST00000506915.1_1_4:190394211-190394298:+|nuORF;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;ENST00000559111.1_1_15:99797871-99798159:+|nuORF;nc|ENSG00000224411|Q14568|HSP90AA2P;tr|U7SXW9|U7SXW9_FUSNUChaperoneproteinHtpGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=htpGPE=3SV=1;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	A375_MHC_IP_R1	1	387.9726867675781	3	387.572775	1159.69649	0.088269	3.4211E-05	-0.023511	-9.112E-06	0.064759	2.5099E-05	387.5727270795892	83.922	0.85989	83.922	83.634	84.494	0					46	16	4	0	0	0	0.0093675	1	30699	30699		105.35	9.3108	1	14897000			24371	2057;7095;1722	17690	17817	23873	23873					0.12303437470950485
KEIFLRELI	9	Unmodified	_KEIFLRELI_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;HSP90AB1|p.I628Sfs*56|1|0.12|ENSG00000096384|chr6:44253195-44253195|A/-|frameshift_variant;ENST00000506915.1_1_4:190394211-190394298:+|nuORF;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;ENST00000559111.1_1_15:99797871-99798159:+|nuORF;nc|ENSG00000224411|Q14568|HSP90AA2P;tr|U7SXW9|U7SXW9_FUSNUChaperoneproteinHtpGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=htpGPE=3SV=1;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-SECPEP	A375_MHC_IP_R1	1	580.1737670898438	2	580.855524	1159.69649	-0.34256	-0.00019898	-0.087113	-5.06E-05	-0.42967	-0.00024958	580.8554156295032	83.91	1.1664	83.91	83.634	84.8	0					63	22	4	0	0	0	0.015689	1	30743	30743		111.31	28.78	1	64184000			24372	2057;7095;1722	17690	17817	23874	23874					0.12303437470950485
KEIFLRELI	9	Unmodified	_KEIFLRELI_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;HSP90AB1|p.I628Sfs*56|1|0.12|ENSG00000096384|chr6:44253195-44253195|A/-|frameshift_variant;ENST00000506915.1_1_4:190394211-190394298:+|nuORF;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;ENST00000559111.1_1_15:99797871-99798159:+|nuORF;nc|ENSG00000224411|Q14568|HSP90AA2P;tr|U7SXW9|U7SXW9_FUSNUChaperoneproteinHtpGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=htpGPE=3SV=1;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	A375_MHC_IP_R2	2	387.9726867675781	3	387.572775	1159.69649	-0.13569	-5.2589E-05	0.046447	1.8002E-05	-0.08924	-3.4587E-05	387.5727289119574	83.015	0.96268	83.754	83.393	84.356	0.73962					47	18	4	0	0	0	0.034721	1	31478	31478		70.929	2.1688	1	18289000			24373	2057;7095;1722	17690	17817	23875	23875					0.12303437470950485
KEIFLRELI	9	Unmodified	_KEIFLRELI_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;HSP90AB1|p.I628Sfs*56|1|0.12|ENSG00000096384|chr6:44253195-44253195|A/-|frameshift_variant;ENST00000506915.1_1_4:190394211-190394298:+|nuORF;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;ENST00000559111.1_1_15:99797871-99798159:+|nuORF;nc|ENSG00000224411|Q14568|HSP90AA2P;tr|U7SXW9|U7SXW9_FUSNUChaperoneproteinHtpGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=htpGPE=3SV=1;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-SECPEP	A375_MHC_IP_R2	2	581.62939453125	2	580.855524	1159.69649	-0.30851	-0.0001792	-0.35797	-0.00020793	-0.66649	-0.00038713	580.8553043237598	82.98	0.96268	83.719	83.393	84.356	0.73962					46	18	3	0	0	0	0.010878	1	31515	31515		132.13	34.394	1	70956000			24374	2057;7095;1722	17690	17817	23876	23876					0.12303437470950485
KEIFQKKFL	9	Unmodified	_KEIFQKKFL_					0	0	0		ENSG00000129484|ENST00000429687|PARP2;nc|ENSG00000129484|Q9UGN5|PARP2	ENSG00000129484|ENST00000429687|PARP2	ENSG00000129484|ENST00000429687|PARP2	MULTI-MSMS	A375_MHC_IP_R1	1	394.6411437988281	3	394.241137	1179.70158	0.024366	9.6061E-06	0.10274	4.0505E-05	0.12711	5.0111E-05	394.2411674900786	40.229	0.45893	40.229	40.05	40.509	0					14	8	2	0	0	0	0.26169	1	13839	13839		33.445	10.787	1	3394800			24375	4192	17691	17818	23877	23877					0.11891741333556638
KEIFQKKFL	9	Unmodified	_KEIFQKKFL_					0	0	0		ENSG00000129484|ENST00000429687|PARP2;nc|ENSG00000129484|Q9UGN5|PARP2	ENSG00000129484|ENST00000429687|PARP2	ENSG00000129484|ENST00000429687|PARP2	MULTI-MSMS	A375_MHC_IP_R2	2	394.6409912109375	3	394.241137	1179.70158	-0.2869	-0.00011311	-0.127	-5.0069E-05	-0.4139	-0.00016317	394.2410357878631	39.233	0.61005	40.008	39.812	40.422	0.77451					15	11	2	0	0	0	0.50892	1	14509	14509		19.362	9.818	1	2105100			24376	4192	17691	17818	23878	23878					0.11891741333556638
KEIFTFIWFRL	11	Unmodified	_KEIFTFIWFRL_					0	0	0		ENST00000366541.7_1_1:243663111-243663186:+|nuORF	ENST00000366541.7_1_1:243663111-243663186:+|nuORF	ENST00000366541.7_1_1:243663111-243663186:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.2250671386719	3	500.618495	1498.83366	-0.65707	-0.00032894	0.39154	0.00019601	-0.26553	-0.00013293	500.95300533129625	134.9	0.91335	134.9	134.47	135.39	0					41	17	3	0	0	0	0.73891	2	51961	51961;51990		0.40827	0.31342	1	6179100			24377	11059	17692	17819	23879;23880	23879					0.10419346350477099
KEIGAVKYL	9	Unmodified	_KEIGAVKYL_					0	0	0		ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	511.207763671875	2	510.808042	1019.60153	-0.52352	-0.00026742	0.12833	6.5553E-05	-0.39519	-0.00020186	510.8080202351314	40.129	0.61222	40.129	39.896	40.509	0					32	11	4	0	0	0	0.11849	1	13750	13750		70.332	6.3715	1	24441000			24378	4769	17693	17820	23881	23881					0.09251503999746546
KEIGAVKYL	9	Unmodified	_KEIGAVKYL_					0	0	0		ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	511.2074279785156	2	510.808042	1019.60153	-0.88272	-0.0004509	-0.046256	-2.3628E-05	-0.92897	-0.00047453	510.8079613326187	39.231	0.5599	40.006	39.76	40.32	0.77451					24	10	3	0	0	0	0.14606	1	14455	14455		63.961	0	1	16598000			24379	4769	17693	17820	23882	23882					0.09251503999746546
KEIGDVENW	9	Unmodified	_KEIGDVENW_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-MSMS	A375_MHC_IP_R1	1	545.6638793945312	2	545.264196	1088.51384	-0.39033	-0.00021283	-0.52047	-0.00028379	-0.9108	-0.00049663	545.2638688621264	54.313	0.96072	54.313	53.861	54.822	0					29	16	2	0	0	0	0.0092511	2	19337	19337;19392		117.76	56.403	1	42336000			24380	4683	17694	17821	23883;23884	23883					-0.026877416616798655
KEIGDVENW	9	Unmodified	_KEIGDVENW_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-MSMS	A375_MHC_IP_R2	2	545.663330078125	2	545.264196	1088.51384	-1.3114	-0.00071505	0.01811	9.8745E-06	-1.2933	-0.00070517	545.2642575132039	53.576	1.1264	54.327	53.688	54.815	0.75105					60	21	4	0	0	0	0.0092511	2	20180	20180;20182		103.42	44.741	1	43172000			24381	4683	17694	17821	23885;23886	23885					-0.026877416616798655
KEIGEAVNGF	10	Unmodified	_KEIGEAVNGF_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	A375_MHC_IP_R1	1	532.18798828125	2	532.274564	1062.53457	-0.73225	-0.00038976	0.271	0.00014424	-0.46125	-0.00024551	532.2744916270767	46.651	0.50615	46.651	46.395	46.901	0					17	9	3	0	0	0	0.0079374	1	16350	16350		93.938	46.189	1	3537500			24382	5371	17695	17822	23887	23887					0.0058084871798200766
KEIGEAVNGF	10	Unmodified	_KEIGEAVNGF_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	A375_MHC_IP_R2	2	532.1876831054688	2	532.274564	1062.53457	-0.66608	-0.00035454	0.22601	0.0001203	-0.44008	-0.00023424	532.274715120864	45.791	0.50218	46.557	46.303	46.805	0.76519					13	9	2	0	0	0	0.47932	1	17074	17074		29.437	1.8084	1	2811400			24383	5371	17695	17822	23888	23888					0.0058084871798200766
KEIGENVHIY	10	Unmodified	_KEIGENVHIY_					0	0	0		nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	MULTI-MSMS	A375_MHC_IP_R1	1	601.7142944335938	2	601.31422	1200.61389	-0.18289	-0.00010997	0.088437	5.3178E-05	-0.094452	-5.6795E-05	601.3141920403018	37.479	0.40937	37.479	37.249	37.658	0					19	7	3	0	0	0	0.0031476	1	12634	12634		98.73	63.798	1	11159000			24384	3847	17696	17823	23889	23889					0.02160495672160323
KEIGENVHIY	10	Unmodified	_KEIGENVHIY_					0	0	0		nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	MULTI-SECPEP	A375_MHC_IP_R1	1	401.6120300292969	3	401.211906	1200.61389	-0.13275	-5.3262E-05	-0.1313	-5.2678E-05	-0.26405	-0.00010594	401.21181107627604	37.485	0.51201	37.485	37.249	37.761	0					20	9	3	0	0	0	0.56504	1	12659	12659		29.437	17.21	1	5987900			24385	3847	17696	17823	23890	23890					0.02160495672160323
KEIGENVHIY	10	Unmodified	_KEIGENVHIY_					0	0	0		nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	MULTI-MSMS	A375_MHC_IP_R2	2	601.7140502929688	2	601.31422	1200.61389	-0.8948	-0.00053806	0.15193	9.1358E-05	-0.74287	-0.0004467	601.3143762619088	36.606	0.45773	37.377	37.157	37.615	0.7709					23	8	4	0	0	0	0.0093639	1	13345	13345		128.58	79.024	1	8262800			24386	3847	17696	17823	23891	23891					0.02160495672160323
KEIGENVHIY	10	Unmodified	_KEIGENVHIY_					0	0	0		nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	MULTI-SECPEP	A375_MHC_IP_R2	2	400.9400939941406	3	401.211906	1200.61389	-0.43165	-0.00017318	0.039959	1.6032E-05	-0.39169	-0.00015715	401.21175256952057	36.665	0.45772	37.436	37.106	37.564	0.7709					17	8	3	0	0	0	0.20175	1	13387	13387		46.475	35.576	1	6206700			24387	3847	17696	17823	23892	23892					0.02160495672160323
KEIGTKQSF	9	Unmodified	_KEIGTKQSF_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	A375_MHC_IP_R1	1	519.6846923828125	2	519.284931	1036.55531	-0.66236	-0.00034396	0.0072852	3.7831E-06	-0.65508	-0.00034017	519.2849128940113	19.479	0.30465	19.479	19.318	19.623	0					8	5	2	0	0	0	0.032066	1	4859	4859		73.196	38.795	1	4863700			24388	2388	17697	17824	23893	23893					0.03849439097666618
KEIIPTSEF	9	Unmodified	_KEIIPTSEF_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	A375_MHC_IP_R2	2	532.7152709960938	2	532.28714	1062.55973	-0.62321	-0.00033173	1.1279	0.00060039	0.50474	0.00026866	532.2879621234914	64.443	1.017	65.183	64.496	65.513	0.74022					35	19	2	0	0	0	0.068071	1	24335	24335		57.249	13.391	1	5048400			24389	6043	17698	17825	23894	23894					0.030949035205594555
KEIKDILIQY	10	Unmodified	_KEIKDILIQY_					0	0	0		ENSG00000105193|ENST00000251453|RPS16;ENST00000339471.8_1_19:39923915-39924228:-|nuORF;ENST00000602153.5_1_19:39923915-39924074:-|nuORF;ENST00000599705.1_1_19:39923915-39924331:-|nuORF;ENST00000469078.5_1_19:20235852-20236290:+|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-SECPEP	A375_MHC_IP_R1	1	632.2709350585938	2	631.871371	1261.72819	-0.69115	-0.00043672	0.57871	0.00036567	-0.11243	-7.1044E-05	631.8716906645785	68.69	0.86175	68.69	68.26	69.121	0					39	16	4	0	0	0	0.047329	1	24862	24862		101.54	28.347	1	22884000			24390	2573	17699	17826	23895	23895					0.10779385434238975
KEIKDILIQY	10	Unmodified	_KEIKDILIQY_					0	0	0		ENSG00000105193|ENST00000251453|RPS16;ENST00000339471.8_1_19:39923915-39924228:-|nuORF;ENST00000602153.5_1_19:39923915-39924074:-|nuORF;ENST00000599705.1_1_19:39923915-39924331:-|nuORF;ENST00000469078.5_1_19:20235852-20236290:+|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	A375_MHC_IP_R2	2	632.2706909179688	2	631.871371	1261.72819	-0.7296	-0.00046101	0.03564	2.252E-05	-0.69396	-0.00043849	631.871372736219	67.935	0.81415	68.67	68.307	69.121	0.73511					36	15	4	0	0	0	0.006963	1	25677	25677		132.22	55.395	1	16494000			24391	2573	17699	17826	23896	23896					0.10779385434238975
KEIKDVFAVY	10	Unmodified	_KEIKDVFAVY_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	A375_MHC_IP_R1	1	404.62811279296875	3	404.560535	1210.65977	-0.56278	-0.00022768	1.0552	0.00042691	0.49247	0.00019923	404.5607688915739	65.499	0.56129	65.499	65.156	65.717	0					22	10	3	0	0	0	0.70275	1	23689	23689		11.065	7.993	1	1612600			24392	1462	17700	17827	23897	23897					0.06287140854374229
KEIKDVFAVY	10	Unmodified	_KEIKDVFAVY_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-SECPEP	A375_MHC_IP_R1	1	606.7373046875	2	606.337164	1210.65977	-0.44507	-0.00026986	0.24078	0.00014599	-0.20429	-0.00012387	606.337321742789	65.463	0.56129	65.463	65.156	65.717	0					18	10	2	0	0	0	0.82984	1	23694	23694		37.771	19.636	1	3121800			24393	1462	17700	17827	23898	23898					0.06287140854374229
KEIKDVFAVY	10	Unmodified	_KEIKDVFAVY_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MATCH	A375_MHC_IP_R2	2		2	606.337164	1210.65977	-0.36061	-0.00021865	0.018096	1.0972E-05	-0.34251	-0.00020768	606.3370925791447	64.545	0.50942	65.285	65.054	65.564	0.74022	-0.088961	-0.00014555	NaN	37.771	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3742400			24394	1462	17700	17827							0.06287140854374229
KEIKIPHEF	9	Unmodified	_KEIKIPHEF_					0	0	0		ENSG00000182253|ENST00000336292|SYNM;nc|ENSG00000182253|O15061-2|SYNM	ENSG00000182253|ENST00000336292|SYNM	ENSG00000182253|ENST00000336292|SYNM	MULTI-SECPEP	A375_MHC_IP_R2	2	381.2850646972656	3	380.885241	1139.63389	-0.19423	-7.398E-05	-0.23642	-9.0048E-05	-0.43065	-0.00016403	380.88518323643035	36.33	0.56021	37.101	36.85	37.41	0.7709					22	10	3	0	0	0	0.38578	1	13261	13261		38.615	25.742	1	2907500			24395	8392	17701	17828	23899	23899					0.06966291402750358
KEIKLEVWN	9	Unmodified	_KEIKLEVWN_					0	0	0		tr|U7SGQ2|U7SGQ2_FUSNUDNAmismatchrepairproteinMutLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutLPE=3SV=1	tr|U7SGQ2|U7SGQ2_FUSNUDNAmismatchrepairproteinMutLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutLPE=3SV=1	tr|U7SGQ2|U7SGQ2_FUSNUDNAmismatchrepairproteinMutLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutLPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	386.9258117675781	3	386.888763	1157.64446	0.25637	9.9189E-05	0.29346	0.00011353	0.54983	0.00021272	386.88868106966413	57.446	0.76341	57.446	57.059	57.822	0					36	14	3	0	0	0	0.73804	1	20678	20678		2.086	0.49373	1	7200200			24396	29412	17702	17829	23900	23900					0.07194274057178518
KEIKVLQKI	9	Unmodified	_KEIKVLQKI_					0	0	0		ENST00000520114.1_1_8:38003479-38005900:-|nuORF;ENSG00000147465|ENST00000276449|STAR	ENST00000520114.1_1_8:38003479-38005900:-|nuORF	ENST00000520114.1_1_8:38003479-38005900:-|nuORF	MSMS	A375_MHC_IP_R2	2	366.97088623046875	3	366.91302	1097.71723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.696	1	37.467	36.967	37.967	0.7709								0	0	0	0.15486	1	13393	13393		10.151	2.5416	1				24397	5685	17703	17830	23901	23901					0.17228027850592298
KEILDLKQYL	10	Unmodified	_KEILDLKQYL_					0	0	0		tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	421.9832458496094	3	421.583339	1261.72819	-0.039735	-1.6752E-05	-0.025475	-1.074E-05	-0.06521	-2.7492E-05	421.583271956717	67.902	0.81415	68.637	68.307	69.121	0.73511					46	15	4	0	0	0	0.11994	1	25678	25678		51.765	0	1	20942000			24398	29629	17704	17831	23902	23902					0.10779385434238975
KEILLLYKKI	10	Unmodified	_KEILLLYKKI_					0	0	0			REV__tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1	REV__tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1	MSMS	A375_MHC_IP_R2	2	420.9469909667969	3	420.947842	1259.8217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.792	1	25.436	24.936	25.936	0.64368								0	0	0	0.15622	1	8201	8201		0.62683	0	1		+		24399	28403	17705	17832	23903	23903					0.2021772960731596
KEINNPESVYY	11	Unmodified	_KEINNPESVYY_					0	0	0		nc|ENSG00000095059|P49366-2|DHPS;ENSG00000095059|ENST00000210060|DHPS;ENST00000595844.5_1_19:12787852-12790977:-|nuORF;nc|ENSG00000095059|P49366-3|DHPS	nc|ENSG00000095059|P49366-2|DHPS	nc|ENSG00000095059|P49366-2|DHPS	MULTI-MSMS	A375_MHC_IP_R1	1	679.2261962890625	2	678.327524	1354.6405	-0.21517	-0.00014595	-2.485	-0.0016857	-2.7002	-0.0018316	678.8269679834115	44.575	0.50927	44.575	44.318	44.827	0					20	9	3	0	0	0	0.59391	1	15586	15586		23.79	14.246	1	2532200			24400	2034	17706	17833	23904	23904					-0.022638602271854324
KEINVNINEY	10	Unmodified	_KEINVNINEY_					0	0	0		ENSG00000107554|ENST00000324109|DNMBP;nc|ENSG00000107554|Q6XZF7-2|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	MULTI-SECPEP	A375_MHC_IP_R1	1	618.7163696289062	2	618.31696	1234.61937	-0.55817	-0.00034512	-0.28038	-0.00017337	-0.83855	-0.00051849	618.3163740324081	52.908	0.30303	52.908	52.796	53.099	0					9	5	2	0	0	0	0.22444	1	18881	18881		69.338	8.2483	1	2166800			24401	2742	17707	17834	23905	23905					0.011441744639341778
KEINVNINEY	10	Unmodified	_KEINVNINEY_					0	0	0		ENSG00000107554|ENST00000324109|DNMBP;nc|ENSG00000107554|Q6XZF7-2|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	MULTI-SECPEP	A375_MHC_IP_R2	2	618.2222900390625	2	618.31696	1234.61937	-1.0692	-0.0006611	1.5356	0.00094947	0.46638	0.00028837	618.3180881787619	52.287	0.30289	53.04	52.831	53.134	0.75225					8	5	2	0	0	0	0.15631	1	19669	19669		78.06	2.4899	1	1889300			24402	2742	17707	17834	23906	23906					0.011441744639341778
KEIQGFFSF	9	Unmodified	_KEIQGFFSF_					0	0	0		nc|ENSG00000161542|Q14558|PRPSAP1;ENSG00000161542|ENST00000446526|PRPSAP1	nc|ENSG00000161542|Q14558|PRPSAP1	nc|ENSG00000161542|Q14558|PRPSAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	552.1817626953125	2	551.782025	1101.5495	-0.49787	-0.00027471	0.58458	0.00032256	0.086713	4.7847E-05	551.7822959329067	102.52	0.75754	102.52	102.2	102.96	0					25	14	3	0	0	0	0.0575	1	37671	37671		86.332	21.097	1	2071400			24403	6475	17708	17835	23907	23907					0.0027834058601001743
KEIQGFFSF	9	Unmodified	_KEIQGFFSF_					0	0	0		nc|ENSG00000161542|Q14558|PRPSAP1;ENSG00000161542|ENST00000446526|PRPSAP1	nc|ENSG00000161542|Q14558|PRPSAP1	nc|ENSG00000161542|Q14558|PRPSAP1	MULTI-MSMS	A375_MHC_IP_R2	2	552.1818237304688	2	551.782025	1101.5495	-0.70332	-0.00038808	0.14767	8.1484E-05	-0.55565	-0.0003066	551.7822381928264	101.54	0.66039	102.3	102.06	102.72	0.76429					26	12	3	0	0	0	0.012843	1	38501	38501		92.653	31.296	1	1888600			24404	6475	17708	17835	23908	23908					0.0027834058601001743
KEIRDINRVY	10	Unmodified	_KEIRDINRVY_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF;ENST00000489109.1_1_9:75775238-75780181:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	A375_MHC_IP_R1	1	436.3138732910156	3	435.913971	1304.72008	-0.13658	-5.9538E-05	-0.3896	-0.00016983	-0.52618	-0.00022937	435.91383898908913	25.229	1.2191	25.229	25.002	26.221	0					75	23	5	0	0	0	0.0091722	2	7298	7298;7578		128.87	93.257	1	605420000			24405	4636	17709	17836	23909;23910	23909					0.07991251237444885
KEIRDINRVY	10	Unmodified	_KEIRDINRVY_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF;ENST00000489109.1_1_9:75775238-75780181:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-SECPEP	A375_MHC_IP_R1	1	653.7666625976562	2	653.367318	1304.72008	-0.37939	-0.00024788	-0.57395	-0.000375	-0.95335	-0.00062289	653.3669321485304	25.212	0.45783	25.212	25.053	25.511	0					22	8	3	0	0	0	0.47871	1	7327	7327		51.488	41.337	1	21373000			24406	4636	17709	17836	23911	23911					0.07991251237444885
KEIRDINRVY	10	Unmodified	_KEIRDINRVY_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF;ENST00000489109.1_1_9:75775238-75780181:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	A375_MHC_IP_R2	2	436.3135681152344	3	435.913971	1304.72008	-0.6452	-0.00028125	-0.31087	-0.00013551	-0.95607	-0.00041677	435.91390439096733	24.594	1.0678	25.237	25.06	26.128	0.64368					73	20	5	0	0	0	0.011719	1	8079	8079		112.95	80.048	1	689680000			24407	4636	17709	17836	23912	23912					0.07991251237444885
KEIRDINRVY	10	Unmodified	_KEIRDINRVY_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF;ENST00000489109.1_1_9:75775238-75780181:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	A375_MHC_IP_R2	2	653.7665405273438	2	653.367318	1304.72008	-1.1747	-0.00076749	-0.095795	-6.2589E-05	-1.2705	-0.00083008	653.3672345945901	24.594	0.55882	25.237	25.06	25.619	0.64368					26	10	3	0	0	0	0.12083	1	8106	8106		67.081	49.968	1	26630000			24408	4636	17709	17836	23913	23913					0.07991251237444885
KEIRDINRVY	10	Unmodified	_KEIRDINRVY_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF;ENST00000489109.1_1_9:75775238-75780181:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-SECPEP	A375_MHC_IP_R2	2	436.13720703125	3	435.913971	1304.72008	-0.69835	-0.00030442	-0.20176	-8.7948E-05	-0.90011	-0.00039237	436.2481101815206	26.323	0.76235	26.983	26.347	27.109	0.65992					18	14	2	0	0	0	0.94102	1	8850	8850		1.4551	1.0469	1	1790300			24409	4636	17709	17836	23914	23914					0.07991251237444885
KEIRKPGRKYE	11	Unmodified	_KEIRKPGRKYE_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	MULTI-MSMS	A375_MHC_IP_R1	1	702.8387451171875	2	702.409518	1402.80448	-0.9616	-0.00067544	-0.1377	-9.6724E-05	-1.0993	-0.00077216	702.4087938490987	149.18	1.9701	149.18	147.9	149.87	0					141	51	4	0	0	0	0.73822	1	57108	57108		1.0715	0.10919	1	924770			24410	2393	17710	17837	23915	23915					0.11919202054241396
KEIRRHSRRK	10	Unmodified	_KEIRRHSRRK_					0	0	0			REV__ENST00000403963.5_1_7:14249142-14880939:-|nuORF	REV__ENST00000403963.5_1_7:14249142-14880939:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	683.8179321289062	2	683.418543	1364.82253	-0.98151	-0.00067078	0.9688	0.0006621	-0.012705	-8.6831E-06	683.4187977812403	143.05	1.0096	143.05	142.38	143.39	0					42	19	4	0	0	0	0.72481	1	54810	54810		1.1933	0.23107	1	4725000	+		24411	18926	17711	17838	23916	23916					0.15471381819565977
KEIRRHSRRK	10	Unmodified	_KEIRRHSRRK_					0	0	0			REV__ENST00000403963.5_1_7:14249142-14880939:-|nuORF	REV__ENST00000403963.5_1_7:14249142-14880939:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	683.8189086914062	2	683.418543	1364.82253	-0.46259	-0.00031614	0.50256	0.00034346	0.039972	2.7318E-05	683.4187627805778	143.03	0.86017	143.06	142.64	143.5	0.030731					27	16	2	0	0	0	0.72481	1	55855	55855		1.1933	0.79263	1	5930900	+		24412	18926	17711	17838	23917	23917					0.15471381819565977
KEIRRHSRRK	10	Unmodified	_KEIRRHSRRK_					0	0	0			REV__ENST00000403963.5_1_7:14249142-14880939:-|nuORF	REV__ENST00000403963.5_1_7:14249142-14880939:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	683.418543	1364.82253	-0.98151	-0.00067078	0.9688	0.0006621	-0.012705	-8.6831E-06	683.4187977812403	143.05	1.0096	143.05	142.38	143.39	0	-0.0061341	0.00053002	NaN	1.1933	42	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4725000	+		24413	18926	17711	17838							0.15471381819565977
KEIRRHSRRK	10	Unmodified	_KEIRRHSRRK_					0	0	0			REV__ENST00000403963.5_1_7:14249142-14880939:-|nuORF	REV__ENST00000403963.5_1_7:14249142-14880939:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	683.418543	1364.82253	-0.46259	-0.00031614	0.50256	0.00034346	0.039972	2.7318E-05	683.4187627805778	143.03	0.86017	143.06	142.64	143.5	0.030731	0.0061341	-0.00010725	NaN	1.1933	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5930900	+		24414	18926	17711	17838							0.15471381819565977
KEISMMFL	8	Unmodified	_KEISMMFL_					0	0	0			REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	MSMS	A375_MHC_IP_R2	2	499.66015625	2	499.756107	997.49766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.52	1	51.274	50.774	51.774	0.75406								0	0	0	0.16876	1	19000	19000		24.674	2.9272	1		+		24415	28309	17712	17839	23918	23918					-0.0011886242377840972
KEISNVSSF	9	Unmodified	_KEISNVSSF_					0	0	0		ENSG00000117000|ENST00000372771|RLF	ENSG00000117000|ENST00000372771|RLF	ENSG00000117000|ENST00000372771|RLF	MULTI-MSMS	A375_MHC_IP_R1	1	506.16082763671875	2	505.761289	1009.50803	-0.2198	-0.00011116	-0.22336	-0.00011297	-0.44316	-0.00022413	505.7611760979787	37.322	0.40912	37.322	37.096	37.505	0					17	7	3	0	0	0	0.027818	1	12583	12583		76.825	1.8958	1	4599000			24416	3451	17713	17840	23919	23919					0.0036515982667424396
KEISNVSSF	9	Unmodified	_KEISNVSSF_					0	0	0		ENSG00000117000|ENST00000372771|RLF	ENSG00000117000|ENST00000372771|RLF	ENSG00000117000|ENST00000372771|RLF	MULTI-SECPEP	A375_MHC_IP_R2	2	506.16094970703125	2	505.761289	1009.50803	-1.0907	-0.00055161	0.40302	0.00020383	-0.68763	-0.00034778	505.7614493951642	36.473	0.81343	37.244	36.953	37.767	0.7709					26	15	2	0	0	0	0.27742	1	13303	13303		43.772	3.8227	1	5692100			24417	3451	17713	17840	23920	23920					0.0036515982667424396
KEIVKSTV	8	Unmodified	_KEIVKSTV_					0	0	0			REV__ENSG00000132703|ENST00000255040|APCS	REV__ENSG00000132703|ENST00000255040|APCS	MSMS	A375_MHC_IP_R1	1	452.3325500488281	2	452.279118	902.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.62	1	137.62	137.12	138.12	0								0	0	0	0.16876	1	52968	52968		1.8442	0	1		+		24418	18672	17714	17841	23921	23921					0.08851242074319998
KEIVRGYKW	9	Unmodified	_KEIVRGYKW_					0	0	0		nc|ENSG00000054148|Q9NRX4-2|PHPT1;ENSG00000054148|ENST00000247665|PHPT1;ENST00000492540.5_1_9:139743852-139744679:+|nuORF	nc|ENSG00000054148|Q9NRX4-2|PHPT1	nc|ENSG00000054148|Q9NRX4-2|PHPT1	MULTI-MSMS	A375_MHC_IP_R1	1	393.9606628417969	3	393.560869	1177.66078	-0.24726	-9.7312E-05	-0.33613	-0.00013229	-0.58339	-0.0002296	393.5607082909457	29.022	0.55788	29.022	28.845	29.403	0					16	10	2	0	0	0	0.017727	1	9049	9049		86.332	50.72	1	9052300			24419	1255	17715	17842	23922	23922					0.07905400013919461
KEIVRGYKW	9	Unmodified	_KEIVRGYKW_					0	0	0		nc|ENSG00000054148|Q9NRX4-2|PHPT1;ENSG00000054148|ENST00000247665|PHPT1;ENST00000492540.5_1_9:139743852-139744679:+|nuORF	nc|ENSG00000054148|Q9NRX4-2|PHPT1	nc|ENSG00000054148|Q9NRX4-2|PHPT1	MULTI-MSMS	A375_MHC_IP_R2	2	393.9606018066406	3	393.560869	1177.66078	-0.45329	-0.0001784	-0.23462	-9.2339E-05	-0.68792	-0.00027074	393.5608394220527	28.209	0.40509	28.887	28.655	29.06	0.67857					16	7	3	0	0	0	0.035419	1	9733	9733		70.332	28.02	1	7831700			24420	1255	17715	17842	23923	23923					0.07905400013919461
KEIYAYKFL	9	Unmodified	_KEIYAYKFL_					0	0	0		tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	588.72998046875	2	587.828975	1173.6434	-0.24617	-0.0001447	0.48564	0.00028547	0.23947	0.00014077	587.8290856681983	102.93	1.1192	102.93	102.45	103.57	0					63	21	4	0	0	0	0.67332	1	37950	37950		9.3831	0	1	8978700			24421	29671	17716	17843	23924	23924					0.06352059688288136
KEIYHWKRWL	10	Unmodified	_KEIYHWKRWL_					0	0	0		DMXL2|p.P1052L|1|0.23|ENSG00000104093|chr15:51500069-51500069|G/A|missense_variant	DMXL2|p.P1052L|1|0.23|ENSG00000104093|chr15:51500069-51500069|G/A|missense_variant	DMXL2|p.P1052L|1|0.23|ENSG00000104093|chr15:51500069-51500069|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	487.338134765625	3	486.93834	1457.79319	-0.5337	-0.00025988	0.30498	0.0001485	-0.22873	-0.00011138	486.93829727164297	132.85	0.71091	133.02	132.74	133.45	0.16487					20	13	2	0	0	0	0.94918	1	52231	52231		1.7423	1.2363	1	5283600			24422	757	17717	17844	23925	23925					0.08260424750756101
KEKANVTNL	9	Unmodified	_KEKANVTNL_					0	0	0		ENSG00000264717|ENST00000576178|NPY4R2;ENSG00000204174|ENST00000374312|NPY4R	ENSG00000264717|ENST00000576178|NPY4R2	ENSG00000264717|ENST00000576178|NPY4R2	MSMS	A375_MHC_IP_R1	1	508.71075439453125	2	508.790381	1015.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.415	1	41.415	40.915	41.915	0								0	0	0	0.11332	1	14294	14294		37.974	1.4678	1				24423	9411	17718	17845	23926	23926					0.059048414719427456
KEKDERILW	9	Unmodified	_KEKDERILW_					0	0	0		ENST00000498205.5_1_3:156260994-156266845:-|nuORF;ENST00000467733.1_1_3:156262080-156272878:-|nuORF;ENSG00000114850|ENST00000265044|SSR3	ENST00000498205.5_1_3:156260994-156266845:-|nuORF	ENST00000498205.5_1_3:156260994-156266845:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	406.62738037109375	3	406.227667	1215.66117	-0.18365	-7.4603E-05	-0.043787	-1.7788E-05	-0.22744	-9.2391E-05	406.2276049087656	34.616	0.70942	35.379	35.119	35.829	0.76338					30	13	3	0	0	0	0.18338	1	12498	12498		39.213	17.414	1	4248200			24424	3249	17719	17846	23927	23927					0.061967749431460106
KEKDERILW	9	Unmodified	_KEKDERILW_					0	0	0		ENST00000498205.5_1_3:156260994-156266845:-|nuORF;ENST00000467733.1_1_3:156262080-156272878:-|nuORF;ENSG00000114850|ENST00000265044|SSR3	ENST00000498205.5_1_3:156260994-156266845:-|nuORF	ENST00000498205.5_1_3:156260994-156266845:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	406.227667	1215.66117	-0.11888	-4.8293E-05	-0.10015	-4.0683E-05	-0.21903	-8.8976E-05	406.22767155637035	35.521	0.56276	35.521	35.319	35.881	0	0.070865	-2.9076E-05	NaN	39.213	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4002400			24425	3249	17719	17846							0.061967749431460106
KEKEYWRQHEE	11	Unmodified	_KEKEYWRQHEE_					0	0	0			REV__nc|ENSG00000130396|P55196-1|AFDN	REV__nc|ENSG00000130396|P55196-1|AFDN	MSMS	A375_MHC_IP_R2	2	781.1779174804688	2	781.373329	1560.73211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.01	1	93.749	93.249	94.249	0.73902								0	0	0	0.16337	1	35364	35364		1.1933	0.84271	1		+		24426	18537	17720	17847	23928	23928					-0.025831768100033514
KEKIVRSF	8	Unmodified	_KEKIVRSF_					0	0	0		ENSG00000011260|ENST00000225298|UTP18	ENSG00000011260|ENST00000225298|UTP18	ENSG00000011260|ENST00000225298|UTP18	MULTI-SECPEP	A375_MHC_IP_R1	1	504.2055358886719	2	503.805834	1005.59712	-0.34143	-0.00017201	-0.11029	-5.5564E-05	-0.45172	-0.00022758	503.8057134553492	37.17	0.45665	37.17	36.945	37.402	0					18	8	3	0	0	0	0.78327	1	12501	12501		45.74	15.899	1	7199400			24427	996	17721	17848	23929	23929					0.09454039576860396
KEKIVRSF	8	Unmodified	_KEKIVRSF_					0	0	0		ENSG00000011260|ENST00000225298|UTP18	ENSG00000011260|ENST00000225298|UTP18	ENSG00000011260|ENST00000225298|UTP18	MULTI-SECPEP	A375_MHC_IP_R2	2	504.20562744140625	2	503.805834	1005.59712	-0.78236	-0.00039416	0.14655	7.3833E-05	-0.6358	-0.00032032	503.8059465189162	36.17	0.46027	36.941	36.646	37.106	0.7709					20	8	3	0	0	0	0.87552	1	13142	13142		34.932	21.026	1	5885800			24428	996	17721	17848	23930	23930					0.09454039576860396
KEKKKKKKKIF	11	Unmodified	_KEKKKKKKKIF_					0	0	0			REV__ENST00000367142.4_1_1:205687259-205687394:-|nuORF	REV__ENST00000367142.4_1_1:205687259-205687394:-|nuORF	MSMS	A375_MHC_IP_R2	2	716.8026123046875	2	716.989946	1431.96534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.59	1	108.34	107.84	108.84	0.75436								0	0	0	0.1636	1	40641	40641		0	0	1		+		24429	23955	17722	17849	23931	23931					0.2666357643824995
KEKKQYRRKKQ	11	Unmodified	_KEKKQYRRKKQ_					0	0	0			REV__ENST00000282964.5_1_21:21112145-21112373:+|nuORF	REV__ENST00000282964.5_1_21:21112145-21112373:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	506.5379333496094	3	507.310836	1518.91068	-0.5483	-0.00027816	-3.3362	-0.0016925	-3.8845	-0.0019707	507.3082913022758	141.8	0.40627	141.83	141.57	141.98	0.030731					10	7	2	0	0	0	1.0015	1	55442	55442		0.094841	0	1	419840	+		24430	23326	17723	17850	23932	23932					0.17197957619532644
KEKKRKKKKKS	11	Unmodified	_KEKKRKKKKKS_					0	0	0			REV__ENST00000078429.8_1_19:3121173-3121524:+|nuORF	REV__ENST00000078429.8_1_19:3121173-3121524:+|nuORF	MSMS	A375_MHC_IP_R1	1	708.5330810546875	2	708.480277	1414.946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.053	1	78.053	77.553	78.553	0								0	0	0	0.16353	1	28489	28489		0.35063	0	1		+		24431	23010	17724	17851	23933	23933					0.2551262014733311
KEKLRLAY	8	Unmodified	_KEKLRLAY_					0	0	0			REV__ENSG00000062822|ENST00000440232|POLD1	REV__ENSG00000062822|ENST00000440232|POLD1	MULTI-SECPEP	A375_MHC_IP_R2	2	510.1924743652344	2	510.813659	1019.61277	-1.0528	-0.00053779	-0.12295	-6.2804E-05	-1.1758	-0.00060059	510.8135519822543	38.735	0.45933	39.51	39.3	39.76	0.77451					12	8	2	0	0	0	0.972	1	14337	14337		8.5933	1.8701	1	2298100	+		24432	16461	17725	17852	23934	23934					0.10374326093892705
KEKNEEFYVQW	11	Unmodified	_KEKNEEFYVQW_					0	0	0			REV__tr|U7T5U6|U7T5U6_FUSNUDUF4352domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00394PE=4SV=1	REV__tr|U7T5U6|U7T5U6_FUSNUDUF4352domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00394PE=4SV=1	MSMS	A375_MHC_IP_R1	1	500.4749450683594	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.121	1	74.121	73.621	74.621	0								0	0	0	0.16302	1	26999	26999		1.2148	0	1		+		24433	28837	17726	17853	23935	23935					-0.02016195927467379
KEKNEEFYVQW	11	Unmodified	_KEKNEEFYVQW_					0	0	0			REV__tr|U7T5U6|U7T5U6_FUSNUDUF4352domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00394PE=4SV=1	REV__tr|U7T5U6|U7T5U6_FUSNUDUF4352domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00394PE=4SV=1	MSMS	A375_MHC_IP_R2	2	500.6192321777344	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.245	1	100	99.504	100.5	0.75977								0	0	0	0.16302	1	37648	37648		1.2148	0	1		+		24434	28837	17726	17853	23936	23936					-0.02016195927467379
KEKNNFSF	8	Unmodified	_KEKNNFSF_					0	0	0		ENST00000379441.7_1_12:56992027-56992288:-|nuORF	ENST00000379441.7_1_12:56992027-56992288:-|nuORF	ENST00000379441.7_1_12:56992027-56992288:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.6560363769531	2	507.256174	1012.49779	-0.3468	-0.00017592	-0.15467	-7.8459E-05	-0.50147	-0.00025438	507.2559998645263	28.434	0.50668	28.434	28.238	28.745	0					20	9	3	0	0	0	0.28442	1	8792	8792		78.728	0	1	6390300			24435	11335	17727	17854	23937	23937					-0.007954031079066226
KEKPLIKLP	9	Unmodified	_KEKPLIKLP_					0	0	0		PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.P321L|1|0.37|ENSG00000173193|chr3:122699516-122699516|C/T|missense_variant	PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant	PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	356.6295166015625	3	355.905865	1064.69577	-0.37182	-0.00013233	1.0481	0.00037304	0.67631	0.0002407	355.9047957734494	29.683	1.5557	29.683	29.403	30.959	0					82	30	4	0	0	0	0.66474	1	9439	9439		10.151	1.1743	1	25477000			24436	15111	17728	17855	23938	23938					0.16600642821890688
KEKQLAQIKK	10	Unmodified	_KEKQLAQIKK_					0	0	0			REV__ENSG00000108091|ENST00000263102|CCDC6	REV__ENSG00000108091|ENST00000263102|CCDC6	MULTI-MSMS	A375_MHC_IP_R2	2	405.9626770019531	3	405.259079	1212.75541	-0.3125	-0.00012664	2.8656	0.0011613	2.5531	0.0010346	405.25888238550687	20.349	0.6611	20.959	20.651	21.312	0.6103					32	12	4	0	0	0	0.58757	1	6346	6346		21.799	5.5249	1	941030	+		24437	17514	17729	17856	23939	23939					0.15753913765252037
KEKQYKKE	8	Unmodified	_KEKQYKKE_					0	0	0		nc|ENSG00000291287|Q5SQ80|ANKRD20A2P;nc|ENSG00000276203|Q5VUR7|ANKRD20A3P;nc|ENSG00000172014|Q4UJ75|ANKRD20A4P;ENSG00000260691|ENST00000562196|ANKRD20A1;nc|ENSG00000229089|Q5CZ79-2|ANKRD20A8P;nc|ENSG00000229089|Q5CZ79|ANKRD20A8P;ENST00000432432.6_1_2:95480778-95522914:-|nuORF	nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	MULTI-SECPEP	A375_MHC_IP_R1	1	541.1510620117188	2	540.806031	1079.59751	-0.67833	-0.00036685	0.25776	0.0001394	-0.42057	-0.00022745	540.8060921713477	25.466	0.20456	25.466	25.357	25.562	0					5	3	2	0	0	0	0.972	1	7405	7405		3.9444	0	1	905700			24438	9932	17730	17857	23940	23940					0.060894145060501614
KEKRHKKKKPK	11	Unmodified	_KEKRHKKKKPK_					0	0	0			REV__nc|ENSG00000065000|O14617|AP3D1	REV__nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	A375_MHC_IP_R1	1	718.5210571289062	2	717.972619	1433.93069	-0.76444	-0.00054885	3.7443	0.0026883	2.9799	0.0021395	718.4767551514302	124.92	0.14983	124.92	124.85	125	0					4	2	2	0	0	0	0.73647	1	47245	47245		2.7352	1.5419	1	7356500	+		24439	16486	17731	17858	23941	23941					0.2310775335015478
KEKRKRRW	8	Unmodified	_KEKRKRRW_					0	0	0			REV__nc|ENSG00000122223|Q9BZW8-4|CD244;REV__ENST00000481677.1_1_1:160808287-160808924:-|nuORF	REV__nc|ENSG00000122223|Q9BZW8-4|CD244	MULTI-MSMS	A375_MHC_IP_R1	1	396.647216796875	3	396.247507	1185.72069	-0.39755	-0.00015753	0.23665	9.3773E-05	-0.16089	-6.3754E-05	396.24754328376673	26.399	0.86178	26.399	25.866	26.728	0					36	16	3	0	0	0	0.77675	1	7756	7756		6.7232	0	1	14443000	+		24440	18195;25264	17732	17859	23942	23942					0.13526135467850509
KEKRRTKSLLE	11	Unmodified	_KEKRRTKSLLE_					0	0	0		BOD1L1|p.S2975Lfs*72|1|0.17|ENSG00000038219|chr4:13576953-13576953|A/-|frameshift_variant;ENSG00000038219|ENST00000040738|BOD1L1	BOD1L1|p.S2975Lfs*72|1|0.17|ENSG00000038219|chr4:13576953-13576953|A/-|frameshift_variant	BOD1L1|p.S2975Lfs*72|1|0.17|ENSG00000038219|chr4:13576953-13576953|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	463.6836853027344	3	463.284175	1386.8307	-0.47885	-0.00022184	-0.63176	-0.00029269	-1.1106	-0.00051453	463.28382365189185	132.38	2.0315	132.38	131.88	133.91	0					117	39	4	0	0	0	0.73881	1	51280	51280		0.50596	0.50596	1	41434000			24441	243	17733	17860	23943	23943					0.15275471225709225
KEKRRTKSLLE	11	Unmodified	_KEKRRTKSLLE_					0	0	0		BOD1L1|p.S2975Lfs*72|1|0.17|ENSG00000038219|chr4:13576953-13576953|A/-|frameshift_variant;ENSG00000038219|ENST00000040738|BOD1L1	BOD1L1|p.S2975Lfs*72|1|0.17|ENSG00000038219|chr4:13576953-13576953|A/-|frameshift_variant	BOD1L1|p.S2975Lfs*72|1|0.17|ENSG00000038219|chr4:13576953-13576953|A/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	463.284175	1386.8307	-0.51242	-0.0002374	-0.67366	-0.00031209	-1.1861	-0.00054949	463.28383170695105	132.3	1.7781	132.49	131.8	133.58	0.18953	0.05099	-2.262E-05	NaN	0.50596	106	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34776000			24442	243	17733	17860							0.15275471225709225
KEKSRFDYRLY	11	Unmodified	_KEKSRFDYRLY_					0	0	0			REV__tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1	REV__tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	753.2979736328125	2	752.898983	1503.78341	-0.90728	-0.00068309	-0.33349	-0.00025109	-1.2408	-0.00093418	752.8984107467626	129.86	0.35402	130.07	129.94	130.3	0.2142					11	6	2	0	0	0	0.73318	1	51060	51060		10.8	5.0677	1	44242000	+		24443	28581	17734	17861	23944	23944					0.05167191954728878
KEKVLKEIR	9	Unmodified	_KEKVLKEIR_					0	0	0			REV__ENST00000493328.5_1_1:35452707-35454621:-|nuORF	REV__ENST00000493328.5_1_1:35452707-35454621:-|nuORF	MSMS	A375_MHC_IP_R1	1	381.63134765625	3	381.580041	1141.71829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.3	1	30.3	29.8	30.8	0								0	0	0	0.15486	1	9611	9611		2.086	0	1		+		24444	25422	17735	17862	23945	23945					0.15310242219493375
KEKYPDLANFW	11	Unmodified	_KEKYPDLANFW_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000549137.1_1_12:50039600-50046016:-|nuORF	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-SECPEP	A375_MHC_IP_R1	1	471.3059997558594	3	470.906594	1409.69795	-0.44902	-0.00021144	0.065237	3.072E-05	-0.38378	-0.00018072	471.24088537916185	87.43	0.45856	87.43	87.186	87.644	0					20	8	4	0	0	0	0.66194	1	32091	32091		31.446	23.002	1	1837700			24445	6485	17736	17863	23946	23946					0.00949026769012562
KEKYPDLANFW	11	Unmodified	_KEKYPDLANFW_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000549137.1_1_12:50039600-50046016:-|nuORF	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MATCH	A375_MHC_IP_R2	2		3	470.906594	1409.69795	-0.45694	-0.00021518	0.19427	9.1483E-05	-0.26267	-0.00012369	470.90663054150184	86.75	0.51105	87.483	87.151	87.662	0.733	0.026729	0.00010009	NaN	36.955	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1440600			24446	6485	17736	17863							0.00949026769012562
KELAEAASKW	10	Unmodified	_KELAEAASKW_					0	0	0		nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-7|PPHLN1;ENST00000547440.1_1_12:42781241-42792805:+|nuORF;nc|ENSG00000134283|Q8NEY8-5|PPHLN1;ENST00000552202.5_1_12:42726503-42792805:+|nuORF	nc|ENSG00000134283|Q8NEY8-3|PPHLN1	nc|ENSG00000134283|Q8NEY8-3|PPHLN1	MULTI-MSMS	A375_MHC_IP_R2	2	378.6048278808594	3	378.204751	1131.59242	0.1067	4.0353E-05	-0.10204	-3.8591E-05	0.004661	1.7628E-06	378.20494299552104	30.918	0.81066	31.636	31.266	32.077	0.71857					33	15	3	0	0	0	0.61676	1	10894	10894		19.615	7.4406	1	3123500			24447	14609	17737	17864	23947	23947					0.031891106434159155
KELAEAASKW	10	Unmodified	_KELAEAASKW_					0	0	0		nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-7|PPHLN1;ENST00000547440.1_1_12:42781241-42792805:+|nuORF;nc|ENSG00000134283|Q8NEY8-5|PPHLN1;ENST00000552202.5_1_12:42726503-42792805:+|nuORF	nc|ENSG00000134283|Q8NEY8-3|PPHLN1	nc|ENSG00000134283|Q8NEY8-3|PPHLN1	MULTI-MATCH	A375_MHC_IP_R1	1		3	378.204751	1131.59242	0.39614	0.00014982	-0.0079006	-2.9881E-06	0.38824	0.00014683	378.20484498427146	31.672	0.50655	31.672	31.363	31.87	0	0.018081	3.5823E-05	NaN	19.615	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2189100			24448	14609	17737	17864							0.031891106434159155
KELALVKRL	9	Unmodified	_KELALVKRL_					0	0	0		ENST00000540837.1_12:9097984-9102109:-|nuORF;ENSG00000003056|ENST00000000412|M6PR	ENST00000540837.1_12:9097984-9102109:-|nuORF	ENST00000540837.1_12:9097984-9102109:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	357.6411437988281	3	357.241248	1068.70191	0.0078426	2.8017E-06	-0.060433	-2.1589E-05	-0.05259	-1.8787E-05	357.241195144188	34.223	0.50637	34.223	33.95	34.456	0					23	9	3	0	0	0	0.063448	1	11236	11236		59.052	3.8178	1	10232000			24449	857	17738	17865	23948	23948					0.1703116105340996
KELALVKRL	9	Unmodified	_KELALVKRL_					0	0	0		ENST00000540837.1_12:9097984-9102109:-|nuORF;ENSG00000003056|ENST00000000412|M6PR	ENST00000540837.1_12:9097984-9102109:-|nuORF	ENST00000540837.1_12:9097984-9102109:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	357.64068603515625	3	357.241248	1068.70191	-0.37006	-0.0001322	-0.21148	-7.555E-05	-0.58154	-0.00020775	357.2411645749929	33.159	0.5103	33.911	33.584	34.095	0.75225					24	9	3	0	0	0	0.053667	1	11817	11817		62.869	20.033	1	8127700			24450	857	17738	17865	23949	23949					0.1703116105340996
KELAYWYSWGL	11	Unmodified	_KELAYWYSWGL_					0	0	0			REV__nc|ENSG00000135677|P15586-2|GNS	REV__nc|ENSG00000135677|P15586-2|GNS	MSMS	A375_MHC_IP_R2	2	708.3214721679688	2	708.353345	1414.69214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.34	1	132.53	132.03	133.03	0.18953								0	0	0	0.16302	1	52062	52062		2.9952	0	1		+		24451	18874	17739	17866	23950	23950					0.0013792825736800296
KELDFKRIVLP	11	Unmodified	_KELDFKRIVLP_					0	0	0		tr|U7T3W5|U7T3W5_FUSNUProteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00640PE=4SV=1	tr|U7T3W5|U7T3W5_FUSNUProteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00640PE=4SV=1	tr|U7T3W5|U7T3W5_FUSNUProteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00640PE=4SV=1	MSMS	A375_MHC_IP_R1	1	679.48876953125	2	679.413737	1356.81292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.83	1	141.83	141.33	142.33	0								0	0	0	0.16337	1	54427	54427		1.1933	0	1				24452	29986	17740	17867	23951	23951					0.14878755970858037
KELDGLWSF	9	Unmodified	_KELDGLWSF_					0	0	0		nc|ENSG00000169919|P08236-2|GUSB;ENSG00000169919|ENST00000304895|GUSB;nc|ENSG00000169919|P08236-3|GUSB	nc|ENSG00000169919|P08236-2|GUSB	nc|ENSG00000169919|P08236-2|GUSB	MULTI-MSMS	A375_MHC_IP_R1	1	547.692626953125	2	547.779482	1093.54441	-0.27468	-0.00015047	0.3981	0.00021807	0.12342	6.7606E-05	547.7797430444796	108.55	0.71033	108.55	108.21	108.92	0					24	13	3	0	0	0	0.29123	1	39739	39739		31.268	7.2478	1	2284700			24453	7452	17741	17868	23952	23952					0.0013803672338781325
KELDGLWSF	9	Unmodified	_KELDGLWSF_					0	0	0		nc|ENSG00000169919|P08236-2|GUSB;ENSG00000169919|ENST00000304895|GUSB;nc|ENSG00000169919|P08236-3|GUSB	nc|ENSG00000169919|P08236-2|GUSB	nc|ENSG00000169919|P08236-2|GUSB	MULTI-SECPEP	A375_MHC_IP_R2	2	548.1797485351562	2	547.779482	1093.54441	-0.81948	-0.00044889	-0.0039273	-2.1513E-06	-0.82341	-0.00045105	547.7797502719507	107.76	0.45955	108.52	108.2	108.66	0.75436					16	8	2	0	0	0	0.33896	1	40718	40718		47.594	13.193	1	1623000			24454	7452	17741	17868	23953	23953					0.0013803672338781325
KELDLSLRNL	10	Unmodified	_KELDLSLRNL_					0	0	0			REV__ENSG00000138778|ENST00000265148|CENPE	REV__ENSG00000138778|ENST00000265148|CENPE	MULTI-MSMS	A375_MHC_IP_R1	1	401.3028869628906	3	400.903072	1199.68739	-0.51179	-0.00020518	0.19907	7.981E-05	-0.31271	-0.00012537	400.90307790756043	27.923	0.50443	27.923	27.634	28.138	0					17	9	3	0	0	0	0.32622	1	8564	8564		38.559	0	1	5366900	+		24455	19122	17742	17869	23954	23954					0.0955304411461384
KELDLSLRNL	10	Unmodified	_KELDLSLRNL_					0	0	0			REV__ENSG00000138778|ENST00000265148|CENPE	REV__ENSG00000138778|ENST00000265148|CENPE	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	400.903072	1199.68739	-0.51179	-0.00020518	0.19907	7.981E-05	-0.31271	-0.00012537	400.90307790756043	27.923	0.50443	27.923	27.634	28.138	0	-0.0026208	0.00014163	NaN	38.559	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5366900	+		24456	19122	17742	17869							0.0955304411461384
KELDLSLRNL	10	Unmodified	_KELDLSLRNL_					0	0	0			REV__ENSG00000138778|ENST00000265148|CENPE	REV__ENSG00000138778|ENST00000265148|CENPE	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	400.903072	1199.68739	-0.025605	-1.0265E-05	-0.15535	-6.2281E-05	-0.18096	-7.2546E-05	400.90307737795064	27.25	0.46016	27.928	27.587	28.047	0.67857	0.0026208	-0.00028464	NaN	38.559	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3404500	+		24457	19122	17742	17869							0.0955304411461384
KELDPTNMTY	10	Oxidation (M)	_KELDPTNM(Oxidation (M))TY_		KELDPTNM(1)TY		KELDPTNM(150)TY	0	0	1		nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1	nc|ENSG00000168439|P31948-3|STIP1	nc|ENSG00000168439|P31948-3|STIP1	MULTI-MSMS	A375_MHC_IP_R1	1	614.6817016601562	2	614.281728	1226.5489	-0.36096	-0.00022173	-0.068646	-4.2168E-05	-0.42961	-0.0002639	614.2817240193586	34.141	0.35292	34.141	33.95	34.303	0					10	6	2	0	0	0	2.5088E-05	1	11232	11232		154.75	76.025	1	2858800			24458	7302	17743	17870	23955	23955		372			-0.05530866916024024
KELDPTNMTY	10	Oxidation (M)	_KELDPTNM(Oxidation (M))TY_		KELDPTNM(1)TY		KELDPTNM(63)TY	0	0	1		nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1	nc|ENSG00000168439|P31948-3|STIP1	nc|ENSG00000168439|P31948-3|STIP1	MULTI-MSMS	A375_MHC_IP_R2	2	614.6815795898438	2	614.281728	1226.5489	-0.64201	-0.00039437	-0.042499	-2.6107E-05	-0.68451	-0.00042048	614.2815324443045	32.715	0.35465	33.452	33.265	33.62	0.73691					14	6	3	0	0	0	0.10407	1	11717	11717		62.78	22.83	1	3307300			24459	7302	17743	17870	23956	23956		372			-0.05530866916024024
KELDPTNMTY	10	Oxidation (M)	_KELDPTNM(Oxidation (M))TY_		KELDPTNM(1)TY		KELDPTNM(71)TY	0	0	1		nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1	nc|ENSG00000168439|P31948-3|STIP1	nc|ENSG00000168439|P31948-3|STIP1	MULTI-MSMS	A375_MHC_IP_R2	2	614.6814575195312	2	614.281728	1226.5489	-1.0099	-0.00062039	0.1472	9.0423E-05	-0.86275	-0.00052997	614.2818212665009	33.52	0.40675	34.272	34.043	34.45	0.75225					12	7	2	0	0	0	0.067551	1	12033	12033		70.929	30.689	1	4018900			24460	7302	17743	17870	23957	23957		372			-0.05530866916024024
KELDPTNMTY	10	Unmodified	_KELDPTNMTY_					0	0	0		nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1	nc|ENSG00000168439|P31948-3|STIP1	nc|ENSG00000168439|P31948-3|STIP1	MULTI-SECPEP	A375_MHC_IP_R1	1	606.6866455078125	2	606.284271	1210.55399	-0.18247	-0.00011063	1.9506	0.0011826	1.7681	0.001072	606.2860590486061	51.513	0.55834	51.513	51.27	51.829	0					20	10	3	0	0	0	0.17899	1	18291	18291		74.2	19.426	1	4002200			24461	7302	17743	17871	23958	23958					-0.04286563053392456
KELDPTNMTY	10	Unmodified	_KELDPTNMTY_					0	0	0		nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1	nc|ENSG00000168439|P31948-3|STIP1	nc|ENSG00000168439|P31948-3|STIP1	MULTI-MSMS	A375_MHC_IP_R2	2	606.6884765625	2	606.284271	1210.55399	-0.5009	-0.00030369	1.1563	0.00070106	0.65542	0.00039737	606.2855977488307	50.936	0.70747	51.69	51.26	51.968	0.75406					22	13	3	0	0	0	0.033253	1	19136	19136		80.676	28.408	1	4667500			24462	7302	17743	17871	23959	23959					-0.04286563053392456
KELDSPFRLY	10	Unmodified	_KELDSPFRLY_					0	0	0		nc|ENSG00000006576|Q8N3S3-4|PHTF2;nc|ENSG00000006576|Q8N3S3-3|PHTF2;nc|ENSG00000006576|Q8N3S3-2|PHTF2;ENSG00000006576|ENST00000416283|PHTF2	nc|ENSG00000006576|Q8N3S3-4|PHTF2	nc|ENSG00000006576|Q8N3S3-4|PHTF2	MULTI-MSMS	A375_MHC_IP_R1	1	423.6275939941406	3	423.227556	1266.66084	0.17501	7.4067E-05	0.11309	4.7862E-05	0.28809	0.00012193	423.2275908474467	71.934	0.55511	71.934	71.665	72.22	0					23	10	3	0	0	0	0.19699	1	26167	26167		36.395	25.496	1	2712200			24463	919	17744	17872	23960	23960					0.03817355223281993
KELDSPFRLY	10	Unmodified	_KELDSPFRLY_					0	0	0		nc|ENSG00000006576|Q8N3S3-4|PHTF2;nc|ENSG00000006576|Q8N3S3-3|PHTF2;nc|ENSG00000006576|Q8N3S3-2|PHTF2;ENSG00000006576|ENST00000416283|PHTF2	nc|ENSG00000006576|Q8N3S3-4|PHTF2	nc|ENSG00000006576|Q8N3S3-4|PHTF2	MULTI-MSMS	A375_MHC_IP_R1	1	634.7379150390625	2	634.337695	1266.66084	-0.43027	-0.00027294	-0.12804	-8.1219E-05	-0.55831	-0.00035416	634.3375382230711	71.909	0.40425	71.909	71.765	72.169	0					10	7	2	0	0	0	0.019617	1	26169	26169		85.764	47.589	1	2371400			24464	919	17744	17872	23961	23961					0.03817355223281993
KELDSPFRLY	10	Unmodified	_KELDSPFRLY_					0	0	0		nc|ENSG00000006576|Q8N3S3-4|PHTF2;nc|ENSG00000006576|Q8N3S3-3|PHTF2;nc|ENSG00000006576|Q8N3S3-2|PHTF2;ENSG00000006576|ENST00000416283|PHTF2	nc|ENSG00000006576|Q8N3S3-4|PHTF2	nc|ENSG00000006576|Q8N3S3-4|PHTF2	MULTI-MSMS	A375_MHC_IP_R2	2	423.6274108886719	3	423.227556	1266.66084	-0.31115	-0.00013169	-0.080577	-3.4102E-05	-0.39173	-0.00016579	423.227497709007	71.17	0.60813	71.904	71.605	72.213	0.73421					17	11	2	0	0	0	0.1298	1	27000	27000		50.13	39.231	1	4042800			24465	919	17744	17872	23962	23962					0.03817355223281993
KELDSPFRLY	10	Unmodified	_KELDSPFRLY_					0	0	0		nc|ENSG00000006576|Q8N3S3-4|PHTF2;nc|ENSG00000006576|Q8N3S3-3|PHTF2;nc|ENSG00000006576|Q8N3S3-2|PHTF2;ENSG00000006576|ENST00000416283|PHTF2	nc|ENSG00000006576|Q8N3S3-4|PHTF2	nc|ENSG00000006576|Q8N3S3-4|PHTF2	MULTI-MSMS	A375_MHC_IP_R2	2	634.7373657226562	2	634.337695	1266.66084	-0.96217	-0.00061034	0.72955	0.00046278	-0.23263	-0.00014756	634.3379757395593	71.148	0.50606	71.883	71.605	72.111	0.73421					15	9	3	0	0	0	0.36253	1	27042	27042		36.395	17.033	1	2350300			24466	919	17744	17872	23963	23963					0.03817355223281993
KELDTPFRLY	10	Unmodified	_KELDTPFRLY_					0	0	0		ENSG00000116793|ENST00000369604|PHTF1	ENSG00000116793|ENST00000369604|PHTF1	ENSG00000116793|ENST00000369604|PHTF1	MULTI-MSMS	A375_MHC_IP_R1	1	428.2992248535156	3	427.899439	1280.67649	-0.13617	-5.8266E-05	0.048114	2.0588E-05	-0.088052	-3.7678E-05	427.89933151600405	74.145	0.60777	74.145	73.843	74.451	0					20	11	3	0	0	0	0.27133	1	27028	27028		30.431	23.808	1	1779700			24467	3433	17745	17873	23964	23964					0.047376417403484083
KELDTPFRLY	10	Unmodified	_KELDTPFRLY_					0	0	0		ENSG00000116793|ENST00000369604|PHTF1	ENSG00000116793|ENST00000369604|PHTF1	ENSG00000116793|ENST00000369604|PHTF1	MULTI-MSMS	A375_MHC_IP_R2	2	428.2992858886719	3	427.899439	1280.67649	-0.13946	-5.9673E-05	-0.26	-0.00011125	-0.39946	-0.00017093	427.899364124949	73.342	0.50874	74.078	73.734	74.243	0.73541					18	9	3	0	0	0	0.23431	1	27842	27842		33.821	29.705	1	1881000			24468	3433	17745	17873	23965	23965					0.047376417403484083
KELDYLIKF	9	Unmodified	_KELDYLIKF_					0	0	0		nc|ENSG00000110888|Q6IMN6|CAPRIN2;nc|ENSG00000110888|Q6IMN6-9|CAPRIN2;ENSG00000110888|ENST00000695402|CAPRIN2;nc|ENSG00000110888|Q6IMN6-2|CAPRIN2;nc|ENSG00000110888|Q6IMN6-3|CAPRIN2;nc|ENSG00000110888|Q6IMN6-7|CAPRIN2;nc|ENSG00000110888|Q6IMN6-10|CAPRIN2;nc|ENSG00000110888|Q6IMN6-6|CAPRIN2;ENST00000546129.1_1_12:30887900-30904061:-|nuORF;nc|ENSG00000110888|Q6IMN6-5|CAPRIN2;ENST00000538387.1_1_12:30882254-30888041:-|nuORF	nc|ENSG00000110888|Q6IMN6|CAPRIN2	nc|ENSG00000110888|Q6IMN6|CAPRIN2	MULTI-SECPEP	A375_MHC_IP_R1	1	584.71484375	2	584.834257	1167.65396	-0.37883	-0.00022155	-0.12989	-7.5966E-05	-0.50873	-0.00029752	584.8342112568888	83.967	0.40532	83.967	83.736	84.141	0					12	7	2	0	0	0	0.22619	1	30711	30711		59.052	11.304	1	2561300			24469	2955	17746	17874	23966	23966					0.07684042342725661
KELEDLNKW	9	Unmodified	_KELEDLNKW_					0	0	0		ENSG00000184588|ENST00000341517|PDE4B;nc|ENSG00000184588|Q07343-4|PDE4B;nc|ENSG00000184588|Q07343-2|PDE4B;nc|ENSG00000184588|Q07343-3|PDE4B	ENSG00000184588|ENST00000341517|PDE4B	ENSG00000184588|ENST00000341517|PDE4B	MULTI-SECPEP	A375_MHC_IP_R1	1	392.6082458496094	3	392.208273	1173.60299	0.16324	6.4023E-05	-0.1964	-7.7031E-05	-0.033165	-1.3008E-05	392.20818741455344	46.211	0.60503	46.211	45.89	46.495	0					23	11	3	0	0	0	0.32966	1	16174	16174		49.527	33.789	1	4783100			24470	8596	17747	17875	23967	23967					0.023130932978574492
KELEDLNKW	9	Unmodified	_KELEDLNKW_					0	0	0		ENSG00000184588|ENST00000341517|PDE4B;nc|ENSG00000184588|Q07343-4|PDE4B;nc|ENSG00000184588|Q07343-2|PDE4B;nc|ENSG00000184588|Q07343-3|PDE4B	ENSG00000184588|ENST00000341517|PDE4B	ENSG00000184588|ENST00000341517|PDE4B	MULTI-SECPEP	A375_MHC_IP_R1	1	588.2085571289062	2	587.808771	1173.60299	-0.23723	-0.00013944	0.1096	6.4426E-05	-0.12762	-7.5018E-05	587.8088163461293	46.138	0.45539	46.138	45.89	46.345	0					18	8	3	0	0	0	0.023085	1	16178	16178		128.58	84.806	1	4524400			24471	8596	17747	17875	23968	23968					0.023130932978574492
KELEDLNKW	9	Unmodified	_KELEDLNKW_					0	0	0		ENSG00000184588|ENST00000341517|PDE4B;nc|ENSG00000184588|Q07343-4|PDE4B;nc|ENSG00000184588|Q07343-2|PDE4B;nc|ENSG00000184588|Q07343-3|PDE4B	ENSG00000184588|ENST00000341517|PDE4B	ENSG00000184588|ENST00000341517|PDE4B	MULTI-SECPEP	A375_MHC_IP_R2	2	392.6081237792969	3	392.208273	1173.60299	-0.24314	-9.5363E-05	0.077021	3.0208E-05	-0.16612	-6.5155E-05	392.2083029101449	45.359	0.60612	46.124	45.846	46.453	0.76519					24	11	3	0	0	0	0.23313	1	16937	16937		49.527	25.737	1	5478300			24472	8596	17747	17875	23969	23969					0.023130932978574492
KELEDLNKW	9	Unmodified	_KELEDLNKW_					0	0	0		ENSG00000184588|ENST00000341517|PDE4B;nc|ENSG00000184588|Q07343-4|PDE4B;nc|ENSG00000184588|Q07343-2|PDE4B;nc|ENSG00000184588|Q07343-3|PDE4B	ENSG00000184588|ENST00000341517|PDE4B	ENSG00000184588|ENST00000341517|PDE4B	MULTI-SECPEP	A375_MHC_IP_R2	2	588.208740234375	2	587.808771	1173.60299	-0.62178	-0.00036549	0.34191	0.00020098	-0.27987	-0.00016451	587.8089822729879	45.359	0.50654	46.124	45.796	46.303	0.76519					19	9	3	0	0	0	0.01101	1	16958	16958		150.62	103.02	1	5383900			24473	8596	17747	17875	23970	23970					0.023130932978574492
KELEDVNKW	9	Unmodified	_KELEDVNKW_					0	0	0		ENSG00000113448|ENST00000340635|PDE4D;nc|ENSG00000113448|Q08499-5|PDE4D;nc|ENSG00000113448|Q08499-8|PDE4D;nc|ENSG00000113448|Q08499-4|PDE4D;nc|ENSG00000113448|Q08499-3|PDE4D;nc|ENSG00000113448|Q08499-2|PDE4D;nc|ENSG00000113448|Q08499-10|PDE4D;nc|ENSG00000113448|Q08499-9|PDE4D;nc|ENSG00000113448|Q08499-6|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D	ENSG00000113448|ENST00000340635|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D	ENSG00000113448|ENST00000340635|PDE4D	MULTI-MSMS	A375_MHC_IP_R1	1	581.2009887695312	2	580.800946	1159.58734	-0.075894	-4.4079E-05	0.17906	0.000104	0.10317	5.9922E-05	580.8010296557575	35.294	0.56107	35.294	35.064	35.625	0					23	10	3	0	0	0	1.6535E-17	1	11712	11712		243.33	154.37	1	11076000			24474	3152;14554	17748	17876	23971	23971					0.013928067808137712
KELEDVNKW	9	Unmodified	_KELEDVNKW_					0	0	0		ENSG00000113448|ENST00000340635|PDE4D;nc|ENSG00000113448|Q08499-5|PDE4D;nc|ENSG00000113448|Q08499-8|PDE4D;nc|ENSG00000113448|Q08499-4|PDE4D;nc|ENSG00000113448|Q08499-3|PDE4D;nc|ENSG00000113448|Q08499-2|PDE4D;nc|ENSG00000113448|Q08499-10|PDE4D;nc|ENSG00000113448|Q08499-9|PDE4D;nc|ENSG00000113448|Q08499-6|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D	ENSG00000113448|ENST00000340635|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D	ENSG00000113448|ENST00000340635|PDE4D	MULTI-MSMS	A375_MHC_IP_R1	1	387.9363708496094	3	387.536389	1159.58734	0.35359	0.00013703	0.077149	2.9898E-05	0.43074	0.00016693	387.53633088309414	35.298	0.50899	35.298	35.013	35.522	0					26	9	4	0	0	0	0.035419	1	11733	11733		57.108	32.226	1	10572000			24475	3152;14554	17748	17876	23972	23972					0.013928067808137712
KELEDVNKW	9	Unmodified	_KELEDVNKW_					0	0	0		ENSG00000113448|ENST00000340635|PDE4D;nc|ENSG00000113448|Q08499-5|PDE4D;nc|ENSG00000113448|Q08499-8|PDE4D;nc|ENSG00000113448|Q08499-4|PDE4D;nc|ENSG00000113448|Q08499-3|PDE4D;nc|ENSG00000113448|Q08499-2|PDE4D;nc|ENSG00000113448|Q08499-10|PDE4D;nc|ENSG00000113448|Q08499-9|PDE4D;nc|ENSG00000113448|Q08499-6|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D	ENSG00000113448|ENST00000340635|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D	ENSG00000113448|ENST00000340635|PDE4D	MULTI-MSMS	A375_MHC_IP_R2	2	387.9362487792969	3	387.536389	1159.58734	-0.35039	-0.00013579	-0.069261	-2.6841E-05	-0.41965	-0.00016263	387.53637398406124	34.549	0.60926	35.305	35.06	35.669	0.75545					28	11	3	0	0	0	0.0083527	1	12450	12450		108.26	62.24	1	12015000			24476	3152;14554	17748	17876	23973	23973					0.013928067808137712
KELEDVNKW	9	Unmodified	_KELEDVNKW_					0	0	0		ENSG00000113448|ENST00000340635|PDE4D;nc|ENSG00000113448|Q08499-5|PDE4D;nc|ENSG00000113448|Q08499-8|PDE4D;nc|ENSG00000113448|Q08499-4|PDE4D;nc|ENSG00000113448|Q08499-3|PDE4D;nc|ENSG00000113448|Q08499-2|PDE4D;nc|ENSG00000113448|Q08499-10|PDE4D;nc|ENSG00000113448|Q08499-9|PDE4D;nc|ENSG00000113448|Q08499-6|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D	ENSG00000113448|ENST00000340635|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D	ENSG00000113448|ENST00000340635|PDE4D	MULTI-MSMS	A375_MHC_IP_R2	2	581.2003784179688	2	580.800946	1159.58734	-0.52005	-0.00030205	-0.65278	-0.00037914	-1.1728	-0.00068119	580.8008809268975	34.569	0.55885	35.329	35.064	35.623	0.75977					32	10	4	0	0	0	1.2018000000000001E-35	1	12452	12452		275.44	175.64	1	11035000			24477	3152;14554	17748	17876	23974	23974					0.013928067808137712
KELEFLKKL	9	Unmodified	_KELEFLKKL_					0	0	0		ENST00000463634.6_1_6:4041126-4056780:+|nuORF;ENSG00000112739|ENST00000337659|PRPF4B	ENST00000463634.6_1_6:4041126-4056780:+|nuORF	ENST00000463634.6_1_6:4041126-4056780:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	383.6407775878906	3	383.241025	1146.70125	-0.31927	-0.00012236	0.088824	3.4041E-05	-0.23045	-8.8316E-05	383.24095567110965	51.529	0.50777	52.281	51.966	52.473	0.75225					22	9	3	0	0	0	0.010047	1	19388	19388		125.18	13.872	1	5937900			24478	3108	17749	17877	23975	23975					0.13376321613714026
KELEKDVNP	9	Unmodified	_KELEKDVNP_					0	0	0			REV__tr|U7SJE6|U7SJE6_FUSNUPhosphomethylpyrimidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiCPE=3SV=1	REV__tr|U7SJE6|U7SJE6_FUSNUPhosphomethylpyrimidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiCPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	358.3131408691406	3	357.860873	1070.56079	-0.35763	-0.00012798	1.3389	0.00047914	0.98126	0.00035115	357.8611842845516	29.587	0.54582	29.587	29.302	29.848	0					24	10	4	0	0	0	0.11638	1	9220	9220		47.732	5.4195	1	54293000	+		24479	28230	17750	17878	23976	23976					0.028331178894632103
KELELAHRY	9	Unmodified	_KELELAHRY_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-SECPEP	A375_MHC_IP_R1	1	387.2803955078125	3	386.880379	1157.61931	-0.018193	-7.0383E-06	0.029863	1.1553E-05	0.011671	4.5151E-06	386.8803579364812	23.863	0.76041	23.863	23.737	24.498	0					18	14	2	0	0	0	0.02531	1	6647	6647		105.35	44.255	1	19380000			24480	9310	17751	17879	23977	23977					0.046802192546238075
KELELAHRY	9	Unmodified	_KELELAHRY_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-SECPEP	A375_MHC_IP_R2	2	387.2803955078125	3	386.880379	1157.61931	-0.48014	-0.00018576	0.31402	0.00012149	-0.16612	-6.427E-05	386.8805299797242	23.067	0.45927	23.698	23.368	23.828	0.63014					21	8	4	0	0	0	0.091861	1	7358	7358		79.427	26.11	1	13126000			24481	9310	17751	17879	23978	23978					0.046802192546238075
KELERIYQER	10	Unmodified	_KELERIYQER_					0	0	0		tr|U7T5X5|U7T5X5_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00007PE=3SV=1	tr|U7T5X5|U7T5X5_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00007PE=3SV=1	tr|U7T5X5|U7T5X5_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00007PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	455.98345947265625	3	455.249131	1362.72556	0.027395	1.2472E-05	-0.15756	-7.1729E-05	-0.13016	-5.9257E-05	455.2487757801466	21.631	0.71236	21.631	21.199	21.911	0					36	13	5	0	0	0	0.59998	1	5701	5701		20.871	2.7496	1	4484500			24482	30036	17752	17880	23979	23979					0.058709300292548505
KELERIYQER	10	Unmodified	_KELERIYQER_					0	0	0		tr|U7T5X5|U7T5X5_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00007PE=3SV=1	tr|U7T5X5|U7T5X5_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00007PE=3SV=1	tr|U7T5X5|U7T5X5_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00007PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	455.249131	1362.72556	0.027395	1.2472E-05	-0.15756	-7.1729E-05	-0.13016	-5.9257E-05	455.2487757801466	21.631	0.71236	21.631	21.199	21.911	0	0	0	NaN	20.871	36	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4484500			24483	30036	17752	17880							0.058709300292548505
KELERLIQPSF	11	Unmodified	_KELERLIQPSF_					0	0	0		ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	MULTI-MSMS	A375_MHC_IP_R2	2	453.95379638671875	3	453.925877	1358.7558	-0.282	-0.00012801	-0.64505	-0.0002928	-0.92705	-0.00042081	453.9257133400108	40.06	0.20296	40.834	40.727	40.93	0.77451					5	3	2	0	0	0	0.73064	1	14781	14781		8.2864	2.0521	1	510620			24484	6153	17753	17881	23980	23980					0.09077288694470553
KELERLIQPSF	11	Unmodified	_KELERLIQPSF_					0	0	0		ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	MULTI-MATCH	A375_MHC_IP_R1	1		3	453.925877	1358.7558	-0.27602	-0.00012529	-0.87012	-0.00039497	-1.1461	-0.00052026	453.92580654523476	40.888	0.30081	40.888	40.762	41.063	0	0.026648	-0.00025439	NaN	8.2864	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1474600			24485	6153	17753	17881							0.09077288694470553
KELESIKETY	10	Unmodified	_KELESIKETY_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;FMNL3|p.F788Lfs*19|1|0.06|ENSG00000161791|chr12:49649280-49649281|-/TTCTGCTTTT|frameshift_variant	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MSMS	A375_MHC_IP_R1	1	414.2870788574219	3	413.887088	1238.63943	-0.089883	-3.7202E-05	-0.43762	-0.00018112	-0.5275	-0.00021833	413.8870153808926	29.127	0.45786	29.127	28.895	29.353	0					21	8	5	0	0	0	0.0046488	1	9082	9082		96.24	53.404	1	6768900			24486	6485	17754	17882	23981	23981					0.029659254039188454
KELESIKETY	10	Unmodified	_KELESIKETY_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;FMNL3|p.F788Lfs*19|1|0.06|ENSG00000161791|chr12:49649280-49649281|-/TTCTGCTTTT|frameshift_variant	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-SECPEP	A375_MHC_IP_R1	1	620.9868774414062	2	620.326993	1238.63943	-0.81632	-0.00050639	0.2208	0.00013697	-0.59552	-0.00036942	620.3269970073386	29.153	0.3575	29.153	28.945	29.302	0					15	6	3	0	0	0	0.134	1	9072	9072		76.416	34.104	1	7274700			24487	6485	17754	17882	23982	23982					0.029659254039188454
KELESIKETY	10	Unmodified	_KELESIKETY_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;FMNL3|p.F788Lfs*19|1|0.06|ENSG00000161791|chr12:49649280-49649281|-/TTCTGCTTTT|frameshift_variant	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MSMS	A375_MHC_IP_R2	2	414.2869873046875	3	413.887088	1238.63943	-0.44225	-0.00018304	0.13819	5.7193E-05	-0.30406	-0.00012585	413.88712207185756	28.49	0.3047	29.169	28.909	29.214	0.67857					11	5	3	0	0	0	0.0046488	2	9818	9793;9818		96.24	53.404	1	5581200			24488	6485	17754	17882	23983;23984	23984					0.029659254039188454
KELESIKETY	10	Unmodified	_KELESIKETY_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;FMNL3|p.F788Lfs*19|1|0.06|ENSG00000161791|chr12:49649280-49649281|-/TTCTGCTTTT|frameshift_variant	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-SECPEP	A375_MHC_IP_R2	2	620.7265625	2	620.326993	1238.63943	-1.1521	-0.00071466	0.62577	0.00038818	-0.52631	-0.00032649	620.3272021846593	28.44	0.25393	29.118	28.96	29.214	0.67857					10	4	3	0	0	0	0.098731	1	9819	9819		82.445	34.713	1	8905500			24489	6485	17754	17882	23985	23985					0.029659254039188454
KELFEGVQKW	10	Unmodified	_KELFEGVQKW_					0	0	0		nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-2|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1	nc|ENSG00000198901|O43663-3|PRC1	nc|ENSG00000198901|O43663-3|PRC1	MULTI-MSMS	A375_MHC_IP_R1	1	632.7407836914062	2	632.340238	1262.66592	-0.63542	-0.0004018	0.67144	0.00042458	0.03602	2.2777E-05	632.340616154058	60.146	0.50908	60.146	59.905	60.414	0					20	9	3	0	0	0	0.00090784	1	21647	21647		176.41	113.83	1	4946100			24490	9363	17755	17883	23986	23986					0.045096590858975105
KELFEGVQKW	10	Unmodified	_KELFEGVQKW_					0	0	0		nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-2|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1	nc|ENSG00000198901|O43663-3|PRC1	nc|ENSG00000198901|O43663-3|PRC1	MULTI-SECPEP	A375_MHC_IP_R1	1	422.2962646484375	3	421.895917	1262.66592	0.014777	6.2344E-06	0.28384	0.00011975	0.29861	0.00012598	421.89607334405065	60.134	0.66101	60.134	59.905	60.566	0					28	12	3	0	0	0	0.37302	1	21649	21649		35.08	27.651	1	3087500			24491	9363	17755	17883	23987	23987					0.045096590858975105
KELFEGVQKW	10	Unmodified	_KELFEGVQKW_					0	0	0		nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-2|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1	nc|ENSG00000198901|O43663-3|PRC1	nc|ENSG00000198901|O43663-3|PRC1	MULTI-MSMS	A375_MHC_IP_R2	2	422.2958068847656	3	421.895917	1262.66592	-0.52485	-0.00022143	-0.0045745	-1.93E-06	-0.52943	-0.00022336	421.89590226430073	59.321	0.91148	60.068	59.742	60.653	0.74714					34	17	4	0	0	0	0.055666	1	22440	22440		74.306	58.768	1	3346300			24492	9363	17755	17883	23988	23988					0.045096590858975105
KELFEGVQKW	10	Unmodified	_KELFEGVQKW_					0	0	0		nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-2|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1	nc|ENSG00000198901|O43663-3|PRC1	nc|ENSG00000198901|O43663-3|PRC1	MULTI-MSMS	A375_MHC_IP_R2	2	632.7398071289062	2	632.340238	1262.66592	-1.2098	-0.00076503	0.43661	0.00027609	-0.77323	-0.00048894	632.3401898253218	59.361	0.45396	60.108	59.845	60.299	0.74714					21	8	3	0	0	0	0.011476	1	22443	22443		142.94	90.672	1	3775200			24493	9363	17755	17883	23989	23989					0.045096590858975105
KELFEKYR	8	Unmodified	_KELFEKYR_					0	0	0			REV__ENST00000469535.5_1_1:207941017-207941188:+|nuORF	REV__ENST00000469535.5_1_1:207941017-207941188:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	371.9415588378906	3	371.541475	1111.60259	0.31725	0.00011787	-0.31028	-0.00011528	0.0069697	2.5895E-06	371.5413946639145	57.802	0.50593	57.802	57.518	58.024	0					14	9	2	0	0	0	0.77851	1	20802	20802		0.35063	0	1	1576900	+		24494	25094	17756	17884	23990	23990					0.05125718368640264
KELFYFLWLRL	11	Unmodified	_KELFYFLWLRL_					0	0	0			REV__ENST00000480769.5_1_1:185266844-185267009:-|nuORF	REV__ENST00000480769.5_1_1:185266844-185267009:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	510.68231201171875	3	509.962262	1526.86496	-0.7132	-0.00036371	-0.1198	-6.1091E-05	-0.833	-0.0004248	509.962555727352	134.85	0.35603	134.85	134.73	135.08	0					10	6	2	0	0	0	1.0015	1	52016	52016		0.40827	0.31342	1	2496600	+		24495	25247	17757	17885	23991	23991					0.12259919384587192
KELFYFLWLRL	11	Unmodified	_KELFYFLWLRL_					0	0	0			REV__ENST00000480769.5_1_1:185266844-185267009:-|nuORF	REV__ENST00000480769.5_1_1:185266844-185267009:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	509.962262	1526.86496	-0.63002	-0.00032128	0.74867	0.00038179	0.11866	6.051E-05	509.96262047982697	134.81	0.45486	134.94	134.8	135.25	0.13899	0.046657	0.00024562	NaN	0.40827	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2266600	+		24496	25247	17757	17885							0.12259919384587192
KELGEGQHFW	10	Unmodified	_KELGEGQHFW_					0	0	0		ENST00000564709.5_1_16:1827100-1828401:-|nuORF;ENSG00000162032|ENST00000566339|SPSB3;ENST00000569380.5_1_16:1827975-1828401:-|nuORF	ENST00000564709.5_1_16:1827100-1828401:-|nuORF	ENST00000564709.5_1_16:1827100-1828401:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	411.26806640625	3	410.86825	1229.58292	0.047403	1.9476E-05	-0.15143	-6.2216E-05	-0.10402	-4.274E-05	410.8681332821857	45.919	0.40295	46.684	46.453	46.855	0.76518					13	7	2	0	0	0	0.32288	1	17176	17176		38.559	21.51	1	3099600			24497	6504	17758	17886	23992	23992					-0.022686576420937854
KELGEGQHFW	10	Unmodified	_KELGEGQHFW_					0	0	0		ENST00000564709.5_1_16:1827100-1828401:-|nuORF;ENSG00000162032|ENST00000566339|SPSB3;ENST00000569380.5_1_16:1827975-1828401:-|nuORF	ENST00000564709.5_1_16:1827100-1828401:-|nuORF	ENST00000564709.5_1_16:1827100-1828401:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	410.86825	1229.58292	-0.064622	-2.6551E-05	0.23671	9.7255E-05	0.17208	7.0704E-05	410.86822737852134	46.715	0.50734	46.715	46.444	46.952	0	0.015322	0.00027185	NaN	38.559	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2493600			24498	6504	17758	17886							-0.022686576420937854
KELIDSREI	9	Unmodified	_KELIDSREI_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.R7429Ifs*19|1|0.07|ENSG00000131018|chr6:152214911-152214966|TCTTTCTGTAGTCTGAGAGGAGATCAGAGACCAATGGCGGTTCAGATTCTGCATTC/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-10|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	A375_MHC_IP_R1	1	367.6328125	3	368.208273	1101.60299	0.2679	9.8642E-05	-0.73871	-0.000272	-0.47081	-0.00017336	368.2070917694646	64.062	0.30365	64.062	63.837	64.141	0					6	5	2	0	0	0	0.80713	1	23114	23114		2.086	0	1	451990			24499	4300	17759	17887	23993	23993					0.05625093297862804
KELITQVKR	9	Unmodified	_KELITQVKR_					0	0	0			REV__ENSG00000151929|ENST00000369085|BAG3	REV__ENSG00000151929|ENST00000369085|BAG3	MULTI-MSMS	A375_MHC_IP_R2	2	372.6365966796875	3	372.236274	1113.68699	0.10902	4.058E-05	0.28298	0.00010534	0.392	0.00014591	372.2364186281326	24.409	1.0164	25.053	24.857	25.873	0.64368					26	19	2	0	0	0	0.7235	1	8067	8067		4.897	0.70751	1	5508300	+		24500	19784	17760	17888	23994	23994					0.1346966918540602
KELKKIKKTLK	11	Unmodified	_KELKKIKKTLK_					0	0	0			REV__ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	REV__ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	MSMS	A375_MHC_IP_R2	2	678.7359619140625	2	678.96868	1355.92281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.207	1	82.95	82.45	83.45	0.74293								0	0	0	0.16312	1	31227	31227		2.4985	1.0166	1		+		24501	24848	17761	17889	23995	23995					0.2590818131002379
KELKKIKKTLK	11	Unmodified	_KELKKIKKTLK_					0	0	0			REV__ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	REV__ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	MSMS	A375_MHC_IP_R2	2	678.7413940429688	2	678.96868	1355.92281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.297	1	83.04	82.54	83.54	0.74293								0	0	0	0.16355	1	31261	31261		0.23584	0.23584	1		+		24502	24848	17761	17889	23996	23996					0.2590818131002379
KELKKIRVKY	10	Unmodified	_KELKKIRVKY_					0	0	0		ENSG00000164252|ENST00000312916|AGGF1	ENSG00000164252|ENST00000312916|AGGF1	ENSG00000164252|ENST00000312916|AGGF1	MSMS	A375_MHC_IP_R2	2	652.995849609375	2	652.924272	1303.83399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.94	1	102.7	102.2	103.2	0.76428								0	0	0	0.15596	1	38634	38634		1.4819	0.15237	1				24503	6809	17762	17890	23997	23997					0.19422766070374564
KELKKQIEPRE	11	Unmodified	_KELKKQIEPRE_					0	0	0		ENSG00000243710|ENST00000372492|CFAP57	ENSG00000243710|ENST00000372492|CFAP57	ENSG00000243710|ENST00000372492|CFAP57	MULTI-MSMS	A375_MHC_IP_R1	1	699.807861328125	2	699.409183	1396.80381	-0.86527	-0.00060518	-0.50017	-0.00034982	-1.3654	-0.000955	699.4087162786221	132.94	5.7679	132.94	132.54	138.31	0					321	112	6	0	0	0	0.73672	1	51495	51495		2.4985	1.3051	1	631940000			24504	9813	17763	17891	23998	23998					0.12128362614475918
KELLATAIGRG	11	Unmodified	_KELLATAIGRG_					0	0	0			REV__tr|U7SYX3|U7SYX3_FUSNURibosomal-protein-alanineN-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00792PE=4SV=1	REV__tr|U7SYX3|U7SYX3_FUSNURibosomal-protein-alanineN-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00792PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	565.3927001953125	2	564.840405	1127.66626	-0.33614	-0.00018987	2.8729	0.0016227	2.5367	0.0014328	564.8423927505414	55.93	0.45691	55.93	55.635	56.092	0					14	8	2	0	0	0	0.51633	1	19909	19909		29.841	2.9569	1	1474900	+		24505	28635	17764	17892	23999	23999					0.1075307880573746
KELLFFKVA	9	Unmodified	_KELLFFKVA_					0	0	0			REV__AADACL2|p.L173P|1|0.97|ENSG00000197953|chr3:151745595-151745595|T/C|missense_variant	REV__AADACL2|p.L173P|1|0.97|ENSG00000197953|chr3:151745595-151745595|T/C|missense_variant	MSMS	A375_MHC_IP_R2	2	365.6101379394531	3	365.558466	1093.65357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.703	1	64.443	63.943	64.943	0.74022								0	0	0	0.15486	1	24155	24155		6.1918	1.1443	1		+		24506	15278	17765	17893	24000	24000					0.11048667413524527
KELLHKLHL	9	Unmodified	_KELLHKLHL_					0	0	0		ENSG00000144136|ENST00000272542|SLC20A1;ENST00000490674.1_1_2:113416785-113418150:+|nuORF	ENSG00000144136|ENST00000272542|SLC20A1	ENSG00000144136|ENST00000272542|SLC20A1	MULTI-MSMS	A375_MHC_IP_R1	1	378.3083190917969	3	377.572998	1129.69716	0.022067	8.3319E-06	1.3381	0.00050524	1.3602	0.00051357	377.5730530066848	41.589	0.81556	41.589	41.317	42.132	0					37	15	4	0	0	0	0.64971	1	14430	14430		11.495	4.8643	1	3859600			24507	5466	17766	17894	24001	24001					0.13750276910650427
KELLQQLREA	10	Unmodified	_KELLQQLREA_					0	0	0		ENST00000485807.1_1_1:227920095-227920875:-|nuORF;nc|ENSG00000081692|Q9H9V9-2|JMJD4;ENSG00000081692|ENST00000620518|JMJD4;nc|ENSG00000081692|Q9H9V9-1|JMJD4	ENST00000485807.1_1_1:227920095-227920875:-|nuORF	ENST00000485807.1_1_1:227920095-227920875:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	614.7864379882812	2	614.356419	1226.69829	-0.39135	-0.00024043	-0.4706	-0.00028912	-0.86195	-0.00052955	614.3560521575944	149.65	1.6195	149.67	148.39	150.01	0.01825					113	60	2	0	0	0	0.72078	1	57888	57888		2.9952	1.3426	1	362470			24508	1741	17767	17895	24002	24002					0.09400446488916714
KELLQTELSGF	11	Unmodified	_KELLQTELSGF_					0	0	0		ENSG00000160678|ENST00000292169|S100A1	ENSG00000160678|ENST00000292169|S100A1	ENSG00000160678|ENST00000292169|S100A1	MULTI-SECPEP	A375_MHC_IP_R1	1	422.9926452636719	3	422.230966	1263.67107	0.072842	3.0756E-05	0.19277	8.1393E-05	0.26561	0.00011215	422.23092233601653	56.857	0.35733	56.857	56.701	57.059	0					11	6	2	0	0	0	0.99732	1	20345	20345		2.2527	2.2527	1	1203600			24509	6429	17768	17896	24003	24003					0.049779181578287535
KELLQTELSGF	11	Unmodified	_KELLQTELSGF_					0	0	0		ENSG00000160678|ENST00000292169|S100A1	ENSG00000160678|ENST00000292169|S100A1	ENSG00000160678|ENST00000292169|S100A1	MULTI-MATCH	A375_MHC_IP_R2	2		3	422.230966	1263.67107	-0.33847	-0.00014291	-0.07162	-3.024E-05	-0.41009	-0.00017315	422.23075935070085	56.072	0.35841	56.822	56.642	57	0.75015	-0.017223	-0.00020047	NaN	2.2527	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1189800			24510	6429	17768	17896							0.049779181578287535
KELLTKILSR	10	Unmodified	_KELLTKILSR_					0	0	0			REV__nc|ENSG00000148482|Q504Y0-2|SLC39A12	REV__nc|ENSG00000148482|Q504Y0-2|SLC39A12	MULTI-MSMS	A375_MHC_IP_R2	2	400.9400939941406	3	400.927329	1199.76016	-0.63883	-0.00025612	0.5997	0.00024044	-0.039125	-1.5686E-05	400.92754724545136	36.917	0.45668	37.688	37.41	37.867	0.7709					28	8	4	0	0	0	0.70925	1	13387	13387		4.7159	0	1	17668000	+		24511	19634	17769	17897	24004	24004					0.16826797908015578
KELMRQEPN	9	Unmodified	_KELMRQEPN_					0	0	0			REV__nc|ENSG00000107554|Q6XZF7-2|DNMBP	REV__nc|ENSG00000107554|Q6XZF7-2|DNMBP	MSMS	A375_MHC_IP_R2	2	572.7020263671875	2	572.792598	1143.57064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.151	1	62.893	62.393	63.393	0.74263								0	0	0	0.14851	1	23557	23557		24.021	0	1		+		24512	17488	17770	17898	24005	24005					0.004599826232151827
KELPVNAQNY	10	Unmodified	_KELPVNAQNY_					0	0	0		ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	MULTI-MSMS	A375_MHC_IP_R1	1	588.7064819335938	2	588.306395	1174.59824	-0.4349	-0.00025585	0.68809	0.00040481	0.2532	0.00014896	588.3066008259805	36.947	0.35125	36.947	36.745	37.096	0					16	6	3	0	0	0	2.7733E-05	1	12412	12412		159.1	99.027	1	7993700			24513	1133	17771	17899	24006	24006					0.01792209155087221
KELPVNAQNY	10	Unmodified	_KELPVNAQNY_					0	0	0		ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	MULTI-MSMS	A375_MHC_IP_R2	2	588.7061157226562	2	588.306395	1174.59824	-0.68303	-0.00040183	0.35157	0.00020683	-0.33146	-0.000195	588.306616386137	36.166	0.40865	36.937	36.698	37.106	0.7709					19	7	3	0	0	0	8.981E-06	1	13146	13146		192.32	132.25	1	7269700			24514	1133	17771	17899	24007	24007					0.01792209155087221
KELQNTINQRK	11	Unmodified	_KELQNTINQRK_					0	0	0			REV__ENSG00000016864|ENST00000266014|GLT8D1	REV__ENSG00000016864|ENST00000266014|GLT8D1	MSMS	A375_MHC_IP_R2	2	686.3079223632812	2	686.388782	1370.76301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.28	1	133.44	132.94	133.94	0.16487								0	0	0	0.16273	1	52429	52429		4.5289	1.7937	1		+		24515	16252	17772	17900	24008	24008					0.09246021294870843
KELRLQRDDF	10	Unmodified	_KELRLQRDDF_					0	0	0		ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	MULTI-MSMS	A375_MHC_IP_R1	1	440.97357177734375	3	440.573726	1318.69935	-0.085223	-3.7547E-05	-0.13504	-5.9495E-05	-0.22026	-9.7042E-05	440.5735510902513	25.229	0.61074	25.229	25.053	25.664	0					35	11	4	0	0	0	0.29801	1	7324	7324		29.281	4.1261	1	64449000			24516	7584	17773	17901	24009	24009					0.05274660857799063
KELRLQRDDF	10	Unmodified	_KELRLQRDDF_					0	0	0		ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	MULTI-MSMS	A375_MHC_IP_R2	2	440.9731750488281	3	440.573726	1318.69935	-0.69845	-0.00030772	0.13879	6.1147E-05	-0.55966	-0.00024657	440.57363870934637	24.594	0.6591	25.237	25.06	25.719	0.64368					39	12	4	0	0	0	0.29801	1	8104	8104		29.281	4.1261	1	69215000			24517	7584	17773	17901	24010	24010					0.05274660857799063
KELSIAIRGY	10	Unmodified	_KELSIAIRGY_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	A375_MHC_IP_R1	1	384.2925109863281	3	383.892396	1148.65536	0.36368	0.00013961	-0.15286	-5.8682E-05	0.21082	8.0932E-05	383.8923623677899	50.157	0.66534	50.157	49.845	50.51	0					21	9	3	0	0	0	0.2729	1	17745	17745		35.996	21.039	1	4930600			24518	9866	17774	17902	24011	24011					0.0869767643148407
KELSIAIRGY	10	Unmodified	_KELSIAIRGY_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	A375_MHC_IP_R1	1	575.7349853515625	2	575.334956	1148.65536	-0.12097	-6.96E-05	-0.022326	-1.2845E-05	-0.1433	-8.2445E-05	575.334938301705	50.126	0.51162	50.126	49.845	50.357	0					22	9	3	0	0	0	0.025172	1	17737	17737		105.35	38.264	1	4728500			24519	9866	17774	17902	24012	24012					0.0869767643148407
KELSIAIRGY	10	Unmodified	_KELSIAIRGY_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	A375_MHC_IP_R2	2	384.29248046875	3	383.892396	1148.65536	-0.34777	-0.00013351	0.30755	0.00011807	-0.040215	-1.5438E-05	383.8924298868058	49.276	0.6576	50.033	49.69	50.348	0.75737					33	12	4	0	0	0	0.4546	1	18495	18495		38.559	18.572	1	6317200			24520	9866	17774	17902	24013	24013					0.0869767643148407
KELSIAIRGY	10	Unmodified	_KELSIAIRGY_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	A375_MHC_IP_R2	2	575.73486328125	2	575.334956	1148.65536	-0.43295	-0.00024909	-0.39831	-0.00022916	-0.83126	-0.00047825	575.334751936884	49.263	0.55622	50.021	49.741	50.297	0.75737					24	10	3	0	0	0	0.097312	1	18502	18502		88.364	29.311	1	5701200			24521	9866	17774	17902	24014	24014					0.0869767643148407
KELSSLKY	8	Unmodified	_KELSSLKY_					0	0	0			REV__ENST00000473253.5_1_3:174581768-175298945:+|nuORF	REV__ENST00000473253.5_1_3:174581768-175298945:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	484.657958984375	2	484.276575	966.538597	-0.77664	-0.00037611	-1.9961	-0.00096665	-2.7727	-0.0013428	484.275555632907	37.762	0.4093	38.536	38.227	38.636	0.77451					10	7	2	0	0	0	0.92636	1	13726	13726		16.942	4.4107	1	2408500	+		24522	21468	17775	17903	24015	24015					0.05398938211715176
KELVELSQASP	11	Unmodified	_KELVELSQASP_					0	0	0		ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	MSMS	A375_MHC_IP_R1	1	400.94012451171875	3	400.887199	1199.63977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.566	1	37.566	37.066	38.066	0								0	0	0	0.16232	1	12674	12674		6.6235	0.43161	1				24523	8298	17776	17904	24016	24016					0.04793345123744075
KELYQMYWARW	11	Unmodified	_KELYQMYWARW_					0	0	0			REV__nc|ENSG00000175727|Q9HAP2-3|MLXIP	REV__nc|ENSG00000175727|Q9HAP2-3|MLXIP	MSMS	A375_MHC_IP_R2	2	787.224853515625	2	787.384654	1572.75475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.16	1	112.89	112.39	113.39	0.72458								0	0	0	0.16312	1	42287	42287		2.4985	2.1915	1		+		24524	21362	17777	17905	24017	24017					-0.008712489461004225
KELYVNLTNNR	11	Unmodified	_KELYVNLTNNR_					0	0	0			REV__ENSG00000160345|ENST00000429260|PIERCE1	REV__ENSG00000160345|ENST00000429260|PIERCE1	MULTI-MSMS	A375_MHC_IP_R2	2	455.6487121582031	3	455.249131	1362.72556	-0.52702	-0.00023993	-0.20925	-9.526E-05	-0.73627	-0.00033519	455.2489737902963	20.036	0.55794	20.646	20.349	20.907	0.61029					32	10	4	0	0	0	0.52331	1	6180	6180		29.291	9.3045	1	4481300	+		24525	20164	17778	17906	24018	24018					0.05870930029300325
KEMEQFVKKY	10	Oxidation (M)	_KEM(Oxidation (M))EQFVKKY_		KEM(1)EQFVKKY		KEM(76)EQFVKKY	0	0	1		nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES	nc|ENSG00000135269|Q9UGI8-2|TES	nc|ENSG00000135269|Q9UGI8-2|TES	MULTI-MSMS	A375_MHC_IP_R1	1	449.63226318359375	3	449.232201	1344.67477	0.12957	5.8209E-05	-0.37141	-0.00016685	-0.24184	-0.00010864	449.23204577518857	21.37	1.5754	21.37	21.098	22.673	0					55	30	4	0	0	0	0.049466	2	5616	5598;5616		76.068	61.85	1	7477100			24526	4662	17779	17907	24019;24020	24020		245			0.0162226466006814
KEMEQFVKKY	10	Oxidation (M)	_KEM(Oxidation (M))EQFVKKY_		KEM(1)EQFVKKY		KEM(76)EQFVKKY	0	0	1		nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES	nc|ENSG00000135269|Q9UGI8-2|TES	nc|ENSG00000135269|Q9UGI8-2|TES	MULTI-MSMS	A375_MHC_IP_R2	2	449.6321716308594	3	449.232201	1344.67477	-0.64211	-0.00028846	0.071754	3.2234E-05	-0.57036	-0.00025622	449.23232650735906	20.914	0.81073	21.524	21.312	22.123	0.61029					31	15	3	0	0	0	0.049466	1	6537	6537		76.068	65.003	1	5020200			24527	4662	17779	17907	24021	24021		245			0.0162226466006814
KEMEQFVKKY	10	Unmodified	_KEMEQFVKKY_					0	0	0		nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES	nc|ENSG00000135269|Q9UGI8-2|TES	nc|ENSG00000135269|Q9UGI8-2|TES	MULTI-MSMS	A375_MHC_IP_R1	1	444.6346740722656	3	443.900563	1328.67986	-0.21769	-9.6631E-05	-0.31682	-0.00014063	-0.5345	-0.00023727	443.9004198772083	25.639	0.60793	25.639	25.46	26.068	0					39	11	5	0	0	0	0.00093258	1	7516	7516		129.39	79.258	1	33888000			24528	4662	17779	17908	24022	24022					0.028665685226997084
KEMEQFVKKY	10	Unmodified	_KEMEQFVKKY_					0	0	0		nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES	nc|ENSG00000135269|Q9UGI8-2|TES	nc|ENSG00000135269|Q9UGI8-2|TES	MULTI-MSMS	A375_MHC_IP_R2	2	444.3000183105469	3	443.900563	1328.67986	-0.79141	-0.00035131	-0.19809	-8.7933E-05	-0.98951	-0.00043924	443.90055460538576	25.069	0.56217	25.713	25.414	25.976	0.64368					38	10	5	0	0	0	3.0522E-05	1	8270	8270		153.7	89.008	1	22095000			24529	4662	17779	17908	24023	24023					0.028665685226997084
KEMETPLLESP	11	Unmodified	_KEMETPLLESP_					0	0	0			REV__KIF1B|p.P804S|1|0.52|ENSG00000054523|chr1:10323935-10323935|C/T|missense_variant	REV__KIF1B|p.P804S|1|0.52|ENSG00000054523|chr1:10323935-10323935|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	425.61651611328125	3	425.216328	1272.62715	0.055369	2.3544E-05	-0.15423	-6.5583E-05	-0.098864	-4.2039E-05	425.21628501282765	20.767	0.81565	20.767	20.536	21.352	0					53	15	4	0	0	0	0.63737	1	5349	5349		16.275	7.0308	1	19799000	+		24530	26847	17780	17909	24024	24024					0.001745656692492048
KEMETPLLESP	11	Unmodified	_KEMETPLLESP_					0	0	0			REV__KIF1B|p.P804S|1|0.52|ENSG00000054523|chr1:10323935-10323935|C/T|missense_variant	REV__KIF1B|p.P804S|1|0.52|ENSG00000054523|chr1:10323935-10323935|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	425.61651611328125	3	425.216328	1272.62715	0.055369	2.3544E-05	-0.15423	-6.5583E-05	-0.098864	-4.2039E-05	425.21628501282765	20.767	0.81565	20.767	20.536	21.352	0					53	15	4	0	0	0	0.94168	1	5349	5349		16.275	16.275	1	19799000	+		24531	26847	17780	17909	24025	24025					0.001745656692492048
KEMETPLLESP	11	Unmodified	_KEMETPLLESP_					0	0	0			REV__KIF1B|p.P804S|1|0.52|ENSG00000054523|chr1:10323935-10323935|C/T|missense_variant	REV__KIF1B|p.P804S|1|0.52|ENSG00000054523|chr1:10323935-10323935|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	425.61590576171875	3	425.216328	1272.62715	-0.46174	-0.00019634	0.036968	1.5719E-05	-0.42477	-0.00018062	425.2163417904552	19.562	0.7088	20.172	19.841	20.549	0.61029					49	13	5	0	0	0	0.63737	1	5963	5963		16.275	7.9881	1	20427000	+		24532	26847	17780	17909	24026	24026					0.001745656692492048
KEMKKEQLRYW	11	Unmodified	_KEMKKEQLRYW_					0	0	0			REV__ENSG00000168876|ENST00000544612|ANKRD49	REV__ENSG00000168876|ENST00000544612|ANKRD49	MSMS	A375_MHC_IP_R1	1	513.6159057617188	3	513.609783	1537.80752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.369	1	50.369	49.869	50.869	0								0	0	0	0.16334	1	17843	17843		1.3296	0.31607	1		+		24533	20890	17781	17910	24027	24027					0.060127091167260005
KEMLIQNIKN	10	Unmodified	_KEMLIQNIKN_					0	0	0			REV__ENSG00000143624|ENST00000318967|INTS3	REV__ENSG00000143624|ENST00000318967|INTS3	MULTI-MSMS	A375_MHC_IP_R1	1	616.2474365234375	2	615.847373	1229.68019	-0.24316	-0.00014975	0.55025	0.00033887	0.30709	0.00018912	615.8475332209835	105.32	1.2169	105.32	104.79	106.01	0					57	23	3	0	0	0	0.62306	1	38780	38780		27.223	9.0883	1	7762800	+		24534	19374	17782	17911	24028	24028					0.0745398824253698
KEMLPSYHKW	10	Unmodified	_KEMLPSYHKW_					0	0	0		nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	nc|ENSG00000095319|Q5SRE5-2|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-SECPEP	A375_MHC_IP_R2	2	440.62518310546875	3	440.225269	1317.65398	-0.49734	-0.00021894	0.082996	3.6537E-05	-0.41435	-0.00018241	440.22527658322	35.849	0.45837	36.612	36.333	36.792	0.76338					14	8	2	0	0	0	0.81654	1	13056	13056		14.171	11.918	1	3135800			24535	2039	17783	17912	24029	24029					0.007857190710637951
KEMPAVLVF	9	Unmodified	_KEMPAVLVF_					0	0	0		ENSG00000166479|ENST00000299608|TMX3;ENST00000569053.5_1_18:66357168-66367709:-|nuORF	ENSG00000166479|ENST00000299608|TMX3	ENSG00000166479|ENST00000299608|TMX3	MULTI-MSMS	A375_MHC_IP_R1	1	517.6907348632812	2	517.291171	1032.56779	-0.68456	-0.00035412	0.19562	0.00010119	-0.48894	-0.00025292	517.2912363406559	94.873	0.81634	94.873	94.394	95.211	0					37	15	3	0	0	0	0.11629	1	34818	34818		47.749	7.7914	1	13504000			24536	7080	17784	17913	24030	24030					0.05280759236347876
KEMPAVLVF	9	Unmodified	_KEMPAVLVF_					0	0	0		ENSG00000166479|ENST00000299608|TMX3;ENST00000569053.5_1_18:66357168-66367709:-|nuORF	ENSG00000166479|ENST00000299608|TMX3	ENSG00000166479|ENST00000299608|TMX3	MULTI-MSMS	A375_MHC_IP_R2	2	517.6908569335938	2	517.291171	1032.56779	-0.58926	-0.00030482	0.89634	0.00046367	0.30707	0.00015885	517.292007526549	93.821	1.6728	94.565	93.246	94.919	0.74474					52	32	3	0	0	0	0.070818	1	35636	35636		56.177	20.05	1	13125000			24537	7080	17784	17913	24031	24031					0.05280759236347876
KENAAYFQF	9	Unmodified	_KENAAYFQF_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R1	1	559.6694946289062	2	559.269281	1116.52401	-0.38791	-0.00021695	-0.27751	-0.0001552	-0.66542	-0.00037215	559.2692506957753	71.1	0.7168	71.1	70.749	71.465	0					32	13	3	0	0	0	0.016157	1	25803	25803		106.94	37.835	1	6921500			24538	14788;2060	17785	17914	24032	24032					-0.02959133936451508
KENAAYFQF	9	Unmodified	_KENAAYFQF_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R2	2	559.1383666992188	2	559.269281	1116.52401	-0.63222	-0.00035358	-0.013908	-7.7783E-06	-0.64613	-0.00036136	559.269141543287	70.356	0.66013	71.09	70.642	71.302	0.73421					19	12	2	0	0	0	0.03109	1	26634	26634		92.653	22.321	1	6165000			24539	14788;2060	17785	17914	24033	24033					-0.02959133936451508
KENAAYFQFF	10	Unmodified	_KENAAYFQFF_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R1	1	633.2033081054688	2	632.803488	1263.59242	-0.62578	-0.000396	0.29671	0.00018776	-0.32907	-0.00020824	632.8035399058482	104.24	0.61078	104.24	103.93	104.54	0					25	11	3	0	0	0	0.0049421	1	38263	38263		110.55	66.571	1	4748800			24540	14788;2060	17786	17915	24034	24034					-0.028828893566014813
KENAAYFQFF	10	Unmodified	_KENAAYFQFF_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R2	2	633.2027587890625	2	632.803488	1263.59242	-0.77375	-0.00048963	0.2159	0.00013662	-0.55785	-0.00035301	632.8034093913873	103.43	0.66099	104.2	103.84	104.5	0.76428					31	12	4	0	0	0	0.081287	1	39148	39148		80.676	43.601	1	4668300			24541	14788;2060	17786	17915	24035	24035					-0.028828893566014813
KENASIANEAQ	11	Unmodified	_KENASIANEAQ_					0	0	0			REV__MYO3A|p.R1150K|1|0.16|ENSG00000095777|chr10:26173713-26173713|G/A|missense_variant	REV__MYO3A|p.R1150K|1|0.16|ENSG00000095777|chr10:26173713-26173713|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	587.6483154296875	2	587.788566	1173.56258	-0.61298	-0.0003603	0.46305	0.00027218	-0.14993	-8.8127E-05	587.7883783056494	82.077	0.86578	82.82	82.431	83.297	0.74293					37	16	3	0	0	0	0.81292	1	31148	31148		26.021	0	1	3113500	+		24542	27069	17787	17916	24036	24036					-0.017258730925959753
KENDWGFSN	9	Unmodified	_KENDWGFSN_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;ENST00000505925.1_1_5:107060760-107061060:+|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	548.7050170898438	2	548.738345	1095.46214	-1.2372	-0.00067892	0.4181	0.00022943	-0.81914	-0.00044949	548.7385054991317	25.56	0.76391	26.22	25.838	26.602	0.65992					36	14	4	0	0	0	0.38603	1	8713	8713		25.399	14.575	1	43294000			24543	8836	17788	17917	24037	24037					-0.08177485355554381
KENEDKSF	8	Unmodified	_KENEDKSF_					0	0	0		DRC7|p.D406N|1|0.46|ENSG00000159625|chr16:57721676-57721676|G/A|missense_variant	DRC7|p.D406N|1|0.46|ENSG00000159625|chr16:57721676-57721676|G/A|missense_variant	DRC7|p.D406N|1|0.46|ENSG00000159625|chr16:57721676-57721676|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	499.6871643066406	2	498.735271	995.45599	-0.53565	-0.00026715	-0.31049	-0.00015485	-0.84614	-0.000422	498.7350574883636	31.034	0.86086	31.034	30.806	31.667	0					43	16	4	0	0	0	0.76248	1	9888	9888		16.942	0	1	23224000			24544	799	17789	17918	24038	24038					-0.041920035870930406
KENEVFRDW	9	Unmodified	_KENEVFRDW_					0	0	0		ENSG00000158545|ENST00000301011|ZC3H18;ENST00000568072.1_1_16:88666261-88675531:+|nuORF	ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	MULTI-MSMS	A375_MHC_IP_R1	1	408.59967041015625	3	408.199889	1221.57784	-0.31376	-0.00012808	0.089093	3.6368E-05	-0.22467	-9.1711E-05	408.19988752343727	47.029	0.51236	47.029	46.699	47.211	0					17	9	2	0	0	0	0.41879	1	16536	16536		17.863	13.334	1	2574900			24545	6311	17790	17919	24039	24039					-0.024089615047159896
KENEVFRDW	9	Unmodified	_KENEVFRDW_					0	0	0		ENSG00000158545|ENST00000301011|ZC3H18;ENST00000568072.1_1_16:88666261-88675531:+|nuORF	ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	MULTI-SECPEP	A375_MHC_IP_R2	2	408.59979248046875	3	408.199889	1221.57784	0.082108	3.3516E-05	-0.32491	-0.00013263	-0.2428	-9.9111E-05	408.19976649331886	46.055	0.40435	46.82	46.654	47.058	0.76519					19	7	3	0	0	0	0.67323	1	17275	17275		23.801	23.801	1	2478700			24546	6311	17790	17919	24040	24040					-0.024089615047159896
KENGFTQHVY	10	Unmodified	_KENGFTQHVY_					0	0	0		ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1	ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	MULTI-MSMS	A375_MHC_IP_R1	1	408.43328857421875	3	408.199889	1221.57784	-0.46299	-0.00018899	0.34443	0.0001406	-0.11856	-4.8395E-05	408.1998863110284	26.57	1.3641	26.57	26.118	27.482	0					28	26	2	0	0	0	0.52785	1	7923	7923		17.863	8.8869	1	3252800			24547	6144	17791	17920	24041	24041					-0.024089615047159896
KENGFTQHVY	10	Unmodified	_KENGFTQHVY_					0	0	0		ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1	ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	MULTI-MSMS	A375_MHC_IP_R1	1	612.19580078125	2	611.796195	1221.57784	-0.66059	-0.00040414	-0.13092	-8.0097E-05	-0.79151	-0.00048424	611.7960916524678	26.572	0.35524	26.572	26.423	26.779	0					12	6	2	0	0	0	0.015903	1	7955	7955		88.364	64.343	1	3961100			24548	6144	17791	17920	24042	24042					-0.024089615047159896
KENGFTQHVY	10	Unmodified	_KENGFTQHVY_					0	0	0		ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1	ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	MULTI-MSMS	A375_MHC_IP_R2	2	612.1954345703125	2	611.796195	1221.57784	-0.95483	-0.00058416	0.30173	0.0001846	-0.65311	-0.00039957	611.7964063215136	25.981	0.30516	26.641	26.5	26.805	0.65992					13	5	3	0	0	0	0.015903	1	8758	8758		88.364	57.727	1	4729000			24549	6144	17791	17920	24043	24043					-0.024089615047159896
KENGFTQHVY	10	Unmodified	_KENGFTQHVY_					0	0	0		ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1	ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	MULTI-SECPEP	A375_MHC_IP_R2	2	408.934326171875	3	408.199889	1221.57784	-0.41877	-0.00017094	0.38917	0.00015886	-0.029597	-1.2082E-05	408.53444274847027	25.967	0.81304	26.627	26.296	27.109	0.65992					20	15	2	0	0	0	0.61782	1	8764	8764		42.835	34.391	1	4093200			24550	6144	17791	17920	24044	24044					-0.024089615047159896
KENGWIKEKY	10	Unmodified	_KENGWIKEKY_					0	0	0		ENSG00000149231|ENST00000646818|CCDC82	ENSG00000149231|ENST00000646818|CCDC82	ENSG00000149231|ENST00000646818|CCDC82	MULTI-MSMS	A375_MHC_IP_R1	1	432.6311340332031	3	432.231189	1293.67174	-0.18748	-8.1036E-05	-0.11303	-4.8855E-05	-0.30051	-0.00012989	432.23116019986054	24.892	0.40555	24.892	24.749	25.154	0					15	7	3	0	0	0	0.061707	1	7191	7191		64.86	48.723	1	5929400			24551	5790	17792	17921	24045	24045					0.036647575975621294
KENGWIKEKY	10	Unmodified	_KENGWIKEKY_					0	0	0		ENSG00000149231|ENST00000646818|CCDC82	ENSG00000149231|ENST00000646818|CCDC82	ENSG00000149231|ENST00000646818|CCDC82	MULTI-MSMS	A375_MHC_IP_R2	2	432.6310119628906	3	432.231189	1293.67174	-0.52292	-0.00022602	0.17342	7.4957E-05	-0.3495	-0.00015106	432.2313795187937	24.238	0.40651	24.882	24.653	25.06	0.64368					11	7	3	0	0	0	0.22711	1	7962	7962		47.724	34.189	1	8392000			24552	5790	17792	17921	24046	24046					0.036647575975621294
KENNIMITL	9	Unmodified	_KENNIMITL_					0	0	0		nc|ENSG00000065613|Q9H2G2-2|SLK;ENSG00000065613|ENST00000369755|SLK	nc|ENSG00000065613|Q9H2G2-2|SLK	nc|ENSG00000065613|Q9H2G2-2|SLK	MULTI-MSMS	A375_MHC_IP_R1	1	538.6942138671875	2	538.294442	1074.57433	-0.6728	-0.00036216	-0.065854	-3.5449E-05	-0.73865	-0.00039761	538.2944773884683	75	0.50789	75	74.754	75.262	0					13	9	2	0	0	0	0.12771	1	27331	27331		45.7	7.5484	1	1951000			24553	1389	17793	17922	24047	24047					0.04002652397048223
KENNIMITL	9	Oxidation (M)	_KENNIM(Oxidation (M))ITL_		KENNIM(1)ITL		KENNIM(54)ITL	0	0	1		nc|ENSG00000065613|Q9H2G2-2|SLK;ENSG00000065613|ENST00000369755|SLK	nc|ENSG00000065613|Q9H2G2-2|SLK	nc|ENSG00000065613|Q9H2G2-2|SLK	MULTI-SECPEP	A375_MHC_IP_R2	2	546.6912841796875	2	546.291899	1090.56925	-1.0863	-0.00059346	-0.58181	-0.00031784	-1.6681	-0.00091129	546.2917248160974	60.543	0.40681	61.288	61.057	61.464	0.74503					15	7	3	0	0	0	0.24324	1	22932	22932		53.833	23.196	1	1928500			24554	1389	17793	17923	24048	24048		37			0.02758348534439392
KENNIMITL	9	Oxidation (M)	_KENNIM(Oxidation (M))ITL_					0	0	1		nc|ENSG00000065613|Q9H2G2-2|SLK;ENSG00000065613|ENST00000369755|SLK	nc|ENSG00000065613|Q9H2G2-2|SLK	nc|ENSG00000065613|Q9H2G2-2|SLK	MULTI-MATCH	A375_MHC_IP_R1	1		2	546.291899	1090.56925	-0.56255	-0.00030731	-0.83881	-0.00045823	-1.4014	-0.00076555	546.2916246606932	61.439	0.51035	61.439	61.176	61.686	0	0.075685	-0.00019623	NaN	99.755	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3994300			24555	1389	17793	17923				37			0.02758348534439392
KENPKEFFW	9	Unmodified	_KENPKEFFW_					0	0	0		ENST00000552121.5_1_12:88429328-88442196:+|nuORF;ENST00000547468.1_1_12:88436564-88442196:+|nuORF;nc|ENSG00000133641|Q8N999-3|RLIG1;ENSG00000133641|ENST00000356891|C12orf29;ENST00000550333.5_1_12:88429286-88442196:+|nuORF;ENST00000552803.5_1_12:88429407-88437530:+|nuORF;ENST00000548511.5_1_12:88429578-88437530:+|nuORF;ENST00000552847.5_1_12:88429328-88439561:+|nuORF	ENST00000552121.5_1_12:88429328-88442196:+|nuORF	ENST00000552121.5_1_12:88429328-88442196:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	613.2056274414062	2	612.806031	1223.59751	-0.26535	-0.00016261	-0.058818	-3.6044E-05	-0.32417	-0.00019865	612.8059636346616	62.122	0.66609	62.122	61.788	62.454	0					33	12	3	0	0	0	0.0098876	1	22386	22386		117.84	61.661	1	15972000			24556	4520	17794	17924	24049	24049					-0.005345854939605488
KENPKEFFW	9	Unmodified	_KENPKEFFW_					0	0	0		ENST00000552121.5_1_12:88429328-88442196:+|nuORF;ENST00000547468.1_1_12:88436564-88442196:+|nuORF;nc|ENSG00000133641|Q8N999-3|RLIG1;ENSG00000133641|ENST00000356891|C12orf29;ENST00000550333.5_1_12:88429286-88442196:+|nuORF;ENST00000552803.5_1_12:88429407-88437530:+|nuORF;ENST00000548511.5_1_12:88429578-88437530:+|nuORF;ENST00000552847.5_1_12:88429328-88439561:+|nuORF	ENST00000552121.5_1_12:88429328-88442196:+|nuORF	ENST00000552121.5_1_12:88429328-88442196:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	409.2728271484375	3	408.873113	1223.59751	-0.030386	-1.2424E-05	0.04799	1.9622E-05	0.017604	7.1977E-06	408.8731453637725	62.116	0.61492	62.116	61.839	62.454	0					26	11	3	0	0	0	0.06083	1	22403	22403		55.235	37.371	1	5823400			24557	4520	17794	17924	24050	24050					-0.005345854939605488
KENPKEFFW	9	Unmodified	_KENPKEFFW_					0	0	0		ENST00000552121.5_1_12:88429328-88442196:+|nuORF;ENST00000547468.1_1_12:88436564-88442196:+|nuORF;nc|ENSG00000133641|Q8N999-3|RLIG1;ENSG00000133641|ENST00000356891|C12orf29;ENST00000550333.5_1_12:88429286-88442196:+|nuORF;ENST00000552803.5_1_12:88429407-88437530:+|nuORF;ENST00000548511.5_1_12:88429578-88437530:+|nuORF;ENST00000552847.5_1_12:88429328-88439561:+|nuORF	ENST00000552121.5_1_12:88429328-88442196:+|nuORF	ENST00000552121.5_1_12:88429328-88442196:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	613.2056274414062	2	612.806031	1223.59751	-0.85979	-0.00052688	0.2773	0.00016993	-0.58249	-0.00035695	612.8061031915696	61.242	0.70428	61.987	61.618	62.322	0.74503					39	13	4	0	0	0	0.0061124	1	23160	23160		133.05	67.817	1	13342000			24558	4520	17794	17924	24051	24051					-0.005345854939605488
KENPKEFFW	9	Unmodified	_KENPKEFFW_					0	0	0		ENST00000552121.5_1_12:88429328-88442196:+|nuORF;ENST00000547468.1_1_12:88436564-88442196:+|nuORF;nc|ENSG00000133641|Q8N999-3|RLIG1;ENSG00000133641|ENST00000356891|C12orf29;ENST00000550333.5_1_12:88429286-88442196:+|nuORF;ENST00000552803.5_1_12:88429407-88437530:+|nuORF;ENST00000548511.5_1_12:88429578-88437530:+|nuORF;ENST00000552847.5_1_12:88429328-88439561:+|nuORF	ENST00000552121.5_1_12:88429328-88442196:+|nuORF	ENST00000552121.5_1_12:88429328-88442196:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	409.27264404296875	3	408.873113	1223.59751	-0.29785	-0.00012178	0.044033	1.8004E-05	-0.25382	-0.00010378	408.87309302761435	61.268	0.65356	62.013	61.668	62.322	0.74503					30	12	3	0	0	0	0.056914	1	23175	23175		49.742	32.693	1	6944500			24559	4520	17794	17924	24052	24052					-0.005345854939605488
KENPLQFKF	9	Unmodified	_KENPLQFKF_					0	0	0		EZR|p.V477Cfs*5|1|0.38|ENSG00000092820|chr6:158767429-158767429|G/-|frameshift_variant;ENSG00000092820|ENST00000367075|EZR;nc|ENSG00000137710|P35241-3|RDX;ENSG00000137710|ENST00000645495|RDX;nc|ENSG00000137710|P35241-5|RDX	EZR|p.V477Cfs*5|1|0.38|ENSG00000092820|chr6:158767429-158767429|G/-|frameshift_variant	EZR|p.V477Cfs*5|1|0.38|ENSG00000092820|chr6:158767429-158767429|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	384.9481506347656	3	384.213358	1149.61824	0.32345	0.00012427	-0.1523	-5.8515E-05	0.17115	6.5759E-05	384.2132520153518	63.517	0.66393	63.517	63.223	63.887	0					28	12	3	0	0	0	0.28079	1	22926	22926		32.037	26.635	1	9197300			24560	2011	17795	17925	24053	24053					0.04942004885697315
KENPLQFKF	9	Unmodified	_KENPLQFKF_					0	0	0		EZR|p.V477Cfs*5|1|0.38|ENSG00000092820|chr6:158767429-158767429|G/-|frameshift_variant;ENSG00000092820|ENST00000367075|EZR;nc|ENSG00000137710|P35241-3|RDX;ENSG00000137710|ENST00000645495|RDX;nc|ENSG00000137710|P35241-5|RDX	EZR|p.V477Cfs*5|1|0.38|ENSG00000092820|chr6:158767429-158767429|G/-|frameshift_variant	EZR|p.V477Cfs*5|1|0.38|ENSG00000092820|chr6:158767429-158767429|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	576.2161865234375	2	575.816399	1149.61824	-0.14622	-8.4194E-05	-0.17774	-0.00010235	-0.32396	-0.00018654	575.8162397954693	63.513	0.91753	63.513	63.173	64.09	0					51	17	4	0	0	0	0.053555	1	22920	22920		90.135	50.185	1	24939000			24561	2011	17795	17925	24054	24054					0.04942004885697315
KENPLQFKF	9	Unmodified	_KENPLQFKF_					0	0	0		EZR|p.V477Cfs*5|1|0.38|ENSG00000092820|chr6:158767429-158767429|G/-|frameshift_variant;ENSG00000092820|ENST00000367075|EZR;nc|ENSG00000137710|P35241-3|RDX;ENSG00000137710|ENST00000645495|RDX;nc|ENSG00000137710|P35241-5|RDX	EZR|p.V477Cfs*5|1|0.38|ENSG00000092820|chr6:158767429-158767429|G/-|frameshift_variant	EZR|p.V477Cfs*5|1|0.38|ENSG00000092820|chr6:158767429-158767429|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	384.61346435546875	3	384.213358	1149.61824	-0.16234	-6.2371E-05	0.16322	6.2709E-05	0.0008799	3.3807E-07	384.21337035696956	62.622	0.8112	63.364	62.976	63.788	0.74263					35	15	3	0	0	0	0.062639	1	23693	23693		59.368	48.569	1	12954000			24562	2011	17795	17925	24055	24055					0.04942004885697315
KENPLQFKF	9	Unmodified	_KENPLQFKF_					0	0	0		EZR|p.V477Cfs*5|1|0.38|ENSG00000092820|chr6:158767429-158767429|G/-|frameshift_variant;ENSG00000092820|ENST00000367075|EZR;nc|ENSG00000137710|P35241-3|RDX;ENSG00000137710|ENST00000645495|RDX;nc|ENSG00000137710|P35241-5|RDX	EZR|p.V477Cfs*5|1|0.38|ENSG00000092820|chr6:158767429-158767429|G/-|frameshift_variant	EZR|p.V477Cfs*5|1|0.38|ENSG00000092820|chr6:158767429-158767429|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	576.184814453125	2	575.816399	1149.61824	-0.23421	-0.00013486	-0.45386	-0.00026134	-0.68807	-0.0003962	575.8160769266782	62.611	0.8112	63.353	62.976	63.788	0.74263					37	15	3	0	0	0	0.0095758	1	23703	23703		139.78	96.009	1	27163000			24563	2011	17795	17925	24056	24056					0.04942004885697315
KENPSSQYW	9	Unmodified	_KENPSSQYW_					0	0	0		ENSG00000112312|ENST00000230056|GMNN	ENSG00000112312|ENST00000230056|GMNN	ENSG00000112312|ENST00000230056|GMNN	MULTI-MSMS	A375_MHC_IP_R1	1	570.1616821289062	2	569.76182	1137.50909	-0.59986	-0.00034177	0.3838	0.00021867	-0.21606	-0.0001231	569.7618914527544	36.601	0.40617	36.601	36.339	36.745	0					12	7	2	0	0	0	0.13845	1	12281	12281		43.772	9.67	1	3131000			24564	3076	17796	17926	24057	24057					-0.05416625804446085
KENPSSQYW	9	Unmodified	_KENPSSQYW_					0	0	0		ENSG00000112312|ENST00000230056|GMNN	ENSG00000112312|ENST00000230056|GMNN	ENSG00000112312|ENST00000230056|GMNN	MULTI-MSMS	A375_MHC_IP_R2	2	570.1614379882812	2	569.76182	1137.50909	-0.49273	-0.00028074	0.080171	4.5679E-05	-0.41256	-0.00023506	569.7618073375344	35.82	0.40771	36.583	36.384	36.792	0.76338					15	7	3	0	0	0	0.094655	1	13022	13022		51.63	11.672	1	2785900			24565	3076	17796	17926	24058	24058					-0.05416625804446085
KENSIITKY	9	Unmodified	_KENSIITKY_					0	0	0		ENST00000521190.5_1_5:159840839-159846079:-|nuORF;ENSG00000164609|ENST00000297151|SLU7	ENST00000521190.5_1_5:159840839-159846079:-|nuORF	ENST00000521190.5_1_5:159840839-159846079:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	366.2727966308594	3	365.873001	1094.59717	-0.08814	-3.2248E-05	-0.097172	-3.5553E-05	-0.18531	-6.7801E-05	365.872962381919	26.57	0.55386	26.57	26.474	27.027	0					15	10	2	0	0	0	0.23226	2	7958	7916;7958		35.612	17.749	1	3741100			24566	6854	17797	17927	24059;24060	24060					0.05365994786188821
KENSIITKY	9	Unmodified	_KENSIITKY_					0	0	0		ENST00000521190.5_1_5:159840839-159846079:-|nuORF;ENSG00000164609|ENST00000297151|SLU7	ENST00000521190.5_1_5:159840839-159846079:-|nuORF	ENST00000521190.5_1_5:159840839-159846079:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	548.7053833007812	2	548.305864	1094.59717	-0.86169	-0.00047247	-0.094895	-5.2031E-05	-0.95659	-0.0005245	548.3057371946885	26.601	0.65472	26.601	26.373	27.027	0					34	12	4	0	0	0	0.0013475	1	7931	7931		202.97	143.6	1	43040000			24567	6854	17797	17927	24061	24061					0.05365994786188821
KENSIITKY	9	Unmodified	_KENSIITKY_					0	0	0		ENST00000521190.5_1_5:159840839-159846079:-|nuORF;ENSG00000164609|ENST00000297151|SLU7	ENST00000521190.5_1_5:159840839-159846079:-|nuORF	ENST00000521190.5_1_5:159840839-159846079:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	365.9267578125	3	365.873001	1094.59717	-0.36133	-0.0001322	0.53166	0.00019452	0.17033	6.232E-05	365.87301983585763	25.967	0.55953	26.627	26.398	26.957	0.65992					20	10	3	0	0	0	0.37338	1	8716	8716		26.021	15.122	1	4217400			24568	6854	17797	17927	24062	24062					0.05365994786188821
KENSIITKY	9	Unmodified	_KENSIITKY_					0	0	0		ENST00000521190.5_1_5:159840839-159846079:-|nuORF;ENSG00000164609|ENST00000297151|SLU7	ENST00000521190.5_1_5:159840839-159846079:-|nuORF	ENST00000521190.5_1_5:159840839-159846079:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	548.687744140625	2	548.305864	1094.59717	-1.2205	-0.0006692	0.22483	0.00012327	-0.99566	-0.00054593	548.3059706913174	25.966	0.55953	26.626	26.398	26.957	0.65992					31	10	4	0	0	0	0.011472	1	8691	8691		118.21	70.615	1	29309000			24569	6854	17797	17927	24063	24063					0.05365994786188821
KENSLITQF	9	Unmodified	_KENSLITQF_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-SECPEP	A375_MHC_IP_R1	1	540.689208984375	2	540.290214	1078.56587	-0.63247	-0.00034172	0.095916	5.1823E-05	-0.53655	-0.00028989	540.2902520228788	63.909	0.96578	63.909	63.58	64.546	0					50	18	4	0	0	0	0.030244	1	23061	23061		107.1	34.132	1	35517000			24570	2388	17798	17928	24064	24064					0.029734217520854145
KENSLITQF	9	Unmodified	_KENSLITQF_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-SECPEP	A375_MHC_IP_R2	2	540.689453125	2	540.290214	1078.56587	-0.80642	-0.0004357	0.073773	3.9859E-05	-0.73265	-0.00039584	540.2902420428746	63.014	1.0134	63.756	63.383	64.397	0.74263					51	19	4	0	0	0	0.05217	1	23818	23818		89.401	24.166	1	39369000			24571	2388	17798	17928	24065	24065					0.029734217520854145
KEPEQPPALW	10	Unmodified	_KEPEQPPALW_					0	0	0		ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	598.2109985351562	2	597.811313	1193.60807	-0.79447	-0.00047494	0.89653	0.00053596	0.10207	6.1018E-05	597.811612121485	68.104	0.75896	68.104	67.704	68.463	0					34	14	3	0	0	0	0.25713	1	24624	24624		78.06	36.221	1	5972800			24572	6030	17799	17929	24066	24066					0.019013971604636026
KEPEQPPALW	10	Unmodified	_KEPEQPPALW_					0	0	0		ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	MULTI-SECPEP	A375_MHC_IP_R2	2	598.2111206054688	2	597.811313	1193.60807	-0.5605	-0.00033507	0.67745	0.00040499	0.11695	6.9915E-05	597.81114979335	67.311	0.76231	68.047	67.648	68.41	0.73631					40	14	4	0	0	0	0.2613	1	25447	25447		86.332	14.41	1	5925000			24573	6030	17799	17929	24067	24067					0.019013971604636026
KEPFEPAHDNI	11	Unmodified	_KEPFEPAHDNI_					0	0	0			REV__ENSG00000113209|ENST00000231134|PCDHB5	REV__ENSG00000113209|ENST00000231134|PCDHB5	MULTI-SECPEP	A375_MHC_IP_R2	2	649.2136840820312	2	648.814584	1295.61462	-0.99424	-0.00064508	-0.065862	-4.2732E-05	-1.0601	-0.00068781	648.8145455197883	60.438	0.66293	61.183	60.903	61.566	0.74503					37	12	4	0	0	0	0.94168	1	22840	22840		15.248	5.8654	1	10426000	+		24574	17769	17800	17930	24068	24068					-0.021367096788026174
KEPFEPAHDNI	11	Unmodified	_KEPFEPAHDNI_					0	0	0			REV__ENSG00000113209|ENST00000231134|PCDHB5	REV__ENSG00000113209|ENST00000231134|PCDHB5	MULTI-MATCH	A375_MHC_IP_R1	1		2	648.814584	1295.61462	-0.37133	-0.00024093	-0.41213	-0.00026739	-0.78346	-0.00050832	648.8143519673606	61.144	0.61189	61.144	60.871	61.483	0	-0.019273	-0.00022012	NaN	15.248	31	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9692100	+		24575	17769	17800	17930							-0.021367096788026174
KEPKPLILVM	10	Unmodified	_KEPKPLILVM_					0	0	0			REV__ENSG00000117601|ENST00000367698|SERPINC1	REV__ENSG00000117601|ENST00000367698|SERPINC1	MSMS	A375_MHC_IP_R1	1	389.9595642089844	3	389.91051	1166.7097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.06	1	31.06	30.56	31.56	0								0	0	0	0.15306	1	9923	9923		10.899	2.9536	1		+		24576	18016	17801	17931	24069	24069					0.1330155225866747
KEPNSKLIHR	10	Unmodified	_KEPNSKLIHR_					0	0	0		nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;ENSG00000088367|ENST00000338074|EPB41L1	nc|ENSG00000088367|Q9H4G0-4|EPB41L1	nc|ENSG00000088367|Q9H4G0-4|EPB41L1	MULTI-SECPEP	A375_MHC_IP_R2	2	610.7347412109375	2	611.356754	1220.69895	-0.33661	-0.00020579	-0.51116	-0.0003125	-0.84777	-0.00051829	611.3562059945525	136.54	1.4376	136.65	136.2	137.64	0.11134					43	27	2	0	0	0	0.94102	1	53646	53646		5.7319	4.5385	1	2288100			24577	1890	17802	17932	24070	24070					0.09743285928584555
KEPSNLIEYYF	11	Unmodified	_KEPSNLIEYYF_					0	0	0			REV__ENST00000479421.5_2_20:43531717-43535076:+|nuORF	REV__ENST00000479421.5_2_20:43531717-43535076:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	702.247314453125	2	701.848093	1401.68163	-0.7752	-0.00054407	-0.03597	-2.5245E-05	-0.81117	-0.00056932	701.8479845834125	128.69	0.55621	128.93	128.76	129.31	0.23946					24	10	4	0	0	0	0.52344	1	50557	50557		29.841	0	1	73722000	+		24578	20527	17803	17933	24071	24071					-0.003140991876989574
KEPSTPAFSW	10	Unmodified	_KEPSTPAFSW_					0	0	0		nc|ENSG00000167601|P30530-2|AXL;ENSG00000167601|ENST00000301178|AXL;AXL|p.F470Lfs*25|1|0.05|ENSG00000167601|chr19:41242977-41242980|CTTC/-|frameshift_variant;ENST00000599659.5_1_19:41725288-41749617:+|nuORF	nc|ENSG00000167601|P30530-2|AXL	nc|ENSG00000167601|P30530-2|AXL	MULTI-MSMS	A375_MHC_IP_R2	2	575.7301025390625	2	575.282389	1148.55022	-0.48068	-0.00027653	1.5182	0.00087339	1.0375	0.00059686	575.28211900281	71.534	0.70965	72.268	71.857	72.567	0.73421					21	13	2	0	0	0	0.49514	1	27193	27193		28.495	5.3461	1	3078400			24579	7198	17804	17934	24072	24072					-0.01810864764956932
KEPVLLAIQEH	11	Unmodified	_KEPVLLAIQEH_					0	0	0			REV__nc|ENSG00000164308|Q6P179-3|ERAP2	REV__nc|ENSG00000164308|Q6P179-3|ERAP2	MSMS	A375_MHC_IP_R1	1	638.867431640625	2	638.86662	1275.71869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.22	1	122.22	121.72	122.72	0								0	0	0	0.16152	1	45458	45458		10.8	3.6978	1		+		24580	20480	17805	17935	24073	24073					0.09185617148727943
KEQEFGKLF	9	Unmodified	_KEQEFGKLF_					0	0	0		ENST00000422936.5_1_2:32094983-32168444:-|nuORF;ENST00000441868.2_1_6:135219409-135219799:+|nuORF;nc|ENSG00000162959|Q9Y316-2|MEMO1;ENSG00000162959|ENST00000404530|MEMO1;nc|ENSG00000162959|Q9Y316-3|MEMO1	ENST00000422936.5_1_2:32094983-32168444:-|nuORF	ENST00000422936.5_1_2:32094983-32168444:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	563.7001953125	2	563.300581	1124.58661	-0.23272	-0.00013109	-0.27191	-0.00015317	-0.50463	-0.00028426	563.3001878476161	54.073	0.70894	54.073	53.758	54.467	0					19	13	2	0	0	0	0.15736	1	19310	19310		57.108	30.839	1	2420400			24581	6618	17806	17936	24074	24074					0.029300121317419325
KEQEFGKLF	9	Unmodified	_KEQEFGKLF_					0	0	0		ENST00000422936.5_1_2:32094983-32168444:-|nuORF;ENST00000441868.2_1_6:135219409-135219799:+|nuORF;nc|ENSG00000162959|Q9Y316-2|MEMO1;ENSG00000162959|ENST00000404530|MEMO1;nc|ENSG00000162959|Q9Y316-3|MEMO1	ENST00000422936.5_1_2:32094983-32168444:-|nuORF	ENST00000422936.5_1_2:32094983-32168444:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	375.92724609375	3	375.86948	1124.58661	-0.3202	-0.00012035	0.13129	4.9347E-05	-0.18891	-7.1007E-05	375.8695655390653	53.149	0.50929	53.9	53.638	54.147	0.75105					14	9	2	0	0	0	0.46357	1	20084	20084		21.59	4.1475	1	1681800			24582	6618	17806	17936	24075	24075					0.029300121317419325
KEQEFGKLF	9	Unmodified	_KEQEFGKLF_					0	0	0		ENST00000422936.5_1_2:32094983-32168444:-|nuORF;ENST00000441868.2_1_6:135219409-135219799:+|nuORF;nc|ENSG00000162959|Q9Y316-2|MEMO1;ENSG00000162959|ENST00000404530|MEMO1;nc|ENSG00000162959|Q9Y316-3|MEMO1	ENST00000422936.5_1_2:32094983-32168444:-|nuORF	ENST00000422936.5_1_2:32094983-32168444:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	563.69970703125	2	563.300581	1124.58661	-1.1106	-0.00062559	0.078756	4.4363E-05	-1.0318	-0.00058122	563.3003727540344	53.168	0.40759	53.919	53.638	54.046	0.75105					10	7	2	0	0	0	0.35628	1	20076	20076		40.725	11.643	1	2953500			24583	6618	17806	17936	24076	24076					0.029300121317419325
KEQEHIINWVE	11	Unmodified	_KEQEHIINWVE_					0	0	0		ENST00000567330.1_1_16:75743035-75743521:-|nuORF	ENST00000567330.1_1_16:75743035-75743521:-|nuORF	ENST00000567330.1_1_16:75743035-75743521:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	475.6601257324219	3	475.577136	1423.70958	-0.75275	-0.00035799	-0.031017	-1.4751E-05	-0.78377	-0.00037274	475.5769060102289	49.149	0.55695	49.906	49.69	50.247	0.75737					16	10	2	0	0	0	1.0007	1	18588	18588		2.2527	2.2527	1	1132000			24584	13569	17807	17937	24077	24077					0.014672237923832654
KEQELQQTL	9	Unmodified	_KEQELQQTL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R1	1	559.1981201171875	2	558.798403	1115.58225	-0.69947	-0.00039086	-0.052974	-2.9602E-05	-0.75244	-0.00042046	558.7984227953411	32.861	0.45517	32.861	32.684	33.14	0					12	8	2	0	0	0	0.064556	1	10675	10675		103.42	13.284	1	3176100			24585	14788	17808	17938	24078	24078					0.029085029181942446
KEQELQQTL	9	Unmodified	_KEQELQQTL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R2	2	558.7244262695312	2	558.798403	1115.58225	-0.715	-0.00039954	-0.11622	-6.4943E-05	-0.83122	-0.00046448	558.7982935675126	32.162	0.45794	32.899	32.704	33.162	0.73692					18	8	3	0	0	0	0.077986	1	11422	11422		79.596	17.994	1	3865400			24586	14788	17808	17938	24079	24079					0.029085029181942446
KEQELRKERYK	11	Unmodified	_KEQELRKERYK_					0	0	0			REV__ENSG00000047410|ENST00000367478|TPR	REV__ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	A375_MHC_IP_R1	1	504.302734375	3	502.951085	1505.83143	-0.50416	-0.00025357	-0.37483	-0.00018852	-0.87899	-0.00044209	502.95093607761856	25.591	0.65988	25.591	25.357	26.017	0					47	12	5	0	0	0	0.73924	1	7551	7551		0.094841	0.094841	1	45270000	+		24587	16360	17809	17939	24080	24080					0.09874265874759658
KEQELRKERYK	11	Unmodified	_KEQELRKERYK_					0	0	0			REV__ENSG00000047410|ENST00000367478|TPR	REV__ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	A375_MHC_IP_R2	2	503.99066162109375	3	502.951085	1505.83143	-1.0622	-0.00053421	-0.16145	-8.1202E-05	-1.2236	-0.00061542	502.95105230144316	24.94	0.9156	25.583	25.364	26.28	0.64368					48	17	4	0	0	0	0.73924	1	8438	8438		0.094841	0	1	44217000	+		24588	16360	17809	17939	24081	24081					0.09874265874759658
KEQELRKERYK	11	Unmodified	_KEQELRKERYK_					0	0	0			REV__ENSG00000047410|ENST00000367478|TPR	REV__ENSG00000047410|ENST00000367478|TPR	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	502.951085	1505.83143	-0.50416	-0.00025357	-0.37483	-0.00018852	-0.87899	-0.00044209	502.95093607761856	25.591	0.65988	25.591	25.357	26.017	0	0.0038312	-0.00015542	NaN	0.094841	47	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45270000	+		24589	16360	17809	17939							0.09874265874759658
KEQELRKERYK	11	Unmodified	_KEQELRKERYK_					0	0	0			REV__ENSG00000047410|ENST00000367478|TPR	REV__ENSG00000047410|ENST00000367478|TPR	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	502.951085	1505.83143	-1.0622	-0.00053421	-0.16145	-8.1202E-05	-1.2236	-0.00061542	502.95105230144316	24.94	0.9156	25.583	25.364	26.28	0.64368	-0.0038312	0.00016654	NaN	0.094841	48	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44217000	+		24590	16360	17809	17939							0.09874265874759658
KEQEPKRPH	9	Unmodified	_KEQEPKRPH_					0	0	0		nc|ENSG00000138795|Q9UJU2-3|LEF1;nc|ENSG00000138795|Q9UJU2-7|LEF1;nc|ENSG00000138795|Q9UJU2-5|LEF1;nc|ENSG00000138795|Q9UJU2-6|LEF1;ENSG00000138795|ENST00000265165|LEF1	nc|ENSG00000138795|Q9UJU2-3|LEF1	nc|ENSG00000138795|Q9UJU2-3|LEF1	MULTI-SECPEP	A375_MHC_IP_R2	2	383.94390869140625	3	383.543878	1147.60981	-0.54485	-0.00020897	0.61492	0.00023585	0.070071	2.6875E-05	383.5441399246559	25.307	0.50958	25.95	25.719	26.229	0.64368					17	9	2	0	0	0	0.50702	1	8487	8487		23.79	8.8326	1	8599200			24591	5037	17810	17940	24082	24082					0.04190450969099402
KEQETALRVY	10	Unmodified	_KEQETALRVY_					0	0	0		nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENST00000470030.6_1_1:1247241-1248711:-|nuORF	nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	MULTI-MSMS	A375_MHC_IP_R1	1	413.2908020019531	3	412.890944	1235.651	-0.065351	-2.6983E-05	0.42238	0.0001744	0.35703	0.00014741	412.89106062429096	30.678	0.80782	30.678	30.251	31.059	0					27	15	3	0	0	0	0.0036544	1	9782	9782		76.416	47.135	1	3728600			24592	4074	17811	17941	24083	24083					0.04260167217898925
KEQETALRVY	10	Unmodified	_KEQETALRVY_					0	0	0		nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENST00000470030.6_1_1:1247241-1248711:-|nuORF	nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	MULTI-MSMS	A375_MHC_IP_R1	1	619.2324829101562	2	618.832777	1235.651	-0.66907	-0.00041404	0.020867	1.2913E-05	-0.6482	-0.00040113	618.8328121395066	30.695	0.50601	30.695	30.503	31.009	0					16	9	2	0	0	0	0.085909	1	9807	9807		66.683	32.461	1	2191200			24593	4074	17811	17941	24084	24084					0.04260167217898925
KEQETALRVY	10	Unmodified	_KEQETALRVY_					0	0	0		nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENST00000470030.6_1_1:1247241-1248711:-|nuORF	nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	MULTI-MSMS	A375_MHC_IP_R2	2	619.2328491210938	2	618.832777	1235.651	-0.90566	-0.00056045	0.19612	0.00012136	-0.70954	-0.00043909	618.8330081254115	30.014	0.45658	30.713	30.537	30.993	0.69872					14	8	2	0	0	0	0.21149	1	10556	10556		48.073	19.839	1	2377100			24594	4074	17811	17941	24085	24085					0.04260167217898925
KEQETALRVY	10	Unmodified	_KEQETALRVY_					0	0	0		nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENST00000470030.6_1_1:1247241-1248711:-|nuORF	nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	MULTI-SECPEP	A375_MHC_IP_R2	2	413.6250915527344	3	412.890944	1235.651	-0.2036	-8.4065E-05	0.44297	0.0001829	0.23936	9.8831E-05	412.8910339908942	30.042	0.81163	30.752	30.445	31.257	0.70949					25	15	2	0	0	0	0.17532	1	10530	10530		80.24	41.681	1	3496100			24595	4074	17811	17941	24086	24086					0.04260167217898925
KEQFPAEDEE	10	Unmodified	_KEQFPAEDEE_					0	0	0			REV__nc|ENSG00000069275|Q9H1E3-2|NUCKS1	REV__nc|ENSG00000069275|Q9H1E3-2|NUCKS1	MULTI-SECPEP	A375_MHC_IP_R1	1	611.6668701171875	2	611.267133	1220.51971	-0.27879	-0.00017041	0.42515	0.00025988	0.14637	8.9468E-05	611.2674169355626	42.208	0.45444	42.208	41.932	42.386	0					21	8	3	0	0	0	0.70528	1	14598	14598		26.268	26.268	1	7775100	+		24596	16556	17812	17942	24087	24087					-0.08172687940646028
KEQFPAEDEE	10	Unmodified	_KEQFPAEDEE_					0	0	0			REV__nc|ENSG00000069275|Q9H1E3-2|NUCKS1	REV__nc|ENSG00000069275|Q9H1E3-2|NUCKS1	MULTI-MSMS	A375_MHC_IP_R2	2	611.6669921875	2	611.267133	1220.51971	-0.65689	-0.00040153	0.30905	0.00018891	-0.34784	-0.00021262	611.2675215451054	41.449	0.45612	42.223	41.997	42.453	0.77451					23	8	4	0	0	0	0.42311	1	15368	15368		32.786	6.5175	1	8078900	+		24597	16556	17812	17942	24088	24088					-0.08172687940646028
KEQFPAEDEE	10	Unmodified	_KEQFPAEDEE_					0	0	0			REV__nc|ENSG00000069275|Q9H1E3-2|NUCKS1	REV__nc|ENSG00000069275|Q9H1E3-2|NUCKS1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	611.267133	1220.51971	-0.65689	-0.00040153	0.30905	0.00018891	-0.34784	-0.00021262	611.2675215451054	41.449	0.45612	42.223	41.997	42.453	0.77451	0.0075736	-6.061E-05	NaN	32.786	23	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8078900	+		24598	16556	17812	17942							-0.08172687940646028
KEQGQNLARQW	11	Unmodified	_KEQGQNLARQW_					0	0	0		nc|ENSG00000127314|P61224-2|RAP1B;nc|ENSG00000127314|P61224-4|RAP1B;ENST00000494982.1_1_1:112233982-112249293:+|nuORF;nc|ENSG00000127314|P61224-3|RAP1B;nc|ENSG00000254893|A6NIZ1|RAP1BL;ENSG00000127314|ENST00000250559|RAP1B;ENSG00000116473|ENST00000369709|RAP1A;ENST00000407180.1_1_6:117753081-117753195:+|nuORF	nc|ENSG00000127314|P61224-2|RAP1B	nc|ENSG00000127314|P61224-2|RAP1B	MULTI-SECPEP	A375_MHC_IP_R2	2	453.6361999511719	3	453.237225	1356.68985	-0.62599	-0.00028372	-0.46357	-0.00021011	-1.0896	-0.00049383	453.2366199833635	26.469	0.66043	27.129	26.857	27.517	0.65992					20	12	3	0	0	0	0.96045	1	8988	8988		22.109	20.181	1	4166700			24599	3398	17813	17943	24089	24089					0.025768925722786662
KEQIKVRERQY	11	Unmodified	_KEQIKVRERQY_					0	0	0			REV__APOH|p.G277R|1|0.75|ENSG00000091583|chr17:66214606-66214606|C/T|missense_variant	REV__APOH|p.G277R|1|0.75|ENSG00000091583|chr17:66214606-66214606|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	493.6422119140625	3	492.947563	1475.82086	-0.44336	-0.00021855	-0.080441	-3.9653E-05	-0.5238	-0.00025821	492.947289644323	40.091	0.45934	40.091	39.845	40.304	0					15	8	3	0	0	0	0.73807	1	13666	13666		1.2148	0.10508	1	2951400	+		24600	15426	17814	17944	24090	24090					0.10198283220324811
KEQILQQRF	9	Unmodified	_KEQILQQRF_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.R7429Ifs*19|1|0.07|ENSG00000131018|chr6:152214911-152214966|TCTTTCTGTAGTCTGAGAGGAGATCAGAGACCAATGGCGGTTCAGATTCTGCATTC/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000471834.1_1_6:152690575-152702320:-|nuORF;nc|ENSG00000131018|Q8NF91-12|SYNE1;ENST00000461872.6_1_6:152697470-152697710:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MSMS	A375_MHC_IP_R2	2	397.27178955078125	3	397.227779	1188.66151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.045	1	35.808	35.308	36.308	0.76338								0	0	0	0.12086	1	12685	12685		35.612	10.731	1				24601	4300	17815	17945	24091	24091					0.07472194662977927
KEQSIVEKF	9	Unmodified	_KEQSIVEKF_					0	0	0		ENST00000537163.5_1_14:21967572-21971372:-|nuORF;ENST00000536201.5_1_14:21969853-21979446:-|nuORF;ENSG00000165819|ENST00000298717|METTL3	ENST00000537163.5_1_14:21967572-21971372:-|nuORF	ENST00000537163.5_1_14:21967572-21971372:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	554.70556640625	2	554.305864	1106.59717	-0.61767	-0.00034238	0.046276	2.5651E-05	-0.5714	-0.00031673	554.3056167994557	33.218	0.60925	33.218	32.938	33.547	0					26	11	3	0	0	0	0.062502	1	10826	10826		74.2	16.478	1	7140200			24602	6993	17816	17946	24092	24092					0.04813994786195508
KEQSIVEKF	9	Unmodified	_KEQSIVEKF_					0	0	0		ENST00000537163.5_1_14:21967572-21971372:-|nuORF;ENST00000536201.5_1_14:21969853-21979446:-|nuORF;ENSG00000165819|ENST00000298717|METTL3	ENST00000537163.5_1_14:21967572-21971372:-|nuORF	ENST00000537163.5_1_14:21967572-21971372:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	554.704833984375	2	554.305864	1106.59717	-0.80867	-0.00044825	-0.3553	-0.00019694	-1.164	-0.00064519	554.3054627154476	32.359	0.35674	33.095	32.909	33.265	0.73691					13	6	3	0	0	0	0.023846	1	11517	11517		114.5	40.297	1	6073200			24603	6993	17816	17946	24093	24093					0.04813994786195508
KEQVQFYL	8	Unmodified	_KEQVQFYL_					0	0	0		tr|U7SN87|U7SN87_FUSNUGlutamatemutaseepsilonsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmEPE=3SV=1	tr|U7SN87|U7SN87_FUSNUGlutamatemutaseepsilonsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmEPE=3SV=1	tr|U7SN87|U7SN87_FUSNUGlutamatemutaseepsilonsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmEPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	528.2098999023438	2	527.782025	1053.5495	-0.8309	-0.00043854	-2.2009	-0.0011616	-3.0318	-0.0016001	528.281033003945	57.497	0.35759	58.246	58.069	58.427	0.74894					8	6	2	0	0	0	0.7338	1	21676	21676		24.674	0.65332	1	1228100			24604	29543	17817	17947	24094	24094					0.024863405860060084
KEQYQQQQQW	10	Unmodified	_KEQYQQQQQW_					0	0	0		nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD;HNRNPD|p.S259L|1|0.26|ENSG00000138668|chr4:82356873-82356873|G/A|missense_variant;ENST00000514325.1_1_4:83277919-83278597:-|nuORF	nc|ENSG00000138668|Q14103-4|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	MULTI-MSMS	A375_MHC_IP_R1	1	697.728271484375	2	697.32839	1392.64223	-0.7153	-0.0004988	0.091984	6.4143E-05	-0.62332	-0.00043466	697.3285372486941	28.212	0.55388	28.212	27.937	28.491	0					22	10	3	0	0	0	8.3159E-11	1	8677	8677		220.1	220.1	1	16586000			24605	5019	17818	17948	24095	24095					-0.03838806418571039
KEQYQQQQQW	10	Unmodified	_KEQYQQQQQW_					0	0	0		nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD;HNRNPD|p.S259L|1|0.26|ENSG00000138668|chr4:82356873-82356873|G/A|missense_variant;ENST00000514325.1_1_4:83277919-83278597:-|nuORF	nc|ENSG00000138668|Q14103-4|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	MULTI-MSMS	A375_MHC_IP_R2	2	697.7279052734375	2	697.32839	1392.64223	-0.67862	-0.00047322	-0.059155	-4.1251E-05	-0.73777	-0.00051447	697.3283610517551	27.642	0.50581	28.32	28.098	28.604	0.67857					26	9	4	0	0	0	8.3159E-11	1	9466	9466		220.1	188.83	1	13178000			24606	5019	17818	17948	24096	24096					-0.03838806418571039
KERERRQRRRQ	11	Unmodified	_KERERRQRRRQ_					0	0	0			REV__ENSG00000159450|ENST00000614923|TCHH	REV__ENSG00000159450|ENST00000614923|TCHH	MSMS	A375_MHC_IP_R2	2	799.8676147460938	2	799.464544	1596.91454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.99	1	145.01	144.51	145.51	0.021408								0	0	0	0.16354	1	56618	56618		0.30703	0.30703	1		+		24607	20121	17819	17949	24097	24097					0.1399544016596792
KERHIDALEDK	11	Unmodified	_KERHIDALEDK_					0	0	0		MRE11A|p.N511Ifs*13|1|0.4|ENSG00000020922|chr11:94456307-94456307|T/-|frameshift_variant;nc|ENSG00000020922|P49959-2|MRE11;ENSG00000020922|ENST00000323929|MRE11;nc|ENSG00000020922|P49959-3|MRE11	MRE11A|p.N511Ifs*13|1|0.4|ENSG00000020922|chr11:94456307-94456307|T/-|frameshift_variant	MRE11A|p.N511Ifs*13|1|0.4|ENSG00000020922|chr11:94456307-94456307|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	452.3084411621094	3	451.908886	1352.70483	-0.17091	-7.7235E-05	-0.44252	-0.00019998	-0.61342	-0.00027721	451.90867668770727	25.258	0.50875	25.258	25.104	25.613	0					23	9	3	0	0	0	0.72494	1	7355	7355		7.846	0	1	8109900			24608	1060	17820	17950	24098	24098					0.042583396495729176
KERIVVMYM	9	Unmodified	_KERIVVMYM_					0	0	0			REV__ENST00000469796.6_1_X:108885618-108885714:-|nuORF	REV__ENST00000469796.6_1_X:108885618-108885714:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	390.3076477050781	3	390.212084	1167.61442	-0.0055272	-2.1568E-06	-0.81104	-0.00031648	-0.81657	-0.00031864	390.54604697950333	52.875	0.25278	52.875	52.694	52.946	0					6	4	2	0	0	0	0.775	1	18853	18853		10.8	4.1691	1	815130	+		24609	25098	17821	17951	24099	24099					0.03731875795983797
KERKLEKKQQK	11	Unmodified	_KERKLEKKQQK_					0	0	0		nc|ENSG00000185596|C4AMC7|WASH3P;ENST00000557932.5_1_15:102513813-102516466:+|nuORF	nc|ENSG00000185596|C4AMC7|WASH3P	nc|ENSG00000185596|C4AMC7|WASH3P	MULTI-MSMS	A375_MHC_IP_R1	1	722.5740356445312	2	721.943724	1441.8729	-0.92413	-0.00066717	0.49983	0.00036085	-0.4243	-0.00030632	721.9438800084996	149.14	2.5413	149.14	147.46	150	0					267	103	5	0	0	0	0.73925	1	56612	56612		0.30703	0.03801	1	2984200			24610	14812	17822	17952	24100	24100					0.1696344663405398
KERKRWKARRN	11	Unmodified	_KERKRWKARRN_					0	0	0			REV__nc|ENSG00000100987|Q9NZR4-5|VSX1	REV__nc|ENSG00000100987|Q9NZR4-5|VSX1	MULTI-SECPEP	A375_MHC_IP_R1	1	509.20281982421875	3	509.974558	1526.90185	0.13987	7.1331E-05	-3.9146	-0.0019963	-3.7747	-0.001925	509.9730027720875	44.802	0.30328	44.802	44.575	44.878	0					6	5	2	0	0	0	1.0007	1	15605	15605		0.32927	0.033636	1	789310	+		24611	16102	17823	17953	24101	24101					0.15947028773734928
KERPSLQTTF	10	Unmodified	_KERPSLQTTF_					0	0	0		FAM217A|p.R307S|1|0.34|ENSG00000145975|chr6:4069302-4069302|T/G|missense_variant	FAM217A|p.R307S|1|0.34|ENSG00000145975|chr6:4069302-4069302|T/G|missense_variant	FAM217A|p.R307S|1|0.34|ENSG00000145975|chr6:4069302-4069302|T/G|missense_variant	MSMS	A375_MHC_IP_R1	1	402.9433898925781	3	402.887422	1205.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.539	1	39.539	39.039	40.039	0								0	0	0	0.15306	1	13525	13525		10.899	2.1472	1				24612	13972	17824	17954	24102	24102					0.04584184563464078
KERRLREY	8	Unmodified	_KERRLREY_					0	0	0			REV__ENST00000528190.1_1_11:82958997-82971147:+|nuORF	REV__ENST00000528190.1_1_11:82958997-82971147:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	383.27642822265625	3	383.887756	1148.64144	-0.43092	-0.00016542	-0.22827	-8.7631E-05	-0.65919	-0.00025305	383.8877225159363	24.441	0.25422	25.085	24.907	25.161	0.64368					5	4	2	0	0	0	0.93777	1	8029	8029		17.113	0	1	2906700	+		24613	19012	17825	17955	24103	24103					0.07306443723041411
KERRTMWKTFK	11	Unmodified	_KERRTMWKTFK_					0	0	0		ENST00000382040.3_1_2:7027134-7027179:+|nuORF	ENST00000382040.3_1_2:7027134-7027179:+|nuORF	ENST00000382040.3_1_2:7027134-7027179:+|nuORF	MSMS	A375_MHC_IP_R1	1	755.889404296875	2	755.919195	1509.82384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.84	1	125.84	125.34	126.34	0								0	0	0	0.1628	1	47965	47965		4.897	0	1				24614	11382	17826	17956	24104	24104					0.08931835073462935
KESDHIHII	9	Unmodified	_KESDHIHII_					0	0	0		ENSG00000167770|ENST00000538426|OTUB1;nc|ENSG00000167770|Q96FW1-2|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	MULTI-SECPEP	A375_MHC_IP_R1	1	364.93292236328125	3	364.532979	1090.57711	-0.21411	-7.8049E-05	0.62341	0.00022725	0.40931	0.00014921	364.53306811634525	29.175	0.70871	29.175	28.795	29.504	0					38	13	4	0	0	0	0.11436	1	9090	9090		53.404	19.002	1	20757000			24615	7222	17827	17957	24105	24105					0.03544243846226891
KESDHIHII	9	Unmodified	_KESDHIHII_					0	0	0		ENSG00000167770|ENST00000538426|OTUB1;nc|ENSG00000167770|Q96FW1-2|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6953735351562	2	546.29583	1090.57711	-0.95534	-0.0005219	-1.6879	-0.0009221	-2.6432	-0.001444	546.2960674419876	29.175	0.50807	29.175	28.895	29.403	0					13	9	3	0	0	0	0.31606	1	9131	9131		39.95	3.9055	1	4228300			24616	7222	17827	17957	24106	24106					0.03544243846226891
KESDHIHII	9	Unmodified	_KESDHIHII_					0	0	0		ENSG00000167770|ENST00000538426|OTUB1;nc|ENSG00000167770|Q96FW1-2|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	MULTI-SECPEP	A375_MHC_IP_R2	2	546.7190551757812	2	546.29583	1090.57711	-1.1929	-0.00065165	-1.5187	-0.00082964	-2.7115	-0.0014813	546.2963214289935	28.43	0.35535	29.109	28.808	29.163	0.67857					10	6	2	0	0	0	0.5212	1	9766	9766		32.786	12.332	1	2621300			24617	7222	17827	17957	24107	24107					0.03544243846226891
KESDILQRTY	10	Unmodified	_KESDILQRTY_					0	0	0		nc|ENSG00000147044|O14936-5|CASK;nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK	nc|ENSG00000147044|O14936-5|CASK	nc|ENSG00000147044|O14936-5|CASK	MULTI-SECPEP	A375_MHC_IP_R1	1	418.1271057128906	3	418.222582	1251.64592	0.20278	8.4805E-05	-0.15264	-6.3837E-05	0.050137	2.0968E-05	418.556971191597	33.951	0.35344	33.951	33.698	34.052	0					11	6	2	0	0	0	0.93407	1	11167	11167		11.065	6.9487	1	1607300			24618	5651	17828	17958	24108	24108					0.030158633552900938
KESDILQRTY	10	Unmodified	_KESDILQRTY_					0	0	0		nc|ENSG00000147044|O14936-5|CASK;nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK	nc|ENSG00000147044|O14936-5|CASK	nc|ENSG00000147044|O14936-5|CASK	MULTI-SECPEP	A375_MHC_IP_R2	2	418.1269226074219	3	418.222582	1251.64592	-0.21818	-9.1248E-05	-0.50243	-0.00021013	-0.72061	-0.00030138	418.5569120000544	33.114	0.35653	33.866	33.686	34.043	0.75225					11	6	2	0	0	0	0.92055	1	11886	11886		8.7518	4.6352	1	1126500			24619	5651	17828	17958	24109	24109					0.030158633552900938
KESDPHVIQ	9	Unmodified	_KESDPHVIQ_					0	0	0			REV__ENST00000520987.1_1_8:101149771-101157363:-|nuORF	REV__ENST00000520987.1_1_8:101149771-101157363:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	526.6932983398438	2	526.772188	1051.52982	-0.42569	-0.00022424	3.7841	0.0019934	3.3584	0.0017691	527.275121835001	55.745	0.50803	55.745	55.584	56.092	0					13	9	2	0	0	0	0.57432	1	19884	19884		16.149	0.30192	1	992370	+		24620	19985	17829	17959	24110	24110					0.006119645752505676
KESDPSKLQF	10	Unmodified	_KESDPSKLQF_					0	0	0		ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	MSMS	A375_MHC_IP_R1	1	589.7196044921875	2	589.806228	1177.5979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.904	1	34.904	34.404	35.404	0								0	0	0	0.12811	1	11553	11553		35.612	9.3441	1				24621	8512	17830	17960	24111	24111					0.016207894352419316
KESDPSKLQF	10	Unmodified	_KESDPSKLQF_					0	0	0		ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	MULTI-MSMS	A375_MHC_IP_R2	2	590.2059936523438	2	589.806228	1177.5979	-1.0541	-0.00062172	-2.2075	-0.001302	-3.2616	-0.0019237	589.8064641087979	33.826	0.80984	34.579	34.196	35.006	0.75225					49	15	5	0	0	0	2.7E-07	2	12216	12216;12296		205.73	108.8	1	17715000			24622	8512	17830	17960	24112;24113	24112					0.016207894352419316
KESEVFYEL	9	Unmodified	_KESEVFYEL_					0	0	0		ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A;HIF1A|p.R30Q|1|0.54|ENSG00000100644|chr14:61720435-61720435|G/A|missense_variant	ENSG00000100644|ENST00000337138|HIF1A	ENSG00000100644|ENST00000337138|HIF1A	MULTI-SECPEP	A375_MHC_IP_R2	2	572.6815185546875	2	572.282054	1142.54956	-0.24084	-0.00013783	0.21258	0.00012166	-0.028257	-1.6171E-05	572.282148420357	73.77	2.239	74.505	74.243	76.482	0.7354					79	43	6	0	0	0	0.090157	1	28009	28009		67.838	20.089	1	52202000			24623	2206	17831	17961	24114	24114					-0.016017042046541974
KESEVVMKF	9	Unmodified	_KESEVVMKF_					0	0	0		ENST00000473311.5_1_3:183906074-183911483:+|nuORF;nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000468892.5_1_3:183907488-183910505:+|nuORF	ENST00000473311.5_1_3:183906074-183911483:+|nuORF	ENST00000473311.5_1_3:183906074-183911483:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	549.188720703125	2	548.788992	1095.56343	-0.5065	-0.00027796	-0.79395	-0.00043571	-1.3004	-0.00071367	548.7886207945833	40.302	0.45881	40.302	40.1	40.559	0					11	8	2	0	0	0	0.53098	1	13858	13858		33.445	17.296	1	2642000			24624	6468	17832	17962	24115	24115					0.019472500227720957
KESHATLVF	9	Unmodified	_KESHATLVF_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	A375_MHC_IP_R2	2	516.72119140625	2	516.279649	1030.54475	-1.0891	-0.00056226	0.095161	4.913E-05	-0.9939	-0.00051313	516.2796108225364	38.681	0.55924	39.456	39.149	39.708	0.77451					22	10	3	0	0	0	0.27064	1	14208	14208		32.786	0.4802	1	5248000			24625	7325	17833	17963	24116	24116					0.030694564432451443
KESHATLVF	9	Unmodified	_KESHATLVF_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	516.279649	1030.54475	-1.0891	-0.00056226	0.095161	4.913E-05	-0.9939	-0.00051313	516.2796108225364	38.681	0.55924	39.456	39.149	39.708	0.77451	-0.12338	-0.00017488	NaN	32.786	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5248000			24626	7325	17833	17963							0.030694564432451443
KESHLPKLI	9	Unmodified	_KESHLPKLI_					0	0	0		BROX|p.L261Ifs*3|1|0.39|ENSG00000162819|chr1:222729643-222729644|TT/-|frameshift_variant;nc|ENSG00000162819|Q5VW32-2|BROX;ENSG00000162819|ENST00000340934|BROX	BROX|p.L261Ifs*3|1|0.39|ENSG00000162819|chr1:222729643-222729644|TT/-|frameshift_variant	BROX|p.L261Ifs*3|1|0.39|ENSG00000162819|chr1:222729643-222729644|TT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	355.9534606933594	3	355.553603	1063.63898	-0.41382	-0.00014714	-0.16976	-6.0358E-05	-0.58358	-0.00020749	355.55351377891907	34.672	0.71037	35.436	35.017	35.727	0.76338					29	13	3	0	0	0	0.2487	1	12526	12526		26.021	8.5781	1	3829800			24627	253	17834	17964	24117	24117					0.1097059526537123
KESIICKP	8	Unmodified	_KESIICKP_					0	0	0		nc|ENSG00000119684|Q9UHC1-2|MLH3;ENSG00000119684|ENST00000355774|MLH3	nc|ENSG00000119684|Q9UHC1-2|MLH3	nc|ENSG00000119684|Q9UHC1-2|MLH3	MULTI-MSMS	A375_MHC_IP_R2	2	460.6308898925781	2	459.259871	916.505189	-0.67893	-0.00031181	0.30709	0.00014103	-0.37185	-0.00017077	459.26007168044475	58.298	0.55827	59.047	58.729	59.287	0.74895					19	10	3	0	0	0	0.7762	1	22079	22079		8.7454	2.0222	1	2130800			24628	3610	17835	17965	24118	24118					0.043596131681624684
KESKDHQLLRY	11	Unmodified	_KESKDHQLLRY_					0	0	0		nc|ENSG00000084676|Q15788-2|NCOA1;nc|ENSG00000084676|Q15788-3|NCOA1;ENSG00000084676|ENST00000348332|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-SECPEP	A375_MHC_IP_R1	1	472.6692199707031	3	472.924647	1415.75211	-0.31357	-0.0001483	-1.5755	-0.00074509	-1.8891	-0.00089339	472.92396872780904	20.542	0.30573	20.542	20.384	20.69	0					8	5	2	0	0	0	1.0002	1	5240	5240		2.8433	1.7335	1	704760			24629	1800	17836	17966	24119	24119					0.06086618920630826
KESPLLFKF	9	Unmodified	_KESPLLFKF_					0	0	0		ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	MULTI-SECPEP	A375_MHC_IP_R1	1	554.6945190429688	2	554.823692	1107.63283	-0.51564	-0.00028609	-0.55987	-0.00031063	-1.0755	-0.00059672	554.8233120929191	77.686	0.51029	77.686	77.436	77.946	0					15	9	2	0	0	0	0.10495	1	28366	28366		65.474	30.542	1	3638500			24630	5654	17837	17967	24120	24120					0.0833207703383323
KESPLLFKF	9	Unmodified	_KESPLLFKF_					0	0	0		ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	MULTI-SECPEP	A375_MHC_IP_R2	2	554.635009765625	2	554.823692	1107.63283	-0.77155	-0.00042808	0.44919	0.00024922	-0.32236	-0.00017885	554.8236407878769	76.68	0.55859	77.421	77.146	77.705	0.74052					23	10	3	0	0	0	0.13199	1	29091	29091		69.338	39.498	1	3171000			24631	5654	17837	17967	24121	24121					0.0833207703383323
KESPTSVGF	9	Unmodified	_KESPTSVGF_					0	0	0		ENSG00000173894|ENST00000310942|CBX2	ENSG00000173894|ENST00000310942|CBX2	ENSG00000173894|ENST00000310942|CBX2	MULTI-MSMS	A375_MHC_IP_R1	1	476.6424255371094	2	476.242732	950.470912	-0.41813	-0.00019913	-0.087335	-4.1592E-05	-0.50546	-0.00024072	476.24258279709807	37.245	0.9672	37.245	36.945	37.913	0					32	18	3	0	0	0	0.082375	1	12516	12516		53.833	9.9745	1	9549700			24632	7837	17838	17968	24122	24122					-0.00630511719077731
KESPTSVGF	9	Unmodified	_KESPTSVGF_					0	0	0		ENSG00000173894|ENST00000310942|CBX2	ENSG00000173894|ENST00000310942|CBX2	ENSG00000173894|ENST00000310942|CBX2	MULTI-MSMS	A375_MHC_IP_R2	2	476.6420593261719	2	476.242732	950.470912	-0.79065	-0.00037654	-0.13812	-6.5781E-05	-0.92877	-0.00044232	476.24256273978176	36.454	0.81448	37.225	36.901	37.716	0.7709					30	15	3	0	0	0	0.082375	1	13253	13253		53.833	9.9745	1	15252000			24633	7837	17838	17968	24123	24123					-0.00630511719077731
KESSTVFEL	9	Unmodified	_KESSTVFEL_					0	0	0		ENSG00000103363|ENST00000409906|ELOB;nc|ENSG00000103363|Q15370-2|ELOB	ENSG00000103363|ENST00000409906|ELOB	ENSG00000103363|ENST00000409906|ELOB	MULTI-MSMS	A375_MHC_IP_R2	2	520.6687622070312	2	520.268947	1038.52334	-0.56785	-0.00029543	-0.16685	-8.6805E-05	-0.73469	-0.00038224	520.2687462856564	64.347	0.76337	65.087	64.547	65.31	0.74023					40	14	4	0	0	0	0.12771	1	24342	24342		45.7	15.063	1	13664000			24634	2448	17839	17969	24124	24124					0.005620266238793192
KESTLHLVL	9	Unmodified	_KESTLHLVL_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000143947|ENST00000272317|RPS27A;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000392399.3_1_2:137087013-137087097:-|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-SECPEP	A375_MHC_IP_R1	1	520.6505126953125	2	520.310949	1038.60735	-0.3894	-0.00020261	0.02704	1.4069E-05	-0.36236	-0.00018854	520.3109050014863	56.471	1.1179	56.471	56.041	57.159	0					63	21	5	0	0	0	0.006701	1	20252	20252		149.99	71.845	1	80241000			24635	9678	17840	17970	24125	24125					0.08958602511415847
KESTLHLVL	9	Unmodified	_KESTLHLVL_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000143947|ENST00000272317|RPS27A;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000392399.3_1_2:137087013-137087097:-|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-SECPEP	A375_MHC_IP_R2	2	520.710205078125	2	520.310949	1038.60735	-0.74309	-0.00038664	0.026384	1.3728E-05	-0.71671	-0.00037291	520.3109292025233	55.358	1.4239	56.109	55.729	57.152	0.75075					61	27	4	0	0	0	0.034037	1	20842	20842		88.954	27.596	1	103070000			24636	9678	17840	17970	24126	24126					0.08958602511415847
KESVVFHAY	9	Unmodified	_KESVVFHAY_					0	0	0		ENST00000581302.5_1_18:21033283-21057068:+|nuORF;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000584992.1_1_18:21044583-21047491:+|nuORF	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	540.6795043945312	2	540.279649	1078.54475	-0.55347	-0.00029903	-0.076244	-4.1193E-05	-0.62972	-0.00034022	540.2796808581277	35.141	0.55909	35.141	34.81	35.369	0					16	10	2	0	0	0	0.034037	1	11634	11634		99.799	27.877	1	6597200			24637	2323	17841	17971	24127	24127					0.00861456443226416
KESVVFHAY	9	Unmodified	_KESVVFHAY_					0	0	0		ENST00000581302.5_1_18:21033283-21057068:+|nuORF;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000584992.1_1_18:21044583-21047491:+|nuORF	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	540.67919921875	2	540.279649	1078.54475	-1.1709	-0.00063264	-0.028916	-1.5623E-05	-1.1999	-0.00064826	540.2794722742909	34.251	0.45863	35.003	34.803	35.262	0.75225					14	8	2	0	0	0	0.0022058	1	12356	12356		142.08	53.176	1	5142100			24638	2323	17841	17971	24128	24128					0.00861456443226416
KETDDGGRYW	10	Unmodified	_KETDDGGRYW_					0	0	0		ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	MULTI-MSMS	A375_MHC_IP_R1	1	409.9192199707031	3	409.519398	1225.53637	-0.2293	-9.3903E-05	0.20936	8.5738E-05	-0.019938	-8.1649E-06	409.5193726830037	28.059	0.55325	28.059	27.836	28.39	0					32	10	4	0	0	0	0.010716	1	8605	8605		110.18	110.18	1	10523000			24639	9314	17842	17972	24129	24129					-0.06738142264043745
KETDDGGRYW	10	Unmodified	_KETDDGGRYW_					0	0	0		ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	MULTI-MSMS	A375_MHC_IP_R1	1	614.17529296875	2	613.775459	1225.53637	-0.51802	-0.00031795	0.43584	0.00026751	-0.082182	-5.0441E-05	613.7758235887403	28.09	0.60381	28.09	27.836	28.44	0					27	11	3	0	0	0	0.0042916	1	8607	8607		166.77	166.77	1	9259900			24640	9314	17842	17972	24130	24130					-0.06738142264043745
KETDDGGRYW	10	Unmodified	_KETDDGGRYW_					0	0	0		ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	MULTI-MSMS	A375_MHC_IP_R2	2	409.91943359375	3	409.519398	1225.53637	0.080592	3.3004E-05	-0.32757	-0.00013415	-0.24698	-0.00010114	409.51919993391425	27.447	0.55722	28.126	27.895	28.452	0.67857					28	10	4	0	0	0	0.0031567	1	9373	9373		97.284	82.327	1	9830200			24641	9314	17842	17972	24131	24131					-0.06738142264043745
KETDDGGRYW	10	Unmodified	_KETDDGGRYW_					0	0	0		ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	MULTI-SECPEP	A375_MHC_IP_R2	2	614.1747436523438	2	613.775459	1225.53637	-0.50137	-0.00030773	0.12145	7.4545E-05	-0.37992	-0.00023318	613.7755332341883	27.428	0.60787	28.107	27.895	28.502	0.67857					23	11	3	0	0	0	0.030251	1	9386	9386		154.75	154.75	1	9255500			24642	9314	17842	17972	24132	24132					-0.06738142264043745
KETDVVLKV	9	Unmodified	_KETDVVLKV_					0	0	0		AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;ENSG00000131016|ENST00000402676|AKAP12	AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant	AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	516.2103881835938	2	515.810782	1029.60701	-0.36616	-0.00018887	0.073398	3.7859E-05	-0.29276	-0.00015101	515.8107908124081	38.704	0.50935	38.704	38.423	38.933	0					23	9	3	0	0	0	0.011418	1	13127	13127		93.938	42.308	1	21197000			24643	97	17843	17973	24133	24133					0.09339182791586609
KETDVVLKV	9	Unmodified	_KETDVVLKV_					0	0	0		AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;ENSG00000131016|ENST00000402676|AKAP12	AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant	AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	516.2103271484375	2	515.810782	1029.60701	-0.94115	-0.00048546	0.032329	1.6676E-05	-0.90882	-0.00046878	515.8108107424658	37.78	0.5126	38.554	38.279	38.791	0.77451					21	9	3	0	0	0	0.14554	1	13853	13853		49.527	19.687	1	13702000			24644	97	17843	17973	24134	24134					0.09339182791586609
KETEGFRRF	9	Unmodified	_KETEGFRRF_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1;ENST00000358133.5_1_1:11994791-12014648:+|nuORF	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	A375_MHC_IP_R1	1	390.9404602050781	3	390.540245	1168.59891	0.41097	0.0001605	0.0716	2.7963E-05	0.48258	0.00018847	390.54013515250045	21.559	0.81235	21.559	21.048	21.86	0					57	15	6	0	0	0	0.41409	1	5565	5565		17.443	4.57	1	11028000			24645	1777	17844	17974	24135	24135					0.02135048594800537
KETEGFRRF	9	Unmodified	_KETEGFRRF_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1;ENST00000358133.5_1_1:11994791-12014648:+|nuORF	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	A375_MHC_IP_R2	2	390.9402160644531	3	390.540245	1168.59891	-0.48266	-0.0001885	0.37925	0.00014811	-0.10341	-4.0385E-05	390.5403291850538	20.008	1.0153	20.618	19.993	21.008	0.61029					47	19	3	0	0	0	0.4867	1	6032	6032		14.405	6.46	1	9753300			24646	1777	17844	17974	24136	24136					0.02135048594800537
KETEGFRRF	9	Unmodified	_KETEGFRRF_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1;ENST00000358133.5_1_1:11994791-12014648:+|nuORF	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	390.540245	1168.59891	0.41097	0.0001605	0.0716	2.7963E-05	0.48258	0.00018847	390.54013515250045	21.559	0.81235	21.559	21.048	21.86	0	0	0	NaN	17.443	57	15	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11028000			24647	1777	17844	17974							0.02135048594800537
KETEIDQPQ	9	Unmodified	_KETEIDQPQ_					0	0	0			REV__ENST00000529805.1_1_11:105867080-105880474:-|nuORF	REV__ENST00000529805.1_1_11:105867080-105880474:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	362.96588134765625	3	363.180383	1086.51932	0.40471	0.00014698	3.0134	0.0010944	3.4181	0.0012414	363.1811424105819	21.261	0.70998	21.261	20.946	21.656	0					16	13	2	0	0	0	0.33896	1	5498	5498		33.445	9.6551	1	1581100	+		24648	21030	17845	17975	24137	24137					-0.020480628698578585
KETEIVKKL	9	Unmodified	_KETEIVKKL_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MSMS	A375_MHC_IP_R1	1	544.7393798828125	2	544.339707	1086.66486	-0.36894	-0.00020083	-0.18454	-0.00010045	-0.55348	-0.00030128	544.3395676023727	21.162	0.86705	21.162	20.587	21.454	0					55	16	4	0	0	0	0.0063765	1	5379	5379		154.75	65.352	1	16386000			24649	3341	17846	17976	24138	24138					0.12499444716991093
KETEIVKKL	9	Unmodified	_KETEIVKKL_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MSMS	A375_MHC_IP_R1	1	363.62896728515625	3	363.228897	1086.66486	0.39356	0.00014295	-0.39145	-0.00014219	0.0021143	7.6799E-07	363.22870831266147	22.899	1.8269	22.899	21.808	23.635	0					66	35	3	0	0	0	0.014148	4	6261	5810;6042;6261;6288		90.964	39.476	1	47923000			24650	3341	17846	17976	24139;24140;24141;24142	24141					0.12499444716991093
KETEIVKKL	9	Unmodified	_KETEIVKKL_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MSMS	A375_MHC_IP_R1	1	544.739501953125	2	544.339707	1086.66486	-0.35029	-0.00019068	-0.066167	-3.6017E-05	-0.41645	-0.00022669	544.3396314819275	22.899	0.35171	22.899	22.773	23.125	0					9	6	2	0	0	0	0.17375	1	6224	6224		42.312	12.472	1	3828900			24651	3341	17846	17976	24143	24143					0.12499444716991093
KETEIVKKL	9	Unmodified	_KETEIVKKL_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MSMS	A375_MHC_IP_R2	2	363.62872314453125	3	363.228897	1086.66486	-0.37099	-0.00013476	-0.22638	-8.2229E-05	-0.59738	-0.00021698	363.2288250155213	19.408	1.2613	20.012	19.483	20.745	0.60308					82	24	6	0	0	0	0.0013878	5	5876	5876;5911;5948;5974;6060		185.27	61.813	1	240770000			24652	3341	17846	17976	24144;24145;24146;24147;24148	24144					0.12499444716991093
KETEIVKKL	9	Unmodified	_KETEIVKKL_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MSMS	A375_MHC_IP_R2	2	544.7391967773438	2	544.339707	1086.66486	-1.0981	-0.00059776	0.12193	6.6371E-05	-0.9762	-0.00053139	544.3397177992218	19.406	0.65854	20.009	19.683	20.341	0.60308					40	12	4	0	0	0	0.0062394	1	5907	5907		179.28	92.025	1	17726000			24653	3341	17846	17976	24149	24149					0.12499444716991093
KETEIVKKL	9	Unmodified	_KETEIVKKL_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MSMS	A375_MHC_IP_R2	2	363.6286926269531	3	363.228897	1086.66486	-0.43294	-0.00015726	-0.22764	-8.2684E-05	-0.66058	-0.00023994	363.22886291252655	22.406	1.5316	23.025	22.285	23.817	0.61932					43	29	2	0	0	0	0.0013878	2	7117	7117;7226		150.18	52.436	1	29921000			24654	3341	17846	17976	24150;24151	24150					0.12499444716991093
KETEIVKKL	9	Unmodified	_KETEIVKKL_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MSMS	A375_MHC_IP_R2	2	544.7389526367188	2	544.339707	1086.66486	-1.1572	-0.00062991	-0.01638	-8.9164E-06	-1.1736	-0.00063883	544.3395928818387	22.406	0.25676	23.025	22.897	23.153	0.61932					7	4	2	0	0	0	0.51336	1	7138	7138		24.882	6.5085	1	2635000			24655	3341	17846	17976	24152	24152					0.12499444716991093
KETFMFSSL	9	Unmodified	_KETFMFSSL_					0	0	0			REV__ENSG00000183977|ENST00000389050|PP2D1	REV__ENSG00000183977|ENST00000389050|PP2D1	MSMS	A375_MHC_IP_R1	1	545.1901245117188	2	545.267893	1088.52123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.813	1	31.813	31.313	32.313	0								0	0	0	0.15486	1	10220	10220		12.532	0	1		+		24656	21791	17847	17977	24153	24153					-0.019487253855913877
KETHKKRRL	9	Unmodified	_KETHKKRRL_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MSMS	A375_MHC_IP_R1	1	399.6507263183594	3	399.250918	1194.73092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.5054	1	8.5054	8.0054	9.0054	0								0	0	0	0.15486	1	1951	1951		0.20686	0.047535	1		+		24657	22351	17848	17978	24154	24154					0.14134698402426693
KETIKKNIK	9	Unmodified	_KETIKKNIK_					0	0	0			REV__tr|U7STM1|U7STM1_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01537PE=4SV=1	REV__tr|U7STM1|U7STM1_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01537PE=4SV=1	MSMS	A375_MHC_IP_R1	1	367.9573974609375	3	367.904524	1100.69174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.294	1	27.294	26.794	27.794	0								0	0	0	0.15486	1	8256	8256		3.8763	1.1411	1		+		24658	28498	17849	17979	24155	24155					0.1454255332816956
KETLAQLSR	9	Unmodified	_KETLAQLSR_					0	0	0		nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	MULTI-MSMS	A375_MHC_IP_R2	2	523.2017822265625	2	523.303655	1044.59276	-0.51654	-0.00027031	-0.39868	-0.00020863	-0.91522	-0.00047894	523.3033894266176	132.11	0.81352	132.3	131.95	132.76	0.18953					22	15	2	0	0	0	0.65748	1	51960	51960		10.8	1.4521	1	3400200			24659	3212	17850	17980	24156	24156					0.07224530363282611
KETLPDSGF	9	Unmodified	_KETLPDSGF_					0	0	0		SON-ITSN1|1|fusion;SON-ITSN1|3|fusion;SON-ITSN1|2|fusion;SON-ITSN1|4|fusion;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-5|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-10|SON	SON-ITSN1|1|fusion	SON-ITSN1|1|fusion	MULTI-MSMS	A375_MHC_IP_R1	1	497.64776611328125	2	497.248015	992.481476	-0.30325	-0.00015079	-0.18868	-9.3823E-05	-0.49193	-0.00024461	497.24788253736165	88.332	1.0191	88.332	88	89.019	0					38	19	3	0	0	0	0.02559	1	32386	32386		78.728	5.7601	1	12636000			24660	29217	17851	17981	24157	24157					-0.015065290646589347
KETSLYQLQF	10	Unmodified	_KETSLYQLQF_					0	0	0		nc|ENSG00000141255|Q8NHS9-3|SPATA22;nc|ENSG00000141255|Q8NHS9-2|SPATA22;chr17:3469398-3513412|122|10.93|0.59|4.2|-|ENST00000541913|SPATA22,SPATA22;ENSG00000141255|ENST00000572969|SPATA22	nc|ENSG00000141255|Q8NHS9-3|SPATA22	nc|ENSG00000141255|Q8NHS9-3|SPATA22	MULTI-SECPEP	A375_MHC_IP_R2	2	420.15509033203125	3	419.555561	1255.64485	-0.23003	-9.6509E-05	0.03014	1.2645E-05	-0.19989	-8.3864E-05	419.5554642334047	35.952	0.4074	36.716	36.486	36.894	0.76338					18	7	3	0	0	0	0.92832	1	12998	12998		5.4027	0	1	4425200			24661	443	17852	17982	24158	24158					0.027256489863475508
KEVAEDVVAPE	11	Unmodified	_KEVAEDVVAPE_					0	0	0			REV__ENST00000607121.5_1_3:50403067-50403271:+|nuORF	REV__ENST00000607121.5_1_3:50403067-50403271:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	396.59326171875	3	395.871438	1184.59248	-0.40934	-0.00016205	-3.208	-0.00127	-3.6174	-0.001432	395.8698631814413	24.251	0.25327	24.895	24.705	24.958	0.64368					6	4	2	0	0	0	0.9881	1	7870	7870		7.846	1.2226	1	831630	+		24662	26538	17853	17983	24159	24159					0.007570658527583873
KEVAGIKFW	9	Unmodified	_KEVAGIKFW_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-SECPEP	A375_MHC_IP_R2	2	360.2744445800781	3	359.874565	1076.60187	-0.14755	-5.3098E-05	-0.082304	-2.9619E-05	-0.22985	-8.2717E-05	359.8744884699109	67.742	0.45844	68.478	68.256	68.715	0.73631					17	8	3	0	0	0	0.41434	1	25706	25706		30.703	9.1665	1	1221600			24663	3576	17854	17984	24160	24160					0.066629237196139
KEVAGIKFW	9	Unmodified	_KEVAGIKFW_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-SECPEP	A375_MHC_IP_R2	2	539.1898193359375	2	539.30821	1076.60187	-0.80157	-0.00043229	1.258	0.00067845	0.45643	0.00024616	539.3086421930939	67.76	0.61182	68.496	68.205	68.817	0.73608					25	11	3	0	0	0	0.71341	1	25635	25635		13.042	4.4492	1	1993000			24664	3576	17854	17984	24161	24161					0.066629237196139
KEVAGIKFW	9	Unmodified	_KEVAGIKFW_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MATCH	A375_MHC_IP_R1	1		2	539.30821	1076.60187	-0.71019	-0.00038301	0.9986	0.00053855	0.28841	0.00015554	539.3087265569909	68.679	0.71033	68.679	68.209	68.92	0	0.091418	-5.0981E-05	NaN	5.2969	20	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1549000			24665	3576	17854	17984							0.066629237196139
KEVCPVLDQF	10	Unmodified	_KEVCPVLDQF_					0	0	0		ENST00000470976.1_1_3:73045993-73110212:+|nuORF;nc|ENSG00000163605|Q9NY27-2|PPP4R2;ENSG00000163605|ENST00000356692|PPP4R2	ENST00000470976.1_1_3:73045993-73110212:+|nuORF	ENST00000470976.1_1_3:73045993-73110212:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	393.9693908691406	3	393.202242	1176.5849	0.039002	1.5336E-05	-0.33221	-0.00013063	-0.29321	-0.00011529	393.2010482156266	46.358	0.452	46.358	46.144	46.596	0					16	8	3	0	0	0	0.93566	1	16232	16232		6.6235	3.3038	1	1217300			24666	6690	17855	17985	24162	24162					0.003666350515004524
KEVCPVLDQF	10	Unmodified	_KEVCPVLDQF_					0	0	0		ENST00000470976.1_1_3:73045993-73110212:+|nuORF;nc|ENSG00000163605|Q9NY27-2|PPP4R2;ENSG00000163605|ENST00000356692|PPP4R2	ENST00000470976.1_1_3:73045993-73110212:+|nuORF	ENST00000470976.1_1_3:73045993-73110212:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	393.202242	1176.5849	-0.20396	-8.0199E-05	-1.9649	-0.00077259	-2.1688	-0.00085279	393.5357407258339	45.514	0.30397	46.279	46.099	46.403	0.76519	-0.039445	-0.00051283	NaN	6.6235	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	830670			24667	6690	17855	17985							0.003666350515004524
KEVDLLGEKS	10	Unmodified	_KEVDLLGEKS_					0	0	0			REV__nc|ENSG00000061918|Q02153-2|GUCY1B1	REV__nc|ENSG00000061918|Q02153-2|GUCY1B1	MULTI-MSMS	A375_MHC_IP_R1	1	373.248779296875	3	373.208161	1116.60265	0.326	0.00012166	0.7016	0.00026184	1.0276	0.00038351	373.2082657783772	25.28	0.71237	25.28	25.053	25.765	0					31	13	3	0	0	0	0.57453	1	7259	7259		22.775	7.5265	1	16282000	+		24668	16452	17856	17986	24163	24163					0.04901673578001464
KEVDPASNTY	10	Unmodified	_KEVDPASNTY_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;chrX:151919037-151923453|150|252.27|0.24|10.04|+|ENST00000431971|MAGEA4,MAGEA4;chrX:151914958-151923453|148|308.46|0.33|9.87|+|ENST00000441865|MAGEA4,MAGEA4;chrX:151913588-151923453|148|306.86|0.32|9.9|+|ENST00000448295|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-MSMS	A375_MHC_IP_R1	1	561.658447265625	2	562.266936	1122.51932	-0.44534	-0.0002504	-0.238	-0.00013382	-0.68334	-0.00038422	562.2668084010888	24.978	1.0162	24.978	24.647	25.664	0					81	19	6	0	0	0	6.1736E-07	3	7253	7179;7253;7452		200.32	111.37	1	860770000			24669	520	17857	17987	24164;24165;24166	24165					-0.03704062869860536
KEVDPASNTY	10	Unmodified	_KEVDPASNTY_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;chrX:151919037-151923453|150|252.27|0.24|10.04|+|ENST00000431971|MAGEA4,MAGEA4;chrX:151914958-151923453|148|308.46|0.33|9.87|+|ENST00000441865|MAGEA4,MAGEA4;chrX:151913588-151923453|148|306.86|0.32|9.9|+|ENST00000448295|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-MSMS	A375_MHC_IP_R2	2	562.6664428710938	2	562.266936	1122.51932	-0.91208	-0.00051283	-0.2322	-0.00013056	-1.1443	-0.00064339	562.2668335353353	24.494	0.96491	25.138	24.857	25.822	0.64368					82	18	6	0	0	0	2.9687E-05	2	8008	8008;8284		162.31	102.24	1	515700000			24670	520	17857	17987	24167;24168	24167					-0.03704062869860536
KEVDPTGHSF	10	Unmodified	_KEVDPTGHSF_					0	0	0		ENSG00000124260|ENST00000370323|MAGEA10	ENSG00000124260|ENST00000370323|MAGEA10	ENSG00000124260|ENST00000370323|MAGEA10	MULTI-MSMS	A375_MHC_IP_R1	1	559.1694946289062	2	558.769645	1115.52474	-0.49146	-0.00027461	-0.44113	-0.00024649	-0.9326	-0.00052111	558.7695736882994	25.08	0.86238	25.08	24.903	25.765	0					52	16	4	0	0	0	2.3051000000000003E-41	2	7228	7228;7363		266.8	193.83	1	229950000			24671	3891	17858	17988	24169;24170	24169					-0.028403392873769917
KEVDPTGHSF	10	Unmodified	_KEVDPTGHSF_					0	0	0		ENSG00000124260|ENST00000370323|MAGEA10	ENSG00000124260|ENST00000370323|MAGEA10	ENSG00000124260|ENST00000370323|MAGEA10	MULTI-SECPEP	A375_MHC_IP_R1	1	373.248779296875	3	372.848856	1115.52474	0.34677	0.00012929	-0.65093	-0.0002427	-0.30415	-0.0001134	372.8487653594251	25.079	0.76075	25.079	24.903	25.664	0					24	14	2	0	0	0	0.088367	1	7259	7259		57.108	52.06	1	27611000			24672	3891	17858	17988	24171	24171					-0.028403392873769917
KEVDPTGHSF	10	Unmodified	_KEVDPTGHSF_					0	0	0		ENSG00000124260|ENST00000370323|MAGEA10	ENSG00000124260|ENST00000370323|MAGEA10	ENSG00000124260|ENST00000370323|MAGEA10	MULTI-MSMS	A375_MHC_IP_R2	2	559.1689453125	2	558.769645	1115.52474	-1.052	-0.00058785	-0.32997	-0.00018438	-1.382	-0.00077223	558.7696158181534	24.492	1.0173	25.136	24.907	25.924	0.64368					52	19	4	0	0	0	2.3051000000000003E-41	2	8034	8034;8136		266.8	209.08	1	163730000			24673	3891	17858	17988	24172;24173	24172					-0.028403392873769917
KEVDPTGHSF	10	Unmodified	_KEVDPTGHSF_					0	0	0		ENSG00000124260|ENST00000370323|MAGEA10	ENSG00000124260|ENST00000370323|MAGEA10	ENSG00000124260|ENST00000370323|MAGEA10	MULTI-SECPEP	A375_MHC_IP_R2	2	372.6365966796875	3	372.848856	1115.52474	0.079645	2.9696E-05	-1.0405	-0.00038794	-0.96082	-0.00035824	372.84863960195673	24.492	0.81192	25.136	24.907	25.719	0.64368					26	15	2	0	0	0	0.12137	1	8067	8067		51.488	31.501	1	22173000			24674	3891	17858	17988	24174	24174					-0.028403392873769917
KEVDPTSHSY	10	Unmodified	_KEVDPTSHSY_					0	0	0		nc|ENSG00000185247|P43364-2|MAGEA11;ENST00000518694.1_1_X:148796119-148798433:+|nuORF;ENSG00000185247|ENST00000355220|MAGEA11;ENST00000427910.1_1_X:35077528-35077942:+|nuORF	nc|ENSG00000185247|P43364-2|MAGEA11	nc|ENSG00000185247|P43364-2|MAGEA11	MSMS	A375_MHC_IP_R1	1	582.1720581054688	2	581.772385	1161.53022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.415	1	19.415	18.915	19.915	0								0	0	0	0.026677	1	4802	4802		59.052	34.061	1				24675	8652	17859	17989	24175	24175					-0.04408660495573713
KEVDVSKQL	9	Unmodified	_KEVDVSKQL_					0	0	0		ENST00000560673.1_1_15:40675453-40678696:+|nuORF;ENST00000560220.5_1_15:40676698-40685795:+|nuORF;nc|ENSG00000128944|Q9Y448-3|KNSTRN;nc|ENSG00000128944|Q9Y448-2|KNSTRN;ENSG00000128944|ENST00000249776|KNSTRN	ENST00000560673.1_1_15:40675453-40678696:+|nuORF	ENST00000560673.1_1_15:40675453-40678696:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	523.6975708007812	2	523.298039	1044.58152	-0.56312	-0.00029468	-0.10564	-5.5282E-05	-0.66877	-0.00034996	523.2979917630385	24.718	0.86034	24.718	24.547	25.408	0					45	16	5	0	0	0	1.9255E-11	1	7058	7058		234.93	142.27	1	188850000			24676	4171	17860	17990	24176	24176					0.06101708269147821
KEVDVSKQL	9	Unmodified	_KEVDVSKQL_					0	0	0		ENST00000560673.1_1_15:40675453-40678696:+|nuORF;ENST00000560220.5_1_15:40676698-40685795:+|nuORF;nc|ENSG00000128944|Q9Y448-3|KNSTRN;nc|ENSG00000128944|Q9Y448-2|KNSTRN;ENSG00000128944|ENST00000249776|KNSTRN	ENST00000560673.1_1_15:40675453-40678696:+|nuORF	ENST00000560673.1_1_15:40675453-40678696:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	523.6976928710938	2	523.298039	1044.58152	-0.80111	-0.00041922	-0.28791	-0.00015066	-1.089	-0.00056988	523.2978876704095	24.085	0.35656	24.729	24.55	24.907	0.64368					22	6	5	0	0	0	1.9255E-11	1	7832	7832		234.93	138.56	1	129240000			24677	4171	17860	17990	24177	24177					0.06101708269147821
KEVDVSKQL	9	Unmodified	_KEVDVSKQL_					0	0	0		ENST00000560673.1_1_15:40675453-40678696:+|nuORF;ENST00000560220.5_1_15:40676698-40685795:+|nuORF;nc|ENSG00000128944|Q9Y448-3|KNSTRN;nc|ENSG00000128944|Q9Y448-2|KNSTRN;ENSG00000128944|ENST00000249776|KNSTRN	ENST00000560673.1_1_15:40675453-40678696:+|nuORF	ENST00000560673.1_1_15:40675453-40678696:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	523.6972045898438	2	523.298039	1044.58152	-0.8749	-0.00045783	-0.21629	-0.00011318	-1.0912	-0.00057102	523.2978162478701	24.441	0.45713	25.085	24.907	25.364	0.64368					18	8	3	0	0	0	0.28625	1	8114	8114		31.636	14.193	1	31114000			24678	4171	17860	17990	24178	24178					0.06101708269147821
KEVEGAEVGW	10	Unmodified	_KEVEGAEVGW_					0	0	0		ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	MULTI-SECPEP	A375_MHC_IP_R1	1	552.6719360351562	2	552.272021	1102.52949	-0.38635	-0.00021337	-0.19714	-0.00010888	-0.58349	-0.00032224	552.2720563827654	47.824	0.5549	47.824	47.567	48.122	0					25	10	4	0	0	0	0.32288	1	16830	16830		59.368	3.8656	1	4261300			24679	7217	17861	17991	24179	24179					-0.0176745514461345
KEVEGAEVGW	10	Unmodified	_KEVEGAEVGW_					0	0	0		ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	MULTI-SECPEP	A375_MHC_IP_R2	2	552.6712646484375	2	552.272021	1102.52949	-0.57971	-0.00032016	0.35722	0.00019728	-0.22249	-0.00012288	552.2722974869205	47.081	0.56065	47.842	47.563	48.123	0.76128					20	10	3	0	0	0	0.32288	1	17651	17651		59.368	3.8656	1	3804400			24680	7217	17861	17991	24180	24180					-0.0176745514461345
KEVEYKQLW	9	Unmodified	_KEVEYKQLW_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-MSMS	A375_MHC_IP_R1	1	408.62060546875	3	408.220401	1221.63937	0.070137	2.8632E-05	0.35173	0.00014359	0.42187	0.00017222	408.22049768418725	47.921	0.70634	47.921	47.517	48.223	0					26	13	3	0	0	0	0.26911	1	16895	16895		32.898	16.623	1	4416200			24681	2747	17862	17992	24181	24181					0.03741970194550959
KEVEYKQLW	9	Unmodified	_KEVEYKQLW_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-SECPEP	A375_MHC_IP_R1	1	612.2262573242188	2	611.826963	1221.63937	-0.10511	-6.4307E-05	-0.23314	-0.00014264	-0.33824	-0.00020695	611.8265074901967	47.976	0.45459	47.976	47.718	48.173	0					18	8	3	0	0	0	0.65623	1	16920	16920		23.79	15.634	1	2636300			24682	2747	17862	17992	24182	24182					0.03741970194550959
KEVEYKQLW	9	Unmodified	_KEVEYKQLW_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-SECPEP	A375_MHC_IP_R2	2	408.6205749511719	3	408.220401	1221.63937	0.20362	8.3122E-05	0.0059861	2.4436E-06	0.20961	8.5566E-05	408.2203888644226	47.204	0.56076	47.965	47.664	48.225	0.76127					27	10	3	0	0	0	0.24324	1	17678	17678		23.801	5.9379	1	4656200			24683	2747	17862	17992	24183	24183					0.03741970194550959
KEVFLDRKL	9	Unmodified	_KEVFLDRKL_					0	0	0		ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33;nc|ENSG00000077254|Q8TEY7-3|USP33	ENSG00000077254|ENST00000370794|USP33	ENSG00000077254|ENST00000370794|USP33	MULTI-MSMS	A375_MHC_IP_R1	1	383.63275146484375	3	383.232641	1146.67609	0.33677	0.00012906	-0.15502	-5.9409E-05	0.18175	6.9651E-05	383.23252461332953	33.522	0.40693	33.522	33.291	33.698	0					16	7	3	0	0	0	0.043891	1	10956	10956		66.683	18.951	1	6757600			24684	1651	17863	17993	24184	24184					0.10862266811136578
KEVFPENGW	9	Unmodified	_KEVFPENGW_					0	0	0		ENSG00000087053|ENST00000346299|MTMR2;nc|ENSG00000087053|Q13614-2|MTMR2;MTMR2|p.K207E|1|0.07|ENSG00000087053|chr11:95857587-95857587|T/C|missense_variant	ENSG00000087053|ENST00000346299|MTMR2	ENSG00000087053|ENST00000346299|MTMR2	MULTI-SECPEP	A375_MHC_IP_R2	2	553.6685180664062	2	553.269281	1104.52401	-0.72164	-0.00039926	-0.41876	-0.00023169	-1.1404	-0.00063095	553.2690634946114	63.626	1.3192	64.366	63.531	64.85	0.74022					51	25	3	0	0	0	0.019499	1	24072	24072		103.42	74.338	1	1856600			24685	1850	17864	17994	24185	24185					-0.02407133936435457
KEVGETLLYY	10	Unmodified	_KEVGETLLYY_					0	0	0		ENSG00000127948|ENST00000461988|POR	ENSG00000127948|ENST00000461988|POR	ENSG00000127948|ENST00000461988|POR	MULTI-SECPEP	A375_MHC_IP_R2	2	608.218505859375	2	607.818804	1213.62306	-0.38748	-0.00023552	0.043103	2.6199E-05	-0.34438	-0.00020932	607.8187437701869	73.753	0.76492	74.489	73.99	74.754	0.73541					24	14	3	0	0	0	0.50381	1	27993	27993		47.594	3.822	1	3135300			24686	4112	17865	17995	24186	24186					0.024788442378394393
KEVIFSKQL	9	Unmodified	_KEVIFSKQL_					0	0	0		MSANTD4|p.R241Gfs*3|1|0.2|ENSG00000170903|chr11:106009852-106009852|G/-|frameshift_variant;ENSG00000170903|ENST00000301919|MSANTD4	MSANTD4|p.R241Gfs*3|1|0.2|ENSG00000170903|chr11:106009852-106009852|G/-|frameshift_variant	MSANTD4|p.R241Gfs*3|1|0.2|ENSG00000170903|chr11:106009852-106009852|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	546.7261352539062	2	546.326599	1090.63865	-0.46354	-0.00025325	-0.25569	-0.00013969	-0.71924	-0.00039294	546.3263782216169	40.41	0.35601	40.41	40.203	40.559	0					10	6	2	0	0	0	0.60171	1	13906	13906		32.898	12.483	1	2535100			24687	7557	17866	17996	24187	24187					0.09695175545516577
KEVILLPRCIR	11	Unmodified	_KEVILLPRCIR_					0	0	0			REV__ENSG00000047315|ENST00000314595|POLR2B	REV__ENSG00000047315|ENST00000314595|POLR2B	MSMS	A375_MHC_IP_R1	1	670.5746459960938	2	670.415757	1338.81696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.16	1	108.16	107.66	108.66	0								0	0	0	0.16223	1	39681	39681		7.1017	0.89594	1		+		24688	16359	17867	17997	24188	24188					0.1611052219288922
KEVLERLLF	9	Unmodified	_KEVLERLLF_					0	0	0			REV__ENSG00000140326|ENST00000356231|CDAN1	REV__ENSG00000140326|ENST00000356231|CDAN1	MULTI-MSMS	A375_MHC_IP_R1	1	383.3010559082031	3	382.900891	1145.68084	0.36945	0.00014146	-0.05731	-2.1944E-05	0.31214	0.00011952	382.90078989309814	54.695	0.91216	54.695	54.163	55.075	0					19	17	2	0	0	0	0.26169	1	19575	19575		33.445	9.6551	1	1842600	+		24689	19204	17868	17998	24189	24189					0.11383150953884069
KEVLERLLF	9	Unmodified	_KEVLERLLF_					0	0	0			REV__ENSG00000140326|ENST00000356231|CDAN1	REV__ENSG00000140326|ENST00000356231|CDAN1	MULTI-MATCH	A375_MHC_IP_R2	2		3	382.900891	1145.68084	-0.5144	-0.00019696	-0.098336	-3.7653E-05	-0.61273	-0.00023462	382.90090688654817	53.837	0.35949	54.588	54.404	54.764	0.75105	-0.053815	-1.4235E-05	NaN	33.445	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	956710	+		24690	19204	17868	17998							0.11383150953884069
KEVLPPIHAY	10	Unmodified	_KEVLPPIHAY_					0	0	0		ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	MULTI-SECPEP	A375_MHC_IP_R2	2	584.197265625	2	583.832049	1165.64954	-0.38214	-0.0002231	0.053204	3.1062E-05	-0.32893	-0.00019204	583.832064808839	48.348	0.40244	49.105	48.829	49.231	0.75737					12	7	2	0	0	0	0.49165	1	18139	18139		58.679	31.05	1	2182800			24691	7370	17869	17999	24190	24190					0.07334577919800722
KEVNFTSEL	9	Unmodified	_KEVNFTSEL_					0	0	0		nc|ENSG00000088325|Q9ULW0-2|TPX2;ENSG00000088325|ENST00000300403|TPX2	nc|ENSG00000088325|Q9ULW0-2|TPX2	nc|ENSG00000088325|Q9ULW0-2|TPX2	MULTI-SECPEP	A375_MHC_IP_R1	1	533.64697265625	2	533.774396	1065.53424	-0.58752	-0.00031361	0.31835	0.00016993	-0.26917	-0.00014368	533.7744451165108	56.982	0.56042	56.982	56.599	57.159	0					18	10	2	0	0	0	0.087712	1	20440	20440		66.457	18.708	1	4956000			24692	1889	17870	18000	24191	24191					0.004094289981367183
KEVNFTSEL	9	Unmodified	_KEVNFTSEL_					0	0	0		nc|ENSG00000088325|Q9ULW0-2|TPX2;ENSG00000088325|ENST00000300403|TPX2	nc|ENSG00000088325|Q9ULW0-2|TPX2	nc|ENSG00000088325|Q9ULW0-2|TPX2	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1737670898438	2	533.774396	1065.53424	-1.005	-0.00053643	0.1728	9.2237E-05	-0.83218	-0.00044419	533.7743883280833	56.184	0.71547	56.934	56.54	57.255	0.75014					27	13	3	0	0	0	0.061442	1	21214	21214		82.529	30.261	1	4758600			24693	1889	17870	18000	24192	24192					0.004094289981367183
KEVNIINVH	9	Unmodified	_KEVNIINVH_					0	0	0			REV__ZNF582|p.E476K|1|0.65|ENSG00000018869|chr19:56383991-56383991|C/T|missense_variant	REV__ZNF582|p.E476K|1|0.65|ENSG00000018869|chr19:56383991-56383991|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	533.2263793945312	2	533.306198	1064.59784	-1.05	-0.00055997	3.154	0.001682	2.104	0.0011221	533.8099602239927	57.601	0.50855	58.35	58.019	58.528	0.74894					12	9	2	0	0	0	0.71341	1	21834	21834		18.146	1.0335	1	966180	+		24694	16257	17871	18001	24193	24193					0.06812834225888764
KEVPALHYIF	10	Unmodified	_KEVPALHYIF_					0	0	0			REV__nc|ENSG00000132122|Q9NWH7-2|SPATA6	REV__nc|ENSG00000132122|Q9NWH7-2|SPATA6	MSMS	A375_MHC_IP_R1	1	406.26788330078125	3	406.229008	1215.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.397	1	20.397	19.897	20.897	0								0	0	0	0.15306	1	5233	5233		10.899	1.9227	1		+		24695	18638	17872	18002	24194	24194					0.06598864436818985
KEVSRVQW	8	Unmodified	_KEVSRVQW_					0	0	0		nc|ENSG00000183977|A8MPX8-2|PP2D1;nc|ENSG00000183977|A8MPX8-3|PP2D1;ENSG00000183977|ENST00000389050|PP2D1	nc|ENSG00000183977|A8MPX8-2|PP2D1	nc|ENSG00000183977|A8MPX8-2|PP2D1	MULTI-SECPEP	A375_MHC_IP_R2	2	516.6847534179688	2	516.285266	1030.55598	-0.58752	-0.00030333	-0.26115	-0.00013483	-0.84867	-0.00043816	516.2846610499889	47.272	0.30622	48.033	47.919	48.225	0.76127					12	5	3	0	0	0	0.95424	1	17785	17785		13.906	3.8321	1	2662500			24696	8547	17873	18003	24195	24195					0.04192278537379934
KEVSRVQW	8	Unmodified	_KEVSRVQW_					0	0	0		nc|ENSG00000183977|A8MPX8-2|PP2D1;nc|ENSG00000183977|A8MPX8-3|PP2D1;ENSG00000183977|ENST00000389050|PP2D1	nc|ENSG00000183977|A8MPX8-2|PP2D1	nc|ENSG00000183977|A8MPX8-2|PP2D1	MULTI-MATCH	A375_MHC_IP_R1	1		2	516.285266	1030.55598	-0.22692	-0.00011715	-1.5833	-0.00081744	-1.8102	-0.00093459	516.2847246979824	48.205	0.25397	48.205	48.02	48.274	0	0.085673	-0.00071882	NaN	19.257	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2228700			24697	8547	17873	18003							0.04192278537379934
KEVVNIQTWIN	11	Unmodified	_KEVVNIQTWIN_					0	0	0		ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23;ENSG00000036054|ENST00000394144|TBC1D23;ENST00000471273.1_1_3:100034907-100042509:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	672.7695922851562	2	672.369527	1342.7245	-0.63212	-0.00042502	0.3314	0.00022282	-0.30072	-0.0002022	672.3697433468946	75.598	0.60315	75.598	75.211	75.815	0					16	11	2	0	0	0	0.73189	1	27572	27572		7.1017	1.3699	1	2220000			24698	1135	17874	18004	24196	24196					0.06684715660389884
KEVVNIQTWIN	11	Unmodified	_KEVVNIQTWIN_					0	0	0		ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23;ENSG00000036054|ENST00000394144|TBC1D23;ENST00000471273.1_1_3:100034907-100042509:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	672.369527	1342.7245	-0.63212	-0.00042502	0.3314	0.00022282	-0.30072	-0.0002022	672.3697433468946	75.598	0.60315	75.598	75.211	75.815	0	0.10405	-5.4703E-05	NaN	7.1017	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2220000			24699	1135	17874	18004							0.06684715660389884
KEVVNIQTWIN	11	Unmodified	_KEVVNIQTWIN_					0	0	0		ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23;ENSG00000036054|ENST00000394144|TBC1D23;ENST00000471273.1_1_3:100034907-100042509:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	672.369527	1342.7245	-0.79079	-0.0005317	0.3947	0.00026538	-0.39609	-0.00026632	672.3699941435254	74.653	0.45869	75.39	75.111	75.57	0.73752	-0.10405	3.0413E-05	NaN	7.1017	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2990400			24700	1135	17874	18004							0.06684715660389884
KEWEELFVNNN	11	Unmodified	_KEWEELFVNNN_					0	0	0		TBC1D5|p.N463Ifs*6|1|0.45|ENSG00000131374|chr3:17238363-17238363|T/-|frameshift_variant;nc|ENSG00000131374|Q92609|TBC1D5;ENSG00000131374|ENST00000696125|TBC1D5	TBC1D5|p.N463Ifs*6|1|0.45|ENSG00000131374|chr3:17238363-17238363|T/-|frameshift_variant	TBC1D5|p.N463Ifs*6|1|0.45|ENSG00000131374|chr3:17238363-17238363|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	712.2393798828125	2	711.338424	1420.66229	-0.55859	-0.00039735	-0.096843	-6.8888E-05	-0.65543	-0.00046623	711.8394431178632	63.606	0.51237	63.606	63.274	63.786	0					13	9	2	0	0	0	0.73284	1	23031	23031		6.1918	0.46	1	3290300			24701	4323	17875	18005	24197	24197					-0.031210554785957356
KEWEELFVNNN	11	Unmodified	_KEWEELFVNNN_					0	0	0		TBC1D5|p.N463Ifs*6|1|0.45|ENSG00000131374|chr3:17238363-17238363|T/-|frameshift_variant;nc|ENSG00000131374|Q92609|TBC1D5;ENSG00000131374|ENST00000696125|TBC1D5	TBC1D5|p.N463Ifs*6|1|0.45|ENSG00000131374|chr3:17238363-17238363|T/-|frameshift_variant	TBC1D5|p.N463Ifs*6|1|0.45|ENSG00000131374|chr3:17238363-17238363|T/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	711.338424	1420.66229	-0.71023	-0.00050521	1.1635	0.00082764	0.45327	0.00032243	711.3397674179919	62.939	0.35387	63.681	63.484	63.838	0.74263	0.037574	0.001178	NaN	6.1918	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1879200			24702	4323	17875	18005							-0.031210554785957356
KEWEKVFEM	9	Unmodified	_KEWEKVFEM_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	A375_MHC_IP_R1	1	409.6021728515625	3	409.202242	1224.5849	-0.35148	-0.00014383	0.60683	0.00024832	0.25535	0.00010449	409.20238909515956	68.336	0.30513	68.336	68.209	68.514	0					9	5	2	0	0	0	0.22013	1	24808	24808		34.222	23.422	1	2026500			24703	1628	17876	18006	24198	24198					-0.01841364948518276
KEWEKVFEM	9	Unmodified	_KEWEKVFEM_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-SECPEP	A375_MHC_IP_R2	2	409.60235595703125	3	409.202242	1224.5849	0.04606	1.8848E-05	0.53198	0.00021769	0.57804	0.00023654	409.2024779684426	67.611	0.40752	68.347	68.104	68.511	0.73631					17	7	3	0	0	0	0.74597	1	25665	25665		16.566	11.669	1	1808600			24704	1628	17876	18006	24199	24199					-0.01841364948518276
KEWETIRSF	9	Unmodified	_KEWETIRSF_					0	0	0		ENSG00000149313|ENST00000278618|AASDHPPT	ENSG00000149313|ENST00000278618|AASDHPPT	ENSG00000149313|ENST00000278618|AASDHPPT	MULTI-MSMS	A375_MHC_IP_R1	1	599.2100219726562	2	598.308938	1194.60332	-0.38667	-0.00023135	-0.94126	-0.00056316	-1.3279	-0.00079451	598.3079874357384	50.278	1.5791	50.278	49.845	51.424	0					70	30	4	0	0	0	0.021859	1	17775	17775		81.915	31.982	1	23085000			24705	5801	17877	18007	24200	24200					0.013805130176933744
KEWETIRSF	9	Unmodified	_KEWETIRSF_					0	0	0		ENSG00000149313|ENST00000278618|AASDHPPT	ENSG00000149313|ENST00000278618|AASDHPPT	ENSG00000149313|ENST00000278618|AASDHPPT	MULTI-MSMS	A375_MHC_IP_R1	1	399.6086120605469	3	399.208384	1194.60332	-0.21862	-8.7277E-05	0.45864	0.00018309	0.24002	9.5817E-05	399.20855016767825	50.259	0.46068	50.259	49.998	50.459	0					25	8	4	0	0	0	0.0092511	1	17795	17795		94.909	64.205	1	7390000			24706	5801	17877	18007	24201	24201					0.013805130176933744
KEWETIRSF	9	Unmodified	_KEWETIRSF_					0	0	0		ENSG00000149313|ENST00000278618|AASDHPPT	ENSG00000149313|ENST00000278618|AASDHPPT	ENSG00000149313|ENST00000278618|AASDHPPT	MULTI-MSMS	A375_MHC_IP_R2	2	399.6083068847656	3	399.208384	1194.60332	-0.35209	-0.00014056	0.1686	6.7305E-05	-0.18349	-7.325E-05	399.2084199960829	49.464	0.60688	50.221	49.944	50.551	0.75737					26	11	3	0	0	0	0.0095341	1	18583	18583		80.896	48.858	1	12275000			24707	5801	17877	18007	24202	24202					0.013805130176933744
KEWETIRSF	9	Unmodified	_KEWETIRSF_					0	0	0		ENSG00000149313|ENST00000278618|AASDHPPT	ENSG00000149313|ENST00000278618|AASDHPPT	ENSG00000149313|ENST00000278618|AASDHPPT	MULTI-SECPEP	A375_MHC_IP_R2	2	598.7072143554688	2	598.308938	1194.60332	-0.82282	-0.0004923	-0.78167	-0.00046768	-1.6045	-0.00095998	598.307906796588	49.464	1.3699	50.221	49.843	51.213	0.75737					51	26	4	0	0	0	0.11606	1	18552	18552		81.915	46.983	1	20177000			24708	5801	17877	18007	24203	24203					0.013805130176933744
KEWLQTKERW	10	Unmodified	_KEWLQTKERW_					0	0	0		ENST00000425011.1_3_X:102840593-102841700:+|nuORF;ENST00000494801.5_1_X:102840495-102841700:+|nuORF	ENST00000425011.1_3_X:102840593-102841700:+|nuORF	ENST00000425011.1_3_X:102840593-102841700:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	468.9854736328125	3	468.585854	1402.73573	-1.0507	-0.00049232	0.052295	2.4505E-05	-0.99836	-0.00046782	468.5859453542709	37.409	0.40971	38.18	37.968	38.378	0.7709					13	7	2	0	0	0	0.61676	1	13680	13680		19.615	9.5991	1	6705900			24709	11783	17878	18008	24204	24204					0.05047537754489895
KEWLQTKERW	10	Unmodified	_KEWLQTKERW_					0	0	0		ENST00000425011.1_3_X:102840593-102841700:+|nuORF;ENST00000494801.5_1_X:102840495-102841700:+|nuORF	ENST00000425011.1_3_X:102840593-102841700:+|nuORF	ENST00000425011.1_3_X:102840593-102841700:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	468.585854	1402.73573	-0.68296	-0.00032003	0.30491	0.00014288	-0.37805	-0.00017715	468.58597299011717	38.293	0.40752	38.293	38.067	38.475	0	0.05665	0.00015263	NaN	19.615	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9051800			24710	11783	17878	18008							0.05047537754489895
KEWQKRRR	8	Unmodified	_KEWQKRRR_					0	0	0			REV__ENST00000553956.6_1_17:62527116-62533894:+|nuORF	REV__ENST00000553956.6_1_17:62527116-62533894:+|nuORF	MSMS	A375_MHC_IP_R1	1	396.2610168457031	3	396.235379	1185.68431	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.013	1	41.013	40.513	41.513	0								0	0	0	0.16876	1	14135	14135		5.7319	1.203	1		+		24711	26073	17879	18009	24205	24205					0.09889258571115533
KEWRKRKR	8	Unmodified	_KEWRKRKR_					0	0	0		nc|ENSG00000131470|Q9P2W1-3|PSMC3IP;nc|ENSG00000131470|Q9P2W1-2|PSMC3IP;ENSG00000131470|ENST00000393795|PSMC3IP	nc|ENSG00000131470|Q9P2W1-3|PSMC3IP	nc|ENSG00000131470|Q9P2W1-3|PSMC3IP	MULTI-MSMS	A375_MHC_IP_R2	2	396.5931091308594	3	396.247507	1185.72069	-0.55391	-0.00021949	-0.077508	-3.0712E-05	-0.63142	-0.0002502	396.24751394043744	25.152	0.76401	25.795	25.516	26.28	0.64368					41	14	4	0	0	0	0.7782	1	8261	8261		1.4819	0	1	13347000			24712	4333	17880	18010	24206	24206					0.1352613546782777
KEWRLENWKRL	11	Unmodified	_KEWRLENWKRL_					0	0	0		ENSG00000197563|ENST00000640252|PIGN	ENSG00000197563|ENST00000640252|PIGN	ENSG00000197563|ENST00000640252|PIGN	MSMS	A375_MHC_IP_R2	2	519.9857788085938	3	519.959803	1556.85758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.444	1	76.185	75.685	76.685	0.74052								0	0	0	0.16336	1	28639	28639		1.2148	0.70888	1				24713	9170	17881	18011	24207	24207					0.10142579836860932
KEWRNRRKKRR	11	Unmodified	_KEWRNRRKKRR_					0	0	0		nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A	nc|ENSG00000153253|Q9NY46-4|SCN3A	nc|ENSG00000153253|Q9NY46-4|SCN3A	MSMS	A375_MHC_IP_R1	1	807.2279663085938	2	806.990198	1611.96584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.053	1	98.053	97.553	98.553	0								0	0	0	0.1636	1	36025	36025		0	0	1				24714	6022	17882	18012	24208	24208					0.18433808930626583
KEWTEGWVY	9	Unmodified	_KEWTEGWVY_					0	0	0			REV__nc|ENSG00000149089|Q96GX9-3|APIP	REV__nc|ENSG00000149089|Q96GX9-3|APIP	MSMS	A375_MHC_IP_R1	1	399.7468566894531	3	399.857351	1196.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.206	1	50.206	49.706	50.706	0								0	0	0	0.1493	1	17780	17780		16.566	0	1		+		24715	19658	17883	18013	24209	24209					-0.04018864764952923
KEWTFPEAKW	10	Unmodified	_KEWTFPEAKW_					0	0	0		ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	MULTI-MSMS	A375_MHC_IP_R1	1	441.2716979980469	3	441.224034	1320.65027	-0.1178	-5.1976E-05	-0.084864	-3.7444E-05	-0.20266	-8.942E-05	441.2239152139601	75.803	0.40137	75.803	75.514	75.915	0					13	7	2	0	0	0	0.69875	2	27663	27652;27663		12.856	2.7272	1	1426100			24716	4998	17884	18014	24210;24211	24211					0.002773725688484774
KEWTFPEAKW	10	Unmodified	_KEWTFPEAKW_					0	0	0		ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	MULTI-MSMS	A375_MHC_IP_R2	2	441.2716369628906	3	441.224034	1320.65027	-0.39014	-0.00017214	0.42667	0.00018826	0.036536	1.612E-05	441.22401616286317	75.036	0.45391	75.773	75.519	75.973	0.73751					13	8	2	0	0	0	0.69875	1	28532	28532		12.856	2.5407	1	1178400			24717	4998	17884	18014	24212	24212					0.002773725688484774
KEWVTPKEF	9	Unmodified	_KEWVTPKEF_					0	0	0		ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	A375_MHC_IP_R1	1	582.7083740234375	2	582.308406	1162.60226	-0.24671	-0.00014366	-0.015455	-8.9994E-06	-0.26216	-0.00015266	582.308413042139	46.37	0.75778	46.37	45.992	46.749	0					40	14	4	0	0	0	0.0027118	1	16287	16287		177.58	125.95	1	33552000			24718	5434	17885	18015	24213	24213					0.027462986487989838
KEWVTPKEF	9	Unmodified	_KEWVTPKEF_					0	0	0		ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	A375_MHC_IP_R2	2	388.94110107421875	3	388.541363	1162.60226	-0.18251	-7.0914E-05	0.41056	0.00015952	0.22805	8.8607E-05	388.5414161022922	45.488	0.60573	46.253	46.048	46.654	0.76519					23	11	3	0	0	0	0.74875	1	17005	17005		10.899	6.183	1	6583900			24719	5434	17885	18015	24214	24214					0.027462986487989838
KEWVTPKEF	9	Unmodified	_KEWVTPKEF_					0	0	0		ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	A375_MHC_IP_R2	2	582.7083129882812	2	582.308406	1162.60226	-0.40597	-0.0002364	0.12119	7.057E-05	-0.28478	-0.00016583	582.308430241676	45.518	0.70626	46.283	45.947	46.654	0.76518					40	13	4	0	0	0	0.011004	1	17017	17017		132.38	73.701	1	32614000			24720	5434	17885	18015	24215	24215					0.027462986487989838
KEYDLAKKY	9	Unmodified	_KEYDLAKKY_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000196862|ENST00000408999|RGPD4	MULTI-MSMS	A375_MHC_IP_R1	1	386.9449768066406	3	386.544885	1156.61282	0.30514	0.00011795	0.1337	5.1681E-05	0.43884	0.00016963	386.54486584241727	20.232	0.5565	20.232	19.928	20.485	0					26	10	3	0	0	0	0.0098272	2	5131	5125;5131		115.06	57.81	1	15536000			24721	8657;9090;6015	17886	18016	24216;24217	24217					0.040782813032365084
KEYDLAKKY	9	Unmodified	_KEYDLAKKY_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000196862|ENST00000408999|RGPD4	MULTI-MSMS	A375_MHC_IP_R1	1	386.9449768066406	3	386.544885	1156.61282	0.62898	0.00024313	-0.52536	-0.00020307	0.10363	4.0056E-05	386.54478489905387	22.482	0.50621	22.482	22.317	22.823	0					14	9	3	0	0	0	0.37385	1	6051	6051		25.997	17.021	1	1297100			24722	8657;9090;6015	17886	18016	24218	24218					0.040782813032365084
KEYEKALKY	9	Unmodified	_KEYEKALKY_					0	0	0		ENST00000473527.5_1_7:100883089-100895220:-|nuORF;ENSG00000214253|ENST00000223136|FIS1;ENST00000482199.5_1_7:100883089-100884880:-|nuORF;ENST00000463406.5_1_7:100883089-100884437:-|nuORF	ENST00000473527.5_1_7:100883089-100895220:-|nuORF	ENST00000473527.5_1_7:100883089-100895220:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	586.7210083007812	2	586.321514	1170.62847	-0.18346	-0.00010757	-0.080657	-4.7291E-05	-0.26412	-0.00015486	586.3213770956222	20.308	0.5062	20.308	20.03	20.536	0					24	9	3	0	0	0	0.0097813	1	5168	5168		132.13	25.035	1	9253700			24723	9610	17887	18017	24219	24219					0.04998567820257449
KEYEKALKY	9	Unmodified	_KEYEKALKY_					0	0	0		ENST00000473527.5_1_7:100883089-100895220:-|nuORF;ENSG00000214253|ENST00000223136|FIS1;ENST00000482199.5_1_7:100883089-100884880:-|nuORF;ENST00000463406.5_1_7:100883089-100884437:-|nuORF	ENST00000473527.5_1_7:100883089-100895220:-|nuORF	ENST00000473527.5_1_7:100883089-100895220:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	391.95135498046875	3	391.216768	1170.62847	0.5278	0.00020648	-0.27031	-0.00010575	0.25748	0.00010073	391.21658560905706	22.444	1.0113	22.444	22.013	23.024	0					33	19	3	0	0	0	0.00075334	1	6018	6018		197.86	62	1	21972000			24724	9610	17887	18017	24220	24220					0.04998567820257449
KEYEKALKY	9	Unmodified	_KEYEKALKY_					0	0	0		ENST00000473527.5_1_7:100883089-100895220:-|nuORF;ENSG00000214253|ENST00000223136|FIS1;ENST00000482199.5_1_7:100883089-100884880:-|nuORF;ENST00000463406.5_1_7:100883089-100884437:-|nuORF	ENST00000473527.5_1_7:100883089-100895220:-|nuORF	ENST00000473527.5_1_7:100883089-100895220:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	586.720947265625	2	586.321514	1170.62847	0.11914	6.9855E-05	-0.064881	-3.8041E-05	0.05426	3.1814E-05	586.3210621788893	22.444	0.20316	22.444	22.317	22.52	0					6	3	2	0	0	0	0.61363	1	6053	6053		19.362	0	1	1510200			24725	9610	17887	18017	24221	24221					0.04998567820257449
KEYEKALKY	9	Unmodified	_KEYEKALKY_					0	0	0		ENST00000473527.5_1_7:100883089-100895220:-|nuORF;ENSG00000214253|ENST00000223136|FIS1;ENST00000482199.5_1_7:100883089-100884880:-|nuORF;ENST00000463406.5_1_7:100883089-100884437:-|nuORF	ENST00000473527.5_1_7:100883089-100895220:-|nuORF	ENST00000473527.5_1_7:100883089-100895220:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	391.6165466308594	3	391.216768	1170.62847	-0.45369	-0.00017749	0.46223	0.00018083	0.0085331	3.3383E-06	391.21692426201935	19.153	0.9185	19.756	19.423	20.341	0.60308					44	19	4	0	0	0	0.00075334	1	5820	5820		197.86	62	1	168930000			24726	9610	17887	18017	24222	24222					0.04998567820257449
KEYEKALKY	9	Unmodified	_KEYEKALKY_					0	0	0		ENST00000473527.5_1_7:100883089-100895220:-|nuORF;ENSG00000214253|ENST00000223136|FIS1;ENST00000482199.5_1_7:100883089-100884880:-|nuORF;ENST00000463406.5_1_7:100883089-100884437:-|nuORF	ENST00000473527.5_1_7:100883089-100895220:-|nuORF	ENST00000473527.5_1_7:100883089-100895220:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	586.7210693359375	2	586.321514	1170.62847	-0.81606	-0.00047848	0.21412	0.00012554	-0.60194	-0.00035293	586.3216953859317	19.112	0.35178	19.716	19.583	19.935	0.60308					14	6	3	0	0	0	0.0021188	1	5850	5850		166.77	26.136	1	9007800			24727	9610	17887	18017	24223	24223					0.04998567820257449
KEYEKALKY	9	Unmodified	_KEYEKALKY_					0	0	0		ENST00000473527.5_1_7:100883089-100895220:-|nuORF;ENSG00000214253|ENST00000223136|FIS1;ENST00000482199.5_1_7:100883089-100884880:-|nuORF;ENST00000463406.5_1_7:100883089-100884437:-|nuORF	ENST00000473527.5_1_7:100883089-100895220:-|nuORF	ENST00000473527.5_1_7:100883089-100895220:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	391.61669921875	3	391.216768	1170.62847	-0.51995	-0.00020341	0.52654	0.00020599	0.0065856	2.5764E-06	391.2169129667285	21.947	0.81725	22.567	22.285	23.102	0.61932					32	15	4	0	0	0	1.0281E-13	1	6948	6948		197.86	62	1	17207000			24728	9610	17887	18017	24224	24224					0.04998567820257449
KEYEKALKY	9	Unmodified	_KEYEKALKY_					0	0	0		ENST00000473527.5_1_7:100883089-100895220:-|nuORF;ENSG00000214253|ENST00000223136|FIS1;ENST00000482199.5_1_7:100883089-100884880:-|nuORF;ENST00000463406.5_1_7:100883089-100884437:-|nuORF	ENST00000473527.5_1_7:100883089-100895220:-|nuORF	ENST00000473527.5_1_7:100883089-100895220:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	586.321514	1170.62847	-0.87496	-0.00051301	1.22	0.00071534	0.34508	0.00020233	586.3223152499606	21.947	0.15337	22.567	22.49	22.643	0.61932	0.061041	0.00074667	NaN	19.362	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	642210			24729	9610	17887	18017							0.04998567820257449
KEYEKQAELL	10	Unmodified	_KEYEKQAELL_					0	0	0			REV__ENSG00000215305|ENST00000380445|VPS16	REV__ENSG00000215305|ENST00000380445|VPS16	MULTI-SECPEP	A375_MHC_IP_R1	1	417.28106689453125	3	417.559082	1249.65542	0.059582	2.4879E-05	-0.52886	-0.00022083	-0.46927	-0.00019595	417.5586921481672	19.421	0.58887	19.421	19.238	19.827	0					16	11	2	0	0	0	0.92055	1	4845	4845		12.228	0	1	1453900	+		24730	22674	17888	18018	24225	24225					0.04057631640807813
KEYEPEMGKVY	11	Oxidation (M)	_KEYEPEM(Oxidation (M))GKVY_		KEYEPEM(1)GKVY		KEYEPEM(58)GKVY	0	0	1		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000196296|O14983|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000196296|O14983|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	A375_MHC_IP_R1	1	463.9513244628906	3	463.551599	1387.63297	-0.22883	-0.00010607	-0.2561	-0.00011872	-0.48493	-0.00022479	463.55150030405343	24.977	0.45411	24.977	24.801	25.255	0					20	8	3	0	0	0	0.16804	1	7212	7212		58.398	50.969	1	20973000			24731	7877;9024	17889	18019	24226	24226		392			-0.045343358191303196
KEYEPEMGKVY	11	Oxidation (M)	_KEYEPEM(Oxidation (M))GKVY_		KEYEPEM(1)GKVY		KEYEPEM(95)GKVY	0	0	1		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000196296|O14983|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000196296|O14983|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	A375_MHC_IP_R1	1	695.2235107421875	2	694.82376	1387.63297	-0.61265	-0.00042569	-0.068635	-4.769E-05	-0.68129	-0.00047338	694.823833870782	24.977	0.40258	24.977	24.852	25.255	0					17	7	3	0	0	0	0.0068074	1	7226	7226		94.801	75.439	1	12452000			24732	7877;9024	17889	18019	24227	24227		392			-0.045343358191303196
KEYEPEMGKVY	11	Oxidation (M)	_KEYEPEM(Oxidation (M))GKVY_		KEYEPEM(1)GKVY		KEYEPEM(63)GKVY	0	0	1		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000196296|O14983|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000196296|O14983|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	A375_MHC_IP_R2	2	464.2853088378906	3	463.551599	1387.63297	-0.91309	-0.00042326	-0.056469	-2.6176E-05	-0.96955	-0.00044944	463.55157502640617	24.592	0.45713	25.236	24.907	25.364	0.64368					25	8	4	0	0	0	0.13977	1	8063	8063		63.164	52.098	1	11883000			24733	7877;9024	17889	18019	24228	24228		392			-0.045343358191303196
KEYEPEMGKVY	11	Unmodified	_KEYEPEMGKVY_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000196296|O14983|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000196296|O14983|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	A375_MHC_IP_R1	1	687.2264404296875	2	686.826303	1371.63805	-0.91717	-0.00062994	-0.17358	-0.00011922	-1.0908	-0.00074916	686.8262966397307	36.736	0.45616	36.736	36.489	36.945	0					25	8	4	0	0	0	1.1602E-15	2	12304	12298;12304		194.76	161.32	1	11918000			24734	7877;9024	17889	18020	24229;24230	24230					-0.03290031956498751
KEYEPEMGKVY	11	Unmodified	_KEYEPEMGKVY_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000196296|O14983|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000196296|O14983|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-SECPEP	A375_MHC_IP_R1	1	457.6586608886719	3	458.219961	1371.63805	-0.53507	-0.00024518	0.028985	1.3282E-05	-0.50609	-0.0002319	458.2198716045077	36.709	0.55622	36.709	36.489	37.045	0					27	10	4	0	0	0	0.99971	1	12445	12445		2.084	0.62885	1	11631000			24735	7877;9024	17889	18020	24231	24231					-0.03290031956498751
KEYEPEMGKVY	11	Unmodified	_KEYEPEMGKVY_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000196296|O14983|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000196296|O14983|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	A375_MHC_IP_R2	2	687.2256469726562	2	686.826303	1371.63805	-0.79978	-0.00054931	-0.25792	-0.00017715	-1.0577	-0.00072645	686.8262928121562	36.037	0.45998	36.8	36.537	36.997	0.76338					24	8	4	0	0	0	1.7205E-17	1	13070	13070		206.84	173.39	1	13292000			24736	7877;9024	17889	18020	24232	24232					-0.03290031956498751
KEYEPEMGKVY	11	Unmodified	_KEYEPEMGKVY_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000196296|O14983|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000196296|O14983|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	A375_MHC_IP_R2	2	458.6197204589844	3	458.219961	1371.63805	-0.47004	-0.00021538	0.030451	1.3953E-05	-0.43959	-0.00020143	458.21990837700577	36.051	0.76488	36.814	36.435	37.2	0.76338					34	14	5	0	0	0	0.024878	1	13088	13088		65.172	61.579	1	24102000			24737	7877;9024	17889	18020	24233	24233					-0.03290031956498751
KEYERAIIF	9	Unmodified	_KEYERAIIF_					0	0	0		ENSG00000148175|ENST00000286713|STOM	ENSG00000148175|ENST00000286713|STOM	ENSG00000148175|ENST00000286713|STOM	MULTI-SECPEP	A375_MHC_IP_R1	1	584.3400268554688	2	584.821681	1167.62881	-0.39488	-0.00023093	0.06243	3.651E-05	-0.33245	-0.00019442	584.8217786698107	53.157	0.6069	53.157	52.847	53.453	0					28	11	3	0	0	0	0.59927	1	18925	18925		19.362	4.5237	1	6085900			24738	5720	17890	18021	24234	24234					0.05169987540125476
KEYERAIIF	9	Unmodified	_KEYERAIIF_					0	0	0		ENSG00000148175|ENST00000286713|STOM	ENSG00000148175|ENST00000286713|STOM	ENSG00000148175|ENST00000286713|STOM	MULTI-MSMS	A375_MHC_IP_R2	2	390.6166687011719	3	390.21688	1167.62881	-0.54787	-0.00021379	0.34326	0.00013395	-0.20461	-7.9841E-05	390.21699915947573	52.243	0.45559	52.995	52.729	53.184	0.75225					20	8	3	0	0	0	0.2989	1	19665	19665		30.703	9.1133	1	4758400			24739	5720	17890	18021	24235	24235					0.05169987540125476
KEYERFSKY	9	Unmodified	_KEYERFSKY_					0	0	0		ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENST00000586558.5_1_19:14522263-14523533:-|nuORF;ENST00000590260.5_1_19:14522263-14530155:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF	ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	MULTI-MSMS	A375_MHC_IP_R1	1	417.6123046875	3	417.211906	1248.61389	0.27659	0.0001154	-0.053733	-2.2418E-05	0.22286	9.2981E-05	417.21186761369677	20.259	0.86199	20.259	19.725	20.587	0					60	16	5	0	0	0	0.0090297	2	5110	5091;5110		81.915	58.114	1	76957000			24740	9284;3828	17891	18022	24236;24237	24237					-0.00047504327858405304
KEYERFSKY	9	Unmodified	_KEYERFSKY_					0	0	0		ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENST00000586558.5_1_19:14522263-14523533:-|nuORF;ENST00000590260.5_1_19:14522263-14530155:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF	ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	MULTI-MSMS	A375_MHC_IP_R1	1	625.7140502929688	2	625.31422	1248.61389	-0.47859	-0.00029927	0.10464	6.5433E-05	-0.37395	-0.00023384	625.3142447826345	20.257	0.50616	20.257	19.928	20.435	0					20	9	3	0	0	0	0.0098956	1	5161	5161		118.21	80.034	1	4891700			24741	9284;3828	17891	18022	24238	24238					-0.00047504327858405304
KEYERFSKY	9	Unmodified	_KEYERFSKY_					0	0	0		ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENST00000586558.5_1_19:14522263-14523533:-|nuORF;ENST00000590260.5_1_19:14522263-14530155:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF	ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	MULTI-MSMS	A375_MHC_IP_R1	1	417.61187744140625	3	417.211906	1248.61389	0.59561	0.00024849	-0.73056	-0.0003048	-0.13495	-5.6304E-05	417.2116154282994	22.394	0.71069	22.394	22.062	22.773	0					24	13	4	0	0	0	0.012447	1	6009	6009		85.764	51.543	1	13748000			24742	9284;3828	17891	18022	24239	24239					-0.00047504327858405304
KEYERFSKY	9	Unmodified	_KEYERFSKY_					0	0	0		ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENST00000586558.5_1_19:14522263-14523533:-|nuORF;ENST00000590260.5_1_19:14522263-14530155:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF	ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	MULTI-MSMS	A375_MHC_IP_R2	2	417.6126403808594	3	417.211906	1248.61389	-0.31789	-0.00013263	0.2992	0.00012483	-0.01869	-7.7978E-06	417.21206028343573	19.107	0.53321	19.71	19.452	19.986	0.60308					33	10	5	0	0	0	0.0099638	1	5814	5814		112.04	86.044	1	94137000			24743	9284;3828	17891	18022	24240	24240					-0.00047504327858405304
KEYERFSKY	9	Unmodified	_KEYERFSKY_					0	0	0		ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENST00000586558.5_1_19:14522263-14523533:-|nuORF;ENST00000590260.5_1_19:14522263-14530155:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF	ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	MULTI-MSMS	A375_MHC_IP_R2	2	625.7137451171875	2	625.31422	1248.61389	-1.0634	-0.00066494	0.29035	0.00018156	-0.77302	-0.00048338	625.3143339503683	19.145	0.25011	19.748	19.583	19.833	0.60308					7	4	2	0	0	0	0.0089677	2	5869	5848;5869		98.73	72.462	1	4902300			24744	9284;3828	17891	18022	24241;24242	24242					-0.00047504327858405304
KEYERFSKY	9	Unmodified	_KEYERFSKY_					0	0	0		ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENST00000586558.5_1_19:14522263-14523533:-|nuORF;ENST00000590260.5_1_19:14522263-14530155:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF	ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	MULTI-MSMS	A375_MHC_IP_R2	2	417.6116638183594	3	417.211906	1248.61389	-0.38463	-0.00016047	0.058059	2.4223E-05	-0.32657	-0.00013625	417.211855157729	21.895	0.45943	22.514	22.336	22.795	0.61932					20	8	4	0	0	0	0.0090297	1	6946	6946		91.085	54.01	1	9646500			24745	9284;3828	17891	18022	24243	24243					-0.00047504327858405304
KEYGPIHILW	10	Unmodified	_KEYGPIHILW_					0	0	0		nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	MULTI-SECPEP	A375_MHC_IP_R2	2	628.7095947265625	2	628.345323	1254.67609	-0.75804	-0.00047631	-0.5389	-0.00033862	-1.2969	-0.00081492	628.3446394971407	88.338	0.30315	89.07	88.875	89.178	0.7318					8	5	2	0	0	0	0.90513	1	33652	33652		17.113	0	1	1319600			24746	6567	17892	18023	24244	24244					0.05894266811128546
KEYIPPLIW	9	Unmodified	_KEYIPPLIW_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MSMS	A375_MHC_IP_R1	1	579.8662719726562	2	579.831517	1157.64848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.05	1	117.05	116.55	117.55	0								0	0	0	0.15071	1	42951	42951		20.415	5.1661	1				24747	5163	17893	18024	24245	24245					0.07596363550896967
KEYIPPLIW	9	Unmodified	_KEYIPPLIW_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-SECPEP	A375_MHC_IP_R1	1	580.2313842773438	2	579.831517	1157.64848	0.17867	0.0001036	-0.21656	-0.00012557	-0.037893	-2.1972E-05	579.8313096462495	115.5	1.6782	115.5	114.97	116.65	0					104	32	4	0	0	0	0.03109	1	42456	42456		103.35	61.514	1	118780000			24748	5163	17893	18024	24246	24246					0.07596363550896967
KEYIPPLIW	9	Unmodified	_KEYIPPLIW_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-MSMS	A375_MHC_IP_R2	2	580.2301635742188	2	579.831517	1157.64848	-0.08156	-4.7291E-05	-0.30494	-0.00017681	-0.3865	-0.0002241	579.831287975202	114.63	1.7271	115.32	114.71	116.44	0.68999					103	33	4	0	0	0	0.13845	1	43498	43498		43.772	18.373	1	92025000			24749	5163	17893	18024	24247	24247					0.07596363550896967
KEYKLLKQLYG	11	Unmodified	_KEYKLLKQLYG_					0	0	0		tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1	tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1	tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1	MSMS	A375_MHC_IP_R1	1	461.66094970703125	3	461.606255	1381.79694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.195	1	49.195	48.695	49.695	0								0	0	0	0.16334	1	17390	17390		1.3296	0.63198	1				24750	29890	17894	18025	24248	24248					0.12131049733943655
KEYNPPESEYY	11	Unmodified	_KEYNPPESEYY_					0	0	0		ENSG00000114166|ENST00000263754|KAT2B	ENSG00000114166|ENST00000263754|KAT2B	ENSG00000114166|ENST00000263754|KAT2B	MULTI-SECPEP	A375_MHC_IP_R2	2	710.2081909179688	2	709.809165	1417.60378	-0.96924	-0.00068797	-0.48149	-0.00034176	-1.4507	-0.0010297	709.809002477158	40.892	0.45708	41.667	41.438	41.895	0.77451					15	8	2	0	0	0	0.75073	1	15194	15194		37.075	26.251	1	2969500			24751	3202	17895	18026	24249	24249					-0.08832156843732264
KEYNPPESEYY	11	Unmodified	_KEYNPPESEYY_					0	0	0		ENSG00000114166|ENST00000263754|KAT2B	ENSG00000114166|ENST00000263754|KAT2B	ENSG00000114166|ENST00000263754|KAT2B	MULTI-MATCH	A375_MHC_IP_R1	1		2	709.809165	1417.60378	-0.95536	-0.00067812	0.49651	0.00035243	-0.45885	-0.0003257	709.8093090925984	41.54	0.56199	41.54	41.215	41.777	0	-0.063421	0.00049371	NaN	37.075	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2240400			24752	3202	17895	18026							-0.08832156843732264
KEYQRLHSL	9	Unmodified	_KEYQRLHSL_					0	0	0			REV__nc|ENSG00000072110|P12814-2|ACTN1	REV__nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	A375_MHC_IP_R2	2	391.93646240234375	3	391.884012	1172.63021	-0.54995	-0.00021552	0.58175	0.00022798	0.031799	1.2461E-05	391.8835581594694	24.672	0.3545	25.316	25.161	25.516	0.64368					9	6	2	0	0	0	0.64945	1	8090	8090		11.518	1.3673	1	1917200	+		24753	16596	17896	18027	24250	24250					0.05079621628897257
KEYQRLHSL	9	Unmodified	_KEYQRLHSL_					0	0	0			REV__nc|ENSG00000072110|P12814-2|ACTN1	REV__nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MATCH	A375_MHC_IP_R1	1		3	391.884012	1172.63021	0.13224	5.1823E-05	0.34647	0.00013578	0.47871	0.0001876	392.218482990505	25.308	0.40892	25.308	25.204	25.613	0	-0.0038563	-6.1115E-05	NaN	11.518	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1296000	+		24754	16596	17896	18027							0.05079621628897257
KEYRKKRKLAQ	11	Unmodified	_KEYRKKRKLAQ_					0	0	0			REV__nc|ENSG00000258469|P59074|CHMP4BP1	REV__nc|ENSG00000258469|P59074|CHMP4BP1	MSMS	A375_MHC_IP_R2	2	724.6808471679688	2	724.446434	1446.87832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.24	1	144.26	143.76	144.76	0.024414								0	0	0	0.16354	1	56347	56347		0.30703	0.30703	1		+		24755	17170	17897	18028	24251	24251					0.17275170216566949
KEYRSSSKY	9	Unmodified	_KEYRSSSKY_					0	0	0			REV__SRSF10|p.G220S|1|0.2|ENSG00000188529|chr1:23971273-23971273|C/T|missense_variant	REV__SRSF10|p.G220S|1|0.2|ENSG00000188529|chr1:23971273-23971273|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	382.6243896484375	3	383.196256	1146.56694	0.15171	5.8133E-05	0.057059	2.1865E-05	0.20877	7.9998E-05	383.1962669323481	24.454	1.4691	24.454	23.635	25.104	0					55	28	2	0	0	0	0.58271	1	7022	7022		14.405	0	1	14178000	+		24756	28047	17898	18029	24252	24252					-0.0004836387897739769
KEYVGIVRL	9	Unmodified	_KEYVGIVRL_					0	0	0		ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1	ENSG00000130826|ENST00000369550|DKC1	ENSG00000130826|ENST00000369550|DKC1	MULTI-MSMS	A375_MHC_IP_R1	1	539.2265625	2	538.826766	1075.63898	-0.68227	-0.00036763	0.3763	0.00020276	-0.30598	-0.00016487	538.8270840246722	54.959	0.40558	54.959	54.72	55.126	0					16	7	3	0	0	0	0.10518	1	19629	19629		53.404	28.005	1	2453300			24757	4287	17899	18030	24253	24253					0.10418595265377917
KEYVGIVRL	9	Unmodified	_KEYVGIVRL_					0	0	0		ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1	ENSG00000130826|ENST00000369550|DKC1	ENSG00000130826|ENST00000369550|DKC1	MULTI-MSMS	A375_MHC_IP_R2	2	539.2261962890625	2	538.826766	1075.63898	-1.238	-0.00066706	1.2014	0.00064736	-0.036567	-1.9703E-05	538.827312285191	53.987	0.51255	54.738	54.454	54.967	0.75105					14	9	2	0	0	0	0.053667	1	20370	20370		76.825	31.125	1	2909000			24758	4287	17899	18030	24254	24254					0.10418595265377917
KFAEPRNKKS	10	Unmodified	_KFAEPRNKKS_					0	0	0		SNX14|p.P330S|1|0.55|ENSG00000135317|chr6:85547322-85547322|G/A|missense_variant	SNX14|p.P330S|1|0.55|ENSG00000135317|chr6:85547322-85547322|G/A|missense_variant	SNX14|p.P330S|1|0.55|ENSG00000135317|chr6:85547322-85547322|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	402.9657897949219	3	402.231412	1203.67241	-0.17136	-6.8925E-05	-0.068028	-2.7363E-05	-0.23938	-9.6288E-05	402.23150421999134	21.129	1.0689	21.129	20.587	21.656	0					68	20	4	0	0	0	0.71267	1	5679	5679		6.6235	0.43161	1	5415900			24759	29214	17900	18031	24255	24255					0.07871597037274114
KFDLLKELYT	10	Unmodified	_KFDLLKELYT_					0	0	0		ENSG00000215251|ENST00000380266|FASTKD5	ENSG00000215251|ENST00000380266|FASTKD5	ENSG00000215251|ENST00000380266|FASTKD5	MULTI-MSMS	A375_MHC_IP_R1	1	424.3077697753906	3	423.907823	1268.70164	0.039423	1.6712E-05	-0.079086	-3.3525E-05	-0.039662	-1.6813E-05	423.90777225525176	88.638	0.45767	88.638	88.409	88.867	0					12	8	2	0	0	0	0.51635	1	32571	32571		27.129	12.172	1	2521000			24760	9641	17901	18032	24256	24256					0.07803696542896432
KFDLLKELYT	10	Unmodified	_KFDLLKELYT_					0	0	0		ENSG00000215251|ENST00000380266|FASTKD5	ENSG00000215251|ENST00000380266|FASTKD5	ENSG00000215251|ENST00000380266|FASTKD5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	423.907823	1268.70164	-0.075129	-3.1848E-05	0.048495	2.0557E-05	-0.026634	-1.129E-05	423.9078655324333	87.889	0.50873	88.621	88.316	88.825	0.7318	-0.0083519	0.00012101	NaN	27.129	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1204600			24761	9641	17901	18032							0.07803696542896432
KFEVHTSETF	10	Unmodified	_KFEVHTSETF_					0	0	0			REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	MULTI-MSMS	A375_MHC_IP_R2	2	409.26800537109375	3	408.868027	1223.58225	0.0087579	3.5808E-06	0.49097	0.00020074	0.49973	0.00020432	408.8679338200541	45.662	0.80767	46.427	46.048	46.855	0.76519					26	15	3	0	0	0	0.69306	1	17071	17071		8.4443	0.49891	1	4121300	+		24762	22759	17902	18033	24257	24257					-0.020594970817910507
KFFLTPVVF	9	Unmodified	_KFFLTPVVF_					0	0	0		ENST00000266069.4_1_20:61576630-61576744:+|nuORF	ENST00000266069.4_1_20:61576630-61576744:+|nuORF	ENST00000266069.4_1_20:61576630-61576744:+|nuORF	MSMS	A375_MHC_IP_R1	1	549.4266967773438	2	549.323328	1096.6321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.895	1	83.895	83.395	84.395	0								0	0	0	0.15486	1	30709	30709		8.5933	0.68312	1				24763	10352	17903	18034	24258	24258					0.08765282384797501
KFGRQLVPGW	10	Unmodified	_KFGRQLVPGW_					0	0	0		ENSG00000152219|ENST00000282032|ARL14EP	ENSG00000152219|ENST00000282032|ARL14EP	ENSG00000152219|ENST00000282032|ARL14EP	MULTI-MSMS	A375_MHC_IP_R2	2	396.9244384765625	3	396.560981	1186.66111	-0.70694	-0.00028035	0.6253	0.00024797	-0.081646	-3.2378E-05	396.56126840866034	53.348	0.5114	54.099	53.842	54.353	0.75105					14	9	2	0	0	0	0.71364	1	20105	20105		6.1918	0	1	1756900			24764	5952	17904	18035	24259	24259					0.07524819733794175
KFHERYIYVTF	11	Unmodified	_KFHERYIYVTF_					0	0	0			REV__ENST00000379638.8_1_5:112214131-112214335:-|nuORF	REV__ENST00000379638.8_1_5:112214131-112214335:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	501.99713134765625	3	501.597871	1501.77178	-0.63028	-0.00031615	-0.58496	-0.00029341	-1.2152	-0.00060956	501.5976569428221	36.515	0.81197	36.515	36.133	36.945	0					50	15	5	0	0	0	0.99921	1	12177	12177		1.3296	0.11481	1	36477000	+		24765	24203	17905	18036	24260	24260					0.04096994931364861
KFHFWLQF	8	Unmodified	_KFHFWLQF_					0	0	0			REV__ENSG00000105298|ENST00000429344|CACTIN	REV__ENSG00000105298|ENST00000429344|CACTIN	MULTI-MSMS	A375_MHC_IP_R2	2	385.26904296875	3	384.871155	1151.59164	-0.13496	-5.194E-05	-1.9017	-0.00073192	-2.0367	-0.00078386	384.87037631327195	32.198	0.7611	32.935	32.401	33.162	0.73692					27	14	2	0	0	0	0.77675	1	11318	11318		6.7232	0.53132	1	11001000	+		24766	17371	17906	18037	24261	24261					0.021903607850390472
KFHSISVIVI	10	Unmodified	_KFHSISVIVI_					0	0	0			REV__ENSG00000146399|ENST00000275216|TAAR1	REV__ENSG00000146399|ENST00000275216|TAAR1	MSMS	A375_MHC_IP_R2	2	381.5888366699219	3	381.569253	1141.68593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.495	1	30.193	29.693	30.693	0.69872								0	0	0	0.15464	1	10302	10302		5.7834	0	1		+		24767	19532	17907	18038	24262	24262					0.12075454816499587
KFHSSQPVQFV	11	Unmodified	_KFHSSQPVQFV_					0	0	0			REV__ZNF445|p.S757F|1|0.38|ENSG00000185219|chr3:44447401-44447401|G/A|missense_variant	REV__ZNF445|p.S757F|1|0.38|ENSG00000185219|chr3:44447401-44447401|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	435.9849548339844	3	435.2313	1302.67207	-0.39593	-0.00017232	-0.2904	-0.00012639	-0.68632	-0.00029871	435.2310519637975	131.05	0.65773	131.05	130.92	131.58	0					15	12	2	0	0	0	0.99778	1	50540	50540		6.2344	0	1	2367500	+		24768	29040	17908	18039	24263	24263					0.03284177317414105
KFIATLQYI	9	Unmodified	_KFIATLQYI_					0	0	0		ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-SECPEP	A375_MHC_IP_R2	2	549.2235717773438	2	548.823692	1095.63283	-0.69242	-0.00038002	0.84895	0.00046592	0.15653	8.5907E-05	548.8240307128601	93.129	0.50777	93.868	93.646	94.154	0.73901					22	9	3	0	0	0	0.23313	1	35415	35415		71.922	19.654	1	3140400			24769	1809	17909	18040	24264	24264					0.0888407703384928
KFINSREI	8	Unmodified	_KFINSREI_					0	0	0			REV__tr|U7T3H1|U7T3H1_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00276PE=3SV=1	REV__tr|U7T3H1|U7T3H1_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00276PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	504.18743896484375	2	503.787641	1005.56073	-0.461	-0.00023225	0.50256	0.00025318	0.041556	2.0936E-05	503.7876515288236	43.954	0.40359	44.723	44.48	44.883	0.76909					13	7	3	0	0	0	0.93661	1	16412	16412		15.847	5.0233	1	3532700	+		24770	28772	17910	18041	24265	24265					0.05817162680148158
KFIPRKPVL	9	Unmodified	_KFIPRKPVL_					0	0	0		NFU1|p.G77R|1|0.3|ENSG00000169599|chr2:69423655-69423655|C/T|missense_variant	NFU1|p.G77R|1|0.3|ENSG00000169599|chr2:69423655-69423655|C/T|missense_variant	NFU1|p.G77R|1|0.3|ENSG00000169599|chr2:69423655-69423655|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	366.6291809082031	3	366.577972	1096.71209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.265	1	50.265	49.765	50.765	0								0	0	0	0.15486	1	17803	17803		8.1555	1.0538	1				24771	14992	17911	18042	24266	24266					0.16759768778638318
KFIPRKPVL	9	Unmodified	_KFIPRKPVL_					0	0	0		NFU1|p.G77R|1|0.3|ENSG00000169599|chr2:69423655-69423655|C/T|missense_variant	NFU1|p.G77R|1|0.3|ENSG00000169599|chr2:69423655-69423655|C/T|missense_variant	NFU1|p.G77R|1|0.3|ENSG00000169599|chr2:69423655-69423655|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	366.6449890136719	3	366.577972	1096.71209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.306	1	43.079	42.579	43.579	0.7724								0	0	0	0.15486	1	15736	15736		12.241	3.4953	1				24772	14992	17911	18042	24267	24267					0.16759768778638318
KFIRRKYSIKN	11	Unmodified	_KFIRRKYSIKN_					0	0	0		tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	485.3640441894531	3	484.964777	1451.8725	-0.71613	-0.0003473	-0.5204	-0.00025238	-1.2365	-0.00059967	484.9645147679153	40.526	0.50779	41.301	41.082	41.59	0.77451					28	9	4	0	0	0	0.73715	1	15017	15017		2.084	0.62885	1	5782100			24773	29538	17912	18043	24268	24268					0.16464071704876915
KFKEFVQSV	9	Unmodified	_KFKEFVQSV_					0	0	0		ARL4D|p.E111Gfs*37|1|0.15|ENSG00000175906|chr17:43400060-43400061|-/A|frameshift_variant;ENSG00000175906|ENST00000320033|ARL4D	ARL4D|p.E111Gfs*37|1|0.15|ENSG00000175906|chr17:43400060-43400061|-/A|frameshift_variant	ARL4D|p.E111Gfs*37|1|0.15|ENSG00000175906|chr17:43400060-43400061|-/A|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	555.7214965820312	2	556.310949	1110.60735	-0.61307	-0.00034106	0.10521	5.853E-05	-0.50786	-0.00028253	556.3109767867143	110.36	1.2761	111.1	110.73	112.01	0.73692					53	24	4	0	0	0	0.59614	1	41733	41733		18.146	0	1	8479600			24774	179	17913	18044	24269	24269					0.0564660251143323
KFKKKKPGLL	10	Unmodified	_KFKKKKPGLL_					0	0	0			REV__ENSG00000128908|ENST00000648947|INO80	REV__ENSG00000128908|ENST00000648947|INO80	MSMS	A375_MHC_IP_R2	2	593.786376953125	2	593.905351	1185.79615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.69	1	115.38	114.88	115.88	0.68999								0	0	0	0.15628	1	43231	43231		0.45834	0	1		+		24775	18474	17914	18045	24270	24270					0.21068299875560115
KFKRQYGK	8	Unmodified	_KFKRQYGK_					0	0	0		nc|ENSG00000119684|Q9UHC1-2|MLH3;ENSG00000119684|ENST00000355774|MLH3	nc|ENSG00000119684|Q9UHC1-2|MLH3	nc|ENSG00000119684|Q9UHC1-2|MLH3	MULTI-SECPEP	A375_MHC_IP_R1	1	352.9814758300781	3	352.210059	1053.60835	-0.34822	-0.00012265	0.55635	0.00019595	0.20813	7.3304E-05	352.2101004681569	32.721	0.50489	32.721	32.535	33.04	0					11	9	2	0	0	0	0.972	1	10541	10541		6.2058	0	1	1140200			24776	3610	17915	18046	24271	24271					0.08368861670987826
KFLALQRIH	9	Unmodified	_KFLALQRIH_					0	0	0		ENST00000582436.5_1_17:27237055-27251401:-|nuORF;nc|ENSG00000109118|Q96QT6-5|PHF12;nc|ENSG00000109118|Q96QT6-3|PHF12;ENSG00000109118|ENST00000332830|PHF12;nc|ENSG00000109118|Q96QT6-4|PHF12	ENST00000582436.5_1_17:27237055-27251401:-|nuORF	ENST00000582436.5_1_17:27237055-27251401:-|nuORF	MSMS	A375_MHC_IP_R2	2	375.9292907714844	3	375.901226	1124.68185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.988	1	19.591	19.091	20.091	0.60308								0	0	0	0.15486	1	5743	5743		4.5289	0.65253	1				24777	2859	17916	18047	24272	24272					0.12449410113458725
KFLEHKIT	8	Unmodified	_KFLEHKIT_					0	0	0			REV__ENSG00000121879|ENST00000263967|PIK3CA	REV__ENSG00000121879|ENST00000263967|PIK3CA	MULTI-SECPEP	A375_MHC_IP_R1	1	507.70281982421875	2	508.300384	1014.58622	-0.41585	-0.00021138	0.74023	0.00037626	0.32437	0.00016488	508.30075523572384	47.368	0.61109	47.368	47.107	47.718	0					20	11	3	0	0	0	0.97021	1	16691	16691		6.7232	0	1	4676300	+		24778	18174	17917	18048	24273	24273					0.07950637202554844
KFLKKLNHREL	11	Unmodified	_KFLKKLNHREL_					0	0	0		ENST00000377325.1_1_6:28056349-28056487:+|nuORF	ENST00000377325.1_1_6:28056349-28056487:+|nuORF	ENST00000377325.1_1_6:28056349-28056487:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	475.6530456542969	3	475.961144	1424.8616	-0.48012	-0.00022852	0.059995	2.8555E-05	-0.42013	-0.00019996	476.29533237386323	88.149	1.017	88.149	87.798	88.815	0					23	19	2	0	0	0	0.73781	1	32393	32393		1.4551	0.12547	1	1039700			24779	11295	17918	18049	24274	24274					0.1661666933057404
KFLKKLNHREL	11	Unmodified	_KFLKKLNHREL_					0	0	0		ENST00000377325.1_1_6:28056349-28056487:+|nuORF	ENST00000377325.1_1_6:28056349-28056487:+|nuORF	ENST00000377325.1_1_6:28056349-28056487:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	475.961144	1424.8616	-0.48012	-0.00022852	0.059995	2.8555E-05	-0.42013	-0.00019996	476.29533237386323	88.149	1.017	88.149	87.798	88.815	0	0	0	NaN	1.4551	23	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1039700			24780	11295	17918	18049							0.1661666933057404
KFLKQVEKF	9	Unmodified	_KFLKQVEKF_					0	0	0			REV__nc|ENSG00000168234|Q8N584-2|TTC39C	REV__nc|ENSG00000168234|Q8N584-2|TTC39C	MULTI-MSMS	A375_MHC_IP_R1	1	389.9693298339844	3	389.569253	1165.68593	0.1702	6.6303E-05	0.22195	8.6465E-05	0.39215	0.00015277	389.5692916198549	40.262	0.66165	40.262	39.999	40.66	0					23	12	3	0	0	0	0.31062	1	13823	13823		29.841	11.467	1	5008300	+		24781	20834	17919	18050	24275	24275					0.1097145481651296
KFLKQVEKF	9	Unmodified	_KFLKQVEKF_					0	0	0			REV__nc|ENSG00000168234|Q8N584-2|TTC39C	REV__nc|ENSG00000168234|Q8N584-2|TTC39C	MULTI-MSMS	A375_MHC_IP_R2	2	389.9693298339844	3	389.569253	1165.68593	-0.33332	-0.00012985	0.42788	0.00016669	0.094559	3.6837E-05	389.5693360795351	39.131	0.56121	39.905	39.607	40.169	0.77451					26	10	4	0	0	0	0.2415	1	14418	14418		34.932	15.57	1	5297000	+		24782	20834	17919	18050	24276	24276					0.1097145481651296
KFLKQVEKF	9	Unmodified	_KFLKQVEKF_					0	0	0			REV__nc|ENSG00000168234|Q8N584-2|TTC39C	REV__nc|ENSG00000168234|Q8N584-2|TTC39C	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	389.569253	1165.68593	0.1702	6.6303E-05	0.22195	8.6465E-05	0.39215	0.00015277	389.5692916198549	40.262	0.66165	40.262	39.999	40.66	0	0.17826	-8.4476E-05	NaN	34.932	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5008300	+		24783	20834	17919	18050							0.1097145481651296
KFLPNLWWFFV	11	Unmodified	_KFLPNLWWFFV_					0	0	0			REV__nc|ENSG00000125257|O15439-4|ABCC4	REV__nc|ENSG00000125257|O15439-4|ABCC4	MULTI-SECPEP	A375_MHC_IP_R2	2	499.1631774902344	3	499.607819	1495.80163	-0.47619	-0.00023791	0.61295	0.00030623	0.13676	6.8325E-05	499.6080867499093	133.41	1.4239	133.58	132.94	134.37	0.16487					31	27	2	0	0	0	0.99999	1	52715	52715		3.0723	1.6171	1	2423200	+		24784	18332	17920	18051	24277	24277					0.07355978667351337
KFLPSELRDEH	11	Unmodified	_KFLPSELRDEH_					0	0	0		nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	MULTI-SECPEP	A375_MHC_IP_R1	1	458.1456298828125	3	457.573614	1369.69901	-0.26832	-0.00012278	0.26704	0.00012219	-0.0012844	-5.8771E-07	457.5735474577501	34.657	0.30278	34.657	34.456	34.759	0					10	5	2	0	0	0	0.98921	1	11474	11474		15.467	10.419	1	2249200			24785	4857	17921	18052	24278	24278					0.02895241137935045
KFLRFQTI	8	Unmodified	_KFLRFQTI_					0	0	0			REV__ENSG00000147654|ENST00000337573|EBAG9	REV__ENSG00000147654|ENST00000337573|EBAG9	MSMS	A375_MHC_IP_R2	2	526.7140502929688	2	526.816202	1051.61785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.18	1	113.89	113.39	114.39	0.70985								0	0	0	0.16876	1	42674	42674		18.135	1.1927	1		+		24786	19602	17922	18053	24279	24279					0.09410629956505545
KFNKVNLSF	9	Unmodified	_KFNKVNLSF_					0	0	0		TEKT3|p.Q339K|1|0.24|ENSG00000125409|chr17:15312345-15312345|G/T|missense_variant	TEKT3|p.Q339K|1|0.24|ENSG00000125409|chr17:15312345-15312345|G/T|missense_variant	TEKT3|p.Q339K|1|0.24|ENSG00000125409|chr17:15312345-15312345|G/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6760864257812	2	548.811116	1095.60768	-0.77399	-0.00042477	-0.052493	-2.8809E-05	-0.82648	-0.00045358	548.8110550018057	76.288	0.5584	77.029	76.64	77.199	0.74052					17	10	2	0	0	0	0.54812	1	28889	28889		10.074	0	1	1523000			24787	29320	17923	18054	24280	24280					0.06370022231271832
KFPLESRKL	9	Unmodified	_KFPLESRKL_					0	0	0		nc|ENSG00000050438|Q2Y0W8-5|SLC4A8;ENSG00000050438|ENST00000453097|SLC4A8	nc|ENSG00000050438|Q2Y0W8-5|SLC4A8	nc|ENSG00000050438|Q2Y0W8-5|SLC4A8	MULTI-MSMS	A375_MHC_IP_R1	1	373.9575500488281	3	373.229119	1116.66553	0.15158	5.6575E-05	-0.34356	-0.00012823	-0.19198	-7.1651E-05	373.22863650037715	24.314	0.60635	24.314	23.991	24.597	0					21	11	3	0	0	0	0.6656	1	6815	6815		6.6304	2.4409	1	3514700			24788	1231	17924	18055	24281	24281					0.11186284156724469
KFPLIILLKDL	11	Unmodified	_KFPLIILLKDL_					0	0	0			REV__GPR155|p.H716L|1|0.12|ENSG00000163328|chr2:174442146-174442146|T/A|missense_variant	REV__GPR155|p.H716L|1|0.12|ENSG00000163328|chr2:174442146-174442146|T/A|missense_variant	MSMS	A375_MHC_IP_R1	1	657.0036010742188	2	656.933774	1311.853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.595	1	85.595	85.095	86.095	0								0	0	0	0.16316	1	31371	31371		2.2828	0.19677	1		+		24789	26699	17925	18056	24282	24282					0.2095430264141669
KFPLIILLKDL	11	Unmodified	_KFPLIILLKDL_					0	0	0			REV__GPR155|p.H716L|1|0.12|ENSG00000163328|chr2:174442146-174442146|T/A|missense_variant	REV__GPR155|p.H716L|1|0.12|ENSG00000163328|chr2:174442146-174442146|T/A|missense_variant	MSMS	A375_MHC_IP_R2	2	657.0025024414062	2	656.933774	1311.853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.708	1	84.448	83.948	84.948	0.73962								0	0	0	0.16316	1	31818	31818		2.2828	0.80087	1		+		24790	26699	17925	18056	24283	24283					0.2095430264141669
KFPRFLLYL	9	Unmodified	_KFPRFLLYL_					0	0	0			REV__RBPMS|p.E39G|1|0.27|ENSG00000157110|chr8:30474828-30474828|A/G|missense_variant	REV__RBPMS|p.E39G|1|0.27|ENSG00000157110|chr8:30474828-30474828|A/G|missense_variant	MSMS	A375_MHC_IP_R1	1	399.63616943359375	3	399.57786	1195.71175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.173	1	32.173	31.673	32.673	0								0	0	0	0.15486	1	10371	10371		5.2969	0.39987	1		+		24791	20014	17926	18057	24284	24284					0.12172349058801046
KFQLKNKKI	9	Unmodified	_KFQLKNKKI_					0	0	0		tr|U7SSR9|U7SSR9_FUSNUMPNdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01550PE=4SV=1	tr|U7SSR9|U7SSR9_FUSNUMPNdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01550PE=4SV=1	tr|U7SSR9|U7SSR9_FUSNUMPNdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01550PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	383.5711975097656	3	382.916764	1145.72846	-0.32117	-0.00012298	0.12193	4.6691E-05	-0.19924	-7.6292E-05	382.9168115708809	41.247	0.25381	42.022	41.895	42.149	0.77451					8	4	2	0	0	0	0.80535	1	15263	15263		2.2828	0	1	1364300			24792	29648	17927	18058	24285	24285					0.16142849944753834
KFQTILEGIY	10	Unmodified	_KFQTILEGIY_					0	0	0		tr|U7SQS7|U7SQS7_FUSNUATPsynthasesubunitaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpBPE=3SV=1	tr|U7SQS7|U7SQS7_FUSNUATPsynthasesubunitaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpBPE=3SV=1	tr|U7SQS7|U7SQS7_FUSNUATPsynthasesubunitaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpBPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	404.96063232421875	3	404.560535	1210.65977	-0.56278	-0.00022768	1.0552	0.00042691	0.49247	0.00019923	404.5607688915739	65.499	0.56129	65.499	65.156	65.717	0					22	10	3	0	0	0	0.71076	1	23743	23743		7.4771	2.0744	1	1612600			24793	29595	17928	18059	24286	24286					0.06287140854419704
KFRGGNRTHSQ	11	Unmodified	_KFRGGNRTHSQ_					0	0	0		TRPV5|p.R363Q|1|0.34|ENSG00000127412|chr7:142925563-142925563|C/T|missense_variant	TRPV5|p.R363Q|1|0.34|ENSG00000127412|chr7:142925563-142925563|C/T|missense_variant	TRPV5|p.R363Q|1|0.34|ENSG00000127412|chr7:142925563-142925563|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	429.9482727050781	3	429.893681	1286.65921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.585	1	20.585	20.085	21.085	0								0	0	0	0.1628	1	5306	5306		4.1166	1.0444	1				24794	30082	17929	18060	24287	24287					0.027351589779073038
KFRGVEFVC	9	Unmodified	_KFRGVEFVC_					0	0	0		nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-2|APP;ENST00000474136.5_1_21:27382178-27543016:-|nuORF	nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MSMS	A375_MHC_IP_R2	2	362.59124755859375	3	362.191788	1083.55354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.92	1	108.68	108.18	109.18	0.75436								0	0	0	0.15486	1	40762	40762		1.1933	0	1				24795	14649;5293	17930	18061	24288	24288					0.01510106808063938
KFRKRKRKAIL	11	Unmodified	_KFRKRKRKAIL_					0	0	0		ENSG00000206559|ENST00000383768|ZCWPW2	ENSG00000206559|ENST00000383768|ZCWPW2	ENSG00000206559|ENST00000383768|ZCWPW2	MSMS	A375_MHC_IP_R2	2	722.2752075195312	2	722.490979	1442.96741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.49	1	109.24	108.74	109.74	0.75436								0	0	0	0.1636	1	40963	40963		0	0	1				24796	9543	17931	18062	24289	24289					0.2636404996674173
KFRLSRRRRRN	11	Unmodified	_KFRLSRRRRRN_					0	0	0		ENSG00000145416|ENST00000514618|MARCHF1	ENSG00000145416|ENST00000514618|MARCHF1	ENSG00000145416|ENST00000514618|MARCHF1	MULTI-MSMS	A375_MHC_IP_R2	2	773.3786010742188	2	772.97709	1543.93963	-0.74953	-0.00057937	1.8129	0.0014014	1.0634	0.00082199	772.9790109915348	142.6	0.30627	142.63	142.43	142.74	0.030746					7	5	2	0	0	0	0.73934	1	55771	55771		0	0	1	893410			24797	5558	17932	18063	24290	24290					0.18941539759202897
KFRLSRRRRRN	11	Unmodified	_KFRLSRRRRRN_					0	0	0		ENSG00000145416|ENST00000514618|MARCHF1	ENSG00000145416|ENST00000514618|MARCHF1	ENSG00000145416|ENST00000514618|MARCHF1	MSMS	A375_MHC_IP_R2	2	773.2247314453125	2	772.97709	1543.93963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.31	1	123.68	123.18	124.18	0.3766								0	0	0	0.1636	1	47358	47358		0	0	1				24798	5558	17932	18063	24291	24291					0.18941539759202897
KFRLSRRRRRN	11	Unmodified	_KFRLSRRRRRN_					0	0	0		ENSG00000145416|ENST00000514618|MARCHF1	ENSG00000145416|ENST00000514618|MARCHF1	ENSG00000145416|ENST00000514618|MARCHF1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	772.97709	1543.93963	-0.82695	-0.00063921	2.4347	0.0018819	1.6077	0.0012427	773.4801502195802	142.61	0.25339	142.61	142.44	142.69	0	-0.0091824	4.5443E-05	NaN	0	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1584600			24799	5558	17932	18063							0.18941539759202897
KFRRYLYHLYW	11	Unmodified	_KFRRYLYHLYW_					0	0	0		CX3CR1|p.G309W|1|0.34|ENSG00000168329|chr3:39265585-39265585|C/A|missense_variant	CX3CR1|p.G309W|1|0.34|ENSG00000168329|chr3:39265585-39265585|C/A|missense_variant	CX3CR1|p.G309W|1|0.34|ENSG00000168329|chr3:39265585-39265585|C/A|missense_variant	MSMS	A375_MHC_IP_R1	1	822.9437255859375	2	822.943528	1643.8725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.21	1	107.21	106.71	107.71	0								0	0	0	0.1636	1	39342	39342		0	0	1				24800	687	17933	18064	24292	24292					0.07632071704915688
KFRYLERLLIL	11	Unmodified	_KFRYLERLLIL_					0	0	0		ENST00000555815.5_1_15:25924490-25961922:-|nuORF;ENSG00000206190|ENST00000555815|ATP10A	ENST00000555815.5_1_15:25924490-25961922:-|nuORF	ENST00000555815.5_1_15:25924490-25961922:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	365.93658447265625	4	366.732878	1462.90241	-0.12772	-4.684E-05	2.3379	0.0008574	2.2102	0.00081056	366.73273384188326	54.31	0.30339	55.06	54.916	55.219	0.75075					8	5	3	0	0	0	1.001	1	20470	20470		0.50596	0.051438	1	611660			24801	9537	17934	18065	24293	24293					0.18947010650231277
KFSHNIFHR	9	Unmodified	_KFSHNIFHR_					0	0	0			REV__ENST00000510413.5_2_4:151774087-151788865:-|nuORF	REV__ENST00000510413.5_2_4:151774087-151788865:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	396.5935363769531	3	395.880713	1184.62031	-0.45804	-0.00018133	0.21622	8.5598E-05	-0.24182	-9.573E-05	395.8808308236226	20.705	1.0128	21.316	20.907	21.919	0.61029					55	19	4	0	0	0	0.58268	1	6592	6592		15.739	15.739	1	12842000	+		24802	25602	17935	18066	24294	24294					0.03538478414156998
KFSRYWRRWNR	11	Unmodified	_KFSRYWRRWNR_					0	0	0		nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;CACNA1C|p.P1597Qfs*32|1|0.14|ENSG00000151067|chr12:2668954-2668961|CCTCTGAA/-|frameshift_variant	nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	MSMS	A375_MHC_IP_R1	1	827.9412231445312	2	827.944924	1653.8753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.954	1	85.954	85.454	86.454	0								0	0	0	0.16354	1	31508	31508		0.30703	0.30703	1				24803	5876	17936	18067	24295	24295					0.07451339882391039
KFVCPGINV	9	Unmodified	_KFVCPGINV_					0	0	0		ENSG00000101216|ENST00000370077|GMEB2;ENSG00000162419|ENST00000373816|GMEB1;nc|ENSG00000162419|Q9Y692|GMEB1	ENSG00000101216|ENST00000370077|GMEB2;ENSG00000162419|ENST00000373816|GMEB1	ENSG00000101216|ENST00000370077|GMEB2	MULTI-MSMS	A375_MHC_IP_R1	1	489.1822204589844	2	488.767863	975.521173	-0.60898	-0.00029765	0.68822	0.00033638	0.079242	3.8731E-05	488.7681835874549	67.536	0.5629	67.536	67.04	67.603	0					16	10	2	0	0	0	0.64808	1	24434	24434		11.64	0.14559	1	2000000			24804	2272;6532	17937	18068	24296	24296					0.032433194050668135
KGAFWYRNCHR	11	Unmodified	_KGAFWYRNCHR_					0	0	0		nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC	nc|ENSG00000041982|P24821-6|TNC	nc|ENSG00000041982|P24821-6|TNC	MULTI-MSMS	A375_MHC_IP_R2	2	479.980224609375	3	479.903412	1436.68841	-0.82866	-0.00039768	0.83639	0.00040139	0.0077374	3.7132E-06	479.904090872093	19.076	0.29975	19.679	19.483	19.783	0.60308					8	5	2	0	0	0	0.73886	1	5637	5637		0.45452	0.046251	1	3211900			24805	1171	17938	18069	24297	24297					-0.012470199974814022
KGAGAGSL	8	Unmodified	_KGAGAGSL_					0	0	0			REV__nc|ENSG00000184507|Q86Y26-2|NUTM1	REV__nc|ENSG00000184507|Q86Y26-2|NUTM1	MULTI-MSMS	A375_MHC_IP_R1	1	661.0010986328125	1	660.367515	659.360239	-0.59572	-0.00039339	-0.88489	-0.00058436	-1.4806	-0.00097775	660.3713671554549	87.237	0.15446	87.237	87.134	87.289	0					4	2	2	0	0	0	0.77488	1	31986	31986		13.508	4.1604	1	647810	+		24806	21823	17939	18070	24298	24298					0.016933130833308496
KGAGGGCG	8	Unmodified	_KGAGGGCG_					0	0	0			REV__ENST00000480362.5_1_13:115047204-115067220:+|nuORF	REV__ENST00000480362.5_1_13:115047204-115067220:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	606.7263793945312	1	606.266421	605.259145	-0.28413	-0.00017226	1.3707	0.00083101	1.0866	0.00065875	606.2668551353468	104.63	1.1169	104.63	104.03	105.15	0					30	21	2	0	0	0	0.972	1	38548	38548		0	0	1	1217300	+		24807	20902	17940	18071	24299	24299					-0.059274618910194476
KGAGGGCG	8	Unmodified	_KGAGGGCG_					0	0	0			REV__ENST00000480362.5_1_13:115047204-115067220:+|nuORF	REV__ENST00000480362.5_1_13:115047204-115067220:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	606.4331665039062	1	606.266421	605.259145	-0.2229	-0.00013514	0.19637	0.00011905	-0.026533	-1.6086E-05	606.2662274009867	142.72	1.3655	142.75	142.53	143.9	0.030731					30	26	2	0	0	0	0.972	1	55975	55975		0	0	1	984450	+		24808	20902	17940	18071	24300	24300					-0.059274618910194476
KGAGKIFH	8	Unmodified	_KGAGKIFH_					0	0	0			REV__nc|ENSG00000097007|P00519-2|ABL1	REV__nc|ENSG00000097007|P00519-2|ABL1	MULTI-MSMS	A375_MHC_IP_R1	1	429.2911682128906	2	429.253237	856.491922	-0.07474	-3.2082E-05	-0.62559	-0.00026853	-0.70033	-0.00030062	429.2524901191418	51.103	0.55805	51.103	50.764	51.322	0					20	10	3	0	0	0	0.77781	1	18038	18038		2.8892	0	1	1699200	+		24809	27139	17941	18072	24301	24301					0.05793543171080273
KGAGKIFH	8	Unmodified	_KGAGKIFH_					0	0	0			REV__nc|ENSG00000097007|P00519-2|ABL1	REV__nc|ENSG00000097007|P00519-2|ABL1	MULTI-SECPEP	A375_MHC_IP_R1	1	428.60357666015625	2	429.253237	856.491922	-0.07474	-3.2082E-05	-0.62559	-0.00026853	-0.70033	-0.00030062	429.2524901191418	51.103	0.55805	51.103	50.764	51.322	0					20	10	3	0	0	0	0.972	1	18029	18029		0.79363	0	1	1699200	+		24810	27139	17941	18072	24302	24302					0.05793543171080273
KGAITLTI	8	Unmodified	_KGAITLTI_					0	0	0		MC2R|p.M215I|1|0.68|ENSG00000185231|chr18:13884874-13884874|C/T|missense_variant;ENSG00000185231|ENST00000327606|MC2R;ENSG00000166603|ENST00000299766|MC4R	MC2R|p.M215I|1|0.68|ENSG00000185231|chr18:13884874-13884874|C/T|missense_variant	MC2R|p.M215I|1|0.68|ENSG00000185231|chr18:13884874-13884874|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	409.1630859375	2	408.763104	815.511654	-0.13036	-5.3284E-05	0.16198	6.6213E-05	0.031628	1.2928E-05	408.7631232744522	60.68	0.55956	60.68	60.363	60.922	0					18	10	2	0	0	0	0.46048	1	21831	21831		46.021	0	1	2741700			24811	7096	17942	18073	24303	24303					0.09651874391192905
KGAKGVPV	8	Unmodified	_KGAKGVPV_					0	0	0			REV__ENSG00000136449|ENST00000323776|MYCBPAP	REV__ENSG00000136449|ENST00000323776|MYCBPAP	MULTI-MSMS	A375_MHC_IP_R2	2	378.64208984375	2	378.242338	754.470124	-0.27063	-0.00010236	-0.082507	-3.1208E-05	-0.35314	-0.00013357	378.24218488352034	59.146	0.65858	59.893	59.489	60.148	0.74714					27	12	3	0	0	0	0.7758	1	22347	22347		10.183	0.83596	1	1853000	+		24812	18937	17943	18074	24304	24304					0.08306738422515991
KGAKRKGI	8	Unmodified	_KGAKRKGI_					0	0	0		ENSG00000143847|ENST00000295706|PPFIA4;nc|ENSG00000143847|O75335|PPFIA4;nc|ENSG00000143847|O75335-2|PPFIA4;nc|ENSG00000143847|O75335-1|PPFIA4	ENSG00000143847|ENST00000295706|PPFIA4	ENSG00000143847|ENST00000295706|PPFIA4	MSMS	A375_MHC_IP_R2	2	429.29119873046875	2	429.287611	856.56067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.84	1	139.9	139.4	140.4	0.059906								0	0	0	0.16876	1	54768	54768		0.69038	0	1				24813	5441	17944	18075	24305	24305					0.12665207470809037
KGARAPSH	8	Unmodified	_KGARAPSH_					0	0	0			REV__ENSG00000175197|ENST00000346473|DDIT3	REV__ENSG00000175197|ENST00000346473|DDIT3	MULTI-MSMS	A375_MHC_IP_R1	1	412.63037109375	2	412.230294	822.446034	0.23648	9.7485E-05	0.48394	0.0001995	0.72042	0.00029698	412.2302820301609	104.76	5.3454	104.76	102.76	108.1	0					222	104	4	0	0	0	0.77804	4	38487	38487;38893;39290;39498		2.0598	0	1	16314000	+		24814	21329	17945	18076	24306;24307;24308;24309	24306					0.02770897988852994
KGARAPSH	8	Unmodified	_KGARAPSH_					0	0	0			REV__ENSG00000175197|ENST00000346473|DDIT3	REV__ENSG00000175197|ENST00000346473|DDIT3	MULTI-MSMS	A375_MHC_IP_R1	1	412.6302795410156	2	412.230294	822.446034	0.3991	0.00016452	-0.035781	-1.475E-05	0.36332	0.00014977	412.2302209076744	109.21	2.6433	109.21	108.1	110.75	0					120	51	3	0	0	0	0.77804	1	40343	40343		2.0598	0	1	8592800	+		24815	21329	17945	18076	24310	24310					0.02770897988852994
KGARAPSH	8	Unmodified	_KGARAPSH_					0	0	0			REV__ENSG00000175197|ENST00000346473|DDIT3	REV__ENSG00000175197|ENST00000346473|DDIT3	MULTI-SECPEP	A375_MHC_IP_R1	1	823.8538818359375	1	823.453311	822.446034	-0.13568	-0.00011173	-1.0608	-0.00087353	-1.1965	-0.00098526	823.4533879046402	109.09	1.8801	109.09	108.05	109.93	0					52	36	2	0	0	0	0.972	1	40282	40282		4.3292	0	1	1746000	+		24816	21329	17945	18076	24311	24311					0.02770897988852994
KGARAPSH	8	Unmodified	_KGARAPSH_					0	0	0			REV__ENSG00000175197|ENST00000346473|DDIT3	REV__ENSG00000175197|ENST00000346473|DDIT3	MULTI-MSMS	A375_MHC_IP_R2	2	412.6302185058594	2	412.230294	822.446034	0.05977	2.4639E-05	0.089698	3.6976E-05	0.14947	6.1615E-05	412.2302615784873	108.61	2.8049	109.36	108.29	111.1	0.74683					139	54	4	0	0	0	0.77804	1	41239	41239		2.0598	0	1	9664800	+		24817	21329	17945	18076	24312	24312					0.02770897988852994
KGCGCGCG	8	Unmodified	_KGCGCGCG_					0	0	0			REV__nc|ENSG00000284725|A0A286YF77|SCYGR6	REV__nc|ENSG00000284725|A0A286YF77|SCYGR6	MULTI-MSMS	A375_MHC_IP_R2	2	685.288330078125	1	684.226212	683.218936	-0.91969	-0.00062928	-0.90609	-0.00061997	-1.8258	-0.0012492	684.2269195753577	6.101	0.80814	6.5161	5.8925	6.7006	0.4151					145	103	2	0	0	0	0.77861	1	1759	1759		0	0	1	422880	+		24818	27550	17946	18077	24313	24313					-0.13534467877457246
KGCGCGCG	8	Unmodified	_KGCGCGCG_					0	0	0			REV__nc|ENSG00000284725|A0A286YF77|SCYGR6	REV__nc|ENSG00000284725|A0A286YF77|SCYGR6	MULTI-SECPEP	A375_MHC_IP_R2	2	684.5120849609375	1	684.226212	683.218936	-0.91969	-0.00062928	-0.90609	-0.00061997	-1.8258	-0.0012492	684.2269195753577	6.101	0.80814	6.5161	5.8925	6.7006	0.4151					145	103	2	0	0	0	0.972	1	1952	1952		0	0	1	422880	+		24819	27550	17946	18077	24314	24314					-0.13534467877457246
KGDIFHSLHS	10	Unmodified	_KGDIFHSLHS_					0	0	0			REV__PRDM14|p.G309S|1|0.11|ENSG00000147596|chr8:70066493-70066493|C/T|missense_variant	REV__PRDM14|p.G309S|1|0.11|ENSG00000147596|chr8:70066493-70066493|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	381.26470947265625	3	380.864729	1139.57236	0.036401	1.3864E-05	-0.74451	-0.00028356	-0.70811	-0.00026969	380.86441112770365	83.623	0.66613	84.362	84.049	84.715	0.73962					27	12	3	0	0	0	0.70442	1	31757	31757		10.315	0.55098	1	3572300	+		24820	27835	17947	18078	24315	24315					0.008153597034606719
KGDIFHSLHS	10	Unmodified	_KGDIFHSLHS_					0	0	0			REV__PRDM14|p.G309S|1|0.11|ENSG00000147596|chr8:70066493-70066493|C/T|missense_variant	REV__PRDM14|p.G309S|1|0.11|ENSG00000147596|chr8:70066493-70066493|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	380.864729	1139.57236	0.14396	5.4831E-05	-0.55199	-0.00021023	-0.40803	-0.0001554	380.864493178804	84.429	0.60677	84.429	84.091	84.697	0	0.033487	0.00010936	NaN	10.315	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3511200	+		24821	27835	17947	18078							0.008153597034606719
KGDIFHSLHS	10	Unmodified	_KGDIFHSLHS_					0	0	0			REV__PRDM14|p.G309S|1|0.11|ENSG00000147596|chr8:70066493-70066493|C/T|missense_variant	REV__PRDM14|p.G309S|1|0.11|ENSG00000147596|chr8:70066493-70066493|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	380.864729	1139.57236	0.036401	1.3864E-05	-0.74451	-0.00028356	-0.70811	-0.00026969	380.86441112770365	83.623	0.66613	84.362	84.049	84.715	0.73962	-0.033487	-0.00011061	NaN	10.315	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3572300	+		24822	27835	17947	18078							0.008153597034606719
KGELLCHL	8	Unmodified	_KGELLCHL_					0	0	0		nc|ENSG00000133739|Q9C099-2|LRRCC1;ENSG00000133739|ENST00000360375|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	MSMS	A375_MHC_IP_R2	2	456.69256591796875	2	456.752213	911.489873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.951	1	41.726	41.226	42.226	0.77451								0	0	0	0.16876	1	15180	15180		8.5933	0	1				24823	4528	17948	18079	24316	24316					0.03058746370948029
KGENEAQFF	9	Unmodified	_KGENEAQFF_					0	0	0			REV__ENST00000426231.5_2_X:153641633-153647973:+|nuORF	REV__ENST00000426231.5_2_X:153641633-153647973:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	535.6497192382812	2	535.251089	1068.48762	-0.60761	-0.00032522	-0.12516	-6.6993E-05	-0.73277	-0.00039222	535.2510401475835	112.46	0.5592	113.19	112.92	113.48	0.72458					19	10	2	0	0	0	0.38603	1	42390	42390		25.399	0	1	4463600	+		24824	17208	17949	18080	24317	24317					-0.043880108331450174
KGENNLRPRKK	11	Unmodified	_KGENNLRPRKK_					0	0	0		nc|ENSG00000152942|O75943-3|RAD17;nc|ENSG00000152942|O75943-4|RAD17;RAD17|p.G630Vfs*16|1|0.3|ENSG00000152942|chr5:69414133-69414133|G/-|frameshift_variant;ENSG00000152942|ENST00000354868|RAD17;nc|ENSG00000152942|O75943|RAD17	nc|ENSG00000152942|O75943-3|RAD17	nc|ENSG00000152942|O75943-3|RAD17	MULTI-SECPEP	A375_MHC_IP_R1	1	448.0291442871094	3	447.268748	1338.78442	-0.44015	-0.00019687	0.98504	0.00044058	0.54488	0.00024371	447.26937837015134	142.72	0.1523	142.72	142.64	142.79	0					4	2	2	0	0	0	1.0015	1	54743	54743		0.40827	0.34386	1	2225300			24825	5991	17950	18081	24318	24318					0.12857451114246032
KGEWEQLGEY	10	Unmodified	_KGEWEQLGEY_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-MSMS	A375_MHC_IP_R1	1	618.7295532226562	2	619.788035	1237.56152	-0.38654	-0.00023958	0.7809	0.00048399	0.39435	0.00024442	619.7878019335083	73.155	1.0642	73.155	72.728	73.792	0					28	16	3	0	0	0	0.70012	1	26875	26875		12.241	0.60036	1	1841800	+		24826	16825	17951	18082	24319	24319					-0.047760874614596105
KGFALVGV	8	Unmodified	_KGFALVGV_					0	0	0		ENST00000547486.1_1_12:69645004-69651771:+|nuORF;nc|ENSG00000111605|Q16630-3|CPSF6;ENSG00000111605|ENST00000435070|CPSF6;nc|ENSG00000111605|Q16630-2|CPSF6	ENST00000547486.1_1_12:69645004-69651771:+|nuORF	ENST00000547486.1_1_12:69645004-69651771:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	396.14447021484375	2	395.744714	789.474875	0.06435	2.5466E-05	0.43993	0.0001741	0.50428	0.00019957	395.7447192574378	72.611	0.35613	72.611	72.423	72.779	0					12	6	3	0	0	0	0.84748	1	26443	26443		21.747	2.3076	1	1413200			24827	3001	17952	18083	24320	24320					0.07171622565283542
KGFDEKRH	8	Unmodified	_KGFDEKRH_					0	0	0			REV__tr|U7T4A5|U7T4A5_FUSNUBenzoyl-CoAreductase,subunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00400PE=3SV=1	REV__tr|U7T4A5|U7T4A5_FUSNUBenzoyl-CoAreductase,subunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00400PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	509.1662292480469	2	508.76724	1015.51993	-0.65213	-0.00033178	-1.4447	-0.00073501	-2.0968	-0.0010668	508.76641397547894	133.97	0.40903	134.13	133.96	134.37	0.16487					12	7	2	0	0	0	0.7766	1	52753	52753		7.2892	0	1	9220100	+		24828	28796	17953	18084	24321	24321					0.012788213605062992
KGFGDHIHW	9	Unmodified	_KGFGDHIHW_					0	0	0		ENSG00000117862|ENST00000371626|TXNDC12	ENSG00000117862|ENST00000371626|TXNDC12	ENSG00000117862|ENST00000371626|TXNDC12	MULTI-SECPEP	A375_MHC_IP_R1	1	366.582275390625	3	366.182281	1095.52501	-0.12941	-4.7389E-05	0.28867	0.00010571	0.15926	5.8318E-05	366.18234335379924	41.546	0.40868	41.546	41.317	41.725	0					20	7	3	0	0	0	0.10103	1	14360	14360		57.249	41.402	1	5837900			24829	3515	17954	18085	24322	24322					-0.018928747768768517
KGFGDHIHW	9	Unmodified	_KGFGDHIHW_					0	0	0		ENSG00000117862|ENST00000371626|TXNDC12	ENSG00000117862|ENST00000371626|TXNDC12	ENSG00000117862|ENST00000371626|TXNDC12	MULTI-SECPEP	A375_MHC_IP_R2	2	366.58221435546875	3	366.182281	1095.52501	-0.045637	-1.6711E-05	0.59483	0.00021782	0.5492	0.00020111	366.1824056439698	40.629	0.60995	41.403	41.133	41.743	0.77451					24	11	4	0	0	0	0.027983	1	15059	15059		74.2	52.453	1	5525300			24830	3515	17954	18085	24323	24323					-0.018928747768768517
KGFPVAGW	8	Unmodified	_KGFPVAGW_					0	0	0			REV__ENSG00000171103|ENST00000306108|TRMT61B	REV__ENSG00000171103|ENST00000306108|TRMT61B	MSMS	A375_MHC_IP_R1	1	431.2656555175781	2	431.234513	860.454474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.217	1	40.217	39.717	40.717	0								0	0	0	0.16876	1	13803	13803		10.183	1.5901	1		+		24831	21042	17955	18086	24324	24324					0.018664519054595985
KGFSEEHNTW	10	Unmodified	_KGFSEEHNTW_					0	0	0		ENSG00000094916|ENST00000209875|CBX5;ENST00000468470.1_1_3:88144944-88145022:-|nuORF	ENSG00000094916|ENST00000209875|CBX5	ENSG00000094916|ENST00000209875|CBX5	MULTI-MSMS	A375_MHC_IP_R1	1	618.17724609375	2	617.778002	1233.54145	-0.4439	-0.00027423	0.77196	0.0004769	0.32805	0.00020266	617.7778458321953	28.253	0.30197	28.253	28.088	28.39	0					15	5	4	0	0	0	0.0015274	1	8715	8715		142.92	89.086	1	5084900			24832	2029	17956	18087	24325	24325					-0.06597838401444278
KGFSEEHNTW	10	Unmodified	_KGFSEEHNTW_					0	0	0		ENSG00000094916|ENST00000209875|CBX5;ENST00000468470.1_1_3:88144944-88145022:-|nuORF	ENSG00000094916|ENST00000209875|CBX5	ENSG00000094916|ENST00000209875|CBX5	MULTI-SECPEP	A375_MHC_IP_R1	1	412.5877990722656	3	412.18776	1233.54145	0.06492	2.6759E-05	1.0605	0.00043711	1.1254	0.00046387	412.18823797877786	28.283	0.705	28.283	27.786	28.491	0					32	13	4	0	0	0	0.25713	1	8698	8698		68.484	40.303	1	9226100			24833	2029	17956	18087	24326	24326					-0.06597838401444278
KGFSEEHNTW	10	Unmodified	_KGFSEEHNTW_					0	0	0		ENSG00000094916|ENST00000209875|CBX5;ENST00000468470.1_1_3:88144944-88145022:-|nuORF	ENSG00000094916|ENST00000209875|CBX5	ENSG00000094916|ENST00000209875|CBX5	MULTI-MSMS	A375_MHC_IP_R2	2	618.177490234375	2	617.778002	1233.54145	-0.62296	-0.00038485	0.89346	0.00055196	0.2705	0.00016711	617.7785238462851	27.553	0.50681	28.231	27.895	28.401	0.67857					16	9	3	0	0	0	0.0015274	1	9463	9463		142.92	82.845	1	5170700			24834	2029	17956	18087	24327	24327					-0.06597838401444278
KGFVTWWIW	9	Unmodified	_KGFVTWWIW_					0	0	0			REV__ENST00000358741.3_2_X:70386968-70387031:+|nuORF	REV__ENST00000358741.3_2_X:70386968-70387031:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	408.61175537109375	3	408.218443	1221.6335	-0.42224	-0.00017237	1.4528	0.00059306	1.0306	0.00042069	408.21904588438105	23.726	0.50746	23.726	23.584	24.092	0					20	9	3	0	0	0	0.58047	1	6701	6701		10.8	0	1	3030500	+		24835	23864	17957	18088	24328	24328					0.031549164735451996
KGFYDKDSSGW	11	Unmodified	_KGFYDKDSSGW_					0	0	0		DDX3X|p.V657Gfs*2|1|0.51|ENSG00000215301|chrX:41347694-41347695|-/G|frameshift_variant;ENSG00000215301|ENST00000644876|DDX3X;DDX3X|p.P297Rfs*22|1|0.21|ENSG00000215301|chrX:41344264-41344270|CTTGCGT/-|frameshift_variant;ENST00000542215.5_1_X:41193845-41203505:+|nuORF;DDX3X|p.A68Rfs*153|1|0.89|ENSG00000215301|chrX:41341534-41341534|G/-|frameshift_variant	DDX3X|p.V657Gfs*2|1|0.51|ENSG00000215301|chrX:41347694-41347695|-/G|frameshift_variant;DDX3X|p.A68Rfs*153|1|0.89|ENSG00000215301|chrX:41341534-41341534|G/-|frameshift_variant	DDX3X|p.V657Gfs*2|1|0.51|ENSG00000215301|chrX:41347694-41347695|-/G|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	431.2656555175781	3	430.531415	1288.57242	-0.20599	-8.8686E-05	-0.11278	-4.8555E-05	-0.31877	-0.00013724	430.8656875357578	40.151	0.40731	40.151	39.948	40.355	0					12	7	2	0	0	0	0.98663	1	13803	13803		8.7518	7.642	1	2426600			24836	727;726	17958	18089	24329	24329					-0.060326850872115756
KGGCGGGS	8	Unmodified	_KGGCGGGS_					0	0	0			REV__ENSG00000131409|ENST00000652263|LRRC4B	REV__ENSG00000131409|ENST00000652263|LRRC4B	MULTI-SECPEP	A375_MHC_IP_R1	1	621.7415771484375	1	622.261336	621.254059	-0.41859	-0.00026047	2.105	0.0013099	1.6865	0.0010494	622.262368689845	79.548	0.46257	79.548	79.214	79.676	0					11	8	2	0	0	0	0.972	1	28947	28947		2.3027	0	1	894090	+		24837	18603	17959	18090	24330	24330					-0.07171765753639647
KGGCGSSCC	9	Unmodified	_KGGCGSSCC_					0	0	0		ENSG00000196224|ENST00000399685|KRTAP5-3	ENSG00000196224|ENST00000399685|KRTAP5-3	ENSG00000196224|ENST00000399685|KRTAP5-3	MSMS	A375_MHC_IP_R2	2	401.1994934082031	2	401.138041	800.261529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.751	1	18.347	17.847	18.847	0.59616								0	0	0	0.15486	1	5238	5238		0	0	1				24838	9014	17960	18091	24331	24331					-0.14659117539895306
KGGGGGGY	8	Unmodified	_KGGGGGGY_					0	0	0		ENST00000371222.3_1_1:59247375-59247612:-|nuORF	ENST00000371222.3_1_1:59247375-59247612:-|nuORF	ENST00000371222.3_1_1:59247375-59247612:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	651.9811401367188	1	652.304915	651.297639	-0.69148	-0.00045106	1.3204	0.00086128	0.62888	0.00041022	652.3033348614516	67.239	0.20575	67.239	67.091	67.297	0					5	3	2	0	0	0	0.972	1	24360	24360		0	0	1	656870			24839	11171	17961	18092	24332	24332					-0.04195832984862591
KGGGGGNP	8	Unmodified	_KGGGGGNP_					0	0	0			REV__nc|ENSG00000092096|Q8WUG5-3|SLC22A17	REV__nc|ENSG00000092096|Q8WUG5-3|SLC22A17	MULTI-SECPEP	A375_MHC_IP_R2	2	643.2127685546875	1	643.315814	642.308538	-0.6124	-0.00039397	4.1682	0.0026815	3.5558	0.0022875	643.3151948744667	91.288	0.50621	92.022	91.767	92.273	0.73451					12	9	2	0	0	0	0.972	1	34661	34661		0.6015	0.076735	1	805990	+		24840	16962	17962	18093	24333	24333					-0.02692430610568408
KGGKKPIQKL	10	Unmodified	_KGGKKPIQKL_					0	0	0		MYH8|p.Q1814P|1|0.21|ENSG00000133020|chr17:10392853-10392853|T/G|missense_variant	MYH8|p.Q1814P|1|0.21|ENSG00000133020|chr17:10392853-10392853|T/G|missense_variant	MYH8|p.Q1814P|1|0.21|ENSG00000133020|chr17:10392853-10392853|T/G|missense_variant	MSMS	A375_MHC_IP_R1	1	366.2784729003906	3	366.244881	1095.71281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.135	1	51.135	50.635	51.635	0								0	0	0	0.14512	1	18140	18140		27.088	4.3134	1				24841	14437	17963	18094	24334	24334					0.16878563427690096
KGGPLRAL	8	Unmodified	_KGGPLRAL_					0	0	0		nc|ENSG00000120314|Q9H6Y2-2|WDR55;ENST00000506393.5_1_5:140048657-140049236:+|nuORF;ENSG00000120314|ENST00000358337|WDR55	nc|ENSG00000120314|Q9H6Y2-2|WDR55	nc|ENSG00000120314|Q9H6Y2-2|WDR55	MULTI-SECPEP	A375_MHC_IP_R1	1	406.6607971191406	2	406.261062	810.507572	-0.41125	-0.00016707	0.24401	9.913E-05	-0.16724	-6.7944E-05	406.26115596166363	27.271	0.60631	27.271	27.078	27.684	0					19	11	2	0	0	0	0.8957	1	8279	8279		15.847	4.2069	1	2144200			24842	3657	17964	18095	24335	24335					0.09473829688124624
KGGRKGGH	8	Unmodified	_KGGRKGGH_					0	0	0		ENSG00000106244|ENST00000350498|PDAP1;ENST00000512074.1_1_5:84845227-84845416:+|nuORF	ENSG00000106244|ENST00000350498|PDAP1	ENSG00000106244|ENST00000350498|PDAP1	MULTI-MSMS	A375_MHC_IP_R1	1	399.1305236816406	2	398.730461	795.446369	-0.15748	-6.2791E-05	0.44062	0.00017569	0.28315	0.0001129	398.7305629074549	100.91	0.96257	100.91	100.23	101.19	0					30	18	2	0	0	0	0.77842	1	37097	37097		0.69038	0	1	3640100			24843	2674	17965	18096	24336	24336					0.04046317708719016
KGGRKGGH	8	Unmodified	_KGGRKGGH_					0	0	0		ENSG00000106244|ENST00000350498|PDAP1;ENST00000512074.1_1_5:84845227-84845416:+|nuORF	ENSG00000106244|ENST00000350498|PDAP1	ENSG00000106244|ENST00000350498|PDAP1	MULTI-MSMS	A375_MHC_IP_R2	2	399.13031005859375	2	398.730461	795.446369	0.12138	4.8398E-05	0.067376	2.6865E-05	0.18875	7.5262E-05	398.7304114977989	99.618	2.2962	100.38	99.912	102.21	0.76278					63	44	2	0	0	0	0.77797	1	38220	38220		2.3027	0	1	3330100			24844	2674	17965	18096	24337	24337					0.04046317708719016
KGGSLVGLPL	10	Unmodified	_KGGSLVGLPL_					0	0	0			REV__nc|ENSG00000120910|P48454-2|PPP3CC	REV__nc|ENSG00000120910|P48454-2|PPP3CC	MULTI-MSMS	A375_MHC_IP_R1	1	471.19464111328125	2	470.794935	939.575317	-0.72928	-0.00034334	0.55979	0.00026355	-0.16948	-7.9793E-05	470.79510531916173	38.262	0.50993	38.262	38.067	38.577	0					17	9	2	0	0	0	0.33265	1	12985	12985		38.176	3.7738	1	4572200	+		24845	18141	17966	18097	24338	24338					0.10311234828293436
KGGSLVGLPL	10	Unmodified	_KGGSLVGLPL_					0	0	0			REV__nc|ENSG00000120910|P48454-2|PPP3CC	REV__nc|ENSG00000120910|P48454-2|PPP3CC	MULTI-MSMS	A375_MHC_IP_R2	2	471.1946716308594	2	470.794935	939.575317	-1.0615	-0.00049976	0.53713	0.00025288	-0.5244	-0.00024688	470.7950811182241	37.328	0.46001	38.099	37.867	38.327	0.7709					19	8	3	0	0	0	0.39599	1	13648	13648		34.402	10.381	1	4293600	+		24846	18141	17966	18097	24339	24339					0.10311234828293436
KGGSLVGLPL	10	Unmodified	_KGGSLVGLPL_					0	0	0			REV__nc|ENSG00000120910|P48454-2|PPP3CC	REV__nc|ENSG00000120910|P48454-2|PPP3CC	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	470.794935	939.575317	-0.72928	-0.00034334	0.55979	0.00026355	-0.16948	-7.9793E-05	470.79510531916173	38.262	0.50993	38.262	38.067	38.577	0	0.081598	9.322E-06	NaN	38.176	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4572200	+		24847	18141	17966	18097							0.10311234828293436
KGGSLVGLPL	10	Unmodified	_KGGSLVGLPL_					0	0	0			REV__nc|ENSG00000120910|P48454-2|PPP3CC	REV__nc|ENSG00000120910|P48454-2|PPP3CC	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	470.794935	939.575317	-1.0615	-0.00049976	0.53713	0.00025288	-0.5244	-0.00024688	470.7950811182241	37.328	0.46001	38.099	37.867	38.327	0.7709	-0.081598	-1.2019E-05	NaN	38.176	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4293600	+		24848	18141	17966	18097							0.10311234828293436
KGGVIGFG	8	Unmodified	_KGGVIGFG_					0	0	0			REV__nc|ENSG00000132849|Q8NI35-4|PATJ	REV__nc|ENSG00000132849|Q8NI35-4|PATJ	MULTI-SECPEP	A375_MHC_IP_R1	1	734.8172607421875	1	734.419551	733.412274	-0.90026	-0.00066117	0.26302	0.00019317	-0.63724	-0.000468	734.4177116950023	143.1	0.50436	143.1	142.74	143.24	0					20	9	4	0	0	0	0.972	1	54881	54881		0.79363	0	1	1630800	+		24849	18687	17967	18098	24340	24340					0.03490476497097461
KGHAPIPP	8	Unmodified	_KGHAPIPP_					0	0	0			REV__nc|ENSG00000184274|P59091|LINC00315	REV__nc|ENSG00000184274|P59091|LINC00315	MULTI-MSMS	A375_MHC_IP_R1	1	817.405029296875	1	816.472649	815.465373	-0.74364	-0.00060717	-2.121	-0.0017317	-2.8646	-0.0023389	816.4717805738907	142.71	0.2538	142.71	142.54	142.79	0					8	4	3	0	0	0	0.77839	1	54749	54749		0.79363	0	1	2534200	+		24850	27408	17968	18099	24341	24341					0.05025854279756459
KGHAPIPP	8	Unmodified	_KGHAPIPP_					0	0	0			REV__nc|ENSG00000184274|P59091|LINC00315	REV__nc|ENSG00000184274|P59091|LINC00315	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	816.472649	815.465373	-0.74364	-0.00060717	-2.121	-0.0017317	-2.8646	-0.0023389	816.4717805738907	142.71	0.2538	142.71	142.54	142.79	0	-0.023996	-0.0010404	NaN	0.79363	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2534200	+		24851	27408	17968	18099							0.05025854279756459
KGHAPIPP	8	Unmodified	_KGHAPIPP_					0	0	0			REV__nc|ENSG00000184274|P59091|LINC00315	REV__nc|ENSG00000184274|P59091|LINC00315	MULTI-MATCH	A375_MHC_IP_R2	2		1	816.472649	815.465373	-0.65003	-0.00053073	-0.81267	-0.00066352	-1.4627	-0.0011943	816.4719622876083	142.73	0.25461	142.76	142.64	142.89	0.030731	0.023996	2.7774E-05	NaN	0.79363	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2581300	+		24852	27408	17968	18099							0.05025854279756459
KGHRKIIK	8	Unmodified	_KGHRKIIK_					0	0	0			REV__tr|U7SP19|U7SP19_FUSNULargeribosomalsubunitproteinbL36OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpmJPE=3SV=1	REV__tr|U7SP19|U7SP19_FUSNULargeribosomalsubunitproteinbL36OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpmJPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	980.2230834960938	1	979.652345	978.645068	0.1987	0.00019466	4.1626	0.0040779	4.3613	0.0042725	979.6524281443222	112.29	0.2529	113.02	112.92	113.17	0.72458					5	4	2	0	0	0	0.972	1	42328	42328		4.756	0	1	1167200	+		24853	28345	17969	18100	24342	24342					0.15489158287562077
KGIINKHF	8	Unmodified	_KGIINKHF_					0	0	0			REV__nc|ENSG00000115677|Q00341-2|HDLBP	REV__nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-SECPEP	A375_MHC_IP_R1	1	479.1874694824219	2	478.787444	955.560336	0.0087694	4.1987E-06	-0.39603	-0.00018961	-0.38726	-0.00018542	478.78714769205493	48.838	0.50723	48.838	48.526	49.033	0					15	9	2	0	0	0	0.50167	1	17267	17267		50.855	9.0154	1	2629800	+		24854	17905	17970	18101	24343	24343					0.08077787750949028
KGIINKHF	8	Unmodified	_KGIINKHF_					0	0	0			REV__nc|ENSG00000115677|Q00341-2|HDLBP	REV__nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	478.787444	955.560336	-0.42605	-0.00020399	-0.37935	-0.00018163	-0.8054	-0.00038561	478.78710384082274	47.845	0.40668	48.607	48.326	48.733	0.76128	-0.11557	8.0814E-06	NaN	50.855	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1809100	+		24855	17905	17970	18101							0.08077787750949028
KGIMKKGYK	9	Unmodified	_KGIMKKGYK_					0	0	0		ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54	ENSG00000123064|ENST00000306014|DDX54	ENSG00000123064|ENST00000306014|DDX54	MSMS	A375_MHC_IP_R1	1	351.59149169921875	3	351.547684	1051.62122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.108	1	33.108	32.608	33.608	0								0	0	0	0.15486	1	10771	10771		10.151	1.995	1				24856	3820	17971	18102	24344	24344					0.09747556738875574
KGIRLRFGL	9	Unmodified	_KGIRLRFGL_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MSMS	A375_MHC_IP_R1	1	353.9450378417969	3	353.897704	1058.67128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.581	1	45.581	45.081	46.081	0								0	0	0	0.15486	1	15957	15957		7.1017	1.8048	1		+		24857	22689	17972	18103	24345	24345					0.14429427459026556
KGIRRLRRRH	10	Unmodified	_KGIRRLRRRH_					0	0	0		ENST00000554003.1_1_12:57638697-57638930:-|nuORF;ENST00000554578.5_1_12:57637929-57638930:-|nuORF	ENST00000554003.1_1_12:57638697-57638930:-|nuORF	ENST00000554003.1_1_12:57638697-57638930:-|nuORF	MSMS	A375_MHC_IP_R1	1	674.3515625	2	674.43707	1346.85959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.37	1	116.37	115.87	116.87	0								0	0	0	0.15591	1	42683	42683		1.6526	0.32309	1				24858	13411	17973	18104	24346	24346					0.20003098156007582
KGKEDTQKK	9	Unmodified	_KGKEDTQKK_					0	0	0		ENSG00000154240|ENST00000535342|CEP112	ENSG00000154240|ENST00000535342|CEP112	ENSG00000154240|ENST00000535342|CEP112	MULTI-SECPEP	A375_MHC_IP_R2	2	354.61328125	3	354.536501	1060.58767	-0.492	-0.00017443	-1.5246	-0.00054051	-2.0166	-0.00071494	354.53602313977166	19.011	0.43188	19.614	19.452	19.884	0.60308					12	8	2	0	0	0	0.76187	1	5727	5727		2.2828	0	1	2874600			24859	6074	17974	18105	24347	24347					0.059802265006510424
KGKGKGAA	8	Unmodified	_KGKGKGAA_					0	0	0			REV__ENST00000517974.1_1_8:117671201-117768048:-|nuORF	REV__ENST00000517974.1_1_8:117671201-117768048:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	357.930908203125	2	358.724313	715.434072	0.022228	7.9737E-06	4.4293	0.0015889	4.4515	0.0015969	358.72614339511176	52.53	0.3559	52.53	52.287	52.643	0					10	6	2	0	0	0	0.972	1	18623	18623		0.69038	0.088878	1	1105000	+		24860	19603	17975	18106	24348	24348					0.06497281245640352
KGKGNPGVL	9	Unmodified	_KGKGNPGVL_					0	0	0			REV__nc|ENSG00000204574|Q8NE71-2|ABCF1	REV__nc|ENSG00000204574|Q8NE71-2|ABCF1	MULTI-SECPEP	A375_MHC_IP_R2	2	434.9443054199219	2	435.263802	868.513051	-0.28471	-0.00012392	-0.19561	-8.5141E-05	-0.48032	-0.00020906	435.2636957153862	62.72	0.60748	63.463	63.18	63.788	0.74263					25	11	3	0	0	0	0.73363	1	23709	23709		10.824	0.75	1	5072800	+		24861	22526	17976	18107	24349	24349					0.07353508479945958
KGKIELKQKQY	11	Unmodified	_KGKIELKQKQY_					0	0	0			REV__ENSG00000178295|ENST00000381254|GEN1	REV__ENSG00000178295|ENST00000381254|GEN1	MSMS	A375_MHC_IP_R1	1	681.6275024414062	2	681.908819	1361.80309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.89	1	91.89	91.39	92.39	0								0	0	0	0.16249	1	33764	33764		5.7319	2.4505	1		+		24862	21501	17977	18108	24350	24350					0.13665567965472292
KGKKKKRKK	9	Unmodified	_KGKKKKRKK_					0	0	0		ENST00000519694.1_1_7:27208459-27208531:+|nuORF	ENST00000519694.1_1_7:27208459-27208531:+|nuORF	ENST00000519694.1_1_7:27208459-27208531:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	564.184814453125	2	564.906217	1127.79788	-0.47622	-0.00026902	0.76272	0.00043087	0.2865	0.00016185	564.9069845615396	82.78	0.25108	83.523	83.347	83.598	0.74293					5	4	2	0	0	0	0.81779	1	31390	31390		0	0	1	1114900			24863	12983	17978	18109	24351	24351					0.23909353684143753
KGKKLLRKPL	10	Unmodified	_KGKKLLRKPL_					0	0	0			REV__ENSG00000116254|ENST00000262450|CHD5	REV__ENSG00000116254|ENST00000262450|CHD5	MSMS	A375_MHC_IP_R2	2	590.9080810546875	2	590.91625	1179.81795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.35	1	119.88	119.38	120.38	0.5321								0	0	0	0.15629	1	45461	45461		0.40072	0	1		+		24864	17951	17979	18110	24352	24352					0.2352310462413243
KGKKVKKLM	9	Unmodified	_KGKKVKKLM_					0	0	0			REV__tr|U7T6I9|U7T6I9_FUSNUDUF5105domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00254PE=4SV=1	REV__tr|U7T6I9|U7T6I9_FUSNUDUF5105domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00254PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	1059.728759765625	1	1059.70708	1058.69981	0.072428	7.6752E-05	1.8696	0.0019813	1.9421	0.002058	1060.7099199560028	119.34	0.2006	119.34	119.18	119.38	0					5	3	2	0	0	0	0.81779	1	44030	44030		0.52476	0.52476	1	11467000	+		24865	28863	17980	18111	24353	24353					0.17280409043928557
KGKMPCLI	8	Unmodified	_KGKMPCLI_					0	0	0		nc|ENSG00000157833|Q75VX8-3|GAREM2;nc|ENSG00000157833|Q75VX8-2|GAREM2;ENSG00000157833|ENST00000401533|GAREM2;nc|ENSG00000141441|Q9H706-3|GAREM1;nc|ENSG00000141441|Q9H706-2|GAREM1;ENSG00000141441|ENST00000269209|GAREM1	nc|ENSG00000157833|Q75VX8-3|GAREM2;nc|ENSG00000141441|Q9H706-3|GAREM1	nc|ENSG00000141441|Q9H706-3|GAREM1	MSMS	A375_MHC_IP_R1	1	445.27880859375	2	445.253534	888.492515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.523	1	41.523	41.023	42.023	0								0	0	0	0.16876	1	14341	14341		4.756	0.81161	1				24866	14645;6269	17981	18112	24354	24354					0.04380878504264274
KGKPVRIMW	9	Oxidation (M)	_KGKPVRIM(Oxidation (M))W_		KGKPVRIM(1)W		KGKPVRIM(58)W	0	0	1		ENSG00000151846|ENST00000281589|PABPC3;ENSG00000070756|ENST00000318607|PABPC1;nc|ENSG00000070756|P11940-2|PABPC1	ENSG00000151846|ENST00000281589|PABPC3	ENSG00000151846|ENST00000281589|PABPC3	MULTI-MSMS	A375_MHC_IP_R1	1	377.95513916015625	3	377.55495	1129.64302	0.12833	4.845E-05	0.089716	3.3873E-05	0.21804	8.2323E-05	377.5549688016535	27.962	0.85727	27.962	27.684	28.541	0					23	16	2	0	0	0	0.066859	1	8507	8507		57.722	46.922	1	18839000			24867	5931	17982	18113	24355	24355		317			0.08338361487426482
KGKPVRIMW	9	Unmodified	_KGKPVRIMW_					0	0	0		ENSG00000151846|ENST00000281589|PABPC3;ENSG00000070756|ENST00000318607|PABPC1;nc|ENSG00000070756|P11940-2|PABPC1	ENSG00000151846|ENST00000281589|PABPC3	ENSG00000151846|ENST00000281589|PABPC3	MULTI-SECPEP	A375_MHC_IP_R2	2	372.62347412109375	3	372.223311	1113.6481	0.079049	2.9424E-05	-0.35323	-0.00013148	-0.27418	-0.00010206	372.22319204791717	33.414	0.50768	34.166	33.891	34.399	0.75225					20	9	4	0	0	0	0.76827	1	11980	11980		10.8	9.728	1	4622000			24868	5931	17982	18114	24356	24356					0.0958266535005805
KGKPVRIMW	9	Unmodified	_KGKPVRIMW_					0	0	0		ENSG00000151846|ENST00000281589|PABPC3;ENSG00000070756|ENST00000318607|PABPC1;nc|ENSG00000070756|P11940-2|PABPC1	ENSG00000151846|ENST00000281589|PABPC3	ENSG00000151846|ENST00000281589|PABPC3	MULTI-MATCH	A375_MHC_IP_R1	1		3	372.223311	1113.6481	0.26645	9.9179E-05	0.43398	0.00016154	0.70042	0.00026071	372.22345460635194	34.447	0.40485	34.447	34.303	34.708	0	0.14035	0.00052286	NaN	10.8	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2456400			24869	5931	17982	18114							0.0958266535005805
KGKWIKIMCN	10	Unmodified	_KGKWIKIMCN_					0	0	0		ENST00000447404.6_1_9:125922691-125923301:-|nuORF	ENST00000447404.6_1_9:125922691-125923301:-|nuORF	ENST00000447404.6_1_9:125922691-125923301:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	407.88238525390625	3	407.559595	1219.65695	-0.37263	-0.00015187	0.29128	0.00011871	-0.081349	-3.3155E-05	407.8939439359926	24.273	0.45565	24.273	24.092	24.547	0					12	8	2	0	0	0	0.62155	1	6819	6819		12.175	3.7304	1	8022600			24870	12045	17983	18115	24357	24357					0.05591270924219316
KGLADLFIWV	10	Unmodified	_KGLADLFIWV_					0	0	0			REV__ENST00000302174.8_1_4:88343824-88343896:+|nuORF	REV__ENST00000302174.8_1_4:88343824-88343896:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	388.27191162109375	3	387.893737	1160.65938	0.34507	0.00013385	0.20829	8.0795E-05	0.55336	0.00021464	387.8934840763607	23.011	0.65849	23.011	22.773	23.432	0					30	12	4	0	0	0	0.70972	1	6300	6300		7.9454	0.46833	1	6969200	+		24871	23431	17984	18116	24358	24358					0.08547765925140993
KGLAITFV	8	Unmodified	_KGLAITFV_					0	0	0		ENSG00000123136|ENST00000242776|DDX39A;ENST00000462421.1_1_6:31498511-31498703:-|nuORF;ENST00000376177.6_1_6:31498213-31498830:-|nuORF;ENST00000587730.5_1_19:14519750-14520297:-|nuORF;ENST00000588692.5_1_19:14519750-14520718:-|nuORF;ENST00000462256.5_1_6:31498213-31500844:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;ENST00000474961.5_1_6:31498213-31499248:-|nuORF	ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000198563|Q13838-2|DDX39B;ENST00000474961.5_1_6:31498213-31499248:-|nuORF	nc|ENSG00000198563|Q13838-2|DDX39B	MULTI-SECPEP	A375_MHC_IP_R2	2	425.1654968261719	2	424.765646	847.516739	-0.15402	-6.5424E-05	-0.40641	-0.00017263	-0.56043	-0.00023805	424.7654386079685	83.002	0.50377	83.741	83.444	83.947	0.73962					15	9	2	0	0	0	0.81376	1	31526	31526		39.957	11.47	1	2223300			24872	9284;3828;12413	17985	18117	24359	24359					0.08688178253794376
KGLALPNQKI	10	Unmodified	_KGLALPNQKI_					0	0	0			REV__ENST00000403372.6_2_13:24144521-24144686:+|nuORF	REV__ENST00000403372.6_2_13:24144521-24144686:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	361.6288757324219	3	361.229119	1080.66553	-0.50924	-0.00018395	0.32814	0.00011853	-0.18111	-6.5421E-05	361.22898503465774	61.319	0.70482	62.064	61.718	62.423	0.74504					22	13	3	0	0	0	0.61662	1	23242	23242		19.626	0.26401	1	1848100	+		24873	24417	17986	18118	24360	24360					0.1284228415670441
KGLALPNQKI	10	Unmodified	_KGLALPNQKI_					0	0	0			REV__ENST00000403372.6_2_13:24144521-24144686:+|nuORF	REV__ENST00000403372.6_2_13:24144521-24144686:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	361.229119	1080.66553	0.24436	8.827E-05	-0.40268	-0.00014546	-0.15832	-5.7191E-05	361.22893734452344	62.306	0.512	62.306	62.097	62.609	0	0.12076	-0.00033045	NaN	19.626	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2066200	+		24874	24417	17986	18118							0.1284228415670441
KGLALPNQKI	10	Unmodified	_KGLALPNQKI_					0	0	0			REV__ENST00000403372.6_2_13:24144521-24144686:+|nuORF	REV__ENST00000403372.6_2_13:24144521-24144686:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	361.229119	1080.66553	-0.50924	-0.00018395	0.32814	0.00011853	-0.18111	-6.5421E-05	361.22898503465774	61.319	0.70482	62.064	61.718	62.423	0.74504	-0.12076	0.00046153	NaN	19.626	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1848100	+		24875	24417	17986	18118							0.1284228415670441
KGLEPWKRLR	10	Unmodified	_KGLEPWKRLR_					0	0	0		ENSG00000163617|ENST00000295878|CCDC191;ENST00000527855.1_1_3:113697695-113720591:-|nuORF	ENSG00000163617|ENST00000295878|CCDC191	ENSG00000163617|ENST00000295878|CCDC191	MULTI-MSMS	A375_MHC_IP_R1	1	428.60357666015625	3	428.262935	1281.76697	-0.072947	-3.1241E-05	-1.117	-0.00047835	-1.1899	-0.00050959	428.26256178248894	51.036	0.40495	51.036	50.814	51.219	0					17	7	3	0	0	0	0.7245	1	18029	18029		1.3296	0.11481	1	2057500			24876	6692	17987	18119	24361	24361					0.13736155579249498
KGLGGTRH	8	Unmodified	_KGLGGTRH_					0	0	0		ENST00000305850.9_1_16:81040200-81040455:+|nuORF	ENST00000305850.9_1_16:81040200-81040455:+|nuORF	ENST00000305850.9_1_16:81040200-81040455:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	413.6385498046875	2	413.238119	824.461684	0.64729	0.00026749	-0.55216	-0.00022818	0.095127	3.931E-05	413.2378533637921	127.29	0.55894	127.29	127.06	127.62	0					17	10	2	0	0	0	0.77741	1	48757	48757		4.3292	2.0265	1	41316000			24877	10572	17988	18120	24362	24362					0.04243184505901354
KGLIGRSRS	9	Unmodified	_KGLIGRSRS_					0	0	0			REV__nc|ENSG00000132436|Q6PIW4-2|FIGNL1	REV__nc|ENSG00000132436|Q6PIW4-2|FIGNL1	MULTI-MSMS	A375_MHC_IP_R1	1	487.6983642578125	2	487.298707	972.582862	-0.22078	-0.00010759	-0.58113	-0.00028319	-0.80191	-0.00039077	487.29835958405727	128.66	0.55984	128.66	128.48	129.04	0					15	10	2	0	0	0	0.70307	1	49414	49414		6.7232	1.4925	1	19888000	+		24878	18652	17989	18121	24363	24363					0.09547387148563757
KGLIGRSRS	9	Unmodified	_KGLIGRSRS_					0	0	0			REV__nc|ENSG00000132436|Q6PIW4-2|FIGNL1	REV__nc|ENSG00000132436|Q6PIW4-2|FIGNL1	MULTI-MSMS	A375_MHC_IP_R2	2	487.6986389160156	2	487.298707	972.582862	-0.65931	-0.00032128	-0.49723	-0.0002423	-1.1565	-0.00056358	487.29832502521157	128.39	0.66122	128.63	128.4	129.06	0.23946					22	12	3	0	0	0	0.70307	1	50384	50384		6.7232	1.4925	1	23429000	+		24879	18652	17989	18121	24364	24364					0.09547387148563757
KGLIGRSRS	9	Unmodified	_KGLIGRSRS_					0	0	0			REV__nc|ENSG00000132436|Q6PIW4-2|FIGNL1	REV__nc|ENSG00000132436|Q6PIW4-2|FIGNL1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	487.298707	972.582862	-0.22078	-0.00010759	-0.58113	-0.00028319	-0.80191	-0.00039077	487.29835958405727	128.66	0.55984	128.66	128.48	129.04	0	0.014097	-6.9657E-05	NaN	6.7232	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19888000	+		24880	18652	17989	18121							0.09547387148563757
KGLIGRSRS	9	Unmodified	_KGLIGRSRS_					0	0	0			REV__nc|ENSG00000132436|Q6PIW4-2|FIGNL1	REV__nc|ENSG00000132436|Q6PIW4-2|FIGNL1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	487.298707	972.582862	-0.65931	-0.00032128	-0.49723	-0.0002423	-1.1565	-0.00056358	487.29832502521157	128.39	0.66122	128.63	128.4	129.06	0.23946	-0.014097	1.2119E-05	NaN	6.7232	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23429000	+		24881	18652	17989	18121							0.09547387148563757
KGLIKKQAQV	10	Unmodified	_KGLIKKQAQV_					0	0	0			REV__nc|ENSG00000145779|O95379-3|TNFAIP8	REV__nc|ENSG00000145779|O95379-3|TNFAIP8	MULTI-MSMS	A375_MHC_IP_R2	2	1113.114990234375	1	1112.715	1111.70773	0.30297	0.00033712	-0.4598	-0.00051163	-0.15683	-0.00017451	1112.7141926426814	149.6	1.5337	149.62	148.48	150.01	0.018265					139	58	3	0	0	0	0.72712	1	57972	57972		0	0	1	449780	+		24882	19491	17990	18122	24365	24365					0.15634259565058528
KGLIKKQAQV	10	Unmodified	_KGLIKKQAQV_					0	0	0			REV__nc|ENSG00000145779|O95379-3|TNFAIP8	REV__nc|ENSG00000145779|O95379-3|TNFAIP8	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	1112.715	1111.70773	0.30297	0.00033712	-0.4598	-0.00051163	-0.15683	-0.00017451	1112.7141926426814	149.6	1.5337	149.62	148.48	150.01	0.018265	0.038113	-0.00014897	NaN	0	139	58	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	449780	+		24883	19491	17990	18122							0.15634259565058528
KGLILLYRRLQ	11	Unmodified	_KGLILLYRRLQ_					0	0	0		ENST00000575325.1_1_18:50073-73351:-|nuORF	ENST00000575325.1_1_18:50073-73351:-|nuORF	ENST00000575325.1_1_18:50073-73351:-|nuORF	MSMS	A375_MHC_IP_R1	1	686.843994140625	2	686.942996	1371.87144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.74	1	112.74	112.24	113.24	0								0	0	0	0.16302	1	41323	41323		2.9952	1.5133	1				24884	13635	17991	18123	24366	24366					0.20037857335955778
KGLLLRPV	8	Unmodified	_KGLLLRPV_					0	0	0		ENSG00000102981|ENST00000458121|PARD6A;nc|ENSG00000102981|Q9NPB6|PARD6A	ENSG00000102981|ENST00000458121|PARD6A	ENSG00000102981|ENST00000458121|PARD6A	MULTI-SECPEP	A375_MHC_IP_R1	1	448.1556091308594	2	448.308013	894.601472	-0.079499	-3.564E-05	-0.18158	-8.1404E-05	-0.26108	-0.00011704	448.30794414611347	59.726	0.35634	59.726	59.548	59.905	0					10	6	2	0	0	0	0.972	1	21447	21447		7.9102	0.62092	1	1488800			24885	2408	17992	18124	24367	24367					0.1499554879040943
KGMKAGKPV	9	Unmodified	_KGMKAGKPV_					0	0	0		nc|ENSG00000118407|Q7Z7B0-3|FILIP1;ENSG00000118407|ENST00000237172|FILIP1	nc|ENSG00000118407|Q7Z7B0-3|FILIP1	nc|ENSG00000118407|Q7Z7B0-3|FILIP1	MULTI-SECPEP	A375_MHC_IP_R1	1	458.6339111328125	2	458.275855	914.537157	-0.40504	-0.00018562	0.087917	4.029E-05	-0.31712	-0.00014533	458.2759624697107	26.995	0.60324	26.995	26.828	27.432	0					12	11	2	0	0	0	0.76187	1	8121	8121		3.9444	3.254	1	712740			24886	3540	17993	18125	24368	24368					0.07647025641961136
KGMQLNFVD	9	Unmodified	_KGMQLNFVD_					0	0	0			REV__tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1	REV__tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1	MSMS	A375_MHC_IP_R2	2	526.2205200195312	2	526.265684	1050.51682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.81	1	56.56	56.06	57.06	0.75015								0	0	0	0.15069	1	21088	21088		20.454	2.3073	1		+		24887	28403	17994	18126	24369	24369					-0.00642189808513649
KGNRHARRVK	10	Unmodified	_KGNRHARRVK_					0	0	0		ZNF385A|p.E253Rfs*24|1|0.26|ENSG00000161642|chr12:54371005-54371005|T/-|frameshift_variant;nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENST00000552382.5_1_12:54764042-54772879:-|nuORF;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A	ZNF385A|p.E253Rfs*24|1|0.26|ENSG00000161642|chr12:54371005-54371005|T/-|frameshift_variant	ZNF385A|p.E253Rfs*24|1|0.26|ENSG00000161642|chr12:54371005-54371005|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	611.77392578125	2	611.373604	1220.73265	-0.31898	-0.00019502	1.0385	0.0006349	0.71951	0.00043989	611.3740017994686	139.37	0.44917	139.43	139.25	139.7	0.059906					19	8	3	0	0	0	0.94862	1	54609	54609		1.6526	1.6526	1	2715300			24888	6482	17995	18127	24370	24370					0.13111752211011662
KGNRLVLI	8	Unmodified	_KGNRLVLI_					0	0	0		nc|ENSG00000143921|Q9H221-2|ABCG8;ENSG00000143921|ENST00000272286|ABCG8	nc|ENSG00000143921|Q9H221-2|ABCG8	nc|ENSG00000143921|Q9H221-2|ABCG8	MULTI-MSMS	A375_MHC_IP_R2	2	457.2030944824219	2	456.803094	911.591636	-0.20117	-9.1896E-05	-0.095774	-4.375E-05	-0.29695	-0.00013565	456.8029568127773	46.03	0.40435	46.795	46.654	47.058	0.76519					11	7	2	0	0	0	0.45507	1	17260	17260		50.855	6.448	1	2163700			24889	5447	17996	18128	24371	24371					0.1323036078503037
KGNYDDYLL	9	Unmodified	_KGNYDDYLL_					0	0	0		tr|U7SWT4|U7SWT4_FUSNUHADhydrolase,familyIBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01166PE=4SV=1	tr|U7SWT4|U7SWT4_FUSNUHADhydrolase,familyIBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01166PE=4SV=1	tr|U7SWT4|U7SWT4_FUSNUHADhydrolase,familyIBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01166PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	550.6830444335938	2	550.766571	1099.51859	-0.71087	-0.00039152	0.19512	0.00010746	-0.51575	-0.00028406	550.7664434435402	88.624	0.70889	89.356	89.077	89.786	0.7318					32	13	3	0	0	0	0.4867	1	33875	33875		20.454	1.1966	1	6263200			24890	29816	17997	18129	24372	24372					-0.027188575189029507
KGPKTPDGR	9	Unmodified	_KGPKTPDGR_					0	0	0		ENSG00000095464|ENST00000371447|PDE6C	ENSG00000095464|ENST00000371447|PDE6C	ENSG00000095464|ENST00000371447|PDE6C	MULTI-MSMS	A375_MHC_IP_R1	1	478.6697082519531	2	478.269616	954.524678	-0.53783	-0.00025723	0.15831	7.5715E-05	-0.37952	-0.00018151	478.269651949844	118.84	2.2802	118.84	118.42	120.7	0					80	44	2	0	0	0	0.70886	1	44339	44339		6.2058	1.8765	1	33500000			24891	2044	17998	18130	24373	24373					0.045597055032772005
KGPKTPDGR	9	Unmodified	_KGPKTPDGR_					0	0	0		ENSG00000095464|ENST00000371447|PDE6C	ENSG00000095464|ENST00000371447|PDE6C	ENSG00000095464|ENST00000371447|PDE6C	MULTI-MSMS	A375_MHC_IP_R2	2	478.6703186035156	2	478.269616	954.524678	-0.45582	-0.000218	0.11898	5.6904E-05	-0.33684	-0.0001611	478.26960222047234	118.52	2.0297	119.13	118.44	120.47	0.60909					59	39	2	0	0	0	0.73415	1	45101	45101		3.9444	1.3669	1	47742000			24892	2044	17998	18130	24374	24374					0.045597055032772005
KGPLFKQVFEI	11	Unmodified	_KGPLFKQVFEI_					0	0	0		PDCL|p.Q157L|1|0.73|ENSG00000136940|chr9:122820521-122820521|T/A|missense_variant	PDCL|p.Q157L|1|0.73|ENSG00000136940|chr9:122820521-122820521|T/A|missense_variant	PDCL|p.Q157L|1|0.73|ENSG00000136940|chr9:122820521-122820521|T/A|missense_variant	MSMS	A375_MHC_IP_R1	1	653.4478149414062	2	653.381906	1304.74926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.67	1	134.67	134.17	135.17	0								0	0	0	0.16312	1	51930	51930		2.4985	0.84587	1				24893	15148	17999	18131	24375	24375					0.1090739553376352
KGPLFKQVFEI	11	Unmodified	_KGPLFKQVFEI_					0	0	0		PDCL|p.Q157L|1|0.73|ENSG00000136940|chr9:122820521-122820521|T/A|missense_variant	PDCL|p.Q157L|1|0.73|ENSG00000136940|chr9:122820521-122820521|T/A|missense_variant	PDCL|p.Q157L|1|0.73|ENSG00000136940|chr9:122820521-122820521|T/A|missense_variant	MSMS	A375_MHC_IP_R1	1	653.4472045898438	2	653.381906	1304.74926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.73	1	134.73	134.23	135.23	0								0	0	0	0.16316	1	51955	51955		2.2828	0.19677	1				24894	15148	17999	18131	24376	24376					0.1090739553376352
KGPQNRKHF	9	Unmodified	_KGPQNRKHF_					0	0	0			REV__ZNF214|p.E244K|1|0.33|ENSG00000149050|chr11:7000953-7000953|C/T|missense_variant	REV__ZNF214|p.E244K|1|0.33|ENSG00000149050|chr11:7000953-7000953|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	556.7068481445312	2	556.309606	1110.60466	-0.73384	-0.00040824	-1.4319	-0.00079656	-2.1657	-0.0012048	556.3075845840069	125.89	3.0847	126.18	125.47	128.56	0.2951					137	60	5	0	0	0	0.70307	1	49013	49013		6.7232	1.8262	1	30956000	+		24895	29030	18000	18132	24377	24377					0.05378191897125362
KGPVTSSK	8	Unmodified	_KGPVTSSK_					0	0	0			REV__ENSG00000176771|ENST00000409261|NCKAP5	REV__ENSG00000176771|ENST00000409261|NCKAP5	MULTI-MSMS	A375_MHC_IP_R1	1	402.63427734375	2	402.23471	802.454868	-0.60023	-0.00024143	-0.23743	-9.5503E-05	-0.83766	-0.00033694	402.2346485632454	131.5	0.75735	131.5	131.33	132.08	0					24	14	3	0	0	0	0.77762	1	50706	50706		3.5965	0	1	6981900	+		24896	21417	18001	18133	24378	24378					0.04573826834655392
KGPVTSSK	8	Unmodified	_KGPVTSSK_					0	0	0			REV__ENSG00000176771|ENST00000409261|NCKAP5	REV__ENSG00000176771|ENST00000409261|NCKAP5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	402.23471	802.454868	-0.60023	-0.00024143	-0.23743	-9.5503E-05	-0.83766	-0.00033694	402.2346485632454	131.5	0.75735	131.5	131.33	132.08	0	0.011313	0.00056148	NaN	3.5965	24	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6981900	+		24897	21417	18001	18133							0.04573826834655392
KGPVTSSK	8	Unmodified	_KGPVTSSK_					0	0	0			REV__ENSG00000176771|ENST00000409261|NCKAP5	REV__ENSG00000176771|ENST00000409261|NCKAP5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	402.23471	802.454868	0.012312	4.9523E-06	-1.1609	-0.00046694	-1.1485	-0.00046198	402.2342040779854	131.29	0.61179	131.48	131.29	131.9	0.18953	-0.011313	-0.00018138	NaN	3.5965	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8971300	+		24898	21417	18001	18133							0.04573826834655392
KGQSFFIDAPD	11	Unmodified	_KGQSFFIDAPD_					0	0	0		nc|ENSG00000103274|P53384-2|NUBP1;ENSG00000103274|ENST00000283027|NUBP1	nc|ENSG00000103274|P53384-2|NUBP1	nc|ENSG00000103274|P53384-2|NUBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	612.1968383789062	2	612.798403	1223.58225	-0.43467	-0.00026636	0.41642	0.00025518	-0.018243	-1.1179E-05	612.7988019259668	46.427	0.91398	47.192	46.603	47.517	0.76519					30	17	2	0	0	0	0.90584	1	17487	17487		22.736	2.2827	1	2923500			24899	2440	18002	18134	24379	24379					-0.02059497081813788
KGRAAATH	8	Unmodified	_KGRAAATH_					0	0	0			REV__ENSG00000170209|ENST00000303941|ANKK1	REV__ENSG00000170209|ENST00000303941|ANKK1	MULTI-MSMS	A375_MHC_IP_R1	1	406.6302795410156	2	406.230294	810.446034	-0.30267	-0.00012295	0.48296	0.00019619	0.18029	7.324E-05	406.23040845952806	99.433	2.4848	99.433	97.44	99.925	0					96	48	3	0	0	0	0.7779	1	36041	36041		2.5775	2.5775	1	4611700	+		24900	20974	18003	18135	24380	24380					0.0332289798882357
KGRFDVRW	8	Unmodified	_KGRFDVRW_					0	0	0		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2;ENST00000604759.1_1_14:39684672-39685536:+|nuORF	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-SECPEP	A375_MHC_IP_R1	1	355.5978698730469	3	355.198042	1062.5723	-0.28757	-0.00010214	-0.26746	-9.5002E-05	-0.55503	-0.00019714	355.1979065969678	36.752	0.55688	36.752	36.439	36.996	0					18	10	2	0	0	0	0.95424	1	12323	12323		15.248	12.966	1	7484800			24901	9273	18004	18136	24381	24381					0.04351404494127564
KGRFDVRW	8	Unmodified	_KGRFDVRW_					0	0	0		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2;ENST00000604759.1_1_14:39684672-39685536:+|nuORF	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-SECPEP	A375_MHC_IP_R2	2	355.59759521484375	3	355.198042	1062.5723	-0.40398	-0.00014349	-0.037368	-1.3273E-05	-0.44135	-0.00015677	355.19797629814656	35.757	0.55824	36.52	36.183	36.741	0.76338					25	10	3	0	0	0	0.95424	1	12960	12960		20.415	14.209	1	7452400			24902	9273	18004	18136	24382	24382					0.04351404494127564
KGRGAAPV	8	Unmodified	_KGRGAAPV_					0	0	0		ENST00000506161.5_1_5:176923705-176923774:-|nuORF	ENST00000506161.5_1_5:176923705-176923774:-|nuORF	ENST00000506161.5_1_5:176923705-176923774:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	378.60858154296875	2	378.229762	754.444972	0.73198	0.00027686	0.051319	1.9411E-05	0.7833	0.00029627	378.22976219457183	48.464	0.45517	48.464	48.274	48.729	0					11	8	2	0	0	0	0.972	1	17059	17059		5.7604	3.1829	1	1341600			24903	12853	18005	18137	24383	24383					0.057926836199385434
KGRIIPGA	8	Unmodified	_KGRIIPGA_					0	0	0		ENSG00000157851|ENST00000288699|DPYSL5	ENSG00000157851|ENST00000288699|DPYSL5	ENSG00000157851|ENST00000288699|DPYSL5	MULTI-SECPEP	A375_MHC_IP_R2	2	406.6191711425781	2	406.261062	810.507572	-0.36656	-0.00014892	0.30928	0.00012565	-0.057278	-2.327E-05	406.2610979815724	26.443	0.45663	27.103	26.957	27.414	0.65992					10	8	2	0	0	0	0.972	1	8883	8883		2.0598	0	1	1305500			24904	6271	18006	18138	24384	24384					0.09473829688124624
KGRKIRRHKK	10	Unmodified	_KGRKIRRHKK_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MSMS	A375_MHC_IP_R1	1	653.9374389648438	2	653.936371	1305.85819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.304	1	19.304	18.804	19.804	0								0	0	0	0.15629	1	4672	4672		0.40072	0.050084	1				24905	8951	18007	18139	24385	24385					0.21749464067238478
KGRRNRRWWMW	11	Unmodified	_KGRRNRRWWMW_					0	0	0			REV__ENSG00000158220|ENST00000389567|ESYT3	REV__ENSG00000158220|ENST00000389567|ESYT3	MULTI-MSMS	A375_MHC_IP_R1	1	545.3584594726562	3	544.624872	1630.85279	-0.42173	-0.00022969	-0.34557	-0.00018821	-0.7673	-0.00041789	544.6245619383413	43.361	0.50862	43.361	43.095	43.603	0					18	9	3	0	0	0	0.73795	1	15065	15065		0.45452	0.45452	1	6924900	+		24906	20066	18008	18140	24386	24386					0.0625941721309573
KGSDVHGIVVI	11	Unmodified	_KGSDVHGIVVI_					0	0	0			REV__EEF1A1|p.F424Cfs*3|1|0.17|ENSG00000156508|chr6:73517924-73517928|AGCAA/-|frameshift_variant	REV__EEF1A1|p.F424Cfs*3|1|0.17|ENSG00000156508|chr6:73517924-73517928|AGCAA/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	375.2683410644531	3	375.220513	1122.63971	0.060959	2.2873E-05	2.3793	0.00089275	2.4402	0.00091563	375.5569919348952	35.317	0.50531	36.081	35.878	36.384	0.76338					14	9	2	0	0	0	0.63737	1	12781	12781		12.228	2.4633	1	986160	+		24907	16061	18009	18141	24387	24387					0.08329389914433705
KGSGSRGG	8	Unmodified	_KGSGSRGG_					0	0	0			REV__ENST00000588072.5_1_18:11908402-11908690:-|nuORF	REV__ENST00000588072.5_1_18:11908402-11908690:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	705.5389404296875	1	705.363827	704.35655	-0.48513	-0.00034219	-0.43056	-0.0003037	-0.91569	-0.00064589	705.3646073907662	118.05	0.20279	118.05	117.92	118.12	0					6	3	2	0	0	0	0.972	1	43424	43424		0	0	1	2264400	+		24908	26410	18010	18142	24388	24388					-0.0074535669052693265
KGSITHIVVN	10	Unmodified	_KGSITHIVVN_					0	0	0			REV__tr|U7SWE4|U7SWE4_FUSNUAminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01001PE=3SV=1	REV__tr|U7SWE4|U7SWE4_FUSNUAminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01001PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1740112304688	2	534.314023	1066.61349	-0.99495	-0.00053162	-0.00016813	-8.9835E-08	-0.99512	-0.00053171	534.3137149316251	51.543	0.45719	52.296	51.966	52.423	0.75225					10	8	2	0	0	0	0.91909	1	19321	19321		9.3831	2.0939	1	1467000	+		24909	28602	18011	18143	24389	24389					0.08285120742948493
KGSPDPDHYL	10	Unmodified	_KGSPDPDHYL_					0	0	0			REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3	REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3	MULTI-SECPEP	A375_MHC_IP_R1	1	377.6275329589844	3	376.848856	1127.52474	0.035139	1.3242E-05	-0.27442	-0.00010342	-0.23928	-9.0173E-05	376.8487427668897	26.691	0.90746	26.691	26.423	27.331	0					31	17	3	0	0	0	0.72086	1	8052	8052		20.581	5.6238	1	7363400	+		24910	16478	18012	18144	24390	24390					-0.033923392873930425
KGSPDPDHYL	10	Unmodified	_KGSPDPDHYL_					0	0	0			REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3	REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3	MULTI-SECPEP	A375_MHC_IP_R2	2	377.2484130859375	3	376.848856	1127.52474	-0.20609	-7.7664E-05	-0.26881	-0.0001013	-0.4749	-0.00017896	376.84855257630056	26.092	0.81226	26.752	26.551	27.363	0.65992					30	15	4	0	0	0	0.8125	1	8802	8802		20.581	15.178	1	7497200	+		24911	16478	18012	18144	24391	24391					-0.033923392873930425
KGTESIKRLIW	11	Unmodified	_KGTESIKRLIW_					0	0	0			REV__ENST00000261249.6_1_14:61446550-61447716:-|nuORF	REV__ENST00000261249.6_1_14:61446550-61447716:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	445.00067138671875	3	444.266233	1329.77687	-0.51842	-0.00023032	0.29695	0.00013193	-0.22146	-9.8389E-05	444.60050829656353	51.195	0.40591	51.947	51.763	52.169	0.75225					16	7	3	0	0	0	0.73795	1	19295	19295		1.3296	0	1	2553500	+		24912	23183	18013	18145	24392	24392					0.12517298794000453
KGTRRRGKF	9	Unmodified	_KGTRRRGKF_					0	0	0			REV__ENST00000490689.3_1_3:157821611-157821770:-|nuORF	REV__ENST00000490689.3_1_3:157821611-157821770:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	553.7373657226562	2	553.338698	1104.66284	-0.79294	-0.00043876	-0.6284	-0.00034772	-1.4213	-0.00078648	553.3381142251342	132.21	0.35088	132.21	132.03	132.38	0					11	6	3	0	0	0	0.8028	1	50984	50984		0.45834	0.45834	1	6301500	+		24913	25389	18014	18146	24393	24393					0.11469873542409914
KGTRRRGKF	9	Unmodified	_KGTRRRGKF_					0	0	0			REV__ENST00000490689.3_1_3:157821611-157821770:-|nuORF	REV__ENST00000490689.3_1_3:157821611-157821770:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	553.338698	1104.66284	-0.74235	-0.00041077	-0.83209	-0.00046043	-1.5744	-0.0008712	553.3380195708158	132.04	0.2509	132.23	132.1	132.35	0.18954	0.011556	-0.0001049	NaN	0.45834	11	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3776700	+		24914	25389	18014	18146							0.11469873542409914
KGTSVVKVL	9	Unmodified	_KGTSVVKVL_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	A375_MHC_IP_R1	1	466.2024230957031	2	465.80276	929.590967	-0.30833	-0.00014362	-0.028013	-1.3049E-05	-0.33634	-0.00015667	465.8026930800211	31.242	0.55617	31.242	31.009	31.565	0					23	10	3	0	0	0	0.010044	1	9980	9980		125.04	13.751	1	8892100			24915	1791	18015	18147	24394	24394					0.12335521345323741
KGTSVVKVL	9	Unmodified	_KGTSVVKVL_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	A375_MHC_IP_R2	2	466.20263671875	2	465.80276	929.590967	-0.68161	-0.0003175	0.22984	0.00010706	-0.45176	-0.00021043	465.8027707150021	30.278	0.7074	30.996	30.809	31.517	0.71857					26	13	3	0	0	0	0.011364	1	10639	10639		97.741	12.469	1	8051100			24916	1791	18015	18147	24395	24395					0.12335521345323741
KGTTSSRSFK	10	Unmodified	_KGTTSSRSFK_					0	0	0		ENSG00000143217|ENST00000368012|NECTIN4	ENSG00000143217|ENST00000368012|NECTIN4	ENSG00000143217|ENST00000368012|NECTIN4	MULTI-SECPEP	A375_MHC_IP_R1	1	550.1983642578125	2	549.798737	1097.58292	-0.3605	-0.0001982	0.4178	0.00022971	0.057305	3.1506E-05	549.7987569659942	20.975	0.45699	20.975	20.742	21.199	0					16	8	3	0	0	0	0.27758	1	5448	5448		61.602	12.048	1	3231000			24917	5359	18016	18148	24396	24396					0.03803342357900874
KGVGRSFL	8	Unmodified	_KGVGRSFL_					0	0	0			REV__ENST00000252512.13_1_8:21862617-21862734:+|nuORF	REV__ENST00000252512.13_1_8:21862617-21862734:+|nuORF	MSMS	A375_MHC_IP_R1	1	432.2993469238281	2	432.25852	862.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.213	1	74.213	73.713	74.713	0								0	0	0	0.16876	1	27031	27031		9.3474	0	1		+		24918	23129	18017	18149	24397	24397					0.06573525825501747
KGVLISHRYK	10	Unmodified	_KGVLISHRYK_					0	0	0		ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	MULTI-MSMS	A375_MHC_IP_R1	1	401.16558837890625	3	400.911902	1199.71388	-0.34335	-0.00013765	0.78702	0.00031552	0.44367	0.00017787	400.91210574213784	58.247	0.35535	58.247	58.075	58.43	0					8	6	2	0	0	0	0.66857	1	20880	20880		15.739	7.2943	1	838610			24919	7335	18018	18150	24398	24398					0.12200777796579132
KGWDGYDVQW	10	Unmodified	_KGWDGYDVQW_					0	0	0		ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	MULTI-SECPEP	A375_MHC_IP_R2	2	627.6834716796875	2	627.28292	1252.55129	-0.75872	-0.00047593	-0.18644	-0.00011695	-0.94516	-0.00059288	627.2831815337905	88.199	0.50594	88.931	88.722	89.228	0.7318					18	9	3	0	0	0	0.57412	1	33558	33558		37.075	11.675	1	2939700			24920	4535	18019	18151	24399	24399					-0.06488650396045159
KGYDGVKRW	9	Unmodified	_KGYDGVKRW_					0	0	0		ENSG00000161956|ENST00000321337|SENP3	ENSG00000161956|ENST00000321337|SENP3	ENSG00000161956|ENST00000321337|SENP3	MULTI-MSMS	A375_MHC_IP_R1	1	370.9369201660156	3	370.201452	1107.58253	0.49146	0.00018194	0.96913	0.00035877	1.4606	0.00054071	370.5362599429137	20.86	0.96815	20.86	20.435	21.403	0					52	18	4	0	0	0	0.71416	1	5396	5396		3.5871	0	1	5420800			24921	6497	18020	18152	24400	24400					0.03303967428701071
KGYNKLNQSL	10	Unmodified	_KGYNKLNQSL_					0	0	0		ENSG00000269067|ENST00000594710|ZNF728	ENSG00000269067|ENST00000594710|ZNF728	ENSG00000269067|ENST00000594710|ZNF728	MULTI-MSMS	A375_MHC_IP_R2	2	388.9488830566406	3	388.8839	1163.62987	-0.42497	-0.00016526	-1.0655	-0.00041434	-1.4904	-0.0005796	388.8834949159134	34.266	0.66085	35.018	34.904	35.565	0.75225					14	12	2	0	0	0	0.70312	1	12392	12392		10.899	0.74838	1	2536900			24922	9977	18021	18153	24401	24401					0.054602019090452814
KGYQVPVL	8	Unmodified	_KGYQVPVL_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;RBBP6|p.E1056Nfs*55|1|0.28|ENSG00000122257|chr16:24569855-24569855|T/-|frameshift_variant	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MULTI-MSMS	A375_MHC_IP_R1	1	452.6685791015625	2	452.268553	902.522553	-0.1056	-4.7762E-05	0.36986	0.00016728	0.26426	0.00011951	452.2685782898515	63.037	0.51182	63.037	62.762	63.274	0					20	9	3	0	0	0	0.28913	1	22770	22770		59.795	2.3239	1	2788600			24923	3771	18022	18154	24402	24402					0.06739276765483737
KHEQPLTW	8	Unmodified	_KHEQPLTW_					0	0	0		ENST00000428780.2_1_10:1068608-1089667:+|nuORF	ENST00000428780.2_1_10:1068608-1089667:+|nuORF	ENST00000428780.2_1_10:1068608-1089667:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	520.1714477539062	2	519.771991	1037.52943	-0.42877	-0.00022287	0.20867	0.00010846	-0.22011	-0.00011441	519.7719761336355	97.429	0.91127	97.429	96.883	97.794	0					26	17	3	0	0	0	0.92636	1	35798	35798		16.942	6.1184	1	2695700			24924	11839	18023	18155	24403	24403					0.012165896460373915
KHEWWRWRGRW	11	Unmodified	_KHEWWRWRGRW_					0	0	0			REV__ENST00000361226.7_1_9:35546604-35546643:+|nuORF	REV__ENST00000361226.7_1_9:35546604-35546643:+|nuORF	MSMS	A375_MHC_IP_R2	2	561.653564453125	3	561.623637	1681.84908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.731	1	88.462	87.962	88.962	0.7318								0	0	0	0.16358	1	33372	33372		0.094841	0	1		+		24925	23905	18024	18156	24404	24404					0.03543070710884422
KHFGGEMAV	9	Unmodified	_KHFGGEMAV_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-MSMS	A375_MHC_IP_R2	2	975.8729248046875	1	975.471663	974.464386	0.071749	6.9989E-05	-0.51555	-0.00050291	-0.44381	-0.00043292	975.4707863766878	98.821	0.6572	99.581	99.201	99.858	0.75977					18	12	2	0	0	0	0.65721	1	37569	37569		10.824	1.4765	1	6143300			24926	2045	18025	18157	24405	24405					-0.02386728151452644
KHGFLRHTV	9	Unmodified	_KHGFLRHTV_					0	0	0		nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1	nc|ENSG00000107404|O14640-2|DVL1	nc|ENSG00000107404|O14640-2|DVL1	MULTI-SECPEP	A375_MHC_IP_R1	1	365.94561767578125	3	365.545442	1093.6145	0.090351	3.3028E-05	0.21979	8.0341E-05	0.31014	0.00011337	365.54551577989326	28.179	0.25136	28.179	28.037	28.288	0					11	4	3	0	0	0	0.63327	1	8694	8694		3.3196	3.3196	1	3357000			24927	2738	18026	18158	24406	24406					0.07143379902504421
KHGGAPGR	8	Unmodified	_KHGGAPGR_					0	0	0		ENST00000326181.10_1_16:2227686-2227956:+|nuORF	ENST00000326181.10_1_16:2227686-2227956:+|nuORF	ENST00000326181.10_1_16:2227686-2227956:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	390.6173400878906	2	390.217186	778.419819	-0.14861	-5.799E-05	0.33418	0.0001304	0.18557	7.2414E-05	390.2172379327685	103.1	2.7945	103.87	102.67	105.46	0.76428					115	54	3	0	0	0	0.77839	1	39336	39336		0.79363	0	1	5509500			24928	10729	18027	18159	24407	24407					0.021746288173744688
KHGGAPGR	8	Unmodified	_KHGGAPGR_					0	0	0		ENST00000326181.10_1_16:2227686-2227956:+|nuORF	ENST00000326181.10_1_16:2227686-2227956:+|nuORF	ENST00000326181.10_1_16:2227686-2227956:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	390.217186	778.419819	0.20113	7.8485E-05	0.47863	0.00018677	0.67976	0.00026525	390.21727230532457	103.77	3.1474	103.77	102.2	105.35	0	-0.046115	6.0294E-05	NaN	0.79363	122	61	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4366900			24929	10729	18027	18159							0.021746288173744688
KHGWPIWKG	9	Unmodified	_KHGWPIWKG_					0	0	0		ENST00000512866.5_1_6:83892613-83892655:-|nuORF;ENST00000513973.5_1_6:83892588-83892654:-|nuORF	ENST00000512866.5_1_6:83892613-83892655:-|nuORF	ENST00000512866.5_1_6:83892613-83892655:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	370.6069641113281	3	370.206538	1107.59778	0.12104	4.4808E-05	-0.37918	-0.00014038	-0.25815	-9.5568E-05	370.20692268437125	51.512	0.6598	52.264	51.864	52.524	0.75225					15	12	2	0	0	0	0.75764	1	19410	19410		0.96228	0.26461	1	1533000			24930	12922	18028	18160	24408	24408					0.04828879016531573
KHIEESST	8	Unmodified	_KHIEESST_					0	0	0			REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-SECPEP	A375_MHC_IP_R2	2	466.1297912597656	2	465.729989	929.445425	-0.4837	-0.00022527	-1.0732	-0.00049983	-1.5569	-0.00072511	465.72965404639757	85.954	0.4583	86.687	86.54	86.998	0.733					12	8	2	0	0	0	0.972	1	32729	32729		12.532	4.6214	1	1287800	+		24931	20338	18029	18161	24409	24409					-0.022119862415138414
KHIEESST	8	Unmodified	_KHIEESST_					0	0	0			REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	465.729989	929.445425	-0.37905	-0.00017653	-1.1339	-0.00052807	-1.5129	-0.00070461	465.7295281789398	86.842	0.505	86.842	86.578	87.083	0	0.077789	-1.4301E-05	NaN	12.532	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1203900	+		24932	20338	18029	18161							-0.022119862415138414
KHKQFKLKL	9	Unmodified	_KHKQFKLKL_					0	0	0			REV__CHD8|p.T2264K|1|0.19|ENSG00000100888|chr14:21391927-21391927|G/T|missense_variant	REV__CHD8|p.T2264K|1|0.19|ENSG00000100888|chr14:21391927-21391927|G/T|missense_variant	MSMS	A375_MHC_IP_R2	2	390.6549072265625	3	390.588759	1168.74445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.011	1	26.671	26.171	27.171	0.65992								0	0	0	0.15486	1	8751	8751		2.4985	0.21571	1		+		24933	15660	18030	18162	24410	24410					0.16682556181649488
KHLAELNHQ	9	Unmodified	_KHLAELNHQ_					0	0	0		ENSG00000197746|ENST00000394936|PSAP;nc|ENSG00000197746|P07602-2|PSAP;nc|ENSG00000197746|P07602-3|PSAP	ENSG00000197746|ENST00000394936|PSAP	ENSG00000197746|ENST00000394936|PSAP	MSMS	A375_MHC_IP_R1	1	545.1920776367188	2	545.293622	1088.57269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.55	1	133.55	133.05	134.05	0								0	0	0	0.15142	1	51499	51499		19.257	0	1				24934	9190	18031	18163	24411	24411					0.031947794233246896
KHLAPDQI	8	Unmodified	_KHLAPDQI_					0	0	0		ENSG00000157796|ENST00000399820|WDR19;ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENSG00000157796|ENST00000399820|WDR19	ENSG00000157796|ENST00000399820|WDR19	MULTI-MSMS	A375_MHC_IP_R1	1	921.4823608398438	1	921.515242	920.507966	-0.30273	-0.00027897	-0.92495	-0.00085236	-1.2277	-0.0011313	921.5129234011685	130.44	0.2531	130.44	130.31	130.57	0					6	4	2	0	0	0	0.74466	1	50171	50171		21.747	0.87544	1	18256000			24935	6266	18032	18164	24412	24412					0.04453204617323081
KHLAPDQI	8	Unmodified	_KHLAPDQI_					0	0	0		ENSG00000157796|ENST00000399820|WDR19;ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENSG00000157796|ENST00000399820|WDR19	ENSG00000157796|ENST00000399820|WDR19	MULTI-MATCH	A375_MHC_IP_R2	2		1	921.515242	920.507966	-0.33698	-0.00031053	-4.9964	-0.0046042	-5.3334	-0.0049148	921.5106312909013	130.21	0.25322	130.42	130.3	130.55	0.2142	-0.0064197	-0.00055846	NaN	21.747	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12027000			24936	6266	18032	18164							0.04453204617323081
KHLFSFLF	8	Unmodified	_KHLFSFLF_					0	0	0			REV__nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	REV__nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	MULTI-SECPEP	A375_MHC_IP_R1	1	519.6763305664062	2	519.792195	1037.56984	-0.44408	-0.00023083	-0.75584	-0.00039288	-1.1999	-0.00062371	519.7916239300936	39.338	0.45652	39.338	39.085	39.541	0					14	8	2	0	0	0	0.972	1	13425	13425		9.3474	9.3474	1	1586600	+		24937	27500	18033	18165	24413	24413					0.05255556036445341
KHLILVVNY	9	Unmodified	_KHLILVVNY_					0	0	0		nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46;ENST00000503946.1_1_5:134125872-134147057:+|nuORF	nc|ENSG00000145833|Q7L014|DDX46	nc|ENSG00000145833|Q7L014|DDX46	MULTI-SECPEP	A375_MHC_IP_R2	2	549.6419067382812	2	549.837134	1097.65972	-0.59522	-0.00032727	2.4101	0.0013252	1.8149	0.00099791	549.8398324109653	46.827	0.20171	47.588	47.462	47.664	0.76128					5	3	2	0	0	0	0.80005	1	17567	17567		4.756	4.756	1	660250			24938	5586	18034	18166	24414	24414					0.11479185645021062
KHLLRRRARRK	11	Unmodified	_KHLLRRRARRK_					0	0	0			REV__ENSG00000153822|ENST00000392671|KCNJ16	REV__ENSG00000153822|ENST00000392671|KCNJ16	MSMS	A375_MHC_IP_R1	1	745.639892578125	2	745.492376	1488.9702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.19	1	125.19	124.69	125.69	0								0	0	0	0.16334	1	47493	47493		1.3295	0	1		+		24939	19851	18035	18167	24415	24415					0.24527318144237142
KHNMDIGTWDN	11	Unmodified	_KHNMDIGTWDN_					0	0	0		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2;nc|ENSG00000149658|Q9BYJ9-2|YTHDF1;ENSG00000149658|ENST00000370339|YTHDF1	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000149658|ENST00000370339|YTHDF1	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-SECPEP	A375_MHC_IP_R1	1	444.26556396484375	3	444.199671	1329.57718	-0.3756	-0.00016684	0.78633	0.00034929	0.41072	0.00018244	444.2002134453904	23.559	0.3057	23.559	23.432	23.737	0					6	5	2	0	0	0	0.99819	1	6542	6542		5.8681	0	1	3553300			24940	9273;5825	18036	18168	24416	24416					-0.07442124216049706
KHPPRVDEV	9	Unmodified	_KHPPRVDEV_					0	0	0			REV__MAP4K4|p.S953Kfs*30|1|0.04|ENSG00000071054|chr2:101877028-101877029|-/AGTGGCCTGATGCTGCTGGACAGAA|frameshift_variant	REV__MAP4K4|p.S953Kfs*30|1|0.04|ENSG00000071054|chr2:101877028-101877029|-/AGTGGCCTGATGCTGCTGGACAGAA|frameshift_variant	MSMS	A375_MHC_IP_R1	1	538.7266845703125	2	538.795998	1075.57744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.56	1	133.56	133.06	134.06	0								0	0	0	0.15486	1	51502	51502		9.3831	0	1		+		24941	16584	18037	18169	24417	24417					0.04267663566088231
KHQALQTKIKD	11	Unmodified	_KHQALQTKIKD_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST;REV__nc|ENSG00000151914|Q03001-8|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-MSMS	A375_MHC_IP_R1	1	437.3291015625	3	437.257738	1308.75138	-0.43774	-0.00019141	-0.52845	-0.00023107	-0.96619	-0.00042247	437.2575026130184	135.9	1.127	135.9	135.64	136.77	0					29	21	2	0	0	0	0.73795	1	52298	52298		0.45452	0	1	992640	+		24942	19783;27289	18038	18170	24418	24418					0.10935824271518868
KHQFTKGAF	9	Unmodified	_KHQFTKGAF_					0	0	0			REV__tr|U7SNH6|U7SNH6_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01762PE=4SV=1	REV__tr|U7SNH6|U7SNH6_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01762PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	532.1857299804688	2	532.287808	1062.56106	-0.62321	-0.00033173	-0.12834	-6.8312E-05	-0.75154	-0.00040004	532.2879621234914	64.443	1.017	65.183	64.496	65.513	0.74022					35	19	2	0	0	0	0.43185	1	24453	24453		23.148	2.2772	1	5048400	+		24943	28327	18039	18171	24419	24419					0.03228582399992774
KHQKRKKRRKR	11	Unmodified	_KHQKRKKRRKR_					0	0	0		nc|ENSG00000151322|Q8IXF0-4|NPAS3;nc|ENSG00000151322|Q8IXF0-2|NPAS3;nc|ENSG00000151322|Q8IXF0-3|NPAS3;ENSG00000151322|ENST00000356141|NPAS3	nc|ENSG00000151322|Q8IXF0-4|NPAS3	nc|ENSG00000151322|Q8IXF0-4|NPAS3	MSMS	A375_MHC_IP_R1	1	775.3098754882812	2	775.010933	1548.00731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.7	1	126.7	126.2	127.2	0								0	0	0	0.1636	1	48429	48429		0	0	1				24944	5895	18040	18172	24420	24420					0.2552298968996638
KHRLSPRYT	9	Unmodified	_KHRLSPRYT_					0	0	0		ENST00000357575.8_1_18:77663594-77663714:-|nuORF	ENST00000357575.8_1_18:77663594-77663714:-|nuORF	ENST00000357575.8_1_18:77663594-77663714:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	579.729248046875	2	579.330539	1156.64652	-0.24941	-0.00014449	-2.2659	-0.0013127	-2.5154	-0.0014572	579.3288894404973	127.36	1.162	127.63	126.6	127.77	0.26593					32	22	2	0	0	0	0.70886	1	49826	49826		6.2058	0	1	12482000			24945	10985	18041	18173	24421	24421					0.07446747585640878
KHVLSERS	8	Unmodified	_KHVLSERS_					0	0	0		ENST00000600284.5_1_19:50490096-50500767:-|nuORF;nc|ENSG00000105053|Q8IV63-2|VRK3;ENST00000594090.5_1_19:50491627-50519408:-|nuORF;nc|ENSG00000105053|Q8IV63-3|VRK3;ENSG00000105053|ENST00000316763|VRK3;VRK3|p.S273N|1|0.38|ENSG00000105053|chr19:49994866-49994866|C/T|missense_variant	ENST00000600284.5_1_19:50490096-50500767:-|nuORF	ENST00000600284.5_1_19:50490096-50500767:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	478.6698303222656	2	478.269616	954.524678	-0.53783	-0.00025723	0.15831	7.5715E-05	-0.37952	-0.00018151	478.269651949844	118.84	2.2802	118.84	118.42	120.7	0					80	44	2	0	0	0	0.77562	3	43777	43777;44049;44659		10.824	4.6181	1	33500000			24946	2564	18042	18174	24422;24423;24424	24422					0.045597055032772005
KHVLSERS	8	Unmodified	_KHVLSERS_					0	0	0		ENST00000600284.5_1_19:50490096-50500767:-|nuORF;nc|ENSG00000105053|Q8IV63-2|VRK3;ENST00000594090.5_1_19:50491627-50519408:-|nuORF;nc|ENSG00000105053|Q8IV63-3|VRK3;ENSG00000105053|ENST00000316763|VRK3;VRK3|p.S273N|1|0.38|ENSG00000105053|chr19:49994866-49994866|C/T|missense_variant	ENST00000600284.5_1_19:50490096-50500767:-|nuORF	ENST00000600284.5_1_19:50490096-50500767:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	478.66900634765625	2	478.269616	954.524678	-0.45582	-0.000218	0.11898	5.6904E-05	-0.33684	-0.0001611	478.26960222047234	118.52	2.0297	119.13	118.44	120.47	0.60909					59	39	2	0	0	0	0.77583	2	45431	44816;45431		10.074	3.9658	1	47742000			24947	2564	18042	18174	24425;24426	24426					0.045597055032772005
KHVLSERS	8	Unmodified	_KHVLSERS_					0	0	0		ENST00000600284.5_1_19:50490096-50500767:-|nuORF;nc|ENSG00000105053|Q8IV63-2|VRK3;ENST00000594090.5_1_19:50491627-50519408:-|nuORF;nc|ENSG00000105053|Q8IV63-3|VRK3;ENSG00000105053|ENST00000316763|VRK3;VRK3|p.S273N|1|0.38|ENSG00000105053|chr19:49994866-49994866|C/T|missense_variant	ENST00000600284.5_1_19:50490096-50500767:-|nuORF	ENST00000600284.5_1_19:50490096-50500767:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	478.669921875	2	478.269616	954.524678	-0.54124	-0.00025886	0.12424	5.9418E-05	-0.417	-0.00019944	478.2694977093465	123.08	1.7722	123.46	122.87	124.64	0.3766					45	34	3	0	0	0	0.77562	1	47250	47250		10.824	4.6181	1	18748000			24948	2564	18042	18174	24427	24427					0.045597055032772005
KHVLSERS	8	Unmodified	_KHVLSERS_					0	0	0		ENST00000600284.5_1_19:50490096-50500767:-|nuORF;nc|ENSG00000105053|Q8IV63-2|VRK3;ENST00000594090.5_1_19:50491627-50519408:-|nuORF;nc|ENSG00000105053|Q8IV63-3|VRK3;ENSG00000105053|ENST00000316763|VRK3;VRK3|p.S273N|1|0.38|ENSG00000105053|chr19:49994866-49994866|C/T|missense_variant	ENST00000600284.5_1_19:50490096-50500767:-|nuORF	ENST00000600284.5_1_19:50490096-50500767:-|nuORF	MSMS	A375_MHC_IP_R2	2	478.6690979003906	2	478.269616	954.524678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.92	1	120.45	119.95	120.95	0.5321								0	0	0	0.16876	1	45708	45708		10.074	3.8681	1				24949	2564	18042	18174	24428	24428					0.045597055032772005
KHWGKLPWKRK	11	Unmodified	_KHWGKLPWKRK_					0	0	0			REV__nc|ENSG00000006025|Q9BZF2-2|OSBPL7;REV__nc|ENSG00000070882|Q9H4L5-8|OSBPL3;REV__nc|ENSG00000079156|Q9BZF3-2|OSBPL6	REV__nc|ENSG00000070882|Q9H4L5-8|OSBPL3	MSMS	A375_MHC_IP_R1	1	732.8429565429688	2	732.440955	1462.86736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.48	1	142.48	141.98	142.98	0								0	0	0	0.16354	1	54668	54668		0.30703	0.03801	1		+		24950	16128;16582;16723	18043	18175	24429	24429					0.15443812632906884
KHYHKEYRQRY	11	Unmodified	_KHYHKEYRQRY_					0	0	0		ENST00000600588.1_1_19:6593418-6593715:+|nuORF	ENST00000600588.1_1_19:6593418-6593715:+|nuORF	ENST00000600588.1_1_19:6593418-6593715:+|nuORF	MSMS	A375_MHC_IP_R1	1	536.6784057617188	3	536.611174	1606.81169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.663	1	71.663	71.163	72.163	0								0	0	0	0.16358	1	26048	26048		0.094841	0	1				24951	13867	18044	18176	24430	24430					0.03255934654634984
KHYRIGLDEKY	11	Unmodified	_KHYRIGLDEKY_					0	0	0		ENSG00000250821|ENST00000636125|EXOC1L	ENSG00000250821|ENST00000636125|EXOC1L	ENSG00000250821|ENST00000636125|EXOC1L	MULTI-MSMS	A375_MHC_IP_R1	1	711.7803344726562	2	711.380426	1420.7463	-0.59556	-0.00042367	0.24508	0.00017435	-0.35048	-0.00024932	711.3807468831824	57.746	0.30475	57.746	57.568	57.873	0					9	5	2	0	0	0	0.7362	1	20762	20762		2.9952	0.49676	1	2578800			24952	9852	18045	18177	24431	24431					0.052755204089407925
KIAAAITN	8	Unmodified	_KIAAAITN_					0	0	0			REV__tr|U7SST0|U7SST0_FUSNUElectrontransferflavoproteinbetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01366PE=3SV=1	REV__tr|U7SST0|U7SST0_FUSNUElectrontransferflavoproteinbetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01366PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	401.16552734375	2	401.245078	800.475603	-0.33946	-0.00013621	0.41398	0.00016611	0.074519	2.9901E-05	401.24519390460966	61.457	0.66332	61.457	61.176	61.839	0					17	12	2	0	0	0	0.73622	1	22049	22049		24.021	1.2843	1	4876100	+		24953	28447	18046	18178	24432	24432					0.06738417214307901
KIADFGWSV	9	Unmodified	_KIADFGWSV_					0	0	0		ENSG00000087586|ENST00000395915|AURKA;nc|ENSG00000105146|Q9UQB9-2|AURKC;nc|ENSG00000105146|Q9UQB9-3|AURKC;ENSG00000105146|ENST00000302804|AURKC;nc|ENSG00000178999|Q96GD4-4|AURKB;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB;nc|ENSG00000178999|Q96GD4-5|AURKB	ENSG00000087586|ENST00000395915|AURKA;nc|ENSG00000178999|Q96GD4-4|AURKB	nc|ENSG00000178999|Q96GD4-4|AURKB	MULTI-MSMS	A375_MHC_IP_R1	1	512.1687622070312	2	511.768917	1021.52328	-0.23497	-0.00012025	-0.11271	-5.7682E-05	-0.34769	-0.00017794	511.7687692542738	92.49	0.96445	92.49	92.16	93.125	0					51	18	4	0	0	0	0.0090297	1	33955	33955		99.755	63.628	1	12739000			24954	1879;8196	18047	18179	24433	24433					0.013380714145228012
KIADFGWSV	9	Unmodified	_KIADFGWSV_					0	0	0		ENSG00000087586|ENST00000395915|AURKA;nc|ENSG00000105146|Q9UQB9-2|AURKC;nc|ENSG00000105146|Q9UQB9-3|AURKC;ENSG00000105146|ENST00000302804|AURKC;nc|ENSG00000178999|Q96GD4-4|AURKB;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB;nc|ENSG00000178999|Q96GD4-5|AURKB	ENSG00000087586|ENST00000395915|AURKA;nc|ENSG00000178999|Q96GD4-4|AURKB	nc|ENSG00000178999|Q96GD4-4|AURKB	MULTI-MSMS	A375_MHC_IP_R2	2	512.1682739257812	2	511.768917	1021.52328	-0.66398	-0.0003398	-0.086155	-4.4092E-05	-0.75013	-0.0003839	511.7688107139451	91.717	0.91143	92.452	92.122	93.033	0.7345					47	17	4	0	0	0	0.0096896	1	34853	34853		110.67	51.996	1	15273000			24955	1879;8196	18047	18179	24434	24434					0.013380714145228012
KIADGVNEI	9	Unmodified	_KIADGVNEI_					0	0	0		nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12;ENSG00000127947|ENST00000248594|PTPN12	nc|ENSG00000127947|Q05209-2|PTPN12	nc|ENSG00000127947|Q05209-2|PTPN12	MULTI-SECPEP	A375_MHC_IP_R1	1	480.1634826660156	2	479.763832	957.513111	-0.39796	-0.00019093	0.015364	7.371E-06	-0.38259	-0.00018355	479.7636470330384	40.787	0.40416	40.787	40.559	40.963	0					11	7	2	0	0	0	0.011405	1	14045	14045		99.755	3.6444	1	4358600			24956	4111	18048	18180	24435	24435					0.032654636892857525
KIADICERH	9	Unmodified	_KIADICERH_					0	0	0		GADL1|p.E286K|1|0.43|ENSG00000144644|chr3:30839044-30839044|C/T|missense_variant	GADL1|p.E286K|1|0.43|ENSG00000144644|chr3:30839044-30839044|C/T|missense_variant	GADL1|p.E286K|1|0.43|ENSG00000144644|chr3:30839044-30839044|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	362.59759521484375	3	362.190447	1083.54951	-0.24186	-8.7598E-05	-1.8741	-0.00067877	-2.1159	-0.00076637	362.1891153975827	41.561	0.30573	42.335	42.198	42.504	0.77451					8	5	2	0	0	0	0.76827	1	15496	15496		2.086	0.89267	1	657030			24957	14033	18049	18181	24436	24436					0.011080173143454886
KIADICERH	9	Unmodified	_KIADICERH_					0	0	0		GADL1|p.E286K|1|0.43|ENSG00000144644|chr3:30839044-30839044|C/T|missense_variant	GADL1|p.E286K|1|0.43|ENSG00000144644|chr3:30839044-30839044|C/T|missense_variant	GADL1|p.E286K|1|0.43|ENSG00000144644|chr3:30839044-30839044|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	362.190447	1083.54951	0.29304	0.00010614	-2.1657	-0.00078439	-1.8727	-0.00067826	362.5242575602835	42.438	0.35373	42.438	42.233	42.587	0	0.051331	-8.1785E-05	NaN	2.086	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1057300			24958	14033	18049	18181							0.011080173143454886
KIADKVLSV	9	Unmodified	_KIADKVLSV_					0	0	0		nc|ENSG00000137474|Q13402-5|MYO7A;nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;ENST00000605744.1_1_11:76918300-76919866:+|nuORF;ENST00000481328.7_1_11:76905078-76923312:+|nuORF	nc|ENSG00000137474|Q13402-5|MYO7A	nc|ENSG00000137474|Q13402-5|MYO7A	MULTI-SECPEP	A375_MHC_IP_R1	1	487.2078857421875	2	486.808042	971.601532	-0.22913	-0.00011154	0.26331	0.00012818	0.03418	1.6639E-05	486.80807958399373	38.586	0.51082	38.586	38.371	38.882	0					23	9	4	0	0	0	0.021951	1	13098	13098		103.82	7.7126	1	10424000			24959	4886	18050	18182	24437	24437					0.11459503999753906
KIADKVLSV	9	Unmodified	_KIADKVLSV_					0	0	0		nc|ENSG00000137474|Q13402-5|MYO7A;nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;ENST00000605744.1_1_11:76918300-76919866:+|nuORF;ENST00000481328.7_1_11:76905078-76923312:+|nuORF	nc|ENSG00000137474|Q13402-5|MYO7A	nc|ENSG00000137474|Q13402-5|MYO7A	MULTI-SECPEP	A375_MHC_IP_R2	2	487.2076416015625	2	486.808042	971.601532	-0.83414	-0.00040607	0.37477	0.00018244	-0.45937	-0.00022363	486.80814493059296	37.654	0.51219	38.429	38.175	38.687	0.77451					20	9	3	0	0	0	0.10362	1	13791	13791		72.968	23.035	1	10183000			24960	4886	18050	18182	24438	24438					0.11459503999753906
KIAELLENV	9	Unmodified	_KIAELLENV_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MULTI-SECPEP	A375_MHC_IP_R2	2	515.202392578125	2	514.802957	1027.59136	-0.75319	-0.00038774	0.039107	2.0132E-05	-0.71408	-0.00036761	514.802944657938	77.974	0.56353	78.716	78.416	78.98	0.74293					24	10	3	0	0	0	0.027055	1	29589	29589		91.085	0	1	9378400			24961	2429	18051	18183	24439	24439					0.0786689627452688
KIALACFKRM	10	Unmodified	_KIALACFKRM_					0	0	0		ENST00000439423.1_1_22:46453860-46453926:-|nuORF	ENST00000439423.1_1_22:46453860-46453926:-|nuORF	ENST00000439423.1_1_22:46453860-46453926:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	394.2590026855469	3	394.227957	1179.66204	-0.17527	-6.9096E-05	0.28209	0.00011121	0.10682	4.2111E-05	394.22803616357487	27.982	0.95745	27.982	27.533	28.491	0					59	18	4	0	0	0	0.71946	1	8655	8655		3.5871	3.5871	1	28819000			24962	11961	18052	18184	24440	24440					0.07939574786837511
KIALACFKRM	10	Unmodified	_KIALACFKRM_					0	0	0		ENST00000439423.1_1_22:46453860-46453926:-|nuORF	ENST00000439423.1_1_22:46453860-46453926:-|nuORF	ENST00000439423.1_1_22:46453860-46453926:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	394.25933837890625	3	394.227957	1179.66204	-0.19725	-7.7762E-05	0.38839	0.00015312	0.19114	7.5354E-05	394.22806309007666	27.187	0.96883	27.866	27.433	28.401	0.67857					52	18	4	0	0	0	0.71364	1	9408	9408		6.1918	3.1966	1	36013000			24963	11961	18052	18184	24441	24441					0.07939574786837511
KIAPNTPQL	9	Unmodified	_KIAPNTPQL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;NOMO1|p.Q465Kfs*4|1|0.07|ENSG00000103512|chr16:14863184-14863185|-/AAGAC|frameshift_variant	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	A375_MHC_IP_R1	1	491.68951416015625	2	491.290017	980.565481	-0.55045	-0.00027043	0.24149	0.00011864	-0.30895	-0.00015179	491.2900898083618	26.962	0.45067	26.962	26.728	27.179	0					16	8	3	0	0	0	0.077132	1	8101	8101		54.774	20.671	1	3829300			24964	2432	18053	18185	24442	24442					0.07442046822893644
KIAPNTPQL	9	Unmodified	_KIAPNTPQL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;NOMO1|p.Q465Kfs*4|1|0.07|ENSG00000103512|chr16:14863184-14863185|-/AAGAC|frameshift_variant	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-SECPEP	A375_MHC_IP_R1	1	491.6898498535156	2	491.290017	980.565481	-0.14026	-6.8906E-05	-0.23753	-0.00011669	-0.37778	-0.0001856	491.2898953950007	42.66	1.523	42.66	42.285	43.808	0					85	29	5	0	0	0	0.0059578	1	14742	14742		148.27	55.777	1	187390000			24965	2432	18053	18185	24443	24443					0.07442046822893644
KIAPNTPQL	9	Unmodified	_KIAPNTPQL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;NOMO1|p.Q465Kfs*4|1|0.07|ENSG00000103512|chr16:14863184-14863185|-/AAGAC|frameshift_variant	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	A375_MHC_IP_R2	2	491.6897888183594	2	491.290017	980.565481	-0.52452	-0.00025769	-0.14469	-7.1084E-05	-0.66921	-0.00032878	491.2899581829454	41.858	1.6795	42.633	42.249	43.928	0.77451					85	32	5	0	0	0	0.0023519	1	15471	15471		140.63	48.142	1	221170000			24966	2432	18053	18185	24444	24444					0.07442046822893644
KIAPNTPQL	9	Unmodified	_KIAPNTPQL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;NOMO1|p.Q465Kfs*4|1|0.07|ENSG00000103512|chr16:14863184-14863185|-/AAGAC|frameshift_variant	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-SECPEP	A375_MHC_IP_R2	2	491.68939208984375	2	491.290017	980.565481	-0.94539	-0.00046446	0.54089	0.00026574	-0.40449	-0.00019872	491.2901639426708	26.122	0.55912	26.782	26.602	27.161	0.65992					17	10	3	0	0	0	0.3213	1	8814	8814		46.021	22	1	2428900			24967	2432	18053	18185	24445	24445					0.07442046822893644
KIAQFLESV	9	Unmodified	_KIAQFLESV_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	A375_MHC_IP_R1	1	517.262451171875	2	517.797675	1033.5808	-0.49271	-0.00025513	-0.279	-0.00014447	-0.77172	-0.00039959	517.7975386037433	81.581	0.80976	81.581	81.303	82.113	0					25	15	2	0	0	0	0.037185	1	29806	29806		96.285	41.511	1	7833000			24968	3055	18054	18186	24446	24446					0.06534913620112093
KIAQFLESV	9	Unmodified	_KIAQFLESV_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	A375_MHC_IP_R2	2	518.197021484375	2	517.797675	1033.5808	-0.77799	-0.00040284	0.045777	2.3703E-05	-0.73222	-0.00037914	517.7976559531347	80.595	0.66278	81.34	81.062	81.724	0.74474					20	12	2	0	0	0	0.13064	1	30641	30641		39.95	26.335	1	8186200			24969	3055	18054	18186	24447	24447					0.06534913620112093
KIASLWDDVT	10	Unmodified	_KIASLWDDVT_					0	0	0			REV__nc|ENSG00000154928|P54762-5|EPHB1	REV__nc|ENSG00000154928|P54762-5|EPHB1	MULTI-MSMS	A375_MHC_IP_R2	2	573.6953735351562	2	574.303321	1146.59209	-0.51723	-0.00029705	-1.5726	-0.00090312	-2.0898	-0.0012002	574.303018571308	38.741	1.222	39.516	39.047	40.269	0.77451					42	23	3	0	0	0	0.36703	1	14294	14294		36.127	3.8215	1	8327100	+		24970	19907	18055	18187	24448	24448					0.024656909235545754
KIDDKPVKI	9	Unmodified	_KIDDKPVKI_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2;ENST00000527290.1_1_11:74660330-74676171:+|nuORF;ENST00000526361.1_1_11:74660330-74680708:+|nuORF	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	A375_MHC_IP_R1	1	352.95330810546875	3	352.553492	1054.63865	-0.30234	-0.00010659	-0.12853	-4.5314E-05	-0.43087	-0.0001519	352.5534212508988	24.168	0.60746	24.168	23.94	24.547	0					25	11	3	0	0	0	0.0089677	1	6799	6799		98.73	49.203	1	21874000			24971	3537	18056	18188	24449	24449					0.11351175545519254
KIDDKPVKI	9	Unmodified	_KIDDKPVKI_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2;ENST00000527290.1_1_11:74660330-74676171:+|nuORF;ENST00000526361.1_1_11:74660330-74680708:+|nuORF	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	A375_MHC_IP_R2	2	352.95330810546875	3	352.553492	1054.63865	-0.52947	-0.00018667	-0.21823	-7.6936E-05	-0.7477	-0.0002636	352.5534027272707	23.424	0.3536	24.054	23.878	24.232	0.63014					16	6	3	0	0	0	0.0091985	1	7548	7548		102.55	53.021	1	17370000			24972	3537	18056	18188	24450	24450					0.11351175545519254
KIDDPIYGTY	10	Unmodified	_KIDDPIYGTY_					0	0	0		nc|ENSG00000187391|Q86UL8-2|MAGI2;ENSG00000187391|ENST00000354212|MAGI2;MAGI2|p.E355K|2|0.33|ENSG00000187391|chr7:78369196-78369196|C/T|missense_variant;ENST00000520379.2_1_7:77814916-78119132:-|nuORF	nc|ENSG00000187391|Q86UL8-2|MAGI2	nc|ENSG00000187391|Q86UL8-2|MAGI2	MULTI-SECPEP	A375_MHC_IP_R1	1	593.1945190429688	2	592.795329	1183.5761	-0.27503	-0.00016304	0.40781	0.00024175	0.13278	7.871E-05	593.2974435849924	62.15	0.56265	62.15	61.994	62.557	0					13	10	2	0	0	0	0.79749	1	22464	22464		21.59	1.1756	1	1992200			24973	8823	18057	18189	24451	24451					-0.00834015313330383
KIDDTIRYL	9	Unmodified	_KIDDTIRYL_					0	0	0		ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-SECPEP	A375_MHC_IP_R1	1	569.218994140625	2	568.819138	1135.62372	-0.39522	-0.00022481	0.26266	0.00014941	-0.13256	-7.5405E-05	568.8191783705905	58.562	0.862	58.562	57.974	58.836	0					41	16	3	0	0	0	0.30942	1	20954	20954		57.249	15.409	1	6997400			24974	6778	18058	18190	24452	24452					0.06133683677512636
KIDDTIRYL	9	Unmodified	_KIDDTIRYL_					0	0	0		ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-SECPEP	A375_MHC_IP_R2	2	569.2188110351562	2	568.819138	1135.62372	-0.66317	-0.00037722	-0.10968	-6.2389E-05	-0.77285	-0.00043961	568.8189470673337	57.652	0.86564	58.401	57.814	58.679	0.74894					39	16	3	0	0	0	0.064556	1	21709	21709		83.429	29.596	1	7884400			24975	6778	18058	18190	24453	24453					0.06133683677512636
KIDEKNFVV	9	Unmodified	_KIDEKNFVV_					0	0	0		ENSG00000119318|ENST00000358015|RAD23B	ENSG00000119318|ENST00000358015|RAD23B	ENSG00000119318|ENST00000358015|RAD23B	MULTI-SECPEP	A375_MHC_IP_R1	1	546.7081909179688	2	546.308406	1090.60226	-0.41715	-0.00022789	-0.14592	-7.9718E-05	-0.56307	-0.00030761	546.3082902005398	42.411	0.50551	42.411	42.132	42.638	0					20	9	3	0	0	0	0.10412	1	14669	14669		75.571	75.571	1	10769000			24976	3581	18059	18191	24454	24454					0.06058298648804339
KIDEKNFVV	9	Unmodified	_KIDEKNFVV_					0	0	0		ENSG00000119318|ENST00000358015|RAD23B	ENSG00000119318|ENST00000358015|RAD23B	ENSG00000119318|ENST00000358015|RAD23B	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	546.308406	1090.60226	-0.90807	-0.00049609	0.13177	7.1987E-05	-0.7763	-0.0004241	546.308428643474	41.515	0.45673	42.29	42.047	42.504	0.77451	-0.060507	0.00015315	NaN	67.081	21	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9835000			24977	3581	18059	18191							0.06058298648804339
KIDENQLMY	9	Unmodified	_KIDENQLMY_					0	0	0		nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-MSMS	A375_MHC_IP_R1	1	577.6828002929688	2	577.281531	1152.54851	-0.20028	-0.00011562	0.97097	0.00056053	0.77069	0.00044491	577.2826618434401	52.45	0.76196	52.45	51.982	52.744	0					23	14	3	0	0	0	0.082375	1	18634	18634		53.833	17.789	1	4935800			24978	3113	18060	18192	24455	24455					-0.021662418452024212
KIDENQLMY	9	Oxidation (M)	_KIDENQLM(Oxidation (M))Y_		KIDENQLM(1)Y		KIDENQLM(68)Y	0	0	1		nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-SECPEP	A375_MHC_IP_R2	2	584.716796875	2	585.278989	1168.54342	-0.5517	-0.0003229	0.82012	0.00048	0.26842	0.0001571	585.2790091567805	40.074	0.50658	40.848	40.575	41.082	0.77451					27	9	4	0	0	0	0.11436	1	14793	14793		68.081	38.999	1	9308000			24979	3113	18060	18193	24456	24456		147			-0.034105457078339896
KIDEPSTPY	9	Unmodified	_KIDEPSTPY_					0	0	0		ENST00000462906.1_1_3:195256593-195269923:-|nuORF;ENST00000393023.2_1_13:64385317-64385740:-|nuORF;ENST00000420261.1_1_6:32846995-32847538:-|nuORF;nc|ENSG00000234515|Q96PQ5|PPP1R2P1;ENSG00000184203|ENST00000618156|PPP1R2	ENST00000462906.1_1_3:195256593-195269923:-|nuORF	ENST00000462906.1_1_3:195256593-195269923:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	525.6608276367188	2	525.261122	1048.50769	-0.50865	-0.00026718	1.0458	0.0005493	0.53711	0.00028212	525.2616057579185	34.555	1.0653	34.555	34.203	35.269	0					46	20	4	0	0	0	0.30925	1	11372	11372		41.956	11.319	1	13916000			24980	8558	18061	18194	24457	24457					-0.01462259893173723
KIDEPSTPY	9	Unmodified	_KIDEPSTPY_					0	0	0		ENST00000462906.1_1_3:195256593-195269923:-|nuORF;ENST00000393023.2_1_13:64385317-64385740:-|nuORF;ENST00000420261.1_1_6:32846995-32847538:-|nuORF;nc|ENSG00000234515|Q96PQ5|PPP1R2P1;ENSG00000184203|ENST00000618156|PPP1R2	ENST00000462906.1_1_3:195256593-195269923:-|nuORF	ENST00000462906.1_1_3:195256593-195269923:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	525.660888671875	2	525.261122	1048.50769	-0.91998	-0.00048323	1.3614	0.00071511	0.44146	0.00023188	525.2618144364142	33.942	1.674	34.694	33.992	35.666	0.75225					64	32	5	0	0	0	0.20451	1	12169	12169		49.554	20.473	1	13923000			24981	8558	18061	18194	24458	24458					-0.01462259893173723
KIDGKTIGV	9	Unmodified	_KIDGKTIGV_					0	0	0		ENSG00000003756|ENST00000347869|RBM5;RBM5|p.R574Efs*14|1|0.15|ENSG00000003756|chr3:50114049-50114050|-/G|frameshift_variant;ENST00000494360.5_1_3:50144211-50147205:+|nuORF;RBM5|p.P300S|1|0.3|ENSG00000003756|chr3:50106809-50106809|C/T|missense_variant	ENSG00000003756|ENST00000347869|RBM5	ENSG00000003756|ENST00000347869|RBM5	MULTI-SECPEP	A375_MHC_IP_R1	1	466.18414306640625	2	465.784567	929.554582	-0.28888	-0.00013455	-0.32533	-0.00015154	-0.61421	-0.00028609	465.78438337201027	28.313	0.40304	28.313	28.088	28.491	0					13	7	2	0	0	0	0.59927	1	8726	8726		14.218	7.5878	1	4860000			24982	861	18062	18195	24459	24459					0.08698644448622872
KIDGKTIGV	9	Unmodified	_KIDGKTIGV_					0	0	0		ENSG00000003756|ENST00000347869|RBM5;RBM5|p.R574Efs*14|1|0.15|ENSG00000003756|chr3:50114049-50114050|-/G|frameshift_variant;ENST00000494360.5_1_3:50144211-50147205:+|nuORF;RBM5|p.P300S|1|0.3|ENSG00000003756|chr3:50106809-50106809|C/T|missense_variant	ENSG00000003756|ENST00000347869|RBM5	ENSG00000003756|ENST00000347869|RBM5	MULTI-SECPEP	A375_MHC_IP_R2	2	466.1843566894531	2	465.784567	929.554582	-0.62223	-0.00028983	0.25569	0.0001191	-0.36654	-0.00017073	465.7845788082556	27.611	0.40415	28.29	28.098	28.502	0.67857					14	7	2	0	0	0	0.46121	1	9469	9469		20.581	3.1383	1	4057600			24983	861	18062	18195	24460	24460					0.08698644448622872
KIDGNDRSL	9	Unmodified	_KIDGNDRSL_					0	0	0			REV__ENST00000591406.1_1_18:56822908-56825914:+|nuORF	REV__ENST00000591406.1_1_18:56822908-56825914:+|nuORF	MSMS	A375_MHC_IP_R2	2	509.1518249511719	2	509.269813	1016.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.25	1	132.44	131.94	132.94	0.18953								0	0	0	0.15486	1	52023	52023		9.3831	2.0939	1		+		24984	26444	18063	18196	24461	24461					0.017470804324716482
KIDRRNYI	8	Unmodified	_KIDRRNYI_					0	0	0		tr|U7SRM3|U7SRM3_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01578PE=4SV=1;tr|U7SLF7|U7SLF7_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01916PE=4SV=1	tr|U7SRM3|U7SRM3_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01578PE=4SV=1	tr|U7SRM3|U7SRM3_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01578PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	359.597412109375	3	359.876969	1076.60908	0.085852	3.0896E-05	-0.32093	-0.00011549	-0.23507	-8.4598E-05	359.8767363452609	28.33	0.25239	28.33	28.188	28.44	0					11	4	3	0	0	0	0.972	1	8706	8706		5.7319	0.43497	1	3471800			24985	29501	18064	18197	24462	24462					0.07383656320052978
KIEAHIRQL	9	Unmodified	_KIEAHIRQL_					0	0	0			REV__ENSG00000164985|ENST00000380733|PSIP1	REV__ENSG00000164985|ENST00000380733|PSIP1	MULTI-MSMS	A375_MHC_IP_R2	2	370.2928161621094	3	369.892619	1106.65603	0.28018	0.00010364	-0.20961	-7.7535E-05	0.070569	2.6103E-05	369.89249288924674	30.891	0.55494	31.61	31.317	31.872	0.71857					26	10	3	0	0	0	0.36834	1	10871	10871		24.882	0	1	4169700	+		24986	20537	18065	18198	24463	24463					0.10696515871177326
KIEFDREKL	9	Unmodified	_KIEFDREKL_					0	0	0			REV__ENSG00000244607|ENST00000310232|CCDC13	REV__ENSG00000244607|ENST00000310232|CCDC13	MULTI-MSMS	A375_MHC_IP_R1	1	393.608154296875	3	393.224034	1176.65027	-0.17882	-7.0315E-05	0.1001	3.9361E-05	-0.078717	-3.0953E-05	393.22402754701926	25.91	0.45583	25.91	25.714	26.17	0					14	8	2	0	0	0	0.6343	1	7720	7720		12.873	0.69786	1	4381300	+		24987	22824	18066	18199	24464	24464					0.06901372568859188
KIEKNRLPNSK	11	Unmodified	_KIEKNRLPNSK_					0	0	0			REV__ENSG00000140749|ENST00000268389|IGSF6	REV__ENSG00000140749|ENST00000268389|IGSF6	MULTI-MSMS	A375_MHC_IP_R2	2	664.2948608398438	2	663.896243	1325.77793	-0.82049	-0.00054472	-0.45834	-0.00030429	-1.2788	-0.00084902	663.8957954705573	131.58	3.101	131.77	131.24	134.34	0.18953					219	60	6	0	0	0	0.73502	1	51881	51881		2.4985	0	1	530600000	+		24988	19229	18067	18200	24465	24465					0.12807513162874784
KIEKNRLPNSK	11	Unmodified	_KIEKNRLPNSK_					0	0	0			REV__ENSG00000140749|ENST00000268389|IGSF6	REV__ENSG00000140749|ENST00000268389|IGSF6	MULTI-SECPEP	A375_MHC_IP_R2	2	443.33258056640625	3	442.933254	1325.77793	-0.29377	-0.00013012	-0.77369	-0.00034269	-1.0675	-0.00047281	442.932819251176	133.01	0.76093	133.17	132.89	133.65	0.16487					32	14	3	0	0	0	1.0012	1	52319	52319		1.2148	1.2148	1	13533000	+		24989	19229	18067	18200	24466	24466					0.12807513162874784
KIEKRRHHF	9	Unmodified	_KIEKRRHHF_					0	0	0			REV__nc|ENSG00000148690|Q70Z53-2|FRA10AC1	REV__nc|ENSG00000148690|Q70Z53-2|FRA10AC1	MULTI-SECPEP	A375_MHC_IP_R1	1	417.1335144042969	3	417.579146	1249.71561	0.24606	0.00010275	2.2829	0.00095327	2.5289	0.001056	417.9146611886906	70.571	0.20398	70.571	70.494	70.698	0					6	3	2	0	0	0	0.71071	1	25670	25670		3.8763	1.1411	1	626710	+		24990	19643	18068	18201	24467	24467					0.10073831605222949
KIEKRRHHF	9	Unmodified	_KIEKRRHHF_					0	0	0			REV__nc|ENSG00000148690|Q70Z53-2|FRA10AC1	REV__nc|ENSG00000148690|Q70Z53-2|FRA10AC1	MULTI-SECPEP	A375_MHC_IP_R2	2	417.1334533691406	3	417.579146	1249.71561	0.028679	1.1976E-05	1.865	0.00077878	1.8937	0.00079076	417.5798367469961	69.908	0.30692	70.642	70.386	70.693	0.73421					7	5	2	0	0	0	0.75519	1	26435	26435		6.6304	0	1	701930	+		24991	19643	18068	18201	24468	24468					0.10073831605222949
KIELWTCIKYT	11	Unmodified	_KIELWTCIKYT_					0	0	0			REV__nc|ENSG00000184988|Q96A25-2|TMEM106A	REV__nc|ENSG00000184988|Q96A25-2|TMEM106A	MULTI-MSMS	A375_MHC_IP_R2	2	699.763916015625	2	699.378506	1396.74246	-0.66292	-0.00046363	-0.53931	-0.00037718	-1.2022	-0.00084081	699.3779279270892	132.24	0.61249	132.43	132.15	132.76	0.18953					36	11	4	0	0	0	0.73672	1	52109	52109		2.4985	0	1	8950000	+		24992	21853	18069	18202	24469	24469					0.059957145908356324
KIEPDAPPAPP	11	Unmodified	_KIEPDAPPAPP_					0	0	0			REV__ENSG00000088053|ENST00000310373|GP6	REV__ENSG00000088053|ENST00000310373|GP6	MULTI-SECPEP	A375_MHC_IP_R1	1	565.663330078125	2	566.305864	1130.59717	-0.56125	-0.00031784	0.50975	0.00028867	-0.051507	-2.9169E-05	566.3061124684107	39.567	0.76114	39.567	39.289	40.05	0					23	11	3	0	0	0	0.9836	1	13498	13498		11.495	3.5846	1	4818200	+		24993	16879	18070	18203	24470	24470					0.037099947861634064
KIEPHRKQY	9	Unmodified	_KIEPHRKQY_					0	0	0			REV__ENSG00000148143|ENST00000277225|ZNF462	REV__ENSG00000148143|ENST00000277225|ZNF462	MULTI-SECPEP	A375_MHC_IP_R2	2	399.9363098144531	3	400.22789	1197.66184	-0.41908	-0.00016773	-1.1248	-0.00045018	-1.5439	-0.00061791	400.22766880241517	24.745	0.15074	25.389	25.263	25.414	0.64368					4	2	2	0	0	0	0.77948	1	8149	8149		6.6304	0	1	2221700	+		24994	19615	18071	18204	24471	24471					0.0709161438285264
KIEQMKKKF	9	Unmodified	_KIEQMKKKF_					0	0	0		ANKRD30A|p.M989I|1|0.75|ENSG00000148513|chr10:37216278-37216278|G/A|missense_variant	ANKRD30A|p.M989I|1|0.75|ENSG00000148513|chr10:37216278-37216278|G/A|missense_variant	ANKRD30A|p.M989I|1|0.75|ENSG00000148513|chr10:37216278-37216278|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	394.3020324707031	3	393.902126	1178.68455	-0.2666	-0.00010501	0.34074	0.00013422	0.074142	2.9205E-05	393.90221675168027	30.192	0.55802	30.91	30.708	31.266	0.71857					16	10	2	0	0	0	0.65748	1	10616	10616		10.8	2.0477	1	3587800			24995	143	18072	18205	24472	24472					0.1023549745609671
KIERVGKHGK	10	Unmodified	_KIERVGKHGK_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-MSMS	A375_MHC_IP_R1	1	385.2730712890625	3	384.571768	1150.69348	0.17258	6.637E-05	-0.042309	-1.6271E-05	0.13027	5.01E-05	384.5718400442515	19.597	0.66159	19.597	19.318	19.98	0					28	12	3	0	0	0	0.71693	1	4962	4962		4.7159	1.6437	1	6672000			24996	3109	18073	18206	24473	24473					0.12415607136813378
KIESKIKLY	9	Unmodified	_KIESKIKLY_					0	0	0			REV__tr|U7SRJ7|U7SRJ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01629PE=4SV=1	REV__tr|U7SRJ7|U7SRJ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01629PE=4SV=1	MSMS	A375_MHC_IP_R1	1	561.6702880859375	2	561.350074	1120.6856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.8	1	132.8	132.3	133.3	0								0	0	0	0.15486	1	51204	51204		1.8442	0	1		+		24997	28401	18074	18207	24474	24474					0.13008035096640924
KIETEENCM	9	Unmodified	_KIETEENCM_					0	0	0			REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MULTI-SECPEP	A375_MHC_IP_R1	1	548.2213745117188	2	548.736099	1095.45765	-0.47501	-0.00026065	-3.5633	-0.0019553	-4.0383	-0.002216	549.2348245517667	96.6	0.55853	96.6	96.376	96.934	0					14	10	2	0	0	0	0.71341	1	35539	35539		13.042	0	1	2244500	+		24998	21593	18075	18208	24475	24475					-0.0862645388499459
KIETYQLF	8	Unmodified	_KIETYQLF_					0	0	0		tr|U7SPC3|U7SPC3_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01811PE=3SV=1	tr|U7SPC3|U7SPC3_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01811PE=3SV=1	tr|U7SPC3|U7SPC3_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01811PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	521.64892578125	2	521.2844	1040.55425	-0.35793	-0.00018658	0.65879	0.00034342	0.30086	0.00015683	521.2849443829335	94.912	0.71213	95.658	95.427	96.139	0.74525					15	13	2	0	0	0	0.93661	1	36120	36120		21.747	15.541	1	1943600			24999	29579	18076	18209	24476	24476					0.035592247287468126
KIFDEILVNA	10	Unmodified	_KIFDEILVNA_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B	ENSG00000131747|ENST00000423485|TOP2A;ENSG00000077097|ENST00000264331|TOP2B	ENSG00000077097|ENST00000264331|TOP2B	MULTI-SECPEP	A375_MHC_IP_R2	2	581.7291870117188	2	581.329339	1160.64412	-0.50038	-0.00029089	-0.020068	-1.1666E-05	-0.52045	-0.00030255	581.3295672315073	96.854	0.962	97.61	97.216	98.178	0.75587					30	18	3	0	0	0	0.62001	1	36767	36767		33.445	10.709	1	4315500			25000	4347;1646	18077	18210	24477	24477					0.07022854337333229
KIFDTKKKH	9	Unmodified	_KIFDTKKKH_					0	0	0			REV__ENST00000397885.2_1_9:2837287-2844066:-|nuORF	REV__ENST00000397885.2_1_9:2837287-2844066:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	382.2803039550781	3	382.232752	1143.67643	-0.48438	-0.00018515	-0.23824	-9.1063E-05	-0.72262	-0.00027621	382.232547183835	24.796	0.71291	25.439	25.263	25.976	0.64368					20	13	2	0	0	0	0.66474	1	8357	8357		10.151	3.9587	1	8844600	+		25001	24366	18078	18211	24478	24478					0.11033686530981868
KIFEDIPTL	9	Unmodified	_KIFEDIPTL_					0	0	0		nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;chr1:159006041-159010003|341|22.76|0.64|5.15|+|ENST00000426592|IFI16,IFI16	nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-MSMS	A375_MHC_IP_R1	1	538.7044677734375	2	538.305332	1074.59611	-0.68615	-0.00036936	-0.10263	-5.5247E-05	-0.78878	-0.0004246	538.3052330211959	99.499	1.3653	99.499	99.168	100.53	0					37	26	2	0	0	0	0.024574	1	36556	36556		79.596	11.516	1	6498800			25002	6685	18079	18212	24479	24479					0.0617978041727838
KIFEMGPVFTL	11	Oxidation (M)	_KIFEM(Oxidation (M))GPVFTL_		KIFEM(1)GPVFTL		KIFEM(110)GPVFTL	0	0	1		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	A375_MHC_IP_R1	1	649.7637329101562	2	649.346674	1296.6788	-0.13668	-8.8754E-05	-0.45331	-0.00029436	-0.58999	-0.00038311	649.3464304274569	106.81	0.91859	106.81	106.47	107.39	0					43	17	4	0	0	0	0.0003796	1	39215	39215		112.04	72.091	1	17577000			25003	9304	18080	18213	24480	24480		426			0.04232354153759843
KIFEMGPVFTL	11	Oxidation (M)	_KIFEM(Oxidation (M))GPVFTL_		KIFEM(1)GPVFTL		KIFEM(77)GPVFTL	0	0	1		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	A375_MHC_IP_R1	1	649.7471923828125	2	649.346674	1296.6788	-0.1987	-0.00012902	0.012286	7.9777E-06	-0.18641	-0.00012105	649.3466804996317	110.71	1.3796	110.71	110.14	111.52	0					48	26	3	0	0	0	0.062056	3	40549	40549;40798;40837		77.049	37.099	1	2542000			25004	9304	18080	18213	24481;24482;24483	24481		426			0.04232354153759843
KIFEMGPVFTL	11	Oxidation (M)	_KIFEM(Oxidation (M))GPVFTL_		KIFEM(1)GPVFTL		KIFEM(110)GPVFTL	0	0	1		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	A375_MHC_IP_R2	2	649.7469482421875	2	649.346674	1296.6788	-0.71958	-0.00046726	-0.35211	-0.00022864	-1.0717	-0.0006959	649.3465379021276	105.92	0.96923	106.68	106.32	107.29	0.75977					47	18	4	0	0	0	0.00090302	1	40010	40010		105.35	65.395	1	14592000			25005	9304	18080	18213	24484	24484		426			0.04232354153759843
KIFEMGPVFTL	11	Oxidation (M)	_KIFEM(Oxidation (M))GPVFTL_		KIFEM(1)GPVFTL		KIFEM(57)GPVFTL	0	0	1		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	A375_MHC_IP_R2	2	649.7462158203125	2	649.346674	1296.6788	-0.53219	-0.00034557	-0.13563	-8.8074E-05	-0.66782	-0.00043365	649.3464290341681	111.1	2.8594	111.84	110.27	113.13	0.73692					71	55	2	0	0	0	0.1757	1	41813	41813		57.108	24.322	1	2825800			25006	9304	18080	18213	24485	24485		426			0.04232354153759843
KIFEMGPVFTL	11	Unmodified	_KIFEMGPVFTL_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-SECPEP	A375_MHC_IP_R1	1	641.7490234375	2	641.349217	1280.68388	-0.40635	-0.00026061	0.53301	0.00034185	0.12666	8.1232E-05	641.3492790162063	126.01	0.45184	126.01	125.85	126.3	0					16	8	3	0	0	0	0.032566	1	48073	48073		111.31	67.451	1	36192000			25007	9304	18080	18214	24486	24486					0.054766580163914114
KIFEMGPVFTL	11	Unmodified	_KIFEMGPVFTL_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	A375_MHC_IP_R2	2	641.7481079101562	2	641.349217	1280.68388	-0.6899	-0.00044247	-0.88997	-0.00057078	-1.5799	-0.0010132	641.3487882177234	125.55	0.50305	125.85	125.62	126.12	0.2951					18	9	4	0	0	0	0.0012117	1	49025	49025		101.54	53.795	1	42718000			25008	9304	18080	18214	24487	24487					0.054766580163914114
KIFEMLEGV	9	Unmodified	_KIFEMLEGV_					0	0	0		ENSG00000278289|ENST00000620654|CT45A6;ENSG00000273696|ENST00000610598|CT45A7;ENSG00000269096|ENST00000598716|CT45A3;ENSG00000268940|ENST00000594565|CT45A1;ENSG00000228836|ENST00000698999|CT45A5;ENSG00000278085|ENST00000611660|CT45A8;ENSG00000271449|ENST00000612907|CT45A2;ENSG00000270946|ENST00000620704|CT45A9;ENSG00000269586|ENST00000682849|CT45A10	ENSG00000278289|ENST00000620654|CT45A6	ENSG00000278289|ENST00000620654|CT45A6	MULTI-MSMS	A375_MHC_IP_R1	1	533.685791015625	2	533.286085	1064.55762	-0.64268	-0.00034273	-0.24713	-0.00013179	-0.88981	-0.00047453	533.2859395672042	100.05	0.65536	100.05	99.624	100.28	0					28	12	3	0	0	0	0.0090297	1	36741	36741		99.755	35.519	1	6236600			25009	9712	18081	18215	24488	24488					0.02792151511107477
KIFEMLEGV	9	Unmodified	_KIFEMLEGV_					0	0	0		ENSG00000278289|ENST00000620654|CT45A6;ENSG00000273696|ENST00000610598|CT45A7;ENSG00000269096|ENST00000598716|CT45A3;ENSG00000268940|ENST00000594565|CT45A1;ENSG00000228836|ENST00000698999|CT45A5;ENSG00000278085|ENST00000611660|CT45A8;ENSG00000271449|ENST00000612907|CT45A2;ENSG00000270946|ENST00000620704|CT45A9;ENSG00000269586|ENST00000682849|CT45A10	ENSG00000278289|ENST00000620654|CT45A6	ENSG00000278289|ENST00000620654|CT45A6	MULTI-SECPEP	A375_MHC_IP_R2	2	533.6856689453125	2	533.286085	1064.55762	-0.59318	-0.00031633	-0.20789	-0.00011087	-0.80107	-0.0004272	533.2858990506091	99.084	0.91458	99.844	99.251	100.17	0.75977					35	17	3	0	0	0	0.20451	1	37552	37552		49.554	20.473	1	4894200			25010	9712	18081	18215	24489	24489					0.02792151511107477
KIFEMLEGV	9	Oxidation (M)	_KIFEM(Oxidation (M))LEGV_		KIFEM(1)LEGV		KIFEM(66)LEGV	0	0	1		ENSG00000278289|ENST00000620654|CT45A6;ENSG00000273696|ENST00000610598|CT45A7;ENSG00000269096|ENST00000598716|CT45A3;ENSG00000268940|ENST00000594565|CT45A1;ENSG00000228836|ENST00000698999|CT45A5;ENSG00000278085|ENST00000611660|CT45A8;ENSG00000271449|ENST00000612907|CT45A2;ENSG00000270946|ENST00000620704|CT45A9;ENSG00000269586|ENST00000682849|CT45A10	ENSG00000278289|ENST00000620654|CT45A6	ENSG00000278289|ENST00000620654|CT45A6	MULTI-SECPEP	A375_MHC_IP_R1	1	541.6824340820312	2	541.283543	1080.55253	-0.57967	-0.00031377	-0.7294	-0.00039481	-1.3091	-0.00070858	541.2830173671329	73.091	1.0647	73.091	72.372	73.437	0					31	20	3	0	0	0	0.13208	1	26606	26606		66.457	20.436	1	2995200			25011	9712	18081	18216	24490	24490		441			0.015478476484986459
KIFEMLEGV	9	Oxidation (M)	_KIFEM(Oxidation (M))LEGV_		KIFEM(1)LEGV		KIFEM(50)LEGV	0	0	1		ENSG00000278289|ENST00000620654|CT45A6;ENSG00000273696|ENST00000610598|CT45A7;ENSG00000269096|ENST00000598716|CT45A3;ENSG00000268940|ENST00000594565|CT45A1;ENSG00000228836|ENST00000698999|CT45A5;ENSG00000278085|ENST00000611660|CT45A8;ENSG00000271449|ENST00000612907|CT45A2;ENSG00000270946|ENST00000620704|CT45A9;ENSG00000269586|ENST00000682849|CT45A10	ENSG00000278289|ENST00000620654|CT45A6	ENSG00000278289|ENST00000620654|CT45A6	MULTI-SECPEP	A375_MHC_IP_R2	2	541.6834106445312	2	541.283543	1080.55253	-0.80738	-0.00043702	-0.24068	-0.00013027	-1.0481	-0.00056729	541.2833236072574	73.166	0.86598	73.902	73.53	74.396	0.7354					26	16	3	0	0	0	0.30925	1	27782	27782		49.554	11.58	1	2811800			25012	9712	18081	18216	24491	24491		441			0.015478476484986459
KIFGFPTGL	9	Unmodified	_KIFGFPTGL_					0	0	0		ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	MULTI-SECPEP	A375_MHC_IP_R1	1	490.6842956542969	2	490.284203	978.553853	-0.07967	-3.9061E-05	0.16717	8.1959E-05	0.087497	4.2898E-05	490.28422490523513	107.06	0.51069	107.06	106.78	107.29	0					15	9	2	0	0	0	0.20645	1	39311	39311		47.749	47.749	1	1486300			25013	1616	18082	18217	24492	24492					0.06371849799552365
KIFGFPTGL	9	Unmodified	_KIFGFPTGL_					0	0	0		ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	MULTI-MATCH	A375_MHC_IP_R2	2		2	490.284203	978.553853	-0.56443	-0.00027673	-0.43671	-0.00021411	-1.0011	-0.00049085	490.28396706902714	106.08	0.45778	106.84	106.58	107.04	0.75977	-0.10942	-0.00022092	NaN	47.749	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1087300			25014	1616	18082	18217							0.06371849799552365
KIFHDDGVFW	10	Unmodified	_KIFHDDGVFW_					0	0	0		ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	MULTI-MSMS	A375_MHC_IP_R1	1	422.2769775390625	3	421.876746	1262.60841	-0.19871	-8.3831E-05	0.21435	9.0429E-05	0.015638	6.5974E-06	421.87672759746386	85.478	0.5071	85.478	85.261	85.768	0					18	9	3	0	0	0	0.59108	1	31367	31367		18.721	2.9826	1	1907700			25015	1347	18083	18218	24493	24493					-0.012391831196964631
KIFHDDGVFW	10	Unmodified	_KIFHDDGVFW_					0	0	0		ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	MULTI-MATCH	A375_MHC_IP_R2	2		3	421.876746	1262.60841	-0.013885	-5.8578E-06	-0.092579	-3.9057E-05	-0.10646	-4.4915E-05	421.8766839375346	84.605	0.45384	85.341	85.018	85.472	0.73602	-0.068613	-0.00016609	NaN	18.721	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1405200			25016	1347	18083	18218							-0.012391831196964631
KIFHINPRL	9	Unmodified	_KIFHINPRL_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A;POLR2A|p.P1001S|2|0.27|ENSG00000181222|chr17:7503457-7503457|C/T|missense_variant	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	A375_MHC_IP_R2	2	380.2572326660156	3	379.901226	1136.68185	0.13792	5.2394E-05	-0.31708	-0.00012046	-0.17917	-6.8066E-05	379.90102958109156	44.197	0.45622	44.966	44.732	45.188	0.76909					15	8	2	0	0	0	0.3489	2	16499	16499;16537		27.223	17.073	1	3189700			25017	8339	18084	18219	24494;24495	24494					0.11897410113465412
KIFIFILIAIG	11	Unmodified	_KIFIFILIAIG_					0	0	0		tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1	tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1	tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	624.809326171875	2	624.409935	1246.80532	-0.87483	-0.00054625	-0.038573	-2.4085E-05	-0.91341	-0.00057034	624.4098610206324	142.21	0.20224	142.21	142.13	142.34	0					7	3	3	0	0	0	0.72949	1	54590	54590		9.3831	9.3831	1	7889500			25018	29542	18085	18220	24496	24496					0.1917864844124324
KIFIFILIAIG	11	Unmodified	_KIFIFILIAIG_					0	0	0		tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1	tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1	tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	624.8095092773438	2	624.409935	1246.80532	-0.58294	-0.00036399	-0.078757	-4.9176E-05	-0.66169	-0.00041317	624.4098972867673	142.22	0.20453	142.25	142.18	142.38	0.030731					5	3	2	0	0	0	0.72949	1	55626	55626		9.3831	7.7305	1	3222400			25019	29542	18085	18220	24497	24497					0.1917864844124324
KIFIFILIAIG	11	Unmodified	_KIFIFILIAIG_					0	0	0		tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1	tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1	tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	624.409935	1246.80532	-0.58294	-0.00036399	-0.078757	-4.9176E-05	-0.66169	-0.00041317	624.4098972867673	142.22	0.20453	142.25	142.18	142.38	0.030731	0.021005	-2.4849E-05	NaN	9.3831	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3222400			25020	29542	18085	18220							0.1917864844124324
KIFPEKNIRGF	11	Unmodified	_KIFPEKNIRGF_					0	0	0		nc|ENSG00000106991|P17813-2|ENG;ENSG00000106991|ENST00000373203|ENG	nc|ENSG00000106991|P17813-2|ENG	nc|ENSG00000106991|P17813-2|ENG	MULTI-MSMS	A375_MHC_IP_R1	1	450.66253662109375	3	450.262712	1347.76631	0.0014527	6.541E-07	-0.32136	-0.0001447	-0.31991	-0.00014404	450.2626802686758	43.334	0.55994	43.334	43.095	43.655	0					19	10	3	0	0	0	0.42581	1	15091	15091		36.955	25.324	1	2726700			25021	2719	18086	18221	24498	24498					0.1063331613952414
KIFPEKNIRGF	11	Unmodified	_KIFPEKNIRGF_					0	0	0		nc|ENSG00000106991|P17813-2|ENG;ENSG00000106991|ENST00000373203|ENG	nc|ENSG00000106991|P17813-2|ENG	nc|ENSG00000106991|P17813-2|ENG	MULTI-SECPEP	A375_MHC_IP_R2	2	450.1713562011719	3	450.262712	1347.76631	-0.23063	-0.00010384	-0.54814	-0.00024681	-0.77877	-0.00035065	450.2626166440084	42.376	0.40868	43.148	42.91	43.319	0.7724					15	7	3	0	0	0	0.33997	1	15786	15786		47.053	39.624	1	2228500			25022	2719	18086	18221	24499	24499					0.1063331613952414
KIFRDEGGKAF	11	Unmodified	_KIFRDEGGKAF_					0	0	0		ENSG00000169100|ENST00000381401|SLC25A6	ENSG00000169100|ENST00000381401|SLC25A6	ENSG00000169100|ENST00000381401|SLC25A6	MULTI-SECPEP	A375_MHC_IP_R1	1	422.93890380859375	3	423.2313	1266.67207	-0.0069715	-2.9505E-06	-0.70815	-0.00029971	-0.71513	-0.00030266	423.2308587868786	28.719	0.20347	28.719	28.592	28.795	0					5	3	2	0	0	0	0.99482	1	8893	8893		6.2344	1.5184	1	1217800			25023	7381	18087	18222	24500	24500					0.04940177317416783
KIFSGVFVKV	10	Unmodified	_KIFSGVFVKV_					0	0	0		ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1;nc|ENSG00000146223|Q6DKI1-2|RPL7L1;ENST00000462348.1_1_6:42848614-42854030:+|nuORF;ENST00000530523.1_1_8:42580956-42581139:-|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	562.7470703125	2	562.347335	1122.68012	-0.47095	-0.00026484	-0.34136	-0.00019196	-0.8123	-0.0004568	562.3471437137088	75.738	0.50307	75.738	75.514	76.017	0					15	9	2	0	0	0	0.47871	1	27604	27604		37.771	19.625	1	3463200			25024	5610	18088	18223	24501	24501					0.12368356304864392
KIFSGVFVKV	10	Unmodified	_KIFSGVFVKV_					0	0	0		ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1;nc|ENSG00000146223|Q6DKI1-2|RPL7L1;ENST00000462348.1_1_6:42848614-42854030:+|nuORF;ENST00000530523.1_1_8:42580956-42581139:-|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	562.7469482421875	2	562.347335	1122.68012	-0.62069	-0.00034904	0.42068	0.00023657	-0.20001	-0.00011248	562.3475597122881	74.653	0.40694	75.39	75.163	75.57	0.73752					16	7	3	0	0	0	0.24526	1	28348	28348		67.081	42.09	1	3342800			25025	5610	18088	18223	24502	24502					0.12368356304864392
KIFVREENV	9	Unmodified	_KIFVREENV_					0	0	0		nc|ENSG00000182013|Q86V59-2|PNMA8A;ENSG00000182013|ENST00000313683|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	MULTI-SECPEP	A375_MHC_IP_R1	1	567.7185668945312	2	567.319306	1132.62406	-0.65949	-0.00037414	0.23784	0.00013493	-0.42165	-0.00023921	567.3193699243104	30.656	0.50602	30.656	30.453	30.959	0					22	9	3	0	0	0	0.11849	1	9763	9763		61.602	25.096	1	4082000			25026	8372	18089	18224	24503	24503					0.06305103397380662
KIFVREENV	9	Unmodified	_KIFVREENV_					0	0	0		nc|ENSG00000182013|Q86V59-2|PNMA8A;ENSG00000182013|ENST00000313683|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	MULTI-SECPEP	A375_MHC_IP_R2	2	567.7189331054688	2	567.319306	1132.62406	-0.71667	-0.00040658	0.2952	0.00016747	-0.42148	-0.00023911	567.3193999798226	29.864	0.55765	30.563	30.385	30.942	0.69872					18	10	2	0	0	0	0.025037	1	10474	10474		90.135	38.505	1	4804000			25027	8372	18089	18224	24504	24504					0.06305103397380662
KIGDEPPKV	9	Unmodified	_KIGDEPPKV_					0	0	0		nc|ENSG00000178053|P58340-5|MLF1;nc|ENSG00000178053|P58340-4|MLF1;nc|ENSG00000178053|P58340|MLF1;ENSG00000178053|ENST00000466246|MLF1;nc|ENSG00000178053|P58340-3|MLF1	nc|ENSG00000178053|P58340-5|MLF1	nc|ENSG00000178053|P58340-5|MLF1	MULTI-SECPEP	A375_MHC_IP_R1	1	492.1818542480469	2	491.782025	981.549496	-0.32563	-0.00016014	-0.76006	-0.00037378	-1.0857	-0.00053392	491.7818336389788	25.064	1.0154	25.064	24.801	25.816	0					52	19	3	0	0	0	0.059142	1	7206	7206		62.869	36.6	1	18347000			25028	8128	18090	18225	24505	24505					0.05798340585988626
KIGDEPPKV	9	Unmodified	_KIGDEPPKV_					0	0	0		nc|ENSG00000178053|P58340-5|MLF1;nc|ENSG00000178053|P58340-4|MLF1;nc|ENSG00000178053|P58340|MLF1;ENSG00000178053|ENST00000466246|MLF1;nc|ENSG00000178053|P58340-3|MLF1	nc|ENSG00000178053|P58340-5|MLF1	nc|ENSG00000178053|P58340-5|MLF1	MULTI-SECPEP	A375_MHC_IP_R2	2	492.181640625	2	491.782025	981.549496	-0.87816	-0.00043186	-0.37212	-0.000183	-1.2503	-0.00061487	491.7819612517586	24.658	1.1691	25.302	24.755	25.924	0.64368					50	22	3	0	0	0	0.035151	1	7993	7993		84.522	38.823	1	15140000			25029	8128	18090	18225	24506	24506					0.05798340585988626
KIGEGTYGV	9	Unmodified	_KIGEGTYGV_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;ENSG00000250506|ENST00000448471|CDK3;ENST00000475504.6_1_10:62539923-62545554:+|nuORF;ENST00000567351.5_2_17:73997368-73998786:+|nuORF;ENSG00000123374|ENST00000266970|CDK2;nc|ENSG00000123374|P24941-2|CDK2	ENSG00000170312|ENST00000395284|CDK1;ENSG00000123374|ENST00000266970|CDK2	ENSG00000170312|ENST00000395284|CDK1	MULTI-SECPEP	A375_MHC_IP_R1	1	462.65264892578125	2	462.245275	922.475997	-0.48419	-0.00022381	0.39096	0.00018072	-0.093227	-4.3094E-05	462.2453915956061	36.5	0.6092	36.5	36.236	36.845	0					30	11	4	0	0	0	0.27742	1	12229	12229		51.63	3.284	1	26466000			25030	7492;3843	18091	18226	24507	24507					0.011657921435244134
KIGEGTYGV	9	Unmodified	_KIGEGTYGV_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;ENSG00000250506|ENST00000448471|CDK3;ENST00000475504.6_1_10:62539923-62545554:+|nuORF;ENST00000567351.5_2_17:73997368-73998786:+|nuORF;ENSG00000123374|ENST00000266970|CDK2;nc|ENSG00000123374|P24941-2|CDK2	ENSG00000170312|ENST00000395284|CDK1;ENSG00000123374|ENST00000266970|CDK2	ENSG00000170312|ENST00000395284|CDK1	MULTI-SECPEP	A375_MHC_IP_R2	2	462.6451721191406	2	462.245275	922.475997	-0.69774	-0.00032252	0.49424	0.00022846	-0.2035	-9.4067E-05	462.2454572341561	35.729	0.60873	36.492	36.183	36.792	0.76338					33	11	4	0	0	0	0.16764	1	12934	12934		51.63	7.7715	1	28819000			25031	7492;3843	18091	18226	24508	24508					0.011657921435244134
KIGEKKIYKS	10	Unmodified	_KIGEKKIYKS_					0	0	0		tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	398.98004150390625	3	398.579929	1192.71796	0.35807	0.00014272	-0.2583	-0.00010295	0.099765	3.9764E-05	398.5797971784966	44.955	1.518	44.955	44.626	46.144	0					65	29	4	0	0	0	0.38709	1	15662	15662		30.431	10.445	1	77406000			25032	29678	18092	18227	24509	24509					0.12930822499652095
KIGEKKIYKS	10	Unmodified	_KIGEKKIYKS_					0	0	0		tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	597.7662353515625	2	597.366256	1192.71796	0.15346	9.167E-05	-0.333	-0.00019892	-0.17955	-0.00010725	597.3659517632045	44.994	0.6076	44.994	44.676	45.284	0					31	11	4	0	0	0	0.43567	1	15680	15680		32.037	0	1	12939000			25033	29678	18092	18227	24510	24510					0.12930822499652095
KIGEKKIYKS	10	Unmodified	_KIGEKKIYKS_					0	0	0		tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	398.97979736328125	3	398.579929	1192.71796	0.11781	4.6955E-05	-0.15876	-6.3278E-05	-0.040951	-1.6322E-05	398.5798475081853	43.734	1.3658	44.503	44.177	45.543	0.76909					68	26	4	0	0	0	0.38709	1	16247	16247		24.957	9.4186	1	63092000			25034	29678	18092	18227	24511	24511					0.12930822499652095
KIGEKKIYKS	10	Unmodified	_KIGEKKIYKS_					0	0	0		tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	597.7658081054688	2	597.366256	1192.71796	-0.36348	-0.00021713	-0.019199	-1.1469E-05	-0.38268	-0.0002286	597.3661852720653	43.719	0.70599	44.488	44.228	44.934	0.7691					29	13	3	0	0	0	0.73795	1	16289	16289		26.021	3.3626	1	8773900			25035	29678	18092	18227	24512	24512					0.12930822499652095
KIGGKLAW	8	Unmodified	_KIGGKLAW_					0	0	0		ENST00000523364.1_1_7:27160577-27160676:+|nuORF	ENST00000523364.1_1_7:27160577-27160676:+|nuORF	ENST00000523364.1_1_7:27160577-27160676:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	436.9315185546875	2	436.771263	871.527973	-0.34674	-0.00015145	0.060912	2.6605E-05	-0.28583	-0.00012484	436.77146021293663	32.686	0.35465	33.423	33.265	33.62	0.73691					10	6	2	0	0	0	0.94479	1	11661	11661		19.439	9.2556	1	1338500			25036	13041	18093	18228	24513	24513					0.08707000347919802
KIGLKLKRD	9	Unmodified	_KIGLKLKRD_					0	0	0			REV__tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	REV__tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	358.27313232421875	3	357.572998	1069.69716	-0.24495	-8.7589E-05	0.071872	2.57E-05	-0.17308	-6.1889E-05	357.57291783305465	23.661	0.25454	23.661	23.483	23.737	0					7	4	2	0	0	0	0.67483	1	6549	6549		6.6304	0	1	3111400	+		25037	28799	18094	18229	24514	24514					0.16510276910639732
KIGPALKTV	9	Unmodified	_KIGPALKTV_					0	0	0		ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1	ENSG00000157106|ENST00000446231|SMG1	ENSG00000157106|ENST00000446231|SMG1	MULTI-MSMS	A375_MHC_IP_R1	1	464.2051086425781	2	463.805303	925.596052	-0.58948	-0.0002734	0.063309	2.9363E-05	-0.52617	-0.00024404	463.8053210651009	29.924	0.29628	29.924	29.703	29.999	0					9	5	2	0	0	0	0.0066517	1	9447	9447		165.72	28.296	1	11474000			25038	6228	18095	18230	24515	24515					0.1302782520793926
KIGPALKTV	9	Unmodified	_KIGPALKTV_					0	0	0		ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1	ENSG00000157106|ENST00000446231|SMG1	ENSG00000157106|ENST00000446231|SMG1	MULTI-MSMS	A375_MHC_IP_R2	2	464.20489501953125	2	463.805303	925.596052	-1.3986	-0.00064866	0.4478	0.00020769	-0.95077	-0.00044097	463.8054489712832	29.037	0.34612	29.736	29.584	29.93	0.69872					9	6	2	0	0	0	0.0015806	1	10110	10110		148.27	26.734	1	7787200			25039	6228	18095	18230	24516	24516					0.1302782520793926
KIGPPTFICL	10	Unmodified	_KIGPPTFICL_					0	0	0			REV__ENSG00000112541|ENST00000539869|PDE10A	REV__ENSG00000112541|ENST00000539869|PDE10A	MSMS	A375_MHC_IP_R2	2	363.63092041015625	3	363.543939	1087.60999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.745	1	49.502	49.002	50.002	0.75737								0	0	0	0.15382	1	18306	18306		8.4443	1.3426	1		+		25040	17736	18096	18231	24517	24517					0.06968734644692631
KIGSIIFQV	9	Unmodified	_KIGSIIFQV_					0	0	0		PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant	PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	503.2103576660156	2	502.810585	1003.60662	-0.42355	-0.00021297	-0.086878	-4.3683E-05	-0.51043	-0.00025665	502.8105147151347	95.737	0.96086	95.737	95.364	96.325	0					36	18	3	0	0	0	0.056023	1	35154	35154		75.761	17.082	1	15457000			25041	15111	18097	18232	24518	24518					0.10495807862389483
KIHHGVKPYK	10	Unmodified	_KIHHGVKPYK_					0	0	0		ENSG00000176222|ENST00000587539|ZNF404	ENSG00000176222|ENST00000587539|ZNF404	ENSG00000176222|ENST00000587539|ZNF404	MSMS	A375_MHC_IP_R1	1	402.9338073730469	3	402.90838	1205.70331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.773	1	21.773	21.273	22.273	0								0	0	0	0.15425	1	5769	5769		7.0371	1.9896	1				25042	8009	18098	18233	24519	24519					0.10868795142164345
KIHIKEKRY	9	Unmodified	_KIHIKEKRY_					0	0	0		ENSG00000178187|ENST00000519564|ZNF454	ENSG00000178187|ENST00000519564|ZNF454	ENSG00000178187|ENST00000519564|ZNF454	MULTI-MSMS	A375_MHC_IP_R1	1	405.6146545410156	3	405.583785	1213.72953	-0.15443	-6.2635E-05	0.6465	0.00026221	0.49207	0.00019958	405.918466857044	43.12	0.35799	43.12	42.942	43.3	0					12	6	2	0	0	0	0.69884	1	15037	15037		7.1017	1.3183	1	1136000			25043	8141	18099	18234	24520	24520					0.13121064313645547
KIHLLNTKLE	10	Unmodified	_KIHLLNTKLE_					0	0	0		nc|ENSG00000077935|Q8NDV3-2|SMC1B;ENSG00000077935|ENST00000357450|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	MSMS	A375_MHC_IP_R1	1	604.7708740234375	2	604.871705	1207.72886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.26	1	142.26	141.76	142.76	0								0	0	0	0.15549	1	54589	54589		2.9952	0.26005	1				25044	1663	18100	18235	24521	24521					0.13330224873948282
KIHLLNTKLE	10	Unmodified	_KIHLLNTKLE_					0	0	0		nc|ENSG00000077935|Q8NDV3-2|SMC1B;ENSG00000077935|ENST00000357450|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	MSMS	A375_MHC_IP_R2	2	604.77099609375	2	604.871705	1207.72886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.29	1	142.32	141.82	142.82	0.030731								0	0	0	0.15549	1	55628	55628		2.9952	0.26005	1				25045	1663	18100	18235	24522	24522					0.13330224873948282
KIHQRNSLI	9	Unmodified	_KIHQRNSLI_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	A375_MHC_IP_R1	1	370.2727966308594	3	370.224368	1107.65128	-0.16203	-5.9989E-05	-0.037722	-1.3966E-05	-0.19976	-7.3955E-05	370.2243688859662	29.277	0.20457	29.277	29.098	29.302	0					6	3	2	0	0	0	0.67152	2	9062	9062;9081		9.544	3.3521	1	2613100	+		25046	18428	18101	18236	24523;24524	24523					0.10175631728407097
KIHQSVVETF	10	Unmodified	_KIHQSVVETF_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ENST00000407916.2_1_7:55005616-55005874:+|nuORF;nc|ENSG00000100852|Q13017-3|ARHGAP5;nc|ENSG00000100852|Q13017-4|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-SECPEP	A375_MHC_IP_R1	1	594.171875	2	594.324588	1186.63462	-0.42369	-0.00025181	0.60898	0.00036193	0.18529	0.00011012	594.324816518782	34.562	0.45623	34.562	34.303	34.759	0					15	8	2	0	0	0	0.92832	1	11435	11435		13.906	4.5229	1	2048000			25047	2226	18102	18237	24525	24525					0.04877086051783408
KIIAPPERKY	10	Unmodified	_KIIAPPERKY_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ACTB|p.S338F|1|0.09|ENSG00000075624|chr7:5527863-5527863|G/A|missense_variant;ACTG2|p.I328S|1|0.18|ENSG00000163017|chr2:73916761-73916761|T/G|missense_variant;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2	ENSG00000075624|ENST00000646664|ACTB;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	A375_MHC_IP_R2	2	405.98004150390625	3	405.580041	1213.71829	-0.32405	-0.00013143	0.062685	2.5424E-05	-0.26137	-0.00010601	405.58005179803274	21.665	0.4594	22.284	21.979	22.439	0.61932					13	8	2	0	0	0	0.53147	1	6865	6865		25.997	11.04	1	1099500			25048	1615;5418	18103	18238	24526	24526					0.11998242219510757
KIIDEDGLLNL	11	Unmodified	_KIIDEDGLLNL_					0	0	0		ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1	ENSG00000035928|ENST00000349703|RFC1	ENSG00000035928|ENST00000349703|RFC1	MULTI-SECPEP	A375_MHC_IP_R1	1	622.2509155273438	2	621.850635	1241.68672	-0.41428	-0.00025762	0.43498	0.00027049	0.020692	1.2867E-05	621.8511765645737	103.14	0.81541	103.14	102.76	103.57	0					25	15	3	0	0	0	0.18098	1	37889	37889		66.683	32.461	1	3617300			25049	1134	18104	18239	24527	24527					0.07554204674920584
KIIDEDGLLNL	11	Unmodified	_KIIDEDGLLNL_					0	0	0		ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1	ENSG00000035928|ENST00000349703|RFC1	ENSG00000035928|ENST00000349703|RFC1	MULTI-MSMS	A375_MHC_IP_R2	2	621.4249877929688	2	621.850635	1241.68672	-0.7203	-0.00044792	0.040082	2.4925E-05	-0.68022	-0.00042299	621.8507423014496	102.32	0.60924	103.08	102.67	103.28	0.76428					20	11	2	0	0	0	0.35749	1	38718	38718		42.312	2.3628	1	2567400			25050	1134	18104	18239	24528	24528					0.07554204674920584
KIIDEDGLLNL	11	Unmodified	_KIIDEDGLLNL_					0	0	0		ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1	ENSG00000035928|ENST00000349703|RFC1	ENSG00000035928|ENST00000349703|RFC1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	621.850635	1241.68672	-0.7203	-0.00044792	0.040082	2.4925E-05	-0.68022	-0.00042299	621.8507423014496	102.32	0.60924	103.08	102.67	103.28	0.76428	-0.026814	-0.00026299	NaN	83.278	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2567400			25051	1134	18104	18239							0.07554204674920584
KIIDFGDSP	9	Unmodified	_KIIDFGDSP_					0	0	0		ENSG00000180537|ENST00000488300|RNF182	ENSG00000180537|ENST00000488300|RNF182	ENSG00000180537|ENST00000488300|RNF182	MULTI-MSMS	A375_MHC_IP_R2	2	496.7001647949219	2	496.258382	990.502212	-0.34523	-0.00017132	0.83086	0.00041232	0.48563	0.000241	496.25801596724267	47.761	0.8097	48.522	48.123	48.933	0.76127					38	15	3	0	0	0	0.6656	1	17872	17872		10.074	10.074	1	5715800			25052	8304	18105	18240	24529	24529					0.00658061315004943
KIIDFIYTA	9	Unmodified	_KIIDFIYTA_					0	0	0		ENSG00000198642|ENST00000359039|KLHL9;KLHL9|p.M432*|1|0.89|ENSG00000198642|chr9:21333566-21333566|T/-|frameshift_variant;nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13	ENSG00000198642|ENST00000359039|KLHL9	ENSG00000198642|ENST00000359039|KLHL9	MULTI-MSMS	A375_MHC_IP_R1	1	542.7076416015625	2	542.307875	1082.6012	-0.57774	-0.00031331	0.11472	6.2213E-05	-0.46302	-0.0002511	542.307757633926	98.636	1.0193	98.636	98.352	99.371	0					77	19	6	0	0	0	0.042871	1	36205	36205		82.529	21.172	1	44629000			25053	9293	18106	18241	24530	24530					0.06320084279923321
KIIDFIYTA	9	Unmodified	_KIIDFIYTA_					0	0	0		ENSG00000198642|ENST00000359039|KLHL9;KLHL9|p.M432*|1|0.89|ENSG00000198642|chr9:21333566-21333566|T/-|frameshift_variant;nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13	ENSG00000198642|ENST00000359039|KLHL9	ENSG00000198642|ENST00000359039|KLHL9	MULTI-SECPEP	A375_MHC_IP_R2	2	542.7070922851562	2	542.307875	1082.6012	-0.9183	-0.000498	0.35397	0.00019196	-0.56432	-0.00030604	542.307920795698	97.754	0.96585	98.51	98.128	99.094	0.75587					66	18	4	0	0	0	0.063333	1	37045	37045		92.653	59.868	1	48494000			25054	9293	18106	18241	24531	24531					0.06320084279923321
KIIDIQEKV	9	Unmodified	_KIIDIQEKV_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	A375_MHC_IP_R1	1	544.2330932617188	2	543.331882	1084.64921	-0.60034	-0.00032618	0.20419	0.00011094	-0.39615	-0.00021524	543.3319563963827	43.933	0.76486	43.933	43.706	44.471	0					35	14	4	0	0	0	0.0043988	1	15280	15280		187.14	69.074	1	42864000			25055	1199	18107	18242	24532	24532					0.11027158199931364
KIIDIQEKV	9	Unmodified	_KIIDIQEKV_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	A375_MHC_IP_R1	1	362.9569091796875	3	362.557013	1084.64921	0.15406	5.5854E-05	-0.23348	-8.4648E-05	-0.07942	-2.8794E-05	362.5568280367946	43.913	0.56136	43.913	43.757	44.318	0					15	10	2	0	0	0	0.14659	1	15309	15309		42.312	12.875	1	4460500			25056	1199	18107	18242	24533	24533					0.11027158199931364
KIIDIQEKV	9	Unmodified	_KIIDIQEKV_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	A375_MHC_IP_R2	2	362.95709228515625	3	362.557013	1084.64921	-0.025443	-9.2245E-06	-0.48748	-0.00017674	-0.51293	-0.00018597	362.55684588413254	43.078	0.50636	43.851	43.573	44.079	0.7724					14	9	2	0	0	0	0.10637	1	16036	16036		49.527	18.824	1	3955700			25057	1199	18107	18242	24534	24534					0.11027158199931364
KIIDIQEKV	9	Unmodified	_KIIDIQEKV_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-SECPEP	A375_MHC_IP_R2	2	543.7314453125	2	543.331882	1084.64921	-0.71687	-0.0003895	-0.19618	-0.00010659	-0.91305	-0.00049609	543.3317068689565	43.077	0.65793	43.85	43.523	44.181	0.7724					34	12	4	0	0	0	2.7177E-08	1	16011	16011		228.37	110.3	1	26123000			25058	1199	18107	18242	24535	24535					0.11027158199931364
KIIDLLKRFLF	11	Unmodified	_KIIDLLKRFLF_					0	0	0		ENST00000437626.5_1_21:46645550-46645877:+|nuORF	ENST00000437626.5_1_21:46645550-46645877:+|nuORF	ENST00000437626.5_1_21:46645550-46645877:+|nuORF	MSMS	A375_MHC_IP_R2	2	703.4491577148438	2	703.450123	1404.88569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.998	1	19.602	19.102	20.102	0.60308								0	0	0	0.16353	1	5755	5755		0.35063	0	1				25059	11940	18108	18243	24536	24536					0.19944509764241047
KIIDLLPKV	9	Unmodified	_KIIDLLPKV_					0	0	0		ENSG00000213341|ENST00000370397|CHUK;ENST00000590930.5_1_10:101953728-101953884:-|nuORF	ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	MULTI-SECPEP	A375_MHC_IP_R1	1	520.249267578125	2	519.84971	1037.68487	-0.38918	-0.00020232	-0.20326	-0.00010567	-0.59244	-0.00030798	519.8495777483071	88.808	0.71046	88.808	88.51	89.221	0					22	13	2	0	0	0	0.076731	1	32597	32597		40.725	9.4566	1	4190700			25060	9563	18109	18244	24537	24537					0.1675324044761055
KIIDLLPKV	9	Unmodified	_KIIDLLPKV_					0	0	0		ENSG00000213341|ENST00000370397|CHUK;ENST00000590930.5_1_10:101953728-101953884:-|nuORF	ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	MULTI-MSMS	A375_MHC_IP_R2	2	519.985595703125	2	519.84971	1037.68487	-0.57676	-0.00029983	0.12637	6.5692E-05	-0.45039	-0.00023414	519.8498015651578	87.732	0.70884	88.464	88.166	88.875	0.7318					30	13	3	0	0	0	0.59859	1	33298	33298		14.957	2.7165	1	2811900			25061	9563	18109	18244	24538	24538					0.1675324044761055
KIIEDLGVHF	10	Unmodified	_KIIEDLGVHF_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	A375_MHC_IP_R1	1	586.2291259765625	2	585.829506	1169.64446	-0.063899	-3.7434E-05	0.16951	9.9306E-05	0.10562	6.1873E-05	586.3312384354333	78.757	0.35404	78.757	78.606	78.96	0					11	6	2	0	0	0	0.040521	1	28755	28755		100.09	63.964	1	3110100			25062	3688	18110	18245	24539	24539					0.06642274057185205
KIIEDLGVHF	10	Unmodified	_KIIEDLGVHF_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MATCH	A375_MHC_IP_R2	2		2	585.829506	1169.64446	-0.5154	-0.00030194	0.13717	8.0359E-05	-0.37823	-0.00022158	585.8295593058663	77.86	0.41013	78.603	78.468	78.878	0.74294	-0.07722	-7.273E-06	NaN	100.09	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1902800			25063	3688	18110	18245							0.06642274057185205
KIIEKNTIPI	10	Unmodified	_KIIEKNTIPI_					0	0	0			REV__ENSG00000118507|ENST00000431975|AKAP7	REV__ENSG00000118507|ENST00000431975|AKAP7	MSMS	A375_MHC_IP_R1	1	390.2969665527344	3	390.24818	1167.72271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.23	1	61.23	60.73	61.73	0								0	0	0	0.14998	1	22067	22067		17.863	9.1114	1		+		25064	18045	18111	18246	24540	24540					0.1455570664240895
KIIGIMEEV	9	Oxidation (M)	_KIIGIM(Oxidation (M))EEV_		KIIGIM(1)EEV		KIIGIM(60)EEV	0	0	1		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	A375_MHC_IP_R1	1	524.6906127929688	2	524.291368	1046.56818	-0.47706	-0.00025012	-0.26517	-0.00013903	-0.74223	-0.00038915	524.2913084672952	57.466	0.91455	57.466	57.263	58.177	0					38	17	3	0	0	0	0.06083	1	20616	20616		60.074	23.947	1	6034100			25065	3365	18112	18247	24541	24541		164			0.04676134165538315
KIIGIMEEV	9	Oxidation (M)	_KIIGIM(Oxidation (M))EEV_		KIIGIM(1)EEV		KIIGIM(73)EEV	0	0	1		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-SECPEP	A375_MHC_IP_R2	2	524.3748168945312	2	524.291368	1046.56818	-0.92671	-0.00048587	-0.39305	-0.00020607	-1.3198	-0.00069194	524.291047200017	56.604	0.86857	57.355	57.101	57.969	0.75015					23	16	2	0	0	0	0.061442	1	21384	21384		72.968	40.182	1	5276900			25066	3365	18112	18247	24542	24542		164			0.04676134165538315
KIIGIMEEV	9	Unmodified	_KIIGIMEEV_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	A375_MHC_IP_R1	1	516.6936645507812	2	516.293911	1030.57327	-0.51723	-0.00026704	-0.18027	-9.3073E-05	-0.6975	-0.00036012	516.2937393502343	81.573	0.65777	81.573	81.303	81.961	0					26	12	3	0	0	0	0.018261	2	29778	29778;29806		85.642	43.802	1	6240700			25067	3365	18112	18248	24543;24544	24543					0.05920438028147146
KIIGIMEEV	9	Unmodified	_KIIGIMEEV_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	A375_MHC_IP_R2	2	516.693359375	2	516.293911	1030.57327	-0.81161	-0.00041903	0.11894	6.1406E-05	-0.69267	-0.00035762	516.2938606822677	80.595	0.56081	81.34	81.062	81.622	0.74474					21	10	3	0	0	0	0.018261	1	30602	30602		85.642	41.783	1	9130000			25068	3365	18112	18248	24545	24545					0.05920438028147146
KIIKIIITV	9	Unmodified	_KIIKIIITV_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R1	1	521.2752685546875	2	520.875728	1039.7369	-0.48279	-0.00025148	-0.2032	-0.00010584	-0.68599	-0.00035732	520.8754619324135	77.541	0.96664	77.541	77.184	78.15	0					27	18	2	0	0	0	0.47674	1	28292	28292		29.841	9.387	1	1972500			25069	14788	18113	18249	24546	24546					0.2186240386135978
KIIKIIITV	9	Unmodified	_KIIKIIITV_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R2	2	521.2752685546875	2	520.875728	1039.7369	-0.62531	-0.00032571	-0.1811	-9.4329E-05	-0.80641	-0.00042004	520.8756395177279	76.317	0.71118	77.058	76.893	77.604	0.74052					24	13	2	0	0	0	0.29123	1	29005	29005		31.268	16.02	1	2252800			25070	14788	18113	18249	24547	24547					0.2186240386135978
KIIKKGKHHLY	11	Unmodified	_KIIKKGKHHLY_					0	0	0			REV__tr|U7SWZ0|U7SWZ0_FUSNUMethionineimportATP-bindingproteinMetNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01221PE=4SV=1	REV__tr|U7SWZ0|U7SWZ0_FUSNUMethionineimportATP-bindingproteinMetNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01221PE=4SV=1	MSMS	A375_MHC_IP_R1	1	682.8906860351562	2	682.929889	1363.84522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.17	1	106.17	105.67	106.67	0								0	0	0	0.16331	1	38973	38973		1.4819	0	1		+		25071	28615	18114	18250	24548	24548					0.1778558816452005
KIINSIKEF	9	Unmodified	_KIINSIKEF_					0	0	0			REV__ENSG00000155876|ENST00000380527|RRAGA	REV__ENSG00000155876|ENST00000380527|RRAGA	MULTI-SECPEP	A375_MHC_IP_R2	2	546.7258911132812	2	546.326599	1090.63865	-1.0701	-0.00058463	-0.10587	-5.784E-05	-1.176	-0.00064247	546.3265139853673	57.854	0.55606	58.603	58.323	58.879	0.74894					21	10	3	0	0	0	0.18869	1	21861	21861		67.838	16.423	1	10601000	+		25072	16809	18115	18251	24549	24549					0.09695175545516577
KIIQYRGP	8	Unmodified	_KIIQYRGP_					0	0	0			REV__TBC1D3B|p.M131I|1|0.16|ENSG00000274808|chr17:36171959-36171959|C/T|missense_variant	REV__TBC1D3B|p.M131I|1|0.16|ENSG00000274808|chr17:36171959-36171959|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	487.2075500488281	2	487.792727	973.5709	-0.61487	-0.00029993	0.28433	0.00013869	-0.33054	-0.00016124	487.79288775464346	31.21	0.51217	31.929	31.719	32.231	0.71857					13	9	2	0	0	0	0.86765	1	11093	11093		24.674	24.674	1	1167300	+		25073	28083	18116	18252	24550	24550					0.08305770405377189
KIITQFQRY	9	Unmodified	_KIITQFQRY_					0	0	0		APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1	APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant	APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	598.6718139648438	2	598.842948	1195.67134	-0.90336	-0.00054097	-0.77933	-0.0004667	-1.6827	-0.0010077	598.842395198833	59.729	0.35458	60.476	60.299	60.653	0.74714					12	6	2	0	0	0	0.74412	1	22610	22610		10.074	0	1	2172300			25074	156	18117	18253	24551	24551					0.08133382668370359
KIITQFQRY	9	Unmodified	_KIITQFQRY_					0	0	0		APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1	APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant	APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	598.842948	1195.67134	-0.4078	-0.00024421	-1.5326	-0.00091781	-1.9404	-0.001162	598.8419923345856	60.694	0.40728	60.694	60.464	60.871	0	0.10907	-0.00043543	NaN	10.074	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2128000			25075	156	18117	18253							0.08133382668370359
KIIVSFETY	9	Unmodified	_KIIVSFETY_					0	0	0			REV__ENSG00000114166|ENST00000263754|KAT2B	REV__ENSG00000114166|ENST00000263754|KAT2B	MULTI-MSMS	A375_MHC_IP_R2	2	550.7049560546875	2	550.305332	1098.59611	-0.72407	-0.00039846	0.38053	0.00020941	-0.34353	-0.00018905	550.3054866044514	70.238	0.65953	70.972	70.54	71.2	0.73421					16	12	2	0	0	0	0.32092	1	26656	26656		29.082	7.3349	1	1576200	+		25076	17815	18118	18254	24552	24552					0.05075780417291753
KIIYISPP	8	Unmodified	_KIIYISPP_					0	0	0		SPATA5L1|p.P651S|1|0.46|ENSG00000171763|chr15:45417382-45417382|C/T|missense_variant	SPATA5L1|p.P651S|1|0.46|ENSG00000171763|chr15:45417382-45417382|C/T|missense_variant	SPATA5L1|p.P651S|1|0.46|ENSG00000171763|chr15:45417382-45417382|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	465.6872253417969	2	465.786579	929.558604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.6	1	147.6	147.1	148.1	0								0	0	0	0.16876	1	56394	56394		0.69038	0	1				25077	29230	18119	18255	24553	24553					0.09100733942329953
KIIYISPP	8	Unmodified	_KIIYISPP_					0	0	0		SPATA5L1|p.P651S|1|0.46|ENSG00000171763|chr15:45417382-45417382|C/T|missense_variant	SPATA5L1|p.P651S|1|0.46|ENSG00000171763|chr15:45417382-45417382|C/T|missense_variant	SPATA5L1|p.P651S|1|0.46|ENSG00000171763|chr15:45417382-45417382|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	465.6869812011719	2	465.786579	929.558604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.64	1	147.66	147.16	148.16	0.019913								0	0	0	0.16876	1	57385	57385		0.69038	0.16561	1				25078	29230	18119	18255	24554	24554					0.09100733942329953
KIKDFASHF	9	Unmodified	_KIKDFASHF_					0	0	0		ENSG00000056277|ENST00000370978|ZNF280C	ENSG00000056277|ENST00000370978|ZNF280C	ENSG00000056277|ENST00000370978|ZNF280C	MULTI-SECPEP	A375_MHC_IP_R1	1	365.26605224609375	3	364.86607	1091.57638	0.38302	0.00013975	-0.35251	-0.00012862	0.030516	1.1134E-05	364.86590707845136	35.827	0.66284	35.827	35.573	36.236	0					27	12	3	0	0	0	0.10495	1	11943	11943		49.527	35.912	1	9344600			25079	1277	18120	18256	24555	24555					0.03425449197175112
KIKDFASHF	9	Unmodified	_KIKDFASHF_					0	0	0		ENSG00000056277|ENST00000370978|ZNF280C	ENSG00000056277|ENST00000370978|ZNF280C	ENSG00000056277|ENST00000370978|ZNF280C	MULTI-MSMS	A375_MHC_IP_R2	2	365.265869140625	3	364.86607	1091.57638	-0.18978	-6.9246E-05	0.08114	2.9605E-05	-0.10864	-3.9641E-05	364.86608498979547	34.756	0.55606	35.519	35.273	35.829	0.76338					18	10	2	0	0	0	0.068071	1	12560	12560		57.249	29.62	1	11984000			25080	1277	18120	18256	24556	24556					0.03425449197175112
KIKDSKFDDW	10	Unmodified	_KIKDSKFDDW_					0	0	0		ENST00000554366.5_1_14:70793052-70794903:-|nuORF;ENSG00000133983|ENST00000389912|COX16	ENST00000554366.5_1_14:70793052-70794903:-|nuORF	ENST00000554366.5_1_14:70793052-70794903:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	428.2872314453125	3	427.88731	1280.6401	-0.35641	-0.0001525	0.25017	0.00010705	-0.10624	-4.5458E-05	427.88733828785087	32.518	0.50394	32.518	32.231	32.734	0					16	9	3	0	0	0	0.62001	1	10520	10520		29.281	17.65	1	4291500			25081	4540	18121	18257	24557	24557					0.011007648436134332
KIKDSKFDDW	10	Unmodified	_KIKDSKFDDW_					0	0	0		ENST00000554366.5_1_14:70793052-70794903:-|nuORF;ENSG00000133983|ENST00000389912|COX16	ENST00000554366.5_1_14:70793052-70794903:-|nuORF	ENST00000554366.5_1_14:70793052-70794903:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	428.2870788574219	3	427.88731	1280.6401	-0.213	-9.114E-05	0.32021	0.00013702	0.10721	4.5875E-05	427.8872554268504	31.695	0.50635	32.432	32.198	32.704	0.73692					20	9	3	0	0	0	0.12874	1	11211	11211		57.477	34.819	1	4293400			25082	4540	18121	18257	24558	24558					0.011007648436134332
KIKDYLEELW	10	Unmodified	_KIKDYLEELW_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000560694.1_1_17:78328263-78334101:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	A375_MHC_IP_R1	1	668.214599609375	2	668.861003	1335.70745	-0.56209	-0.00037596	-0.27384	-0.00018316	-0.83594	-0.00055913	668.8609191134892	103.69	0.35701	103.69	103.47	103.83	0					10	6	2	0	0	0	0.85215	1	38056	38056		17.443	5.9479	1	1696300			25083	7831	18122	18258	24559	24559					0.053027950545583735
KIKFFLKIWPW	11	Unmodified	_KIKFFLKIWPW_					0	0	0			REV__MYH2|p.M836I|1|0.08|ENSG00000125414|chr17:10531822-10531822|C/T|missense_variant	REV__MYH2|p.M836I|1|0.08|ENSG00000125414|chr17:10531822-10531822|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	753.2982177734375	2	753.455208	1504.89586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.04	1	124.04	123.54	124.54	0								0	0	0	0.16307	1	46533	46533		2.7352	0.45242	1		+		25084	27060	18123	18259	24560	24560					0.16361117489486787
KIKKKKKYLRL	11	Unmodified	_KIKKKKKYLRL_					0	0	0		ENST00000376510.7_1_10:23409918-23410092:+|nuORF	ENST00000376510.7_1_10:23409918-23410092:+|nuORF	ENST00000376510.7_1_10:23409918-23410092:+|nuORF	MSMS	A375_MHC_IP_R2	2	723.8674926757812	2	723.505764	1444.99697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.92	1	144.94	144.44	145.44	0.021408								0	0	0	0.1636	1	56594	56594		0	0	1				25085	11285	18124	18260	24561	24561					0.2922756919222138
KIKLEFETY	9	Unmodified	_KIKLEFETY_					0	0	0		ENSG00000154767|ENST00000285021|XPC;nc|ENSG00000154767|Q01831-2|XPC;ENST00000455144.6_1_3:14206267-14209863:-|nuORF	ENSG00000154767|ENST00000285021|XPC	ENSG00000154767|ENST00000285021|XPC	MULTI-SECPEP	A375_MHC_IP_R1	1	391.2853088378906	3	390.885018	1169.63323	0.14311	5.594E-05	0.29741	0.00011625	0.44052	0.00017219	390.8850360091673	59.279	0.40645	59.279	59.092	59.498	0					16	7	3	0	0	0	0.59614	1	21344	21344		22.658	11.859	1	2730700			25086	6107	18125	18261	24562	24562					0.05519451963027677
KIKLEFETY	9	Unmodified	_KIKLEFETY_					0	0	0		ENSG00000154767|ENST00000285021|XPC;nc|ENSG00000154767|Q01831-2|XPC;ENST00000455144.6_1_3:14206267-14209863:-|nuORF	ENSG00000154767|ENST00000285021|XPC	ENSG00000154767|ENST00000285021|XPC	MULTI-SECPEP	A375_MHC_IP_R2	2	391.2847900390625	3	390.885018	1169.63323	-0.48019	-0.0001877	0.21774	8.5113E-05	-0.26244	-0.00010258	390.88505283422967	58.36	0.55951	59.109	58.829	59.389	0.74894					24	10	3	0	0	0	0.57806	1	22089	22089		24.882	8.3157	1	2924600			25087	6107	18125	18261	24563	24563					0.05519451963027677
KIKRKKRVLLL	11	Unmodified	_KIKRKKRVLLL_					0	0	0			REV__ENST00000567674.1_1_16:68721613-68732300:+|nuORF	REV__ENST00000567674.1_1_16:68721613-68732300:+|nuORF	MSMS	A375_MHC_IP_R2	2	698.0811157226562	2	698.005931	1393.99731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.61	1	123.96	123.46	124.46	0.35049								0	0	0	0.1636	1	47574	47574		0	0	1		+		25088	16455	18126	18262	24564	24564					0.3160698891206266
KIKVDNHLF	9	Unmodified	_KIKVDNHLF_					0	0	0		ENST00000432610.1_1_10:22896825-22898637:-|nuORF;ENST00000422321.5_1_10:22856588-22898637:-|nuORF;nc|ENSG00000276293|P78356-2|PIP4K2B;nc|ENSG00000150867|P48426-2|PIP4K2A;ENSG00000150867|ENST00000376573|PIP4K2A;ENSG00000276293|ENST00000619039|PIP4K2B	ENST00000432610.1_1_10:22896825-22898637:-|nuORF	ENST00000432610.1_1_10:22896825-22898637:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	372.28533935546875	3	371.885353	1112.63423	0.15156	5.6363E-05	0.31421	0.00011685	0.46577	0.00017321	371.8854097103301	38.444	0.81486	38.444	38.067	38.882	0					36	14	4	0	0	0	0.23894	1	13018	13018		31.636	4.4125	1	23228000			25089	5866	18127	18263	24565	24565					0.08241711122605011
KIKVDNHLF	9	Unmodified	_KIKVDNHLF_					0	0	0		ENST00000432610.1_1_10:22896825-22898637:-|nuORF;ENST00000422321.5_1_10:22856588-22898637:-|nuORF;nc|ENSG00000276293|P78356-2|PIP4K2B;nc|ENSG00000150867|P48426-2|PIP4K2A;ENSG00000150867|ENST00000376573|PIP4K2A;ENSG00000276293|ENST00000619039|PIP4K2B	ENST00000432610.1_1_10:22896825-22898637:-|nuORF	ENST00000432610.1_1_10:22896825-22898637:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	372.2850036621094	3	371.885353	1112.63423	0.043192	1.6063E-05	-0.34001	-0.00012645	-0.29682	-0.00011038	371.8851856035469	37.434	0.81836	38.205	37.917	38.735	0.7709					35	13	5	0	0	0	0.27742	1	13660	13660		40.725	13.502	1	18670000			25090	5866	18127	18263	24566	24566					0.08241711122605011
KIKVNNHLF	9	Unmodified	_KIKVNNHLF_					0	0	0		ENSG00000166908|ENST00000354947|PIP4K2C;nc|ENSG00000166908|Q8TBX8-2|PIP4K2C	ENSG00000166908|ENST00000354947|PIP4K2C	ENSG00000166908|ENST00000354947|PIP4K2C	MULTI-MSMS	A375_MHC_IP_R1	1	371.95745849609375	3	371.557348	1111.65021	0.098459	3.6583E-05	-0.41321	-0.00015353	-0.31475	-0.00011695	371.55732913360316	32.533	0.55374	32.533	32.333	32.887	0					19	10	2	0	0	0	0.46465	1	10529	10529		21.537	9.2963	1	3585100			25091	7131	18128	18264	24567	24567					0.09885417359487292
KIKVNNHLF	9	Unmodified	_KIKVNNHLF_					0	0	0		ENSG00000166908|ENST00000354947|PIP4K2C;nc|ENSG00000166908|Q8TBX8-2|PIP4K2C	ENSG00000166908|ENST00000354947|PIP4K2C	ENSG00000166908|ENST00000354947|PIP4K2C	MULTI-MSMS	A375_MHC_IP_R2	2	371.9571838378906	3	371.557348	1111.65021	0.41311	0.00015349	-0.16724	-6.2139E-05	0.24587	9.1356E-05	371.89158199813596	31.588	0.35834	32.325	32.146	32.504	0.73692					11	6	2	0	0	0	0.64971	1	11194	11194		11.495	2.7493	1	4798700			25092	7131	18128	18264	24568	24568					0.09885417359487292
KIKVNNHLF	9	Unmodified	_KIKVNNHLF_					0	0	0		ENSG00000166908|ENST00000354947|PIP4K2C;nc|ENSG00000166908|Q8TBX8-2|PIP4K2C	ENSG00000166908|ENST00000354947|PIP4K2C	ENSG00000166908|ENST00000354947|PIP4K2C	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	371.557348	1111.65021	0.41311	0.00015349	-0.16724	-6.2139E-05	0.24587	9.1356E-05	371.89158199813596	31.588	0.35834	32.325	32.146	32.504	0.73692	-0.10397	5.65E-05	NaN	21.537	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4798700			25093	7131	18128	18264							0.09885417359487292
KIKYPENFF	9	Unmodified	_KIKYPENFF_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENSG00000213639|ENST00000395366|PPP1CB;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	A375_MHC_IP_R1	1	593.7186279296875	2	593.318774	1184.623	-0.35286	-0.00020936	0.031228	1.8528E-05	-0.32163	-0.00019083	593.3187230825096	63.812	1.1701	63.812	63.427	64.597	0					66	22	5	0	0	0	0.0099672	1	23019	23019		145.13	69.369	1	53908000			25094	7718;9575;14768	18129	18265	24569	24569					0.038068890284421286
KIKYPENFF	9	Unmodified	_KIKYPENFF_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENSG00000213639|ENST00000395366|PPP1CB;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	A375_MHC_IP_R1	1	396.28131103515625	3	395.881608	1184.623	-0.047899	-1.8962E-05	0.043422	1.719E-05	-0.0044774	-1.7725E-06	395.8815641042584	63.812	1.1701	63.812	63.427	64.597	0					63	22	5	0	0	0	0.027818	1	23026	23026		76.825	38.21	1	46407000			25095	7718;9575;14768	18129	18265	24570	24570					0.038068890284421286
KIKYPENFF	9	Unmodified	_KIKYPENFF_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENSG00000213639|ENST00000395366|PPP1CB;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	A375_MHC_IP_R2	2	396.6158752441406	3	395.881608	1184.623	-0.097274	-3.8509E-05	0.14124	5.5916E-05	0.043969	1.7407E-05	395.8816131244559	62.917	1.1148	63.659	63.282	64.397	0.74263					62	21	5	0	0	0	0.062639	1	23796	23796		59.368	36.71	1	57185000			25096	7718;9575;14768	18129	18265	24571	24571					0.038068890284421286
KIKYPENFF	9	Unmodified	_KIKYPENFF_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENSG00000213639|ENST00000395366|PPP1CB;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	A375_MHC_IP_R2	2	593.7185668945312	2	593.318774	1184.623	-0.53577	-0.00031788	0.29773	0.00017665	-0.23805	-0.00014124	593.3188565898985	62.917	0.96171	63.659	63.282	64.244	0.74263					56	18	5	0	0	0	0.010047	1	23798	23798		148.27	81.811	1	58895000			25097	7718;9575;14768	18129	18265	24572	24572					0.038068890284421286
KILDLETQL	9	Unmodified	_KILDLETQL_					0	0	0		ENST00000488909.1_1_9:131260677-131262531:+|nuORF;nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2;ENSG00000136811|ENST00000351030|ODF2	ENST00000488909.1_1_9:131260677-131262531:+|nuORF	ENST00000488909.1_1_9:131260677-131262531:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	537.8501586914062	2	536.816064	1071.61758	-0.90585	-0.00048627	0.19517	0.00010477	-0.71068	-0.0003815	536.8160831934388	85.896	1.4174	85.896	85.616	87.034	0					60	27	4	0	0	0	0.026372	1	31496	31496		78.06	17.987	1	29790000			25098	4819	18130	18266	24573	24573					0.08463165446005405
KILDLETQL	9	Unmodified	_KILDLETQL_					0	0	0		ENST00000488909.1_1_9:131260677-131262531:+|nuORF;nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2;ENSG00000136811|ENST00000351030|ODF2	ENST00000488909.1_1_9:131260677-131262531:+|nuORF	ENST00000488909.1_1_9:131260677-131262531:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	536.647705078125	2	536.816064	1071.61758	-0.73598	-0.00039508	-0.012026	-6.4556E-06	-0.748	-0.00040154	536.8159743241189	85.019	1.4269	85.755	85.472	86.899	0.73601					62	27	4	0	0	0	0.024574	1	32403	32403		79.596	4.6673	1	23966000			25099	4819	18130	18266	24574	24574					0.08463165446005405
KILDPTASV	9	Unmodified	_KILDPTASV_					0	0	0		nc|ENSG00000122778|Q9HCM3-2|KIAA1549;ENSG00000122778|ENST00000422774|KIAA1549;nc|ENSG00000122778|Q9HCM3-3|KIAA1549;nc|ENSG00000122778|Q9HCM3-4|KIAA1549	nc|ENSG00000122778|Q9HCM3-2|KIAA1549	nc|ENSG00000122778|Q9HCM3-2|KIAA1549	MULTI-SECPEP	A375_MHC_IP_R1	1	472.6766052246094	2	472.276575	942.538597	-0.45297	-0.00021393	0.082708	3.9061E-05	-0.37026	-0.00017487	472.276593673204	50.504	0.71507	50.504	49.998	50.713	0					22	13	2	0	0	0	0.03109	1	17874	17874		92.653	44.905	1	4460200			25100	3808	18131	18267	24575	24575					0.06502938211713172
KILDPTASV	9	Unmodified	_KILDPTASV_					0	0	0		nc|ENSG00000122778|Q9HCM3-2|KIAA1549;ENSG00000122778|ENST00000422774|KIAA1549;nc|ENSG00000122778|Q9HCM3-3|KIAA1549;nc|ENSG00000122778|Q9HCM3-4|KIAA1549	nc|ENSG00000122778|Q9HCM3-2|KIAA1549	nc|ENSG00000122778|Q9HCM3-2|KIAA1549	MULTI-MSMS	A375_MHC_IP_R2	2	472.6761474609375	2	472.276575	942.538597	-0.85909	-0.00040573	0.29434	0.00013901	-0.56474	-0.00026671	472.27665267180373	49.583	0.96365	50.34	50.046	51.009	0.75737					26	18	2	0	0	0	0.015356	1	18644	18644		89.401	43.701	1	4226600			25101	3808	18131	18267	24576	24576					0.06502938211713172
KILDYEVTL	9	Unmodified	_KILDYEVTL_					0	0	0		nc|ENSG00000134352|P40189-3|IL6ST;ENSG00000134352|ENST00000381298|IL6ST;ENST00000503773.6_1_5:55236912-55256289:-|nuORF;ENST00000506241.1_1_5:55251841-55256299:-|nuORF	nc|ENSG00000134352|P40189-3|IL6ST	nc|ENSG00000134352|P40189-3|IL6ST	MULTI-MSMS	A375_MHC_IP_R1	1	546.702880859375	2	547.310615	1092.60668	-0.60284	-0.00032994	-0.072829	-3.986E-05	-0.67567	-0.0003698	547.3105156872098	89.8	3.2416	89.8	88.919	92.16	0					132	58	5	0	0	0	0.012843	2	32958	32958;32986		92.653	40.385	1	206120000			25102	4569	18132	18268	24577;24578	24577					0.0640776307170654
KILDYEVTL	9	Unmodified	_KILDYEVTL_					0	0	0		nc|ENSG00000134352|P40189-3|IL6ST;ENSG00000134352|ENST00000381298|IL6ST;ENST00000503773.6_1_5:55236912-55256289:-|nuORF;ENST00000506241.1_1_5:55251841-55256299:-|nuORF	nc|ENSG00000134352|P40189-3|IL6ST	nc|ENSG00000134352|P40189-3|IL6ST	MULTI-MSMS	A375_MHC_IP_R2	2	547.7100830078125	2	547.310615	1092.60668	-0.70979	-0.00038848	-0.34193	-0.00018714	-1.0517	-0.00057562	547.3103351024283	88.994	2.9403	89.726	88.976	91.916	0.7318					151	57	5	0	0	0	0.012843	1	34033	34033		92.653	32.579	1	171100000			25103	4569	18132	18268	24579	24579					0.0640776307170654
KILEDTQFV	9	Unmodified	_KILEDTQFV_					0	0	0		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-SECPEP	A375_MHC_IP_R1	1	547.2000122070312	2	546.800414	1091.58628	-0.88848	-0.00048582	0.91779	0.00050185	0.029315	1.603E-05	546.8007010103177	67.506	1.0657	67.506	67.194	68.26	0					23	20	2	0	0	0	0.41434	1	24479	24479		39.95	10.868	1	2301600			25104	6927	18133	18269	24580	24580					0.04414592411899321
KILEDVVGV	9	Unmodified	_KILEDVVGV_					0	0	0		nc|ENSG00000088325|Q9ULW0-2|TPX2;ENSG00000088325|ENST00000300403|TPX2;TPX2|p.T464S|1|0.33|ENSG00000088325|chr20:31783898-31783898|A/T|missense_variant	nc|ENSG00000088325|Q9ULW0-2|TPX2	nc|ENSG00000088325|Q9ULW0-2|TPX2	MULTI-SECPEP	A375_MHC_IP_R1	1	485.6299743652344	2	486.292225	970.569897	-0.2466	-0.00011992	-0.118	-5.7384E-05	-0.36461	-0.00017731	486.2921116301389	74.47	1.3684	74.47	74.095	75.464	0					58	26	4	0	0	0	0.070665	1	27080	27080		69.105	23.405	1	19063000			25105	1889	18134	18270	24581	24581					0.08343511245811897
KILEDVVGV	9	Unmodified	_KILEDVVGV_					0	0	0		nc|ENSG00000088325|Q9ULW0-2|TPX2;ENSG00000088325|ENST00000300403|TPX2;TPX2|p.T464S|1|0.33|ENSG00000088325|chr20:31783898-31783898|A/T|missense_variant	nc|ENSG00000088325|Q9ULW0-2|TPX2	nc|ENSG00000088325|Q9ULW0-2|TPX2	MULTI-SECPEP	A375_MHC_IP_R2	2	485.6297302246094	2	486.292225	970.569897	-0.55805	-0.00027138	0.13535	6.5818E-05	-0.42271	-0.00020556	486.2922203960899	73.584	1.3245	74.32	73.887	75.211	0.73541					55	25	4	0	0	0	0.070665	1	27938	27938		69.105	16.837	1	25582000			25106	1889	18134	18270	24582	24582					0.08343511245811897
KILEELQKV	9	Unmodified	_KILEELQKV_					0	0	0		ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17	ENSG00000132466|ENST00000358602|ANKRD17	ENSG00000132466|ENST00000358602|ANKRD17	MULTI-MSMS	A375_MHC_IP_R1	1	367.6289978027344	3	367.228897	1098.66486	0.37222	0.00013669	0.17119	6.2866E-05	0.54341	0.00019956	367.2288102313698	51.961	0.55913	51.961	51.728	52.287	0					24	10	4	0	0	0	0.6421	1	18457	18457		12.175	3.1985	1	5815600			25107	4411	18135	18271	24583	24583					0.1194744471699778
KILEELQKV	9	Unmodified	_KILEELQKV_					0	0	0		ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17	ENSG00000132466|ENST00000358602|ANKRD17	ENSG00000132466|ENST00000358602|ANKRD17	MULTI-SECPEP	A375_MHC_IP_R1	1	550.183349609375	2	550.339707	1098.66486	-0.42964	-0.00023645	0.14729	8.106E-05	-0.28235	-0.00015539	550.3397423684326	51.956	0.7108	51.956	51.676	52.387	0					35	13	4	0	0	0	0.011004	1	18465	18465		121.35	31.211	1	27275000			25108	4411	18135	18271	24584	24584					0.1194744471699778
KILEELQKV	9	Unmodified	_KILEELQKV_					0	0	0		ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17	ENSG00000132466|ENST00000358602|ANKRD17	ENSG00000132466|ENST00000358602|ANKRD17	MULTI-MSMS	A375_MHC_IP_R2	2	367.6288757324219	3	367.228897	1098.66486	0.048901	1.7958E-05	0.013356	4.9048E-06	0.062257	2.2863E-05	367.2287892075933	51.035	0.65761	51.789	51.462	52.12	0.75406					23	12	3	0	0	0	0.23226	1	19185	19185		35.612	4.9088	1	7226000			25109	4411	18135	18271	24585	24585					0.1194744471699778
KILEELQKV	9	Unmodified	_KILEELQKV_					0	0	0		ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17	ENSG00000132466|ENST00000358602|ANKRD17	ENSG00000132466|ENST00000358602|ANKRD17	MULTI-SECPEP	A375_MHC_IP_R2	2	550.7392578125	2	550.339707	1098.66486	-0.89054	-0.0004901	0.04909	2.7016E-05	-0.84145	-0.00046308	550.3396891353367	51.034	0.86047	51.788	51.513	52.373	0.75406					38	16	4	0	0	0	0.011004	1	19176	19176		110.79	20.658	1	27201000			25110	4411	18135	18271	24586	24586					0.1194744471699778
KILEINPKL	9	Unmodified	_KILEINPKL_					0	0	0		ENST00000534793.1_1_11:113205756-113210225:+|nuORF;ENSG00000149292|ENST00000529221|TTC12;nc|ENSG00000149292|Q9H892-2|TTC12	ENST00000534793.1_1_11:113205756-113210225:+|nuORF	ENST00000534793.1_1_11:113205756-113210225:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	534.7444458007812	2	534.344792	1066.67503	-0.66614	-0.00035595	-0.2899	-0.00015491	-0.95604	-0.00051085	534.3447397577527	57.513	0.50871	57.513	57.364	57.873	0					18	9	3	0	0	0	0.33243	1	20676	20676		28.234	10.791	1	1550100			25111	5798	18136	18272	24587	24587					0.1443605244223818
KILKGEYAVR	10	Unmodified	_KILKGEYAVR_					0	0	0		nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-2|DDX1;ENST00000470674.1_1_2:15763561-15768670:+|nuORF	nc|ENSG00000079785|Q92499-3|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	MULTI-MSMS	A375_MHC_IP_R2	2	392.92547607421875	3	392.908157	1175.70264	-0.50622	-0.0001989	-0.62486	-0.00024551	-1.1311	-0.00044441	393.24221679064334	20.116	0.40453	20.726	20.399	20.803	0.61029					10	7	2	0	0	0	0.68889	1	6232	6232		14.218	4.4539	1	1062000			25112	1702	18137	18273	24588	24588					0.12181955702453706
KILKVLRVLR	10	Unmodified	_KILKVLRVLR_					0	0	0		CACNA1D|p.R984K|1|0.34|ENSG00000157388|chr3:53744772-53744772|G/A|missense_variant	CACNA1D|p.R984K|1|0.34|ENSG00000157388|chr3:53744772-53744772|G/A|missense_variant	CACNA1D|p.R984K|1|0.34|ENSG00000157388|chr3:53744772-53744772|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	413.5228576660156	3	413.299209	1236.8758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.45	1	143.45	142.95	143.95	0								0	0	0	0.15637	1	55030	55030		0.15932	0.15932	1				25113	276	18138	18274	24589	24589					0.26683366549536913
KILLKRRGVKV	11	Unmodified	_KILLKRRGVKV_					0	0	0		HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|122|3|sense	HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|122|3|sense	HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|122|3|sense	MSMS	A375_MHC_IP_R1	1	437.61517333984375	3	437.309996	1308.90816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.52	1	144.52	144.02	145.02	0								0	0	0	0.16358	1	55421	55421		0.08335	0.08335	1				25114	14111	18139	18275	24590	24590					0.26606153952525347
KILLLVLYL	9	Unmodified	_KILLLVLYL_					0	0	0			REV__ENST00000539764.1_3_11:73689441-73691800:-|nuORF	REV__ENST00000539764.1_3_11:73689441-73691800:-|nuORF	MSMS	A375_MHC_IP_R1	1	363.297119140625	3	363.254494	1086.74165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.493	1	67.493	66.993	67.993	0								0	0	0	0.15486	1	24459	24459		1.0715	0	1		+		25115	25948	18140	18276	24591	24591					0.2017528800411128
KILLYFHRYRD	11	Unmodified	_KILLYFHRYRD_					0	0	0			REV__ENST00000519875.1_1_8:21997445-21997756:-|nuORF	REV__ENST00000519875.1_1_8:21997445-21997756:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	508.93115234375	3	508.620899	1522.84087	-0.81706	-0.00041558	-2.7479	-0.0013977	-3.565	-0.0018132	508.6195929619531	32.909	0.2037	33.646	33.518	33.722	0.73692					6	3	2	0	0	0	0.73807	1	11765	11765		1.2148	0.80657	1	1359400	+		25116	25691	18141	18277	24592	24592					0.1003607895092955
KILNHPRVY	9	Unmodified	_KILNHPRVY_					0	0	0		ENSG00000145996|ENST00000274695|CDKAL1;nc|ENSG00000145996|Q5VV42-2|CDKAL1	ENSG00000145996|ENST00000274695|CDKAL1	ENSG00000145996|ENST00000274695|CDKAL1	MULTI-MSMS	A375_MHC_IP_R1	1	380.9609680175781	3	380.560981	1138.66111	0.2376	9.0421E-05	-1.1011	-0.00041902	-0.86346	-0.0003286	380.5604710103596	25.574	0.45835	25.574	25.408	25.866	0					17	8	3	0	0	0	0.67152	1	7509	7509		9.544	1.0997	1	4520100			25117	5598	18142	18278	24593	24593					0.09732819733812903
KILNHPRVY	9	Unmodified	_KILNHPRVY_					0	0	0		ENSG00000145996|ENST00000274695|CDKAL1;nc|ENSG00000145996|Q5VV42-2|CDKAL1	ENSG00000145996|ENST00000274695|CDKAL1	ENSG00000145996|ENST00000274695|CDKAL1	MULTI-MATCH	A375_MHC_IP_R2	2		3	380.560981	1138.66111	-0.38593	-0.00014687	-1.3384	-0.00050935	-1.7243	-0.00065622	380.5603717223991	24.745	0.45634	25.389	25.212	25.668	0.64368	-0.092703	-0.0001616	NaN	9.544	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2654100			25118	5598	18142	18278							0.09732819733812903
KILNSISLW	9	Unmodified	_KILNSISLW_					0	0	0		TMC5|p.E423K|2|0.26|ENSG00000103534|chr16:19463806-19463806|G/A|missense_variant	TMC5|p.E423K|2|0.26|ENSG00000103534|chr16:19463806-19463806|G/A|missense_variant	TMC5|p.E423K|2|0.26|ENSG00000103534|chr16:19463806-19463806|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	358.95001220703125	3	358.54997	1072.62808	0.098286	3.5241E-05	-0.75716	-0.00027148	-0.65887	-0.00023624	358.54961807634686	53.428	0.91401	53.428	53.099	54.013	0					42	17	3	0	0	0	0.2002	1	19069	19069		28.495	1.2713	1	10358000			25119	29356	18143	18279	24594	24594					0.09467192891088416
KILNSISLW	9	Unmodified	_KILNSISLW_					0	0	0		TMC5|p.E423K|2|0.26|ENSG00000103534|chr16:19463806-19463806|G/A|missense_variant	TMC5|p.E423K|2|0.26|ENSG00000103534|chr16:19463806-19463806|G/A|missense_variant	TMC5|p.E423K|2|0.26|ENSG00000103534|chr16:19463806-19463806|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	358.6132507324219	3	358.54997	1072.62808	-0.63977	-0.00022939	-0.58399	-0.00020939	-1.2238	-0.00043878	358.5496287711607	52.4	0.91241	53.152	52.677	53.59	0.75225					35	14	3	0	0	0	0.4867	1	19738	19738		14.405	0.79051	1	15650000			25120	29356	18143	18279	24595	24595					0.09467192891088416
KILPDLNTV	9	Unmodified	_KILPDLNTV_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	A375_MHC_IP_R1	1	507.205078125	2	506.8055	1011.59645	-0.27693	-0.00014035	-0.28242	-0.00014313	-0.55935	-0.00028348	506.8052838439333	78.12	1.1683	78.12	77.639	78.807	0					61	22	4	0	0	0	0.019499	1	28479	28479		103.42	40.847	1	30724000			25121	5295	18144	18280	24596	24596					0.09111200137135711
KILPDLNTV	9	Unmodified	_KILPDLNTV_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	A375_MHC_IP_R2	2	507.2051696777344	2	506.8055	1011.59645	-0.74277	-0.00037644	-0.15934	-8.0752E-05	-0.9021	-0.00045719	506.8053588786673	77.227	1.3206	77.97	77.303	78.624	0.74293					58	25	4	0	0	0	0.14606	1	29277	29277		55.503	13.663	1	26290000			25122	5295	18144	18280	24597	24597					0.09111200137135711
KILPFSPEF	9	Unmodified	_KILPFSPEF_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-MSMS	A375_MHC_IP_R1	1	539.7026977539062	2	539.302593	1076.59063	-0.41416	-0.00022336	-1.0465	-0.0005644	-1.4607	-0.00078776	539.3026031190834	109.06	0.91191	109.06	108.56	109.47	0					39	17	3	0	0	0	0.02331	1	39983	39983		99.799	57.843	1	4757900			25123	1303	18145	18281	24598	24598					0.0554010162547911
KILPFSPEF	9	Unmodified	_KILPFSPEF_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	539.7023315429688	2	539.302593	1076.59063	-0.85957	-0.00046357	-1.3012	-0.00070175	-2.1608	-0.0011653	539.3025843207396	108.11	0.91975	108.87	108.35	109.27	0.75436					38	17	3	0	0	0	0.03109	1	40823	40823		103.35	53.799	1	5186500			25124	1303	18145	18281	24599	24599					0.0554010162547911
KILPGVKVV	9	Unmodified	_KILPGVKVV_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	MULTI-SECPEP	A375_MHC_IP_R1	1	477.2310791015625	2	476.83132	951.648088	-0.4821	-0.00022988	0.27189	0.00012964	-0.21022	-0.00010024	476.8314275487826	50.206	0.35824	50.206	49.998	50.357	0					10	6	2	0	0	0	0.75164	1	17823	17823		13.906	9.5768	1	2153100			25125	1403	18146	18282	24600	24600					0.1703298862171323
KILPGVKVV	9	Unmodified	_KILPGVKVV_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	MULTI-SECPEP	A375_MHC_IP_R2	2	477.2312316894531	2	476.83132	951.648088	-0.73987	-0.00035279	0.12377	5.9019E-05	-0.6161	-0.00029377	476.8313227572099	49.162	0.35578	49.919	49.69	50.046	0.75737					11	6	2	0	0	0	0.46045	1	18503	18503		22.736	11.096	1	2295600			25126	1403	18146	18282	24601	24601					0.1703298862171323
KILPPVLLLV	10	Unmodified	_KILPPVLLLV_					0	0	0			REV__OR51A2|p.M288I|1|0.37|ENSG00000205496|chr11:4954850-4954850|C/T|missense_variant	REV__OR51A2|p.M288I|1|0.37|ENSG00000205496|chr11:4954850-4954850|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	368.9330749511719	3	368.930011	1103.7682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.956	1	59.956	59.456	60.456	0								0	0	0	0.15642	1	21578	21578		0	0	1		+		25127	27674	18147	18283	24602	24602					0.22046976895467196
KILPTLEAV	9	Unmodified	_KILPTLEAV_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-SECPEP	A375_MHC_IP_R1	1	491.7428894042969	2	492.310418	982.606283	-0.40998	-0.00020184	0.16982	8.3607E-05	-0.24016	-0.00011823	492.31048178919616	80.06	1.373	80.06	79.778	81.151	0					78	26	5	0	0	0	0.0066573	1	29279	29279		152.41	77.989	1	134000000			25128	5414	18148	18284	24603	24603					0.11428388142519452
KILPTLEAV	9	Unmodified	_KILPTLEAV_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	A375_MHC_IP_R2	2	492.71051025390625	2	492.310418	982.606283	-0.42076	-0.00020714	-0.27977	-0.00013773	-0.70052	-0.00034487	492.31027842173773	79.076	1.5727	79.821	79.489	81.062	0.74473					75	30	5	0	0	0	0.02559	1	30162	30162		78.728	44.626	1	117210000			25129	5414	18148	18284	24604	24604					0.11428388142519452
KILPTPETV	9	Unmodified	_KILPTPETV_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ENST00000525178.5_1_11:108217294-108236232:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	A375_MHC_IP_R1	1	499.6997985839844	2	499.30005	996.585547	-0.42467	-0.00021204	-2.9191	-0.0014575	-3.3438	-0.0016695	499.3001048664156	58.19	0.60792	58.19	57.923	58.531	0					33	11	4	0	0	0	0.0094788	1	20875	20875		107.19	49.716	1	6126800			25130	5800	18149	18285	24605	24605					0.08711797762862261
KILQELPSV	9	Unmodified	_KILQELPSV_					0	0	0		nc|ENSG00000163166|Q96ST2-2|IWS1;nc|ENSG00000163166|Q96ST2-3|IWS1;ENSG00000163166|ENST00000295321|IWS1	nc|ENSG00000163166|Q96ST2-2|IWS1	nc|ENSG00000163166|Q96ST2-2|IWS1	MULTI-SECPEP	A375_MHC_IP_R1	1	513.6743774414062	2	513.813325	1025.6121	-0.50278	-0.00025833	-0.064365	-3.3072E-05	-0.56714	-0.00029141	513.8132062160118	74.576	1.115	74.576	74.197	75.312	0					51	21	4	0	0	0	0.010978	1	27190	27190		129.77	67.2	1	33790000			25131	6635	18150	18286	24606	24606					0.10031486654179389
KILQELPSV	9	Unmodified	_KILQELPSV_					0	0	0		nc|ENSG00000163166|Q96ST2-2|IWS1;nc|ENSG00000163166|Q96ST2-3|IWS1;ENSG00000163166|ENST00000295321|IWS1	nc|ENSG00000163166|Q96ST2-2|IWS1	nc|ENSG00000163166|Q96ST2-2|IWS1	MULTI-SECPEP	A375_MHC_IP_R2	2	513.205322265625	2	513.813325	1025.6121	-0.71727	-0.00036854	0.056622	2.9093E-05	-0.66065	-0.00033945	513.8132579695102	73.615	1.0685	74.35	73.938	75.007	0.7354					55	20	4	0	0	0	0.010788	1	27915	27915		106.94	49.218	1	32894000			25132	6635	18150	18286	24607	24607					0.10031486654179389
KILRLIIIRKL	11	Unmodified	_KILRLIIIRKL_					0	0	0		SLC17A4|p.T365I|1|0.35|ENSG00000146039|chr6:25776701-25776701|C/T|missense_variant	SLC17A4|p.T365I|1|0.35|ENSG00000146039|chr6:25776701-25776701|C/T|missense_variant	SLC17A4|p.T365I|1|0.35|ENSG00000146039|chr6:25776701-25776701|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	689.8930053710938	2	690.002857	1377.99116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.812	1	92.812	92.312	93.312	0								0	0	0	0.16353	1	34113	34113		0.35063	0.35063	1				25133	29168	18151	18287	24608	24608					0.317284706805367
KILSEDPRW	9	Unmodified	_KILSEDPRW_					0	0	0		ENST00000502438.6_1_16:1449373-1453182:-|nuORF;ENST00000503648.1_1_16:1451355-1464692:-|nuORF;nc|ENSG00000059145|Q9H9P5-5|UNKL;nc|ENSG00000059145|Q9H9P5|UNKL;ENSG00000059145|ENST00000389221|UNKL;nc|ENSG00000059145|Q9H9P5-6|UNKL	ENST00000502438.6_1_16:1449373-1453182:-|nuORF	ENST00000502438.6_1_16:1449373-1453182:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	382.27667236328125	3	381.876746	1142.60841	-0.0020172	-7.703E-07	-0.011122	-4.2471E-06	-0.013139	-5.0174E-06	381.8767555565763	46.063	0.30411	46.829	46.704	47.008	0.76518					12	5	3	0	0	0	0.21241	1	17282	17282		37.075	26.924	1	1965000			25134	1299	18152	18288	24609	24609					0.04280816880304883
KILSEDPRW	9	Unmodified	_KILSEDPRW_					0	0	0		ENST00000502438.6_1_16:1449373-1453182:-|nuORF;ENST00000503648.1_1_16:1451355-1464692:-|nuORF;nc|ENSG00000059145|Q9H9P5-5|UNKL;nc|ENSG00000059145|Q9H9P5|UNKL;ENSG00000059145|ENST00000389221|UNKL;nc|ENSG00000059145|Q9H9P5-6|UNKL	ENST00000502438.6_1_16:1449373-1453182:-|nuORF	ENST00000502438.6_1_16:1449373-1453182:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	381.876746	1142.60841	0.18278	6.9799E-05	-0.14503	-5.5383E-05	0.037751	1.4416E-05	381.8767028478301	46.977	0.41159	46.977	46.799	47.211	0	0.074285	-9.1441E-05	NaN	37.075	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1705600			25135	1299	18152	18288							0.04280816880304883
KILSEEPRW	9	Unmodified	_KILSEEPRW_					0	0	0		ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	MULTI-SECPEP	A375_MHC_IP_R1	1	579.7195434570312	2	579.319306	1156.62406	-0.22691	-0.00013145	-0.0034448	-1.9956E-06	-0.23036	-0.00013345	579.3194626453917	47.325	0.41173	47.325	47.055	47.467	0					13	7	2	0	0	0	0.65498	1	16645	16645		21.59	21.59	1	2551100			25136	4414	18153	18289	24610	24610					0.05201103397371298
KILSEEPRW	9	Unmodified	_KILSEEPRW_					0	0	0		ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	MULTI-SECPEP	A375_MHC_IP_R2	2	386.9486999511719	3	386.548629	1156.62406	-0.016075	-6.2139E-06	0.2416	9.3389E-05	0.22552	8.7176E-05	386.5487018394294	46.367	0.4072	47.133	46.957	47.364	0.76519					12	7	2	0	0	0	0.68927	1	17394	17394		22.775	13.799	1	2847100			25137	4414	18153	18289	24611	24611					0.05201103397371298
KILSEEPRW	9	Unmodified	_KILSEEPRW_					0	0	0		ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	MULTI-SECPEP	A375_MHC_IP_R2	2	579.7188720703125	2	579.319306	1156.62406	-0.13575	-7.8643E-05	-0.39041	-0.00022617	-0.52616	-0.00030481	579.3189302477103	46.42	0.40723	47.185	46.906	47.313	0.76519					11	7	2	0	0	0	0.5205	1	17414	17414		45.74	16.658	1	2847200			25138	4414	18153	18289	24612	24612					0.05201103397371298
KILSEERSW	9	Unmodified	_KILSEERSW_					0	0	0		ENST00000374433.6_1_10:44140105-44140240:-|nuORF	ENST00000374433.6_1_10:44140105-44140240:-|nuORF	ENST00000374433.6_1_10:44140105-44140240:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	382.6109924316406	3	383.208384	1146.60332	0.17291	6.6261E-05	-0.39589	-0.00015171	-0.22298	-8.5447E-05	383.2084827148359	36.331	0.30521	36.331	36.133	36.439	0					8	5	2	0	0	0	0.73926	1	12141	12141		8.9762	6.2411	1	1474300			25139	11254	18154	18290	24613	24613					0.03588513017712103
KILSELFTV	9	Unmodified	_KILSELFTV_					0	0	0		ENSG00000092140|ENST00000206595|G2E3;ENST00000549159.1_1_14:31081376-31085737:+|nuORF	ENSG00000092140|ENST00000206595|G2E3	ENSG00000092140|ENST00000206595|G2E3	MULTI-MSMS	A375_MHC_IP_R1	1	525.7156982421875	2	525.3157	1048.61685	-0.30186	-0.00015857	-0.013706	-7.2002E-06	-0.31557	-0.00016577	525.3156006507817	106.43	0.76847	106.43	106.11	106.88	0					47	14	5	0	0	0	0.012843	1	39026	39026		92.653	24.573	1	27745000			25140	1996	18155	18291	24614	24614					0.09448370796940253
KILSELFTV	9	Unmodified	_KILSELFTV_					0	0	0		ENSG00000092140|ENST00000206595|G2E3;ENST00000549159.1_1_14:31081376-31085737:+|nuORF	ENSG00000092140|ENST00000206595|G2E3	ENSG00000092140|ENST00000206595|G2E3	MULTI-SECPEP	A375_MHC_IP_R2	2	525.7149047851562	2	525.3157	1048.61685	-0.45798	-0.00024059	-0.0981	-5.1533E-05	-0.55608	-0.00029212	525.3155923943008	105.38	1.1203	106.14	105.72	106.84	0.76308					52	21	4	0	0	0	0.03109	1	39825	39825		72.968	36.841	1	21247000			25141	1996	18155	18291	24615	24615					0.09448370796940253
KILSHERKL	9	Unmodified	_KILSHERKL_					0	0	0			REV__ENSG00000169223|ENST00000303127|LMAN2	REV__ENSG00000169223|ENST00000303127|LMAN2	MSMS	A375_MHC_IP_R1	1	375.26446533203125	3	375.236385	1122.68733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.508	1	23.508	23.008	24.008	0								0	0	0	0.14792	1	6466	6466		18.721	4.3158	1		+		25142	20918	18156	18292	24616	24616					0.13089088905280732
KILSYERQY	9	Unmodified	_KILSYERQY_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	A375_MHC_IP_R2	2	400.9521484375	3	400.552151	1198.63462	-0.34644	-0.00013877	0.4022	0.0001611	0.055759	2.2335E-05	400.55230924565006	19.908	0.45347	20.519	20.248	20.701	0.61029					14	8	2	0	0	0	0.63327	1	6150	6150		17.443	0.87677	1	1945300			25143	3882	18157	18293	24617	24617					0.04325086051812832
KIMDQVQQA	9	Oxidation (M)	_KIM(Oxidation (M))DQVQQA_		KIM(1)DQVQQA		KIM(80)DQVQQA	0	0	1		nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC;nc|ENSG00000134982|P25054-2|APC	nc|ENSG00000134982|P25054-3|APC	nc|ENSG00000134982|P25054-3|APC	MULTI-MSMS	A375_MHC_IP_R1	1	539.1736450195312	2	538.773874	1075.53319	-0.29646	-0.00015972	-0.66203	-0.00035668	-0.95849	-0.00051641	538.7736404827847	22.309	0.56088	22.309	22.062	22.623	0					17	10	2	0	0	0	0.024574	1	5964	5964		79.596	35.738	1	2559400			25144	4632	18158	18294	24618	24618		240			-0.0015510864241150557
KIMDQVQQA	9	Oxidation (M)	_KIM(Oxidation (M))DQVQQA_		KIM(1)DQVQQA		KIM(66)DQVQQA	0	0	1		nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC;nc|ENSG00000134982|P25054-2|APC	nc|ENSG00000134982|P25054-3|APC	nc|ENSG00000134982|P25054-3|APC	MULTI-MSMS	A375_MHC_IP_R2	2	539.1731567382812	2	538.773874	1075.53319	-1.2004	-0.00064677	-0.20662	-0.00011132	-1.4071	-0.00075809	538.7738135269177	21.895	0.5609	22.514	22.336	22.897	0.61932					16	10	3	0	0	0	0.04447	1	6921	6921		66.457	19.536	1	2453500			25145	4632	18158	18294	24619	24619		240			-0.0015510864241150557
KIMDYSLLL	9	Unmodified	_KIMDYSLLL_					0	0	0		ENSG00000166908|ENST00000354947|PIP4K2C;nc|ENSG00000166908|Q8TBX8-2|PIP4K2C;nc|ENSG00000166908|Q8TBX8-3|PIP4K2C;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C;nc|ENSG00000107242|O14986-3|PIP5K1B;ENSG00000107242|ENST00000265382|PIP5K1B;nc|ENSG00000107242|O14986-2|PIP5K1B	ENSG00000166908|ENST00000354947|PIP4K2C;ENST00000587482.1_1_19:3649915-3700388:-|nuORF	ENSG00000166908|ENST00000354947|PIP4K2C	MULTI-SECPEP	A375_MHC_IP_R1	1	548.709228515625	2	548.309561	1094.60457	-0.33057	-0.00018125	0.96946	0.00053157	0.6389	0.00035031	548.3096612241645	111.71	0.56247	111.71	111.36	111.92	0					22	10	3	0	0	0	0.16764	1	40931	40931		43.772	0	1	3224300			25146	7131;8719	18159	18295	24620	24620					0.06105011062254562
KIMDYSLLL	9	Unmodified	_KIMDYSLLL_					0	0	0		ENSG00000166908|ENST00000354947|PIP4K2C;nc|ENSG00000166908|Q8TBX8-2|PIP4K2C;nc|ENSG00000166908|Q8TBX8-3|PIP4K2C;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C;nc|ENSG00000107242|O14986-3|PIP5K1B;ENSG00000107242|ENST00000265382|PIP5K1B;nc|ENSG00000107242|O14986-2|PIP5K1B	ENSG00000166908|ENST00000354947|PIP4K2C;ENST00000587482.1_1_19:3649915-3700388:-|nuORF	ENSG00000166908|ENST00000354947|PIP4K2C	MULTI-SECPEP	A375_MHC_IP_R2	2	548.708984375	2	548.309561	1094.60457	-0.61713	-0.00033838	0.58458	0.00032053	-0.032547	-1.7846E-05	548.3097587787452	110.77	0.71116	111.51	111.19	111.9	0.73692					26	13	3	0	0	0	0.27742	1	41769	41769		36.506	0	1	3013600			25147	7131;8719	18159	18295	24621	24621					0.06105011062254562
KIMEKIRNV	9	Unmodified	_KIMEKIRNV_					0	0	0		nc|ENSG00000205045|Q6IEE8-2|SLFN12L;nc|ENSG00000154760|Q68D06-2|SLFN13;ENSG00000154760|ENST00000285013|SLFN13;ENSG00000172716|ENST00000685675|SLFN11	nc|ENSG00000205045|Q6IEE8-2|SLFN12L	nc|ENSG00000205045|Q6IEE8-2|SLFN12L	MULTI-MSMS	A375_MHC_IP_R1	1	377.9619140625	3	377.561993	1129.66415	0.37216	0.00014051	-0.46024	-0.00017377	-0.088083	-3.3257E-05	377.5618716673424	25.179	0.55945	25.179	25.002	25.562	0					18	10	3	0	0	0	0.41856	1	7330	7330		23.801	8.0624	1	12213000			25148	14864	18160	18296	24622	24622					0.1045032679628548
KIMEKIRNV	9	Unmodified	_KIMEKIRNV_					0	0	0		nc|ENSG00000205045|Q6IEE8-2|SLFN12L;nc|ENSG00000154760|Q68D06-2|SLFN13;ENSG00000154760|ENST00000285013|SLFN13;ENSG00000172716|ENST00000685675|SLFN11	nc|ENSG00000205045|Q6IEE8-2|SLFN12L	nc|ENSG00000205045|Q6IEE8-2|SLFN12L	MULTI-MSMS	A375_MHC_IP_R2	2	377.9618225097656	3	377.561993	1129.66415	-0.16454	-6.2123E-05	-0.52887	-0.00019968	-0.6934	-0.0002618	377.5618602405961	24.488	0.5067	25.131	24.958	25.465	0.64368					22	9	4	0	0	0	0.59859	2	8083	8083;8168		14.957	7.8554	1	13592000			25149	14864	18160	18296	24623;24624	24623					0.1045032679628548
KIMSVIREW	9	Unmodified	_KIMSVIREW_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	A375_MHC_IP_R1	1	581.7259521484375	2	581.326076	1160.6376	-0.28385	-0.00016501	-0.15734	-9.1467E-05	-0.44119	-0.00025648	581.3259254182353	64.877	0.45892	64.877	64.546	65.005	0					12	8	2	0	0	0	0.62707	1	23516	23516		13.615	6.8917	1	1876100			25150	7877	18161	18297	24625	24625					0.06370637904956311
KIMSVIREW	9	Unmodified	_KIMSVIREW_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	A375_MHC_IP_R2	2	581.726318359375	2	581.326076	1160.6376	-0.2646	-0.00015382	-0.21028	-0.00012224	-0.47489	-0.00027606	581.3258410630176	63.781	0.50748	64.521	64.292	64.8	0.74022					14	9	2	0	0	0	0.4782	1	24216	24216		21.59	6.7519	1	2106100			25151	7877	18161	18297	24626	24626					0.06370637904956311
KIMSVIREW	9	Unmodified	_KIMSVIREW_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-SECPEP	A375_MHC_IP_R2	2	388.2864074707031	3	387.886476	1160.6376	-0.081235	-3.151E-05	0.34995	0.00013574	0.26872	0.00010423	387.88664663767685	63.781	0.40659	64.521	64.292	64.699	0.74022					18	7	3	0	0	0	0.65498	1	24205	24205		25.997	19.367	1	2251100			25152	7877	18161	18297	24627	24627					0.06370637904956311
KIMSVIREW	9	Unmodified	_KIMSVIREW_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	581.326076	1160.6376	-0.2646	-0.00015382	-0.21028	-0.00012224	-0.47489	-0.00027606	581.3258410630176	63.781	0.50748	64.521	64.292	64.8	0.74022	-0.17809	-2.8018E-05	NaN	21.59	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2106100			25153	7877	18161	18297							0.06370637904956311
KINEAIVAV	9	Unmodified	_KINEAIVAV_					0	0	0		ENSG00000087302|ENST00000261700|RTRAF	ENSG00000087302|ENST00000261700|RTRAF	ENSG00000087302|ENST00000261700|RTRAF	MULTI-SECPEP	A375_MHC_IP_R1	1	479.19183349609375	2	478.792392	955.570232	-0.34199	-0.00016374	0.10711	5.1286E-05	-0.23487	-0.00011246	478.79242241969416	54.389	1.0635	54.389	54.113	55.177	0					51	20	4	0	0	0	0.070665	1	19395	19395		69.105	3.8699	1	30582000			25154	1869	18162	18298	24628	24628					0.09066930965650499
KINEAIVAV	9	Unmodified	_KINEAIVAV_					0	0	0		ENSG00000087302|ENST00000261700|RTRAF	ENSG00000087302|ENST00000261700|RTRAF	ENSG00000087302|ENST00000261700|RTRAF	MULTI-SECPEP	A375_MHC_IP_R2	2	479.19232177734375	2	478.792392	955.570232	-1.0731	-0.00051377	0.3342	0.00016001	-0.73886	-0.00035376	478.79248336101824	53.472	1.0232	54.223	53.995	55.018	0.75105					46	19	3	0	0	0	0.070665	1	20152	20152		78.728	13.493	1	33159000			25155	1869	18162	18298	24629	24629					0.09066930965650499
KINEQYGQIL	10	Unmodified	_KINEQYGQIL_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L;nc|ENSG00000177409|Q8IVG5-2|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-SECPEP	A375_MHC_IP_R1	1	603.2089233398438	2	603.32987	1204.64519	-0.25698	-0.00015504	-0.059798	-3.6078E-05	-0.31678	-0.00019112	603.3300065071813	39.314	0.45726	39.314	39.033	39.491	0					14	8	2	0	0	0	0.88038	1	13391	13391		31.268	3.6395	1	3880300			25156	8080	18163	18299	24630	24630					0.05105068706234306
KINEQYGQIL	10	Unmodified	_KINEQYGQIL_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L;nc|ENSG00000177409|Q8IVG5-2|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-SECPEP	A375_MHC_IP_R2	2	603.208740234375	2	603.32987	1204.64519	-0.83385	-0.00050309	-0.36941	-0.00022288	-1.2033	-0.00072596	603.3297121495831	38.361	0.4558	39.136	38.895	39.351	0.77451					14	8	2	0	0	0	0.88038	1	14148	14148		31.268	31.268	1	3652300			25157	8080	18163	18299	24631	24631					0.05105068706234306
KINNEIRSV	9	Unmodified	_KINNEIRSV_					0	0	0		nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENSG00000100225|ENST00000266087|FBXO7;ENST00000492535.1_1_22:32875160-32883832:+|nuORF	nc|ENSG00000100225|Q9Y3I1-3|FBXO7	nc|ENSG00000100225|Q9Y3I1-3|FBXO7	MULTI-SECPEP	A375_MHC_IP_R1	1	536.6422729492188	2	536.809105	1071.60366	-0.97785	-0.00052492	0.11754	6.3098E-05	-0.86031	-0.00046182	536.8091117635392	23.762	0.35562	23.762	23.533	23.889	0					10	6	3	0	0	0	0.656	1	6607	6607		10.899	3.7972	1	8401700			25158	2138	18164	18300	24632	24632					0.07071932737562747
KINPRPAKF	9	Unmodified	_KINPRPAKF_					0	0	0		ENSG00000146247|ENST00000275034|PHIP;PHIP|p.R1505Efs*9|1|0.47|ENSG00000146247|chr6:78946119-78946119|A/-|frameshift_variant;PHIP|p.D644Gfs*18|1|0.37|ENSG00000146247|chr6:78998342-78998343|-/A|frameshift_variant	ENSG00000146247|ENST00000275034|PHIP;PHIP|p.D644Gfs*18|1|0.37|ENSG00000146247|chr6:78998342-78998343|-/A|frameshift_variant	ENSG00000146247|ENST00000275034|PHIP	MULTI-SECPEP	A375_MHC_IP_R1	1	358.2972412109375	3	357.553826	1069.63965	-0.0082899	-2.9641E-06	0.1979	7.0758E-05	0.18961	6.7794E-05	357.55381797114586	19.785	1.1672	19.785	19.42	20.587	0					33	22	3	0	0	0	0.14422	1	4992	4992		27.223	4.487	1	13965000			25159	5612;15168	18165	18301	24633	24633					0.10761434705068496
KINRYTENL	9	Unmodified	_KINRYTENL_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	MULTI-SECPEP	A375_MHC_IP_R1	1	383.57122802734375	3	384.212017	1149.61422	0.30214	0.00011608	-0.23151	-8.8948E-05	0.070631	2.7137E-05	384.21196455426616	37.663	0.71609	37.663	37.402	38.118	0					32	13	4	0	0	0	0.74412	1	12739	12739		6.6304	1.5829	1	5285800	+		25160	18329	18166	18302	24634	24634					0.04539915391978866
KINSIEKRF	9	Unmodified	_KINSIEKRF_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	MULTI-MSMS	A375_MHC_IP_R1	1	379.29254150390625	3	378.892507	1133.65569	0.069654	2.6391E-05	-0.7006	-0.00026545	-0.63095	-0.00023906	378.8924851120365	23.762	0.50828	23.762	23.533	24.042	0					14	9	2	0	0	0	0.058715	1	6604	6604		60.899	5.6507	1	9048600			25161	6733	18167	18303	24635	24635					0.09421096151322672
KINTESSLW	9	Unmodified	_KINTESSLW_					0	0	0		ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	MULTI-SECPEP	A375_MHC_IP_R2	2	539.681640625	2	539.282389	1076.55022	-1.1031	-0.0005949	0.12702	6.8501E-05	-0.9761	-0.00052639	539.2823500889709	56.173	0.8169	56.923	56.54	57.356	0.75015					31	15	3	0	0	0	0.34746	1	21183	21183		45.7	10.768	1	12760000			25162	1036	18168	18304	24636	24636					0.01501135235048423
KIPDMSVQLW	10	Unmodified	_KIPDMSVQLW_					0	0	0		ENSG00000129933|ENST00000262815|MAU2;nc|ENSG00000129933|Q9Y6X3-2|MAU2;nc|ENSG00000129933|Q9Y6X3-3|MAU2;ENST00000587709.5_1_19:19459550-19466588:+|nuORF;ENST00000589947.7_1_19:19459550-19465349:+|nuORF;ENST00000499453.2_1_19:19464952-19466588:+|nuORF;ENST00000262816.11_1_19:19463093-19466588:+|nuORF	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-SECPEP	A375_MHC_IP_R2	2	609.2232055664062	2	608.823366	1215.63218	-0.48312	-0.00029414	0.10311	6.2773E-05	-0.38002	-0.00023136	608.8231669058566	106.37	0.76418	107.13	106.73	107.5	0.75977					23	14	2	0	0	0	0.81654	1	40214	40214		20.581	8.0494	1	1156900			25163	4214	18169	18305	24637	24637					0.03298914322499513
KIPDVDHV	8	Unmodified	_KIPDVDHV_					0	0	0			REV__ENST00000441433.1_1_7:26961755-26962307:+|nuORF	REV__ENST00000441433.1_1_7:26961755-26962307:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	461.6576232910156	2	461.753267	921.491981	-0.42622	-0.00019681	0.23069	0.00010652	-0.19552	-9.0283E-05	461.75309672672137	52.997	0.60712	52.997	52.694	53.301	0					13	11	2	0	0	0	0.972	1	18929	18929		0.52476	0	1	952210	+		25164	24811	18170	18306	24638	24638					0.028094983804294316
KIPILVIKKVL	11	Unmodified	_KIPILVIKKVL_					0	0	0		STEAP1|p.N115K|1|0.1|ENSG00000164647|chr7:90161065-90161065|C/A|missense_variant	STEAP1|p.N115K|1|0.1|ENSG00000164647|chr7:90161065-90161065|C/A|missense_variant	STEAP1|p.N115K|1|0.1|ENSG00000164647|chr7:90161065-90161065|C/A|missense_variant	MSMS	A375_MHC_IP_R2	2	421.9749450683594	3	421.975732	1262.90537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.007	1	22.626	22.126	23.126	0.61932								0	0	0	0.16358	1	6966	6966		0.08335	0.08335	1				25165	29260	18171	18307	24639	24639					0.284428857750072
KIPPVSPSI	9	Unmodified	_KIPPVSPSI_					0	0	0		ARRDC3|p.Y394Ffs*4|1|0.2|ENSG00000113369|chr5:91373692-91373693|AA/-|frameshift_variant;ENSG00000113369|ENST00000265138|ARRDC3	ARRDC3|p.Y394Ffs*4|1|0.2|ENSG00000113369|chr5:91373692-91373693|AA/-|frameshift_variant	ARRDC3|p.Y394Ffs*4|1|0.2|ENSG00000113369|chr5:91373692-91373693|AA/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	469.4753723144531	2	469.289485	936.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.28	1	57.28	56.78	57.78	0								0	0	0	0.028312	1	20543	20543		69.105	21.356	1				25166	182	18172	18308	24640	24640					0.09359832453992567
KIPTPIVGV	9	Unmodified	_KIPTPIVGV_					0	0	0		ENSG00000090060|ENST00000216277|PAPOLA	ENSG00000090060|ENST00000216277|PAPOLA	ENSG00000090060|ENST00000216277|PAPOLA	MULTI-SECPEP	A375_MHC_IP_R1	1	462.6997375488281	2	462.299853	922.585153	-0.075973	-3.5122E-05	-0.10468	-4.8395E-05	-0.18066	-8.3517E-05	462.2997705289842	71.374	0.55826	71.374	71.057	71.615	0					26	10	3	0	0	0	0.011145	1	25887	25887		131.27	81.335	1	15164000			25167	1943	18173	18309	24641	24641					0.12076422833672495
KIPTPIVGV	9	Unmodified	_KIPTPIVGV_					0	0	0		ENSG00000090060|ENST00000216277|PAPOLA	ENSG00000090060|ENST00000216277|PAPOLA	ENSG00000090060|ENST00000216277|PAPOLA	MULTI-SECPEP	A375_MHC_IP_R2	2	462.6993408203125	2	462.299853	922.585153	-0.47034	-0.00021744	-0.076241	-3.5246E-05	-0.54659	-0.00025269	462.29974499026616	70.491	0.65932	71.225	70.844	71.503	0.73421					31	12	3	0	0	0	0.011145	1	26652	26652		118.89	80.921	1	14791000			25168	1943	18173	18309	24642	24642					0.12076422833672495
KIPVVERKILD	11	Unmodified	_KIPVVERKILD_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MSMS	A375_MHC_IP_R2	2	655.4315185546875	2	655.413737	1308.81292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.61	1	96.361	95.861	96.861	0.75045								0	0	0	0.16273	1	36315	36315		4.5289	1.5336	1				25169	1565	18174	18310	24643	24643					0.17086755970854028
KIQDYQQF	8	Unmodified	_KIQDYQQF_					0	0	0		DDX60L|p.T1688Pfs*13|1|0.44|ENSG00000181381|chr4:168358206-168358206|T/-|frameshift_variant;ENSG00000181381|ENST00000682922|DDX60L;DDX60L|p.E845Dfs*21|1|0.41|ENSG00000181381|chr4:168419367-168419377|TTTCAAAACAT/-|frameshift_variant;nc|ENSG00000181381|Q5H9U9-2|DDX60L	DDX60L|p.T1688Pfs*13|1|0.44|ENSG00000181381|chr4:168358206-168358206|T/-|frameshift_variant	DDX60L|p.T1688Pfs*13|1|0.44|ENSG00000181381|chr4:168358206-168358206|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	535.69775390625	2	535.269281	1068.52401	-0.67547	-0.00036156	-1.6786	-0.00089852	-2.3541	-0.0012601	535.2683213266907	57.729	0.91699	57.729	56.956	57.873	0					32	17	2	0	0	0	0.77515	1	20457	20457		12.532	0	1	2914400			25170	731	18175	18311	24644	24644					-0.00751133936455517
KIQEILTQV	9	Unmodified	_KIQEILTQV_					0	0	0		ENSG00000136231|ENST00000258729|IGF2BP3;ENST00000454907.1_1_6:167114584-167114857:-|nuORF;nc|ENSG00000136231|O00425-2|IGF2BP3	ENSG00000136231|ENST00000258729|IGF2BP3	ENSG00000136231|ENST00000258729|IGF2BP3	MULTI-SECPEP	A375_MHC_IP_R1	1	536.6768188476562	2	536.324057	1070.63356	-0.95004	-0.00050953	0.47122	0.00025273	-0.47882	-0.0002568	536.324307036104	66.758	2.4919	66.758	66.377	68.869	0					94	48	5	0	0	0	0.011066	1	24146	24146		137.42	30.484	1	160790000			25171	4766	18176	18312	24645	24645					0.10106871682887686
KIQEILTQV	9	Unmodified	_KIQEILTQV_					0	0	0		ENSG00000136231|ENST00000258729|IGF2BP3;ENST00000454907.1_1_6:167114584-167114857:-|nuORF;nc|ENSG00000136231|O00425-2|IGF2BP3	ENSG00000136231|ENST00000258729|IGF2BP3	ENSG00000136231|ENST00000258729|IGF2BP3	MULTI-SECPEP	A375_MHC_IP_R2	2	536.6764526367188	2	536.324057	1070.63356	-1.0622	-0.00056967	0.11825	6.3421E-05	-0.94393	-0.00050625	536.3241004784679	65.762	2.4926	66.5	66.172	68.665	0.73811					92	48	5	0	0	0	0.011066	1	24939	24939		125.53	32.876	1	179550000			25172	4766	18176	18312	24646	24646					0.10106871682887686
KIQELAHEL	9	Unmodified	_KIQELAHEL_					0	0	0		nc|ENSG00000142655|O75381-2|PEX14;ENSG00000142655|ENST00000356607|PEX14	nc|ENSG00000142655|O75381-2|PEX14	nc|ENSG00000142655|O75381-2|PEX14	MULTI-SECPEP	A375_MHC_IP_R1	1	541.2057495117188	2	540.806031	1079.59751	-0.77247	-0.00041775	0.50642	0.00027388	-0.26604	-0.00014388	540.8060394824261	39.997	0.35797	39.997	39.845	40.203	0					13	6	3	0	0	0	0.53098	1	13739	13739		27.223	10.11	1	3678400			25173	5322	18177	18313	24647	24647					0.060894145060501614
KIQELAHEL	9	Unmodified	_KIQELAHEL_					0	0	0		nc|ENSG00000142655|O75381-2|PEX14;ENSG00000142655|ENST00000356607|PEX14	nc|ENSG00000142655|O75381-2|PEX14	nc|ENSG00000142655|O75381-2|PEX14	MULTI-SECPEP	A375_MHC_IP_R2	2	540.1813354492188	2	540.806031	1079.59751	-1.0255	-0.00055457	-0.31117	-0.00016828	-1.3366	-0.00072285	540.8059113209448	39.106	0.3585	39.881	39.658	40.016	0.77451					16	6	4	0	0	0	0.63622	1	14390	14390		14.405	0	1	3849600			25174	5322	18177	18313	24648	24648					0.060894145060501614
KIQELKFQCIV	11	Unmodified	_KIQELKFQCIV_					0	0	0		ENSG00000157680|ENST00000614521|DGKI;nc|ENSG00000157680|O75912|DGKI	ENSG00000157680|ENST00000614521|DGKI	ENSG00000157680|ENST00000614521|DGKI	MULTI-MSMS	A375_MHC_IP_R1	1	450.6597900390625	3	450.260091	1347.75844	-0.38567	-0.00017365	0.52441	0.00023612	0.13874	6.247E-05	450.2602104537709	131.73	1.718	131.73	131.13	132.84	0					79	33	4	0	0	0	0.73494	1	50941	50941		1.9275	0.18523	1	15936000			25175	6260	18178	18314	24649	24649					0.09847420827782116
KIQIQLQGL	9	Unmodified	_KIQIQLQGL_					0	0	0			REV__ENSG00000144821|ENST00000693548|MYH15	REV__ENSG00000144821|ENST00000693548|MYH15	MULTI-SECPEP	A375_MHC_IP_R1	1	520.1714477539062	2	520.826766	1039.63898	-0.4196	-0.00021854	-0.47068	-0.00024514	-0.89028	-0.00046368	520.8266645071358	97.335	0.25241	97.335	97.187	97.44	0					6	4	2	0	0	0	0.78798	1	35798	35798		3.9444	2.2918	1	581360	+		25176	19448	18179	18315	24650	24650					0.12074595265357857
KIQIQLQGL	9	Unmodified	_KIQIQLQGL_					0	0	0			REV__ENSG00000144821|ENST00000693548|MYH15	REV__ENSG00000144821|ENST00000693548|MYH15	MULTI-MATCH	A375_MHC_IP_R2	2		2	520.826766	1039.63898	-0.66265	-0.00034513	0.63784	0.0003322	-0.024815	-1.2924E-05	520.8268909950732	96.283	0.35602	97.034	96.906	97.262	0.75045	-0.15058	0.00092826	NaN	3.9444	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	627390	+		25177	19448	18179	18315							0.12074595265357857
KIQPDTIIQVW	11	Unmodified	_KIQPDTIIQVW_					0	0	0		ENSG00000213614|ENST00000268097|HEXA;ENST00000566672.5_1_15:72638574-72647950:-|nuORF	ENSG00000213614|ENST00000268097|HEXA	ENSG00000213614|ENST00000268097|HEXA	MULTI-MSMS	A375_MHC_IP_R2	2	671.2816772460938	2	670.88227	1339.74999	-0.74118	-0.00049724	-0.62966	-0.00042243	-1.3708	-0.00091967	670.8816188243304	103.04	0.71078	103.81	103.33	104.04	0.76428					36	13	4	0	0	0	0.00023355	1	38997	38997		128.57	88.623	1	11071000			25178	9574	18180	18316	24651	24651					0.09370190182789884
KIQPVARLGY	10	Unmodified	_KIQPVARLGY_					0	0	0		tr|U7SJS9|U7SJS9_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02076PE=4SV=1	tr|U7SJS9|U7SJS9_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02076PE=4SV=1	tr|U7SJS9|U7SJS9_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02076PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	382.6329040527344	3	382.232752	1143.67643	0.20003	7.6458E-05	-0.10728	-4.1006E-05	0.092749	3.5452E-05	382.2326304856164	25.588	0.45681	25.588	25.46	25.917	0					23	8	3	0	0	0	0.71364	1	7500	7500		6.1918	0.78914	1	12101000			25179	29465	18181	18317	24652	24652					0.11033686530981868
KIRCLLKKKYR	11	Unmodified	_KIRCLLKKKYR_					0	0	0		ENST00000367450.7_1_1:192992066-192992111:-|nuORF	ENST00000367450.7_1_1:192992066-192992111:-|nuORF	ENST00000367450.7_1_1:192992066-192992111:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	363.38677978515625	4	362.986612	1447.91734	0.20822	7.5581E-05	0.28092	0.00010197	0.48914	0.00017755	362.98663173609555	52.258	0.81385	52.258	51.829	52.643	0					59	15	6	0	0	0	0.73925	1	18506	18506		0.08335	0.08335	1	10306000			25180	11090	18182	18318	24653	24653					0.2113017924655196
KIRCLLKKKYR	11	Unmodified	_KIRCLLKKKYR_					0	0	0		ENST00000367450.7_1_1:192992066-192992111:-|nuORF	ENST00000367450.7_1_1:192992066-192992111:-|nuORF	ENST00000367450.7_1_1:192992066-192992111:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	363.38671875	4	362.986612	1447.91734	0.19703	7.152E-05	-0.15158	-5.502E-05	0.045456	1.65E-05	363.2372447998513	55.369	0.66275	55.369	55.075	55.738	0					37	12	4	0	0	0	0.73925	1	19799	19799		0.08335	0.08335	1	9121100			25181	11090	18182	18318	24654	24654					0.2113017924655196
KIRHARSF	8	Unmodified	_KIRHARSF_					0	0	0			REV__ENST00000380050.7_1_7:90747491-90836600:+|nuORF	REV__ENST00000380050.7_1_7:90747491-90836600:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	508.1573486328125	2	507.801417	1013.58828	-0.86307	-0.00043827	-1.1998	-0.00060925	-2.0628	-0.0010475	507.8007464818617	28.027	0.40652	28.705	28.452	28.858	0.67857					14	7	3	0	0	0	0.972	1	9555	9555		4.3292	2.9997	1	2289400	+		25182	24209	18183	18319	24655	24655					0.08203110731028573
KIRLETKKP	9	Unmodified	_KIRLETKKP_					0	0	0			REV__NXPE2|p.E79K|1|0.29|ENSG00000204361|chr11:114698147-114698147|G/A|missense_variant	REV__NXPE2|p.E79K|1|0.29|ENSG00000204361|chr11:114698147-114698147|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	371.6136474609375	3	371.576519	1111.70773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.147	1	31.865	31.365	32.365	0.71857								0	0	0	0.15486	1	10998	10998		1.1933	0.12188	1		+		25183	27635	18184	18320	24656	24656					0.15634259565081265
KIRNQYREDW	10	Unmodified	_KIRNQYREDW_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-SECPEP	A375_MHC_IP_R1	1	469.6209716796875	3	469.909109	1406.7055	-0.49277	-0.00023155	0.13956	6.5581E-05	-0.3532	-0.00016597	469.9091254456266	24.444	0.40171	24.444	24.296	24.698	0					13	7	2	0	0	0	0.93232	1	6915	6915		10.899	4.2755	1	3911900			25184	9362	18185	18321	24657	24657					0.018411790893196667
KIRVNRHDRRK	11	Unmodified	_KIRVNRHDRRK_					0	0	0			REV__ENSG00000214026|ENST00000397298|MRPL23	REV__ENSG00000214026|ENST00000397298|MRPL23	MSMS	A375_MHC_IP_R1	1	739.8493041992188	2	739.450374	1476.8862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.75	1	143.75	143.25	144.25	0								0	0	0	0.16354	1	55142	55142		0.30703	0.03801	1		+		25185	22643	18186	18322	24658	24658					0.1668274225667119
KIRVPEIFK	9	Unmodified	_KIRVPEIFK_					0	0	0		tr|U7SUU5|U7SUU5_FUSNUPhosphoribosylformylglycinamidinecyclo-ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purMPE=3SV=1	tr|U7SUU5|U7SUU5_FUSNUPhosphoribosylformylglycinamidinecyclo-ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purMPE=3SV=1	tr|U7SUU5|U7SUU5_FUSNUPhosphoribosylformylglycinamidinecyclo-ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purMPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	565.211669921875	2	565.358234	1128.70191	-0.9695	-0.00054812	0.46128	0.00026079	-0.50822	-0.00028733	565.3584348209224	37.274	0.35488	38.045	37.816	38.171	0.7709					14	6	3	0	0	0	0.73141	1	13539	13539		6.7232	6.1984	1	4851600			25186	29777	18187	18323	24659	24659					0.14271161053420656
KISDLFILRE	10	Unmodified	_KISDLFILRE_					0	0	0			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	A375_MHC_IP_R1	1	412.3113708496094	3	411.911568	1232.71287	0.17916	7.3799E-05	-0.36908	-0.00015203	-0.18992	-7.8229E-05	411.91142180146255	46.22	0.3537	46.22	45.992	46.345	0					17	6	3	0	0	0	0.36253	1	16191	16191		36.395	3.4972	1	7943900	+		25187	18434	18188	18324	24660	24660					0.10582518637011162
KISDLFILRE	10	Unmodified	_KISDLFILRE_					0	0	0			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	A375_MHC_IP_R2	2	412.3114929199219	3	411.911568	1232.71287	-0.06407	-2.6391E-05	-0.3389	-0.0001396	-0.40297	-0.00016599	411.9114586309103	45.207	0.45635	45.972	45.694	46.15	0.76519					19	8	3	0	0	0	0.13001	1	16877	16877		57.204	14.369	1	7881900	+		25188	18434	18188	18324	24661	24661					0.10582518637011162
KISDLFILRE	10	Unmodified	_KISDLFILRE_					0	0	0			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	411.911568	1232.71287	0.17916	7.3799E-05	-0.36908	-0.00015203	-0.18992	-7.8229E-05	411.91142180146255	46.22	0.3537	46.22	45.992	46.345	0	0.12382	-1.5868E-05	NaN	57.204	17	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7943900	+		25189	18434	18188	18324							0.10582518637011162
KISDLFILRE	10	Unmodified	_KISDLFILRE_					0	0	0			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	411.911568	1232.71287	-0.06407	-2.6391E-05	-0.3389	-0.0001396	-0.40297	-0.00016599	411.9114586309103	45.207	0.45635	45.972	45.694	46.15	0.76519	-0.12382	2.143E-05	NaN	57.204	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7881900	+		25190	18434	18188	18324							0.10582518637011162
KISESLRTV	9	Unmodified	_KISESLRTV_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-4|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	MULTI-SECPEP	A375_MHC_IP_R1	1	516.19287109375	2	516.806031	1031.59751	-0.64126	-0.00033141	0.30707	0.0001587	-0.33419	-0.00017271	516.8061774159626	27.559	0.6069	27.559	27.229	27.836	0					16	11	2	0	0	0	0.74169	1	8394	8394		16.149	16.149	1	3703600			25191	5986	18189	18325	24662	24662					0.08297414506046152
KISHTGHKP	9	Unmodified	_KISHTGHKP_					0	0	0		ENST00000435033.1_1_19:12491157-12492084:-|nuORF	ENST00000435033.1_1_19:12491157-12492084:-|nuORF	ENST00000435033.1_1_19:12491157-12492084:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	502.2006530761719	2	502.785433	1003.55631	-0.030253	-1.5211E-05	-0.61837	-0.00031091	-0.64863	-0.00032612	502.785283836428	38.815	0.3045	38.815	38.628	38.933	0					8	5	2	0	0	0	0.29981	1	13181	13181		30.637	0	1	1869000			25192	11905	18190	18326	24663	24663					0.05467698257234588
KISNIIKQF	9	Unmodified	_KISNIIKQF_					0	0	0		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-MSMS	A375_MHC_IP_R1	1	546.2342529296875	2	545.834591	1089.65463	-0.49992	-0.00027287	0.031787	1.735E-05	-0.46813	-0.00025552	545.8347033260837	53.48	4.7751	53.48	53.199	57.974	0					245	93	6	0	0	0	0.00075334	1	19027	19027		233.47	103.7	1	928890000			25193	1784	18191	18327	24664	24664					0.11338881782421595
KISNIIKQF	9	Unmodified	_KISNIIKQF_					0	0	0		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-MSMS	A375_MHC_IP_R1	1	364.62530517578125	3	364.225486	1089.65463	0.24137	8.7912E-05	0.022745	8.2842E-06	0.26411	9.6197E-05	364.22541625842166	53.428	2.5906	53.428	53.199	55.79	0					149	50	5	0	0	0	0.009815	3	19029	19029;19244;19707		114.5	36.436	1	305550000			25194	1784	18191	18327	24665;24666;24667	24665					0.11338881782421595
KISNIIKQF	9	Unmodified	_KISNIIKQF_					0	0	0		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-MSMS	A375_MHC_IP_R2	2	364.6253356933594	3	364.225486	1089.65463	-0.46339	-0.00016878	0.083235	3.0316E-05	-0.38015	-0.00013846	364.2254580666357	52.407	3.6089	53.159	52.882	56.491	0.75225					145	70	6	0	0	0	0.0099672	4	19727	19727;19892;19961;20134		121.5	29.302	1	412670000			25195	1784	18191	18327	24668;24669;24670;24671	24668					0.11338881782421595
KISNIIKQF	9	Unmodified	_KISNIIKQF_					0	0	0		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-SECPEP	A375_MHC_IP_R2	2	546.2341918945312	2	545.834591	1089.65463	-1.2378	-0.00067566	0.29886	0.00016313	-0.93899	-0.00051253	545.8348940211263	52.461	3.8648	53.213	52.882	56.747	0.75225					206	75	6	0	0	0	1.9532E-08	1	19940	19940		203.64	96.452	1	994970000			25196	1784	18191	18327	24672	24672					0.11338881782421595
KISNIIKQF	9	Unmodified	_KISNIIKQF_					0	0	0		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-SECPEP	A375_MHC_IP_R2	2	546.2337036132812	2	545.834591	1089.65463	-1.0924	-0.00059627	0.18363	0.00010023	-0.90878	-0.00049604	545.8346376408653	56.314	1.8846	57.064	56.186	58.071	0.75015					61	36	2	0	0	0	0.0575	1	21062	21062		76.825	21.322	1	4149200			25197	1784	18191	18327	24673	24673					0.11338881782421595
KISPVTFSV	9	Unmodified	_KISPVTFSV_					0	0	0		ENST00000480991.1_1_1:1597223-1601267:-|nuORF;ENSG00000189339|ENST00000617444|SLC35E2B	ENST00000480991.1_1_1:1597223-1601267:-|nuORF	ENST00000480991.1_1_1:1597223-1601267:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	489.6863098144531	2	489.286943	976.559333	-0.27761	-0.00013583	0.064775	3.1694E-05	-0.21284	-0.00010414	489.287004488577	73.275	0.70994	73.275	72.98	73.69	0					25	13	3	0	0	0	0.40377	1	26701	26701		28.495	4.4739	1	1619700			25198	8980	18192	18328	24674	24674					0.07011528591374372
KISSTLYQA	9	Unmodified	_KISSTLYQA_					0	0	0		ENST00000490672.1_1_1:155141918-155142388:-|nuORF;ENST00000463527.5_1_1:155141918-155144917:-|nuORF;ENST00000471891.5_1_1:155141918-155145146:-|nuORF;ENSG00000163463|ENST00000295682|KRTCAP2;nc|ENSG00000163463|Q8N6L1-2|KRTCAP2;ENST00000482246.5_1_1:155141918-155145739:-|nuORF;ENST00000497317.5_1_1:155141918-155145314:-|nuORF	ENST00000490672.1_1_1:155141918-155142388:-|nuORF;ENST00000497317.5_1_1:155141918-155145314:-|nuORF	ENST00000490672.1_1_1:155141918-155142388:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	506.1789855957031	2	505.779482	1009.54441	-0.44562	-0.00022539	-0.19564	-9.895E-05	-0.64126	-0.00032433	505.77938450055507	36.21	0.40558	36.21	36.033	36.439	0					13	7	2	0	0	0	0.34746	1	12115	12115		38.176	11.907	1	4085400			25199	6666;12741	18193	18329	24675	24675					0.04002036723386482
KISSTLYQA	9	Unmodified	_KISSTLYQA_					0	0	0		ENST00000490672.1_1_1:155141918-155142388:-|nuORF;ENST00000463527.5_1_1:155141918-155144917:-|nuORF;ENST00000471891.5_1_1:155141918-155145146:-|nuORF;ENSG00000163463|ENST00000295682|KRTCAP2;nc|ENSG00000163463|Q8N6L1-2|KRTCAP2;ENST00000482246.5_1_1:155141918-155145739:-|nuORF;ENST00000497317.5_1_1:155141918-155145314:-|nuORF	ENST00000490672.1_1_1:155141918-155142388:-|nuORF;ENST00000497317.5_1_1:155141918-155145314:-|nuORF	ENST00000490672.1_1_1:155141918-155142388:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	506.1788330078125	2	505.779482	1009.54441	-0.9511	-0.00048105	-0.059815	-3.0253E-05	-1.0109	-0.0005113	505.7793674212242	35.395	0.45484	36.158	35.98	36.435	0.76338					15	8	2	0	0	0	0.5212	1	12862	12862		26.268	2.2476	1	3627200			25200	6666;12741	18193	18329	24676	24676					0.04002036723386482
KISTITPQI	9	Unmodified	_KISTITPQI_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	501.20538330078125	2	500.8055	999.596446	-0.28538	-0.00014292	0.17386	8.7068E-05	-0.11153	-5.5853E-05	500.8055458725482	56.779	0.81392	56.779	56.295	57.109	0					25	15	2	0	0	0	0.14554	1	20291	20291		57.249	1.0721	1	8673400			25201	876	18194	18330	24677	24677					0.09663200137140393
KISTITPQI	9	Unmodified	_KISTITPQI_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	501.2047424316406	2	500.8055	999.596446	-0.72322	-0.00036219	0.16187	8.1066E-05	-0.56135	-0.00028113	500.8054724358852	55.828	0.86568	56.578	56.134	57	0.75015					39	16	4	0	0	0	0.048303	1	21046	21046		74.2	5.0947	1	8005100			25202	876	18194	18330	24678	24678					0.09663200137140393
KISVIVETV	9	Unmodified	_KISVIVETV_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-SECPEP	A375_MHC_IP_R2	2	494.6803894042969	2	494.307875	986.601197	-0.67809	-0.00033518	0.041814	2.0669E-05	-0.63627	-0.00031451	494.30782788469935	65.758	0.91696	66.496	66.172	67.089	0.73811					43	17	4	0	0	0	0.011357	1	24938	24938		114.2	52.844	1	18210000			25203	6741	18195	18331	24679	24679					0.10736084279903935
KITDIVRQL	9	Unmodified	_KITDIVRQL_					0	0	0			REV__ENST00000579128.1_1_18:657682-669175:+|nuORF	REV__ENST00000579128.1_1_18:657682-669175:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	362.9606628417969	3	362.560758	1084.66044	0.30753	0.0001115	-0.51112	-0.00018531	-0.20359	-7.3814E-05	362.56055751369297	54.389	0.45387	54.389	54.113	54.567	0					15	8	2	0	0	0	0.44183	1	19438	19438		22.658	1.0679	1	2385800	+		25204	21424	18196	18332	24680	24680					0.12149980294088891
KITDSTCYS	9	Unmodified	_KITDSTCYS_					0	0	0		ENST00000492662.1_1_3:33414533-33415354:+|nuORF;ENST00000432809.5_1_3:33339416-33427097:+|nuORF;nc|ENSG00000153558|Q9UKC9-2|FBXL2;ENSG00000153558|ENST00000484457|FBXL2;ENST00000451636.5_1_3:33400471-33427097:+|nuORF	ENST00000492662.1_1_3:33414533-33415354:+|nuORF	ENST00000492662.1_1_3:33414533-33415354:+|nuORF	MSMS	A375_MHC_IP_R1	1	509.22100830078125	2	509.231507	1016.44846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.521	1	41.521	41.021	42.021	0								0	0	0	0.15486	1	14340	14340		10.074	0.72649	1				25205	6035	18197	18333	24681	24681					-0.059104791790332456
KITDVIIGF	9	Unmodified	_KITDVIIGF_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	A375_MHC_IP_R1	1	503.703369140625	2	503.302593	1004.59063	-0.15387	-7.7444E-05	2.9538	0.0014867	2.7999	0.0014092	503.3043627327813	107.06	0.97081	107.06	106.57	107.54	0					27	18	3	0	0	0	0.14858	1	39295	39295		41.956	1.9982	1	1862300			25206	2162	18198	18334	24682	24682					0.08852101625473097
KITEYLERV	9	Unmodified	_KITEYLERV_					0	0	0		ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-MSMS	A375_MHC_IP_R1	1	384.62054443359375	3	384.220401	1149.63937	0.43312	0.00016641	2.0892	0.0008027	2.5223	0.00096911	384.22165683699336	51.582	0.86359	51.582	51.119	51.982	0					19	16	2	0	0	0	0.6629	1	18352	18352		10.315	0	1	2537000			25207	4324	18199	18335	24683	24683					0.07053970194556314
KITEYLERV	9	Unmodified	_KITEYLERV_					0	0	0		ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-SECPEP	A375_MHC_IP_R1	1	576.2267456054688	2	575.826963	1149.63937	-0.024796	-1.4278E-05	0.044015	2.5345E-05	0.019219	1.1067E-05	575.8270162657336	51.551	0.50702	51.551	51.322	51.829	0					24	9	4	0	0	0	0.011083	1	18289	18289		146.68	39.58	1	15305000			25208	4324	18199	18335	24684	24684					0.07053970194556314
KITEYLERV	9	Unmodified	_KITEYLERV_					0	0	0		ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-SECPEP	A375_MHC_IP_R2	2	576.226806640625	2	575.826963	1149.63937	-0.29592	-0.0001704	-0.032275	-1.8585E-05	-0.3282	-0.00018898	575.826978073891	50.712	0.55529	51.466	51.209	51.765	0.75406					23	10	3	0	0	0	0.14871	1	19044	19044		74.772	17.523	1	13539000			25209	4324	18199	18335	24685	24685					0.07053970194556314
KITEYLERV	9	Unmodified	_KITEYLERV_					0	0	0		ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	384.220401	1149.63937	-0.22235	-8.5431E-05	1.8992	0.00072971	1.6769	0.00064428	384.2214726925363	50.733	0.65656	51.488	51.209	51.866	0.75406	-0.047297	-4.5442E-05	NaN	10.315	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3558600			25210	4324	18199	18335							0.07053970194556314
KITKVNLYK	9	Unmodified	_KITKVNLYK_					0	0	0		tr|U7T2K1|U7T2K1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00479PE=4SV=1	tr|U7T2K1|U7T2K1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00479PE=4SV=1	tr|U7T2K1|U7T2K1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00479PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	369.9692687988281	3	369.569253	1105.68593	0.48767	0.00018023	-0.16055	-5.9334E-05	0.32712	0.0001209	369.5691648757073	22.95	0.4015	22.95	22.723	23.125	0					14	7	2	0	0	0	0.70411	1	6249	6249		6.6304	2.1015	1	2407100			25211	29936	18200	18336	24686	24686					0.13731454816502264
KITNLKERK	9	Unmodified	_KITNLKERK_					0	0	0		nc|ENSG00000112701|Q9GZR1-2|SENP6;ENSG00000112701|ENST00000447266|SENP6	nc|ENSG00000112701|Q9GZR1-2|SENP6	nc|ENSG00000112701|Q9GZR1-2|SENP6	MULTI-MSMS	A375_MHC_IP_R1	1	377.6275329589844	3	377.239907	1128.69789	0.12435	4.691E-05	-0.19433	-7.3309E-05	-0.069979	-2.6399E-05	377.23987774884864	26.998	0.653	26.998	26.728	27.381	0					28	12	4	0	0	0	0.62591	1	8052	8052		13.615	2.8154	1	23133000			25212	3105	18201	18337	24687	24687					0.13869071559702206
KITYPKRPK	9	Unmodified	_KITYPKRPK_					0	0	0			REV__ENST00000482838.1_1_6:32947542-32948492:+|nuORF	REV__ENST00000482838.1_1_6:32947542-32948492:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	377.9365539550781	3	377.572998	1129.69716	0.54104	0.00020428	-0.91026	-0.00034369	-0.36923	-0.00013941	377.5725835695789	43.11	0.96497	43.11	42.537	43.502	0					30	18	2	0	0	0	0.6421	1	14964	14964		12.175	3.7304	1	1612100	+		25213	22500	18202	18338	24688	24688					0.13750276910650427
KITYPKRPK	9	Unmodified	_KITYPKRPK_					0	0	0			REV__ENST00000482838.1_1_6:32947542-32948492:+|nuORF	REV__ENST00000482838.1_1_6:32947542-32948492:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	377.9728088378906	3	377.572998	1129.69716	0.56185	0.00021214	-0.96447	-0.00036416	-0.40262	-0.00015202	377.57282571160306	44.321	0.61639	44.321	44.01	44.626	0					26	11	3	0	0	0	0.6894	1	15439	15439		7.9454	0.33645	1	3999500	+		25214	22500	18202	18338	24689	24689					0.13750276910650427
KITYPKRPK	9	Unmodified	_KITYPKRPK_					0	0	0			REV__ENST00000482838.1_1_6:32947542-32948492:+|nuORF	REV__ENST00000482838.1_1_6:32947542-32948492:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	377.9728088378906	3	377.572998	1129.69716	0.27994	0.0001057	-0.389	-0.00014688	-0.10906	-4.1177E-05	377.5728824053689	43.129	0.65847	43.901	43.421	44.079	0.7724					18	12	2	0	0	0	0.53943	1	16092	16092		17.863	8.3192	1	3655400	+		25215	22500	18202	18338	24690	24690					0.13750276910650427
KITYPKRPK	9	Unmodified	_KITYPKRPK_					0	0	0			REV__ENST00000482838.1_1_6:32947542-32948492:+|nuORF	REV__ENST00000482838.1_1_6:32947542-32948492:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	377.572998	1129.69716	0.56185	0.00021214	-0.96447	-0.00036416	-0.40262	-0.00015202	377.57282571160306	44.321	0.61639	44.321	44.01	44.626	0	0	0	NaN	7.9454	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3999500	+		25216	22500	18202	18338							0.13750276910650427
KIVDAPSVTN	10	Unmodified	_KIVDAPSVTN_					0	0	0			REV__tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1	REV__tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1	MSMS	A375_MHC_IP_R2	2	522.216064453125	2	522.290214	1042.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.461	1	50.218	49.718	50.718	0.75737								0	0	0	0.15038	1	18586	18586		17.113	3.605	1		+		25217	28655	18203	18339	24691	24691					0.04629421752088092
KIVDFSYSV	9	Unmodified	_KIVDFSYSV_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B;ENST00000453867.6_3_15:40509736-40545453:+|nuORF	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-MSMS	A375_MHC_IP_R1	1	530.1832885742188	2	529.281857	1056.54916	-0.63226	-0.00033464	0.60759	0.00032159	-0.024668	-1.3056E-05	529.2818397122973	76.544	0.76111	76.544	76.117	76.878	0					34	14	4	0	0	0	0.02114	1	27899	27899		82.529	21.172	1	8345700			25218	6220	18204	18340	24692	24692					0.023149208661379816
KIVDFSYSV	9	Unmodified	_KIVDFSYSV_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B;ENST00000453867.6_3_15:40509736-40545453:+|nuORF	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-MSMS	A375_MHC_IP_R2	2	530.182861328125	2	529.281857	1056.54916	-0.56167	-0.00029728	-0.24913	-0.00013186	-0.81081	-0.00042914	529.281622503335	75.8	0.61137	76.541	76.181	76.792	0.74052					26	11	3	0	0	0	0.073067	1	28748	28748		55.503	11.644	1	8042400			25219	6220	18204	18340	24693	24693					0.023149208661379816
KIVHYRQMF	9	Unmodified	_KIVHYRQMF_					0	0	0		ENSG00000172171|ENST00000581216|TEFM;ENST00000580840.1_2_17:29226189-29226666:-|nuORF	ENSG00000172171|ENST00000581216|TEFM	ENSG00000172171|ENST00000581216|TEFM	MULTI-MSMS	A375_MHC_IP_R1	1	408.2840270996094	3	407.890221	1220.64883	-0.28891	-0.00011785	1.4508	0.00059178	1.1619	0.00047393	407.89066541362155	19.577	0.61049	19.577	19.318	19.928	0					29	11	4	0	0	0	0.58047	1	4783	4783		10.8	2.3552	1	5337800			25220	7684	18205	18341	24694	24694					0.04733459999079059
KIVKQLQRL	9	Unmodified	_KIVKQLQRL_					0	0	0		ENST00000520635.5_1_8:82626199-82627143:-|nuORF	ENST00000520635.5_1_8:82626199-82627143:-|nuORF	ENST00000520635.5_1_8:82626199-82627143:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	376.32049560546875	3	375.920397	1124.73936	0.78422	0.0002948	-0.77055	-0.00028966	0.01367	5.1387E-06	375.9201265472224	48.755	0.50723	48.755	48.526	49.033	0					14	9	2	0	0	0	0.32899	1	17246	17246		20.415	2.0414	1	2448200			25221	12998	18206	18342	24695	24695					0.18198252319007224
KIVNWKQRLQI	11	Unmodified	_KIVNWKQRLQI_					0	0	0		GLYATL1|p.E93K|1|0.35|ENSG00000166840|chr11:58954860-58954860|G/A|missense_variant	GLYATL1|p.E93K|1|0.35|ENSG00000166840|chr11:58954860-58954860|G/A|missense_variant	GLYATL1|p.E93K|1|0.35|ENSG00000166840|chr11:58954860-58954860|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	476.36090087890625	3	475.961144	1424.8616	-0.73146	-0.00034815	0.070156	3.3392E-05	-0.66131	-0.00031476	475.96126721984876	84.414	2.5377	84.414	84.041	86.578	0					173	49	6	0	0	0	0.73472	2	30861	30861;31507		4.4062	3.0765	1	347220000			25222	14054	18207	18343	24696;24697	24696					0.16616669330596778
KIVNWKQRLQI	11	Unmodified	_KIVNWKQRLQI_					0	0	0		GLYATL1|p.E93K|1|0.35|ENSG00000166840|chr11:58954860-58954860|G/A|missense_variant	GLYATL1|p.E93K|1|0.35|ENSG00000166840|chr11:58954860-58954860|G/A|missense_variant	GLYATL1|p.E93K|1|0.35|ENSG00000166840|chr11:58954860-58954860|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	476.6946716308594	3	475.961144	1424.8616	-0.66304	-0.00031558	-0.24143	-0.00011491	-0.90446	-0.00043049	475.96102298226174	87.018	0.8632	87.018	86.477	87.34	0					34	16	3	0	0	0	0.73807	1	31897	31897		1.2148	0	1	1814500			25223	14054	18207	18343	24698	24698					0.16616669330596778
KIVNWKQRLQI	11	Unmodified	_KIVNWKQRLQI_					0	0	0		GLYATL1|p.E93K|1|0.35|ENSG00000166840|chr11:58954860-58954860|G/A|missense_variant	GLYATL1|p.E93K|1|0.35|ENSG00000166840|chr11:58954860-58954860|G/A|missense_variant	GLYATL1|p.E93K|1|0.35|ENSG00000166840|chr11:58954860-58954860|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	476.3609924316406	3	475.961144	1424.8616	-0.48999	-0.00023322	-0.46297	-0.00022035	-0.95296	-0.00045357	475.9610052932653	83.386	3.3101	84.125	83.745	87.055	0.73962					192	64	6	0	0	0	0.73439	2	31852	31636;31852		4.7159	0.59929	1	328400000			25224	14054	18207	18343	24699;24700	24700					0.16616669330596778
KIVYVARNL	9	Unmodified	_KIVYVARNL_					0	0	0		SULT1C3|p.P141L|1|0.23|ENSG00000196228|chr2:108255594-108255594|C/T|missense_variant	SULT1C3|p.P141L|1|0.23|ENSG00000196228|chr2:108255594-108255594|C/T|missense_variant	SULT1C3|p.P141L|1|0.23|ENSG00000196228|chr2:108255594-108255594|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	360.2767333984375	3	359.225598	1074.65496	-0.44005	-0.00015808	0.12049	4.3284E-05	-0.31955	-0.00011479	359.22557307449597	35.295	0.80927	36.058	35.778	36.587	0.76338					41	15	4	0	0	0	0.50892	1	12856	12856		19.362	2.7961	1	33690000			25225	29268	18208	18344	24701	24701					0.12062301502260198
KIWAFLDVSF	10	Unmodified	_KIWAFLDVSF_					0	0	0		ENSG00000177294|ENST00000321535|FBXO39	ENSG00000177294|ENST00000321535|FBXO39	ENSG00000177294|ENST00000321535|FBXO39	MULTI-SECPEP	A375_MHC_IP_R1	1	409.3056335449219	3	409.225375	1224.6543	0.022435	9.181E-06	-1.3607	-0.00055683	-1.3383	-0.00054765	409.2251933028038	51.315	0.45843	51.315	50.966	51.424	0					12	8	2	0	0	0	0.91932	1	18175	18175		7.9454	0	1	693250			25226	8073	18209	18345	24702	24702					0.05095462062558909
KIWDLKERTNV	11	Unmodified	_KIWDLKERTNV_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19;ENST00000539960.1_1_11:60665249-60666641:-|nuORF	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-MSMS	A375_MHC_IP_R2	2	468.33294677734375	3	467.933143	1400.7776	-0.80541	-0.00037688	0.15892	7.4364E-05	-0.64649	-0.00030251	467.93320304663877	41.368	0.50634	42.142	41.895	42.401	0.77451					23	9	4	0	0	0	0.21414	1	15346	15346		53.367	35.027	1	5586700			25227	2921	18210	18346	24703	24703					0.0932409344302414
KIWDPVHRV	9	Unmodified	_KIWDPVHRV_					0	0	0		nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2	nc|ENSG00000134900|P29144|TPP2	nc|ENSG00000134900|P29144|TPP2	MULTI-MSMS	A375_MHC_IP_R1	1	575.7297973632812	2	575.330008	1148.64546	-0.056361	-3.2426E-05	-0.2436	-0.00014015	-0.29996	-0.00017257	575.3299418137562	37.306	0.35744	37.306	37.096	37.454	0					10	6	2	0	0	0	0.2989	1	12594	12594		30.703	11.446	1	2731700			25228	4622	18211	18347	24704	24704					0.07708533216737123
KIWDPVHRV	9	Unmodified	_KIWDPVHRV_					0	0	0		nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2	nc|ENSG00000134900|P29144|TPP2	nc|ENSG00000134900|P29144|TPP2	MULTI-MSMS	A375_MHC_IP_R2	2	384.28912353515625	3	383.889097	1148.64546	-0.25931	-9.9545E-05	-1.9698	-0.0007562	-2.2292	-0.00085575	383.8882291226956	36.254	1.5737	37.025	35.836	37.41	0.7709					65	30	3	0	0	0	0.0098926	2	13180	13180;13300		97.741	45.473	1	38538000			25229	4622	18211	18347	24705;24706	24705					0.07708533216737123
KIWDPVHRV	9	Unmodified	_KIWDPVHRV_					0	0	0		nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2	nc|ENSG00000134900|P29144|TPP2	nc|ENSG00000134900|P29144|TPP2	MULTI-SECPEP	A375_MHC_IP_R2	2	575.7293701171875	2	575.330008	1148.64546	-0.32566	-0.00018736	-0.83031	-0.0004777	-1.156	-0.00066507	575.3295397952894	36.192	0.30733	36.963	36.85	37.157	0.7709					10	5	2	0	0	0	0.75475	1	13225	13225		16.566	5.742	1	2107700			25230	4622	18211	18347	24707	24707					0.07708533216737123
KIWFKNRRMKW	11	Unmodified	_KIWFKNRRMKW_					0	0	0		HOXA7|p.Q179K|1|0.39|ENSG00000122592|chr7:27155067-27155067|G/T|missense_variant	HOXA7|p.Q179K|1|0.39|ENSG00000122592|chr7:27155067-27155067|G/T|missense_variant	HOXA7|p.Q179K|1|0.39|ENSG00000122592|chr7:27155067-27155067|G/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	531.70849609375	3	531.638007	1591.89219	-0.639	-0.00033972	0.60935	0.00032395	-0.02965	-1.5763E-05	531.6382288227838	50.536	0.35809	50.536	50.254	50.613	0					10	6	2	0	0	0	0.73891	1	17862	17862		0.40827	0.335	1	2427500			25231	14130	18212	18348	24708	24708					0.11992124443963803
KIWFKNRRMKW	11	Unmodified	_KIWFKNRRMKW_					0	0	0		HOXA7|p.Q179K|1|0.39|ENSG00000122592|chr7:27155067-27155067|G/T|missense_variant	HOXA7|p.Q179K|1|0.39|ENSG00000122592|chr7:27155067-27155067|G/T|missense_variant	HOXA7|p.Q179K|1|0.39|ENSG00000122592|chr7:27155067-27155067|G/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	531.7085571289062	3	531.638007	1591.89219	-0.93764	-0.00049848	0.89221	0.00047433	-0.045428	-2.4151E-05	531.6384497579708	49.739	0.3047	50.494	50.294	50.599	0.75406					9	5	2	0	0	0	1.0012	1	18677	18677		0.073264	0	1	2613200			25232	14130	18212	18348	24709	24709					0.11992124443963803
KIWLKEEDA	9	Unmodified	_KIWLKEEDA_					0	0	0		tr|U7SEZ5|U7SEZ5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02316PE=4SV=1	tr|U7SEZ5|U7SEZ5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02316PE=4SV=1	tr|U7SEZ5|U7SEZ5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02316PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	566.705078125	2	566.305864	1130.59717	-0.53575	-0.0003034	0.024658	1.3964E-05	-0.51109	-0.00028943	566.3058335247972	31.091	0.50622	31.091	30.806	31.312	0					19	9	3	0	0	0	0.60917	1	9932	9932		13.906	0	1	2726100			25233	29388	18213	18349	24710	24710					0.03709994786186144
KIWTSEHVF	9	Unmodified	_KIWTSEHVF_					0	0	0		ENST00000466051.1_1_20:57613469-57617839:-|nuORF;nc|ENSG00000101166|Q9Y3B1-2|PRELID3B;ENSG00000101166|ENST00000355937|PRELID3B	ENST00000466051.1_1_20:57613469-57617839:-|nuORF	ENST00000466051.1_1_20:57613469-57617839:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	574.1741943359375	2	573.800749	1145.58694	-0.0053454	-3.0672E-06	-0.17325	-9.941E-05	-0.17859	-0.00010248	573.8003485306273	54.058	0.40385	54.058	53.809	54.213	0					17	7	3	0	0	0	0.13244	1	19270	19270		47.749	38.366	1	3185100			25234	2261	18214	18350	24711	24711					0.01997431851600595
KIWTSEHVF	9	Unmodified	_KIWTSEHVF_					0	0	0		ENST00000466051.1_1_20:57613469-57617839:-|nuORF;nc|ENSG00000101166|Q9Y3B1-2|PRELID3B;ENSG00000101166|ENST00000355937|PRELID3B	ENST00000466051.1_1_20:57613469-57617839:-|nuORF	ENST00000466051.1_1_20:57613469-57617839:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	574.168701171875	2	573.800749	1145.58694	-0.80484	-0.00046182	-0.54402	-0.00031216	-1.3489	-0.00077398	573.8003871805308	53.111	0.35748	53.862	53.688	54.046	0.75105					15	6	3	0	0	0	0.10535	1	20025	20025		63.961	33.324	1	4210400			25235	2261	18214	18350	24712	24712					0.01997431851600595
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	A375_MHC_IP_R1	1	532.7106323242188	2	532.784764	1063.55498	-0.54695	-0.00029141	1.4778	0.00078737	0.93089	0.00049596	532.7847554083146	43.488	1.8843	43.488	43.146	45.03	0					109	36	8	0	0	0	0.023053	1	15131	15131		96.936	25.802	1	234220000			25236	3779	18215	18351	24713	24713					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	A375_MHC_IP_R2	2	532.7103271484375	2	532.784764	1063.55498	-0.65038	-0.00034651	1.279	0.00068145	0.62865	0.00033493	532.7846869724012	42.673	1.6198	43.445	43.116	44.735	0.7724					84	31	6	0	0	0	0.015196	1	15898	15898		107.1	32.9	1	299480000			25237	3779	18215	18351	24714	24714					0.025740193778119647
KIYFLLVRIK	10	Unmodified	_KIYFLLVRIK_					0	0	0		ENSG00000151502|ENST00000281187|VPS26B;ENST00000527586.1_1_11:134109936-134113358:+|nuORF;nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A	ENSG00000151502|ENST00000281187|VPS26B;nc|ENSG00000122958|O75436-2|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	MULTI-SECPEP	A375_MHC_IP_R1	1	1293.2432861328125	1	1292.84529	1291.83801	-0.29025	-0.00037525	0.29081	0.00037597	0.00055751	7.2078E-07	1292.8455031286862	134.76	0.61166	134.76	134.62	135.23	0					13	11	2	0	0	0	0.95034	1	52085	52085		0	0	1	4547100			25238	5912;3816	18216	18352	24715	24715					0.20376855564086327
KIYLNKIYL	9	Unmodified	_KIYLNKIYL_					0	0	0		ENST00000591074.1_1_17:58153002-58156275:-|nuORF	ENST00000591074.1_1_17:58153002-58156275:-|nuORF	ENST00000591074.1_1_17:58153002-58156275:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	584.7286376953125	2	584.360442	1166.70633	-0.25109	-0.00014673	-0.1185	-6.9246E-05	-0.36959	-0.00021597	584.3603305061805	73.714	0.3039	73.714	73.539	73.843	0					8	5	2	0	0	0	0.61758	1	26858	26858		29.082	5.061	1	1005700			25239	13792	18217	18353	24716	24716					0.12964625476342917
KIYLPYLHEW	10	Unmodified	_KIYLPYLHEW_					0	0	0		ENSG00000074319|ENST00000251968|TSG101;ENST00000543087.5_1_11:18512432-18536353:-|nuORF;ENST00000545247.6_1_11:18505612-18548363:-|nuORF	ENSG00000074319|ENST00000251968|TSG101;ENST00000545247.6_1_11:18505612-18548363:-|nuORF	ENSG00000074319|ENST00000251968|TSG101	MULTI-MSMS	A375_MHC_IP_R1	1	681.7656860351562	2	681.366256	1360.71796	-0.79197	-0.00053962	-0.16465	-0.00011219	-0.95662	-0.00065181	681.8677055586503	94.702	0.66377	94.702	94.446	95.109	0					17	12	2	0	0	0	0.11994	1	34813	34813		59.368	48.569	1	1858500			25240	1581;13322	18218	18354	24717	24717					0.05202822499654758
KIYNFFII	8	Unmodified	_KIYNFFII_					0	0	0		tr|U7SU95|U7SU95_FUSNUDUF4846domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01150PE=4SV=1	tr|U7SU95|U7SU95_FUSNUDUF4846domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01150PE=4SV=1	tr|U7SU95|U7SU95_FUSNUDUF4846domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01150PE=4SV=1	MSMS	A375_MHC_IP_R2	2	353.2659912109375	3	353.207544	1056.6008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.333	1	53.086	52.586	53.586	0.75225								0	0	0	0.16876	1	19725	19725		7.2892	0	1				25241	29748	18219	18355	24718	24718					0.07476709350726196
KIYPGHGRRY	10	Unmodified	_KIYPGHGRRY_					0	0	0		ENSG00000114391|ENST00000394077|RPL24;ENST00000470961.1_1_3:101405187-101405544:-|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	A375_MHC_IP_R1	1	416.6322326660156	3	416.231634	1245.67307	0.069282	2.8837E-05	-0.43201	-0.00017981	-0.36272	-0.00015098	416.2314109837441	19.243	0.65612	19.243	19.221	19.877	0					38	14	3	0	0	0	0.14143	3	4643	4643;4821;4864		55.235	25.797	1	1026399999.9999999			25242	3217	18220	18356	24719;24720;24721	24719					0.06006436476991439
KIYPGHGRRY	10	Unmodified	_KIYPGHGRRY_					0	0	0		ENSG00000114391|ENST00000394077|RPL24;ENST00000470961.1_1_3:101405187-101405544:-|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	A375_MHC_IP_R2	2	416.6318054199219	3	416.231634	1245.67307	-0.29096	-0.00012111	0.28033	0.00011668	-0.010629	-4.4241E-06	416.2316966940048	18.844	0.46136	19.447	19.423	19.884	0.60308					19	8	3	0	0	0	0.26783	1	5632	5632		42.312	19.297	1	290210000			25243	3217	18220	18356	24722	24722					0.06006436476991439
KIYVVGGYSW	10	Unmodified	_KIYVVGGYSW_					0	0	0		ENSG00000198642|ENST00000359039|KLHL9;nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13	ENSG00000198642|ENST00000359039|KLHL9	ENSG00000198642|ENST00000359039|KLHL9	MULTI-SECPEP	A375_MHC_IP_R1	1	586.7110595703125	2	586.310949	1170.60735	-0.29004	-0.00017005	0.12222	7.166E-05	-0.16782	-9.8392E-05	586.3110511655126	87.687	0.40752	87.687	87.441	87.848	0					16	7	3	0	0	0	0.37302	1	32180	32180		55.503	47.347	1	1938900			25244	9293	18221	18357	24723	24723					0.028866025114439253
KKAKKAKKKVK	11	Unmodified	_KKAKKAKKKVK_					0	0	0			REV__BRD1|p.R427K|1|0.28|ENSG00000100425|chr22:49823038-49823038|C/T|missense_variant	REV__BRD1|p.R427K|1|0.28|ENSG00000100425|chr22:49823038-49823038|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	643.0865478515625	2	642.963732	1283.91291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.055	1	69.055	68.555	69.555	0								0	0	0	0.16354	1	25052	25052		0.30703	0.30703	1		+		25245	15524	18222	18358	24724	24724					0.282310380952822
KKALEEKRRQI	11	Unmodified	_KKALEEKRRQI_					0	0	0		CNGA3|p.G602R|1|0.38|ENSG00000144191|chr2:98396974-98396974|G/A|missense_variant	CNGA3|p.G602R|1|0.38|ENSG00000144191|chr2:98396974-98396974|G/A|missense_variant	CNGA3|p.G602R|1|0.38|ENSG00000144191|chr2:98396974-98396974|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	699.9949951171875	2	699.930617	1397.84668	-0.51657	-0.00036156	0.11252	7.8753E-05	-0.40405	-0.00028281	699.930486554839	149.2	2.4803	149.22	147.53	150.01	0.018707					294	106	4	0	0	0	0.73902	1	58146	58146		0.30703	0	1	2721100			25246	545	18223	18359	24725	24725					0.16367177462598193
KKALIIKLRRG	11	Unmodified	_KKALIIKLRRG_					0	0	0		ENSG00000173276|ENST00000310826|ZBTB21	ENSG00000173276|ENST00000310826|ZBTB21	ENSG00000173276|ENST00000310826|ZBTB21	MSMS	A375_MHC_IP_R2	2	648.342529296875	2	648.453531	1294.89251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.33	1	108.09	107.59	108.59	0.75436								0	0	0	0.1636	1	40550	40550		0	0	1				25247	7785	18224	18360	24726	24726					0.2568586743545893
KKAPAKRGL	9	Unmodified	_KKAPAKRGL_					0	0	0		JARID2|p.E477K|1|0.23|ENSG00000008083|chr6:15496654-15496654|G/A|missense_variant	JARID2|p.E477K|1|0.23|ENSG00000008083|chr6:15496654-15496654|G/A|missense_variant	JARID2|p.E477K|1|0.23|ENSG00000008083|chr6:15496654-15496654|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	484.9022521972656	2	484.821818	967.629084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.085	1	84.825	84.325	85.325	0.73962								0	0	0	0.15486	1	31962	31962		10.074	1.4806	1				25248	14186	18225	18361	24727	24727					0.14397452050650372
KKAVWTRA	8	Unmodified	_KKAVWTRA_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MSMS	A375_MHC_IP_R1	1	480.7079772949219	2	480.292894	958.571235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.64	1	142.64	142.14	143.14	0								0	0	0	0.16876	1	54732	54732		8.5933	3.3626	1				25249	8904	18226	18362	24728	24728					0.0902919012522716
KKDEKRKWRKR	11	Unmodified	_KKDEKRKWRKR_					0	0	0			REV__nc|ENSG00000118322|O94823-3|ATP10B	REV__nc|ENSG00000118322|O94823-3|ATP10B	MULTI-MSMS	A375_MHC_IP_R2	2	519.985595703125	3	519.986464	1556.93756	-0.69881	-0.00036337	2.5035	0.0013018	1.8047	0.00093843	520.3218784313208	82.191	0.15277	82.934	82.839	82.992	0.74294					4	2	2	0	0	0	0.73925	1	31199	31199		0.08335	0.08335	1	486320	+		25250	27193	18227	18363	24729	24729					0.18137066230724486
KKDLGTLGGRI	11	Unmodified	_KKDLGTLGGRI_					0	0	0		nc|ENSG00000100100|Q96FE7-4|PIK3IP1	nc|ENSG00000100100|Q96FE7-4|PIK3IP1	nc|ENSG00000100100|Q96FE7-4|PIK3IP1	MSMS	A375_MHC_IP_R2	2	386.61737060546875	3	386.571545	1156.69281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.73	1	68.466	67.966	68.966	0.73631								0	0	0	0.16232	1	25666	25666		3.3557	0.036083	1				25251	14504	18228	18364	24730	24730					0.12072767697100062
KKDRGVLKI	9	Unmodified	_KKDRGVLKI_					0	0	0		ENSG00000096060|ENST00000357266|FKBP5;nc|ENSG00000096060|Q13451-2|FKBP5	ENSG00000096060|ENST00000357266|FKBP5	ENSG00000096060|ENST00000357266|FKBP5	MULTI-SECPEP	A375_MHC_IP_R1	1	529.2471313476562	2	528.848033	1055.68151	-0.89874	-0.0004753	-0.069317	-3.6658E-05	-0.96806	-0.00051196	528.8476969252797	147.39	0.22568	147.39	147.28	147.51	0					58	24	3	0	0	0	0.81779	1	56316	56316		0.52476	0.12405	1	317080			25252	2052	18229	18365	24731	24731					0.1558999039361879
KKDRGVLKI	9	Unmodified	_KKDRGVLKI_					0	0	0		ENSG00000096060|ENST00000357266|FKBP5;nc|ENSG00000096060|Q13451-2|FKBP5	ENSG00000096060|ENST00000357266|FKBP5	ENSG00000096060|ENST00000357266|FKBP5	MULTI-MSMS	A375_MHC_IP_R2	2	529.2476806640625	2	528.848033	1055.68151	-0.35632	-0.00018844	-0.057307	-3.0307E-05	-0.41363	-0.00021875	528.8477354472027	147.39	0.21341	147.41	147.33	147.54	0.019913					56	26	3	0	0	0	0.7724	1	57308	57308		0.52476	0.12405	1	289120			25253	2052	18229	18365	24732	24732					0.1558999039361879
KKDRHMVRF	9	Unmodified	_KKDRHMVRF_					0	0	0		CR2|p.E422K|2|0.24|ENSG00000117322|chr1:207470778-207470778|G/A|missense_variant	CR2|p.E422K|2|0.24|ENSG00000117322|chr1:207470778-207470778|G/A|missense_variant	CR2|p.E422K|2|0.24|ENSG00000117322|chr1:207470778-207470778|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	406.5910339355469	3	406.229237	1215.66588	-0.25332	-0.0001029	0.59151	0.00024029	0.33819	0.00013738	406.22942973144393	18.905	0.48264	19.508	19.452	19.935	0.60308					12	9	2	0	0	0	0.69317	1	5769	5769		7.609	1.4171	1	3753500			25254	659	18230	18366	24733	24733					0.06667380604903883
KKEAEAHMHM	10	Unmodified	_KKEAEAHMHM_					0	0	0		ENSG00000137473|ENST00000325106|TTC29;nc|ENSG00000137473|Q8NA56-2|TTC29	ENSG00000137473|ENST00000325106|TTC29	ENSG00000137473|ENST00000325106|TTC29	MSMS	A375_MHC_IP_R1	1	606.2556762695312	2	606.286625	1210.5587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.44	1	117.44	116.94	117.94	0								0	0	0	0.15353	1	43148	43148		9.3831	1.7742	1				25255	4885	18231	18367	24734	24734					-0.038159573916345835
KKEALHKGPAA	11	Unmodified	_KKEALHKGPAA_					0	0	0			REV__ENSG00000124766|ENST00000244745|SOX4	REV__ENSG00000124766|ENST00000244745|SOX4	MULTI-MSMS	A375_MHC_IP_R2	2	384.2862854003906	3	383.89614	1148.66659	-0.37459	-0.0001438	0.33069	0.00012695	-0.043901	-1.6853E-05	383.89633340633634	33.264	1.7264	34.016	33.127	34.853	0.75225					96	33	6	0	0	0	0.72964	1	12160	12160		9.2438	0.79947	1	249350000	+		25256	18322	18232	18368	24735	24735					0.09820498525618859
KKEEKKTF	8	Unmodified	_KKEEKKTF_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87;REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-MSMS	A375_MHC_IP_R2	2	520.3922729492188	2	519.303124	1036.5917	-0.85728	-0.00044519	0.10089	5.2392E-05	-0.75639	-0.0003928	519.3031313719041	37.865	0.30852	38.64	38.483	38.791	0.77451					13	5	3	0	0	0	0.77717	1	13892	13892		5.2307	0.90143	1	3777300			25257	7640;22535	18233	18369	24736	24736					0.07486315994378856
KKEIHIKKHK	10	Unmodified	_KKEIHIKKHK_					0	0	0			REV__nc|ENSG00000198521|P17038-2|ZNF43	REV__nc|ENSG00000198521|P17038-2|ZNF43	MSMS	A375_MHC_IP_R2	2	430.308837890625	3	430.278585	1287.81392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.42	1	132.61	132.11	133.11	0.18953								0	0	0	0.15629	1	52090	52090		0.13989	0	1		+		25258	22377	18234	18370	24737	24737					0.18153015130405947
KKEILAKHK	9	Unmodified	_KKEILAKHK_					0	0	0		ENST00000358951.6_1_1:220387230-220406181:-|nuORF	ENST00000358951.6_1_1:220387230-220406181:-|nuORF	ENST00000358951.6_1_1:220387230-220406181:-|nuORF	MSMS	A375_MHC_IP_R1	1	365.60479736328125	3	365.572998	1093.69716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.874	1	29.874	29.374	30.374	0								0	0	0	0.11128	1	9420	9420		38.615	7.3464	1				25259	11004	18235	18371	24738	24738					0.15406276910653105
KKEILAKHK	9	Unmodified	_KKEILAKHK_					0	0	0		ENST00000358951.6_1_1:220387230-220406181:-|nuORF	ENST00000358951.6_1_1:220387230-220406181:-|nuORF	ENST00000358951.6_1_1:220387230-220406181:-|nuORF	MSMS	A375_MHC_IP_R2	2	365.6045837402344	3	365.572998	1093.69716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.111	1	29.81	29.31	30.31	0.69872								0	0	0	0.084351	1	10136	10136		45.74	20.749	1				25260	11004	18235	18371	24739	24739					0.15406276910653105
KKEKKKKKKKI	11	Unmodified	_KKEKKKKKKKI_					0	0	0			REV__nc|ENSG00000110274|Q9UPV0-2|CEP164	REV__nc|ENSG00000110274|Q9UPV0-2|CEP164	MSMS	A375_MHC_IP_R2	2	707.413818359375	2	707.503221	1412.99189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.47	1	111.21	110.71	111.71	0.73692								0	0	0	0.16354	1	41671	41671		0.30703	0	1		+		25261	17622	18236	18372	24740	24740					0.30191265329563066
KKEKYRKL	8	Unmodified	_KKEKYRKL_					0	0	0		tr|U7SV10|U7SV10_FUSNUMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferaseTrmFOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmFOPE=3SV=1	tr|U7SV10|U7SV10_FUSNUMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferaseTrmFOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmFOPE=3SV=1	tr|U7SV10|U7SV10_FUSNUMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferaseTrmFOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmFOPE=3SV=1	MSMS	A375_MHC_IP_R2	2	364.94476318359375	3	364.901114	1091.68151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.598	1	29.296	28.796	29.796	0.69872								0	0	0	0.16876	1	9894	9894		18.146	5.9057	1				25262	29782	18237	18373	24741	24741					0.13933990393616114
KKELDRFGV	9	Unmodified	_KKELDRFGV_					0	0	0		SLX4|p.P1585L|1|0.26|ENSG00000188827|chr16:3583496-3583496|G/A|missense_variant;nc|ENSG00000188827|Q8IY92-2|SLX4;ENSG00000188827|ENST00000294008|SLX4	SLX4|p.P1585L|1|0.26|ENSG00000188827|chr16:3583496-3583496|G/A|missense_variant;nc|ENSG00000188827|Q8IY92-2|SLX4	nc|ENSG00000188827|Q8IY92-2|SLX4	MULTI-SECPEP	A375_MHC_IP_R2	2	365.2693786621094	3	364.545108	1090.61349	-0.08743	-3.1872E-05	0.53739	0.0001959	0.44996	0.00016403	364.87956586577053	40.28	1.0161	41.055	40.727	41.743	0.77451					27	19	2	0	0	0	0.71341	1	15016	15016		8.9762	0	1	1188700			25263	29209;8941	18238	18374	24742	24742					0.07181120742961866
KKELPKELI	9	Unmodified	_KKELPKELI_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	A375_MHC_IP_R2	2	366.6325988769531	3	366.569142	1096.6856	-0.20503	-7.5159E-05	0.40543	0.00014862	0.2004	7.3459E-05	366.90436622973135	24.42	0.81121	25.063	24.653	25.465	0.64368					31	15	3	0	0	0	0.6421	1	8033	8033		12.175	0.65687	1	10726000	+		25264	17416	18239	18375	24743	24743					0.14112035096673026
KKELPLEHFV	10	Unmodified	_KKELPLEHFV_					0	0	0			REV__ENST00000427635.6_1_10:69682690-69747802:-|nuORF	REV__ENST00000427635.6_1_10:69682690-69747802:-|nuORF	MSMS	A375_MHC_IP_R1	1	413.95947265625	3	413.908046	1238.70231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.543	1	67.543	67.043	68.043	0								0	0	0	0.15411	1	24477	24477		7.4771	1.6089	1		+		25265	19640	18240	18376	24744	24744					0.09250535982619112
KKENTKKEK	9	Unmodified	_KKENTKKEK_					0	0	0		SERPINB4|p.E197K|1|0.4|ENSG00000206073|chr18:63639657-63639657|C/T|missense_variant	SERPINB4|p.E197K|1|0.4|ENSG00000206073|chr18:63639657-63639657|C/T|missense_variant	SERPINB4|p.E197K|1|0.4|ENSG00000206073|chr18:63639657-63639657|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	377.63128662109375	3	378.227667	1131.66117	0.3234	0.00012232	-0.33819	-0.00012791	-0.014795	-5.5959E-06	378.2275570538618	28.357	0.40393	28.357	28.188	28.592	0					14	7	3	0	0	0	0.7905	1	8731	8731		5.4027	0	1	3853700			25266	29139	18241	18377	24745	24745					0.10060774943144679
KKEPGVVPRK	10	Unmodified	_KKEPGVVPRK_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	A375_MHC_IP_R2	2	380.3081970214844	3	379.908269	1136.70298	0.081999	3.1152E-05	-0.11687	-4.44E-05	-0.034871	-1.3248E-05	380.2424739341561	45.979	0.50562	46.744	46.503	47.008	0.76519					16	9	3	0	0	0	0.71076	1	17218	17218		7.4771	1.2852	1	2085000			25267	7983	18242	18378	24746	24746					0.1400937542232441
KKEPILEV	8	Unmodified	_KKEPILEV_					0	0	0			REV__ENST00000494722.1_1_7:2314657-2354074:-|nuORF	REV__ENST00000494722.1_1_7:2314657-2354074:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	478.6940612792969	2	478.294768	954.574983	-0.465	-0.00022241	-0.2496	-0.00011938	-0.7146	-0.00034179	478.2946335692121	75.287	0.65533	75.287	74.958	75.614	0					27	12	3	0	0	0	0.57209	1	27405	27405		46.021	0	1	6291300	+		25268	17436	18243	18379	24747	24747					0.09587815108432096
KKEPILEV	8	Unmodified	_KKEPILEV_					0	0	0			REV__ENST00000494722.1_1_7:2314657-2354074:-|nuORF	REV__ENST00000494722.1_1_7:2314657-2354074:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	478.69451904296875	2	478.294768	954.574983	-0.57171	-0.00027345	0.23495	0.00011238	-0.33676	-0.00016107	478.2947942644781	74.297	0.65897	75.035	74.757	75.416	0.73752					18	12	2	0	0	0	0.60242	1	28186	28186		54.774	0	1	6462300	+		25269	17436	18243	18379	24748	24748					0.09587815108432096
KKEPILEV	8	Unmodified	_KKEPILEV_					0	0	0			REV__ENST00000494722.1_1_7:2314657-2354074:-|nuORF	REV__ENST00000494722.1_1_7:2314657-2354074:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	478.294768	954.574983	-0.465	-0.00022241	-0.2496	-0.00011938	-0.7146	-0.00034179	478.2946335692121	75.287	0.65533	75.287	74.958	75.614	0	0.1261	-0.00026455	NaN	46.021	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6291300	+		25270	17436	18243	18379							0.09587815108432096
KKFKFFKF	8	Unmodified	_KKFKFFKF_					0	0	0		SH2D3C|p.P760Tfs*5|1|0.4|ENSG00000095370|chr9:127739811-127739812|-/T|frameshift_variant;ENSG00000095370|ENST00000314830|SH2D3C	SH2D3C|p.P760Tfs*5|1|0.4|ENSG00000095370|chr9:127739811-127739812|-/T|frameshift_variant	SH2D3C|p.P760Tfs*5|1|0.4|ENSG00000095370|chr9:127739811-127739812|-/T|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	373.92431640625	3	373.895301	1118.66407	0.09428	3.5251E-05	-2.0516	-0.00076708	-1.9573	-0.00073182	373.89448655411866	24.219	0.2026	24.863	24.755	24.958	0.64368					5	3	2	0	0	0	0.77762	1	7936	7936		3.5965	0	1	509130			25271	2041	18244	18380	24749	24749					0.10948694858598174
KKFKIVILILI	11	Unmodified	_KKFKIVILILI_					0	0	0		tr|U7SPR8|U7SPR8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01875PE=4SV=1	tr|U7SPR8|U7SPR8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01875PE=4SV=1	tr|U7SPR8|U7SPR8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01875PE=4SV=1	MSMS	A375_MHC_IP_R2	2	443.3328552246094	3	443.319498	1326.93667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.24	1	131.43	130.93	131.93	0.18953								0	0	0	0.1636	1	51624	51624		0	0	1				25272	29584	18245	18381	24750	24750					0.2862745880913735
KKFKKRKLAKW	11	Unmodified	_KKFKKRKLAKW_					0	0	0			REV__ENSG00000087269|ENST00000416614|NOP14	REV__ENSG00000087269|ENST00000416614|NOP14	MSMS	A375_MHC_IP_R1	1	730.977294921875	2	730.982456	1459.95036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.603	1	81.603	81.103	82.103	0								0	0	0	0.16353	1	29822	29822		0.35063	0.35063	1		+		25273	16870	18246	18382	24751	24751					0.23878129360923595
KKGGGASL	8	Unmodified	_KKGGGASL_					0	0	0			REV__tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	REV__tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	359.6168212890625	2	359.216321	716.418088	-0.012341	-4.433E-06	1.7185	0.00061731	1.7061	0.00061287	359.21681844846245	142.22	0.15341	142.25	142.18	142.33	0.030731					4	2	2	0	0	0	0.77842	1	55627	55627		0.69038	0	1	2371700	+		25274	28869	18247	18383	24752	24752					0.048535750087694396
KKGGGKCG	8	Unmodified	_KKGGGKCG_					0	0	0			REV__ENST00000358748.1_1_9:132906078-132906150:-|nuORF	REV__ENST00000358748.1_1_9:132906078-132906150:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	735.3021850585938	1	734.39777	733.390493	-0.81609	-0.00059933	4.1	0.003011	3.2839	0.0024117	734.3970087882352	131.05	0.30467	131.26	131.06	131.36	0.21419					6	5	2	0	0	0	0.77861	1	51540	51540		0	0	1	1441200	+		25275	23865	18248	18384	24753	24753					0.013133484768673043
KKGHKGQG	8	Unmodified	_KKGHKGQG_					0	0	0			REV__ENST00000604430.1_1_16:29323693-29367128:+|nuORF	REV__ENST00000604430.1_1_16:29323693-29367128:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	420.6458740234375	2	420.245944	838.477334	0.12125	5.0954E-05	0.26993	0.00011344	0.39118	0.00016439	420.2459279487221	112.4	1.7327	113.12	112.76	114.5	0.72459					50	33	3	0	0	0	0.77797	1	42345	42345		2.3027	1.5091	1	3663900	+		25276	21151	18249	18385	24754	24754					0.05163471022945032
KKGHKGQG	8	Unmodified	_KKGHKGQG_					0	0	0			REV__ENST00000604430.1_1_16:29323693-29367128:+|nuORF	REV__ENST00000604430.1_1_16:29323693-29367128:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	420.245944	838.477334	0.4772	0.00020054	-0.062807	-2.6395E-05	0.41439	0.00017415	420.24579001523495	112.9	1.013	112.9	112.43	113.45	0	-0.11123	-0.00012407	NaN	2.3027	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3306500	+		25277	21151	18249	18385							0.05163471022945032
KKGHKGQG	8	Unmodified	_KKGHKGQG_					0	0	0			REV__ENST00000604430.1_1_16:29323693-29367128:+|nuORF	REV__ENST00000604430.1_1_16:29323693-29367128:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	420.245944	838.477334	0.12125	5.0954E-05	0.26993	0.00011344	0.39118	0.00016439	420.2459279487221	112.4	1.7327	113.12	112.76	114.5	0.72459	0.11123	0.0001556	NaN	2.3027	50	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3663900	+		25278	21151	18249	18385							0.05163471022945032
KKGIENKIE	9	Unmodified	_KKGIENKIE_					0	0	0		ENSG00000173085|ENST00000647002|COQ2;nc|ENSG00000173085|Q96H96-6|COQ2;nc|ENSG00000173085|Q96H96-5|COQ2;nc|ENSG00000173085|Q96H96-4|COQ2	ENSG00000173085|ENST00000647002|COQ2	ENSG00000173085|ENST00000647002|COQ2	MULTI-SECPEP	A375_MHC_IP_R1	1	353.2765808105469	3	353.544996	1057.61316	0.15118	5.3448E-05	1.1643	0.00041163	1.3155	0.00046508	353.5452771246326	42.866	0.55904	42.866	42.638	43.197	0					13	10	2	0	0	0	0.75164	1	14835	14835		9.544	1.5986	1	3434200			25279	7767	18250	18386	24755	24755					0.0866570102307378
KKGKKKKKKSL	11	Unmodified	_KKGKKKKKKSL_					0	0	0			REV__ENSG00000136045|ENST00000412830|PWP1	REV__ENSG00000136045|ENST00000412830|PWP1	MSMS	A375_MHC_IP_R1	1	434.3329162597656	3	434.309885	1299.90782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.05	1	130.05	129.55	130.55	0								0	0	0	0.16358	1	50030	50030		0.08335	0	1		+		25280	18912	18251	18387	24756	24756					0.2698673423269611
KKGKKKKKKSL	11	Unmodified	_KKGKKKKKKSL_					0	0	0			REV__ENSG00000136045|ENST00000412830|PWP1	REV__ENSG00000136045|ENST00000412830|PWP1	MSMS	A375_MHC_IP_R2	2	434.3323059082031	3	434.309885	1299.90782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.69	1	130.91	130.41	131.41	0.2142								0	0	0	0.16351	1	51399	51399		0.45452	0	1		+		25281	18912	18251	18387	24757	24757					0.2698673423269611
KKGKKKKKKSL	11	Unmodified	_KKGKKKKKKSL_					0	0	0			REV__ENSG00000136045|ENST00000412830|PWP1	REV__ENSG00000136045|ENST00000412830|PWP1	MSMS	A375_MHC_IP_R2	2	434.3327941894531	3	434.309885	1299.90782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.29	1	131.47	130.97	131.97	0.18953								0	0	0	0.16351	1	51641	51641		0.45452	0.37117	1		+		25282	18912	18251	18387	24758	24758					0.2698673423269611
KKGKVGRF	8	Unmodified	_KKGKVGRF_					0	0	0			REV__COL25A1|p.E623K|1|0.32|ENSG00000188517|chr4:108819308-108819308|C/T|missense_variant	REV__COL25A1|p.E623K|1|0.32|ENSG00000188517|chr4:108819308-108819308|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	460.6952819824219	2	460.295436	918.57632	-0.59306	-0.00027298	0.076618	3.5267E-05	-0.51644	-0.00023772	460.29542343466346	149.93	1.599	149.93	148.4	150	0					85	54	2	0	0	0	0.77842	1	57163	57163		0.69038	0.69038	1	158270	+		25283	15826	18252	18388	24759	24759					0.11377493987845355
KKGKVGRF	8	Unmodified	_KKGKVGRF_					0	0	0			REV__COL25A1|p.E623K|1|0.32|ENSG00000188517|chr4:108819308-108819308|C/T|missense_variant	REV__COL25A1|p.E623K|1|0.32|ENSG00000188517|chr4:108819308-108819308|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	460.295436	918.57632	-0.59306	-0.00027298	0.076618	3.5267E-05	-0.51644	-0.00023772	460.29542343466346	149.93	1.599	149.93	148.4	150	0	0	0	NaN	0.69038	85	54	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158270	+		25284	15826	18252	18388							0.11377493987845355
KKGLKERKL	9	Unmodified	_KKGLKERKL_					0	0	0		PLCL2|p.E1046K|1|0.31|ENSG00000154822|chr3:17067997-17067997|G/A|missense_variant	PLCL2|p.E1046K|1|0.31|ENSG00000154822|chr3:17067997-17067997|G/A|missense_variant	PLCL2|p.E1046K|1|0.31|ENSG00000154822|chr3:17067997-17067997|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	367.3168640136719	3	367.248514	1098.72371	0.080607	2.9603E-05	2.7503	0.00101	2.8309	0.0010396	367.24950900949267	19.275	0.85812	19.275	19.221	20.079	0					26	13	3	0	0	0	0.46357	2	4806	4677;4806		21.59	4.4773	1	38751000			25285	15196	18253	18389	24760;24761	24761					0.17829965801979597
KKGPSGTKL	9	Unmodified	_KKGPSGTKL_					0	0	0			REV__nc|ENSG00000054267|Q4LE39-4|ARID4B	REV__nc|ENSG00000054267|Q4LE39-4|ARID4B	MULTI-MSMS	A375_MHC_IP_R2	2	458.3208312988281	2	458.284734	914.554916	-0.69929	-0.00032047	0.024669	1.1305E-05	-0.67462	-0.00030917	458.2848130749737	59.794	0.35458	60.542	60.299	60.653	0.74714					9	6	2	0	0	0	0.61998	1	22557	22557		13.906	3.0821	1	586780	+		25286	16402	18254	18390	24762	24762					0.09422064168461475
KKHLRIHSD	9	Unmodified	_KKHLRIHSD_					0	0	0		ENST00000467811.5_1_20:50704880-50715019:-|nuORF;nc|ENSG00000020256|Q9NTW7-3|ZFP64;nc|ENSG00000020256|Q9NTW7-2|ZFP64;nc|ENSG00000020256|Q9NTW7|ZFP64	ENST00000467811.5_1_20:50704880-50715019:-|nuORF	ENST00000467811.5_1_20:50704880-50715019:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	568.6869506835938	2	567.330539	1132.64652	-0.12809	-7.2672E-05	-1.0142	-0.0005754	-1.1423	-0.00064808	567.3298257780715	125.88	1.6121	125.88	125.45	127.06	0					107	31	4	0	0	0	0.75032	1	48041	48041		4.3292	0.73274	1	258280000			25287	12287	18255	18391	24763	24763					0.08550747585650242
KKHLRIHSD	9	Unmodified	_KKHLRIHSD_					0	0	0		ENST00000467811.5_1_20:50704880-50715019:-|nuORF;nc|ENSG00000020256|Q9NTW7-3|ZFP64;nc|ENSG00000020256|Q9NTW7-2|ZFP64;nc|ENSG00000020256|Q9NTW7|ZFP64	ENST00000467811.5_1_20:50704880-50715019:-|nuORF	ENST00000467811.5_1_20:50704880-50715019:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	567.330539	1132.64652	-0.33358	-0.00018925	-1.465	-0.00083115	-1.7986	-0.0010204	567.3295702666346	125.69	2.2217	125.98	125.02	127.24	0.2951	0.052372	-0.00016161	NaN	4.3292	143	43	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202700000			25288	12287	18255	18391							0.08550747585650242
KKHQLIYD	8	Unmodified	_KKHQLIYD_					0	0	0			REV__nc|ENSG00000148219|O75129-2|ASTN2	REV__nc|ENSG00000148219|O75129-2|ASTN2	MSMS	A375_MHC_IP_R2	2	522.6956176757812	2	522.795466	1043.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.03	1	127.29	126.79	127.79	0.26593								0	0	0	0.16876	1	49750	49750		5.2307	0	1		+		25289	19619	18256	18392	24764	24764					0.056334491971938405
KKHVLIEKY	9	Unmodified	_KKHVLIEKY_					0	0	0		tr|U7SHZ9|U7SHZ9_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02179PE=4SV=1	tr|U7SHZ9|U7SHZ9_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02179PE=4SV=1	tr|U7SHZ9|U7SHZ9_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02179PE=4SV=1	MSMS	A375_MHC_IP_R2	2	386.6047668457031	3	386.572886	1156.69683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.037	1	37.808	37.308	38.308	0.7709								0	0	0	0.15486	1	13532	13532		8.9762	6.4778	1				25290	29426	18257	18393	24765	24765					0.12474857190818511
KKIEKKNF	8	Unmodified	_KKIEKKNF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MSMS	A375_MHC_IP_R2	2	517.7200317382812	2	517.821484	1033.62842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.644	1	95.389	94.889	95.889	0.74474								0	0	0	0.16876	1	35963	35963		7.9102	0	1				25291	5456	18258	18394	24766	24766					0.1129461261095912
KKIELEDLR	9	Unmodified	_KKIELEDLR_					0	0	0		ENST00000471106.5_1_1:113252636-113254039:-|nuORF;nc|ENSG00000155367|Q5JR12-2|PPM1J;ENSG00000155367|ENST00000309276|PPM1J	ENST00000471106.5_1_1:113252636-113254039:-|nuORF	ENST00000471106.5_1_1:113252636-113254039:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	381.95220947265625	3	381.895917	1142.66592	-0.36971	-0.00014119	0.20637	7.8813E-05	-0.16334	-6.238E-05	381.89595006822566	28.255	0.35429	28.934	28.706	29.06	0.67857					15	6	3	0	0	0	0.46357	1	9702	9702		21.59	1.0092	1	9794500			25292	6140	18259	18395	24767	24767					0.10029659085898857
KKIFLKYYPRW	11	Unmodified	_KKIFLKYYPRW_					0	0	0		ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	MULTI-MSMS	A375_MHC_IP_R1	1	514.6981811523438	3	514.63789	1540.89184	-0.77001	-0.00039628	-0.89816	-0.00046223	-1.6682	-0.00085851	514.6373317955854	133.2	0.66336	133.2	132.89	133.56	0					19	12	2	0	0	0	0.73925	1	51391	51391		0.08335	0.08335	1	1836300			25293	2834	18260	18396	24768	24768					0.1430302799576566
KKIGSTHGSI	10	Unmodified	_KKIGSTHGSI_					0	0	0			REV__nc|ENSG00000023734|Q9Y3F4-2|STRAP	REV__nc|ENSG00000023734|Q9Y3F4-2|STRAP	MULTI-MSMS	A375_MHC_IP_R1	1	514.6979370117188	2	514.298373	1026.58219	-0.76198	-0.00039189	0.19312	9.9321E-05	-0.56886	-0.00029257	514.2983766115187	132.75	2.4398	132.75	132.18	134.62	0					65	47	2	0	0	0	0.70651	1	51154	51154		9.3831	0	1	4029400	+		25294	16282	18261	18397	24769	24769					0.0699654770885445
KKILIIKKAFY	11	Unmodified	_KKILIIKKAFY_					0	0	0			REV__ENST00000438469.2_1_1:146553889-146554591:-|nuORF	REV__ENST00000438469.2_1_1:146553889-146554591:-|nuORF	MSMS	A375_MHC_IP_R1	1	683.0440063476562	2	682.955041	1363.89553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.07	1	91.07	90.57	91.57	0								0	0	0	0.16353	1	33463	33463		0.35063	0.35063	1		+		25295	24783	18262	18398	24770	24770					0.22813697769652208
KKILLFFLLAL	11	Unmodified	_KKILLFFLLAL_					0	0	0		tr|U7STK8|U7STK8_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01522PE=3SV=1	tr|U7STK8|U7STK8_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01522PE=3SV=1	tr|U7STK8|U7STK8_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01522PE=3SV=1	MSMS	A375_MHC_IP_R1	1	440.324462890625	3	440.300215	1317.87882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.66	1	136.66	136.16	137.16	0								0	0	0	0.16358	1	52631	52631		0.094841	0.094841	1				25296	29704	18263	18399	24771	24771					0.2325919688371414
KKILPVQLKLV	11	Unmodified	_KKILPVQLKLV_					0	0	0		ENSG00000167914|ENST00000301659|GSDMA	ENSG00000167914|ENST00000301659|GSDMA	ENSG00000167914|ENST00000301659|GSDMA	MSMS	A375_MHC_IP_R2	2	639.827880859375	2	639.947216	1277.87988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.97	1	115.66	115.16	116.16	0.68999								0	0	0	0.16337	1	43341	43341		1.1933	0.79263	1				25297	7236	18264	18400	24772	24772					0.2520541125256841
KKILRFIKRK	10	Unmodified	_KKILRFIKRK_					0	0	0			REV__ENST00000392859.7_1_11:118471445-118471652:+|nuORF	REV__ENST00000392859.7_1_11:118471445-118471652:+|nuORF	MSMS	A375_MHC_IP_R2	2	665.2608032226562	2	665.463899	1328.91324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.41	1	121.85	121.35	122.35	0.44488								0	0	0	0.15629	1	46433	46433		0.40072	0	1		+		25298	24280	18265	18401	24773	24773					0.261944578151315
KKILRRRRKIK	11	Unmodified	_KKILRRRRKIK_					0	0	0		ENST00000320876.10_2_18:2688638-2694582:+|nuORF	ENST00000320876.10_2_18:2688638-2694582:+|nuORF	ENST00000320876.10_2_18:2688638-2694582:+|nuORF	MSMS	A375_MHC_IP_R2	2	747.9495849609375	2	748.030803	1494.04705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.9	1	125.23	124.73	125.73	0.32969								0	0	0	0.1636	1	48463	48463		0	0	1				25299	10693	18266	18402	24774	24774					0.3197911664071853
KKIPLITAKSE	11	Unmodified	_KKIPLITAKSE_					0	0	0		ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-MSMS	A375_MHC_IP_R2	2	615.9552001953125	2	614.387188	1226.75982	-0.39699	-0.00024391	-0.13266	-8.1505E-05	-0.52966	-0.00032541	614.3869854718638	149.38	2.2454	149.39	147.77	150.01	0.01825					339	86	5	0	0	0	0.73809	1	57937	57937		1.1933	0.735	1	6094400			25300	6736	18267	18403	24775	24775					0.15551378188183662
KKIQVEQPQRK	11	Unmodified	_KKIQVEQPQRK_					0	0	0		PRTG|p.R1070K|1|0.51|ENSG00000166450|chr15:55620256-55620256|C/T|missense_variant	PRTG|p.R1070K|1|0.51|ENSG00000166450|chr15:55620256-55620256|C/T|missense_variant	PRTG|p.R1070K|1|0.51|ENSG00000166450|chr15:55620256-55620256|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	691.8167724609375	2	691.417343	1380.82013	-0.48863	-0.00033785	0.53711	0.00037137	0.048475	3.3517E-05	691.417246000275	149.2	2.2072	149.22	147.81	150.01	0.018707					277	82	5	0	0	0	0.73807	1	57855	57855		1.1933	1.1933	1	1469200			25301	15239	18268	18404	24776	24776					0.14495488571242277
KKIRKKILTII	11	Unmodified	_KKIRKKILTII_					0	0	0		tr|U7SIS2|U7SIS2_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02157PE=3SV=1	tr|U7SIS2|U7SIS2_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02157PE=3SV=1	tr|U7SIS2|U7SIS2_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02157PE=3SV=1	MSMS	A375_MHC_IP_R1	1	677.793701171875	2	677.48704	1352.95953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.71	1	144.71	144.21	145.21	0								0	0	0	0.1636	1	55489	55489		0	0	1				25302	29432	18269	18405	24777	24777					0.29716477926604057
KKISIIFHT	9	Unmodified	_KKISIIFHT_					0	0	0		ENST00000470112.1_1_3:71345427-71345502:-|nuORF	ENST00000470112.1_1_3:71345427-71345502:-|nuORF	ENST00000470112.1_1_3:71345427-71345502:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	363.2935485839844	3	362.893848	1085.65972	0.12933	4.6935E-05	-0.6928	-0.00025141	-0.56347	-0.00020448	362.89362679339524	40.888	0.35115	40.888	40.712	41.063	0					10	6	2	0	0	0	0.73926	1	14115	14115		8.9762	0	1	2148800			25303	12330	18270	18406	24778	24778					0.1203118564505985
KKKAGGGV	8	Unmodified	_KKKAGGGV_					0	0	0		ENST00000539658.1_1_12:121148334-121149523:+|nuORF;ENSG00000175970|ENST00000344651|UNC119B	ENST00000539658.1_1_12:121148334-121149523:+|nuORF	ENST00000539658.1_1_12:121148334-121149523:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	744.3370361328125	1	744.472649	743.465373	-0.88129	-0.00065609	3.5846	0.0026687	2.7034	0.0020126	744.4752875887915	144.79	0.13998	144.79	144.68	144.82	0					4	2	2	0	0	0	0.77861	1	55491	55491		0	0	1	702940			25304	7990	18271	18407	24779	24779					0.08337854279773182
KKKAGGGV	8	Unmodified	_KKKAGGGV_					0	0	0		ENST00000539658.1_1_12:121148334-121149523:+|nuORF;ENSG00000175970|ENST00000344651|UNC119B	ENST00000539658.1_1_12:121148334-121149523:+|nuORF	ENST00000539658.1_1_12:121148334-121149523:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	373.1407775878906	2	372.739963	743.465373	-0.024444	-9.1111E-06	1.5403	0.00057412	1.5158	0.00056501	372.74068021215203	143.66	0.53957	143.66	143.45	143.98	0					16	10	2	0	0	0	0.972	1	55128	55128		0	0	1	2337200			25305	7990	18271	18407	24780	24780					0.08337854279773182
KKKAGGGV	8	Unmodified	_KKKAGGGV_					0	0	0		ENST00000539658.1_1_12:121148334-121149523:+|nuORF;ENSG00000175970|ENST00000344651|UNC119B	ENST00000539658.1_1_12:121148334-121149523:+|nuORF	ENST00000539658.1_1_12:121148334-121149523:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	372.6380920410156	2	372.739963	743.465373	0.63175	0.00023548	1.154	0.00043015	1.7858	0.00066563	372.7405512396541	143.69	0.74574	143.71	143.34	144.08	0.024414					20	14	2	0	0	0	0.77861	1	56191	56191		0	0	1	2519600			25306	7990	18271	18407	24781	24781					0.08337854279773182
KKKAGGGV	8	Unmodified	_KKKAGGGV_					0	0	0		ENST00000539658.1_1_12:121148334-121149523:+|nuORF;ENSG00000175970|ENST00000344651|UNC119B	ENST00000539658.1_1_12:121148334-121149523:+|nuORF	ENST00000539658.1_1_12:121148334-121149523:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	744.472649	743.465373	-0.66274	-0.00049339	1.9727	0.0014686	1.31	0.00097523	744.4740495311237	144.8	0.13289	144.82	144.76	144.89	0.021408	0.011964	-0.00025211	NaN	0	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	573560			25307	7990	18271	18407							0.08337854279773182
KKKDKHKEKEK	11	Unmodified	_KKKDKHKEKEK_					0	0	0			REV__TAF3|p.L682Cfs*15|1|0.46|ENSG00000165632|chr10:7965554-7965554|T/-|frameshift_variant	REV__TAF3|p.L682Cfs*15|1|0.46|ENSG00000165632|chr10:7965554-7965554|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	476.3555908203125	3	475.956059	1424.84635	-0.88999	-0.0004236	-0.016363	-7.7881E-06	-0.90635	-0.00043138	475.9560772511353	148.89	1.7717	148.89	148.11	149.88	0					79	47	2	0	0	0	0.73934	1	56823	56823		0	0	1	180620	+		25308	20601	18272	18408	24782	24782					0.15091757742698064
KKKDKHKEKEK	11	Unmodified	_KKKDKHKEKEK_					0	0	0			REV__TAF3|p.L682Cfs*15|1|0.46|ENSG00000165632|chr10:7965554-7965554|T/-|frameshift_variant	REV__TAF3|p.L682Cfs*15|1|0.46|ENSG00000165632|chr10:7965554-7965554|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	476.3554382324219	3	475.956059	1424.84635	-0.88999	-0.0004236	-0.016363	-7.7881E-06	-0.90635	-0.00043138	475.9560772511353	148.89	1.7717	148.89	148.11	149.88	0					79	47	2	0	0	0	1.0015	1	57090	57090		0	0	1	180620	+		25309	20601	18272	18408	24783	24783					0.15091757742698064
KKKETKKLKTV	11	Unmodified	_KKKETKKLKTV_					0	0	0			REV__L1TD1|p.E591K|1|0.24|ENSG00000240563|chr1:62210545-62210545|G/A|missense_variant	REV__L1TD1|p.E591K|1|0.24|ENSG00000240563|chr1:62210545-62210545|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	444.66412353515625	3	444.297533	1329.87077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.94	1	144.94	144.44	145.44	0								0	0	0	0.16358	1	55574	55574		0.08335	0	1		+		25310	26911	18273	18409	24784	24784					0.2190301789626119
KKKEVRRSRYR	11	Unmodified	_KKKEVRRSRYR_					0	0	0		ENST00000518050.1_1_8:27466361-27472184:-|nuORF	ENST00000518050.1_1_8:27466361-27472184:-|nuORF	ENST00000518050.1_1_8:27466361-27472184:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	753.85986328125	2	753.460407	1504.90626	-0.85663	-0.00064544	0.20059	0.00015114	-0.65604	-0.0004943	753.4601477228795	140.1	0.40938	140.1	139.88	140.29	0					16	7	3	0	0	0	0.73902	1	53838	53838		0.30703	0	1	1947800			25311	12968	18274	18410	24785	24785					0.17400493196646494
KKKEVRRSRYR	11	Unmodified	_KKKEVRRSRYR_					0	0	0		ENST00000518050.1_1_8:27466361-27472184:-|nuORF	ENST00000518050.1_1_8:27466361-27472184:-|nuORF	ENST00000518050.1_1_8:27466361-27472184:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	753.460407	1504.90626	-0.69076	-0.00052046	0.52411	0.0003949	-0.16665	-0.00012557	753.4605179974936	140.06	0.36108	140.12	139.85	140.21	0.059921	0.0094606	0.00011437	NaN	0.30703	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2291400			25312	12968	18274	18410							0.17400493196646494
KKKFYNKI	8	Unmodified	_KKKFYNKI_					0	0	0			REV__tr|U7SRN9|U7SRN9_FUSNUTetraacyldisaccharide4'-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxKPE=3SV=1	REV__tr|U7SRN9|U7SRN9_FUSNUTetraacyldisaccharide4'-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxKPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	357.2567443847656	3	356.890327	1067.64915	-0.5097	-0.00018191	0.32748	0.00011688	-0.18222	-6.5033E-05	356.8903282169234	23.464	0.50541	24.094	23.828	24.333	0.63014					16	9	2	0	0	0	0.77602	1	7454	7454		9.3831	2.66	1	3649800	+		25313	28405	18275	18411	24786	24786					0.11803202990608952
KKKGAKTKAVA	11	Unmodified	_KKKGAKTKAVA_					0	0	0			REV__ENSG00000198920|ENST00000361413|KIAA0753	REV__ENSG00000198920|ENST00000361413|KIAA0753	MULTI-MSMS	A375_MHC_IP_R2	2	565.7734985351562	2	565.374415	1128.73428	-0.25623	-0.00014487	-0.47926	-0.00027096	-0.73549	-0.00041582	565.3739493623976	149.57	1.6195	149.58	148.39	150.01	0.018265					151	60	3	0	0	0	0.73897	1	57915	57915		0.35063	0.35063	1	422770	+		25314	22448	18276	18412	24787	24787					0.17505948456414444
KKKHKKPLIIV	11	Unmodified	_KKKHKKPLIIV_					0	0	0			REV__ENST00000475423.1_1_X:153991228-153993352:+|nuORF	REV__ENST00000475423.1_1_X:153991228-153993352:+|nuORF	MSMS	A375_MHC_IP_R2	2	666.46875	2	666.466107	1330.91766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.65	1	120.18	119.68	120.68	0.5321								0	0	0	0.1636	1	45589	45589		0	0	1		+		25315	18569	18277	18413	24788	24788					0.26543922238079176
KKKIIRHGLVL	11	Unmodified	_KKKIIRHGLVL_					0	0	0		ENST00000503937.5_1_4:83740125-83740179:-|nuORF	ENST00000503937.5_1_4:83740125-83740179:-|nuORF	ENST00000503937.5_1_4:83740125-83740179:-|nuORF	MSMS	A375_MHC_IP_R1	1	652.9957275390625	2	652.948082	1303.88161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.066	1	92.066	91.566	92.566	0								0	0	0	0.1636	1	33831	33831		0	0	1				25316	12813	18278	18414	24789	24789					0.24182465061221592
KKKILIIKKA	10	Unmodified	_KKKILIIKKA_					0	0	0			REV__ENST00000438469.2_1_1:146553889-146554591:-|nuORF	REV__ENST00000438469.2_1_1:146553889-146554591:-|nuORF	MSMS	A375_MHC_IP_R1	1	394.8592224121094	3	394.960193	1181.85875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.183	1	39.183	38.683	39.683	0								0	0	0	0.15642	1	13366	13366		0	0	1		+		25317	24783	18279	18415	24790	24790					0.27509445943769606
KKKKAKVRK	9	Unmodified	_KKKKAKVRK_					0	0	0			REV__ENSG00000189134|ENST00000343684|NKAPL	REV__ENSG00000189134|ENST00000343684|NKAPL	MSMS	A375_MHC_IP_R1	1	371.98895263671875	3	371.93627	1112.78698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.623	1	22.623	22.123	23.123	0								0	0	0	0.15486	1	6092	6092		0.96228	0.72643	1		+		25318	22140	18280	18416	24791	24791					0.2350995130989304
KKKKGKRKS	9	Unmodified	_KKKKGKRKS_					0	0	0		ENSG00000124177|ENST00000373233|CHD6;ENST00000470470.1_1_20:40125942-40143569:-|nuORF;nc|ENSG00000124177|Q8TD26-2|CHD6;nc|ENSG00000124177|Q8TD26-3|CHD6	ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	MSMS	A375_MHC_IP_R2	2	363.2853088378906	3	363.252258	1086.73495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.235	1	37.006	36.506	37.506	0.7709								0	0	0	0.15486	1	13192	13192		0.96228	0.69326	1				25319	3877	18281	18417	24792	24792					0.19504787896130438
KKKKKAKVR	9	Unmodified	_KKKKKAKVR_					0	0	0			REV__ENSG00000189134|ENST00000343684|NKAPL	REV__ENSG00000189134|ENST00000343684|NKAPL	MSMS	A375_MHC_IP_R2	2	371.988525390625	3	371.93627	1112.78698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.458	1	23.078	22.578	23.578	0.61937								0	0	0	0.15486	1	7136	7136		0.23584	0	1		+		25320	22140	18282	18418	24793	24793					0.2350995130989304
KKKKKKKAC	9	Unmodified	_KKKKKKKAC_					0	0	0		ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	A375_MHC_IP_R1	1	363.6531066894531	3	363.914478	1088.7216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.775	1	16.775	16.275	17.275	0								0	0	0	0.15486	1	3921	3921		0	0	1				25321	12937	18283	18419	24794	24794					0.18079213792520932
KKKKKKKESP	10	Unmodified	_KKKKKKKESP_					0	0	0		ENST00000340726.7_1_8:72273997-72274438:-|nuORF	ENST00000340726.7_1_8:72273997-72274438:-|nuORF	ENST00000340726.7_1_8:72273997-72274438:-|nuORF	MSMS	A375_MHC_IP_R1	1	410.2726135253906	3	410.27484	1227.80269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.363	1	53.363	52.863	53.863	0								0	0	0	0.1562	1	19021	19021		0.69767	0	1				25322	10860	18284	18420	24795	24795					0.19790193036260462
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	MSMS	A375_MHC_IP_R1	1	391.27459716796875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.283	1	23.283	22.783	23.783	0								0	0	0	0.15642	1	6366	6366		0	0	1		+		25323	18755	18285	18421	24796	24796					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	MSMS	A375_MHC_IP_R1	1	391.28662109375	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.36	1	24.36	23.86	24.86	0								0	0	0	0.15642	1	6897	6897		0	0	1		+		25324	18755	18285	18421	24797	24797					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	MSMS	A375_MHC_IP_R1	1	391.26177978515625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.13	1	25.13	24.63	25.63	0								0	0	0	0.15642	1	7275	7275		0	0	1		+		25325	18755	18285	18421	24798	24798					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	MSMS	A375_MHC_IP_R1	1	391.2634582519531	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.058	1	26.058	25.558	26.558	0								0	0	0	0.15642	1	7705	7705		0	0	1		+		25326	18755	18285	18421	24799	24799					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	MSMS	A375_MHC_IP_R1	1	391.2620849609375	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.082	1	32.082	31.582	32.582	0								0	0	0	0.15642	1	10332	10332		0	0	1		+		25327	18755	18285	18421	24800	24800					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	MSMS	A375_MHC_IP_R1	1	391.2911682128906	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.206	1	34.206	33.706	34.706	0								0	0	0	0.15642	1	11249	11249		0	0	1		+		25328	18755	18285	18421	24801	24801					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	MSMS	A375_MHC_IP_R1	1	391.2840576171875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.036	1	36.036	35.536	36.536	0								0	0	0	0.15642	1	12028	12028		0	0	1		+		25329	18755	18285	18421	24802	24802					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	MSMS	A375_MHC_IP_R1	1	391.2913818359375	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.844	1	44.844	44.344	45.344	0								0	0	0	0.15642	1	15665	15665		0	0	1		+		25330	18755	18285	18421	24803	24803					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	MSMS	A375_MHC_IP_R1	1	391.2853088378906	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.344	1	59.344	58.844	59.844	0								0	0	0	0.15642	1	21344	21344		0	0	1		+		25331	18755	18285	18421	24804	24804					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	MSMS	A375_MHC_IP_R2	2	391.2624816894531	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.186	1	32.923	32.423	33.423	0.73692								0	0	0	0.15642	1	11432	11432		0	0	1		+		25332	18755	18285	18421	24805	24805					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	MSMS	A375_MHC_IP_R2	2	391.2908935546875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.377	1	34.129	33.629	34.629	0.75225								0	0	0	0.15642	1	11952	11952		0	0	1		+		25333	18755	18285	18421	24806	24806					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	MSMS	A375_MHC_IP_R2	2	391.28399658203125	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.208	1	35.972	35.472	36.472	0.76338								0	0	0	0.15642	1	12754	12754		0	0	1		+		25334	18755	18285	18421	24807	24807					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	MSMS	A375_MHC_IP_R2	2	391.268310546875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.34	1	36.103	35.603	36.603	0.76338								0	0	0	0.15642	1	12809	12809		0	0	1		+		25335	18755	18285	18421	24808	24808					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF	MSMS	A375_MHC_IP_R2	2	391.2912902832031	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.004	1	44.773	44.273	45.273	0.7691								0	0	0	0.15642	1	16413	16413		0	0	1		+		25336	18755	18285	18421	24809	24809					0.25026506998415243
KKKKKKKIISV	11	Unmodified	_KKKKKKKIISV_					0	0	0			REV__AluSg_dup15702|chr8:11842937-11843245:-|1.3969872273987374|0.0428345925871658|5.03|472.0|6|2|sense	REV__AluSg_dup15702|chr8:11842937-11843245:-|1.3969872273987374|0.0428345925871658|5.03|472.0|6|2|sense	MSMS	A375_MHC_IP_R1	1	664.625732421875	2	664.479215	1326.94388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.296	1	84.296	83.796	84.796	0								0	0	0	0.1636	1	30871	30871		0	0	1		+		25337	15372	18286	18422	24810	24810					0.2934819140955369
KKKKKKKIISV	11	Unmodified	_KKKKKKKIISV_					0	0	0			REV__AluSg_dup15702|chr8:11842937-11843245:-|1.3969872273987374|0.0428345925871658|5.03|472.0|6|2|sense	REV__AluSg_dup15702|chr8:11842937-11843245:-|1.3969872273987374|0.0428345925871658|5.03|472.0|6|2|sense	MSMS	A375_MHC_IP_R1	1	664.2337036132812	2	664.479215	1326.94388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.342	1	84.342	83.842	84.842	0								0	0	0	0.1636	1	30888	30888		0	0	1		+		25338	15372	18286	18422	24811	24811					0.2934819140955369
KKKKKKKKAKL	11	Unmodified	_KKKKKKKKAKL_					0	0	0			REV__ENST00000359543.7_1_16:10626568-10626661:-|nuORF	REV__ENST00000359543.7_1_16:10626568-10626661:-|nuORF	MSMS	A375_MHC_IP_R1	1	678.5675048828125	2	678.500481	1354.98641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.739	1	87.739	87.239	88.239	0								0	0	0	0.1636	1	32199	32199		0	0	1		+		25339	23878	18287	18423	24812	24812					0.3231158653777584
KKKKKKKKHRH	11	Unmodified	_KKKKKKKKHRH_					0	0	0			REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MSMS	A375_MHC_IP_R1	1	737.851806640625	2	737.501878	1472.9892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.62	1	147.62	147.12	148.12	0								0	0	0	0.1636	1	56400	56400		0	0	1		+		25340	17443	18288	18424	24813	24813					0.2716285471528863
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	A375_MHC_IP_R1	1	469.7286071777344	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.218	1	16.218	15.718	16.718	0								0	0	0	0.1636	1	3767	3767		0	0	1				25341	10894	18289	18425	24814	24814					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	A375_MHC_IP_R1	1	469.72857666015625	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.289	1	17.289	16.789	17.789	0								0	0	0	0.1636	1	4056	4056		0	0	1				25342	10894	18289	18425	24815	24815					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	A375_MHC_IP_R1	1	469.7281494140625	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.967	1	17.967	17.467	18.467	0								0	0	0	0.1636	1	4245	4245		0	0	1				25343	10894	18289	18425	24816	24816					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	A375_MHC_IP_R1	1	469.6359558105469	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.915	1	18.915	18.415	19.415	0								0	0	0	0.1636	1	4543	4543		0	0	1				25344	10894	18289	18425	24817	24817					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	A375_MHC_IP_R2	2	469.7281188964844	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.501	1	16.089	15.589	16.589	0.58774								0	0	0	0.1636	1	4631	4631		0	0	1				25345	10894	18289	18425	24818	24818					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	A375_MHC_IP_R2	2	469.7283020019531	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.832	1	17.429	16.929	17.929	0.59616								0	0	0	0.1636	1	4961	4961		0	0	1				25346	10894	18289	18425	24819	24819					0.279389961581046
KKKKKKKKLF	10	Unmodified	_KKKKKKKKLF_					0	0	0			REV__ENST00000344423.9_1_8:28205640-28205820:-|nuORF	REV__ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	A375_MHC_IP_R1	1	435.2825927734375	3	435.314859	1302.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.075	1	97.075	96.575	97.575	0								0	0	0	0.15637	1	35669	35669		0.15932	0.15932	1		+		25347	23759	18290	18426	24820	24820					0.2834022610068132
KKKKKKKKLFL	11	Unmodified	_KKKKKKKKLFL_					0	0	0			REV__ENST00000344423.9_1_8:28205640-28205820:-|nuORF	REV__ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	A375_MHC_IP_R1	1	708.9379272460938	2	709.010682	1416.00681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.27	1	105.27	104.77	105.77	0								0	0	0	0.1636	1	38646	38646		0	0	1		+		25348	23759	18291	18427	24821	24821					0.31544757197593754
KKKKKKKKLFL	11	Unmodified	_KKKKKKKKLFL_					0	0	0			REV__ENST00000344423.9_1_8:28205640-28205820:-|nuORF	REV__ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	A375_MHC_IP_R2	2	709.1790161132812	2	709.010682	1416.00681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.253	1	99.013	98.513	99.513	0.75977								0	0	0	0.1636	1	37278	37278		0	0	1		+		25349	23759	18291	18427	24822	24822					0.31544757197593754
KKKKKKKKLKD	11	Unmodified	_KKKKKKKKLKD_					0	0	0		ENSG00000183354|ENST00000399933|KIAA2026	ENSG00000183354|ENST00000399933|KIAA2026	ENSG00000183354|ENST00000399933|KIAA2026	MSMS	A375_MHC_IP_R2	2	700.6931762695312	2	700.495396	1398.97624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.29	1	104.06	103.56	104.56	0.76428								0	0	0	0.1636	1	39121	39121		0	0	1				25350	8488	18292	18428	24823	24823					0.29270978812542126
KKKKKKKKLLL	11	Unmodified	_KKKKKKKKLLL_					0	0	0			REV__ENST00000378289.8_1_10:14940166-14940367:-|nuORF	REV__ENST00000378289.8_1_10:14940166-14940367:-|nuORF	MSMS	A375_MHC_IP_R1	1	692.0839233398438	2	692.018507	1382.02246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.51	1	101.51	101.01	102.01	0								0	0	0	0.1636	1	37305	37305		0	0	1		+		25351	24177	18293	18429	24824	24824					0.3467304371465616
KKKKKKKKLVF	11	Unmodified	_KKKKKKKKLVF_					0	0	0			REV__ENST00000522197.1_1_8:122652185-122654912:+|nuORF	REV__ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	A375_MHC_IP_R1	1	702.4142456054688	2	702.002857	1401.99116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.736	1	85.736	85.236	86.236	0								0	0	0	0.1636	1	31426	31426		0	0	1		+		25352	25648	18294	18430	24825	24825					0.3062447068052734
KKKKKKKLHLR	11	Unmodified	_KKKKKKKLHLR_					0	0	0			REV__AluSc_dup23857|chr12:55962164-55962478:+|2.035830752585091|0.0102534530081931|7.63|396.0|4|1|sense	REV__AluSc_dup23857|chr12:55962164-55962478:+|2.035830752585091|0.0102534530081931|7.63|396.0|4|1|sense	MSMS	A375_MHC_IP_R2	2	718.3274536132812	2	718.009005	1434.00346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.321	1	35.074	34.574	35.574	0.75225								0	0	0	0.1636	1	12370	12370		0	0	1		+		25353	15368	18295	18431	24826	24826					0.30381507143601993
KKKKKKKLHLR	11	Unmodified	_KKKKKKKLHLR_					0	0	0			REV__AluSc_dup23857|chr12:55962164-55962478:+|2.035830752585091|0.0102534530081931|7.63|396.0|4|1|sense	REV__AluSc_dup23857|chr12:55962164-55962478:+|2.035830752585091|0.0102534530081931|7.63|396.0|4|1|sense	MSMS	A375_MHC_IP_R2	2	718.0120239257812	2	718.009005	1434.00346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.298	1	82.043	81.543	82.543	0.74474								0	0	0	0.1636	1	30871	30871		0	0	1		+		25354	15368	18295	18431	24827	24827					0.30381507143601993
KKKKKKKLIVK	11	Unmodified	_KKKKKKKLIVK_					0	0	0			REV__nc|ENSG00000198929|O75052-3|NOS1AP	REV__nc|ENSG00000198929|O75052-3|NOS1AP	MSMS	A375_MHC_IP_R1	1	456.9852294921875	3	457.009547	1368.00681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.848	1	20.848	20.348	21.348	0								0	0	0	0.1636	1	5406	5406		0	0	1		+		25355	27451	18296	18432	24828	24828					0.33752757197589744
KKKKKKKTLIY	11	Unmodified	_KKKKKKKTLIY_					0	0	0		ENST00000297857.3_1_8:124261964-124262105:-|nuORF	ENST00000297857.3_1_8:124261964-124262105:-|nuORF	ENST00000297857.3_1_8:124261964-124262105:-|nuORF	MSMS	A375_MHC_IP_R2	2	703.4865112304688	2	703.484497	1404.95444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.3737	1	2.8327	2.3327	3.3327	0.45901								0	0	0	0.1636	1	770	770		0	0	1				25356	10519	18297	18433	24829	24829					0.2681617406399255
KKKKKKKW	8	Unmodified	_KKKKKKKW_					0	0	0			REV__ENST00000433510.2_1_17:46713876-46724046:-|nuORF	REV__ENST00000433510.2_1_17:46713876-46724046:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	551.171630859375	2	551.384586	1100.75462	-0.61959	-0.00034163	2.6926	0.0014847	2.0731	0.0011431	551.8879013340528	81.077	0.25444	81.077	80.948	81.202	0					5	4	2	0	0	0	0.972	1	29664	29664		0.79363	0.19213	1	757800	+		25357	24734	18298	18434	24830	24830					0.20827163906892565
KKKKKKLF	8	Unmodified	_KKKKKKLF_					0	0	0			REV__ENST00000344423.9_1_8:28205640-28205820:-|nuORF	REV__ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	A375_MHC_IP_R2	2	524.3746948242188	2	524.373687	1046.73282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.356	1	61.101	60.601	61.601	0.74503								0	0	0	0.16876	1	22851	22851		0.79363	0	1		+		25358	23759	18299	18435	24831	24831					0.21132359158309555
KKKKKKRRKKW	11	Unmodified	_KKKKKKRRKKW_					0	0	0		ENST00000439685.6_1_3:112358751-112359896:-|nuORF	ENST00000439685.6_1_3:112358751-112359896:-|nuORF	ENST00000439685.6_1_3:112358751-112359896:-|nuORF	MSMS	A375_MHC_IP_R1	1	771.5017700195312	2	771.533178	1541.0518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.81	1	123.81	123.31	124.31	0								0	0	0	0.1636	1	46358	46358		0	0	1				25359	11965	18300	18436	24832	24832					0.3029200078347003
KKKKKKTKA	9	Unmodified	_KKKKKKTKA_					0	0	0			REV__ENST00000340726.7_1_8:72274331-72274436:-|nuORF	REV__ENST00000340726.7_1_8:72274331-72274436:-|nuORF	MSMS	A375_MHC_IP_R1	1	544.4552612304688	2	544.387326	1086.7601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.671	1	85.671	85.171	86.171	0								0	0	0	0.15486	1	31400	31400		0	0	1		+		25360	23724	18301	18437	24833	24833					0.22018842698707886
KKKKKKTLIY	10	Unmodified	_KKKKKKTLIY_					0	0	0		ENST00000297857.3_1_8:124261964-124262105:-|nuORF	ENST00000297857.3_1_8:124261964-124262105:-|nuORF	ENST00000297857.3_1_8:124261964-124262105:-|nuORF	MSMS	A375_MHC_IP_R1	1	639.50439453125	2	639.437015	1276.85948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.159	1	21.159	20.659	21.659	0								0	0	0	0.15628	1	5524	5524		0.45834	0.45834	1				25361	10519	18302	18438	24834	24834					0.23212240592806666
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	MSMS	A375_MHC_IP_R1	1	419.28436279296875	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.892	1	30.892	30.392	31.392	0								0	0	0	0.15637	1	9860	9860		0.13989	0	1		+		25362	22016	18303	18439	24835	24835					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	MSMS	A375_MHC_IP_R1	1	419.2954406738281	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.996	1	40.996	40.496	41.496	0								0	0	0	0.15637	1	14128	14128		0.13989	0	1		+		25363	22016	18303	18439	24836	24836					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	MSMS	A375_MHC_IP_R1	1	419.32244873046875	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.489	1	45.489	44.989	45.989	0								0	0	0	0.15642	1	15920	15920		0	0	1		+		25364	22016	18303	18439	24837	24837					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	MSMS	A375_MHC_IP_R1	1	419.7156982421875	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.455	1	52.455	51.955	52.955	0								0	0	0	0.15642	1	18655	18655		0	0	1		+		25365	22016	18303	18439	24838	24838					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	MSMS	A375_MHC_IP_R1	1	419.7154846191406	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.908	1	55.908	55.408	56.408	0								0	0	0	0.15642	1	20012	20012		0	0	1		+		25366	22016	18303	18439	24839	24839					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	MSMS	A375_MHC_IP_R1	1	419.7154541015625	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.924	1	57.924	57.424	58.424	0								0	0	0	0.15642	1	20794	20794		0	0	1		+		25367	22016	18303	18439	24840	24840					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	MSMS	A375_MHC_IP_R1	1	419.30816650390625	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.76	1	59.76	59.26	60.26	0								0	0	0	0.15637	1	21502	21502		0.15932	0	1		+		25368	22016	18303	18439	24841	24841					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	MSMS	A375_MHC_IP_R1	1	419.71563720703125	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.343	1	74.343	73.843	74.843	0								0	0	0	0.15642	1	27078	27078		0	0	1		+		25369	22016	18303	18439	24842	24842					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	MSMS	A375_MHC_IP_R1	1	419.7156066894531	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.551	1	91.551	91.051	92.051	0								0	0	0	0.15642	1	33637	33637		0	0	1		+		25370	22016	18303	18439	24843	24843					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	MSMS	A375_MHC_IP_R1	1	419.71563720703125	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.6	1	107.6	107.1	108.1	0								0	0	0	0.15642	1	39482	39482		0	0	1		+		25371	22016	18303	18439	24844	24844					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	MSMS	A375_MHC_IP_R2	2	419.66864013671875	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.868	1	29.567	29.067	30.067	0.69872								0	0	0	0.1562	1	10023	10023		0.69767	0.53834	1		+		25372	22016	18303	18439	24845	24845					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	MSMS	A375_MHC_IP_R2	2	419.2843322753906	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.957	1	30.656	30.156	31.156	0.69872								0	0	0	0.15637	1	10499	10499		0.13989	0	1		+		25373	22016	18303	18439	24846	24846					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	MSMS	A375_MHC_IP_R2	2	419.3223876953125	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.488	1	45.257	44.757	45.757	0.7691								0	0	0	0.15637	1	16606	16606		0.15932	0	1		+		25374	22016	18303	18439	24847	24847					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	MSMS	A375_MHC_IP_R2	2	419.13494873046875	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.564	1	47.33	46.83	47.83	0.76519								0	0	0	0.15642	1	17442	17442		0	0	1		+		25375	22016	18303	18439	24848	24848					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	MSMS	A375_MHC_IP_R2	2	419.7154235839844	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.288	1	93.027	92.527	93.527	0.73902								0	0	0	0.15642	1	35099	35099		0	0	1		+		25376	22016	18303	18439	24849	24849					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	REV__RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	MSMS	A375_MHC_IP_R2	2	419.7154541015625	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.31	1	109.06	108.56	109.56	0.75436								0	0	0	0.15642	1	40899	40899		0	0	1		+		25377	22016	18303	18439	24850	24850					0.3054822610070005
KKKKKLVFF	9	Unmodified	_KKKKKLVFF_					0	0	0			REV__ENST00000522197.1_1_8:122652185-122654912:+|nuORF	REV__ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	582.689453125	2	583.394619	1164.77469	-0.49945	-0.00029138	1.2935	0.0007546	0.79401	0.00046322	583.8970318290021	66.801	0.25432	67.537	67.393	67.648	0.73631					5	4	2	0	0	0	0.8175	1	25333	25333		0.6015	0.6015	1	580500	+		25378	25648	18304	18440	24851	24851					0.19888914846842454
KKKKKLVFFLN	11	Unmodified	_KKKKKLVFFLN_					0	0	0			REV__ENST00000522197.1_1_8:122652185-122654912:+|nuORF	REV__ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	A375_MHC_IP_R2	2	696.879150390625	2	696.958115	1391.90168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.248	1	99.007	98.507	99.507	0.75977								0	0	0	0.16354	1	37276	37276		0.30703	0	1		+		25379	25648	18305	18441	24852	24852					0.22140216001184854
KKKKKRKKSPV	11	Unmodified	_KKKKKRKKSPV_					0	0	0		ENST00000392686.6_1_3:178977460-178977592:-|nuORF	ENST00000392686.6_1_3:178977460-178977592:-|nuORF	ENST00000392686.6_1_3:178977460-178977592:-|nuORF	MSMS	A375_MHC_IP_R2	2	677.6393432617188	2	677.972088	1353.92962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.357	1	77.098	76.598	77.598	0.74052								0	0	0	0.16353	1	28990	28990		0.35063	0.35063	1				25380	11426	18306	18442	24853	24853					0.2668153898125638
KKKKKRRKKW	10	Unmodified	_KKKKKRRKKW_					0	0	0		ENST00000439685.6_1_3:112358751-112359896:-|nuORF	ENST00000439685.6_1_3:112358751-112359896:-|nuORF	ENST00000439685.6_1_3:112358751-112359896:-|nuORF	MSMS	A375_MHC_IP_R2	2	707.711181640625	2	707.485697	1412.95684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.59	1	145.61	145.11	146.11	0.021408								0	0	0	0.15642	1	56809	56809		0	0	1				25381	11965	18307	18443	24854	24854					0.26688067312284147
KKKKKRRKKWI	11	Unmodified	_KKKKKRRKKWI_					0	0	0		ENST00000439685.6_1_3:112358751-112359896:-|nuORF	ENST00000439685.6_1_3:112358751-112359896:-|nuORF	ENST00000439685.6_1_3:112358751-112359896:-|nuORF	MSMS	A375_MHC_IP_R2	2	764.28125	2	764.027729	1526.0409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.75	1	119.36	118.86	119.86	0.60909								0	0	0	0.1636	1	45133	45133		0	0	1				25382	11965	18308	18444	24855	24855					0.2989259840919658
KKKKKSGKR	9	Unmodified	_KKKKKSGKR_					0	0	0			REV__ENST00000608340.5_1_6:127606381-127606462:+|nuORF	REV__ENST00000608340.5_1_6:127606381-127606462:+|nuORF	MSMS	A375_MHC_IP_R1	1	363.28900146484375	3	363.252258	1086.73495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.671	1	67.671	67.171	68.171	0								0	0	0	0.15486	1	24525	24525		0.23584	0	1		+		25383	26560	18309	18445	24856	24856					0.19504787896130438
KKKKKSGKR	9	Unmodified	_KKKKKSGKR_					0	0	0			REV__ENST00000608340.5_1_6:127606381-127606462:+|nuORF	REV__ENST00000608340.5_1_6:127606381-127606462:+|nuORF	MSMS	A375_MHC_IP_R2	2	363.2847900390625	3	363.252258	1086.73495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.755	1	57.505	57.005	58.005	0.75015								0	0	0	0.15486	1	21454	21454		0.23584	0	1		+		25384	26560	18309	18445	24857	24857					0.19504787896130438
KKKKKSILAKL	11	Unmodified	_KKKKKSILAKL_					0	0	0			REV__ENST00000359660.9_1_5:107195069-107195318:-|nuORF	REV__ENST00000359660.9_1_5:107195069-107195318:-|nuORF	MSMS	A375_MHC_IP_R1	1	643.0867919921875	2	642.958115	1283.90168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.471	1	69.471	68.971	69.971	0								0	0	0	0.1636	1	25210	25210		0	0	1		+		25385	23881	18310	18446	24858	24858					0.27108216001192886
KKKKKSILAKL	11	Unmodified	_KKKKKSILAKL_					0	0	0			REV__ENST00000359660.9_1_5:107195069-107195318:-|nuORF	REV__ENST00000359660.9_1_5:107195069-107195318:-|nuORF	MSMS	A375_MHC_IP_R2	2	643.1760864257812	2	642.958115	1283.90168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.912	1	71.646	71.146	72.146	0.73421								0	0	0	0.1636	1	26890	26890		0	0	1		+		25386	23881	18310	18446	24859	24859					0.27108216001192886
KKKKKSILAKL	11	Unmodified	_KKKKKSILAKL_					0	0	0			REV__ENST00000359660.9_1_5:107195069-107195318:-|nuORF	REV__ENST00000359660.9_1_5:107195069-107195318:-|nuORF	MSMS	A375_MHC_IP_R2	2	643.0864868164062	2	642.958115	1283.90168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.166	1	77.909	77.409	78.409	0.74293								0	0	0	0.1636	1	29302	29302		0	0	1		+		25387	23881	18310	18446	24860	24860					0.27108216001192886
KKKKKSVTEY	10	Unmodified	_KKKKKSVTEY_					0	0	0			REV__AluSc8_dup19793|chr19:3540086-3540259:-|1.814371482394331|0.3176790011739988|2.51|472.0|2|1|sense	REV__AluSc8_dup19793|chr19:3540086-3540259:-|1.814371482394331|0.3176790011739988|2.51|472.0|2|1|sense	MSMS	A375_MHC_IP_R1	1	619.7755126953125	2	619.876988	1237.73942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.33	1	146.33	145.83	146.83	0								0	0	0	0.15629	1	55989	55989		0.40072	0	1		+		25388	15369	18311	18447	24861	24861					0.13006207528405866
KKKKKVKVK	9	Unmodified	_KKKKKVKVK_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MSMS	A375_MHC_IP_R2	2	557.46435546875	2	557.413343	1112.81213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.838	1	92.573	92.073	93.073	0.7345								0	0	0	0.15486	1	34927	34927		0	0	1				25389	5785	18312	18448	24862	24862					0.2602400611247049
KKKKLCAA	8	Unmodified	_KKKKLCAA_					0	0	0		ENST00000336440.3_1_14:69259862-69260099:-|nuORF	ENST00000336440.3_1_14:69259862-69260099:-|nuORF	ENST00000336440.3_1_14:69259862-69260099:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	889.9656982421875	1	889.565169	888.557893	-0.28707	-0.00025536	-0.019564	-1.7403E-05	-0.30663	-0.00027277	889.5660278353976	149.77	3.2726	149.79	146.74	150.01	0.018265					317	205	3	0	0	0	0.972	1	58082	58082		0	0	1	323250			25390	10816	18313	18449	24863	24863					0.1091561602161164
KKKKLKQKLLR	11	Unmodified	_KKKKLKQKLLR_					0	0	0			REV__ENST00000584588.5_1_17:38027782-38031519:+|nuORF	REV__ENST00000584588.5_1_17:38027782-38031519:+|nuORF	MSMS	A375_MHC_IP_R2	2	706.0276489257812	2	706.003388	1409.99222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.064	1	90.796	90.296	91.296	0.7318								0	0	0	0.1636	1	34268	34268		0	0	1		+		25391	26370	18314	18450	24864	24864					0.3036268504945383
KKKKMKKLI	9	Unmodified	_KKKKMKKLI_					0	0	0			REV__ENST00000368346.7_1_1:155305486-155305633:-|nuORF	REV__ENST00000368346.7_1_1:155305486-155305633:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	573.442626953125	2	572.901754	1143.78896	-0.33037	-0.00018927	3.3842	0.0019388	3.0539	0.0017496	573.4046250053975	65.072	0.30267	65.072	64.903	65.206	0					6	5	2	0	0	0	0.75251	1	23514	23514		2.3027	1.778	1	1200900	+		25392	23991	18315	18451	24865	24865					0.2228124400348861
KKKKQKRKKEK	11	Unmodified	_KKKKQKRKKEK_					0	0	0		ENSG00000152465|ENST00000378165|NMT2;ENST00000378150.1_1_10:15177331-15210611:-|nuORF	ENSG00000152465|ENST00000378165|NMT2	ENSG00000152465|ENST00000378165|NMT2	MSMS	A375_MHC_IP_R2	2	728.98486328125	2	728.993552	1455.97255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.51	1	126.8	126.3	127.3	0.2951								0	0	0	0.1636	1	49495	49495		0	0	1				25393	5967	18316	18452	24866	24866					0.2628030903867966
KKKKQRELKEQ	11	Unmodified	_KKKKQRELKEQ_					0	0	0			REV__nc|ENSG00000147202|O60879-2|DIAPH2	REV__nc|ENSG00000147202|O60879-2|DIAPH2	MULTI-MSMS	A375_MHC_IP_R1	1	722.343017578125	2	721.943724	1441.8729	-0.92413	-0.00066717	0.49983	0.00036085	-0.4243	-0.00030632	721.9438800084996	149.14	2.5413	149.14	147.46	150	0					267	103	5	0	0	0	0.73881	1	56937	56937		0.35063	0	1	2984200	+		25394	19577	18317	18453	24867	24867					0.16963446634076718
KKKKQRELKEQ	11	Unmodified	_KKKKQRELKEQ_					0	0	0			REV__nc|ENSG00000147202|O60879-2|DIAPH2	REV__nc|ENSG00000147202|O60879-2|DIAPH2	MULTI-MSMS	A375_MHC_IP_R2	2	722.5744018554688	2	721.943724	1441.8729	-0.58915	-0.00042533	0.20862	0.00015061	-0.38053	-0.00027472	721.943666874182	149.07	2.4803	149.09	147.53	150.01	0.018707					294	106	5	0	0	0	0.73924	1	57735	57735		0	0	1	2765700	+		25395	19577	18317	18453	24868	24868					0.16963446634076718
KKKKRIIKLL	10	Unmodified	_KKKKRIIKLL_					0	0	0		GPR65|p.E220K|1|0.33|ENSG00000140030|chr14:88011505-88011505|G/A|missense_variant	GPR65|p.E220K|1|0.33|ENSG00000140030|chr14:88011505-88011505|G/A|missense_variant	GPR65|p.E220K|1|0.33|ENSG00000140030|chr14:88011505-88011505|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	634.439697265625	2	634.46865	1266.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.82	1	118.43	117.93	118.93	0.60909								0	0	0	0.15642	1	44638	44638		0	0	1				25396	14070	18318	18454	24869	24869					0.29996226100706735
KKKKRKKKTKG	11	Unmodified	_KKKKRKKKTKG_					0	0	0		nc|ENSG00000187624|Q6ZQX7-2|LIAT1;ENSG00000187624|ENST00000360127|C17orf97;nc|ENSG00000187624|Q6ZQX7-3|LIAT1;nc|ENSG00000187624|Q6ZQX7|LIAT1	nc|ENSG00000187624|Q6ZQX7-2|LIAT1	nc|ENSG00000187624|Q6ZQX7-2|LIAT1	MSMS	A375_MHC_IP_R1	1	453.7049560546875	3	453.320784	1356.94052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.15	1	146.15	145.65	146.65	0								0	0	0	0.1636	1	55930	55930		0	0	1				25397	8842	18319	18455	24870	24870					0.27632941355523144
KKKKRKKKTKG	11	Unmodified	_KKKKRKKKTKG_					0	0	0		nc|ENSG00000187624|Q6ZQX7-2|LIAT1;ENSG00000187624|ENST00000360127|C17orf97;nc|ENSG00000187624|Q6ZQX7-3|LIAT1;nc|ENSG00000187624|Q6ZQX7|LIAT1	nc|ENSG00000187624|Q6ZQX7-2|LIAT1	nc|ENSG00000187624|Q6ZQX7-2|LIAT1	MSMS	A375_MHC_IP_R1	1	679.477783203125	2	679.477537	1356.94052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.78	1	146.78	146.28	147.28	0								0	0	0	0.1636	1	56143	56143		0	0	1				25398	8842	18319	18455	24871	24871					0.27632941355523144
KKKKSTRKKRR	11	Unmodified	_KKKKSTRKKRR_					0	0	0		ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	MSMS	A375_MHC_IP_R1	1	722.8883666992188	2	722.488968	1442.96338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.34	1	144.34	143.84	144.84	0								0	0	0	0.1636	1	55355	55355		0	0	1				25399	5110	18320	18456	24872	24872					0.25961960473000545
KKKKWNQRPQG	11	Unmodified	_KKKKWNQRPQG_					0	0	0			REV__ENST00000274140.9_1_5:10435413-10435635:+|nuORF	REV__ENST00000274140.9_1_5:10435413-10435635:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	699.8086547851562	2	699.409852	1396.80515	-0.95226	-0.00066602	-1.1118	-0.00077762	-2.0641	-0.0014436	699.4090361917829	139.47	2.1443	139.47	138.76	140.91	0					63	41	2	0	0	0	0.73795	1	53483	53483		1.3295	0.13619	1	1114400	+		25400	23286	18321	18457	24873	24873					0.12262041493909237
KKKLFKLI	8	Unmodified	_KKKLFKLI_					0	0	0			REV__ENST00000578175.5_1_17:66246915-66252971:+|nuORF	REV__ENST00000578175.5_1_17:66246915-66252971:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	509.8871765136719	2	509.362788	1016.71102	-0.6331	-0.00032248	0.66567	0.00033907	0.032568	1.6589E-05	509.36305508164526	86.048	0.25105	86.048	85.87	86.121	0					6	4	2	0	0	0	0.77781	1	31524	31524		2.8892	0	1	1720900	+		25401	22226	18322	18458	24874	24874					0.20333554409762655
KKKLKALISSE	11	Unmodified	_KKKLKALISSE_					0	0	0			REV__nc|ENSG00000183020|O94973-3|AP2A2	REV__nc|ENSG00000183020|O94973-3|AP2A2	MULTI-MSMS	A375_MHC_IP_R1	1	1245.1932373046875	1	1244.79365	1243.78637	-0.36814	-0.00045826	0.21088	0.0002625	-0.15726	-0.00019576	1244.7935485916285	149.44	1.864	149.44	148.07	149.93	0					158	53	4	0	0	0	0.73934	2	56841	56841;57038		0	0	1	1199400	+		25402	21727	18323	18459	24875;24876	24875					0.17423067079539578
KKKLKALISSE	11	Unmodified	_KKKLKALISSE_					0	0	0			REV__nc|ENSG00000183020|O94973-3|AP2A2	REV__nc|ENSG00000183020|O94973-3|AP2A2	MULTI-SECPEP	A375_MHC_IP_R1	1	1245.1932373046875	1	1244.79365	1243.78637	-0.36814	-0.00045826	0.21088	0.0002625	-0.15726	-0.00019576	1244.7935485916285	149.44	1.864	149.44	148.07	149.93	0					158	53	4	0	0	0	1.0015	1	56841	56841		0	0	1	1199400	+		25403	21727	18323	18459	24877	24877					0.17423067079539578
KKKLKKKRKLV	11	Unmodified	_KKKLKKKRKLV_					0	0	0			REV__ENST00000372600.8_1_9:131679364-131679535:+|nuORF	REV__ENST00000372600.8_1_9:131679364-131679535:+|nuORF	MSMS	A375_MHC_IP_R2	2	698.808349609375	2	699.013756	1396.01296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.128	1	83.868	83.368	84.368	0.73962								0	0	0	0.1636	1	31593	31593		0	0	1		+		25404	24070	18324	18460	24878	24878					0.3307927542909965
KKKLKKLSS	9	Unmodified	_KKKLKKLSS_					0	0	0			REV__ENSG00000133302|ENST00000265140|SLF1	REV__ENSG00000133302|ENST00000265140|SLF1	MSMS	A375_MHC_IP_R2	2	530.3494873046875	2	530.366059	1058.71756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.733	1	88.465	87.965	88.965	0.7318								0	0	0	0.15486	1	33373	33373		0.52476	0	1		+		25405	18715	18325	18461	24879	24879					0.1905544757048574
KKKLLKKAAL	10	Unmodified	_KKKLLKKAAL_					0	0	0		ENSG00000189132|ENST00000329357|FAM47B;ENSG00000198173|ENST00000358047|FAM47C	ENSG00000189132|ENST00000329357|FAM47B	ENSG00000189132|ENST00000329357|FAM47B	MSMS	A375_MHC_IP_R1	1	570.9775390625	2	570.913176	1139.8118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.63	1	104.63	104.13	105.13	0								0	0	0	0.15628	1	38419	38419		0.45834	0	1				25406	8963	18326	18462	24880	24880					0.24748586392615834
KKKLRPAA	8	Unmodified	_KKKLRPAA_					0	0	0		OPN5|p.E69A|1|0.26|ENSG00000124818|chr6:47786590-47786590|A/C|missense_variant	OPN5|p.E69A|1|0.26|ENSG00000124818|chr6:47786590-47786590|A/C|missense_variant	OPN5|p.E69A|1|0.26|ENSG00000124818|chr6:47786590-47786590|A/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	456.2978820800781	2	456.311087	910.60762	-0.14788	-6.7481E-05	0.042382	1.9339E-05	-0.1055	-4.8141E-05	456.3110230196849	44.103	0.56144	44.103	43.859	44.42	0					12	10	2	0	0	0	0.77797	1	15281	15281		2.3027	1.5091	1	1612900			25407	15055	18327	18463	24881	24881					0.1487406702193539
KKKLRPAA	8	Unmodified	_KKKLRPAA_					0	0	0		OPN5|p.E69A|1|0.26|ENSG00000124818|chr6:47786590-47786590|A/C|missense_variant	OPN5|p.E69A|1|0.26|ENSG00000124818|chr6:47786590-47786590|A/C|missense_variant	OPN5|p.E69A|1|0.26|ENSG00000124818|chr6:47786590-47786590|A/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	456.2976989746094	2	456.311087	910.60762	-0.15254	-6.9604E-05	0.17355	7.9192E-05	0.021012	9.5882E-06	456.31109607115724	42.977	0.45525	43.749	43.573	44.028	0.7724					11	8	2	0	0	0	0.77717	1	16069	16069		5.2307	2.6532	1	2188500			25408	15055	18327	18463	24882	24882					0.1487406702193539
KKKLSVVLLY	10	Unmodified	_KKKLSVVLLY_					0	0	0			REV__ENST00000473682.5_1_1:111740397-111743081:-|nuORF	REV__ENST00000473682.5_1_1:111740397-111743081:-|nuORF	MSMS	A375_MHC_IP_R1	1	595.9400634765625	2	595.897192	1189.77983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.852	1	77.852	77.352	78.352	0								0	0	0	0.15628	1	28412	28412		0.45834	0	1		+		25409	20309	18328	18464	24883	24883					0.19253173918832545
KKKPFFKQI	9	Unmodified	_KKKPFFKQI_					0	0	0			REV__ENST00000481145.1_1_1:89729385-89732242:-|nuORF	REV__ENST00000481145.1_1_1:89729385-89732242:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	387.9437255859375	3	388.581493	1162.72265	-0.32786	-0.0001274	-0.0031456	-1.2223E-06	-0.33101	-0.00012862	388.58146314781186	54.719	0.61032	55.469	55.219	55.83	0.75075					16	11	2	0	0	0	0.81688	1	20561	20561		1.0715	0	1	1194900	+		25410	19885	18329	18465	24884	24884					0.14779751433070487
KKKPFFKQI	9	Unmodified	_KKKPFFKQI_					0	0	0			REV__ENST00000481145.1_1_1:89729385-89732242:-|nuORF	REV__ENST00000481145.1_1_1:89729385-89732242:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	388.581493	1162.72265	0.26181	0.00010173	0.43931	0.00017071	0.70112	0.00027244	388.91601108831594	55.811	0.50877	55.811	55.482	55.991	0	0.17082	0.00025593	NaN	1.0715	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1407300	+		25411	19885	18329	18465							0.14779751433070487
KKKPIENQI	9	Unmodified	_KKKPIENQI_					0	0	0			REV__ENSG00000009780|ENST00000373954|FAM76A	REV__ENSG00000009780|ENST00000373954|FAM76A	MULTI-SECPEP	A375_MHC_IP_R2	2	367.3167419433594	3	366.560758	1096.66044	-0.15463	-5.668E-05	-2.4198	-0.00088702	-2.5745	-0.0009437	366.5600665871089	18.848	0.16035	19.451	19.423	19.583	0.60308					7	4	2	0	0	0	0.70759	1	5685	5685		20.581	3.1383	1	31090000	+		25412	16186	18330	18466	24885	24885					0.11597980294095578
KKKPSLTLPQ	10	Unmodified	_KKKPSLTLPQ_					0	0	0			REV__KCNMA1|p.S762L|1|0.53|ENSG00000156113|chr10:76970049-76970049|G/A|missense_variant	REV__KCNMA1|p.S762L|1|0.53|ENSG00000156113|chr10:76970049-76970049|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	570.7608032226562	2	570.360973	1138.70739	-0.6505	-0.00037102	0.049192	2.8057E-05	-0.60131	-0.00034296	570.3607999997523	149.63	2.1584	149.63	147.85	150	0					247	68	5	0	0	0	0.72378	1	56991	56991		1.6526	0.32309	1	3088700	+		25413	26832	18331	18467	24886	24886					0.14358839845226612
KKKPSLTLPQ	10	Unmodified	_KKKPSLTLPQ_					0	0	0			REV__KCNMA1|p.S762L|1|0.53|ENSG00000156113|chr10:76970049-76970049|G/A|missense_variant	REV__KCNMA1|p.S762L|1|0.53|ENSG00000156113|chr10:76970049-76970049|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	570.729736328125	2	570.360973	1138.70739	-0.11636	-6.6365E-05	-0.28254	-0.00016115	-0.3989	-0.00022751	570.3606373614134	149.62	2.115	149.64	147.9	150.01	0.01825					278	75	5	0	0	0	0.94862	1	58028	58028		1.6526	0.32309	1	2548400	+		25414	26832	18331	18467	24887	24887					0.14358839845226612
KKKQIEALQGE	11	Unmodified	_KKKQIEALQGE_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-MSMS	A375_MHC_IP_R1	1	636.7998046875	2	636.369527	1270.7245	-1.0417	-0.00066293	0.21409	0.00013624	-0.82765	-0.00052669	636.3694112871333	149.4	1.7393	149.4	148.26	150	0					154	57	4	0	0	0	0.73795	1	56916	56916		1.3295	0	1	545220			25415	2362	18332	18468	24888	24888					0.09996715660395239
KKKQKKKIL	9	Unmodified	_KKKQKKKIL_					0	0	0		ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	MULTI-SECPEP	A375_MHC_IP_R2	2	571.1441650390625	2	571.410801	1140.80705	-0.21852	-0.00012486	2.5262	0.0014435	2.3077	0.0013186	571.4123137051035	109.06	0.25758	109.8	109.57	109.83	0.74684					5	4	2	0	0	0	0.8175	1	41138	41138		0	0	1	699740			25416	8712	18333	18469	24889	24889					0.24227702249845606
KKKQLTKW	8	Unmodified	_KKKQLTKW_					0	0	0			REV__ENSG00000184345|ENST00000333127|IQCF2	REV__ENSG00000184345|ENST00000333127|IQCF2	MULTI-SECPEP	A375_MHC_IP_R1	1	354.2789611816406	3	353.89396	1058.66005	-0.08789	-3.1104E-05	-0.10952	-3.8759E-05	-0.19741	-6.9863E-05	353.8938816598435	24.882	0.35534	24.882	24.749	25.104	0					10	6	3	0	0	0	0.972	1	7257	7257		1.6526	0	1	4543200	+		25417	21810	18334	18470	24890	24890					0.13306605364869029
KKKRFAAF	8	Unmodified	_KKKRFAAF_					0	0	0			REV__nc|ENSG00000164465|Q8N8Z6-2|DCBLD1	REV__nc|ENSG00000164465|Q8N8Z6-2|DCBLD1	MULTI-MSMS	A375_MHC_IP_R1	1	498.71124267578125	2	498.311087	994.60762	-0.73716	-0.00036733	1.1106	0.00055341	0.37341	0.00018607	498.31150564207525	141.65	0.30315	141.65	141.52	141.83	0					9	5	2	0	0	0	0.77839	1	54384	54384		0.79363	0	1	1237600	+		25418	20497	18335	18471	24891	24891					0.1101006702193672
KKKRKKKLLIE	11	Unmodified	_KKKRKKKLLIE_					0	0	0			REV__ENST00000367142.4_1_1:205687318-205687402:-|nuORF	REV__ENST00000367142.4_1_1:205687318-205687402:-|nuORF	MSMS	A375_MHC_IP_R2	2	706.4943237304688	2	706.495396	1410.97624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.814	1	79.559	79.059	80.059	0.74474								0	0	0	0.16354	1	29916	29916		0.30703	0.30703	1		+		25419	23956	18336	18472	24892	24892					0.2871897881254881
KKKRKRRKRLP	11	Unmodified	_KKKRKRRKRLP_					0	0	0			REV__ENSG00000174808|ENST00000395743|BTC	REV__ENSG00000174808|ENST00000395743|BTC	MSMS	A375_MHC_IP_R1	1	747.2994995117188	2	747.520602	1493.02665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.942	1	80.942	80.442	81.442	0								0	0	0	0.1636	1	29575	29575		0	0	1		+		25420	21304	18337	18473	24893	24893					0.2998594598091131
KKKRREPSIP	10	Unmodified	_KKKRREPSIP_					0	0	0		ENST00000279392.7_1_16:30006934-30007012:-|nuORF	ENST00000279392.7_1_16:30006934-30007012:-|nuORF	ENST00000279392.7_1_16:30006934-30007012:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	620.2874755859375	2	619.888221	1237.76189	-0.74488	-0.00046174	-0.70904	-0.00043953	-1.4539	-0.00090127	619.8878292599254	139.4	0.55971	139.4	139.22	139.78	0					19	10	3	0	0	0	0.94862	1	53584	53584		1.6526	0	1	1836700			25421	10416	18338	18474	24894	24894					0.1525185171665271
KKKRREPSIP	10	Unmodified	_KKKRREPSIP_					0	0	0		ENST00000279392.7_1_16:30006934-30007012:-|nuORF	ENST00000279392.7_1_16:30006934-30007012:-|nuORF	ENST00000279392.7_1_16:30006934-30007012:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	619.888221	1237.76189	-0.51175	-0.00031723	-0.97306	-0.00060319	-1.4848	-0.00092041	619.887525533654	139.37	0.44917	139.43	139.25	139.7	0.059906	0.014965	-8.0302E-05	NaN	1.6526	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2031800			25422	10416	18338	18474							0.1525185171665271
KKKRTSVLDYF	11	Unmodified	_KKKRTSVLDYF_					0	0	0			REV__ENSG00000100055|ENST00000248901|CYTH4	REV__ENSG00000100055|ENST00000248901|CYTH4	MULTI-SECPEP	A375_MHC_IP_R2	2	462.9696044921875	3	462.269755	1383.78744	-0.68448	-0.00031641	-0.22319	-0.00010317	-0.90766	-0.00041959	462.2696817275574	37.754	0.40881	38.528	38.33	38.739	0.77451					11	7	2	0	0	0	0.99606	1	13765	13765		0.45452	0	1	2230100	+		25423	17045	18339	18475	24895	24895					0.11089281448425936
KKKSGGMK	8	Unmodified	_KKKSGGMK_					0	0	0		ENSG00000154237|ENST00000388948|LRRK1;LRRK1|p.I1366Nfs*21|1|0.31|ENSG00000154237|chr15:101054981-101054982|-/A|frameshift_variant;ENST00000525284.5_1_15:101565016-101602660:+|nuORF	ENSG00000154237|ENST00000388948|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	MULTI-MSMS	A375_MHC_IP_R1	1	863.9129638671875	1	863.513134	862.505857	-0.65433	-0.00056502	0.70572	0.0006094	0.051394	4.4379E-05	863.5135096661413	145.82	0.077393	145.82	145.78	145.86	0					18	10	2	0	0	0	0.77861	1	55848	55848		0	0	1	116250			25424	6073	18340	18476	24896	24896					0.06910452607883144
KKKSGGMK	8	Unmodified	_KKKSGGMK_					0	0	0		ENSG00000154237|ENST00000388948|LRRK1;LRRK1|p.I1366Nfs*21|1|0.31|ENSG00000154237|chr15:101054981-101054982|-/A|frameshift_variant;ENST00000525284.5_1_15:101565016-101602660:+|nuORF	ENSG00000154237|ENST00000388948|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	MULTI-MATCH	A375_MHC_IP_R2	2		1	863.513134	862.505857	-0.41736	-0.00036039	0.36576	0.00031584	-0.0516	-4.4558E-05	863.5135664148833	145.84	0.090088	145.86	145.81	145.9	0.021408	0.016833	-0.00019039	NaN	0	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92725			25425	6073	18340	18476							0.06910452607883144
KKKVKKIVKS	10	Unmodified	_KKKVKKIVKS_					0	0	0			REV__nc|ENSG00000167525|Q8NCQ7-2|PROCA1	REV__nc|ENSG00000167525|Q8NCQ7-2|PROCA1	MSMS	A375_MHC_IP_R1	1	593.5574951171875	2	593.423908	1184.83326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.04	1	117.04	116.54	117.54	0								0	0	0	0.15642	1	42948	42948		0	0	1		+		25426	20767	18341	18477	24897	24897					0.2482397142132413
KKKVKKTKRRL	11	Unmodified	_KKKVKKTKRRL_					0	0	0			REV__ENSG00000204767|ENST00000377365|INSYN2B	REV__ENSG00000204767|ENST00000377365|INSYN2B	MSMS	A375_MHC_IP_R1	1	707.1621704101562	2	706.998637	1411.98272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.75	1	106.75	106.25	107.25	0								0	0	0	0.1636	1	39180	39180		0	0	1		+		25427	22540	18342	18478	24898	24898					0.2932091676393611
KKLAVIVDDKV	11	Unmodified	_KKLAVIVDDKV_					0	0	0			REV__ENSG00000162623|ENST00000370867|TYW3	REV__ENSG00000162623|ENST00000370867|TYW3	MULTI-MSMS	A375_MHC_IP_R1	1	615.9555053710938	2	614.387188	1226.75982	-0.69427	-0.00042655	0.026496	1.6279E-05	-0.66778	-0.00041027	614.3870870769123	149.34	2.4004	149.34	147.6	150	0					323	89	5	0	0	0	0.73795	1	56944	56944		1.3295	0.87119	1	7426100	+		25428	20278	18343	18479	24899	24899					0.15551378188160925
KKLEEDPWATV	11	Unmodified	_KKLEEDPWATV_					0	0	0		tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	438.9297180175781	3	439.234599	1314.68197	-0.16064	-7.0558E-05	0.22099	9.7067E-05	0.060353	2.6509E-05	439.2343995852418	28.254	0.85778	28.254	27.836	28.694	0					46	16	4	0	0	0	0.99482	1	8840	8840		6.2344	0.83165	1	8186000			25429	29999	18344	18480	24900	24900					0.037213205321450005
KKLEKKKETI	10	Unmodified	_KKLEKKKETI_					0	0	0		ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	MULTI-SECPEP	A375_MHC_IP_R1	1	623.2996826171875	2	622.900463	1243.78637	-0.83842	-0.00052225	0.13724	8.5488E-05	-0.70118	-0.00043677	622.9003820973729	149.48	2.2487	149.48	147.75	150	0					251	75	4	0	0	0	0.95026	1	57081	57081		0.45834	0	1	2353100			25430	5357	18345	18481	24901	24901					0.1742306707951684
KKLEQERREQR	11	Unmodified	_KKLEQERREQR_					0	0	0		TCHH|p.R557K|1|0.05|ENSG00000159450|chr1:152111547-152111547|C/T|missense_variant	TCHH|p.R557K|1|0.05|ENSG00000159450|chr1:152111547-152111547|C/T|missense_variant	TCHH|p.R557K|1|0.05|ENSG00000159450|chr1:152111547-152111547|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	500.6565246582031	3	500.618217	1498.83282	-0.48804	-0.00024432	0.75409	0.00037751	0.26605	0.00013319	500.6184710888915	134.01	0.8687	134.17	133.7	134.57	0.16487					27	16	2	0	0	0	0.73807	1	52593	52593		1.2148	0.588	1	2176200			25431	29312	18346	18482	24902	24902					0.10335899963479278
KKLFLKRKFY	10	Unmodified	_KKLFLKRKFY_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	A375_MHC_IP_R1	1	685.7804565429688	2	685.937183	1369.85981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.602	1	83.602	83.102	84.102	0								0	0	0	0.15628	1	30596	30596		0.45834	0	1				25432	10883	18347	18483	24903	24903					0.18967660312614498
KKLGEQVFG	9	Unmodified	_KKLGEQVFG_					0	0	0		SLC38A1|p.E135K|1|0.22|ENSG00000111371|chr12:46207607-46207607|C/T|missense_variant	SLC38A1|p.E135K|1|0.22|ENSG00000111371|chr12:46207607-46207607|C/T|missense_variant	SLC38A1|p.E135K|1|0.22|ENSG00000111371|chr12:46207607-46207607|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	503.6891174316406	2	503.290017	1004.56548	-0.87183	-0.00043878	-0.20047	-0.0001009	-1.0723	-0.00053968	503.289926337649	62.063	0.75947	62.805	62.471	63.23	0.74263					35	14	3	0	0	0	0.58271	1	23482	23482		14.838	8.1151	1	4745400			25433	29184	18348	18484	24904	24904					0.06338046822907017
KKLIAEKLR	9	Unmodified	_KKLIAEKLR_					0	0	0			REV__DPP10|p.M520R|1|0.24|ENSG00000175497|chr2:115791108-115791108|T/G|missense_variant	REV__DPP10|p.M520R|1|0.24|ENSG00000175497|chr2:115791108-115791108|T/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	367.2675476074219	3	366.916764	1097.72846	0.51768	0.00018995	-0.52485	-0.00019258	-0.0071745	-2.6324E-06	367.2510669047577	21.621	0.25251	21.621	21.454	21.706	0					6	4	2	0	0	0	0.81448	1	5743	5743		2.086	0.17963	1	265430	+		25434	16030	18349	18485	24905	24905					0.18350849944727088
KKLKNQIQI	9	Unmodified	_KKLKNQIQI_					0	0	0			REV__nc|ENSG00000146463|Q5VZL5-2|ZMYM4	REV__nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-MSMS	A375_MHC_IP_R1	1	371.61114501953125	3	371.576519	1111.70773	0.33855	0.0001258	0.16142	5.9979E-05	0.49997	0.00018578	371.5764979729426	31.844	0.4079	31.844	31.616	32.024	0					10	7	2	0	0	0	0.76492	1	10228	10228		1.1933	0	1	1033400	+		25435	19539	18350	18486	24906	24906					0.15634259565081265
KKLLEELLNK	10	Unmodified	_KKLLEELLNK_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MSMS	A375_MHC_IP_R2	2	615.95556640625	2	614.387188	1226.75982	-0.39699	-0.00024391	-0.13266	-8.1505E-05	-0.52966	-0.00032541	614.3869854718638	149.38	2.2454	149.39	147.77	150.01	0.01825					339	86	5	0	0	0	0.72416	1	58128	58128		1.4819	0	1	6094400			25436	3101	18351	18487	24907	24907					0.15551378188183662
KKLLIKAKKRE	11	Unmodified	_KKLLIKAKKRE_					0	0	0			REV__nc|ENSG00000136522|Q9HD33-3|MRPL47	REV__nc|ENSG00000136522|Q9HD33-3|MRPL47	MSMS	A375_MHC_IP_R1	1	677.779541015625	2	677.966471	1353.91839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.206	1	81.206	80.706	81.706	0								0	0	0	0.16351	1	29673	29673		1.3295	0	1		+		25437	18944	18352	18488	24908	24908					0.2555871688712159
KKLLKQHEY	9	Unmodified	_KKLLKQHEY_					0	0	0		ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-SECPEP	A375_MHC_IP_R1	1	593.2446899414062	2	593.850773	1185.68699	-0.72535	-0.00043075	-1.8303	-0.0010869	-2.5557	-0.0015177	593.8474766576456	149.74	0.089157	149.74	149.69	149.78	0					6	4	2	0	0	0	0.8028	1	57130	57130		4.3292	2.8473	1	35999			25438	1208	18353	18489	24909	24909					0.10157669185423401
KKLLKRLVKV	10	Unmodified	_KKLLKRLVKV_					0	0	0			REV__ENST00000414369.2_1_2:53984069-54014663:-|nuORF	REV__ENST00000414369.2_1_2:53984069-54014663:-|nuORF	MSMS	A375_MHC_IP_R1	1	612.7882690429688	2	612.94755	1223.88055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.64	1	92.64	92.14	93.14	0								0	0	0	0.15642	1	34048	34048		0	0	1		+		25439	17866	18354	18490	24910	24910					0.27756250692300455
KKLLLLQQDRY	11	Unmodified	_KKLLLLQQDRY_					0	0	0			REV__ENSG00000123684|ENST00000366997|LPGAT1	REV__ENSG00000123684|ENST00000366997|LPGAT1	MULTI-MSMS	A375_MHC_IP_R1	1	709.8285522460938	2	709.429919	1416.84528	-0.94815	-0.00067264	-0.66221	-0.00046979	-1.6104	-0.0011424	709.4293317482887	149.66	1.196	149.66	148.81	150	0					100	46	3	0	0	0	0.73902	1	57114	57114		0.30703	0.30703	1	145080	+		25440	18257	18355	18491	24911	24911					0.15353543373839784
KKLLSVVKCL	10	Unmodified	_KKLLSVVKCL_					0	0	0			REV__CXCR2|p.E127K|1|0.22|ENSG00000180871|chr2:218135180-218135180|G/A|missense_variant	REV__CXCR2|p.E127K|1|0.22|ENSG00000180871|chr2:218135180-218135180|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	377.6412658691406	3	377.582505	1129.72569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.768	1	38.542	38.042	39.042	0.77451								0	0	0	0.15547	1	13844	13844		3.0723	0.98626	1		+		25441	15942	18356	18492	24912	24912					0.16601258495597904
KKLNEKGMY	9	Unmodified	_KKLNEKGMY_					0	0	0			REV__nc|ENSG00000054654|Q8WXH0|SYNE2	REV__nc|ENSG00000054654|Q8WXH0|SYNE2	MSMS	A375_MHC_IP_R1	1	370.9295959472656	3	370.870715	1109.59032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.367	1	51.367	50.867	51.867	0								0	0	0	0.15486	1	18232	18232		1.0715	0.10919	1		+		25442	16407	18357	18493	24913	24913					0.03990358633973301
KKLNKNAKL	9	Unmodified	_KKLNKNAKL_					0	0	0		tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	353.60467529296875	3	352.901114	1055.68151	-0.53888	-0.00019017	-0.13283	-4.6874E-05	-0.6717	-0.00023705	352.901046878612	19.903	0.91371	20.513	20.044	20.958	0.61029					43	17	3	0	0	0	0.64808	1	6008	6008		7.609	3.0801	1	6414700			25443	29408	18358	18494	24914	24914					0.15589990393596054
KKLRHISNSQL	11	Unmodified	_KKLRHISNSQL_					0	0	0			REV__nc|ENSG00000160271|Q12967-6|RALGDS	REV__nc|ENSG00000160271|Q12967-6|RALGDS	MSMS	A375_MHC_IP_R2	2	662.6614379882812	2	662.39641	1322.77827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.23	1	143.26	142.76	143.76	0.024841								0	0	0	0.16307	1	55982	55982		2.7352	0	1		+		25444	20156	18359	18495	24915	24915					0.1297893288274281
KKLRRNRR	8	Unmodified	_KKLRRNRR_					0	0	0		HEPH|p.R1137K|1|0.21|ENSG00000089472|chrX:66266605-66266605|G/A|missense_variant	HEPH|p.R1137K|1|0.21|ENSG00000089472|chrX:66266605-66266605|G/A|missense_variant	HEPH|p.R1137K|1|0.21|ENSG00000089472|chrX:66266605-66266605|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	376.25299072265625	3	376.251252	1125.73193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.448	1	24.448	23.948	24.948	0								0	0	0	0.16876	1	6943	6943		3.2813	0.78282	1				25445	14107	18360	18496	24916	24916					0.17408957561951866
KKLRVDLERNK	11	Unmodified	_KKLRVDLERNK_					0	0	0		ENSG00000109063|ENST00000583535|MYH3	ENSG00000109063|ENST00000583535|MYH3	ENSG00000109063|ENST00000583535|MYH3	MULTI-MSMS	A375_MHC_IP_R1	1	700.3301391601562	2	699.930617	1397.84668	-0.96522	-0.00067559	0.47968	0.00033574	-0.48554	-0.00033985	699.9307612240314	149.16	2.45	149.16	147.55	150	0					281	94	5	0	0	0	0.73809	1	56971	56971		1.1933	0	1	2976900			25446	2851	18361	18497	24917	24917					0.16367177462598193
KKLRVFVYR	9	Unmodified	_KKLRVFVYR_					0	0	0		ENSG00000120708|ENST00000442011|TGFBI;ENST00000509485.5_1_5:135390439-135392141:+|nuORF;ENST00000515433.1_1_5:135385061-135390565:+|nuORF	ENSG00000120708|ENST00000442011|TGFBI	ENSG00000120708|ENST00000442011|TGFBI	MULTI-MSMS	A375_MHC_IP_R2	2	403.62408447265625	3	403.592392	1207.75535	-0.21151	-8.5363E-05	0.011176	4.5105E-06	-0.20033	-8.0852E-05	403.59238396681155	37.681	1.025	38.455	38.124	39.149	0.77451					58	19	4	0	0	0	0.73141	1	14048	14048		4.1895	1.691	1	51438000			25447	3681	18362	18498	24918	24918					0.1597795855593631
KKLSRTVKF	9	Unmodified	_KKLSRTVKF_					0	0	0		ENSG00000183454|ENST00000330684|GRIN2A;nc|ENSG00000183454|Q12879-2|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	MULTI-SECPEP	A375_MHC_IP_R1	1	553.68798828125	2	553.855858	1105.69716	-0.33858	-0.00018752	-3.9505	-0.002188	-4.2891	-0.0023755	553.8533658636378	68.965	0.30239	68.965	68.819	69.121	0					7	5	2	0	0	0	0.77901	1	24983	24983		5.7319	1.7875	1	1027500			25448	8496	18363	18499	24919	24919					0.14854276910659792
KKLTDLLKQP	10	Unmodified	_KKLTDLLKQP_					0	0	0			REV__ENSG00000136854|ENST00000373299|STXBP1	REV__ENSG00000136854|ENST00000373299|STXBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	592.77392578125	2	592.374081	1182.73361	-0.70626	-0.00041837	0.37488	0.00022207	-0.33138	-0.0001963	592.3741776215314	149.47	2.5413	149.47	147.46	150	0					331	103	5	0	0	0	0.94862	1	57133	57133		0	0	1	4846700	+		25449	18963	18364	18500	24920	24920					0.149551090166824
KKLVSVLKASQ	11	Unmodified	_KKLVSVLKASQ_					0	0	0			REV__ENST00000566515.5_1_15:43486293-43487036:+|nuORF	REV__ENST00000566515.5_1_15:43486293-43487036:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	601.2870483398438	2	600.887355	1199.76016	-0.72963	-0.00043842	0.33114	0.00019898	-0.39849	-0.00023945	600.8873215397418	149.47	1.9333	149.47	148.07	150	0					218	61	4	0	0	0	0.99955	1	57103	57103		2.9952	1.8019	1	1602800	+		25450	26241	18365	18501	24921	24921					0.16826797908038316
KKLVSVLKASQ	11	Unmodified	_KKLVSVLKASQ_					0	0	0			REV__ENST00000566515.5_1_15:43486293-43487036:+|nuORF	REV__ENST00000566515.5_1_15:43486293-43487036:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	601.9400634765625	2	600.887355	1199.76016	-0.30911	-0.00018574	0.067858	4.0775E-05	-0.24125	-0.00014496	600.8871471450595	149.62	1.9011	149.64	148.11	150.01	0.01825					235	68	4	0	0	0	0.73809	1	57813	57813		1.1933	0	1	1405700	+		25451	26241	18365	18501	24922	24922					0.16826797908038316
KKLVSVLKASQ	11	Unmodified	_KKLVSVLKASQ_					0	0	0			REV__ENST00000566515.5_1_15:43486293-43487036:+|nuORF	REV__ENST00000566515.5_1_15:43486293-43487036:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	601.287109375	2	600.887355	1199.76016	-0.30911	-0.00018574	0.067858	4.0775E-05	-0.24125	-0.00014496	600.8871471450595	149.62	1.9011	149.64	148.11	150.01	0.01825					235	68	4	0	0	0	1.001	1	58107	58107		1.1933	0	1	1405700	+		25452	26241	18365	18501	24923	24923					0.16826797908038316
KKLYRDVMV	9	Unmodified	_KKLYRDVMV_					0	0	0		ZNF614|p.N31K|1|0.53|ENSG00000142556|chr19:52018417-52018417|G/T|missense_variant	ZNF614|p.N31K|1|0.53|ENSG00000142556|chr19:52018417-52018417|G/T|missense_variant	ZNF614|p.N31K|1|0.53|ENSG00000142556|chr19:52018417-52018417|G/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	384.2860412597656	3	384.55836	1150.65325	-0.69159	-0.00026596	0.25961	9.9833E-05	-0.43198	-0.00016612	384.5583210943618	36.799	1.1201	37.57	37.308	38.429	0.7709					31	18	3	0	0	0	0.64808	1	13780	13780		11.495	3.0504	1	10746000			25453	30234	18366	18502	24924	24924					0.08394924421986616
KKMHRRMRWH	10	Unmodified	_KKMHRRMRWH_					0	0	0			REV__ENST00000511465.1_1_4:185263030-185268908:-|nuORF	REV__ENST00000511465.1_1_4:185263030-185268908:-|nuORF	MSMS	A375_MHC_IP_R1	1	733.7267456054688	2	733.398241	1464.78193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.4	1	144.4	143.9	144.9	0								0	0	0	0.15628	1	55375	55375		0.45834	0.10771	1		+		25454	25615	18367	18503	24925	24925					0.06813000903980537
KKMKQENREIY	11	Unmodified	_KKMKQENREIY_					0	0	0			REV__nc|ENSG00000135241|Q9NP80-3|PNPLA8	REV__nc|ENSG00000135241|Q9NP80-3|PNPLA8	MULTI-MSMS	A375_MHC_IP_R2	2	489.996826171875	3	489.597654	1465.77113	-0.57501	-0.00028152	-0.7093	-0.00034727	-1.2843	-0.0006288	489.5973985804619	30.617	0.60518	31.335	31.064	31.669	0.71857					17	7	3	0	0	0	0.73354	2	10801	10727;10801		5.5233	0.72449	1	7702500	+		25455	18833	18368	18504	24926;24927	24927					0.05687832220041855
KKNEISKME	9	Unmodified	_KKNEISKME_					0	0	0		tr|U7SVE2|U7SVE2_FUSNUPASdomainS-boxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01227PE=4SV=1	tr|U7SVE2|U7SVE2_FUSNUPASdomainS-boxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01227PE=4SV=1	tr|U7SVE2|U7SVE2_FUSNUPASdomainS-boxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01227PE=4SV=1	MSMS	A375_MHC_IP_R2	2	369.4446716308594	3	369.533991	1105.58014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.437	1	27.097	26.597	27.597	0.65992								0	0	0	0.15486	1	8934	8934		7.1017	0.47135	1				25456	29792	18369	18505	24928	24928					0.03157750908712842
KKNIKEKKP	9	Unmodified	_KKNIKEKKP_					0	0	0			REV__tr|U7STM1|U7STM1_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01537PE=4SV=1	REV__tr|U7STM1|U7STM1_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01537PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	557.0804443359375	2	556.861141	1111.70773	-0.57721	-0.00032143	0.028789	1.6032E-05	-0.54842	-0.00030539	556.8609287139734	149.7	1.4507	149.72	148.56	150.01	0.01825					154	56	3	0	0	0	0.81645	1	57874	57874		0.6015	0.14316	1	510160	+		25457	28498	18370	18506	24929	24929					0.15634259565058528
KKNIKYIKV	9	Unmodified	_KKNIKYIKV_					0	0	0		tr|U7SMU1|U7SMU1_FUSNUHelix-turn-helixdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01824PE=4SV=1	tr|U7SMU1|U7SMU1_FUSNUHelix-turn-helixdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01824PE=4SV=1	tr|U7SMU1|U7SMU1_FUSNUHelix-turn-helixdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01824PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	378.9332580566406	3	378.585015	1132.73321	0.89195	0.00033768	-2.5284	-0.00095721	-1.6364	-0.00061953	378.58480879664074	44.859	0.86142	44.859	44.523	45.384	0					45	16	4	0	0	0	0.10622	1	15766	15766		49.554	3.8144	1	25740000			25458	29536	18371	18507	24930	24930					0.172157340874719
KKNKEDYKL	9	Unmodified	_KKNKEDYKL_					0	0	0			REV__nc|ENSG00000148842|Q9H8M5-2|CNNM2	REV__nc|ENSG00000148842|Q9H8M5-2|CNNM2	MULTI-MSMS	A375_MHC_IP_R1	1	389.62432861328125	3	389.224034	1164.65027	0.35416	0.00013785	-0.021155	-8.234E-06	0.33301	0.00012961	389.22401815537035	51.674	0.4561	51.674	51.373	51.829	0					19	8	3	0	0	0	0.73141	1	18390	18390		4.1895	0.60244	1	2125000	+		25459	19650	18372	18508	24931	24931					0.07453372568852501
KKNKPLNEEK	10	Unmodified	_KKNKPLNEEK_					0	0	0		ENST00000274056.11_1_4:164448063-164448210:-|nuORF	ENST00000274056.11_1_4:164448063-164448210:-|nuORF	ENST00000274056.11_1_4:164448063-164448210:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	410.59503173828125	3	409.906705	1226.69829	-0.30807	-0.00012628	-0.18009	-7.382E-05	-0.48816	-0.0002001	410.24093699261937	20.219	0.55925	20.829	20.449	21.008	0.61029					12	10	2	0	0	0	0.93873	1	6186	6186		5.0475	1.4605	1	1136400			25460	10392	18373	18509	24932	24932					0.09400446488893976
KKNMFFSNLK	10	Unmodified	_KKNMFFSNLK_					0	0	0		ENST00000422653.1_1_9:88371036-88385349:+|nuORF	ENST00000422653.1_1_9:88371036-88385349:+|nuORF	ENST00000422653.1_1_9:88371036-88385349:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	419.2957763671875	3	419.565514	1255.67471	-0.38371	-0.00016099	-0.090216	-3.7852E-05	-0.47393	-0.00019884	419.5652765814836	26.803	0.30537	27.463	27.212	27.517	0.65992					8	5	2	0	0	0	0.93733	1	9030	9030		8.4443	0.96724	1	1413800			25461	11748	18374	18510	24933	24933					0.05710309450728346
KKNQGLRREI	10	Unmodified	_KKNQGLRREI_					0	0	0		nc|ENSG00000160460|Q9H254-3|SPTBN4;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-5|SPTBN4;nc|ENSG00000160460|Q9H254-4|SPTBN4;ENST00000596900.5_1_19:41036434-41060733:+|nuORF	nc|ENSG00000160460|Q9H254-3|SPTBN4	nc|ENSG00000160460|Q9H254-3|SPTBN4	MULTI-SECPEP	A375_MHC_IP_R2	2	413.9576721191406	3	414.586077	1240.7364	-0.32731	-0.0001357	2.4045	0.00099686	2.0772	0.00086116	414.58739279322725	20.366	0.30693	20.977	20.752	21.059	0.61029					9	5	3	0	0	0	0.94651	1	6331	6331		3.5871	1.9948	1	719440			25462	6422	18375	18511	24934	24934					0.12566377194207234
KKNRILALPD	10	Unmodified	_KKNRILALPD_					0	0	0			REV__ENST00000405995.5_1_9:134371267-134371525:+|nuORF	REV__ENST00000405995.5_1_9:134371267-134371525:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	390.28436279296875	3	389.91179	1166.71354	-0.20359	-7.9382E-05	0.20588	8.0274E-05	0.0022883	8.9223E-07	389.9117966468624	29.63	1.5044	29.63	29.353	30.857	0					64	29	3	0	0	0	0.71455	1	9715	9715		5.7834	0.38072	1	23564000	+		25463	24439	18376	18512	24935	24935					0.1368535807673652
KKNRKKMTKR	10	Unmodified	_KKNRKKMTKR_					0	0	0			REV__nc|ENSG00000067840|Q76G19-2|PDZD4	REV__nc|ENSG00000067840|Q76G19-2|PDZD4	MULTI-SECPEP	A375_MHC_IP_R1	1	658.8129272460938	2	659.416623	1316.81869	-0.85066	-0.00056094	-1.2438	-0.00082021	-2.0945	-0.0013811	659.4154874215244	147.7	0.17178	147.7	147.64	147.81	0					23	15	2	0	0	0	0.95034	1	56407	56407		0.40072	0	1	120240	+		25464	16535	18377	18513	24936	24936					0.17295576001492918
KKNSNQIVVPT	11	Unmodified	_KKNSNQIVVPT_					0	0	0			REV__nc|ENSG00000177888|Q5SVQ8-2|ZBTB41	REV__nc|ENSG00000177888|Q5SVQ8-2|ZBTB41	MULTI-MSMS	A375_MHC_IP_R1	1	614.7863159179688	2	614.356419	1226.69829	-0.69398	-0.00042635	-0.10115	-6.2142E-05	-0.79513	-0.00048849	614.3561925730725	149.42	1.6439	149.42	148.36	150	0					122	55	3	0	0	0	0.73795	4	56899	56899;56931;57080;57111		1.3295	0.13619	1	329580	+		25465	21474	18378	18514	24937;24938;24939;24940	24937					0.09400446488893976
KKNSNQIVVPT	11	Unmodified	_KKNSNQIVVPT_					0	0	0			REV__nc|ENSG00000177888|Q5SVQ8-2|ZBTB41	REV__nc|ENSG00000177888|Q5SVQ8-2|ZBTB41	MULTI-MSMS	A375_MHC_IP_R2	2	614.7554931640625	2	614.356419	1226.69829	-0.39135	-0.00024043	-0.4706	-0.00028912	-0.86195	-0.00052955	614.3560521575944	149.65	1.6195	149.67	148.39	150.01	0.01825					113	60	2	0	0	0	0.73795	1	57884	57884		1.3295	0	1	362470	+		25466	21474	18378	18514	24941	24941					0.09400446488893976
KKNWRRRKRR	10	Unmodified	_KKNWRRRKRR_					0	0	0		nc|ENSG00000137309|P17096-3|HMGA1	nc|ENSG00000137309|P17096-3|HMGA1	nc|ENSG00000137309|P17096-3|HMGA1	MULTI-MSMS	A375_MHC_IP_R1	1	742.8684692382812	2	742.468901	1482.92325	-0.7465	-0.00055425	0.47204	0.00035048	-0.27446	-0.00020378	742.4687593965893	130.23	0.25415	130.23	130.16	130.41	0					8	4	2	0	0	0	0.72658	1	50136	50136		0.40072	0.093686	1	13533000			25467	14626	18379	18515	24942	24942					0.20110458593057956
KKNWRRRKRR	10	Unmodified	_KKNWRRRKRR_					0	0	0		nc|ENSG00000137309|P17096-3|HMGA1	nc|ENSG00000137309|P17096-3|HMGA1	nc|ENSG00000137309|P17096-3|HMGA1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	742.468901	1482.92325	-0.7465	-0.00055425	0.47204	0.00035048	-0.27446	-0.00020378	742.4687593965893	130.23	0.25415	130.23	130.16	130.41	0	0.092204	-0.00032084	NaN	0.40072	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13533000			25468	14626	18379	18515							0.20110458593057956
KKPELCYGW	9	Unmodified	_KKPELCYGW_					0	0	0			REV__ENSG00000131187|ENST00000253496|F12	REV__ENSG00000131187|ENST00000253496|F12	MULTI-SECPEP	A375_MHC_IP_R1	1	562.6804809570312	2	562.283877	1122.5532	-0.41856	-0.00023535	-0.97934	-0.00055066	-1.3979	-0.00078602	562.2833500528383	52.192	0.96653	52.192	51.676	52.643	0					40	18	3	0	0	0	0.35487	1	18619	18619		43.858	11.553	1	9223500	+		25469	18594	18380	18516	24943	24943					-0.0031731291180676635
KKPKEQQKL	9	Unmodified	_KKPKEQQKL_					0	0	0		ENSG00000136631|ENST00000644510|VPS45;nc|ENSG00000136631|Q9NRW7-2|VPS45;ENST00000477558.1_1_1:150049710-150054979:+|nuORF	ENSG00000136631|ENST00000644510|VPS45	ENSG00000136631|ENST00000644510|VPS45	MULTI-MSMS	A375_MHC_IP_R1	1	376.6360778808594	3	376.236274	1125.68699	-0.031136	-1.1715E-05	0.058907	2.2163E-05	0.027771	1.0448E-05	376.236196121223	29.716	1.6557	29.716	29.403	31.059	0					56	32	2	0	0	0	0.4875	1	9341	9341		20.415	5.1661	1	16284000			25470	4803	18381	18517	24944	24944					0.12917669185435443
KKPNLILNV	9	Unmodified	_KKPNLILNV_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY;ENST00000588779.1_1_17:40024065-40026676:-|nuORF	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-SECPEP	A375_MHC_IP_R1	1	520.237060546875	2	519.837134	1037.65972	-0.53483	-0.00027802	0.065164	3.3875E-05	-0.46966	-0.00024415	519.837092051902	50.351	0.40903	50.351	50.101	50.51	0					13	7	2	0	0	0	0.67483	1	17858	17858		14.838	1.7958	1	1985400			25471	4335	18382	18518	24945	24945					0.1423918564505584
KKPNLILNV	9	Unmodified	_KKPNLILNV_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY;ENST00000588779.1_1_17:40024065-40026676:-|nuORF	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-SECPEP	A375_MHC_IP_R2	2	520.2362060546875	2	519.837134	1037.65972	-0.90015	-0.00046793	-0.0017512	-9.1034E-07	-0.9019	-0.00046884	519.8369759243203	49.221	0.40417	49.978	49.843	50.247	0.75737					11	7	2	0	0	0	0.60917	1	18543	18543		13.906	5.1606	1	1852100			25472	4335	18382	18518	24946	24946					0.1423918564505584
KKPSAKPLR	9	Unmodified	_KKPSAKPLR_					0	0	0		ENSG00000137460|ENST00000511601|FHDC1	ENSG00000137460|ENST00000511601|FHDC1	ENSG00000137460|ENST00000511601|FHDC1	MULTI-SECPEP	A375_MHC_IP_R1	1	513.0543823242188	2	512.834926	1023.6553	-0.84048	-0.00043103	0.21191	0.00010867	-0.62858	-0.00032236	512.8347305759066	149.93	1.2463	149.93	148.76	150	0					110	47	3	0	0	0	0.81254	1	56863	56863		2.0598	1.2661	1	236050			25473	4883	18383	18519	24947	24947					0.14441721222124215
KKQKLKKL	8	Unmodified	_KKQKLKKL_					0	0	0			REV__tr|U7STQ9|U7STQ9_FUSNUTrmHfamilyRNAmethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01153PE=4SV=1	REV__tr|U7STQ9|U7STQ9_FUSNUTrmHfamilyRNAmethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01153PE=4SV=1	MSMS	A375_MHC_IP_R1	1	507.27740478515625	2	507.363319	1012.71209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.953	1	87.953	87.453	88.453	0								0	0	0	0.16876	1	32281	32281		0.69038	0	1		+		25474	28501	18384	18520	24948	24948					0.20623768778659723
KKQLQGASW	9	Unmodified	_KKQLQGASW_					0	0	0		ENSG00000186496|ENST00000589332|ZNF396;nc|ENSG00000186496|Q96N95-3|ZNF396;nc|ENSG00000186496|Q96N95-2|ZNF396	ENSG00000186496|ENST00000589332|ZNF396	ENSG00000186496|ENST00000589332|ZNF396	MULTI-MSMS	A375_MHC_IP_R2	2	523.6919555664062	2	523.293091	1044.57163	-1.1671	-0.00061072	-0.4482	-0.00023454	-1.6153	-0.00084526	523.292788325726	28.646	0.25005	29.345	29.234	29.484	0.69872					8	4	2	0	0	0	0.69674	1	9945	9945		7.2892	0	1	14101000			25475	8753	18385	18521	24949	24949					0.05112565054423612
KKQQREKEKIK	11	Unmodified	_KKQQREKEKIK_					0	0	0			REV__nc|ENSG00000104131|O75822-2|EIF3J	REV__nc|ENSG00000104131|O75822-2|EIF3J	MULTI-MSMS	A375_MHC_IP_R2	2	722.3427734375	2	721.943724	1441.8729	-0.58915	-0.00042533	0.20862	0.00015061	-0.38053	-0.00027472	721.943666874182	149.07	2.4803	149.09	147.53	150.01	0.018707					294	106	5	0	0	0	0.73924	1	57890	57890		0.35063	0	1	2765700	+		25476	17304	18386	18522	24950	24950					0.16963446634076718
KKQVVHKKL	9	Unmodified	_KKQVVHKKL_					0	0	0			REV__ZNF114|p.R352K|1|0.21|ENSG00000178150|chr19:48286679-48286679|G/A|missense_variant	REV__ZNF114|p.R352K|1|0.21|ENSG00000178150|chr19:48286679-48286679|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	370.5854187011719	3	369.916876	1106.7288	0.045672	1.6895E-05	-1.9802	-0.00073252	-1.9345	-0.00071562	370.2509087942356	58.055	0.45239	58.803	58.528	58.98	0.74895					11	8	2	0	0	0	0.81858	1	22013	22013		0.26902	0	1	765230	+		25477	29025	18387	18523	24951	24951					0.179702696646018
KKRAGAQQQRR	11	Unmodified	_KKRAGAQQQRR_					0	0	0			REV__RBM33|p.E1103Gfs*12|1|0.21|ENSG00000184863|chr7:155766588-155766588|A/-|frameshift_variant	REV__RBM33|p.E1103Gfs*12|1|0.21|ENSG00000184863|chr7:155766588-155766588|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	443.332275390625	3	442.932359	1325.77525	-0.30259	-0.00013403	0.55735	0.00024687	0.25476	0.00011284	442.9325434576489	130.82	1.0187	130.82	130.11	131.13	0					48	19	3	0	0	0	0.73891	1	50416	50416		0.40827	0.40827	1	73431000	+		25478	21842	18388	18524	24952	24952					0.12539102548589653
KKRFALLLK	9	Unmodified	_KKRFALLLK_					0	0	0		ENST00000422956.6_1_2:113993137-114016997:+|nuORF;ENST00000451179.5_1_2:113993110-114020957:+|nuORF;ENST00000333145.9_1_2:113993130-114016997:+|nuORF	ENST00000422956.6_1_2:113993137-114016997:+|nuORF	ENST00000422956.6_1_2:113993137-114016997:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	373.2780456542969	3	372.925371	1115.75428	0.41539	0.00015491	-0.50417	-0.00018802	-0.088779	-3.3108E-05	372.9251434212473	30.538	0.35321	31.256	31.064	31.417	0.71857					9	6	2	0	0	0	0.73141	1	10734	10734		4.1895	0	1	1381700			25479	10785	18389	18525	24953	24953					0.20103744187031225
KKRIHRKRHRF	11	Unmodified	_KKRIHRKRHRF_					0	0	0			REV__ENSG00000186496|ENST00000589332|ZNF396	REV__ENSG00000186496|ENST00000589332|ZNF396	MULTI-SECPEP	A375_MHC_IP_R2	2	782.2864990234375	2	781.492376	1560.9702	-0.92576	-0.00072347	1.5282	0.0011942	0.6024	0.00047077	781.9947828685742	126.16	0.25375	126.46	126.28	126.53	0.2951					5	4	2	0	0	0	1.0015	1	49244	49244		0	0	1	3489600	+		25480	21974	18390	18526	24954	24954					0.21215318144231787
KKRKHGHR	8	Unmodified	_KKRKHGHR_					0	0	0			REV__CCNL1|p.R471C|1|0.06|ENSG00000163660|chr3:157148411-157148411|G/A|missense_variant	REV__CCNL1|p.R471C|1|0.06|ENSG00000163660|chr3:157148411-157148411|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	524.4057006835938	2	523.825758	1045.63696	-0.84484	-0.00044255	0.022847	1.1968E-05	-0.822	-0.00043058	523.825647309372	149.62	0.94484	149.62	149.06	150	0					78	41	2	0	0	0	0.972	1	56995	56995		0.69038	0.69038	1	111130	+		25481	15606	18391	18527	24955	24955					0.11597024090792729
KKRKHGHR	8	Unmodified	_KKRKHGHR_					0	0	0			REV__CCNL1|p.R471C|1|0.06|ENSG00000163660|chr3:157148411-157148411|G/A|missense_variant	REV__CCNL1|p.R471C|1|0.06|ENSG00000163660|chr3:157148411-157148411|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	523.825758	1045.63696	-0.34534	-0.0001809	0.078757	4.1255E-05	-0.26658	-0.00013964	523.8255348204389	149.81	0.90335	149.83	149.11	150.01	0.01825	0.1035	3.255E-05	NaN	0.69038	82	45	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93823	+		25482	15606	18391	18527							0.11597024090792729
KKRKHQHHKK	10	Unmodified	_KKRKHQHHKK_					0	0	0		ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	MULTI-SECPEP	A375_MHC_IP_R1	1	678.3174438476562	2	677.918178	1353.8218	-0.98693	-0.00066906	-0.45647	-0.00030945	-1.4434	-0.00097851	677.9176215897894	149.19	2.4281	149.19	147.58	150	0					291	91	4	0	0	0	0.94862	1	56990	56990		1.6526	1.1943	1	2718100			25483	3616	18392	18528	24956	24956					0.1590458717053025
KKRKKDRKKQR	11	Unmodified	_KKRKKDRKKQR_					0	0	0		nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;ENSG00000010165|ENST00000361735|METTL13;ENST00000478330.1_1_1:171757000-171759833:+|nuORF;nc|ENSG00000010165|Q8N6R0-3|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	MULTI-SECPEP	A375_MHC_IP_R2	2	501.0649719238281	3	500.330342	1497.9692	-0.38345	-0.00019185	0.42461	0.00021244	0.041154	2.0591E-05	500.3303004720342	149.09	1.3551	149.11	148.29	149.64	0.018707					69	31	3	0	0	0	1.0015	1	57807	57807		0	0	1	381880			25484	974	18393	18529	24957	24957					0.24013058984678537
KKRKKDRKKQR	11	Unmodified	_KKRKKDRKKQR_					0	0	0		nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;ENSG00000010165|ENST00000361735|METTL13;ENST00000478330.1_1_1:171757000-171759833:+|nuORF;nc|ENSG00000010165|Q8N6R0-3|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	500.330342	1497.9692	-0.7341	-0.00036729	0.68633	0.00034339	-0.047771	-2.3901E-05	500.33048550009653	149.05	1.8904	149.05	147.83	149.72	0	-0.032673	0.00015863	NaN	0	98	43	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348030			25485	974	18393	18529							0.24013058984678537
KKRKKNDPPA	10	Unmodified	_KKRKKNDPPA_					0	0	0			REV__nc|ENSG00000204385|Q53GD3-2|SLC44A4	REV__nc|ENSG00000204385|Q53GD3-2|SLC44A4	MSMS	A375_MHC_IP_R2	2	591.7494506835938	2	591.359296	1180.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.66	1	144.68	144.18	145.18	0.024414								0	0	0	0.15596	1	56499	56499		1.4819	0	1		+		25486	22511	18394	18530	24958	24958					0.12091589791225488
KKRKRGWKKRL	11	Unmodified	_KKRKRGWKKRL_					0	0	0			REV__ENST00000361720.9_1_1:27220846-27223967:-|nuORF	REV__ENST00000361720.9_1_1:27220846-27223967:-|nuORF	MSMS	A375_MHC_IP_R2	2	742.7764282226562	2	742.494053	1482.97355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.1	1	144.12	143.62	144.62	0.024414								0	0	0	0.1636	1	56296	56296		0	0	1		+		25487	23920	18395	18531	24959	24959					0.2513856819823559
KKRKRKYELRY	11	Unmodified	_KKRKRKYELRY_					0	0	0		ENSG00000153157|ENST00000283141|SYCP2L	ENSG00000153157|ENST00000283141|SYCP2L	ENSG00000153157|ENST00000283141|SYCP2L	MULTI-MSMS	A375_MHC_IP_R1	1	523.326904296875	3	523.322964	1566.94706	-0.39912	-0.00020887	-0.6411	-0.0003355	-1.0402	-0.00054437	523.6568531409663	89.094	0.15063	89.094	88.97	89.12	0					4	2	2	0	0	0	0.73807	1	32713	32713		1.2148	1.0555	1	857580			25488	6012	18396	18532	24960	24960					0.1862683451624889
KKRKRRKRLPH	11	Unmodified	_KKRKRRKRLPH_					0	0	0			REV__ENSG00000174808|ENST00000395743|BTC	REV__ENSG00000174808|ENST00000395743|BTC	MSMS	A375_MHC_IP_R1	1	751.88818359375	2	752.002577	1501.9906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124	1	124	123.5	124.5	0								0	0	0	0.1636	1	46500	46500		0	0	1		+		25489	21304	18397	18533	24961	24961					0.2596848880405105
KKRKRRLILW	10	Unmodified	_KKRKRRLILW_					0	0	0		SNX33|p.E304K|1|0.14|ENSG00000173548|chr15:75650012-75650012|G/A|missense_variant	SNX33|p.E304K|1|0.14|ENSG00000173548|chr15:75650012-75650012|G/A|missense_variant	SNX33|p.E304K|1|0.14|ENSG00000173548|chr15:75650012-75650012|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	698.8270263671875	2	698.972422	1395.93029	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.86	1	100.62	100.12	101.12	0.76278								0	0	0	0.15628	1	37876	37876		0.45834	0.10771	1				25490	29215	18398	18534	24962	24962					0.24816378420973706
KKRLIRNLKRI	11	Unmodified	_KKRLIRNLKRI_					0	0	0		tr|U7SQH7|U7SQH7_FUSNUProteinkinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01642PE=4SV=1	tr|U7SQH7|U7SQH7_FUSNUProteinkinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01642PE=4SV=1	tr|U7SQH7|U7SQH7_FUSNUProteinkinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01642PE=4SV=1	MSMS	A375_MHC_IP_R1	1	719.4965209960938	2	719.496262	1436.97797	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.983	1	92.983	92.483	93.483	0								0	0	0	0.1636	1	34176	34176		0	0	1				25491	29589	18399	18535	24963	24963					0.2769603262115652
KKRLKKKGGE	10	Unmodified	_KKRLKKKGGE_					0	0	0		ENSG00000114124|ENST00000682958|GRK7	ENSG00000114124|ENST00000682958|GRK7	ENSG00000114124|ENST00000682958|GRK7	MSMS	A375_MHC_IP_R2	2	586.38427734375	2	586.385314	1170.75608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.076	1	22.695	22.195	23.195	0.61932								0	0	0	0.15591	1	6992	6992		1.6526	1.1943	1				25492	3200	18400	18536	24964	24964					0.17752753204990768
KKRLSDVAIF	10	Unmodified	_KKRLSDVAIF_					0	0	0			REV__tr|U7T422|U7T422_FUSNUPeptidyl-tRNAhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pthPE=3SV=1	REV__tr|U7T422|U7T422_FUSNUPeptidyl-tRNAhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pthPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	589.4472045898438	2	588.858598	1175.70264	-0.15421	-9.0809E-05	-0.095591	-5.629E-05	-0.2498	-0.0001471	588.8585099808333	71.185	1.8259	71.185	70.902	72.728	0					88	35	5	0	0	0	0.67901	1	26190	26190		17.113	0.96379	1	65791000	+		25493	28791	18401	18537	24965	24965					0.12181955702453706
KKRLYYREKKY	11	Unmodified	_KKRLYYREKKY_					0	0	0		ENST00000499638.6_1_12:121661214-121671021:+|nuORF;ENST00000543318.5_1_12:121659934-121671349:+|nuORF;nc|ENSG00000135124|Q99571-3|P2RX4;ENSG00000135124|ENST00000337233|P2RX4;nc|ENSG00000135124|Q99571-2|P2RX4	ENST00000499638.6_1_12:121661214-121671021:+|nuORF	ENST00000499638.6_1_12:121661214-121671021:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	525.708740234375	3	525.643704	1573.90928	-0.79693	-0.0004189	0.73631	0.00038704	-0.060623	-3.1866E-05	525.6441067784408	137.42	1.6862	137.42	137.13	138.81	0					51	32	2	0	0	0	1.0014	1	53149	53149		0.45452	0.45452	1	2460900			25494	4650	18402	18538	24966	24966					0.1452832353074882
KKRNRQKERQR	11	Unmodified	_KKRNRQKERQR_					0	0	0		ENST00000310123.7_1_19:35625842-35625896:-|nuORF	ENST00000310123.7_1_19:35625842-35625896:-|nuORF	ENST00000310123.7_1_19:35625842-35625896:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	509.0302734375	3	509.641468	1525.90257	-0.55572	-0.00028322	-0.0030511	-1.555E-06	-0.55877	-0.00028477	509.97552065571864	142.47	0.25351	142.51	142.28	142.53	0.030731					5	4	2	0	0	0	1.0015	1	55648	55648		0.40827	0	1	589590			25495	10618	18403	18539	24967	24967					0.1606582342276397
KKRRQLYRYPV	11	Unmodified	_KKRRQLYRYPV_					0	0	0			REV__ENST00000471987.1_1_1:207956671-207959028:+|nuORF	REV__ENST00000471987.1_1_1:207956671-207959028:+|nuORF	MSMS	A375_MHC_IP_R2	2	753.9551391601562	2	753.954427	1505.8943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.18	1	125.48	124.98	125.98	0.2951								0	0	0	0.16334	1	48691	48691		1.3295	0.25807	1		+		25496	18004	18404	18540	24968	24968					0.16158876453437188
KKRRRRRKESF	11	Unmodified	_KKRRRRRKESF_					0	0	0		ENSG00000164626|ENST00000359534|KCNK5	ENSG00000164626|ENST00000359534|KCNK5	ENSG00000164626|ENST00000359534|KCNK5	MULTI-SECPEP	A375_MHC_IP_R2	2	517.066650390625	3	516.321958	1545.94404	-0.57544	-0.00029711	0.37083	0.00019147	-0.20461	-0.00010565	516.3217290860855	149.79	0.16919	149.81	149.72	149.89	0.01825					17	13	2	0	0	0	1.0015	1	58144	58144		0	0	1	51134			25497	6856	18405	18541	24969	24969					0.19291004182105098
KKRRRRRKLQH	11	Unmodified	_KKRRRRRKLQH_					0	0	0			REV__ENSG00000148343|ENST00000684074|MIGA2;REV__nc|ENSG00000148343|Q7L4E1-2|MIGA2	REV__ENSG00000148343|ENST00000684074|MIGA2	MSMS	A375_MHC_IP_R2	2	781.2446899414062	2	781.508558	1561.00256	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.054	1	42.828	42.328	43.328	0.77451								0	0	0	0.1636	1	15633	15633		0	0	1		+		25498	19623;27282	18406	18542	24970	24970					0.24450105547248313
KKRRTEYGSN	10	Unmodified	_KKRRTEYGSN_					0	0	0			REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E;REV__nc|ENSG00000005483|Q8IZD2-6|KMT2E;REV__KMT2E|p.D495Rfs*20|1|0.13|ENSG00000005483|chr7:105090125-105090126|-/A|frameshift_variant	REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E	MULTI-SECPEP	A375_MHC_IP_R2	2	413.6554870605469	3	413.558187	1237.65273	-0.30981	-0.00012813	-1.1661	-0.00048225	-1.4759	-0.00061038	413.5578735749788	20.306	0.66076	20.916	20.549	21.21	0.61029					20	12	2	0	0	0	0.93578	1	6259	6259		5.7834	0	1	1898800	+		25499	16123;27088;26867	18407	18543	24971	24971					0.043412210265159956
KKRTEIVEH	9	Unmodified	_KKRTEIVEH_					0	0	0			REV__nc|ENSG00000084710|Q9Y2G0-2|EFR3B	REV__nc|ENSG00000084710|Q9Y2G0-2|EFR3B	MULTI-MSMS	A375_MHC_IP_R1	1	570.7297973632812	2	570.330205	1138.64586	-0.65358	-0.00037276	-0.068469	-3.905E-05	-0.72205	-0.00041181	570.330020412183	149.65	0.94484	149.65	149.06	150	0					71	41	2	0	0	0	0.77154	1	57116	57116		0.6015	0	1	154310	+		25500	16827	18408	18544	24972	24972					0.08207908145936926
KKRYLFRFFKA	11	Unmodified	_KKRYLFRFFKA_					0	0	0		PRPF8|p.S475F|1|0.34|ENSG00000174231|chr17:1679192-1679192|G/A|missense_variant	PRPF8|p.S475F|1|0.34|ENSG00000174231|chr17:1679192-1679192|G/A|missense_variant	PRPF8|p.S475F|1|0.34|ENSG00000174231|chr17:1679192-1679192|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	502.03424072265625	3	501.969751	1502.88742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.51	1	135.51	135.01	136.01	0								0	0	0	0.16337	1	52234	52234		0.40827	0	1				25501	15235	18409	18545	24973	24973					0.15609563572866136
KKSAKPAAG	9	Unmodified	_KKSAKPAAG_					0	0	0		SIGLEC9|p.R379K|1|0.48|ENSG00000129450|chr19:51128443-51128443|G/A|missense_variant	SIGLEC9|p.R379K|1|0.48|ENSG00000129450|chr19:51128443-51128443|G/A|missense_variant	SIGLEC9|p.R379K|1|0.48|ENSG00000129450|chr19:51128443-51128443|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	429.29095458984375	2	429.263802	856.513051	-0.47428	-0.00020359	0.13118	5.6312E-05	-0.3431	-0.00014728	429.26387019102594	41.129	0.30467	41.904	41.743	42.047	0.77451					8	5	2	0	0	0	0.68046	1	15195	15195		8.7454	0.15213	1	1486600			25502	29160	18410	18546	24974	24974					0.07905508479939272
KKSDYIKLY	9	Unmodified	_KKSDYIKLY_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000415545.2_1_1:92108345-92109332:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-SECPEP	A375_MHC_IP_R1	1	386.9569091796875	3	386.557013	1156.64921	0.052853	2.0431E-05	-2.54	-0.00098184	-2.4871	-0.00096141	386.55701619636795	32.401	0.76108	32.401	32.075	32.836	0					50	14	6	0	0	0	0.56537	1	10444	10444		16.566	7.5896	1	4541600			25503	7095	18411	18547	24975	24975					0.07715158199948746
KKSEENTLAK	10	Unmodified	_KKSEENTLAK_					0	0	0			REV__tr|U7SST1|U7SST1_FUSNUUvrABCsystemproteinCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrCPE=3SV=1	REV__tr|U7SST1|U7SST1_FUSNUUvrABCsystemproteinCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrCPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	575.2352294921875	2	574.319502	1146.62445	-0.26893	-0.00015445	-0.18783	-0.00010788	-0.45676	-0.00026233	574.319255677207	129	2.4323	129.24	128.04	130.48	0.23947					111	47	4	0	0	0	0.71693	1	50643	50643		8.1555	8.1555	1	17950000	+		25504	28448	18412	18548	24976	24976					0.05700478326571101
KKSEKEIKQLE	11	Unmodified	_KKSEKEIKQLE_					0	0	0		ENSG00000047662|ENST00000265018|FAM184B	ENSG00000047662|ENST00000265018|FAM184B	ENSG00000047662|ENST00000265018|FAM184B	MULTI-MSMS	A375_MHC_IP_R2	2	680.8262329101562	2	680.395741	1358.77693	-0.44773	-0.00030463	-0.41546	-0.00028267	-0.86318	-0.00058731	680.3951950942019	149.27	1.9369	149.29	148.07	150.01	0.01825					193	69	4	0	0	0	0.73809	1	57905	57905		1.1933	1.1933	1	855650			25505	1207	18413	18549	24977	24977					0.11189254003352289
KKSKKFKRILI	11	Unmodified	_KKSKKFKRILI_					0	0	0			REV__ENST00000309703.10_2_4:113181974-113186924:+|nuORF	REV__ENST00000309703.10_2_4:113181974-113186924:+|nuORF	MSMS	A375_MHC_IP_R1	1	694.6875610351562	2	694.976839	1387.93913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.28	1	107.28	106.78	107.78	0								0	0	0	0.1636	1	39366	39366		0	0	1		+		25506	23490	18414	18550	24978	24978					0.26067307266816897
KKSKKLIKAIY	11	Unmodified	_KKSKKLIKAIY_					0	0	0			REV__tr|U7SV28|U7SV28_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrAPE=3SV=1	REV__tr|U7SV28|U7SV28_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrAPE=3SV=1	MSMS	A375_MHC_IP_R2	2	660.67578125	2	660.442298	1318.87004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.463	1	25.106	24.606	25.606	0.64368								0	0	0	0.16353	1	8038	8038		0.35063	0.35063	1		+		25507	28580	18415	18551	24979	24979					0.22336223247225462
KKSLKSYSSR	10	Unmodified	_KKSLKSYSSR_					0	0	0		ENSG00000153157|ENST00000283141|SYCP2L	ENSG00000153157|ENST00000283141|SYCP2L	ENSG00000153157|ENST00000283141|SYCP2L	MULTI-MSMS	A375_MHC_IP_R1	1	592.7737426757812	2	592.343312	1182.67207	-0.70471	-0.00041743	0.46315	0.00027434	-0.24156	-0.00014309	592.3433393022315	149.67	1.2463	149.67	148.76	150	0					109	47	3	0	0	0	0.71944	1	56955	56955		3.5965	2.1146	1	227150			25508	6012	18416	18552	24980	24980					0.08804177317415451
KKSMNGRMKQL	11	Unmodified	_KKSMNGRMKQL_					0	0	0		ENSG00000175087|ENST00000374269|PDIK1L	ENSG00000175087|ENST00000374269|PDIK1L	ENSG00000175087|ENST00000374269|PDIK1L	MULTI-SECPEP	A375_MHC_IP_R2	2	660.4669799804688	2	660.865574	1319.7166	-0.79854	-0.00052773	-2.8156	-0.0018607	-3.6142	-0.0023885	661.3651608646719	133.95	0.30502	134.11	133.85	134.16	0.16487					6	5	2	0	0	0	0.99738	1	52630	52630		5.2969	1.3525	1	2446000			25509	7933	18417	18553	24981	24981					0.06952541867599393
KKSNHVLKTH	10	Unmodified	_KKSNHVLKTH_					0	0	0			REV__tr|U7SHB2|U7SHB2_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02247PE=4SV=1	REV__tr|U7SHB2|U7SHB2_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02247PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	596.0906982421875	2	596.351471	1190.68839	-0.52534	-0.00031328	-2.0834	-0.0012425	-2.6088	-0.0015557	596.3504808783447	132.2	0.45847	132.39	132.15	132.61	0.18954					16	8	3	0	0	0	0.93594	1	51967	51967		4.897	2.1618	1	2809900	+		25510	28205	18418	18554	24982	24982					0.10067303274172446
KKSRSVHS	8	Unmodified	_KKSRSVHS_					0	0	0		HERC1|p.Q2262H|1|0.32|ENSG00000103657|chr15:63678129-63678129|C/G|missense_variant	HERC1|p.Q2262H|1|0.32|ENSG00000103657|chr15:63678129-63678129|C/G|missense_variant	HERC1|p.Q2262H|1|0.32|ENSG00000103657|chr15:63678129-63678129|C/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	464.6537170410156	2	464.769783	927.525013	-0.41254	-0.00019174	0.18759	8.7188E-05	-0.22495	-0.00010455	464.76979602484766	113.85	2.4366	114.56	113.72	116.16	0.70985					93	47	2	0	0	0	0.77797	1	42688	42688		2.3027	0	1	17548000			25511	14108	18419	18555	24983	24983					0.05835125223143223
KKSSDTLKLQ	10	Unmodified	_KKSSDTLKLQ_					0	0	0		nc|ENSG00000132613|Q765P7-2|MTSS2;nc|ENSG00000170873|O43312-4|MTSS1;ENSG00000132613|ENST00000338779|MTSS2;ENSG00000170873|ENST00000518547|MTSS1;nc|ENSG00000170873|O43312-5|MTSS1	nc|ENSG00000132613|Q765P7-2|MTSS2	nc|ENSG00000132613|Q765P7-2|MTSS2	MULTI-MSMS	A375_MHC_IP_R2	2	575.2352294921875	2	574.337695	1146.66084	-0.23302	-0.00013383	-3.4959	-0.0020078	-3.7289	-0.0021417	574.8359254936919	130.21	1.2644	130.43	129.64	130.91	0.21419					45	24	3	0	0	0	0.71361	1	51177	51177		6.2058	0	1	9922800			25512	4427	18420	18556	24984	24984					0.09337355223283339
KKSVRSRQI	9	Unmodified	_KKSVRSRQI_					0	0	0			REV__ENST00000380130.6_1_13:32977283-32978487:-|nuORF	REV__ENST00000380130.6_1_13:32977283-32978487:-|nuORF	MSMS	A375_MHC_IP_R1	1	367.96441650390625	3	367.899885	1100.67783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.887	1	23.887	23.387	24.387	0								0	0	0	0.15486	1	6652	6652		4.897	0.70751	1		+		25513	24210	18421	18557	24985	24985					0.13151320619772378
KKTCKKKKM	9	Unmodified	_KKTCKKKKM_					0	0	0		ENSG00000154144|ENST00000441174|TBRG1	ENSG00000154144|ENST00000441174|TBRG1	ENSG00000154144|ENST00000441174|TBRG1	MSMS	A375_MHC_IP_R2	2	561.8458251953125	2	561.846122	1121.67769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.78	1	18.376	17.876	18.876	0.59616								0	0	0	0.15486	1	5249	5249		0	0	1				25514	6064	18422	18558	24986	24986					0.12171861303863807
KKTIEWAEE	9	Unmodified	_KKTIEWAEE_					0	0	0		nc|ENSG00000165006|Q9NZ09-2|UBAP1;ENSG00000165006|ENST00000297661|UBAP1;nc|ENSG00000165006|Q9NZ09-3|UBAP1;nc|ENSG00000165006|Q9NZ09-4|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	378.5841369628906	3	378.532756	1132.57644	0.57156	0.00021636	-2.1872	-0.00082794	-1.6157	-0.00061158	378.86622872012197	21.358	0.20416	21.358	21.199	21.403	0					5	3	2	0	0	0	0.76642	1	5602	5602		12.873	2.0731	1	2343800			25515	6904	18423	18559	24987	24987					0.015454044065336348
KKTIEWAEE	9	Unmodified	_KKTIEWAEE_					0	0	0		nc|ENSG00000165006|Q9NZ09-2|UBAP1;ENSG00000165006|ENST00000297661|UBAP1;nc|ENSG00000165006|Q9NZ09-3|UBAP1;nc|ENSG00000165006|Q9NZ09-4|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	378.58392333984375	3	378.532756	1132.57644	-0.20278	-7.6759E-05	-0.533	-0.00020176	-0.73578	-0.00027852	378.53243587969274	20.066	0.91323	20.676	20.095	21.008	0.61029					31	17	3	0	0	0	0.78753	1	6317	6317		8.1555	8.1555	1	5965800			25516	6904	18423	18559	24988	24988					0.015454044065336348
KKTKKEQKTA	10	Unmodified	_KKTKKEQKTA_					0	0	0		ENSG00000140285|ENST00000267843|FGF7;ENST00000441829.2_9:44302237-44303615:+|nuORF;FGF7|p.G176E|1|0.35|ENSG00000140285|chr15:49484446-49484446|G/A|missense_variant	ENSG00000140285|ENST00000267843|FGF7	ENSG00000140285|ENST00000267843|FGF7	MULTI-SECPEP	A375_MHC_IP_R1	1	594.6583251953125	2	595.366787	1188.71902	-0.74472	-0.00044338	0.26594	0.00015833	-0.47879	-0.00028505	595.3667619661074	142.82	0.40353	142.82	142.64	143.04	0					13	7	2	0	0	0	0.94598	1	54801	54801		3.2813	2.8806	1	1621400			25517	5137	18424	18560	24989	24989					0.132210368685719
KKTKKEQKTA	10	Unmodified	_KKTKKEQKTA_					0	0	0		ENSG00000140285|ENST00000267843|FGF7;ENST00000441829.2_9:44302237-44303615:+|nuORF;FGF7|p.G176E|1|0.35|ENSG00000140285|chr15:49484446-49484446|G/A|missense_variant	ENSG00000140285|ENST00000267843|FGF7	ENSG00000140285|ENST00000267843|FGF7	MULTI-SECPEP	A375_MHC_IP_R2	2	594.6591186523438	2	595.366787	1188.71902	-0.37465	-0.00022305	-0.21958	-0.00013073	-0.59423	-0.00035378	595.3664577496703	142.83	0.55574	142.86	142.64	143.19	0.030731					17	10	2	0	0	0	0.94598	1	55826	55826		3.2813	3.2813	1	2339400			25518	5137	18424	18560	24990	24990					0.132210368685719
KKTRKIKLL	9	Unmodified	_KKTRKIKLL_					0	0	0			REV__FCER1A|p.R240K|1|0.54|ENSG00000179639|chr1:159307877-159307877|G/A|missense_variant	REV__FCER1A|p.R240K|1|0.54|ENSG00000179639|chr1:159307877-159307877|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	564.3778076171875	2	564.402976	1126.7914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.52	1	111.26	110.76	111.76	0.73692								0	0	0	0.15486	1	41690	41690		2.3027	0	1		+		25519	26622	18425	18561	24991	24991					0.2330741573277919
KKTVLHKEL	9	Unmodified	_KKTVLHKEL_					0	0	0		nc|ENSG00000180113|O60522-2|TDRD6;ENSG00000180113|ENST00000316081|TDRD6	nc|ENSG00000180113|O60522-2|TDRD6	nc|ENSG00000180113|O60522-2|TDRD6	MULTI-MSMS	A375_MHC_IP_R2	2	548.7473754882812	2	548.347866	1094.68118	-0.59504	-0.00032629	0.13392	7.3436E-05	-0.46111	-0.00025285	548.3478952180135	149.77	2.5221	149.79	147.49	150.01	0.018265					272	111	4	0	0	0	0.77526	1	58021	58021		0.6015	0	1	1619800			25520	8278	18426	18562	24992	24992					0.13762570673748087
KKVAGELS	8	Unmodified	_KKVAGELS_					0	0	0			REV__POFUT2|p.R314K|1|0.83|ENSG00000186866|chr21:45269910-45269910|C/T|missense_variant	REV__POFUT2|p.R314K|1|0.83|ENSG00000186866|chr21:45269910-45269910|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	416.6509704589844	2	416.25036	830.486168	-0.090033	-3.7476E-05	1.6227	0.00067546	1.5327	0.00063798	416.2509137854107	142.66	0.20248	142.66	142.54	142.74	0					5	3	2	0	0	0	0.972	1	54756	54756		0.69038	0	1	1493800	+		25521	27818	18427	18563	24993	24993					0.06414399868754117
KKVEDAKIAI	10	Unmodified	_KKVEDAKIAI_					0	0	0		ENST00000423695.6_1_5:10250480-10261980:+|nuORF;nc|ENSG00000150753|P48643-2|CCT5;ENSG00000150753|ENST00000280326|CCT5	ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENST00000423695.6_1_5:10250480-10261980:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	557.6870727539062	2	557.845156	1113.67576	-1.0286	-0.00057379	0.036548	2.0388E-05	-0.99203	-0.0005534	557.8450435537031	57.769	0.60851	58.518	58.17	58.779	0.74895					20	11	2	0	0	0	0.92199	1	21863	21863		12.241	0	1	1928400			25522	11762	18428	18564	24994	24994					0.12346847091248492
KKVEDAKIAIL	11	Unmodified	_KKVEDAKIAIL_					0	0	0		ENST00000423695.6_1_5:10250480-10261980:+|nuORF;nc|ENSG00000150753|P48643-2|CCT5;ENSG00000150753|ENST00000280326|CCT5	ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENST00000423695.6_1_5:10250480-10261980:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	615.9554443359375	2	614.387188	1226.75982	-0.69427	-0.00042655	0.026496	1.6279E-05	-0.66778	-0.00041027	614.3870870769123	149.34	2.4004	149.34	147.6	150	0					323	89	5	0	0	0	0.73795	1	57139	57139		1.3295	0.87119	1	7426100			25523	11762	18429	18565	24995	24995					0.15551378188160925
KKVEHIHPM	9	Unmodified	_KKVEHIHPM_					0	0	0		tr|U7SKT2|U7SKT2_FUSNUDNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ligAPE=3SV=1	tr|U7SKT2|U7SKT2_FUSNUDNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ligAPE=3SV=1	tr|U7SKT2|U7SKT2_FUSNUDNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ligAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	373.6291198730469	3	373.542821	1117.60663	0.08624	3.2214E-05	0.024752	9.246E-06	0.11099	4.146E-05	373.5427432732522	19.863	0.55622	20.474	20.095	20.651	0.61029					13	10	2	0	0	0	0.81254	1	5998	5998		0.23584	0.23584	1	693650			25524	29482	18430	18566	24996	24996					0.05253484590707558
KKVKKKKKKKH	11	Unmodified	_KKVKKKKKKKH_					0	0	0		ENSG00000187257|ENST00000334955|RSBN1L;RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	MSMS	A375_MHC_IP_R2	2	704.8307495117188	2	704.503555	1406.99256	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.67	1	142.7	142.2	143.2	0.030731								0	0	0	0.16353	1	55773	55773		0.35063	0.35063	1				25525	8817	18431	18567	24997	24997					0.3053410476929912
KKVKKKKKKKH	11	Unmodified	_KKVKKKKKKKH_					0	0	0		ENSG00000187257|ENST00000334955|RSBN1L;RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant	ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	MSMS	A375_MHC_IP_R2	2	704.4299926757812	2	704.503555	1406.99256	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.97	1	143	142.5	143.5	0.030731								0	0	0	0.16353	1	55887	55887		0.35063	0.35063	1				25526	8817	18431	18567	24998	24998					0.3053410476929912
KKVPENPNY	9	Unmodified	_KKVPENPNY_					0	0	0		WDR5B|p.E24K|1|0.18|ENSG00000196981|chr3:122415459-122415459|C/T|missense_variant	WDR5B|p.E24K|1|0.18|ENSG00000196981|chr3:122415459-122415459|C/T|missense_variant	WDR5B|p.E24K|1|0.18|ENSG00000196981|chr3:122415459-122415459|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	544.80224609375	2	544.790381	1087.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.596	1	83.596	83.096	84.096	0								0	0	0	0.15486	1	30593	30593		11.64	0	1				25527	30159	18432	18568	24999	24999					0.025928414719373905
KKVRKIKKKLV	11	Unmodified	_KKVRKIKKKLV_					0	0	0			REV__ENSG00000206530|ENST00000393845|CFAP44	REV__ENSG00000206530|ENST00000393845|CFAP44	MSMS	A375_MHC_IP_R1	1	684.6019897460938	2	684.500481	1366.98641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.74	1	90.74	90.24	91.24	0								0	0	0	0.1636	1	33348	33348		0	0	1		+		25528	22597	18433	18569	25000	25000					0.31759586537782525
KKVRSKNK	8	Unmodified	_KKVRSKNK_					0	0	0		nc|ENSG00000182670|P53804-3|TTC3;nc|ENSG00000182670|P53804-2|TTC3;ENSG00000182670|ENST00000418766|TTC3;ENST00000399586.2_1_X:74960734-74966719:-|nuORF	nc|ENSG00000182670|P53804-3|TTC3;ENST00000399586.2_1_X:74960734-74966719:-|nuORF	nc|ENSG00000182670|P53804-3|TTC3	MSMS	A375_MHC_IP_R2	2	494.6893005371094	2	494.324725	986.634898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.85	1	143.87	143.37	144.37	0.024414								0	0	0	0.16876	1	56205	56205		2.3027	0	1				25529	8429;11543	18434	18570	25001	25001					0.14104550562319673
KKVVLIELNQ	10	Unmodified	_KKVVLIELNQ_					0	0	0			REV__ENST00000505264.1_1_5:6623364-6625690:-|nuORF	REV__ENST00000505264.1_1_5:6623364-6625690:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	593.7293701171875	2	592.374081	1182.73361	-0.70626	-0.00041837	0.37488	0.00022207	-0.33138	-0.0001963	592.3741776215314	149.47	2.5413	149.47	147.46	150	0					331	103	5	0	0	0	0.72645	1	56983	56983		0.45834	0	1	4846700	+		25530	25532	18435	18571	25002	25002					0.14955109016705137
KKWALIHKR	9	Unmodified	_KKWALIHKR_					0	0	0		ENST00000378062.5_1_X:43808665-43809031:-|nuORF	ENST00000378062.5_1_X:43808665-43809031:-|nuORF	ENST00000378062.5_1_X:43808665-43809031:-|nuORF	MSMS	A375_MHC_IP_R2	2	590.4443359375	2	590.377292	1178.74003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.73	1	149.75	149.25	150.25	0.01825								0	0	0	0.15486	1	58103	58103		0.6015	0	1				25531	11306	18436	18572	25003	25003					0.15781091758753973
KKWDLFKKFFV	11	Unmodified	_KKWDLFKKFFV_					0	0	0		tr|U7SFX9|U7SFX9_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02273PE=4SV=1	tr|U7SFX9|U7SFX9_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02273PE=4SV=1	tr|U7SFX9|U7SFX9_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02273PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	496.7065734863281	3	495.958741	1484.85439	-0.27435	-0.00013606	-0.042442	-2.1049E-05	-0.31679	-0.00015711	496.29318576714803	149.83	1.6899	149.85	148.32	150.01	0.01825					96	62	2	0	0	0	1.0015	1	57715	57715		0	0	1	72373			25532	29398	18437	18573	25004	25004					0.1313593673012292
KKWFKQRL	8	Unmodified	_KKWFKQRL_					0	0	0		ENST00000554144.5_1_4:57514888-57516908:-|nuORF	ENST00000554144.5_1_4:57514888-57516908:-|nuORF	ENST00000554144.5_1_4:57514888-57516908:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	378.6201477050781	3	378.569588	1132.68693	0.45271	0.00017138	-0.071339	-2.7007E-05	0.38137	0.00014437	378.56954561844026	51.308	0.20538	51.308	51.219	51.424	0					8	3	3	0	0	0	0.77583	1	18242	18242		10.074	2.465	1	855720			25533	13414	18438	18574	25005	25005					0.1258971397608093
KKWFLFHRSRE	11	Unmodified	_KKWFLFHRSRE_					0	0	0			REV__ENST00000280758.9_2_12:107712233-107712596:+|nuORF	REV__ENST00000280758.9_2_12:107712233-107712596:+|nuORF	MSMS	A375_MHC_IP_R1	1	767.8251342773438	2	767.425502	1532.83645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.68	1	92.68	92.18	93.18	0								0	0	0	0.16312	1	34063	34063		2.4985	1.0166	1		+		25534	23315	18439	18575	25006	25006					0.09134614528011298
KKWKEIRRFFL	11	Unmodified	_KKWKEIRRFFL_					0	0	0		CYP2C9|p.S127F|1|0.35|ENSG00000138109|chr10:94942240-94942240|C/T|missense_variant	CYP2C9|p.S127F|1|0.35|ENSG00000138109|chr10:94942240-94942240|C/T|missense_variant	CYP2C9|p.S127F|1|0.35|ENSG00000138109|chr10:94942240-94942240|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	776.2412719726562	2	775.969545	1549.92454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.42	1	106.42	105.92	106.92	0								0	0	0	0.16353	1	39062	39062		0.35063	0.043601	1				25535	701	18440	18576	25007	25007					0.17157235118634162
KKWREPKF	8	Unmodified	_KKWREPKF_					0	0	0			REV__ENSG00000146233|ENST00000275016|CYP39A1	REV__ENSG00000146233|ENST00000275016|CYP39A1	MULTI-SECPEP	A375_MHC_IP_R2	2	373.9180603027344	3	373.553826	1117.63965	-0.046499	-1.737E-05	0.11009	4.1124E-05	0.063591	2.3755E-05	373.5537268638014	25.409	0.20479	26.053	25.873	26.078	0.64368					6	3	2	0	0	0	0.972	1	8426	8426		3.5965	2.2668	1	2465000	+		25536	19524	18441	18577	25008	25008					0.08553434705072505
KKWWRRKYLEF	11	Unmodified	_KKWWRRKYLEF_					0	0	0		ENST00000433473.7_1_1:40558092-40558149:-|nuORF	ENST00000433473.7_1_1:40558092-40558149:-|nuORF	ENST00000433473.7_1_1:40558092-40558149:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	548.0464477539062	3	547.312177	1638.9147	-0.8102	-0.00044343	0.58884	0.00032228	-0.22136	-0.00012115	547.3122481582293	134.61	0.86105	134.61	134.12	134.98	0					52	16	4	0	0	0	0.73934	1	51843	51843		0	0	1	6888400			25537	11893	18442	18578	25009	25009					0.12080047113272485
KKWWRRKYLEF	11	Unmodified	_KKWWRRKYLEF_					0	0	0		ENST00000433473.7_1_1:40558092-40558149:-|nuORF	ENST00000433473.7_1_1:40558092-40558149:-|nuORF	ENST00000433473.7_1_1:40558092-40558149:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	547.7119750976562	3	547.312177	1638.9147	-0.68044	-0.00037241	0.77851	0.00042609	0.098077	5.3679E-05	547.3124387918347	134.5	0.81403	134.64	134.24	135.05	0.13901					52	15	4	0	0	0	0.73934	1	52835	52835		0	0	1	6981900			25538	11893	18442	18578	25010	25010					0.12080047113272485
KKWWRRKYLEF	11	Unmodified	_KKWWRRKYLEF_					0	0	0		ENST00000433473.7_1_1:40558092-40558149:-|nuORF	ENST00000433473.7_1_1:40558092-40558149:-|nuORF	ENST00000433473.7_1_1:40558092-40558149:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	547.7124633789062	3	547.312177	1638.9147	-0.6563	-0.0003592	0.70452	0.00038559	0.048222	2.6392E-05	547.3124182509806	135.27	1.1235	135.41	135	136.12	0.13901					69	21	4	0	0	0	0.73934	3	53094	53094;53192;53283		0	0	1	11371000			25539	11893	18442	18578	25011;25012;25013	25011					0.12080047113272485
KKWWRRKYLEF	11	Unmodified	_KKWWRRKYLEF_					0	0	0		ENST00000433473.7_1_1:40558092-40558149:-|nuORF	ENST00000433473.7_1_1:40558092-40558149:-|nuORF	ENST00000433473.7_1_1:40558092-40558149:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	820.8646850585938	2	820.464627	1638.9147	-0.69022	-0.0005663	0.71031	0.00058279	0.020092	1.6484E-05	820.4652727547063	135.29	0.76384	135.43	135.1	135.86	0.13901					25	14	3	0	0	0	0.73934	1	53221	53221		0	0	1	2478500			25540	11893	18442	18578	25014	25014					0.12080047113272485
KKWWRRKYLEF	11	Unmodified	_KKWWRRKYLEF_					0	0	0		ENST00000433473.7_1_1:40558092-40558149:-|nuORF	ENST00000433473.7_1_1:40558092-40558149:-|nuORF	ENST00000433473.7_1_1:40558092-40558149:-|nuORF	MSMS	A375_MHC_IP_R2	2	820.4647827148438	2	820.464627	1638.9147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.398	1	85.134	84.634	85.634	0.73601								0	0	0	0.1636	1	32083	32083		0	0	1				25541	11893	18442	18578	25015	25015					0.12080047113272485
KKWWRRKYLEF	11	Unmodified	_KKWWRRKYLEF_					0	0	0		ENST00000433473.7_1_1:40558092-40558149:-|nuORF	ENST00000433473.7_1_1:40558092-40558149:-|nuORF	ENST00000433473.7_1_1:40558092-40558149:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	547.1685180664062	3	547.312177	1638.9147	-1.1664	-0.00063838	-0.9039	-0.00049472	-2.0703	-0.0011331	547.6453746075806	58.969	0.40678	59.716	59.438	59.845	0.74714					19	7	4	0	0	0	1.0015	1	22228	22228		0.094841	0.094841	1	3144600			25542	11893	18442	18578	25016	25016					0.12080047113272485
KKWWRRKYLEF	11	Unmodified	_KKWWRRKYLEF_					0	0	0		ENST00000433473.7_1_1:40558092-40558149:-|nuORF	ENST00000433473.7_1_1:40558092-40558149:-|nuORF	ENST00000433473.7_1_1:40558092-40558149:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	820.464627	1638.9147	-0.66583	-0.00054629	0.94718	0.00077712	0.28135	0.00023084	820.9667573755029	135.38	0.6619	135.38	135.03	135.69	0	-0.024646	0.0001572	NaN	0	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2218100			25543	11893	18442	18578							0.12080047113272485
KKYDFDLRR	9	Unmodified	_KKYDFDLRR_					0	0	0			REV__ENSG00000107295|ENST00000380607|SH3GL2	REV__ENSG00000107295|ENST00000380607|SH3GL2	MULTI-SECPEP	A375_MHC_IP_R2	2	413.9576721191406	3	414.231412	1239.67241	-0.31984	-0.00013249	-3.592	-0.0014879	-3.9119	-0.0016204	414.2284254794722	20.322	0.20488	20.932	20.803	21.008	0.61029					5	3	2	0	0	0	0.7905	1	6331	6331		8.4443	8.115	1	415510	+		25544	17480	18443	18579	25017	25017					0.06215597037248699
KKYLFEFGKA	10	Unmodified	_KKYLFEFGKA_					0	0	0		tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	615.5325927734375	2	615.847699	1229.68084	-0.14827	-9.1312E-05	-0.053476	-3.2933E-05	-0.20175	-0.00012425	616.3490430367727	92.363	0.50679	92.363	92.059	92.566	0					11	9	2	0	0	0	0.91442	1	33874	33874		7.609	2.3121	1	1098800			25545	29892	18444	18580	25018	25018					0.07519150953908138
KKYPFILEV	9	Unmodified	_KKYPFILEV_					0	0	0		ENSG00000218739|ENST00000402297|CEBPZOS	ENSG00000218739|ENST00000402297|CEBPZOS	ENSG00000218739|ENST00000402297|CEBPZOS	MULTI-MSMS	A375_MHC_IP_R2	2	379.96160888671875	3	379.561987	1135.66413	0.058374	2.2157E-05	-0.55399	-0.00021027	-0.49561	-0.00018812	379.5617073353387	77.171	0.4561	77.914	77.657	78.113	0.74293					14	8	2	0	0	0	0.7235	1	29340	29340		4.897	1.31	1	1250200			25546	9656	18445	18581	25019	25019					0.10172650067943323
KKYPFILEV	9	Unmodified	_KKYPFILEV_					0	0	0		ENSG00000218739|ENST00000402297|CEBPZOS	ENSG00000218739|ENST00000402297|CEBPZOS	ENSG00000218739|ENST00000402297|CEBPZOS	MULTI-SECPEP	A375_MHC_IP_R2	2	569.2394409179688	2	568.839342	1135.66413	-0.34948	-0.0001988	0.34592	0.00019677	-0.0035589	-2.0244E-06	568.8392131403017	77.14	0.40591	77.883	77.707	78.113	0.74293					13	7	2	0	0	0	0.49205	1	29327	29327		27.629	11.782	1	1371100			25547	9656	18445	18581	25020	25020					0.10172650067943323
KKYPFILEV	9	Unmodified	_KKYPFILEV_					0	0	0		ENSG00000218739|ENST00000402297|CEBPZOS	ENSG00000218739|ENST00000402297|CEBPZOS	ENSG00000218739|ENST00000402297|CEBPZOS	MULTI-MATCH	A375_MHC_IP_R1	1		2	568.839342	1135.66413	-0.21596	-0.00012285	-0.2983	-0.00016968	-0.51426	-0.00029253	568.8392832825297	78.14	0.50858	78.14	77.895	78.403	0	0.1284	-0.00036532	NaN	27.629	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1456200			25548	9656	18445	18581							0.10172650067943323
KKYPFILEV	9	Unmodified	_KKYPFILEV_					0	0	0		ENSG00000218739|ENST00000402297|CEBPZOS	ENSG00000218739|ENST00000402297|CEBPZOS	ENSG00000218739|ENST00000402297|CEBPZOS	MULTI-MATCH	A375_MHC_IP_R1	1		3	379.561987	1135.66413	0.45455	0.00017253	-0.27259	-0.00010347	0.18196	6.9066E-05	379.56178334650036	78.239	0.45715	78.239	77.946	78.403	0	0.16254	0.00022918	NaN	4.897	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1754200			25549	9656	18445	18581							0.10172650067943323
KKYPKVSVIF	10	Unmodified	_KKYPKVSVIF_					0	0	0		tr|U7STF8|U7STF8_FUSNUAmidohydrolase-relateddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01393PE=4SV=1	tr|U7STF8|U7STF8_FUSNUAmidohydrolase-relateddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01393PE=4SV=1	tr|U7STF8|U7STF8_FUSNUAmidohydrolase-relateddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01393PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	403.984619140625	3	403.584903	1207.73288	0.070621	2.8502E-05	0.1101	4.4435E-05	0.18072	7.2937E-05	403.5848460791235	95.943	0.4569	96.693	96.5	96.957	0.75045					18	8	3	0	0	0	0.71763	1	36458	36458		4.4062	1.3339	1	1717500			25550	29689	18446	18582	25021	25021					0.13732314367643994
KKYPQPKGQKK	11	Unmodified	_KKYPQPKGQKK_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	A375_MHC_IP_R1	1	665.1785888671875	2	665.403704	1328.79285	-0.89856	-0.0005979	-0.56192	-0.0003739	-1.4605	-0.0009718	665.9035626480139	121.32	0.2551	121.32	121.16	121.41	0					5	4	2	0	0	0	0.73016	1	44993	44993		8.7454	1.1365	1	29241000			25551	2444	18447	18583	25022	25022					0.14161005030882734
KKYRDRFVYIS	11	Unmodified	_KKYRDRFVYIS_					0	0	0			REV__nc|ENSG00000123444|Q9NVX7-1|KBTBD4	REV__nc|ENSG00000123444|Q9NVX7-1|KBTBD4	MSMS	A375_MHC_IP_R2	2	737.81396484375	2	737.911893	1473.80923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.417	1	90.149	89.649	90.649	0.7318								0	0	0	0.16302	1	34028	34028		2.9952	0	1		+		25552	18243	18448	18584	25023	25023					0.09128086197006269
KKYYIRWKHYE	11	Unmodified	_KKYYIRWKHYE_					0	0	0			REV__nc|ENSG00000009950|Q9NP71-5|MLXIPL	REV__nc|ENSG00000009950|Q9NP71-5|MLXIPL	MSMS	A375_MHC_IP_R2	2	807.8360595703125	2	807.432993	1612.85143	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.231	1	87.964	87.464	88.464	0.733								0	0	0	0.16354	1	33173	33173		0.30703	0.30703	1		+		25553	16188	18449	18585	25024	25024					0.06952061605375093
KLAAAISEV	9	Unmodified	_KLAAAISEV_					0	0	0		nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST;nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST	nc|ENSG00000153113|P20810-3|CAST	nc|ENSG00000153113|P20810-3|CAST	MULTI-SECPEP	A375_MHC_IP_R1	1	451.6712646484375	2	451.271293	900.528032	0.25488	0.00011502	-0.21031	-9.4909E-05	0.044569	2.0113E-05	451.271145368961	48.603	0.65806	48.603	48.375	49.033	0					24	12	3	0	0	0	0.070665	1	17159	17159		60.074	10.141	1	9899000			25554	6007	18450	18586	25025	25025					0.07378955557271638
KLAAAISEV	9	Unmodified	_KLAAAISEV_					0	0	0		nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST;nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST	nc|ENSG00000153113|P20810-3|CAST	nc|ENSG00000153113|P20810-3|CAST	MULTI-SECPEP	A375_MHC_IP_R2	2	451.671142578125	2	451.271293	900.528032	-0.13811	-6.2326E-05	-0.30959	-0.00013971	-0.44771	-0.00020204	451.2711339852063	47.693	0.70861	48.454	48.174	48.883	0.76128					27	13	3	0	0	0	0.070665	1	17874	17874		69.105	19.172	1	10162000			25555	6007	18450	18586	25026	25026					0.07378955557271638
KLAARYIDF	9	Unmodified	_KLAARYIDF_					0	0	0		ENSG00000233608|ENST00000612363|TWIST2;ENSG00000122691|ENST00000242261|TWIST1	ENSG00000233608|ENST00000612363|TWIST2	ENSG00000233608|ENST00000612363|TWIST2	MULTI-SECPEP	A375_MHC_IP_R2	2	366.6095886230469	3	366.209836	1095.60768	0.10229	3.7459E-05	-0.3029	-0.00011092	-0.20061	-7.3464E-05	366.2097086073655	76.177	0.45576	76.918	76.691	77.146	0.74052					14	8	2	0	0	0	0.74169	1	28953	28953		16.149	0	1	2349400			25556	3799	18451	18587	25027	25027					0.06370022231271832
KLADAKIFL	9	Unmodified	_KLADAKIFL_					0	0	0		ENSG00000141562|ENST00000309794|NARF;nc|ENSG00000141562|Q9UHQ1-2|NARF;NARF|p.S203Ffs*3|1|0.6|ENSG00000141562|chr17:82478887-82478887|C/-|frameshift_variant;ENST00000577812.5_1_17:80416679-80441656:+|nuORF	ENSG00000141562|ENST00000309794|NARF	ENSG00000141562|ENST00000309794|NARF	MULTI-SECPEP	A375_MHC_IP_R1	1	510.2184143066406	2	509.81841	1017.62227	-0.59119	-0.0003014	0.50033	0.00025508	-0.090852	-4.6318E-05	509.81864501277835	65.969	0.55803	65.969	65.666	66.224	0					20	10	3	0	0	0	0.27114	1	23911	23911		45.74	11.338	1	1924500			25557	5256	18452	18588	25028	25028					0.11416094379399055
KLADAKIFL	9	Unmodified	_KLADAKIFL_					0	0	0		ENSG00000141562|ENST00000309794|NARF;nc|ENSG00000141562|Q9UHQ1-2|NARF;NARF|p.S203Ffs*3|1|0.6|ENSG00000141562|chr17:82478887-82478887|C/-|frameshift_variant;ENST00000577812.5_1_17:80416679-80441656:+|nuORF	ENSG00000141562|ENST00000309794|NARF	ENSG00000141562|ENST00000309794|NARF	MULTI-SECPEP	A375_MHC_IP_R2	2	510.2178955078125	2	509.81841	1017.62227	-0.75383	-0.00038432	-0.24183	-0.00012329	-0.99566	-0.00050761	509.81827281552506	64.844	0.81403	65.582	65.103	65.918	0.73812					26	15	3	0	0	0	0.32966	1	24590	24590		42.312	20.776	1	1672600			25558	5256	18452	18588	25029	25029					0.11416094379399055
KLADDVDLEQV	11	Unmodified	_KLADDVDLEQV_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF;ENST00000480327.1_1_9:35060776-35061606:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-SECPEP	A375_MHC_IP_R1	1	623.1842651367188	2	622.822075	1243.6296	-0.6503	-0.00040502	0.22286	0.00013881	-0.42743	-0.00026622	622.8222973862481	66.231	0.50626	66.231	65.972	66.478	0					15	9	2	0	0	0	0.16642	1	23983	23983		59.052	5.6485	1	2556700			25559	6934	18453	18589	25030	25030					0.017527373985103623
KLADDVDLEQV	11	Unmodified	_KLADDVDLEQV_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF;ENST00000480327.1_1_9:35060776-35061606:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-SECPEP	A375_MHC_IP_R2	2	623.2213745117188	2	622.822075	1243.6296	-0.87744	-0.00054649	0.86506	0.00053878	-0.012387	-7.7148E-06	622.8222535507375	65.425	0.55747	66.163	65.867	66.425	0.73811					19	10	3	0	0	0	0.66194	1	24793	24793		37.771	24.156	1	3306000			25560	6934	18453	18589	25031	25031					0.017527373985103623
KLADKLYNL	9	Unmodified	_KLADKLYNL_					0	0	0		ENST00000559834.1_1_15:91474507-91475192:-|nuORF;nc|ENSG00000184508|Q8N4P3-2|HDDC3;ENST00000494993.1_1_15:91474507-91475362:-|nuORF;ENSG00000184508|ENST00000394272|HDDC3	ENST00000559834.1_1_15:91474507-91475192:-|nuORF	ENST00000559834.1_1_15:91474507-91475192:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	360.2813720703125	3	359.881608	1076.623	0.24198	8.7084E-05	-0.049901	-1.7958E-05	0.19208	6.9126E-05	359.88155753233195	53.768	0.55817	53.768	53.505	54.063	0					25	10	4	0	0	0	0.6656	1	19158	19158		10.151	0	1	8125900			25561	8591	18454	18590	25032	25032					0.08774889028472899
KLADKLYNL	9	Unmodified	_KLADKLYNL_					0	0	0		ENST00000559834.1_1_15:91474507-91475192:-|nuORF;nc|ENSG00000184508|Q8N4P3-2|HDDC3;ENST00000494993.1_1_15:91474507-91475362:-|nuORF;ENSG00000184508|ENST00000394272|HDDC3	ENST00000559834.1_1_15:91474507-91475192:-|nuORF	ENST00000559834.1_1_15:91474507-91475192:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	539.71875	2	539.318774	1076.623	-0.52887	-0.00028523	0.3854	0.00020786	-0.14347	-7.7374E-05	539.3189050966149	53.784	0.55817	53.784	53.505	54.063	0					25	10	3	0	0	0	0.03341	1	19171	19171		93.166	31.564	1	10305000			25562	8591	18454	18590	25033	25033					0.08774889028472899
KLADKLYNL	9	Unmodified	_KLADKLYNL_					0	0	0		ENST00000559834.1_1_15:91474507-91475192:-|nuORF;nc|ENSG00000184508|Q8N4P3-2|HDDC3;ENST00000494993.1_1_15:91474507-91475362:-|nuORF;ENSG00000184508|ENST00000394272|HDDC3	ENST00000559834.1_1_15:91474507-91475192:-|nuORF	ENST00000559834.1_1_15:91474507-91475192:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	539.718017578125	2	539.318774	1076.623	-1.3647	-0.00073601	0.41319	0.00022284	-0.95152	-0.00051317	539.3189331971362	52.843	0.60888	53.594	53.233	53.842	0.75105					25	11	3	0	0	0	0.46121	1	19899	19899		26.021	6.6588	1	8317500			25563	8591	18454	18590	25034	25034					0.08774889028472899
KLADQYPHL	9	Unmodified	_KLADQYPHL_					0	0	0		nc|ENSG00000100146|P56693|SOX10;chr22:37984441-37987345|453|15.29|0.34|5.48|-|ENST00000360880|SOX10,SOX10;nc|ENSG00000100146|P56693-2|SOX10;ENSG00000125398|ENST00000245479|SOX9;ENST00000566034.1_1_16:1032135-1032345:+|nuORF;ENSG00000005513|ENST00000293894|SOX8	nc|ENSG00000100146|P56693|SOX10;ENSG00000005513|ENST00000293894|SOX8	nc|ENSG00000100146|P56693|SOX10	MULTI-SECPEP	A375_MHC_IP_R1	1	362.5976257324219	3	362.197708	1083.57129	0.36154	0.00013095	-0.54865	-0.00019872	-0.18711	-6.7771E-05	362.1974703297357	42.733	0.91235	42.733	42.285	43.197	0					51	17	4	0	0	0	0.65623	1	14772	14772		23.79	8.5413	1	18317000			25564	471;897	18455	18591	25035	25035					0.032851453345756454
KLADQYPHL	9	Unmodified	_KLADQYPHL_					0	0	0		nc|ENSG00000100146|P56693|SOX10;chr22:37984441-37987345|453|15.29|0.34|5.48|-|ENST00000360880|SOX10,SOX10;nc|ENSG00000100146|P56693-2|SOX10;ENSG00000125398|ENST00000245479|SOX9;ENST00000566034.1_1_16:1032135-1032345:+|nuORF;ENSG00000005513|ENST00000293894|SOX8	nc|ENSG00000100146|P56693|SOX10;ENSG00000005513|ENST00000293894|SOX8	nc|ENSG00000100146|P56693|SOX10	MULTI-SECPEP	A375_MHC_IP_R1	1	543.1929321289062	2	542.792924	1083.57129	-0.40037	-0.00021732	-0.33296	-0.00018073	-0.73333	-0.00039805	542.7927517765954	42.764	0.75884	42.764	42.336	43.095	0					45	14	4	0	0	0	0.011465	1	14759	14759		149.91	85.678	1	26746000			25565	471;897	18455	18591	25036	25036					0.032851453345756454
KLADQYPHL	9	Unmodified	_KLADQYPHL_					0	0	0		nc|ENSG00000100146|P56693|SOX10;chr22:37984441-37987345|453|15.29|0.34|5.48|-|ENST00000360880|SOX10,SOX10;nc|ENSG00000100146|P56693-2|SOX10;ENSG00000125398|ENST00000245479|SOX9;ENST00000566034.1_1_16:1032135-1032345:+|nuORF;ENSG00000005513|ENST00000293894|SOX8	nc|ENSG00000100146|P56693|SOX10;ENSG00000005513|ENST00000293894|SOX8	nc|ENSG00000100146|P56693|SOX10	MULTI-SECPEP	A375_MHC_IP_R2	2	362.59759521484375	3	362.197708	1083.57129	-0.12461	-4.5133E-05	-0.25039	-9.069E-05	-0.375	-0.00013582	362.19758296071933	41.858	0.8182	42.633	42.249	43.067	0.77451					43	15	4	0	0	0	0.65623	1	15496	15496		18.373	7.5736	1	24196000			25566	471;897	18455	18591	25037	25037					0.032851453345756454
KLADQYPHL	9	Unmodified	_KLADQYPHL_					0	0	0		nc|ENSG00000100146|P56693|SOX10;chr22:37984441-37987345|453|15.29|0.34|5.48|-|ENST00000360880|SOX10,SOX10;nc|ENSG00000100146|P56693-2|SOX10;ENSG00000125398|ENST00000245479|SOX9;ENST00000566034.1_1_16:1032135-1032345:+|nuORF;ENSG00000005513|ENST00000293894|SOX8	nc|ENSG00000100146|P56693|SOX10;ENSG00000005513|ENST00000293894|SOX8	nc|ENSG00000100146|P56693|SOX10	MULTI-SECPEP	A375_MHC_IP_R2	2	543.1923828125	2	542.792924	1083.57129	-0.80324	-0.00043599	-0.10805	-5.8648E-05	-0.91129	-0.00049464	542.7928529102593	41.858	0.7159	42.633	42.3	43.016	0.77451					41	13	4	0	0	0	0.010947	1	15512	15512		165.72	87.571	1	26759000			25567	471;897	18455	18591	25038	25038					0.032851453345756454
KLADSIKAI	9	Unmodified	_KLADSIKAI_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-SECPEP	A375_MHC_IP_R1	1	480.1998291015625	2	479.800217	957.585882	-0.17986	-8.6297E-05	-0.064949	-3.1162E-05	-0.24481	-0.00011746	479.80016799030966	43.017	0.30497	43.017	42.841	43.146	0					10	5	2	0	0	0	0.15736	1	14962	14962		57.108	11.408	1	2669900			25568	7254	18456	18592	25039	25039					0.1053921748269886
KLAEALYIA	9	Unmodified	_KLAEALYIA_					0	0	0		ENSG00000100603|ENST00000261531|SNW1;ENST00000553565.1_1_14:78197307-78203348:-|nuORF	ENSG00000100603|ENST00000261531|SNW1	ENSG00000100603|ENST00000261531|SNW1	MULTI-SECPEP	A375_MHC_IP_R1	1	496.6947937011719	2	496.294768	990.574983	-0.04102	-2.0358E-05	0.50691	0.00025158	0.46589	0.00023122	496.2946551691533	69.907	0.76009	69.907	69.529	70.289	0					34	14	4	0	0	0	0.11711	1	25358	25358		43.772	9.67	1	12569000			25569	2201	18457	18593	25040	25040					0.07931815108406681
KLAEALYIA	9	Unmodified	_KLAEALYIA_					0	0	0		ENSG00000100603|ENST00000261531|SNW1;ENST00000553565.1_1_14:78197307-78203348:-|nuORF	ENSG00000100603|ENST00000261531|SNW1	ENSG00000100603|ENST00000261531|SNW1	MULTI-SECPEP	A375_MHC_IP_R2	2	496.6943359375	2	496.294768	990.574983	-0.36591	-0.0001816	-0.34774	-0.00017258	-0.71365	-0.00035418	496.2944970394492	69.011	0.65894	69.746	69.423	70.082	0.73512					34	12	4	0	0	0	0.27742	1	26097	26097		29.841	0	1	15160000			25570	2201	18457	18593	25041	25041					0.07931815108406681
KLAEFFWRQNV	11	Unmodified	_KLAEFFWRQNV_					0	0	0			REV__ENSG00000152078|ENST00000370203|TLCD4	REV__ENSG00000152078|ENST00000370203|TLCD4	MULTI-SECPEP	A375_MHC_IP_R2	2	479.6895446777344	3	479.9261	1436.75647	-0.82339	-0.00039517	3.1159	0.0014954	2.2925	0.0011002	479.9269780082151	33.265	0.20356	34.017	33.891	34.095	0.75225					5	3	2	0	0	0	1.0004	1	11894	11894		0.40827	0	1	1316700	+		25571	19789	18458	18594	25042	25042					0.055561281341624635
KLAEIRHEV	9	Unmodified	_KLAEIRHEV_					0	0	0		ENSG00000132950|ENST00000337963|ZMYM5;nc|ENSG00000132950|Q9UJ78-5|ZMYM5;ENST00000382909.5_1_13:20398619-20425669:-|nuORF	ENSG00000132950|ENST00000337963|ZMYM5	ENSG00000132950|ENST00000337963|ZMYM5	MULTI-MSMS	A375_MHC_IP_R1	1	365.9486083984375	3	365.548741	1093.62439	0.20268	7.4088E-05	-0.20492	-7.491E-05	-0.0022473	-8.2149E-07	365.54865543735025	23.187	0.60926	23.187	22.924	23.533	0					18	11	3	0	0	0	0.018166	1	6324	6324		85.764	55.061	1	13763000			25572	4466	18459	18595	25043	25043					0.0813252311722863
KLAEIRHEV	9	Unmodified	_KLAEIRHEV_					0	0	0		ENSG00000132950|ENST00000337963|ZMYM5;nc|ENSG00000132950|Q9UJ78-5|ZMYM5;ENST00000382909.5_1_13:20398619-20425669:-|nuORF	ENSG00000132950|ENST00000337963|ZMYM5	ENSG00000132950|ENST00000337963|ZMYM5	MULTI-MSMS	A375_MHC_IP_R2	2	365.94866943359375	3	365.548741	1093.62439	-0.27628	-0.00010099	0.50145	0.00018331	0.22517	8.2311E-05	365.5488577569632	20.511	0.81445	21.121	20.752	21.566	0.61029					35	15	3	0	0	0	0.2989	1	6359	6359		30.703	8.904	1	4103700			25573	4466	18459	18595	25044	25044					0.0813252311722863
KLAEIVKQV	9	Unmodified	_KLAEIVKQV_					0	0	0		ENSG00000089022|ENST00000550735|MAPKAPK5;nc|ENSG00000089022|Q8IW41|MAPKAPK5	ENSG00000089022|ENST00000550735|MAPKAPK5	ENSG00000089022|ENST00000550735|MAPKAPK5	MULTI-SECPEP	A375_MHC_IP_R1	1	514.7289428710938	2	514.329142	1026.64373	-0.76215	-0.00039199	0.31879	0.00016396	-0.44336	-0.00022803	514.3292536793145	39.669	0.66062	39.669	39.491	40.151	0					28	12	3	0	0	0	1.9532E-08	1	13559	13559		163.69	87.926	1	39569000			25574	1908	18460	18596	25045	25045					0.13147479408144136
KLAEIVKQV	9	Unmodified	_KLAEIVKQV_					0	0	0		ENSG00000089022|ENST00000550735|MAPKAPK5;nc|ENSG00000089022|Q8IW41|MAPKAPK5	ENSG00000089022|ENST00000550735|MAPKAPK5	ENSG00000089022|ENST00000550735|MAPKAPK5	MULTI-SECPEP	A375_MHC_IP_R2	2	514.7286987304688	2	514.329142	1026.64373	-1.0728	-0.00055177	0.12059	6.2022E-05	-0.95221	-0.00048975	514.3291609789928	38.756	0.61295	39.53	39.25	39.863	0.77451					26	11	3	0	0	0	1.9532E-08	1	14246	14246		189.73	82.791	1	25698000			25575	1908	18460	18596	25046	25046					0.13147479408144136
KLAEKLTIL	9	Unmodified	_KLAEKLTIL_					0	0	0		NCKAP1|p.H711Afs*9|1|0.13|ENSG00000061676|chr2:182956473-182956485|TATTTCCAGATGA/-|frameshift_variant;NCKAP1|p.S861Lfs*12|1|0.27|ENSG00000061676|chr2:182952409-182952424|AGTTCAGCAACTTGTG/-|frameshift_variant;ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENST00000547500.1_1_12:54891564-54894436:+|nuORF;ENSG00000123338|ENST00000293373|NCKAP1L	NCKAP1|p.H711Afs*9|1|0.13|ENSG00000061676|chr2:182956473-182956485|TATTTCCAGATGA/-|frameshift_variant;ENSG00000123338|ENST00000293373|NCKAP1L	NCKAP1|p.H711Afs*9|1|0.13|ENSG00000061676|chr2:182956473-182956485|TATTTCCAGATGA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	515.2390747070312	2	514.839342	1027.66413	-0.55105	-0.0002837	-0.050824	-2.6166E-05	-0.60187	-0.00030987	514.8393296258208	59.117	0.35684	59.117	58.938	59.295	0					11	6	2	0	0	0	0.46121	1	21266	21266		32.037	8.2477	1	2130100			25576	1321;3839	18461	18597	25047	25047					0.15140650067951356
KLAELNNDL	9	Unmodified	_KLAELNNDL_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MSMS	A375_MHC_IP_R1	1	515.19091796875	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.017	1	79.017	78.517	79.517	0								0	0	0	0.1493	1	28841	28841		22.736	3.4793	1		+		25577	19783	18462	18598	25048	25048					0.03709135235044414
KLAESKVSV	9	Unmodified	_KLAESKVSV_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;nc|ENSG00000139218|Q99590-2|SCAF11;ENST00000550629.1_1_12:46313059-46318516:-|nuORF	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-SECPEP	A375_MHC_IP_R1	1	481.189697265625	2	480.78985	959.565146	-0.5548	-0.00026674	-0.021668	-1.0418E-05	-0.57647	-0.00027716	480.78987669497474	23.355	0.2557	23.355	23.176	23.432	0					6	4	2	0	0	0	0.1952	1	6406	6406		39.213	18.798	1	4785200			25578	5060	18463	18599	25049	25049					0.08374627103057719
KLAESKVSV	9	Unmodified	_KLAESKVSV_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;nc|ENSG00000139218|Q99590-2|SCAF11;ENST00000550629.1_1_12:46313059-46318516:-|nuORF	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-SECPEP	A375_MHC_IP_R2	2	481.189453125	2	480.78985	959.565146	-0.89832	-0.0004319	0.51406	0.00024715	-0.38426	-0.00018475	480.78996521044945	21.031	0.35447	21.65	21.473	21.828	0.61932					10	6	2	0	0	0	0.65623	1	6623	6623		13.615	2.8154	1	1180000			25579	5060	18463	18599	25050	25050					0.08374627103057719
KLAEVTKVV	9	Unmodified	_KLAEVTKVV_					0	0	0		ENSG00000167325|ENST00000300738|RRM1;RRM1|p.F463Y|1|0.41|ENSG00000167325|chr11:4126751-4126751|T/A|missense_variant	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-SECPEP	A375_MHC_IP_R1	1	494.21551513671875	2	493.815867	985.617182	-0.39238	-0.00019376	0.17014	8.4018E-05	-0.22224	-0.00010974	493.81574854223567	34.59	0.30288	34.59	34.405	34.708	0					12	5	3	0	0	0	0.1952	1	11444	11444		53.317	17.19	1	3057700			25580	7178	18464	18600	25051	25051					0.12379790516820321
KLAEVTKVV	9	Unmodified	_KLAEVTKVV_					0	0	0		ENSG00000167325|ENST00000300738|RRM1;RRM1|p.F463Y|1|0.41|ENSG00000167325|chr11:4126751-4126751|T/A|missense_variant	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	A375_MHC_IP_R2	2	494.21527099609375	2	493.815867	985.617182	-1.0463	-0.00051669	0.17923	8.8507E-05	-0.86709	-0.00042818	493.8158910797399	33.723	0.30199	34.475	34.298	34.6	0.75225					10	5	2	0	0	0	0.23226	1	12132	12132		35.612	11.592	1	3003400			25581	7178	18464	18600	25052	25052					0.12379790516820321
KLAKLQAQV	9	Unmodified	_KLAKLQAQV_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000134717|Q96K17-3|BTF3L4;ENST00000524414.5_1_1:52521992-52530613:+|nuORF;ENST00000533836.1_1_1:52522019-52536962:+|nuORF;ENST00000510787.5_1_5:72794492-72798477:+|nuORF;ENSG00000134717|ENST00000313334|BTF3L4	nc|ENSG00000145741|P20290-2|BTF3;ENSG00000134717|ENST00000313334|BTF3L4	nc|ENSG00000145741|P20290-2|BTF3	MULTI-SECPEP	A375_MHC_IP_R1	1	500.2211608886719	2	499.821484	997.628415	-0.49298	-0.0002464	-0.031205	-1.5597E-05	-0.52419	-0.000262	499.82142483791966	27.568	0.50569	27.568	27.381	27.887	0					22	9	3	0	0	0	0.011017	1	8382	8382		123.45	65.979	1	12812000			25582	5578;4600	18465	18601	25053	25053					0.1295061261095043
KLAKLQAQV	9	Unmodified	_KLAKLQAQV_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000134717|Q96K17-3|BTF3L4;ENST00000524414.5_1_1:52521992-52530613:+|nuORF;ENST00000533836.1_1_1:52522019-52536962:+|nuORF;ENST00000510787.5_1_5:72794492-72798477:+|nuORF;ENSG00000134717|ENST00000313334|BTF3L4	nc|ENSG00000145741|P20290-2|BTF3;ENSG00000134717|ENST00000313334|BTF3L4	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	A375_MHC_IP_R2	2	500.2209167480469	2	499.821484	997.628415	-0.80663	-0.00040317	0.26896	0.00013443	-0.53766	-0.00026874	499.82153253165615	26.784	0.61314	27.444	27.212	27.825	0.65992					26	11	3	0	0	0	0.030038	1	9089	9089		74.929	34.972	1	7646800			25583	5578;4600	18465	18601	25054	25054					0.1295061261095043
KLAKRWNL	8	Unmodified	_KLAKRWNL_					0	0	0			REV__ENST00000265339.6_1_5:133726266-133726425:+|nuORF	REV__ENST00000265339.6_1_5:133726266-133726425:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	515.2208251953125	2	514.821818	1027.62908	-0.96567	-0.00049715	-1.257	-0.00064715	-2.2227	-0.0011443	514.8211899269156	34.838	0.35275	35.602	35.425	35.778	0.76338					11	6	2	0	0	0	0.8211	1	12632	12632		30.225	0	1	2335300	+		25584	23249	18466	18602	25055	25055					0.11637452050649699
KLANPPPMV	9	Unmodified	_KLANPPPMV_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6468505859375	2	483.775688	965.536823	-0.59876	-0.00028966	0.34147	0.00016519	-0.25729	-0.00012447	483.7758949768021	45.598	0.40197	46.364	46.15	46.552	0.76519					11	7	2	0	0	0	0.47368	1	17058	17058		20.454	12.543	1	784100			25585	5883	18467	18603	25056	25056					0.05267605922108487
KLANTPQPI	9	Unmodified	_KLANTPQPI_					0	0	0			REV__ENSG00000100592|ENST00000360909|DAAM1	REV__ENSG00000100592|ENST00000360909|DAAM1	MULTI-SECPEP	A375_MHC_IP_R1	1	491.09759521484375	2	491.290017	980.565481	-0.34267	-0.00016835	-0.35056	-0.00017223	-0.69323	-0.00034058	491.2899363094627	43.9	0.25375	43.9	43.808	44.061	0					6	4	2	0	0	0	0.49205	1	15273	15273		16.149	0	1	615620	+		25586	17106	18468	18604	25057	25057					0.07442046822893644
KLAPGLKL	8	Unmodified	_KLAPGLKL_					0	0	0			REV__ENSG00000187634|ENST00000616016|SAMD11;REV__ENSG00000102098|ENST00000251900|SCML2;REV__nc|ENSG00000146285|Q8N228-2|SCML4;REV__ENSG00000187033|ENST00000335556|SAMD7	REV__ENSG00000102098|ENST00000251900|SCML2	MULTI-MSMS	A375_MHC_IP_R2	2	420.68939208984375	2	420.289288	838.564024	0.0036162	1.5199E-06	0.21876	9.1942E-05	0.22237	9.3461E-05	420.2892008469101	43.037	0.35334	43.809	43.623	43.977	0.7724					14	6	3	0	0	0	0.16799	1	16028	16028		74.423	0	1	2689100	+		25587	17205;22035;19527;22005	18469	18605	25058	25058					0.13828457524800797
KLAPGLKL	8	Unmodified	_KLAPGLKL_					0	0	0			REV__ENSG00000187634|ENST00000616016|SAMD11;REV__ENSG00000102098|ENST00000251900|SCML2;REV__nc|ENSG00000146285|Q8N228-2|SCML4;REV__ENSG00000187033|ENST00000335556|SAMD7	REV__ENSG00000102098|ENST00000251900|SCML2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	420.289288	838.564024	0.0036162	1.5199E-06	0.21876	9.1942E-05	0.22237	9.3461E-05	420.2892008469101	43.037	0.35334	43.809	43.623	43.977	0.7724	-0.13896	0.00026983	NaN	74.423	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2689100	+		25588	17205;22035;19527;22005	18469	18605							0.13828457524800797
KLAPNLTEL	9	Unmodified	_KLAPNLTEL_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	MULTI-SECPEP	A375_MHC_IP_R1	1	500.19732666015625	2	499.797675	997.580796	-0.78331	-0.0003915	0.35636	0.00017811	-0.42695	-0.00021339	499.7977763595637	67.96	0.80949	67.96	67.654	68.463	0					32	15	3	0	0	0	0.11711	1	24607	24607		69.105	32.978	1	13540000			25589	4288	18470	18606	25059	25059					0.08190913620080664
KLAPNLTEL	9	Unmodified	_KLAPNLTEL_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	MULTI-SECPEP	A375_MHC_IP_R2	2	500.1973876953125	2	499.797675	997.580796	-0.62186	-0.0003108	0.26531	0.0001326	-0.35655	-0.0001782	499.797618031851	66.923	0.81212	67.66	67.393	68.205	0.73631					41	15	4	0	0	0	0.022401	1	25340	25340		99.755	34.52	1	13020000			25590	4288	18470	18606	25060	25060					0.08190913620080664
KLAPQLRGA	9	Unmodified	_KLAPQLRGA_					0	0	0		ENST00000265990.10_1_10:93683679-93683796:+|nuORF	ENST00000265990.10_1_10:93683679-93683796:+|nuORF	ENST00000265990.10_1_10:93683679-93683796:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	477.6981201171875	2	477.298176	952.581799	-0.46744	-0.00022311	0.02551	1.2176E-05	-0.44193	-0.00021093	477.2981412763649	25.176	0.45783	25.176	25.053	25.511	0					13	8	3	0	0	0	0.091096	1	7311	7311		52.268	7.8613	1	10365000			25591	10351	18471	18607	25061	25061					0.10361172779653316
KLAPQLRGA	9	Unmodified	_KLAPQLRGA_					0	0	0		ENST00000265990.10_1_10:93683679-93683796:+|nuORF	ENST00000265990.10_1_10:93683679-93683796:+|nuORF	ENST00000265990.10_1_10:93683679-93683796:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	477.6975402832031	2	477.298176	952.581799	-0.8683	-0.00041444	-0.14388	-6.8676E-05	-1.0122	-0.00048311	477.2979458661007	24.492	0.20299	25.136	25.009	25.212	0.64368					9	3	3	0	0	0	0.4261	1	8069	8069		37.974	1.9298	1	9855300			25592	10351	18471	18607	25062	25062					0.10361172779653316
KLAVLLIIIAI	11	Unmodified	_KLAVLLIIIAI_					0	0	0		ADCY8|p.M865I|1|0.6|ENSG00000155897|chr8:130836357-130836357|C/T|missense_variant	ADCY8|p.M865I|1|0.6|ENSG00000155897|chr8:130836357-130836357|C/T|missense_variant	ADCY8|p.M865I|1|0.6|ENSG00000155897|chr8:130836357-130836357|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	590.8256225585938	2	590.425585	1178.83662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.61	1	146.63	146.13	147.13	0.019913								0	0	0	0.1636	1	57084	57084		0	0	1				25593	60	18472	18608	25063	25063					0.25435221475345315
KLCDVTTGL	9	Unmodified	_KLCDVTTGL_					0	0	0		nc|ENSG00000164323|Q9P2B7-2|CFAP97;ENSG00000164323|ENST00000458385|CFAP97	nc|ENSG00000164323|Q9P2B7-2|CFAP97	nc|ENSG00000164323|Q9P2B7-2|CFAP97	MULTI-SECPEP	A375_MHC_IP_R1	1	475.6543884277344	2	475.254785	948.495018	-0.48877	-0.00023229	0.096778	4.5994E-05	-0.39199	-0.00018629	475.2547775079837	59.69	0.96569	59.69	59.346	60.312	0					31	18	2	0	0	0	0.20451	1	21437	21437		57.722	13.864	1	2473100			25594	6824	18473	18609	25064	25064					0.018710054429107004
KLCEGFNEV	9	Carbamidomethyl (C)	_KLC(Carbamidomethyl (C))EGFNEV_	KLC(1)EGFNEV		KLC(140)EGFNEV		0	1	0		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;ENSG00000106153|ENST00000395422|CHCHD2;ENST00000454346.1_1_1:15931445-15931535:+|nuORF;ENST00000429873.1_1_13:28681921-28682011:+|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	548.68701171875	2	548.260599	1094.50665	-0.26002	-0.00014256	0.33053	0.00018122	0.07051	3.8658E-05	548.2605340181858	45.431	1.5664	45.431	44.928	46.495	0					99	30	4	0	0	0	0.0023519	2	15889	15839;15889		140.63	58.743	1	101560000			25595	2671	18474	18610	25065;25066	25066	16				-0.03682797533747362
KLCEGFNEV	9	Carbamidomethyl (C)	_KLC(Carbamidomethyl (C))EGFNEV_	KLC(1)EGFNEV		KLC(130)EGFNEV		0	1	0		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;ENSG00000106153|ENST00000395422|CHCHD2;ENST00000454346.1_1_1:15931445-15931535:+|nuORF;ENST00000429873.1_1_13:28681921-28682011:+|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	548.6867065429688	2	548.260599	1094.50665	-0.86794	-0.00047586	0.44092	0.00024174	-0.42702	-0.00023412	548.2606199826527	44.621	1.3725	45.39	44.985	46.357	0.76909					91	26	4	0	0	0	0.010055	1	16654	16654		125.53	43.639	1	108890000			25596	2671	18474	18610	25067	25067	16				-0.03682797533747362
KLCINIFVK	9	Unmodified	_KLCINIFVK_					0	0	0			REV__PRAMEF1|p.D152N|1|0.37|ENSG00000116721|chr1:12794081-12794081|G/A|missense_variant	REV__PRAMEF1|p.D152N|1|0.37|ENSG00000116721|chr1:12794081-12794081|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	359.2898254394531	3	359.887817	1076.64162	0.15836	5.6992E-05	-0.38192	-0.00013745	-0.22356	-8.0457E-05	359.88766972786425	73.044	0.40541	73.044	72.83	73.235	0					10	7	2	0	0	0	0.79191	1	26598	26598		2.086	0.89267	1	1347400	+		25597	27832	18475	18611	25068	25068					0.10636727398650692
KLCKVIYRRKK	11	Unmodified	_KLCKVIYRRKK_					0	0	0		KATNBL1|p.R66C|2|0.23|ENSG00000134152|chr15:34153032-34153032|G/A|missense_variant	KATNBL1|p.R66C|2|0.23|ENSG00000134152|chr15:34153032-34153032|G/A|missense_variant	KATNBL1|p.R66C|2|0.23|ENSG00000134152|chr15:34153032-34153032|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	359.428466796875	4	359.4827	1433.90169	0.3216	0.00011561	0.20726	7.4508E-05	0.52887	0.00019012	359.48268337807184	44.139	1.2225	44.139	43.808	45.03	0					80	23	5	0	0	0	0.73927	1	15642	15642		0.064406	0.064406	1	16996000			25598	14190	18476	18612	25069	25069					0.20209892729485546
KLCKVIYRRKK	11	Unmodified	_KLCKVIYRRKK_					0	0	0		KATNBL1|p.R66C|2|0.23|ENSG00000134152|chr15:34153032-34153032|G/A|missense_variant	KATNBL1|p.R66C|2|0.23|ENSG00000134152|chr15:34153032-34153032|G/A|missense_variant	KATNBL1|p.R66C|2|0.23|ENSG00000134152|chr15:34153032-34153032|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		4	359.4827	1433.90169	-0.069761	-2.5078E-05	0.2725	9.7958E-05	0.20274	7.288E-05	359.48269540183986	43.274	1.112	44.046	43.623	44.735	0.7724	-0.046387	5.9393E-05	NaN	0.064406	73	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11514000			25599	14190	18476	18612							0.20209892729485546
KLCRLLGLGV	10	Unmodified	_KLCRLLGLGV_					0	0	0		nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	MULTI-MSMS	A375_MHC_IP_R1	1	358.6170654296875	3	357.895083	1070.66342	0.032224	1.1533E-05	-0.10073	-3.6052E-05	-0.06851	-2.4519E-05	357.8949730474151	24.914	0.86034	24.914	24.547	25.408	0					32	16	3	0	0	0	0.67901	1	7158	7158		14.957	0.55178	1	17055000			25600	2592	18477	18613	25070	25070					0.13091532147245744
KLDAFVEGV	9	Unmodified	_KLDAFVEGV_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-MSMS	A375_MHC_IP_R1	1	489.66839599609375	2	489.26875	976.522947	-0.14583	-7.1351E-05	-0.22995	-0.00011251	-0.37578	-0.00018386	489.26857177453985	71.242	2.3849	71.242	70.85	73.235	0					84	46	5	0	0	0	0.015356	1	25823	25823		89.401	6.8714	1	88897000			25601	6127	18478	18614	25071	25071					0.03374651694673503
KLDAFVEGV	9	Unmodified	_KLDAFVEGV_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-MSMS	A375_MHC_IP_R2	2	489.66845703125	2	489.26875	976.522947	-0.5198	-0.00025432	-0.25185	-0.00012322	-0.77165	-0.00037754	489.26859338388596	70.389	1.9763	71.124	70.642	72.618	0.73421					81	38	5	0	0	0	0.017727	2	26610	26610;26841		86.332	6.7355	1	105030000			25602	6127	18478	18614	25072;25073	25072					0.03374651694673503
KLDDCITYI	9	Unmodified	_KLDDCITYI_					0	0	0		ENSG00000136152|ENST00000349995|COG3;nc|ENSG00000136152|Q96JB2-2|COG3	ENSG00000136152|ENST00000349995|COG3	ENSG00000136152|ENST00000349995|COG3	MULTI-MSMS	A375_MHC_IP_R2	2	542.6731567382812	2	542.273175	1082.5318	-0.70308	-0.00038126	0.13599	7.3745E-05	-0.56709	-0.00030752	542.2729628009813	84.721	1.2208	85.457	84.968	86.188	0.73602					47	23	3	0	0	0	0.14858	1	32229	32229		41.956	7.8531	1	2661200			25603	4758	18479	18615	25074	25074					-0.006167427311993379
KLDDLHTLY	9	Unmodified	_KLDDLHTLY_					0	0	0		ENSG00000047932|ENST00000368498|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC	ENSG00000047932|ENST00000368498|GOPC	ENSG00000047932|ENST00000368498|GOPC	MULTI-SECPEP	A375_MHC_IP_R1	1	373.60107421875	3	373.201118	1116.58152	0.45828	0.00017103	-0.25021	-9.3377E-05	0.20807	7.7653E-05	373.20104851151984	54.389	0.65751	54.389	54.113	54.771	0					29	12	4	0	0	0	0.63749	1	19403	19403		15.739	4.2439	1	9005600			25604	1209	18480	18616	25075	25075					0.027897082691424657
KLDDLHTLY	9	Unmodified	_KLDDLHTLY_					0	0	0		ENSG00000047932|ENST00000368498|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC	ENSG00000047932|ENST00000368498|GOPC	ENSG00000047932|ENST00000368498|GOPC	MULTI-SECPEP	A375_MHC_IP_R1	1	558.6849975585938	2	559.298039	1116.58152	-0.37614	-0.00021037	-0.3003	-0.00016796	-0.67644	-0.00037833	559.298051481823	54.389	1.0128	54.389	54.113	55.126	0					42	19	4	0	0	0	0.0286	1	19441	19441		100.09	69.454	1	29507000			25605	1209	18480	18616	25076	25076					0.027897082691424657
KLDDLHTLY	9	Unmodified	_KLDDLHTLY_					0	0	0		ENSG00000047932|ENST00000368498|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC	ENSG00000047932|ENST00000368498|GOPC	ENSG00000047932|ENST00000368498|GOPC	MULTI-MSMS	A375_MHC_IP_R2	2	559.697265625	2	559.298039	1116.58152	-1.1837	-0.00066206	-0.052278	-2.9239E-05	-1.236	-0.0006913	559.2980252489424	53.628	0.61498	54.379	54.046	54.661	0.75105					31	11	4	0	0	0	0.0085749	1	20207	20207		171.09	118.82	1	23367000			25606	1209	18480	18616	25077	25077					0.027897082691424657
KLDDLHTLY	9	Unmodified	_KLDDLHTLY_					0	0	0		ENSG00000047932|ENST00000368498|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC	ENSG00000047932|ENST00000368498|GOPC	ENSG00000047932|ENST00000368498|GOPC	MULTI-MSMS	A375_MHC_IP_R2	2	373.6009826660156	3	373.201118	1116.58152	-0.092013	-3.4339E-05	-0.29593	-0.00011044	-0.38794	-0.00014478	373.20100988724516	53.579	0.61498	54.33	54.046	54.661	0.75105					30	11	4	0	0	0	0.10411	1	20215	20215		38.615	13.624	1	12448000			25607	1209	18480	18616	25078	25078					0.027897082691424657
KLDDTYIKA	9	Unmodified	_KLDDTYIKA_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-SECPEP	A375_MHC_IP_R1	1	356.5971374511719	3	356.197485	1065.57063	-0.17922	-6.3837E-05	-0.27887	-9.9334E-05	-0.45809	-0.00016317	356.1973819753577	32.907	0.40511	32.907	32.634	33.04	0					16	7	3	0	0	0	0.41434	1	10689	10689		30.703	21.727	1	4235900			25608	7279	18481	18617	25079	25079					0.04046305894826219
KLDDTYIKA	9	Unmodified	_KLDDTYIKA_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-SECPEP	A375_MHC_IP_R1	1	534.1920166015625	2	533.792589	1065.57063	-0.84448	-0.00045078	-0.099583	-5.3157E-05	-0.94406	-0.00050393	533.7925210325701	32.908	0.65781	32.908	32.684	33.342	0					30	12	4	0	0	0	0.011309	1	10659	10659		111.31	44.852	1	36129000			25609	7279	18481	18617	25080	25080					0.04046305894826219
KLDDTYIKA	9	Unmodified	_KLDDTYIKA_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-SECPEP	A375_MHC_IP_R2	2	356.597412109375	3	356.197485	1065.57063	-0.22723	-8.094E-05	0.021037	7.4932E-06	-0.2062	-7.3446E-05	356.19753811837336	32.088	0.45641	32.825	32.605	33.061	0.73691					16	8	3	0	0	0	0.47674	1	11426	11426		28.234	23.186	1	3375500			25610	7279	18481	18617	25081	25081					0.04046305894826219
KLDDTYIKA	9	Unmodified	_KLDDTYIKA_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1746215820312	2	533.792589	1065.57063	-0.77321	-0.00041274	-0.1034	-5.5195E-05	-0.87661	-0.00046793	533.7925051741303	32.13	0.50769	32.867	32.654	33.162	0.73692					28	9	4	0	0	0	0.04566	1	11372	11372		88.364	38.809	1	36756000			25611	7279	18481	18617	25082	25082					0.04046305894826219
KLDDYVYYV	9	Unmodified	_KLDDYVYYV_					0	0	0		ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	MULTI-MSMS	A375_MHC_IP_R1	1	590.1611938476562	2	589.292422	1176.57029	-0.51117	-0.00030123	0.3787	0.00022316	-0.13247	-7.8064E-05	589.2925777892804	85.194	0.76388	85.194	84.852	85.616	0					34	14	3	0	0	0	0.50355	1	31260	31260		26.268	8.1218	1	8182500			25612	7552	18482	18618	25083	25083					-0.010931138250271033
KLDDYVYYV	9	Unmodified	_KLDDYVYYV_					0	0	0		ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	MULTI-SECPEP	A375_MHC_IP_R2	2	589.6924438476562	2	589.292422	1176.57029	-0.46453	-0.00027374	0.097392	5.7393E-05	-0.36713	-0.00021635	589.2925250123632	84.504	0.60683	85.24	84.916	85.523	0.73601					31	11	3	0	0	0	0.16237	1	32109	32109		69.105	40.023	1	7961800			25613	7552	18482	18618	25084	25084					-0.010931138250271033
KLDEAFEFV	9	Unmodified	_KLDEAFEFV_					0	0	0		ENSG00000120129|ENST00000239223|DUSP1	ENSG00000120129|ENST00000239223|DUSP1	ENSG00000120129|ENST00000239223|DUSP1	MULTI-SECPEP	A375_MHC_IP_R1	1	549.6796264648438	2	549.279315	1096.54408	-0.68735	-0.00037755	1.6714	0.00091809	0.98409	0.00054054	549.2803693306464	94.945	0.86654	94.945	94.497	95.364	0					42	16	5	0	0	0	0.20451	1	34876	34876		49.554	15.153	1	7180900			25614	3650	18483	18619	25085	25085					-0.0003338299648021348
KLDEHIAYL	9	Unmodified	_KLDEHIAYL_					0	0	0		ENSG00000186871|ENST00000334463|ERCC6L	ENSG00000186871|ENST00000334463|ERCC6L	ENSG00000186871|ENST00000334463|ERCC6L	MULTI-SECPEP	A375_MHC_IP_R1	1	551.6998901367188	2	551.300581	1100.58661	-0.56766	-0.00031295	0.4008	0.00022096	-0.16686	-9.1989E-05	551.3009099905408	55.101	0.81269	55.101	54.72	55.533	0					31	15	3	0	0	0	0.058501	1	19664	19664		107.19	48.508	1	7972800			25615	8787	18484	18620	25086	25086					0.04034012131751297
KLDEHIAYL	9	Unmodified	_KLDEHIAYL_					0	0	0		ENSG00000186871|ENST00000334463|ERCC6L	ENSG00000186871|ENST00000334463|ERCC6L	ENSG00000186871|ENST00000334463|ERCC6L	MULTI-MSMS	A375_MHC_IP_R2	2	551.6568603515625	2	551.300581	1100.58661	-1.083	-0.00059705	0.0030985	1.7082E-06	-1.0799	-0.00059534	551.3007087938953	54.164	0.56014	54.915	54.609	55.169	0.75091					27	10	3	0	0	0	0.10622	1	20489	20489		49.554	15.153	1	6918300			25616	8787	18484	18620	25087	25087					0.04034012131751297
KLDEILKEI	9	Unmodified	_KLDEILKEI_					0	0	0		ENSG00000110880|ENST00000261401|CORO1C;nc|ENSG00000110880|Q9ULV4-2|CORO1C;nc|ENSG00000110880|Q9ULV4-3|CORO1C	ENSG00000110880|ENST00000261401|CORO1C	ENSG00000110880|ENST00000261401|CORO1C	MULTI-SECPEP	A375_MHC_IP_R2	2	551.2311401367188	2	550.831714	1099.64888	-0.79056	-0.00043547	0.39288	0.00021641	-0.39768	-0.00021905	550.8317546063423	77.484	0.45795	78.227	77.958	78.416	0.74293					18	8	3	0	0	0	0.28318	1	29419	29419		48.073	4.0909	1	3250300			25617	2954	18485	18621	25088	25088					0.10303738480092761
KLDESIYDV	9	Unmodified	_KLDESIYDV_					0	0	0		nc|ENSG00000196792|Q13033-2|STRN3;ENSG00000196792|ENST00000357479|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	MULTI-MSMS	A375_MHC_IP_R1	1	541.673583984375	2	541.274229	1080.53391	-0.65071	-0.00035221	-0.34104	-0.0001846	-0.99175	-0.00053681	541.2742389040744	60.998	0.76488	60.998	60.566	61.331	0					39	14	4	0	0	0	0.056914	1	21932	21932		61.602	3.8799	1	11574000			25618	9084	18486	18622	25089	25089					-0.0031399072172462184
KLDESIYDV	9	Unmodified	_KLDESIYDV_					0	0	0		nc|ENSG00000196792|Q13033-2|STRN3;ENSG00000196792|ENST00000357479|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	MULTI-SECPEP	A375_MHC_IP_R2	2	541.7150268554688	2	541.274229	1080.53391	-1.1613	-0.00062856	-0.4151	-0.00022469	-1.5764	-0.00085324	541.2742243439164	60.236	1.067	60.981	60.196	61.263	0.74503					47	20	3	0	0	0	0.16595	1	22812	22812		53.404	5.6553	1	17901000			25619	9084	18486	18622	25090	25090					-0.0031399072172462184
KLDETGVAL	9	Unmodified	_KLDETGVAL_					0	0	0		ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B	ENSG00000077097|ENST00000264331|TOP2B	ENSG00000077097|ENST00000264331|TOP2B	MULTI-MSMS	A375_MHC_IP_R1	1	474.167724609375	2	473.266207	944.517862	-0.36752	-0.00017393	0.17021	8.0555E-05	-0.19731	-9.3378E-05	473.2662048249016	50.147	0.81841	50.147	49.692	50.51	0					44	15	4	0	0	0	0.066859	1	17656	17656		57.722	6.867	1	19036000			25620	1646	18487	18623	25091	25091					0.04338347832049294
KLDETGVAL	9	Unmodified	_KLDETGVAL_					0	0	0		ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B	ENSG00000077097|ENST00000264331|TOP2B	ENSG00000077097|ENST00000264331|TOP2B	MULTI-MSMS	A375_MHC_IP_R2	2	474.1677551269531	2	473.266207	944.517862	-0.79621	-0.00037682	0.35943	0.00017011	-0.43677	-0.00020671	473.26628242852667	49.353	1.1692	50.11	49.536	50.706	0.75736					54	22	3	0	0	0	0.054426	1	18428	18428		62.573	7.7991	1	14369000			25621	1646	18487	18623	25092	25092					0.04338347832049294
KLDEYLIFK	9	Unmodified	_KLDEYLIFK_					0	0	0			REV__ENSG00000138068|ENST00000535679|SULT6B1	REV__ENSG00000138068|ENST00000535679|SULT6B1	MULTI-MSMS	A375_MHC_IP_R2	2	390.6253356933594	3	390.225264	1167.65396	-0.15089	-5.8882E-05	0.20465	7.986E-05	0.053758	2.0978E-05	390.22533729188234	83.133	0.40372	83.873	83.645	84.049	0.73962					12	7	2	0	0	0	0.58268	1	31632	31632		15.739	4.2207	1	1913500	+		25622	19058	18488	18624	25093	25093					0.07684042342702924
KLDEYLIFK	9	Unmodified	_KLDEYLIFK_					0	0	0			REV__ENSG00000138068|ENST00000535679|SULT6B1	REV__ENSG00000138068|ENST00000535679|SULT6B1	MULTI-MATCH	A375_MHC_IP_R1	1		3	390.225264	1167.65396	0.0369	1.4399E-05	0.20941	8.1716E-05	0.24631	9.6115E-05	390.2253744278972	83.926	0.40499	83.926	83.786	84.191	0	0.026503	4.5352E-06	NaN	15.739	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	822450	+		25623	19058	18488	18624							0.07684042342702924
KLDEYLIFK	9	Unmodified	_KLDEYLIFK_					0	0	0			REV__ENSG00000138068|ENST00000535679|SULT6B1	REV__ENSG00000138068|ENST00000535679|SULT6B1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	390.225264	1167.65396	-0.15089	-5.8882E-05	0.20465	7.986E-05	0.053758	2.0978E-05	390.22533729188234	83.133	0.40372	83.873	83.645	84.049	0.73962	-0.026503	-1.0319E-06	NaN	15.739	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1913500	+		25624	19058	18488	18624							0.07684042342702924
KLDKDNLSY	9	Unmodified	_KLDKDNLSY_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	A375_MHC_IP_R1	1	548.68701171875	2	548.287671	1094.56079	-0.66271	-0.00036335	-1.867	-0.0010237	-2.5298	-0.001387	548.2874224620376	27.213	0.50483	27.213	26.978	27.482	0					23	8	5	0	0	0	0.11638	1	8222	8222		47.732	3.8737	1	8841100			25625	6583	18489	18625	25094	25094					0.01729117889499321
KLDKLLQEA	9	Unmodified	_KLDKLLQEA_					0	0	0		nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4	nc|ENSG00000069020|O15021-2|MAST4	nc|ENSG00000069020|O15021-2|MAST4	MULTI-MSMS	A375_MHC_IP_R2	2	529.7149658203125	2	529.316232	1056.61791	-0.74736	-0.00039559	-0.8799	-0.00046575	-1.6273	-0.00086134	529.3156502976306	41.349	0.30301	42.124	41.946	42.249	0.77451					8	5	2	0	0	0	0.39657	1	15381	15381		24.882	5.2556	1	1578600			25626	1472	18490	18626	25095	25095					0.09186585165844008
KLDLRGTW	8	Unmodified	_KLDLRGTW_					0	0	0			REV__ENST00000599599.5_2_19:57125204-57132656:+|nuORF	REV__ENST00000599599.5_2_19:57125204-57132656:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	495.18218994140625	2	494.782359	987.550165	-0.81007	-0.00040081	0.41366	0.00020467	-0.39641	-0.00019614	494.7822538739537	29.478	0.30416	29.478	29.302	29.607	0					14	5	3	0	0	0	0.51146	1	9225	9225		61.357	19.518	1	102560000	+		25627	26494	18491	18627	25096	25096					0.05589180025708629
KLDLRGTW	8	Unmodified	_KLDLRGTW_					0	0	0			REV__ENST00000599599.5_2_19:57125204-57132656:+|nuORF	REV__ENST00000599599.5_2_19:57125204-57132656:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	495.18182373046875	2	494.782359	987.550165	-1.0858	-0.00053723	0.057624	2.8511E-05	-1.0282	-0.00050872	494.7822531840132	28.66	0.35051	29.358	29.183	29.534	0.69872					12	6	2	0	0	0	0.36486	1	9916	9916		61.357	11.424	1	94684000	+		25628	26494	18491	18627	25097	25097					0.05589180025708629
KLDPFLTPY	9	Unmodified	_KLDPFLTPY_					0	0	0		nc|ENSG999|O00370|L1_ORF2;L1PA5_dup4054|chr5:147183212-147184419:-|1.0898619934076978|0.3037908791454333|1.84|459.0|11|2|sense;chr3:98867438-98881540|204|17.5|0.23|6.26|-|1|TE_info:L1PA5,L1PA5_dup2059,L1,LINE,acceptor,-,98865721,98867438|None,DCBLD2|4	nc|ENSG999|O00370|L1_ORF2	nc|ENSG999|O00370|L1_ORF2	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6997680664062	2	547.30005	1092.58555	-0.42104	-0.00023044	-0.3329	-0.0001822	-0.75394	-0.00041263	547.2998035624613	92.143	0.6067	92.143	91.857	92.463	0					25	11	3	0	0	0	0.24324	1	33826	33826		53.833	24.751	1	3618700			25629	14975	18492	18628	25098	25098					0.04295797762847542
KLDPFLTPY	9	Unmodified	_KLDPFLTPY_					0	0	0		nc|ENSG999|O00370|L1_ORF2;L1PA5_dup4054|chr5:147183212-147184419:-|1.0898619934076978|0.3037908791454333|1.84|459.0|11|2|sense;chr3:98867438-98881540|204|17.5|0.23|6.26|-|1|TE_info:L1PA5,L1PA5_dup2059,L1,LINE,acceptor,-,98865721,98867438|None,DCBLD2|4	nc|ENSG999|O00370|L1_ORF2	nc|ENSG999|O00370|L1_ORF2	MULTI-SECPEP	A375_MHC_IP_R2	2	547.6995849609375	2	547.30005	1092.58555	-0.69172	-0.00037858	0.58778	0.00032169	-0.10394	-5.6888E-05	547.3001167573022	91.273	0.65982	92.007	91.717	92.376	0.73451					26	12	3	0	0	0	0.34746	1	34709	34709		38.176	4.7307	1	3091300			25630	14975	18492	18628	25099	25099					0.04295797762847542
KLDPKTMKV	9	Unmodified	_KLDPKTMKV_					0	0	0		nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	MULTI-MSMS	A375_MHC_IP_R1	1	354.2938232421875	3	353.87921	1058.6158	-0.057749	-2.0436E-05	-0.35501	-0.00012563	-0.41276	-0.00014607	353.8790537804704	24.992	0.50509	24.992	24.852	25.357	0					17	9	2	0	0	0	0.17338	3	7193	7193;7257;7344		30.703	20.553	1	14967000			25631	1309	18493	18629	25100;25101;25102	25100					0.08883833156392029
KLDPKTMKV	9	Unmodified	_KLDPKTMKV_					0	0	0		nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	MULTI-SECPEP	A375_MHC_IP_R2	2	354.27899169921875	3	353.87921	1058.6158	-0.53288	-0.00018858	-1.0944	-0.00038728	-1.6273	-0.00057586	353.87919408427217	24.34	0.55814	24.983	24.806	25.364	0.64368					15	10	3	0	0	0	0.14572	1	8007	8007		29.437	19.893	1	14589000			25632	1309	18493	18629	25103	25103					0.08883833156392029
KLDPNKAYI	9	Unmodified	_KLDPNKAYI_					0	0	0		nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7	nc|ENSG00000107099|Q8NF50-2|DOCK8;nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000107099|Q8NF50-2|DOCK8	MSMS	A375_MHC_IP_R1	1	531.3310546875	2	531.303124	1060.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.333	1	33.333	32.833	33.833	0								0	0	0	0.15386	1	10871	10871		15.248	3.7538	1				25633	2724;3411	18494	18630	25104	25104					0.06382315994369492
KLDPTKTTL	9	Unmodified	_KLDPTKTTL_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000522665.5_1_8:134254200-134261004:-|nuORF;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	A375_MHC_IP_R1	1	509.2026062011719	2	508.802957	1015.59136	-0.71839	-0.00036552	0.024696	1.2565E-05	-0.69369	-0.00035295	508.8029171180938	30.677	1.3158	30.677	30.351	31.667	0					69	25	5	0	0	0	0.0086813	1	9712	9712		171.46	38.412	1	176490000			25634	2511	18495	18631	25105	25105					0.08418896274520193
KLDPTKTTL	9	Unmodified	_KLDPTKTTL_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000522665.5_1_8:134254200-134261004:-|nuORF;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	A375_MHC_IP_R2	2	509.2024841308594	2	508.802957	1015.59136	-1.0885	-0.00055383	0.22228	0.0001131	-0.86622	-0.00044073	508.8030356104773	29.864	1.7191	30.563	30.236	31.955	0.69872					79	33	5	0	0	0	0.0097232	1	10400	10400		184.36	62.821	1	179810000			25635	2511	18495	18631	25106	25106					0.08418896274520193
KLDPYVQRL	9	Unmodified	_KLDPYVQRL_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	A375_MHC_IP_R1	1	566.729736328125	2	566.329673	1130.64479	-0.15668	-8.8731E-05	0.18698	0.00010589	0.030302	1.7161E-05	566.3297733016857	43.112	0.45913	43.112	42.891	43.351	0					19	8	3	0	0	0	0.15393	1	14980	14980		55.235	9.535	1	4402900			25636	9114	18496	18632	25107	25107					0.08469693777033172
KLDPYVQRL	9	Unmodified	_KLDPYVQRL_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	A375_MHC_IP_R2	2	566.7294921875	2	566.329673	1130.64479	-0.35292	-0.00019987	0.19549	0.00011071	-0.15743	-8.9158E-05	566.3299976928864	42.25	0.56112	43.022	42.656	43.218	0.7724					19	10	3	0	0	0	0.47206	1	15704	15704		41.956	15.687	1	4066900			25637	9114	18496	18632	25108	25108					0.08469693777033172
KLDQDLNEV	9	Unmodified	_KLDQDLNEV_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	A375_MHC_IP_R1	1	537.6766967773438	2	537.277303	1072.54005	-0.57001	-0.00030625	0.032886	1.7669E-05	-0.53712	-0.00028858	537.277318113307	40.584	1.1146	40.584	40.151	41.266	0					40	21	3	0	0	0	0.007896	1	13916	13916		129.77	10.878	1	60941000			25638	2781	18497	18633	25109	25109					0.006685275098107013
KLDQDLNEV	9	Unmodified	_KLDQDLNEV_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	A375_MHC_IP_R2	2	537.6766357421875	2	537.277303	1072.54005	-0.91527	-0.00049175	0.1649	8.8595E-05	-0.75038	-0.00040316	537.277374634938	39.826	0.86333	40.601	40.32	41.183	0.77451					28	16	2	0	0	0	0.007896	1	14688	14688		129.77	10.878	1	57154000			25639	2781	18497	18633	25110	25110					0.006685275098107013
KLDQVIIHV	9	Unmodified	_KLDQVIIHV_					0	0	0		nc|ENSG00000135838|Q9BXD5-4|NPL;nc|ENSG00000135838|Q9BXD5-3|NPL;ENSG00000135838|ENST00000367553|NPL	nc|ENSG00000135838|Q9BXD5-4|NPL	nc|ENSG00000135838|Q9BXD5-4|NPL	MULTI-SECPEP	A375_MHC_IP_R1	1	533.2265625	2	532.826766	1063.63898	-0.71465	-0.00038078	0.16159	8.6097E-05	-0.55306	-0.00029469	532.8267942098315	58.716	0.50922	58.716	58.481	58.99	0					21	9	3	0	0	0	0.0575	1	21096	21096		86.332	50.205	1	5760100			25640	4719	18498	18634	25111	25111					0.1097059526537123
KLDQVIIHV	9	Unmodified	_KLDQVIIHV_					0	0	0		nc|ENSG00000135838|Q9BXD5-4|NPL;nc|ENSG00000135838|Q9BXD5-3|NPL;ENSG00000135838|ENST00000367553|NPL	nc|ENSG00000135838|Q9BXD5-4|NPL	nc|ENSG00000135838|Q9BXD5-4|NPL	MULTI-SECPEP	A375_MHC_IP_R2	2	533.2263793945312	2	532.826766	1063.63898	-1.01	-0.00053815	-0.098146	-5.2295E-05	-1.1081	-0.00059044	532.8266592801887	57.703	0.55863	58.452	58.17	58.729	0.74894					21	10	3	0	0	0	0.10362	1	21834	21834		72.968	33.018	1	6589600			25641	4719	18498	18634	25112	25112					0.1097059526537123
KLDTHALLLEA	11	Unmodified	_KLDTHALLLEA_					0	0	0			REV__ENSG00000187905|ENST00000442047|LRRC74B	REV__ENSG00000187905|ENST00000442047|LRRC74B	MULTI-MSMS	A375_MHC_IP_R2	2	408.9714050292969	3	408.571322	1222.69214	-0.17999	-7.3537E-05	-0.045801	-1.8713E-05	-0.22579	-9.225E-05	408.5713196153258	50.187	0.76022	50.941	50.702	51.462	0.75406					31	14	4	0	0	0	0.38771	1	18866	18866		25.997	5.1263	1	6220600	+		25642	22057	18499	18635	25113	25113					0.08969928257397441
KLDVDAPRL	9	Unmodified	_KLDVDAPRL_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-SECPEP	A375_MHC_IP_R1	1	514.200439453125	2	513.800749	1025.58694	-0.57748	-0.00029671	-0.1324	-6.8025E-05	-0.70987	-0.00036473	513.8006112329788	46.52	0.4539	46.52	46.295	46.749	0					14	8	2	0	0	0	0.24324	1	16334	16334		38.176	10.547	1	5294500			25643	4204	18500	18636	25114	25114					0.07517431851601941
KLDVDAPRL	9	Unmodified	_KLDVDAPRL_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-SECPEP	A375_MHC_IP_R2	2	514.2003784179688	2	513.800749	1025.58694	-0.76196	-0.00039149	-0.12996	-6.6775E-05	-0.89192	-0.00045827	513.8006993417914	45.662	0.55374	46.427	46.15	46.704	0.76519					18	10	2	0	0	0	0.32966	1	17081	17081		42.312	29.27	1	4584700			25644	4204	18500	18636	25115	25115					0.07517431851601941
KLDVGNAEV	9	Unmodified	_KLDVGNAEV_					0	0	0		ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	MULTI-MSMS	A375_MHC_IP_R1	1	473.15606689453125	2	472.756007	943.497461	-0.08297	-3.9225E-05	-0.12342	-5.8348E-05	-0.20639	-9.7573E-05	472.7559340079389	38.857	2.3365	38.857	38.526	40.863	0					101	45	4	0	0	0	0.0096896	1	13161	13161		110.67	35.746	1	364790000			25645	8697	18501	18637	25116	25116					0.023451771722420744
KLDVGNAEV	9	Unmodified	_KLDVGNAEV_					0	0	0		ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	MULTI-SECPEP	A375_MHC_IP_R1	1	944.7316284179688	1	944.504737	943.497461	0.38934	0.00036773	-0.4515	-0.00042645	-0.062163	-5.8714E-05	944.5043118879048	38.838	0.6605	38.838	38.628	39.289	0					30	12	4	0	0	0	4.603E-05	1	13231	13231		179.28	71.286	1	27623000			25646	8697	18501	18637	25117	25117					0.023451771722420744
KLDVGNAEV	9	Unmodified	_KLDVGNAEV_					0	0	0		ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	MULTI-MSMS	A375_MHC_IP_R2	2	473.15545654296875	2	472.756007	943.497461	-0.81265	-0.00038419	0.18712	8.8462E-05	-0.62553	-0.00029573	472.7560917095862	37.991	1.8876	38.765	38.432	40.32	0.77451					88	36	5	0	0	0	0.0092471	1	13903	13903		103.35	28.425	1	258620000			25647	8697	18501	18637	25118	25118					0.023451771722420744
KLDVGNAEV	9	Unmodified	_KLDVGNAEV_					0	0	0		ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	MULTI-SECPEP	A375_MHC_IP_R2	2	944.2296142578125	1	944.504737	943.497461	-0.43595	-0.00041176	-0.071904	-6.7913E-05	-0.50785	-0.00047967	944.5046414993261	38.004	0.66527	38.779	38.585	39.25	0.77451					27	12	3	0	0	0	0.11887	1	14054	14054		71.708	35.581	1	27469000			25648	8697	18501	18637	25119	25119					0.023451771722420744
KLDVGQKKL	9	Unmodified	_KLDVGQKKL_					0	0	0			REV__tr|U7SUL7|U7SUL7_FUSNUD-methioninetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01219PE=3SV=1	REV__tr|U7SUL7|U7SUL7_FUSNUD-methioninetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01219PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	515.2265625	2	514.826766	1027.63898	-0.67989	-0.00035003	0.10326	5.3162E-05	-0.57663	-0.00029686	514.8268878353505	46.182	0.35283	46.947	46.755	47.108	0.76519					10	6	2	0	0	0	0.71071	1	17310	17310		10.151	1.4052	1	3130000	+		25649	28566	18502	18638	25120	25120					0.12626595265396645
KLDYGQHVV	9	Unmodified	_KLDYGQHVV_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-SECPEP	A375_MHC_IP_R1	1	530.1844482421875	2	529.785099	1057.55564	-0.89047	-0.00047176	0.25193	0.00013347	-0.63854	-0.00033829	529.785116991384	30.484	0.60633	30.484	30.251	30.857	0					24	11	3	0	0	0	0.21838	1	9723	9723		74.2	53.785	1	2881600			25650	5252	18503	18639	25121	25121					0.029168588175252808
KLDYGQHVV	9	Unmodified	_KLDYGQHVV_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	A375_MHC_IP_R2	2	530.1842041015625	2	529.785099	1057.55564	-1.0158	-0.00053815	0.0078001	4.1324E-06	-1.008	-0.00053401	529.7850925377887	29.864	0.60477	30.563	30.134	30.739	0.69872					16	11	2	0	0	0	0.056914	1	10431	10431		61.602	42.163	1	4152500			25651	5252	18503	18639	25122	25122					0.029168588175252808
KLEAIEFSTKK	11	Unmodified	_KLEAIEFSTKK_					0	0	0			REV__ENSG00000127337|ENST00000247843|YEATS4	REV__ENSG00000127337|ENST00000247843|YEATS4	MULTI-MSMS	A375_MHC_IP_R1	1	431.91375732421875	3	431.918611	1292.734	-0.16546	-7.1464E-05	-0.20682	-8.933E-05	-0.37228	-0.00016079	431.91854102923526	33.402	0.40734	33.402	33.19	33.597	0					18	7	3	0	0	0	0.73354	1	10853	10853		5.5233	2.1676	1	7111100	+		25652	18416	18504	18640	25123	25123					0.09934483945880856
KLEEILIEYFF	11	Unmodified	_KLEEILIEYFF_					0	0	0			REV__tr|U7SRE1|U7SRE1_FUSNUYbgI/familydinuclearmetalcenterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01724PE=3SV=1	REV__tr|U7SRE1|U7SRE1_FUSNUYbgI/familydinuclearmetalcenterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01724PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	481.6623840332031	3	481.930516	1442.76972	-0.60185	-0.00029005	2.4949	0.0012024	1.8931	0.00091234	482.2652922803667	131.93	0.30159	131.93	131.83	132.13	0					6	5	2	0	0	0	0.99971	1	50917	50917		3.8459	3.4792	1	1233200	+		25653	28394	18505	18641	25124	25124					0.06604521402891805
KLEEKRKENIK	11	Unmodified	_KLEEKRKENIK_					0	0	0			REV__ENSG00000164114|ENST00000311277|MAP9	REV__ENSG00000164114|ENST00000311277|MAP9	MULTI-MSMS	A375_MHC_IP_R1	1	472.68359375	3	472.284064	1413.83036	-0.66844	-0.00031569	-0.65353	-0.00030865	-1.322	-0.00062435	472.2836553186912	132.18	1.4628	132.18	131.13	132.59	0					107	28	5	0	0	0	0.73679	1	50863	50863		2.4348	1.22	1	80566000	+		25654	20453	18506	18642	25125	25125					0.14000051505854572
KLEEKRKENIK	11	Unmodified	_KLEEKRKENIK_					0	0	0			REV__ENSG00000164114|ENST00000311277|MAP9	REV__ENSG00000164114|ENST00000311277|MAP9	MULTI-SECPEP	A375_MHC_IP_R1	1	472.68359375	3	472.284064	1413.83036	-0.66844	-0.00031569	-0.65353	-0.00030865	-1.322	-0.00062435	472.2836553186912	132.18	1.4628	132.18	131.13	132.59	0					107	28	5	0	0	0	1.0005	1	50863	50863		2.4348	1.22	1	80566000	+		25655	20453	18506	18642	25126	25126					0.14000051505854572
KLEEKRKENIK	11	Unmodified	_KLEEKRKENIK_					0	0	0			REV__ENSG00000164114|ENST00000311277|MAP9	REV__ENSG00000164114|ENST00000311277|MAP9	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	472.284064	1413.83036	-0.54206	-0.00025601	-0.63993	-0.00030223	-1.182	-0.00055824	472.28367885012824	131.99	1.372	132.18	131.24	132.61	0.18953	-0.0035313	7.2648E-06	NaN	2.4348	99	26	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100870000	+		25656	20453	18506	18642							0.14000051505854572
KLEERKVIERA	11	Unmodified	_KLEERKVIERA_					0	0	0		tr|U7SYZ0|U7SYZ0_FUSNUResponseregulatorNasTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00817PE=4SV=1	tr|U7SYZ0|U7SYZ0_FUSNUResponseregulatorNasTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00817PE=4SV=1	tr|U7SYZ0|U7SYZ0_FUSNUResponseregulatorNasTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00817PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	458.0077819824219	3	457.608659	1369.80415	-0.48922	-0.00022387	-0.59521	-0.00027237	-1.0844	-0.00049624	457.60830094972243	132.4	2.489	132.4	131.83	134.32	0					165	48	5	0	0	0	0.73828	1	50959	50959		1.0136	0.50762	1	169830000			25657	29852	18507	18643	25127	25127					0.13403782334376046
KLEERKVIERA	11	Unmodified	_KLEERKVIERA_					0	0	0		tr|U7SYZ0|U7SYZ0_FUSNUResponseregulatorNasTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00817PE=4SV=1	tr|U7SYZ0|U7SYZ0_FUSNUResponseregulatorNasTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00817PE=4SV=1	tr|U7SYZ0|U7SYZ0_FUSNUResponseregulatorNasTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00817PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	686.3085327148438	2	685.90935	1369.80415	-0.8703	-0.00059695	-0.47376	-0.00032496	-1.3441	-0.0009219	685.908878416093	132.36	4.4714	132.36	131.78	136.25	0					239	87	6	0	0	0	0.73698	1	51137	51137		4.897	3.5675	1	389660000			25658	29852	18507	18643	25128	25128					0.13403782334376046
KLEERKVIERA	11	Unmodified	_KLEERKVIERA_					0	0	0		tr|U7SYZ0|U7SYZ0_FUSNUResponseregulatorNasTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00817PE=4SV=1	tr|U7SYZ0|U7SYZ0_FUSNUResponseregulatorNasTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00817PE=4SV=1	tr|U7SYZ0|U7SYZ0_FUSNUResponseregulatorNasTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00817PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	685.90935	1369.80415	-0.8703	-0.00059695	-0.47376	-0.00032496	-1.3441	-0.0009219	685.908878416093	132.36	4.4714	132.36	131.78	136.25	0	-0.035548	0.000241	NaN	4.897	239	87	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	389660000			25659	29852	18507	18643							0.13403782334376046
KLEERKVIERA	11	Unmodified	_KLEERKVIERA_					0	0	0		tr|U7SYZ0|U7SYZ0_FUSNUResponseregulatorNasTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00817PE=4SV=1	tr|U7SYZ0|U7SYZ0_FUSNUResponseregulatorNasTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00817PE=4SV=1	tr|U7SYZ0|U7SYZ0_FUSNUResponseregulatorNasTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00817PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	685.90935	1369.80415	-0.61539	-0.0004221	-0.7867	-0.00053961	-1.4021	-0.0009617	685.9086733054746	132.24	3.7623	132.43	132	135.76	0.18953	0.035548	-0.0001883	NaN	4.897	209	73	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	319930000			25660	29852	18507	18643							0.13403782334376046
KLEERKVIERA	11	Unmodified	_KLEERKVIERA_					0	0	0		tr|U7SYZ0|U7SYZ0_FUSNUResponseregulatorNasTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00817PE=4SV=1	tr|U7SYZ0|U7SYZ0_FUSNUResponseregulatorNasTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00817PE=4SV=1	tr|U7SYZ0|U7SYZ0_FUSNUResponseregulatorNasTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00817PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	457.608659	1369.80415	-0.26188	-0.00011984	-0.85678	-0.00039207	-1.1187	-0.00051191	457.60817913012636	132.27	2.0831	132.46	131.95	134.03	0.18954	0.0281	-0.00012419	NaN	1.0136	150	40	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136340000			25661	29852	18507	18643							0.13403782334376046
KLEERLYSV	9	Unmodified	_KLEERLYSV_					0	0	0		ENST00000528558.1_1_8:145677565-145687797:-|nuORF;ENSG00000187954|ENST00000530374|ZFTRAF1	ENST00000528558.1_1_8:145677565-145687797:-|nuORF	ENST00000528558.1_1_8:145677565-145687797:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	568.7033081054688	2	568.819138	1135.62372	-0.39433	-0.0002243	-0.46181	-0.00026269	-0.85614	-0.00048699	568.8189467554427	40.06	0.35443	40.834	40.626	40.98	0.77451					11	6	2	0	0	0	0.3697	1	14811	14811		43.982	17.714	1	2550900			25662	8868	18508	18644	25129	25129					0.061336836774898984
KLEKPLIASL	10	Unmodified	_KLEKPLIASL_					0	0	0			REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	MULTI-MSMS	A375_MHC_IP_R2	2	371.5807800292969	3	371.241025	1110.70125	-0.30714	-0.00011402	0.98017	0.00036388	0.67304	0.00024986	371.57636791519224	28.902	2.6698	29.6	28.777	31.447	0.69872					185	52	5	0	0	0	0.60385	2	9937	9937;10264		20.581	3.5324	1	149720000	+		25663	27323	18509	18645	25130;25131	25130					0.15032321613693966
KLEKRKLKF	9	Unmodified	_KLEKRKLKF_					0	0	0			REV__ENSG00000123983|ENST00000357430|ACSL3	REV__ENSG00000123983|ENST00000357430|ACSL3	MULTI-SECPEP	A375_MHC_IP_R2	2	595.0322265625	2	595.392608	1188.77066	-0.48534	-0.00028897	-1.115	-0.00066388	-1.6004	-0.00095284	595.3918199499124	89.129	0.29937	89.861	89.735	90.035	0.7318					8	5	2	0	0	0	0.81254	1	33919	33919		0.52476	0.52476	1	1000100	+		25664	18265	18510	18646	25132	25132					0.18382825353091903
KLELGKKATK	10	Unmodified	_KLELGKKATK_					0	0	0			REV__ENSG00000053372|ENST00000330263|MRTO4	REV__ENSG00000053372|ENST00000330263|MRTO4	MSMS	A375_MHC_IP_R2	2	372.6015625	3	372.576408	1114.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.584	1	43.357	42.857	43.857	0.7724								0	0	0	0.15597	1	15845	15845		1.4551	0.38366	1		+		25665	16396	18511	18647	25133	25133					0.1546283984521324
KLERKVKKKRI	11	Unmodified	_KLERKVKKKRI_					0	0	0		ENST00000404867.7_1_5:168093318-168093375:-|nuORF	ENST00000404867.7_1_5:168093318-168093375:-|nuORF	ENST00000404867.7_1_5:168093318-168093375:-|nuORF	MSMS	A375_MHC_IP_R1	1	713.4938354492188	2	713.490645	1424.96674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.82	1	120.82	120.32	121.32	0								0	0	0	0.16339	1	44801	44801		1.0715	0.76443	1				25666	11585	18512	18648	25134	25134					0.27125210526992305
KLERTTPRRV	10	Unmodified	_KLERTTPRRV_					0	0	0		CDC20B|p.A9T|1|0.38|ENSG00000164287|chr5:55172976-55172976|C/T|missense_variant	CDC20B|p.A9T|1|0.38|ENSG00000164287|chr5:55172976-55172976|C/T|missense_variant	CDC20B|p.A9T|1|0.38|ENSG00000164287|chr5:55172976-55172976|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	628.78173828125	2	628.383303	1254.75205	-0.82258	-0.0005169	-0.72227	-0.00045386	-1.5449	-0.00097076	628.382699428159	130.08	1.9267	130.08	129.6	131.53	0					103	37	4	0	0	0	0.71466	1	50254	50254		5.7319	2.1354	1	122090000			25667	342	18513	18649	25135	25135					0.13486663711250912
KLERVAFSL	9	Unmodified	_KLERVAFSL_					0	0	0			REV__tr|U7SJ06|U7SJ06_FUSNUPhosphoglucomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02050PE=3SV=1	REV__tr|U7SJ06|U7SJ06_FUSNUPhosphoglucomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02050PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	531.3846435546875	2	531.818941	1061.62333	-0.87651	-0.00046614	-2.4829	-0.0013205	-3.3595	-0.0017866	531.8168656979219	133.89	0.35553	133.89	133.76	134.12	0					11	6	2	0	0	0	0.78798	1	51603	51603		7.2892	2.96	1	4914100	+		25668	28221	18514	18650	25136	25136					0.09498308748334239
KLESELKSL	9	Unmodified	_KLESELKSL_					0	0	0		nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1;nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-3|GOLGB1	nc|ENSG00000173230|Q14789-3|GOLGB1	MULTI-SECPEP	A375_MHC_IP_R1	1	524.2080078125	2	523.808239	1045.60193	-0.87083	-0.00045615	0.62231	0.00032597	-0.24851	-0.00013017	523.8086550162462	29.123	0.35664	29.123	28.996	29.353	0					8	6	2	0	0	0	0.47674	1	9105	9105		18.373	3.1246	1	4032800			25669	7780	18515	18651	25137	25137					0.08094878928932303
KLESRSKYKKE	11	Unmodified	_KLESRSKYKKE_					0	0	0		U2SURP|p.D911Y|1|0.26|ENSG00000163714|chr3:143053751-143053751|G/T|missense_variant	U2SURP|p.D911Y|1|0.26|ENSG00000163714|chr3:143053751-143053751|G/T|missense_variant	U2SURP|p.D911Y|1|0.26|ENSG00000163714|chr3:143053751-143053751|G/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	698.8007202148438	2	698.401358	1394.78816	-0.62674	-0.00043772	-0.92311	-0.0006447	-1.5499	-0.0010824	698.400599129035	133.36	0.55638	133.53	133.35	133.91	0.16487					17	10	2	0	0	0	0.73672	1	52486	52486		2.4985	1.169	1	6767400			25670	30103	18516	18652	25138	25138					0.10656076097461664
KLESRSKYKKE	11	Unmodified	_KLESRSKYKKE_					0	0	0		U2SURP|p.D911Y|1|0.26|ENSG00000163714|chr3:143053751-143053751|G/T|missense_variant	U2SURP|p.D911Y|1|0.26|ENSG00000163714|chr3:143053751-143053751|G/T|missense_variant	U2SURP|p.D911Y|1|0.26|ENSG00000163714|chr3:143053751-143053751|G/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	698.401358	1394.78816	-0.87077	-0.00060815	-0.56963	-0.00039783	-1.4404	-0.001006	698.400971244609	133.46	0.45926	133.46	133.25	133.71	0	-0.031481	0.00022708	NaN	2.4985	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6141300			25671	30103	18516	18652							0.10656076097461664
KLESRSKYKKE	11	Unmodified	_KLESRSKYKKE_					0	0	0		U2SURP|p.D911Y|1|0.26|ENSG00000163714|chr3:143053751-143053751|G/T|missense_variant	U2SURP|p.D911Y|1|0.26|ENSG00000163714|chr3:143053751-143053751|G/T|missense_variant	U2SURP|p.D911Y|1|0.26|ENSG00000163714|chr3:143053751-143053751|G/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	698.401358	1394.78816	-0.62674	-0.00043772	-0.92311	-0.0006447	-1.5499	-0.0010824	698.400599129035	133.36	0.55638	133.53	133.35	133.91	0.16487	0.031481	-0.00026666	NaN	2.4985	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6767400			25672	30103	18516	18652							0.10656076097461664
KLETMMCVSY	10	Unmodified	_KLETMMCVSY_					0	0	0		nc|ENSG00000214595|Q6ZMW3-2|EML6;ENSG00000214595|ENST00000356458|EML6	nc|ENSG00000214595|Q6ZMW3-2|EML6	nc|ENSG00000214595|Q6ZMW3-2|EML6	MULTI-MSMS	A375_MHC_IP_R1	1	602.7416381835938	2	602.77417	1203.53379	-0.15484	-9.3333E-05	0.098659	5.9469E-05	-0.056181	-3.3865E-05	603.2754674446555	106.83	0.30672	106.83	106.68	106.98	0					7	5	2	0	0	0	0.70793	1	39156	39156		8.7454	8.7454	1	837880			25673	9620	18517	18653	25139	25139					-0.059837733092308554
KLETSIREL	9	Unmodified	_KLETSIREL_					0	0	0		ENST00000540889.1_1_12:131283048-131285998:-|nuORF;nc|ENSG00000111450|P32856-3|STX2;nc|ENSG00000111450|P32856-2|STX2;ENSG00000111450|ENST00000392373|STX2;nc|ENSG00000099365|P61266-2|STX1B;ENSG00000099365|ENST00000215095|STX1B	ENST00000540889.1_1_12:131283048-131285998:-|nuORF	ENST00000540889.1_1_12:131283048-131285998:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	545.2186279296875	2	544.819138	1087.62372	-0.50442	-0.00027482	-0.096448	-5.2547E-05	-0.60087	-0.00032736	544.8188127031278	43.613	0.45853	43.613	43.4	43.859	0					12	8	2	0	0	0	0.67332	1	15211	15211		9.3831	1.473	1	2766800			25674	2994	18518	18654	25140	25140					0.08341683677531364
KLEYYKCV	8	Unmodified	_KLEYYKCV_					0	0	0		ENST00000524141.5_1_8:48625456-48625810:+|nuORF	ENST00000524141.5_1_8:48625456-48625810:+|nuORF	ENST00000524141.5_1_8:48625456-48625810:+|nuORF	MSMS	A375_MHC_IP_R1	1	523.2109985351562	2	523.272978	1044.5314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.21	1	131.21	130.71	131.71	0								0	0	0	0.16876	1	50586	50586		11.64	2.2572	1				25675	13056	18519	18655	25141	25141					0.01091882339642325
KLFAGINSV	9	Unmodified	_KLFAGINSV_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-SECPEP	A375_MHC_IP_R1	1	475.17919921875	2	474.779285	947.544017	0.019925	9.46E-06	0.085581	4.0632E-05	0.10551	5.0092E-05	474.77911303020846	69.537	0.86102	69.537	69.224	70.085	0					34	16	4	0	0	0	0.025235	1	25213	25213		96.111	28.03	1	4228300			25676	8815	18520	18656	25142	25142					0.06814661794192034
KLFAGINSV	9	Unmodified	_KLFAGINSV_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-SECPEP	A375_MHC_IP_R2	2	475.1788635253906	2	474.779285	947.544017	-0.43496	-0.00020651	0.040305	1.9136E-05	-0.39466	-0.00018738	474.77924172758	68.511	0.7093	69.247	69.018	69.728	0.73511					31	13	3	0	0	0	0.027983	1	25953	25953		92.491	37.718	1	4412500			25677	8815	18520	18656	25143	25143					0.06814661794192034
KLFANIAEV	9	Unmodified	_KLFANIAEV_					0	0	0		nc|ENSG00000120669|Q9NX45-2|SOHLH2;ENSG00000120669|ENST00000379881|SOHLH2;nc|ENSG00000120669|Q9NX45-3|SOHLH2	nc|ENSG00000120669|Q9NX45-2|SOHLH2	nc|ENSG00000120669|Q9NX45-2|SOHLH2	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1919860839844	2	502.792392	1003.57023	-0.56168	-0.00028241	0.067242	3.3809E-05	-0.49444	-0.0002486	502.79238468727664	78.866	0.81152	79.611	79.185	79.997	0.74473					32	15	3	0	0	0	0.083712	1	29911	29911		74.929	26.583	1	4999600			25678	3674	18521	18657	25144	25144					0.06858930965654508
KLFCITLTL	9	Unmodified	_KLFCITLTL_					0	0	0			REV__ENST00000520356.5_2_8:135490348-135490501:-|nuORF	REV__ENST00000520356.5_2_8:135490348-135490501:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	526.7136840820312	2	526.314646	1050.61474	-0.52336	-0.00027545	-0.52015	-0.00027376	-1.0435	-0.00054922	526.3143696354925	107.32	0.50725	108.07	107.74	108.25	0.75436					31	9	4	0	0	0	0.012968	1	40503	40503		92.491	7.2194	1	43416000	+		25679	25696	18522	18658	25145	25145					0.09145618787465537
KLFDAPLSI	9	Unmodified	_KLFDAPLSI_					0	0	0		nc|ENSG00000185596|C4AMC7|WASH3P;ENST00000557932.5_1_15:102513813-102516466:+|nuORF;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1;ENST00000400706.3_1_12:88275-90926:+|nuORF;nc|ENSG00000292372|Q9NQA3|WASH6P;nc|ENSG00000234769|A8MWX3|WASH4P;ENSG00000182484|ENST00000359512|WASH6P;ENST00000461007.6_1_X:155252382-155252984:+|nuORF;ENST00000482170.6_1_X:155252010-155252984:+|nuORF	nc|ENSG00000185596|C4AMC7|WASH3P	nc|ENSG00000185596|C4AMC7|WASH3P	MULTI-SECPEP	A375_MHC_IP_R2	2	502.66351318359375	2	502.294768	1002.57498	-0.59897	-0.00030086	-0.013604	-6.8332E-06	-0.61258	-0.0003077	502.29461717067346	103.45	1.1678	104.21	103.89	105.06	0.76428					41	22	4	0	0	0	0.061442	1	39146	39146		72.968	7.7329	1	7722500			25680	14812	18523	18659	25146	25146					0.07379815108413368
KLFDDKLQNC	10	Unmodified	_KLFDDKLQNC_					0	0	0		nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9;nc|ENSG00000117859|Q96SU4-3|OSBPL9;ENST00000524620.1_1_1:52211285-52225200:+|nuORF;ENST00000484890.5_1_1:52211210-52222042:+|nuORF;ENST00000473207.6_1_1:52195646-52226369:+|nuORF	nc|ENSG00000117859|Q96SU4-7|OSBPL9	nc|ENSG00000117859|Q96SU4-7|OSBPL9	MULTI-MSMS	A375_MHC_IP_R1	1	408.94110107421875	3	408.541146	1222.60161	-0.18097	-7.3934E-05	0.34538	0.0001411	0.16441	6.7168E-05	408.5413105141643	46.406	0.5041	46.406	46.195	46.699	0					13	9	2	0	0	0	0.5004	1	16319	16319		28.181	13.224	1	2229700			25681	3514	18524	18660	25147	25147					-0.0007886406253874156
KLFDDKLQNC	10	Unmodified	_KLFDDKLQNC_					0	0	0		nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9;nc|ENSG00000117859|Q96SU4-3|OSBPL9;ENST00000524620.1_1_1:52211285-52225200:+|nuORF;ENST00000484890.5_1_1:52211210-52222042:+|nuORF;ENST00000473207.6_1_1:52195646-52226369:+|nuORF	nc|ENSG00000117859|Q96SU4-7|OSBPL9	nc|ENSG00000117859|Q96SU4-7|OSBPL9	MULTI-SECPEP	A375_MHC_IP_R1	1	612.7073974609375	2	612.308081	1222.60161	-0.37328	-0.00022856	0.030503	1.8677E-05	-0.34278	-0.00020988	612.3080346845903	46.469	0.50322	46.469	46.144	46.647	0					15	9	2	0	0	0	0.61139	1	16282	16282		59.052	40.906	1	3903500			25682	3514	18524	18660	25148	25148					-0.0007886406253874156
KLFDDKLQNC	10	Unmodified	_KLFDDKLQNC_					0	0	0		nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9;nc|ENSG00000117859|Q96SU4-3|OSBPL9;ENST00000524620.1_1_1:52211285-52225200:+|nuORF;ENST00000484890.5_1_1:52211210-52222042:+|nuORF;ENST00000473207.6_1_1:52195646-52226369:+|nuORF	nc|ENSG00000117859|Q96SU4-7|OSBPL9	nc|ENSG00000117859|Q96SU4-7|OSBPL9	MULTI-SECPEP	A375_MHC_IP_R2	2	409.26800537109375	3	408.541146	1222.60161	0.0051376	2.0989E-06	0.17735	7.2455E-05	0.18249	7.4554E-05	408.5412525595647	45.529	0.50324	46.294	46.15	46.654	0.76519					17	9	2	0	0	0	0.79938	1	17071	17071		19.144	19.144	1	2204500			25683	3514	18524	18660	25149	25149					-0.0007886406253874156
KLFDDKLQNC	10	Unmodified	_KLFDDKLQNC_					0	0	0		nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9;nc|ENSG00000117859|Q96SU4-3|OSBPL9;ENST00000524620.1_1_1:52211285-52225200:+|nuORF;ENST00000484890.5_1_1:52211210-52222042:+|nuORF;ENST00000473207.6_1_1:52195646-52226369:+|nuORF	nc|ENSG00000117859|Q96SU4-7|OSBPL9	nc|ENSG00000117859|Q96SU4-7|OSBPL9	MULTI-SECPEP	A375_MHC_IP_R2	2	612.7084350585938	2	612.308081	1222.60161	-0.54829	-0.00033572	0.28991	0.00017751	-0.25838	-0.00015821	612.3081239631042	45.555	0.55483	46.321	46.099	46.654	0.76519					23	10	3	0	0	0	0.78231	1	17046	17046		42.312	27.907	1	3153300			25684	3514	18524	18660	25150	25150					-0.0007886406253874156
KLFDIFSQQV	10	Unmodified	_KLFDIFSQQV_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000568642.5_1_16:46706372-46712929:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-SECPEP	A375_MHC_IP_R2	2	613.5404663085938	2	612.834788	1223.65502	-0.32595	-0.00019976	-0.42212	-0.00025869	-0.74807	-0.00045844	612.8348000074919	113.65	0.35419	114.36	114.13	114.48	0.70985					9	6	2	0	0	0	0.91393	1	42783	42783		16.566	16.566	1	3437400			25685	1476	18525	18661	25151	25151					0.0521425671158795
KLFDIRPIW	9	Unmodified	_KLFDIRPIW_					0	0	0		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-SECPEP	A375_MHC_IP_R2	2	595.1312255859375	2	594.350409	1186.68626	-0.57076	-0.00033923	-0.50058	-0.00029752	-1.0713	-0.00063675	594.3502108714813	105.92	0.30704	106.68	106.48	106.78	0.75977					9	5	2	0	0	0	0.69381	1	40002	40002		10.8	3.5103	1	1156100			25686	5730	18526	18662	25152	25152					0.10038874536348885
KLFDIRPIW	9	Unmodified	_KLFDIRPIW_					0	0	0		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-MATCH	A375_MHC_IP_R1	1		2	594.350409	1186.68626	-0.17447	-0.0001037	-0.16157	-9.6032E-05	-0.33605	-0.00019973	594.3504447392054	106.72	0.4082	106.72	106.57	106.98	0	0.023413	0.00026352	NaN	10.8	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1047000			25687	5730	18526	18662							0.10038874536348885
KLFDNTVGA	9	Unmodified	_KLFDNTVGA_					0	0	0		ENSG00000168569|ENST00000307366|TMEM223	ENSG00000168569|ENST00000307366|TMEM223	ENSG00000168569|ENST00000307366|TMEM223	MULTI-SECPEP	A375_MHC_IP_R1	1	483.1584777832031	2	482.758549	963.502546	0.033168	1.6012E-05	0.023778	1.1479E-05	0.056947	2.7492E-05	482.7584575721795	49.471	0.8138	49.471	49.134	49.947	0					35	15	4	0	0	0	0.053904	1	17480	17480		85.272	23.915	1	11837000			25688	7322	18527	18663	25153	25153					0.019334810348595965
KLFDNTVGA	9	Unmodified	_KLFDNTVGA_					0	0	0		ENSG00000168569|ENST00000307366|TMEM223	ENSG00000168569|ENST00000307366|TMEM223	ENSG00000168569|ENST00000307366|TMEM223	MULTI-SECPEP	A375_MHC_IP_R2	2	483.158203125	2	482.758549	963.502546	-0.63716	-0.00030759	0.25796	0.00012453	-0.3792	-0.00018306	482.7584359575356	48.682	0.66087	49.44	49.08	49.741	0.75737					36	12	4	0	0	0	0.13064	1	18237	18237		56.177	12.319	1	8593000			25689	7322	18527	18663	25154	25154					0.019334810348595965
KLFDQANKL	9	Unmodified	_KLFDQANKL_					0	0	0		nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2	nc|ENSG00000119139|Q9UDY2-6|TJP2	nc|ENSG00000119139|Q9UDY2-6|TJP2	MULTI-SECPEP	A375_MHC_IP_R2	2	538.683349609375	2	538.808574	1075.60259	-0.93868	-0.00050577	0.13958	7.5208E-05	-0.7991	-0.00043056	538.8087194144122	41.638	0.35673	42.413	42.198	42.555	0.77451					10	6	2	0	0	0	0.14438	1	15444	15444		51.488	17.086	1	2369200			25690	14565	18528	18664	25155	25155					0.06781718368642942
KLFDRPQEL	9	Unmodified	_KLFDRPQEL_					0	0	0		nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000494124.2_1_9:19316810-19337609:+|nuORF;ENST00000380437.8_1_9:19290781-19335045:+|nuORF	nc|ENSG00000137145|Q5VZ89-5|DENND4C	nc|ENSG00000137145|Q5VZ89-5|DENND4C	MULTI-MSMS	A375_MHC_IP_R1	1	573.7191162109375	2	573.319306	1144.62406	0.27129	0.00015554	-0.60905	-0.00034918	-0.33776	-0.00019365	573.3189128684063	49.169	0.91153	49.169	48.882	49.793	0					38	17	4	0	0	0	0.010042	1	17348	17348		124.95	46.225	1	14266000			25691	4862	18529	18665	25156	25156					0.05753103397364612
KLFDRPQEL	9	Unmodified	_KLFDRPQEL_					0	0	0		nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000494124.2_1_9:19316810-19337609:+|nuORF;ENST00000380437.8_1_9:19290781-19335045:+|nuORF	nc|ENSG00000137145|Q5VZ89-5|DENND4C	nc|ENSG00000137145|Q5VZ89-5|DENND4C	MULTI-MSMS	A375_MHC_IP_R2	2	573.7189331054688	2	573.319306	1144.62406	-0.18016	-0.00010329	-0.25836	-0.00014812	-0.43851	-0.00025141	573.3190976576842	48.296	0.70443	49.054	48.678	49.383	0.75736					39	13	4	0	0	0	0.0098082	1	18088	18088		114.19	45.082	1	17481000			25692	4862	18529	18665	25157	25157					0.05753103397364612
KLFDRPQEL	9	Unmodified	_KLFDRPQEL_					0	0	0		nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000494124.2_1_9:19316810-19337609:+|nuORF;ENST00000380437.8_1_9:19290781-19335045:+|nuORF	nc|ENSG00000137145|Q5VZ89-5|DENND4C	nc|ENSG00000137145|Q5VZ89-5|DENND4C	MULTI-SECPEP	A375_MHC_IP_R2	2	382.9485778808594	3	382.548629	1144.62406	-0.040594	-1.5529E-05	0.1853	7.0887E-05	0.14471	5.5358E-05	382.54867417078975	48.298	0.96062	49.055	48.628	49.588	0.75737					56	18	4	0	0	0	0.14606	1	18075	18075		51.488	3.756	1	35034000			25693	4862	18529	18665	25158	25158					0.05753103397364612
KLFDRSVDL	9	Unmodified	_KLFDRSVDL_					0	0	0		ENSG00000267796|ENST00000301159|LIN37;ENST00000587108.5_1_19:36243860-36245221:+|nuORF;ENST00000590706.6_1_19:36239538-36244244:+|nuORF	ENSG00000267796|ENST00000301159|LIN37	ENSG00000267796|ENST00000301159|LIN37	MULTI-MSMS	A375_MHC_IP_R1	1	365.27325439453125	3	364.873113	1091.59751	0.20487	7.4753E-05	0.16332	5.9591E-05	0.36819	0.00013434	364.8731720288728	57.747	0.70971	57.747	57.518	58.228	0					35	13	4	0	0	0	0.32092	1	20730	20730		21.59	5.0243	1	16812000			25694	9966	18530	18666	25159	25159					0.05537414506034111
KLFDRSVDL	9	Unmodified	_KLFDRSVDL_					0	0	0		ENSG00000267796|ENST00000301159|LIN37;ENST00000587108.5_1_19:36243860-36245221:+|nuORF;ENST00000590706.6_1_19:36239538-36244244:+|nuORF	ENSG00000267796|ENST00000301159|LIN37	ENSG00000267796|ENST00000301159|LIN37	MULTI-SECPEP	A375_MHC_IP_R1	1	547.2056274414062	2	546.806031	1091.59751	-0.54595	-0.00029853	0.20748	0.00011345	-0.33847	-0.00018508	546.806111981392	57.765	0.75971	57.765	57.518	58.278	0					26	14	2	0	0	0	0.13199	1	20720	20720		69.338	31.163	1	18607000			25695	9966	18530	18666	25160	25160					0.05537414506034111
KLFDRSVDL	9	Unmodified	_KLFDRSVDL_					0	0	0		ENSG00000267796|ENST00000301159|LIN37;ENST00000587108.5_1_19:36243860-36245221:+|nuORF;ENST00000590706.6_1_19:36239538-36244244:+|nuORF	ENSG00000267796|ENST00000301159|LIN37	ENSG00000267796|ENST00000301159|LIN37	MULTI-MSMS	A375_MHC_IP_R2	2	365.27313232421875	3	364.873113	1091.59751	-0.43285	-0.00015794	0.18187	6.6361E-05	-0.25098	-9.1576E-05	364.87313679584776	56.785	0.61167	57.535	57.255	57.867	0.75015					21	11	2	0	0	0	0.050868	1	21452	21452		51.488	14.413	1	18208000			25696	9966	18530	18666	25161	25161					0.05537414506034111
KLFDRSVDL	9	Unmodified	_KLFDRSVDL_					0	0	0		ENSG00000267796|ENST00000301159|LIN37;ENST00000587108.5_1_19:36243860-36245221:+|nuORF;ENST00000590706.6_1_19:36239538-36244244:+|nuORF	ENSG00000267796|ENST00000301159|LIN37	ENSG00000267796|ENST00000301159|LIN37	MULTI-MSMS	A375_MHC_IP_R2	2	547.2057495117188	2	546.806031	1091.59751	-1.2303	-0.00067272	-0.44156	-0.00024145	-1.6718	-0.00091417	546.8061611935392	56.794	0.81548	57.545	57.255	58.071	0.75015					54	15	5	0	0	0	0.0085482	1	21456	21456		128.57	72.396	1	19955000			25697	9966	18530	18666	25162	25162					0.05537414506034111
KLFDTQHRV	9	Unmodified	_KLFDTQHRV_					0	0	0		ENST00000521443.1_1_8:125463141-125474348:+|nuORF;ENSG00000183665|ENST00000328599|TRMT12	ENST00000521443.1_1_8:125463141-125474348:+|nuORF	ENST00000521443.1_1_8:125463141-125474348:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	382.280517578125	3	381.88049	1142.61964	0.058225	2.2235E-05	0.64017	0.00024447	0.69839	0.0002667	381.8808213455738	25.942	0.70908	25.942	25.664	26.373	0					21	13	2	0	0	0	0.010042	3	7658	7658;7738;7753		124.95	82.997	1	14463000			25698	8516	18531	18667	25163;25164;25165	25163					0.05403638974439673
KLFECKECGKD	11	Unmodified	_KLFECKECGKD_					0	0	0		ZNF345|p.L62F|1|0.43|ENSG00000251247|chr19:36877014-36877014|C/T|missense_variant	ZNF345|p.L62F|1|0.43|ENSG00000251247|chr19:36877014-36877014|C/T|missense_variant	ZNF345|p.L62F|1|0.43|ENSG00000251247|chr19:36877014-36877014|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	650.7069702148438	2	650.307223	1298.59989	-0.97413	-0.00063348	-0.089256	-5.8044E-05	-1.0634	-0.00069153	650.3070010378215	49.915	0.56052	50.669	50.394	50.955	0.75406					22	10	3	0	0	0	0.72494	1	18759	18759		13.615	1.4401	1	2879100			25699	30214	18532	18668	25166	25166					-0.037462411428350606
KLFECKECGKD	11	Unmodified	_KLFECKECGKD_					0	0	0		ZNF345|p.L62F|1|0.43|ENSG00000251247|chr19:36877014-36877014|C/T|missense_variant	ZNF345|p.L62F|1|0.43|ENSG00000251247|chr19:36877014-36877014|C/T|missense_variant	ZNF345|p.L62F|1|0.43|ENSG00000251247|chr19:36877014-36877014|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	650.307223	1298.59989	-0.97413	-0.00063348	-0.089256	-5.8044E-05	-1.0634	-0.00069153	650.3070010378215	49.915	0.56052	50.669	50.394	50.955	0.75406	-0.016733	0.00064999	NaN	13.615	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2879100			25700	30214	18532	18668							-0.037462411428350606
KLFEDDEH	8	Unmodified	_KLFEDDEH_					0	0	0		nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2	MULTI-MSMS	A375_MHC_IP_R1	1	516.6841430664062	2	516.735271	1031.45599	-0.76793	-0.00039682	-0.016158	-8.3492E-06	-0.78409	-0.00040517	516.7351694374033	28.936	0.55776	28.936	28.745	29.302	0					22	10	3	0	0	0	0.77702	1	9124	9124		5.7604	0.46354	1	9606800			25701	14698	18533	18669	25167	25167					-0.05848003587107087
KLFEDELTL	9	Unmodified	_KLFEDELTL_					0	0	0		ENSG00000168924|ENST00000302787|LETM1;ENST00000597330.1_1_19:58556424-58557021:+|nuORF	ENSG00000168924|ENST00000302787|LETM1	ENSG00000168924|ENST00000302787|LETM1	MULTI-MSMS	A375_MHC_IP_R1	1	554.7001953125	2	554.300247	1106.58594	-0.45113	-0.00025006	1.8623	0.0010323	1.4112	0.00078223	554.3005088156532	97.035	0.35469	97.035	96.833	97.187	0					15	6	3	0	0	0	0.12771	1	35666	35666		45.7	0	1	1420800			25702	7361	18534	18670	25168	25168					0.036911726920379806
KLFEDELTL	9	Unmodified	_KLFEDELTL_					0	0	0		ENSG00000168924|ENST00000302787|LETM1;ENST00000597330.1_1_19:58556424-58557021:+|nuORF	ENSG00000168924|ENST00000302787|LETM1	ENSG00000168924|ENST00000302787|LETM1	MULTI-MATCH	A375_MHC_IP_R2	2		2	554.300247	1106.58594	-0.77111	-0.00042743	-0.034189	-1.8951E-05	-0.8053	-0.00044638	554.3002291661282	96.175	0.40608	96.926	96.703	97.109	0.75045	-0.054565	-0.00014733	NaN	45.7	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1368700			25703	7361	18534	18670							0.036911726920379806
KLFEDKELQW	10	Unmodified	_KLFEDKELQW_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	A375_MHC_IP_R1	1	446.6375732421875	3	445.902961	1334.68705	-0.059307	-2.6445E-05	-0.20948	-9.3407E-05	-0.26879	-0.00011985	445.90288748301026	74.527	1.0648	74.527	74.095	75.16	0					50	20	4	0	0	0	0.25644	1	27123	27123		43.477	23.49	1	13908000			25704	5800	18535	18671	25169	25169					0.03309624394751154
KLFEDKELQW	10	Unmodified	_KLFEDKELQW_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	A375_MHC_IP_R2	2	446.6369934082031	3	445.902961	1334.68705	-0.3389	-0.00015112	-0.026958	-1.202E-05	-0.36586	-0.00016314	445.9029529871247	73.711	1.0683	74.447	74.041	75.109	0.7354					47	20	4	0	0	0	0.55864	1	27952	27952		23.964	15.212	1	14868000			25705	5800	18535	18671	25170	25170					0.03309624394751154
KLFEDKELQW	10	Unmodified	_KLFEDKELQW_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	A375_MHC_IP_R2	2	667.7274780273438	2	668.350803	1334.68705	-0.75644	-0.00050557	0.049422	3.3031E-05	-0.70702	-0.00047254	668.3507358011195	73.709	0.51162	74.444	74.192	74.704	0.73541					25	9	3	0	0	0	0.86335	1	27959	27959		23.964	14.42	1	6841600			25706	5800	18535	18671	25171	25171					0.03309624394751154
KLFEDKELQW	10	Unmodified	_KLFEDKELQW_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MATCH	A375_MHC_IP_R1	1		2	668.350803	1334.68705	-0.58967	-0.00039411	0.085789	5.7337E-05	-0.50388	-0.00033677	668.8524161377529	74.579	0.61009	74.579	74.298	74.908	0	0.067137	2.4897E-05	NaN	29.281	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7107300			25707	5800	18535	18671							0.03309624394751154
KLFEEIREI	9	Unmodified	_KLFEEIREI_					0	0	0		ENSG00000166046|ENST00000299045|TCP11L2;nc|ENSG00000166046|Q8N4U5-2|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	MULTI-MSMS	A375_MHC_IP_R1	1	392.9451904296875	3	392.892284	1175.65502	0.013308	5.2286E-06	0.53554	0.00021041	0.54884	0.00021564	392.8924578169504	68.59	1.0157	68.59	68.26	69.275	0					56	19	5	0	0	0	0.6894	1	25039	25039		7.9454	0.90831	1	26952000			25708	7020	18536	18672	25172	25172					0.07422256711629416
KLFEEIREI	9	Unmodified	_KLFEEIREI_					0	0	0		ENSG00000166046|ENST00000299045|TCP11L2;nc|ENSG00000166046|Q8N4U5-2|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	MULTI-SECPEP	A375_MHC_IP_R1	1	589.2345581054688	2	588.834788	1175.65502	-0.38302	-0.00022554	0.4688	0.00027604	0.085773	5.0506E-05	588.8349854808333	68.59	0.96423	68.59	68.26	69.224	0					47	18	4	0	0	0	0.018709	1	24837	24837		132.13	48.706	1	30400000			25709	7020	18536	18672	25173	25173					0.07422256711629416
KLFEEIREI	9	Unmodified	_KLFEEIREI_					0	0	0		ENSG00000166046|ENST00000299045|TCP11L2;nc|ENSG00000166046|Q8N4U5-2|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	MULTI-MSMS	A375_MHC_IP_R2	2	589.6986694335938	2	588.834788	1175.65502	-0.51992	-0.00030615	0.28001	0.00016488	-0.23991	-0.00014127	588.8349197277233	67.699	1.0678	68.435	68.155	69.223	0.73631					48	20	4	0	0	0	0.22706	1	25685	25685		37.771	22.523	1	25561000			25710	7020	18536	18672	25174	25174					0.07422256711629416
KLFEEIREI	9	Unmodified	_KLFEEIREI_					0	0	0		ENSG00000166046|ENST00000299045|TCP11L2;nc|ENSG00000166046|Q8N4U5-2|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	MULTI-MSMS	A375_MHC_IP_R2	2	392.9451599121094	3	392.892284	1175.65502	-0.1404	-5.5163E-05	0.25128	9.8726E-05	0.11088	4.3562E-05	392.8923513219799	67.697	1.2212	68.433	68.052	69.273	0.73631					57	23	4	0	0	0	0.23949	1	25760	25760		35.08	5.6425	1	29103000			25711	7020	18536	18672	25175	25175					0.07422256711629416
KLFEEIREILL	11	Unmodified	_KLFEEIREILL_					0	0	0		ENSG00000166046|ENST00000299045|TCP11L2;nc|ENSG00000166046|Q8N4U5-2|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	MULTI-MSMS	A375_MHC_IP_R2	2	702.3192138671875	2	701.918852	1401.82315	-0.72683	-0.00051017	0.17973	0.00012616	-0.54709	-0.00038402	701.9190107107036	122.01	0.20133	122.46	122.33	122.53	0.44488					5	3	2	0	0	0	0.00072695	1	46743	46743		107.51	57.987	1	14718000			25712	7020	18537	18673	25176	25176					0.13831318905431544
KLFEFMHET	9	Unmodified	_KLFEFMHET_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	A375_MHC_IP_R1	1	394.9269104003906	3	394.526837	1180.55868	-0.12161	-4.7979E-05	-0.091468	-3.6086E-05	-0.21308	-8.4066E-05	394.861177962513	65.608	0.66274	65.608	65.309	65.972	0					19	12	3	0	0	0	0.54799	1	23764	23764		17.443	9.9656	1	2210600			25713	1768	18538	18674	25177	25177					-0.02437634119996801
KLFEFMHET	9	Unmodified	_KLFEFMHET_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	A375_MHC_IP_R2	2	394.9267883300781	3	394.526837	1180.55868	-0.11112	-4.384E-05	-0.0029506	-1.1641E-06	-0.11407	-4.5004E-05	394.5268512691511	64.602	0.61152	65.343	65.054	65.666	0.74022					21	11	3	0	0	0	0.44183	1	24485	24485		22.658	13.682	1	2732200			25714	1768	18538	18674	25178	25178					-0.02437634119996801
KLFEFMHET	9	Oxidation (M)	_KLFEFM(Oxidation (M))HET_		KLFEFM(1)HET		KLFEFM(72)HET	0	0	1		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	A375_MHC_IP_R2	2	599.68408203125	2	599.284074	1196.5536	-0.47258	-0.00028321	1.1461	0.00068684	0.67352	0.00040363	599.2844140137818	46.015	0.25243	46.78	46.654	46.906	0.76519					8	4	2	0	0	0	0.076731	1	17254	17254		71.708	33.532	1	3970300			25715	1768	18538	18675	25179	25179		58			-0.03681937982605632
KLFEIGLA	8	Unmodified	_KLFEIGLA_					0	0	0			REV__ENST00000469841.5_1_3:57131519-57204269:-|nuORF	REV__ENST00000469841.5_1_3:57131519-57204269:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	445.2876892089844	2	445.770929	889.527304	-0.3425	-0.00015268	2.0014	0.00089214	1.6588	0.00073947	445.77101818968885	73.711	0.40945	74.446	74.192	74.602	0.7354					9	7	2	0	0	0	0.972	1	27984	27984		3.5965	2.9061	1	486870	+		25716	19442	18539	18676	25180	25180					0.07812160908213173
KLFEKKYSV	9	Unmodified	_KLFEKKYSV_					0	0	0		nc|ENSG00000115750|Q53T94-3|TAF1B;ENSG00000115750|ENST00000263663|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	MULTI-SECPEP	A375_MHC_IP_R1	1	381.6253967285156	3	381.225375	1140.6543	0.25341	9.6605E-05	-0.116	-4.4222E-05	0.13741	5.2383E-05	381.2252918198352	28.274	0.45354	28.274	28.088	28.541	0					16	8	3	0	0	0	0.68927	1	8705	8705		22.775	6.2091	1	5378500			25717	3334	18540	18677	25181	25181					0.08959462062557577
KLFEKKYSV	9	Unmodified	_KLFEKKYSV_					0	0	0		nc|ENSG00000115750|Q53T94-3|TAF1B;ENSG00000115750|ENST00000263663|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	MULTI-SECPEP	A375_MHC_IP_R2	2	381.62518310546875	3	381.225375	1140.6543	0.048914	1.8647E-05	-0.19047	-7.2611E-05	-0.14155	-5.3963E-05	381.2253525165878	27.44	0.30552	28.119	27.945	28.251	0.67857					14	5	3	0	0	0	0.65498	1	9385	9385		20.871	20.871	1	9819400			25718	3334	18540	18677	25182	25182					0.08959462062557577
KLFEKSTGL	9	Unmodified	_KLFEKSTGL_					0	0	0		ENST00000462285.5_1_1:63919583-63920635:-|nuORF;ENST00000461681.5_1_1:63906715-63922830:-|nuORF;nc|ENSG00000142856|Q13352-2|ITGB3BP;ENSG00000142856|ENST00000271002|ITGB3BP;ENST00000460394.5_1_1:63917661-63988804:-|nuORF;nc|ENSG00000142856|Q13352-5|ITGB3BP	ENST00000462285.5_1_1:63919583-63920635:-|nuORF	ENST00000462285.5_1_1:63919583-63920635:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	512.1970825195312	2	511.797675	1021.5808	-0.55599	-0.00028455	-0.16657	-8.5248E-05	-0.72256	-0.0003698	511.79745003326383	36.241	0.40558	36.241	36.033	36.439	0					15	7	3	0	0	0	0.40377	1	12140	12140		28.495	10.348	1	3338400			25719	5333	18541	18678	25183	25183					0.07086913620082669
KLFEKSTGL	9	Unmodified	_KLFEKSTGL_					0	0	0		ENST00000462285.5_1_1:63919583-63920635:-|nuORF;ENST00000461681.5_1_1:63906715-63922830:-|nuORF;nc|ENSG00000142856|Q13352-2|ITGB3BP;ENSG00000142856|ENST00000271002|ITGB3BP;ENST00000460394.5_1_1:63917661-63988804:-|nuORF;nc|ENSG00000142856|Q13352-5|ITGB3BP	ENST00000462285.5_1_1:63919583-63920635:-|nuORF	ENST00000462285.5_1_1:63919583-63920635:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1976928710938	2	511.797675	1021.5808	-0.98775	-0.00050553	0.36852	0.00018861	-0.61923	-0.00031692	511.797822546159	35.231	0.45473	35.994	35.778	36.233	0.76338					15	8	3	0	0	0	0.47674	1	12780	12780		23.79	0	1	2777300			25720	5333	18541	18678	25184	25184					0.07086913620082669
KLFEKVKEV	9	Unmodified	_KLFEKVKEV_					0	0	0		ENSG00000064763|ENST00000536681|FAR2	ENSG00000064763|ENST00000536681|FAR2	ENSG00000064763|ENST00000536681|FAR2	MULTI-MSMS	A375_MHC_IP_R1	1	374.29718017578125	3	373.897258	1118.66995	-0.071753	-2.6828E-05	0.15503	5.7965E-05	0.083276	3.1137E-05	373.8972820011488	29.581	1.4511	29.581	29.252	30.703	0					70	28	4	0	0	0	0.0064781	3	9243	9203;9243;9512		121.93	59.036	1	131230000			25721	1359	18542	18679	25185;25186;25187	25186					0.11535748579603933
KLFEKVKEV	9	Unmodified	_KLFEKVKEV_					0	0	0		ENSG00000064763|ENST00000536681|FAR2	ENSG00000064763|ENST00000536681|FAR2	ENSG00000064763|ENST00000536681|FAR2	MULTI-MSMS	A375_MHC_IP_R1	1	560.7418823242188	2	560.342249	1118.66995	-0.89653	-0.00050236	0.13059	7.3178E-05	-0.76594	-0.00042919	560.3422911777786	29.593	0.59595	29.593	29.403	29.999	0					17	11	2	0	0	0	0.0026724	1	9275	9275		139.38	66.41	1	15795000			25722	1359	18542	18679	25188	25188					0.11535748579603933
KLFEKVKEV	9	Unmodified	_KLFEKVKEV_					0	0	0		ENSG00000064763|ENST00000536681|FAR2	ENSG00000064763|ENST00000536681|FAR2	ENSG00000064763|ENST00000536681|FAR2	MULTI-MSMS	A375_MHC_IP_R2	2	374.29718017578125	3	373.897258	1118.66995	-0.26007	-9.724E-05	-0.13189	-4.9312E-05	-0.39196	-0.00014655	373.89720046038303	28.565	1.5075	29.264	29.08	30.588	0.69872					67	29	4	0	0	0	0.0096967	2	9883	9883;10062		102.55	46.71	1	133500000			25723	1359	18542	18679	25189;25190	25189					0.11535748579603933
KLFEKVKEV	9	Unmodified	_KLFEKVKEV_					0	0	0		ENSG00000064763|ENST00000536681|FAR2	ENSG00000064763|ENST00000536681|FAR2	ENSG00000064763|ENST00000536681|FAR2	MULTI-MSMS	A375_MHC_IP_R2	2	560.74169921875	2	560.342249	1118.66995	-1.2682	-0.00071062	-0.046967	-2.6317E-05	-1.3152	-0.00073694	560.3422207338891	28.61	0.49826	29.308	29.183	29.681	0.69872					17	9	2	0	0	0	0.0085451	1	9917	9917		128.58	64.618	1	20846000			25724	1359	18542	18679	25191	25191					0.11535748579603933
KLFELIQPLP	10	Unmodified	_KLFELIQPLP_					0	0	0		KLK6|p.S119F|1|0.14|ENSG00000167755|chr19:50963391-50963391|G/A|missense_variant	KLK6|p.S119F|1|0.14|ENSG00000167755|chr19:50963391-50963391|G/A|missense_variant	KLK6|p.S119F|1|0.14|ENSG00000167755|chr19:50963391-50963391|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	399.9302673339844	3	399.912908	1196.7169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.48	1	47.245	46.745	47.745	0.76519								0	0	0	0.15475	1	17408	17408		5.4027	0.35519	1				25725	14229	18543	18680	25192	25192					0.12640608130755027
KLFGKRLNV	9	Unmodified	_KLFGKRLNV_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	A375_MHC_IP_R1	1	359.29754638671875	3	358.897593	1073.67095	0.033768	1.2119E-05	-0.25435	-9.1284E-05	-0.22058	-7.9165E-05	358.8974447235838	34.479	0.65641	34.479	34.154	34.81	0					26	12	3	0	0	0	0.073067	2	11357	11357;11429		55.503	18.997	1	9584300			25726	5445	18544	18681	25193;25194	25193					0.13706007739165216
KLFGKRLNV	9	Unmodified	_KLFGKRLNV_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	A375_MHC_IP_R2	2	359.2972717285156	3	358.897593	1073.67095	-0.49005	-0.00017588	0.0092274	3.3117E-06	-0.48082	-0.00017256	358.897570501803	33.304	0.56034	34.056	33.737	34.298	0.75225					23	10	3	0	0	0	0.024574	1	11904	11904		79.596	30.042	1	12000000			25727	5445	18544	18681	25195	25195					0.13706007739165216
KLFGMIITI	9	Oxidation (M)	_KLFGM(Oxidation (M))IITI_		KLFGM(1)IITI		KLFGM(130)IITI	0	0	1		ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	A375_MHC_IP_R1	1	526.7150268554688	2	526.314646	1050.61474	-0.22278	-0.00011725	-0.091129	-4.7963E-05	-0.31391	-0.00016522	526.3146427289639	108.38	0.96283	108.38	108	108.97	0					43	18	4	0	0	0	0.0086611	1	39709	39709		128.37	24.617	1	41858000			25728	1290;12706	18545	18682	25196	25196		33			0.09145618787465537
KLFGMIITI	9	Oxidation (M)	_KLFGM(Oxidation (M))IITI_		KLFGM(1)IITI		KLFGM(82)IITI	0	0	1		ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	A375_MHC_IP_R1	1	526.7144165039062	2	526.314646	1050.61474	-0.30691	-0.00016153	-0.47317	-0.00024904	-0.78008	-0.00041057	526.314375386293	111.52	2.3956	111.52	109.99	112.38	0					106	46	3	0	0	0	0.021889	1	41074	41074		81.89	7.4674	1	18367000			25729	1290;12706	18545	18682	25197	25197		33			0.09145618787465537
KLFGMIITI	9	Oxidation (M)	_KLFGM(Oxidation (M))IITI_		KLFGM(1)IITI		KLFGM(72)IITI	0	0	1		ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	A375_MHC_IP_R2	2	526.7146606445312	2	526.314646	1050.61474	-0.298	-0.00015684	-0.39826	-0.00020961	-0.69626	-0.00036645	526.3143616818007	110.78	2.1904	111.52	109.87	112.06	0.73692					92	42	4	0	0	0	0.033557	1	41931	41931		71.922	7.686	1	9856500			25730	1290;12706	18545	18682	25198	25198		33			0.09145618787465537
KLFGMIITI	9	Oxidation (M)	_KLFGM(Oxidation (M))IITI_		KLFGM(1)IITI		KLFGM(92)IITI	0	0	1		ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	A375_MHC_IP_R2	2	526.7145385742188	2	526.314646	1050.61474	-0.26281	-0.00013832	-0.4801	-0.00025269	-0.74292	-0.00039101	526.3143863928791	111.31	3.3108	112.05	111.6	114.91	0.73691					101	64	3	0	0	0	0.012968	1	42135	42135		92.491	18.069	1	11404000			25731	1290;12706	18545	18682	25199	25199		33			0.09145618787465537
KLFGMIITI	9	Oxidation (M)	_KLFGM(Oxidation (M))IITI_					0	0	1		ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	526.314646	1050.61474	-0.52336	-0.00027545	-0.52015	-0.00027376	-1.0435	-0.00054922	526.3143696354925	107.32	0.50725	108.07	107.74	108.25	0.75436	-0.15723	-0.00020392	NaN	128.37	31	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43416000			25732	1290;12706	18545	18682				33			0.09145618787465537
KLFGMIITI	9	Unmodified	_KLFGMIITI_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	A375_MHC_IP_R1	1	518.716064453125	2	518.317189	1034.61982	-0.3094	-0.00016037	1.426	0.00073914	1.1166	0.00057878	518.3178548912963	126.13	0.65543	126.13	125.95	126.61	0					29	12	5	0	0	0	0.0097266	1	48144	48144		111.29	14.212	1	153200000			25733	1290;12706	18545	18683	25200	25200					0.10389922650097105
KLFGMIITI	9	Unmodified	_KLFGMIITI_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	A375_MHC_IP_R2	2	518.716552734375	2	518.317189	1034.61982	-0.66735	-0.0003459	-1.0507	-0.00054459	-1.718	-0.00089049	518.3166351935494	125.65	0.96023	125.95	125.77	126.73	0.2951					31	18	3	0	0	0	0.021889	1	49081	49081		81.89	7.4674	1	104280000			25734	1290;12706	18545	18683	25201	25201					0.10389922650097105
KLFGMIITI	9	Unmodified	_KLFGMIITI_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	A375_MHC_IP_R2	2	1036.29736328125	1	1035.6271	1034.61982	0.08689	8.9985E-05	-1.0713	-0.0011095	-0.98445	-0.0010195	1035.626048393851	125.65	0.5057	125.95	125.82	126.33	0.2951					11	9	2	0	0	0	0.037683	1	49091	49091		69.105	29.148	1	28844000			25735	1290;12706	18545	18683	25202	25202					0.10389922650097105
KLFHEVVQA	9	Unmodified	_KLFHEVVQA_					0	0	0		ENSG00000188976|ENST00000327044|NOC2L;ENST00000487214.1_1_1:889839-894659:-|nuORF	ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	MULTI-SECPEP	A375_MHC_IP_R1	1	357.9378662109375	3	357.537953	1069.59203	0.12044	4.306E-05	-0.59915	-0.00021422	-0.47871	-0.00017116	357.53781345719835	39.314	1.2195	39.314	39.085	40.304	0					30	23	2	0	0	0	0.63749	1	13405	13405		26.021	6.6588	1	16263000			25736	8948	18546	18684	25203	25203					0.06001735714221468
KLFHEVVQA	9	Unmodified	_KLFHEVVQA_					0	0	0		ENSG00000188976|ENST00000327044|NOC2L;ENST00000487214.1_1_1:889839-894659:-|nuORF	ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	MULTI-SECPEP	A375_MHC_IP_R1	1	536.2029418945312	2	535.803291	1069.59203	-0.61327	-0.00032859	-0.0003871	-2.0741E-07	-0.61366	-0.0003288	535.8032662809576	39.286	0.50794	39.286	39.033	39.541	0					21	9	3	0	0	0	0.046527	1	13415	13415		117.76	35.231	1	8937300			25737	8948	18546	18684	25204	25204					0.06001735714221468
KLFHEVVQA	9	Unmodified	_KLFHEVVQA_					0	0	0		ENSG00000188976|ENST00000327044|NOC2L;ENST00000487214.1_1_1:889839-894659:-|nuORF	ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	MULTI-SECPEP	A375_MHC_IP_R2	2	357.9535827636719	3	357.537953	1069.59203	-0.55956	-0.00020006	-0.16874	-6.0331E-05	-0.7283	-0.0002604	357.537903682454	38.327	0.81635	39.101	38.791	39.607	0.77451					30	15	3	0	0	0	0.61758	1	14047	14047		21.59	2.2282	1	15002000			25738	8948	18546	18684	25205	25205					0.06001735714221468
KLFHEVVQA	9	Unmodified	_KLFHEVVQA_					0	0	0		ENSG00000188976|ENST00000327044|NOC2L;ENST00000487214.1_1_1:889839-894659:-|nuORF	ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	MULTI-SECPEP	A375_MHC_IP_R2	2	536.202880859375	2	535.803291	1069.59203	-1.1979	-0.00064186	0.20081	0.0001076	-0.99713	-0.00053427	535.8033996687614	38.304	0.4072	39.079	38.843	39.25	0.77451					20	7	3	0	0	0	0.13093	1	14070	14070		86.332	26.258	1	8943500			25739	8948	18546	18684	25206	25206					0.06001735714221468
KLFHGEIWPA	10	Unmodified	_KLFHGEIWPA_					0	0	0		ENST00000447578.6_1_12:110930933-110930975:-|nuORF	ENST00000447578.6_1_12:110930933-110930975:-|nuORF	ENST00000447578.6_1_12:110930933-110930975:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	400.2852783203125	3	399.885353	1196.63423	-0.19603	-7.8388E-05	0.4093	0.00016367	0.21328	8.5286E-05	399.885473277202	70.614	0.87005	70.614	70.289	71.159	0					51	16	4	0	0	0	0.47871	1	25612	25612		37.771	22.033	1	20464000			25740	12046	18547	18685	25207	25207					0.0437771112262908
KLFHGEIWPA	10	Unmodified	_KLFHGEIWPA_					0	0	0		ENST00000447578.6_1_12:110930933-110930975:-|nuORF	ENST00000447578.6_1_12:110930933-110930975:-|nuORF	ENST00000447578.6_1_12:110930933-110930975:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	599.7235107421875	2	599.324391	1196.63423	-0.33145	-0.00019865	0.036532	2.1895E-05	-0.29492	-0.00017675	599.3243531586652	70.581	0.66476	70.581	70.341	71.005	0					34	12	4	0	0	0	0.88038	1	25630	25630		31.268	23.659	1	5491400			25741	12046	18547	18685	25208	25208					0.0437771112262908
KLFHGEIWPA	10	Unmodified	_KLFHGEIWPA_					0	0	0		ENST00000447578.6_1_12:110930933-110930975:-|nuORF	ENST00000447578.6_1_12:110930933-110930975:-|nuORF	ENST00000447578.6_1_12:110930933-110930975:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	400.2849426269531	3	399.885353	1196.63423	0.033771	1.3505E-05	-0.017152	-6.8589E-06	0.016619	6.6458E-06	399.885315181756	69.705	0.91605	70.439	70.132	71.048	0.73421					53	17	4	0	0	0	0.47871	1	26364	26364		44.392	32.874	1	18312000			25742	12046	18547	18685	25209	25209					0.0437771112262908
KLFHGEIWPA	10	Unmodified	_KLFHGEIWPA_					0	0	0		ENST00000447578.6_1_12:110930933-110930975:-|nuORF	ENST00000447578.6_1_12:110930933-110930975:-|nuORF	ENST00000447578.6_1_12:110930933-110930975:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	599.7245483398438	2	599.324391	1196.63423	-0.44444	-0.00026636	-0.0010515	-6.3022E-07	-0.44549	-0.00026699	599.3243462718189	69.728	0.66075	70.462	70.132	70.793	0.73421					28	12	3	0	0	0	0.84881	1	26384	26384		34.932	21.89	1	6413100			25743	12046	18547	18685	25210	25210					0.0437771112262908
KLFLLKKKKKK	11	Unmodified	_KLFLLKKKKKK_					0	0	0		ENST00000336440.3_1_14:69259862-69260099:-|nuORF	ENST00000336440.3_1_14:69259862-69260099:-|nuORF	ENST00000336440.3_1_14:69259862-69260099:-|nuORF	MSMS	A375_MHC_IP_R1	1	467.9906311035156	3	468.005914	1400.99591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.541	1	19.541	19.041	20.041	0								0	0	0	0.16358	1	4878	4878		0.08335	0	1				25744	10816	18548	18686	25211	25211					0.31145354823297566
KLFLPKPRV	9	Unmodified	_KLFLPKPRV_					0	0	0			REV__MDM2|p.L40F|1|0.34|ENSG00000135679|chr12:68813572-68813572|C/T|missense_variant	REV__MDM2|p.L40F|1|0.34|ENSG00000135679|chr12:68813572-68813572|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	366.64508056640625	3	366.577972	1096.71209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.808	1	37.808	37.308	38.308	0								0	0	0	0.15135	1	12772	12772		19.362	4.1135	1		+		25745	27000	18549	18687	25212	25212					0.16759768778638318
KLFLPKPRV	9	Unmodified	_KLFLPKPRV_					0	0	0			REV__MDM2|p.L40F|1|0.34|ENSG00000135679|chr12:68813572-68813572|C/T|missense_variant	REV__MDM2|p.L40F|1|0.34|ENSG00000135679|chr12:68813572-68813572|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	366.5975646972656	3	366.577972	1096.71209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.28	1	55.28	54.78	55.78	0								0	0	0	0.15486	1	19765	19765		4.1895	1.1943	1		+		25746	27000	18549	18687	25213	25213					0.16759768778638318
KLFNDAIRL	9	Unmodified	_KLFNDAIRL_					0	0	0		ENST00000486403.1_1_2:114398907-114399703:+|nuORF;ENST00000494909.5_1_2:114398907-114399703:+|nuORF;ENST00000465063.5_1_22:51207206-51208050:-|nuORF;ENST00000450954.5_1_2:114386257-114399703:+|nuORF;ENST00000436958.5_1_22:51207206-51220648:-|nuORF;nc|ENSG00000144134|Q9UNT1|RABL2B;nc|ENSG00000144134|Q9UBK7|RABL2A;ENSG00000144134|ENST00000683472|RABL2A;ENSG00000079974|ENST00000691320|RABL2B;nc|ENSG00000144134|Q9UNT1-3|RABL2B;nc|ENSG00000144134|Q9UBK7-3|RABL2A	ENST00000486403.1_1_2:114398907-114399703:+|nuORF	ENST00000486403.1_1_2:114398907-114399703:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	364.2853088378906	3	363.885353	1088.63423	0.51612	0.00018781	-0.62056	-0.00022581	-0.10443	-3.8002E-05	363.8851275370073	70.008	0.45363	70.008	69.732	70.185	0					18	8	3	0	0	0	0.67539	1	25421	25421		15.739	13.456	1	3312100			25747	1705	18550	18688	25214	25214					0.09345711122591638
KLFNDAIRL	9	Unmodified	_KLFNDAIRL_					0	0	0		ENST00000486403.1_1_2:114398907-114399703:+|nuORF;ENST00000494909.5_1_2:114398907-114399703:+|nuORF;ENST00000465063.5_1_22:51207206-51208050:-|nuORF;ENST00000450954.5_1_2:114386257-114399703:+|nuORF;ENST00000436958.5_1_22:51207206-51220648:-|nuORF;nc|ENSG00000144134|Q9UNT1|RABL2B;nc|ENSG00000144134|Q9UBK7|RABL2A;ENSG00000144134|ENST00000683472|RABL2A;ENSG00000079974|ENST00000691320|RABL2B;nc|ENSG00000144134|Q9UNT1-3|RABL2B;nc|ENSG00000144134|Q9UBK7-3|RABL2A	ENST00000486403.1_1_2:114398907-114399703:+|nuORF	ENST00000486403.1_1_2:114398907-114399703:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	364.28521728515625	3	363.885353	1088.63423	0.054188	1.9718E-05	-0.75478	-0.00027465	-0.70059	-0.00025494	363.8850234144478	69.054	0.55757	69.789	69.525	70.082	0.73511					21	10	3	0	0	0	0.20645	1	26176	26176		37.075	19.632	1	2595000			25748	1705	18550	18688	25215	25215					0.09345711122591638
KLFNDAIRL	9	Unmodified	_KLFNDAIRL_					0	0	0		ENST00000486403.1_1_2:114398907-114399703:+|nuORF;ENST00000494909.5_1_2:114398907-114399703:+|nuORF;ENST00000465063.5_1_22:51207206-51208050:-|nuORF;ENST00000450954.5_1_2:114386257-114399703:+|nuORF;ENST00000436958.5_1_22:51207206-51220648:-|nuORF;nc|ENSG00000144134|Q9UNT1|RABL2B;nc|ENSG00000144134|Q9UBK7|RABL2A;ENSG00000144134|ENST00000683472|RABL2A;ENSG00000079974|ENST00000691320|RABL2B;nc|ENSG00000144134|Q9UNT1-3|RABL2B;nc|ENSG00000144134|Q9UBK7-3|RABL2A	ENST00000486403.1_1_2:114398907-114399703:+|nuORF	ENST00000486403.1_1_2:114398907-114399703:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	545.6876220703125	2	545.324391	1088.63423	-0.70064	-0.00038208	-1.0911	-0.00059501	-1.7918	-0.00097709	545.3236019135257	69.018	0.30592	69.753	69.626	69.932	0.73511					10	5	2	0	0	0	0.53098	1	26133	26133		27.223	20.5	1	4066200			25749	1705	18550	18688	25216	25216					0.09345711122591638
KLFNEFIQL	9	Unmodified	_KLFNEFIQL_					0	0	0		ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-SECPEP	A375_MHC_IP_R1	1	576.7268676757812	2	576.326599	1150.63865	0.29646	0.00017086	0.65459	0.00037726	0.95105	0.00054811	576.32692270296	114.59	1.2165	114.59	114.26	115.48	0					56	23	5	0	0	0	0.062502	1	41971	41971		81.89	12.785	1	52241000			25750	1371	18551	18689	25217	25217					0.06935175545504535
KLFNEFIQL	9	Unmodified	_KLFNEFIQL_					0	0	0		ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-MSMS	A375_MHC_IP_R2	2	576.726806640625	2	576.326599	1150.63865	0.044766	2.58E-05	-0.32659	-0.00018822	-0.28182	-0.00016242	576.3263160483598	113.65	0.85809	114.36	113.97	114.83	0.70985					43	16	4	0	0	0	0.0070829	1	42775	42775		131.27	24.081	1	72113000			25751	1371	18551	18689	25218	25218					0.06935175545504535
KLFNGTFLKA	10	Unmodified	_KLFNGTFLKA_					0	0	0		ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000411858.1_1_7:6854458-6863725:-|nuORF	ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-SECPEP	A375_MHC_IP_R1	1	569.7023315429688	2	569.834591	1137.65463	-0.46307	-0.00026387	1.0091	0.00057503	0.54604	0.00031115	569.8348573956774	65.958	0.30411	65.958	65.768	66.072	0					12	5	3	0	0	0	0.13368	1	23890	23890		73.196	24.85	1	1673700			25752	3797	18552	18690	25219	25219					0.09130881782402867
KLFNGTFLKA	10	Unmodified	_KLFNGTFLKA_					0	0	0		ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000411858.1_1_7:6854458-6863725:-|nuORF	ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-SECPEP	A375_MHC_IP_R2	2	570.2344360351562	2	569.834591	1137.65463	-0.31923	-0.00018191	-0.54281	-0.00030931	-0.86204	-0.00049122	569.8343451296478	64.798	0.4073	65.537	65.308	65.715	0.73811					12	7	2	0	0	0	0.86849	1	24583	24583		21.59	6.7519	1	1999400			25753	3797	18552	18690	25220	25220					0.09130881782402867
KLFNKILKA	9	Unmodified	_KLFNKILKA_					0	0	0		nc|ENSG00000114982|Q9P2N6-7|KANSL3;nc|ENSG00000114982|Q9P2N6-8|KANSL3;nc|ENSG00000114982|Q9P2N6-6|KANSL3;ENST00000447759.5_3_2:97261350-97293793:-|nuORF;nc|ENSG00000114982|Q9P2N6-2|KANSL3;nc|ENSG00000114982|Q9P2N6-5|KANSL3;nc|ENSG00000114982|Q9P2N6-4|KANSL3;ENSG00000114982|ENST00000431828|KANSL3;nc|ENSG00000114982|Q9P2N6|KANSL3	nc|ENSG00000114982|Q9P2N6-7|KANSL3	nc|ENSG00000114982|Q9P2N6-7|KANSL3	MULTI-MSMS	A375_MHC_IP_R1	1	359.30584716796875	3	358.905977	1073.6961	0.19363	6.9494E-05	-0.29142	-0.00010459	-0.097797	-3.51E-05	358.9058081930055	40.465	0.50895	40.465	40.203	40.712	0					17	9	2	0	0	0	0.030891	1	13927	13927		74.2	42.162	1	3003900			25754	3263	18553	18691	25221	25221					0.16220062541742664
KLFNKILKA	9	Unmodified	_KLFNKILKA_					0	0	0		nc|ENSG00000114982|Q9P2N6-7|KANSL3;nc|ENSG00000114982|Q9P2N6-8|KANSL3;nc|ENSG00000114982|Q9P2N6-6|KANSL3;ENST00000447759.5_3_2:97261350-97293793:-|nuORF;nc|ENSG00000114982|Q9P2N6-2|KANSL3;nc|ENSG00000114982|Q9P2N6-5|KANSL3;nc|ENSG00000114982|Q9P2N6-4|KANSL3;ENSG00000114982|ENST00000431828|KANSL3;nc|ENSG00000114982|Q9P2N6|KANSL3	nc|ENSG00000114982|Q9P2N6-7|KANSL3	nc|ENSG00000114982|Q9P2N6-7|KANSL3	MULTI-MSMS	A375_MHC_IP_R2	2	359.26934814453125	3	358.905977	1073.6961	-0.32629	-0.00011711	-0.44934	-0.00016127	-0.77563	-0.00027838	358.90582799764127	39.239	0.45743	40.013	39.812	40.269	0.77451					15	8	2	0	0	0	0.062639	2	14463	14463;14510		59.368	36.71	1	2400900			25755	3263	18553	18691	25222;25223	25222					0.16220062541742664
KLFPDAIRL	9	Unmodified	_KLFPDAIRL_					0	0	0		ENSG00000103429|ENST00000261658|BFAR	ENSG00000103429|ENST00000261658|BFAR	ENSG00000103429|ENST00000261658|BFAR	MULTI-SECPEP	A375_MHC_IP_R1	1	537.22900390625	2	536.829309	1071.64407	-0.73395	-0.000394	0.24322	0.00013057	-0.49073	-0.00026344	536.8294207750439	83.558	0.61099	83.558	83.125	83.736	0					18	11	2	0	0	0	0.34544	1	30522	30522		53.404	9.6316	1	5487000			25756	2451	18554	18692	25224	25224					0.11110899127970697
KLFPDAIRL	9	Unmodified	_KLFPDAIRL_					0	0	0		ENSG00000103429|ENST00000261658|BFAR	ENSG00000103429|ENST00000261658|BFAR	ENSG00000103429|ENST00000261658|BFAR	MULTI-SECPEP	A375_MHC_IP_R2	2	537.2290649414062	2	536.829309	1071.64407	-0.9014	-0.0004839	0.048868	2.6234E-05	-0.85253	-0.00045766	536.8292791775109	82.444	0.50684	83.186	82.94	83.447	0.74293					19	9	3	0	0	0	0.38134	1	31297	31297		41.956	7.5538	1	4775900			25757	2451	18554	18692	25225	25225					0.11110899127970697
KLFPDFLFPA	10	Unmodified	_KLFPDFLFPA_					0	0	0		MAPK10|p.S316F|2|0.12|ENSG00000109339|chr4:86067811-86067811|G/A|missense_variant	MAPK10|p.S316F|2|0.12|ENSG00000109339|chr4:86067811-86067811|G/A|missense_variant	MAPK10|p.S316F|2|0.12|ENSG00000109339|chr4:86067811-86067811|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	598.2109985351562	2	597.831517	1193.64848	-0.81042	-0.00048449	-0.62832	-0.00037563	-1.4387	-0.00086012	597.831475235631	68.052	0.35427	68.052	67.804	68.159	0					12	6	3	0	0	0	0.91442	1	24624	24624		11.495	2.9014	1	879160			25758	14351	18555	18693	25226	25226					0.059403635508715524
KLFPDTPLAL	10	Unmodified	_KLFPDTPLAL_					0	0	0		nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3	nc|ENSG00000129351|Q12906-2|ILF3	nc|ENSG00000129351|Q12906-2|ILF3	MULTI-SECPEP	A375_MHC_IP_R1	1	558.2286987304688	2	557.828975	1113.6434	-0.091109	-5.0823E-05	0.064858	3.618E-05	-0.02625	-1.4643E-05	557.8289001315235	115	0.96317	115	114.62	115.58	0					34	18	3	0	0	0	0.15653	1	42156	42156		103.42	103.42	1	6379900			25759	14595	18556	18694	25227	25227					0.09112059688254703
KLFPDTPLAL	10	Unmodified	_KLFPDTPLAL_					0	0	0		nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3	nc|ENSG00000129351|Q12906-2|ILF3	nc|ENSG00000129351|Q12906-2|ILF3	MULTI-MSMS	A375_MHC_IP_R2	2	558.2288208007812	2	557.828975	1113.6434	-0.53057	-0.00029597	-0.09468	-5.2815E-05	-0.62525	-0.00034878	557.8287660160338	113.98	0.65058	114.69	114.38	115.03	0.70985					26	12	3	0	0	0	0.0062475	1	42977	42977		103.42	47.242	1	6421700			25760	14595	18556	18694	25228	25228					0.09112059688254703
KLFPGSPAI	9	Unmodified	_KLFPGSPAI_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000196862|ENST00000408999|RGPD4	MULTI-SECPEP	A375_MHC_IP_R1	1	465.6763000488281	2	465.276378	928.538203	-0.23659	-0.00011008	0.077237	3.5936E-05	-0.15936	-7.4146E-05	465.27639546468276	73.476	0.45497	73.476	73.285	73.74	0					15	8	2	0	0	0	0.14422	1	26775	26775		52.268	18.166	1	1687500			25761	8657;9090;6015	18557	18695	25229	25229					0.07107563282522733
KLFPGSPAI	9	Unmodified	_KLFPGSPAI_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000196862|ENST00000408999|RGPD4	MULTI-SECPEP	A375_MHC_IP_R2	2	465.6761169433594	2	465.276378	928.538203	-0.76045	-0.00035382	0.21085	9.8102E-05	-0.54961	-0.00025572	465.27644310314474	72.568	0.4571	73.303	73.022	73.48	0.73541					15	8	2	0	0	0	0.11436	1	27555	27555		58.679	24.576	1	2032800			25762	8657;9090;6015	18557	18695	25230	25230					0.07107563282522733
KLFQGQLVL	9	Unmodified	_KLFQGQLVL_					0	0	0		ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-SECPEP	A375_MHC_IP_R1	1	523.7237548828125	2	523.32386	1044.63317	-0.41819	-0.00021885	0.1969	0.00010304	-0.22129	-0.00011581	523.3240066431628	91.987	0.60655	91.987	91.655	92.261	0					22	11	3	0	0	0	0.28475	1	33797	33797		39.957	0	1	3324300			25763	6559	18558	18696	25231	25231					0.1126349675369056
KLFQGQLVL	9	Unmodified	_KLFQGQLVL_					0	0	0		ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-SECPEP	A375_MHC_IP_R2	2	523.7235107421875	2	523.32386	1044.63317	-0.45307	-0.0002371	0.057263	2.9967E-05	-0.39581	-0.00020714	523.3238490115	90.976	0.5075	91.711	91.463	91.97	0.7345					17	9	2	0	0	0	0.24479	1	34631	34631		42.095	0	1	3181900			25764	6559	18558	18696	25232	25232					0.1126349675369056
KLFSILSTV	9	Unmodified	_KLFSILSTV_					0	0	0		nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5;ENST00000491496.1_1_7:803580-810256:+|nuORF;nc|ENSG00000164818|Q86Y56-3|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	MULTI-MSMS	A375_MHC_IP_R2	2	504.709716796875	2	504.310418	1006.60628	-0.75613	-0.00038133	0.096166	4.8497E-05	-0.65997	-0.00033283	504.3103999183694	107.14	0.81151	107.9	107.49	108.3	0.75436					41	15	4	0	0	0	0.02114	1	40442	40442		82.529	0.63912	1	8517800			25765	6883	18559	18697	25233	25233					0.10324388142521457
KLFTQIFGV	9	Unmodified	_KLFTQIFGV_					0	0	0		ENSG00000122678|ENST00000242248|POLM;nc|ENSG00000122678|Q9NP87-2|POLM	ENSG00000122678|ENST00000242248|POLM	ENSG00000122678|ENST00000242248|POLM	MULTI-SECPEP	A375_MHC_IP_R1	1	527.2105712890625	2	526.810585	1051.60662	-0.17422	-9.1782E-05	0.91351	0.00048125	0.73929	0.00038946	526.8111079393905	112.51	0.40826	112.51	112.23	112.64	0					18	7	3	0	0	0	0.012104	1	41237	41237		103.75	22.135	1	8854800			25766	3798	18560	18698	25234	25234					0.08287807862370755
KLFTQIFGV	9	Unmodified	_KLFTQIFGV_					0	0	0		ENSG00000122678|ENST00000242248|POLM;nc|ENSG00000122678|Q9NP87-2|POLM	ENSG00000122678|ENST00000242248|POLM	ENSG00000122678|ENST00000242248|POLM	MULTI-MSMS	A375_MHC_IP_R2	2	527.2113037109375	2	526.810585	1051.60662	-0.27418	-0.00014444	1.081	0.0005695	0.80685	0.00042506	526.8112470178287	111.41	0.72041	112.14	111.7	112.42	0.73691					25	13	3	0	0	0	0.012447	1	42023	42023		115.69	22.87	1	9119700			25767	3798	18560	18698	25235	25235					0.08287807862370755
KLFVINEV	8	Unmodified	_KLFVINEV_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1;ENST00000510834.1_1_5:34915843-34920030:+|nuORF;ENST00000515798.5_1_5:34915843-34922393:+|nuORF;ENST00000510960.5_1_5:34915843-34922894:+|nuORF	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	MULTI-MSMS	A375_MHC_IP_R2	2	481.6892395019531	2	481.289485	960.564418	-0.56799	-0.00027337	0.67463	0.00032469	0.10663	5.1321E-05	481.2897974113557	80.219	0.91312	80.964	80.607	81.52	0.74473					38	17	3	0	0	0	0.62444	1	30506	30506		43.858	13.222	1	5704200			25768	3154	18561	18699	25236	25236					0.08255832453983203
KLFVYKQR	8	Unmodified	_KLFVYKQR_					0	0	0		ENST00000417037.6_2_3:38183656-38183971:+|nuORF	ENST00000417037.6_2_3:38183656-38183971:+|nuORF	ENST00000417037.6_2_3:38183656-38183971:+|nuORF	MSMS	A375_MHC_IP_R2	2	361.2569580078125	3	361.222076	1080.6444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.47	1	24.1	23.6	24.6	0.63014								0	0	0	0.16876	1	7557	7557		9.3831	1.2276	1				25769	11697	18562	18700	25237	25237					0.1073031884784541
KLGDFGLATV	10	Unmodified	_KLGDFGLATV_					0	0	0		nc|ENSG00000170390|Q8N568-2|DCLK2;ENSG00000170390|ENST00000296550|DCLK2;nc|ENSG00000170390|Q8N568-3|DCLK2	nc|ENSG00000170390|Q8N568-2|DCLK2	nc|ENSG00000170390|Q8N568-2|DCLK2	MULTI-SECPEP	A375_MHC_IP_R1	1	511.1893310546875	2	510.78985	1019.56515	-0.65646	-0.00033531	0.12258	6.2612E-05	-0.53388	-0.0002727	510.7897987224751	85.293	0.66117	85.293	85.056	85.717	0					35	12	4	0	0	0	0.22519	1	31240	31240		51.415	0	1	7771100			25770	7502	18563	18701	25238	25238					0.05614627103057046
KLGDFGLATV	10	Unmodified	_KLGDFGLATV_					0	0	0		nc|ENSG00000170390|Q8N568-2|DCLK2;ENSG00000170390|ENST00000296550|DCLK2;nc|ENSG00000170390|Q8N568-3|DCLK2	nc|ENSG00000170390|Q8N568-2|DCLK2	nc|ENSG00000170390|Q8N568-2|DCLK2	MULTI-MSMS	A375_MHC_IP_R2	2	511.18927001953125	2	510.78985	1019.56515	-0.65277	-0.00033343	-0.17214	-8.7926E-05	-0.8249	-0.00042135	510.7898253559531	84.405	0.65891	85.141	84.813	85.472	0.73601					30	12	3	0	0	0	0.11994	1	32065	32065		59.368	0	1	6732500			25771	7502	18563	18701	25239	25239					0.05614627103057046
KLGDIMGV	8	Unmodified	_KLGDIMGV_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;ENST00000566329.1_1_16:72134993-72137705:+|nuORF	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-SECPEP	A375_MHC_IP_R1	1	417.1335144042969	2	416.733489	831.452425	0.30721	0.00012803	0.15044	6.2691E-05	0.45765	0.00019072	416.7335044797017	70.825	0.86997	70.825	70.494	71.364	0					34	16	3	0	0	0	0.24561	1	25670	25670		71.134	0	1	17908000			25772	5186	18564	18702	25240	25240					0.029956551053601288
KLGDLFFRV	9	Unmodified	_KLGDLFFRV_					0	0	0		ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-4|USP54;nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF	ENSG00000166348|ENST00000687698|USP54	ENSG00000166348|ENST00000687698|USP54	MULTI-SECPEP	A375_MHC_IP_R1	1	548.2213745117188	2	547.821484	1093.62842	-0.45657	-0.00025012	-0.1221	-6.6888E-05	-0.57866	-0.000317	547.8214570233636	96.755	0.60814	96.755	96.478	97.086	0					28	11	3	0	0	0	0.24655	1	35539	35539		63.227	30.922	1	5303400			25773	7064	18565	18703	25241	25241					0.08534612610947079
KLGDLFFRV	9	Unmodified	_KLGDLFFRV_					0	0	0		ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-4|USP54;nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF	ENSG00000166348|ENST00000687698|USP54	ENSG00000166348|ENST00000687698|USP54	MULTI-MSMS	A375_MHC_IP_R2	2	365.9499816894531	3	365.550082	1093.62842	0.1716	6.2729E-05	0.17729	6.4809E-05	0.34889	0.00012754	365.550145408595	95.711	0.45751	96.461	96.195	96.653	0.75045					20	8	3	0	0	0	0.75494	1	36365	36365		2.086	0.17963	1	2299100			25774	7064	18565	18703	25242	25242					0.08534612610947079
KLGDLFFRV	9	Unmodified	_KLGDLFFRV_					0	0	0		ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-4|USP54;nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF	ENSG00000166348|ENST00000687698|USP54	ENSG00000166348|ENST00000687698|USP54	MULTI-SECPEP	A375_MHC_IP_R2	2	548.2210693359375	2	547.821484	1093.62842	-0.66391	-0.0003637	0.21407	0.00011727	-0.44984	-0.00024643	547.8215018591131	95.673	1.0185	96.423	95.888	96.906	0.75045					33	19	3	0	0	0	0.30942	1	36326	36326		42.312	42.312	1	5419600			25775	7064	18565	18703	25243	25243					0.08534612610947079
KLGDLFFRV	9	Unmodified	_KLGDLFFRV_					0	0	0		ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-4|USP54;nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF	ENSG00000166348|ENST00000687698|USP54	ENSG00000166348|ENST00000687698|USP54	MULTI-MATCH	A375_MHC_IP_R1	1		3	365.550082	1093.62842	0.30946	0.00011312	0.53368	0.00019509	0.84314	0.00030821	365.5502277414662	96.801	0.45586	96.801	96.529	96.985	0	0.17007	0.00014825	NaN	2.086	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1202900			25776	7064	18565	18703							0.08534612610947079
KLGDQRYKSKT	11	Unmodified	_KLGDQRYKSKT_					0	0	0		ENST00000456504.5_1_15:94858078-95022260:+|nuORF;nc|ENSG00000140563|Q6DN12-2|MCTP2;ENSG00000140563|ENST00000357742|MCTP2	ENST00000456504.5_1_15:94858078-95022260:+|nuORF	ENST00000456504.5_1_15:94858078-95022260:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	662.7715454101562	2	662.372601	1322.73065	-0.81591	-0.00054043	-0.64047	-0.00042423	-1.4564	-0.00096466	662.3720949004893	132.54	1.121	132.73	132.25	133.37	0.18953					55	21	3	0	0	0	0.73698	1	52288	52288		2.4985	2.4985	1	14254000			25777	5170	18566	18704	25244	25244					0.08219233891873046
KLGEIVTTI	9	Unmodified	_KLGEIVTTI_					0	0	0		ENSG00000004059|ENST00000000233|ARF5;ENST00000483848.5_1_3:57563094-57582900:-|nuORF;ENST00000493378.1_1_3:57569737-57582900:-|nuORF;ENST00000463733.5_1_7:127228552-127229672:+|nuORF;ENST00000397387.2_1_13:101408869-101409262:-|nuORF;ENST00000470670.5_1_1:228270461-228285316:+|nuORF;ENST00000605447.1_1_9:136944076-136944538:+|nuORF;ENSG00000168374|ENST00000303436|ARF4;nc|ENSG00000134287|P61204-2|ARF3;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3	ENSG00000004059|ENST00000000233|ARF5;nc|ENSG00000134287|P61204-2|ARF3	nc|ENSG00000134287|P61204-2|ARF3	MULTI-SECPEP	A375_MHC_IP_R1	1	487.6997375488281	2	487.30005	972.585547	-0.19857	-9.6764E-05	0.11164	5.44E-05	-0.086935	-4.2363E-05	487.3000931025278	70.772	1.9314	70.772	70.289	72.22	0					104	37	5	0	0	0	0.025235	1	25610	25610		96.111	7.1571	1	224950000			25778	863;4562	18567	18705	25245	25245					0.09815797762848888
KLGEIVTTI	9	Unmodified	_KLGEIVTTI_					0	0	0		ENSG00000004059|ENST00000000233|ARF5;ENST00000483848.5_1_3:57563094-57582900:-|nuORF;ENST00000493378.1_1_3:57569737-57582900:-|nuORF;ENST00000463733.5_1_7:127228552-127229672:+|nuORF;ENST00000397387.2_1_13:101408869-101409262:-|nuORF;ENST00000470670.5_1_1:228270461-228285316:+|nuORF;ENST00000605447.1_1_9:136944076-136944538:+|nuORF;ENSG00000168374|ENST00000303436|ARF4;nc|ENSG00000134287|P61204-2|ARF3;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3	ENSG00000004059|ENST00000000233|ARF5;nc|ENSG00000134287|P61204-2|ARF3	nc|ENSG00000134287|P61204-2|ARF3	MULTI-MSMS	A375_MHC_IP_R2	2	487.6992492675781	2	487.30005	972.585547	-0.51053	-0.00024878	0.14396	7.0154E-05	-0.36657	-0.00017863	487.3001160000768	69.728	1.4215	70.462	70.081	71.503	0.73421					98	27	5	0	0	0	0.0092471	3	26348	26348;26567;26795		103.35	3.9816	1	327010000			25779	863;4562	18567	18705	25246;25247;25248	25246					0.09815797762848888
KLGENVANI	9	Unmodified	_KLGENVANI_					0	0	0		nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENSG00000100225|ENST00000266087|FBXO7	nc|ENSG00000100225|Q9Y3I1-3|FBXO7	nc|ENSG00000100225|Q9Y3I1-3|FBXO7	MULTI-SECPEP	A375_MHC_IP_R1	1	479.6714172363281	2	479.271824	956.529095	-0.29948	-0.00014353	-0.20226	-9.694E-05	-0.50175	-0.00024047	479.27166391791724	42.467	0.55645	42.467	42.233	42.79	0					21	10	3	0	0	0	0.056023	1	14728	14728		66.457	0	1	4962600			25780	2138	18568	18706	25249	25249					0.04909169926179402
KLGGVVSI	8	Unmodified	_KLGGVVSI_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.T2707Mfs*5|1|0.21|ENSG00000196367|chr7:98976664-98976688|CGCTGATGTTGGAGCACCAGGCTTT/-|frameshift_variant;TRRAP|p.I1891Sfs*37|1|0.32|ENSG00000196367|chr7:98953393-98953393|T/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	A375_MHC_IP_R1	1	387.1502380371094	2	386.749996	771.485439	0.29203	0.00011294	0.1987	7.6847E-05	0.49073	0.00018979	386.74997266546103	55.746	0.55935	55.746	55.482	56.041	0					22	10	3	0	0	0	0.69122	1	19939	19939		25.399	0	1	3741800			25781	9031	18569	18707	25250	25250					0.0905560521971438
KLGKKPKP	8	Unmodified	_KLGKKPKP_					0	0	0			REV__ENSG00000184675|ENST00000374869|AMER1	REV__ENSG00000184675|ENST00000374869|AMER1	MULTI-MSMS	A375_MHC_IP_R2	2	448.2856750488281	2	448.308013	894.601472	-0.663	-0.00029723	0.17032	7.6355E-05	-0.49268	-0.00022087	448.30794347807114	58.614	0.35498	59.363	59.187	59.542	0.74894					8	6	2	0	0	0	0.77643	1	22134	22134		7.9102	0	1	1052900	+		25782	21831	18570	18708	25251	25251					0.1499554879040943
KLGKKPKP	8	Unmodified	_KLGKKPKP_					0	0	0			REV__ENSG00000184675|ENST00000374869|AMER1	REV__ENSG00000184675|ENST00000374869|AMER1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	448.308013	894.601472	-0.663	-0.00029723	0.17032	7.6355E-05	-0.49268	-0.00022087	448.30794347807114	58.614	0.35498	59.363	59.187	59.542	0.74894	-0.18163	0.00010641	NaN	7.9102	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1052900	+		25783	21831	18570	18708							0.1499554879040943
KLGLKPLEV	9	Unmodified	_KLGLKPLEV_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	A375_MHC_IP_R1	1	499.2257080078125	2	498.826235	995.637917	-0.30524	-0.00015226	0.093315	4.6548E-05	-0.21192	-0.00010571	498.82623168251666	55.939	0.61017	55.939	55.584	56.194	0					27	11	3	0	0	0	0.0092511	1	19974	19974		103.42	34.315	1	8248500			25784	7961	18571	18709	25252	25252					0.13992380896468148
KLGLKPLEV	9	Unmodified	_KLGLKPLEV_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	A375_MHC_IP_R2	2	499.7275085449219	2	498.826235	995.637917	-0.70118	-0.00034977	0.085706	4.2753E-05	-0.61547	-0.00030701	498.82620071035467	54.822	0.66318	55.573	55.269	55.933	0.75075					27	12	3	0	0	0	0.16945	1	20676	20676		40.239	13.971	1	9432300			25785	7961	18571	18709	25253	25253					0.13992380896468148
KLGLLFFPY	9	Unmodified	_KLGLLFFPY_					0	0	0		ENST00000589644.1_1_19:38799650-38799980:-|nuORF;ENST00000585563.5_1_19:38798235-38806107:-|nuORF;nc|ENSG00000167645|Q5BJH7-2|YIF1B;nc|ENSG00000167645|Q5BJH7-4|YIF1B;nc|ENSG00000167645|Q5BJH7-5|YIF1B;nc|ENSG00000167645|Q5BJH7-6|YIF1B;nc|ENSG00000167645|Q5BJH7-3|YIF1B;ENSG00000167645|ENST00000339413|YIF1B	ENST00000589644.1_1_19:38799650-38799980:-|nuORF	ENST00000589644.1_1_19:38799650-38799980:-|nuORF	MSMS	A375_MHC_IP_R2	2	366.57342529296875	3	366.551311	1096.6321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.35	1	23.98	23.48	24.48	0.63014								0	0	0	0.15486	1	7495	7495		5.7319	0	1				25786	7203	18572	18710	25254	25254					0.08765282384797501
KLGLVQKV	8	Unmodified	_KLGLVQKV_					0	0	0		nc|ENSG00000140455|Q9Y6I4-2|USP3;ENSG00000140455|ENST00000380324|USP3	nc|ENSG00000140455|Q9Y6I4-2|USP3	nc|ENSG00000140455|Q9Y6I4-2|USP3	MULTI-SECPEP	A375_MHC_IP_R1	1	443.1997375488281	2	442.80002	883.585488	-0.23699	-0.00010494	0.015119	6.6946E-06	-0.22187	-9.8244E-05	442.7999767511277	32.964	0.55669	32.964	32.734	33.291	0					28	10	4	0	0	0	0.043585	1	10686	10686		120.45	20.079	1	23387000			25787	5154	18573	18711	25255	25255					0.13903842553509094
KLGLVQKV	8	Unmodified	_KLGLVQKV_					0	0	0		nc|ENSG00000140455|Q9Y6I4-2|USP3;ENSG00000140455|ENST00000380324|USP3	nc|ENSG00000140455|Q9Y6I4-2|USP3	nc|ENSG00000140455|Q9Y6I4-2|USP3	MULTI-SECPEP	A375_MHC_IP_R2	2	443.1999816894531	2	442.80002	883.585488	-0.36516	-0.00016169	0.27729	0.00012279	-0.087869	-3.8908E-05	442.8001155651693	32.043	0.60753	32.78	32.504	33.112	0.73692					23	11	3	0	0	0	0.0081525	1	11351	11351		133.7	21.109	1	19508000			25788	5154	18573	18711	25256	25256					0.13903842553509094
KLGNTKEKVAF	11	Unmodified	_KLGNTKEKVAF_					0	0	0		FBXO46|p.P94L|1|0.29|ENSG00000177051|chr19:45713215-45713215|G/A|missense_variant	FBXO46|p.P94L|1|0.29|ENSG00000177051|chr19:45713215-45713215|G/A|missense_variant	FBXO46|p.P94L|1|0.29|ENSG00000177051|chr19:45713215-45713215|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	412.2763671875	3	412.243317	1233.70812	0.16192	6.6749E-05	0.13155	5.4233E-05	0.29347	0.00012098	412.24322815083696	64.029	0.45518	64.029	63.837	64.292	0					10	8	2	0	0	0	0.73195	1	23115	23115		5.0475	0	1	939870			25789	13986	18574	18712	25257	25257					0.10061634494286409
KLGPAGTTI	9	Unmodified	_KLGPAGTTI_					0	0	0		ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1;nc|ENSG00000107938|Q3B7T1-3|EDRF1;nc|ENSG00000107938|Q3B7T1-4|EDRF1	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	429.65814208984375	2	429.258185	856.501818	-0.85302	-0.00036617	0.74965	0.00032179	-0.10337	-4.4374E-05	429.25842977534415	37.105	0.55656	37.876	37.615	38.171	0.7709					21	10	3	0	0	0	0.31606	1	13549	13549		47.749	19.262	1	6325900			25790	2771	18575	18713	25258	25258					0.06782686385793113
KLGPALKL	8	Unmodified	_KLGPALKL_					0	0	0		nc|ENSG00000102098|Q9UQR0-2|SCML2;ENSG00000102098|ENST00000251900|SCML2;nc|ENSG00000010803|Q96GD3-6|SCMH1;nc|ENSG00000010803|Q96GD3-5|SCMH1;nc|ENSG00000010803|Q96GD3-4|SCMH1;nc|ENSG00000010803|Q96GD3-3|SCMH1;nc|ENSG00000010803|Q96GD3-2|SCMH1;nc|ENSG00000010803|Q96GD3|SCMH1;ENSG00000010803|ENST00000695335|SCMH1;nc|ENSG00000146285|Q8N228-2|SCML4;ENSG00000146285|ENST00000369020|SCML4	nc|ENSG00000102098|Q9UQR0-2|SCML2;nc|ENSG00000146285|Q8N228-2|SCML4	nc|ENSG00000102098|Q9UQR0-2|SCML2	MULTI-MSMS	A375_MHC_IP_R1	1	420.689208984375	2	420.289288	838.564024	0.15276	6.4204E-05	-0.259	-0.00010885	-0.10624	-4.465E-05	420.28911970079463	44.087	0.51102	44.087	43.859	44.37	0					13	9	2	0	0	0	0.68328	1	15396	15396		39.957	0	1	2822800			25791	2357;5614	18576	18714	25259	25259					0.1382845752477806
KLGPAPKTL	9	Unmodified	_KLGPAPKTL_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-SECPEP	A375_MHC_IP_R1	1	463.1974182128906	2	462.797478	923.580402	-0.53	-0.00024528	0.046183	2.1373E-05	-0.48382	-0.00022391	462.7974290046314	26.043	0.65769	26.043	25.816	26.474	0					32	12	4	0	0	0	0.011143	1	7682	7682		125.04	53.904	1	31920000			25792	1519	18577	18715	25260	25260					0.11555538690890899
KLGPAPKTL	9	Unmodified	_KLGPAPKTL_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-SECPEP	A375_MHC_IP_R2	2	463.19708251953125	2	462.797478	923.580402	-0.97279	-0.00045021	0.20456	9.4669E-05	-0.76823	-0.00035554	462.7975116702864	25.307	0.7136	25.95	25.719	26.433	0.64368					30	13	3	0	0	0	0.010931	1	8424	8424		125.04	41.609	1	25090000			25793	1519	18577	18715	25261	25261					0.11555538690890899
KLGPEGELL	9	Unmodified	_KLGPEGELL_					0	0	0		ENSG00000105281|ENST00000542575|SLC1A5;nc|ENSG00000105281|Q15758-3|SLC1A5;nc|ENSG00000105281|Q15758-2|SLC1A5	ENSG00000105281|ENST00000542575|SLC1A5	ENSG00000105281|ENST00000542575|SLC1A5	MULTI-MSMS	A375_MHC_IP_R2	2	478.67596435546875	2	478.276575	954.538597	-0.86045	-0.00041153	0.019478	9.3157E-06	-0.84098	-0.00040222	478.276536108664	60.276	1.1675	61.021	60.651	61.819	0.74503					58	22	4	0	0	0	0.082375	1	22997	22997		53.833	7.8118	1	69304000			25794	2584	18578	18716	25262	25262					0.0595093821170849
KLGPEGELL	9	Unmodified	_KLGPEGELL_					0	0	0		ENSG00000105281|ENST00000542575|SLC1A5;nc|ENSG00000105281|Q15758-3|SLC1A5;nc|ENSG00000105281|Q15758-2|SLC1A5	ENSG00000105281|ENST00000542575|SLC1A5	ENSG00000105281|ENST00000542575|SLC1A5	MULTI-MATCH	A375_MHC_IP_R1	1		2	478.276575	954.538597	-0.50824	-0.00024308	0.005267	2.5191E-06	-0.50297	-0.00024056	478.2765263716211	61.221	1.3267	61.221	60.871	62.198	0	0.10024	-4.3858E-06	NaN	53.833	57	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58582000			25795	2584	18578	18716							0.0595093821170849
KLGPLGPVGPD	11	Unmodified	_KLGPLGPVGPD_					0	0	0			REV__ENSG00000197565|ENST00000334504|COL4A6	REV__ENSG00000197565|ENST00000334504|COL4A6	MULTI-MSMS	A375_MHC_IP_R1	1	525.7041015625	2	525.303124	1048.5917	-0.24856	-0.00013057	0.19869	0.00010437	-0.049865	-2.6194E-05	525.3032860812117	71.825	0.40259	71.825	71.615	72.018	0					12	7	2	0	0	0	0.54446	1	26151	26151		27.629	2.2295	1	2851800	+		25796	22300	18579	18717	25263	25263					0.06934315994385543
KLGPLPRVL	9	Unmodified	_KLGPLPRVL_					0	0	0		nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	MULTI-SECPEP	A375_MHC_IP_R1	1	497.23394775390625	2	496.834394	991.654236	-0.34462	-0.00017122	-0.50737	-0.00025208	-0.85199	-0.0004233	496.83407275213676	61.912	0.6128	61.912	61.636	62.249	0					28	11	3	0	0	0	0.38578	1	22331	22331		34.402	17.459	1	5783900			25797	1607	18580	18718	25264	25264					0.15807506853229825
KLGPLPRVL	9	Unmodified	_KLGPLPRVL_					0	0	0		nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	MULTI-SECPEP	A375_MHC_IP_R2	2	497.2340087890625	2	496.834394	991.654236	-0.77986	-0.00038746	-0.024621	-1.2232E-05	-0.80448	-0.0003997	496.8342607391355	60.758	0.50581	61.503	61.263	61.769	0.74503					23	9	3	0	0	0	0.35487	1	23010	23010		43.858	18.459	1	5351200			25798	1607	18580	18718	25265	25265					0.15807506853229825
KLGSVPVTV	9	Unmodified	_KLGSVPVTV_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	899.8212890625	1	899.556044	898.548768	-0.10608	-9.5429E-05	0.034789	3.1295E-05	-0.071295	-6.4134E-05	899.5559622295506	54.62	0.71152	54.62	54.314	55.025	0					27	13	3	0	0	0	0.020087	1	19456	19456		83.429	23.355	1	17740000			25799	9268	18581	18719	25266	25266					0.09543545936946884
KLGSVPVTV	9	Unmodified	_KLGSVPVTV_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	450.6811218261719	2	450.28166	898.548768	-0.74796	-0.00033679	0.021223	9.5565E-06	-0.72674	-0.00032724	450.28165353432337	53.728	3.8202	54.479	53.436	57.256	0.75105					154	74	5	0	0	0	0.0099737	1	20328	20328		96.367	28.286	1	387050000			25800	9268	18581	18719	25267	25267					0.09543545936946884
KLGSVPVTV	9	Unmodified	_KLGSVPVTV_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	899.3195190429688	1	899.556044	898.548768	-0.89994	-0.00080954	0.048093	4.3263E-05	-0.85184	-0.00076628	899.5559739445682	53.693	0.56555	54.445	54.198	54.764	0.75105					26	10	3	0	0	0	0.048303	1	20320	20320		93.166	36.989	1	21260000			25801	9268	18581	18719	25268	25268					0.09543545936946884
KLHDAFFKW	9	Unmodified	_KLHDAFFKW_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-SECPEP	A375_MHC_IP_R1	1	398.2817687988281	3	397.881831	1190.62366	-0.085301	-3.394E-05	0.23793	9.4666E-05	0.15263	6.0727E-05	397.88183411220876	62.152	0.82057	62.152	61.788	62.609	0					30	15	3	0	0	0	0.062502	1	22410	22410		60.899	53.422	1	5774800			25802	1871	18582	18720	25269	25269					0.03597728468184869
KLHDAFFKW	9	Unmodified	_KLHDAFFKW_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-SECPEP	A375_MHC_IP_R2	2	398.2817687988281	3	397.881831	1190.62366	-0.39427	-0.00015687	-0.0919	-3.6565E-05	-0.48617	-0.00019344	397.881748578256	60.959	0.85773	61.704	61.464	62.322	0.74503					34	16	3	0	0	0	0.36673	1	23099	23099		42.835	26.686	1	6801800			25803	1871	18582	18720	25270	25270					0.03597728468184869
KLHDERVLV	9	Unmodified	_KLHDERVLV_					0	0	0		ENSG00000196655|ENST00000533632|TRAPPC4;nc|ENSG00000196655|Q9Y296-2|TRAPPC4;ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENST00000531290.5_1_11:118889505-118889751:+|nuORF	ENSG00000196655|ENST00000533632|TRAPPC4	ENSG00000196655|ENST00000533632|TRAPPC4	MULTI-MSMS	A375_MHC_IP_R1	1	370.6204528808594	3	370.220624	1107.64004	-0.012924	-4.7846E-06	2.6448	0.00097916	2.6319	0.00097438	370.22051157543353	26.278	0.60879	26.278	26.017	26.626	0					35	11	4	0	0	0	0.64945	1	7803	7803		11.518	1.3673	1	18174000			25804	9070	18583	18721	25271	25271					0.09052809634272307
KLHEEEKLKR	10	Unmodified	_KLHEEEKLKR_					0	0	0		SON-ITSN1|1|fusion;SON-ITSN1|2|fusion;ENSG00000205726|ENST00000381318|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-4|ITSN1;nc|ENSG00000205726|Q15811-13|ITSN1;nc|ENSG00000205726|Q15811-2|ITSN1;nc|ENSG00000205726|Q15811-7|ITSN1;nc|ENSG00000205726|Q15811-10|ITSN1;nc|ENSG00000205726|Q15811-3|ITSN1;nc|ENSG00000205726|Q15811-11|ITSN1;nc|ENSG00000205726|Q15811-12|ITSN1;nc|ENSG00000205726|Q15811-6|ITSN1;nc|ENSG00000205726|Q15811-5|ITSN1	SON-ITSN1|1|fusion;nc|ENSG00000205726|Q15811-5|ITSN1	SON-ITSN1|1|fusion	MULTI-MSMS	A375_MHC_IP_R1	1	655.7823486328125	2	655.382968	1308.75138	-0.76153	-0.0004991	-0.43666	-0.00028618	-1.1982	-0.00078528	655.3825290526963	137.65	2.8535	137.65	137.23	140.08	0					103	55	2	0	0	0	0.72416	1	52920	52920		1.4819	0	1	2246600			25805	29217;14867	18584	18722	25272	25272					0.10935824271518868
KLHEEEKLKR	10	Unmodified	_KLHEEEKLKR_					0	0	0		SON-ITSN1|1|fusion;SON-ITSN1|2|fusion;ENSG00000205726|ENST00000381318|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-4|ITSN1;nc|ENSG00000205726|Q15811-13|ITSN1;nc|ENSG00000205726|Q15811-2|ITSN1;nc|ENSG00000205726|Q15811-7|ITSN1;nc|ENSG00000205726|Q15811-10|ITSN1;nc|ENSG00000205726|Q15811-3|ITSN1;nc|ENSG00000205726|Q15811-11|ITSN1;nc|ENSG00000205726|Q15811-12|ITSN1;nc|ENSG00000205726|Q15811-6|ITSN1;nc|ENSG00000205726|Q15811-5|ITSN1	SON-ITSN1|1|fusion;nc|ENSG00000205726|Q15811-5|ITSN1	SON-ITSN1|1|fusion	MSMS	A375_MHC_IP_R2	2	655.3240966796875	2	655.382968	1308.75138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.96	1	139.02	138.52	139.52	0.059906								0	0	0	0.15596	1	54467	54467		1.4819	0	1				25806	29217;14867	18584	18722	25273	25273					0.10935824271518868
KLHEIYIQA	9	Unmodified	_KLHEIYIQA_					0	0	0		nc|ENSG00000240184|Q9UN70-2|PCDHGC3;ENSG00000240184|ENST00000308177|PCDHGC3	nc|ENSG00000240184|Q9UN70-2|PCDHGC3	nc|ENSG00000240184|Q9UN70-2|PCDHGC3	MULTI-SECPEP	A375_MHC_IP_R1	1	558.2158203125	2	557.816399	1113.61824	-0.69994	-0.00039044	-0.15003	-8.3692E-05	-0.84997	-0.00047413	557.816285813824	41.052	0.40316	41.052	40.863	41.266	0					12	7	2	0	0	0	0.54812	1	14175	14175		24.991	3.454	1	3249600			25807	9771	18585	18723	25274	25274					0.06598004885699993
KLHEIYIQA	9	Unmodified	_KLHEIYIQA_					0	0	0		nc|ENSG00000240184|Q9UN70-2|PCDHGC3;ENSG00000240184|ENST00000308177|PCDHGC3	nc|ENSG00000240184|Q9UN70-2|PCDHGC3	nc|ENSG00000240184|Q9UN70-2|PCDHGC3	MULTI-MSMS	A375_MHC_IP_R2	2	372.94781494140625	3	372.213358	1113.61824	0.39933	0.00014864	0.070399	2.6203E-05	0.46973	0.00017484	372.21328133004977	40.15	0.35551	40.924	40.777	41.133	0.77451					15	6	4	0	0	0	0.32889	1	14861	14861		28.495	15.622	1	4155100			25808	9771	18585	18723	25275	25275					0.06598004885699993
KLHGKPIRI	9	Unmodified	_KLHGKPIRI_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	A375_MHC_IP_R1	1	354.9694519042969	3	354.569588	1060.68693	-0.21819	-7.7363E-05	0.020122	7.1348E-06	-0.19807	-7.0228E-05	354.5695763605003	19.293	0.43628	19.293	19.238	19.674	0					14	8	2	0	0	0	0.69884	1	4815	4815		7.1017	2.2047	1	8054900			25809	998	18586	18724	25276	25276					0.15901713976063547
KLHGKPIRI	9	Unmodified	_KLHGKPIRI_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MATCH	A375_MHC_IP_R2	2		3	354.569588	1060.68693	-0.48519	-0.00017204	0.13376	4.7426E-05	-0.35144	-0.00012461	354.9041087052672	18.848	0.060436	19.452	19.423	19.483	0.60308	0.079399	0.00011397	NaN	7.1017	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9051100			25810	998	18586	18724							0.15901713976063547
KLHGVNINV	9	Unmodified	_KLHGVNINV_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4;ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173933|ENST00000310092|RBM4;ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173933|ENST00000310092|RBM4	MULTI-SECPEP	A375_MHC_IP_R1	1	497.69537353515625	2	497.295633	992.576714	-0.74321	-0.0003696	0.3644	0.00018122	-0.37881	-0.00018838	497.2958093412817	38.143	1.0703	38.143	37.913	38.983	0					46	20	5	0	0	0	0.018928	1	12891	12891		99.799	45.966	1	102700000			25811	7843;7840	18587	18725	25277	25277					0.0801286891704649
KLHGVNINV	9	Unmodified	_KLHGVNINV_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4;ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173933|ENST00000310092|RBM4;ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173933|ENST00000310092|RBM4	MULTI-SECPEP	A375_MHC_IP_R2	2	497.6954650878906	2	497.295633	992.576714	-1.0707	-0.00053247	0.23763	0.00011817	-0.83311	-0.0004143	497.29571331605416	37.171	0.86501	37.942	37.665	38.53	0.7709					36	16	4	0	0	0	0.011017	1	13568	13568		123.45	71.821	1	48674000			25812	7843;7840	18587	18725	25278	25278					0.0801286891704649
KLHIVILKV	9	Unmodified	_KLHIVILKV_					0	0	0			REV__ENST00000584425.1_1_18:71740698-71749311:-|nuORF	REV__ENST00000584425.1_1_18:71740698-71749311:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	355.4598388671875	3	354.918105	1061.73249	0.075612	2.6836E-05	-0.093682	-3.3249E-05	-0.01807	-6.4134E-06	354.9180240873167	44.21	0.40896	44.21	43.909	44.318	0					18	7	3	0	0	0	0.80713	1	15366	15366		2.086	1.1237	1	1736900	+		25813	19284	18588	18726	25279	25279					0.20408939438470952
KLHTLPQFFRR	11	Unmodified	_KLHTLPQFFRR_					0	0	0			REV__CPN2|p.L164F|1|0.43|ENSG00000178772|chr3:194342213-194342213|G/A|missense_variant	REV__CPN2|p.L164F|1|0.43|ENSG00000178772|chr3:194342213-194342213|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	481.67864990234375	3	481.617489	1441.83064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.95	1	145.95	145.45	146.45	0								0	0	0	0.16358	1	55877	55877		0.094841	0	1		+		25814	15908	18589	18727	25280	25280					0.1273951601635872
KLHYILWNYHF	11	Unmodified	_KLHYILWNYHF_					0	0	0			REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	MULTI-MSMS	A375_MHC_IP_R2	2	511.9883728027344	3	511.938228	1532.79285	-0.97065	-0.00049691	1.9888	0.0010181	1.0181	0.00052121	512.2739256384806	34.997	0.60513	35.76	35.425	36.03	0.76338					33	11	5	0	0	0	0.73795	1	12747	12747		1.3296	0.82369	1	3644600	+		25815	21317	18590	18728	25281	25281					0.04777005030905457
KLHYVVTEV	9	Unmodified	_KLHYVVTEV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.T2707Mfs*5|1|0.21|ENSG00000196367|chr7:98976664-98976688|CGCTGATGTTGGAGCACCAGGCTTT/-|frameshift_variant;TRRAP|p.I1891Sfs*37|1|0.32|ENSG00000196367|chr7:98953393-98953393|T/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	A375_MHC_IP_R1	1	363.609619140625	3	363.209725	1086.60735	0.26295	9.5504E-05	-0.44839	-0.00016286	-0.18544	-6.7354E-05	363.20948655309513	42.278	0.45421	42.278	41.982	42.436	0					19	8	3	0	0	0	0.4867	1	14632	14632		14.405	6.7964	1	3252300			25816	9031	18591	18729	25282	25282					0.06750602511442594
KLHYVVTEV	9	Unmodified	_KLHYVVTEV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.T2707Mfs*5|1|0.21|ENSG00000196367|chr7:98976664-98976688|CGCTGATGTTGGAGCACCAGGCTTT/-|frameshift_variant;TRRAP|p.I1891Sfs*37|1|0.32|ENSG00000196367|chr7:98953393-98953393|T/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	A375_MHC_IP_R1	1	544.7108764648438	2	544.310949	1086.60735	-0.48339	-0.00026311	-0.092877	-5.0554E-05	-0.57627	-0.00031367	544.3107914321364	42.29	0.4547	42.29	42.032	42.487	0					14	8	2	0	0	0	0.010171	1	14641	14641		96.111	46.178	1	2883000			25817	9031	18591	18729	25283	25283					0.06750602511442594
KLHYVVTEV	9	Unmodified	_KLHYVVTEV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.T2707Mfs*5|1|0.21|ENSG00000196367|chr7:98976664-98976688|CGCTGATGTTGGAGCACCAGGCTTT/-|frameshift_variant;TRRAP|p.I1891Sfs*37|1|0.32|ENSG00000196367|chr7:98953393-98953393|T/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	A375_MHC_IP_R2	2	363.60955810546875	3	363.209725	1086.60735	-0.28621	-0.00010395	0.064241	2.3333E-05	-0.22197	-8.0621E-05	363.20963767753744	41.317	0.76145	42.091	41.794	42.555	0.77451					24	14	3	0	0	0	0.29981	1	15326	15326		22.658	8.2527	1	4949400			25818	9031	18591	18729	25284	25284					0.06750602511442594
KLHYVVTEV	9	Unmodified	_KLHYVVTEV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.T2707Mfs*5|1|0.21|ENSG00000196367|chr7:98976664-98976688|CGCTGATGTTGGAGCACCAGGCTTT/-|frameshift_variant;TRRAP|p.I1891Sfs*37|1|0.32|ENSG00000196367|chr7:98953393-98953393|T/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	A375_MHC_IP_R2	2	544.710693359375	2	544.310949	1086.60735	-1.0209	-0.00055567	0.5489	0.00029877	-0.47197	-0.0002569	544.3110463139657	41.328	0.35389	42.103	41.895	42.249	0.77451					13	6	3	0	0	0	0.32966	1	15359	15359		62.573	62.573	1	2659200			25819	9031	18591	18729	25285	25285					0.06750602511442594
KLIAKIPTI	9	Unmodified	_KLIAKIPTI_					0	0	0		ENSG00000198963|ENST00000376896|RORB;nc|ENSG00000198963|Q92753|RORB	ENSG00000198963|ENST00000376896|RORB	ENSG00000198963|ENST00000376896|RORB	MULTI-SECPEP	A375_MHC_IP_R2	2	498.1446838378906	2	498.844428	995.674303	-0.74386	-0.00037107	-0.32671	-0.00016298	-1.0706	-0.00053404	498.8442559135003	62.124	0.45731	62.866	62.622	63.079	0.74263					13	8	2	0	0	0	0.61452	1	23501	23501		15.248	3.6082	1	760880			25820	9385	18592	18730	25286	25286					0.17629257793169018
KLIDDVHRL	9	Unmodified	_KLIDDVHRL_					0	0	0		ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA;ENST00000528744.5_1_11:126137442-126138699:-|nuORF	ENSG00000182934|ENST00000332118|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	MULTI-MSMS	A375_MHC_IP_R1	1	370.62078857421875	3	370.220624	1107.64004	0.5719	0.00021173	-0.019526	-7.229E-06	0.55237	0.0002045	370.22059186948513	39.109	0.86265	39.109	38.832	39.694	0					46	16	4	0	0	0	0.034721	2	13313	13313;13358		70.929	43.705	1	60102000			25821	8448	18593	18731	25287;25288	25287					0.09052809634272307
KLIDDVHRL	9	Unmodified	_KLIDDVHRL_					0	0	0		ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA;ENST00000528744.5_1_11:126137442-126138699:-|nuORF	ENSG00000182934|ENST00000332118|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	MULTI-SECPEP	A375_MHC_IP_R1	1	554.201171875	2	554.827298	1107.64004	-0.28205	-0.00015649	0.047941	2.6599E-05	-0.23411	-0.00012989	554.8273265460216	39.143	0.40752	39.143	38.933	39.34	0					13	7	2	0	0	0	0.29872	1	13337	13337		44.392	26.019	1	3165300			25822	8448	18593	18731	25289	25289					0.09052809634272307
KLIDDVHRL	9	Unmodified	_KLIDDVHRL_					0	0	0		ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA;ENST00000528744.5_1_11:126137442-126138699:-|nuORF	ENSG00000182934|ENST00000332118|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	MULTI-MSMS	A375_MHC_IP_R2	2	370.62060546875	3	370.220624	1107.64004	0.055945	2.0712E-05	-0.034378	-1.2727E-05	0.021568	7.9848E-06	370.2205591397663	38.094	0.71553	38.869	38.585	39.3	0.77451					37	13	4	0	0	0	0.0091377	1	13992	13992		101.54	64.469	1	45872000			25823	8448	18593	18731	25290	25290					0.09052809634272307
KLIDDVHRL	9	Unmodified	_KLIDDVHRL_					0	0	0		ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA;ENST00000528744.5_1_11:126137442-126138699:-|nuORF	ENSG00000182934|ENST00000332118|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	MULTI-SECPEP	A375_MHC_IP_R2	2	554.21337890625	2	554.827298	1107.64004	-1.0454	-0.00058002	0.1055	5.8537E-05	-0.9399	-0.00052148	554.8273500344065	38.094	0.30956	38.869	38.687	38.997	0.77451					8	5	2	0	0	0	0.35788	1	14016	14016		46.022	6.0726	1	2388600			25824	8448	18593	18731	25291	25291					0.09052809634272307
KLIDDVHRLF	10	Unmodified	_KLIDDVHRLF_					0	0	0		ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA;ENST00000528744.5_1_11:126137442-126138699:-|nuORF	ENSG00000182934|ENST00000332118|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	MULTI-MSMS	A375_MHC_IP_R1	1	419.64337158203125	3	419.243429	1254.70846	0.11917	4.9959E-05	-0.16932	-7.0985E-05	-0.050151	-2.1026E-05	419.24336308999256	73.683	0.50664	73.683	73.437	73.943	0					19	9	3	0	0	0	0.095191	1	26834	26834		64.688	43.446	1	3041200			25825	8448	18594	18732	25292	25292					0.09129054214122334
KLIDDVHRLF	10	Unmodified	_KLIDDVHRLF_					0	0	0		ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA;ENST00000528744.5_1_11:126137442-126138699:-|nuORF	ENSG00000182934|ENST00000332118|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	MULTI-MSMS	A375_MHC_IP_R2	2	419.6432800292969	3	419.243429	1254.70846	-0.16983	-7.12E-05	-0.27535	-0.00011544	-0.44518	-0.00018664	419.2432502410552	72.668	0.50862	73.404	73.175	73.684	0.73541					20	9	3	0	0	0	0.086529	1	27575	27575		66.55	44.441	1	4810900			25826	8448	18594	18732	25293	25293					0.09129054214122334
KLIDGQVIQL	10	Unmodified	_KLIDGQVIQL_					0	0	0		nc|ENSG00000166478|P52747-2|ZNF143;nc|ENSG00000166478|P52747-3|ZNF143;ENSG00000166478|ENST00000396602|ZNF143	nc|ENSG00000166478|P52747-2|ZNF143	nc|ENSG00000166478|P52747-2|ZNF143	MULTI-SECPEP	A375_MHC_IP_R1	1	563.1766967773438	2	563.845156	1125.67576	-0.63104	-0.00035581	0.063637	3.5881E-05	-0.5674	-0.00031993	563.8450670416411	86.146	0.75983	86.146	85.717	86.477	0					36	14	4	0	0	0	0.072569	1	31571	31571		79.596	13.14	1	6280500			25827	7079	18595	18733	25294	25294					0.11794847091277916
KLIDKLDSL	9	Unmodified	_KLIDKLDSL_					0	0	0		nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-2|DOCK4;ENST00000469898.1_7:111428716-111462476:-|nuORF	nc|ENSG00000128512|Q8N1I0|DOCK4	nc|ENSG00000128512|Q8N1I0|DOCK4	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1588134765625	2	522.818607	1043.62266	-0.65821	-0.00034413	-0.17438	-9.1172E-05	-0.8326	-0.0004353	522.8184903008234	62.462	0.75942	63.205	62.925	63.685	0.74263					41	14	4	0	0	0	7.4118E-06	1	23670	23670		155.95	27.381	1	26910000			25828	4139	18596	18734	25295	25295					0.10259469308630287
KLIDNERK	8	Unmodified	_KLIDNERK_					0	0	0		tr|U7SYR5|U7SYR5_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00888PE=3SV=1	tr|U7SYR5|U7SYR5_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00888PE=3SV=1	tr|U7SYR5|U7SYR5_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00888PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	508.6979675292969	2	508.298373	1014.58219	-0.56164	-0.00028548	-0.22806	-0.00011592	-0.7897	-0.0004014	508.29815274658375	27.102	0.45308	27.102	26.928	27.381	0					14	8	2	0	0	0	0.25204	1	8177	8177		81.89	8.9223	1	8709500			25829	29842	18597	18735	25296	25296					0.07548547708847764
KLIDNERK	8	Unmodified	_KLIDNERK_					0	0	0		tr|U7SYR5|U7SYR5_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00888PE=3SV=1	tr|U7SYR5|U7SYR5_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00888PE=3SV=1	tr|U7SYR5|U7SYR5_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00888PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	508.6979064941406	2	508.298373	1014.58219	-1.1271	-0.00057288	0.26971	0.00013709	-0.85735	-0.00043579	508.2983722430756	26.423	0.4559	27.083	26.907	27.363	0.65992					18	8	3	0	0	0	0.33238	1	8944	8944		56.177	0.6743	1	6007600			25830	29842	18597	18735	25297	25297					0.07548547708847764
KLIDNERK	8	Unmodified	_KLIDNERK_					0	0	0		tr|U7SYR5|U7SYR5_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00888PE=3SV=1	tr|U7SYR5|U7SYR5_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00888PE=3SV=1	tr|U7SYR5|U7SYR5_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00888PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	508.298373	1014.58219	-1.1271	-0.00057288	0.26971	0.00013709	-0.85735	-0.00043579	508.2983722430756	26.423	0.4559	27.083	26.907	27.363	0.65992	-0.0096884	0.00031878	NaN	81.89	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6007600			25831	29842	18597	18735							0.07548547708847764
KLIDNNINV	9	Unmodified	_KLIDNNINV_					0	0	0		ENSG00000105855|ENST00000222573|ITGB8;nc|ENSG00000105855|P26012-2|ITGB8	ENSG00000105855|ENST00000222573|ITGB8	ENSG00000105855|ENST00000222573|ITGB8	MULTI-SECPEP	A375_MHC_IP_R1	1	522.1981201171875	2	521.798206	1041.58186	-0.29919	-0.00015612	0.0060844	3.1748E-06	-0.29311	-0.00015294	521.7981655757466	53.962	0.55657	53.962	53.707	54.263	0					24	10	3	0	0	0	0.13208	1	19246	19246		57.722	5.4536	1	8373400			25832	2644	18598	18736	25298	25298					0.0627312798899311
KLIDNNINV	9	Unmodified	_KLIDNNINV_					0	0	0		ENSG00000105855|ENST00000222573|ITGB8;nc|ENSG00000105855|P26012-2|ITGB8	ENSG00000105855|ENST00000222573|ITGB8	ENSG00000105855|ENST00000222573|ITGB8	MULTI-MATCH	A375_MHC_IP_R2	2		2	521.798206	1041.58186	-1.175	-0.00061311	0.10831	5.6515E-05	-1.0667	-0.0005566	521.7982007922149	53.153	0.50929	53.904	53.638	54.147	0.75105	-0.029099	5.1837E-05	NaN	57.722	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7184500			25833	2644	18598	18736							0.0627312798899311
KLIDPQTQV	9	Unmodified	_KLIDPQTQV_					0	0	0		ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	521.7001342773438	2	521.300581	1040.58661	-0.52807	-0.00027528	0.13741	7.1634E-05	-0.39066	-0.00020365	521.3006408745475	43.884	0.56126	43.884	43.603	44.165	0					23	10	3	0	0	0	0.23894	1	15267	15267		40.239	25.401	1	11707000			25834	6248	18599	18737	25299	25299					0.06794012131740601
KLIDPQTQV	9	Unmodified	_KLIDPQTQV_					0	0	0		ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	521.7001342773438	2	521.300581	1040.58661	-0.5139	-0.00026789	-0.53073	-0.00027667	-1.0446	-0.00054456	521.3003168635796	43.095	0.45525	43.867	43.573	44.028	0.7724					23	8	4	0	0	0	0.036758	1	16021	16021		89.401	43.38	1	8468900			25835	6248	18599	18737	25300	25300					0.06794012131740601
KLIDVTNIYW	10	Unmodified	_KLIDVTNIYW_					0	0	0		ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	MULTI-SECPEP	A375_MHC_IP_R2	2	633.2501831054688	2	632.850438	1263.68632	-0.58875	-0.00037259	0.56832	0.00035966	-0.020426	-1.2926E-05	632.8505744436501	113.88	0.3989	114.59	114.38	114.78	0.70985					10	7	2	0	0	0	0.68818	1	42973	42973		51.415	23.786	1	2787600			25836	4196	18600	18738	25301	25301					0.0650282974570473
KLIDVTNIYW	10	Unmodified	_KLIDVTNIYW_					0	0	0		ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	MULTI-MATCH	A375_MHC_IP_R1	1		2	632.850438	1263.68632	-0.19137	-0.00012111	0.090026	5.6973E-05	-0.10135	-6.4137E-05	632.8503332070378	114.86	0.50644	114.86	114.46	114.97	0	0.13316	-0.00027814	NaN	51.415	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2603300			25837	4196	18600	18738							0.0650282974570473
KLIEDKKNV	9	Unmodified	_KLIEDKKNV_					0	0	0			REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1	REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	544.1834106445312	2	543.829506	1085.64446	-1.1758	-0.00063946	0.17208	9.3585E-05	-1.0038	-0.00054587	543.8295949358923	58.755	0.50763	59.502	59.286	59.793	0.74714					13	9	2	0	0	0	0.59614	1	22244	22244		28.495	4.7047	1	2245800	+		25838	28567	18601	18739	25302	25302					0.10506274057183873
KLIEELETL	9	Unmodified	_KLIEELETL_					0	0	0		ENST00000374721.7_1_10:35500449-35500728:+|nuORF;nc|ENSG00000095794|Q03060-11|CREM;nc|ENSG00000095794|Q03060|CREM;nc|ENSG00000095794|Q03060-15|CREM;nc|ENSG00000095794|Q03060-16|CREM;nc|ENSG00000095794|Q03060-20|CREM;nc|ENSG00000095794|Q03060-22|CREM;nc|ENSG00000095794|Q03060-12|CREM;nc|ENSG00000095794|Q03060-7|CREM;nc|ENSG00000095794|Q03060-2|CREM;nc|ENSG00000095794|Q03060-30|CREM;nc|ENSG00000095794|Q03060-17|CREM;nc|ENSG00000095794|Q03060-13|CREM;nc|ENSG00000095794|Q03060-14|CREM;nc|ENSG00000095794|Q03060-19|CREM;nc|ENSG00000095794|Q03060-28|CREM;nc|ENSG00000095794|Q03060-29|CREM;nc|ENSG00000095794|Q03060-10|CREM;nc|ENSG00000095794|Q03060-27|CREM;nc|ENSG00000095794|Q03060-1|CREM	ENST00000374721.7_1_10:35500449-35500728:+|nuORF	ENST00000374721.7_1_10:35500449-35500728:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	544.7153930664062	2	544.315897	1086.61724	-0.6526	-0.00035522	0.072301	3.9354E-05	-0.5803	-0.00031586	544.3158081959332	91.405	0.65797	91.405	91.098	91.756	0					39	12	4	0	0	0	0.061442	1	33564	33564		72.968	19.135	1	9140800			25839	11257	18602	18740	25303	25303					0.07739745726144065
KLIEELETL	9	Unmodified	_KLIEELETL_					0	0	0		ENST00000374721.7_1_10:35500449-35500728:+|nuORF;nc|ENSG00000095794|Q03060-11|CREM;nc|ENSG00000095794|Q03060|CREM;nc|ENSG00000095794|Q03060-15|CREM;nc|ENSG00000095794|Q03060-16|CREM;nc|ENSG00000095794|Q03060-20|CREM;nc|ENSG00000095794|Q03060-22|CREM;nc|ENSG00000095794|Q03060-12|CREM;nc|ENSG00000095794|Q03060-7|CREM;nc|ENSG00000095794|Q03060-2|CREM;nc|ENSG00000095794|Q03060-30|CREM;nc|ENSG00000095794|Q03060-17|CREM;nc|ENSG00000095794|Q03060-13|CREM;nc|ENSG00000095794|Q03060-14|CREM;nc|ENSG00000095794|Q03060-19|CREM;nc|ENSG00000095794|Q03060-28|CREM;nc|ENSG00000095794|Q03060-29|CREM;nc|ENSG00000095794|Q03060-10|CREM;nc|ENSG00000095794|Q03060-27|CREM;nc|ENSG00000095794|Q03060-1|CREM	ENST00000374721.7_1_10:35500449-35500728:+|nuORF	ENST00000374721.7_1_10:35500449-35500728:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	544.315897	1086.61724	-0.70521	-0.00038386	0.42071	0.000229	-0.2845	-0.00015486	544.3158021630351	90.516	0.9635	91.251	90.904	91.868	0.7345	-0.0772	0.00027023	NaN	72.968	50	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8631800			25840	11257	18602	18740							0.07739745726144065
KLIEEVHAV	9	Unmodified	_KLIEEVHAV_					0	0	0		nc|ENSG00000042753|P53680-2|AP2S1;ENSG00000042753|ENST00000263270|AP2S1;ENST00000597421.1_1_19:47349063-47354074:-|nuORF	nc|ENSG00000042753|P53680-2|AP2S1	nc|ENSG00000042753|P53680-2|AP2S1	MULTI-MSMS	A375_MHC_IP_R1	1	519.7030029296875	2	519.303124	1036.5917	-0.18336	-9.5219E-05	0.23173	0.00012034	0.04837	2.5119E-05	519.3031534474575	38.823	0.40639	38.823	38.526	38.933	0					12	7	3	0	0	0	0.16945	1	13209	13209		40.239	23.126	1	4160500			25841	1176	18603	18741	25304	25304					0.07486315994378856
KLIEEVHAV	9	Unmodified	_KLIEEVHAV_					0	0	0		nc|ENSG00000042753|P53680-2|AP2S1;ENSG00000042753|ENST00000263270|AP2S1;ENST00000597421.1_1_19:47349063-47354074:-|nuORF	nc|ENSG00000042753|P53680-2|AP2S1	nc|ENSG00000042753|P53680-2|AP2S1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	519.303124	1036.5917	-0.85728	-0.00044519	0.10089	5.2392E-05	-0.75639	-0.0003928	519.3031313719041	37.865	0.30852	38.64	38.483	38.791	0.77451	-0.091501	-8.4552E-05	NaN	40.239	13	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3777300			25842	1176	18603	18741							0.07486315994378856
KLIEKNYFL	9	Unmodified	_KLIEKNYFL_					0	0	0		ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-SECPEP	A375_MHC_IP_R1	1	390.2969665527344	3	389.897258	1166.66995	0.12882	5.0226E-05	-0.035882	-1.399E-05	0.092937	3.6236E-05	389.8971580641059	61.253	0.51035	61.253	60.973	61.483	0					20	9	3	0	0	0	0.14572	1	22067	22067		49.527	24.536	1	7623800			25843	1885	18604	18742	25305	25305					0.09327748579607942
KLIEKNYFL	9	Unmodified	_KLIEKNYFL_					0	0	0		ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-SECPEP	A375_MHC_IP_R1	1	584.7418212890625	2	584.342249	1166.66995	-0.28964	-0.00016925	-0.25956	-0.00015167	-0.5492	-0.00032092	584.3420320570865	61.253	0.6123	61.253	61.024	61.636	0					24	11	3	0	0	0	0.011357	1	22065	22065		125.53	59.072	1	10405000			25844	1885	18604	18742	25306	25306					0.09327748579607942
KLIEKNYFL	9	Unmodified	_KLIEKNYFL_					0	0	0		ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-SECPEP	A375_MHC_IP_R2	2	390.2973327636719	3	389.897258	1166.66995	-0.4853	-0.00018922	0.36033	0.00014049	-0.12497	-4.8727E-05	389.89735008971286	60.236	0.66249	60.981	60.701	61.364	0.74503					23	12	3	0	0	0	0.13064	1	22785	22785		51.415	32.053	1	8839800			25845	1885	18604	18742	25307	25307					0.09327748579607942
KLIEKNYFL	9	Unmodified	_KLIEKNYFL_					0	0	0		ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-SECPEP	A375_MHC_IP_R2	2	584.1731567382812	2	584.342249	1166.66995	-0.77898	-0.00045519	0.036339	2.1234E-05	-0.74264	-0.00043395	584.3421703662253	60.218	0.50983	60.964	60.702	61.212	0.74575					21	9	3	0	0	0	0.05217	1	22789	22789		89.401	56.615	1	8038100			25846	1885	18604	18742	25308	25308					0.09327748579607942
KLIELKAEI	9	Unmodified	_KLIELKAEI_					0	0	0		ENST00000568485.1_1_16:67226831-67227071:+|nuORF;ENST00000567007.5_1_16:67226831-67232023:+|nuORF;ENSG00000205250|ENST00000379378|E2F4	ENST00000568485.1_1_16:67226831-67227071:+|nuORF	ENST00000568485.1_1_16:67226831-67227071:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	529.2362670898438	2	528.8368	1055.65905	-0.8891	-0.00047019	-0.59569	-0.00031502	-1.4848	-0.00078521	528.8365259596832	60.042	0.50682	60.789	60.501	61.008	0.74714					18	9	3	0	0	0	0.14438	1	22705	22705		59.052	0	1	3632400			25847	9503	18605	18743	25309	25309					0.13344346205326474
KLIELLPVR	9	Unmodified	_KLIELLPVR_					0	0	0			REV__nc|ENSG00000107290|Q7Z333-3|SETX	REV__nc|ENSG00000107290|Q7Z333-3|SETX	MSMS	A375_MHC_IP_R1	1	361.3031005859375	3	360.909498	1079.70667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.301	1	30.301	29.801	30.801	0								0	0	0	0.15273	1	9613	9613		12.175	1.3752	1		+		25848	17479	18606	18744	25310	25310					0.17000045196186875
KLIFIILKKIL	11	Unmodified	_KLIFIILKKIL_					0	0	0			REV__ENST00000531550.1_1_11:118007744-118012097:-|nuORF	REV__ENST00000531550.1_1_11:118007744-118012097:-|nuORF	MSMS	A375_MHC_IP_R2	2	447.96978759765625	3	447.991382	1340.95232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.077	1	19.68	19.18	20.18	0.60308								0	0	0	0.1636	1	5813	5813		0	0	1		+		25849	21438	18607	18745	25311	25311					0.29547745326203767
KLIGDPNLEFV	11	Unmodified	_KLIGDPNLEFV_					0	0	0		ENSG00000132341|ENST00000543796|RAN;ENST00000444720.1_1_13:21321226-21321529:-|nuORF;ENST00000455094.1_1_6:30454046-30454364:+|nuORF	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-SECPEP	A375_MHC_IP_R2	2	623.2158813476562	2	622.847896	1243.68124	-0.83737	-0.00052156	0.23522	0.00014651	-0.60215	-0.00037505	623.3497162530332	96.62	0.3038	97.376	97.115	97.419	0.75586					9	5	2	0	0	0	0.94463	1	36646	36646		23.801	23.801	1	1401400			25850	4395	18608	18746	25312	25312					0.0691452588307584
KLIGQVHEV	9	Unmodified	_KLIGQVHEV_					0	0	0		ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MULTI-SECPEP	A375_MHC_IP_R1	1	512.2029418945312	2	511.803291	1021.59203	-0.81687	-0.00041808	-0.13151	-6.7307E-05	-0.94838	-0.00048539	511.80327354383945	29.966	0.50346	29.966	29.798	30.301	0					18	9	3	0	0	0	0.087712	1	9448	9448		57.722	28.64	1	20098000			25851	1572	18609	18747	25313	25313					0.08209735714228827
KLIGQVHEV	9	Unmodified	_KLIGQVHEV_					0	0	0		ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MULTI-MSMS	A375_MHC_IP_R2	2	512.2024536132812	2	511.803291	1021.59203	-1.6048	-0.00082136	0.20411	0.00010446	-1.4007	-0.0007169	511.8033882151758	29.106	0.70154	29.805	29.584	30.286	0.69872					24	13	3	0	0	0	0.010852	1	10117	10117		179.17	101.02	1	19749000			25852	1572	18609	18747	25314	25314					0.08209735714228827
KLIKFKRKFT	10	Unmodified	_KLIKFKRKFT_					0	0	0			REV__ENSG00000174405|ENST00000442234|LIG4	REV__ENSG00000174405|ENST00000442234|LIG4	MULTI-MSMS	A375_MHC_IP_R1	1	655.7572021484375	2	654.929357	1307.84416	-0.51311	-0.00033605	1.5461	0.0010126	1.033	0.00067654	655.431702291946	87.223	0.71127	87.223	86.831	87.542	0					15	13	2	0	0	0	0.72658	1	32087	32087		0.40072	0	1	2924900	+		25853	21282	18610	18748	25315	25315					0.20255373795589549
KLIKGVERL	9	Unmodified	_KLIKGVERL_					0	0	0		ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2	ENSG00000173273|ENST00000310430|TNKS	ENSG00000173273|ENST00000310430|TNKS	MULTI-MSMS	A375_MHC_IP_R1	1	352.9693298339844	3	352.569365	1054.68626	-0.31513	-0.00011111	0.011449	4.0366E-06	-0.30368	-0.00010707	352.5693299443514	28.97	0.55776	28.97	28.745	29.302	0					17	10	3	0	0	0	0.053667	1	9012	9012		62.869	7.62	1	5900600			25854	7783	18611	18749	25316	25316					0.1611087453638902
KLIKGVERL	9	Unmodified	_KLIKGVERL_					0	0	0		ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2	ENSG00000173273|ENST00000310430|TNKS	ENSG00000173273|ENST00000310430|TNKS	MULTI-MSMS	A375_MHC_IP_R2	2	352.9692077636719	3	352.569365	1054.68626	-0.33706	-0.00011884	-0.073684	-2.5979E-05	-0.41074	-0.00014481	352.56931306770605	28.002	0.35586	28.681	28.502	28.858	0.67857					16	6	3	0	0	0	0.053667	1	9635	9635		62.869	11.381	1	7778800			25855	7783	18611	18749	25317	25317					0.1611087453638902
KLIKSLEAA	9	Unmodified	_KLIKSLEAA_					0	0	0		ENSG00000120705|ENST00000360541|ETF1;ENST00000499810.6_1_5:137878520-137878607:-|nuORF;ENST00000507939.5_3_5:137865363-137878607:-|nuORF	ENSG00000120705|ENST00000360541|ETF1	ENSG00000120705|ENST00000360541|ETF1	MULTI-SECPEP	A375_MHC_IP_R1	1	487.2078857421875	2	486.808042	971.601532	-0.43562	-0.00021206	0.1469	7.1514E-05	-0.28871	-0.00014055	486.80807959136536	32.408	0.81232	32.408	32.024	32.836	0					38	15	4	0	0	0	0.011357	1	10434	10434		103.42	49.587	1	16460000			25856	3680	18612	18750	25318	25318					0.11459503999753906
KLIKSLEAA	9	Unmodified	_KLIKSLEAA_					0	0	0		ENSG00000120705|ENST00000360541|ETF1;ENST00000499810.6_1_5:137878520-137878607:-|nuORF;ENST00000507939.5_3_5:137865363-137878607:-|nuORF	ENSG00000120705|ENST00000360541|ETF1	ENSG00000120705|ENST00000360541|ETF1	MULTI-SECPEP	A375_MHC_IP_R2	2	487.2075500488281	2	486.808042	971.601532	-0.62176	-0.00030268	0.17774	8.6525E-05	-0.44402	-0.00021615	486.80806963070677	31.421	0.81529	32.139	31.821	32.636	0.71856					32	15	3	0	0	0	0.011357	1	11093	11093		114.2	42.279	1	14935000			25857	3680	18612	18750	25319	25319					0.11459503999753906
KLIKTSPEL	9	Unmodified	_KLIKTSPEL_					0	0	0		ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	MULTI-SECPEP	A375_MHC_IP_R1	1	514.2003173828125	2	514.82115	1027.62775	-0.36347	-0.00018712	-0.29049	-0.00014955	-0.65396	-0.00033667	514.8208865091777	35.888	0.35659	35.888	35.676	36.033	0					11	6	2	0	0	0	0.53098	1	11995	11995		27.223	0	1	1751800			25858	3264	18613	18751	25320	25320					0.1150377317121638
KLILLITQV	9	Unmodified	_KLILLITQV_					0	0	0		ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	MULTI-SECPEP	A375_MHC_IP_R1	1	521.2573852539062	2	520.857535	1039.70052	-0.36734	-0.00019133	-0.053914	-2.8082E-05	-0.42125	-0.00021941	520.8575296384747	110.69	0.61246	110.69	110.44	111.05	0					24	11	3	0	0	0	0.23313	1	40586	40586		57.249	9.5004	1	4823400			25859	6726	18614	18752	25321	25321					0.18225526964647543
KLILLITQV	9	Unmodified	_KLILLITQV_					0	0	0		ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	MULTI-SECPEP	A375_MHC_IP_R2	2	521.2571411132812	2	520.857535	1039.70052	-0.51535	-0.00026842	-0.30395	-0.00015832	-0.8193	-0.00042674	520.857287948219	109.59	0.8643	110.34	110.08	110.95	0.74683					24	16	2	0	0	0	0.34746	1	41346	41346		38.176	11.907	1	4123900			25860	6726	18614	18752	25322	25322					0.18225526964647543
KLILNRCIAV	10	Unmodified	_KLILNRCIAV_					0	0	0			REV__ENST00000588087.5_1_17:76116732-76122925:-|nuORF	REV__ENST00000588087.5_1_17:76116732-76122925:-|nuORF	MSMS	A375_MHC_IP_R2	2	381.58441162109375	3	381.574121	1141.70053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.672	1	57.422	56.922	57.922	0.75015								0	0	0	0.15583	1	21423	21423		1.9064	0.57684	1		+		25861	19276	18615	18753	25323	25323					0.13535203693004405
KLINQVNTI	9	Unmodified	_KLINQVNTI_					0	0	0		ENSG00000075539|ENST00000358350|FRYL;nc|ENSG00000075539|O94915-2|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	A375_MHC_IP_R1	1	522.2162475585938	2	521.816399	1041.61824	-0.53824	-0.00028086	0.12479	6.5115E-05	-0.41345	-0.00021575	521.8163910002982	50.379	0.35772	50.379	50.153	50.51	0					15	6	3	0	0	0	0.047455	1	17861	17861		58.679	0	1	3163200			25862	1612	18616	18754	25324	25324					0.09910004885705348
KLINQVNTI	9	Unmodified	_KLINQVNTI_					0	0	0		ENSG00000075539|ENST00000358350|FRYL;nc|ENSG00000075539|O94915-2|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	A375_MHC_IP_R2	2	522.216064453125	2	521.816399	1041.61824	-0.88197	-0.00046023	0.20611	0.00010755	-0.67586	-0.00035267	521.8165254752621	49.445	0.40281	50.203	49.995	50.398	0.75736					15	7	3	0	0	0	0.05755	1	18586	18586		61.357	7.5247	1	3293300			25863	1612	18616	18754	25325	25325					0.09910004885705348
KLIPFLEKL	9	Unmodified	_KLIPFLEKL_					0	0	0		ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	MULTI-SECPEP	A375_MHC_IP_R1	1	368.30859375	3	367.574116	1099.70052	0.22922	8.4256E-05	0.26974	9.9149E-05	0.49896	0.00018341	367.9085322334764	95.862	0.40389	95.862	95.614	96.018	0					12	7	2	0	0	0	0.65527	1	35258	35258		8.4443	4.8572	1	1473400			25864	4912	18617	18755	25326	25326					0.15465526964658238
KLIPFLEKL	9	Unmodified	_KLIPFLEKL_					0	0	0		ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2572631835938	2	550.857535	1099.70052	-0.57814	-0.00031847	0.14895	8.2049E-05	-0.42919	-0.00023642	550.8575419542667	95.839	1.3674	95.839	95.465	96.833	0					60	26	4	0	0	0	0.0095758	1	35173	35173		151.48	44.54	1	23601000			25865	4912	18617	18755	25327	25327					0.15465526964658238
KLIPFLEKL	9	Unmodified	_KLIPFLEKL_					0	0	0		ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	MULTI-MSMS	A375_MHC_IP_R2	2	550.6166381835938	2	550.857535	1099.70052	-0.53478	-0.00029459	0.030172	1.662E-05	-0.50461	-0.00027797	550.8574568942839	94.705	1.4234	95.45	95.122	96.545	0.74474					60	27	4	0	0	0	0.014148	1	36003	36003		107.56	30.739	1	25966000			25866	4912	18617	18755	25328	25328					0.15465526964658238
KLIPFSPAV	9	Unmodified	_KLIPFSPAV_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-SECPEP	A375_MHC_IP_R2	2	486.69964599609375	2	486.299853	970.585153	-0.50147	-0.00024386	-0.063238	-3.0752E-05	-0.56471	-0.00027462	486.29984587746173	90.22	0.56018	90.952	90.648	91.208	0.7318					15	10	2	0	0	0	0.38578	1	34353	34353		34.402	2.0962	1	1392700			25867	9143	18618	18756	25329	25329					0.09868422833653767
KLIPQLPTL	9	Unmodified	_KLIPQLPTL_					0	0	0		ENSG00000025039|ENST00000369415|RRAGD;ENST00000496778.1_1_1:39317285-39318153:-|nuORF;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENSG00000116954|ENST00000373001|RRAGC	ENSG00000025039|ENST00000369415|RRAGD	ENSG00000025039|ENST00000369415|RRAGD	MULTI-MSMS	A375_MHC_IP_R1	1	512.2342529296875	2	511.83406	1021.65357	-0.42618	-0.00021813	0.35903	0.00018376	-0.067152	-3.4371E-05	511.83418510501986	102.94	0.914	102.94	102.56	103.47	0					45	17	4	0	0	0	0.0070829	1	37757	37757		131.27	72.589	1	12163000			25868	1085	18619	18757	25330	25330					0.14360667413507144
KLIPQLPTL	9	Unmodified	_KLIPQLPTL_					0	0	0		ENSG00000025039|ENST00000369415|RRAGD;ENST00000496778.1_1_1:39317285-39318153:-|nuORF;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENSG00000116954|ENST00000373001|RRAGC	ENSG00000025039|ENST00000369415|RRAGD	ENSG00000025039|ENST00000369415|RRAGD	MULTI-MSMS	A375_MHC_IP_R2	2	512.23388671875	2	511.83406	1021.65357	-0.7082	-0.00036248	0.1331	6.8124E-05	-0.57511	-0.00029436	511.8340544925123	101.93	0.81319	102.69	102.31	103.12	0.76428					38	15	3	0	0	0	0.0070829	1	38563	38563		131.27	72.589	1	12079000			25869	1085	18619	18757	25331	25331					0.14360667413507144
KLIQELKTA	9	Unmodified	_KLIQELKTA_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-SECPEP	A375_MHC_IP_R2	2	521.96484375	2	522.326599	1042.63865	-0.63076	-0.00032946	-0.51124	-0.00026703	-1.142	-0.0005965	522.3264874428265	32.519	0.3056	33.256	33.112	33.417	0.73691					7	5	2	0	0	0	0.72623	1	11610	11610		9.544	2.4423	1	2034600			25870	2362	18620	18758	25332	25332					0.11903175545535305
KLIQELKTA	9	Unmodified	_KLIQELKTA_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-MATCH	A375_MHC_IP_R1	1		2	522.326599	1042.63865	-0.49416	-0.00025811	-0.57152	-0.00029852	-1.0657	-0.00055663	522.3264358039924	33.452	0.25612	33.452	33.291	33.547	0	0.098165	-3.1623E-05	NaN	9.544	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1399500			25871	2362	18620	18758							0.11903175545535305
KLIQEWNSV	9	Unmodified	_KLIQEWNSV_					0	0	0		nc|ENSG00000159921|Q9Y223-2|GNE;nc|ENSG00000159921|Q9Y223-5|GNE;nc|ENSG00000159921|Q9Y223-3|GNE;ENSG00000159921|ENST00000642385|GNE	nc|ENSG00000159921|Q9Y223-2|GNE	nc|ENSG00000159921|Q9Y223-2|GNE	MULTI-SECPEP	A375_MHC_IP_R2	2	559.2059326171875	2	558.806031	1115.59751	-0.65941	-0.00036848	-0.066512	-3.7167E-05	-0.72592	-0.00040565	558.8060944843402	63.093	0.60787	63.835	63.534	64.142	0.74263					18	11	2	0	0	0	0.47206	1	23946	23946		28.495	14.588	1	1651000			25872	14706	18621	18759	25333	25333					0.04433414506047484
KLIQFLISL	9	Unmodified	_KLIQFLISL_					0	0	0		ENST00000532338.5_1_8:145534845-145537990:+|nuORF;ENSG00000185122|ENST00000528838|HSF1;ENST00000527328.5_1_8:145534845-145537878:+|nuORF;nc|ENSG00000185122|Q00613-2|HSF1	ENST00000532338.5_1_8:145534845-145537990:+|nuORF	ENST00000532338.5_1_8:145534845-145537990:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	537.70751953125	2	537.84971	1073.68487	-0.76608	-0.00041204	0.02083	1.1203E-05	-0.74525	-0.00040083	537.8501201927435	90.872	0.45547	91.606	91.261	91.717	0.7345					11	8	2	0	0	0	0.57806	1	34516	34516		15.248	0	1	900710			25873	8642	18622	18760	25334	25334					0.1509724044763061
KLIQKQLRLRN	11	Unmodified	_KLIQKQLRLRN_					0	0	0			REV__ENSG00000160190|ENST00000352133|SLC37A1	REV__ENSG00000160190|ENST00000352133|SLC37A1	MSMS	A375_MHC_IP_R2	2	470.6423645019531	3	470.640294	1408.89905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.606	1	29.305	28.805	29.805	0.69872								0	0	0	0.16339	1	9899	9899		0.36667	0	1		+		25874	20148	18623	18761	25335	25335					0.21095760596222135
KLIQLQFEV	9	Unmodified	_KLIQLQFEV_					0	0	0		ENST00000393179.8_1_12:89885842-89919131:-|nuORF	ENST00000393179.8_1_12:89885842-89919131:-|nuORF	ENST00000393179.8_1_12:89885842-89919131:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	559.7345581054688	2	559.334424	1116.6543	-0.44051	-0.00024639	0.034228	1.9145E-05	-0.40629	-0.00022725	559.3342904661157	101.4	0.65712	101.4	101.09	101.75	0					22	12	3	0	0	0	0.070665	1	37281	37281		78.728	36.888	1	2756100			25875	11437	18624	18762	25336	25336					0.10063462062544204
KLIQLQFEV	9	Unmodified	_KLIQLQFEV_					0	0	0		ENST00000393179.8_1_12:89885842-89919131:-|nuORF	ENST00000393179.8_1_12:89885842-89919131:-|nuORF	ENST00000393179.8_1_12:89885842-89919131:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	559.7343139648438	2	559.334424	1116.6543	-0.48418	-0.00027082	0.14238	7.9638E-05	-0.3418	-0.00019118	559.3342574598045	100.41	0.5117	101.17	100.88	101.39	0.76278					19	9	3	0	0	0	0.053904	1	38092	38092		85.272	21.036	1	1320100			25876	11437	18624	18762	25337	25337					0.10063462062544204
KLIRKKKRY	9	Unmodified	_KLIRKKKRY_					0	0	0			REV__nc|ENSG00000079263|Q13342-3|SP140	REV__nc|ENSG00000079263|Q13342-3|SP140	MULTI-SECPEP	A375_MHC_IP_R1	1	617.2433471679688	2	616.919324	1231.8241	-0.54174	-0.00033421	-1.2355	-0.00076222	-1.7773	-0.0010964	617.4196599955984	84.353	0.25238	84.353	84.241	84.494	0					5	4	2	0	0	0	0.8175	1	30886	30886		0.6015	0.6015	1	1392200	+		25877	16726	18625	18763	25338	25338					0.2174562285565571
KLIRLRQTL	9	Unmodified	_KLIRLRQTL_					0	0	0		KCNJ9|p.S212L|1|0.33|ENSG00000162728|chr1:160084665-160084665|C/T|missense_variant	KCNJ9|p.S212L|1|0.33|ENSG00000162728|chr1:160084665-160084665|C/T|missense_variant	KCNJ9|p.S212L|1|0.33|ENSG00000162728|chr1:160084665-160084665|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	571.28369140625	2	570.882407	1139.75026	-0.2131	-0.00012165	1.6336	0.00093258	1.4205	0.00081093	570.8836760977938	89.267	0.85831	89.999	89.635	90.493	0.7318					30	16	3	0	0	0	0.58271	1	33981	33981		26.884	2.8631	1	2910600			25878	14199	18626	18764	25339	25339					0.1859765469332615
KLISDINKA	9	Unmodified	_KLISDINKA_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R1	1	501.2049560546875	2	501.303124	1000.5917	-0.48354	-0.0002424	0.23416	0.00011739	-0.24937	-0.00012501	501.30321600989953	27.548	0.95787	27.548	27.28	28.238	0					34	18	4	0	0	0	0.011256	1	8347	8347		110.79	61.238	1	18404000			25879	3298	18627	18765	25340	25340					0.09142315994358796
KLISDINKA	9	Unmodified	_KLISDINKA_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R2	2	501.70269775390625	2	501.303124	1000.5917	-0.83133	-0.00041675	0.5029	0.00025211	-0.32843	-0.00016464	501.30334970078115	26.82	0.96979	27.48	27.161	28.131	0.65992					32	18	3	0	0	0	0.010931	1	9107	9107		125.04	61.077	1	15316000			25880	3298	18627	18765	25341	25341					0.09142315994358796
KLISELQKL	9	Unmodified	_KLISELQKL_					0	0	0		ENSG00000080345|ENST00000444746|RIF1;nc|ENSG00000080345|Q5UIP0-2|RIF1;ENST00000498041.1_1_2:152276743-152279974:+|nuORF	ENSG00000080345|ENST00000444746|RIF1	ENSG00000080345|ENST00000444746|RIF1	MULTI-SECPEP	A375_MHC_IP_R1	1	535.6665649414062	2	536.342249	1070.66995	-0.69515	-0.00037284	0.20749	0.00011129	-0.48765	-0.00026155	536.3423228015602	57.489	0.81315	57.489	57.211	58.024	0					39	15	4	0	0	0	0.011465	1	20644	20644		114.5	18.13	1	27094000			25881	1712	18628	18766	25342	25342					0.1374374857962266
KLISELQKL	9	Unmodified	_KLISELQKL_					0	0	0		ENSG00000080345|ENST00000444746|RIF1;nc|ENSG00000080345|Q5UIP0-2|RIF1;ENST00000498041.1_1_2:152276743-152279974:+|nuORF	ENSG00000080345|ENST00000444746|RIF1	ENSG00000080345|ENST00000444746|RIF1	MULTI-MSMS	A375_MHC_IP_R2	2	358.2970275878906	3	357.897258	1070.66995	-0.52741	-0.00018876	0.2103	7.5266E-05	-0.31711	-0.00011349	357.8972688568094	56.376	0.66233	57.126	56.847	57.51	0.75015					25	12	3	0	0	0	0.058226	1	21286	21286		61.09	9.6747	1	12025000			25882	1712	18628	18766	25343	25343					0.1374374857962266
KLISELQKL	9	Unmodified	_KLISELQKL_					0	0	0		ENSG00000080345|ENST00000444746|RIF1;nc|ENSG00000080345|Q5UIP0-2|RIF1;ENST00000498041.1_1_2:152276743-152279974:+|nuORF	ENSG00000080345|ENST00000444746|RIF1	ENSG00000080345|ENST00000444746|RIF1	MULTI-SECPEP	A375_MHC_IP_R2	2	536.7417602539062	2	536.342249	1070.66995	-1.1874	-0.00063686	0.3911	0.00020976	-0.79631	-0.0004271	536.342389422503	56.376	0.66233	57.126	56.847	57.51	0.75015					31	12	3	0	0	0	0.0078253	1	21269	21269		155.95	26.181	1	31781000			25883	1712	18628	18766	25344	25344					0.1374374857962266
KLISKFDKL	9	Unmodified	_KLISKFDKL_					0	0	0		ARID1A|p.R1879Sfs*22|1|0.55|ENSG00000117713|chr1:26779531-26779532|-/T|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A	ARID1A|p.R1879Sfs*22|1|0.55|ENSG00000117713|chr1:26779531-26779532|-/T|frameshift_variant	ARID1A|p.R1879Sfs*22|1|0.55|ENSG00000117713|chr1:26779531-26779532|-/T|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	364.61065673828125	3	364.56562	1090.67503	-0.17052	-6.2165E-05	-0.017909	-6.5289E-06	-0.18843	-6.8694E-05	364.89988769519266	37.788	0.35691	38.563	38.33	38.687	0.77451					15	6	3	0	0	0	0.4782	1	13841	13841		20.871	2.498	1	2276200			25884	177	18629	18767	25345	25345					0.13332052442228814
KLISSYYNV	9	Unmodified	_KLISSYYNV_					0	0	0		nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-4|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-2|TMEM209	nc|ENSG00000146842|Q96SK2-2|TMEM209	MULTI-SECPEP	A375_MHC_IP_R1	1	544.1953125	2	543.795132	1085.57571	-0.56453	-0.00030699	0.6741	0.00036657	0.10958	5.9588E-05	543.7951900017877	60.12	0.81495	60.12	59.854	60.669	0					32	15	3	0	0	0	0.10535	1	21643	21643		92.653	48.795	1	6607400			25885	5642	18630	18768	25346	25346					0.036346097574551095
KLISSYYNV	9	Unmodified	_KLISSYYNV_					0	0	0		nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-4|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-2|TMEM209	nc|ENSG00000146842|Q96SK2-2|TMEM209	MULTI-SECPEP	A375_MHC_IP_R2	2	544.1947631835938	2	543.795132	1085.57571	-1.2212	-0.00066411	0.73171	0.0003979	-0.48954	-0.00026621	543.7951606022094	59.304	0.65713	60.051	59.793	60.45	0.74714					39	12	5	0	0	0	0.063333	1	22436	22436		92.653	92.653	1	6943300			25886	5642	18630	18768	25347	25347					0.036346097574551095
KLITPPPLRV	10	Unmodified	_KLITPPPLRV_					0	0	0			REV__ENSG00000148606|ENST00000372371|POLR3A	REV__ENSG00000148606|ENST00000372371|POLR3A	MULTI-MSMS	A375_MHC_IP_R1	1	378.9815673828125	3	378.585015	1132.73321	0.89195	0.00033768	-2.5284	-0.00095721	-1.6364	-0.00061953	378.58480879664074	44.859	0.86142	44.859	44.523	45.384	0					45	16	4	0	0	0	0.054029	1	15771	15771		74.772	15.719	1	25740000	+		25887	19639	18631	18769	25348	25348					0.17215734087494639
KLKDFDIL	8	Unmodified	_KLKDFDIL_					0	0	0			REV__ENSG00000115306|ENST00000356805|SPTBN1;REV__nc|ENSG00000115306|Q01082-2|SPTBN1;REV__nc|ENSG00000070182|P11277-3|SPTB	REV__ENSG00000115306|ENST00000356805|SPTBN1	MSMS	A375_MHC_IP_R2	2	496.3708801269531	2	496.294768	990.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.69	1	141.72	141.22	142.22	0.03772								0	0	0	0.16876	1	55409	55409		2.5775	0	1		+		25888	17871;27186;16568	18632	18770	25349	25349					0.0793181510841805
KLKDIEHAL	9	Unmodified	_KLKDIEHAL_					0	0	0		ENST00000473604.2_1_9:132580793-132585603:-|nuORF;ENSG00000136827|ENST00000351698|TOR1A	ENST00000473604.2_1_9:132580793-132585603:-|nuORF	ENST00000473604.2_1_9:132580793-132585603:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	356.6132507324219	3	356.213358	1065.61824	0.0017147	6.108E-07	-0.22732	-8.0974E-05	-0.2256	-8.0363E-05	356.21323709141063	34.089	0.50584	34.089	33.848	34.353	0					21	9	3	0	0	0	0.11715	1	11205	11205		47.594	30.152	1	5243300			25889	4824	18633	18771	25350	25350					0.08806004885695984
KLKDIEHAL	9	Unmodified	_KLKDIEHAL_					0	0	0		ENST00000473604.2_1_9:132580793-132585603:-|nuORF;ENSG00000136827|ENST00000351698|TOR1A	ENST00000473604.2_1_9:132580793-132585603:-|nuORF	ENST00000473604.2_1_9:132580793-132585603:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	356.6129150390625	3	356.213358	1065.61824	-0.3435	-0.00012236	0.12471	4.4422E-05	-0.21879	-7.7937E-05	356.21322118001217	33.056	0.45869	33.806	33.583	34.041	0.75048					22	8	4	0	0	0	0.095851	1	11821	11821		51.415	28.64	1	5485300			25890	4824	18633	18771	25351	25351					0.08806004885695984
KLKDIRNAW	9	Unmodified	_KLKDIRNAW_					0	0	0		ENSG00000053372|ENST00000330263|MRTO4	ENSG00000053372|ENST00000330263|MRTO4	ENSG00000053372|ENST00000330263|MRTO4	MULTI-MSMS	A375_MHC_IP_R1	1	382.292724609375	3	381.892619	1142.65603	0.10816	4.1304E-05	0.11837	4.5205E-05	0.22653	8.6509E-05	381.8926073002793	32.509	0.65628	32.509	32.282	32.938	0					42	12	5	0	0	0	0.032066	1	10492	10492		73.196	41.561	1	76498000			25891	1247	18634	18772	25352	25352					0.0904051587115191
KLKDIRNAW	9	Unmodified	_KLKDIRNAW_					0	0	0		ENSG00000053372|ENST00000330263|MRTO4	ENSG00000053372|ENST00000330263|MRTO4	ENSG00000053372|ENST00000330263|MRTO4	MULTI-SECPEP	A375_MHC_IP_R1	1	572.7352294921875	2	572.33529	1142.65603	-0.47673	-0.00027285	0.036481	2.0879E-05	-0.44025	-0.00025197	572.3353604354692	32.51	0.25129	32.51	32.383	32.634	0					10	4	3	0	0	0	0.53098	1	10545	10545		27.223	4.5652	1	3041900			25892	1247	18634	18772	25353	25353					0.0904051587115191
KLKDIRNAW	9	Unmodified	_KLKDIRNAW_					0	0	0		ENSG00000053372|ENST00000330263|MRTO4	ENSG00000053372|ENST00000330263|MRTO4	ENSG00000053372|ENST00000330263|MRTO4	MULTI-MSMS	A375_MHC_IP_R2	2	382.29248046875	3	381.892619	1142.65603	-0.092233	-3.5223E-05	0.29903	0.0001142	0.2068	7.8974E-05	381.89268758447577	31.616	0.71125	32.353	32.095	32.806	0.73691					39	13	4	0	0	0	0.058226	1	11156	11156		61.09	36.208	1	69120000			25893	1247	18634	18772	25354	25354					0.0904051587115191
KLKDPANFQY	10	Unmodified	_KLKDPANFQY_					0	0	0		nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-3|NQO1;ENST00000569118.1_1_16:69751908-69760342:-|nuORF	nc|ENSG00000181019|P15559-2|NQO1	nc|ENSG00000181019|P15559-2|NQO1	MULTI-MSMS	A375_MHC_IP_R1	1	408.60369873046875	3	408.552151	1222.63462	0.05701	2.3291E-05	0.22411	9.1563E-05	0.28112	0.00011485	408.55222015328906	39.223	0.60876	39.223	38.933	39.541	0					29	11	4	0	0	0	0.65106	1	13325	13325		17.049	8.893	1	9556700			25894	8329	18635	18773	25355	25355					0.032210860517807305
KLKDPANFQY	10	Unmodified	_KLKDPANFQY_					0	0	0		nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-3|NQO1;ENST00000569118.1_1_16:69751908-69760342:-|nuORF	nc|ENSG00000181019|P15559-2|NQO1	nc|ENSG00000181019|P15559-2|NQO1	MULTI-SECPEP	A375_MHC_IP_R1	1	612.7237548828125	2	612.324588	1222.63462	-0.1629	-9.9747E-05	-0.96629	-0.00059169	-1.1292	-0.00069143	612.3238537944943	39.258	0.35789	39.258	39.033	39.391	0					17	6	3	0	0	0	0.025827	1	13390	13390		110.79	83.164	1	5991300			25895	8329	18635	18773	25356	25356					0.032210860517807305
KLKDPANFQY	10	Unmodified	_KLKDPANFQY_					0	0	0		nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-3|NQO1;ENST00000569118.1_1_16:69751908-69760342:-|nuORF	nc|ENSG00000181019|P15559-2|NQO1	nc|ENSG00000181019|P15559-2|NQO1	MULTI-MSMS	A375_MHC_IP_R2	2	408.6039123535156	3	408.552151	1222.63462	-0.36418	-0.00014879	-0.05341	-2.1821E-05	-0.41759	-0.00017061	408.5521342201279	38.431	0.55796	39.205	38.895	39.453	0.77451					18	10	2	0	0	0	0.65106	2	14100	14100;14114		17.049	6.898	1	8878000			25896	8329	18635	18773	25357;25358	25357					0.032210860517807305
KLKDPANFQY	10	Unmodified	_KLKDPANFQY_					0	0	0		nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-3|NQO1;ENST00000569118.1_1_16:69751908-69760342:-|nuORF	nc|ENSG00000181019|P15559-2|NQO1	nc|ENSG00000181019|P15559-2|NQO1	MULTI-SECPEP	A375_MHC_IP_R2	2	612.72412109375	2	612.324588	1222.63462	-0.91566	-0.00056068	-0.63097	-0.00038636	-1.5466	-0.00094704	612.3240348691207	38.45	0.45531	39.225	38.946	39.401	0.77451					15	8	2	0	0	0	0.13368	1	14162	14162		81.915	31.06	1	5256100			25897	8329	18635	18773	25359	25359					0.032210860517807305
KLKDPTLRFRL	11	Unmodified	_KLKDPTLRFRL_					0	0	0		ENSG00000162231|ENST00000294172|NXF1;ENST00000533440.1_1_11:62562405-62563999:-|nuORF	ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	MULTI-SECPEP	A375_MHC_IP_R1	1	463.1974182128906	3	462.957511	1385.8507	-0.53836	-0.00024924	-0.56319	-0.00026073	-1.1015	-0.00050997	462.957354235945	26.054	0.40527	26.054	25.866	26.271	0					10	7	2	0	0	0	0.9907	1	7682	7682		9.2438	1.7667	1	5550400			25898	6514	18636	18774	25360	25360					0.17321266956309955
KLKDTLHNLL	10	Unmodified	_KLKDTLHNLL_					0	0	0			REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	MULTI-SECPEP	A375_MHC_IP_R1	1	398.2872619628906	3	398.911679	1193.71321	-0.37402	-0.0001492	0.51741	0.0002064	0.14339	5.7198E-05	398.9119028562552	32.624	1.1188	32.624	31.819	32.938	0					39	21	2	0	0	0	0.88038	1	10540	10540		12.856	1.957	1	1735300	+		25899	17885	18637	18775	25361	25361					0.12409938356881867
KLKEIRVVK	9	Unmodified	_KLKEIRVVK_					0	0	0		ENST00000467702.2_1_3:10370500-10373681:-|nuORF	ENST00000467702.2_1_3:10370500-10373681:-|nuORF	ENST00000467702.2_1_3:10370500-10373681:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	556.9597778320312	2	556.879333	1111.74411	-1.0633	-0.00059211	-0.002443	-1.3604E-06	-1.0657	-0.00059348	556.8793346182874	19.456	0.85997	20.059	19.733	20.593	0.60308					26	16	2	0	0	0	0.69317	1	5890	5890		3.9444	0	1	1428400			25900	12284	18638	18776	25362	25362					0.19271136461793503
KLKESLKSF	9	Unmodified	_KLKESLKSF_					0	0	0		tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	MSMS	A375_MHC_IP_R1	1	360.61322021484375	3	360.553492	1078.63865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.276	1	40.276	39.776	40.776	0								0	0	0	0.15486	1	13826	13826		9.544	0.79857	1				25901	29903	18639	18777	25363	25363					0.1024717554550989
KLKKKKAKLVP	11	Unmodified	_KLKKKKAKLVP_					0	0	0			REV__nc|ENSG00000111358|Q13889-2|GTF2H3	REV__nc|ENSG00000111358|Q13889-2|GTF2H3	MSMS	A375_MHC_IP_R1	1	640.9893188476562	2	640.960658	1279.90676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.881	1	77.881	77.381	78.381	0								0	0	0	0.16353	1	28423	28423		0.35063	0.35063	1		+		25902	17668	18640	18778	25364	25364					0.2780051986376293
KLKKKKAKLVP	11	Unmodified	_KLKKKKAKLVP_					0	0	0			REV__nc|ENSG00000111358|Q13889-2|GTF2H3	REV__nc|ENSG00000111358|Q13889-2|GTF2H3	MSMS	A375_MHC_IP_R1	1	640.9485473632812	2	640.960658	1279.90676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.877	1	79.877	79.377	80.377	0								0	0	0	0.16353	1	29159	29159		0.35063	0.35063	1		+		25903	17668	18640	18778	25365	25365					0.2780051986376293
KLKKKKAKLVP	11	Unmodified	_KLKKKKAKLVP_					0	0	0			REV__nc|ENSG00000111358|Q13889-2|GTF2H3	REV__nc|ENSG00000111358|Q13889-2|GTF2H3	MSMS	A375_MHC_IP_R2	2	640.9891357421875	2	640.960658	1279.90676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.14	1	77.883	77.383	78.383	0.74293								0	0	0	0.16353	1	29293	29293		0.35063	0.35063	1		+		25904	17668	18640	18778	25366	25366					0.2780051986376293
KLKKLALKIK	10	Unmodified	_KLKKLALKIK_					0	0	0			REV__APBB1IP|p.E168K|2|0.41|ENSG00000077420|chr10:26503245-26503245|G/A|missense_variant	REV__APBB1IP|p.E168K|2|0.41|ENSG00000077420|chr10:26503245-26503245|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	592.0765380859375	2	591.936651	1181.85875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.537	1	72.271	71.771	72.771	0.73421								0	0	0	0.15642	1	27139	27139		0	0	1		+		25905	15421	18641	18779	25367	25367					0.27509445943701394
KLKKLKPRRRR	11	Unmodified	_KLKKLKPRRRR_					0	0	0			REV__ENSG00000136982|ENST00000313655|DSCC1	REV__ENSG00000136982|ENST00000313655|DSCC1	MSMS	A375_MHC_IP_R1	1	740.0137329101562	2	740.015153	1478.01575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.082	1	94.082	93.582	94.582	0								0	0	0	0.1636	1	34580	34580		0	0	1		+		25906	18980	18642	18780	25368	25368					0.29586543606592386
KLKKLVFKRV	10	Unmodified	_KLKKLVFKRV_					0	0	0			REV__ENST00000587994.5_1_18:47322196-47323846:-|nuORF	REV__ENST00000587994.5_1_18:47322196-47323846:-|nuORF	MSMS	A375_MHC_IP_R2	2	420.6275634765625	3	420.295576	1257.8649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.03	1	129.27	128.77	129.77	0.23946								0	0	0	0.15629	1	50700	50700		0.13989	0.13989	1		+		25907	26408	18643	18781	25369	25369					0.24627964175238048
KLKKPEAVRW	10	Unmodified	_KLKKPEAVRW_					0	0	0		ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	MULTI-SECPEP	A375_MHC_IP_R1	1	419.3274841308594	3	418.927552	1253.76083	0.0030617	1.2826E-06	-0.31418	-0.00013162	-0.31112	-0.00013034	418.92747138333544	24.507	0.40182	24.507	24.347	24.749	0					18	7	4	0	0	0	0.93245	1	6992	6992		11.631	5.0079	1	5840400			25908	6949	18644	18782	25370	25370					0.14409637347716853
KLKKPEAVRW	10	Unmodified	_KLKKPEAVRW_					0	0	0		ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	MULTI-MSMS	A375_MHC_IP_R2	2	418.6506652832031	3	418.927552	1253.76083	-0.33797	-0.00014158	0.24626	0.00010317	-0.091702	-3.8417E-05	418.927602129065	23.74	0.30479	24.37	24.18	24.485	0.63014					12	5	3	0	0	0	0.44533	1	7679	7679		31.462	19.234	1	4522600			25909	6949	18644	18782	25371	25371					0.14409637347716853
KLKKRDRY	8	Unmodified	_KLKKRDRY_					0	0	0			REV__CADM4|p.E164K|1|0.39|ENSG00000105767|chr19:43626793-43626793|C/T|missense_variant	REV__CADM4|p.E164K|1|0.39|ENSG00000105767|chr19:43626793-43626793|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	369.5771179199219	3	369.564614	1105.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.767	1	23.767	23.267	24.267	0								0	0	0	0.16876	1	6596	6596		8.1555	3.966	1		+		25910	15562	18645	18783	25372	25372					0.12340222108082344
KLKKVKKKRR	10	Unmodified	_KLKKVKKKRR_					0	0	0		ENSG00000128908|ENST00000648947|INO80	ENSG00000128908|ENST00000648947|INO80	ENSG00000128908|ENST00000648947|INO80	MSMS	A375_MHC_IP_R2	2	656.44775390625	2	656.474798	1310.93504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.409	1	92.144	91.644	92.644	0.7345								0	0	0	0.15629	1	34772	34772		0.40072	0	1				25911	4168	18646	18784	25373	25373					0.29201262563719865
KLKLKIMYKYA	11	Unmodified	_KLKLKIMYKYA_					0	0	0			REV__nc|ENSG00000156042|Q5T0N1-2|CFAP70	REV__nc|ENSG00000156042|Q5T0N1-2|CFAP70	MULTI-MSMS	A375_MHC_IP_R2	2	700.330322265625	2	699.930709	1397.84686	-0.51657	-0.00036156	-0.018155	-1.2707E-05	-0.53472	-0.00037427	699.930486554839	149.2	2.4803	149.22	147.53	150.01	0.018707					294	106	4	0	0	0	0.73902	1	58109	58109		0.30703	0	1	2721100	+		25912	19959	18647	18785	25374	25374					0.16385461138247592
KLKLPWTSR	9	Unmodified	_KLKLPWTSR_					0	0	0		ENST00000553142.5_1_12:58020529-58021701:-|nuORF;nc|ENSG00000135454|Q00973-2|B4GALNT1;ENSG00000135454|ENST00000341156|B4GALNT1	ENST00000553142.5_1_12:58020529-58021701:-|nuORF	ENST00000553142.5_1_12:58020529-58021701:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	565.1949462890625	2	564.848033	1127.68151	-0.53641	-0.00030299	-0.18334	-0.00010356	-0.71976	-0.00040655	564.8481776642383	97.95	0.40819	98.709	98.435	98.844	0.75922					12	7	2	0	0	0	0.75164	1	37121	37121		13.906	11.603	1	714840			25913	4687	18648	18786	25375	25375					0.12277990393590699
KLKNLRIKL	9	Unmodified	_KLKNLRIKL_					0	0	0		nc|ENSG00000114487|Q86VD1-2|MORC1;ENSG00000114487|ENST00000232603|MORC1;MORC1|p.D915N|2|0.16|ENSG00000114487|chr3:108963470-108963470|C/T|missense_variant	nc|ENSG00000114487|Q86VD1-2|MORC1	nc|ENSG00000114487|Q86VD1-2|MORC1	MSMS	A375_MHC_IP_R2	2	375.9265441894531	3	375.932526	1124.77575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.807	1	43.58	43.08	44.08	0.7724								0	0	0	0.15486	1	15933	15933		1.0715	0	1				25914	3224	18649	18787	25376	25376					0.21835129215719462
KLKNVIHKI	9	Unmodified	_KLKNVIHKI_					0	0	0		ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	MULTI-MSMS	A375_MHC_IP_R1	1	365.3133850097656	3	364.913243	1091.7179	0.41602	0.00015181	-0.18711	-6.828E-05	0.2289	8.353E-05	364.91317171280224	21.161	0.81471	21.161	20.69	21.505	0					23	15	2	0	0	0	0.22528	1	5481	5481		33.445	7.4242	1	1428300			25915	2677	18650	18788	25377	25377					0.17570867290305614
KLKPFIDREWW	11	Unmodified	_KLKPFIDREWW_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.3761291503906	3	506.613633	1516.81907	-0.42622	-0.00021593	0.18044	9.1414E-05	-0.24578	-0.00012452	506.6137339286172	80.009	0.35818	80.009	79.778	80.136	0					11	6	2	0	0	0	0.99482	1	29250	29250		9.2438	8.7378	1	1410500			25916	1519	18651	18789	25378	25378					0.08133274202350549
KLKPGDLVGV	10	Unmodified	_KLKPGDLVGV_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-SECPEP	A375_MHC_IP_R1	1	513.6923828125	2	513.321317	1024.62808	-0.40331	-0.00020703	0.12585	6.4602E-05	-0.27746	-0.00014243	513.3213483100468	47.616	0.4536	47.616	47.416	47.87	0					11	8	2	0	0	0	0.73795	1	16774	16774		32.037	18.131	1	2664400			25917	7003	18652	18790	25379	25379					0.11675192891084407
KLKPGDLVGV	10	Unmodified	_KLKPGDLVGV_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-SECPEP	A375_MHC_IP_R2	2	513.6918334960938	2	513.321317	1024.62808	-0.59726	-0.00030659	0.092984	4.7731E-05	-0.50427	-0.00025885	513.3212752459681	46.64	0.5094	47.404	47.106	47.616	0.76402					18	9	3	0	0	0	0.68963	1	17472	17472		22.658	12.584	1	2501400			25918	7003	18652	18790	25380	25380					0.11675192891084407
KLKPGDLVVSG	11	Unmodified	_KLKPGDLVVSG_					0	0	0		ENST00000531653.5_1_11:47445967-47447800:-|nuORF	ENST00000531653.5_1_11:47445967-47447800:-|nuORF	ENST00000531653.5_1_11:47445967-47447800:-|nuORF	MSMS	A375_MHC_IP_R2	2	371.6268615722656	3	371.560646	1111.66011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.036	1	58.785	58.285	59.285	0.74894								0	0	0	0.16309	1	21952	21952		2.6312	1.4379	1				25919	13174	18653	18791	25381	25381					0.108745605742115
KLKPLLEKW	9	Unmodified	_KLKPLLEKW_					0	0	0		nc|ENSG00000137709|Q9UKI9-3|POU2F3;ENSG00000137709|ENST00000543440|POU2F3;nc|ENSG00000137709|Q9UKI9-2|POU2F3;ENST00000533620.5_1_11:120169092-120189098:+|nuORF;ENST00000559648.1_1_1:167358914-167365774:+|nuORF;nc|ENSG00000143190|P14859-4|POU2F1;nc|ENSG00000143190|P14859-2|POU2F1;nc|ENSG00000143190|P14859|POU2F1;nc|ENSG00000143190|P14859-3|POU2F1;nc|ENSG00000143190|P14859-5|POU2F1;nc|ENSG00000028277|P09086|POU2F2;ENSG00000028277|ENST00000692977|POU2F2;nc|ENSG00000028277|P09086-5|POU2F2;nc|ENSG00000028277|P09086-2|POU2F2;nc|ENSG00000028277|P09086-3|POU2F2;nc|ENSG00000028277|P09086-4|POU2F2;ENSG00000143190|ENST00000367866|POU2F1	nc|ENSG00000137709|Q9UKI9-3|POU2F3	nc|ENSG00000137709|Q9UKI9-3|POU2F3	MULTI-MSMS	A375_MHC_IP_R1	1	385.9815673828125	3	385.581382	1153.72232	0.45326	0.00017477	-0.026779	-1.0326E-05	0.42648	0.00016444	385.58128592209	47.897	0.60505	47.897	47.618	48.223	0					30	11	4	0	0	0	0.0844	1	16850	16850		53.47	21.834	1	8798900			25920	4907	18654	18792	25382	25382					0.1516033171321851
KLKPLLEKW	9	Unmodified	_KLKPLLEKW_					0	0	0		nc|ENSG00000137709|Q9UKI9-3|POU2F3;ENSG00000137709|ENST00000543440|POU2F3;nc|ENSG00000137709|Q9UKI9-2|POU2F3;ENST00000533620.5_1_11:120169092-120189098:+|nuORF;ENST00000559648.1_1_1:167358914-167365774:+|nuORF;nc|ENSG00000143190|P14859-4|POU2F1;nc|ENSG00000143190|P14859-2|POU2F1;nc|ENSG00000143190|P14859|POU2F1;nc|ENSG00000143190|P14859-3|POU2F1;nc|ENSG00000143190|P14859-5|POU2F1;nc|ENSG00000028277|P09086|POU2F2;ENSG00000028277|ENST00000692977|POU2F2;nc|ENSG00000028277|P09086-5|POU2F2;nc|ENSG00000028277|P09086-2|POU2F2;nc|ENSG00000028277|P09086-3|POU2F2;nc|ENSG00000028277|P09086-4|POU2F2;ENSG00000143190|ENST00000367866|POU2F1	nc|ENSG00000137709|Q9UKI9-3|POU2F3	nc|ENSG00000137709|Q9UKI9-3|POU2F3	MULTI-MSMS	A375_MHC_IP_R2	2	385.9813537597656	3	385.581382	1153.72232	0.045556	1.7565E-05	0.19928	7.6838E-05	0.24483	9.4403E-05	385.58140393274175	46.724	0.55986	47.486	47.206	47.766	0.76128					27	10	4	0	0	0	0.10518	1	17491	17491		49.742	21.508	1	7441100			25921	4907	18654	18792	25383	25383					0.1516033171321851
KLKPLLNKW	9	Unmodified	_KLKPLLNKW_					0	0	0		ENSG00000185668|ENST00000373012|POU3F1;ENSG00000198914|ENST00000361360|POU3F3	ENSG00000185668|ENST00000373012|POU3F1;ENSG00000198914|ENST00000361360|POU3F3	ENSG00000185668|ENST00000373012|POU3F1	MULTI-MSMS	A375_MHC_IP_R1	1	380.6014709472656	3	380.581493	1138.72265	0.52224	0.00019875	-0.42079	-0.00016014	0.10145	3.8609E-05	380.5813621187295	42.67	0.50601	42.67	42.436	42.942	0					21	9	3	0	0	0	0.2415	2	14761	14761;14798		34.932	29.149	1	5001700			25922	8682;9368	18655	18793	25384;25385	25384					0.1588375143307985
KLKPLLNKW	9	Unmodified	_KLKPLLNKW_					0	0	0		ENSG00000185668|ENST00000373012|POU3F1;ENSG00000198914|ENST00000361360|POU3F3	ENSG00000185668|ENST00000373012|POU3F1;ENSG00000198914|ENST00000361360|POU3F3	ENSG00000185668|ENST00000373012|POU3F1	MULTI-MSMS	A375_MHC_IP_R2	2	380.9814453125	3	380.581493	1138.72265	-0.1297	-4.9362E-05	0.1115	4.2433E-05	-0.018207	-6.9292E-06	380.5815166294587	41.5	0.60998	42.274	41.997	42.607	0.77451					23	11	3	0	0	0	0.020087	1	15391	15391		83.429	54.934	1	5234700			25923	8682;9368	18655	18793	25386	25386					0.1588375143307985
KLKPVATRF	9	Unmodified	_KLKPVATRF_					0	0	0		nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-2|GON4L	nc|ENSG00000116580|Q3T8J9-3|GON4L	nc|ENSG00000116580|Q3T8J9-3|GON4L	MULTI-MSMS	A375_MHC_IP_R2	2	353.9496765136719	3	353.89396	1058.66005	-0.49864	-0.00017646	0.053266	1.885E-05	-0.44537	-0.00015761	354.2282814188318	24.188	0.40651	24.831	24.653	25.06	0.64368					10	7	2	0	0	0	0.71784	1	7914	7914		5.4027	5.4027	1	4019300			25924	3407	18656	18794	25387	25387					0.13306605364869029
KLKRHLAL	8	Unmodified	_KLKRHLAL_					0	0	0		ENSG00000186867|ENST00000394427|QRFPR	ENSG00000186867|ENST00000394427|QRFPR	ENSG00000186867|ENST00000394427|QRFPR	MULTI-MSMS	A375_MHC_IP_R1	1	978.5552978515625	1	978.657096	977.649819	0.0057276	5.6054E-06	-0.050988	-4.99E-05	-0.045261	-4.4295E-05	978.6570915454093	24.394	0.96293	24.394	23.94	24.903	0					28	18	2	0	0	0	0.77861	1	7153	7153		0	0	1	8464400			25925	8785	18657	18795	25388	25388					0.160100424302982
KLKSLPII	8	Unmodified	_KLKSLPII_					0	0	0			REV__DAAM2|p.L684P|1|0.35|ENSG00000146122|chr6:39887583-39887583|T/C|missense_variant	REV__DAAM2|p.L684P|1|0.35|ENSG00000146122|chr6:39887583-39887583|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	456.7178039550781	2	456.318046	910.621539	-0.4913	-0.00022419	-0.22754	-0.00010383	-0.71883	-0.00032802	456.31790144714773	61.956	0.55576	62.699	62.421	62.976	0.74263					16	10	2	0	0	0	0.84294	1	23509	23509		30.637	0	1	1742000	+		25926	15964	18658	18796	25389	25389					0.16265299730378047
KLKTKALEPPA	11	Unmodified	_KLKTKALEPPA_					0	0	0		nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40;ENST00000484528.1_1_2:234465455-234475343:-|nuORF;ENST00000427947.7_1_2:234462980-234475343:-|nuORF	nc|ENSG00000085982|Q9NVE5|USP40	nc|ENSG00000085982|Q9NVE5|USP40	MSMS	A375_MHC_IP_R1	1	399.6507263183594	3	399.251813	1194.73361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.275	1	16.275	15.775	16.775	0								0	0	0	0.16358	1	3785	3785		0.094841	0	1				25927	1823	18659	18797	25390	25390					0.14403109016689086
KLKTKPCTLY	10	Unmodified	_KLKTKPCTLY_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MSMS	A375_MHC_IP_R1	1	597.7340698242188	2	597.849384	1193.68422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.708	1	81.708	81.208	82.208	0								0	0	0	0.15407	1	29862	29862		7.609	3.2797	1		+		25928	21494	18660	18798	25391	25391					0.09512077736235369
KLLADTRKY	9	Unmodified	_KLLADTRKY_					0	0	0		nc|ENSG00000074603|Q6V1X1-2|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8;nc|ENSG00000074603|Q6V1X1-4|DPP8;nc|ENSG00000074603|Q6V1X1-5|DPP8;nc|ENSG00000074603|Q6V1X1-6|DPP8;ENST00000560194.1_1_15:65804381-65804891:-|nuORF	nc|ENSG00000074603|Q6V1X1-2|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	MULTI-SECPEP	A375_MHC_IP_R1	1	370.2890319824219	3	369.888874	1106.64479	0.59452	0.00021991	-0.061835	-2.2872E-05	0.53269	0.00019704	369.8887447380773	21.782	0.4066	21.782	21.555	21.962	0					11	7	2	0	0	0	0.71071	1	5796	5796		7.0371	5.1307	1	2052500			25929	1586	18661	18799	25392	25392					0.09573693777042536
KLLAQLIAV	9	Unmodified	_KLLAQLIAV_					0	0	0			REV__nc|ENSG00000142185|O94759-3|TRPM2	REV__nc|ENSG00000142185|O94759-3|TRPM2	MULTI-SECPEP	A375_MHC_IP_R1	1	485.2286376953125	2	484.828778	967.643003	-0.24096	-0.00011682	0.028682	1.3906E-05	-0.21228	-0.00010292	484.828722530564	47.442	0.40514	47.442	47.263	47.668	0					13	7	2	0	0	0	0.3213	1	16706	16706		46.021	0	1	3849900	+		25930	19298	18662	18800	25393	25393					0.1578868475909303
KLLAQLIAV	9	Unmodified	_KLLAQLIAV_					0	0	0			REV__nc|ENSG00000142185|O94759-3|TRPM2	REV__nc|ENSG00000142185|O94759-3|TRPM2	MULTI-SECPEP	A375_MHC_IP_R2	2	485.2286682128906	2	484.828778	967.643003	-0.4711	-0.0002284	0.066054	3.2025E-05	-0.40504	-0.00019638	484.8287795550284	46.5	0.40744	47.265	47.008	47.416	0.76519					13	7	3	0	0	0	0.096726	1	17402	17402		71.134	3.2954	1	3274800	+		25931	19298	18662	18800	25394	25394					0.1578868475909303
KLLAVIHEL	9	Unmodified	_KLLAVIHEL_					0	0	0		ENSG00000197275|ENST00000336148|RAD54B	ENSG00000197275|ENST00000336148|RAD54B	ENSG00000197275|ENST00000336148|RAD54B	MULTI-SECPEP	A375_MHC_IP_R2	2	518.731201171875	2	518.331685	1034.64882	-0.65406	-0.00033902	-0.081389	-4.2187E-05	-0.73545	-0.00038121	518.3315829559259	70.363	0.4586	71.098	70.844	71.302	0.73421					15	8	3	0	0	0	0.5212	1	26673	26673		26.268	8.1218	1	1814000			25932	9139	18663	18801	25395	25395					0.13287783270743603
KLLDERLVT	9	Unmodified	_KLLDERLVT_					0	0	0		nc|ENSG00000176390|Q8IUI8-2|CRLF3;ENSG00000176390|ENST00000324238|CRLF3	nc|ENSG00000176390|Q8IUI8-2|CRLF3	nc|ENSG00000176390|Q8IUI8-2|CRLF3	MULTI-SECPEP	A375_MHC_IP_R1	1	544.22900390625	2	543.829506	1085.64446	-0.54605	-0.00029696	0.035724	1.9428E-05	-0.51033	-0.00027753	543.8293765750129	59.777	0.4068	59.777	59.599	60.006	0					12	7	2	0	0	0	0.67471	1	21527	21527		22.658	0	1	2121500			25933	8017	18664	18802	25396	25396					0.10506274057183873
KLLDEVTYL	9	Unmodified	_KLLDEVTYL_					0	0	0		ENST00000492633.5_1_1:60370173-60378128:-|nuORF;ENST00000466095.5_1_1:60366713-60392418:-|nuORF;ENST00000469406.5_1_1:60370173-60392418:-|nuORF;ENSG00000134716|ENST00000371204|CYP2J2	ENST00000492633.5_1_1:60370173-60378128:-|nuORF	ENST00000492633.5_1_1:60370173-60378128:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	547.7107543945312	2	547.310615	1092.60668	-0.59064	-0.00032327	-0.090846	-4.9721E-05	-0.68149	-0.00037299	547.3105162496662	94.166	0.7087	94.166	93.789	94.497	0					23	13	2	0	0	0	0.13208	1	34555	34555		57.722	21.595	1	6380800			25934	4599	18665	18803	25397	25397					0.0640776307170654
KLLDFSTRI	9	Unmodified	_KLLDFSTRI_					0	0	0		ENST00000521797.1_1_5:162884004-162884578:-|nuORF	ENST00000521797.1_1_5:162884004-162884578:-|nuORF	ENST00000521797.1_1_5:162884004-162884578:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	365.28533935546875	3	364.885241	1091.63389	0.20866	7.6135E-05	0.19982	7.291E-05	0.40847	0.00014904	364.88535724407933	73.494	0.5567	73.494	73.235	73.792	0					20	10	3	0	0	0	0.066859	1	26763	26763		46.022	11.801	1	2855800			25935	13013	18666	18804	25398	25398					0.09174291402746348
KLLDFSTRI	9	Unmodified	_KLLDFSTRI_					0	0	0		ENST00000521797.1_1_5:162884004-162884578:-|nuORF	ENST00000521797.1_1_5:162884004-162884578:-|nuORF	ENST00000521797.1_1_5:162884004-162884578:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6613159179688	2	546.824224	1091.63389	-0.54218	-0.00029648	0.15765	8.6208E-05	-0.38453	-0.00021027	546.8242349169296	73.462	0.608	73.462	73.184	73.792	0					33	11	4	0	0	0	0.40495	1	26803	26803		31.636	12.915	1	18566000			25936	13013	18666	18804	25399	25399					0.09174291402746348
KLLDFSTRI	9	Unmodified	_KLLDFSTRI_					0	0	0		ENST00000521797.1_1_5:162884004-162884578:-|nuORF	ENST00000521797.1_1_5:162884004-162884578:-|nuORF	ENST00000521797.1_1_5:162884004-162884578:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	365.2850646972656	3	364.885241	1091.63389	-0.11971	-4.368E-05	0.1688	6.1592E-05	0.049089	1.7912E-05	364.8852248150471	72.435	0.55726	73.17	72.922	73.48	0.7354					23	10	3	0	0	0	0.029064	1	27502	27502		61.09	5.8553	1	3488400			25937	13013	18666	18804	25400	25400					0.09174291402746348
KLLDFSTRI	9	Unmodified	_KLLDFSTRI_					0	0	0		ENST00000521797.1_1_5:162884004-162884578:-|nuORF	ENST00000521797.1_1_5:162884004-162884578:-|nuORF	ENST00000521797.1_1_5:162884004-162884578:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	546.6900024414062	2	546.824224	1091.63389	-0.92245	-0.00050442	-0.0099445	-5.4379E-06	-0.9324	-0.00050986	546.8241638302156	72.458	0.71102	73.194	72.973	73.684	0.73541					33	13	4	0	0	0	0.011418	1	27483	27483		103.82	11.17	1	16032000			25938	13013	18666	18804	25401	25401					0.09174291402746348
KLLDFVENN	9	Unmodified	_KLLDFVENN_					0	0	0		tr|U7SM68|U7SM68_FUSNUOutermembraneproteinTolCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02098PE=3SV=1	tr|U7SM68|U7SM68_FUSNUOutermembraneproteinTolCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02098PE=3SV=1	tr|U7SM68|U7SM68_FUSNUOutermembraneproteinTolCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02098PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	547.223876953125	2	546.290214	1090.56587	-0.8962	-0.00048958	0.076109	4.1578E-05	-0.82009	-0.00044801	546.2901977435647	72.569	1.2702	73.305	72.922	74.192	0.73541					80	24	5	0	0	0	0.27715	1	27473	27473		32.305	3.8186	1	116620000			25939	29520	18667	18805	25402	25402					0.02421421752092101
KLLDFVPKL	9	Unmodified	_KLLDFVPKL_					0	0	0		ANK1|p.E842K|1|0.3|ENSG00000029534|chr8:41699486-41699486|C/T|missense_variant	ANK1|p.E842K|1|0.3|ENSG00000029534|chr8:41699486-41699486|C/T|missense_variant	ANK1|p.E842K|1|0.3|ENSG00000029534|chr8:41699486-41699486|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1674194335938	2	536.841885	1071.66922	-0.80539	-0.00043236	-0.18507	-9.9352E-05	-0.99045	-0.00053172	536.8416578139182	79.731	0.66107	80.476	80.149	80.81	0.74474					26	12	3	0	0	0	0.40377	1	30268	30268		41.956	5.9114	1	11517000			25940	131	18668	18806	25403	25403					0.13624953930570882
KLLDIDVKK	9	Unmodified	_KLLDIDVKK_					0	0	0		tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	357.9538269042969	3	357.897258	1070.66995	0.078064	2.7939E-05	-0.51972	-0.00018601	-0.44166	-0.00015807	357.897128785938	20.054	1.7803	20.054	19.571	21.352	0					128	34	7	0	0	0	0.71784	1	4937	4937		5.4027	1.2132	1	1118900000			25941	29458	18669	18807	25404	25404					0.13743748579599924
KLLDIRSYL	9	Unmodified	_KLLDIRSYL_					0	0	0		ENSG00000103035|ENST00000219313|PSMD7;PSMD7|p.E213K|1|0.21|ENSG00000103035|chr16:74305395-74305395|G/A|missense_variant	ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	MULTI-MSMS	A375_MHC_IP_R1	1	374.6292724609375	3	374.229008	1119.66519	0.52825	0.00019769	0.055106	2.0622E-05	0.58336	0.00021831	374.22896883450477	92.388	0.60886	92.388	92.059	92.668	0					25	11	3	0	0	0	0.14368	1	33919	33919		42.835	21.036	1	7562700			25942	2412	18670	18808	25405	25405					0.11014864436833705
KLLDIRSYL	9	Unmodified	_KLLDIRSYL_					0	0	0		ENSG00000103035|ENST00000219313|PSMD7;PSMD7|p.E213K|1|0.21|ENSG00000103035|chr16:74305395-74305395|G/A|missense_variant	ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	MULTI-SECPEP	A375_MHC_IP_R1	1	561.23974609375	2	560.839874	1119.66519	-0.28303	-0.00015873	0.10687	5.9939E-05	-0.17616	-9.8795E-05	560.8399097565251	92.388	0.55836	92.388	92.059	92.617	0					27	10	3	0	0	0	0.0575	1	33917	33917		67.838	0	1	12878000			25943	2412	18670	18808	25406	25406					0.11014864436833705
KLLDIRSYL	9	Unmodified	_KLLDIRSYL_					0	0	0		ENSG00000103035|ENST00000219313|PSMD7;PSMD7|p.E213K|1|0.21|ENSG00000103035|chr16:74305395-74305395|G/A|missense_variant	ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	MULTI-SECPEP	A375_MHC_IP_R2	2	561.2401123046875	2	560.839874	1119.66519	-0.53046	-0.0002975	0.03842	2.1547E-05	-0.49204	-0.00027595	560.8398661111545	91.412	0.76079	92.147	91.919	92.68	0.7345					30	14	3	0	0	0	0.025037	1	34774	34774		80.676	0	1	15529000			25944	2412	18670	18808	25407	25407					0.11014864436833705
KLLDKISSV	9	Unmodified	_KLLDKISSV_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;SPG11|p.P2108L|1|0.29|ENSG00000104133|chr15:44572703-44572703|G/A|missense_variant;ENST00000561268.5_1_15:44859731-44865880:-|nuORF	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-SECPEP	A375_MHC_IP_R1	1	502.21331787109375	2	501.813325	1001.6121	-0.069088	-3.4669E-05	-0.1609	-8.0741E-05	-0.22999	-0.00011541	501.81326042522153	49.662	0.40597	49.662	49.439	49.845	0					15	7	3	0	0	0	0.13093	1	17563	17563		62.869	17.129	1	2119000			25945	2486	18671	18809	25408	25408					0.11135486654188753
KLLDKISSV	9	Unmodified	_KLLDKISSV_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;SPG11|p.P2108L|1|0.29|ENSG00000104133|chr15:44572703-44572703|G/A|missense_variant;ENST00000561268.5_1_15:44859731-44865880:-|nuORF	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-SECPEP	A375_MHC_IP_R2	2	502.2131652832031	2	501.813325	1001.6121	-0.65475	-0.00032856	-0.28832	-0.00014468	-0.94307	-0.00047324	501.8132096349628	48.651	0.35639	49.408	49.18	49.536	0.75737					12	6	2	0	0	0	0.28318	1	18263	18263		41.347	15.326	1	2276900			25946	2486	18671	18809	25409	25409					0.11135486654188753
KLLDLMPRL	9	Unmodified	_KLLDLMPRL_					0	0	0		ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-SECPEP	A375_MHC_IP_R1	1	550.2387084960938	2	549.83882	1097.66309	-0.51112	-0.00028104	-0.22507	-0.00012375	-0.73619	-0.00040479	549.8391947164947	100.67	0.45572	100.67	100.43	100.89	0					19	8	3	0	0	0	0.48018	1	37019	37019		49.527	29.074	1	2655900			25947	5794	18672	18810	25410	25410					0.1181611242739109
KLLDLYRSL	9	Unmodified	_KLLDLYRSL_					0	0	0			REV__ENSG00000138792|ENST00000265162|ENPEP	REV__ENSG00000138792|ENST00000265162|ENPEP	MULTI-MSMS	A375_MHC_IP_R2	2	561.3969116210938	2	560.839874	1119.66519	-0.53046	-0.0002975	0.03842	2.1547E-05	-0.49204	-0.00027595	560.8398661111545	91.412	0.76079	92.147	91.919	92.68	0.7345					30	14	3	0	0	0	0.23949	1	34839	34839		43.982	0	1	15529000	+		25948	19123	18673	18811	25411	25411					0.11014864436833705
KLLDMELEM	9	Unmodified	_KLLDMELEM_					0	0	0		ENST00000558514.1_1_15:80460394-80460694:+|nuORF;nc|ENSG00000103876|P16930-2|FAH;ENSG00000103876|ENST00000561421|FAH	ENST00000558514.1_1_15:80460394-80460694:+|nuORF	ENST00000558514.1_1_15:80460394-80460694:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	561.23974609375	2	561.282686	1120.55082	-0.35682	-0.00020028	1.5592	0.00087516	1.2024	0.00067488	561.2831580032106	92.132	0.45623	92.132	91.956	92.413	0					9	6	2	0	0	0	0.65246	1	33917	33917		15.847	6.4641	1	1876100			25949	2472	18674	18812	25412	25412					-0.0046352943177225825
KLLDVVHPA	9	Unmodified	_KLLDVVHPA_					0	0	0		nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;ENST00000480489.5_1_2:73461506-73470269:+|nuORF;ENST00000461290.5_1_2:73461506-73471178:+|nuORF	nc|ENSG00000135624|Q99832-3|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	MULTI-SECPEP	A375_MHC_IP_R1	1	496.7001037597656	2	496.300384	990.586216	0.034529	1.7137E-05	-0.48775	-0.00024207	-0.45322	-0.00022493	496.3001147130937	48.6	0.55647	48.6	48.325	48.882	0					22	10	3	0	0	0	0.056023	1	17139	17139		66.457	44.92	1	13228000			25950	4699	18675	18813	25413	25413					0.0905463720255284
KLLDVVHPA	9	Unmodified	_KLLDVVHPA_					0	0	0		nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;ENST00000480489.5_1_2:73461506-73470269:+|nuORF;ENST00000461290.5_1_2:73461506-73471178:+|nuORF	nc|ENSG00000135624|Q99832-3|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	MULTI-SECPEP	A375_MHC_IP_R2	2	496.7001647949219	2	496.300384	990.586216	-0.32849	-0.00016303	-0.29945	-0.00014862	-0.62794	-0.00031165	496.30015432499954	47.663	0.60887	48.424	48.174	48.783	0.76128					22	11	3	0	0	0	0.16676	1	17872	17872		58.679	35.943	1	9535500			25951	4699	18675	18813	25414	25414					0.0905463720255284
KLLEAISSL	9	Unmodified	_KLLEAISSL_					0	0	0		nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A	nc|ENSG00000156697|Q9BVJ6-3|UTP14A	nc|ENSG00000156697|Q9BVJ6-3|UTP14A	MULTI-MSMS	A375_MHC_IP_R1	1	487.699951171875	2	487.30005	972.585547	-0.37378	-0.00018214	-0.50046	-0.00024387	-0.87424	-0.00042602	487.2997163602002	87.053	0.45605	87.053	86.781	87.237	0					18	8	3	0	0	0	0.012843	1	31926	31926		92.653	7.3813	1	2794500			25952	6206	18676	18814	25415	25415					0.09815797762848888
KLLEAQSHF	9	Unmodified	_KLLEAQSHF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1922607421875	2	536.792924	1071.57129	-1.0775	-0.00057841	0.074183	3.9821E-05	-1.0033	-0.00053859	536.7928852795518	35.626	0.45563	36.39	36.183	36.638	0.76338					15	8	2	0	0	0	0.12938	1	12949	12949		69.338	35.893	1	2627000			25953	9183	18677	18815	25416	25416					0.03837145334568959
KLLEASKW	8	Unmodified	_KLLEASKW_					0	0	0			REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MSMS	A375_MHC_IP_R2	2	487.69964599609375	2	487.78711	973.559667	-0.43136	-0.00021041	-0.68679	-0.00033501	-1.1181	-0.00054542	487.78699069743965	85.221	1.8879	85.958	85.472	87.36	0.73602					69	36	4	0	0	0	0.70783	1	32708	32708		32.305	7.6316	1	15088000	+		25954	22295	18678	18816	25417	25417					0.0718294831123103
KLLEEDVKRW	10	Unmodified	_KLLEEDVKRW_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-SECPEP	A375_MHC_IP_R2	2	439.66607666015625	3	439.250472	1314.72959	-0.44152	-0.00019394	1.0673	0.00046882	0.6258	0.00027488	439.5851126117083	40.591	0.20403	41.366	41.234	41.438	0.77451					6	3	2	0	0	0	0.87697	1	15005	15005		23.016	19.696	1	611140			25955	1199	18679	18817	25418	25418					0.08481019522992028
KLLEEQGIFL	10	Unmodified	_KLLEEQGIFL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.R3252W|1|0.37|ENSG00000127481|chr1:19122895-19122895|G/A|missense_variant	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	A375_MHC_IP_R1	1	595.7444458007812	2	595.344989	1188.67542	-0.37775	-0.00022489	0.11234	6.6879E-05	-0.26542	-0.00015801	595.3449627681308	100.21	1.1134	100.21	99.774	100.89	0					49	21	4	0	0	0	0.028212	1	36808	36808		93.166	10.637	1	17327000			25956	4093	18680	18818	25419	25419					0.08863427371420585
KLLEGEETRL	10	Unmodified	_KLLEGEETRL_					0	0	0		ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	MULTI-MSMS	A375_MHC_IP_R2	2	396.9592590332031	3	396.559194	1186.65575	-0.48691	-0.00019309	0.10609	4.2071E-05	-0.38082	-0.00015102	396.55926273108855	38.551	0.3037	39.325	39.149	39.453	0.77451					12	5	3	0	0	0	0.48176	1	14234	14234		29.291	10.952	1	2423800			25957	10031	18681	18819	25420	25420					0.06989051360665144
KLLEGEETRL	10	Unmodified	_KLLEGEETRL_					0	0	0		ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	MULTI-MATCH	A375_MHC_IP_R1	1		3	396.559194	1186.65575	-0.14624	-5.7992E-05	0.19923	7.9007E-05	0.052993	2.1015E-05	396.5591633034849	39.485	0.45615	39.485	39.187	39.643	0	0.079653	5.6134E-05	NaN	29.291	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2256900			25958	10031	18681	18819							0.06989051360665144
KLLEILRKY	9	Unmodified	_KLLEILRKY_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-2|DICER1	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MULTI-MSMS	A375_MHC_IP_R1	1	392.9886169433594	3	392.588536	1174.74378	0.16409	6.4422E-05	0.10914	4.2846E-05	0.27323	0.00010727	392.58851041902847	57.084	0.3559	57.084	56.855	57.211	0					10	6	2	0	0	0	0.4782	1	20500	20500		20.871	2.498	1	2024900			25959	2211	18682	18820	25421	25421					0.1633971674195891
KLLEKLYKV	9	Unmodified	_KLLEKLYKV_					0	0	0		ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	MULTI-SECPEP	A375_MHC_IP_R1	1	567.7679443359375	2	567.368267	1132.72198	0.10751	6.0998E-05	-0.058255	-3.3052E-05	0.049255	2.7946E-05	567.8699660856765	45.157	0.40563	45.157	44.928	45.334	0					11	7	2	0	0	0	0.59927	1	15801	15801		29.437	21.282	1	2578500			25960	5014	18683	18821	25422	25422					0.16092911993359849
KLLEKLYKV	9	Unmodified	_KLLEKLYKV_					0	0	0		ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	MULTI-MSMS	A375_MHC_IP_R2	2	378.9813232421875	3	378.58127	1132.72198	0.28031	0.00010612	-0.279	-0.00010563	0.0013104	4.9608E-07	378.5811229160249	44.074	0.55754	44.843	44.58	45.138	0.7691					30	10	4	0	0	0	0.0097279	1	16411	16411		111.31	46.382	1	18521000			25961	5014	18683	18821	25423	25423					0.16092911993359849
KLLEKLYKV	9	Unmodified	_KLLEKLYKV_					0	0	0		ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	MULTI-SECPEP	A375_MHC_IP_R2	2	567.1485595703125	2	567.368267	1132.72198	-0.20711	-0.00011751	-0.59469	-0.00033741	-0.80181	-0.00045492	567.3677884770201	44.088	0.50542	44.858	44.53	45.035	0.7691					12	9	2	0	0	0	0.775	1	16396	16396		4.1895	1.1943	1	1897300			25962	5014	18683	18821	25424	25424					0.16092911993359849
KLLEKSDLHSV	11	Unmodified	_KLLEKSDLHSV_					0	0	0		nc|ENSG00000085978|Q676U5-2|ATG16L1;ENSG00000085978|ENST00000392017|ATG16L1;ENST00000474148.5_1_2:234160473-234181699:+|nuORF;nc|ENSG00000085978|Q676U5-4|ATG16L1;nc|ENSG00000085978|Q676U5-5|ATG16L1;nc|ENSG00000085978|Q676U5-3|ATG16L1;ENST00000479942.5_1_2:234160473-234198706:+|nuORF;ENST00000485623.5_1_2:234160473-234172712:+|nuORF	nc|ENSG00000085978|Q676U5-2|ATG16L1	nc|ENSG00000085978|Q676U5-2|ATG16L1	MULTI-SECPEP	A375_MHC_IP_R1	1	422.93890380859375	3	423.578477	1267.7136	-0.030407	-1.288E-05	-1.2489	-0.000529	-1.2793	-0.00054188	423.91279312011426	28.719	0.20347	28.719	28.592	28.795	0					6	3	2	0	0	0	0.98892	1	8893	8893		7.846	0	1	1200400			25963	1822	18684	18822	25425	25425					0.09045313286083001
KLLEKVRKV	9	Unmodified	_KLLEKVRKV_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	A375_MHC_IP_R1	1	372.60760498046875	3	371.588648	1111.74411	0.61257	0.00022762	-0.44229	-0.00016435	0.17027	6.3272E-05	371.58844716702214	21.843	1.2188	21.843	21.098	22.317	0					77	23	4	0	0	0	0.62591	2	5681	5596;5681		13.615	6.5131	1	20565000			25964	8085	18685	18823	25426;25427	25427					0.19271136461793503
KLLEKVRKV	9	Unmodified	_KLLEKVRKV_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	A375_MHC_IP_R1	1	557.2786865234375	2	556.879333	1111.74411	-0.25669	-0.00014295	-0.37906	-0.00021109	-0.63575	-0.00035403	556.8790966212009	21.793	0.71182	21.793	21.301	22.013	0					20	13	2	0	0	0	0.62707	1	5828	5828		18.373	8.2992	1	1461200			25965	8085	18685	18823	25428	25428					0.19271136461793503
KLLEKVRKV	9	Unmodified	_KLLEKVRKV_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-SECPEP	A375_MHC_IP_R1	1	371.98895263671875	3	371.588648	1111.74411	0.65465	0.00024326	-0.12644	-4.6983E-05	0.52821	0.00019628	371.58855893099803	22.75	0.90993	22.75	22.368	23.278	0					49	17	4	0	0	0	0.61758	1	6092	6092		25.997	10.749	1	32809000			25966	8085	18685	18823	25429	25429					0.19271136461793503
KLLEKVRKV	9	Unmodified	_KLLEKVRKV_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-SECPEP	A375_MHC_IP_R1	1	557.2787475585938	2	556.879333	1111.74411	-0.18595	-0.00010355	-0.13422	-7.4743E-05	-0.32017	-0.00017829	556.8792238118267	22.73	0.50391	22.73	22.52	23.024	0					11	9	2	0	0	0	0.44554	1	6157	6157		34.222	18.073	1	1717500			25967	8085	18685	18823	25430	25430					0.19271136461793503
KLLEKVRKV	9	Unmodified	_KLLEKVRKV_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	A375_MHC_IP_R2	2	372.60736083984375	3	371.588648	1111.74411	0.14246	5.2937E-05	-0.21062	-7.8266E-05	-0.068164	-2.5329E-05	371.5885259308563	19.382	1.4675	19.986	19.533	21.001	0.60308					96	28	4	0	0	0	0.70411	1	6100	6100		6.6304	3.8952	1	23900000			25968	8085	18685	18823	25431	25431					0.19271136461793503
KLLEKVRKV	9	Unmodified	_KLLEKVRKV_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	A375_MHC_IP_R2	2	372.2665710449219	3	371.588648	1111.74411	0.090747	3.3721E-05	-0.11925	-4.4313E-05	-0.028507	-1.0593E-05	371.5885656589686	22.408	0.51069	23.027	22.795	23.306	0.61932					21	9	4	0	0	0	0.72552	1	7092	7092		4.7159	2.6299	1	4951700			25969	8085	18685	18823	25432	25432					0.19271136461793503
KLLEPVLLL	9	Unmodified	_KLLEPVLLL_					0	0	0		ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-SECPEP	A375_MHC_IP_R2	2	519.7514038085938	2	519.352086	1036.68962	-0.68898	-0.00035783	0.056807	2.9503E-05	-0.63218	-0.00032832	519.3520154105661	121.54	0.96374	121.98	121.67	122.64	0.44488					57	18	4	0	0	0	0.11711	1	46432	46432		60.074	9.2189	1	398850000			25970	2573	18686	18824	25433	25433					0.1727412459038078
KLLEPVPVSV	10	Unmodified	_KLLEPVPVSV_					0	0	0		ENSG00000196704|ENST00000359904|AMZ2;ENST00000578175.5_1_17:66246915-66252971:+|nuORF;ENST00000585050.5_1_17:66245218-66252971:+|nuORF;AMZ2|p.D182Vfs*8|1|0.18|ENSG00000196704|chr17:68251137-68251149|ACTCGTGGAATTT/-|frameshift_variant	ENSG00000196704|ENST00000359904|AMZ2	ENSG00000196704|ENST00000359904|AMZ2	MULTI-SECPEP	A375_MHC_IP_R1	1	541.23681640625	2	540.8368	1079.65905	-0.52813	-0.00028563	0.29414	0.00015908	-0.23399	-0.00012655	540.83705350636	81.881	0.5563	81.881	81.657	82.214	0					23	10	3	0	0	0	0.78231	1	29918	29918		35.612	10.621	1	4628000			25971	9078	18687	18825	25434	25434					0.1224034620531711
KLLEPVPVSV	10	Unmodified	_KLLEPVPVSV_					0	0	0		ENSG00000196704|ENST00000359904|AMZ2;ENST00000578175.5_1_17:66246915-66252971:+|nuORF;ENST00000585050.5_1_17:66245218-66252971:+|nuORF;AMZ2|p.D182Vfs*8|1|0.18|ENSG00000196704|chr17:68251137-68251149|ACTCGTGGAATTT/-|frameshift_variant	ENSG00000196704|ENST00000359904|AMZ2	ENSG00000196704|ENST00000359904|AMZ2	MULTI-SECPEP	A375_MHC_IP_R2	2	541.1505126953125	2	540.8368	1079.65905	-0.93784	-0.00050722	-0.18576	-0.00010047	-1.1236	-0.00060768	540.8366556585449	80.954	0.61198	81.699	81.468	82.08	0.74474					23	11	3	0	0	0	0.74768	1	30726	30726		27.088	3.0678	1	5514600			25972	9078	18687	18825	25435	25435					0.1224034620531711
KLLERVSAI	9	Unmodified	_KLLERVSAI_					0	0	0		nc|ENSG00000188986|Q8WX92|NELFB;ENSG00000188986|ENST00000343053|NELFB	nc|ENSG00000188986|Q8WX92|NELFB	nc|ENSG00000188986|Q8WX92|NELFB	MULTI-SECPEP	A375_MHC_IP_R1	1	515.2261962890625	2	514.826766	1027.63898	-0.58653	-0.00030196	-0.0097365	-5.0126E-06	-0.59626	-0.00030697	514.8267154454178	47.208	0.36276	47.208	47.003	47.366	0					11	6	2	0	0	0	0.50484	1	16618	16618		34.932	3.6637	1	2557200			25973	8949	18688	18826	25436	25436					0.12626595265373908
KLLESDYFRYY	11	Unmodified	_KLLESDYFRYY_					0	0	0		ENSG00000197930|ENST00000395686|ERO1A	ENSG00000197930|ENST00000395686|ERO1A	ENSG00000197930|ENST00000395686|ERO1A	MSMS	A375_MHC_IP_R2	2	499.45953369140625	3	499.58552	1495.73473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.489	1	61.234	60.734	61.734	0.74503								0	0	0	0.16302	1	22906	22906		1.2148	0	1				25974	9208	18689	18827	25437	25437					0.006692785949553581
KLLEVNGVAL	10	Unmodified	_KLLEVNGVAL_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-MSMS	A375_MHC_IP_R1	1	529.3234252929688	2	528.326599	1054.63865	-0.73503	-0.00038834	-0.062912	-3.3238E-05	-0.79794	-0.00042157	528.326498590201	86.099	0.80923	86.099	85.87	86.679	0					34	15	3	0	0	0	0.48194	1	31591	31591		33.445	8.0456	1	6419300			25975	8324	18690	18828	25438	25438					0.11351175545519254
KLLEVNGVAL	10	Unmodified	_KLLEVNGVAL_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-SECPEP	A375_MHC_IP_R2	2	528.7261962890625	2	528.326599	1054.63865	-0.3787	-0.00020008	-0.13362	-7.0593E-05	-0.51231	-0.00027067	528.3264729796637	85.171	1.071	85.907	85.574	86.645	0.73601					33	20	3	0	0	0	0.10694	1	32385	32385		74.2	21.931	1	7149300			25976	8324	18690	18828	25439	25439					0.11351175545519254
KLLEVQPQV	9	Unmodified	_KLLEVQPQV_					0	0	0		ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1	ENSG00000115504|ENST00000431489|EHBP1	ENSG00000115504|ENST00000431489|EHBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	527.7186279296875	2	527.318774	1052.623	-0.49181	-0.00025934	0.657	0.00034645	0.16518	8.7104E-05	527.3190725795316	60.031	0.71212	60.031	59.752	60.464	0					42	13	4	0	0	0	0.036758	1	21566	21566		99.755	21.027	1	41837000			25977	3314	18691	18829	25440	25440					0.09878889028482263
KLLEVQPQV	9	Unmodified	_KLLEVQPQV_					0	0	0		ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1	ENSG00000115504|ENST00000431489|EHBP1	ENSG00000115504|ENST00000431489|EHBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6689453125	2	527.318774	1052.623	-0.88641	-0.00046742	-0.38818	-0.00020469	-1.2746	-0.00067212	527.3185193507069	59.124	1.0631	59.871	59.59	60.653	0.74714					51	20	4	0	0	0	0.011405	1	22383	22383		122.18	33.225	1	42422000			25978	3314	18691	18829	25441	25441					0.09878889028482263
KLLGELHTL	9	Unmodified	_KLLGELHTL_					0	0	0		nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-3|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	MULTI-SECPEP	A375_MHC_IP_R1	1	512.66552734375	2	512.313492	1022.61243	-0.54529	-0.00027936	0.14382	7.3682E-05	-0.40147	-0.00020568	512.3135042851663	58.462	0.65916	58.462	58.228	58.887	0					33	12	4	0	0	0	9.5323E-05	1	21008	21008		149.91	78.78	1	15468000			25979	1678	18692	18830	25442	25442					0.10202906374036047
KLLGELHTL	9	Unmodified	_KLLGELHTL_					0	0	0		nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-3|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	MULTI-SECPEP	A375_MHC_IP_R2	2	512.71337890625	2	512.313492	1022.61243	-1.1116	-0.0005695	0.046116	2.3626E-05	-1.0655	-0.00054587	512.313473432393	57.346	0.66205	58.095	57.865	58.528	0.74894					32	12	4	0	0	0	0.011236	1	21653	21653		129.77	58.639	1	17138000			25980	1678	18692	18830	25443	25443					0.10202906374036047
KLLGKKLPR	9	Unmodified	_KLLGKKLPR_					0	0	0		SLC28A2|p.T132P|1|0.16|ENSG00000137860|chr15:45263192-45263192|A/C|missense_variant	SLC28A2|p.T132P|1|0.16|ENSG00000137860|chr15:45263192-45263192|A/C|missense_variant	SLC28A2|p.T132P|1|0.16|ENSG00000137860|chr15:45263192-45263192|A/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	526.7127075195312	2	526.868769	1051.72298	-0.26762	-0.000141	-0.59542	-0.00031371	-0.86304	-0.00045471	526.8682181397144	138.69	0.15076	138.76	138.66	138.81	0.07341					4	2	2	0	0	0	0.81779	1	54385	54385		0.52476	0	1	402630			25981	29180	18693	18831	25444	25444					0.19919171152901072
KLLGKLPEL	9	Unmodified	_KLLGKLPEL_					0	0	0		nc|ENSG00000153234|P43354-2|NR4A2;ENSG00000153234|ENST00000339562|NR4A2	nc|ENSG00000153234|P43354-2|NR4A2	nc|ENSG00000153234|P43354-2|NR4A2	MULTI-SECPEP	A375_MHC_IP_R1	1	506.2337951660156	2	505.83406	1009.65357	-0.68406	-0.00034602	0.22998	0.00011633	-0.45408	-0.00022969	505.8340907787359	68.285	1.166	68.285	67.904	69.07	0					54	22	4	0	0	0	0.011191	1	24700	24700		100.09	24.33	1	35860000			25982	6019	18694	18832	25445	25445					0.14912667413500458
KLLGKLPEL	9	Unmodified	_KLLGKLPEL_					0	0	0		nc|ENSG00000153234|P43354-2|NR4A2;ENSG00000153234|ENST00000339562|NR4A2	nc|ENSG00000153234|P43354-2|NR4A2	nc|ENSG00000153234|P43354-2|NR4A2	MULTI-SECPEP	A375_MHC_IP_R2	2	506.2334289550781	2	505.83406	1009.65357	-0.74066	-0.00037465	-0.12635	-6.3914E-05	-0.86701	-0.00043857	505.8339408415855	67.235	1.1178	67.971	67.597	68.715	0.73631					52	21	4	0	0	0	0.038931	1	25403	25403		90.135	19.803	1	33982000			25983	6019	18694	18832	25446	25446					0.14912667413500458
KLLGKVETA	9	Unmodified	_KLLGKVETA_					0	0	0		ENSG00000129696|ENST00000431156|TTI2	ENSG00000129696|ENST00000431156|TTI2	ENSG00000129696|ENST00000431156|TTI2	MULTI-MSMS	A375_MHC_IP_R1	1	480.2000732421875	2	479.800217	957.585882	-0.74715	-0.00035848	0.18668	8.9568E-05	-0.56047	-0.00026892	479.80022727950995	26.246	0.60889	26.246	26.068	26.677	0					22	11	3	0	0	0	0.0042663	1	7798	7798		160.69	64.579	1	17099000			25984	4209	18695	18833	25447	25447					0.10539217482687491
KLLGKVETA	9	Unmodified	_KLLGKVETA_					0	0	0		ENSG00000129696|ENST00000431156|TTI2	ENSG00000129696|ENST00000431156|TTI2	ENSG00000129696|ENST00000431156|TTI2	MULTI-SECPEP	A375_MHC_IP_R2	2	480.19970703125	2	479.800217	957.585882	-1.0026	-0.00048103	0.31989	0.00015348	-0.68268	-0.00032755	479.8002937758894	25.412	0.55915	26.056	25.924	26.483	0.64368					16	10	3	0	0	0	0.010039	1	8498	8498		148.27	52.157	1	15454000			25985	4209	18695	18833	25448	25448					0.10539217482687491
KLLGKVTIA	9	Unmodified	_KLLGKVTIA_					0	0	0		nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000274997|ENST00000377459|H2AC12;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENST00000479986.1_1_6:27858584-27860837:-|nuORF	nc|ENSG00000288859|Q6FI13|H2AC18	nc|ENSG00000288859|Q6FI13|H2AC18	MULTI-SECPEP	A375_MHC_IP_R1	1	472.22076416015625	2	471.820953	941.627353	-0.16942	-7.9934E-05	-0.077981	-3.6793E-05	-0.2474	-0.00011673	471.8208529807618	43.017	0.45872	43.017	42.79	43.249	0					20	8	3	0	0	0	0.40377	1	14916	14916		41.956	14.327	1	10490000			25986	8566	18696	18834	25449	25449					0.15420398242042666
KLLGLVKLSLH	11	Unmodified	_KLLGLVKLSLH_					0	0	0		C2CD3|p.P902S|1|0.09|ENSG00000168014|chr11:74100553-74100553|G/A|missense_variant	C2CD3|p.P902S|1|0.09|ENSG00000168014|chr11:74100553-74100553|G/A|missense_variant	C2CD3|p.P902S|1|0.09|ENSG00000168014|chr11:74100553-74100553|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	610.7404174804688	2	610.908091	1219.80163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.3	1	88.033	87.533	88.533	0.733								0	0	0	0.16334	1	33200	33200		1.3295	0	1				25987	266	18697	18835	25450	25450					0.20051978667356707
KLLGNIKNV	9	Unmodified	_KLLGNIKNV_					0	0	0		ENSG00000100442|ENST00000396062|FKBP3	ENSG00000100442|ENST00000396062|FKBP3	ENSG00000100442|ENST00000396062|FKBP3	MULTI-SECPEP	A375_MHC_IP_R1	1	500.2213134765625	2	499.821484	997.628415	-0.595	-0.00029739	0.30216	0.00015103	-0.29284	-0.00014637	499.8215513344934	37.939	0.66148	37.939	37.71	38.371	0					28	12	4	0	0	0	3.9762E-14	1	12816	12816		181.33	106.9	1	33429000			25988	2180	18698	18836	25451	25451					0.1295061261093906
KLLGNIKNV	9	Unmodified	_KLLGNIKNV_					0	0	0		ENSG00000100442|ENST00000396062|FKBP3	ENSG00000100442|ENST00000396062|FKBP3	ENSG00000100442|ENST00000396062|FKBP3	MULTI-MSMS	A375_MHC_IP_R2	2	500.2744140625	2	499.821484	997.628415	-1.1694	-0.00058452	0.60759	0.00030369	-0.56186	-0.00028083	499.8217289120654	36.914	0.45668	37.685	37.41	37.867	0.7709					25	8	4	0	0	0	0.010037	1	13488	13488		96.285	47.939	1	19124000			25989	2180	18698	18836	25452	25452					0.1295061261093906
KLLGSMEQV	9	Unmodified	_KLLGSMEQV_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;nc|ENSG00000149262|Q96HW7-3|INTS4;ENST00000433818.6_1_11:77629258-77692594:-|nuORF;nc|ENSG00000149262|Q96HW7-2|INTS4;ENST00000587624.5_1_7:64601607-64646883:+|nuORF	ENSG00000149262|ENST00000534064|INTS4;ENST00000587624.5_1_7:64601607-64646883:+|nuORF	ENSG00000149262|ENST00000534064|INTS4	MULTI-SECPEP	A375_MHC_IP_R1	1	503.1759948730469	2	502.775885	1003.53722	-0.34786	-0.0001749	0.3626	0.00018231	0.014739	7.4103E-06	502.7760605117764	54.792	0.76178	54.792	54.263	55.025	0					16	14	2	0	0	0	0.16764	1	19585	19585		60.074	14.053	1	2374000			25990	5794;13748	18699	18837	25453	25453					0.0355898085130093
KLLGSPESTKL	11	Unmodified	_KLLGSPESTKL_					0	0	0		ENSG00000163933|ENST00000296292|RFT1;ENST00000471158.1_1_3:53137921-53154019:-|nuORF	ENSG00000163933|ENST00000296292|RFT1	ENSG00000163933|ENST00000296292|RFT1	MULTI-SECPEP	A375_MHC_IP_R1	1	392.29254150390625	3	391.567689	1171.68124	0.46359	0.00018153	-1.9	-0.00074397	-1.4364	-0.00056244	391.56769378166376	38.846	0.5077	38.846	38.577	39.085	0					14	9	2	0	0	0	0.97207	1	13170	13170		16.838	6.5231	1	2323000			25991	6747	18700	18838	25454	25454					0.10226525883081194
KLLILLSLV	9	Unmodified	_KLLILLSLV_					0	0	0		tr|U7T298|U7T298_FUSNUCitratetransporter-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00631PE=3SV=1	tr|U7T298|U7T298_FUSNUCitratetransporter-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00631PE=3SV=1	tr|U7T298|U7T298_FUSNUCitratetransporter-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00631PE=3SV=1	MSMS	A375_MHC_IP_R2	2	506.38275146484375	2	506.362453	1010.71035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.838	1	88.57	88.07	89.07	0.7318								0	0	0	0.15486	1	33416	33416		4.3292	0	1				25992	29923	18701	18839	25455	25455					0.20542714970042653
KLLISNFLERY	11	Unmodified	_KLLISNFLERY_					0	0	0			REV__nc|ENSG00000128512|Q8N1I0|DOCK4	REV__nc|ENSG00000128512|Q8N1I0|DOCK4	MULTI-SECPEP	A375_MHC_IP_R1	1	466.3380126953125	3	465.938005	1394.79219	-0.2309	-0.00010758	0.11869	5.53E-05	-0.11221	-5.2284E-05	465.9380329518705	93.865	0.65674	93.865	93.484	94.14	0					38	12	4	0	0	0	0.98303	1	34455	34455		10.527	7.6842	1	9406000	+		25993	27216	18702	18840	25456	25456					0.11058165591157376
KLLKDLPEL	9	Unmodified	_KLLKDLPEL_					0	0	0		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-SECPEP	A375_MHC_IP_R1	1	535.1636962890625	2	534.8368	1067.65905	-0.46092	-0.00024652	0.43737	0.00023392	-0.023556	-1.2599E-05	534.8369476798613	72.01	0.75758	72.01	71.665	72.423	0					22	14	2	0	0	0	0.14554	1	26143	26143		49.527	23.259	1	6142500			25994	5850	18703	18841	25457	25457					0.12792346205310423
KLLKDLPEL	9	Unmodified	_KLLKDLPEL_					0	0	0		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-SECPEP	A375_MHC_IP_R2	2	535.2362060546875	2	534.8368	1067.65905	-0.90114	-0.00048196	-0.18222	-9.7459E-05	-1.0834	-0.00057942	534.8366996344905	70.896	0.70906	71.631	71.352	72.061	0.73421					23	13	2	0	0	0	0.011031	1	26889	26889		117.76	49.922	1	6563200			25995	5850	18703	18841	25458	25458					0.12792346205310423
KLLKEKRRRW	10	Unmodified	_KLLKEKRRRW_					0	0	0			REV__nc|ENSG00000142459|Q96CN4|EVI5L	REV__nc|ENSG00000142459|Q96CN4|EVI5L	MSMS	A375_MHC_IP_R1	1	707.1548461914062	2	706.951687	1411.88882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.519	1	68.519	68.019	69.019	0								0	0	0	0.15628	1	24845	24845		0.45834	0.10771	1		+		25996	19309	18704	18842	25459	25459					0.199351976616299
KLLKIYSKQA	10	Unmodified	_KLLKIYSKQA_					0	0	0		nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1	nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1	nc|ENSG00000126391|Q9BZ67-2|FRMD8	MSMS	A375_MHC_IP_R2	2	596.4910278320312	2	596.376623	1190.73869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.684	1	92.418	91.918	92.918	0.7345								0	0	0	0.15541	1	34871	34871		3.2813	1.7994	1				25997	4040;14908	18705	18843	25460	25460					0.1509541287932734
KLLKKEIA	8	Unmodified	_KLLKKEIA_					0	0	0		BRD1|p.G784Afs*109|1|0.19|ENSG00000100425|chr22:49794042-49794042|C/-|frameshift_variant;nc|ENSG00000100425|O95696|BRD1;BRD1|p.V933Cfs*14|1|0.27|ENSG00000100425|chr22:49776091-49776091|C/-|frameshift_variant;ENSG00000100425|ENST00000404760|BRD1	BRD1|p.G784Afs*109|1|0.19|ENSG00000100425|chr22:49794042-49794042|C/-|frameshift_variant	BRD1|p.G784Afs*109|1|0.19|ENSG00000100425|chr22:49794042-49794042|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	472.14764404296875	2	471.820953	941.627353	-0.54272	-0.00025607	-0.098458	-4.6454E-05	-0.64118	-0.00030252	471.82089072394456	41.953	0.35762	42.728	42.504	42.862	0.77451					16	6	3	0	0	0	0.93777	1	15574	15574		17.113	0	1	6337300			25998	249	18706	18844	25461	25461					0.15420398242042666
KLLKLFQGV	9	Unmodified	_KLLKLFQGV_					0	0	0		nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	MULTI-SECPEP	A375_MHC_IP_R1	1	523.7416381835938	2	523.342052	1044.66955	-0.48925	-0.00025604	-0.43286	-0.00022654	-0.92211	-0.00048258	523.3416900539779	75.387	0.45343	75.387	75.16	75.614	0					14	8	2	0	0	0	0.24548	1	27480	27480		52.268	12.311	1	2182600			25999	9407	18707	18845	25462	25462					0.14900373650425536
KLLKLFQGV	9	Unmodified	_KLLKLFQGV_					0	0	0		nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	MULTI-SECPEP	A375_MHC_IP_R2	2	523.741455078125	2	523.342052	1044.66955	-0.55512	-0.00029052	-0.21862	-0.00011441	-0.77374	-0.00040493	523.3418052270102	74.094	0.50724	74.832	74.553	75.06	0.73752					21	9	3	0	0	0	0.3213	1	28148	28148		37.974	11.09	1	2724200			26000	9407	18707	18845	25463	25463					0.14900373650425536
KLLKQVDFL	9	Unmodified	_KLLKQVDFL_					0	0	0		ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MULTI-SECPEP	A375_MHC_IP_R1	1	552.7447509765625	2	552.344792	1102.67503	-0.35749	-0.00019746	0.12682	7.005E-05	-0.23067	-0.00012741	552.3448724367753	70.286	0.5114	70.286	70.034	70.545	0					15	9	2	0	0	0	0.062502	1	25516	25516		74.2	30.427	1	1756200			26001	8119	18708	18846	25464	25464					0.127800524422355
KLLKQVDFL	9	Unmodified	_KLLKQVDFL_					0	0	0		ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MULTI-SECPEP	A375_MHC_IP_R2	2	552.7444458007812	2	552.344792	1102.67503	-0.68042	-0.00037583	-0.71955	-0.00039744	-1.4	-0.00077327	552.3445399335121	69.242	0.40509	69.977	69.727	70.133	0.73475					17	7	3	0	0	0	0.10495	1	26253	26253		65.474	17.879	1	2125700			26002	8119	18708	18846	25465	25465					0.127800524422355
KLLKVIPLLHK	11	Unmodified	_KLLKVIPLLHK_					0	0	0		nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	MSMS	A375_MHC_IP_R1	1	651.4895629882812	2	651.455208	1300.89586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.82	1	114.82	114.32	115.32	0								0	0	0	0.1636	1	42107	42107		0	0	1				26003	8246	18709	18847	25466	25466					0.257451174894868
KLLLCNHKDLF	11	Unmodified	_KLLLCNHKDLF_					0	0	0		nc|ENSG00000102466|Q92915-2|FGF14	nc|ENSG00000102466|Q92915-2|FGF14	nc|ENSG00000102466|Q92915-2|FGF14	MSMS	A375_MHC_IP_R2	2	448.48590087890625	3	448.588319	1342.74313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.162	1	26.821	26.321	27.321	0.65992								0	0	0	0.16291	1	8817	8817		3.5927	0.52041	1				26004	14518	18710	18848	25467	25467					0.08546554030567677
KLLLKRKLLLK	11	Unmodified	_KLLLKRKLLLK_					0	0	0		ENST00000342992.10_3_2:179510673-179515519:-|nuORF	REV__ENST00000342992.10_3_2:179510673-179515519:-|nuORF	REV__ENST00000342992.10_3_2:179510673-179515519:-|nuORF	MSMS	A375_MHC_IP_R2	2	683.8276977539062	2	683.505232	1364.99591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.655	1	90.387	89.887	90.887	0.7318								0	0	0	0.1636	1	34115	34115		0	0	1				26005	23746	18711	18849	25468	25468					0.32801354823300244
KLLLLQPQK	9	Unmodified	_KLLLLQPQK_					0	0	0		ENST00000555988.1_2_14:75356010-75360059:+|nuORF	ENST00000555988.1_2_14:75356010-75360059:+|nuORF	ENST00000555988.1_2_14:75356010-75360059:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1081.75048828125	1	1080.71394	1079.70667	0.10849	0.00011724	2.232	0.0024122	2.3405	0.0025294	1081.7188690216929	124.44	0.25095	124.77	124.65	124.9	0.32969					6	4	2	0	0	0	0.75523	1	48060	48060		2.0598	0	1	18244000			26006	13436	18712	18850	25469	25469					0.17000045196164137
KLLLLTIRIIW	11	Unmodified	_KLLLLTIRIIW_					0	0	0			REV__ENST00000602984.1_1_1:98510427-98511708:-|nuORF	REV__ENST00000602984.1_1_1:98510427-98511708:-|nuORF	MSMS	A375_MHC_IP_R1	1	691.6287841796875	2	691.468315	1380.92208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.931	1	75.931	75.431	76.431	0								0	0	0	0.16353	1	27670	27670		0.35063	0	1		+		26007	26521	18713	18851	25470	25470					0.2468538666096265
KLLNKIYEA	9	Unmodified	_KLLNKIYEA_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	A375_MHC_IP_R1	1	546.67138671875	2	546.326599	1090.63865	-0.49845	-0.00027232	-0.14251	-7.7855E-05	-0.64096	-0.00035017	546.326427244039	40.787	0.35381	40.787	40.609	40.963	0					11	6	2	0	0	0	0.77229	1	14082	14082		8.9762	8.9762	1	2685700			26008	5295	18714	18852	25471	25471					0.09695175545516577
KLLNKIYEA	9	Unmodified	_KLLNKIYEA_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	A375_MHC_IP_R2	2	364.9296569824219	3	364.553492	1090.63865	-0.044951	-1.6387E-05	0.14882	5.4253E-05	0.10387	3.7866E-05	364.5534800248263	39.787	0.60895	40.562	40.118	40.727	0.77451					24	11	3	0	0	0	0.69884	1	14739	14739		7.1017	0	1	3067700			26009	5295	18714	18852	25472	25472					0.09695175545516577
KLLNKVWK	8	Unmodified	_KLLNKVWK_					0	0	0		ENSG00000100075|ENST00000215882|SLC25A1	ENSG00000100075|ENST00000215882|SLC25A1	ENSG00000100075|ENST00000215882|SLC25A1	MULTI-MSMS	A375_MHC_IP_R1	1	515.3530883789062	2	514.834394	1027.65424	-0.83839	-0.00043163	0.32195	0.00016575	-0.51644	-0.00026588	514.8345605422118	67.289	0.71469	67.289	66.99	67.704	0					21	13	2	0	0	0	0.76248	2	24380	24366;24380		16.942	2.104	1	1933600			26010	2110	18715	18853	25473;25474	25474					0.1415150685320441
KLLPAGHSV	9	Unmodified	_KLLPAGHSV_					0	0	0		ENSG00000182768|ENST00000379095|NGRN;ENST00000561573.1_1_15:90806992-90815017:+|nuORF	ENSG00000182768|ENST00000379095|NGRN	ENSG00000182768|ENST00000379095|NGRN	MULTI-MSMS	A375_MHC_IP_R1	1	461.6791687011719	2	461.279452	920.544351	-0.38371	-0.000177	-0.15437	-7.1209E-05	-0.53808	-0.0002482	461.2793928578971	27.696	0.4544	27.696	27.482	27.937	0					15	8	2	0	0	0	0.36834	1	8463	8463		26.268	8.1218	1	2585500			26011	8434	18716	18854	25475	25475					0.08090081514046688
KLLPAGHSV	9	Unmodified	_KLLPAGHSV_					0	0	0		ENSG00000182768|ENST00000379095|NGRN;ENST00000561573.1_1_15:90806992-90815017:+|nuORF	ENSG00000182768|ENST00000379095|NGRN	ENSG00000182768|ENST00000379095|NGRN	MULTI-MSMS	A375_MHC_IP_R2	2	461.67877197265625	2	461.279452	920.544351	-0.66518	-0.00030683	0.16822	7.7597E-05	-0.49696	-0.00022924	461.27949923540706	26.831	0.51287	27.491	27.363	27.876	0.65992					15	9	2	0	0	0	0.27064	1	9149	9149		32.786	8.7651	1	2407400			26012	8434	18716	18854	25476	25476					0.08090081514046688
KLLPAQLP	8	Unmodified	_KLLPAQLP_					0	0	0		ENST00000496744.5_1_1:150482366-150482774:+|nuORF;ENST00000470432.5_1_1:150482366-150482774:+|nuORF;nc|ENSG00000143369|Q16610-3|ECM1;nc|ENSG00000143369|Q16610-2|ECM1;ENSG00000143369|ENST00000369047|ECM1;nc|ENSG00000143369|Q16610-4|ECM1	ENST00000496744.5_1_1:150482366-150482774:+|nuORF	ENST00000496744.5_1_1:150482366-150482774:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	440.6864929199219	2	440.286746	878.558939	-0.34982	-0.00015402	-0.022149	-9.7517E-06	-0.37196	-0.00016377	440.2866777654357	67.236	0.66028	67.973	67.648	68.308	0.73631					27	12	3	0	0	0	0.70206	1	25427	25427		34.102	0	1	6420900			26013	5376	18717	18855	25477	25477					0.11480153662182602
KLLPENNVL	9	Unmodified	_KLLPENNVL_					0	0	0		nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.N268Ifs*85|1|0.88|ENSG00000141510|chr17:7673817-7673818|-/TCCGTCCCAGTAGATTACCACTA|frameshift_variant;ENSG00000141510|ENST00000269305|TP53;TP53|p.H214Qfs*7|1|0.58|ENSG00000141510|chr17:7674888-7674889|TA/-|frameshift_variant;TP53|p.I195Sfs*52|1|0.5|ENSG00000141510|chr17:7674949-7674949|A/-|frameshift_variant;TP53|p.V97Sfs*26|1|0.16|ENSG00000141510|chr17:7676081-7676081|A/-|frameshift_variant	nc|ENSG00000141510|P04637-2|TP53	nc|ENSG00000141510|P04637-2|TP53	MULTI-MSMS	A375_MHC_IP_R1	1	520.7108154296875	2	520.310949	1038.60735	-0.72665	-0.00037809	0.014379	7.4813E-06	-0.71228	-0.0003706	520.3109113072002	66.576	0.56074	66.576	66.275	66.836	0					17	10	2	0	0	0	0.31062	1	24113	24113		29.841	11.467	1	3708700			26014	5248	18718	18856	25478	25478					0.08958602511415847
KLLPENNVL	9	Unmodified	_KLLPENNVL_					0	0	0		nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.N268Ifs*85|1|0.88|ENSG00000141510|chr17:7673817-7673818|-/TCCGTCCCAGTAGATTACCACTA|frameshift_variant;ENSG00000141510|ENST00000269305|TP53;TP53|p.H214Qfs*7|1|0.58|ENSG00000141510|chr17:7674888-7674889|TA/-|frameshift_variant;TP53|p.I195Sfs*52|1|0.5|ENSG00000141510|chr17:7674949-7674949|A/-|frameshift_variant;TP53|p.V97Sfs*26|1|0.16|ENSG00000141510|chr17:7676081-7676081|A/-|frameshift_variant	nc|ENSG00000141510|P04637-2|TP53	nc|ENSG00000141510|P04637-2|TP53	MULTI-MSMS	A375_MHC_IP_R2	2	520.7105102539062	2	520.310949	1038.60735	-0.81266	-0.00042283	-0.077876	-4.052E-05	-0.89053	-0.00046335	520.3109219109532	65.603	0.71245	66.341	66.018	66.731	0.73812					24	13	3	0	0	0	0.16945	1	24863	24863		40.239	16.449	1	4552600			26015	5248	18718	18856	25479	25479					0.08958602511415847
KLLPGDIHQI	10	Unmodified	_KLLPGDIHQI_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	MULTI-SECPEP	A375_MHC_IP_R1	1	567.152587890625	2	567.337498	1132.66044	-0.29855	-0.00016938	0.080434	4.5633E-05	-0.21812	-0.00012375	567.3373978047985	55.815	0.3569	55.815	55.584	55.941	0					10	6	2	0	0	0	0.65827	1	20005	20005		32.898	8.8772	1	1642400			26016	5861	18719	18857	25480	25480					0.099419802940929
KLLPGDIHQI	10	Unmodified	_KLLPGDIHQI_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	MULTI-MSMS	A375_MHC_IP_R2	2	378.9608459472656	3	378.560758	1132.66044	-0.042095	-1.5935E-05	-0.10398	-3.9362E-05	-0.14607	-5.5297E-05	378.5607041170571	54.864	0.45926	55.615	55.37	55.83	0.75075					14	8	2	0	0	0	0.22146	1	20737	20737		47.053	34.878	1	2268100			26017	5861	18719	18857	25481	25481					0.099419802940929
KLLPGDIHQI	10	Unmodified	_KLLPGDIHQI_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	MULTI-MATCH	A375_MHC_IP_R1	1		3	378.560758	1132.66044	0.40771	0.00015434	-0.097921	-3.7069E-05	0.30979	0.00011727	378.56077574945886	55.866	0.55908	55.866	55.584	56.143	0	0.12585	3.371E-06	NaN	47.053	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1263100			26018	5861	18719	18857							0.099419802940929
KLLPGDIHQI	10	Unmodified	_KLLPGDIHQI_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	MULTI-MATCH	A375_MHC_IP_R2	2		2	567.337498	1132.66044	-0.54272	-0.0003079	0.42003	0.0002383	-0.12269	-6.9608E-05	567.3376355348556	54.838	0.30688	55.589	55.422	55.729	0.75075	-0.11304	0.00019913	NaN	32.898	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2418200			26019	5861	18719	18857							0.099419802940929
KLLPGDLTQV	10	Unmodified	_KLLPGDLTQV_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-SECPEP	A375_MHC_IP_R1	1	542.1539916992188	2	542.324057	1082.63356	-0.61756	-0.00033492	0.67213	0.00036451	0.054571	2.9595E-05	542.3243254824704	79.839	0.61428	79.839	79.522	80.136	0					30	11	4	0	0	0	0.012511	1	29142	29142		114.19	58.684	1	15010000			26020	5684	18720	18858	25482	25482					0.09554871682894372
KLLPGDLTQV	10	Unmodified	_KLLPGDLTQV_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-SECPEP	A375_MHC_IP_R2	2	542.7238159179688	2	542.324057	1082.63356	-0.74474	-0.00040389	-0.096029	-5.2079E-05	-0.84077	-0.00045597	542.3239626271313	78.974	0.60963	79.718	79.387	79.997	0.74474					28	11	3	0	0	0	0.027024	1	29928	29928		96.936	45.306	1	14387000			26021	5684	18720	18858	25483	25483					0.09554871682894372
KLLPGSAIQAL	11	Unmodified	_KLLPGSAIQAL_					0	0	0		ENSG00000113583|ENST00000231512|C5orf15;ENST00000509913.1_1_5:133295698-133304275:-|nuORF	ENSG00000113583|ENST00000231512|C5orf15	ENSG00000113583|ENST00000231512|C5orf15	MULTI-MSMS	A375_MHC_IP_R1	1	555.8450317382812	2	555.847699	1109.68084	-0.48478	-0.00026946	0.15916	8.8469E-05	-0.32562	-0.00018099	555.8475483840047	82.93	0.50359	82.93	82.722	83.226	0					14	9	2	0	0	0	0.4429	1	30331	30331		35.612	1.2105	1	1539900			26022	3163	18721	18859	25484	25484					0.13039150953886747
KLLPQLTYL	9	Unmodified	_KLLPQLTYL_					0	0	0		nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B;ENST00000486769.1_1_9:100760930-100767440:+|nuORF;ENST00000483551.6_1_15:69072422-69081590:-|nuORF;ENSG00000140350|ENST00000465139|ANP32A	nc|ENSG00000136938|Q92688-2|ANP32B	nc|ENSG00000136938|Q92688-2|ANP32B	MULTI-MSMS	A375_MHC_IP_R1	1	545.2394409179688	2	544.839342	1087.66413	-0.52653	-0.00028688	0.18087	9.8543E-05	-0.34567	-0.00018833	544.8393787248282	103.9	0.71261	103.9	103.57	104.29	0					40	13	4	0	0	0	0.0095015	2	38107	38107;38201		129.77	62.428	1	17134000			26023	4845	18722	18860	25485;25486	25485					0.12380650067916577
KLLPQLTYL	9	Unmodified	_KLLPQLTYL_					0	0	0		nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B;ENST00000486769.1_1_9:100760930-100767440:+|nuORF;ENST00000483551.6_1_15:69072422-69081590:-|nuORF;ENSG00000140350|ENST00000465139|ANP32A	nc|ENSG00000136938|Q92688-2|ANP32B	nc|ENSG00000136938|Q92688-2|ANP32B	MULTI-SECPEP	A375_MHC_IP_R2	2	545.2388916015625	2	544.839342	1087.66413	-0.79772	-0.00043463	0.26016	0.00014175	-0.53755	-0.00029288	544.8393585078356	102.88	0.71129	103.64	103.28	103.99	0.76428					39	13	4	0	0	0	0.049608	1	38924	38924		92.653	92.653	1	18299000			26024	4845	18722	18860	25487	25487					0.12380650067916577
KLLPSVTEL	9	Unmodified	_KLLPSVTEL_					0	0	0		ENSG00000122728|ENST00000242310|TAF1L;nc|ENSG00000147133|P21675-25|TAF1;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675|TAF1;ENSG00000147133|ENST00000423759|TAF1;nc|ENSG00000147133|P21675-1|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-13|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-21|TAF1;nc|ENSG00000147133|P21675-24|TAF1;nc|ENSG00000147133|P21675-23|TAF1;TAF1|p.L947Rfs*2|1|0.51|ENSG00000147133|chrX:71392630-71392630|T/-|frameshift_variant;ENST00000483365.1_1_X:70596867-70597689:+|nuORF	ENSG00000122728|ENST00000242310|TAF1L	ENSG00000122728|ENST00000242310|TAF1L	MULTI-SECPEP	A375_MHC_IP_R1	1	500.7076721191406	2	500.307875	998.601197	-0.42911	-0.00021469	-0.083467	-4.1759E-05	-0.51258	-0.00025645	500.3077713084135	83.56	1.0163	83.56	83.125	84.141	0					42	19	4	0	0	0	0.046478	1	30538	30538		92.653	50.814	1	9123200			26025	3804	18723	18861	25488	25488					0.10184084279887884
KLLPSVTEL	9	Unmodified	_KLLPSVTEL_					0	0	0		ENSG00000122728|ENST00000242310|TAF1L;nc|ENSG00000147133|P21675-25|TAF1;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675|TAF1;ENSG00000147133|ENST00000423759|TAF1;nc|ENSG00000147133|P21675-1|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-13|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-21|TAF1;nc|ENSG00000147133|P21675-24|TAF1;nc|ENSG00000147133|P21675-23|TAF1;TAF1|p.L947Rfs*2|1|0.51|ENSG00000147133|chrX:71392630-71392630|T/-|frameshift_variant;ENST00000483365.1_1_X:70596867-70597689:+|nuORF	ENSG00000122728|ENST00000242310|TAF1L	ENSG00000122728|ENST00000242310|TAF1L	MULTI-SECPEP	A375_MHC_IP_R2	2	500.7075500488281	2	500.307875	998.601197	-0.59189	-0.00029613	-0.61841	-0.0003094	-1.2103	-0.00060552	500.30775741693486	82.585	0.65652	83.328	82.992	83.648	0.74294					32	12	3	0	0	0	0.061442	1	31330	31330		82.529	32.596	1	7698000			26026	3804	18723	18861	25489	25489					0.10184084279887884
KLLPYIVGV	9	Unmodified	_KLLPYIVGV_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-SECPEP	A375_MHC_IP_R2	2	501.72296142578125	2	501.323328	1000.6321	-0.54067	-0.00027105	0.089298	4.4767E-05	-0.45137	-0.00022628	501.32333155235375	104.39	0.40955	105.15	104.95	105.36	0.76308					12	7	2	0	0	0	0.28475	1	39520	39520		39.957	0	1	1115200			26027	6654	18724	18862	25490	25490					0.1318128238481222
KLLQDISEA	9	Unmodified	_KLLQDISEA_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	A375_MHC_IP_R1	1	509.1842041015625	2	508.784764	1015.55498	-0.50335	-0.0002561	-0.74848	-0.00038081	-1.2518	-0.00063691	508.7839063031696	52.501	0.75996	52.501	52.237	52.997	0					24	14	2	0	0	0	0.14572	1	18729	18729		45.7	0	1	2728100			26028	7831	18725	18863	25491	25491					0.04782019377796587
KLLQGVAEL	9	Unmodified	_KLLQGVAEL_					0	0	0		ENSG00000162852|ENST00000366513|CNST	ENSG00000162852|ENST00000366513|CNST	ENSG00000162852|ENST00000366513|CNST	MULTI-SECPEP	A375_MHC_IP_R1	1	486.1533508300781	2	485.800217	969.585882	-0.059495	-2.8903E-05	-0.017418	-8.4619E-06	-0.076914	-3.7365E-05	485.8001660003119	72.159	0.81042	72.159	71.866	72.676	0					27	15	3	0	0	0	0.05021	1	26291	26291		88.954	24.718	1	4512400			26029	6605	18726	18864	25492	25492					0.09987217482705546
KLLQLSSKV	9	Unmodified	_KLLQLSSKV_					0	0	0		ENSG00000153347|ENST00000283357|FAM81B	ENSG00000153347|ENST00000283357|FAM81B	ENSG00000153347|ENST00000283357|FAM81B	MULTI-SECPEP	A375_MHC_IP_R2	2	508.19390869140625	2	508.329142	1014.64373	-1.0007	-0.00050867	-0.10323	-5.2474E-05	-1.1039	-0.00056115	508.32913455071525	40.97	0.40611	41.744	41.54	41.946	0.77451					9	7	2	0	0	0	0.71541	1	15199	15199		11.64	2.2572	1	1224900			26030	6028	18727	18865	25493	25493					0.1369947940813745
KLLQNVNDT	9	Unmodified	_KLLQNVNDT_					0	0	0		ENSG00000112343|ENST00000357085|TRIM38	ENSG00000112343|ENST00000357085|TRIM38	ENSG00000112343|ENST00000357085|TRIM38	MULTI-SECPEP	A375_MHC_IP_R2	2	522.216064453125	2	522.787838	1043.56112	-0.8476	-0.00044311	-0.58263	-0.00030459	-1.4302	-0.00074771	522.7879251724507	49.644	0.50802	50.399	50.144	50.652	0.75549					19	9	3	0	0	0	0.46045	1	18586	18586		29.082	13.234	1	1815800			26031	3079	18728	18866	25494	25494					0.04108537609317864
KLLSDPNYGV	10	Unmodified	_KLLSDPNYGV_					0	0	0		ENSG00000170876|ENST00000306077|TMEM43	ENSG00000170876|ENST00000306077|TMEM43	ENSG00000170876|ENST00000306077|TMEM43	MULTI-SECPEP	A375_MHC_IP_R2	2	553.6971435546875	2	553.298039	1104.58152	-0.87755	-0.00048555	-0.2291	-0.00012676	-1.1066	-0.00061231	553.2979386841959	55.749	0.76245	56.499	56.186	56.948	0.75015					28	14	3	0	0	0	0.016128	1	21051	21051		128.93	66.36	1	10975000			26032	7551	18729	18867	25495	25495					0.03341708269135779
KLLSDPNYGV	10	Unmodified	_KLLSDPNYGV_					0	0	0		ENSG00000170876|ENST00000306077|TMEM43	ENSG00000170876|ENST00000306077|TMEM43	ENSG00000170876|ENST00000306077|TMEM43	MULTI-MATCH	A375_MHC_IP_R1	1		2	553.298039	1104.58152	-0.43389	-0.00024007	-0.23453	-0.00012976	-0.66841	-0.00036983	553.2978894129128	56.53	0.55978	56.53	56.244	56.804	0	0.015596	-2.1104E-06	NaN	128.93	29	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11014000			26033	7551	18729	18867							0.03341708269135779
KLLSHSLLV	9	Unmodified	_KLLSHSLLV_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-SECPEP	A375_MHC_IP_R1	1	505.72332763671875	2	505.32386	1008.63317	-0.40499	-0.00020465	-0.035884	-1.8133E-05	-0.44087	-0.00022278	505.3237490341333	59.089	0.66233	59.089	58.836	59.498	0					24	12	3	0	0	0	0.11711	1	21242	21242		60.074	5.3004	1	3698600		+	26034	579	18730	18868	25496	25496					0.12919496753704607
KLLSHSLLV	9	Unmodified	_KLLSHSLLV_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-SECPEP	A375_MHC_IP_R2	2	505.72344970703125	2	505.32386	1008.63317	-0.9743	-0.00049233	-0.26153	-0.00013216	-1.2358	-0.00062449	505.3237651225185	57.869	0.45395	58.618	58.375	58.829	0.74894					19	8	3	0	0	0	0.37663	1	21889	21889		29.841	11.694	1	4388700		+	26035	579	18730	18868	25497	25497					0.12919496753704607
KLLSHSLLVTL	11	Unmodified	_KLLSHSLLVTL_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	A375_MHC_IP_R1	1	408.9954528808594	3	408.595579	1222.76491	-0.32675	-0.00013351	0.22632	9.2474E-05	-0.10043	-4.1036E-05	408.59558705477633	85.217	0.45645	85.217	84.955	85.412	0					20	8	3	0	0	0	0.52331	1	31229	31229		29.291	3.1705	1	2869700		+	26036	579	18731	18869	25498	25498					0.16243682050821917
KLLSHSLLVTL	11	Unmodified	_KLLSHSLLVTL_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	A375_MHC_IP_R2	2	408.9955749511719	3	408.595579	1222.76491	0.082214	3.3592E-05	0.042956	1.7552E-05	0.12517	5.1144E-05	408.5955355615391	83.898	0.51343	84.637	84.458	84.971	0.73962					20	9	3	0	0	0	0.43802	1	31924	31924		35.996	3.3793	1	1813600		+	26037	579	18731	18869	25499	25499					0.16243682050821917
KLLSKFYEL	9	Unmodified	_KLLSKFYEL_					0	0	0		nc|ENSG00000090686|Q86UV5-4|USP48;nc|ENSG00000090686|Q86UV5-7|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48	nc|ENSG00000090686|Q86UV5-4|USP48	nc|ENSG00000090686|Q86UV5-4|USP48	MULTI-MSMS	A375_MHC_IP_R1	1	381.2938232421875	3	380.893625	1139.65905	0.48217	0.00018366	-0.1016	-3.87E-05	0.38057	0.00014496	380.89347840992	71.241	1.0659	71.241	70.902	71.968	0					43	20	4	0	0	0	0.13728	1	25830	25830		43.982	16.759	1	8589100			26038	1959	18732	18870	25500	25500					0.09480346205350543
KLLSKFYEL	9	Unmodified	_KLLSKFYEL_					0	0	0		nc|ENSG00000090686|Q86UV5-4|USP48;nc|ENSG00000090686|Q86UV5-7|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48	nc|ENSG00000090686|Q86UV5-4|USP48	nc|ENSG00000090686|Q86UV5-4|USP48	MULTI-MSMS	A375_MHC_IP_R2	2	381.2935791015625	3	380.893625	1139.65905	0.041604	1.5847E-05	-0.068234	-2.599E-05	-0.02663	-1.0143E-05	380.8935297440579	70.184	1.0649	70.918	70.54	71.605	0.73421					48	20	4	0	0	0	0.13728	1	26570	26570		43.982	19.1	1	14677000			26039	1959	18732	18870	25501	25501					0.09480346205350543
KLLSKFYEL	9	Unmodified	_KLLSKFYEL_					0	0	0		nc|ENSG00000090686|Q86UV5-4|USP48;nc|ENSG00000090686|Q86UV5-7|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48	nc|ENSG00000090686|Q86UV5-4|USP48	nc|ENSG00000090686|Q86UV5-4|USP48	MULTI-SECPEP	A375_MHC_IP_R2	2	571.2368774414062	2	570.8368	1139.65905	-0.2362	-0.00013483	-1.3426	-0.00076641	-1.5788	-0.00090123	570.8363998812398	70.191	0.76286	70.925	70.488	71.251	0.7342					32	14	3	0	0	0	0.0575	1	26578	26578		76.825	36.875	1	10027000			26040	1959	18732	18870	25502	25502					0.09480346205350543
KLLSKTPEL	9	Unmodified	_KLLSKTPEL_					0	0	0		ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX;ENST00000503126.1_1_5:179133324-179137021:+|nuORF	ENSG00000127022|ENST00000247461|CANX	ENSG00000127022|ENST00000247461|CANX	MULTI-SECPEP	A375_MHC_IP_R1	1	515.2203979492188	2	514.82115	1027.62775	-0.53153	-0.00027364	-0.72837	-0.00037498	-1.2599	-0.00064862	514.8205931022542	40.855	0.65577	40.855	40.509	41.164	0					27	12	3	0	0	0	0.040539	1	14064	14064		100.71	18.179	1	11910000			26041	4073	18733	18871	25503	25503					0.1150377317121638
KLLSKTPEL	9	Unmodified	_KLLSKTPEL_					0	0	0		ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX;ENST00000503126.1_1_5:179133324-179137021:+|nuORF	ENSG00000127022|ENST00000247461|CANX	ENSG00000127022|ENST00000247461|CANX	MULTI-SECPEP	A375_MHC_IP_R2	2	515.2196655273438	2	514.82115	1027.62775	-0.80464	-0.00041424	-0.91118	-0.0004691	-1.7158	-0.00088334	514.8205585058403	39.857	0.60998	40.632	40.32	40.93	0.77451					25	11	3	0	0	0	0.011364	1	14729	14729		79.427	17.825	1	8027700			26042	4073	18733	18871	25504	25504					0.1150377317121638
KLLSKVLLLL	10	Unmodified	_KLLSKVLLLL_					0	0	0			REV__ENST00000562413.2_1_6:147124063-147124576:-|nuORF	REV__ENST00000562413.2_1_6:147124063-147124576:-|nuORF	MSMS	A375_MHC_IP_R2	2	570.4113159179688	2	570.409935	1138.80532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.307	1	86.043	85.543	86.543	0.73601								0	0	0	0.15628	1	32430	32430		0.45834	0	1		+		26043	26188	18734	18872	25505	25505					0.24146648441228535
KLLSSLAFKL	10	Unmodified	_KLLSSLAFKL_					0	0	0		ENST00000535924.6_1_1:85785763-85786000:-|nuORF	ENST00000535924.6_1_1:85785763-85786000:-|nuORF	ENST00000535924.6_1_1:85785763-85786000:-|nuORF	MSMS	A375_MHC_IP_R1	1	373.932861328125	3	373.909387	1118.70633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.305	1	33.305	32.805	33.805	0								0	0	0	0.15604	1	10860	10860		1.2148	0.51716	1				26044	13233	18735	18873	25506	25506					0.1517262547631617
KLLTTQAQLEP	11	Unmodified	_KLLTTQAQLEP_					0	0	0			REV__DNAH11|p.N3604K|1|0.89|ENSG00000105877|chr7:21842664-21842664|T/A|missense_variant	REV__DNAH11|p.N3604K|1|0.89|ENSG00000105877|chr7:21842664-21842664|T/A|missense_variant	MSMS	A375_MHC_IP_R1	1	414.6586608886719	3	414.574844	1240.7027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.419	1	53.419	52.919	53.919	0								0	0	0	0.16209	1	19044	19044		7.846	0.36898	1		+		26045	16004	18736	18874	25507	25507					0.09197910911780127
KLLVHLIKDL	10	Unmodified	_KLLVHLIKDL_					0	0	0			REV__ENST00000471679.1_1_3:17688462-17784150:-|nuORF	REV__ENST00000471679.1_1_3:17688462-17784150:-|nuORF	MSMS	A375_MHC_IP_R1	1	596.5213012695312	2	596.394816	1190.77508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.064	1	92.064	91.564	92.564	0								0	0	0	0.15565	1	33830	33830		2.4985	0	1		+		26046	25123	18737	18875	25508	25508					0.18732289776062316
KLLVKKSIHP	10	Unmodified	_KLLVKKSIHP_					0	0	0			REV__ENST00000539309.5_1_12:4677127-4699979:+|nuORF	REV__ENST00000539309.5_1_12:4677127-4699979:+|nuORF	MSMS	A375_MHC_IP_R1	1	581.7869262695312	2	581.887158	1161.75976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.22	1	147.22	146.72	147.72	0								0	0	0	0.15631	1	56273	56273		0.35063	0	1		+		26047	16191	18738	18876	25509	25509					0.1853542297885724
KLMDKVVRL	9	Unmodified	_KLMDKVVRL_					0	0	0		nc|ENSG00000114423|Q13191-3|CBLB;nc|ENSG00000114423|Q13191-2|CBLB;ENSG00000114423|ENST00000394030|CBLB;ENSG00000110395|ENST00000264033|CBL	nc|ENSG00000114423|Q13191-3|CBLB	nc|ENSG00000114423|Q13191-3|CBLB	MULTI-SECPEP	A375_MHC_IP_R1	1	368.62799072265625	3	367.898605	1100.67399	0.42419	0.00015606	-0.50594	-0.00018613	-0.081748	-3.0075E-05	367.89835102829295	45.753	0.50854	45.753	45.585	46.094	0					12	9	2	0	0	0	0.57806	1	16042	16042		24.882	20.692	1	2567200			26048	3220	18739	18877	25510	25510					0.1276751480168059
KLMDKVVRL	9	Unmodified	_KLMDKVVRL_					0	0	0		nc|ENSG00000114423|Q13191-3|CBLB;nc|ENSG00000114423|Q13191-2|CBLB;ENSG00000114423|ENST00000394030|CBLB;ENSG00000110395|ENST00000264033|CBL	nc|ENSG00000114423|Q13191-3|CBLB	nc|ENSG00000114423|Q13191-3|CBLB	MULTI-MSMS	A375_MHC_IP_R2	2	368.2984619140625	3	367.898605	1100.67399	0.074176	2.7289E-05	-0.0066628	-2.4512E-06	0.067513	2.4838E-05	367.8985086088819	44.709	0.45737	45.478	45.188	45.646	0.7691					13	8	2	0	0	0	0.22164	1	16705	16705		36.395	23.522	1	2276900			26049	3220	18739	18877	25511	25511					0.1276751480168059
KLMDYHQLHN	10	Unmodified	_KLMDYHQLHN_					0	0	0			REV__KLHDC8A|p.K186Gfs*13|1|0.13|ENSG00000162873|chr1:205339396-205339397|-/ACTCCCT|frameshift_variant	REV__KLHDC8A|p.K186Gfs*13|1|0.13|ENSG00000162873|chr1:205339396-205339397|-/ACTCCCT|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	649.7674560546875	2	649.819147	1297.62374	-0.97625	-0.00063439	0.10454	6.793E-05	-0.87171	-0.00056646	649.819301009069	40.972	0.35597	41.747	41.59	41.946	0.77451					11	6	2	0	0	0	0.71653	1	15167	15167		4.897	0.95262	1	2913600	+		26050	20313	18740	18878	25512	25512					-0.013166395941425435
KLMEEIREL	9	Oxidation (M)	_KLM(Oxidation (M))EEIREL_		KLM(1)EEIREL		KLM(61)EEIREL	0	0	1		ENSG00000122482|ENST00000337393|ZNF644;nc|ENSG00000122482|Q9H582-2|ZNF644;ZNF644|p.K813Rfs*24|1|0.28|ENSG00000122482|chr1:90938916-90938916|T/-|frameshift_variant	ENSG00000122482|ENST00000337393|ZNF644	ENSG00000122482|ENST00000337393|ZNF644	MULTI-MSMS	A375_MHC_IP_R1	1	589.218505859375	2	588.818281	1175.62201	-0.42121	-0.00024802	0.39314	0.00023149	-0.028078	-1.6533E-05	588.8185067787945	40.003	0.9157	40.003	39.643	40.559	0					36	17	3	0	0	0	0.058715	1	13722	13722		60.899	24.393	1	5994900			26051	3782	18741	18879	25513	25513		194			0.04122306597264469
KLMEEIREL	9	Oxidation (M)	_KLM(Oxidation (M))EEIREL_					0	0	1		ENSG00000122482|ENST00000337393|ZNF644;nc|ENSG00000122482|Q9H582-2|ZNF644;ZNF644|p.K813Rfs*24|1|0.28|ENSG00000122482|chr1:90938916-90938916|T/-|frameshift_variant	ENSG00000122482|ENST00000337393|ZNF644	ENSG00000122482|ENST00000337393|ZNF644	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	588.818281	1175.62201	-0.73174	-0.00043086	0.28516	0.00016791	-0.44657	-0.00026295	588.8183142112659	39.12	0.40949	39.894	39.708	40.118	0.77451	-0.054561	-5.3729E-05	NaN	60.899	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3622000			26052	3782	18741	18879				194			0.04122306597264469
KLMEEIREL	9	Unmodified	_KLMEEIREL_					0	0	0		ENSG00000122482|ENST00000337393|ZNF644;nc|ENSG00000122482|Q9H582-2|ZNF644;ZNF644|p.K813Rfs*24|1|0.28|ENSG00000122482|chr1:90938916-90938916|T/-|frameshift_variant	ENSG00000122482|ENST00000337393|ZNF644	ENSG00000122482|ENST00000337393|ZNF644	MULTI-SECPEP	A375_MHC_IP_R1	1	580.1766967773438	2	580.820824	1159.62709	-0.26851	-0.00015596	-2.2412	-0.0013018	-2.5097	-0.0014577	580.820639149744	58.964	0.66184	58.964	58.481	59.143	0					18	12	2	0	0	0	0.57304	1	21227	21227		29.841	12.728	1	2010700			26053	3782	18741	18880	25514	25514					0.053666104598733
KLMEEIREL	9	Unmodified	_KLMEEIREL_					0	0	0		ENSG00000122482|ENST00000337393|ZNF644;nc|ENSG00000122482|Q9H582-2|ZNF644;ZNF644|p.K813Rfs*24|1|0.28|ENSG00000122482|chr1:90938916-90938916|T/-|frameshift_variant	ENSG00000122482|ENST00000337393|ZNF644	ENSG00000122482|ENST00000337393|ZNF644	MULTI-MSMS	A375_MHC_IP_R2	2	387.9492492675781	3	387.549641	1159.62709	-0.4065	-0.00015754	0.080268	3.1108E-05	-0.32623	-0.00012643	387.5495793558337	57.938	0.45235	58.687	58.427	58.879	0.74894					15	8	2	0	0	0	0.15441	1	21950	21950		41.347	2.134	1	1938000			26054	3782	18741	18880	25515	25515					0.053666104598733
KLMELLEEI	9	Unmodified	_KLMELLEEI_					0	0	0		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-MSMS	A375_MHC_IP_R1	1	559.7122192382812	2	559.3123	1116.61005	-0.56548	-0.00031628	0.42934	0.00024013	-0.13615	-7.6148E-05	559.3125468594507	119.26	0.70959	119.26	118.98	119.69	0					29	13	3	0	0	0	0.02114	1	44051	44051		82.529	9.5614	1	67112000			26055	7796	18742	18881	25516	25516					0.056406898540672046
KLMELLEEI	9	Oxidation (M)	_KLM(Oxidation (M))ELLEEI_		KLM(1)ELLEEI		KLM(73)ELLEEI	0	0	1		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-SECPEP	A375_MHC_IP_R1	1	567.7094116210938	2	567.309758	1132.60496	-0.48192	-0.0002734	0.29616	0.00016801	-0.18576	-0.00010538	567.3100098236085	94.439	1.2191	94.439	93.941	95.16	0					73	23	5	0	0	0	0.061442	1	34725	34725		72.968	27.268	1	13128000			26056	7796	18742	18882	25517	25517		389			0.04396385991435636
KLMELLEEI	9	Oxidation (M)	_KLM(Oxidation (M))ELLEEI_		KLM(1)ELLEEI		KLM(66)ELLEEI	0	0	1		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-SECPEP	A375_MHC_IP_R1	1	567.7100219726562	2	567.309758	1132.60496	-0.4282	-0.00024292	1.3373	0.00075864	0.90905	0.00051571	567.3108508956673	95.49	1.5217	95.49	94.956	96.478	0					60	29	3	0	0	0	0.087712	1	35063	35063		66.457	20.436	1	8979400			26057	7796	18742	18882	25518	25518		389			0.04396385991435636
KLMELLEEI	9	Oxidation (M)	_KLM(Oxidation (M))ELLEEI_		KLM(1)ELLEEI		KLM(58)ELLEEI	0	0	1		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-SECPEP	A375_MHC_IP_R2	2	567.7101440429688	2	567.309758	1132.60496	-0.25119	-0.0001425	0.31108	0.00017648	0.059894	3.3979E-05	567.3100046792762	93.441	1.2166	94.185	93.501	94.717	0.74474					52	23	3	0	0	0	0.20451	1	35505	35505		57.722	19.748	1	11154000			26058	7796	18742	18882	25519	25519		389			0.04396385991435636
KLMHTLTHKFK	11	Unmodified	_KLMHTLTHKFK_					0	0	0		ENST00000470521.1_1_1:222791452-222819114:+|nuORF	ENST00000470521.1_1_1:222791452-222819114:+|nuORF	ENST00000470521.1_1_1:222791452-222819114:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	693.3007202148438	2	692.400107	1382.78566	-0.61842	-0.00042819	-0.59014	-0.00040862	-1.2086	-0.00083681	692.4008186225013	132.86	1.3205	133.03	132.74	134.06	0.16487					54	25	3	0	0	0	0.7362	1	52581	52581		2.9952	0.26005	1	9992400			26059	12336	18743	18883	25520	25520					0.10957949158773772
KLMIAPYEM	9	Unmodified	_KLMIAPYEM_					0	0	0			REV__ENSG00000197816|ENST00000529487|CCDC180	REV__ENSG00000197816|ENST00000529487|CCDC180	MULTI-SECPEP	A375_MHC_IP_R2	2	366.28204345703125	3	365.857418	1094.55042	0.031721	1.1605E-05	-1.3178	-0.00048213	-1.2861	-0.00047052	365.85746850713997	39.697	0.40702	40.472	40.32	40.727	0.77451					10	7	2	0	0	0	0.76187	1	14717	14717		7.609	0	1	796850	+		26060	22318	18744	18884	25521	25521					0.006930956390306164
KLMKQLLLL	9	Unmodified	_KLMKQLLLL_					0	0	0			REV__ENSG00000111642|ENST00000544040|CHD4	REV__ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	A375_MHC_IP_R2	2	367.2542419433594	3	367.247234	1098.71987	0.11966	4.3946E-05	1.1792	0.00043305	1.2988	0.00047699	367.2476538988682	30.976	1.2191	31.695	31.417	32.636	0.71857					30	23	2	0	0	0	0.68705	1	10927	10927		8.1555	1.9637	1	1632300	+		26061	17680	18745	18885	25522	25522					0.17446159983910547
KLMPGRIQL	9	Unmodified	_KLMPGRIQL_					0	0	0		nc|ENSG00000163694|A0AV96-2|RBM47;ENSG00000163694|ENST00000295971|RBM47	nc|ENSG00000163694|A0AV96-2|RBM47	nc|ENSG00000163694|A0AV96-2|RBM47	MULTI-SECPEP	A375_MHC_IP_R2	2	528.660888671875	2	528.323337	1054.63212	-0.99526	-0.00052582	0.0082489	4.3581E-06	-0.98701	-0.00052146	528.3232141436335	53.712	0.3077	54.463	54.249	54.557	0.75105					8	5	2	0	0	0	0.60917	1	20291	20291		13.906	7.7003	1	1791200			26062	6710	18746	18886	25523	25523					0.10698959113165074
KLMPGRIQL	9	Unmodified	_KLMPGRIQL_					0	0	0		nc|ENSG00000163694|A0AV96-2|RBM47;ENSG00000163694|ENST00000295971|RBM47	nc|ENSG00000163694|A0AV96-2|RBM47	nc|ENSG00000163694|A0AV96-2|RBM47	MULTI-MATCH	A375_MHC_IP_R1	1		2	528.323337	1054.63212	-0.50449	-0.00026654	-0.20095	-0.00010617	-0.70545	-0.0003727	528.323375991356	54.813	0.20255	54.813	54.67	54.873	0	0.17527	-0.00020257	NaN	13.906	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1162000			26063	6710	18746	18886							0.10698959113165074
KLMTALVNV	9	Unmodified	_KLMTALVNV_					0	0	0		nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1;ENST00000462818.1_1_3:136219063-136323180:-|nuORF;STAG2|p.M224I|1|0.36|ENSG00000101972|chrX:124047358-124047358|G/A|missense_variant;ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000101972|ENST00000371145|STAG2	ENSG00000101972|ENST00000371145|STAG2	MULTI-MSMS	A375_MHC_IP_R2	2	495.4582214355469	2	494.79662	987.578688	-0.47216	-0.00023363	-0.79202	-0.00039189	-1.2642	-0.00062551	494.79628427752345	76.347	0.55923	77.087	76.742	77.301	0.74052					15	10	2	0	0	0	0.27064	1	28964	28964		32.786	2.1491	1	2254500			26064	2340;3521	18747	18887	25524	25524					0.08440161610633368
KLNDLIQRL	9	Unmodified	_KLNDLIQRL_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	A375_MHC_IP_R1	1	556.192626953125	2	556.842948	1111.67134	-0.43633	-0.00024297	0.23188	0.00012912	-0.20445	-0.00011384	556.8430511809048	68.792	1.4692	68.792	68.463	69.933	0					64	28	4	0	0	0	0.0018556	1	24926	24926		148.27	41.169	1	43234000			26065	3768	18748	18888	25525	25525					0.11997382668369028
KLNDLIQRL	9	Unmodified	_KLNDLIQRL_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	A375_MHC_IP_R2	2	556.1913452148438	2	556.842948	1111.67134	-0.70084	-0.00039026	0.14476	8.0611E-05	-0.55608	-0.00030965	556.8430203974859	67.8	1.2192	68.535	68.204	69.423	0.73511					63	23	5	0	0	0	1.9127E-08	1	25686	25686		201.57	48.682	1	60522000			26066	3768	18748	18888	25526	25526					0.11997382668369028
KLNDLNSSV	9	Unmodified	_KLNDLNSSV_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6;ENST00000420752.1_1_10:50980319-50981214:+|nuORF	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MULTI-MSMS	A375_MHC_IP_R1	1	495.666259765625	2	495.266739	988.518924	-0.40505	-0.00020061	-0.30761	-0.00015235	-0.71266	-0.00035296	495.2665680928007	33.368	0.55816	33.368	32.989	33.547	0					17	10	2	0	0	0	0.017727	1	10909	10909		86.332	21.097	1	5433600			26067	1483	18749	18889	25527	25527					0.024205622009503713
KLNDLNSSV	9	Unmodified	_KLNDLNSSV_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6;ENST00000420752.1_1_10:50980319-50981214:+|nuORF	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	495.266739	988.518924	-0.5246	-0.00025982	-0.019209	-9.5135E-06	-0.54381	-0.00026933	495.2666543691656	32.593	0.81417	33.33	33.01	33.825	0.73692	-0.01874	0.00017112	NaN	86.332	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4948400			26068	1483	18749	18889							0.024205622009503713
KLNEMSYEL	9	Unmodified	_KLNEMSYEL_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-SECPEP	A375_MHC_IP_R1	1	564.1757202148438	2	563.776082	1125.53761	-0.44343	-0.00025	0.94297	0.00053162	0.49954	0.00028163	563.7764900673117	60.745	0.55885	60.745	60.414	60.973	0					20	10	3	0	0	0	0.6191	1	21885	21885		29.841	10.584	1	2165900			26069	8133	18750	18890	25528	25528					-0.02013644219505295
KLNGNLNNL	9	Unmodified	_KLNGNLNNL_					0	0	0			REV__ENST00000418041.5_1_1:81112250-81112304:+|nuORF	REV__ENST00000418041.5_1_1:81112250-81112304:+|nuORF	MSMS	A375_MHC_IP_R1	1	500.2211608886719	2	500.282723	998.550893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.569	1	27.569	27.069	28.069	0								0	0	0	0.15283	1	8382	8382		16.942	0	1		+		26070	24550	18751	18891	25529	25529					0.051559746747557256
KLNKWQKYFYY	11	Unmodified	_KLNKWQKYFYY_					0	0	0			REV__tr|U7SWQ5|U7SWQ5_FUSNU4-alpha-glucanotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01136PE=3SV=1	REV__tr|U7SWQ5|U7SWQ5_FUSNU4-alpha-glucanotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01136PE=3SV=1	MSMS	A375_MHC_IP_R2	2	527.6492309570312	3	527.613522	1579.81874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.779	1	83.522	83.022	84.022	0.74293								0	0	0	0.16297	1	31450	31450		1.3296	0.82369	1		+		26071	28606	18752	18892	25530	25530					0.05201854482515955
KLNNIGSFGD	10	Unmodified	_KLNNIGSFGD_					0	0	0			REV__ENSG00000186105|ENST00000334994|LRRC70	REV__ENSG00000186105|ENST00000334994|LRRC70	MULTI-MSMS	A375_MHC_IP_R1	1	532.692626953125	2	532.772188	1063.52982	-0.89942	-0.00047918	0.80951	0.00043129	-0.089902	-4.7897E-05	532.7727844964495	66.922	1.0738	66.922	66.478	67.552	0					52	20	4	0	0	0	0.50967	1	24253	24253		27.629	11.48	1	14317000	+		26072	21947	18753	18893	25531	25531					0.0005996457523451681
KLNPGIAYV	9	Unmodified	_KLNPGIAYV_					0	0	0		ENSG00000107021|ENST00000372648|TBC1D13;nc|ENSG00000107021|Q9NVG8-3|TBC1D13	ENSG00000107021|ENST00000372648|TBC1D13	ENSG00000107021|ENST00000372648|TBC1D13	MULTI-SECPEP	A375_MHC_IP_R1	1	488.4693908691406	2	487.78711	973.559667	-0.32944	-0.0001607	-0.61777	-0.00030134	-0.94721	-0.00046204	487.78718641223315	58.523	2.0323	58.523	57.313	59.346	0					56	39	2	0	0	0	0.10969	1	20980	20980		57.471	19.32	1	17081000			26073	2721	18754	18894	25532	25532					0.07182948311219661
KLNPGIAYV	9	Unmodified	_KLNPGIAYV_					0	0	0		ENSG00000107021|ENST00000372648|TBC1D13;nc|ENSG00000107021|Q9NVG8-3|TBC1D13	ENSG00000107021|ENST00000372648|TBC1D13	ENSG00000107021|ENST00000372648|TBC1D13	MULTI-SECPEP	A375_MHC_IP_R2	2	488.18658447265625	2	487.78711	973.559667	-0.90412	-0.00044102	-0.35835	-0.0001748	-1.2625	-0.00061582	487.7871831333785	57.6	1.4237	58.349	57.355	58.779	0.74894					39	27	2	0	0	0	0.061132	1	21744	21744		67.344	35.227	1	19051000			26074	2721	18754	18894	25533	25533					0.07182948311219661
KLNPQQFEV	9	Unmodified	_KLNPQQFEV_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;ENST00000525431.1_1_11:125476222-125478225:+|nuORF	ENSG00000134910|ENST00000392708|STT3A	ENSG00000134910|ENST00000392708|STT3A	MULTI-SECPEP	A375_MHC_IP_R1	1	552.1981811523438	2	551.798206	1101.58186	-0.53206	-0.00029359	0.11211	6.1861E-05	-0.41995	-0.00023173	551.7983265868371	57.441	2.6428	57.441	57.109	59.752	0					127	51	4	0	0	0	0.010788	1	20535	20535		155.03	92.453	1	398810000			26075	4626	18755	18895	25534	25534					0.035131279889810685
KLNPQQFEV	9	Unmodified	_KLNPQQFEV_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;ENST00000525431.1_1_11:125476222-125478225:+|nuORF	ENSG00000134910|ENST00000392708|STT3A	ENSG00000134910|ENST00000392708|STT3A	MULTI-SECPEP	A375_MHC_IP_R2	2	551.1943969726562	2	551.798206	1101.58186	-1.1785	-0.00065031	0.19172	0.00010579	-0.9868	-0.00054452	551.7983620243731	56.582	2.6956	57.332	56.948	59.644	0.75015					134	52	4	0	0	0	0.010893	1	21480	21480		147.06	84.486	1	344760000			26076	4626	18755	18895	25535	25535					0.035131279889810685
KLNSPTLSV	9	Unmodified	_KLNSPTLSV_					0	0	0		ENSG00000136152|ENST00000349995|COG3;nc|ENSG00000136152|Q96JB2-2|COG3	ENSG00000136152|ENST00000349995|COG3	ENSG00000136152|ENST00000349995|COG3	MULTI-SECPEP	A375_MHC_IP_R1	1	480.1816711425781	2	479.782025	957.549496	-0.10488	-5.0322E-05	-0.47517	-0.00022798	-0.58005	-0.0002783	479.78175137788253	48.248	0.50593	48.248	48.02	48.526	0					13	9	2	0	0	0	0.046478	1	16993	16993		92.653	17.724	1	7142800			26077	4758	18756	18896	25536	25536					0.0690234058599799
KLNSPTLSV	9	Unmodified	_KLNSPTLSV_					0	0	0		ENSG00000136152|ENST00000349995|COG3;nc|ENSG00000136152|Q96JB2-2|COG3	ENSG00000136152|ENST00000349995|COG3	ENSG00000136152|ENST00000349995|COG3	MULTI-MSMS	A375_MHC_IP_R2	2	480.1820373535156	2	479.782025	957.549496	-0.3845	-0.00018448	-0.82643	-0.00039651	-1.2109	-0.00058098	479.7820726110049	47.334	0.5602	48.095	47.766	48.326	0.76127					26	10	5	0	0	0	0.007896	1	17744	17744		129.77	33.661	1	9767700			26078	4758	18756	18896	25537	25537					0.0690234058599799
KLNSVCISC	9	Unmodified	_KLNSVCISC_					0	0	0		nc|ENSG00000150551|Q8N2G4-4|LYPD1;ENSG00000150551|ENST00000397463|LYPD1;nc|ENSG00000150551|Q8N2G4-3|LYPD1;nc|ENSG00000150551|Q8N2G4-2|LYPD1	nc|ENSG00000150551|Q8N2G4-4|LYPD1	nc|ENSG00000150551|Q8N2G4-4|LYPD1	MULTI-SECPEP	A375_MHC_IP_R2	2	483.132568359375	2	483.740988	965.467423	-0.54006	-0.00026125	1.4679	0.00071009	0.92786	0.00044884	483.741909077894	41.975	0.46059	42.749	42.555	43.016	0.77451					12	8	2	0	0	0	0.59614	1	15517	15517		28.495	27.013	1	1424300			26079	5849	18757	18897	25538	25538					-0.01669221088957329
KLNTKIPFD	9	Unmodified	_KLNTKIPFD_					0	0	0			REV__GCNT1|p.E228K|1|0.24|ENSG00000187210|chr9:76503063-76503063|G/A|missense_variant	REV__GCNT1|p.E228K|1|0.24|ENSG00000187210|chr9:76503063-76503063|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	359.88287353515625	3	359.209725	1074.60735	0.36086	0.00012963	1.1928	0.00042846	1.5536	0.00055808	359.2103366204103	48.067	1.0616	48.067	47.668	48.729	0					35	20	3	0	0	0	0.70886	1	16812	16812		3.8763	0	1	21470000	+		26080	26674	18758	18898	25539	25539					0.07302602511435907
KLPDVLNRL	9	Unmodified	_KLPDVLNRL_					0	0	0		nc|ENSG00000159921|Q9Y223-2|GNE;nc|ENSG00000159921|Q9Y223-5|GNE;nc|ENSG00000159921|Q9Y223-3|GNE;ENSG00000159921|ENST00000642385|GNE;nc|ENSG00000159921|Q9Y223-4|GNE	nc|ENSG00000159921|Q9Y223-2|GNE	nc|ENSG00000159921|Q9Y223-2|GNE	MULTI-SECPEP	A375_MHC_IP_R1	1	534.7321166992188	2	534.332216	1066.64988	-0.57729	-0.00030847	-0.29889	-0.00015971	-0.87618	-0.00046817	534.3320142397483	70.455	0.5125	70.455	70.185	70.698	0					16	9	2	0	0	0	0.77003	1	25588	25588		11.495	4.7715	1	2340900			26081	14706	18759	18899	25540	25540					0.11921997639660731
KLPDVLNRL	9	Unmodified	_KLPDVLNRL_					0	0	0		nc|ENSG00000159921|Q9Y223-2|GNE;nc|ENSG00000159921|Q9Y223-5|GNE;nc|ENSG00000159921|Q9Y223-3|GNE;ENSG00000159921|ENST00000642385|GNE;nc|ENSG00000159921|Q9Y223-4|GNE	nc|ENSG00000159921|Q9Y223-2|GNE	nc|ENSG00000159921|Q9Y223-2|GNE	MULTI-SECPEP	A375_MHC_IP_R2	2	534.73193359375	2	534.332216	1066.64988	-0.69325	-0.00037042	-0.12927	-6.9074E-05	-0.82252	-0.0004395	534.3319885915886	69.693	0.50887	70.428	70.031	70.54	0.73421					15	9	2	0	0	0	0.76452	1	26422	26422		12.241	4.0851	1	2032100			26082	14706	18759	18899	25541	25541					0.11921997639660731
KLPDVYGV	8	Unmodified	_KLPDVYGV_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-SECPEP	A375_MHC_IP_R2	2	446.1524658203125	2	445.752736	889.490919	-0.49229	-0.00021944	-0.047309	-2.1088E-05	-0.53959	-0.00024053	445.75279110215956	62.409	0.45925	63.152	62.874	63.333	0.74263					16	8	3	0	0	0	0.55372	1	23647	23647		48.346	3.9388	1	3612600			26083	9818	18760	18900	25542	25542					0.04175284011523672
KLPEAQQRV	9	Unmodified	_KLPEAQQRV_					0	0	0		nc|ENSG00000102606|Q14155-1|ARHGEF7;nc|ENSG00000102606|Q14155-5|ARHGEF7;ENSG00000102606|ENST00000646102|ARHGEF7;ENST00000483189.1_1_13:111893629-111928079:+|nuORF;nc|ENSG00000102606|Q14155-6|ARHGEF7;nc|ENSG00000102606|Q14155-2|ARHGEF7;nc|ENSG00000102606|Q14155-3|ARHGEF7;nc|ENSG00000102606|Q14155|ARHGEF7	nc|ENSG00000102606|Q14155-1|ARHGEF7	nc|ENSG00000102606|Q14155-1|ARHGEF7	MULTI-SECPEP	A375_MHC_IP_R1	1	535.0248413085938	2	534.811648	1067.60874	-0.7065	-0.00037785	0.079048	4.2276E-05	-0.62745	-0.00033557	534.8119117465066	19.938	0.20391	19.938	19.776	19.98	0					6	3	2	0	0	0	0.78753	1	5042	5042		4.897	4.897	1	1133600			26084	2386	18761	18901	25543	25543					0.07764236600178265
KLPEISHRL	9	Unmodified	_KLPEISHRL_					0	0	0		nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8	nc|ENSG00000107099|Q8NF50-2|DOCK8	nc|ENSG00000107099|Q8NF50-2|DOCK8	MULTI-SECPEP	A375_MHC_IP_R2	2	546.63720703125	2	546.82984	1091.64513	-1.102	-0.00060258	-0.35446	-0.00019383	-1.4564	-0.00079641	546.8293986038609	60.303	0.40986	61.048	60.801	61.211	0.74503					10	7	2	0	0	0	0.73008	1	22748	22748		12.241	1.4167	1	1707000			26085	2724	18762	18902	25544	25544					0.10297113496881138
KLPEKWESV	9	Unmodified	_KLPEKWESV_					0	0	0		ENST00000574823.5_1_16:11935494-11935832:-|nuORF;nc|ENSG00000171490|O76021-2|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;ENSG00000171490|ENST00000571133|RSL1D1	ENST00000574823.5_1_16:11935494-11935832:-|nuORF	ENST00000574823.5_1_16:11935494-11935832:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	558.708251953125	2	558.308406	1114.60226	-0.70355	-0.0003928	0.43346	0.000242	-0.2701	-0.0001508	558.308592462117	39.567	1.4732	39.567	39.136	40.609	0					73	28	4	0	0	0	0.65637	1	13740	13740		15.248	3.0078	1	162360000			26086	7608	18763	18903	25545	25545					0.04954298648794975
KLPEKWESV	9	Unmodified	_KLPEKWESV_					0	0	0		ENST00000574823.5_1_16:11935494-11935832:-|nuORF;nc|ENSG00000171490|O76021-2|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;ENSG00000171490|ENST00000571133|RSL1D1	ENST00000574823.5_1_16:11935494-11935832:-|nuORF	ENST00000574823.5_1_16:11935494-11935832:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	558.7081298828125	2	558.308406	1114.60226	-1.007	-0.00056224	0.19224	0.00010733	-0.8148	-0.00045491	558.308479039427	38.756	1.4261	39.53	39.2	40.626	0.77451					67	27	4	0	0	0	0.082569	1	14222	14222		64.927	32.141	1	128880000			26087	7608	18763	18903	25546	25546					0.04954298648794975
KLPEPSASL	9	Unmodified	_KLPEPSASL_					0	0	0		nc|ENSG00000136104|Q5TBB1-2|RNASEH2B;ENST00000495244.6_1_13:51502574-51530607:+|nuORF;ENSG00000136104|ENST00000336617|RNASEH2B	nc|ENSG00000136104|Q5TBB1-2|RNASEH2B	nc|ENSG00000136104|Q5TBB1-2|RNASEH2B	MULTI-MSMS	A375_MHC_IP_R2	2	471.66876220703125	2	471.26875	940.522947	-0.40937	-0.00019292	1.1508	0.00054235	0.74146	0.00034943	471.2688139243192	47.323	0.61125	48.084	47.715	48.326	0.76128					24	11	3	0	0	0	0.02559	1	17766	17766		78.728	20.049	1	3354400			26088	4750	18764	18904	25547	25547					0.05030651694653443
KLPEPSASL	9	Unmodified	_KLPEPSASL_					0	0	0		nc|ENSG00000136104|Q5TBB1-2|RNASEH2B;ENST00000495244.6_1_13:51502574-51530607:+|nuORF;ENSG00000136104|ENST00000336617|RNASEH2B	nc|ENSG00000136104|Q5TBB1-2|RNASEH2B	nc|ENSG00000136104|Q5TBB1-2|RNASEH2B	MULTI-MATCH	A375_MHC_IP_R1	1		2	471.26875	940.522947	-0.10324	-4.8655E-05	1.205	0.00056789	1.1018	0.00051923	471.2687108248487	48.117	0.6062	48.117	47.87	48.476	0	0.016262	2.6626E-05	NaN	78.728	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2479000			26089	4750	18764	18904							0.05030651694653443
KLPGKFRSAHQ	11	Unmodified	_KLPGKFRSAHQ_					0	0	0		ENST00000456373.1_1_10:54172458-54172827:+|nuORF	ENST00000456373.1_1_10:54172458-54172827:+|nuORF	ENST00000456373.1_1_10:54172458-54172827:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	423.97845458984375	3	423.578923	1267.71494	-0.2824	-0.00011962	-0.7725	-0.00032722	-1.0549	-0.00044684	423.57854928635015	27.942	0.5034	27.942	27.735	28.238	0					24	9	4	0	0	0	0.70017	1	8574	8574		15.538	0.58129	1	3920600			26090	12133	18765	18905	25548	25548					0.0917899216551632
KLPGSFIKI	9	Unmodified	_KLPGSFIKI_					0	0	0			REV__nc|ENSG00000006744|Q9BQ52-2|ELAC2	REV__nc|ENSG00000006744|Q9BQ52-2|ELAC2	MULTI-SECPEP	A375_MHC_IP_R1	1	501.187255859375	2	501.820953	1001.62735	-0.33453	-0.00016788	0.66417	0.0003333	0.32964	0.00016542	501.8211187286353	54.695	0.15175	54.695	54.619	54.771	0					4	2	2	0	0	0	0.78351	1	19561	19561		8.7454	1.4562	1	672330	+		26091	16144	18766	18906	25549	25549					0.12660398242030624
KLPIIIIKDRE	11	Unmodified	_KLPIIIIKDRE_					0	0	0			REV__tr|U7SJH9|U7SJH9_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02204PE=4SV=1	REV__tr|U7SJH9|U7SJH9_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02204PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	447.02197265625	3	446.622017	1336.84422	-0.1407	-6.284E-05	0.028578	1.2764E-05	-0.11212	-5.0077E-05	446.62205441321544	34.379	0.40358	34.379	34.154	34.557	0					14	7	2	0	0	0	0.73903	1	11367	11367		0.29564	0.29564	1	3937900	+		26092	28234	18767	18907	25550	25550					0.18927329004918647
KLPIIIIKDRE	11	Unmodified	_KLPIIIIKDRE_					0	0	0			REV__tr|U7SJH9|U7SJH9_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02204PE=4SV=1	REV__tr|U7SJH9|U7SJH9_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02204PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	446.1324157714844	3	446.622017	1336.84422	-0.1407	-6.284E-05	0.028578	1.2764E-05	-0.11212	-5.0077E-05	446.62205441321544	34.379	0.40358	34.379	34.154	34.557	0					14	7	2	0	0	0	1.0013	1	11334	11334		1.0136	0.93022	1	3937900	+		26093	28234	18767	18907	25551	25551					0.18927329004918647
KLPLTRNKVI	10	Unmodified	_KLPLTRNKVI_					0	0	0			REV__ENST00000559530.1_1_15:32058089-32058740:-|nuORF	REV__ENST00000559530.1_1_15:32058089-32058740:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	395.25921630859375	3	394.595802	1180.76558	-0.48088	-0.00018975	0.24916	9.8318E-05	-0.23172	-9.1435E-05	394.59597087116	20.451	1.2176	21.061	20.449	21.666	0.61029					49	23	3	0	0	0	0.7154	1	6429	6429		5.4027	1.2861	1	2655300	+		26094	26157	18768	18908	25552	25552					0.18242521490515173
KLPLVKRNI	9	Unmodified	_KLPLVKRNI_					0	0	0			REV__DNAH8|p.E3503K|1|0.3|ENSG00000124721|chr6:38929550-38929550|G/A|missense_variant	REV__DNAH8|p.E3503K|1|0.3|ENSG00000124721|chr6:38929550-38929550|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	541.6557006835938	2	540.866226	1079.7179	-0.75589	-0.00040884	-0.17519	-9.4757E-05	-0.93109	-0.0005036	540.8660982287805	79.04	0.35587	79.785	79.54	79.896	0.74474					9	6	2	0	0	0	0.78348	1	30013	30013		1.8442	1.2427	1	960300	+		26095	16018	18769	18909	25553	25553					0.18122867290298927
KLPNFGFVV	9	Unmodified	_KLPNFGFVV_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1;G3BP2|p.G369E|1|0.25|ENSG00000138757|chr4:75646408-75646408|C/T|missense_variant;nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MULTI-MSMS	A375_MHC_IP_R1	1	511.24420166015625	2	510.797478	1019.5804	-0.21323	-0.00010892	-0.38069	-0.00019445	-0.59392	-0.00030337	510.797236186835	107.42	0.66422	107.42	107.08	107.75	0					22	12	3	0	0	0	0.27715	1	39492	39492		32.305	0.18852	1	3213800			26096	5591	18770	18910	25554	25554					0.07139538690898917
KLPNFGFVV	9	Unmodified	_KLPNFGFVV_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1;G3BP2|p.G369E|1|0.25|ENSG00000138757|chr4:75646408-75646408|C/T|missense_variant;nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MULTI-SECPEP	A375_MHC_IP_R2	2	511.19757080078125	2	510.797478	1019.5804	-0.79971	-0.00040849	0.25451	0.00013	-0.54519	-0.00027848	510.79750383724445	106.53	0.66151	107.29	106.99	107.65	0.75977					24	12	3	0	0	0	0.1277	1	40251	40251		64.236	19.829	1	3158000			26097	5591	18770	18910	25555	25555					0.07139538690898917
KLPPVGSTA	9	Unmodified	_KLPPVGSTA_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	435.6581726074219	2	435.258185	868.501818	-0.43913	-0.00019114	0.23941	0.0001042	-0.19972	-8.6932E-05	435.2581976548396	29.287	1.268	29.287	28.339	29.607	0					40	24	2	0	0	0	0.094655	1	9208	9208		51.63	27.609	1	2807900			26098	9008	18771	18911	25556	25556					0.06230686385811168
KLPPVGSTA	9	Unmodified	_KLPPVGSTA_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	435.6578063964844	2	435.258185	868.501818	-0.5602	-0.00024383	0.10995	4.7857E-05	-0.45025	-0.00019597	435.2582003102037	28.274	0.96278	28.952	28.251	29.214	0.67857					27	18	2	0	0	0	0.021889	1	9799	9799		81.89	43.916	1	2012200			26099	9008	18771	18911	25557	25557					0.06230686385811168
KLPPVGSTA	9	Unmodified	_KLPPVGSTA_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MSMS	A375_MHC_IP_R2	2	435.179931640625	2	435.258185	868.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.203	1	29.902	29.402	30.402	0.69872								0	0	0	0.050211	1	10178	10178		53.833	23.196	1				26100	9008	18771	18911	25558	25558					0.06230686385811168
KLPPVVGI	8	Unmodified	_KLPPVVGI_					0	0	0		ENSG00000143479|ENST00000367109|DYRK3;nc|ENSG00000143479|O43781-2|DYRK3	ENSG00000143479|ENST00000367109|DYRK3	ENSG00000143479|ENST00000367109|DYRK3	MULTI-SECPEP	A375_MHC_IP_R1	1	412.17633056640625	2	411.776014	821.537475	0.27515	0.0001133	-0.072295	-2.9769E-05	0.20286	8.3533E-05	411.7759220007805	70.774	2.5904	70.774	69.529	72.119	0					80	50	2	0	0	0	0.27673	1	25729	25729		74.396	20.821	1	2648100			26101	5398	18772	18912	25559	25559					0.11956768633467618
KLPPVVGI	8	Unmodified	_KLPPVVGI_					0	0	0		ENSG00000143479|ENST00000367109|DYRK3;nc|ENSG00000143479|O43781-2|DYRK3	ENSG00000143479|ENST00000367109|DYRK3	ENSG00000143479|ENST00000367109|DYRK3	MULTI-SECPEP	A375_MHC_IP_R2	2	412.1759338378906	2	411.776014	821.537475	0.085229	3.5095E-05	-0.15466	-6.3684E-05	-0.069428	-2.8589E-05	411.77587176089895	69.599	2.5355	70.334	69.322	71.857	0.73421					81	49	2	0	0	0	0.19086	1	26412	26412		78.445	18.65	1	2512700			26102	5398	18772	18912	25560	25560					0.11956768633467618
KLPSFLANV	9	Unmodified	_KLPSFLANV_					0	0	0		nc|ENSG00000156958|Q01415-2|GALK2;ENSG00000156958|ENST00000560031|GALK2;ENST00000560119.5_1_15:49584731-49620353:+|nuORF	nc|ENSG00000156958|Q01415-2|GALK2	nc|ENSG00000156958|Q01415-2|GALK2	MULTI-SECPEP	A375_MHC_IP_R1	1	495.1686706542969	2	494.794935	987.575317	-0.14604	-7.2258E-05	-0.20093	-9.9422E-05	-0.34697	-0.00017168	494.7947580436743	92.997	1.0695	92.997	92.515	93.584	0					45	20	3	0	0	0	0.010874	1	34148	34148		149.91	84.679	1	8533100			26103	6219	18773	18913	25561	25561					0.08103234828274708
KLPSFLANV	9	Unmodified	_KLPSFLANV_					0	0	0		nc|ENSG00000156958|Q01415-2|GALK2;ENSG00000156958|ENST00000560031|GALK2;ENST00000560119.5_1_15:49584731-49620353:+|nuORF	nc|ENSG00000156958|Q01415-2|GALK2	nc|ENSG00000156958|Q01415-2|GALK2	MULTI-SECPEP	A375_MHC_IP_R2	2	495.16900634765625	2	494.794935	987.575317	-0.39384	-0.00019487	-0.0551	-2.7263E-05	-0.44894	-0.00022213	494.7949506957411	91.952	1.0127	92.691	92.278	93.291	0.73901					46	19	4	0	0	0	0.013591	1	35025	35025		118.07	55.496	1	9098500			26104	6219	18773	18913	25562	25562					0.08103234828274708
KLPSNLPQL	9	Unmodified	_KLPSNLPQL_					0	0	0		ENSG00000198301|ENST00000356260|SDAD1;ENST00000504975.1_1_4:76911880-76912009:-|nuORF	ENSG00000198301|ENST00000356260|SDAD1	ENSG00000198301|ENST00000356260|SDAD1	MULTI-MSMS	A375_MHC_IP_R1	1	505.7054138183594	2	505.305667	1008.59678	-0.25625	-0.00012949	-0.93466	-0.00047229	-1.1909	-0.00060177	505.30504861904285	70.396	0.87051	70.396	70.135	71.005	0					28	16	3	0	0	0	0.0099737	1	25553	25553		96.367	36.293	1	4492800			26105	9253	18774	18914	25563	25563					0.09282619856992369
KLPSNLPQL	9	Unmodified	_KLPSNLPQL_					0	0	0		ENSG00000198301|ENST00000356260|SDAD1;ENST00000504975.1_1_4:76911880-76912009:-|nuORF	ENSG00000198301|ENST00000356260|SDAD1	ENSG00000198301|ENST00000356260|SDAD1	MULTI-SECPEP	A375_MHC_IP_R2	2	505.70513916015625	2	505.305667	1008.59678	-0.62029	-0.00031344	-0.64984	-0.00032837	-1.2701	-0.00064181	505.30533773574234	69.552	0.76152	70.286	70.031	70.793	0.73421					33	14	3	0	0	0	0.074405	1	26342	26342		79.596	41.622	1	3909100			26106	9253	18774	18914	25564	25564					0.09282619856992369
KLPTPTPQV	9	Unmodified	_KLPTPTPQV_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-4|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-SECPEP	A375_MHC_IP_R1	1	491.19219970703125	2	490.792392	979.570232	-0.35902	-0.0001762	-0.25616	-0.00012572	-0.61517	-0.00030192	490.7922927431343	46.491	0.60487	46.491	46.195	46.799	0					24	11	3	0	0	0	0.011143	1	16303	16303		136.39	73.819	1	3556800			26107	1208	18775	18915	25565	25565					0.07962930965652504
KLPTPTPQV	9	Unmodified	_KLPTPTPQV_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-4|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-SECPEP	A375_MHC_IP_R2	2	491.1920166015625	2	490.792392	979.570232	-0.54515	-0.00026756	0.08413	4.129E-05	-0.46102	-0.00022627	490.79239273650967	45.613	0.70645	46.378	46.099	46.805	0.76519					19	13	2	0	0	0	0.011418	1	17065	17065		114.19	79.785	1	4201500			26108	1208	18775	18915	25566	25566					0.07962930965652504
KLPTPTSSV	9	Unmodified	_KLPTPTSSV_					0	0	0		nc|ENSG00000095787|Q9BTA9-3|WAC;nc|ENSG00000095787|Q9BTA9-2|WAC;ENSG00000095787|ENST00000354911|WAC	nc|ENSG00000095787|Q9BTA9-3|WAC	nc|ENSG00000095787|Q9BTA9-3|WAC	MULTI-MSMS	A375_MHC_IP_R1	1	465.66876220703125	2	465.26875	928.522947	-0.50796	-0.00023634	-0.32415	-0.00015082	-0.8321	-0.00038715	465.2687444894698	36.691	0.60642	36.691	36.389	36.996	0					20	11	2	0	0	0	0.0090297	1	12295	12295		99.755	38.398	1	3791300			26109	2049	18776	18916	25567	25567					0.05582651694658125
KLPTPTSSV	9	Unmodified	_KLPTPTSSV_					0	0	0		nc|ENSG00000095787|Q9BTA9-3|WAC;nc|ENSG00000095787|Q9BTA9-2|WAC;ENSG00000095787|ENST00000354911|WAC	nc|ENSG00000095787|Q9BTA9-3|WAC	nc|ENSG00000095787|Q9BTA9-3|WAC	MULTI-MSMS	A375_MHC_IP_R2	2	465.66851806640625	2	465.26875	928.522947	-0.80312	-0.00037367	-0.13009	-6.0528E-05	-0.93322	-0.0004342	465.2687782914142	35.864	0.55914	36.627	36.283	36.842	0.76338					18	10	2	0	0	0	0.015356	1	13012	13012		89.401	26.828	1	3932000			26110	2049	18776	18916	25568	25568					0.05582651694658125
KLPTRNTIISW	11	Unmodified	_KLPTRNTIISW_					0	0	0		ENSG00000109674|ENST00000264596|NEIL3	ENSG00000109674|ENST00000264596|NEIL3	ENSG00000109674|ENST00000264596|NEIL3	MULTI-MSMS	A375_MHC_IP_R2	2	443.67376708984375	3	443.59435	1327.76122	-0.55323	-0.00024541	-0.085744	-3.8035E-05	-0.63897	-0.00028344	443.594271215532	37.915	0.41218	38.69	38.483	38.895	0.77451					12	7	2	0	0	0	0.73715	1	13836	13836		2.084	0.34169	1	5511200			26111	2883	18777	18917	25569	25569					0.11045012276940724
KLPVKPGKR	9	Unmodified	_KLPVKPGKR_					0	0	0			REV__ENST00000535664.5_1_12:65720686-65847531:+|nuORF	REV__ENST00000535664.5_1_12:65720686-65847531:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1023.3170166015625	1	1022.68331	1021.67603	0.091954	9.404E-05	-4.2414	-0.0043376	-4.1494	-0.0042435	1022.6796209299147	119.39	0.2519	119.92	119.84	120.09	0.5321					5	4	2	0	0	0	0.81363	1	45444	45444		1.8442	1.1539	1	15034000	+		26112	25907	18778	18918	25570	25570					0.16606311601799462
KLQDAEIARL	10	Unmodified	_KLQDAEIARL_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-MSMS	A375_MHC_IP_R1	1	579.2379150390625	2	578.837862	1155.66117	-0.018938	-1.0962E-05	0.0073002	4.2256E-06	-0.011638	-6.7364E-06	578.8377723389731	44.242	0.4097	44.242	44.061	44.471	0					14	7	3	0	0	0	0.24209	1	15449	15449		44.945	22.208	1	3376400			26113	9212	18779	18919	25571	25571					0.08956774943112578
KLQDAEIARL	10	Unmodified	_KLQDAEIARL_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-MSMS	A375_MHC_IP_R1	1	386.6277770996094	3	386.227667	1155.66117	0.41221	0.00015921	0.23485	9.0704E-05	0.64706	0.00024991	386.2277419389044	44.254	0.35896	44.254	44.061	44.42	0					14	6	3	0	0	0	0.59037	1	15465	15465		19.144	3.6055	1	1762600			26114	9212	18779	18919	25572	25572					0.08956774943112578
KLQDAEIARL	10	Unmodified	_KLQDAEIARL_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-MATCH	A375_MHC_IP_R2	2		2	578.837862	1155.66117	-0.094367	-5.4623E-05	-0.30244	-0.00017506	-0.39681	-0.00022969	578.8376918114134	43.332	0.40557	44.105	43.876	44.282	0.7724	-0.068543	-0.00025874	NaN	44.945	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2019200			26115	9212	18779	18919							0.08956774943112578
KLQDAEIARL	10	Unmodified	_KLQDAEIARL_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-MATCH	A375_MHC_IP_R2	2		3	386.227667	1155.66117	0.0080302	3.1015E-06	0.65545	0.00025315	0.66348	0.00025625	386.2277687767251	43.308	0.40631	44.08	43.926	44.333	0.7724	-0.087218	0.00043118	NaN	19.144	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2319100			26116	9212	18779	18919							0.08956774943112578
KLQDGLLHI	9	Unmodified	_KLQDGLLHI_					0	0	0		ENSG00000102265|ENST00000218388|TIMP1;ENST00000456754.6_1_X:47444724-47445414:+|nuORF	ENSG00000102265|ENST00000218388|TIMP1	ENSG00000102265|ENST00000218388|TIMP1	MULTI-SECPEP	A375_MHC_IP_R1	1	519.2109375	2	518.811116	1035.60768	-0.48276	-0.00025046	-0.15299	-7.9375E-05	-0.63575	-0.00032983	518.8109704515057	63.491	0.86693	63.491	63.223	64.09	0					38	16	4	0	0	0	0.046478	1	22905	22905		82.529	6.7685	1	18820000			26117	2368	18780	18920	25573	25573					0.09130022231283874
KLQDGLLHI	9	Unmodified	_KLQDGLLHI_					0	0	0		ENSG00000102265|ENST00000218388|TIMP1;ENST00000456754.6_1_X:47444724-47445414:+|nuORF	ENSG00000102265|ENST00000218388|TIMP1	ENSG00000102265|ENST00000218388|TIMP1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.2105102539062	2	518.811116	1035.60768	-0.77826	-0.00040377	0.0035024	1.8171E-06	-0.77476	-0.00040195	518.8110725087612	62.467	0.8112	63.21	62.976	63.788	0.74263					32	15	3	0	0	0	0.011405	1	23642	23642		99.755	23.994	1	21137000			26118	2368	18780	18920	25574	25574					0.09130022231283874
KLQDGVHII	9	Unmodified	_KLQDGVHII_					0	0	0		nc|ENSG00000183520|Q9Y3A2-2|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;ENSG00000183520|ENST00000373014|UTP11	nc|ENSG00000183520|Q9Y3A2-2|UTP11	nc|ENSG00000183520|Q9Y3A2-2|UTP11	MULTI-SECPEP	A375_MHC_IP_R1	1	512.2030029296875	2	511.803291	1021.59203	-0.5256	-0.000269	-0.068561	-3.509E-05	-0.59416	-0.00030409	511.8032584466359	46.469	0.65565	46.469	46.195	46.85	0					25	12	3	0	0	0	0.04038	1	16297	16297		75.761	21.928	1	12813000			26119	8502	18781	18921	25575	25575					0.08209735714228827
KLQDGVHII	9	Unmodified	_KLQDGVHII_					0	0	0		nc|ENSG00000183520|Q9Y3A2-2|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;ENSG00000183520|ENST00000373014|UTP11	nc|ENSG00000183520|Q9Y3A2-2|UTP11	nc|ENSG00000183520|Q9Y3A2-2|UTP11	MULTI-SECPEP	A375_MHC_IP_R2	2	512.2027587890625	2	511.803291	1021.59203	-0.77675	-0.00039754	-0.24925	-0.00012757	-1.026	-0.00052511	511.80333732134324	45.563	0.75733	46.328	45.997	46.755	0.76519					26	14	3	0	0	0	0.011107	1	17001	17001		110.67	25.033	1	13518000			26120	8502	18781	18921	25576	25576					0.08209735714228827
KLQEANAQL	9	Unmodified	_KLQEANAQL_					0	0	0		ENSG00000131899|ENST00000316843|LLGL1	ENSG00000131899|ENST00000316843|LLGL1	ENSG00000131899|ENST00000316843|LLGL1	MULTI-MSMS	A375_MHC_IP_R1	1	508.18206787109375	2	507.782556	1013.55056	-0.59959	-0.00030446	0.021642	1.0989E-05	-0.57795	-0.00029347	507.7823607048024	28.935	0.4046	28.935	28.745	29.149	0					18	7	3	0	0	0	0.018261	1	9008	9008		85.642	23.069	1	4598500			26121	4355	18782	18922	25577	25577					0.04432554954883017
KLQEELNKV	9	Unmodified	_KLQEELNKV_					0	0	0		nc|ENSG00000072571|O75330-4|HMMR;nc|ENSG00000072571|O75330-2|HMMR;nc|ENSG00000072571|O75330|HMMR;ENSG00000072571|ENST00000393915|HMMR	nc|ENSG00000072571|O75330-4|HMMR	nc|ENSG00000072571|O75330-4|HMMR	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2185668945312	2	550.819138	1099.62372	-0.49575	-0.00027307	1.8655	0.0010275	1.3697	0.00075448	550.8188989964508	28.509	0.45612	28.509	28.238	28.694	0					19	8	3	0	0	0	0.023846	1	8814	8814		104.48	51.08	1	6332600			26122	1540	18783	18923	25578	25578					0.07789683677492576
KLQEELNKV	9	Unmodified	_KLQEELNKV_					0	0	0		nc|ENSG00000072571|O75330-4|HMMR;nc|ENSG00000072571|O75330-2|HMMR;nc|ENSG00000072571|O75330|HMMR;ENSG00000072571|ENST00000393915|HMMR	nc|ENSG00000072571|O75330-4|HMMR	nc|ENSG00000072571|O75330-4|HMMR	MULTI-SECPEP	A375_MHC_IP_R2	2	551.2189331054688	2	550.819138	1099.62372	-0.79403	-0.00043737	0.12857	7.0821E-05	-0.66546	-0.00036655	550.8192306532336	27.795	0.35404	28.474	28.301	28.655	0.67857					14	6	3	0	0	0	0.054506	1	9547	9547		91.085	39.67	1	6435400			26123	1540	18783	18923	25579	25579					0.07789683677492576
KLQEEVKDLRA	11	Unmodified	_KLQEEVKDLRA_					0	0	0		ENSG00000090060|ENST00000216277|PAPOLA;nc|ENSG00000090060|P51003-2|PAPOLA;ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000090060|ENST00000216277|PAPOLA;ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000090060|ENST00000216277|PAPOLA	MSMS	A375_MHC_IP_R1	1	443.66082763671875	3	443.589265	1327.74596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.399	1	27.399	26.899	27.899	0								0	0	0	0.15422	1	8306	8306		11.271	2.6439	1				26124	1943;9658	18784	18924	25580	25580					0.09520100689064748
KLQEFLQTL	9	Unmodified	_KLQEFLQTL_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|457|18.28|0.76|4.59|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI;chr15:89244044-89247629|441|10.02|0.6|4.05|+|ENST00000565255|FANCI,FANCI;nc|ENSG00000140525|Q9NVI1-4|FANCI;ENST00000568670.5_1_15:89790878-89801939:+|nuORF;ENST00000570110.1_1_15:89790878-89802018:+|nuORF	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-SECPEP	A375_MHC_IP_R1	1	560.5037841796875	2	560.324057	1118.63356	-0.62846	-0.00035214	0.16056	8.9965E-05	-0.46791	-0.00026218	560.3241238816598	91.224	1.1621	91.224	90.845	92.007	0					72	22	5	0	0	0	4.0214E-14	1	33533	33533		241.96	120.43	1	111330000			26125	440	18785	18925	25581	25581					0.07898871682891695
KLQEFLQTL	9	Unmodified	_KLQEFLQTL_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|457|18.28|0.76|4.59|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI;chr15:89244044-89247629|441|10.02|0.6|4.05|+|ENST00000565255|FANCI,FANCI;nc|ENSG00000140525|Q9NVI1-4|FANCI;ENST00000568670.5_1_15:89790878-89801939:+|nuORF;ENST00000570110.1_1_15:89790878-89802018:+|nuORF	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-SECPEP	A375_MHC_IP_R2	2	560.146240234375	2	560.324057	1118.63356	-0.54995	-0.00030815	-2.7665	-0.0015501	-3.3164	-0.0018583	560.3225320601784	91.311	0.76074	92.046	91.666	92.427	0.7345					25	14	2	0	0	0	0.30925	1	34721	34721		49.554	13.048	1	5233800			26126	440	18785	18925	25582	25582					0.07898871682891695
KLQEFLQTL	9	Unmodified	_KLQEFLQTL_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|457|18.28|0.76|4.59|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI;chr15:89244044-89247629|441|10.02|0.6|4.05|+|ENST00000565255|FANCI,FANCI;nc|ENSG00000140525|Q9NVI1-4|FANCI;ENST00000568670.5_1_15:89790878-89801939:+|nuORF;ENST00000570110.1_1_15:89790878-89802018:+|nuORF	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-SECPEP	A375_MHC_IP_R2	2	560.9727172851562	2	560.324057	1118.63356	-0.5381	-0.00030151	0.030259	1.6955E-05	-0.50785	-0.00028456	560.3240567122032	90.293	1.1171	91.025	90.597	91.714	0.7318					69	21	5	0	0	0	0.008833	1	34409	34409		147.06	47.304	1	73819000			26127	440	18785	18925	25583	25583					0.07898871682891695
KLQEFLQTL	9	Unmodified	_KLQEFLQTL_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|457|18.28|0.76|4.59|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI;chr15:89244044-89247629|441|10.02|0.6|4.05|+|ENST00000565255|FANCI,FANCI;nc|ENSG00000140525|Q9NVI1-4|FANCI;ENST00000568670.5_1_15:89790878-89801939:+|nuORF;ENST00000570110.1_1_15:89790878-89802018:+|nuORF	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MATCH	A375_MHC_IP_R1	1		2	560.324057	1118.63356	-0.30593	-0.00017142	-3.1416	-0.0017603	-3.4475	-0.0019317	560.322399149338	92.378	1.1168	92.378	91.906	93.023	0	0.16611	-0.00016693	NaN	49.554	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4610000			26128	440	18785	18925							0.07898871682891695
KLQEIENAI	9	Unmodified	_KLQEIENAI_					0	0	0		ENSG00000151474|ENST00000357447|FRMD4A;nc|ENSG00000114541|Q9Y2L6-2|FRMD4B;ENSG00000114541|ENST00000398540|FRMD4B	ENSG00000151474|ENST00000357447|FRMD4A;nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	MULTI-SECPEP	A375_MHC_IP_R1	1	529.69775390625	2	529.298039	1056.58152	-0.70119	-0.00037114	0.052622	2.7853E-05	-0.64857	-0.00034329	529.2979755679654	53.09	0.70904	53.09	52.796	53.505	0					23	13	2	0	0	0	0.13208	1	18897	18897		57.722	15.766	1	2702200			26129	3228;5910	18786	18926	25584	25584					0.0554970826913177
KLQEIENAI	9	Unmodified	_KLQEIENAI_					0	0	0		ENSG00000151474|ENST00000357447|FRMD4A;nc|ENSG00000114541|Q9Y2L6-2|FRMD4B;ENSG00000114541|ENST00000398540|FRMD4B	ENSG00000151474|ENST00000357447|FRMD4A;nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	MULTI-MSMS	A375_MHC_IP_R2	2	529.6973266601562	2	529.298039	1056.58152	-0.95625	-0.00050614	-0.36867	-0.00019514	-1.3249	-0.00070128	529.2978836787707	52.273	0.70901	53.026	52.78	53.489	0.75225					21	13	2	0	0	0	0.06083	1	19702	19702		60.074	20.124	1	2664700			26130	3228;5910	18786	18926	25585	25585					0.0554970826913177
KLQEKIYFA	9	Unmodified	_KLQEKIYFA_					0	0	0		ENSG00000198963|ENST00000376896|RORB;nc|ENSG00000198963|Q92753|RORB	ENSG00000198963|ENST00000376896|RORB	ENSG00000198963|ENST00000376896|RORB	MULTI-SECPEP	A375_MHC_IP_R2	2	570.666748046875	2	570.326599	1138.63865	-0.44917	-0.00025617	0.92573	0.00052797	0.47656	0.00027179	570.3269411031998	44.799	0.35968	45.569	45.39	45.75	0.7691					9	6	2	0	0	0	0.73577	1	16755	16755		19.362	7.7216	1	1472200			26131	9385	18787	18927	25586	25586					0.07487175545520586
KLQEKVELL	9	Unmodified	_KLQEKVELL_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-SECPEP	A375_MHC_IP_R1	1	550.7391967773438	2	550.339707	1098.66486	-0.53884	-0.00029655	0.026622	1.4651E-05	-0.51222	-0.0002819	550.339662891407	47.391	0.55897	47.391	47.159	47.718	0					19	10	3	0	0	0	0.040539	1	16658	16658		91.085	10.409	1	10266000			26132	6157	18788	18928	25587	25587					0.1194744471699778
KLQEKVELL	9	Unmodified	_KLQEKVELL_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	A375_MHC_IP_R2	2	367.62896728515625	3	367.228897	1098.66486	0.27346	0.00010042	-0.25218	-9.2609E-05	0.021275	7.8129E-06	367.22868988695694	46.367	0.76152	47.133	46.805	47.567	0.76519					25	14	3	0	0	0	0.1915	1	17391	17391		38.615	3.6827	1	3741300			26133	6157	18788	18928	25588	25588					0.1194744471699778
KLQEKVELL	9	Unmodified	_KLQEKVELL_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-SECPEP	A375_MHC_IP_R2	2	550.7392578125	2	550.339707	1098.66486	-0.66321	-0.00036499	0.10608	5.838E-05	-0.55713	-0.00030661	550.3397026005296	46.395	0.45849	47.16	46.906	47.364	0.76518					21	8	3	0	0	0	0.040539	1	17366	17366		100.71	31.604	1	6653300			26134	6157	18788	18928	25589	25589					0.1194744471699778
KLQEKVELL	9	Unmodified	_KLQEKVELL_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	367.228897	1098.66486	0.26364	9.6817E-05	-0.05148	-1.8905E-05	0.21216	7.7912E-05	367.2288644652044	47.406	0.71501	47.406	47.003	47.718	0	0.13658	7.522E-05	NaN	38.615	23	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5994900			26135	6157	18788	18928							0.1194744471699778
KLQELHALY	9	Unmodified	_KLQELHALY_					0	0	0			REV__ENSG00000162645|ENST00000370466|GBP2	REV__ENSG00000162645|ENST00000370466|GBP2	MULTI-MSMS	A375_MHC_IP_R1	1	372.61322021484375	3	372.213358	1113.61824	0.54725	0.00020369	-0.24272	-9.0343E-05	0.30453	0.00011335	372.21316314102444	42.81	0.40537	42.81	42.587	42.993	0					16	7	3	0	0	0	0.72761	1	14892	14892		4.5289	0.93237	1	1934700	+		26136	20285	18789	18929	25590	25590					0.06598004885699993
KLQELIKEV	9	Unmodified	_KLQELIKEV_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;nc|ENSG00000157107|Q0JRZ9-2|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6166381835938	2	550.339707	1098.66486	-1.1739	-0.00064606	0.075811	4.1722E-05	-1.0981	-0.00060434	550.339713371127	52.305	0.45345	53.057	52.831	53.285	0.75225					11	8	2	0	0	0	0.31976	1	19709	19709		31.636	12.01	1	2577400			26137	6229	18790	18930	25591	25591					0.1194744471699778
KLQELNYNL	9	Unmodified	_KLQELNYNL_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	568.2113647460938	2	567.811313	1133.60807	-0.24235	-0.00013761	-0.89605	-0.00050879	-1.1384	-0.00064639	567.8103821540507	62.669	1.1267	62.669	62.097	63.223	0					35	21	3	0	0	0	0.016309	1	22652	22652		103.35	47.851	1	4590000			26138	3306	18791	18931	25592	25592					0.04661397160452907
KLQELNYNL	9	Unmodified	_KLQELNYNL_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-SECPEP	A375_MHC_IP_R2	2	568.2106323242188	2	567.811313	1133.60807	-0.62862	-0.00035694	-1.3508	-0.00076701	-1.9794	-0.0011239	567.810175682071	61.869	1.1123	62.611	62.068	63.18	0.74263					39	21	3	0	0	0	0.046478	1	23484	23484		72.968	29.196	1	5307600			26139	3306	18791	18931	25593	25593					0.04661397160452907
KLQEQIFHL	9	Unmodified	_KLQEQIFHL_					0	0	0		ENST00000470876.1_1_5:133900168-133909634:+|nuORF;nc|ENSG00000043143|Q9NQC1-3|JADE2;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;ENSG00000043143|ENST00000681547|JADE2	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	386.2889099121094	3	385.888874	1154.64479	0.084542	3.2624E-05	0.49193	0.00018983	0.57647	0.00022245	385.88896787636895	66.097	0.60835	66.097	65.819	66.428	0					24	11	3	0	0	0	0.4261	1	23946	23946		22.658	17.255	1	2799500			26140	1179	18792	18932	25594	25594					0.07365693777023807
KLQEQIFHL	9	Unmodified	_KLQEQIFHL_					0	0	0		ENST00000470876.1_1_5:133900168-133909634:+|nuORF;nc|ENSG00000043143|Q9NQC1-3|JADE2;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;ENSG00000043143|ENST00000681547|JADE2	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	578.7296142578125	2	578.329673	1154.64479	-0.35334	-0.00020435	0.29878	0.00017279	-0.054568	-3.1558E-05	578.3299145318223	66.097	0.45535	66.097	65.819	66.275	0					15	8	2	0	0	0	0.090157	1	23948	23948		51.415	31.001	1	2868500			26141	1179	18792	18932	25595	25595					0.07365693777023807
KLQEQIFHL	9	Unmodified	_KLQEQIFHL_					0	0	0		ENST00000470876.1_1_5:133900168-133909634:+|nuORF;nc|ENSG00000043143|Q9NQC1-3|JADE2;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;ENSG00000043143|ENST00000681547|JADE2	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	578.72900390625	2	578.329673	1154.64479	-0.2652	-0.00015337	-0.32376	-0.00018724	-0.58896	-0.00034062	578.3296034907389	65.067	0.45652	65.805	65.562	66.018	0.73811					19	8	3	0	0	0	0.090157	1	24661	24661		76.825	38.649	1	2575000			26142	1179	18792	18932	25596	25596					0.07365693777023807
KLQEQIHRV	9	Unmodified	_KLQEQIHRV_					0	0	0		ENSG00000133858|ENST00000378743|ZFC3H1;nc|ENSG00000133858|O60293-2|ZFC3H1	ENSG00000133858|ENST00000378743|ZFC3H1	ENSG00000133858|ENST00000378743|ZFC3H1	MULTI-SECPEP	A375_MHC_IP_R1	1	384.6278991699219	3	384.22789	1149.66184	0.11146	4.2826E-05	-0.23398	-8.99E-05	-0.12251	-4.7073E-05	384.22765132687977	19.279	0.29092	19.279	19.23	19.521	0					14	6	3	0	0	0	0.091861	1	4799	4799		79.427	45.982	1	20411000			26143	4533	18793	18933	25597	25597					0.09299614382825894
KLQEQLAQL	9	Unmodified	_KLQEQLAQL_					0	0	0		ENSG00000184428|ENST00000329245|TOP1MT;nc|ENSG00000184428|Q969P6-2|TOP1MT;ENST00000517857.1_1_8:144391613-144392452:-|nuORF	ENSG00000184428|ENST00000329245|TOP1MT	ENSG00000184428|ENST00000329245|TOP1MT	MULTI-SECPEP	A375_MHC_IP_R1	1	536.2135009765625	2	535.813856	1069.61316	-0.69469	-0.00037223	-0.32863	-0.00017609	-1.0233	-0.00054831	535.8136413636981	55.41	0.56065	55.41	55.126	55.687	0					23	10	4	0	0	0	0.04038	1	19803	19803		96.111	27.006	1	4182900			26144	8583	18794	18934	25598	25598					0.08113701023080466
KLQEQLAQL	9	Unmodified	_KLQEQLAQL_					0	0	0		ENSG00000184428|ENST00000329245|TOP1MT;nc|ENSG00000184428|Q969P6-2|TOP1MT;ENST00000517857.1_1_8:144391613-144392452:-|nuORF	ENSG00000184428|ENST00000329245|TOP1MT	ENSG00000184428|ENST00000329245|TOP1MT	MULTI-SECPEP	A375_MHC_IP_R2	2	536.213134765625	2	535.813856	1069.61316	-1.0503	-0.00056274	0.04465	2.3924E-05	-1.0056	-0.00053882	535.813746508224	54.496	0.50599	55.247	54.967	55.473	0.75075					17	9	3	0	0	0	0.046478	1	20575	20575		92.653	13.057	1	4722000			26145	8583	18794	18934	25599	25599					0.08113701023080466
KLQEQLPELL	10	Unmodified	_KLQEQLPELL_					0	0	0		nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2	nc|ENSG00000135775|Q14746-2|COG2	nc|ENSG00000135775|Q14746-2|COG2	MULTI-SECPEP	A375_MHC_IP_R1	1	404.30450439453125	3	404.239573	1209.69689	-0.70185	-0.00028372	-0.51999	-0.0002102	-1.2218	-0.00049392	404.23929240754427	66.825	0.51053	66.825	66.58	67.091	0					14	9	2	0	0	0	0.74754	1	24191	24191		14.957	0	1	1684100			26146	4712	18795	18935	25600	25600					0.10042812400138246
KLQEVLDYL	9	Unmodified	_KLQEVLDYL_					0	0	0		nc|ENSG00000144744|Q8TBC4-2|UBA3;ENSG00000144744|ENST00000361055|UBA3	nc|ENSG00000144744|Q8TBC4-2|UBA3	nc|ENSG00000144744|Q8TBC4-2|UBA3	MULTI-SECPEP	A375_MHC_IP_R1	1	561.2158813476562	2	560.816064	1119.61758	-0.47025	-0.00026372	0.011186	6.2732E-06	-0.45906	-0.00025745	560.8161431825762	99.036	0.86606	99.036	98.607	99.473	0					35	16	3	0	0	0	0.01128	1	36350	36350		114.65	32.759	1	5811800			26147	5513	18796	18936	25601	25601					0.0625516544596394
KLQGKEAVK	9	Unmodified	_KLQGKEAVK_					0	0	0		ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81	ENSG00000167716|ENST00000409644|WDR81	ENSG00000167716|ENST00000409644|WDR81	MULTI-MSMS	A375_MHC_IP_R2	2	500.71331787109375	2	500.811116	999.60768	-0.62426	-0.00031264	0.93635	0.00046893	0.31209	0.0001563	500.81168593029264	39.683	0.86237	40.458	40.169	41.031	0.77451					45	16	4	0	0	0	0.070818	1	14725	14725		56.177	10.477	1	51949000			26148	7216	18797	18937	25602	25602					0.10786022231263814
KLQKITQEL	9	Unmodified	_KLQKITQEL_					0	0	0			REV__KIAA1217|p.E1677K|2|0.33|ENSG00000120549|chr10:24544299-24544299|G/A|missense_variant	REV__KIAA1217|p.E1677K|2|0.33|ENSG00000120549|chr10:24544299-24544299|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2083129882812	2	550.837331	1099.66011	-0.85394	-0.00047038	0.22365	0.00012319	-0.6303	-0.00034719	550.8373836052206	67.098	1.0188	67.098	66.836	67.854	0					34	19	2	0	0	0	0.50702	1	24495	24495		32.305	9.5692	1	2099500	+		26149	26842	18798	18938	25603	25603					0.11426560574227551
KLQKITQEL	9	Unmodified	_KLQKITQEL_					0	0	0			REV__KIAA1217|p.E1677K|2|0.33|ENSG00000120549|chr10:24544299-24544299|G/A|missense_variant	REV__KIAA1217|p.E1677K|2|0.33|ENSG00000120549|chr10:24544299-24544299|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	551.2084350585938	2	550.837331	1099.66011	-0.88435	-0.00048713	0.037964	2.0912E-05	-0.84638	-0.00046622	550.8371935367463	66.72	0.35689	67.456	67.189	67.546	0.73631					16	6	3	0	0	0	0.47368	1	25282	25282		34.102	5.0209	1	1410000	+		26150	26842	18798	18938	25604	25604					0.11426560574227551
KLQKVDFLY	9	Unmodified	_KLQKVDFLY_					0	0	0			REV__ENST00000534600.5_1_11:43340331-43342446:+|nuORF	REV__ENST00000534600.5_1_11:43340331-43342446:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	385.62518310546875	3	385.225375	1152.6543	0.48112	0.00018534	0.31472	0.00012124	0.79584	0.00030658	385.2254963371532	42.866	0.65916	42.866	42.487	43.146	0					18	12	2	0	0	0	0.66474	1	14890	14890		10.151	0.6066	1	2012200	+		26151	25890	18799	18939	25605	25605					0.08407462062564264
KLQKVDFLY	9	Unmodified	_KLQKVDFLY_					0	0	0			REV__ENST00000534600.5_1_11:43340331-43342446:+|nuORF	REV__ENST00000534600.5_1_11:43340331-43342446:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	385.225375	1152.6543	0.48112	0.00018534	0.31472	0.00012124	0.79584	0.00030658	385.2254963371532	42.866	0.65916	42.866	42.487	43.146	0	0.10787	-0.00024861	NaN	10.151	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2012200	+		26152	25890	18799	18939							0.08407462062564264
KLQKVDFLY	9	Unmodified	_KLQKVDFLY_					0	0	0			REV__ENST00000534600.5_1_11:43340331-43342446:+|nuORF	REV__ENST00000534600.5_1_11:43340331-43342446:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	385.225375	1152.6543	-0.091342	-3.5187E-05	0.6384	0.00024593	0.54706	0.00021074	385.22569470793945	41.876	0.40833	42.651	42.504	42.913	0.77451	-0.10787	0.00012545	NaN	10.151	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2402100	+		26153	25890	18799	18939							0.08407462062564264
KLQLPAGL	8	Unmodified	_KLQLPAGL_					0	0	0		ENSG00000148468|ENST00000378116|FAM171A1	ENSG00000148468|ENST00000378116|FAM171A1	ENSG00000148468|ENST00000378116|FAM171A1	MULTI-MSMS	A375_MHC_IP_R1	1	420.6710205078125	2	420.271096	838.527639	0.11252	4.7288E-05	-0.17491	-7.351E-05	-0.062393	-2.6222E-05	420.270976998758	61.854	0.40942	61.854	61.636	62.046	0					12	7	2	0	0	0	0.77488	1	22341	22341		13.508	0.97634	1	2624800			26154	5743	18800	18940	25606	25606					0.1019158062807719
KLQLQEPEY	9	Unmodified	_KLQLQEPEY_					0	0	0		nc|ENSG00000143257|Q14994-9|NR1I3;nc|ENSG00000143257|Q14994-10|NR1I3;nc|ENSG00000143257|Q14994-11|NR1I3;nc|ENSG00000143257|Q14994-5|NR1I3;nc|ENSG00000143257|Q14994-6|NR1I3;nc|ENSG00000143257|Q14994-12|NR1I3;nc|ENSG00000143257|Q14994-13|NR1I3;ENSG00000143257|ENST00000367983|NR1I3;nc|ENSG00000143257|Q14994|NR1I3;nc|ENSG00000143257|Q14994-8|NR1I3	nc|ENSG00000143257|Q14994-9|NR1I3	nc|ENSG00000143257|Q14994-9|NR1I3	MULTI-MSMS	A375_MHC_IP_R2	2	574.7138061523438	2	574.303321	1146.59209	-0.51723	-0.00029705	-1.5726	-0.00090312	-2.0898	-0.0012002	574.303018571308	38.741	1.222	39.516	39.047	40.269	0.77451					42	23	3	0	0	0	0.6324	1	14378	14378		13.042	2.243	1	8327100			26155	5362	18801	18941	25607	25607					0.024656909235773128
KLQLRIIKY	9	Unmodified	_KLQLRIIKY_					0	0	0		ENST00000533900.1_1_11:12023572-12030129:-|nuORF	ENST00000533900.1_1_11:12023572-12030129:-|nuORF	ENST00000533900.1_1_11:12023572-12030129:-|nuORF	MSMS	A375_MHC_IP_R1	1	587.7271728515625	2	587.887158	1173.75976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.026	1	83.026	82.526	83.526	0								0	0	0	0.15486	1	30372	30372		2.0598	0.57785	1				26156	13206	18802	18942	25608	25608					0.17983422978818453
KLQLYVSTI	9	Unmodified	_KLQLYVSTI_					0	0	0			REV__nc|ENSG00000198003|A5D8V7-2|ODAD3	REV__nc|ENSG00000198003|A5D8V7-2|ODAD3	MULTI-SECPEP	A375_MHC_IP_R2	2	533.193359375	2	532.82115	1063.62775	-0.92284	-0.00049171	-0.36695	-0.00019552	-1.2898	-0.00068722	532.8208735366401	54.47	0.50599	55.221	54.967	55.473	0.75075					15	9	2	0	0	0	0.63749	1	20532	20532		11.495	0	1	1682400	+		26157	22335	18803	18943	25609	25609					0.0984777317123644
KLQPVLRKL	9	Unmodified	_KLQPVLRKL_					0	0	0		nc|ENSG00000188916|Q6ZSG2-2|INSYN2A;ENSG00000188916|ENST00000522781|INSYN2A	nc|ENSG00000188916|Q6ZSG2-2|INSYN2A	nc|ENSG00000188916|Q6ZSG2-2|INSYN2A	MULTI-MSMS	A375_MHC_IP_R1	1	366.2427673339844	3	365.585126	1093.73355	-0.008405	-3.0727E-06	0.3315	0.00012119	0.3231	0.00011812	365.58529328747125	39.781	0.60735	39.781	39.391	39.999	0					24	11	3	0	0	0	0.66474	1	13640	13640		10.151	2.2052	1	1917200			26158	8947	18804	18944	25610	25610					0.19043153807365343
KLQQALTQL	9	Unmodified	_KLQQALTQL_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	MULTI-SECPEP	A375_MHC_IP_R2	2	522.2157592773438	2	521.816399	1041.61824	-1.119	-0.00058393	0.14433	7.5315E-05	-0.9747	-0.00050861	521.8164589909718	53.576	0.56292	54.327	54.046	54.609	0.75105					14	10	2	0	0	0	0.05021	1	20217	20217		88.954	14.025	1	5509700			26159	7019	18805	18945	25611	25611					0.09910004885705348
KLQQELEFL	9	Unmodified	_KLQQELEFL_					0	0	0		ENSG00000013275|ENST00000157812|PSMC4;ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;ENST00000601697.5_1_19:40477100-40486546:+|nuORF	ENSG00000013275|ENST00000157812|PSMC4	ENSG00000013275|ENST00000157812|PSMC4	MULTI-SECPEP	A375_MHC_IP_R2	2	574.72119140625	2	574.321514	1146.62847	-0.13175	-7.5665E-05	0.24386	0.00014005	0.11211	6.4387E-05	574.3215636758185	87.559	0.45481	88.291	88.166	88.621	0.7318					13	8	2	0	0	0	0.070665	1	33324	33324		60.074	18.234	1	3773600			26160	1016	18806	18946	25612	25612					0.061025678202895506
KLQQREPREAF	11	Unmodified	_KLQQREPREAF_					0	0	0			REV__VAV2|p.S350F|1|0.48|ENSG00000160293|chr9:133795720-133795720|G/A|missense_variant	REV__VAV2|p.S350F|1|0.48|ENSG00000160293|chr9:133795720-133795720|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	467.9062194824219	3	467.924759	1400.75245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.378	1	19.378	18.878	19.878	0								0	0	0	0.16302	1	4768	4768		1.2148	0.10508	1		+		26161	28978	18807	18947	25613	25613					0.06810038640446692
KLRAQVLRL	9	Unmodified	_KLRAQVLRL_					0	0	0		KLC1|p.R111L|1|0.11|ENSG00000126214|chr14:103657616-103657616|G/T|missense_variant	KLC1|p.R111L|1|0.11|ENSG00000126214|chr14:103657616-103657616|G/T|missense_variant	KLC1|p.R111L|1|0.11|ENSG00000126214|chr14:103657616-103657616|G/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	366.6487731933594	3	366.248625	1095.72405	-0.16298	-5.9692E-05	0.65341	0.00023931	0.49042	0.00017962	366.2488757027224	38.276	0.35603	38.276	38.067	38.423	0					10	6	2	0	0	0	0.22013	1	12987	12987		36.506	11.515	1	6750800			26162	14222	18808	18948	25614	25614					0.18001385521824886
KLREDLERL	9	Unmodified	_KLREDLERL_					0	0	0		ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18	ENST00000496813.5_1_6:33239896-33244045:+|nuORF	ENST00000496813.5_1_6:33239896-33244045:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	391.63153076171875	3	391.2313	1170.67207	0.23026	9.0084E-05	0.13213	5.1692E-05	0.36238	0.00014178	391.2312873236363	35.063	0.86636	35.063	34.81	35.676	0					35	16	3	0	0	0	0.12339	1	11601	11601		46.475	0.45292	1	11362000			26163	9723	18809	18949	25615	25615					0.09356177317408765
KLREDLERL	9	Unmodified	_KLREDLERL_					0	0	0		ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18	ENST00000496813.5_1_6:33239896-33244045:+|nuORF	ENST00000496813.5_1_6:33239896-33244045:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	391.6313171386719	3	391.2313	1170.67207	-0.59495	-0.00023276	0.33322	0.00013036	-0.26173	-0.0001024	391.23143642096665	34.025	0.45713	34.778	34.6	35.057	0.75225					23	8	4	0	0	0	0.058715	3	12238	12226;12238;12317		60.899	8.0152	1	24892000			26164	9723	18809	18949	25616;25617;25618	25617					0.09356177317408765
KLREENKF	8	Unmodified	_KLREENKF_					0	0	0		ENSG00000171448|ENST00000373656|ZBTB26	ENSG00000171448|ENST00000373656|ZBTB26	ENSG00000171448|ENST00000373656|ZBTB26	MULTI-SECPEP	A375_MHC_IP_R2	2	355.6009216308594	3	355.201341	1062.58219	-1.0714	-0.00038058	-0.089762	-3.1884E-05	-1.1612	-0.00041246	355.2012965383004	29.207	0.5558	29.905	29.73	30.286	0.69872					14	10	2	0	0	0	0.972	1	10220	10220		3.2813	0	1	3090500			26165	7600	18810	18950	25619	25619					0.053405477088290354
KLRFQVLFI	9	Unmodified	_KLRFQVLFI_					0	0	0			REV__ENST00000261574.9_1_13:98674841-98674961:+|nuORF	REV__ENST00000261574.9_1_13:98674841-98674961:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	388.9818115234375	3	388.581493	1162.72265	0.43546	0.00016921	0.0017822	6.9254E-07	0.43724	0.00016991	388.58149592250294	42.866	0.40568	42.866	42.689	43.095	0					13	7	2	0	0	0	0.69317	1	14911	14911		7.609	0	1	2063100	+		26166	23191	18811	18951	25620	25620					0.14779751433070487
KLRFQVLFI	9	Unmodified	_KLRFQVLFI_					0	0	0			REV__ENST00000261574.9_1_13:98674841-98674961:+|nuORF	REV__ENST00000261574.9_1_13:98674841-98674961:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	388.581493	1162.72265	-0.16449	-6.3916E-05	0.097038	3.7707E-05	-0.067448	-2.6209E-05	388.5814898227794	41.815	0.40893	42.589	42.35	42.759	0.77451	-0.13853	5.8523E-05	NaN	7.609	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1844100	+		26167	23191	18811	18951							0.14779751433070487
KLRHLGTF	8	Unmodified	_KLRHLGTF_					0	0	0		TAS1R2|p.E315K|2|0.29|ENSG00000179002|chr1:18854527-18854527|C/T|missense_variant	TAS1R2|p.E315K|2|0.29|ENSG00000179002|chr1:18854527-18854527|C/T|missense_variant	TAS1R2|p.E315K|2|0.29|ENSG00000179002|chr1:18854527-18854527|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	486.327880859375	2	486.292894	970.571235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.419	1	42.419	41.919	42.919	0								0	0	0	0.16876	1	14701	14701		13.508	1.8676	1				26168	29295	18812	18952	25621	25621					0.08477190125233847
KLRHWQERRFR	11	Unmodified	_KLRHWQERRFR_					0	0	0		ENST00000482462.1_1_7:540505-540673:-|nuORF	ENST00000482462.1_1_7:540505-540673:-|nuORF	ENST00000482462.1_1_7:540505-540673:-|nuORF	MSMS	A375_MHC_IP_R2	2	537.98193359375	3	537.974558	1610.90185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.85	1	82.593	82.093	83.093	0.74293								0	0	0	0.16353	1	31092	31092		0.32927	0.23443	1				26169	12524	18813	18953	25622	25622					0.12083028773690785
KLRKPLILKRK	11	Unmodified	_KLRKPLILKRK_					0	0	0			REV__ENST00000472669.5_1_6:108365991-108372269:-|nuORF	REV__ENST00000472669.5_1_6:108365991-108372269:-|nuORF	MSMS	A375_MHC_IP_R2	2	697.4672241210938	2	696.998106	1391.98166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.029	1	58.777	58.277	59.277	0.74894								0	0	0	0.1636	1	21949	21949		0	0	1		+		26170	16767	18814	18954	25623	25623					0.30134702394980195
KLRKSTEAD	9	Unmodified	_KLRKSTEAD_					0	0	0			REV__ENSG00000198920|ENST00000361413|KIAA0753	REV__ENSG00000198920|ENST00000361413|KIAA0753	MULTI-MSMS	A375_MHC_IP_R1	1	524.6871948242188	2	524.293288	1046.57202	-0.81263	-0.00042606	1.1224	0.00058846	0.30975	0.0001624	524.293835354176	26.385	0.35373	26.385	26.221	26.575	0					11	6	2	0	0	0	0.51106	1	7810	7810		19.257	0	1	2875700	+		26171	22448	18815	18955	25624	25624					0.050599399836073644
KLRKSTEAD	9	Unmodified	_KLRKSTEAD_					0	0	0			REV__ENSG00000198920|ENST00000361413|KIAA0753	REV__ENSG00000198920|ENST00000361413|KIAA0753	MULTI-MATCH	A375_MHC_IP_R2	2		2	524.293288	1046.57202	-0.9732	-0.00051024	0.94705	0.00049653	-0.026155	-1.3713E-05	524.293782461687	25.784	0.5094	26.444	26.194	26.703	0.65992	0.029504	-6.6696E-05	NaN	19.257	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1934400	+		26172	22448	18815	18955							0.050599399836073644
KLRKVKKSIKK	11	Unmodified	_KLRKVKKSIKK_					0	0	0		DDX60|p.E1181K|1|0.19|ENSG00000137628|chr4:168255727-168255727|C/T|missense_variant	DDX60|p.E1181K|1|0.19|ENSG00000137628|chr4:168255727-168255727|C/T|missense_variant	DDX60|p.E1181K|1|0.19|ENSG00000137628|chr4:168255727-168255727|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	678.3453369140625	2	678.482289	1354.95002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.458	1	99.458	98.958	99.958	0								0	0	0	0.1636	1	36536	36536		0	0	1				26173	730	18816	18956	25625	25625					0.286747096410636
KLRKWELLREY	11	Unmodified	_KLRKWELLREY_					0	0	0			REV__tr|U7SYC0|U7SYC0_FUSNUIsochorismatase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00962PE=4SV=1	REV__tr|U7SYC0|U7SYC0_FUSNUIsochorismatase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00962PE=4SV=1	MSMS	A375_MHC_IP_R2	2	767.4481201171875	2	767.448643	1532.88273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.603	1	97.359	96.859	97.859	0.75586								0	0	0	0.16353	1	36675	36675		0.35063	0	1		+		26174	28627	18817	18957	25626	25626					0.13760634639447744
KLRLRLTKRK	10	Unmodified	_KLRLRLTKRK_					0	0	0		ENSG00000125386|ENST00000637812|FAM193A;nc|ENSG00000125386|P78312-4|FAM193A;nc|ENSG00000125386|P78312-2|FAM193A;nc|ENSG00000125386|P78312-5|FAM193A;nc|ENSG00000125386|P78312|FAM193A;nc|ENSG00000125386|P78312-6|FAM193A;ENST00000513898.5_1_4:2696860-2717089:+|nuORF	ENSG00000125386|ENST00000637812|FAM193A	ENSG00000125386|ENST00000637812|FAM193A	MSMS	A375_MHC_IP_R1	1	656.1420288085938	2	656.456605	1310.89866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.394	1	90.394	89.894	90.894	0								0	0	0	0.15629	1	33219	33219		0.40072	0	1				26175	3957	18818	18958	25627	25627					0.2556438566698489
KLRNLFTKF	9	Unmodified	_KLRNLFTKF_					0	0	0		ENSG00000052749|ENST00000370992|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;nc|ENSG00000052749|Q5JTH9-2|RRP12;ENST00000491313.5_1_10:99116853-99127090:-|nuORF;RRP12|p.R1013C|1|0.24|ENSG00000052749|chr10:97367051-97367051|G/A|missense_variant;RRP12|p.R1001C|1|0.19|ENSG00000052749|chr10:97367087-97367087|G/A|missense_variant;ENST00000479481.5_1_10:99116853-99131081:-|nuORF	ENSG00000052749|ENST00000370992|RRP12;ENST00000479481.5_1_10:99116853-99131081:-|nuORF	ENSG00000052749|ENST00000370992|RRP12	MULTI-SECPEP	A375_MHC_IP_R1	1	390.3076477050781	3	389.572998	1165.69716	-0.011862	-4.6211E-06	0.2905	0.00011317	0.27864	0.00010855	389.5730181656781	52.965	0.55625	52.965	52.694	53.25	0					23	10	3	0	0	0	0.31976	1	18853	18853		51.488	12.873	1	4524600			26176	1240;12475	18819	18959	25628	25628					0.1209427691064775
KLRNLFTKF	9	Unmodified	_KLRNLFTKF_					0	0	0		ENSG00000052749|ENST00000370992|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;nc|ENSG00000052749|Q5JTH9-2|RRP12;ENST00000491313.5_1_10:99116853-99127090:-|nuORF;RRP12|p.R1013C|1|0.24|ENSG00000052749|chr10:97367051-97367051|G/A|missense_variant;RRP12|p.R1001C|1|0.19|ENSG00000052749|chr10:97367087-97367087|G/A|missense_variant;ENST00000479481.5_1_10:99116853-99131081:-|nuORF	ENSG00000052749|ENST00000370992|RRP12;ENST00000479481.5_1_10:99116853-99131081:-|nuORF	ENSG00000052749|ENST00000370992|RRP12	MULTI-SECPEP	A375_MHC_IP_R2	2	389.9726257324219	3	389.572998	1165.69716	-0.42824	-0.00016683	0.10235	3.9873E-05	-0.32589	-0.00012696	389.57298959052895	51.74	0.5094	52.493	52.219	52.729	0.75225					20	9	3	0	0	0	0.29257	1	19475	19475		53.317	14.702	1	4734700			26177	1240;12475	18819	18959	25629	25629					0.1209427691064775
KLRPRIAKW	9	Unmodified	_KLRPRIAKW_					0	0	0		ENST00000531836.5_1_19:10490323-10491094:-|nuORF	ENST00000531836.5_1_19:10490323-10491094:-|nuORF	ENST00000531836.5_1_19:10490323-10491094:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	389.9560241699219	3	389.92062	1166.74003	-0.59824	-0.00023327	0.26037	0.00010153	-0.33787	-0.00013174	389.92070728574083	25.967	0.45839	26.627	26.449	26.907	0.65992					15	8	2	0	0	0	0.46038	1	8750	8750		15.248	7.093	1	4371800			26178	13179	18820	18960	25630	25630					0.1633309175872455
KLRQQFRK	8	Unmodified	_KLRQQFRK_					0	0	0		ENSG00000173093|ENST00000308208|CCDC63	ENSG00000173093|ENST00000308208|CCDC63	ENSG00000173093|ENST00000308208|CCDC63	MSMS	A375_MHC_IP_R2	2	368.6051940917969	3	368.564725	1102.67235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.795	1	30.493	29.993	30.993	0.69872								0	0	0	0.16876	1	10432	10432		5.2969	0.58097	1				26179	7768	18821	18961	25631	25631					0.12511641827927633
KLRQRHHWPQR	11	Unmodified	_KLRQRHHWPQR_					0	0	0		chr8:12799382-12811380|365|17.14|0.07|8.03|-|0|TE_info:MER52D,MER52D_dup309,ERV1,LTR,acceptor,-,12798890,12799382|None,LINC03019|2	chr8:12799382-12811380|365|17.14|0.07|8.03|-|0|TE_info:MER52D,MER52D_dup309,ERV1,LTR,acceptor,-,12798890,12799382|None,LINC03019|2	chr8:12799382-12811380|365|17.14|0.07|8.03|-|0|TE_info:MER52D,MER52D_dup309,ERV1,LTR,acceptor,-,12798890,12799382|None,LINC03019|2	MSMS	A375_MHC_IP_R1	1	771.8359985351562	2	771.437267	1540.85998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.08	1	144.08	143.58	144.58	0								0	0	0	0.16354	1	55262	55262		0.30703	0	1				26180	505	18822	18962	25632	25632					0.11118473085184633
KLRQRHHWPQR	11	Unmodified	_KLRQRHHWPQR_					0	0	0		chr8:12799382-12811380|365|17.14|0.07|8.03|-|0|TE_info:MER52D,MER52D_dup309,ERV1,LTR,acceptor,-,12798890,12799382|None,LINC03019|2	chr8:12799382-12811380|365|17.14|0.07|8.03|-|0|TE_info:MER52D,MER52D_dup309,ERV1,LTR,acceptor,-,12798890,12799382|None,LINC03019|2	chr8:12799382-12811380|365|17.14|0.07|8.03|-|0|TE_info:MER52D,MER52D_dup309,ERV1,LTR,acceptor,-,12798890,12799382|None,LINC03019|2	MSMS	A375_MHC_IP_R2	2	771.8367919921875	2	771.437267	1540.85998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.06	1	144.08	143.58	144.58	0.024414								0	0	0	0.16354	1	56281	56281		0.30703	0	1				26181	505	18822	18962	25633	25633					0.11118473085184633
KLRTYLPD	8	Unmodified	_KLRTYLPD_					0	0	0		ENSG00000104522|ENST00000425753|GFUS;ENST00000531473.5_1_8:144695082-144696778:-|nuORF;ENST00000528920.5_1_8:144695082-144695843:-|nuORF	ENSG00000104522|ENST00000425753|GFUS	ENSG00000104522|ENST00000425753|GFUS	MULTI-SECPEP	A375_MHC_IP_R1	1	503.990966796875	2	503.290017	1004.56548	-0.69684	-0.00035071	1.1618	0.00058473	0.46498	0.00023402	503.2905931436506	26.414	0.65642	26.414	26.271	26.928	0					16	12	2	0	0	0	0.95423	1	7997	7997		7.9102	0.62092	1	2784200			26182	2518	18823	18963	25634	25634					0.06338046822872911
KLSDLLFQNT	10	Unmodified	_KLSDLLFQNT_					0	0	0			REV__ENST00000465695.1_1_10:75532330-75533574:+|nuORF	REV__ENST00000465695.1_1_10:75532330-75533574:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	393.9518127441406	3	393.552039	1177.63429	0.035565	1.3997E-05	0.0027422	1.0792E-06	0.038307	1.5076E-05	393.55178405472384	60.694	0.61001	60.694	60.363	60.973	0					24	11	3	0	0	0	0.32528	1	21865	21865		28.181	6.3818	1	4573300	+		26183	22243	18824	18964	25635	25635					0.05257666331931432
KLSDLQTQL	9	Unmodified	_KLSDLQTQL_					0	0	0		ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	MULTI-MSMS	A375_MHC_IP_R1	1	523.7233276367188	2	523.298039	1044.58152	-0.44752	-0.00023419	-0.19828	-0.00010376	-0.6458	-0.00033795	523.2978293565011	55.661	0.56023	55.661	55.381	55.941	0					31	10	4	0	0	0	0.0096822	2	19916	19877;19916		110.55	34.792	1	17377000			26184	2407	18825	18965	25636;25637	25637					0.061017082691250835
KLSDLQTQL	9	Unmodified	_KLSDLQTQL_					0	0	0		ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	MULTI-SECPEP	A375_MHC_IP_R2	2	523.6793823242188	2	523.298039	1044.58152	-0.71696	-0.00037518	0.0086476	4.5253E-06	-0.70831	-0.00037066	523.2979244032575	54.834	0.50986	55.585	55.32	55.83	0.75075					26	9	4	0	0	0	0.038931	1	20706	20706		90.135	22.054	1	18820000			26185	2407	18825	18965	25638	25638					0.061017082691250835
KLSDSRIAL	9	Unmodified	_KLSDSRIAL_					0	0	0		ENST00000514482.1_1_4:190862182-190882061:+|nuORF;ENSG00000109536|ENST00000226798|FRG1;FRG1|p.S111F|1|0.62|ENSG00000109536|chr4:189955051-189955051|C/T|missense_variant;ENST00000278882.8_1_20:29623179-29633907:+|nuORF	ENST00000514482.1_1_4:190862182-190882061:+|nuORF	ENST00000514482.1_1_4:190862182-190882061:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.2006530761719	2	501.800749	1001.58694	-0.05298	-2.6585E-05	-0.14565	-7.3088E-05	-0.19863	-9.9674E-05	501.8006311472254	38.806	0.55863	38.806	38.526	39.085	0					23	10	3	0	0	0	0.11849	1	13181	13181		70.332	30.382	1	22816000			26186	2875	18826	18966	25639	25639					0.08621431851599937
KLSDSRIAL	9	Unmodified	_KLSDSRIAL_					0	0	0		ENST00000514482.1_1_4:190862182-190882061:+|nuORF;ENSG00000109536|ENST00000226798|FRG1;FRG1|p.S111F|1|0.62|ENSG00000109536|chr4:189955051-189955051|C/T|missense_variant;ENST00000278882.8_1_20:29623179-29633907:+|nuORF	ENST00000514482.1_1_4:190862182-190882061:+|nuORF	ENST00000514482.1_1_4:190862182-190882061:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	502.2003479003906	2	501.800749	1001.58694	-0.78392	-0.00039337	0.065363	3.2799E-05	-0.71856	-0.00036057	501.80072617940993	37.836	0.51318	38.611	38.382	38.895	0.77451					24	9	4	0	0	0	0.0085482	1	13856	13856		128.57	62.116	1	16455000			26187	2875	18826	18966	25640	25640					0.08621431851599937
KLSDVWKEL	9	Unmodified	_KLSDVWKEL_					0	0	0		nc|ENSG00000168404|Q8NB16-2|MLKL;ENSG00000168404|ENST00000308807|MLKL	nc|ENSG00000168404|Q8NB16-2|MLKL	nc|ENSG00000168404|Q8NB16-2|MLKL	MULTI-SECPEP	A375_MHC_IP_R1	1	559.716796875	2	559.316232	1116.61791	-0.55217	-0.00030884	0.34794	0.00019461	-0.20423	-0.00011423	559.3164288273258	79.99	0.61195	79.99	79.728	80.34	0					26	11	4	0	0	0	0.023846	1	29172	29172		104.48	34.152	1	6100000			26188	7297	18827	18967	25641	25641					0.06426585165854704
KLSDVWKEL	9	Unmodified	_KLSDVWKEL_					0	0	0		nc|ENSG00000168404|Q8NB16-2|MLKL;ENSG00000168404|ENST00000308807|MLKL	nc|ENSG00000168404|Q8NB16-2|MLKL	nc|ENSG00000168404|Q8NB16-2|MLKL	MULTI-SECPEP	A375_MHC_IP_R2	2	559.716552734375	2	559.316232	1116.61791	-0.59492	-0.00033275	-0.35485	-0.00019848	-0.94977	-0.00053122	559.3161497976845	78.992	0.66044	79.736	79.387	80.047	0.74474					29	12	4	0	0	0	0.010851	1	29973	29973		158.08	54.723	1	6413000			26189	7297	18827	18967	25642	25642					0.06426585165854704
KLSEAVTSV	9	Unmodified	_KLSEAVTSV_					0	0	0		nc|ENSG00000144115|Q86YJ6-4|THNSL2;ENSG00000144115|ENST00000674334|THNSL2	nc|ENSG00000144115|Q86YJ6-4|THNSL2	nc|ENSG00000144115|Q86YJ6-4|THNSL2	MULTI-SECPEP	A375_MHC_IP_R2	2	467.6658020019531	2	467.266207	932.517862	-0.84352	-0.00039415	0.47445	0.0002217	-0.36906	-0.00017245	467.26631938655834	34.889	0.45385	35.652	35.475	35.929	0.76338					12	8	2	0	0	0	0.4465	1	12629	12629		24.991	2.2547	1	2997100			26190	5463	18828	18968	25643	25643					0.048903478320426075
KLSEIPLTL	9	Unmodified	_KLSEIPLTL_					0	0	0		nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	MULTI-MSMS	A375_MHC_IP_R1	1	507.7152404785156	2	507.3157	1012.61685	-0.20084	-0.00010189	1.0348	0.00052495	0.83393	0.00042307	507.315400297102	93.029	1.3761	93.029	92.413	93.789	0					72	26	4	0	0	0	0.02114	1	34164	34164		82.529	6.7685	1	14127000			26191	971	18829	18969	25644	25644					0.11104370796954299
KLSEIPLTL	9	Unmodified	_KLSEIPLTL_					0	0	0		nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	MULTI-SECPEP	A375_MHC_IP_R2	2	507.7153625488281	2	507.3157	1012.61685	-0.65585	-0.00033272	1.4159	0.00071831	0.76005	0.00038558	507.31563757477863	92.083	1.1649	92.822	92.227	93.392	0.73902					63	22	4	0	0	0	0.087712	1	35005	35005		66.457	7.7779	1	8539200			26192	971	18829	18969	25645	25645					0.11104370796954299
KLSEIVREF	9	Unmodified	_KLSEIVREF_					0	0	0		nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1	MULTI-MSMS	A375_MHC_IP_R1	1	561.2217407226562	2	560.821681	1119.62881	-0.54741	-0.000307	0.30283	0.00016984	-0.24457	-0.00013716	560.8217312457347	58.738	1.7799	58.738	58.43	60.21	0					78	34	5	0	0	0	0.0077875	1	21058	21058		195.04	84.364	1	92547000			26193	2352;6011	18830	18970	25646	25646					0.07377987540144204
KLSEIVREF	9	Unmodified	_KLSEIVREF_					0	0	0		nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1	MULTI-MSMS	A375_MHC_IP_R1	1	374.61712646484375	3	374.21688	1119.62881	0.25959	9.7143E-05	0.15937	5.9638E-05	0.41896	0.00015678	374.2168989730795	58.767	1.1702	58.767	58.328	59.498	0					65	22	5	0	0	0	0.14659	1	21059	21059		42.312	24.87	1	39859000			26194	2352;6011	18830	18970	25647	25647					0.07377987540144204
KLSEIVREF	9	Unmodified	_KLSEIVREF_					0	0	0		nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1	MULTI-MSMS	A375_MHC_IP_R2	2	561.2213745117188	2	560.821681	1119.62881	-0.9161	-0.00051377	0.31152	0.0001747	-0.60459	-0.00033906	560.8217251068609	57.702	1.4215	58.451	58.069	59.491	0.74895					74	27	5	0	0	0	0.0043619	1	21779	21779		158.08	65.423	1	111560000			26195	2352;6011	18830	18970	25648	25648					0.07377987540144204
KLSEIVREF	9	Unmodified	_KLSEIVREF_					0	0	0		nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1	MULTI-MSMS	A375_MHC_IP_R2	2	374.6168212890625	3	374.21688	1119.62881	0.055951	2.0938E-05	-0.14388	-5.3844E-05	-0.087933	-3.2906E-05	374.21679597968375	57.653	1.2177	58.402	58.019	59.237	0.74894					62	23	5	0	0	0	0.058715	2	21786	21786;22074		60.899	24.504	1	60583000			26196	2352;6011	18830	18970	25649;25650	25649					0.07377987540144204
KLSELKETV	9	Unmodified	_KLSELKETV_					0	0	0		nc|ENSG00000167110|Q08379|GOLGA2;ENSG00000167110|ENST00000611957|GOLGA2;nc|ENSG00000167110|Q08379-2|GOLGA2	nc|ENSG00000167110|Q08379|GOLGA2	nc|ENSG00000167110|Q08379|GOLGA2	MULTI-SECPEP	A375_MHC_IP_R2	2	524.2078247070312	2	523.808239	1045.60193	-0.89855	-0.00047067	-0.076522	-4.0083E-05	-0.97507	-0.00051075	523.8081657412291	28.356	0.30387	29.035	28.808	29.112	0.67857					8	5	2	0	0	0	0.20059	1	9794	9794		51.415	3.8208	1	3720000			26197	7156	18831	18971	25651	25651					0.08094878928932303
KLSELQLRV	9	Unmodified	_KLSELQLRV_					0	0	0		ENSG00000184840|ENST00000332598|TMED9;ENST00000513799.5_1_5:177019550-177022414:+|nuORF;ENST00000507723.1_1_5:177021070-177022414:+|nuORF	ENSG00000184840|ENST00000332598|TMED9	ENSG00000184840|ENST00000332598|TMED9	MULTI-SECPEP	A375_MHC_IP_R1	1	543.73681640625	2	543.337498	1084.66044	-0.44841	-0.00024364	0.15269	8.296E-05	-0.29573	-0.00016068	543.3374346597736	54.384	0.50576	54.384	54.113	54.619	0					26	9	3	0	0	0	0.11849	1	19398	19398		64.927	28.421	1	12864000			26198	8612	18832	18972	25652	25652					0.12149980294088891
KLSELQLRV	9	Unmodified	_KLSELQLRV_					0	0	0		ENSG00000184840|ENST00000332598|TMED9;ENST00000513799.5_1_5:177019550-177022414:+|nuORF;ENST00000507723.1_1_5:177021070-177022414:+|nuORF	ENSG00000184840|ENST00000332598|TMED9	ENSG00000184840|ENST00000332598|TMED9	MULTI-MSMS	A375_MHC_IP_R2	2	362.960693359375	3	362.560758	1084.66044	-0.70179	-0.00025444	0.19449	7.0513E-05	-0.50731	-0.00018393	362.56076270768756	53.418	0.46019	54.169	53.893	54.353	0.75105					20	8	3	0	0	0	0.14659	1	20155	20155		42.312	8.8676	1	3604400			26199	8612	18832	18972	25653	25653					0.12149980294088891
KLSELQLRV	9	Unmodified	_KLSELQLRV_					0	0	0		ENSG00000184840|ENST00000332598|TMED9;ENST00000513799.5_1_5:177019550-177022414:+|nuORF;ENST00000507723.1_1_5:177021070-177022414:+|nuORF	ENSG00000184840|ENST00000332598|TMED9	ENSG00000184840|ENST00000332598|TMED9	MULTI-SECPEP	A375_MHC_IP_R2	2	543.7364501953125	2	543.337498	1084.66044	-1.3949	-0.0007579	0.79315	0.00043095	-0.60175	-0.00032695	543.3377796785984	53.403	0.56227	54.154	53.842	54.404	0.75105					27	10	3	0	0	0	0.32966	1	20124	20124		42.312	17.322	1	10364000			26200	8612	18832	18972	25654	25654					0.12149980294088891
KLSELQLRV	9	Unmodified	_KLSELQLRV_					0	0	0		ENSG00000184840|ENST00000332598|TMED9;ENST00000513799.5_1_5:177019550-177022414:+|nuORF;ENST00000507723.1_1_5:177021070-177022414:+|nuORF	ENSG00000184840|ENST00000332598|TMED9	ENSG00000184840|ENST00000332598|TMED9	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	362.560758	1084.66044	0.30753	0.0001115	-0.51112	-0.00018531	-0.20359	-7.3814E-05	362.56055751369297	54.389	0.45387	54.389	54.113	54.567	0	0.11035	-0.0002702	NaN	42.312	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2385800			26201	8612	18832	18972							0.12149980294088891
KLSELSENMA	10	Unmodified	_KLSELSENMA_					0	0	0		ALDH3A1|p.P139L|2|0.36|ENSG00000108602|chr17:19742609-19742609|G/A|missense_variant	ALDH3A1|p.P139L|2|0.36|ENSG00000108602|chr17:19742609-19742609|G/A|missense_variant	ALDH3A1|p.P139L|2|0.36|ENSG00000108602|chr17:19742609-19742609|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	561.1939086914062	2	561.278989	1120.54342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.842	1	58.842	58.342	59.342	0								0	0	0	0.13064	1	21145	21145		34.402	0.29928	1				26202	103	18833	18973	25655	25655					-0.012025457078379986
KLSEVLQAV	9	Unmodified	_KLSEVLQAV_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	494.1974792480469	2	493.797675	985.580796	-0.57141	-0.00028216	0.39532	0.00019521	-0.17609	-8.6955E-05	493.7980665892561	66.639	0.56091	66.639	66.377	66.938	0					18	10	3	0	0	0	0.13208	1	24106	24106		57.722	1.5449	1	4462700			26203	8836	18834	18974	25656	25656					0.08742913620085346
KLSEYEMSI	9	Unmodified	_KLSEYEMSI_					0	0	0		nc|ENSG00000138138|Q8NBU5-2|ATAD1;ENSG00000138138|ENST00000680024|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	MULTI-MSMS	A375_MHC_IP_R2	2	550.7449951171875	2	550.270632	1098.52671	-0.92732	-0.00051028	0.10179	5.6013E-05	-0.82553	-0.00045427	550.2707801534642	62.293	0.60929	63.036	62.673	63.282	0.74263					21	11	3	0	0	0	0.10622	1	23589	23589		49.554	3.5333	1	3833000			26204	4964	18835	18975	25657	25657					-0.018610465937854315
KLSFIIRTV	9	Unmodified	_KLSFIIRTV_					0	0	0		nc|ENSG00000113441|Q9UIQ6-3|LNPEP;nc|ENSG00000113441|Q9UIQ6-2|LNPEP;ENSG00000113441|ENST00000231368|LNPEP	nc|ENSG00000113441|Q9UIQ6-3|LNPEP	nc|ENSG00000113441|Q9UIQ6-3|LNPEP	MULTI-SECPEP	A375_MHC_IP_R1	1	539.2445678710938	2	538.844959	1075.67537	-0.14784	-7.9663E-05	-0.299	-0.00016112	-0.44684	-0.00024078	538.8447301417456	69.554	0.65733	69.554	69.275	69.933	0					28	12	3	0	0	0	0.24655	1	25212	25212		51.765	21.924	1	14704000			26205	3151	18836	18976	25658	25658					0.14055472162090155
KLSFIIRTV	9	Unmodified	_KLSFIIRTV_					0	0	0		nc|ENSG00000113441|Q9UIQ6-3|LNPEP;nc|ENSG00000113441|Q9UIQ6-2|LNPEP;ENSG00000113441|ENST00000231368|LNPEP	nc|ENSG00000113441|Q9UIQ6-3|LNPEP	nc|ENSG00000113441|Q9UIQ6-3|LNPEP	MULTI-MSMS	A375_MHC_IP_R2	2	359.96160888671875	3	359.565732	1075.67537	-0.092126	-3.3125E-05	-0.054425	-1.9569E-05	-0.14655	-5.2695E-05	359.5656873751156	68.577	0.55569	69.313	69.07	69.626	0.73511					24	10	3	0	0	0	0.050868	1	25958	25958		51.488	15.876	1	3709700			26206	3151	18836	18976	25659	25659					0.14055472162090155
KLSFIIRTV	9	Unmodified	_KLSFIIRTV_					0	0	0		nc|ENSG00000113441|Q9UIQ6-3|LNPEP;nc|ENSG00000113441|Q9UIQ6-2|LNPEP;ENSG00000113441|ENST00000231368|LNPEP	nc|ENSG00000113441|Q9UIQ6-3|LNPEP	nc|ENSG00000113441|Q9UIQ6-3|LNPEP	MULTI-SECPEP	A375_MHC_IP_R2	2	539.2437744140625	2	538.844959	1075.67537	-0.74881	-0.00040349	0.040888	2.2033E-05	-0.70792	-0.00038146	538.844922230292	68.511	0.6071	69.247	69.018	69.626	0.73511					32	11	3	0	0	0	0.15393	1	25948	25948		44.945	17.316	1	11416000			26207	3151	18836	18976	25660	25660					0.14055472162090155
KLSFIIRTV	9	Unmodified	_KLSFIIRTV_					0	0	0		nc|ENSG00000113441|Q9UIQ6-3|LNPEP;nc|ENSG00000113441|Q9UIQ6-2|LNPEP;ENSG00000113441|ENST00000231368|LNPEP	nc|ENSG00000113441|Q9UIQ6-3|LNPEP	nc|ENSG00000113441|Q9UIQ6-3|LNPEP	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	359.565732	1075.67537	0.6305	0.00022671	-0.48234	-0.00017343	0.14816	5.3274E-05	359.56544678141705	69.554	0.50563	69.554	69.377	69.882	0	0.12048	-0.00025638	NaN	51.488	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4715900			26208	3151	18836	18976							0.14055472162090155
KLSGKLYLV	9	Unmodified	_KLSGKLYLV_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B;ENSG00000168280|ENST00000435030|KIF5C;ENSG00000155980|ENST00000455537|KIF5A	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-SECPEP	A375_MHC_IP_R1	1	511.2258605957031	2	510.826235	1019.63792	-0.63548	-0.00032462	0.12963	6.6218E-05	-0.50585	-0.0002584	510.826285120559	53.022	0.50565	53.022	52.744	53.25	0					22	9	3	0	0	0	0.076731	1	18871	18871		80.676	26.843	1	8454700			26209	7534	18837	18977	25661	25661					0.12888380896458784
KLSGKLYLV	9	Unmodified	_KLSGKLYLV_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B;ENSG00000168280|ENST00000435030|KIF5C;ENSG00000155980|ENST00000455537|KIF5A	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	A375_MHC_IP_R2	2	511.2254943847656	2	510.826235	1019.63792	-1.0837	-0.00055356	-0.026916	-1.3749E-05	-1.1106	-0.00056731	510.82619604970563	51.998	0.50865	52.75	52.524	53.032	0.75225					23	9	3	0	0	0	0.02331	1	19569	19569		80.676	26.843	1	8036100			26210	7534	18837	18977	25662	25662					0.12888380896458784
KLSGLTTNV	9	Unmodified	_KLSGLTTNV_					0	0	0		nc|ENSG00000101079|Q9UGV2-3|NDRG3;nc|ENSG00000101079|Q9UGV2-2|NDRG3;ENSG00000101079|ENST00000349004|NDRG3;NDRG3|p.D187H|1|0.23|ENSG00000101079|chr20:36671370-36671370|C/G|missense_variant	nc|ENSG00000101079|Q9UGV2-3|NDRG3	nc|ENSG00000101079|Q9UGV2-3|NDRG3	MULTI-MSMS	A375_MHC_IP_R1	1	467.1738586425781	2	466.7742	931.533846	-0.41116	-0.00019192	-0.087076	-4.0645E-05	-0.49824	-0.00023256	466.7740823300126	41.024	0.55516	41.024	40.813	41.368	0					26	10	4	0	0	0	0.052747	2	14166	14160;14166		63.227	7.7248	1	7328500			26211	2249	18838	18978	25663;25664	25664					0.06534054068947626
KLSGLTTNV	9	Unmodified	_KLSGLTTNV_					0	0	0		nc|ENSG00000101079|Q9UGV2-3|NDRG3;nc|ENSG00000101079|Q9UGV2-2|NDRG3;ENSG00000101079|ENST00000349004|NDRG3;NDRG3|p.D187H|1|0.23|ENSG00000101079|chr20:36671370-36671370|C/G|missense_variant	nc|ENSG00000101079|Q9UGV2-3|NDRG3	nc|ENSG00000101079|Q9UGV2-3|NDRG3	MULTI-SECPEP	A375_MHC_IP_R2	2	467.173828125	2	466.7742	931.533846	-0.69461	-0.00032423	0.18739	8.7468E-05	-0.50722	-0.00023676	466.77419448604996	40.13	0.40612	40.905	40.727	41.133	0.77451					12	7	2	0	0	0	0.11887	1	14852	14852		63.227	11.598	1	6365300			26212	2249	18838	18978	25665	25665					0.06534054068947626
KLSKKKARRRH	11	Unmodified	_KLSKKKARRRH_					0	0	0		nc|ENSG00000171680|O94827-4|PLEKHG5;ENSG00000171680|ENST00000377728|PLEKHG5;nc|ENSG00000171680|O94827-3|PLEKHG5;nc|ENSG00000171680|O94827-7|PLEKHG5;ENST00000489097.5_1_1:6535105-6537631:-|nuORF	nc|ENSG00000171680|O94827-4|PLEKHG5	nc|ENSG00000171680|O94827-4|PLEKHG5	MULTI-SECPEP	A375_MHC_IP_R1	1	704.0123901367188	2	704.46021	1406.90587	-0.60145	-0.0004237	-0.6629	-0.00046698	-1.2643	-0.00089068	704.9624551478963	99.109	0.20213	99.109	99.015	99.218	0					5	3	2	0	0	0	1.0014	1	36430	36430		0	0	1	1135600			26213	7627	18839	18979	25666	25666					0.21869118267431986
KLSKYLQGV	9	Unmodified	_KLSKYLQGV_					0	0	0		ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;nc|ENSG00000148143|Q96JM2-2|ZNF462;ENST00000482115.1_1_9:109734425-109757827:+|nuORF	ENSG00000148143|ENST00000277225|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	MULTI-SECPEP	A375_MHC_IP_R1	1	518.713134765625	2	518.313492	1034.61243	-0.73875	-0.0003829	0.028047	1.4537E-05	-0.7107	-0.00036837	518.3134192226097	41.139	0.40393	41.139	40.913	41.317	0					12	7	2	0	0	0	0.46045	1	14193	14193		29.082	18.258	1	4556200			26214	5716	18840	18980	25667	25667					0.09650906374031365
KLSKYLQGV	9	Unmodified	_KLSKYLQGV_					0	0	0		ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;nc|ENSG00000148143|Q96JM2-2|ZNF462;ENST00000482115.1_1_9:109734425-109757827:+|nuORF	ENSG00000148143|ENST00000277225|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	MULTI-MSMS	A375_MHC_IP_R2	2	518.7131958007812	2	518.313492	1034.61243	-0.76763	-0.00039787	-0.304	-0.00015757	-1.0716	-0.00055544	518.3131458747578	40.136	0.70958	40.91	40.676	41.386	0.77451					20	13	3	0	0	0	0.31062	1	14881	14881		29.841	8.2504	1	3666300			26215	5716	18840	18980	25668	25668					0.09650906374031365
KLSLENKLL	9	Unmodified	_KLSLENKLL_					0	0	0		CCDC68|p.R208K|3|0.21|ENSG00000166510|chr18:54928860-54928860|C/T|missense_variant;ENSG00000166510|ENST00000591504|CCDC68	CCDC68|p.R208K|3|0.21|ENSG00000166510|chr18:54928860-54928860|C/T|missense_variant	CCDC68|p.R208K|3|0.21|ENSG00000166510|chr18:54928860-54928860|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	529.6691284179688	2	529.334424	1056.6543	-0.43762	-0.00023165	-3.0758	-0.0016281	-3.5135	-0.0018598	529.8331127174024	56.535	0.40582	56.535	56.244	56.65	0					11	7	2	0	0	0	0.40377	1	20218	20218		28.495	0	1	1923100			26216	316	18841	18981	25669	25669					0.12823462062578983
KLSLVAAML	9	Oxidation (M)	_KLSLVAAM(Oxidation (M))L_		KLSLVAAM(1)L		KLSLVAAM(86)L	0	0	1		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MSMS	A375_MHC_IP_R1	1	481.46990966796875	2	481.291171	960.567789	-0.44317	-0.00021329	0.093846	4.5167E-05	-0.34933	-0.00016813	481.2911774842995	76.395	0.96508	76.395	76.067	77.032	0					41	18	3	0	0	0	0.018261	2	27795	27772;27795		85.642	25.568	1	18201000			26217	1188	18842	18982	25670;25671	25671		23			0.08592759236341863
KLSLVAAML	9	Oxidation (M)	_KLSLVAAM(Oxidation (M))L_		KLSLVAAM(1)L		KLSLVAAM(86)L	0	0	1		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MSMS	A375_MHC_IP_R1	1	481.6910095214844	2	481.291171	960.567789	-0.31934	-0.0001537	-0.0044724	-2.1525E-06	-0.32381	-0.00015585	481.2911946489672	101.64	0.60629	101.64	101.34	101.95	0					20	11	2	0	0	0	0.018261	1	37352	37352		85.642	34.786	1	2287700			26218	1188	18842	18982	25672	25672		23			0.08592759236341863
KLSLVAAML	9	Oxidation (M)	_KLSLVAAM(Oxidation (M))L_		KLSLVAAM(1)L		KLSLVAAM(76)L	0	0	1		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MSMS	A375_MHC_IP_R2	2	481.6907958984375	2	481.291171	960.567789	-0.59687	-0.00028727	-0.034426	-1.6569E-05	-0.6313	-0.00030384	481.2911579340306	75.351	0.96666	76.091	75.724	76.691	0.74052					49	18	4	0	0	0	0.029064	1	28549	28549		75.761	15.687	1	22134000			26219	1188	18842	18982	25673	25673		23			0.08592759236341863
KLSLVAAML	9	Oxidation (M)	_KLSLVAAM(Oxidation (M))L_		KLSLVAAM(1)L		KLSLVAAM(50)L	0	0	1		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-SECPEP	A375_MHC_IP_R2	2	481.69073486328125	2	481.291171	960.567789	-0.38763	-0.00018656	0.10968	5.2786E-05	-0.27795	-0.00013378	481.2911726882361	100.53	0.56361	101.29	101.03	101.6	0.76278					22	10	3	0	0	0	0.13208	1	38099	38099		49.554	25.765	1	3928200			26220	1188	18842	18982	25674	25674		23			0.08592759236341863
KLSLVAAML	9	Unmodified	_KLSLVAAML_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-SECPEP	A375_MHC_IP_R1	1	473.6559143066406	2	473.293714	944.572874	-0.3954	-0.00018714	0.24267	0.00011485	-0.15273	-7.2288E-05	473.2937908375819	101.64	1.6189	101.64	101.19	102.81	0					55	31	4	0	0	0	0.28216	1	37390	37390		41.84	7.7372	1	15435000			26221	1188	18842	18983	25675	25675					0.09837063098962062
KLSNTSYQF	9	Unmodified	_KLSNTSYQF_					0	0	0		ITGAL|p.A382Qfs*14|1|0.21|ENSG00000005844|chr16:30489316-30489316|G/-|frameshift_variant;ENSG00000005844|ENST00000356798|ITGAL;nc|ENSG00000005844|P20701-2|ITGAL	ITGAL|p.A382Qfs*14|1|0.21|ENSG00000005844|chr16:30489316-30489316|G/-|frameshift_variant	ITGAL|p.A382Qfs*14|1|0.21|ENSG00000005844|chr16:30489316-30489316|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	363.58526611328125	3	363.185468	1086.53457	-0.48923	-0.00017768	0.023676	8.5987E-06	-0.46555	-0.00016908	363.1854575345382	52.367	0.45345	53.119	52.831	53.285	0.75225					21	8	3	0	0	0	0.72623	1	19719	19719		9.544	1.0997	1	4927800			26222	901	18843	18984	25676	25676					-0.005231512820046191
KLSQLEKDEGM	11	Unmodified	_KLSQLEKDEGM_					0	0	0			REV__ENST00000499568.2_1_11:27698627-27719092:+|nuORF	REV__ENST00000499568.2_1_11:27698627-27719092:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	426.95172119140625	3	426.551711	1276.6333	-0.73632	-0.00031408	0.62528	0.00026672	-0.11104	-4.7364E-05	426.55190271021013	53.468	0.35824	54.219	54.046	54.404	0.75105					12	6	3	0	0	0	0.73078	1	20216	20216		4.1166	0	1	2075200	+		26223	25485	18844	18985	25677	25677					0.006050839007002651
KLSRKGFHE	9	Unmodified	_KLSRKGFHE_					0	0	0			REV__MASTL|p.L438F|1|0.56|ENSG00000120539|chr10:27170271-27170271|C/T|missense_variant	REV__MASTL|p.L438F|1|0.56|ENSG00000120539|chr10:27170271-27170271|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	367.0921325683594	3	367.876969	1100.60908	0.16188	5.9553E-05	-0.11441	-4.2088E-05	0.047476	1.7465E-05	368.2111044585306	32.188	0.15518	32.188	32.075	32.231	0					4	2	2	0	0	0	0.67483	1	10387	10387		10.151	2.5416	1	406120	+		26224	26990	18845	18986	25678	25678					0.06279656320043614
KLSSAHVYL	9	Unmodified	_KLSSAHVYL_					0	0	0		CCDC25|p.D43N|1|0.32|ENSG00000147419|chr8:27756760-27756760|C/T|missense_variant;ENSG00000147419|ENST00000356537|CCDC25	CCDC25|p.D43N|1|0.32|ENSG00000147419|chr8:27756760-27756760|C/T|missense_variant	CCDC25|p.D43N|1|0.32|ENSG00000147419|chr8:27756760-27756760|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	509.6896057128906	2	509.290017	1016.56548	-0.21302	-0.00010849	-0.088238	-4.4939E-05	-0.30126	-0.00015343	509.28966278598364	35.644	0.46088	35.644	35.421	35.881	0					19	8	3	0	0	0	0.018928	1	11863	11863		88.954	35.121	1	9616500			26225	313	18846	18987	25679	25679					0.05786046822890967
KLSSAHVYL	9	Unmodified	_KLSSAHVYL_					0	0	0		CCDC25|p.D43N|1|0.32|ENSG00000147419|chr8:27756760-27756760|C/T|missense_variant;ENSG00000147419|ENST00000356537|CCDC25	CCDC25|p.D43N|1|0.32|ENSG00000147419|chr8:27756760-27756760|C/T|missense_variant	CCDC25|p.D43N|1|0.32|ENSG00000147419|chr8:27756760-27756760|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	509.689453125	2	509.290017	1016.56548	-0.93655	-0.00047698	0.25701	0.00013089	-0.67955	-0.00034609	509.28984583743784	34.653	0.55613	35.416	35.171	35.727	0.76338					20	10	3	0	0	0	0.018928	1	12523	12523		88.954	35.121	1	6327100			26226	313	18846	18987	25680	25680					0.05786046822890967
KLSSKLSAV	9	Unmodified	_KLSSKLSAV_					0	0	0		ENST00000440760.5_1_2:27594325-27599583:+|nuORF;nc|ENSG00000115234|Q15036-2|SNX17;ENSG00000115234|ENST00000233575|SNX17	ENST00000440760.5_1_2:27594325-27599583:+|nuORF	ENST00000440760.5_1_2:27594325-27599583:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	467.15264892578125	2	466.792392	931.570232	-1.0819	-0.00050502	0.46085	0.00021512	-0.62105	-0.0002899	466.79256516116214	25.359	0.20328	26.002	25.924	26.128	0.64368					6	3	2	0	0	0	0.37663	1	8490	8490		18.373	5.3306	1	2396800			26227	3286	18847	18988	25681	25681					0.10170930965671232
KLTAFVNTL	9	Unmodified	_KLTAFVNTL_					0	0	0		ENSG00000159352|ENST00000368884|PSMD4;nc|ENSG00000159352|P55036-2|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF	ENSG00000159352|ENST00000368884|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL	nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-SECPEP	A375_MHC_IP_R1	1	504.19921875	2	503.800217	1005.58588	-0.40345	-0.00020326	-1.7024	-0.00085765	-2.1058	-0.0010609	503.7987533949011	77.413	1.2691	77.413	76.37	77.639	0					37	24	3	0	0	0	0.042716	1	28218	28218		76.825	19.103	1	4031400			26228	12500;6368	18848	18989	25682	25682					0.08331217482702868
KLTAFVNTL	9	Unmodified	_KLTAFVNTL_					0	0	0		ENSG00000159352|ENST00000368884|PSMD4;nc|ENSG00000159352|P55036-2|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF	ENSG00000159352|ENST00000368884|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL	nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1997985839844	2	503.800217	1005.58588	-0.6535	-0.00032924	-0.55905	-0.00028165	-1.2126	-0.00061088	503.79978138253176	76.37	0.86203	77.11	76.691	77.553	0.74052					26	16	2	0	0	0	0.41434	1	28967	28967		39.95	14.55	1	2839000			26229	12500;6368	18848	18989	25683	25683					0.08331217482702868
KLTDIQIEL	9	Unmodified	_KLTDIQIEL_					0	0	0		nc|ENSG00000176049|Q96AA8-2|JAKMIP2;nc|ENSG00000176049|Q96AA8|JAKMIP2;ENSG00000176049|ENST00000616793|JAKMIP2;nc|ENSG00000188385|Q5VZ66|JAKMIP3;ENSG00000188385|ENST00000684848|JAKMIP3	nc|ENSG00000176049|Q96AA8-2|JAKMIP2	nc|ENSG00000176049|Q96AA8-2|JAKMIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	537.2156372070312	2	536.816064	1071.61758	-0.60662	-0.00032564	0.36872	0.00019793	-0.2379	-0.00012771	536.816281647294	93.407	0.61234	93.407	93.176	93.789	0					29	11	3	0	0	0	0.048303	1	34318	34318		83.429	3.8324	1	7220600			26230	7996	18849	18990	25684	25684					0.08463165446005405
KLTDIQIEL	9	Unmodified	_KLTDIQIEL_					0	0	0		nc|ENSG00000176049|Q96AA8-2|JAKMIP2;nc|ENSG00000176049|Q96AA8|JAKMIP2;ENSG00000176049|ENST00000616793|JAKMIP2;nc|ENSG00000188385|Q5VZ66|JAKMIP3;ENSG00000188385|ENST00000684848|JAKMIP3	nc|ENSG00000176049|Q96AA8-2|JAKMIP2	nc|ENSG00000176049|Q96AA8-2|JAKMIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	537.21533203125	2	536.816064	1071.61758	-0.80038	-0.00042966	-0.30404	-0.00016322	-1.1044	-0.00059287	536.8159756682937	92.607	0.60882	93.346	93.038	93.646	0.73902					21	11	2	0	0	0	0.019499	1	35206	35206		103.42	23.823	1	5257000			26231	7996	18849	18990	25685	25685					0.08463165446005405
KLTDYQVTL	9	Unmodified	_KLTDYQVTL_					0	0	0		nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-SECPEP	A375_MHC_IP_R1	1	540.6769409179688	2	540.800414	1079.58628	-0.32389	-0.00017516	-0.069136	-3.7389E-05	-0.39302	-0.00021255	540.8002277488829	70.049	0.55847	70.049	69.782	70.341	0					27	10	3	0	0	0	0.036758	1	25418	25418		99.755	17.865	1	6475900			26232	4866	18850	18991	25686	25686					0.04966592411892634
KLTDYQVTL	9	Unmodified	_KLTDYQVTL_					0	0	0		nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-SECPEP	A375_MHC_IP_R2	2	541.2000122070312	2	540.800414	1079.58628	-0.74325	-0.00040195	-0.21845	-0.00011814	-0.9617	-0.00052009	540.800223459175	69.247	0.81254	69.982	69.676	70.489	0.73466					35	15	4	0	0	0	0.41434	1	26216	26216		39.95	1.7741	1	7596500			26233	4866	18850	18991	25687	25687					0.04966592411892634
KLTEIRHEV	9	Unmodified	_KLTEIRHEV_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2;nc|ENSG00000121741|Q9UBW7-2|ZMYM2;ENST00000382881.7_1_13:20532931-20593821:+|nuORF	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-MSMS	A375_MHC_IP_R1	1	375.9521789550781	3	375.552262	1123.63496	0.66805	0.00025089	-0.47318	-0.0001777	0.19487	7.3186E-05	375.55202915942226	22.082	0.45839	22.082	21.808	22.267	0					18	8	3	0	0	0	0.017727	1	5875	5875		88.364	42.341	1	6298400			26234	3732	18851	18992	25688	25688					0.07808505771640739
KLTEIRHEV	9	Unmodified	_KLTEIRHEV_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2;nc|ENSG00000121741|Q9UBW7-2|ZMYM2;ENST00000382881.7_1_13:20532931-20593821:+|nuORF	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-MSMS	A375_MHC_IP_R1	1	375.9521484375	3	375.552262	1123.63496	0.5056	0.00018988	-0.28112	-0.00010557	0.22449	8.4307E-05	375.5520625929702	22.993	0.50359	22.993	22.723	23.227	0					20	9	3	0	0	0	0.13845	2	6247	6226;6247		47.732	25.671	1	6560000			26235	3732	18851	18992	25689;25690	25690					0.07808505771640739
KLTEIRHEV	9	Unmodified	_KLTEIRHEV_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2;nc|ENSG00000121741|Q9UBW7-2|ZMYM2;ENST00000382881.7_1_13:20532931-20593821:+|nuORF	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-SECPEP	A375_MHC_IP_R2	2	375.95196533203125	3	375.552262	1123.63496	-0.044867	-1.685E-05	-1.0438	-0.000392	-1.0887	-0.00040885	375.55164944202687	20.278	0.86152	20.889	20.349	21.21	0.61029					33	14	3	0	0	0	0.22619	1	6299	6299		59.052	27.015	1	5421700			26236	3732	18851	18992	25691	25691					0.07808505771640739
KLTENIKW	8	Unmodified	_KLTENIKW_					0	0	0			REV__ENSG00000206530|ENST00000393845|CFAP44	REV__ENSG00000206530|ENST00000393845|CFAP44	MULTI-SECPEP	A375_MHC_IP_R2	2	516.6973876953125	2	516.297842	1030.58113	-0.90285	-0.00046614	-0.42313	-0.00021846	-1.326	-0.0006846	516.2976883432456	35.966	0.35836	36.73	36.587	36.946	0.76338					9	6	2	0	0	0	0.96184	1	13110	13110		13.042	5.7532	1	2314000	+		26237	22597	18852	18993	25692	25692					0.06706333339957382
KLTGILQEV	9	Unmodified	_KLTGILQEV_					0	0	0		ENSG00000129250|ENST00000320785|KIF1C	ENSG00000129250|ENST00000320785|KIF1C	ENSG00000129250|ENST00000320785|KIF1C	MULTI-SECPEP	A375_MHC_IP_R2	2	501.2050476074219	2	500.8055	999.596446	-0.60496	-0.00030297	0.14521	7.2722E-05	-0.45975	-0.00023025	500.80544225517673	75.503	0.81571	76.243	75.875	76.691	0.74052					37	15	4	0	0	0	0.20451	1	28620	28620		41.956	24.843	1	11413000			26238	4183	18853	18994	25693	25693					0.09663200137140393
KLTGRERRI	9	Unmodified	_KLTGRERRI_					0	0	0		ENST00000258411.7_1_2:219758254-219758398:+|nuORF	ENST00000258411.7_1_2:219758254-219758398:+|nuORF	ENST00000258411.7_1_2:219758254-219758398:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	377.3011474609375	3	376.903518	1127.68872	0.36749	0.00013851	-2.3213	-0.00087492	-1.9539	-0.00073641	376.9010191195448	47.247	0.45831	48.008	47.817	48.275	0.76128					29	8	5	0	0	0	0.33243	1	17736	17736		28.234	11.668	1	5750600			26239	10255	18854	18995	25694	25694					0.12998722994029777
KLTKKIKKL	9	Unmodified	_KLTKKIKKL_					0	0	0		ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	MSMS	A375_MHC_IP_R1	1	367.255859375	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.658	1	18.658	18.158	19.158	0								0	0	0	0.15486	1	4462	4462		0	0	1				26240	12028	18855	18996	25695	25695					0.23980897501269283
KLTKKIKKL	9	Unmodified	_KLTKKIKKL_					0	0	0		ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	MSMS	A375_MHC_IP_R1	1	367.205322265625	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.872	1	18.872	18.372	19.372	0								0	0	0	0.15486	1	4530	4530		0	0	1				26241	12028	18855	18996	25696	25696					0.23980897501269283
KLTKKIKKL	9	Unmodified	_KLTKKIKKL_					0	0	0		ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	MSMS	A375_MHC_IP_R1	1	367.2555847167969	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.197	1	19.197	18.697	19.697	0								0	0	0	0.15486	1	4626	4626		0	0	1				26242	12028	18855	18996	25697	25697					0.23980897501269283
KLTKKIKKL	9	Unmodified	_KLTKKIKKL_					0	0	0		ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	MSMS	A375_MHC_IP_R2	2	367.2049255371094	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.592	1	18.188	17.688	18.688	0.59616								0	0	0	0.15486	1	5181	5181		0	0	1				26243	12028	18855	18996	25698	25698					0.23980897501269283
KLTKKIKKL	9	Unmodified	_KLTKKIKKL_					0	0	0		ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	MSMS	A375_MHC_IP_R2	2	367.2052001953125	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.117	1	18.72	18.22	19.22	0.60308								0	0	0	0.15486	1	5371	5371		0	0	1				26244	12028	18855	18996	25699	25699					0.23980897501269283
KLTKKIKKL	9	Unmodified	_KLTKKIKKL_					0	0	0		ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	MSMS	A375_MHC_IP_R2	2	367.2053527832031	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.711	1	19.314	18.814	19.814	0.60308								0	0	0	0.15486	1	5579	5579		0	0	1				26245	12028	18855	18996	25700	25700					0.23980897501269283
KLTNPLQDG	9	Unmodified	_KLTNPLQDG_					0	0	0			REV__ENSG00000204351|ENST00000375394|SKIC2	REV__ENSG00000204351|ENST00000375394|SKIC2	MSMS	A375_MHC_IP_R2	2	493.1973876953125	2	493.269281	984.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.232	1	85.968	85.468	86.468	0.73601								0	0	0	0.15273	1	32401	32401		17.113	3.2068	1		+		26246	22508	18856	18997	25701	25701					0.03112866063565889
KLTPATTVFH	10	Unmodified	_KLTPATTVFH_					0	0	0			REV__nc|ENSG00000063015|Q53EL9-4|SEZ6	REV__nc|ENSG00000063015|Q53EL9-4|SEZ6	MULTI-MSMS	A375_MHC_IP_R2	2	372.6015625	3	372.213358	1113.61824	0.48563	0.00018076	-0.60723	-0.00022602	-0.1216	-4.5261E-05	372.2130926456298	41.898	0.35762	42.672	42.504	42.862	0.77451					13	6	3	0	0	0	0.72006	1	15602	15602		3.3196	0.58445	1	1453100	+		26247	16462	18857	18998	25702	25702					0.06598004885699993
KLTSALFNA	9	Unmodified	_KLTSALFNA_					0	0	0		ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-SECPEP	A375_MHC_IP_R2	2	483.1763000488281	2	482.776742	963.538931	-0.63652	-0.0003073	-2.7584	-0.0013317	-3.3949	-0.001639	482.77668888183166	62.616	0.96239	63.359	62.774	63.736	0.74263					20	18	2	0	0	0	0.40377	1	23767	23767		34.932	7.3033	1	1961200			26248	3562	18858	18999	25703	25703					0.05570357931549097
KLTSALFNA	9	Unmodified	_KLTSALFNA_					0	0	0		ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-MATCH	A375_MHC_IP_R1	1		2	482.776742	963.538931	-0.29964	-0.00014466	-4.592	-0.0022169	-4.8916	-0.0023616	482.7764650337114	63.588	0.51164	63.588	63.326	63.837	0	0.11486	-0.00096282	NaN	34.932	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1144700			26249	3562	18858	18999							0.05570357931549097
KLVAAGVDYK	10	Unmodified	_KLVAAGVDYK_					0	0	0		tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	355.5794982910156	3	355.209725	1062.60735	-0.14772	-5.2471E-05	-0.20169	-7.1642E-05	-0.34941	-0.00012411	355.20960008612815	27.633	0.45507	27.633	27.432	27.887	0					26	8	4	0	0	0	0.70442	1	8357	8357		10.315	0.16466	1	11636000			26250	29678	18859	19000	25704	25704					0.07854602511406483
KLVARIMQW	9	Unmodified	_KLVARIMQW_					0	0	0			REV__ENST00000369331.8_1_10:115439067-115480867:+|nuORF	REV__ENST00000369331.8_1_10:115439067-115480867:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	382.62689208984375	3	382.226833	1143.65867	0.37192	0.00014216	-0.097681	-3.7336E-05	0.27424	0.00010482	382.2267754040743	33.786	0.9605	33.786	33.496	34.456	0					35	18	3	0	0	0	0.64136	1	11168	11168		12.241	0	1	4964800	+		26251	24008	18860	19001	25705	25705					0.0925864800447016
KLVDFVIHF	9	Unmodified	_KLVDFVIHF_					0	0	0		ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4;ENST00000440787.5_1_3:9845376-9847896:+|nuORF;nc|ENSG00000241553|P59998-4|ARPC4	ENSG00000241553|ENST00000397261|ARPC4	ENSG00000241553|ENST00000397261|ARPC4	MULTI-MSMS	A375_MHC_IP_R1	1	559.7232666015625	2	559.32386	1116.63317	-0.25025	-0.00013997	0.11573	6.4728E-05	-0.13452	-7.524E-05	559.323888305067	108.03	0.66	108.03	107.65	108.31	0					28	12	3	0	0	0	0.0096967	1	39606	39606		134.3	85.95	1	2517400			26252	9784	18861	19002	25706	25706					0.07951496753685205
KLVDFVIHF	9	Unmodified	_KLVDFVIHF_					0	0	0		ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4;ENST00000440787.5_1_3:9845376-9847896:+|nuORF;nc|ENSG00000241553|P59998-4|ARPC4	ENSG00000241553|ENST00000397261|ARPC4	ENSG00000241553|ENST00000397261|ARPC4	MULTI-MSMS	A375_MHC_IP_R2	2	559.7237548828125	2	559.32386	1116.63317	-0.76075	-0.00042551	-0.43673	-0.00024427	-1.1975	-0.00066978	559.3236426205557	106.93	0.65947	107.69	107.44	108.1	0.75977					22	12	2	0	0	0	0.014055	1	40414	40414		110.67	64.654	1	2942400			26253	9784	18861	19002	25707	25707					0.07951496753685205
KLVDPERDMSL	11	Unmodified	_KLVDPERDMSL_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-MSMS	A375_MHC_IP_R1	1	435.29559326171875	3	434.895589	1301.66494	-0.051017	-2.2187E-05	0.11453	4.9809E-05	0.063514	2.7622E-05	434.8957058840134	54.46	0.35559	54.46	54.263	54.619	0					11	6	2	0	0	0	0.69246	1	19475	19475		16.137	1.18	1	1937300			26254	4678	18862	19003	25708	25708					0.026170766546783852
KLVDPERDMSL	11	Unmodified	_KLVDPERDMSL_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-MATCH	A375_MHC_IP_R2	2		3	434.895589	1301.66494	-0.76297	-0.00033181	-0.059242	-2.5764E-05	-0.82222	-0.00035758	434.89528972408954	53.628	0.51214	54.379	54.097	54.609	0.75105	-0.040712	-0.00020295	NaN	16.137	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1698000			26255	4678	18862	19003							0.026170766546783852
KLVEFDFLGA	10	Unmodified	_KLVEFDFLGA_					0	0	0		ENSG00000013810|ENST00000313288|TACC3;TACC3|p.A598T|1|0.19|ENSG00000013810|chr4:1737284-1737284|G/A|missense_variant;TACC3|p.Q691Sfs*10|1|0.11|ENSG00000013810|chr4:1740831-1740832|-/T|frameshift_variant;ENST00000484651.5_1_4:1725148-1739714:+|nuORF	ENSG00000013810|ENST00000313288|TACC3	ENSG00000013810|ENST00000313288|TACC3	MULTI-SECPEP	A375_MHC_IP_R1	1	570.2099609375	2	569.810782	1137.60701	-0.020896	-1.1907E-05	-0.48522	-0.00027648	-0.50611	-0.00028839	569.8104881730718	116.65	0.55859	116.65	116.29	116.85	0					17	10	2	0	0	0	0.54012	1	42791	42791		45.74	1.9675	1	7537800			26256	1027	18863	19004	25709	25709					0.04371182791555839
KLVEFDFLGA	10	Unmodified	_KLVEFDFLGA_					0	0	0		ENSG00000013810|ENST00000313288|TACC3;TACC3|p.A598T|1|0.19|ENSG00000013810|chr4:1737284-1737284|G/A|missense_variant;TACC3|p.Q691Sfs*10|1|0.11|ENSG00000013810|chr4:1740831-1740832|-/T|frameshift_variant;ENST00000484651.5_1_4:1725148-1739714:+|nuORF	ENSG00000013810|ENST00000313288|TACC3	ENSG00000013810|ENST00000313288|TACC3	MULTI-MATCH	A375_MHC_IP_R2	2		2	569.810782	1137.60701	-0.14654	-8.3497E-05	0.066734	3.8026E-05	-0.079801	-4.5472E-05	569.8110483086203	115.83	0.55883	116.52	116.14	116.7	0.68999	-0.067027	0.00024643	NaN	45.74	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4642100			26257	1027	18863	19004							0.04371182791555839
KLVELPYTV	9	Unmodified	_KLVELPYTV_					0	0	0		ENST00000556124.3_1_14:20916255-20917133:-|nuORF;ENST00000555656.5_1_14:20915401-20917107:-|nuORF;ENSG00000092094|ENST00000206542|OSGEP	ENST00000556124.3_1_14:20916255-20917133:-|nuORF	ENST00000556124.3_1_14:20916255-20917133:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	531.7151489257812	2	531.3157	1060.61685	-0.80703	-0.00042879	-0.015697	-8.3399E-06	-0.82272	-0.00043713	531.3157966380139	85.614	0.50884	85.614	85.412	85.921	0					17	9	2	0	0	0	0.0095015	2	31379	31379;31442		118.07	35.539	1	2859800			26258	1992	18864	19005	25710;25711	25710					0.08896370796924202
KLVELPYTV	9	Unmodified	_KLVELPYTV_					0	0	0		ENST00000556124.3_1_14:20916255-20917133:-|nuORF;ENST00000555656.5_1_14:20915401-20917107:-|nuORF;ENSG00000092094|ENST00000206542|OSGEP	ENST00000556124.3_1_14:20916255-20917133:-|nuORF	ENST00000556124.3_1_14:20916255-20917133:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	531.714599609375	2	531.3157	1060.61685	-0.53926	-0.00028652	0.22157	0.00011773	-0.31769	-0.00016879	531.3153236692102	84.797	0.66005	85.533	85.171	85.831	0.73601					25	12	3	0	0	0	0.032066	1	32208	32208		79.596	30.042	1	3158600			26259	1992	18864	19005	25712	25712					0.08896370796924202
KLVEYIVKA	9	Unmodified	_KLVEYIVKA_					0	0	0		nc|ENSG00000160953|Q2TAK8-2|PWWP3A;ENST00000587460.5_1_19:1358605-1376572:+|nuORF;ENSG00000160953|ENST00000591337|PWWP3A;nc|ENSG00000160953|Q2TAK8-3|PWWP3A;ENST00000591433.5_1_19:1358605-1371443:+|nuORF	nc|ENSG00000160953|Q2TAK8-2|PWWP3A	nc|ENSG00000160953|Q2TAK8-2|PWWP3A	MULTI-SECPEP	A375_MHC_IP_R1	1	532.2313842773438	2	531.831517	1061.64848	-0.36356	-0.00019335	-0.078878	-4.195E-05	-0.44244	-0.0002353	531.8314241587331	49.733	0.61156	49.733	49.49	50.101	0					21	11	3	0	0	0	0.20989	1	17596	17596		75.571	29.831	1	3685100			26260	6451	18865	19006	25713	25713					0.12012363550911687
KLVEYIVKA	9	Unmodified	_KLVEYIVKA_					0	0	0		nc|ENSG00000160953|Q2TAK8-2|PWWP3A;ENST00000587460.5_1_19:1358605-1376572:+|nuORF;ENSG00000160953|ENST00000591337|PWWP3A;nc|ENSG00000160953|Q2TAK8-3|PWWP3A;ENST00000591433.5_1_19:1358605-1371443:+|nuORF	nc|ENSG00000160953|Q2TAK8-2|PWWP3A	nc|ENSG00000160953|Q2TAK8-2|PWWP3A	MULTI-SECPEP	A375_MHC_IP_R2	2	532.2308959960938	2	531.831517	1061.64848	-0.76765	-0.00040826	-0.067961	-3.6144E-05	-0.83561	-0.0004444	531.8313659485467	48.797	0.50984	49.554	49.282	49.792	0.75736					18	9	3	0	0	0	0.2733	1	18311	18311		53.317	13.078	1	4544600			26261	6451	18865	19006	25714	25714					0.12012363550911687
KLVFIILLKIK	11	Unmodified	_KLVFIILLKIK_					0	0	0		ENST00000273258.3_1_3:69154230-69154353:+|nuORF	ENST00000273258.3_1_3:69154230-69154353:+|nuORF	ENST00000273258.3_1_3:69154230-69154353:+|nuORF	MSMS	A375_MHC_IP_R1	1	443.3326416015625	3	443.319498	1326.93667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.96	1	131.96	131.46	132.46	0								0	0	0	0.1636	1	50880	50880		0	0	1				26262	10390	18866	19007	25715	25715					0.28627458809114614
KLVGEFLEV	9	Unmodified	_KLVGEFLEV_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-MSMS	A375_MHC_IP_R1	1	517.7200927734375	2	517.30005	1032.58555	-0.38258	-0.00019791	0.011638	6.0201E-06	-0.37095	-0.00019189	517.3000276988391	92.209	0.96374	92.209	91.857	92.821	0					45	18	4	0	0	0	0.018261	1	33884	33884		85.642	23.069	1	14198000			26263	1382	18867	19008	25716	25716					0.07055797762859584
KLVGEFLEV	9	Unmodified	_KLVGEFLEV_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	517.7191772460938	2	517.30005	1032.58555	-0.64812	-0.00033527	0.33602	0.00017382	-0.31211	-0.00016145	517.3002375137872	91.311	0.71034	92.046	91.717	92.427	0.7345					35	13	4	0	0	0	0.087712	1	34726	34726		66.457	20.757	1	17034000			26264	1382	18867	19008	25717	25717					0.07055797762859584
KLVKEVIAV	9	Unmodified	_KLVKEVIAV_					0	0	0		nc|ENSG00000105379|P38117-2|ETFB;ENSG00000105379|ENST00000309244|ETFB	nc|ENSG00000105379|P38117-2|ETFB	nc|ENSG00000105379|P38117-2|ETFB	MULTI-SECPEP	A375_MHC_IP_R1	1	500.2340393066406	2	499.83406	997.653567	-0.16788	-8.391E-05	0.16299	8.1466E-05	-0.0048895	-2.444E-06	499.8340950006696	45.615	1.0607	45.615	45.334	46.395	0					57	20	4	0	0	0	0.05217	1	15929	15929		79.596	37.641	1	84795000			26265	14525	18868	19009	25718	25718					0.1546466741350514
KLVKEVIAV	9	Unmodified	_KLVKEVIAV_					0	0	0		nc|ENSG00000105379|P38117-2|ETFB;ENSG00000105379|ENST00000309244|ETFB	nc|ENSG00000105379|P38117-2|ETFB	nc|ENSG00000105379|P38117-2|ETFB	MULTI-SECPEP	A375_MHC_IP_R2	2	500.23394775390625	2	499.83406	997.653567	-0.6355	-0.00031765	0.060964	3.0472E-05	-0.57454	-0.00028717	499.834032591168	44.596	1.2208	45.365	45.086	46.307	0.7691					59	23	4	0	0	0	0.011066	1	16592	16592		114.2	47.745	1	87338000			26266	14525	18868	19009	25719	25719					0.1546466741350514
KLVKSIFRV	9	Unmodified	_KLVKSIFRV_					0	0	0		nc|ENSG00000135457|Q12800-2|TFCP2;nc|ENSG00000135457|Q12800-3|TFCP2;nc|ENSG00000135457|Q12800-4|TFCP2;ENSG00000135457|ENST00000257915|TFCP2	nc|ENSG00000135457|Q12800-2|TFCP2	nc|ENSG00000135457|Q12800-2|TFCP2	MULTI-SECPEP	A375_MHC_IP_R1	1	364.263427734375	3	363.90961	1088.707	0.58826	0.00021407	-0.97256	-0.00035392	-0.38429	-0.00013985	364.24366320655895	45.285	0.35337	45.285	45.081	45.434	0					9	6	2	0	0	0	0.79966	1	15882	15882		3.5871	3.3512	1	833740			26267	4688	18869	19010	25720	25720					0.16619464916016113
KLVKWKKRKKK	11	Unmodified	_KLVKWKKRKKK_					0	0	0			REV__ENST00000471830.1_1_20:3888626-3888701:+|nuORF	REV__ENST00000471830.1_1_20:3888626-3888701:+|nuORF	MSMS	A375_MHC_IP_R2	2	735.52587890625	2	735.51138	1469.00821	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.744	1	93.483	92.983	93.983	0.73902								0	0	0	0.1636	1	35266	35266		0	0	1		+		26268	25126	18870	19011	25721	25721					0.2924639128632407
KLVNILVQL	9	Unmodified	_KLVNILVQL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	A375_MHC_IP_R1	1	520.7471313476562	2	520.347335	1038.68012	-0.33805	-0.0001759	-0.047662	-2.4801E-05	-0.38571	-0.0002007	520.3469650298517	110.19	0.50735	110.19	109.88	110.39	0					21	9	3	0	0	0	0.077132	1	40398	40398		54.774	18.647	1	2009700			26269	3337	18871	19012	25722	25722					0.16232356304840323
KLVPAETWTS	10	Unmodified	_KLVPAETWTS_					0	0	0		ENST00000390298.2_1_22:22749595-22749685:+|nuORF	ENST00000390298.2_1_22:22749595-22749685:+|nuORF	ENST00000390298.2_1_22:22749595-22749685:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	566.7062377929688	2	566.305864	1130.59717	-0.45237	-0.00025618	0.096682	5.4751E-05	-0.35569	-0.00020143	566.3058420030935	30.332	0.55806	31.05	30.759	31.317	0.71857					18	10	3	0	0	0	0.8125	1	10661	10661		24.021	3.606	1	3485800			26270	11405	18872	19013	25723	25723					0.037099947861634064
KLVPFIQKA	9	Unmodified	_KLVPFIQKA_					0	0	0		nc|ENSG00000136160|P24530-2|EDNRB;ENSG00000136160|ENST00000646607|EDNRB;chr13:77918624-77975347|131|46.99|0.06|9.71|-|ENST00000646948|EDNRB,EDNRB;nc|ENSG00000136160|P24530-3|EDNRB;EDNRB|p.S191Efs*8|1|0.14|ENSG00000136160|chr13:77903521-77903522|-/A|frameshift_variant	nc|ENSG00000136160|P24530-2|EDNRB	nc|ENSG00000136160|P24530-2|EDNRB	MULTI-SECPEP	A375_MHC_IP_R1	1	522.7338256835938	2	522.334227	1042.6539	-0.51401	-0.00026849	-0.17979	-9.391E-05	-0.6938	-0.0003624	522.3340436728682	50.587	0.5078	50.587	50.357	50.864	0					22	9	3	0	0	0	0.05755	1	17908	17908		81.613	56.214	1	14347000			26271	424	18873	19014	25724	25724					0.13428087133365807
KLVPFIQKA	9	Unmodified	_KLVPFIQKA_					0	0	0		nc|ENSG00000136160|P24530-2|EDNRB;ENSG00000136160|ENST00000646607|EDNRB;chr13:77918624-77975347|131|46.99|0.06|9.71|-|ENST00000646948|EDNRB,EDNRB;nc|ENSG00000136160|P24530-3|EDNRB;EDNRB|p.S191Efs*8|1|0.14|ENSG00000136160|chr13:77903521-77903522|-/A|frameshift_variant	nc|ENSG00000136160|P24530-2|EDNRB	nc|ENSG00000136160|P24530-2|EDNRB	MULTI-SECPEP	A375_MHC_IP_R2	2	522.7337036132812	2	522.334227	1042.6539	-0.87676	-0.00045796	0.11361	5.9344E-05	-0.76315	-0.00039862	522.334249671514	49.555	0.50536	50.313	50.046	50.551	0.75737					26	9	4	0	0	0	0.006701	1	18608	18608		149.99	149.99	1	15976000			26272	424	18873	19014	25725	25725					0.13428087133365807
KLVPFLKKV	9	Unmodified	_KLVPFLKKV_					0	0	0		nc|ENSG00000103342|P15170|GSPT1;nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1;ENSG00000189369|ENST00000340438|GSPT2	nc|ENSG00000103342|P15170|GSPT1;ENSG00000189369|ENST00000340438|GSPT2	ENSG00000189369|ENST00000340438|GSPT2	MULTI-MSMS	A375_MHC_IP_R1	1	358.31451416015625	3	357.914472	1070.72159	0.025714	9.2034E-06	-0.10417	-3.7283E-05	-0.078454	-2.808E-05	357.9143993800209	47.237	1.1193	47.237	46.952	48.071	0					51	21	4	0	0	0	0.0098859	2	16589	16564;16589		117.76	72.061	1	48150000			26273	2445;8982	18874	19015	25726;25727	25727					0.189055370641654
KLVPFLKKV	9	Unmodified	_KLVPFLKKV_					0	0	0		nc|ENSG00000103342|P15170|GSPT1;nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1;ENSG00000189369|ENST00000340438|GSPT2	nc|ENSG00000103342|P15170|GSPT1;ENSG00000189369|ENST00000340438|GSPT2	ENSG00000189369|ENST00000340438|GSPT2	MULTI-SECPEP	A375_MHC_IP_R1	1	536.7675170898438	2	536.36807	1070.72159	-0.74742	-0.00040089	-0.052563	-2.8193E-05	-0.79998	-0.00042908	536.3679867325509	47.243	0.41173	47.243	47.055	47.467	0					17	7	3	0	0	0	0.16764	1	16633	16633		51.63	31.176	1	4411800			26274	2445;8982	18874	19015	25728	25728					0.189055370641654
KLVPFLKKV	9	Unmodified	_KLVPFLKKV_					0	0	0		nc|ENSG00000103342|P15170|GSPT1;nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1;ENSG00000189369|ENST00000340438|GSPT2	nc|ENSG00000103342|P15170|GSPT1;ENSG00000189369|ENST00000340438|GSPT2	ENSG00000189369|ENST00000340438|GSPT2	MULTI-MSMS	A375_MHC_IP_R2	2	358.31414794921875	3	357.914472	1070.72159	-0.14307	-5.1207E-05	0.035962	1.2871E-05	-0.10711	-3.8335E-05	357.9144406111145	46.015	1.0648	46.78	46.552	47.617	0.76519					58	20	5	0	0	0	0.0098859	3	17202	17165;17202;17410		117.76	72.061	1	62306000			26275	2445;8982	18874	19015	25729;25730;25731	25730					0.189055370641654
KLVPQQLAH	9	Unmodified	_KLVPQQLAH_					0	0	0		ENSG00000135940|ENST00000258424|COX5B	ENSG00000135940|ENST00000258424|COX5B	ENSG00000135940|ENST00000258424|COX5B	MULTI-SECPEP	A375_MHC_IP_R1	1	517.7108764648438	2	517.311284	1032.60801	-1	-0.00051732	0.10936	5.6574E-05	-0.89065	-0.00046074	517.3112895850484	29.277	0.35573	29.277	29.047	29.403	0					16	6	3	0	0	0	0.01139	1	9119	9119		92.822	50.983	1	18936000			26276	4731	18875	19016	25732	25732					0.09301441951151901
KLVPQQLAH	9	Unmodified	_KLVPQQLAH_					0	0	0		ENSG00000135940|ENST00000258424|COX5B	ENSG00000135940|ENST00000258424|COX5B	ENSG00000135940|ENST00000258424|COX5B	MULTI-SECPEP	A375_MHC_IP_R2	2	517.710693359375	2	517.311284	1032.60801	-1.2192	-0.00063069	0.020113	1.0405E-05	-1.1991	-0.00062029	517.3112843697018	28.509	0.30369	29.187	28.96	29.263	0.67857					13	5	4	0	0	0	0.030624	1	9837	9837		88.904	23.669	1	20411000			26277	4731	18875	19016	25733	25733					0.09301441951151901
KLVPVFQRGS	10	Unmodified	_KLVPVFQRGS_					0	0	0		ENST00000550505.5_2_12:117299165-117314498:-|nuORF;ENST00000552092.1_1_12:117299165-117317026:-|nuORF	ENST00000550505.5_2_12:117299165-117314498:-|nuORF	ENST00000550505.5_2_12:117299165-117314498:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	378.2887878417969	3	377.560869	1129.66078	-0.30899	-0.00011666	0.23184	8.7535E-05	-0.077147	-2.9128E-05	377.56108769351766	33.971	0.30309	34.724	34.5	34.803	0.75225					8	5	2	0	0	0	0.91773	1	12187	12187		9.7643	6.692	1	1207000			26278	13372	18876	19017	25734	25734					0.1011340001393819
KLVQRHRIH	9	Unmodified	_KLVQRHRIH_					0	0	0		SGSM1|p.E199K|1|0.6|ENSG00000167037|chr22:24855356-24855356|G/A|missense_variant	SGSM1|p.E199K|1|0.6|ENSG00000167037|chr22:24855356-24855356|G/A|missense_variant	SGSM1|p.E199K|1|0.6|ENSG00000167037|chr22:24855356-24855356|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	395.6169128417969	3	396.247507	1185.72069	-0.39755	-0.00015753	0.23665	9.3773E-05	-0.16089	-6.3754E-05	396.24754328376673	26.399	0.86178	26.399	25.866	26.728	0					36	16	3	0	0	0	0.81275	1	7965	7965		2.4985	2.4985	1	14443000			26279	29148	18877	19018	25735	25735					0.13526135467850509
KLVWDKDKN	9	Unmodified	_KLVWDKDKN_					0	0	0			REV__nc|ENSG00000137812|Q8NG31-3|KNL1	REV__nc|ENSG00000137812|Q8NG31-3|KNL1	MULTI-SECPEP	A375_MHC_IP_R2	2	382.2803039550781	3	382.548629	1144.62406	-0.52342	-0.00020023	1.4411	0.0005513	0.91772	0.00035107	382.5491092955928	25.107	0.15302	25.751	25.668	25.822	0.64368					4	2	2	0	0	0	0.73363	1	8357	8357		7.1017	2.6956	1	3572000	+		26280	19035	18878	19019	25736	25736					0.05753103397364612
KLVYNIHLT	9	Unmodified	_KLVYNIHLT_					0	0	0		ENST00000427498.1_1_1:242528894-242529077:+|nuORF	ENST00000427498.1_1_1:242528894-242529077:+|nuORF	ENST00000427498.1_1_1:242528894-242529077:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	367.6485290527344	3	367.553603	1099.63898	0.070679	2.5978E-05	-1.9074	-0.00070108	-1.8367	-0.0006751	367.5526377413153	19.293	0.24938	19.293	19.221	19.471	0					11	6	2	0	0	0	0.54812	1	4677	4677		19.362	0	1	39982000			26281	11822	18879	19020	25737	25737					0.09314595265368553
KLWADRISL	9	Unmodified	_KLWADRISL_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	MULTI-MSMS	A375_MHC_IP_R1	1	551.723876953125	2	551.324391	1100.63423	-0.48249	-0.00026601	0.2947	0.00016247	-0.18779	-0.00010353	551.3245771984892	70.78	0.56294	70.78	70.494	71.057	0					30	10	4	0	0	0	0.163	1	25703	25703		49.742	15.639	1	9143000			26282	7316	18880	19021	25738	25738					0.08793711122621062
KLWADRISL	9	Unmodified	_KLWADRISL_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	MULTI-SECPEP	A375_MHC_IP_R2	2	551.7240600585938	2	551.324391	1100.63423	-0.70779	-0.00039022	0.4386	0.00024181	-0.26919	-0.00014841	551.32453772128	69.904	0.50906	70.638	70.335	70.844	0.73421					25	9	3	0	0	0	0.24655	1	26467	26467		40.725	17.989	1	6905100			26283	7316	18880	19021	25739	25739					0.08793711122621062
KLWDLTKSDI	10	Unmodified	_KLWDLTKSDI_					0	0	0		ENST00000400286.2_1_13:86373165-86373240:-|nuORF	ENST00000400286.2_1_13:86373165-86373240:-|nuORF	ENST00000400286.2_1_13:86373165-86373240:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	609.22314453125	2	609.840071	1217.66559	-0.32278	-0.00019684	-0.53481	-0.00032615	-0.85759	-0.00052299	609.839313387473	73.215	0.40598	73.215	73.082	73.488	0					11	7	2	0	0	0	0.92055	1	26671	26671		12.228	7.6987	1	1233300			26284	11554	18881	19022	25740	25740					0.06546239366048212
KLWGQSIQL	9	Unmodified	_KLWGQSIQL_					0	0	0		ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1929321289062	2	536.811116	1071.60768	-0.90124	-0.00048379	0.2414	0.00012959	-0.65983	-0.00035421	536.8111383552159	84.511	0.50726	84.511	84.241	84.749	0					23	9	3	0	0	0	0.090157	1	30943	30943		37.075	37.075	1	2984100			26285	3413	18882	19023	25741	25741					0.07474022231281197
KLWGQSIQL	9	Unmodified	_KLWGQSIQL_					0	0	0		ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	MULTI-SECPEP	A375_MHC_IP_R2	2	537.2099609375	2	536.811116	1071.60768	-0.82686	-0.00044387	-0.40205	-0.00021582	-1.2289	-0.00065969	536.8107927070904	83.659	0.45964	84.398	84.152	84.611	0.73962					17	8	3	0	0	0	0.16764	1	31787	31787		51.63	13.454	1	2228900			26286	3413	18882	19023	25742	25742					0.07474022231281197
KLWHWLNK	8	Unmodified	_KLWHWLNK_					0	0	0		ENSG00000106771|ENST00000374586|TMEM245	ENSG00000106771|ENST00000374586|TMEM245	ENSG00000106771|ENST00000374586|TMEM245	MSMS	A375_MHC_IP_R2	2	562.968994140625	2	562.821818	1123.62908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.347	1	20.957	20.457	21.457	0.61029								0	0	0	0.16876	1	6326	6326		4.756	1.4747	1				26287	2710	18883	19024	25743	25743					0.07221452050657717
KLWILPRLL	9	Unmodified	_KLWILPRLL_					0	0	0		ENST00000484040.1_1_2:213872301-213872346:-|nuORF	ENST00000484040.1_1_2:213872301-213872346:-|nuORF	ENST00000484040.1_1_2:213872301-213872346:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	384.608154296875	3	384.593622	1150.75904	-0.17317	-6.6601E-05	1.0556	0.00040598	0.88244	0.00033938	384.59391923898664	45.359	0.3046	46.124	45.897	46.201	0.76519					6	5	2	0	0	0	0.69317	1	16932	16932		7.609	4.8738	1	744940			26288	12553	18884	19025	25744	25744					0.18968628329776038
KLWKENPGL	9	Unmodified	_KLWKENPGL_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	A375_MHC_IP_R1	1	543.2107543945312	2	542.811116	1083.60768	-0.95877	-0.00052043	2.9782	0.0016166	2.0194	0.0010962	542.8127325661592	41.56	0.51078	41.56	41.215	41.725	0					24	9	3	0	0	0	0.055122	1	14376	14376		100.09	52.342	1	7856700			26289	1916	18885	19026	25745	25745					0.06922022231265146
KLWPEASKV	9	Unmodified	_KLWPEASKV_					0	0	0		ENSG00000151835|ENST00000382292|SACS;SACS|p.L2956*|1|0.6|ENSG00000151835|chr13:23335009-23335009|A/-|frameshift_variant;SACS|p.P3025Hfs*21|1|0.32|ENSG00000151835|chr13:23334784-23334802|AGTAAATTGTCAAAAAATG/-|frameshift_variant	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	A375_MHC_IP_R1	1	353.60614013671875	3	353.206203	1056.59678	-0.0026127	-9.2283E-07	-0.13236	-4.675E-05	-0.13497	-4.7673E-05	353.20616749032473	40.428	0.509	40.428	40.151	40.66	0					22	9	3	0	0	0	0.65527	1	13914	13914		12.175	0	1	2416300			26290	5930	18886	19027	25746	25746					0.0707461985698501
KLWPEASKV	9	Unmodified	_KLWPEASKV_					0	0	0		ENSG00000151835|ENST00000382292|SACS;SACS|p.L2956*|1|0.6|ENSG00000151835|chr13:23335009-23335009|A/-|frameshift_variant;SACS|p.P3025Hfs*21|1|0.32|ENSG00000151835|chr13:23334784-23334802|AGTAAATTGTCAAAAAATG/-|frameshift_variant	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	A375_MHC_IP_R1	1	529.7054443359375	2	529.305667	1056.59678	-0.45966	-0.0002433	-1.7018	-0.00090076	-2.1614	-0.0011441	529.3045766797246	40.562	0.76255	40.562	40.1	40.863	0					35	14	3	0	0	0	0.023846	1	13878	13878		104.48	50.652	1	7259800			26291	5930	18886	19027	25747	25747					0.0707461985698501
KLWPEASKV	9	Unmodified	_KLWPEASKV_					0	0	0		ENSG00000151835|ENST00000382292|SACS;SACS|p.L2956*|1|0.6|ENSG00000151835|chr13:23335009-23335009|A/-|frameshift_variant;SACS|p.P3025Hfs*21|1|0.32|ENSG00000151835|chr13:23334784-23334802|AGTAAATTGTCAAAAAATG/-|frameshift_variant	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	A375_MHC_IP_R2	2	353.606201171875	3	353.206203	1056.59678	-0.27804	-9.8206E-05	0.10119	3.5741E-05	-0.17685	-6.2465E-05	353.2062209895587	39.435	0.45667	40.209	40.016	40.473	0.77451					15	8	2	0	0	0	0.21241	1	14610	14610		29.281	11.838	1	4299700			26292	5930	18886	19027	25748	25748					0.0707461985698501
KLWPEASKV	9	Unmodified	_KLWPEASKV_					0	0	0		ENSG00000151835|ENST00000382292|SACS;SACS|p.L2956*|1|0.6|ENSG00000151835|chr13:23335009-23335009|A/-|frameshift_variant;SACS|p.P3025Hfs*21|1|0.32|ENSG00000151835|chr13:23334784-23334802|AGTAAATTGTCAAAAAATG/-|frameshift_variant	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	A375_MHC_IP_R2	2	529.7053833007812	2	529.305667	1056.59678	-0.61878	-0.00032752	0.058384	3.0903E-05	-0.5604	-0.00029662	529.3056240016815	39.451	0.50806	40.225	39.914	40.422	0.77451					22	9	3	0	0	0	0.011465	1	14584	14584		114.5	49.262	1	6208400			26293	5930	18886	19027	25749	25749					0.0707461985698501
KLWPLPKAL	9	Unmodified	_KLWPLPKAL_					0	0	0		ENSG00000183751|ENST00000568546|TBL3;ENST00000564171.1_1_16:2026070-2027324:+|nuORF	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-SECPEP	A375_MHC_IP_R2	2	533.7437744140625	2	533.344595	1064.67464	-0.74795	-0.00039891	-0.10856	-5.7901E-05	-0.85651	-0.00045682	533.344257933798	77.648	0.45847	78.391	78.113	78.572	0.74293					13	8	2	0	0	0	0.73926	1	29457	29457		13.042	8.2865	1	1760400			26294	8524	18887	19028	25750	25750					0.1448867751303169
KLWPLPKAL	9	Unmodified	_KLWPLPKAL_					0	0	0		ENSG00000183751|ENST00000568546|TBL3;ENST00000564171.1_1_16:2026070-2027324:+|nuORF	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MATCH	A375_MHC_IP_R1	1		2	533.344595	1064.67464	-0.46545	-0.00024824	0.3125	0.00016667	-0.15294	-8.1572E-05	533.3447277104838	78.687	0.50589	78.687	78.454	78.96	0	0.14823	0.00015865	NaN	18.146	16	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2270100			26295	8524	18887	19028							0.1448867751303169
KLWPQMFIEL	10	Unmodified	_KLWPQMFIEL_					0	0	0		ENST00000561131.2_1_15:71341123-71341948:+|nuORF;nc|ENSG00000137821|Q8IUZ0-3|LRRC49;nc|ENSG00000137821|Q8IUZ0-4|LRRC49;ENSG00000137821|ENST00000260382|LRRC49;nc|ENSG00000137821|Q8IUZ0-2|LRRC49	ENST00000561131.2_1_15:71341123-71341948:+|nuORF	ENST00000561131.2_1_15:71341123-71341948:+|nuORF	MSMS	A375_MHC_IP_R2	2	652.8943481445312	2	652.857209	1303.69987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.192	1	90.924	90.424	91.424	0.7318								0	0	0	0.15583	1	34316	34316		1.6526	0	1				26296	4923	18888	19029	25751	25751					0.06016364253309803
KLWSETFDV	9	Unmodified	_KLWSETFDV_					0	0	0		ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	MULTI-MSMS	A375_MHC_IP_R1	1	563.1849975585938	2	562.784764	1123.55498	-0.52277	-0.00029421	0.36472	0.00020526	-0.15804	-8.8944E-05	562.7847116489943	89.885	0.45412	89.885	89.628	90.083	0					12	8	2	0	0	0	0.39434	1	33066	33066		24.991	1.2012	1	1408100			26297	6752	18889	19030	25752	25752					-0.0018598062220007705
KLWSRSLKL	9	Unmodified	_KLWSRSLKL_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B;nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;ENST00000494435.5_1_21:47924311-47965916:+|nuORF;nc|ENSG00000160305|Q14689-5|DIP2A	ENSG00000066084|ENST00000301180|DIP2B;ENSG00000160305|ENST00000417564|DIP2A	ENSG00000066084|ENST00000301180|DIP2B	MULTI-MSMS	A375_MHC_IP_R1	1	377.9731140136719	3	377.572998	1129.69716	0.47695	0.00018008	-0.27488	-0.00010379	0.20207	7.6297E-05	377.5728338230115	45.898	0.50854	45.898	45.585	46.094	0					15	9	2	0	0	0	0.074562	2	16084	16023;16084		55.235	5.7074	1	1943900			26298	1403;6415	18890	19031	25753;25754	25754					0.13750276910650427
KLWSRSLKL	9	Unmodified	_KLWSRSLKL_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B;nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;ENST00000494435.5_1_21:47924311-47965916:+|nuORF;nc|ENSG00000160305|Q14689-5|DIP2A	ENSG00000066084|ENST00000301180|DIP2B;ENSG00000160305|ENST00000417564|DIP2A	ENSG00000066084|ENST00000301180|DIP2B	MULTI-MSMS	A375_MHC_IP_R2	2	377.9730529785156	3	377.572998	1129.69716	0.047517	1.7941E-05	0.064108	2.4206E-05	0.11162	4.2147E-05	377.57293082554185	44.697	0.56146	45.466	45.289	45.85	0.7691					17	10	3	0	0	0	0.033808	1	16681	16681		71.708	14.459	1	3017000			26299	1403;6415	18890	19031	25755	25755					0.13750276910650427
KLWTSLVNL	9	Unmodified	_KLWTSLVNL_					0	0	0		ENST00000504224.5_3_4:2498845-2502421:+|nuORF;ENST00000513643.5_1_4:2492220-2502421:+|nuORF	ENST00000504224.5_3_4:2498845-2502421:+|nuORF	ENST00000504224.5_3_4:2498845-2502421:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	537.7210693359375	2	537.321317	1072.62808	-0.42811	-0.00023003	0.47476	0.0002551	0.046646	2.5064E-05	537.3214067864608	108.53	0.55811	108.53	108.26	108.81	0					25	10	3	0	0	0	0.061442	1	39782	39782		82.529	38.671	1	4950000			26300	12816	18891	19032	25756	25756					0.09467192891088416
KLWTSLVNL	9	Unmodified	_KLWTSLVNL_					0	0	0		ENST00000504224.5_3_4:2498845-2502421:+|nuORF;ENST00000513643.5_1_4:2492220-2502421:+|nuORF	ENST00000504224.5_3_4:2498845-2502421:+|nuORF	ENST00000504224.5_3_4:2498845-2502421:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	537.7201538085938	2	537.321317	1072.62808	-0.92272	-0.0004958	0.0031464	1.6906E-06	-0.91957	-0.0004941	537.3211993052064	107.49	0.61043	108.24	107.9	108.51	0.75436					25	11	3	0	0	0	0.06083	1	40604	40604		60.074	16.216	1	3936600			26301	12816	18891	19032	25757	25757					0.09467192891088416
KLYAGLKEL	9	Unmodified	_KLYAGLKEL_					0	0	0		nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1612548828125	2	517.815867	1033.61718	-0.56947	-0.00029488	0.042154	2.1828E-05	-0.52732	-0.00027305	517.8159911832344	46.625	0.35637	47.391	47.21	47.567	0.76519					16	6	3	0	0	0	0.59614	1	17424	17424		28.495	28.495	1	5533400			26302	7838	18892	19033	25758	25758					0.10171790516801593
KLYDGFQYL	9	Unmodified	_KLYDGFQYL_					0	0	0		nc|ENSG00000143393|Q9UBF8-3|PI4KB;nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	MULTI-SECPEP	A375_MHC_IP_R1	1	574.1947021484375	2	573.795132	1145.57571	-0.19059	-0.00010936	0.556	0.00031903	0.36541	0.00020967	573.7953067628808	91.831	0.96041	91.831	91.452	92.413	0					53	18	5	0	0	0	0.056023	1	33686	33686		85.642	26.963	1	34828000			26303	5383	18893	19034	25759	25759					0.008746097574885425
KLYDGFQYL	9	Unmodified	_KLYDGFQYL_					0	0	0		nc|ENSG00000143393|Q9UBF8-3|PI4KB;nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	MULTI-SECPEP	A375_MHC_IP_R2	2	574.1941528320312	2	573.795132	1145.57571	-0.13031	-7.4772E-05	0.13338	7.6535E-05	0.0030723	1.7629E-06	573.7950634060458	91.108	0.96403	91.842	91.514	92.478	0.73451					62	18	6	0	0	0	0.022401	1	34610	34610		99.755	47.487	1	36625000			26304	5383	18893	19034	25760	25760					0.008746097574885425
KLYECNKCW	9	Unmodified	_KLYECNKCW_					0	0	0		ZNF620|p.E312K|1|0.27|ENSG00000177842|chr3:40516528-40516528|G/A|missense_variant	ZNF620|p.E312K|1|0.27|ENSG00000177842|chr3:40516528-40516528|G/A|missense_variant	ZNF620|p.E312K|1|0.27|ENSG00000177842|chr3:40516528-40516528|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	396.2761535644531	3	396.184305	1185.53109	0.037498	1.4856E-05	-0.61138	-0.00024222	-0.57388	-0.00022736	396.5185509830843	20.409	0.50978	20.409	20.18	20.69	0					15	9	2	0	0	0	0.75466	1	5194	5194		4.897	0	1	966090			26305	30235	18894	19035	25761	25761					-0.05425860651871517
KLYEEINQV	9	Unmodified	_KLYEEINQV_					0	0	0		nc|ENSG00000119004|Q6UW02-2|CYP20A1;ENSG00000119004|ENST00000356079|CYP20A1	nc|ENSG00000119004|Q6UW02-2|CYP20A1	nc|ENSG00000119004|Q6UW02-2|CYP20A1	MULTI-SECPEP	A375_MHC_IP_R1	1	568.673583984375	2	568.303321	1134.59209	-0.30658	-0.00017423	-0.78934	-0.00044859	-1.0959	-0.00062282	568.3024127212454	50.253	0.71652	50.253	49.743	50.459	0					30	13	3	0	0	0	0.10362	1	17837	17837		72.968	25.219	1	4371500			26306	3569	18895	19036	25762	25762					0.030176909235478888
KLYEEINQV	9	Unmodified	_KLYEEINQV_					0	0	0		nc|ENSG00000119004|Q6UW02-2|CYP20A1;ENSG00000119004|ENST00000356079|CYP20A1	nc|ENSG00000119004|Q6UW02-2|CYP20A1	nc|ENSG00000119004|Q6UW02-2|CYP20A1	MULTI-SECPEP	A375_MHC_IP_R2	2	568.7028198242188	2	568.303321	1134.59209	-0.6534	-0.00037133	0.10433	5.9289E-05	-0.54907	-0.00031204	568.303301063463	49.498	0.55619	50.255	49.995	50.551	0.75737					17	10	2	0	0	0	0.061442	1	18611	18611		82.529	26.352	1	6451400			26307	3569	18895	19036	25763	25763					0.030176909235478888
KLYEEKTGNAW	11	Unmodified	_KLYEEKTGNAW_					0	0	0		ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	A375_MHC_IP_R1	1	447.2941589355469	3	446.894465	1337.66157	-0.21545	-9.6281E-05	-0.19769	-8.8346E-05	-0.41313	-0.00018463	446.8941893164584	33.014	0.65896	33.014	32.734	33.393	0					22	12	3	0	0	0	0.46316	1	10756	10756		30.354	21.111	1	6885200			26308	5434	18896	19037	25764	25764					0.006241498723284167
KLYEEKTGNAW	11	Unmodified	_KLYEEKTGNAW_					0	0	0		ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	A375_MHC_IP_R2	2	447.6284484863281	3	446.894465	1337.66157	-0.37296	-0.00016668	-0.27037	-0.00012083	-0.64334	-0.0002875	447.22878596433276	32.276	0.40715	33.013	32.806	33.213	0.73692					17	7	3	0	0	0	0.26992	1	11489	11489		35.996	17.656	1	7541800			26309	5434	18896	19037	25765	25765					0.006241498723284167
KLYEGPQLV	9	Unmodified	_KLYEGPQLV_					0	0	0		ENSG00000169231|ENST00000368378|THBS3;nc|ENSG00000169231|P49746-2|THBS3;ENST00000498500.1_1_1:155165634-155166210:-|nuORF	ENSG00000169231|ENST00000368378|THBS3	ENSG00000169231|ENST00000368378|THBS3	MULTI-SECPEP	A375_MHC_IP_R1	1	524.197021484375	2	523.797675	1045.5808	-0.47986	-0.00025135	-0.32489	-0.00017018	-0.80475	-0.00042153	523.797525308225	63.817	0.61222	63.817	63.529	64.141	0					26	11	3	0	0	0	0.070665	1	23066	23066		78.728	38.771	1	6359300			26310	7393	18897	19038	25766	25766					0.059829136200733046
KLYEKLLTA	9	Unmodified	_KLYEKLLTA_					0	0	0		ENSG00000108854|ENST00000262435|SMURF2;ENST00000582081.5_1_17:62541968-62590137:-|nuORF;ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1	ENSG00000108854|ENST00000262435|SMURF2;ENSG00000198742|ENST00000361368|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	MULTI-SECPEP	A375_MHC_IP_R1	1	540.2289428710938	2	539.828975	1077.6434	-0.40424	-0.00021822	-0.1666	-8.9933E-05	-0.57083	-0.00030815	539.8288143334487	49.723	0.45848	49.723	49.54	49.998	0					17	8	3	0	0	0	0.25548	1	17603	17603		42.835	8.6135	1	2317700			26311	2846;9313	18898	19039	25767	25767					0.10768059688280118
KLYEKLLTA	9	Unmodified	_KLYEKLLTA_					0	0	0		ENSG00000108854|ENST00000262435|SMURF2;ENST00000582081.5_1_17:62541968-62590137:-|nuORF;ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1	ENSG00000108854|ENST00000262435|SMURF2;ENSG00000198742|ENST00000361368|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	MULTI-SECPEP	A375_MHC_IP_R2	2	540.2284545898438	2	539.828975	1077.6434	-0.93891	-0.00050685	-0.026133	-1.4107E-05	-0.96504	-0.00052096	539.8290190786739	48.764	0.35784	49.522	49.332	49.69	0.75737					15	6	3	0	0	0	0.34544	1	18319	18319		36.395	8.7662	1	3252000			26312	2846;9313	18898	19039	25768	25768					0.10768059688280118
KLYEYPWDL	9	Unmodified	_KLYEYPWDL_					0	0	0			REV__ENSG00000108839|ENST00000251535|ALOX12	REV__ENSG00000108839|ENST00000251535|ALOX12	MULTI-SECPEP	A375_MHC_IP_R1	1	409.13995361328125	3	409.541252	1225.60193	0.04291	1.7573E-05	-1.1408	-0.0004672	-1.0979	-0.00044963	409.54085412314333	43.357	0.81565	43.357	43.043	43.859	0					20	15	2	0	0	0	0.67483	1	15107	15107		10.151	0	1	1182300	+		26313	17559	18899	19040	25769	25769					-0.0018512107103560993
KLYGGKLIV	9	Unmodified	_KLYGGKLIV_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-SECPEP	A375_MHC_IP_R1	1	496.22088623046875	2	495.820953	989.627353	0.039151	1.9412E-05	-0.18126	-8.9873E-05	-0.14211	-7.0461E-05	495.82083711517816	49.413	0.4576	49.413	49.184	49.642	0					12	8	2	0	0	0	0.35487	1	17487	17487		36.127	2.0246	1	2963800			26314	1236	18900	19041	25770	25770					0.13212398242035306
KLYGGKLIV	9	Unmodified	_KLYGGKLIV_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-SECPEP	A375_MHC_IP_R2	2	496.2207336425781	2	495.820953	989.627353	-0.4317	-0.00021405	0.097763	4.8473E-05	-0.33394	-0.00016557	495.8209253798036	48.348	0.35289	49.105	48.929	49.282	0.75737					10	6	2	0	0	0	0.11436	1	18178	18178		58.679	7.8238	1	3334400			26315	1236	18900	19041	25771	25771					0.13212398242035306
KLYGKPIRV	9	Unmodified	_KLYGKPIRV_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	MULTI-SECPEP	A375_MHC_IP_R1	1	358.96563720703125	3	358.565843	1072.6757	-0.041878	-1.5016E-05	-0.52971	-0.00018994	-0.57159	-0.00020495	358.56565187439685	25.588	1.1165	25.588	25.357	26.474	0					64	21	5	0	0	0	0.01147	1	7466	7466		100.09	65.159	1	544500000			26316	5375	18901	19042	25772	25772					0.14226891881935444
KLYGKPIRV	9	Unmodified	_KLYGKPIRV_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	MULTI-SECPEP	A375_MHC_IP_R1	1	537.744873046875	2	537.345126	1072.6757	-0.80977	-0.00043513	-0.070282	-3.7766E-05	-0.88005	-0.00047289	537.3450412116158	25.588	0.55863	25.588	25.408	25.966	0					30	10	4	0	0	0	0.0575	1	7492	7492		96.285	47.939	1	36639000			26317	5375	18901	19042	25773	25773					0.14226891881935444
KLYGKPIRV	9	Unmodified	_KLYGKPIRV_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	MULTI-MSMS	A375_MHC_IP_R2	2	537.744140625	2	537.345126	1072.6757	-1.2653	-0.00067993	-0.15176	-8.1548E-05	-1.4171	-0.00076147	537.3449961918665	24.796	0.5582	25.439	25.263	25.822	0.64368					24	10	4	0	0	0	0.0098409	1	8203	8203		115.69	67.346	1	42681000			26318	5375	18901	19042	25774	25774					0.14226891881935444
KLYGKPIRV	9	Unmodified	_KLYGKPIRV_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	MULTI-SECPEP	A375_MHC_IP_R2	2	358.9657287597656	3	358.565843	1072.6757	-0.60048	-0.00021531	-0.46673	-0.00016735	-1.0672	-0.00038266	358.5656720653944	24.796	1.1183	25.439	25.212	26.33	0.64368					57	21	4	0	0	0	0.011191	1	8182	8182		110.55	75.621	1	622190000			26319	5375	18901	19042	25775	25775					0.14226891881935444
KLYGRPIKI	9	Unmodified	_KLYGRPIKI_					0	0	0		ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7;ENST00000538134.1_1_11:114271453-114272668:+|nuORF	ENST00000265882.5_1_2:80389676-80390174:-|nuORF	ENST00000265882.5_1_2:80389676-80390174:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	363.6375732421875	3	363.237726	1086.69135	0.20042	7.2799E-05	-0.25269	-9.1788E-05	-0.052277	-1.8989E-05	363.2376148730885	31.856	0.4079	31.856	31.616	32.024	0					17	7	3	0	0	0	0.14858	1	10241	10241		41.956	0	1	5496600			26320	1629	18902	19043	25776	25776					0.15147178398979122
KLYGRPIKI	9	Unmodified	_KLYGRPIKI_					0	0	0		ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7;ENST00000538134.1_1_11:114271453-114272668:+|nuORF	ENST00000265882.5_1_2:80389676-80390174:-|nuORF	ENST00000265882.5_1_2:80389676-80390174:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	363.6376647949219	3	363.237726	1086.69135	-0.11258	-4.0894E-05	-0.12849	-4.6673E-05	-0.24107	-8.7567E-05	363.2376514112629	30.824	0.45362	31.542	31.367	31.821	0.71857					19	8	3	0	0	0	0.018261	1	10872	10872		85.642	9.8807	1	5944600			26321	1629	18902	19043	25777	25777					0.15147178398979122
KLYGRPIKI	9	Unmodified	_KLYGRPIKI_					0	0	0		ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7;ENST00000538134.1_1_11:114271453-114272668:+|nuORF	ENST00000265882.5_1_2:80389676-80390174:-|nuORF	ENST00000265882.5_1_2:80389676-80390174:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	363.237726	1086.69135	0.20042	7.2799E-05	-0.25269	-9.1788E-05	-0.052277	-1.8989E-05	363.2376148730885	31.856	0.4079	31.856	31.616	32.024	0	0.15698	-5.1139E-05	NaN	85.642	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5496600			26322	1629	18902	19043							0.15147178398979122
KLYHPCPIW	9	Unmodified	_KLYHPCPIW_					0	0	0			REV__ENST00000423538.6_1_1:156180242-156180479:+|nuORF	REV__ENST00000423538.6_1_1:156180242-156180479:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	578.1696166992188	2	578.802237	1155.58992	-0.11066	-6.4052E-05	2.3775	0.0013761	2.2668	0.001312	578.8035904343402	55.996	0.55908	55.996	55.584	56.143	0					13	10	2	0	0	0	0.75466	1	20090	20090		7.9102	3.9658	1	1210700	+		26323	24615	18903	19044	25778	25778					0.018349837047708206
KLYKDPRL	8	Unmodified	_KLYKDPRL_					0	0	0		nc|ENSG00000159625|Q8IY82-2|DRC7;ENSG00000159625|ENST00000360716|DRC7;DRC7|p.G867R|1|0.22|ENSG00000159625|chr16:57731232-57731232|G/A|missense_variant;DRC7|p.G867E|1|0.22|ENSG00000159625|chr16:57731233-57731233|G/A|missense_variant	nc|ENSG00000159625|Q8IY82-2|DRC7	nc|ENSG00000159625|Q8IY82-2|DRC7	MULTI-MSMS	A375_MHC_IP_R2	2	517.5586547851562	2	516.813659	1031.61277	-0.76508	-0.00039541	-0.016677	-8.619E-06	-0.78176	-0.00040402	516.8136249814534	77.345	1.1218	78.088	77.807	78.929	0.74293					61	21	5	0	0	0	0.76654	1	29270	29270		15.847	0	1	91761000			26324	6380	18904	19045	25779	25779					0.09822326093899392
KLYKLALEE	9	Unmodified	_KLYKLALEE_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.Y6402Ffs*2|1|0.34|ENSG00000183091|chr2:151492486-151492487|AT/-|frameshift_variant;NEB|p.V4554Gfs*42|1|0.12|ENSG00000183091|chr2:151562738-151562739|-/CC|frameshift_variant;NEB|p.L4555Rfs*43|1|0.12|ENSG00000183091|chr2:151562736-151562737|-/CCTGCTCT|frameshift_variant	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	A375_MHC_IP_R2	2	369.9450988769531	3	369.55338	1105.63831	0.28217	0.00010428	-0.8262	-0.00030532	-0.54402	-0.00020104	369.5530071510384	70.611	0.40443	71.345	71.149	71.553	0.73421					13	7	2	0	0	0	0.50892	1	26766	26766		19.362	4.1135	1	4000000			26325	8464	18905	19046	25780	25780					0.08971755825655237
KLYLYPAPF	9	Unmodified	_KLYLYPAPF_					0	0	0			REV__GPBAR1|p.E169K|1|0.33|ENSG00000179921|chr2:218263229-218263229|G/A|missense_variant	REV__GPBAR1|p.E169K|1|0.33|ENSG00000179921|chr2:218263229-218263229|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	371.6109924316406	3	371.211066	1110.61137	0.38209	0.00014183	-0.87575	-0.00032509	-0.49367	-0.00018325	371.21073313066023	30.753	0.40305	31.472	31.266	31.669	0.71857					15	7	3	0	0	0	0.79683	1	10875	10875		1.1933	0	1	3164600	+		26326	26693	18906	19047	25781	25781					0.06048692005106204
KLYPGKSLL	9	Unmodified	_KLYPGKSLL_					0	0	0		nc|ENSG00000160746|Q9NW15-5|ANO10;ENSG00000160746|ENST00000292246|ANO10;nc|ENSG00000160746|Q9NW15-2|ANO10;nc|ENSG00000160746|Q9NW15-3|ANO10	nc|ENSG00000160746|Q9NW15-5|ANO10	nc|ENSG00000160746|Q9NW15-5|ANO10	MULTI-MSMS	A375_MHC_IP_R2	2	509.7145080566406	2	509.81841	1017.62227	-0.59179	-0.00030171	-0.56325	-0.00028716	-1.155	-0.00058887	509.81851263599503	46.625	0.35637	47.391	47.21	47.567	0.76519					11	6	2	0	0	0	0.57432	1	17455	17455		16.149	3.9084	1	2375700			26327	6438	18907	19048	25782	25782					0.11416094379421793
KLYPQLSSV	9	Unmodified	_KLYPQLSSV_					0	0	0		nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF	nc|ENSG00000137145|Q5VZ89-5|DENND4C	nc|ENSG00000137145|Q5VZ89-5|DENND4C	MULTI-SECPEP	A375_MHC_IP_R1	1	518.1972045898438	2	517.797675	1033.5808	-0.56863	-0.00029444	-0.14966	-7.7496E-05	-0.7183	-0.00037193	517.7975910146167	59.046	0.40869	59.046	58.836	59.245	0					19	7	4	0	0	0	0.10362	1	21219	21219		63.961	27.833	1	6538400			26328	4862	18908	19049	25783	25783					0.06534913620089355
KLYPQLSSV	9	Unmodified	_KLYPQLSSV_					0	0	0		nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF	nc|ENSG00000137145|Q5VZ89-5|DENND4C	nc|ENSG00000137145|Q5VZ89-5|DENND4C	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1970825195312	2	517.797675	1033.5808	-1.0084	-0.00052212	-0.18581	-9.6212E-05	-1.1942	-0.00061833	517.7976774400204	58.163	0.45593	58.912	58.679	59.135	0.74894					18	8	3	0	0	0	0.061442	1	21989	21989		72.968	36.841	1	4965800			26329	4862	18908	19049	25784	25784					0.06534913620089355
KLYTDPPQSV	10	Unmodified	_KLYTDPPQSV_					0	0	0			REV__ENST00000436471.2_1_17:20385129-20386047:-|nuORF	REV__ENST00000436471.2_1_17:20385129-20386047:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	574.703125	2	574.303321	1146.59209	-0.38437	-0.00022074	-1.309	-0.00075175	-1.6933	-0.00097249	574.3033097181781	39.555	0.96513	39.555	39.238	40.203	0					35	18	3	0	0	0	0.21617	2	13562	13562;13612		47.594	7.3552	1	8946600	+		26330	16804	18909	19050	25785;25786	25785					0.024656909235773128
KLYTDPPQSV	10	Unmodified	_KLYTDPPQSV_					0	0	0			REV__ENST00000436471.2_1_17:20385129-20386047:-|nuORF	REV__ENST00000436471.2_1_17:20385129-20386047:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	574.703125	2	574.303321	1146.59209	-0.38437	-0.00022074	-1.309	-0.00075175	-1.6933	-0.00097249	574.3033097181781	39.555	0.96513	39.555	39.238	40.203	0					35	18	3	0	0	0	0.37302	1	13562	13562		47.594	7.3552	1	8946600	+		26331	16804	18909	19050	25787	25787					0.024656909235773128
KLYTDPPQSV	10	Unmodified	_KLYTDPPQSV_					0	0	0			REV__ENST00000436471.2_1_17:20385129-20386047:-|nuORF	REV__ENST00000436471.2_1_17:20385129-20386047:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	574.7026977539062	2	574.303321	1146.59209	-0.51723	-0.00029705	-1.5726	-0.00090312	-2.0898	-0.0012002	574.303018571308	38.741	1.222	39.516	39.047	40.269	0.77451					42	23	3	0	0	0	0.25355	1	14270	14270		43.772	1.6778	1	8327100	+		26332	16804	18909	19050	25788	25788					0.024656909235773128
KLYTGLREV	9	Unmodified	_KLYTGLREV_					0	0	0		ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-2|CUL3	ENSG00000036257|ENST00000264414|CUL3	ENSG00000036257|ENST00000264414|CUL3	MULTI-MSMS	A375_MHC_IP_R1	1	360.61328125	3	360.213358	1077.61824	-0.25114	-9.0464E-05	-0.10772	-3.8803E-05	-0.35886	-0.00012927	360.2132438153589	38.293	0.30512	38.293	38.118	38.423	0					10	5	2	0	0	0	0.43945	1	13009	13009		22.775	7.0363	1	5081200			26333	1136	18910	19051	25789	25789					0.0825400488570267
KLYTGLREV	9	Unmodified	_KLYTGLREV_					0	0	0		ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-2|CUL3	ENSG00000036257|ENST00000264414|CUL3	ENSG00000036257|ENST00000264414|CUL3	MULTI-SECPEP	A375_MHC_IP_R1	1	540.2158813476562	2	539.816399	1077.61824	-1.0209	-0.00055111	0.44985	0.00024284	-0.57106	-0.00030827	539.816500877906	38.293	0.45901	38.293	38.118	38.577	0					17	8	3	0	0	0	0.3697	1	12981	12981		51.415	13.24	1	12020000			26334	1136	18910	19051	25790	25790					0.0825400488570267
KLYTGLREV	9	Unmodified	_KLYTGLREV_					0	0	0		ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-2|CUL3	ENSG00000036257|ENST00000264414|CUL3	ENSG00000036257|ENST00000264414|CUL3	MULTI-MSMS	A375_MHC_IP_R2	2	360.6133117675781	3	360.213358	1077.61824	-0.66828	-0.00024072	0.039615	1.427E-05	-0.62866	-0.00022645	360.2132748728631	37.324	0.40955	38.095	37.917	38.327	0.7709					10	7	2	0	0	0	0.43945	1	13682	13682		22.775	7.0363	1	4024400			26335	1136	18910	19051	25791	25791					0.0825400488570267
KLYTGLREV	9	Unmodified	_KLYTGLREV_					0	0	0		ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-2|CUL3	ENSG00000036257|ENST00000264414|CUL3	ENSG00000036257|ENST00000264414|CUL3	MULTI-SECPEP	A375_MHC_IP_R2	2	540.2157592773438	2	539.816399	1077.61824	-1.3231	-0.00071421	0.13065	7.0529E-05	-1.1924	-0.00064368	539.8163763251019	37.324	0.35786	38.095	37.917	38.275	0.7709					18	6	4	0	0	0	0.26374	1	13652	13652		51.63	11.672	1	9668700			26336	1136	18910	19051	25792	25792					0.0825400488570267
KLYVLYPAPD	10	Unmodified	_KLYVLYPAPD_					0	0	0			REV__ENSG00000165076|ENST00000350549|PRSS37	REV__ENSG00000165076|ENST00000350549|PRSS37	MULTI-MSMS	A375_MHC_IP_R2	2	393.92779541015625	3	393.55338	1177.63831	-0.5068	-0.00019945	1.9536	0.00076885	1.4468	0.0005694	393.5542131931901	20.782	0.76008	21.393	21.21	21.97	0.61029					35	14	3	0	0	0	0.7086	1	6607	6607		8.4443	0.49891	1	7766700	+		26337	20545	18911	19052	25793	25793					0.056597558256498814
KLYYSYSYAN	10	Unmodified	_KLYYSYSYAN_					0	0	0			REV__ENSG00000196090|ENST00000373187|PTPRT	REV__ENSG00000196090|ENST00000373187|PTPRT	MULTI-SECPEP	A375_MHC_IP_R1	1	636.699951171875	2	636.300778	1270.587	-0.52506	-0.00033409	-0.26744	-0.00017018	-0.7925	-0.00050427	636.3006035604388	47.796	0.80864	47.796	47.517	48.325	0					28	15	3	0	0	0	0.92514	1	16822	16822		8.1555	5.8728	1	3666000	+		26338	22156	18912	19053	25794	25794					-0.03746612939039551
KMADIEYRL	9	Unmodified	_KMADIEYRL_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-MSMS	A375_MHC_IP_R1	1	380.60260009765625	3	380.202353	1137.58523	0.50748	0.00019294	0.19359	7.3603E-05	0.70107	0.00026655	380.20232265585906	51.665	0.45497	51.665	51.424	51.879	0					17	8	3	0	0	0	0.58268	1	18359	18359		15.739	2.1238	1	2532100			26339	2993	18913	19054	25795	25795					0.021940547713484193
KMADIEYRL	9	Unmodified	_KMADIEYRL_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-SECPEP	A375_MHC_IP_R1	1	570.199951171875	2	569.799891	1137.58523	-0.1431	-8.154E-05	-0.85908	-0.0004895	-1.0022	-0.00057104	569.79910380095	51.662	0.50604	51.662	51.424	51.93	0					22	9	4	0	0	0	0.04566	1	18339	18339		70.929	38.891	1	3737300			26340	2993	18913	19054	25796	25796					0.021940547713484193
KMADIEYRL	9	Unmodified	_KMADIEYRL_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-SECPEP	A375_MHC_IP_R2	2	380.6025695800781	3	380.202353	1137.58523	-0.065609	-2.4945E-05	0.23672	9.0003E-05	0.17112	6.5058E-05	380.20234626130645	50.784	0.45327	51.538	51.361	51.815	0.75406					15	8	2	0	0	0	0.34746	1	19133	19133		35.612	6.1751	1	2975700			26341	2993	18913	19054	25797	25797					0.021940547713484193
KMADIEYRL	9	Unmodified	_KMADIEYRL_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-SECPEP	A375_MHC_IP_R2	2	570.1987915039062	2	569.799891	1137.58523	-0.41556	-0.00023679	-1.1135	-0.00063446	-1.529	-0.00087124	569.7988705867779	50.811	0.50439	51.565	51.361	51.866	0.75406					17	9	3	0	0	0	0.1952	1	19122	19122		61.09	20.851	1	3197400			26342	2993	18913	19054	25798	25798					0.021940547713484193
KMADIEYRL	9	Oxidation (M)	_KM(Oxidation (M))ADIEYRL_		KM(1)ADIEYRL		KM(57)ADIEYRL	0	0	1		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-SECPEP	A375_MHC_IP_R2	2	578.1966552734375	2	577.797349	1153.58014	-0.49212	-0.00028435	0.95173	0.00054991	0.45961	0.00026556	577.797951292344	37.53	0.56203	38.301	38.07	38.632	0.7709					15	10	2	0	0	0	0.23313	1	13753	13753		57.249	15.294	1	6505700			26343	2993	18913	19055	25799	25799		141			0.00949750908716851
KMAELVHFL	9	Unmodified	_KMAELVHFL_					0	0	0		ENSG00000213401|ENST00000393869|MAGEA12;chrX:152733859-152736087|323|82.7|0.12|9.43|+|ENST00000357916|MAGEA12,MAGEA12	ENSG00000213401|ENST00000393869|MAGEA12	ENSG00000213401|ENST00000393869|MAGEA12	MULTI-SECPEP	A375_MHC_IP_R1	1	544.7019653320312	2	544.30207	1086.58959	-0.69149	-0.00037638	0.85322	0.00046441	0.16173	8.803E-05	544.3021037225509	80.84	0.71171	80.84	80.541	81.253	0					24	13	2	0	0	0	0.022401	1	29534	29534		99.755	52.007	1	7279100			26344	523	18914	19056	25800	25800					0.04975563984908149
KMAELVHFL	9	Unmodified	_KMAELVHFL_					0	0	0		ENSG00000213401|ENST00000393869|MAGEA12;chrX:152733859-152736087|323|82.7|0.12|9.43|+|ENST00000357916|MAGEA12,MAGEA12	ENSG00000213401|ENST00000393869|MAGEA12	ENSG00000213401|ENST00000393869|MAGEA12	MSMS	A375_MHC_IP_R2	2	544.3462524414062	2	544.30207	1086.58959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.727	1	80.472	79.972	80.972	0.74474								0	0	0	0.026343	1	30260	30260		79.596	24.823	1				26345	523	18914	19056	25801	25801					0.04975563984908149
KMAELVHFL	9	Unmodified	_KMAELVHFL_					0	0	0		ENSG00000213401|ENST00000393869|MAGEA12;chrX:152733859-152736087|323|82.7|0.12|9.43|+|ENST00000357916|MAGEA12,MAGEA12	ENSG00000213401|ENST00000393869|MAGEA12	ENSG00000213401|ENST00000393869|MAGEA12	MULTI-SECPEP	A375_MHC_IP_R2	2	363.6034851074219	3	363.203805	1086.58959	-0.026191	-9.5126E-06	-0.42672	-0.00015499	-0.45291	-0.0001645	363.20366504262074	79.772	0.45837	80.517	80.199	80.657	0.74474					12	8	2	0	0	0	0.56537	1	30317	30317		16.566	0	1	1706600			26346	523	18914	19056	25802	25802					0.04975563984908149
KMAELVHFL	9	Oxidation (M)	_KM(Oxidation (M))AELVHFL_		KM(1)AELVHFL		KM(40)AELVHFL	0	0	1		ENSG00000213401|ENST00000393869|MAGEA12;chrX:152733859-152736087|323|82.7|0.12|9.43|+|ENST00000357916|MAGEA12,MAGEA12	ENSG00000213401|ENST00000393869|MAGEA12	ENSG00000213401|ENST00000393869|MAGEA12	MULTI-MSMS	A375_MHC_IP_R2	2	368.9354248046875	3	368.535444	1102.5845	0.15127	5.5748E-05	-0.12461	-4.5923E-05	0.026659	9.8247E-06	368.53536012263766	62.565	0.65792	63.308	62.976	63.634	0.74263					19	12	2	0	0	0	0.16945	1	23683	23683		40.239	17.581	1	5777500			26347	523	18914	19057	25803	25803		1			0.03731260122299318
KMAEMLVEL	9	Unmodified	_KMAEMLVEL_					0	0	0		ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1	ENSG00000179010|ENST00000382581|MRFAP1	ENSG00000179010|ENST00000382581|MRFAP1	MULTI-MSMS	A375_MHC_IP_R1	1	532.6790771484375	2	532.279946	1062.54534	-0.6429	-0.00034221	-0.33495	-0.00017829	-0.97786	-0.00052049	532.2799410649095	91.655	0.606	91.655	91.35	91.956	0					30	11	4	0	0	0	0.02114	1	33667	33667		82.529	23.85	1	7492600			26348	8194	18915	19058	25804	25804					0.016567917764405138
KMAEMLVEL	9	Unmodified	_KMAEMLVEL_					0	0	0		ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1	ENSG00000179010|ENST00000382581|MRFAP1	ENSG00000179010|ENST00000382581|MRFAP1	MULTI-MSMS	A375_MHC_IP_R2	2	532.6316528320312	2	532.279946	1062.54534	-0.59182	-0.00031501	-0.52602	-0.00027999	-1.1178	-0.000595	532.2797753906087	90.7	0.60778	91.435	91.109	91.717	0.7345					25	11	3	0	0	0	0.02114	1	34559	34559		82.529	17.294	1	7538800			26349	8194	18915	19058	25805	25805					0.016567917764405138
KMAERNMKLF	10	Unmodified	_KMAERNMKLF_					0	0	0		ENSG00000166707|ENST00000650639|ZCCHC18	ENSG00000166707|ENST00000650639|ZCCHC18	ENSG00000166707|ENST00000650639|ZCCHC18	MSMS	A375_MHC_IP_R2	2	634.2703247070312	2	634.336118	1266.65768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.51	1	134.64	134.14	135.14	0.13901								0	0	0	0.15541	1	52911	52911		3.2813	0.28607	1				26350	7104	18916	19059	25806	25806					0.035020655732523664
KMAERNVMWFV	11	Unmodified	_KMAERNVMWFV_					0	0	0		ENST00000488118.6_1_10:111637546-111648351:-|nuORF;nc|ENSG00000108039|Q9NQW7-2|XPNPEP1;nc|ENSG00000108039|Q9NQW7|XPNPEP1;nc|ENSG00000108039|Q9NQW7-4|XPNPEP1;ENSG00000108039|ENST00000502935|XPNPEP1	ENST00000488118.6_1_10:111637546-111648351:-|nuORF	ENST00000488118.6_1_10:111637546-111648351:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	471.010498046875	3	470.905542	1409.6948	-0.54636	-0.00025728	0.074936	3.5288E-05	-0.47143	-0.000222	470.905852822593	132.27	1.0172	132.46	132.05	133.07	0.18953					58	19	4	0	0	0	0.99838	1	52099	52099		2.084	0	1	5344500			26351	2780	18917	19060	25807	25807					0.006337371190056729
KMDDLNLHY	9	Oxidation (M)	_KM(Oxidation (M))DDLNLHY_		KM(1)DDLNLHY		KM(120)DDLNLHY	0	0	1		ENST00000550564.1_1_12:53468877-53473168:-|nuORF;SPRYD3|p.S215Ifs*22|1|0.21|ENSG00000167778|chr12:53073335-53073335|C/-|frameshift_variant;ENSG00000167778|ENST00000301463|SPRYD3	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	583.1709594726562	2	582.771331	1163.52811	-0.063235	-3.6851E-05	-0.050659	-2.9522E-05	-0.11389	-6.6374E-05	582.7711726051426	37.376	0.61115	37.376	36.996	37.607	0					23	11	3	0	0	0	0.0099638	1	12550	12550		121.35	81.389	1	11666000			26352	7223	18918	19061	25808	25808		367			-0.04711412505048429
KMDDLNLHY	9	Oxidation (M)	_KM(Oxidation (M))DDLNLHY_		KM(1)DDLNLHY		KM(44)DDLNLHY	0	0	1		ENST00000550564.1_1_12:53468877-53473168:-|nuORF;SPRYD3|p.S215Ifs*22|1|0.21|ENSG00000167778|chr12:53073335-53073335|C/-|frameshift_variant;ENSG00000167778|ENST00000301463|SPRYD3	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	583.1708374023438	2	582.771331	1163.52811	0.02975	1.7337E-05	0.14639	8.5314E-05	0.17614	0.00010265	582.771342922444	38.897	1.1685	38.897	38.475	39.643	0					36	22	2	0	0	0	0.13728	1	13322	13322		43.982	18.583	1	2978400			26353	7223	18918	19061	25809	25809		367			-0.04711412505048429
KMDDLNLHY	9	Oxidation (M)	_KM(Oxidation (M))DDLNLHY_		KM(1)DDLNLHY		KM(53)DDLNLHY	0	0	1		ENST00000550564.1_1_12:53468877-53473168:-|nuORF;SPRYD3|p.S215Ifs*22|1|0.21|ENSG00000167778|chr12:53073335-53073335|C/-|frameshift_variant;ENSG00000167778|ENST00000301463|SPRYD3	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	389.24969482421875	3	388.849979	1163.52811	-0.50638	-0.00019691	0.37497	0.00014581	-0.13141	-5.1099E-05	388.8501127285757	36.545	0.61005	37.316	37.005	37.615	0.7709					28	11	3	0	0	0	0.084766	1	13320	13320		53.404	40.531	1	7083400			26354	7223	18918	19061	25810	25810		367			-0.04711412505048429
KMDDLNLHY	9	Oxidation (M)	_KM(Oxidation (M))DDLNLHY_		KM(1)DDLNLHY		KM(100)DDLNLHY	0	0	1		ENST00000550564.1_1_12:53468877-53473168:-|nuORF;SPRYD3|p.S215Ifs*22|1|0.21|ENSG00000167778|chr12:53073335-53073335|C/-|frameshift_variant;ENSG00000167778|ENST00000301463|SPRYD3	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	583.1708374023438	2	582.771331	1163.52811	-0.76407	-0.00044528	0.12696	7.3988E-05	-0.63711	-0.00037129	582.7714427585502	36.585	0.60943	37.356	37.056	37.665	0.7709					28	11	4	0	0	0	0.0090873	1	13324	13324		100.71	60.751	1	8481300			26355	7223	18918	19061	25811	25811		367			-0.04711412505048429
KMDDLNLHY	9	Unmodified	_KMDDLNLHY_					0	0	0		ENST00000550564.1_1_12:53468877-53473168:-|nuORF;SPRYD3|p.S215Ifs*22|1|0.21|ENSG00000167778|chr12:53073335-53073335|C/-|frameshift_variant;ENSG00000167778|ENST00000301463|SPRYD3	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	575.1736450195312	2	574.773874	1147.53319	0.2623	0.00015077	-0.52096	-0.00029943	-0.25865	-0.00014867	574.7735210901338	49.34	0.55699	49.34	48.983	49.54	0					27	10	3	0	0	0	0.011256	1	17409	17409		121.35	58.773	1	6030700			26356	7223	18918	19062	25812	25812					-0.03467108642416861
KMDDLNLHY	9	Unmodified	_KMDDLNLHY_					0	0	0		ENST00000550564.1_1_12:53468877-53473168:-|nuORF;SPRYD3|p.S215Ifs*22|1|0.21|ENSG00000167778|chr12:53073335-53073335|C/-|frameshift_variant;ENSG00000167778|ENST00000301463|SPRYD3	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	575.173828125	2	574.773874	1147.53319	-0.22157	-0.00012735	-0.49178	-0.00028266	-0.71335	-0.00041001	574.7735831275687	48.523	0.60832	49.28	48.98	49.588	0.75737					30	11	3	0	0	0	0.002121	1	18196	18196		155.95	84.031	1	7993600			26357	7223	18918	19062	25813	25813					-0.03467108642416861
KMDDLNLHY	9	Unmodified	_KMDDLNLHY_					0	0	0		ENST00000550564.1_1_12:53468877-53473168:-|nuORF;SPRYD3|p.S215Ifs*22|1|0.21|ENSG00000167778|chr12:53073335-53073335|C/-|frameshift_variant;ENSG00000167778|ENST00000301463|SPRYD3	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	383.9184875488281	3	383.518341	1147.53319	-0.12046	-4.6199E-05	0.2906	0.00011145	0.17014	6.5252E-05	383.51837116616247	48.514	0.7607	49.271	48.929	49.69	0.75737					25	14	3	0	0	0	0.46045	1	18211	18211		27.223	2.2323	1	1951200			26358	7223	18918	19062	25814	25814					-0.03467108642416861
KMDEVLYSI	9	Unmodified	_KMDEVLYSI_					0	0	0		ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	MULTI-MSMS	A375_MHC_IP_R1	1	549.680419921875	2	549.281	1096.54745	-0.65541	-0.00036	-0.26674	-0.00014651	-0.92214	-0.00050652	549.2807344914663	80.927	0.50893	80.927	80.642	81.151	0					17	9	2	0	0	0	0.032333	1	29568	29568		72.968	12.894	1	4815900			26359	5273	18919	19063	25815	25815					0.0030354378586707753
KMDEVLYSI	9	Unmodified	_KMDEVLYSI_					0	0	0		ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	MULTI-MSMS	A375_MHC_IP_R2	2	549.6798095703125	2	549.281	1096.54745	-0.76591	-0.0004207	-0.48825	-0.00026818	-1.2542	-0.00068888	549.2807280033002	80.033	0.96323	80.778	80.453	81.416	0.74474					24	18	2	0	0	0	0.02114	2	30389	30389;30459		82.529	21.172	1	5320100			26360	5273	18919	19063	25816;25817	25816					0.0030354378586707753
KMDLDNNFY	9	Oxidation (M)	_KM(Oxidation (M))DLDNNFY_		KM(1)DLDNNFY		KM(48)DLDNNFY	0	0	1		ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	MULTI-MSMS	A375_MHC_IP_R1	1	588.65576171875	2	588.255514	1174.49647	0.021416	1.2598E-05	-0.13102	-7.7076E-05	-0.10961	-6.4478E-05	588.2554896117017	49.632	1.2716	49.632	48.983	50.254	0					40	24	2	0	0	0	0.11715	1	17544	17544		47.594	23.574	1	1852900			26361	8075	18920	19064	25818	25818		396			-0.08379405258961015
KMDLDNNFY	9	Unmodified	_KMDLDNNFY_					0	0	0		ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	MULTI-MSMS	A375_MHC_IP_R1	1	580.657958984375	2	580.258056	1158.50156	-0.19532	-0.00011334	-0.19883	-0.00011537	-0.39415	-0.00022871	580.2579222246526	63.81	0.66282	63.81	63.529	64.191	0					38	12	4	0	0	0	0.029064	1	23043	23043		75.761	15.687	1	13350000			26362	8075	18920	19065	25819	25819					-0.07135101396352184
KMDLDNNFY	9	Unmodified	_KMDLDNNFY_					0	0	0		ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	MULTI-SECPEP	A375_MHC_IP_R2	2	580.6581420898438	2	580.258056	1158.50156	-0.24679	-0.0001432	-0.2874	-0.00016676	-0.53419	-0.00030997	580.257961636783	63.071	0.71002	63.813	63.534	64.244	0.74263					33	13	3	0	0	0	0.056023	1	23897	23897		85.642	24.284	1	11981000			26363	8075	18920	19065	25820	25820					-0.07135101396352184
KMDPVAYRV	9	Unmodified	_KMDPVAYRV_					0	0	0		nc|ENSG00000172053|P47897-2|QARS1;ENSG00000172053|ENST00000306125|QARS1;ENST00000478561.5_1_3:49137386-49138086:-|nuORF	nc|ENSG00000172053|P47897-2|QARS1	nc|ENSG00000172053|P47897-2|QARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	540.1888427734375	2	539.789327	1077.5641	-0.76773	-0.00041441	-0.29224	-0.00015775	-1.06	-0.00057216	539.7891942630395	36.33	0.45732	36.33	36.084	36.541	0					17	8	3	0	0	0	0.13208	1	12150	12150		66.457	46.003	1	4583400			26364	7675	18921	19066	25821	25821					0.028420894624787252
KMDPVAYRV	9	Unmodified	_KMDPVAYRV_					0	0	0		nc|ENSG00000172053|P47897-2|QARS1;ENSG00000172053|ENST00000306125|QARS1;ENST00000478561.5_1_3:49137386-49138086:-|nuORF	nc|ENSG00000172053|P47897-2|QARS1	nc|ENSG00000172053|P47897-2|QARS1	MULTI-MSMS	A375_MHC_IP_R2	2	539.7110595703125	2	539.789327	1077.5641	-1.0887	-0.00058766	-0.28265	-0.00015257	-1.3713	-0.00074023	539.7891177712453	35.414	0.40356	36.178	35.98	36.384	0.76338					20	7	3	0	0	0	0.46465	1	12880	12880		21.537	7.6309	1	10018000			26365	7675	18921	19066	25822	25822					0.028420894624787252
KMDPVAYRV	9	Oxidation (M)	_KM(Oxidation (M))DPVAYRV_		KM(1)DPVAYRV		KM(51)DPVAYRV	0	0	1		nc|ENSG00000172053|P47897-2|QARS1;ENSG00000172053|ENST00000306125|QARS1;ENST00000478561.5_1_3:49137386-49138086:-|nuORF	nc|ENSG00000172053|P47897-2|QARS1	nc|ENSG00000172053|P47897-2|QARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	548.1864013671875	2	547.786784	1093.55902	-0.84353	-0.00046207	-0.17612	-9.6474E-05	-1.0196	-0.00055855	547.7866335198697	26.467	0.85619	26.467	26.271	27.128	0					29	16	2	0	0	0	0.30133	1	7896	7896		51.415	40.591	1	6455500			26366	7675	18921	19067	25823	25823		384			0.015977855998698942
KMEFMWQFIS	10	Unmodified	_KMEFMWQFIS_					0	0	0		UBQLNL|p.N187K|1|0.31|ENSG00000175518|chr11:5515881-5515881|G/T|missense_variant	UBQLNL|p.N187K|1|0.31|ENSG00000175518|chr11:5515881-5515881|G/T|missense_variant	UBQLNL|p.N187K|1|0.31|ENSG00000175518|chr11:5515881-5515881|G/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	674.6102905273438	2	673.817227	1345.6199	-0.82808	-0.00055797	-0.35658	-0.00024027	-1.1847	-0.00079824	673.8170531339771	86.502	0.70959	86.502	86.121	86.831	0					21	13	2	0	0	0	0.93961	1	31817	31817		6.2058	0.47393	1	2940400			26367	30109	18922	19068	25824	25824					-0.03908445412207584
KMFQVHQV	8	Oxidation (M)	_KM(Oxidation (M))FQVHQV_		KM(1)FQVHQV		KM(82)FQVHQV	0	0	1		nc|ENSG00000134882|Q8NBM4-4|UBAC2;ENST00000480738.1_1_13:99967048-100037586:+|nuORF;nc|ENSG00000134882|Q8NBM4-3|UBAC2;nc|ENSG00000134882|Q8NBM4-2|UBAC2;ENSG00000134882|ENST00000403766|UBAC2	nc|ENSG00000134882|Q8NBM4-4|UBAC2	nc|ENSG00000134882|Q8NBM4-4|UBAC2	MULTI-SECPEP	A375_MHC_IP_R1	1	517.16796875	2	516.768394	1031.52224	-0.77641	-0.00040122	-0.029243	-1.5112E-05	-0.80565	-0.00041633	516.7681698329686	23.986	0.60988	23.986	23.737	24.347	0					17	11	2	0	0	0	0.19796	1	6674	6674		81.613	56.214	1	6509000			26368	4619	18923	19069	25825	25825		239			0.007735337739632087
KMFQVHQV	8	Oxidation (M)	_KM(Oxidation (M))FQVHQV_		KM(1)FQVHQV		KM(55)FQVHQV	0	0	1		nc|ENSG00000134882|Q8NBM4-4|UBAC2;ENST00000480738.1_1_13:99967048-100037586:+|nuORF;nc|ENSG00000134882|Q8NBM4-3|UBAC2;nc|ENSG00000134882|Q8NBM4-2|UBAC2;ENSG00000134882|ENST00000403766|UBAC2	nc|ENSG00000134882|Q8NBM4-4|UBAC2	nc|ENSG00000134882|Q8NBM4-4|UBAC2	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1676635742188	2	516.768394	1031.52224	-1.0365	-0.00053563	3.1296	0.0016173	2.0931	0.0010817	516.7681620076795	23.518	0.70838	24.148	23.777	24.485	0.63014					33	13	4	0	0	0	0.46048	1	7576	7576		54.774	31.625	1	4314700			26369	4619	18923	19069	25826	25826		239			0.007735337739632087
KMFVGGLSW	9	Unmodified	_KMFVGGLSW_					0	0	0		nc|ENSG00000197451|Q99729-3|HNRNPAB;nc|ENSG00000197451|Q99729-4|HNRNPAB;nc|ENSG00000197451|Q99729|HNRNPAB;ENSG00000197451|ENST00000358344|HNRNPAB	nc|ENSG00000197451|Q99729-3|HNRNPAB	nc|ENSG00000197451|Q99729-3|HNRNPAB	MULTI-SECPEP	A375_MHC_IP_R1	1	513.2052612304688	2	512.767863	1023.52117	-0.44634	-0.00022887	-0.34448	-0.00017664	-0.79083	-0.00040551	512.767779776521	98.328	0.55817	98.328	98.101	98.659	0					28	10	4	0	0	0	0.31606	1	36170	36170		39.95	39.95	1	3409200			26370	9162	18924	19070	25827	25827					0.010353194050708225
KMFVGGLSW	9	Unmodified	_KMFVGGLSW_					0	0	0		nc|ENSG00000197451|Q99729-3|HNRNPAB;nc|ENSG00000197451|Q99729-4|HNRNPAB;nc|ENSG00000197451|Q99729|HNRNPAB;ENSG00000197451|ENST00000358344|HNRNPAB	nc|ENSG00000197451|Q99729-3|HNRNPAB	nc|ENSG00000197451|Q99729-3|HNRNPAB	MULTI-SECPEP	A375_MHC_IP_R2	2	513.4546508789062	2	512.767863	1023.52117	-0.90794	-0.00046556	0.29201	0.00014974	-0.61593	-0.00031583	512.7680859242529	97.495	0.55963	98.25	97.923	98.483	0.75586					22	10	3	0	0	0	0.31606	1	36953	36953		39.95	21.815	1	3757500			26371	9162	18924	19070	25828	25828					0.010353194050708225
KMGFFRRRYKE	11	Unmodified	_KMGFFRRRYKE_					0	0	0		ENSG00000144668|ENST00000264741|ITGA9	ENSG00000144668|ENST00000264741|ITGA9	ENSG00000144668|ENST00000264741|ITGA9	MULTI-MSMS	A375_MHC_IP_R2	2	759.8117065429688	2	759.411537	1516.80852	-0.69755	-0.00052973	0.72328	0.00054927	0.025736	1.9544E-05	759.4120479183547	43.778	0.40296	44.547	44.329	44.732	0.76909					22	7	4	0	0	0	0.73135	1	16318	16318		7.609	1.8771	1	9702500			26372	5504	18925	19071	25829	25829					0.07078968276300657
KMGFFRRRYKE	11	Unmodified	_KMGFFRRRYKE_					0	0	0		ENSG00000144668|ENST00000264741|ITGA9	ENSG00000144668|ENST00000264741|ITGA9	ENSG00000144668|ENST00000264741|ITGA9	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	759.411537	1516.80852	-0.69755	-0.00052973	0.72328	0.00054927	0.025736	1.9544E-05	759.4120479183547	43.778	0.40296	44.547	44.329	44.732	0.76909	-0.026872	8.593E-05	NaN	7.609	22	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9702500			26373	5504	18925	19071							0.07078968276300657
KMGLIFEV	8	Unmodified	_KMGLIFEV_					0	0	0		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-SECPEP	A375_MHC_IP_R1	1	469.16436767578125	2	468.764789	935.515025	-0.26414	-0.00012382	0.033421	1.5667E-05	-0.23072	-0.00010816	468.76477823997664	101.42	1.9224	101.42	101.04	102.96	0					73	37	4	0	0	0	0.30564	1	37221	37221		64.236	23.788	1	26652000			26374	1840	18926	19072	25830	25830					0.0446880117353885
KMGLIFEV	8	Unmodified	_KMGLIFEV_					0	0	0		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-SECPEP	A375_MHC_IP_R2	2	469.1645812988281	2	468.764789	935.515025	-0.42647	-0.00019992	0.30917	0.00014493	-0.1173	-5.4987E-05	468.76491609729527	100.45	1.1287	101.21	100.83	101.96	0.76278					58	21	4	0	0	0	0.36486	1	38016	38016		71.134	22.788	1	26860000			26375	1840	18926	19072	25831	25831					0.0446880117353885
KMGLIFEV	8	Oxidation (M)	_KM(Oxidation (M))GLIFEV_		KM(1)GLIFEV		KM(57)GLIFEV	0	0	1		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-SECPEP	A375_MHC_IP_R1	1	477.21246337890625	2	476.762246	951.50994	-0.45337	-0.00021615	-0.17228	-8.2136E-05	-0.62565	-0.00029829	476.7621795640809	82.999	1.3159	82.999	82.622	83.937	0					72	25	4	0	0	0	0.55372	1	30421	30421		57.471	15.377	1	52178000			26376	1840	18926	19073	25832	25832		64			0.03224497310930019
KMGLIFEV	8	Oxidation (M)	_KM(Oxidation (M))GLIFEV_		KM(1)GLIFEV		KM(42)GLIFEV	0	0	1		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-SECPEP	A375_MHC_IP_R1	1	477.1620788574219	2	476.762246	951.50994	-0.45273	-0.00021585	1.3796	0.00065775	0.92688	0.0004419	476.76227653179905	101.46	1.3668	101.46	100.69	102.05	0					52	26	3	0	0	0	0.77651	1	37245	37245		42.095	9.9776	1	5871000			26377	1840	18926	19073	25833	25833		64			0.03224497310930019
KMGLIFEV	8	Oxidation (M)	_KM(Oxidation (M))GLIFEV_		KM(1)GLIFEV		KM(48)GLIFEV	0	0	1		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-SECPEP	A375_MHC_IP_R2	2	477.21270751953125	2	476.762246	951.50994	-0.58285	-0.00027788	0.2369	0.00011295	-0.34595	-0.00016493	476.76231006119684	82.066	1.5696	82.809	82.381	83.951	0.74293					58	30	3	0	0	0	0.55372	1	31194	31194		48.346	14.243	1	44992000			26378	1840	18926	19073	25834	25834		64			0.03224497310930019
KMIEDLQNEL	10	Unmodified	_KMIEDLQNEL_					0	0	0		ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	MULTI-MSMS	A375_MHC_IP_R1	1	617.2128295898438	2	616.813196	1231.61184	-0.21807	-0.00013451	0.05445	3.3585E-05	-0.16362	-0.00010093	617.3148624249	71.207	0.46236	71.207	70.902	71.364	0					17	8	3	0	0	0	0.010963	1	25852	25852		110.55	47.98	1	3325600			26379	9360	18927	19074	25835	25835					0.005296988720374429
KMIEDLQNEL	10	Unmodified	_KMIEDLQNEL_					0	0	0		ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	MULTI-MSMS	A375_MHC_IP_R2	2	617.2123413085938	2	616.813196	1231.61184	-0.60523	-0.00037331	0.85256	0.00052587	0.24733	0.00015255	616.8135226003187	70.491	0.60899	71.225	70.844	71.453	0.73421					17	11	2	0	0	0	0.011373	1	26713	26713		121.53	57.574	1	5406800			26380	9360	18927	19074	25836	25836					0.005296988720374429
KMIEDLQNEL	10	Oxidation (M)	_KM(Oxidation (M))IEDLQNEL_		KM(1)IEDLQNEL		KM(85)IEDLQNEL	0	0	1		ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	MULTI-SECPEP	A375_MHC_IP_R1	1	625.2106323242188	2	624.810653	1247.60675	-0.52493	-0.00032798	-0.052926	-3.3069E-05	-0.57785	-0.00036105	624.8105750158312	54.847	0.65974	54.847	54.67	55.33	0					17	12	2	0	0	0	0.06997	1	19609	19609		84.522	36.774	1	3448900			26381	9360	18927	19075	25837	25837		433			-0.007146049905941254
KMILEPRMV	9	Unmodified	_KMILEPRMV_					0	0	0			REV__ENST00000417255.1_1_6:42695019-42695259:+|nuORF	REV__ENST00000417255.1_1_6:42695019-42695259:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	372.3013610839844	3	372.880445	1115.61951	0.37952	0.00014152	-1.5587	-0.00058122	-1.1792	-0.0004397	372.87962289131366	32.605	0.61105	33.342	33.162	33.773	0.73692					15	11	2	0	0	0	0.75519	1	11764	11764		14.405	7.3037	1	2992200	+		26382	24541	18928	19076	25838	25838					0.06632179658618043
KMKKARKIL	9	Unmodified	_KMKKARKIL_					0	0	0		nc|ENSG00000156983|P55201-4|BRPF1;nc|ENSG00000156983|P55201-3|BRPF1;nc|ENSG00000156983|P55201|BRPF1;ENSG00000156983|ENST00000383829|BRPF1	nc|ENSG00000156983|P55201-4|BRPF1	nc|ENSG00000156983|P55201-4|BRPF1	MSMS	A375_MHC_IP_R1	1	372.60784912109375	3	372.586361	1114.73725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.502	1	78.502	78.002	79.002	0								0	0	0	0.15486	1	28647	28647		1.1933	0.32897	1				26383	6221	18929	19077	25839	25839					0.18447500309594034
KMKLLWRQL	9	Unmodified	_KMKLLWRQL_					0	0	0			REV__ENST00000314888.9_1_9:35704808-35705576:-|nuORF	REV__ENST00000314888.9_1_9:35704808-35705576:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	406.6430358886719	3	405.917999	1214.73217	-0.38676	-0.00015699	1.383	0.00056139	0.99625	0.0004044	405.91872393726874	59.409	0.45324	60.156	59.896	60.349	0.74714					12	8	2	0	0	0	0.72761	1	22431	22431		4.5289	1.6856	1	776610	+		26384	23528	18930	19078	25840	25840					0.13339196446963797
KMKVKKKK	8	Unmodified	_KMKVKKKK_					0	0	0		ENST00000513820.1_1_5:118462594-118462864:-|nuORF	ENST00000513820.1_1_5:118462594-118462864:-|nuORF	ENST00000513820.1_1_5:118462594-118462864:-|nuORF	MSMS	A375_MHC_IP_R1	1	509.353271484375	2	509.351897	1016.68924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.566	1	29.566	29.066	30.066	0								0	0	0	0.16876	1	9283	9283		0	0	1				26385	12936	18931	19079	25841	25841					0.18156426389532498
KMLDESFQW	9	Oxidation (M)	_KM(Oxidation (M))LDESFQW_		KM(1)LDESFQW		KM(70)LDESFQW	0	0	1		ENST00000461777.1_1_X:14891644-14911041:+|nuORF;ENSG00000130150|ENST00000380492|MOSPD2	ENST00000461777.1_1_X:14891644-14911041:+|nuORF	ENST00000461777.1_1_X:14891644-14911041:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	600.6727294921875	2	600.273706	1198.53286	-0.38125	-0.00022886	1.3989	0.00083974	1.0177	0.00061088	600.2748920603148	74.326	0.9136	74.326	73.943	74.857	0					29	17	3	0	0	0	0.035419	1	27063	27063		70.332	36.23	1	2648500			26386	4223	18932	19080	25842	25842		216			-0.058465283622808784
KMLDESFQW	9	Oxidation (M)	_KM(Oxidation (M))LDESFQW_		KM(1)LDESFQW		KM(65)LDESFQW	0	0	1		ENST00000461777.1_1_X:14891644-14911041:+|nuORF;ENSG00000130150|ENST00000380492|MOSPD2	ENST00000461777.1_1_X:14891644-14911041:+|nuORF	ENST00000461777.1_1_X:14891644-14911041:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	600.674560546875	2	600.273706	1198.53286	-0.47704	-0.00028635	1.9871	0.0011928	1.5101	0.00090647	600.2753862510958	73.636	1.0685	74.371	73.938	75.007	0.73541					26	20	2	0	0	0	0.13064	1	27936	27936		65.235	31.133	1	3232400			26387	4223	18932	19080	25843	25843		216			-0.058465283622808784
KMLDESFQW	9	Unmodified	_KMLDESFQW_					0	0	0		ENST00000461777.1_1_X:14891644-14911041:+|nuORF;ENSG00000130150|ENST00000380492|MOSPD2	ENST00000461777.1_1_X:14891644-14911041:+|nuORF	ENST00000461777.1_1_X:14891644-14911041:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	592.6760864257812	2	592.276249	1182.53795	-0.46573	-0.00027584	0.46031	0.00027263	-0.0054135	-3.2063E-06	592.2763082218673	90.093	0.5559	90.093	89.78	90.336	0					17	10	2	0	0	0	0.06083	1	33097	33097		60.074	30.992	1	2494400			26388	4223	18932	19081	25844	25844					-0.0460222449964931
KMLDESFQW	9	Unmodified	_KMLDESFQW_					0	0	0		ENST00000461777.1_1_X:14891644-14911041:+|nuORF;ENSG00000130150|ENST00000380492|MOSPD2	ENST00000461777.1_1_X:14891644-14911041:+|nuORF	ENST00000461777.1_1_X:14891644-14911041:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	592.67529296875	2	592.276249	1182.53795	-0.48133	-0.00028508	0.70797	0.00041931	0.22664	0.00013424	592.2765865683253	89.348	0.71091	90.08	89.886	90.597	0.7318					19	13	2	0	0	0	0.094655	1	34004	34004		51.63	22.548	1	2306700			26389	4223	18932	19081	25845	25845					-0.0460222449964931
KMLEELRLE	9	Unmodified	_KMLEELRLE_					0	0	0		nc|ENSG00000111879|Q8NB25-2|FAM184A;FAM184A|p.Q613Hfs*10|1|0.23|ENSG00000111879|chr6:119003599-119003599|T/-|frameshift_variant;nc|ENSG00000111879|Q8NB25-3|FAM184A;ENSG00000111879|ENST00000338891|FAM184A;nc|ENSG00000111879|Q8NB25-4|FAM184A	nc|ENSG00000111879|Q8NB25-2|FAM184A	nc|ENSG00000111879|Q8NB25-2|FAM184A	MULTI-MSMS	A375_MHC_IP_R1	1	387.9496765136719	3	387.549641	1159.62709	0.16585	6.4275E-05	-0.33797	-0.00013098	-0.17213	-6.6707E-05	387.5495566692092	58.935	0.35597	58.935	58.736	59.092	0					15	6	3	0	0	0	0.26911	1	21191	21191		32.898	1.262	1	2082800			26390	14545	18933	19082	25846	25846					0.053666104598505626
KMLGGVFKI	9	Unmodified	_KMLGGVFKI_					0	0	0		ENST00000506175.1_1_4:69188417-69195784:-|nuORF;nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1	ENST00000506175.1_1_4:69188417-69195784:-|nuORF	ENST00000506175.1_1_4:69188417-69195784:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	497.201416015625	2	496.801706	991.588859	-0.38131	-0.00018944	0.73726	0.00036627	0.35595	0.00017684	496.80152441362924	68.736	0.45415	69.471	69.121	69.575	0.73511					21	8	4	0	0	0	0.24548	1	26063	26063		43.858	20.71	1	2442800			26391	1792	18934	19083	25847	25847					0.0927276933587109
KMLLNLHKKSW	11	Unmodified	_KMLLNLHKKSW_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MSMS	A375_MHC_IP_R2	2	699.4290161132812	2	699.407932	1396.80131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.65	1	138.73	138.23	139.23	0.083969								0	0	0	0.16337	1	54360	54360		1.1933	0	1				26392	3285	18935	19084	25848	25848					0.11878235675862925
KMLMNALVLY	10	Unmodified	_KMLMNALVLY_					0	0	0			REV__ENSG00000166200|ENST00000388901|COPS2	REV__ENSG00000166200|ENST00000388901|COPS2	MULTI-MSMS	A375_MHC_IP_R1	1	399.62432861328125	3	399.224101	1194.65047	-0.094411	-3.7691E-05	0.7142	0.00028513	0.61979	0.00024744	399.2243620545677	56.338	0.55783	56.338	56.092	56.65	0					20	10	3	0	0	0	0.70741	1	20198	20198		8.9762	3.9287	1	3271600	+		26393	20661	18936	19085	25849	25849					0.06093332972841381
KMLMNALVLY	10	Unmodified	_KMLMNALVLY_					0	0	0			REV__ENSG00000166200|ENST00000388901|COPS2	REV__ENSG00000166200|ENST00000388901|COPS2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	399.224101	1194.65047	-0.14777	-5.8995E-05	0.43121	0.00017215	0.28344	0.00011315	399.22421177093366	55.403	0.55809	56.154	55.881	56.439	0.75075	-0.092095	-0.00019107	NaN	8.9762	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4066300	+		26394	20661	18936	19085							0.06093332972841381
KMNEKLYTV	9	Unmodified	_KMNEKLYTV_					0	0	0		nc|ENSG00000083642|Q9NTI5-2|PDS5B;ENSG00000083642|ENST00000315596|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-SECPEP	A375_MHC_IP_R2	2	563.7020874023438	2	563.302267	1124.58998	-0.54572	-0.0003074	1.7334	0.00097645	1.1877	0.00066904	563.302239660442	31.454	0.46087	32.173	31.821	32.282	0.71857					20	8	4	0	0	0	0.41731	1	11142	11142		42.312	14.684	1	3807700			26395	1783	18937	19086	25850	25850					0.03266938914111961
KMNPQSAFF	9	Unmodified	_KMNPQSAFF_					0	0	0		nc|ENSG00000116171|P22307-4|SCP2;nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;nc|ENSG00000116171|P22307-6|SCP2;nc|ENSG00000116171|P22307-2|SCP2	nc|ENSG00000116171|P22307-4|SCP2	nc|ENSG00000116171|P22307-4|SCP2	MULTI-SECPEP	A375_MHC_IP_R1	1	535.6596069335938	2	535.260402	1068.50625	-0.60991	-0.00032646	0.12582	6.7349E-05	-0.48409	-0.00025911	535.260585208149	62.97	0.76815	62.97	62.609	63.377	0					25	14	3	0	0	0	0.20645	1	22746	22746		56.177	27.095	1	4384600			26396	3379	18938	19087	25851	25851					-0.02526172462944487
KMNPQSAFF	9	Unmodified	_KMNPQSAFF_					0	0	0		nc|ENSG00000116171|P22307-4|SCP2;nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;nc|ENSG00000116171|P22307-6|SCP2;nc|ENSG00000116171|P22307-2|SCP2	nc|ENSG00000116171|P22307-4|SCP2	nc|ENSG00000116171|P22307-4|SCP2	MULTI-MSMS	A375_MHC_IP_R2	2	535.6600952148438	2	535.260402	1068.50625	-1.032	-0.00055238	0.13739	7.3541E-05	-0.8946	-0.00047884	535.2605725640302	62.103	0.50799	62.845	62.571	63.079	0.74263					19	9	3	0	0	0	0.030038	1	23525	23525		74.929	26.583	1	4679000			26397	3379	18938	19087	25852	25852					-0.02526172462944487
KMNPQSAFF	9	Oxidation (M)	_KM(Oxidation (M))NPQSAFF_		KM(1)NPQSAFF		KM(72)NPQSAFF	0	0	1		nc|ENSG00000116171|P22307-4|SCP2;nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;nc|ENSG00000116171|P22307-6|SCP2;nc|ENSG00000116171|P22307-2|SCP2	nc|ENSG00000116171|P22307-4|SCP2	nc|ENSG00000116171|P22307-4|SCP2	MULTI-MSMS	A375_MHC_IP_R2	2	543.6574096679688	2	543.257859	1084.50117	-0.79857	-0.00043383	0.48957	0.00026596	-0.309	-0.00016787	543.2579019418868	48.472	0.65762	49.23	48.879	49.536	0.75736					27	12	3	0	0	0	0.033557	1	18161	18161		71.922	21.067	1	6165500			26398	3379	18938	19088	25853	25853		165			-0.037704763255760554
KMNQFYNTFRM	11	Unmodified	_KMNQFYNTFRM_					0	0	0		ENST00000244230.6_1_2:71360149-71360302:+|nuORF	ENST00000244230.6_1_2:71360149-71360302:+|nuORF	ENST00000244230.6_1_2:71360149-71360302:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	740.7471313476562	2	740.347214	1478.67988	-0.43933	-0.00032526	-0.39445	-0.00029203	-0.83378	-0.00061729	740.3469067235028	70.969	0.8176	70.969	70.648	71.465	0					38	15	4	0	0	0	0.60848	1	25744	25744		22.658	6.509	1	14137000			26399	10176	18939	19089	25854	25854					-0.04031754748984895
KMPDDVWLV	9	Oxidation (M)	_KM(Oxidation (M))PDDVWLV_		KM(1)PDDVWLV		KM(50)PDDVWLV	0	0	1		nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	MULTI-MSMS	A375_MHC_IP_R1	1	560.1810302734375	2	559.781167	1117.54778	-0.59117	-0.00033092	-0.042902	-2.4016E-05	-0.63407	-0.00035494	559.781105416045	83.871	1.2669	83.871	83.125	84.391	0					67	24	4	0	0	0	0.10411	1	30578	30578		49.933	9.9757	1	18788000			26400	2935	18940	19090	25855	25855		140			-0.006290364942742599
KMPDDVWLV	9	Oxidation (M)	_KM(Oxidation (M))PDDVWLV_		KM(1)PDDVWLV		KM(59)PDDVWLV	0	0	1		nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	MULTI-MSMS	A375_MHC_IP_R1	1	559.8211669921875	2	559.781167	1117.54778	-0.59566	-0.00033344	0.082437	4.6147E-05	-0.51322	-0.00028729	559.7812561794009	86.766	1.8799	86.766	86.325	88.205	0					66	36	2	0	0	0	0.064406	1	31895	31895		58.679	29.597	1	4451100			26401	2935	18940	19090	25856	25856		140			-0.006290364942742599
KMPDDVWLV	9	Oxidation (M)	_KM(Oxidation (M))PDDVWLV_		KM(1)PDDVWLV		KM(42)PDDVWLV	0	0	1		nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	MULTI-SECPEP	A375_MHC_IP_R2	2	560.180908203125	2	559.781167	1117.54778	-0.65737	-0.00036798	-0.30745	-0.00017211	-0.96482	-0.00054009	559.7810395702028	83.038	1.0113	83.778	83.191	84.203	0.73962					52	19	3	0	0	0	0.38578	1	31411	31411		41.84	9.5341	1	16676000			26402	2935	18940	19090	25857	25857		140			-0.006290364942742599
KMPDDVWLV	9	Unmodified	_KMPDDVWLV_					0	0	0		nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	MULTI-MSMS	A375_MHC_IP_R1	1	551.6981811523438	2	551.78371	1101.55287	-0.51182	-0.00028241	-0.043868	-2.4206E-05	-0.55568	-0.00030662	551.783733608269	100.76	1.0644	100.76	100.33	101.39	0					61	20	4	0	0	0	0.015701	1	37105	37105		88.954	46.859	1	19080000			26403	2935	18940	19091	25858	25858					0.006152673683345711
KMPDDVWLV	9	Unmodified	_KMPDDVWLV_					0	0	0		nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	MULTI-SECPEP	A375_MHC_IP_R2	2	551.3944702148438	2	551.78371	1101.55287	-0.53696	-0.00029629	-0.098064	-5.411E-05	-0.63503	-0.0003504	551.7837753081217	99.873	1.1202	100.64	100.12	101.24	0.76278					73	21	5	0	0	0	0.05021	1	37953	37953		88.954	48.997	1	18179000			26404	2935	18940	19091	25859	25859					0.006152673683345711
KMPDVELFV	9	Unmodified	_KMPDVELFV_					0	0	0		ENST00000460338.5_1_13:103443606-103451020:-|nuORF;ENSG00000134901|ENST00000376004|POGLUT2	ENST00000460338.5_1_13:103443606-103451020:-|nuORF	ENST00000460338.5_1_13:103443606-103451020:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	538.6803588867188	2	539.286085	1076.55762	-0.61976	-0.00033423	0.98202	0.00052959	0.36226	0.00019536	539.2866002432937	104.45	0.86246	104.45	104.13	104.99	0					33	16	3	0	0	0	0.31606	1	38366	38366		47.749	13.646	1	9106300			26405	4623	18941	19092	25860	25860					0.022401515111141634
KMPDVELFV	9	Unmodified	_KMPDVELFV_					0	0	0		ENST00000460338.5_1_13:103443606-103451020:-|nuORF;ENSG00000134901|ENST00000376004|POGLUT2	ENST00000460338.5_1_13:103443606-103451020:-|nuORF	ENST00000460338.5_1_13:103443606-103451020:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	539.166259765625	2	539.286085	1076.55762	-0.82652	-0.00044573	1.0969	0.00059152	0.27033	0.00014579	539.2865298764891	103.51	0.96587	104.28	103.79	104.75	0.76428					38	18	3	0	0	0	0.27742	1	39242	39242		43.772	15.599	1	7401900			26406	4623	18941	19092	25861	25861					0.022401515111141634
KMPEINAKV	9	Unmodified	_KMPEINAKV_					0	0	0		ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1;ENST00000569569.5_1_16:56966069-56970730:+|nuORF;ENST00000568676.5_1_16:56966069-56969519:+|nuORF;ENST00000570273.5_1_16:56966069-56976120:+|nuORF	ENSG00000051108|ENST00000439977|HERPUD1	ENSG00000051108|ENST00000439977|HERPUD1	MULTI-MSMS	A375_MHC_IP_R1	1	515.1959228515625	2	515.291702	1028.56885	-0.59399	-0.00030608	0.29955	0.00015436	-0.29444	-0.00015172	515.2916987391812	34.412	0.75813	34.412	34.001	34.759	0					30	14	4	0	0	0	0.57432	1	11269	11269		16.149	2.2431	1	22317000			26407	1233	18942	19093	25862	25862					0.05570973605267682
KMPEINAKV	9	Unmodified	_KMPEINAKV_					0	0	0		ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1;ENST00000569569.5_1_16:56966069-56970730:+|nuORF;ENST00000568676.5_1_16:56966069-56969519:+|nuORF;ENST00000570273.5_1_16:56966069-56976120:+|nuORF	ENSG00000051108|ENST00000439977|HERPUD1	ENSG00000051108|ENST00000439977|HERPUD1	MULTI-SECPEP	A375_MHC_IP_R2	2	515.1957397460938	2	515.291702	1028.56885	-1.2235	-0.00063044	0.36585	0.00018852	-0.85761	-0.00044192	515.2918565635425	33.515	0.81074	34.267	33.992	34.803	0.75225					22	14	2	0	0	0	0.030244	1	11990	11990		96.936	70.667	1	29669000			26408	1233	18942	19093	25863	25863					0.05570973605267682
KMPEINAKV	9	Oxidation (M)	_KM(Oxidation (M))PEINAKV_		KM(1)PEINAKV		KM(74)PEINAKV	0	0	1		ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1;ENST00000569569.5_1_16:56966069-56970730:+|nuORF;ENST00000568676.5_1_16:56966069-56969519:+|nuORF;ENST00000570273.5_1_16:56966069-56976120:+|nuORF	ENSG00000051108|ENST00000439977|HERPUD1	ENSG00000051108|ENST00000439977|HERPUD1	MULTI-SECPEP	A375_MHC_IP_R1	1	523.6889038085938	2	523.289159	1044.56377	-0.79703	-0.00041708	-0.010967	-5.7389E-06	-0.808	-0.00042282	523.2890718852962	23.559	0.45938	23.559	23.278	23.737	0					15	8	3	0	0	0	0.062502	1	6503	6503		74.2	38.155	1	9790800			26409	1233	18942	19094	25864	25864		25			0.043266697426361134
KMPEINAKV	9	Oxidation (M)	_KM(Oxidation (M))PEINAKV_		KM(1)PEINAKV		KM(77)PEINAKV	0	0	1		ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1;ENST00000569569.5_1_16:56966069-56970730:+|nuORF;ENST00000568676.5_1_16:56966069-56969519:+|nuORF;ENST00000570273.5_1_16:56966069-56976120:+|nuORF	ENSG00000051108|ENST00000439977|HERPUD1	ENSG00000051108|ENST00000439977|HERPUD1	MULTI-SECPEP	A375_MHC_IP_R2	2	523.6878662109375	2	523.289159	1044.56377	-0.88001	-0.0004605	-0.13051	-6.8293E-05	-1.0105	-0.00052879	523.2889829912322	23.172	0.35595	23.802	23.623	23.979	0.63014					11	6	2	0	0	0	0.0575	1	7411	7411		76.825	28.479	1	9435100			26410	1233	18942	19094	25865	25865		25			0.043266697426361134
KMPRLIAKV	9	Unmodified	_KMPRLIAKV_					0	0	0		ENSG00000100664|ENST00000216554|EIF5;ENST00000559249.5_1_14:103802197-103802459:+|nuORF	ENSG00000100664|ENST00000216554|EIF5	ENSG00000100664|ENST00000216554|EIF5	MULTI-MSMS	A375_MHC_IP_R1	1	352.9634704589844	3	352.563445	1054.66851	-0.33744	-0.00011897	0.16949	5.9756E-05	-0.16795	-5.9211E-05	352.56350822397104	36.839	0.70906	36.839	36.439	37.148	0					22	13	2	0	0	0	0.39434	1	12302	12302		24.991	10.586	1	2739500			26411	2210	18943	19095	25866	25866					0.14335836009854575
KMQETLVGL	9	Unmodified	_KMQETLVGL_					0	0	0		ENST00000469871.1_1_7:2249647-2255919:-|nuORF;nc|ENSG00000002822|Q9Y6D9-3|MAD1L1;nc|ENSG00000002822|Q9Y6D9-4|MAD1L1;ENSG00000002822|ENST00000265854|MAD1L1	ENST00000469871.1_1_7:2249647-2255919:-|nuORF	ENST00000469871.1_1_7:2249647-2255919:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	510.1836242675781	2	509.78371	1017.55287	-0.49236	-0.000251	0.82333	0.00041972	0.33097	0.00016872	509.78400052387104	64.783	0.45902	64.783	64.495	64.954	0					17	8	3	0	0	0	0.35487	1	23450	23450		43.858	1.7637	1	2164500			26412	855	18944	19096	25867	25867					0.044792673683673456
KMQKMLRV	8	Unmodified	_KMQKMLRV_					0	0	0			REV__nc|ENSG00000139116|Q7Z4S6-6|KIF21A	REV__nc|ENSG00000139116|Q7Z4S6-6|KIF21A	MULTI-MSMS	A375_MHC_IP_R2	2	518.9627685546875	2	517.30409	1032.59363	-0.60989	-0.0003155	1.9305	0.00099864	1.3206	0.00068314	517.3054964930247	86.869	1.1133	87.602	87.255	88.368	0.73301					59	21	5	0	0	0	0.77717	1	33102	33102		5.2307	0.47466	1	3498000	+		26413	19133	18945	19097	25868	25868					0.07863330206987484
KMRAPIIVK	9	Unmodified	_KMRAPIIVK_					0	0	0			REV__ENST00000514302.5_1_4:8609022-8621341:+|nuORF	REV__ENST00000514302.5_1_4:8609022-8621341:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	352.9632873535156	3	352.563445	1054.66851	-0.4462	-0.00015731	0.11178	3.9411E-05	-0.33442	-0.0001179	352.56344560792513	35.595	0.7092	36.358	35.929	36.638	0.76338					23	13	2	0	0	0	0.094655	1	12864	12864		51.63	0	1	7285700	+		26414	17585	18946	19098	25869	25869					0.14335836009854575
KMRAPIIVK	9	Unmodified	_KMRAPIIVK_					0	0	0			REV__ENST00000514302.5_1_4:8609022-8621341:+|nuORF	REV__ENST00000514302.5_1_4:8609022-8621341:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	351.9449157714844	3	352.563445	1054.66851	-0.4462	-0.00015731	0.11178	3.9411E-05	-0.33442	-0.0001179	352.56344560792513	35.595	0.7092	36.358	35.929	36.638	0.76338					23	13	2	0	0	0	0.69381	1	12968	12968		15.248	0	1	7285700	+		26415	17585	18946	19098	25870	25870					0.14335836009854575
KMRRFYHIEYF	11	Unmodified	_KMRRFYHIEYF_					0	0	0		ENSG00000114656|ENST00000645291|CFAP92;nc|ENSG00000114656|Q9ULG3|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	MSMS	A375_MHC_IP_R2	2	530.6520385742188	3	530.606373	1588.79729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.471	1	61.216	60.716	61.716	0.74503								0	0	0	0.16334	1	22898	22898		1.3296	0.82369	1				26416	3236	18947	19099	25871	25871					0.02644146182183249
KMSELQTYV	9	Unmodified	_KMSELQTYV_					0	0	0		ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-SECPEP	A375_MHC_IP_R2	2	550.1781005859375	2	549.778625	1097.5427	-1.05	-0.00057725	-0.2091	-0.00011496	-1.2591	-0.00069221	549.7786554276912	54.292	0.40532	55.043	54.763	55.169	0.75075					12	7	2	0	0	0	0.13208	1	20494	20494		66.457	28.305	1	3981100			26417	3509	18948	19100	25872	25872					-0.002173403568804133
KMSLTNVRL	9	Unmodified	_KMSLTNVRL_					0	0	0			REV__ENSG00000120137|ENST00000239231|PANK3	REV__ENSG00000120137|ENST00000239231|PANK3	MULTI-MSMS	A375_MHC_IP_R1	1	531.7093505859375	2	531.310426	1060.6063	-0.40724	-0.00021637	-0.040546	-2.1542E-05	-0.44778	-0.00023791	531.3102250010757	127.96	0.70667	127.96	127.87	128.58	0					16	13	2	0	0	0	0.67332	1	49133	49133		9.3831	0	1	17964000	+		26418	18114	18949	19101	25873	25873					0.0784206487087431
KMTDLRQI	8	Unmodified	_KMTDLRQI_					0	0	0		ENSG00000132170|ENST00000651735|PPARG;nc|ENSG00000132170|P37231-2|PPARG;nc|ENSG00000132170|P37231|PPARG	ENSG00000132170|ENST00000651735|PPARG	ENSG00000132170|ENST00000651735|PPARG	MULTI-MSMS	A375_MHC_IP_R2	2	502.64453125	2	502.781502	1003.54845	-1.2663	-0.00063667	1.0684	0.00053718	-0.19789	-9.9494E-05	502.77969173875675	28.683	0.45085	29.382	29.183	29.634	0.69872					25	8	5	0	0	0	0.72008	1	9936	9936		28.487	1.6032	1	58390000			26419	4378	18950	19102	25874	25874					0.04681802945447089
KMTSFELSQ	9	Unmodified	_KMTSFELSQ_					0	0	0			REV__nc|ENSG00000147081|Q5JQC9-2|AKAP4	REV__nc|ENSG00000147081|Q5JQC9-2|AKAP4	MSMS	A375_MHC_IP_R2	2	535.68212890625	2	535.762975	1069.5114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.553	1	66.291	65.791	66.791	0.73811								0	0	0	0.15486	1	24852	24852		9.3831	1.2276	1		+		26420	19565	18951	19103	25875	25875					-0.020579133909905067
KMVEDLISV	9	Unmodified	_KMVEDLISV_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	A375_MHC_IP_R1	1	517.6842651367188	2	517.283543	1032.55253	-0.59234	-0.00030641	1.9864	0.0010275	1.3941	0.00072114	517.2847948482205	80.05	0.56215	80.05	79.676	80.238	0					17	10	2	0	0	0	0.050868	1	29229	29229		63.961	1.3878	1	6397100			26421	3579	18952	19104	25876	25876					0.03755847648494637
KMVELVHFL	9	Unmodified	_KMVELVHFL_					0	0	0		ENSG00000268606|ENST00000684311|MAGEA2;ENSG00000183305|ENST00000682532|MAGEA2B;chrX:152753623-152753788|269|13.78|0.02|9.76|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152753391-152753788|277|27.37|0.03|9.77|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152753391-152753542|267|20.52|0.02|9.74|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152752513-152753788|298|28.03|0.06|8.93|-|ENST00000620710|MAGEA2,MAGEA2;chrX:152752513-152753313|286|46.87|0.07|9.47|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751822-152752394|297|32.94|0.06|9.21|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751574-152753788|270|15.7|0.02|9.72|-|ENST00000611674|MAGEA2,MAGEA2;chrX:152751574-152752394|306|57.07|0.12|8.92|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152751574-152751725|302|47.9|0.07|9.45|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751428-152751509|319|92.49|0.18|9.0|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152714682-152716896|294|25.49|0.02|10.05|+|ENST00000370293|MAGEA2B,MAGEA2B	ENSG00000268606|ENST00000684311|MAGEA2	ENSG00000268606|ENST00000684311|MAGEA2	MULTI-SECPEP	A375_MHC_IP_R1	1	557.839599609375	2	558.31772	1114.62089	-0.4279	-0.0002389	0.33049	0.00018452	-0.097408	-5.4385E-05	558.3180227681412	88.465	0.61109	88.465	88.103	88.714	0					18	11	2	0	0	0	0.60917	1	32426	32426		25.399	9.5521	1	3084600			26422	522	18953	19105	25877	25877					0.06816137019018242
KMVELVHFL	9	Unmodified	_KMVELVHFL_					0	0	0		ENSG00000268606|ENST00000684311|MAGEA2;ENSG00000183305|ENST00000682532|MAGEA2B;chrX:152753623-152753788|269|13.78|0.02|9.76|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152753391-152753788|277|27.37|0.03|9.77|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152753391-152753542|267|20.52|0.02|9.74|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152752513-152753788|298|28.03|0.06|8.93|-|ENST00000620710|MAGEA2,MAGEA2;chrX:152752513-152753313|286|46.87|0.07|9.47|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751822-152752394|297|32.94|0.06|9.21|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751574-152753788|270|15.7|0.02|9.72|-|ENST00000611674|MAGEA2,MAGEA2;chrX:152751574-152752394|306|57.07|0.12|8.92|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152751574-152751725|302|47.9|0.07|9.45|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751428-152751509|319|92.49|0.18|9.0|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152714682-152716896|294|25.49|0.02|10.05|+|ENST00000370293|MAGEA2B,MAGEA2B	ENSG00000268606|ENST00000684311|MAGEA2	ENSG00000268606|ENST00000684311|MAGEA2	MULTI-SECPEP	A375_MHC_IP_R2	2	558.7169799804688	2	558.31772	1114.62089	-0.61723	-0.00034461	-1.8231	-0.0010179	-2.4403	-0.0013625	558.3170416708714	87.387	0.80743	88.119	87.611	88.418	0.73232					27	15	3	0	0	0	0.27742	1	33291	33291		51.63	9.5352	1	2666900			26423	522	18953	19105	25878	25878					0.06816137019018242
KMWEKAIKL	9	Oxidation (M)	_KM(Oxidation (M))WEKAIKL_		KM(1)WEKAIKL		KM(51)WEKAIKL	0	0	1		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-MSMS	A375_MHC_IP_R1	1	388.626708984375	3	388.22661	1161.658	0.18953	7.3582E-05	0.87938	0.0003414	1.0689	0.00041498	388.2265208947443	34.077	0.70909	34.077	33.798	34.507	0					33	13	4	0	0	0	0.095445	1	11201	11201		51.488	15.876	1	12477000			26424	5684	18954	19106	25879	25879		300			0.08363808564763531
KMWEKAIKL	9	Oxidation (M)	_KM(Oxidation (M))WEKAIKL_					0	0	1		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	388.22661	1161.658	-0.61292	-0.00023795	0.20165	7.8285E-05	-0.41128	-0.00015967	388.2266821863349	33.53	0.40521	34.282	34.095	34.5	0.75225	0.10264	-0.0001864	NaN	51.488	28	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11456000			26425	5684	18954	19106				300			0.08363808564763531
KMWEKAIKL	9	Unmodified	_KMWEKAIKL_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-SECPEP	A375_MHC_IP_R1	1	383.2950744628906	3	382.894972	1145.66309	0.7138	0.00027331	-0.25326	-9.697E-05	0.46054	0.00017634	382.89482278103003	44.547	0.55983	44.547	44.318	44.878	0					23	10	3	0	0	0	0.26374	1	15534	15534		47.732	32.775	1	10721000			26426	5684	18954	19107	25880	25880					0.09608112427395099
KMWEKAIKL	9	Unmodified	_KMWEKAIKL_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-MSMS	A375_MHC_IP_R2	2	383.2950744628906	3	382.894972	1145.66309	0.061459	2.3532E-05	-0.05543	-2.1224E-05	0.006029	2.3085E-06	382.8949619335484	43.535	0.60614	44.307	44.028	44.634	0.7724					30	11	4	0	0	0	0.037085	2	16183	16179;16183		69.338	48.924	1	14005000			26427	5684	18954	19107	25881;25882	25882					0.09608112427395099
KMWEKAIKL	9	Unmodified	_KMWEKAIKL_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	382.894972	1145.66309	0.061459	2.3532E-05	-0.05543	-2.1224E-05	0.006029	2.3085E-06	382.8949619335484	43.535	0.60614	44.307	44.028	44.634	0.7724	-0.11991	0.0001599	NaN	69.338	30	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14005000			26428	5684	18954	19107							0.09608112427395099
KMWFRFFHGYF	11	Unmodified	_KMWFRFFHGYF_					0	0	0			REV__ENSG00000179387|ENST00000323570|ELMOD2	REV__ENSG00000179387|ENST00000323570|ELMOD2	MSMS	A375_MHC_IP_R2	2	522.6298828125	3	522.588542	1564.7438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.824	1	28.503	28.003	29.003	0.67857								0	0	0	0.16334	1	9554	9554		1.3296	0	1		+		26429	21557	18955	19108	25883	25883					-0.015986065297283858
KMYEEFLSKV	10	Oxidation (M)	_KM(Oxidation (M))YEEFLSKV_		KM(1)YEEFLSKV		KM(140)YEEFLSKV	0	0	1		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	A375_MHC_IP_R1	1	645.7256469726562	2	645.325939	1288.63732	-0.34735	-0.00022416	0.05275	3.4041E-05	-0.2946	-0.00019011	645.3260054358714	53.663	1.016	53.663	52.946	53.962	0					50	19	4	0	0	0	0.002136	2	18992	18992;19204		139.54	97.585	1	17711000			26430	2847;8891	18956	19109	25884;25885	25884		131			0.004551733944254011
KMYEEFLSKV	10	Oxidation (M)	_KM(Oxidation (M))YEEFLSKV_		KM(1)YEEFLSKV		KM(57)YEEFLSKV	0	0	1		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	A375_MHC_IP_R1	1	645.7232666015625	2	645.325939	1288.63732	-0.48338	-0.00031194	-0.17735	-0.00011445	-0.66073	-0.00042639	645.3255801540298	68.659	0.55814	68.659	68.361	68.92	0					17	10	2	0	0	0	0.12874	2	24883	24883;24918		57.477	37.062	1	3419700			26431	2847;8891	18956	19109	25886;25887	25886		131			0.004551733944254011
KMYEEFLSKV	10	Oxidation (M)	_KM(Oxidation (M))YEEFLSKV_		KM(1)YEEFLSKV		KM(130)YEEFLSKV	0	0	1		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	A375_MHC_IP_R2	2	645.7250366210938	2	645.325939	1288.63732	-1.1822	-0.00076288	0.041949	2.7071E-05	-1.1402	-0.00073581	645.3260107451724	52.746	0.86153	53.497	53.082	53.944	0.75105					55	16	4	0	0	0	0.0088303	2	19804	19804;20041		129.39	87.432	1	17245000			26432	2847;8891	18956	19109	25888;25889	25888		131			0.004551733944254011
KMYEEFLSKV	10	Oxidation (M)	_KM(Oxidation (M))YEEFLSKV_		KM(1)YEEFLSKV		KM(92)YEEFLSKV	0	0	1		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	A375_MHC_IP_R2	2	645.7251586914062	2	645.325939	1288.63732	-0.60491	-0.00039036	0.034417	2.221E-05	-0.57049	-0.00036815	645.3258039638741	67.935	0.71178	68.67	68.358	69.07	0.73511					19	13	2	0	0	0	0.010122	1	25737	25737		92.409	54.234	1	4051000			26433	2847;8891	18956	19109	25890	25890		131			0.004551733944254011
KMYEEFLSKV	10	Unmodified	_KMYEEFLSKV_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	A375_MHC_IP_R1	1	425.9556579589844	3	425.221413	1272.64241	-0.16439	-6.9901E-05	0.54956	0.00023369	0.38518	0.00016379	425.2215270200265	68.666	0.457	68.666	68.412	68.869	0					27	8	4	0	0	0	0.38946	1	24903	24903		34.79	23.725	1	4406400			26434	2847;8891	18956	19110	25891	25891					0.01699477257034232
KMYEEFLSKV	10	Unmodified	_KMYEEFLSKV_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-SECPEP	A375_MHC_IP_R1	1	637.7283935546875	2	637.328482	1272.64241	-0.74867	-0.00047715	0.56785	0.0003619	-0.18082	-0.00011524	637.3288999587519	68.59	0.96423	68.59	68.26	69.224	0					51	18	5	0	0	0	0.017076	1	24857	24857		132.22	108.2	1	35245000			26435	2847;8891	18956	19110	25892	25892					0.01699477257034232
KMYEEFLSKV	10	Unmodified	_KMYEEFLSKV_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	A375_MHC_IP_R2	2	425.621337890625	3	425.221413	1272.64241	-0.088877	-3.7792E-05	-0.092661	-3.9402E-05	-0.18154	-7.7194E-05	425.2212997416438	67.9	0.55945	68.636	68.358	68.918	0.73511					28	10	4	0	0	0	0.20671	1	25724	25724		48.561	29.417	1	8855200			26436	2847;8891	18956	19110	25893	25893					0.01699477257034232
KMYEEFLSKV	10	Unmodified	_KMYEEFLSKV_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	A375_MHC_IP_R2	2	637.373779296875	2	637.328482	1272.64241	-0.69878	-0.00044535	0.076431	4.8711E-05	-0.62234	-0.00039664	637.3285972934522	67.944	0.7627	68.679	68.358	69.121	0.73511					45	14	4	0	0	0	2.4807E-05	1	25746	25746		172.26	130.31	1	36854000			26437	2847;8891	18956	19110	25894	25894					0.01699477257034232
KMYEKIDL	8	Unmodified	_KMYEKIDL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	A375_MHC_IP_R1	1	520.1892700195312	2	520.27826	1038.54197	-0.26441	-0.00013757	-0.31832	-0.00016562	-0.58273	-0.00030318	520.2777039714304	92.704	0.71111	92.704	92.211	92.922	0					17	13	2	0	0	0	0.92867	1	33904	33904		18.146	0	1	1124500			26438	7864	18957	19111	25895	25895					0.024238649940798496
KMYGKIIRV	9	Unmodified	_KMYGKIIRV_					0	0	0		ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2	ENSG00000117569|ENST00000674951|PTBP2	ENSG00000117569|ENST00000674951|PTBP2	MULTI-SECPEP	A375_MHC_IP_R1	1	369.5829772949219	3	369.895083	1106.66342	0.12441	4.602E-05	-0.64	-0.00023673	-0.51558	-0.00019071	369.89474471046714	32.984	0.35518	32.984	32.684	33.04	0					10	6	2	0	0	0	0.80535	1	10737	10737		4.5289	2.4429	1	1105000			26439	3493	18958	19112	25896	25896					0.11435532147243066
KMYGKIIRV	9	Unmodified	_KMYGKIIRV_					0	0	0		ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2	ENSG00000117569|ENST00000674951|PTBP2	ENSG00000117569|ENST00000674951|PTBP2	MULTI-SECPEP	A375_MHC_IP_R2	2	370.62939453125	3	369.895083	1106.66342	0.30247	0.00011188	-0.11503	-4.2551E-05	0.18744	6.9333E-05	370.22939118393026	31.855	0.35362	32.592	32.401	32.755	0.73691					17	6	3	0	0	0	0.7911	1	11313	11313		7.609	7.3399	1	3584800			26440	3493	18958	19112	25897	25897					0.11435532147243066
KMYKPEVSMKR	11	Unmodified	_KMYKPEVSMKR_					0	0	0		DIAPH2|p.D982Afs*5|1|0.38|ENSG00000147202|chrX:97348216-97348216|A/-|frameshift_variant;nc|ENSG00000147202|O60879-2|DIAPH2;nc|ENSG00000147202|O60879-3|DIAPH2;ENSG00000147202|ENST00000324765|DIAPH2	DIAPH2|p.D982Afs*5|1|0.38|ENSG00000147202|chrX:97348216-97348216|A/-|frameshift_variant	DIAPH2|p.D982Afs*5|1|0.38|ENSG00000147202|chrX:97348216-97348216|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	466.98724365234375	3	466.25283	1395.73666	-0.63303	-0.00029515	0.40149	0.0001872	-0.23154	-0.00010796	466.5875496231532	131.25	0.86606	131.44	130.93	131.8	0.18954					40	16	4	0	0	0	1.0005	1	51667	51667		2.4348	1.4212	1	3908600			26441	744	18959	19113	25898	25898					0.05462292807533231
KMYSGPYEV	9	Oxidation (M)	_KM(Oxidation (M))YSGPYEV_		KM(1)YSGPYEV		KM(42)YSGPYEV	0	0	1		ENST00000456235.1_1_17:20979020-20979053:+|nuORF	ENST00000456235.1_1_17:20979020-20979053:+|nuORF	ENST00000456235.1_1_17:20979020-20979053:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	545.6490478515625	2	545.2497	1088.48485	-0.54961	-0.00029968	-0.07255	-3.9558E-05	-0.62216	-0.00033923	545.2495519513537	36.086	0.71077	36.086	35.778	36.489	0					24	13	2	0	0	0	0.14858	1	12031	12031		41.956	7.8531	1	3570400			26442	12127	18960	19114	25899	25899		456			-0.055856022823036255
KMYTWMKEF	9	Unmodified	_KMYTWMKEF_					0	0	0			REV__nc|ENSG00000155511|P42261-3|GRIA1	REV__nc|ENSG00000155511|P42261-3|GRIA1	MULTI-MSMS	A375_MHC_IP_R2	2	632.9921264648438	2	632.29867	1262.58279	-0.85411	-0.00054005	0.74154	0.00046887	-0.11257	-7.1177E-05	632.2990666305717	45.359	0.65609	46.124	45.796	46.453	0.76519					25	12	3	0	0	0	0.70886	1	16924	16924		6.2058	0.47393	1	5329700	+		26443	19926	18961	19115	25900	25900					-0.03800116957972932
KNAKRILPLNY	11	Unmodified	_KNAKRILPLNY_					0	0	0			REV__ENST00000265339.6_1_5:133726056-133726119:+|nuORF	REV__ENST00000265339.6_1_5:133726056-133726119:+|nuORF	MSMS	A375_MHC_IP_R1	1	665.8449096679688	2	665.403704	1328.79285	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.26	1	117.26	116.76	117.76	0								0	0	0	0.16249	1	43042	43042		5.7319	0	1		+		26444	23247	18962	19116	25901	25901					0.1416100503092821
KNANLLIKEIK	11	Unmodified	_KNANLLIKEIK_					0	0	0		tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	429.0065612792969	3	428.606367	1282.79727	0.2041	8.7477E-05	-0.25851	-0.0001108	-0.054411	-2.3321E-05	428.6062248663949	22.139	0.30488	22.139	21.962	22.267	0					9	5	2	0	0	0	0.73807	1	5946	5946		1.2148	0.588	1	1492100			26445	30038	18963	19117	25902	25902					0.16718469453780926
KNDLASKHI	9	Unmodified	_KNDLASKHI_					0	0	0			REV__tr|U7SKH4|U7SKH4_FUSNUCys-tRNA(Pro)/Cys-tRNA(Cys)deacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01993PE=3SV=1	REV__tr|U7SKH4|U7SKH4_FUSNUCys-tRNA(Pro)/Cys-tRNA(Cys)deacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01993PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	513.6685180664062	2	513.290548	1024.56654	-0.046817	-2.4031E-05	-0.11084	-5.6895E-05	-0.15766	-8.0925E-05	513.2900567827819	113.3	0.45506	113.3	113.04	113.5	0					9	8	2	0	0	0	0.63327	1	41504	41504		13.042	0	1	816510	+		26446	28251	18964	19118	25903	25903					0.055242611917947215
KNEETDEF	8	Unmodified	_KNEETDEF_					0	0	0			REV__nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	REV__nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	MULTI-MSMS	A375_MHC_IP_R2	2	505.663330078125	2	506.216911	1010.41927	-0.75268	-0.00038102	-0.26291	-0.00013309	-1.0156	-0.00051411	506.2167505945564	31.406	0.51111	32.125	31.923	32.434	0.71856					14	9	2	0	0	0	0.77702	1	11204	11204		5.7604	1.4312	1	2815800	+		26447	17241	18965	19119	25904	25904					-0.0855230020365525
KNEFSIMIP	9	Unmodified	_KNEFSIMIP_					0	0	0			REV__tr|U7T2F7|U7T2F7_FUSNUGTPaseDerOS=FusobacteriumnucleatumCTI-5OX=1316586GN=derPE=3SV=1	REV__tr|U7T2F7|U7T2F7_FUSNUGTPaseDerOS=FusobacteriumnucleatumCTI-5OX=1316586GN=derPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	360.625	3	360.191565	1077.55287	-0.46398	-0.00016712	3.8465	0.0013855	3.3825	0.0012183	360.5271692327791	18.905	0.23048	19.508	19.452	19.683	0.60308					6	4	2	0	0	0	0.78348	1	5777	5777		0.96228	0.0979	1	4375500	+		26448	28739	18966	19120	25905	25905					0.017192673683439352
KNEHLHFK	8	Unmodified	_KNEHLHFK_					0	0	0			REV__ENSG00000170160|ENST00000399273|CCDC144A	REV__ENSG00000170160|ENST00000399273|CCDC144A	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1637573242188	2	526.785433	1051.55631	-0.98945	-0.00052123	-0.53046	-0.00027944	-1.5199	-0.00080067	526.7852617480702	28.56	0.20303	29.259	29.08	29.283	0.69872					5	3	2	0	0	0	0.96266	1	9795	9795		11.64	1.5664	1	21364000	+		26449	20969	18967	19121	25906	25906					0.03259698257238597
KNEIAKKRY	9	Unmodified	_KNEIAKKRY_					0	0	0		tr|U7SSP1|U7SSP1_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01520PE=4SV=1	tr|U7SSP1|U7SSP1_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01520PE=4SV=1	tr|U7SSP1|U7SSP1_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01520PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	383.2524719238281	3	383.89614	1148.66659	-0.54443	-0.00020901	-0.013638	-5.2355E-06	-0.55807	-0.00021424	383.89622544343314	26.045	0.5605	26.704	26.347	26.907	0.65992					15	10	2	0	0	0	0.80535	1	8778	8778		2.2828	1.0894	1	2009200			26450	29641	18968	19122	25907	25907					0.09820498525618859
KNEKKRKRRRK	11	Unmodified	_KNEKKRKRRRK_					0	0	0			REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1	REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1	MSMS	A375_MHC_IP_R2	2	763.9953002929688	2	763.994949	1525.97534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.31	1	125.6	125.1	126.1	0.2951								0	0	0	0.16355	1	48802	48802		0.26902	0.26902	1		+		26451	21908	18969	19123	25908	25908					0.23339577216165708
KNEKLARLF	9	Unmodified	_KNEKLARLF_					0	0	0			REV__ENSG00000203485|ENST00000392634|INF2	REV__ENSG00000203485|ENST00000392634|INF2	MULTI-SECPEP	A375_MHC_IP_R1	1	373.9607238769531	3	373.560869	1117.66078	0.33515	0.0001252	-0.19758	-7.3809E-05	0.13757	5.139E-05	373.56066281255056	75.144	0.35429	75.144	74.908	75.262	0					11	6	2	0	0	0	0.79191	1	27402	27402		2.086	0.97625	1	1154300	+		26452	22462	18970	19124	25909	25909					0.10665400013931503
KNEKLARLF	9	Unmodified	_KNEKLARLF_					0	0	0			REV__ENSG00000203485|ENST00000392634|INF2	REV__ENSG00000203485|ENST00000392634|INF2	MULTI-MATCH	A375_MHC_IP_R2	2		3	373.560869	1117.66078	0.39033	0.00014581	-0.12934	-4.8318E-05	0.26098	9.7492E-05	373.56081896481334	74.176	0.35419	74.913	74.604	74.958	0.73751	-0.11559	1.4857E-05	NaN	2.086	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	857130	+		26453	22462	18970	19124							0.10665400013931503
KNEKVEKSSKY	11	Unmodified	_KNEKVEKSSKY_					0	0	0		tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	MSMS	A375_MHC_IP_R2	2	670.782958984375	2	670.364441	1338.71433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.7	1	118.31	117.81	118.81	0.60909								0	0	0	0.16112	1	44569	44569		12.873	0.63195	1				26454	29667	18971	19125	25910	25910					0.05852107935152162
KNELLRFQLS	10	Unmodified	_KNELLRFQLS_					0	0	0			REV__ENSG00000151790|ENST00000536354|TDO2	REV__ENSG00000151790|ENST00000536354|TDO2	MULTI-MSMS	A375_MHC_IP_R1	1	625.4164428710938	2	624.358962	1246.70337	-0.7954	-0.00049661	0.48908	0.00030536	-0.30632	-0.00019125	624.3592099830556	67.089	0.97043	67.089	66.632	67.603	0					49	18	4	0	0	0	0.71175	2	24352	24352;24371		11.495	4.801	1	16530000	+		26455	19775	18972	19126	25911;25912	25911					0.08988750351522867
KNEQPWRF	8	Unmodified	_KNEQPWRF_					0	0	0			REV__SCN7A|p.E275K|1|0.13|ENSG00000136546|chr2:166465829-166465829|C/T|missense_variant	REV__SCN7A|p.E275K|1|0.13|ENSG00000136546|chr2:166465829-166465829|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	368.24163818359375	3	368.857686	1103.55123	0.18301	6.7504E-05	0.17233	6.3566E-05	0.35534	0.00013107	368.8576766825616	32.756	0.40554	33.493	33.317	33.722	0.73692					10	7	2	0	0	0	0.91495	1	11708	11708		13.906	6.2971	1	2129500	+		26456	27923	18973	19127	25913	25913					0.0035939439460435096
KNEQPWRF	8	Unmodified	_KNEQPWRF_					0	0	0			REV__SCN7A|p.E275K|1|0.13|ENSG00000136546|chr2:166465829-166465829|C/T|missense_variant	REV__SCN7A|p.E275K|1|0.13|ENSG00000136546|chr2:166465829-166465829|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	368.857686	1103.55123	0.34831	0.00012848	0.40628	0.00014986	0.75459	0.00027834	369.192277478803	33.652	0.45389	33.652	33.445	33.898	0	0.079383	0.00013755	NaN	13.906	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1188500	+		26457	27923	18973	19127							0.0035939439460435096
KNERGPLKMKR	11	Unmodified	_KNERGPLKMKR_					0	0	0			REV__ENST00000552347.5_1_19:49119841-49120189:-|nuORF	REV__ENST00000552347.5_1_19:49119841-49120189:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	452.33245849609375	3	452.934601	1355.78197	-0.52104	-0.000236	1.7775	0.00080511	1.2565	0.00056911	452.9353562275171	138.23	0.20276	138.23	138.1	138.31	0					5	3	2	0	0	0	1.0014	1	53163	53163		0.45452	0	1	453070	+		26458	16466	18974	19128	25914	25914					0.11831279384955451
KNESKLEREHK	11	Unmodified	_KNESKLEREHK_					0	0	0		BOD1L1|p.S2975Lfs*72|1|0.17|ENSG00000038219|chr4:13576953-13576953|A/-|frameshift_variant;ENSG00000038219|ENST00000040738|BOD1L1	BOD1L1|p.S2975Lfs*72|1|0.17|ENSG00000038219|chr4:13576953-13576953|A/-|frameshift_variant	BOD1L1|p.S2975Lfs*72|1|0.17|ENSG00000038219|chr4:13576953-13576953|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	699.8081665039062	2	699.378414	1396.74228	-0.66292	-0.00046363	-0.40853	-0.00028572	-1.0714	-0.00074935	699.3779279270892	132.24	0.61249	132.43	132.15	132.76	0.18953					36	11	4	0	0	0	0.73672	1	52042	52042		2.4985	2.4985	1	8950000			26459	243	18975	19129	25915	25915					0.0597743091520897
KNETYKAQRK	10	Unmodified	_KNETYKAQRK_					0	0	0			REV__ENST00000483628.1_1:206566231-206579954:+|nuORF	REV__ENST00000483628.1_1:206566231-206579954:+|nuORF	MSMS	A375_MHC_IP_R2	2	633.2464599609375	2	633.351668	1264.68878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.53	1	125.83	125.33	126.33	0.2951								0	0	0	0.15265	1	48986	48986		12.241	0	1		+		26460	22187	18976	19130	25916	25916					0.06702678203350843
KNFIDTNGY	9	Unmodified	_KNFIDTNGY_					0	0	0		tr|U7SL89|U7SL89_FUSNUPolyribonucleotidenucleotidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pnpPE=3SV=1	tr|U7SL89|U7SL89_FUSNUPolyribonucleotidenucleotidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pnpPE=3SV=1	tr|U7SL89|U7SL89_FUSNUPolyribonucleotidenucleotidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pnpPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	536.6583251953125	2	536.258914	1070.50327	-0.84508	-0.00045318	-0.23986	-0.00012863	-1.0849	-0.00058181	536.2587978098859	65.641	0.61129	65.641	65.411	66.022	0					16	11	2	0	0	0	0.65721	1	23785	23785		10.824	0.75	1	2501700			26461	29496	18977	19131	25917	25917					-0.029157243160852886
KNFIDTNGY	9	Unmodified	_KNFIDTNGY_					0	0	0		tr|U7SL89|U7SL89_FUSNUPolyribonucleotidenucleotidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pnpPE=3SV=1	tr|U7SL89|U7SL89_FUSNUPolyribonucleotidenucleotidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pnpPE=3SV=1	tr|U7SL89|U7SL89_FUSNUPolyribonucleotidenucleotidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pnpPE=3SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	536.258914	1070.50327	-0.88507	-0.00047462	-0.079208	-4.2476E-05	-0.96427	-0.0005171	536.2590116244864	64.889	0.55882	65.627	65.359	65.918	0.73812	-0.0071152	0.00011229	NaN	10.824	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2138400			26462	29496	18977	19131							-0.029157243160852886
KNFIHTTF	8	Unmodified	_KNFIHTTF_					0	0	0			REV__ENSG00000167554|ENST00000403906|ZNF610	REV__ENSG00000167554|ENST00000403906|ZNF610	MULTI-SECPEP	A375_MHC_IP_R1	1	504.1737365722656	2	504.269084	1006.52362	-0.49581	-0.00025002	-1.3062	-0.00065866	-1.802	-0.00090868	504.2666871348301	33.085	0.30344	33.085	32.887	33.19	0					11	5	3	0	0	0	0.8957	1	10672	10672		28.487	20.577	1	1830100	+		26463	20772	18978	19132	25918	25918					0.020614911343727726
KNFIHTTF	8	Unmodified	_KNFIHTTF_					0	0	0			REV__ENSG00000167554|ENST00000403906|ZNF610	REV__ENSG00000167554|ENST00000403906|ZNF610	MULTI-MATCH	A375_MHC_IP_R2	2		2	504.269084	1006.52362	-0.71707	-0.0003616	-0.060569	-3.0543E-05	-0.77764	-0.00039214	504.2680204263684	32.35	0.55944	33.087	32.909	33.468	0.73692	0.00062668	0.00067456	NaN	28.487	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3749500	+		26464	20772	18978	19132							0.020614911343727726
KNFKKFYEYD	10	Unmodified	_KNFKKFYEYD_					0	0	0		tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	MSMS	A375_MHC_IP_R2	2	691.2491455078125	2	691.342978	1380.6714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.229	1	84.968	84.468	85.468	0.73962								0	0	0	0.15435	1	32016	32016		6.7232	0.99131	1				26465	29924	18979	19133	25919	25919					-0.003706621222818285
KNFKKRWFRLT	11	Unmodified	_KNFKKRWFRLT_					0	0	0		ENSG00000185989|ENST00000334062|RASA3;nc|ENSG00000185989|Q14644-2|RASA3	ENSG00000185989|ENST00000334062|RASA3	ENSG00000185989|ENST00000334062|RASA3	MSMS	A375_MHC_IP_R1	1	762.4966430664062	2	762.45152	1522.88849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.6	1	115.6	115.1	116.1	0								0	0	0	0.16334	1	42394	42394		1.3295	0.9789	1				26466	8714	18980	19134	25920	25920					0.14795777941776578
KNGLFTPFLY	10	Unmodified	_KNGLFTPFLY_					0	0	0			REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	MULTI-SECPEP	A375_MHC_IP_R2	2	400.9749755859375	3	400.553492	1198.63865	-0.30559	-0.00012241	0.81216	0.00032531	0.50657	0.00020291	400.8875579279386	19.054	0.19984	19.658	19.583	19.783	0.60308					5	3	2	0	0	0	0.91556	1	5856	5856		5.7834	0	1	1279600	+		26467	27439	18981	19135	25921	25921					0.04727175545508544
KNHQEYYFWYL	11	Unmodified	_KNHQEYYFWYL_					0	0	0		ENST00000519969.5_2_8:93966716-93977788:-|nuORF;ENST00000524107.5_2_8:93966716-93978097:-|nuORF;ENST00000521988.5_2_8:93966716-93978353:-|nuORF	ENST00000519969.5_2_8:93966716-93977788:-|nuORF	ENST00000519969.5_2_8:93966716-93977788:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	531.6212158203125	3	530.917381	1589.73031	-0.61726	-0.00032771	2.4371	0.0012939	1.8199	0.00096619	530.9186580499096	87.645	0.25604	87.645	87.491	87.747	0					6	4	2	0	0	0	1.0014	1	32117	32117		0.094841	0.011491	1	1228800			26468	12986	18982	19136	25922	25922					-0.040961858279615626
KNIDAKKIYV	10	Unmodified	_KNIDAKKIYV_					0	0	0		tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	MSMS	A375_MHC_IP_R1	1	596.4242553710938	2	596.358431	1190.70231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.23	1	132.23	131.73	132.73	0								0	0	0	0.15531	1	50986	50986		3.5965	0.60125	1				26469	29458	18983	19137	25923	25923					0.11458535982615103
KNIHLDRTLHW	11	Unmodified	_KNIHLDRTLHW_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MSMS	A375_MHC_IP_R1	1	716.8862915039062	2	716.894035	1431.77352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.49	1	119.49	118.99	119.99	0								0	0	0	0.16232	1	44172	44172		6.6304	0.89852	1		+		26470	16799	18984	19138	25924	25924					0.07490048739987287
KNIVIEKVR	9	Unmodified	_KNIVIEKVR_					0	0	0			REV__ENSG00000176177|ENST00000325157|ENTHD1	REV__ENSG00000176177|ENST00000325157|ENTHD1	MULTI-MSMS	A375_MHC_IP_R1	1	367.624267578125	3	366.904636	1097.69208	0.27241	9.9948E-05	-0.57293	-0.00021021	-0.30052	-0.00011026	366.9043582978474	25.105	0.81276	25.105	24.749	25.562	0					29	15	3	0	0	0	0.62591	1	7409	7409		13.615	0	1	7036900	+		26471	21390	18985	19139	25925	25925					0.14713973048037587
KNIVLIPIKY	10	Unmodified	_KNIVLIPIKY_					0	0	0			REV__nc|ENSG00000105889|Q6NZ63|STEAP1B	REV__nc|ENSG00000105889|Q6NZ63|STEAP1B	MSMS	A375_MHC_IP_R2	2	400.93023681640625	3	400.92867	1199.76418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.468	1	24.098	23.598	24.598	0.63014								0	0	0	0.15435	1	7555	7555		3.5871	1.1523	1		+		26472	15772	18986	19140	25926	25926					0.17228887401734028
KNIYGDKNI	9	Unmodified	_KNIYGDKNI_					0	0	0			REV__nc|ENSG00000182132|Q9NZI2-3|KCNIP1	REV__nc|ENSG00000182132|Q9NZI2-3|KCNIP1	MULTI-MSMS	A375_MHC_IP_R2	2	355.9290771484375	3	355.529346	1063.56621	-0.46902	-0.00016675	0.012956	4.6063E-06	-0.45607	-0.00016215	355.5293081496473	41.168	0.35562	41.942	41.743	42.098	0.77451					9	6	2	0	0	0	0.65721	1	15297	15297		7.1017	0.47135	1	2878100	+		26473	21673	18987	19141	25927	25927					0.036968414719467546
KNIYGDKNI	9	Unmodified	_KNIYGDKNI_					0	0	0			REV__nc|ENSG00000182132|Q9NZI2-3|KCNIP1	REV__nc|ENSG00000182132|Q9NZI2-3|KCNIP1	MULTI-MATCH	A375_MHC_IP_R1	1		3	355.529346	1063.56621	-0.042588	-1.5141E-05	0.48909	0.00017388	0.4465	0.00015874	355.86385836546197	42.029	0.35313	42.029	41.88	42.233	0	0.043529	0.00018732	NaN	7.1017	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2212400	+		26474	21673	18987	19141							0.036968414719467546
KNKDYKNYNIY	11	Unmodified	_KNKDYKNYNIY_					0	0	0		tr|U7SLK8|U7SLK8_FUSNUPolysaccharidebiosynthesisproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01961PE=4SV=1	tr|U7SLK8|U7SLK8_FUSNUPolysaccharidebiosynthesisproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01961PE=4SV=1	tr|U7SLK8|U7SLK8_FUSNUPolysaccharidebiosynthesisproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01961PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	732.2699584960938	2	731.869891	1461.72523	-0.30462	-0.00022294	-0.7303	-0.00053448	-1.0349	-0.00075743	731.869304644432	107.72	0.61082	107.72	107.49	108.1	0					26	11	3	0	0	0	0.9574	1	39527	39527		14.405	0	1	9579600			26475	29504	18988	19142	25928	25928					0.012835103094403166
KNKGVGVH	8	Unmodified	_KNKGVGVH_					0	0	0			REV__ENSG00000108826|ENST00000225969|MRPL27	REV__ENSG00000108826|ENST00000225969|MRPL27	MULTI-MSMS	A375_MHC_IP_R1	1	839.4622192382812	1	838.489362	837.482085	-0.084747	-7.1059E-05	2.2775	0.0019097	2.1927	0.0018386	838.4940759231675	116.98	0.25494	116.98	116.75	117.01	0					6	4	2	0	0	0	0.77702	1	42929	42929		5.7604	0.52976	1	4571600	+		26476	17557	18989	19143	25929	25929					0.056843551657038915
KNKIWVNEFRY	11	Unmodified	_KNKIWVNEFRY_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	A375_MHC_IP_R2	2	749.8037719726562	2	748.904068	1495.79358	-0.97098	-0.00072717	-1.0243	-0.00076707	-1.9952	-0.0014942	749.4047212669052	62.447	0.40802	63.19	62.925	63.333	0.74263					11	7	2	0	0	0	0.7359	1	23685	23685		3.2813	0.28607	1	1717700			26477	6906	18990	19144	25930	25930					0.06551799679914438
KNKIWVNEFRY	11	Unmodified	_KNKIWVNEFRY_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	748.904068	1495.79358	-0.45869	-0.00034351	-1.2275	-0.00091928	-1.6862	-0.0012628	749.4042411171727	63.281	0.46067	63.281	62.966	63.427	0	0.04566	-0.00016919	NaN	3.2813	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1941900			26478	6906	18990	19144							0.06551799679914438
KNKKKKNKKKG	11	Unmodified	_KNKKKKNKKKG_					0	0	0			REV__ENSG00000123352|ENST00000552918|SPATS2	REV__ENSG00000123352|ENST00000552918|SPATS2	MSMS	A375_MHC_IP_R1	1	665.0114135742188	2	664.94607	1327.87759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.77	1	118.77	118.27	119.27	0								0	0	0	0.16334	1	43804	43804		1.3295	0	1		+		26479	18238	18991	19145	25931	25931					0.22676375567493778
KNKKKKNKKKG	11	Unmodified	_KNKKKKNKKKG_					0	0	0			REV__ENSG00000123352|ENST00000552918|SPATS2	REV__ENSG00000123352|ENST00000552918|SPATS2	MSMS	A375_MHC_IP_R1	1	664.9702758789062	2	664.94607	1327.87759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.86	1	118.86	118.36	119.36	0								0	0	0	0.16334	1	43847	43847		1.3295	0	1		+		26480	18238	18991	19145	25932	25932					0.22676375567493778
KNKNDLFE	8	Unmodified	_KNKNDLFE_					0	0	0		ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1008.5864868164062	1	1007.51564	1006.50836	-0.071069	-7.1603E-05	3.2827	0.0033074	3.2117	0.0032358	1007.5194608250503	124.67	0.30403	124.67	124.54	124.85	0					7	5	2	0	0	0	0.73946	1	47175	47175		23.148	1.4018	1	34806000			26481	12479	18992	19146	25933	25933					0.005365795465081646
KNKPEYDSE	9	Unmodified	_KNKPEYDSE_					0	0	0			REV__ENSG00000153922|ENST00000614616|CHD1	REV__ENSG00000153922|ENST00000614616|CHD1	MULTI-MSMS	A375_MHC_IP_R2	2	370.59246826171875	3	370.508499	1108.50367	0.27499	0.00010188	1.0322	0.00038245	1.3072	0.00048433	370.5087334363952	32.807	0.15195	33.544	33.468	33.62	0.73692					4	2	2	0	0	0	0.75978	1	11677	11677		0.86438	0.23755	1	569530	+		26482	19855	18993	19147	25934	25934					-0.046243493869269514
KNKPLMRKV	9	Unmodified	_KNKPLMRKV_					0	0	0			REV__tr|U7SPC7|U7SPC7_FUSNULargeribosomalsubunitproteinuL13OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplMPE=3SV=1	REV__tr|U7SPC7|U7SPC7_FUSNULargeribosomalsubunitproteinuL13OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplMPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	371.9493713378906	3	371.902349	1112.68522	0.16647	6.191E-05	0.53768	0.00019996	0.70414	0.00026187	372.237052886294	37.838	0.56158	37.838	37.607	38.168	0					15	10	2	0	0	0	0.75032	1	12820	12820		2.4985	0	1	1181500	+		26483	28356	18994	19148	25935	25935					0.13338336895822067
KNKRDYHEHRH	11	Unmodified	_KNKRDYHEHRH_					0	0	0		RIOK2|p.K143E|1|0.22|ENSG00000058729|chr5:97177187-97177187|T/C|missense_variant	RIOK2|p.K143E|1|0.22|ENSG00000058729|chr5:97177187-97177187|T/C|missense_variant	RIOK2|p.K143E|1|0.22|ENSG00000058729|chr5:97177187-97177187|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	760.4970703125	2	760.384897	1518.75524	-0.015717	-1.1951E-05	0.19246	0.00014634	0.17674	0.00013439	760.8855586573352	114.59	0.3571	114.59	114.31	114.67	0					8	6	2	0	0	0	0.99738	1	41939	41939		5.2969	2.0156	1	6933800			26484	29081	18995	19149	25936	25936					0.01661306817982222
KNKRDYHEHRH	11	Unmodified	_KNKRDYHEHRH_					0	0	0		RIOK2|p.K143E|1|0.22|ENSG00000058729|chr5:97177187-97177187|T/C|missense_variant	RIOK2|p.K143E|1|0.22|ENSG00000058729|chr5:97177187-97177187|T/C|missense_variant	RIOK2|p.K143E|1|0.22|ENSG00000058729|chr5:97177187-97177187|T/C|missense_variant	MSMS	A375_MHC_IP_R2	2	760.2849731445312	2	760.384897	1518.75524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.5	1	118.16	117.66	118.66	0.65939								0	0	0	0.16258	1	44475	44475		5.2969	0.76802	1				26485	29081	18995	19149	25937	25937					0.01661306817982222
KNKSKLQYWLH	11	Unmodified	_KNKSKLQYWLH_					0	0	0		ENSG00000198785|ENST00000361820|GRIN3A	ENSG00000198785|ENST00000361820|GRIN3A	ENSG00000198785|ENST00000361820|GRIN3A	MULTI-SECPEP	A375_MHC_IP_R1	1	482.5057067871094	3	482.273499	1443.79867	-0.43795	-0.00021121	-2.1813	-0.001052	-2.6193	-0.0012632	482.2726085127642	33.205	0.15112	33.205	33.09	33.241	0					4	2	2	0	0	0	1.0004	1	10804	10804		2.6312	1.5215	1	1960000			26486	9323	18996	19150	25938	25938					0.09452103542571422
KNKTISQLN	9	Unmodified	_KNKTISQLN_					0	0	0		ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	MULTI-MSMS	A375_MHC_IP_R1	1	523.702880859375	2	523.303655	1044.59276	-0.65494	-0.00034274	-0.42412	-0.00022194	-1.0791	-0.00056468	523.3033279864204	124.94	1.2579	124.94	124.34	125.6	0					55	24	3	0	0	0	0.65721	1	47447	47447		10.824	0.75	1	153110000			26487	1644	18997	19151	25939	25939					0.07224530363305348
KNKTKNITI	9	Unmodified	_KNKTKNITI_					0	0	0		MYCBP2|p.V4031Lfs*3|1|0.12|ENSG00000005810|chr13:77067831-77067832|-/AACAG|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.V4031Lfs*3|1|0.12|ENSG00000005810|chr13:77067831-77067832|-/AACAG|frameshift_variant	MYCBP2|p.V4031Lfs*3|1|0.12|ENSG00000005810|chr13:77067831-77067832|-/AACAG|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	354.288818359375	3	353.888874	1058.64479	-0.016532	-5.8503E-06	-0.18696	-6.6164E-05	-0.2035	-7.2015E-05	353.8887809077276	33.573	0.40587	33.573	33.342	33.748	0					18	7	3	0	0	0	0.76106	1	10972	10972		6.1918	0.40842	1	5736800			26488	899	18998	19152	25940	25940					0.11781693777038527
KNKVKDYEKKK	11	Unmodified	_KNKVKDYEKKK_					0	0	0		nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16;nc|ENSG00000156256|Q9Y5T5-5|USP16;ENST00000474835.5_1_21:30400234-30414894:+|nuORF;nc|ENSG00000156256|Q9Y5T5-4|USP16	nc|ENSG00000156256|Q9Y5T5-3|USP16	nc|ENSG00000156256|Q9Y5T5-3|USP16	MULTI-MSMS	A375_MHC_IP_R1	1	470.34857177734375	3	469.948793	1406.82455	-0.62815	-0.0002952	-0.55227	-0.00025954	-1.1804	-0.00055474	469.94885476118066	23.713	0.55869	23.713	23.635	24.194	0					13	10	2	0	0	0	0.73795	1	6610	6610		1.3296	0.11481	1	4631900			26489	6183	18999	19153	25941	25941					0.13740952994135114
KNKVSSSPQH	10	Unmodified	_KNKVSSSPQH_					0	0	0		TNN|p.E337K|1|0.4|ENSG00000120332|chr1:175080387-175080387|G/A|missense_variant	TNN|p.E337K|1|0.4|ENSG00000120332|chr1:175080387-175080387|G/A|missense_variant	TNN|p.E337K|1|0.4|ENSG00000120332|chr1:175080387-175080387|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	370.62939453125	3	371.2	1110.57817	0.39527	0.00014673	2.2257	0.00082619	2.621	0.00097292	371.5347615982935	31.893	0.30315	32.63	32.401	32.704	0.73692					6	5	2	0	0	0	0.93799	1	11313	11313		0.62683	0.12087	1	759100			26490	29371	19000	19154	25942	25942					0.027304582151600698
KNKWFFQKLRF	11	Unmodified	_KNKWFFQKLRF_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-MSMS	A375_MHC_IP_R1	1	515.0294189453125	3	514.629506	1540.86669	-0.60286	-0.00031025	0.45486	0.00023409	-0.148	-7.6163E-05	514.6297321836701	65.13	0.5089	65.13	64.851	65.36	0					15	9	2	0	0	0	0.72713	1	23606	23606		11.631	10.176	1	1870000			26491	4332	19001	19155	25943	25943					0.11788973193188212
KNKWFFQKLRF	11	Unmodified	_KNKWFFQKLRF_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-SECPEP	A375_MHC_IP_R1	1	386.62420654296875	4	386.223949	1540.86669	0.15619	6.0323E-05	0.35395	0.0001367	0.51013	0.00019703	386.47478550249866	65.103	0.50802	65.103	64.903	65.411	0					21	9	3	0	0	0	0.98336	1	23588	23588		19.144	17.929	1	2495200			26492	4332	19001	19155	25944	25944					0.11788973193188212
KNKWFFQKLRF	11	Unmodified	_KNKWFFQKLRF_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-SECPEP	A375_MHC_IP_R2	2	386.62420654296875	4	386.223949	1540.86669	-0.056684	-2.1893E-05	0.028778	1.1115E-05	-0.027906	-1.0778E-05	386.47471893640943	64.116	0.61028	64.856	64.547	65.157	0.74022					27	11	3	0	0	0	0.72028	1	24296	24296		23.964	23.51	1	2246800			26493	4332	19001	19155	25945	25945					0.11788973193188212
KNKWFFQKLRF	11	Unmodified	_KNKWFFQKLRF_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-MATCH	A375_MHC_IP_R2	2		3	514.629506	1540.86669	-0.68517	-0.00035261	0.048499	2.4959E-05	-0.63667	-0.00032765	514.6295620868113	64.078	0.30556	64.818	64.648	64.954	0.74022	-0.15618	-0.0002571	NaN	11.631	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	803640			26494	4332	19001	19155							0.11788973193188212
KNKYLKKF	8	Unmodified	_KNKYLKKF_					0	0	0			REV__ENST00000543809.5_1_12:28605516-28605582:+|nuORF	REV__ENST00000543809.5_1_12:28605516-28605582:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	357.6058654785156	3	356.890327	1067.64915	-0.5097	-0.00018191	0.32748	0.00011688	-0.18222	-6.5033E-05	356.8903282169234	23.464	0.50541	24.094	23.828	24.333	0.63014					16	9	2	0	0	0	0.972	1	7502	7502		3.2813	0	1	3649800	+		26495	25980	19002	19156	25946	25946					0.11803202990586215
KNLFFPNTEP	10	Unmodified	_KNLFFPNTEP_					0	0	0		ENST00000475922.1_1_2:11959598-11964914:+|nuORF;nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1	ENST00000475922.1_1_2:11959598-11964914:+|nuORF	ENST00000475922.1_1_2:11959598-11964914:+|nuORF	MSMS	A375_MHC_IP_R1	1	603.72998046875	2	603.811313	1205.60807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.389	1	39.389	38.889	39.889	0								0	0	0	0.14925	1	13455	13455		19.257	2.1441	1				26496	4568	19003	19157	25947	25947					0.013493971604702892
KNLHKRAAPL	10	Unmodified	_KNLHKRAAPL_					0	0	0			REV__ENSG00000197601|ENST00000354817|FAR1	REV__ENSG00000197601|ENST00000354817|FAR1	MULTI-SECPEP	A375_MHC_IP_R2	2	383.9374694824219	3	383.24013	1146.69856	-0.18988	-7.277E-05	0.065171	2.4976E-05	-0.12471	-4.7794E-05	383.2401751619673	40.458	0.25265	41.233	41.082	41.335	0.77451					7	4	2	0	0	0	0.93406	1	14966	14966		3.5871	1.0886	1	1277100	+		26497	22303	19004	19158	25948	25948					0.13107910999406158
KNLKEQHL	8	Unmodified	_KNLKEQHL_					0	0	0		ENST00000424895.1_1_2:19169098-19226432:-|nuORF	ENST00000424895.1_1_2:19169098-19226432:-|nuORF	ENST00000424895.1_1_2:19169098-19226432:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	504.6979064941406	2	505.293091	1008.57163	-0.72969	-0.00036871	0.40526	0.00020478	-0.32442	-0.00016393	505.7948749289963	31.538	0.30632	32.257	32.026	32.332	0.71857					9	5	2	0	0	0	0.93661	1	11186	11186		21.747	10.106	1	1865400			26498	11781	19005	19159	25949	25949					0.06768565054414921
KNLKEQHL	8	Unmodified	_KNLKEQHL_					0	0	0		ENST00000424895.1_1_2:19169098-19226432:-|nuORF	ENST00000424895.1_1_2:19169098-19226432:-|nuORF	ENST00000424895.1_1_2:19169098-19226432:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	505.293091	1008.57163	-0.54409	-0.00027493	0.209	0.00010561	-0.33509	-0.00016932	505.2929981772	32.376	0.25403	32.376	32.231	32.485	0	0.059812	-0.00013762	NaN	21.747	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2425400			26499	11781	19005	19159							0.06768565054414921
KNLKKKLKAI	10	Unmodified	_KNLKKKLKAI_					0	0	0		nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	MSMS	A375_MHC_IP_R1	1	395.7057800292969	3	395.279814	1182.81761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.94	1	141.94	141.44	142.44	0								0	0	0	0.15637	1	54468	54468		0.15932	0	1				26500	5527	19006	19160	25950	25950					0.23351684904264403
KNLKSKFEK	9	Unmodified	_KNLKSKFEK_					0	0	0		NEXN|p.G456E|1|0.08|ENSG00000162614|chr1:77935938-77935938|G/A|missense_variant;nc|ENSG00000162614|Q0ZGT2-4|NEXN;nc|ENSG00000162614|Q0ZGT2-3|NEXN;nc|ENSG00000162614|Q0ZGT2-2|NEXN;ENSG00000162614|ENST00000334785|NEXN	NEXN|p.G456E|1|0.08|ENSG00000162614|chr1:77935938-77935938|G/A|missense_variant	NEXN|p.G456E|1|0.08|ENSG00000162614|chr1:77935938-77935938|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	373.9183044433594	3	374.560758	1120.66044	0.20818	7.7975E-05	-1.3609	-0.00050975	-1.1528	-0.00043178	374.5605912340861	25.618	0.5594	25.618	25.357	25.917	0					22	10	3	0	0	0	0.75519	1	7482	7482		14.405	9.1085	1	11725000			26501	6561	19007	19161	25951	25951					0.10493980294063476
KNLLRERNNY	10	Unmodified	_KNLLRERNNY_					0	0	0			REV__nc|ENSG00000149554|O14757-2|CHEK1	REV__nc|ENSG00000149554|O14757-2|CHEK1	MULTI-SECPEP	A375_MHC_IP_R2	2	440.3135070800781	3	440.57747	1318.71058	-0.54775	-0.00024132	0.28801	0.00012689	-0.25974	-0.00011443	440.5775673135802	26.9	0.30854	27.56	27.414	27.722	0.65992					13	5	4	0	0	0	0.94163	1	9077	9077		6.1918	0	1	2309500	+		26502	19689	19008	19162	25952	25952					0.0639748295195659
KNLSSTLWHA	10	Unmodified	_KNLSSTLWHA_					0	0	0		PKHD1L1|p.D3401N|1|0.36|ENSG00000205038|chr8:109491959-109491959|G/A|missense_variant	PKHD1L1|p.D3401N|1|0.36|ENSG00000205038|chr8:109491959-109491959|G/A|missense_variant	PKHD1L1|p.D3401N|1|0.36|ENSG00000205038|chr8:109491959-109491959|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	386.5857849121094	3	386.208495	1155.60366	0.30827	0.00011906	0.63846	0.00024658	0.94673	0.00036563	386.20850231332986	31.685	0.45662	31.685	31.465	31.921	0					19	8	3	0	0	0	0.70312	1	10217	10217		10.899	2.6125	1	6541100			26503	15188	19009	19163	25953	25953					0.03207932737564079
KNLTLEDLIRR	11	Unmodified	_KNLTLEDLIRR_					0	0	0			REV__CON__A2AB72	REV__CON__A2AB72	MULTI-MSMS	A375_MHC_IP_R1	1	458.0079345703125	3	457.608659	1369.80415	-0.48922	-0.00022387	-0.59521	-0.00027237	-1.0844	-0.00049624	457.60830094972243	132.4	2.489	132.4	131.83	134.32	0					165	48	5	0	0	0	0.73891	1	51397	51397		0.40827	0	1	169830000	+	+	26504	15836	19010	19164	25954	25954					0.13403782334330572
KNLYRNVML	9	Unmodified	_KNLYRNVML_					0	0	0		ENSG00000149054|ENST00000278319|ZNF215;nc|ENSG00000149054|Q9UL58-2|ZNF215;nc|ENSG00000213967|A6NNF4-2|ZNF726;ENSG00000213967|ENST00000594466|ZNF726	ENSG00000149054|ENST00000278319|ZNF215	ENSG00000149054|ENST00000278319|ZNF215	MSMS	A375_MHC_IP_R2	2	575.619140625	2	575.823701	1149.63285	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.036	1	29.735	29.235	30.235	0.69872								0	0	0	0.1499	1	10102	10102		21.747	4.6338	1				26505	5779	19011	19165	25955	25955					0.06401753762202134
KNLYSLEAQAP	11	Unmodified	_KNLYSLEAQAP_					0	0	0			REV__nc|ENSG00000095203|Q9H329-2|EPB41L4B	REV__nc|ENSG00000095203|Q9H329-2|EPB41L4B	MSMS	A375_MHC_IP_R1	1	411.9424743652344	3	411.88731	1232.6401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.899	1	19.899	19.399	20.399	0								0	0	0	0.162	1	5030	5030		8.2864	4.4405	1		+		26506	16989	19012	19166	25956	25956					0.033087648436321615
KNMTKVEKWCI	11	Unmodified	_KNMTKVEKWCI_					0	0	0			REV__ENST00000418559.5_1_2:183605037-183617329:+|nuORF	REV__ENST00000418559.5_1_2:183605037-183617329:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	460.6474609375	3	460.577314	1378.71011	-0.2324	-0.00010704	-0.84702	-0.00039012	-1.0794	-0.00049716	460.5769434375083	43.767	0.4538	44.536	44.278	44.732	0.76909					15	8	2	0	0	0	0.73439	1	16269	16269		4.7159	1.1232	1	6482500	+		26507	24558	19013	19167	25957	25957					0.0359060391622279
KNNFILHL	8	Unmodified	_KNNFILHL_					0	0	0			REV__ENSG00000142661|ENST00000374434|MYOM3	REV__ENSG00000142661|ENST00000374434|MYOM3	MULTI-SECPEP	A375_MHC_IP_R1	1	500.1922912597656	2	499.792727	997.5709	-0.51159	-0.00025569	0.13098	6.5464E-05	-0.38061	-0.00019023	499.79250681903955	80.372	0.70949	80.372	80.086	80.795	0					22	13	3	0	0	0	0.78043	1	29361	29361		18.135	0	1	1879000	+		26508	19318	19014	19168	25958	25958					0.07201770405367824
KNPFLAAV	8	Unmodified	_KNPFLAAV_					0	0	0		ENSG00000127948|ENST00000461988|POR;POR|p.I444Sfs*101|1|0.39|ENSG00000127948|chr7:75985133-75985133|C/-|frameshift_variant;ENST00000487247.5_1_7:75612754-75613000:+|nuORF;ENST00000412064.6_1_7:75609789-75615495:+|nuORF	ENSG00000127948|ENST00000461988|POR	ENSG00000127948|ENST00000461988|POR	MULTI-SECPEP	A375_MHC_IP_R2	2	429.65814208984375	2	430.255446	858.496338	-0.17322	-7.453E-05	0.18229	7.8432E-05	0.0090687	3.9019E-06	430.2554524099196	46.015	0.40345	46.78	46.503	46.906	0.76519					11	7	2	0	0	0	0.96296	1	17114	17114		5.7604	3.4577	1	1496800			26509	4112	19015	19169	25959	25959					0.06143007593993843
KNPRKARVTRR	11	Unmodified	_KNPRKARVTRR_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MSMS	A375_MHC_IP_R2	2	691.4298095703125	2	691.434193	1380.85383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.25	1	125.54	125.04	126.04	0.2951								0	0	0	0.16334	1	48755	48755		1.3295	0	1				26510	1942	19016	19170	25960	25960					0.17863954853669384
KNPVTGNY	8	Unmodified	_KNPVTGNY_					0	0	0		ENSG00000162409|ENST00000371244|PRKAA2;PRKAA2|p.R442K|2|0.19|ENSG00000162409|chr1:56706123-56706123|G/A|missense_variant;PRKAA2|p.M453I|1|0.31|ENSG00000162409|chr1:56706157-56706157|G/A|missense_variant	ENSG00000162409|ENST00000371244|PRKAA2	ENSG00000162409|ENST00000371244|PRKAA2	MULTI-SECPEP	A375_MHC_IP_R2	2	447.1604919433594	2	446.729792	891.445031	-0.3781	-0.00016891	1.6399	0.00073261	1.2618	0.0005637	446.7298157998983	74.297	0.20384	75.035	74.907	75.111	0.73752					5	3	2	0	0	0	0.972	1	28158	28158		7.2892	0	1	395950			26511	6529	19017	19171	25961	25961					-0.005033611707176533
KNQELARVRQR	11	Unmodified	_KNQELARVRQR_					0	0	0		ENSG00000143847|ENST00000295706|PPFIA4	ENSG00000143847|ENST00000295706|PPFIA4	ENSG00000143847|ENST00000295706|PPFIA4	MULTI-SECPEP	A375_MHC_IP_R1	1	699.57275390625	2	699.40784	1396.80113	-0.9657	-0.00067542	0.90091	0.0006301	-0.064787	-4.5312E-05	699.4082630629221	143.11	1.3497	143.11	142.24	143.58	0					45	26	3	0	0	0	1.0013	1	54646	54646		2.4985	2.0978	1	1590100			26512	5441	19018	19172	25962	25962					0.11859952000213525
KNQKAANPYV	10	Unmodified	_KNQKAANPYV_					0	0	0		TSHZ1|p.D382N|1|0.2|ENSG00000179981|chr18:75286551-75286551|G/A|missense_variant	TSHZ1|p.D382N|1|0.2|ENSG00000179981|chr18:75286551-75286551|G/A|missense_variant	TSHZ1|p.D382N|1|0.2|ENSG00000179981|chr18:75286551-75286551|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	378.2646484375	3	378.208495	1131.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.981	1	28.66	28.16	29.16	0.67857								0	0	0	0.15475	1	9622	9622		5.4027	0	1				26513	30084	19019	19173	25963	25963					0.043119327375507055
KNQRFFVL	8	Unmodified	_KNQRFFVL_					0	0	0		ENSG00000153786|ENST00000313732|ZDHHC7;nc|ENSG00000153786|Q9NXF8-2|ZDHHC7	ENSG00000153786|ENST00000313732|ZDHHC7	ENSG00000153786|ENST00000313732|ZDHHC7	MULTI-MSMS	A375_MHC_IP_R1	1	526.2083740234375	2	526.306001	1050.59745	-0.70766	-0.00037245	0.021251	1.1185E-05	-0.68641	-0.00036126	526.3060807251771	66.692	0.71341	66.692	66.377	67.091	0					21	13	2	0	0	0	0.77583	1	24237	24237		13.508	3.434	1	2760700			26514	6041	19020	19174	25964	25964					0.07417459296698325
KNRFHDRSRKR	11	Unmodified	_KNRFHDRSRKR_					0	0	0			REV__nc|ENSG00000184281|Q9Y5U2-2|TSSC4	REV__nc|ENSG00000184281|Q9Y5U2-2|TSSC4	MULTI-MSMS	A375_MHC_IP_R2	2	501.0181579589844	3	500.618663	1498.83416	-0.46607	-0.00023332	0.42833	0.00021443	-0.037741	-1.8894E-05	500.61859427630947	134.82	1.2699	134.96	134.39	135.66	0.13901					53	24	4	0	0	0	0.73924	1	53024	53024		0.094841	0	1	4766600	+		26515	21805	19021	19175	25965	25965					0.10469578842912597
KNRHPNFL	8	Unmodified	_KNRHPNFL_					0	0	0		ENSG00000128524|ENST00000249289|ATP6V1F;nc|ENSG00000128524|Q16864-2|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	MULTI-MSMS	A375_MHC_IP_R2	2	514.8253173828125	2	513.2856	1024.55665	-0.62409	-0.00032034	2.0944	0.001075	1.4703	0.0007547	513.2869438491605	98.975	1.6272	99.735	98.995	100.62	0.75977					86	31	5	0	0	0	0.77123	1	37610	37610		14.582	2.0501	1	77979000			26516	4142	19022	19176	25966	25966					0.045351179770932504
KNRMHIRRKRI	11	Unmodified	_KNRMHIRRKRI_					0	0	0		ENSG00000205403|ENST00000394634|CFI	ENSG00000205403|ENST00000394634|CFI	ENSG00000205403|ENST00000394634|CFI	MSMS	A375_MHC_IP_R2	2	754.4345092773438	2	754.46497	1506.91539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.69	1	124.02	123.52	124.52	0.32969								0	0	0	0.16334	1	47626	47626		1.3295	0	1				26517	9512	19023	19177	25967	25967					0.18220563281306568
KNRRAKWRKRE	11	Unmodified	_KNRRAKWRKRE_					0	0	0		ENST00000607868.1_1_4:111539283-111539958:-|nuORF;nc|ENSG00000164093|Q99697-3|PITX2;ENSG00000107859|ENST00000370002|PITX3;ENSG00000069011|ENST00000265340|PITX1;nc|ENSG00000164093|Q99697|PITX2;ENSG00000164093|ENST00000644743|PITX2	ENST00000607868.1_1_4:111539283-111539958:-|nuORF	ENST00000607868.1_1_4:111539283-111539958:-|nuORF	MSMS	A375_MHC_IP_R2	2	764.4314575195312	2	764.458199	1526.90185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.32	1	117.98	117.48	118.48	0.65962								0	0	0	0.16334	1	44385	44385		1.3295	0.9789	1				26518	1470	19024	19178	25968	25968					0.15947028773734928
KNRRQKHI	8	Unmodified	_KNRRQKHI_					0	0	0			REV__L1P2_dup1208|chr11:88107546-88109129:-|1.8698902225432863|0.3715451182625647|2.33|469.0|21|2|sense	REV__L1P2_dup1208|chr11:88107546-88109129:-|1.8698902225432863|0.3715451182625647|2.33|469.0|21|2|sense	MSMS	A375_MHC_IP_R2	2	540.72900390625	2	540.330873	1078.64719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.22	1	141.26	140.76	141.76	0.04216								0	0	0	0.16876	1	55244	55244		0.69038	0	1		+		26519	26888	19025	19179	25969	25969					0.1110158702535955
KNWKTDLL	8	Unmodified	_KNWKTDLL_					0	0	0			REV__nc|ENSG00000157077|O95405-2|ZFYVE9	REV__nc|ENSG00000157077|O95405-2|ZFYVE9	MULTI-MSMS	A375_MHC_IP_R2	2	509.2157897949219	2	509.290017	1016.56548	-0.70332	-0.00035819	-0.33396	-0.00017008	-1.0373	-0.00052827	509.28992982230596	63.019	1.9791	63.762	63.333	65.312	0.74263					62	38	3	0	0	0	0.7338	1	24304	24304		24.674	2.9272	1	12190000	+		26520	20009	19026	19180	25970	25970					0.05786046822890967
KNWKTDLLT	9	Unmodified	_KNWKTDLLT_					0	0	0			REV__nc|ENSG00000157077|O95405-2|ZFYVE9	REV__nc|ENSG00000157077|O95405-2|ZFYVE9	MULTI-SECPEP	A375_MHC_IP_R1	1	372.9296875	3	373.544996	1117.61316	0.53711	0.00020064	1.8304	0.00068372	2.3675	0.00088436	373.5458129522138	42.764	0.40509	42.764	42.537	42.942	0					16	7	3	0	0	0	0.8028	1	14784	14784		0.20686	0.20686	1	2385000	+		26521	20009	19027	19181	25971	25971					0.05905701023084475
KNYCDPQGH	9	Unmodified	_KNYCDPQGH_					0	0	0		ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	MULTI-MSMS	A375_MHC_IP_R2	2	354.88671875	3	354.487153	1060.43963	-0.51753	-0.00018346	-0.54135	-0.0001919	-1.0589	-0.00037536	354.4869235145066	60.796	0.40547	61.541	61.263	61.668	0.74503					11	7	2	0	0	0	0.72507	1	23061	23061		2.7352	1.0826	1	1869200			26522	2496	19028	19182	25972	25972					-0.0881740802483364
KNYCDPQGH	9	Unmodified	_KNYCDPQGH_					0	0	0		ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	MULTI-MATCH	A375_MHC_IP_R1	1		3	354.487153	1060.43963	-0.077435	-2.745E-05	-0.83482	-0.00029593	-0.91225	-0.00032338	354.48683763900755	61.357	0.25587	61.357	61.227	61.483	0	-0.092213	-0.0002064	NaN	2.7352	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1489300			26523	2496	19028	19182							-0.0881740802483364
KPAGTTGK	8	Unmodified	_KPAGTTGK_					0	0	0			REV__nc|ENSG00000173124|Q6P461-2|ACSM6	REV__nc|ENSG00000173124|Q6P461-2|ACSM6	MULTI-MSMS	A375_MHC_IP_R2	2	380.6210632324219	2	380.221603	758.428653	-0.0096486	-3.6686E-06	-1.309	-0.0004977	-1.3186	-0.00050137	380.2210202927972	129.52	0.45459	129.76	129.62	130.07	0.23946					13	8	2	0	0	0	0.7781	1	50916	50916		1.8442	0	1	5451400	+		26524	21196	19029	19183	25973	25973					0.03977557663176867
KPAPRSHNW	9	Unmodified	_KPAPRSHNW_					0	0	0		ENSG00000061656|ENST00000374273|SPAG4	ENSG00000061656|ENST00000374273|SPAG4	ENSG00000061656|ENST00000374273|SPAG4	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6712036132812	2	546.788507	1091.56246	-0.82418	-0.00045065	-2.3316	-0.0012749	-3.1558	-0.0017256	546.7874659041172	23.713	0.20315	23.713	23.584	23.787	0					7	3	3	0	0	0	0.56537	1	6548	6548		22.736	0	1	1658900			26525	1320	19030	19184	25974	25974					0.020342164887551917
KPARRLPLK	9	Unmodified	_KPARRLPLK_					0	0	0			REV__nc|ENSG00000240021|Q5T0J7-4|TEX35	REV__nc|ENSG00000240021|Q5T0J7-4|TEX35	MULTI-SECPEP	A375_MHC_IP_R2	2	1079.32763671875	1	1078.72076	1077.71348	0.25147	0.00027127	-2.1123	-0.0022786	-1.8609	-0.0020074	1078.720003390928	116.17	1.477	116.83	115.6	117.07	0.65961					33	28	2	0	0	0	0.81363	1	43745	43745		1.8442	0	1	23007000	+		26526	22776	19031	19185	25975	25975					0.17773402867396726
KPARRLPLK	9	Unmodified	_KPARRLPLK_					0	0	0			REV__nc|ENSG00000240021|Q5T0J7-4|TEX35	REV__nc|ENSG00000240021|Q5T0J7-4|TEX35	MULTI-MATCH	A375_MHC_IP_R1	1		1	1078.72076	1077.71348	0.43073	0.00046464	-2.6618	-0.0028713	-2.231	-0.0024067	1080.7206927547745	116.54	1.4231	116.54	115.48	116.9	0	-0.14241	-0.00017473	NaN	1.8442	66	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17907000	+		26527	22776	19031	19185							0.17773402867396726
KPARRRKRRK	10	Unmodified	_KPARRRKRRK_					0	0	0		SFMBT2|p.S697F|1|0.24|ENSG00000198879|chr10:7172556-7172556|G/A|missense_variant;ENSG00000198879|ENST00000397167|SFMBT2	SFMBT2|p.S697F|1|0.24|ENSG00000198879|chr10:7172556-7172556|G/A|missense_variant	SFMBT2|p.S697F|1|0.24|ENSG00000198879|chr10:7172556-7172556|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	676.1864624023438	2	676.45272	1350.89089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.25	1	119.25	118.75	119.75	0								0	0	0	0.15629	1	44040	44040		0.40072	0.050084	1				26528	9358	19032	19186	25976	25976					0.22947671190081564
KPAVRNQIIR	10	Unmodified	_KPAVRNQIIR_					0	0	0		ENST00000519737.1_1_8:29885475-29885718:+|nuORF	ENST00000519737.1_1_8:29885475-29885718:+|nuORF	ENST00000519737.1_1_8:29885475-29885718:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	598.274169921875	2	597.875114	1193.73567	-0.72939	-0.00043608	-0.58531	-0.00034994	-1.3147	-0.00078603	597.8746030715217	138.89	0.60522	138.89	138.76	139.37	0					26	11	4	0	0	0	0.95024	1	53410	53410		1.6526	0	1	4378300			26529	12984	19033	19187	25977	25977					0.14655582545174184
KPEDEELYY	9	Unmodified	_KPEDEELYY_					0	0	0			REV__tr|U7SFT1|U7SFT1_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02223PE=3SV=1	REV__tr|U7SFT1|U7SFT1_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02223PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	593.6703491210938	2	593.269144	1184.52373	-0.059416	-3.525E-05	1.7882	0.0010609	1.7288	0.0010256	593.2699870473542	21.83	0.50742	21.83	21.606	22.113	0					16	9	3	0	0	0	0.6324	1	5799	5799		13.042	2.2185	1	1498800	+		26530	28171	19034	19188	25978	25978					-0.06114598446970376
KPEGKAIIDEF	11	Unmodified	_KPEGKAIIDEF_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-SECPEP	A375_MHC_IP_R1	1	415.59527587890625	3	416.227444	1245.6605	0.54697	0.00022766	2.6746	0.0011132	3.2216	0.0013409	416.5628847271865	38.816	0.45665	38.816	38.526	38.983	0					32	8	6	0	0	0	0.9847	1	13255	13255		14.171	5.7264	1	5287600			26531	976	19035	19189	25979	25979					0.04749935503400593
KPELIICLEAR	11	Unmodified	_KPELIICLEAR_					0	0	0		nc|ENSG00000197472|Q8IW36-3|ZNF695;nc|ENSG00000197472|Q8IW36-2|ZNF695;nc|ENSG00000197472|Q8IW36-1|ZNF695;ENSG00000197472|ENST00000339986|ZNF695	nc|ENSG00000197472|Q8IW36-3|ZNF695	nc|ENSG00000197472|Q8IW36-3|ZNF695	MSMS	A375_MHC_IP_R1	1	642.9066162109375	2	642.870848	1283.72714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.502	1	74.502	74.002	75.002	0								0	0	0	0.16112	1	27136	27136		12.873	2.722	1				26532	9163	19036	19190	25980	25980					0.096628477936747
KPERNLRPRYY	11	Unmodified	_KPERNLRPRYY_					0	0	0		ENST00000583676.1_2_17:62532828-62538264:+|nuORF	ENST00000583676.1_2_17:62532828-62538264:+|nuORF	ENST00000583676.1_2_17:62532828-62538264:+|nuORF	MSMS	A375_MHC_IP_R2	2	746.3101196289062	2	746.412592	1490.81063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.17	1	124.5	124	125	0.32969								0	0	0	0.16223	1	47932	47932		7.1017	2.2047	1				26533	13698	19037	19191	25981	25981					0.08485720285762
KPEVAWFLEGT	11	Unmodified	_KPEVAWFLEGT_					0	0	0		nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;nc|ENSG00000065534|Q15746-5|MYLK	nc|ENSG00000065534|Q15746-3|MYLK	nc|ENSG00000065534|Q15746-3|MYLK	MSMS	A375_MHC_IP_R2	2	638.8294067382812	2	638.832246	1275.64994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.05	1	120.59	120.09	121.09	0.5321								0	0	0	0.16164	1	45767	45767		10.151	1.4052	1				26534	1387	19038	19192	25982	25982					0.023139528489764416
KPFDVLLRR	9	Unmodified	_KPFDVLLRR_					0	0	0			REV__NR3C1|p.E94Nfs*7|1|0.08|ENSG00000113580|chr5:143400559-143400560|TC/-|frameshift_variant	REV__NR3C1|p.E94Nfs*7|1|0.08|ENSG00000113580|chr5:143400559-143400560|TC/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	381.6022644042969	3	381.904747	1142.69241	-0.41683	-0.00015919	-0.42518	-0.00016238	-0.84201	-0.00032157	381.90463365634935	22.835	0.35777	23.465	23.265	23.623	0.63014					9	6	2	0	0	0	0.7911	1	7202	7202		2.2828	0.80087	1	1760700	+		26535	17789	19039	19193	25983	25983					0.12677392767909623
KPGCLKVM	8	Unmodified	_KPGCLKVM_					0	0	0		nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	MULTI-SECPEP	A375_MHC_IP_R1	1	437.6570739746094	2	438.245709	874.476865	-0.38467	-0.00016858	-0.23477	-0.00010288	-0.61944	-0.00027146	438.2451271307933	133.03	0.35785	133.03	132.79	133.15	0					9	6	2	0	0	0	0.972	1	51298	51298		2.0598	0	1	777210			26536	1669	19040	19194	25984	25984					0.03460591987220596
KPGCVFSC	8	Unmodified	_KPGCVFSC_					0	0	0		ENSG00000121904|ENST00000373381|CSMD2;nc|ENSG00000121904|Q7Z408|CSMD2	ENSG00000121904|ENST00000373381|CSMD2	ENSG00000121904|ENST00000373381|CSMD2	MSMS	A375_MHC_IP_R2	2	420.689208984375	2	420.690767	839.36698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.986	1	29.685	29.185	30.185	0.69872								0	0	0	0.16876	1	10081	10081		2.3027	0	1				26537	3748	19041	19195	25985	25985					-0.05912833351965219
KPGKPGRDG	9	Unmodified	_KPGKPGRDG_					0	0	0			REV__ENSG00000134871|ENST00000360467|COL4A2	REV__ENSG00000134871|ENST00000360467|COL4A2	MULTI-MSMS	A375_MHC_IP_R1	1	456.6581115722656	2	456.256508	910.498464	0.21676	9.8897E-05	-0.076477	-3.4893E-05	0.14028	6.4004E-05	456.25641195920525	114.31	2.9993	114.31	113.29	116.29	0					132	58	3	0	0	0	0.73415	2	42044	42044;42457		3.9444	0	1	35965000	+		26538	18808	19042	19196	25986;25987	25986					0.039634363317986754
KPGKPGRDG	9	Unmodified	_KPGKPGRDG_					0	0	0			REV__ENSG00000134871|ENST00000360467|COL4A2	REV__ENSG00000134871|ENST00000360467|COL4A2	MULTI-MSMS	A375_MHC_IP_R2	2	456.65667724609375	2	456.256508	910.498464	-0.040184	-1.8334E-05	-0.12445	-5.6781E-05	-0.16463	-7.5115E-05	456.2563881595968	113.64	3.0478	114.35	113.46	116.51	0.70985					137	59	4	0	0	0	0.73415	2	43281	43281;43488		3.9444	0	1	31151000	+		26539	18808	19042	19196	25988;25989	25988					0.039634363317986754
KPGLEKGVERA	11	Unmodified	_KPGLEKGVERA_					0	0	0			REV__ENST00000583454.1_1_17:73512940-73513526:+|nuORF	REV__ENST00000583454.1_1_17:73512940-73513526:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	592.7430419921875	2	592.343312	1182.67207	-0.70471	-0.00041743	0.46315	0.00027434	-0.24156	-0.00014309	592.3433393022315	149.67	1.2463	149.67	148.76	150	0					109	47	3	0	0	0	0.73647	2	56949	56949;57133		2.7352	1.2533	1	227150	+		26540	26363	19043	19197	25990;25991	25990					0.08804177317438189
KPGLEKGVERA	11	Unmodified	_KPGLEKGVERA_					0	0	0			REV__ENST00000583454.1_1_17:73512940-73513526:+|nuORF	REV__ENST00000583454.1_1_17:73512940-73513526:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	592.7428588867188	2	592.343312	1182.67207	-0.37548	-0.00022241	0.17852	0.00010574	-0.19696	-0.00011667	592.3432334709694	149.56	0.95453	149.58	149.06	150.01	0.018265					105	46	3	0	0	0	0.73822	1	57948	57948		1.0715	0.46996	1	220700	+		26541	26363	19043	19197	25992	25992					0.08804177317438189
KPGLIELGRI	10	Unmodified	_KPGLIELGRI_					0	0	0			REV__ENSG00000044090|ENST00000265348|CUL7	REV__ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	A375_MHC_IP_R1	1	548.3948974609375	2	548.347866	1094.68118	-0.8941	-0.00049028	0.3214	0.00017624	-0.5727	-0.00031404	548.3480077884558	149.63	2.5729	149.63	147.43	150	0					252	106	4	0	0	0	0.72716	1	56979	56979		0.40072	0	1	1838400	+		26542	16352	19044	19198	25993	25993					0.13762570673748087
KPGLRPRL	8	Unmodified	_KPGLRPRL_					0	0	0		ENSG00000071677|ENST00000165524|PRLH	ENSG00000071677|ENST00000165524|PRLH	ENSG00000071677|ENST00000165524|PRLH	MULTI-SECPEP	A375_MHC_IP_R1	1	469.0284118652344	2	468.808711	935.602869	-0.68047	-0.00031901	3.7643	0.0017647	3.0838	0.0014457	468.80856501618786	149.75	0.64166	149.75	149.36	150	0					63	35	2	0	0	0	0.972	1	57052	57052		0.69038	0	1	61383			26543	1518	19045	19199	25994	25994					0.13249182879178534
KPGPKKKVRMV	11	Unmodified	_KPGPKKKVRMV_					0	0	0		PRDM13|p.E42K|1|0.46|ENSG00000112238|chr6:99607158-99607158|G/A|missense_variant	PRDM13|p.E42K|1|0.46|ENSG00000112238|chr6:99607158-99607158|G/A|missense_variant	PRDM13|p.E42K|1|0.46|ENSG00000112238|chr6:99607158-99607158|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	423.65869140625	3	423.272554	1266.79583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.05	1	142.05	141.55	142.55	0								0	0	0	0.16334	1	54508	54508		0.45452	0	1				26544	15222	19046	19200	25995	25995					0.1731055688401284
KPGSPGPRRLL	11	Unmodified	_KPGSPGPRRLL_					0	0	0		ENST00000453281.5_1_2:219150512-219157202:-|nuORF;ENST00000451181.5_1_2:219150512-219154698:-|nuORF;ENST00000444881.5_1_2:219150512-219151090:-|nuORF;ENST00000440422.5_1_2:219150512-219157252:-|nuORF	ENST00000453281.5_1_2:219150512-219157202:-|nuORF	ENST00000453281.5_1_2:219150512-219157202:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	589.76123046875	2	589.361839	1176.70913	-0.37632	-0.00022179	-0.62567	-0.00036875	-1.002	-0.00059054	589.3613403649846	138.87	1.0018	138.93	138.75	139.75	0.059906					36	19	4	0	0	0	0.73818	1	54435	54435		2.7352	2.3345	1	6632000			26545	11971	19047	19201	25996	25996					0.12783893653841005
KPGSPGPRRLL	11	Unmodified	_KPGSPGPRRLL_					0	0	0		ENST00000453281.5_1_2:219150512-219157202:-|nuORF;ENST00000451181.5_1_2:219150512-219154698:-|nuORF;ENST00000444881.5_1_2:219150512-219151090:-|nuORF;ENST00000440422.5_1_2:219150512-219157252:-|nuORF	ENST00000453281.5_1_2:219150512-219157202:-|nuORF	ENST00000453281.5_1_2:219150512-219157202:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	589.361839	1176.70913	-0.37632	-0.00022179	-0.62567	-0.00036875	-1.002	-0.00059054	589.3613403649846	138.87	1.0018	138.93	138.75	139.75	0.059906	0.0042783	-4.4397E-05	NaN	2.7352	36	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6632000			26546	11971	19047	19201							0.12783893653841005
KPIAVSLRVP	10	Unmodified	_KPIAVSLRVP_					0	0	0			REV__nc|ENSG00000180098|Q9NX07-2|TRNAU1AP	REV__nc|ENSG00000180098|Q9NX07-2|TRNAU1AP	MULTI-SECPEP	A375_MHC_IP_R1	1	360.6290283203125	3	360.569365	1078.68626	-0.23938	-8.6314E-05	-0.89992	-0.00032448	-1.1393	-0.0004108	360.56930132867905	29.73	1.1498	29.73	29.403	30.553	0					47	22	3	0	0	0	0.51493	1	9490	9490		32.898	0	1	21505000	+		26547	21595	19048	19202	25997	25997					0.15006874536379655
KPIAVSLRVP	10	Unmodified	_KPIAVSLRVP_					0	0	0			REV__nc|ENSG00000180098|Q9NX07-2|TRNAU1AP	REV__nc|ENSG00000180098|Q9NX07-2|TRNAU1AP	MULTI-MSMS	A375_MHC_IP_R2	2	360.6289978027344	3	360.569365	1078.68626	-0.94037	-0.00033907	-1.921	-0.00069265	-2.8614	-0.0010317	360.9029009328853	28.9	1.2512	29.598	29.183	30.434	0.69872					62	24	3	0	0	0	0.6502	1	10381	10381		19.626	6.0111	1	14456000	+		26548	21595	19048	19202	25998	25998					0.15006874536379655
KPIKKGKKRN	10	Unmodified	_KPIKKGKKRN_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	A375_MHC_IP_R1	1	1197.3961181640625	1	1196.79499	1195.78771	0.11467	0.00013723	-0.25324	-0.00030308	-0.13857	-0.00016584	1197.7959210182644	117.94	0.15204	117.94	117.87	118.02	0					4	2	2	0	0	0	0.72416	1	43388	43388		1.4819	0.28856	1	7108100			26549	4347	19049	19203	25999	25999					0.19764745958923413
KPIKVKRKKKK	11	Unmodified	_KPIKVKRKKKK_					0	0	0		ENSG00000196663|ENST00000359520|TECPR2;nc|ENSG00000196663|O15040-2|TECPR2	ENSG00000196663|ENST00000359520|TECPR2	ENSG00000196663|ENST00000359520|TECPR2	MSMS	A375_MHC_IP_R2	2	690.9916381835938	2	690.998106	1379.98166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.48	1	109.24	108.74	109.74	0.75436								0	0	0	0.16358	1	40962	40962		0.30703	0.30703	1				26550	9072	19050	19204	26000	26000					0.30686702394996246
KPIKVKRKKKK	11	Unmodified	_KPIKVKRKKKK_					0	0	0		ENSG00000196663|ENST00000359520|TECPR2;nc|ENSG00000196663|O15040-2|TECPR2	ENSG00000196663|ENST00000359520|TECPR2	ENSG00000196663|ENST00000359520|TECPR2	MSMS	A375_MHC_IP_R2	2	690.9921875	2	690.998106	1379.98166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.51	1	109.26	108.76	109.76	0.75221								0	0	0	0.16358	1	40970	40970		0.30703	0.30703	1				26551	9072	19050	19204	26001	26001					0.30686702394996246
KPIPITLPL	9	Unmodified	_KPIPITLPL_					0	0	0			REV__ITPRIPL1|p.N498D|1|0.41|ENSG00000198885|chr2:96328123-96328123|A/G|missense_variant	REV__ITPRIPL1|p.N498D|1|0.41|ENSG00000198885|chr2:96328123-96328123|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	991.8921508789062	1	991.65503	990.647754	0.22573	0.00022385	2.5796	0.0025581	2.8054	0.002782	991.6570549482661	113.35	0.30879	114.06	113.87	114.18	0.70985					7	5	2	0	0	0	0.75764	1	42668	42668		1.8442	0	1	2590900	+		26552	22439	19051	19205	26002	26002					0.15205568901853894
KPIPPPVKK	9	Unmodified	_KPIPPPVKK_					0	0	0			REV__ENSG00000116544|ENST00000373347|DLGAP3	REV__ENSG00000116544|ENST00000373347|DLGAP3	MULTI-SECPEP	A375_MHC_IP_R2	2	1003.483154296875	1	1003.66626	1002.65899	0.093676	9.4019E-05	-1.3347	-0.0013396	-1.241	-0.0012455	1003.6637582577761	118.9	1.2192	119.51	118.69	119.91	0.60909					40	23	3	0	0	0	0.80516	1	44835	44835		3.9444	1.0552	1	112980000	+		26553	17958	19052	19206	26003	26003					0.1577639099599537
KPIVRSDP	8	Unmodified	_KPIVRSDP_					0	0	0			REV__CYP4F3|p.G411S|2|0.29|ENSG00000186529|chr19:15658379-15658379|G/A|missense_variant	REV__CYP4F3|p.G411S|2|0.29|ENSG00000186529|chr19:15658379-15658379|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	912.3157958984375	1	911.530892	910.523616	-0.36317	-0.00033104	-0.18516	-0.00016878	-0.54833	-0.00049982	911.5318946502804	123.26	1.0116	123.64	123.23	124.24	0.37661					25	19	2	0	0	0	0.972	1	47184	47184		7.9102	6.0659	1	37977000	+		26554	15958	19053	19207	26004	26004					0.06477491134364755
KPKINEPYY	9	Unmodified	_KPKINEPYY_					0	0	0			REV__nc|ENSG00000178031|Q8N6G6-4|ADAMTSL1;REV__ENSG00000178031|ENST00000380548|ADAMTSL1	REV__nc|ENSG00000178031|Q8N6G6-4|ADAMTSL1	MSMS	A375_MHC_IP_R1	1	576.319580078125	2	576.308406	1150.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.034	1	83.034	82.534	83.534	0								0	0	0	0.15486	1	30375	30375		7.9102	0.62092	1		+		26555	27379;21480	19054	19208	26005	26005					0.032982986488150345
KPKMGFYRVTT	11	Unmodified	_KPKMGFYRVTT_					0	0	0			REV__nc|ENSG00000248905|Q68DA7-5|FMN1;REV__ENSG00000248905|ENST00000616417|FMN1	REV__nc|ENSG00000248905|Q68DA7-5|FMN1	MSMS	A375_MHC_IP_R2	2	664.2943725585938	2	664.36319	1326.71183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.77	1	130.99	130.49	131.49	0.2142								0	0	0	0.16258	1	51434	51434		5.2969	0.39987	1		+		26556	27527;15710	19055	19209	26006	26006					0.0615398099646427
KPKPPSKVKS	10	Unmodified	_KPKPPSKVKS_					0	0	0		ENSG00000170322|ENST00000682444|NFRKB;nc|ENSG00000170322|Q6P4R8-2|NFRKB	ENSG00000170322|ENST00000682444|NFRKB	ENSG00000170322|ENST00000682444|NFRKB	MULTI-MSMS	A375_MHC_IP_R1	1	548.4153442382812	2	548.347866	1094.68118	-0.8941	-0.00049028	0.3214	0.00017624	-0.5727	-0.00031404	548.3480077884558	149.63	2.5729	149.63	147.43	150	0					252	106	4	0	0	0	0.72723	1	56487	56487		0.30703	0.30703	1	1838400			26557	7493	19056	19210	26007	26007					0.13762570673748087
KPKRKQLTKG	10	Unmodified	_KPKRKQLTKG_					0	0	0			REV__nc|ENSG00000187772|Q6ZN17-2|LIN28B	REV__nc|ENSG00000187772|Q6ZN17-2|LIN28B	MSMS	A375_MHC_IP_R2	2	592.3731689453125	2	592.385314	1182.75608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.625	1	83.368	82.868	83.868	0.74293								0	0	0	0.15596	1	31388	31388		1.4819	0.8804	1		+		26558	22045	19057	19211	26008	26008					0.1720075320495198
KPKRKRRKKRG	11	Unmodified	_KPKRKRRKKRG_					0	0	0		nc|ENSG00000079263|Q13342-5|SP140;ENSG00000079263|ENST00000392045|SP140;nc|ENSG00000079263|Q13342-3|SP140;nc|ENSG00000079263|Q13342-6|SP140;ENST00000476126.1_1_2:231134613-231152782:+|nuORF	nc|ENSG00000079263|Q13342-5|SP140	nc|ENSG00000079263|Q13342-5|SP140	MSMS	A375_MHC_IP_R2	2	719.4866333007812	2	719.489302	1436.96405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.13	1	120.66	120.16	121.16	0.5321								0	0	0	0.16354	1	45801	45801		0.30703	0	1				26559	1691	19058	19212	26009	26009					0.2630479991271386
KPKRLRRY	8	Unmodified	_KPKRLRRY_					0	0	0			REV__nc|ENSG00000122224|Q9HBG7-2|LY9	REV__nc|ENSG00000122224|Q9HBG7-2|LY9	MULTI-SECPEP	A375_MHC_IP_R1	1	559.0948486328125	2	558.859267	1115.70398	-0.58582	-0.00032739	-3.6114	-0.0020182	-4.1972	-0.0023456	558.8564600054369	83.683	0.20278	83.683	83.583	83.786	0					5	3	2	0	0	0	0.972	1	30605	30605		5.2307	0.47466	1	1073500	+		26560	18196	19059	19213	26010	26010					0.15075634581899067
KPKRRRAAD	9	Unmodified	_KPKRRRAAD_					0	0	0		nc|ENSG00000169246|Q92617-5|NPIPB3;ENSG00000169203|ENST00000550665|NPIPB12;nc|ENSG00000169246|Q92617-6|NPIPB3;nc|ENSG00000169246|Q92617|NPIPB3;ENSG00000243716|ENST00000424340|NPIPB5;nc|ENSG00000243716|C9JG80|NPIPB4;ENSG00000198064|ENST00000697092|NPIPB13;ENSG00000185864|ENST00000682606|NPIPB4;ENSG00000169246|ENST00000542817|NPIPB3;nc|ENSG00000169246|Q92617-2|NPIPB3;nc|ENSG00000169246|Q92617-3|NPIPB3;ENSG00000254206|ENST00000698511|NPIPB11	nc|ENSG00000169246|Q92617-5|NPIPB3	nc|ENSG00000169246|Q92617-5|NPIPB3	MSMS	A375_MHC_IP_R2	2	366.6172790527344	3	366.559863	1096.65776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.044	1	19.648	19.148	20.148	0.60308								0	0	0	0.15486	1	5791	5791		2.4985	0.21571	1				26561	7389	19060	19214	26011	26011					0.1132956967978771
KPKVEVLRS	9	Unmodified	_KPKVEVLRS_					0	0	0		ENST00000310942.8_1_17:77759703-77759895:+|nuORF	ENST00000310942.8_1_17:77759703-77759895:+|nuORF	ENST00000310942.8_1_17:77759703-77759895:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	351.9695129394531	3	352.557236	1054.64988	-0.30853	-0.00010877	-0.15652	-5.5181E-05	-0.46504	-0.00016395	352.5571613659196	28.062	0.35142	28.062	27.836	28.188	0					9	5	2	0	0	0	0.65527	1	8528	8528		16.566	2.1605	1	2694100			26562	10624	19061	19215	26012	26012					0.12473997639654044
KPKWFLWHWKE	11	Unmodified	_KPKWFLWHWKE_					0	0	0			REV__ENST00000554703.1_1_14:57857320-57876115:+|nuORF	REV__ENST00000554703.1_1_14:57857320-57876115:+|nuORF	MSMS	A375_MHC_IP_R1	1	793.387451171875	2	792.927346	1583.84014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.3	1	123.3	122.8	123.8	0								0	0	0	0.16339	1	46062	46062		1.0715	0.72083	1		+		26563	26083	19062	19216	26013	26013					0.0715728430186573
KPLDLLLL	8	Unmodified	_KPLDLLLL_					0	0	0			REV__TJP1|p.F486L|1|0.29|ENSG00000104067|chr15:29734332-29734332|G/T|missense_variant	REV__TJP1|p.F486L|1|0.29|ENSG00000104067|chr15:29734332-29734332|G/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	925.6322021484375	1	924.612831	923.605554	-0.19622	-0.00018143	0.7347	0.00067931	0.53848	0.00049789	924.6140130976315	117.98	0.50536	118.59	118.49	119	0.60909					13	9	2	0	0	0	0.77797	1	44847	44847		2.3027	0	1	12771000	+		26564	28115	19063	19217	26014	26014					0.14069593493491084
KPLFDALLR	9	Unmodified	_KPLFDALLR_					0	0	0		ENSG00000143669|ENST00000389793|LYST;nc|ENSG00000143669|Q99698-3|LYST;ENST00000465349.5_1_1:235954948-235996891:-|nuORF;nc|ENSG00000143669|Q99698-2|LYST;ENST00000489585.5_1_1:235926109-235996891:-|nuORF	ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	MULTI-MSMS	A375_MHC_IP_R1	1	358.62200927734375	3	358.221965	1071.64407	0.033938	1.2157E-05	0.072151	2.5846E-05	0.10609	3.8003E-05	358.2220013427665	83.418	0.76245	83.418	83.175	83.937	0					18	14	2	0	0	0	0.71784	1	30569	30569		5.4027	0.35519	1	1679800			26565	5423	19064	19218	26015	26015					0.11110899127970697
KPLFDALLR	9	Unmodified	_KPLFDALLR_					0	0	0		ENSG00000143669|ENST00000389793|LYST;nc|ENSG00000143669|Q99698-3|LYST;ENST00000465349.5_1_1:235954948-235996891:-|nuORF;nc|ENSG00000143669|Q99698-2|LYST;ENST00000489585.5_1_1:235926109-235996891:-|nuORF	ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	MULTI-MSMS	A375_MHC_IP_R2	2	358.6216735839844	3	358.221965	1071.64407	-0.23091	-8.2716E-05	-0.1455	-5.2121E-05	-0.3764	-0.00013484	358.22185715709867	82.361	0.55699	83.104	82.94	83.497	0.74294					18	10	2	0	0	0	0.6421	1	31325	31325		12.175	0.65687	1	1568600			26566	5423	19064	19218	26016	26016					0.11110899127970697
KPLFKRKRLH	10	Unmodified	_KPLFKRKRLH_					0	0	0			REV__ENST00000342992.10_3_2:179540701-179542581:-|nuORF	REV__ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	A375_MHC_IP_R2	2	661.9285278320312	2	661.930223	1321.84589	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.9	1	119.51	119.01	120.01	0.60909								0	0	0	0.15531	1	45212	45212		3.5965	2.267	1		+		26567	23747	19065	19219	26017	26017					0.19784427604213306
KPLHYASV	8	Unmodified	_KPLHYASV_					0	0	0		ENSG00000165762|ENST00000641885|OR4K2	ENSG00000165762|ENST00000641885|OR4K2	ENSG00000165762|ENST00000641885|OR4K2	MULTI-MSMS	A375_MHC_IP_R2	2	458.32470703125	2	457.758352	913.502152	-0.94086	-0.00043069	0.53281	0.0002439	-0.40805	-0.00018679	457.75845888146597	29.53	0.91074	30.229	30.032	30.942	0.69872					32	17	3	0	0	0	0.77515	1	10453	10453		12.532	1.4171	1	11679000			26568	6990	19066	19220	26018	26018					0.04194106105660467
KPLIGLFVL	9	Unmodified	_KPLIGLFVL_					0	0	0			REV__ZNF836|p.G392Efs*43|1|0.12|ENSG00000196267|chr19:52156508-52156508|C/-|frameshift_variant	REV__ZNF836|p.G392Efs*43|1|0.12|ENSG00000196267|chr19:52156508-52156508|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	1000.8982543945312	1	999.660116	998.652839	0.20581	0.00020574	4.4544	0.0044529	4.6602	0.0046586	1000.666323981954	114.8	0.30406	115.49	115.32	115.63	0.68999					6	5	2	0	0	0	0.75764	1	43226	43226		1.8442	0	1	2584900	+		26569	22177	19067	19221	26019	26019					0.15345872764476098
KPLKFKKRA	9	Unmodified	_KPLKFKKRA_					0	0	0			REV__ENSG00000150628|ENST00000280191|SPATA4	REV__ENSG00000150628|ENST00000280191|SPATA4	MULTI-SECPEP	A375_MHC_IP_R1	1	1116.1429443359375	1	1115.74116	1114.73388	-0.26221	-0.00029256	1.7499	0.0019524	1.4877	0.0016599	1115.743995550513	138.85	0.50432	138.85	138.71	139.22	0					11	9	2	0	0	0	0.81779	1	53498	53498		0.52476	0	1	1357800	+		26570	19718	19068	19222	26020	26020					0.18110573527224005
KPLKGARIAGC	11	Unmodified	_KPLKGARIAGC_					0	0	0		ENST00000480653.5_1_20:32878355-32891076:-|nuORF;nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY;ENST00000606061.1_1_20:32881868-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	371.92938232421875	3	371.890221	1112.64883	-0.2949	-0.00010967	-0.87403	-0.00032504	-1.1689	-0.00043472	371.88956756414245	29.469	0.60486	30.168	29.88	30.485	0.69872					14	11	2	0	0	0	0.9889	1	10209	10209		4.1166	1.8339	1	1110500			26571	2296	19069	19223	26021	26021					0.0970145999910983
KPLKQTCEY	9	Unmodified	_KPLKQTCEY_					0	0	0		nc|ENSG00000188089|Q3MJ16|PLA2G4E;ENSG00000188089|ENST00000696112|PLA2G4E;nc|ENSG00000188089|Q3MJ16-2|PLA2G4E	nc|ENSG00000188089|Q3MJ16|PLA2G4E	nc|ENSG00000188089|Q3MJ16|PLA2G4E	MULTI-SECPEP	A375_MHC_IP_R2	2	371.3045654296875	3	370.526837	1108.55868	-0.15527	-5.7534E-05	-0.19042	-7.0557E-05	-0.3457	-0.00012809	370.52688560808366	28.509	0.65529	29.188	28.858	29.514	0.67857					16	12	2	0	0	0	0.76827	1	9904	9904		7.1017	0	1	8826900			26572	8882	19070	19224	26022	26022					0.00874365880008554
KPLKVRPFL	9	Unmodified	_KPLKVRPFL_					0	0	0			REV__DNAH7|p.G1558R|1|0.13|ENSG00000118997|chr2:195895200-195895200|C/T|missense_variant	REV__DNAH7|p.G1558R|1|0.13|ENSG00000118997|chr2:195895200-195895200|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	366.6449890136719	3	366.577972	1096.71209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.825	1	48.825	48.325	49.325	0								0	0	0	0.15486	1	17244	17244		7.609	2.3121	1		+		26573	16014	19071	19225	26023	26023					0.16759768778638318
KPLLLALLHS	10	Unmodified	_KPLLLALLHS_					0	0	0			REV__ENSG00000264717|ENST00000576178|NPY4R2	REV__ENSG00000264717|ENST00000576178|NPY4R2	MSMS	A375_MHC_IP_R2	2	552.9220581054688	2	552.860609	1103.70667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.252	1	84.991	84.491	85.491	0.73962								0	0	0	0.15593	1	32026	32026		3.2813	0	1		+		26574	22492	19072	19226	26024	26024					0.15896045196154773
KPLNDNQW	8	Unmodified	_KPLNDNQW_					0	0	0		nc|ENSG00000179915|Q9ULB1|NRXN1;nc|ENSG00000179915|Q9ULB1-2|NRXN1;ENSG00000179915|ENST00000401669|NRXN1;nc|ENSG00000179915|Q9ULB1-3|NRXN1	nc|ENSG00000179915|Q9ULB1|NRXN1	nc|ENSG00000179915|Q9ULB1|NRXN1	MSMS	A375_MHC_IP_R2	2	507.6740417480469	2	507.753798	1013.49304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.483	1	57.234	56.734	57.734	0.75015								0	0	0	0.16876	1	21351	21351		12.532	0.89125	1				26575	8263	19073	19227	26025	26025					-0.013162872506768508
KPLPALKLAL	10	Unmodified	_KPLPALKLAL_					0	0	0		nc|ENSG00000135766|Q9GZT9-3|EGLN1;nc|ENSG00000135766|Q9GZT9-2|EGLN1;ENSG00000135766|ENST00000366641|EGLN1	nc|ENSG00000135766|Q9GZT9-3|EGLN1	nc|ENSG00000135766|Q9GZT9-3|EGLN1	MULTI-SECPEP	A375_MHC_IP_R2	2	532.2186279296875	2	532.365527	1062.7165	-0.67894	-0.00036145	-3.7121	-0.0019762	-4.3911	-0.0023377	532.8644756614458	83.202	0.25189	83.942	83.848	84.099	0.73962					5	4	2	0	0	0	0.94516	1	31630	31630		1.4819	0.79152	1	1589400			26576	4711	19074	19228	26026	26026					0.18765233201543197
KPLPIDAQSG	10	Unmodified	_KPLPIDAQSG_					0	0	0			REV__ENSG00000185567|ENST00000333244|AHNAK2	REV__ENSG00000185567|ENST00000333244|AHNAK2	MULTI-MSMS	A375_MHC_IP_R1	1	513.6965942382812	2	513.284931	1024.55531	-0.20972	-0.00010764	-0.096143	-4.9349E-05	-0.30586	-0.00015699	513.2848666259879	70.008	1.6301	70.008	69.529	71.159	0					98	31	5	0	0	0	0.33265	1	25396	25396		38.176	0	1	83317000	+		26577	21900	19075	19229	26027	26027					0.044014390976599316
KPLPIDAQSG	10	Unmodified	_KPLPIDAQSG_					0	0	0			REV__ENSG00000185567|ENST00000333244|AHNAK2	REV__ENSG00000185567|ENST00000333244|AHNAK2	MULTI-MSMS	A375_MHC_IP_R2	2	513.684326171875	2	513.284931	1024.55531	-0.665	-0.00034133	-0.13652	-7.0076E-05	-0.80152	-0.00041141	513.2848472970924	69.372	1.575	70.106	69.524	71.099	0.73421					97	30	5	0	0	0	0.33265	1	26233	26233		38.176	0	1	74009000	+		26578	21900	19075	19229	26028	26028					0.044014390976599316
KPLTLRQLE	9	Unmodified	_KPLTLRQLE_					0	0	0		nc|ENSG00000068912|Q96DZ1-2|ERLEC1;nc|ENSG00000068912|Q96DZ1-3|ERLEC1;ENSG00000068912|ENST00000185150|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	MULTI-SECPEP	A375_MHC_IP_R2	2	366.6099853515625	3	366.560758	1096.66044	0.27068	9.9222E-05	-0.43763	-0.00016042	-0.16695	-6.1196E-05	366.8948181334835	46.827	0.71098	47.588	47.004	47.715	0.76128					19	13	2	0	0	0	0.79713	1	17444	17444		6.6304	0.43853	1	1393100			26579	1469	19076	19230	26029	26029					0.11597980294095578
KPLVAKPV	8	Unmodified	_KPLVAKPV_					0	0	0			REV__ENSG00000166428|ENST00000392593|PLD4	REV__ENSG00000166428|ENST00000392593|PLD4	MULTI-MSMS	A375_MHC_IP_R2	2	851.755615234375	1	851.5713	850.564024	-0.53803	-0.00045817	0.96144	0.00081873	0.4234	0.00036056	851.569285945658	117.43	0.30095	118.09	117.84	118.14	0.65961					6	5	2	0	0	0	0.77717	1	44418	44418		5.2307	2.6532	1	2673800	+		26580	20677	19077	19231	26030	26030					0.13276457524796115
KPLVPGPTKR	10	Unmodified	_KPLVPGPTKR_					0	0	0			REV__nc|ENSG00000197381|P78563-5|ADARB1	REV__nc|ENSG00000197381|P78563-5|ADARB1	MSMS	A375_MHC_IP_R2	2	364.9390869140625	3	364.901114	1091.68151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.121	1	29.819	29.319	30.319	0.69872								0	0	0	0.15382	1	10143	10143		8.4443	0.28878	1		+		26581	27441	19078	19232	26031	26031					0.13933990393616114
KPLVRKLVH	9	Unmodified	_KPLVRKLVH_					0	0	0		DYNC1LI2|p.P344L|1|0.36|ENSG00000135720|chr16:66730122-66730122|G/A|missense_variant	DYNC1LI2|p.P344L|1|0.36|ENSG00000135720|chr16:66730122-66730122|G/A|missense_variant	DYNC1LI2|p.P344L|1|0.36|ENSG00000135720|chr16:66730122-66730122|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	1090.49169921875	1	1089.72551	1088.71823	0.18705	0.00020384	-3.3895	-0.0036936	-3.2024	-0.0034897	1090.7240010886862	118.39	0.20309	118.99	118.85	119.05	0.60909					5	3	2	0	0	0	0.8028	1	44877	44877		4.3292	1.44	1	4865600			26582	811	19079	19233	26032	26032					0.17742287010196378
KPNNLFCDL	9	Unmodified	_KPNNLFCDL_					0	0	0			REV__CAMTA1|p.P485L|1|0.35|ENSG00000171735|chr1:7664001-7664001|C/T|missense_variant	REV__CAMTA1|p.P485L|1|0.35|ENSG00000171735|chr1:7664001-7664001|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	354.9718322753906	3	355.179548	1062.51682	-0.52384	-0.00018606	-0.077888	-2.7664E-05	-0.60173	-0.00021372	355.17947180774473	34.09	2.8951	34.842	32.67	35.565	0.75225					76	56	2	0	0	0	0.71541	1	12556	12556		7.609	5.3262	1	5326300	+		26583	15569	19080	19234	26033	26033					-0.011941898085069624
KPPFPELRK	9	Unmodified	_KPPFPELRK_					0	0	0		ENSG00000152785|ENST00000282701|BMP3	ENSG00000152785|ENST00000282701|BMP3	ENSG00000152785|ENST00000282701|BMP3	MULTI-SECPEP	A375_MHC_IP_R2	2	371.93255615234375	3	371.225598	1110.65496	0.13913	5.1647E-05	-0.94668	-0.00035143	-0.80755	-0.00029978	371.22525011863866	30.032	0.45715	30.738	30.441	30.898	0.70558					13	8	2	0	0	0	0.775	1	10594	10594		7.1017	2.9122	1	1166900			26584	5984	19081	19235	26034	26034					0.10406301502280257
KPPPPPPPP	9	Unmodified	_KPPPPPPPP_					0	0	0		ENST00000534677.1_1_11:57472348-57479651:-|nuORF;nc|ENSG00000156603|A0JLT2-2|MED19;ENST00000528205.1_1_11:57472131-57479651:-|nuORF;nc|ENSG00000156603|A0JLT2|MED19;ENSG00000156603|ENST00000431606|MED19;FASLG|p.R44K|1|0.37|ENSG00000117560|chr1:172659332-172659332|G/A|missense_variant	ENST00000534677.1_1_11:57472348-57479651:-|nuORF	ENST00000534677.1_1_11:57472348-57479651:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	462.308837890625	2	462.271096	922.527639	-0.3694	-0.00017076	0.10475	4.8421E-05	-0.26466	-0.00012234	462.2710725101858	24.439	1.3154	24.439	24.042	25.357	0					44	25	3	0	0	0	0.042197	2	7061	6867;7061		67.344	15.89	1	6545700			26585	6200	19082	19236	26035;26036	26036					0.06327580628078522
KPPPPPPPP	9	Unmodified	_KPPPPPPPP_					0	0	0		ENST00000534677.1_1_11:57472348-57479651:-|nuORF;nc|ENSG00000156603|A0JLT2-2|MED19;ENST00000528205.1_1_11:57472131-57479651:-|nuORF;nc|ENSG00000156603|A0JLT2|MED19;ENSG00000156603|ENST00000431606|MED19;FASLG|p.R44K|1|0.37|ENSG00000117560|chr1:172659332-172659332|G/A|missense_variant	ENST00000534677.1_1_11:57472348-57479651:-|nuORF	ENST00000534677.1_1_11:57472348-57479651:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	462.3088073730469	2	462.271096	922.527639	-0.791	-0.00036566	0.52716	0.00024369	-0.26384	-0.00012196	462.2711935013144	24.187	1.7269	24.831	24.043	25.77	0.64368					52	33	3	0	0	0	0.050162	1	7794	7794		64.236	6.765	1	4839200			26586	6200	19082	19236	26037	26037					0.06327580628078522
KPPRDVRRRQE	11	Unmodified	_KPPRDVRRRQE_					0	0	0		ENSG00000011007|ENST00000613537|ELOA;nc|ENSG00000011007|Q14241-1|ELOA	ENSG00000011007|ENST00000613537|ELOA	ENSG00000011007|ENST00000613537|ELOA	MULTI-MSMS	A375_MHC_IP_R2	2	479.65716552734375	3	479.611285	1435.81203	-0.49606	-0.00023792	-0.53014	-0.00025426	-1.0262	-0.00049218	479.61084513620256	132.87	1.2183	133.03	132.59	133.8	0.16487					70	23	4	0	0	0	0.73795	1	52230	52230		0.45452	0.046251	1	17820000			26587	988	19083	19237	26038	26038					0.11155354374500348
KPPRFIVKI	9	Unmodified	_KPPRFIVKI_					0	0	0			REV__PCDH20|p.E425K|2|0.2|ENSG00000280165|chr13:61412826-61412826|C/T|missense_variant	REV__PCDH20|p.E425K|2|0.2|ENSG00000280165|chr13:61412826-61412826|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	366.64501953125	3	366.577972	1096.71209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.07	1	36.07	35.57	36.57	0								0	0	0	0.15486	1	12043	12043		11.495	3.8858	1		+		26588	27726	19084	19238	26039	26039					0.16759768778661055
KPPRFIVKI	9	Unmodified	_KPPRFIVKI_					0	0	0			REV__PCDH20|p.E425K|2|0.2|ENSG00000280165|chr13:61412826-61412826|C/T|missense_variant	REV__PCDH20|p.E425K|2|0.2|ENSG00000280165|chr13:61412826-61412826|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	366.64483642578125	3	366.577972	1096.71209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.632	1	36.632	36.132	37.132	0								0	0	0	0.15486	1	12274	12274		11.495	0.6952	1		+		26589	27726	19084	19238	26040	26040					0.16759768778661055
KPPRFIVKI	9	Unmodified	_KPPRFIVKI_					0	0	0			REV__PCDH20|p.E425K|2|0.2|ENSG00000280165|chr13:61412826-61412826|C/T|missense_variant	REV__PCDH20|p.E425K|2|0.2|ENSG00000280165|chr13:61412826-61412826|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	366.64495849609375	3	366.577972	1096.71209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.241	1	37.241	36.741	37.741	0								0	0	0	0.15486	1	12540	12540		8.1555	0	1		+		26590	27726	19084	19238	26041	26041					0.16759768778661055
KPPRFIVKI	9	Unmodified	_KPPRFIVKI_					0	0	0			REV__PCDH20|p.E425K|2|0.2|ENSG00000280165|chr13:61412826-61412826|C/T|missense_variant	REV__PCDH20|p.E425K|2|0.2|ENSG00000280165|chr13:61412826-61412826|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	366.64471435546875	3	366.577972	1096.71209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.572	1	40.572	40.072	41.072	0								0	0	0	0.15386	1	13950	13950		15.248	3.7538	1		+		26591	27726	19084	19238	26042	26042					0.16759768778661055
KPPRFIVKI	9	Unmodified	_KPPRFIVKI_					0	0	0			REV__PCDH20|p.E425K|2|0.2|ENSG00000280165|chr13:61412826-61412826|C/T|missense_variant	REV__PCDH20|p.E425K|2|0.2|ENSG00000280165|chr13:61412826-61412826|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	366.6383972167969	3	366.577972	1096.71209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.284	1	49.284	48.784	49.784	0								0	0	0	0.15486	1	17425	17425		7.609	2.7119	1		+		26592	27726	19084	19238	26043	26043					0.16759768778661055
KPPRFIVKI	9	Unmodified	_KPPRFIVKI_					0	0	0			REV__PCDH20|p.E425K|2|0.2|ENSG00000280165|chr13:61412826-61412826|C/T|missense_variant	REV__PCDH20|p.E425K|2|0.2|ENSG00000280165|chr13:61412826-61412826|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	366.6134948730469	3	366.577972	1096.71209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.508	1	56.259	55.759	56.759	0.75075								0	0	0	0.15486	1	20970	20970		4.5289	0	1		+		26593	27726	19084	19238	26044	26044					0.16759768778661055
KPQFSVRHKA	10	Unmodified	_KPQFSVRHKA_					0	0	0			REV__nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L	REV__nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L	MULTI-MSMS	A375_MHC_IP_R1	1	400.612060546875	3	399.899885	1196.67783	-0.46277	-0.00018506	0.65125	0.00026043	0.18848	7.5374E-05	399.90010793600237	39.625	0.65854	39.625	39.34	39.999	0					42	12	5	0	0	0	0.70312	1	13466	13466		10.899	4.2686	1	18786000	+		26594	16645	19085	19239	26045	26045					0.08735320619757658
KPQLVERAL	9	Unmodified	_KPQLVERAL_					0	0	0			REV__ENST00000424518.5_1_12:54357896-54358059:-|nuORF	REV__ENST00000424518.5_1_12:54357896-54358059:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	352.2933044433594	3	351.885353	1052.63423	-0.44092	-0.00015515	0.60341	0.00021233	0.16249	5.7178E-05	352.2198421266581	30.599	0.65655	30.599	30.15	30.806	0					17	12	2	0	0	0	0.77003	1	9572	9572		11.495	0.6952	1	1062100	+		26595	24627	19086	19240	26046	26046					0.11001711122594315
KPQLVERAL	9	Unmodified	_KPQLVERAL_					0	0	0			REV__ENST00000424518.5_1_12:54357896-54358059:-|nuORF	REV__ENST00000424518.5_1_12:54357896-54358059:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	351.885353	1052.63423	-0.75002	-0.00026392	0.71591	0.00025192	-0.034103	-1.2E-05	351.8855138313088	29.748	0.40294	30.447	30.185	30.588	0.69872	-0.075889	3.8521E-05	NaN	11.495	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1368800	+		26596	24627	19086	19240							0.11001711122594315
KPQVNKRPVLW	11	Unmodified	_KPQVNKRPVLW_					0	0	0			REV__ENST00000480726.1_1_19:10415769-10416199:-|nuORF	REV__ENST00000480726.1_1_19:10415769-10416199:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	456.0095520019531	3	455.610223	1363.80884	-0.05498	-2.5049E-05	-1.0237	-0.00046641	-1.0787	-0.00049146	455.6096331886229	42.713	0.40482	42.713	42.487	42.891	0					15	7	3	0	0	0	0.7342	1	14849	14849		2.2527	0	1	1660200	+		26597	22687	19087	19241	26047	26047					0.14148711267785075
KPRGRPKKL	9	Unmodified	_KPRGRPKKL_					0	0	0		chr6:34243518-34244834|230|28.15|0.66|5.42|+|0|HMGA1,None|1;chr6:34243518-34243616|137|58.82|0.69|6.42|+|0|HMGA1,None|1;ENST00000430198.2_1_4:73964637-73964859:+|nuORF;ENST00000415560.1_1_X:26766244-26766466:+|nuORF;nc|ENSG00000137309|P17096-2|HMGA1;ENSG00000137309|ENST00000311487|HMGA1	chr6:34243518-34244834|230|28.15|0.66|5.42|+|0|HMGA1,None|1	chr6:34243518-34244834|230|28.15|0.66|5.42|+|0|HMGA1,None|1	MSMS	A375_MHC_IP_R2	2	360.62896728515625	3	360.576854	1078.70873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.062	1	29.761	29.261	30.261	0.69872								0	0	0	0.15386	1	10114	10114		15.248	0	1				26598	495	19088	19242	26048	26048					0.17252518724649235
KPRPVFEKK	9	Unmodified	_KPRPVFEKK_					0	0	0		CATIP|p.E281K|1|0.48|ENSG00000158428|chr2:218367438-218367438|G/A|missense_variant	CATIP|p.E281K|1|0.48|ENSG00000158428|chr2:218367438-218367438|G/A|missense_variant	CATIP|p.E281K|1|0.48|ENSG00000158428|chr2:218367438-218367438|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	376.95013427734375	3	376.901114	1127.68151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.746	1	40.52	40.02	41.02	0.77451								0	0	0	0.15486	1	14692	14692		6.6304	1.7334	1				26599	298	19089	19243	26049	26049					0.12277990393613436
KPRQRRLRKQR	11	Unmodified	_KPRQRRLRKQR_					0	0	0		ENST00000263119.9_1_22:24432555-24437617:+|nuORF	ENST00000263119.9_1_22:24432555-24437617:+|nuORF	ENST00000263119.9_1_22:24432555-24437617:+|nuORF	MSMS	A375_MHC_IP_R1	1	761.6812133789062	2	761.487291	1520.96003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.98	1	120.98	120.48	121.48	0								0	0	0	0.16354	1	44881	44881		0.30703	0.30703	1				26600	10316	19090	19244	26050	26050					0.22038710418974006
KPRQRRLRKQR	11	Unmodified	_KPRQRRLRKQR_					0	0	0		ENST00000263119.9_1_22:24432555-24437617:+|nuORF	ENST00000263119.9_1_22:24432555-24437617:+|nuORF	ENST00000263119.9_1_22:24432555-24437617:+|nuORF	MSMS	A375_MHC_IP_R2	2	761.4896850585938	2	761.487291	1520.96003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.812	1	82.555	82.055	83.055	0.74293								0	0	0	0.16354	1	31077	31077		0.30703	0.30703	1				26601	10316	19090	19244	26051	26051					0.22038710418974006
KPRSPQPPSR	10	Unmodified	_KPRSPQPPSR_					0	0	0		ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	MULTI-MSMS	A375_MHC_IP_R2	2	383.6166076660156	3	383.887756	1148.64144	-0.018065	-6.9351E-06	0.047856	1.8371E-05	0.02979	1.1436E-05	384.22253553922246	42.702	1.7237	43.474	42.86	44.583	0.7724					43	26	2	0	0	0	0.71763	1	15891	15891		4.4062	0	1	4647200			26602	6311	19091	19245	26052	26052					0.07306443723041411
KPRSTQTPAAV	11	Unmodified	_KPRSTQTPAAV_					0	0	0			REV__ENSG00000198646|ENST00000359003|NCOA6	REV__ENSG00000198646|ENST00000359003|NCOA6	MSMS	A375_MHC_IP_R2	2	385.9361572265625	3	385.887533	1154.64077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.495	1	26.139	25.639	26.639	0.64368								0	0	0	0.162	1	8526	8526		8.2864	0.34103	1		+		26603	22391	19092	19246	26053	26053					0.06963604283305358
KPRSVLRFV	9	Unmodified	_KPRSVLRFV_					0	0	0			REV__ENSG00000153207|ENST00000648844|AHCTF1	REV__ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MSMS	A375_MHC_IP_R2	2	367.945068359375	3	367.901226	1100.68185	-0.23162	-8.5213E-05	-0.096207	-3.5395E-05	-0.32783	-0.00012061	367.9011791699495	34.025	0.81264	34.778	34.5	35.312	0.75225					34	15	3	0	0	0	0.69884	1	12448	12448		7.1017	0.47135	1	54158000	+		26604	19832	19093	19247	26054	26054					0.1355341011346809
KPRYRHRLLRH	11	Unmodified	_KPRYRHRLLRH_					0	0	0		nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX;nc|ENSG00000085224|P46100-6|ATRX;ATRX|p.A1790Vfs*21|1|0.33|ENSG00000085224|chrX:77618885-77618886|-/CACA|frameshift_variant;nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX	nc|ENSG00000085224|P46100-4|ATRX	nc|ENSG00000085224|P46100-4|ATRX	MSMS	A375_MHC_IP_R2	2	766.7860717773438	2	766.463284	1530.91202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.46	1	119.99	119.49	120.49	0.5321								0	0	0	0.16334	1	45508	45508		1.3295	0.92882	1				26605	1808	19094	19248	26055	26055					0.1677963649897265
KPSDVDNPV	9	Unmodified	_KPSDVDNPV_					0	0	0			REV__AP1M1|p.A320V|1|0.08|ENSG00000072958|chr19:16228840-16228840|C/T|missense_variant	REV__AP1M1|p.A320V|1|0.08|ENSG00000072958|chr19:16228840-16228840|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	486.14495849609375	2	485.745639	969.476725	-0.48521	-0.00023569	0.071125	3.4549E-05	-0.41408	-0.00020114	485.745621741417	41.152	0.60669	41.152	40.813	41.419	0					19	11	2	0	0	0	0.35487	1	14198	14198		43.858	9.4566	1	3705200	+		26606	15416	19095	19249	26056	26056					-0.009234132074311674
KPSLGLREKY	10	Unmodified	_KPSLGLREKY_					0	0	0			REV__ENSG00000175766|ENST00000318682|EIF4E1B	REV__ENSG00000175766|ENST00000318682|EIF4E1B	MSMS	A375_MHC_IP_R2	2	595.88330078125	2	595.84823	1189.68191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.985	1	95.735	95.235	96.235	0.75045								0	0	0	0.15531	1	36088	36088		3.5965	0	1		+		26607	21366	19096	19250	26057	26057					0.09465365322807884
KPSLPPRHTV	10	Unmodified	_KPSLPPRHTV_					0	0	0			REV__nc|ENSG00000161847|Q8IY67-3|RAVER1	REV__nc|ENSG00000161847|Q8IY67-3|RAVER1	MULTI-SECPEP	A375_MHC_IP_R1	1	378.5841369628906	3	377.892619	1130.65603	0.61012	0.00023056	-0.4927	-0.00018619	0.11742	4.4374E-05	377.8923659096258	21.669	0.55936	21.669	21.301	21.86	0					12	10	2	0	0	0	0.92957	1	5602	5602		8.9762	5.904	1	515260	+		26608	20220	19097	19251	26058	26058					0.09592515871190699
KPSQFDSTIEL	11	Unmodified	_KPSQFDSTIEL_					0	0	0			REV__AARD|p.S144F|1|0.35|ENSG00000205002|chr8:116942664-116942664|C/T|missense_variant	REV__AARD|p.S144F|1|0.35|ENSG00000205002|chr8:116942664-116942664|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	633.2027587890625	2	632.824618	1263.63468	-0.77555	-0.00049079	0.24218	0.00015326	-0.53337	-0.00033753	632.8249441505886	103.4	0.61008	104.17	103.89	104.5	0.76428					15	11	2	0	0	0	0.9754	1	39148	39148		17.113	5.6182	1	2441100	+		26609	15279	19098	19252	26059	26059					0.013410412611847278
KPTAARTR	8	Unmodified	_KPTAARTR_					0	0	0		VPREB1|p.E136K|1|0.89|ENSG00000169575|chr22:22245305-22245305|G/A|missense_variant	VPREB1|p.E136K|1|0.89|ENSG00000169575|chr22:22245305-22245305|G/A|missense_variant	VPREB1|p.E136K|1|0.89|ENSG00000169575|chr22:22245305-22245305|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	451.1722412109375	2	450.772326	899.530098	-0.19121	-8.6192E-05	0.34774	0.00015675	0.15653	7.0561E-05	450.77245177906417	134.07	0.30807	134.24	134.11	134.42	0.16487					6	5	2	0	0	0	0.77741	1	52782	52782		4.3292	1.7518	1	1715400			26610	30144	19099	19253	26060	26060					0.07631429085745367
KPTGLGSAGSS	11	Unmodified	_KPTGLGSAGSS_					0	0	0			REV__nc|ENSG00000102001|O60840-5|CACNA1F	REV__nc|ENSG00000102001|O60840-5|CACNA1F	MSMS	A375_MHC_IP_R2	2	481.189453125	2	481.251089	960.487624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.11	1	21.729	21.229	22.229	0.61932								0	0	0	0.16213	1	6623	6623		7.609	0.31972	1		+		26611	17199	19100	19254	26061	26061					0.005799891668630153
KPTHEILQK	9	Unmodified	_KPTHEILQK_					0	0	0		nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;ENSG00000102893|ENST00000323584|PHKB;ENST00000568171.1_1_16:47684769-47697703:+|nuORF	nc|ENSG00000102893|Q93100-4|PHKB	nc|ENSG00000102893|Q93100-4|PHKB	MULTI-SECPEP	A375_MHC_IP_R2	2	547.3974609375	2	547.321848	1092.62914	-0.59668	-0.00032658	-0.025115	-1.3746E-05	-0.6218	-0.00034032	547.3217646051045	142.78	1.015	142.81	142.23	143.24	0.030731					51	19	5	0	0	0	0.80713	1	55915	55915		6.7232	4.4204	1	5894800			26612	14520	19101	19255	26062	26062					0.08653407259998858
KPTHQPILSSR	11	Unmodified	_KPTHQPILSSR_					0	0	0			REV__ENST00000501122.2_1_11:65211032-65211398:+|nuORF	REV__ENST00000501122.2_1_11:65211032-65211398:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	632.7601928710938	2	632.362036	1262.70952	-0.88038	-0.00055672	-0.947	-0.00059885	-1.8274	-0.0011556	632.3613323643175	131.67	0.85657	131.67	131.43	132.28	0					32	16	2	0	0	0	0.7342	1	50995	50995		4.897	2.1618	1	31257000	+		26613	25491	19102	19256	26063	26063					0.08867268583026089
KPTLILRTQLS	11	Unmodified	_KPTLILRTQLS_					0	0	0		FHOD1|p.G581Efs*47|1|0.35|ENSG00000135723|chr16:67233961-67233961|C/-|frameshift_variant;ENSG00000135723|ENST00000258201|FHOD1;ENST00000567752.5_1_16:67272761-67281313:-|nuORF	FHOD1|p.G581Efs*47|1|0.35|ENSG00000135723|chr16:67233961-67233961|C/-|frameshift_variant	FHOD1|p.G581Efs*47|1|0.35|ENSG00000135723|chr16:67233961-67233961|C/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	635.4628295898438	2	635.398087	1268.78162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.31	1	141.35	140.85	141.85	0.04216								0	0	0	0.16312	1	55278	55278		2.4985	1.0166	1				26614	4708	19103	19257	26064	26064					0.15798182936782723
KPTLTIIKTEK	11	Unmodified	_KPTLTIIKTEK_					0	0	0		nc|ENSG00000134954|P14921|ETS1;nc|ENSG00000134954|P14921-4|ETS1;nc|ENSG00000134954|P14921-5|ETS1;nc|ENSG00000134954|P14921-2|ETS1	nc|ENSG00000134954|P14921|ETS1	nc|ENSG00000134954|P14921|ETS1	MULTI-MSMS	A375_MHC_IP_R2	2	636.46142578125	2	636.400295	1270.78604	-0.59186	-0.00037666	-0.11958	-7.6103E-05	-0.71144	-0.00045276	636.3999807081943	149.33	3.328	149.34	146.68	150.01	0.01825					526	209	7	0	0	0	0.73906	1	57145	57145		0.26902	0.26902	1	8168500			26615	14614	19104	19258	26065	26065					0.1614764735963945
KPTPMVIETEE	11	Unmodified	_KPTPMVIETEE_					0	0	0			REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	MULTI-MSMS	A375_MHC_IP_R1	1	425.6160583496094	3	425.216328	1272.62715	0.055369	2.3544E-05	-0.15423	-6.5583E-05	-0.098864	-4.2039E-05	425.21628501282765	20.767	0.81565	20.767	20.536	21.352	0					53	15	4	0	0	0	0.73284	1	5578	5578		3.134	3.134	1	19799000	+		26616	19582	19105	19259	26066	26066					0.001745656692492048
KPTWLQEKLKE	11	Unmodified	_KPTWLQEKLKE_					0	0	0			REV__nc|ENSG00000135164|Q9Y222-2|DMTF1	REV__nc|ENSG00000135164|Q9Y222-2|DMTF1	MULTI-SECPEP	A375_MHC_IP_R2	2	699.8085327148438	2	700.400827	1398.7871	-0.51772	-0.00036261	-0.85445	-0.00059846	-1.3722	-0.00096107	700.9020175303198	138.54	0.35651	138.63	138.32	138.67	0.083969					11	6	2	0	0	0	1.0011	1	54245	54245		0.96228	0.50394	1	805580	+		26617	27238	19106	19260	26067	26067					0.10365861728541859
KPVAQGGL	8	Unmodified	_KPVAQGGL_					0	0	0		ENSG00000205978|ENST00000382554|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	MULTI-SECPEP	A375_MHC_IP_R2	2	384.9817810058594	2	385.231971	768.449388	-0.3348	-0.00012897	0.34895	0.00013443	0.01415	5.4511E-06	385.23203111042466	36.346	0.56021	37.117	36.85	37.41	0.7709					16	10	2	0	0	0	0.972	1	13267	13267		4.756	0	1	3529200			26618	9535	19107	19261	26068	26068					0.05590148042870169
KPVEPVKAAPT	11	Unmodified	_KPVEPVKAAPT_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R1	1	379.960693359375	3	379.560646	1135.66011	0.11375	4.3175E-05	-0.59504	-0.00022585	-0.48129	-0.00018268	379.5603751501292	24.117	0.81205	24.117	23.635	24.447	0					20	15	2	0	0	0	0.72513	1	6797	6797		13.535	1.3602	1	9706300	+		26619	19932	19108	19262	26069	26069					0.09770560574224874
KPVFVLKPV	9	Unmodified	_KPVFVLKPV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;TTN|p.L14011*|1|0.26|ENSG00000155657|chr2:178618595-178618595|A/-|frameshift_variant;TTN|p.V5956Efs*8|1|0.3|ENSG00000155657|chr2:178729292-178729338|CAGGGCAACTCTAGTACTGCATGAGCAGCTGCCGCCTTCATTGGATA/-|frameshift_variant;TTN|p.F5884Lfs*5|1|0.04|ENSG00000155657|chr2:178729553-178729553|A/-|frameshift_variant;TTN|p.D2189Tfs*17|1|0.21|ENSG00000155657|chr2:178775147-178775147|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	A375_MHC_IP_R2	2	513.9308471679688	2	513.839146	1025.66374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.61	1	43.382	42.882	43.882	0.7724								0	0	0	0.15486	1	15857	15857		2.0598	1.2661	1				26620	6151;14694;14693	19109	19263	26070	26070					0.15193275138744866
KPVPFEEPKGL	11	Unmodified	_KPVPFEEPKGL_					0	0	0			REV__ENSG00000187566|ENST00000340650|NHLRC1	REV__ENSG00000187566|ENST00000340650|NHLRC1	MULTI-MSMS	A375_MHC_IP_R2	2	414.600341796875	3	414.236051	1239.68632	-0.28342	-0.0001174	0.62815	0.0002602	0.34473	0.0001428	414.23609024002315	38.164	0.56308	38.938	38.687	39.25	0.77451					13	10	2	0	0	0	0.72869	1	14006	14006		8.2864	2.503	1	1360400	+		26621	22029	19110	19264	26071	26071					0.07606829745691357
KPVPFEEPKGL	11	Unmodified	_KPVPFEEPKGL_					0	0	0			REV__ENSG00000187566|ENST00000340650|NHLRC1	REV__ENSG00000187566|ENST00000340650|NHLRC1	MULTI-MATCH	A375_MHC_IP_R1	1		3	414.236051	1239.68632	0.5241	0.0002171	0.88189	0.00036531	1.406	0.00058241	414.2363223029258	39.249	0.45871	39.249	38.933	39.391	0	0.15526	8.1251E-05	NaN	8.2864	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1845200	+		26622	22029	19110	19264							0.07606829745691357
KPVPFEEPKGL	11	Unmodified	_KPVPFEEPKGL_					0	0	0			REV__ENSG00000187566|ENST00000340650|NHLRC1	REV__ENSG00000187566|ENST00000340650|NHLRC1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	414.236051	1239.68632	-0.28342	-0.0001174	0.62815	0.0002602	0.34473	0.0001428	414.23609024002315	38.164	0.56308	38.938	38.687	39.25	0.77451	-0.15526	-0.00023406	NaN	8.2864	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1360400	+		26623	22029	19110	19264							0.07606829745691357
KPWLYDLWEVW	11	Unmodified	_KPWLYDLWEVW_					0	0	0		ENSG00000154227|ENST00000679737|CERS3	ENSG00000154227|ENST00000679737|CERS3	ENSG00000154227|ENST00000679737|CERS3	MSMS	A375_MHC_IP_R1	1	767.7894287109375	2	767.890095	1533.76564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.45	1	112.45	111.95	112.95	0								0	0	0	0.16203	1	41213	41213		8.1555	2.8586	1				26624	6071	19111	19265	26072	26072					0.020104766998429113
KPWSKRWERPN	11	Unmodified	_KPWSKRWERPN_					0	0	0		ENSG00000115364|ENST00000393909|MRPL19	ENSG00000115364|ENST00000393909|MRPL19	ENSG00000115364|ENST00000393909|MRPL19	MULTI-SECPEP	A375_MHC_IP_R1	1	494.6822509765625	3	495.268748	1482.78442	-0.23757	-0.00011766	-1.0854	-0.00053754	-1.3229	-0.0006552	495.26812301468635	35.928	0.35659	35.928	35.676	36.033	0					10	6	3	0	0	0	1.0004	1	11982	11982		0.40827	0	1	3293500			26625	3303	19112	19266	26073	26073					0.062334511142580595
KPYSSGGPRVW	11	Unmodified	_KPYSSGGPRVW_					0	0	0		nc|ENSG00000105220|P06744-2|GPI;ENSG00000105220|ENST00000356487|GPI	nc|ENSG00000105220|P06744-2|GPI	nc|ENSG00000105220|P06744-2|GPI	MULTI-SECPEP	A375_MHC_IP_R1	1	412.1396789550781	3	411.884012	1232.63021	-0.099759	-4.1089E-05	-0.87473	-0.00036029	-0.97449	-0.00040138	412.2187541958104	32.638	0.60499	32.638	32.282	32.887	0					18	11	3	0	0	0	0.39105	1	10569	10569		39.413	32.789	1	2172600			26626	2576	19113	19267	26074	26074					0.023196216288852156
KQAEIVKRL	9	Unmodified	_KQAEIVKRL_					0	0	0		nc|ENSG00000065717|Q04725-2|TLE2;nc|ENSG00000065717|Q04725-3|TLE2;ENSG00000065717|ENST00000262953|TLE2;ENST00000485159.5_1_9:82188246-82242462:+|nuORF;ENSG00000104964|ENST00000327141|TLE5;ENST00000592414.1_1_19:3055403-3056603:-|nuORF;nc|ENSG00000104964|Q08117-2|TLE5;nc|ENSG00000106829|Q04727-2|TLE4;nc|ENSG00000106829|Q04727-4|TLE4;ENSG00000106829|ENST00000376552|TLE4;nc|ENSG00000106829|Q04727-3|TLE4	nc|ENSG00000065717|Q04725-2|TLE2	nc|ENSG00000065717|Q04725-2|TLE2	MULTI-MSMS	A375_MHC_IP_R1	1	362.632568359375	3	362.232752	1083.67643	0.28002	0.00010143	-0.57853	-0.00020956	-0.29852	-0.00010813	362.2325107320734	20.465	0.76318	20.465	20.03	20.793	0					41	14	4	0	0	0	0.095445	2	5205	5205;5323		51.488	24.265	1	19605000			26627	1392	19114	19268	26075;26076	26075					0.1379368653099391
KQAEIVKRL	9	Unmodified	_KQAEIVKRL_					0	0	0		nc|ENSG00000065717|Q04725-2|TLE2;nc|ENSG00000065717|Q04725-3|TLE2;ENSG00000065717|ENST00000262953|TLE2;ENST00000485159.5_1_9:82188246-82242462:+|nuORF;ENSG00000104964|ENST00000327141|TLE5;ENST00000592414.1_1_19:3055403-3056603:-|nuORF;nc|ENSG00000104964|Q08117-2|TLE5;nc|ENSG00000106829|Q04727-2|TLE4;nc|ENSG00000106829|Q04727-4|TLE4;ENSG00000106829|ENST00000376552|TLE4;nc|ENSG00000106829|Q04727-3|TLE4	nc|ENSG00000065717|Q04725-2|TLE2	nc|ENSG00000065717|Q04725-2|TLE2	MULTI-MSMS	A375_MHC_IP_R2	2	362.6324768066406	3	362.232752	1083.67643	-0.42092	-0.00015247	-0.18135	-6.5691E-05	-0.60226	-0.00021816	362.2326680501226	19.105	0.53321	19.708	19.452	19.986	0.60308					16	10	2	0	0	0	0.014055	2	5831	5803;5831		91.085	37.704	1	19070000			26628	1392	19114	19268	26077;26078	26078					0.1379368653099391
KQAGFIRTF	9	Unmodified	_KQAGFIRTF_					0	0	0		ENSG00000102743|ENST00000338625|SLC25A15	ENSG00000102743|ENST00000338625|SLC25A15	ENSG00000102743|ENST00000338625|SLC25A15	MULTI-MSMS	A375_MHC_IP_R1	1	534.4364013671875	2	534.303458	1066.59236	-0.69984	-0.00037393	0.20362	0.0001088	-0.49622	-0.00026513	534.3035526467231	43.884	0.45826	43.884	43.655	44.113	0					29	8	4	0	0	0	0.33314	1	15239	15239		29.437	25.108	1	73388000			26629	2389	19115	19269	26079	26079					0.061731554340894945
KQAGFIRTF	9	Unmodified	_KQAGFIRTF_					0	0	0		ENSG00000102743|ENST00000338625|SLC25A15	ENSG00000102743|ENST00000338625|SLC25A15	ENSG00000102743|ENST00000338625|SLC25A15	MULTI-MSMS	A375_MHC_IP_R1	1	356.9380798339844	3	356.538064	1066.59236	0.0018598	6.631E-07	0.09652	3.4413E-05	0.09838	3.5076E-05	356.5380727508296	43.885	0.76659	43.885	43.603	44.37	0					49	14	5	0	0	0	0.021859	1	15243	15243		81.915	39.603	1	74163000			26630	2389	19115	19269	26080	26080					0.061731554340894945
KQAGFIRTF	9	Unmodified	_KQAGFIRTF_					0	0	0		ENSG00000102743|ENST00000338625|SLC25A15	ENSG00000102743|ENST00000338625|SLC25A15	ENSG00000102743|ENST00000338625|SLC25A15	MULTI-MSMS	A375_MHC_IP_R2	2	356.93780517578125	3	356.538064	1066.59236	-0.1303	-4.6457E-05	-0.092613	-3.302E-05	-0.22291	-7.9477E-05	356.53803242363745	42.961	0.70972	43.734	43.369	44.079	0.7724					44	13	5	0	0	0	0.021859	1	15945	15945		81.915	36.216	1	60002000			26631	2389	19115	19269	26081	26081					0.061731554340894945
KQAGFIRTF	9	Unmodified	_KQAGFIRTF_					0	0	0		ENSG00000102743|ENST00000338625|SLC25A15	ENSG00000102743|ENST00000338625|SLC25A15	ENSG00000102743|ENST00000338625|SLC25A15	MULTI-SECPEP	A375_MHC_IP_R2	2	534.703125	2	534.303458	1066.59236	-0.70043	-0.00037424	0.047241	2.5241E-05	-0.65319	-0.000349	534.303457750005	42.927	0.50547	43.7	43.421	43.926	0.7724					27	9	4	0	0	0	0.013591	1	15944	15944		96.367	64.061	1	61280000			26632	2389	19115	19269	26082	26082					0.061731554340894945
KQAGRWWSY	9	Unmodified	_KQAGRWWSY_					0	0	0		ENST00000510957.1_1_22:31050657-31050735:-|nuORF	ENST00000510957.1_1_22:31050657-31050735:-|nuORF	ENST00000510957.1_1_22:31050657-31050735:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	394.9329833984375	3	394.533202	1180.57778	-0.14601	-5.7606E-05	0.25295	9.9797E-05	0.10694	4.219E-05	394.53329180224046	46.816	0.76655	46.816	46.444	47.211	0					43	14	4	0	0	0	0.46121	1	16396	16396		38.615	18.034	1	15994000			26633	12902	19116	19270	26083	26083					-0.005289167140517748
KQAGRWWSY	9	Unmodified	_KQAGRWWSY_					0	0	0		ENST00000510957.1_1_22:31050657-31050735:-|nuORF	ENST00000510957.1_1_22:31050657-31050735:-|nuORF	ENST00000510957.1_1_22:31050657-31050735:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	591.696533203125	2	591.296165	1180.57778	-0.48494	-0.00028675	0.2029	0.00011997	-0.28205	-0.00016677	591.2963185090114	46.751	0.6105	46.751	46.444	47.055	0					26	11	4	0	0	0	0.031881	1	16408	16408		118.07	80.094	1	9128400			26634	12902	19116	19270	26084	26084					-0.005289167140517748
KQAGRWWSY	9	Unmodified	_KQAGRWWSY_					0	0	0		ENST00000510957.1_1_22:31050657-31050735:-|nuORF	ENST00000510957.1_1_22:31050657-31050735:-|nuORF	ENST00000510957.1_1_22:31050657-31050735:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	394.93341064453125	3	394.533202	1180.57778	-0.11915	-4.701E-05	0.021031	8.2976E-06	-0.098121	-3.8712E-05	394.5332081734863	45.868	0.75446	46.633	46.353	47.108	0.76518					42	14	4	0	0	0	0.14858	1	17131	17131		41.956	22.33	1	22318000			26635	12902	19116	19270	26085	26085					-0.005289167140517748
KQAGRWWSY	9	Unmodified	_KQAGRWWSY_					0	0	0		ENST00000510957.1_1_22:31050657-31050735:-|nuORF	ENST00000510957.1_1_22:31050657-31050735:-|nuORF	ENST00000510957.1_1_22:31050657-31050735:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	591.6961059570312	2	591.296165	1180.57778	-0.53406	-0.00031579	0.17403	0.00010291	-0.36003	-0.00021288	591.2962955016714	45.88	0.75583	46.646	46.201	46.957	0.76519					28	14	3	0	0	0	0.050514	1	17145	17145		93.166	62.529	1	9142400			26636	12902	19116	19270	26086	26086					-0.005289167140517748
KQASGETDSG	10	Unmodified	_KQASGETDSG_					0	0	0			REV__nc|ENSG00000168386|Q4L180-4|FILIP1L	REV__nc|ENSG00000168386|Q4L180-4|FILIP1L	MSMS	A375_MHC_IP_R1	1	490.1974792480469	2	490.219985	978.425418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.29	1	142.29	141.79	142.79	0								0	0	0	0.15353	1	54598	54598		9.3831	4.1525	1		+		26637	20848	19117	19271	26087	26087					-0.06465781972144669
KQDSDVSV	8	Unmodified	_KQDSDVSV_					0	0	0			REV__nc|ENSG00000138448|P06756-3|ITGAV	REV__nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	A375_MHC_IP_R2	2	439.6659240722656	2	439.216714	876.418876	-0.40591	-0.00017828	0.42474	0.00018655	0.018825	8.2682E-06	439.2168625590878	39.402	0.71318	40.177	39.658	40.371	0.77451					22	13	3	0	0	0	0.77488	1	14532	14532		13.508	2.684	1	3229400	+		26638	19096	19118	19272	26088	26088					-0.024276751328443424
KQDSDVSV	8	Unmodified	_KQDSDVSV_					0	0	0			REV__nc|ENSG00000138448|P06756-3|ITGAV	REV__nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	439.216714	876.418876	-0.21248	-9.3324E-05	-0.067266	-2.9544E-05	-0.27974	-0.00012287	439.2166755706704	40.073	0.56119	40.073	39.845	40.406	0	-0.051906	-0.00022401	NaN	13.508	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1245300	+		26639	19096	19118	19272							-0.024276751328443424
KQENVNLLY	9	Unmodified	_KQENVNLLY_					0	0	0			REV__ENST00000394848.5_1_17:27994209-27998998:-|nuORF	REV__ENST00000394848.5_1_17:27994209-27998998:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	561.2034301757812	2	560.803488	1119.59242	-0.4789	-0.00026857	-0.2505	-0.00014048	-0.7294	-0.00040905	561.304562176393	75.589	0.45161	75.589	75.262	75.714	0					13	8	2	0	0	0	0.69381	1	27577	27577		20.415	0	1	2131300	+		26640	24311	19119	19273	26089	26089					0.03741110643454704
KQESWKQEL	9	Unmodified	_KQESWKQEL_					0	0	0			REV__ENST00000199389.10_1_7:6066510-6066543:-|nuORF	REV__ENST00000199389.10_1_7:6066510-6066543:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	588.7060546875	2	588.306395	1174.59824	-0.39877	-0.0002346	0.10512	6.1845E-05	-0.29364	-0.00017275	588.3064569197969	27.543	0.96	27.543	27.128	28.088	0					52	18	4	0	0	0	0.0099819	1	8294	8294		122.18	33.225	1	18619000	+		26641	23022	19120	19274	26090	26090					0.017922091551099584
KQESWKQEL	9	Unmodified	_KQESWKQEL_					0	0	0			REV__ENST00000199389.10_1_7:6066510-6066543:-|nuORF	REV__ENST00000199389.10_1_7:6066510-6066543:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	392.9400329589844	3	392.540022	1174.59824	-0.0041871	-1.6436E-06	0.086355	3.3898E-05	0.082168	3.2254E-05	392.5400544704618	27.601	0.80802	27.601	27.179	27.987	0					39	15	3	0	0	0	0.51395	1	8339	8339		35.612	35.612	1	7810700	+		26642	23022	19120	19274	26091	26091					0.017922091551099584
KQESWKQEL	9	Unmodified	_KQESWKQEL_					0	0	0			REV__ENST00000199389.10_1_7:6066510-6066543:-|nuORF	REV__ENST00000199389.10_1_7:6066510-6066543:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	588.70556640625	2	588.306395	1174.59824	-0.75803	-0.00044596	0.39405	0.00023182	-0.36399	-0.00021414	588.3065987325318	26.935	0.868	27.595	27.212	28.08	0.65992					49	16	4	0	0	0	0.017727	1	9065	9065		86.332	16	1	17473000	+		26643	23022	19120	19274	26092	26092					0.017922091551099584
KQESWKQEL	9	Unmodified	_KQESWKQEL_					0	0	0			REV__ENST00000199389.10_1_7:6066510-6066543:-|nuORF	REV__ENST00000199389.10_1_7:6066510-6066543:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	392.93988037109375	3	392.540022	1174.59824	-0.38122	-0.00014965	0.55176	0.00021659	0.17054	6.6943E-05	392.54021291831174	27	0.76562	27.665	27.217	27.982	0.66507					35	14	3	0	0	0	0.55534	1	9075	9075		32.037	32.037	1	6399600	+		26644	23022	19120	19274	26093	26093					0.017922091551099584
KQESWKQEL	9	Unmodified	_KQESWKQEL_					0	0	0			REV__ENST00000199389.10_1_7:6066510-6066543:-|nuORF	REV__ENST00000199389.10_1_7:6066510-6066543:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	588.306395	1174.59824	-0.39877	-0.0002346	0.10512	6.1845E-05	-0.29364	-0.00017275	588.3064569197969	27.543	0.96	27.543	27.128	28.088	0	-0.025868	-8.7998E-05	NaN	122.18	52	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18619000	+		26645	23022	19120	19274							0.017922091551099584
KQESWKQEL	9	Unmodified	_KQESWKQEL_					0	0	0			REV__ENST00000199389.10_1_7:6066510-6066543:-|nuORF	REV__ENST00000199389.10_1_7:6066510-6066543:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	588.306395	1174.59824	-0.75803	-0.00044596	0.39405	0.00023182	-0.36399	-0.00021414	588.3065987325318	26.935	0.868	27.595	27.212	28.08	0.65992	0.025868	0.00025195	NaN	122.18	49	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17473000	+		26646	23022	19120	19274							0.017922091551099584
KQFEERHEYIY	11	Unmodified	_KQFEERHEYIY_					0	0	0			REV__ENST00000463287.1_1_22:38508170-38508779:-|nuORF	REV__ENST00000463287.1_1_22:38508170-38508779:-|nuORF	MSMS	A375_MHC_IP_R1	1	514.6453247070312	3	514.584291	1540.73104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.224	1	26.224	25.724	26.724	0								0	0	0	0.1624	1	7787	7787		6.2344	1.5184	1		+		26647	21814	19121	19275	26094	26094					-0.01769391178868318
KQFEKQVEL	9	Unmodified	_KQFEKQVEL_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MSMS	A375_MHC_IP_R1	1	575.218505859375	2	574.819138	1147.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.915	1	29.915	29.415	30.415	0								0	0	0	0.036731	1	9438	9438		61.09	23.116	1				26648	9114	19122	19276	26095	26095					0.0558168367754206
KQFEKQVEL	9	Unmodified	_KQFEKQVEL_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R2	2	383.9482727050781	3	383.548518	1147.62372	-0.95719	-0.00036713	1.6511	0.00063327	0.69388	0.00026614	383.54876081830577	29.136	0.80188	29.835	29.484	30.286	0.69872					21	15	2	0	0	0	0.13845	1	10120	10120		34.222	14.596	1	8142600			26649	9114	19122	19276	26096	26096					0.0558168367754206
KQFHRIVTY	9	Unmodified	_KQFHRIVTY_					0	0	0		ENSG00000213965|ENST00000397061|NUDT19	ENSG00000213965|ENST00000397061|NUDT19	ENSG00000213965|ENST00000397061|NUDT19	MULTI-SECPEP	A375_MHC_IP_R1	1	398.2925109863281	3	397.892619	1190.65603	-0.1275	-5.0732E-05	-0.058224	-2.3167E-05	-0.18572	-7.3898E-05	397.89253761029613	25.133	0.66141	25.133	25.002	25.664	0					25	12	3	0	0	0	0.3213	1	7304	7304		34.932	34.932	1	12980000			26650	9593	19123	19277	26097	26097					0.06832515871201394
KQFHRIVTY	9	Unmodified	_KQFHRIVTY_					0	0	0		ENSG00000213965|ENST00000397061|NUDT19	ENSG00000213965|ENST00000397061|NUDT19	ENSG00000213965|ENST00000397061|NUDT19	MULTI-SECPEP	A375_MHC_IP_R2	2	398.2923278808594	3	397.892619	1190.65603	-0.41533	-0.00016526	-0.2667	-0.00010612	-0.68203	-0.00027138	397.89251963401404	24.441	0.45625	25.085	24.958	25.414	0.64368					11	8	2	0	0	0	0.16676	1	8035	8035		45.74	28.168	1	13260000			26651	9593	19123	19277	26098	26098					0.06832515871201394
KQFPTAFEF	9	Unmodified	_KQFPTAFEF_					0	0	0		nc|ENSG00000171100|Q13496-2|MTM1;ENSG00000171100|ENST00000370396|MTM1	nc|ENSG00000171100|Q13496-2|MTM1	nc|ENSG00000171100|Q13496-2|MTM1	MULTI-MSMS	A375_MHC_IP_R1	1	558.9038696289062	2	557.782025	1113.5495	-0.49845	-0.00027803	0.30268	0.00016883	-0.19577	-0.0001092	557.782166640485	89.393	1.2156	89.393	88.867	90.083	0					38	23	3	0	0	0	0.51106	1	32813	32813		19.257	8.4331	1	3522000			26652	7573	19124	19278	26099	26099					-0.0027365941400603333
KQFPTAFEF	9	Unmodified	_KQFPTAFEF_					0	0	0		nc|ENSG00000171100|Q13496-2|MTM1;ENSG00000171100|ENST00000370396|MTM1	nc|ENSG00000171100|Q13496-2|MTM1	nc|ENSG00000171100|Q13496-2|MTM1	MULTI-MSMS	A375_MHC_IP_R2	2	558.18212890625	2	557.782025	1113.5495	-0.66367	-0.00037018	-0.27913	-0.0001557	-0.9428	-0.00052588	557.7819710020311	88.509	1.1601	89.241	88.825	89.985	0.7318					49	22	4	0	0	0	0.040308	1	33659	33659		68.081	33.978	1	3026300			26653	7573	19124	19278	26100	26100					-0.0027365941400603333
KQFSITLLQM	10	Unmodified	_KQFSITLLQM_					0	0	0		DNAH5|p.P4139S|1|0.26|ENSG00000039139|chr5:13718966-13718966|G/A|missense_variant	DNAH5|p.P4139S|1|0.26|ENSG00000039139|chr5:13718966-13718966|G/A|missense_variant	DNAH5|p.P4139S|1|0.26|ENSG00000039139|chr5:13718966-13718966|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	604.81591796875	2	604.839017	1207.66348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.882	1	95.627	95.127	96.127	0.74474								0	0	0	0.15265	1	36050	36050		12.241	0	1				26654	769	19125	19279	26101	26101					0.06795487356589547
KQGITFNEQF	10	Unmodified	_KQGITFNEQF_					0	0	0			REV__CCDC93|p.S78F|1|0.26|ENSG00000125633|chr2:118006740-118006740|G/A|missense_variant	REV__CCDC93|p.S78F|1|0.26|ENSG00000125633|chr2:118006740-118006740|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	404.1242370605469	3	404.540022	1210.59824	-0.48845	-0.0001976	0.66238	0.00026796	0.17394	7.0364E-05	404.5402999796564	59.148	0.45835	59.148	58.938	59.397	0					13	8	2	0	0	0	0.94421	1	21275	21275		0.69767	0	1	941050	+		26655	15602	19126	19280	26102	26102					0.0013620915506180609
KQHKQVWWQEY	11	Unmodified	_KQHKQVWWQEY_					0	0	0		ENST00000451554.1_1_2:159145303-159312956:-|nuORF;ENSG00000153237|ENST00000283233|CCDC148;nc|ENSG00000153237|Q8NFR7-3|CCDC148	ENST00000451554.1_1_2:159145303-159312956:-|nuORF	ENST00000451554.1_1_2:159145303-159312956:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	780.1343383789062	2	780.391325	1558.7681	-0.80562	-0.0006287	-1.1956	-0.00093301	-2.0012	-0.0015617	780.8923422784542	67.586	0.35562	67.586	67.399	67.754	0					14	6	3	0	0	0	0.99738	1	24554	24554		5.2969	2.5617	1	2508700			26656	6020	19127	19281	26103	26103					0.011063251575023969
KQHLLLPV	8	Unmodified	_KQHLLLPV_					0	0	0			REV__ENSG00000116830|ENST00000369466|TTF2	REV__ENSG00000116830|ENST00000369466|TTF2	MSMS	A375_MHC_IP_R1	1	474.33441162109375	2	474.30547	946.596387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.29	1	134.29	133.79	134.79	0								0	0	0	0.16876	1	51790	51790		0.79363	0	1		+		26657	17975	19128	19282	26104	26104					0.1209524492780929
KQHRMYHQQFA	11	Unmodified	_KQHRMYHQQFA_					0	0	0			REV__POGZ|p.G685Tfs*22|1|0.44|ENSG00000143442|chr1:151408702-151408703|-/TGGT|frameshift_variant	REV__POGZ|p.G685Tfs*22|1|0.44|ENSG00000143442|chr1:151408702-151408703|-/TGGT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	491.6443176269531	3	491.910455	1472.70954	-0.33071	-0.00016268	-1.8563	-0.00091314	-2.187	-0.0010758	492.24440880841286	37.786	0.3567	37.786	37.556	37.913	0					8	6	2	0	0	0	0.99916	1	12749	12749		4.4062	1.5629	1	718620	+		26658	19358	19129	19283	26105	26105					-0.007910546886250813
KQIFNKQLPS	10	Unmodified	_KQIFNKQLPS_					0	0	0			REV__tr|U7T5W4|U7T5W4_FUSNUVRR-NUCdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00109PE=4SV=1	REV__tr|U7T5W4|U7T5W4_FUSNUVRR-NUCdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00109PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	602.248779296875	2	601.84823	1201.68191	-0.2955	-0.00017785	0.68474	0.00041211	0.38924	0.00023426	601.8486215921913	52.111	0.45741	52.111	51.879	52.336	0					21	8	3	0	0	0	0.90513	1	18508	18508		12.241	0	1	4538300	+		26659	28841	19130	19284	26106	26106					0.0891336532281457
KQIFNKQLPS	10	Unmodified	_KQIFNKQLPS_					0	0	0			REV__tr|U7T5W4|U7T5W4_FUSNUVRR-NUCdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00109PE=4SV=1	REV__tr|U7T5W4|U7T5W4_FUSNUVRR-NUCdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00109PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	602.2481079101562	2	601.84823	1201.68191	-0.6541	-0.00039367	0.090366	5.4387E-05	-0.56373	-0.00033928	601.8483500981428	51.334	0.45654	52.087	51.864	52.321	0.75225					19	8	3	0	0	0	0.70972	1	19308	19308		13.042	4.2971	1	4653700	+		26660	28841	19130	19284	26107	26107					0.0891336532281457
KQIFNKQLPS	10	Unmodified	_KQIFNKQLPS_					0	0	0			REV__tr|U7T5W4|U7T5W4_FUSNUVRR-NUCdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00109PE=4SV=1	REV__tr|U7T5W4|U7T5W4_FUSNUVRR-NUCdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00109PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	601.84823	1201.68191	-0.6541	-0.00039367	0.090366	5.4387E-05	-0.56373	-0.00033928	601.8483500981428	51.334	0.45654	52.087	51.864	52.321	0.75225	-0.011963	-0.00038903	NaN	13.042	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4653700	+		26661	28841	19130	19284							0.0891336532281457
KQIKHIPNK	9	Unmodified	_KQIKHIPNK_					0	0	0			REV__LRRN1|p.E280K|1|0.16|ENSG00000175928|chr3:3845479-3845479|G/A|missense_variant	REV__LRRN1|p.E280K|1|0.16|ENSG00000175928|chr3:3845479-3845479|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	369.6135559082031	3	369.232864	1104.67676	0.44071	0.00016272	-0.37567	-0.00013871	0.065035	2.4013E-05	369.23263399597374	38.74	0.30569	38.74	38.475	38.78	0					7	5	2	0	0	0	0.74875	1	13179	13179		10.8	3.1906	1	1279400	+		26662	26960	19131	19285	26108	26108					0.12861106250829835
KQIKPTLRA	9	Unmodified	_KQIKPTLRA_					0	0	0			REV__ENSG00000141428|ENST00000592875|C18orf21	REV__ENSG00000141428|ENST00000592875|C18orf21	MSMS	A375_MHC_IP_R2	2	352.2930603027344	3	352.229231	1053.66586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.134	1	29.832	29.332	30.332	0.69872								0	0	0	0.15386	1	10149	10149		15.248	3.0737	1		+		26663	19262	19132	19286	26109	26109					0.14117703876559062
KQIPISDHW	9	Unmodified	_KQIPISDHW_					0	0	0		ENSG00000139318|ENST00000279488|DUSP6;DUSP6|p.S328Ifs*6|1|0.61|ENSG00000139318|chr12:89349418-89349419|-/T|frameshift_variant;ENSG00000130829|ENST00000342782|DUSP9;nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7	ENSG00000139318|ENST00000279488|DUSP6;nc|ENSG00000164086|Q16829-2|DUSP7	ENSG00000139318|ENST00000279488|DUSP6	MULTI-MSMS	A375_MHC_IP_R1	1	562.698486328125	2	562.298373	1122.58219	-0.28601	-0.00016082	-0.0082389	-4.6327E-06	-0.29424	-0.00016545	562.298338010616	42.605	0.55565	42.605	42.336	42.891	0					26	10	4	0	0	0	0.0078915	1	14756	14756		168.66	122.64	1	14678000			26664	5068;6775	19133	19287	26110	26110					0.02580547708839731
KQIPISDHW	9	Unmodified	_KQIPISDHW_					0	0	0		ENSG00000139318|ENST00000279488|DUSP6;DUSP6|p.S328Ifs*6|1|0.61|ENSG00000139318|chr12:89349418-89349419|-/T|frameshift_variant;ENSG00000130829|ENST00000342782|DUSP9;nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7	ENSG00000139318|ENST00000279488|DUSP6;nc|ENSG00000164086|Q16829-2|DUSP7	ENSG00000139318|ENST00000279488|DUSP6	MULTI-MSMS	A375_MHC_IP_R1	1	375.9359130859375	3	375.201341	1122.58219	0.49528	0.00018583	0.00052285	1.9617E-07	0.4958	0.00018603	375.20132447630164	42.592	0.40388	42.592	42.386	42.79	0					16	7	3	0	0	0	0.067501	1	14790	14790		51.63	40.83	1	2748700			26665	5068;6775	19133	19287	26111	26111					0.02580547708839731
KQIPISDHW	9	Unmodified	_KQIPISDHW_					0	0	0		ENSG00000139318|ENST00000279488|DUSP6;DUSP6|p.S328Ifs*6|1|0.61|ENSG00000139318|chr12:89349418-89349419|-/T|frameshift_variant;ENSG00000130829|ENST00000342782|DUSP9;nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7	ENSG00000139318|ENST00000279488|DUSP6;nc|ENSG00000164086|Q16829-2|DUSP7	ENSG00000139318|ENST00000279488|DUSP6	MULTI-MSMS	A375_MHC_IP_R2	2	562.6978759765625	2	562.298373	1122.58219	-0.57806	-0.00032504	-0.16718	-9.4004E-05	-0.74524	-0.00041905	562.298309591734	41.791	0.56219	42.566	42.35	42.913	0.77451					24	10	4	0	0	0	0.010194	1	15510	15510		176.84	130.82	1	16094000			26666	5068;6775	19133	19287	26112	26112					0.02580547708839731
KQIPISDHW	9	Unmodified	_KQIPISDHW_					0	0	0		ENSG00000139318|ENST00000279488|DUSP6;DUSP6|p.S328Ifs*6|1|0.61|ENSG00000139318|chr12:89349418-89349419|-/T|frameshift_variant;ENSG00000130829|ENST00000342782|DUSP9;nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7	ENSG00000139318|ENST00000279488|DUSP6;nc|ENSG00000164086|Q16829-2|DUSP7	ENSG00000139318|ENST00000279488|DUSP6	MULTI-MSMS	A375_MHC_IP_R2	2	375.6011962890625	3	375.201341	1122.58219	0.28931	0.00010855	-0.40741	-0.00015286	-0.1181	-4.4313E-05	375.2011327689561	41.786	0.66372	42.56	42.249	42.913	0.77451					24	12	3	0	0	0	0.11296	1	15539	15539		43.772	30.158	1	3119000			26667	5068;6775	19133	19287	26113	26113					0.02580547708839731
KQKILLETQE	10	Unmodified	_KQKILLETQE_					0	0	0			REV__tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	REV__tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	411.2791748046875	3	410.574844	1228.7027	0.095752	3.9313E-05	0.024668	1.0128E-05	0.12042	4.9442E-05	410.9091834831518	23.1	0.25163	23.1	22.924	23.176	0					6	4	2	0	0	0	0.66275	1	6251	6251		25.997	0	1	2912000	+		26668	28186	19134	19288	26114	26114					0.09749910911796178
KQKLSKRRKLI	11	Unmodified	_KQKLSKRRKLI_					0	0	0			REV__nc|ENSG00000188042|P56559|ARL4C	REV__nc|ENSG00000188042|P56559|ARL4C	MSMS	A375_MHC_IP_R1	1	699.4491577148438	2	699.474995	1396.93544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.03	1	119.03	118.53	119.53	0								0	0	0	0.16353	1	43930	43930		0.35063	0	1		+		26669	22069	19135	19289	26115	26115					0.25284637492927686
KQKMLVRYRSF	11	Unmodified	_KQKMLVRYRSF_					0	0	0			REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MSMS	A375_MHC_IP_R1	1	728.4861450195312	2	728.416288	1454.81802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.408	1	38.408	37.908	38.908	0								0	0	0	0.16307	1	13027	13027		2.7352	1.4057	1		+		26670	22295	19136	19290	26116	26116					0.1088073656180768
KQKPKQIS	8	Unmodified	_KQKPKQIS_					0	0	0		ENST00000471613.1_1_1:161068499-161069114:+|nuORF;nc|ENSG00000162755|Q8NEP7-3|KLHDC9	ENST00000471613.1_1_1:161068499-161069114:+|nuORF	ENST00000471613.1_1_1:161068499-161069114:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	479.17364501953125	2	478.798009	955.581465	-0.96399	-0.00046156	0.21235	0.00010167	-0.75164	-0.00035989	478.7980438585461	33.5	0.30513	34.253	34.043	34.348	0.75225					8	5	2	0	0	0	0.88903	1	12041	12041		30.637	10.183	1	1577800			26671	12356	19137	19291	26117	26117					0.10189753059808027
KQKRKLDR	8	Unmodified	_KQKRKLDR_					0	0	0			REV__ENST00000481249.5_1_20:13765843-13779121:+|nuORF	REV__ENST00000481249.5_1_20:13765843-13779121:+|nuORF	MSMS	A375_MHC_IP_R2	2	357.913330078125	3	357.896363	1070.66726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.846	1	23.476	22.976	23.976	0.63014								0	0	0	0.16876	1	7281	7281		11.495	3.8858	1		+		26672	17152	19138	19292	26118	26118					0.13475337965292056
KQKTLKKNIV	10	Unmodified	_KQKTLKKNIV_					0	0	0			REV__ENSG00000196074|ENST00000357552|SYCP2	REV__ENSG00000196074|ENST00000357552|SYCP2	MULTI-MSMS	A375_MHC_IP_R1	1	400.99951171875	3	400.599324	1198.77614	0.084985	3.4045E-05	-0.14897	-5.9678E-05	-0.063987	-2.5633E-05	400.59930898675776	22.319	0.61062	22.319	22.013	22.623	0					28	11	3	0	0	0	0.71946	1	5977	5977		3.5871	0.26742	1	4175300	+		26673	22155	19139	19293	26119	26119					0.18470504144943334
KQKTLKKNIV	10	Unmodified	_KQKTLKKNIV_					0	0	0			REV__ENSG00000196074|ENST00000357552|SYCP2	REV__ENSG00000196074|ENST00000357552|SYCP2	MULTI-MSMS	A375_MHC_IP_R1	1	401.33380126953125	3	400.599324	1198.77614	-0.30055	-0.0001204	0.16651	6.6703E-05	-0.13404	-5.3698E-05	400.59936676639154	23.132	1.2156	23.132	22.673	23.889	0					68	23	5	0	0	0	0.70741	1	6233	6233		8.9762	3.1081	1	175150000	+		26674	22155	19139	19293	26120	26120					0.18470504144943334
KQKTLKKNIV	10	Unmodified	_KQKTLKKNIV_					0	0	0			REV__ENSG00000196074|ENST00000357552|SYCP2	REV__ENSG00000196074|ENST00000357552|SYCP2	MULTI-MSMS	A375_MHC_IP_R2	2	400.99908447265625	3	400.599324	1198.77614	-0.35996	-0.0001442	0.015454	6.1908E-06	-0.34451	-0.00013801	400.5992939522498	20.341	2.0788	20.952	20.197	22.276	0.61029					116	40	5	0	0	0	0.70741	2	6417	6417;6440		8.9762	2.7419	1	56894000	+		26675	22155	19139	19293	26121;26122	26121					0.18470504144943334
KQKTLKKNIV	10	Unmodified	_KQKTLKKNIV_					0	0	0			REV__ENSG00000196074|ENST00000357552|SYCP2	REV__ENSG00000196074|ENST00000357552|SYCP2	MULTI-MSMS	A375_MHC_IP_R2	2	400.9992370605469	3	400.599324	1198.77614	-0.38151	-0.00015283	0.22004	8.8146E-05	-0.16147	-6.4685E-05	400.5993012121386	22.815	1.5315	23.445	22.245	23.777	0.63014					52	29	4	0	0	0	0.71946	2	6939	6939;7204		3.5871	0.74377	1	18014000	+		26676	22155	19139	19293	26123;26124	26123					0.18470504144943334
KQKTLKKNIV	10	Unmodified	_KQKTLKKNIV_					0	0	0			REV__ENSG00000196074|ENST00000357552|SYCP2	REV__ENSG00000196074|ENST00000357552|SYCP2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	400.599324	1198.77614	0.084985	3.4045E-05	-0.14897	-5.9678E-05	-0.063987	-2.5633E-05	400.59930898675776	22.319	0.61062	22.319	22.013	22.623	0	0	0	NaN	3.5871	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4175300	+		26677	22155	19139	19293							0.18470504144943334
KQKTLKKNIV	10	Unmodified	_KQKTLKKNIV_					0	0	0			REV__ENSG00000196074|ENST00000357552|SYCP2	REV__ENSG00000196074|ENST00000357552|SYCP2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	400.599324	1198.77614	-0.38151	-0.00015283	0.22004	8.8146E-05	-0.16147	-6.4685E-05	400.5993012121386	22.815	1.5315	23.445	22.245	23.777	0.63014	0.15618	3.569E-05	NaN	8.9762	52	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18014000	+		26678	22155	19139	19293							0.18470504144943334
KQKVVKLNDSV	11	Unmodified	_KQKVVKLNDSV_					0	0	0			REV__tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1	REV__tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	419.9822692871094	3	419.922355	1256.74524	0.12688	5.3282E-05	-0.2458	-0.00010322	-0.11891	-4.9935E-05	419.9222314550387	28.465	0.45531	28.465	28.188	28.643	0					16	8	3	0	0	0	0.73016	1	8862	8862		8.7518	2.5174	1	8922300	+		26679	28560	19140	19294	26125	26125					0.1271330604004106
KQLDKMGF	8	Unmodified	_KQLDKMGF_					0	0	0		ENST00000497251.1_1_1:36605278-36614725:-|nuORF;ENSG00000054116|ENST00000373166|TRAPPC3;ENST00000462715.1_1_1:36603336-36605749:-|nuORF	ENST00000497251.1_1_1:36605278-36614725:-|nuORF	ENST00000497251.1_1_1:36605278-36614725:-|nuORF	MSMS	A375_MHC_IP_R2	2	483.71563720703125	2	483.757495	965.500437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.673	1	29.372	28.872	29.872	0.69872								0	0	0	0.16876	1	9935	9935		14.582	0	1				26680	1253	19141	19295	26126	26126					0.01630729025407618
KQLDLLFSV	9	Unmodified	_KQLDLLFSV_					0	0	0		nc|ENSG00000163814|Q9H5V8-2|CDCP1;ENSG00000163814|ENST00000296129|CDCP1	nc|ENSG00000163814|Q9H5V8-2|CDCP1	nc|ENSG00000163814|Q9H5V8-2|CDCP1	MULTI-SECPEP	A375_MHC_IP_R1	1	532.213134765625	2	531.813325	1061.6121	-0.37505	-0.00019946	0.14629	7.7797E-05	-0.22877	-0.00012166	531.8134007016328	109.04	0.60872	109.04	108.66	109.27	0					22	11	3	0	0	0	0.087712	1	40008	40008		75.761	6.6559	1	1590500			26681	6727	19142	19296	26127	26127					0.08375486654199449
KQLDYFSE	8	Unmodified	_KQLDYFSE_					0	0	0		nc|ENSG00000182670|P53804-3|TTC3;nc|ENSG00000182670|P53804-2|TTC3;ENSG00000182670|ENST00000418766|TTC3;ENST00000487711.5_1_21:38529006-38530503:+|nuORF	nc|ENSG00000182670|P53804-3|TTC3	nc|ENSG00000182670|P53804-3|TTC3	MSMS	A375_MHC_IP_R2	2	515.2211303710938	2	515.248015	1028.48148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.058	1	91.793	91.293	92.293	0.7345								0	0	0	0.16876	1	34648	34648		18.135	0	1				26682	8429	19143	19297	26128	26128					-0.03162529064661612
KQLEGAPFRI	10	Unmodified	_KQLEGAPFRI_					0	0	0			REV__ENSG00000102174|ENST00000379374|PHEX	REV__ENSG00000102174|ENST00000379374|PHEX	MULTI-SECPEP	A375_MHC_IP_R2	2	386.28887939453125	3	386.892507	1157.65569	-0.20386	-7.8873E-05	-0.50939	-0.00019708	-0.71325	-0.00027595	386.8924451192365	65.192	0.40547	65.931	65.613	66.018	0.73812					10	7	2	0	0	0	0.83355	1	24669	24669		14.957	5.4132	1	573350	+		26683	17209	19144	19298	26129	26129					0.08317096151336045
KQLEHYLPI	9	Unmodified	_KQLEHYLPI_					0	0	0			REV__ENST00000351960.10_2_11:71733400-71735336:-|nuORF	REV__ENST00000351960.10_2_11:71733400-71735336:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	381.2853088378906	3	380.885241	1139.63389	0.48601	0.00018512	-0.12855	-4.8964E-05	0.35746	0.00013615	380.8849599469384	37.334	0.55988	37.334	36.945	37.505	0					21	10	3	0	0	0	0.69884	1	12609	12609		7.1017	0	1	3040400	+		26684	23798	19145	19299	26130	26130					0.06966291402750358
KQLPKPRTSL	10	Unmodified	_KQLPKPRTSL_					0	0	0		ENSG00000187550|ENST00000413299|SBK2	ENSG00000187550|ENST00000413299|SBK2	ENSG00000187550|ENST00000413299|SBK2	MULTI-MSMS	A375_MHC_IP_R2	2	390.3114929199219	3	389.91179	1166.71354	-0.91201	-0.0003556	0.4117	0.00016053	-0.50031	-0.00019508	389.9119028663622	28.891	1.2512	29.59	29.183	30.434	0.69872					44	24	2	0	0	0	0.70741	1	9961	9961		8.9762	0.53194	1	18902000			26685	8835	19146	19300	26131	26131					0.13685358076759258
KQLQTELLK	9	Unmodified	_KQLQTELLK_					0	0	0			REV__ENST00000555071.5_1_14:75349324-75357795:+|nuORF	REV__ENST00000555071.5_1_14:75349324-75357795:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	550.745361328125	2	550.837331	1099.66011	-0.449	-0.00024733	-0.39789	-0.00021917	-0.8469	-0.0004665	550.8370346758617	62.913	0.40929	62.913	62.66	63.069	0					11	7	2	0	0	0	0.50702	1	22649	22649		19.257	8.4331	1	913190	+		26686	26092	19147	19301	26132	26132					0.11426560574227551
KQLRESVIKY	10	Unmodified	_KQLRESVIKY_					0	0	0		nc|ENSG00000114487|Q86VD1-2|MORC1;ENSG00000114487|ENST00000232603|MORC1;MORC1|p.R910Kfs*4|1|0.49|ENSG00000114487|chr3:108963485-108963486|TT/-|frameshift_variant	nc|ENSG00000114487|Q86VD1-2|MORC1	nc|ENSG00000114487|Q86VD1-2|MORC1	MSMS	A375_MHC_IP_R1	1	421.95068359375	3	421.918834	1262.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.381	1	32.381	31.881	32.881	0								0	0	0	0.1511	1	10457	10457		15.739	0	1				26687	3224	19148	19302	26133	26133					0.11381323385603537
KQLSHIKKI	9	Unmodified	_KQLSHIKKI_					0	0	0		ENST00000435844.3_2_20:18548090-18550131:+|nuORF	ENST00000435844.3_2_20:18548090-18550131:+|nuORF	ENST00000435844.3_2_20:18548090-18550131:+|nuORF	MSMS	A375_MHC_IP_R1	1	365.6088562011719	3	365.572998	1093.69716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.799	1	31.799	31.299	32.299	0								0	0	0	0.15253	1	10214	10214		17.443	6.6431	1				26688	11918	19149	19303	26134	26134					0.15406276910653105
KQMEQISQFL	10	Unmodified	_KQMEQISQFL_					0	0	0		ENSG00000144834|ENST00000478951|TAGLN3;ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159889062-159890299:-|nuORF	ENSG00000144834|ENST00000478951|TAGLN3;ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-SECPEP	A375_MHC_IP_R1	1	626.723388671875	2	626.323731	1250.63291	-0.48859	-0.00030602	0.15522	9.7217E-05	-0.33337	-0.0002088	626.3241424101265	79.389	0.51438	79.389	79.111	79.625	0					19	9	3	0	0	0	0.41513	1	28991	28991		53.404	25.775	1	1911900			26689	6324;5520	19150	19304	26135	26135					0.017617089715486145
KQMEQISQFL	10	Unmodified	_KQMEQISQFL_					0	0	0		ENSG00000144834|ENST00000478951|TAGLN3;ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159889062-159890299:-|nuORF	ENSG00000144834|ENST00000478951|TAGLN3;ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MSMS	A375_MHC_IP_R2	2	626.723876953125	2	626.323731	1250.63291	-0.75475	-0.00047272	0.13544	8.4831E-05	-0.61931	-0.00038789	626.3239484059665	78.552	0.50731	79.297	79.033	79.54	0.74474					18	9	3	0	0	0	0.17669	1	29845	29845		51.63	22.548	1	2667000			26690	6324;5520	19150	19304	26136	26136					0.017617089715486145
KQMEQISQFL	10	Oxidation (M)	_KQM(Oxidation (M))EQISQFL_		KQM(1)EQISQFL		KQM(59)EQISQFL	0	0	1		ENSG00000144834|ENST00000478951|TAGLN3;ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159889062-159890299:-|nuORF	ENSG00000144834|ENST00000478951|TAGLN3;ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-SECPEP	A375_MHC_IP_R2	2	634.7208862304688	2	634.321188	1266.62782	-0.87306	-0.0005538	0.15624	9.9108E-05	-0.71681	-0.00045469	634.822647228206	65.177	0.50811	65.915	65.664	66.172	0.73811					21	9	3	0	0	0	0.32288	1	24734	24734		59.368	11.62	1	1809900			26691	6324;5520	19150	19305	26137	26137		294			0.005174051089170462
KQMEQISQFL	10	Oxidation (M)	_KQM(Oxidation (M))EQISQFL_					0	0	1		ENSG00000144834|ENST00000478951|TAGLN3;ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159889062-159890299:-|nuORF	ENSG00000144834|ENST00000478951|TAGLN3;ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MATCH	A375_MHC_IP_R1	1		2	634.321188	1266.62782	-0.82846	-0.00052551	0.57347	0.00036376	-0.25499	-0.00016174	634.3216275770969	65.995	0.71097	65.995	65.717	66.428	0	0.040026	0.00024488	NaN	59.368	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1443800			26692	6324;5520	19150	19305				294			0.005174051089170462
KQMMEKAEW	9	Unmodified	_KQMMEKAEW_					0	0	0		PIK3R4|p.N967K|1|0.12|ENSG00000196455|chr3:130705592-130705592|A/C|missense_variant	PIK3R4|p.N967K|1|0.12|ENSG00000196455|chr3:130705592-130705592|A/C|missense_variant	PIK3R4|p.N967K|1|0.12|ENSG00000196455|chr3:130705592-130705592|A/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	590.2238159179688	2	590.778102	1179.54165	-0.92837	-0.00054846	3.027	0.0017883	2.0986	0.0012398	591.2824279172601	59.78	0.70926	60.527	60.299	61.008	0.74714					26	13	3	0	0	0	0.51106	1	22688	22688		19.257	3.4098	1	5653200			26693	15177	19151	19306	26138	26138					-0.04093877997433992
KQNEMSLDYI	10	Unmodified	_KQNEMSLDYI_					0	0	0			REV__ENSG00000165105|ENST00000376447|RASEF	REV__ENSG00000165105|ENST00000376447|RASEF	MULTI-SECPEP	A375_MHC_IP_R2	2	414.600341796875	3	414.200789	1239.58054	-0.22914	-9.4909E-05	-1.0014	-0.00041477	-1.2305	-0.00050968	414.2003281164315	37.998	0.5136	38.773	38.534	39.047	0.77451					18	9	3	0	0	0	0.91909	1	14006	14006		8.4443	0	1	3039300	+		26694	20547	19152	19307	26139	26139					-0.029668741620525907
KQPAIISQL	9	Unmodified	_KQPAIISQL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	A375_MHC_IP_R1	1	499.7054748535156	2	499.305667	996.596781	-0.3572	-0.00017835	0.37279	0.00018614	0.015595	7.7868E-06	499.3058298280733	59.862	0.45798	59.862	59.651	60.109	0					15	8	2	0	0	0	0.14606	1	21552	21552		63.961	3.8866	1	2355800			26695	4716	19153	19308	26140	26140					0.09834619856997051
KQPAIISQL	9	Unmodified	_KQPAIISQL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	A375_MHC_IP_R2	2	499.4599609375	2	499.305667	996.596781	-0.92815	-0.00046343	-0.25658	-0.00012811	-1.1847	-0.00059154	499.30544775505143	58.902	0.55825	59.65	59.438	59.996	0.74714					19	10	3	0	0	0	0.025235	1	22300	22300		107.19	21.915	1	2027700			26696	4716	19153	19308	26141	26141					0.09834619856997051
KQPDVKHVF	9	Unmodified	_KQPDVKHVF_					0	0	0			REV__NIPSNAP1|p.R55Q|1|0.15|ENSG00000184117|chr22:29570467-29570467|C/T|missense_variant	REV__NIPSNAP1|p.R55Q|1|0.15|ENSG00000184117|chr22:29570467-29570467|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	549.7083129882812	2	549.308741	1096.60293	-0.49949	-0.00027437	-0.21762	-0.00011954	-0.7171	-0.00039391	549.3085537510839	25.243	0.20265	25.243	25.154	25.357	0					5	3	2	0	0	0	0.53748	1	7367	7367		30.637	5.2372	1	3493700	+		26697	27606	19154	19309	26142	26142					0.058491380885243416
KQPILHFIR	9	Unmodified	_KQPILHFIR_					0	0	0			REV__ENST00000585090.1_1_18:3249531-3249615:+|nuORF	REV__ENST00000585090.1_1_18:3249531-3249615:+|nuORF	MSMS	A375_MHC_IP_R2	2	384.6178894042969	3	384.573109	1150.6975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.93	1	19.533	19.033	20.033	0.60308								0	0	0	0.15486	1	5673	5673		7.1017	0.064636	1		+		26698	26374	19155	19310	26143	26143					0.1281769663050909
KQPLPKRV	8	Unmodified	_KQPLPKRV_					0	0	0		ENSG00000129654|ENST00000322957|FOXJ1	ENSG00000129654|ENST00000322957|FOXJ1	ENSG00000129654|ENST00000322957|FOXJ1	MULTI-MSMS	A375_MHC_IP_R1	1	483.7157287597656	2	483.316369	964.618185	-0.70005	-0.00033834	0.05957	2.8791E-05	-0.64048	-0.00030955	483.3163848715507	29.662	1.3509	29.662	29.302	30.653	0					43	26	2	0	0	0	0.75805	1	9587	9587		18.135	0	1	16570000			26699	4203	19156	19311	26144	26144					0.1344604967637224
KQPVARLASFV	11	Unmodified	_KQPVARLASFV_					0	0	0			REV__ENST00000265870.7_1_10:70248298-70276562:-|nuORF	REV__ENST00000265870.7_1_10:70248298-70276562:-|nuORF	MSMS	A375_MHC_IP_R2	2	405.952392578125	3	405.91179	1214.71354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.461	1	31.179	30.679	31.679	0.71857								0	0	0	0.16269	1	10708	10708		4.7159	0.52642	1		+		26700	18222	19157	19312	26145	26145					0.11477358076740529
KQQIIQTL	8	Unmodified	_KQQIIQTL_					0	0	0			REV__TRIP11|p.L1184Ffs*17|1|0.06|ENSG00000100815|chr14:92004424-92004425|-/CCGGTCTTTTGTGTGTGCA|frameshift_variant	REV__TRIP11|p.L1184Ffs*17|1|0.06|ENSG00000100815|chr14:92004424-92004425|-/CCGGTCTTTTGTGTGTGCA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	486.1308288574219	2	486.297842	970.581131	-0.58112	-0.0002826	-0.66787	-0.00032478	-1.249	-0.00060738	486.2976823950368	29.105	0.35602	29.105	28.845	29.201	0					9	6	2	0	0	0	0.972	1	9035	9035		4.3292	0.38484	1	1334000	+		26701	17122	19158	19313	26146	26146					0.09466333339958055
KQQLPPVE	8	Unmodified	_KQQLPPVE_					0	0	0			REV__ENST00000540714.1_1_9:5919686-5933837:-|nuORF	REV__ENST00000540714.1_1_9:5919686-5933837:-|nuORF	MSMS	A375_MHC_IP_R2	2	469.6679382324219	2	469.768917	937.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.639	1	18.235	17.735	18.735	0.59616								0	0	0	0.16876	1	5198	5198		0.69038	0.088878	1		+		26702	21752	19159	19314	26147	26147					0.052020714145328384
KQQRIYDALA	10	Unmodified	_KQQRIYDALA_					0	0	0			REV__ENSG00000023318|ENST00000262455|ERP44	REV__ENSG00000023318|ENST00000262455|ERP44	MULTI-MSMS	A375_MHC_IP_R2	2	402.6228332519531	3	402.559417	1204.65642	-0.31773	-0.00012791	-0.64923	-0.00026136	-0.96697	-0.00038926	402.8944071414567	20.238	0.71089	20.848	20.499	21.21	0.61029					39	13	4	0	0	0	0.70174	1	6257	6257		11.518	0.71837	1	8885600	+		26703	16278	19160	19315	26148	26148					0.06227890800369096
KQREKQQME	9	Unmodified	_KQREKQQME_					0	0	0		nc|ENSG00000102001|O60840-7|CACNA1F;nc|ENSG00000102001|O60840-4|CACNA1F;ENSG00000102001|ENST00000323022|CACNA1F;nc|ENSG00000102001|O60840|CACNA1F;nc|ENSG00000102001|O60840-5|CACNA1F;nc|ENSG00000102001|O60840-6|CACNA1F	nc|ENSG00000102001|O60840-7|CACNA1F	nc|ENSG00000102001|O60840-7|CACNA1F	MULTI-MSMS	A375_MHC_IP_R1	1	602.248779296875	2	602.808779	1203.60301	-0.32699	-0.00019711	1.5887	0.00095766	1.2617	0.00076055	602.8098304221899	52.2	0.45596	52.2	51.982	52.438	0					19	8	3	0	0	0	0.38603	1	18508	18508		25.399	9.5521	1	4805400			26704	2346	19161	19316	26149	26149					0.009347700262196668
KQRFMFNI	8	Unmodified	_KQRFMFNI_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-SECPEP	A375_MHC_IP_R2	2	543.02734375	2	542.292037	1082.56952	-0.75515	-0.00040951	-1.2004	-0.00065099	-1.9556	-0.0010605	542.2914807522038	84.121	0.81882	84.86	84.254	85.073	0.73962					20	15	2	0	0	0	0.8824	1	31744	31744		30.225	12.09	1	2895500			26705	3005	19162	19317	26150	26150					0.03153813044968956
KQRKAAFKE	9	Unmodified	_KQRKAAFKE_					0	0	0		ENSG00000142634|ENST00000375980|EFHD2	ENSG00000142634|ENST00000375980|EFHD2	ENSG00000142634|ENST00000375980|EFHD2	MULTI-MSMS	A375_MHC_IP_R2	2	369.62066650390625	3	369.220735	1104.64038	-0.0087308	-3.2236E-06	-0.30223	-0.00011159	-0.31096	-0.00011481	369.22066244026405	23.677	0.30535	24.308	24.129	24.435	0.63014					7	5	2	0	0	0	0.75695	1	7694	7694		1.9064	0.1641	1	3512700			26706	5321	19163	19318	26151	26151					0.09224229354140334
KQRNRWQKRSL	11	Unmodified	_KQRNRWQKRSL_					0	0	0			REV__ENSG00000132275|ENST00000254605|RRP8	REV__ENSG00000132275|ENST00000254605|RRP8	MSMS	A375_MHC_IP_R2	2	500.4481201171875	3	500.627047	1498.85931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.675	1	57.425	56.925	57.925	0.75015								0	0	0	0.16302	1	21424	21424		1.2148	0.10508	1		+		26707	18643	19164	19319	26152	26152					0.12983633645512782
KQRRWQRQKTF	11	Unmodified	_KQRRWQRQKTF_					0	0	0		nc|ENSG00000203943|Q5VXD3-3|SAMD13;ENST00000506295.1_2_1:84810518-84815454:+|nuORF	nc|ENSG00000203943|Q5VXD3-3|SAMD13	nc|ENSG00000203943|Q5VXD3-3|SAMD13	MSMS	A375_MHC_IP_R1	1	781.5816650390625	2	781.444757	1560.87496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.817	1	95.817	95.317	96.317	0								0	0	0	0.16302	1	35217	35217		2.9952	2.6882	1				26708	12854	19165	19320	26153	26153					0.11695920162514994
KQRRWQRQKTF	11	Unmodified	_KQRRWQRQKTF_					0	0	0		nc|ENSG00000203943|Q5VXD3-3|SAMD13;ENST00000506295.1_2_1:84810518-84815454:+|nuORF	nc|ENSG00000203943|Q5VXD3-3|SAMD13	nc|ENSG00000203943|Q5VXD3-3|SAMD13	MSMS	A375_MHC_IP_R1	1	781.8424072265625	2	781.444757	1560.87496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.548	1	96.548	96.048	97.048	0								0	0	0	0.16337	1	35481	35481		1.1933	0.88631	1				26709	12854	19165	19320	26154	26154					0.11695920162514994
KQRRWQRQKTF	11	Unmodified	_KQRRWQRQKTF_					0	0	0		nc|ENSG00000203943|Q5VXD3-3|SAMD13;ENST00000506295.1_2_1:84810518-84815454:+|nuORF	nc|ENSG00000203943|Q5VXD3-3|SAMD13	nc|ENSG00000203943|Q5VXD3-3|SAMD13	MSMS	A375_MHC_IP_R2	2	781.8425903320312	2	781.444757	1560.87496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.909	1	96.659	96.159	97.159	0.75045								0	0	0	0.16337	1	36424	36424		1.1933	0.88631	1				26710	12854	19165	19320	26155	26155					0.11695920162514994
KQRVKMGRF	9	Unmodified	_KQRVKMGRF_					0	0	0			REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	383.9231872558594	3	383.893965	1148.66007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.634	1	23.634	23.134	24.134	0								0	0	0	0.15486	1	6529	6529		4.897	0.36815	1		+		26711	15465	19166	19321	26156	26156					0.09168282093241942
KQTDEKPRSDV	11	Unmodified	_KQTDEKPRSDV_					0	0	0			REV__ENSG00000154803|ENST00000285071|FLCN	REV__ENSG00000154803|ENST00000285071|FLCN	MULTI-SECPEP	A375_MHC_IP_R1	1	652.2356567382812	2	651.836048	1301.65754	-0.53661	-0.00034978	-0.42628	-0.00027787	-0.96289	-0.00062765	651.8358630652016	41.071	0.35195	41.071	40.863	41.215	0					14	6	3	0	0	0	0.98336	1	14155	14155		29.841	29.841	1	4124300	+		26712	19899	19167	19322	26157	26157					0.01878060378612645
KQTITLWKK	9	Unmodified	_KQTITLWKK_					0	0	0		ENST00000367701.9_1_1:173838126-173839340:+|nuORF;ENST00000427304.5_1_1:173837505-173839340:+|nuORF	ENST00000367701.9_1_1:173838126-173839340:+|nuORF	ENST00000367701.9_1_1:173838126-173839340:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	573.4075317382812	2	573.355691	1144.69683	-0.59256	-0.00033975	-0.25932	-0.00014868	-0.85189	-0.00048843	573.3560221392398	142.79	0.55496	142.79	142.59	143.14	0					15	10	2	0	0	0	0.75764	1	54754	54754		1.8442	0.36234	1	1206700			26713	11100	19168	19323	26158	26158					0.13026857190789087
KQTLKQKW	8	Unmodified	_KQTLKQKW_					0	0	0		nc|ENSG00000115165|O60759-2|CYTIP;ENSG00000115165|ENST00000264192|CYTIP	nc|ENSG00000115165|O60759-2|CYTIP	nc|ENSG00000115165|O60759-2|CYTIP	MULTI-SECPEP	A375_MHC_IP_R1	1	354.2815246582031	3	353.881831	1058.62366	0.011397	4.0332E-06	-0.59869	-0.00021187	-0.5873	-0.00020783	353.8817331256834	42.24	0.55507	42.24	41.932	42.487	0					15	10	3	0	0	0	0.972	1	14674	14674		0.40072	0.1317	1	1770000			26714	3277	19169	19324	26159	26159					0.09669728468179528
KQTQKLQDM	9	Unmodified	_KQTQKLQDM_					0	0	0		ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2;ENST00000467401.1_1_9:96070551-96082671:+|nuORF	ENSG00000165238|ENST00000427277|WNK2	ENSG00000165238|ENST00000427277|WNK2	MULTI-SECPEP	A375_MHC_IP_R2	2	560.3824462890625	2	560.294973	1118.57539	-1.0158	-0.00056918	-0.66877	-0.00037471	-1.6846	-0.00094388	560.2927339549901	57.231	0.66231	57.98	57.661	58.324	0.74927					22	12	3	0	0	0	0.65623	1	21611	21611		23.79	3.3752	1	866170			26715	6929	19170	19325	26160	26160					0.020848667659493003
KQVQKIQK	8	Unmodified	_KQVQKIQK_					0	0	0			REV__KIF20B|p.E1695Gfs*11|1|0.6|ENSG00000138182|chr10:89768376-89768377|-/A|frameshift_variant	REV__KIF20B|p.E1695Gfs*11|1|0.6|ENSG00000138182|chr10:89768376-89768377|-/A|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	499.7073669433594	2	500.319109	998.623664	-0.62204	-0.00031122	2.0755	0.0010384	1.4535	0.0007272	500.321683299132	132.21	0.80782	132.21	131.83	132.64	0					20	15	2	0	0	0	0.91495	1	50945	50945		24.674	0	1	1510900	+		26716	19074	19171	19326	26161	26161					0.1242972846819157
KQVSDLISV	9	Unmodified	_KQVSDLISV_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF;DDX5|p.R461C|1|0.21|ENSG00000108654|chr17:64500609-64500609|G/A|missense_variant	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-SECPEP	A375_MHC_IP_R1	1	494.14678955078125	2	494.787307	987.560061	-0.33638	-0.00016644	-0.33719	-0.00016684	-0.67357	-0.00033327	494.7872828737374	61.894	0.7658	61.894	61.585	62.351	0					28	14	4	0	0	0	0.03109	1	22306	22306		103.35	17.712	1	23472000			26717	2826	19172	19327	26162	26162					0.06578323240432837
KQVYFYLFKL	10	Unmodified	_KQVYFYLFKL_					0	0	0		ENSG00000108773|ENST00000225916|KAT2A;ENST00000426228.1_1_3:20082197-20142489:+|nuORF;ENSG00000114166|ENST00000263754|KAT2B	ENSG00000108773|ENST00000225916|KAT2A;ENSG00000114166|ENST00000263754|KAT2B	ENSG00000114166|ENST00000263754|KAT2B	MULTI-MSMS	A375_MHC_IP_R1	1	450.3060607910156	3	450.260308	1347.7591	-0.38567	-0.00017365	0.041784	1.8814E-05	-0.34389	-0.00015484	450.2602104537709	131.73	1.718	131.73	131.13	132.84	0					79	33	4	0	0	0	0.72416	1	50807	50807		0.62683	0.17231	1	15936000			26718	3202;2832	19173	19328	26163	26163					0.099125835391078
KQWGKDSL	8	Unmodified	_KQWGKDSL_					0	0	0		nc|ENSG999|O00370|L1_ORF2	nc|ENSG999|O00370|L1_ORF2	nc|ENSG999|O00370|L1_ORF2	MULTI-SECPEP	A375_MHC_IP_R1	1	481.660888671875	2	481.258717	960.50288	-0.43445	-0.00020908	-0.0041176	-1.9816E-06	-0.43857	-0.00021106	481.2588083794019	58.948	1.1702	58.948	58.328	59.498	0					33	22	2	0	0	0	0.972	1	21074	21074		4.756	0	1	4238600			26719	14975	19174	19329	26164	26164					0.021049007547162546
KQWRHSYTASY	11	Unmodified	_KQWRHSYTASY_					0	0	0		ENSG00000197635|ENST00000360534|DPP4	ENSG00000197635|ENST00000360534|DPP4	ENSG00000197635|ENST00000360534|DPP4	MULTI-MSMS	A375_MHC_IP_R1	1	713.9136962890625	2	713.84675	1425.67895	-0.66285	-0.00047317	-0.69243	-0.00049429	-1.3553	-0.00096746	713.8459423291634	83.76	0.50645	83.76	83.38	83.887	0					14	9	2	0	0	0	0.66366	2	30675	30675;30686		18.373	3.1246	1	2124600			26720	9181	19175	19330	26165;26166	26165					-0.01686509801993452
KQYGAIIKEP	10	Unmodified	_KQYGAIIKEP_					0	0	0			REV__tr|U7SS49|U7SS49_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01543PE=3SV=1	REV__tr|U7SS49|U7SS49_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01543PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	574.229736328125	2	573.829506	1145.64446	-0.17712	-0.00010164	0.1461	8.3834E-05	-0.031026	-1.7804E-05	573.8296331917919	50.419	2.0347	50.419	49.947	51.982	0					67	39	2	0	0	0	0.57505	1	18117	18117		22.736	0.078198	1	2233600	+		26721	28417	19176	19331	26167	26167					0.07746274057171831
KQYGNEVFL	9	Unmodified	_KQYGNEVFL_					0	0	0		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF;CCT8|p.A180V|1|0.45|ENSG00000156261|chr21:29066914-29066914|G/A|missense_variant	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-SECPEP	A375_MHC_IP_R1	1	549.6846923828125	2	549.284931	1096.55531	-0.59475	-0.00032669	-0.12494	-6.8626E-05	-0.71968	-0.00039531	549.2848490131174	58.971	0.50883	58.971	58.685	59.194	0					23	9	3	0	0	0	0.33896	1	21177	21177		61.357	6.5839	1	6215600			26722	6184	19177	19332	26168	26168					0.010894390976773138
KQYGNEVFL	9	Unmodified	_KQYGNEVFL_					0	0	0		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF;CCT8|p.A180V|1|0.45|ENSG00000156261|chr21:29066914-29066914|G/A|missense_variant	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-MSMS	A375_MHC_IP_R2	2	549.6842651367188	2	549.284931	1096.55531	-1.0537	-0.00057879	-0.099451	-5.4627E-05	-1.1532	-0.00063342	549.2848646198719	58.055	0.65899	58.804	58.528	59.187	0.74894					29	12	3	0	0	0	0.091096	1	21967	21967		52.268	4.5197	1	6635600			26723	6184	19177	19332	26169	26169					0.010894390976773138
KRAEEILRL	9	Unmodified	_KRAEEILRL_					0	0	0		nc|ENSG00000110025|Q9NRS6-2|SNX15;ENSG00000110025|ENST00000377244|SNX15;ENST00000526702.1_1_11:64805889-64807261:+|nuORF	nc|ENSG00000110025|Q9NRS6-2|SNX15	nc|ENSG00000110025|Q9NRS6-2|SNX15	MULTI-MSMS	A375_MHC_IP_R1	1	376.96807861328125	3	376.568024	1126.68224	0.33524	0.00012624	0.0035627	1.3416E-06	0.3388	0.00012758	376.5680218924741	37.139	0.45608	37.139	36.895	37.351	0					14	8	2	0	0	0	0.31609	1	12520	12520		29.437	0	1	2939300			26724	2909	19178	19333	26170	26170					0.12396785042665215
KRAFSEVEK	9	Unmodified	_KRAFSEVEK_					0	0	0			REV__ENSG00000164294|ENST00000503787|GPX8	REV__ENSG00000164294|ENST00000503787|GPX8	MSMS	A375_MHC_IP_R1	1	365.2852783203125	3	365.204862	1092.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.005	1	25.005	24.505	25.505	0								0	0	0	0.15135	1	7214	7214		14.218	0.6033	1		+		26725	20475	19179	19334	26171	26171					0.050165303632638825
KRASYILRL	9	Unmodified	_KRASYILRL_					0	0	0		ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1	ENSG00000157106|ENST00000446231|SMG1	ENSG00000157106|ENST00000446231|SMG1	MULTI-MSMS	A375_MHC_IP_R1	1	374.3048400878906	3	373.904747	1118.69241	0.34236	0.00012801	-0.1677	-6.2705E-05	0.17465	6.5304E-05	373.90473355053194	40.304	0.61066	40.304	39.999	40.609	0					18	11	2	0	0	0	0.33243	1	13836	13836		28.234	7.8191	1	6164000			26726	6228	19180	19335	26172	26172					0.13781392767873513
KRASYILRL	9	Unmodified	_KRASYILRL_					0	0	0		ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1	ENSG00000157106|ENST00000446231|SMG1	ENSG00000157106|ENST00000446231|SMG1	MULTI-MSMS	A375_MHC_IP_R2	2	373.9295654296875	3	373.904747	1118.69241	0.22365	8.3623E-05	-0.78615	-0.00029394	-0.5625	-0.00021032	374.2386881736806	39.163	0.66193	39.937	39.658	40.32	0.77451					19	12	2	0	0	0	0.62591	1	14494	14494		13.615	6.5131	1	4093700			26727	6228	19180	19335	26173	26173					0.13781392767873513
KRAVNLPRSK	10	Unmodified	_KRAVNLPRSK_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MSMS	A375_MHC_IP_R2	2	390.6482849121094	3	390.247285	1167.72002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.983	1	57.733	57.233	58.233	0.75015								0	0	0	0.15593	1	21544	21544		1.5923	0.26264	1				26728	1000	19181	19336	26174	26174					0.14287296028101082
KRAVQNQLR	9	Unmodified	_KRAVQNQLR_					0	0	0		ENST00000395442.5_1_10:55568369-55568990:-|nuORF	ENST00000395442.5_1_10:55568369-55568990:-|nuORF	ENST00000395442.5_1_10:55568369-55568990:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	371.9595947265625	3	371.559751	1111.65742	0.35033	0.00013017	-0.33483	-0.00012441	0.015505	5.7611E-06	371.5596338648282	20.054	0.6583	20.054	19.827	20.485	0					20	12	2	0	0	0	0.73141	1	5093	5093		4.1895	1.691	1	4493100			26729	11470	19182	19337	26175	26175					0.1060614995992637
KRAVQNQLR	9	Unmodified	_KRAVQNQLR_					0	0	0		ENST00000395442.5_1_10:55568369-55568990:-|nuORF	ENST00000395442.5_1_10:55568369-55568990:-|nuORF	ENST00000395442.5_1_10:55568369-55568990:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	371.559751	1111.65742	0.13709	5.0935E-05	-0.47328	-0.00017585	-0.33619	-0.00012492	371.5595766811939	19.445	0.60826	20.048	19.833	20.442	0.60308	-0.003223	-0.00010003	NaN	4.1895	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	666680			26730	11470	19182	19337							0.1060614995992637
KRDWRLTLP	9	Unmodified	_KRDWRLTLP_					0	0	0			REV__chr6:29928328-30009145|119|25.17|0.56|5.48|+|2|HLA-K,HLA-J|1	REV__chr6:29928328-30009145|119|25.17|0.56|5.48|+|2|HLA-K,HLA-J|1	MULTI-SECPEP	A375_MHC_IP_R1	1	395.80755615234375	3	395.568135	1183.68258	-0.33676	-0.00013321	0.13464	5.326E-05	-0.20212	-7.9954E-05	395.5683138757208	23.661	0.25454	23.661	23.483	23.737	0					6	4	2	0	0	0	0.75519	1	6561	6561		10.151	3.5202	1	2659000	+		26731	15763	19183	19338	26176	26176					0.098082047625212
KREAETLRER	10	Unmodified	_KREAETLRER_					0	0	0		ENSG00000158445|ENST00000371741|KCNB1	ENSG00000158445|ENST00000371741|KCNB1	ENSG00000158445|ENST00000371741|KCNB1	MULTI-MSMS	A375_MHC_IP_R2	2	430.3089294433594	3	429.909109	1286.7055	-0.20542	-8.8314E-05	0.30592	0.00013152	0.10049	4.3203E-05	429.909106037683	130.92	1.7806	131.13	130.91	132.69	0.21419					64	34	3	0	0	0	0.71267	1	51466	51466		6.6235	3.0308	1	11182000			26732	6306	19184	19339	26177	26177					0.07361179089321013
KREFAFDDA	9	Unmodified	_KREFAFDDA_					0	0	0		ENSG00000068354|ENST00000376771|TBC1D25	ENSG00000068354|ENST00000376771|TBC1D25	ENSG00000068354|ENST00000376771|TBC1D25	MULTI-SECPEP	A375_MHC_IP_R1	1	366.61370849609375	3	366.845334	1097.51417	0.3954	0.00014505	0.20177	7.4017E-05	0.59717	0.00021907	366.84533913877726	35.349	0.45763	35.349	35.116	35.573	0					13	8	2	0	0	0	0.67483	1	11665	11665		10.151	5.6217	1	1057700			26733	1457	19185	19340	26178	26178					-0.03068321941805152
KREFAFDDA	9	Unmodified	_KREFAFDDA_					0	0	0		ENSG00000068354|ENST00000376771|TBC1D25	ENSG00000068354|ENST00000376771|TBC1D25	ENSG00000068354|ENST00000376771|TBC1D25	MULTI-SECPEP	A375_MHC_IP_R2	2	366.6134338378906	3	366.845334	1097.51417	-0.10913	-4.0034E-05	0.18042	6.6188E-05	0.071294	2.6154E-05	366.8453647521635	34.426	0.2555	35.179	35.057	35.312	0.75225					8	4	3	0	0	0	0.74412	1	12411	12411		10.151	4.4187	1	1537600			26734	1457	19185	19340	26179	26179					-0.03068321941805152
KREGRRWRREP	11	Unmodified	_KREGRRWRREP_					0	0	0		ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	MULTI-MSMS	A375_MHC_IP_R1	1	509.6918029785156	3	509.290546	1524.84981	-0.18157	-9.2472E-05	1.7182	0.00087508	1.5367	0.00078261	509.2908259537781	48.096	0.50487	48.096	47.668	48.173	0					15	9	3	0	0	0	0.73672	1	16976	16976		1.0136	0.60531	1	3362200			26735	9697	19186	19341	26180	26180					0.10837865359962962
KREQWKKLRR	10	Unmodified	_KREQWKKLRR_					0	0	0		ENSG00000147684|ENST00000276689|NDUFB9	ENSG00000147684|ENST00000276689|NDUFB9	ENSG00000147684|ENST00000276689|NDUFB9	MSMS	A375_MHC_IP_R1	1	714.4402465820312	2	714.438944	1426.86333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.536	1	89.536	89.036	90.036	0								0	0	0	0.15596	1	32891	32891		1.4819	0.15237	1				26736	5701	19187	19342	26181	26181					0.16697723139191112
KRERRRTIHTF	11	Unmodified	_KRERRRTIHTF_					0	0	0		ENSG00000109089|ENST00000337231|CDR2L	ENSG00000109089|ENST00000337231|CDR2L	ENSG00000109089|ENST00000337231|CDR2L	MSMS	A375_MHC_IP_R1	1	750.4794311523438	2	750.436932	1498.85931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.31	1	125.31	124.81	125.81	0								0	0	0	0.16334	1	47615	47615		1.3295	0.13619	1				26737	2854	19188	19343	26182	26182					0.12983633645512782
KREYFREVDQK	11	Unmodified	_KREYFREVDQK_					0	0	0			REV__ENSG00000198887|ENST00000361138|SMC5	REV__ENSG00000198887|ENST00000361138|SMC5	MSMS	A375_MHC_IP_R2	2	749.3941650390625	2	749.394064	1496.77358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.79	1	104.56	104.06	105.06	0.76428								0	0	0	0.16337	1	39293	39293		1.1933	0.12188	1		+		26738	22440	19189	19344	26183	26183					0.04506003949313708
KREYKRWHEAI	11	Unmodified	_KREYKRWHEAI_					0	0	0			REV__nc|ENSG00000212789|Q8NFI4|ST13P5	REV__nc|ENSG00000212789|Q8NFI4|ST13P5	MULTI-SECPEP	A375_MHC_IP_R2	2	506.67681884765625	3	505.944153	1514.81063	-1.1116	-0.00056239	-1.907	-0.00096485	-3.0186	-0.0015272	506.2771311322174	59.003	0.40604	59.75	59.59	59.996	0.74714					12	7	2	0	0	0	0.99732	1	22349	22349		4.1166	0	1	1673500	+		26739	27487	19190	19345	26184	26184					0.07381720285752635
KRFALAPV	8	Unmodified	_KRFALAPV_					0	0	0			REV__ENST00000590234.5_1_18:47810259-47810415:-|nuORF	REV__ENST00000590234.5_1_18:47810259-47810415:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	452.0195007324219	2	451.284537	900.554522	-0.57272	-0.00025846	0.33213	0.00014989	-0.24058	-0.00010857	451.28478692038186	60.661	0.71389	61.406	60.801	61.515	0.74504					21	13	3	0	0	0	0.972	1	22841	22841		2.5775	2.5775	1	2224800	+		26740	26429	19191	19346	26185	26185					0.10026689239259667
KRFERNEWCN	10	Unmodified	_KRFERNEWCN_					0	0	0			REV__ENST00000428240.1_1_21:35191545-35199165:+|nuORF	REV__ENST00000428240.1_1_21:35191545-35199165:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	461.6200866699219	3	461.219177	1380.6357	-0.78492	-0.00036202	1.9358	0.00089283	1.1509	0.00053081	461.22001684605635	20.098	0.3057	20.709	20.549	20.855	0.61029					12	5	3	0	0	0	0.94918	1	6263	6263		1.7423	0.41263	1	1682500	+		26741	24675	19192	19347	26186	26186					-0.039390228509091685
KRFFEVRRV	9	Unmodified	_KRFFEVRRV_					0	0	0		ENSG00000086598|ENST00000262225|TMED2;ENST00000543425.1_1_12:124075023-124081273:+|nuORF	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-SECPEP	A375_MHC_IP_R1	1	413.3155822753906	3	412.915646	1235.72511	0.039798	1.6433E-05	-0.21764	-8.9868E-05	-0.17784	-7.3435E-05	412.9155693555972	27.834	0.60403	27.834	27.584	28.188	0					33	11	4	0	0	0	0.31976	1	8481	8481		51.488	41.337	1	15163000			26742	1840	19193	19348	26187	26187					0.11667599890733982
KRFFEVRRV	9	Unmodified	_KRFFEVRRV_					0	0	0		ENSG00000086598|ENST00000262225|TMED2;ENST00000543425.1_1_12:124075023-124081273:+|nuORF	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-SECPEP	A375_MHC_IP_R2	2	413.3152770996094	3	412.915646	1235.72511	-0.16553	-6.8351E-05	0.1958	8.085E-05	0.03027	1.2499E-05	412.9156849480456	26.934	0.46172	27.594	27.363	27.825	0.65992					27	8	5	0	0	0	0.40495	1	9135	9135		44.392	31.536	1	16060000			26743	1840	19193	19348	26188	26188					0.11667599890733982
KRFHLPEYPD	10	Unmodified	_KRFHLPEYPD_					0	0	0		ENST00000484725.1_1_4:75023915-75027541:+|nuORF	ENST00000484725.1_1_4:75023915-75027541:+|nuORF	ENST00000484725.1_1_4:75023915-75027541:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	434.9591064453125	3	434.559417	1300.65642	-0.099406	-4.3198E-05	-0.68805	-0.000299	-0.78746	-0.0003422	434.55906062093254	63.147	0.6143	63.147	62.813	63.427	0					26	11	3	0	0	0	0.70741	2	22805	22805;22841		8.9762	0.22446	1	4000800			26744	12566	19194	19349	26189;26190	26189					0.01811890800377114
KRFILHAKK	9	Unmodified	_KRFILHAKK_					0	0	0		ENSG00000164163|ENST00000296577|ABCE1;ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENST00000444025.1_1_7:23602199-23602811:-|nuORF	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-MSMS	A375_MHC_IP_R2	2	380.97161865234375	3	380.916987	1139.72913	-0.088262	-3.3621E-05	0.17203	6.553E-05	0.08377	3.1909E-05	380.91695478395445	44.571	0.3543	45.34	45.138	45.492	0.76909					14	6	3	0	0	0	0.69317	1	16568	16568		7.609	0.50723	1	2639900			26745	6792	19195	19350	26191	26191					0.16485689384444413
KRFKQVNVL	9	Unmodified	_KRFKQVNVL_					0	0	0		nc|ENSG00000147041|Q8TDW5-2|SYTL5;ENSG00000147041|ENST00000297875|SYTL5	nc|ENSG00000147041|Q8TDW5-2|SYTL5	nc|ENSG00000147041|Q8TDW5-2|SYTL5	MULTI-MSMS	A375_MHC_IP_R1	1	378.30487060546875	3	377.904747	1130.69241	0.2195	8.295E-05	-0.21188	-8.007E-05	0.0076204	2.8798E-06	377.9046592294112	27.206	0.65586	27.206	26.928	27.584	0					36	12	4	0	0	0	0.12771	1	8194	8194		45.7	18.476	1	34742000			26746	5650	19196	19351	26192	26192					0.13229392767902937
KRFKQVNVL	9	Unmodified	_KRFKQVNVL_					0	0	0		nc|ENSG00000147041|Q8TDW5-2|SYTL5;ENSG00000147041|ENST00000297875|SYTL5	nc|ENSG00000147041|Q8TDW5-2|SYTL5	nc|ENSG00000147041|Q8TDW5-2|SYTL5	MULTI-MSMS	A375_MHC_IP_R2	2	378.30462646484375	3	377.904747	1130.69241	-0.24498	-9.2579E-05	0.31769	0.00012006	0.072713	2.7478E-05	377.9049417169269	26.3	0.86311	26.959	26.551	27.414	0.65992					42	16	4	0	0	0	0.050868	1	8864	8864		63.961	30.516	1	26724000			26747	5650	19196	19351	26193	26193					0.13229392767902937
KRFLMVMKGA	10	Unmodified	_KRFLMVMKGA_					0	0	0		ENSG00000075673|ENST00000381946|ATP12A;nc|ENSG00000075673|P54707-2|ATP12A	ENSG00000075673|ENST00000381946|ATP12A	ENSG00000075673|ENST00000381946|ATP12A	MULTI-MSMS	A375_MHC_IP_R1	1	395.25091552734375	3	394.227957	1179.66204	-0.17527	-6.9096E-05	0.28209	0.00011121	0.10682	4.2111E-05	394.22803616357487	27.982	0.95745	27.982	27.533	28.491	0					59	18	4	0	0	0	0.72006	1	8480	8480		3.3196	3.3196	1	28819000			26748	1618	19197	19352	26194	26194					0.07939574786860248
KRFPNIKVI	9	Unmodified	_KRFPNIKVI_					0	0	0		ENSG00000121350|ENST00000240651|PYROXD1;nc|ENSG00000121350|Q8WU10-2|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	MULTI-MSMS	A375_MHC_IP_R1	1	372.6015625	3	372.241359	1113.70225	0.45203	0.00016826	-0.24153	-8.9906E-05	0.2105	7.8358E-05	372.241209694295	43.395	0.9167	43.395	42.942	43.859	0					41	17	3	0	0	0	0.69317	1	15055	15055		7.609	7.609	1	4310700			26749	3717	19198	19353	26195	26195					0.14994580773281996
KRFPNIKVI	9	Unmodified	_KRFPNIKVI_					0	0	0		ENSG00000121350|ENST00000240651|PYROXD1;nc|ENSG00000121350|Q8WU10-2|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	MULTI-SECPEP	A375_MHC_IP_R2	2	372.6412658691406	3	372.241359	1113.70225	0.51751	0.00019264	-0.51964	-0.00019343	-0.0021366	-7.9533E-07	372.24113803615717	42.349	0.8157	43.121	42.757	43.573	0.7724					23	15	2	0	0	0	0.74875	1	15733	15733		10.8	3.1906	1	2465400			26750	3717	19198	19353	26196	26196					0.14994580773281996
KRFPNIKVI	9	Unmodified	_KRFPNIKVI_					0	0	0		ENSG00000121350|ENST00000240651|PYROXD1;nc|ENSG00000121350|Q8WU10-2|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	372.241359	1113.70225	0.45203	0.00016826	-0.24153	-8.9906E-05	0.2105	7.8358E-05	372.241209694295	43.395	0.9167	43.395	42.942	43.859	0	0.13715	0.00016319	NaN	7.609	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4310700			26751	3717	19198	19353							0.14994580773281996
KRFQKTLYV	9	Unmodified	_KRFQKTLYV_					0	0	0		nc|ENSG00000106105|P41250-2|GARS1;ENSG00000106105|ENST00000389266|GARS1	nc|ENSG00000106105|P41250-2|GARS1	nc|ENSG00000106105|P41250-2|GARS1	MULTI-MSMS	A375_MHC_IP_R1	1	395.30462646484375	3	394.904636	1181.69208	-0.33742	-0.00013325	-0.65335	-0.00025801	-0.99077	-0.00039126	394.9045671526673	26.499	0.6567	26.499	26.221	26.878	0					31	12	3	0	0	0	0.31062	2	7921	7921;7965		29.841	8.3036	1	6493200			26752	2668	19199	19354	26197;26198	26197					0.10849973048038919
KRFQKTLYV	9	Unmodified	_KRFQKTLYV_					0	0	0		nc|ENSG00000106105|P41250-2|GARS1;ENSG00000106105|ENST00000389266|GARS1	nc|ENSG00000106105|P41250-2|GARS1	nc|ENSG00000106105|P41250-2|GARS1	MULTI-MSMS	A375_MHC_IP_R2	2	395.304443359375	3	394.904636	1181.69208	-0.59756	-0.00023598	-0.27117	-0.00010709	-0.86873	-0.00034307	394.90478802840136	25.619	0.71074	26.279	25.992	26.703	0.65992					22	13	3	0	0	0	0.16945	1	8582	8582		40.239	25.282	1	4898000			26753	2668	19199	19354	26199	26199					0.10849973048038919
KRFSCLSLRSS	11	Unmodified	_KRFSCLSLRSS_					0	0	0		ENST00000497512.5_1_4:78078410-78106259:+|nuORF	ENST00000497512.5_1_4:78078410-78106259:+|nuORF	ENST00000497512.5_1_4:78078410-78106259:+|nuORF	MSMS	A375_MHC_IP_R1	1	642.2821044921875	2	642.348071	1282.68159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.58	1	129.58	129.08	130.08	0								0	0	0	0.16258	1	49844	49844		5.2969	0.39987	1				26754	12745	19200	19355	26200	26200					0.05155622331290033
KRFSEPQKL	9	Unmodified	_KRFSEPQKL_					0	0	0		ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MULTI-MSMS	A375_MHC_IP_R1	1	378.6206359863281	3	378.220624	1131.64004	0.2556	9.6675E-05	0.18788	7.1062E-05	0.44349	0.00016774	378.2206861633222	19.643	0.86325	19.643	19.368	20.232	0					61	16	6	0	0	0	0.026372	1	4884	4884		78.06	26.645	1	124940000			26755	3043	19201	19356	26201	26201					0.0794880963428568
KRFSEPQKL	9	Unmodified	_KRFSEPQKL_					0	0	0		ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MULTI-MSMS	A375_MHC_IP_R1	1	378.6204528808594	3	378.220624	1131.64004	0.66215	0.00025044	1.4399	0.00054461	2.1021	0.00079504	378.22041041146224	21.905	1.0673	21.905	21.505	22.572	0					32	20	2	0	0	0	0.16945	1	5817	5817		40.239	15.358	1	10330000			26756	3043	19201	19356	26202	26202					0.0794880963428568
KRFSEPQKL	9	Unmodified	_KRFSEPQKL_					0	0	0		ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MULTI-SECPEP	A375_MHC_IP_R1	1	567.2274780273438	2	566.827298	1131.64004	-0.45679	-0.00025892	0.37358	0.00021176	-0.083204	-4.7162E-05	566.8275133799798	19.597	0.55989	19.597	19.42	19.98	0					28	10	3	0	0	0	0.0575	1	4923	4923		76.825	25.195	1	6552900			26757	3043	19201	19356	26203	26203					0.0794880963428568
KRFSEPQKL	9	Unmodified	_KRFSEPQKL_					0	0	0		ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MULTI-MSMS	A375_MHC_IP_R2	2	378.620361328125	3	378.220624	1131.64004	-0.13479	-5.098E-05	-0.16053	-6.0716E-05	-0.29532	-0.0001117	378.22043146593904	18.905	0.5627	19.508	19.423	19.986	0.60308					30	12	4	0	0	0	0.026372	2	5709	5648;5709		78.06	26.859	1	256080000			26758	3043	19201	19356	26204;26205	26205					0.0794880963428568
KRFSGTVRL	9	Unmodified	_KRFSGTVRL_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;RPL10A|p.L111Wfs*6|1|0.08|ENSG00000198755|chr6:35470196-35470196|T/-|frameshift_variant;ENST00000467020.5_1_6:35436211-35436817:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A;ENST00000467020.5_1_6:35436211-35436817:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	A375_MHC_IP_R1	1	355.61712646484375	3	355.217214	1062.62981	-0.016759	-5.953E-06	-0.43062	-0.00015296	-0.44737	-0.00015892	355.2170594362274	24.977	0.86334	24.977	24.647	25.511	0					53	16	5	0	0	0	0.020264	2	7201	7201;7303		83.278	41.322	1	525540000			26759	9318;12272	19202	19357	26206;26207	26206					0.10100246699721538
KRFSGTVRL	9	Unmodified	_KRFSGTVRL_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;RPL10A|p.L111Wfs*6|1|0.08|ENSG00000198755|chr6:35470196-35470196|T/-|frameshift_variant;ENST00000467020.5_1_6:35436211-35436817:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A;ENST00000467020.5_1_6:35436211-35436817:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	A375_MHC_IP_R2	2	354.96527099609375	3	355.217214	1062.62981	-0.5166	-0.0001835	-0.23705	-8.4203E-05	-0.75365	-0.00026771	355.2171950942929	24.289	0.75997	24.932	24.705	25.465	0.64368					48	14	5	0	0	0	0.020264	3	7929	7929;7935;8085		83.278	33.723	1	393160000			26760	9318;12272	19202	19357	26208;26209;26210	26208					0.10100246699721538
KRFSGTVRL	9	Unmodified	_KRFSGTVRL_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;RPL10A|p.L111Wfs*6|1|0.08|ENSG00000198755|chr6:35470196-35470196|T/-|frameshift_variant;ENST00000467020.5_1_6:35436211-35436817:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A;ENST00000467020.5_1_6:35436211-35436817:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	A375_MHC_IP_R2	2	532.7218017578125	2	532.322183	1062.62981	-0.98497	-0.00052432	-0.11936	-6.3539E-05	-1.1043	-0.00058786	532.3221546741889	24.284	0.20318	24.928	24.806	25.009	0.64368					8	3	3	0	0	0	0.6629	1	7963	7963		10.151	2.8613	1	11039000			26761	9318;12272	19202	19357	26211	26211					0.10100246699721538
KRFWRSWRRVY	11	Unmodified	_KRFWRSWRRVY_					0	0	0		ENST00000496222.1_1_3:160156960-160167504:-|nuORF;ENST00000483754.1_1_3:160156960-160167537:-|nuORF	ENST00000496222.1_1_3:160156960-160167504:-|nuORF	ENST00000496222.1_1_3:160156960-160167504:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	411.1308288574219	4	410.732472	1638.90078	-0.31833	-0.00013075	-2.2252	-0.00091398	-2.5436	-0.0010447	410.73113550599675	21.071	0.55734	21.69	21.271	21.828	0.61932					32	10	4	0	0	0	1.0015	1	6630	6630		0.073264	0.073264	1	1423600			26762	12546	19203	19358	26212	26212					0.1068881440480709
KRGDERISPP	10	Unmodified	_KRGDERISPP_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	MSMS	A375_MHC_IP_R2	2	385.59906005859375	3	385.5474	1153.62037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.428	1	34.18	33.68	34.68	0.75225								0	0	0	0.15267	1	11975	11975		12.175	0.54338	1		+		26763	19624	19204	19359	26213	26213					0.04970433623520876
KRHLRRRE	8	Unmodified	_KRHLRRRE_					0	0	0		ENST00000610086.1_1_7:86954707-86970752:-|nuORF	ENST00000610086.1_1_7:86954707-86970752:-|nuORF	ENST00000610086.1_1_7:86954707-86970752:-|nuORF	MSMS	A375_MHC_IP_R2	2	384.2889709472656	3	384.239123	1149.69554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.647	1	72.381	71.881	72.881	0.73421								0	0	0	0.16876	1	27182	27182		5.7319	2.1354	1				26764	13941	19205	19360	26214	26214					0.12668080665253
KRHRPSAGGP	10	Unmodified	_KRHRPSAGGP_					0	0	0		ENSG00000149782|ENST00000279230|PLCB3;nc|ENSG00000149782|Q01970-2|PLCB3	ENSG00000149782|ENST00000279230|PLCB3	ENSG00000149782|ENST00000279230|PLCB3	MULTI-MSMS	A375_MHC_IP_R1	1	355.5795593261719	3	354.868696	1061.58426	-0.045414	-1.6116E-05	1.3064	0.0004636	1.261	0.00044748	354.86949981445997	25.229	1.1149	25.229	24.953	26.068	0					83	21	5	0	0	0	0.70174	1	7611	7611		11.518	3.3624	1	603810000			26765	5830	19206	19361	26215	26215					0.055930212373368704
KRHWKIRHLEE	11	Unmodified	_KRHWKIRHLEE_					0	0	0			REV__CYTH4|p.Q20H|1|0.22|ENSG00000100055|chr22:37292661-37292661|G/C|missense_variant	REV__CYTH4|p.Q20H|1|0.22|ENSG00000100055|chr22:37292661-37292661|G/C|missense_variant	MSMS	A375_MHC_IP_R2	2	766.3364868164062	2	766.433858	1530.85316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.488	1	81.232	80.732	81.732	0.74474								0	0	0	0.16334	1	30557	30557		1.3295	0	1		+		26766	15962	19207	19362	26216	26216					0.10897115413990832
KRIDIIHNL	9	Unmodified	_KRIDIIHNL_					0	0	0		ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-MSMS	A375_MHC_IP_R1	1	374.96502685546875	3	374.564502	1120.67168	0.5722	0.00021433	0.0032211	1.2065E-06	0.57543	0.00021553	374.5644831488813	43.032	0.86327	43.032	42.537	43.4	0					41	16	4	0	0	0	0.02331	1	14900	14900		80.676	7.4797	1	13633000			26767	6736	19208	19363	26217	26217					0.11616802388221004
KRIDIIHNL	9	Unmodified	_KRIDIIHNL_					0	0	0		ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-MSMS	A375_MHC_IP_R2	2	374.96441650390625	3	374.564502	1120.67168	0.36356	0.00013618	0.21851	8.1845E-05	0.58206	0.00021802	374.5645348336612	41.959	0.86854	42.734	42.198	43.067	0.77451					34	16	3	0	0	0	0.033808	1	15581	15581		71.708	6.2342	1	13137000			26768	6736	19208	19363	26218	26218					0.11616802388221004
KRIDSATKLP	10	Unmodified	_KRIDSATKLP_					0	0	0			REV__ENST00000402003.7_1_2:30381593-30381641:+|nuORF	REV__ENST00000402003.7_1_2:30381593-30381641:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	377.6313781738281	3	376.896029	1127.66626	0.26285	9.9068E-05	1.2807	0.00048268	1.5435	0.00058175	376.89576772510907	27.48	0.71069	28.158	27.741	28.452	0.67857					28	13	3	0	0	0	0.6502	1	9411	9411		10.899	1.1347	1	7334900	+		26769	24411	19209	19364	26219	26219					0.1075307880573746
KRISVLTWQR	10	Unmodified	_KRISVLTWQR_					0	0	0			REV__ENST00000462663.5_1_3:158415931-158428584:-|nuORF	REV__ENST00000462663.5_1_3:158415931-158428584:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	644.5399780273438	2	643.888221	1285.76189	-0.82873	-0.00053361	-0.6595	-0.00042465	-1.4882	-0.00095825	643.8876030364634	143.01	1.2099	143.01	142.18	143.39	0					65	23	5	0	0	0	0.72014	1	54708	54708		3.2813	1.7994	1	13252000	+		26770	24993	19210	19365	26220	26220					0.1304385171663398
KRISVLTWQR	10	Unmodified	_KRISVLTWQR_					0	0	0			REV__ENST00000462663.5_1_3:158415931-158428584:-|nuORF	REV__ENST00000462663.5_1_3:158415931-158428584:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	643.888221	1285.76189	-0.51163	-0.00032943	-1.1098	-0.00071458	-1.6214	-0.001044	643.8874139029733	143.04	0.9144	143.07	142.53	143.45	0.030746	0.033178	-0.00025033	NaN	3.2813	60	17	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13691000	+		26771	24993	19210	19365							0.1304385171663398
KRKEDLQI	8	Unmodified	_KRKEDLQI_					0	0	0		nc|ENSG00000053524|Q86YR7-4|MCF2L2;ENSG00000053524|ENST00000328913|MCF2L2;MCF2L2|p.K854Ifs*2|1|0.18|ENSG00000053524|chr3:183207738-183207759|TCCTTCATTTTATAACGATCCT/-|frameshift_variant	nc|ENSG00000053524|Q86YR7-4|MCF2L2	nc|ENSG00000053524|Q86YR7-4|MCF2L2	MULTI-SECPEP	A375_MHC_IP_R1	1	514.9249267578125	2	515.306198	1028.59784	-0.055632	-2.8667E-05	-0.47456	-0.00024454	-0.53019	-0.00027321	515.3059218152029	49.209	1.2199	49.209	48.933	50.153	0					58	23	4	0	0	0	0.2175	1	17470	17470		88.904	19.799	1	91571000			26772	1249	19211	19366	26221	26221					0.08468834225891442
KRKEKVGKWEV	11	Unmodified	_KRKEKVGKWEV_					0	0	0		ENST00000551218.1_1_12:94914868-94915450:-|nuORF	ENST00000551218.1_1_12:94914868-94915450:-|nuORF	ENST00000551218.1_1_12:94914868-94915450:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	463.6951904296875	3	462.945383	1385.81432	-0.32915	-0.00015238	-0.52506	-0.00024307	-0.85421	-0.00039545	462.9453490889674	53.235	0.55695	53.235	52.897	53.453	0					21	10	3	0	0	0	0.99681	1	18846	18846		4.4062	0	1	1576500			26773	13381	19212	19367	26222	26222					0.13684390059597717
KRKHFFIKLHA	11	Unmodified	_KRKHFFIKLHA_					0	0	0		FRMD7|p.L239F|1|0.9|ENSG00000165694|chrX:132084516-132084516|G/A|missense_variant	FRMD7|p.L239F|1|0.9|ENSG00000165694|chrX:132084516-132084516|G/A|missense_variant	FRMD7|p.L239F|1|0.9|ENSG00000165694|chrX:132084516-132084516|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	712.916015625	2	712.935506	1423.85646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.9	1	116.59	116.09	117.09	0.68999								0	0	0	0.16331	1	43695	43695		1.4819	0	1				26774	14018	19213	19368	26223	26223					0.16148410258642798
KRKIPYILKRQ	11	Unmodified	_KRKIPYILKRQ_					0	0	0		ENSG00000133636|ENST00000256010|NTS	ENSG00000133636|ENST00000256010|NTS	ENSG00000133636|ENST00000256010|NTS	MSMS	A375_MHC_IP_R2	2	722.017333984375	2	721.969545	1441.92454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.53	1	115.23	114.73	115.73	0.69926								0	0	0	0.16334	1	43173	43173		1.3295	0	1				26775	4517	19214	19369	26224	26224					0.22125235118619457
KRKIVDFVA	9	Unmodified	_KRKIVDFVA_					0	0	0			REV__ENSG00000188011|ENST00000343216|RTP5	REV__ENSG00000188011|ENST00000343216|RTP5	MSMS	A375_MHC_IP_R1	1	359.3013916015625	3	359.225598	1074.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.985	1	37.985	37.485	38.485	0								0	0	0	0.15386	1	12844	12844		15.248	0.41021	1		+		26776	22065	19215	19370	26225	26225					0.12062301502282935
KRKKKLKKKK	10	Unmodified	_KRKKKLKKKK_					0	0	0		ENST00000372600.8_1_9:131679364-131679535:+|nuORF	ENST00000372600.8_1_9:131679364-131679535:+|nuORF	ENST00000372600.8_1_9:131679364-131679535:+|nuORF	MSMS	A375_MHC_IP_R1	1	657.004638671875	2	656.984998	1311.95544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.929	1	74.929	74.429	75.429	0								0	0	0	0.15642	1	27295	27295		0	0	1				26777	11206	19216	19371	26226	26226					0.31194433223527085
KRKKRKAKLRK	11	Unmodified	_KRKKRKAKLRK_					0	0	0			REV__LLPH|p.E110K|1|0.26|ENSG00000139233|chr12:66123902-66123902|C/T|missense_variant	REV__LLPH|p.E110K|1|0.26|ENSG00000139233|chr12:66123902-66123902|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	720.9095458984375	2	720.509703	1439.00485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.73	1	144.73	144.23	145.23	0								0	0	0	0.1636	1	55496	55496		0	0	1		+		26778	26932	19217	19372	26227	26227					0.302911412323283
KRKKRKAKLRK	11	Unmodified	_KRKKRKAKLRK_					0	0	0			REV__LLPH|p.E110K|1|0.26|ENSG00000139233|chr12:66123902-66123902|C/T|missense_variant	REV__LLPH|p.E110K|1|0.26|ENSG00000139233|chr12:66123902-66123902|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	720.8410034179688	2	720.509703	1439.00485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.23	1	145.25	144.75	145.75	0.021408								0	0	0	0.1636	1	56707	56707		0	0	1		+		26779	26932	19217	19372	26228	26228					0.302911412323283
KRKKRKAKLRK	11	Unmodified	_KRKKRKAKLRK_					0	0	0			REV__LLPH|p.E110K|1|0.26|ENSG00000139233|chr12:66123902-66123902|C/T|missense_variant	REV__LLPH|p.E110K|1|0.26|ENSG00000139233|chr12:66123902-66123902|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	720.90966796875	2	720.509703	1439.00485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.33	1	145.35	144.85	145.85	0.021408								0	0	0	0.1636	1	56742	56742		0	0	1		+		26780	26932	19217	19372	26229	26229					0.302911412323283
KRKKRKTKRRI	11	Unmodified	_KRKKRKTKRRI_					0	0	0		ENST00000415149.6_1_3:107429416-107435478:+|nuORF	ENST00000415149.6_1_3:107429416-107435478:+|nuORF	ENST00000415149.6_1_3:107429416-107435478:+|nuORF	MSMS	A375_MHC_IP_R1	1	749.8419799804688	2	749.51806	1497.02157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.51	1	119.51	119.01	120.01	0								0	0	0	0.1636	1	44180	44180		0	0	1				26781	11675	19218	19373	26230	26230					0.29293642118273056
KRKLLLKRKLL	11	Unmodified	_KRKLLLKRKLL_					0	0	0			REV__ENST00000342992.10_3_2:179510673-179515519:-|nuORF	REV__ENST00000342992.10_3_2:179510673-179515519:-|nuORF	MSMS	A375_MHC_IP_R1	1	705.034423828125	2	705.013756	1408.01296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.07	1	126.07	125.57	126.57	0								0	0	0	0.1636	1	48096	48096		0	0	1				26782	23746	19219	19374	26231	26231					0.32527275429129077
KRKLLLKRKLL	11	Unmodified	_KRKLLLKRKLL_					0	0	0			REV__ENST00000342992.10_3_2:179510673-179515519:-|nuORF	REV__ENST00000342992.10_3_2:179510673-179515519:-|nuORF	MSMS	A375_MHC_IP_R2	2	705.3223266601562	2	705.013756	1408.01296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.52	1	105.28	104.78	105.78	0.76308								0	0	0	0.1636	1	39543	39543		0	0	1				26783	23746	19219	19374	26232	26232					0.32527275429129077
KRKNILGAPG	10	Unmodified	_KRKNILGAPG_					0	0	0		nc|ENSG00000115423|Q9C0G6-4|DNAH6;ENSG00000115423|ENST00000389394|DNAH6;ENST00000602588.1_2_2:84885442-84924911:+|nuORF	nc|ENSG00000115423|Q9C0G6-4|DNAH6	nc|ENSG00000115423|Q9C0G6-4|DNAH6	MULTI-MSMS	A375_MHC_IP_R2	2	352.288818359375	3	351.889097	1052.64546	-0.61998	-0.00021816	-0.093705	-3.2974E-05	-0.71368	-0.00025114	351.88904352624445	38.454	0.45605	39.229	38.997	39.453	0.77451					26	8	4	0	0	0	0.70174	1	14137	14137		11.518	0	1	15555000			26784	3308	19220	19375	26233	26233					0.12124533216751843
KRKQANETKF	10	Unmodified	_KRKQANETKF_					0	0	0			REV__ENSG00000162896|ENST00000356495|PIGR	REV__ENSG00000162896|ENST00000356495|PIGR	MULTI-MSMS	A375_MHC_IP_R1	1	417.65716552734375	3	417.238566	1248.69387	0.11685	4.8755E-05	-0.4298	-0.00017933	-0.31294	-0.00013057	417.23828690297705	19.604	0.61049	19.604	19.318	19.928	0					25	11	3	0	0	0	0.72416	1	4717	4717		1.7423	1.1154	1	9937900	+		26785	20320	19221	19376	26234	26234					0.07946982065982411
KRKQHKRK	8	Unmodified	_KRKQHKRK_					0	0	0			REV__nc|ENSG00000166432|Q5H9K5-2|ZMAT1	REV__nc|ENSG00000166432|Q5H9K5-2|ZMAT1	MSMS	A375_MHC_IP_R1	1	370.306396484375	3	370.243986	1107.71013	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.441	1	42.441	41.941	42.941	0								0	0	0	0.16876	1	14710	14710		1.4819	0.28856	1		+		26786	20678	19222	19377	26235	26235					0.16058152813411652
KRKQKTADYK	10	Unmodified	_KRKQKTADYK_					0	0	0			REV__ENST00000547247.5_1_12:50479152-50482438:+|nuORF	REV__ENST00000547247.5_1_12:50479152-50482438:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	633.7683715820312	2	633.369861	1264.72517	-1.0114	-0.00064056	-0.97002	-0.00061438	-1.9814	-0.0012549	633.368793778943	141.78	2.4024	141.78	140.13	142.54	0					81	46	3	0	0	0	0.72358	1	54204	54204		3.5965	0	1	1006200	+		26787	16509	19223	19378	26236	26236					0.1033955510006308
KRKRKKEELH	10	Unmodified	_KRKRKKEELH_					0	0	0			REV__ENSG00000065183|ENST00000349139|WDR3	REV__ENSG00000065183|ENST00000349139|WDR3	MSMS	A375_MHC_IP_R2	2	676.4164428710938	2	676.417677	1350.8208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.24	1	122.62	122.12	123.12	0.3766								0	0	0	0.15531	1	46821	46821		3.5965	0.31518	1		+		26788	16489	19224	19379	26237	26237					0.15942328010987694
KRKRKRRQKKL	11	Unmodified	_KRKRKRRQKKL_					0	0	0			REV__ENSG00000176988|ENST00000370467|FMR1NB	REV__ENSG00000176988|ENST00000370467|FMR1NB	MSMS	A375_MHC_IP_R2	2	763.283203125	2	763.023509	1524.03247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.85	1	120.38	119.88	120.88	0.5321								0	0	0	0.1636	1	45675	45675		0	0	1		+		26789	21434	19225	19380	26238	26238					0.2914104449257593
KRKRKYNW	8	Unmodified	_KRKRKYNW_					0	0	0		ENSG00000145592|ENST00000274242|RPL37;ENST00000504562.1_1_5:40832608-40835123:-|nuORF;ENST00000507642.5_1_5:40832592-40834660:-|nuORF	ENSG00000145592|ENST00000274242|RPL37	ENSG00000145592|ENST00000274242|RPL37	MSMS	A375_MHC_IP_R2	2	393.623779296875	3	393.568358	1177.68324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.171	1	25.815	25.315	26.315	0.64368								0	0	0	0.16876	1	8380	8380		6.7232	2.317	1				26790	5566	19226	19381	26239	26239					0.10151044202211779
KRKRMRKIEK	10	Unmodified	_KRKRMRKIEK_					0	0	0			REV__ENSG00000139865|ENST00000553443|TTC6	REV__ENSG00000139865|ENST00000553443|TTC6	MSMS	A375_MHC_IP_R1	1	686.9568481445312	2	686.937722	1371.86089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.008	1	62.008	61.508	62.508	0								0	0	0	0.15631	1	22381	22381		0.35063	0.081612	1		+		26791	19183	19227	19382	26240	26240					0.18983551409883148
KRKRSNKKRYH	11	Unmodified	_KRKRSNKKRYH_					0	0	0			REV__ENST00000369975.5_1_6:76599813-76599894:+|nuORF	REV__ENST00000369975.5_1_6:76599813-76599894:+|nuORF	MSMS	A375_MHC_IP_R1	1	750.6524658203125	2	750.95275	1499.89095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.8	1	113.8	113.3	114.3	0								0	0	0	0.16353	1	41715	41715		0.35063	0	1		+		26792	24025	19228	19383	26241	26241					0.16099626399454792
KRKRVLKSKTY	11	Unmodified	_KRKRVLKSKTY_					0	0	0		ENSG00000077514|ENST00000263681|POLD3;ENST00000530163.1_1_11:74340223-74351808:+|nuORF;nc|ENSG00000077514|Q15054-3|POLD3;nc|ENSG00000077514|Q15054-2|POLD3	ENSG00000077514|ENST00000263681|POLD3	ENSG00000077514|ENST00000263681|POLD3	MSMS	A375_MHC_IP_R2	2	469.6574401855469	3	469.636661	1405.88815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.707	1	44.476	43.976	44.976	0.7691								0	0	0	0.16336	1	16291	16291		1.2148	0.70888	1				26793	1658	19229	19384	26242	26242					0.20144358221955372
KRKRVRRRRHL	11	Unmodified	_KRKRVRRRRHL_					0	0	0			REV__ENSG00000083168|ENST00000265713|KAT6A	REV__ENSG00000083168|ENST00000265713|KAT6A	MSMS	A375_MHC_IP_R1	1	520.9498901367188	3	521.013459	1560.01855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.334	1	22.334	21.834	22.834	0								0	0	0	0.16358	1	5985	5985		0.094841	0.094841	1		+		26794	16800	19230	19385	26243	26243					0.2609381178415333
KRKRVRRRRHL	11	Unmodified	_KRKRVRRRRHL_					0	0	0			REV__ENSG00000083168|ENST00000265713|KAT6A	REV__ENSG00000083168|ENST00000265713|KAT6A	MSMS	A375_MHC_IP_R2	2	520.9495239257812	3	521.013459	1560.01855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.939	1	22.559	22.059	23.059	0.61932								0	0	0	0.16358	1	6941	6941		0.094841	0.094841	1		+		26795	16800	19230	19385	26244	26244					0.2609381178415333
KRKWKRDLRDA	11	Unmodified	_KRKWKRDLRDA_					0	0	0			REV__nc|ENSG00000106443|O94880-2|PHF14	REV__nc|ENSG00000106443|O94880-2|PHF14	MULTI-MSMS	A375_MHC_IP_R2	2	491.6949768066406	3	491.291664	1470.85316	-0.34008	-0.00016708	0.8436	0.00041446	0.50352	0.00024737	491.6265729929041	143.15	0.40237	143.19	142.89	143.29	0.030731					16	7	3	0	0	0	0.73809	1	55894	55894		0.40827	0.32491	1	1310600	+		26796	17449	19231	19386	26245	26245					0.13657115413980137
KRKWKRDLRDA	11	Unmodified	_KRKWKRDLRDA_					0	0	0			REV__nc|ENSG00000106443|O94880-2|PHF14	REV__nc|ENSG00000106443|O94880-2|PHF14	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	491.291664	1470.85316	-0.34008	-0.00016708	0.8436	0.00041446	0.50352	0.00024737	491.6265729929041	143.15	0.40237	143.19	142.89	143.29	0.030731	0.047388	-8.1722E-05	NaN	0.40827	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1310600	+		26797	17449	19231	19386							0.13657115413980137
KRKWQRQKEPQ	11	Unmodified	_KRKWQRQKEPQ_					0	0	0		ENST00000418635.6_1_6:35378793-35391776:+|nuORF;ENST00000360694.7_1_6:35378793-35389621:+|nuORF	ENST00000418635.6_1_6:35378793-35391776:+|nuORF	ENST00000418635.6_1_6:35378793-35391776:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	756.8302612304688	2	756.431316	1510.84808	-0.85841	-0.00064933	-0.32638	-0.00024688	-1.1848	-0.00089621	756.4309844693333	143.13	0.50392	143.13	142.84	143.34	0					19	9	3	0	0	0	0.73378	1	54907	54907		5.2969	1.1074	1	1115800			26798	11034	19232	19387	26246	26246					0.11308811551339204
KRKWQRQKEPQ	11	Unmodified	_KRKWQRQKEPQ_					0	0	0		ENST00000418635.6_1_6:35378793-35391776:+|nuORF;ENST00000360694.7_1_6:35378793-35389621:+|nuORF	ENST00000418635.6_1_6:35378793-35391776:+|nuORF	ENST00000418635.6_1_6:35378793-35391776:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	756.431316	1510.84808	-0.69933	-0.00052899	-0.6146	-0.0004649	-1.3139	-0.00099389	756.43068800464	143.17	0.55676	143.21	142.84	143.39	0.030731	0.03951	-0.00015393	NaN	5.2969	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1845100			26799	11034	19232	19387							0.11308811551339204
KRKYRQYMNRK	11	Unmodified	_KRKYRQYMNRK_					0	0	0		ENSG00000124380|ENST00000244227|SNRNP27	ENSG00000124380|ENST00000244227|SNRNP27	ENSG00000124380|ENST00000244227|SNRNP27	MSMS	A375_MHC_IP_R2	2	785.9445190429688	2	785.940993	1569.86743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.86	1	80.604	80.104	81.104	0.74474								0	0	0	0.16354	1	30314	30314		0.30703	0.30703	1				26800	3896	19233	19388	26247	26247					0.10529444570602209
KRLESGVQF	9	Unmodified	_KRLESGVQF_					0	0	0		nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001|DST	MULTI-MSMS	A375_MHC_IP_R1	1	355.579345703125	3	355.201341	1062.58219	-0.22887	-8.1294E-05	-0.028496	-1.0122E-05	-0.25736	-9.1416E-05	355.2013068699681	27.932	0.70499	27.932	27.634	28.339	0					35	13	4	0	0	0	0.46038	1	8667	8667		15.248	5.0979	1	23299000			26801	5934;14680	19234	19389	26248	26248					0.05340547708851773
KRLIEESDLC	10	Unmodified	_KRLIEESDLC_					0	0	0			REV__SCN10A|p.P1094S|1|0.48|ENSG00000185313|chr3:38723502-38723502|G/A|missense_variant	REV__SCN10A|p.P1094S|1|0.48|ENSG00000185313|chr3:38723502-38723502|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	402.6472473144531	3	402.544667	1204.61217	-0.19682	-7.923E-05	0.60844	0.00024492	0.41162	0.00016569	402.54537946479985	30.096	0.60951	30.815	30.454	31.064	0.71857					25	11	3	0	0	0	0.71466	1	10414	10414		3.0723	0	1	3012700	+		26802	27916	19235	19390	26249	26249					0.018051185918920964
KRLIKHRPC	9	Unmodified	_KRLIKHRPC_					0	0	0		ENST00000522204.1_1_8:134478135-134488174:-|nuORF;ENSG00000008513|ENST00000522652|ST3GAL1	ENST00000522204.1_1_8:134478135-134488174:-|nuORF	ENST00000522204.1_1_8:134478135-134488174:-|nuORF	MSMS	A375_MHC_IP_R2	2	384.6046447753906	3	384.237843	1149.6917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.99	1	114.7	114.2	115.2	0.70985								0	0	0	0.15486	1	42983	42983		0.26902	0	1				26803	961	19236	19391	26250	26250					0.12284274847206689
KRLIQKVADP	10	Unmodified	_KRLIQKVADP_					0	0	0			REV__ENST00000476509.1_1_1:27683440-27684058:-|nuORF	REV__ENST00000476509.1_1_1:27683440-27684058:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	389.25238037109375	3	389.91179	1166.71354	-0.20359	-7.9382E-05	0.20588	8.0274E-05	0.0022883	8.9223E-07	389.9117966468624	29.63	1.5044	29.63	29.353	30.857	0					64	29	3	0	0	0	0.93041	1	9753	9753		11.518	2.5416	1	23564000	+		26804	19323	19237	19392	26251	26251					0.13685358076759258
KRLKYFVILM	10	Unmodified	_KRLKYFVILM_					0	0	0			REV__ENSG00000128594|ENST00000249363|LRRC4	REV__ENSG00000128594|ENST00000249363|LRRC4	MULTI-MSMS	A375_MHC_IP_R1	1	656.3040771484375	2	655.904494	1309.79443	-0.8029	-0.00052663	0.23199	0.00015216	-0.57091	-0.00037446	655.9043880125663	149.26	2.2828	149.26	147.72	150	0					243	79	5	0	0	0	0.72645	1	57051	57051		0.45834	0	1	2016400	+		26805	18457	19238	19393	26252	26252					0.15192922795290542
KRLLDGFSS	9	Unmodified	_KRLLDGFSS_					0	0	0		nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	MULTI-MSMS	A375_MHC_IP_R1	1	512.184326171875	2	511.785099	1021.55564	-0.90306	-0.00046217	-0.37604	-0.00019245	-1.2791	-0.00065462	511.784833176587	29.53	0.40014	29.53	29.302	29.703	0					12	7	2	0	0	0	0.22528	1	9241	9241		36.127	7.0454	1	28861000			26806	8503	19239	19394	26253	26253					0.04572858817527958
KRLLDGFSS	9	Unmodified	_KRLLDGFSS_					0	0	0		nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	MULTI-MSMS	A375_MHC_IP_R2	2	512.184326171875	2	511.785099	1021.55564	-1.3779	-0.00070518	-0.068351	-3.4981E-05	-1.4462	-0.00074016	511.78507297171063	28.69	0.54974	29.389	29.132	29.681	0.69872					19	10	3	0	0	0	0.41409	1	9957	9957		24.021	5.8742	1	29015000			26807	8503	19239	19394	26254	26254					0.04572858817527958
KRLLEQEFA	9	Unmodified	_KRLLEQEFA_					0	0	0		CRNN|p.L60Cfs*18|1|0.14|ENSG00000143536|chr1:152410905-152410905|A/-|frameshift_variant;ENSG00000143536|ENST00000271835|CRNN	CRNN|p.L60Cfs*18|1|0.14|ENSG00000143536|chr1:152410905-152410905|A/-|frameshift_variant	CRNN|p.L60Cfs*18|1|0.14|ENSG00000143536|chr1:152410905-152410905|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	378.9488220214844	3	378.548629	1132.62406	0.046001	1.7414E-05	0.35137	0.00013301	0.39738	0.00015043	378.54875089818495	30.678	0.7074	30.678	30.453	31.16	0					29	13	3	0	0	0	0.66474	1	9778	9778		10.151	1.995	1	5591600			26808	664	19240	19395	26255	26255					0.06305103397380662
KRLLILIILAP	11	Unmodified	_KRLLILIILAP_					0	0	0			REV__ENSG00000084453|ENST00000683939|SLCO1A2	REV__ENSG00000084453|ENST00000683939|SLCO1A2	MSMS	A375_MHC_IP_R1	1	631.9844970703125	2	631.949759	1261.88496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.627	1	66.627	66.127	67.127	0								0	0	0	0.1636	1	24131	24131		0	0	1		+		26809	16821	19241	19396	26256	26256					0.26449715115245453
KRLLILIILAP	11	Unmodified	_KRLLILIILAP_					0	0	0			REV__ENSG00000084453|ENST00000683939|SLCO1A2	REV__ENSG00000084453|ENST00000683939|SLCO1A2	MSMS	A375_MHC_IP_R2	2	631.9454345703125	2	631.949759	1261.88496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.657	1	90.389	89.889	90.889	0.7318								0	0	0	0.16354	1	34116	34116		0.30703	0.30703	1		+		26810	16821	19241	19396	26257	26257					0.26449715115245453
KRLLLKVKIIK	11	Unmodified	_KRLLLKVKIIK_					0	0	0			REV__ENST00000379380.8_1_5:130517939-130517987:+|nuORF	REV__ENST00000379380.8_1_5:130517939-130517987:+|nuORF	MSMS	A375_MHC_IP_R1	1	676.5145874023438	2	676.497407	1350.98026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.022	1	73.022	72.522	73.522	0								0	0	0	0.1636	1	26578	26578		0	0	1		+		26811	24197	19242	19397	26258	26258					0.31881068306256566
KRLLLKVKIIK	11	Unmodified	_KRLLLKVKIIK_					0	0	0			REV__ENST00000379380.8_1_5:130517939-130517987:+|nuORF	REV__ENST00000379380.8_1_5:130517939-130517987:+|nuORF	MSMS	A375_MHC_IP_R2	2	676.5147705078125	2	676.497407	1350.98026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.631	1	69.367	68.867	69.867	0.73511								0	0	0	0.1636	1	26006	26006		0	0	1		+		26812	24197	19242	19397	26259	26259					0.31881068306256566
KRLNSYLSL	9	Unmodified	_KRLNSYLSL_					0	0	0		ENST00000459737.5_1_14:56117338-56119572:+|nuORF	ENST00000459737.5_1_14:56117338-56119572:+|nuORF	ENST00000459737.5_1_14:56117338-56119572:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	365.6170959472656	3	365.216991	1092.62914	0.61366	0.00022412	0.049785	1.8182E-05	0.66344	0.0002423	365.2169327001803	49.45	0.71132	49.45	49.134	49.845	0					35	13	4	0	0	0	0.11629	1	17458	17458		37.075	1.4624	1	9392200			26813	12155	19243	19398	26260	26260					0.08653407259998858
KRLQSPALWW	10	Unmodified	_KRLQSPALWW_					0	0	0		ACSM2A|p.P65Q|1|0.12|ENSG00000183747|chr16:20465533-20465533|C/A|missense_variant	ACSM2A|p.P65Q|1|0.12|ENSG00000183747|chr16:20465533-20465533|C/A|missense_variant	ACSM2A|p.P65Q|1|0.12|ENSG00000183747|chr16:20465533-20465533|C/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	429.311767578125	3	428.911902	1283.71388	-0.045961	-1.9713E-05	-0.098866	-4.2405E-05	-0.14483	-6.2118E-05	428.9119396688335	62.94	0.46141	62.94	62.66	63.121	0					19	8	3	0	0	0	0.7086	1	22735	22735		8.4443	0.96724	1	3227400			26814	34	19244	19399	26261	26261					0.08336777796580463
KRLYAHESKLK	11	Unmodified	_KRLYAHESKLK_					0	0	0		CCDC63|p.E253K|1|0.48|ENSG00000173093|chr12:110881200-110881200|G/A|missense_variant	CCDC63|p.E253K|1|0.48|ENSG00000173093|chr12:110881200-110881200|G/A|missense_variant	CCDC63|p.E253K|1|0.48|ENSG00000173093|chr12:110881200-110881200|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	686.541748046875	2	686.906611	1371.79867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.1	1	108.1	107.6	108.6	0								0	0	0	0.16273	1	39660	39660		4.5289	0.65253	1				26815	315	19245	19400	26262	26262					0.12764103542531302
KRMFAQHTR	9	Unmodified	_KRMFAQHTR_					0	0	0			REV__ENST00000476824.1_1_2:182363351-182392165:+|nuORF	REV__ENST00000476824.1_1_2:182363351-182392165:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	391.5855712890625	3	392.213586	1173.61893	0.11355	4.4535E-05	2.5582	0.0010034	2.6718	0.0010479	392.5487864029256	59.321	0.35549	59.321	59.143	59.498	0					11	6	2	0	0	0	0.8028	1	21377	21377		2.4985	2.4985	1	1280600	+		26816	17863	19246	19401	26263	26263					0.039065210537501116
KRMFAQHTR	9	Unmodified	_KRMFAQHTR_					0	0	0			REV__ENST00000476824.1_1_2:182363351-182392165:+|nuORF	REV__ENST00000476824.1_1_2:182363351-182392165:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	392.213586	1173.61893	-0.50044	-0.00019628	2.796	0.0010966	2.2956	0.00090035	392.2146260792857	58.463	0.40903	59.212	58.929	59.338	0.74894	-0.054649	4.5005E-05	NaN	0.96228	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1608300	+		26817	17863	19246	19401							0.039065210537501116
KRMRLRKNRRQ	11	Unmodified	_KRMRLRKNRRQ_					0	0	0			REV__ENST00000544803.5_1_2:176794774-176794831:-|nuORF	REV__ENST00000544803.5_1_2:176794774-176794831:-|nuORF	MSMS	A375_MHC_IP_R1	1	771.7197265625	2	771.473326	1540.9321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.76	1	144.76	144.26	145.26	0								0	0	0	0.16353	1	55505	55505		0.35063	0	1		+		26818	25990	19247	19402	26264	26264					0.18327064167260687
KRMRTVTNYFF	11	Unmodified	_KRMRTVTNYFF_					0	0	0		TACR3|p.L124F|1|0.32|ENSG00000169836|chr4:103719306-103719306|G/A|missense_variant	TACR3|p.L124F|1|0.32|ENSG00000169836|chr4:103719306-103719306|G/A|missense_variant	TACR3|p.L124F|1|0.32|ENSG00000169836|chr4:103719306-103719306|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	488.4694519042969	3	488.258973	1461.75509	-0.23887	-0.00011663	1.9308	0.00094275	1.692	0.00082611	488.5943701648913	55.661	0.56157	55.661	55.228	55.79	0					13	10	2	0	0	0	0.99778	1	19895	19895		3.8459	1.4111	1	1135400			26819	29289	19248	19403	26265	26265					0.042681707737528995
KRNDYVHAL	9	Unmodified	_KRNDYVHAL_					0	0	0		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-MSMS	A375_MHC_IP_R1	1	372.93670654296875	3	372.536724	1114.58834	0.073559	2.7403E-05	-0.35096	-0.00013074	-0.2774	-0.00010334	372.53663927765496	23.813	1.0122	23.813	23.635	24.647	0					52	19	5	0	0	0	0.04093	1	6618	6618		67.838	40.615	1	66662000			26820	4043	19249	19404	26266	26266					0.03563065940352317
KRNDYVHAL	9	Unmodified	_KRNDYVHAL_					0	0	0		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-MSMS	A375_MHC_IP_R2	2	372.9367370605469	3	372.536724	1114.58834	0.10286	3.8318E-05	-0.55271	-0.00020591	-0.44986	-0.00016759	372.53651749986307	22.969	0.8145	23.599	23.215	24.029	0.63014					42	15	4	0	0	0	0.033808	1	7313	7313		71.708	41.004	1	31753000			26821	4043	19249	19404	26267	26267					0.03563065940352317
KRNDYVHAL	9	Unmodified	_KRNDYVHAL_					0	0	0		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-SECPEP	A375_MHC_IP_R2	2	372.9365539550781	3	372.536724	1114.58834	0.17413	6.4871E-05	-1.4698	-0.00054754	-1.2956	-0.00048267	372.5363276141127	23.606	0.91425	24.236	23.979	24.893	0.63014					25	17	2	0	0	0	0.24548	1	7647	7647		47.594	39.439	1	5174700			26822	4043	19249	19404	26268	26268					0.03563065940352317
KRNEIQMELYH	11	Unmodified	_KRNEIQMELYH_					0	0	0			REV__nc|ENSG844|Q9WJR5|ERVK-19_pol	REV__nc|ENSG844|Q9WJR5|ERVK-19_pol	MSMS	A375_MHC_IP_R1	1	487.4795227050781	3	487.582004	1459.72418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.644	1	35.644	35.144	36.144	0								0	0	0	0.1628	1	11870	11870		4.1166	1.4854	1		+		26823	27574	19250	19405	26269	26269					0.012709726688854062
KRNELVIRV	9	Unmodified	_KRNELVIRV_					0	0	0		ENST00000490651.1_1_X:153760401-153761015:-|nuORF;ENSG00000160211|ENST00000393562|G6PD;nc|ENSG00000160211|P11413-3|G6PD;nc|ENSG00000160211|P11413-2|G6PD	ENST00000490651.1_1_X:153760401-153761015:-|nuORF	ENST00000490651.1_1_X:153760401-153761015:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	376.6399841308594	3	376.240018	1125.69823	0.30373	0.00011427	-2.5376	-0.00095475	-2.2339	-0.00084048	376.2398890791116	31.963	1.0199	31.963	31.465	32.485	0					63	19	5	0	0	0	0.021859	2	10283	10283;10410		81.915	53.421	1	21442000			26824	6405	19251	19406	26270;26271	26270					0.14040491279524758
KRNELVIRV	9	Unmodified	_KRNELVIRV_					0	0	0		ENST00000490651.1_1_X:153760401-153761015:-|nuORF;ENSG00000160211|ENST00000393562|G6PD;nc|ENSG00000160211|P11413-3|G6PD;nc|ENSG00000160211|P11413-2|G6PD	ENST00000490651.1_1_X:153760401-153761015:-|nuORF	ENST00000490651.1_1_X:153760401-153761015:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	376.6398620605469	3	376.240018	1125.69823	0.20363	7.6613E-05	-2.763	-0.0010396	-2.5594	-0.00096294	376.23986006361883	30.968	1.1652	31.687	30.962	32.128	0.71857					61	22	5	0	0	0	0.053667	1	10951	10951		62.869	40.21	1	19000000			26825	6405	19251	19406	26272	26272					0.14040491279524758
KRNFIESTP	9	Unmodified	_KRNFIESTP_					0	0	0		EPB41L2|p.M656I|1|0.16|ENSG00000079819|chr6:130878179-130878179|C/T|missense_variant	EPB41L2|p.M656I|1|0.16|ENSG00000079819|chr6:130878179-130878179|C/T|missense_variant	EPB41L2|p.M656I|1|0.16|ENSG00000079819|chr6:130878179-130878179|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	364.9208068847656	3	364.532979	1090.57711	0.022565	8.2259E-06	-1.4616	-0.00053279	-1.439	-0.00052456	364.5324024943585	27.061	0.40209	27.061	26.878	27.28	0					14	7	3	0	0	0	0.52905	1	8114	8114		18.373	10.428	1	3288900			26826	13943	19252	19407	26273	26273					0.03544243846226891
KRNHYMLLVFV	11	Unmodified	_KRNHYMLLVFV_					0	0	0		ENSG00000178789|ENST00000392621|CD300LB	ENSG00000178789|ENST00000392621|CD300LB	ENSG00000178789|ENST00000392621|CD300LB	MULTI-MSMS	A375_MHC_IP_R2	2	710.7987060546875	2	710.400107	1418.78566	-0.68102	-0.0004838	-0.4542	-0.00032267	-1.1352	-0.00080646	710.3993225272176	132.85	1.5263	133.02	132.33	133.85	0.16487					101	29	5	0	0	0	0.7362	1	52203	52203		2.9952	0.26005	1	40465000			26827	8177	19253	19408	26274	26274					0.09301949158793832
KRNRGLIIK	9	Unmodified	_KRNRGLIIK_					0	0	0			REV__ENSG00000006634|ENST00000265728|DBF4	REV__ENSG00000006634|ENST00000265728|DBF4	MSMS	A375_MHC_IP_R1	1	366.6328125	3	366.580375	1096.7193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.139	1	44.139	43.639	44.639	0								0	0	0	0.15486	1	15388	15388		7.1017	1.3183	1		+		26828	16140	19254	19409	26275	26275					0.17480501379077396
KRNYYAAIERA	11	Unmodified	_KRNYYAAIERA_					0	0	0			REV__tr|U7T073|U7T073_FUSNUPhenylalanine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheTPE=3SV=1	REV__tr|U7T073|U7T073_FUSNUPhenylalanine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheTPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	452.3124694824219	3	452.245721	1353.71533	-0.42205	-0.00019087	2.6023	0.0011769	2.1803	0.00098603	452.5809141363569	131.7	0.25327	131.7	131.53	131.78	0					6	4	2	0	0	0	1.0004	1	50729	50729		1.2148	0	1	2730200	+		26829	28669	19255	19410	26276	26276					0.052623670947014034
KRPEIISTV	9	Unmodified	_KRPEIISTV_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	A375_MHC_IP_R1	1	522.2158203125	2	521.816399	1041.61824	-0.54042	-0.000282	-0.082997	-4.3309E-05	-0.62341	-0.00032531	521.8162995553582	34.197	0.40387	34.197	34.001	34.405	0					15	7	3	0	0	0	0.061442	1	11255	11255		82.529	28.697	1	5177500			26830	3055	19256	19411	26277	26277					0.09910004885705348
KRPEIISTV	9	Unmodified	_KRPEIISTV_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	A375_MHC_IP_R2	2	522.2159423828125	2	521.816399	1041.61824	-0.8959	-0.0004675	0.03276	1.7095E-05	-0.86314	-0.0004504	521.8163595150011	33.317	0.35587	34.069	33.891	34.247	0.75225					15	6	3	0	0	0	0.20059	1	11940	11940		59.368	28.1	1	6296300			26831	3055	19256	19411	26278	26278					0.09910004885705348
KRPELPRAP	9	Unmodified	_KRPELPRAP_					0	0	0		nc|ENSG00000171703|Q15560-2|TCEA2;TUBB4B-TCEA2|1|fusion;ENSG00000171703|ENST00000343484|TCEA2	nc|ENSG00000171703|Q15560-2|TCEA2	nc|ENSG00000171703|Q15560-2|TCEA2	MULTI-MSMS	A375_MHC_IP_R1	1	355.5794372558594	3	355.217214	1062.62981	-0.016759	-5.953E-06	-0.43062	-0.00015296	-0.44737	-0.00015892	355.2170594362274	24.977	0.86334	24.977	24.647	25.511	0					53	16	5	0	0	0	0.67787	1	7353	7353		8.9762	1.0308	1	525540000			26832	7629	19257	19412	26279	26279					0.101002466996988
KRPGSGLL	8	Unmodified	_KRPGSGLL_					0	0	0		nc|ENSG00000160199|P55347-2|PKNOX1	nc|ENSG00000160199|P55347-2|PKNOX1	nc|ENSG00000160199|P55347-2|PKNOX1	MULTI-MSMS	A375_MHC_IP_R1	1	414.2595520019531	2	414.25852	826.502486	0.25366	0.00010508	-0.26212	-0.00010858	-0.0084522	-3.5014E-06	414.25838201218045	34.379	0.55416	34.379	34.154	34.708	0					31	10	4	0	0	0	0.77624	1	11233	11233		8.5933	0.68312	1	45748000			26833	14709	19258	19413	26280	26280					0.08229525825527162
KRPITQIQTFD	11	Unmodified	_KRPITQIQTFD_					0	0	0			REV__ENST00000609281.1_1_7:105926403-105926484:+|nuORF	REV__ENST00000609281.1_1_7:105926403-105926484:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	449.9850769042969	3	449.585743	1345.7354	-0.72926	-0.00032787	0.17284	7.7707E-05	-0.55642	-0.00025016	449.5858964111126	33.494	0.6581	34.246	33.942	34.6	0.75225					19	12	2	0	0	0	0.73189	1	12028	12028		8.7518	5.6795	1	4187500	+		26834	26566	19259	19414	26281	26281					0.0763611803463391
KRPKRRSNKHN	11	Unmodified	_KRPKRRSNKHN_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|122|3|sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|122|3|sense	MULTI-SECPEP	A375_MHC_IP_R1	1	474.7042236328125	3	474.283392	1419.82835	-0.83716	-0.00039705	0.59206	0.00028081	-0.2451	-0.00011625	474.28362702198984	149.33	1.2779	149.33	148.45	149.73	0					48	28	2	0	0	0	1.0015	1	56713	56713		0.094841	0.094841	1	117110	+		26835	26906	19260	19415	26282	26282					0.13522480331266706
KRPNAILKL	9	Unmodified	_KRPNAILKL_					0	0	0		nc|ENSG00000162889|P49137-2|MAPKAPK2;ENSG00000162889|ENST00000367103|MAPKAPK2	nc|ENSG00000162889|P49137-2|MAPKAPK2	nc|ENSG00000162889|P49137-2|MAPKAPK2	MULTI-SECPEP	A375_MHC_IP_R2	2	351.9695129394531	3	351.569476	1051.6866	-0.24899	-8.7536E-05	-0.20948	-7.3647E-05	-0.45847	-0.00016118	351.5693482124221	30.416	0.80876	31.134	30.86	31.669	0.71857					30	15	3	0	0	0	0.37663	1	10688	10688		36.506	13.848	1	4830900			26836	6608	19261	19416	26283	26283					0.1628229425621157
KRPNAILKL	9	Unmodified	_KRPNAILKL_					0	0	0		nc|ENSG00000162889|P49137-2|MAPKAPK2;ENSG00000162889|ENST00000367103|MAPKAPK2	nc|ENSG00000162889|P49137-2|MAPKAPK2	nc|ENSG00000162889|P49137-2|MAPKAPK2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	351.569476	1051.6866	-0.11171	-3.9274E-05	0.047512	1.6704E-05	-0.064198	-2.257E-05	351.56947150008926	31.349	0.81199	31.349	31.109	31.921	0	0.1073	0.00011189	NaN	36.506	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5247000			26837	6608	19261	19416							0.1628229425621157
KRPVIVKVL	9	Unmodified	_KRPVIVKVL_					0	0	0		nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-MSMS	A375_MHC_IP_R1	1	351.9841003417969	3	351.249855	1050.72774	0.082464	2.8965E-05	-0.31857	-0.0001119	-0.23611	-8.2932E-05	351.5839938651123	35.753	0.40905	35.753	35.573	35.982	0					19	7	3	0	0	0	0.035419	1	11931	11931		70.332	50.97	1	5994900			26838	6685	19262	19417	26284	26284					0.20440055295694037
KRPVIVKVL	9	Unmodified	_KRPVIVKVL_					0	0	0		nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-MSMS	A375_MHC_IP_R2	2	351.6496276855469	3	351.249855	1050.72774	-0.4299	-0.000151	-0.12867	-4.5197E-05	-0.55858	-0.0001962	351.249766604099	34.586	0.40618	35.35	35.119	35.525	0.76338					19	7	3	0	0	0	0.012447	1	12506	12506		93.166	73.804	1	5018400			26839	6685	19262	19417	26285	26285					0.20440055295694037
KRQRRRLQLIP	11	Unmodified	_KRQRRRLQLIP_					0	0	0			REV__ENST00000564508.2_1_16:72460469-72460685:+|nuORF	REV__ENST00000564508.2_1_16:72460469-72460685:+|nuORF	MSMS	A375_MHC_IP_R1	1	732.8438720703125	2	732.473318	1462.93208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.49	1	144.49	143.99	144.99	0								0	0	0	0.1636	1	55409	55409		0	0	1		+		26840	26218	19263	19418	26286	26286					0.21913387438939935
KRQRRRLQLIP	11	Unmodified	_KRQRRRLQLIP_					0	0	0			REV__ENST00000564508.2_1_16:72460469-72460685:+|nuORF	REV__ENST00000564508.2_1_16:72460469-72460685:+|nuORF	MSMS	A375_MHC_IP_R1	1	732.8735961914062	2	732.473318	1462.93208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.56	1	144.56	144.06	145.06	0								0	0	0	0.1636	1	55436	55436		0	0	1		+		26841	26218	19263	19418	26287	26287					0.21913387438939935
KRQRYNYWFRY	11	Unmodified	_KRQRYNYWFRY_					0	0	0			REV__RXFP1|p.H693Y|1|0.45|ENSG00000171509|chr4:158651858-158651858|C/T|missense_variant	REV__RXFP1|p.H693Y|1|0.45|ENSG00000171509|chr4:158651858-158651858|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	560.6947021484375	3	560.623303	1678.84808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.03	1	101.03	100.53	101.53	0								0	0	0	0.1636	1	37135	37135		0	0	1		+		26842	27903	19264	19419	26288	26288					0.035808115513646044
KRQWATYYFSF	11	Unmodified	_KRQWATYYFSF_					0	0	0			REV__ENST00000367166.4_1_6:155578815-155578866:-|nuORF	REV__ENST00000367166.4_1_6:155578815-155578866:-|nuORF	MSMS	A375_MHC_IP_R2	2	499.6324462890625	3	499.582221	1495.72483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.651	1	35.414	34.914	35.914	0.76338								0	0	0	0.16249	1	12519	12519		2.6312	0	1		+		26843	23959	19265	19420	26289	26289					-0.0031986461981432512
KRREEEYKWRW	11	Unmodified	_KRREEEYKWRW_					0	0	0			REV__ENSG00000198483|ENST00000355594|ANKRD35	REV__ENSG00000198483|ENST00000355594|ANKRD35	MULTI-MSMS	A375_MHC_IP_R1	1	556.3583984375	3	555.958462	1664.85356	-0.45797	-0.00025461	-0.78513	-0.0004365	-1.2431	-0.00069111	556.2923099014898	62.281	1.3315	62.281	61.686	63.018	0					64	25	4	0	0	0	0.73881	1	22696	22696		0.50596	0.41111	1	7904500	+		26844	22374	19266	19421	26290	26290					0.047724903431571875
KRREEEYKWRW	11	Unmodified	_KRREEEYKWRW_					0	0	0			REV__ENSG00000198483|ENST00000355594|ANKRD35	REV__ENSG00000198483|ENST00000355594|ANKRD35	MSMS	A375_MHC_IP_R1	1	833.3426513671875	2	833.434055	1664.85356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.88	1	103.88	103.38	104.38	0								0	0	0	0.16358	1	38146	38146		0.30703	0.30703	1		+		26845	22374	19266	19421	26291	26291					0.047724903431571875
KRREEEYKWRW	11	Unmodified	_KRREEEYKWRW_					0	0	0			REV__ENSG00000198483|ENST00000355594|ANKRD35	REV__ENSG00000198483|ENST00000355594|ANKRD35	MULTI-SECPEP	A375_MHC_IP_R1	1	555.7073364257812	3	555.958462	1664.85356	-0.45797	-0.00025461	-0.78513	-0.0004365	-1.2431	-0.00069111	556.2923099014898	62.281	1.3315	62.281	61.686	63.018	0					64	25	4	0	0	0	1.0014	1	22583	22583		0.094841	0	1	7904500	+		26846	22374	19266	19421	26292	26292					0.047724903431571875
KRREEEYKWRW	11	Unmodified	_KRREEEYKWRW_					0	0	0			REV__ENSG00000198483|ENST00000355594|ANKRD35	REV__ENSG00000198483|ENST00000355594|ANKRD35	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	555.958462	1664.85356	-1.0832	-0.00060223	-0.88017	-0.00048934	-1.9634	-0.0010916	555.9580668223373	61.703	1.059	62.449	61.869	62.928	0.74503	0.083528	-8.0204E-05	NaN	0.50596	51	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9090500	+		26847	22374	19266	19421							0.047724903431571875
KRRERELRRKH	11	Unmodified	_KRRERELRRKH_					0	0	0		ENSG00000160551|ENST00000261716|TAOK1;ENST00000578653.1_1_17:27849339-27857712:+|nuORF	ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MULTI-MSMS	A375_MHC_IP_R1	1	522.3848876953125	3	521.985346	1562.93421	-0.77483	-0.00040445	0.0094927	4.9551E-06	-0.76534	-0.00039949	521.9852204620963	134.49	1.6224	134.49	134.02	135.64	0					91	31	4	0	0	0	0.73934	2	51926	51926;52161		0	0	1	32111000			26848	6424	19267	19422	26293;26294	26293					0.17525816176703302
KRRERELRRKH	11	Unmodified	_KRRERELRRKH_					0	0	0		ENSG00000160551|ENST00000261716|TAOK1;ENST00000578653.1_1_17:27849339-27857712:+|nuORF	ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MULTI-MSMS	A375_MHC_IP_R2	2	522.3848876953125	3	521.985346	1562.93421	-0.51313	-0.00026785	-0.14058	-7.3381E-05	-0.65371	-0.00034123	521.9851596538372	133.64	1.0664	133.81	133.2	134.26	0.16487					64	20	4	0	0	0	0.73934	2	52453	52453;52690		0	0	1	16717000			26849	6424	19267	19422	26295;26296	26295					0.17525816176703302
KRRERELRRKH	11	Unmodified	_KRRERELRRKH_					0	0	0		ENSG00000160551|ENST00000261716|TAOK1;ENST00000578653.1_1_17:27849339-27857712:+|nuORF	ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MULTI-MSMS	A375_MHC_IP_R2	2	522.3848266601562	3	521.985346	1562.93421	-0.48614	-0.00025376	0.011905	6.2144E-06	-0.47424	-0.00024754	521.9852443242523	134.39	1.6786	134.53	133.98	135.66	0.13901					102	32	5	0	0	0	0.73934	2	52923	52923;53157		0	0	1	28806000			26850	6424	19267	19422	26297;26298	26297					0.17525816176703302
KRRERRQTLRW	11	Unmodified	_KRRERRQTLRW_					0	0	0		ENST00000367137.3_1_1:205780005-205782040:-|nuORF	ENST00000367137.3_1_1:205780005-205782040:-|nuORF	ENST00000367137.3_1_1:205780005-205782040:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	793.368408203125	2	792.968931	1583.92331	-0.77096	-0.00061134	0.12445	9.8682E-05	-0.64651	-0.00051266	792.9689468012051	142.53	0.40857	142.56	142.23	142.64	0.030731					13	7	2	0	0	0	0.73906	1	55713	55713		0.26902	0.26902	1	2315500			26851	11079	19268	19423	26299	26299					0.15470413802427174
KRRERRQTLRW	11	Unmodified	_KRRERRQTLRW_					0	0	0		ENST00000367137.3_1_1:205780005-205782040:-|nuORF	ENST00000367137.3_1_1:205780005-205782040:-|nuORF	ENST00000367137.3_1_1:205780005-205782040:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	792.968931	1583.92331	-0.78868	-0.0006254	-0.41082	-0.00032577	-1.1995	-0.00095117	792.9686486116824	142.46	0.45407	142.46	142.13	142.59	0	-0.048379	-0.0006573	NaN	0.26902	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1778900			26852	11079	19268	19423							0.15470413802427174
KRRIFIWLRHS	11	Unmodified	_KRRIFIWLRHS_					0	0	0			REV__ENST00000473481.1_1_10:27066118-27112155:-|nuORF	REV__ENST00000473481.1_1_10:27066118-27112155:-|nuORF	MSMS	A375_MHC_IP_R1	1	756.4547729492188	2	756.457136	1510.89972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.633	1	54.633	54.133	55.133	0								0	0	0	0.16354	1	19517	19517		0.30703	0.03801	1		+		26853	25152	19269	19424	26300	26300					0.16470600035927419
KRRIRKGRMEY	11	Unmodified	_KRRIRKGRMEY_					0	0	0		ENSG00000141570|ENST00000269385|CBX8	ENSG00000141570|ENST00000269385|CBX8	ENSG00000141570|ENST00000269385|CBX8	MSMS	A375_MHC_IP_R2	2	746.8652954101562	2	746.935711	1491.85687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.64	1	147.66	147.16	148.16	0.019913								0	0	0	0.16354	1	57386	57386		0.30703	0.30703	1				26854	5259	19270	19425	26301	26301					0.1306146191618609
KRRKFLERNK	10	Unmodified	_KRRKFLERNK_					0	0	0		ATF2|p.R363K|1|0.27|ENSG00000115966|chr2:175093158-175093158|C/T|missense_variant	ATF2|p.R363K|1|0.27|ENSG00000115966|chr2:175093158-175093158|C/T|missense_variant	ATF2|p.R363K|1|0.27|ENSG00000115966|chr2:175093158-175093158|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	687.9891967773438	2	687.925669	1373.83679	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.882	1	99.642	99.142	100.14	0.75977								0	0	0	0.15353	1	37507	37507		9.3831	4.0862	1				26855	196	19271	19426	26302	26302					0.16482034247883348
KRRKKAKRKRK	11	Unmodified	_KRRKKAKRKRK_					0	0	0			REV__ENSG00000206432|ENST00000383490|TMEM200C	REV__ENSG00000206432|ENST00000383490|TMEM200C	MSMS	A375_MHC_IP_R2	2	495.134521484375	3	495.014577	1482.0219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.55	1	59.299	58.799	59.799	0.74894								0	0	0	0.1636	1	22152	22152		0	0	1		+		26856	22595	19272	19427	26303	26303					0.3001706183811166
KRRKMWKRLKQ	11	Unmodified	_KRRKMWKRLKQ_					0	0	0			REV__ENST00000339594.8_1_7:72873876-72873927:-|nuORF	REV__ENST00000339594.8_1_7:72873876-72873927:-|nuORF	MSMS	A375_MHC_IP_R2	2	520.0139770507812	3	519.992673	1556.95619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.628	1	38.402	37.902	38.902	0.77417								0	0	0	0.1636	1	13783	13783		0	0	1		+		26857	23713	19273	19428	26304	26304					0.19998904600925016
KRRKRKLLQRH	11	Unmodified	_KRRKRKLLQRH_					0	0	0		CSNK1G2|p.S410L|1|0.33|ENSG00000133275|chr19:1980184-1980184|C/T|missense_variant	CSNK1G2|p.S410L|1|0.33|ENSG00000133275|chr19:1980184-1980184|C/T|missense_variant	CSNK1G2|p.S410L|1|0.33|ENSG00000133275|chr19:1980184-1980184|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	760.0032348632812	2	760.000034	1517.98552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.04	1	123.04	122.54	123.54	0								0	0	0	0.16353	1	45916	45916		0.35063	0.35063	1				26858	677	19274	19429	26305	26305					0.24724184941442218
KRRKRLLILA	10	Unmodified	_KRRKRLLILA_					0	0	0			REV__ENSG00000092445|ENST00000263798|TYRO3	REV__ENSG00000092445|ENST00000263798|TYRO3	MSMS	A375_MHC_IP_R2	2	422.942138671875	3	422.966341	1265.87719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.256	1	19.859	19.359	20.359	0.60308								0	0	0	0.15637	1	5896	5896		0.13989	0.13989	1		+		26859	16972	19275	19430	26306	26306					0.25489000638344805
KRRLWQKFAR	10	Unmodified	_KRRLWQKFAR_					0	0	0			REV__nc|ENSG00000117477|Q5TID7-3|CCDC181	REV__nc|ENSG00000117477|Q5TID7-3|CCDC181	MULTI-MSMS	A375_MHC_IP_R1	1	695.3209228515625	2	694.922929	1387.83131	-0.97007	-0.00067412	-1.9204	-0.0013345	-2.8905	-0.0020087	694.9213767117848	143.61	0.24394	143.61	143.54	143.78	0					6	4	2	0	0	0	0.72658	1	55113	55113		0.40072	0.050084	1	415960	+		26860	18009	19276	19431	26307	26307					0.15290355456068028
KRRQWNRWRQH	11	Unmodified	_KRRQWNRWRQH_					0	0	0			REV__ENST00000291074.9_2_17:505039-505090:-|nuORF	REV__ENST00000291074.9_2_17:505039-505090:-|nuORF	MSMS	A375_MHC_IP_R1	1	825.8868408203125	2	825.951072	1649.88759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.43	1	124.43	123.93	124.93	0								0	0	0	0.16337	1	46842	46842		1.1933	1.1933	1		+		26861	23362	19277	19432	26308	26308					0.08864376345445635
KRRQWNRWRQH	11	Unmodified	_KRRQWNRWRQH_					0	0	0			REV__ENST00000291074.9_2_17:505039-505090:-|nuORF	REV__ENST00000291074.9_2_17:505039-505090:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	551.5189819335938	3	550.969807	1649.88759	-0.72186	-0.00039772	-0.98703	-0.00054382	-1.7089	-0.00094155	551.3035991161572	91.123	0.25266	91.123	90.997	91.249	0					6	4	2	0	0	0	1.0014	1	33497	33497		0	0	1	595210	+		26862	23362	19277	19432	26309	26309					0.08864376345445635
KRRQWNRWRQH	11	Unmodified	_KRRQWNRWRQH_					0	0	0			REV__ENST00000291074.9_2_17:505039-505090:-|nuORF	REV__ENST00000291074.9_2_17:505039-505090:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	826.3509521484375	2	825.951072	1649.88759	-0.22496	-0.00018581	0.41325	0.00034132	0.18829	0.00015551	825.951430153635	110.69	0.61174	110.69	110.29	110.9	0					13	11	2	0	0	0	1.0014	1	40628	40628		0.35063	0.35063	1	3491400	+		26863	23362	19277	19432	26310	26310					0.08864376345445635
KRRRFVWTFWR	11	Unmodified	_KRRRFVWTFWR_					0	0	0		ENST00000479578.5_1_1:110198981-110200495:+|nuORF	ENST00000479578.5_1_1:110198981-110200495:+|nuORF	ENST00000479578.5_1_1:110198981-110200495:+|nuORF	MSMS	A375_MHC_IP_R1	1	546.6458129882812	3	546.647782	1636.92152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.55	1	135.55	135.05	136.05	0								0	0	0	0.16358	1	52246	52246		0.094841	0.011491	1				26864	12478	19278	19433	26311	26311					0.12853404784482336
KRRRGAGEEHQ	11	Unmodified	_KRRRGAGEEHQ_					0	0	0			REV__ENSG00000134815|ENST00000328771|DHX34	REV__ENSG00000134815|ENST00000328771|DHX34	MSMS	A375_MHC_IP_R1	1	441.69781494140625	3	441.904469	1322.69158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.446	1	17.446	16.946	17.946	0								0	0	0	0.16354	1	4098	4098		0.08335	0	1		+		26865	18803	19279	19434	26312	26312					0.043139463808984146
KRRRHEREKK	10	Unmodified	_KRRRHEREKK_					0	0	0		TCHH|p.Q984H|1|0.66|ENSG00000159450|chr1:152110265-152110265|C/A|missense_variant	TCHH|p.Q984H|1|0.66|ENSG00000159450|chr1:152110265-152110265|C/A|missense_variant	TCHH|p.Q984H|1|0.66|ENSG00000159450|chr1:152110265-152110265|C/A|missense_variant	MSMS	A375_MHC_IP_R1	1	711.826904296875	2	711.929274	1421.844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.1	1	145.1	144.6	145.6	0								0	0	0	0.15628	1	55631	55631		0.45834	0	1				26866	29311	19280	19435	26313	26313					0.14994766848303698
KRRRKRCRRRW	11	Unmodified	_KRRRKRCRRRW_					0	0	0		ENST00000319296.9_1_16:30419378-30419444:+|nuORF	ENST00000319296.9_1_16:30419378-30419444:+|nuORF	ENST00000319296.9_1_16:30419378-30419444:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	414.2995300292969	4	415.006468	1655.99677	0.6154	0.0002554	-2.2235	-0.00092276	-1.6081	-0.00066736	415.2559703020179	45.433	0.24993	45.433	45.284	45.534	0					6	4	2	0	0	0	1.0015	1	15891	15891		0.08335	0.08335	1	1553200			26867	10681	19281	19436	26314	26314					0.19500683763908455
KRRRKRCRRRW	11	Unmodified	_KRRRKRCRRRW_					0	0	0		ENST00000319296.9_1_16:30419378-30419444:+|nuORF	ENST00000319296.9_1_16:30419378-30419444:+|nuORF	ENST00000319296.9_1_16:30419378-30419444:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	415.6423034667969	4	415.006468	1655.99677	0.03945	1.6372E-05	-2.4973	-0.0010364	-2.4579	-0.00102	415.0058050386101	44.366	0.30461	45.135	44.934	45.239	0.7691					8	5	2	0	0	0	1.0014	1	16573	16573		0.45452	0.45452	1	1019600			26868	10681	19281	19436	26315	26315					0.19500683763908455
KRRRRFWIEFR	11	Unmodified	_KRRRRFWIEFR_					0	0	0			REV__ENSG00000153404|ENST00000637938|PLEKHG4B	REV__ENSG00000153404|ENST00000637938|PLEKHG4B	MSMS	A375_MHC_IP_R2	2	550.7467041015625	3	550.65857	1648.95388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.98	1	131.2	130.7	131.7	0.2142								0	0	0	0.16358	1	51527	51527		0.094841	0.094841	1		+		26869	19841	19282	19437	26316	26316					0.1553619218748281
KRRRRHRLRSL	11	Unmodified	_KRRRRHRLRSL_					0	0	0		ENST00000492155.5_1_10:13749216-13749624:-|nuORF	ENST00000492155.5_1_10:13749216-13749624:-|nuORF	ENST00000492155.5_1_10:13749216-13749624:-|nuORF	MSMS	A375_MHC_IP_R1	1	511.9886779785156	3	511.997697	1532.97126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.654	1	38.654	38.154	39.154	0								0	0	0	0.16358	1	13135	13135		0.08335	0	1				26870	12668	19283	19438	26317	26317					0.22609532513160957
KRRRRHRLRSL	11	Unmodified	_KRRRRHRLRSL_					0	0	0		ENST00000492155.5_1_10:13749216-13749624:-|nuORF	ENST00000492155.5_1_10:13749216-13749624:-|nuORF	ENST00000492155.5_1_10:13749216-13749624:-|nuORF	MSMS	A375_MHC_IP_R2	2	511.9881896972656	3	511.997697	1532.97126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.951	1	42.726	42.226	43.226	0.77451								0	0	0	0.16358	1	15591	15591		0.08335	0	1				26871	12668	19283	19438	26318	26318					0.22609532513160957
KRRRRLIKKLF	11	Unmodified	_KRRRRLIKKLF_					0	0	0			REV__ENST00000320876.10_2_18:2688638-2694582:+|nuORF	REV__ENST00000320876.10_2_18:2688638-2694582:+|nuORF	MSMS	A375_MHC_IP_R1	1	757.7401733398438	2	757.517528	1513.0205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.8	1	144.8	144.3	145.3	0								0	0	0	0.16353	1	55522	55522		0.35063	0.35063	1		+		26872	23563	19284	19439	26319	26319					0.28451427749382674
KRRRRLVIYIK	11	Unmodified	_KRRRRLVIYIK_					0	0	0			REV__ENST00000539420.1_1_11:113286028-113288807:-|nuORF	REV__ENST00000539420.1_1_11:113286028-113288807:-|nuORF	MSMS	A375_MHC_IP_R2	2	751.2689208984375	2	751.001711	1499.98887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.135	1	96.885	96.385	97.385	0.75045								0	0	0	0.1636	1	36506	36506		0	0	1		+		26873	19673	19285	19440	26320	26320					0.25887434995456715
KRRRRLVIYIK	11	Unmodified	_KRRRRLVIYIK_					0	0	0			REV__ENST00000539420.1_1_11:113286028-113288807:-|nuORF	REV__ENST00000539420.1_1_11:113286028-113288807:-|nuORF	MSMS	A375_MHC_IP_R2	2	751.0673217773438	2	751.001711	1499.98887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.243	1	96.993	96.493	97.493	0.75045								0	0	0	0.1636	1	36544	36544		0	0	1		+		26874	19673	19285	19440	26321	26321					0.25887434995456715
KRRRRPKPDG	10	Unmodified	_KRRRRPKPDG_					0	0	0			REV__ENST00000522332.1_1_8:22056536-22056896:+|nuORF	REV__ENST00000522332.1_1_8:22056536-22056896:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	422.9939880371094	3	422.593566	1264.75887	0.061059	2.5803E-05	0.73405	0.00031021	0.79511	0.00033601	422.59376118669496	139.82	0.56464	139.88	139.7	140.26	0.059906					14	10	2	0	0	0	0.72591	1	54767	54767		0.69767	0	1	2369100	+		26875	25730	19286	19441	26322	26322					0.13708021382512925
KRRRRRQLINR	11	Unmodified	_KRRRRRQLINR_					0	0	0			REV__ENST00000380888.4_1_20:29521812-29522016:-|nuORF	REV__ENST00000380888.4_1_20:29521812-29522016:-|nuORF	MSMS	A375_MHC_IP_R1	1	776.7769165039062	2	776.49819	1550.98183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.55	1	144.55	144.05	145.05	0								0	0	0	0.1636	1	55431	55431		0	0	1		+		26876	24227	19287	19442	26323	26323					0.22837515167589117
KRRRRRQLINR	11	Unmodified	_KRRRRRQLINR_					0	0	0			REV__ENST00000380888.4_1_20:29521812-29522016:-|nuORF	REV__ENST00000380888.4_1_20:29521812-29522016:-|nuORF	MSMS	A375_MHC_IP_R1	1	776.8992919921875	2	776.49819	1550.98183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.61	1	144.61	144.11	145.11	0								0	0	0	0.1636	1	55454	55454		0	0	1		+		26877	24227	19287	19442	26324	26324					0.22837515167589117
KRRRRRQLINR	11	Unmodified	_KRRRRRQLINR_					0	0	0			REV__ENST00000380888.4_1_20:29521812-29522016:-|nuORF	REV__ENST00000380888.4_1_20:29521812-29522016:-|nuORF	MSMS	A375_MHC_IP_R2	2	776.77685546875	2	776.49819	1550.98183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.6	1	144.62	144.12	145.12	0.024414								0	0	0	0.1636	1	56477	56477		0	0	1		+		26878	24227	19287	19442	26325	26325					0.22837515167589117
KRRRRRQLINR	11	Unmodified	_KRRRRRQLINR_					0	0	0			REV__ENST00000380888.4_1_20:29521812-29522016:-|nuORF	REV__ENST00000380888.4_1_20:29521812-29522016:-|nuORF	MSMS	A375_MHC_IP_R2	2	776.8994750976562	2	776.49819	1550.98183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.63	1	144.65	144.15	145.15	0.024414								0	0	0	0.1636	1	56488	56488		0	0	1		+		26879	24227	19287	19442	26326	26326					0.22837515167589117
KRRRRRRRQLI	11	Unmodified	_KRRRRRRRQLI_					0	0	0			REV__ENST00000607809.5_1_12:54472874-54474119:-|nuORF	REV__ENST00000607809.5_1_12:54472874-54474119:-|nuORF	MSMS	A375_MHC_IP_R2	2	532.115234375	3	532.020613	1593.04001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.666	1	86.402	85.902	86.902	0.73601								0	0	0	0.16334	1	32572	32572		0.45452	0.37117	1		+		26880	26553	19288	19443	26327	26327					0.2672119681287768
KRRRRRRRRRS	11	Unmodified	_KRRRRRRRRRS_					0	0	0			REV__ENSG00000184205|ENST00000375442|TSPYL2	REV__ENSG00000184205|ENST00000375442|TSPYL2	MSMS	A375_MHC_IP_R2	2	819.9669189453125	2	820.031054	1638.04756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.94	1	118.55	118.05	119.05	0.60909								0	0	0	0.1636	1	44708	44708		0	0	1		+		26881	21802	19289	19444	26328	26328					0.2540534913312058
KRRRRVRLLIF	11	Unmodified	_KRRRRVRLLIF_					0	0	0			REV__nc|ENSG00000130202|Q92692-2|NECTIN2	REV__nc|ENSG00000130202|Q92692-2|NECTIN2	MSMS	A375_MHC_IP_R1	1	756.649169921875	2	757.007328	1512.0001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.97	1	103.97	103.47	104.47	0								0	0	0	0.1636	1	38180	38180		0	0	1		+		26882	27219	19290	19445	26329	26329					0.2645825708959819
KRRRRWIQRRP	11	Unmodified	_KRRRRWIQRRP_					0	0	0		ENST00000257749.8_2_6:90661229-90661412:-|nuORF	ENST00000257749.8_2_6:90661229-90661412:-|nuORF	ENST00000257749.8_2_6:90661229-90661412:-|nuORF	MSMS	A375_MHC_IP_R1	1	804.501708984375	2	804.500733	1606.98691	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.74	1	118.74	118.24	119.24	0								0	0	0	0.1636	1	43792	43792		0	0	1				26883	10250	19291	19446	26330	26330					0.20769819030192593
KRRTTCRRT	9	Unmodified	_KRRTTCRRT_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MSMS	A375_MHC_IP_R1	1	393.2523498535156	3	393.228007	1176.66219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.026	1	38.026	37.526	38.526	0								0	0	0	0.15486	1	12862	12862		7.1017	1.3183	1		+		26884	20554	19292	19447	26331	26331					0.080927108310334
KRRVFFRNIKI	11	Unmodified	_KRRVFFRNIKI_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MSMS	A375_MHC_IP_R1	1	738.9674072265625	2	738.967337	1475.92012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.042	1	98.042	97.542	98.542	0								0	0	0	0.1636	1	36020	36020		0	0	1				26885	4941	19293	19448	26332	26332					0.20119770695760053
KRRWEEEYTVR	11	Unmodified	_KRRWEEEYTVR_					0	0	0		nc|ENSG00000010295|Q0D2I5|IFFO1;nc|ENSG00000010295|Q0D2I5-7|IFFO1;nc|ENSG00000010295|Q0D2I5-4|IFFO1;nc|ENSG00000010295|Q0D2I5-5|IFFO1;ENSG00000010295|ENST00000619571|IFFO1	nc|ENSG00000010295|Q0D2I5|IFFO1	nc|ENSG00000010295|Q0D2I5|IFFO1	MULTI-MSMS	A375_MHC_IP_R2	2	776.80322265625	2	776.404963	1550.79537	-0.99772	-0.00077463	-0.70852	-0.0005501	-1.7062	-0.0013247	776.4044488414498	67.047	0.50648	67.784	67.546	68.052	0.73631					18	9	3	0	0	0	0.73672	1	25402	25402		2.4985	1.3051	1	3823600			26886	977	19294	19449	26333	26333					0.042008086978967185
KRRWRKKRRKE	11	Unmodified	_KRRWRKKRRKE_					0	0	0		nc|ENSG00000290320|P0DW85|H2BN1	nc|ENSG00000290320|P0DW85|H2BN1	nc|ENSG00000290320|P0DW85|H2BN1	MSMS	A375_MHC_IP_R2	2	814.0661010742188	2	814.016215	1626.01788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.46	1	140.51	140.01	141.01	0.04216								0	0	0	0.1636	1	54985	54985		0	0	1				26887	14953	19295	19450	26334	26334					0.22990972344405236
KRSDGLLQL	9	Unmodified	_KRSDGLLQL_					0	0	0		ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	MULTI-SECPEP	A375_MHC_IP_R2	2	514.891845703125	2	515.306198	1028.59784	-0.69094	-0.00035605	0.082444	4.2484E-05	-0.6085	-0.00031356	515.3062071994221	48.197	0.95837	48.955	48.578	49.536	0.75737					47	18	4	0	0	0	0.43207	1	18153	18153		40.239	11.158	1	84767000			26888	5066	19296	19451	26335	26335					0.08468834225914179
KRSKRPTVPH	10	Unmodified	_KRSKRPTVPH_					0	0	0		ENST00000369232.2_1_6:99949817-99958096:-|nuORF;nc|ENSG00000123552|Q70EL2-2|USP45;ENSG00000123552|ENST00000500704|USP45	ENST00000369232.2_1_6:99949817-99958096:-|nuORF	ENST00000369232.2_1_6:99949817-99958096:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1206.1229248046875	1	1205.72255	1204.71527	0.38984	0.00047003	-0.22553	-0.00027192	0.16431	0.00019811	1205.7219607715315	149.55	1.6205	149.57	148.32	149.94	0.01825					123	55	3	0	0	0	0.72669	1	58104	58104		0.35063	0.043601	1	407170			26889	3852	19297	19452	26336	26336					0.12110411885373651
KRSLPLFRL	9	Unmodified	_KRSLPLFRL_					0	0	0		ENST00000321521.13_1_5:102544671-102544749:+|nuORF	ENST00000321521.13_1_5:102544671-102544749:+|nuORF	ENST00000321521.13_1_5:102544671-102544749:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	377.6448059082031	3	377.244992	1128.71315	0.37046	0.00013975	-0.50591	-0.00019085	-0.13545	-5.1099E-05	377.2447312838809	61.893	0.46049	61.893	61.636	62.097	0					13	8	2	0	0	0	0.61998	1	22357	22357		9.544	1.935	1	1610600			26890	10698	19298	19453	26337	26337					0.15393983147555446
KRSSGNCC	8	Unmodified	_KRSSGNCC_					0	0	0			REV__HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|164|3|sense	REV__HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|164|3|sense	MULTI-MSMS	A375_MHC_IP_R1	1	857.6994018554688	1	854.360732	853.353456	-0.67153	-0.00057373	-1.1727	-0.0010019	-1.8442	-0.0015756	854.3595589048653	144.74	0.17188	144.74	144.65	144.82	0					10	3	4	0	0	0	0.77839	1	55506	55506		0.79363	0	1	10816000	+		26891	26738	19299	19454	26338	26338					-0.079086911311947
KRSSGNCC	8	Unmodified	_KRSSGNCC_					0	0	0			REV__HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|164|3|sense	REV__HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|164|3|sense	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	854.360732	853.353456	-0.67153	-0.00057373	-1.1727	-0.0010019	-1.8442	-0.0015756	854.3595589048653	144.74	0.17188	144.74	144.65	144.82	0	-0.018853	2.3761E-05	NaN	0.79363	10	3	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10816000	+		26892	26738	19299	19454							-0.079086911311947
KRSSGNCC	8	Unmodified	_KRSSGNCC_					0	0	0			REV__HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|164|3|sense	REV__HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|164|3|sense	MULTI-MATCH	A375_MHC_IP_R2	2		1	854.360732	853.353456	-0.46187	-0.0003946	-1.2162	-0.0010391	-1.6781	-0.0014337	854.3594948691557	144.76	0.15521	144.78	144.69	144.84	0.021408	0.018853	-1.3395E-05	NaN	0.79363	9	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12658000	+		26893	26738	19299	19454							-0.079086911311947
KRTFKSSIF	9	Unmodified	_KRTFKSSIF_					0	0	0			REV__BNIPL|p.R309W|1|0.35|ENSG00000163141|chr1:151045870-151045870|C/T|missense_variant	REV__BNIPL|p.R309W|1|0.35|ENSG00000163141|chr1:151045870-151045870|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	557.7125854492188	2	557.324391	1112.63423	-0.73876	-0.00041173	1.3302	0.00074136	0.59145	0.00032963	557.3249634883623	38.397	0.20699	38.397	38.319	38.526	0					5	3	2	0	0	0	0.69507	1	13016	13016		19.257	3.4098	1	1229800	+		26894	15519	19300	19455	26339	26339					0.08241711122605011
KRTLHLEEES	10	Unmodified	_KRTLHLEEES_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-MSMS	A375_MHC_IP_R2	2	1242.048095703125	1	1241.64844	1240.64116	0.43203	0.00053643	-0.35937	-0.00044621	0.072669	9.023E-05	1241.6481172585811	143.64	0.35165	143.66	143.49	143.84	0.024414					19	6	4	0	0	0	0.70496	1	56143	56143		10.074	1.3285	1	4790200	+		26895	22171	19301	19456	26340	26340					0.03046979212513179
KRTLLIKTV	9	Unmodified	_KRTLLIKTV_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000487938.5_1_10:17278234-17279267:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R2	2	358.3128662109375	3	357.913131	1070.71756	-0.68399	-0.00024481	0.12043	4.3103E-05	-0.56356	-0.0002017	357.9131347060784	28.459	0.2035	29.138	29.01	29.214	0.67857					5	3	2	0	0	0	0.0844	1	9854	9854		53.47	17.075	1	7267400			26896	1093	19302	19457	26341	26341					0.18503447570446951
KRTQQEYYERE	11	Unmodified	_KRTQQEYYERE_					0	0	0		nc|ENSG00000111879|Q8NB25-2|FAM184A;FAM184A|p.Q613Hfs*10|1|0.23|ENSG00000111879|chr6:119003599-119003599|T/-|frameshift_variant;nc|ENSG00000111879|Q8NB25-3|FAM184A;ENSG00000111879|ENST00000338891|FAM184A;nc|ENSG00000111879|Q8NB25-4|FAM184A	nc|ENSG00000111879|Q8NB25-2|FAM184A	nc|ENSG00000111879|Q8NB25-2|FAM184A	MULTI-MSMS	A375_MHC_IP_R1	1	510.9826354980469	3	510.58295	1528.72702	-0.55816	-0.00028498	-0.25563	-0.00013052	-0.81379	-0.00041551	510.58285628743	32.178	0.96546	32.178	31.921	32.887	0					47	18	3	0	0	0	0.73647	1	10341	10341		1.1098	1.1098	1	115110000			26897	14545	19303	19458	26342	26342					-0.016194806726389288
KRTQQEYYERE	11	Unmodified	_KRTQQEYYERE_					0	0	0		nc|ENSG00000111879|Q8NB25-2|FAM184A;FAM184A|p.Q613Hfs*10|1|0.23|ENSG00000111879|chr6:119003599-119003599|T/-|frameshift_variant;nc|ENSG00000111879|Q8NB25-3|FAM184A;ENSG00000111879|ENST00000338891|FAM184A;nc|ENSG00000111879|Q8NB25-4|FAM184A	nc|ENSG00000111879|Q8NB25-2|FAM184A	nc|ENSG00000111879|Q8NB25-2|FAM184A	MULTI-MSMS	A375_MHC_IP_R2	2	510.9741516113281	3	510.58295	1528.72702	-0.77404	-0.00039521	0.060863	3.1076E-05	-0.71318	-0.00036414	510.5829836372443	31.487	1.1208	32.206	31.821	32.942	0.71857					58	21	5	0	0	0	0.73647	1	11160	11160		1.1098	0	1	131910000			26898	14545	19303	19458	26343	26343					-0.016194806726389288
KRTWLWSV	8	Unmodified	_KRTWLWSV_					0	0	0			REV__ENST00000375592.7_1_1:16632408-16678758:-|nuORF	REV__ENST00000375592.7_1_1:16632408-16678758:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	359.42828369140625	3	359.206426	1074.59745	0.2122	7.6223E-05	-0.2798	-0.00010051	-0.067605	-2.4284E-05	359.2062460601005	56.547	0.96647	56.547	56.244	57.211	0					32	18	3	0	0	0	0.7779	1	20511	20511		1.6526	0	1	5250200	+		26899	24131	19304	19459	26344	26344					0.06313459296711699
KRTWYKKF	8	Unmodified	_KRTWYKKF_					0	0	0		ENSG00000154175|ENST00000471714|ABI3BP;nc|ENSG00000154175|Q7Z7G0-3|ABI3BP;ENST00000497021.1_1_3:100471523-100484734:-|nuORF;nc|ENSG00000154175|Q7Z7G0-2|ABI3BP;ENST00000470336.5_1_3:100469341-100565327:-|nuORF;nc|ENSG00000154175|Q7Z7G0-4|ABI3BP;nc|ENSG00000154175|Q7Z7G0|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	MULTI-MSMS	A375_MHC_IP_R1	1	386.6258544921875	3	386.225709	1155.6553	0.4216	0.00016283	-0.18651	-7.2036E-05	0.23509	9.0798E-05	386.22562438796655	110.16	0.40556	110.16	109.93	110.34	0					12	7	2	0	0	0	0.7762	1	40410	40410		8.7454	1.1365	1	1962300			26900	6068	19305	19460	26345	26345					0.08369721222129556
KRTWYKKF	8	Unmodified	_KRTWYKKF_					0	0	0		ENSG00000154175|ENST00000471714|ABI3BP;nc|ENSG00000154175|Q7Z7G0-3|ABI3BP;ENST00000497021.1_1_3:100471523-100484734:-|nuORF;nc|ENSG00000154175|Q7Z7G0-2|ABI3BP;ENST00000470336.5_1_3:100469341-100565327:-|nuORF;nc|ENSG00000154175|Q7Z7G0-4|ABI3BP;nc|ENSG00000154175|Q7Z7G0|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	MULTI-MATCH	A375_MHC_IP_R2	2		3	386.225709	1155.6553	-0.062446	-2.4118E-05	0.23525	9.086E-05	0.17281	6.6742E-05	386.225767851313	109.03	0.46127	109.78	109.52	109.98	0.74683	-0.19134	0.00034287	NaN	8.7454	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	766150			26901	6068	19305	19460							0.08369721222129556
KRTYINLKL	9	Unmodified	_KRTYINLKL_					0	0	0		ENST00000536703.5_1_12:75875809-75892529:+|nuORF	ENST00000536703.5_1_12:75875809-75892529:+|nuORF	ENST00000536703.5_1_12:75875809-75892529:+|nuORF	MSMS	A375_MHC_IP_R2	2	383.612060546875	3	383.576519	1147.70773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.009	1	44.778	44.278	45.278	0.7691								0	0	0	0.15486	1	16415	16415		10.151	1.1743	1				26902	13240	19306	19461	26346	26346					0.1397825956505585
KRVELCFGI	9	Unmodified	_KRVELCFGI_					0	0	0		MYO3B|p.G827R|1|0.38|ENSG00000071909|chr2:170405592-170405592|G/A|missense_variant	MYO3B|p.G827R|1|0.38|ENSG00000071909|chr2:170405592-170405592|G/A|missense_variant	MYO3B|p.G827R|1|0.38|ENSG00000071909|chr2:170405592-170405592|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	355.2610168457031	3	355.535555	1063.58484	-0.63854	-0.00022702	2.1331	0.00075841	1.4946	0.00053138	355.5363958325144	25	1.0185	25.644	25.414	26.433	0.64368					39	19	3	0	0	0	0.59098	1	8458	8458		20.581	13.951	1	63645000			26903	14440	19307	19462	26347	26347					0.05558679842147285
KRVFLIDLN	9	Unmodified	_KRVFLIDLN_					0	0	0		ENSG00000117751|ENST00000311772|PPP1R8;ENST00000236412.11_1_1:28157683-28169749:+|nuORF	ENSG00000117751|ENST00000311772|PPP1R8	ENSG00000117751|ENST00000311772|PPP1R8	MULTI-SECPEP	A375_MHC_IP_R2	2	372.6240539550781	3	373.229119	1116.66553	0.15935	5.9475E-05	-0.2734	-0.00010204	-0.11404	-4.2565E-05	373.2288410373407	49.859	0.56013	50.613	50.244	50.804	0.75406					13	10	2	0	0	0	0.69507	1	18748	18748		13.615	6.5131	1	1622600			26904	3511	19308	19463	26348	26348					0.11186284156724469
KRVLIRVEDKY	11	Unmodified	_KRVLIRVEDKY_					0	0	0			REV__tr|U7SNJ0|U7SNJ0_FUSNUPhosphoglucosaminemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmMPE=3SV=1	REV__tr|U7SNJ0|U7SNJ0_FUSNUPhosphoglucosaminemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmMPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	355.5793762207031	4	355.46741	1417.84053	-0.64835	-0.00023047	-1.3756	-0.000489	-2.024	-0.00071947	355.4667969559906	25.169	0.1541	25.812	25.719	25.873	0.64368					4	2	2	0	0	0	0.99681	1	8396	8396		4.4062	0.28952	1	949380	+		26905	28330	19309	19464	26349	26349					0.14832659231092293
KRVLLRHTKE	10	Unmodified	_KRVLLRHTKE_					0	0	0		nc|ENSG00000147081|Q5JQC9-2|AKAP4;ENSG00000147081|ENST00000358526|AKAP4	nc|ENSG00000147081|Q5JQC9-2|AKAP4	nc|ENSG00000147081|Q5JQC9-2|AKAP4	MULTI-MSMS	A375_MHC_IP_R1	1	640.8004760742188	2	640.401496	1278.78844	-0.96945	-0.00062083	0.019036	1.2191E-05	-0.95041	-0.00060864	640.4016307111515	145.18	0.28403	145.18	145.11	145.39	0					21	15	2	0	0	0	0.72645	1	55676	55676		0.45834	0	1	184800			26906	5655	19310	19465	26350	26350					0.1601954060799926
KRVLLRHTKE	10	Unmodified	_KRVLLRHTKE_					0	0	0		nc|ENSG00000147081|Q5JQC9-2|AKAP4;ENSG00000147081|ENST00000358526|AKAP4	nc|ENSG00000147081|Q5JQC9-2|AKAP4	nc|ENSG00000147081|Q5JQC9-2|AKAP4	MULTI-MATCH	A375_MHC_IP_R2	2		2	640.401496	1278.78844	-0.55467	-0.00035521	-0.8917	-0.00057105	-1.4464	-0.00092626	640.4009199244507	145.21	0.31656	145.23	145.09	145.41	0.021408	0.024634	-0.00070373	NaN	0.45834	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258990			26907	5655	19310	19465							0.1601954060799926
KRVRAIWIWIC	11	Unmodified	_KRVRAIWIWIC_					0	0	0		KY|p.E184K|1|0.39|ENSG00000174611|chr3:134620791-134620791|C/T|missense_variant	KY|p.E184K|1|0.39|ENSG00000174611|chr3:134620791-134620791|C/T|missense_variant	KY|p.E184K|1|0.39|ENSG00000174611|chr3:134620791-134620791|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	482.0175476074219	3	481.951703	1442.83328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.09	1	141.09	140.59	141.59	0								0	0	0	0.16358	1	54168	54168		0.094841	0	1				26908	14244	19311	19466	26351	26351					0.1295764814967697
KRVRAIWIWIC	11	Unmodified	_KRVRAIWIWIC_					0	0	0		KY|p.E184K|1|0.39|ENSG00000174611|chr3:134620791-134620791|C/T|missense_variant	KY|p.E184K|1|0.39|ENSG00000174611|chr3:134620791-134620791|C/T|missense_variant	KY|p.E184K|1|0.39|ENSG00000174611|chr3:134620791-134620791|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	482.01812744140625	3	481.951703	1442.83328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.78	1	137.86	137.36	138.36	0.083969								0	0	0	0.16358	1	54059	54059		0.094841	0	1				26909	14244	19311	19466	26352	26352					0.1295764814967697
KRVRNLRH	8	Unmodified	_KRVRNLRH_					0	0	0		PRAMEF6|p.D444N|2|0.11|ENSG00000232423|chr1:12938776-12938776|C/T|missense_variant	PRAMEF6|p.D444N|2|0.11|ENSG00000232423|chr1:12938776-12938776|C/T|missense_variant	PRAMEF6|p.D444N|2|0.11|ENSG00000232423|chr1:12938776-12938776|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	539.8847045898438	2	539.838865	1077.66318	-0.66003	-0.00035631	0.13288	7.1735E-05	-0.52715	-0.00028458	539.8390019168556	147.41	0.23016	147.42	147.35	147.58	0.019913					40	27	2	0	0	0	0.77842	1	57321	57321		0.69038	0	1	149560			26910	15220	19312	19467	26353	26353					0.12745293262264568
KRVRPTPEP	9	Unmodified	_KRVRPTPEP_					0	0	0			REV__ENSG00000106624|ENST00000223357|AEBP1	REV__ENSG00000106624|ENST00000223357|AEBP1	MSMS	A375_MHC_IP_R2	2	540.3846435546875	2	540.31964	1078.62473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.91	1	137.99	137.49	138.49	0.083969								0	0	0	0.15486	1	54104	54104		4.3292	0.73274	1		+		26911	17457	19313	19468	26354	26354					0.0885594283708997
KRVSEWRLRQA	11	Unmodified	_KRVSEWRLRQA_					0	0	0			REV__ENST00000551766.5_1_16:22431078-22431231:-|nuORF	REV__ENST00000551766.5_1_16:22431078-22431231:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	476.67706298828125	3	476.944265	1427.81096	-0.44913	-0.00021421	-1.1449	-0.00054606	-1.594	-0.00076027	476.943727677567	133.77	1.3243	133.93	133.25	134.57	0.16487					30	25	2	0	0	0	0.73881	1	52518	52518		0.50596	0.051438	1	3437200	+		26912	26046	19314	19469	26355	26355					0.1141714000561933
KRWLGKLRRKR	11	Unmodified	_KRWLGKLRRKR_					0	0	0		ENSG00000224109|ENST00000417339|CENPVL3	ENSG00000224109|ENST00000417339|CENPVL3	ENSG00000224109|ENST00000417339|CENPVL3	MSMS	A375_MHC_IP_R2	2	748.9006958007812	2	748.991678	1495.9688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.2	1	93.939	93.439	94.439	0.73902								0	0	0	0.1636	1	35434	35434		0	0	1				26913	9690	19315	19470	26356	26356					0.2406568405544931
KRWQRLQSQVI	11	Unmodified	_KRWQRLQSQVI_					0	0	0		EMILIN2|p.E672K|1|0.27|ENSG00000132205|chr18:2892141-2892141|G/A|missense_variant	EMILIN2|p.E672K|1|0.27|ENSG00000132205|chr18:2892141-2892141|G/A|missense_variant	EMILIN2|p.E672K|1|0.27|ENSG00000132205|chr18:2892141-2892141|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	480.69537353515625	3	481.284398	1440.83137	-0.60882	-0.00029301	-1.5503	-0.00074614	-2.1591	-0.0010392	481.6179071181381	131.22	0.35214	131.22	131.07	131.43	0					13	6	3	0	0	0	0.99921	1	50570	50570		0.45452	0.046251	1	2113600			26914	835	19316	19471	26357	26357					0.128583106654105
KRWWEYHVQYL	11	Unmodified	_KRWWEYHVQYL_					0	0	0			REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MSMS	A375_MHC_IP_R2	2	536.7116088867188	3	536.60877	1606.80448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.604	1	71.338	70.838	71.838	0.73421								0	0	0	0.16351	1	26764	26764		0.45452	0	1		+		26915	19903	19317	19472	26358	26358					0.02535202054241381
KRWWPRNRDSK	11	Unmodified	_KRWWPRNRDSK_					0	0	0			REV__ENST00000497580.5_1_9:128094832-128103560:+|nuORF	REV__ENST00000497580.5_1_9:128094832-128103560:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	510.973388671875	3	510.279647	1527.81711	-1.2271	-0.00062617	-0.34365	-0.00017536	-1.5708	-0.00080154	510.2794392886354	29.761	0.3523	30.459	30.236	30.588	0.69872					9	6	2	0	0	0	1.0012	1	10404	10404		1.1098	1.1098	1	2714700	+		26916	20562	19318	19473	26359	26359					0.07431658237101146
KRWWQRRLRLL	11	Unmodified	_KRWWQRRLRLL_					0	0	0		ENST00000250937.7_1_19:3496808-3500628:-|nuORF	ENST00000250937.7_1_19:3496808-3500628:-|nuORF	ENST00000250937.7_1_19:3496808-3500628:-|nuORF	MSMS	A375_MHC_IP_R2	2	537.705322265625	3	537.667066	1609.97937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.442	1	93.181	92.681	93.681	0.73902								0	0	0	0.16334	1	35156	35156		1.3296	0.82369	1				26917	10200	19319	19474	26360	26360					0.19877666709908226
KRYFIHIKKIF	11	Unmodified	_KRYFIHIKKIF_					0	0	0		ENSG00000198169|ENST00000292562|ZNF251	ENSG00000198169|ENST00000292562|ZNF251	ENSG00000198169|ENST00000292562|ZNF251	MULTI-SECPEP	A375_MHC_IP_R1	1	374.5978698730469	4	373.984233	1491.90782	0.64065	0.00023959	-0.66717	-0.00024951	-0.026522	-9.9186E-06	373.98392604343707	48.283	0.30491	48.283	48.02	48.325	0					8	5	2	0	0	0	1.0015	1	17007	17007		0.094841	0	1	1273900			26918	9236	19320	19475	26361	26361					0.1815473423266667
KRYHIAKVY	9	Unmodified	_KRYHIAKVY_					0	0	0		nc|ENSG00000170445|P12081-2|HARS1;ENSG00000170445|ENST00000504156|HARS1;ENST00000506579.5_1_5:140058520-140070889:-|nuORF	nc|ENSG00000170445|P12081-2|HARS1	nc|ENSG00000170445|P12081-2|HARS1	MULTI-MSMS	A375_MHC_IP_R1	1	393.6278991699219	3	393.232864	1176.67676	0.22391	8.805E-05	0.87186	0.00034284	1.0958	0.00043089	393.2331915765354	20.788	0.56202	20.788	20.435	20.997	0					15	10	2	0	0	0	0.17328	1	5422	5422		43.772	34.228	1	1262500			26919	7505	19321	19476	26362	26362					0.09549106250847217
KRYKSIVKY	9	Unmodified	_KRYKSIVKY_					0	0	0		nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS	nc|ENSG00000160752|P14324-2|FDPS	nc|ENSG00000160752|P14324-2|FDPS	MULTI-SECPEP	A375_MHC_IP_R2	2	395.9767150878906	3	395.576519	1183.70773	-0.39839	-0.00015759	0.15633	6.184E-05	-0.24206	-9.5752E-05	395.5765342452748	18.852	0.25997	19.455	19.423	19.683	0.60308					13	6	3	0	0	0	0.78353	1	5638	5638		9.544	3.3521	1	138700000			26920	6439	19322	19477	26363	26363					0.12322259565098648
KRYPGFMRV	9	Oxidation (M)	_KRYPGFM(Oxidation (M))RV_		KRYPGFM(1)RV		KRYPGFM(65)RV	0	0	1		nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	MULTI-MSMS	A375_MHC_IP_R1	1	390.9463195800781	3	390.546454	1168.61753	-0.10142	-3.961E-05	-1.2398	-0.0004842	-1.3412	-0.00052381	390.5465352009233	23.946	1.2662	23.946	23.483	24.749	0					92	24	7	0	0	0	0.04699	1	6545	6545		65.474	43.937	1	93044000			26921	1855	19323	19478	26364	26364		67			0.039968869650010674
KRYPGFMRV	9	Oxidation (M)	_KRYPGFM(Oxidation (M))RV_		KRYPGFM(1)RV		KRYPGFM(59)RV	0	0	1		nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	MULTI-MSMS	A375_MHC_IP_R2	2	390.2677307128906	3	390.546454	1168.61753	-0.46039	-0.0001798	0.39225	0.00015319	-0.068144	-2.6613E-05	390.54659200963437	23.474	0.96492	24.104	23.777	24.742	0.63014					32	18	2	0	0	0	0.062639	1	7583	7583		59.368	28.1	1	29732000			26922	1855	19323	19478	26365	26365		67			0.039968869650010674
KRYPGFMRV	9	Unmodified	_KRYPGFMRV_					0	0	0		nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	MULTI-MSMS	A375_MHC_IP_R1	1	385.6147155761719	3	385.214816	1152.62262	0.30009	0.0001156	-0.43074	-0.00016593	-0.13065	-5.0328E-05	385.21473211876116	33.517	0.91257	33.517	33.19	34.103	0					40	17	4	0	0	0	0.13728	1	10937	10937		43.982	30.076	1	17824000			26923	1855	19323	19479	26366	26366					0.05241190827632636
KRYPGFMRV	9	Unmodified	_KRYPGFMRV_					0	0	0		nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	MULTI-MSMS	A375_MHC_IP_R2	2	385.61474609375	3	385.214816	1152.62262	-0.16231	-6.2523E-05	-0.083773	-3.2271E-05	-0.24608	-9.4794E-05	385.21487677535555	32.451	0.60987	33.187	32.909	33.518	0.73692					34	11	4	0	0	0	0.030891	1	11534	11534		74.2	50.179	1	40255000			26924	1855	19323	19479	26367	26367					0.05241190827632636
KRYSRALYL	9	Unmodified	_KRYSRALYL_					0	0	0		nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7;ANAPC7|p.G328R|1|0.17|ENSG00000196510|chr12:110382898-110382898|C/T|missense_variant;ANAPC7|p.G328E|1|0.17|ENSG00000196510|chr12:110382897-110382897|C/T|missense_variant	nc|ENSG00000196510|Q9UJX3-2|ANAPC7	nc|ENSG00000196510|Q9UJX3-2|ANAPC7	MULTI-MSMS	A375_MHC_IP_R1	1	390.9413146972656	3	390.564502	1168.67168	-0.2939	-0.00011479	-0.15296	-5.974E-05	-0.44686	-0.00017453	390.56460824980815	29.277	0.40775	29.277	28.945	29.353	0					12	7	2	0	0	0	0.6421	1	9091	9091		12.175	0.68004	1	5368700			26925	9052	19324	19480	26368	26368					0.0940880238824775
KSACISSESSY	11	Unmodified	_KSACISSESSY_					0	0	0			REV__ENSG00000117000|ENST00000372771|RLF	REV__ENSG00000117000|ENST00000372771|RLF	MULTI-MSMS	A375_MHC_IP_R2	2	581.6591796875	2	581.258253	1160.50195	-0.18775	-0.00010913	0.15571	9.0509E-05	-0.032037	-1.8622E-05	581.2578601996244	101.08	1.7848	101.85	100.68	102.46	0.76429					44	34	2	0	0	0	0.7039	1	38316	38316		15.248	0.8431	1	3804700	+		26926	17988	19325	19481	26369	26369					-0.07187726467145694
KSADWVSDW	9	Unmodified	_KSADWVSDW_					0	0	0		nc|ENSG00000104765|O60238-2|BNIP3L;ENSG00000104765|ENST00000380629|BNIP3L	nc|ENSG00000104765|O60238-2|BNIP3L	nc|ENSG00000104765|O60238-2|BNIP3L	MSMS	A375_MHC_IP_R1	1	547.2001342773438	2	547.251089	1092.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.105	1	76.105	75.605	76.605	0								0	0	0	0.14865	1	27736	27736		23.79	2.2528	1				26927	2534	19326	19482	26370	26370					-0.054920108331543815
KSAEKEISLW	10	Unmodified	_KSAEKEISLW_					0	0	0		nc|ENSG00000243678|P22392-2|NME2;ENST00000570801.1_1_17:49245578-49248962:+|nuORF;ENSG00000243678|ENST00000512737|NME2	nc|ENSG00000243678|P22392-2|NME2	nc|ENSG00000243678|P22392-2|NME2	MULTI-SECPEP	A375_MHC_IP_R2	2	596.2243041992188	2	595.824421	1189.63429	-0.67297	-0.00040097	0.64667	0.0003853	-0.026303	-1.5672E-05	595.8254224587739	50.742	0.55529	51.496	51.209	51.765	0.75406					16	10	2	0	0	0	0.54402	1	19091	19091		35.08	0	1	2522800			26928	14916	19327	19483	26371	26371					0.04705666331960856
KSAEPYEPF	9	Unmodified	_KSAEPYEPF_					0	0	0			REV__nc|ENSG00000133131|Q8TE76-2|MORC4	REV__nc|ENSG00000133131|Q8TE76-2|MORC4	MULTI-MSMS	A375_MHC_IP_R1	1	534.654296875	2	534.25584	1066.49713	-0.68936	-0.0003683	-1.1489	-0.00061382	-1.8383	-0.00098212	534.2545155269884	60.425	1.0175	60.425	59.905	60.922	0					34	19	3	0	0	0	0.53367	1	21827	21827		18.146	3.5647	1	1747800	+		26929	18711	19328	19484	26372	26372					-0.03346242547627298
KSAFPVRF	8	Unmodified	_KSAFPVRF_					0	0	0		nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000113742|ENST00000265085|CPEB4	nc|ENSG00000113742|Q17RY0-2|CPEB4	nc|ENSG00000113742|Q17RY0-2|CPEB4	MULTI-SECPEP	A375_MHC_IP_R1	1	476.6744079589844	2	476.27417	950.533787	-0.56374	-0.00026849	0.95103	0.00045295	0.38729	0.00018445	476.2743752407899	50.471	0.4595	50.471	50.204	50.663	0					17	8	3	0	0	0	0.64461	1	17877	17877		19.362	8.538	1	2884200			26930	3180	19329	19485	26373	26373					0.056540988596111674
KSAFPVRF	8	Unmodified	_KSAFPVRF_					0	0	0		nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000113742|ENST00000265085|CPEB4	nc|ENSG00000113742|Q17RY0-2|CPEB4	nc|ENSG00000113742|Q17RY0-2|CPEB4	MULTI-SECPEP	A375_MHC_IP_R2	2	476.6737976074219	2	476.27417	950.533787	-0.82019	-0.00039064	0.83412	0.00039727	0.013923	6.6313E-06	476.2743253488488	49.515	0.50539	50.272	49.995	50.5	0.75737					16	9	2	0	0	0	0.87643	1	18585	18585		19.257	8.4331	1	3228100			26931	3180	19329	19485	26374	26374					0.056540988596111674
KSAIPHPLI	9	Unmodified	_KSAIPHPLI_					0	0	0		ENST00000559016.1_1_15:49426483-49429634:-|nuORF;ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2	ENST00000559016.1_1_15:49426483-49429634:-|nuORF	ENST00000559016.1_1_15:49426483-49429634:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	488.70294189453125	2	488.302927	974.591301	-0.17039	-8.3202E-05	-0.15084	-7.3657E-05	-0.32123	-0.00015686	488.3028302430831	45.979	0.50752	45.979	45.738	46.245	0					18	9	3	0	0	0	0.012968	1	16114	16114		92.491	52.534	1	3344700			26932	7042	19330	19486	26375	26375					0.10298941065184408
KSAIPHPLI	9	Unmodified	_KSAIPHPLI_					0	0	0		ENST00000559016.1_1_15:49426483-49429634:-|nuORF;ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2	ENST00000559016.1_1_15:49426483-49429634:-|nuORF	ENST00000559016.1_1_15:49426483-49429634:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	488.7027282714844	2	488.302927	974.591301	-0.69875	-0.0003412	0.21223	0.00010363	-0.48652	-0.00023757	488.30299496575367	44.903	0.46013	45.672	45.441	45.901	0.7691					13	8	2	0	0	0	0.064992	1	16797	16797		68.081	38.999	1	3901100			26933	7042	19330	19486	26376	26376					0.10298941065184408
KSAQLAVGIVQ	11	Unmodified	_KSAQLAVGIVQ_					0	0	0			REV__ENSG00000060749|ENST00000650167|QSER1	REV__ENSG00000060749|ENST00000650167|QSER1	MULTI-MSMS	A375_MHC_IP_R2	2	557.7346801757812	2	557.334956	1112.65536	-0.56948	-0.00031739	-0.53559	-0.0002985	-1.1051	-0.00061589	557.3341941574197	145.16	0.52094	145.19	144.94	145.46	0.021408					49	29	2	0	0	0	0.73459	1	56638	56638		4.5289	0.58447	1	478130	+		26934	16446	19331	19487	26377	26377					0.10353676431441272
KSAQLAVGIVQ	11	Unmodified	_KSAQLAVGIVQ_					0	0	0			REV__ENSG00000060749|ENST00000650167|QSER1	REV__ENSG00000060749|ENST00000650167|QSER1	MULTI-MATCH	A375_MHC_IP_R1	1		2	557.334956	1112.65536	-0.88909	-0.00049552	-0.00094021	-5.2401E-07	-0.89003	-0.00049604	557.3343090788748	145.21	0.58319	145.21	144.87	145.45	0	0.011667	0.00031124	NaN	4.5289	54	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299220	+		26935	16446	19331	19487							0.10353676431441272
KSAQLAVGIVQ	11	Unmodified	_KSAQLAVGIVQ_					0	0	0			REV__ENSG00000060749|ENST00000650167|QSER1	REV__ENSG00000060749|ENST00000650167|QSER1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	557.334956	1112.65536	-0.56948	-0.00031739	-0.53559	-0.0002985	-1.1051	-0.00061589	557.3341941574197	145.16	0.52094	145.19	144.94	145.46	0.021408	-0.011667	-0.00028472	NaN	4.5289	49	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	478130	+		26936	16446	19331	19487							0.10353676431441272
KSAVGFEY	8	Unmodified	_KSAVGFEY_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;ENST00000415461.2_1_11:70253665-70266006:+|nuORF	nc|ENSG00000085733|Q14247-2|CTTN	nc|ENSG00000085733|Q14247-2|CTTN	MULTI-MSMS	A375_MHC_IP_R1	1	451.1265563964844	2	450.726718	899.438883	0.31964	0.00014407	-0.13483	-6.077E-05	0.18482	8.3303E-05	450.7265487177976	44.665	0.71262	44.665	44.267	44.98	0					37	13	4	0	0	0	0.17784	2	15556	15556;15684		69.105	19.172	1	17378000			26937	14491	19332	19488	26378;26379	26378					-0.014858794022416077
KSAVGFEY	8	Unmodified	_KSAVGFEY_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;ENST00000415461.2_1_11:70253665-70266006:+|nuORF	nc|ENSG00000085733|Q14247-2|CTTN	nc|ENSG00000085733|Q14247-2|CTTN	MULTI-MSMS	A375_MHC_IP_R2	2	451.1662292480469	2	450.726718	899.438883	-0.089765	-4.046E-05	-0.12713	-5.7301E-05	-0.2169	-9.7761E-05	450.72655216840377	43.804	1.6173	44.573	43.469	45.086	0.7691					42	31	2	0	0	0	0.25593	2	16402	16402;16422		62.573	18.714	1	18423000			26938	14491	19332	19488	26380;26381	26380					-0.014858794022416077
KSCFKSMITA	10	Unmodified	_KSCFKSMITA_					0	0	0		nc|ENSG00000109618|Q9HD40-3|SEPSECS;ENSG00000109618|ENST00000382103|SEPSECS	nc|ENSG00000109618|Q9HD40-3|SEPSECS	nc|ENSG00000109618|Q9HD40-3|SEPSECS	MSMS	A375_MHC_IP_R2	2	558.6487426757812	2	558.28302	1114.55149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.65	1	140.69	140.19	141.19	0.04216								0	0	0	0.15435	1	55049	55049		6.7232	1.9672	1				26939	2879	19333	19489	26382	26382					-0.0012068999203620479
KSCKRREPI	9	Unmodified	_KSCKRREPI_					0	0	0		nc|ENSG00000185024|Q92994-9|BRF1;nc|ENSG00000185024|Q92994-3|BRF1;nc|ENSG00000185024|Q92994-7|BRF1;nc|ENSG00000185024|Q92994-8|BRF1;nc|ENSG00000185024|Q92994-5|BRF1;ENSG00000185024|ENST00000547530|BRF1;ENST00000547374.5_1_14:105678371-105685686:-|nuORF	nc|ENSG00000185024|Q92994-9|BRF1	nc|ENSG00000185024|Q92994-9|BRF1	MULTI-SECPEP	A375_MHC_IP_R2	2	558.6917724609375	2	558.81895	1115.62335	-0.73953	-0.00041326	-0.49952	-0.00027914	-1.239	-0.0006924	558.8186684609291	107.75	0.51054	108.51	108.2	108.71	0.75436					16	9	2	0	0	0	0.50702	1	40596	40596		13.906	0	1	1557900			26940	8632	19334	19490	26383	26383					0.07015985476664355
KSDESLEQY	9	Unmodified	_KSDESLEQY_					0	0	0		ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	MULTI-SECPEP	A375_MHC_IP_R1	1	550.150634765625	2	549.751118	1097.48768	-0.73955	-0.00040657	0.25355	0.00013939	-0.48599	-0.00026718	549.7511579085536	28.075	0.45193	28.075	27.836	28.288	0					16	8	3	0	0	0	0.14572	1	8668	8668		62.573	16.552	1	2350200			26941	3877	19335	19491	26384	26384					-0.05716055623815919
KSDESLEQY	9	Unmodified	_KSDESLEQY_					0	0	0		ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	MULTI-MATCH	A375_MHC_IP_R2	2		2	549.751118	1097.48768	-0.72047	-0.00039608	0.30395	0.0001671	-0.41652	-0.00022898	549.7512304316089	27.465	0.35532	28.144	27.996	28.351	0.67857	0.034397	3.4755E-05	NaN	62.573	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2283600			26942	3877	19335	19491							-0.05716055623815919
KSDGSFIGY	9	Unmodified	_KSDGSFIGY_					0	0	0		nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000537834.5_1_19:40745726-40771198:-|nuORF	nc|ENSG00000105221|P31751-2|AKT2	nc|ENSG00000105221|P31751-2|AKT2	MULTI-SECPEP	A375_MHC_IP_R1	1	487.6431884765625	2	487.234907	972.455261	0.19702	9.5996E-05	-0.3527	-0.00017185	-0.15568	-7.5852E-05	487.23471156879174	48.786	1.1654	48.786	48.476	49.642	0					56	22	4	0	0	0	0.16764	1	17197	17197		51.63	15.503	1	112950000			26943	2577	19336	19492	26385	26385					-0.03206798236146824
KSDGSFIGY	9	Unmodified	_KSDGSFIGY_					0	0	0		nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000537834.5_1_19:40745726-40771198:-|nuORF	nc|ENSG00000105221|P31751-2|AKT2	nc|ENSG00000105221|P31751-2|AKT2	MULTI-MSMS	A375_MHC_IP_R2	2	487.6441650390625	2	487.234907	972.455261	-0.49023	-0.00023886	0.01523	7.4204E-06	-0.475	-0.00023144	487.2348827519935	47.992	1.2648	48.754	48.429	49.694	0.76127					77	24	5	0	0	0	0.050868	1	18020	18020		63.961	15.615	1	110270000			26944	2577	19336	19492	26386	26386					-0.03206798236146824
KSDKTKWSQHL	11	Unmodified	_KSDKTKWSQHL_					0	0	0			REV__nc|ENSG00000164219|P53609-2|PGGT1B	REV__nc|ENSG00000164219|P53609-2|PGGT1B	MSMS	A375_MHC_IP_R2	2	679.1309814453125	2	679.364776	1356.715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.92	1	123.3	122.8	123.8	0.3766								0	0	0	0.15628	1	47172	47172		16.566	0.41677	1		+		26945	20466	19337	19493	26387	26387					0.05090947374856114
KSDLFFHDY	9	Unmodified	_KSDLFFHDY_					0	0	0		ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1	ENSG00000035928|ENST00000349703|RFC1	ENSG00000035928|ENST00000349703|RFC1	MULTI-MSMS	A375_MHC_IP_R1	1	391.5855712890625	3	391.185468	1170.53457	0.16545	6.4721E-05	-0.01164	-4.5534E-06	0.15381	6.0167E-05	391.1853898993572	59.572	0.81241	59.572	59.245	60.057	0					43	15	4	0	0	0	0.082375	1	21377	21377		42.312	25.747	1	18434000			26946	1134	19338	19494	26388	26388					-0.043871512820032876
KSDLFFHDY	9	Unmodified	_KSDLFFHDY_					0	0	0		ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1	ENSG00000035928|ENST00000349703|RFC1	ENSG00000035928|ENST00000349703|RFC1	MULTI-SECPEP	A375_MHC_IP_R1	1	586.6738891601562	2	586.274564	1170.53457	-0.24619	-0.00014433	-0.095938	-5.6246E-05	-0.34213	-0.00020058	586.2744698643428	59.524	1.1689	59.524	59.194	60.363	0					41	22	2	0	0	0	0.011004	1	21361	21361		143.91	93.976	1	66487000			26947	1134	19338	19494	26389	26389					-0.043871512820032876
KSDLFFHDY	9	Unmodified	_KSDLFFHDY_					0	0	0		ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1	ENSG00000035928|ENST00000349703|RFC1	ENSG00000035928|ENST00000349703|RFC1	MULTI-MSMS	A375_MHC_IP_R2	2	391.5852355957031	3	391.185468	1170.53457	-0.52502	-0.00020538	0.22186	8.6788E-05	-0.30316	-0.00011859	391.1855167325412	58.667	0.81436	59.416	59.083	59.898	0.74888					42	15	4	0	0	0	0.10622	1	22162	22162		39.213	27.038	1	24309000			26948	1134	19338	19494	26390	26390					-0.043871512820032876
KSDLFFHDY	9	Unmodified	_KSDLFFHDY_					0	0	0		ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1	ENSG00000035928|ENST00000349703|RFC1	ENSG00000035928|ENST00000349703|RFC1	MULTI-MSMS	A375_MHC_IP_R2	2	586.696533203125	2	586.274564	1170.53457	-0.8875	-0.00052032	-0.36343	-0.00021307	-1.2509	-0.00073339	586.274590022347	58.654	1.2702	59.403	58.879	60.149	0.74894					72	24	5	0	0	0	2.1057E-17	1	22221	22221		240.95	167.99	1	65531000			26949	1134	19338	19494	26391	26391					-0.043871512820032876
KSDMNRQHEY	10	Unmodified	_KSDMNRQHEY_					0	0	0			REV__nc|ENSG00000144504|Q9P2S6-4|ANKMY1	REV__nc|ENSG00000144504|Q9P2S6-4|ANKMY1	MULTI-SECPEP	A375_MHC_IP_R1	1	436.93145751953125	3	436.531421	1306.57243	-0.19334	-8.4398E-05	0.58405	0.00025495	0.39071	0.00017056	436.5315328798804	33.293	0.45767	33.293	33.09	33.547	0					21	8	3	0	0	0	0.93594	1	10900	10900		2.6312	1.039	1	3382000	+		26950	19428	19339	19495	26392	26392					-0.06859008358833307
KSDMNRQHEY	10	Unmodified	_KSDMNRQHEY_					0	0	0			REV__nc|ENSG00000144504|Q9P2S6-4|ANKMY1	REV__nc|ENSG00000144504|Q9P2S6-4|ANKMY1	MULTI-MSMS	A375_MHC_IP_R2	2	436.9315185546875	3	436.531421	1306.57243	-0.33595	-0.00014665	0.29638	0.00012938	-0.039572	-1.7274E-05	436.5314825961652	32.629	0.55897	33.366	33.061	33.62	0.73691					23	10	3	0	0	0	0.71693	1	11661	11661		4.7159	0.52642	1	3264600	+		26951	19428	19339	19495	26393	26393					-0.06859008358833307
KSDPFLVFY	9	Unmodified	_KSDPFLVFY_					0	0	0		ENST00000551855.1_1_12:39120300-39161507:-|nuORF;CPNE9|p.Q249Rfs*27|1|0.29|ENSG00000144550|chr3:9715339-9715339|C/-|frameshift_variant;nc|ENSG00000144550|Q8IYJ1-2|CPNE9;ENSG00000144550|ENST00000383832|CPNE9;ENSG00000139117|ENST00000331366|CPNE8;ENSG00000124772|ENST00000244751|CPNE5	ENST00000551855.1_1_12:39120300-39161507:-|nuORF	ENST00000551855.1_1_12:39120300-39161507:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	558.692626953125	2	558.292225	1114.5699	-0.25515	-0.00014245	-0.028074	-1.5674E-05	-0.28322	-0.00015812	558.2922292189872	108.49	1.013	108.49	108.05	109.07	0					71	19	5	0	0	0	0.26169	1	39956	39956		29.082	0.59474	1	50472000			26952	647	19340	19496	26394	26394					0.017195112458011863
KSDPFLVFY	9	Unmodified	_KSDPFLVFY_					0	0	0		ENST00000551855.1_1_12:39120300-39161507:-|nuORF;CPNE9|p.Q249Rfs*27|1|0.29|ENSG00000144550|chr3:9715339-9715339|C/-|frameshift_variant;nc|ENSG00000144550|Q8IYJ1-2|CPNE9;ENSG00000144550|ENST00000383832|CPNE9;ENSG00000139117|ENST00000331366|CPNE8;ENSG00000124772|ENST00000244751|CPNE5	ENST00000551855.1_1_12:39120300-39161507:-|nuORF	ENST00000551855.1_1_12:39120300-39161507:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	559.2188720703125	2	558.292225	1114.5699	-0.75805	-0.00042322	-0.1583	-8.8379E-05	-0.91635	-0.00051159	558.2921673003755	107.63	0.91908	108.38	107.95	108.86	0.75436					65	17	5	0	0	0	0.21241	1	40717	40717		39.95	0	1	54439000			26953	647	19340	19496	26395	26395					0.017195112458011863
KSDRHHQPHFL	11	Unmodified	_KSDRHHQPHFL_					0	0	0		ENST00000591746.1_2_18:13726821-13730717:+|nuORF;ENST00000383314.6_1_18:13726679-13730717:+|nuORF	ENST00000591746.1_2_18:13726821-13730717:+|nuORF	ENST00000591746.1_2_18:13726821-13730717:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	467.15093994140625	3	467.909331	1400.70617	-0.61468	-0.00028762	-0.76972	-0.00036016	-1.3844	-0.00064777	467.9089148384976	45.687	0.45184	46.452	46.303	46.755	0.76518					12	8	2	0	0	0	0.99732	1	17188	17188		1.0136	1.0136	1	1170300			26954	11388	19341	19497	26396	26396					0.021840185290102454
KSDRHHQPHFL	11	Unmodified	_KSDRHHQPHFL_					0	0	0		ENST00000591746.1_2_18:13726821-13730717:+|nuORF;ENST00000383314.6_1_18:13726679-13730717:+|nuORF	ENST00000591746.1_2_18:13726821-13730717:+|nuORF	ENST00000591746.1_2_18:13726821-13730717:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	467.909331	1400.70617	-0.35569	-0.00016643	-1.092	-0.00051096	-1.4477	-0.00067739	467.9088156990881	46.469	0.50414	46.469	46.245	46.749	0	0.0086032	-0.00026601	NaN	1.0136	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1648900			26955	11388	19341	19497							0.021840185290102454
KSDSGKPYYY	10	Unmodified	_KSDSGKPYYY_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;ENST00000467114.2_1_2:153535806-153549567:-|nuORF	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	A375_MHC_IP_R1	1	604.6848754882812	2	604.285128	1206.5557	-0.65116	-0.00039349	-0.0216	-1.3052E-05	-0.67276	-0.00040654	604.2851892147767	23.61	0.35546	23.61	23.483	23.838	0					9	6	2	0	0	0	0.013417	1	6532	6532		111.31	71.07	1	9337200			26956	9050	19342	19498	26397	26397					-0.039311859731242293
KSDSGKPYYY	10	Unmodified	_KSDSGKPYYY_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;ENST00000467114.2_1_2:153535806-153549567:-|nuORF	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	A375_MHC_IP_R2	2	604.68505859375	2	604.285128	1206.5557	-0.79443	-0.00048006	0.38782	0.00023435	-0.40661	-0.00024571	604.2853998600457	22.865	0.30657	23.495	23.317	23.623	0.63014					11	5	3	0	0	0	0.056415	1	7285	7285		92.201	59.415	1	4844600			26957	9050	19342	19498	26398	26398					-0.039311859731242293
KSDTNFKEF	9	Unmodified	_KSDTNFKEF_					0	0	0		ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	MULTI-MSMS	A375_MHC_IP_R1	1	558.671630859375	2	558.272021	1114.52949	-0.4346	-0.00024263	-0.83604	-0.00046674	-1.2706	-0.00070936	558.2716896429542	28.516	0.45544	28.516	28.39	28.845	0					13	8	2	0	0	0	0.11638	1	8870	8870		47.732	17.095	1	3547700			26958	6160	19343	19499	26399	26399					-0.023194551446067635
KSDTNFKEF	9	Unmodified	_KSDTNFKEF_					0	0	0		ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	MULTI-MATCH	A375_MHC_IP_R2	2		2	558.272021	1114.52949	-0.77144	-0.00043068	-0.17229	-9.6187E-05	-0.94374	-0.00052686	558.2716748614926	27.862	0.35546	28.541	28.401	28.757	0.67857	0.012372	0.00032697	NaN	47.732	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2329800			26959	6160	19343	19499							-0.023194551446067635
KSDTQNLLY	9	Unmodified	_KSDTQNLLY_					0	0	0		ENSG00000012232|ENST00000220562|EXTL3	ENSG00000012232|ENST00000220562|EXTL3	ENSG00000012232|ENST00000220562|EXTL3	MULTI-SECPEP	A375_MHC_IP_R1	1	541.6795043945312	2	541.279846	1080.54514	-0.62018	-0.00033569	0.40953	0.00022167	-0.21065	-0.00011402	541.2800405330518	43.78	0.96955	43.78	43.4	44.37	0					49	18	4	0	0	0	0.061442	1	15202	15202		72.968	14.289	1	40915000			26960	1010	19344	19500	26400	26400					0.008088313724329055
KSDTQNLLY	9	Unmodified	_KSDTQNLLY_					0	0	0		ENSG00000012232|ENST00000220562|EXTL3	ENSG00000012232|ENST00000220562|EXTL3	ENSG00000012232|ENST00000220562|EXTL3	MULTI-SECPEP	A375_MHC_IP_R2	2	541.6793212890625	2	541.279846	1080.54514	-0.75236	-0.00040724	0.49079	0.00026565	-0.26157	-0.00014158	541.280232905984	42.973	1.0143	43.745	43.065	44.079	0.7724					53	19	4	0	0	0	0.10362	1	15941	15941		72.968	14.289	1	41126000			26961	1010	19344	19500	26401	26401					0.008088313724329055
KSDVHLNFY	9	Unmodified	_KSDVHLNFY_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-SECPEP	A375_MHC_IP_R1	1	375.2575378417969	3	374.857463	1121.55056	0.27833	0.00010433	0.08236	3.0873E-05	0.36069	0.00013521	374.8574472537804	47.237	0.91825	47.237	46.901	47.819	0					58	17	5	0	0	0	0.31976	1	16552	16552		44.392	7.3173	1	75727000			26962	1519	19345	19501	26402	26402					-0.005354450451022785
KSDVHLNFY	9	Unmodified	_KSDVHLNFY_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-SECPEP	A375_MHC_IP_R1	1	562.1821899414062	2	561.782556	1121.55056	-0.51378	-0.00028863	0.22527	0.00012656	-0.2885	-0.00016208	561.7826419853101	47.237	1.0198	47.237	46.799	47.819	0					58	19	5	0	0	0	0.0047725	1	16549	16549		201.57	115.93	1	120590000			26963	1519	19345	19501	26403	26403					-0.005354450451022785
KSDVHLNFY	9	Unmodified	_KSDVHLNFY_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MSMS	A375_MHC_IP_R2	2	562.1824340820312	2	561.782556	1121.55056	-0.47543	-0.00026709	0.0014115	7.9298E-07	-0.47402	-0.00026629	561.7824980884288	46.366	1.0661	47.131	46.704	47.77	0.76518					65	20	5	0	0	0	0.0093069	1	17292	17292		173.69	91.796	1	106020000			26964	1519	19345	19501	26404	26404					-0.005354450451022785
KSDVHLNFY	9	Unmodified	_KSDVHLNFY_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-SECPEP	A375_MHC_IP_R2	2	375.2574768066406	3	374.857463	1121.55056	0.42568	0.00015957	-0.23545	-8.8262E-05	0.19022	7.1307E-05	374.8573131564971	46.368	0.86223	47.133	46.755	47.617	0.76519					56	16	5	0	0	0	0.22619	1	17291	17291		44.392	7.3173	1	70124000			26965	1519	19345	19501	26405	26405					-0.005354450451022785
KSDYKHSKGRK	11	Unmodified	_KSDYKHSKGRK_					0	0	0			REV__nc|ENSG00000107862|Q92538-3|GBF1	REV__nc|ENSG00000107862|Q92538-3|GBF1	MULTI-SECPEP	A375_MHC_IP_R1	1	445.1427307128906	3	445.249354	1332.72623	-0.066198	-2.9475E-05	-1.1477	-0.00051102	-1.2139	-0.00054049	445.24862237735204	34.733	0.20196	34.733	34.557	34.759	0					8	3	3	0	0	0	0.99548	1	11425	11425		8.7518	1.7147	1	2494500	+		26966	17501	19346	19502	26406	26406					0.07317769468977531
KSEKSCCLKN	10	Unmodified	_KSEKSCCLKN_					0	0	0			REV__SERTAD4|p.G353E|1|0.41|ENSG00000082497|chr1:210242324-210242324|G/A|missense_variant	REV__SERTAD4|p.G353E|1|0.41|ENSG00000082497|chr1:210242324-210242324|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	380.58941650390625	3	380.523098	1138.54746	0.7401	0.00028162	-0.48477	-0.00018447	0.25533	9.7158E-05	380.5230657869291	22.683	0.6588	22.683	22.164	22.823	0					30	12	3	0	0	0	0.60608	1	6122	6122		13.519	2.6197	1	5148200	+		26967	27946	19347	19503	26407	26407					-0.016267794857640183
KSELGLNFY	9	Unmodified	_KSELGLNFY_					0	0	0		ENSG00000198839|ENST00000361822|ZNF277	ENSG00000198839|ENST00000361822|ZNF277	ENSG00000198839|ENST00000361822|ZNF277	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1793823242188	2	535.779482	1069.54441	-0.82736	-0.00044328	-0.082999	-4.4469E-05	-0.91036	-0.00048775	535.7792876354488	80.322	0.81217	80.322	79.983	80.795	0					23	15	2	0	0	0	0.13208	1	29311	29311		57.722	12.022	1	8371100			26968	9344	19348	19504	26408	26408					0.0124203672337444
KSELLVEQY	9	Unmodified	_KSELLVEQY_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-SECPEP	A375_MHC_IP_R1	1	555.1970825195312	2	554.797872	1107.58119	-0.54583	-0.00030283	-0.4478	-0.00024844	-0.99363	-0.00055126	554.7977254351595	55.307	1.32	55.307	54.924	56.244	0					45	25	2	0	0	0	0.016541	1	19717	19717		107.1	48.421	1	54399000			26969	5711	19349	19505	26409	26409					0.0317028854929049
KSELLVEQY	9	Unmodified	_KSELLVEQY_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1968383789062	2	554.797872	1107.58119	-0.97865	-0.00054295	0.15786	8.7582E-05	-0.82079	-0.00045537	554.7978511521651	54.509	1.525	55.26	54.712	56.237	0.75075					79	29	4	0	0	0	0.040539	1	20511	20511		91.085	41.152	1	45739000			26970	5711	19349	19505	26410	26410					0.0317028854929049
KSETLLRDL	9	Unmodified	_KSETLLRDL_					0	0	0			REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	MULTI-MSMS	A375_MHC_IP_R1	1	359.2707214355469	3	358.876634	1073.60807	0.12555	4.5056E-05	-0.11755	-4.2188E-05	0.0079911	2.8678E-06	358.87656478610944	31.706	0.56108	31.706	31.514	32.075	0					20	10	3	0	0	0	0.53943	2	10158	10158;10196		17.863	3.0253	1	3452800	+		26971	18209	19350	19506	26411;26412	26411					0.07421397160464949
KSETLLRDL	9	Unmodified	_KSETLLRDL_					0	0	0			REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	MULTI-SECPEP	A375_MHC_IP_R1	1	538.2108154296875	2	537.811313	1073.60807	-0.64255	-0.00034557	0.27808	0.00014955	-0.36447	-0.00019602	537.8113907072159	31.692	0.50985	31.692	31.514	32.024	0					24	9	3	0	0	0	0.13244	1	10161	10161		51.415	11.466	1	10470000	+		26972	18209	19350	19506	26413	26413					0.07421397160464949
KSETLLRDL	9	Unmodified	_KSETLLRDL_					0	0	0			REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	MULTI-MSMS	A375_MHC_IP_R2	2	359.2706604003906	3	358.876634	1073.60807	-0.23516	-8.4395E-05	-0.2242	-8.0459E-05	-0.45936	-0.00016485	358.87654031054166	30.926	0.45461	31.644	31.417	31.872	0.71857					15	8	2	0	0	0	0.43945	2	10892	10892;10911		22.775	4.9118	1	4750000	+		26973	18209	19350	19506	26414;26415	26414					0.07421397160464949
KSETLLRDL	9	Unmodified	_KSETLLRDL_					0	0	0			REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	MULTI-SECPEP	A375_MHC_IP_R2	2	538.2109985351562	2	537.811313	1073.60807	-0.89827	-0.0004831	0.085033	4.5732E-05	-0.81324	-0.00043737	537.8113154620661	30.932	0.55749	31.651	31.417	31.974	0.71857					22	10	3	0	0	0	0.20059	1	10885	10885		51.415	18.63	1	11714000	+		26974	18209	19350	19506	26416	26416					0.07421397160464949
KSETLLRDL	9	Unmodified	_KSETLLRDL_					0	0	0			REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	358.876634	1073.60807	-0.23516	-8.4395E-05	-0.2242	-8.0459E-05	-0.45936	-0.00016485	358.87654031054166	30.926	0.45461	31.644	31.417	31.872	0.71857	-0.030728	-5.3123E-05	NaN	22.775	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4750000	+		26975	18209	19350	19506							0.07421397160464949
KSFADINLY	9	Unmodified	_KSFADINLY_					0	0	0		NRAS|p.Y157Lfs*19|1|0.49|ENSG00000213281|chr1:114708635-114708636|-/A|frameshift_variant;ENSG00000213281|ENST00000369535|NRAS	NRAS|p.Y157Lfs*19|1|0.49|ENSG00000213281|chr1:114708635-114708636|-/A|frameshift_variant	NRAS|p.Y157Lfs*19|1|0.49|ENSG00000213281|chr1:114708635-114708636|-/A|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1788330078125	2	535.779482	1069.54441	-0.53239	-0.00028524	0.31109	0.00016668	-0.2213	-0.00011857	535.77958001443	78.53	0.80975	78.53	78.251	79.061	0					37	15	4	0	0	0	0.061442	1	28640	28640		63.961	2.6031	1	31091000			26976	9561	19351	19507	26417	26417					0.0124203672337444
KSFADINLY	9	Unmodified	_KSFADINLY_					0	0	0		NRAS|p.Y157Lfs*19|1|0.49|ENSG00000213281|chr1:114708635-114708636|-/A|frameshift_variant;ENSG00000213281|ENST00000369535|NRAS	NRAS|p.Y157Lfs*19|1|0.49|ENSG00000213281|chr1:114708635-114708636|-/A|frameshift_variant	NRAS|p.Y157Lfs*19|1|0.49|ENSG00000213281|chr1:114708635-114708636|-/A|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	536.1788330078125	2	535.779482	1069.54441	-0.85139	-0.00045616	0.050304	2.6952E-05	-0.80109	-0.00042921	535.7794929438287	77.781	0.71323	78.524	78.216	78.929	0.74294					39	13	4	0	0	0	0.036758	1	29488	29488		99.755	10.852	1	23666000			26977	9561	19351	19507	26418	26418					0.0124203672337444
KSFADPSVF	9	Unmodified	_KSFADPSVF_					0	0	0		ZNF668|p.H393Tfs*15|1|0.31|ENSG00000167394|chr16:31061751-31061751|G/-|frameshift_variant;ENSG00000167394|ENST00000300849|ZNF668;nc|ENSG00000167394|Q96K58-2|ZNF668	ZNF668|p.H393Tfs*15|1|0.31|ENSG00000167394|chr16:31061751-31061751|G/-|frameshift_variant	ZNF668|p.H393Tfs*15|1|0.31|ENSG00000167394|chr16:31061751-31061751|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	499.6528015136719	2	499.2531	996.491647	-0.51201	-0.00025562	-0.055916	-2.7916E-05	-0.56793	-0.00028354	499.25301559715456	64.646	0.66257	65.387	65.106	65.768	0.74022					19	12	2	0	0	0	0.30925	1	24487	24487		28.495	0	1	7039600			26978	7182	19352	19508	26419	26419					-0.006739213394212129
KSFDFHFGF	9	Unmodified	_KSFDFHFGF_					0	0	0		ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119	ENSG00000109103|ENST00000335765|UNC119	ENSG00000109103|ENST00000335765|UNC119	MULTI-SECPEP	A375_MHC_IP_R1	1	565.6740112304688	2	566.266542	1130.51853	-0.48676	-0.00027563	0.55189	0.00031252	0.065136	3.6885E-05	566.2670155493875	94.347	0.8625	94.347	93.991	94.853	0					40	16	4	0	0	0	0.016541	1	34637	34637		75.761	56.504	1	12542000			26979	2855	19353	19509	26420	26420					-0.04150812728244091
KSFDFHFGF	9	Unmodified	_KSFDFHFGF_					0	0	0		ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119	ENSG00000109103|ENST00000335765|UNC119	ENSG00000109103|ENST00000335765|UNC119	MULTI-MSMS	A375_MHC_IP_R2	2	566.66650390625	2	566.266542	1130.51853	-0.2792	-0.0001581	0.82352	0.00046633	0.54432	0.00030823	566.2672763659424	93.578	1.2164	94.323	93.602	94.818	0.74474					44	23	4	0	0	0	0.0098085	1	35527	35527		114.2	76.228	1	11307000			26980	2855	19353	19509	26421	26421					-0.04150812728244091
KSFDNIRNW	9	Unmodified	_KSFDNIRNW_					0	0	0		ENST00000589697.1_1_19:16222732-16236504:+|nuORF;ENST00000587156.5_1_19:16222711-16238468:+|nuORF;nc|ENSG00000167461|P61006-2|RAB8A;ENSG00000167461|ENST00000300935|RAB8A	ENST00000589697.1_1_19:16222732-16236504:+|nuORF	ENST00000589697.1_1_19:16222732-16236504:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	394.2685546875	3	393.868362	1178.58326	0.21997	8.6639E-05	-0.075552	-2.9758E-05	0.14442	5.6881E-05	393.8683274414655	44.287	0.66551	44.287	43.909	44.575	0					30	12	3	0	0	0	0.056023	1	15406	15406		78.06	56.47	1	9643700			26981	7184	19354	19510	26422	26422					0.0011076207774749491
KSFDNIRNW	9	Unmodified	_KSFDNIRNW_					0	0	0		ENST00000589697.1_1_19:16222732-16236504:+|nuORF;ENST00000587156.5_1_19:16222711-16238468:+|nuORF;nc|ENSG00000167461|P61006-2|RAB8A;ENSG00000167461|ENST00000300935|RAB8A	ENST00000589697.1_1_19:16222732-16236504:+|nuORF	ENST00000589697.1_1_19:16222732-16236504:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	590.6986694335938	2	590.298904	1178.58326	-0.13983	-8.2543E-05	-0.11458	-6.7635E-05	-0.25441	-0.00015018	590.2987640359228	44.257	0.6158	44.257	43.959	44.575	0					27	11	3	0	0	0	0.010878	1	15401	15401		154.75	120.35	1	13988000			26982	7184	19354	19510	26423	26423					0.0011076207774749491
KSFDNIRNW	9	Unmodified	_KSFDNIRNW_					0	0	0		ENST00000589697.1_1_19:16222732-16236504:+|nuORF;ENST00000587156.5_1_19:16222711-16238468:+|nuORF;nc|ENSG00000167461|P61006-2|RAB8A;ENSG00000167461|ENST00000300935|RAB8A	ENST00000589697.1_1_19:16222732-16236504:+|nuORF	ENST00000589697.1_1_19:16222732-16236504:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	394.268310546875	3	393.868362	1178.58326	-0.018107	-7.1319E-06	0.0062733	2.4708E-06	-0.011834	-4.6611E-06	393.86836427621523	43.44	0.5569	44.212	43.926	44.483	0.7724					29	10	4	0	0	0	0.05217	1	16161	16161		73.196	50.538	1	10597000			26983	7184	19354	19510	26424	26424					0.0011076207774749491
KSFDNIRNW	9	Unmodified	_KSFDNIRNW_					0	0	0		ENST00000589697.1_1_19:16222732-16236504:+|nuORF;ENST00000587156.5_1_19:16222711-16238468:+|nuORF;nc|ENSG00000167461|P61006-2|RAB8A;ENSG00000167461|ENST00000300935|RAB8A	ENST00000589697.1_1_19:16222732-16236504:+|nuORF	ENST00000589697.1_1_19:16222732-16236504:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	590.6985473632812	2	590.298904	1178.58326	-0.41567	-0.00024537	0.15823	9.3404E-05	-0.25744	-0.00015196	590.2989310116106	43.416	0.5569	44.188	43.926	44.483	0.7724					22	10	3	0	0	0	0.049608	1	16152	16152		84.522	64.896	1	13240000			26984	7184	19354	19510	26425	26425					0.0011076207774749491
KSFDSPSSF	9	Unmodified	_KSFDSPSSF_					0	0	0		ZNF441|p.R519Q|1|0.43|ENSG00000197044|chr19:11781380-11781380|G/A|missense_variant;nc|ENSG00000197044|Q8N8Z8-2|ZNF441;ENSG00000197044|ENST00000357901|ZNF441	ZNF441|p.R519Q|1|0.43|ENSG00000197044|chr19:11781380-11781380|G/A|missense_variant	ZNF441|p.R519Q|1|0.43|ENSG00000197044|chr19:11781380-11781380|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	501.6321105957031	2	501.232364	1000.45018	-0.70979	-0.00035577	-0.16023	-8.0314E-05	-0.87002	-0.00043608	501.23213055101945	41.596	1.2696	41.596	40.762	42.032	0					51	24	4	0	0	0	0.025037	1	14394	14394		100.09	41.412	1	30780000			26985	9109	19355	19511	26426	26426					-0.05003102098748968
KSFDSPSSF	9	Unmodified	_KSFDSPSSF_					0	0	0		ZNF441|p.R519Q|1|0.43|ENSG00000197044|chr19:11781380-11781380|G/A|missense_variant;nc|ENSG00000197044|Q8N8Z8-2|ZNF441;ENSG00000197044|ENST00000357901|ZNF441	ZNF441|p.R519Q|1|0.43|ENSG00000197044|chr19:11781380-11781380|G/A|missense_variant	ZNF441|p.R519Q|1|0.43|ENSG00000197044|chr19:11781380-11781380|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	501.6319885253906	2	501.232364	1000.45018	-0.78473	-0.00039333	-0.56416	-0.00028278	-1.3489	-0.00067611	501.2320988577426	40.787	1.2195	41.561	40.777	41.997	0.77451					58	23	4	0	0	0	0.014789	1	15178	15178		90.135	42.386	1	30030000			26986	9109	19355	19511	26427	26427					-0.05003102098748968
KSFEAPIKL	9	Unmodified	_KSFEAPIKL_					0	0	0		nc|ENSG00000101294|Q8TCT9-5|HM13;nc|ENSG00000101294|Q8TCT9|HM13;ENST00000492709.5_1_20:30132820-30157019:+|nuORF;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;ENST00000483310.5_1_20:30136863-30150236:+|nuORF;ENST00000472128.5_1_20:30136905-30155443:+|nuORF	nc|ENSG00000101294|Q8TCT9-5|HM13	nc|ENSG00000101294|Q8TCT9-5|HM13	MULTI-SECPEP	A375_MHC_IP_R1	1	517.2079467773438	2	516.808042	1031.60153	-0.4439	-0.00022941	-0.56843	-0.00029377	-1.0123	-0.00052318	516.8082495651305	54.55	0.45708	54.55	54.263	54.72	0					23	8	4	0	0	0	0.15736	1	19486	19486		42.835	16.567	1	5688700			26987	14514	19356	19512	26428	26428					0.08699503999741864
KSFEAPIKL	9	Unmodified	_KSFEAPIKL_					0	0	0		nc|ENSG00000101294|Q8TCT9-5|HM13;nc|ENSG00000101294|Q8TCT9|HM13;ENST00000492709.5_1_20:30132820-30157019:+|nuORF;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;ENST00000483310.5_1_20:30136863-30150236:+|nuORF;ENST00000472128.5_1_20:30136905-30155443:+|nuORF	nc|ENSG00000101294|Q8TCT9-5|HM13	nc|ENSG00000101294|Q8TCT9-5|HM13	MULTI-SECPEP	A375_MHC_IP_R2	2	517.2076416015625	2	516.808042	1031.60153	-1.2676	-0.00065513	-0.18868	-9.7512E-05	-1.4563	-0.00075264	516.8082958179797	53.583	0.5624	54.334	53.995	54.557	0.75105					24	10	3	0	0	0	0.077986	1	20247	20247		57.108	13.335	1	5339100			26988	14514	19356	19512	26429	26429					0.08699503999741864
KSFEAPIKW	9	Unmodified	_KSFEAPIKW_					0	0	0		ENST00000460389.5_1_20:30136650-30157019:+|nuORF	ENST00000460389.5_1_20:30136650-30157019:+|nuORF	ENST00000460389.5_1_20:30136650-30157019:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	369.60638427734375	3	369.206203	1104.59678	0.29301	0.00010818	0.17088	6.309E-05	0.4639	0.00017127	369.20614440733516	59.416	0.55864	59.416	59.143	59.701	0					22	10	3	0	0	0	0.64971	1	21345	21345		7.9454	2.6485	1	5713800			26989	12167	19357	19513	26430	26430					0.04866619856966281
KSFEAPIKW	9	Unmodified	_KSFEAPIKW_					0	0	0		ENST00000460389.5_1_20:30136650-30157019:+|nuORF	ENST00000460389.5_1_20:30136650-30157019:+|nuORF	ENST00000460389.5_1_20:30136650-30157019:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	553.7061767578125	2	553.305667	1104.59678	-0.54942	-0.000304	0.1057	5.8487E-05	-0.44371	-0.00024551	553.3056530478195	59.37	0.71078	59.37	59.092	59.803	0					36	13	4	0	0	0	0.064803	1	21340	21340		77.049	57.792	1	12214000			26990	12167	19357	19513	26431	26431					0.04866619856966281
KSFEAPIKW	9	Unmodified	_KSFEAPIKW_					0	0	0		ENST00000460389.5_1_20:30136650-30157019:+|nuORF	ENST00000460389.5_1_20:30136650-30157019:+|nuORF	ENST00000460389.5_1_20:30136650-30157019:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	369.60614013671875	3	369.206203	1104.59678	-0.049569	-1.8301E-05	-0.085011	-3.1386E-05	-0.13458	-4.9688E-05	369.20612689621925	58.466	0.5109	59.215	58.929	59.44	0.74894					25	9	4	0	0	0	0.31062	1	22112	22112		22.775	11.975	1	7407200			26991	12167	19357	19513	26432	26432					0.04866619856966281
KSFEAPIKW	9	Unmodified	_KSFEAPIKW_					0	0	0		ENST00000460389.5_1_20:30136650-30157019:+|nuORF	ENST00000460389.5_1_20:30136650-30157019:+|nuORF	ENST00000460389.5_1_20:30136650-30157019:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	553.7050170898438	2	553.305667	1104.59678	-1.1007	-0.000609	0.090674	5.0171E-05	-1.01	-0.00055883	553.3056010322081	58.518	0.81474	59.267	58.929	59.744	0.74894					38	15	4	0	0	0	0.038565	1	22103	22103		85.764	64.227	1	9261800			26992	12167	19357	19513	26433	26433					0.04866619856966281
KSFEDIHHY	9	Unmodified	_KSFEDIHHY_					0	0	0		ENSG00000133703|ENST00000311936|KRAS;nc|ENSG00000133703|P01116|KRAS	ENSG00000133703|ENST00000311936|KRAS	ENSG00000133703|ENST00000311936|KRAS	MULTI-MSMS	A375_MHC_IP_R1	1	588.6774291992188	2	588.277638	1174.54072	-0.5958	-0.0003505	0.14808	8.7114E-05	-0.44772	-0.00026338	588.2777255311973	23.61	0.25504	23.61	23.432	23.687	0					9	4	3	0	0	0	0.0028938	1	6524	6524		157.8	113.94	1	20810000			26993	4523	19358	19514	26434	26434					-0.03956633050461278
KSFEDIHHY	9	Unmodified	_KSFEDIHHY_					0	0	0		ENSG00000133703|ENST00000311936|KRAS;nc|ENSG00000133703|P01116|KRAS	ENSG00000133703|ENST00000311936|KRAS	ENSG00000133703|ENST00000311936|KRAS	MULTI-SECPEP	A375_MHC_IP_R1	1	392.9209289550781	3	392.520851	1174.54072	-0.19877	-7.8021E-05	0.14585	5.7248E-05	-0.052921	-2.0773E-05	392.520894511186	23.61	0.35596	23.61	23.432	23.787	0					18	6	4	0	0	0	0.010878	1	6505	6505		121.5	83.328	1	172240000			26994	4523	19358	19514	26435	26435					-0.03956633050461278
KSFEDIHHY	9	Unmodified	_KSFEDIHHY_					0	0	0		ENSG00000133703|ENST00000311936|KRAS;nc|ENSG00000133703|P01116|KRAS	ENSG00000133703|ENST00000311936|KRAS	ENSG00000133703|ENST00000311936|KRAS	MULTI-MSMS	A375_MHC_IP_R2	2	588.67724609375	2	588.277638	1174.54072	-0.90444	-0.00053206	-0.070147	-4.1266E-05	-0.97459	-0.00057333	588.277505160962	21.538	0.35667	22.158	21.928	22.285	0.61932					10	6	2	0	0	0	0.0099737	1	6794	6794		96.367	77.005	1	2965100			26995	4523	19358	19514	26436	26436					-0.03956633050461278
KSFEDIHHY	9	Unmodified	_KSFEDIHHY_					0	0	0		ENSG00000133703|ENST00000311936|KRAS;nc|ENSG00000133703|P01116|KRAS	ENSG00000133703|ENST00000311936|KRAS	ENSG00000133703|ENST00000311936|KRAS	MULTI-SECPEP	A375_MHC_IP_R2	2	392.9206237792969	3	392.520851	1174.54072	-0.53638	-0.00021054	-1.3284	-0.00052143	-1.8648	-0.00073197	392.52018215951705	22.706	0.96898	23.336	22.603	23.572	0.63014					63	18	4	0	0	0	0.16237	1	7270	7270		55.235	43.717	1	25345000			26996	4523	19358	19514	26437	26437					-0.03956633050461278
KSFEDIHHY	9	Unmodified	_KSFEDIHHY_					0	0	0		ENSG00000133703|ENST00000311936|KRAS;nc|ENSG00000133703|P01116|KRAS	ENSG00000133703|ENST00000311936|KRAS	ENSG00000133703|ENST00000311936|KRAS	MULTI-SECPEP	A375_MHC_IP_R2	2	392.92083740234375	3	392.520851	1174.54072	-0.52765	-0.00020712	0.36378	0.00014279	-0.16387	-6.4324E-05	392.5209554506759	21.487	0.66235	22.106	21.878	22.541	0.61932					21	12	2	0	0	0	0.010905	1	6751	6751		128.57	103.58	1	42362000			26997	4523	19358	19514	26438	26438					-0.03956633050461278
KSFEDIHHY	9	Unmodified	_KSFEDIHHY_					0	0	0		ENSG00000133703|ENST00000311936|KRAS;nc|ENSG00000133703|P01116|KRAS	ENSG00000133703|ENST00000311936|KRAS	ENSG00000133703|ENST00000311936|KRAS	MULTI-MATCH	A375_MHC_IP_R2	2		2	588.277638	1174.54072	-0.91481	-0.00053816	-0.18813	-0.00011067	-1.1029	-0.00064883	588.2772317766751	22.672	0.40777	23.303	23.062	23.47	0.63014	-0.15367	-0.00027942	NaN	157.8	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1981200			26998	4523	19358	19514							-0.03956633050461278
KSFEDIHQY	9	Unmodified	_KSFEDIHQY_					0	0	0		nc|ENSG00000174775|P01112-2|HRAS;ENSG00000174775|ENST00000311189|HRAS	nc|ENSG00000174775|P01112-2|HRAS	nc|ENSG00000174775|P01112-2|HRAS	MULTI-MSMS	A375_MHC_IP_R1	1	584.1773071289062	2	583.77747	1165.54039	-0.20025	-0.0001169	0.43658	0.00025486	0.23633	0.00013796	583.7776498438265	31.52	0.65988	31.52	31.109	31.769	0					25	9	4	0	0	0	1.6535E-17	1	10087	10087		243.33	195.58	1	20947000			26999	7899	19359	19515	26439	26439					-0.03576052770313254
KSFEDIHQY	9	Unmodified	_KSFEDIHQY_					0	0	0		nc|ENSG00000174775|P01112-2|HRAS;ENSG00000174775|ENST00000311189|HRAS	nc|ENSG00000174775|P01112-2|HRAS	nc|ENSG00000174775|P01112-2|HRAS	MULTI-MSMS	A375_MHC_IP_R1	1	389.9207458496094	3	389.520739	1165.54039	0.2183	8.5032E-05	0.16079	6.2633E-05	0.37909	0.00014766	389.5208437980464	31.534	0.55824	31.534	31.211	31.769	0					25	10	4	0	0	0	0.0092511	1	10096	10096		85.764	57.27	1	8465000			27000	7899	19359	19515	26440	26440					-0.03576052770313254
KSFEDIHQY	9	Unmodified	_KSFEDIHQY_					0	0	0		nc|ENSG00000174775|P01112-2|HRAS;ENSG00000174775|ENST00000311189|HRAS	nc|ENSG00000174775|P01112-2|HRAS	nc|ENSG00000174775|P01112-2|HRAS	MULTI-MSMS	A375_MHC_IP_R2	2	584.1775512695312	2	583.77747	1165.54039	-0.46468	-0.00027127	0.32692	0.00019085	-0.13776	-8.0421E-05	583.7775960298145	30.822	0.75766	31.54	31.114	31.872	0.71857					29	9	4	0	0	0	1.3368E-06	1	10863	10863		214.05	166.3	1	20066000			27001	7899	19359	19515	26441	26441					-0.03576052770313254
KSFEDIHQY	9	Unmodified	_KSFEDIHQY_					0	0	0		nc|ENSG00000174775|P01112-2|HRAS;ENSG00000174775|ENST00000311189|HRAS	nc|ENSG00000174775|P01112-2|HRAS	nc|ENSG00000174775|P01112-2|HRAS	MULTI-SECPEP	A375_MHC_IP_R2	2	389.9207458496094	3	389.520739	1165.54039	-0.18887	-7.3569E-05	0.24483	9.5368E-05	0.055964	2.1799E-05	389.5208513770148	30.825	0.80774	31.544	31.013	31.821	0.71857					31	15	4	0	0	0	0.04038	1	10849	10849		69.338	57.82	1	11347000			27002	7899	19359	19515	26442	26442					-0.03576052770313254
KSFEKAKESW	10	Unmodified	_KSFEKAKESW_					0	0	0		ENSG00000096060|ENST00000357266|FKBP5;ENST00000597277.1_9:43426178-43426727:-|nuORF;ENSG00000004478|ENST00000001008|FKBP4	ENSG00000096060|ENST00000357266|FKBP5	ENSG00000096060|ENST00000357266|FKBP5	MULTI-SECPEP	A375_MHC_IP_R1	1	414.2836608886719	3	413.883789	1238.62954	0.24547	0.0001016	-0.28217	-0.00011679	-0.036699	-1.5189E-05	413.88365703899615	19.778	0.40828	19.778	19.571	19.98	0					17	7	3	0	0	0	0.55923	1	4994	4994		40.714	11.433	1	3297400			27003	2052	19360	19516	26443	26443					0.019767821891718995
KSFENIQNW	9	Unmodified	_KSFENIQNW_					0	0	0		ENST00000462680.5_1_1:153955646-153957199:-|nuORF;ENSG00000143545|ENST00000368575|RAB13	ENST00000462680.5_1_1:153955646-153957199:-|nuORF	ENST00000462680.5_1_1:153955646-153957199:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	584.1876831054688	2	583.285463	1164.55637	-0.2461	-0.00014355	0.044032	2.5683E-05	-0.20207	-0.00011787	583.2854616054883	60.515	1.1195	60.515	60.159	61.279	0					63	21	4	0	0	0	0.0099737	1	21728	21728		96.367	7.4127	1	126430000			27004	5406	19361	19517	26444	26444					-0.01932346533430973
KSFENIQNW	9	Unmodified	_KSFENIQNW_					0	0	0		ENST00000462680.5_1_1:153955646-153957199:-|nuORF;ENSG00000143545|ENST00000368575|RAB13	ENST00000462680.5_1_1:153955646-153957199:-|nuORF	ENST00000462680.5_1_1:153955646-153957199:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	583.6848754882812	2	583.285463	1164.55637	-0.78079	-0.00045542	0.22711	0.00013247	-0.55368	-0.00032295	583.2855751513506	59.778	1.5215	60.526	60.047	61.569	0.74714					71	29	4	0	0	0	0.0014143	1	22566	22566		149.91	18.646	1	134390000			27005	5406	19361	19517	26445	26445					-0.01932346533430973
KSFENISKW	9	Unmodified	_KSFENISKW_					0	0	0		ENST00000462003.5_1_2:26332694-26350111:+|nuORF;ENSG00000084733|ENST00000264710|RAB10	ENST00000462003.5_1_2:26332694-26350111:+|nuORF	ENST00000462003.5_1_2:26332694-26350111:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	380.6014709472656	3	380.201229	1137.58186	0.5129	0.00019501	-0.20281	-7.711E-05	0.31009	0.0001179	380.20111741507264	42.617	0.60653	42.617	42.386	42.993	0					30	11	3	0	0	0	0.10362	1	14761	14761		51.488	33.625	1	15328000			27006	1803	19362	19518	26446	26446					0.018571279890011283
KSFENISKW	9	Unmodified	_KSFENISKW_					0	0	0		ENST00000462003.5_1_2:26332694-26350111:+|nuORF;ENSG00000084733|ENST00000264710|RAB10	ENST00000462003.5_1_2:26332694-26350111:+|nuORF	ENST00000462003.5_1_2:26332694-26350111:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	570.1985473632812	2	569.798206	1137.58186	-0.13406	-7.6387E-05	-0.16391	-9.3396E-05	-0.29797	-0.00016978	569.7981086733546	42.612	0.91411	42.612	42.386	43.3	0					43	17	4	0	0	0	0.030244	1	14755	14755		96.936	51.196	1	27541000			27007	1803	19362	19518	26447	26447					0.018571279890011283
KSFENISKW	9	Unmodified	_KSFENISKW_					0	0	0		ENST00000462003.5_1_2:26332694-26350111:+|nuORF;ENSG00000084733|ENST00000264710|RAB10	ENST00000462003.5_1_2:26332694-26350111:+|nuORF	ENST00000462003.5_1_2:26332694-26350111:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	380.6011047363281	3	380.201229	1137.58186	0.01128	4.2887E-06	-0.16412	-6.2399E-05	-0.15284	-5.8111E-05	380.20118015689064	41.784	0.7159	42.558	42.3	43.016	0.77451					37	13	4	0	0	0	0.011308	1	15508	15508		98.73	64.909	1	16359000			27008	1803	19362	19518	26448	26448					0.018571279890011283
KSFENISKW	9	Unmodified	_KSFENISKW_					0	0	0		ENST00000462003.5_1_2:26332694-26350111:+|nuORF;ENSG00000084733|ENST00000264710|RAB10	ENST00000462003.5_1_2:26332694-26350111:+|nuORF	ENST00000462003.5_1_2:26332694-26350111:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	570.1981811523438	2	569.798206	1137.58186	-0.33241	-0.00018941	-0.24626	-0.00014032	-0.57867	-0.00032973	569.7979951664221	41.808	0.51108	42.582	42.3	42.811	0.77451					28	9	4	0	0	0	0.011204	1	15497	15497		114.5	81.052	1	28113000			27009	1803	19362	19518	26449	26449					0.018571279890011283
KSFGSAQEF	9	Unmodified	_KSFGSAQEF_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	A375_MHC_IP_R1	1	501.21063232421875	2	500.740357	999.46616	-0.20283	-0.00010156	-0.34028	-0.00017039	-0.54311	-0.00027196	500.7401851442094	35.804	0.81647	35.804	35.522	36.339	0					52	15	5	0	0	0	0.012447	2	11990	11897;11990		93.166	38.392	1	195460000			27010	8584	19363	19519	26450;26451	26451					-0.03359395861855319
KSFGSAQEF	9	Unmodified	_KSFGSAQEF_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	A375_MHC_IP_R2	2	501.2106628417969	2	500.740357	999.46616	-0.80772	-0.00040446	0.20512	0.00010271	-0.60259	-0.00030174	500.7404415838407	35.041	0.75747	35.804	35.475	36.233	0.76338					53	14	5	0	0	0	0.0094735	2	12666	12627;12666		107.1	57.167	1	164990000			27011	8584	19363	19519	26452;26453	26453					-0.03359395861855319
KSFGSPQNIHI	11	Unmodified	_KSFGSPQNIHI_					0	0	0		ENST00000595607.5_1_19:48789941-48790016:+|nuORF	ENST00000595607.5_1_19:48789941-48790016:+|nuORF	ENST00000595607.5_1_19:48789941-48790016:+|nuORF	MSMS	A375_MHC_IP_R1	1	409.925537109375	3	409.887533	1226.64077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.404	1	31.404	30.904	31.904	0								0	0	0	0.15837	1	10054	10054		8.7518	0	1				27012	13836	19364	19520	26454	26454					0.036516042833454776
KSFKKVNL	8	Unmodified	_KSFKKVNL_					0	0	0			REV__tr|U7T2L1|U7T2L1_FUSNUChromosomalreplicationinitiatorDnaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00745PE=4SV=1	REV__tr|U7T2L1|U7T2L1_FUSNUChromosomalreplicationinitiatorDnaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00745PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	482.7026062011719	2	482.302927	962.591301	-0.38593	-0.00018613	0.013561	6.5403E-06	-0.37237	-0.00017959	482.30295394673783	59.085	0.45835	59.085	58.938	59.397	0					10	8	2	0	0	0	0.93661	1	21276	21276		15.847	0	1	1350600	+		27013	28749	19365	19521	26455	26455					0.10850941065177722
KSFKLSGF	8	Unmodified	_KSFKLSGF_					0	0	0		ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	MULTI-SECPEP	A375_MHC_IP_R1	1	457.6603088378906	2	457.260728	912.506903	-0.094678	-4.3293E-05	-0.60657	-0.00027736	-0.70125	-0.00032065	457.2605088354132	44.199	1.022	44.199	43.553	44.575	0					33	19	3	0	0	0	0.79439	1	15425	15425		18.373	0	1	3672800			27014	10029	19366	19522	26456	26456					0.04714990248419326
KSFLGVKEL	9	Unmodified	_KSFLGVKEL_					0	0	0		nc|ENSG00000127511|O75182|SIN3B;ENSG00000127511|ENST00000248054|SIN3B	nc|ENSG00000127511|O75182|SIN3B	nc|ENSG00000127511|O75182|SIN3B	MULTI-SECPEP	A375_MHC_IP_R1	1	511.2079772949219	2	510.808042	1019.60153	-0.42645	-0.00021783	0.055393	2.8295E-05	-0.37106	-0.00018954	510.80801889414755	52.231	0.45607	52.231	52.034	52.49	0					20	8	3	0	0	0	0.42978	1	18563	18563		42.835	4.6596	1	5059500			27015	4094	19367	19523	26457	26457					0.09251503999769284
KSFLGVKEL	9	Unmodified	_KSFLGVKEL_					0	0	0		nc|ENSG00000127511|O75182|SIN3B;ENSG00000127511|ENST00000248054|SIN3B	nc|ENSG00000127511|O75182|SIN3B	nc|ENSG00000127511|O75182|SIN3B	MULTI-SECPEP	A375_MHC_IP_R2	2	510.67919921875	2	510.808042	1019.60153	-0.91924	-0.00046956	-0.0010324	-5.2737E-07	-0.92028	-0.00047008	510.8079956908599	51.329	0.50766	52.081	51.813	52.321	0.75225					20	9	3	0	0	0	0.064556	1	19324	19324		85.764	17.684	1	4869700			27016	4094	19367	19523	26458	26458					0.09251503999769284
KSFLVARI	8	Unmodified	_KSFLVARI_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	MULTI-SECPEP	A375_MHC_IP_R1	1	467.6609191894531	2	467.297645	932.580737	-0.17579	-8.2147E-05	-0.09019	-4.2145E-05	-0.26598	-0.00012429	467.2976190266364	51.296	0.35585	51.296	51.068	51.424	0					10	6	2	0	0	0	0.60242	1	18190	18190		30.637	2.1497	1	1846000			27017	1631	19368	19524	26459	26459					0.11174958410742875
KSFLVARI	8	Unmodified	_KSFLVARI_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	MULTI-SECPEP	A375_MHC_IP_R2	2	467.6974182128906	2	467.297645	932.580737	-0.82906	-0.00038742	-3.3822	-0.0015805	-4.2113	-0.0019679	467.2976867179312	50.162	0.40582	50.917	50.702	51.108	0.75406					18	7	4	0	0	0	0.81376	1	18906	18906		19.257	2.3147	1	2750100			27018	1631	19368	19524	26460	26460					0.11174958410742875
KSFMDFGSW	9	Unmodified	_KSFMDFGSW_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11;TFIP11|p.K433*|1|0.38|ENSG00000100109|chr22:26499136-26499137|-/A|frameshift_variant	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	A375_MHC_IP_R2	2	553.2235107421875	2	552.744585	1103.47462	-0.71057	-0.00039276	1.0286	0.00056853	0.31799	0.00017577	552.7447644226108	108.94	0.41039	109.69	109.52	109.93	0.74684					10	7	2	0	0	0	0.31062	1	41133	41133		29.841	6.6922	1	865680			27019	2121	19369	19525	26461	26461					-0.07298165216889174
KSFNFAKKF	9	Unmodified	_KSFNFAKKF_					0	0	0		ENST00000486403.1_1_2:114398907-114399703:+|nuORF;ENST00000494909.5_1_2:114398907-114399703:+|nuORF;ENST00000465063.5_1_22:51207206-51208050:-|nuORF;ENST00000450954.5_1_2:114386257-114399703:+|nuORF;ENST00000436958.5_1_22:51207206-51220648:-|nuORF;nc|ENSG00000144134|Q9UNT1|RABL2B;nc|ENSG00000144134|Q9UBK7|RABL2A;ENSG00000144134|ENST00000683472|RABL2A;ENSG00000079974|ENST00000691320|RABL2B;nc|ENSG00000144134|Q9UNT1-3|RABL2B;nc|ENSG00000144134|Q9UBK7-3|RABL2A	ENST00000486403.1_1_2:114398907-114399703:+|nuORF	ENST00000486403.1_1_2:114398907-114399703:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	373.2783508300781	3	372.878198	1115.61277	0.36554	0.0001363	0.077697	2.8971E-05	0.44323	0.00016527	372.8782092958245	31.489	0.50721	31.489	31.262	31.769	0					20	9	3	0	0	0	0.064994	1	10071	10071		78.61	49.529	1	10015000			27020	1705	19370	19526	26462	26462					0.05958326093877986
KSFNLPML	8	Unmodified	_KSFNLPML_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	A375_MHC_IP_R1	1	475.66217041015625	2	475.262413	948.510274	-0.38956	-0.00018514	0.30426	0.0001446	-0.085298	-4.0539E-05	475.26248569481294	93.353	0.71358	93.353	92.973	93.686	0					28	13	3	0	0	0	0.19889	1	34288	34288		67.344	5.9864	1	2120600			27021	3399	19371	19527	26463	26463					0.033959170307753084
KSFNLPML	8	Unmodified	_KSFNLPML_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	A375_MHC_IP_R2	2	475.66180419921875	2	475.262413	948.510274	-0.46034	-0.00021878	-0.40428	-0.00019214	-0.86462	-0.00041092	475.26221499736187	92.509	0.65935	93.248	92.836	93.495	0.73901					23	12	2	0	0	0	0.2241	1	35138	35138		65.235	3.8776	1	3258200			27022	3399	19371	19527	26464	26464					0.033959170307753084
KSFNLPML	8	Oxidation (M)	_KSFNLPM(Oxidation (M))L_		KSFNLPM(1)L		KSFNLPM(52)L	0	0	1		ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-SECPEP	A375_MHC_IP_R1	1	483.6595153808594	2	483.259871	964.505189	-0.15602	-7.5399E-05	-0.52557	-0.00025399	-0.6816	-0.00032939	483.2596092519142	78.53	0.96433	78.53	78.301	79.265	0					34	18	2	0	0	0	0.36486	1	28635	28635		52.268	8.4101	1	4535800			27023	3399	19371	19528	26465	26465		170			0.021516131681664774
KSFNLPML	8	Oxidation (M)	_KSFNLPM(Oxidation (M))L_		KSFNLPM(1)L		KSFNLPM(48)L	0	0	1		ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	A375_MHC_IP_R2	2	483.6595764160156	2	483.259871	964.505189	-0.58129	-0.00028091	-0.36155	-0.00017472	-0.94283	-0.00045563	483.25963801454645	77.906	1.1225	78.649	78.01	79.132	0.74293					39	21	2	0	0	0	0.53027	1	29664	29664		47.749	9.5975	1	3327500			27024	3399	19371	19528	26466	26466		170			0.021516131681664774
KSFNRHLHF	9	Unmodified	_KSFNRHLHF_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENST00000530336.2_1_14:51390668-51411121:-|nuORF;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R1	1	396.2806396484375	3	395.880713	1184.62031	-0.35459	-0.00014037	0.033151	1.3124E-05	-0.32144	-0.00012725	395.8807036218773	23.61	0.55937	23.61	23.432	23.991	0					34	10	4	0	0	0	0.10518	2	6518	6518;6578		49.742	23.474	1	56622000			27025	2241;2187	19372	19529	26467;26468	26467					0.03538478414156998
KSFNRHLHF	9	Unmodified	_KSFNRHLHF_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENST00000530336.2_1_14:51390668-51411121:-|nuORF;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R2	2	396.2804260253906	3	395.880713	1184.62031	-0.47553	-0.00018825	0.07234	2.8638E-05	-0.40319	-0.00015961	395.88073218324433	22.614	0.71488	23.244	22.755	23.47	0.63014					27	13	3	0	0	0	0.10637	1	7166	7166		49.527	49.527	1	5453200			27026	2241;2187	19372	19529	26469	26469					0.03538478414156998
KSFNRHLHF	9	Unmodified	_KSFNRHLHF_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENST00000530336.2_1_14:51390668-51411121:-|nuORF;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	A375_MHC_IP_R2	2	395.25921630859375	3	395.880713	1184.62031	-0.45804	-0.00018133	0.21622	8.5598E-05	-0.24182	-9.573E-05	395.8808308236226	20.705	1.0128	21.316	20.907	21.919	0.61029					55	19	4	0	0	0	0.50484	1	6429	6429		28.495	12.756	1	12842000			27027	2241;2187	19372	19529	26470	26470					0.03538478414156998
KSFPGGKEY	9	Unmodified	_KSFPGGKEY_					0	0	0		ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1;ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000072958|ENST00000291439|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	MULTI-MSMS	A375_MHC_IP_R1	1	507.15814208984375	2	506.758549	1011.50255	-0.44588	-0.00022596	-0.17968	-9.1056E-05	-0.62557	-0.00031701	506.7584196767848	19.653	0.96539	19.653	19.368	20.334	0					44	18	3	0	0	0	0.0093155	3	4896	4896;5079;5138		104.48	60.626	1	4298400			27028	1554	19373	19530	26471;26472;26473	26471					-0.002745189651477631
KSFPGGKEY	9	Unmodified	_KSFPGGKEY_					0	0	0		ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1;ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000072958|ENST00000291439|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	MULTI-MSMS	A375_MHC_IP_R2	2	507.1578063964844	2	506.758549	1011.50255	-1.0054	-0.00050948	-0.24411	-0.0001237	-1.2495	-0.00063319	506.75852065107824	18.905	0.48264	19.508	19.452	19.935	0.60308					17	9	2	0	0	0	0.12591	1	5737	5737		46.022	22.002	1	11116000			27029	1554	19373	19530	26474	26474					-0.002745189651477631
KSFPGGKEYL	10	Unmodified	_KSFPGGKEYL_					0	0	0		ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1;ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000072958|ENST00000291439|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	MULTI-SECPEP	A375_MHC_IP_R1	1	563.700439453125	2	563.300581	1124.58661	-0.40117	-0.00022598	-1.046	-0.00058919	-1.4471	-0.00081517	563.3006555528568	33.656	1.0641	33.656	33.09	34.154	0					39	20	3	0	0	0	0.35635	1	10947	10947		51.488	21.647	1	2583400			27030	1554	19374	19531	26475	26475					0.029300121317419325
KSFPGGKEYL	10	Unmodified	_KSFPGGKEYL_					0	0	0		ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1;ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000072958|ENST00000291439|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	MULTI-SECPEP	A375_MHC_IP_R2	2	563.70068359375	2	563.300581	1124.58661	-0.59062	-0.0003327	0.61566	0.0003468	0.025037	1.4103E-05	563.3009137785025	32.758	0.76395	33.495	33.112	33.876	0.73691					26	14	3	0	0	0	0.35635	1	11679	11679		37.771	17.318	1	3594200			27031	1554	19374	19531	26476	26476					0.029300121317419325
KSFPGTQNF	9	Unmodified	_KSFPGTQNF_					0	0	0		ENSG00000115170|ENST00000434821|ACVR1	ENSG00000115170|ENST00000434821|ACVR1	ENSG00000115170|ENST00000434821|ACVR1	MULTI-SECPEP	A375_MHC_IP_R1	1	513.6555786132812	2	513.256174	1024.49779	-0.2913	-0.00014951	-0.073553	-3.7752E-05	-0.36485	-0.00018726	513.2559771692246	42.721	0.81093	42.721	42.386	43.197	0					36	15	3	0	0	0	0.10495	1	14793	14793		74.2	38.155	1	4894800			27032	3278	19375	19532	26477	26477					-0.013474031079113047
KSFPGTQNF	9	Unmodified	_KSFPGTQNF_					0	0	0		ENSG00000115170|ENST00000434821|ACVR1	ENSG00000115170|ENST00000434821|ACVR1	ENSG00000115170|ENST00000434821|ACVR1	MULTI-SECPEP	A375_MHC_IP_R2	2	513.655517578125	2	513.256174	1024.49779	-0.716	-0.00036749	-0.045125	-2.3161E-05	-0.76113	-0.00039065	513.25602258747	41.979	0.76762	42.753	42.401	43.169	0.77451					25	14	2	0	0	0	0.087712	1	15564	15564		75.761	44.492	1	5852000			27033	3278	19375	19532	26478	26478					-0.013474031079113047
KSFPHPIDKW	10	Unmodified	_KSFPHPIDKW_					0	0	0		ENSG00000115904|ENST00000402219|SOS1;nc|ENSG00000115904|Q07889-2|SOS1	ENSG00000115904|ENST00000402219|SOS1	ENSG00000115904|ENST00000402219|SOS1	MULTI-MSMS	A375_MHC_IP_R2	2	419.6178283691406	3	418.892507	1253.65569	-0.40031	-0.00016769	-0.036274	-1.5195E-05	-0.43658	-0.00018288	418.89251615955055	38.268	0.45909	39.042	38.791	39.25	0.77451					20	8	3	0	0	0	0.63381	1	14050	14050		18.34	10.863	1	1887100			27034	3349	19376	19533	26479	26479					0.03901096151298589
KSFPISHV	8	Unmodified	_KSFPISHV_					0	0	0		GJA1|p.R76C|1|0.45|ENSG00000152661|chr6:121447073-121447073|C/T|missense_variant;ENSG00000152661|ENST00000282561|GJA1	GJA1|p.R76C|1|0.45|ENSG00000152661|chr6:121447073-121447073|C/T|missense_variant	GJA1|p.R76C|1|0.45|ENSG00000152661|chr6:121447073-121447073|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	458.1581115722656	2	457.758352	913.502152	-0.57106	-0.00026141	0.42085	0.00019265	-0.15021	-6.876E-05	457.75844334544706	30.384	0.80833	30.384	30.2	31.009	0					28	15	3	0	0	0	0.1789	1	9637	9637		88.954	24.718	1	12196000			27035	5977	19377	19534	26480	26480					0.04194106105660467
KSFPNIGSL	9	Unmodified	_KSFPNIGSL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	A375_MHC_IP_R1	1	481.677978515625	2	481.768917	961.523281	0.10228	4.9274E-05	0.026851	1.2936E-05	0.12913	6.221E-05	481.76873913125826	69.441	0.71234	69.441	69.02	69.732	0					22	13	2	0	0	0	0.12748	1	25138	25138		45.74	11.637	1	1380000			27036	5898	19378	19535	26481	26481					0.04098071414523474
KSFPSIFKF	9	Unmodified	_KSFPSIFKF_					0	0	0		nc|ENSG00000113391|Q8WUF8-4|ARB2A;nc|ENSG00000113391|Q8WUF8-3|ARB2A;ENSG00000113391|ENST00000395965|FAM172A	nc|ENSG00000113391|Q8WUF8-4|ARB2A	nc|ENSG00000113391|Q8WUF8-4|ARB2A	MULTI-MSMS	A375_MHC_IP_R1	1	367.9430236816406	3	367.542816	1099.60662	0.078478	2.8844E-05	0.28861	0.00010608	0.36708	0.00013492	367.5427870241848	84.29	1.2192	84.29	83.786	85.005	0					29	14	3	0	0	0	0.084766	1	30847	30847		42.835	30.66	1	3120300			27037	3148	19379	19536	26482	26482					0.06079807862374764
KSFPSIFKF	9	Unmodified	_KSFPSIFKF_					0	0	0		nc|ENSG00000113391|Q8WUF8-4|ARB2A;nc|ENSG00000113391|Q8WUF8-3|ARB2A;ENSG00000113391|ENST00000395965|FAM172A	nc|ENSG00000113391|Q8WUF8-4|ARB2A	nc|ENSG00000113391|Q8WUF8-4|ARB2A	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2105102539062	2	550.810585	1099.60662	-0.73171	-0.00040304	0.16314	8.9857E-05	-0.56858	-0.00031318	550.8106429744513	84.315	0.96674	84.315	83.937	84.904	0					48	18	4	0	0	0	0.010947	1	30822	30822		128.58	60.74	1	38245000			27038	3148	19379	19536	26483	26483					0.06079807862374764
KSFPSIFKF	9	Unmodified	_KSFPSIFKF_					0	0	0		nc|ENSG00000113391|Q8WUF8-4|ARB2A;nc|ENSG00000113391|Q8WUF8-3|ARB2A;ENSG00000113391|ENST00000395965|FAM172A	nc|ENSG00000113391|Q8WUF8-4|ARB2A	nc|ENSG00000113391|Q8WUF8-4|ARB2A	MULTI-MSMS	A375_MHC_IP_R2	2	367.9429016113281	3	367.542816	1099.60662	0.19548	7.1849E-05	-0.16846	-6.1916E-05	0.027026	9.9332E-06	367.54273496727774	83.305	0.56007	84.044	83.745	84.305	0.73962					19	10	2	0	0	0	0.084766	1	31658	31658		42.835	26.269	1	4169600			27039	3148	19379	19536	26484	26484					0.06079807862374764
KSFPSIFKF	9	Unmodified	_KSFPSIFKF_					0	0	0		nc|ENSG00000113391|Q8WUF8-4|ARB2A;nc|ENSG00000113391|Q8WUF8-3|ARB2A;ENSG00000113391|ENST00000395965|FAM172A	nc|ENSG00000113391|Q8WUF8-4|ARB2A	nc|ENSG00000113391|Q8WUF8-4|ARB2A	MULTI-SECPEP	A375_MHC_IP_R2	2	551.2103271484375	2	550.810585	1099.60662	-0.75243	-0.00041444	0.020004	1.1019E-05	-0.73242	-0.00040343	550.8105959802302	83.28	1.1738	84.019	83.694	84.868	0.73962					53	22	4	0	0	0	0.011465	1	31618	31618		124.95	69.45	1	26721000			27040	3148	19379	19536	26485	26485					0.06079807862374764
KSFQAIHQF	9	Unmodified	_KSFQAIHQF_					0	0	0		ENSG00000188312|ENST00000375587|CENPP	ENSG00000188312|ENST00000375587|CENPP	ENSG00000188312|ENST00000375587|CENPP	MULTI-MSMS	A375_MHC_IP_R1	1	369.5977478027344	3	369.197819	1104.57163	0.23019	8.4986E-05	-0.19216	-7.0944E-05	0.038034	1.4042E-05	369.197688443552	36.237	0.50697	36.237	35.982	36.489	0					17	9	3	0	0	0	0.35164	1	12113	12113		27.088	12.131	1	4142300			27041	8900	19380	19537	26486	26486					0.023525650543888332
KSFQAIHQF	9	Unmodified	_KSFQAIHQF_					0	0	0		ENSG00000188312|ENST00000375587|CENPP	ENSG00000188312|ENST00000375587|CENPP	ENSG00000188312|ENST00000375587|CENPP	MULTI-SECPEP	A375_MHC_IP_R1	1	553.6922607421875	2	553.293091	1104.57163	-0.61331	-0.00033934	-0.6958	-0.00038498	-1.3091	-0.00072432	553.2927124705743	36.223	0.55716	36.223	35.881	36.439	0					21	10	3	0	0	0	0.011097	1	12110	12110		143.91	86.438	1	5982700			27042	8900	19380	19537	26487	26487					0.023525650543888332
KSFQAIHQF	9	Unmodified	_KSFQAIHQF_					0	0	0		ENSG00000188312|ENST00000375587|CENPP	ENSG00000188312|ENST00000375587|CENPP	ENSG00000188312|ENST00000375587|CENPP	MULTI-MSMS	A375_MHC_IP_R2	2	553.6926879882812	2	553.293091	1104.57163	-1.0138	-0.00056095	-0.020132	-1.1139E-05	-1.034	-0.00057209	553.2930832430013	35.254	0.65633	36.018	35.727	36.384	0.76338					24	12	4	0	0	0	0.0046244	1	12774	12774		189.73	122.39	1	7404100			27043	8900	19380	19537	26488	26488					0.023525650543888332
KSFQAIHQF	9	Unmodified	_KSFQAIHQF_					0	0	0		ENSG00000188312|ENST00000375587|CENPP	ENSG00000188312|ENST00000375587|CENPP	ENSG00000188312|ENST00000375587|CENPP	MULTI-SECPEP	A375_MHC_IP_R2	2	369.5977783203125	3	369.197819	1104.57163	0.036608	1.3516E-05	0.12473	4.605E-05	0.16134	5.9566E-05	369.1977447214378	35.235	0.80814	35.999	35.627	36.435	0.76338					25	15	3	0	0	0	0.32966	1	12778	12778		35.612	28.889	1	4146600			27044	8900	19380	19537	26489	26489					0.023525650543888332
KSFRDKGIFL	10	Unmodified	_KSFRDKGIFL_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000460132.5_1_7:100853286-100853899:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	A375_MHC_IP_R1	1	404.6363525390625	3	404.236274	1209.68699	-0.22987	-9.2921E-05	0.56306	0.00022761	0.33319	0.00013469	404.23646942707705	45.61	0.60735	45.61	45.384	45.992	0					33	11	4	0	0	0	0.35113	1	15949	15949		32.616	11.745	1	13657000			27045	2688	19381	19538	26490	26490					0.09053669185414037
KSFRDKGIFL	10	Unmodified	_KSFRDKGIFL_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000460132.5_1_7:100853286-100853899:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	A375_MHC_IP_R2	2	404.6360168457031	3	404.236274	1209.68699	-0.025542	-1.0325E-05	-0.26273	-0.00010621	-0.28827	-0.00011653	404.23607841690546	44.493	0.5589	45.262	45.035	45.594	0.7691					32	10	4	0	0	0	0.29801	1	16593	16593		41.347	14.259	1	12457000			27046	2688	19381	19538	26491	26491					0.09053669185414037
KSFSDGSNF	9	Unmodified	_KSFSDGSNF_					0	0	0		ENSG00000176371|ENST00000546148|ZSCAN2	ENSG00000176371|ENST00000546148|ZSCAN2	ENSG00000176371|ENST00000546148|ZSCAN2	MULTI-MSMS	A375_MHC_IP_R2	2	494.68255615234375	2	494.722164	987.429775	-0.49925	-0.00024699	0.41137	0.00020351	-0.08788	-4.3476E-05	494.72211370238927	31.742	0.30453	32.479	32.3	32.605	0.73691					8	5	2	0	0	0	0.14659	1	11230	11230		42.312	7.9108	1	1291100			27047	8015	19382	19539	26492	26492					-0.06444272758562875
KSFSDLFKRF	10	Unmodified	_KSFSDLFKRF_					0	0	0		ENSG00000013810|ENST00000313288|TACC3;ENST00000404054.3_1_4:1742398-1742845:+|nuORF;ENST00000470808.1_1_4:1741140-1742845:+|nuORF	ENSG00000013810|ENST00000313288|TACC3	ENSG00000013810|ENST00000313288|TACC3	MSMS	A375_MHC_IP_R1	1	425.62408447265625	3	425.567912	1273.68191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.925	1	72.925	72.425	73.425	0								0	0	0	0.11283	1	26541	26541		42.068	31.753	1				27048	1027	19383	19540	26493	26493					0.05601365322786478
KSFSESGINY	10	Unmodified	_KSFSESGINY_					0	0	0		ENST00000466152.5_1_20:49557422-49575060:-|nuORF;ENSG00000000419|ENST00000371588|DPM1	ENST00000466152.5_1_20:49557422-49575060:-|nuORF	ENST00000466152.5_1_20:49557422-49575060:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	566.6689453125	2	566.269478	1130.5244	-0.76033	-0.00043055	-2.7686	-0.0015678	-3.529	-0.0019983	566.2696846768141	41.398	0.7143	41.398	41.114	41.828	0					35	13	4	0	0	0	0.23154	2	14306	14268;14306		46.022	6.1855	1	17925000			27049	838	19384	19541	26494;26495	26495					-0.03563759007238332
KSFSESGINY	10	Unmodified	_KSFSESGINY_					0	0	0		ENST00000466152.5_1_20:49557422-49575060:-|nuORF;ENSG00000000419|ENST00000371588|DPM1	ENST00000466152.5_1_20:49557422-49575060:-|nuORF	ENST00000466152.5_1_20:49557422-49575060:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	566.7115478515625	2	566.269478	1130.5244	-0.57835	-0.0003275	-2.4425	-0.0013831	-3.0209	-0.0017106	566.2696476505938	40.74	0.55994	41.515	41.234	41.794	0.77451					31	10	4	0	0	0	0.094079	1	15123	15123		64.927	17.178	1	23244000			27050	838	19384	19541	26496	26496					-0.03563759007238332
KSFSFVRVI	9	Unmodified	_KSFSFVRVI_					0	0	0		nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8;ENST00000524925.1_1_11:77817969-77825348:-|nuORF	nc|ENSG00000159063|Q9BVK2-2|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	MULTI-SECPEP	A375_MHC_IP_R1	1	361.9501037597656	3	361.550082	1081.62842	0.63188	0.00022846	-0.6393	-0.00023114	-0.0074185	-2.6821E-06	361.5498586161202	69.269	0.50926	69.269	69.07	69.579	0					16	9	2	0	0	0	0.81368	1	25151	25151		2.2828	0.19677	1	2465800			27051	6345	19385	19542	26497	26497					0.09086612610940392
KSFSFVRVI	9	Unmodified	_KSFSFVRVI_					0	0	0		nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8;ENST00000524925.1_1_11:77817969-77825348:-|nuORF	nc|ENSG00000159063|Q9BVK2-2|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	MULTI-SECPEP	A375_MHC_IP_R1	1	542.2211303710938	2	541.821484	1081.62842	-0.14597	-7.9088E-05	-0.22578	-0.00012233	-0.37175	-0.00020142	541.8212804069287	69.329	0.50914	69.329	69.02	69.529	0					23	9	3	0	0	0	0.12938	1	25131	25131		46.022	27.876	1	7961600			27052	6345	19385	19542	26498	26498					0.09086612610940392
KSFSFVRVI	9	Unmodified	_KSFSFVRVI_					0	0	0		nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8;ENST00000524925.1_1_11:77817969-77825348:-|nuORF	nc|ENSG00000159063|Q9BVK2-2|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	MULTI-SECPEP	A375_MHC_IP_R2	2	361.949951171875	3	361.550082	1081.62842	-0.075344	-2.7241E-05	-0.047696	-1.7245E-05	-0.12304	-4.4485E-05	361.55003496071674	68.36	0.60736	69.095	68.816	69.423	0.73511					17	11	2	0	0	0	0.63749	1	25899	25899		11.518	4.4162	1	5781300			27053	6345	19385	19542	26499	26499					0.09086612610940392
KSFSKEELM	9	Oxidation (M)	_KSFSKEELM(Oxidation (M))_		KSFSKEELM(1)		KSFSKEELM(57)	0	0	1		ENSG00000101361|ENST00000329276|NOP56;ENST00000462630.5_1_20:2637388-2638937:+|nuORF;ENST00000492135.5_1_20:2636822-2638937:+|nuORF;ENST00000467196.5_3_20:2638092-2638937:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	A375_MHC_IP_R2	2	558.1755981445312	2	557.776082	1113.53761	-1.0871	-0.00060638	0.036142	2.0159E-05	-1.051	-0.00058622	557.7761804940616	22.049	0.45791	22.668	22.439	22.897	0.61932					14	8	2	0	0	0	0.068433	1	6958	6958		57.108	33.087	1	2405100			27054	2285	19386	19543	26500	26500		94			-0.01461644219534719
KSFSKSDLVNW	11	Unmodified	_KSFSKSDLVNW_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	A375_MHC_IP_R1	1	437.96258544921875	3	437.562827	1309.66665	-0.15922	-6.967E-05	-0.17366	-7.5989E-05	-0.33289	-0.00014566	437.5627181101179	55.133	0.45668	55.133	54.924	55.381	0					14	8	2	0	0	0	0.2128	1	19725	19725		39.111	24.273	1	3721500			27055	1676	19387	19544	26501	26501					0.02420453734930561
KSFSKSDLVNW	11	Unmodified	_KSFSKSDLVNW_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	A375_MHC_IP_R2	2	437.9626159667969	3	437.562827	1309.66665	-0.54541	-0.00023865	-0.0022106	-9.6727E-07	-0.54762	-0.00023962	437.5626924563202	54.334	0.55643	55.085	54.865	55.422	0.75075					24	10	3	0	0	0	0.1757	1	20500	20500		47.724	28.58	1	3386300			27056	1676	19387	19544	26502	26502					0.02420453734930561
KSFSKYVSF	9	Unmodified	_KSFSKYVSF_					0	0	0		ENSG00000204514|ENST00000435989|ZNF814;nc|ENSG00000269343|E7ETH6|ZNF587B;ENSG00000269343|ENST00000594901|ZNF587B	ENSG00000204514|ENST00000435989|ZNF814;nc|ENSG00000269343|E7ETH6|ZNF587B	nc|ENSG00000269343|E7ETH6|ZNF587B	MULTI-SECPEP	A375_MHC_IP_R1	1	547.1895751953125	2	546.78985	1091.56515	-0.37042	-0.00020254	-1.2539	-0.00068561	-1.6243	-0.00088816	546.7898046126617	47.777	0.50394	47.777	47.567	48.071	0					21	9	3	0	0	0	0.67471	1	16861	16861		22.658	3.2961	1	1726700			27057	9450;9980	19388	19545	26503	26503					0.023026271030403223
KSFSRYVSF	9	Unmodified	_KSFSRYVSF_					0	0	0		nc|ENSG00000198466|Q96SQ5-2|ZNF587;ENSG00000198466|ENST00000339656|ZNF587;ENSG00000173480|ENST00000312026|ZNF417;nc|ENSG00000173480|Q8TAU3-2|ZNF417	nc|ENSG00000198466|Q96SQ5-2|ZNF587	nc|ENSG00000198466|Q96SQ5-2|ZNF587	MULTI-MSMS	A375_MHC_IP_R1	1	561.19287109375	2	560.792924	1119.57129	-0.13823	-7.752E-05	-0.28515	-0.00015991	-0.42338	-0.00023743	560.7926954665271	48.272	0.70915	48.272	48.02	48.729	0					29	13	3	0	0	0	0.0099638	1	16996	16996		121.35	65.169	1	9295000			27058	7801	19389	19546	26504	26504					0.01629145334572968
KSFSRYVSF	9	Unmodified	_KSFSRYVSF_					0	0	0		nc|ENSG00000198466|Q96SQ5-2|ZNF587;ENSG00000198466|ENST00000339656|ZNF587;ENSG00000173480|ENST00000312026|ZNF417;nc|ENSG00000173480|Q8TAU3-2|ZNF417	nc|ENSG00000198466|Q96SQ5-2|ZNF587	nc|ENSG00000198466|Q96SQ5-2|ZNF587	MULTI-SECPEP	A375_MHC_IP_R1	1	374.5978698730469	3	374.197708	1119.57129	0.66819	0.00025004	-0.33312	-0.00012465	0.33507	0.00012538	374.1975373314075	48.241	0.50593	48.241	48.02	48.526	0					22	9	4	0	0	0	0.4465	1	17007	17007		23.801	8.8439	1	6370400			27059	7801	19389	19546	26505	26505					0.01629145334572968
KSFSRYVSF	9	Unmodified	_KSFSRYVSF_					0	0	0		nc|ENSG00000198466|Q96SQ5-2|ZNF587;ENSG00000198466|ENST00000339656|ZNF587;ENSG00000173480|ENST00000312026|ZNF417;nc|ENSG00000173480|Q8TAU3-2|ZNF417	nc|ENSG00000198466|Q96SQ5-2|ZNF587	nc|ENSG00000198466|Q96SQ5-2|ZNF587	MULTI-MSMS	A375_MHC_IP_R2	2	374.5978088378906	3	374.197708	1119.57129	0.5212	0.00019503	-0.37736	-0.00014121	0.14383	5.3821E-05	374.1974956039454	47.371	0.56153	48.132	47.867	48.429	0.76128					28	10	4	0	0	0	0.2487	1	17738	17738		32.037	10.501	1	8075100			27060	7801	19389	19546	26506	26506					0.01629145334572968
KSFSRYVSF	9	Unmodified	_KSFSRYVSF_					0	0	0		nc|ENSG00000198466|Q96SQ5-2|ZNF587;ENSG00000198466|ENST00000339656|ZNF587;ENSG00000173480|ENST00000312026|ZNF417;nc|ENSG00000173480|Q8TAU3-2|ZNF417	nc|ENSG00000198466|Q96SQ5-2|ZNF587	nc|ENSG00000198466|Q96SQ5-2|ZNF587	MULTI-MSMS	A375_MHC_IP_R2	2	561.192626953125	2	560.792924	1119.57129	-0.45518	-0.00025526	0.11023	6.1816E-05	-0.34495	-0.00019345	560.7928881719131	47.368	0.56141	48.13	47.919	48.48	0.76127					25	10	3	0	0	0	0.0098859	1	17753	17753		117.76	61.584	1	8629900			27061	7801	19389	19546	26507	26507					0.01629145334572968
KSFTMHSLT	9	Unmodified	_KSFTMHSLT_					0	0	0		nc|ENSG00000164756|Q8IWU4-2|SLC30A8;ENSG00000164756|ENST00000456015|SLC30A8	nc|ENSG00000164756|Q8IWU4-2|SLC30A8	nc|ENSG00000164756|Q8IWU4-2|SLC30A8	MULTI-SECPEP	A375_MHC_IP_R1	1	526.6651611328125	2	526.265684	1050.51682	-0.38942	-0.00020494	-0.045483	-2.3936E-05	-0.43491	-0.00022888	526.2655530515207	88.469	0.50907	88.469	88.154	88.663	0					14	9	2	0	0	0	0.67483	1	32477	32477		10.074	5.5451	1	1584100			27062	6878	19390	19547	26508	26508					-0.00642189808513649
KSFVDGLNF	9	Unmodified	_KSFVDGLNF_					0	0	0		ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	MULTI-MSMS	A375_MHC_IP_R1	1	514.1658935546875	2	513.766374	1025.5182	-0.74663	-0.00038359	-0.20174	-0.00010365	-0.94837	-0.00048724	513.7661923271477	90.903	0.55766	90.903	90.641	91.199	0					24	10	3	0	0	0	0.020087	1	33400	33400		83.429	23.355	1	3852100			27063	5221	19391	19548	26509	26509					0.0064576755189591495
KSFVDGLNF	9	Unmodified	_KSFVDGLNF_					0	0	0		ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	MULTI-MSMS	A375_MHC_IP_R2	2	514.1666259765625	2	513.766374	1025.5182	-0.6599	-0.00033903	-0.0060848	-3.1262E-06	-0.66598	-0.00034216	513.7663578821277	90.154	0.61282	90.886	90.493	91.106	0.7318					24	11	3	0	0	0	0.035419	1	34292	34292		70.332	12.861	1	3747100			27064	5221	19391	19548	26510	26510					0.0064576755189591495
KSFVKVYNY	9	Unmodified	_KSFVKVYNY_					0	0	0		ENSG00000131469|ENST00000253788|RPL27;RPL27|p.N78S|1|0.37|ENSG00000131469|chr17:43000084-43000084|A/G|missense_variant;ENST00000441321.1_1_2:120750895-120751159:-|nuORF	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-MSMS	A375_MHC_IP_R1	1	574.7106323242188	2	574.310949	1146.60735	-0.38268	-0.00021978	0.4483	0.00025747	0.065622	3.7687E-05	574.3111600013272	38.293	1.1706	38.293	38.067	39.238	0					64	22	4	0	0	0	0.017012	1	13200	13200		87.258	45.303	1	111480000			27065	4332	19392	19549	26511	26511					0.03990602511407815
KSFVKVYNY	9	Unmodified	_KSFVKVYNY_					0	0	0		ENSG00000131469|ENST00000253788|RPL27;RPL27|p.N78S|1|0.37|ENSG00000131469|chr17:43000084-43000084|A/G|missense_variant;ENST00000441321.1_1_2:120750895-120751159:-|nuORF	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-MSMS	A375_MHC_IP_R2	2	574.7105102539062	2	574.310949	1146.60735	-0.47479	-0.00027268	0.086711	4.9799E-05	-0.38808	-0.00022288	574.3109615630049	37.537	1.0748	38.308	38.02	39.095	0.7709					62	20	4	0	0	0	0.16945	1	13950	13950		40.239	19.825	1	90423000			27066	4332	19392	19549	26512	26512					0.03990602511407815
KSFVLPSW	8	Unmodified	_KSFVLPSW_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-MSMS	A375_MHC_IP_R1	1	482.66845703125	2	482.268553	962.522553	-0.15028	-7.2473E-05	-0.37758	-0.00018209	-0.52785	-0.00025457	482.26832741560656	93.048	0.76361	93.048	92.566	93.329	0					41	14	4	0	0	0	0.15187	1	34135	34135		85.642	26.963	1	17695000			27067	2300	19393	19550	26513	26513					0.03979276765460327
KSFVLPSW	8	Unmodified	_KSFVLPSW_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-SECPEP	A375_MHC_IP_R2	2	482.668701171875	2	482.268553	962.522553	-0.49483	-0.00023864	0.18299	8.8249E-05	-0.31184	-0.00015039	482.2685590351565	92.173	0.85735	92.912	92.534	93.392	0.73902					42	16	4	0	0	0	0.14575	1	35014	35014		85.642	26.963	1	16080000			27068	2300	19393	19550	26514	26514					0.03979276765460327
KSFYNETY	8	Unmodified	_KSFYNETY_					0	0	0		ENSG00000197241|ENST00000400906|SLC2A7	ENSG00000197241|ENST00000400906|SLC2A7	ENSG00000197241|ENST00000400906|SLC2A7	MSMS	A375_MHC_IP_R1	1	526.18408203125	2	526.24019	1050.46583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.794	1	78.794	78.294	79.294	0								0	0	0	0.16876	1	28756	28756		13.508	3.3245	1				27069	9135	19394	19551	26515	26515					-0.05738815581707968
KSGAVYTW	8	Unmodified	_KSGAVYTW_					0	0	0		HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant;ENSG00000128731|ENST00000261609|HERC2	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	456.6345520019531	2	456.23471	910.454868	0.2708	0.00012355	-0.71574	-0.00032655	-0.44494	-0.000203	456.2344351611902	44.74	0.55927	44.74	44.42	44.98	0					19	10	3	0	0	0	0.67331	1	15616	15616		41.84	13.353	1	2852500			27070	14109	19395	19552	26516	26516					-0.003941731653412717
KSGAVYTW	8	Unmodified	_KSGAVYTW_					0	0	0		HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant;ENSG00000128731|ENST00000261609|HERC2	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	456.6346130371094	2	456.23471	910.454868	-0.037095	-1.6924E-05	-0.71459	-0.00032602	-0.75169	-0.00034295	456.2344088608772	43.847	0.5544	44.616	44.38	44.934	0.7691					15	10	2	0	0	0	0.67331	1	16363	16363		41.84	9.5341	1	3301100			27071	14109	19395	19552	26517	26517					-0.003941731653412717
KSGEKLLIIA	10	Unmodified	_KSGEKLLIIA_					0	0	0			REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-MSMS	A375_MHC_IP_R2	2	358.29656982421875	3	357.897258	1070.66995	-0.54657	-0.00019562	0.060806	2.1762E-05	-0.48577	-0.00017385	357.8972451800094	21.741	2.6457	22.361	20.66	23.306	0.61932					121	51	5	0	0	0	0.71076	1	6228	6228		7.4771	0.85361	1	65488000	+		27072	19052	19396	19553	26518	26518					0.13743748579645398
KSGFPPEY	8	Unmodified	_KSGFPPEY_					0	0	0			REV__ENSG00000163513|ENST00000295754|TGFBR2	REV__ENSG00000163513|ENST00000295754|TGFBR2	MSMS	A375_MHC_IP_R1	1	462.6530456542969	2	462.726718	923.438883	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.304	1	37.304	36.804	37.804	0								0	0	0	0.16876	1	12564	12564		28.487	12.64	1		+		27073	20372	19397	19554	26519	26519					-0.025898794022396032
KSGSPVATF	9	Unmodified	_KSGSPVATF_					0	0	0		ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	MULTI-MSMS	A375_MHC_IP_R1	1	447.6397399902344	2	447.239993	892.465432	0.074886	3.3492E-05	-0.26122	-0.00011683	-0.18633	-8.3335E-05	447.23982523145	35.396	1.1202	35.396	35.064	36.184	0					55	21	4	0	0	0	0.056914	1	11731	11731		61.602	15.581	1	88827000			27074	2608	19398	19555	26520	26520					0.014898094890895663
KSGSPVATF	9	Unmodified	_KSGSPVATF_					0	0	0		ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	MULTI-MSMS	A375_MHC_IP_R2	2	447.6396179199219	2	447.239993	892.465432	-0.53785	-0.00024055	-0.054816	-2.4516E-05	-0.59266	-0.00026506	447.2399028254682	34.619	1.215	35.382	35.068	36.283	0.76338					52	23	5	0	0	0	0.035419	1	12445	12445		70.332	12.861	1	84211000			27075	2608	19398	19555	26521	26521					0.014898094890895663
KSHDLIQKW	9	Unmodified	_KSHDLIQKW_					0	0	0		nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;ENSG00000102230|ENST00000379144|PCYT1B	nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	MULTI-MSMS	A375_MHC_IP_R1	1	385.6089172363281	3	385.548741	1153.62439	-0.19269	-7.4292E-05	0.24924	9.6092E-05	0.056544	2.18E-05	385.5488878768198	29.428	0.20141	29.428	29.302	29.504	0					5	3	2	0	0	0	0.30259	1	9169	9169		30.431	14.157	1	13048000			27076	2366	19399	19556	26522	26522					0.05372523117239325
KSHDLIQKW	9	Unmodified	_KSHDLIQKW_					0	0	0		nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;ENSG00000102230|ENST00000379144|PCYT1B	nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	MULTI-MSMS	A375_MHC_IP_R2	2	385.6084899902344	3	385.548741	1153.62439	-0.66164	-0.0002551	0.44457	0.0001714	-0.21707	-8.3691E-05	385.8832215684681	28.56	0.20303	29.259	29.08	29.283	0.69872					5	3	2	0	0	0	0.22164	1	9858	9858		36.395	10.398	1	18917000			27077	2366	19399	19556	26523	26523					0.05372523117239325
KSHGKFFIL	9	Unmodified	_KSHGKFFIL_					0	0	0		ENST00000521988.5_2_8:93898270-93898507:-|nuORF	ENST00000521988.5_2_8:93898270-93898507:-|nuORF	ENST00000521988.5_2_8:93898270-93898507:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	538.6767578125	2	538.816202	1075.61785	-1.0193	-0.0005492	2.2451	0.0012097	1.2258	0.0006605	539.3181660120005	142.89	0.6563	142.89	142.44	143.09	0					18	12	2	0	0	0	0.75032	1	54765	54765		4.3292	4.3292	1	602370			27078	13019	19400	19557	26524	26524					0.08306629956518918
KSHGKFFIL	9	Unmodified	_KSHGKFFIL_					0	0	0		ENST00000521988.5_2_8:93898270-93898507:-|nuORF	ENST00000521988.5_2_8:93898270-93898507:-|nuORF	ENST00000521988.5_2_8:93898270-93898507:-|nuORF	MSMS	A375_MHC_IP_R2	2	538.6556396484375	2	538.816202	1075.61785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.77	1	142.8	142.3	143.3	0.030731								0	0	0	0.15486	1	55812	55812		4.3292	2.485	1				27079	13019	19400	19557	26525	26525					0.08306629956518918
KSHLNLDDRRW	11	Unmodified	_KSHLNLDDRRW_					0	0	0		ENST00000460777.1_1_1:6609570-6610501:-|nuORF;ENSG00000162408|ENST00000377705|NOL9	ENST00000460777.1_1_1:6609570-6610501:-|nuORF	ENST00000460777.1_1_1:6609570-6610501:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	361.0925598144531	4	360.693013	1438.74294	-0.62109	-0.00022402	-0.70751	-0.0002552	-1.3286	-0.00047922	360.6929631177956	26.065	0.40648	26.725	26.551	26.957	0.65992					17	7	3	0	0	0	0.73029	1	8818	8818		8.6273	4.5107	1	2101600			27080	6528	19401	19558	26526	26526					0.04112270354903558
KSHLNLDDRRW	11	Unmodified	_KSHLNLDDRRW_					0	0	0		ENST00000460777.1_1_1:6609570-6610501:-|nuORF;ENSG00000162408|ENST00000377705|NOL9	ENST00000460777.1_1_1:6609570-6610501:-|nuORF	ENST00000460777.1_1_1:6609570-6610501:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		4	360.693013	1438.74294	-0.14699	-5.3017E-05	0.16625	5.9963E-05	0.019259	6.9465E-06	360.69308869385304	26.803	0.40248	26.803	26.575	26.978	0	0.039272	0.00032804	NaN	8.6273	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2527800			27081	6528	19401	19558							0.04112270354903558
KSHPSIIIW	9	Unmodified	_KSHPSIIIW_					0	0	0		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103553216-103586042:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	MULTI-SECPEP	A375_MHC_IP_R1	1	541.2134399414062	2	540.813659	1079.61277	-0.81496	-0.00044074	0.51847	0.00028039	-0.2965	-0.00016035	540.8139624287816	66.388	0.76092	66.388	65.819	66.58	0					22	14	3	0	0	0	0.4465	1	24033	24033		31.268	0.6318	1	3617400			27082	2865	19402	19559	26527	26527					0.07614326093903401
KSHPSIIIW	9	Unmodified	_KSHPSIIIW_					0	0	0		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103553216-103586042:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	MULTI-SECPEP	A375_MHC_IP_R2	2	541.21337890625	2	540.813659	1079.61277	-0.9231	-0.00049923	0.14494	7.8383E-05	-0.77817	-0.00042084	540.8135658438384	65.187	0.91459	65.925	65.308	66.222	0.73812					22	9	3	0	0	0	0.40377	1	24724	24724		41.956	11.319	1	3887400			27083	2865	19402	19559	26528	26528					0.07614326093903401
KSIANQIQEDW	11	Unmodified	_KSIANQIQEDW_					0	0	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	A375_MHC_IP_R1	1	666.2225341796875	2	666.333141	1330.65173	-0.71142	-0.00047404	0.034459	2.2961E-05	-0.67696	-0.00045108	666.3329211518047	65.845	0.20374	65.845	65.717	65.921	0					5	3	2	0	0	0	0.64117	1	23808	23808		29.281	19.207	1	1056700			27084	5800	19403	19560	26529	26529					-0.0003703813306401571
KSICKIKKIY	10	Unmodified	_KSICKIKKIY_					0	0	0		CLEC4C|p.M208I|3|0.41|ENSG00000198178|chr12:7729614-7729614|C/T|missense_variant	CLEC4C|p.M208I|3|0.41|ENSG00000198178|chr12:7729614-7729614|C/T|missense_variant	CLEC4C|p.M208I|3|0.41|ENSG00000198178|chr12:7729614-7729614|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	408.5909423828125	3	408.58966	1222.74715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.891	1	29.589	29.089	30.089	0.69872								0	0	0	0.15622	1	10034	10034		0.62683	0	1				27085	537	19404	19561	26530	26530					0.14468643524287472
KSIDLIQKW	9	Unmodified	_KSIDLIQKW_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	MULTI-MSMS	A375_MHC_IP_R1	1	377.957275390625	3	377.557125	1129.64954	0.31972	0.00012071	-0.071999	-2.7184E-05	0.24772	9.3529E-05	377.55706537176883	60.695	0.96798	60.695	60.363	61.331	0					49	18	5	0	0	0	0.095445	1	21819	21819		51.488	20.785	1	62766000			27086	6469	19405	19562	26531	26531					0.089905779198034
KSIDLIQKW	9	Unmodified	_KSIDLIQKW_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	MULTI-SECPEP	A375_MHC_IP_R1	1	566.2313232421875	2	565.832049	1129.64954	-0.40713	-0.00023037	0.084195	4.764E-05	-0.32293	-0.00018272	565.8320623768506	60.694	1.0189	60.694	60.363	61.382	0					52	19	4	0	0	0	0.0095758	1	21797	21797		163.69	67.576	1	111750000			27087	6469	19405	19562	26532	26532					0.089905779198034
KSIDLIQKW	9	Unmodified	_KSIDLIQKW_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	MULTI-MSMS	A375_MHC_IP_R2	2	377.95697021484375	3	377.557125	1129.64954	-0.19856	-7.4966E-05	0.24299	9.1744E-05	0.044436	1.6777E-05	377.55718060445975	59.78	0.91314	60.527	60.198	61.111	0.74714					55	17	5	0	0	0	0.063448	1	22570	22570		59.052	27.015	1	80341000			27088	6469	19405	19562	26533	26533					0.089905779198034
KSIDLIQKW	9	Unmodified	_KSIDLIQKW_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	MULTI-SECPEP	A375_MHC_IP_R2	2	565.1744995117188	2	565.832049	1129.64954	-0.79435	-0.00044947	0.1691	9.5683E-05	-0.62525	-0.00035378	565.832112013834	59.778	1.0657	60.526	60.148	61.213	0.74714					52	20	4	0	0	0	1.9351E-08	1	22582	22582		220.1	123.99	1	91145000			27089	6469	19405	19562	26534	26534					0.089905779198034
KSIDLKDKY	9	Unmodified	_KSIDLKDKY_					0	0	0		ENSG00000144381|ENST00000388968|HSPD1;nc|ENSG00000144381|P10809-2|HSPD1;ENST00000461097.1_1_2:198361816-198363572:-|nuORF;ENST00000503199.1_1_5:21882861-21883359:+|nuORF;ENST00000476746.5_1_2:198360008-198364584:-|nuORF	ENSG00000144381|ENST00000388968|HSPD1	ENSG00000144381|ENST00000388968|HSPD1	MULTI-MSMS	A375_MHC_IP_R1	1	370.94500732421875	3	370.544885	1108.61282	0.58964	0.00021849	-0.49451	-0.00018324	0.09513	3.525E-05	370.5446364794211	21.66	0.25255	21.66	21.505	21.757	0					8	4	2	0	0	0	0.68382	1	5723	5723		8.4443	0.49891	1	2712200			27090	5482	19406	19563	26535	26535					0.062862813032325
KSIEERQLL	9	Unmodified	_KSIEERQLL_					0	0	0		nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	MULTI-SECPEP	A375_MHC_IP_R1	1	557.6526489257812	2	558.324588	1114.63462	-0.66541	-0.00037151	0.076481	4.2701E-05	-0.58893	-0.00032881	558.3246067873773	33.014	0.40473	33.014	32.785	33.19	0					17	7	3	0	0	0	0.75782	1	10746	10746		7.1017	3.8204	1	8534000			27091	3809	19407	19564	26536	26536					0.081890860518115
KSIEERQLL	9	Unmodified	_KSIEERQLL_					0	0	0		nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	MULTI-SECPEP	A375_MHC_IP_R2	2	558.7244262695312	2	558.324588	1114.63462	-0.73562	-0.00041071	0.24276	0.00013554	-0.49286	-0.00027518	558.3246675034477	32.146	0.40753	32.882	32.704	33.112	0.73692					16	7	3	0	0	0	0.39266	1	11422	11422		35.612	11.822	1	8406700			27092	3809	19407	19564	26537	26537					0.081890860518115
KSIEERVTI	9	Unmodified	_KSIEERVTI_					0	0	0		ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	MULTI-SECPEP	A375_MHC_IP_R1	1	538.2107543945312	2	537.811313	1073.60807	-0.88797	-0.00047756	0.68832	0.00037019	-0.19965	-0.00010737	537.8118185844328	32.861	0.50489	32.861	32.535	33.04	0					14	9	2	0	0	0	0.23313	1	10674	10674		29.437	15.531	1	3781600			27093	8486	19408	19565	26538	26538					0.07421397160487686
KSIEERVTI	9	Unmodified	_KSIEERVTI_					0	0	0		ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	MULTI-SECPEP	A375_MHC_IP_R2	2	538.2109375	2	537.811313	1073.60807	-0.87726	-0.0004718	0.56617	0.00030449	-0.31109	-0.00016731	537.8117585164857	32.038	0.40518	32.775	32.555	32.96	0.73692					11	7	2	0	0	0	0.59614	1	11408	11408		12.873	0	1	2596400			27094	8486	19408	19565	26539	26539					0.07421397160487686
KSIELFYKF	9	Unmodified	_KSIELFYKF_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	A375_MHC_IP_R1	1	588.2288208007812	2	587.828975	1173.6434	-0.11142	-6.5498E-05	0.16135	9.4849E-05	0.04993	2.935E-05	587.8289033097487	78.559	0.45541	78.559	78.352	78.807	0					17	8	3	0	0	0	0.011364	1	28674	28674		117.84	75.998	1	4200300			27095	9866	19409	19566	26540	26540					0.06352059688265399
KSIELFYKF	9	Unmodified	_KSIELFYKF_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	A375_MHC_IP_R2	2	392.62152099609375	3	392.221742	1173.6434	-0.19769	-7.7538E-05	-0.10634	-4.171E-05	-0.30403	-0.00011925	392.2216534287134	77.667	0.40697	78.41	78.165	78.572	0.74293					13	7	2	0	0	0	0.29123	1	29518	29518		23.801	14.825	1	1357200			27096	9866	19409	19566	26541	26541					0.06352059688265399
KSIELFYKF	9	Unmodified	_KSIELFYKF_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	A375_MHC_IP_R2	2	588.1627807617188	2	587.828975	1173.6434	-0.57819	-0.00033988	-0.029625	-1.7415E-05	-0.60782	-0.00035729	587.8288799769269	77.648	0.35617	78.391	78.216	78.572	0.74293					13	6	3	0	0	0	0.10518	1	29539	29539		49.742	9.7922	1	3485600			27097	9866	19409	19566	26542	26542					0.06352059688265399
KSIFDPNTF	9	Unmodified	_KSIFDPNTF_					0	0	0		ENST00000475613.6_1_10:79580836-79628876:-|nuORF;nc|ENSG00000151208|Q8TDM6-3|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENSG00000151208|ENST00000372391|DLG5	ENST00000475613.6_1_10:79580836-79628876:-|nuORF	ENST00000475613.6_1_10:79580836-79628876:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	535.1712646484375	2	534.771657	1067.52876	-0.71778	-0.00038385	0.086316	4.6159E-05	-0.63146	-0.00033769	534.7716264773438	79.631	0.55964	80.376	80.047	80.607	0.74474					16	10	2	0	0	0	0.21838	1	30227	30227		57.249	22.847	1	3311000			27098	5886	19410	19567	26543	26543					-0.0023024979368528875
KSIGPPEMHKY	11	Unmodified	_KSIGPPEMHKY_					0	0	0		ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	MULTI-SECPEP	A375_MHC_IP_R2	2	429.2912292480469	3	429.556907	1285.64889	-0.49244	-0.00021153	0.86898	0.00037328	0.37654	0.00016175	429.8919798306206	23.627	0.45565	24.257	23.928	24.384	0.63014					10	8	2	0	0	0	0.92891	1	7655	7655		21.666	12.914	1	2364200			27099	9360	19411	19568	26544	26544					0.01749415208450955
KSIIKAKLKG	10	Unmodified	_KSIIKAKLKG_					0	0	0			REV__nc|ENSG00000214198|Q6P2S7-2|TTC41P	REV__nc|ENSG00000214198|Q6P2S7-2|TTC41P	MSMS	A375_MHC_IP_R2	2	543.7737426757812	2	543.373884	1084.73321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142	1	142.03	141.53	142.53	0.030731								0	0	0	0.15642	1	55521	55521		0	0	1		+		27100	27490	19412	19569	26545	26545					0.19423734087467892
KSINIIKKY	9	Unmodified	_KSINIIKKY_					0	0	0		ENSG00000198056|ENST00000338193|PRIM1	ENSG00000198056|ENST00000338193|PRIM1	ENSG00000198056|ENST00000338193|PRIM1	MULTI-MSMS	A375_MHC_IP_R1	1	369.9693908691406	3	369.569253	1105.68593	0.22243	8.2204E-05	0.10407	3.846E-05	0.3265	0.00012066	369.5692428589902	24.723	0.35547	24.723	24.597	24.953	0					11	6	2	0	0	0	0.22164	1	7104	7104		36.395	2.1733	1	8683800			27101	9225	19413	19570	26546	26546					0.13731454816525002
KSINYYDL	8	Unmodified	_KSINYYDL_					0	0	0		tr|U7T2F8|U7T2F8_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00551PE=4SV=1	tr|U7T2F8|U7T2F8_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00551PE=4SV=1	tr|U7T2F8|U7T2F8_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00551PE=4SV=1	MSMS	A375_MHC_IP_R1	1	508.21832275390625	2	508.258382	1014.50221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.143	1	25.143	24.643	25.643	0								0	0	0	0.16876	1	7281	7281		13.906	3.0821	1				27102	29931	19414	19571	26547	26547					-0.004459386850044211
KSIPVGVGQIY	11	Unmodified	_KSIPVGVGQIY_					0	0	0		ENST00000586854.1_1_18:43316553-43319662:+|nuORF;ENSG00000141469|ENST00000321925|SLC14A1;nc|ENSG00000141469|Q13336-2|SLC14A1	ENST00000586854.1_1_18:43316553-43319662:+|nuORF	ENST00000586854.1_1_18:43316553-43319662:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	581.2371215820312	2	580.837331	1159.66011	-0.315	-0.00018296	-0.34917	-0.00020281	-0.66416	-0.00038577	580.8371783971425	64.792	0.45819	65.53	65.308	65.766	0.73811					19	8	4	0	0	0	0.08631	1	24571	24571		70.929	30.979	1	3711200			27103	5245	19415	19572	26548	26548					0.08666560574238247
KSIQEVQKRF	10	Unmodified	_KSIQEVQKRF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-SECPEP	A375_MHC_IP_R1	1	421.978759765625	3	421.5787	1261.71427	0.18573	7.8299E-05	-0.18432	-7.7705E-05	0.0014083	5.937E-07	421.57856345624265	20.825	0.35846	20.825	20.638	20.997	0					16	6	3	0	0	0	0.40453	1	5397	5397		52.193	34.33	1	5073200			27104	1156	19416	19573	26549	26549					0.0938815272577358
KSIQEVQKRF	10	Unmodified	_KSIQEVQKRF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	A375_MHC_IP_R2	2	421.6188659667969	3	421.5787	1261.71427	-0.40683	-0.00017151	0.13842	5.8356E-05	-0.26841	-0.00011316	421.5787556416285	19.481	0.60826	20.087	19.836	20.445	0.60612					20	11	2	0	0	0	0.36923	1	5980	5980		35.996	24.931	1	2196800			27105	1156	19416	19573	26550	26550					0.0938815272577358
KSISLPSL	8	Unmodified	_KSISLPSL_					0	0	0		CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	MULTI-MSMS	A375_MHC_IP_R1	1	423.16058349609375	2	422.760561	843.506569	0.13602	5.7505E-05	-0.24795	-0.00010482	-0.11193	-4.7318E-05	422.7604122642213	70.339	0.66397	70.339	70.034	70.698	0					25	12	3	0	0	0	0.15187	1	25493	25493		85.642	4.0284	1	4566500		+	27106	574	19417	19574	26551	26551					0.07855570528568023
KSITIIGGGF	10	Unmodified	_KSITIIGGGF_					0	0	0		nc|ENSG00000156709|O95831-4|AIFM1;nc|ENSG00000156709|O95831-3|AIFM1;ENSG00000156709|ENST00000287295|AIFM1	nc|ENSG00000156709|O95831-4|AIFM1	nc|ENSG00000156709|O95831-4|AIFM1	MULTI-MSMS	A375_MHC_IP_R2	2	497.19244384765625	2	496.792392	991.570232	-0.48857	-0.00024272	1.4324	0.00071161	0.94384	0.00046889	496.7932746556464	77.248	0.96409	77.991	77.504	78.468	0.74293					38	18	3	0	0	0	0.0091306	2	29353	29320;29353		128.93	73.43	1	5189200			27107	6207	19418	19575	26552;26553	26553					0.07410930965670559
KSKDFPEARAY	11	Unmodified	_KSKDFPEARAY_					0	0	0		CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	MULTI-SECPEP	A375_MHC_IP_R1	1	437.96759033203125	3	437.894577	1310.6619	0.11971	5.2419E-05	-0.81665	-0.00035761	-0.69694	-0.00030519	437.89430183361833	21.507	0.15245	21.507	21.403	21.555	0					4	2	2	0	0	0	0.99466	1	5666	5666		7.8089	4.2218	1	465310		+	27108	574	19419	19576	26554	26554					0.018995695921830702
KSKDFPEARAY	11	Unmodified	_KSKDFPEARAY_					0	0	0		CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	MULTI-SECPEP	A375_MHC_IP_R2	2	437.9673156738281	3	437.894577	1310.6619	-0.59997	-0.00026272	-1.306	-0.00057187	-1.9059	-0.00083459	437.89384499230033	19.629	0.70885	20.239	19.892	20.6	0.61029					25	13	3	0	0	0	0.99711	1	6092	6092		7.4291	2.0264	1	1076600		+	27109	574	19419	19576	26555	26555					0.018995695921830702
KSKDFVQVM	9	Oxidation (M)	_KSKDFVQVM(Oxidation (M))_		KSKDFVQVM(1)		KSKDFVQVM(79)	0	0	1		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	A375_MHC_IP_R1	1	549.7083129882812	2	549.286617	1096.55868	-0.56774	-0.00031185	-0.97771	-0.00053704	-1.5455	-0.0008489	549.2864466248117	25.194	1.116	25.194	24.801	25.917	0					30	21	2	0	0	0	0.05021	1	7367	7367		78.728	14.492	1	6950600			27110	9866	19420	19577	26556	26556		445			0.014263658800018675
KSKDFVQVM	9	Oxidation (M)	_KSKDFVQVM(Oxidation (M))_		KSKDFVQVM(1)		KSKDFVQVM(90)	0	0	1		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	A375_MHC_IP_R2	2	549.6858520507812	2	549.286617	1096.55868	-1.195	-0.0006564	-1.1031	-0.00060592	-2.2981	-0.0012623	549.2862970997381	24.912	0.91545	25.555	25.212	26.128	0.64368					29	17	3	0	0	0	0.038931	1	8320	8320		90.135	35.361	1	2675400			27111	9866	19420	19577	26557	26557		445			0.014263658800018675
KSKDFVQVM	9	Unmodified	_KSKDFVQVM_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	A375_MHC_IP_R2	2	361.5948181152344	3	361.195198	1080.56377	-0.74813	-0.00027022	0.099623	3.5983E-05	-0.64851	-0.00023424	361.19519794246173	37.223	0.45547	37.994	37.716	38.171	0.7709					19	8	3	0	0	0	0.72222	1	13609	13609		14.957	6.8016	1	7507900			27112	9866	19420	19578	26558	26558					0.026706697426334358
KSKDTLLSVSN	11	Unmodified	_KSKDTLLSVSN_					0	0	0			REV__MUC16|p.S3381L|3|0.08|ENSG00000181143|chr19:8966628-8966628|G/A|missense_variant	REV__MUC16|p.S3381L|3|0.08|ENSG00000181143|chr19:8966628-8966628|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	596.732421875	2	596.33261	1190.65067	-0.61982	-0.00036962	0.31707	0.00018908	-0.30275	-0.00018054	596.3326193962331	130.42	1.6246	130.42	129.65	131.28	0					64	31	3	0	0	0	0.7342	1	49999	49999		4.897	0.56777	1	15422000	+		27113	27052	19421	19579	26559	26559					0.06296747498072364
KSKDTLLSVSN	11	Unmodified	_KSKDTLLSVSN_					0	0	0			REV__MUC16|p.S3381L|3|0.08|ENSG00000181143|chr19:8966628-8966628|G/A|missense_variant	REV__MUC16|p.S3381L|3|0.08|ENSG00000181143|chr19:8966628-8966628|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	596.732666015625	2	596.33261	1190.65067	-0.58309	-0.00034771	0.28014	0.00016706	-0.30295	-0.00018066	596.3325708552778	130.31	1.8238	130.52	129.69	131.52	0.21419					78	35	3	0	0	0	0.7342	1	51000	51000		4.897	1.3005	1	19474000	+		27114	27052	19421	19579	26560	26560					0.06296747498072364
KSKEDLVSQGF	11	Unmodified	_KSKEDLVSQGF_					0	0	0		ENSG00000167770|ENST00000538426|OTUB1;nc|ENSG00000167770|Q96FW1-2|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	MULTI-MSMS	A375_MHC_IP_R1	1	413.61895751953125	3	413.218949	1236.63502	0.33606	0.00013887	-0.19276	-7.965E-05	0.1433	5.9215E-05	413.2188430733711	35.068	1.1721	35.068	34.657	35.83	0					56	22	4	0	0	0	0.18322	1	11575	11575		55.839	27.657	1	70330000			27115	7222	19422	19580	26561	26561					0.026164609809939066
KSKEDLVSQGF	11	Unmodified	_KSKEDLVSQGF_					0	0	0		ENSG00000167770|ENST00000538426|OTUB1;nc|ENSG00000167770|Q96FW1-2|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	MULTI-MSMS	A375_MHC_IP_R1	1	619.7244873046875	2	619.324785	1236.63502	-0.31203	-0.00019325	0.024502	1.5175E-05	-0.28753	-0.00017808	619.324762159994	35.072	0.81435	35.072	34.657	35.472	0					35	15	4	0	0	0	2.7398E-05	1	11617	11617		164.48	131.69	1	21564000			27116	7222	19422	19580	26562	26562					0.026164609809939066
KSKEDLVSQGF	11	Unmodified	_KSKEDLVSQGF_					0	0	0		ENSG00000167770|ENST00000538426|OTUB1;nc|ENSG00000167770|Q96FW1-2|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	MULTI-MSMS	A375_MHC_IP_R2	2	413.6185302734375	3	413.218949	1236.63502	-0.2882	-0.00011909	-0.023005	-9.5062E-06	-0.31121	-0.0001286	413.2189038688601	34.326	1.2157	35.079	34.702	35.918	0.75225					73	23	5	0	0	0	0.18322	1	12295	12295		55.839	22.941	1	69250000			27117	7222	19422	19580	26563	26563					0.026164609809939066
KSKEDLVSQGF	11	Unmodified	_KSKEDLVSQGF_					0	0	0		ENSG00000167770|ENST00000538426|OTUB1;nc|ENSG00000167770|Q96FW1-2|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	MULTI-MSMS	A375_MHC_IP_R2	2	619.7237548828125	2	619.324785	1236.63502	-0.99929	-0.00061889	0.17383	0.00010766	-0.82546	-0.00051123	619.3248319899204	34.254	0.71181	35.006	34.702	35.414	0.75225					29	13	3	0	0	0	0.00012387	1	12310	12310		157.49	115.53	1	19147000			27118	7222	19422	19580	26564	26564					0.026164609809939066
KSKEVAWNL	9	Unmodified	_KSKEVAWNL_					0	0	0		nc|ENSG00000161533|Q15067|ACOX1;nc|ENSG00000161533|Q15067-3|ACOX1;ENSG00000161533|ENST00000293217|ACOX1	nc|ENSG00000161533|Q15067|ACOX1	nc|ENSG00000161533|Q15067|ACOX1	MULTI-SECPEP	A375_MHC_IP_R1	1	538.20068359375	2	537.800749	1073.58694	-0.80582	-0.00043337	0.57334	0.00030834	-0.23248	-0.00012503	537.8012252974055	40.033	0.45888	40.033	39.744	40.203	0					15	8	3	0	0	0	0.14606	1	13766	13766		55.503	15.553	1	3363700			27119	14715	19423	19581	26565	26565					0.0530943185160595
KSKFKMIKY	9	Unmodified	_KSKFKMIKY_					0	0	0			REV__nc|ENSG00000101868|P09884|POLA1	REV__nc|ENSG00000101868|P09884|POLA1	MULTI-MSMS	A375_MHC_IP_R2	2	391.61669921875	3	391.566855	1171.67874	-0.52336	-0.00020493	0.015596	6.1069E-06	-0.50777	-0.00019882	391.9011146669397	21.999	0.56094	22.618	22.439	23	0.61932					12	10	2	0	0	0	0.7235	1	6948	6948		4.897	4.897	1	1350900	+		27120	27151	19424	19582	26566	26566					0.09976398944422726
KSKGSSGS	8	Unmodified	_KSKGSSGS_					0	0	0			REV__ENSG00000154654|ENST00000400546|NCAM2	REV__ENSG00000154654|ENST00000400546|NCAM2	MULTI-SECPEP	A375_MHC_IP_R2	2	737.9715576171875	1	737.378808	736.371532	-0.8978	-0.00066202	0.21643	0.00015959	-0.68137	-0.00050243	737.3785105985833	39.419	0.25308	40.194	40.016	40.269	0.77451					6	4	2	0	0	0	0.972	1	14515	14515		2.0598	0	1	2032000	+		27121	19891	19425	19583	26567	26567					-0.007199096131785154
KSKKDKNATL	10	Unmodified	_KSKKDKNATL_					0	0	0			REV__tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	REV__tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	567.237548828125	2	566.837862	1131.66117	-0.62138	-0.00035222	0.67988	0.00038538	0.058498	3.3159E-05	566.838015763176	133	0.61411	133	132.84	133.46	0					28	11	4	0	0	0	0.94651	1	51321	51321		0.35063	0	1	14819000	+		27122	28736	19426	19584	26568	26568					0.10060774943121942
KSKKEKKPG	9	Unmodified	_KSKKEKKPG_					0	0	0			REV__ENSG00000111642|ENST00000544040|CHD4	REV__ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	A375_MHC_IP_R2	2	515.7238159179688	2	515.324391	1028.63423	-0.56951	-0.00029348	-0.3068	-0.0001581	-0.87631	-0.00045159	515.3241225624473	43.777	0.65537	44.546	44.228	44.883	0.76909					26	12	3	0	0	0	0.64136	1	16309	16309		12.241	0	1	3638000	+		27123	17680	19427	19585	26569	26569					0.1210571112260368
KSKKKRIYI	9	Unmodified	_KSKKKRIYI_					0	0	0			REV__VCPKMT|p.P228S|2|0.53|ENSG00000100483|chr14:50109707-50109707|G/A|missense_variant	REV__VCPKMT|p.P228S|2|0.53|ENSG00000100483|chr14:50109707-50109707|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	582.6223754882812	2	582.384783	1162.75501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.22	1	143.22	142.72	143.72	0								0	0	0	0.15486	1	54947	54947		2.0598	0.40713	1		+		27124	17097	19428	19586	26570	26570					0.18014538836087013
KSKLDAEVSKW	11	Unmodified	_KSKLDAEVSKW_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	A375_MHC_IP_R1	1	431.3069763183594	3	430.906594	1289.69795	-0.091624	-3.9481E-05	0.73588	0.00031709	0.64425	0.00027761	430.90703502544505	31.632	0.60888	31.632	31.312	31.921	0					40	11	5	0	0	0	1.1379E-08	4	10148	10090;10148;10176;10177		165.42	132.52	1	25066000			27125	1184	19429	19587	26571;26572;26573;26574	26572					0.06469026769036645
KSKLDAEVSKW	11	Unmodified	_KSKLDAEVSKW_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	A375_MHC_IP_R2	2	431.3067932128906	3	430.906594	1289.69795	-0.25038	-0.00010789	0.22884	9.8608E-05	-0.021543	-9.283E-06	430.9068660532668	30.75	0.60505	31.468	31.216	31.821	0.71857					34	11	4	0	0	0	1.1379E-08	3	10861	10802;10861;10910		165.42	132.52	1	24896000			27126	1184	19429	19587	26575;26576;26577	26576					0.06469026769036645
KSKLLKKIEP	10	Unmodified	_KSKLLKKIEP_					0	0	0			REV__tr|U7SGS6|U7SGS6_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02306PE=3SV=1	REV__tr|U7SGS6|U7SGS6_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02306PE=3SV=1	MSMS	A375_MHC_IP_R1	1	395.2328796386719	3	395.263941	1182.76999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.79	1	18.79	18.29	19.29	0								0	0	0	0.15637	1	4503	4503		0.15932	0.01943	1		+		27127	28196	19430	19588	26578	26578					0.18591985913417375
KSKLLKKIEP	10	Unmodified	_KSKLLKKIEP_					0	0	0			REV__tr|U7SGS6|U7SGS6_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02306PE=3SV=1	REV__tr|U7SGS6|U7SGS6_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02306PE=3SV=1	MSMS	A375_MHC_IP_R1	1	395.2872009277344	3	395.263941	1182.76999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.924	1	18.924	18.424	19.424	0								0	0	0	0.15637	1	4546	4546		0.15932	0.15932	1		+		27128	28196	19430	19588	26579	26579					0.18591985913417375
KSKLRLSALSS	11	Unmodified	_KSKLRLSALSS_					0	0	0			REV__ENSG00000069011|ENST00000265340|PITX1	REV__ENSG00000069011|ENST00000265340|PITX1	MULTI-MSMS	A375_MHC_IP_R1	1	595.76611328125	2	595.366787	1188.71902	-0.74472	-0.00044338	0.26594	0.00015833	-0.47879	-0.00028505	595.3667619661074	142.82	0.40353	142.82	142.64	143.04	0					13	7	2	0	0	0	0.73647	1	54802	54802		2.7352	0.89096	1	1621400	+		27129	16551	19431	19589	26580	26580					0.13221036868549163
KSKLRLSALSS	11	Unmodified	_KSKLRLSALSS_					0	0	0			REV__ENSG00000069011|ENST00000265340|PITX1	REV__ENSG00000069011|ENST00000265340|PITX1	MULTI-MSMS	A375_MHC_IP_R2	2	595.7669067382812	2	595.366787	1188.71902	-0.37465	-0.00022305	-0.21958	-0.00013073	-0.59423	-0.00035378	595.3664577496703	142.83	0.55574	142.86	142.64	143.19	0.030731					17	10	2	0	0	0	0.73647	1	55843	55843		2.7352	0.89096	1	2339400	+		27130	16551	19431	19589	26581	26581					0.13221036868549163
KSKNILVRM	9	Unmodified	_KSKNILVRM_					0	0	0		ENSG00000243147|ENST00000296102|MRPL33;MRPL33|p.S22Afs*20|1|0.23|ENSG00000243147|chr2:27774446-27774446|A/-|frameshift_variant	ENSG00000243147|ENST00000296102|MRPL33	ENSG00000243147|ENST00000296102|MRPL33	MULTI-MSMS	A375_MHC_IP_R1	1	363.9876708984375	3	363.558471	1087.65358	0.23165	8.4218E-05	-1.0697	-0.0003889	-0.83806	-0.00030469	363.55809656120385	25.192	0.30422	25.192	25.053	25.357	0					8	5	2	0	0	0	0.58268	1	7296	7296		15.739	8.6369	1	5535500			27131	9805	19432	19590	26582	26582					0.11326344141843947
KSKNILVRM	9	Unmodified	_KSKNILVRM_					0	0	0		ENSG00000243147|ENST00000296102|MRPL33;MRPL33|p.S22Afs*20|1|0.23|ENSG00000243147|chr2:27774446-27774446|A/-|frameshift_variant	ENSG00000243147|ENST00000296102|MRPL33	ENSG00000243147|ENST00000296102|MRPL33	MULTI-MSMS	A375_MHC_IP_R2	2	363.95819091796875	3	363.558471	1087.65358	-0.39349	-0.00014306	-0.26136	-9.502E-05	-0.65486	-0.00023808	363.5582961948889	24.448	0.25434	25.092	24.958	25.212	0.64368					9	4	3	0	0	0	0.67787	1	8071	8071		8.9762	4.7867	1	3886700			27132	9805	19432	19590	26583	26583					0.11326344141843947
KSKPLVGSF	9	Unmodified	_KSKPLVGSF_					0	0	0		ENST00000371084.7_1_1:64095120-64095192:+|nuORF	ENST00000371084.7_1_1:64095120-64095192:+|nuORF	ENST00000371084.7_1_1:64095120-64095192:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	482.1868896484375	2	481.78711	961.559667	-0.60424	-0.00029112	0.20937	0.00010087	-0.39487	-0.00019025	481.78715887162997	32.689	0.65639	32.689	32.383	33.04	0					31	12	3	0	0	0	0.021951	1	10544	10544		103.82	35.743	1	8629400			27133	11165	19433	19591	26584	26584					0.07734948311235712
KSKPLVGSF	9	Unmodified	_KSKPLVGSF_					0	0	0		ENST00000371084.7_1_1:64095120-64095192:+|nuORF	ENST00000371084.7_1_1:64095120-64095192:+|nuORF	ENST00000371084.7_1_1:64095120-64095192:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	482.3384094238281	2	481.78711	961.559667	-0.5879	-0.00028324	0.23918	0.00011523	-0.34872	-0.00016801	481.78721165003196	31.781	0.65911	32.518	32.249	32.909	0.73692					29	12	3	0	0	0	0.019126	1	11253	11253		84.522	32.254	1	7098100			27134	11165	19433	19591	26585	26585					0.07734948311235712
KSKQEEEIKHQ	11	Unmodified	_KSKQEEEIKHQ_					0	0	0			REV__ENST00000404534.1_1_6:138026562-138026850:-|nuORF	REV__ENST00000404534.1_1_6:138026562-138026850:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	461.1285095214844	3	461.912407	1382.71539	-0.47646	-0.00022008	3.07	0.0014181	2.5935	0.001198	462.24829521176736	24.017	0.15266	24.017	23.889	24.042	0					4	2	2	0	0	0	0.99661	1	6710	6710		7.846	6.6312	1	887990	+		27135	24427	19434	19592	26586	26586					0.03934322304030502
KSKTLEFDRR	10	Unmodified	_KSKTLEFDRR_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	A375_MHC_IP_R1	1	640.7588500976562	2	640.359493	1278.70443	-0.85043	-0.00054458	-0.27303	-0.00017484	-1.1235	-0.00071942	640.3594039383742	131.96	1.4688	131.96	131.48	132.95	0					74	28	3	0	0	0	0.72078	1	50791	50791		2.9952	0	1	19829000			27136	2647	19435	19593	26587	26587					0.0762296472039452
KSKTVAFFF	9	Unmodified	_KSKTVAFFF_					0	0	0			REV__ENST00000587232.1_1_19:30104746-30106284:+|nuORF	REV__ENST00000587232.1_1_19:30104746-30106284:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	538.2020874023438	2	537.80276	1073.59097	-0.89607	-0.00048191	-0.75767	-0.00040748	-1.6537	-0.00088938	537.8024257603338	30.874	0.55492	31.593	31.266	31.821	0.71857					15	10	2	0	0	0	0.50702	1	10877	10877		19.257	19.257	1	2417800	+		27137	26397	19436	19594	26588	26588					0.057115213453243996
KSKVSDLTQAA	11	Unmodified	_KSKVSDLTQAA_					0	0	0		ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	MSMS	A375_MHC_IP_R1	1	383.26617431640625	3	383.215427	1146.62445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.422	1	27.422	26.922	27.922	0								0	0	0	0.15674	1	8317	8317		16.275	0.12544	1				27138	7932	19437	19595	26589	26589					0.05700478326571101
KSLADLFRRY	10	Unmodified	_KSLADLFRRY_					0	0	0		nc|ENSG00000138162|O95359-1|TACC2;nc|ENSG00000138162|O95359-5|TACC2;ENSG00000138162|ENST00000369005|TACC2;nc|ENSG00000138162|O95359-6|TACC2;nc|ENSG00000138162|O95359-3|TACC2;ENST00000465600.1_1_10:124008150-124013568:+|nuORF;nc|ENSG00000138162|O95359-2|TACC2	nc|ENSG00000138162|O95359-1|TACC2	nc|ENSG00000138162|O95359-1|TACC2	MULTI-MSMS	A375_MHC_IP_R1	1	423.9754333496094	3	423.575178	1267.70371	-0.22306	-9.4483E-05	0.63309	0.00026816	0.41003	0.00017368	423.5754064695165	65.924	0.55696	65.924	65.616	66.173	0					23	10	3	0	0	0	0.48194	1	23891	23891		29.281	20.037	1	2406800			27139	4967	19438	19596	26590	26590					0.08056170071358792
KSLADLFRRY	10	Unmodified	_KSLADLFRRY_					0	0	0		nc|ENSG00000138162|O95359-1|TACC2;nc|ENSG00000138162|O95359-5|TACC2;ENSG00000138162|ENST00000369005|TACC2;nc|ENSG00000138162|O95359-6|TACC2;nc|ENSG00000138162|O95359-3|TACC2;ENST00000465600.1_1_10:124008150-124013568:+|nuORF;nc|ENSG00000138162|O95359-2|TACC2	nc|ENSG00000138162|O95359-1|TACC2	nc|ENSG00000138162|O95359-1|TACC2	MULTI-MSMS	A375_MHC_IP_R2	2	423.9748840332031	3	423.575178	1267.70371	-0.1747	-7.4E-05	0.094735	4.0128E-05	-0.079968	-3.3872E-05	423.9094921665817	64.938	0.55722	65.676	65.41	65.968	0.73811					24	10	3	0	0	0	0.69875	1	24604	24604		12.856	3.6122	1	2217800			27140	4967	19438	19596	26591	26591					0.08056170071358792
KSLALLLGY	9	Unmodified	_KSLALLLGY_					0	0	0		ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	MULTI-SECPEP	A375_MHC_IP_R1	1	489.70477294921875	2	489.305136	976.595718	-0.27927	-0.00013665	0.13131	6.4252E-05	-0.14796	-7.2395E-05	489.3051754574114	99.042	1.0191	99.042	98.403	99.422	0					26	19	2	0	0	0	0.14606	1	36370	36370		55.503	0.72919	1	3858300			27141	3854	19439	19597	26592	26592					0.10648405488097978
KSLALLLGY	9	Unmodified	_KSLALLLGY_					0	0	0		ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	MULTI-MSMS	A375_MHC_IP_R2	2	489.70513916015625	2	489.305136	976.595718	-0.59941	-0.00029329	0.68448	0.00033492	0.085067	4.1624E-05	489.3053725160494	98.073	0.71288	98.833	98.385	99.098	0.75977					25	13	3	0	0	0	0.094655	1	37209	37209		51.63	3.284	1	3974600			27142	3854	19439	19597	26593	26593					0.10648405488097978
KSLALLLNY	9	Unmodified	_KSLALLLNY_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-SECPEP	A375_MHC_IP_R1	1	518.2156372070312	2	517.815867	1033.61718	-0.69356	-0.00035914	0.14813	7.6702E-05	-0.54544	-0.00028244	517.8160368062422	94.727	0.56213	94.727	94.394	94.956	0					17	10	2	0	0	0	0.087712	1	34826	34826		66.457	20.757	1	3094400			27143	8692;12043	19440	19598	26594	26594					0.10171790516801593
KSLDHQGINF	10	Unmodified	_KSLDHQGINF_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	A375_MHC_IP_R1	1	580.1986694335938	2	579.798737	1157.58292	-0.31701	-0.0001838	-0.04446	-2.5778E-05	-0.36147	-0.00020958	579.7986801078847	36.319	0.45732	36.319	36.084	36.541	0					20	8	3	0	0	0	0.011657	1	12137	12137		114.5	23.412	1	4571500			27144	7403	19441	19599	26595	26595					0.010433423579115697
KSLDHQGINF	10	Unmodified	_KSLDHQGINF_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	A375_MHC_IP_R2	2	387.2681884765625	3	386.86825	1157.58292	-0.3726	-0.00014415	0.39904	0.00015438	0.026442	1.023E-05	386.8683557887889	35.395	0.7092	36.158	35.929	36.638	0.76338					25	13	3	0	0	0	0.21482	1	12838	12838		35.996	8.867	1	11473000			27145	7403	19441	19599	26596	26596					0.010433423579115697
KSLDHQGINF	10	Unmodified	_KSLDHQGINF_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	A375_MHC_IP_R2	2	580.1986083984375	2	579.798737	1157.58292	-0.50624	-0.00029352	0.14269	8.2731E-05	-0.36355	-0.00021079	579.7987348763692	35.416	0.45484	36.179	35.98	36.435	0.76338					14	8	2	0	0	0	0.0065506	1	12850	12850		94.909	21.712	1	4919400			27146	7403	19441	19599	26597	26597					0.010433423579115697
KSLEDVVRAY	10	Unmodified	_KSLEDVVRAY_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-SECPEP	A375_MHC_IP_R1	1	590.7218017578125	2	590.322045	1178.62954	-0.34076	-0.00020116	0.06423	3.7917E-05	-0.27652	-0.00016324	590.3219793790031	54.982	0.50644	54.982	54.67	55.177	0					21	9	3	0	0	0	0.61824	1	19621	19621		59.013	26.975	1	11943000			27147	2743	19442	19600	26598	26598					0.04736782189183941
KSLEEIYLF	9	Unmodified	_KSLEEIYLF_					0	0	0		ENST00000533161.5_1_16:2012676-2014626:-|nuORF;ENSG00000140988|ENST00000343262|RPS2;ENST00000531065.5_1_16:2014195-2014626:-|nuORF;ENST00000439199.1_1_7:23530116-23530830:+|nuORF;ENST00000488906.1_1_17:45236795-45237245:-|nuORF	ENST00000533161.5_1_16:2012676-2014626:-|nuORF;ENST00000488906.1_1_17:45236795-45237245:-|nuORF	ENST00000533161.5_1_16:2012676-2014626:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	572.2317504882812	2	571.310615	1140.60668	-0.25053	-0.00014313	0.20004	0.00011429	-0.050487	-2.8844E-05	571.3106758322598	104.26	1.4721	104.26	103.83	105.3	0					60	28	3	0	0	0	0.02559	1	38268	38268		78.728	10.647	1	80235000			27148	5202;12627	19443	19601	26599	26599					0.04199763071687812
KSLEGNLETF	10	Unmodified	_KSLEGNLETF_					0	0	0		NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	569.6928100585938	2	569.292953	1136.57135	-0.3466	-0.00019732	0.075881	4.3199E-05	-0.27072	-0.00015412	569.2929734235606	59.151	0.66174	59.151	58.887	59.548	0					29	12	3	0	0	0	0.134	1	21238	21238		107.1	16.965	1	11193000			27149	4441	19444	19602	26600	26600					0.008531005438953798
KSLEGNLETF	10	Unmodified	_KSLEGNLETF_					0	0	0		NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	569.692626953125	2	569.292953	1136.57135	-0.63916	-0.00036387	-0.12565	-7.1531E-05	-0.76481	-0.0004354	569.2928146357259	58.36	0.76254	59.109	58.779	59.542	0.74894					34	14	3	0	0	0	0.011373	1	22061	22061		121.53	24.599	1	15294000			27150	4441	19444	19602	26601	26601					0.008531005438953798
KSLELHEEF	9	Unmodified	_KSLELHEEF_					0	0	0		ENSG00000164144|ENST00000353617|ARFIP1;nc|ENSG00000164144|P53367-2|ARFIP1	ENSG00000164144|ENST00000353617|ARFIP1	ENSG00000164144|ENST00000353617|ARFIP1	MULTI-SECPEP	A375_MHC_IP_R1	1	566.6875610351562	2	566.287671	1130.56079	-0.76457	-0.00043297	0.24768	0.00014026	-0.5169	-0.00029271	566.2877140588865	41.394	0.56102	41.394	41.164	41.725	0					24	10	3	0	0	0	0.046527	1	14268	14268		117.76	81.254	1	18369000			27151	6790	19445	19603	26602	26602					0.0007311788947390596
KSLELHEEF	9	Unmodified	_KSLELHEEF_					0	0	0		ENSG00000164144|ENST00000353617|ARFIP1;nc|ENSG00000164144|P53367-2|ARFIP1	ENSG00000164144|ENST00000353617|ARFIP1	ENSG00000164144|ENST00000353617|ARFIP1	MULTI-SECPEP	A375_MHC_IP_R2	2	377.62957763671875	3	377.860873	1130.56079	0.013028	4.9226E-06	0.66008	0.00024942	0.67311	0.00025434	377.8609779716616	40.582	0.81369	41.356	41.031	41.845	0.77451					38	15	4	0	0	0	0.31976	1	15049	15049		37.771	24.899	1	6490100			27152	6790	19445	19603	26603	26603					0.0007311788947390596
KSLELHEEF	9	Unmodified	_KSLELHEEF_					0	0	0		ENSG00000164144|ENST00000353617|ARFIP1;nc|ENSG00000164144|P53367-2|ARFIP1	ENSG00000164144|ENST00000353617|ARFIP1	ENSG00000164144|ENST00000353617|ARFIP1	MULTI-SECPEP	A375_MHC_IP_R2	2	566.687255859375	2	566.287671	1130.56079	-0.54007	-0.00030583	0.36003	0.00020388	-0.18004	-0.00010195	566.2877162469008	40.574	0.55919	41.349	41.133	41.692	0.77451					26	10	4	0	0	0	0.010102	1	15018	15018		168.54	120.94	1	15396000			27153	6790	19445	19603	26604	26604					0.0007311788947390596
KSLENAIEW	9	Unmodified	_KSLENAIEW_					0	0	0		nc|ENSG00000214517|Q9Y570-2|PPME1;ENSG00000214517|ENST00000328257|PPME1;nc|ENSG00000214517|Q9Y570-4|PPME1	nc|ENSG00000214517|Q9Y570-2|PPME1	nc|ENSG00000214517|Q9Y570-2|PPME1	MULTI-SECPEP	A375_MHC_IP_R1	1	545.681884765625	2	545.282389	1088.55022	-0.39385	-0.00021476	-0.12596	-6.8682E-05	-0.51981	-0.00028344	545.282233219313	71.322	0.66386	71.322	70.902	71.565	0					35	12	4	0	0	0	0.028087	1	25862	25862		96.367	13.837	1	47349000			27154	9619	19446	19604	26605	26605					0.009491352350551097
KSLGNLQRY	9	Unmodified	_KSLGNLQRY_					0	0	0			REV__ENSG00000185274|ENST00000333538|GALNT17	REV__ENSG00000185274|ENST00000333538|GALNT17	MULTI-SECPEP	A375_MHC_IP_R2	2	539.7110595703125	2	539.803823	1077.59309	-1.0887	-0.00058771	0.14385	7.7653E-05	-0.94489	-0.00051006	539.8040995108605	35.292	0.45432	36.056	35.829	36.283	0.76338					13	8	2	0	0	0	0.71341	1	12880	12880		13.042	0.80181	1	4501000	+		27155	21885	19447	19605	26606	26606					0.057399500831252226
KSLGVTTKF	9	Unmodified	_KSLGVTTKF_					0	0	0		ENST00000477938.5_1_1:219352746-219385067:+|nuORF;ENST00000474379.5_1_1:219347271-219385067:+|nuORF;nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1;ENSG00000143353|ENST00000366928|LYPLAL1;ENST00000463964.5_1_1:219347256-219385067:+|nuORF	ENST00000477938.5_1_1:219352746-219385067:+|nuORF	ENST00000477938.5_1_1:219352746-219385067:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	491.4626159667969	2	490.792392	979.570232	-0.3759	-0.00018449	-0.24467	-0.00012008	-0.62057	-0.00030457	490.79225140015524	32.049	0.56383	32.049	31.769	32.333	0					18	10	2	0	0	0	0.32966	1	10346	10346		29.437	13.288	1	11644000			27156	5373	19448	19606	26607	26607					0.07962930965641135
KSLGVTTKF	9	Unmodified	_KSLGVTTKF_					0	0	0		ENST00000477938.5_1_1:219352746-219385067:+|nuORF;ENST00000474379.5_1_1:219347271-219385067:+|nuORF;nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1;ENSG00000143353|ENST00000366928|LYPLAL1;ENST00000463964.5_1_1:219347256-219385067:+|nuORF	ENST00000477938.5_1_1:219352746-219385067:+|nuORF	ENST00000477938.5_1_1:219352746-219385067:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	491.19207763671875	2	490.792392	979.570232	-0.57239	-0.00028093	-0.32159	-0.00015783	-0.89398	-0.00043876	490.7922366518969	31.215	0.56215	31.933	31.669	32.231	0.71857					22	10	3	0	0	0	0.10502	1	11015	11015		68.76	30.584	1	10411000			27157	5373	19448	19606	26608	26608					0.07962930965641135
KSLIPSSKLF	10	Unmodified	_KSLIPSSKLF_					0	0	0			REV__ENST00000508434.1_1_5:34033255-34043308:-|nuORF	REV__ENST00000508434.1_1_5:34033255-34043308:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	561.2431030273438	2	560.342249	1118.66995	-0.61375	-0.00034391	-0.092237	-5.1684E-05	-0.70599	-0.00039559	560.3423797267361	73.79	0.61136	74.525	74.243	74.855	0.73543					20	11	3	0	0	0	0.64017	1	28022	28022		17.863	2.906	1	1911400	+		27158	25580	19449	19607	26609	26609					0.11535748579581195
KSLIPSSKLF	10	Unmodified	_KSLIPSSKLF_					0	0	0			REV__ENST00000508434.1_1_5:34033255-34043308:-|nuORF	REV__ENST00000508434.1_1_5:34033255-34043308:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	560.342249	1118.66995	-0.61375	-0.00034391	-0.092237	-5.1684E-05	-0.70599	-0.00039559	560.3423797267361	73.79	0.61136	74.525	74.243	74.855	0.73543	-0.10184	-2.3712E-05	NaN	17.863	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1911400	+		27159	25580	19449	19607							0.11535748579581195
KSLKKKKEET	10	Unmodified	_KSLKKKKEET_					0	0	0			REV__FAM217B|p.S297L|1|0.26|ENSG00000196227|chr20:59944833-59944833|C/T|missense_variant	REV__FAM217B|p.S297L|1|0.26|ENSG00000196227|chr20:59944833-59944833|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	1219.140380859375	1	1218.74161	1217.73434	-0.36802	-0.00044853	0.28171	0.00034333	-0.086314	-0.00010519	1218.7411292094273	145.22	0.26018	145.22	145.14	145.4	0					19	15	2	0	0	0	0.72669	1	55686	55686		0.35063	0.043601	1	149500	+		27160	26612	19450	19608	26610	26610					0.13417903665754238
KSLKKKKEET	10	Unmodified	_KSLKKKKEET_					0	0	0			REV__FAM217B|p.S297L|1|0.26|ENSG00000196227|chr20:59944833-59944833|C/T|missense_variant	REV__FAM217B|p.S297L|1|0.26|ENSG00000196227|chr20:59944833-59944833|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	1218.74161	1217.73434	-0.36802	-0.00044853	0.28171	0.00034333	-0.086314	-0.00010519	1218.7411292094273	145.22	0.26018	145.22	145.14	145.4	0	-0.015557	0.00068569	NaN	0.35063	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149500	+		27161	26612	19450	19608							0.13417903665754238
KSLKKKKEET	10	Unmodified	_KSLKKKKEET_					0	0	0			REV__FAM217B|p.S297L|1|0.26|ENSG00000196227|chr20:59944833-59944833|C/T|missense_variant	REV__FAM217B|p.S297L|1|0.26|ENSG00000196227|chr20:59944833-59944833|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	1218.74161	1217.73434	0.4049	0.00049347	-0.73436	-0.000895	-0.32946	-0.00040153	1218.740675990869	145.23	0.24374	145.25	145.17	145.41	0.021408	0.015557	-0.00055264	NaN	0.35063	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195280	+		27162	26612	19450	19608							0.13417903665754238
KSLLDSTRFER	11	Unmodified	_KSLLDSTRFER_					0	0	0		ENST00000395694.6_2_3:48476231-48476282:-|nuORF	ENST00000395694.6_2_3:48476231-48476282:-|nuORF	ENST00000395694.6_2_3:48476231-48476282:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	451.6477355957031	3	451.249131	1350.72556	-0.079626	-3.5931E-05	1.2356	0.00055755	1.1559	0.00052161	451.2479923979055	51.187	0.66044	51.187	50.764	51.424	0					31	12	4	0	0	0	0.73502	1	18172	18172		4.1166	0	1	2900600			27163	11474	19451	19609	26611	26611					0.06422930029293639
KSLLGKDVLF	10	Unmodified	_KSLLGKDVLF_					0	0	0		nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1;ENSG00000170950|ENST00000304801|PGK2	nc|ENSG00000102144|P00558-2|PGK1	nc|ENSG00000102144|P00558-2|PGK1	MULTI-SECPEP	A375_MHC_IP_R1	1	560.7418823242188	2	560.342249	1118.66995	-0.48294	-0.00027061	-0.052815	-2.9594E-05	-0.53576	-0.00030021	560.3421576085256	74.729	0.50774	74.729	74.502	75.009	0					17	9	3	0	0	0	0.79692	1	27248	27248		35.996	3.3793	1	2374000			27164	2359	19452	19610	26612	26612					0.11535748579581195
KSLNIFGSSW	10	Unmodified	_KSLNIFGSSW_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4;nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	ENSG00000105929|ENST00000310018|ATP6V0A4;nc|ENSG00000033627|Q93050-1|ATP6V0A1	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-SECPEP	A375_MHC_IP_R1	1	570.1979370117188	2	569.798206	1137.58186	-0.20825	-0.00011866	0.57757	0.0003291	0.36932	0.00021044	569.7983684849622	97.049	0.75945	97.049	96.68	97.44	0					27	14	3	0	0	0	0.011428	1	35637	35637		139.78	81.103	1	3128800			27165	2650;1125	19453	19611	26613	26613					0.018571279890011283
KSLNIFGSSW	10	Unmodified	_KSLNIFGSSW_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4;nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	ENSG00000105929|ENST00000310018|ATP6V0A4;nc|ENSG00000033627|Q93050-1|ATP6V0A1	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-SECPEP	A375_MHC_IP_R2	2	570.1981811523438	2	569.798206	1137.58186	-0.31133	-0.00017739	0.25	0.00014245	-0.061327	-3.4944E-05	569.798009435161	96.166	0.81279	96.917	96.5	97.313	0.75044					29	15	3	0	0	0	0.10905	1	36496	36496		75.571	49.302	1	2644500			27166	2650;1125	19453	19611	26614	26614					0.018571279890011283
KSLPASLSF	9	Unmodified	_KSLPASLSF_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-MSMS	A375_MHC_IP_R1	1	475.67138671875	2	475.271293	948.528032	-0.13245	-6.295E-05	0.096911	4.6059E-05	-0.03554	-1.6891E-05	475.27129008020944	69.198	0.96325	69.198	68.819	69.782	0					42	18	3	0	0	0	0.024574	1	25042	25042		79.596	11.516	1	24800000			27167	8324	19454	19612	26615	26615					0.05170955557287016
KSLPASLSF	9	Unmodified	_KSLPASLSF_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-MSMS	A375_MHC_IP_R2	2	949.9358520507812	1	949.535309	948.528032	-0.055056	-5.2278E-05	0.43032	0.0004086	0.37526	0.00035632	949.5358315848404	68.322	0.35423	69.057	68.867	69.221	0.73511					9	6	2	0	0	0	0.59266	1	25938	25938		15.248	4.4246	1	1379300			27168	8324	19454	19612	26616	26616					0.05170955557287016
KSLPASLSF	9	Unmodified	_KSLPASLSF_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-SECPEP	A375_MHC_IP_R2	2	475.6710510253906	2	475.271293	948.528032	-0.4257	-0.00020232	0.30118	0.00014314	-0.12452	-5.9181E-05	475.2713351524865	68.359	0.96397	69.094	68.662	69.626	0.73511					55	18	4	0	0	0	0.05217	1	25835	25835		70.332	2.2513	1	25627000			27169	8324	19454	19612	26617	26617					0.05170955557287016
KSLPASLSF	9	Unmodified	_KSLPASLSF_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-MATCH	A375_MHC_IP_R1	1		1	949.535309	948.528032	0.41051	0.00038979	-0.1869	-0.00017746	0.22361	0.00021233	949.5353298781632	69.183	0.40713	69.183	68.969	69.377	0	0.063086	-0.00036685	NaN	15.248	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1453500			27170	8324	19454	19612							0.05170955557287016
KSLPERRFF	9	Unmodified	_KSLPERRFF_					0	0	0		ENSG00000115998|ENST00000264434|C2orf42	ENSG00000115998|ENST00000264434|C2orf42	ENSG00000115998|ENST00000264434|C2orf42	MULTI-MSMS	A375_MHC_IP_R2	2	394.27703857421875	3	393.892619	1178.65603	-0.23284	-9.1714E-05	-0.28628	-0.00011276	-0.51912	-0.00020448	393.8923229696375	32.789	0.30336	33.526	33.317	33.62	0.73691					10	5	2	0	0	0	0.54799	1	11685	11685		17.443	4.5867	1	1257500			27171	3358	19455	19613	26618	26618					0.07384515871149233
KSLPFPSRF	9	Unmodified	_KSLPFPSRF_					0	0	0		ENST00000403681.6_2_12:66218404-66218671:+|nuORF	ENST00000403681.6_2_12:66218404-66218671:+|nuORF	ENST00000403681.6_2_12:66218404-66218671:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	540.20556640625	2	539.805834	1077.59712	-0.5847	-0.00031562	-0.26188	-0.00014136	-0.84657	-0.00045699	539.8060426003065	57.101	0.56133	57.101	56.701	57.263	0					22	10	3	0	0	0	0.41439	1	20470	20470		40.725	27.11	1	4075000			27172	11574	19456	19614	26619	26619					0.06142039576843672
KSLPFPSRF	9	Unmodified	_KSLPFPSRF_					0	0	0		ENST00000403681.6_2_12:66218404-66218671:+|nuORF	ENST00000403681.6_2_12:66218404-66218671:+|nuORF	ENST00000403681.6_2_12:66218404-66218671:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	540.2063598632812	2	539.805834	1077.59712	-1.0807	-0.00058338	0.52446	0.00028311	-0.55626	-0.00030027	539.8062454623828	56.075	0.51031	56.825	56.591	57.101	0.75015					16	9	2	0	0	0	0.29872	1	21187	21187		44.392	29.143	1	2019200			27173	11574	19456	19614	26620	26620					0.06142039576843672
KSLPGAEDY	9	Unmodified	_KSLPGAEDY_					0	0	0		ENSG00000170275|ENST00000320954|CRTAP	ENSG00000170275|ENST00000320954|CRTAP	ENSG00000170275|ENST00000320954|CRTAP	MULTI-SECPEP	A375_MHC_IP_R1	1	490.6394958496094	2	490.24019	978.465826	-0.60776	-0.00029795	0.0082739	4.0562E-06	-0.59948	-0.00029389	490.2401466868873	30.628	0.45528	30.628	30.453	30.908	0					15	8	2	0	0	0	0.11849	1	9766	9766		53.404	35.258	1	3188700			27174	7488	19457	19615	26621	26621					-0.0242681558172535
KSLPGAEDY	9	Unmodified	_KSLPGAEDY_					0	0	0		ENSG00000170275|ENST00000320954|CRTAP	ENSG00000170275|ENST00000320954|CRTAP	ENSG00000170275|ENST00000320954|CRTAP	MULTI-MATCH	A375_MHC_IP_R2	2		2	490.24019	978.465826	-0.74685	-0.00036614	0.3286	0.00016109	-0.41825	-0.00020504	490.2402504429429	30.014	0.45658	30.713	30.537	30.993	0.69872	0.042359	0.00014754	NaN	53.404	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2174400			27175	7488	19457	19615							-0.0242681558172535
KSLPPPIITW	10	Unmodified	_KSLPPPIITW_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant;HMCN1|p.P2051Lfs*3|1|0.45|ENSG00000143341|chr1:186039851-186039861|CTGTTTCTAGT/-|frameshift_variant;ENST00000485744.5_1_1:185931700-185962449:+|nuORF;nc|ENSG00000143341|Q96RW7-3|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	A375_MHC_IP_R1	1	576.7447509765625	2	576.344792	1150.67503	-0.08622	-4.9692E-05	0.083552	4.8155E-05	-0.002668	-1.5377E-06	576.3447374290336	97.185	1.6233	97.185	96.427	98.05	0					73	31	3	0	0	0	0.1863	2	35577	35493;35577		49.742	32.629	1	4654400			27176	5371	19458	19616	26622;26623	26623					0.10572052442216773
KSLPPPIITW	10	Unmodified	_KSLPPPIITW_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant;HMCN1|p.P2051Lfs*3|1|0.45|ENSG00000143341|chr1:186039851-186039861|CTGTTTCTAGT/-|frameshift_variant;ENST00000485744.5_1_1:185931700-185962449:+|nuORF;nc|ENSG00000143341|Q96RW7-3|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	A375_MHC_IP_R2	2	576.2913818359375	2	576.344792	1150.67503	-0.19632	-0.00011315	-0.011502	-6.629E-06	-0.20783	-0.00011978	576.3447065257144	96.316	1.6724	97.066	96.195	97.867	0.75045					57	32	2	0	0	0	0.034789	1	36455	36455		73.196	44.115	1	4714900			27177	5371	19458	19616	26624	26624					0.10572052442216773
KSLRFWGSVGP	11	Unmodified	_KSLRFWGSVGP_					0	0	0		nc|ENSG00000167925|Q8N2G8-3|GHDC;ENSG00000167925|ENST00000587427|GHDC;ENST00000414034.7_2_17:40341723-40342334:-|nuORF	nc|ENSG00000167925|Q8N2G8-3|GHDC	nc|ENSG00000167925|Q8N2G8-3|GHDC	MULTI-MSMS	A375_MHC_IP_R2	2	412.2955627441406	3	411.89614	1232.66659	-0.24948	-0.00010276	-0.29676	-0.00012223	-0.54624	-0.00022499	411.8960454339945	18.849	0.16035	19.452	19.423	19.583	0.60308					9	4	3	0	0	0	0.72801	1	5671	5671		5.8681	0.46543	1	28296000			27178	7237	19459	19617	26625	26625					0.059564985255974534
KSLRSLNNF	9	Unmodified	_KSLRSLNNF_					0	0	0		ENSG00000136875|ENST00000374198|PRPF4;nc|ENSG00000136875|O43172|PRPF4	ENSG00000136875|ENST00000374198|PRPF4	ENSG00000136875|ENST00000374198|PRPF4	MULTI-SECPEP	A375_MHC_IP_R1	1	360.6050109863281	3	360.204974	1077.59309	0.17791	6.4085E-05	-0.31522	-0.00011354	-0.13731	-4.9459E-05	360.2048526625141	31.706	0.66112	31.706	31.414	32.075	0					33	12	5	0	0	0	0.47674	1	10159	10159		28.234	14.015	1	4386000			27179	4835	19460	19618	26626	26626					0.057399500831252226
KSLRSLNNF	9	Unmodified	_KSLRSLNNF_					0	0	0		ENSG00000136875|ENST00000374198|PRPF4;nc|ENSG00000136875|O43172|PRPF4	ENSG00000136875|ENST00000374198|PRPF4	ENSG00000136875|ENST00000374198|PRPF4	MULTI-SECPEP	A375_MHC_IP_R2	2	360.60491943359375	3	360.204974	1077.59309	-0.22584	-8.1348E-05	-0.1581	-5.6949E-05	-0.38394	-0.0001383	360.20487406526087	30.824	0.40259	31.542	31.367	31.77	0.71857					21	7	3	0	0	0	0.47674	1	10865	10865		28.234	18.083	1	6161700			27180	4835	19460	19618	26627	26627					0.057399500831252226
KSLRSLNNF	9	Unmodified	_KSLRSLNNF_					0	0	0		ENSG00000136875|ENST00000374198|PRPF4;nc|ENSG00000136875|O43172|PRPF4	ENSG00000136875|ENST00000374198|PRPF4	ENSG00000136875|ENST00000374198|PRPF4	MULTI-SECPEP	A375_MHC_IP_R2	2	540.2035522460938	2	539.803823	1077.59309	-0.87704	-0.00047343	0.61692	0.00033301	-0.26012	-0.00014041	539.8041421132899	30.858	0.35172	31.577	31.367	31.719	0.71857					13	6	3	0	0	0	0.75519	1	10916	10916		6.6304	2.1015	1	2797800			27181	4835	19460	19618	26628	26628					0.057399500831252226
KSLRSLNNF	9	Unmodified	_KSLRSLNNF_					0	0	0		ENSG00000136875|ENST00000374198|PRPF4;nc|ENSG00000136875|O43172|PRPF4	ENSG00000136875|ENST00000374198|PRPF4	ENSG00000136875|ENST00000374198|PRPF4	MULTI-MATCH	A375_MHC_IP_R1	1		2	539.803823	1077.59309	-0.59719	-0.00032237	-0.57821	-0.00031212	-1.1754	-0.00063449	539.8031026815586	31.72	0.55739	31.72	31.312	31.87	0	0.071504	-0.0010734	NaN	6.6304	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1668000			27182	4835	19460	19618							0.057399500831252226
KSLSEIRQL	9	Unmodified	_KSLSEIRQL_					0	0	0		ENSG00000137831|ENST00000322954|UACA;nc|ENSG00000137831|Q9BZF9-2|UACA	ENSG00000137831|ENST00000322954|UACA	ENSG00000137831|ENST00000322954|UACA	MULTI-MSMS	A375_MHC_IP_R1	1	358.9485168457031	3	358.548629	1072.62406	0.13904	4.9854E-05	0.069876	2.5054E-05	0.20892	7.4908E-05	358.5484427430297	33.589	0.35461	33.589	33.393	33.748	0					14	6	3	0	0	0	0.16286	1	11006	11006		40.725	5.7928	1	3127500			27183	4925	19461	19619	26629	26629					0.09065103397369967
KSLSEIRQL	9	Unmodified	_KSLSEIRQL_					0	0	0		ENSG00000137831|ENST00000322954|UACA;nc|ENSG00000137831|Q9BZF9-2|UACA	ENSG00000137831|ENST00000322954|UACA	ENSG00000137831|ENST00000322954|UACA	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	358.548629	1072.62406	-0.27056	-9.7009E-05	0.25491	9.1399E-05	-0.015647	-5.6101E-06	358.5486150724548	32.799	0.40582	33.536	33.265	33.671	0.73691	-0.026568	6.7028E-05	NaN	40.725	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2681200			27184	4925	19461	19619							0.09065103397369967
KSLSEYNNF	9	Unmodified	_KSLSEYNNF_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	A375_MHC_IP_R1	1	551.6636352539062	2	551.264196	1100.51384	-0.86305	-0.00047577	0.45924	0.00025316	-0.40381	-0.00022261	551.2644240227504	41.596	0.61474	41.596	41.317	41.932	0					25	11	3	0	0	0	0.0098085	1	14359	14359		114.2	55.523	1	12446000			27185	8339	19462	19620	26630	26630					-0.03239741661673179
KSLSEYNNF	9	Unmodified	_KSLSEYNNF_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	A375_MHC_IP_R2	2	551.6641235351562	2	551.264196	1100.51384	-0.99924	-0.00055085	0.021179	1.1675E-05	-0.97806	-0.00053917	551.2642367172813	40.873	0.50922	41.647	41.386	41.895	0.77451					28	9	4	0	0	0	0.0099737	1	15121	15121		96.367	33.794	1	10157000			27186	8339	19462	19620	26631	26631					-0.03239741661673179
KSLSLIRW	8	Unmodified	_KSLSLIRW_					0	0	0		chr6:111572983-111573521|375|18.15|0.95|4.25|-|0|TRAF3IP2,TRAF3IP2|1;chr6:111572983-111573129|174|16.05|0.47|5.1|-|0|TRAF3IP2,TRAF3IP2|1	chr6:111572983-111573521|375|18.15|0.95|4.25|-|0|TRAF3IP2,TRAF3IP2|1	chr6:111572983-111573521|375|18.15|0.95|4.25|-|0|TRAF3IP2,TRAF3IP2|1	MULTI-SECPEP	A375_MHC_IP_R1	1	502.20849609375	2	501.808377	1001.6022	-0.34269	-0.00017196	0.095948	4.8148E-05	-0.24674	-0.00012382	501.8083785714793	53.56	0.50937	53.56	53.352	53.861	0					19	9	3	0	0	0	0.64713	1	19079	19079		43.858	0	1	6270300			27187	490	19463	19621	26632	26632					0.10146343439464545
KSLSPHELK	9	Unmodified	_KSLSPHELK_					0	0	0		nc|ENSG00000130714|Q9Y6A1-4|POMT1;nc|ENSG00000130714|Q9Y6A1-3|POMT1;ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1	nc|ENSG00000130714|Q9Y6A1-4|POMT1	nc|ENSG00000130714|Q9Y6A1-4|POMT1	MULTI-SECPEP	A375_MHC_IP_R1	1	520.1542358398438	2	519.800749	1037.58694	-0.44709	-0.0002324	0.54946	0.00028561	0.10236	5.3209E-05	519.8009592150061	79.426	0.51462	79.426	79.161	79.676	0					12	9	2	0	0	0	0.20645	1	29065	29065		56.177	20.05	1	980810			27188	4270	19464	19622	26633	26633					0.06965431851608628
KSMFAIGF	8	Unmodified	_KSMFAIGF_					0	0	0		ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	MULTI-SECPEP	A375_MHC_IP_R1	1	451.1358947753906	2	450.736031	899.45751	-0.055685	-2.5099E-05	0.23729	0.00010695	0.1816	8.1854E-05	450.73607106357883	97.096	0.65848	97.096	96.781	97.44	0					24	12	2	0	0	0	0.46955	1	35640	35640		65.235	16.889	1	8043100			27189	5357	19465	19623	26634	26634					0.0037595896797029127
KSMFAIGF	8	Unmodified	_KSMFAIGF_					0	0	0		ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	MULTI-MSMS	A375_MHC_IP_R2	2	450.62506103515625	2	450.736031	899.45751	-0.2734	-0.00012323	0.43295	0.00019515	0.15955	7.1914E-05	450.73614339392196	96.159	0.60938	96.909	96.602	97.211	0.75044					29	11	3	0	0	0	0.33238	1	36495	36495		56.177	16.22	1	6861100			27190	5357	19465	19623	26635	26635					0.0037595896797029127
KSMFQRTTY	9	Oxidation (M)	_KSM(Oxidation (M))FQRTTY_		KSM(1)FQRTTY		KSM(53)FQRTTY	0	0	1		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-MSMS	A375_MHC_IP_R1	1	589.68701171875	2	589.287148	1176.55974	-0.39555	-0.00023309	-0.021062	-1.2411E-05	-0.41661	-0.00024551	589.2872109397498	19.67	0.45789	19.67	19.471	19.928	0					12	8	2	0	0	0	0.085252	1	4938	4938		53.317	29.296	1	3308900			27191	2123	19466	19624	26636	26636		79			-0.021474197510769955
KSMFQRTTY	9	Oxidation (M)	_KSM(Oxidation (M))FQRTTY_		KSM(1)FQRTTY		KSM(65)FQRTTY	0	0	1		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-MSMS	A375_MHC_IP_R1	1	589.68701171875	2	589.287148	1176.55974	0.021106	1.2437E-05	-0.45169	-0.00026618	-0.43059	-0.00025374	589.2869213494848	21.988	0.50858	21.988	21.808	22.317	0					18	9	3	0	0	0	0.048392	1	5857	5857		64.927	38.659	1	5000400			27192	2123	19466	19624	26637	26637		79			-0.021474197510769955
KSMFQRTTY	9	Oxidation (M)	_KSM(Oxidation (M))FQRTTY_		KSM(1)FQRTTY		KSM(43)FQRTTY	0	0	1		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-SECPEP	A375_MHC_IP_R1	1	393.5941467285156	3	393.193858	1176.55974	0.40206	0.00015809	-0.66174	-0.00026019	-0.25968	-0.0001021	393.1937117896435	21.981	0.76344	21.981	21.656	22.419	0					34	14	3	0	0	0	0.42978	1	5840	5840		42.835	29.963	1	7491400			27193	2123	19466	19624	26638	26638		79			-0.021474197510769955
KSMFQRTTY	9	Oxidation (M)	_KSM(Oxidation (M))FQRTTY_		KSM(1)FQRTTY		KSM(65)FQRTTY	0	0	1		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-MSMS	A375_MHC_IP_R2	2	589.6864624023438	2	589.287148	1176.55974	-0.90465	-0.0005331	-0.03055	-1.8003E-05	-0.9352	-0.0005511	589.287080251437	21.511	0.5612	22.13	21.928	22.49	0.61932					23	10	3	0	0	0	0.048392	1	6776	6776		64.927	35.086	1	3739400			27194	2123	19466	19624	26639	26639		79			-0.021474197510769955
KSMFQRTTY	9	Unmodified	_KSMFQRTTY_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-MSMS	A375_MHC_IP_R1	1	581.6896362304688	2	581.289691	1160.56483	-0.44295	-0.00025748	0.15727	9.1421E-05	-0.28568	-0.00016606	581.2898232707064	27.981	0.30196	27.981	27.786	28.088	0					9	5	2	0	0	0	0.095851	1	8590	8590		51.415	29.878	1	4917900			27195	2123	19466	19625	26640	26640					-0.009031158884681645
KSMFQRTTY	9	Unmodified	_KSMFQRTTY_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-SECPEP	A375_MHC_IP_R2	2	581.689453125	2	581.289691	1160.56483	-0.29803	-0.00017324	-0.026406	-1.5349E-05	-0.32444	-0.00018859	581.2897296352713	27.241	0.3572	27.92	27.741	28.098	0.67857					10	6	2	0	0	0	0.41439	1	9320	9320		47.732	20.848	1	5802500			27196	2123	19466	19625	26641	26641					-0.009031158884681645
KSMFTQALNL	10	Unmodified	_KSMFTQALNL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	A375_MHC_IP_R1	1	384.9400939941406	3	384.874236	1151.60088	-0.011837	-4.5557E-06	0.72555	0.00027925	0.71372	0.00027469	384.87448448694965	23.713	0.30475	23.713	23.584	23.889	0					10	5	3	0	0	0	0.8866	1	6574	6574		9.2438	0.17622	1	6935800			27197	5295	19467	19626	26642	26642					0.031143412884148347
KSMKVVKLF	9	Unmodified	_KSMKVVKLF_					0	0	0		ENST00000496641.1_1_7:140710217-140710433:-|nuORF;ENSG00000090263|ENST00000324787|MRPS33	ENST00000496641.1_1_7:140710217-140710433:-|nuORF	ENST00000496641.1_1_7:140710217-140710433:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	360.6094665527344	3	360.559701	1078.65727	-0.15927	-5.7428E-05	-0.18643	-6.7218E-05	-0.3457	-0.00012465	360.55960772206544	41.262	0.50758	41.262	41.013	41.521	0					16	9	3	0	0	0	0.26169	2	14255	14238;14255		25.997	15.682	1	3347000			27198	1947	19468	19627	26643;26644	26644					0.1210901391571042
KSMKVVKLF	9	Unmodified	_KSMKVVKLF_					0	0	0		ENST00000496641.1_1_7:140710217-140710433:-|nuORF;ENSG00000090263|ENST00000324787|MRPS33	ENST00000496641.1_1_7:140710217-140710433:-|nuORF	ENST00000496641.1_1_7:140710217-140710433:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	360.95953369140625	3	360.559701	1078.65727	-0.25223	-9.0943E-05	-0.010346	-3.7302E-06	-0.26257	-9.4674E-05	360.55965452748364	40.177	0.40571	40.951	40.777	41.183	0.77451					19	7	3	0	0	0	0.024574	1	14878	14878		64.927	36.432	1	6221200			27199	1947	19468	19627	26645	26645					0.1210901391571042
KSNAPIEPD	9	Unmodified	_KSNAPIEPD_					0	0	0			REV__CSMD3|p.G2937E|1|0.29|ENSG00000164796|chr8:112291674-112291674|C/T|missense_variant	REV__CSMD3|p.G2937E|1|0.29|ENSG00000164796|chr8:112291674-112291674|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	969.800048828125	1	970.484002	969.476725	-0.051567	-5.0045E-05	4.0755	0.0039552	4.0239	0.0039051	970.487982032881	123.23	0.45332	123.61	123.48	123.93	0.3766					11	8	2	0	0	0	0.56537	1	47410	47410		12.241	4.3305	1	19254000	+		27200	15924	19469	19628	26646	26646					-0.009234132074311674
KSNELFTTF	9	Unmodified	_KSNELFTTF_					0	0	0		nc|ENSG00000086712|Q9NUQ3-2|TXLNG;ENSG00000086712|ENST00000380122|TXLNG	nc|ENSG00000086712|Q9NUQ3-2|TXLNG	nc|ENSG00000086712|Q9NUQ3-2|TXLNG	MULTI-SECPEP	A375_MHC_IP_R1	1	544.1763916015625	2	543.776939	1085.53933	-0.61348	-0.0003336	0.065642	3.5695E-05	-0.54784	-0.0002979	543.776942972766	76.034	1.1637	76.034	75.664	76.827	0					51	22	4	0	0	0	0.028087	1	27694	27694		86.332	48.156	1	13542000			27201	1844	19470	19629	26647	26647					-2.2671392343909247E-05
KSNELFTTF	9	Unmodified	_KSNELFTTF_					0	0	0		nc|ENSG00000086712|Q9NUQ3-2|TXLNG;ENSG00000086712|ENST00000380122|TXLNG	nc|ENSG00000086712|Q9NUQ3-2|TXLNG	nc|ENSG00000086712|Q9NUQ3-2|TXLNG	MULTI-SECPEP	A375_MHC_IP_R2	2	543.415771484375	2	543.776939	1085.53933	-0.85472	-0.00046478	-0.22848	-0.00012424	-1.0832	-0.00058902	543.7768527373588	75.155	1.0165	75.892	75.621	76.637	0.73752					45	19	3	0	0	0	0.0575	1	28575	28575		86.332	21.097	1	13558000			27202	1844	19470	19629	26648	26648					-2.2671392343909247E-05
KSNQVRGLY	9	Unmodified	_KSNQVRGLY_					0	0	0		ENSG00000165516|ENST00000298307|KLHDC2;nc|ENSG00000165516|Q9Y2U9-2|KLHDC2	ENSG00000165516|ENST00000298307|KLHDC2	ENSG00000165516|ENST00000298307|KLHDC2	MULTI-MSMS	A375_MHC_IP_R2	2	532.6924438476562	2	532.795998	1063.57744	-0.62952	-0.0003354	1.4747	0.00078573	0.84521	0.00045032	532.79690886304	92.142	1.0638	92.881	92.227	93.291	0.73902					29	20	2	0	0	0	0.69674	1	35045	35045		7.2892	0.56607	1	1215800			27203	6962	19471	19630	26649	26649					0.04819663566104282
KSNSDIAY	8	Unmodified	_KSNSDIAY_					0	0	0			REV__tr|U7SKT8|U7SKT8_FUSNUReversetranscriptasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01930PE=4SV=1	REV__tr|U7SKT8|U7SKT8_FUSNUReversetranscriptasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01930PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	449.6192626953125	2	449.219257	896.423961	-0.054489	-2.4477E-05	-0.24867	-0.00011171	-0.30316	-0.00013619	449.21909892203706	43.562	0.81264	43.562	43.197	44.01	0					18	15	2	0	0	0	0.70206	1	15173	15173		34.102	8.7031	1	2267500	+		27204	28258	19472	19631	26650	26650					-0.028393712702495577
KSPLLKQF	8	Unmodified	_KSPLLKQF_					0	0	0			REV__ENSG00000174225|ENST00000450049|ARL13A	REV__ENSG00000174225|ENST00000450049|ARL13A	MSMS	A375_MHC_IP_R1	1	480.8936462402344	2	480.797478	959.580402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.709	1	33.709	33.209	34.209	0								0	0	0	0.16876	1	11034	11034		8.5933	2.8329	1		+		27205	21272	19473	19632	26651	26651					0.0989953869089959
KSPLLQLSHI	10	Unmodified	_KSPLLQLSHI_					0	0	0		SEC63|p.P388S|1|0.32|ENSG00000025796|chr6:107902891-107902891|G/A|missense_variant	SEC63|p.P388S|1|0.32|ENSG00000025796|chr6:107902891-107902891|G/A|missense_variant	SEC63|p.P388S|1|0.32|ENSG00000025796|chr6:107902891-107902891|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	379.63262939453125	3	379.232641	1134.67609	0.28483	0.00010802	-0.0096772	-3.6699E-06	0.27515	0.00010435	379.2325577548583	28.313	0.30211	28.313	28.138	28.44	0					11	5	3	0	0	0	0.70027	1	8752	8752		12.175	5.9829	1	4348600			27206	29128	19474	19633	26652	26652					0.11414266811129892
KSQDFGNLF	9	Unmodified	_KSQDFGNLF_					0	0	0		ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B	ENSG00000077097|ENST00000264331|TOP2B	ENSG00000077097|ENST00000264331|TOP2B	MULTI-MSMS	A375_MHC_IP_R1	1	528.6610717773438	2	528.261456	1054.50836	-0.5273	-0.00027855	-0.34128	-0.00018028	-0.86857	-0.00045883	528.2614622878028	75.433	0.65431	75.433	75.16	75.815	0					29	12	3	0	0	0	0.032333	1	27452	27452		72.968	8.7316	1	8584600			27207	1646	19475	19634	26653	26653					-0.016714204534764576
KSQDFGNLF	9	Unmodified	_KSQDFGNLF_					0	0	0		ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B	ENSG00000077097|ENST00000264331|TOP2B	ENSG00000077097|ENST00000264331|TOP2B	MULTI-SECPEP	A375_MHC_IP_R2	2	528.6609497070312	2	528.261456	1054.50836	-0.57624	-0.00030441	-0.6647	-0.00035114	-1.2409	-0.00065554	528.2613069448726	74.635	0.76291	75.373	74.958	75.721	0.73751					37	14	4	0	0	0	0.03109	1	28318	28318		92.653	28.417	1	11683000			27208	1646	19475	19634	26654	26654					-0.016714204534764576
KSQEVYENF	9	Unmodified	_KSQEVYENF_					0	0	0		nc|ENSG00000127511|O75182|SIN3B;ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182-3|SIN3B	nc|ENSG00000127511|O75182|SIN3B	nc|ENSG00000127511|O75182|SIN3B	MULTI-MSMS	A375_MHC_IP_R1	1	572.1957397460938	2	572.269478	1142.5244	-0.13116	-7.5057E-05	0.18172	0.000104	0.050567	2.8938E-05	572.269159602643	40.602	0.2541	40.602	40.458	40.712	0					6	4	2	0	0	0	0.34064	1	13963	13963		27.629	0	1	1132300			27209	4094	19476	19635	26655	26655					-0.041157590072543826
KSQEVYENF	9	Unmodified	_KSQEVYENF_					0	0	0		nc|ENSG00000127511|O75182|SIN3B;ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182-3|SIN3B	nc|ENSG00000127511|O75182|SIN3B	nc|ENSG00000127511|O75182|SIN3B	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	572.269478	1142.5244	-0.31452	-0.00017999	0.21712	0.00012425	-0.0974	-5.5739E-05	572.2695957559122	39.94	0.45731	40.714	40.422	40.879	0.77451	0.055981	2.3692E-05	NaN	27.629	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1329100			27210	4094	19476	19635							-0.041157590072543826
KSQLCHSLLC	10	Unmodified	_KSQLCHSLLC_					0	0	0		ENST00000590054.5_1_19:11457292-11462950:+|nuORF	ENST00000590054.5_1_19:11457292-11462950:+|nuORF	ENST00000590054.5_1_19:11457292-11462950:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	566.3363037109375	2	566.286094	1130.55763	-0.92196	-0.0005221	2.6993	0.0015286	1.7773	0.0010065	566.788603324309	53.628	0.45967	54.379	54.046	54.505	0.75105					12	8	2	0	0	0	0.66308	1	20264	20264		16.149	5.3252	1	1627500			27211	13780	19477	19636	26656	26656					-0.002421717605102458
KSQLCHSLLC	10	Unmodified	_KSQLCHSLLC_					0	0	0		ENST00000590054.5_1_19:11457292-11462950:+|nuORF	ENST00000590054.5_1_19:11457292-11462950:+|nuORF	ENST00000590054.5_1_19:11457292-11462950:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	566.286094	1130.55763	-0.25776	-0.00014597	1.8143	0.0010274	1.5566	0.00088146	566.2873802138788	54.358	0.55706	54.358	54.163	54.72	0	-0.010347	-0.00055158	NaN	16.149	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1186000			27212	13780	19477	19636							-0.002421717605102458
KSRFDLEKY	9	Unmodified	_KSRFDLEKY_					0	0	0		nc|ENSG00000156026|Q8NE86-3|MCU;nc|ENSG00000156026|Q8NE86-2|MCU;ENSG00000156026|ENST00000373053|MCU	nc|ENSG00000156026|Q8NE86-3|MCU	nc|ENSG00000156026|Q8NE86-3|MCU	MULTI-MSMS	A375_MHC_IP_R2	2	396.2776794433594	3	395.880267	1184.61897	-0.43869	-0.00017367	-3.1486	-0.0012465	-3.5873	-0.0014201	395.8791191459462	23.338	0.7088	23.968	23.726	24.435	0.63014					21	13	2	0	0	0	0.66474	1	7568	7568		10.151	0	1	5213100			27213	6170	19478	19637	26657	26657					0.034047995347464166
KSRGIGTVTF	10	Unmodified	_KSRGIGTVTF_					0	0	0		HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant;nc|ENSG00000099783|P52272-2|HNRNPM;ENSG00000099783|ENST00000325495|HNRNPM	HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant	HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	356.2732238769531	3	355.873224	1064.59784	-0.02016	-7.1745E-06	0.088487	3.149E-05	0.068327	2.4316E-05	355.87323029964335	38.552	0.6139	38.552	38.268	38.882	0					27	11	4	0	0	0	0.54492	1	13074	13074		17.049	0.89947	1	29574000			27214	2081	19479	19638	26658	26658					0.06812834225888764
KSRGIGTVTF	10	Unmodified	_KSRGIGTVTF_					0	0	0		HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant;nc|ENSG00000099783|P52272-2|HNRNPM;ENSG00000099783|ENST00000325495|HNRNPM	HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant	HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	533.7057495117188	2	533.306198	1064.59784	-0.67412	-0.00035951	0.29712	0.00015846	-0.377	-0.00020106	533.3063024488284	38.566	0.46121	38.566	38.319	38.78	0					19	8	3	0	0	0	0.49165	1	13078	13078		49.527	15.425	1	9765000			27215	2081	19479	19638	26659	26659					0.06812834225888764
KSRGIGTVTF	10	Unmodified	_KSRGIGTVTF_					0	0	0		HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant;nc|ENSG00000099783|P52272-2|HNRNPM;ENSG00000099783|ENST00000325495|HNRNPM	HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant	HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	356.27301025390625	3	355.873224	1064.59784	-0.50987	-0.00018145	0.23531	8.3742E-05	-0.27455	-9.7706E-05	355.87324215885076	37.587	0.51103	38.358	38.071	38.582	0.77126					29	9	5	0	0	0	0.44858	2	13723	13723;13763		32.898	10.939	1	23426000			27216	2081	19479	19638	26660;26661	26660					0.06812834225888764
KSRGIGTVTF	10	Unmodified	_KSRGIGTVTF_					0	0	0		HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant;nc|ENSG00000099783|P52272-2|HNRNPM;ENSG00000099783|ENST00000325495|HNRNPM	HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant	HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	533.705810546875	2	533.306198	1064.59784	-1.0387	-0.00055395	0.40256	0.00021469	-0.63614	-0.00033926	533.3063640740618	37.564	0.56203	38.335	38.07	38.632	0.7709					21	10	3	0	0	0	0.4546	1	13743	13743		43.982	17.098	1	9165900			27217	2081	19479	19638	26662	26662					0.06812834225888764
KSRKRQEPPL	10	Unmodified	_KSRKRQEPPL_					0	0	0			REV__nc|ENSG00000143375|Q9P2M7-2|CGN	REV__nc|ENSG00000143375|Q9P2M7-2|CGN	MULTI-SECPEP	A375_MHC_IP_R1	1	620.2695922851562	2	619.870028	1237.7255	-0.62399	-0.00038679	-0.87212	-0.0005406	-1.4961	-0.00092739	619.8693332823459	130.08	2.2313	130.08	129.3	131.53	0					161	43	6	0	0	0	0.93961	1	49964	49964		6.2058	1.6769	1	640630000	+		27218	19351	19480	19639	26663	26663					0.11614974819940471
KSRKRQEPPL	10	Unmodified	_KSRKRQEPPL_					0	0	0			REV__nc|ENSG00000143375|Q9P2M7-2|CGN	REV__nc|ENSG00000143375|Q9P2M7-2|CGN	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	619.870028	1237.7255	-0.7239	-0.00044873	-0.87362	-0.00054153	-1.5975	-0.00099025	619.8693413837175	130	2.0281	130.22	129.59	131.62	0.21419	0.067374	-7.1654E-07	NaN	6.2058	180	39	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	480130000	+		27219	19351	19480	19639							0.11614974819940471
KSRLRNRPV	9	Unmodified	_KSRLRNRPV_					0	0	0		ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	MULTI-MSMS	A375_MHC_IP_R2	2	375.5841979980469	3	375.903629	1124.68906	-0.056872	-2.1378E-05	-0.12262	-4.6095E-05	-0.1795	-6.7473E-05	375.90355195813333	20.142	0.76062	20.752	20.349	21.109	0.61029					19	14	2	0	0	0	0.69884	2	6201	6201;6220		7.1017	3.7821	1	1929900			27220	6791	19481	19640	26664;26665	26664					0.13170142713852329
KSRLSISGW	9	Unmodified	_KSRLSISGW_					0	0	0		nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	MULTI-SECPEP	A375_MHC_IP_R1	1	517.6925048828125	2	517.293091	1032.57163	-0.70111	-0.00036268	0.025067	1.2967E-05	-0.67605	-0.00034971	517.2930013252059	46.876	0.40839	46.876	46.699	47.107	0					12	7	2	0	0	0	0.37663	1	16497	16497		43.772	22.235	1	3075100			27221	1866	19482	19641	26666	26666					0.05664565054416926
KSRLSISGW	9	Unmodified	_KSRLSISGW_					0	0	0		nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	MULTI-SECPEP	A375_MHC_IP_R2	2	517.6923217773438	2	517.293091	1032.57163	-0.70403	-0.00036419	-0.28686	-0.00014839	-0.99089	-0.00051258	517.2929198229397	45.895	0.40345	46.66	46.503	46.906	0.76519					13	7	2	0	0	0	0.67539	1	17210	17210		21.537	11.463	1	2622600			27222	1866	19482	19641	26667	26667					0.05664565054416926
KSRPELLEY	9	Unmodified	_KSRPELLEY_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	568.2113037109375	2	567.811313	1133.60807	-0.39784	-0.0002259	0.22739	0.00012912	-0.17045	-9.6784E-05	567.811377388485	39.418	0.86249	39.418	39.136	39.999	0					46	16	4	0	0	0	0.0092511	1	13426	13426		103.42	21.806	1	62638000			27223	3705	19483	19642	26668	26668					0.04661397160475644
KSRPELLEY	9	Unmodified	_KSRPELLEY_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	379.2767639160156	3	378.876634	1133.60807	0.29212	0.00011068	0.25747	9.7551E-05	0.54959	0.00020823	378.87678024181173	39.413	0.91381	39.413	39.085	39.999	0					53	17	5	0	0	0	0.5212	1	13428	13428		24.882	1.0805	1	69589000			27224	3705	19483	19642	26669	26669					0.04661397160475644
KSRPELLEY	9	Unmodified	_KSRPELLEY_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	568.2107543945312	2	567.811313	1133.60807	-0.73732	-0.00041866	0.060759	3.4499E-05	-0.67656	-0.00038416	567.811314108301	38.503	0.81378	39.277	38.946	39.76	0.77451					44	15	4	0	0	0	0.037085	1	14133	14133		69.338	14.565	1	51208000			27225	3705	19483	19642	26670	26670					0.04661397160475644
KSRPEVITF	9	Unmodified	_KSRPEVITF_					0	0	0		nc|ENSG00000130856|Q9UL36-2|ZNF236;nc|ENSG00000130856|Q9UL36|ZNF236;ENSG00000130856|ENST00000320610|ZNF236	nc|ENSG00000130856|Q9UL36-2|ZNF236	nc|ENSG00000130856|Q9UL36-2|ZNF236	MULTI-SECPEP	A375_MHC_IP_R1	1	539.2081298828125	2	538.808574	1075.60259	-0.93101	-0.00050164	0.45325	0.00024422	-0.47776	-0.00025742	538.8088431577883	41.7	0.46107	41.7	41.419	41.88	0					19	8	3	0	0	0	0.40377	1	14409	14409		41.956	14.327	1	9096600			27226	4290	19484	19643	26671	26671					0.06781718368642942
KSRPEVITF	9	Unmodified	_KSRPEVITF_					0	0	0		nc|ENSG00000130856|Q9UL36-2|ZNF236;nc|ENSG00000130856|Q9UL36|ZNF236;ENSG00000130856|ENST00000320610|ZNF236	nc|ENSG00000130856|Q9UL36-2|ZNF236	nc|ENSG00000130856|Q9UL36-2|ZNF236	MULTI-SECPEP	A375_MHC_IP_R2	2	539.208251953125	2	538.808574	1075.60259	-1.0414	-0.00056111	0.15017	8.0911E-05	-0.89122	-0.0004802	538.8086078284636	40.74	0.4581	41.515	41.285	41.743	0.77451					21	8	3	0	0	0	0.23894	1	15106	15106		47.594	5.7548	1	8462000			27227	4290	19484	19643	26672	26672					0.06781718368642942
KSRQIRQFY	9	Unmodified	_KSRQIRQFY_					0	0	0		PTPRA|p.H693Y|1|0.17|ENSG00000132670|chr20:3035820-3035820|C/T|missense_variant	PTPRA|p.H693Y|1|0.17|ENSG00000132670|chr20:3035820-3035820|C/T|missense_variant	PTPRA|p.H693Y|1|0.17|ENSG00000132670|chr20:3035820-3035820|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	613.3422241210938	2	613.343646	1224.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.19	1	120.72	120.22	121.22	0.5321								0	0	0	0.15306	1	45832	45832		22.736	9.6938	1				27228	15247	19485	19644	26673	26673					0.06939016757132777
KSRRGNLTFM	10	Unmodified	_KSRRGNLTFM_					0	0	0		ENST00000551203.1_1_2:74348081-74348189:+|nuORF	ENST00000551203.1_1_2:74348081-74348189:+|nuORF	ENST00000551203.1_1_2:74348081-74348189:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	605.251953125	2	605.329682	1208.64481	-0.32226	-0.00019508	-0.6651	-0.0004026	-0.98736	-0.00059768	605.3291350166933	84.479	0.65796	85.215	84.968	85.626	0.73602					34	12	4	0	0	0	0.70312	1	32186	32186		12.241	5.5175	1	3659000			27229	13379	19486	19645	26674	26674					0.048833705053539234
KSRRKKKRKKL	11	Unmodified	_KSRRKKKRKKL_					0	0	0		ENSG00000170396|ENST00000302277|ZNF804A	ENSG00000170396|ENST00000302277|ZNF804A	ENSG00000170396|ENST00000302277|ZNF804A	MSMS	A375_MHC_IP_R2	2	728.3109130859375	2	728.507161	1454.99977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.51	1	117.17	116.67	117.67	0.65962								0	0	0	0.16337	1	44018	44018		1.1933	0.88631	1				27230	7503	19487	19646	26675	26675					0.2904683736969673
KSRRKVVLF	9	Unmodified	_KSRRKVVLF_					0	0	0		ENST00000479285.5_1_1:114438325-114438811:-|nuORF	ENST00000479285.5_1_1:114438325-114438811:-|nuORF	ENST00000479285.5_1_1:114438325-114438811:-|nuORF	MSMS	A375_MHC_IP_R1	1	378.2794494628906	3	378.248625	1131.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.922	1	72.922	72.422	73.422	0								0	0	0	0.15486	1	26540	26540		2.9952	0	1				27231	12471	19488	19647	26676	26676					0.1634538552182221
KSSDIAKTF	9	Unmodified	_KSSDIAKTF_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3	nc|ENSG00000102024|P13797-3|PLS3	nc|ENSG00000102024|P13797-3|PLS3	MULTI-MSMS	A375_MHC_IP_R1	1	499.17144775390625	2	498.771657	995.528761	-0.35208	-0.00017561	-0.26182	-0.00013059	-0.6139	-0.00030619	498.77147711031415	25.179	0.50851	25.179	25.002	25.511	0					21	9	3	0	0	0	0.0095437	1	7306	7306		108.26	21.004	1	17792000			27232	2350	19489	19648	26677	26677					0.03081750206331435
KSSDIAKTF	9	Unmodified	_KSSDIAKTF_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3	nc|ENSG00000102024|P13797-3|PLS3	nc|ENSG00000102024|P13797-3|PLS3	MULTI-SECPEP	A375_MHC_IP_R2	2	499.1711730957031	2	498.771657	995.528761	-0.8674	-0.00043264	-0.035129	-1.7521E-05	-0.90253	-0.00045016	498.7715380068991	24.528	0.30511	25.172	25.009	25.314	0.64368					9	5	2	0	0	0	0.14273	1	8086	8086		60.899	7.5826	1	7179400			27233	2350	19489	19648	26678	26678					0.03081750206331435
KSSDPFSLW	9	Unmodified	_KSSDPFSLW_					0	0	0		ENSG00000115464|ENST00000398571|USP34	ENSG00000115464|ENST00000398571|USP34	ENSG00000115464|ENST00000398571|USP34	MULTI-MSMS	A375_MHC_IP_R2	2	533.7003784179688	2	533.763832	1065.51311	-0.52371	-0.00027954	0.10117	5.3999E-05	-0.42254	-0.00022554	533.7637051058966	99.995	0.81231	100.76	100.27	101.08	0.76278					44	15	4	0	0	0	0.2415	1	37898	37898		34.932	8.0484	1	4488000			27234	3311	19490	19649	26679	26679					-0.017025363107222802
KSSEVFTTF	9	Unmodified	_KSSEVFTTF_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	A375_MHC_IP_R1	1	523.66357421875	2	523.263665	1044.51278	-0.50706	-0.00026533	-0.02652	-1.3877E-05	-0.53358	-0.0002792	523.263657159856	60.592	1.6794	60.592	60.109	61.788	0					84	32	5	0	0	0	0.020087	2	21760	21760;21971		83.429	33.575	1	278020000			27235	1798	19491	19650	26680;26681	26680					-0.007699560306036801
KSSEVFTTF	9	Unmodified	_KSSEVFTTF_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-SECPEP	A375_MHC_IP_R2	2	523.6639404296875	2	523.263665	1044.51278	-0.91911	-0.00048094	-0.051001	-2.6687E-05	-0.97011	-0.00050763	523.2636516444145	59.728	1.7236	60.475	59.896	61.62	0.74714					86	33	5	0	0	0	0.048303	1	22531	22531		93.166	38.392	1	327820000			27236	1798	19491	19650	26682	26682					-0.007699560306036801
KSSIDLYFY	9	Unmodified	_KSSIDLYFY_					0	0	0		ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-3|COPZ1;nc|ENSG00000111481|P61923-5|COPZ1;ENSG00000111481|ENST00000262061|COPZ1;nc|ENSG00000111481|P61923-4|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF	ENST00000551412.5_1_12:54718935-54741629:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	568.68603515625	2	568.28714	1134.55973	-0.54287	-0.0003085	-0.01305	-7.4163E-06	-0.55592	-0.00031592	568.2870824893475	90.997	0.96278	90.997	90.641	91.604	0					31	18	3	0	0	0	0.06083	1	33436	33436		60.074	22.1	1	3502700			27237	2995	19492	19651	26683	26683					-0.0021709647942316224
KSSIDLYFY	9	Unmodified	_KSSIDLYFY_					0	0	0		ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-3|COPZ1;nc|ENSG00000111481|P61923-5|COPZ1;ENSG00000111481|ENST00000262061|COPZ1;nc|ENSG00000111481|P61923-4|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF	ENST00000551412.5_1_12:54718935-54741629:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	568.686279296875	2	568.28714	1134.55973	-0.25514	-0.00014499	-0.39186	-0.00022269	-0.647	-0.00036768	568.2870090291534	90.305	0.76132	91.037	90.699	91.46	0.7318					25	14	3	0	0	0	0.39273	1	34345	34345		56.177	18.203	1	3353700			27238	2995	19492	19651	26684	26684					-0.0021709647942316224
KSSKIMESF	9	Unmodified	_KSSKIMESF_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1;ATP1A3|p.E141K|1|0.23|ENSG00000105409|chr19:41986166-41986166|C/T|missense_variant;ENST00000463382.1_1_1:116929939-116930896:+|nuORF;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;ENSG00000132681|ENST00000368081|ATP1A4	nc|ENSG00000163399|P05023-3|ATP1A1;ENSG00000105409|ENST00000648268|ATP1A3;ENSG00000132681|ENST00000368081|ATP1A4	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-SECPEP	A375_MHC_IP_R1	1	529.173095703125	2	528.773342	1055.53213	-0.61518	-0.00032529	0.06634	3.5079E-05	-0.54884	-0.00029021	528.7733679721869	32.015	0.71545	32.015	31.819	32.535	0					27	13	3	0	0	0	0.038565	1	10305	10305		94.909	51.05	1	5128000			27239	6659;4440;2604	19493	19652	26685	26685					0.00658676988678053
KSSKIMESF	9	Unmodified	_KSSKIMESF_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1;ATP1A3|p.E141K|1|0.23|ENSG00000105409|chr19:41986166-41986166|C/T|missense_variant;ENST00000463382.1_1_1:116929939-116930896:+|nuORF;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;ENSG00000132681|ENST00000368081|ATP1A4	nc|ENSG00000163399|P05023-3|ATP1A1;ENSG00000105409|ENST00000648268|ATP1A3;ENSG00000132681|ENST00000368081|ATP1A4	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	A375_MHC_IP_R2	2	529.20556640625	2	528.773342	1055.53213	-0.57247	-0.00030271	-0.082615	-4.3685E-05	-0.65508	-0.00034639	528.7732202873591	31.268	0.46058	31.987	31.719	32.18	0.71857					16	8	2	0	0	0	0.11638	1	11070	11070		47.732	22.741	1	6254000			27240	6659;4440;2604	19493	19652	26686	26686					0.00658676988678053
KSSKKSKVN	9	Unmodified	_KSSKKSKVN_					0	0	0			REV__nc|ENSG00000284862|Q9UFE4|CCDC39	REV__nc|ENSG00000284862|Q9UFE4|CCDC39	MSMS	A375_MHC_IP_R1	1	503.6847839355469	2	503.306198	1004.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.84	1	129.84	129.34	130.34	0								0	0	0	0.15273	1	49949	49949		17.113	0.1706	1		+		27241	27552	19494	19653	26687	26687					0.09572834225900806
KSSYSMMN	8	Unmodified	_KSSYSMMN_					0	0	0			REV__tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1	REV__tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	474.6246032714844	2	474.201696	946.388838	-0.94747	-0.00044929	-0.91486	-0.00043383	-1.8623	-0.00088312	474.201162582351	56.571	0.46047	57.321	57.101	57.561	0.75014					12	8	2	0	0	0	0.9187	1	21355	21355		19.257	0	1	1665800	+		27242	28769	19495	19654	26688	26688					-0.08650073394039737
KSTAISLFY	9	Unmodified	_KSTAISLFY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.R415Efs*11|1|0.09|ENSG00000167658|chr19:3980617-3980617|G/-|frameshift_variant;EEF2|p.V416Lfs*18|1|0.09|ENSG00000167658|chr19:3980618-3980619|-/AGCAATCCGCCTGCCTCAGCCTC|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-SECPEP	A375_MHC_IP_R1	1	515.6837768554688	2	515.2844	1028.55425	-0.61963	-0.00031928	-0.14399	-7.4196E-05	-0.76362	-0.00039348	515.2843125506575	81.029	0.66061	81.029	80.693	81.353	0					27	12	3	0	0	0	0.13208	1	29589	29589		57.722	7.789	1	9626500			27243	7207	19496	19655	26689	26689					0.04111224728740126
KSTAISLFY	9	Unmodified	_KSTAISLFY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.R415Efs*11|1|0.09|ENSG00000167658|chr19:3980617-3980617|G/-|frameshift_variant;EEF2|p.V416Lfs*18|1|0.09|ENSG00000167658|chr19:3980618-3980619|-/AGCAATCCGCCTGCCTCAGCCTC|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-SECPEP	A375_MHC_IP_R2	2	515.6834106445312	2	515.2844	1028.55425	-0.74184	-0.00038226	-0.38238	-0.00019703	-1.1242	-0.00057929	515.2840906898936	80.05	0.65742	80.795	80.505	81.163	0.74474					27	12	3	0	0	0	0.30925	1	30404	30404		41.956	9.6501	1	9092000			27244	7207	19496	19655	26690	26690					0.04111224728740126
KSTDYANFY	9	Unmodified	_KSTDYANFY_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MSMS	A375_MHC_IP_R1	1	554.7051391601562	2	554.750921	1107.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.853	1	48.853	48.353	49.353	0								0	0	0	0.15196	1	17255	17255		18.373	3.1246	1				27245	879	19497	19656	26691	26691					-0.06215430552992984
KSTELLIRKL	10	Unmodified	_KSTELLIRKL_					0	0	0		nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000197153|ENST00000359303|H3C12;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000203852|ENST00000403683|H3C15;ENSG00000203811|ENST00000369158|H3C14;ENSG00000273983|ENST00000614378|H3C8;ENSG00000183598|ENST00000331491|H3C13;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000168148|ENST00000366696|H3-4;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000197409|ENST00000356476|H3C4;ENSG00000188375|ENST00000340398|H3-5;ENST00000586518.1_1_17:73774674-73775034:-|nuORF	nc|ENSG00000273213|Q5TEC6|H3-7	nc|ENSG00000273213|Q5TEC6|H3-7	MULTI-MSMS	A375_MHC_IP_R2	2	401.3272705078125	3	400.927329	1199.76016	-0.63883	-0.00025612	0.5997	0.00024044	-0.039125	-1.5686E-05	400.92754724545136	36.917	0.45668	37.688	37.41	37.867	0.7709					28	8	4	0	0	0	0.00093258	1	13447	13447		129.39	0	1	17668000			27246	14936	19498	19657	26692	26692					0.16826797908038316
KSTELLIRKL	10	Unmodified	_KSTELLIRKL_					0	0	0		nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000197153|ENST00000359303|H3C12;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000203852|ENST00000403683|H3C15;ENSG00000203811|ENST00000369158|H3C14;ENSG00000273983|ENST00000614378|H3C8;ENSG00000183598|ENST00000331491|H3C13;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000168148|ENST00000366696|H3-4;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000197409|ENST00000356476|H3C4;ENSG00000188375|ENST00000340398|H3-5;ENST00000586518.1_1_17:73774674-73775034:-|nuORF	nc|ENSG00000273213|Q5TEC6|H3-7	nc|ENSG00000273213|Q5TEC6|H3-7	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	400.927329	1199.76016	-0.52581	-0.00021081	0.74183	0.00029742	0.21602	8.6609E-05	400.92757354056926	37.939	0.50842	37.939	37.71	38.218	0	0.12559	7.6718E-05	NaN	129.39	30	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24126000			27247	14936	19498	19657							0.16826797908038316
KSTIGVEF	8	Unmodified	_KSTIGVEF_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A;RAB11B|p.R51C|1|0.29|ENSG00000185236|chr19:8399973-8399973|C/T|missense_variant;nc|ENSG00000103769|P62491-2|RAB11A;ENST00000598706.1_1_19:8455252-8465174:+|nuORF;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000185236|ENST00000328024|RAB11B	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-SECPEP	A375_MHC_IP_R1	1	441.142578125	2	440.742368	879.470183	-0.12422	-5.4751E-05	-0.7539	-0.00033228	-0.87812	-0.00038703	440.7419474163058	55.087	0.66035	55.087	54.822	55.482	0					27	12	3	0	0	0	0.68831	1	19683	19683		41.84	20.093	1	4862100			27248	2469	19499	19658	26693	26693					0.02562693631853108
KSTIGVEF	8	Unmodified	_KSTIGVEF_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A;RAB11B|p.R51C|1|0.29|ENSG00000185236|chr19:8399973-8399973|C/T|missense_variant;nc|ENSG00000103769|P62491-2|RAB11A;ENST00000598706.1_1_19:8455252-8465174:+|nuORF;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000185236|ENST00000328024|RAB11B	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-SECPEP	A375_MHC_IP_R2	2	441.14202880859375	2	440.742368	879.470183	-0.61932	-0.00027296	-0.72744	-0.00032061	-1.3468	-0.00059358	440.7417536979577	54.187	0.76128	54.938	54.66	55.422	0.75077					24	14	3	0	0	0	0.80467	1	20439	20439		34.402	0	1	4884000			27249	2469	19499	19658	26694	26694					0.02562693631853108
KSTKRLLPS	9	Unmodified	_KSTKRLLPS_					0	0	0			REV__ENSG00000172818|ENST00000335987|OVOL1	REV__ENSG00000172818|ENST00000335987|OVOL1	MULTI-SECPEP	A375_MHC_IP_R1	1	514.6982421875	2	515.324391	1028.63423	0.045442	2.3417E-05	-0.86879	-0.00044771	-0.82335	-0.00042429	515.3237549890466	44.853	0.60837	44.853	44.575	45.183	0					21	10	3	0	0	0	0.54812	1	15656	15656		10.151	0	1	4610300	+		27250	21173	19500	19659	26695	26695					0.12105711122626417
KSTKRLLPS	9	Unmodified	_KSTKRLLPS_					0	0	0			REV__ENSG00000172818|ENST00000335987|OVOL1	REV__ENSG00000172818|ENST00000335987|OVOL1	MULTI-MSMS	A375_MHC_IP_R2	2	514.716064453125	2	515.324391	1028.63423	-0.56951	-0.00029348	-0.3068	-0.0001581	-0.87631	-0.00045159	515.3241225624473	43.777	0.65537	44.546	44.228	44.883	0.76909					26	12	3	0	0	0	0.50892	1	16299	16299		19.362	1.2156	1	3638000	+		27251	21173	19500	19659	26696	26696					0.12105711122626417
KSTLINSL	8	Unmodified	_KSTLINSL_					0	0	0		ENSG00000122545|ENST00000350320|SEPTIN7;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF;ENST00000475109.5_1_7:35903172-35919218:+|nuORF;ENST00000473201.1_1_7:35903172-35913395:+|nuORF;ENST00000563743.1_1_16:30393079-30393866:-|nuORF;ENST00000494824.5_1_2:242255375-242275396:+|nuORF;ENST00000366210.2_1_2:242263647-242276275:+|nuORF;nc|ENSG00000180096|Q8WYJ6-2|SEPTIN1;ENST00000563957.6_1_16:30392598-30394125:-|nuORF;ENSG00000180096|ENST00000321367|SEPTIN1;ENST00000484740.1_1_2:242255375-242274650:+|nuORF;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000467971.5_1_2:242255375-242276932:+|nuORF	ENSG00000122545|ENST00000350320|SEPTIN7;ENSG00000168385|ENST00000391971|SEPTIN2	ENSG00000122545|ENST00000350320|SEPTIN7	MULTI-MSMS	A375_MHC_IP_R1	1	438.6632995605469	2	438.263468	874.512382	-0.093864	-4.1137E-05	0.35383	0.00015507	0.25997	0.00011393	438.2635533012194	50.889	0.76061	50.889	50.561	51.322	0					37	14	4	0	0	0	0.03252	1	18009	18009		118.89	15.146	1	23161000			27252	3789;7293	19501	19660	26697	26697					0.07010669040232642
KSTLINSL	8	Unmodified	_KSTLINSL_					0	0	0		ENSG00000122545|ENST00000350320|SEPTIN7;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF;ENST00000475109.5_1_7:35903172-35919218:+|nuORF;ENST00000473201.1_1_7:35903172-35913395:+|nuORF;ENST00000563743.1_1_16:30393079-30393866:-|nuORF;ENST00000494824.5_1_2:242255375-242275396:+|nuORF;ENST00000366210.2_1_2:242263647-242276275:+|nuORF;nc|ENSG00000180096|Q8WYJ6-2|SEPTIN1;ENST00000563957.6_1_16:30392598-30394125:-|nuORF;ENSG00000180096|ENST00000321367|SEPTIN1;ENST00000484740.1_1_2:242255375-242274650:+|nuORF;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000467971.5_1_2:242255375-242276932:+|nuORF	ENSG00000122545|ENST00000350320|SEPTIN7;ENSG00000168385|ENST00000391971|SEPTIN2	ENSG00000122545|ENST00000350320|SEPTIN7	MULTI-MSMS	A375_MHC_IP_R2	2	438.6631774902344	2	438.263468	874.512382	-0.55613	-0.00024373	0.27778	0.00012174	-0.27835	-0.00012199	438.26353327095734	49.915	0.8647	50.669	50.294	51.159	0.75406					38	16	3	0	0	0	0.03252	1	18703	18703		118.89	3.2027	1	16691000			27253	3789;7293	19501	19660	26698	26698					0.07010669040232642
KSTLINTL	8	Unmodified	_KSTLINTL_					0	0	0		nc|ENSG00000184640|Q9UHD8-4|SEPTIN9;nc|ENSG00000184640|Q9UHD8-9|SEPTIN9;ENST00000592481.5_1_17:75447336-75492345:+|nuORF;nc|ENSG00000184640|Q9UHD8-3|SEPTIN9;nc|ENSG00000184640|Q9UHD8-8|SEPTIN9;nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;nc|ENSG00000184640|Q9UHD8-2|SEPTIN9;nc|ENSG00000184640|Q9UHD8-5|SEPTIN9;ENSG00000184640|ENST00000427177|SEPTIN9	nc|ENSG00000184640|Q9UHD8-4|SEPTIN9	nc|ENSG00000184640|Q9UHD8-4|SEPTIN9	MULTI-MSMS	A375_MHC_IP_R2	2	445.6710510253906	2	445.271293	888.528032	-0.5554	-0.00024731	0.417	0.00018568	-0.1384	-6.1625E-05	445.2713877824788	50.282	0.65881	51.036	50.753	51.412	0.75406					30	12	3	0	0	0	0.67331	1	18896	18896		41.84	7.7372	1	9232500			27254	8599	19502	19661	26699	26699					0.0793095555727632
KSTLTIFRF	9	Unmodified	_KSTLTIFRF_					0	0	0		ENST00000512018.5_1_4:5053633-5141954:+|nuORF	ENST00000512018.5_1_4:5053633-5141954:+|nuORF	ENST00000512018.5_1_4:5053633-5141954:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	557.2265014648438	2	556.826766	1111.63898	-0.76447	-0.00042568	0.19591	0.00010909	-0.56856	-0.00031659	556.826905511522	76.692	0.45774	77.432	77.146	77.604	0.74052					19	8	3	0	0	0	0.36673	1	29089	29089		45.74	19.472	1	2849300			27255	12915	19503	19662	26700	26700					0.08762595265375239
KSTNPYGW	8	Unmodified	_KSTNPYGW_					0	0	0		ENST00000575403.5_2_17:19241035-19261261:-|nuORF;ENST00000477478.6_2_17:19247025-19261261:-|nuORF;ENST00000477683.5_1_17:19250580-19265912:-|nuORF;nc|ENSG00000108641|Q9UPM9-2|B9D1;ENSG00000108641|ENST00000261499|B9D1	ENST00000575403.5_2_17:19241035-19261261:-|nuORF	ENST00000575403.5_2_17:19241035-19261261:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	477.1296081542969	2	476.729792	951.445031	-0.41551	-0.00019809	0.15146	7.2203E-05	-0.26406	-0.00012588	476.7298576954892	40.686	0.50666	40.686	40.406	40.913	0					17	9	2	0	0	0	0.90057	1	14006	14006		22.736	19.14	1	3883500			27256	2824	19504	19663	26701	26701					-0.03263361170718326
KSTNPYGW	8	Unmodified	_KSTNPYGW_					0	0	0		ENST00000575403.5_2_17:19241035-19261261:-|nuORF;ENST00000477478.6_2_17:19247025-19261261:-|nuORF;ENST00000477683.5_1_17:19250580-19265912:-|nuORF;nc|ENSG00000108641|Q9UPM9-2|B9D1;ENSG00000108641|ENST00000261499|B9D1	ENST00000575403.5_2_17:19241035-19261261:-|nuORF	ENST00000575403.5_2_17:19241035-19261261:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	477.1293640136719	2	476.729792	951.445031	-0.57792	-0.00027551	0.039135	1.8657E-05	-0.53879	-0.00025686	476.7296608300617	39.897	0.50719	40.671	40.473	40.98	0.77451					14	9	2	0	0	0	0.9187	1	14799	14799		25.399	16.654	1	2602900			27257	2824	19504	19663	26702	26702					-0.03263361170718326
KSTNRLLL	8	Unmodified	_KSTNRLLL_					0	0	0		nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1	nc|ENSG00000102038|P28370-2|SMARCA1	nc|ENSG00000102038|P28370-2|SMARCA1	MULTI-SECPEP	A375_MHC_IP_R1	1	473.19775390625	2	472.798009	943.581465	-0.3759	-0.00017772	0.034677	1.6395E-05	-0.34122	-0.00016133	472.7980303510163	33.673	0.55555	33.673	33.496	34.052	0					15	10	2	0	0	0	0.84294	1	11078	11078		30.637	0	1	2940800			27258	2352	19505	19664	26703	26703					0.10741753059812709
KSTQFEYAW	9	Unmodified	_KSTQFEYAW_					0	0	0		ENST00000473527.5_1_7:100883089-100895220:-|nuORF;ENSG00000214253|ENST00000223136|FIS1	ENST00000473527.5_1_7:100883089-100895220:-|nuORF	ENST00000473527.5_1_7:100883089-100895220:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	580.674560546875	2	580.274564	1158.53457	-0.42754	-0.00024809	0.034517	2.0029E-05	-0.39303	-0.00022806	580.2747319509524	65.478	0.60816	66.216	65.817	66.425	0.73812					19	11	2	0	0	0	0.5212	1	24846	24846		26.268	15.469	1	2304600			27259	9610	19506	19665	26704	26704					-0.03835151282009974
KSTQFEYAW	9	Unmodified	_KSTQFEYAW_					0	0	0		ENST00000473527.5_1_7:100883089-100895220:-|nuORF;ENSG00000214253|ENST00000223136|FIS1	ENST00000473527.5_1_7:100883089-100895220:-|nuORF	ENST00000473527.5_1_7:100883089-100895220:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	580.274564	1158.53457	-0.3882	-0.00022526	0.18751	0.00010881	-0.20069	-0.00011645	580.2749021170827	66.325	0.5571	66.325	65.972	66.529	0	0.054875	6.8217E-05	NaN	26.268	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1725800			27260	9610	19506	19665							-0.03835151282009974
KSVDIEVDL	9	Unmodified	_KSVDIEVDL_					0	0	0		ENSG00000138382|ENST00000260953|METTL5	ENSG00000138382|ENST00000260953|METTL5	ENSG00000138382|ENST00000260953|METTL5	MULTI-MSMS	A375_MHC_IP_R2	2	511.1771240234375	2	509.276772	1016.53899	-0.73516	-0.0003744	-1.0689	-0.00054436	-1.8041	-0.00091877	509.2771544171825	41.903	1.1721	42.678	42.098	43.27	0.77451					85	22	5	0	0	0	0.43185	1	15499	15499		23.148	3.8914	1	53667000			27261	4987	19507	19666	26705	26705					0.031383131409029374
KSVDIRPL	8	Unmodified	_KSVDIRPL_					0	0	0			REV__nc|ENSG00000096093|Q5JVL4-3|EFHC1	REV__nc|ENSG00000096093|Q5JVL4-3|EFHC1	MULTI-SECPEP	A375_MHC_IP_R2	2	464.68450927734375	2	464.284734	926.554916	-0.65581	-0.00030448	-4.1855	-0.0019433	-4.8413	-0.0022478	464.28472188791767	32.613	0.35626	33.35	33.112	33.468	0.73692					14	6	3	0	0	0	0.87023	1	11659	11659		16.149	0	1	4114500	+		27262	17006	19508	19667	26706	26706					0.08870064168456793
KSVELREKF	9	Unmodified	_KSVELREKF_					0	0	0			REV__tr|U7T150|U7T150_FUSNUChorismatemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00692PE=4SV=1	REV__tr|U7T150|U7T150_FUSNUChorismatemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00692PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	379.6207580566406	3	379.220513	1134.63971	0.013738	5.2097E-06	0.13179	4.9978E-05	0.14553	5.5188E-05	379.2204881353523	26.414	0.5072	26.414	26.271	26.779	0					14	9	2	0	0	0	0.67152	1	7903	7903		9.544	1.0997	1	2838800	+		27263	28695	19509	19668	26707	26707					0.07777389914417654
KSVFITRKL	9	Unmodified	_KSVFITRKL_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP;ENST00000496607.5_1_21:47655184-47686088:-|nuORF;ENST00000486937.5_1_21:47666536-47687014:-|nuORF	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	A375_MHC_IP_R1	1	364.96929931640625	3	364.569365	1090.68626	0.17696	6.4514E-05	-0.062683	-2.2852E-05	0.11428	4.1662E-05	364.56925070802225	28.782	0.40379	28.782	28.541	28.945	0					19	7	4	0	0	0	0.014789	1	8926	8926		74.772	54.191	1	6775800			27264	6414	19510	19669	26708	26708					0.14454874536363604
KSVFITRKL	9	Unmodified	_KSVFITRKL_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP;ENST00000496607.5_1_21:47655184-47686088:-|nuORF;ENST00000486937.5_1_21:47666536-47687014:-|nuORF	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	A375_MHC_IP_R2	2	364.9690856933594	3	364.569365	1090.68626	-0.050095	-1.8263E-05	0.036747	1.3397E-05	-0.013348	-4.8662E-06	364.5693190819365	27.907	0.40561	28.586	28.351	28.757	0.67857					16	7	3	0	0	0	0.010044	1	9588	9588		105.35	75.908	1	5996300			27265	6414	19510	19669	26709	26709					0.14454874536363604
KSVGVFEAF	9	Unmodified	_KSVGVFEAF_					0	0	0		ENST00000475009.1_1_21:38610748-38639643:-|nuORF;ENST00000480452.5_1_21:38605608-38639601:-|nuORF;ENST00000399000.7_1_21:38604874-38639643:-|nuORF;nc|ENSG00000157538|O14972-2|VPS26C;ENSG00000157538|ENST00000309117|VPS26C	ENST00000475009.1_1_21:38610748-38639643:-|nuORF	ENST00000475009.1_1_21:38610748-38639643:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	492.6632080078125	2	492.263468	982.512382	-0.49521	-0.00024377	-0.24969	-0.00012291	-0.7449	-0.00036669	492.26348224777354	78.122	0.56058	78.865	78.572	79.132	0.74294					25	10	3	0	0	0	0.16595	1	29666	29666		61.602	25.475	1	5094500			27266	6250	19511	19670	26710	26710					0.02042669040235978
KSVGYKLPNK	10	Unmodified	_KSVGYKLPNK_					0	0	0		nc|ENSG00000180113|O60522-2|TDRD6;ENSG00000180113|ENST00000316081|TDRD6	nc|ENSG00000180113|O60522-2|TDRD6	nc|ENSG00000180113|O60522-2|TDRD6	MULTI-SECPEP	A375_MHC_IP_R1	1	379.2865905761719	3	378.560758	1132.66044	0.14962	5.6639E-05	0.047464	1.7968E-05	0.19708	7.4606E-05	378.5607699556165	24.322	0.65727	24.322	23.94	24.597	0					22	12	2	0	0	0	0.93005	1	6826	6826		6.6235	1.7264	1	7306900			27267	8278	19512	19671	26711	26711					0.09941980294070163
KSVIDYQTHF	10	Unmodified	_KSVIDYQTHF_					0	0	0		ENST00000503010.1_1_5:114951908-114961566:-|nuORF;ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2;nc|ENSG00000134970|Q9Y3B3-2|TMED7;ENST00000514548.1_1_5:114952016-114952166:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	413.6113586425781	3	413.211906	1236.61389	0.35731	0.00014765	-0.14407	-5.9532E-05	0.21324	8.8115E-05	413.21178792312105	47.668	0.60543	47.668	47.315	47.92	0					31	11	5	0	0	0	0.017482	1	16756	16756		68.484	56.309	1	5254700			27268	4631	19513	19672	26712	26712					0.005044956721349081
KSVIDYQTHF	10	Unmodified	_KSVIDYQTHF_					0	0	0		ENST00000503010.1_1_5:114951908-114961566:-|nuORF;ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2;nc|ENSG00000134970|Q9Y3B3-2|TMED7;ENST00000514548.1_1_5:114952016-114952166:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	619.7144165039062	2	619.31422	1236.61389	-0.29342	-0.00018172	-0.14982	-9.2783E-05	-0.44324	-0.0002745	619.3138198910716	47.683	0.50356	47.683	47.416	47.92	0					28	9	4	0	0	0	0.2369	1	16772	16772		76.068	48.845	1	5790200			27269	4631	19513	19672	26713	26713					0.005044956721349081
KSVIDYQTHF	10	Unmodified	_KSVIDYQTHF_					0	0	0		ENST00000503010.1_1_5:114951908-114961566:-|nuORF;ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2;nc|ENSG00000134970|Q9Y3B3-2|TMED7;ENST00000514548.1_1_5:114952016-114952166:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	413.61199951171875	3	413.211906	1236.61389	0.20759	8.5778E-05	0.18972	7.8396E-05	0.39731	0.00016417	413.2120560070694	46.827	0.76286	47.588	47.361	48.123	0.76128					30	14	3	0	0	0	0.017482	1	17560	17560		68.484	52.745	1	7224500			27270	4631	19513	19672	26714	26714					0.005044956721349081
KSVIDYQTHF	10	Unmodified	_KSVIDYQTHF_					0	0	0		ENST00000503010.1_1_5:114951908-114961566:-|nuORF;ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2;nc|ENSG00000134970|Q9Y3B3-2|TMED7;ENST00000514548.1_1_5:114952016-114952166:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	619.7144165039062	2	619.31422	1236.61389	-0.49946	-0.00030932	-0.33183	-0.00020551	-0.83129	-0.00051483	619.3141941266898	46.898	0.50693	47.66	47.361	47.867	0.76128					21	9	3	0	0	0	0.64388	1	17575	17575		50.648	29.058	1	4006800			27271	4631	19513	19672	26715	26715					0.005044956721349081
KSVKVFAEY	9	Unmodified	_KSVKVFAEY_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1970825195312	2	535.797675	1069.5808	-0.52397	-0.00028074	0.056346	3.019E-05	-0.46762	-0.00025055	535.7975124621956	35.497	0.35653	35.497	35.269	35.625	0					11	6	2	0	0	0	0.3697	1	11824	11824		48.073	17.848	1	4585300			27272	3579	19514	19673	26716	26716					0.04878913620086678
KSVLVKQTI	9	Unmodified	_KSVLVKQTI_					0	0	0		PUF60|p.T484Rfs*40|1|0.47|ENSG00000179950|chr8:143816748-143816749|TG/-|frameshift_variant;nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60;ENST00000531995.1_1_8:144902796-144903907:-|nuORF;ENST00000532127.5_1_8:144902796-144911473:-|nuORF;ENST00000526151.5_1_8:144903610-144911473:-|nuORF	PUF60|p.T484Rfs*40|1|0.47|ENSG00000179950|chr8:143816748-143816749|TG/-|frameshift_variant	PUF60|p.T484Rfs*40|1|0.47|ENSG00000179950|chr8:143816748-143816749|TG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	508.72845458984375	2	508.329142	1014.64373	-0.54221	-0.00027562	-0.10573	-5.3745E-05	-0.64794	-0.00032936	508.3289998905053	27.659	0.40426	27.659	27.482	27.887	0					13	7	2	0	0	0	0.48018	1	8458	8458		23.016	8.7975	1	2981500			27273	15256	19515	19674	26717	26717					0.1369947940813745
KSVPQRHRRTP	11	Unmodified	_KSVPQRHRRTP_					0	0	0		ENSG00000121281|ENST00000673801|ADCY7;ENST00000570187.1_1_16:50338327-50342394:+|nuORF	ENSG00000121281|ENST00000673801|ADCY7	ENSG00000121281|ENST00000673801|ADCY7	MULTI-MSMS	A375_MHC_IP_R1	1	454.9998474121094	3	454.600609	1360.78	-0.53842	-0.00024477	-0.39445	-0.00017932	-0.93287	-0.00042408	454.6003080758432	137.1	0.56741	137.1	136.92	137.49	0					15	10	2	0	0	0	0.7342	1	52807	52807		2.2527	0.51045	1	2358900			27274	3715	19516	19675	26718	26718					0.11403986691334467
KSVQVKVILIE	11	Unmodified	_KSVQVKVILIE_					0	0	0		ENST00000497051.5_1_2:233054-249752:-|nuORF	ENST00000497051.5_1_2:233054-249752:-|nuORF	ENST00000497051.5_1_2:233054-249752:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	628.8028564453125	2	628.402838	1254.79112	-0.63099	-0.00039652	0.4958	0.00031156	-0.13519	-8.4955E-05	628.4031947519685	143.51	2.4724	143.53	142.47	144.95	0.024429					71	51	2	0	0	0	0.73886	1	56276	56276		1.3295	1.0605	1	807550			27275	12737	19517	19676	26719	26719					0.17391951222271018
KSVSKKAITKK	11	Unmodified	_KSVSKKAITKK_					0	0	0		ENSG00000183354|ENST00000399933|KIAA2026	ENSG00000183354|ENST00000399933|KIAA2026	ENSG00000183354|ENST00000399933|KIAA2026	MULTI-MSMS	A375_MHC_IP_R1	1	609.7999267578125	2	609.40063	1216.78671	-0.68404	-0.00041685	-0.0023339	-1.4223E-06	-0.68637	-0.00041828	609.400456740171	149.57	2.1776	149.57	147.83	150	0					221	69	4	0	0	0	0.73934	3	56729	56729;56940;57118		0	0	1	1169300			27276	8488	19518	19677	26720;26721;26722	26720					0.1869848679932602
KSVSKKAITKK	11	Unmodified	_KSVSKKAITKK_					0	0	0		ENSG00000183354|ENST00000399933|KIAA2026	ENSG00000183354|ENST00000399933|KIAA2026	ENSG00000183354|ENST00000399933|KIAA2026	MULTI-MSMS	A375_MHC_IP_R2	2	609.8001708984375	2	609.40063	1216.78671	-0.27035	-0.00016475	-0.36901	-0.00022487	-0.63936	-0.00038963	609.4002102357082	149.49	1.8625	149.51	148.15	150.01	0.018265					223	67	4	0	0	0	0.73934	3	57777	57777;57981;58156		0	0	1	1134100			27277	8488	19518	19677	26723;26724;26725	26723					0.1869848679932602
KSVTAFFKW	9	Unmodified	_KSVTAFFKW_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-SECPEP	A375_MHC_IP_R1	1	557.7078857421875	2	557.30821	1112.60187	-0.54988	-0.00030645	4.2767	0.0023834	3.7268	0.002077	557.3108819005838	77.298	1.1693	77.298	76.93	78.099	0					40	22	3	0	0	0	0.055612	1	28159	28159		101.54	78.885	1	2906900			27278	3254	19519	19678	26726	26726					0.050069237196112226
KSVTAFFKW	9	Unmodified	_KSVTAFFKW_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-SECPEP	A375_MHC_IP_R2	2	372.1163330078125	3	371.874565	1112.60187	0.45909	0.00017072	-0.8162	-0.00030352	-0.35711	-0.0001328	371.87422143172967	76.217	0.40458	76.958	76.691	77.095	0.74052					11	7	2	0	0	0	0.79713	1	28911	28911		6.6304	4.3476	1	1427000			27279	3254	19519	19678	26727	26727					0.050069237196112226
KSVTAFFKW	9	Unmodified	_KSVTAFFKW_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-SECPEP	A375_MHC_IP_R2	2	557.7078247070312	2	557.30821	1112.60187	-0.74485	-0.00041511	-0.44654	-0.00024886	-1.1914	-0.00066397	557.3080275984541	76.236	0.55703	76.976	76.589	77.146	0.74052					19	10	3	0	0	0	0.13832	1	28968	28968		77.049	64.517	1	2888100			27280	3254	19519	19678	26728	26728					0.050069237196112226
KSVTAFFKW	9	Unmodified	_KSVTAFFKW_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MATCH	A375_MHC_IP_R1	1		3	371.874565	1112.60187	0.28844	0.00010726	-0.073782	-2.7438E-05	0.21465	7.9824E-05	372.20884254914637	77.209	0.60703	77.209	76.93	77.537	0	0.1255	0.00025157	NaN	6.6304	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1647700			27281	3254	19519	19678							0.050069237196112226
KSVTLGYLF	9	Unmodified	_KSVTLGYLF_					0	0	0		nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR;ENST00000530954.1_1_1:154558222-154560745:-|nuORF	nc|ENSG00000160710|P55265-3|ADAR	nc|ENSG00000160710|P55265-3|ADAR	MULTI-MSMS	A375_MHC_IP_R1	1	514.4971923828125	2	514.294768	1026.57498	-0.52156	-0.00026823	0.22399	0.0001152	-0.29757	-0.00015304	514.2948114945863	95.993	0.91496	95.993	95.665	96.58	0					53	17	5	0	0	0	0.035419	1	35271	35271		70.332	5.097	1	29953000			27282	6435	19520	19679	26729	26729					0.06275815108415372
KSVTLGYLF	9	Unmodified	_KSVTLGYLF_					0	0	0		nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR;ENST00000530954.1_1_1:154558222-154560745:-|nuORF	nc|ENSG00000160710|P55265-3|ADAR	nc|ENSG00000160710|P55265-3|ADAR	MULTI-MSMS	A375_MHC_IP_R2	2	515.19580078125	2	514.294768	1026.57498	-0.50346	-0.00025893	0.18823	9.6804E-05	-0.31523	-0.00016212	514.2948305517465	95.111	0.7626	95.862	95.483	96.246	0.75045					45	14	5	0	0	0	0.037683	1	36079	36079		69.105	3.8699	1	31714000			27283	6435	19520	19679	26730	26730					0.06275815108415372
KSVTVRVSDWT	11	Unmodified	_KSVTVRVSDWT_					0	0	0		ENSG00000221878|ENST00000406070|PSG7	ENSG00000221878|ENST00000406070|PSG7	ENSG00000221878|ENST00000406070|PSG7	MULTI-MSMS	A375_MHC_IP_R1	1	426.96661376953125	3	426.56646	1276.67755	-0.062984	-2.6867E-05	0.0705	3.0073E-05	0.0075161	3.2061E-06	426.5665662939223	33.747	0.45386	33.747	33.547	34.001	0					17	8	3	0	0	0	0.72964	1	11101	11101		9.2438	0.49199	1	1976200			27284	9668	19521	19680	26731	26731					0.05027856109222739
KSVTVRVSDWT	11	Unmodified	_KSVTVRVSDWT_					0	0	0		ENSG00000221878|ENST00000406070|PSG7	ENSG00000221878|ENST00000406070|PSG7	ENSG00000221878|ENST00000406070|PSG7	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	426.56646	1276.67755	-0.062984	-2.6867E-05	0.0705	3.0073E-05	0.0075161	3.2061E-06	426.5665662939223	33.747	0.45386	33.747	33.547	34.001	0	0.057742	0.00020598	NaN	9.2438	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1976200			27285	9668	19521	19680							0.05027856109222739
KSVTVRVSDWT	11	Unmodified	_KSVTVRVSDWT_					0	0	0		ENSG00000221878|ENST00000406070|PSG7	ENSG00000221878|ENST00000406070|PSG7	ENSG00000221878|ENST00000406070|PSG7	MULTI-MATCH	A375_MHC_IP_R2	2		3	426.56646	1276.67755	-0.25376	-0.00010825	-0.16953	-7.2316E-05	-0.42329	-0.00018056	426.56644402624255	32.895	0.50792	33.632	33.317	33.825	0.73692	-0.057742	-0.00010119	NaN	9.2438	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1826700			27286	9668	19521	19680							0.05027856109222739
KSWAKNKIF	9	Unmodified	_KSWAKNKIF_					0	0	0			REV__nc|ENSG00000111364|Q8NHQ9-2|DDX55	REV__nc|ENSG00000111364|Q8NHQ9-2|DDX55	MULTI-MSMS	A375_MHC_IP_R2	2	374.9535217285156	3	374.553715	1120.63931	0.17929	6.7153E-05	-0.84814	-0.00031767	-0.66885	-0.00025052	374.55350277055453	36.072	0.91649	36.838	36.438	37.354	0.76615					29	17	2	0	0	0	0.44024	1	13145	13145		16.566	3.6933	1	3510200	+		27287	17670	19522	19681	26732	26732					0.08382014985227215
KSWYLRLWNK	10	Unmodified	_KSWYLRLWNK_					0	0	0			REV__ENST00000539605.5_1_12:133331485-133331596:-|nuORF	REV__ENST00000539605.5_1_12:133331485-133331596:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	465.3349304199219	3	465.262823	1392.76664	-0.46839	-0.00021792	2.2033	0.0010251	1.7349	0.00080719	465.263461027848	131.98	0.30159	131.98	131.83	132.13	0					7	5	2	0	0	0	0.94707	1	50846	50846		0.56317	0	1	2493200	+		27288	25945	19523	19682	26733	26733					0.08596735859396176
KSYAGYQTL	9	Unmodified	_KSYAGYQTL_					0	0	0		nc|ENSG00000005893|P13473-2|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1633911132812	2	515.763832	1029.51311	-0.83681	-0.0004316	0.18405	9.4928E-05	-0.65276	-0.00033667	515.7638633929163	36.697	0.80931	36.697	36.389	37.198	0					42	15	4	0	0	0	0.20451	1	12252	12252		49.554	3.5333	1	58504000			27289	14449	19524	19683	26734	26734					-0.00046536310719602625
KSYAGYQTL	9	Unmodified	_KSYAGYQTL_					0	0	0		nc|ENSG00000005893|P13473-2|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	MULTI-SECPEP	A375_MHC_IP_R2	2	516.1633911132812	2	515.763832	1029.51311	-0.92434	-0.00047674	0.26253	0.0001354	-0.66181	-0.00034134	515.7639112782515	35.85	0.71503	36.613	36.333	37.048	0.76338					44	13	5	0	0	0	0.05217	1	12982	12982		79.596	7.674	1	85072000			27290	14449	19524	19683	26735	26735					-0.00046536310719602625
KSYELIRKI	9	Unmodified	_KSYELIRKI_					0	0	0		nc|ENSG00000100605|Q13572-2|ITPK1;ENSG00000100605|ENST00000267615|ITPK1	nc|ENSG00000100605|Q13572-2|ITPK1	nc|ENSG00000100605|Q13572-2|ITPK1	MULTI-MSMS	A375_MHC_IP_R1	1	384.304443359375	3	383.904524	1148.69174	0.14992	5.7553E-05	-0.051858	-1.9909E-05	0.098057	3.7645E-05	383.90450032652734	33.014	0.81018	33.014	32.634	33.445	0					28	15	3	0	0	0	0.50355	2	10732	10713;10732		19.626	2.0954	1	7308900			27291	2202	19525	19684	26736;26737	26737					0.12334553328196307
KSYELIRKI	9	Unmodified	_KSYELIRKI_					0	0	0		nc|ENSG00000100605|Q13572-2|ITPK1;ENSG00000100605|ENST00000267615|ITPK1	nc|ENSG00000100605|Q13572-2|ITPK1	nc|ENSG00000100605|Q13572-2|ITPK1	MULTI-MSMS	A375_MHC_IP_R2	2	384.3045959472656	3	383.904524	1148.69174	-0.11989	-4.6027E-05	0.46277	0.00017766	0.34288	0.00013163	383.90466345972305	32.136	0.60735	32.872	32.555	33.162	0.73691					14	9	2	0	0	0	0.11176	1	11370	11370		48.561	8.6379	1	8474600			27292	2202	19525	19684	26738	26738					0.12334553328196307
KSYELPDGQVI	11	Unmodified	_KSYELPDGQVI_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	A375_MHC_IP_R1	1	624.6771850585938	2	624.82716	1247.63977	-0.38273	-0.00023914	-0.1975	-0.0001234	-0.58023	-0.00036254	624.8270093093911	71.285	0.66171	71.285	70.953	71.615	0					31	12	4	0	0	0	0.23491	2	25987	25865;25987		51.765	20.497	1	8176000			27293	1615;5418;9064	19526	19685	26739;26740	26740					0.02585345123748084
KSYFSQKW	8	Unmodified	_KSYFSQKW_					0	0	0		nc|ENSG00000149970|Q8WXI2-4|CNKSR2;nc|ENSG00000149970|Q8WXI2-2|CNKSR2;nc|ENSG00000149970|Q8WXI2-5|CNKSR2;ENSG00000149970|ENST00000379510|CNKSR2	nc|ENSG00000149970|Q8WXI2-4|CNKSR2	nc|ENSG00000149970|Q8WXI2-4|CNKSR2	MULTI-SECPEP	A375_MHC_IP_R1	1	537.2216186523438	2	537.274367	1072.53418	-0.47257	-0.0002539	0.044421	2.3866E-05	-0.42815	-0.00023003	537.2744361580193	39.246	0.30574	39.246	38.983	39.289	0					7	5	2	0	0	0	0.972	1	13341	13341		9.3831	3.6513	1	2687900			27294	5835	19527	19686	26741	26741					0.0008147378882767953
KSYGNEKRFF	10	Unmodified	_KSYGNEKRFF_					0	0	0		ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ;ENST00000511451.5_1_4:26364233-26422385:+|nuORF;nc|ENSG00000124232|Q9UBG7-2|RBPJL;ENSG00000124232|ENST00000343694|RBPJL	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	426.28753662109375	3	425.887533	1274.64077	-0.37495	-0.00015969	0.58157	0.00024769	0.20662	8.7999E-05	425.8876610398263	25.912	0.50706	25.912	25.714	26.221	0					20	9	3	0	0	0	0.45806	1	7697	7697		32.616	16.342	1	2568000			27295	7274	19528	19687	26742	26742					0.01443604283304012
KSYGNEKRFF	10	Unmodified	_KSYGNEKRFF_					0	0	0		ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ;ENST00000511451.5_1_4:26364233-26422385:+|nuORF;nc|ENSG00000124232|Q9UBG7-2|RBPJL;ENSG00000124232|ENST00000343694|RBPJL	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	426.28692626953125	3	425.887533	1274.64077	-0.60971	-0.00025967	0.19234	8.1915E-05	-0.41738	-0.00017776	425.88741459357027	25.307	0.45911	25.95	25.668	26.128	0.64368					17	8	3	0	0	0	0.10198	1	8455	8455		55.467	46.223	1	6864500			27296	7274	19528	19687	26743	26743					0.01443604283304012
KSYLGSEADVW	11	Unmodified	_KSYLGSEADVW_					0	0	0		nc|ENSG00000165304|Q14680-4|MELK;nc|ENSG00000165304|Q14680-5|MELK;nc|ENSG00000165304|Q14680-2|MELK;nc|ENSG00000165304|Q14680-8|MELK;nc|ENSG00000165304|Q14680-7|MELK;nc|ENSG00000165304|Q14680-6|MELK;ENSG00000165304|ENST00000298048|MELK	nc|ENSG00000165304|Q14680-4|MELK	nc|ENSG00000165304|Q14680-4|MELK	MULTI-SECPEP	A375_MHC_IP_R1	1	627.2002563476562	2	627.803685	1253.59282	-0.50031	-0.0003141	0.74457	0.00046745	0.24427	0.00015335	627.8037747087124	71.005	0.76702	71.005	70.648	71.415	0					29	14	3	0	0	0	0.30148	1	25798	25798		53.47	29.68	1	8823800			27297	6939	19529	19688	26744	26744					-0.02383514427378941
KSYLGSEADVW	11	Unmodified	_KSYLGSEADVW_					0	0	0		nc|ENSG00000165304|Q14680-4|MELK;nc|ENSG00000165304|Q14680-5|MELK;nc|ENSG00000165304|Q14680-2|MELK;nc|ENSG00000165304|Q14680-8|MELK;nc|ENSG00000165304|Q14680-7|MELK;nc|ENSG00000165304|Q14680-6|MELK;ENSG00000165304|ENST00000298048|MELK	nc|ENSG00000165304|Q14680-4|MELK	nc|ENSG00000165304|Q14680-4|MELK	MULTI-SECPEP	A375_MHC_IP_R2	2	628.202880859375	2	627.803685	1253.59282	-0.7716	-0.00048441	0.52101	0.00032709	-0.25059	-0.00015732	627.8035795980707	70.333	0.81051	71.067	70.642	71.453	0.73421					33	15	3	0	0	0	0.82343	1	26648	26648		36.395	20.548	1	9568300			27298	6939	19529	19688	26745	26745					-0.02383514427378941
KSYLMNRL	8	Unmodified	_KSYLMNRL_					0	0	0		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-SECPEP	A375_MHC_IP_R1	1	513.1839599609375	2	512.784044	1023.55354	-0.30007	-0.00015387	-0.14392	-7.3801E-05	-0.44399	-0.00022767	512.7839933535206	39.213	0.55851	39.213	38.983	39.541	0					25	10	3	0	0	0	0.32469	1	13365	13365		74.929	34.972	1	18572000			27299	6573	19530	19689	26746	26746					0.04270106808053242
KSYLMNRL	8	Unmodified	_KSYLMNRL_					0	0	0		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-SECPEP	A375_MHC_IP_R2	2	513.18359375	2	512.784044	1023.55354	-1.0603	-0.00054369	0.097428	4.996E-05	-0.96283	-0.00049373	512.7841491214705	38.178	0.7142	38.953	38.687	39.401	0.77451					31	13	4	0	0	0	0.47399	1	14001	14001		57.722	25.416	1	20542000			27300	6573	19530	19689	26747	26747					0.04270106808053242
KSYLMNRL	8	Oxidation (M)	_KSYLM(Oxidation (M))NRL_		KSYLM(1)NRL		KSYLM(44)NRL	0	0	1		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-SECPEP	A375_MHC_IP_R1	1	521.1809692382812	2	520.781502	1039.54845	-0.55077	-0.00028683	-0.48156	-0.00025079	-1.0323	-0.00053762	520.7813841253037	28.285	1.3158	28.285	28.037	29.353	0					65	25	4	0	0	0	0.68299	1	8670	8670		43.772	13.932	1	20057000			27301	6573	19530	19690	26748	26748		350			0.03025802945421674
KSYQSFQTF	9	Unmodified	_KSYQSFQTF_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	A375_MHC_IP_R1	1	568.673583984375	2	568.274564	1134.53457	-0.36041	-0.00020481	-2.8457	-0.0016171	-3.2061	-0.0018219	568.2738747081644	50.35	0.61388	50.35	50.049	50.663	0					27	11	4	0	0	0	0.029064	1	17837	17837		75.761	21.928	1	4321200			27302	1649	19531	19691	26749	26749					-0.0273115128200061
KSYQSFQTF	9	Unmodified	_KSYQSFQTF_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	A375_MHC_IP_R2	2	568.7028198242188	2	568.274564	1134.53457	-0.65034	-0.00036957	-1.1519	-0.00065457	-1.8022	-0.0010241	568.2744018739043	49.523	0.50638	50.28	50.096	50.602	0.75736					22	9	3	0	0	0	0.015356	2	18611	18611;18652		89.401	26.828	1	4462000			27303	1649	19531	19691	26750;26751	26750					-0.0273115128200061
KSYSKAFTL	9	Unmodified	_KSYSKAFTL_					0	0	0		nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP;ENST00000472031.1_1_17:40118826-40125939:+|nuORF;ENST00000486438.1_1_17:40123824-40125939:+|nuORF	nc|ENSG00000173786|P09543-2|CNP	nc|ENSG00000173786|P09543-2|CNP	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1895751953125	2	522.78985	1043.56515	-0.73135	-0.00038234	-0.058034	-3.034E-05	-0.78939	-0.00041268	522.7898296619979	35.849	0.50905	36.612	36.333	36.842	0.76338					17	9	2	0	0	0	0.23313	1	13044	13044		42.312	7.9108	1	11893000			27304	7829	19532	19692	26752	26752					0.04510627103036313
KSYSSQVLF	9	Unmodified	_KSYSSQVLF_					0	0	0		nc|ENSG00000104691|O00124-2|UBXN8;nc|ENSG00000104691|O00124-3|UBXN8;nc|ENSG00000104691|O00124|UBXN8;ENSG00000104691|ENST00000265616|UBXN8	nc|ENSG00000104691|O00124-2|UBXN8	nc|ENSG00000104691|O00124-2|UBXN8	MULTI-SECPEP	A375_MHC_IP_R2	2	529.6929321289062	2	529.779482	1057.54441	-0.93434	-0.00049499	-0.012583	-6.6661E-06	-0.94692	-0.00050166	529.7794494513014	56.401	0.61206	57.151	56.898	57.51	0.75015					15	11	2	0	0	0	0.39388	1	21333	21333		39.957	9.7325	1	2113700			27305	2526	19533	19693	26753	26753					0.017940367233904908
KSYSTFESW	9	Unmodified	_KSYSTFESW_					0	0	0			REV__ENST00000432584.7_1_12:48095358-48099789:-|nuORF	REV__ENST00000432584.7_1_12:48095358-48099789:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	568.1871337890625	2	567.758746	1133.50294	-0.71307	-0.00040485	-0.25843	-0.00014673	-0.9715	-0.00055158	567.7584977371729	58.767	1.0687	59.514	58.827	59.896	0.74714					34	20	2	0	0	0	0.61998	1	22312	22312		13.906	1.6654	1	2040100	+		27306	24718	19534	19694	26754	26754					-0.0584714403594262
KSYYVIYFELE	11	Unmodified	_KSYYVIYFELE_					0	0	0		nc|ENSG00000151687|Q7Z5J8-2|ANKAR;ENSG00000151687|ENST00000684021|ANKAR;nc|ENSG00000151687|Q7Z5J8-4|ANKAR;nc|ENSG00000151687|Q7Z5J8-3|ANKAR	nc|ENSG00000151687|Q7Z5J8-2|ANKAR	nc|ENSG00000151687|Q7Z5J8-2|ANKAR	MULTI-SECPEP	A375_MHC_IP_R2	2	485.6543273925781	3	485.246504	1452.71768	-0.56985	-0.00027652	0.90573	0.0004395	0.33588	0.00016299	485.91484083719024	131.95	0.86166	132.14	131.65	132.51	0.18954					36	16	4	0	0	0	0.99945	1	51757	51757		4.1166	0	1	3544500			27307	5919	19535	19695	26755	26755					0.009433579891492627
KTAEFQMTF	9	Unmodified	_KTAEFQMTF_					0	0	0		nc|ENSG00000123560|P60201-2|PLP1;ENSG00000123560|ENST00000621218|PLP1	nc|ENSG00000123560|P60201-2|PLP1	nc|ENSG00000123560|P60201-2|PLP1	MULTI-SECPEP	A375_MHC_IP_R2	2	552.16552734375	2	551.765517	1101.51648	-0.9591	-0.0005292	-0.74234	-0.0004096	-1.7014	-0.00093879	551.7655555850455	72.244	0.65806	72.979	72.618	73.276	0.73421					19	12	2	0	0	0	0.40377	1	27494	27494		34.932	2.1464	1	1898300			27308	3853	19536	19696	26756	26756					-0.030216095283549294
KTAENFRQF	9	Unmodified	_KTAENFRQF_					0	0	0		ENSG00000171960|ENST00000304979|PPIH	ENSG00000171960|ENST00000304979|PPIH	ENSG00000171960|ENST00000304979|PPIH	MULTI-MSMS	A375_MHC_IP_R1	1	571.1932983398438	2	570.793455	1139.57236	-0.38365	-0.00021898	0.0092457	5.2774E-06	-0.3744	-0.0002137	570.793435616084	27.287	0.45563	27.287	27.078	27.533	0					20	8	3	0	0	0	0.008387	1	8264	8264		139.78	64.021	1	7182000			27309	7665	19537	19697	26757	26757					0.008153597034606719
KTAENFRQF	9	Unmodified	_KTAENFRQF_					0	0	0		ENSG00000171960|ENST00000304979|PPIH	ENSG00000171960|ENST00000304979|PPIH	ENSG00000171960|ENST00000304979|PPIH	MULTI-MSMS	A375_MHC_IP_R1	1	381.2648010253906	3	380.864729	1139.57236	0.24566	9.3564E-05	-0.02494	-9.4987E-06	0.22072	8.4065E-05	380.86468808616735	27.25	0.4048	27.25	27.078	27.482	0					18	7	3	0	0	0	0.021859	1	8265	8265		81.915	48.47	1	9264600			27310	7665	19537	19697	26758	26758					0.008153597034606719
KTAENFRQF	9	Unmodified	_KTAENFRQF_					0	0	0		ENSG00000171960|ENST00000304979|PPIH	ENSG00000171960|ENST00000304979|PPIH	ENSG00000171960|ENST00000304979|PPIH	MULTI-MSMS	A375_MHC_IP_R2	2	381.2646179199219	3	380.864729	1139.57236	-0.37449	-0.00014263	0.43546	0.00016585	0.060963	2.3219E-05	380.86499259356896	26.595	0.56025	27.255	27.008	27.568	0.65992					20	8	3	0	0	0	0.10518	2	9043	8982;9043		49.742	30.116	1	8824400			27311	7665	19537	19697	26759;26760	26760					0.008153597034606719
KTAENFRQF	9	Unmodified	_KTAENFRQF_					0	0	0		ENSG00000171960|ENST00000304979|PPIH	ENSG00000171960|ENST00000304979|PPIH	ENSG00000171960|ENST00000304979|PPIH	MULTI-SECPEP	A375_MHC_IP_R2	2	571.193115234375	2	570.793455	1139.57236	-0.65583	-0.00037434	0.050531	2.8843E-05	-0.60529	-0.0003455	570.7934462303899	26.622	0.408	27.282	27.109	27.517	0.65992					19	7	3	0	0	0	0.012524	1	9025	9025		93.938	29.978	1	7579500			27312	7665	19537	19697	26761	26761					0.008153597034606719
KTAGKPILF	9	Unmodified	_KTAGKPILF_					0	0	0		nc|ENSG00000113163|Q9Y5P4-2|CERT1;ENSG00000113163|ENST00000643780|CERT1;nc|ENSG00000113163|Q9Y5P4-3|CERT1	nc|ENSG00000113163|Q9Y5P4-2|CERT1	nc|ENSG00000113163|Q9Y5P4-2|CERT1	MULTI-SECPEP	A375_MHC_IP_R1	1	488.2051696777344	2	487.805303	973.596052	-0.11553	-5.6356E-05	-0.13205	-6.4414E-05	-0.24758	-0.00012077	487.80519633317095	39.213	0.45832	39.213	38.983	39.441	0					15	8	3	0	0	0	0.13244	1	13411	13411		67.838	22.139	1	3863000			27313	3129	19538	19698	26762	26762					0.10819825207943268
KTAGKPILF	9	Unmodified	_KTAGKPILF_					0	0	0		nc|ENSG00000113163|Q9Y5P4-2|CERT1;ENSG00000113163|ENST00000643780|CERT1;nc|ENSG00000113163|Q9Y5P4-3|CERT1	nc|ENSG00000113163|Q9Y5P4-2|CERT1	nc|ENSG00000113163|Q9Y5P4-2|CERT1	MULTI-SECPEP	A375_MHC_IP_R2	2	488.2048645019531	2	487.805303	973.596052	-0.8761	-0.00042737	0.1559	7.6046E-05	-0.7202	-0.00035132	487.8052952473061	38.197	0.35918	38.971	38.739	39.098	0.77451					13	6	3	0	0	0	0.10362	1	14051	14051		63.961	10.128	1	3979200			27314	3129	19538	19698	26763	26763					0.10819825207943268
KTAGLDALDA	10	Unmodified	_KTAGLDALDA_					0	0	0			REV__ENSG00000138080|ENST00000380320|EMILIN1	REV__ENSG00000138080|ENST00000380320|EMILIN1	MULTI-SECPEP	A375_MHC_IP_R1	1	488.2051696777344	2	487.761289	973.508025	-0.10436	-5.0903E-05	1.903	0.00092821	1.7986	0.0008773	487.761937614788	39.213	0.30647	39.213	39.085	39.391	0					6	5	2	0	0	0	0.90144	1	13411	13411		18.373	2.5259	1	796900	+		27315	19062	19539	19699	26764	26764					0.02021159826654184
KTALHWAV	8	Unmodified	_KTALHWAV_					0	0	0		ENSG00000164512|ENST00000341048|ANKRD55	ENSG00000164512|ENST00000341048|ANKRD55	ENSG00000164512|ENST00000341048|ANKRD55	MULTI-MSMS	A375_MHC_IP_R2	2	925.5284423828125	1	925.525413	924.518136	-0.10012	-9.2668E-05	-1.0125	-0.0009371	-1.1126	-0.0010298	925.5258558991478	114.61	1.9265	115.3	114.46	116.39	0.68999					55	37	3	0	0	0	0.77675	1	43310	43310		6.7232	1.4925	1	12442000			27316	6846	19540	19700	26765	26765					0.05285812342560803
KTALHWAV	8	Unmodified	_KTALHWAV_					0	0	0		ENSG00000164512|ENST00000341048|ANKRD55	ENSG00000164512|ENST00000341048|ANKRD55	ENSG00000164512|ENST00000341048|ANKRD55	MULTI-MATCH	A375_MHC_IP_R1	1		1	925.525413	924.518136	0.37004	0.00034248	-0.17481	-0.00016179	0.19524	0.0001807	925.526281022414	114.93	1.2185	114.93	114.41	115.63	0	-0.18446	0.0005271	NaN	6.7232	32	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12649000			27317	6846	19540	19700							0.05285812342560803
KTALLHVF	8	Unmodified	_KTALLHVF_					0	0	0		ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	MULTI-SECPEP	A375_MHC_IP_R1	1	465.18402099609375	2	464.78437	927.554188	-0.30398	-0.00014128	-0.83398	-0.00038762	-1.138	-0.00052891	464.78392464256183	58.811	0.50922	58.811	58.481	58.99	0					14	9	2	0	0	0	0.10358	1	21151	21151		64.236	15.89	1	1547500			27318	3355	19541	19701	26766	26766					0.08751269519427751
KTALLHVF	8	Unmodified	_KTALLHVF_					0	0	0		ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	MULTI-SECPEP	A375_MHC_IP_R2	2	465.1839294433594	2	464.78437	927.554188	-0.92953	-0.00043203	0.22015	0.00010232	-0.70938	-0.00032971	464.7843575925458	57.64	0.35707	58.389	58.17	58.528	0.74895					11	6	2	0	0	0	0.73227	1	21829	21829		30.637	5.2372	1	2072300			27319	3355	19541	19701	26767	26767					0.08751269519427751
KTARRVRLK	9	Unmodified	_KTARRVRLK_					0	0	0			REV__nc|ENSG00000138002|Q9UG01-3|IFT172	REV__nc|ENSG00000138002|Q9UG01-3|IFT172	MULTI-SECPEP	A375_MHC_IP_R2	2	1127.81787109375	1	1127.74837	1126.74109	0.33661	0.00037962	-1.1443	-0.0012905	-0.80771	-0.00091089	1128.7499448558078	112.46	0.76402	113.19	112.71	113.48	0.72458					17	14	2	0	0	0	0.75164	1	42466	42466		9.3831	1.2276	1	3331300	+		27320	27253	19542	19702	26768	26768					0.18279306127647033
KTATHAVVF	9	Unmodified	_KTATHAVVF_					0	0	0		ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENSG00000087008|ENST00000356406|ACOX3	ENSG00000087008|ENST00000356406|ACOX3	MULTI-SECPEP	A375_MHC_IP_R1	1	487.6768798828125	2	487.276909	972.539266	-0.46635	-0.00022724	0.18394	8.9629E-05	-0.28241	-0.00013761	487.2769338748038	28.006	0.60399	28.006	27.735	28.339	0					21	11	3	0	0	0	0.16676	1	8592	8592		34.402	15.145	1	7503500			27321	1849	19543	19703	26769	26769					0.0518977765142381
KTATHAVVF	9	Unmodified	_KTATHAVVF_					0	0	0		ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENSG00000087008|ENST00000356406|ACOX3	ENSG00000087008|ENST00000356406|ACOX3	MULTI-SECPEP	A375_MHC_IP_R2	2	487.6765441894531	2	487.276909	972.539266	-0.54994	-0.00026797	0.19013	9.2645E-05	-0.35981	-0.00017533	487.27695017240217	27.241	0.45872	27.92	27.741	28.2	0.67857					19	8	3	0	0	0	0.27742	1	9323	9323		36.506	11.832	1	3943000			27322	1849	19543	19703	26770	26770					0.0518977765142381
KTCVNYVAQ	9	Unmodified	_KTCVNYVAQ_					0	0	0		ENST00000466901.5_1_2:232653280-232656595:+|nuORF	ENST00000466901.5_1_2:232653280-232656595:+|nuORF	ENST00000466901.5_1_2:232653280-232656595:+|nuORF	MSMS	A375_MHC_IP_R2	2	513.1943359375	2	513.257859	1024.50117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.856	1	38.631	38.131	39.131	0.77451								0	0	0	0.15142	1	13886	13886		19.257	1.122	1				27323	12267	19544	19704	26771	26771					-0.010104763255640137
KTDFHENE	8	Unmodified	_KTDFHENE_					0	0	0		MROH2B|p.N417D|1|0.5|ENSG00000171495|chr5:41051072-41051072|T/C|missense_variant	MROH2B|p.N417D|1|0.5|ENSG00000171495|chr5:41051072-41051072|T/C|missense_variant	MROH2B|p.N417D|1|0.5|ENSG00000171495|chr5:41051072-41051072|T/C|missense_variant	MSMS	A375_MHC_IP_R2	2	510.1997985839844	2	510.225071	1018.43559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.643	1	41.417	40.917	41.917	0.77451								0	0	0	0.16876	1	15056	15056		7.9102	0	1				27324	14401	19545	19705	26772	26772					-0.07289174246898256
KTDGSFIGY	9	Unmodified	_KTDGSFIGY_					0	0	0		nc|ENSG00000117020|Q9Y243-2|AKT3;ENSG00000117020|ENST00000673466|AKT3	nc|ENSG00000117020|Q9Y243-2|AKT3	nc|ENSG00000117020|Q9Y243-2|AKT3	MULTI-MSMS	A375_MHC_IP_R1	1	494.6545104980469	2	494.242732	986.470912	-0.358	-0.00017694	0.073305	3.6231E-05	-0.2847	-0.00014071	494.2427722907277	50.279	2.2917	50.279	49.793	52.085	0					114	44	5	0	0	0	0.024574	1	17916	17916		79.596	11.516	1	335520000			27325	3452	19546	19706	26773	26773					-0.022865117190917772
KTDGSFIGY	9	Unmodified	_KTDGSFIGY_					0	0	0		nc|ENSG00000117020|Q9Y243-2|AKT3;ENSG00000117020|ENST00000673466|AKT3	nc|ENSG00000117020|Q9Y243-2|AKT3	nc|ENSG00000117020|Q9Y243-2|AKT3	MULTI-MSMS	A375_MHC_IP_R2	2	494.6425476074219	2	494.242732	986.470912	-0.77601	-0.00038354	0.20765	0.00010263	-0.56835	-0.0002809	494.2428344345332	49.514	2.0772	50.271	49.792	51.869	0.75737					113	40	5	0	0	0	0.032333	2	18725	18725;18757		72.968	11.653	1	426560000			27326	3452	19546	19706	26774;26775	26774					-0.022865117190917772
KTDGSFLVH	9	Unmodified	_KTDGSFLVH_					0	0	0		ENST00000483205.1_1_3:47551637-47555080:-|nuORF;ENST00000485029.5_1_3:47545746-47555080:-|nuORF;nc|ENSG00000163832|Q0PNE2-2|ELP6;ENSG00000163832|ENST00000296149|ELP6	ENST00000483205.1_1_3:47551637-47555080:-|nuORF	ENST00000483205.1_1_3:47551637-47555080:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.66387939453125	2	502.263999	1002.51345	-0.58171	-0.00029217	-1.1577	-0.00058148	-1.7394	-0.00087366	502.2639690295045	30.983	0.7074	30.983	30.453	31.16	0					18	13	2	0	0	0	0.59098	1	9907	9907		16.149	6.766	1	6343500			27327	6732	19547	19707	26776	26776					0.012288834091464196
KTDHFIFTY	9	Unmodified	_KTDHFIFTY_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	A375_MHC_IP_R1	1	391.5977783203125	3	391.197596	1170.57096	0.053526	2.0939E-05	0.46865	0.00018334	0.52218	0.00020428	391.1977388656116	65.13	0.71384	65.13	64.851	65.565	0					44	13	4	0	0	0	0.46357	1	23541	23541		21.59	21.59	1	21342000			27328	3385	19548	19708	26777	26777					-0.007502743852683125
KTDHFIFTY	9	Unmodified	_KTDHFIFTY_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-SECPEP	A375_MHC_IP_R1	1	586.6925659179688	2	586.292756	1170.57096	-0.35968	-0.00021088	0.31982	0.00018751	-0.039856	-2.3367E-05	586.292778328441	65.156	0.96812	65.156	64.851	65.819	0					43	18	4	0	0	0	0.010039	1	23561	23561		136.39	82.559	1	15664000			27329	3385	19548	19708	26778	26778					-0.007502743852683125
KTDHFIFTY	9	Unmodified	_KTDHFIFTY_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	A375_MHC_IP_R2	2	391.5975646972656	3	391.197596	1170.57096	-0.098435	-3.8508E-05	0.23601	9.2325E-05	0.13757	5.3818E-05	391.19763534555346	64.286	0.81499	65.026	64.648	65.463	0.74023					42	15	4	0	0	0	0.18338	1	24321	24321		39.213	22.647	1	20830000			27330	3385	19548	19708	26779	26779					-0.007502743852683125
KTDHFIFTY	9	Unmodified	_KTDHFIFTY_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-SECPEP	A375_MHC_IP_R2	2	586.6923217773438	2	586.292756	1170.57096	-0.4603	-0.00026987	-0.083183	-4.877E-05	-0.54349	-0.00031864	586.2926049010093	64.284	0.66207	65.025	64.699	65.361	0.74022					37	12	4	0	0	0	0.010039	1	24359	24359		125.04	79.338	1	15804000			27331	3385	19548	19708	26780	26780					-0.007502743852683125
KTDKRIFTF	9	Unmodified	_KTDKRIFTF_					0	0	0		nc|ENSG00000144366|Q9UBP9-2|GULP1;nc|ENSG00000144366|Q9UBP9-4|GULP1;ENSG00000144366|ENST00000409830|GULP1	nc|ENSG00000144366|Q9UBP9-2|GULP1	nc|ENSG00000144366|Q9UBP9-2|GULP1	MULTI-MSMS	A375_MHC_IP_R1	1	386.28887939453125	3	385.888874	1154.64479	0.33532	0.0001294	-0.14799	-5.7109E-05	0.18732	7.2286E-05	385.88883989164617	40.68	1.2161	40.68	40.355	41.571	0					69	23	5	0	0	0	0.41856	1	14172	14172		23.801	2.2109	1	318170000			27332	5480	19549	19709	26781	26781					0.07365693777023807
KTDKRIFTF	9	Unmodified	_KTDKRIFTF_					0	0	0		nc|ENSG00000144366|Q9UBP9-2|GULP1;nc|ENSG00000144366|Q9UBP9-4|GULP1;ENSG00000144366|ENST00000409830|GULP1	nc|ENSG00000144366|Q9UBP9-2|GULP1	nc|ENSG00000144366|Q9UBP9-2|GULP1	MULTI-SECPEP	A375_MHC_IP_R1	1	578.7296752929688	2	578.329673	1154.64479	-0.097668	-5.6484E-05	-0.095383	-5.5163E-05	-0.19305	-0.00011165	578.3295567314719	40.685	0.65689	40.685	40.406	41.063	0					37	12	4	0	0	0	0.010905	1	13965	13965		139.78	64.021	1	38472000			27333	5480	19549	19709	26782	26782					0.07365693777023807
KTDKRIFTF	9	Unmodified	_KTDKRIFTF_					0	0	0		nc|ENSG00000144366|Q9UBP9-2|GULP1;nc|ENSG00000144366|Q9UBP9-4|GULP1;ENSG00000144366|ENST00000409830|GULP1	nc|ENSG00000144366|Q9UBP9-2|GULP1	nc|ENSG00000144366|Q9UBP9-2|GULP1	MULTI-MSMS	A375_MHC_IP_R2	2	386.2889099121094	3	385.888874	1154.64479	-0.16603	-6.4069E-05	0.14893	5.747E-05	-0.0171	-6.5985E-06	385.8889648434324	39.673	1.5743	40.448	40.118	41.692	0.77451					82	30	5	0	0	0	0.048392	1	14598	14598		64.927	18.904	1	380770000			27334	5480	19549	19709	26783	26783					0.07365693777023807
KTDKRIFTF	9	Unmodified	_KTDKRIFTF_					0	0	0		nc|ENSG00000144366|Q9UBP9-2|GULP1;nc|ENSG00000144366|Q9UBP9-4|GULP1;ENSG00000144366|ENST00000409830|GULP1	nc|ENSG00000144366|Q9UBP9-2|GULP1	nc|ENSG00000144366|Q9UBP9-2|GULP1	MULTI-MSMS	A375_MHC_IP_R2	2	578.7296752929688	2	578.329673	1154.64479	-0.25065	-0.00014496	-0.039485	-2.2835E-05	-0.29014	-0.0001678	578.3295931090053	39.667	0.55804	40.442	40.169	40.727	0.77451					35	10	4	0	0	0	0.008387	1	14629	14629		151.48	75.719	1	37297000			27335	5480	19549	19709	26784	26784					0.07365693777023807
KTDKTLVLL	9	Unmodified	_KTDKTLVLL_					0	0	0		ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	MULTI-SECPEP	A375_MHC_IP_R1	1	515.6854248046875	2	515.828975	1029.6434	-0.39425	-0.00020337	-0.13657	-7.0447E-05	-0.53082	-0.00027381	515.8288572987228	54.389	0.9115	54.389	54.013	54.924	0					49	17	4	0	0	0	0.042716	1	19401	19401		96.367	14.476	1	71967000			27336	2810	19550	19710	26785	26785					0.1297605968827611
KTDKTLVLL	9	Unmodified	_KTDKTLVLL_					0	0	0		ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	MULTI-SECPEP	A375_MHC_IP_R2	2	516.2283935546875	2	515.828975	1029.6434	-1.3568	-0.0006999	0.67261	0.00034695	-0.68423	-0.00035294	515.8292751743165	53.32	0.81806	54.071	53.739	54.557	0.75105					45	15	4	0	0	0	0.025037	1	20061	20061		110.55	33.728	1	70845000			27337	2810	19550	19710	26786	26786					0.1297605968827611
KTDLDLDGY	9	Unmodified	_KTDLDLDGY_					0	0	0		nc|ENSG00000127527|Q9UBC2-4|EPS15L1;nc|ENSG00000127527|Q9UBC2-3|EPS15L1;nc|ENSG00000127527|Q9UBC2|EPS15L1;ENSG00000127527|ENST00000455140|EPS15L1	nc|ENSG00000127527|Q9UBC2-4|EPS15L1	nc|ENSG00000127527|Q9UBC2-4|EPS15L1	MULTI-MSMS	A375_MHC_IP_R1	1	520.6505126953125	2	520.250754	1038.48696	-0.40747	-0.00021199	0.044246	2.3019E-05	-0.36323	-0.00018897	520.250745897605	56.624	0.91585	56.624	56.347	57.263	0					34	17	3	0	0	0	0.12748	2	20252	20252;20378		45.74	7.7659	1	17493000			27338	4096	19551	19711	26787;26788	26787					-0.03074850272855656
KTDLDLDGY	9	Unmodified	_KTDLDLDGY_					0	0	0		nc|ENSG00000127527|Q9UBC2-4|EPS15L1;nc|ENSG00000127527|Q9UBC2-3|EPS15L1;nc|ENSG00000127527|Q9UBC2|EPS15L1;ENSG00000127527|ENST00000455140|EPS15L1	nc|ENSG00000127527|Q9UBC2-4|EPS15L1	nc|ENSG00000127527|Q9UBC2-4|EPS15L1	MULTI-MSMS	A375_MHC_IP_R2	2	520.6505126953125	2	520.250754	1038.48696	-0.82018	-0.0004267	0.097393	5.0669E-05	-0.72279	-0.00037603	520.2507748444893	55.917	0.76437	56.667	56.388	57.152	0.75015					34	14	3	0	0	0	0.017727	1	21096	21096		86.332	31.558	1	18355000			27339	4096	19551	19711	26789	26789					-0.03074850272855656
KTDLTYRIL	9	Unmodified	_KTDLTYRIL_					0	0	0		ENSG00000099953|ENST00000215743|MMP11	ENSG00000099953|ENST00000215743|MMP11	ENSG00000099953|ENST00000215743|MMP11	MULTI-MSMS	A375_MHC_IP_R2	2	375.28875732421875	3	374.888763	1121.64446	0.37787	0.00014166	-0.41565	-0.00015582	-0.037785	-1.4165E-05	374.88856692154553	42.369	0.61217	43.141	42.91	43.523	0.7724					31	11	4	0	0	0	0.11638	1	15750	15750		47.732	3.7501	1	19064000			27340	2095	19552	19712	26790	26790					0.08850274057181196
KTDPLSLEGY	10	Unmodified	_KTDPLSLEGY_					0	0	0		nc|ENSG00000126217|O15068-6|MCF2L;nc|ENSG00000126217|O15068-8|MCF2L;nc|ENSG00000126217|O15068-10|MCF2L;ENSG00000126217|ENST00000535094|MCF2L;nc|ENSG00000126217|O15068|MCF2L;nc|ENSG00000126217|O15068-5|MCF2L;nc|ENSG00000126217|O15068-4|MCF2L;nc|ENSG00000126217|O15068-3|MCF2L;nc|ENSG00000126217|O15068-2|MCF2L	nc|ENSG00000126217|O15068-6|MCF2L	nc|ENSG00000126217|O15068-6|MCF2L	MULTI-SECPEP	A375_MHC_IP_R1	1	562.1875610351562	2	561.787504	1121.56045	-0.76638	-0.00043054	0.4463	0.00025073	-0.32008	-0.00017982	561.7878464421078	67.271	0.56168	67.271	66.938	67.5	0					14	10	2	0	0	0	0.62699	1	24410	24410		42.312	9.5268	1	1677800			27341	4030	19553	19713	26791	26791					0.004536981696446674
KTDPLSLEGY	10	Unmodified	_KTDPLSLEGY_					0	0	0		nc|ENSG00000126217|O15068-6|MCF2L;nc|ENSG00000126217|O15068-8|MCF2L;nc|ENSG00000126217|O15068-10|MCF2L;ENSG00000126217|ENST00000535094|MCF2L;nc|ENSG00000126217|O15068|MCF2L;nc|ENSG00000126217|O15068-5|MCF2L;nc|ENSG00000126217|O15068-4|MCF2L;nc|ENSG00000126217|O15068-3|MCF2L;nc|ENSG00000126217|O15068-2|MCF2L	nc|ENSG00000126217|O15068-6|MCF2L	nc|ENSG00000126217|O15068-6|MCF2L	MULTI-SECPEP	A375_MHC_IP_R2	2	562.1868286132812	2	561.787504	1121.56045	-0.71555	-0.00040199	0.17821	0.00010012	-0.53734	-0.00030187	561.787838814467	66.511	0.56303	67.247	66.932	67.495	0.73631					15	10	2	0	0	0	0.4977	1	25204	25204		59.368	24.967	1	1732200			27342	4030	19553	19713	26792	26792					0.004536981696446674
KTDPVDIYKSW	11	Unmodified	_KTDPVDIYKSW_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	676.74755859375	2	676.34826	1350.68197	-0.61769	-0.00041778	0.23806	0.00016101	-0.37963	-0.00025676	676.3484560215271	63.695	0.45989	63.695	63.58	64.04	0					13	8	2	0	0	0	0.80617	1	23070	23070		36.955	24.78	1	2034300			27343	5172	19554	19714	26793	26793					0.02065320532142323
KTDPVDIYKSW	11	Unmodified	_KTDPVDIYKSW_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	A375_MHC_IP_R2	2	451.63446044921875	3	451.234599	1350.68197	-0.25094	-0.00011323	-0.62119	-0.0002803	-0.87213	-0.00039354	451.23419946590207	62.931	0.96149	63.674	63.18	64.142	0.74263					28	18	2	0	0	0	0.70017	1	23906	23906		9.8265	6.4708	1	2300300			27344	5172	19554	19714	26794	26794					0.02065320532142323
KTDPVDIYKSW	11	Unmodified	_KTDPVDIYKSW_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	676.5147705078125	2	676.34826	1350.68197	-0.63935	-0.00043242	0.19614	0.00013266	-0.44321	-0.00029976	676.3484191695836	63.072	0.50636	63.814	63.534	64.04	0.74263					18	9	3	0	0	0	0.98069	1	23966	23966		18.721	12.515	1	1280800			27345	5172	19554	19714	26795	26795					0.02065320532142323
KTDPVDIYKSW	11	Unmodified	_KTDPVDIYKSW_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MATCH	A375_MHC_IP_R1	1		3	451.234599	1350.68197	-0.15404	-6.9509E-05	0.021357	9.637E-06	-0.13268	-5.9872E-05	451.23465030186054	63.755	0.91561	63.755	63.377	64.292	0	0.04073	0.00025899	NaN	9.8265	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	908810			27346	5172	19554	19714							0.02065320532142323
KTDQLSETRRL	11	Unmodified	_KTDQLSETRRL_					0	0	0			REV__nc|ENSG00000162891|Q9NYY1-2|IL20	REV__nc|ENSG00000162891|Q9NYY1-2|IL20	MSMS	A375_MHC_IP_R1	1	673.930908203125	2	673.872965	1345.73138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.16	1	120.16	119.66	120.66	0								0	0	0	0.16152	1	44488	44488		10.8	0.64894	1		+		27347	20318	19555	19715	26796	26796					0.07234028540938198
KTDSDSDLQLY	11	Unmodified	_KTDSDSDLQLY_					0	0	0		nc|ENSG00000116337|Q01433-4|AMPD2;ENST00000526301.5_1_1:110162158-110172443:+|nuORF;nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;ENSG00000116337|ENST00000528667|AMPD2;ENST00000525415.1_1_1:110168821-110169689:+|nuORF	nc|ENSG00000116337|Q01433-4|AMPD2	nc|ENSG00000116337|Q01433-4|AMPD2	MULTI-MSMS	A375_MHC_IP_R1	1	643.2012939453125	2	642.80134	1283.58813	-0.38612	-0.0002482	0.25013	0.00016079	-0.13598	-8.7411E-05	642.8015170460044	51.904	0.51078	51.904	51.625	52.136	0					18	9	2	0	0	0	0.082464	1	18421	18421		73.196	19.363	1	8944000			27348	14557	19556	19716	26797	26797					-0.04232443360797333
KTDSDSDLQLY	11	Unmodified	_KTDSDSDLQLY_					0	0	0		nc|ENSG00000116337|Q01433-4|AMPD2;ENST00000526301.5_1_1:110162158-110172443:+|nuORF;nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;ENSG00000116337|ENST00000528667|AMPD2;ENST00000525415.1_1_1:110168821-110169689:+|nuORF	nc|ENSG00000116337|Q01433-4|AMPD2	nc|ENSG00000116337|Q01433-4|AMPD2	MULTI-MSMS	A375_MHC_IP_R2	2	643.201171875	2	642.80134	1283.58813	-0.86979	-0.0005591	0.056261	3.6165E-05	-0.81353	-0.00052294	642.8013678526156	51.22	0.55707	51.972	51.713	52.27	0.75225					25	10	3	0	0	0	0.082464	1	19258	19258		73.196	4.0914	1	7284800			27349	14557	19556	19716	26798	26798					-0.04232443360797333
KTDSTGTHSLY	11	Unmodified	_KTDSTGTHSLY_					0	0	0		ENSG00000116991|ENST00000674635|SIPA1L2;ENSG00000213445|ENST00000534313|SIPA1;SIPA1L3-CEP89|1|fusion;ENSG00000105738|ENST00000222345|SIPA1L3;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1	ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1	ENSG00000116991|ENST00000674635|SIPA1L2	MULTI-MSMS	A375_MHC_IP_R1	1	605.6903076171875	2	605.290942	1208.56733	-0.32998	-0.00019973	0.41299	0.00024998	0.083016	5.0249E-05	605.2910104587448	20.069	0.30295	20.069	19.877	20.18	0					8	5	2	0	0	0	0.5509	1	5128	5128		33.445	8.4539	1	1464300			27350	3449;9169	19557	19717	26799	26799					-0.028609889497602126
KTDSTGTHSLY	11	Unmodified	_KTDSTGTHSLY_					0	0	0		ENSG00000116991|ENST00000674635|SIPA1L2;ENSG00000213445|ENST00000534313|SIPA1;SIPA1L3-CEP89|1|fusion;ENSG00000105738|ENST00000222345|SIPA1L3;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1	ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1	ENSG00000116991|ENST00000674635|SIPA1L2	MULTI-MATCH	A375_MHC_IP_R2	2		2	605.290942	1208.56733	-0.70219	-0.00042503	0.20966	0.00012691	-0.49253	-0.00029813	605.7922531791769	19.121	0.25011	19.724	19.583	19.833	0.60308	-0.17234	-0.00016306	NaN	33.445	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1544300			27351	3449;9169	19557	19717							-0.028609889497602126
KTEDIFWAY	9	Unmodified	_KTEDIFWAY_					0	0	0		ENSG00000151229|ENST00000280871|SLC2A13	ENSG00000151229|ENST00000280871|SLC2A13	ENSG00000151229|ENST00000280871|SLC2A13	MULTI-SECPEP	A375_MHC_IP_R1	1	587.18505859375	2	586.784764	1171.55498	-0.40724	-0.00023896	0.83013	0.00048711	0.42289	0.00024815	586.785153148163	95	0.5602	95	94.752	95.312	0					16	10	2	0	0	0	0.16764	1	34925	34925		60.074	27.768	1	1842800			27352	5888	19558	19718	26800	26800					-0.023939806221733306
KTEDIFWAY	9	Unmodified	_KTEDIFWAY_					0	0	0		ENSG00000151229|ENST00000280871|SLC2A13	ENSG00000151229|ENST00000280871|SLC2A13	ENSG00000151229|ENST00000280871|SLC2A13	MULTI-SECPEP	A375_MHC_IP_R2	2	587.1852416992188	2	586.784764	1171.55498	-0.35144	-0.00020622	0.26882	0.00015774	-0.082618	-4.8479E-05	586.7848940962657	94.272	0.50658	95.017	94.768	95.274	0.74474					23	9	3	0	0	0	0.41434	1	35829	35829		39.95	19.496	1	2199800			27353	5888	19558	19718	26801	26801					-0.023939806221733306
KTEDPDLPAFY	11	Unmodified	_KTEDPDLPAFY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000574728.1_1_17:1583983-1584260:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R1	1	648.7108764648438	2	648.311343	1294.60813	-0.27448	-0.00017795	0.13179	8.5439E-05	-0.1427	-9.2511E-05	648.3110342665814	77.772	0.6628	77.772	77.436	78.099	0					30	12	3	0	0	0	0.31482	1	28362	28362		55.235	23.966	1	3748500			27354	7864	19559	19719	26802	26802					-0.02738647630167179
KTEDPDLPAFY	11	Unmodified	_KTEDPDLPAFY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000574728.1_1_17:1583983-1584260:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R2	2	648.7107543945312	2	648.311343	1294.60813	-0.68205	-0.00044218	-0.16737	-0.00010851	-0.84942	-0.00055069	648.3112189138945	77.111	0.50676	77.853	77.607	78.113	0.74293					18	9	2	0	0	0	0.45335	1	29257	29257		49.527	31.381	1	4521200			27355	7864	19559	19719	26803	26803					-0.02738647630167179
KTEDPKLRLIW	11	Unmodified	_KTEDPKLRLIW_					0	0	0		ENST00000480453.5_1_2:46067625-46070169:+|nuORF	ENST00000480453.5_1_2:46067625-46070169:+|nuORF	ENST00000480453.5_1_2:46067625-46070169:+|nuORF	MSMS	A375_MHC_IP_R2	2	699.8082275390625	2	699.908819	1397.80309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.85	1	140.89	140.39	141.39	0.04216								0	0	0	0.16337	1	55117	55117		1.1933	0	1				27356	12498	19560	19720	26804	26804					0.12009567965446877
KTEESDTDKL	10	Unmodified	_KTEESDTDKL_					0	0	0		GHR|p.R364K|1|0.51|ENSG00000112964|chr5:42718598-42718598|G/A|missense_variant	GHR|p.R364K|1|0.51|ENSG00000112964|chr5:42718598-42718598|G/A|missense_variant	GHR|p.R364K|1|0.51|ENSG00000112964|chr5:42718598-42718598|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	388.62646484375	3	389.190947	1164.55101	-0.68618	-0.00026706	3.9309	0.0015299	3.2447	0.0012628	389.19222719444275	33.618	0.2529	34.371	34.247	34.5	0.75225					6	4	2	0	0	0	0.94102	1	12086	12086		0.50596	0	1	931390			27357	14046	19561	19721	26805	26805					-0.024681149065827412
KTEIEFEAT	9	Unmodified	_KTEIEFEAT_					0	0	0			REV__ENSG00000159307|ENST00000360835|SCUBE1	REV__ENSG00000159307|ENST00000360835|SCUBE1	MULTI-SECPEP	A375_MHC_IP_R2	2	533.6638793945312	2	534.266404	1066.51826	-0.79988	-0.00042735	0.73764	0.0003941	-0.062235	-3.325E-05	534.26691193708	27.191	0.15348	27.869	27.741	27.895	0.67857					4	2	2	0	0	0	0.60917	1	9243	9243		13.906	10.31	1	1603000	+		27358	20112	19562	19722	26806	26806					-0.012342772387455625
KTEIIEFGF	9	Unmodified	_KTEIIEFGF_					0	0	0			REV__nc|ENSG00000121579|Q9GZZ1-2|NAA50	REV__nc|ENSG00000121579|Q9GZZ1-2|NAA50	MULTI-MSMS	A375_MHC_IP_R2	2	542.713134765625	2	542.289682	1082.56481	-0.82819	-0.00044912	1.4702	0.00079727	0.642	0.00034815	542.2903260066597	74.044	0.60995	74.782	74.501	75.111	0.73752					21	11	2	0	0	0	0.38603	1	28185	28185		25.399	1.3787	1	2501400	+		27359	18164	19563	19723	26807	26807					0.026832073831883463
KTEKMIKEY	9	Unmodified	_KTEKMIKEY_					0	0	0			REV__TTN|p.R606K|1|0.29|ENSG00000155657|chr2:178790099-178790099|C/T|missense_variant	REV__TTN|p.R606K|1|0.29|ENSG00000155657|chr2:178790099-178790099|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	390.2777404785156	3	390.546008	1168.6162	-0.024124	-9.4214E-06	-1.059	-0.00041358	-1.0831	-0.000423	390.5456478463147	27.95	1.1606	27.95	27.128	28.288	0					25	22	2	0	0	0	0.69179	1	8364	8364		21.59	21.59	1	2955900	+		27360	28932	19564	19724	26808	26808					0.03863208085590486
KTELERAFGYY	11	Unmodified	_KTELERAFGYY_					0	0	0		nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	MULTI-MSMS	A375_MHC_IP_R1	1	459.96624755859375	3	459.566348	1375.67722	-0.27716	-0.00012737	-0.025279	-1.1617E-05	-0.30244	-0.00013899	459.5662837862984	61.066	0.76418	61.066	60.77	61.534	0					44	14	5	0	0	0	0.42429	1	21958	21958		30.354	14.08	1	23386000			27361	3048	19565	19725	26809	26809					0.004404363894082053
KTELERAFGYY	11	Unmodified	_KTELERAFGYY_					0	0	0		nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	MULTI-MSMS	A375_MHC_IP_R1	1	689.2451171875	2	688.845884	1375.67722	-0.65931	-0.00045416	-0.043334	-2.9851E-05	-0.70264	-0.00048401	688.8458162397217	61.05	0.56039	61.05	60.77	61.331	0					24	10	3	0	0	0	0.00021903	1	21984	21984		129.39	96.602	1	8276600			27362	3048	19565	19725	26810	26810					0.004404363894082053
KTELERAFGYY	11	Unmodified	_KTELERAFGYY_					0	0	0		nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	MULTI-MSMS	A375_MHC_IP_R2	2	459.9662170410156	3	459.566348	1375.67722	-0.69514	-0.00031946	-0.11499	-5.2846E-05	-0.81013	-0.00037231	459.5662626547111	60.411	0.76501	61.156	60.801	61.566	0.74503					51	14	5	0	0	0	0.46059	1	22814	22814		28.271	18.506	1	23367000			27363	3048	19565	19725	26811	26811					0.004404363894082053
KTELERAFGYY	11	Unmodified	_KTELERAFGYY_					0	0	0		nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	MULTI-MSMS	A375_MHC_IP_R2	2	689.2448120117188	2	688.845884	1375.67722	-0.97111	-0.00066895	-0.010693	-7.3655E-06	-0.98181	-0.00067631	688.8459743140279	60.424	0.66261	61.169	60.853	61.515	0.74503					30	12	3	0	0	0	3.8168E-05	1	22850	22850		139.54	95.768	1	5288500			27364	3048	19565	19725	26812	26812					0.004404363894082053
KTETEPVFWYY	11	Unmodified	_KTETEPVFWYY_					0	0	0		ENST00000564111.5_1_16:12070663-12146080:+|nuORF;nc|ENSG00000048471|Q8TEQ0-2|SNX29;ENSG00000048471|ENST00000566228|SNX29	ENST00000564111.5_1_16:12070663-12146080:+|nuORF	ENST00000564111.5_1_16:12070663-12146080:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	732.2481689453125	2	731.848093	1461.68163	-0.52292	-0.0003827	0.49303	0.00036083	-0.029886	-2.1872E-05	731.8480852703863	100.61	0.55762	100.61	100.33	100.89	0					21	10	3	0	0	0	0.38403	2	36963	36938;36963		40.239	31.494	1	3079500			27365	1214	19566	19726	26813;26814	26814					-0.030740991876882617
KTETEPVFWYY	11	Unmodified	_KTETEPVFWYY_					0	0	0		ENST00000564111.5_1_16:12070663-12146080:+|nuORF;nc|ENSG00000048471|Q8TEQ0-2|SNX29;ENSG00000048471|ENST00000566228|SNX29	ENST00000564111.5_1_16:12070663-12146080:+|nuORF	ENST00000564111.5_1_16:12070663-12146080:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	732.24853515625	2	731.848093	1461.68163	-0.55454	-0.00040584	0.48342	0.00035379	-0.071117	-5.2047E-05	731.8486825156892	99.787	0.40527	100.55	100.32	100.73	0.76278					12	7	2	0	0	0	0.46316	1	37854	37854		51.415	39.175	1	2778400			27366	1214	19566	19726	26815	26815					-0.030740991876882617
KTEYALWNY	9	Unmodified	_KTEYALWNY_					0	0	0		nc|ENSG00000107036|Q4ADV7-2|RIC1;RIC1|p.R1288Efs*5|1|0.39|ENSG00000107036|chr9:5772956-5772956|C/-|frameshift_variant;nc|ENSG00000107036|Q4ADV7-3|RIC1;ENSG00000107036|ENST00000414202|RIC1	nc|ENSG00000107036|Q4ADV7-2|RIC1	nc|ENSG00000107036|Q4ADV7-2|RIC1	MULTI-MSMS	A375_MHC_IP_R1	1	594.6905517578125	2	594.290214	1186.56587	-0.18353	-0.00010907	0.2599	0.00015446	0.076374	4.5388E-05	594.2902911965542	78.737	0.45534	78.737	78.505	78.96	0					23	8	4	0	0	0	0.135	1	28736	28736		55.503	30.103	1	3783600			27367	2722	19567	19727	26816	26816					-0.019945782478998808
KTEYALWNY	9	Unmodified	_KTEYALWNY_					0	0	0		nc|ENSG00000107036|Q4ADV7-2|RIC1;RIC1|p.R1288Efs*5|1|0.39|ENSG00000107036|chr9:5772956-5772956|C/-|frameshift_variant;nc|ENSG00000107036|Q4ADV7-3|RIC1;ENSG00000107036|ENST00000414202|RIC1	nc|ENSG00000107036|Q4ADV7-2|RIC1	nc|ENSG00000107036|Q4ADV7-2|RIC1	MULTI-MSMS	A375_MHC_IP_R2	2	594.6901245117188	2	594.290214	1186.56587	-0.55242	-0.0003283	0.47094	0.00027988	-0.081481	-4.8423E-05	594.2904282709999	78.068	0.46007	78.811	78.52	78.98	0.74293					17	8	3	0	0	0	0.074484	2	29637	29601;29637		67.838	42.439	1	2809900			27368	2722	19567	19727	26817;26818	26818					-0.019945782478998808
KTFARYLSF	9	Unmodified	_KTFARYLSF_					0	0	0		ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2;ENST00000468414.1_1_3:127336783-127340613:+|nuORF	ENST00000474964.5_1_3:127323572-127340613:+|nuORF	ENST00000474964.5_1_3:127323572-127340613:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	566.17724609375	2	566.811116	1131.60768	-0.39477	-0.00022376	0.47949	0.00027178	0.08472	4.802E-05	566.8112516349834	64.237	0.35419	64.237	64.09	64.444	0					9	6	2	0	0	0	0.71341	1	23215	23215		8.7454	0	1	1544700			27369	1558	19568	19728	26819	26819					0.04714022231269155
KTFEDKVTF	9	Unmodified	_KTFEDKVTF_					0	0	0		VWA5A|p.P534S|1|0.17|ENSG00000110002|chr11:124136649-124136649|C/T|missense_variant;ENSG00000110002|ENST00000456829|VWA5A	VWA5A|p.P534S|1|0.17|ENSG00000110002|chr11:124136649-124136649|C/T|missense_variant	VWA5A|p.P534S|1|0.17|ENSG00000110002|chr11:124136649-124136649|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	372.5967712402344	3	372.197485	1113.57063	0.42561	0.00015841	-2.7472	-0.0010225	-2.3216	-0.0008641	372.1972444997073	42.296	0.90955	42.296	41.982	42.891	0					32	17	3	0	0	0	0.72623	1	14614	14614		9.7643	2.7272	1	4454500			27370	2907	19569	19729	26820	26820					0.018383058948302278
KTFEDKVTF	9	Unmodified	_KTFEDKVTF_					0	0	0		VWA5A|p.P534S|1|0.17|ENSG00000110002|chr11:124136649-124136649|C/T|missense_variant;ENSG00000110002|ENST00000456829|VWA5A	VWA5A|p.P534S|1|0.17|ENSG00000110002|chr11:124136649-124136649|C/T|missense_variant	VWA5A|p.P534S|1|0.17|ENSG00000110002|chr11:124136649-124136649|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	558.1923828125	2	557.792589	1113.57063	-0.46105	-0.00025717	-0.010528	-5.8725E-06	-0.47158	-0.00026304	557.7926893151889	42.21	0.85832	42.21	41.932	42.79	0					54	16	5	0	0	0	0.0010099	1	14580	14580		169.92	104.69	1	45513000			27371	2907	19569	19729	26821	26821					0.018383058948302278
KTFEDKVTF	9	Unmodified	_KTFEDKVTF_					0	0	0		VWA5A|p.P534S|1|0.17|ENSG00000110002|chr11:124136649-124136649|C/T|missense_variant;ENSG00000110002|ENST00000456829|VWA5A	VWA5A|p.P534S|1|0.17|ENSG00000110002|chr11:124136649-124136649|C/T|missense_variant	VWA5A|p.P534S|1|0.17|ENSG00000110002|chr11:124136649-124136649|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	372.5971374511719	3	372.197485	1113.57063	0.33415	0.00012437	-2.6542	-0.00098787	-2.32	-0.0008635	372.19729271369476	41.507	0.91602	42.281	41.946	42.862	0.77451					48	17	5	0	0	0	0.11715	1	15369	15369		37.771	19.398	1	8218700			27372	2907	19569	19729	26822	26822					0.018383058948302278
KTFEDKVTF	9	Unmodified	_KTFEDKVTF_					0	0	0		VWA5A|p.P534S|1|0.17|ENSG00000110002|chr11:124136649-124136649|C/T|missense_variant;ENSG00000110002|ENST00000456829|VWA5A	VWA5A|p.P534S|1|0.17|ENSG00000110002|chr11:124136649-124136649|C/T|missense_variant	VWA5A|p.P534S|1|0.17|ENSG00000110002|chr11:124136649-124136649|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	558.1921997070312	2	557.792589	1113.57063	-0.89414	-0.00049874	-0.023853	-1.3305E-05	-0.91799	-0.00051205	557.792643031379	41.448	0.6094	42.222	41.946	42.555	0.77451					38	11	5	0	0	0	0.010947	1	15324	15324		128.58	55.611	1	36316000			27373	2907	19569	19729	26823	26823					0.018383058948302278
KTFIEKNFW	9	Unmodified	_KTFIEKNFW_					0	0	0		ENSG00000023171|ENST00000635736|GRAMD1B;nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;nc|ENSG00000023171|Q3KR37-3|GRAMD1B	ENSG00000023171|ENST00000635736|GRAMD1B	ENSG00000023171|ENST00000635736|GRAMD1B	MULTI-MSMS	A375_MHC_IP_R1	1	606.7373046875	2	606.824224	1211.63389	-0.45129	-0.00027385	-0.017927	-1.0879E-05	-0.46922	-0.00028473	606.8241758443592	65.539	0.76569	65.539	65.257	66.022	0					26	14	3	0	0	0	0.17375	1	23694	23694		49.527	22.644	1	4877400			27374	1072	19570	19730	26824	26824					0.036542914027450024
KTFIEKNFW	9	Unmodified	_KTFIEKNFW_					0	0	0		ENSG00000023171|ENST00000635736|GRAMD1B;nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;nc|ENSG00000023171|Q3KR37-3|GRAMD1B	ENSG00000023171|ENST00000635736|GRAMD1B	ENSG00000023171|ENST00000635736|GRAMD1B	MULTI-SECPEP	A375_MHC_IP_R1	1	404.96063232421875	3	404.885241	1211.63389	-0.54683	-0.0002214	0.4832	0.00019564	-0.06363	-2.5763E-05	404.88535663312683	65.523	0.51141	65.523	65.257	65.768	0					21	9	3	0	0	0	0.57304	1	23743	23743		13.519	6.4169	1	2282000			27375	1072	19570	19730	26825	26825					0.036542914027450024
KTFIEKNFW	9	Unmodified	_KTFIEKNFW_					0	0	0		ENSG00000023171|ENST00000635736|GRAMD1B;nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;nc|ENSG00000023171|Q3KR37-3|GRAMD1B	ENSG00000023171|ENST00000635736|GRAMD1B	ENSG00000023171|ENST00000635736|GRAMD1B	MULTI-MSMS	A375_MHC_IP_R2	2	405.28546142578125	3	404.885241	1211.63389	0.049416	2.0008E-05	-0.058864	-2.3833E-05	-0.0094477	-3.8252E-06	404.88514994381296	64.684	0.5604	65.425	65.106	65.666	0.74022					24	10	3	0	0	0	0.068433	1	24521	24521		57.108	40.059	1	2325400			27376	1072	19570	19730	26826	26826					0.036542914027450024
KTFIEKNFW	9	Unmodified	_KTFIEKNFW_					0	0	0		ENSG00000023171|ENST00000635736|GRAMD1B;nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;nc|ENSG00000023171|Q3KR37-3|GRAMD1B	ENSG00000023171|ENST00000635736|GRAMD1B	ENSG00000023171|ENST00000635736|GRAMD1B	MULTI-SECPEP	A375_MHC_IP_R2	2	607.2240600585938	2	606.824224	1211.63389	-0.36767	-0.00022311	-0.21061	-0.00012781	-0.57828	-0.00035091	606.8242346698927	64.646	0.96826	65.387	64.749	65.717	0.74022					33	18	3	0	0	0	0.013536	1	24517	24517		100.71	68.403	1	3712300			27377	1072	19570	19730	26827	26827					0.036542914027450024
KTFISLENF	9	Unmodified	_KTFISLENF_					0	0	0		nc|ENSG00000173875|Q3KP31-2|ZNF791;ENSG00000173875|ENST00000343325|ZNF791	nc|ENSG00000173875|Q3KP31-2|ZNF791	nc|ENSG00000173875|Q3KP31-2|ZNF791	MULTI-SECPEP	A375_MHC_IP_R1	1	550.1945190429688	2	549.795132	1097.57571	-0.59592	-0.00032763	0.41851	0.0002301	-0.17741	-9.7537E-05	549.7949957075259	94.115	0.45187	94.115	93.84	94.291	0					21	8	4	0	0	0	0.044425	1	34594	34594		78.06	28.127	1	2686800			27378	7836	19571	19731	26828	26828					0.03082609757461796
KTFISLENF	9	Unmodified	_KTFISLENF_					0	0	0		nc|ENSG00000173875|Q3KP31-2|ZNF791;ENSG00000173875|ENST00000343325|ZNF791	nc|ENSG00000173875|Q3KP31-2|ZNF791	nc|ENSG00000173875|Q3KP31-2|ZNF791	MULTI-SECPEP	A375_MHC_IP_R2	2	550.1948852539062	2	549.795132	1097.57571	-0.67735	-0.0003724	0.80424	0.00044217	0.12689	6.9761E-05	549.7956001265806	93.304	0.66005	94.043	93.596	94.256	0.73902					19	12	2	0	0	0	0.044425	1	35469	35469		78.06	41.933	1	2815700			27379	7836	19571	19731	26829	26829					0.03082609757461796
KTFIYPQSF	9	Unmodified	_KTFIYPQSF_					0	0	0		nc|ENSG00000186300|Q8NEP9-2|ZNF555;nc|ENSG00000186300|Q8NEP9-4|ZNF555;ENSG00000186300|ENST00000334241|ZNF555	nc|ENSG00000186300|Q8NEP9-2|ZNF555	nc|ENSG00000186300|Q8NEP9-2|ZNF555	MULTI-SECPEP	A375_MHC_IP_R1	1	566.1974487304688	2	565.797675	1129.5808	-0.39853	-0.00022549	-0.84744	-0.00047948	-1.246	-0.00070497	565.7972015539409	73.596	0.96199	73.596	73.285	74.247	0					29	18	2	0	0	0	0.046527	1	26791	26791		107.1	50.923	1	2717800			27380	8739	19572	19732	26830	26830					0.02118913620074636
KTFIYPQSF	9	Unmodified	_KTFIYPQSF_					0	0	0		nc|ENSG00000186300|Q8NEP9-2|ZNF555;nc|ENSG00000186300|Q8NEP9-4|ZNF555;ENSG00000186300|ENST00000334241|ZNF555	nc|ENSG00000186300|Q8NEP9-2|ZNF555	nc|ENSG00000186300|Q8NEP9-2|ZNF555	MULTI-SECPEP	A375_MHC_IP_R2	2	566.1971435546875	2	565.797675	1129.5808	-0.48273	-0.00027313	-1.0538	-0.00059624	-1.5365	-0.00086937	565.7970062086611	72.692	0.76329	73.428	73.226	73.99	0.73541					36	14	4	0	0	0	0.2733	1	27605	27605		61.09	17.318	1	2522400			27381	8739	19572	19732	26831	26831					0.02118913620074636
KTFKDEELF	9	Unmodified	_KTFKDEELF_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4;nc|ENSG00000136051|Q2M389-2|WASHC4;ENST00000311317.8_1_12:105501518-105541426:+|nuORF	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MSMS	A375_MHC_IP_R1	1	386.60113525390625	3	386.201007	1155.58119	0.40827	0.00015767	-0.31892	-0.00012317	0.089341	3.4504E-05	386.20100563994987	49.878	0.76607	49.878	49.642	50.408	0					31	14	3	0	0	0	0.22013	1	17654	17654		34.222	12.632	1	3796400			27382	4747	19573	19733	26832	26832					0.009622885492717614
KTFKDEELF	9	Unmodified	_KTFKDEELF_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4;nc|ENSG00000136051|Q2M389-2|WASHC4;ENST00000311317.8_1_12:105501518-105541426:+|nuORF	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-SECPEP	A375_MHC_IP_R1	1	579.197998046875	2	578.797872	1155.58119	-0.015355	-8.8876E-06	-0.28383	-0.00016428	-0.29918	-0.00017317	578.7977064424028	49.917	0.7146	49.917	49.54	50.254	0					33	13	4	0	0	0	0.010931	1	17617	17617		114.19	79.785	1	14740000			27383	4747	19573	19733	26833	26833					0.009622885492717614
KTFKDEELF	9	Unmodified	_KTFKDEELF_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4;nc|ENSG00000136051|Q2M389-2|WASHC4;ENST00000311317.8_1_12:105501518-105541426:+|nuORF	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-SECPEP	A375_MHC_IP_R2	2	579.1978149414062	2	578.797872	1155.58119	-0.39883	-0.00023084	-0.12341	-7.1428E-05	-0.52224	-0.00030227	578.7977165077139	49.051	0.86429	49.808	49.231	50.096	0.75737					40	16	4	0	0	0	0.035151	1	18370	18370		93.938	48.239	1	13801000			27384	4747	19573	19733	26834	26834					0.009622885492717614
KTFLSQKTSR	10	Unmodified	_KTFLSQKTSR_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2;REV__FSIP2|p.T6548Lfs*12|1|0.3|ENSG00000188738|chr2:185808944-185808944|A/-|frameshift_variant	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	A375_MHC_IP_R1	1	399.25872802734375	3	399.2313	1194.67207	-0.1686	-6.7311E-05	0.47623	0.00019013	0.30763	0.00012282	399.23161854814475	23.133	0.30264	23.133	22.924	23.227	0					8	5	2	0	0	0	0.71175	1	6297	6297		7.0371	1.2537	1	2649900	+		27385	22110;26655	19574	19734	26835	26835					0.08252177317422138
KTFMPIAW	8	Unmodified	_KTFMPIAW_					0	0	0		nc|ENSG00000005889|P17010-2|ZFX;ZFX|p.C607Vfs*6|1|0.59|ENSG00000005889|chrX:24210777-24210777|T/-|frameshift_variant;ZFX|p.H694*|1|0.53|ENSG00000005889|chrX:24211033-24211034|-/TAGA|frameshift_variant;ENSG00000005889|ENST00000304543|ZFX;nc|ENSG00000005889|P17010-3|ZFX	nc|ENSG00000005889|P17010-2|ZFX	nc|ENSG00000005889|P17010-2|ZFX	MULTI-MSMS	A375_MHC_IP_R1	1	497.6649475097656	2	497.264956	992.515359	-0.37374	-0.00018585	-0.0031461	-1.5645E-06	-0.37689	-0.00018741	497.2648998985052	100.19	0.50514	100.19	99.825	100.33	0					12	9	2	0	0	0	0.62444	1	36834	36834		43.858	43.858	1	1551200			27386	904	19575	19735	26836	26836					0.01880220893394835
KTFMPIAW	8	Unmodified	_KTFMPIAW_					0	0	0		nc|ENSG00000005889|P17010-2|ZFX;ZFX|p.C607Vfs*6|1|0.59|ENSG00000005889|chrX:24210777-24210777|T/-|frameshift_variant;ZFX|p.H694*|1|0.53|ENSG00000005889|chrX:24211033-24211034|-/TAGA|frameshift_variant;ENSG00000005889|ENST00000304543|ZFX;nc|ENSG00000005889|P17010-3|ZFX	nc|ENSG00000005889|P17010-2|ZFX	nc|ENSG00000005889|P17010-2|ZFX	MULTI-MSMS	A375_MHC_IP_R2	2	497.6643371582031	2	497.264956	992.515359	-0.31797	-0.00015812	-0.85849	-0.0004269	-1.1765	-0.00058501	497.26467539761245	99.171	0.458	99.931	99.708	100.17	0.75977					17	8	3	0	0	0	0.74098	1	37670	37670		22.736	5.6497	1	1884700			27387	904	19575	19735	26837	26837					0.01880220893394835
KTFNEPGSEYF	11	Unmodified	_KTFNEPGSEYF_					0	0	0		nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENST00000585799.5_1_19:11132109-11172489:+|nuORF;ENST00000591595.5_1_19:11130023-11172489:+|nuORF	nc|ENSG00000127616|P51532-5|SMARCA4	nc|ENSG00000127616|P51532-5|SMARCA4	MULTI-SECPEP	A375_MHC_IP_R1	1	660.2006225585938	2	659.801143	1317.58773	-0.51418	-0.00033926	-0.28225	-0.00018623	-0.79642	-0.00052548	659.801036102249	60.618	0.55963	60.618	60.312	60.871	0					18	10	2	0	0	0	0.33234	1	21807	21807		35.612	17.239	1	2908300			27388	4100	19576	19736	26838	26838					-0.058358182900065
KTFNEPGSEYF	11	Unmodified	_KTFNEPGSEYF_					0	0	0		nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENST00000585799.5_1_19:11132109-11172489:+|nuORF;ENST00000591595.5_1_19:11130023-11172489:+|nuORF	nc|ENSG00000127616|P51532-5|SMARCA4	nc|ENSG00000127616|P51532-5|SMARCA4	MULTI-SECPEP	A375_MHC_IP_R2	2	660.2005615234375	2	659.801143	1317.58773	-1.2468	-0.00082263	0.1103	7.2778E-05	-1.1365	-0.00074985	659.8013828562272	59.981	0.71191	60.728	60.45	61.162	0.74714					20	13	2	0	0	0	0.33234	1	22692	22692		49.527	21.898	1	4623700			27389	4100	19576	19736	26839	26839					-0.058358182900065
KTFPEIIDY	9	Unmodified	_KTFPEIIDY_					0	0	0		ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	MULTI-SECPEP	A375_MHC_IP_R1	1	563.6944580078125	2	563.294965	1124.57538	-0.61757	-0.00034788	0.26362	0.00014849	-0.35396	-0.00019938	563.2949797251615	84.286	1.0155	84.286	83.837	84.852	0					41	19	3	0	0	0	0.42978	1	30826	30826		53.404	15.43	1	4986000			27390	3967	19577	19737	26840	26840					0.0180719003762988
KTFPEIIDY	9	Unmodified	_KTFPEIIDY_					0	0	0		ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	MULTI-SECPEP	A375_MHC_IP_R2	2	563.6200561523438	2	563.294965	1124.57538	-0.48091	-0.00027089	-0.085486	-4.8154E-05	-0.5664	-0.00031905	563.7964838803849	83.601	0.81718	84.341	83.898	84.715	0.73962					34	15	3	0	0	0	0.15736	1	31794	31794		70.332	22.583	1	6767000			27391	3967	19577	19737	26841	26841					0.0180719003762988
KTFPKNEEF	9	Unmodified	_KTFPKNEEF_					0	0	0		nc|ENSG00000010539|P98182-3|ZNF200;nc|ENSG00000010539|P98182-2|ZNF200;ENSG00000010539|ENST00000414144|ZNF200;ENST00000575285.1_1_16:3273894-3274698:-|nuORF	nc|ENSG00000010539|P98182-3|ZNF200	nc|ENSG00000010539|P98182-3|ZNF200	MULTI-MSMS	A375_MHC_IP_R1	1	570.690185546875	2	570.290214	1138.56587	-0.57114	-0.00032572	0.49672	0.00028327	-0.074424	-4.2443E-05	570.2905672626147	26.115	1.0645	26.115	25.46	26.524	0					34	20	2	0	0	0	0.0095341	2	7692	7692;7746		96.936	35.334	1	4965400			27392	984	19578	19738	26842;26843	26842					0.0021342175209611014
KTFPKNEEF	9	Unmodified	_KTFPKNEEF_					0	0	0		nc|ENSG00000010539|P98182-3|ZNF200;nc|ENSG00000010539|P98182-2|ZNF200;ENSG00000010539|ENST00000414144|ZNF200;ENST00000575285.1_1_16:3273894-3274698:-|nuORF	nc|ENSG00000010539|P98182-3|ZNF200	nc|ENSG00000010539|P98182-3|ZNF200	MULTI-MSMS	A375_MHC_IP_R2	2	570.1536865234375	2	570.290214	1138.56587	-0.75163	-0.00042865	0.68828	0.00039252	-0.063349	-3.6127E-05	570.2907567600479	25.459	0.96801	26.103	25.465	26.433	0.64368					32	18	2	0	0	0	0.037085	1	8461	8461		69.338	25.48	1	3842700			27393	984	19578	19738	26844	26844					0.0021342175209611014
KTFPNRTGF	9	Unmodified	_KTFPNRTGF_					0	0	0		nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	MULTI-SECPEP	A375_MHC_IP_R1	1	356.9254455566406	3	356.525936	1066.55598	-0.12191	-4.3463E-05	3.3071	0.0011791	3.1852	0.0011356	356.5258766689747	28.036	1.7187	28.036	27.482	29.201	0					62	33	3	0	0	0	0.27742	1	8485	8485		22.775	19.455	1	4918800			27394	1866	19579	19739	26845	26845					0.025362785373772567
KTFPNRTGF	9	Unmodified	_KTFPNRTGF_					0	0	0		nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	MULTI-SECPEP	A375_MHC_IP_R1	1	534.6848754882812	2	534.285266	1066.55598	-0.85521	-0.00045692	0.57845	0.00030906	-0.27675	-0.00014786	534.2853120271448	27.885	1.1602	27.885	27.381	28.541	0					64	22	4	0	0	0	0.47674	1	8410	8410		18.373	4.467	1	25122000			27395	1866	19579	19739	26846	26846					0.025362785373772567
KTFPNRTGF	9	Unmodified	_KTFPNRTGF_					0	0	0		nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	MULTI-MSMS	A375_MHC_IP_R2	2	534.6849975585938	2	534.285266	1066.55598	-0.79205	-0.00042318	0.23276	0.00012436	-0.55929	-0.00029882	534.285252101002	27.206	1.0699	27.885	27.433	28.502	0.67857					56	20	4	0	0	0	0.11638	1	9165	9165		47.732	16.464	1	26694000			27396	1866	19579	19739	26847	26847					0.025362785373772567
KTFPNRTGF	9	Unmodified	_KTFPNRTGF_					0	0	0		nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	MULTI-SECPEP	A375_MHC_IP_R2	2	356.9254455566406	3	356.525936	1066.55598	-0.20441	-7.2877E-05	1.7276	0.00061594	1.5232	0.00054306	356.52582437504213	27.295	0.8669	27.974	27.484	28.351	0.67857					41	16	3	0	0	0	0.061442	1	9228	9228		59.052	40.679	1	5048900			27397	1866	19579	19739	26848	26848					0.025362785373772567
KTFPYQHRY	9	Unmodified	_KTFPYQHRY_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	A375_MHC_IP_R1	1	414.28070068359375	3	413.88049	1238.61964	0.38897	0.00016099	-0.48496	-0.00020072	-0.095997	-3.9731E-05	413.880271529585	20.334	1.0676	20.334	19.674	20.742	0					68	20	5	0	0	0	0.0095015	2	5136	5136;5192		121.5	93.322	1	27459000			27398	3978	19580	19740	26849;26850	26849					0.00987638974447691
KTFPYQHRY	9	Unmodified	_KTFPYQHRY_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-SECPEP	A375_MHC_IP_R1	1	414.2803649902344	3	413.88049	1238.61964	0.69186	0.00028635	-0.85391	-0.00035342	-0.16206	-6.7072E-05	413.8801223235182	22.468	0.5103	22.468	22.113	22.623	0					16	9	3	0	0	0	0.058501	1	6035	6035		69.338	49.712	1	4466800			27399	3978	19580	19740	26851	26851					0.00987638974447691
KTFPYQHRY	9	Unmodified	_KTFPYQHRY_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	A375_MHC_IP_R2	2	414.2803649902344	3	413.88049	1238.61964	-0.26381	-0.00010919	0.31134	0.00012886	0.047522	1.9669E-05	413.8806817632817	19.108	0.61362	19.711	19.423	20.037	0.60308					40	13	5	0	0	0	0.0066114	2	5804	5804;5939		132.13	95.74	1	41270000			27400	3978	19580	19740	26852;26853	26852					0.00987638974447691
KTFPYQHRY	9	Unmodified	_KTFPYQHRY_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	A375_MHC_IP_R2	2	413.76239013671875	3	413.88049	1238.61964	-0.33089	-0.00013695	0.27822	0.00011515	-0.052671	-2.18E-05	413.880563300266	21.947	0.50987	22.567	22.336	22.846	0.61932					18	9	3	0	0	0	0.67152	1	6997	6997		9.544	7.46	1	3931300			27401	3978	19580	19740	26854	26854					0.00987638974447691
KTFQDEQRF	9	Unmodified	_KTFQDEQRF_					0	0	0		ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-4|USP54;nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF;nc|ENSG00000166348|Q70EL1-7|USP54	ENSG00000166348|ENST00000687698|USP54	ENSG00000166348|ENST00000687698|USP54	MULTI-MSMS	A375_MHC_IP_R1	1	400.5997619628906	3	400.199889	1197.57784	-0.57125	-0.00022862	0.54113	0.00021656	-0.030121	-1.2055E-05	400.20004345411064	26.137	0.65809	26.137	25.866	26.524	0					31	12	3	0	0	0	0.16286	2	7734	7671;7734		40.725	32.78	1	5600300			27402	7064	19581	19741	26855;26856	26856					-0.013049615047293628
KTFQDEQRF	9	Unmodified	_KTFQDEQRF_					0	0	0		ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-4|USP54;nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF;nc|ENSG00000166348|Q70EL1-7|USP54	ENSG00000166348|ENST00000687698|USP54	ENSG00000166348|ENST00000687698|USP54	MULTI-MSMS	A375_MHC_IP_R2	2	400.5997619628906	3	400.199889	1197.57784	-0.49112	-0.00019655	0.10505	4.204E-05	-0.38607	-0.00015451	400.1998292012543	25.444	0.76114	26.088	25.976	26.737	0.64368					18	14	2	0	0	0	0.063448	1	8528	8528		59.052	50.608	1	5021600			27403	7064	19581	19741	26857	26857					-0.013049615047293628
KTFQDEQRF	9	Unmodified	_KTFQDEQRF_					0	0	0		ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-4|USP54;nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF;nc|ENSG00000166348|Q70EL1-7|USP54	ENSG00000166348|ENST00000687698|USP54	ENSG00000166348|ENST00000687698|USP54	MULTI-SECPEP	A375_MHC_IP_R2	2	599.156982421875	2	599.796195	1197.57784	-0.96509	-0.00057885	0.38833	0.00023292	-0.57676	-0.00034594	599.796334089859	25.44	0.30349	26.083	25.976	26.28	0.64368					7	5	2	0	0	0	0.73926	1	8495	8495		12.873	2.7987	1	1694700			27404	7064	19581	19741	26858	26858					-0.013049615047293628
KTFQGKPIM	9	Oxidation (M)	_KTFQGKPIM(Oxidation (M))_		KTFQGKPIM(1)		KTFQGKPIM(86)	0	0	1		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-7|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MULTI-MSMS	A375_MHC_IP_R1	1	533.6913452148438	2	533.291702	1064.56885	-0.82496	-0.00043994	-0.066099	-3.525E-05	-0.89106	-0.00047519	533.2916906715104	19.343	0.3335	19.343	19.238	19.571	0					17	6	4	0	0	0	0.017727	1	4756	4756		86.332	46.382	1	55273000			27405	6487	19582	19742	26859	26859		346			0.03914973605242267
KTFQGKPIM	9	Oxidation (M)	_KTFQGKPIM(Oxidation (M))_		KTFQGKPIM(1)		KTFQGKPIM(86)	0	0	1		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-7|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MULTI-MSMS	A375_MHC_IP_R1	1	533.6915893554688	2	533.291702	1064.56885	-0.37968	-0.00020248	-0.42246	-0.0002253	-0.80214	-0.00042777	533.2914957431476	21.559	2.0793	21.559	21.199	23.278	0					76	40	4	0	0	0	0.017727	1	5643	5643		86.332	49.826	1	25649000			27406	6487	19582	19742	26860	26860		346			0.03914973605242267
KTFQGKPIM	9	Oxidation (M)	_KTFQGKPIM(Oxidation (M))_		KTFQGKPIM(1)		KTFQGKPIM(66)	0	0	1		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-7|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MULTI-SECPEP	A375_MHC_IP_R2	2	533.69091796875	2	533.291702	1064.56885	-1.0744	-0.00057296	0.013741	7.328E-06	-1.0607	-0.00056564	533.2917447391409	21.097	2.139	21.716	21.371	23.51	0.61932					70	41	4	0	0	0	0.087712	1	6582	6582		66.457	38.828	1	17201000			27407	6487	19582	19742	26861	26861		346			0.03914973605242267
KTFQGKPIM	9	Unmodified	_KTFQGKPIM_					0	0	0		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-7|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MULTI-SECPEP	A375_MHC_IP_R2	2	525.9727783203125	2	525.294245	1048.57394	-0.85239	-0.00044775	-0.5609	-0.00029464	-1.4133	-0.00074239	525.2940048965187	26.541	0.71244	27.201	26.907	27.62	0.65992					42	13	4	0	0	0	0.03341	1	9049	9049		93.166	44.82	1	25439000			27408	6487	19582	19743	26862	26862					0.05159277467851098
KTFRIKRFL	9	Unmodified	_KTFRIKRFL_					0	0	0		ENSG00000198918|ENST00000361575|RPL39	ENSG00000198918|ENST00000361575|RPL39	ENSG00000198918|ENST00000361575|RPL39	MULTI-MSMS	A375_MHC_IP_R1	1	403.6243896484375	3	403.592392	1207.75535	-0.10333	-4.1702E-05	0.26834	0.0001083	0.16501	6.6598E-05	403.59247658267685	38.977	1.4721	38.977	38.628	40.1	0					78	28	4	0	0	0	0.52905	2	13374	13374;13477		18.373	7.5736	1	36758000			27409	9370	19583	19744	26863;26864	26863					0.1597795855593631
KTFRIKRFL	9	Unmodified	_KTFRIKRFL_					0	0	0		ENSG00000198918|ENST00000361575|RPL39	ENSG00000198918|ENST00000361575|RPL39	ENSG00000198918|ENST00000361575|RPL39	MULTI-MSMS	A375_MHC_IP_R2	2	403.99237060546875	3	403.592392	1207.75535	-0.21151	-8.5363E-05	0.011176	4.5105E-06	-0.20033	-8.0852E-05	403.59238396681155	37.681	1.025	38.455	38.124	39.149	0.77451					58	19	4	0	0	0	0.69884	1	14009	14009		7.1017	2.5729	1	51438000			27410	9370	19583	19744	26865	26865					0.1597795855593631
KTFTGHREW	9	Unmodified	_KTFTGHREW_					0	0	0		ENSG00000007168|ENST00000397195|PAFAH1B1;ENST00000572915.6_1_17:2573570-2586914:+|nuORF;nc|ENSG00000007168|P43034-2|PAFAH1B1	ENSG00000007168|ENST00000397195|PAFAH1B1	ENSG00000007168|ENST00000397195|PAFAH1B1	MULTI-MSMS	A375_MHC_IP_R1	1	388.26495361328125	3	387.86484	1160.57269	0.2101	8.149E-05	-1.8838	-0.00073065	-1.6737	-0.00064916	388.1982335853866	19.97	0.91375	19.97	19.471	20.384	0					52	17	5	0	0	0	0.28625	2	5109	5109;5130		31.636	14.193	1	15760000			27411	935	19584	19745	26866;26867	26866					-0.0011722057668066554
KTFTIKRFL	9	Unmodified	_KTFTIKRFL_					0	0	0		ENSG00000163923|ENST00000296277|RPL39L	ENSG00000163923|ENST00000296277|RPL39L	ENSG00000163923|ENST00000296277|RPL39L	MULTI-MSMS	A375_MHC_IP_R1	1	385.64129638671875	3	385.241248	1152.70191	0.34646	0.00013347	-0.18722	-7.2126E-05	0.15923	6.1344E-05	385.241185106216	51.143	0.30472	51.143	50.966	51.27	0					9	5	2	0	0	0	0.67787	1	18170	18170		8.9762	5.6566	1	3373800			27412	6744	19585	19746	26868	26868					0.13167161053411292
KTFTIKRFL	9	Unmodified	_KTFTIKRFL_					0	0	0		ENSG00000163923|ENST00000296277|RPL39L	ENSG00000163923|ENST00000296277|RPL39L	ENSG00000163923|ENST00000296277|RPL39L	MULTI-MSMS	A375_MHC_IP_R2	2	385.6413879394531	3	385.241248	1152.70191	-0.33543	-0.00012922	0.45012	0.0001734	0.11468	4.4181E-05	385.2414528623195	50.08	0.30471	50.834	50.65	50.955	0.75406					10	5	3	0	0	0	0.58268	1	18853	18853		15.739	9.1082	1	2522300			27413	6744	19585	19746	26869	26869					0.13167161053411292
KTFTTQETI	9	Unmodified	_KTFTTQETI_					0	0	0		nc|ENSG00000105220|P06744-2|GPI;ENSG00000105220|ENST00000356487|GPI;CON__Q3ZBD7	nc|ENSG00000105220|P06744-2|GPI;CON__Q3ZBD7	nc|ENSG00000105220|P06744-2|GPI	MULTI-SECPEP	A375_MHC_IP_R1	1	535.1818237304688	2	534.782222	1067.54989	-0.46629	-0.00024936	-0.75404	-0.00040325	-1.2203	-0.00065261	534.781722655818	35.688	0.61246	35.688	35.421	36.033	0					27	11	4	0	0	0	0.059637	1	11856	11856		79.427	29.873	1	20520000		+	27414	2576;621	19586	19747	26870	26870					0.01881715515196447
KTFTTQETI	9	Unmodified	_KTFTTQETI_					0	0	0		nc|ENSG00000105220|P06744-2|GPI;ENSG00000105220|ENST00000356487|GPI;CON__Q3ZBD7	nc|ENSG00000105220|P06744-2|GPI;CON__Q3ZBD7	nc|ENSG00000105220|P06744-2|GPI	MULTI-SECPEP	A375_MHC_IP_R2	2	535.1815185546875	2	534.782222	1067.54989	-1.0144	-0.0005425	-0.33196	-0.00017753	-1.3464	-0.00072003	534.7820310955411	34.872	0.91215	35.635	35.068	35.98	0.76338					39	17	4	0	0	0	0.11751	1	12599	12599		55.235	11.462	1	19761000		+	27415	2576;621	19586	19747	26871	26871					0.01881715515196447
KTGITAVYGGS	11	Unmodified	_KTGITAVYGGS_					0	0	0			REV__ENST00000469346.1_1_X:46940570-46944097:+|nuORF	REV__ENST00000469346.1_1_X:46940570-46944097:+|nuORF	MSMS	A375_MHC_IP_R1	1	527.63330078125	2	527.282389	1052.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.442	1	19.442	18.942	19.942	0								0	0	0	0.16213	1	4826	4826		7.609	0.31972	1		+		27416	18578	19587	19748	26872	26872					0.026051352350577872
KTGKEFDSL	9	Unmodified	_KTGKEFDSL_					0	0	0			REV__XRN2|p.P582L|1|0.32|ENSG00000088930|chr20:21348225-21348225|C/T|missense_variant	REV__XRN2|p.P582L|1|0.32|ENSG00000088930|chr20:21348225-21348225|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	513.1685180664062	2	512.769114	1023.52368	-0.09061	-4.6462E-05	-0.54839	-0.0002812	-0.639	-0.00032766	512.7687189334032	38.935	0.45675	38.935	38.628	39.085	0					14	8	2	0	0	0	0.58047	1	13282	13282		15.847	1.9411	1	2464800	+		27417	29006	19588	19749	26873	26873					0.01285446343717922
KTGKFLKRF	9	Unmodified	_KTGKFLKRF_					0	0	0		nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-MSMS	A375_MHC_IP_R1	1	375.9694519042969	3	375.569476	1123.6866	0.1516	5.6935E-05	0.066344	2.4917E-05	0.21794	8.1852E-05	375.90382185709745	23.335	0.61129	23.335	23.024	23.635	0					22	11	3	0	0	0	0.59859	1	6410	6410		14.957	7.9201	1	4268200			27418	1104	19589	19750	26874	26874					0.12970294256206216
KTGLVSSTW	9	Unmodified	_KTGLVSSTW_					0	0	0		ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	490.1661071777344	2	489.766374	977.518196	-0.28442	-0.0001393	-0.19984	-9.7877E-05	-0.48426	-0.00023718	489.7663321339906	50.734	0.71098	50.734	50.408	51.119	0					26	13	3	0	0	0	0.11715	2	17990	17990;18028		47.594	13.193	1	7326900			27419	6248	19590	19751	26875;26876	26875					0.028537675519032746
KTGLVSSTW	9	Unmodified	_KTGLVSSTW_					0	0	0		ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	490.16607666015625	2	489.766374	977.518196	-0.80691	-0.0003952	0.16042	7.8569E-05	-0.64649	-0.00031663	489.7665218033599	49.768	0.86473	50.522	50.193	51.057	0.75406					27	16	2	0	0	0	0.23894	1	18712	18712		47.594	14.809	1	8562300			27420	6248	19590	19751	26877	26877					0.028537675519032746
KTGLVTTTW	9	Unmodified	_KTGLVTTTW_					0	0	0		ENST00000547809.5_1_12:105570964-105626916:-|nuORF;nc|ENSG00000136044|Q8NEU8-2|APPL2;ENSG00000136044|ENST00000258530|APPL2;nc|ENSG00000136044|Q8NEU8-3|APPL2	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	504.1816101074219	2	503.782025	1005.5495	-0.32479	-0.00016362	-0.87771	-0.00044217	-1.2025	-0.00060579	503.7819505109946	57.192	1.273	57.192	56.498	57.771	0					54	24	4	0	0	0	0.16595	1	20467	20467		53.404	20.618	1	17802000			27421	4745	19591	19752	26878	26878					0.04694340585979262
KTGLVTTTW	9	Unmodified	_KTGLVTTTW_					0	0	0		ENST00000547809.5_1_12:105570964-105626916:-|nuORF;nc|ENSG00000136044|Q8NEU8-2|APPL2;ENSG00000136044|ENST00000258530|APPL2;nc|ENSG00000136044|Q8NEU8-3|APPL2	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1814880371094	2	503.782025	1005.5495	-0.95574	-0.00048149	-0.53605	-0.00027005	-1.4918	-0.00075154	503.7819841194424	56.278	0.9706	57.028	56.642	57.612	0.75014					46	18	4	0	0	0	0.090157	1	21229	21229		59.368	28.732	1	15145000			27422	4745	19591	19752	26879	26879					0.04694340585979262
KTGPRQPKL	9	Unmodified	_KTGPRQPKL_					0	0	0			REV__CYLC2|p.P38L|1|0.22|ENSG00000155833|chr9:103003196-103003196|C/T|missense_variant	REV__CYLC2|p.P38L|1|0.22|ENSG00000155833|chr9:103003196-103003196|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	513.1945190429688	2	512.816733	1023.61891	-0.23628	-0.00012117	-0.34413	-0.00017647	-0.58041	-0.00029764	512.8166132082907	39.197	0.66075	39.197	38.78	39.441	0					31	12	3	0	0	0	0.71341	1	13210	13210		13.042	1.4022	1	10009000	+		27423	15945	19592	19753	26880	26880					0.10804844325411977
KTGTAYTF	8	Unmodified	_KTGTAYTF_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-SECPEP	A375_MHC_IP_R1	1	445.1427307128906	2	444.726718	887.438883	-0.081176	-3.6101E-05	0.0062063	2.7601E-06	-0.07497	-3.3341E-05	444.72668214780384	34.633	0.60936	34.633	34.353	34.963	0					21	11	2	0	0	0	0.55873	1	11425	11425		49.933	0	1	119290000			27424	2826	19593	19754	26881	26881					-0.009338794022482944
KTGTKELKTF	10	Unmodified	_KTGTKELKTF_					0	0	0		ENST00000517831.5_1_8:86133134-86133284:+|nuORF	ENST00000517831.5_1_8:86133134-86133284:+|nuORF	ENST00000517831.5_1_8:86133134-86133284:+|nuORF	MSMS	A375_MHC_IP_R2	2	384.9380798339844	3	384.892284	1151.65502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.4	1	48.161	47.661	48.661	0.76128								0	0	0	0.15365	1	17772	17772		8.9762	0.82072	1				27425	12964	19594	19755	26882	26882					0.08526256711593305
KTHEGLIPR	9	Unmodified	_KTHEGLIPR_					0	0	0			REV__nc|ENSG00000183023|P32418-2|SLC8A1	REV__nc|ENSG00000183023|P32418-2|SLC8A1	MULTI-SECPEP	A375_MHC_IP_R1	1	351.2729187011719	3	350.873336	1049.59818	-0.34016	-0.00011935	-0.46022	-0.00016148	-0.80038	-0.00028083	350.8730783747226	19.243	0.088337	19.243	19.23	19.318	0					4	2	2	0	0	0	0.70759	1	4690	4690		15.739	4.2207	1	38560000	+		27426	21728	19595	19756	26883	26883					0.07536253945750104
KTIAIGKVL	9	Unmodified	_KTIAIGKVL_					0	0	0		nc|ENSG00000103342|P15170|GSPT1;nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1;ENSG00000189369|ENST00000340438|GSPT2	nc|ENSG00000103342|P15170|GSPT1;ENSG00000189369|ENST00000340438|GSPT2	ENSG00000189369|ENST00000340438|GSPT2	MULTI-SECPEP	A375_MHC_IP_R2	2	472.2203369140625	2	471.820953	941.627353	-0.62774	-0.00029618	-0.10029	-4.7321E-05	-0.72803	-0.0003435	471.8207872344793	44.56	0.40591	45.329	45.086	45.492	0.7691					14	7	2	0	0	0	0.035151	1	16621	16621		84.522	34.589	1	2826200			27427	2445;8982	19596	19757	26884	26884					0.15420398242031297
KTIAVYEEF	9	Unmodified	_KTIAVYEEF_					0	0	0		nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1;nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1;ENST00000478809.2_1_10:108360440-108378027:-|nuORF	nc|ENSG00000108018|Q8WY21-4|SORCS1	nc|ENSG00000108018|Q8WY21-4|SORCS1	MULTI-SECPEP	A375_MHC_IP_R1	1	550.3805541992188	2	550.28714	1098.55973	-0.75915	-0.00041775	0.43664	0.00024028	-0.32251	-0.00017747	550.2872918176707	66.599	0.50935	66.599	66.326	66.836	0					26	9	3	0	0	0	0.18869	1	24141	24141		59.368	30.287	1	5605100			27428	2778	19597	19758	26885	26885					0.01438903520556778
KTIAVYEEF	9	Unmodified	_KTIAVYEEF_					0	0	0		nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1;nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1;ENST00000478809.2_1_10:108360440-108378027:-|nuORF	nc|ENSG00000108018|Q8WY21-4|SORCS1	nc|ENSG00000108018|Q8WY21-4|SORCS1	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6868286132812	2	550.28714	1098.55973	-0.97539	-0.00053674	0.24081	0.00013251	-0.73458	-0.00040423	550.2872597003587	65.762	0.55949	66.5	66.222	66.782	0.73811					23	10	3	0	0	0	0.30942	1	24907	24907		49.527	27.99	1	6227500			27429	2778	19597	19758	26886	26886					0.01438903520556778
KTIDKKTFY	9	Unmodified	_KTIDKKTFY_					0	0	0		ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	MULTI-MSMS	A375_MHC_IP_R1	1	382.2851867675781	3	381.88513	1142.63356	0.44309	0.00016921	-0.48136	-0.00018382	-0.038265	-1.4613E-05	381.8849366403548	20.46	0.50978	20.46	20.18	20.69	0					24	9	3	0	0	0	0.033808	1	5225	5225		71.708	20.293	1	16083000			27430	8186	19598	19759	26887	26887					0.06794871682882331
KTIDKKTFY	9	Unmodified	_KTIDKKTFY_					0	0	0		ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	MULTI-MSMS	A375_MHC_IP_R1	1	572.7236938476562	2	572.324057	1142.63356	-0.14689	-8.4066E-05	-0.37031	-0.00021194	-0.5172	-0.00029601	572.3237670315889	20.409	0.30391	20.409	20.283	20.587	0					11	5	3	0	0	0	0.044232	1	5252	5252		70.929	37.484	1	1958100			27431	8186	19598	19759	26888	26888					0.06794871682882331
KTIDKKTFY	9	Unmodified	_KTIDKKTFY_					0	0	0		ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	MULTI-SECPEP	A375_MHC_IP_R2	2	381.900146484375	3	381.88513	1142.63356	-0.34675	-0.00013242	0.27842	0.00010632	-0.068334	-2.6096E-05	381.8852728854641	19.158	0.5627	19.762	19.423	19.986	0.60308					28	12	4	0	0	0	0.26374	1	5841	5841		47.732	3.7501	1	13932000			27432	8186	19598	19759	26889	26889					0.06794871682882331
KTIDPELLGKM	11	Oxidation (M)	_KTIDPELLGKM(Oxidation (M))_		KTIDPELLGKM(1)		KTIDPELLGKM(82)	0	0	1		nc|ENSG00000135677|P15586-2|GNS;ENSG00000135677|ENST00000258145|GNS;HMGA2-GNS|1|fusion	nc|ENSG00000135677|P15586-2|GNS	nc|ENSG00000135677|P15586-2|GNS	MULTI-MSMS	A375_MHC_IP_R1	1	631.2467041015625	2	630.847039	1259.67952	-0.99375	-0.0006269	-0.18246	-0.0001151	-1.1762	-0.00074201	630.8468999653717	41.342	0.35616	41.342	41.164	41.521	0					12	6	2	0	0	0	0.036232	1	14301	14301		81.923	65.774	1	2023200			27433	4703	19599	19760	26890	26890		247			0.060071488028142994
KTIDPELLGKM	11	Oxidation (M)	_KTIDPELLGKM(Oxidation (M))_					0	0	1		nc|ENSG00000135677|P15586-2|GNS;ENSG00000135677|ENST00000258145|GNS;HMGA2-GNS|1|fusion	nc|ENSG00000135677|P15586-2|GNS	nc|ENSG00000135677|P15586-2|GNS	MULTI-MATCH	A375_MHC_IP_R2	2		2	630.847039	1259.67952	-0.94674	-0.00059725	1.3151	0.00082965	0.3684	0.0002324	630.8479803104514	40.651	0.35666	41.426	41.183	41.54	0.77451	0.042142	0.0013368	NaN	81.923	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2589200			27434	4703	19599	19760				247			0.060071488028142994
KTIDPELLGKM	11	Unmodified	_KTIDPELLGKM_					0	0	0		nc|ENSG00000135677|P15586-2|GNS;ENSG00000135677|ENST00000258145|GNS;HMGA2-GNS|1|fusion	nc|ENSG00000135677|P15586-2|GNS	nc|ENSG00000135677|P15586-2|GNS	MULTI-SECPEP	A375_MHC_IP_R2	2	623.248779296875	2	622.849581	1243.68461	-1.11	-0.00069135	-1.6938	-0.001055	-2.8038	-0.0017463	622.8492805115845	58.877	0.96882	59.624	58.927	59.896	0.74714					20	18	2	0	0	0	0.98404	1	22290	22290		25.155	22.16	1	1816800			27435	4703	19599	19761	26891	26891					0.07251452665445868
KTIDPKVAF	9	Unmodified	_KTIDPKVAF_					0	0	0		ENST00000579531.5_1_17:55334408-55351634:+|nuORF;ENST00000584476.1_1_17:55334873-55339700:+|nuORF;nc|ENSG00000153944|Q96DH6-2|MSI2;ENSG00000153944|ENST00000284073|MSI2;ENSG00000135097|ENST00000257552|MSI1	ENST00000579531.5_1_17:55334408-55351634:+|nuORF	ENST00000579531.5_1_17:55334408-55351634:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	510.19964599609375	2	509.800217	1017.58588	-0.78855	-0.000402	0.075497	3.8489E-05	-0.71305	-0.00036351	509.8002074274778	41.547	0.56347	41.547	41.317	41.88	0					31	10	4	0	0	0	0.010905	1	14317	14317		151.48	11.698	1	29760000			27436	4645	19600	19762	26892	26892					0.07779217482709555
KTIDPKVAF	9	Unmodified	_KTIDPKVAF_					0	0	0		ENST00000579531.5_1_17:55334408-55351634:+|nuORF;ENST00000584476.1_1_17:55334873-55339700:+|nuORF;nc|ENSG00000153944|Q96DH6-2|MSI2;ENSG00000153944|ENST00000284073|MSI2;ENSG00000135097|ENST00000257552|MSI1	ENST00000579531.5_1_17:55334408-55351634:+|nuORF	ENST00000579531.5_1_17:55334408-55351634:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	510.1997985839844	2	509.800217	1017.58588	-0.91444	-0.00046618	0.34659	0.00017669	-0.56784	-0.00028949	509.8003532424316	40.719	0.81296	41.494	41.133	41.946	0.77451					37	15	4	0	0	0	0.021951	1	15056	15056		114.19	10.363	1	30289000			27437	4645	19600	19762	26893	26893					0.07779217482709555
KTIDQRTTAY	10	Unmodified	_KTIDQRTTAY_					0	0	0			REV__nc|ENSG00000006025|Q9BZF2-2|OSBPL7	REV__nc|ENSG00000006025|Q9BZF2-2|OSBPL7	MULTI-MSMS	A375_MHC_IP_R2	2	599.2167358398438	2	598.817127	1195.6197	-0.81648	-0.00048892	0.69784	0.00041788	-0.11864	-7.1045E-05	598.8171132414955	23.608	0.20382	24.238	24.129	24.333	0.63014					6	3	2	0	0	0	0.67901	1	7665	7665		14.957	1.4385	1	4606700	+		27438	16128	19601	19763	26894	26894					0.029715941838276194
KTIDYIQFL	9	Unmodified	_KTIDYIQFL_					0	0	0		nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX;ENST00000588320.1_1_17:40720799-40723580:+|nuORF	nc|ENSG00000108788|Q9UH92-2|MLX	nc|ENSG00000108788|Q9UH92-2|MLX	MULTI-MSMS	A375_MHC_IP_R1	1	571.2185668945312	2	570.818607	1139.62266	-0.048078	-2.7444E-05	0.28991	0.00016549	0.24183	0.00013804	570.8185902910176	107.45	0.76669	107.45	106.98	107.75	0					30	14	4	0	0	0	0.015356	1	39422	39422		89.401	17.478	1	5017600			27439	2836	19602	19764	26895	26895					0.0584346930859283
KTIDYIQFL	9	Unmodified	_KTIDYIQFL_					0	0	0		nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX;ENST00000588320.1_1_17:40720799-40723580:+|nuORF	nc|ENSG00000108788|Q9UH92-2|MLX	nc|ENSG00000108788|Q9UH92-2|MLX	MULTI-MSMS	A375_MHC_IP_R2	2	571.2188110351562	2	570.818607	1139.62266	-0.35302	-0.00020151	-0.14294	-8.1595E-05	-0.49596	-0.0002831	570.8184755938216	106.66	0.61092	107.42	107.04	107.65	0.75977					25	11	3	0	0	0	0.035419	1	40262	40262		70.332	24.632	1	4547300			27440	2836	19602	19764	26896	26896					0.0584346930859283
KTIEDVREF	9	Unmodified	_KTIEDVREF_					0	0	0		ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	MULTI-MSMS	A375_MHC_IP_R1	1	569.2005004882812	2	568.800946	1135.58734	-0.62457	-0.00035525	-0.20023	-0.00011389	-0.82479	-0.00046914	568.8009524073591	36.603	0.35581	36.603	36.389	36.745	0					12	6	2	0	0	0	0.33243	1	12284	12284		28.234	5.4587	1	2236300			27441	2572	19603	19765	26897	26897					0.02496806780800398
KTIEDVREF	9	Unmodified	_KTIEDVREF_					0	0	0		ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	MULTI-MATCH	A375_MHC_IP_R2	2		2	568.800946	1135.58734	-0.52607	-0.00029923	-0.37853	-0.00021531	-0.9046	-0.00051454	568.8008507403867	35.766	0.407	36.529	36.283	36.69	0.76338	-0.03703	-0.00010981	NaN	28.234	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2911600			27442	2572	19603	19765							0.02496806780800398
KTIETSPSL	9	Unmodified	_KTIETSPSL_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|457|18.28|0.76|4.59|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-SECPEP	A375_MHC_IP_R1	1	488.67120361328125	2	488.27149	974.528426	-0.32695	-0.00015964	-0.2972	-0.00014511	-0.62415	-0.00030475	488.27133611817	34.278	0.40387	34.278	34.001	34.405	0					11	7	2	0	0	0	0.11849	1	11290	11290		53.404	19.002	1	7281700			27443	440	19604	19766	26898	26898					0.0401433048649551
KTIFIVARL	9	Unmodified	_KTIFIVARL_					0	0	0			REV__XCL2|p.S54F|2|0.25|ENSG00000143185|chr1:168542008-168542008|G/A|missense_variant	REV__XCL2|p.S54F|2|0.25|ENSG00000143185|chr1:168542008-168542008|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	531.4230346679688	2	530.847502	1059.68045	-0.63671	-0.00033799	-0.18133	-9.6256E-05	-0.81803	-0.00043425	530.8473253913334	82.788	0.75601	83.531	83.195	83.951	0.74293					34	14	4	0	0	0	0.68046	1	31402	31402		8.7454	0	1	8224800	+		27444	19337	19605	19767	26899	26899					0.15299776024676248
KTIGLREVW	9	Unmodified	_KTIGLREVW_					0	0	0		EZR|p.V477Cfs*5|1|0.38|ENSG00000092820|chr6:158767429-158767429|G/-|frameshift_variant;ENSG00000092820|ENST00000367075|EZR;ENSG00000147065|ENST00000360270|MSN	EZR|p.V477Cfs*5|1|0.38|ENSG00000092820|chr6:158767429-158767429|G/-|frameshift_variant;ENSG00000147065|ENST00000360270|MSN	EZR|p.V477Cfs*5|1|0.38|ENSG00000092820|chr6:158767429-158767429|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	551.7247314453125	2	551.324391	1100.63423	-0.50726	-0.00027966	0.32095	0.00017695	-0.1863	-0.00010271	551.3245983536309	54.695	0.4575	54.695	54.467	54.924	0					13	8	2	0	0	0	0.58315	1	19567	19567		28.234	28.234	1	2834800			27445	2011;5654	19606	19768	26900	26900					0.08793711122621062
KTIGLREVW	9	Unmodified	_KTIGLREVW_					0	0	0		EZR|p.V477Cfs*5|1|0.38|ENSG00000092820|chr6:158767429-158767429|G/-|frameshift_variant;ENSG00000092820|ENST00000367075|EZR;ENSG00000147065|ENST00000360270|MSN	EZR|p.V477Cfs*5|1|0.38|ENSG00000092820|chr6:158767429-158767429|G/-|frameshift_variant;ENSG00000147065|ENST00000360270|MSN	EZR|p.V477Cfs*5|1|0.38|ENSG00000092820|chr6:158767429-158767429|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	368.2853698730469	3	367.885353	1100.63423	-0.25752	-9.4737E-05	0.448	0.00016481	0.19048	7.0075E-05	367.88539517565124	53.777	0.56555	54.528	54.198	54.764	0.75105					27	10	4	0	0	0	0.33243	1	20293	20293		28.234	6.6435	1	5386700			27446	2011;5654	19606	19768	26901	26901					0.08793711122621062
KTIGLREVW	9	Unmodified	_KTIGLREVW_					0	0	0		EZR|p.V477Cfs*5|1|0.38|ENSG00000092820|chr6:158767429-158767429|G/-|frameshift_variant;ENSG00000092820|ENST00000367075|EZR;ENSG00000147065|ENST00000360270|MSN	EZR|p.V477Cfs*5|1|0.38|ENSG00000092820|chr6:158767429-158767429|G/-|frameshift_variant;ENSG00000147065|ENST00000360270|MSN	EZR|p.V477Cfs*5|1|0.38|ENSG00000092820|chr6:158767429-158767429|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	551.72412109375	2	551.324391	1100.63423	-1.242	-0.00068472	-0.038162	-2.104E-05	-1.2801	-0.00070576	551.3243755004803	53.756	0.51328	54.507	54.147	54.661	0.75105					17	9	3	0	0	0	0.40495	1	20299	20299		27.223	27.223	1	2363000			27447	2011;5654	19606	19768	26902	26902					0.08793711122621062
KTIITKNLHY	10	Unmodified	_KTIITKNLHY_					0	0	0		ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	MULTI-MSMS	A375_MHC_IP_R1	1	411.31158447265625	3	410.911679	1229.71321	-0.027768	-1.141E-05	0.089349	3.6715E-05	0.061582	2.5305E-05	410.91165192127414	27.553	0.35302	27.553	27.331	27.684	0					15	6	3	0	0	0	0.040521	1	8370	8370		78.61	37.263	1	6934000			27448	3851	19607	19769	26903	26903					0.10753938356901926
KTIITKNLHY	10	Unmodified	_KTIITKNLHY_					0	0	0		ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	MULTI-MSMS	A375_MHC_IP_R2	2	411.3116149902344	3	410.911679	1229.71321	-0.23974	-9.8513E-05	0.22141	9.0978E-05	-0.018336	-7.5344E-06	410.9116814522485	26.831	0.35767	27.491	27.262	27.62	0.65992					15	6	3	0	0	0	0.012187	1	9115	9115		90.964	46.02	1	6614900			27449	3851	19607	19769	26904	26904					0.10753938356901926
KTIKKKFCD	9	Unmodified	_KTIKKKFCD_					0	0	0		tr|U7SMK4|U7SMK4_FUSNUCyclicnucleotide-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01903PE=4SV=1	tr|U7SMK4|U7SMK4_FUSNUCyclicnucleotide-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01903PE=4SV=1	tr|U7SMK4|U7SMK4_FUSNUCyclicnucleotide-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01903PE=4SV=1	MSMS	A375_MHC_IP_R2	2	555.7366943359375	2	555.820627	1109.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.91	1	142.94	142.44	143.44	0.030731								0	0	0	0.15486	1	55862	55862		3.5965	0	1				27450	29530	19608	19770	26905	26905					0.07627235530685539
KTIKLWNTL	9	Unmodified	_KTIKLWNTL_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF;ENST00000502890.5_1_5:180667315-180668686:-|nuORF;ENST00000507261.1_1_5:180668485-180669312:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-MSMS	A375_MHC_IP_R1	1	559.242431640625	2	558.842416	1115.67028	-0.45762	-0.00025574	0.13885	7.7594E-05	-0.31877	-0.00017814	558.8425918128991	63.393	0.61504	63.393	63.069	63.684	0					29	11	4	0	0	0	0.00043539	1	22879	22879		202.97	136.51	1	10042000			27451	9470	19609	19771	26906	26906					0.1170716829947196
KTIKLWNTL	9	Unmodified	_KTIKLWNTL_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF;ENST00000502890.5_1_5:180667315-180668686:-|nuORF;ENST00000507261.1_1_5:180668485-180669312:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-SECPEP	A375_MHC_IP_R2	2	559.2417602539062	2	558.842416	1115.67028	-0.8443	-0.00047183	-0.057303	-3.2023E-05	-0.9016	-0.00050385	558.8424482820707	62.316	0.60978	63.059	62.774	63.383	0.74263					29	11	3	0	0	0	0.0013475	1	23584	23584		216.42	140.66	1	9581100			27452	9470	19609	19771	26907	26907					0.1170716829947196
KTILERNNF	9	Unmodified	_KTILERNNF_					0	0	0		ENSG00000111911|ENST00000229633|HINT3	ENSG00000111911|ENST00000229633|HINT3	ENSG00000111911|ENST00000229633|HINT3	MULTI-MSMS	A375_MHC_IP_R1	1	379.2804260253906	3	378.880379	1133.61931	0.22502	8.5255E-05	1.9917	0.0007546	2.2167	0.00083985	378.88033715333785	33.056	0.60799	33.056	32.785	33.393	0					27	11	3	0	0	0	0.14922	2	10821	10776;10821		45.74	30.491	1	8866600			27453	3041	19610	19772	26908;26909	26909					0.05784219254610434
KTILERNNF	9	Unmodified	_KTILERNNF_					0	0	0		ENSG00000111911|ENST00000229633|HINT3	ENSG00000111911|ENST00000229633|HINT3	ENSG00000111911|ENST00000229633|HINT3	MULTI-SECPEP	A375_MHC_IP_R1	1	568.216796875	2	567.81693	1133.61931	-0.45394	-0.00025775	1.0956	0.00062212	0.6417	0.00036437	567.8169808622504	33.165	0.45473	33.165	32.836	33.291	0					22	8	3	0	0	0	0.24655	1	10805	10805		63.227	11.812	1	7846800			27454	3041	19610	19772	26910	26910					0.05784219254610434
KTILERNNF	9	Unmodified	_KTILERNNF_					0	0	0		ENSG00000111911|ENST00000229633|HINT3	ENSG00000111911|ENST00000229633|HINT3	ENSG00000111911|ENST00000229633|HINT3	MULTI-SECPEP	A375_MHC_IP_R2	2	568.2161254882812	2	567.81693	1133.61931	-0.39356	-0.00022347	0.37383	0.00021227	-0.019735	-1.1206E-05	567.8165886975273	32.35	0.40715	33.087	32.806	33.213	0.73692					19	7	3	0	0	0	0.49701	1	11537	11537		40.239	34.033	1	6621700			27455	3041	19610	19772	26911	26911					0.05784219254610434
KTILPNPQS	9	Unmodified	_KTILPNPQS_					0	0	0		ENST00000492977.5_1_1:202119404-202127449:-|nuORF;ENSG00000143851|ENST00000691036|PTPN7;nc|ENSG00000143851|P35236-2|PTPN7;nc|ENSG00000143851|P35236-3|PTPN7	ENST00000492977.5_1_1:202119404-202127449:-|nuORF	ENST00000492977.5_1_1:202119404-202127449:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	499.13507080078125	2	499.287474	996.560395	-0.56868	-0.00028393	-0.35489	-0.00017719	-0.92357	-0.00046113	499.287373051379	30.475	0.80884	31.193	30.759	31.567	0.71857					36	15	3	0	0	0	0.59098	1	10632	10632		2.2828	1.0894	1	3833300			27456	5443	19611	19773	26912	26912					0.06197742960284813
KTIRQKFPL	9	Unmodified	_KTIRQKFPL_					0	0	0		RFX6|p.G167E|1|0.71|ENSG00000185002|chr6:116880663-116880663|G/A|missense_variant;ENSG00000185002|ENST00000332958|RFX6	RFX6|p.G167E|1|0.71|ENSG00000185002|chr6:116880663-116880663|G/A|missense_variant	RFX6|p.G167E|1|0.71|ENSG00000185002|chr6:116880663-116880663|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	378.276611328125	3	377.572998	1129.69716	0.022067	8.3319E-06	1.3381	0.00050524	1.3602	0.00051357	377.5730530066848	41.589	0.81556	41.589	41.317	42.132	0					37	15	4	0	0	0	0.66474	1	14374	14374		10.151	0.6066	1	3859600			27457	8630	19612	19774	26913	26913					0.13750276910650427
KTIRQKFPL	9	Unmodified	_KTIRQKFPL_					0	0	0		RFX6|p.G167E|1|0.71|ENSG00000185002|chr6:116880663-116880663|G/A|missense_variant;ENSG00000185002|ENST00000332958|RFX6	RFX6|p.G167E|1|0.71|ENSG00000185002|chr6:116880663-116880663|G/A|missense_variant	RFX6|p.G167E|1|0.71|ENSG00000185002|chr6:116880663-116880663|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	378.2926025390625	3	377.572998	1129.69716	0.19611	7.4045E-05	-1.2371	-0.00046708	-1.041	-0.00039304	377.57249710087433	41.902	0.97084	42.676	42.249	43.22	0.77451					26	18	2	0	0	0	0.74597	1	15505	15505		8.4443	5.372	1	2369900			27458	8630	19612	19774	26914	26914					0.13750276910650427
KTISNGFGF	9	Unmodified	_KTISNGFGF_					0	0	0		ENSG00000132155|ENST00000251849|RAF1;nc|ENSG00000132155|P04049-2|RAF1	ENSG00000132155|ENST00000251849|RAF1	ENSG00000132155|ENST00000251849|RAF1	MULTI-MSMS	A375_MHC_IP_R1	1	486.1528625488281	2	485.753267	969.491981	-0.28063	-0.00013631	-0.078514	-3.8139E-05	-0.35914	-0.00017445	485.7531656962335	61.407	0.40962	61.407	61.176	61.585	0					17	7	3	0	0	0	0.02559	1	22134	22134		78.728	4.3053	1	3051900			27459	4376	19613	19775	26915	26915					0.006014983804334406
KTISNGFGF	9	Unmodified	_KTISNGFGF_					0	0	0		ENSG00000132155|ENST00000251849|RAF1;nc|ENSG00000132155|P04049-2|RAF1	ENSG00000132155|ENST00000251849|RAF1	ENSG00000132155|ENST00000251849|RAF1	MULTI-MSMS	A375_MHC_IP_R2	2	486.1528015136719	2	485.753267	969.491981	-0.89738	-0.00043591	0.028177	1.3687E-05	-0.8692	-0.00042222	485.7532289909775	60.553	0.61181	61.298	60.955	61.566	0.74503					25	11	3	0	0	0	0.012843	1	22925	22925		92.653	18.231	1	2623700			27460	4376	19613	19775	26916	26916					0.006014983804334406
KTKADGSFRL	10	Unmodified	_KTKADGSFRL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;NOMO1|p.Q465Kfs*4|1|0.07|ENSG00000103512|chr16:14863184-14863185|-/AAGAC|frameshift_variant	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-SECPEP	A375_MHC_IP_R1	1	374.90850830078125	3	374.880379	1121.61931	0.060109	2.2534E-05	-0.40332	-0.0001512	-0.34321	-0.00012866	374.8800967660743	23.813	0.15159	23.813	23.687	23.838	0					4	2	2	0	0	0	0.85215	1	6603	6603		15.538	9.3466	1	1611300			27461	2432	19614	19776	26917	26917					0.06336219254603748
KTKAKSINYCE	11	Unmodified	_KTKAKSINYCE_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.Y6402Ffs*2|1|0.34|ENSG00000183091|chr2:151492486-151492487|AT/-|frameshift_variant;NEB|p.V4554Gfs*42|1|0.12|ENSG00000183091|chr2:151562738-151562739|-/CC|frameshift_variant;NEB|p.L4555Rfs*43|1|0.12|ENSG00000183091|chr2:151562736-151562737|-/CCTGCTCT|frameshift_variant;NEB|p.S2912Pfs*17|1|0.33|ENSG00000183091|chr2:151640012-151640012|A/-|frameshift_variant	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MULTI-SECPEP	A375_MHC_IP_R2	2	429.2909240722656	3	428.892067	1283.65437	-0.012825	-5.5004E-06	-0.91848	-0.00039393	-0.93131	-0.00039943	428.891125951943	148.05	1.1316	148.07	147.43	148.56	0.018692					109	62	2	0	0	0	1.0015	1	57600	57600		0.073264	0	1	137700			27462	8464	19615	19777	26918	26918					0.023890940002502248
KTKDGVREVF	10	Unmodified	_KTKDGVREVF_					0	0	0		RHOA|p.E172K|1|0.47|ENSG00000067560|chr3:49360277-49360277|C/T|missense_variant;ENSG00000067560|ENST00000418115|RHOA	RHOA|p.E172K|1|0.47|ENSG00000067560|chr3:49360277-49360277|C/T|missense_variant	RHOA|p.E172K|1|0.47|ENSG00000067560|chr3:49360277-49360277|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	393.95574951171875	3	393.555784	1177.64552	-0.24486	-9.6368E-05	0.19862	7.8167E-05	-0.046247	-1.8201E-05	393.55584231552575	23.614	0.35596	23.614	23.432	23.787	0					12	6	3	0	0	0	0.40891	1	6537	6537		33.632	8.7505	1	11036000			27463	1440	19616	19778	26919	26919					0.0638048842608896
KTKDGVREVF	10	Unmodified	_KTKDGVREVF_					0	0	0		RHOA|p.E172K|1|0.47|ENSG00000067560|chr3:49360277-49360277|C/T|missense_variant;ENSG00000067560|ENST00000418115|RHOA	RHOA|p.E172K|1|0.47|ENSG00000067560|chr3:49360277-49360277|C/T|missense_variant	RHOA|p.E172K|1|0.47|ENSG00000067560|chr3:49360277-49360277|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	393.95562744140625	3	393.555784	1177.64552	-0.52282	-0.00020576	0.062538	2.4612E-05	-0.46028	-0.00018115	393.5558320673176	22.698	0.51067	23.328	22.959	23.47	0.63014					21	9	3	0	0	0	0.32622	1	7218	7218		38.559	17.688	1	3206200			27464	1440	19616	19778	26920	26920					0.0638048842608896
KTKDHFLEV	9	Unmodified	_KTKDHFLEV_					0	0	0		ENSG00000103888|ENST00000394685|CEMIP	ENSG00000103888|ENST00000394685|CEMIP	ENSG00000103888|ENST00000394685|CEMIP	MULTI-MSMS	A375_MHC_IP_R1	1	373.2729797363281	3	372.873113	1115.59751	-0.0016325	-6.087E-07	0.26211	9.7733E-05	0.26047	9.7124E-05	372.87303715197817	30.381	0.45368	30.381	30.15	30.603	0					15	8	3	0	0	0	0.4875	1	9661	9661		19.626	5.4078	1	3840600			27465	2473	19617	19779	26921	26921					0.04433414506047484
KTKDIVNGL	9	Unmodified	_KTKDIVNGL_					0	0	0		nc|ENSG00000077549|P47756-1|CAPZB;ENSG00000077549|ENST00000264202|CAPZB	nc|ENSG00000077549|P47756-1|CAPZB	nc|ENSG00000077549|P47756-1|CAPZB	MULTI-MSMS	A375_MHC_IP_R1	1	494.6948547363281	2	494.295299	986.576045	-0.7013	-0.00034665	-0.051901	-2.5654E-05	-0.7532	-0.00037231	494.29525744287895	30.074	0.4023	30.074	29.899	30.301	0					12	7	2	0	0	0	0.0015806	1	9533	9533		148.27	55.102	1	19249000			27466	1659	19618	19780	26922	26922					0.08222029477315118
KTKDIVNGL	9	Unmodified	_KTKDIVNGL_					0	0	0		nc|ENSG00000077549|P47756-1|CAPZB;ENSG00000077549|ENST00000264202|CAPZB	nc|ENSG00000077549|P47756-1|CAPZB	nc|ENSG00000077549|P47756-1|CAPZB	MULTI-SECPEP	A375_MHC_IP_R2	2	494.6949462890625	2	494.295299	986.576045	-1.345	-0.00066485	0.017981	8.8877E-06	-1.3271	-0.00065596	494.2953622223289	29.348	0.40558	30.046	29.83	30.236	0.69872					17	7	3	0	0	0	0.01083	1	10217	10217		143.91	60.48	1	11989000			27467	1659	19618	19780	26923	26923					0.08222029477315118
KTKDLKSRS	9	Unmodified	_KTKDLKSRS_					0	0	0		ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2;CASP8AP2|p.E691Ifs*13|1|0.25|ENSG00000118412|chr6:89863779-89863780|AG/-|frameshift_variant;CASP8AP2|p.K1315Lfs*4|1|0.44|ENSG00000118412|chr6:89867231-89867249|TTAAAAGTTTGTTGCAAGG/-|frameshift_variant	ENSG00000118412|ENST00000551025|CASP8AP2	ENSG00000118412|ENST00000551025|CASP8AP2	MULTI-MSMS	A375_MHC_IP_R2	2	532.2162475585938	2	531.81693	1061.61931	-0.66919	-0.00035589	0.078294	4.1638E-05	-0.5909	-0.00031425	531.8167476502771	123.08	2.5791	123.46	122.92	125.5	0.3766					89	50	4	0	0	0	0.73804	1	47497	47497		3.5965	3.5965	1	79607000			27468	3541	19619	19781	26924	26924					0.0909621925461579
KTKEGVREVF	10	Unmodified	_KTKEGVREVF_					0	0	0		ENST00000473074.1_1_1:113244164-113245337:-|nuORF;ENSG00000155366|ENST00000339083|RHOC;ENSG00000143878|ENST00000272233|RHOB	ENST00000473074.1_1_1:113244164-113245337:-|nuORF	ENST00000473074.1_1_1:113244164-113245337:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	397.95947265625	3	398.227667	1191.66117	-0.40012	-0.00015934	1.4195	0.00056527	1.0193	0.00040593	398.5627340643439	20.176	1.064	20.786	20.146	21.21	0.61029					58	17	5	0	0	0	0.58344	2	6208	6179;6208		22.109	10.591	1	9911300			27469	5444	19620	19782	26925;26926	26926					0.073007749431099
KTKEIEQVY	9	Unmodified	_KTKEIEQVY_					0	0	0		nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1	nc|ENSG00000134283|Q8NEY8-3|PPHLN1	nc|ENSG00000134283|Q8NEY8-3|PPHLN1	MULTI-MSMS	A375_MHC_IP_R1	1	569.710693359375	2	569.311146	1136.60774	-0.52832	-0.00030078	-0.028911	-1.6459E-05	-0.55723	-0.00031724	569.3111285729879	24.117	0.70743	24.117	23.94	24.647	0					38	13	5	0	0	0	0.001761	1	6764	6764		171.46	78.298	1	318610000			27470	14609	19621	19783	26927	26927					0.04489977440630355
KTKEIEQVY	9	Unmodified	_KTKEIEQVY_					0	0	0		nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1	nc|ENSG00000134283|Q8NEY8-3|PPHLN1	nc|ENSG00000134283|Q8NEY8-3|PPHLN1	MULTI-MSMS	A375_MHC_IP_R1	1	380.2764587402344	3	379.876523	1136.60774	0.13259	5.0367E-05	-0.01387	-5.2688E-06	0.11872	4.5098E-05	379.87651830551295	24.117	0.91031	24.117	23.787	24.698	0					54	17	4	0	0	0	0.042871	2	6765	6765;6935		67.081	26.842	1	278070000			27471	14609	19621	19783	26928;26929	26928					0.04489977440630355
KTKEIEQVY	9	Unmodified	_KTKEIEQVY_					0	0	0		nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1	nc|ENSG00000134283|Q8NEY8-3|PPHLN1	nc|ENSG00000134283|Q8NEY8-3|PPHLN1	MULTI-MSMS	A375_MHC_IP_R2	2	380.27630615234375	3	379.876523	1136.60774	-0.2611	-9.9187E-05	0.013422	5.0985E-06	-0.24768	-9.4088E-05	379.87649894846606	23.424	0.6585	24.054	23.675	24.333	0.63014					37	12	5	0	0	0	0.063448	1	7513	7513		59.052	30.819	1	239450000			27472	14609	19621	19783	26930	26930					0.04489977440630355
KTKEIEQVY	9	Unmodified	_KTKEIEQVY_					0	0	0		nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1	nc|ENSG00000134283|Q8NEY8-3|PPHLN1	nc|ENSG00000134283|Q8NEY8-3|PPHLN1	MULTI-MSMS	A375_MHC_IP_R2	2	569.7106323242188	2	569.311146	1136.60774	-0.63218	-0.00035991	-0.12332	-7.0209E-05	-0.75551	-0.00043012	569.3110326144982	23.424	0.40439	24.054	23.878	24.283	0.63015					26	7	5	0	0	0	0.001761	1	7514	7514		171.46	91.868	1	217960000			27473	14609	19621	19783	26931	26931					0.04489977440630355
KTKEIEQVY	9	Unmodified	_KTKEIEQVY_					0	0	0		nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1	nc|ENSG00000134283|Q8NEY8-3|PPHLN1	nc|ENSG00000134283|Q8NEY8-3|PPHLN1	MULTI-MSMS	A375_MHC_IP_R2	2	380.2765808105469	3	379.876523	1136.60774	-0.20559	-7.81E-05	0.50932	0.00019348	0.30373	0.00011538	379.87665126273436	23.984	0.40845	24.614	24.283	24.691	0.63014					22	7	4	0	0	0	0.074562	1	7790	7790		55.235	25.394	1	28819000			27474	14609	19621	19783	26932	26932					0.04489977440630355
KTKEIEQVY	9	Unmodified	_KTKEIEQVY_					0	0	0		nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1	nc|ENSG00000134283|Q8NEY8-3|PPHLN1	nc|ENSG00000134283|Q8NEY8-3|PPHLN1	MULTI-SECPEP	A375_MHC_IP_R2	2	569.7106323242188	2	569.311146	1136.60774	-0.57788	-0.00032899	0.15145	8.6222E-05	-0.42643	-0.00024277	569.3111193541962	23.982	0.45912	24.612	24.283	24.742	0.63014					22	8	4	0	0	0	0.011004	1	7792	7792		132.38	71.022	1	24947000			27475	14609	19621	19783	26933	26933					0.04489977440630355
KTKEVLQEW	9	Unmodified	_KTKEVLQEW_					0	0	0		ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	MULTI-SECPEP	A375_MHC_IP_R1	1	387.9485168457031	3	387.548518	1159.62372	0.20138	7.8044E-05	0.14603	5.6595E-05	0.34741	0.00013464	387.5485004981517	34.677	0.45576	34.677	34.405	34.861	0					25	8	4	0	0	0	0.56537	1	11417	11417		12.175	0	1	26337000			27476	7658	19622	19784	26934	26934					0.050296836775032716
KTKEVLQEW	9	Unmodified	_KTKEVLQEW_					0	0	0		ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	MULTI-SECPEP	A375_MHC_IP_R1	1	581.2186889648438	2	580.819138	1159.62372	-0.2369	-0.00013759	0.40224	0.00023363	0.16534	9.6035E-05	580.8191731266965	34.673	0.50711	34.673	34.303	34.81	0					26	9	4	0	0	0	0.010806	1	11421	11421		159.1	0	1	17530000			27477	7658	19622	19784	26935	26935					0.050296836775032716
KTKEVLQEW	9	Unmodified	_KTKEVLQEW_					0	0	0		ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	MULTI-MSMS	A375_MHC_IP_R2	2	387.9485778808594	3	387.548518	1159.62372	-0.67128	-0.00026015	0.72857	0.00028236	0.057294	2.2204E-05	387.54876781862055	33.788	0.7079	34.54	34.196	34.904	0.75225					34	13	4	0	0	0	0.27064	1	12126	12126		24.882	0	1	21079000			27478	7658	19622	19784	26936	26936					0.050296836775032716
KTKEVLQEW	9	Unmodified	_KTKEVLQEW_					0	0	0		ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	MULTI-SECPEP	A375_MHC_IP_R2	2	581.1643676757812	2	580.819138	1159.62372	-0.84681	-0.00049184	0.66798	0.00038798	-0.17883	-0.00010387	580.8193298682284	33.778	0.50507	34.531	34.298	34.803	0.75225					24	9	3	0	0	0	0.010806	1	12152	12152		147.24	0	1	15017000			27479	7658	19622	19784	26937	26937					0.050296836775032716
KTKFFYYYFSY	11	Unmodified	_KTKFFYYYFSY_					0	0	0			REV__ENSG00000077147|ENST00000371142|TM9SF3	REV__ENSG00000077147|ENST00000371142|TM9SF3	MSMS	A375_MHC_IP_R2	2	519.6689453125	3	519.586861	1555.73875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.46	1	106.22	105.72	106.72	0.76136								0	0	0	0.16316	1	39888	39888		2.2527	1.7468	1		+		27480	16689	19623	19785	26938	26938					-0.016886319113382342
KTKFPAEQY	9	Unmodified	_KTKFPAEQY_					0	0	0		nc|ENSG00000211460|Q15631-2|TSN;ENST00000490104.5_1_2:122514991-122522940:+|nuORF;ENST00000467324.5_1_2:122513466-122522940:+|nuORF;ENSG00000211460|ENST00000389682|TSN	nc|ENSG00000211460|Q15631-2|TSN	nc|ENSG00000211460|Q15631-2|TSN	MULTI-SECPEP	A375_MHC_IP_R1	1	556.6923217773438	2	556.292756	1110.57096	-0.68788	-0.00038266	0.1534	8.5333E-05	-0.53448	-0.00029733	556.2928669630769	25.615	0.86254	25.615	25.154	26.017	0					31	16	3	0	0	0	0.10535	1	7517	7517		59.052	34.061	1	7737700			27481	9551	19624	19786	26939	26939					0.02009725614720992
KTKFPAEQY	9	Unmodified	_KTKFPAEQY_					0	0	0		nc|ENSG00000211460|Q15631-2|TSN;ENST00000490104.5_1_2:122514991-122522940:+|nuORF;ENST00000467324.5_1_2:122513466-122522940:+|nuORF;ENSG00000211460|ENST00000389682|TSN	nc|ENSG00000211460|Q15631-2|TSN	nc|ENSG00000211460|Q15631-2|TSN	MULTI-MSMS	A375_MHC_IP_R2	2	556.6924438476562	2	556.292756	1110.57096	-1.1971	-0.00066591	0.1764	9.8131E-05	-1.0207	-0.00056778	556.292828827938	25	0.66196	25.644	25.314	25.976	0.64368					27	12	3	0	0	0	0.009815	1	8309	8309		114.5	54.423	1	6663500			27482	9551	19624	19786	26940	26940					0.02009725614720992
KTKGSLLW	8	Unmodified	_KTKGSLLW_					0	0	0		ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	MULTI-SECPEP	A375_MHC_IP_R1	1	467.18170166015625	2	466.781828	931.549102	-0.1736	-8.1034E-05	-0.06548	-3.0565E-05	-0.23908	-0.0001116	466.7817227786103	43.453	0.6619	43.453	43.197	43.859	0					28	12	3	0	0	0	0.25645	1	15100	15100		72.968	36.924	1	6561200			27483	3141	19625	19787	26941	26941					0.08058965656789496
KTKGSLLW	8	Unmodified	_KTKGSLLW_					0	0	0		ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	MULTI-SECPEP	A375_MHC_IP_R2	2	467.1816101074219	2	466.781828	931.549102	-0.57713	-0.0002694	-0.070354	-3.284E-05	-0.64749	-0.00030224	466.7817941298967	42.406	0.61068	43.178	42.962	43.573	0.7724					22	11	3	0	0	0	0.25645	1	15758	15758		72.968	40.851	1	5751300			27484	3141	19625	19787	26942	26942					0.08058965656789496
KTKIDIIRM	9	Unmodified	_KTKIDIIRM_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;nc|ENSG00000123143|Q16512-2|PKN1	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-MSMS	A375_MHC_IP_R2	2	373.6300354003906	3	373.230243	1116.6689	0.036788	1.373E-05	-0.37101	-0.00013847	-0.33422	-0.00012474	373.23004161661606	38.356	0.50934	39.13	38.791	39.3	0.77451					19	9	3	0	0	0	0.66906	1	14139	14139		9.7643	1.6087	1	4417700			27485	3829	19626	19788	26943	26943					0.11523210939049022
KTKIDIIRM	9	Unmodified	_KTKIDIIRM_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;nc|ENSG00000123143|Q16512-2|PKN1	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-MATCH	A375_MHC_IP_R1	1		3	373.230243	1116.6689	0.34671	0.0001294	-0.097015	-3.6209E-05	0.24969	9.3193E-05	373.23012688384665	39.454	0.35424	39.454	39.187	39.541	0	0.16183	0.00019988	NaN	9.7643	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4005300			27486	3829	19626	19788							0.11523210939049022
KTKKKKKKKKH	11	Unmodified	_KTKKKKKKKKH_					0	0	0		NKAPL|p.A225T|1|0.31|ENSG00000189134|chr6:28260044-28260044|G/A|missense_variant	NKAPL|p.A225T|1|0.31|ENSG00000189134|chr6:28260044-28260044|G/A|missense_variant	NKAPL|p.A225T|1|0.31|ENSG00000189134|chr6:28260044-28260044|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	705.5389404296875	2	705.493188	1408.97182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.09	1	118.09	117.59	118.59	0								0	0	0	0.16353	1	43424	43424		0.35063	0.35063	1				27487	14997	19627	19789	26944	26944					0.28369514389623873
KTKKPLLI	8	Unmodified	_KTKKPLLI_					0	0	0		ENSG00000119820|ENST00000238831|YIPF4	ENSG00000119820|ENST00000238831|YIPF4	ENSG00000119820|ENST00000238831|YIPF4	MULTI-SECPEP	A375_MHC_IP_R2	2	471.23077392578125	2	470.83132	939.648088	-0.9199	-0.00043312	-0.17329	-8.1591E-05	-1.0932	-0.00051471	470.83122858044476	24.492	0.20299	25.136	25.009	25.212	0.64368					6	3	2	0	0	0	0.96184	1	8074	8074		18.146	11.423	1	4518000			27488	3626	19628	19790	26945	26945					0.17584988621706543
KTKKVVTAIEK	11	Unmodified	_KTKKVVTAIEK_					0	0	0			REV__ENST00000540992.1_1_12:16666501-16667302:+|nuORF	REV__ENST00000540992.1_1_12:16666501-16667302:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1245.1923828125	1	1244.79365	1243.78637	0.43528	0.00054183	-0.43288	-0.00053884	0.0024027	2.9908E-06	1244.7927054911393	149.53	1.9187	149.55	148.07	149.99	0.01825					187	67	4	0	0	0	0.73934	2	57902	57902;58086		0	0	1	939610	+		27489	25957	19629	19791	26946;26947	26946					0.17423067079471366
KTKLPVTL	8	Unmodified	_KTKLPVTL_					0	0	0		ENSG00000136152|ENST00000349995|COG3;ENST00000486940.2_1_13:46090326-46105393:+|nuORF	ENSG00000136152|ENST00000349995|COG3;ENST00000486940.2_1_13:46090326-46105393:+|nuORF	ENSG00000136152|ENST00000349995|COG3	MULTI-SECPEP	A375_MHC_IP_R1	1	450.69976806640625	2	450.299853	898.585153	0.093151	4.1946E-05	-0.25053	-0.00011281	-0.15738	-7.0868E-05	450.2996622152078	42.917	0.45761	42.917	42.739	43.197	0					20	8	3	0	0	0	0.85715	1	14897	14897		36.127	9.2434	1	9051400			27490	4758;12589	19630	19792	26948	26948					0.13180422833659122
KTKLPVTL	8	Unmodified	_KTKLPVTL_					0	0	0		ENSG00000136152|ENST00000349995|COG3;ENST00000486940.2_1_13:46090326-46105393:+|nuORF	ENSG00000136152|ENST00000349995|COG3;ENST00000486940.2_1_13:46090326-46105393:+|nuORF	ENSG00000136152|ENST00000349995|COG3	MULTI-SECPEP	A375_MHC_IP_R2	2	450.69964599609375	2	450.299853	898.585153	-0.25343	-0.00011412	-0.20993	-9.4532E-05	-0.46337	-0.00020865	450.2997386541209	41.959	0.35762	42.734	42.504	42.862	0.77451					17	6	3	0	0	0	0.83673	1	15580	15580		32.786	0.66872	1	6366700			27491	4758;12589	19630	19792	26949	26949					0.13180422833659122
KTKPLWHNY	9	Unmodified	_KTKPLWHNY_					0	0	0		nc|ENSG00000156958|Q01415-2|GALK2;ENSG00000156958|ENST00000560031|GALK2;ENST00000560119.5_1_15:49527865-49611209:+|nuORF	nc|ENSG00000156958|Q01415-2|GALK2	nc|ENSG00000156958|Q01415-2|GALK2	MULTI-SECPEP	A375_MHC_IP_R1	1	396.6164855957031	3	396.217102	1185.62948	-0.14092	-5.5837E-05	-1.8594	-0.00073673	-2.0003	-0.00079257	396.2163418839869	24.734	0.60514	24.734	24.397	25.002	0					13	8	2	0	0	0	0.33896	1	7116	7116		40.239	24.991	1	9100400			27492	6219	19631	19793	26950	26950					0.04408826979829428
KTKQLRQY	8	Unmodified	_KTKQLRQY_					0	0	0			REV__ENST00000508181.5_1_5:94842662-94852339:-|nuORF	REV__ENST00000508181.5_1_5:94842662-94852339:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	533.17138671875	2	532.81419	1063.61383	-0.52787	-0.00028126	-3.0665	-0.0016339	-3.5943	-0.0019151	533.3137699451003	43.988	0.25245	44.757	44.631	44.883	0.7691					6	4	2	0	0	0	0.97144	1	16401	16401		14.582	10.985	1	878010	+		27493	25578	19632	19794	26951	26951					0.08456540462793782
KTKQRLQNK	9	Unmodified	_KTKQRLQNK_					0	0	0		MYH4|p.E1428K|1|0.41|ENSG00000264424|chr17:10448947-10448947|C/T|missense_variant;MYH1|p.E1428K|1|0.69|ENSG00000109061|chr17:10497817-10497817|C/T|missense_variant	MYH4|p.E1428K|1|0.41|ENSG00000264424|chr17:10448947-10448947|C/T|missense_variant	MYH4|p.E1428K|1|0.41|ENSG00000264424|chr17:10448947-10448947|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	382.3033447265625	3	381.903406	1142.68839	0.64838	0.00024762	-0.12617	-4.8184E-05	0.52222	0.00019944	381.90323982166177	21.954	0.30506	21.954	21.757	22.062	0					11	5	3	0	0	0	0.69317	1	5870	5870		7.609	2.0857	1	1482200			27494	14429	19633	19795	26952	26952					0.12275303274191174
KTKQYRRRK	9	Unmodified	_KTKQYRRRK_					0	0	0			REV__CLPTM1|p.F205Y|1|0.36|ENSG00000104853|chr19:44985245-44985245|T/A|missense_variant	REV__CLPTM1|p.F205Y|1|0.36|ENSG00000104853|chr19:44985245-44985245|T/A|missense_variant	MSMS	A375_MHC_IP_R1	1	632.2872314453125	2	632.391462	1262.76837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.06	1	145.06	144.56	145.56	0								0	0	0	0.15486	1	55615	55615		0.6015	0	1		+		27495	15802	19634	19796	26953	26953					0.14749789668007907
KTLDMIKKI	9	Unmodified	_KTLDMIKKI_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000551983.1_1_12:104335630-104337190:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	A375_MHC_IP_R1	1	364.2948913574219	3	363.89486	1088.66275	0.038223	1.3909E-05	-0.14958	-5.443E-05	-0.11135	-4.0521E-05	363.8948229933378	37.941	0.35744	37.941	37.71	38.067	0					16	6	3	0	0	0	0.11638	1	12818	12818		38.559	13.677	1	6503500			27496	7095	19635	19797	26954	26954					0.12196692707539114
KTLDMIKKI	9	Unmodified	_KTLDMIKKI_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000551983.1_1_12:104335630-104337190:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	A375_MHC_IP_R2	2	364.2947692871094	3	363.89486	1088.66275	-0.6272	-0.00022823	0.16834	6.1258E-05	-0.45886	-0.00016698	363.89490930690005	36.826	0.50714	37.597	37.41	37.917	0.7709					20	9	3	0	0	0	0.042871	1	13460	13460		55.467	18.392	1	4319100			27497	7095	19635	19797	26955	26955					0.12196692707539114
KTLDQAIMKF	10	Unmodified	_KTLDQAIMKF_					0	0	0		ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50	ENSG00000113522|ENST00000378823|RAD50	ENSG00000113522|ENST00000378823|RAD50	MULTI-SECPEP	A375_MHC_IP_R1	1	399.2898864746094	3	398.889886	1193.64783	-0.24246	-9.6714E-05	-0.65362	-0.00026072	-0.89608	-0.00035744	398.8896713433211	61.284	0.51066	61.284	61.024	61.534	0					15	9	2	0	0	0	0.62001	1	22114	22114		23.964	0	1	2834600			27498	3158	19636	19798	26956	26956					0.058752008395231314
KTLDQAIMKF	10	Unmodified	_KTLDQAIMKF_					0	0	0		ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50	ENSG00000113522|ENST00000378823|RAD50	ENSG00000113522|ENST00000378823|RAD50	MULTI-SECPEP	A375_MHC_IP_R2	2	399.2893981933594	3	398.889886	1193.64783	-0.37379	-0.0001491	-0.51182	-0.00020416	-0.8856	-0.00035326	398.88965750420437	60.338	0.71373	61.083	60.853	61.566	0.74503					23	13	3	0	0	0	0.22519	1	22862	22862		51.765	38.246	1	4045500			27499	3158	19636	19798	26957	26957					0.058752008395231314
KTLDQAIMKF	10	Unmodified	_KTLDQAIMKF_					0	0	0		ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50	ENSG00000113522|ENST00000378823|RAD50	ENSG00000113522|ENST00000378823|RAD50	MULTI-SECPEP	A375_MHC_IP_R2	2	598.2305908203125	2	597.831191	1193.64783	-0.85565	-0.00051154	-2.8213	-0.0016867	-3.677	-0.0021982	597.8311389241038	60.308	0.61143	61.053	60.853	61.464	0.74503					25	11	4	0	0	0	0.2001	1	22837	22837		66.683	49.57	1	3117200			27500	3158	19636	19798	26958	26958					0.058752008395231314
KTLDQAIMKF	10	Oxidation (M)	_KTLDQAIM(Oxidation (M))KF_		KTLDQAIM(1)KF		KTLDQAIM(100)KF	0	0	1		ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50	ENSG00000113522|ENST00000378823|RAD50	ENSG00000113522|ENST00000378823|RAD50	MULTI-SECPEP	A375_MHC_IP_R1	1	606.2283935546875	2	605.828649	1209.64274	-0.10779	-6.5304E-05	-0.47122	-0.00028548	-0.57901	-0.00035078	605.8282577988253	44.344	0.71583	44.344	43.859	44.575	0					21	13	2	0	0	0	0.026848	1	15353	15353		102.55	62.309	1	5461800			27501	3158	19636	19799	26959	26959		149			0.04630896976891563
KTLDQAIMKF	10	Oxidation (M)	_KTLDQAIM(Oxidation (M))KF_		KTLDQAIM(1)KF		KTLDQAIM(120)KF	0	0	1		ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50	ENSG00000113522|ENST00000378823|RAD50	ENSG00000113522|ENST00000378823|RAD50	MULTI-SECPEP	A375_MHC_IP_R2	2	606.228515625	2	605.828649	1209.64274	-0.27694	-0.00016778	-0.55714	-0.00033753	-0.83408	-0.00050531	605.8282840276139	43.535	0.80922	44.307	43.674	44.483	0.7724					24	15	2	0	0	0	0.018335	1	16214	16214		118.21	72.51	1	4129400			27502	3158	19636	19799	26960	26960		149			0.04630896976891563
KTLDSQTRTF	10	Unmodified	_KTLDSQTRTF_					0	0	0		nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6	nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-4|BAG6	MULTI-MSMS	A375_MHC_IP_R1	1	599.216552734375	2	598.817127	1195.6197	-0.57897	-0.0003467	0.11537	6.9087E-05	-0.4636	-0.00027761	598.8171535341627	24.322	0.25454	24.322	24.143	24.397	0					7	4	2	0	0	0	0.36923	1	6893	6893		35.996	16.37	1	6083500			27503	9446	19637	19800	26961	26961					0.02971594183804882
KTLDSQTRTF	10	Unmodified	_KTLDSQTRTF_					0	0	0		nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6	nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-4|BAG6	MULTI-SECPEP	A375_MHC_IP_R1	1	399.9470520019531	3	399.547177	1195.6197	-0.41993	-0.00016778	0.21803	8.7114E-05	-0.2019	-8.0669E-05	399.5472655807272	24.322	0.25454	24.322	24.143	24.397	0					7	4	2	0	0	0	0.29764	1	6885	6885		64.692	33.23	1	8385900			27504	9446	19637	19800	26962	26962					0.02971594183804882
KTLDSQTRTF	10	Unmodified	_KTLDSQTRTF_					0	0	0		nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6	nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-4|BAG6	MULTI-SECPEP	A375_MHC_IP_R2	2	399.9471435546875	3	399.547177	1195.6197	-0.33682	-0.00013457	0.22148	8.8491E-05	-0.11534	-4.6083E-05	399.54727889213143	23.601	0.30498	24.231	24.079	24.384	0.63014					9	5	2	0	0	0	0.07526	1	7644	7644		88.576	47.861	1	6507900			27505	9446	19637	19800	26963	26963					0.02971594183804882
KTLDSQTRTF	10	Unmodified	_KTLDSQTRTF_					0	0	0		nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6	nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-4|BAG6	MULTI-SECPEP	A375_MHC_IP_R2	2	599.4093627929688	2	598.817127	1195.6197	-0.81648	-0.00048892	0.69784	0.00041788	-0.11864	-7.1045E-05	598.8171132414955	23.608	0.20382	24.238	24.129	24.333	0.63014					6	3	2	0	0	0	0.43687	1	7623	7623		59.177	22.102	1	4606700			27506	9446	19637	19800	26964	26964					0.02971594183804882
KTLDSSFKRY	10	Unmodified	_KTLDSSFKRY_					0	0	0		ENST00000521847.5_1_17:78391611-78391674:+|nuORF	ENST00000521847.5_1_17:78391611-78391674:+|nuORF	ENST00000521847.5_1_17:78391611-78391674:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	415.95928955078125	3	415.559305	1243.65609	-0.35413	-0.00014716	0.42375	0.00017609	0.069619	2.8931E-05	415.55943679869597	21.694	0.40902	22.314	22.03	22.439	0.61932					16	7	3	0	0	0	0.38946	1	6849	6849		34.79	15.647	1	2498700			27507	13016	19638	19801	26965	26965					0.04400471080521129
KTLDSSFKRY	10	Unmodified	_KTLDSSFKRY_					0	0	0		ENST00000521847.5_1_17:78391611-78391674:+|nuORF	ENST00000521847.5_1_17:78391611-78391674:+|nuORF	ENST00000521847.5_1_17:78391611-78391674:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	415.9590148925781	3	415.559305	1243.65609	-0.36474	-0.00015157	-0.34069	-0.00014158	-0.70544	-0.00029315	415.55937500631956	22.797	0.66413	23.427	22.959	23.623	0.63014					20	12	3	0	0	0	0.91917	1	7306	7306		17.572	10.535	1	2201400			27508	13016	19638	19801	26966	26966					0.04400471080521129
KTLEGEFSV	9	Unmodified	_KTLEGEFSV_					0	0	0		YY1|p.E278Nfs*5|1|0.48|ENSG00000100811|chr14:100262455-100262455|A/-|frameshift_variant;YY1|p.E289Kfs*8|1|0.33|ENSG00000100811|chr14:100274715-100274715|T/-|frameshift_variant;ENSG00000230797|ENST00000429584|YY2;ENSG00000100811|ENST00000262238|YY1	YY1|p.E278Nfs*5|1|0.48|ENSG00000100811|chr14:100262455-100262455|A/-|frameshift_variant	YY1|p.E278Nfs*5|1|0.48|ENSG00000100811|chr14:100262455-100262455|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	505.662841796875	2	505.263665	1008.51278	-0.85836	-0.0004337	0.34099	0.00017229	-0.51737	-0.00026141	505.26381251357753	55.911	0.86669	56.661	56.337	57.203	0.75014					50	16	4	0	0	0	0.16595	1	21056	21056		38.615	2.4877	1	53372000			27509	2222	19639	19802	26967	26967					0.008860439694444722
KTLEGIAAV	9	Unmodified	_KTLEGIAAV_					0	0	0		DUS1L|p.V295M|1|0.25|ENSG00000169718|chr17:82060921-82060921|C/T|missense_variant;ENST00000578846.5_1_17:80018575-80018836:-|nuORF;ENST00000580731.1_1_17:80016678-80019221:-|nuORF;ENSG00000169718|ENST00000306796|DUS1L	DUS1L|p.V295M|1|0.25|ENSG00000169718|chr17:82060921-82060921|C/T|missense_variant	DUS1L|p.V295M|1|0.25|ENSG00000169718|chr17:82060921-82060921|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	451.67132568359375	2	451.271293	900.528032	0.22116	9.9803E-05	-0.02127	-9.5985E-06	0.19989	9.0205E-05	451.271243055809	49.479	0.65958	49.479	49.134	49.793	0					21	12	2	0	0	0	0.037683	1	17499	17499		69.105	7.7474	1	6094300			27510	809	19640	19803	26968	26968					0.07378955557283007
KTLEGIAAV	9	Unmodified	_KTLEGIAAV_					0	0	0		DUS1L|p.V295M|1|0.25|ENSG00000169718|chr17:82060921-82060921|C/T|missense_variant;ENST00000578846.5_1_17:80018575-80018836:-|nuORF;ENST00000580731.1_1_17:80016678-80019221:-|nuORF;ENSG00000169718|ENST00000306796|DUS1L	DUS1L|p.V295M|1|0.25|ENSG00000169718|chr17:82060921-82060921|C/T|missense_variant	DUS1L|p.V295M|1|0.25|ENSG00000169718|chr17:82060921-82060921|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	451.271293	900.528032	-0.29185	-0.0001317	-0.062066	-2.8009E-05	-0.35391	-0.00015971	451.27121968130865	48.533	0.60832	49.29	48.98	49.588	0.75737	-0.094374	-1.9914E-05	NaN	69.105	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5982400			27511	809	19640	19803							0.07378955557283007
KTLELPHVF	9	Unmodified	_KTLELPHVF_					0	0	0		ENSG00000164815|ENST00000297431|ORC5;ENST00000485726.1_1_7:103828364-103848439:-|nuORF;nc|ENSG00000164815|O43913-2|ORC5	ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	MULTI-MSMS	A375_MHC_IP_R1	1	362.2778625488281	3	361.878087	1082.61243	0.16718	6.0498E-05	-0.42672	-0.00015442	-0.25955	-9.3924E-05	361.87782948959136	75.293	0.60543	75.293	74.958	75.564	0					26	11	3	0	0	0	0.17328	1	27419	27419		36.506	25.707	1	3899100			27512	6882	19641	19804	26969	26969					0.07442906374035374
KTLELPHVF	9	Unmodified	_KTLELPHVF_					0	0	0		ENSG00000164815|ENST00000297431|ORC5;ENST00000485726.1_1_7:103828364-103848439:-|nuORF;nc|ENSG00000164815|O43913-2|ORC5	ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	MULTI-SECPEP	A375_MHC_IP_R1	1	542.71337890625	2	542.313492	1082.61243	-0.59443	-0.00032237	-1.0002	-0.0005424	-1.5946	-0.00086477	542.3134270101586	75.327	1.0609	75.327	74.553	75.614	0					55	20	4	0	0	0	0.056023	1	27382	27382		66.457	42.436	1	11012000			27513	6882	19641	19804	26970	26970					0.07442906374035374
KTLELPHVF	9	Unmodified	_KTLELPHVF_					0	0	0		ENSG00000164815|ENST00000297431|ORC5;ENST00000485726.1_1_7:103828364-103848439:-|nuORF;nc|ENSG00000164815|O43913-2|ORC5	ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	MULTI-MSMS	A375_MHC_IP_R2	2	362.61248779296875	3	361.878087	1082.61243	-0.19362	-7.0066E-05	-0.10043	-3.6343E-05	-0.29405	-0.00010641	361.8779850878663	74.303	0.65907	75.04	74.706	75.365	0.73752					26	12	3	0	0	0	0.22528	1	28199	28199		33.445	18.196	1	5135000			27514	6882	19641	19804	26971	26971					0.07442906374035374
KTLELPHVF	9	Unmodified	_KTLELPHVF_					0	0	0		ENSG00000164815|ENST00000297431|ORC5;ENST00000485726.1_1_7:103828364-103848439:-|nuORF;nc|ENSG00000164815|O43913-2|ORC5	ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	MULTI-SECPEP	A375_MHC_IP_R2	2	542.713134765625	2	542.313492	1082.61243	-0.85422	-0.00046326	-0.39358	-0.00021344	-1.2478	-0.0006767	542.3135149093421	74.353	0.81158	75.091	74.604	75.416	0.73751					39	15	3	0	0	0	0.0042279	1	28185	28185		176.84	128.49	1	11259000			27515	6882	19641	19804	26972	26972					0.07442906374035374
KTLERSYLL	9	Unmodified	_KTLERSYLL_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	A375_MHC_IP_R1	1	562.2294311523438	2	561.829506	1121.64446	-0.3242	-0.00018215	-0.069623	-3.9116E-05	-0.39383	-0.00022126	561.8294658862562	43.374	0.86421	43.374	43.095	43.959	0					31	16	4	0	0	0	0.014148	1	15042	15042		107.56	52.061	1	16783000			27516	7178	19642	19805	26973	26973					0.08850274057181196
KTLERSYLL	9	Unmodified	_KTLERSYLL_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	A375_MHC_IP_R1	1	375.2889404296875	3	374.888763	1121.64446	0.47682	0.00017875	-0.38684	-0.00014502	0.089972	3.373E-05	374.8885882185389	43.368	0.56009	43.368	43.043	43.603	0					31	10	5	0	0	0	0.13728	1	15047	15047		43.982	1.6694	1	19712000			27517	7178	19642	19805	26974	26974					0.08850274057181196
KTLERSYLL	9	Unmodified	_KTLERSYLL_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-SECPEP	A375_MHC_IP_R2	2	562.2291870117188	2	561.829506	1121.64446	-0.52013	-0.00029223	0.072181	4.0554E-05	-0.44795	-0.00025167	561.8294496644805	42.369	0.45906	43.141	42.91	43.369	0.7724					26	8	4	0	0	0	0.091861	1	15746	15746		70.929	25.229	1	13773000			27518	7178	19642	19805	26975	26975					0.08850274057181196
KTLFILRGL	9	Unmodified	_KTLFILRGL_					0	0	0		nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP	nc|ENSG00000173786|P09543-2|CNP	nc|ENSG00000173786|P09543-2|CNP	MULTI-MSMS	A375_MHC_IP_R1	1	354.6338806152344	3	354.234093	1059.68045	-0.17506	-6.2012E-05	-0.15421	-5.4628E-05	-0.32927	-0.00011664	354.23395883063347	83.931	0.45561	83.931	83.736	84.191	0					19	8	3	0	0	0	0.50892	1	30735	30735		14.218	2.0434	1	2420200			27519	7829	19643	19806	26976	26976					0.15299776024698986
KTLFILRGL	9	Unmodified	_KTLFILRGL_					0	0	0		nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP	nc|ENSG00000173786|P09543-2|CNP	nc|ENSG00000173786|P09543-2|CNP	MULTI-SECPEP	A375_MHC_IP_R1	1	531.2470703125	2	530.847502	1059.68045	-0.71867	-0.0003815	0.10804	5.7355E-05	-0.61062	-0.00032415	530.8474429101378	83.96	0.55639	83.96	83.685	84.241	0					29	10	4	0	0	0	0.16595	1	30720	30720		53.404	9.6316	1	8759400			27520	7829	19643	19806	26977	26977					0.15299776024698986
KTLFILRGL	9	Unmodified	_KTLFILRGL_					0	0	0		nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP	nc|ENSG00000173786|P09543-2|CNP	nc|ENSG00000173786|P09543-2|CNP	MULTI-SECPEP	A375_MHC_IP_R2	2	531.2468872070312	2	530.847502	1059.68045	-0.63671	-0.00033799	-0.18133	-9.6256E-05	-0.81803	-0.00043425	530.8473253913334	82.788	0.75601	83.531	83.195	83.951	0.74293					34	14	4	0	0	0	0.36673	1	31455	31455		45.74	5.5007	1	8224800			27521	7829	19643	19806	26978	26978					0.15299776024698986
KTLFLNTEY	9	Unmodified	_KTLFLNTEY_					0	0	0		ENST00000487174.1_1_1:32683125-32687629:-|nuORF;nc|ENSG00000160055|Q8WY98-4|TMEM234;ENSG00000160055|ENST00000309777|TMEM234;nc|ENSG00000160055|Q8WY98|TMEM234;nc|ENSG00000160055|Q8WY98-2|TMEM234	ENST00000487174.1_1_1:32683125-32687629:-|nuORF	ENST00000487174.1_1_1:32683125-32687629:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	565.2001342773438	2	564.800414	1127.58628	-0.22155	-0.00012513	-0.23619	-0.0001334	-0.45774	-0.00025853	564.8001211466636	71.541	0.35183	71.541	71.313	71.665	0					16	6	3	0	0	0	0.025037	1	25984	25984		90.135	15.206	1	12127000			27522	6393	19644	19807	26979	26979					0.02758592411896643
KTLFPTHH	8	Unmodified	_KTLFPTHH_					0	0	0		ENST00000335312.7_1_19:3631933-3632425:-|nuORF	ENST00000335312.7_1_19:3631933-3632425:-|nuORF	ENST00000335312.7_1_19:3631933-3632425:-|nuORF	MSMS	A375_MHC_IP_R2	2	490.73626708984375	2	490.769252	979.52395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.72	1	109.47	108.97	109.97	0.74684								0	0	0	0.16876	1	41047	41047		7.9102	0	1				27523	10808	19645	19808	26980	26980					0.03336910854238795
KTLGGYSW	8	Unmodified	_KTLGGYSW_					0	0	0		ENST00000589448.5_1_19:19230741-19243387:-|nuORF;ENSG00000064545|ENST00000162044|TMEM161A;ENST00000591443.1_1_19:19230741-19231736:-|nuORF;ENST00000587406.5_1_19:19230741-19232328:-|nuORF;nc|ENSG00000064545|Q9NX61-2|TMEM161A	ENST00000589448.5_1_19:19230741-19243387:-|nuORF	ENST00000589448.5_1_19:19230741-19243387:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	456.63458251953125	2	456.23471	910.454868	-0.75217	-0.00034316	0.37642	0.00017174	-0.37575	-0.00017143	456.2348422786605	52.816	1.0164	53.568	53.233	54.249	0.75105					35	19	3	0	0	0	0.57987	1	19876	19876		45.7	1.8413	1	19267000			27524	1352	19646	19809	26981	26981					-0.003941731653412717
KTLGKKLRY	9	Unmodified	_KTLGKKLRY_					0	0	0		ENST00000505799.1_1_5:37379427-37381852:+|nuORF	ENST00000505799.1_1_5:37379427-37381852:+|nuORF	ENST00000505799.1_1_5:37379427-37381852:+|nuORF	MSMS	A375_MHC_IP_R2	2	369.59490966796875	3	369.572998	1105.69716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.659	1	27.319	26.819	27.819	0.65992								0	0	0	0.15486	1	9033	9033		4.5289	2.4429	1				27525	12845	19647	19810	26982	26982					0.14854276910659792
KTLGKLWRL	9	Unmodified	_KTLGKLWRL_					0	0	0		nc|ENSG00000100146|P56693|SOX10;chr22:37984441-37987345|453|15.29|0.34|5.48|-|ENST00000360880|SOX10,SOX10;nc|ENSG00000100146|P56693-2|SOX10;ENSG00000125398|ENST00000245479|SOX9;ENSG00000005513|ENST00000293894|SOX8	nc|ENSG00000100146|P56693|SOX10;ENSG00000005513|ENST00000293894|SOX8	nc|ENSG00000100146|P56693|SOX10	MULTI-MSMS	A375_MHC_IP_R1	1	372.6413879394531	3	372.241359	1113.70225	0.7164	0.00026667	-0.31661	-0.00011786	0.39979	0.00014882	372.2412130156232	48.401	1.214	48.401	48.071	49.285	0					68	23	5	0	0	0	0.063448	3	17031	17031;17224;17277		59.052	19.839	1	97134000			27526	471;897	19648	19811	26983;26984;26985	26983					0.14994580773259258
KTLGKLWRL	9	Unmodified	_KTLGKLWRL_					0	0	0		nc|ENSG00000100146|P56693|SOX10;chr22:37984441-37987345|453|15.29|0.34|5.48|-|ENST00000360880|SOX10,SOX10;nc|ENSG00000100146|P56693-2|SOX10;ENSG00000125398|ENST00000245479|SOX9;ENSG00000005513|ENST00000293894|SOX8	nc|ENSG00000100146|P56693|SOX10;ENSG00000005513|ENST00000293894|SOX8	nc|ENSG00000100146|P56693|SOX10	MULTI-MSMS	A375_MHC_IP_R1	1	558.2578735351562	2	557.858401	1113.70225	-0.14311	-7.9838E-05	-0.17091	-9.5345E-05	-0.31403	-0.00017518	557.8582318488636	48.444	0.65798	48.444	48.173	48.831	0					28	12	3	0	0	0	0.030222	1	17081	17081		80.676	26.843	1	6061500			27527	471;897	19648	19811	26986	26986					0.14994580773259258
KTLGKLWRL	9	Unmodified	_KTLGKLWRL_					0	0	0		nc|ENSG00000100146|P56693|SOX10;chr22:37984441-37987345|453|15.29|0.34|5.48|-|ENST00000360880|SOX10,SOX10;nc|ENSG00000100146|P56693-2|SOX10;ENSG00000125398|ENST00000245479|SOX9;ENSG00000005513|ENST00000293894|SOX8	nc|ENSG00000100146|P56693|SOX10;ENSG00000005513|ENST00000293894|SOX8	nc|ENSG00000100146|P56693|SOX10	MULTI-MSMS	A375_MHC_IP_R2	2	372.5954284667969	3	372.241359	1113.70225	0.63167	0.00023513	-0.31537	-0.00011739	0.3163	0.00011774	372.2412279752592	47.236	1.1674	47.997	47.715	48.883	0.76128					67	22	5	0	0	0	0.063448	2	17669	17669;17688		59.052	19.839	1	172730000			27528	471;897	19648	19811	26987;26988	26987					0.14994580773259258
KTLGKLWRL	9	Unmodified	_KTLGKLWRL_					0	0	0		nc|ENSG00000100146|P56693|SOX10;chr22:37984441-37987345|453|15.29|0.34|5.48|-|ENST00000360880|SOX10,SOX10;nc|ENSG00000100146|P56693-2|SOX10;ENSG00000125398|ENST00000245479|SOX9;ENSG00000005513|ENST00000293894|SOX8	nc|ENSG00000100146|P56693|SOX10;ENSG00000005513|ENST00000293894|SOX8	nc|ENSG00000100146|P56693|SOX10	MULTI-SECPEP	A375_MHC_IP_R2	2	558.2578125	2	557.858401	1113.70225	-0.55609	-0.00031022	0.1204	6.7165E-05	-0.43569	-0.00024305	557.8584301647599	47.266	0.40776	48.027	47.817	48.225	0.76128					20	7	4	0	0	0	0.67121	1	17714	17714		26.021	17.865	1	8853700			27529	471;897	19648	19811	26989	26989					0.14994580773259258
KTLGPAPI	8	Unmodified	_KTLGPAPI_					0	0	0			REV__ENSG00000070748|ENST00000337653|CHAT	REV__ENSG00000070748|ENST00000337653|CHAT	MULTI-SECPEP	A375_MHC_IP_R2	2	398.31158447265625	2	398.749996	795.485439	0.001616	6.4437E-07	-0.67736	-0.0002701	-0.67574	-0.00026945	398.7499543413352	42.841	0.35429	43.613	43.421	43.775	0.7724					10	6	2	0	0	0	0.97144	1	15953	15953		5.2307	2.9279	1	666320	+		27530	16579	19649	19812	26990	26990					0.07951605219693647
KTLHETVNF	9	Unmodified	_KTLHETVNF_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-SECPEP	A375_MHC_IP_R1	1	363.9292907714844	3	363.529346	1087.56621	0.20806	7.5638E-05	-0.32452	-0.00011797	-0.11646	-4.2336E-05	363.5292063552894	31.844	0.61316	31.844	31.514	32.127	0					27	11	3	0	0	0	0.5212	1	10194	10194		19.626	12.996	1	10209000			27531	3732	19650	19813	26991	26991					0.025928414719373905
KTLHETVNF	9	Unmodified	_KTLHETVNF_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-SECPEP	A375_MHC_IP_R1	1	545.1901245117188	2	544.790381	1087.56621	-0.54058	-0.0002945	-0.069677	-3.7959E-05	-0.61026	-0.00033246	544.7902564831984	31.842	0.51056	31.842	31.565	32.075	0					16	9	2	0	0	0	0.22619	1	10220	10220		59.052	20.877	1	5545300			27532	3732	19650	19813	26992	26992					0.025928414719373905
KTLHETVNF	9	Unmodified	_KTLHETVNF_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-SECPEP	A375_MHC_IP_R2	2	363.92919921875	3	363.529346	1087.56621	-0.09996	-3.6338E-05	-0.28059	-0.000102	-0.38055	-0.00013834	363.529197018182	30.97	0.60997	31.689	31.467	32.077	0.71857					26	11	3	0	0	0	0.5212	1	10930	10930		19.626	5.2206	1	12203000			27533	3732	19650	19813	26993	26993					0.025928414719373905
KTLHETVNF	9	Unmodified	_KTLHETVNF_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-SECPEP	A375_MHC_IP_R2	2	545.1900024414062	2	544.790381	1087.56621	-0.84057	-0.00045793	0.0014777	8.0502E-07	-0.83909	-0.00045713	544.7902846505181	30.991	0.45774	31.709	31.517	31.974	0.71857					17	8	3	0	0	0	0.04566	1	10941	10941		79.427	37.587	1	5538400			27534	3732	19650	19813	26994	26994					0.025928414719373905
KTLHLGTLF	9	Unmodified	_KTLHLGTLF_					0	0	0		ENST00000481146.6_1_9:115449783-115456484:-|nuORF	ENST00000481146.6_1_9:115449783-115456484:-|nuORF	ENST00000481146.6_1_9:115449783-115456484:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	515.2568969726562	2	515.30821	1028.60187	-0.68399	-0.00035247	0.3082	0.00015882	-0.37579	-0.00019365	515.3080740838354	69.728	0.71162	70.462	70.132	70.844	0.73421					23	13	2	0	0	0	0.062639	1	26418	26418		59.368	7.7386	1	4765800			27535	12509	19651	19814	26995	26995					0.08870923719609891
KTLIEKERF	9	Unmodified	_KTLIEKERF_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-SECPEP	A375_MHC_IP_R1	1	388.9642639160156	3	388.564279	1162.67101	0.08252	3.2064E-05	-0.048673	-1.8912E-05	0.033847	1.3152E-05	388.56424403147497	25.588	0.60928	25.588	25.357	25.966	0					38	11	4	0	0	0	0.013536	1	7468	7468		68.484	0	1	68432000			27536	6535	19652	19815	26996	26996					0.0961796294850501
KTLIEKERF	9	Unmodified	_KTLIEKERF_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-SECPEP	A375_MHC_IP_R1	1	582.7554931640625	2	582.342781	1162.67101	-0.32458	-0.00018902	-0.39991	-0.00023288	-0.72449	-0.0004219	582.8442569402957	25.562	0.30556	25.562	25.46	25.765	0					6	5	2	0	0	0	0.59927	1	7514	7514		23.801	7.2352	1	2321700			27537	6535	19652	19815	26997	26997					0.0961796294850501
KTLIEPFTL	9	Unmodified	_KTLIEPFTL_					0	0	0		ENSG00000197885|ENST00000425478|NKIRAS1	ENSG00000197885|ENST00000425478|NKIRAS1	ENSG00000197885|ENST00000425478|NKIRAS1	MULTI-SECPEP	A375_MHC_IP_R1	1	531.7159423828125	2	531.3157	1060.61685	-0.57953	-0.00030792	0.19864	0.00010554	-0.38089	-0.00020237	531.3157196238534	100.42	0.96159	100.42	100.03	100.99	0					47	18	4	0	0	0	0.010955	1	36871	36871		145.13	55.729	1	28594000			27538	9205	19653	19816	26998	26998					0.0889637079694694
KTLIEPFTL	9	Unmodified	_KTLIEPFTL_					0	0	0		ENSG00000197885|ENST00000425478|NKIRAS1	ENSG00000197885|ENST00000425478|NKIRAS1	ENSG00000197885|ENST00000425478|NKIRAS1	MULTI-SECPEP	A375_MHC_IP_R2	2	531.7151489257812	2	531.3157	1060.61685	-0.4246	-0.00022559	-0.28311	-0.00015042	-0.70771	-0.00037602	531.3154442605592	99.483	1.0691	100.25	99.912	100.98	0.76278					53	20	4	0	0	0	0.011191	1	37685	37685		121.53	32.133	1	28678000			27539	9205	19653	19816	26999	26999					0.0889637079694694
KTLILPRL	8	Unmodified	_KTLILPRL_					0	0	0		nc|ENSG00000106290|P49848-4|TAF6;nc|ENSG00000106290|P49848-2|TAF6;ENSG00000106290|ENST00000453269|TAF6;nc|ENSG00000106290|P49848-3|TAF6	nc|ENSG00000106290|P49848-4|TAF6	nc|ENSG00000106290|P49848-4|TAF6	MULTI-SECPEP	A375_MHC_IP_R1	1	477.72845458984375	2	477.328945	952.643337	-0.42628	-0.00020347	0.12278	5.8608E-05	-0.30349	-0.00014487	477.32890758827597	62.154	0.40855	62.154	61.943	62.351	0					12	7	2	0	0	0	0.9187	1	22481	22481		13.906	7.1829	1	1387200			27540	2680	19654	19817	27000	27000					0.16512104478943002
KTLILPRL	8	Unmodified	_KTLILPRL_					0	0	0		nc|ENSG00000106290|P49848-4|TAF6;nc|ENSG00000106290|P49848-2|TAF6;ENSG00000106290|ENST00000453269|TAF6;nc|ENSG00000106290|P49848-3|TAF6	nc|ENSG00000106290|P49848-4|TAF6	nc|ENSG00000106290|P49848-4|TAF6	MULTI-MATCH	A375_MHC_IP_R2	2		2	477.328945	952.643337	-0.84343	-0.00040259	-0.065058	-3.1054E-05	-0.90849	-0.00043365	477.3288673152581	61.009	0.35279	61.754	61.566	61.919	0.74503	-0.19999	-8.29E-05	NaN	13.906	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1516100			27541	2680	19654	19817							0.16512104478943002
KTLKEIRTL	9	Unmodified	_KTLKEIRTL_					0	0	0		nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1	nc|ENSG00000116127|Q8TCU4-3|ALMS1	nc|ENSG00000116127|Q8TCU4-3|ALMS1	MULTI-MSMS	A375_MHC_IP_R1	1	368.3045959472656	3	367.904524	1100.69174	0.27171	9.9965E-05	-0.035631	-1.3109E-05	0.23608	8.6856E-05	367.90452546409045	24.977	0.45423	24.977	24.903	25.357	0					12	8	2	0	0	0	0.59859	1	7243	7243		14.957	1.3423	1	7757100			27542	3371	19655	19818	27001	27001					0.14542553328192298
KTLKEIRTL	9	Unmodified	_KTLKEIRTL_					0	0	0		nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1	nc|ENSG00000116127|Q8TCU4-3|ALMS1	nc|ENSG00000116127|Q8TCU4-3|ALMS1	MULTI-MSMS	A375_MHC_IP_R2	2	368.3044738769531	3	367.904524	1100.69174	-0.10609	-3.9031E-05	0.86877	0.00031963	0.76268	0.00028059	367.90495790269097	24.305	0.25383	24.949	24.806	25.06	0.64368					10	4	3	0	0	0	0.25658	1	7986	7986		33.821	9.8572	1	4258400			27543	3371	19655	19818	27002	27002					0.14542553328192298
KTLLEKSQF	9	Unmodified	_KTLLEKSQF_					0	0	0		ENSG00000177830|ENST00000323578|CHID1;ENST00000526714.5_1_11:870485-904855:-|nuORF;nc|ENSG00000177830|Q9BWS9-3|CHID1	ENSG00000177830|ENST00000323578|CHID1	ENSG00000177830|ENST00000323578|CHID1	MULTI-SECPEP	A375_MHC_IP_R1	1	547.7160034179688	2	547.316232	1092.61791	-0.59271	-0.0003244	-0.326	-0.00017842	-0.9187	-0.00050282	547.3161158806943	34.527	0.35449	34.527	34.303	34.657	0					13	6	3	0	0	0	0.69179	1	11419	11419		12.175	1.2758	1	2957900			27544	8110	19656	19819	27003	27003					0.0753058516584133
KTLLKTKLSEK	11	Unmodified	_KTLLKTKLSEK_					0	0	0		nc|ENSG00000103310|Q05996-2|ZP2;ENSG00000103310|ENST00000574091|ZP2	nc|ENSG00000103310|Q05996-2|ZP2	nc|ENSG00000103310|Q05996-2|ZP2	MULTI-MSMS	A375_MHC_IP_R2	2	645.467529296875	2	644.91357	1287.81259	-0.49968	-0.00032225	-0.086371	-5.5702E-05	-0.58605	-0.00037795	644.9133229683702	149.29	2.3268	149.31	147.69	150.01	0.01825					302	92	4	0	0	0	0.73934	1	57623	57623		0	0	1	2502100			27545	2441	19657	19820	27004	27004					0.1801933625094989
KTLLKTKLSEK	11	Unmodified	_KTLLKTKLSEK_					0	0	0		nc|ENSG00000103310|Q05996-2|ZP2;ENSG00000103310|ENST00000574091|ZP2	nc|ENSG00000103310|Q05996-2|ZP2	nc|ENSG00000103310|Q05996-2|ZP2	MULTI-MSMS	A375_MHC_IP_R2	2	1289.2200927734375	1	1288.81986	1287.81259	0.46397	0.00059798	-0.42375	-0.00054613	0.040225	5.1843E-05	1288.8189193850124	149.39	1.952	149.4	147.98	149.93	0.018265					182	64	4	0	0	0	0.73934	2	57738	57738;57952		0	0	1	901710			27546	2441	19657	19820	27005;27006	27005					0.1801933625094989
KTLLLLAV	8	Unmodified	_KTLLLLAV_					0	0	0		ENSG00000188257|ENST00000482011|PLA2G2A	ENSG00000188257|ENST00000482011|PLA2G2A	ENSG00000188257|ENST00000482011|PLA2G2A	MULTI-SECPEP	A375_MHC_IP_R1	1	436.20465087890625	2	435.804771	869.59499	-0.10684	-4.6562E-05	-0.26892	-0.0001172	-0.37576	-0.00016376	435.8046418727584	102.28	0.65688	102.28	101.95	102.61	0					18	12	2	0	0	0	0.6033	1	37557	37557		47.749	0	1	3965700			27547	8894	19658	19821	27007	27007					0.15497610839031495
KTLLLLAV	8	Unmodified	_KTLLLLAV_					0	0	0		ENSG00000188257|ENST00000482011|PLA2G2A	ENSG00000188257|ENST00000482011|PLA2G2A	ENSG00000188257|ENST00000482011|PLA2G2A	MULTI-SECPEP	A375_MHC_IP_R2	2	436.20501708984375	2	435.804771	869.59499	-0.15234	-6.6389E-05	0.47665	0.00020773	0.32431	0.00014134	435.8048919153232	101.14	0.51283	101.91	101.6	102.11	0.76428					19	9	3	0	0	0	0.72637	1	38300	38300		32.786	0	1	2578000			27548	8894	19658	19821	27008	27008					0.15497610839031495
KTLLLTSLF	9	Unmodified	_KTLLLTSLF_					0	0	0		ENSG00000198888|ENST00000361390|MT-ND1	ENSG00000198888|ENST00000361390|MT-ND1	ENSG00000198888|ENST00000361390|MT-ND1	MULTI-MSMS	A375_MHC_IP_R1	1	518.7259521484375	2	518.326068	1034.63758	-0.86503	-0.00044837	0.2823	0.00014632	-0.58273	-0.00030205	518.326102539388	121.3	0.35593	121.3	121.11	121.47	0					10	6	2	0	0	0	0.10637	1	45065	45065		49.527	20.446	1	12020000			27549	9361	19659	19822	27009	27009					0.12164961176608813
KTLNVNKII	9	Unmodified	_KTLNVNKII_					0	0	0		nc|ENSG00000135318|P21589-2|NT5E;ENSG00000135318|ENST00000257770|NT5E	nc|ENSG00000135318|P21589-2|NT5E	nc|ENSG00000135318|P21589-2|NT5E	MULTI-SECPEP	A375_MHC_IP_R1	1	522.2341918945312	2	521.834591	1041.65463	-0.30429	-0.00015879	-0.98934	-0.00051627	-1.2936	-0.00067506	521.8339618028141	42.764	0.65916	42.764	42.487	43.146	0					22	12	3	0	0	0	0.028087	1	14817	14817		86.332	24.73	1	10404000			27550	4668	19660	19823	27010	27010					0.13546881782417586
KTLNVNKII	9	Unmodified	_KTLNVNKII_					0	0	0		nc|ENSG00000135318|P21589-2|NT5E;ENSG00000135318|ENST00000257770|NT5E	nc|ENSG00000135318|P21589-2|NT5E	nc|ENSG00000135318|P21589-2|NT5E	MULTI-SECPEP	A375_MHC_IP_R2	2	522.2338256835938	2	521.834591	1041.65463	-0.62994	-0.00032872	-0.86701	-0.00045244	-1.497	-0.00078116	521.8340744870083	41.766	0.45938	42.54	42.3	42.759	0.77451					18	8	3	0	0	0	0.23894	1	15477	15477		33.445	7.1768	1	7928100			27551	4668	19660	19823	27011	27011					0.13546881782417586
KTLPADVQNY	10	Unmodified	_KTLPADVQNY_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;nc|ENSG00000139218|Q99590-2|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-SECPEP	A375_MHC_IP_R1	1	575.2009887695312	2	574.800946	1147.58734	-0.46058	-0.00026474	0.25723	0.00014786	-0.20335	-0.00011688	574.8012783558635	38.386	0.45901	38.386	38.118	38.577	0					18	8	3	0	0	0	0.10905	1	13025	13025		75.571	26.016	1	11508000			27552	5060	19661	19824	27012	27012					0.019448067808070846
KTLPADVQNY	10	Unmodified	_KTLPADVQNY_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;nc|ENSG00000139218|Q99590-2|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-SECPEP	A375_MHC_IP_R2	2	575.2005004882812	2	574.800946	1147.58734	-0.42989	-0.0002471	-0.37889	-0.00021779	-0.80878	-0.00046488	574.8007177528397	37.675	0.4093	38.45	38.227	38.636	0.77451					19	7	3	0	0	0	0.10905	1	13788	13788		75.571	29.871	1	12198000			27553	5060	19661	19824	27013	27013					0.019448067808070846
KTLPADVQNYY	11	Unmodified	_KTLPADVQNYY_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;nc|ENSG00000139218|Q99590-2|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	A375_MHC_IP_R1	1	656.7327270507812	2	656.33261	1310.65067	-0.4247	-0.00027875	0.26125	0.00017146	-0.16346	-0.00010728	656.3327034978566	54.759	0.6097	54.759	54.415	55.025	0					36	11	4	0	0	0	0.016266	1	19528	19528		115.06	65.505	1	23269000			27554	5060	19662	19825	27014	27014					0.0077674749804828025
KTLPADVQNYY	11	Unmodified	_KTLPADVQNYY_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;nc|ENSG00000139218|Q99590-2|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	A375_MHC_IP_R2	2	656.7321166992188	2	656.33261	1310.65067	-1.2016	-0.00078865	0.42444	0.00027857	-0.77717	-0.00051008	656.3328835464049	54.179	0.50961	54.93	54.608	55.118	0.75081					30	9	4	0	0	0	0.00035777	1	20397	20397		146.68	88.958	1	21507000			27555	5060	19662	19825	27015	27015					0.0077674749804828025
KTLPCLVR	8	Unmodified	_KTLPCLVR_					0	0	0		ENST00000460495.5_1_3:137956301-138014731:+|nuORF;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8;ENST00000486832.1_1_3:137958292-137964088:+|nuORF;ARMC8|p.R376Gfs*10|1|0.32|ENSG00000114098|chr3:138245174-138245174|C/-|frameshift_variant;nc|ENSG00000114098|Q8IUR7-6|ARMC8	ENST00000460495.5_1_3:137956301-138014731:+|nuORF	ENST00000460495.5_1_3:137956301-138014731:+|nuORF	MSMS	A375_MHC_IP_R1	1	465.6849670410156	2	465.28368	928.552807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.59	1	126.59	126.09	127.09	0								0	0	0	0.16876	1	48361	48361		4.756	0.42677	1				27556	3196	19663	19826	27016	27016					0.08567312159004814
KTLPDILTF	9	Unmodified	_KTLPDILTF_					0	0	0		ENST00000544060.1_1_12:104359692-104373925:+|nuORF;ENSG00000139372|ENST00000392872|TDG;ENST00000543961.1_1_12:25956587-25956887:+|nuORF;ENST00000542926.5_1_12:104373661-104376713:+|nuORF;ENST00000545698.1_1_12:104359681-104373925:+|nuORF	ENST00000544060.1_1_12:104359692-104373925:+|nuORF	ENST00000544060.1_1_12:104359692-104373925:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	524.707763671875	2	524.307875	1046.6012	-0.2544	-0.00013339	-0.046085	-2.4163E-05	-0.30049	-0.00015755	524.3078070959825	107.21	1.9349	107.21	106.83	108.76	0					103	37	5	0	0	0	0.007896	2	39276	39276;39474		129.77	33.406	1	133860000			27557	5076	19664	19827	27017;27018	27017					0.07976084279880524
KTLPDILTF	9	Unmodified	_KTLPDILTF_					0	0	0		ENST00000544060.1_1_12:104359692-104373925:+|nuORF;ENSG00000139372|ENST00000392872|TDG;ENST00000543961.1_1_12:25956587-25956887:+|nuORF;ENST00000542926.5_1_12:104373661-104376713:+|nuORF;ENST00000545698.1_1_12:104359681-104373925:+|nuORF	ENST00000544060.1_1_12:104359692-104373925:+|nuORF	ENST00000544060.1_1_12:104359692-104373925:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	524.7072143554688	2	524.307875	1046.6012	-0.55524	-0.00029111	-0.038094	-1.9973E-05	-0.59333	-0.00031109	524.3078277135144	106.35	1.8309	107.11	106.68	108.51	0.75977					97	35	5	0	0	0	0.0090297	2	40116	40116;40311		99.755	17.226	1	143700000			27558	5076	19664	19827	27019;27020	27019					0.07976084279880524
KTLPETSLPNY	11	Unmodified	_KTLPETSLPNY_					0	0	0		nc|ENSG00000122591|Q9BYI3-3|HYCC1;ENSG00000122591|ENST00000432176|HYCC1;ENST00000467005.5_1_7:23023511-23030730:-|nuORF	nc|ENSG00000122591|Q9BYI3-3|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	MULTI-SECPEP	A375_MHC_IP_R2	2	631.4682006835938	2	631.834985	1261.65542	-0.88952	-0.00056203	0.78999	0.00049914	-0.099531	-6.2887E-05	631.8352306700862	55.41	0.35368	56.161	55.984	56.337	0.75075					11	6	2	0	0	0	0.9398	1	20958	20958		21.59	18.595	1	1806200			27559	14572	19665	19828	27021	27021					0.03505631640837237
KTLPTEAMW	9	Oxidation (M)	_KTLPTEAM(Oxidation (M))W_		KTLPTEAM(1)W		KTLPTEAM(89)W	0	0	1		ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	A375_MHC_IP_R1	1	547.1727294921875	2	546.773342	1091.53213	-0.53525	-0.00029266	-0.054922	-3.003E-05	-0.59017	-0.00032269	546.7732868884837	50.342	0.81934	50.342	49.793	50.613	0					48	15	4	0	0	0	0.015356	3	17813	17788;17813;17840		89.401	49.443	1	11366000			27560	2825	19666	19829	27022;27023;27024	27023		128			-0.009973230113246245
KTLPTEAMW	9	Oxidation (M)	_KTLPTEAM(Oxidation (M))W_		KTLPTEAM(1)W		KTLPTEAM(46)W	0	0	1		ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	A375_MHC_IP_R2	2	547.6974487304688	2	546.773342	1091.53213	-1.0643	-0.00058194	0.22174	0.00012124	-0.84258	-0.0004607	546.7733858420759	49.469	1.1173	50.226	49.588	50.706	0.75737					50	21	4	0	0	0	0.12771	1	18627	18627		45.7	11.597	1	8332400			27561	2825	19666	19829	27025	27025		128			-0.009973230113246245
KTLQKLDEY	9	Unmodified	_KTLQKLDEY_					0	0	0		ENSG00000169504|ENST00000374379|CLIC4;ENST00000453177.2_1_9:22747885-22748107:+|nuORF	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-SECPEP	A375_MHC_IP_R1	1	380.27655029296875	3	379.876523	1136.60774	0.091138	3.4621E-05	0.076861	2.9198E-05	0.168	6.3819E-05	379.87648780797576	26.968	0.40099	26.968	26.677	27.078	0					12	7	2	0	0	0	0.76827	1	8080	8080		7.1017	3.7821	1	2186500			27562	7410	19667	19830	27026	27026					0.044899774406076176
KTLQLETSF	9	Unmodified	_KTLQLETSF_					0	0	0		ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	MULTI-SECPEP	A375_MHC_IP_R1	1	534.1932373046875	2	533.792589	1065.57063	-0.65064	-0.0003473	-0.39271	-0.00020963	-1.0433	-0.00055693	533.7924177350084	63.877	0.56162	63.877	63.529	64.09	0					15	10	2	0	0	0	0.43207	1	23142	23142		40.239	12.61	1	2153600			27563	6825	19668	19831	27027	27027					0.04046305894848956
KTLSAILRICS	11	Unmodified	_KTLSAILRICS_					0	0	0		ENST00000476007.2_3_3:58293695-58303220:+|nuORF;ENST00000461393.5_1_3:58292349-58303220:+|nuORF;ENSG00000163684|ENST00000295959|RPP14;ENST00000481972.5_1_3:58292052-58303220:+|nuORF;ENST00000477305.5_1_3:58292052-58303220:+|nuORF	ENST00000476007.2_3_3:58293695-58303220:+|nuORF	ENST00000476007.2_3_3:58293695-58303220:+|nuORF	MSMS	A375_MHC_IP_R2	2	402.2963562011719	3	402.240919	1203.70093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.819	1	48.58	48.08	49.08	0.76128								0	0	0	0.1624	1	17942	17942		6.2344	1.5184	1				27564	6708	19669	19832	27028	27028					0.10722578622198853
KTLSDIFLLF	10	Unmodified	_KTLSDIFLLF_					0	0	0		ENSG00000151465|ENST00000281141|CDC123	ENSG00000151465|ENST00000281141|CDC123	ENSG00000151465|ENST00000281141|CDC123	MULTI-MSMS	A375_MHC_IP_R1	1	599.2494506835938	2	598.849907	1195.68526	-0.62441	-0.00037393	-0.28664	-0.00017166	-0.91105	-0.00054558	598.849817432764	131.55	0.20255	131.55	131.48	131.68	0					7	3	3	0	0	0	0.24209	1	50744	50744		59.368	3.1913	1	9111400			27565	5908	19670	19833	27029	27029					0.0952461537679028
KTLSDVQKF	9	Unmodified	_KTLSDVQKF_					0	0	0		nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	MULTI-SECPEP	A375_MHC_IP_R1	1	356.2695617675781	3	355.86948	1064.58661	-0.4437	-0.0001579	0.68132	0.00024246	0.23762	8.4561E-05	355.86975362252304	29.434	0.70653	29.434	28.996	29.703	0					23	13	3	0	0	0	0.59927	1	9196	9196		23.801	8.0624	1	17571000			27566	1489	19671	19834	27030	27030					0.05690012131753974
KTLSDVQKF	9	Unmodified	_KTLSDVQKF_					0	0	0		nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	MULTI-SECPEP	A375_MHC_IP_R1	1	533.7002563476562	2	533.300581	1064.58661	-1.1066	-0.00059014	0.04201	2.2404E-05	-1.0646	-0.00056773	533.3005414733444	29.384	0.40593	29.384	29.047	29.453	0					18	7	4	0	0	0	0.39266	1	9190	9190		35.612	3.5748	1	21867000			27567	1489	19671	19834	27031	27031					0.05690012131753974
KTLSDVQKF	9	Unmodified	_KTLSDVQKF_					0	0	0		nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	MULTI-SECPEP	A375_MHC_IP_R2	2	533.6998291015625	2	533.300581	1064.58661	-1.3007	-0.00069369	-0.28854	-0.00015388	-1.5893	-0.00084757	533.3004620596289	28.586	0.45474	29.285	28.929	29.384	0.69872					14	8	3	0	0	0	0.01101	1	9908	9908		139.38	18.032	1	20268000			27568	1489	19671	19834	27032	27032					0.05690012131753974
KTLSPRELW	9	Unmodified	_KTLSPRELW_					0	0	0		nc|ENSG00000089351|Q96CP6-2|GRAMD1A;nc|ENSG00000089351|Q96CP6-3|GRAMD1A;ENSG00000089351|ENST00000317991|GRAMD1A;ENST00000598580.1_1_19:35502446-35504273:+|nuORF	nc|ENSG00000089351|Q96CP6-2|GRAMD1A	nc|ENSG00000089351|Q96CP6-2|GRAMD1A	MULTI-SECPEP	A375_MHC_IP_R2	2	565.7214965820312	2	565.321848	1128.62914	-0.58356	-0.0003299	-0.22049	-0.00012465	-0.80405	-0.00045455	565.3218980412323	51.216	0.50571	51.968	51.663	52.169	0.75225					15	9	2	0	0	0	0.53098	1	19279	19279		27.223	8.8501	1	1386900			27569	1927	19672	19835	27033	27033					0.0699740725999618
KTLTPDQW	8	Unmodified	_KTLTPDQW_					0	0	0		ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B;ENST00000567436.1_1_16:30204298-30204508:-|nuORF	ENSG00000183336|ENST00000330978|BOLA2	ENSG00000183336|ENST00000330978|BOLA2	MULTI-MSMS	A375_MHC_IP_R1	1	495.1584167480469	2	494.758549	987.502546	-0.1471	-7.2779E-05	-0.14049	-6.951E-05	-0.28759	-0.00014229	494.7584249495936	47.978	0.91001	47.978	47.263	48.173	0					25	17	3	0	0	0	0.16498	1	16898	16898		79.596	47.291	1	4077400			27570	7425	19673	19836	27034	27034					0.008294810348388637
KTLTPDQW	8	Unmodified	_KTLTPDQW_					0	0	0		ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B;ENST00000567436.1_1_16:30204298-30204508:-|nuORF	ENSG00000183336|ENST00000330978|BOLA2	ENSG00000183336|ENST00000330978|BOLA2	MULTI-SECPEP	A375_MHC_IP_R2	2	495.1585693359375	2	494.758549	987.502546	-0.2921	-0.00014452	0.38438	0.00019018	0.092287	4.566E-05	494.7586473977803	47.235	0.56065	47.996	47.563	48.123	0.76128					17	10	2	0	0	0	0.24136	1	17697	17697		85.642	51.539	1	5473400			27571	7425	19673	19836	27035	27035					0.008294810348388637
KTLTQGGVTY	10	Unmodified	_KTLTQGGVTY_					0	0	0		ENSG00000183386|ENST00000373016|FHL3	ENSG00000183386|ENST00000373016|FHL3	ENSG00000183386|ENST00000373016|FHL3	MULTI-SECPEP	A375_MHC_IP_R1	1	534.6900634765625	2	534.290214	1066.56587	-0.86802	-0.00046378	-0.41915	-0.00022395	-1.2872	-0.00068773	534.2899450036255	32.413	0.45383	32.413	32.231	32.684	0					25	8	4	0	0	0	0.051307	1	10470	10470		97.741	27.409	1	15941000			27572	8490	19674	19837	27036	27036					0.035254217521242026
KTLTQGGVTY	10	Unmodified	_KTLTQGGVTY_					0	0	0		ENSG00000183386|ENST00000373016|FHL3	ENSG00000183386|ENST00000373016|FHL3	ENSG00000183386|ENST00000373016|FHL3	MULTI-MSMS	A375_MHC_IP_R2	2	534.689697265625	2	534.290214	1066.56587	-0.79863	-0.0004267	-0.20242	-0.00010815	-1.001	-0.00053485	534.2900608458979	31.695	0.4566	32.432	32.198	32.654	0.73691					20	8	4	0	0	0	0.011463	1	11206	11206		111.31	40.977	1	17385000			27573	8490	19674	19837	27037	27037					0.035254217521242026
KTLVNPANVTF	11	Unmodified	_KTLVNPANVTF_					0	0	0		nc|ENSG00000120992|O75608-2|LYPLA1;ENSG00000120992|ENST00000316963|LYPLA1;ENST00000520718.1_1_8:54960627-54965328:-|nuORF	nc|ENSG00000120992|O75608-2|LYPLA1	nc|ENSG00000120992|O75608-2|LYPLA1	MULTI-SECPEP	A375_MHC_IP_R1	1	602.740234375	2	602.340238	1202.66592	-0.2303	-0.00013872	-0.14136	-8.5145E-05	-0.37166	-0.00022386	602.3402126128886	71.234	0.51318	71.234	70.902	71.415	0					27	9	4	0	0	0	0.060079	1	25847	25847		87.123	31.621	1	5797100			27574	3702	19675	19838	27038	27038					0.07269659085886815
KTLVNPANVTF	11	Unmodified	_KTLVNPANVTF_					0	0	0		nc|ENSG00000120992|O75608-2|LYPLA1;ENSG00000120992|ENST00000316963|LYPLA1;ENST00000520718.1_1_8:54960627-54965328:-|nuORF	nc|ENSG00000120992|O75608-2|LYPLA1	nc|ENSG00000120992|O75608-2|LYPLA1	MULTI-SECPEP	A375_MHC_IP_R2	2	602.7396850585938	2	602.340238	1202.66592	-0.43287	-0.00026073	-0.33091	-0.00019932	-0.76378	-0.00046005	602.3400625789493	70.486	0.55807	71.221	70.895	71.453	0.73421					29	10	4	0	0	0	0.28137	1	26689	26689		78.61	26.342	1	9092500			27575	3702	19675	19838	27039	27039					0.07269659085886815
KTLYATSYNR	10	Unmodified	_KTLYATSYNR_					0	0	0			REV__F2RL2|p.H367Y|1|0.46|ENSG00000164220|chr5:76617608-76617608|G/A|missense_variant	REV__F2RL2|p.H367Y|1|0.46|ENSG00000164220|chr5:76617608-76617608|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	406.6152038574219	3	406.215539	1215.62479	-0.31086	-0.00012627	0.052152	2.1185E-05	-0.2587	-0.00010509	406.21553472210127	20.271	0.66114	20.881	20.6	21.262	0.61029					18	12	2	0	0	0	0.90513	1	6304	6304		4.7159	0	1	1865800	+		27576	26600	19676	19839	27040	27040					0.02559898046388298
KTMDGASGENE	11	Unmodified	_KTMDGASGENE_					0	0	0		ITPR1|p.E1151K|1|0.36|ENSG00000150995|chr3:4683751-4683751|G/A|missense_variant	ITPR1|p.E1151K|1|0.36|ENSG00000150995|chr3:4683751-4683751|G/A|missense_variant	ITPR1|p.E1151K|1|0.36|ENSG00000150995|chr3:4683751-4683751|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	1139.4222412109375	1	1138.46809	1137.46082	-0.15792	-0.00017978	0.33423	0.00038052	0.17632	0.00020073	1138.4684311452108	61.754	1.5161	62.497	62.068	63.584	0.74263					88	29	5	0	0	0	0.51633	1	23684	23684		29.841	7.1043	1	133790000			27577	14182	19677	19840	27041	27041					-0.10241487506641533
KTMEGSEESHR	11	Unmodified	_KTMEGSEESHR_					0	0	0		ENST00000285518.10_1_8:6605280-6605346:+|nuORF	ENST00000285518.10_1_8:6605280-6605346:+|nuORF	ENST00000285518.10_1_8:6605280-6605346:+|nuORF	MSMS	A375_MHC_IP_R1	1	430.6552734375	3	430.862948	1289.56701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.933	1	38.933	38.433	39.433	0								0	0	0	0.1634	1	13256	13256		1.0136	0.23704	1				27578	10445	19678	19841	27042	27042					-0.06618731941307487
KTMEKPHGY	9	Unmodified	_KTMEKPHGY_					0	0	0		nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;TEP1|p.Y977Mfs*28|1|0.26|ENSG00000129566|chr14:20386128-20386128|A/-|frameshift_variant	nc|ENSG00000129566|Q99973-2|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	MULTI-MSMS	A375_MHC_IP_R2	2	546.1735229492188	2	545.771134	1089.52771	-1.0622	-0.00057971	1.9758	0.0010783	0.91364	0.00049864	545.774137674033	28.353	0.81152	29.031	28.452	29.263	0.67857					27	15	3	0	0	0	0.55471	1	9708	9708		17.113	3.2068	1	4224000			27579	4199	19679	19842	27043	27043					-0.013467874342040886
KTMKGFEY	8	Unmodified	_KTMKGFEY_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-SECPEP	A375_MHC_IP_R1	1	502.45367431640625	2	502.249503	1002.48445	-0.50908	-0.00025569	-0.52277	-0.00026256	-1.0319	-0.00051825	502.2494264815765	27.623	0.55507	27.623	27.432	27.987	0					26	10	4	0	0	0	0.67594	1	8400	8400		20.581	6.1756	1	9296100			27580	7392	19680	19843	27044	27044					-0.01668977211500078
KTMKGFEY	8	Unmodified	_KTMKGFEY_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-SECPEP	A375_MHC_IP_R2	2	502.64947509765625	2	502.249503	1002.48445	-0.7683	-0.00038588	0.13198	6.6288E-05	-0.63632	-0.00031959	502.2496646719771	26.938	0.66574	27.598	27.414	28.08	0.65992					26	12	4	0	0	0	0.84541	1	9157	9157		27.223	6.8087	1	9811500			27581	7392	19680	19843	27045	27045					-0.01668977211500078
KTNGITPRRW	10	Unmodified	_KTNGITPRRW_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENSG00000068976|ENST00000164139|PYGM;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R1	1	410.6350402832031	3	410.235156	1227.68364	0.2197	9.0128E-05	-0.37095	-0.00015218	-0.15126	-6.205E-05	410.23505123928084	21.323	0.96573	21.323	20.69	21.656	0					39	18	3	0	0	0	0.24209	1	5442	5442		44.945	25.801	1	4566000			27582	2241;2187	19681	19844	27046	27046					0.0789041913139954
KTNGITPRRW	10	Unmodified	_KTNGITPRRW_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENSG00000068976|ENST00000164139|PYGM;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R2	2	410.63494873046875	3	410.235156	1227.68364	-0.27896	-0.00011444	-0.088347	-3.6243E-05	-0.36731	-0.00015068	410.23510563873543	19.554	0.75889	20.164	19.74	20.499	0.61029					38	14	4	0	0	0	0.58757	1	5967	5967		21.799	21.799	1	5818100			27583	2241;2187	19681	19844	27047	27047					0.0789041913139954
KTNGKIPK	8	Unmodified	_KTNGKIPK_					0	0	0			REV__ENSG00000143971|ENST00000272342|ETAA1	REV__ENSG00000143971|ENST00000272342|ETAA1	MULTI-SECPEP	A375_MHC_IP_R2	2	443.67913818359375	2	443.279452	884.544351	-0.50363	-0.00022325	0.070336	3.1179E-05	-0.4333	-0.00019207	443.2794314857409	28.038	0.35572	28.717	28.553	28.909	0.67857					10	6	2	0	0	0	0.972	1	9693	9693		7.609	3.2797	1	2510400	+		27584	19401	19682	19845	27048	27048					0.09746081514026628
KTNILLRYL	9	Unmodified	_KTNILLRYL_					0	0	0		ENST00000557196.1_1_14:45356671-45356932:-|nuORF;ENST00000594501.1_1_19:17426612-17430462:+|nuORF;ENSG00000130311|ENST00000359866|DDA1	ENST00000557196.1_1_14:45356671-45356932:-|nuORF	ENST00000557196.1_1_14:45356671-45356932:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	379.3074035644531	3	378.572886	1132.69683	0.30558	0.00011568	-0.12201	-4.619E-05	0.18357	6.9494E-05	378.57275738434976	77.274	0.50577	77.274	76.981	77.486	0					16	9	2	0	0	0	0.63327	1	28200	28200		8.9762	0	1	1628200			27585	4236	19683	19846	27049	27049					0.13578857190805138
KTNILLRYL	9	Unmodified	_KTNILLRYL_					0	0	0		ENST00000557196.1_1_14:45356671-45356932:-|nuORF;ENST00000594501.1_1_19:17426612-17430462:+|nuORF;ENSG00000130311|ENST00000359866|DDA1	ENST00000557196.1_1_14:45356671-45356932:-|nuORF	ENST00000557196.1_1_14:45356671-45356932:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	378.9729309082031	3	378.572886	1132.69683	0.12478	4.724E-05	-0.39736	-0.00015043	-0.27258	-0.00010319	378.572731744977	76.139	0.50624	76.88	76.64	77.146	0.74052					19	9	3	0	0	0	0.23226	1	28922	28922		35.612	16.891	1	2249000			27586	4236	19683	19846	27050	27050					0.13578857190805138
KTNVFNATF	9	Unmodified	_KTNVFNATF_					0	0	0		ENST00000589493.1_1_17:40967924-40970674:-|nuORF;ENSG00000126581|ENST00000590099|BECN1	ENST00000589493.1_1_17:40967924-40970674:-|nuORF	ENST00000589493.1_1_17:40967924-40970674:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	521.6710205078125	2	521.271824	1040.5291	-0.91261	-0.00047572	-0.107	-5.5775E-05	-1.0196	-0.00053149	521.2716155125639	61.842	0.404	62.585	62.37	62.774	0.74263					15	7	3	0	0	0	0.36834	1	23468	23468		26.268	3.5319	1	1855100			27587	4050	19684	19847	27051	27051					0.010451699261693648
KTNVPVKL	8	Unmodified	_KTNVPVKL_					0	0	0		nc|ENSG00000125970|Q9UKM9-2|RALY;ENSG00000125970|ENST00000246194|RALY;ENST00000488227.1_1_20:32663701-32663851:+|nuORF	nc|ENSG00000125970|Q9UKM9-2|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	MULTI-SECPEP	A375_MHC_IP_R1	1	450.189697265625	2	449.789653	897.564752	-0.30449	-0.00013696	0.17365	7.8106E-05	-0.13084	-5.8851E-05	449.78967504322435	28.87	0.45516	28.87	28.694	29.149	0					15	8	2	0	0	0	0.28442	1	8980	8980		78.728	32.707	1	2675500			27588	4015	19685	19848	27052	27052					0.11187252173851903
KTNVPVKL	8	Unmodified	_KTNVPVKL_					0	0	0		nc|ENSG00000125970|Q9UKM9-2|RALY;ENSG00000125970|ENST00000246194|RALY;ENST00000488227.1_1_20:32663701-32663851:+|nuORF	nc|ENSG00000125970|Q9UKM9-2|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	MULTI-SECPEP	A375_MHC_IP_R2	2	450.1893310546875	2	449.789653	897.564752	-0.51867	-0.00023329	0.14566	6.5518E-05	-0.373	-0.00016777	449.78960031646193	28.154	0.40594	28.833	28.604	29.01	0.67857					13	7	2	0	0	0	0.82487	1	9728	9728		34.932	5.8505	1	3540500			27589	4015	19685	19848	27053	27053					0.11187252173851903
KTNVPVKLF	9	Unmodified	_KTNVPVKLF_					0	0	0		nc|ENSG00000125970|Q9UKM9-2|RALY;ENSG00000125970|ENST00000246194|RALY;ENST00000488227.1_1_20:32663701-32663851:+|nuORF	nc|ENSG00000125970|Q9UKM9-2|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	MULTI-MSMS	A375_MHC_IP_R1	1	523.7235717773438	2	523.32386	1044.63317	-0.279	-0.00014601	-0.30444	-0.00015932	-0.58344	-0.00030533	523.3235978466604	54.04	0.80938	54.04	53.758	54.567	0					41	15	4	0	0	0	0.010044	1	19255	19255		125.04	79.017	1	23009000			27590	4015	19686	19849	27054	27054					0.1126349675369056
KTNVPVKLF	9	Unmodified	_KTNVPVKLF_					0	0	0		nc|ENSG00000125970|Q9UKM9-2|RALY;ENSG00000125970|ENST00000246194|RALY;ENST00000488227.1_1_20:32663701-32663851:+|nuORF	nc|ENSG00000125970|Q9UKM9-2|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	MULTI-SECPEP	A375_MHC_IP_R2	2	523.7232055664062	2	523.32386	1044.63317	-1.1192	-0.00058571	0.014859	7.7758E-06	-1.1044	-0.00057793	523.3237527350385	53.103	0.55904	53.854	53.588	54.147	0.75105					29	10	3	0	0	0	0.044425	1	19988	19988		78.06	49.574	1	19251000			27591	4015	19686	19849	27055	27055					0.1126349675369056
KTPDQAILW	9	Unmodified	_KTPDQAILW_					0	0	0		ENSG00000165661|ENST00000358701|QSOX2	ENSG00000165661|ENST00000358701|QSOX2	ENSG00000165661|ENST00000358701|QSOX2	MULTI-SECPEP	A375_MHC_IP_R2	2	536.6949462890625	2	536.295299	1070.57605	-0.8209	-0.00044025	-0.054057	-2.899E-05	-0.87496	-0.00046924	536.2956470512573	73.61	0.66343	74.346	73.938	74.602	0.73541					33	12	4	0	0	0	0.50484	1	27920	27920		22.658	0	1	2920400			27592	6976	19687	19850	27056	27056					0.04358029477339187
KTPEEIRKTF	10	Unmodified	_KTPEEIRKTF_					0	0	0		nc|ENSG00000113558|P63208-2|SKP1;ENSG00000113558|ENST00000353411|SKP1	nc|ENSG00000113558|P63208-2|SKP1	nc|ENSG00000113558|P63208-2|SKP1	MULTI-MSMS	A375_MHC_IP_R1	1	417.30291748046875	3	416.903072	1247.68739	-0.030129	-1.2561E-05	-0.093648	-3.9042E-05	-0.12378	-5.1603E-05	416.9030110178053	23.838	0.60963	23.838	23.635	24.245	0					32	11	4	0	0	0	0.011603	1	6622	6622		115.82	69.799	1	60219000			27593	3160	19688	19851	27057	27057					0.07345044114595112
KTPEEIRKTF	10	Unmodified	_KTPEEIRKTF_					0	0	0		nc|ENSG00000113558|P63208-2|SKP1;ENSG00000113558|ENST00000353411|SKP1	nc|ENSG00000113558|P63208-2|SKP1	nc|ENSG00000113558|P63208-2|SKP1	MULTI-MSMS	A375_MHC_IP_R2	2	417.3030700683594	3	416.903072	1247.68739	-0.37846	-0.00015778	0.28731	0.00011978	-0.091156	-3.8003E-05	416.9030559583571	21.846	0.30711	22.465	22.285	22.592	0.61932					12	5	3	0	0	0	0.6614	1	6928	6928		16.275	4.047	1	2506700			27594	3160	19688	19851	27058	27058					0.07345044114595112
KTPEEIRKTF	10	Unmodified	_KTPEEIRKTF_					0	0	0		nc|ENSG00000113558|P63208-2|SKP1;ENSG00000113558|ENST00000353411|SKP1	nc|ENSG00000113558|P63208-2|SKP1	nc|ENSG00000113558|P63208-2|SKP1	MULTI-MSMS	A375_MHC_IP_R2	2	417.3028869628906	3	416.903072	1247.68739	-0.32087	-0.00013377	0.30377	0.00012664	-0.017097	-7.128E-06	416.90312883747055	23.625	0.45533	24.255	23.979	24.435	0.63014					18	8	4	0	0	0	0.0047246	1	7624	7624		101.12	61.703	1	12018000			27595	3160	19688	19851	27059	27059					0.07345044114595112
KTPEEIRKTF	10	Unmodified	_KTPEEIRKTF_					0	0	0		nc|ENSG00000113558|P63208-2|SKP1;ENSG00000113558|ENST00000353411|SKP1	nc|ENSG00000113558|P63208-2|SKP1	nc|ENSG00000113558|P63208-2|SKP1	MULTI-SECPEP	A375_MHC_IP_R2	2	417.30291748046875	3	416.903072	1247.68739	-0.38342	-0.00015985	-0.056641	-2.3614E-05	-0.44006	-0.00018346	416.90298703553157	23.031	0.76412	23.661	23.164	23.928	0.63014					43	14	5	0	0	0	0.038301	1	7310	7310		106.37	60.343	1	28653000			27596	3160	19688	19851	27060	27060					0.07345044114595112
KTPEKEPPLW	10	Unmodified	_KTPEKEPPLW_					0	0	0		nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4	nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000196862|ENST00000408999|RGPD4	MULTI-MSMS	A375_MHC_IP_R1	1	409.2923278808594	3	408.892284	1223.65502	-0.42795	-0.00017498	0.4642	0.00018981	0.036253	1.4824E-05	408.8924482370659	41.421	1.2696	41.421	40.863	42.132	0					49	24	3	0	0	0	0.27023	2	14235	14235;14365		42.068	13.834	1	8409000			27597	8657;9090	19689	19852	27061;27062	27061					0.0521425671158795
KTPEKEPPLW	10	Unmodified	_KTPEKEPPLW_					0	0	0		nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4	nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000196862|ENST00000408999|RGPD4	MULTI-MSMS	A375_MHC_IP_R1	1	613.234619140625	2	612.834788	1223.65502	-0.6583	-0.00040343	0.29761	0.00018238	-0.36069	-0.00022104	612.8348778031808	41.368	0.865	41.368	40.963	41.828	0					34	16	3	0	0	0	0.034789	1	14239	14239		100.71	42.987	1	4136100			27598	8657;9090	19689	19852	27063	27063					0.0521425671158795
KTPEKEPPLW	10	Unmodified	_KTPEKEPPLW_					0	0	0		nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4	nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000196862|ENST00000408999|RGPD4	MULTI-MSMS	A375_MHC_IP_R2	2	409.2921142578125	3	408.892284	1223.65502	-0.097802	-3.9991E-05	0.16036	6.557E-05	0.062558	2.558E-05	408.89228255837406	40.523	1.0674	41.297	40.777	41.845	0.77451					55	20	4	0	0	0	0.24209	1	14949	14949		44.945	15.664	1	7604000			27599	8657;9090	19689	19852	27064	27064					0.0521425671158795
KTPEKEPPLW	10	Unmodified	_KTPEKEPPLW_					0	0	0		nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4	nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000196862|ENST00000408999|RGPD4	MULTI-MSMS	A375_MHC_IP_R2	2	613.2349243164062	2	612.834788	1223.65502	-0.65736	-0.00040285	0.054646	3.3489E-05	-0.60271	-0.00036936	612.8348288614959	40.517	0.96545	41.292	40.828	41.794	0.77451					35	18	3	0	0	0	0.062809	1	14988	14988		91.085	58.299	1	4310000			27600	8657;9090	19689	19852	27065	27065					0.0521425671158795
KTPEVIRLF	9	Unmodified	_KTPEVIRLF_					0	0	0		ENSG00000162441|ENST00000377223|LZIC;nc|ENSG00000162441|Q8WZA0-2|LZIC	ENSG00000162441|ENST00000377223|LZIC	ENSG00000162441|ENST00000377223|LZIC	MULTI-SECPEP	A375_MHC_IP_R1	1	551.1089477539062	2	551.834591	1101.65463	-0.32389	-0.00017873	0.41931	0.00023139	0.095422	5.2657E-05	551.8348026175494	71.983	0.50551	71.983	71.715	72.22	0					18	9	3	0	0	0	0.74169	1	26172	26172		7.609	2.3121	1	3969800			27601	6536	19690	19853	27066	27066					0.10786881782405544
KTPEVIRLF	9	Unmodified	_KTPEVIRLF_					0	0	0		ENSG00000162441|ENST00000377223|LZIC;nc|ENSG00000162441|Q8WZA0-2|LZIC	ENSG00000162441|ENST00000377223|LZIC	ENSG00000162441|ENST00000377223|LZIC	MULTI-MSMS	A375_MHC_IP_R2	2	552.2341918945312	2	551.834591	1101.65463	-0.90463	-0.00049921	0.22831	0.00012599	-0.67633	-0.00037322	551.8346944125889	70.998	0.60827	71.732	71.402	72.01	0.73421					17	11	2	0	0	0	0.41856	2	26950	26913;26950		24.991	13.351	1	2823900			27602	6536	19690	19853	27067;27068	27068					0.10786881782405544
KTPEVIRLF	9	Unmodified	_KTPEVIRLF_					0	0	0		ENSG00000162441|ENST00000377223|LZIC;nc|ENSG00000162441|Q8WZA0-2|LZIC	ENSG00000162441|ENST00000377223|LZIC	ENSG00000162441|ENST00000377223|LZIC	MULTI-MSMS	A375_MHC_IP_R2	2	368.6256408691406	3	368.225486	1101.65463	0.085496	3.1482E-05	0.20568	7.5738E-05	0.29118	0.00010722	368.22551209162725	70.956	0.60867	71.69	71.453	72.061	0.73421					23	11	3	0	0	0	0.54799	1	26975	26975		17.443	3.0373	1	3440500			27603	6536	19690	19853	27069	27069					0.10786881782405544
KTPFAMGLV	9	Unmodified	_KTPFAMGLV_					0	0	0			REV__nc|ENSG00000112531|Q96PU8-9|QKI	REV__nc|ENSG00000112531|Q96PU8-9|QKI	MULTI-SECPEP	A375_MHC_IP_R2	2	481.6834716796875	2	482.270238	962.525924	-0.49692	-0.00023965	-0.07455	-3.5953E-05	-0.57147	-0.00027561	482.2700241751643	133.56	0.15144	133.73	133.65	133.8	0.16487					4	2	2	0	0	0	0.8028	1	52523	52523		4.3292	1.44	1	1497900	+		27604	27178	19691	19854	27070	27070					0.04316203547830355
KTPFAMGLV	9	Unmodified	_KTPFAMGLV_					0	0	0			REV__nc|ENSG00000112531|Q96PU8-9|QKI	REV__nc|ENSG00000112531|Q96PU8-9|QKI	MULTI-MATCH	A375_MHC_IP_R1	1		2	482.270238	962.525924	-0.61673	-0.00029743	-1.1964	-0.00057697	-1.8131	-0.0008744	482.2693143099674	133.79	0.2012	133.79	133.66	133.86	0	0.030128	-0.00081674	NaN	4.3292	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1691800	+		27605	27178	19691	19854							0.04316203547830355
KTPGKAYLF	9	Unmodified	_KTPGKAYLF_					0	0	0		ENST00000397776.2_1_1:158424733-158425060:+|nuORF;nc|ENSG00000149547|O14681-3|EI24;ENSG00000149547|ENST00000278903|EI24	ENST00000397776.2_1_1:158424733-158425060:+|nuORF	ENST00000397776.2_1_1:158424733-158425060:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	513.1945190429688	2	512.794935	1023.57532	-0.079678	-4.0858E-05	-0.39149	-0.00020075	-0.47116	-0.00024161	512.7946776745393	38.871	0.50807	38.871	38.628	39.136	0					21	9	3	0	0	0	0.16764	1	13210	13210		60.074	22.1	1	13609000			27606	5812	19692	19855	27071	27071					0.0644723482827203
KTPGKAYLF	9	Unmodified	_KTPGKAYLF_					0	0	0		ENST00000397776.2_1_1:158424733-158425060:+|nuORF;nc|ENSG00000149547|O14681-3|EI24;ENSG00000149547|ENST00000278903|EI24	ENST00000397776.2_1_1:158424733-158425060:+|nuORF	ENST00000397776.2_1_1:158424733-158425060:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	513.1943359375	2	512.794935	1023.57532	-0.94087	-0.00048247	0.20029	0.00010271	-0.74057	-0.00037976	512.7949284362597	37.836	0.6158	38.611	38.33	38.946	0.77451					25	11	3	0	0	0	0.30925	1	13886	13886		41.956	7.8531	1	11299000			27607	5812	19692	19855	27072	27072					0.0644723482827203
KTPGRGRG	8	Unmodified	_KTPGRGRG_					0	0	0		ENST00000296215.7_2_1:38019675-38019861:-|nuORF	ENST00000296215.7_2_1:38019675-38019861:-|nuORF	ENST00000296215.7_2_1:38019675-38019861:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	415.14349365234375	2	414.743568	827.472583	-0.091676	-3.8022E-05	0.059602	2.472E-05	-0.032074	-1.3303E-05	414.74350362305023	98.059	1.0686	98.819	97.978	99.047	0.75977					47	20	3	0	0	0	0.972	1	37063	37063		0.45834	0	1	3713700			27608	10503	19693	19856	27073	27073					0.051945868801908546
KTPLYSPLY	9	Unmodified	_KTPLYSPLY_					0	0	0			REV__ENST00000608279.1_1_2:133104147-133104555:-|nuORF	REV__ENST00000608279.1_1_2:133104147-133104555:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	541.2020263671875	2	541.30005	1080.58555	-0.88976	-0.00048163	0.825	0.00044657	-0.06476	-3.5055E-05	541.3005698102764	134.35	0.81032	134.35	133.97	134.78	0					24	15	3	0	0	0	0.72985	1	51875	51875		4.3292	0.38484	1	35756000	+		27609	26559	19694	19857	27074	27074					0.04847797762840855
KTPRKRLY	8	Unmodified	_KTPRKRLY_					0	0	0		TSHR|p.N372Tfs*40|1|0.29|ENSG00000165409|chr14:81143169-81143169|A/-|frameshift_variant	TSHR|p.N372Tfs*40|1|0.29|ENSG00000165409|chr14:81143169-81143169|A/-|frameshift_variant	TSHR|p.N372Tfs*40|1|0.29|ENSG00000165409|chr14:81143169-81143169|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	354.95709228515625	3	354.557459	1060.65055	-0.24433	-8.663E-05	-0.30942	-0.00010971	-0.55376	-0.00019634	354.5573616146306	27.839	0.35404	28.517	28.301	28.655	0.67857					12	6	2	0	0	0	0.972	1	9603	9603		9.3831	1.2276	1	1966500			27610	30083	19695	19858	27075	27075					0.12264837079374047
KTQEHGLFY	9	Unmodified	_KTQEHGLFY_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	MULTI-SECPEP	A375_MHC_IP_R1	1	375.26837158203125	3	374.857463	1121.55056	0.33602	0.00012596	-0.20739	-7.7741E-05	0.12863	4.8218E-05	374.8573360061518	36.116	0.65963	36.116	35.83	36.489	0					31	12	3	0	0	0	0.44554	1	12082	12082		34.222	5.7272	1	13683000			27611	7019	19696	19859	27076	27076					-0.005354450451022785
KTQEHGLFY	9	Unmodified	_KTQEHGLFY_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	MULTI-SECPEP	A375_MHC_IP_R1	1	562.1820678710938	2	561.782556	1121.55056	-0.4582	-0.00025741	0.30425	0.00017092	-0.15395	-8.6486E-05	561.7825225315955	36.08	0.71128	36.08	35.83	36.541	0					41	13	4	0	0	0	0.010673	1	12023	12023		165.72	113.45	1	15152000			27612	7019	19696	19859	27077	27077					-0.005354450451022785
KTQEHGLFY	9	Unmodified	_KTQEHGLFY_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	MULTI-MSMS	A375_MHC_IP_R2	2	562.6832885742188	2	561.782556	1121.55056	-0.81579	-0.0004583	0.47967	0.00026947	-0.33612	-0.00018883	561.7826627463215	35.142	0.91029	35.905	35.627	36.537	0.76338					39	17	4	0	0	0	0.037683	1	12713	12713		69.105	29.155	1	17496000			27613	7019	19696	19859	27078	27078					-0.005354450451022785
KTQEHGLFY	9	Unmodified	_KTQEHGLFY_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	MULTI-SECPEP	A375_MHC_IP_R2	2	375.25732421875	3	374.857463	1121.55056	0.084692	3.1747E-05	0.033382	1.2513E-05	0.11807	4.4261E-05	374.8573883748947	35.166	0.65579	35.93	35.677	36.333	0.76338					36	12	4	0	0	0	0.35628	1	12705	12705		40.725	19.135	1	12427000			27614	7019	19696	19859	27079	27079					-0.005354450451022785
KTQEKIWEF	9	Unmodified	_KTQEKIWEF_					0	0	0		nc|ENSG00000140598|Q7Z2Z2-2|EFL1;ENSG00000140598|ENST00000268206|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	MULTI-MSMS	A375_MHC_IP_R1	1	403.9482421875	3	403.548518	1207.62372	-0.3241	-0.00013079	0.46961	0.00018951	0.14552	5.8723E-05	403.54861591239967	56.059	0.55627	56.059	55.891	56.447	0					23	10	3	0	0	0	0.65637	1	20076	20076		10.899	3.4219	1	3375100			27615	5173	19697	19860	27080	27080					0.028216836775072807
KTQEKIWEF	9	Unmodified	_KTQEKIWEF_					0	0	0		nc|ENSG00000140598|Q7Z2Z2-2|EFL1;ENSG00000140598|ENST00000268206|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	MULTI-MSMS	A375_MHC_IP_R2	2	403.94866943359375	3	403.548518	1207.62372	-0.098588	-3.9785E-05	0.11349	4.5798E-05	0.014901	6.0134E-06	403.5484969396521	55.208	0.60968	55.959	55.678	56.287	0.75075					23	11	3	0	0	0	0.43945	1	20883	20883		22.775	1.9038	1	3566500			27616	5173	19697	19860	27081	27081					0.028216836775072807
KTQGPRALW	9	Unmodified	_KTQGPRALW_					0	0	0		ENST00000508781.5_1_5:110073914-110092698:+|nuORF;nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46	ENST00000508781.5_1_5:110073914-110092698:+|nuORF	ENST00000508781.5_1_5:110073914-110092698:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	529.2003173828125	2	528.801083	1055.58761	-0.47838	-0.00025297	-0.056033	-2.963E-05	-0.53442	-0.0002826	528.8009625933084	35.01	0.60997	35.01	34.759	35.369	0					33	11	4	0	0	0	0.0098085	1	11551	11551		114.2	85.715	1	25545000			27617	6802	19698	19861	27082	27082					0.0620427129131258
KTQGPRALW	9	Unmodified	_KTQGPRALW_					0	0	0		ENST00000508781.5_1_5:110073914-110092698:+|nuORF;nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46	ENST00000508781.5_1_5:110073914-110092698:+|nuORF	ENST00000508781.5_1_5:110073914-110092698:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	353.26971435546875	3	352.869814	1055.58761	-0.022532	-7.9509E-06	-0.10752	-3.7941E-05	-0.13005	-4.5892E-05	352.869741525149	35.033	0.91574	35.033	34.657	35.573	0					40	17	4	0	0	0	0.55534	1	11550	11550		20.581	5.3325	1	23988000			27618	6802	19698	19861	27083	27083					0.0620427129131258
KTQGPRALW	9	Unmodified	_KTQGPRALW_					0	0	0		ENST00000508781.5_1_5:110073914-110092698:+|nuORF;nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46	ENST00000508781.5_1_5:110073914-110092698:+|nuORF	ENST00000508781.5_1_5:110073914-110092698:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	353.26959228515625	3	352.869814	1055.58761	-0.63392	-0.00022369	0.1132	3.9944E-05	-0.52073	-0.00018375	352.8697857021144	34.076	0.76284	34.828	34.55	35.312	0.75225					32	14	3	0	0	0	0.48845	1	12223	12223		37.075	10.807	1	41019000			27619	6802	19698	19861	27084	27084					0.0620427129131258
KTQGPRALW	9	Unmodified	_KTQGPRALW_					0	0	0		ENST00000508781.5_1_5:110073914-110092698:+|nuORF;nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46	ENST00000508781.5_1_5:110073914-110092698:+|nuORF	ENST00000508781.5_1_5:110073914-110092698:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	529.2005004882812	2	528.801083	1055.58761	-0.95115	-0.00050297	-0.005923	-3.1321E-06	-0.95708	-0.0005061	528.8009434982492	34.076	0.61156	34.828	34.6	35.211	0.75225					29	11	4	0	0	0	0.041713	1	12234	12234		121.53	94.65	1	40540000			27620	6802	19698	19861	27085	27085					0.0620427129131258
KTQILNEEW	9	Unmodified	_KTQILNEEW_					0	0	0		nc|ENSG00000108799|Q92800-2|EZH1;ENSG00000108799|ENST00000428826|EZH1;nc|ENSG00000108799|Q92800-3|EZH1;ENST00000586103.5_1_17:40855746-40880959:-|nuORF;ENST00000590082.1_1_17:40876593-40880959:-|nuORF	nc|ENSG00000108799|Q92800-2|EZH1	nc|ENSG00000108799|Q92800-2|EZH1	MULTI-SECPEP	A375_MHC_IP_R1	1	581.2006225585938	2	580.800946	1159.58734	-0.10217	-5.9342E-05	0.32791	0.00019045	0.22574	0.00013111	581.3026304959149	62.713	0.46111	62.713	62.505	62.966	0					13	8	2	0	0	0	0.36673	1	22682	22682		38.615	11.392	1	1855700			27621	2839	19699	19862	27086	27086					0.013928067807910338
KTQYFHQEKW	10	Unmodified	_KTQYFHQEKW_					0	0	0		ENSG00000156804|ENST00000517956|FBXO32;ENST00000521719.5_1_8:124526414-124553254:-|nuORF;nc|ENSG00000156804|Q969P5-2|FBXO32;ENST00000520511.1_1_8:124539464-124553254:-|nuORF	ENSG00000156804|ENST00000517956|FBXO32	ENSG00000156804|ENST00000517956|FBXO32	MULTI-MSMS	A375_MHC_IP_R2	2	465.65032958984375	3	465.566571	1393.67788	-1.0071	-0.00046889	-0.00021535	-1.0026E-07	-1.0074	-0.00046899	465.566694588624	26.647	0.25311	27.307	27.161	27.414	0.65992					11	4	3	0	0	0	0.57132	1	9034	9034		23.016	14.571	1	2114100			27622	6210	19700	19863	27087	27087					-0.003207241709333175
KTRDDWLVSW	10	Unmodified	_KTRDDWLVSW_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	A375_MHC_IP_R1	1	436.2911682128906	3	435.891055	1304.65134	-0.33024	-0.00014395	0.11867	5.1729E-05	-0.21157	-9.2219E-05	435.8911119375259	84.184	0.70988	84.184	83.887	84.596	0					37	13	4	0	0	0	0.091534	1	30808	30808		50.13	17.514	1	8446000			27623	9866	19701	19864	27088	27088					0.01119586937738859
KTRDDWLVSW	10	Unmodified	_KTRDDWLVSW_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	A375_MHC_IP_R1	1	653.7329711914062	2	653.332944	1304.65134	-0.57665	-0.00037675	0.61464	0.00040157	0.037989	2.4819E-05	653.332571556693	84.171	0.4528	84.171	83.989	84.442	0					15	8	3	0	0	0	0.36543	1	30842	30842		57.249	9.6547	1	3185900			27624	9866	19701	19864	27089	27089					0.01119586937738859
KTRDDWLVSW	10	Unmodified	_KTRDDWLVSW_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	A375_MHC_IP_R2	2	436.6249084472656	3	435.891055	1304.65134	-0.24426	-0.00010647	-0.36064	-0.0001572	-0.60489	-0.00026367	435.8908650610281	83.386	0.5591	84.126	83.848	84.407	0.73962					34	10	4	0	0	0	0.10955	1	31684	31684		46.475	15.013	1	8995700			27625	9866	19701	19864	27090	27090					0.01119586937738859
KTRDDWLVSW	10	Unmodified	_KTRDDWLVSW_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	A375_MHC_IP_R2	2	653.730712890625	2	653.332944	1304.65134	-0.77008	-0.00050312	-0.84567	-0.0005525	-1.6157	-0.0010556	653.3321404172638	83.403	0.35618	84.142	83.898	84.254	0.73962					11	6	2	0	0	0	0.28986	1	31716	31716		40.725	10.021	1	3111700			27626	9866	19701	19864	27091	27091					0.01119586937738859
KTRDGSDYEGW	11	Unmodified	_KTRDGSDYEGW_					0	0	0		nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	MULTI-MSMS	A375_MHC_IP_R1	1	438.9297180175781	3	438.530074	1312.56839	-0.034136	-1.497E-05	-0.25865	-0.00011342	-0.29278	-0.00012839	438.52993241333706	28.608	0.45544	28.608	28.39	28.845	0					19	8	3	0	0	0	0.18643	1	8840	8840		38.559	29.807	1	6221500			27627	1929	19702	19865	27092	27092					-0.07538774580916652
KTRDGSDYEGW	11	Unmodified	_KTRDGSDYEGW_					0	0	0		nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	MULTI-MSMS	A375_MHC_IP_R2	2	438.9300537109375	3	438.530074	1312.56839	-0.38995	-0.00017101	-0.041972	-1.8406E-05	-0.43193	-0.00018941	438.52997550263484	27.938	0.55823	28.617	28.401	28.96	0.67857					20	10	3	0	0	0	0.18643	1	9615	9615		38.559	29.315	1	6099300			27628	1929	19702	19865	27093	27093					-0.07538774580916652
KTRIIDVVY	9	Unmodified	_KTRIIDVVY_					0	0	0		ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-MSMS	A375_MHC_IP_R1	1	369.9573059082031	3	369.557125	1105.64954	0.11479	4.2422E-05	0.44669	0.00016508	0.56148	0.0002075	369.55726015930856	52.971	1.0152	52.971	52.336	53.352	0					43	19	4	0	0	0	0.51106	1	18830	18830		13.615	2.8154	1	30849000			27629	5337	19703	19866	27094	27094					0.10094577919812764
KTRIIDVVY	9	Unmodified	_KTRIIDVVY_					0	0	0		ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-MSMS	A375_MHC_IP_R2	2	369.95703125	3	369.557125	1105.64954	-0.032837	-1.2135E-05	0.10743	3.9702E-05	0.074593	2.7566E-05	369.55715016498243	52.03	1.3709	52.783	52.169	53.54	0.75225					61	26	4	0	0	0	0.11629	1	19565	19565		43.982	23.567	1	25195000			27630	5337	19703	19866	27095	27095					0.10094577919812764
KTRILTLLH	9	Unmodified	_KTRILTLLH_					0	0	0			REV__ENST00000494016.1_1_11:61172069-61173437:-|nuORF	REV__ENST00000494016.1_1_11:61172069-61173437:-|nuORF	MSMS	A375_MHC_IP_R2	2	365.6086120605469	3	365.572998	1093.69716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.935	1	31.654	31.154	32.154	0.71857								0	0	0	0.15486	1	10907	10907		13.615	2.097	1		+		27631	25428	19704	19867	27096	27096					0.15406276910653105
KTRKMEVGF	9	Unmodified	_KTRKMEVGF_					0	0	0		ENSG00000182095|ENST00000430969|TNRC18;nc|ENSG00000182095|O15417-2|TNRC18	ENSG00000182095|ENST00000430969|TNRC18;nc|ENSG00000182095|O15417-2|TNRC18	ENSG00000182095|ENST00000430969|TNRC18	MULTI-MSMS	A375_MHC_IP_R1	1	366.2709655761719	3	365.870826	1094.59065	0.10833	3.9637E-05	0.33279	0.00012176	0.44112	0.00016139	365.87095036429804	24.523	0.50581	24.523	24.397	24.903	0					11	9	2	0	0	0	0.39657	2	7019	6952;7019		24.882	24.882	1	7212900			27632	8375;14801	19705	19868	27097;27098	27098					0.04713778353811904
KTRKMEVGF	9	Unmodified	_KTRKMEVGF_					0	0	0		ENSG00000182095|ENST00000430969|TNRC18;nc|ENSG00000182095|O15417-2|TNRC18	ENSG00000182095|ENST00000430969|TNRC18;nc|ENSG00000182095|O15417-2|TNRC18	ENSG00000182095|ENST00000430969|TNRC18	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	365.870826	1094.59065	-0.19461	-7.1201E-05	0.22089	8.0819E-05	0.026289	9.6182E-06	365.8708181055263	23.784	0.4077	24.414	24.129	24.537	0.63014	-0.054292	-9.2881E-05	NaN	24.882	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6083500			27633	8375;14801	19705	19868							0.04713778353811904
KTRKRRRKRKK	11	Unmodified	_KTRKRRRKRKK_					0	0	0		ENST00000308478.9_1_7:110731416-110762496:+|nuORF	ENST00000308478.9_1_7:110731416-110762496:+|nuORF	ENST00000308478.9_1_7:110731416-110762496:+|nuORF	MSMS	A375_MHC_IP_R2	2	771.4522705078125	2	771.026583	1540.03861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.78	1	106.54	106.04	107.04	0.75977								0	0	0	0.1636	1	39999	39999		0	0	1				27634	10599	19706	19869	27099	27099					0.2901956272407915
KTRKRRRKRKK	11	Unmodified	_KTRKRRRKRKK_					0	0	0		ENST00000308478.9_1_7:110731416-110762496:+|nuORF	ENST00000308478.9_1_7:110731416-110762496:+|nuORF	ENST00000308478.9_1_7:110731416-110762496:+|nuORF	MSMS	A375_MHC_IP_R2	2	770.666015625	2	771.026583	1540.03861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.86	1	112.58	112.08	113.08	0.72458								0	0	0	0.1636	1	42170	42170		0	0	1				27635	10599	19706	19869	27100	27100					0.2901956272407915
KTRLINQVL	9	Unmodified	_KTRLINQVL_					0	0	0		ENSG00000153130|ENST00000608372|SCOC;nc|ENSG00000153130|Q9UIL1-3|SCOC;nc|ENSG00000153130|Q9UIL1-2|SCOC;nc|ENSG00000153130|Q9UIL1|SCOC	ENSG00000153130|ENST00000608372|SCOC	ENSG00000153130|ENST00000608372|SCOC	MULTI-SECPEP	A375_MHC_IP_R2	2	543.2450561523438	2	542.84549	1083.67643	-0.90871	-0.00049329	0.043272	2.349E-05	-0.86544	-0.0004698	542.8455536635826	45.157	0.35296	45.922	45.746	46.099	0.76519					11	6	2	0	0	0	0.72222	1	16888	16888		20.415	2.2682	1	3270000			27636	6008	19707	19870	27101	27101					0.1379368653099391
KTRLVREGF	9	Unmodified	_KTRLVREGF_					0	0	0		nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;ENSG00000083807|ENST00000263093|SLC27A5	nc|ENSG00000083807|Q9Y2P5-2|SLC27A5	nc|ENSG00000083807|Q9Y2P5-2|SLC27A5	MULTI-SECPEP	A375_MHC_IP_R1	1	368.60137939453125	3	369.220735	1104.64038	0.14145	5.2226E-05	-0.043113	-1.5918E-05	0.098337	3.6308E-05	369.2207515282057	24.434	0.40256	24.434	24.245	24.647	0					14	7	3	0	0	0	0.74875	1	6962	6962		7.1017	0	1	3316600			27637	1787	19708	19871	27102	27102					0.09224229354117597
KTRLVREGF	9	Unmodified	_KTRLVREGF_					0	0	0		nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;ENSG00000083807|ENST00000263093|SLC27A5	nc|ENSG00000083807|Q9Y2P5-2|SLC27A5	nc|ENSG00000083807|Q9Y2P5-2|SLC27A5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	369.220735	1104.64038	-0.0087308	-3.2236E-06	-0.30223	-0.00011159	-0.31096	-0.00011481	369.22066244026405	23.677	0.30535	24.308	24.129	24.435	0.63014	-0.063245	-0.00013034	NaN	4.1895	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3512700			27638	1787	19708	19871							0.09224229354117597
KTRLYNII	8	Unmodified	_KTRLYNII_					0	0	0			REV__tr|U7T133|U7T133_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00786PE=4SV=1	REV__tr|U7T133|U7T133_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00786PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	511.2136535644531	2	510.813659	1019.61277	-0.70314	-0.00035918	0.61651	0.00031492	-0.086635	-4.4254E-05	510.8139024245882	39.804	0.35518	39.804	39.592	39.948	0					11	6	2	0	0	0	0.87643	1	13657	13657		13.906	0	1	2849300	+		27639	28692	19709	19872	27103	27103					0.10374326093892705
KTRPGLLNSKL	11	Unmodified	_KTRPGLLNSKL_					0	0	0		ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2;ENST00000564259.1_1_16:48382051-48395504:+|nuORF	ENSG00000102910|ENST00000285737|LONP2	ENSG00000102910|ENST00000285737|LONP2	MULTI-MSMS	A375_MHC_IP_R2	2	409.9903869628906	3	409.590828	1225.75066	-0.2117	-8.6711E-05	-0.14367	-5.8844E-05	-0.35537	-0.00014556	409.590673862837	28.154	0.35486	28.833	28.655	29.01	0.67857					18	6	4	0	0	0	0.17108	1	9710	9710		57.885	23.094	1	7863100			27640	2402	19710	19873	27104	27104					0.1468102962253397
KTRQIISTI	9	Unmodified	_KTRQIISTI_					0	0	0		nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENSG00000079459|ENST00000220584|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF;nc|ENSG00000079459|P37268-4|FDFT1	nc|ENSG00000079459|P37268-3|FDFT1	nc|ENSG00000079459|P37268-3|FDFT1	MULTI-SECPEP	A375_MHC_IP_R1	1	530.65283203125	2	530.329673	1058.64479	-0.57432	-0.00030458	0.15509	8.2251E-05	-0.41923	-0.00022233	530.3295673543315	33.386	0.65861	33.386	32.989	33.648	0					17	12	3	0	0	0	0.47206	1	10965	10965		41.956	11.319	1	2492600			27641	1697	19711	19874	27105	27105					0.11781693777038527
KTRRKRRSV	9	Unmodified	_KTRRKRRSV_					0	0	0		nc|ENSG00000204305|Q15109-8|AGER;nc|ENSG00000204305|Q15109-9|AGER;nc|ENSG00000204305|Q15109-10|AGER	nc|ENSG00000204305|Q15109-8|AGER	nc|ENSG00000204305|Q15109-8|AGER	MSMS	A375_MHC_IP_R2	2	396.6592712402344	3	396.258295	1185.75306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.9	1	140.95	140.45	141.45	0.04216								0	0	0	0.15486	1	55136	55136		0.69767	0.19171	1				27642	14859	19712	19875	27106	27106					0.1676092287082156
KTRTNVPTF	9	Unmodified	_KTRTNVPTF_					0	0	0		nc|ENSG00000116497|Q96BU1-2|S100PBP;ENST00000531123.5_1_1:33290993-33299636:+|nuORF;ENST00000356689.7_1_1:33290993-33299636:+|nuORF;ENSG00000116497|ENST00000373475|S100PBP	nc|ENSG00000116497|Q96BU1-2|S100PBP	nc|ENSG00000116497|Q96BU1-2|S100PBP	MULTI-MSMS	A375_MHC_IP_R1	1	355.6011047363281	3	355.201341	1062.58219	-0.22887	-8.1294E-05	-0.028496	-1.0122E-05	-0.25736	-9.1416E-05	355.2013068699681	27.932	0.70499	27.932	27.634	28.339	0					35	13	4	0	0	0	0.14922	1	8534	8534		32.037	7.1559	1	23299000			27643	3401	19713	19876	27107	27107					0.053405477088290354
KTRTNVPTF	9	Unmodified	_KTRTNVPTF_					0	0	0		nc|ENSG00000116497|Q96BU1-2|S100PBP;ENST00000531123.5_1_1:33290993-33299636:+|nuORF;ENST00000356689.7_1_1:33290993-33299636:+|nuORF;ENSG00000116497|ENST00000373475|S100PBP	nc|ENSG00000116497|Q96BU1-2|S100PBP	nc|ENSG00000116497|Q96BU1-2|S100PBP	MULTI-SECPEP	A375_MHC_IP_R1	1	532.6978759765625	2	532.298373	1062.58219	-0.83809	-0.00044611	0.21942	0.00011679	-0.61867	-0.00032932	532.2984551494077	27.948	0.6044	27.948	27.634	28.238	0					25	11	3	0	0	0	0.14606	1	8548	8548		63.961	27.833	1	9327000			27644	3401	19713	19876	27108	27108					0.053405477088290354
KTRTNVPTF	9	Unmodified	_KTRTNVPTF_					0	0	0		nc|ENSG00000116497|Q96BU1-2|S100PBP;ENST00000531123.5_1_1:33290993-33299636:+|nuORF;ENST00000356689.7_1_1:33290993-33299636:+|nuORF;ENSG00000116497|ENST00000373475|S100PBP	nc|ENSG00000116497|Q96BU1-2|S100PBP	nc|ENSG00000116497|Q96BU1-2|S100PBP	MULTI-MSMS	A375_MHC_IP_R2	2	532.6980590820312	2	532.298373	1062.58219	-0.65772	-0.0003501	-0.056454	-3.005E-05	-0.71417	-0.00038015	532.2983126675136	27.247	0.4591	27.926	27.69	28.149	0.67857					18	8	3	0	0	0	0.13845	1	9293	9293		43.772	7.6454	1	9073400			27645	3401	19713	19876	27109	27109					0.053405477088290354
KTRTNVPTF	9	Unmodified	_KTRTNVPTF_					0	0	0		nc|ENSG00000116497|Q96BU1-2|S100PBP;ENST00000531123.5_1_1:33290993-33299636:+|nuORF;ENST00000356689.7_1_1:33290993-33299636:+|nuORF;ENSG00000116497|ENST00000373475|S100PBP	nc|ENSG00000116497|Q96BU1-2|S100PBP	nc|ENSG00000116497|Q96BU1-2|S100PBP	MULTI-SECPEP	A375_MHC_IP_R2	2	355.6012878417969	3	355.201341	1062.58219	-0.18014	-6.3985E-05	-0.071706	-2.547E-05	-0.25184	-8.9455E-05	355.20128858872204	27.241	0.76643	27.92	27.484	28.251	0.67857					29	14	3	0	0	0	0.38578	1	9269	9269		32.037	1.334	1	28199000			27646	3401	19713	19876	27110	27110					0.053405477088290354
KTRWIIEKY	9	Unmodified	_KTRWIIEKY_					0	0	0		ENSG00000162601|ENST00000472487|MYSM1;nc|ENSG00000162601|Q5VVJ2-2|MYSM1;nc|ENSG00000162601|Q5VVJ2-3|MYSM1	ENSG00000162601|ENST00000472487|MYSM1	ENSG00000162601|ENST00000472487|MYSM1	MULTI-SECPEP	A375_MHC_IP_R1	1	413.3081970214844	3	412.908157	1235.70264	0.058972	2.435E-05	0.017082	7.0533E-06	0.076054	3.1403E-05	412.90821257689345	37.921	0.50842	37.921	37.71	38.218	0					23	9	4	0	0	0	0.10502	1	12809	12809		77.049	46.617	1	10250000			27647	6557	19714	19877	27111	27111					0.09421955702464402
KTRWIIEKY	9	Unmodified	_KTRWIIEKY_					0	0	0		ENSG00000162601|ENST00000472487|MYSM1;nc|ENSG00000162601|Q5VVJ2-2|MYSM1;nc|ENSG00000162601|Q5VVJ2-3|MYSM1	ENSG00000162601|ENST00000472487|MYSM1	ENSG00000162601|ENST00000472487|MYSM1	MULTI-SECPEP	A375_MHC_IP_R2	2	413.3079833984375	3	412.908157	1235.70264	-0.6097	-0.00025175	0.57395	0.00023699	-0.035747	-1.476E-05	412.9083382003411	36.919	0.55836	37.69	37.41	37.968	0.7709					25	10	4	0	0	0	0.059502	1	13478	13478		80.896	44.501	1	10138000			27648	6557	19714	19877	27112	27112					0.09421955702464402
KTRYIFDLF	9	Unmodified	_KTRYIFDLF_					0	0	0		ENST00000471813.1_1_7:99008715-99013888:+|nuORF;ENST00000466798.1_1_7:99013792-99015269:+|nuORF;ENSG00000106245|ENST00000222969|BUD31;nc|ENSG00000106245|P41223-2|BUD31	ENST00000471813.1_1_7:99008715-99013888:+|nuORF	ENST00000471813.1_1_7:99008715-99013888:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	401.95703125	3	401.557125	1201.64954	-0.28432	-0.00011417	0.54455	0.00021867	0.26023	0.0001045	401.55734184219017	102.69	0.50645	102.69	102.4	102.91	0					22	9	3	0	0	0	0.50355	1	37723	37723		19.626	3.8873	1	3101500			27649	2675	19715	19878	27113	27113					0.05678577919775307
KTRYIFDLF	9	Unmodified	_KTRYIFDLF_					0	0	0		ENST00000471813.1_1_7:99008715-99013888:+|nuORF;ENST00000466798.1_1_7:99013792-99015269:+|nuORF;ENSG00000106245|ENST00000222969|BUD31;nc|ENSG00000106245|P41223-2|BUD31	ENST00000471813.1_1_7:99008715-99013888:+|nuORF	ENST00000471813.1_1_7:99008715-99013888:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	602.2315673828125	2	601.832049	1201.64954	-0.32194	-0.00019375	0.58371	0.0003513	0.26177	0.00015754	601.8321653271177	102.68	0.40558	102.68	102.45	102.86	0					12	7	2	0	0	0	0.5212	1	37732	37732		32.786	3.7041	1	2431400			27650	2675	19715	19878	27114	27114					0.05678577919775307
KTRYIFDLF	9	Unmodified	_KTRYIFDLF_					0	0	0		ENST00000471813.1_1_7:99008715-99013888:+|nuORF;ENST00000466798.1_1_7:99013792-99015269:+|nuORF;ENSG00000106245|ENST00000222969|BUD31;nc|ENSG00000106245|P41223-2|BUD31	ENST00000471813.1_1_7:99008715-99013888:+|nuORF	ENST00000471813.1_1_7:99008715-99013888:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	401.9572448730469	3	401.557125	1201.64954	0.052441	2.1058E-05	-0.01119	-4.4933E-06	0.041251	1.6565E-05	401.55707843307925	101.78	0.50957	102.54	102.21	102.72	0.76428					19	9	3	0	0	0	0.65637	1	38533	38533		10.899	0	1	2720500			27651	2675	19715	19878	27115	27115					0.05678577919775307
KTRYIFDLF	9	Unmodified	_KTRYIFDLF_					0	0	0		ENST00000471813.1_1_7:99008715-99013888:+|nuORF;ENST00000466798.1_1_7:99013792-99015269:+|nuORF;ENSG00000106245|ENST00000222969|BUD31;nc|ENSG00000106245|P41223-2|BUD31	ENST00000471813.1_1_7:99008715-99013888:+|nuORF	ENST00000471813.1_1_7:99008715-99013888:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	602.2317504882812	2	601.832049	1201.64954	-0.41748	-0.00025125	-0.5985	-0.0003602	-1.016	-0.00061145	601.8318077303226	101.71	0.45828	102.48	102.16	102.62	0.76428					12	8	2	0	0	0	0.33243	1	38564	38564		29.841	2.2118	1	1962500			27652	2675	19715	19878	27116	27116					0.05678577919775307
KTSELLVRKW	10	Unmodified	_KTSELLVRKW_					0	0	0		ENSG00000166171|ENST00000370151|DPCD	ENSG00000166171|ENST00000370151|DPCD	ENSG00000166171|ENST00000370151|DPCD	MULTI-MSMS	A375_MHC_IP_R1	1	420.9747009277344	3	420.587195	1258.73976	-0.1929	-8.1133E-05	0.052298	2.1996E-05	-0.14061	-5.9137E-05	420.5871969712938	36.785	0.45464	36.785	36.541	36.996	0					29	8	4	0	0	0	0.5004	1	12382	12382		28.181	17.282	1	15128000			27653	7036	19716	19879	27117	27117					0.12073627248219054
KTSELLVRKW	10	Unmodified	_KTSELLVRKW_					0	0	0		ENSG00000166171|ENST00000370151|DPCD	ENSG00000166171|ENST00000370151|DPCD	ENSG00000166171|ENST00000370151|DPCD	MULTI-MSMS	A375_MHC_IP_R2	2	420.9871520996094	3	420.587195	1258.73976	-0.28227	-0.00011872	0.090615	3.8111E-05	-0.19165	-8.0606E-05	420.5872360527146	35.744	0.50726	36.507	36.183	36.69	0.76338					27	9	4	0	0	0	0.0047246	1	12950	12950		101.12	77.151	1	20364000			27654	7036	19716	19879	27118	27118					0.12073627248219054
KTSERFLF	8	Unmodified	_KTSERFLF_					0	0	0		nc|ENSG00000054983|P54803-5|GALC;nc|ENSG00000054983|P54803-4|GALC;nc|ENSG00000054983|P54803-3|GALC;ENSG00000054983|ENST00000261304|GALC	nc|ENSG00000054983|P54803-5|GALC	nc|ENSG00000054983|P54803-5|GALC	MULTI-SECPEP	A375_MHC_IP_R1	1	514.6820068359375	2	514.282192	1026.54983	-0.54601	-0.0002808	0.34451	0.00017718	-0.2015	-0.00010363	514.2822717522777	50.351	0.40869	50.351	50.204	50.613	0					14	7	2	0	0	0	0.64461	1	17857	17857		38.176	9.094	1	1828500			27655	1265	19717	19880	27119	27119					0.037617603058379245
KTSERFLF	8	Unmodified	_KTSERFLF_					0	0	0		nc|ENSG00000054983|P54803-5|GALC;nc|ENSG00000054983|P54803-4|GALC;nc|ENSG00000054983|P54803-3|GALC;ENSG00000054983|ENST00000261304|GALC	nc|ENSG00000054983|P54803-5|GALC	nc|ENSG00000054983|P54803-5|GALC	MULTI-SECPEP	A375_MHC_IP_R2	2	514.6815795898438	2	514.282192	1026.54983	-1.0229	-0.00052607	0.20901	0.00010749	-0.81391	-0.00041858	514.282151215833	49.432	0.55558	50.19	49.792	50.348	0.75737					17	10	2	0	0	0	0.85138	1	18563	18563		31.268	7.2478	1	1592000			27656	1265	19717	19880	27120	27120					0.037617603058379245
KTSGIINKF	9	Unmodified	_KTSGIINKF_					0	0	0		nc|ENSG00000129071|O95243-5|MBD4;ENSG00000129071|ENST00000429544|MBD4;nc|ENSG00000129071|O95243|MBD4;nc|ENSG00000129071|O95243-3|MBD4	nc|ENSG00000129071|O95243-5|MBD4	nc|ENSG00000129071|O95243-5|MBD4	MULTI-SECPEP	A375_MHC_IP_R1	1	504.69781494140625	2	504.297842	1006.58113	-0.61091	-0.00030808	0.1649	8.3159E-05	-0.44601	-0.00022492	504.29790737522796	32.581	1.0102	32.581	32.231	33.241	0					43	19	4	0	0	0	9.464E-05	1	10501	10501		165.72	105.65	1	37375000			27657	4176	19718	19881	27121	27121					0.07810333339944009
KTSGIINKF	9	Unmodified	_KTSGIINKF_					0	0	0		nc|ENSG00000129071|O95243-5|MBD4;ENSG00000129071|ENST00000429544|MBD4;nc|ENSG00000129071|O95243|MBD4;nc|ENSG00000129071|O95243-3|MBD4	nc|ENSG00000129071|O95243-5|MBD4	nc|ENSG00000129071|O95243-5|MBD4	MULTI-MSMS	A375_MHC_IP_R2	2	504.6979064941406	2	504.297842	1006.58113	-0.69802	-0.00035201	0.99186	0.0005002	0.29385	0.00014819	504.29851751084976	31.694	1.2227	32.431	31.737	32.96	0.73692					49	23	4	0	0	0	0.0020207	1	11186	11186		155.95	77.226	1	47033000			27658	4176	19718	19881	27122	27122					0.07810333339944009
KTSRTFFYW	9	Unmodified	_KTSRTFFYW_					0	0	0		nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA	nc|ENSG00000278540|Q13085|ACACA	nc|ENSG00000278540|Q13085|ACACA	MULTI-MSMS	A375_MHC_IP_R2	2	412.60955810546875	3	412.545108	1234.61349	-0.0032095	-1.3241E-06	-0.07071	-2.9171E-05	-0.073919	-3.0495E-05	412.5450841704195	72.937	0.35661	73.672	73.53	73.887	0.7354					10	6	2	0	0	0	0.65748	1	27720	27720		10.8	0.64894	1	768680			27659	10037	19719	19882	27123	27123					0.00557120742951156
KTSVVVGTW	9	Unmodified	_KTSVVVGTW_					0	0	0		nc|ENSG00000068912|Q96DZ1-2|ERLEC1;nc|ENSG00000068912|Q96DZ1-3|ERLEC1;ENSG00000068912|ENST00000185150|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	MULTI-SECPEP	A375_MHC_IP_R1	1	489.1761169433594	2	488.776742	975.538931	-0.26266	-0.00012838	-0.54398	-0.00026589	-0.80665	-0.00039427	488.77641690756235	55.426	0.61227	55.426	55.126	55.738	0					29	11	3	0	0	0	0.011236	1	19787	19787		106.94	57.007	1	15378000			27660	1469	19720	19883	27124	27124					0.05018357931567152
KTSVVVGTW	9	Unmodified	_KTSVVVGTW_					0	0	0		nc|ENSG00000068912|Q96DZ1-2|ERLEC1;nc|ENSG00000068912|Q96DZ1-3|ERLEC1;ENSG00000068912|ENST00000185150|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	MULTI-SECPEP	A375_MHC_IP_R2	2	489.176025390625	2	488.776742	975.538931	-0.76974	-0.00037623	-0.14157	-6.9198E-05	-0.91131	-0.00044543	488.7766181932136	54.558	0.81226	55.309	54.967	55.779	0.75075					35	15	3	0	0	0	0.013591	1	20534	20534		96.367	46.434	1	16748000			27661	1469	19720	19883	27125	27125					0.05018357931567152
KTTELIRRI	9	Unmodified	_KTTELIRRI_					0	0	0		ENST00000373899.3_1_10:60146421-60154831:+|nuORF;nc|ENSG00000108064|Q00059-2|TFAM;ENSG00000108064|ENST00000487519|TFAM	ENST00000373899.3_1_10:60146421-60154831:+|nuORF	ENST00000373899.3_1_10:60146421-60154831:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	377.6399230957031	3	377.239907	1128.69789	0.12435	4.691E-05	-0.19433	-7.3309E-05	-0.069979	-2.6399E-05	377.23987774884864	26.998	0.653	26.998	26.728	27.381	0					28	12	4	0	0	0	0.038567	1	8097	8097		68.76	13.525	1	23133000			27662	2783	19721	19884	27126	27126					0.13869071559724944
KTTELIRRI	9	Unmodified	_KTTELIRRI_					0	0	0		ENST00000373899.3_1_10:60146421-60154831:+|nuORF;nc|ENSG00000108064|Q00059-2|TFAM;ENSG00000108064|ENST00000487519|TFAM	ENST00000373899.3_1_10:60146421-60154831:+|nuORF	ENST00000373899.3_1_10:60146421-60154831:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	377.6396484375	3	377.239907	1128.69789	-0.2279	-8.5973E-05	-0.16723	-6.3088E-05	-0.39514	-0.00014906	377.23987622606404	26.068	0.66106	26.728	26.5	27.161	0.65992					24	12	2	0	0	0	0.31609	1	8765	8765		29.437	4.4462	1	20080000			27663	2783	19721	19884	27127	27127					0.13869071559724944
KTTELRRLL	9	Unmodified	_KTTELRRLL_					0	0	0			REV__SPTBN5|p.A3043T|1|0.54|ENSG00000137877|chr15:41855640-41855640|C/T|missense_variant	REV__SPTBN5|p.A3043T|1|0.54|ENSG00000137877|chr15:41855640-41855640|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	377.2484130859375	3	377.239907	1128.69789	-0.2279	-8.5973E-05	-0.16723	-6.3088E-05	-0.39514	-0.00014906	377.23987622606404	26.068	0.66106	26.728	26.5	27.161	0.65992					24	12	2	0	0	0	0.3489	1	8802	8802		27.223	0	1	20080000	+		27664	28042	19722	19885	27128	27128					0.13869071559724944
KTTITVSPFY	10	Unmodified	_KTTITVSPFY_					0	0	0		ENST00000406117.6_1_22:44322822-44359208:+|nuORF;nc|ENSG00000100344|Q9NST1-2|PNPLA3;ENSG00000100344|ENST00000216180|PNPLA3	ENST00000406117.6_1_22:44322822-44359208:+|nuORF	ENST00000406117.6_1_22:44322822-44359208:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	578.1898803710938	2	578.816064	1155.61758	0.0323	1.8696E-05	-0.53537	-0.00030988	-0.50307	-0.00029118	578.8156009529494	109.3	0.45815	109.3	109.07	109.52	0					12	8	2	0	0	0	0.85226	1	40146	40146		20.454	16.509	1	877410			27665	2161	19723	19886	27129	27129					0.045991654460067366
KTTKFIKSF	9	Unmodified	_KTTKFIKSF_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;ENST00000469700.1_1_20:47707305-47712721:+|nuORF	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	A375_MHC_IP_R1	1	367.6219787597656	3	367.221853	1098.64373	-0.069144	-2.5391E-05	-0.062372	-2.2904E-05	-0.13152	-4.8296E-05	367.22165223832565	26.466	0.5072	26.466	26.271	26.779	0					28	9	4	0	0	0	0.0091985	2	7888	7888;7980		102.55	56.526	1	11503000			27666	3884	19724	19887	27130;27131	27130					0.09835479408138781
KTTKFIKSF	9	Unmodified	_KTTKFIKSF_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;ENST00000469700.1_1_20:47707305-47712721:+|nuORF	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	A375_MHC_IP_R2	2	367.6216735839844	3	367.221853	1098.64373	-0.29443	-0.00010812	-0.13899	-5.1039E-05	-0.43342	-0.00015916	367.22168602996175	25.559	0.91563	26.219	25.889	26.805	0.65992					34	17	3	0	0	0	0.13603	1	8558	8558		44.207	28.668	1	11448000			27667	3884	19724	19887	27132	27132					0.09835479408138781
KTTLLKQL	8	Unmodified	_KTTLLKQL_					0	0	0		ENSG00000138175|ENST00000260746|ARL3	ENSG00000138175|ENST00000260746|ARL3	ENSG00000138175|ENST00000260746|ARL3	MULTI-SECPEP	A375_MHC_IP_R2	2	472.6690368652344	2	472.810585	943.606617	-0.75768	-0.00035824	0.61329	0.00028997	-0.1444	-6.8273E-05	472.8108324092337	34.649	0.20271	35.412	35.273	35.475	0.76338					5	3	2	0	0	0	0.96873	1	12507	12507		4.897	1.3005	1	789570			27668	4969	19725	19888	27133	27133					0.1325580786236742
KTTLLRNPF	9	Unmodified	_KTTLLRNPF_					0	0	0			REV__nc|ENSG00000020129|Q9UBB6-2|NCDN	REV__nc|ENSG00000020129|Q9UBB6-2|NCDN	MULTI-SECPEP	A375_MHC_IP_R2	2	364.6046447753906	3	363.885353	1088.63423	-0.67723	-0.00024643	2.7958	0.0010174	2.1186	0.00077092	363.88683165505455	37.171	0.30316	37.942	37.665	37.968	0.7709					7	5	2	0	0	0	0.69507	1	13501	13501		13.615	6.9845	1	1238200	+		27669	16261	19726	19889	27134	27134					0.09345711122591638
KTTSLYQKIMD	11	Unmodified	_KTTSLYQKIMD_					0	0	0		ENST00000531837.1_1_11:105929706-105929772:-|nuORF	ENST00000531837.1_1_11:105929706-105929772:-|nuORF	ENST00000531837.1_1_11:105929706-105929772:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	443.67919921875	3	443.235722	1326.68534	-0.15967	-7.077E-05	0.44784	0.0001985	0.28817	0.00012773	443.570585901461	28.789	0.50619	28.789	28.592	29.098	0					16	9	3	0	0	0	0.99548	1	8955	8955		3.5927	0.74939	1	1178200			27670	13180	19727	19890	27135	27135					0.03506247314476241
KTTTIAVEV	9	Unmodified	_KTTTIAVEV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	A375_MHC_IP_R1	1	481.6818542480469	2	481.281857	960.549162	-0.16176	-7.7851E-05	-0.10342	-4.9774E-05	-0.26518	-0.00012762	481.28182463361463	45.662	0.55479	45.662	45.284	45.839	0					17	10	2	0	0	0	0.40377	1	15999	15999		41.956	7.5538	1	3186200			27671	3330	19728	19891	27136	27136					0.06730920866141332
KTTVARLI	8	Unmodified	_KTTVARLI_					0	0	0		ENST00000528098.5_1_11:57182763-57193651:-|nuORF;ENSG00000134802|ENST00000395124|SLC43A3;nc|ENSG00000134802|Q8NBI5-2|SLC43A3;tr|U7T586|U7T586_FUSNUDNApolymeraseIIIsubunitgamma/tauOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaXPE=3SV=1	ENST00000528098.5_1_11:57182763-57193651:-|nuORF	ENST00000528098.5_1_11:57182763-57193651:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	451.6950988769531	2	451.295102	900.575651	-0.29788	-0.00013443	-0.035186	-1.5879E-05	-0.33306	-0.00015031	451.2950234170412	33.004	0.50572	33.004	32.785	33.291	0					22	9	3	0	0	0	0.25204	1	10714	10714		71.922	19.654	1	8566800			27672	4610	19729	19892	27137	27137					0.12138654548141403
KTTVARLI	8	Unmodified	_KTTVARLI_					0	0	0		ENST00000528098.5_1_11:57182763-57193651:-|nuORF;ENSG00000134802|ENST00000395124|SLC43A3;nc|ENSG00000134802|Q8NBI5-2|SLC43A3;tr|U7T586|U7T586_FUSNUDNApolymeraseIIIsubunitgamma/tauOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaXPE=3SV=1	ENST00000528098.5_1_11:57182763-57193651:-|nuORF	ENST00000528098.5_1_11:57182763-57193651:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	451.69488525390625	2	451.295102	900.575651	-0.28739	-0.0001297	0.018419	8.3125E-06	-0.26897	-0.00012139	451.29504545939585	32.092	0.55758	32.829	32.605	33.162	0.73692					23	10	3	0	0	0	0.85715	1	11395	11395		36.127	5.4905	1	8858800			27673	4610	19729	19892	27138	27138					0.12138654548141403
KTVDGPSGKLW	11	Unmodified	_KTVDGPSGKLW_					0	0	0		ENSG00000111640|ENST00000229239|GAPDH;nc|ENSG00000111640|P04406-2|GAPDH;ENST00000466525.1_1_12:6646524-6647333:+|nuORF;ENST00000434621.2_1_7:9655079-9655256:+|nuORF	ENSG00000111640|ENST00000229239|GAPDH	ENSG00000111640|ENST00000229239|GAPDH	MULTI-MSMS	A375_MHC_IP_R1	1	396.9521789550781	3	396.552151	1186.63462	-0.27079	-0.00010738	0.42319	0.00016782	0.1524	6.0434E-05	396.55229641222047	39.95	0.55984	39.95	39.694	40.254	0					24	10	4	0	0	0	0.42581	1	13681	13681		36.955	26.64	1	6893300			27674	3003	19730	19893	27139	27139					0.048770860518061454
KTVDGPSGKLW	11	Unmodified	_KTVDGPSGKLW_					0	0	0		ENSG00000111640|ENST00000229239|GAPDH;nc|ENSG00000111640|P04406-2|GAPDH;ENST00000466525.1_1_12:6646524-6647333:+|nuORF;ENST00000434621.2_1_7:9655079-9655256:+|nuORF	ENSG00000111640|ENST00000229239|GAPDH	ENSG00000111640|ENST00000229239|GAPDH	MULTI-MSMS	A375_MHC_IP_R1	1	594.724365234375	2	594.324588	1186.63462	-0.55501	-0.00032986	0.73154	0.00043477	0.17652	0.00010491	594.3249344347911	39.967	0.50803	39.967	39.643	40.151	0					18	9	3	0	0	0	0.017156	1	13695	13695		102.46	70.158	1	4670900			27675	3003	19730	19893	27140	27140					0.048770860518061454
KTVDGPSGKLW	11	Unmodified	_KTVDGPSGKLW_					0	0	0		ENSG00000111640|ENST00000229239|GAPDH;nc|ENSG00000111640|P04406-2|GAPDH;ENST00000466525.1_1_12:6646524-6647333:+|nuORF;ENST00000434621.2_1_7:9655079-9655256:+|nuORF	ENSG00000111640|ENST00000229239|GAPDH	ENSG00000111640|ENST00000229239|GAPDH	MULTI-SECPEP	A375_MHC_IP_R2	2	396.9519348144531	3	396.552151	1186.63462	-0.28312	-0.00011227	-0.086028	-3.4115E-05	-0.36915	-0.00014639	396.5521519155684	39.114	0.61173	39.888	39.607	40.219	0.77451					17	11	2	0	0	0	0.041198	1	14432	14432		85.417	64.546	1	10408000			27676	3003	19730	19893	27141	27141					0.048770860518061454
KTVDGPSGKLW	11	Unmodified	_KTVDGPSGKLW_					0	0	0		ENSG00000111640|ENST00000229239|GAPDH;nc|ENSG00000111640|P04406-2|GAPDH;ENST00000466525.1_1_12:6646524-6647333:+|nuORF;ENST00000434621.2_1_7:9655079-9655256:+|nuORF	ENSG00000111640|ENST00000229239|GAPDH	ENSG00000111640|ENST00000229239|GAPDH	MULTI-SECPEP	A375_MHC_IP_R2	2	594.7240600585938	2	594.324588	1186.63462	-0.73496	-0.00043681	0.091027	5.41E-05	-0.64394	-0.00038271	594.3246547705129	39.114	0.35852	39.888	39.708	40.067	0.77451					12	6	2	0	0	0	0.39124	1	14435	14435		66.617	48.47	1	6441900			27677	3003	19730	19893	27142	27142					0.048770860518061454
KTVDKFNEW	9	Unmodified	_KTVDKFNEW_					0	0	0		nc|ENSG00000196459|P0DI81-2|TRAPPC2;ENSG00000256060|ENST00000543226|TRAPPC2B;ENSG00000196459|ENST00000380579|TRAPPC2;nc|ENSG00000196459|P0DI81-3|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	MULTI-SECPEP	A375_MHC_IP_R1	1	389.932861328125	3	389.532868	1165.57677	0.16476	6.418E-05	0.30636	0.00011934	0.47112	0.00018352	389.53304422096693	37.736	0.81755	37.736	37.301	38.118	0					28	15	4	0	0	0	0.5212	1	12745	12745		10.899	0	1	7666900			27678	9046	19731	19894	27143	27143					0.000608241263535092
KTVDKFNEW	9	Unmodified	_KTVDKFNEW_					0	0	0		nc|ENSG00000196459|P0DI81-2|TRAPPC2;ENSG00000256060|ENST00000543226|TRAPPC2B;ENSG00000196459|ENST00000380579|TRAPPC2;nc|ENSG00000196459|P0DI81-3|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	MULTI-SECPEP	A375_MHC_IP_R1	1	584.1954345703125	2	583.795663	1165.57677	-0.25714	-0.00015012	0.44282	0.00025852	0.18568	0.0001084	583.7957100352104	37.739	0.66518	37.739	37.402	38.067	0					23	12	3	0	0	0	0.077986	1	12727	12727		81.915	30.5	1	9432400			27679	9046	19731	19894	27144	27144					0.000608241263535092
KTVDKFNEW	9	Unmodified	_KTVDKFNEW_					0	0	0		nc|ENSG00000196459|P0DI81-2|TRAPPC2;ENSG00000256060|ENST00000543226|TRAPPC2B;ENSG00000196459|ENST00000380579|TRAPPC2;nc|ENSG00000196459|P0DI81-3|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	MULTI-MATCH	A375_MHC_IP_R2	2		2	583.795663	1165.57677	-1.0299	-0.00060123	0.98393	0.00057442	-0.045938	-2.6818E-05	583.7960827541314	36.839	0.45584	37.61	37.461	37.917	0.7709	-0.064491	0.00023723	NaN	121.93	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8917500			27680	9046	19731	19894							0.000608241263535092
KTVEDYFCF	9	Unmodified	_KTVEDYFCF_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-SECPEP	A375_MHC_IP_R1	1	576.6578979492188	2	576.257525	1150.5005	-0.13829	-7.9688E-05	-0.54501	-0.00031406	-0.68329	-0.00039375	576.2570078752615	103.2	0.81392	103.2	102.91	103.72	0					22	15	2	0	0	0	0.47674	1	37927	37927		36.506	4.2007	1	1730600			27681	9951	19732	19895	27145	27145					-0.06873315765278676
KTVELVIVADH	11	Unmodified	_KTVELVIVADH_					0	0	0		nc|ENSG00000143537|Q13444-13|ADAM15;nc|ENSG00000143537|Q13444-10|ADAM15;nc|ENSG00000143537|Q13444-9|ADAM15;nc|ENSG00000143537|Q13444-8|ADAM15;nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-7|ADAM15;nc|ENSG00000143537|Q13444-6|ADAM15;nc|ENSG00000143537|Q13444-12|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF;nc|ENSG00000143537|Q13444-5|ADAM15;nc|ENSG00000143537|Q13444-4|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-3|ADAM15;ENSG00000143537|ENST00000356955|ADAM15;ADAM15|p.L451Ffs*14|1|0.35|ENSG00000143537|chr1:155057662-155057663|-/T|frameshift_variant	nc|ENSG00000143537|Q13444-13|ADAM15	nc|ENSG00000143537|Q13444-13|ADAM15	MULTI-MSMS	A375_MHC_IP_R1	1	409.3056335449219	3	408.571322	1222.69214	-0.022229	-9.082E-06	0.26388	0.00010781	0.24165	9.8731E-05	408.5714312943827	51.267	0.65925	51.267	50.966	51.625	0					28	12	3	0	0	0	0.33856	1	18175	18175		29.281	0	1	5953300			27682	5405	19733	19896	27146	27146					0.08969928257374704
KTVGEIKQF	9	Unmodified	_KTVGEIKQF_					0	0	0		ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	MULTI-SECPEP	A375_MHC_IP_R1	1	525.702880859375	2	525.303124	1048.5917	-0.60686	-0.00031879	-0.60055	-0.00031547	-1.2074	-0.00063426	525.303001424276	27.65	0.6057	27.65	27.381	27.987	0					21	11	3	0	0	0	0.13199	1	8432	8432		61.09	33.461	1	4477600			27683	5105	19734	19897	27147	27147					0.06934315994362805
KTVGEIKQF	9	Unmodified	_KTVGEIKQF_					0	0	0		ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	MULTI-SECPEP	A375_MHC_IP_R2	2	525.7028198242188	2	525.303124	1048.5917	-0.64226	-0.00033738	0.13853	7.2769E-05	-0.50373	-0.00026461	525.303261121295	26.969	0.41087	27.629	27.414	27.825	0.65992					13	7	2	0	0	0	0.062502	1	9194	9194		57.249	29.62	1	4331800			27684	5105	19734	19897	27148	27148					0.06934315994362805
KTVIDSQTHY	10	Unmodified	_KTVIDSQTHY_					0	0	0		ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-MSMS	A375_MHC_IP_R1	1	596.751220703125	2	596.303852	1190.59315	-0.6074	-0.00036219	1.666	0.00099342	1.0586	0.00063123	596.3040827895264	24.207	0.25532	24.207	24.092	24.347	0					8	4	3	0	0	0	0.16019	1	6866	6866		53.317	19.214	1	2677700			27685	7089	19735	19898	27149	27149					0.005479052925011274
KTVIDSQTHY	10	Unmodified	_KTVIDSQTHY_					0	0	0		ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-MATCH	A375_MHC_IP_R2	2		2	596.303852	1190.59315	-0.8473	-0.00050525	-0.24474	-0.00014594	-1.092	-0.00065118	596.3032637272336	23.611	0.25399	24.241	24.079	24.333	0.63014	0.01667	-0.00099023	NaN	53.317	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2072400			27686	7089	19735	19898							0.005479052925011274
KTVIEPLKKF	10	Unmodified	_KTVIEPLKKF_					0	0	0		nc|ENSG00000147439|Q9NQY0-2|BIN3;ENSG00000147439|ENST00000276416|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	MULTI-MSMS	A375_MHC_IP_R1	1	401.9884948730469	3	401.588425	1201.74344	-0.34946	-0.00014034	0.32386	0.00013006	-0.025601	-1.0281E-05	401.5885232441715	36.156	0.60903	36.156	35.83	36.439	0					34	11	4	0	0	0	0.007952	1	12040	12040		93.928	67.807	1	35613000			27687	5681	19736	19899	27150	27150					0.1506429702208152
KTVIEPLKKF	10	Unmodified	_KTVIEPLKKF_					0	0	0		nc|ENSG00000147439|Q9NQY0-2|BIN3;ENSG00000147439|ENST00000276416|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	MULTI-MSMS	A375_MHC_IP_R2	2	401.9883728027344	3	401.588425	1201.74344	-0.23731	-9.53E-05	0.10262	4.1212E-05	-0.13469	-5.4089E-05	401.5884329142106	35.108	0.6573	35.871	35.525	36.183	0.76338					40	12	5	0	0	0	0.056415	1	12665	12665		74.094	51.319	1	30835000			27688	5681	19736	19899	27151	27151					0.1506429702208152
KTVILVSHRES	11	Unmodified	_KTVILVSHRES_					0	0	0		tr|U7T2V0|U7T2V0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00468PE=4SV=1	tr|U7T2V0|U7T2V0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00468PE=4SV=1	tr|U7T2V0|U7T2V0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00468PE=4SV=1	MSMS	A375_MHC_IP_R1	1	423.62176513671875	3	423.582221	1267.72483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.6	1	37.6	37.1	38.1	0								0	0	0	0.16232	1	12688	12688		6.6235	1.9075	1				27689	29947	19737	19900	27152	27152					0.10168135380240528
KTVKRWTIV	9	Unmodified	_KTVKRWTIV_					0	0	0			REV__IGFBPL1|p.P195S|1|0.33|ENSG00000137142|chr9:38413341-38413341|G/A|missense_variant	REV__IGFBPL1|p.P195S|1|0.33|ENSG00000137142|chr9:38413341-38413341|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	377.62957763671875	3	377.572998	1129.69716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.627	1	41.401	40.901	41.901	0.77451								0	0	0	0.15486	1	15049	15049		12.175	0	1		+		27690	18988	19738	19901	27153	27153					0.13750276910650427
KTVPERSSF	9	Unmodified	_KTVPERSSF_					0	0	0		ENSG00000157014|ENST00000448281|TATDN2	ENSG00000157014|ENST00000448281|TATDN2	ENSG00000157014|ENST00000448281|TATDN2	MULTI-MSMS	A375_MHC_IP_R1	1	526.181884765625	2	525.782556	1049.55056	-0.59177	-0.00031114	0.069165	3.6366E-05	-0.5226	-0.00027477	525.7824806593107	19.597	0.30521	19.597	19.42	19.725	0					10	5	2	0	0	0	0.31062	1	4926	4926		29.841	3.5724	1	2621900			27691	6223	19739	19902	27154	27154					0.027765549549030766
KTVRHRRGRP	10	Unmodified	_KTVRHRRGRP_					0	0	0			REV__ENST00000413911.1_1_2:191745560-191746172:-|nuORF	REV__ENST00000413911.1_1_2:191745560-191746172:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	632.2872314453125	2	631.886878	1261.7592	-0.9937	-0.0006279	1.0443	0.0006599	0.050643	3.2001E-05	631.8876955214444	145.13	0.55432	145.13	144.82	145.37	0					30	19	2	0	0	0	0.95026	1	55615	55615		0.45834	0	1	455550	+		27692	24498	19740	19903	27155	27155					0.13879441102358214
KTVRHRRGRP	10	Unmodified	_KTVRHRRGRP_					0	0	0			REV__ENST00000413911.1_1_2:191745560-191746172:-|nuORF	REV__ENST00000413911.1_1_2:191745560-191746172:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	631.886878	1261.7592	-0.61409	-0.00038803	0.68124	0.00043047	0.067153	4.2433E-05	632.3885573649643	145.12	0.51952	145.15	144.89	145.41	0.021408	0.0077918	-0.00013575	NaN	0.45834	35	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	277710	+		27693	24498	19740	19903							0.13879441102358214
KTVRYALCTL	10	Unmodified	_KTVRYALCTL_					0	0	0		ABCA4|p.S231T|1|0.25|ENSG00000198691|chr1:94098871-94098871|A/T|missense_variant	ABCA4|p.S231T|1|0.25|ENSG00000198691|chr1:94098871-94098871|A/T|missense_variant	ABCA4|p.S231T|1|0.25|ENSG00000198691|chr1:94098871-94098871|A/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	390.2901611328125	3	389.889998	1166.64816	0.04536	1.7685E-05	-0.079261	-3.0903E-05	-0.033901	-1.3218E-05	389.88994050131754	25.564	1.1673	25.564	25.306	26.474	0					39	22	3	0	0	0	0.65106	1	7493	7493		17.049	0.4827	1	9980000			27694	6	19741	19904	27156	27156					0.07150620559400522
KTVSNDSFFNF	11	Unmodified	_KTVSNDSFFNF_					0	0	0		ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1	ENSG00000187109|ENST00000618691|NAP1L1	ENSG00000187109|ENST00000618691|NAP1L1	MULTI-MSMS	A375_MHC_IP_R2	2	653.7090454101562	2	653.309135	1304.60372	-0.71405	-0.0004665	0.53288	0.00034813	-0.18118	-0.00011836	653.3095221408396	89.825	0.51382	90.557	90.287	90.801	0.7318					22	9	3	0	0	0	0.090348	1	34188	34188		71.708	35.581	1	3203600			27695	8806	19742	19905	27157	27157					-0.036401120530854314
KTVTLFEQY	9	Unmodified	_KTVTLFEQY_					0	0	0		ENST00000441602.5_1_7:92883193-92979232:+|nuORF;nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000471188.5_1_7:92887656-92969983:+|nuORF	ENST00000441602.5_1_7:92883193-92979232:+|nuORF	ENST00000441602.5_1_7:92883193-92979232:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	565.1820678710938	2	564.800414	1127.58628	-0.81288	-0.00045911	0.12558	7.0925E-05	-0.6873	-0.00038819	564.8003756872881	68.202	0.30414	68.202	68.006	68.31	0					10	5	2	0	0	0	0.38134	1	24740	24740		46.022	13.717	1	980770			27696	869	19743	19906	27158	27158					0.02758592411896643
KTVVGGAMF	9	Oxidation (M)	_KTVVGGAM(Oxidation (M))F_		KTVVGGAM(1)F		KTVVGGAM(60)F	0	0	1		ENSG00000131143|ENST00000253452|COX4I1;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000568339.5_1_16:85839106-85839475:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF	ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	MULTI-MSMS	A375_MHC_IP_R1	1	463.6439208984375	2	463.244221	924.473888	-0.15747	-7.2948E-05	0.25822	0.00011962	0.10075	4.667E-05	463.2442322765715	38.602	0.40824	38.602	38.423	38.832	0					12	7	2	0	0	0	0.06083	1	13121	13121		60.074	33.19	1	4862200			27697	4311	19744	19907	27159	27159		224			0.008630401340724347
KTVVGGAMF	9	Oxidation (M)	_KTVVGGAM(Oxidation (M))F_		KTVVGGAM(1)F		KTVVGGAM(60)F	0	0	1		ENSG00000131143|ENST00000253452|COX4I1;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000568339.5_1_16:85839106-85839475:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF	ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	MULTI-MSMS	A375_MHC_IP_R2	2	463.6437072753906	2	463.244221	924.473888	-0.72523	-0.00033596	0.25614	0.00011866	-0.46909	-0.0002173	463.2441932724666	37.78	0.35691	38.554	38.33	38.687	0.77451					14	6	3	0	0	0	0.06083	1	13885	13885		60.074	25.971	1	4207100			27698	4311	19744	19907	27160	27160		224			0.008630401340724347
KTVVGGAMF	9	Unmodified	_KTVVGGAMF_					0	0	0		ENSG00000131143|ENST00000253452|COX4I1;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000568339.5_1_16:85839106-85839475:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF	ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	MULTI-SECPEP	A375_MHC_IP_R2	2	455.6477966308594	2	455.246763	908.478974	-0.4124	-0.00018774	1.0577	0.00048152	0.64531	0.00029378	455.2481251797875	54.641	1.1174	55.391	54.712	55.83	0.75075					46	21	4	0	0	0	0.69381	1	20549	20549		20.415	2.2796	1	3879700			27699	4311	19744	19908	27161	27161					0.021073439966812657
KTVVNKDVF	9	Unmodified	_KTVVNKDVF_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-SECPEP	A375_MHC_IP_R1	1	525.70263671875	2	525.303124	1048.5917	-0.94331	-0.00049552	0.11652	6.1211E-05	-0.82678	-0.00043431	525.3030577980486	29.243	0.40685	29.243	28.996	29.403	0					17	7	3	0	0	0	0.010905	1	9120	9120		151.48	93.758	1	10816000			27700	4332	19745	19909	27162	27162					0.06934315994362805
KTVVNKDVF	9	Unmodified	_KTVVNKDVF_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-SECPEP	A375_MHC_IP_R2	2	525.70263671875	2	525.303124	1048.5917	-0.95017	-0.00049913	-0.20512	-0.00010775	-1.1553	-0.00060687	525.3029426657744	28.459	0.405	29.138	28.858	29.263	0.67857					14	7	3	0	0	0	0.010905	1	9830	9830		128.57	59.468	1	12225000			27701	4332	19745	19909	27163	27163					0.06934315994362805
KTVWTDDEF	9	Unmodified	_KTVWTDDEF_					0	0	0			REV__ENSG00000237765|ENST00000422728|FAM200B	REV__ENSG00000237765|ENST00000422728|FAM200B	MULTI-SECPEP	A375_MHC_IP_R2	2	571.0081787109375	2	570.764029	1139.5135	-0.32864	-0.00018758	-1.9943	-0.0011383	-2.323	-0.0013259	570.7630379500555	30.42	0.55787	31.139	30.809	31.367	0.71857					13	10	2	0	0	0	0.69507	1	10641	10641		9.3831	0	1	1077600	+		27702	22767	19746	19910	27164	27164					-0.05067161381521146
KTWGVYRYF	9	Unmodified	_KTWGVYRYF_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-SECPEP	A375_MHC_IP_R1	1	407.96832275390625	3	407.213469	1218.61858	-0.65812	-0.000268	0.79368	0.0003232	0.13556	5.5203E-05	407.21378431349285	68.101	0.45609	68.101	67.854	68.31	0					12	8	2	0	0	0	0.70759	1	24711	24711		11.518	11.518	1	3196300			27703	1971	19747	19911	27165	27165					0.01801424605559987
KTWGVYRYF	9	Unmodified	_KTWGVYRYF_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-SECPEP	A375_MHC_IP_R2	2	407.6133117675781	3	407.213469	1218.61858	0.0050047	2.038E-06	-0.056431	-2.298E-05	-0.051427	-2.0942E-05	407.2134577821466	67.342	0.45741	68.078	67.85	68.308	0.73631					17	8	3	0	0	0	0.39273	1	25521	25521		24.882	16.936	1	2785400			27704	1971	19747	19911	27166	27166					0.01801424605559987
KTWGVYRYF	9	Unmodified	_KTWGVYRYF_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-SECPEP	A375_MHC_IP_R2	2	610.7149047851562	2	610.316566	1218.61858	-0.49537	-0.00030233	-0.72624	-0.00044324	-1.2216	-0.00074557	610.8184280311178	67.374	0.4048	68.11	67.801	68.205	0.73631					14	7	3	0	0	0	0.65498	1	25510	25510		27.223	14.983	1	1705100			27705	1971	19747	19911	27167	27167					0.01801424605559987
KTWGVYRYF	9	Unmodified	_KTWGVYRYF_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-MATCH	A375_MHC_IP_R1	1		2	610.316566	1218.61858	-0.75025	-0.00045789	0.32314	0.00019721	-0.42711	-0.00026068	610.3169169278536	68.105	0.40522	68.105	67.854	68.26	0	-0.0026531	0.00024069	NaN	27.223	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2136200			27706	1971	19747	19911							0.01801424605559987
KTWKGSIGL	9	Unmodified	_KTWKGSIGL_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	MULTI-MSMS	A375_MHC_IP_R1	1	495.48858642578125	2	495.292559	988.570566	-0.25192	-0.00012477	-0.33478	-0.00016582	-0.5867	-0.00029059	495.2925973419044	40.537	0.65879	40.537	40.304	40.963	0					29	12	3	0	0	0	0.14659	1	13892	13892		42.312	7.9108	1	13093000			27707	7019	19748	19912	27168	27168					0.07582350685515848
KTWKGSIGL	9	Unmodified	_KTWKGSIGL_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	MULTI-MSMS	A375_MHC_IP_R2	2	495.692626953125	2	495.292559	988.570566	-0.50916	-0.00025218	-0.33003	-0.00016346	-0.83919	-0.00041564	495.2926364496387	39.611	0.60895	40.386	40.118	40.727	0.77451					26	11	3	0	0	0	0.0099638	1	14624	14624		121.35	59.988	1	11156000			27708	7019	19748	19912	27169	27169					0.07582350685515848
KTWKLLISE	9	Unmodified	_KTWKLLISE_					0	0	0			REV__ENSG00000159399|ENST00000290573|HK2	REV__ENSG00000159399|ENST00000290573|HK2	MULTI-SECPEP	A375_MHC_IP_R2	2	558.6675415039062	2	559.334424	1116.6543	-0.82889	-0.00046363	-0.38914	-0.00021766	-1.218	-0.00068129	559.3339093703835	41.5	0.45546	42.274	41.946	42.401	0.77451					12	8	2	0	0	0	0.77396	1	15407	15407		3.2813	0	1	1428600	+		27709	20117	19749	19913	27170	27170					0.10063462062566941
KTWPSSHNW	9	Unmodified	_KTWPSSHNW_					0	0	0		ENSG00000143162|ENST00000370509|CREG1	ENSG00000143162|ENST00000370509|CREG1	ENSG00000143162|ENST00000370509|CREG1	MULTI-SECPEP	A375_MHC_IP_R1	1	381.91741943359375	3	381.51744	1141.53049	0.22824	8.7077E-05	0.26353	0.00010054	0.49177	0.00018762	381.5176328148262	31.234	1.2665	31.234	30.553	31.819	0					50	24	3	0	0	0	0.16764	1	9949	9949		17.863	2.906	1	3642300			27710	5352	19750	19914	27171	27171					-0.03461195985073573
KTWPSSHNW	9	Unmodified	_KTWPSSHNW_					0	0	0		ENSG00000143162|ENST00000370509|CREG1	ENSG00000143162|ENST00000370509|CREG1	ENSG00000143162|ENST00000370509|CREG1	MULTI-MSMS	A375_MHC_IP_R2	2	572.229736328125	2	571.772522	1141.53049	-0.33518	-0.00019165	-0.0028258	-1.6157E-06	-0.33801	-0.00019326	571.7724063155993	30.301	0.80927	31.019	30.608	31.417	0.71857					41	15	3	0	0	0	0.0085482	2	10625	10625;10807		128.57	95.787	1	10513000			27711	5352	19750	19914	27172;27173	27172					-0.03461195985073573
KTWPSSHNW	9	Unmodified	_KTWPSSHNW_					0	0	0		ENSG00000143162|ENST00000370509|CREG1	ENSG00000143162|ENST00000370509|CREG1	ENSG00000143162|ENST00000370509|CREG1	MULTI-SECPEP	A375_MHC_IP_R2	2	381.9181213378906	3	381.51744	1141.53049	-0.10218	-3.8982E-05	0.41065	0.00015667	0.30847	0.00011769	381.51774596168764	30.351	1.0612	31.07	30.608	31.669	0.71857					44	20	3	0	0	0	0.16764	1	10615	10615		34.222	19.265	1	5501300			27712	5352	19750	19914	27174	27174					-0.03461195985073573
KTWRPRYF	8	Unmodified	_KTWRPRYF_					0	0	0		nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000537834.5_1_19:40745726-40771198:-|nuORF;ENSG00000142208|ENST00000649815|AKT1	nc|ENSG00000105221|P31751-2|AKT2;ENSG00000142208|ENST00000649815|AKT1	nc|ENSG00000105221|P31751-2|AKT2	MULTI-MSMS	A375_MHC_IP_R1	1	385.61358642578125	3	385.213692	1152.61925	0.43715	0.0001684	-0.26225	-0.00010102	0.1749	6.7372E-05	385.21357045298635	35.446	1.4766	35.446	35.116	36.592	0					70	28	5	0	0	0	0.67331	1	11746	11746		41.84	41.84	1	84412000			27713	2577;5296	19751	19915	27175	27175					0.049042640452626074
KTWRPRYF	8	Unmodified	_KTWRPRYF_					0	0	0		nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000537834.5_1_19:40745726-40771198:-|nuORF;ENSG00000142208|ENST00000649815|AKT1	nc|ENSG00000105221|P31751-2|AKT2;ENSG00000142208|ENST00000649815|AKT1	nc|ENSG00000105221|P31751-2|AKT2	MULTI-MSMS	A375_MHC_IP_R2	2	385.5991516113281	3	385.213692	1152.61925	-0.41311	-0.00015914	0.24036	9.259E-05	-0.17275	-6.6547E-05	385.2137441523986	34.328	1.4688	35.081	34.753	36.222	0.75225					69	28	4	0	0	0	0.74098	2	12440	12303;12440		22.736	22.736	1	74114000			27714	2577;5296	19751	19915	27176;27177	27177					0.049042640452626074
KTWRPRYF	8	Unmodified	_KTWRPRYF_					0	0	0		nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000537834.5_1_19:40745726-40771198:-|nuORF;ENSG00000142208|ENST00000649815|AKT1	nc|ENSG00000105221|P31751-2|AKT2;ENSG00000142208|ENST00000649815|AKT1	nc|ENSG00000105221|P31751-2|AKT2	MULTI-SECPEP	A375_MHC_IP_R2	2	577.7164306640625	2	577.3169	1152.61925	-0.47144	-0.00027217	-0.51316	-0.00029626	-0.98459	-0.00056842	577.3166181524612	34.342	0.45901	35.095	34.853	35.312	0.75225					17	8	3	0	0	0	0.972	1	12389	12389		7.9102	0	1	4190000			27715	2577;5296	19751	19915	27178	27178					0.049042640452626074
KTYDKTVAL	9	Unmodified	_KTYDKTVAL_					0	0	0		nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-2|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENSG00000163636|ENST00000295901|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6	nc|ENSG00000163636|Q15008-3|PSMD6	nc|ENSG00000163636|Q15008-3|PSMD6	MULTI-SECPEP	A375_MHC_IP_R1	1	520.1948852539062	2	519.795132	1037.57571	-0.77039	-0.00040044	0.07827	4.0684E-05	-0.69212	-0.00035976	519.7950930954428	26.946	0.35091	26.946	26.677	27.027	0					12	6	2	0	0	0	0.26374	1	8077	8077		40.725	23.612	1	3023400			27716	6699	19752	19916	27179	27179					0.05842609757473838
KTYFSDVKF	9	Unmodified	_KTYFSDVKF_					0	0	0		ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	MULTI-SECPEP	A375_MHC_IP_R1	1	379.2659606933594	3	378.865847	1133.57571	0.34252	0.00012977	0.19689	7.4595E-05	0.53941	0.00020436	378.865894638255	57.62	0.40678	57.62	57.415	57.822	0					15	7	3	0	0	0	0.74875	1	20700	20700		4.7159	2.0847	1	1910800			27717	3508	19753	19917	27180	27180					0.01426609757481856
KTYFSDVKF	9	Unmodified	_KTYFSDVKF_					0	0	0		ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	MULTI-SECPEP	A375_MHC_IP_R1	1	568.19482421875	2	567.795132	1133.57571	-0.34728	-0.00019719	0.15177	8.6177E-05	-0.19551	-0.00011101	567.795047643516	57.671	0.55936	57.671	57.364	57.923	0					24	10	3	0	0	0	0.021951	1	20670	20670		103.82	57.803	1	8718600			27718	3508	19753	19917	27181	27181					0.01426609757481856
KTYFSDVKF	9	Unmodified	_KTYFSDVKF_					0	0	0		ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	MULTI-MSMS	A375_MHC_IP_R2	2	379.26568603515625	3	378.865847	1133.57571	-0.34273	-0.00012985	0.28338	0.00010736	-0.059357	-2.2488E-05	378.86582816020876	56.785	0.45701	57.535	57.255	57.712	0.75015					13	8	2	0	0	0	0.43945	1	21484	21484		22.775	15.738	1	2959300			27719	3508	19753	19917	27182	27182					0.01426609757481856
KTYFSDVKF	9	Unmodified	_KTYFSDVKF_					0	0	0		ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	MULTI-SECPEP	A375_MHC_IP_R2	2	568.1942138671875	2	567.795132	1133.57571	-0.80835	-0.00045898	-0.2412	-0.00013695	-1.0496	-0.00059593	567.7949446617679	56.785	0.66292	57.535	57.255	57.918	0.75015					25	12	3	0	0	0	0.063333	1	21437	21437		84.522	46.548	1	11493000			27720	3508	19753	19917	27183	27183					0.01426609757481856
KTYGEIFEKF	10	Unmodified	_KTYGEIFEKF_					0	0	0		ENSG00000151366|ENST00000281031|NDUFC2;NDUFC2|p.H116Y|1|0.57|ENSG00000151366|chr11:78070001-78070001|G/A|missense_variant;nc|ENSG00000151366|O95298-2|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	MULTI-MSMS	A375_MHC_IP_R1	1	631.7258911132812	2	631.326796	1260.63904	-0.71858	-0.00045366	0.41089	0.00025941	-0.30769	-0.00019425	631.3270287809898	65.085	0.60983	65.085	64.75	65.36	0					29	11	4	0	0	0	0.011608	1	23524	23524		133.12	79.72	1	9833400			27721	5900	19754	19918	27184	27184					0.019145504747029918
KTYGEIFEKF	10	Unmodified	_KTYGEIFEKF_					0	0	0		ENSG00000151366|ENST00000281031|NDUFC2;NDUFC2|p.H116Y|1|0.57|ENSG00000151366|chr11:78070001-78070001|G/A|missense_variant;nc|ENSG00000151366|O95298-2|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	MULTI-MSMS	A375_MHC_IP_R1	1	421.62030029296875	3	421.22029	1260.63904	-0.049204	-2.0726E-05	0.34616	0.00014581	0.29696	0.00012509	421.2203556234305	65.092	0.55837	65.092	64.75	65.309	0					29	10	4	0	0	0	0.29004	1	23542	23542		40.714	29.083	1	5541900			27722	5900	19754	19918	27185	27185					0.019145504747029918
KTYGEIFEKF	10	Unmodified	_KTYGEIFEKF_					0	0	0		ENSG00000151366|ENST00000281031|NDUFC2;NDUFC2|p.H116Y|1|0.57|ENSG00000151366|chr11:78070001-78070001|G/A|missense_variant;nc|ENSG00000151366|O95298-2|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	MULTI-MSMS	A375_MHC_IP_R2	2	421.6202697753906	3	421.22029	1260.63904	-0.030638	-1.2905E-05	-0.1212	-5.1052E-05	-0.15184	-6.3958E-05	421.2201905797186	64.162	0.66136	64.902	64.547	65.208	0.74022					28	12	3	0	0	0	0.34817	1	24291	24291		37.251	21.712	1	4517800			27723	5900	19754	19918	27186	27186					0.019145504747029918
KTYNEPGSQVF	11	Unmodified	_KTYNEPGSQVF_					0	0	0		nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;PBRM1|p.E1214Rfs*6|1|0.21|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant;PBRM1|p.S1391Efs*5|1|0.7|ENSG00000163939|chr3:52561877-52561884|ATCTCACT/-|frameshift_variant;nc|ENSG00000163939|Q86U86-6|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	MULTI-MSMS	A375_MHC_IP_R1	1	635.7093505859375	2	635.309135	1268.60372	-0.43789	-0.00027819	0.17121	0.00010877	-0.26668	-0.00016942	635.3092298277537	42.941	0.61071	42.941	42.638	43.249	0					35	11	4	0	0	0	0.00021903	1	14896	14896		129.39	55.188	1	13722000			27724	14724	19755	19919	27187	27187					-0.01984112053082754
KTYNEPGSQVF	11	Unmodified	_KTYNEPGSQVF_					0	0	0		nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;PBRM1|p.E1214Rfs*6|1|0.21|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant;PBRM1|p.S1391Efs*5|1|0.7|ENSG00000163939|chr3:52561877-52561884|ATCTCACT/-|frameshift_variant;nc|ENSG00000163939|Q86U86-6|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	MULTI-MSMS	A375_MHC_IP_R2	2	635.7089233398438	2	635.309135	1268.60372	-0.72963	-0.00046354	0.14731	9.359E-05	-0.58231	-0.00036995	635.3092821643102	42.189	0.5616	42.961	42.707	43.268	0.7724					29	10	4	0	0	0	0.00032653	2	15677	15677;15684		119.6	60.234	1	15097000			27725	14724	19755	19919	27188;27189	27188					-0.01984112053082754
KTYNRLHW	8	Unmodified	_KTYNRLHW_					0	0	0			REV__ENSG00000186136|ENST00000334266|TAS2R42	REV__ENSG00000186136|ENST00000334266|TAS2R42	MULTI-SECPEP	A375_MHC_IP_R1	1	558.671630859375	2	559.298707	1116.58286	-0.52057	-0.00029115	-3.2649	-0.0018261	-3.7855	-0.0021172	559.7966692252073	57.88	0.25288	57.88	57.771	58.024	0					5	4	2	0	0	0	0.95424	1	20748	20748		7.9102	0	1	1622600	+		27726	21950	19756	19920	27190	27190					0.02923387148553047
KTYPLTQL	8	Unmodified	_KTYPLTQL_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-MSMS	A375_MHC_IP_R1	1	482.6789855957031	2	482.279118	962.543683	-0.13788	-6.6497E-05	-0.20464	-9.8695E-05	-0.34252	-0.00016519	482.2789560249297	54.09	0.70894	54.09	53.758	54.467	0					36	13	4	0	0	0	0.10985	1	19251	19251		93.166	34.487	1	27946000			27727	5163	19757	19921	27191	27191					0.06091242074330694
KTYPLTQL	8	Unmodified	_KTYPLTQL_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-SECPEP	A375_MHC_IP_R2	2	482.6785888671875	2	482.279118	962.543683	-1.1644	-0.00056157	0.33131	0.00015978	-0.83309	-0.00040178	482.2792465498871	53.179	0.71495	53.93	53.638	54.353	0.75105					38	13	4	0	0	0	0.17654	1	20013	20013		83.429	22.071	1	25224000			27728	5163	19757	19921	27192	27192					0.06091242074330694
KTYPPFVNF	9	Unmodified	_KTYPPFVNF_					0	0	0		nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	MULTI-SECPEP	A375_MHC_IP_R2	2	556.688720703125	2	556.792392	1111.57023	-0.64398	-0.00035856	-1.731	-0.00096381	-2.375	-0.0013224	556.791184773772	86.801	1.0686	87.534	86.998	88.067	0.733					34	20	2	0	0	0	0.5205	1	33015	33015		38.615	23.366	1	3226600			27729	3212	19758	19922	27193	27193					0.01890930965669213
KTYQDIQNTI	10	Unmodified	_KTYQDIQNTI_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-SECPEP	A375_MHC_IP_R1	1	612.7164916992188	2	612.31696	1222.61937	-0.30973	-0.00018965	-0.117	-7.1643E-05	-0.42673	-0.00026129	612.3168021658923	43.964	0.45936	43.964	43.808	44.267	0					18	8	3	0	0	0	0.17899	1	15348	15348		74.2	16.478	1	3217100			27730	8339	19759	19923	27194	27194					0.01696174463972966
KTYQDIQNTI	10	Unmodified	_KTYQDIQNTI_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MATCH	A375_MHC_IP_R2	2		2	612.31696	1222.61937	-0.39397	-0.00024124	-0.2493	-0.00015265	-0.64327	-0.00039389	612.3167737586675	43.326	0.50681	44.099	43.826	44.333	0.7724	0.06728	-4.4687E-05	NaN	121.35	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2704100			27731	8339	19759	19923							0.01696174463972966
KTYQGSYGF	9	Unmodified	_KTYQGSYGF_					0	0	0		nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.N268Ifs*85|1|0.88|ENSG00000141510|chr17:7673817-7673818|-/TCCGTCCCAGTAGATTACCACTA|frameshift_variant;ENSG00000141510|ENST00000269305|TP53;TP53|p.H214Qfs*7|1|0.58|ENSG00000141510|chr17:7674888-7674889|TA/-|frameshift_variant;TP53|p.I195Sfs*52|1|0.5|ENSG00000141510|chr17:7674949-7674949|A/-|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;nc|ENSG00000141510|P04637-6|TP53;nc|ENSG00000141510|P04637-4|TP53;TP53|p.R110P|1|0.76|ENSG00000141510|chr17:7676040-7676040|C/G|missense_variant;ENST00000505014.5_1_17:7578140-7579834:-|nuORF	nc|ENSG00000141510|P04637-2|TP53	nc|ENSG00000141510|P04637-2|TP53	MULTI-MSMS	A375_MHC_IP_R1	1	526.1477661132812	2	525.748182	1049.48181	-0.52123	-0.00027403	-0.093949	-4.9393E-05	-0.61518	-0.00032343	525.7480824249108	40.158	0.66254	40.158	39.896	40.559	0					22	12	2	0	0	0	0.012447	1	13761	13761		93.166	53.209	1	12949000			27732	5248	19760	19924	27195	27195					-0.040951093448029496
KTYQGSYGF	9	Unmodified	_KTYQGSYGF_					0	0	0		nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.N268Ifs*85|1|0.88|ENSG00000141510|chr17:7673817-7673818|-/TCCGTCCCAGTAGATTACCACTA|frameshift_variant;ENSG00000141510|ENST00000269305|TP53;TP53|p.H214Qfs*7|1|0.58|ENSG00000141510|chr17:7674888-7674889|TA/-|frameshift_variant;TP53|p.I195Sfs*52|1|0.5|ENSG00000141510|chr17:7674949-7674949|A/-|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;nc|ENSG00000141510|P04637-6|TP53;nc|ENSG00000141510|P04637-4|TP53;TP53|p.R110P|1|0.76|ENSG00000141510|chr17:7676040-7676040|C/G|missense_variant;ENST00000505014.5_1_17:7578140-7579834:-|nuORF	nc|ENSG00000141510|P04637-2|TP53	nc|ENSG00000141510|P04637-2|TP53	MULTI-MSMS	A375_MHC_IP_R2	2	526.1473388671875	2	525.748182	1049.48181	-0.52903	-0.00027814	-0.23125	-0.00012158	-0.76028	-0.00039972	525.7480027786701	39.427	0.6105	40.202	39.914	40.524	0.77451					27	11	3	0	0	0	0.0023519	1	14545	14545		140.63	94.612	1	20122000			27733	5248	19760	19924	27196	27196					-0.040951093448029496
KTYSLLHQW	9	Unmodified	_KTYSLLHQW_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-SECPEP	A375_MHC_IP_R2	2	588.639404296875	2	588.314023	1174.61349	-0.70093	-0.00041237	0.003077	1.8102E-06	-0.69786	-0.00041056	588.8158302493109	55.027	0.30611	55.778	55.678	55.984	0.75075					8	5	2	0	0	0	0.54263	1	20800	20800		30.703	21.32	1	801580			27734	1000	19761	19925	27197	27197					0.03317120742963198
KTYSLLHQW	9	Unmodified	_KTYSLLHQW_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MATCH	A375_MHC_IP_R1	1		2	588.314023	1174.61349	-0.2014	-0.00011848	-0.51076	-0.00030049	-0.71216	-0.00041897	588.3135948139726	56.011	0.40474	56.011	55.79	56.194	0	0.11672	-0.00013785	NaN	30.703	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1609000			27735	1000	19761	19925							0.03317120742963198
KTYVYPNW	8	Unmodified	_KTYVYPNW_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	MULTI-SECPEP	A375_MHC_IP_R1	1	536.197021484375	2	535.768917	1069.52328	-0.7157	-0.00038345	0.44011	0.0002358	-0.27559	-0.00014765	535.7690774476503	61.56	0.92037	61.56	61.227	62.148	0					25	17	2	0	0	0	0.93817	1	22229	22229		29.082	29.082	1	4030100			27736	4326	19762	19926	27198	27198					-0.00869928585461821
KTYVYPNW	8	Unmodified	_KTYVYPNW_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	MSMS	A375_MHC_IP_R2	2	535.7293701171875	2	535.768917	1069.52328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.757	1	61.502	61.002	62.002	0.74503								0	0	0	0.16876	1	23011	23011		25.399	9.5521	1				27737	4326	19762	19926	27199	27199					-0.00869928585461821
KVADGFKVV	9	Unmodified	_KVADGFKVV_					0	0	0		ENSG00000163655|ENST00000496455|GMPS;nc|ENSG00000163655|P49915-2|GMPS	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	MULTI-SECPEP	A375_MHC_IP_R1	1	482.15631103515625	2	481.78711	961.559667	-0.17819	-8.5851E-05	-0.36316	-0.00017497	-0.54135	-0.00026082	481.786847534664	39.226	0.40776	39.226	39.033	39.441	0					15	7	3	0	0	0	0.090157	1	13389	13389		59.368	22.862	1	4054700			27738	6702	19763	19927	27200	27200					0.07734948311224343
KVADGFKVV	9	Unmodified	_KVADGFKVV_					0	0	0		ENSG00000163655|ENST00000496455|GMPS;nc|ENSG00000163655|P49915-2|GMPS	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	MULTI-SECPEP	A375_MHC_IP_R2	2	482.1867980957031	2	481.78711	961.559667	-0.90591	-0.00043646	0.051813	2.4963E-05	-0.8541	-0.00041149	481.7871119203915	38.283	0.46059	39.057	38.739	39.2	0.77451					13	8	2	0	0	0	0.090157	1	14076	14076		67.838	24.066	1	3950600			27739	6702	19763	19927	27201	27201					0.07734948311224343
KVADGLVKV	9	Unmodified	_KVADGLVKV_					0	0	0		nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3;nc|ENSG00000137100|O75935-3|DCTN3	nc|ENSG00000137100|O75935-2|DCTN3	nc|ENSG00000137100|O75935-2|DCTN3	MULTI-SECPEP	A375_MHC_IP_R1	1	464.690185546875	2	464.794935	927.575317	-0.01086	-5.0479E-06	-1.2557	-0.00058362	-1.2665	-0.00058867	464.7941846723837	35.669	0.51228	35.669	35.369	35.881	0					19	9	3	0	0	0	0.030244	1	11859	11859		78.06	12.825	1	7186500			27740	4859	19764	19928	27202	27202					0.10863234828275381
KVADGLVKV	9	Unmodified	_KVADGLVKV_					0	0	0		nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3;nc|ENSG00000137100|O75935-3|DCTN3	nc|ENSG00000137100|O75935-2|DCTN3	nc|ENSG00000137100|O75935-2|DCTN3	MULTI-MSMS	A375_MHC_IP_R2	2	464.6900939941406	2	464.794935	927.575317	-0.82177	-0.00038195	-0.59823	-0.00027805	-1.42	-0.00066001	464.7943831075764	34.782	0.55804	35.546	35.119	35.677	0.76338					19	10	3	0	0	0	0.14659	1	12534	12534		42.312	0.21792	1	6617900			27741	4859	19764	19928	27203	27203					0.10863234828275381
KVADKIQLI	9	Unmodified	_KVADKIQLI_					0	0	0		nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1;ENSG00000170950|ENST00000304801|PGK2	nc|ENSG00000102144|P00558-2|PGK1	nc|ENSG00000102144|P00558-2|PGK1	MULTI-SECPEP	A375_MHC_IP_R1	1	514.7288818359375	2	514.329142	1026.64373	-0.27638	-0.00014215	-0.3733	-0.000192	-0.64969	-0.00033415	514.3289426896506	49.787	0.50863	49.787	49.49	49.998	0					21	9	3	0	0	0	0.038931	1	17593	17593		100.09	21.941	1	8938800			27742	2359	19765	19929	27204	27204					0.13147479408144136
KVADKIQLI	9	Unmodified	_KVADKIQLI_					0	0	0		nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1;ENSG00000170950|ENST00000304801|PGK2	nc|ENSG00000102144|P00558-2|PGK1	nc|ENSG00000102144|P00558-2|PGK1	MULTI-SECPEP	A375_MHC_IP_R2	2	514.7283325195312	2	514.329142	1026.64373	-0.84836	-0.00043634	0.075614	3.8891E-05	-0.77274	-0.00039745	514.3291348898704	48.751	0.40782	49.508	49.282	49.69	0.75736					23	7	4	0	0	0	0.11887	1	18298	18298		71.708	20.078	1	10898000			27743	2359	19765	19929	27205	27205					0.13147479408144136
KVADPVVTF	9	Unmodified	_KVADPVVTF_					0	0	0		EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant;EFTUD2|p.S944*|1|0.12|ENSG00000108883|chr17:44851362-44851363|CT/-|frameshift_variant;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;nc|ENSG00000108883|Q15029-2|EFTUD2;ENST00000590367.5_1_17:42931463-42950195:-|nuORF;ENST00000590977.5_1_17:42931463-42936567:-|nuORF;ENST00000586276.5_1_17:42931463-42937758:-|nuORF	EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant;ENST00000586276.5_1_17:42931463-42937758:-|nuORF	EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	488.6786193847656	2	488.279118	974.543683	-0.19674	-9.6065E-05	0.30449	0.00014868	0.10775	5.2611E-05	488.2792096666191	63.093	0.66597	63.093	62.711	63.377	0					43	12	5	0	0	0	0.024574	1	22743	22743		79.596	41.421	1	33786000			27744	829;13726	19766	19930	27206	27206					0.05539242074326012
KVADPVVTF	9	Unmodified	_KVADPVVTF_					0	0	0		EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant;EFTUD2|p.S944*|1|0.12|ENSG00000108883|chr17:44851362-44851363|CT/-|frameshift_variant;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;nc|ENSG00000108883|Q15029-2|EFTUD2;ENST00000590367.5_1_17:42931463-42950195:-|nuORF;ENST00000590977.5_1_17:42931463-42936567:-|nuORF;ENST00000586276.5_1_17:42931463-42937758:-|nuORF	EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant;ENST00000586276.5_1_17:42931463-42937758:-|nuORF	EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	488.6937255859375	2	488.279118	974.543683	-0.75367	-0.000368	0.04007	1.9565E-05	-0.7136	-0.00034844	488.27906975738205	62.203	0.96335	62.946	62.521	63.484	0.74263					44	18	4	0	0	0	0.015356	2	23560	23524;23560		89.401	37.132	1	31844000			27745	829;13726	19766	19930	27207;27208	27208					0.05539242074326012
KVADTILFL	9	Unmodified	_KVADTILFL_					0	0	0		ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	MULTI-SECPEP	A375_MHC_IP_R1	1	510.7098083496094	2	510.310418	1018.60628	-0.19848	-0.00010129	-0.092588	-4.7249E-05	-0.29107	-0.00014854	510.3102785881449	108.94	0.76061	108.94	108.61	109.37	0					39	14	4	0	0	0	0.46045	1	39929	39929		17.113	0	1	11717000			27746	7217	19767	19931	27209	27209					0.09772388142516775
KVAELVHFL	9	Unmodified	_KVAELVHFL_					0	0	0		ENSG00000221867|ENST00000370278|MAGEA3;chrX:152698829-152700558|283|12.93|0.02|9.51|+|ENST00000598245|MAGEA3,MAGEA3	ENSG00000221867|ENST00000370278|MAGEA3	ENSG00000221867|ENST00000370278|MAGEA3	MULTI-SECPEP	A375_MHC_IP_R1	1	528.7164916992188	2	528.316035	1054.61752	-0.60448	-0.00031936	0.035462	1.8735E-05	-0.56902	-0.00030062	528.3161686986505	76.997	0.56219	76.997	76.673	77.235	0					22	9	3	0	0	0	0.04395	1	28066	28066		62.573	16.873	1	5009000			27747	521	19768	19932	27210	27210					0.09239210236660256
KVAELVHFL	9	Unmodified	_KVAELVHFL_					0	0	0		ENSG00000221867|ENST00000370278|MAGEA3;chrX:152698829-152700558|283|12.93|0.02|9.51|+|ENST00000598245|MAGEA3,MAGEA3	ENSG00000221867|ENST00000370278|MAGEA3	ENSG00000221867|ENST00000370278|MAGEA3	MULTI-SECPEP	A375_MHC_IP_R2	2	528.7160034179688	2	528.316035	1054.61752	-0.5102	-0.00026955	0.33289	0.00017587	-0.17731	-9.3675E-05	528.3161554036302	75.938	0.50645	76.678	76.436	76.943	0.74052					21	9	3	0	0	0	0.59098	1	28817	28817		21.537	0	1	5081100			27748	521	19768	19932	27211	27211					0.09239210236660256
KVAENKLTKM	10	Unmodified	_KVAENKLTKM_					0	0	0		tr|U7SJ06|U7SJ06_FUSNUPhosphoglucomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02050PE=3SV=1	tr|U7SJ06|U7SJ06_FUSNUPhosphoglucomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02050PE=3SV=1	tr|U7SJ06|U7SJ06_FUSNUPhosphoglucomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02050PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	388.29364013671875	3	387.893519	1160.65873	-0.4946	-0.00019185	0.43256	0.00016779	-0.062041	-2.4065E-05	387.89368791726446	22.521	0.71538	23.151	22.959	23.675	0.63014					23	13	3	0	0	0	0.70312	1	7178	7178		10.899	10.899	1	3288300			27749	29439	19769	19933	27212	27212					0.08482603213792572
KVAEVTKKF	9	Unmodified	_KVAEVTKKF_					0	0	0		ENST00000496907.1_1_1:24133521-24140717:-|nuORF;ENSG00000117305|ENST00000374490|HMGCL	ENST00000496907.1_1_1:24133521-24140717:-|nuORF	ENST00000496907.1_1_1:24133521-24140717:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	351.2729187011719	3	350.54997	1048.62808	-0.34309	-0.00012027	-0.051333	-1.7995E-05	-0.39442	-0.00013827	350.5500034152453	19.293	0.13068	19.293	19.238	19.368	0					6	2	3	0	0	0	0.035228	1	4690	4690		70.496	33.421	1	7193500			27750	3471	19770	19934	27213	27213					0.10571192891075043
KVAIKVGGRYL	11	Unmodified	_KVAIKVGGRYL_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	MULTI-MSMS	A375_MHC_IP_R1	1	402.3239440917969	3	401.923919	1202.74993	-0.12086	-4.8577E-05	0.50924	0.00020467	0.38838	0.0001561	401.9240323892207	38.725	0.35587	38.725	38.526	38.882	0					14	6	3	0	0	0	0.73239	1	13214	13214		6.6235	4.8812	1	2351500			27751	1614	19771	19935	27214	27214					0.15666234973468818
KVAKVEPAV	9	Unmodified	_KVAKVEPAV_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MSMS	A375_MHC_IP_R1	1	471.19451904296875	2	470.794935	939.575317	-0.12927	-6.0859E-05	-0.48949	-0.00023045	-0.61876	-0.00029131	470.79467370441955	21.469	0.30473	21.469	21.301	21.606	0					11	5	3	0	0	0	0.073067	1	5688	5688		55.503	22.717	1	1517300			27752	3998	19772	19936	27215	27215					0.10311234828282068
KVANIILSY	9	Unmodified	_KVANIILSY_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-SECPEP	A375_MHC_IP_R1	1	511.19671630859375	2	510.808042	1019.60153	-0.44593	-0.00022779	-0.56782	-0.00029005	-1.0138	-0.00051783	510.8076277797142	75.15	0.30365	75.15	74.908	75.211	0					9	5	2	0	0	0	0.54812	1	27361	27361		24.991	10.153	1	944850			27753	2486	19773	19937	27216	27216					0.09251503999757915
KVANTILFF	9	Unmodified	_KVANTILFF_					0	0	0		ENSG00000213593|ENST00000278422|TMX2;ENST00000528042.1_1_11:57505416-57505545:+|nuORF;ENST00000525035.5_1_11:57505416-57506194:+|nuORF	ENSG00000213593|ENST00000278422|TMX2	ENSG00000213593|ENST00000278422|TMX2	MULTI-MSMS	A375_MHC_IP_R1	1	527.210205078125	2	526.810585	1051.60662	-0.29055	-0.00015307	-0.38221	-0.00020135	-0.67276	-0.00035442	526.8103154078349	106.75	0.50964	106.75	106.47	106.98	0					15	9	2	0	0	0	0.056914	1	39197	39197		78.149	14.587	1	2192200			27754	9573	19774	19938	27217	27217					0.08287807862393493
KVANTILFF	9	Unmodified	_KVANTILFF_					0	0	0		ENSG00000213593|ENST00000278422|TMX2;ENST00000528042.1_1_11:57505416-57505545:+|nuORF;ENST00000525035.5_1_11:57505416-57506194:+|nuORF	ENSG00000213593|ENST00000278422|TMX2	ENSG00000213593|ENST00000278422|TMX2	MULTI-SECPEP	A375_MHC_IP_R2	2	527.2103881835938	2	526.810585	1051.60662	-0.45068	-0.00023743	0.29978	0.00015793	-0.1509	-7.9498E-05	526.8105737605923	105.65	0.40814	106.41	106.22	106.63	0.75977					17	7	3	0	0	0	0.053904	1	39970	39970		74.929	7.5851	1	1795900			27755	9573	19774	19938	27218	27218					0.08287807862393493
KVAPAPAVV	9	Unmodified	_KVAPAPAVV_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	A375_MHC_IP_R1	1	427.15594482421875	2	426.271096	850.527639	-0.0098888	-4.2153E-06	0.1314	5.6014E-05	0.12152	5.1799E-05	426.27110856925833	35.192	1.4267	35.192	34.861	36.287	0					60	27	4	0	0	0	0.050162	1	11680	11680		64.236	19.829	1	75443000			27756	5729	19775	19939	27219	27219					0.09639580628083877
KVAPAPAVV	9	Unmodified	_KVAPAPAVV_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-SECPEP	A375_MHC_IP_R2	2	426.6707458496094	2	426.271096	850.527639	-0.43763	-0.00018655	0.067527	2.8785E-05	-0.3701	-0.00015776	426.271071165478	34.385	0.96414	35.137	34.853	35.818	0.75225					51	18	4	0	0	0	0.3213	1	12334	12334		37.974	9.4872	1	81589000			27757	5729	19775	19939	27220	27220					0.09639580628083877
KVAQPKEVY	9	Unmodified	_KVAQPKEVY_					0	0	0		nc|ENSG00000197451|Q99729-3|HNRNPAB;nc|ENSG00000197451|Q99729-4|HNRNPAB;nc|ENSG00000197451|Q99729|HNRNPAB;ENSG00000197451|ENST00000358344|HNRNPAB;ENSG00000152795|ENST00000295470|HNRNPDL;nc|ENSG00000152795|O14979-2|HNRNPDL;nc|ENSG00000152795|O14979-3|HNRNPDL	nc|ENSG00000197451|Q99729-3|HNRNPAB;ENSG00000152795|ENST00000295470|HNRNPDL	ENSG00000152795|ENST00000295470|HNRNPDL	MULTI-SECPEP	A375_MHC_IP_R1	1	531.7029418945312	2	531.303124	1060.5917	-0.69181	-0.00036756	0.2216	0.00011774	-0.47021	-0.00024982	531.3032974974269	19.696	0.40699	19.696	19.42	19.827	0					16	7	3	0	0	0	0.31976	1	4972	4972		55.503	33.966	1	2747300			27758	9162;5985	19776	19940	27221	27221					0.06382315994369492
KVAQRRGA	8	Unmodified	_KVAQRRGA_					0	0	0		ENST00000455282.1_1_19:11979684-11979720:+|nuORF	ENST00000455282.1_1_19:11979684-11979720:+|nuORF	ENST00000455282.1_1_19:11979684-11979720:+|nuORF	MSMS	A375_MHC_IP_R1	1	443.6723937988281	2	443.272493	884.530432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.31	1	123.31	122.81	123.81	0								0	0	0	0.16876	1	46069	46069		2.3027	0	1				27759	12115	19777	19941	27222	27222					0.08354848805606707
KVASALEKW	9	Unmodified	_KVASALEKW_					0	0	0		nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	MULTI-SECPEP	A375_MHC_IP_R1	1	516.6974487304688	2	516.297842	1030.58113	-0.73969	-0.0003819	0.07714	3.9827E-05	-0.66255	-0.00034207	516.298012382409	37.983	0.71293	37.983	37.505	38.218	0					33	13	4	0	0	0	0.13093	1	12832	12832		62.869	26.362	1	14194000			27760	971	19778	19942	27223	27223					0.06706333339934645
KVASALEKW	9	Unmodified	_KVASALEKW_					0	0	0		nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	MULTI-SECPEP	A375_MHC_IP_R2	2	516.6974487304688	2	516.297842	1030.58113	-1.4033	-0.00072452	0.51724	0.00026705	-0.88607	-0.00045747	516.2982300037085	36.971	0.76223	37.742	37.258	38.02	0.7709					34	14	3	0	0	0	0.020621	1	13491	13491		108.26	52.759	1	14076000			27761	971	19778	19942	27224	27224					0.06706333339934645
KVASLLHQV	9	Unmodified	_KVASLLHQV_					0	0	0		nc|ENSG00000168884|Q8NFZ5-2|TNIP2;ENSG00000168884|ENST00000315423|TNIP2;ENST00000502256.1_1_4:2743986-2746461:-|nuORF;ENST00000505186.1_1_4:2743986-2747794:-|nuORF	nc|ENSG00000168884|Q8NFZ5-2|TNIP2	nc|ENSG00000168884|Q8NFZ5-2|TNIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	497.69537353515625	2	497.805834	993.597115	-0.68532	-0.00034116	0.62325	0.00031026	-0.062075	-3.0901E-05	497.8061789870853	38.093	0.4059	38.093	37.862	38.268	0					16	7	3	0	0	0	0.47674	1	12891	12891		23.79	3.3362	1	5251900			27762	7353	19779	19943	27225	27225					0.10006039576865078
KVASLLHQV	9	Unmodified	_KVASLLHQV_					0	0	0		nc|ENSG00000168884|Q8NFZ5-2|TNIP2;ENSG00000168884|ENST00000315423|TNIP2;ENST00000502256.1_1_4:2743986-2746461:-|nuORF;ENST00000505186.1_1_4:2743986-2747794:-|nuORF	nc|ENSG00000168884|Q8NFZ5-2|TNIP2	nc|ENSG00000168884|Q8NFZ5-2|TNIP2	MULTI-MATCH	A375_MHC_IP_R2	2		2	497.805834	993.597115	-1.1782	-0.00058652	0.89469	0.00044538	-0.28352	-0.00014114	497.806266778085	37.021	0.40436	37.792	37.564	37.968	0.7709	-0.15077	0.00013638	NaN	23.79	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6605300			27763	7353	19779	19943							0.10006039576865078
KVATHSPVI	9	Unmodified	_KVATHSPVI_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MSMS	A375_MHC_IP_R2	2	476.32794189453125	2	476.284734	950.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.2	1	33.952	33.452	34.452	0.75225								0	0	0	0.14905	1	11874	11874		23.148	7.3012	1		+		27764	18428	19780	19944	27226	27226					0.07766064168458797
KVAVVLLLSKN	11	Unmodified	_KVAVVLLLSKN_					0	0	0		ENST00000527534.1_3_11:125359647-125365795:-|nuORF	ENST00000527534.1_3_11:125359647-125365795:-|nuORF	ENST00000527534.1_3_11:125359647-125365795:-|nuORF	MSMS	A375_MHC_IP_R1	1	592.3932495117188	2	592.392273	1182.76999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.82	1	124.82	124.32	125.32	0								0	0	0	0.1628	1	47165	47165		8.1555	1.9497	1				27765	13103	19781	19945	27227	27227					0.18591985913440112
KVCTLPLPVC	10	Unmodified	_KVCTLPLPVC_					0	0	0		ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	MULTI-SECPEP	A375_MHC_IP_R2	2	358.9657287597656	3	358.201296	1071.58206	-0.21766	-7.7966E-05	0.56545	0.00020254	0.34779	0.00012458	358.20133743515817	27.445	1.3243	28.124	27.433	28.757	0.67857					42	25	2	0	0	0	0.90513	1	9490	9490		10.899	3.7972	1	1630900			27766	9863	19782	19946	27228	27228					0.0491308839298199
KVDEEQMKY	9	Unmodified	_KVDEEQMKY_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-SECPEP	A375_MHC_IP_R1	1	585.6787719726562	2	585.278989	1168.54342	-0.17945	-0.00010503	-0.50512	-0.00029564	-0.68457	-0.00040066	585.2788710208433	23.1	0.35336	23.1	22.873	23.227	0					11	6	2	0	0	0	0.077986	1	6292	6292		81.915	60.378	1	3849200			27767	1690	19783	19947	27229	27229					-0.034105457078339896
KVDEEQMKY	9	Unmodified	_KVDEEQMKY_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	A375_MHC_IP_R2	2	585.6787719726562	2	585.278989	1168.54342	-0.82438	-0.0004825	0.5578	0.00032647	-0.26659	-0.00015603	585.2793038406749	20.86	0.45681	21.47	21.16	21.616	0.6103					12	8	2	0	0	0	0.063448	1	6526	6526		59.052	32.784	1	1673400			27768	1690	19783	19947	27230	27230					-0.034105457078339896
KVDELAHFL	9	Unmodified	_KVDELAHFL_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;chrX:151919037-151923453|150|252.27|0.24|10.04|+|ENST00000431971|MAGEA4,MAGEA4;chrX:151914958-151923453|148|308.46|0.33|9.87|+|ENST00000441865|MAGEA4,MAGEA4;chrX:151913588-151923453|148|306.86|0.32|9.9|+|ENST00000448295|MAGEA4,MAGEA4;chrX:151916320-151923453|148|311.47|0.37|9.72|+|ENST00000425182|MAGEA4,MAGEA4;MAGEA4|p.L137Wfs*14|1|0.86|ENSG00000147381|chrX:151924073-151924073|C/-|frameshift_variant	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-SECPEP	A375_MHC_IP_R1	1	536.6954956054688	2	536.295299	1070.57605	-0.63702	-0.00034163	0.53403	0.0002864	-0.10299	-5.5235E-05	536.2955346325632	70.841	0.5629	70.841	70.648	71.211	0					15	10	2	0	0	0	0.24324	1	25725	25725		45.7	25.246	1	5481800			27769	520	19784	19948	27231	27231					0.04358029477339187
KVDELAHFL	9	Unmodified	_KVDELAHFL_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;chrX:151919037-151923453|150|252.27|0.24|10.04|+|ENST00000431971|MAGEA4,MAGEA4;chrX:151914958-151923453|148|308.46|0.33|9.87|+|ENST00000441865|MAGEA4,MAGEA4;chrX:151913588-151923453|148|306.86|0.32|9.9|+|ENST00000448295|MAGEA4,MAGEA4;chrX:151916320-151923453|148|311.47|0.37|9.72|+|ENST00000425182|MAGEA4,MAGEA4;MAGEA4|p.L137Wfs*14|1|0.86|ENSG00000147381|chrX:151924073-151924073|C/-|frameshift_variant	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-SECPEP	A375_MHC_IP_R2	2	536.6959838867188	2	536.295299	1070.57605	-0.79375	-0.00042569	0.63632	0.00034126	-0.15743	-8.443E-05	536.2954592138094	69.98	0.50888	70.715	70.488	70.997	0.73421					20	9	3	0	0	0	0.090157	1	26515	26515		67.838	35.533	1	5165700			27770	520	19784	19948	27232	27232					0.04358029477339187
KVDEVKSTIKF	11	Unmodified	_KVDEVKSTIKF_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	A375_MHC_IP_R1	1	432.3186340332031	3	431.918611	1292.734	-0.16546	-7.1464E-05	-0.20682	-8.933E-05	-0.37228	-0.00016079	431.91854102923526	33.402	0.40734	33.402	33.19	33.597	0					18	7	3	0	0	0	0.11795	1	10903	10903		66.84	51.302	1	7111100			27771	9318	19785	19949	27233	27233					0.09934483945880856
KVDEVKSTIKF	11	Unmodified	_KVDEVKSTIKF_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	A375_MHC_IP_R2	2	432.3184814453125	3	431.918611	1292.734	-0.28307	-0.00012226	-0.17424	-7.5256E-05	-0.45731	-0.00019752	431.9185882851616	32.554	0.35626	33.291	33.112	33.468	0.73692					17	6	3	0	0	0	0.2949	1	11603	11603		47.139	36.612	1	8515300			27772	9318	19785	19949	27234	27234					0.09934483945880856
KVDPKYWRTFY	11	Unmodified	_KVDPKYWRTFY_					0	0	0			REV__ENST00000466200.1_1_9:111696724-111697970:+|nuORF	REV__ENST00000466200.1_1_9:111696724-111697970:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	501.13995361328125	3	501.597871	1501.77178	-0.81648	-0.00040954	-0.59137	-0.00029663	-1.4079	-0.00070618	501.5977082681894	35.594	0.71055	36.358	36.03	36.741	0.76338					55	13	6	0	0	0	1.0008	1	12891	12891		0.45452	0	1	63016000	+		27773	18067	19786	19950	27235	27235					0.04096994931364861
KVDPRACFRQF	11	Unmodified	_KVDPRACFRQF_					0	0	0		ENSG00000105401|ENST00000222005|CDC37;ENST00000519230.1_1_5:157413535-157414072:-|nuORF	ENSG00000105401|ENST00000222005|CDC37	ENSG00000105401|ENST00000222005|CDC37	MULTI-MSMS	A375_MHC_IP_R2	2	456.6438903808594	3	456.239801	1365.69757	-0.49207	-0.0002245	2.1457	0.00097898	1.6537	0.00075447	456.24221433433513	49.283	1.0147	50.041	49.536	50.551	0.75736					32	19	3	0	0	0	0.57887	1	18505	18505		24.957	4.9702	1	2658700			27774	2601	19787	19951	27236	27236					0.029353285681963825
KVDPRACFRQF	11	Unmodified	_KVDPRACFRQF_					0	0	0		ENSG00000105401|ENST00000222005|CDC37;ENST00000519230.1_1_5:157413535-157414072:-|nuORF	ENSG00000105401|ENST00000222005|CDC37	ENSG00000105401|ENST00000222005|CDC37	MULTI-MATCH	A375_MHC_IP_R1	1		3	456.239801	1365.69757	-0.23845	-0.00010879	0.41756	0.00019051	0.17911	8.1716E-05	456.2401890709993	50.256	0.51196	50.256	49.998	50.51	0	0.10736	-0.00034999	NaN	24.957	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2116800			27775	2601	19787	19951							0.029353285681963825
KVDVKTDKW	9	Unmodified	_KVDVKTDKW_					0	0	0		ENSG00000261857|ENST00000263369|MIA;chr19:40775309-40775537|435|16.92|0.49|5.11|+|ENST00000597784|MIA,MIA-RAB4B	ENSG00000261857|ENST00000263369|MIA	ENSG00000261857|ENST00000263369|MIA	MULTI-MSMS	A375_MHC_IP_R1	1	373.94488525390625	3	373.544996	1117.61316	0.20323	7.5914E-05	0.12508	4.6722E-05	0.3283	0.00012264	373.5450017432758	23.304	0.45876	23.304	23.024	23.483	0					19	8	3	0	0	0	0.0056874	1	6356	6356		139.32	98.596	1	54205000			27776	455	19788	19952	27237	27237					0.05905701023084475
KVDVKTDKW	9	Unmodified	_KVDVKTDKW_					0	0	0		ENSG00000261857|ENST00000263369|MIA;chr19:40775309-40775537|435|16.92|0.49|5.11|+|ENST00000597784|MIA,MIA-RAB4B	ENSG00000261857|ENST00000263369|MIA	ENSG00000261857|ENST00000263369|MIA	MULTI-MSMS	A375_MHC_IP_R1	1	560.213623046875	2	559.813856	1117.61316	-0.6212	-0.00034776	-0.10566	-5.9148E-05	-0.72686	-0.00040691	559.8139133655185	23.304	0.2557	23.304	23.176	23.432	0					7	4	2	0	0	0	0.0097279	1	6385	6385		111.31	73.133	1	4798900			27777	455	19788	19952	27238	27238					0.05905701023084475
KVDVKTDKW	9	Unmodified	_KVDVKTDKW_					0	0	0		ENSG00000261857|ENST00000263369|MIA;chr19:40775309-40775537|435|16.92|0.49|5.11|+|ENST00000597784|MIA,MIA-RAB4B	ENSG00000261857|ENST00000263369|MIA	ENSG00000261857|ENST00000263369|MIA	MULTI-MSMS	A375_MHC_IP_R2	2	373.9448547363281	3	373.544996	1117.61316	0.060928	2.2759E-05	-0.17008	-6.3532E-05	-0.10915	-4.0773E-05	373.54489709076927	21.031	0.91127	21.65	21.017	21.928	0.61932					28	17	2	0	0	0	0.056914	1	6524	6524		64.927	41.126	1	11708000			27778	455	19788	19952	27239	27239					0.05905701023084475
KVDVKTDKW	9	Unmodified	_KVDVKTDKW_					0	0	0		ENSG00000261857|ENST00000263369|MIA;chr19:40775309-40775537|435|16.92|0.49|5.11|+|ENST00000597784|MIA,MIA-RAB4B	ENSG00000261857|ENST00000263369|MIA	ENSG00000261857|ENST00000263369|MIA	MULTI-SECPEP	A375_MHC_IP_R2	2	559.668701171875	2	559.813856	1117.61316	-0.99918	-0.00055935	-0.27876	-0.00015605	-1.2779	-0.00071541	559.81381711797	20.966	0.45683	21.576	21.362	21.819	0.61029					14	8	2	0	0	0	0.656	1	6559	6559		24.882	16.726	1	856210			27779	455	19788	19952	27240	27240					0.05905701023084475
KVDYNRLGY	9	Unmodified	_KVDYNRLGY_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	A375_MHC_IP_R1	1	564.6953125	2	564.29583	1126.57711	-0.60721	-0.00034265	0.15075	8.5068E-05	-0.45646	-0.00025758	564.2957149941204	32.867	0.95898	32.867	32.282	33.241	0					51	18	6	0	0	0	0.001114	1	10660	10660		152.89	106.87	1	25444000			27780	9818	19789	19953	27241	27241					0.018882438462242135
KVDYNRLGY	9	Unmodified	_KVDYNRLGY_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-SECPEP	A375_MHC_IP_R1	1	376.932861328125	3	376.532979	1126.57711	0.1409	5.3054E-05	-0.11905	-4.4827E-05	0.02185	8.2272E-06	376.53291453109165	32.894	0.60505	32.894	32.485	33.09	0					22	11	3	0	0	0	0.16237	1	10662	10662		55.235	41.016	1	11769000			27781	9818	19789	19953	27242	27242					0.018882438462242135
KVDYNRLGY	9	Unmodified	_KVDYNRLGY_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-SECPEP	A375_MHC_IP_R2	2	376.9330749511719	3	376.532979	1126.57711	0.20839	7.8464E-05	-0.00031041	-1.1688E-07	0.20808	7.8348E-05	376.5329357389725	32.209	0.50911	32.945	32.704	33.213	0.73692					26	9	4	0	0	0	0.10535	1	11406	11406		75.571	53.98	1	16154000			27782	9818	19789	19953	27243	27243					0.018882438462242135
KVDYNRLGY	9	Unmodified	_KVDYNRLGY_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-SECPEP	A375_MHC_IP_R2	2	564.6956176757812	2	564.29583	1126.57711	-0.50448	-0.00028467	-0.15264	-8.6132E-05	-0.65711	-0.00037081	564.2956982199455	32.166	0.45794	32.903	32.704	33.162	0.73692					24	8	4	0	0	0	0.011151	1	11407	11407		152.89	94.207	1	21119000			27783	9818	19789	19953	27244	27244					0.018882438462242135
KVEARHIEHIT	11	Unmodified	_KVEARHIEHIT_					0	0	0			REV__ENST00000456360.5_1_Y:23556925-23559248:-|nuORF	REV__ENST00000456360.5_1_Y:23556925-23559248:-|nuORF	MSMS	A375_MHC_IP_R1	1	444.98382568359375	3	444.917604	1331.73098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.89	1	130.89	130.39	131.39	0								0	0	0	0.16258	1	50432	50432		2.4348	0.18206	1		+		27784	24935	19790	19954	27245	27245					0.07838653611747759
KVEKSLPEIKV	11	Unmodified	_KVEKSLPEIKV_					0	0	0			REV__PLA1A|p.P321S|1|0.33|ENSG00000144837|chr3:119619601-119619601|C/T|missense_variant	REV__PLA1A|p.P321S|1|0.33|ENSG00000144837|chr3:119619601-119619601|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	635.792236328125	2	635.39247	1268.77039	-0.61579	-0.00039127	-0.35827	-0.00022764	-0.97407	-0.00061891	635.3922159121167	54.659	0.40628	54.659	54.415	54.822	0					18	7	3	0	0	0	0.99133	1	19506	19506		10.8	3.6978	1	8284700	+		27785	27790	19791	19955	27246	27246					0.1467536084257972
KVERRIWVRVY	11	Unmodified	_KVERRIWVRVY_					0	0	0		nc|ENSG00000021300|Q9UF11-3|PLEKHB1;ENSG00000021300|ENST00000354190|PLEKHB1	nc|ENSG00000021300|Q9UF11-3|PLEKHB1	nc|ENSG00000021300|Q9UF11-3|PLEKHB1	MSMS	A375_MHC_IP_R1	1	501.96197509765625	3	501.96841	1502.8834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.681	1	20.681	20.181	21.181	0								0	0	0	0.1635	1	5343	5343		0.50596	0.34663	1				27786	1061	19792	19956	27247	27247					0.15207474079147687
KVETVSFSL	9	Unmodified	_KVETVSFSL_					0	0	0			REV__ENST00000476518.1_1_6:106649790-106727677:-|nuORF	REV__ENST00000476518.1_1_6:106649790-106727677:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	507.18603515625	2	505.281857	1008.54916	-1.2736	-0.00064352	0.19815	0.00010012	-1.0754	-0.00054339	505.2819415657394	53.117	1.4299	53.868	53.436	54.866	0.75105					68	27	5	0	0	0	0.55818	1	20035	20035		16.942	0	1	131900000	+		27787	25184	19793	19957	27248	27248					0.0452292086615671
KVFDPVPVGV	10	Unmodified	_KVFDPVPVGV_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.R696C|1|0.5|ENSG00000135829|chr1:182876503-182876503|C/T|missense_variant;ENST00000490519.1_1_1:182845328-182845691:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	A375_MHC_IP_R1	1	528.6898193359375	2	528.808042	1055.60153	-0.58831	-0.0003111	-0.073131	-3.8672E-05	-0.66144	-0.00034978	528.8080207767422	81.218	1.9772	81.218	80.795	82.772	0					89	38	4	0	0	0	0.02507	1	29616	29616		110.55	85.153	1	62162000			27788	4716	19794	19958	27249	27249					0.07595503999755238
KVFDPVPVGV	10	Unmodified	_KVFDPVPVGV_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.R696C|1|0.5|ENSG00000135829|chr1:182876503-182876503|C/T|missense_variant;ENST00000490519.1_1_1:182845328-182845691:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	A375_MHC_IP_R2	2	529.2074584960938	2	528.808042	1055.60153	-0.56035	-0.00029632	-0.22418	-0.00011855	-0.78453	-0.00041487	528.8079447898183	80.292	1.5233	81.036	80.607	82.13	0.74474					71	29	5	0	0	0	0.032481	1	30433	30433		93.166	55.192	1	82813000			27789	4716	19794	19958	27250	27250					0.07595503999755238
KVFDVTKGRKF	11	Unmodified	_KVFDVTKGRKF_					0	0	0		nc|ENSG00000101856|O00264-2|PGRMC1;ENSG00000101856|ENST00000217971|PGRMC1	nc|ENSG00000101856|O00264-2|PGRMC1	nc|ENSG00000101856|O00264-2|PGRMC1	MULTI-MSMS	A375_MHC_IP_R2	2	442.6625671386719	3	442.262712	1323.76631	-0.38484	-0.0001702	0.25415	0.0001124	-0.13069	-5.7799E-05	442.26286151704454	27.139	0.25512	27.818	27.69	27.945	0.67857					11	4	3	0	0	0	0.50903	1	9268	9268		30.414	22.127	1	5144400			27790	2329	19795	19959	27251	27251					0.11737316139533505
KVFDVTKGRKF	11	Unmodified	_KVFDVTKGRKF_					0	0	0		nc|ENSG00000101856|O00264-2|PGRMC1;ENSG00000101856|ENST00000217971|PGRMC1	nc|ENSG00000101856|O00264-2|PGRMC1	nc|ENSG00000101856|O00264-2|PGRMC1	MULTI-MATCH	A375_MHC_IP_R1	1		3	442.262712	1323.76631	-0.30404	-0.00013447	0.37846	0.00016738	0.074421	3.2913E-05	442.26279910935926	27.977	0.45315	27.977	27.735	28.188	0	0.079484	9.8157E-05	NaN	30.414	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3194600			27791	2329	19795	19959							0.11737316139533505
KVFERAVQY	9	Unmodified	_KVFERAVQY_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-SECPEP	A375_MHC_IP_R1	1	380.9451904296875	3	380.545108	1138.61349	0.2216	8.4329E-05	-0.33842	-0.00012879	-0.11682	-4.4457E-05	380.544960127943	32.205	0.4593	32.205	32.075	32.535	0					11	8	2	0	0	0	0.55534	1	10406	10406		32.037	14.595	1	9337100			27792	5771	19796	19960	27252	27252					0.04973120742943138
KVFERAVQY	9	Unmodified	_KVFERAVQY_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	A375_MHC_IP_R2	2	380.94482421875	3	380.545108	1138.61349	-0.020264	-7.7115E-06	-0.1499	-5.7043E-05	-0.17016	-6.4755E-05	380.5450283089573	31.366	0.51114	32.085	31.821	32.332	0.71857					14	9	2	0	0	0	0.44183	1	11091	11091		22.658	11.163	1	8709800			27793	5771	19796	19960	27253	27253					0.04973120742943138
KVFERAVQY	9	Unmodified	_KVFERAVQY_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	A375_MHC_IP_R2	2	570.7135009765625	2	570.314023	1138.61349	-0.33632	-0.00019181	0.27221	0.00015524	-0.064109	-3.6562E-05	570.3137424883616	31.377	0.308	32.096	31.923	32.231	0.71857					13	5	4	0	0	0	0.058226	1	11120	11120		66.457	35.82	1	5513500			27794	5771	19796	19960	27254	27254					0.04973120742943138
KVFGGFQVV	9	Unmodified	_KVFGGFQVV_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-SECPEP	A375_MHC_IP_R1	1	490.6658935546875	2	490.781828	979.549102	-0.40992	-0.00020118	-0.39576	-0.00019423	-0.80569	-0.00039542	490.78158714200333	81.014	0.76146	81.014	80.642	81.404	0					27	14	3	0	0	0	0.39388	1	29572	29572		39.957	39.957	1	3408500			27795	3209	19797	19961	27255	27255					0.05850965656804874
KVFGGFQVV	9	Unmodified	_KVFGGFQVV_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-SECPEP	A375_MHC_IP_R2	2	491.1813049316406	2	490.781828	979.549102	-0.5098	-0.0002502	-0.62921	-0.0003088	-1.139	-0.000559	490.7815405524522	80.027	0.70911	80.772	80.505	81.214	0.74474					25	13	3	0	0	0	0.39388	1	30351	30351		39.957	13.616	1	4352800			27796	3209	19797	19961	27256	27256					0.05850965656804874
KVFGNEIKL	9	Unmodified	_KVFGNEIKL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF;ENST00000494618.1_1_2:232322276-232325237:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-SECPEP	A375_MHC_IP_R1	1	524.7130737304688	2	524.313492	1046.61243	-0.58242	-0.00030537	0.0044416	2.3288E-06	-0.57798	-0.00030304	524.3134646285683	52.583	0.55952	52.583	52.387	52.946	0					17	10	2	0	0	0	0.011191	1	18705	18705		121.53	32.58	1	11522000			27797	3266	19798	19962	27257	27257					0.09098906374038052
KVFGNEIKL	9	Unmodified	_KVFGNEIKL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF;ENST00000494618.1_1_2:232322276-232325237:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-SECPEP	A375_MHC_IP_R2	2	524.7130737304688	2	524.313492	1046.61243	-0.76528	-0.00040125	-0.43688	-0.00022906	-1.2022	-0.00063031	524.3131393616524	51.645	0.40646	52.398	52.219	52.626	0.75225					20	7	4	0	0	0	0.038931	1	19434	19434		90.135	23.678	1	15572000			27798	3266	19798	19962	27258	27258					0.09098906374038052
KVFLGRDTY	9	Unmodified	_KVFLGRDTY_					0	0	0		nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;nc|ENSG00000070669|P08243-3|ASNS;ENST00000495255.1_1_7:97493514-97498468:-|nuORF	nc|ENSG00000070669|P08243-2|ASNS	nc|ENSG00000070669|P08243-2|ASNS	MULTI-SECPEP	A375_MHC_IP_R2	2	367.2696533203125	3	366.869591	1097.58694	-0.073746	-2.7055E-05	1.3472	0.00049426	1.2735	0.00046721	366.8697675766957	35.595	0.65956	36.358	36.03	36.69	0.76338					28	12	3	0	0	0	0.63327	1	12917	12917		22.658	4.5117	1	3661800			27799	1496	19799	19963	27259	27259					0.042054318516193234
KVFLRTSL	8	Unmodified	_KVFLRTSL_					0	0	0		TBCCD1|p.S133F|1|0.29|ENSG00000113838|chr3:186558511-186558511|G/A|missense_variant	TBCCD1|p.S133F|1|0.29|ENSG00000113838|chr3:186558511-186558511|G/A|missense_variant	TBCCD1|p.S133F|1|0.29|ENSG00000113838|chr3:186558511-186558511|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	481.65850830078125	2	482.302927	962.591301	-0.84165	-0.00040593	-0.063109	-3.0438E-05	-0.90476	-0.00043637	482.30292154914684	57.871	0.40196	58.62	58.477	58.879	0.74894					11	7	2	0	0	0	0.96266	1	21911	21911		11.64	0.14559	1	974190			27800	29308	19800	19964	27260	27260					0.10850941065177722
KVFNKKRLL	9	Unmodified	_KVFNKKRLL_					0	0	0		ENSG00000204524|ENST00000414468|ZNF805;nc|ENSG00000204524|Q5CZA5-2|ZNF805	ENSG00000204524|ENST00000414468|ZNF805	ENSG00000204524|ENST00000414468|ZNF805	MULTI-SECPEP	A375_MHC_IP_R2	2	383.2587585449219	3	382.588759	1144.74445	-0.39351	-0.00015055	-0.028042	-1.0729E-05	-0.42155	-0.00016128	382.58867629740365	23.524	0.20115	24.155	23.979	24.18	0.63014					6	3	2	0	0	0	0.77948	1	7586	7586		10.151	5.2536	1	1919800			27801	9452	19801	19965	27261	27261					0.17786556181636115
KVFPQSSSW	9	Unmodified	_KVFPQSSSW_					0	0	0		ENST00000475613.6_1_10:79580836-79628876:-|nuORF;nc|ENSG00000151208|Q8TDM6-3|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENSG00000151208|ENST00000372391|DLG5	ENST00000475613.6_1_10:79580836-79628876:-|nuORF	ENST00000475613.6_1_10:79580836-79628876:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	533.6719360351562	2	533.271824	1064.5291	-0.67091	-0.00035778	0.56945	0.00030367	-0.10146	-5.4105E-05	533.2720708361414	53.428	0.76118	53.428	53.048	53.809	0					40	14	4	0	0	0	0.020087	1	19013	19013		83.429	58.029	1	9280200			27802	5886	19802	19966	27262	27262					-0.0005883007381726202
KVFPQSSSW	9	Unmodified	_KVFPQSSSW_					0	0	0		ENST00000475613.6_1_10:79580836-79628876:-|nuORF;nc|ENSG00000151208|Q8TDM6-3|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENSG00000151208|ENST00000372391|DLG5	ENST00000475613.6_1_10:79580836-79628876:-|nuORF	ENST00000475613.6_1_10:79580836-79628876:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	533.6715698242188	2	533.271824	1064.5291	-1.1961	-0.00063783	0.63314	0.00033764	-0.56293	-0.00030019	533.2718598271989	52.58	0.85818	53.332	52.882	53.74	0.75225					40	16	4	0	0	0	0.074405	1	19822	19822		70.332	39.695	1	6455600			27803	5886	19802	19966	27263	27263					-0.0005883007381726202
KVFQDRLLK	9	Unmodified	_KVFQDRLLK_					0	0	0			REV__ENSG00000177138|ENST00000327220|FAM9B	REV__ENSG00000177138|ENST00000327220|FAM9B	MULTI-SECPEP	A375_MHC_IP_R2	2	383.5708312988281	3	382.904636	1145.69208	0.0164	6.2796E-06	-0.44934	-0.00017206	-0.43294	-0.00016578	382.904404766014	43.179	0.55741	43.951	43.724	44.282	0.7724					14	10	2	0	0	0	0.79713	1	16179	16179		3.8763	0	1	2167200	+		27804	21441	19803	19967	27264	27264					0.1250597304801886
KVFSAFITV	9	Unmodified	_KVFSAFITV_					0	0	0		nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	nc|ENSG00000095319|Q5SRE5-2|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-SECPEP	A375_MHC_IP_R1	1	506.6970520019531	2	506.29731	1010.58007	-0.36633	-0.00018547	0.5434	0.00027512	0.17707	8.965E-05	506.2973009505378	96.242	1.3185	96.242	95.565	96.883	0					57	25	4	0	0	0	0.41434	1	35322	35322		26.268	8.1218	1	7302300			27805	2039	19804	19968	27265	27265					0.07520118971024203
KVFSAFITV	9	Unmodified	_KVFSAFITV_					0	0	0		nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	nc|ENSG00000095319|Q5SRE5-2|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-SECPEP	A375_MHC_IP_R2	2	506.69622802734375	2	506.29731	1010.58007	-0.50779	-0.00025709	0.66889	0.00033866	0.16111	8.1568E-05	506.29744911200896	95.285	1.3733	96.035	95.381	96.754	0.75044					62	26	4	0	0	0	0.24324	1	36130	36130		53.833	15.859	1	5942100			27806	2039	19804	19968	27266	27266					0.07520118971024203
KVFYYIPP	8	Unmodified	_KVFYYIPP_					0	0	0		tr|U7SJK1|U7SJK1_FUSNUlipid-A-disaccharidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02082PE=4SV=1	tr|U7SJK1|U7SJK1_FUSNUlipid-A-disaccharidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02082PE=4SV=1	tr|U7SJK1|U7SJK1_FUSNUlipid-A-disaccharidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02082PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	1025.93603515625	1	1026.56588	1025.5586	-0.12233	-0.00012558	2.8129	0.0028876	2.6906	0.0027621	1026.5690569377753	136.33	0.20703	136.33	136.2	136.41	0					6	3	2	0	0	0	0.972	1	52476	52476		2.5775	0.27475	1	2368200			27807	29459	19805	19969	27267	27267					0.04684733942326602
KVFYYIPP	8	Unmodified	_KVFYYIPP_					0	0	0		tr|U7SJK1|U7SJK1_FUSNUlipid-A-disaccharidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02082PE=4SV=1	tr|U7SJK1|U7SJK1_FUSNUlipid-A-disaccharidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02082PE=4SV=1	tr|U7SJK1|U7SJK1_FUSNUlipid-A-disaccharidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02082PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		1	1026.56588	1025.5586	0.19092	0.00019599	4.3102	0.0044247	4.5011	0.0046207	1026.5695637861977	136.18	0.20284	136.29	136.2	136.4	0.11134	-0.018763	0.00086481	NaN	2.5775	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	866850			27808	29459	19805	19969							0.04684733942326602
KVGFFKRQY	9	Unmodified	_KVGFFKRQY_					0	0	0		ENSG00000140678|ENST00000268296|ITGAX	ENSG00000140678|ENST00000268296|ITGAX	ENSG00000140678|ENST00000268296|ITGAX	MULTI-MSMS	A375_MHC_IP_R1	1	391.9335632324219	3	391.557348	1171.65021	-0.086817	-3.3994E-05	0.98069	0.000384	0.89387	0.00035	391.55758935470413	28.983	0.20215	28.983	28.845	29.047	0					6	3	2	0	0	0	0.70411	1	8998	8998		6.6304	0.89852	1	724300			27809	5176	19806	19970	27268	27268					0.07125417359520725
KVGKFYELY	9	Unmodified	_KVGKFYELY_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-SECPEP	A375_MHC_IP_R1	1	574.2132568359375	2	573.813325	1145.6121	-0.15206	-8.7256E-05	0.030292	1.7382E-05	-0.12177	-6.9874E-05	573.8131841468968	53.668	0.61073	53.668	53.352	53.962	0					25	11	3	0	0	0	0.056023	1	19099	19099		66.457	20.436	1	6386600			27810	3365	19807	19971	27269	27269					0.04511486654178043
KVGLALELEA	10	Unmodified	_KVGLALELEA_					0	0	0		nc|ENSG00000165637|P45880-2|VDAC2;ENSG00000165637|ENST00000332211|VDAC2;nc|ENSG00000165637|P45880-1|VDAC2	nc|ENSG00000165637|P45880-2|VDAC2	nc|ENSG00000165637|P45880-2|VDAC2	MULTI-SECPEP	A375_MHC_IP_R1	1	522.2103881835938	2	521.810782	1041.60701	-0.67347	-0.00035142	0.31573	0.00016475	-0.35774	-0.00018667	521.8108439545084	39.973	0.61019	39.973	39.694	40.304	0					21	11	3	0	0	0	0.73104	1	13699	13699		31.268	2.1868	1	11230000			27811	6972	19808	19972	27270	27270					0.0878718279154782
KVGLALELEA	10	Unmodified	_KVGLALELEA_					0	0	0		nc|ENSG00000165637|P45880-2|VDAC2;ENSG00000165637|ENST00000332211|VDAC2;nc|ENSG00000165637|P45880-1|VDAC2	nc|ENSG00000165637|P45880-2|VDAC2	nc|ENSG00000165637|P45880-2|VDAC2	MULTI-SECPEP	A375_MHC_IP_R2	2	522.2105712890625	2	521.810782	1041.60701	-0.83792	-0.00043724	0.17409	9.084E-05	-0.66383	-0.0003464	521.8107696498487	35.292	0.40411	36.056	35.829	36.233	0.76338					17	7	3	0	0	0	0.87043	1	12784	12784		20.415	6.5085	1	6582600			27812	6972	19808	19972	27271	27271					0.0878718279154782
KVGSVVAVGW	10	Unmodified	_KVGSVVAVGW_					0	0	0		ENSG00000168575|ENST00000520262|SLC20A2	ENSG00000168575|ENST00000520262|SLC20A2	ENSG00000168575|ENST00000520262|SLC20A2	MULTI-SECPEP	A375_MHC_IP_R1	1	501.6935729980469	2	501.292559	1000.57057	-0.28122	-0.00014097	0.4063	0.00020368	0.12508	6.2704E-05	501.29303986730713	71.005	1.2283	71.005	70.085	71.313	0					48	23	4	0	0	0	0.58856	1	25771	25771		34.932	8.0484	1	3337900			27813	7323	19809	19973	27272	27272					0.07030350685522535
KVGSVVSV	8	Unmodified	_KVGSVVSV_					0	0	0		ENSG00000144136|ENST00000272542|SLC20A1	ENSG00000144136|ENST00000272542|SLC20A1	ENSG00000144136|ENST00000272542|SLC20A1	MULTI-SECPEP	A375_MHC_IP_R2	2	388.13970947265625	2	387.739628	773.464704	-0.48472	-0.00018795	0.75984	0.00029462	0.27512	0.00010667	387.7399255331185	33.43	0.9155	34.182	33.584	34.5	0.75225					38	17	3	0	0	0	0.1889	1	11973	11973		96.285	31.05	1	13655000			27814	5466	19810	19974	27273	27273					0.06891014840050502
KVGSVVSVGW	10	Unmodified	_KVGSVVSVGW_					0	0	0		ENSG00000144136|ENST00000272542|SLC20A1	ENSG00000144136|ENST00000272542|SLC20A1	ENSG00000144136|ENST00000272542|SLC20A1	MULTI-SECPEP	A375_MHC_IP_R1	1	509.68963623046875	2	509.290017	1016.56548	-0.044993	-2.2914E-05	-0.24644	-0.00012551	-0.29143	-0.00014842	509.28986681425755	69.197	1.3663	69.197	68.769	70.135	0					68	26	4	0	0	0	0.17899	1	25032	25032		65.474	15.541	1	96043000			27815	5466	19811	19975	27274	27274					0.057860468229023354
KVGSVVSVGW	10	Unmodified	_KVGSVVSVGW_					0	0	0		ENSG00000144136|ENST00000272542|SLC20A1	ENSG00000144136|ENST00000272542|SLC20A1	ENSG00000144136|ENST00000272542|SLC20A1	MULTI-SECPEP	A375_MHC_IP_R2	2	509.6648864746094	2	509.290017	1016.56548	-0.63288	-0.00032232	0.13024	6.6328E-05	-0.50264	-0.00025599	509.2900333590044	68.36	1.6231	69.095	68.662	70.285	0.73511					78	31	5	0	0	0	0.0926	1	25884	25884		86.332	51.93	1	87741000			27816	5466	19811	19975	27275	27275					0.057860468229023354
KVIADNVKDW	10	Unmodified	_KVIADNVKDW_					0	0	0		nc|ENSG00000111669|P60174-4|TPI1;ENSG00000111669|ENST00000396705|TPI1;nc|ENSG00000111669|P60174-3|TPI1	nc|ENSG00000111669|P60174-4|TPI1	nc|ENSG00000111669|P60174-4|TPI1	MULTI-MSMS	A375_MHC_IP_R1	1	594.72412109375	2	594.324588	1186.63462	-0.55858	-0.00033198	0.0086768	5.1568E-06	-0.5499	-0.00032682	594.3246995333147	41.111	0.30183	41.111	40.913	41.215	0					13	5	3	0	0	0	0.085178	1	14185	14185		82.445	57.454	1	3112500			27817	3011	19812	19976	27276	27276					0.04877086051783408
KVIADNVKDW	10	Unmodified	_KVIADNVKDW_					0	0	0		nc|ENSG00000111669|P60174-4|TPI1;ENSG00000111669|ENST00000396705|TPI1;nc|ENSG00000111669|P60174-3|TPI1	nc|ENSG00000111669|P60174-4|TPI1	nc|ENSG00000111669|P60174-4|TPI1	MULTI-SECPEP	A375_MHC_IP_R2	2	594.723876953125	2	594.324588	1186.63462	-0.62283	-0.00037016	-0.05399	-3.2087E-05	-0.67682	-0.00040225	594.3245748665709	40.266	0.35474	41.04	40.828	41.183	0.77451					14	6	3	0	0	0	0.67624	1	14931	14931		39.923	29.123	1	2901200			27818	3011	19812	19976	27277	27277					0.04877086051783408
KVIDEIYRV	9	Unmodified	_KVIDEIYRV_					0	0	0		ENSG00000143756|ENST00000366862|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	MULTI-SECPEP	A375_MHC_IP_R1	1	378.97845458984375	3	378.888763	1133.64446	0.46714	0.00017699	-0.082276	-3.1173E-05	0.38487	0.00014582	378.8887146383501	54.39	1.1652	54.39	54.063	55.228	0					47	22	4	0	0	0	0.32966	1	19420	19420		35.612	15.986	1	47566000			27819	5430	19813	19977	27278	27278					0.08298274057165145
KVIDEIYRV	9	Unmodified	_KVIDEIYRV_					0	0	0		ENSG00000143756|ENST00000366862|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	MULTI-SECPEP	A375_MHC_IP_R1	1	568.2291870117188	2	567.829506	1133.64446	-0.22066	-0.00012529	-0.023466	-1.3325E-05	-0.24412	-0.00013862	567.8294531066744	54.388	1.1148	54.388	54.113	55.228	0					53	21	5	0	0	0	0.064803	1	19374	19374		94.909	43.279	1	86563000			27820	5430	19813	19977	27279	27279					0.08298274057165145
KVIDEIYRV	9	Unmodified	_KVIDEIYRV_					0	0	0		ENSG00000143756|ENST00000366862|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	MULTI-SECPEP	A375_MHC_IP_R2	2	379.2889099121094	3	378.888763	1133.64446	-0.44048	-0.00016689	0.28782	0.00010905	-0.15266	-5.784E-05	378.88884160918883	53.472	0.87056	54.223	53.893	54.764	0.75105					44	16	4	0	0	0	0.15736	1	20146	20146		49.742	26.967	1	48154000			27821	5430	19813	19977	27280	27280					0.08298274057165145
KVIDEIYRV	9	Unmodified	_KVIDEIYRV_					0	0	0		ENSG00000143756|ENST00000366862|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	MULTI-SECPEP	A375_MHC_IP_R2	2	567.6830444335938	2	567.829506	1133.64446	-0.90039	-0.00051127	0.22312	0.00012669	-0.67728	-0.00038458	567.8296061497693	53.472	0.8711	54.223	53.944	54.815	0.75105					49	16	4	0	0	0	0.011042	1	20199	20199		147.24	68.513	1	74797000			27822	5430	19813	19977	27281	27281					0.08298274057165145
KVIDTQQKV	9	Unmodified	_KVIDTQQKV_					0	0	0		ENST00000507185.1_1_5:139661015-139682658:-|nuORF;ENSG00000113068|ENST00000261813|PFDN1	ENST00000507185.1_1_5:139661015-139682658:-|nuORF	ENST00000507185.1_1_5:139661015-139682658:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	530.213623046875	2	529.813856	1057.61316	-0.67966	-0.00036009	0.019014	1.0074E-05	-0.66065	-0.00035002	529.8138995145624	19.596	0.66123	19.596	19.368	20.03	0					20	12	3	0	0	0	0.021951	1	4908	4908		84.522	12.6	1	4891200			27823	12861	19814	19978	27282	27282					0.0866570102307378
KVIDYVPGI	9	Unmodified	_KVIDYVPGI_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-SECPEP	A375_MHC_IP_R1	1	502.1476135253906	2	502.294768	1002.57498	-0.48711	-0.00024467	0.040954	2.0571E-05	-0.44616	-0.0002241	502.29475989978255	80.903	1.6217	80.903	80.492	82.113	0					48	31	2	0	0	0	0.05021	1	29627	29627		88.954	24.718	1	78084000			27824	6703	19815	19979	27283	27283					0.07379815108413368
KVIDYVPGI	9	Unmodified	_KVIDYVPGI_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-SECPEP	A375_MHC_IP_R2	2	502.69451904296875	2	502.294768	1002.57498	-0.6034	-0.00030309	-0.19527	-9.8082E-05	-0.79867	-0.00040117	502.2946205745841	80.04	1.015	80.784	80.401	81.416	0.74474					36	19	2	0	0	0	0.28216	1	30327	30327		34.402	13.948	1	82346000			27825	6703	19815	19979	27284	27284					0.07379815108413368
KVIEINPYL	9	Unmodified	_KVIEINPYL_					0	0	0		ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000204264|P28062-2|PSMB8;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000100804|ENST00000361611|PSMB5	ENSG00000204264|ENST00000374882|PSMB8;ENSG00000100804|ENST00000361611|PSMB5	ENSG00000100804|ENST00000361611|PSMB5	MULTI-SECPEP	A375_MHC_IP_R1	1	545.2207641601562	2	544.82115	1087.62775	-0.61666	-0.00033597	0.082245	4.4809E-05	-0.53441	-0.00029116	544.8211025881354	81.197	0.81162	81.197	80.846	81.657	0					45	15	4	0	0	0	0.056023	1	29609	29609		85.642	26.963	1	19045000			27826	2221;9420	19816	19980	27285	27285					0.08743773171227076
KVIEINPYL	9	Unmodified	_KVIEINPYL_					0	0	0		ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000204264|P28062-2|PSMB8;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000100804|ENST00000361611|PSMB5	ENSG00000204264|ENST00000374882|PSMB8;ENSG00000100804|ENST00000361611|PSMB5	ENSG00000100804|ENST00000361611|PSMB5	MULTI-SECPEP	A375_MHC_IP_R2	2	545.2208251953125	2	544.82115	1087.62775	-0.80974	-0.00044117	0.10003	5.4498E-05	-0.70971	-0.00038667	544.8211638367007	80.29	0.96475	81.035	80.607	81.572	0.74474					46	18	4	0	0	0	0.056023	1	30444	30444		85.642	26.963	1	26993000			27827	2221;9420	19816	19980	27286	27286					0.08743773171227076
KVIESFIKA	9	Unmodified	_KVIESFIKA_					0	0	0		RB1|p.L743*|1|0.55|ENSG00000139687|chr13:48465013-48465043|TTGATCAAAGAAGAGGAGTATGATTCTATTA/-|frameshift_variant;RB1|p.L769Ffs*26|1|0.65|ENSG00000139687|chr13:48465088-48465089|-/T|frameshift_variant;RB1|p.L797Yfs*13|1|0.51|ENSG00000139687|chr13:48465268-48465268|T/-|frameshift_variant;ENSG00000139687|ENST00000267163|RB1	RB1|p.L743*|1|0.55|ENSG00000139687|chr13:48465013-48465043|TTGATCAAAGAAGAGGAGTATGATTCTATTA/-|frameshift_variant	RB1|p.L743*|1|0.55|ENSG00000139687|chr13:48465013-48465043|TTGATCAAAGAAGAGGAGTATGATTCTATTA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	518.2156372070312	2	517.815867	1033.61718	-0.63424	-0.00032842	0.15846	8.2054E-05	-0.47578	-0.00024637	517.8160348995792	47.133	0.36274	47.133	46.952	47.315	0					10	6	2	0	0	0	0.43207	1	16575	16575		27.223	2.2323	1	3296500			27828	5102	19817	19981	27287	27287					0.10171790516801593
KVIESSAKGFP	11	Unmodified	_KVIESSAKGFP_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	A375_MHC_IP_R1	1	582.2264404296875	2	581.826963	1161.63937	-0.23992	-0.00013959	-0.38123	-0.00022181	-0.62115	-0.0003614	581.8265740160111	60.694	0.5084	60.694	60.414	60.922	0					21	8	3	0	0	0	0.6385	1	21849	21849		37.075	37.075	1	8461800			27829	1771	19818	19982	27288	27288					0.06501970194563
KVIFRPPKI	9	Unmodified	_KVIFRPPKI_					0	0	0		PCDH20|p.E425K|2|0.2|ENSG00000280165|chr13:61412826-61412826|C/T|missense_variant	PCDH20|p.E425K|2|0.2|ENSG00000280165|chr13:61412826-61412826|C/T|missense_variant	PCDH20|p.E425K|2|0.2|ENSG00000280165|chr13:61412826-61412826|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	366.64501953125	3	366.577972	1096.71209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.949	1	34.949	34.449	35.449	0								0	0	0	0.15486	1	11576	11576		12.241	0.74595	1				27830	15120	19819	19983	27289	27289					0.16759768778638318
KVIFRPPKI	9	Unmodified	_KVIFRPPKI_					0	0	0		PCDH20|p.E425K|2|0.2|ENSG00000280165|chr13:61412826-61412826|C/T|missense_variant	PCDH20|p.E425K|2|0.2|ENSG00000280165|chr13:61412826-61412826|C/T|missense_variant	PCDH20|p.E425K|2|0.2|ENSG00000280165|chr13:61412826-61412826|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	366.61370849609375	3	366.577972	1096.71209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.15	1	35.15	34.65	35.65	0								0	0	0	0.15331	1	11665	11665		16.149	0.90062	1				27831	15120	19819	19983	27290	27290					0.16759768778638318
KVIFRPPKI	9	Unmodified	_KVIFRPPKI_					0	0	0		PCDH20|p.E425K|2|0.2|ENSG00000280165|chr13:61412826-61412826|C/T|missense_variant	PCDH20|p.E425K|2|0.2|ENSG00000280165|chr13:61412826-61412826|C/T|missense_variant	PCDH20|p.E425K|2|0.2|ENSG00000280165|chr13:61412826-61412826|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	366.582275390625	3	366.577972	1096.71209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.567	1	41.567	41.067	42.067	0								0	0	0	0.15486	1	14360	14360		4.897	0.36815	1				27832	15120	19819	19983	27291	27291					0.16759768778638318
KVIGAGKSW	9	Unmodified	_KVIGAGKSW_					0	0	0		ENST00000530120.5_1_1:201453843-201476204:-|nuORF;ENSG00000159176|ENST00000340006|CSRP1;ENST00000527662.5_1_1:201453843-201459740:-|nuORF	ENST00000530120.5_1_1:201453843-201476204:-|nuORF	ENST00000530120.5_1_1:201453843-201476204:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	473.6790466308594	2	473.279452	944.544351	-0.75992	-0.00035965	0.066939	3.1681E-05	-0.69298	-0.00032797	473.27944954487555	26.043	0.55724	26.043	25.866	26.423	0					31	10	4	0	0	0	0.0099638	1	7704	7704		121.35	63.875	1	43649000			27833	6356	19820	19984	27292	27292					0.06986081514037323
KVIGAGKSW	9	Unmodified	_KVIGAGKSW_					0	0	0		ENST00000530120.5_1_1:201453843-201476204:-|nuORF;ENSG00000159176|ENST00000340006|CSRP1;ENST00000527662.5_1_1:201453843-201459740:-|nuORF	ENST00000530120.5_1_1:201453843-201476204:-|nuORF	ENST00000530120.5_1_1:201453843-201476204:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	473.67901611328125	2	473.279452	944.544351	-1.001	-0.00047376	0.041855	1.9809E-05	-0.95916	-0.00045395	473.2794400963766	25.289	0.66259	25.933	25.719	26.382	0.64368					28	12	3	0	0	0	0.0020209	1	8425	8425		143.91	86.438	1	25521000			27834	6356	19820	19984	27293	27293					0.06986081514037323
KVIHEQVNHRW	11	Unmodified	_KVIHEQVNHRW_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	A375_MHC_IP_R1	1	482.99713134765625	3	482.596865	1444.76877	-0.43595	-0.00021039	0.084402	4.0732E-05	-0.35155	-0.00016966	482.5969694269785	19.546	0.66123	19.546	19.368	20.03	0					22	12	2	0	0	0	0.53677	1	4979	4979		18.853	17.638	1	3276700			27835	4347	19821	19985	27294	27294					0.06417164597201008
KVIHEQVNHRW	11	Unmodified	_KVIHEQVNHRW_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	A375_MHC_IP_R1	1	362.95684814453125	4	362.199468	1444.76877	0.075903	2.7492E-05	-0.14628	-5.2982E-05	-0.070375	-2.549E-05	362.19943382909963	19.603	0.96397	19.603	19.268	20.232	0					53	18	4	0	0	0	0.73189	1	5077	5077		3.5927	0.96144	1	8171100			27836	4347	19821	19985	27295	27295					0.06417164597201008
KVIHEQVNHRW	11	Unmodified	_KVIHEQVNHRW_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-SECPEP	A375_MHC_IP_R2	2	362.6131896972656	4	362.199468	1444.76877	-0.41148	-0.00014904	0.073189	2.6509E-05	-0.3383	-0.00012253	362.1993606502077	18.905	0.16035	19.508	19.423	19.583	0.60308					11	4	3	0	0	0	0.83878	1	5651	5651		27.129	24.876	1	33022000			27837	4347	19821	19985	27296	27296					0.06417164597201008
KVIKKKTRVCI	11	Unmodified	_KVIKKKTRVCI_					0	0	0		PCLO|p.R5073I|1|0.19|ENSG00000186472|chr7:82760709-82760709|C/A|missense_variant	PCLO|p.R5073I|1|0.19|ENSG00000186472|chr7:82760709-82760709|C/A|missense_variant	PCLO|p.R5073I|1|0.19|ENSG00000186472|chr7:82760709-82760709|C/A|missense_variant	MSMS	A375_MHC_IP_R1	1	658.1871948242188	2	658.43395	1314.85335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.13	1	93.13	92.63	93.63	0								0	0	0	0.16297	1	34231	34231		3.2813	1.7994	1				27838	15145	19822	19986	27297	27297					0.2085139908963356
KVIKKNQVSI	10	Unmodified	_KVIKKNQVSI_					0	0	0		DNAH2|p.M1682I|1|0.38|ENSG00000183914|chr17:7776877-7776877|G/A|missense_variant	DNAH2|p.M1682I|1|0.38|ENSG00000183914|chr17:7776877-7776877|G/A|missense_variant	DNAH2|p.M1682I|1|0.38|ENSG00000183914|chr17:7776877-7776877|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	579.4186401367188	2	578.874248	1155.73394	-0.54843	-0.00031747	0.01196	6.9235E-06	-0.53647	-0.00031055	578.8741232789276	149.65	1.9333	149.65	148.07	150	0					197	61	4	0	0	0	0.72658	1	56798	56798		0.40072	0.093686	1	1008300			27839	762	19823	19987	27298	27298					0.1623052873655979
KVIKKNQVSI	10	Unmodified	_KVIKKNQVSI_					0	0	0		DNAH2|p.M1682I|1|0.38|ENSG00000183914|chr17:7776877-7776877|G/A|missense_variant	DNAH2|p.M1682I|1|0.38|ENSG00000183914|chr17:7776877-7776877|G/A|missense_variant	DNAH2|p.M1682I|1|0.38|ENSG00000183914|chr17:7776877-7776877|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	579.2738647460938	2	578.874248	1155.73394	-0.047925	-2.7743E-05	-0.4447	-0.00025743	-0.49263	-0.00028517	578.8738986001308	149.68	1.9369	149.7	148.07	150.01	0.01825					204	69	4	0	0	0	0.95034	1	58180	58180		0.40072	0.40072	1	939040			27840	762	19823	19987	27299	27299					0.1623052873655979
KVIKTLTEI	9	Unmodified	_KVIKTLTEI_					0	0	0		ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	MULTI-MSMS	A375_MHC_IP_R1	1	523.2363891601562	2	522.8368	1043.65905	-0.34002	-0.00017777	-0.15959	-8.3438E-05	-0.4996	-0.00026121	522.836606672794	44.22	0.4107	44.22	44.01	44.42	0					15	7	3	0	0	0	0.0098859	1	15434	15434		117.76	48.656	1	4001300			27841	4828	19824	19988	27300	27300					0.13896346205319787
KVIKTLTEI	9	Unmodified	_KVIKTLTEI_					0	0	0		ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	523.2362060546875	2	522.8368	1043.65905	-0.45661	-0.00023873	-0.70872	-0.00037054	-1.1653	-0.00060928	522.8364918290133	43.162	0.55706	43.935	43.623	44.181	0.7724					16	10	2	0	0	0	0.46121	1	16099	16099		32.037	22.654	1	2918100			27842	4828	19824	19988	27301	27301					0.13896346205319787
KVILKNFLY	9	Unmodified	_KVILKNFLY_					0	0	0		ENSG00000163655|ENST00000496455|GMPS;nc|ENSG00000163655|P49915-2|GMPS	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	MULTI-SECPEP	A375_MHC_IP_R1	1	569.7552490234375	2	569.35516	1136.69577	0.21427	0.00012199	-0.20447	-0.00011641	0.0098032	5.5815E-06	569.3549895738139	69.554	0.40553	69.554	69.326	69.732	0					14	7	3	0	0	0	0.38578	1	25237	25237		34.402	15.145	1	3031200			27843	6702	19825	19989	27302	27302					0.13288642821885333
KVILKNFLY	9	Unmodified	_KVILKNFLY_					0	0	0		ENSG00000163655|ENST00000496455|GMPS;nc|ENSG00000163655|P49915-2|GMPS	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	MULTI-SECPEP	A375_MHC_IP_R2	2	568.6555786132812	2	569.35516	1136.69577	-0.22249	-0.00012668	-0.30391	-0.00017303	-0.52641	-0.00029971	569.856548594504	68.559	0.40392	69.294	69.121	69.525	0.73512					14	7	2	0	0	0	0.74412	1	26021	26021		10.074	3.3508	1	2712900			27844	6702	19825	19989	27303	27303					0.13288642821885333
KVINAAHSF	9	Unmodified	_KVINAAHSF_					0	0	0		ENSG00000163655|ENST00000496455|GMPS;nc|ENSG00000163655|P49915-2|GMPS	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	MULTI-SECPEP	A375_MHC_IP_R1	1	493.6453552246094	2	493.774534	985.534515	-0.58924	-0.00029095	0.15662	7.7334E-05	-0.43262	-0.00021362	493.77456222944255	25.845	0.50706	25.845	25.714	26.221	0					18	9	3	0	0	0	0.03109	1	7603	7603		103.35	28.931	1	8064700			27845	6702	19826	19990	27304	27304					0.041168935086489
KVINAAHSF	9	Unmodified	_KVINAAHSF_					0	0	0		ENSG00000163655|ENST00000496455|GMPS;nc|ENSG00000163655|P49915-2|GMPS	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1738586425781	2	493.774534	985.534515	-0.9218	-0.00045516	-0.31018	-0.00015316	-1.232	-0.00060832	493.77444000006057	25.101	0.20288	25.744	25.619	25.822	0.64368					6	3	2	0	0	0	0.042716	1	8362	8362		96.367	18.217	1	7249700			27846	6702	19826	19990	27305	27305					0.041168935086489
KVINDGLFYY	10	Unmodified	_KVINDGLFYY_					0	0	0		ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1	ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	MULTI-SECPEP	A375_MHC_IP_R2	2	616.1969604492188	2	616.321514	1230.62847	-0.53396	-0.00032909	0.10693	6.5903E-05	-0.42703	-0.00026319	616.3217068065317	87.359	0.50552	88.092	87.812	88.318	0.733					19	9	3	0	0	0	0.37302	1	33202	33202		47.594	19.108	1	3206300			27847	6144	19827	19991	27306	27306					0.02238567820290882
KVIPVYVGV	9	Unmodified	_KVIPVYVGV_					0	0	0		nc|ENSG00000001631|O00522-2|KRIT1;ENST00000486261.5_1_7:91830052-91864980:-|nuORF;ENST00000475770.5_1_7:91830052-91864980:-|nuORF;ENSG00000001631|ENST00000394505|KRIT1;nc|ENSG00000001631|O00522-3|KRIT1	nc|ENSG00000001631|O00522-2|KRIT1	nc|ENSG00000001631|O00522-2|KRIT1	MULTI-SECPEP	A375_MHC_IP_R1	1	487.7077331542969	2	487.307678	972.600803	-0.27311	-0.00013309	-0.046253	-2.254E-05	-0.31936	-0.00015563	487.30758940915786	75.652	0.40143	75.652	75.464	75.865	0					19	7	3	0	0	0	0.10969	1	27570	27570		57.471	25.354	1	3163600			27848	851	19828	19992	27307	27307					0.11340709350702127
KVIPVYVGV	9	Unmodified	_KVIPVYVGV_					0	0	0		nc|ENSG00000001631|O00522-2|KRIT1;ENST00000486261.5_1_7:91830052-91864980:-|nuORF;ENST00000475770.5_1_7:91830052-91864980:-|nuORF;ENSG00000001631|ENST00000394505|KRIT1;nc|ENSG00000001631|O00522-3|KRIT1	nc|ENSG00000001631|O00522-2|KRIT1	nc|ENSG00000001631|O00522-2|KRIT1	MULTI-MSMS	A375_MHC_IP_R2	2	487.70709228515625	2	487.307678	972.600803	-0.6475	-0.00031553	0.1104	5.3797E-05	-0.5371	-0.00026173	487.30774391459795	74.686	0.50752	75.424	75.214	75.721	0.73751					24	9	4	0	0	0	0.067501	1	28347	28347		57.471	26.835	1	2947500			27849	851	19828	19992	27308	27308					0.11340709350702127
KVIQSVANY	9	Unmodified	_KVIQSVANY_					0	0	0		ENSG00000178950|ENST00000314167|GAK;nc|ENSG00000178950|O14976-2|GAK	ENSG00000178950|ENST00000314167|GAK	ENSG00000178950|ENST00000314167|GAK	MULTI-SECPEP	A375_MHC_IP_R2	2	511.6459655761719	2	511.287474	1020.5604	-0.94819	-0.0004848	-0.54783	-0.0002801	-1.496	-0.0007649	511.28761336881547	35.697	0.35453	36.461	36.233	36.587	0.76338					10	6	2	0	0	0	0.69381	1	12944	12944		15.248	2.7169	1	1757000			27850	8189	19829	19993	27309	27309					0.05093742960275449
KVIVTQTTR	9	Unmodified	_KVIVTQTTR_					0	0	0		DDX60L|p.T1688Pfs*13|1|0.44|ENSG00000181381|chr4:168358206-168358206|T/-|frameshift_variant;ENSG00000181381|ENST00000682922|DDX60L;DDX60L|p.E845Dfs*21|1|0.41|ENSG00000181381|chr4:168419367-168419377|TTTCAAAACAT/-|frameshift_variant;nc|ENSG00000181381|Q5H9U9-2|DDX60L;DDX60L|p.T536M|1|0.2|ENSG00000181381|chr4:168430548-168430548|G/A|missense_variant	DDX60L|p.T1688Pfs*13|1|0.44|ENSG00000181381|chr4:168358206-168358206|T/-|frameshift_variant	DDX60L|p.T1688Pfs*13|1|0.44|ENSG00000181381|chr4:168358206-168358206|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	523.7214965820312	2	523.321848	1044.62914	-0.36467	-0.00019084	-0.27513	-0.00014398	-0.63979	-0.00033482	523.3216165266026	137.14	1.63	137.25	137.02	138.65	0.11134					76	31	4	0	0	0	0.75764	1	54016	54016		1.8442	0	1	45748000			27851	731	19830	19994	27310	27310					0.10861407259972111
KVKAIANLY	9	Unmodified	_KVKAIANLY_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	509.6581726074219	2	510.316035	1018.61752	-0.76828	-0.00039206	-0.07995	-4.08E-05	-0.84823	-0.00043286	510.3158902493485	38.116	0.30561	38.116	37.913	38.218	0					7	5	2	0	0	0	0.60917	1	12903	12903		25.399	8.457	1	2266100			27852	2175	19831	19995	27311	27311					0.10895210236651565
KVKDALEFW	9	Unmodified	_KVKDALEFW_					0	0	0		SLC3A2-GRAP2|2|fusion;nc|ENSG00000168003|P08195-5|SLC3A2;SLC3A2-GRAP2|1|fusion;SLC3A2-GRAP2|4|fusion;ENSG00000168003|ENST00000338663|SLC3A2;nc|ENSG00000168003|P08195-3|SLC3A2;SLC3A2-GRAP2|3|fusion;nc|ENSG00000168003|P08195|SLC3A2;nc|ENSG00000168003|P08195-4|SLC3A2;ENST00000457660.6_1_11:62649366-62653989:+|nuORF	SLC3A2-GRAP2|2|fusion	SLC3A2-GRAP2|2|fusion	MULTI-MSMS	A375_MHC_IP_R1	1	379.60986328125	3	379.209725	1134.60735	0.33963	0.00012879	-0.21004	-7.9648E-05	0.12959	4.9143E-05	379.209615565712	74.557	0.60825	74.557	74.197	74.805	0					29	11	3	0	0	0	0.37338	1	27118	27118		26.021	10.772	1	7805500			27853	14753	19832	19996	27312	27312					0.04542602511401128
KVKDALEFW	9	Unmodified	_KVKDALEFW_					0	0	0		SLC3A2-GRAP2|2|fusion;nc|ENSG00000168003|P08195-5|SLC3A2;SLC3A2-GRAP2|1|fusion;SLC3A2-GRAP2|4|fusion;ENSG00000168003|ENST00000338663|SLC3A2;nc|ENSG00000168003|P08195-3|SLC3A2;SLC3A2-GRAP2|3|fusion;nc|ENSG00000168003|P08195|SLC3A2;nc|ENSG00000168003|P08195-4|SLC3A2;ENST00000457660.6_1_11:62649366-62653989:+|nuORF	SLC3A2-GRAP2|2|fusion	SLC3A2-GRAP2|2|fusion	MULTI-SECPEP	A375_MHC_IP_R1	1	568.7109985351562	2	568.310949	1134.60735	-0.3391	-0.00019271	0.16508	9.3819E-05	-0.17402	-9.8895E-05	568.3108977194667	74.527	0.66006	74.527	74.197	74.857	0					30	12	3	0	0	0	0.10495	1	27113	27113		65.474	27.298	1	9923700			27854	14753	19832	19996	27313	27313					0.04542602511401128
KVKDALEFW	9	Unmodified	_KVKDALEFW_					0	0	0		SLC3A2-GRAP2|2|fusion;nc|ENSG00000168003|P08195-5|SLC3A2;SLC3A2-GRAP2|1|fusion;SLC3A2-GRAP2|4|fusion;ENSG00000168003|ENST00000338663|SLC3A2;nc|ENSG00000168003|P08195-3|SLC3A2;SLC3A2-GRAP2|3|fusion;nc|ENSG00000168003|P08195|SLC3A2;nc|ENSG00000168003|P08195-4|SLC3A2;ENST00000457660.6_1_11:62649366-62653989:+|nuORF	SLC3A2-GRAP2|2|fusion	SLC3A2-GRAP2|2|fusion	MULTI-MSMS	A375_MHC_IP_R2	2	379.6096496582031	3	379.209725	1134.60735	0.12357	4.6858E-05	0.079223	3.0042E-05	0.20279	7.69E-05	379.20968581010504	73.591	0.71449	74.326	73.99	74.704	0.7354					28	13	3	0	0	0	0.16286	1	27897	27897		40.725	19.135	1	8441200			27855	14753	19832	19996	27314	27314					0.04542602511401128
KVKDALEFW	9	Unmodified	_KVKDALEFW_					0	0	0		SLC3A2-GRAP2|2|fusion;nc|ENSG00000168003|P08195-5|SLC3A2;SLC3A2-GRAP2|1|fusion;SLC3A2-GRAP2|4|fusion;ENSG00000168003|ENST00000338663|SLC3A2;nc|ENSG00000168003|P08195-3|SLC3A2;SLC3A2-GRAP2|3|fusion;nc|ENSG00000168003|P08195|SLC3A2;nc|ENSG00000168003|P08195-4|SLC3A2;ENST00000457660.6_1_11:62649366-62653989:+|nuORF	SLC3A2-GRAP2|2|fusion	SLC3A2-GRAP2|2|fusion	MULTI-SECPEP	A375_MHC_IP_R2	2	568.7105712890625	2	568.310949	1134.60735	-0.30824	-0.00017517	0.098712	5.6099E-05	-0.20952	-0.00011907	568.3109136791729	73.577	0.76392	74.312	74.041	74.805	0.7354					34	14	4	0	0	0	0.048303	1	27898	27898		83.429	25.707	1	9761400			27856	14753	19832	19996	27315	27315					0.04542602511401128
KVKEFFEKL	9	Unmodified	_KVKEFFEKL_					0	0	0		nc|ENSG00000204977|O60858-3|TRIM13;ENSG00000204977|ENST00000378182|TRIM13	nc|ENSG00000204977|O60858-3|TRIM13	nc|ENSG00000204977|O60858-3|TRIM13	MULTI-MSMS	A375_MHC_IP_R1	1	390.29742431640625	3	389.897258	1166.66995	0.56565	0.00022055	-0.0024391	-9.5101E-07	0.56321	0.0002196	389.8971246748076	45.267	0.60571	45.267	44.98	45.585	0					33	11	4	0	0	0	0.025728	1	15820	15820		78.61	30.878	1	6577700			27857	9493	19833	19997	27316	27316					0.09327748579607942
KVKEFFEKL	9	Unmodified	_KVKEFFEKL_					0	0	0		nc|ENSG00000204977|O60858-3|TRIM13;ENSG00000204977|ENST00000378182|TRIM13	nc|ENSG00000204977|O60858-3|TRIM13	nc|ENSG00000204977|O60858-3|TRIM13	MULTI-MSMS	A375_MHC_IP_R2	2	390.29718017578125	3	389.897258	1166.66995	-0.056075	-2.1864E-05	-0.089135	-3.4754E-05	-0.14521	-5.6617E-05	389.8971694111005	44.147	0.50645	44.916	44.732	45.239	0.76909					23	9	3	0	0	0	0.017116	1	16475	16475		87.123	39.391	1	6785500			27858	9493	19833	19997	27317	27317					0.09327748579607942
KVKEKLEIL	9	Unmodified	_KVKEKLEIL_					0	0	0			REV__tr|U7STE7|U7STE7_FUSNUYhcGPDDEXKnucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01383PE=4SV=1	REV__tr|U7STE7|U7STE7_FUSNUYhcGPDDEXKnucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01383PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	366.64483642578125	3	367.241025	1098.70125	0.12351	4.5359E-05	-0.029156	-1.0707E-05	0.094358	3.4652E-05	367.2410189484189	31.55	0.56217	32.273	31.774	32.336	0.72286					13	10	2	0	0	0	0.67471	1	11034	11034		17.443	1.704	1	1348400	+		27859	28480	19834	19998	27318	27318					0.1558432161368728
KVKEPETLE	9	Unmodified	_KVKEPETLE_					0	0	0			REV__tr|U7SPU9|U7SPU9_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01710PE=4SV=1	REV__tr|U7SPU9|U7SPU9_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01710PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	357.94110107421875	3	358.201007	1071.58119	0.0071869	2.5744E-06	0.94168	0.00033731	0.94887	0.00033989	358.20123516176824	28.259	1.2115	28.259	27.533	28.745	0					29	23	2	0	0	0	0.71341	1	8511	8511		12.873	2.722	1	1526500	+		27860	28365	19835	19999	27319	27319					0.04826288549293167
KVKGKTQEK	9	Unmodified	_KVKGKTQEK_					0	0	0			REV__nc|ENSG00000143870|Q15084-3|PDIA6	REV__nc|ENSG00000143870|Q15084-3|PDIA6	MULTI-MSMS	A375_MHC_IP_R1	1	523.7214965820312	2	523.321848	1044.62914	-0.80243	-0.00041993	0.22986	0.00012029	-0.57257	-0.00029964	523.3218663856467	137.2	1.3324	137.2	136.97	138.31	0					73	25	5	0	0	0	0.75764	1	52805	52805		1.8442	0	1	49923000	+		27861	19395	19836	20000	27320	27320					0.10861407259994849
KVKGPFVTW	9	Unmodified	_KVKGPFVTW_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;ENST00000570129.1_1_16:27494722-27497377:-|nuORF	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-SECPEP	A375_MHC_IP_R2	2	531.18505859375	2	531.310752	1060.60695	-0.96287	-0.00051158	-0.13562	-7.2059E-05	-1.0985	-0.00058364	531.3107278684511	57.652	1.0635	58.401	57.865	58.929	0.74894					44	20	3	0	0	0	0.061442	1	21737	21737		72.968	38.566	1	16204000			27862	1649	19837	20001	27321	27321					0.07907227582222731
KVKKGGGG	8	Unmodified	_KVKKGGGG_					0	0	0		ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119;ENST00000578434.1_1_17:26879057-26879575:-|nuORF	ENSG00000109103|ENST00000335765|UNC119;ENST00000578434.1_1_17:26879057-26879575:-|nuORF	ENSG00000109103|ENST00000335765|UNC119	MULTI-MSMS	A375_MHC_IP_R1	1	730.8584594726562	1	730.456999	729.449723	-0.90802	-0.00066327	2.2395	0.0016359	1.3315	0.00097259	730.4588119497777	144.22	0.23755	144.22	144.16	144.4	0					5	4	2	0	0	0	0.77861	1	55345	55345		0	0	1	314850			27863	2855;13654	19838	20002	27322	27322					0.07417567762718136
KVKKLKLKRSL	11	Unmodified	_KVKKLKLKRSL_					0	0	0			REV__ENST00000492526.5_1_15:59204769-59209171:-|nuORF	REV__ENST00000492526.5_1_15:59204769-59209171:-|nuORF	MSMS	A375_MHC_IP_R2	2	670.928466796875	2	670.976839	1339.93913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.52	1	115.22	114.72	115.72	0.7028								0	0	0	0.1636	1	43169	43169		0	0	1		+		27864	25410	19839	20003	27323	27323					0.2827530726679015
KVKKMQKKL	9	Unmodified	_KVKKMQKKL_					0	0	0			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MULTI-MSMS	A375_MHC_IP_R1	1	1130.8173828125	1	1130.7442	1129.73692	0.17443	0.00019724	4.1146	0.0046526	4.2891	0.0048499	1131.7499715040638	117.96	0.30334	117.96	117.87	118.17	0					8	5	2	0	0	0	0.75764	1	43339	43339		1.8442	0.19162	1	7326200	+		27865	22389	19840	20004	27324	27324					0.17724080589709956
KVKLVLRVPPR	11	Unmodified	_KVKLVLRVPPR_					0	0	0			REV__ZNF710|p.P107L|1|0.44|ENSG00000140548|chr15:90067457-90067457|C/T|missense_variant	REV__ZNF710|p.P107L|1|0.44|ENSG00000140548|chr15:90067457-90067457|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	652.9951171875	2	652.948082	1303.88161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.57	1	106.57	106.07	107.07	0								0	0	0	0.16354	1	39115	39115		0.30703	0.30703	1		+		27866	29052	19841	20005	27325	27325					0.24182465061198855
KVKPNLQTF	9	Unmodified	_KVKPNLQTF_					0	0	0		ENST00000480102.1_1_2:86352635-86354493:+|nuORF;ENST00000484203.5_1_2:86348636-86354493:+|nuORF;ENSG00000132300|ENST00000254630|PTCD3;ENST00000594883.1_1_19:57687347-57687830:+|nuORF	ENST00000480102.1_1_2:86352635-86354493:+|nuORF	ENST00000480102.1_1_2:86352635-86354493:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	538.2185668945312	2	537.818941	1073.62333	-0.72066	-0.00038758	0.034783	1.8707E-05	-0.68588	-0.00036888	537.8188852664988	31.296	0.5576	31.296	31.059	31.616	0					23	10	3	0	0	0	0.091861	1	10019	10019		96.367	58.393	1	4520200			27867	4388	19842	20006	27326	27326					0.0894630874829545
KVKPNLQTF	9	Unmodified	_KVKPNLQTF_					0	0	0		ENST00000480102.1_1_2:86352635-86354493:+|nuORF;ENST00000484203.5_1_2:86348636-86354493:+|nuORF;ENSG00000132300|ENST00000254630|PTCD3;ENST00000594883.1_1_19:57687347-57687830:+|nuORF	ENST00000480102.1_1_2:86352635-86354493:+|nuORF	ENST00000480102.1_1_2:86352635-86354493:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	538.2182006835938	2	537.818941	1073.62333	-0.88293	-0.00047485	-0.23739	-0.00012767	-1.1203	-0.00060253	537.8187595255029	30.53	0.60531	31.249	30.911	31.517	0.71857					26	11	3	0	0	0	0.024772	1	10729	10729		96.367	58.393	1	3679800			27868	4388	19842	20006	27327	27327					0.0894630874829545
KVKTIDVHL	9	Unmodified	_KVKTIDVHL_					0	0	0		ENST00000222573.4_1_7:20371460-20406689:+|nuORF	ENST00000222573.4_1_7:20371460-20406689:+|nuORF	ENST00000222573.4_1_7:20371460-20406689:+|nuORF	MSMS	A375_MHC_IP_R1	1	351.6011962890625	3	351.553603	1051.63898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.611	1	33.611	33.111	34.111	0								0	0	0	0.15486	1	10991	10991		7.1017	2.5729	1				27869	10112	19843	20007	27328	27328					0.11522595265364544
KVKTKKSTKTI	11	Unmodified	_KVKTKKSTKTI_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-MSMS	A375_MHC_IP_R1	1	631.8130493164062	2	631.413737	1260.81292	-0.99252	-0.00062669	0.27763	0.0001753	-0.71489	-0.00045139	631.4137347040698	149.4	2.5413	149.4	147.46	150	0					321	103	5	0	0	0	0.73897	2	57082	56685;57082		0.35063	0.35063	1	1711700			27870	1236	19844	20008	27329;27330	27330					0.19294755970827282
KVKTKKSTKTI	11	Unmodified	_KVKTKKSTKTI_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-MSMS	A375_MHC_IP_R2	2	631.8135375976562	2	631.413737	1260.81292	-0.61563	-0.00038872	0.038409	2.4252E-05	-0.57722	-0.00036447	631.4135991212529	149.48	2.0089	149.49	148	150.01	0.01825					288	71	5	0	0	0	0.73897	3	58040	57655;57854;58040		0.35063	0.35063	1	1571500			27871	1236	19844	20008	27331;27332;27333	27333					0.19294755970827282
KVKTKKSTKTI	11	Unmodified	_KVKTKKSTKTI_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	631.413737	1260.81292	-0.99252	-0.00062669	0.27763	0.0001753	-0.71489	-0.00045139	631.4137347040698	149.4	2.5413	149.4	147.46	150	0	-0.044807	0.00016551	NaN	0.35063	321	103	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1711700			27872	1236	19844	20008							0.19294755970827282
KVKVGVNGF	9	Unmodified	_KVKVGVNGF_					0	0	0		ENSG00000111640|ENST00000229239|GAPDH;ENST00000396856.5_1_12:6643998-6645957:+|nuORF	ENSG00000111640|ENST00000229239|GAPDH	ENSG00000111640|ENST00000229239|GAPDH	MULTI-SECPEP	A375_MHC_IP_R1	1	474.68731689453125	2	474.287277	946.560001	-0.46504	-0.00022056	0.090049	4.2709E-05	-0.37499	-0.00017785	474.2872335938679	33.976	0.50539	33.976	33.698	34.203	0					24	9	4	0	0	0	0.0018583	1	11119	11119		164.52	100.28	1	26152000			27873	3003	19845	20009	27334	27334					0.08458368031097052
KVKVGVNGF	9	Unmodified	_KVKVGVNGF_					0	0	0		ENSG00000111640|ENST00000229239|GAPDH;ENST00000396856.5_1_12:6643998-6645957:+|nuORF	ENSG00000111640|ENST00000229239|GAPDH	ENSG00000111640|ENST00000229239|GAPDH	MULTI-MSMS	A375_MHC_IP_R2	2	474.6864929199219	2	474.287277	946.560001	-0.70179	-0.00033285	0.091474	4.3385E-05	-0.61031	-0.00028946	474.28727676010277	33.113	0.51025	33.865	33.635	34.146	0.75225					24	9	4	0	0	0	0.00082901	1	11819	11819		196.65	132.41	1	25288000			27874	3003	19845	20009	27335	27335					0.08458368031097052
KVLDDMEGNQ	10	Unmodified	_KVLDDMEGNQ_					0	0	0		nc|ENSG00000028116|Q86Y07-5|VRK2;nc|ENSG00000028116|Q86Y07-2|VRK2;ENSG00000028116|ENST00000340157|VRK2	nc|ENSG00000028116|Q86Y07-5|VRK2	nc|ENSG00000028116|Q86Y07-5|VRK2	MSMS	A375_MHC_IP_R2	2	574.7108154296875	2	574.766245	1147.51794	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.939	1	97.695	97.195	98.195	0.75586								0	0	0	0.14179	1	36799	36799		29.082	12.139	1				27875	1100	19846	20010	27336	27336					-0.049920202302701
KVLDFEHFL	9	Unmodified	_KVLDFEHFL_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	A375_MHC_IP_R1	1	383.5645446777344	3	383.209725	1146.60735	0.35817	0.00013725	0.24204	9.2752E-05	0.60021	0.00023001	383.20974632386617	98.076	0.8644	98.076	97.794	98.659	0					42	16	4	0	0	0	0.0099105	2	36071	35982;36071		96.936	74.161	1	21985000			27876	2012	19847	20011	27337;27338	27338					0.03990602511407815
KVLDFEHFL	9	Unmodified	_KVLDFEHFL_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	A375_MHC_IP_R2	2	383.6099548339844	3	383.209725	1146.60735	-0.30177	-0.00011564	0.20296	7.7778E-05	-0.098804	-3.7863E-05	383.209755523562	97.13	0.91385	97.885	97.569	98.483	0.75586					51	17	4	0	0	0	0.60101	1	36815	36815		14.405	9.9992	1	22455000			27877	2012	19847	20011	27339	27339					0.03990602511407815
KVLDFEHFL	9	Unmodified	_KVLDFEHFL_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-SECPEP	A375_MHC_IP_R2	2	573.6220092773438	2	574.310949	1146.60735	-0.41278	-0.00023707	-0.22459	-0.00012899	-0.63738	-0.00036605	574.3108290918658	97.098	1.5737	97.854	97.469	99.043	0.75586					97	30	5	0	0	0	8.8348E-05	1	36831	36831		176.84	134.88	1	121170000			27878	2012	19847	20011	27340	27340					0.03990602511407815
KVLDIIATI	9	Unmodified	_KVLDIIATI_					0	0	0		ENSG00000049860|ENST00000261416|HEXB;ENST00000504459.5_1_5:74009375-74016573:+|nuORF	ENSG00000049860|ENST00000261416|HEXB	ENSG00000049860|ENST00000261416|HEXB	MULTI-MSMS	A375_MHC_IP_R1	1	493.7181396484375	2	493.318243	984.621933	-0.11332	-5.5902E-05	0.25267	0.00012465	0.13935	6.8745E-05	493.318441956039	107.32	1.0213	107.32	106.78	107.8	0					37	19	4	0	0	0	0.0098183	1	39381	39381		114.65	32.759	1	4905700			27879	1224	19848	20012	27341	27341					0.12900674659567812
KVLDIIATI	9	Unmodified	_KVLDIIATI_					0	0	0		ENSG00000049860|ENST00000261416|HEXB;ENST00000504459.5_1_5:74009375-74016573:+|nuORF	ENSG00000049860|ENST00000261416|HEXB	ENSG00000049860|ENST00000261416|HEXB	MULTI-MSMS	A375_MHC_IP_R2	2	493.7178039550781	2	493.318243	984.621933	-0.53577	-0.00026431	0.29279	0.00014444	-0.24299	-0.00011987	493.3183903218444	106.33	0.91643	107.09	106.58	107.5	0.75977					31	17	3	0	0	0	0.0090297	1	40183	40183		99.755	7.102	1	3437400			27880	1224	19848	20012	27342	27342					0.12900674659567812
KVLDILQHI	9	Unmodified	_KVLDILQHI_					0	0	0		ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	MULTI-SECPEP	A375_MHC_IP_R1	1	540.2342529296875	2	539.834591	1077.65463	-0.59136	-0.00031924	0.030054	1.6224E-05	-0.5613	-0.00030301	539.8346347295814	88.224	0.6123	88.224	87.898	88.51	0					21	11	3	0	0	0	0.016541	1	32372	32372		96.936	41.433	1	4658500			27881	4646	19849	20013	27343	27343					0.11890881782437646
KVLDILQHI	9	Unmodified	_KVLDILQHI_					0	0	0		ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	MULTI-SECPEP	A375_MHC_IP_R2	2	540.2339477539062	2	539.834591	1077.65463	-0.7369	-0.0003978	0.072973	3.9394E-05	-0.66392	-0.00035841	539.8346699840846	87.156	0.75856	87.889	87.509	88.268	0.733					22	14	3	0	0	0	0.011004	1	33134	33134		121.35	57.385	1	4299600			27882	4646	19849	20013	27344	27344					0.11890881782437646
KVLDKMKSF	9	Unmodified	_KVLDKMKSF_					0	0	0		nc|ENSG00000105220|P06744-2|GPI;ENSG00000105220|ENST00000356487|GPI;ENST00000589504.1_1_19:34856171-34859700:+|nuORF	nc|ENSG00000105220|P06744-2|GPI	nc|ENSG00000105220|P06744-2|GPI	MULTI-MSMS	A375_MHC_IP_R2	2	548.7149047851562	2	548.315177	1094.6158	-0.81092	-0.00044464	-0.72239	-0.0003961	-1.5333	-0.00084074	548.3144246484351	30.788	0.50389	31.507	31.266	31.77	0.71857					14	9	2	0	0	0	0.4782	1	10868	10868		20.871	6.2894	1	2637400			27883	2576	19850	20014	27345	27345					0.07227833156389352
KVLDKMKSF	9	Unmodified	_KVLDKMKSF_					0	0	0		nc|ENSG00000105220|P06744-2|GPI;ENSG00000105220|ENST00000356487|GPI;ENST00000589504.1_1_19:34856171-34859700:+|nuORF	nc|ENSG00000105220|P06744-2|GPI	nc|ENSG00000105220|P06744-2|GPI	MULTI-SECPEP	A375_MHC_IP_R2	2	366.27911376953125	3	365.87921	1094.6158	0.048497	1.7744E-05	-0.059153	-2.1643E-05	-0.010656	-3.8987E-06	365.8791078137052	30.773	0.70733	31.491	31.216	31.923	0.71857					25	13	3	0	0	0	0.13244	1	10819	10819		41.347	25.608	1	18794000			27884	2576	19850	20014	27346	27346					0.07227833156389352
KVLDKVFRA	9	Unmodified	_KVLDKVFRA_					0	0	0		MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;ENST00000470521.1_1_1:222791452-222819114:+|nuORF	MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant;ENST00000470521.1_1_1:222791452-222819114:+|nuORF	MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	359.95989990234375	3	359.225598	1074.65496	-0.090914	-3.2659E-05	-0.18259	-6.5593E-05	-0.27351	-9.8251E-05	359.22549794676314	36.385	0.61148	36.385	36.133	36.745	0					37	11	4	0	0	0	0.014055	1	12148	12148		91.085	57.64	1	30084000			27885	6080;12336	19851	20015	27347	27347					0.12062301502282935
KVLDLQVDKPP	11	Unmodified	_KVLDLQVDKPP_					0	0	0			REV__ENSG00000159792|ENST00000291041|PSKH1	REV__ENSG00000159792|ENST00000291041|PSKH1	MULTI-SECPEP	A375_MHC_IP_R2	2	418.31475830078125	3	417.915089	1250.72344	0.092052	3.847E-05	-0.81841	-0.00034203	-0.72636	-0.00030356	418.2489309046599	46.604	0.45893	47.369	47.058	47.517	0.76519					15	8	3	0	0	0	0.87263	1	17464	17464		29.281	10.56	1	3252200	+		27886	20136	19852	20016	27348	27348					0.1081050129146206
KVLDTKWTL	9	Unmodified	_KVLDTKWTL_					0	0	0		CON__P13647;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P04259;CON__P48668;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000185479|ENST00000252252|KRT6B	CON__P13647	CON__P13647	MULTI-MSMS	A375_MHC_IP_R2	2	552.7261352539062	2	552.326599	1102.63865	-1.0159	-0.00056112	-0.5987	-0.00033068	-1.6146	-0.0008918	552.3271740484411	62.056	0.60584	62.799	62.319	62.925	0.74263					21	11	3	0	0	0	0.23949	2	23550	23478;23550		35.08	14.499	1	1936400		+	27887	589	19853	20017	27349;27350	27350					0.09143175545523263
KVLDVLWEL	9	Unmodified	_KVLDVLWEL_					0	0	0		ENSG00000162402|ENST00000294383|USP24;USP24|p.K1184Mfs*22|1|0.08|ENSG00000162402|chr1:55129543-55129561|TCAGCTGTTGGCATGAGTT/-|frameshift_variant	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	A375_MHC_IP_R1	1	558.2291259765625	2	557.828975	1113.6434	-0.08292	-4.6255E-05	-0.76901	-0.00042898	-0.85193	-0.00047523	557.8285060210417	127.14	0.35487	127.14	127.01	127.37	0					8	6	2	0	0	0	0.02114	1	48681	48681		82.529	15.185	1	20105000			27888	6526	19854	20018	27351	27351					0.09112059688254703
KVLDVLWEL	9	Unmodified	_KVLDVLWEL_					0	0	0		ENSG00000162402|ENST00000294383|USP24;USP24|p.K1184Mfs*22|1|0.08|ENSG00000162402|chr1:55129543-55129561|TCAGCTGTTGGCATGAGTT/-|frameshift_variant	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	A375_MHC_IP_R2	2	558.228759765625	2	557.828975	1113.6434	-0.72282	-0.00040321	-0.047122	-2.6286E-05	-0.76994	-0.0004295	557.8289868022043	126.77	0.25311	127.03	126.9	127.16	0.26593					7	4	2	0	0	0	0.032333	1	49647	49647		72.968	26.947	1	11080000			27889	6526	19854	20018	27352	27352					0.09112059688254703
KVLDVSNSF	9	Unmodified	_KVLDVSNSF_					0	0	0		ENSG00000103035|ENST00000219313|PSMD7;ENST00000566015.1_1_16:74330767-74334139:+|nuORF	ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	MULTI-SECPEP	A375_MHC_IP_R1	1	505.17132568359375	2	504.771657	1007.52876	-0.44151	-0.00022286	0.055633	2.8082E-05	-0.38588	-0.00019478	504.7716715780285	58.557	0.91254	58.557	57.923	58.836	0					25	17	2	0	0	0	0.13208	1	21027	21027		57.722	21.595	1	4099800			27890	2412	19855	20019	27353	27353					0.02529750206326753
KVLDVSNSF	9	Unmodified	_KVLDVSNSF_					0	0	0		ENSG00000103035|ENST00000219313|PSMD7;ENST00000566015.1_1_16:74330767-74334139:+|nuORF	ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	MULTI-SECPEP	A375_MHC_IP_R2	2	505.1715393066406	2	504.771657	1007.52876	-0.98976	-0.0004996	0.44452	0.00022438	-0.54524	-0.00027522	504.7717558154866	57.685	0.45826	58.434	58.221	58.679	0.74894					19	8	3	0	0	0	0.087712	1	21816	21816		66.457	22.598	1	4482500			27891	2412	19855	20019	27354	27354					0.02529750206326753
KVLEAVKTIK	10	Unmodified	_KVLEAVKTIK_					0	0	0			REV__ENST00000272227.7_1_2:10933301-10937275:-|nuORF	REV__ENST00000272227.7_1_2:10933301-10937275:-|nuORF	MSMS	A375_MHC_IP_R2	2	564.7696533203125	2	564.871174	1127.72779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.973	1	29.672	29.172	30.172	0.69872								0	0	0	0.15372	1	10074	10074		8.7454	1.4562	1		+		27892	23277	19856	20020	27355	27355					0.16904010505027145
KVLEDRYLL	9	Unmodified	_KVLEDRYLL_					0	0	0			REV__DDHD1|p.P496L|1|0.35|ENSG00000100523|chr14:53072613-53072613|G/A|missense_variant	REV__DDHD1|p.P496L|1|0.35|ENSG00000100523|chr14:53072613-53072613|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	383.948486328125	3	383.560646	1147.66011	-0.54723	-0.0002099	0.37227	0.00014279	-0.17496	-6.7108E-05	383.5607457870969	53.762	0.71814	54.513	54.198	54.916	0.75105					37	13	4	0	0	0	0.70902	1	20214	20214		6.1918	0.40842	1	21763000	+		27893	15972	19857	20021	27356	27356					0.09218560574208823
KVLEERQRF	9	Unmodified	_KVLEERQRF_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	A375_MHC_IP_R1	1	402.2755126953125	3	402.231412	1203.67241	-0.17136	-6.8925E-05	-0.068028	-2.7363E-05	-0.23938	-9.6288E-05	402.23150421999134	21.129	1.0689	21.129	20.587	21.656	0					68	20	4	0	0	0	0.23226	3	5632	5407;5632;5661		35.612	18.564	1	5415900			27894	4888	19858	20022	27357;27358;27359	27358					0.07871597037274114
KVLEHVVRV	9	Unmodified	_KVLEHVVRV_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;ENSG00000156009|ENST00000286482|MAGEA8	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-MSMS	A375_MHC_IP_R1	1	360.62908935546875	3	360.229231	1077.66586	-0.33341	-0.0001201	-0.25138	-9.0554E-05	-0.58479	-0.00021066	360.2292197366001	29.328	2.6203	29.328	29.098	31.718	0					96	51	2	0	0	0	0.0061124	3	9137	9137;9947;10159		111.31	46.382	1	1383500000			27895	520	19859	20023	27360;27361;27362	27360					0.13013703876549698
KVLEHVVRV	9	Unmodified	_KVLEHVVRV_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;ENSG00000156009|ENST00000286482|MAGEA8	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-SECPEP	A375_MHC_IP_R1	1	540.23974609375	2	539.840208	1077.66586	-1.113	-0.00060087	0.43775	0.00023632	-0.6753	-0.00036455	539.840418098166	29.327	0.65017	29.327	29.098	29.748	0					33	12	5	0	0	0	0.0043223	1	9139	9139		218.2	100.13	1	210110000			27896	520	19859	20023	27363	27363					0.13013703876549698
KVLEHVVRV	9	Unmodified	_KVLEHVVRV_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;ENSG00000156009|ENST00000286482|MAGEA8	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-MSMS	A375_MHC_IP_R2	2	360.62896728515625	3	360.229231	1077.66586	-0.6396	-0.0002304	-0.18005	-6.4858E-05	-0.81965	-0.00029526	360.2292214461757	28.407	4.1444	29.086	28.858	33.003	0.67857					130	81	2	0	0	0	0.0061124	2	9765	9765;10645		111.31	38.113	1	1508799999.9999998			27897	520	19859	20023	27364;27365	27364					0.13013703876549698
KVLEHVVRV	9	Unmodified	_KVLEHVVRV_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;ENSG00000156009|ENST00000286482|MAGEA8	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-MSMS	A375_MHC_IP_R2	2	540.64404296875	2	539.840208	1077.66586	-1.2746	-0.00068807	0.28732	0.00015511	-0.98726	-0.00053296	539.8403177450946	28.407	0.45479	29.086	28.858	29.313	0.67857					27	8	5	0	0	0	0.41879	1	9874	9874		23.79	12.295	1	202600000			27898	520	19859	20023	27366	27366					0.13013703876549698
KVLEILGKKF	10	Unmodified	_KVLEILGKKF_					0	0	0		ENST00000440465.1_1_10:36811746-36813066:-|nuORF;ENSG00000105835|ENST00000222553|NAMPT	ENST00000440465.1_1_10:36811746-36813066:-|nuORF	ENST00000440465.1_1_10:36811746-36813066:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	392.6565856933594	3	392.256787	1173.74853	0.16241	6.3706E-05	0.19825	7.7765E-05	0.36066	0.00014147	392.2568039759107	55.67	0.61005	55.67	55.381	55.991	0					21	11	3	0	0	0	0.10407	1	19928	19928		62.78	27.168	1	3903500			27899	2641	19860	20024	27367	27367					0.16860600884683663
KVLEILGKKF	10	Unmodified	_KVLEILGKKF_					0	0	0		ENST00000440465.1_1_10:36811746-36813066:-|nuORF;ENSG00000105835|ENST00000222553|NAMPT	ENST00000440465.1_1_10:36811746-36813066:-|nuORF	ENST00000440465.1_1_10:36811746-36813066:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	392.6567077636719	3	392.256787	1173.74853	-0.38367	-0.0001505	0.2878	0.00011289	-0.095867	-3.7604E-05	392.25688216268526	54.594	0.45698	55.345	55.118	55.575	0.75075					19	8	3	0	0	0	0.24209	1	20603	20603		44.945	14.513	1	4874300			27900	2641	19860	20024	27368	27368					0.16860600884683663
KVLEILHRV	9	Unmodified	_KVLEILHRV_					0	0	0		nc|ENSG00000148634|Q5GLZ8-6|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000460168.1_1_10:69726418-69749980:-|nuORF	nc|ENSG00000148634|Q5GLZ8-6|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-MSMS	A375_MHC_IP_R1	1	369.97320556640625	3	369.572998	1105.69716	0.83936	0.0003102	-0.50489	-0.00018659	0.33447	0.00012361	369.5727801143539	45.005	0.96005	45.005	44.727	45.687	0					47	18	4	0	0	0	0.0089117	2	15691	15691;15897		97.741	67.038	1	37142000			27901	5755	19861	20025	27369;27370	27369					0.14854276910659792
KVLEILHRV	9	Unmodified	_KVLEILHRV_					0	0	0		nc|ENSG00000148634|Q5GLZ8-6|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000460168.1_1_10:69726418-69749980:-|nuORF	nc|ENSG00000148634|Q5GLZ8-6|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-SECPEP	A375_MHC_IP_R1	1	554.2551879882812	2	553.855858	1105.69716	-0.0047826	-2.6489E-06	-0.61167	-0.00033878	-0.61645	-0.00034143	553.8554886365908	45.02	0.4571	45.02	44.777	45.234	0					15	8	2	0	0	0	0.3697	1	15725	15725		48.073	24.283	1	4743000			27902	5755	19861	20025	27371	27371					0.14854276910659792
KVLEILHRV	9	Unmodified	_KVLEILHRV_					0	0	0		nc|ENSG00000148634|Q5GLZ8-6|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000460168.1_1_10:69726418-69749980:-|nuORF	nc|ENSG00000148634|Q5GLZ8-6|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-MSMS	A375_MHC_IP_R2	2	369.6049499511719	3	369.572998	1105.69716	0.49636	0.00018344	-0.29227	-0.00010802	0.20409	7.5425E-05	369.5728615031707	43.836	0.75685	44.605	44.329	45.086	0.7691					41	14	4	0	0	0	0.024772	2	16348	16310;16348		79.427	54.545	1	29216000			27903	5755	19861	20025	27372;27373	27373					0.14854276910659792
KVLEILHRV	9	Unmodified	_KVLEILHRV_					0	0	0		nc|ENSG00000148634|Q5GLZ8-6|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000460168.1_1_10:69726418-69749980:-|nuORF	nc|ENSG00000148634|Q5GLZ8-6|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-SECPEP	A375_MHC_IP_R2	2	554.2555541992188	2	553.855858	1105.69716	-0.57045	-0.00031595	-0.28087	-0.00015556	-0.85132	-0.00047151	553.8557942730016	43.831	0.4529	44.6	44.38	44.833	0.76909					18	8	3	0	0	0	0.48845	1	16385	16385		24.882	11.839	1	2352800			27904	5755	19861	20025	27374	27374					0.14854276910659792
KVLELQRKL	9	Unmodified	_KVLELQRKL_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-MSMS	A375_MHC_IP_R1	1	376.5890197753906	3	376.248403	1125.72338	-0.0086889	-3.2692E-06	0.16597	6.2446E-05	0.15728	5.9177E-05	376.24840531237174	29.939	1.554	29.939	29.657	31.211	0					84	30	4	0	0	0	0.0095015	4	9522	9398;9522;9539;9646		111.31	34.367	1	97095000			27905	2362	19862	20026	27375;27376;27377;27378	27376					0.16554546082124943
KVLELQRKL	9	Unmodified	_KVLELQRKL_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-MSMS	A375_MHC_IP_R1	1	564.268310546875	2	563.868966	1125.72338	-0.77169	-0.00043513	0.086441	4.8742E-05	-0.68525	-0.00038639	563.8690332767625	29.941	0.95503	29.941	29.748	30.703	0					33	18	2	0	0	0	0.021239	2	9431	9431;9708		97.741	35.168	1	16537000			27906	2362	19862	20026	27379;27380	27379					0.16554546082124943
KVLELQRKL	9	Unmodified	_KVLELQRKL_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-MSMS	A375_MHC_IP_R2	2	376.6361083984375	3	376.248403	1125.72338	-0.56699	-0.00021333	0.21781	8.1952E-05	-0.34917	-0.00013138	376.2484334449969	29.031	1.3047	29.73	29.434	30.739	0.69872					74	25	4	0	0	0	0.018166	4	10265	10026;10204;10265;10288		85.764	24.674	1	99201000			27907	2362	19862	20026	27381;27382;27383;27384	27383					0.16554546082124943
KVLELQRKL	9	Unmodified	_KVLELQRKL_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-MSMS	A375_MHC_IP_R2	2	564.1793212890625	2	563.868966	1125.72338	-1.3149	-0.00074141	0.14966	8.4386E-05	-1.1652	-0.00065702	563.8690281583795	28.911	0.80188	29.609	29.484	30.286	0.69872					27	15	2	0	0	0	0.044232	1	10133	10133		70.929	38.143	1	16135000			27908	2362	19862	20026	27385	27385					0.16554546082124943
KVLELQRKL	9	Unmodified	_KVLELQRKL_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-SECPEP	A375_MHC_IP_R2	2	376.9679870605469	3	376.248403	1125.72338	0.22337	8.4044E-05	-0.90769	-0.00034152	-0.68431	-0.00025747	376.24823435097665	30.522	0.55679	31.241	30.86	31.417	0.71857					15	10	2	0	0	0	0.73926	1	10669	10669		17.443	2.1942	1	732330			27909	2362	19862	20026	27386	27386					0.16554546082124943
KVLERVNAV	9	Unmodified	_KVLERVNAV_					0	0	0		ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENSG00000100911|ENST00000216802|PSME2;ENST00000559359.1_1_14:24613399-24613677:-|nuORF;ENST00000453033.1_1_13:49345602-49345743:+|nuORF;ENST00000471700.6_1_14:24612807-24615772:-|nuORF	ENST00000442824.1_1_5:97549420-97549822:+|nuORF	ENST00000442824.1_1_5:97549420-97549822:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	514.7163696289062	2	514.316566	1026.61858	-0.70844	-0.00036436	0.064206	3.3022E-05	-0.64423	-0.00033134	514.3165444924748	27.002	0.55223	27.002	26.779	27.331	0					27	10	3	0	0	0	0.010039	1	8108	8108		148.27	48.469	1	44292000			27910	2230	19863	20027	27387	27387					0.10633424605566688
KVLERVNAV	9	Unmodified	_KVLERVNAV_					0	0	0		ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENSG00000100911|ENST00000216802|PSME2;ENST00000559359.1_1_14:24613399-24613677:-|nuORF;ENST00000453033.1_1_13:49345602-49345743:+|nuORF;ENST00000471700.6_1_14:24612807-24615772:-|nuORF	ENST00000442824.1_1_5:97549420-97549822:+|nuORF	ENST00000442824.1_1_5:97549420-97549822:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	514.7156982421875	2	514.316566	1026.61858	-1.1686	-0.00060104	0.13283	6.8316E-05	-1.0358	-0.00053273	514.3166181153713	26.171	0.66024	26.831	26.602	27.262	0.65992					34	12	4	0	0	0	0.0020207	1	8808	8808		155.95	56.155	1	32003000			27911	2230	19863	20027	27388	27388					0.10633424605566688
KVLETLVTV	9	Unmodified	_KVLETLVTV_					0	0	0		nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A;ENST00000551414.1_1_14:31762513-31765297:-|nuORF	nc|ENSG00000129493|Q86XA9-2|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	MULTI-SECPEP	A375_MHC_IP_R2	2	501.71527099609375	2	501.3157	1000.61685	-0.66176	-0.00033175	0.033858	1.6974E-05	-0.6279	-0.00031478	501.3156513053114	74.662	0.86166	75.4	75.111	75.973	0.73751					34	16	4	0	0	0	0.046478	1	28323	28323		72.968	11.61	1	12334000			27912	4193	19864	20028	27389	27389					0.11656370796958981
KVLEYVIKV	9	Unmodified	_KVLEYVIKV_					0	0	0		ENSG00000198681|ENST00000356661|MAGEA1	ENSG00000198681|ENST00000356661|MAGEA1	ENSG00000198681|ENST00000356661|MAGEA1	MULTI-MSMS	A375_MHC_IP_R1	1	546.2468872070312	2	545.847167	1089.67978	-0.61255	-0.00033436	0.31266	0.00017067	-0.29989	-0.00016369	545.8472395504739	64.964	0.50574	64.964	64.7	65.206	0					27	9	4	0	0	0	0.030766	1	23484	23484		88.364	18.032	1	6340200			27913	9298	19865	20029	27390	27390					0.13852936584976305
KVLEYVIKV	9	Unmodified	_KVLEYVIKV_					0	0	0		ENSG00000198681|ENST00000356661|MAGEA1	ENSG00000198681|ENST00000356661|MAGEA1	ENSG00000198681|ENST00000356661|MAGEA1	MULTI-MSMS	A375_MHC_IP_R2	2	364.6338195800781	3	364.23387	1089.67978	0.038189	1.391E-05	-1.842	-0.00067093	-1.8039	-0.00065703	364.23316108031406	63.894	0.60914	64.634	64.241	64.85	0.74022					14	11	2	0	0	0	0.71358	1	24259	24259		5.7834	1.9071	1	1249500			27914	9298	19865	20029	27391	27391					0.13852936584976305
KVLEYVIKV	9	Unmodified	_KVLEYVIKV_					0	0	0		ENSG00000198681|ENST00000356661|MAGEA1	ENSG00000198681|ENST00000356661|MAGEA1	ENSG00000198681|ENST00000356661|MAGEA1	MULTI-SECPEP	A375_MHC_IP_R2	2	546.2469482421875	2	545.847167	1089.67978	-0.72841	-0.0003976	-0.065753	-3.5891E-05	-0.79416	-0.00043349	545.8470472645041	63.892	0.55822	64.633	64.344	64.902	0.74022					28	10	4	0	0	0	0.011444	1	24218	24218		107.56	48.195	1	6563300			27915	9298	19865	20029	27392	27392					0.13852936584976305
KVLGIVVGV	9	Unmodified	_KVLGIVVGV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	A375_MHC_IP_R1	1	442.7019348144531	2	442.302396	882.590239	-0.091986	-4.0685E-05	0.090856	4.0186E-05	-0.0011292	-4.9945E-07	442.30237247640963	83.259	1.468	83.259	82.974	84.442	0					68	28	4	0	0	0	0.12592	2	30423	30423;30647		46.021	17.534	1	32576000			27916	3941	19866	20030	27393;27394	27393					0.14424726696279322
KVLGIVVGV	9	Unmodified	_KVLGIVVGV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	A375_MHC_IP_R2	2	442.7020568847656	2	442.302396	882.590239	-0.3829	-0.00016936	0.28749	0.00012716	-0.095401	-4.2196E-05	442.3024514586502	82.329	1.4184	83.072	82.684	84.103	0.74293					65	27	4	0	0	0	0.050162	2	31198	31198;31412		64.236	19.829	1	32110000			27917	3941	19866	20030	27395;27396	27395					0.14424726696279322
KVLGIVVGV	9	Unmodified	_KVLGIVVGV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	A375_MHC_IP_R2	2	883.0768432617188	1	883.597515	882.590239	-0.54228	-0.00047916	0.32172	0.00028427	-0.22056	-0.00019488	883.5975779161548	82.308	0.35577	83.051	82.839	83.195	0.74293					10	6	2	0	0	0	0.76827	1	31303	31303		10.824	4.1008	1	1961100			27918	3941	19866	20030	27397	27397					0.14424726696279322
KVLGIVVGV	9	Unmodified	_KVLGIVVGV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MATCH	A375_MHC_IP_R1	1		1	883.597515	882.590239	-0.24298	-0.00021469	0.65079	0.00057504	0.40782	0.00036035	883.5978124239628	83.335	0.35826	83.335	83.125	83.483	0	0.14196	0.00020302	NaN	10.824	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1974400			27919	3941	19866	20030							0.14424726696279322
KVLGRSFFW	9	Unmodified	_KVLGRSFFW_					0	0	0		nc|ENSG00000150403|Q6UWJ1-3|TMCO3;nc|ENSG00000150403|Q6UWJ1-2|TMCO3;ENSG00000150403|ENST00000434316|TMCO3	nc|ENSG00000150403|Q6UWJ1-3|TMCO3	nc|ENSG00000150403|Q6UWJ1-3|TMCO3	MULTI-MSMS	A375_MHC_IP_R1	1	380.95013427734375	3	380.550193	1138.62875	0.37164	0.00014143	0.18412	7.0065E-05	0.55576	0.00021149	380.55022627635867	79.55	0.87125	79.55	79.265	80.136	0					39	16	4	0	0	0	0.26169	1	29034	29034		33.445	8.5633	1	8171200			27920	5842	19867	20031	27398	27398					0.06498032330796377
KVLGRSFFW	9	Unmodified	_KVLGRSFFW_					0	0	0		nc|ENSG00000150403|Q6UWJ1-3|TMCO3;nc|ENSG00000150403|Q6UWJ1-2|TMCO3;ENSG00000150403|ENST00000434316|TMCO3	nc|ENSG00000150403|Q6UWJ1-3|TMCO3	nc|ENSG00000150403|Q6UWJ1-3|TMCO3	MULTI-SECPEP	A375_MHC_IP_R1	1	570.7216186523438	2	570.321651	1138.62875	-0.26573	-0.00015155	-0.23637	-0.00013481	-0.5021	-0.00028636	570.3213214550542	79.586	0.46125	79.586	79.367	79.828	0					18	8	3	0	0	0	0.63622	1	29067	29067		24.991	14.167	1	2493400			27921	5842	19867	20031	27399	27399					0.06498032330796377
KVLGRSFFW	9	Unmodified	_KVLGRSFFW_					0	0	0		nc|ENSG00000150403|Q6UWJ1-3|TMCO3;nc|ENSG00000150403|Q6UWJ1-2|TMCO3;ENSG00000150403|ENST00000434316|TMCO3	nc|ENSG00000150403|Q6UWJ1-3|TMCO3	nc|ENSG00000150403|Q6UWJ1-3|TMCO3	MULTI-MSMS	A375_MHC_IP_R2	2	380.9499206542969	3	380.550193	1138.62875	0.054199	2.0625E-05	-0.034636	-1.3181E-05	0.019563	7.4448E-06	380.55017355321587	78.544	0.76273	79.289	78.982	79.744	0.74473					28	14	3	0	0	0	0.26169	1	29802	29802		33.445	5.2113	1	7247100			27922	5842	19867	20031	27400	27400					0.06498032330796377
KVLGRSFFW	9	Unmodified	_KVLGRSFFW_					0	0	0		nc|ENSG00000150403|Q6UWJ1-3|TMCO3;nc|ENSG00000150403|Q6UWJ1-2|TMCO3;ENSG00000150403|ENST00000434316|TMCO3	nc|ENSG00000150403|Q6UWJ1-3|TMCO3	nc|ENSG00000150403|Q6UWJ1-3|TMCO3	MULTI-MATCH	A375_MHC_IP_R2	2		2	570.321651	1138.62875	-0.26115	-0.00014894	-0.3308	-0.00018866	-0.59195	-0.0003376	570.321381454389	78.508	0.45621	79.253	78.931	79.387	0.74474	-0.1664	-3.2971E-05	NaN	45.7	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3551300			27923	5842	19867	20031							0.06498032330796377
KVLGTVKWF	9	Unmodified	_KVLGTVKWF_					0	0	0		nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3;ENST00000566722.1_1_16:31580383-31580761:-|nuORF;nc|ENSG00000060138|P16989-2|YBX3;ENSG00000065978|ENST00000321358|YBX1	nc|ENSG00000060138|P16989-3|YBX3;ENSG00000065978|ENST00000321358|YBX1	nc|ENSG00000060138|P16989-3|YBX3	MULTI-SECPEP	A375_MHC_IP_R1	1	539.726318359375	2	539.326402	1076.63825	-0.431	-0.00023245	0.068148	3.6754E-05	-0.36285	-0.00019569	539.3263330059164	72.016	0.40425	72.016	71.765	72.169	0					13	7	2	0	0	0	0.16237	1	26197	26197		55.235	32.498	1	1782800			27924	1307;1398	19868	20032	27401	27401					0.10299800616326138
KVLGTVKWF	9	Unmodified	_KVLGTVKWF_					0	0	0		nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3;ENST00000566722.1_1_16:31580383-31580761:-|nuORF;nc|ENSG00000060138|P16989-2|YBX3;ENSG00000065978|ENST00000321358|YBX1	nc|ENSG00000060138|P16989-3|YBX3;ENSG00000065978|ENST00000321358|YBX1	nc|ENSG00000060138|P16989-3|YBX3	MULTI-SECPEP	A375_MHC_IP_R2	2	539.6758422851562	2	539.326402	1076.63825	-0.95232	-0.00051361	-0.71149	-0.00038373	-1.6638	-0.00089734	539.3256389040212	70.922	0.45511	71.656	71.402	71.857	0.73421					11	8	2	0	0	0	0.50484	1	26902	26902		28.495	14.588	1	2272100			27925	1307;1398	19868	20032	27402	27402					0.10299800616326138
KVLIDIREY	9	Unmodified	_KVLIDIREY_					0	0	0		ENST00000502453.1_1_5:32599051-32601187:+|nuORF;ENSG00000113387|ENST00000265073|SUB1	ENST00000502453.1_1_5:32599051-32601187:+|nuORF	ENST00000502453.1_1_5:32599051-32601187:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	383.9607849121094	3	383.560646	1147.66011	0.27803	0.00010664	-0.096352	-3.6957E-05	0.18167	6.9683E-05	383.5605493590806	60.74	0.96774	60.74	60.414	61.382	0					47	18	4	0	0	0	0.058226	1	21823	21823		61.09	35.093	1	28246000			27926	3146	19869	20033	27403	27403					0.0921856057423156
KVLIDIREY	9	Unmodified	_KVLIDIREY_					0	0	0		ENST00000502453.1_1_5:32599051-32601187:+|nuORF;ENSG00000113387|ENST00000265073|SUB1	ENST00000502453.1_1_5:32599051-32601187:+|nuORF	ENST00000502453.1_1_5:32599051-32601187:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	575.2371215820312	2	574.837331	1147.66011	-0.22301	-0.00012819	-0.12699	-7.2996E-05	-0.34999	-0.00020119	574.8372356860405	60.71	1.0189	60.71	60.363	61.382	0					53	19	4	0	0	0	0.077986	1	21821	21821		81.915	50.647	1	61714000			27927	3146	19869	20033	27404	27404					0.0921856057423156
KVLIDIREY	9	Unmodified	_KVLIDIREY_					0	0	0		ENST00000502453.1_1_5:32599051-32601187:+|nuORF;ENSG00000113387|ENST00000265073|SUB1	ENST00000502453.1_1_5:32599051-32601187:+|nuORF	ENST00000502453.1_1_5:32599051-32601187:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	383.9604797363281	3	383.560646	1147.66011	-0.46343	-0.00017775	0.43672	0.00016751	-0.026708	-1.0244E-05	383.56076198778817	59.778	0.96605	60.525	60.299	61.265	0.74714					50	18	4	0	0	0	0.032776	1	22609	22609		72.59	34.818	1	28684000			27928	3146	19869	20033	27405	27405					0.0921856057423156
KVLIDIREY	9	Unmodified	_KVLIDIREY_					0	0	0		ENST00000502453.1_1_5:32599051-32601187:+|nuORF;ENSG00000113387|ENST00000265073|SUB1	ENST00000502453.1_1_5:32599051-32601187:+|nuORF	ENST00000502453.1_1_5:32599051-32601187:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	574.703857421875	2	574.837331	1147.66011	-0.56184	-0.00032297	-0.058483	-3.3618E-05	-0.62032	-0.00035658	574.8372798831657	59.878	1.2185	60.625	60.299	61.517	0.74714					57	23	5	0	0	0	0.29257	1	22715	22715		46.022	22.233	1	50173000			27929	3146	19869	20033	27406	27406					0.0921856057423156
KVLNELYSV	9	Unmodified	_KVLNELYSV_					0	0	0		nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;ENSG00000171943|ENST00000367123|SRGAP2C;ENSG00000266028|ENST00000573034|SRGAP2	nc|ENSG00000196369|P0DMP2|SRGAP2B	nc|ENSG00000196369|P0DMP2|SRGAP2B	MULTI-SECPEP	A375_MHC_IP_R1	1	533.2024536132812	2	532.802957	1063.59136	-0.77751	-0.00041426	0.94106	0.0005014	0.16354	8.7136E-05	532.8030328880939	65.759	0.81284	65.759	65.411	66.224	0					33	15	3	0	0	0	0.09145	1	23793	23793		96.111	42.535	1	7367200			27930	7661	19870	20034	27407	27407					0.062108962745242025
KVLPDLSGW	9	Unmodified	_KVLPDLSGW_					0	0	0		ENSG00000184599|ENST00000361886|TAFA3	ENSG00000184599|ENST00000361886|TAFA3	ENSG00000184599|ENST00000361886|TAFA3	MULTI-MSMS	A375_MHC_IP_R1	1	507.6973571777344	2	507.784567	1013.55458	-0.38346	-0.00019472	-0.1439	-7.3069E-05	-0.52736	-0.00026779	507.78450224626994	93.865	0.50613	93.865	93.584	94.09	0					17	9	2	0	0	0	0.14858	1	34521	34521		41.956	26.108	1	2144000			27931	8597	19871	20035	27408	27408					0.04834644448612835
KVLPDLSGW	9	Unmodified	_KVLPDLSGW_					0	0	0		ENSG00000184599|ENST00000361886|TAFA3	ENSG00000184599|ENST00000361886|TAFA3	ENSG00000184599|ENST00000361886|TAFA3	MULTI-MSMS	A375_MHC_IP_R2	2	507.69708251953125	2	507.784567	1013.55458	-0.65999	-0.00033514	0.43091	0.00021881	-0.22909	-0.00011633	507.78467181164194	93.01	0.55766	93.749	93.443	94.001	0.73902					20	10	3	0	0	0	0.10622	1	35374	35374		49.554	17.249	1	1626100			27932	8597	19871	20035	27409	27409					0.04834644448612835
KVLPIIQRW	9	Unmodified	_KVLPIIQRW_					0	0	0		ENSG00000181555|ENST00000409792|SETD2;ENST00000431180.5_1_3:47122459-47155398:-|nuORF	ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	MULTI-SECPEP	A375_MHC_IP_R2	2	577.2660522460938	2	576.866226	1151.7179	-0.10714	-6.1806E-05	-0.5477	-0.00031595	-0.65484	-0.00037776	576.8658085153706	70.288	0.45688	71.022	70.743	71.2	0.73421					14	8	3	0	0	0	0.46045	1	26650	26650		29.082	14.243	1	2988200			27933	8351	19872	20036	27410	27410					0.1481086729031631
KVLPIIQRW	9	Unmodified	_KVLPIIQRW_					0	0	0		ENSG00000181555|ENST00000409792|SETD2;ENST00000431180.5_1_3:47122459-47155398:-|nuORF	ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	MULTI-MATCH	A375_MHC_IP_R1	1		2	576.866226	1151.7179	-0.025127	-1.4495E-05	-0.39758	-0.00022935	-0.42271	-0.00024384	576.8659040834837	71.267	0.35785	71.267	71.057	71.415	0	0.12212	0.000102	NaN	29.082	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2408700			27934	8351	19872	20036							0.1481086729031631
KVLPNDPVF	9	Unmodified	_KVLPNDPVF_					0	0	0		ENST00000505230.1_1_5:86705105-86708611:-|nuORF;ENST00000510020.5_1_5:86704942-86708611:-|nuORF;ENSG00000134480|ENST00000256897|CCNH	ENST00000505230.1_1_5:86705105-86708611:-|nuORF	ENST00000505230.1_1_5:86705105-86708611:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	515.192138671875	2	514.792392	1027.57023	0.017562	9.0406E-06	-0.50474	-0.00025984	-0.48718	-0.0002508	514.7920946866127	69.521	0.4566	69.521	69.275	69.732	0					14	8	2	0	0	0	0.17338	1	25247	25247		39.95	7.6442	1	2869700			27935	4580	19873	20037	27411	27411					0.05754930965645144
KVLPNDPVF	9	Unmodified	_KVLPNDPVF_					0	0	0		ENST00000505230.1_1_5:86705105-86708611:-|nuORF;ENST00000510020.5_1_5:86704942-86708611:-|nuORF;ENSG00000134480|ENST00000256897|CCNH	ENST00000505230.1_1_5:86705105-86708611:-|nuORF	ENST00000505230.1_1_5:86705105-86708611:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	515.1920776367188	2	514.792392	1027.57023	-0.65311	-0.00033622	-0.20558	-0.00010583	-0.85869	-0.00044205	514.7924399375967	68.63	0.50549	69.365	69.171	69.677	0.73511					17	9	2	0	0	0	0.31606	1	26008	26008		39.95	1.9757	1	2009900			27936	4580	19873	20037	27412	27412					0.05754930965645144
KVLPPLEQVW	10	Unmodified	_KVLPPLEQVW_					0	0	0		ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	MULTI-SECPEP	A375_MHC_IP_R1	1	604.5145263671875	2	604.855524	1207.69649	-0.30873	-0.00018674	0.011981	7.2466E-06	-0.29675	-0.00017949	604.8555727867727	98.385	0.66116	98.385	98.101	98.762	0					28	12	3	0	0	0	0.8866	1	36233	36233		19.362	4.5237	1	5020700			27937	4416	19874	20038	27413	27413					0.10095437470931756
KVLPPLEQVW	10	Unmodified	_KVLPPLEQVW_					0	0	0		ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	MULTI-SECPEP	A375_MHC_IP_R2	2	605.2557373046875	2	604.855524	1207.69649	-0.58106	-0.00035146	0.34003	0.00020567	-0.24103	-0.00014579	604.8556679954552	97.462	0.91678	98.217	97.923	98.84	0.75586					36	17	4	0	0	0	0.15413	1	36962	36962		67.838	47.385	1	5725500			27938	4416	19874	20038	27414	27414					0.10095437470931756
KVLPVGVLY	9	Unmodified	_KVLPVGVLY_					0	0	0		ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	MULTI-MSMS	A375_MHC_IP_R1	1	494.2914123535156	2	494.315503	986.616454	-0.56533	-0.00027945	0.067954	3.3591E-05	-0.49738	-0.00024586	494.3155310852508	85.47	0.4058	85.47	85.261	85.667	0					11	7	2	0	0	0	0.25276	1	31308	31308		34.102	17.16	1	1636200			27939	5865	19875	20039	27415	27415					0.12260995867745805
KVLPVGVLY	9	Unmodified	_KVLPVGVLY_					0	0	0		ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	MULTI-SECPEP	A375_MHC_IP_R2	2	493.650634765625	2	494.315503	986.616454	-0.38236	-0.00018901	1.6461	0.00081368	1.2637	0.00062467	494.31557852847885	84.572	0.35315	85.308	85.069	85.422	0.73602					14	6	3	0	0	0	0.65246	1	32146	32146		21.747	19.687	1	1329300			27940	5865	19875	20039	27416	27416					0.12260995867745805
KVLQGLIEV	9	Unmodified	_KVLQGLIEV_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-SECPEP	A375_MHC_IP_R1	1	500.2155456542969	2	499.815867	997.617182	-0.214	-0.00010696	0.28357	0.00014173	0.069568	3.4771E-05	499.8159580915878	82.45	0.50888	82.45	82.214	82.722	0					18	9	3	0	0	0	0.13064	1	30177	30177		47.749	5.9091	1	2277400			27941	6889	19876	20040	27417	27417					0.11827790516804271
KVLQGLIEV	9	Unmodified	_KVLQGLIEV_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-SECPEP	A375_MHC_IP_R2	2	500.2155456542969	2	499.815867	997.617182	-0.64256	-0.00032116	0.26353	0.00013172	-0.37903	-0.00018945	499.81595369926737	81.461	0.40232	82.204	81.979	82.381	0.74293					13	7	2	0	0	0	0.083712	1	30960	30960		56.177	0	1	2881000			27942	6889	19876	20040	27418	27418					0.11827790516804271
KVLQILFV	8	Unmodified	_KVLQILFV_					0	0	0			REV__nc|ENSG00000211806|A0A0B4J276|TRAV25	REV__nc|ENSG00000211806|A0A0B4J276|TRAV25	MULTI-MSMS	A375_MHC_IP_R1	1	480.7186584472656	2	480.318046	958.621539	-0.23573	-0.00011323	0.10267	4.9312E-05	-0.13307	-6.3915E-05	480.3180708054927	117.65	0.45749	117.65	117.36	117.82	0					14	8	2	0	0	0	0.5503	1	43221	43221		46.921	4.8263	1	6774100	+		27943	27478	19877	20041	27419	27419					0.14057299730382056
KVLRAVHSLL	10	Unmodified	_KVLRAVHSLL_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.T2707Mfs*5|1|0.21|ENSG00000196367|chr7:98976664-98976688|CGCTGATGTTGGAGCACCAGGCTTT/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MSMS	A375_MHC_IP_R2	2	568.4323120117188	2	568.369133	1134.72371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.78	1	148.8	148.3	149.3	0.018707								0	0	0	0.15591	1	57770	57770		1.6526	0	1				27944	9031	19878	20042	27420	27420					0.1617396580197692
KVLSGKLHVV	10	Unmodified	_KVLSGKLHVV_					0	0	0			REV__ENSG00000166825|ENST00000300060|ANPEP	REV__ENSG00000166825|ENST00000300060|ANPEP	MULTI-MSMS	A375_MHC_IP_R2	2	360.9762878417969	3	360.569365	1078.68626	-0.94037	-0.00033907	-1.921	-0.00069265	-2.8614	-0.0010317	360.9029009328853	28.9	1.2512	29.598	29.183	30.434	0.69872					62	24	3	0	0	0	0.42311	1	10165	10165		22.775	0	1	14456000	+		27945	20704	19879	20043	27421	27421					0.15006874536356918
KVLSKEFHL	9	Unmodified	_KVLSKEFHL_					0	0	0		nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;SET|p.D163*|1|0.21|ENSG00000119335|chr9:128692935-128692936|-/T|frameshift_variant	nc|ENSG00000119335|Q01105-3|SET	nc|ENSG00000119335|Q01105-3|SET	MULTI-MSMS	A375_MHC_IP_R1	1	367.95367431640625	3	367.553603	1099.63898	0.2732	0.00010042	0.20413	7.5028E-05	0.47733	0.00017544	367.5536466639481	37.681	0.76461	37.681	37.454	38.218	0					34	14	4	0	0	0	0.0095341	1	12722	12722		96.936	54.623	1	19466000			27946	3585	19880	20044	27422	27422					0.09314595265368553
KVLSKEFHL	9	Unmodified	_KVLSKEFHL_					0	0	0		nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;SET|p.D163*|1|0.21|ENSG00000119335|chr9:128692935-128692936|-/T|frameshift_variant	nc|ENSG00000119335|Q01105-3|SET	nc|ENSG00000119335|Q01105-3|SET	MULTI-MSMS	A375_MHC_IP_R2	2	367.95343017578125	3	367.553603	1099.63898	-0.19484	-7.1613E-05	0.26399	9.703E-05	0.069151	2.5417E-05	367.55364007996513	36.567	0.71099	37.338	37.056	37.767	0.7709					33	13	4	0	0	0	0.012447	1	13317	13317		93.166	56.091	1	15918000			27947	3585	19880	20044	27423	27423					0.09314595265368553
KVLSSREDKD	10	Unmodified	_KVLSSREDKD_					0	0	0		nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST	nc|ENSG00000151914|Q03001|DST	nc|ENSG00000151914|Q03001|DST	MSMS	A375_MHC_IP_R1	1	392.9326477050781	3	392.878815	1175.61462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.151	1	26.151	25.651	26.651	0								0	0	0	0.15288	1	7754	7754		7.0371	0.40671	1				27948	5934	19881	20045	27424	27424					0.03383290321175991
KVLTGTTYSP	10	Unmodified	_KVLTGTTYSP_					0	0	0		ENST00000481710.5_1_21:35757936-35774391:+|nuORF;ENST00000495363.5_1_21:35757936-35777047:+|nuORF;ENST00000489469.5_1_21:35757936-35772344:+|nuORF	ENST00000481710.5_1_21:35757936-35774391:+|nuORF	ENST00000481710.5_1_21:35757936-35774391:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	534.1561279296875	2	533.792589	1065.57063	-0.80209	-0.00042815	0.43642	0.00023296	-0.36566	-0.00019519	533.7932878559407	27.187	0.55451	27.187	26.928	27.482	0					17	10	3	0	0	0	0.88918	1	8129	8129		13.042	2.2185	1	2977000			27949	12517	19882	20046	27425	27425					0.04046305894826219
KVLVIPTAP	9	Unmodified	_KVLVIPTAP_					0	0	0			REV__ENST00000486616.5_1_3:38045275-38047830:+|nuORF	REV__ENST00000486616.5_1_3:38045275-38047830:+|nuORF	MSMS	A375_MHC_IP_R2	2	469.63653564453125	2	469.307678	936.600803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.377	1	18.98	18.48	19.48	0.60308								0	0	0	0.15486	1	5463	5463		0.52476	0	1		+		27950	25324	19883	20047	27426	27426					0.12996709350682067
KVMGTFSTV	9	Oxidation (M)	_KVM(Oxidation (M))GTFSTV_		KVM(1)GTFSTV		KVM(46)GTFSTV	0	0	1		ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	MULTI-SECPEP	A375_MHC_IP_R1	1	493.6543273925781	2	493.254785	984.495018	-0.37428	-0.00018462	-0.12905	-6.3654E-05	-0.50333	-0.00024827	493.25472278649687	34.129	0.4034	34.129	33.95	34.353	0					14	7	2	0	0	0	0.24324	1	11248	11248		45.7	9.5726	1	5179200			27951	8448	19884	20048	27427	27427		406			0.002150054429307602
KVMGTFSTV	9	Unmodified	_KVMGTFSTV_					0	0	0		ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	MULTI-SECPEP	A375_MHC_IP_R2	2	485.6566467285156	2	485.257328	968.500103	-0.52179	-0.0002532	0.17948	8.7093E-05	-0.34231	-0.00016611	485.25729014311077	48.152	0.70445	48.913	48.631	49.336	0.76082					23	13	2	0	0	0	0.24324	1	18093	18093		45.7	9.6554	1	2396200			27952	8448	19884	20049	27428	27428					0.014593093055509598
KVMPQNHSF	9	Unmodified	_KVMPQNHSF_					0	0	0		ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	MULTI-MSMS	A375_MHC_IP_R1	1	544.6708984375	2	544.271301	1086.52805	-0.86253	-0.00046945	-0.074431	-4.0511E-05	-0.93696	-0.00050996	544.2714589951231	23.508	0.35688	23.508	23.33	23.687	0					12	6	3	0	0	0	0.001114	1	6479	6479		152.89	123.8	1	9588800			27953	3641	19885	20050	27429	27429					-0.011753677143815366
KVMPQNHSF	9	Unmodified	_KVMPQNHSF_					0	0	0		ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	MULTI-MSMS	A375_MHC_IP_R2	2	544.6704711914062	2	544.271301	1086.52805	-1.1458	-0.00062365	-0.016912	-9.2049E-06	-1.1628	-0.00063286	544.2712174418648	21.202	0.45501	21.822	21.473	21.928	0.61932					13	8	2	0	0	0	0.014789	1	6622	6622		90.135	73.022	1	1853000			27954	3641	19885	20050	27430	27430					-0.011753677143815366
KVNDILELY	9	Unmodified	_KVNDILELY_					0	0	0		ENST00000495407.1_1_10:121602688-121616909:-|nuORF;nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP	ENST00000495407.1_1_10:121602688-121616909:-|nuORF	ENST00000495407.1_1_10:121602688-121616909:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	554.20751953125	2	553.808239	1105.60193	-0.72319	-0.00040051	-0.74632	-0.00041332	-1.4695	-0.00081383	553.8078544034636	91.174	0.60757	91.174	90.794	91.401	0					19	11	2	0	0	0	0.14659	1	33506	33506		53.833	2.203	1	2742300			27955	9193	19886	20051	27431	27431					0.05334878928965736
KVNDILELY	9	Unmodified	_KVNDILELY_					0	0	0		ENST00000495407.1_1_10:121602688-121616909:-|nuORF;nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP	ENST00000495407.1_1_10:121602688-121616909:-|nuORF	ENST00000495407.1_1_10:121602688-121616909:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	553.808239	1105.60193	-0.67457	-0.00037358	0.054808	3.0353E-05	-0.61977	-0.00034323	553.8078303345529	90.416	0.91685	91.151	90.496	91.413	0.7345	-0.01131	0.00073136	NaN	53.833	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1935800			27956	9193	19886	20051							0.05334878928965736
KVNGKGSLW	9	Unmodified	_KVNGKGSLW_					0	0	0		nc|ENSG00000170802|P32314-2|FOXN2;ENSG00000170802|ENST00000340553|FOXN2	nc|ENSG00000170802|P32314-2|FOXN2	nc|ENSG00000170802|P32314-2|FOXN2	MULTI-SECPEP	A375_MHC_IP_R1	1	495.1820983886719	2	494.782359	987.550165	-0.44497	-0.00022016	-0.002476	-1.2251E-06	-0.44745	-0.00022139	494.78227678726955	28.231	0.50406	28.231	28.088	28.592	0					25	9	3	0	0	0	0.05755	1	8697	8697		71.134	38.828	1	15622000			27957	7541	19887	20052	27432	27432					0.05589180025708629
KVNGKGSLW	9	Unmodified	_KVNGKGSLW_					0	0	0		nc|ENSG00000170802|P32314-2|FOXN2;ENSG00000170802|ENST00000340553|FOXN2	nc|ENSG00000170802|P32314-2|FOXN2	nc|ENSG00000170802|P32314-2|FOXN2	MULTI-MSMS	A375_MHC_IP_R2	2	495.1820983886719	2	494.782359	987.550165	-0.52667	-0.00026059	0.096902	4.7945E-05	-0.42977	-0.00021264	494.7823761295411	27.122	1.1198	27.801	27.484	28.604	0.67857					57	21	6	0	0	0	0.073067	1	9454	9454		55.503	19.376	1	76141000			27958	7541	19887	20052	27433	27433					0.05589180025708629
KVNLKYDSW	9	Unmodified	_KVNLKYDSW_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	A375_MHC_IP_R1	1	577.2054443359375	2	576.806031	1151.59751	-0.1129	-6.5119E-05	-0.54838	-0.00031631	-0.66127	-0.00038143	576.8056767376165	46.119	0.30444	46.119	45.941	46.245	0					8	5	2	0	0	0	0.26374	1	16188	16188		40.725	29.925	1	4268900			27959	9114	19888	20053	27434	27434					0.02777414506022069
KVNLKYDSW	9	Unmodified	_KVNLKYDSW_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	A375_MHC_IP_R2	2	576.6880493164062	2	576.806031	1151.59751	-0.24071	-0.00013884	-0.58154	-0.00033543	-0.82225	-0.00047428	576.805369698293	45.248	0.2523	46.013	45.846	46.099	0.76519					10	4	3	0	0	0	0.65623	1	16872	16872		23.79	11.549	1	2657500			27960	9114	19888	20053	27435	27435					0.02777414506022069
KVNPIFHHW	9	Unmodified	_KVNPIFHHW_					0	0	0		nc|ENSG00000188766|Q2MJR0-2|SPRED3;ENSG00000188766|ENST00000691638|SPRED3	nc|ENSG00000188766|Q2MJR0-2|SPRED3	nc|ENSG00000188766|Q2MJR0-2|SPRED3	MSMS	A375_MHC_IP_R1	1	393.28143310546875	3	393.213692	1176.61925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.035	1	40.035	39.535	40.535	0								0	0	0	0.1008	1	13730	13730		41.84	27.434	1				27961	8932	19889	20054	27436	27436					0.03800264045253243
KVNVDIINF	9	Unmodified	_KVNVDIINF_					0	0	0		ENSG00000159352|ENST00000368884|PSMD4;nc|ENSG00000159352|P55036-2|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF	ENSG00000159352|ENST00000368884|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL	nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-SECPEP	A375_MHC_IP_R1	1	531.7025756835938	2	531.303124	1060.5917	-0.75238	-0.00039974	-0.028545	-1.5166E-05	-0.78092	-0.00041491	531.3032008617258	90.237	0.45609	90.237	89.981	90.437	0					19	8	3	0	0	0	0.32966	1	33160	33160		62.573	2.4988	1	2141700			27962	12500;6368	19890	20055	27437	27437					0.06382315994369492
KVNVIQVPG	9	Unmodified	_KVNVIQVPG_					0	0	0			REV__nc|ENSG00000157106|Q96Q15-2|SMG1	REV__nc|ENSG00000157106|Q96Q15-2|SMG1	MULTI-SECPEP	A375_MHC_IP_R1	1	477.6923522949219	2	477.292559	952.570566	-0.55156	-0.00026326	0.12166	5.8066E-05	-0.4299	-0.00020519	477.29257365223225	28.294	0.45354	28.294	28.088	28.541	0					21	8	3	0	0	0	0.43707	1	8707	8707		28.487	10.352	1	6900400	+		27963	20012	19891	20056	27438	27438					0.09238350685518526
KVNVIQVPG	9	Unmodified	_KVNVIQVPG_					0	0	0			REV__nc|ENSG00000157106|Q96Q15-2|SMG1	REV__nc|ENSG00000157106|Q96Q15-2|SMG1	MULTI-MSMS	A375_MHC_IP_R2	2	477.6922912597656	2	477.292559	952.570566	-0.53185	-0.00025385	-0.033317	-1.5902E-05	-0.56517	-0.00026975	477.2925047352391	27.698	0.50596	28.376	28.149	28.655	0.67857					20	9	3	0	0	0	0.25276	1	9481	9481		34.102	10.954	1	6484500	+		27964	20012	19891	20056	27439	27439					0.09238350685518526
KVNVIQVPG	9	Unmodified	_KVNVIQVPG_					0	0	0			REV__nc|ENSG00000157106|Q96Q15-2|SMG1	REV__nc|ENSG00000157106|Q96Q15-2|SMG1	MULTI-SECPEP	A375_MHC_IP_R2	2	476.6575012207031	2	477.292559	952.570566	-0.53185	-0.00025385	-0.033317	-1.5902E-05	-0.56517	-0.00026975	477.2925047352391	27.698	0.50596	28.376	28.149	28.655	0.67857					20	9	3	0	0	0	0.58271	1	9530	9530		20.454	7.9221	1	6484500	+		27965	20012	19891	20056	27440	27440					0.09238350685518526
KVNVVLQNF	9	Unmodified	_KVNVVLQNF_					0	0	0		ENSG00000198301|ENST00000356260|SDAD1;nc|ENSG00000198301|Q9NVU7-2|SDAD1;ENST00000395710.5_1_4:76871905-76902632:-|nuORF;ENST00000515836.5_1_4:76896898-76898807:-|nuORF	ENSG00000198301|ENST00000356260|SDAD1	ENSG00000198301|ENST00000356260|SDAD1	MULTI-SECPEP	A375_MHC_IP_R2	2	531.2102661132812	2	530.811116	1059.60768	-0.61786	-0.00032797	-0.73775	-0.00039161	-1.3556	-0.00071957	530.8103639764012	67.43	0.50961	68.166	67.9	68.41	0.73631					15	9	2	0	0	0	0.39388	1	25583	25583		39.957	20.7	1	1502200			27966	9253	19892	20057	27441	27441					0.08026022231297247
KVPANPASV	9	Unmodified	_KVPANPASV_					0	0	0		ENSG00000088888|ENST00000428216|MAVS;nc|ENSG00000088888|Q7Z434-4|MAVS	ENSG00000088888|ENST00000428216|MAVS	ENSG00000088888|ENST00000428216|MAVS	MULTI-SECPEP	A375_MHC_IP_R1	1	441.6040344238281	2	441.75581	881.497067	-0.41855	-0.0001849	-0.040454	-1.7871E-05	-0.45901	-0.00020277	441.7556477030938	26.392	0.55784	26.392	26.17	26.728	0					23	10	3	0	0	0	0.056023	1	7865	7865		75.761	33.666	1	9755000			27967	1903	19893	20058	27442	27442					0.05157802243036258
KVPANPASV	9	Unmodified	_KVPANPASV_					0	0	0		ENSG00000088888|ENST00000428216|MAVS;nc|ENSG00000088888|Q7Z434-4|MAVS	ENSG00000088888|ENST00000428216|MAVS	ENSG00000088888|ENST00000428216|MAVS	MULTI-SECPEP	A375_MHC_IP_R2	2	442.1553955078125	2	441.75581	881.497067	-0.797	-0.00035208	0.32654	0.00014425	-0.47046	-0.00020783	441.75588238957437	25.742	0.61107	26.402	26.194	26.805	0.65992					23	11	3	0	0	0	0.16764	1	8631	8631		51.63	15.586	1	7323700			27968	1903	19893	20058	27443	27443					0.05157802243036258
KVPEIEVTV	9	Unmodified	_KVPEIEVTV_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-SECPEP	A375_MHC_IP_R2	2	507.13482666015625	2	507.297507	1012.58046	-0.742	-0.00037642	0.68284	0.0003464	-0.059162	-3.0013E-05	507.2976008380421	67.365	0.81294	68.102	67.648	68.461	0.73631					51	15	5	0	0	0	0.10362	1	25550	25550		63.961	2.6031	1	7957800			27969	9951	19894	20059	27444	27444					0.07467493900242061
KVPELIRTI	9	Unmodified	_KVPELIRTI_					0	0	0		nc|ENSG00000087088|Q07812-6|BAX;nc|ENSG00000087088|Q07812-4|BAX;nc|ENSG00000087088|Q07812-7|BAX;nc|ENSG00000087088|Q07812-8|BAX;ENST00000513545.5_1_19:49458896-49464890:+|nuORF;ENSG00000087088|ENST00000345358|BAX;nc|ENSG00000087088|Q07812-2|BAX	nc|ENSG00000087088|Q07812-6|BAX	nc|ENSG00000087088|Q07812-6|BAX	MULTI-SECPEP	A375_MHC_IP_R1	1	535.2421264648438	2	534.842416	1067.67028	-0.73154	-0.00039126	0.83362	0.00044586	0.10208	5.4598E-05	534.842609540627	58.209	0.55753	58.209	57.923	58.481	0					27	10	3	0	0	0	0.72623	1	20890	20890		9.544	4.647	1	6483900			27970	1856	19895	20060	27445	27445					0.13915168299490688
KVPEWVDTV	9	Unmodified	_KVPEWVDTV_					0	0	0		ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1869506835938	2	536.787307	1071.56006	-0.81252	-0.00043615	0.75284	0.00040412	-0.059678	-3.2035E-05	536.7871169340766	70.084	0.76213	70.818	70.54	71.302	0.73421					21	14	2	0	0	0	0.49205	1	26562	26562		34.402	1.616	1	3799200			27971	2594	19896	20061	27446	27446					0.027143232404114315
KVPKLRMKE	9	Unmodified	_KVPKLRMKE_					0	0	0			REV__RYR3|p.E822K|1|0.49|ENSG00000198838|chr15:33623913-33623913|G/A|missense_variant	REV__RYR3|p.E822K|1|0.49|ENSG00000198838|chr15:33623913-33623913|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	376.9330749511719	3	376.902238	1127.68488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.133	1	32.869	32.369	33.369	0.73692								0	0	0	0.15486	1	11406	11406		5.2969	0	1		+		27972	27904	19897	20062	27447	27447					0.12614917175960727
KVPQLEIVPN	10	Unmodified	_KVPQLEIVPN_					0	0	0		CON__P02662	CON__P02662	CON__P02662	MULTI-SECPEP	A375_MHC_IP_R1	1	569.1953735351562	2	568.837331	1135.66011	-0.25927	-0.00014749	0.2311	0.00013146	-0.028178	-1.6029E-05	568.8374689476943	68.761	0.40392	68.761	68.616	69.02	0					11	7	2	0	0	0	0.83447	1	24961	24961		18.373	0	1	1586000		+	27973	581	19898	20063	27448	27448					0.09770560574224874
KVPTFVRML	9	Unmodified	_KVPTFVRML_					0	0	0		ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	MULTI-MSMS	A375_MHC_IP_R1	1	364.6198425292969	3	364.219567	1089.63687	0.27233	9.919E-05	0.22089	8.0453E-05	0.49323	0.00017964	364.21958782181684	70.825	0.61365	70.825	70.494	71.108	0					18	11	2	0	0	0	0.16945	1	25733	25733		40.239	31.263	1	3384100			27974	7866	19899	20064	27449	27449					0.09563843255909887
KVPTFVRML	9	Unmodified	_KVPTFVRML_					0	0	0		ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	MULTI-SECPEP	A375_MHC_IP_R1	1	546.2254638671875	2	545.825712	1089.63687	-0.46381	-0.00025316	-1.6914	-0.00092319	-2.1552	-0.0011764	545.825863592299	70.86	0.56224	70.86	70.545	71.108	0					33	10	5	0	0	0	0.59098	1	25714	25714		27.629	16.805	1	6299300			27975	7866	19899	20064	27450	27450					0.09563843255909887
KVPTFVRML	9	Unmodified	_KVPTFVRML_					0	0	0		ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	MULTI-MSMS	A375_MHC_IP_R2	2	364.6195068359375	3	364.219567	1089.63687	0.048618	1.7708E-05	0.29653	0.000108	0.34515	0.00012571	364.21958498195556	69.882	0.66105	70.616	70.233	70.895	0.73421					25	12	3	0	0	0	0.095851	1	26462	26462		51.415	42.67	1	4168800			27976	7866	19899	20064	27451	27451					0.09563843255909887
KVPTFVRML	9	Unmodified	_KVPTFVRML_					0	0	0		ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	MULTI-SECPEP	A375_MHC_IP_R2	2	546.1215209960938	2	545.825712	1089.63687	-0.72264	-0.00039444	-1.5472	-0.00084451	-2.2699	-0.0012389	545.8258768864979	69.898	0.71239	70.632	70.233	70.946	0.73421					38	13	4	0	0	0	0.5212	1	26453	26453		26.268	14.628	1	4659200			27977	7866	19899	20064	27452	27452					0.09563843255909887
KVPVGQKVEG	10	Unmodified	_KVPVGQKVEG_					0	0	0		SLC1A5|p.E225K|1|0.17|ENSG00000105281|chr19:46782534-46782534|C/T|missense_variant	SLC1A5|p.E225K|1|0.17|ENSG00000105281|chr19:46782534-46782534|C/T|missense_variant	SLC1A5|p.E225K|1|0.17|ENSG00000105281|chr19:46782534-46782534|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	520.1491088867188	2	520.808574	1039.60259	-0.57905	-0.00030157	-0.24046	-0.00012523	-0.81951	-0.00042681	520.808315978305	27.476	0.50655	28.155	27.945	28.452	0.67857					15	9	2	0	0	0	0.93594	1	9397	9397		2.4985	2.4985	1	3173700			27978	29170	19900	20065	27453	27453					0.08437718368668357
KVQDFQGNLW	10	Unmodified	_KVQDFQGNLW_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	A375_MHC_IP_R2	2	618.2141723632812	2	617.814387	1233.61422	-0.65918	-0.00040725	-1.1873	-0.00073356	-1.8465	-0.0011408	617.8141104701303	73.936	0.71317	74.674	74.296	75.009	0.73751					18	13	2	0	0	0	0.32528	2	28071	28038;28071		38.615	13.656	1	2104000			27979	3357	19901	20066	27454;27455	27455					0.006759153920029348
KVQDITMQW	9	Unmodified	_KVQDITMQW_					0	0	0		nc|ENSG00000119392|Q53GS7-2|GLE1;ENSG00000119392|ENST00000309971|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	MULTI-SECPEP	A375_MHC_IP_R1	1	575.192138671875	2	574.792066	1147.56958	-0.048341	-2.7786E-05	0.060866	3.4985E-05	0.012526	7.1997E-06	574.7918245713245	72.44	0.71008	72.44	72.069	72.779	0					16	13	2	0	0	0	0.11711	1	26335	26335		60.074	25.971	1	2772600			27980	3587	19902	20067	27456	27456					0.0016976825429537712
KVQDITMQW	9	Oxidation (M)	_KVQDITM(Oxidation (M))QW_		KVQDITM(1)QW		KVQDITM(48)QW	0	0	1		nc|ENSG00000119392|Q53GS7-2|GLE1;ENSG00000119392|ENST00000309971|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	MULTI-SECPEP	A375_MHC_IP_R2	2	582.6559448242188	2	582.789524	1163.56449	-0.71205	-0.00041498	1.6626	0.00096896	0.95058	0.00055399	582.7898973865113	51.938	0.6604	52.69	52.423	53.083	0.75225					16	12	2	0	0	0	0.31606	1	19666	19666		47.749	25.012	1	1351900			27981	3587	19902	20068	27457	27457		184			-0.010745356083134538
KVQGPNLW	8	Unmodified	_KVQGPNLW_					0	0	0		ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33;nc|ENSG00000077254|Q8TEY7-3|USP33;ENST00000528150.1_1_1:78206598-78225465:-|nuORF	ENSG00000077254|ENST00000370794|USP33	ENSG00000077254|ENST00000370794|USP33	MSMS	A375_MHC_IP_R1	1	471.180908203125	2	471.263802	940.513051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.99	1	55.99	55.49	56.49	0								0	0	0	0.16876	1	20044	20044		28.487	3.813	1				27982	1651	19903	20069	27458	27458					0.04041508479940603
KVQLLLLIPV	10	Unmodified	_KVQLLLLIPV_					0	0	0			REV__nc|ENSG00000165131|Q96L11-2|LLCFC1	REV__nc|ENSG00000165131|Q96L11-2|LLCFC1	MSMS	A375_MHC_IP_R1	1	379.26654052734375	3	379.265282	1134.77402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.679	1	29.679	29.179	30.179	0								0	0	0	0.1562	1	9333	9333		0.69767	0	1		+		27983	20551	19904	20070	27459	27459					0.21202075407131815
KVQRFYVY	8	Unmodified	_KVQRFYVY_					0	0	0			REV__ENST00000460087.1_1_22:50755275-50757393:-|nuORF	REV__ENST00000460087.1_1_22:50755275-50757393:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	368.6064758300781	3	368.206315	1101.59712	0.19871	7.3165E-05	-0.41106	-0.00015135	-0.21235	-7.8188E-05	368.2064279787538	64.972	0.9162	64.972	64.546	65.462	0					31	17	3	0	0	0	0.77603	1	23552	23552		6.7232	0.51738	1	2064500	+		27984	22576	19905	20071	27460	27460					0.05038039576857045
KVRAELERW	9	Unmodified	_KVRAELERW_					0	0	0		nc|ENSG00000163681|Q14BN4-2|SLMAP;nc|ENSG00000163681|Q14BN4-3|SLMAP;nc|ENSG00000163681|Q14BN4|SLMAP;ENSG00000163681|ENST00000671191|SLMAP;nc|ENSG00000163681|Q14BN4-8|SLMAP;nc|ENSG00000163681|Q14BN4-5|SLMAP;nc|ENSG00000163681|Q14BN4-4|SLMAP	nc|ENSG00000163681|Q14BN4-2|SLMAP	nc|ENSG00000163681|Q14BN4-2|SLMAP	MULTI-MSMS	A375_MHC_IP_R2	2	396.5957336425781	3	396.22789	1185.66184	-0.49338	-0.00019549	0.50083	0.00019844	0.0074519	2.9527E-06	396.2280905834762	28.354	0.20276	29.033	28.909	29.112	0.67857					10	3	4	0	0	0	0.70902	1	9740	9740		6.1918	0.78914	1	5059100			27985	6706	19906	20072	27461	27461					0.07643614382845954
KVRAESFDTW	10	Unmodified	_KVRAESFDTW_					0	0	0		nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;ENST00000497100.5_1_X:53227940-53240837:-|nuORF	nc|ENSG00000126012|P41229-2|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	MULTI-SECPEP	A375_MHC_IP_R2	2	413.94366455078125	3	413.543655	1237.60914	0.19363	8.0073E-05	-0.27691	-0.00011451	-0.083281	-3.444E-05	413.5434347035753	43.608	0.55495	44.379	44.179	44.734	0.77089					19	10	3	0	0	0	0.61782	1	16265	16265		36.395	22.78	1	2302700			27986	4020	19907	20073	27462	27462					-0.0001638847061258275
KVRDPRPW	8	Unmodified	_KVRDPRPW_					0	0	0		nc|ENSG00000147804|Q6P5W5-2|SLC39A4;ENSG00000147804|ENST00000301305|SLC39A4;ENST00000529462.5_1_8:145637924-145638077:-|nuORF;ENST00000527148.5_1_8:145635301-145638951:-|nuORF	nc|ENSG00000147804|Q6P5W5-2|SLC39A4	nc|ENSG00000147804|Q6P5W5-2|SLC39A4	MULTI-MSMS	A375_MHC_IP_R1	1	352.2699279785156	3	351.869926	1052.58795	-0.38431	-0.00013523	0.10698	3.7643E-05	-0.27733	-9.7584E-05	351.86995943330754	23.456	0.8149	23.456	23.227	24.042	0					34	15	4	0	0	0	0.16812	1	6444	6444		74.2	48.179	1	31917000			27987	5706	19908	20074	27463	27463					0.06375691011180606
KVRDPRPW	8	Unmodified	_KVRDPRPW_					0	0	0		nc|ENSG00000147804|Q6P5W5-2|SLC39A4;ENSG00000147804|ENST00000301305|SLC39A4;ENST00000529462.5_1_8:145637924-145638077:-|nuORF;ENST00000527148.5_1_8:145635301-145638951:-|nuORF	nc|ENSG00000147804|Q6P5W5-2|SLC39A4	nc|ENSG00000147804|Q6P5W5-2|SLC39A4	MULTI-MSMS	A375_MHC_IP_R2	2	352.2698059082031	3	351.869926	1052.58795	-0.56549	-0.00019898	0.15478	5.4462E-05	-0.41071	-0.00014452	351.8700053177232	21.051	0.75983	21.67	21.118	21.878	0.61932					31	14	3	0	0	0	0.76876	1	6543	6543		15.248	8.1468	1	3559600			27988	5706	19908	20074	27464	27464					0.06375691011180606
KVRDPRPW	8	Unmodified	_KVRDPRPW_					0	0	0		nc|ENSG00000147804|Q6P5W5-2|SLC39A4;ENSG00000147804|ENST00000301305|SLC39A4;ENST00000529462.5_1_8:145637924-145638077:-|nuORF;ENST00000527148.5_1_8:145635301-145638951:-|nuORF	nc|ENSG00000147804|Q6P5W5-2|SLC39A4	nc|ENSG00000147804|Q6P5W5-2|SLC39A4	MULTI-MSMS	A375_MHC_IP_R2	2	352.26971435546875	3	351.869926	1052.58795	-0.57907	-0.00020376	0.15547	5.4705E-05	-0.4236	-0.00014905	351.8699685877646	22.497	0.66431	23.124	22.702	23.366	0.62767					20	12	2	0	0	0	0.57889	1	7139	7139		45.74	34.245	1	4109400			27989	5706	19908	20074	27465	27465					0.06375691011180606
KVRDPRPW	8	Unmodified	_KVRDPRPW_					0	0	0		nc|ENSG00000147804|Q6P5W5-2|SLC39A4;ENSG00000147804|ENST00000301305|SLC39A4;ENST00000529462.5_1_8:145637924-145638077:-|nuORF;ENST00000527148.5_1_8:145635301-145638951:-|nuORF	nc|ENSG00000147804|Q6P5W5-2|SLC39A4	nc|ENSG00000147804|Q6P5W5-2|SLC39A4	MULTI-MSMS	A375_MHC_IP_R2	2	352.2694396972656	3	351.869926	1052.58795	-0.55176	-0.00019415	-0.59654	-0.00020991	-1.1483	-0.00040405	351.8696558987426	23.273	0.45468	23.903	23.675	24.129	0.63014					15	8	3	0	0	0	0.74543	1	7471	7471		21.537	10.737	1	4222400			27990	5706	19908	20074	27466	27466					0.06375691011180606
KVREIIQKL	9	Unmodified	_KVREIIQKL_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3	nc|ENSG00000102024|P13797-3|PLS3	nc|ENSG00000102024|P13797-3|PLS3	MULTI-MSMS	A375_MHC_IP_R2	2	376.6358642578125	3	376.248403	1125.72338	-0.56699	-0.00021333	0.21781	8.1952E-05	-0.34917	-0.00013138	376.2484334449969	29.031	1.3047	29.73	29.434	30.739	0.69872					74	25	4	0	0	0	0.46465	1	9967	9967		21.537	7.1316	1	99201000			27991	2350	19909	20075	27467	27467					0.16554546082124943
KVRELELVY	9	Unmodified	_KVRELELVY_					0	0	0		ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	MULTI-MSMS	A375_MHC_IP_R1	1	383.960693359375	3	383.560646	1147.66011	0.32969	0.00012645	0.38113	0.00014619	0.71081	0.00027264	383.5607968997736	54.744	0.71058	54.744	54.415	55.126	0					40	13	4	0	0	0	0.41856	1	19520	19520		23.801	5.428	1	19133000			27992	1018	19910	20076	27468	27468					0.09218560574208823
KVRELELVY	9	Unmodified	_KVRELELVY_					0	0	0		ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	MULTI-SECPEP	A375_MHC_IP_R2	2	575.2373046875	2	574.837331	1147.66011	-0.64727	-0.00037207	-0.083956	-4.8261E-05	-0.73122	-0.00042033	574.8373492128156	53.746	0.56546	54.497	54.249	54.815	0.75105					26	10	3	0	0	0	0.27742	1	20274	20274		29.841	0	1	9759600			27993	1018	19910	20076	27469	27469					0.09218560574208823
KVRESERAFTY	11	Unmodified	_KVRESERAFTY_					0	0	0		nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9;nc|ENSG00000101194|Q9BYT1-3|SLC17A9;ENST00000488738.5_1_20:61584086-61594126:+|nuORF	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MULTI-MSMS	A375_MHC_IP_R1	1	462.9768981933594	3	462.577247	1384.70991	-0.49795	-0.00023034	0.055105	2.549E-05	-0.44284	-0.00020485	462.5771594978185	23.813	0.456	23.813	23.687	24.143	0					10	8	2	0	0	0	0.60387	1	6650	6650		23.016	13.772	1	6517000			27994	2270	19911	20077	27470	27470					0.03294643512231232
KVRESERAFTY	11	Unmodified	_KVRESERAFTY_					0	0	0		nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9;nc|ENSG00000101194|Q9BYT1-3|SLC17A9;ENST00000488738.5_1_20:61584086-61594126:+|nuORF	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MULTI-MSMS	A375_MHC_IP_R2	2	463.3111877441406	3	462.577247	1384.70991	-0.87376	-0.00040418	0.29326	0.00013565	-0.58051	-0.00026853	462.57739428845616	22.967	0.30618	23.597	23.368	23.675	0.63014					12	5	3	0	0	0	0.66409	1	7347	7347		18.34	10.394	1	5163500			27995	2270	19911	20077	27471	27471					0.03294643512231232
KVRGLAYMIY	10	Unmodified	_KVRGLAYMIY_					0	0	0			REV__ENST00000415922.6_1_6:26638669-26638894:-|nuORF	REV__ENST00000415922.6_1_6:26638669-26638894:-|nuORF	MSMS	A375_MHC_IP_R2	2	607.6897583007812	2	607.341726	1212.6689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.6	1	108.36	107.86	108.86	0.75436								0	0	0	0.15508	1	40647	40647		4.3292	1.594	1		+		27996	24526	19912	20078	27472	27472					0.0710721093905704
KVRHLRHP	8	Unmodified	_KVRHLRHP_					0	0	0		ENSG00000239810|ENST00000619922|PRAMEF11	ENSG00000239810|ENST00000619922|PRAMEF11	ENSG00000239810|ENST00000619922|PRAMEF11	MSMS	A375_MHC_IP_R2	2	522.2216796875	2	521.822684	1041.63082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.35	1	145.37	144.87	145.87	0.021408								0	0	0	0.16876	1	56751	56751		5.2307	0	1				27997	9768	19913	20079	27473	27473					0.11166505859273457
KVRHLRHP	8	Unmodified	_KVRHLRHP_					0	0	0		ENSG00000239810|ENST00000619922|PRAMEF11	ENSG00000239810|ENST00000619922|PRAMEF11	ENSG00000239810|ENST00000619922|PRAMEF11	MSMS	A375_MHC_IP_R2	2	521.729248046875	2	521.822684	1041.63082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.36	1	145.38	144.88	145.88	0.021408								0	0	0	0.16876	1	56755	56755		2.5775	0	1				27998	9768	19913	20079	27474	27474					0.11166505859273457
KVRHNQFI	8	Unmodified	_KVRHNQFI_					0	0	0			REV__GRXCR1|p.R160K|1|0.21|ENSG00000215203|chr4:42962986-42962986|G/A|missense_variant	REV__GRXCR1|p.R160K|1|0.21|ENSG00000215203|chr4:42962986-42962986|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	521.6998901367188	2	521.30125	1040.58795	-0.54349	-0.00028332	-1.5589	-0.00081263	-2.1023	-0.001096	521.300332154174	79.713	0.45929	80.457	80.249	80.708	0.74474					12	8	2	0	0	0	0.972	1	30244	30244		8.5933	4.0644	1	3457600	+		27999	22672	19914	20080	27475	27475					0.06927691011196657
KVRKPDAWW	9	Unmodified	_KVRKPDAWW_					0	0	0		ENST00000564629.1_1_16:31469444-31469618:-|nuORF	ENST00000564629.1_1_16:31469444-31469618:-|nuORF	ENST00000564629.1_1_16:31469444-31469618:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	396.2889404296875	3	395.889097	1184.64546	-0.42849	-0.00016963	0.66921	0.00026493	0.24072	9.5298E-05	395.8893092877153	38.293	0.50993	38.293	38.067	38.577	0					26	9	4	0	0	0	0.46121	1	12962	12962		26.021	0	1	18610000			28000	13536	19915	20081	27476	27476					0.06052533216734446
KVRKPDAWW	9	Unmodified	_KVRKPDAWW_					0	0	0		ENST00000564629.1_1_16:31469444-31469618:-|nuORF	ENST00000564629.1_1_16:31469444-31469618:-|nuORF	ENST00000564629.1_1_16:31469444-31469618:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	396.2889099121094	3	395.889097	1184.64546	-0.63164	-0.00025006	0.32127	0.00012719	-0.31037	-0.00012287	395.8891945847028	37.295	0.66185	38.066	37.767	38.429	0.7709					29	12	4	0	0	0	0.2487	1	13615	13615		26.021	0	1	11557000			28001	13536	19915	20081	27477	27477					0.06052533216734446
KVRKRNTL	8	Unmodified	_KVRKRNTL_					0	0	0			REV__tr|U7T0T9|U7T0T9_FUSNUOsmoprotectanttransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00647PE=3SV=1	REV__tr|U7T0T9|U7T0T9_FUSNUOsmoprotectanttransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00647PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9806213378906	2	507.830175	1013.6458	-0.91851	-0.00046645	1.719	0.00087296	0.80048	0.00040651	507.83137909586844	50.34	0.91417	51.094	50.599	51.513	0.75406					26	17	2	0	0	0	0.81376	1	18948	18948		32.305	1.0371	1	5188400	+		28002	28682	19916	20082	27478	27478					0.1395195293659981
KVRMIKGEF	9	Unmodified	_KVRMIKGEF_					0	0	0		nc|ENSG00000102081|Q06787-11|FMR1;nc|ENSG00000102081|Q06787-10|FMR1;nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-6|FMR1;nc|ENSG00000102081|Q06787-2|FMR1;nc|ENSG00000102081|Q06787-4|FMR1;nc|ENSG00000102081|Q06787-5|FMR1;nc|ENSG00000102081|Q06787-9|FMR1;nc|ENSG00000102081|Q06787-7|FMR1;nc|ENSG00000102081|Q06787-3|FMR1;ENSG00000102081|ENST00000370475|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	MSMS	A375_MHC_IP_R1	1	369.94891357421875	3	369.882955	1106.62703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.296	1	66.296	65.796	66.796	0								0	0	0	0.15486	1	24003	24003		1.0715	0	1				28003	2356	19917	20083	27479	27479					0.07798655250530828
KVRPAELEQF	10	Unmodified	_KVRPAELEQF_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2	nc|ENSG00000079819|O43491-3|EPB41L2	nc|ENSG00000079819|O43491-3|EPB41L2	MULTI-SECPEP	A375_MHC_IP_R1	1	609.2374877929688	2	608.837862	1215.66117	-0.33989	-0.00020694	-0.65592	-0.00039935	-0.99581	-0.00060629	608.8374259261681	40.838	0.30282	40.838	40.66	40.963	0					9	5	2	0	0	0	0.79749	1	14102	14102		16.566	8.4104	1	2109000			28004	1704	19918	20084	27480	27480					0.06196774943123273
KVRPAELEQF	10	Unmodified	_KVRPAELEQF_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2	nc|ENSG00000079819|O43491-3|EPB41L2	nc|ENSG00000079819|O43491-3|EPB41L2	MULTI-MSMS	A375_MHC_IP_R2	2	406.6274719238281	3	406.227667	1215.66117	-0.032298	-1.312E-05	-0.39956	-0.00016231	-0.43186	-0.00017543	406.22745324019405	39.952	0.40528	40.727	40.524	40.93	0.77451					19	7	3	0	0	0	0.47932	1	14791	14791		29.437	2.3488	1	4987200			28005	1704	19918	20084	27481	27481					0.06196774943123273
KVRPAELEQF	10	Unmodified	_KVRPAELEQF_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2	nc|ENSG00000079819|O43491-3|EPB41L2	nc|ENSG00000079819|O43491-3|EPB41L2	MULTI-MATCH	A375_MHC_IP_R2	2		2	608.837862	1215.66117	-0.49087	-0.00029886	-0.30102	-0.00018327	-0.79188	-0.00048213	608.8376220238395	39.952	0.30381	40.726	40.575	40.879	0.77451	-0.055786	0.00034135	NaN	16.566	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1549100			28006	1704	19918	20084							0.06196774943123273
KVRPVYNFF	9	Unmodified	_KVRPVYNFF_					0	0	0		ENST00000498171.5_1_22:20077477-20097628:+|nuORF;ENST00000495826.5_1_22:20074657-20094820:+|nuORF;ENSG00000128191|ENST00000351989|DGCR8;nc|ENSG00000128191|Q8WYQ5-3|DGCR8	ENST00000498171.5_1_22:20077477-20097628:+|nuORF	ENST00000498171.5_1_22:20077477-20097628:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	390.9535217285156	3	390.553715	1168.63931	0.025504	9.9608E-06	0.077271	3.0179E-05	0.10278	4.0139E-05	390.55367210070574	65.622	0.50919	65.622	65.462	65.972	0					14	9	2	0	0	0	0.68705	1	23807	23807		8.1555	8.1555	1	1201400			28007	4122	19919	20085	27482	27482					0.06174014985208487
KVRPVYNFF	9	Unmodified	_KVRPVYNFF_					0	0	0		ENST00000498171.5_1_22:20077477-20097628:+|nuORF;ENST00000495826.5_1_22:20074657-20094820:+|nuORF;ENSG00000128191|ENST00000351989|DGCR8;nc|ENSG00000128191|Q8WYQ5-3|DGCR8	ENST00000498171.5_1_22:20077477-20097628:+|nuORF	ENST00000498171.5_1_22:20077477-20097628:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	390.553715	1168.63931	-0.13877	-5.4197E-05	0.67643	0.00026418	0.53766	0.00020998	390.55388663815904	64.665	0.40701	65.405	65.157	65.564	0.74022	-0.1086	0.0002251	NaN	8.1555	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1514600			28008	4122	19919	20085							0.06174014985208487
KVRSLRLK	8	Unmodified	_KVRSLRLK_					0	0	0			REV__nc|ENSG00000132821|Q96N03-2|VSTM2L	REV__nc|ENSG00000132821|Q96N03-2|VSTM2L	MULTI-MSMS	A375_MHC_IP_R2	2	500.7427062988281	2	500.342918	998.671283	-0.38365	-0.00019196	-0.063822	-3.1933E-05	-0.44747	-0.00022389	500.34281403914156	147.81	0.31859	147.83	147.72	148.04	0.018707					37	18	3	0	0	0	0.77842	1	57437	57437		0.69038	0	1	204580	+		28009	18684	19920	20086	27483	27483					0.1718942745901586
KVRSLRLK	8	Unmodified	_KVRSLRLK_					0	0	0			REV__nc|ENSG00000132821|Q96N03-2|VSTM2L	REV__nc|ENSG00000132821|Q96N03-2|VSTM2L	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	500.342918	998.671283	-0.38365	-0.00019196	-0.063822	-3.1933E-05	-0.44747	-0.00022389	500.34281403914156	147.81	0.31859	147.83	147.72	148.04	0.018707	0.0048237	7.6538E-05	NaN	0.69038	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204580	+		28010	18684	19920	20086							0.1718942745901586
KVRVGQETF	9	Unmodified	_KVRVGQETF_					0	0	0		ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	MULTI-SECPEP	A375_MHC_IP_R1	1	355.60125732421875	3	355.201341	1062.58219	-0.43758	-0.00015543	0.21821	7.7507E-05	-0.21937	-7.7921E-05	355.2013900001293	29.175	0.55826	29.175	28.895	29.453	0					18	10	2	0	0	0	0.24548	1	9075	9075		27.223	12.818	1	36997000			28011	7281	19921	20087	27484	27484					0.053405477088290354
KVRVGQETF	9	Unmodified	_KVRVGQETF_					0	0	0		ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	MULTI-SECPEP	A375_MHC_IP_R1	1	532.6979370117188	2	532.298373	1062.58219	-1.0416	-0.00055445	0.33711	0.00017944	-0.70451	-0.00037501	532.2984826699371	29.175	0.45797	29.175	28.945	29.403	0					13	8	2	0	0	0	0.011357	1	9076	9076		103.42	45.948	1	24595000			28012	7281	19921	20087	27485	27485					0.053405477088290354
KVRVGQETF	9	Unmodified	_KVRVGQETF_					0	0	0		ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	MULTI-MSMS	A375_MHC_IP_R2	2	532.6979370117188	2	532.298373	1062.58219	-1.104	-0.00058768	0.18237	9.7078E-05	-0.92168	-0.00049061	532.2984070228318	28.407	0.35524	29.086	28.858	29.214	0.67857					11	6	2	0	0	0	0.010055	1	9787	9787		125.53	68.058	1	24939000			28013	7281	19921	20087	27486	27486					0.053405477088290354
KVRVGQETF	9	Unmodified	_KVRVGQETF_					0	0	0		ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	MULTI-SECPEP	A375_MHC_IP_R2	2	355.6011962890625	3	355.201341	1062.58219	-0.64172	-0.00022794	0.22487	7.9875E-05	-0.41685	-0.00014807	355.20139400832795	28.407	0.55585	29.086	28.808	29.364	0.67857					15	10	2	0	0	0	0.4261	1	9783	9783		28.495	0.86571	1	33133000			28014	7281	19921	20087	27487	27487					0.053405477088290354
KVRVNGLW	8	Unmodified	_KVRVNGLW_					0	0	0			REV__ENST00000467549.5_1_3:78766930-78766993:-|nuORF	REV__ENST00000467549.5_1_3:78766930-78766993:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	486.17132568359375	2	486.292894	970.571235	-0.18773	-9.1289E-05	-0.3731	-0.00018143	-0.56082	-0.00027272	486.2925501212132	43.588	0.40617	43.588	43.351	43.757	0					14	7	3	0	0	0	0.95423	1	15193	15193		7.9102	2.1497	1	1875000	+		28015	25058	19922	20088	27488	27488					0.08477190125222478
KVRWPRKV	8	Unmodified	_KVRWPRKV_					0	0	0		ENST00000470601.5_1_3:51977371-51978822:+|nuORF	ENST00000470601.5_1_3:51977371-51978822:+|nuORF	ENST00000470601.5_1_3:51977371-51978822:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1973266601562	2	534.843085	1067.67162	-1.1996	-0.00064162	-0.7009	-0.00037487	-1.9005	-0.0010165	534.8423949586005	57.177	0.61035	57.927	57.561	58.172	0.75015					27	11	3	0	0	0	0.972	1	21639	21639		4.3292	2.6766	1	4873100			28016	12338	19923	20089	27489	27489					0.14048847178878532
KVRYKNISVF	10	Unmodified	_KVRYKNISVF_					0	0	0			REV__ENSG00000169375|ENST00000394947|SIN3A	REV__ENSG00000169375|ENST00000394947|SIN3A	MSMS	A375_MHC_IP_R1	1	418.6551208496094	3	418.583674	1252.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.305	1	30.305	29.805	30.805	0								0	0	0	0.15475	1	9615	9615		5.4027	0.99656	1		+		28017	20928	19924	20090	27490	27490					0.11293644593774843
KVSGLIKEY	9	Unmodified	_KVSGLIKEY_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.R7429Ifs*19|1|0.07|ENSG00000131018|chr6:152214911-152214966|TCTTTCTGTAGTCTGAGAGGAGATCAGAGACCAATGGCGGTTCAGATTCTGCATTC/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000471834.1_1_6:152690575-152702320:-|nuORF;nc|ENSG00000131018|Q8NF91-12|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	A375_MHC_IP_R1	1	519.2051391601562	2	518.8055	1035.59645	-0.46602	-0.00024178	0.013533	7.021E-06	-0.45249	-0.00023475	518.8054218420829	33.577	0.35461	33.577	33.393	33.748	0					13	6	3	0	0	0	0.13199	1	10999	10999		53.317	22.048	1	6527200			28018	4300	19925	20091	27491	27491					0.08007200137149084
KVSGLIKEY	9	Unmodified	_KVSGLIKEY_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.R7429Ifs*19|1|0.07|ENSG00000131018|chr6:152214911-152214966|TCTTTCTGTAGTCTGAGAGGAGATCAGAGACCAATGGCGGTTCAGATTCTGCATTC/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000471834.1_1_6:152690575-152702320:-|nuORF;nc|ENSG00000131018|Q8NF91-12|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.205078125	2	518.8055	1035.59645	-0.75601	-0.00039222	-0.018211	-9.448E-06	-0.77422	-0.00040167	518.8053618325055	32.709	0.45779	33.446	33.213	33.671	0.73691					16	8	3	0	0	0	0.38134	1	11673	11673		39.213	14.222	1	6511000			28019	4300	19925	20091	27492	27492					0.08007200137149084
KVSGVILSV	9	Unmodified	_KVSGVILSV_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;chr16:1465338-1471624|428|61.07|0.14|8.74|-|ENST00000569851|CLCN7,CLCN7;ENST00000564968.1_1_16:1507514-1509320:-|nuORF;ENST00000563822.1_1_16:1505719-1509320:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-SECPEP	A375_MHC_IP_R1	1	451.68963623046875	2	451.289485	900.564418	-0.32426	-0.00014634	0.67326	0.00030384	0.349	0.0001575	451.28965073591695	65.945	0.60936	65.945	65.717	66.326	0					24	11	3	0	0	0	0.087712	1	23880	23880		49.554	0	1	4636400			28020	2435	19926	20092	27493	27493					0.11015832454006613
KVSKPKQLM	9	Unmodified	_KVSKPKQLM_					0	0	0			REV__nc|ENSG00000169598|O76075-4|DFFB	REV__nc|ENSG00000169598|O76075-4|DFFB	MULTI-MSMS	A375_MHC_IP_R2	2	353.6169128417969	3	353.551205	1057.63179	-0.3913	-0.00013834	-1.9539	-0.00069081	-2.3452	-0.00082915	353.88464614483985	26.999	0.61388	27.664	27.318	27.932	0.66488					24	11	3	0	0	0	0.64808	1	9259	9259		7.609	0.50723	1	2132100	+		28021	20934	19927	20093	27494	27494					0.10527539393297047
KVSRDTLY	8	Unmodified	_KVSRDTLY_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;RPL10A|p.L111Wfs*6|1|0.08|ENSG00000198755|chr6:35470196-35470196|T/-|frameshift_variant;ENST00000490335.4_1_6:35436211-35436651:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A;ENST00000467020.5_1_6:35436211-35436817:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	MULTI-SECPEP	A375_MHC_IP_R2	2	491.6533508300781	2	491.271824	980.529095	-0.56432	-0.00027723	-0.35806	-0.00017591	-0.92238	-0.00045314	491.2717184234849	31.333	1.4725	32.051	30.759	32.231	0.71857					38	28	2	0	0	0	0.8957	1	10675	10675		28.487	5.3384	1	2978800			28022	9318;12272	19928	20094	27495	27495					0.038051699261814065
KVSRLVILIK	10	Unmodified	_KVSRLVILIK_					0	0	0		tr|U7STW3|U7STW3_FUSNUTrksystempotassiumuptakeproteinTrkHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01005PE=3SV=1	tr|U7STW3|U7STW3_FUSNUTrksystempotassiumuptakeproteinTrkHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01005PE=3SV=1	tr|U7STW3|U7STW3_FUSNUTrksystempotassiumuptakeproteinTrkHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01005PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	584.7449951171875	2	584.910633	1167.80671	-0.29139	-0.00017044	-0.067808	-3.9662E-05	-0.3592	-0.0002101	584.9104641081401	142.02	0.15038	142.05	141.98	142.13	0.030731					6	2	3	0	0	0	0.94897	1	55506	55506		1.4819	1.0236	1	3339800			28023	29719	19929	20095	27496	27496					0.22952282529968215
KVSSKKKK	8	Unmodified	_KVSSKKKK_					0	0	0		nc|ENSG00000197442|Q99683-2|MAP3K5;ENSG00000197442|ENST00000359015|MAP3K5	nc|ENSG00000197442|Q99683-2|MAP3K5	nc|ENSG00000197442|Q99683-2|MAP3K5	MULTI-SECPEP	A375_MHC_IP_R2	2	932.1033325195312	1	932.625127	931.617851	-0.27135	-0.00025306	-1.3114	-0.001223	-1.5827	-0.0014761	932.6254449963593	122.11	0.30323	122.49	122.26	122.57	0.3766					6	5	2	0	0	0	0.972	1	46711	46711		0	0	1	9538200			28024	9159	19930	20096	27497	27497					0.1493062995650689
KVSVVTAKQF	10	Unmodified	_KVSVVTAKQF_					0	0	0			REV__nc|ENSG00000056487|Q96EK2-4|PHF21B	REV__nc|ENSG00000056487|Q96EK2-4|PHF21B	MULTI-SECPEP	A375_MHC_IP_R1	1	554.2316284179688	2	553.832049	1105.64954	-0.49713	-0.00027533	-0.10641	-5.8932E-05	-0.60354	-0.00033426	553.8319765146222	53.58	0.81249	53.58	53.301	54.113	0					28	15	2	0	0	0	0.24721	1	19093	19093		65.474	31.072	1	7503900	+		28025	16422	19931	20097	27498	27498					0.10094577919790026
KVTDIIVSF	9	Unmodified	_KVTDIIVSF_					0	0	0		nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	MULTI-SECPEP	A375_MHC_IP_R1	1	511.7003479003906	2	511.30005	1020.58555	-0.43641	-0.00022314	0.48156	0.00024622	0.045147	2.3084E-05	511.30021520711415	96.35	0.7629	96.35	96.018	96.781	0					38	14	4	0	0	0	0.087712	1	35375	35375		66.457	5.0992	1	11934000			28026	2592	19932	20098	27499	27499					0.07607797762852897
KVTEGLVDV	9	Unmodified	_KVTEGLVDV_					0	0	0		HNRNPR|p.Y490Lfs*4|1|0.21|ENSG00000125944|chr1:23310888-23310889|AG/-|frameshift_variant;nc|ENSG00000125944|O43390-3|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR	HNRNPR|p.Y490Lfs*4|1|0.21|ENSG00000125944|chr1:23310888-23310889|AG/-|frameshift_variant	HNRNPR|p.Y490Lfs*4|1|0.21|ENSG00000125944|chr1:23310888-23310889|AG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	480.67388916015625	2	480.274032	958.533512	-0.28011	-0.00013453	0.39283	0.00018866	0.11271	5.4134E-05	480.27405388200475	51.363	0.55933	51.363	51.168	51.728	0					21	10	3	0	0	0	0.04447	1	18257	18257		66.457	7.7779	1	1939800			28027	4009	19933	20099	27500	27500					0.05258634349092972
KVTENLRVL	9	Unmodified	_KVTENLRVL_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000574167.1_1_17:4443199-4445180:-|nuORF;ENST00000574934.5_1_17:4442712-4445225:-|nuORF;ENST00000574547.5_1_17:4442712-4447986:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-SECPEP	A375_MHC_IP_R1	1	536.7295532226562	2	536.329673	1070.64479	-0.68141	-0.00036546	-0.037927	-2.0341E-05	-0.71933	-0.0003858	536.3297074494611	40.329	0.4085	40.329	40.1	40.509	0					15	7	3	0	0	0	0.57304	1	13852	13852		29.841	8.3036	1	5760500			28028	4400	19934	20100	27501	27501					0.11229693777045213
KVTENLRVL	9	Unmodified	_KVTENLRVL_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000574167.1_1_17:4443199-4445180:-|nuORF;ENST00000574934.5_1_17:4442712-4445225:-|nuORF;ENST00000574547.5_1_17:4442712-4447986:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MATCH	A375_MHC_IP_R2	2		2	536.329673	1070.64479	-0.9472	-0.00050801	0.12927	6.9331E-05	-0.81793	-0.00043868	536.3297801054091	39.419	0.30416	40.194	39.965	40.269	0.77451	-0.067748	7.1056E-05	NaN	29.841	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3265400			28029	4400	19934	20100							0.11229693777045213
KVTLLIEEGWL	11	Unmodified	_KVTLLIEEGWL_					0	0	0			REV__ENST00000531162.5_1_14:95600723-95607049:-|nuORF	REV__ENST00000531162.5_1_14:95600723-95607049:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	433.62799072265625	3	434.255223	1299.74384	-0.1401	-6.0839E-05	-0.11725	-5.0917E-05	-0.25735	-0.00011176	434.5895415377414	61.813	0.30812	61.813	61.686	61.994	0					9	5	2	0	0	0	0.99681	1	22342	22342		7.0371	3.4444	1	748930	+		28030	25847	19935	20101	27502	27502					0.10595671951296026
KVVDIYSKF	9	Unmodified	_KVVDIYSKF_					0	0	0		nc|ENSG00000106617|Q9UGJ0-2|PRKAG2;nc|ENSG00000106617|Q9UGJ0-3|PRKAG2;ENSG00000106617|ENST00000287878|PRKAG2;PRKAG2|p.T495Pfs*11|1|0.12|ENSG00000106617|chr7:151564179-151564180|TC/-|frameshift_variant	nc|ENSG00000106617|Q9UGJ0-2|PRKAG2	nc|ENSG00000106617|Q9UGJ0-2|PRKAG2	MULTI-SECPEP	A375_MHC_IP_R2	2	550.1819458007812	2	549.813325	1097.6121	-1.0486	-0.00057654	0.77448	0.00042582	-0.27412	-0.00015071	549.8135452326471	51.662	0.3555	52.414	52.27	52.626	0.75225					9	6	2	0	0	0	0.30942	1	19473	19473		46.475	26.061	1	1691600			28031	2702	19936	20102	27503	27503					0.06719486654174034
KVVDIYSKF	9	Unmodified	_KVVDIYSKF_					0	0	0		nc|ENSG00000106617|Q9UGJ0-2|PRKAG2;nc|ENSG00000106617|Q9UGJ0-3|PRKAG2;ENSG00000106617|ENST00000287878|PRKAG2;PRKAG2|p.T495Pfs*11|1|0.12|ENSG00000106617|chr7:151564179-151564180|TC/-|frameshift_variant	nc|ENSG00000106617|Q9UGJ0-2|PRKAG2	nc|ENSG00000106617|Q9UGJ0-2|PRKAG2	MULTI-MATCH	A375_MHC_IP_R1	1		2	549.813325	1097.6121	-0.6252	-0.00034374	0.24746	0.00013606	-0.37774	-0.00020769	549.8135323325426	52.576	0.35733	52.576	52.387	52.744	0	0.081083	-0.0003292	NaN	46.475	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1728200			28032	2702	19936	20102							0.06719486654174034
KVVDVVRNL	9	Unmodified	_KVVDVVRNL_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-SECPEP	A375_MHC_IP_R1	1	521.9669799804688	2	521.324391	1040.63423	-0.15566	-8.1152E-05	0.077499	4.0402E-05	-0.078165	-4.0749E-05	521.3245268363522	48.35	0.65733	48.35	47.92	48.577	0					22	12	3	0	0	0	0.72623	1	17105	17105		6.1918	0	1	8781500			28033	6255	19937	20103	27504	27504					0.11553711122610366
KVVEGSFVY	9	Unmodified	_KVVEGSFVY_					0	0	0		ENST00000491154.1_1_X:153666748-153668487:+|nuORF;ENSG00000203879|ENST00000447750|GDI1	ENST00000491154.1_1_X:153666748-153668487:+|nuORF	ENST00000491154.1_1_X:153666748-153668487:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	514.6760864257812	2	514.276575	1026.5386	-0.42349	-0.00021779	0.25636	0.00013184	-0.16712	-8.5948E-05	514.2767006663823	53.677	0.61073	53.677	53.352	53.962	0					23	11	3	0	0	0	0.59098	1	19133	19133		27.629	5.8822	1	4769900			28034	12655	19938	20104	27505	27505					0.026389382117031346
KVVEGSFVY	9	Unmodified	_KVVEGSFVY_					0	0	0		ENST00000491154.1_1_X:153666748-153668487:+|nuORF;ENSG00000203879|ENST00000447750|GDI1	ENST00000491154.1_1_X:153666748-153668487:+|nuORF	ENST00000491154.1_1_X:153666748-153668487:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	514.6761474609375	2	514.276575	1026.5386	-1.2805	-0.00065851	0.33092	0.00017018	-0.94954	-0.00048833	514.2766783466283	52.877	0.55857	53.628	53.385	53.944	0.75105					16	10	2	0	0	0	0.5212	1	19941	19941		32.786	5.902	1	4463700			28035	12655	19938	20104	27506	27506					0.026389382117031346
KVVEIVKKL	9	Unmodified	_KVVEIVKKL_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	A375_MHC_IP_R1	1	352.9775390625	3	352.577749	1054.71142	-0.26719	-9.4205E-05	0.071889	2.5347E-05	-0.1953	-6.8858E-05	352.57773314429704	32.912	0.91315	32.912	32.684	33.597	0					52	17	5	0	0	0	0.001741	1	10644	10644		146.68	51.771	1	115610000			28036	7961	19939	20105	27507	27507					0.1862492933894373
KVVEIVKKL	9	Unmodified	_KVVEIVKKL_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-SECPEP	A375_MHC_IP_R1	1	528.762451171875	2	528.362985	1054.71142	-0.70793	-0.00037404	-0.058475	-3.0896E-05	-0.7664	-0.00040494	528.3628750018502	32.912	0.45517	32.912	32.684	33.14	0					21	8	3	0	0	0	0.011093	1	10667	10667		139.78	45.844	1	18163000			28037	7961	19939	20105	27508	27508					0.1862492933894373
KVVEIVKKL	9	Unmodified	_KVVEIVKKL_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	A375_MHC_IP_R2	2	352.9777526855469	3	352.577749	1054.71142	-0.23941	-8.4412E-05	0.16663	5.8752E-05	-0.072779	-2.566E-05	352.5777704595066	31.943	0.81274	32.679	32.453	33.265	0.73691					42	15	5	0	0	0	0.0046625	2	11295	11295;11330		135.72	49.954	1	106450000			28038	7961	19939	20105	27509;27510	27509					0.1862492933894373
KVVEIVKKL	9	Unmodified	_KVVEIVKKL_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-SECPEP	A375_MHC_IP_R2	2	528.762451171875	2	528.362985	1054.71142	-0.53479	-0.00028256	0.036455	1.9262E-05	-0.49833	-0.0002633	528.3628828551396	31.947	0.40467	32.684	32.453	32.857	0.73691					17	7	3	0	0	0	0.011093	1	11325	11325		128.57	66.971	1	12639000			28039	7961	19939	20105	27511	27511					0.1862492933894373
KVVGEKAVNP	10	Unmodified	_KVVGEKAVNP_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;ENST00000529230.5_1_11:46818386-46818443:-|nuORF	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-SECPEP	A375_MHC_IP_R1	1	521.2081298828125	2	520.808574	1039.60259	-0.69756	-0.0003633	-0.17803	-9.272E-05	-0.87559	-0.00045602	520.8083536922871	28.114	0.55293	28.114	27.786	28.339	0					18	10	3	0	0	0	0.92514	1	8620	8620		12.241	11.047	1	3405800			28040	7941	19940	20106	27512	27512					0.08437718368668357
KVVGKDYLL	9	Unmodified	_KVVGKDYLL_					0	0	0		nc|ENSG00000077549|P47756-1|CAPZB;ENSG00000077549|ENST00000264202|CAPZB;ENST00000482808.1_1_1:19700942-19811932:-|nuORF	nc|ENSG00000077549|P47756-1|CAPZB	nc|ENSG00000077549|P47756-1|CAPZB	MULTI-SECPEP	A375_MHC_IP_R1	1	518.2156372070312	2	517.815867	1033.61718	-0.29321	-0.00015183	-0.27864	-0.00014429	-0.57185	-0.00029611	517.8157421479777	42.917	0.71133	42.917	42.689	43.4	0					21	13	3	0	0	0	0.57304	1	14906	14906		18.373	16.891	1	3527900			28041	1659	19941	20107	27513	27513					0.10171790516801593
KVVKPVRKV	9	Unmodified	_KVVKPVRKV_					0	0	0		ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MSMS	A375_MHC_IP_R1	1	351.633544921875	3	351.581605	1051.72298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.539	1	29.539	29.039	30.039	0								0	0	0	0.15486	1	9270	9270		4.5289	0.33936	1				28042	4718	19942	20108	27514	27514					0.1991917115292381
KVVNIVPVI	9	Unmodified	_KVVNIVPVI_					0	0	0		nc|ENSG00000184640|Q9UHD8-4|SEPTIN9;nc|ENSG00000184640|Q9UHD8-9|SEPTIN9;ENST00000592481.5_1_17:75447336-75492345:+|nuORF;nc|ENSG00000184640|Q9UHD8-3|SEPTIN9;nc|ENSG00000184640|Q9UHD8-8|SEPTIN9;nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;nc|ENSG00000184640|Q9UHD8-2|SEPTIN9;nc|ENSG00000184640|Q9UHD8-5|SEPTIN9;ENSG00000184640|ENST00000427177|SEPTIN9	nc|ENSG00000184640|Q9UHD8-4|SEPTIN9	nc|ENSG00000184640|Q9UHD8-4|SEPTIN9	MULTI-SECPEP	A375_MHC_IP_R1	1	491.22882080078125	2	490.828778	979.643003	-0.31561	-0.00015491	0.35759	0.00017552	0.041981	2.0606E-05	490.8289067734722	89.551	0.50661	89.551	89.323	89.83	0					12	9	2	0	0	0	0.3243	1	32924	32924		44.407	15.92	1	1930500			28043	8599	19943	20109	27515	27515					0.15236684759088348
KVVRALKKL	9	Unmodified	_KVVRALKKL_					0	0	0			REV__ENSG00000161509|ENST00000293190|GRIN2C	REV__ENSG00000161509|ENST00000293190|GRIN2C	MSMS	A375_MHC_IP_R2	2	352.3488464355469	3	352.253488	1053.73863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.558	1	35.315	34.815	35.815	0.75732								0	0	0	0.15486	1	12478	12478		7.609	2.7119	1		+		28044	20208	19944	20110	27516	27516					0.213914576699608
KVVSIPKETW	10	Unmodified	_KVVSIPKETW_					0	0	0		ENSG00000075213|ENST00000265362|SEMA3A	ENSG00000075213|ENST00000265362|SEMA3A	ENSG00000075213|ENST00000265362|SEMA3A	MULTI-MSMS	A375_MHC_IP_R1	1	396.6324462890625	3	396.23253	1185.67576	0.35554	0.00014088	-0.15861	-6.2845E-05	0.19693	7.803E-05	396.23244762445614	48.69	0.55729	48.69	48.375	48.933	0					21	10	3	0	0	0	0.54537	1	17186	17186		24.957	16.205	1	4175500			28045	1602	19945	20111	27517	27517					0.09034847091265874
KVVSIPKETW	10	Unmodified	_KVVSIPKETW_					0	0	0		ENSG00000075213|ENST00000265362|SEMA3A	ENSG00000075213|ENST00000265362|SEMA3A	ENSG00000075213|ENST00000265362|SEMA3A	MULTI-SECPEP	A375_MHC_IP_R1	1	594.24462890625	2	593.845156	1185.67576	0.062504	3.7117E-05	-0.28202	-0.00016748	-0.21951	-0.00013036	593.844882816806	48.684	0.45571	48.684	48.426	48.882	0					16	8	3	0	0	0	0.24248	1	17201	17201		68.76	68.76	1	3288200			28046	1602	19945	20111	27518	27518					0.09034847091265874
KVVSIPKETW	10	Unmodified	_KVVSIPKETW_					0	0	0		ENSG00000075213|ENST00000265362|SEMA3A	ENSG00000075213|ENST00000265362|SEMA3A	ENSG00000075213|ENST00000265362|SEMA3A	MULTI-MSMS	A375_MHC_IP_R2	2	396.6322937011719	3	396.23253	1185.67576	0.00099385	3.9379E-07	-0.41943	-0.00016619	-0.41843	-0.0001658	396.2323462753225	47.822	0.50456	48.584	48.378	48.883	0.76128					21	9	3	0	0	0	0.59998	1	17962	17962		20.871	13.394	1	2765700			28047	1602	19945	20111	27519	27519					0.09034847091265874
KVVSIPKETW	10	Unmodified	_KVVSIPKETW_					0	0	0		ENSG00000075213|ENST00000265362|SEMA3A	ENSG00000075213|ENST00000265362|SEMA3A	ENSG00000075213|ENST00000265362|SEMA3A	MULTI-SECPEP	A375_MHC_IP_R2	2	594.244873046875	2	593.845156	1185.67576	-0.44275	-0.00026292	-0.47487	-0.000282	-0.91762	-0.00054492	593.844821847682	47.829	0.40482	48.591	48.378	48.783	0.76128					11	7	2	0	0	0	0.097312	1	17948	17948		70.929	51.567	1	3419500			28048	1602	19945	20111	27520	27520					0.09034847091265874
KVVVGGAEW	9	Unmodified	_KVVVGGAEW_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	A375_MHC_IP_R1	1	473.16375732421875	2	472.763635	943.512717	-0.42044	-0.00019877	-2.4472	-0.0011569	-2.8676	-0.0013557	472.76373326979166	52.081	1.1191	52.081	51.728	52.847	0					38	21	3	0	0	0	0.082375	1	18589	18589		53.833	15.859	1	3837800			28049	5945	19946	20112	27521	27521					0.038700887600725764
KVVVGGAEW	9	Unmodified	_KVVVGGAEW_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-SECPEP	A375_MHC_IP_R2	2	473.1636047363281	2	472.763635	943.512717	-0.78946	-0.00037323	-0.9913	-0.00046865	-1.7808	-0.00084188	472.76364852429015	51.551	1.0155	52.303	51.713	52.729	0.75225					37	19	3	0	0	0	0.05021	1	19369	19369		78.728	34.87	1	3924300			28050	5945	19946	20112	27522	27522					0.038700887600725764
KVVVKNIKF	9	Unmodified	_KVVVKNIKF_					0	0	0			REV__nc|ENSG00000095370|Q8N5H7-6|SH2D3C	REV__nc|ENSG00000095370|Q8N5H7-6|SH2D3C	MULTI-SECPEP	A375_MHC_IP_R2	2	359.5853271484375	3	358.905977	1073.6961	-0.28283	-0.00010151	0.011173	4.0102E-06	-0.27166	-9.75E-05	358.9059616744899	40.462	0.30457	41.236	40.98	41.285	0.77451					7	5	2	0	0	0	0.7911	1	14970	14970		7.609	0	1	574220	+		28051	16992	19947	20113	27523	27523					0.16220062541742664
KVWDIVGTEL	10	Unmodified	_KVWDIVGTEL_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-SECPEP	A375_MHC_IP_R1	1	580.7217407226562	2	580.321514	1158.62847	-0.14836	-8.6097E-05	-0.91212	-0.00052932	-1.0605	-0.00061542	580.3214581864573	101.83	0.55624	101.83	101.55	102.1	0					19	10	3	0	0	0	0.2729	1	37399	37399		55.235	17.059	1	1936300			28052	4341	19948	20114	27524	27524					0.055505678202735
KVWGNVVTV	9	Unmodified	_KVWGNVVTV_					0	0	0		HNRNPR|p.Y490Lfs*4|1|0.21|ENSG00000125944|chr1:23310888-23310889|AG/-|frameshift_variant;nc|ENSG00000125944|O43390-3|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-4|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR	HNRNPR|p.Y490Lfs*4|1|0.21|ENSG00000125944|chr1:23310888-23310889|AG/-|frameshift_variant	HNRNPR|p.Y490Lfs*4|1|0.21|ENSG00000125944|chr1:23310888-23310889|AG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	502.2047424316406	2	501.292559	1000.57057	-0.4837	-0.00024247	0.22787	0.00011423	-0.25582	-0.00012824	501.2925687150028	65.329	1.271	65.329	64.851	66.122	0					56	24	4	0	0	0	0.01574	1	23611	23611		88.904	17.77	1	22471000			28053	4009	19949	20115	27525	27525					0.07030350685533904
KVWKEQFRV	9	Unmodified	_KVWKEQFRV_					0	0	0		ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	MULTI-MSMS	A375_MHC_IP_R1	1	407.62689208984375	3	407.236385	1218.68733	-0.028962	-1.1795E-05	0.29153	0.00011872	0.26257	0.00010693	407.2364812973275	35.575	0.66344	35.575	35.218	35.881	0					19	10	3	0	0	0	0.39657	1	11853	11853		24.882	14.566	1	2831000			28054	4646	19950	20116	27526	27526					0.08673088905266013
KVWKEQFRVRW	11	Unmodified	_KVWKEQFRVRW_					0	0	0		ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	MSMS	A375_MHC_IP_R1	1	781.529296875	2	781.441152	1560.86775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.92	1	130.92	130.42	131.42	0								0	0	0	0.16334	1	50451	50451		1.3295	0.13619	1				28055	4646	19951	20117	27527	27527					0.10975187562098654
KVWNNKITST	10	Unmodified	_KVWNNKITST_					0	0	0		NDST3|p.I444N|1|0.6|ENSG00000164100|chr4:118138160-118138160|T/A|missense_variant	NDST3|p.I444N|1|0.6|ENSG00000164100|chr4:118138160-118138160|T/A|missense_variant	NDST3|p.I444N|1|0.6|ENSG00000164100|chr4:118138160-118138160|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	397.62762451171875	3	397.555784	1189.64552	-0.1301	-5.172E-05	-0.17777	-7.0673E-05	-0.30786	-0.00012239	397.555943661987	20.033	0.45605	20.033	19.776	20.232	0					12	8	2	0	0	0	0.71175	1	5049	5049		7.0371	0.40671	1	1871300			28056	14987	19952	20118	27528	27528					0.058284884260729086
KVWPGGSRTW	10	Unmodified	_KVWPGGSRTW_					0	0	0		nc|ENSG00000087884|Q9H7C9-3|AAMDC;nc|ENSG00000087884|Q9H7C9-2|AAMDC;ENSG00000087884|ENST00000393427|AAMDC	nc|ENSG00000087884|Q9H7C9-3|AAMDC	nc|ENSG00000087884|Q9H7C9-3|AAMDC	MULTI-SECPEP	A375_MHC_IP_R1	1	392.61114501953125	3	391.876969	1172.60908	-0.21238	-8.3227E-05	0.35181	0.00013787	0.13943	5.4639E-05	392.21139971701274	41.546	0.61346	41.546	41.215	41.828	0					18	11	2	0	0	0	0.83327	1	14390	14390		12.228	3.9412	1	3246500			28057	1880	19953	20119	27529	27529					0.02967656320038259
KVWPGGSRTW	10	Unmodified	_KVWPGGSRTW_					0	0	0		nc|ENSG00000087884|Q9H7C9-3|AAMDC;nc|ENSG00000087884|Q9H7C9-2|AAMDC;ENSG00000087884|ENST00000393427|AAMDC	nc|ENSG00000087884|Q9H7C9-3|AAMDC	nc|ENSG00000087884|Q9H7C9-3|AAMDC	MULTI-SECPEP	A375_MHC_IP_R1	1	587.7111206054688	2	587.311815	1172.60908	-0.61415	-0.00036069	0.4712	0.00027674	-0.14295	-8.3956E-05	587.3119603766019	41.527	0.76719	41.527	41.215	41.982	0					28	14	3	0	0	0	0.72578	1	14385	14385		33.445	10.709	1	3043800			28058	1880	19953	20119	27530	27530					0.02967656320038259
KVWPGGSRTW	10	Unmodified	_KVWPGGSRTW_					0	0	0		nc|ENSG00000087884|Q9H7C9-3|AAMDC;nc|ENSG00000087884|Q9H7C9-2|AAMDC;ENSG00000087884|ENST00000393427|AAMDC	nc|ENSG00000087884|Q9H7C9-3|AAMDC	nc|ENSG00000087884|Q9H7C9-3|AAMDC	MULTI-MATCH	A375_MHC_IP_R2	2		3	391.876969	1172.60908	-0.33581	-0.0001316	0.50689	0.00019864	0.17108	6.7042E-05	391.87712006921544	40.699	0.60999	41.474	41.082	41.692	0.77451	-0.0363	9.3512E-05	NaN	12.228	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2491400			28059	1880	19953	20119							0.02967656320038259
KVWPGSTAF	9	Unmodified	_KVWPGSTAF_					0	0	0		ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	MULTI-SECPEP	A375_MHC_IP_R1	1	497.1634521484375	2	496.763635	991.512717	-0.44759	-0.00022235	0.30333	0.00015068	-0.14427	-7.1666E-05	496.7636437507142	64.812	0.35729	64.812	64.597	64.954	0					10	6	2	0	0	0	0.31606	1	23477	23477		47.749	29.614	1	1177600			28060	7591	19954	20120	27531	27531					0.01662088760087954
KVWRDQHFV	9	Unmodified	_KVWRDQHFV_					0	0	0		ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	MULTI-SECPEP	A375_MHC_IP_R2	2	405.952392578125	3	405.552485	1213.63563	0.001795	7.2797E-07	-3.0733	-0.0012464	-3.0715	-0.0012457	405.5523094841814	30.469	0.45468	31.188	30.962	31.417	0.71857					30	8	5	0	0	0	0.57806	1	10708	10708		30.703	15.455	1	4973800			28061	1534	19955	20121	27532	27532					0.03735345211339336
KVYFIYEGY	9	Unmodified	_KVYFIYEGY_					0	0	0		ENSG00000067057|ENST00000381125|PFKP;ENST00000381075.6_1_10:3124581-3143118:+|nuORF	ENSG00000067057|ENST00000381125|PFKP	ENSG00000067057|ENST00000381125|PFKP	MULTI-SECPEP	A375_MHC_IP_R1	1	591.6975708007812	2	591.297507	1180.58046	-0.52706	-0.00031165	-0.10898	-6.4442E-05	-0.63604	-0.00037609	591.297375312291	84.316	0.70824	84.316	83.989	84.697	0					33	13	3	0	0	0	0.05021	1	30849	30849		78.728	49.646	1	8868000			28062	1424	19956	20122	27533	27533					-0.002605060997666442
KVYFIYEGY	9	Unmodified	_KVYFIYEGY_					0	0	0		ENSG00000067057|ENST00000381125|PFKP;ENST00000381075.6_1_10:3124581-3143118:+|nuORF	ENSG00000067057|ENST00000381125|PFKP	ENSG00000067057|ENST00000381125|PFKP	MULTI-MSMS	A375_MHC_IP_R2	2	591.6970825195312	2	591.297507	1180.58046	-0.51751	-0.000306	-0.38739	-0.00022906	-0.9049	-0.00053506	591.297381237651	83.619	0.76823	84.359	84.049	84.817	0.73962					32	14	3	0	0	0	0.052747	2	31754	31742;31754		78.728	49.646	1	8805700			28063	1424	19956	20122	27534;27535	27535					-0.002605060997666442
KVYNGQKVY	9	Unmodified	_KVYNGQKVY_					0	0	0			REV__TEX14|p.T1009Gfs*8|1|0.04|ENSG00000121101|chr17:58585864-58585865|-/CATTGTTGCC|frameshift_variant	REV__TEX14|p.T1009Gfs*8|1|0.04|ENSG00000121101|chr17:58585864-58585865|-/CATTGTTGCC|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	550.2005004882812	2	549.800749	1097.58694	-0.99671	-0.00054799	0.45082	0.00024786	-0.54588	-0.00030013	549.8008200958767	35.574	0.55778	36.338	36.132	36.69	0.76338					21	10	3	0	0	0	0.47368	1	12911	12911		26.884	0	1	3644300	+		28064	18148	19957	20123	27536	27536					0.042054318516193234
KWCDMVIY	8	Unmodified	_KWCDMVIY_					0	0	0			REV__HTR1E|p.R87C|2|0.33|ENSG00000168830|chr6:87015593-87015593|C/T|missense_variant	REV__HTR1E|p.R87C|2|0.33|ENSG00000168830|chr6:87015593-87015593|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	529.6458129882812	2	529.245906	1056.47726	-0.54875	-0.00029042	0.079524	4.2088E-05	-0.46922	-0.00024833	529.2458979704817	73.365	2.0274	73.365	72.321	74.349	0					96	39	4	0	0	0	0.61116	1	26808	26808		44.407	3.9584	1	22731000	+		28065	26765	19958	20124	27537	27537					-0.04872033083574934
KWFFDRIARLM	11	Unmodified	_KWFFDRIARLM_					0	0	0			REV__ENST00000528821.5_1_12:16109876-16185684:+|nuORF	REV__ENST00000528821.5_1_12:16109876-16185684:+|nuORF	MSMS	A375_MHC_IP_R2	2	741.8973999023438	2	741.905556	1481.79656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.15	1	115.84	115.34	116.34	0.68999								0	0	0	0.16316	1	43406	43406		2.2828	1.0894	1		+		28066	16281	19959	20125	27538	27538					0.07493351533094028
KWFKGKWVDL	10	Unmodified	_KWFKGKWVDL_					0	0	0		ENSG00000134571|ENST00000545968|MYBPC3;nc|ENSG00000134571|Q14896-2|MYBPC3	ENSG00000134571|ENST00000545968|MYBPC3	ENSG00000134571|ENST00000545968|MYBPC3	MSMS	A375_MHC_IP_R1	1	653.87890625	2	653.868966	1305.72338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.468	1	95.468	94.968	95.968	0								0	0	0	0.15531	1	35089	35089		3.5965	0	1				28067	4588	19960	20126	27539	27539					0.08274546082134293
KWFTKKLRIRR	11	Unmodified	_KWFTKKLRIRR_					0	0	0			REV__ENST00000478691.5_1_1:23645184-23648146:-|nuORF	REV__ENST00000478691.5_1_1:23645184-23648146:-|nuORF	MSMS	A375_MHC_IP_R1	1	766.2689819335938	2	766.488437	1530.96232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.45	1	32.45	31.95	32.95	0								0	0	0	0.1636	1	10486	10486		0	0	1		+		28068	25221	19961	20127	27540	27540					0.21807746104104808
KWGMKELMKW	10	Unmodified	_KWGMKELMKW_					0	0	0			REV__AGGF1|p.R624W|1|0.3|ENSG00000164252|chr5:77061728-77061728|C/T|missense_variant	REV__AGGF1|p.R624W|1|0.3|ENSG00000164252|chr5:77061728-77061728|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	668.7472534179688	2	668.848861	1335.68317	-0.73511	-0.00049168	-0.17063	-0.00011413	-0.90574	-0.00060581	668.848780614121	19.485	0.25331	19.485	19.318	19.571	0					8	4	2	0	0	0	0.7245	1	4867	4867		1.3295	0.13619	1	3650100	+		28069	15343	19962	20128	27541	27541					0.02875540095692486
KWKGKEKMSEV	11	Unmodified	_KWKGKEKMSEV_					0	0	0		ENST00000440473.5_1_7:76959552-76961247:-|nuORF	ENST00000440473.5_1_7:76959552-76961247:-|nuORF	ENST00000440473.5_1_7:76959552-76961247:-|nuORF	MSMS	A375_MHC_IP_R2	2	450.6688537597656	3	450.579712	1348.71731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.762	1	48.523	48.023	49.023	0.76128								0	0	0	0.16124	1	17919	17919		6.6235	1.9075	1				28070	11973	19963	20129	27542	27542					0.0568965978829965
KWKKFVRRKKK	11	Unmodified	_KWKKFVRRKKK_					0	0	0		ENST00000429378.5_3_16:242971-256079:-|nuORF	ENST00000429378.5_3_16:242971-256079:-|nuORF	ENST00000429378.5_3_16:242971-256079:-|nuORF	MSMS	A375_MHC_IP_R2	2	766.5068969726562	2	766.506629	1530.99871	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.302	1	82.047	81.547	82.547	0.74474								0	0	0	0.1636	1	30873	30873		0	0	1				28071	11842	19964	20130	27543	27543					0.2544462300079431
KWKKIRRFSL	10	Unmodified	_KWKKIRRFSL_					0	0	0		CYP2C9|p.E122K|1|0.33|ENSG00000138109|chr10:94942224-94942224|G/A|missense_variant	CYP2C9|p.E122K|1|0.33|ENSG00000138109|chr10:94942224-94942224|G/A|missense_variant	CYP2C9|p.E122K|1|0.33|ENSG00000138109|chr10:94942224-94942224|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	681.4810791015625	2	681.430056	1360.84556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.257	1	49.257	48.757	49.757	0								0	0	0	0.15629	1	17415	17415		0.40072	0.050084	1				28072	700	19965	20131	27544	27544					0.1795700788436534
KWKKRFLHQNR	11	Unmodified	_KWKKRFLHQNR_					0	0	0			REV__ENST00000342992.10_3_2:179542611-179544107:-|nuORF	REV__ENST00000342992.10_3_2:179542611-179544107:-|nuORF	MSMS	A375_MHC_IP_R1	1	771.1682739257812	2	770.952218	1539.88988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.34	1	140.34	139.84	140.84	0								0	0	0	0.16358	1	53908	53908		0.30703	0	1		+		28073	23748	19966	20132	27545	27545					0.14153412030555046
KWKKRFLHQNR	11	Unmodified	_KWKKRFLHQNR_					0	0	0			REV__ENST00000342992.10_3_2:179542611-179544107:-|nuORF	REV__ENST00000342992.10_3_2:179542611-179544107:-|nuORF	MSMS	A375_MHC_IP_R2	2	770.9529418945312	2	770.952218	1539.88988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.67	1	134.81	134.31	135.31	0.13901								0	0	0	0.16358	1	52972	52972		0	0	1		+		28074	23748	19966	20132	27546	27546					0.14153412030555046
KWKMRRNKFWI	11	Unmodified	_KWKMRRNKFWI_					0	0	0			REV__HOXA7|p.Q179K|1|0.39|ENSG00000122592|chr7:27155067-27155067|G/T|missense_variant	REV__HOXA7|p.Q179K|1|0.39|ENSG00000122592|chr7:27155067-27155067|G/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	532.1637573242188	3	531.638007	1591.89219	-0.97703	-0.00051943	-3.8945	-0.0020705	-4.8715	-0.0025899	531.6351433469646	61.438	0.25263	62.183	61.97	62.223	0.74503					7	4	2	0	0	0	1.001	1	23228	23228		0.50596	0.09769	1	959050	+		28075	26753	19967	20133	27547	27547					0.1199212444398654
KWKQVLKR	8	Unmodified	_KWKQVLKR_					0	0	0			REV__ENST00000336032.3_1_6:89793930-89794134:+|nuORF	REV__ENST00000336032.3_1_6:89793930-89794134:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	362.9559326171875	3	362.569588	1084.68693	-0.38538	-0.00013973	-0.99089	-0.00035927	-1.3763	-0.000499	362.56909221061187	18.855	0.41046	19.458	19.423	19.833	0.60308					19	9	3	0	0	0	0.77374	1	5819	5819		13.906	3.8321	1	74528000	+		28076	23676	19968	20134	27548	27548					0.1479771397607692
KWKWWEEERY	10	Unmodified	_KWKWWEEERY_					0	0	0		ENSG00000198900|ENST00000361337|TOP1;TOP1|p.K239Vfs*4|1|0.12|ENSG00000198900|chr20:41092572-41092573|AA/-|frameshift_variant	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MSMS	A375_MHC_IP_R2	2	513.9724731445312	3	513.917493	1538.73065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.105	1	44.874	44.374	45.374	0.7691								0	0	0	0.15583	1	16452	16452		1.9064	0.45126	1				28077	9362	19969	20135	27549	27549					-0.017167661081202823
KWKYASNRR	9	Unmodified	_KWKYASNRR_					0	0	0			REV__CON__Q3T052	REV__CON__Q3T052	MSMS	A375_MHC_IP_R2	2	403.58770751953125	3	403.559751	1207.65742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.535	1	28.214	27.714	28.714	0.67857								0	0	0	0.15486	1	9418	9418		4.5289	0.94181	1		+	+	28078	15888	19970	20136	27550	27550					0.061901499599116505
KWLFNRQYESL	11	Unmodified	_KWLFNRQYESL_					0	0	0			REV__ENST00000541087.1_1_12:68724821-68726025:-|nuORF	REV__ENST00000541087.1_1_12:68724821-68726025:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	495.15069580078125	3	495.261259	1482.76195	-0.48346	-0.00023944	-4.1347	-0.0020477	-4.6181	-0.0022872	495.26099334958883	41.788	0.8182	42.562	42.249	43.067	0.77451					28	15	4	0	0	0	0.99847	1	15630	15630		2.8433	0.21205	1	7204400	+		28079	17676	19971	20137	27551	27551					0.03987806926011217
KWLNKDYASV	10	Unmodified	_KWLNKDYASV_					0	0	0			REV__tr|U7SGF5|U7SGF5_FUSNUDUF4015domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02285PE=4SV=1	REV__tr|U7SGF5|U7SGF5_FUSNUDUF4015domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02285PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	408.65283203125	3	408.552151	1222.63462	-0.36418	-0.00014879	-0.05341	-2.1821E-05	-0.41759	-0.00017061	408.5521342201279	38.431	0.55796	39.205	38.895	39.453	0.77451					18	10	2	0	0	0	0.7086	1	14044	14044		8.4443	2.2525	1	8878000	+		28080	28183	19972	20138	27552	27552					0.032210860517807305
KWLYRHRKRFF	11	Unmodified	_KWLYRHRKRFF_					0	0	0			REV__ENST00000438724.5_1_13:79951611-79952941:-|nuORF	REV__ENST00000438724.5_1_13:79951611-79952941:-|nuORF	MSMS	A375_MHC_IP_R2	2	818.9695434570312	2	818.970411	1635.92627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.432	1	55.182	54.682	55.682	0.75075								0	0	0	0.1636	1	20539	20539		0	0	1		+		28081	24788	19973	20139	27553	27553					0.1337428892720709
KWRDSFGTL	9	Unmodified	_KWRDSFGTL_					0	0	0		ENST00000416587.5_1_2:7073283-7073358:+|nuORF	ENST00000416587.5_1_2:7073283-7073358:+|nuORF	ENST00000416587.5_1_2:7073283-7073358:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	370.92962646484375	3	370.529458	1108.56654	0.37971	0.00014069	-0.040275	-1.4923E-05	0.33944	0.00012577	370.529381525125	35.001	0.81442	35.001	34.708	35.522	0					32	15	3	0	0	0	0.72761	1	11584	11584		4.5289	1.2092	1	7961800			28082	11691	19974	20140	27554	27554					0.016602611918187904
KWRDYDRYYER	11	Unmodified	_KWRDYDRYYER_					0	0	0		ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	MSMS	A375_MHC_IP_R1	1	550.6168823242188	3	550.598823	1648.77464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.048	1	82.048	81.548	82.548	0								0	0	0	0.16352	1	29993	29993		0.40827	0.31342	1				28083	1967	19975	20141	27555	27555					-0.023797816817705097
KWRDYNTQVVY	11	Unmodified	_KWRDYNTQVVY_					0	0	0			REV__nc|ENSG00000104763|Q13510-3|ASAH1	REV__nc|ENSG00000104763|Q13510-3|ASAH1	MSMS	A375_MHC_IP_R1	1	736.65869140625	2	736.370058	1470.72556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.922	1	95.922	95.422	96.422	0								0	0	0	0.16269	1	35255	35255		1.1933	0	1		+		28084	17336	19976	20142	27556	27556					0.009029300292695552
KWRDYYRRRH	10	Unmodified	_KWRDYYRRRH_					0	0	0		nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;ENST00000563542.5_1_15:72185266-72338904:-|nuORF	nc|ENSG00000066933|B2RTY4-5|MYO9A	nc|ENSG00000066933|B2RTY4-5|MYO9A	MSMS	A375_MHC_IP_R1	1	512.64794921875	3	512.607875	1534.8018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.677	1	44.677	44.177	45.177	0								0	0	0	0.15541	1	15599	15599		1.5923	0.37745	1				28085	1423	19977	20143	27557	27557					0.055787914398933935
KWRDYYRRRH	10	Unmodified	_KWRDYYRRRH_					0	0	0		nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;ENST00000563542.5_1_15:72185266-72338904:-|nuORF	nc|ENSG00000066933|B2RTY4-5|MYO9A	nc|ENSG00000066933|B2RTY4-5|MYO9A	MSMS	A375_MHC_IP_R2	2	512.64794921875	3	512.607875	1534.8018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.872	1	44.641	44.141	45.141	0.7691								0	0	0	0.15541	1	16360	16360		1.5923	0	1				28086	1423	19977	20143	27558	27558					0.055787914398933935
KWRDYYRRRHM	11	Unmodified	_KWRDYYRRRHM_					0	0	0		nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;ENST00000563542.5_1_15:72185266-72338904:-|nuORF	nc|ENSG00000066933|B2RTY4-5|MYO9A	nc|ENSG00000066933|B2RTY4-5|MYO9A	MSMS	A375_MHC_IP_R2	2	833.8897094726562	2	833.928417	1665.84228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.45	1	122.83	122.33	123.33	0.3766								0	0	0	0.16297	1	46927	46927		3.2813	2.2098	1				28087	1423	19978	20144	27559	27559					0.03599389768010042
KWRFIRNWQRW	11	Unmodified	_KWRFIRNWQRW_					0	0	0			REV__ENSG00000081248|ENST00000362061|CACNA1S	REV__ENSG00000081248|ENST00000362061|CACNA1S	MULTI-SECPEP	A375_MHC_IP_R1	1	558.5355224609375	3	559.307537	1674.90078	-0.6154	-0.0003442	-0.23618	-0.0001321	-0.85158	-0.00047629	559.3086833641297	91.298	0.35493	91.298	91.199	91.554	0					8	6	2	0	0	0	1.0015	1	33515	33515		0.094841	0.094841	1	455710	+		28088	16772	19979	20145	27560	27560					0.0903281440482715
KWRLLKRQ	8	Unmodified	_KWRLLKRQ_					0	0	0			REV__ENSG00000135912|ENST00000392102|TTLL4	REV__ENSG00000135912|ENST00000392102|TTLL4	MULTI-SECPEP	A375_MHC_IP_R2	2	376.2489318847656	3	376.576854	1126.70873	-0.10428	-3.927E-05	1.6701	0.00062892	1.5658	0.00058965	376.9128444699534	23.164	0.3047	23.794	23.675	23.979	0.63014					8	5	2	0	0	0	0.972	1	7379	7379		9.3831	0	1	844200	+		28089	18897	19980	20146	27561	27561					0.15044518724653244
KWRRLKREKYY	11	Unmodified	_KWRRLKREKYY_					0	0	0			REV__WDR59|p.S624L|1|0.22|ENSG00000103091|chr16:74893808-74893808|G/A|missense_variant	REV__WDR59|p.S624L|1|0.22|ENSG00000103091|chr16:74893808-74893808|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	542.7076416015625	3	542.651081	1624.93141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.579	1	87.579	87.079	88.079	0								0	0	0	0.16358	1	32137	32137		0.094841	0	1		+		28090	28994	19981	20147	27562	27562					0.14394547999245333
KWRRRRRRRRA	11	Unmodified	_KWRRRRRRRRA_					0	0	0		ENST00000306085.10_3_7:100730337-100730388:+|nuORF	ENST00000306085.10_3_7:100730337-100730388:+|nuORF	ENST00000306085.10_3_7:100730337-100730388:+|nuORF	MSMS	A375_MHC_IP_R1	1	827.0223388671875	2	827.022698	1652.03084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.347	1	42.347	41.847	42.847	0								0	0	0	0.1636	1	14672	14672		0	0	1				28091	10573	19982	20148	27563	27563					0.2309084824717047
KWSPFSSR	8	Unmodified	_KWSPFSSR_					0	0	0			REV__ENSG00000178971|ENST00000651323|CTC1	REV__ENSG00000178971|ENST00000651323|CTC1	MULTI-MSMS	A375_MHC_IP_R2	2	498.67877197265625	2	497.758884	993.503215	-0.40669	-0.00020243	-0.21786	-0.00010844	-0.62454	-0.00031087	497.758598115722	69.144	0.7098	69.879	69.575	70.285	0.73511					24	13	3	0	0	0	0.77562	1	26198	26198		10.824	0	1	2037700	+		28092	21530	19983	20149	27564	27564					0.006203204745702351
KWSYVESPSML	11	Unmodified	_KWSYVESPSML_					0	0	0			REV__ENSG00000102763|ENST00000379310|VWA8	REV__ENSG00000102763|ENST00000379310|VWA8	MULTI-MSMS	A375_MHC_IP_R1	1	663.8677978515625	2	663.823563	1325.63257	-0.53825	-0.00035731	1.0895	0.00072322	0.55121	0.00036591	663.8239971433142	99.901	0.60646	99.901	99.723	100.33	0					18	11	2	0	0	0	0.72565	1	36661	36661		13.042	1.5478	1	1846900	+		28093	17230	19984	20150	27565	27565					-0.017217107483247673
KWVDHQTEKG	10	Unmodified	_KWVDHQTEKG_					0	0	0			REV__ENSG00000172578|ENST00000341319|KLHL6	REV__ENSG00000172578|ENST00000341319|KLHL6	MULTI-SECPEP	A375_MHC_IP_R1	1	409.925537109375	3	409.875405	1226.60439	-0.085867	-3.5195E-05	-0.11817	-4.8437E-05	-0.20404	-8.3631E-05	409.875433707038	31.224	0.70842	31.224	30.959	31.667	0					37	13	4	0	0	0	0.88918	1	10054	10054		11.518	2.5416	1	8397100	+		28094	21158	19985	20151	27566	27566					0.00014727386610502435
KWVRELKW	8	Unmodified	_KWVRELKW_					0	0	0			REV__ENST00000322348.5_1_5:74325594-74325678:-|nuORF	REV__ENST00000322348.5_1_5:74325594-74325678:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	382.9448547363281	3	382.225709	1143.6553	0.27052	0.0001034	-0.78159	-0.00029874	-0.51107	-0.00019535	382.2254074475692	46.49	0.55337	46.49	46.094	46.647	0					20	10	3	0	0	0	0.75801	1	16184	16184		18.146	18.146	1	4227700	+		28095	23579	19986	20152	27567	27567					0.08921721222100132
KWWKWLRQKRW	11	Unmodified	_KWWKWLRQKRW_					0	0	0			REV__chr12:54283132-54283827|472|74.03|0.0|22.82|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54283132-54283827|472|74.03|0.0|22.82|+|1|HNRNPA1,HNRNPA1|1	MSMS	A375_MHC_IP_R1	1	850.6317138671875	2	850.986061	1699.95757	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.01	1	113.01	112.51	113.51	0								0	0	0	0.1636	1	41423	41423		0	0	1		+		28096	15695	19987	20153	27568	27568					0.13558861961314506
KWWQWWIWWW	10	Unmodified	_KWWQWWIWWW_					0	0	0			REV__chr12:54282841-54283827|472|22.72|0.0|21.12|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54282841-54283827|472|22.72|0.0|21.12|+|1|HNRNPA1,HNRNPA1|1	MSMS	A375_MHC_IP_R1	1	845.798583984375	2	845.908956	1689.80336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.94	1	130.94	130.44	131.44	0								0	0	0	0.15628	1	50467	50467		0.45834	0.45834	1		+		28097	15693	19988	20154	27569	27569					-0.01394967524038293
KWWQWWIWWW	10	Unmodified	_KWWQWWIWWW_					0	0	0			REV__chr12:54282841-54283827|472|22.72|0.0|21.12|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54282841-54283827|472|22.72|0.0|21.12|+|1|HNRNPA1,HNRNPA1|1	MSMS	A375_MHC_IP_R2	2	845.7044067382812	2	845.908956	1689.80336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.24	1	112.97	112.47	113.47	0.72458								0	0	0	0.15642	1	42316	42316		0	0	1		+		28098	15693	19988	20154	27570	27570					-0.01394967524038293
KWWRWFQKWWP	11	Unmodified	_KWWRWFQKWWP_					0	0	0			REV__chr12:54282823-54283812|100|241.53|0.0|24.53|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54282823-54283812|100|241.53|0.0|24.53|+|1|HNRNPA1,HNRNPA1|1	MULTI-SECPEP	A375_MHC_IP_R1	1	579.3678588867188	3	578.63325	1732.87792	-0.27321	-0.00015809	0.74453	0.00043081	0.47132	0.00027272	578.6335902968806	65.051	0.45645	65.051	64.8	65.257	0					18	8	3	0	0	0	1.0014	1	23554	23554		0.08335	0.08335	1	3400000	+		28099	15691	19989	20155	27571	27571					0.040797952873390386
KWWRWLRRR	9	Unmodified	_KWWRWLRRR_					0	0	0			REV__chr12:54283225-54283827|472|59.15|0.0|22.5|+|1|HNRNPA1,HNRNPA1|2	REV__chr12:54283225-54283827|472|59.15|0.0|22.5|+|1|HNRNPA1,HNRNPA1|2	MULTI-SECPEP	A375_MHC_IP_R2	2	481.1903991699219	3	481.617935	1441.83197	-0.38041	-0.00018321	-0.20973	-0.00010101	-0.59014	-0.00028422	481.6178679547582	141.74	2.8474	141.77	140.95	143.8	0.030731					64	55	2	0	0	0	0.81858	1	56169	56169		0.26902	0	1	1392700	+		28100	15696	19990	20156	27572	27572					0.12873194895746565
KWWWWPQWWLW	11	Unmodified	_KWWWWPQWWLW_					0	0	0			REV__chr12:54282823-54283827|472|43.37|0.0|22.05|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54282823-54283827|472|43.37|0.0|22.05|+|1|HNRNPA1,HNRNPA1|1	MSMS	A375_MHC_IP_R1	1	596.538330078125	3	596.625984	1786.85612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.13	1	100.13	99.633	100.63	0								0	0	0	0.1635	1	36799	36799		0.50596	0.051438	1		+		28101	15692	19991	20157	27573	27573					-0.005830094612292669
KWYPRYKL	8	Unmodified	_KWYPRYKL_					0	0	0			REV__ENSG00000197653|ENST00000673944|DNAH10	REV__ENSG00000197653|ENST00000673944|DNAH10	MSMS	A375_MHC_IP_R1	1	385.2689514160156	3	385.222076	1152.6444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.756	1	32.756	32.256	33.256	0								0	0	0	0.16876	1	10613	10613		6.7232	0.09279	1		+		28102	22307	19992	20158	27574	27574					0.07418318847840055
KWYYYFTILEG	11	Unmodified	_KWYYYFTILEG_					0	0	0			REV__ENSG00000142599|ENST00000400908|RERE	REV__ENSG00000142599|ENST00000400908|RERE	MULTI-SECPEP	A375_MHC_IP_R1	1	742.2686767578125	2	741.868828	1481.7231	-0.38365	-0.00028462	-0.72665	-0.00053908	-1.1103	-0.0008237	741.8682399615726	20.716	0.61232	20.716	20.384	20.997	0					21	11	2	0	0	0	0.99985	1	5314	5314		1.0715	1.0715	1	3184300	+		28103	19313	19993	20159	27575	27575					0.0015108157158465474
KWYYYFTILEG	11	Unmodified	_KWYYYFTILEG_					0	0	0			REV__ENSG00000142599|ENST00000400908|RERE	REV__ENSG00000142599|ENST00000400908|RERE	MULTI-MSMS	A375_MHC_IP_R2	2	742.769287109375	2	741.868828	1481.7231	-1.1287	-0.00083732	-0.51386	-0.00038122	-1.6425	-0.0012185	741.868607675683	19.29	0.55727	19.893	19.633	20.19	0.60308					21	10	3	0	0	0	0.73795	1	5990	5990		1.3295	0.13619	1	3550500	+		28104	19313	19993	20159	27576	27576					0.0015108157158465474
KYADEDEETL	10	Unmodified	_KYADEDEETL_					0	0	0			REV__ENST00000437011.1_1_10:118509989-118510190:+|nuORF	REV__ENST00000437011.1_1_10:118509989-118510190:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	606.6670532226562	2	606.766965	1211.51938	-0.31944	-0.00019383	2.8427	0.0017248	2.5232	0.001531	606.7686825819916	73.26	0.30477	73.26	73.082	73.386	0					8	5	2	0	0	0	0.70496	1	26674	26674		10.074	2.7847	1	1265400	+		28105	24771	19994	20160	27577	27577					-0.07792107660520742
KYCCGIQHY	9	Unmodified	_KYCCGIQHY_					0	0	0			REV__ENSG00000119917|ENST00000371818|IFIT3	REV__ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	A375_MHC_IP_R2	2	557.6875	2	557.744062	1113.47357	-1.2927	-0.00072099	-0.3358	-0.00018729	-1.6285	-0.00090828	557.7439629734525	28.532	0.50355	29.219	29.019	29.522	0.68742					13	9	2	0	0	0	0.46038	1	9902	9902		21.747	0	1	11370000	+		28106	18103	19995	20161	27578	27578					-0.07862702857437398
KYDLCDTTSN	10	Unmodified	_KYDLCDTTSN_					0	0	0			REV__nc|ENSG00000165588|P32243|OTX2	REV__nc|ENSG00000165588|P32243|OTX2	MSMS	A375_MHC_IP_R2	2	580.2290649414062	2	580.250428	1158.4863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.36	1	142.39	141.89	142.89	0.030731								0	0	0	0.15465	1	55653	55653		5.7319	0	1		+		28107	20598	19996	20162	27579	27579					-0.08660012984205423
KYEDLYAFSYN	11	Unmodified	_KYEDLYAFSYN_					0	0	0		nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6	nc|ENSG00000139505|Q9Y217-2|MTMR6	nc|ENSG00000139505|Q9Y217-2|MTMR6	MULTI-SECPEP	A375_MHC_IP_R1	1	707.219970703125	2	706.822075	1411.6296	-0.76996	-0.00054422	-0.47458	-0.00033544	-1.2445	-0.00087966	706.8216624483554	124.98	0.60041	124.98	124.75	125.35	0					29	11	4	0	0	0	0.82939	1	47222	47222		29.841	7.1825	1	320020000			28108	5080	19997	20163	27580	27580					-0.059752626014642374
KYEKKINYFHR	11	Unmodified	_KYEKKINYFHR_					0	0	0			REV__tr|U7ST35|U7ST35_FUSNUUvrD-likehelicaseATP-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01268PE=4SV=1	REV__tr|U7ST35|U7ST35_FUSNUUvrD-likehelicaseATP-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01268PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	763.3386840820312	2	763.417343	1524.82013	-0.75359	-0.00057531	1.028	0.00078477	0.27438	0.00020947	763.9198142007683	133.79	0.25246	133.79	133.66	133.91	0					8	4	3	0	0	0	0.7342	1	51624	51624		4.897	1.9018	1	5062800	+		28109	28457	19998	20164	27581	27581					0.07871488571254304
KYEKKINYFHR	11	Unmodified	_KYEKKINYFHR_					0	0	0			REV__tr|U7ST35|U7ST35_FUSNUUvrD-likehelicaseATP-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01268PE=4SV=1	REV__tr|U7ST35|U7ST35_FUSNUUvrD-likehelicaseATP-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01268PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	763.417343	1524.82013	-0.75359	-0.00057531	1.028	0.00078477	0.27438	0.00020947	763.9198142007683	133.79	0.25246	133.79	133.66	133.91	0	-0.017584	0.00042577	NaN	4.897	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5062800	+		28110	28457	19998	20164							0.07871488571254304
KYEKKINYFHR	11	Unmodified	_KYEKKINYFHR_					0	0	0			REV__tr|U7ST35|U7ST35_FUSNUUvrD-likehelicaseATP-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01268PE=4SV=1	REV__tr|U7ST35|U7ST35_FUSNUUvrD-likehelicaseATP-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01268PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	763.417343	1524.82013	-0.82729	-0.00063157	0.51311	0.00039172	-0.31417	-0.00023984	763.4177648656482	133.66	0.20305	133.82	133.7	133.91	0.16487	0.017584	-0.00036034	NaN	4.897	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4864700	+		28111	28457	19998	20164							0.07871488571254304
KYERNTKEWK	10	Unmodified	_KYERNTKEWK_					0	0	0			REV__tr|U7T613|U7T613_FUSNUPyruvateformate-lyase-activatingenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00053PE=3SV=1	REV__tr|U7T613|U7T613_FUSNUPyruvateformate-lyase-activatingenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00053PE=3SV=1	MSMS	A375_MHC_IP_R2	2	691.366943359375	2	691.364776	1380.715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.97	1	139.03	138.53	139.53	0.059906								0	0	0	0.15596	1	54469	54469		1.4819	0.15237	1		+		28112	28852	19999	20165	27582	27582					0.039869473748240125
KYESVPHKDF	10	Unmodified	_KYESVPHKDF_					0	0	0			REV__ENST00000593832.1_1_19:17691448-17692250:+|nuORF	REV__ENST00000593832.1_1_19:17691448-17692250:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	418.25091552734375	3	417.211906	1248.61389	0.27659	0.0001154	-0.053733	-2.2418E-05	0.22286	9.2981E-05	417.21186761369677	20.259	0.86199	20.259	19.725	20.587	0					60	16	5	0	0	0	0.57505	1	5223	5223		19.626	0.26401	1	76957000	+		28113	18532	20000	20166	27583	27583					-0.0004750432788114267
KYFEMFVNFLW	11	Unmodified	_KYFEMFVNFLW_					0	0	0		tr|U7T6J7|U7T6J7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00264PE=3SV=1	tr|U7T6J7|U7T6J7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00264PE=3SV=1	tr|U7T6J7|U7T6J7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00264PE=3SV=1	MSMS	A375_MHC_IP_R1	1	508.64154052734375	3	508.584574	1522.73189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.817	1	50.817	50.317	51.317	0								0	0	0	0.1628	1	18018	18018		4.1166	2.787	1				28114	30048	20001	20167	27584	27584					-0.008562680635577635
KYFPSRVSI	9	Unmodified	_KYFPSRVSI_					0	0	0		ENST00000451333.1_1_2:71037932-71038202:-|nuORF;nc|ENSG00000115540|Q9Y3A3-2|MOB4;nc|ENSG00000115540|Q9Y3A3-3|MOB4;ENSG00000115540|ENST00000323303|MOB4	ENST00000451333.1_1_2:71037932-71038202:-|nuORF	ENST00000451333.1_1_2:71037932-71038202:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	366.6099853515625	3	366.209836	1095.60768	0.23699	8.6789E-05	0.16188	5.9284E-05	0.39888	0.00014607	366.2098497353681	46.523	0.6599	47.288	47.008	47.668	0.76519					25	12	3	0	0	0	0.47206	1	17444	17444		32.898	20.657	1	6751400			28115	3319	20002	20168	27585	27585					0.0637002223129457
KYFPSRVSI	9	Unmodified	_KYFPSRVSI_					0	0	0		ENST00000451333.1_1_2:71037932-71038202:-|nuORF;nc|ENSG00000115540|Q9Y3A3-2|MOB4;nc|ENSG00000115540|Q9Y3A3-3|MOB4;ENSG00000115540|ENST00000323303|MOB4	ENST00000451333.1_1_2:71037932-71038202:-|nuORF	ENST00000451333.1_1_2:71037932-71038202:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	549.2108154296875	2	548.811116	1095.60768	-0.63815	-0.00035023	-0.092791	-5.0925E-05	-0.73094	-0.00040115	548.8110417640372	46.555	0.71228	47.32	47.058	47.77	0.76519					39	13	5	0	0	0	0.5205	1	17407	17407		26.021	3.2844	1	19093000			28116	3319	20002	20168	27586	27586					0.0637002223129457
KYFPVVKLV	9	Unmodified	_KYFPVVKLV_					0	0	0		ENSG00000135040|ENST00000361671|NAA35	ENSG00000135040|ENST00000361671|NAA35	ENSG00000135040|ENST00000361671|NAA35	MULTI-SECPEP	A375_MHC_IP_R2	2	546.6897583007812	2	546.844428	1091.6743	-0.80935	-0.00044259	0.43398	0.00023732	-0.37537	-0.00020527	546.8447591609373	72.955	0.25431	73.691	73.581	73.836	0.7354					7	4	2	0	0	0	0.56537	1	27721	27721		29.082	21.792	1	827040			28117	4635	20003	20169	27587	27587					0.13213257793154298
KYFRLEQL	8	Unmodified	_KYFRLEQL_					0	0	0		ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	MULTI-SECPEP	A375_MHC_IP_R1	1	549.2108154296875	2	548.811116	1095.60768	-0.50348	-0.00027631	0.0038185	2.0957E-06	-0.49966	-0.00027422	548.8111034953122	47.442	0.76428	47.442	47.055	47.819	0					36	14	3	0	0	0	0.95373	1	16672	16672		19.257	0	1	23172000			28118	8922	20004	20170	27588	27588					0.06370022231271832
KYGEPTGQCD	10	Unmodified	_KYGEPTGQCD_					0	0	0			REV__FLNB|p.E2433G|1|0.31|ENSG00000136068|chr3:58168539-58168539|A/G|missense_variant	REV__FLNB|p.E2433G|1|0.31|ENSG00000136068|chr3:58168539-58168539|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	549.6312866210938	2	549.232039	1096.44952	-0.78653	-0.00043199	-0.30516	-0.00016761	-1.0917	-0.00059959	549.2317224246849	77.134	0.70783	77.877	77.354	78.062	0.74293					25	13	3	0	0	0	0.70793	1	29274	29274		8.7454	2.5396	1	3123500	+		28119	26635	20005	20171	27589	27589					-0.09484264810134846
KYGPIRQI	8	Unmodified	_KYGPIRQI_					0	0	0		ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF;SF3B6|p.G40E|1|0.66|ENSG00000115128|chr2:24074106-24074106|C/T|missense_variant	ENSG00000115128|ENST00000233468|SF3B6	ENSG00000115128|ENST00000233468|SF3B6	MULTI-MSMS	A375_MHC_IP_R1	1	488.1927795410156	2	487.792727	973.5709	-0.70503	-0.00034391	-0.2477	-0.00012083	-0.95273	-0.00046474	487.7925746624347	29.428	2.9785	29.428	29.252	32.231	0					95	58	2	0	0	0	1.7397E-05	1	9211	9211		188.08	50.493	1	2074499999.9999998			28120	3272	20006	20172	27590	27590					0.08305770405377189
KYGPIRQI	8	Unmodified	_KYGPIRQI_					0	0	0		ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF;SF3B6|p.G40E|1|0.66|ENSG00000115128|chr2:24074106-24074106|C/T|missense_variant	ENSG00000115128|ENST00000233468|SF3B6	ENSG00000115128|ENST00000233468|SF3B6	MULTI-MSMS	A375_MHC_IP_R2	2	488.1921691894531	2	487.792727	973.5709	-1.1806	-0.0005759	0.01418	6.917E-06	-1.1665	-0.00056899	487.7926890815593	28.658	2.6182	29.357	29.132	31.75	0.69872					97	51	5	0	0	0	1.2666E-05	1	9901	9901		170.55	47.455	1	1787299999.9999998			28121	3272	20006	20172	27591	27591					0.08305770405377189
KYHMKLQTWII	11	Unmodified	_KYHMKLQTWII_					0	0	0			REV__ENST00000322349.12_1_12:93205203-93206823:-|nuORF	REV__ENST00000322349.12_1_12:93205203-93206823:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	731.309326171875	2	730.907765	1459.80098	-0.61164	-0.00044705	1.7099	0.0012498	1.0983	0.00080272	731.4104785634457	111.91	0.40841	112.63	112.41	112.82	0.72458					13	7	2	0	0	0	0.72801	1	42216	42216		10.8	2.0541	1	4644800	+		28122	23580	20007	20173	27592	27592					0.08946815956005594
KYIHSANVL	9	Unmodified	_KYIHSANVL_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;ENSG00000141639|ENST00000400384|MAPK4	ENSG00000069956|ENST00000261845|MAPK6;ENSG00000141639|ENST00000400384|MAPK4	ENSG00000069956|ENST00000261845|MAPK6	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1953125	2	522.795466	1043.57638	-0.83275	-0.00043536	0.048266	2.5233E-05	-0.78449	-0.00041013	522.795477361642	30.198	0.70422	30.198	29.999	30.703	0					24	13	2	0	0	0	0.33896	1	9560	9560		40.239	9.6027	1	8564000			28123	1483;5264	20008	20174	27593	27593					0.05633449197171103
KYIHSANVL	9	Unmodified	_KYIHSANVL_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;ENSG00000141639|ENST00000400384|MAPK4	ENSG00000069956|ENST00000261845|MAPK6;ENSG00000141639|ENST00000400384|MAPK4	ENSG00000069956|ENST00000261845|MAPK6	MULTI-SECPEP	A375_MHC_IP_R2	2	523.19482421875	2	522.795466	1043.57638	-1.311	-0.00068541	-0.35749	-0.00018689	-1.6685	-0.0008723	522.7955478602719	29.353	0.70773	30.052	29.88	30.588	0.69872					34	13	4	0	0	0	0.37663	1	10248	10248		43.772	10.987	1	6536000			28124	1483;5264	20008	20174	27594	27594					0.05633449197171103
KYILRPYKVSV	11	Unmodified	_KYILRPYKVSV_					0	0	0			REV__ENST00000529845.5_1_8:38107318-38110262:+|nuORF	REV__ENST00000529845.5_1_8:38107318-38110262:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	455.1548767089844	3	455.946612	1364.81801	-0.80532	-0.00036718	-1.0452	-0.00047654	-1.8505	-0.00084373	456.28069946551807	53.454	0.5114	54.205	53.842	54.353	0.75105					11	9	2	0	0	0	0.99916	1	20109	20109		1.1098	0	1	1053300	+		28125	16843	20009	20175	27595	27595					0.15019059833434767
KYIPNRGPL	9	Unmodified	_KYIPNRGPL_					0	0	0		ENST00000491035.5_1_X:153628724-153629192:+|nuORF	ENST00000491035.5_1_X:153628724-153629192:+|nuORF	ENST00000491035.5_1_X:153628724-153629192:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	529.7108154296875	2	529.311284	1056.60801	-0.54434	-0.00028813	0.23108	0.00012231	-0.31326	-0.00016581	529.3112858288231	31.338	0.70991	31.338	31.109	31.819	0					30	13	3	0	0	0	0.50702	1	10052	10052		32.305	10.559	1	5854400			28126	12653	20010	20176	27596	27596					0.081974419511198
KYIPNRGPL	9	Unmodified	_KYIPNRGPL_					0	0	0		ENST00000491035.5_1_X:153628724-153629192:+|nuORF	ENST00000491035.5_1_X:153628724-153629192:+|nuORF	ENST00000491035.5_1_X:153628724-153629192:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	529.7107543945312	2	529.311284	1056.60801	-0.58123	-0.00030765	-0.60347	-0.00031942	-1.1847	-0.00062708	529.310928537851	30.537	0.65587	31.256	31.013	31.669	0.71857					22	12	2	0	0	0	0.39388	1	10737	10737		32.305	5.4218	1	4480300			28127	12653	20010	20176	27597	27597					0.081974419511198
KYIRNVAGLY	10	Unmodified	_KYIRNVAGLY_					0	0	0			REV__ENSG00000221866|ENST00000321063|PLXNA4	REV__ENSG00000221866|ENST00000321063|PLXNA4	MULTI-SECPEP	A375_MHC_IP_R1	1	598.1744384765625	2	598.842948	1195.67134	-0.39594	-0.00023711	0.14197	8.5016E-05	-0.25398	-0.00015209	598.8430558002455	43.984	0.25402	43.984	43.859	44.113	0					6	4	2	0	0	0	0.91909	1	15374	15374		13.906	1.6654	1	1733700	+		28128	22692	20011	20177	27598	27598					0.08133382668370359
KYIVWYFI	8	Unmodified	_KYIVWYFI_					0	0	0			REV__ENSG00000145451|ENST00000274093|GLRA3	REV__ENSG00000145451|ENST00000274093|GLRA3	MULTI-MSMS	A375_MHC_IP_R2	2	566.7152099609375	2	566.315503	1130.61645	-0.70502	-0.00039927	1.4191	0.00080368	0.71412	0.00040442	566.3160480854856	71.807	0.5564	72.541	72.213	72.77	0.73421					17	10	2	0	0	0	0.75322	1	27278	27278		19.439	1.2926	1	3302700	+		28129	19475	20012	20178	27599	27599					0.05636995867735095
KYKDIYTEL	9	Unmodified	_KYKDIYTEL_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP;nc|ENSG00000133030|Q6WCQ1-3|MPRIP;nc|ENSG00000133030|Q6WCQ1|MPRIP;nc|ENSG00000133030|Q6WCQ1-2|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-SECPEP	A375_MHC_IP_R1	1	587.213134765625	2	586.813522	1171.61249	-0.25374	-0.0001489	-0.064837	-3.8047E-05	-0.31857	-0.00018694	586.8136450337801	46.254	0.40146	46.254	46.043	46.444	0					13	7	2	0	0	0	0.3697	1	16239	16239		51.415	27.395	1	2940200			28130	4476	20013	20179	27600	27600					0.03354861583375168
KYKLKRMRWRV	11	Unmodified	_KYKLKRMRWRV_					0	0	0			REV__nc|ENSG00000136270|Q969Z0-2|TBRG4	REV__nc|ENSG00000136270|Q969Z0-2|TBRG4	MULTI-MSMS	A375_MHC_IP_R2	2	522.7096557617188	3	521.985407	1562.93439	-0.48614	-0.00025376	-0.10491	-5.4759E-05	-0.59105	-0.00030852	521.9852443242523	134.39	1.6786	134.53	133.98	135.66	0.13901					102	32	5	0	0	0	0.73924	1	52884	52884		0.094841	0.094841	1	28806000	+		28131	18927	20014	20180	27601	27601					0.17544099852352701
KYKRAPDLGS	10	Unmodified	_KYKRAPDLGS_					0	0	0			REV__nc|ENSG00000168477|P22105-1|TNXB	REV__nc|ENSG00000168477|P22105-1|TNXB	MULTI-MSMS	A375_MHC_IP_R2	2	378.9208068847656	3	378.880379	1133.61931	0.065567	2.4842E-05	1.8816	0.0007129	1.9472	0.00073774	378.88028997615635	32.34	0.66213	33.077	32.654	33.317	0.73692					27	12	3	0	0	0	0.63639	1	11470	11470		11.518	0	1	14608000	+		28132	20858	20015	20181	27602	27602					0.05784219254610434
KYKWYLKKLVF	11	Unmodified	_KYKWYLKKLVF_					0	0	0		ENSG00000174992|ENST00000400752|ZG16	ENSG00000174992|ENST00000400752|ZG16	ENSG00000174992|ENST00000400752|ZG16	MULTI-MSMS	A375_MHC_IP_R2	2	758.860107421875	2	758.457948	1514.90134	-0.70428	-0.00053416	1.019	0.00077285	0.3147	0.00023869	758.458900044841	138.76	0.40155	138.82	138.7	139.1	0.059906					12	7	2	0	0	0	0.73925	1	54414	54414		0.30703	0.30703	1	2326800			28133	7922	20016	20182	27603	27603					0.16448796281270006
KYKYIMIDEYQ	11	Unmodified	_KYKYIMIDEYQ_					0	0	0		tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	MSMS	A375_MHC_IP_R1	1	747.372314453125	2	747.370878	1492.7272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.05	1	117.05	116.55	117.55	0								0	0	0	0.15902	1	42954	42954		18.373	7.5736	1				28134	29458	20017	20183	27604	27604					0.0005480300299041119
KYLDYRRVP	9	Unmodified	_KYLDYRRVP_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	A375_MHC_IP_R1	1	404.5909423828125	3	403.89614	1208.66659	-0.57125	-0.00023073	-0.09331	-3.7687E-05	-0.66456	-0.00026841	403.89596857830975	23.288	0.5604	23.288	23.024	23.584	0					20	10	3	0	0	0	0.70886	1	6289	6289		6.6304	1.5829	1	7690300			28135	8215	20018	20184	27605	27605					0.07060498525606818
KYLKEIRAVA	10	Unmodified	_KYLKEIRAVA_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4;ENST00000550036.1_1_12:105556619-105558145:+|nuORF	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MSMS	A375_MHC_IP_R1	1	397.6045837402344	3	397.580041	1189.71829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.124	1	41.124	40.624	41.624	0								0	0	0	0.15267	1	14180	14180		12.175	2.0242	1				28136	4747	20019	20185	27606	27606					0.13102242219497384
KYLNSVQYI	9	Unmodified	_KYLNSVQYI_					0	0	0		nc|ENSG00000116191|Q86X27-3|RALGPS2;ENSG00000116191|ENST00000367635|RALGPS2;nc|ENSG00000116191|Q86X27-2|RALGPS2;ENST00000495034.5_1_1:178745899-178848128:+|nuORF	nc|ENSG00000116191|Q86X27-3|RALGPS2	nc|ENSG00000116191|Q86X27-3|RALGPS2	MULTI-MSMS	A375_MHC_IP_R2	2	564.7077026367188	2	564.308406	1126.60226	-0.79927	-0.00045104	0.57645	0.00032529	-0.22283	-0.00012574	564.3084902798938	61.279	1.0079	62.024	61.718	62.726	0.74504					30	19	3	0	0	0	0.012968	1	23197	23197		92.491	24.411	1	7673100			28137	3381	20020	20186	27607	27607					0.04402298648801661
KYLSEINYVHR	11	Unmodified	_KYLSEINYVHR_					0	0	0		EPHB3|p.M752I|1|0.38|ENSG00000182580|chr3:184580485-184580485|G/A|missense_variant	EPHB3|p.M752I|1|0.38|ENSG00000182580|chr3:184580485-184580485|G/A|missense_variant	EPHB3|p.M752I|1|0.38|ENSG00000182580|chr3:184580485-184580485|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	474.9892578125	3	474.589376	1420.7463	-0.49654	-0.00023565	0.13368	6.3444E-05	-0.36286	-0.00017221	474.58936379442906	57.746	0.40594	57.746	57.568	57.974	0					12	7	2	0	0	0	0.73494	1	20757	20757		1.9275	0.59786	1	3234000			28138	13948	20021	20187	27608	27608					0.05275520408895318
KYLSEINYVHR	11	Unmodified	_KYLSEINYVHR_					0	0	0		EPHB3|p.M752I|1|0.38|ENSG00000182580|chr3:184580485-184580485|G/A|missense_variant	EPHB3|p.M752I|1|0.38|ENSG00000182580|chr3:184580485-184580485|G/A|missense_variant	EPHB3|p.M752I|1|0.38|ENSG00000182580|chr3:184580485-184580485|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	474.589376	1420.7463	-0.98483	-0.00046739	0.12664	6.0101E-05	-0.85819	-0.00040729	474.5893601922771	56.909	0.40804	57.659	57.459	57.867	0.75015	-0.043108	-7.712E-06	NaN	1.9275	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1802000			28139	13948	20021	20187							0.05275520408895318
KYLSTCRNWY	10	Unmodified	_KYLSTCRNWY_					0	0	0		CON__Q2KJC7	CON__Q2KJC7	CON__Q2KJC7	MULTI-SECPEP	A375_MHC_IP_R1	1	445.6173400878906	3	445.216774	1332.62849	0.014504	6.4576E-06	-1.1616	-0.00051714	-1.147	-0.00051069	445.54940720999724	20.288	0.45527	20.288	20.03	20.485	0					16	8	3	0	0	0	0.94859	1	5207	5207		0.15932	0.01943	1	1630800		+	28140	611	20022	20188	27609	27609					-0.024517554513977302
KYLSVDVTKSI	11	Unmodified	_KYLSVDVTKSI_					0	0	0			REV__nc|ENSG00000144596|Q9C0E4-2|GRIP2	REV__nc|ENSG00000144596|Q9C0E4-2|GRIP2	MULTI-MSMS	A375_MHC_IP_R1	1	418.6431884765625	3	418.243094	1251.70745	0.050973	2.1319E-05	0.38868	0.00016256	0.43965	0.00018388	418.2432478533747	65.386	1.4734	65.386	64.954	66.428	0					47	28	2	0	0	0	0.72713	1	23619	23619		11.631	2.3876	1	2646800	+		28141	19433	20023	20189	27610	27610					0.09166795054557042
KYLSVQGQL	9	Unmodified	_KYLSVQGQL_					0	0	0		nc|ENSG00000137409|Q9NZJ7-3|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF	nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-3|MTCH1	MULTI-SECPEP	A375_MHC_IP_R1	1	518.6953735351562	2	518.295299	1034.57605	-0.45255	-0.00023455	-0.070853	-3.6723E-05	-0.5234	-0.00027128	518.2952341355639	51.106	0.45728	51.106	50.864	51.322	0					19	8	3	0	0	0	0.27742	1	18128	18128		43.772	5.7984	1	3685000			28142	4880	20024	20190	27611	27611					0.060140294773418645
KYLSVQGQL	9	Unmodified	_KYLSVQGQL_					0	0	0		nc|ENSG00000137409|Q9NZJ7-3|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF	nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-3|MTCH1	MULTI-SECPEP	A375_MHC_IP_R2	2	518.6948852539062	2	518.295299	1034.57605	-0.89143	-0.00046202	0.17804	9.2279E-05	-0.71338	-0.00036974	518.2953105598662	50.278	0.55722	51.032	50.753	51.311	0.75406					23	10	4	0	0	0	0.41434	1	18903	18903		39.95	1.9757	1	4376000			28143	4880	20024	20190	27612	27612					0.060140294773418645
KYNMVAADY	9	Unmodified	_KYNMVAADY_					0	0	0			REV__GRIN2A|p.L735M|1|0.47|ENSG00000183454|chr16:9798430-9798430|A/T|missense_variant	REV__GRIN2A|p.L735M|1|0.47|ENSG00000183454|chr16:9798430-9798430|A/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	537.6951293945312	2	537.749867	1073.48518	-1.0791	-0.00058029	-0.25157	-0.00013528	-1.3307	-0.00071557	537.7497477269069	62.121	0.55661	62.864	62.471	63.028	0.74263					14	10	2	0	0	0	0.65721	1	23554	23554		10.824	1.4765	1	909610	+		28144	26712	20025	20191	27613	27613					-0.04862182562465023
KYNNNIIY	8	Unmodified	_KYNNNIIY_					0	0	0		ENST00000266659.7_2_12:75893342-75893732:+|nuORF	ENST00000266659.7_2_12:75893342-75893732:+|nuORF	ENST00000266659.7_2_12:75893342-75893732:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	521.6712646484375	2	521.271824	1040.5291	-0.63141	-0.00032914	-0.42061	-0.00021925	-1.052	-0.00054838	521.2715716551824	80.859	0.55931	80.859	80.592	81.151	0					22	10	3	0	0	0	0.91495	1	29535	29535		24.674	0.65332	1	5183300			28145	10355	20026	20192	27614	27614					0.010451699261921021
KYNNNIIY	8	Unmodified	_KYNNNIIY_					0	0	0		ENST00000266659.7_2_12:75893342-75893732:+|nuORF	ENST00000266659.7_2_12:75893342-75893732:+|nuORF	ENST00000266659.7_2_12:75893342-75893732:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	521.6708984375	2	521.271824	1040.5291	-0.58206	-0.00030341	-1.8418	-0.00096008	-2.4239	-0.0012635	521.2713606197915	79.978	0.76231	80.723	80.299	81.062	0.74474					28	14	3	0	0	0	0.91495	1	30368	30368		24.674	8.8267	1	5875900			28146	10355	20026	20192	27615	27615					0.010451699261921021
KYNRGLTVV	9	Unmodified	_KYNRGLTVV_					0	0	0		nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS;ENST00000487002.1_1_1:155279855-155282231:+|nuORF;ENST00000471117.5_1_1:155278696-155288124:+|nuORF;ENST00000461507.5_1_1:155279855-155288124:+|nuORF;ENST00000470171.5_1_1:155279855-155288545:+|nuORF	nc|ENSG00000160752|P14324-2|FDPS	nc|ENSG00000160752|P14324-2|FDPS	MULTI-MSMS	A375_MHC_IP_R1	1	525.7084350585938	2	525.308741	1048.60293	-0.84344	-0.00044306	0.035972	1.8896E-05	-0.80746	-0.00042417	525.3086601513902	29.874	0.20049	29.874	29.748	29.949	0					6	3	2	0	0	0	0.11629	1	9429	9429		47.749	9.7747	1	7111600			28147	6439	20027	20193	27616	27616					0.08057138088520333
KYQEVTNNL	9	Unmodified	_KYQEVTNNL_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-SECPEP	A375_MHC_IP_R1	1	555.1847534179688	2	554.785296	1107.55604	-0.65319	-0.00036238	-0.058488	-3.2448E-05	-0.71167	-0.00039483	554.7852416124401	32.176	0.46187	32.176	31.921	32.383	0					20	8	3	0	0	0	0.013591	1	10365	10365		106.94	28.212	1	10032000			28148	4678	20028	20194	27617	27617					0.006562337467130419
KYQEVTNNL	9	Unmodified	_KYQEVTNNL_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1846313476562	2	554.785296	1107.55604	-0.80146	-0.00044464	0.117	6.4909E-05	-0.68446	-0.00037973	554.7853447558346	31.44	0.40823	32.158	31.974	32.383	0.71857					18	7	3	0	0	0	0.022401	1	11106	11106		89.401	29.327	1	9782600			28149	4678	20028	20194	27618	27618					0.006562337467130419
KYQIHKKFFD	10	Unmodified	_KYQIHKKFFD_					0	0	0			REV__ENST00000498747.1_1_10:12259419-12280480:+|nuORF	REV__ENST00000498747.1_1_10:12259419-12280480:+|nuORF	MSMS	A375_MHC_IP_R2	2	677.3685913085938	2	677.36933	1352.72411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.66	1	121.11	120.61	121.61	0.44488								0	0	0	0.15288	1	46071	46071		11.495	2.1116	1		+		28150	19753	20029	20195	27619	27619					0.06185340731144606
KYQILKTYY	9	Unmodified	_KYQILKTYY_					0	0	0		tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	MSMS	A375_MHC_IP_R1	1	610.5841064453125	2	610.339707	1218.66486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.683	1	90.683	90.183	91.183	0								0	0	0	0.15486	1	33327	33327		7.9102	2.1783	1				28151	29877	20030	20196	27620	27620					0.0642744471701917
KYQRIKGFP	9	Unmodified	_KYQRIKGFP_					0	0	0		SULT6B1|p.M106I|1|0.13|ENSG00000138068|chr2:37183509-37183509|C/T|missense_variant	SULT6B1|p.M106I|1|0.13|ENSG00000138068|chr2:37183509-37183509|C/T|missense_variant	SULT6B1|p.M106I|1|0.13|ENSG00000138068|chr2:37183509-37183509|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	379.24530029296875	3	379.557348	1135.65021	-0.12893	-4.8935E-05	-0.28378	-0.00010771	-0.41271	-0.00015665	379.5572571521381	33.17	0.40814	33.922	33.686	34.095	0.75225					14	7	3	0	0	0	0.7235	1	11787	11787		4.897	0.49086	1	2806600			28152	29270	20031	20197	27621	27621					0.08781417359500665
KYRKKRNKFRE	11	Unmodified	_KYRKKRNKFRE_					0	0	0			REV__ENSG00000166012|ENST00000448108|TAF1D	REV__ENSG00000166012|ENST00000448108|TAF1D	MULTI-MSMS	A375_MHC_IP_R1	1	776.8646240234375	2	776.962783	1551.91101	-0.40715	-0.00031634	2.9511	0.0022929	2.5439	0.0019765	777.4658375762505	118.45	0.60846	118.45	118.17	118.78	0					13	11	2	0	0	0	0.73672	1	43647	43647		2.4985	1.5362	1	197660000	+		28153	20644	20032	20198	27622	27622					0.15713377339375256
KYRKKRNKFRE	11	Unmodified	_KYRKKRNKFRE_					0	0	0			REV__ENSG00000166012|ENST00000448108|TAF1D	REV__ENSG00000166012|ENST00000448108|TAF1D	MULTI-SECPEP	A375_MHC_IP_R1	1	777.5925903320312	2	776.962783	1551.91101	-0.40715	-0.00031634	2.9511	0.0022929	2.5439	0.0019765	777.4658375762505	118.45	0.60846	118.45	118.17	118.78	0					13	11	2	0	0	0	1.0013	1	43608	43608		2.4985	0	1	197660000	+		28154	20644	20032	20198	27623	27623					0.15713377339375256
KYRLPKWFLF	10	Unmodified	_KYRLPKWFLF_					0	0	0			REV__SLC6A18|p.L537F|1|0.18|ENSG00000164363|chr5:1244720-1244720|C/T|missense_variant	REV__SLC6A18|p.L537F|1|0.18|ENSG00000164363|chr5:1244720-1244720|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	699.80810546875	2	699.408258	1396.80196	-0.93816	-0.00065616	0.78834	0.00055137	-0.14982	-0.00010478	699.4090081510284	138.54	0.65959	138.54	138.31	138.97	0					20	12	2	0	0	0	0.95014	1	53226	53226		0.45834	0.10771	1	2033400	+		28155	28001	20033	20199	27624	27624					0.11943398387211346
KYRLPKWFLF	10	Unmodified	_KYRLPKWFLF_					0	0	0			REV__SLC6A18|p.L537F|1|0.18|ENSG00000164363|chr5:1244720-1244720|C/T|missense_variant	REV__SLC6A18|p.L537F|1|0.18|ENSG00000164363|chr5:1244720-1244720|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	466.39727783203125	3	466.607931	1396.80196	-0.45296	-0.00021135	0.38036	0.00017748	-0.0726	-3.3876E-05	466.60814390533204	146.86	0.14888	146.88	146.76	146.91	0.019913					18	16	2	0	0	0	0.95063	1	57141	57141		0.13989	0.04505	1	75082	+		28156	28001	20033	20199	27625	27625					0.11943398387211346
KYRLPKWFLF	10	Unmodified	_KYRLPKWFLF_					0	0	0			REV__SLC6A18|p.L537F|1|0.18|ENSG00000164363|chr5:1244720-1244720|C/T|missense_variant	REV__SLC6A18|p.L537F|1|0.18|ENSG00000164363|chr5:1244720-1244720|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	466.1510009765625	3	466.607931	1396.80196	-0.45255	-0.00021116	0.48861	0.00022799	0.036063	1.6827E-05	466.9425430806043	138.56	2.7841	138.65	137.45	140.24	0.083969					97	54	2	0	0	0	0.95063	1	54805	54805		0.13989	0.13989	1	5156200	+		28157	28001	20033	20199	27626	27626					0.11943398387211346
KYRRYRIWKRR	11	Unmodified	_KYRRYRIWKRR_					0	0	0			REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	MULTI-MSMS	A375_MHC_IP_R1	1	561.0703125	3	561.00597	1679.99608	-0.83087	-0.00046612	-1.9914	-0.0011172	-2.8223	-0.0015833	561.0046210582532	140.74	0.15558	140.74	140.65	140.8	0					4	2	2	0	0	0	0.73934	1	54060	54060		0	0	1	435500	+		28158	22570	20034	20200	27627	27627					0.1832816759583693
KYRSKKRKRK	10	Unmodified	_KYRSKKRKRK_					0	0	0			REV__nc|ENSG00000112715|P15692-6|VEGFA	REV__nc|ENSG00000112715|P15692-6|VEGFA	MSMS	A375_MHC_IP_R1	1	689.448486328125	2	689.449311	1376.88407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.8	1	120.8	120.3	121.3	0								0	0	0	0.15629	1	44791	44791		0.40072	0.093686	1		+		28159	17751	20035	20201	27628	27628					0.2107031351886235
KYRVEKLERS	10	Unmodified	_KYRVEKLERS_					0	0	0		ENSG00000153684|ENST00000526619|GOLGA8F;ENSG00000183629|ENST00000525590|GOLGA8G;nc|ENSG00000290359|Q0D2H9|GOLGA8DP	ENSG00000153684|ENST00000526619|GOLGA8F	ENSG00000153684|ENST00000526619|GOLGA8F	MULTI-MSMS	A375_MHC_IP_R1	1	654.7749633789062	2	654.375143	1306.73573	-0.67495	-0.00044167	-0.75735	-0.00049559	-1.4323	-0.00093726	654.3745872190993	133.18	0.66519	133.18	132.79	133.46	0					21	12	2	0	0	0	0.72006	1	51346	51346		3.2813	1.9518	1	12015000			28160	6039	20036	20202	27629	27629					0.09463537754504614
KYSGVLSSI	9	Unmodified	_KYSGVLSSI_					0	0	0		nc|ENSG00000137409|Q9NZJ7-3|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-3|MTCH1	MULTI-MSMS	A375_MHC_IP_R2	2	477.66796875	2	477.26875	952.522947	-0.94105	-0.00044913	-0.012133	-5.7905E-06	-0.95318	-0.00045492	477.26864402273617	59.376	0.45341	60.123	59.946	60.4	0.74714					13	8	2	0	0	0	0.13845	1	22470	22470		43.772	1.9328	1	2829700			28161	4880	20037	20203	27630	27630					0.04478651694671498
KYSGVLSSI	9	Unmodified	_KYSGVLSSI_					0	0	0		nc|ENSG00000137409|Q9NZJ7-3|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-3|MTCH1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	477.26875	952.522947	-0.94105	-0.00044913	-0.012133	-5.7905E-06	-0.95318	-0.00045492	477.26864402273617	59.376	0.45341	60.123	59.946	60.4	0.74714	-0.10696	-0.00029443	NaN	43.772	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2829700			28162	4880	20037	20203							0.04478651694671498
KYSPGGEN	8	Unmodified	_KYSPGGEN_					0	0	0			REV__ENSG00000137055|ENST00000397292|PLAA	REV__ENSG00000137055|ENST00000397292|PLAA	MSMS	A375_MHC_IP_R2	2	426.136962890625	2	426.198325	850.382096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.775	1	43.548	43.048	44.048	0.7724								0	0	0	0.16876	1	15922	15922		20.454	3.5113	1		+		28163	18982	20038	20204	27631	27631					-0.049079269587537055
KYSPQRVGLT	10	Unmodified	_KYSPQRVGLT_					0	0	0		ENSG00000108591|ENST00000225729|DRG2;ENST00000467099.6_1_17:18003545-18010551:+|nuORF;ENST00000497744.1_1_17:18007908-18010551:+|nuORF	ENSG00000108591|ENST00000225729|DRG2	ENSG00000108591|ENST00000225729|DRG2	MULTI-MSMS	A375_MHC_IP_R1	1	384.6207275390625	3	383.552262	1147.63496	0.077611	2.9768E-05	-0.41038	-0.0001574	-0.33277	-0.00012763	383.8864491352133	36.559	1.1139	36.559	35.982	37.096	0					59	20	4	0	0	0	0.71693	1	12358	12358		4.7159	0.18705	1	6722800			28164	2820	20039	20205	27632	27632					0.0670450577167685
KYSSFISHL	9	Unmodified	_KYSSFISHL_					0	0	0			REV__nc|ENSG00000065150|O00410-2|IPO5	REV__nc|ENSG00000065150|O00410-2|IPO5	MULTI-SECPEP	A375_MHC_IP_R2	2	541.1805419921875	2	541.287474	1080.5604	-0.72123	-0.00039039	-1.8463	-0.00099939	-2.5675	-0.0013898	541.787757873818	101.21	0.86723	101.97	101.5	102.36	0.76428					22	16	2	0	0	0	0.62767	1	38232	38232		16.942	2.3606	1	1712600	+		28165	16488	20040	20206	27633	27633					0.023337429602861448
KYTGKYKS	8	Unmodified	_KYTGKYKS_					0	0	0			REV__ENSG00000156920|ENST00000394143|ADGRG4	REV__ENSG00000156920|ENST00000394143|ADGRG4	MULTI-MSMS	A375_MHC_IP_R2	2	488.1993408203125	2	487.768917	973.523281	-0.51906	-0.00025318	-2.9444	-0.0014362	-3.4635	-0.0016894	487.76875089093494	132.94	0.30452	133.1	132.94	133.25	0.16487					6	5	2	0	0	0	0.77643	1	52237	52237		7.9102	0	1	800030	+		28166	20000	20041	20207	27634	27634					0.03546071414518792
KYTNADGKKY	10	Unmodified	_KYTNADGKKY_					0	0	0			REV__nc|ENSG00000123444|Q9NVX7-1|KBTBD4	REV__nc|ENSG00000123444|Q9NVX7-1|KBTBD4	MULTI-SECPEP	A375_MHC_IP_R1	1	594.1867065429688	2	594.306395	1186.59824	-0.51771	-0.00030768	-0.14219	-8.4502E-05	-0.6599	-0.00039218	594.3063651136993	19.495	0.25331	19.495	19.318	19.571	0					7	4	2	0	0	0	0.87163	1	4730	4730		13.906	4.5229	1	4172700	+		28167	18243	20042	20208	27635	27635					0.012402091550939076
KYVAPREL	8	Unmodified	_KYVAPREL_					0	0	0		ENST00000533863.1_2_11:117074025-117074655:+|nuORF	ENST00000533863.1_2_11:117074025-117074655:+|nuORF	ENST00000533863.1_2_11:117074025-117074655:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	488.68426513671875	2	488.284734	974.554916	-0.44141	-0.00021553	-0.30491	-0.00014888	-0.74632	-0.00036441	488.28462484808483	32.946	0.4557	32.946	32.734	33.19	0					18	8	3	0	0	0	0.25559	1	10684	10684		67.344	9.8725	1	9788700			28168	13205	20043	20209	27636	27636					0.06662064168460802
KYVAPREL	8	Unmodified	_KYVAPREL_					0	0	0		ENST00000533863.1_2_11:117074025-117074655:+|nuORF	ENST00000533863.1_2_11:117074025-117074655:+|nuORF	ENST00000533863.1_2_11:117074025-117074655:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	488.6844787597656	2	488.284734	974.554916	-0.58567	-0.00028598	-0.15281	-7.4613E-05	-0.73848	-0.00036059	488.2847510600044	32.109	0.45728	32.846	32.654	33.112	0.73692					24	8	4	0	0	0	0.73227	1	11396	11396		46.021	8.047	1	10259000			28169	13205	20043	20209	27637	27637					0.06662064168460802
KYVHEKRFKE	10	Unmodified	_KYVHEKRFKE_					0	0	0			REV__ENST00000216294.4_1_14:62229123-62233722:+|nuORF	REV__ENST00000216294.4_1_14:62229123-62233722:+|nuORF	MSMS	A375_MHC_IP_R2	2	682.4427490234375	2	682.377686	1362.74082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.283	1	12.828	12.328	13.328	0.54443								0	0	0	0.15631	1	3792	3792		0.35063	0	1		+		28170	23034	20044	20210	27638	27638					0.0739584161710809
KYVPLVTGL	9	Unmodified	_KYVPLVTGL_					0	0	0		nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;nc|ENSG00000145868|Q6PIJ6-3|FBXO38;ENST00000502571.1_1_5:147784249-147790417:+|nuORF	nc|ENSG00000145868|Q6PIJ6-2|FBXO38	nc|ENSG00000145868|Q6PIJ6-2|FBXO38	MULTI-SECPEP	A375_MHC_IP_R1	1	495.7049560546875	2	495.305136	988.595718	-0.54349	-0.00026919	0.12818	6.349E-05	-0.4153	-0.0002057	495.3051383286809	80.612	0.60825	80.612	80.34	80.948	0					23	11	3	0	0	0	0.11711	1	29412	29412		69.105	27.265	1	6873000			28171	5588	20045	20211	27639	27639					0.10096405488093296
KYVPLVTGL	9	Unmodified	_KYVPLVTGL_					0	0	0		nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;nc|ENSG00000145868|Q6PIJ6-3|FBXO38;ENST00000502571.1_1_5:147784249-147790417:+|nuORF	nc|ENSG00000145868|Q6PIJ6-2|FBXO38	nc|ENSG00000145868|Q6PIJ6-2|FBXO38	MULTI-MSMS	A375_MHC_IP_R2	2	495.70477294921875	2	495.305136	988.595718	-0.38935	-0.00019285	-0.61271	-0.00030348	-1.0021	-0.00049632	495.30480641561104	79.595	0.66111	80.34	79.946	80.607	0.74474					22	12	3	0	0	0	0.040308	1	30223	30223		68.081	15.812	1	4830200			28172	5588	20045	20211	27640	27640					0.10096405488093296
KYVYVVTEL	9	Unmodified	_KYVYVVTEL_					0	0	0		ENSG00000177189|ENST00000379565|RPS6KA3	ENSG00000177189|ENST00000379565|RPS6KA3	ENSG00000177189|ENST00000379565|RPS6KA3	MULTI-MSMS	A375_MHC_IP_R2	2	557.9080810546875	2	557.313158	1112.61176	-0.75236	-0.0004193	-0.18326	-0.00010213	-0.93562	-0.00052144	557.3130847848765	76.711	0.50892	77.452	77.095	77.604	0.74052					19	9	3	0	0	0	0.082375	2	29064	29064;29087		53.833	21.679	1	2623100			28173	8067	20046	20212	27641;27642	27641					0.05996066934335431
KYYESEYYLTF	11	Unmodified	_KYYESEYYLTF_					0	0	0		tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	502.9659729003906	3	502.566014	1504.67621	-0.37723	-0.00018958	0.58521	0.0002941	0.20798	0.00010452	502.5663278224064	63.988	0.6585	63.988	63.684	64.343	0					30	12	3	0	0	0	0.73378	1	23106	23106		2.4348	1.22	1	9800400			28174	29622	20047	20213	27643	27643					-0.05593822770197221
KYYFPTTLCPY	11	Unmodified	_KYYFPTTLCPY_					0	0	0		nc|ENSG00000121236|Q9C030-3|TRIM6;nc|ENSG00000121236|Q9C030|TRIM6;ENSG00000121236|ENST00000380097|TRIM6;ENST00000481603.1_1_11:5631742-5632569:+|nuORF	nc|ENSG00000121236|Q9C030-3|TRIM6	nc|ENSG00000121236|Q9C030-3|TRIM6	MULTI-SECPEP	A375_MHC_IP_R2	2	466.2926940917969	3	465.893297	1394.65806	-0.96302	-0.00044867	-0.10349	-4.8216E-05	-1.0665	-0.00049688	465.893245690723	19.914	0.7098	20.524	20.248	20.958	0.61029					27	13	3	0	0	0	0.9907	1	6140	6140		12.856	8.4498	1	6307300			28175	3712	20048	20214	27644	27644					-0.023482362258619105
KYYLFGRNPD	10	Unmodified	_KYYLFGRNPD_					0	0	0		ENSG00000117751|ENST00000311772|PPP1R8;ENST00000236412.11_1_1:28157683-28169749:+|nuORF	ENSG00000117751|ENST00000311772|PPP1R8	ENSG00000117751|ENST00000311772|PPP1R8	MULTI-MSMS	A375_MHC_IP_R1	1	425.59405517578125	3	424.8839	1271.62987	-0.20281	-8.6171E-05	0.32476	0.00013799	0.12195	5.1816E-05	424.88403509402895	65.123	1.07	65.123	64.546	65.616	0					59	20	4	0	0	0	0.70741	1	23674	23674		8.9762	2.3164	1	12875000			28176	3511	20049	20215	27645	27645					0.004922019090372487
KYYLRESQAAK	11	Unmodified	_KYYLRESQAAK_					0	0	0		nc|ENSG00000129515|Q9UNH7-2|SNX6;ENST00000556162.5_1_14:35032330-35073396:-|nuORF;ENSG00000129515|ENST00000362031|SNX6;ENST00000555541.1_1_14:35044943-35055441:-|nuORF	nc|ENSG00000129515|Q9UNH7-2|SNX6	nc|ENSG00000129515|Q9UNH7-2|SNX6	MULTI-SECPEP	A375_MHC_IP_R2	2	452.15789794921875	3	452.91386	1355.71975	-0.30865	-0.00013979	-0.12803	-5.7988E-05	-0.43669	-0.00019778	452.9138488049009	32.718	0.45779	33.455	33.213	33.671	0.73692					14	8	2	0	0	0	0.99625	1	11701	11701		7.4771	3.89	1	2047900			28177	4194	20050	20216	27646	27646					0.05611831517626342
LAAAANHR	8	Unmodified	_LAAAANHR_					0	0	0		ENSG00000167136|ENST00000372642|ENDOG	ENSG00000167136|ENST00000372642|ENDOG	ENSG00000167136|ENST00000372642|ENDOG	MULTI-MSMS	A375_MHC_IP_R2	2	412.6300964355469	2	412.230294	822.446034	0.045511	1.8761E-05	-0.054074	-2.2291E-05	-0.0085622	-3.5296E-06	412.23021618371024	103.93	5.3908	104.69	102.92	108.31	0.76428					192	105	3	0	0	0	0.7779	1	39600	39600		2.5775	0	1	18640000			28178	7161	20051	20217	27647	27647					0.027708979888416252
LAAAAVRP	8	Unmodified	_LAAAAVRP_					0	0	0			REV__ENST00000256429.7_1_18:51750439-51750754:-|nuORF	REV__ENST00000256429.7_1_18:51750439-51750754:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	385.1400451660156	2	384.739963	767.465373	-0.31059	-0.00011949	0.34797	0.00013388	0.037388	1.4385E-05	384.7400912435997	33.114	0.45909	33.866	33.686	34.146	0.75225					14	8	2	0	0	0	0.88799	1	11878	11878		20.871	0	1	2400600	+		28179	23149	20052	20218	27648	27648					0.07233854279741081
LAAAPSPNE	9	Unmodified	_LAAAPSPNE_					0	0	0			REV__ENST00000512888.1_1_4:1165538-1166604:-|nuORF	REV__ENST00000512888.1_1_4:1165538-1166604:-|nuORF	MSMS	A375_MHC_IP_R1	1	435.28216552734375	2	435.2218	868.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.34	1	87.34	86.84	87.84	0								0	0	0	0.15486	1	32045	32045		8.5933	0	1		+		28180	20131	20053	20219	27649	27649					-0.01043067407624676
LAAAQRGH	8	Unmodified	_LAAAQRGH_					0	0	0		ENST00000459905.5_1_9:139837219-139837813:-|nuORF;ENST00000325285.7_2_9:139837107-139837825:-|nuORF	ENST00000459905.5_1_9:139837219-139837813:-|nuORF	ENST00000459905.5_1_9:139837219-139837813:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	412.63037109375	2	412.230294	822.446034	0.05977	2.4639E-05	0.089698	3.6976E-05	0.14947	6.1615E-05	412.2302615784873	108.61	2.8049	109.36	108.29	111.1	0.74683					139	54	4	0	0	0	0.77781	1	41443	41443		2.8892	0	1	9664800			28181	10723	20054	20220	27650	27650					0.02770897988852994
LAAAQRGH	8	Unmodified	_LAAAQRGH_					0	0	0		ENST00000459905.5_1_9:139837219-139837813:-|nuORF;ENST00000325285.7_2_9:139837107-139837825:-|nuORF	ENST00000459905.5_1_9:139837219-139837813:-|nuORF	ENST00000459905.5_1_9:139837219-139837813:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	412.63018798828125	2	412.230294	822.446034	0.19397	7.9962E-05	0.28926	0.00011924	0.48323	0.0001992	412.23026586285795	111.24	1.6875	111.98	111.09	112.78	0.73692					51	32	2	0	0	0	0.77781	1	41815	41815		2.8892	0	1	2146400			28182	10723	20054	20220	27651	27651					0.02770897988852994
LAAARLAAA	9	Unmodified	_LAAARLAAA_					0	0	0		ENST00000469684.1_1_15:44038662-44048907:+|nuORF;ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3	ENST00000469684.1_1_15:44038662-44048907:+|nuORF	ENST00000469684.1_1_15:44038662-44048907:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	414.25970458984375	2	414.25852	826.502486	-0.46689	-0.00019341	-0.094264	-3.905E-05	-0.56115	-0.00023246	414.25843520356744	33.559	0.70988	34.311	34.043	34.753	0.75225					33	13	4	0	0	0	0.05754	1	11986	11986		61.357	6.5839	1	38014000			28183	7148	20055	20221	27652	27652					0.08229525825493056
LAAAVGETIT	10	Unmodified	_LAAAVGETIT_					0	0	0			REV__ENSG00000089154|ENST00000300648|GCN1	REV__ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	A375_MHC_IP_R1	1	473.7099914550781	2	473.266207	944.517862	-0.25113	-0.00011885	-0.079118	-3.7444E-05	-0.33025	-0.0001563	473.26600110027715	54.088	1.1653	54.088	53.605	54.771	0					55	22	4	0	0	0	0.60556	1	19513	19513		20.454	0	1	44682000	+		28184	16904	20056	20222	27653	27653					0.04338347832026557
LAAAVNRH	8	Unmodified	_LAAAVNRH_					0	0	0			REV__ENST00000436411.5_1_7:107204485-107204728:+|nuORF	REV__ENST00000436411.5_1_7:107204485-107204728:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	426.6455993652344	2	426.245944	850.477334	-0.17846	-7.6066E-05	0.12806	5.4585E-05	-0.050395	-2.1481E-05	426.24592989023455	122.77	2.2284	123.15	122.57	124.8	0.3766					84	43	3	0	0	0	0.77717	1	47265	47265		5.2307	0.47466	1	260100000	+		28185	24764	20057	20223	27654	27654					0.0461147102294035
LAADGHPEL	9	Unmodified	_LAADGHPEL_					0	0	0		nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-13|ITGA7	nc|ENSG00000135424|Q13683-9|ITGA7	nc|ENSG00000135424|Q13683-9|ITGA7	MULTI-SECPEP	A375_MHC_IP_R1	1	462.1349792480469	2	461.735074	921.455596	-0.11287	-5.2116E-05	0.029653	1.3692E-05	-0.083216	-3.8424E-05	461.7350746057745	37.278	0.60994	37.278	36.895	37.505	0					27	11	3	0	0	0	0.20094	1	12519	12519		36.044	0	1	10976000			28186	4680	20058	20224	27655	27655					-0.00827378516294175
LAAEGRVL	8	Unmodified	_LAAEGRVL_					0	0	0		nc|ENSG00000197530|Q96AX9-8|MIB2;nc|ENSG00000197530|Q96AX9-6|MIB2;nc|ENSG00000197530|Q96AX9-3|MIB2;ENSG00000197530|ENST00000355826|MIB2;nc|ENSG00000197530|Q96AX9-10|MIB2;nc|ENSG00000197530|Q96AX9-7|MIB2;nc|ENSG00000197530|Q96AX9-4|MIB2;nc|ENSG00000197530|Q96AX9-5|MIB2;ENST00000479659.5_1_1:1561777-1565907:+|nuORF;ENST00000511502.5_1_1:1563563-1565907:+|nuORF;ENST00000506488.5_1_1:1562112-1565907:+|nuORF	nc|ENSG00000197530|Q96AX9-8|MIB2	nc|ENSG00000197530|Q96AX9-8|MIB2	MULTI-MSMS	A375_MHC_IP_R1	1	415.1505432128906	2	414.750527	827.486502	0.45646	0.00018932	-0.29182	-0.00012103	0.16463	6.8282E-05	414.75034822430564	37.275	0.81626	37.275	36.996	37.812	0					33	15	3	0	0	0	0.30248	1	12514	12514		58.679	7.8238	1	28343000			28187	9166	20059	20225	27656	27656					0.06585819588610775
LAAEGRVL	8	Unmodified	_LAAEGRVL_					0	0	0		nc|ENSG00000197530|Q96AX9-8|MIB2;nc|ENSG00000197530|Q96AX9-6|MIB2;nc|ENSG00000197530|Q96AX9-3|MIB2;ENSG00000197530|ENST00000355826|MIB2;nc|ENSG00000197530|Q96AX9-10|MIB2;nc|ENSG00000197530|Q96AX9-7|MIB2;nc|ENSG00000197530|Q96AX9-4|MIB2;nc|ENSG00000197530|Q96AX9-5|MIB2;ENST00000479659.5_1_1:1561777-1565907:+|nuORF;ENST00000511502.5_1_1:1563563-1565907:+|nuORF;ENST00000506488.5_1_1:1562112-1565907:+|nuORF	nc|ENSG00000197530|Q96AX9-8|MIB2	nc|ENSG00000197530|Q96AX9-8|MIB2	MULTI-SECPEP	A375_MHC_IP_R2	2	415.1504211425781	2	414.750527	827.486502	-0.21393	-8.8727E-05	0.0034854	1.4456E-06	-0.21044	-8.7281E-05	414.7504770179109	36.324	0.76507	37.095	36.85	37.615	0.7709					31	14	3	0	0	0	0.60242	1	13210	13210		37.974	0	1	28165000			28188	9166	20059	20225	27657	27657					0.06585819588610775
LAAEKQSLDP	10	Unmodified	_LAAEKQSLDP_					0	0	0		ENST00000564415.5_1_16:70514729-70514789:-|nuORF	ENST00000564415.5_1_16:70514729-70514789:-|nuORF	ENST00000564415.5_1_16:70514729-70514789:-|nuORF	MSMS	A375_MHC_IP_R2	2	536.6869506835938	2	536.287671	1070.56079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.928	1	29.627	29.127	30.127	0.69872								0	0	0	0.13839	1	10052	10052		22.736	1.8651	1				28189	13529	20060	20226	27658	27658					0.028331178894632103
LAAELPLR	8	Unmodified	_LAAELPLR_					0	0	0			REV__ENSG00000261150|ENST00000615648|EPPK1	REV__ENSG00000261150|ENST00000615648|EPPK1	MULTI-SECPEP	A375_MHC_IP_R2	2	442.1739501953125	2	441.774003	881.533452	-0.68382	-0.0003021	0.036917	1.6309E-05	-0.64691	-0.00028579	441.7740640845878	58.623	0.35498	59.372	59.187	59.542	0.74894					14	6	3	0	0	0	0.77651	1	22212	22212		42.095	0	1	1484100	+		28190	22909	20061	20227	27659	27659					0.08794679139759864
LAAELPLR	8	Unmodified	_LAAELPLR_					0	0	0			REV__ENSG00000261150|ENST00000615648|EPPK1	REV__ENSG00000261150|ENST00000615648|EPPK1	MULTI-MATCH	A375_MHC_IP_R1	1		2	441.774003	881.533452	-0.069535	-3.0719E-05	-0.26085	-0.00011524	-0.33039	-0.00014596	441.77386956726764	59.537	0.60937	59.537	59.346	59.955	0	0.082747	-0.00010883	NaN	42.095	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1139800	+		28191	22909	20061	20227							0.08794679139759864
LAAERKDV	8	Unmodified	_LAAERKDV_					0	0	0			REV__HEMK1|p.I196L|1|0.08|ENSG00000114735|chr3:50577545-50577545|A/C|missense_variant	REV__HEMK1|p.I196L|1|0.08|ENSG00000114735|chr3:50577545-50577545|A/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	451.16650390625	2	451.258717	900.50288	-0.41943	-0.00018927	0.026927	1.2151E-05	-0.3925	-0.00017712	451.25869586320476	35.952	1.1214	36.716	36.384	37.505	0.76338					43	21	3	0	0	0	0.93416	1	13096	13096		14.582	0	1	30270000	+		28192	26728	20062	20228	27660	27660					0.04864900754705559
LAAGGIVAV	9	Unmodified	_LAAGGIVAV_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;ENSG00000186260|ENST00000571589|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	A375_MHC_IP_R1	1	771.0338134765625	1	770.477066	769.469789	-0.42542	-0.00032778	0.41698	0.00032127	-0.0084486	-6.5095E-06	770.4773053358736	98.08	0.76241	98.08	97.794	98.557	0					32	14	3	0	0	0	0.042019	1	36103	36103		67.413	21.663	1	13988000			28193	8736	20063	20229	27661	27661					0.07583318702654651
LAAGNWRRL	9	Unmodified	_LAAGNWRRL_					0	0	0		ENST00000417036.1_1_3:9404786-9405017:+|nuORF;ENST00000345094.7_1_3:9404786-9406727:+|nuORF	ENST00000417036.1_1_3:9404786-9405017:+|nuORF	ENST00000417036.1_1_3:9404786-9405017:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	528.1709594726562	2	528.8067	1055.59885	-0.51367	-0.00027163	-1.0452	-0.00055271	-1.5589	-0.00082434	528.8059637590965	47.442	0.25261	47.442	47.315	47.567	0					6	4	2	0	0	0	0.69504	1	16657	16657		18.135	11.929	1	2426600			28194	10902	20064	20230	27662	27662					0.0732709338544737
LAAHINVVL	9	Unmodified	_LAAHINVVL_					0	0	0		tr|U7SZX8|U7SZX8_FUSNUtRNAmodificationGTPaseMnmEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmEPE=3SV=1	tr|U7SZX8|U7SZX8_FUSNUtRNAmodificationGTPaseMnmEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmEPE=3SV=1	tr|U7SZX8|U7SZX8_FUSNUtRNAmodificationGTPaseMnmEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmEPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	475.6950378417969	2	475.295102	948.575651	-0.51415	-0.00024437	1.1062	0.00052576	0.59204	0.00028139	475.29564100998994	43.833	0.45685	43.833	43.502	43.959	0					12	8	2	0	0	0	0.75466	1	15278	15278		4.3292	0	1	2245500			28195	29871	20065	20231	27663	27663					0.09930654548122675
LAAHVADRG	9	Unmodified	_LAAHVADRG_					0	0	0			REV__nc|ENSG00000001617|Q13275-2|SEMA3F	REV__nc|ENSG00000001617|Q13275-2|SEMA3F	MSMS	A375_MHC_IP_R1	1	455.1818542480469	2	455.248683	908.482814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.135	1	84.135	83.635	84.635	0								0	0	0	0.15427	1	30809	30809		14.582	3.4672	1		+		28196	16083	20066	20232	27664	27664					0.024911498147503153
LAAHVTVSIV	10	Unmodified	_LAAHVTVSIV_					0	0	0			REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	MULTI-SECPEP	A375_MHC_IP_R1	1	504.68243408203125	2	505.305667	1008.59678	-0.39445	-0.00019932	-0.25392	-0.00012831	-0.64837	-0.00032762	505.3054678261928	94.038	0.86137	94.038	93.584	94.446	0					37	16	3	0	0	0	0.76414	1	34541	34541		20.454	7.4112	1	3481400	+		28197	19606	20067	20233	27665	27665					0.09282619856981
LAAILEHSL	9	Unmodified	_LAAILEHSL_					0	0	0		ENSG00000159256|ENST00000400485|MORC3;ENST00000492336.5_1_21:37692562-37711220:+|nuORF;MORC3|p.T465Pfs*17|1|0.18|ENSG00000159256|chr21:36360240-36360240|A/-|frameshift_variant	ENSG00000159256|ENST00000400485|MORC3	ENSG00000159256|ENST00000400485|MORC3	MULTI-SECPEP	A375_MHC_IP_R1	1	484.18426513671875	2	483.784567	965.554582	-0.40086	-0.00019393	-0.41811	-0.00020227	-0.81897	-0.00039621	483.7843484446706	76.732	0.40786	76.732	76.522	76.93	0					13	7	2	0	0	0	0.40041	1	28018	28018		23.148	0	1	1252400			28198	6361	20068	20234	27666	27666					0.07042644448608826
LAAIVDLLF	9	Unmodified	_LAAIVDLLF_					0	0	0			REV__ENSG00000135519|ENST00000257981|KCNH3	REV__ENSG00000135519|ENST00000257981|KCNH3	MULTI-SECPEP	A375_MHC_IP_R2	2	487.338134765625	2	487.799686	973.584819	-0.52654	-0.00025684	-0.50689	-0.00024726	-1.0334	-0.00050411	487.7996432525031	132.72	0.15149	132.89	132.79	132.94	0.16487					4	2	2	0	0	0	0.71541	1	52231	52231		16.942	0	1	2575700	+		28199	18859	20069	20235	27667	27667					0.09697003113797109
LAALASLPSA	10	Unmodified	_LAALASLPSA_					0	0	0		ENSG00000182631|ENST00000330120|RXFP3	ENSG00000182631|ENST00000330120|RXFP3	ENSG00000182631|ENST00000330120|RXFP3	MULTI-SECPEP	A375_MHC_IP_R1	1	457.67120361328125	2	457.271293	912.528032	-0.18806	-8.5992E-05	-2.3262	-0.0010637	-2.5143	-0.0011497	457.2712724513395	43.615	0.55872	43.615	43.3	43.859	0					19	10	3	0	0	0	0.27864	1	15186	15186		41.84	0	1	4222000			28200	8426	20070	20236	27668	27668					0.06826955557289693
LAALHPGPG	9	Unmodified	_LAALHPGPG_					0	0	0			REV__ENST00000509141.5_1_16:29362993-29370594:+|nuORF	REV__ENST00000509141.5_1_16:29362993-29370594:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	417.1370544433594	2	416.73742	831.460287	-0.22624	-9.4283E-05	-0.12827	-5.3455E-05	-0.35451	-0.00014774	416.73726324850776	34.556	0.35416	35.313	35.165	35.519	0.75687					10	6	2	0	0	0	0.4782	1	12511	12511		20.871	1.6142	1	1530500	+		28201	25590	20071	20237	27669	27669					0.03781550417136259
LAALHPGPG	9	Unmodified	_LAALHPGPG_					0	0	0			REV__ENST00000509141.5_1_16:29362993-29370594:+|nuORF	REV__ENST00000509141.5_1_16:29362993-29370594:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	416.73742	831.460287	-0.22624	-9.4283E-05	-0.12827	-5.3455E-05	-0.35451	-0.00014774	416.73726324850776	34.556	0.35416	35.313	35.165	35.519	0.75687	-0.033925	5.9831E-05	NaN	20.871	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1530500	+		28202	25590	20071	20237							0.03781550417136259
LAALPRLI	8	Unmodified	_LAALPRLI_					0	0	0		LRRC32|p.D260N|1|0.12|ENSG00000137507|chr11:76660815-76660815|C/T|missense_variant;ENSG00000137507|ENST00000260061|LRRC32	LRRC32|p.D260N|1|0.12|ENSG00000137507|chr11:76660815-76660815|C/T|missense_variant	LRRC32|p.D260N|1|0.12|ENSG00000137507|chr11:76660815-76660815|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	434.1939392089844	2	433.794738	865.574923	-0.25845	-0.00011211	-0.10345	-4.4876E-05	-0.3619	-0.00015699	433.79458463053425	87.208	0.6607	87.208	86.881	87.542	0					22	12	3	0	0	0	0.8824	1	31985	31985		30.225	0	1	2988800			28203	4892	20072	20238	27670	27670					0.13675859899069565
LAALPRLI	8	Unmodified	_LAALPRLI_					0	0	0		LRRC32|p.D260N|1|0.12|ENSG00000137507|chr11:76660815-76660815|C/T|missense_variant;ENSG00000137507|ENST00000260061|LRRC32	LRRC32|p.D260N|1|0.12|ENSG00000137507|chr11:76660815-76660815|C/T|missense_variant	LRRC32|p.D260N|1|0.12|ENSG00000137507|chr11:76660815-76660815|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	433.2852478027344	2	433.794738	865.574923	-0.097506	-4.2298E-05	-0.035109	-1.523E-05	-0.13261	-5.7528E-05	433.79466941327945	86.175	0.51068	86.908	86.693	87.203	0.733					17	9	2	0	0	0	0.95423	1	32762	32762		18.135	0	1	3324900			28204	4892	20072	20238	27671	27671					0.13675859899069565
LAALPRPQL	9	Unmodified	_LAALPRPQL_					0	0	0		ENSG00000197417|ENST00000225519|SHPK	ENSG00000197417|ENST00000225519|SHPK	ENSG00000197417|ENST00000225519|SHPK	MSMS	A375_MHC_IP_R2	2	489.8963623046875	2	489.808377	977.6022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.409	1	70.143	69.643	70.643	0.73421								0	0	0	0.1499	1	26303	26303		21.747	1.293	1				28205	9155	20073	20239	27672	27672					0.11250343439451171
LAALRRFE	8	Unmodified	_LAALRRFE_					0	0	0			REV__ENST00000493076.5_1_22:35806581-35817581:+|nuORF	REV__ENST00000493076.5_1_22:35806581-35817581:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	488.68896484375	2	488.290351	974.566149	-0.24753	-0.00012087	-2.0134	-0.00098315	-2.261	-0.001104	488.2891616043892	54.73	0.40619	54.73	54.619	55.025	0					11	7	2	0	0	0	0.8957	1	19574	19574		28.487	3.813	1	2445600	+		28206	17071	20074	20240	27673	27673					0.0778488626260696
LAALRRFE	8	Unmodified	_LAALRRFE_					0	0	0			REV__ENST00000493076.5_1_22:35806581-35817581:+|nuORF	REV__ENST00000493076.5_1_22:35806581-35817581:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	488.4687805175781	2	488.290351	974.566149	-1.0095	-0.00049291	-1.6293	-0.00079557	-2.6388	-0.0012885	488.2892979006121	53.729	0.3593	54.48	54.353	54.712	0.75105					11	6	2	0	0	0	0.91495	1	20330	20330		24.674	0	1	2354100	+		28207	17071	20074	20240	27674	27674					0.0778488626260696
LAANKQTIL	9	Unmodified	_LAANKQTIL_					0	0	0		nc|ENSG00000148516|P37275-3|ZEB1;nc|ENSG00000148516|P37275-4|ZEB1;nc|ENSG00000148516|P37275-5|ZEB1;ENST00000488625.6_1_10:31676182-31816189:+|nuORF;nc|ENSG00000148516|P37275|ZEB1;ENSG00000148516|ENST00000424869|ZEB1	nc|ENSG00000148516|P37275-3|ZEB1	nc|ENSG00000148516|P37275-3|ZEB1	MULTI-SECPEP	A375_MHC_IP_R2	2	486.6971740722656	2	486.297842	970.581131	-0.64147	-0.00031195	0.059462	2.8916E-05	-0.58201	-0.00028303	486.29783259035355	67.139	0.65903	67.875	67.445	68.104	0.73631					18	12	2	0	0	0	0.24548	1	25424	25424		43.858	0	1	4427700			28208	5749	20075	20241	27675	27675					0.09466333339958055
LAAPPKRT	8	Unmodified	_LAAPPKRT_					0	0	0			REV__ENST00000544304.5_1_12:120554610-120555222:-|nuORF	REV__ENST00000544304.5_1_12:120554610-120555222:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	427.30267333984375	2	427.266345	852.518136	-0.41681	-0.00017809	0.071017	3.0343E-05	-0.3458	-0.00014775	427.2663565200278	38.959	1.2748	39.734	39.401	40.676	0.77451					54	24	4	0	0	0	0.7256	1	14513	14513		26.884	0	1	196260000	+		28209	25984	20076	20242	27676	27676					0.08597812342566158
LAAQGARVY	9	Unmodified	_LAAQGARVY_					0	0	0		nc|ENSG00000087085|P22303-4|ACHE;ENSG00000087085|ENST00000241069|ACHE;nc|ENSG00000087085|P22303-2|ACHE;nc|ENSG00000087085|P22303-3|ACHE	nc|ENSG00000087085|P22303-4|ACHE	nc|ENSG00000087085|P22303-4|ACHE	MULTI-MSMS	A375_MHC_IP_R2	2	475.166259765625	2	474.766709	947.518865	-1.0642	-0.00050523	0.55532	0.00026365	-0.50883	-0.00024158	474.7668923801428	28.545	0.25282	29.238	29.074	29.327	0.69273					6	4	2	0	0	0	0.034481	1	9885	9885		71.134	17.558	1	5573400			28210	1853	20077	20243	27677	27677					0.04300606991614586
LAAQKEAEVE	10	Unmodified	_LAAQKEAEVE_					0	0	0			REV__ENSG00000143850|ENST00000272203|PLEKHA6	REV__ENSG00000143850|ENST00000272203|PLEKHA6	MULTI-MSMS	A375_MHC_IP_R2	2	363.5926818847656	3	363.192511	1086.5557	-0.39105	-0.00014203	0.94971	0.00034493	0.55866	0.0002029	363.19273721522285	24.284	1.2706	24.928	24.194	25.465	0.64368					35	24	2	0	0	0	0.67512	1	7922	7922		9.7643	1.4778	1	5584800	+		28211	19393	20078	20244	27678	27678					0.015888140268771167
LAAQLRTAG	9	Unmodified	_LAAQLRTAG_					0	0	0		ENST00000325327.3_1_19:2430242-2430563:-|nuORF	ENST00000325327.3_1_19:2430242-2430563:-|nuORF	ENST00000325327.3_1_19:2430242-2430563:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	451.1666564941406	2	450.766709	899.518865	-0.35534	-0.00016018	-0.24526	-0.00011055	-0.6006	-0.00027073	450.7667197309202	36.833	0.50411	36.833	36.644	37.148	0					16	9	2	0	0	0	0.4261	1	12376	12376		37.974	9.4872	1	3660800			28212	10724	20079	20245	27679	27679					0.06508606991610577
LAARSIRL	8	Unmodified	_LAARSIRL_					0	0	0			REV__ENSG00000130513|ENST00000252809|GDF15	REV__ENSG00000130513|ENST00000252809|GDF15	MULTI-SECPEP	A375_MHC_IP_R2	2	450.69256591796875	2	450.292894	898.571235	-0.47159	-0.00021235	0.073852	3.3255E-05	-0.39774	-0.0001791	450.2928535256745	37.836	0.56455	38.611	38.432	38.997	0.77451					23	10	3	0	0	0	0.92636	1	13890	13890		7.2892	0	1	6048100	+		28213	18544	20080	20246	27680	27680					0.11789190125227833
LAASRQQLI	9	Unmodified	_LAASRQQLI_					0	0	0		ENST00000600997.5_1_19:18702792-18702987:+|nuORF	ENST00000600997.5_1_19:18702792-18702987:+|nuORF	ENST00000600997.5_1_19:18702792-18702987:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	500.7008361816406	2	500.300916	998.587279	-0.59044	-0.0002954	0.052405	2.6218E-05	-0.53804	-0.00026918	500.3010472603098	27.002	0.2993	27.002	26.828	27.128	0					8	5	2	0	0	0	0.58271	1	8158	8158		6.2058	0	1	5928000			28214	13869	20081	20247	27681	27681					0.08792851571479332
LAAVGSDTAEH	11	Unmodified	_LAAVGSDTAEH_					0	0	0		ENST00000536896.2_1_1:26145941-26146436:-|nuORF	ENST00000536896.2_1_1:26145941-26146436:-|nuORF	ENST00000536896.2_1_1:26145941-26146436:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	536.1573486328125	2	535.759278	1069.504	-0.85357	-0.00045731	-2.5282	-0.0013545	-3.3817	-0.0018118	535.7576861484863	130.36	0.20261	130.58	130.45	130.65	0.2142					5	3	2	0	0	0	0.95991	1	51278	51278		18.146	0	1	13481000			28215	13242	20082	20248	27682	27682					-0.02796929667056247
LAAVGSDTAEH	11	Unmodified	_LAAVGSDTAEH_					0	0	0		ENST00000536896.2_1_1:26145941-26146436:-|nuORF	ENST00000536896.2_1_1:26145941-26146436:-|nuORF	ENST00000536896.2_1_1:26145941-26146436:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	535.759278	1069.504	-0.92651	-0.00049639	-2.722	-0.0014583	-3.6485	-0.0019547	535.7574353245332	130.58	0.15311	130.58	130.46	130.62	0	0.0038488	-0.00012947	NaN	18.146	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11561000			28216	13242	20082	20248							-0.02796929667056247
LAAVRLDP	8	Unmodified	_LAAVRLDP_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MSMS	A375_MHC_IP_R2	2	427.666259765625	2	427.758352	853.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.505	1	40.279	39.779	40.779	0.77451								0	0	0	0.16876	1	14590	14590		15.768	0	1				28217	5059	20083	20249	27683	27683					0.06954106105649771
LAAVSPGAGVV	11	Unmodified	_LAAVSPGAGVV_					0	0	0			REV__ENST00000530897.1_1_11:1331005-1331308:+|nuORF	REV__ENST00000530897.1_1_11:1331005-1331308:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	471.1766052246094	2	470.776742	939.538931	-0.32788	-0.00015436	0.058535	2.7557E-05	-0.26935	-0.0001268	470.7767430589973	89.257	0.70966	89.257	88.919	89.628	0					31	13	3	0	0	0	0.093731	1	32767	32767		71.134	9.7761	1	3879500	+		28218	25844	20084	20250	27684	27684					0.06674357931581198
LAAVSPGAGVV	11	Unmodified	_LAAVSPGAGVV_					0	0	0			REV__ENST00000530897.1_1_11:1331005-1331308:+|nuORF	REV__ENST00000530897.1_1_11:1331005-1331308:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	470.776742	939.538931	-0.52679	-0.000248	0.06295	2.9635E-05	-0.46384	-0.00021837	470.77669717466586	88.421	0.91255	89.153	88.671	89.584	0.7318	-0.052133	2.3358E-06	NaN	71.134	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6735700	+		28219	25844	20084	20250							0.06674357931581198
LAAYSFVSGV	10	Unmodified	_LAAYSFVSGV_					0	0	0		ENST00000490746.5_1_2:75696479-75749569:-|nuORF	ENST00000490746.5_1_2:75696479-75749569:-|nuORF	ENST00000490746.5_1_2:75696479-75749569:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	507.6681213378906	2	507.26875	1012.52295	-0.46922	-0.00023802	-0.20468	-0.00010383	-0.6739	-0.00034185	507.2684399813652	91.529	0.80994	91.529	90.946	91.756	0					18	15	2	0	0	0	0.40101	1	33654	33654		34.102	7.2188	1	2058500			28220	12649	20085	20251	27685	27685					0.017186516946708252
LACCACCCW	9	Unmodified	_LACCACCCW_					0	0	0		ENST00000570902.1_1_17:1542098-1543756:-|nuORF;ENST00000576012.5_1_17:1538054-1543444:-|nuORF;nc|ENSG00000074660|Q14162-3|SCARF1;nc|ENSG00000074660|Q14162-2|SCARF1;ENSG00000074660|ENST00000263071|SCARF1	ENST00000570902.1_1_17:1542098-1543756:-|nuORF	ENST00000570902.1_1_17:1542098-1543756:-|nuORF	MSMS	A375_MHC_IP_R1	1	488.18707275390625	2	488.154322	974.294092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.583	1	69.583	69.083	70.083	0								0	0	0	0.15486	1	25253	25253		5.2307	2.6532	1				28221	1589	20086	20252	27686	27686					-0.1940836973291198
LACCACCCW	9	Unmodified	_LACCACCCW_					0	0	0		ENST00000570902.1_1_17:1542098-1543756:-|nuORF;ENST00000576012.5_1_17:1538054-1543444:-|nuORF;nc|ENSG00000074660|Q14162-3|SCARF1;nc|ENSG00000074660|Q14162-2|SCARF1;ENSG00000074660|ENST00000263071|SCARF1	ENST00000570902.1_1_17:1542098-1543756:-|nuORF	ENST00000570902.1_1_17:1542098-1543756:-|nuORF	MSMS	A375_MHC_IP_R2	2	488.18658447265625	2	488.154322	974.294092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.634	1	69.369	68.869	69.869	0.73511								0	0	0	0.15486	1	26007	26007		5.2307	0.90143	1				28222	1589	20086	20252	27687	27687					-0.1940836973291198
LACDKRYFGL	10	Unmodified	_LACDKRYFGL_					0	0	0			REV__MEGF10|p.G752R|1|0.82|ENSG00000145794|chr5:127440759-127440759|G/A|missense_variant	REV__MEGF10|p.G752R|1|0.82|ENSG00000145794|chr5:127440759-127440759|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	396.2740478515625	3	395.874348	1184.60121	-0.011867	-4.6978E-06	0.23269	9.2116E-05	0.22082	8.7419E-05	395.8742398116288	46.184	0.60503	46.184	45.89	46.495	0					22	11	3	0	0	0	0.83355	1	16195	16195		7.4771	0	1	2719700	+		28223	27007	20087	20253	27688	27688					0.016297610082574465
LACDRCHM	8	Unmodified	_LACDRCHM_					0	0	0			REV__ENSG00000117069|ENST00000477717|ST6GALNAC5	REV__ENSG00000117069|ENST00000477717|ST6GALNAC5	MSMS	A375_MHC_IP_R2	2	474.66876220703125	2	474.696057	947.377562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.248	1	65.986	65.486	66.486	0.73811								0	0	0	0.16876	1	24738	24738		2.8892	0	1		+		28224	17990	20088	20254	27689	27689					-0.09823173969186882
LACQATVSHV	10	Unmodified	_LACQATVSHV_					0	0	0			REV__ENSG00000143126|ENST00000271332|CELSR2	REV__ENSG00000143126|ENST00000271332|CELSR2	MULTI-MSMS	A375_MHC_IP_R1	1	515.1627197265625	2	514.763309	1027.51206	-0.37883	-0.00019501	-0.51715	-0.00026621	-0.89598	-0.00046122	514.7631086891406	110.75	0.45993	110.75	110.49	110.95	0					17	8	3	0	0	0	0.70496	1	40607	40607		10.074	10.074	1	2284300	+		28225	19335	20089	20255	27690	27690					-0.0005907395127451309
LACSDISVNI	10	Unmodified	_LACSDISVNI_					0	0	0		ENSG00000148136|ENST00000277216|OR13C4	ENSG00000148136|ENST00000277216|OR13C4	ENSG00000148136|ENST00000277216|OR13C4	MULTI-SECPEP	A375_MHC_IP_R2	2	517.6266479492188	2	517.762975	1033.5114	-0.8281	-0.00042876	0.35106	0.00018177	-0.47704	-0.00024699	518.2632913247943	33.011	0.30674	33.748	33.569	33.876	0.73692					6	5	2	0	0	0	0.88918	1	11834	11834		8.7454	0.58988	1	966930			28226	5715	20090	20256	27691	27691					-0.004019133909878292
LADDFSDF	8	Unmodified	_LADDFSDF_					0	0	0		USP9X|p.S1110F|1|0.41|ENSG00000124486|chrX:41184446-41184446|C/T|missense_variant	USP9X|p.S1110F|1|0.41|ENSG00000124486|chrX:41184446-41184446|C/T|missense_variant	USP9X|p.S1110F|1|0.41|ENSG00000124486|chrX:41184446-41184446|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	465.1494445800781	2	465.19799	928.381428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.723	1	79.468	78.968	79.968	0.74474								0	0	0	0.16876	1	29884	29884		10.183	0	1				28227	30133	20091	20257	27692	27692					-0.08562766398472377
LADDLYRYDV	10	Unmodified	_LADDLYRYDV_					0	0	0		nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN	nc|ENSG00000088812|O75882-3|ATRN	nc|ENSG00000088812|O75882-3|ATRN	MULTI-SECPEP	A375_MHC_IP_R1	1	621.2503662109375	2	621.803685	1241.59282	-0.71714	-0.00044592	-0.29461	-0.00018319	-1.0117	-0.00062911	621.8036595961145	41.171	0.50677	41.171	40.963	41.47	0					13	9	2	0	0	0	0.92832	1	14121	14121		19.257	11.648	1	1549600			28228	1897	20092	20258	27693	27693					-0.018315144273856276
LADDLYRYDV	10	Unmodified	_LADDLYRYDV_					0	0	0		nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN	nc|ENSG00000088812|O75882-3|ATRN	nc|ENSG00000088812|O75882-3|ATRN	MULTI-MATCH	A375_MHC_IP_R2	2		2	621.803685	1241.59282	-0.82562	-0.00051338	0.27274	0.00016959	-0.55288	-0.00034378	621.804297087201	40.464	0.50864	41.239	41.031	41.54	0.77451	0.033694	0.00034267	NaN	13.906	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1487100			28229	1897	20092	20258							-0.018315144273856276
LADFIRVID	9	Unmodified	_LADFIRVID_					0	0	0			REV__tr|U7SKY3|U7SKY3_FUSNUOxaloacetatedecarboxylase,alphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01990PE=4SV=1	REV__tr|U7SKY3|U7SKY3_FUSNUOxaloacetatedecarboxylase,alphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01990PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	354.9719543457031	3	354.537842	1060.5917	-0.46	-0.00016309	-3.6799	-0.0013046	-4.1399	-0.0014677	354.5365593212546	35.343	0.45465	36.107	35.878	36.333	0.76338					12	8	2	0	0	0	0.80713	1	12803	12803		2.086	0	1	495610	+		28230	28262	20093	20259	27694	27694					0.06382315994369492
LADFIRVID	9	Unmodified	_LADFIRVID_					0	0	0			REV__tr|U7SKY3|U7SKY3_FUSNUOxaloacetatedecarboxylase,alphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01990PE=4SV=1	REV__tr|U7SKY3|U7SKY3_FUSNUOxaloacetatedecarboxylase,alphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01990PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		3	354.537842	1060.5917	-0.23547	-8.3482E-05	-5.3069	-0.0018815	-5.5424	-0.001965	354.86959924058453	36.38	0.25345	36.38	36.287	36.541	0	0.13676	-0.0010274	NaN	2.086	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	423580	+		28231	28262	20093	20259							0.06382315994369492
LADIYRELY	9	Unmodified	_LADIYRELY_					0	0	0		ENSG00000162227|ENST00000294168|TAF6L	ENSG00000162227|ENST00000294168|TAF6L	ENSG00000162227|ENST00000294168|TAF6L	MULTI-SECPEP	A375_MHC_IP_R1	1	578.7054443359375	2	578.305864	1154.59717	-0.15214	-8.7985E-05	-2.0225	-0.0011696	-2.1746	-0.0012576	578.3054765938798	83.192	0.50613	83.192	82.874	83.38	0					30	9	4	0	0	0	0.41439	1	30384	30384		40.725	14.457	1	9509200			28232	6513	20094	20260	27695	27695					0.02605994786199517
LADKRQVSV	9	Unmodified	_LADKRQVSV_					0	0	0		ENSG00000222014|ENST00000410061|RAB6C	ENSG00000222014|ENST00000410061|RAB6C	ENSG00000222014|ENST00000410061|RAB6C	MULTI-MSMS	A375_MHC_IP_R1	1	508.6986083984375	2	508.298373	1014.58219	-0.23973	-0.00012185	0.16516	8.3949E-05	-0.074569	-3.7903E-05	508.29840399815623	128.11	0.60719	128.11	127.92	128.53	0					23	11	4	0	0	0	0.70886	1	49182	49182		6.2058	1.8765	1	8392400			28233	9682	20095	20261	27696	27696					0.07548547708859132
LADLHKREKEL	11	Unmodified	_LADLHKREKEL_					0	0	0		nc|ENSG00000163749|Q5M9N0|CCDC158;ENSG00000163749|ENST00000682701|CCDC158	nc|ENSG00000163749|Q5M9N0|CCDC158	nc|ENSG00000163749|Q5M9N0|CCDC158	MULTI-MSMS	A375_MHC_IP_R1	1	451.66070556640625	3	451.261259	1350.76195	-0.41773	-0.0001885	-0.82975	-0.00037443	-1.2475	-0.00056294	451.2609747640884	132.95	0.76653	132.95	132.54	133.3	0					22	14	2	0	0	0	0.73557	1	51289	51289		1.4551	0	1	4832600			28234	6714	20096	20262	27697	27697					0.10059806925983139
LADLPDRL	8	Unmodified	_LADLPDRL_					0	0	0			REV__ENSG00000187017|ENST00000645284|ESPN	REV__ENSG00000187017|ENST00000645284|ESPN	MULTI-MSMS	A375_MHC_IP_R1	1	457.28955078125	2	456.761092	911.507631	-0.092278	-4.2149E-05	0.074371	3.397E-05	-0.017908	-8.1795E-06	456.76102004284456	71.338	0.51033	71.338	71.005	71.516	0					13	9	2	0	0	0	0.7338	1	25937	25937		24.674	1.5255	1	2525200	+		28235	22004	20097	20263	27698	27698					0.04833784897471105
LADLPDRL	8	Unmodified	_LADLPDRL_					0	0	0			REV__ENSG00000187017|ENST00000645284|ESPN	REV__ENSG00000187017|ENST00000645284|ESPN	MULTI-MSMS	A375_MHC_IP_R2	2	457.2890319824219	2	456.761092	911.507631	-0.23214	-0.00010603	-0.040406	-1.8456E-05	-0.27254	-0.00012449	456.7609861128258	70.491	0.50672	71.225	70.946	71.453	0.73421					16	9	2	0	0	0	0.7338	1	26789	26789		24.674	3.8027	1	4186000	+		28236	22004	20097	20263	27699	27699					0.04833784897471105
LADPASLSV	9	Unmodified	_LADPASLSV_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-MSMS	A375_MHC_IP_R1	1	437.139892578125	2	436.739825	871.465098	-0.33714	-0.00014724	-0.10243	-4.4733E-05	-0.43957	-0.00019198	436.7397843409328	84.334	0.91376	84.334	83.887	84.8	0					34	17	3	0	0	0	0.03063	1	30846	30846		74.423	0	1	4993800	+		28237	19022	20098	20264	27700	27700					0.024223897692309038
LADPASLSV	9	Unmodified	_LADPASLSV_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-SECPEP	A375_MHC_IP_R1	1	436.2911682128906	2	436.739825	871.465098	-0.33714	-0.00014724	-0.10243	-4.4733E-05	-0.43957	-0.00019198	436.7397843409328	84.334	0.91376	84.334	83.887	84.8	0					34	17	3	0	0	0	0.24479	1	30808	30808		34.102	0	1	4993800	+		28238	19022	20098	20264	27701	27701					0.024223897692309038
LADPASLSV	9	Unmodified	_LADPASLSV_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-SECPEP	A375_MHC_IP_R1	1	872.3472900390625	1	872.472374	871.465098	-0.47294	-0.00041263	-0.14187	-0.00012378	-0.61481	-0.0005364	872.4721843680699	84.33	0.70824	84.33	83.989	84.697	0					34	13	3	0	0	0	0.037185	1	30829	30829		85.272	0	1	27713000	+		28239	19022	20098	20264	27702	27702					0.024223897692309038
LADPASLSV	9	Unmodified	_LADPASLSV_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-MSMS	A375_MHC_IP_R2	2	873.192626953125	1	872.472374	871.465098	-0.51693	-0.00045101	-0.4745	-0.00041399	-0.99143	-0.000865	872.4718686034892	83.592	0.6638	84.331	83.947	84.611	0.73962					31	12	3	0	0	0	0.030038	1	31778	31778		74.929	0	1	27315000	+		28240	19022	20098	20264	27703	27703					0.024223897692309038
LADPASLSV	9	Unmodified	_LADPASLSV_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-SECPEP	A375_MHC_IP_R2	2	872.34814453125	1	872.472374	871.465098	-0.51693	-0.00045101	-0.4745	-0.00041399	-0.99143	-0.000865	872.4718686034892	83.592	0.6638	84.331	83.947	84.611	0.73962					31	12	3	0	0	0	0.037185	1	31760	31760		85.272	0	1	27315000	+		28241	19022	20098	20264	27704	27704					0.024223897692309038
LADQTNIEYG	10	Unmodified	_LADQTNIEYG_					0	0	0		ENST00000454993.6_1_19:42503025-42546997:-|nuORF;ENSG00000105737|ENST00000593562|GRIK5;nc|ENSG00000105737|Q16478-2|GRIK5;GRIK5|p.D657N|1|0.24|ENSG00000105737|chr19:42006713-42006713|C/T|missense_variant	ENST00000454993.6_1_19:42503025-42546997:-|nuORF	ENST00000454993.6_1_19:42503025-42546997:-|nuORF	MSMS	A375_MHC_IP_R1	1	562.1875610351562	2	562.266936	1122.51932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.364	1	67.364	66.864	67.864	0								0	0	0	0.14483	1	24410	24410		27.629	4.4804	1				28242	2634	20099	20265	27705	27705					-0.037040628698832734
LADRSEPE	8	Unmodified	_LADRSEPE_					0	0	0			REV__ENSG00000177853|ENST00000316045|ZNF518A	REV__ENSG00000177853|ENST00000316045|ZNF518A	MSMS	A375_MHC_IP_R2	2	458.6192626953125	2	458.722164	915.429775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.453	1	36.217	35.717	36.717	0.76338								0	0	0	0.16876	1	12855	12855		9.3474	0.75416	1		+		28243	21473	20100	20266	27706	27706					-0.03132272758568888
LADSLVPMEI	10	Unmodified	_LADSLVPMEI_					0	0	0		nc|ENSG00000104299|Q9NV88-3|INTS9;ENSG00000104299|ENST00000521022|INTS9;nc|ENSG00000104299|Q9NV88-2|INTS9;ENST00000523303.5_1_8:28625665-28628621:-|nuORF;ENST00000520316.5_1_8:28627126-28633440:-|nuORF	nc|ENSG00000104299|Q9NV88-3|INTS9	nc|ENSG00000104299|Q9NV88-3|INTS9	MULTI-SECPEP	A375_MHC_IP_R1	1	543.6443481445312	2	544.288825	1086.5631	-0.53076	-0.00028888	-0.74506	-0.00040553	-1.2758	-0.00069442	544.2880636537452	81.639	1.013	81.639	81.1	82.113	0					35	19	3	0	0	0	0.76414	1	29794	29794		14.838	14.838	1	2189100			28244	2494	20101	20267	27707	27707					0.023278303029201197
LADSVSFHAM	10	Unmodified	_LADSVSFHAM_					0	0	0			REV__ENSG00000101191|ENST00000395343|DIDO1	REV__ENSG00000101191|ENST00000395343|DIDO1	MULTI-SECPEP	A375_MHC_IP_R2	2	360.2389831542969	3	359.839303	1076.49608	-0.44706	-0.00016087	2.4554	0.00088354	2.0083	0.00072267	359.8392358582462	38.922	0.71645	39.696	39.401	40.118	0.77451					38	13	4	0	0	0	0.85226	1	14340	14340		12.873	0	1	10302000	+		28245	17148	20102	20268	27708	27708					-0.03910780188175522
LADTCENHE	9	Unmodified	_LADTCENHE_					0	0	0			REV__nc|ENSG00000274349|Q5TYW1-2|ZNF658	REV__nc|ENSG00000274349|Q5TYW1-2|ZNF658	MSMS	A375_MHC_IP_R1	1	516.1818237304688	2	516.208563	1030.40257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.582	1	98.582	98.082	99.082	0								0	0	0	0.15486	1	36220	36220		7.9102	2.1497	1		+		28246	22956	20103	20269	27709	27709					-0.11141124361256516
LADTLAGLSV	10	Unmodified	_LADTLAGLSV_					0	0	0		ENSG00000124574|ENST00000372530|ABCC10;nc|ENSG00000124574|Q5T3U5-2|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	MULTI-MSMS	A375_MHC_IP_R2	2	480.6738586425781	2	480.274032	958.533512	-0.55654	-0.00026729	0.27854	0.00013378	-0.27799	-0.00013351	480.2738818676004	98.262	0.55833	99.021	98.793	99.352	0.75977					22	10	3	0	0	0	0.33603	1	37285	37285		37.974	3.8716	1	3233200			28247	3916	20104	20270	27710	27710					0.05258634349104341
LADVPDSVV	9	Unmodified	_LADVPDSVV_					0	0	0		nc|ENSG00000167080|Q8NHY0-3|B4GALNT2;ENSG00000167080|ENST00000393354|B4GALNT2;nc|ENSG00000167080|Q8NHY0|B4GALNT2	nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	MULTI-SECPEP	A375_MHC_IP_R1	1	457.28955078125	2	457.745108	913.475663	-0.064289	-2.9428E-05	-0.035934	-1.6449E-05	-0.10022	-4.5876E-05	457.7448853631264	71.518	0.35287	71.518	71.262	71.615	0					9	6	2	0	0	0	0.3607	1	25937	25937		34.102	12.356	1	1118100			28248	7151	20105	20271	27711	27711					0.015463724236724374
LADVRLNY	8	Unmodified	_LADVRLNY_					0	0	0		ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	MULTI-SECPEP	A375_MHC_IP_R1	1	482.7026062011719	2	482.266542	962.51853	-0.36219	-0.00017467	0.53938	0.00026013	0.17719	8.5455E-05	482.2667696660182	59.305	0.30471	59.305	59.143	59.448	0					8	5	2	0	0	0	0.972	1	21276	21276		4.756	2.9118	1	716610			28249	2372	20106	20272	27712	27712					0.03577187271753246
LADWPLWY	8	Unmodified	_LADWPLWY_					0	0	0		nc|ENSG00000107789|Q9UNW1-3|MINPP1;nc|ENSG00000107789|Q9UNW1-2|MINPP1;ENSG00000107789|ENST00000371996|MINPP1	nc|ENSG00000107789|Q9UNW1-3|MINPP1	nc|ENSG00000107789|Q9UNW1-3|MINPP1	MULTI-SECPEP	A375_MHC_IP_R2	2	532.6669311523438	2	532.26601	1062.51747	-1.2293	-0.00065433	1.953	0.0010395	0.72368	0.00038519	532.2673629375657	33.728	0.50597	34.481	34.247	34.753	0.75225					21	9	3	0	0	0	0.90224	1	12166	12166		13.508	13.508	1	2178400			28250	2758	20107	20273	27713	27713					-0.01129027097135804
LADWPLWY	8	Unmodified	_LADWPLWY_					0	0	0		nc|ENSG00000107789|Q9UNW1-3|MINPP1;nc|ENSG00000107789|Q9UNW1-2|MINPP1;ENSG00000107789|ENST00000371996|MINPP1	nc|ENSG00000107789|Q9UNW1-3|MINPP1	nc|ENSG00000107789|Q9UNW1-3|MINPP1	MULTI-MATCH	A375_MHC_IP_R1	1		2	532.26601	1062.51747	-0.6796	-0.00036173	1.9641	0.0010454	1.2845	0.00068369	532.2671361216844	34.482	0.50606	34.482	34.253	34.759	0	0.00064074	3.4539E-06	NaN	13.508	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2761800			28251	2758	20107	20273							-0.01129027097135804
LADYLAREY	9	Unmodified	_LADYLAREY_					0	0	0		tr|U7SYW7|U7SYW7_FUSNURibonucleoside-diphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00841PE=3SV=1	tr|U7SYW7|U7SYW7_FUSNURibonucleoside-diphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00841PE=3SV=1	tr|U7SYW7|U7SYW7_FUSNURibonucleoside-diphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00841PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	558.1796875	2	557.282389	1112.55022	-0.53553	-0.00029844	-2.3629	-0.0013168	-2.8984	-0.0016152	557.2822552787158	63.888	1.3737	63.888	63.377	64.75	0					64	26	4	0	0	0	0.58047	1	23230	23230		15.847	1.0089	1	10797000			28252	29847	20108	20274	27714	27714					-0.0015486476497699186
LADYYFCL	8	Unmodified	_LADYYFCL_					0	0	0			REV__IGSF1|p.S302L|1|0.52|ENSG00000147255|chrX:131283027-131283027|G/A|missense_variant	REV__IGSF1|p.S302L|1|0.52|ENSG00000147255|chrX:131283027-131283027|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	504.1717529296875	2	504.230779	1006.447	-0.23637	-0.00011918	-0.93071	-0.00046929	-1.1671	-0.00058848	504.7320047837072	110.82	0.20478	110.82	110.65	110.85	0					5	3	2	0	0	0	0.77686	1	40584	40584		6.3541	0	1	545700	+		28253	26782	20109	20275	27715	27715					-0.055960684771207525
LAEAPHWSWSM	11	Unmodified	_LAEAPHWSWSM_					0	0	0		ENST00000368872.5_2_1:151288686-151288770:-|nuORF	ENST00000368872.5_2_1:151288686-151288770:-|nuORF	ENST00000368872.5_2_1:151288686-151288770:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	439.2688903808594	3	438.869374	1313.58629	-0.33376	-0.00014648	-0.74891	-0.00032867	-1.0827	-0.00047515	438.869104574746	24.168	0.45589	24.168	24.042	24.498	0					13	8	3	0	0	0	0.72515	1	6827	6827		13.519	6.4816	1	13634000			28254	11124	20110	20276	27716	27716					-0.057957308597679
LAEAPHWSWSM	11	Unmodified	_LAEAPHWSWSM_					0	0	0		ENST00000368872.5_2_1:151288686-151288770:-|nuORF	ENST00000368872.5_2_1:151288686-151288770:-|nuORF	ENST00000368872.5_2_1:151288686-151288770:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	439.26898193359375	3	438.869374	1313.58629	-0.60385	-0.00026501	-0.68263	-0.00029959	-1.2865	-0.0005646	438.86912307308125	23.519	0.35381	24.149	23.979	24.333	0.63014					14	6	3	0	0	0	0.72515	1	7598	7598		13.519	6.4816	1	8929400			28255	11124	20110	20276	27717	27717					-0.057957308597679
LAEAPHWSWSM	11	Unmodified	_LAEAPHWSWSM_					0	0	0		ENST00000368872.5_2_1:151288686-151288770:-|nuORF	ENST00000368872.5_2_1:151288686-151288770:-|nuORF	ENST00000368872.5_2_1:151288686-151288770:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	438.869374	1313.58629	-0.33376	-0.00014648	-0.74891	-0.00032867	-1.0827	-0.00047515	438.869104574746	24.168	0.45589	24.168	24.042	24.498	0	0.0095091	-4.7505E-05	NaN	13.519	13	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13634000			28256	11124	20110	20276							-0.057957308597679
LAEAPHWSWSM	11	Unmodified	_LAEAPHWSWSM_					0	0	0		ENST00000368872.5_2_1:151288686-151288770:-|nuORF	ENST00000368872.5_2_1:151288686-151288770:-|nuORF	ENST00000368872.5_2_1:151288686-151288770:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	438.869374	1313.58629	-0.60385	-0.00026501	-0.68263	-0.00029959	-1.2865	-0.0005646	438.86912307308125	23.519	0.35381	24.149	23.979	24.333	0.63014	-0.0095091	3.9761E-05	NaN	13.519	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8929400			28257	11124	20110	20276							-0.057957308597679
LAEDDDED	8	Unmodified	_LAEDDDED_					0	0	0			REV__ENSG00000189431|ENST00000529419|RASSF10	REV__ENSG00000189431|ENST00000529419|RASSF10	MSMS	A375_MHC_IP_R1	1	461.15679931640625	2	461.169627	920.324701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.235	1	98.235	97.735	98.735	0								0	0	0	0.16876	1	36093	36093		2.8892	0	1		+		28258	22153	20111	20277	27718	27718					-0.13864858745660058
LAEDDDED	8	Unmodified	_LAEDDDED_					0	0	0			REV__ENSG00000189431|ENST00000529419|RASSF10	REV__ENSG00000189431|ENST00000529419|RASSF10	MSMS	A375_MHC_IP_R2	2	461.15643310546875	2	461.169627	920.324701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.409	1	98.165	97.665	98.665	0.75586								0	0	0	0.16876	1	36972	36972		2.8892	0	1		+		28259	22153	20111	20277	27719	27719					-0.13864858745660058
LAEDLVQRQ	9	Unmodified	_LAEDLVQRQ_					0	0	0			REV__ENST00000464783.1_1_3:9879702-9882102:-|nuORF	REV__ENST00000464783.1_1_3:9879702-9882102:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1669311523438	2	536.293288	1070.57202	-0.75484	-0.00040481	0.032771	1.7575E-05	-0.72207	-0.00038724	536.2931772688777	59.026	0.50928	59.026	58.786	59.295	0					15	9	2	0	0	0	0.65527	1	21190	21190		22.736	2.3217	1	3041600	+		28260	20005	20112	20278	27720	27720					0.039559399836207376
LAEEFDISLA	10	Unmodified	_LAEEFDISLA_					0	0	0			REV__ENSG00000138152|ENST00000260723|BTBD16	REV__ENSG00000138152|ENST00000260723|BTBD16	MULTI-SECPEP	A375_MHC_IP_R1	1	554.6509399414062	2	554.282054	1106.54956	-0.89158	-0.00049419	0.47	0.00026051	-0.42159	-0.00023368	554.2825890365452	139.39	0.71123	139.39	139.12	139.83	0					21	13	2	0	0	0	0.93615	1	53569	53569		7.2892	0	1	727290	+		28261	19070	20113	20279	27721	27721					0.0005429579534848017
LAEEFDISLA	10	Unmodified	_LAEEFDISLA_					0	0	0			REV__ENSG00000138152|ENST00000260723|BTBD16	REV__ENSG00000138152|ENST00000260723|BTBD16	MULTI-MATCH	A375_MHC_IP_R2	2		2	554.282054	1106.54956	-0.58562	-0.0003246	-0.37497	-0.00020784	-0.96058	-0.00053243	554.2818619772356	139.63	0.30208	139.69	139.55	139.85	0.059906	0.14768	-0.00058478	NaN	7.2892	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	545570	+		28262	19070	20113	20279							0.0005429579534848017
LAEEFSPDW	9	Unmodified	_LAEEFSPDW_					0	0	0			REV__ENSG00000073050|ENST00000262887|XRCC1	REV__ENSG00000073050|ENST00000262887|XRCC1	MULTI-SECPEP	A375_MHC_IP_R2	2	547.6455688476562	2	547.245472	1092.47639	-0.83797	-0.00045857	-0.13266	-7.2599E-05	-0.97063	-0.00053117	547.2454306064074	70.693	1.0122	71.427	71.099	72.111	0.73421					34	19	2	0	0	0	0.69504	1	26774	26774		7.9102	0	1	9592400	+		28263	16615	20114	20280	27722	27722					-0.06614832927266434
LAEELAKNL	9	Unmodified	_LAEELAKNL_					0	0	0			REV__nc|ENSG00000145901|Q15025-7|TNIP1	REV__nc|ENSG00000145901|Q15025-7|TNIP1	MSMS	A375_MHC_IP_R2	2	500.6846008300781	2	500.787307	999.560061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.348	1	63.091	62.591	63.591	0.74263								0	0	0	0.107	1	23633	23633		39.957	0	1		+		28264	19501	20115	20281	27723	27723					0.060263232404167866
LAEELDTYF	9	Unmodified	_LAEELDTYF_					0	0	0			REV__ENSG00000169989|ENST00000304337|TIGD4	REV__ENSG00000169989|ENST00000304337|TIGD4	MULTI-SECPEP	A375_MHC_IP_R2	2	551.4884033203125	2	550.760955	1099.50736	-0.6901	-0.00038008	-2.6507	-0.0014599	-3.3408	-0.00184	551.2609257003949	87.617	0.45462	88.349	88.116	88.57	0.7318					10	8	2	0	0	0	0.75466	1	33275	33275		12.532	6.7711	1	2408400	+		28265	20959	20116	20282	27724	27724					-0.038416796130377406
LAEEQTEF	8	Unmodified	_LAEEQTEF_					0	0	0		ENSG00000169933|ENST00000675598|FRMPD4;nc|ENSG00000169933|Q14CM0|FRMPD4	ENSG00000169933|ENST00000675598|FRMPD4	ENSG00000169933|ENST00000675598|FRMPD4	MSMS	A375_MHC_IP_R2	2	483.6994934082031	2	483.724372	965.434192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.13	1	83.869	83.369	84.369	0.73962								0	0	0	0.16876	1	31594	31594		9.3474	0.75416	1				28266	7454	20117	20283	27725	27725					-0.049908083356626776
LAEERQALK	9	Unmodified	_LAEERQALK_					0	0	0			REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA	REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA	MULTI-SECPEP	A375_MHC_IP_R1	1	529.1404418945312	2	529.303655	1056.59276	-0.63983	-0.00033866	0.27979	0.00014809	-0.36004	-0.00019057	529.8052378994079	24.696	0.15169	24.696	24.597	24.749	0					4	2	2	0	0	0	0.74412	1	7059	7059		10.074	0	1	1830700	+		28267	17776	20118	20284	27726	27726					0.0667253036326656
LAEGDDRCV	9	Unmodified	_LAEGDDRCV_					0	0	0			REV__ENST00000464255.1_1_2:219265892-219269145:+|nuORF	REV__ENST00000464255.1_1_2:219265892-219269145:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	489.6204528808594	2	489.221474	976.428395	-0.10918	-5.3413E-05	-0.68042	-0.00033288	-0.7896	-0.00038629	489.2211100889009	93.048	0.40776	93.048	92.922	93.329	0					10	7	2	0	0	0	0.77244	1	34276	34276		9.3474	4.5914	1	1092200	+		28268	25010	20119	20285	27727	27727					-0.06076230118969761
LAEKNNEW	8	Unmodified	_LAEKNNEW_					0	0	0			REV__ENSG00000106624|ENST00000223357|AEBP1	REV__ENSG00000106624|ENST00000223357|AEBP1	MULTI-MSMS	A375_MHC_IP_R2	2	502.1949768066406	2	502.245806	1002.47706	-0.51642	-0.00025937	0.54251	0.00027247	0.026096	1.3106E-05	502.24611665520996	68.916	0.76035	69.651	69.171	69.932	0.73511					19	14	2	0	0	0	0.7758	1	25972	25972		10.183	0.80027	1	1197200	+		28269	17457	20120	20286	27728	27728					-0.02407993487577187
LAEKNNEW	8	Unmodified	_LAEKNNEW_					0	0	0			REV__ENSG00000106624|ENST00000223357|AEBP1	REV__ENSG00000106624|ENST00000223357|AEBP1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	502.245806	1002.47706	-0.51642	-0.00025937	0.54251	0.00027247	0.026096	1.3106E-05	502.24611665520996	68.916	0.76035	69.651	69.171	69.932	0.73511	-0.085577	-2.9168E-05	NaN	10.183	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1197200	+		28270	17457	20120	20286							-0.02407993487577187
LAELHLAEL	9	Unmodified	_LAELHLAEL_					0	0	0			REV__ENSG00000174839|ENST00000311128|DENND6A	REV__ENSG00000174839|ENST00000311128|DENND6A	MULTI-SECPEP	A375_MHC_IP_R1	1	505.1831359863281	2	504.78985	1007.56515	-0.12734	-6.4281E-05	-0.086971	-4.3902E-05	-0.21431	-0.00010818	504.7897042140862	108.62	2.6938	108.62	108.05	110.75	0					82	52	3	0	0	0	0.10969	1	39804	39804		67.344	0	1	3008600	+		28271	21307	20121	20287	27729	27729					0.06166627103038991
LAELHLAEL	9	Unmodified	_LAELHLAEL_					0	0	0			REV__ENSG00000174839|ENST00000311128|DENND6A	REV__ENSG00000174839|ENST00000311128|DENND6A	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1715087890625	2	504.78985	1007.56515	-0.55705	-0.00028119	0.20741	0.0001047	-0.34964	-0.00017649	504.78962419410595	109.87	0.20454	110.61	110.43	110.64	0.74684					5	3	2	0	0	0	0.65246	1	41436	41436		21.747	0	1	355600	+		28272	21307	20121	20287	27730	27730					0.06166627103038991
LAELRDPQHY	10	Unmodified	_LAELRDPQHY_					0	0	0		ENST00000433274.6_1_11:64536502-64536589:-|nuORF	ENST00000433274.6_1_11:64536502-64536589:-|nuORF	ENST00000433274.6_1_11:64536502-64536589:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	621.2135009765625	2	621.317294	1240.62004	-1.431	-0.00088911	-1.5651	-0.0009724	-2.9961	-0.0018615	621.316522266152	29.477	0.30353	30.176	30.032	30.335	0.69872					8	5	2	0	0	0	0.71466	1	10339	10339		5.7319	0	1	1484600			28273	11890	20122	20288	27731	27731					0.009350139036541805
LAEMHPWY	8	Unmodified	_LAEMHPWY_					0	0	0			REV__ENST00000369825.5_1_10:105152006-105152039:-|nuORF	REV__ENST00000369825.5_1_10:105152006-105152039:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	524.1095581054688	2	523.741845	1045.46914	-0.38305	-0.00020062	0.032335	1.6935E-05	-0.35072	-0.00018369	523.7416675843243	88.537	0.66307	88.537	88.256	88.919	0					35	12	4	0	0	0	0.88799	1	32469	32469		28.173	28.173	1	9457400	+		28274	24021	20123	20289	27732	27732					-0.051778440086991395
LAEMHPWY	8	Unmodified	_LAEMHPWY_					0	0	0			REV__ENST00000369825.5_1_10:105152006-105152039:-|nuORF	REV__ENST00000369825.5_1_10:105152006-105152039:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	523.741845	1045.46914	-0.46284	-0.00024241	0.20707	0.00010845	-0.25577	-0.00013396	523.7419602778128	87.864	0.80956	88.596	88.217	89.026	0.7318	0.029245	0.00011961	NaN	28.173	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10365000	+		28275	24021	20123	20289							-0.051778440086991395
LAEMPPFLDT	10	Unmodified	_LAEMPPFLDT_					0	0	0		PIK3R6|p.S508F|1|0.33|ENSG00000276231|chr17:8823490-8823490|G/A|missense_variant	PIK3R6|p.S508F|1|0.33|ENSG00000276231|chr17:8823490-8823490|G/A|missense_variant	PIK3R6|p.S508F|1|0.33|ENSG00000276231|chr17:8823490-8823490|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	1135.67431640625	1	1133.55472	1132.54745	-0.17758	-0.0002013	-1.1154	-0.0012644	-1.293	-0.0014657	1133.5533074028792	131.05	0.81027	131.05	130.87	131.68	0					34	15	3	0	0	0	0.62155	1	50462	50462		19.257	5.3509	1	148310000			28276	15178	20124	20290	27733	27733					-0.013524562141356
LAENISRV	8	Unmodified	_LAENISRV_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENSG00000068976|ENST00000164139|PYGM;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	A375_MHC_IP_R1	1	451.6585693359375	2	451.258717	900.50288	-0.10702	-4.8293E-05	-1.2531	-0.00056547	-1.3601	-0.00061377	451.25854025706576	33.622	0.6581	33.622	33.393	34.052	0					24	12	3	0	0	0	0.55971	1	11052	11052		60.074	10.141	1	3979100			28277	2241;2187	20125	20291	27734	27734					0.048649007547169276
LAENISRV	8	Unmodified	_LAENISRV_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENSG00000068976|ENST00000164139|PYGM;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	A375_MHC_IP_R2	2	451.6586608886719	2	451.258717	900.50288	-0.36744	-0.00016581	-1.3222	-0.00059665	-1.6896	-0.00076245	451.25845292021506	32.904	0.76235	33.641	33.265	34.028	0.73692					21	14	2	0	0	0	0.42778	1	11785	11785		60.074	14.053	1	4841000			28278	2241;2187	20125	20291	27735	27735					0.048649007547169276
LAEPVYWSSH	10	Unmodified	_LAEPVYWSSH_					0	0	0			REV__STIM1|p.A343V|1|0.34|ENSG00000167323|chr11:4082242-4082242|C/T|missense_variant	REV__STIM1|p.A343V|1|0.34|ENSG00000167323|chr11:4082242-4082242|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	594.184814453125	2	594.787838	1187.56112	-0.75328	-0.00044804	0.44968	0.00026747	-0.30359	-0.00018057	594.7881398830937	67.669	1.1676	67.669	67.194	68.361	0					45	22	3	0	0	0	0.72086	1	24627	24627		30.637	11.38	1	12470000	+		28279	28058	20126	20292	27736	27736					-0.02515462390670109
LAERLNLSV	9	Unmodified	_LAERLNLSV_					0	0	0			REV__ENSG00000134962|ENST00000257408|KLB	REV__ENSG00000134962|ENST00000257408|KLB	MULTI-SECPEP	A375_MHC_IP_R2	2	508.1839294433594	2	507.800749	1013.58694	-0.63551	-0.00032271	-2.4218	-0.0012298	-3.0573	-0.0015525	508.3016595274241	79.37	0.60616	80.115	79.693	80.299	0.74473					15	11	2	0	0	0	0.52144	1	30185	30185		7.2892	0	1	2611200	+		28280	18814	20127	20293	27737	27737					0.08069431851617992
LAERPEQV	8	Unmodified	_LAERPEQV_					0	0	0		tr|U7T5V6|U7T5V6_FUSNULambdafamilyphageportalproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00099PE=4SV=1	tr|U7T5V6|U7T5V6_FUSNULambdafamilyphageportalproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00099PE=4SV=1	tr|U7T5V6|U7T5V6_FUSNULambdafamilyphageportalproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00099PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	471.6687316894531	2	471.256174	940.497795	-0.38212	-0.00018007	0.11679	5.5038E-05	-0.26532	-0.00012504	471.25635605808196	60.031	0.15345	60.031	59.955	60.109	0					4	2	2	0	0	0	0.90775	1	21597	21597		20.454	4.6064	1	178600			28281	30031	20128	20294	27738	27738					0.025165968920987325
LAESLVLCR	9	Unmodified	_LAESLVLCR_					0	0	0		nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;ENST00000538453.5_1_16:57103718-57116437:+|nuORF;ENST00000545081.5_1_16:57093337-57116437:+|nuORF	nc|ENSG00000140853|Q86WI3-4|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-MSMS	A375_MHC_IP_R2	2	503.2140197753906	2	502.283877	1002.5532	-0.59091	-0.00029681	-0.13137	-6.5984E-05	-0.72228	-0.00036279	502.2840904618878	132.29	0.46245	132.48	132.35	132.82	0.18953					19	8	5	0	0	0	0.25276	1	52058	52058		34.102	5.6156	1	12184000			28282	5190	20129	20295	27739	27739					0.0520268708819458
LAETRHRGNNE	11	Unmodified	_LAETRHRGNNE_					0	0	0		ENSG00000138347|ENST00000358913|MYPN	ENSG00000138347|ENST00000358913|MYPN	ENSG00000138347|ENST00000358913|MYPN	MSMS	A375_MHC_IP_R2	2	433.2852478027344	3	432.884963	1295.63306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.154	1	86.887	86.387	87.387	0.733								0	0	0	0.16269	1	32762	32762		4.7159	1.8726	1				28283	4981	20130	20296	27740	27740					-0.0029315498420601216
LAEVGLRL	8	Unmodified	_LAEVGLRL_					0	0	0		nc|ENSG00000291109|Q9UKY3-2|CES1P1;ENST00000563005.5_1_16:55854223-55866983:-|nuORF;nc|ENSG00000291109|Q9UKY3|CES1P1	nc|ENSG00000291109|Q9UKY3-2|CES1P1	nc|ENSG00000291109|Q9UKY3-2|CES1P1	MULTI-SECPEP	A375_MHC_IP_R1	1	435.2822570800781	2	435.774003	869.533452	-0.33329	-0.00014524	0.18919	8.2442E-05	-0.14411	-6.2799E-05	435.77415212567354	66.284	0.35468	66.284	65.972	66.326	0					11	6	2	0	0	0	0.90775	1	23985	23985		20.454	0	1	941210			28284	13520	20131	20297	27741	27741					0.09346679139753178
LAEVGVKEV	9	Unmodified	_LAEVGVKEV_					0	0	0		nc|ENSG00000148357|Q8NDA2-4|HMCN2;nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-SECPEP	A375_MHC_IP_R2	2	472.6758728027344	2	472.276575	942.538597	-1.0636	-0.00050232	0.24091	0.00011378	-0.82271	-0.00038855	472.2766834995258	52.711	0.35468	53.462	53.284	53.638	0.75105					11	6	2	0	0	0	0.13064	1	19902	19902		47.749	0	1	2567500			28285	14668	20132	20298	27742	27742					0.06502938211713172
LAEVLTQAL	9	Unmodified	_LAEVLTQAL_					0	0	0			REV__nc|ENSG00000187243|Q96JG8-4|MAGED4	REV__nc|ENSG00000187243|Q96JG8-4|MAGED4	MSMS	A375_MHC_IP_R1	1	479.1797790527344	2	479.2844	956.554247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.454	1	64.454	63.954	64.954	0								0	0	0	0.15283	1	23319	23319		16.942	1.0951	1		+		28286	27426	20133	20299	27743	27743					0.0742322472875685
LAFAALYYR	9	Unmodified	_LAFAALYYR_					0	0	0		nc|ENSG00000196338|Q9NZ94-3|NLGN3;nc|ENSG00000196338|Q9NZ94-2|NLGN3;ENSG00000196338|ENST00000358741|NLGN3	nc|ENSG00000196338|Q9NZ94-3|NLGN3	nc|ENSG00000196338|Q9NZ94-3|NLGN3	MULTI-SECPEP	A375_MHC_IP_R2	2	544.7103881835938	2	544.300384	1086.58622	-0.72126	-0.00039258	1.2022	0.00065436	0.48095	0.00026178	544.3010371313175	91.668	0.45896	92.402	92.122	92.581	0.7345					12	8	2	0	0	0	0.48581	1	34792	34792		18.135	18.135	1	1920200			28287	9027	20134	20300	27744	27744					0.046386372025381206
LAFAKHAETI	10	Unmodified	_LAFAKHAETI_					0	0	0			REV__GNPDA2|p.G205E|1|0.34|ENSG00000163281|chr4:44707907-44707907|C/T|missense_variant	REV__GNPDA2|p.G205E|1|0.34|ENSG00000163281|chr4:44707907-44707907|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2183837890625	2	550.808574	1099.60259	-0.54016	-0.00029752	-0.49725	-0.00027389	-1.0374	-0.00057141	550.8085016587762	75.446	0.25176	75.446	75.262	75.514	0					6	4	2	0	0	0	0.78945	1	27435	27435		19.257	19.257	1	1069800	+		28288	26690	20135	20301	27745	27745					0.05677718368656315
LAFASPPPP	9	Unmodified	_LAFASPPPP_					0	0	0			REV__ENST00000527426.1_1_11:47405038-47417061:-|nuORF	REV__ENST00000527426.1_1_11:47405038-47417061:-|nuORF	MSMS	A375_MHC_IP_R1	1	448.6954040527344	2	448.747453	895.480354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.648	1	39.648	39.148	40.148	0								0	0	0	0.12568	1	13570	13570		34.102	5.6156	1		+		28289	25788	20136	20302	27746	27746					0.028433013570861476
LAFASPPPP	9	Unmodified	_LAFASPPPP_					0	0	0			REV__ENST00000527426.1_1_11:47405038-47417061:-|nuORF	REV__ENST00000527426.1_1_11:47405038-47417061:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	449.13641357421875	2	448.747453	895.480354	-0.032788	-1.4714E-05	-0.51284	-0.00023014	-0.54563	-0.00024485	448.7471779182936	40.786	0.65811	40.786	40.355	41.013	0					14	12	2	0	0	0	0.62767	1	14124	14124		11.64	2.2929	1	606700	+		28290	25788	20136	20302	27747	27747					0.028433013570861476
LAFEHYINYQ	10	Unmodified	_LAFEHYINYQ_					0	0	0		THRB|p.R410Q|1|0.41|ENSG00000151090|chr3:24123041-24123041|C/T|missense_variant	THRB|p.R410Q|1|0.41|ENSG00000151090|chr3:24123041-24123041|C/T|missense_variant	THRB|p.R410Q|1|0.41|ENSG00000151090|chr3:24123041-24123041|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	433.28497314453125	3	433.211906	1296.61389	-0.36874	-0.00015974	0.11769	5.0985E-05	-0.25105	-0.00010876	433.2105852530428	55.175	0.86476	55.926	55.523	56.388	0.75075					37	16	4	0	0	0	0.94447	1	20689	20689		2.8433	0.4085	1	1593000			28291	29338	20137	20303	27748	27748					-0.022555043278771336
LAFERGYEF	9	Unmodified	_LAFERGYEF_					0	0	0		FBXO45|p.K259Tfs*13|1|0.35|ENSG00000174013|chr3:196584232-196584244|AAGGTCTGCTTAT/-|frameshift_variant;ENSG00000174013|ENST00000311630|FBXO45	FBXO45|p.K259Tfs*13|1|0.35|ENSG00000174013|chr3:196584232-196584244|AAGGTCTGCTTAT/-|frameshift_variant	FBXO45|p.K259Tfs*13|1|0.35|ENSG00000174013|chr3:196584232-196584244|AAGGTCTGCTTAT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	566.6974487304688	2	566.277106	1130.53966	-0.41203	-0.00023332	-2.9063	-0.0016458	-3.3183	-0.0018791	566.2745963869603	76.626	1.37	77.366	76.893	78.263	0.74052					31	26	2	0	0	0	0.22013	1	29046	29046		36.506	10.238	1	2416000			28292	7849	20138	20304	27749	27749					-0.020388474193850925
LAFERRHEF	9	Unmodified	_LAFERRHEF_					0	0	0		ENSG00000128274|ENST00000642412|A4GALT	ENSG00000128274|ENST00000642412|A4GALT	ENSG00000128274|ENST00000642412|A4GALT	MULTI-MSMS	A375_MHC_IP_R1	1	402.61236572265625	3	402.21224	1203.61489	-0.47598	-0.00019144	0.51511	0.00020718	0.03913	1.5738E-05	402.21252760438307	31.155	0.45562	31.155	30.959	31.414	0					23	8	4	0	0	0	0.35164	1	9976	9976		27.088	12.131	1	5370100			28293	4127	20139	20305	27750	27750					0.021227548317028777
LAFIFFFSL	9	Unmodified	_LAFIFFFSL_					0	0	0		B4GALT6|p.H146Sfs*8|1|0.12|ENSG00000118276|chr18:31645391-31645392|-/C|frameshift_variant;nc|ENSG00000118276|Q9UBX8-2|B4GALT6;ENSG00000118276|ENST00000306851|B4GALT6	B4GALT6|p.H146Sfs*8|1|0.12|ENSG00000118276|chr18:31645391-31645392|-/C|frameshift_variant	B4GALT6|p.H146Sfs*8|1|0.12|ENSG00000118276|chr18:31645391-31645392|-/C|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	552.6972045898438	2	552.810054	1103.60555	-0.71696	-0.00039634	2.0364	0.0011258	1.3195	0.00072941	552.8108021410405	70.167	0.30531	70.901	70.743	71.048	0.73421					8	5	2	0	0	0	0.71541	1	26626	26626		16.942	4.7016	1	1054200			28294	223	20140	20306	27751	27751					0.05789593493454959
LAFKHFKHKE	10	Unmodified	_LAFKHFKHKE_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	A375_MHC_IP_R2	2	429.31195068359375	3	428.911902	1283.71388	-0.49641	-0.00021292	-0.041027	-1.7597E-05	-0.53744	-0.00023051	429.2462946055774	61.833	0.40428	62.575	62.319	62.724	0.74263					18	7	3	0	0	0	0.71076	1	23456	23456		7.4771	1.6089	1	2582800			28295	1612	20141	20307	27752	27752					0.08336777796580463
LAFKRQQDL	9	Unmodified	_LAFKRQQDL_					0	0	0		ENSG00000183230|ENST00000433211|CTNNA3;nc|ENSG00000183230|Q9UI47-2|CTNNA3	ENSG00000183230|ENST00000433211|CTNNA3	ENSG00000183230|ENST00000433211|CTNNA3	MULTI-MSMS	A375_MHC_IP_R2	2	559.7341918945312	2	559.819473	1117.62439	-0.60957	-0.00034125	-0.44464	-0.00024892	-1.0542	-0.00059017	560.322800160429	95.992	0.15244	96.742	96.653	96.805	0.75045					4	2	2	0	0	0	0.55818	1	36437	36437		16.942	1.0951	1	772370			28296	8475	20142	20308	27753	27753					0.07028523117219265
LAFLFLLPSP	10	Unmodified	_LAFLFLLPSP_					0	0	0			REV__ENST00000415128.6_1_6:142623466-142692070:+|nuORF	REV__ENST00000415128.6_1_6:142623466-142692070:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	372.6134033203125	3	373.226716	1116.65832	0.20766	7.7504E-05	-0.85605	-0.0003195	-0.64839	-0.000242	373.56085930552297	40.881	0.40805	41.656	41.386	41.794	0.77451					11	7	2	0	0	0	0.93799	1	15189	15189		6.1918	4.4496	1	753610	+		28297	17732	20143	20309	27754	27754					0.10465551556262653
LAFLPDAAY	9	Unmodified	_LAFLPDAAY_					0	0	0		ENST00000420776.1_1_1:28969754-28969871:+|nuORF	ENST00000420776.1_1_1:28969754-28969871:+|nuORF	ENST00000420776.1_1_1:28969754-28969871:+|nuORF	MSMS	A375_MHC_IP_R1	1	490.67626953125	2	490.758018	979.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.52	1	52.52	52.02	53.02	0								0	0	0	0.1521	1	18681	18681		18.135	0	1				28298	11730	20144	20310	27755	27755					0.010912666659351089
LAFPRLVASV	10	Unmodified	_LAFPRLVASV_					0	0	0		GPRIN2|p.K260R|1|0.1|ENSG00000204175|chr10:46549958-46549958|T/C|missense_variant	GPRIN2|p.K260R|1|0.1|ENSG00000204175|chr10:46549958-46549958|T/C|missense_variant	GPRIN2|p.K260R|1|0.1|ENSG00000204175|chr10:46549958-46549958|T/C|missense_variant	MSMS	A375_MHC_IP_R2	2	358.2887268066406	3	358.221965	1071.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.9	1	29.599	29.099	30.099	0.69872								0	0	0	0.14971	1	10038	10038		18.373	3.1246	1				28299	14075	20145	20311	27756	27756					0.11110899127993434
LAFPRLVASV	10	Unmodified	_LAFPRLVASV_					0	0	0		GPRIN2|p.K260R|1|0.1|ENSG00000204175|chr10:46549958-46549958|T/C|missense_variant	GPRIN2|p.K260R|1|0.1|ENSG00000204175|chr10:46549958-46549958|T/C|missense_variant	GPRIN2|p.K260R|1|0.1|ENSG00000204175|chr10:46549958-46549958|T/C|missense_variant	MSMS	A375_MHC_IP_R2	2	358.2609558105469	3	358.221965	1071.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.911	1	29.61	29.11	30.11	0.69872								0	0	0	0.15222	1	10044	10044		13.615	0	1				28300	14075	20145	20311	27757	27757					0.11110899127993434
LAFVAHVIALY	11	Unmodified	_LAFVAHVIALY_					0	0	0			REV__ENSG00000183625|ENST00000395940|CCR3;REV__ENSG00000163823|ENST00000296140|CCR1	REV__ENSG00000183625|ENST00000395940|CCR3	MSMS	A375_MHC_IP_R1	1	608.9324340820312	2	608.858067	1215.70158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.198	1	93.198	92.698	93.698	0								0	0	0	0.1629	1	34257	34257		3.5965	0.60125	1		+		28301	21765;20420	20146	20312	27758	27758					0.1023574133355396
LAFWVGGLV	9	Unmodified	_LAFWVGGLV_					0	0	0		OR6S1|p.C150F|1|0.38|ENSG00000181803|chr14:20641243-20641243|C/A|missense_variant	OR6S1|p.C150F|1|0.38|ENSG00000181803|chr14:20641243-20641243|C/A|missense_variant	OR6S1|p.C150F|1|0.38|ENSG00000181803|chr14:20641243-20641243|C/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	481.6783752441406	2	481.278921	960.543289	-0.50332	-0.00024224	-0.57511	-0.00027679	-1.0784	-0.00051903	481.2786263519637	88.405	0.65788	89.137	88.875	89.533	0.7318					19	12	2	0	0	0	0.4045	1	33645	33645		36.466	2.0644	1	3002500			28302	15094	20147	20313	27759	27759					0.061438671451583104
LAGAGGGDQEV	11	Unmodified	_LAGAGGGDQEV_					0	0	0			REV__ENST00000399510.6_3_17:7122197-7122365:-|nuORF	REV__ENST00000399510.6_3_17:7122197-7122365:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	487.6693115234375	2	487.232896	972.451239	-0.14255	-6.9456E-05	0.84925	0.00041378	0.7067	0.00034433	487.23329214738845	47.693	0.20137	47.693	47.567	47.768	0					5	3	2	0	0	0	0.72119	1	16788	16788		13.906	1.3745	1	1029800	+		28303	24394	20148	20314	27760	27760					-0.03608887729842536
LAGAKLTW	8	Unmodified	_LAGAKLTW_					0	0	0			REV__ENSG00000108839|ENST00000251535|ALOX12	REV__ENSG00000108839|ENST00000251535|ALOX12	MULTI-SECPEP	A375_MHC_IP_R1	1	430.9253234863281	2	430.255446	858.496338	-0.31231	-0.00013437	-0.079306	-3.4122E-05	-0.39162	-0.0001685	430.25531131921565	46.876	0.45902	46.876	46.596	47.055	0					11	8	2	0	0	0	0.972	1	16498	16498		2.3027	0	1	1970500	+		28304	17559	20149	20315	27761	27761					0.061430075939824746
LAGALDLSSCP	11	Unmodified	_LAGALDLSSCP_					0	0	0		nc|ENSG00000162006|Q96KJ4|MSLNL;ENSG00000162006|ENST00000543963|MSLNL	nc|ENSG00000162006|Q96KJ4|MSLNL	nc|ENSG00000162006|Q96KJ4|MSLNL	MULTI-SECPEP	A375_MHC_IP_R1	1	523.6693725585938	2	523.762975	1045.5114	-0.42073	-0.00022036	-1.0864	-0.00056904	-1.5072	-0.00078941	523.7629072142325	93.566	1.3711	93.566	93.023	94.394	0					38	26	2	0	0	0	0.86298	1	34306	34306		9.3831	0	1	1110800			28305	6502	20150	20316	27762	27762					-0.009539133909584052
LAGAQKAL	8	Unmodified	_LAGAQKAL_					0	0	0		ENSG00000236543|ENST00000430816|unknown	ENSG00000236543|ENST00000430816|unknown	ENSG00000236543|ENST00000430816|unknown	MULTI-MSMS	A375_MHC_IP_R1	1	386.6401062011719	2	386.239796	770.465038	-0.10915	-4.2157E-05	1.3974	0.00053972	1.2882	0.00049757	386.2402902993847	143.74	0.35016	143.74	143.58	143.94	0					9	6	2	0	0	0	0.77839	1	55147	55147		0.79363	0	1	1882400			28306	9752	20151	20317	27763	27763					0.0706243455990716
LAGAQKAL	8	Unmodified	_LAGAQKAL_					0	0	0		ENSG00000236543|ENST00000430816|unknown	ENSG00000236543|ENST00000430816|unknown	ENSG00000236543|ENST00000430816|unknown	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	386.239796	770.465038	0.059429	2.2954E-05	2.1422	0.00082741	2.2017	0.00085037	386.24057316370414	143.74	0.40308	143.77	143.59	143.99	0.024414	0.011877	0.0001513	NaN	0.79363	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2080600			28307	9752	20151	20317							0.0706243455990716
LAGAVFRKIGT	11	Unmodified	_LAGAVFRKIGT_					0	0	0			REV__nc|ENSG00000116984|Q99707-2|MTR	REV__nc|ENSG00000116984|Q99707-2|MTR	MULTI-SECPEP	A375_MHC_IP_R2	2	567.2447509765625	2	566.84549	1131.67643	-0.41807	-0.00023698	-0.34114	-0.00019337	-0.75921	-0.00043035	566.8453036635489	72.973	0.40742	73.709	73.48	73.887	0.73541					14	7	2	0	0	0	0.98977	1	27737	27737		3.5965	0	1	1423100	+		28308	17984	20152	20318	27764	27764					0.11585686530997918
LAGAYRKFAD	10	Unmodified	_LAGAYRKFAD_					0	0	0			REV__USP14|p.L133F|1|0.29|ENSG00000101557|chr18:180332-180332|C/T|missense_variant	REV__USP14|p.L133F|1|0.29|ENSG00000101557|chr18:180332-180332|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	556.6976318359375	2	556.298373	1110.58219	-0.94182	-0.00052393	-0.29368	-0.00016337	-1.2355	-0.00068731	556.2983764747696	41.459	0.45901	41.459	41.215	41.674	0					18	8	3	0	0	0	0.8125	1	14387	14387		13.042	0	1	3364400	+		28309	28966	20153	20319	27765	27765					0.03132547708855782
LAGDAFLNSL	10	Unmodified	_LAGDAFLNSL_					0	0	0		ENSG00000113645|ENST00000265293|WWC1;nc|ENSG00000113645|Q8IX03-2|WWC1	ENSG00000113645|ENST00000265293|WWC1	ENSG00000113645|ENST00000265293|WWC1	MULTI-SECPEP	A375_MHC_IP_R2	2	511.1705322265625	2	510.771657	1019.52876	-0.56869	-0.00029047	0.04931	2.5186E-05	-0.51938	-0.00026528	510.7716516563144	115.51	0.60619	116.2	115.88	116.49	0.68999					27	11	3	0	0	0	0.043506	1	43500	43500		96.111	0	1	9283700			28310	3171	20154	20320	27766	27766					0.01977750206322071
LAGEDEQQL	9	Unmodified	_LAGEDEQQL_					0	0	0			REV__ENSG00000188827|ENST00000294008|SLX4	REV__ENSG00000188827|ENST00000294008|SLX4	MSMS	A375_MHC_IP_R1	1	501.67938232421875	2	501.740554	1001.46655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.09	1	106.09	105.59	106.59	0								0	0	0	0.15131	1	38946	38946		19.439	0.18201	1		+		28311	22118	20155	20321	27767	27767					-0.03412020932660198
LAGFLTGAAI	10	Unmodified	_LAGFLTGAAI_					0	0	0		ENST00000588360.1_1_19:11471945-11474676:+|nuORF;nc|ENSG00000105520|Q96GM1|PLPPR2;nc|ENSG00000105520|Q96GM1-2|PLPPR2;ENSG00000105520|ENST00000688289|PLPPR2	ENST00000588360.1_1_19:11471945-11474676:+|nuORF	ENST00000588360.1_1_19:11471945-11474676:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	467.6736145019531	2	467.273835	932.533118	0.24632	0.0001151	-0.30993	-0.00014482	-0.063612	-2.9724E-05	467.2736018830641	69.504	0.66086	69.504	69.121	69.782	0					20	12	2	0	0	0	0.32951	1	25218	25218		37.974	7.3375	1	2851000			28312	2615	20156	20322	27768	27768					0.0641525941987311
LAGGGKKLN	9	Unmodified	_LAGGGKKLN_					0	0	0			REV__nc|ENSG00000205744|Q8IV53-2|DENND1C	REV__nc|ENSG00000205744|Q8IV53-2|DENND1C	MULTI-MSMS	A375_MHC_IP_R1	1	429.2911071777344	2	429.263802	856.513051	-0.14371	-6.1691E-05	-0.34718	-0.00014903	-0.49089	-0.00021072	429.26366741746665	40.825	0.30282	40.825	40.66	40.963	0					10	5	2	0	0	0	0.35581	1	14054	14054		26.884	1.4843	1	1220600	+		28313	22581	20157	20323	27769	27769					0.07905508479927903
LAGGKHRS	8	Unmodified	_LAGGKHRS_					0	0	0		SLC12A8|p.G63Dfs*82|1|0.15|ENSG00000221955|chr3:125190385-125190386|-/CAGT|frameshift_variant;ENST00000473262.5_1_3:124837626-124909342:-|nuORF	SLC12A8|p.G63Dfs*82|1|0.15|ENSG00000221955|chr3:125190385-125190386|-/CAGT|frameshift_variant	SLC12A8|p.G63Dfs*82|1|0.15|ENSG00000221955|chr3:125190385-125190386|-/CAGT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	412.630126953125	2	413.238119	824.461684	-0.054505	-2.2523E-05	0.16493	6.8157E-05	0.11043	4.5633E-05	413.23810946889705	106.78	1.2201	107.54	107.19	108.41	0.75977					36	23	2	0	0	0	0.972	1	40628	40628		6.3541	3.4649	1	1507700			28314	12385	20158	20324	27770	27770					0.04243184505901354
LAGGSSSG	8	Unmodified	_LAGGSSSG_					0	0	0			REV__ENSG00000148400|ENST00000651671|NOTCH1	REV__ENSG00000148400|ENST00000651671|NOTCH1	MULTI-SECPEP	A375_MHC_IP_R1	1	635.4080810546875	1	635.299495	634.292219	-0.50212	-0.00031899	1.0528	0.00066882	0.55065	0.00034983	635.3040477514177	110.21	0.25233	110.21	109.99	110.24	0					5	4	2	0	0	0	0.972	1	40382	40382		5.7604	0	1	446840	+		28315	19629	20159	20325	27771	27771					-0.039555565673140336
LAGGWGAV	8	Unmodified	_LAGGWGAV_					0	0	0		ENST00000467201.5_1_7:100174858-100176198:-|nuORF	ENST00000467201.5_1_7:100174858-100176198:-|nuORF	ENST00000467201.5_1_7:100174858-100176198:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	366.097900390625	2	365.697764	729.380974	0.35182	0.00012866	0.56624	0.00020707	0.91805	0.00033573	365.69788821593914	71.005	0.81776	71.005	70.698	71.516	0					40	15	3	0	0	0	0.972	1	25985	25985		0.79363	0.79363	1	7774200			28316	12277	20160	20326	27772	27772					0.005459034630007409
LAGKARKTAL	10	Unmodified	_LAGKARKTAL_					0	0	0		ENST00000531971.1_1_11:118660717-118660978:-|nuORF	ENST00000531971.1_1_11:118660717-118660978:-|nuORF	ENST00000531971.1_1_11:118660717-118660978:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	514.6759643554688	2	514.832383	1027.65021	-1.0718	-0.00055181	0.0015176	7.8133E-07	-1.0703	-0.00055103	514.8324329822534	61.17	0.5033	61.915	61.618	62.121	0.74504					14	9	2	0	0	0	0.91556	1	23133	23133		6.2058	0	1	1533600			28317	13181	20161	20327	27773	27773					0.1374941735948596
LAGKKKGFSL	10	Unmodified	_LAGKKKGFSL_					0	0	0		ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6796264648438	2	524.829309	1047.64407	-0.45595	-0.0002393	-0.037132	-1.9488E-05	-0.49309	-0.00025879	525.3305426234547	59.828	0.35622	59.828	59.599	59.955	0					8	6	2	0	0	0	0.88918	1	21538	21538		8.7454	0.58988	1	1046600			28318	3466	20162	20328	27774	27774					0.12214899127980061
LAGLYGALSV	10	Unmodified	_LAGLYGALSV_					0	0	0			REV__chr17:81645629-81647457|416|49.6|0.09|9.16|+|ENST00000621293|TSPAN10,TSPAN10	REV__chr17:81645629-81647457|416|49.6|0.09|9.16|+|ENST00000621293|TSPAN10,TSPAN10	MULTI-SECPEP	A375_MHC_IP_R2	2	482.677978515625	2	482.279118	962.543683	-0.41659	-0.00020091	-3.6911	-0.0017801	-4.1077	-0.0019811	482.2787336825715	86.23	0.45767	86.963	86.642	87.1	0.733					17	8	3	0	0	0	0.83086	1	32827	32827		21.747	2.4897	1	1828100	+		28319	15726	20163	20329	27775	27775					0.06091242074319325
LAGLYGALSV	10	Unmodified	_LAGLYGALSV_					0	0	0			REV__chr17:81645629-81647457|416|49.6|0.09|9.16|+|ENST00000621293|TSPAN10,TSPAN10	REV__chr17:81645629-81647457|416|49.6|0.09|9.16|+|ENST00000621293|TSPAN10,TSPAN10	MULTI-MATCH	A375_MHC_IP_R1	1		2	482.279118	962.543683	-0.46311	-0.00022335	-2.7345	-0.0013188	-3.1976	-0.0015422	482.2788179135095	87.009	0.60954	87.009	86.73	87.34	0	0.022717	0.00024518	NaN	21.747	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1465800	+		28320	15726	20163	20329							0.06091242074319325
LAGNEDPQ	8	Unmodified	_LAGNEDPQ_					0	0	0		ENSG00000164654|ENST00000340080|MIOS;nc|ENSG00000164654|Q9NXC5-2|MIOS	ENSG00000164654|ENST00000340080|MIOS	ENSG00000164654|ENST00000340080|MIOS	MSMS	A375_MHC_IP_R1	1	422.1709899902344	2	422.195782	842.377011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.005	1	70.005	69.505	70.505	0								0	0	0	0.16876	1	25411	25411		13.508	3.3245	1				28321	6860	20164	20330	27776	27776					-0.0504823082137591
LAGPLRIE	8	Unmodified	_LAGPLRIE_					0	0	0			REV__ENSG00000228672|ENST00000434752|PROB1	REV__ENSG00000228672|ENST00000434752|PROB1	MULTI-MSMS	A375_MHC_IP_R2	2	435.1659240722656	2	434.766178	867.517802	-0.56074	-0.00024379	-0.018817	-8.1812E-06	-0.57956	-0.00025197	434.7661329819273	61.802	1.1636	62.545	62.17	63.333	0.74263					54	22	4	0	0	0	0.30248	1	23360	23360		58.679	4.846	1	41561000	+		28322	22737	20165	20331	27777	27777					0.07874392622704818
LAGPLRPAA	9	Unmodified	_LAGPLRPAA_					0	0	0		ENST00000522309.1_1_X:134185341-134186138:-|nuORF;ENSG00000203950|ENST00000370775|RTL8A;ENST00000520964.1_1_X:134185341-134186186:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	432.6583251953125	2	433.266345	864.518136	-0.36213	-0.0001569	0.027225	1.1796E-05	-0.33491	-0.0001451	433.26626177071853	36.871	0.40187	36.871	36.644	37.045	0					13	7	2	0	0	0	0.39388	1	12327	12327		39.957	15.283	1	4640600			28323	13023	20166	20332	27778	27778					0.08045812342550107
LAGPLRPAA	9	Unmodified	_LAGPLRPAA_					0	0	0		ENST00000522309.1_1_X:134185341-134186138:-|nuORF;ENSG00000203950|ENST00000370775|RTL8A;ENST00000520964.1_1_X:134185341-134186186:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	433.6659851074219	2	433.266345	864.518136	-0.38944	-0.00016873	-0.1264	-5.4763E-05	-0.51584	-0.0002235	433.2662446749187	36.019	0.4085	36.782	36.537	36.946	0.76338					13	7	2	0	0	0	0.25276	1	13081	13081		34.102	1.797	1	3933700			28324	13023	20166	20332	27779	27779					0.08045812342550107
LAGQLEAVL	9	Unmodified	_LAGQLEAVL_					0	0	0			REV__ENST00000565537.1_1_16:2510121-2510671:+|nuORF	REV__ENST00000565537.1_1_16:2510121-2510671:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	457.6711730957031	2	457.271293	912.528032	-0.21855	-9.9937E-05	-2.9253	-0.0013377	-3.1439	-0.0014376	457.2710463981954	42.697	0.50665	43.469	43.268	43.775	0.7724					16	9	2	0	0	0	0.070818	1	15911	15911		56.177	5.322	1	2812800	+		28325	26230	20167	20333	27780	27780					0.06826955557278325
LAGQLEAVL	9	Unmodified	_LAGQLEAVL_					0	0	0			REV__ENST00000565537.1_1_16:2510121-2510671:+|nuORF	REV__ENST00000565537.1_1_16:2510121-2510671:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	457.271293	912.528032	-0.21855	-9.9937E-05	-2.9253	-0.0013377	-3.1439	-0.0014376	457.2710463981954	42.697	0.50665	43.469	43.268	43.775	0.7724	-0.073027	-0.00024632	NaN	56.177	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2812800	+		28326	26230	20167	20333							0.06826955557278325
LAGRCLKLFA	10	Unmodified	_LAGRCLKLFA_					0	0	0			REV__ENST00000441290.6_1_7:114296499-114304492:+|nuORF	REV__ENST00000441290.6_1_7:114296499-114304492:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1091.1231689453125	1	1091.6394	1090.63212	-0.11665	-0.00012734	-1.8563	-0.0020264	-1.973	-0.0021538	1092.639051446392	120.43	0.96095	120.43	119.84	120.8	0					23	18	2	0	0	0	0.94421	1	44545	44545		3.9444	1.0552	1	140330000	+		28327	24807	20168	20334	27781	27781					0.09042959113139659
LAGREVGQ	8	Unmodified	_LAGREVGQ_					0	0	0			REV__ENST00000288014.6_1_14:24025628-24025787:+|nuORF	REV__ENST00000288014.6_1_14:24025628-24025787:+|nuORF	MSMS	A375_MHC_IP_R2	2	415.1504211425781	2	415.229959	828.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.272	1	37.043	36.543	37.543	0.7709								0	0	0	0.16876	1	13210	13210		24.674	1.5255	1		+		28328	23344	20169	20335	27782	27782					0.024280585491396778
LAGRGGSKLAL	11	Unmodified	_LAGRGGSKLAL_					0	0	0			REV__ENST00000418273.2_1_10:88730536-88730896:-|nuORF	REV__ENST00000418273.2_1_10:88730536-88730896:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	522.2218017578125	2	521.822015	1041.62948	-0.88627	-0.00046248	-0.17867	-9.3233E-05	-1.0649	-0.00055571	521.8218226780764	58.257	0.40623	59.006	58.729	59.135	0.74894					14	7	3	0	0	0	0.90584	1	22005	22005		4.897	0	1	4191900	+		28329	24552	20170	20336	27783	27783					0.110328269798174
LAGRLFHLS	9	Unmodified	_LAGRLFHLS_					0	0	0		nc|ENSG00000188992|Q6XZB0-7|LIPI	nc|ENSG00000188992|Q6XZB0-7|LIPI	nc|ENSG00000188992|Q6XZB0-7|LIPI	MULTI-SECPEP	A375_MHC_IP_R1	1	507.6977233886719	2	507.298176	1012.5818	-0.74233	-0.00037658	-0.23138	-0.00011738	-0.97371	-0.00049396	507.2978382980639	68.229	1.0652	68.229	67.854	68.92	0					61	20	5	0	0	0	0.39388	1	24687	24687		32.305	11.852	1	7934400			28330	14829	20171	20337	27784	27784					0.07601172779641274
LAGRSTPASL	10	Unmodified	_LAGRSTPASL_					0	0	0			REV__ENST00000254605.10_1_11:6624718-6624838:-|nuORF	REV__ENST00000254605.10_1_11:6624718-6624838:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	489.1587219238281	2	486.777274	971.539994	-0.45936	-0.00022361	0.17656	8.5944E-05	-0.28281	-0.00013766	486.77735245247396	37.939	1.2743	37.939	37.658	38.933	0					53	24	5	0	0	0	0.6502	1	12822	12822		17.113	2.2746	1	99019000	+		28331	23140	20172	20338	27785	27785					0.053085723004642205
LAGSAVIAFGL	11	Unmodified	_LAGSAVIAFGL_					0	0	0		TSPAN2|p.K154Tfs*19|1|0.44|ENSG00000134198|chr1:115057579-115057592|TTCGGAGCTTTCTT/-|frameshift_variant;nc|ENSG00000134198|O60636-2|TSPAN2;ENSG00000134198|ENST00000369516|TSPAN2	TSPAN2|p.K154Tfs*19|1|0.44|ENSG00000134198|chr1:115057579-115057592|TTCGGAGCTTTCTT/-|frameshift_variant	TSPAN2|p.K154Tfs*19|1|0.44|ENSG00000134198|chr1:115057579-115057592|TTCGGAGCTTTCTT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	510.2178955078125	2	509.800217	1017.58588	-0.79357	-0.00040456	-0.054559	-2.7814E-05	-0.84813	-0.00043238	509.8003411534461	65.034	0.71017	65.772	65.41	66.121	0.73812					33	13	4	0	0	0	0.62518	1	24590	24590		16.149	0	1	2794400			28332	4554	20173	20339	27786	27786					0.07779217482709555
LAGSLSVP	8	Unmodified	_LAGSLSVP_					0	0	0		ADGRB2|p.P932L|1|0.73|ENSG00000121753|chr1:31737733-31737733|G/A|missense_variant	ADGRB2|p.P932L|1|0.73|ENSG00000121753|chr1:31737733-31737733|G/A|missense_variant	ADGRB2|p.P932L|1|0.73|ENSG00000121753|chr1:31737733-31737733|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	743.3155517578125	1	743.429781	742.422505	-0.83469	-0.00062053	-0.29934	-0.00022254	-1.134	-0.00084307	743.429689327838	103.08	0.50895	103.84	103.63	104.14	0.76428					14	9	2	0	0	0	0.44468	1	39098	39098		44.407	6.2558	1	2570800			28333	65	20174	20340	27787	27787					0.04099039431662277
LAGSPSWLW	9	Unmodified	_LAGSPSWLW_					0	0	0		ENST00000546155.5_1_19:41116274-41117985:+|nuORF	ENST00000546155.5_1_19:41116274-41117985:+|nuORF	ENST00000546155.5_1_19:41116274-41117985:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	509.70281982421875	2	508.763635	1015.51272	-0.374	-0.00019028	-0.30838	-0.00015689	-0.68238	-0.00034717	508.76354385793917	89.323	0.81223	89.323	88.867	89.679	0					32	14	3	0	0	0	0.50735	1	32906	32906		19.439	1.2926	1	2883100			28334	13328	20175	20341	27788	27788					0.005580887600899587
LAGVGVGW	8	Unmodified	_LAGVGVGW_					0	0	0		ENST00000527357.5_1_11:803400-803736:-|nuORF	ENST00000527357.5_1_11:803400-803736:-|nuORF	ENST00000527357.5_1_11:803400-803736:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	379.62298583984375	2	379.713414	757.412274	-0.32831	-0.00012466	0.75347	0.0002861	0.42516	0.00016144	379.71358381562646	59.609	0.55632	60.356	59.996	60.553	0.74714					16	10	2	0	0	0	0.972	1	22619	22619		2.8892	2.0956	1	1749200			28335	13099	20176	20342	27789	27789					0.02386476497088097
LAGVKAYI	8	Unmodified	_LAGVKAYI_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-SECPEP	A375_MHC_IP_R1	1	418.1579284667969	2	417.757821	833.501089	0.11222	4.688E-05	0.99258	0.00041466	1.1048	0.00046154	417.7577508390245	52.558	0.30674	52.558	52.387	52.694	0					8	5	2	0	0	0	0.93416	1	18716	18716		9.3474	0.75416	1	2621700			28336	3839	20177	20343	27790	27790					0.07767891736750698
LAGWHRIAI	9	Unmodified	_LAGWHRIAI_					0	0	0		ENSG00000129667|ENST00000675367|RHBDF2;nc|ENSG00000129667|Q6PJF5|RHBDF2;ENST00000590168.5_1_17:74467717-74469013:-|nuORF;ENSG00000007384|ENST00000262316|RHBDF1	ENSG00000129667|ENST00000675367|RHBDF2;ENSG00000007384|ENST00000262316|RHBDF1	ENSG00000129667|ENST00000675367|RHBDF2	MULTI-SECPEP	A375_MHC_IP_R2	2	519.2051391601562	2	518.806168	1035.59778	-0.67015	-0.00034768	-1.1048	-0.00057315	-1.7749	-0.00092083	518.8053298199936	45.786	0.50229	46.552	46.353	46.855	0.76519					21	9	4	0	0	0	0.52144	1	17143	17143		23.148	0	1	6739300			28337	4205;942	20178	20344	27791	27791					0.08140879016536928
LAGWPGWQMA	10	Unmodified	_LAGWPGWQMA_					0	0	0			REV__ENST00000330701.5_1_8:144333181-144341984:+|nuORF	REV__ENST00000330701.5_1_8:144333181-144341984:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	558.1619262695312	2	558.768394	1115.52224	-0.37778	-0.00021109	0.83284	0.00046537	0.45506	0.00025428	558.7689476127308	47.711	0.30287	47.711	47.567	47.87	0					9	5	2	0	0	0	0.92051	1	16803	16803		1.8442	0	1	1284300	+		28338	23623	20179	20345	27792	27792					-0.0309046622603546
LAGWVLEW	8	Unmodified	_LAGWVLEW_					0	0	0		ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	MULTI-SECPEP	A375_MHC_IP_R1	1	487.10601806640625	2	487.260728	972.506903	-0.54469	-0.0002654	-0.27948	-0.00013618	-0.82416	-0.00040158	487.26065519356126	41.24	0.40617	41.24	41.013	41.419	0					12	7	2	0	0	0	0.96296	1	14143	14143		5.7604	5.0701	1	1409500			28339	4829	20180	20346	27793	27793					0.019549902484072845
LAGWVLEW	8	Unmodified	_LAGWVLEW_					0	0	0		ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	MULTI-MATCH	A375_MHC_IP_R2	2		2	487.260728	972.506903	-0.67107	-0.00032699	-0.58049	-0.00028285	-1.2516	-0.00060984	487.26036213359737	40.402	0.40557	41.177	40.98	41.386	0.77451	-0.031616	-0.00012736	NaN	5.7604	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1561500			28340	4829	20180	20346							0.019549902484072845
LAHATMLSGY	10	Unmodified	_LAHATMLSGY_					0	0	0		ENST00000424512.5_1_3:50388322-50388850:+|nuORF	ENST00000424512.5_1_3:50388322-50388850:+|nuORF	ENST00000424512.5_1_3:50388322-50388850:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	354.9075622558594	3	355.179548	1062.51682	-0.25734	-9.1403E-05	-0.1573	-5.587E-05	-0.41464	-0.00014727	355.1794920223355	39.673	0.81165	39.673	39.391	40.203	0					35	15	4	0	0	0	0.70793	1	13571	13571		5.0475	0	1	15292000			28341	11775	20181	20347	27794	27794					-0.011941898085069624
LAHELPLW	8	Unmodified	_LAHELPLW_					0	0	0			REV__ENST00000592771.5_1_19:5917623-5941693:-|nuORF	REV__ENST00000592771.5_1_19:5917623-5941693:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	490.17376708984375	2	489.774003	977.533452	-0.38213	-0.00018716	-0.38595	-0.00018903	-0.76808	-0.00037618	489.7737618531551	85.923	0.50974	86.656	86.438	86.948	0.73301					15	9	2	0	0	0	0.68446	1	32678	32678		45.75	11.563	1	2653900	+		28342	26451	20182	20348	27795	27795					0.04378679139745145
LAHEMCNTV	9	Unmodified	_LAHEMCNTV_					0	0	0			REV__ENSG00000139547|ENST00000398138|RDH16	REV__ENSG00000139547|ENST00000398138|RDH16	MULTI-SECPEP	A375_MHC_IP_R1	1	509.6897277832031	2	509.228245	1016.44194	-0.39407	-0.00020067	-1.7292	-0.00088058	-2.1233	-0.0010813	509.2271618325881	59.704	0.40591	59.704	59.397	59.803	0					11	7	2	0	0	0	0.71541	1	21395	21395		11.64	0.81637	1	1305800	+		28343	19163	20183	20349	27796	27796					-0.06562695611387426
LAHETSCY	8	Unmodified	_LAHETSCY_					0	0	0			REV__nc|ENSG00000177706|Q8IXL6-2|FAM20C	REV__nc|ENSG00000177706|Q8IXL6-2|FAM20C	MSMS	A375_MHC_IP_R1	1	462.1898193359375	2	462.20001	922.385467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.428	1	73.428	72.928	73.928	0								0	0	0	0.16876	1	26735	26735		9.3474	2.9933	1		+		28344	21470	20184	20350	27797	27797					-0.07883000176400401
LAHETSCY	8	Unmodified	_LAHETSCY_					0	0	0			REV__nc|ENSG00000177706|Q8IXL6-2|FAM20C	REV__nc|ENSG00000177706|Q8IXL6-2|FAM20C	MSMS	A375_MHC_IP_R2	2	462.18902587890625	2	462.20001	922.385467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.388	1	73.123	72.623	73.623	0.73541								0	0	0	0.16876	1	27470	27470		9.3474	2.9933	1		+		28345	21470	20184	20350	27798	27798					-0.07883000176400401
LAHETSCY	8	Unmodified	_LAHETSCY_					0	0	0			REV__nc|ENSG00000177706|Q8IXL6-2|FAM20C	REV__nc|ENSG00000177706|Q8IXL6-2|FAM20C	MSMS	A375_MHC_IP_R2	2	462.1895751953125	2	462.20001	922.385467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.414	1	73.15	72.65	73.65	0.73541								0	0	0	0.16876	1	27481	27481		9.3474	3.587	1		+		28346	21470	20184	20350	27799	27799					-0.07883000176400401
LAHGPTPFL	9	Unmodified	_LAHGPTPFL_					0	0	0		ENST00000392795.7_1_17:62006477-62006537:-|nuORF	ENST00000392795.7_1_17:62006477-62006537:-|nuORF	ENST00000392795.7_1_17:62006477-62006537:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	477.67645263671875	2	476.766178	951.517802	-0.4279	-0.00020401	-0.094436	-4.5024E-05	-0.52233	-0.00024903	476.766139791508	95.721	1.426	96.471	95.785	97.211	0.75045					47	27	3	0	0	0	0.40079	1	36435	36435		24.674	5.2349	1	5594900			28347	11428	20185	20351	27800	27800					0.04010392622706149
LAHLVTNGV	9	Unmodified	_LAHLVTNGV_					0	0	0			REV__ENST00000572919.1_3_17:3488830-3495572:-|nuORF	REV__ENST00000572919.1_3_17:3488830-3495572:-|nuORF	MSMS	A375_MHC_IP_R2	2	462.5460510253906	2	462.269084	922.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.279	1	76.018	75.518	76.518	0.73862								0	0	0	0.15486	1	28574	28574		8.5933	1.304	1		+		28348	22224	20186	20352	27801	27801					0.05925491134371441
LAHTHRVTL	9	Unmodified	_LAHTHRVTL_					0	0	0		nc|ENSG00000153093|Q9NUZ1-2|ACOXL;nc|ENSG00000153093|Q9NUZ1|ACOXL;ENSG00000153093|ENST00000439055|ACOXL	nc|ENSG00000153093|Q9NUZ1-2|ACOXL	nc|ENSG00000153093|Q9NUZ1-2|ACOXL	MULTI-SECPEP	A375_MHC_IP_R1	1	523.7237548828125	2	524.306532	1046.59851	-0.40318	-0.00021139	1.2511	0.00065596	0.84792	0.00044457	524.3090712025197	92.015	0.15279	92.015	91.906	92.059	0					4	2	2	0	0	0	0.50702	1	33797	33797		25.399	0	1	245740			28349	6005	20187	20353	27802	27802					0.07707673665595394
LAHYLLGL	8	Unmodified	_LAHYLLGL_					0	0	0		nc|ENSG00000164038|Q86UD5-2|SLC9B2;ENSG00000164038|ENST00000394785|SLC9B2;ENST00000515424.5_1_4:103970048-103988653:-|nuORF	nc|ENSG00000164038|Q86UD5-2|SLC9B2	nc|ENSG00000164038|Q86UD5-2|SLC9B2	MULTI-SECPEP	A375_MHC_IP_R1	1	449.6630859375	2	450.271096	898.527639	-0.30189	-0.00013593	-1.3171	-0.00059307	-1.619	-0.000729	450.2697074748605	80.654	1.4754	80.654	79.828	81.303	0					49	28	3	0	0	0	0.972	1	29610	29610		6.3541	0	1	4146800			28350	6761	20188	20354	27803	27803					0.07431580628076517
LAIAHDRSV	9	Unmodified	_LAIAHDRSV_					0	0	0			REV__AluSq2_dup25958|chr8:11842628-11842936:-|1.576180839398445|0.0949023208327711|4.05|472.0|11|3|sense	REV__AluSq2_dup25958|chr8:11842628-11842936:-|1.576180839398445|0.0949023208327711|4.05|472.0|11|3|sense	MULTI-SECPEP	A375_MHC_IP_R1	1	491.6300048828125	2	491.277441	980.540328	-0.31372	-0.00015412	-1.5148	-0.0007442	-1.8285	-0.00089832	491.27644846646706	74.968	0.25506	74.968	74.805	75.06	0					6	4	2	0	0	0	0.67221	1	27250	27250		8.5933	0	1	487270	+		28351	15376	20189	20355	27804	27804					0.04927992020327565
LAIAILIRKRL	11	Unmodified	_LAIAILIRKRL_					0	0	0			REV__ENST00000588465.5_1_19:10713206-10745972:+|nuORF	REV__ENST00000588465.5_1_19:10713206-10745972:+|nuORF	MSMS	A375_MHC_IP_R2	2	427.294189453125	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.676	1	59.424	58.924	59.924	0.74859								0	0	0	0.1635	1	22200	22200		0.50596	0	1		+		28352	18489	20190	20356	27805	27805					0.25807349203978447
LAIEHLIRFRL	11	Unmodified	_LAIEHLIRFRL_					0	0	0			REV__ENST00000522965.1_1_8:90770176-90802641:+|nuORF	REV__ENST00000522965.1_1_8:90770176-90802641:+|nuORF	MSMS	A375_MHC_IP_R1	1	690.9376220703125	2	690.927346	1379.84014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.37	1	127.37	126.87	127.87	0								0	0	0	0.1629	1	48801	48801		3.5965	0	1		+		28353	17313	20191	20357	27806	27806					0.16541284301888481
LAIELIENK	9	Unmodified	_LAIELIENK_					0	0	0			REV__nc|ENSG00000068885|Q9P2H3-2|IFT80	REV__nc|ENSG00000068885|Q9P2H3-2|IFT80	MULTI-SECPEP	A375_MHC_IP_R2	2	522.210205078125	2	521.810782	1041.60701	-0.53002	-0.00027657	-0.96089	-0.0005014	-1.4909	-0.00077797	521.8105368600267	64.493	0.45869	65.234	64.954	65.412	0.74022					19	8	3	0	0	0	0.3213	1	24442	24442		46.021	2.2486	1	3170300	+		28354	16549	20192	20358	27807	27807					0.0878718279154782
LAIHSISSYA	10	Unmodified	_LAIHSISSYA_					0	0	0			REV__ENST00000498999.2_1_5:134262808-134262898:-|nuORF	REV__ENST00000498999.2_1_5:134262808-134262898:-|nuORF	MSMS	A375_MHC_IP_R1	1	531.3780517578125	2	531.284931	1060.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.684	1	71.684	71.184	72.184	0								0	0	0	0.12316	1	26056	26056		37.974	6.7057	1		+		28355	25482	20193	20359	27808	27808					0.02745439097657254
LAIKTVEEI	9	Unmodified	_LAIKTVEEI_					0	0	0		ENST00000505604.1_1_5:112437417-112440086:-|nuORF;ENST00000502648.5_1_5:112437417-112458501:-|nuORF;nc|ENSG00000171444|P23508|MCC;ENSG00000171444|ENST00000408903|MCC	ENST00000505604.1_1_5:112437417-112440086:-|nuORF	ENST00000505604.1_1_5:112437417-112440086:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	508.6744079589844	2	508.305332	1014.59611	-0.47252	-0.00024019	-0.38092	-0.00019362	-0.85345	-0.00043381	508.30532377833595	89.805	0.35279	89.805	89.628	89.981	0					10	6	2	0	0	0	0.4261	1	33002	33002		30.637	0	1	1320200			28356	7599	20194	20360	27809	27809					0.08939780417267684
LAILAERSL	9	Unmodified	_LAILAERSL_					0	0	0			REV__ENSG00000185863|ENST00000413619|TMEM210	REV__ENSG00000185863|ENST00000413619|TMEM210	MULTI-SECPEP	A375_MHC_IP_R1	1	492.716796875	2	493.305667	984.596781	-0.41339	-0.00020393	0.22093	0.00010899	-0.19246	-9.494E-05	493.3057642295233	95.54	0.60571	95.54	95.261	95.867	0					18	11	2	0	0	0	0.4261	1	35101	35101		37.974	0	1	2167800	+		28357	21925	20195	20361	27810	27810					0.10386619857001733
LAILRNEEF	9	Unmodified	_LAILRNEEF_					0	0	0			REV__tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1	REV__tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	369.6131591796875	3	368.873113	1103.59751	0.35018	0.00012917	-0.79499	-0.00029325	-0.44481	-0.00016408	368.8728171116292	48.008	0.30075	48.769	48.582	48.883	0.76127					9	5	2	0	0	0	0.74875	1	17990	17990		10.8	8.7135	1	1025700	+		28358	28208	20196	20362	27811	27811					0.04985414506040797
LAILSETEFL	10	Unmodified	_LAILSETEFL_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-SECPEP	A375_MHC_IP_R2	2	568.7157592773438	2	568.315897	1134.61724	-0.41362	-0.00023507	0.003149	1.7896E-06	-0.41047	-0.00023328	568.3157771238216	106.68	0.55947	107.44	107.14	107.7	0.75977					26	10	4	0	0	0	0.32951	1	40317	40317		46.021	9.8939	1	3309700			28359	4853	20197	20363	27812	27812					0.05531745726148074
LAIPKRLR	8	Unmodified	_LAIPKRLR_					0	0	0		ENST00000544307.1_1_12:20725060-20833202:+|nuORF;ENSG00000172572|ENST00000359062|PDE3A	ENST00000544307.1_1_12:20725060-20833202:+|nuORF	ENST00000544307.1_1_12:20725060-20833202:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	484.23193359375	2	483.832186	965.649819	-0.58492	-0.000283	0.033257	1.6091E-05	-0.55166	-0.00026691	483.83219204728954	36.69	0.65752	36.69	36.439	37.096	0					30	12	3	0	0	0	0.90224	1	12271	12271		19.439	5.9311	1	17818000			28360	7723	20198	20364	27813	27813					0.1656204243030288
LAIPQILLSI	10	Unmodified	_LAIPQILLSI_					0	0	0			REV__ENST00000514057.1_1_1:569411-569753:+|nuORF	REV__ENST00000514057.1_1_1:569411-569753:+|nuORF	MSMS	A375_MHC_IP_R2	2	541.0291137695312	2	540.854993	1079.69543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.758	1	80.503	80.003	81.003	0.74474								0	0	0	0.15283	1	30274	30274		11.64	0	1		+		28361	25647	20199	20365	27814	27814					0.15877223102052085
LAIQRNASA	9	Unmodified	_LAIQRNASA_					0	0	0		nc|ENSG00000151687|Q7Z5J8-2|ANKAR;ENSG00000151687|ENST00000684021|ANKAR	nc|ENSG00000151687|Q7Z5J8-2|ANKAR	nc|ENSG00000151687|Q7Z5J8-2|ANKAR	MULTI-SECPEP	A375_MHC_IP_R1	1	472.66943359375	2	472.269616	942.524678	-0.34997	-0.00016528	-0.1701	-8.0334E-05	-0.52007	-0.00024561	472.26949376342526	36.007	0.61126	36.007	35.727	36.339	0					21	11	2	0	0	0	0.62767	1	12039	12039		16.942	0	1	12426000			28362	5919	20200	20366	27815	27815					0.05111705503270514
LAISDALKA	9	Unmodified	_LAISDALKA_					0	0	0			REV__ENSG00000177409|ENST00000318238|SAMD9L	REV__ENSG00000177409|ENST00000318238|SAMD9L	MULTI-MSMS	A375_MHC_IP_R1	1	451.6716003417969	2	451.271293	900.528032	-0.43569	-0.00019661	0.68929	0.00031106	0.2536	0.00011444	451.27148629119824	66.964	1.1237	66.964	66.428	67.552	0					42	21	3	0	0	0	0.034481	1	24228	24228		71.134	0.80159	1	28998000	+		28363	21455	20201	20367	27816	27816					0.07378955557271638
LAISDALKA	9	Unmodified	_LAISDALKA_					0	0	0			REV__ENSG00000177409|ENST00000318238|SAMD9L	REV__ENSG00000177409|ENST00000318238|SAMD9L	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	451.271293	900.528032	-0.43569	-0.00019661	0.68929	0.00031106	0.2536	0.00011444	451.27148629119824	66.964	1.1237	66.964	66.428	67.552	0	0.078696	9.3558E-05	NaN	71.134	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28998000	+		28364	21455	20201	20367							0.07378955557271638
LAISDALKA	9	Unmodified	_LAISDALKA_					0	0	0			REV__ENSG00000177409|ENST00000318238|SAMD9L	REV__ENSG00000177409|ENST00000318238|SAMD9L	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	451.271293	900.528032	-0.46652	-0.00021053	0.48037	0.00021678	0.013852	6.2509E-06	451.27141051813436	66.069	1.4787	66.807	66.273	67.752	0.73811	-0.078696	-9.4999E-05	NaN	71.134	55	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27508000	+		28365	21455	20201	20367							0.07378955557271638
LAISGMDIL	9	Unmodified	_LAISGMDIL_					0	0	0		ENSG00000175485|ENST00000311352|OR52W1	ENSG00000175485|ENST00000311352|OR52W1	ENSG00000175485|ENST00000311352|OR52W1	MULTI-MSMS	A375_MHC_IP_R1	1	467.1589660644531	2	466.759704	931.504854	-0.39371	-0.00018377	-1.3588	-0.00063423	-1.7525	-0.00081799	466.7589298736287	83.912	0.5561	83.912	83.736	84.292	0					21	10	3	0	0	0	0.3054	1	30727	30727		30.225	5.5509	1	2937300			28366	7964	20202	20368	27817	27817					0.03636193448301128
LAISGMDIL	9	Unmodified	_LAISGMDIL_					0	0	0		ENSG00000175485|ENST00000311352|OR52W1	ENSG00000175485|ENST00000311352|OR52W1	ENSG00000175485|ENST00000311352|OR52W1	MULTI-MATCH	A375_MHC_IP_R2	2		2	466.759704	931.504854	-0.63395	-0.0002959	-1.816	-0.00084764	-2.45	-0.0011435	466.7588540348839	82.984	0.50377	83.724	83.444	83.947	0.73962	-0.09396	-0.00026978	NaN	30.225	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2464700			28367	7964	20202	20368							0.03636193448301128
LAKARKPDI	9	Unmodified	_LAKARKPDI_					0	0	0			REV__nc|ENSG00000152795|O14979-3|HNRNPDL	REV__nc|ENSG00000152795|O14979-3|HNRNPDL	MULTI-MSMS	A375_MHC_IP_R1	1	506.7187805175781	2	506.319109	1010.62366	-0.23026	-0.00011658	-0.30481	-0.00015433	-0.53507	-0.00027092	506.3189289086883	71.181	1.5719	71.181	70.902	72.474	0					66	30	4	0	0	0	0.082375	1	25821	25821		53.833	2.203	1	36963000	+		28368	19818	20203	20369	27818	27818					0.11877728468175519
LAKCYLSL	8	Unmodified	_LAKCYLSL_					0	0	0			REV__ENST00000565881.5_1_15:75130108-75132610:-|nuORF;REV__ENSG00000140474|ENST00000440863|ULK3	REV__ENSG00000140474|ENST00000440863|ULK3	MULTI-SECPEP	A375_MHC_IP_R1	1	455.9890441894531	2	455.756964	909.499375	-0.24262	-0.00011058	1.3768	0.00062749	1.1342	0.00051692	455.75736824770894	60.286	0.20336	60.286	60.159	60.363	0					6	3	2	0	0	0	0.90224	1	21681	21681		8.5933	0	1	500990	+		28369	26237;19215	20204	20370	27819	27819					0.04100514656488485
LAKDQSTVLI	10	Unmodified	_LAKDQSTVLI_					0	0	0			REV__RGL2|p.P677L|1|0.28|ENSG00000237441|chr6:33292522-33292522|G/A|missense_variant	REV__RGL2|p.P677L|1|0.28|ENSG00000237441|chr6:33292522-33292522|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	362.5976257324219	3	363.216768	1086.62847	0.36059	0.00013097	0.96521	0.00035058	1.3258	0.00048155	363.2170873456805	42.643	0.35377	42.643	42.436	42.79	0					10	6	2	0	0	0	0.93041	1	14772	14772		7.9454	0	1	1880500	+		28370	27884	20205	20371	27820	27820					0.08862567820278855
LAKDQSTVLI	10	Unmodified	_LAKDQSTVLI_					0	0	0			REV__RGL2|p.P677L|1|0.28|ENSG00000237441|chr6:33292522-33292522|G/A|missense_variant	REV__RGL2|p.P677L|1|0.28|ENSG00000237441|chr6:33292522-33292522|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	543.6357421875	2	544.321514	1086.62847	-0.38984	-0.0002122	-0.67434	-0.00036706	-1.0642	-0.00057926	544.3212994068269	42.609	0.30325	42.609	42.487	42.79	0					11	5	3	0	0	0	0.88361	1	14799	14799		24.021	0.87215	1	2186500	+		28371	27884	20205	20371	27821	27821					0.08862567820278855
LAKELSEK	8	Unmodified	_LAKELSEK_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST;REV__nc|ENSG00000151914|Q03001-8|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	A375_MHC_IP_R1	1	459.65618896484375	2	459.26875	916.522947	-0.2949	-0.00013544	0.21481	9.8658E-05	-0.080082	-3.6779E-05	459.26877740577186	40.201	0.35624	40.201	39.999	40.355	0					14	6	3	0	0	0	0.972	1	13718	13718		2.3027	0	1	3790000	+		28372	19783;27289	20206	20372	27822	27822					0.06134651694674176
LAKENKLW	8	Unmodified	_LAKENKLW_					0	0	0			REV__nc|ENSG00000101605|P52179-2|MYOM1	REV__nc|ENSG00000101605|P52179-2|MYOM1	MULTI-SECPEP	A375_MHC_IP_R1	1	501.1459045410156	2	501.292559	1000.57057	-0.35389	-0.0001774	-0.39473	-0.00019787	-0.74861	-0.00037527	501.2921456969266	59.558	0.25393	59.558	59.448	59.701	0					7	4	2	0	0	0	0.95423	1	21425	21425		7.9102	0	1	895610	+		28373	17178	20207	20373	27823	27823					0.07030350685522535
LAKHIWKLRKK	11	Unmodified	_LAKHIWKLRKK_					0	0	0			REV__ENSG00000108312|ENST00000436088|UBTF	REV__ENSG00000108312|ENST00000436088|UBTF	MSMS	A375_MHC_IP_R2	2	710.8475341796875	2	710.966806	1419.91906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.389	1	49.146	48.646	49.646	0.75737								0	0	0	0.1636	1	18170	18170		0	0	1		+		28374	17523	20208	20374	27824	27824					0.22589556326784077
LAKHSTIQNL	10	Unmodified	_LAKHSTIQNL_					0	0	0			REV__TET1|p.P2105T|1|0.37|ENSG00000138336|chr10:68691716-68691716|C/A|missense_variant	REV__TET1|p.P2105T|1|0.37|ENSG00000138336|chr10:68691716-68691716|C/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	375.9242248535156	3	375.552262	1123.63496	0.5056	0.00018988	-0.28112	-0.00010557	0.22449	8.4307E-05	375.5520625929702	22.993	0.50359	22.993	22.723	23.227	0					20	9	3	0	0	0	0.69833	1	6341	6341		7.9454	0	1	6560000	+		28375	28097	20209	20375	27825	27825					0.07808505771663476
LAKKAQAQ	8	Unmodified	_LAKKAQAQ_					0	0	0		ENST00000402768.1_1_6:139935577-139935790:-|nuORF;ENSG00000116459|ENST00000369722|ATP5PB	ENST00000402768.1_1_6:139935577-139935790:-|nuORF	ENST00000402768.1_1_6:139935577-139935790:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	429.2908020019531	2	429.263802	856.513051	-0.47428	-0.00020359	0.13118	5.6312E-05	-0.3431	-0.00014728	429.26387019102594	41.129	0.30467	41.904	41.743	42.047	0.77451					8	5	2	0	0	0	0.76248	1	15218	15218		16.942	0	1	1486600			28376	3397	20210	20376	27826	27826					0.07905508479939272
LAKLEAIY	8	Unmodified	_LAKLEAIY_					0	0	0			REV__ENST00000263398.10_1_11:35253875-35253914:+|nuORF	REV__ENST00000263398.10_1_11:35253875-35253914:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	461.0825500488281	2	460.776211	919.537869	-0.25116	-0.00011573	-0.27713	-0.0001277	-0.52829	-0.00024342	460.77628423044246	64.149	0.30254	64.149	63.99	64.292	0					8	5	2	0	0	0	0.92636	1	23227	23227		23.148	0	1	803010	+		28377	23225	20211	20377	27827	27827					0.07488143562659388
LAKLEAIY	8	Unmodified	_LAKLEAIY_					0	0	0			REV__ENST00000263398.10_1_11:35253875-35253914:+|nuORF	REV__ENST00000263398.10_1_11:35253875-35253914:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	460.776211	919.537869	-0.39366	-0.00018139	-0.37913	-0.0001747	-0.7728	-0.00035609	460.7760313451418	63.334	0.30368	64.075	63.835	64.139	0.74022	-0.037043	-3.6745E-05	NaN	23.148	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	611610	+		28378	23225	20211	20377							0.07488143562659388
LAKLKKFIAY	10	Unmodified	_LAKLKKFIAY_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-SECPEP	A375_MHC_IP_R1	1	597.10888671875	2	597.884084	1193.75362	-0.41299	-0.00024692	-0.83556	-0.00049957	-1.2486	-0.00074649	598.3845017016174	83.538	0.55939	83.538	83.075	83.634	0					13	10	2	0	0	0	0.94311	1	30458	30458		1.8442	1.4435	1	873300			28379	2155	20212	20378	27828	27828					0.1644890474733529
LAKLRSINP	9	Unmodified	_LAKLRSINP_					0	0	0		ENSG00000115904|ENST00000402219|SOS1	ENSG00000115904|ENST00000402219|SOS1	ENSG00000115904|ENST00000402219|SOS1	MULTI-SECPEP	A375_MHC_IP_R1	1	505.6893615722656	2	506.319109	1010.62366	-0.23026	-0.00011658	-0.30481	-0.00015433	-0.53507	-0.00027092	506.3189289086883	71.181	1.5719	71.181	70.902	72.474	0					66	30	4	0	0	0	0.14606	1	25933	25933		47.594	7.3552	1	36963000			28380	3349	20213	20379	27829	27829					0.1187772846816415
LAKLRSINP	9	Unmodified	_LAKLRSINP_					0	0	0		ENSG00000115904|ENST00000402219|SOS1	ENSG00000115904|ENST00000402219|SOS1	ENSG00000115904|ENST00000402219|SOS1	MULTI-MSMS	A375_MHC_IP_R2	2	506.71881103515625	2	506.319109	1010.62366	-0.68403	-0.00034634	-0.37838	-0.00019158	-1.0624	-0.00053792	506.3189273065652	70.232	1.9248	70.966	70.591	72.516	0.73421					75	37	5	0	0	0	0.39434	1	26806	26806		24.991	4.5373	1	37306000			28381	3349	20213	20379	27830	27830					0.1187772846816415
LAKMENESI	9	Unmodified	_LAKMENESI_					0	0	0		CYP4A22|p.G303E|1|0.09|ENSG00000162365|chr1:47144560-47144560|G/A|missense_variant	CYP4A22|p.G303E|1|0.09|ENSG00000162365|chr1:47144560-47144560|G/A|missense_variant	CYP4A22|p.G303E|1|0.09|ENSG00000162365|chr1:47144560-47144560|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	518.162841796875	2	517.762975	1033.5114	-0.46812	-0.00024237	0.44245	0.00022908	-0.025664	-1.3288E-05	517.7632192681326	95.01	0.40648	95.76	95.583	95.99	0.75045					14	7	2	0	0	0	0.56537	1	36125	36125		12.241	0	1	1720000			28382	703	20214	20380	27831	27831					-0.004019133909878292
LAKNFFNEL	9	Unmodified	_LAKNFFNEL_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2;ENST00000535804.1_1_12:6637788-6638275:+|nuORF	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-SECPEP	A375_MHC_IP_R1	1	548.6952514648438	2	548.295299	1094.57605	-0.744	-0.00040793	-0.1617	-8.8657E-05	-0.9057	-0.00049659	548.2952811038376	86.283	1.0112	86.283	85.87	86.881	0					31	19	2	0	0	0	0.0065039	1	31573	31573		155.03	155.03	1	19416000			28383	976	20215	20381	27832	27832					0.03254029477329823
LAKNGLKSFS	10	Unmodified	_LAKNGLKSFS_					0	0	0		ENSG00000196664|ENST00000380659|TLR7	ENSG00000196664|ENST00000380659|TLR7	ENSG00000196664|ENST00000380659|TLR7	MULTI-SECPEP	A375_MHC_IP_R2	2	533.1846923828125	2	532.808574	1063.60259	-0.55864	-0.00029765	-0.29514	-0.00015725	-0.85378	-0.0004549	532.8087613554986	43.454	0.35481	44.227	44.028	44.383	0.7724					10	6	2	0	0	0	0.90513	1	16114	16114		2.4985	0	1	1071300			28384	9073	20216	20382	27833	27833					0.07333718368658992
LAKNLQKHL	9	Unmodified	_LAKNLQKHL_					0	0	0		nc|ENSG00000106733|Q9NWW6-2|NMRK1;ENSG00000106733|ENST00000361092|NMRK1	nc|ENSG00000106733|Q9NWW6-2|NMRK1	nc|ENSG00000106733|Q9NWW6-2|NMRK1	MULTI-MSMS	A375_MHC_IP_R1	1	355.60125732421875	3	355.557348	1063.65021	-0.41437	-0.00014733	-0.69591	-0.00024744	-1.1103	-0.00039477	355.55689014247855	29.144	0.55788	29.144	28.845	29.403	0					20	10	4	0	0	0	0.64136	1	9075	9075		12.241	0	1	2718900			28385	2709	20217	20383	27834	27834					0.1209341735950602
LAKNYIKSL	9	Unmodified	_LAKNYIKSL_					0	0	0		ENSG00000180535|ENST00000609256|BHLHA15	ENSG00000180535|ENST00000609256|BHLHA15	ENSG00000180535|ENST00000609256|BHLHA15	MULTI-SECPEP	A375_MHC_IP_R1	1	525.7022705078125	2	525.321317	1048.62808	-0.77344	-0.00040631	0.026518	1.393E-05	-0.74693	-0.00039238	525.3215139171134	41.7	0.20486	41.7	41.521	41.725	0					6	3	2	0	0	0	0.76187	1	14389	14389		7.2892	0.56607	1	927020			28386	8303	20218	20384	27835	27835					0.10571192891075043
LAKPRVLKL	9	Unmodified	_LAKPRVLKL_					0	0	0			REV__nc|ENSG00000157368|Q6ZMJ4-2|IL34	REV__nc|ENSG00000157368|Q6ZMJ4-2|IL34	MULTI-SECPEP	A375_MHC_IP_R2	2	518.6768188476562	2	519.363319	1036.71209	-0.72414	-0.00037609	-3.4997	-0.0018176	-4.2239	-0.0021937	519.361202233621	80.498	0.30451	81.243	81.112	81.416	0.74474					6	5	2	0	0	0	0.79683	1	30573	30573		5.2307	0	1	803470	+		28387	20025	20219	20385	27836	27836					0.1951976877865036
LAKQMHPS	8	Unmodified	_LAKQMHPS_					0	0	0			REV__nc|ENSG00000120903|Q15822-2|CHRNA2	REV__nc|ENSG00000120903|Q15822-2|CHRNA2	MSMS	A375_MHC_IP_R1	1	456.1712951660156	2	456.242012	910.469472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.928	1	30.928	30.428	31.428	0								0	0	0	0.16876	1	9876	9876		18.135	4.6271	1		+		28388	18140	20220	20386	27837	27837					0.010655757111635467
LAKQMHPS	8	Unmodified	_LAKQMHPS_					0	0	0			REV__nc|ENSG00000120903|Q15822-2|CHRNA2	REV__nc|ENSG00000120903|Q15822-2|CHRNA2	MSMS	A375_MHC_IP_R2	2	456.171142578125	2	456.242012	910.469472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.311	1	31.03	30.53	31.53	0.71857								0	0	0	0.16876	1	10648	10648		18.135	7.9516	1		+		28389	18140	20220	20386	27838	27838					0.010655757111635467
LAKQPGVSV	9	Unmodified	_LAKQPGVSV_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	MULTI-SECPEP	A375_MHC_IP_R1	1	450.1712646484375	2	449.77146	897.528367	-0.60158	-0.00027057	0.5872	0.00026411	-0.014374	-6.465E-06	449.7715890219408	29.378	0.25206	29.378	29.201	29.453	0					6	4	2	0	0	0	0.01128	1	9199	9199		114.65	49.414	1	8067300			28390	8491	20221	20387	27839	27839					0.07550375277151034
LAKQPGVSV	9	Unmodified	_LAKQPGVSV_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	MULTI-MATCH	A375_MHC_IP_R2	2		2	449.77146	897.528367	-0.92345	-0.00041534	0.51266	0.00023058	-0.41079	-0.00018476	449.77144718123276	28.66	0.20028	29.358	29.283	29.484	0.69872	-0.0096787	-6.0056E-05	NaN	114.65	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6381700			28391	8491	20221	20387							0.07550375277151034
LAKRDQLN	8	Unmodified	_LAKRDQLN_					0	0	0			REV__ENSG00000086570|ENST00000261800|FAT2	REV__ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	A375_MHC_IP_R2	2	479.6763000488281	2	479.277441	956.540328	-0.44288	-0.00021226	0.18313	8.7771E-05	-0.25974	-0.00012449	479.27740587608423	109.27	5.8121	110.01	107.38	113.19	0.74683					289	113	4	0	0	0	0.77488	1	40638	40638		13.508	0	1	18458000	+		28392	16857	20222	20388	27840	27840					0.060319920203255606
LAKRILRP	8	Unmodified	_LAKRILRP_					0	0	0			REV__nc|ENSG00000118492|Q8N7X0-2|ADGB	REV__nc|ENSG00000118492|Q8N7X0-2|ADGB	MULTI-SECPEP	A375_MHC_IP_R2	2	484.23211669921875	2	483.832186	965.649819	-0.82121	-0.00039733	0.1774	8.5834E-05	-0.6438	-0.00031149	483.83222665896284	35.395	0.65815	36.158	35.929	36.587	0.76338					29	12	3	0	0	0	0.94479	1	12817	12817		19.439	5.9311	1	15024000	+		28393	18042	20223	20389	27841	27841					0.1656204243032562
LAKRKWQLYKN	11	Unmodified	_LAKRKWQLYKN_					0	0	0		ENSG00000165449|ENST00000395348|SLC16A9	ENSG00000165449|ENST00000395348|SLC16A9	ENSG00000165449|ENST00000395348|SLC16A9	MULTI-MSMS	A375_MHC_IP_R1	1	724.8287353515625	2	724.430253	1446.84595	-0.73551	-0.00053283	-0.53344	-0.00038644	-1.269	-0.00091927	724.4298475758997	80.598	0.30372	80.598	80.492	80.795	0					8	5	2	0	0	0	0.73679	1	29482	29482		5.2969	1.4206	1	2081700			28394	6952	20224	20390	27842	27842					0.14040382813550423
LAKSLCIL	8	Unmodified	_LAKSLCIL_					0	0	0		nc|ENSG00000178125|Q7Z4L9-2|PPP1R42;ENSG00000178125|ENST00000685739|PPP1R42;nc|ENSG00000178125|Q7Z4L9|PPP1R42;ENST00000520633.1_1_8:67922943-67940757:-|nuORF;ENST00000519919.5_1_8:67922943-67926728:-|nuORF;ENST00000521040.5_1_8:67876548-67926755:-|nuORF	nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	MULTI-MSMS	A375_MHC_IP_R2	2	430.665283203125	2	430.767332	859.52011	-0.31197	-0.00013439	-0.13625	-5.8692E-05	-0.44822	-0.00019308	430.76748374057996	55.699	0.45558	56.449	56.186	56.642	0.75032					15	8	2	0	0	0	0.77515	1	21017	21017		12.532	1.7076	1	1265600			28395	8136	20225	20391	27843	27843					0.08473105036148354
LAKSVLAEV	9	Unmodified	_LAKSVLAEV_					0	0	0		nc|ENSG00000196353|Q96A23-2|CPNE4;ENSG00000196353|ENST00000429747|CPNE4;ENST00000514439.1_1_3:131254041-131261643:-|nuORF	nc|ENSG00000196353|Q96A23-2|CPNE4	nc|ENSG00000196353|Q96A23-2|CPNE4	MULTI-MSMS	A375_MHC_IP_R2	2	465.6860656738281	2	465.286943	928.559333	-1.0451	-0.00048629	-0.020745	-9.6522E-06	-1.0659	-0.00049595	465.2869205338948	59.376	0.55486	60.123	59.845	60.4	0.74714					16	10	2	0	0	0	0.11629	1	22461	22461		47.749	2.0491	1	2454700			28396	9028	20226	20392	27844	27844					0.09219528591381732
LAKTKDDVQF	10	Unmodified	_LAKTKDDVQF_					0	0	0			REV__nc|ENSG00000080644|P32297-3|CHRNA3	REV__nc|ENSG00000080644|P32297-3|CHRNA3	MULTI-SECPEP	A375_MHC_IP_R2	2	388.13970947265625	3	388.880156	1163.61864	-0.66665	-0.00025925	-0.7951	-0.0003092	-1.4618	-0.00056845	388.8798377511342	33.793	0.7599	34.545	34.043	34.803	0.75225					17	14	2	0	0	0	0.89761	1	11973	11973		14.957	0	1	1523200	+		28397	16754	20227	20393	27845	27845					0.04337379814887754
LAKTRLGGQL	10	Unmodified	_LAKTRLGGQL_					0	0	0			REV__ENSG00000146112|ENST00000274853|PPP1R18	REV__ENSG00000146112|ENST00000274853|PPP1R18	MSMS	A375_MHC_IP_R2	2	352.932861328125	3	352.888986	1055.64513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.767	1	31.485	30.985	31.985	0.71857								0	0	0	0.15306	1	10836	10836		10.899	0.099449	1		+		28398	19517	20228	20394	27846	27846					0.11953113496906553
LAKVKKTLS	9	Unmodified	_LAKVKKTLS_					0	0	0			REV__nc|ENSG00000130783|Q6P9F0-2|CCDC62	REV__nc|ENSG00000130783|Q6P9F0-2|CCDC62	MSMS	A375_MHC_IP_R2	2	494.7320556640625	2	494.331685	986.648816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.9	1	111.63	111.13	112.13	0.73692								0	0	0	0.15486	1	41824	41824		7.9102	2.6795	1		+		28399	18566	20229	20395	27847	27847					0.1549578327076233
LALACQLAKV	10	Unmodified	_LALACQLAKV_					0	0	0			REV__nc|ENSG00000132122|Q9NWH7-2|SPATA6	REV__nc|ENSG00000132122|Q9NWH7-2|SPATA6	MULTI-SECPEP	A375_MHC_IP_R2	2	515.220703125	2	515.309895	1028.60524	-0.6644	-0.00034237	-1.9156	-0.00098712	-2.58	-0.0013295	515.3073279258305	69.272	0.20206	70.006	69.879	70.081	0.73421					5	3	2	0	0	0	0.85226	1	26250	26250		20.454	0	1	1669100	+		28400	18638	20230	20396	27848	27848					0.09207850501957182
LALAKATL	8	Unmodified	_LALAKATL_					0	0	0			REV__tr|U7SND5|U7SND5_FUSNUNucleosidetransporter/FeoBGTPaseGatedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01804PE=4SV=1	REV__tr|U7SND5|U7SND5_FUSNUNucleosidetransporter/FeoBGTPaseGatedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01804PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	401.1656494140625	2	400.765646	799.516739	-0.3745	-0.00015009	0.30782	0.00012336	-0.06668	-2.6723E-05	400.76569803862367	60.055	0.45541	60.802	60.501	60.957	0.74714					11	8	2	0	0	0	0.69059	1	22714	22714		46.921	0	1	1804100	+		28401	28322	20231	20397	27849	27849					0.10896178253813105
LALALDEYVRL	11	Unmodified	_LALALDEYVRL_					0	0	0		nc|ENSG00000151718|Q6AWC2-5|WWC2;nc|ENSG00000151718|Q6AWC2-4|WWC2;ENSG00000151718|ENST00000403733|WWC2;nc|ENSG00000151718|Q6AWC2-6|WWC2	nc|ENSG00000151718|Q6AWC2-5|WWC2	nc|ENSG00000151718|Q6AWC2-5|WWC2	MULTI-MSMS	A375_MHC_IP_R1	1	638.7685546875	2	638.368995	1274.72344	-0.81556	-0.00052063	-0.030922	-1.974E-05	-0.84648	-0.00054037	638.3689274507618	86.932	0.60793	86.932	86.629	87.237	0					27	11	3	0	0	0	0.63737	2	31880	31880;31965		20.415	7.093	1	4834200			28402	5924	20232	20398	27850;27851	27850					0.09706501291475433
LALALDEYVRL	11	Unmodified	_LALALDEYVRL_					0	0	0		nc|ENSG00000151718|Q6AWC2-5|WWC2;nc|ENSG00000151718|Q6AWC2-4|WWC2;ENSG00000151718|ENST00000403733|WWC2;nc|ENSG00000151718|Q6AWC2-6|WWC2	nc|ENSG00000151718|Q6AWC2-5|WWC2	nc|ENSG00000151718|Q6AWC2-5|WWC2	MULTI-SECPEP	A375_MHC_IP_R2	2	638.7688598632812	2	638.368995	1274.72344	-0.6043	-0.00038577	0.12659	8.0809E-05	-0.47771	-0.00030496	638.3688749872528	86.087	0.55987	86.82	86.592	87.151	0.733					22	10	3	0	0	0	0.86796	1	32758	32758		26.268	3.5319	1	6863600			28403	5924	20232	20398	27852	27852					0.09706501291475433
LALALDEYVRL	11	Unmodified	_LALALDEYVRL_					0	0	0		nc|ENSG00000151718|Q6AWC2-5|WWC2;nc|ENSG00000151718|Q6AWC2-4|WWC2;ENSG00000151718|ENST00000403733|WWC2;nc|ENSG00000151718|Q6AWC2-6|WWC2	nc|ENSG00000151718|Q6AWC2-5|WWC2	nc|ENSG00000151718|Q6AWC2-5|WWC2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	638.368995	1274.72344	-0.81556	-0.00052063	-0.030922	-1.974E-05	-0.84648	-0.00054037	638.3689274507618	86.932	0.60793	86.932	86.629	87.237	0	0.055916	-9.0294E-05	NaN	20.415	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4834200			28404	5924	20232	20398							0.09706501291475433
LALAPEEPVT	10	Unmodified	_LALAPEEPVT_					0	0	0			REV__nc|ENSG00000173567|Q8IZF5-2|ADGRF3	REV__nc|ENSG00000173567|Q8IZF5-2|ADGRF3	MULTI-SECPEP	A375_MHC_IP_R1	1	519.9860229492188	2	520.28714	1038.55973	-0.14956	-7.7816E-05	-0.27754	-0.0001444	-0.4271	-0.00022222	520.2868368487862	69.914	0.40334	69.914	69.681	70.085	0					10	7	2	0	0	0	0.90853	1	25338	25338		15.847	0	1	679390	+		28405	21232	20233	20399	27853	27853					0.0419890352056882
LALAPEEPVT	10	Unmodified	_LALAPEEPVT_					0	0	0			REV__nc|ENSG00000173567|Q8IZF5-2|ADGRF3	REV__nc|ENSG00000173567|Q8IZF5-2|ADGRF3	MULTI-MATCH	A375_MHC_IP_R2	2		2	520.28714	1038.55973	-0.54798	-0.00028511	-0.76316	-0.00039706	-1.3111	-0.00068217	520.2866031052533	69.018	0.45688	69.753	69.423	69.88	0.73511	-0.080536	-0.0002889	NaN	15.847	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	884800	+		28406	21232	20233	20399							0.0419890352056882
LALASSRGP	9	Unmodified	_LALASSRGP_					0	0	0			REV__nc|ENSG00000105327|Q96PG8|BBC3	REV__nc|ENSG00000105327|Q96PG8|BBC3	MSMS	A375_MHC_IP_R2	2	436.1520080566406	2	436.253434	870.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.17	1	101.94	101.44	102.44	0.76428								0	0	0	0.15486	1	38352	38352		10.824	0	1		+		28407	27159	20234	20400	27854	27854					0.05188918100293449
LALATQHLL	9	Unmodified	_LALATQHLL_					0	0	0		ENST00000567020.6_2_16:2551598-2552264:+|nuORF	ENST00000567020.6_2_16:2551598-2552264:+|nuORF	ENST00000567020.6_2_16:2551598-2552264:+|nuORF	MSMS	A375_MHC_IP_R2	2	490.2077331542969	2	490.300384	978.586216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.761	1	65.5	65	66	0.73811								0	0	0	0.15486	1	24553	24553		9.3474	0	1				28408	13566	20235	20401	27855	27855					0.09606637202557522
LALCQSQIREF	11	Unmodified	_LALCQSQIREF_					0	0	0		ENST00000525971.6_1_12:85431954-85518298:+|nuORF;ENSG00000133640|ENST00000393217|LRRIQ1;nc|ENSG00000133640|Q96JM4-2|LRRIQ1	ENST00000525971.6_1_12:85431954-85518298:+|nuORF	ENST00000525971.6_1_12:85431954-85518298:+|nuORF	MSMS	A375_MHC_IP_R1	1	436.60980224609375	3	436.564062	1306.67036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.577	1	21.577	21.077	22.077	0								0	0	0	0.16265	1	5693	5693		2.2527	0	1				28409	4519	20236	20402	27856	27856					0.029288002371458788
LALDDRGY	8	Unmodified	_LALDDRGY_					0	0	0			REV__ENSG00000104412|ENST00000220853|EMC2	REV__ENSG00000104412|ENST00000220853|EMC2	MULTI-SECPEP	A375_MHC_IP_R1	1	462.1351318359375	2	461.735074	921.455596	-0.18266	-8.4342E-05	-0.36772	-0.00016979	-0.55038	-0.00025413	461.73485315569746	104.67	0.55594	104.67	104.39	104.94	0					16	10	2	0	0	0	0.972	1	38440	38440		10.183	0.83596	1	2846600	+		28410	17322	20237	20403	27857	27857					-0.008273785162828062
LALDLSGEKKI	11	Unmodified	_LALDLSGEKKI_					0	0	0			REV__ENST00000529563.5_1_11:17515913-17538079:-|nuORF	REV__ENST00000529563.5_1_11:17515913-17538079:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	396.6392822265625	3	396.239573	1185.69689	-0.38296	-0.00015174	-0.39115	-0.00015499	-0.77411	-0.00030673	396.239177455651	61.857	0.86074	62.6	62.37	63.23	0.74263					29	16	4	0	0	0	0.60387	1	23457	23457		23.016	8.1777	1	4099700	+		28411	16139	20238	20404	27858	27858					0.1114681240014761
LALDLSGEKKI	11	Unmodified	_LALDLSGEKKI_					0	0	0			REV__ENST00000529563.5_1_11:17515913-17538079:-|nuORF	REV__ENST00000529563.5_1_11:17515913-17538079:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	396.239573	1185.69689	-0.38296	-0.00015174	-0.39115	-0.00015499	-0.77411	-0.00030673	396.239177455651	61.857	0.86074	62.6	62.37	63.23	0.74263	-0.066155	-3.1144E-05	NaN	23.016	29	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4099700	+		28412	16139	20238	20404							0.1114681240014761
LALDQPADE	9	Unmodified	_LALDQPADE_					0	0	0			REV__ENSG00000188993|ENST00000682860|LRRC66	REV__ENSG00000188993|ENST00000682860|LRRC66	MULTI-MSMS	A375_MHC_IP_R1	1	486.6796875	2	486.237647	970.460741	-0.15369	-7.473E-05	-0.66796	-0.00032479	-0.82165	-0.00039952	486.237001991157	54.517	0.65751	54.517	54.113	54.771	0					16	12	2	0	0	0	0.44024	1	19473	19473		22.736	4.5899	1	1670400	+		28413	22130	20239	20405	27859	27859					-0.025671194443361856
LALDQPADE	9	Unmodified	_LALDQPADE_					0	0	0			REV__ENSG00000188993|ENST00000682860|LRRC66	REV__ENSG00000188993|ENST00000682860|LRRC66	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	486.237647	970.460741	-0.15369	-7.473E-05	-0.66796	-0.00032479	-0.82165	-0.00039952	486.237001991157	54.517	0.65751	54.517	54.113	54.771	0	-0.085112	-2.4631E-05	NaN	22.736	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1670400	+		28414	22130	20239	20405							-0.025671194443361856
LALFFWNY	8	Unmodified	_LALFFWNY_					0	0	0			REV__ENSG00000223658|ENST00000475092|C1GALT1C1L	REV__ENSG00000223658|ENST00000475092|C1GALT1C1L	MULTI-MSMS	A375_MHC_IP_R1	1	537.6753540039062	2	537.276378	1072.5382	-0.77014	-0.00041378	-1.614	-0.00086715	-2.3841	-0.0012809	537.2755080291986	80.205	1.0234	80.205	79.316	80.34	0					30	19	3	0	0	0	0.70783	1	29251	29251		40.449	10.224	1	4338300	+		28415	22705	20240	20406	27860	27860					0.004835632825233915
LALFNIPPL	9	Unmodified	_LALFNIPPL_					0	0	0		ENST00000557385.1_1_X:119386539-119386587:+|nuORF	ENST00000557385.1_1_X:119386539-119386587:+|nuORF	ENST00000557385.1_1_X:119386539-119386587:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	499.7176818847656	2	499.307678	996.600803	-0.62109	-0.00031011	0.10226	5.1058E-05	-0.51883	-0.00025906	499.30773757500344	132.06	0.35059	132.06	131.88	132.23	0					15	6	3	0	0	0	0.030661	2	50962	50945;50962		74.396	17.855	1	3410900			28416	13449	20241	20407	27861;27862	27862					0.10236709350692763
LALFNIPPL	9	Unmodified	_LALFNIPPL_					0	0	0		ENST00000557385.1_1_X:119386539-119386587:+|nuORF	ENST00000557385.1_1_X:119386539-119386587:+|nuORF	ENST00000557385.1_1_X:119386539-119386587:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	499.70758056640625	2	499.307678	996.600803	-0.51863	-0.00025896	0.38137	0.00019042	-0.13726	-6.8537E-05	499.30778074236576	131.88	0.40329	132.07	131.85	132.25	0.18953					16	7	3	0	0	0	0.069885	1	51905	51905		56.541	9.6204	1	3940500			28417	13449	20241	20407	27863	27863					0.10236709350692763
LALGLAGLE	9	Unmodified	_LALGLAGLE_					0	0	0		ENST00000266546.10_1_12:7310874-7311150:+|nuORF	ENST00000266546.10_1_12:7310874-7311150:+|nuORF	ENST00000266546.10_1_12:7310874-7311150:+|nuORF	MSMS	A375_MHC_IP_R1	1	428.6867370605469	2	428.760561	855.506569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.818	1	73.818	73.318	74.318	0								0	0	0	0.15043	1	26886	26886		20.871	0	1				28418	10354	20242	20408	27864	27864					0.0730357052857471
LALGNLVL	8	Unmodified	_LALGNLVL_					0	0	0			REV__ENSG00000204882|ENST00000377741|GPR20	REV__ENSG00000204882|ENST00000377741|GPR20	MULTI-SECPEP	A375_MHC_IP_R2	2	407.3081359863281	2	406.765646	811.516739	0.066555	2.7072E-05	-0.10028	-4.0792E-05	-0.03373	-1.372E-05	406.76550403061344	67.719	0.35495	68.455	68.308	68.663	0.73631					9	6	2	0	0	0	0.972	1	25694	25694		5.2307	0	1	495030	+		28419	22546	20243	20409	27865	27865					0.10344178253785685
LALGRDSMY	9	Unmodified	_LALGRDSMY_					0	0	0			REV__nc|ENSG00000197381|P78563-5|ADARB1	REV__nc|ENSG00000197381|P78563-5|ADARB1	MSMS	A375_MHC_IP_R1	1	513.454345703125	2	513.257859	1024.50117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.257	1	94.257	93.757	94.757	0								0	0	0	0.15486	1	34646	34646		13.508	1.8676	1		+		28420	27441	20244	20410	27866	27866					-0.010104763255412763
LALGTVHLA	9	Unmodified	_LALGTVHLA_					0	0	0			REV__ENST00000414084.1_1_3:178785539-178789305:-|nuORF	REV__ENST00000414084.1_1_3:178785539-178789305:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	448.173828125	2	447.774003	893.533452	-0.096455	-4.319E-05	-0.52537	-0.00023525	-0.62183	-0.00027844	447.77372891538283	75.221	0.65697	75.221	74.857	75.514	0					25	12	3	0	0	0	0.20094	1	27365	27365		44.407	2.3125	1	3430700	+		28421	24501	20245	20411	27867	27867					0.08242679139743814
LALGTVHLA	9	Unmodified	_LALGTVHLA_					0	0	0			REV__ENST00000414084.1_1_3:178785539-178789305:-|nuORF	REV__ENST00000414084.1_1_3:178785539-178789305:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	448.1743469238281	2	447.774003	893.533452	-0.34643	-0.00015512	0.0037301	1.6703E-06	-0.3427	-0.00015345	447.77393254331315	74.195	0.50754	74.933	74.655	75.163	0.73752					21	9	3	0	0	0	0.20094	1	28140	28140		53.576	11.481	1	4510200	+		28422	24501	20245	20411	27868	27868					0.08242679139743814
LALHAKQP	8	Unmodified	_LALHAKQP_					0	0	0			REV__ENST00000334062.7_1_13:114748460-114748754:-|nuORF	REV__ENST00000334062.7_1_13:114748460-114748754:-|nuORF	MSMS	A375_MHC_IP_R1	1	439.5942687988281	2	439.266345	876.518136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.61	1	140.61	140.11	141.11	0								0	0	0	0.16876	1	54000	54000		2.5775	1.7838	1		+		28423	23652	20246	20412	27869	27869					0.07493812342568162
LALHYFKN	8	Unmodified	_LALHYFKN_					0	0	0		nc|ENSG00000167080|Q8NHY0-3|B4GALNT2;ENSG00000167080|ENST00000393354|B4GALNT2;nc|ENSG00000167080|Q8NHY0|B4GALNT2	nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	MULTI-SECPEP	A375_MHC_IP_R1	1	503.6788635253906	2	503.279452	1004.54435	-0.41238	-0.00020754	-0.92583	-0.00046595	-1.3382	-0.00067349	503.27909750689145	59.072	0.86522	59.072	58.582	59.448	0					34	16	3	0	0	0	0.73517	1	21237	21237		42.968	3.0107	1	8303700			28424	7151	20247	20413	27870	27870					0.0422608151403665
LALHYFKN	8	Unmodified	_LALHYFKN_					0	0	0		nc|ENSG00000167080|Q8NHY0-3|B4GALNT2;ENSG00000167080|ENST00000393354|B4GALNT2;nc|ENSG00000167080|Q8NHY0|B4GALNT2	nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1429748535156	2	503.279452	1004.54435	-0.93193	-0.00046902	-0.45295	-0.00022796	-1.3849	-0.00069698	503.279231068466	58.239	0.6588	58.988	58.578	59.237	0.74894					21	12	2	0	0	0	0.73517	1	22024	22024		34.187	2.0704	1	6119800			28425	7151	20247	20413	27871	27871					0.0422608151403665
LALILLRVKKV	11	Unmodified	_LALILLRVKKV_					0	0	0			REV__ENST00000328405.6_1_3:19554789-19559546:+|nuORF	REV__ENST00000328405.6_1_3:19554789-19559546:+|nuORF	MSMS	A375_MHC_IP_R1	1	633.4560546875	2	633.455208	1264.89586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.482	1	76.482	75.982	76.982	0								0	0	0	0.1636	1	27880	27880		0	0	1		+		28426	23609	20248	20414	27872	27872					0.2740111748946674
LALKKAPPP	9	Unmodified	_LALKKAPPP_					0	0	0			REV__ENSG00000055483|ENST00000449938|USP36	REV__ENSG00000055483|ENST00000449938|USP36	MULTI-SECPEP	A375_MHC_IP_R1	1	467.1524353027344	2	467.807845	933.601138	-0.61247	-0.00028652	-0.077452	-3.6233E-05	-0.68993	-0.00032275	467.80777378705125	26.686	0.40359	26.686	26.524	26.928	0					11	7	2	0	0	0	0.80005	1	7982	7982		4.756	0	1	1463600	+		28427	16414	20249	20415	27873	27873					0.13168129070550094
LALLAIENGI	10	Unmodified	_LALLAIENGI_					0	0	0		tr|U7SGN9|U7SGN9_FUSNU4-hydroxy-3-methylbut-2-en-1-yldiphosphatesynthase(flavodoxin)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispGPE=3SV=1	tr|U7SGN9|U7SGN9_FUSNU4-hydroxy-3-methylbut-2-en-1-yldiphosphatesynthase(flavodoxin)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispGPE=3SV=1	tr|U7SGN9|U7SGN9_FUSNU4-hydroxy-3-methylbut-2-en-1-yldiphosphatesynthase(flavodoxin)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispGPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	513.6607055664062	2	513.813325	1025.6121	-0.89972	-0.00046229	-0.27248	-0.00014001	-1.1722	-0.00060229	513.8131906900899	55.938	0.35708	56.688	56.388	56.745	0.75015					10	6	2	0	0	0	0.90513	1	21085	21085		17.113	7.039	1	911250			28428	29411	20250	20416	27874	27874					0.10031486654179389
LALLARKDY	9	Unmodified	_LALLARKDY_					0	0	0		CON__Q2UVX4	CON__Q2UVX4	CON__Q2UVX4	MULTI-MSMS	A375_MHC_IP_R1	1	532.2183837890625	2	531.818941	1061.62333	-0.42728	-0.00022723	-0.024432	-1.2994E-05	-0.45171	-0.00024023	531.8186257740201	109.93	0.45707	109.93	109.68	110.14	0					14	8	3	0	0	0	0.46038	1	40358	40358		21.747	0	1	1010800		+	28429	614	20251	20417	27875	27875					0.09498308748334239
LALLDAPRL	9	Unmodified	_LALLDAPRL_					0	0	0			REV__nc|ENSG00000289758|Q92902-3|HPS1	REV__nc|ENSG00000289758|Q92902-3|HPS1	MULTI-MSMS	A375_MHC_IP_R1	1	491.7076721191406	2	491.30821	980.601866	-0.2631	-0.00012926	-0.57463	-0.00028232	-0.83773	-0.00041158	491.3075830107944	101.92	1.3156	101.92	101.65	102.96	0					62	25	5	0	0	0	0.021889	1	37423	37423		81.89	3.1622	1	22437000	+		28430	17487	20252	20418	27876	27876					0.11078923719594513
LALLDAPRL	9	Unmodified	_LALLDAPRL_					0	0	0			REV__nc|ENSG00000289758|Q92902-3|HPS1	REV__nc|ENSG00000289758|Q92902-3|HPS1	MULTI-MSMS	A375_MHC_IP_R2	2	491.70794677734375	2	491.30821	980.601866	-0.39918	-0.00019612	-0.20252	-9.9498E-05	-0.6017	-0.00029562	491.3079279511565	101.01	1.4786	101.78	101.34	102.82	0.76428					50	28	3	0	0	0	0.040308	1	38237	38237		68.081	2.8457	1	24395000	+		28431	17487	20252	20418	27877	27877					0.11078923719594513
LALLDLPPSLA	11	Unmodified	_LALLDLPPSLA_					0	0	0			REV__ENST00000543049.1_1_16:57114926-57116437:+|nuORF	REV__ENST00000543049.1_1_16:57114926-57116437:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	375.6316833496094	3	374.897147	1121.66961	0.45204	0.00016947	0.0018023	6.7568E-07	0.45384	0.00017014	374.8970804207283	86.666	0.61226	87.399	87.1	87.712	0.73301					26	11	3	0	0	0	0.73404	1	32956	32956		5.0475	5.0475	1	4889300	+		28432	25974	20253	20419	27878	27878					0.11364328859758643
LALLQSPP	8	Unmodified	_LALLQSPP_					0	0	0			REV__ENST00000392680.6_2_11:126159701-126160841:+|nuORF	REV__ENST00000392680.6_2_11:126159701-126160841:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	420.15509033203125	2	419.755278	837.496004	-0.26425	-0.00011092	0.080687	3.3869E-05	-0.18356	-7.7052E-05	419.7552695375761	35.736	0.407	36.5	36.283	36.69	0.76338					13	7	2	0	0	0	0.95424	1	12998	12998		13.906	0	1	2114300	+		28433	24277	20254	20420	27879	27879					0.07075587874135181
LALLRLLLL	9	Unmodified	_LALLRLLLL_					0	0	0			REV__nc|ENSG00000188986|Q8WX92|NELFB	REV__nc|ENSG00000188986|Q8WX92|NELFB	MULTI-SECPEP	A375_MHC_IP_R1	1	519.0099487304688	2	519.375895	1036.73724	-0.41943	-0.00021784	3.9546	0.0020539	3.5351	0.0018361	519.8801281141237	81.936	0.15228	81.936	81.809	81.961	0					4	2	2	0	0	0	0.79683	1	29926	29926		2.3027	0	1	576230	+		28434	22129	20255	20421	27880	27880					0.22033823581250545
LALLRSQG	8	Unmodified	_LALLRSQG_					0	0	0		ENST00000514900.5_1_3:129122974-129137267:-|nuORF;ENST00000503498.1_1_3:129120438-129130339:-|nuORF;ENSG00000172771|ENST00000505956|EFCAB12	ENST00000514900.5_1_3:129122974-129137267:-|nuORF	ENST00000514900.5_1_3:129122974-129137267:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	429.6639404296875	2	429.263802	856.513051	-0.12665	-5.4364E-05	0.58628	0.00025167	0.45964	0.00019731	429.26406725248495	60.054	0.30526	60.054	59.905	60.21	0					9	5	2	0	0	0	0.7338	1	21661	21661		24.674	0	1	955120			28435	7734	20256	20422	27881	27881					0.0790550847995064
LALLRSQG	8	Unmodified	_LALLRSQG_					0	0	0		ENST00000514900.5_1_3:129122974-129137267:-|nuORF;ENST00000503498.1_1_3:129120438-129130339:-|nuORF;ENSG00000172771|ENST00000505956|EFCAB12	ENST00000514900.5_1_3:129122974-129137267:-|nuORF	ENST00000514900.5_1_3:129122974-129137267:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	429.263802	856.513051	-0.59167	-0.00025398	0.038324	1.6451E-05	-0.55334	-0.00023753	429.26373501695855	58.969	0.35632	59.717	59.54	59.896	0.74714	-0.16872	-0.00019461	NaN	24.674	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	543960			28436	7734	20256	20422							0.0790550847995064
LALLWISSL	9	Unmodified	_LALLWISSL_					0	0	0			REV__ENST00000375916.3_1_6:31624327-31625003:+|nuORF	REV__ENST00000375916.3_1_6:31624327-31625003:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	508.7125549316406	2	508.312961	1014.61137	-0.1691	-8.5956E-05	-0.44978	-0.00022863	-0.61888	-0.00031459	508.31262575067524	111.86	0.45787	111.86	111.62	112.08	0					17	8	3	0	0	0	0.40041	1	41020	41020		30.225	0	1	2942100	+		28437	24136	20257	20423	27882	27882					0.10464692005132292
LALLWISSL	9	Unmodified	_LALLWISSL_					0	0	0			REV__ENST00000375916.3_1_6:31624327-31625003:+|nuORF	REV__ENST00000375916.3_1_6:31624327-31625003:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	508.71295166015625	2	508.312961	1014.61137	-0.56844	-0.00028895	-0.37888	-0.00019259	-0.94732	-0.00048154	508.31277711690694	111.04	0.56022	111.78	111.45	112.01	0.73692					17	10	3	0	0	0	0.40041	1	41860	41860		30.225	0	1	4299800	+		28438	24136	20257	20423	27883	27883					0.10464692005132292
LALMFVLVL	9	Unmodified	_LALMFVLVL_					0	0	0			REV__TFF1|p.S16F|1|0.11|ENSG00000160182|chr21:42366449-42366449|G/A|missense_variant	REV__TFF1|p.S16F|1|0.11|ENSG00000160182|chr21:42366449-42366449|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	510.7464294433594	2	509.822107	1017.62966	-0.58165	-0.00029654	-0.086759	-4.4232E-05	-0.66841	-0.00034077	509.8219827740166	136.42	1.5381	136.53	136.35	137.89	0.11134					67	29	4	0	0	0	0.67372	1	53769	53769		9.3474	0	1	42334000	+		28439	28100	20258	20424	27884	27884					0.12155110655487533
LALMFVLVL	9	Unmodified	_LALMFVLVL_					0	0	0			REV__TFF1|p.S16F|1|0.11|ENSG00000160182|chr21:42366449-42366449|G/A|missense_variant	REV__TFF1|p.S16F|1|0.11|ENSG00000160182|chr21:42366449-42366449|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	509.822107	1017.62966	-0.73583	-0.00037514	0.012645	6.4469E-06	-0.72318	-0.00036869	509.8220322074409	136.52	1.2346	136.52	136.3	137.54	0	-0.0072066	6.2533E-05	NaN	9.3474	67	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44113000	+		28440	28100	20258	20424							0.12155110655487533
LALMFVLVL	9	Unmodified	_LALMFVLVL_					0	0	0			REV__TFF1|p.S16F|1|0.11|ENSG00000160182|chr21:42366449-42366449|G/A|missense_variant	REV__TFF1|p.S16F|1|0.11|ENSG00000160182|chr21:42366449-42366449|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	509.822107	1017.62966	-0.58165	-0.00029654	-0.086759	-4.4232E-05	-0.66841	-0.00034077	509.8219827740166	136.42	1.5381	136.53	136.35	137.89	0.11134	0.0072066	-3.8824E-05	NaN	9.3474	67	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42334000	+		28441	28100	20258	20424							0.12155110655487533
LALMKKVSKSP	11	Unmodified	_LALMKKVSKSP_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	A375_MHC_IP_R2	2	601.1895751953125	2	601.370484	1200.72641	-0.39994	-0.00024051	3.7032	0.002227	3.3033	0.0019865	601.3716761936647	89.912	0.20556	90.644	90.493	90.699	0.7318					5	3	2	0	0	0	0.99109	1	34193	34193		10.074	5.3179	1	473720			28442	9114	20259	20425	27885	27885					0.13408053144644327
LALNQISQI	9	Unmodified	_LALNQISQI_					0	0	0		nc|ENSG00000148187|Q96E11-7|MRRF;nc|ENSG00000148187|Q96E11-5|MRRF;nc|ENSG00000148187|Q96E11-6|MRRF;ENST00000373728.6_1_9:125027203-125047581:+|nuORF;nc|ENSG00000148187|Q96E11-4|MRRF;nc|ENSG00000148187|Q96E11-2|MRRF;nc|ENSG00000148187|Q96E11-8|MRRF;nc|ENSG00000148187|Q96E11-3|MRRF;ENSG00000148187|ENST00000344641|MRRF	nc|ENSG00000148187|Q96E11-7|MRRF	nc|ENSG00000148187|Q96E11-7|MRRF	MULTI-SECPEP	A375_MHC_IP_R2	2	500.695068359375	2	500.295299	998.576045	-0.88294	-0.00044173	-0.053574	-2.6803E-05	-0.93651	-0.00046853	500.29532477919315	56.376	0.45866	57.126	56.847	57.306	0.75015					17	8	3	0	0	0	0.064992	1	21283	21283		68.081	2.8457	1	5879100			28443	5722	20260	20426	27886	27886					0.07670029477333173
LALPEPPITI	10	Unmodified	_LALPEPPITI_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-SECPEP	A375_MHC_IP_R2	2	532.723388671875	2	532.323525	1062.6325	-0.65791	-0.00035022	-0.17935	-9.547E-05	-0.83726	-0.00044569	532.3234327189545	101.94	0.61108	102.7	102.46	103.07	0.76428					26	11	3	0	0	0	0.21723	1	38635	38635		64.236	1.6636	1	4061600	+		28444	21972	20261	20427	27887	27887					0.10368657313983931
LALPGLRELLL	11	Unmodified	_LALPGLRELLL_					0	0	0		nc|ENSG00000100399|Q6NUI6-2|CHADL;ENSG00000100399|ENST00000216241|CHADL	nc|ENSG00000100399|Q6NUI6-2|CHADL	nc|ENSG00000100399|Q6NUI6-2|CHADL	MULTI-SECPEP	A375_MHC_IP_R1	1	604.7924194335938	2	604.392273	1206.76999	-0.51283	-0.00030995	0.92833	0.00056107	0.4155	0.00025112	604.3926523015632	129.42	0.2023	129.42	129.3	129.5	0					7	3	3	0	0	0	0.82939	1	49805	49805		23.79	3.3752	1	7038400			28445	2174	20262	20428	27888	27888					0.17487985913430748
LALPKDLYL	9	Unmodified	_LALPKDLYL_					0	0	0		NPC1L1|p.S881L|1|0.89|ENSG00000015520|chr7:44522238-44522238|G/A|missense_variant	NPC1L1|p.S881L|1|0.89|ENSG00000015520|chr7:44522238-44522238|G/A|missense_variant	NPC1L1|p.S881L|1|0.89|ENSG00000015520|chr7:44522238-44522238|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	523.2021484375	2	523.318243	1044.62193	-0.73565	-0.00038498	0.32527	0.00017022	-0.41038	-0.00021476	523.3184480841516	132.21	0.25027	132.21	132.08	132.33	0					7	4	2	0	0	0	0.43707	1	51003	51003		36.044	9.1605	1	7620500			28446	15020	20263	20429	27889	27889					0.1014067465955577
LALQDEVSAM	10	Unmodified	_LALQDEVSAM_					0	0	0		ENSG00000103148|ENST00000611875|NPRL3	ENSG00000103148|ENST00000611875|NPRL3	ENSG00000103148|ENST00000611875|NPRL3	MSMS	A375_MHC_IP_R2	2	538.6680297851562	2	538.768257	1075.52196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.855	1	51.609	51.109	52.109	0.75406								0	0	0	0.14925	1	19131	19131		19.257	1.1106	1				28447	2423	20264	20430	27890	27890					-0.012779307365690329
LALQIEGL	8	Unmodified	_LALQIEGL_					0	0	0			REV__ENSG00000198965|ENST00000641067|OR10R2	REV__ENSG00000198965|ENST00000641067|OR10R2	MULTI-MSMS	A375_MHC_IP_R2	2	428.6864013671875	2	428.760561	855.506569	-0.25571	-0.00010964	1.3217	0.0005667	1.066	0.00045706	428.7611026003217	72.872	0.55808	73.607	73.278	73.836	0.73541					13	10	2	0	0	0	0.76683	1	27619	27619		15.768	0	1	883090	+		28448	22461	20265	20431	27891	27891					0.07303570528563341
LALRCMTL	8	Unmodified	_LALRCMTL_					0	0	0			REV__ENST00000375799.7_1_1:16054831-16055618:+|nuORF	REV__ENST00000375799.7_1_1:16054831-16055618:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	461.15643310546875	2	460.756441	919.498329	-0.60865	-0.00028044	1.2314	0.00056739	0.62279	0.00028695	460.75693664043575	97.387	0.66103	98.143	97.873	98.534	0.75586					23	12	3	0	0	0	0.60242	1	36972	36972		24.021	10.115	1	1923800	+		28449	24135	20266	20432	27892	27892					0.03535977015928893
LALRCMTL	8	Unmodified	_LALRCMTL_					0	0	0			REV__ENST00000375799.7_1_1:16054831-16055618:+|nuORF	REV__ENST00000375799.7_1_1:16054831-16055618:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	460.756441	919.498329	-0.19114	-8.8069E-05	1.0869	0.00050079	0.89575	0.00041272	460.7570067920382	98.195	0.60892	98.195	97.948	98.557	0	0.025659	-5.5384E-05	NaN	24.021	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1434400	+		28450	24135	20266	20432							0.03535977015928893
LALRILEWIYT	11	Unmodified	_LALRILEWIYT_					0	0	0			REV__ENST00000453914.1_1_20:34064461-34078690:-|nuORF	REV__ENST00000453914.1_1_20:34064461-34078690:-|nuORF	MSMS	A375_MHC_IP_R2	2	695.8560180664062	2	695.908288	1389.80202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.176	1	85.912	85.412	86.412	0.73601								0	0	0	0.16249	1	32380	32380		5.7319	0	1		+		28451	24533	20267	20433	27893	27893					0.1227135359656586
LALRNPVAKI	10	Unmodified	_LALRNPVAKI_					0	0	0			REV__ENST00000546023.1_1_6:160209518-160209776:-|nuORF	REV__ENST00000546023.1_1_6:160209518-160209776:-|nuORF	MSMS	A375_MHC_IP_R2	2	547.6683959960938	2	547.855858	1093.69716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.829	1	29.528	29.028	30.028	0.69872								0	0	0	0.15245	1	10007	10007		10.074	1.3285	1		+		28452	25997	20268	20434	27894	27894					0.15406276910653105
LALRTAAG	8	Unmodified	_LALRTAAG_					0	0	0		ENST00000308660.5_1_5:126253889-126366245:-|nuORF	ENST00000308660.5_1_5:126253889-126366245:-|nuORF	ENST00000308660.5_1_5:126253889-126366245:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	386.93267822265625	2	386.73742	771.460287	0.074755	2.8911E-05	0.73443	0.00028403	0.80919	0.00031294	386.73766867064336	39.567	0.55631	39.567	39.238	39.794	0					15	10	2	0	0	0	0.972	1	13627	13627		4.756	2.4533	1	2452600			28453	10603	20269	20435	27895	27895					0.06541550417125563
LALRTRLSM	9	Unmodified	_LALRTRLSM_					0	0	0			REV__ENSG00000074047|ENST00000361492|GLI2	REV__ENSG00000074047|ENST00000361492|GLI2	MULTI-SECPEP	A375_MHC_IP_R2	2	531.2200927734375	2	530.818418	1059.62228	-0.5684	-0.00030172	0.28199	0.00014969	-0.28642	-0.00015203	531.8195837464186	69.718	0.76149	70.452	69.981	70.743	0.73421					45	14	4	0	0	0	0.69504	1	26469	26469		18.135	10.846	1	3305300	+		28454	16629	20270	20436	27896	27896					0.09485771107756591
LALSAQLLQA	10	Unmodified	_LALSAQLLQA_					0	0	0		nc|ENSG00000187172|Q86Y30|BAGE2	nc|ENSG00000187172|Q86Y30|BAGE2	nc|ENSG00000187172|Q86Y30|BAGE2	MULTI-SECPEP	A375_MHC_IP_R2	2	514.22412109375	2	514.310949	1026.60735	-0.74885	-0.00038514	0.69489	0.00035739	-0.053955	-2.7749E-05	514.3114968112718	75.854	0.61115	76.594	76.232	76.843	0.74052					15	11	2	0	0	0	0.91556	1	28771	28771		6.2058	0	1	1271400			28455	14819	20271	20437	27897	27897					0.09510602511431898
LALSARDR	8	Unmodified	_LALSARDR_					0	0	0		nc|ENSG00000162105|Q9UPX8-4|SHANK2;nc|ENSG00000162105|Q9UPX8-1|SHANK2;ENSG00000162105|ENST00000601538|SHANK2	nc|ENSG00000162105|Q9UPX8-4|SHANK2	nc|ENSG00000162105|Q9UPX8-4|SHANK2	MSMS	A375_MHC_IP_R2	2	451.19140625	2	451.264333	900.514114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.98	1	130.2	129.7	130.7	0.2142								0	0	0	0.16876	1	51089	51089		28.173	1.832	1				28456	6508	20272	20438	27898	27898					0.05987722848840349
LALSHLNVFR	10	Unmodified	_LALSHLNVFR_					0	0	0			REV__ENSG00000165355|ENST00000298097|FBXO33	REV__ENSG00000165355|ENST00000298097|FBXO33	MULTI-MSMS	A375_MHC_IP_R1	1	390.5886535644531	3	390.564502	1168.67168	-0.2939	-0.00011479	-0.15296	-5.974E-05	-0.44686	-0.00017453	390.56460824980815	29.277	0.40775	29.277	28.945	29.353	0					12	7	2	0	0	0	0.71455	1	9042	9042		5.7834	0	1	5368700	+		28457	20575	20273	20439	27899	27899					0.09408802388225013
LALSLLIFLW	10	Unmodified	_LALSLLIFLW_					0	0	0			REV__nc|ENSG00000121933|P0DMS9|TMIGD3	REV__nc|ENSG00000121933|P0DMS9|TMIGD3	MSMS	A375_MHC_IP_R2	2	396.9519348144531	3	396.917882	1187.73182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.127	1	39.901	39.401	40.401	0.77451								0	0	0	0.15513	1	14432	14432		4.1895	0	1		+		28458	18179	20274	20440	27900	27900					0.14546099998733553
LALSRRLFF	9	Unmodified	_LALSRRLFF_					0	0	0			REV__ENST00000262461.6_1_5:127523892-127524048:+|nuORF	REV__ENST00000262461.6_1_5:127523892-127524048:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	562.2420654296875	2	561.842751	1121.67095	-0.44426	-0.0002496	-1.653	-0.00092872	-2.0973	-0.0011783	561.8420875192588	86.654	0.46021	87.387	87.151	87.612	0.733					17	8	3	0	0	0	0.73008	1	32963	32963		7.9102	0	1	2398100	+		28459	15384	20275	20441	27901	27901					0.11498007739169225
LALSSRKNL	9	Unmodified	_LALSSRKNL_					0	0	0		ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2;ENST00000586441.1_1_19:45867568-45872241:-|nuORF	ENSG00000104884|ENST00000391945|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	MULTI-SECPEP	A375_MHC_IP_R2	2	501.70867919921875	2	501.308741	1000.60293	-0.43509	-0.00021811	0.082796	4.1507E-05	-0.35229	-0.00017661	501.3086566013064	136.42	1.9439	136.53	136.35	138.29	0.11134					104	37	4	0	0	0	0.65246	1	53892	53892		21.747	0	1	70423000			28460	2549	20276	20442	27902	27902					0.10265138088516323
LALSSRKNL	9	Unmodified	_LALSSRKNL_					0	0	0		ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2;ENST00000586441.1_1_19:45867568-45872241:-|nuORF	ENSG00000104884|ENST00000391945|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	MULTI-MATCH	A375_MHC_IP_R1	1		2	501.308741	1000.60293	-0.67867	-0.00034022	0.31081	0.00015581	-0.36785	-0.00018441	501.3087859515328	136.51	2.0009	136.51	136.3	138.31	0	-0.0098367	0.00012356	NaN	21.747	89	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67285000			28461	2549	20276	20442							0.10265138088516323
LALTEGFSLCF	11	Unmodified	_LALTEGFSLCF_					0	0	0			REV__ENST00000306243.6_1_15:40764549-40764810:+|nuORF	REV__ENST00000306243.6_1_15:40764549-40764810:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	600.1954345703125	2	600.8021	1199.58965	-0.46046	-0.00027665	2.3707	0.0014243	1.9103	0.0011477	600.8029706033288	76.782	0.8148	76.782	76.471	77.286	0					20	15	2	0	0	0	0.98591	1	27916	27916		5.7319	0	1	1893600	+		28462	23467	20277	20443	27903	27903					-0.0021648080573868356
LALTRTLGL	9	Unmodified	_LALTRTLGL_					0	0	0			REV__ENST00000556550.1_1_14:24113620-24113809:+|nuORF	REV__ENST00000556550.1_1_14:24113620-24113809:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	478.68231201171875	2	479.30821	956.601866	-0.37306	-0.00017881	-0.76859	-0.00036839	-1.1417	-0.0005472	479.3079710655552	72.96	0.35401	72.96	72.728	73.082	0					9	6	2	0	0	0	0.75466	1	26465	26465		1.8442	0	1	529950	+		28463	17125	20278	20444	27904	27904					0.12182923719615246
LALVPNVTAAA	11	Unmodified	_LALVPNVTAAA_					0	0	0			REV__ANKRD35|p.P401L|1|0.33|ENSG00000198483|chr1:145873567-145873567|G/A|missense_variant	REV__ANKRD35|p.P401L|1|0.33|ENSG00000198483|chr1:145873567-145873567|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	520.710205078125	2	520.310949	1038.60735	-0.5193	-0.0002702	0.14851	7.7272E-05	-0.37078	-0.00019292	520.3109515309515	86.801	0.7625	87.534	87.203	87.966	0.733					36	14	3	0	0	0	0.63737	1	32997	32997		20.415	0	1	11063000	+		28464	15410	20279	20445	27905	27905					0.08958602511415847
LALVSDNTV	9	Unmodified	_LALVSDNTV_					0	0	0		CON__P07224	CON__P07224	CON__P07224	MULTI-MSMS	A375_MHC_IP_R2	2	466.6895446777344	2	466.258382	930.502212	-0.56428	-0.0002631	0.3299	0.00015382	-0.23438	-0.00010928	466.25858434309544	87.627	0.91071	88.358	88.116	89.026	0.7318					21	17	2	0	0	0	0.46038	1	33279	33279		21.747	4.8044	1	2189700		+	28465	592	20280	20446	27906	27906					0.03418061315005616
LALVSKDW	8	Unmodified	_LALVSKDW_					0	0	0		ENSG00000092096|ENST00000354772|SLC22A17;nc|ENSG00000092096|Q8WUG5|SLC22A17	ENSG00000092096|ENST00000354772|SLC22A17	ENSG00000092096|ENST00000354772|SLC22A17	MULTI-SECPEP	A375_MHC_IP_R1	1	465.6217956542969	2	466.26601	930.517468	-0.22434	-0.0001046	-0.90106	-0.00042013	-1.1254	-0.00052474	466.26556726652814	57.43	0.45875	57.43	57.159	57.618	0					11	8	2	0	0	0	0.88799	1	20508	20508		9.3474	4.1168	1	1088200			28466	1993	20281	20447	27907	27907					0.04942972902847487
LALWTASTKD	10	Unmodified	_LALWTASTKD_					0	0	0			REV__nc|ENSG00000163399|P05023-2|ATP1A1	REV__nc|ENSG00000163399|P05023-2|ATP1A1	MULTI-SECPEP	A375_MHC_IP_R1	1	553.1693115234375	2	553.298039	1104.58152	-0.51379	-0.00028428	0.61841	0.00034217	0.10462	5.7888E-05	553.2987193535378	81.667	0.55634	81.667	81.303	81.86	0					16	10	2	0	0	0	0.78945	1	29758	29758		13.906	0	1	1503700	+		28467	20360	20282	20448	27908	27908					0.033417082691585165
LALYVYTIFS	10	Unmodified	_LALYVYTIFS_					0	0	0			REV__ENSG00000196131|ENST00000341702|VN1R2	REV__ENSG00000196131|ENST00000341702|VN1R2	MULTI-SECPEP	A375_MHC_IP_R1	1	397.2802429199219	3	397.221631	1188.64306	-0.20387	-8.0982E-05	0.83625	0.00033218	0.63238	0.0002512	397.22186398251097	37.819	0.2028	37.819	37.71	37.913	0					5	3	2	0	0	0	0.91556	1	12808	12808		5.7834	0	1	1029800	+		28468	22161	20283	20449	27909	27909					0.05628639968426796
LAMDPYSCALT	11	Unmodified	_LAMDPYSCALT_					0	0	0		nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;ENSG00000160111|ENST00000443236|CPAMD8	nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	MULTI-MSMS	A375_MHC_IP_R1	1	593.2446899414062	2	592.769942	1183.52533	-0.29878	-0.00017711	0.40585	0.00024058	0.10707	6.3469E-05	592.7700411034734	54.673	0.6097	54.673	54.415	55.025	0					20	11	2	0	0	0	0.73016	1	19437	19437		8.7454	0.83525	1	5792900			28469	6397	20284	20450	27910	27910					-0.05909003954207037
LAMEGQQL	8	Unmodified	_LAMEGQQL_					0	0	0		ENSG00000145817|ENST00000274496|YIPF5;nc|ENSG00000145817|Q969M3-3|YIPF5;nc|ENSG00000145817|Q969M3-2|YIPF5	ENSG00000145817|ENST00000274496|YIPF5	ENSG00000145817|ENST00000274496|YIPF5	MSMS	A375_MHC_IP_R2	2	445.16839599609375	2	445.226028	888.437503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.082	1	67.818	67.318	68.318	0.73631								0	0	0	0.16876	1	25413	25413		9.3474	0	1				28470	5584	20285	20451	27911	27911					-0.011178367626371255
LAMLHITKKPV	11	Unmodified	_LAMLHITKKPV_					0	0	0			REV__TLR10|p.E461K|1|0.49|ENSG00000174123|chr4:38774210-38774210|C/T|missense_variant	REV__TLR10|p.E461K|1|0.49|ENSG00000174123|chr4:38774210-38774210|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	626.1788330078125	2	625.886301	1249.75805	-0.40903	-0.00025601	0.0048316	3.024E-06	-0.4042	-0.00025298	626.387568268665	82.56	0.25408	82.56	82.418	82.672	0					7	4	2	0	0	0	0.99526	1	30151	30151		3.5965	0	1	823440	+		28471	28120	20286	20452	27912	27912					0.1431604589856761
LAMWRLCF	8	Unmodified	_LAMWRLCF_					0	0	0			REV__nc|ENSG00000198369|Q7Z698-2|SPRED2	REV__nc|ENSG00000198369|Q7Z698-2|SPRED2	MULTI-SECPEP	A375_MHC_IP_R2	2	520.7105102539062	2	520.264433	1038.51431	-0.83999	-0.00043702	-2.4176	-0.0012578	-3.2576	-0.0016948	520.2628872337033	65.685	0.45737	66.423	66.222	66.68	0.73811					10	8	2	0	0	0	0.96296	1	24863	24863		2.5775	0	1	475690	+		28472	22366	20287	20453	27913	27913					-0.003403167471560664
LAMYKAMA	8	Unmodified	_LAMYKAMA_					0	0	0			REV__ENSG00000145555|ENST00000513610|MYO10	REV__ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	A375_MHC_IP_R1	1	450.1712646484375	2	449.729892	897.445231	-0.5817	-0.00026161	1.9551	0.00087928	1.3734	0.00061767	449.73035019120977	29.457	0.25304	29.457	29.302	29.555	0					6	4	2	0	0	0	0.76683	1	9199	9199		15.768	1.1865	1	3777300	+		28473	19480	20288	20454	27914	27914					-0.007594007667307778
LANCLDMQD	9	Unmodified	_LANCLDMQD_					0	0	0		ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1171875	2	511.71771	1021.42087	-1.0063	-0.00051493	-0.20987	-0.00010739	-1.2162	-0.00062233	511.7176714419484	49.313	0.3531	50.071	49.894	50.247	0.75737					9	6	2	0	0	0	0.71541	1	18557	18557		16.942	0	1	2016100			28474	6530	20289	20455	27915	27915					-0.08898705710907961
LANEEVSWR	9	Unmodified	_LANEEVSWR_					0	0	0		ENST00000586117.5_1_19:5941823-5978093:-|nuORF	ENST00000586117.5_1_19:5941823-5978093:-|nuORF	ENST00000586117.5_1_19:5941823-5978093:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	552.677001953125	2	552.277638	1102.54072	-0.71263	-0.00039357	-0.51512	-0.00028449	-1.2277	-0.00067806	552.2771130514914	63.711	1.0174	64.451	63.987	65.004	0.74022					39	19	3	0	0	0	0.29123	1	24346	24346		31.268	1.4278	1	2871500			28475	13724	20290	20456	27916	27916					-0.0064463305047866015
LANEKVITV	9	Unmodified	_LANEKVITV_					0	0	0		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-SECPEP	A375_MHC_IP_R1	1	494.1791076660156	2	493.797675	985.580796	-0.27894	-0.00013774	-1.21	-0.00059749	-1.4889	-0.00073523	493.79761024994446	43.568	0.6619	43.568	43.197	43.859	0					21	12	2	0	0	0	0.4261	1	15219	15219		30.637	19.142	1	2412800			28476	8010	20291	20457	27917	27917					0.08742913620096715
LANGEVRIY	9	Unmodified	_LANGEVRIY_					0	0	0		ENST00000529955.5_1_11:66281964-66299243:+|nuORF;ENSG00000174483|ENST00000318312|BBS1;nc|ENSG00000174483|Q8NFJ9-2|BBS1;ENST00000527959.1_1_11:66290957-66294394:+|nuORF	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	518.184814453125	2	517.785099	1033.55564	-0.56389	-0.00029197	-1.3833	-0.00071627	-1.9472	-0.0010082	517.7840712029008	47.501	1.6751	48.262	47.258	48.933	0.76127					53	32	4	0	0	0	0.074405	1	17768	17768		61.602	30.334	1	16431000			28477	7886	20292	20458	27918	27918					0.04020858817534645
LANGSILVY	9	Unmodified	_LANGSILVY_					0	0	0		ENSG00000168411|ENST00000361070|RFWD3	ENSG00000168411|ENST00000361070|RFWD3	ENSG00000168411|ENST00000361070|RFWD3	MULTI-SECPEP	A375_MHC_IP_R1	1	949.860595703125	1	949.535309	948.528032	0.2757	0.00026178	-0.35472	-0.00033682	-0.079023	-7.5036E-05	949.5350355957308	92.846	0.40563	92.846	92.617	93.023	0					12	7	2	0	0	0	0.087712	1	34102	34102		75.761	10.526	1	3162200			28478	7298	20293	20459	27919	27919					0.05170955557275647
LANILSYM	8	Unmodified	_LANILSYM_					0	0	0			REV__nc|ENSG00000100578|Q9BVV6-2|KIAA0586	REV__nc|ENSG00000100578|Q9BVV6-2|KIAA0586	MSMS	A375_MHC_IP_R2	2	462.6815490722656	2	462.746596	923.478639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.71	1	106.47	105.97	106.97	0.75977								0	0	0	0.16876	1	39974	39974		30.225	0	1		+		28479	17103	20294	20460	27920	27920					0.013839242768312943
LANIQEVSI	9	Unmodified	_LANIQEVSI_					0	0	0		ENSG00000082212|ENST00000321341|ME2	ENSG00000082212|ENST00000321341|ME2	ENSG00000082212|ENST00000321341|ME2	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1503601074219	2	493.779482	985.544411	-0.49543	-0.00024463	-1.2233	-0.00060405	-1.7187	-0.00084868	493.7790818888635	44.495	0.55748	45.265	44.833	45.39	0.7691					15	10	2	0	0	0	0.62767	1	16473	16473		16.942	0	1	1013400			28480	1755	20295	20461	27921	27921					0.05106036723384477
LANKLLSRV	9	Unmodified	_LANKLLSRV_					0	0	0			REV__ENST00000468090.5_1_21:45177297-45177525:+|nuORF	REV__ENST00000468090.5_1_21:45177297-45177525:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.9803161621094	2	507.326934	1012.63931	-0.42526	-0.00021575	1.3515	0.00068567	0.92627	0.00046992	507.3268846529041	50.357	0.25502	50.357	50.153	50.408	0					5	4	2	0	0	0	0.74412	1	17770	17770		6.2058	0.9089	1	476540	+		28481	25075	20296	20462	27922	27922					0.13350014985246617
LANMSFLEI	9	Unmodified	_LANMSFLEI_					0	0	0		ENSG00000184933|ENST00000641196|OR6A2	ENSG00000184933|ENST00000641196|OR6A2	ENSG00000184933|ENST00000641196|OR6A2	MULTI-SECPEP	A375_MHC_IP_R2	2	519.9855346679688	2	519.270435	1036.52632	-0.58153	-0.00030197	-4.1935	-0.0021776	-4.775	-0.0024795	519.2663210208688	69.222	0.30305	69.957	69.83	70.133	0.73511					6	5	2	0	0	0	0.69507	1	26234	26234		19.257	12.534	1	841340			28482	8620	20297	20463	27923	27923					0.009515784770201208
LANNEKKKPS	10	Unmodified	_LANNEKKKPS_					0	0	0			REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	MULTI-SECPEP	A375_MHC_IP_R1	1	564.13916015625	2	564.822212	1127.62987	-0.39023	-0.00022041	0.57831	0.00032664	0.18808	0.00010623	565.3227078165543	33.549	0.45756	33.549	33.19	33.648	0					12	8	2	0	0	0	0.9269	1	10864	10864		6.7232	0.99131	1	2074600	+		28483	18275	20298	20464	27924	27924					0.07116201909047959
LANNEKKKPS	10	Unmodified	_LANNEKKKPS_					0	0	0			REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	MULTI-MATCH	A375_MHC_IP_R2	2		2	564.822212	1127.62987	-0.52225	-0.00029498	2.7655	0.001562	2.2432	0.001267	564.8238801046348	32.567	0.25519	33.304	33.162	33.417	0.73692	-0.12267	0.00043398	NaN	3.5965	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2317300	+		28484	18275	20298	20464							0.07116201909047959
LANPLKKQV	9	Unmodified	_LANPLKKQV_					0	0	0		nc|ENSG00000125447|Q9NZ52-3|GGA3	nc|ENSG00000125447|Q9NZ52-3|GGA3	nc|ENSG00000125447|Q9NZ52-3|GGA3	MULTI-MSMS	A375_MHC_IP_R1	1	507.44305419921875	2	505.821484	1009.62842	0.0039558	2.0009E-06	-0.24616	-0.00012451	-0.2422	-0.00012251	505.82127835889133	49.467	0.81441	49.467	49.184	49.998	0					36	15	4	0	0	0	0.6898	1	17587	17587		7.9102	3.1541	1	9841100			28485	14579	20299	20465	27925	27925					0.12398612610934379
LANSHLPSEV	10	Unmodified	_LANSHLPSEV_					0	0	0		PNPLA6-ATP13A1|1|fusion;PNPLA6-ATP13A1|3|fusion;PNPLA6-ATP13A1|2|fusion;nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	PNPLA6-ATP13A1|1|fusion	PNPLA6-ATP13A1|1|fusion	MULTI-SECPEP	A375_MHC_IP_R2	2	534.179443359375	2	533.780013	1065.54547	-0.78997	-0.00042167	0.53294	0.00028447	-0.25703	-0.0001372	533.7803453588239	31.231	0.46058	31.949	31.719	32.18	0.71857					13	8	2	0	0	0	0.51493	1	11066	11066		38.176	1.6694	1	3551000			28486	1117	20300	20466	27926	27926					0.015322510922715082
LANWTFTV	8	Unmodified	_LANWTFTV_					0	0	0			REV__ENSG00000144820|ENST00000273352|ADGRG7	REV__ENSG00000144820|ENST00000273352|ADGRG7	MSMS	A375_MHC_IP_R2	2	476.5984802246094	2	476.25036	950.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.802	1	70.536	70.036	71.036	0.73421								0	0	0	0.16876	1	26459	26459		19.439	0	1		+		28487	19447	20301	20467	27927	27927					0.008943998687641397
LAPAKSPV	8	Unmodified	_LAPAKSPV_					0	0	0		ENSG00000205108|ENST00000378788|FAM205A	ENSG00000205108|ENST00000378788|FAM205A	ENSG00000205108|ENST00000378788|FAM205A	MULTI-SECPEP	A375_MHC_IP_R1	1	392.1478271484375	2	391.742171	781.469789	-0.0016112	-6.3116E-07	0.18731	7.3376E-05	0.1857	7.2745E-05	391.7422264983995	32.308	0.46045	32.308	32.024	32.485	0					13	8	2	0	0	0	0.97021	1	10333	10333		10.824	1.4765	1	1957100			28488	9497	20302	20468	27928	27928					0.07031318702661338
LAPAPLASV	9	Unmodified	_LAPAPLASV_					0	0	0		ENSG00000130940|ENST00000377022|CASZ1;ENST00000492173.1_1_1:10718563-10720675:-|nuORF;ENST00000496432.6_1_1:10713095-10754402:-|nuORF;nc|ENSG00000130940|Q86V15-2|CASZ1	ENSG00000130940|ENST00000377022|CASZ1	ENSG00000130940|ENST00000377022|CASZ1	MULTI-SECPEP	A375_MHC_IP_R1	1	420.1552734375	2	419.755278	837.496004	-0.15836	-6.6473E-05	-0.26726	-0.00011218	-0.42562	-0.00017866	419.75520792438033	36.527	0.40717	36.527	36.287	36.695	0					12	7	2	0	0	0	0.73363	1	12265	12265		10.824	6.4947	1	2140900			28489	4295	20303	20469	27929	27929					0.07075587874123812
LAPDASLYI	9	Unmodified	_LAPDASLYI_					0	0	0		nc|ENSG00000241635|P22309-2|UGT1A1;ENSG00000241635|ENST00000305208|UGT1A1	nc|ENSG00000241635|P22309-2|UGT1A1	nc|ENSG00000241635|P22309-2|UGT1A1	MULTI-MSMS	A375_MHC_IP_R2	2	483.1762390136719	2	481.7633	961.512048	-0.6462	-0.00031132	-0.059215	-2.8528E-05	-0.70542	-0.00033985	481.76319583517505	106.96	1.3721	107.72	107.14	108.51	0.75977					68	26	4	0	0	0	0.5339	1	40352	40352		18.135	0	1	13779000			28490	9785	20304	20470	27930	27930					0.029752493203545782
LAPDGSTVAV	10	Unmodified	_LAPDGSTVAV_					0	0	0		CON__ENSEMBL:ENSBTAP00000016285;ENSG00000161031|ENST00000340880|PGLYRP2;nc|ENSG00000161031|Q96PD5-2|PGLYRP2	CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	MULTI-MSMS	A375_MHC_IP_R2	2	465.7847900390625	2	465.250557	928.486562	-0.56059	-0.00026082	-0.55724	-0.00025926	-1.1178	-0.00052007	465.2504328504765	79.662	0.71194	80.407	80.047	80.759	0.74473					25	13	3	0	0	0	0.65248	1	30320	30320		16.942	0	1	2916700		+	28491	570	20305	20471	27931	27931					0.019457747979458873
LAPDLVGLL	9	Unmodified	_LAPDLVGLL_					0	0	0		ENST00000405486.5_2_22:41641775-41642279:-|nuORF	ENST00000405486.5_2_22:41641775-41642279:-|nuORF	ENST00000405486.5_2_22:41641775-41642279:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	455.4957580566406	2	455.784036	909.553519	-0.30771	-0.00014025	0.14719	6.7086E-05	-0.16052	-7.3163E-05	455.78401654039243	83.653	0.66051	83.653	83.226	83.887	0					15	12	2	0	0	0	0.69504	1	30644	30644		18.135	9.5417	1	1018400			28492	11590	20306	20472	27932	27932					0.09512430079723799
LAPDTFDD	8	Unmodified	_LAPDTFDD_					0	0	0		ART5|p.T38N|1|0.41|ENSG00000167311|chr11:3640316-3640316|G/T|missense_variant;nc|ENSG00000167311|Q96L15-2|ART5;ENSG00000167311|ENST00000397068|ART5	ART5|p.T38N|1|0.41|ENSG00000167311|chr11:3640316-3640316|G/T|missense_variant	ART5|p.T38N|1|0.41|ENSG00000167311|chr11:3640316-3640316|G/T|missense_variant	MSMS	A375_MHC_IP_R2	2	447.1784973144531	2	447.19799	892.381428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.28	1	109.04	108.54	109.54	0.75436								0	0	0	0.16876	1	40891	40891		2.8892	0	1				28493	186	20307	20473	27933	27933					-0.06906766398481068
LAPGALTL	8	Unmodified	_LAPGALTL_					0	0	0		ENSG00000169992|ENST00000302926|NLGN2	ENSG00000169992|ENST00000302926|NLGN2	ENSG00000169992|ENST00000302926|NLGN2	MULTI-SECPEP	A375_MHC_IP_R1	1	377.4422302246094	2	378.236722	754.45889	0.21151	8.0001E-05	0.32629	0.00012341	0.5378	0.00020342	378.23666619221393	37.887	0.20279	37.887	37.761	37.964	0					5	3	2	0	0	0	0.972	1	12811	12811		6.3541	0	1	560480			28494	7462	20308	20474	27934	27934					0.07183916328381201
LAPGLPADL	9	Unmodified	_LAPGLPADL_					0	0	0			REV__ENSG00000127528|ENST00000248071|KLF2	REV__ENSG00000127528|ENST00000248071|KLF2	MULTI-SECPEP	A375_MHC_IP_R2	2	434.15264892578125	2	433.752736	865.490919	-0.2491	-0.00010805	-0.15413	-6.6855E-05	-0.40324	-0.0001749	433.7526438111404	75.721	0.40833	76.462	76.282	76.691	0.74052					13	7	2	0	0	0	0.23974	1	28756	28756		49.669	9.2203	1	2324200	+		28495	18425	20309	20475	27935	27935					0.05279284011510299
LAPGNRPL	8	Unmodified	_LAPGNRPL_					0	0	0		ENSG00000162746|ENST00000367948|FCRLB;ENST00000495397.1_1_1:161696362-161697449:+|nuORF	ENSG00000162746|ENST00000367948|FCRLB;ENST00000495397.1_1_1:161696362-161697449:+|nuORF	ENSG00000162746|ENST00000367948|FCRLB	MULTI-SECPEP	A375_MHC_IP_R1	1	419.650634765625	2	419.250695	836.486836	0.064209	2.692E-05	-0.073723	-3.0908E-05	-0.0095136	-3.9886E-06	419.25058395198096	34.482	0.55693	34.482	34.253	34.81	0					21	10	3	0	0	0	0.69059	1	11358	11358		38.151	4.0487	1	9628400			28496	6588;12707	20310	20476	27936	27936					0.06205239308462751
LAPGPPVVG	9	Unmodified	_LAPGPPVVG_					0	0	0			REV__ENST00000416152.5_2_3:195590478-195590787:-|nuORF	REV__ENST00000416152.5_2_3:195590478-195590787:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	404.1419677734375	2	403.742171	805.469789	0.016899	6.8227E-06	0.23486	9.4824E-05	0.25176	0.00010165	403.7420774652102	76.824	0.65546	77.566	77.251	77.907	0.74225					25	12	4	0	0	0	0.14801	1	29169	29169		56.048	10.298	1	2474800	+		28497	24531	20311	20477	27937	27937					0.05927318702663342
LAPGWVLAATH	11	Unmodified	_LAPGWVLAATH_					0	0	0		nc|ENSG00000178226|Q5K4E3-2|PRSS36;nc|ENSG00000178226|Q5K4E3-3|PRSS36;ENSG00000178226|ENST00000268281|PRSS36	nc|ENSG00000178226|Q5K4E3-2|PRSS36	nc|ENSG00000178226|Q5K4E3-2|PRSS36	MULTI-MSMS	A375_MHC_IP_R2	2	568.7149658203125	2	568.316566	1134.61858	-0.18632	-0.00010589	-0.86506	-0.00049163	-1.0514	-0.00059752	568.8179355262963	110.75	0.91694	111.49	110.99	111.9	0.73692					32	17	3	0	0	0	0.65228	1	41714	41714		19.257	0	1	4854500			28498	8146	20312	20478	27938	27938					0.05665424605535918
LAPHLHGPD	9	Unmodified	_LAPHLHGPD_					0	0	0		ENST00000432205.5_1_12:6982003-6982834:-|nuORF;ENST00000523102.5_1_12:6982003-6982426:-|nuORF	ENST00000432205.5_1_12:6982003-6982834:-|nuORF	ENST00000432205.5_1_12:6982003-6982834:-|nuORF	MSMS	A375_MHC_IP_R2	2	478.6470642089844	2	478.751059	955.487565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.912	1	92.65	92.15	93.15	0.73825								0	0	0	0.15131	1	34955	34955		19.439	2.3524	1				28499	11874	20313	20479	27939	27939					0.008040339575245525
LAPHLHGPD	9	Unmodified	_LAPHLHGPD_					0	0	0		ENST00000432205.5_1_12:6982003-6982834:-|nuORF;ENST00000523102.5_1_12:6982003-6982426:-|nuORF	ENST00000432205.5_1_12:6982003-6982834:-|nuORF	ENST00000432205.5_1_12:6982003-6982834:-|nuORF	MSMS	A375_MHC_IP_R2	2	478.7009582519531	2	478.751059	955.487565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.007	1	92.746	92.246	93.246	0.73902								0	0	0	0.15131	1	34992	34992		19.439	1.304	1				28500	11874	20313	20479	27940	27940					0.008040339575245525
LAPKSSLSF	9	Unmodified	_LAPKSSLSF_					0	0	0			REV__ENST00000317995.4_1_8:61102445-61121314:-|nuORF	REV__ENST00000317995.4_1_8:61102445-61121314:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	475.17919921875	2	475.271293	948.528032	-0.13245	-6.295E-05	0.096911	4.6059E-05	-0.03554	-1.6891E-05	475.27129008020944	69.198	0.96325	69.198	68.819	69.782	0					42	18	3	0	0	0	0.10411	1	25213	25213		49.933	2.3386	1	24800000	+		28501	23548	20314	20480	27941	27941					0.05170955557287016
LAPLLRPLSF	10	Unmodified	_LAPLLRPLSF_					0	0	0			REV__ENST00000565695.2_1_6:101329383-101329548:+|nuORF	REV__ENST00000565695.2_1_6:101329383-101329548:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	376.9408264160156	3	376.237615	1125.69102	0.20363	7.6613E-05	3.6254	0.001364	3.829	0.0014406	376.23986006361883	30.968	1.1652	31.687	30.962	32.128	0.71857					61	22	5	0	0	0	0.71946	1	11100	11100		3.5871	0.85186	1	19000000	+		28502	26231	20315	20481	27942	27942					0.13319758679131155
LAPMKTATT	9	Unmodified	_LAPMKTATT_					0	0	0			REV__nc|ENSG00000120697|Q9Y673-2|ALG5	REV__nc|ENSG00000120697|Q9Y673-2|ALG5	MULTI-SECPEP	A375_MHC_IP_R2	2	467.6004638671875	2	467.257328	932.500103	-1.1421	-0.00053366	-0.45557	-0.00021287	-1.5977	-0.00074653	467.2570029217366	33.723	0.55599	34.475	34.247	34.803	0.75225					17	10	2	0	0	0	0.73363	1	12185	12185		6.7232	0	1	2319900	+		28503	18131	20316	20482	27943	27943					0.031153093055309
LAPMWTDL	8	Unmodified	_LAPMWTDL_					0	0	0		ENST00000530286.5_1_11:34643613-34643706:+|nuORF	ENST00000530286.5_1_11:34643613-34643706:+|nuORF	ENST00000530286.5_1_11:34643613-34643706:+|nuORF	MSMS	A375_MHC_IP_R2	2	473.6934814453125	2	473.738771	945.462989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.4	1	101.16	100.66	101.66	0.76278								0	0	0	0.16876	1	38071	38071		14.582	0	1				28504	13148	20317	20483	27944	27944					-0.011923622402150613
LAPPGHPLLS	10	Unmodified	_LAPPGHPLLS_					0	0	0		ENST00000478068.1_1_2:71215732-71216282:-|nuORF	ENST00000478068.1_1_2:71215732-71216282:-|nuORF	ENST00000478068.1_1_2:71215732-71216282:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	501.1452331542969	2	501.292559	1000.57057	-0.94621	-0.00047433	-0.022339	-1.1199E-05	-0.96855	-0.00048553	501.2923340813093	58.676	0.40559	59.424	59.186	59.592	0.74858					9	7	2	0	0	0	0.85226	1	22173	22173		3.2813	0	1	791300			28505	12456	20318	20484	27945	27945					0.07030350685522535
LAPPPPTSA	9	Unmodified	_LAPPPPTSA_					0	0	0		nc|ENSG00000171475|Q8TF74-2|WIPF2;ENSG00000171475|ENST00000323571|WIPF2;ENST00000494757.5_1_17:38375603-38434474:+|nuORF	nc|ENSG00000171475|Q8TF74-2|WIPF2	nc|ENSG00000171475|Q8TF74-2|WIPF2	MULTI-MSMS	A375_MHC_IP_R1	1	426.4304504394531	2	425.737086	849.459619	-0.37979	-0.00016169	0.70031	0.00029815	0.32051	0.00013645	425.7373227090885	38.331	0.61259	38.331	38.016	38.628	0					19	11	2	0	0	0	0.1978	1	12931	12931		38.151	2.107	1	4533200			28506	7604	20319	20485	27946	27946					0.02886710977418261
LAPPPPTSA	9	Unmodified	_LAPPPPTSA_					0	0	0		nc|ENSG00000171475|Q8TF74-2|WIPF2;ENSG00000171475|ENST00000323571|WIPF2;ENST00000494757.5_1_17:38375603-38434474:+|nuORF	nc|ENSG00000171475|Q8TF74-2|WIPF2	nc|ENSG00000171475|Q8TF74-2|WIPF2	MULTI-MSMS	A375_MHC_IP_R2	2	426.1369323730469	2	425.737086	849.459619	-0.4018	-0.00017106	0.1628	6.9312E-05	-0.239	-0.00010175	425.7370902248048	37.683	1.025	38.457	38.124	39.149	0.77451					35	19	2	0	0	0	0.0094266	1	13779	13779		97.075	32.838	1	6466000			28507	7604	20319	20485	27947	27947					0.02886710977418261
LAPPPRAPL	9	Unmodified	_LAPPPRAPL_					0	0	0			REV__ENSG00000130338|ENST00000367097|TULP4	REV__ENSG00000130338|ENST00000367097|TULP4	MULTI-SECPEP	A375_MHC_IP_R2	2	466.6891784667969	2	466.28982	930.565087	-0.76976	-0.00035893	0.14634	6.8236E-05	-0.62342	-0.0002907	466.2898132660636	55.204	0.56019	55.955	55.626	56.187	0.75075					20	10	3	0	0	0	0.40041	1	20821	20821		16.942	0	1	4348500	+		28508	18533	20320	20486	27948	27948					0.09702671893705883
LAPQHASLLL	10	Unmodified	_LAPQHASLLL_					0	0	0			REV__ENST00000419155.5_1_9:123619076-123619268:-|nuORF	REV__ENST00000419155.5_1_9:123619076-123619268:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	532.21875	2	531.818941	1061.62333	-0.5577	-0.00029659	1.2385	0.00065866	0.68081	0.00036207	531.8195297911749	70.735	0.71679	70.735	70.237	70.953	0					13	7	2	0	0	0	0.6774	1	25690	25690		27.629	4.4804	1	2177500	+		28509	24564	20321	20487	27949	27949					0.09498308748334239
LAPRLPQTV	9	Unmodified	_LAPRLPQTV_					0	0	0		ENST00000569596.1_1_15:76054690-76055458:+|nuORF	ENST00000569596.1_1_15:76054690-76055458:+|nuORF	ENST00000569596.1_1_15:76054690-76055458:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	497.2016296386719	2	497.805834	993.597115	0.076859	3.8261E-05	-0.69938	-0.00034815	-0.62252	-0.00030989	497.80564492518096	69.668	0.45494	69.668	69.427	69.882	0					12	8	2	0	0	0	0.46045	1	25309	25309		22.736	0	1	1065000			28510	13592	20322	20488	27950	27950					0.1000603957684234
LAPSRQTKRPS	11	Unmodified	_LAPSRQTKRPS_					0	0	0		ENST00000569105.5_1_11:69468929-69488043:-|nuORF	ENST00000569105.5_1_11:69468929-69488043:-|nuORF	ENST00000569105.5_1_11:69468929-69488043:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	414.291259765625	3	414.242199	1239.70477	0.24937	0.0001033	-0.48784	-0.00020208	-0.23847	-9.8783E-05	414.24195371452873	32.133	0.46321	32.133	31.87	32.333	0					13	8	2	0	0	0	0.72869	1	10277	10277		5.5233	0	1	2534400			28511	13588	20323	20489	27951	27951					0.09450384440287962
LAPSSAGTGL	10	Unmodified	_LAPSSAGTGL_					0	0	0		ENST00000483155.5_1_9:79007484-79008822:-|nuORF	ENST00000483155.5_1_9:79007484-79008822:-|nuORF	ENST00000483155.5_1_9:79007484-79008822:-|nuORF	MSMS	A375_MHC_IP_R2	2	437.1636657714844	2	437.23745	872.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.735	1	66.473	65.973	66.973	0.73811								0	0	0	0.15105	1	24922	24922		15.847	2.3393	1				28512	12538	20324	20490	27952	27952					0.019015056264720442
LAPTILVPGI	10	Unmodified	_LAPTILVPGI_					0	0	0		ENST00000409291.5_1_15:44092113-44092284:+|nuORF	ENST00000409291.5_1_15:44092113-44092284:+|nuORF	ENST00000409291.5_1_15:44092113-44092284:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	496.7004089355469	2	497.320786	992.627018	-0.48652	-0.00024196	0.044586	2.2174E-05	-0.44193	-0.00021978	497.32050149705697	95.338	0.40709	95.338	95.058	95.465	0					10	7	2	0	0	0	0.89109	1	35080	35080		7.2892	0	1	1771900			28513	11629	20325	20491	27953	27953					0.13040978522201385
LAQAQQQFL	9	Unmodified	_LAQAQQQFL_					0	0	0			REV__ENSG00000149548|ENST00000344762|CCDC15	REV__ENSG00000149548|ENST00000344762|CCDC15	MULTI-SECPEP	A375_MHC_IP_R1	1	523.6693725585938	2	523.785099	1045.55564	-0.41468	-0.0002172	0.56463	0.00029575	0.14995	7.8542E-05	523.7853902407121	93.576	0.61195	93.576	93.228	93.84	0					17	11	2	0	0	0	0.69504	1	34306	34306		7.9102	0	1	1015700	+		28514	19688	20326	20492	27954	27954					0.03468858817518594
LAQAREAKL	9	Unmodified	_LAQAREAKL_					0	0	0			REV__ENST00000495155.5_1_17:19186396-19216987:+|nuORF	REV__ENST00000495155.5_1_17:19186396-19216987:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	500.70050048828125	2	500.300916	998.587279	-0.97743	-0.00048901	0.1543	7.7196E-05	-0.82314	-0.00041182	500.30081316554	26.272	0.45619	26.932	26.653	27.109	0.65992					10	8	2	0	0	0	0.67539	1	8902	8902		16.149	16.149	1	3094300	+		28515	16598	20327	20493	27955	27955					0.08792851571456595
LAQFGIHLQA	10	Unmodified	_LAQFGIHLQA_					0	0	0			REV__nc|ENSG00000130985|P22314-2|UBA1	REV__nc|ENSG00000130985|P22314-2|UBA1	MULTI-SECPEP	A375_MHC_IP_R1	1	548.6817626953125	2	549.308741	1096.60293	-0.92808	-0.0005098	0.91487	0.00050255	-0.013204	-7.2533E-06	549.8107219263179	38.193	0.30404	38.193	38.067	38.371	0					8	5	2	0	0	0	0.85226	1	12982	12982		20.454	4.6064	1	2845200	+		28516	18577	20328	20494	27956	27956					0.05849138088547079
LAQFGIHLQA	10	Unmodified	_LAQFGIHLQA_					0	0	0			REV__nc|ENSG00000130985|P22314-2|UBA1	REV__nc|ENSG00000130985|P22314-2|UBA1	MULTI-MATCH	A375_MHC_IP_R2	2		2	549.308741	1096.60293	-1.2986	-0.00071333	0.52104	0.00028621	-0.77756	-0.00042712	549.3090119464334	37.255	0.30474	38.025	37.867	38.171	0.7709	-0.083935	-0.00023734	NaN	20.454	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1129600	+		28517	18577	20328	20494							0.05849138088547079
LAQGRYLGAL	10	Unmodified	_LAQGRYLGAL_					0	0	0			REV__ENSG00000160867|ENST00000292408|FGFR4	REV__ENSG00000160867|ENST00000292408|FGFR4	MULTI-SECPEP	A375_MHC_IP_R1	1	531.7086181640625	2	531.308741	1060.60293	-0.61517	-0.00032685	-0.33892	-0.00018007	-0.95409	-0.00050692	531.3084285563044	46.351	0.60486	46.351	46.094	46.699	0					24	11	3	0	0	0	0.32951	1	16242	16242		30.637	0	1	3651600	+		28518	20187	20329	20495	27957	27957					0.07505138088527019
LAQILGKW	8	Unmodified	_LAQILGKW_					0	0	0			REV__ENSG00000197798|ENST00000533050|FAM118B	REV__ENSG00000197798|ENST00000533050|FAM118B	MULTI-SECPEP	A375_MHC_IP_R1	1	465.1578674316406	2	464.78437	927.554188	-0.52931	-0.00024601	0.27381	0.00012726	-0.2555	-0.00011875	464.7845590664415	41.256	0.40617	41.256	41.013	41.419	0					11	7	2	0	0	0	0.97144	1	14291	14291		5.2307	0	1	1078900	+		28519	22316	20330	20496	27958	27958					0.08751269519427751
LAQINERSWTH	11	Unmodified	_LAQINERSWTH_					0	0	0			REV__nc|ENSG00000143493|Q9NVH2-4|INTS7	REV__nc|ENSG00000143493|Q9NVH2-4|INTS7	MULTI-SECPEP	A375_MHC_IP_R1	1	452.1399841308594	3	452.233592	1353.67895	-0.39436	-0.00017834	-0.56635	-0.00025612	-0.96071	-0.00043446	452.5675549753088	32.811	0.35469	32.811	32.634	32.989	0					8	6	2	0	0	0	0.99625	1	10600	10600		7.4771	0.85361	1	868270	+		28520	19362	20331	20497	27959	27959					0.016254901979891656
LAQKLVKEAKN	11	Unmodified	_LAQKLVKEAKN_					0	0	0			REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	MSMS	A375_MHC_IP_R2	2	414.6551208496094	3	414.590717	1240.75032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.164	1	56.914	56.414	57.414	0.75015								0	0	0	0.16224	1	21224	21224		7.0371	0.41363	1		+		28521	20820	20332	20498	27960	27960					0.13957609902649892
LAQLREIY	8	Unmodified	_LAQLREIY_					0	0	0			REV__ENSG00000122180|ENST00000241651|MYOG	REV__ENSG00000122180|ENST00000241651|MYOG	MULTI-SECPEP	A375_MHC_IP_R2	2	502.65997314453125	2	503.290017	1004.56548	-0.60374	-0.00030386	-0.039536	-1.9898E-05	-0.64328	-0.00032376	503.29024334482006	73.584	0.25475	74.32	74.192	74.447	0.73541					5	4	2	0	0	0	0.8824	1	27939	27939		30.225	5.5509	1	609430	+		28522	18192	20333	20499	27961	27961					0.0633804682288428
LAQLSVCSVWK	11	Unmodified	_LAQLSVCSVWK_					0	0	0			REV__nc|ENSG00000123908|Q9UKV8-2|AGO2	REV__nc|ENSG00000123908|Q9UKV8-2|AGO2	MSMS	A375_MHC_IP_R2	2	411.9411315917969	3	411.893519	1232.65873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.579	1	35.34	34.84	35.84	0.76177								0	0	0	0.16209	1	12487	12487		7.846	0.36898	1		+		28523	18263	20334	20500	27962	27962					0.051706032138099545
LAQNLWIS	8	Unmodified	_LAQNLWIS_					0	0	0			REV__ENSG00000134899|ENST00000652225|ERCC5	REV__ENSG00000134899|ENST00000652225|ERCC5	MULTI-MSMS	A375_MHC_IP_R1	1	473.6609802246094	2	472.763635	943.512717	-0.42044	-0.00019877	-2.4472	-0.0011569	-2.8676	-0.0013557	472.76373326979166	52.081	1.1191	52.081	51.728	52.847	0					38	21	3	0	0	0	0.77123	1	18453	18453		14.582	0	1	3837800	+		28524	18809	20335	20501	27963	27963					0.03870088760083945
LAQPFSDFN	9	Unmodified	_LAQPFSDFN_					0	0	0			REV__CACNA1S|p.N599S|1|0.36|ENSG00000081248|chr1:201076951-201076951|T/C|missense_variant	REV__CACNA1S|p.N599S|1|0.36|ENSG00000081248|chr1:201076951-201076951|T/C|missense_variant	MSMS	A375_MHC_IP_R2	2	519.6478271484375	2	519.748182	1037.48181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.642	1	59.39	58.89	59.89	0.74894								0	0	0	0.15069	1	22186	22186		20.454	4.6064	1		+		28525	15553	20336	20502	27964	27964					-0.03543109344786899
LAQPGVAI	8	Unmodified	_LAQPGVAI_					0	0	0		CON__P01045-1;CON__Q2KJ62;CON__P01044-1	CON__P01045-1	CON__P01045-1	MULTI-SECPEP	A375_MHC_IP_R2	2	385.1341552734375	2	384.734346	767.454139	-0.47719	-0.00018359	0.40021	0.00015397	-0.076981	-2.9617E-05	384.73440987344804	34.177	0.66171	34.929	34.6	35.262	0.75225					20	12	2	0	0	0	0.31137	1	12289	12289		49.669	1.3231	1	11610000		+	28526	578	20337	20503	27965	27965					0.06111032185606291
LAQPVRAF	8	Unmodified	_LAQPVRAF_					0	0	0			REV__ENST00000405362.1_1_1:174969586-174969718:+|nuORF	REV__ENST00000405362.1_1_1:174969586-174969718:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	451.66632080078125	2	451.266345	900.518136	-0.063783	-2.8783E-05	-0.08797	-3.9698E-05	-0.15175	-6.8481E-05	451.26626852532115	56.117	0.40382	56.117	55.891	56.295	0					12	7	2	0	0	0	0.5503	1	20101	20101		46.921	2.5139	1	3791600	+		28527	24435	20338	20504	27966	27966					0.06389812342570167
LAQQINPRK	9	Unmodified	_LAQQINPRK_					0	0	0			REV__ENSG00000142149|ENST00000270112|HUNK	REV__ENSG00000142149|ENST00000270112|HUNK	MULTI-SECPEP	A375_MHC_IP_R1	1	534.71923828125	2	534.31964	1066.62473	-0.92734	-0.00049549	0.099333	5.3076E-05	-0.828	-0.00044242	534.3196795681504	23.915	0.55885	23.915	23.737	24.296	0					20	10	4	0	0	0	0.78798	1	6668	6668		7.2892	1.5574	1	18080000	+		28528	19294	20339	20505	27967	27967					0.09407942837083283
LAQQINPRK	9	Unmodified	_LAQQINPRK_					0	0	0			REV__ENSG00000142149|ENST00000270112|HUNK	REV__ENSG00000142149|ENST00000270112|HUNK	MULTI-SECPEP	A375_MHC_IP_R2	2	534.7194213867188	2	534.31964	1066.62473	-1.1153	-0.00059593	0.075219	4.0191E-05	-1.0401	-0.00055573	534.3196526679701	23.122	0.30612	23.752	23.572	23.878	0.63014					13	5	3	0	0	0	0.75466	1	7393	7393		4.3292	3.2578	1	12474000	+		28529	19294	20339	20505	27968	27968					0.09407942837083283
LAQQVWHW	8	Unmodified	_LAQQVWHW_					0	0	0		nc|ENSG00000162869|Q6ZMI0-3|PPP1R21	nc|ENSG00000162869|Q6ZMI0-3|PPP1R21	nc|ENSG00000162869|Q6ZMI0-3|PPP1R21	MULTI-SECPEP	A375_MHC_IP_R1	1	534.6741943359375	2	534.274701	1066.53485	-0.63749	-0.0003406	0.16342	8.731E-05	-0.47407	-0.00025329	534.2746031882948	103.53	0.86436	103.53	103.12	103.98	0					21	16	2	0	0	0	0.972	1	38034	38034		2.5775	0	1	1673700			28530	14716	20340	20506	27969	27969					0.0042431322851825826
LAQRLQAAEEH	11	Unmodified	_LAQRLQAAEEH_					0	0	0		ENSG00000125414|ENST00000245503|MYH2	ENSG00000125414|ENST00000245503|MYH2	ENSG00000125414|ENST00000245503|MYH2	MULTI-MSMS	A375_MHC_IP_R2	2	422.6138916015625	3	422.558076	1264.6524	-0.18712	-7.9068E-05	-2.8191	-0.0011912	-3.0062	-0.0012703	422.5567610638229	39.403	0.40569	40.177	40.016	40.422	0.77451					16	7	4	0	0	0	0.71717	1	14527	14527		14.218	4.9744	1	2225600			28531	3959	20341	20507	27970	27970					0.03065801306661342
LAQRNVASL	9	Unmodified	_LAQRNVASL_					0	0	0			REV__ENSG00000134962|ENST00000257408|KLB	REV__ENSG00000134962|ENST00000257408|KLB	MULTI-MSMS	A375_MHC_IP_R2	2	486.68560791015625	2	486.285266	970.555979	-0.55567	-0.00027022	-0.5836	-0.0002838	-1.1393	-0.00055401	486.28500536115706	125.91	0.80956	126.2	125.97	126.78	0.2951					25	15	2	0	0	0	0.32899	1	49173	49173		28.487	0	1	11332000	+		28532	18814	20342	20508	27971	27971					0.06952278537380607
LAQRNVASL	9	Unmodified	_LAQRNVASL_					0	0	0			REV__ENSG00000134962|ENST00000257408|KLB	REV__ENSG00000134962|ENST00000257408|KLB	MULTI-MATCH	A375_MHC_IP_R1	1		2	486.285266	970.555979	-0.0019491	-9.4781E-07	0.94456	0.00045933	0.94261	0.00045838	486.2858335237223	126.3	0.35311	126.3	126.05	126.41	0	0.051987	0.001153	NaN	28.487	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4628300	+		28533	18814	20342	20508							0.06952278537380607
LAQRNVASL	9	Unmodified	_LAQRNVASL_					0	0	0			REV__ENSG00000134962|ENST00000257408|KLB	REV__ENSG00000134962|ENST00000257408|KLB	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	486.285266	970.555979	-0.55567	-0.00027022	-0.5836	-0.0002838	-1.1393	-0.00055401	486.28500536115706	125.91	0.80956	126.2	125.97	126.78	0.2951	-0.051987	-0.0003332	NaN	28.487	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11332000	+		28534	18814	20342	20508							0.06952278537380607
LAQSTAALEW	10	Unmodified	_LAQSTAALEW_					0	0	0		ENST00000401878.7_2_7:155569363-155569612:+|nuORF	ENST00000401878.7_2_7:155569363-155569612:+|nuORF	ENST00000401878.7_2_7:155569363-155569612:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	545.6817016601562	2	545.282389	1088.55022	-0.78865	-0.00043004	0.25362	0.00013829	-0.53503	-0.00029174	545.2824829858273	70.593	0.6591	71.327	70.946	71.605	0.73421					37	12	4	0	0	0	0.19481	1	26705	26705		49.933	0	1	55208000			28535	11561	20343	20509	27972	27972					0.009491352350551097
LAQSVDHI	8	Unmodified	_LAQSVDHI_					0	0	0		AQP1|p.G68D|1|0.54|ENSG00000240583|chr7:30912112-30912112|G/A|missense_variant	AQP1|p.G68D|1|0.54|ENSG00000240583|chr7:30912112-30912112|G/A|missense_variant	AQP1|p.G68D|1|0.54|ENSG00000240583|chr7:30912112-30912112|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	441.6763000488281	2	441.737617	881.460681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.362	1	49.362	48.862	49.862	0								0	0	0	0.16876	1	17456	17456		22.453	0	1				28536	166	20344	20510	27973	27973					0.015209253463240202
LAQTSGNAW	9	Unmodified	_LAQTSGNAW_					0	0	0			REV__ENSG00000100926|ENST00000261789|TM9SF1	REV__ENSG00000100926|ENST00000261789|TM9SF1	MULTI-MSMS	A375_MHC_IP_R1	1	474.1182556152344	2	474.232699	946.450845	-0.087493	-4.1492E-05	0.026276	1.2461E-05	-0.061217	-2.9031E-05	474.23279627987125	45.273	0.35413	45.273	45.03	45.384	0					8	6	2	0	0	0	0.58047	2	15859	15859;15868		15.847	4.2069	1	1075800	+		28537	17130	20345	20511	27974;27975	27974					-0.0245226265905103
LAQVPQVAPV	10	Unmodified	_LAQVPQVAPV_					0	0	0		ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	MULTI-MSMS	A375_MHC_IP_R1	1	511.7052917480469	2	511.305667	1020.59678	-0.4549	-0.00023259	-0.22122	-0.00011311	-0.67612	-0.0003457	511.3055006657008	73.267	0.65984	73.267	72.98	73.64	0					33	12	4	0	0	0	0.60556	1	26645	26645		20.454	1.1966	1	12809000			28538	1982	20346	20512	27976	27976					0.08730619856999056
LAQVPQVAPV	10	Unmodified	_LAQVPQVAPV_					0	0	0		ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	MULTI-MSMS	A375_MHC_IP_R2	2	511.7049865722656	2	511.305667	1020.59678	-0.93164	-0.00047635	-0.032725	-1.6732E-05	-0.96437	-0.00049309	511.305613088967	72.289	0.75845	73.023	72.67	73.428	0.73484					35	14	3	0	0	0	0.60556	1	27391	27391		20.454	1.1966	1	8444400			28539	1982	20346	20512	27977	27977					0.08730619856999056
LAQVPQVAPV	10	Unmodified	_LAQVPQVAPV_					0	0	0		ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	511.305667	1020.59678	-0.4549	-0.00023259	-0.22122	-0.00011311	-0.67612	-0.0003457	511.3055006657008	73.267	0.65984	73.267	72.98	73.64	0	0.1217	-0.00011523	NaN	20.454	33	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12809000			28540	1982	20346	20512							0.08730619856999056
LAQWRNWCSY	10	Unmodified	_LAQWRNWCSY_					0	0	0		ENST00000515541.1_1_4:79838951-79847783:-|nuORF	ENST00000515541.1_1_4:79838951-79847783:-|nuORF	ENST00000515541.1_1_4:79838951-79847783:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	442.1739501953125	3	442.873118	1325.59753	-0.69483	-0.00030772	-0.66538	-0.00029468	-1.3602	-0.0006024	442.8735153370201	58.641	0.30486	59.39	59.237	59.542	0.74894					7	5	2	0	0	0	0.94587	1	22212	22212		3.8763	1.6236	1	511560			28541	12951	20347	20513	27978	27978					-0.05224908765580949
LARAAAAGQ	9	Unmodified	_LARAAAAGQ_					0	0	0		ENST00000394009.4_1_14:74486078-74489636:+|nuORF	ENST00000394009.4_1_14:74486078-74489636:+|nuORF	ENST00000394009.4_1_14:74486078-74489636:+|nuORF	MSMS	A375_MHC_IP_R2	2	414.6582946777344	2	414.737951	827.46135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.531	1	34.283	33.783	34.783	0.75225								0	0	0	0.13805	1	12016	12016		30.225	2.0516	1				28542	11447	20348	20514	27979	27979					0.04071764786033327
LARACCFL	8	Unmodified	_LARACCFL_					0	0	0		ENST00000345046.10_1_X:152966207-152966375:-|nuORF	ENST00000345046.10_1_X:152966207-152966375:-|nuORF	ENST00000345046.10_1_X:152966207-152966375:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	449.1267395019531	2	448.727684	895.440814	-0.2007	-9.0061E-05	-1.5574	-0.00069887	-1.7581	-0.00078893	448.72685276773	87.262	0.5585	87.262	86.933	87.491	0					15	10	2	0	0	0	0.972	1	32048	32048		6.3541	0	1	1378700			28543	10900	20349	20515	27980	27980					-0.01108865189644348
LARARVIPV	9	Unmodified	_LARARVIPV_					0	0	0		ENST00000505031.6_1_12:133313703-133313853:-|nuORF	ENST00000505031.6_1_12:133313703-133313853:-|nuORF	ENST00000505031.6_1_12:133313703-133313853:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	498.22967529296875	2	497.829643	993.644734	-0.41171	-0.00020496	0.19046	9.4818E-05	-0.22125	-0.00011014	497.8296982638468	55.004	0.45729	55.004	54.771	55.228	0					16	8	3	0	0	0	0.74651	1	19690	19690		8.5933	3.8373	1	2721400			28544	12835	20350	20516	27981	27981					0.14765738567700737
LARARVIPV	9	Unmodified	_LARARVIPV_					0	0	0		ENST00000505031.6_1_12:133313703-133313853:-|nuORF	ENST00000505031.6_1_12:133313703-133313853:-|nuORF	ENST00000505031.6_1_12:133313703-133313853:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	497.829643	993.644734	-0.91794	-0.00045698	0.34552	0.00017201	-0.57242	-0.00028497	497.82978177719934	53.899	0.35949	54.65	54.404	54.764	0.75105	-0.17675	0.00014166	NaN	8.5933	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1482700			28545	12835	20350	20516							0.14765738567700737
LARDLVLSY	9	Unmodified	_LARDLVLSY_					0	0	0			REV__PCDHA9|p.D414N|1|0.15|ENSG00000204961|chr5:140849735-140849735|G/A|missense_variant	REV__PCDHA9|p.D414N|1|0.15|ENSG00000204961|chr5:140849735-140849735|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	525.7030029296875	2	525.303124	1048.5917	-0.62048	-0.00032594	0.031831	1.6721E-05	-0.58865	-0.00030922	525.3031618944929	40.571	0.35666	41.346	41.183	41.54	0.77451					9	6	2	0	0	0	0.69504	1	15094	15094		12.532	5.8084	1	2193900	+		28546	22551	20351	20517	27982	27982					0.06934315994362805
LAREQLSKQYH	11	Unmodified	_LAREQLSKQYH_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-MSMS	A375_MHC_IP_R1	1	458.6492004394531	3	458.249242	1371.7259	-0.17127	-7.8483E-05	0.16665	7.6369E-05	-0.004613	-2.1139E-06	458.249270413806	36.041	0.30382	36.041	35.83	36.133	0					9	5	2	0	0	0	0.72801	1	12053	12053		5.8681	2.2755	1	2248100			28547	9182	20352	20518	27983	27983					0.05490349749152301
LARFAGASIKI	11	Unmodified	_LARFAGASIKI_					0	0	0		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-MSMS	A375_MHC_IP_R1	1	383.2950744628906	3	382.904636	1145.69208	0.55452	0.00021233	-0.27847	-0.00010663	0.27604	0.0001057	382.9045326979961	44.312	0.4618	44.312	44.113	44.575	0					14	8	2	0	0	0	0.60387	1	15534	15534		23.016	4.6426	1	2992600			28548	1571	20353	20519	27984	27984					0.1250597304801886
LARFAGASIKI	11	Unmodified	_LARFAGASIKI_					0	0	0		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	382.904636	1145.69208	0.55452	0.00021233	-0.27847	-0.00010663	0.27604	0.0001057	382.9045326979961	44.312	0.4618	44.312	44.113	44.575	0	0.18039	4.9813E-05	NaN	23.016	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2992600			28549	1571	20353	20519							0.1250597304801886
LARGGALV	8	Unmodified	_LARGGALV_					0	0	0		ENSG00000188039|ENST00000524140|NWD1;ENST00000438489.6_1_19:16849058-16926137:+|nuORF;nc|ENSG00000188039|Q149M9|NWD1	ENSG00000188039|ENST00000524140|NWD1	ENSG00000188039|ENST00000524140|NWD1	MULTI-SECPEP	A375_MHC_IP_R2	2	379.14019775390625	2	378.739963	755.465373	0.29353	0.00011117	0.06076	2.3012E-05	0.35429	0.00013418	378.73993475562986	47.235	0.61125	47.996	47.715	48.326	0.76128					16	11	2	0	0	0	0.64068	1	17696	17696		40.449	2.2974	1	4380000			28550	8877	20354	20520	27985	27985					0.07785854279745763
LARGLPEL	8	Unmodified	_LARGLPEL_					0	0	0		ENST00000464025.5_1_11:33886210-33886258:-|nuORF	ENST00000464025.5_1_11:33886210-33886258:-|nuORF	ENST00000464025.5_1_11:33886210-33886258:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	435.165771484375	2	434.766178	867.517802	-0.25335	-0.00011015	0.090815	3.9483E-05	-0.16253	-7.0664E-05	434.76615722330223	76.052	0.76113	76.792	76.334	77.095	0.74052					36	14	3	0	0	0	0.8211	1	28795	28795		23.148	3.7094	1	7355200			28551	12220	20355	20521	27986	27986					0.07874392622716186
LARIPRLV	8	Unmodified	_LARIPRLV_					0	0	0		ENSG00000186838|ENST00000335426|SELENOV	ENSG00000186838|ENST00000335426|SELENOV	ENSG00000186838|ENST00000335426|SELENOV	MULTI-SECPEP	A375_MHC_IP_R2	2	469.1605529785156	2	469.318912	936.62327	-0.96786	-0.00045424	-0.22874	-0.00010735	-1.1966	-0.00056159	469.31875569060037	58.797	0.4057	59.544	59.336	59.742	0.74714					13	7	3	0	0	0	0.91495	1	22288	22288		7.9102	0	1	1127500			28552	8782	20356	20522	27987	27987					0.15242353538974385
LARIVHRSL	9	Unmodified	_LARIVHRSL_					0	0	0			REV__ENSG00000135476|ENST00000257934|ESPL1	REV__ENSG00000135476|ENST00000257934|ESPL1	MSMS	A375_MHC_IP_R1	1	355.5794372558594	3	355.561092	1063.66145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.72	1	39.72	39.22	40.22	0								0	0	0	0.15486	1	13601	13601		4.1895	0	1		+		28553	18857	20357	20523	27988	27988					0.13216239453663547
LARLILLFI	9	Unmodified	_LARLILLFI_					0	0	0			REV__nc|ENSG00000154767|Q01831-2|XPC	REV__nc|ENSG00000154767|Q01831-2|XPC	MULTI-MSMS	A375_MHC_IP_R1	1	357.9311218261719	3	357.914472	1070.72159	0.025714	9.2034E-06	-0.10417	-3.7283E-05	-0.078454	-2.808E-05	357.9143993800209	47.237	1.1193	47.237	46.952	48.071	0					51	21	4	0	0	0	0.74477	1	16791	16791		2.9952	0	1	48150000	+		28554	19896	20358	20524	27989	27989					0.18905537064188138
LARLQLQL	8	Unmodified	_LARLQLQL_					0	0	0			REV__ENSG00000118898|ENST00000345988|PPL	REV__ENSG00000118898|ENST00000345988|PPL	MULTI-SECPEP	A375_MHC_IP_R2	2	478.20806884765625	2	477.808377	953.6022	-0.55139	-0.00026346	0.17012	8.1287E-05	-0.38127	-0.00018217	477.80840580595526	77.465	0.45795	78.208	77.958	78.416	0.74294					14	8	2	0	0	0	0.69059	1	29432	29432		38.151	0	1	2477100	+		28555	18055	20359	20525	27990	27990					0.12354343439471904
LARNYILL	8	Unmodified	_LARNYILL_					0	0	0		ENSG00000184221|ENST00000382348|OLIG1	ENSG00000184221|ENST00000382348|OLIG1	ENSG00000184221|ENST00000382348|OLIG1	MULTI-MSMS	A375_MHC_IP_R1	1	488.7027282714844	2	488.302927	974.591301	-0.015983	-7.8045E-06	-0.056277	-2.748E-05	-0.07226	-3.5285E-05	488.30270874961184	92.709	0.71123	92.709	92.362	93.074	0					23	13	3	0	0	0	0.75322	1	34123	34123		19.439	0	1	1231000			28556	8563	20360	20526	27991	27991					0.10298941065184408
LARPGQIL	8	Unmodified	_LARPGQIL_					0	0	0			REV__chr14:35135244-35180670|131|15.66|0.06|8.12|+|2|TE_info:L1M1,L1M1_dup8089,L1,LINE,donor,-,35134390,35135244|None,PRORP|5	REV__chr14:35135244-35180670|131|15.66|0.06|8.12|+|2|TE_info:L1M1,L1M1_dup8089,L1,LINE,donor,-,35134390,35135244|None,PRORP|5	MULTI-MSMS	A375_MHC_IP_R2	2	435.28216552734375	2	434.27417	866.533787	-0.19771	-8.5861E-05	-0.1264	-5.4891E-05	-0.32411	-0.00014075	434.27412902111564	63.68	1.628	64.42	63.936	65.564	0.74022					109	31	5	0	0	0	0.70843	1	24034	24034		32.117	7.4431	1	278460000	+		28557	15705	20361	20527	27992	27992					0.09518098859621205
LARPGSSLF	9	Unmodified	_LARPGSSLF_					0	0	0		ENSG00000114395|ENST00000425346|CYB561D2	ENSG00000114395|ENST00000425346|CYB561D2	ENSG00000114395|ENST00000425346|CYB561D2	MULTI-SECPEP	A375_MHC_IP_R2	2	474.6689453125	2	474.269084	946.523616	-0.84926	-0.00040278	2.8543	0.0013537	2.005	0.00095091	474.26955763317244	58.334	0.40812	59.083	58.879	59.287	0.74894					11	7	2	0	0	0	0.38578	1	22097	22097		21.537	2.098	1	1335100			28558	3218	20362	20528	27993	27993					0.04821491134396183
LARQRLGAFG	10	Unmodified	_LARQRLGAFG_					0	0	0			REV__ENST00000564507.5_1_16:1551718-1556512:+|nuORF	REV__ENST00000564507.5_1_16:1551718-1556512:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	363.59307861328125	3	363.548964	1087.62506	0.15554	5.6547E-05	-0.68438	-0.0002488	-0.52884	-0.00019226	363.54871266070074	24.896	0.20378	24.896	24.749	24.953	0					5	3	2	0	0	0	0.93404	1	7109	7109		2.086	0	1	1891600	+		28559	17117	20363	20529	27994	27994					0.08475362556941946
LARRKKLEP	9	Unmodified	_LARRKKLEP_					0	0	0		ENSG00000174469|ENST00000361727|CNTNAP2	ENSG00000174469|ENST00000361727|CNTNAP2	ENSG00000174469|ENST00000361727|CNTNAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	371.308349609375	3	370.90838	1109.70331	0.34292	0.00012719	-0.42781	-0.00015868	-0.084889	-3.1486E-05	370.90823807271306	63.691	0.6133	63.691	63.427	64.04	0					16	11	2	0	0	0	0.81645	1	23054	23054		0	0	1	2515100			28560	7884	20364	20530	27995	27995					0.15284795142179064
LARRLGGFG	9	Unmodified	_LARRLGGFG_					0	0	0		ENST00000609803.2_1_12:46120923-46121040:-|nuORF	ENST00000609803.2_1_12:46120923-46121040:-|nuORF	ENST00000609803.2_1_12:46120923-46121040:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	946.9583740234375	1	946.55811	945.550834	0.0058197	5.5087E-06	0.077848	7.3688E-05	0.083668	7.9197E-05	946.5580485158623	144.72	0.10815	144.74	144.65	144.76	0.021408					4	2	2	0	0	0	0.77827	1	56524	56524		0	0	1	425060			28561	13938	20365	20531	27996	27996					0.07588019465435991
LARSLASFL	9	Unmodified	_LARSLASFL_					0	0	0			REV__nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	REV__nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	MULTI-MSMS	A375_MHC_IP_R1	1	489.6204528808594	2	489.292559	976.570566	-0.14806	-7.2445E-05	-0.59083	-0.00028909	-0.73889	-0.00036153	489.2918911315482	93.272	0.76468	93.272	92.922	93.686	0					21	14	2	0	0	0	0.22528	1	34276	34276		36.127	0.082828	1	1029400	+		28562	16743	20366	20532	27997	27997					0.0813435068552053
LARSLASFL	9	Unmodified	_LARSLASFL_					0	0	0			REV__nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	REV__nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	489.292559	976.570566	-0.14806	-7.2445E-05	-0.59083	-0.00028909	-0.73889	-0.00036153	489.2918911315482	93.272	0.76468	93.272	92.922	93.686	0	0.084608	0.00028803	NaN	36.127	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1029400	+		28563	16743	20366	20532							0.0813435068552053
LARSLASFL	9	Unmodified	_LARSLASFL_					0	0	0			REV__nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	REV__nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	MULTI-MATCH	A375_MHC_IP_R2	2		2	489.292559	976.570566	-0.48046	-0.00023509	-1.379	-0.00067476	-1.8595	-0.00090984	489.2916107685189	92.364	0.45495	93.103	92.836	93.291	0.73902	-0.084608	-0.00048331	NaN	36.127	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1177500	+		28564	16743	20366	20532							0.0813435068552053
LARSRPLL	8	Unmodified	_LARSRPLL_					0	0	0			REV__ENST00000570495.5_1_16:68573279-68591907:+|nuORF	REV__ENST00000570495.5_1_16:68573279-68591907:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	463.7005310058594	2	463.300719	924.586885	-0.49522	-0.00022944	0.50292	0.000233	0.0077006	3.5677E-06	463.3008761432426	39.715	0.50797	39.715	39.491	39.999	0					17	9	3	0	0	0	0.84748	1	13611	13611		36.044	0	1	5075400	+		28565	26183	20367	20533	27998	27998					0.12157476642289566
LARTWPIV	8	Unmodified	_LARTWPIV_					0	0	0			REV__EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	REV__EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	478.6895751953125	2	478.28982	954.565087	-0.2177	-0.00010413	-0.13622	-6.5151E-05	-0.35392	-0.00016928	478.28969058479413	92.607	0.66042	92.607	92.261	92.922	0					21	12	2	0	0	0	0.86263	1	34013	34013		34.102	10.082	1	2392300	+		28566	16069	20368	20534	27999	27999					0.08598671893719256
LARVLREDW	9	Unmodified	_LARVLREDW_					0	0	0		nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-2|KIFAP3	nc|ENSG00000075945|Q92845-2|KIFAP3	MULTI-MSMS	A375_MHC_IP_R1	1	386.9526062011719	3	386.552374	1156.63529	0.28936	0.00011185	0.5426	0.00020974	0.83197	0.0003216	386.5525178402506	50.94	0.45506	50.94	50.764	51.219	0					21	8	4	0	0	0	0.11448	1	18073	18073		48.073	28.447	1	4861000			28567	1626	20369	20535	28000	28000					0.06323925491528826
LARVLREDW	9	Unmodified	_LARVLREDW_					0	0	0		nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-2|KIFAP3	nc|ENSG00000075945|Q92845-2|KIFAP3	MULTI-MSMS	A375_MHC_IP_R2	2	386.95245361328125	3	386.552374	1156.63529	-0.35292	-0.00013642	0.30915	0.0001195	-0.043773	-1.6921E-05	386.55248974245677	50.071	0.50963	50.825	50.548	51.057	0.75406					22	9	4	0	0	0	0.19226	1	18818	18818		38.559	22.284	1	3164600			28568	1626	20369	20535	28001	28001					0.06323925491528826
LARYFEQC	8	Unmodified	_LARYFEQC_					0	0	0			REV__ENST00000468781.5_1_9:95858594-95875386:+|nuORF	REV__ENST00000468781.5_1_9:95858594-95875386:+|nuORF	MSMS	A375_MHC_IP_R2	2	515.1627807617188	2	515.244752	1028.47495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.89	1	110.63	110.13	111.13	0.74684								0	0	0	0.16876	1	41461	41461		13.508	1.8676	1		+		28569	20563	20370	20536	28002	28002					-0.038147454970157924
LASADVVILY	10	Unmodified	_LASADVVILY_					0	0	0		nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1	nc|ENSG00000102038|P28370-2|SMARCA1	nc|ENSG00000102038|P28370-2|SMARCA1	MULTI-SECPEP	A375_MHC_IP_R2	2	532.7049560546875	2	532.305332	1062.59611	-0.42961	-0.00022868	-0.025804	-1.3736E-05	-0.45541	-0.00024242	532.3052168782838	94.972	0.96607	95.723	95.33	96.296	0.75045					48	18	4	0	0	0	0.69172	1	36024	36024		32.305	1.6689	1	19450000			28570	2352	20371	20537	28003	28003					0.0673178041729443
LASAISNWVQ	10	Unmodified	_LASAISNWVQ_					0	0	0		nc|ENSG00000140022|Q8WXE9|STON2;nc|ENSG00000140022|Q8WXE9-3|STON2;ENSG00000140022|ENST00000614646|STON2;ENST00000555226.1_1_14:81862181-81864726:-|nuORF	nc|ENSG00000140022|Q8WXE9|STON2	nc|ENSG00000140022|Q8WXE9|STON2	MULTI-SECPEP	A375_MHC_IP_R2	2	544.68798828125	2	544.790381	1087.56621	-0.75575	-0.00041172	-2.1666	-0.0011803	-2.9223	-0.001592	545.2912968819279	73.564	0.45761	74.3	73.99	74.447	0.73541					14	8	2	0	0	0	0.78945	1	27877	27877		19.257	7.6167	1	1047200			28571	5124	20372	20538	28004	28004					0.025928414719373905
LASARALIL	9	Unmodified	_LASARALIL_					0	0	0		nc|ENSG00000087299|Q9H9P8-2|L2HGDH;ENSG00000087299|ENST00000267436|L2HGDH	nc|ENSG00000087299|Q9H9P8-2|L2HGDH	nc|ENSG00000087299|Q9H9P8-2|L2HGDH	MULTI-SECPEP	A375_MHC_IP_R1	1	464.70263671875	2	464.302927	926.591301	-0.23309	-0.00010823	-0.40489	-0.00018799	-0.63798	-0.00029622	464.3026655140809	55.304	0.50799	55.304	55.025	55.533	0					23	9	3	0	0	0	0.11436	1	19728	19728		68.081	10.609	1	6730300			28572	1867	20373	20539	28005	28005					0.125069410651804
LASCLTMVEL	10	Unmodified	_LASCLTMVEL_					0	0	0			REV__USP9X|p.F1296S|1|0.38|ENSG00000124486|chrX:41189385-41189385|T/C|missense_variant	REV__USP9X|p.F1296S|1|0.38|ENSG00000124486|chrX:41189385-41189385|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	540.6766357421875	2	540.277403	1078.54025	-0.63691	-0.00034411	-0.11199	-6.0507E-05	-0.74891	-0.00040462	540.2772712928216	77.383	1.6793	77.383	76.673	78.352	0					66	32	3	0	0	0	0.36703	1	28155	28155		36.127	1.195	1	3036100	+		28573	28972	20374	20540	28006	28006					0.0041248791380894545
LASCLTMVEL	10	Unmodified	_LASCLTMVEL_					0	0	0			REV__USP9X|p.F1296S|1|0.38|ENSG00000124486|chrX:41189385-41189385|T/C|missense_variant	REV__USP9X|p.F1296S|1|0.38|ENSG00000124486|chrX:41189385-41189385|T/C|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	540.277403	1078.54025	-0.84494	-0.0004565	-0.55738	-0.00030114	-1.4023	-0.00075764	540.2772202541888	76.862	2.4392	77.605	76.541	78.98	0.74293	0.1108	-0.00033663	NaN	36.127	69	47	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3478200	+		28574	28972	20374	20540							0.0041248791380894545
LASDKKNYL	9	Unmodified	_LASDKKNYL_					0	0	0			REV__ENSG00000117569|ENST00000674951|PTBP2	REV__ENSG00000117569|ENST00000674951|PTBP2	MULTI-MSMS	A375_MHC_IP_R2	2	526.1945190429688	2	526.292756	1050.57096	-0.551	-0.00028999	1.2705	0.00066866	0.71951	0.00037867	526.2936415576967	55.378	0.96481	56.129	55.626	56.591	0.75075					46	17	4	0	0	0	0.6324	1	20793	20793		19.439	0	1	24349000	+		28575	18013	20375	20541	28007	28007					0.04769725614710296
LASDKVVY	8	Unmodified	_LASDKVVY_					0	0	0			REV__ENSG00000109758|ENST00000382774|HGFAC	REV__ENSG00000109758|ENST00000382774|HGFAC	MULTI-SECPEP	A375_MHC_IP_R1	1	448.150146484375	2	447.750193	893.485833	0.072128	3.2295E-05	0.061906	2.7718E-05	0.13403	6.0014E-05	447.75006745567157	37.363	0.51044	37.363	37.045	37.556	0					19	9	3	0	0	0	0.8824	1	12579	12579		23.148	0	1	5327000	+	+	28576	17595	20376	20542	28008	28008					0.03482980148908155
LASDLQRVY	9	Unmodified	_LASDLQRVY_					0	0	0		nc|ENSG00000143748|O15381-5|NVL;ENSG00000143748|ENST00000281701|NVL	nc|ENSG00000143748|O15381-5|NVL	nc|ENSG00000143748|O15381-5|NVL	MULTI-SECPEP	A375_MHC_IP_R1	1	532.2186279296875	2	532.790381	1063.56621	-0.25814	-0.00013754	-0.12032	-6.4103E-05	-0.37846	-0.00020164	532.7902988105361	48.44	0.60744	48.44	48.122	48.729	0					23	11	3	0	0	0	0.13208	1	17137	17137		57.722	13.95	1	7208900			28577	14655	20377	20543	28009	28009					0.03696841471969492
LASDLQRVY	9	Unmodified	_LASDLQRVY_					0	0	0		nc|ENSG00000143748|O15381-5|NVL;ENSG00000143748|ENST00000281701|NVL	nc|ENSG00000143748|O15381-5|NVL	nc|ENSG00000143748|O15381-5|NVL	MULTI-SECPEP	A375_MHC_IP_R2	2	532.21875	2	532.790381	1063.56621	-0.57903	-0.0003085	-0.37588	-0.00020026	-0.95491	-0.00050877	532.7901141023332	47.679	0.50833	48.441	48.174	48.682	0.76128					23	9	3	0	0	0	0.048303	1	17879	17879		83.429	37.729	1	5261900			28578	14655	20377	20543	28010	28010					0.03696841471969492
LASDLVETF	9	Unmodified	_LASDLVETF_					0	0	0			REV__ENSG00000203668|ENST00000366553|CHML	REV__ENSG00000203668|ENST00000366553|CHML	MULTI-SECPEP	A375_MHC_IP_R2	2	498.1579895019531	2	497.758215	993.501877	-0.40669	-0.00020243	1.1256	0.00056026	0.71888	0.00035783	497.758598115722	69.144	0.7098	69.879	69.575	70.285	0.73511					24	13	3	0	0	0	0.43707	1	26209	26209		36.044	1.9418	1	2037700	+		28579	22464	20378	20544	28011	28011					0.00486641595148285
LASDLVETF	9	Unmodified	_LASDLVETF_					0	0	0			REV__ENSG00000203668|ENST00000366553|CHML	REV__ENSG00000203668|ENST00000366553|CHML	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	497.758215	993.501877	-0.093314	-4.6448E-05	1.2768	0.00063555	1.1835	0.0005891	497.7588067237113	70.06	0.65974	70.06	69.732	70.392	0	0.090477	4.9704E-05	NaN	36.044	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2529800	+		28580	22464	20378	20544							0.00486641595148285
LASESKSPA	9	Unmodified	_LASESKSPA_					0	0	0			REV__ENST00000555762.1_1_14:94517539-94521656:-|nuORF	REV__ENST00000555762.1_1_14:94517539-94521656:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	445.63482666015625	2	445.234907	888.455261	-0.51384	-0.00022878	1.0186	0.0004535	0.50473	0.00022472	445.2352955555975	50.558	0.70984	51.312	50.955	51.665	0.75406					24	13	3	0	0	0	0.68216	1	19035	19035		8.5933	0	1	1788000	+		28581	16919	20379	20545	28012	28012					0.006572017638632133
LASESRVY	8	Unmodified	_LASESRVY_					0	0	0		nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT	MULTI-MSMS	A375_MHC_IP_R1	1	462.5461120605469	2	462.742899	923.471246	-0.41796	-0.00019341	0.20784	9.6179E-05	-0.21011	-9.7227E-05	462.7429096391673	25.74	0.45464	25.74	25.613	26.068	0					14	8	2	0	0	0	0.53027	1	7555	7555		47.749	13.347	1	6295000			28582	3874;14576	20380	20546	28013	28013					0.006449080007655539
LASESRVY	8	Unmodified	_LASESRVY_					0	0	0		nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	462.742899	923.471246	-0.41796	-0.00019341	0.20784	9.6179E-05	-0.21011	-9.7227E-05	462.7429096391673	25.74	0.45464	25.74	25.613	26.068	0	-0.062222	8.2744E-05	NaN	47.749	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6295000			28583	3874;14576	20380	20546							0.006449080007655539
LASESRVY	8	Unmodified	_LASESRVY_					0	0	0		nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	462.742899	923.471246	-0.9627	-0.00044548	-0.012547	-5.8062E-06	-0.97525	-0.00045129	462.74294247612244	25.22	0.45866	25.864	25.719	26.178	0.64368	0.062222	-0.00012123	NaN	47.749	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2800600			28584	3874;14576	20380	20546							0.006449080007655539
LASHGYVEV	9	Unmodified	_LASHGYVEV_					0	0	0		ENST00000336451.7_1_6:151757569-151765660:-|nuORF;nc|ENSG00000155906|Q9NWS8-3|RMND1;ENST00000491268.1_1_6:151757569-151766946:-|nuORF;ENSG00000155906|ENST00000444024|RMND1	ENST00000336451.7_1_6:151757569-151765660:-|nuORF	ENST00000336451.7_1_6:151757569-151765660:-|nuORF	MSMS	A375_MHC_IP_R1	1	487.6994323730469	2	487.750724	973.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.324	1	83.324	82.824	83.824	0								0	0	0	0.14812	1	30489	30489		24.674	4.2203	1				28585	6164	20381	20547	28014	28014					-0.0009080548218207696
LASHKLFKI	9	Unmodified	_LASHKLFKI_					0	0	0			REV__ENST00000598240.1_1_19:19105804-19136912:-|nuORF	REV__ENST00000598240.1_1_19:19105804-19136912:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	352.60089111328125	3	352.890327	1055.64915	-0.62904	-0.00022198	-1.4752	-0.00052057	-2.1042	-0.00074255	352.8897313851088	24.823	0.6097	25.467	25.263	25.873	0.64368					28	11	4	0	0	0	0.77948	1	8355	8355		6.6304	1.3335	1	3409000	+		28586	16480	20382	20548	28015	28015					0.12355202990602265
LASIIKINY	9	Unmodified	_LASIIKINY_					0	0	0		ENSG00000138336|ENST00000373644|TET1;nc|ENSG00000138336|Q8NFU7-2|TET1	ENSG00000138336|ENST00000373644|TET1	ENSG00000138336|ENST00000373644|TET1	MULTI-SECPEP	A375_MHC_IP_R2	2	518.21533203125	2	517.815867	1033.61718	-0.57943	-0.00030004	-0.52557	-0.00027215	-1.105	-0.00057219	517.8156053351651	93.72	0.71082	94.465	94.006	94.717	0.74473					20	13	2	0	0	0	0.31606	1	35657	35657		47.749	17.112	1	1718900			28587	4979	20383	20549	28016	28016					0.10171790516801593
LASKIKEV	8	Unmodified	_LASKIKEV_					0	0	0		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-MSMS	A375_MHC_IP_R1	1	444.6815185546875	2	444.28166	886.548768	-0.070675	-3.1399E-05	-0.079734	-3.5424E-05	-0.15041	-6.6824E-05	444.2816789829005	73.777	0.40441	73.777	73.539	73.943	0					12	7	2	0	0	0	0.77515	1	26900	26900		12.532	0	1	1115200			28588	2734	20384	20550	28017	28017					0.10095545936951567
LASKIKEV	8	Unmodified	_LASKIKEV_					0	0	0		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-MATCH	A375_MHC_IP_R2	2		2	444.28166	886.548768	-0.44194	-0.00019635	-0.033882	-1.5053E-05	-0.47582	-0.0002114	444.281660510571	72.723	0.45678	73.459	73.278	73.734	0.73541	-0.15905	2.7116E-05	NaN	12.532	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	808450			28589	2734	20384	20550							0.10095545936951567
LASKLYNLI	9	Unmodified	_LASKLYNLI_					0	0	0			REV__nc|ENSG00000134987|Q8NI36|WDR36	REV__nc|ENSG00000134987|Q8NI36|WDR36	MULTI-SECPEP	A375_MHC_IP_R1	1	517.693115234375	2	517.815867	1033.61718	-0.45076	-0.00023341	0.17963	9.3016E-05	-0.27113	-0.00014039	517.8159989064825	47.588	0.50413	47.588	47.366	47.87	0					19	9	3	0	0	0	0.76187	1	16807	16807		7.2892	0.56607	1	5543200	+		28590	18816	20385	20551	28018	28018					0.10171790516801593
LASLKFGSL	9	Unmodified	_LASLKFGSL_					0	0	0		ENST00000549198.1_1_12:53342525-53343518:-|nuORF;ENST00000551318.1_1_12:53342525-53343546:-|nuORF	ENST00000549198.1_1_12:53342525-53343518:-|nuORF	ENST00000549198.1_1_12:53342525-53343518:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	467.6625671386719	2	468.28166	934.548768	-0.63065	-0.00029532	0.037068	1.7358E-05	-0.59358	-0.00027796	468.2815441763266	70.693	0.30331	71.427	71.2	71.503	0.73421					8	5	2	0	0	0	0.3607	1	26723	26723		34.102	7.7612	1	1727200			28591	13357	20386	20552	28019	28019					0.07887545936955576
LASLLRAGGV	10	Unmodified	_LASLLRAGGV_					0	0	0		ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	MULTI-SECPEP	A375_MHC_IP_R1	1	479.1739196777344	2	478.798009	955.581465	-0.52743	-0.00025253	-0.17831	-8.5374E-05	-0.70574	-0.00033791	478.79801196146417	34.367	0.30347	34.367	34.203	34.507	0					8	5	2	0	0	0	0.78945	1	11291	11291		5.7319	0	1	2288400			28592	2834	20387	20553	28020	28020					0.10189753059808027
LASLTGGVLI	10	Unmodified	_LASLTGGVLI_					0	0	0		SLC2A12|p.L460Ffs*46|1|0.27|ENSG00000146411|chr6:134028445-134028446|-/A|frameshift_variant;ENSG00000146411|ENST00000275230|SLC2A12	SLC2A12|p.L460Ffs*46|1|0.27|ENSG00000146411|chr6:134028445-134028446|-/A|frameshift_variant	SLC2A12|p.L460Ffs*46|1|0.27|ENSG00000146411|chr6:134028445-134028446|-/A|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	472.6943664550781	2	472.294768	942.574983	-0.46666	-0.0002204	0.048975	2.313E-05	-0.41768	-0.00019727	472.29472673901057	68.714	1.4707	69.449	69.018	70.489	0.73511					79	28	4	0	0	0	0.029956	1	26153	26153		81.613	7.4134	1	91439000			28593	5621	20388	20554	28021	28021					0.10139815108436778
LASPLLLPAV	10	Unmodified	_LASPLLLPAV_					0	0	0			REV__ENST00000290573.6_1_2:75119969-75120071:+|nuORF	REV__ENST00000290573.6_1_2:75119969-75120071:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	497.7201843261719	2	497.320786	992.627018	-0.28265	-0.00014057	-0.92841	-0.00046172	-1.2111	-0.00060228	497.32028798276207	94.343	0.45599	95.087	94.818	95.274	0.74473					12	8	2	0	0	0	0.89109	1	35865	35865		11.64	9.7961	1	1112700	+		28594	23356	20389	20555	28022	28022					0.13040978522178648
LASPQAESTAL	11	Unmodified	_LASPQAESTAL_					0	0	0		nc|ENSG00000066827|Q9P243-3|ZFAT;nc|ENSG00000066827|Q9P243-2|ZFAT;ENSG00000066827|ENST00000377838|ZFAT;nc|ENSG00000066827|Q9P243-4|ZFAT	nc|ENSG00000066827|Q9P243-3|ZFAT	nc|ENSG00000066827|Q9P243-3|ZFAT	MULTI-SECPEP	A375_MHC_IP_R1	1	362.9125671386719	3	363.192511	1086.5557	0.03508	1.2741E-05	0.71943	0.00026129	0.75451	0.00027403	363.1928768412728	28.113	0.95744	28.113	27.584	28.541	0					23	18	2	0	0	0	0.95991	1	8583	8583		7.0371	4.6023	1	3012000			28595	1421	20390	20556	28023	28023					0.015888140268543793
LASPQAESTAL	11	Unmodified	_LASPQAESTAL_					0	0	0		nc|ENSG00000066827|Q9P243-3|ZFAT;nc|ENSG00000066827|Q9P243-2|ZFAT;ENSG00000066827|ENST00000377838|ZFAT;nc|ENSG00000066827|Q9P243-4|ZFAT	nc|ENSG00000066827|Q9P243-3|ZFAT	nc|ENSG00000066827|Q9P243-3|ZFAT	MULTI-SECPEP	A375_MHC_IP_R2	2	362.9123840332031	3	363.192511	1086.5557	-0.074027	-2.6886E-05	0.46145	0.00016759	0.38742	0.00014071	363.1927924720809	27.274	0.86504	27.952	27.587	28.452	0.67857					25	16	2	0	0	0	0.95991	1	9333	9333		7.0371	3.1608	1	1422700			28596	1421	20390	20556	28024	28024					0.015888140268543793
LASPQPTNLVV	11	Unmodified	_LASPQPTNLVV_					0	0	0			REV__nc|ENSG00000124942|Q09666-2|AHNAK	REV__nc|ENSG00000124942|Q09666-2|AHNAK	MULTI-SECPEP	A375_MHC_IP_R2	2	569.2006225585938	2	569.826963	1137.63937	-0.66108	-0.0003767	-0.59941	-0.00034156	-1.2605	-0.00071826	569.8265723986615	52.079	0.40816	52.832	52.574	52.983	0.75225					16	7	3	0	0	0	0.79027	1	19663	19663		33.445	4.3633	1	1577100	+		28597	27203	20391	20557	28025	28025					0.0760597019452689
LASQAKLA	8	Unmodified	_LASQAKLA_					0	0	0			REV__nc|ENSG00000159409|Q5SZQ8-4|CELF3	REV__nc|ENSG00000159409|Q5SZQ8-4|CELF3	MULTI-SECPEP	A375_MHC_IP_R1	1	401.6450500488281	2	401.245078	800.475603	-0.33946	-0.00013621	0.41398	0.00016611	0.074519	2.9901E-05	401.24519390460966	61.457	0.66332	61.457	61.176	61.839	0					17	12	2	0	0	0	0.8824	1	22144	22144		30.225	0	1	4876100	+		28598	20118	20392	20558	28026	28026					0.06738417214330639
LASQGLRKY	9	Unmodified	_LASQGLRKY_					0	0	0		ENST00000560365.5_1_14:24631516-24632718:+|nuORF;ENST00000559284.5_1_14:24631519-24633284:+|nuORF	ENST00000560365.5_1_14:24631516-24632718:+|nuORF	ENST00000560365.5_1_14:24631516-24632718:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	518.184814453125	2	518.300916	1034.58728	-0.54732	-0.00028368	-0.30745	-0.00015935	-0.85477	-0.00044303	518.3007733284477	47.337	0.86566	48.099	47.867	48.733	0.76128					23	16	2	0	0	0	0.71541	1	17768	17768		7.2892	7.2892	1	3861100			28599	13477	20393	20559	28027	28027					0.07136851571476654
LASRAHQIFE	10	Unmodified	_LASRAHQIFE_					0	0	0		ENSG00000143333|ENST00000367558|RGS16	ENSG00000143333|ENST00000367558|RGS16	ENSG00000143333|ENST00000367558|RGS16	MULTI-SECPEP	A375_MHC_IP_R1	1	586.7141723632812	2	586.314554	1170.61456	-0.29732	-0.00017432	-0.28748	-0.00016855	-0.58479	-0.00034287	586.3143186725517	53.408	0.55876	53.408	53.199	53.758	0					15	10	2	0	0	0	0.77204	1	19020	19020		21.537	0	1	4097700			28600	5370	20394	20560	28028	28028					0.036073351118375285
LASRCRASSI	10	Unmodified	_LASRCRASSI_					0	0	0			REV__ENST00000530878.5_2_1:162039737-162039962:+|nuORF	REV__ENST00000530878.5_2_1:162039737-162039962:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	531.6087036132812	2	532.287482	1062.56041	-0.55083	-0.0002932	0.034047	1.8123E-05	-0.51678	-0.00027508	532.2871146162734	63.165	0.51379	63.165	62.863	63.377	0					12	9	2	0	0	0	0.88918	1	22894	22894		8.7454	0	1	1329400	+		28601	25842	20395	20561	28029	28029					0.03163419688644353
LASRGPLA	8	Unmodified	_LASRGPLA_					0	0	0		ENST00000482648.5_1_9:135973742-135973952:-|nuORF	ENST00000482648.5_1_9:135973742-135973952:-|nuORF	ENST00000482648.5_1_9:135973742-135973952:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	393.1383361816406	2	392.73742	783.460287	0.00035525	1.3952E-07	0.86911	0.00034133	0.86947	0.00034147	392.7378895808431	143.49	1.0089	143.51	142.83	143.84	0.024414					28	19	2	0	0	0	0.972	1	56076	56076		2.8892	0	1	3024100			28602	12528	20396	20562	28030	28030					0.05989550417143619
LASRSLRQ	8	Unmodified	_LASRSLRQ_					0	0	0		ENST00000463077.5_1_3:149459310-149470177:-|nuORF;ENSG00000114744|ENST00000473414|COMMD2;nc|ENSG00000114744|Q86X83-2|COMMD2	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	465.6924743652344	2	465.777608	929.540663	-0.64004	-0.00029811	-0.36826	-0.00017153	-1.0083	-0.00046964	465.77743618081985	75.978	0.70982	76.718	76.385	77.095	0.74052					18	13	2	0	0	0	0.75805	1	28912	28912		18.135	3.2967	1	712550			28603	3242	20397	20563	28031	28031					0.07307411740180214
LASSHAAPT	9	Unmodified	_LASSHAAPT_					0	0	0			REV__ENST00000330899.4_1_9:33025292-33026479:+|nuORF	REV__ENST00000330899.4_1_9:33025292-33026479:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	428.1214599609375	2	427.721967	853.429381	-0.25453	-0.00010887	-0.486	-0.00020787	-0.74053	-0.00031674	427.72169582058655	74.756	0.60992	75.493	75.111	75.721	0.73752					25	11	3	0	0	0	0.6898	1	28344	28344		7.9102	0	1	5287400	+		28604	23626	20398	20564	28032	28032					-0.0031964768777470454
LASSHAAPT	9	Unmodified	_LASSHAAPT_					0	0	0			REV__ENST00000330899.4_1_9:33025292-33026479:+|nuORF	REV__ENST00000330899.4_1_9:33025292-33026479:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	427.721967	853.429381	-0.25453	-0.00010887	-0.486	-0.00020787	-0.74053	-0.00031674	427.72169582058655	74.756	0.60992	75.493	75.111	75.721	0.73752	0.027266	5.6158E-06	NaN	7.9102	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5287400	+		28605	23626	20398	20564							-0.0031964768777470454
LASSKRVKAL	10	Unmodified	_LASSKRVKAL_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MSMS	A375_MHC_IP_R2	2	358.2610778808594	3	358.232752	1071.67643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.257	1	50.015	49.515	50.515	0.75737								0	0	0	0.15585	1	18507	18507		0.77653	0	1				28606	1334	20399	20565	28033	28033					0.14345686530987223
LASSRRQL	8	Unmodified	_LASSRRQL_					0	0	0			REV__ENSG00000115020|ENST00000264380|PIKFYVE	REV__ENSG00000115020|ENST00000264380|PIKFYVE	MSMS	A375_MHC_IP_R1	1	465.6922912597656	2	465.777608	929.540663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.168	1	77.168	76.668	77.668	0								0	0	0	0.16876	1	28147	28147		14.582	1.0738	1		+		28607	17852	20400	20566	28034	28034					0.07307411740191583
LASSVISLGL	10	Unmodified	_LASSVISLGL_					0	0	0			REV__ENSG00000168795|ENST00000307750|ZBTB5	REV__ENSG00000168795|ENST00000307750|ZBTB5	MULTI-MSMS	A375_MHC_IP_R1	1	480.6922302246094	2	480.292225	958.569897	-0.48425	-0.00023258	0.20156	9.6809E-05	-0.28269	-0.00013577	480.2922297488957	76.496	0.55826	76.496	76.269	76.827	0					14	10	2	0	0	0	0.36703	1	27922	27922		36.127	6.2864	1	1686100	+		28608	20886	20401	20567	28035	28035					0.08895511245816579
LASSVISLGL	10	Unmodified	_LASSVISLGL_					0	0	0			REV__ENSG00000168795|ENST00000307750|ZBTB5	REV__ENSG00000168795|ENST00000307750|ZBTB5	MULTI-MSMS	A375_MHC_IP_R2	2	480.6921691894531	2	480.292225	958.569897	-0.57435	-0.00027586	0.017002	8.166E-06	-0.55735	-0.00026769	480.2922481936676	75.605	0.66406	76.346	75.925	76.589	0.74052					16	12	2	0	0	0	0.36703	1	28692	28692		36.127	6.2864	1	1927100	+		28609	20886	20401	20567	28036	28036					0.08895511245816579
LASSVISLGL	10	Unmodified	_LASSVISLGL_					0	0	0			REV__ENSG00000168795|ENST00000307750|ZBTB5	REV__ENSG00000168795|ENST00000307750|ZBTB5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	480.292225	958.569897	-0.57435	-0.00027586	0.017002	8.166E-06	-0.55735	-0.00026769	480.2922481936676	75.605	0.66406	76.346	75.925	76.589	0.74052	-0.075139	-3.9229E-05	NaN	36.127	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1927100	+		28610	20886	20401	20567							0.08895511245816579
LASTQFLTAA	10	Unmodified	_LASTQFLTAA_					0	0	0			REV__ZNF385D|p.P372S|1|0.38|ENSG00000151789|chr3:21421288-21421288|G/A|missense_variant	REV__ZNF385D|p.P372S|1|0.38|ENSG00000151789|chr3:21421288-21421288|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	511.6867370605469	2	511.779482	1021.54441	-0.40268	-0.00020608	0.51045	0.00026124	0.10777	5.5153E-05	511.7796805052422	70.774	0.56224	70.774	70.545	71.108	0					26	10	3	0	0	0	0.57505	1	25629	25629		22.736	3.4793	1	22516000	+		28611	19774	20402	20568	28037	28037					0.03450036723359062
LASVDISLPS	10	Unmodified	_LASVDISLPS_					0	0	0		ENST00000443950.6_1_10:43890103-43891918:-|nuORF	ENST00000443950.6_1_10:43890103-43891918:-|nuORF	ENST00000443950.6_1_10:43890103-43891918:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	502.6822814941406	2	501.279315	1000.54408	-0.27082	-0.00013575	0.29794	0.00014935	0.027123	1.3596E-05	501.279295621616	62.546	1.6898	62.546	62.097	63.786	0					86	32	4	0	0	0	0.57505	1	22532	22532		22.736	2.2827	1	10837000			28612	12010	20403	20569	28038	28038					0.04382617003534506
LASVPPQFLLK	11	Unmodified	_LASVPPQFLLK_					0	0	0			REV__ENSG00000205978|ENST00000382554|NYNRIN	REV__ENSG00000205978|ENST00000382554|NYNRIN	MSMS	A375_MHC_IP_R1	1	606.7683715820312	2	606.871174	1211.72779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.01	1	131.01	130.51	131.51	0								0	0	0	0.16275	1	50497	50497		2.7352	1.5419	1		+		28613	22589	20404	20570	28039	28039					0.13040010505051214
LASYLDRV	8	Unmodified	_LASYLDRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000510337.1_1_5:122971848-122972142:+|nuORF;ENST00000411618.1_1_9:30800375-30800732:-|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000577198.5_1_17:26603697-26633156:-|nuORF;ENST00000506277.1_1_5:36885388-36885895:+|nuORF;ENST00000416086.1_1_X:127848522-127848843:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000396959.2_1_3:12829511-12830132:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	A375_MHC_IP_R1	1	469.1611633300781	2	468.761092	935.507631	-0.29999	-0.00014063	0.19196	8.9985E-05	-0.10803	-5.064E-05	468.76109838151467	54.8	1.0149	54.8	54.213	55.228	0					33	19	3	0	0	0	0.2241	1	19549	19549		65.235	6.5562	1	12468000			28614	2963;11498	20405	20571	28040	28040					0.03729784897461741
LASYLDRV	8	Unmodified	_LASYLDRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000510337.1_1_5:122971848-122972142:+|nuORF;ENST00000411618.1_1_9:30800375-30800732:-|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000577198.5_1_17:26603697-26633156:-|nuORF;ENST00000506277.1_1_5:36885388-36885895:+|nuORF;ENST00000416086.1_1_X:127848522-127848843:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000396959.2_1_3:12829511-12830132:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	MULTI-SECPEP	A375_MHC_IP_R2	2	469.16064453125	2	468.761092	935.507631	-0.998	-0.00046782	0.33012	0.00015475	-0.66788	-0.00031308	468.76116353192685	53.987	1.0725	54.738	54.046	55.118	0.75105					40	20	4	0	0	0	0.23546	1	20323	20323		74.929	6.8483	1	11696000			28615	2963;11498	20405	20571	28041	28041					0.03729784897461741
LATEEVVAL	9	Unmodified	_LATEEVVAL_					0	0	0			REV__ENSG00000185915|ENST00000379499|KLHL34	REV__ENSG00000185915|ENST00000379499|KLHL34	MULTI-MSMS	A375_MHC_IP_R1	1	473.1684875488281	2	472.768583	943.522613	-0.30095	-0.00014228	-0.058516	-2.7664E-05	-0.35946	-0.00016994	472.76851805236936	105.87	1.0208	105.87	105.55	106.57	0					34	19	3	0	0	0	0.0098247	1	38865	38865		114.94	5.3145	1	2963400	+		28616	21930	20406	20572	28042	28042					0.04859231974796785
LATEEVVAL	9	Unmodified	_LATEEVVAL_					0	0	0			REV__ENSG00000185915|ENST00000379499|KLHL34	REV__ENSG00000185915|ENST00000379499|KLHL34	MULTI-SECPEP	A375_MHC_IP_R2	2	473.16796875	2	472.768583	943.522613	-0.5133	-0.00024267	0.011373	5.3768E-06	-0.50192	-0.00023729	472.76852779497847	104.98	0.96497	105.74	105.31	106.28	0.76308					26	18	2	0	0	0	0.025883	1	39729	39729		101.72	4.6473	1	3629200	+		28617	21930	20406	20572	28043	28043					0.04859231974796785
LATEEVVAL	9	Unmodified	_LATEEVVAL_					0	0	0			REV__ENSG00000185915|ENST00000379499|KLHL34	REV__ENSG00000185915|ENST00000379499|KLHL34	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	472.768583	943.522613	-0.30095	-0.00014228	-0.058516	-2.7664E-05	-0.35946	-0.00016994	472.76851805236936	105.87	1.0208	105.87	105.55	106.57	0	0.062697	-3.0284E-05	NaN	114.94	34	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2963400	+		28618	21930	20406	20572							0.04859231974796785
LATEYLVIVL	10	Unmodified	_LATEYLVIVL_					0	0	0			REV__HSP90AA1|p.L665V|1|0.27|ENSG00000080824|chr14:102082207-102082207|A/C|missense_variant	REV__HSP90AA1|p.L665V|1|0.27|ENSG00000080824|chr14:102082207-102082207|A/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	566.7389526367188	2	567.344458	1132.67436	-0.59527	-0.00033772	-4.3394	-0.002462	-4.9347	-0.0027997	567.3411596499386	131.7	0.25262	131.7	131.48	131.73	0					5	4	2	0	0	0	0.93799	1	50715	50715		6.7232	3.1267	1	778270	+		28619	26761	20407	20573	28044	28044					0.11333213002512821
LATFFWML	8	Unmodified	_LATFFWML_					0	0	0		ENST00000459892.5_1_2:26531956-26538428:-|nuORF;nc|ENSG00000173567|Q8IZF5-2|ADGRF3;nc|ENSG00000173567|Q8IZF5-3|ADGRF3;ENSG00000173567|ENST00000651242|ADGRF3;nc|ENSG00000173567|Q8IZF5|ADGRF3	ENST00000459892.5_1_2:26531956-26538428:-|nuORF	ENST00000459892.5_1_2:26531956-26538428:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	514.388916015625	2	514.767332	1027.52011	-0.71215	-0.00036659	0.36397	0.00018736	-0.34818	-0.00017923	514.7675429646031	101.79	0.60978	102.55	102.36	102.97	0.76428					27	11	3	0	0	0	0.85124	1	38606	38606		26.341	26.341	1	3878200			28620	7809	20408	20574	28045	28045					0.007451050361396483
LATFFWML	8	Unmodified	_LATFFWML_					0	0	0		ENST00000459892.5_1_2:26531956-26538428:-|nuORF;nc|ENSG00000173567|Q8IZF5-2|ADGRF3;nc|ENSG00000173567|Q8IZF5-3|ADGRF3;ENSG00000173567|ENST00000651242|ADGRF3;nc|ENSG00000173567|Q8IZF5|ADGRF3	ENST00000459892.5_1_2:26531956-26538428:-|nuORF	ENST00000459892.5_1_2:26531956-26538428:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	514.767332	1027.52011	-0.47229	-0.00024312	0.45817	0.00023585	-0.014112	-7.2642E-06	514.7674771671675	102.72	0.55707	102.72	102.4	102.96	0	0.081167	4.2408E-05	NaN	26.341	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4022800			28621	7809	20408	20574							0.007451050361396483
LATFIHSAL	9	Unmodified	_LATFIHSAL_					0	0	0			REV__DFFA|p.L242F|1|0.22|ENSG00000160049|chr1:10463117-10463117|G/A|missense_variant	REV__DFFA|p.L242F|1|0.22|ENSG00000160049|chr1:10463117-10463117|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	486.1451110839844	2	486.779285	971.544017	-0.59925	-0.0002917	0.30034	0.0001462	-0.29891	-0.0001455	486.7791123969551	75.67	0.5111	76.411	76.129	76.64	0.74052					11	9	2	0	0	0	0.60012	1	28707	28707		12.532	5.2423	1	749020	+		28622	15987	20409	20575	28046	28046					0.05710661794171301
LATHIFSL	8	Unmodified	_LATHIFSL_					0	0	0		AKAP11|p.L1207F|1|0.2|ENSG00000023516|chr13:42302365-42302365|C/T|missense_variant	AKAP11|p.L1207F|1|0.2|ENSG00000023516|chr13:42302365-42302365|C/T|missense_variant	AKAP11|p.L1207F|1|0.2|ENSG00000023516|chr13:42302365-42302365|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	450.6327819824219	2	451.260728	900.506903	-0.26683	-0.00012041	0.072752	3.283E-05	-0.19407	-8.7578E-05	451.2606505960463	74.062	0.71291	74.799	74.245	74.958	0.73752					18	13	2	0	0	0	0.94479	1	28027	28027		8.5933	0	1	675540			28623	95	20410	20576	28047	28047					0.05266990248424008
LATHVWRPGRK	11	Unmodified	_LATHVWRPGRK_					0	0	0		ENST00000412471.5_2_2:27434382-27434796:-|nuORF	ENST00000412471.5_2_2:27434382-27434796:-|nuORF	ENST00000412471.5_2_2:27434382-27434796:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	661.2845458984375	2	660.886013	1319.75747	-1.2472	-0.00082428	-0.79156	-0.00052313	-2.0388	-0.0013474	660.8854912767825	52.155	0.45776	52.907	52.626	53.083	0.75225					26	8	4	0	0	0	0.45155	1	19611	19611		34.932	12.274	1	25703000			28624	11649	20411	20577	28048	28048					0.11038387293706364
LATKFSTV	8	Unmodified	_LATKFSTV_					0	0	0		ENST00000465617.1_1_10:12123569-12136179:+|nuORF;ENSG00000181192|ENST00000263035|DHTKD1	ENST00000465617.1_1_10:12123569-12136179:+|nuORF	ENST00000465617.1_1_10:12123569-12136179:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	433.2855224609375	2	433.752736	865.490919	-0.15931	-6.9102E-05	-0.44228	-0.00019184	-0.60159	-0.00026094	433.75237484300845	91.334	0.60609	92.068	91.616	92.222	0.73451					18	11	2	0	0	0	0.972	1	34757	34757		8.5933	0	1	603790			28625	8337	20412	20578	28049	28049					0.05279284011521668
LATKTQITF	9	Unmodified	_LATKTQITF_					0	0	0			REV__ENST00000280200.8_3_18:67530273-67530405:-|nuORF	REV__ENST00000280200.8_3_18:67530273-67530405:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	511.1787414550781	2	511.797675	1021.5808	-0.44599	-0.00022826	0.18067	9.2466E-05	-0.26532	-0.00013579	511.7974370716481	63.739	0.46027	63.739	63.427	63.887	0					13	8	2	0	0	0	0.58271	1	23104	23104		20.454	10.38	1	1005800	+		28626	23312	20413	20579	28050	28050					0.07086913620094037
LATLELLGK	9	Unmodified	_LATLELLGK_					0	0	0		ENSG00000167700|ENST00000301327|MFSD3;ENST00000528047.5_1_8:145736154-145736544:+|nuORF	ENSG00000167700|ENST00000301327|MFSD3	ENSG00000167700|ENST00000301327|MFSD3	MSMS	A375_MHC_IP_R1	1	479.4935302734375	2	479.302593	956.590633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.525	1	80.525	80.025	81.025	0								0	0	0	0.15486	1	29408	29408		7.2892	2.5332	1				28627	7213	20414	20580	28051	28051					0.11060101625469088
LATLKDNEY	9	Unmodified	_LATLKDNEY_					0	0	0		nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MSMS	A375_MHC_IP_R2	2	533.6820068359375	2	533.774396	1065.53424	-0.7815	-0.00041715	-0.032632	-1.7418E-05	-0.81414	-0.00043456	533.7742268038581	31.467	0.30632	32.186	32.026	32.332	0.71857					8	5	2	0	0	0	0.22528	1	11170	11170		36.127	1.7253	1	1624700			28628	6695	20415	20581	28052	28052					0.004094289981367183
LATNYLAL	8	Unmodified	_LATNYLAL_					0	0	0			REV__ENSG00000016864|ENST00000266014|GLT8D1	REV__ENSG00000016864|ENST00000266014|GLT8D1	MSMS	A375_MHC_IP_R2	2	439.6536560058594	2	439.752736	877.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.604	1	65.344	64.844	65.844	0.74022								0	0	0	0.16876	1	24493	24493		12.532	0	1		+		28629	16252	20416	20582	28053	28053					0.04727284011505617
LATPLPKDY	9	Unmodified	_LATPLPKDY_					0	0	0		ENSG00000136197|ENST00000350427|C7orf25;nc|nan|Q9BPX7-2|C7orf25	ENSG00000136197|ENST00000350427|C7orf25	ENSG00000136197|ENST00000350427|C7orf25	MULTI-SECPEP	A375_MHC_IP_R1	1	509.6864318847656	2	509.2844	1016.55425	-0.53962	-0.00027482	0.86823	0.00044218	0.32862	0.00016736	509.28419107614576	80.931	0.50893	80.931	80.642	81.151	0					20	9	3	0	0	0	0.3607	1	29498	29498		34.102	0	1	1654100			28630	4764	20417	20583	28054	28054					0.04663224728756177
LATPPLQAL	9	Unmodified	_LATPPLQAL_					0	0	0		nc|ENSG00000183248|Q9H6K5-2|PRR36;ENSG00000183248|ENST00000618550|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-SECPEP	A375_MHC_IP_R2	2	462.15325927734375	2	462.28166	922.548768	-0.58559	-0.00027071	0.24394	0.00011277	-0.34165	-0.00015794	462.2817004570889	55.562	0.55653	56.312	55.984	56.54	0.75075					14	10	2	0	0	0	0.53748	1	21015	21015		24.021	0	1	1984700			28631	8477	20418	20584	28055	28055					0.0843954593693752
LATRGSAL	8	Unmodified	_LATRGSAL_					0	0	0		ENSG00000184840|ENST00000332598|TMED9;ENST00000507723.1_1_5:177019275-177020791:+|nuORF;ENST00000505521.1_1_5:177019227-177019656:+|nuORF	ENSG00000184840|ENST00000332598|TMED9	ENSG00000184840|ENST00000332598|TMED9	MULTI-MSMS	A375_MHC_IP_R1	1	395.2731628417969	2	394.734877	787.455202	-0.30028	-0.00011853	0.40113	0.00015834	0.10085	3.9809E-05	394.7349397847627	36.72	0.45616	36.72	36.489	36.945	0					16	8	3	0	0	0	0.70843	1	12283	12283		32.117	0	1	5638900			28632	8612	20419	20585	28056	28056					0.052972465545167324
LATSQALDTVW	11	Unmodified	_LATSQALDTVW_					0	0	0		ENSG00000145569|ENST00000274217|OTULINL;ENST00000513825.1_1_5:14601096-14602296:+|nuORF	ENSG00000145569|ENST00000274217|OTULINL	ENSG00000145569|ENST00000274217|OTULINL	MULTI-MSMS	A375_MHC_IP_R1	1	402.61187744140625	3	402.211794	1203.61355	-0.45962	-0.00018486	0.83259	0.00033488	0.37297	0.00015001	402.2123309202788	47.029	0.91925	47.029	46.699	47.618	0					23	17	2	0	0	0	0.73111	1	16565	16565		7.846	1.2226	1	3232900			28633	5565	20420	20586	28057	28057					0.019890759522468215
LATSQALDTVW	11	Unmodified	_LATSQALDTVW_					0	0	0		ENSG00000145569|ENST00000274217|OTULINL;ENST00000513825.1_1_5:14601096-14602296:+|nuORF	ENSG00000145569|ENST00000274217|OTULINL	ENSG00000145569|ENST00000274217|OTULINL	MULTI-SECPEP	A375_MHC_IP_R2	2	402.13714599609375	3	402.211794	1203.61355	0.096251	3.8713E-05	0.069942	2.8132E-05	0.16619	6.6845E-05	402.2119015297322	46.268	0.71155	47.033	46.704	47.416	0.76519					18	13	2	0	0	0	0.73984	1	17315	17315		14.838	8.6035	1	3145500			28634	5565	20420	20586	28058	28058					0.019890759522468215
LATSQALDTVW	11	Unmodified	_LATSQALDTVW_					0	0	0		ENSG00000145569|ENST00000274217|OTULINL;ENST00000513825.1_1_5:14601096-14602296:+|nuORF	ENSG00000145569|ENST00000274217|OTULINL	ENSG00000145569|ENST00000274217|OTULINL	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	402.211794	1203.61355	-0.45962	-0.00018486	0.83259	0.00033488	0.37297	0.00015001	402.2123309202788	47.029	0.91925	47.029	46.699	47.618	0	-0.0020306	0.00057023	NaN	7.846	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3232900			28635	5565	20420	20586							0.019890759522468215
LATTILQHW	9	Unmodified	_LATTILQHW_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	A375_MHC_IP_R1	1	542.2030029296875	2	541.803291	1081.59203	-0.8176	-0.00044298	0.30321	0.00016428	-0.51439	-0.0002787	541.8034020920325	85.557	0.30511	85.557	85.412	85.717	0					10	5	2	0	0	0	0.39273	1	31395	31395		47.749	24.6	1	1507300			28636	9866	20421	20587	28059	28059					0.054497357142281544
LATVIEKHV	9	Unmodified	_LATVIEKHV_					0	0	0			REV__ENST00000379061.8_1_17:26712241-26725107:+|nuORF	REV__ENST00000379061.8_1_17:26712241-26725107:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	505.66162109375	2	505.305667	1008.59678	-0.36736	-0.00018563	-0.65225	-0.00032959	-1.0196	-0.00051522	505.30522988152615	75.232	0.40347	75.232	74.958	75.362	0					12	7	2	0	0	0	0.73363	1	27335	27335		15.847	5.7733	1	800450	+		28637	16095	20422	20588	28060	28060					0.09282619856981
LATWVELTT	9	Unmodified	_LATWVELTT_					0	0	0		ENST00000240285.9_1_8:74206860-74207115:+|nuORF	ENST00000240285.9_1_8:74206860-74207115:+|nuORF	ENST00000240285.9_1_8:74206860-74207115:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	516.6895751953125	2	517.281857	1032.54916	-0.61558	-0.00031843	1.5368	0.00079494	0.92119	0.00047652	517.2841470186404	84.893	0.30797	85.629	85.523	85.831	0.73601					8	5	2	0	0	0	0.65246	1	32293	32293		10.824	1.4408	1	617760			28638	10168	20423	20589	28061	28061					0.034189208661246084
LATYKWTV	8	Unmodified	_LATYKWTV_					0	0	0			REV__ENSG00000090857|ENST00000288050|PDPR	REV__ENSG00000090857|ENST00000288050|PDPR	MULTI-SECPEP	A375_MHC_IP_R2	2	491.66070556640625	2	491.273835	980.533118	-0.67556	-0.00033189	-0.34507	-0.00016952	-1.0206	-0.00050141	491.27380883611823	66.4	0.40855	67.137	66.882	67.29	0.73631					12	7	2	0	0	0	0.93416	1	25202	25202		5.2307	0	1	875650	+		28639	16932	20424	20590	28062	28062					0.042072594199112245
LATYPRGP	8	Unmodified	_LATYPRGP_					0	0	0			REV__ENST00000435576.2_1_1:48241052-48459876:-|nuORF	REV__ENST00000435576.2_1_1:48241052-48459876:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	437.1816711425781	2	437.742702	873.470852	-0.37094	-0.00016238	0.16602	7.2673E-05	-0.20493	-8.9705E-05	437.7425513307318	66.777	0.35803	66.777	66.529	66.887	0					10	6	2	0	0	0	0.94479	1	24185	24185		4.756	0	1	581180	+		28640	24750	20425	20591	28063	28063					0.029055330715777927
LAVAAFTVSV	10	Unmodified	_LAVAAFTVSV_					0	0	0		nc|ENSG00000152128|Q8TC26-2|TMEM163;ENSG00000152128|ENST00000281924|TMEM163	nc|ENSG00000152128|Q8TC26-2|TMEM163	nc|ENSG00000152128|Q8TC26-2|TMEM163	MULTI-MSMS	A375_MHC_IP_R2	2	489.6863708496094	2	489.286943	976.559333	-0.72306	-0.00035378	0.12515	6.1234E-05	-0.59791	-0.00029255	489.2870094396053	72.329	0.65818	73.064	72.821	73.48	0.73541					18	12	2	0	0	0	0.25271	1	27467	27467		43.858	3.6191	1	1862900			28641	5947	20426	20592	28064	28064					0.07011528591374372
LAVAPDGTIY	10	Unmodified	_LAVAPDGTIY_					0	0	0		nc|ENSG00000145934|Q9NT68-2|TENM2;ENSG00000145934|ENST00000518659|TENM2	nc|ENSG00000145934|Q9NT68-2|TENM2	nc|ENSG00000145934|Q9NT68-2|TENM2	MULTI-MSMS	A375_MHC_IP_R1	1	510.6735534667969	2	510.274032	1018.53351	-0.322	-0.00016431	-0.17656	-9.0095E-05	-0.49856	-0.0002544	510.27396106575895	105.48	4.1225	105.48	104.89	109.02	0					228	80	5	0	0	0	0.40101	1	39462	39462		34.102	2.8341	1	780440000			28642	5593	20427	20593	28065	28065					0.024986343491036678
LAVAPDGTIY	10	Unmodified	_LAVAPDGTIY_					0	0	0		nc|ENSG00000145934|Q9NT68-2|TENM2;ENSG00000145934|ENST00000518659|TENM2	nc|ENSG00000145934|Q9NT68-2|TENM2	nc|ENSG00000145934|Q9NT68-2|TENM2	MULTI-SECPEP	A375_MHC_IP_R2	2	510.6819763183594	2	510.274032	1018.53351	-0.73598	-0.00037555	-1.1929	-0.00060871	-1.9289	-0.00098427	510.27393899974385	102.7	1.8814	103.46	102.36	104.24	0.76428					49	36	3	0	0	0	0.62479	1	39077	39077		21.747	0	1	1758200			28643	5593	20427	20593	28066	28066					0.024986343491036678
LAVASFPKKQE	11	Unmodified	_LAVASFPKKQE_					0	0	0		ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	MULTI-MSMS	A375_MHC_IP_R1	1	406.9677734375	3	406.567801	1216.68157	-0.36392	-0.00014796	0.013788	5.6058E-06	-0.35014	-0.00014235	406.5678172144197	32.079	0.46255	32.079	31.819	32.282	0					15	8	2	0	0	0	0.57268	1	10331	10331		25.438	13.21	1	2357300			28644	3102	20428	20594	28067	28067					0.08189945602930493
LAVCVCFLC	9	Unmodified	_LAVCVCFLC_					0	0	0		ENST00000458044.1_1_1:235097141-235097261:-|nuORF	ENST00000458044.1_1_1:235097141-235097261:-|nuORF	ENST00000458044.1_1_1:235097141-235097261:-|nuORF	MSMS	A375_MHC_IP_R2	2	485.70782470703125	2	485.731577	969.448602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.273	1	86.009	85.509	86.509	0.73601								0	0	0	0.15427	1	32418	32418		14.582	3.4672	1				28645	12145	20429	20595	28068	28068					-0.03734473984377473
LAVDRLSLA	9	Unmodified	_LAVDRLSLA_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	MULTI-MSMS	A375_MHC_IP_R2	2	479.68939208984375	2	479.290017	956.565481	-0.84037	-0.00040278	0.047942	2.2978E-05	-0.79243	-0.0003798	479.29001439455897	71.485	0.60751	72.22	71.959	72.567	0.73421					30	11	4	0	0	0	0.12771	1	27095	27095		45.7	5.7423	1	6658500			28646	7244	20430	20596	28069	28069					0.08546046822903008
LAVDRPQA	8	Unmodified	_LAVDRPQA_					0	0	0			REV__ENST00000494718.5_1_X:51637400-51640272:+|nuORF	REV__ENST00000494718.5_1_X:51637400-51640272:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	434.66851806640625	2	435.245609	868.476666	-0.02431	-1.0581E-05	0.0661	2.877E-05	0.04179	1.8189E-05	435.2456265064559	51.854	0.40815	51.854	51.728	52.136	0					9	7	2	0	0	0	0.69122	1	18379	18379		32.305	1.6689	1	1163700	+		28647	21548	20431	20597	28070	28070					0.037166315832337204
LAVGHVRPQQA	11	Unmodified	_LAVGHVRPQQA_					0	0	0			REV__ENSG00000186648|ENST00000342740|CARMIL3	REV__ENSG00000186648|ENST00000342740|CARMIL3	MULTI-MSMS	A375_MHC_IP_R1	1	392.9003601074219	3	392.55964	1174.65709	0.098056	3.8493E-05	0.53126	0.00020855	0.62932	0.00024704	392.55980720919865	31.395	0.60842	31.395	31.059	31.667	0					18	11	2	0	0	0	0.72565	1	10119	10119		7.0371	0	1	1611700	+		28648	21980	20432	20598	28071	28071					0.07674730240069039
LAVHPAGDNVI	11	Unmodified	_LAVHPAGDNVI_					0	0	0		nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	MULTI-MSMS	A375_MHC_IP_R2	2	552.6972045898438	2	553.303655	1104.59276	-0.71644	-0.00039641	-0.48505	-0.00026838	-1.2015	-0.00066479	553.3031922951106	70.173	0.65999	70.907	70.591	71.251	0.73421					25	11	3	0	0	0	0.57844	1	26626	26626		24.991	3.454	1	5368000			28649	9937	20433	20599	28072	28072					0.04464530363270569
LAVHPAGDNVI	11	Unmodified	_LAVHPAGDNVI_					0	0	0		nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	553.303655	1104.59276	-0.45025	-0.00024912	-0.0083327	-4.6105E-06	-0.45858	-0.00025373	553.3036246927305	70.993	0.71681	70.993	70.698	71.415	0	0.043063	0.00024857	NaN	24.991	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5725700			28650	9937	20433	20599							0.04464530363270569
LAVKDERLY	9	Unmodified	_LAVKDERLY_					0	0	0		ENSG00000171302|ENST00000392446|CANT1;nc|ENSG00000171302|Q8WVQ1-3|CANT1	ENSG00000171302|ENST00000392446|CANT1	ENSG00000171302|ENST00000392446|CANT1	MULTI-SECPEP	A375_MHC_IP_R1	1	553.1693115234375	2	553.813856	1105.61316	-0.59615	-0.00033016	-1.3117	-0.00072641	-1.9078	-0.0010566	553.8132975907816	81.278	0.60924	81.278	80.846	81.455	0					13	11	2	0	0	0	0.69507	1	29758	29758		5.7319	2.1354	1	1312100			28651	7592	20434	20600	28073	28073					0.06457701023100526
LAVKDERLY	9	Unmodified	_LAVKDERLY_					0	0	0		ENSG00000171302|ENST00000392446|CANT1;nc|ENSG00000171302|Q8WVQ1-3|CANT1	ENSG00000171302|ENST00000392446|CANT1	ENSG00000171302|ENST00000392446|CANT1	MULTI-MATCH	A375_MHC_IP_R2	2		2	553.813856	1105.61316	-0.79638	-0.00044105	-0.91133	-0.00050471	-1.7077	-0.00094575	553.8137964847413	80.396	0.40493	81.141	80.961	81.365	0.74474	-0.068901	0.00021025	NaN	5.7319	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1217200			28652	7592	20434	20600							0.06457701023100526
LAVLLCLW	8	Unmodified	_LAVLLCLW_					0	0	0			REV__nc|ENSG00000006118|Q24JP5-4|TMEM132A	REV__nc|ENSG00000006118|Q24JP5-4|TMEM132A	MULTI-MSMS	A375_MHC_IP_R2	2	465.686279296875	2	465.777699	929.540846	-0.64004	-0.00029811	-0.56462	-0.00026299	-1.2047	-0.0005611	465.77743618081985	75.978	0.70982	76.718	76.385	77.095	0.74052					18	13	2	0	0	0	0.76194	1	28736	28736		17.087	0	1	712550	+		28653	16132	20435	20601	28074	28074					0.07325695415806877
LAVLLHPHPS	10	Unmodified	_LAVLLHPHPS_					0	0	0			REV__ENST00000368520.1_1_10:135345455-135368187:+|nuORF	REV__ENST00000368520.1_1_10:135345455-135368187:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	362.2452697753906	3	361.881831	1082.62366	0.15307	5.5392E-05	-0.27163	-9.8297E-05	-0.11856	-4.2906E-05	361.8816504790799	28.381	0.85805	28.381	27.887	28.745	0					32	16	4	0	0	0	0.70741	1	8541	8541		8.9762	1.8745	1	10543000	+		28654	23997	20436	20602	28075	28075					0.08565728468170164
LAVLQEEY	8	Unmodified	_LAVLQEEY_					0	0	0			REV__ENSG00000005249|ENST00000265717|PRKAR2B	REV__ENSG00000005249|ENST00000265717|PRKAR2B	MULTI-MSMS	A375_MHC_IP_R2	2	482.7026062011719	2	482.752933	963.491313	-0.53634	-0.00025892	-0.58516	-0.00028249	-1.1215	-0.00054141	482.7527679735163	104.03	0.30399	104.79	104.55	104.85	0.76308					7	5	2	0	0	0	0.76683	1	39318	39318		15.768	1.1865	1	363930	+		28655	16118	20437	20603	28076	28076					0.00810658940713438
LAVLRGYDV	9	Unmodified	_LAVLRGYDV_					0	0	0		ENSG00000198380|ENST00000357308|GFPT1;nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000131459|ENST00000253778|GFPT2	ENSG00000198380|ENST00000357308|GFPT1;ENSG00000131459|ENST00000253778|GFPT2	ENSG00000198380|ENST00000357308|GFPT1	MULTI-SECPEP	A375_MHC_IP_R1	1	503.68951416015625	2	503.290017	1004.56548	-0.14968	-7.5334E-05	-0.15346	-7.7235E-05	-0.30314	-0.00015257	503.28996450159264	71.766	1.0085	71.766	71.516	72.524	0					34	19	3	0	0	0	0.11711	1	26101	26101		69.105	7.503	1	7454100			28656	9261;4330	20438	20604	28077	28077					0.06338046822895649
LAVLRGYDV	9	Unmodified	_LAVLRGYDV_					0	0	0		ENSG00000198380|ENST00000357308|GFPT1;nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000131459|ENST00000253778|GFPT2	ENSG00000198380|ENST00000357308|GFPT1;ENSG00000131459|ENST00000253778|GFPT2	ENSG00000198380|ENST00000357308|GFPT1	MULTI-SECPEP	A375_MHC_IP_R2	2	503.6897888183594	2	503.290017	1004.56548	-0.77248	-0.00038878	0.10021	5.0436E-05	-0.67226	-0.00033834	503.2901038517538	71.019	0.60867	71.754	71.453	72.061	0.73421					29	11	3	0	0	0	0.11711	1	26887	26887		60.074	6.6699	1	9207200			28657	9261;4330	20438	20604	28078	28078					0.06338046822895649
LAVLVPARGL	10	Unmodified	_LAVLVPARGL_					0	0	0			REV__ENSG00000112245|ENST00000626021|PTP4A1	REV__ENSG00000112245|ENST00000626021|PTP4A1	MULTI-MSMS	A375_MHC_IP_R2	2	504.8247985839844	2	504.831852	1007.64915	-0.68397	-0.00034529	-0.20684	-0.00010442	-0.89081	-0.00044971	504.83172238769896	83.008	0.70495	83.748	83.344	84.049	0.73962					29	13	3	0	0	0	0.69947	1	31646	31646		12.532	0	1	6400800	+		28658	17719	20439	20605	28079	28079					0.14563202990609625
LAVPRYDV	8	Unmodified	_LAVPRYDV_					0	0	0			REV__ENST00000532280.1_1_9:33675440-33676694:-|nuORF	REV__ENST00000532280.1_1_9:33675440-33676694:-|nuORF	MSMS	A375_MHC_IP_R2	2	466.6763000488281	2	466.763635	931.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.57	1	75.307	74.807	75.807	0.73752								0	0	0	0.16876	1	28304	28304		21.747	2.4897	1		+		28659	25864	20440	20606	28080	28080					0.04422088760088627
LAVRGAQP	8	Unmodified	_LAVRGAQP_					0	0	0		ENST00000374379.8_1_1:25071916-25072063:+|nuORF	ENST00000374379.8_1_1:25071916-25072063:+|nuORF	ENST00000374379.8_1_1:25071916-25072063:+|nuORF	MSMS	A375_MHC_IP_R1	1	406.28338623046875	2	406.24287	810.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.293	1	73.293	72.793	73.793	0								0	0	0	0.16876	1	26681	26681		10.183	0	1				28660	11252	20441	20607	28081	28081					0.05836952791423755
LAVRPVAG	8	Unmodified	_LAVRPVAG_					0	0	0			REV__ENSG00000184389|ENST00000442999|A3GALT2	REV__ENSG00000184389|ENST00000442999|A3GALT2	MULTI-SECPEP	A375_MHC_IP_R1	1	392.1478271484375	2	391.747788	781.481023	0.090134	3.531E-05	0.401	0.00015709	0.49113	0.0001924	391.7478598839037	31.999	0.61398	31.999	31.769	32.383	0					15	11	2	0	0	0	0.94479	1	10333	10333		13.508	0	1	2093100	+		28661	21817	20442	20608	28082	28082					0.08154140796807496
LAVRPVAG	8	Unmodified	_LAVRPVAG_					0	0	0			REV__ENSG00000184389|ENST00000442999|A3GALT2	REV__ENSG00000184389|ENST00000442999|A3GALT2	MULTI-MATCH	A375_MHC_IP_R2	2		2	391.747788	781.481023	-0.21468	-8.41E-05	0.3779	0.00014804	0.16322	6.3941E-05	391.7478288507343	31.264	0.35869	31.982	31.821	32.18	0.71857	-0.0082501	-9.5947E-06	NaN	13.508	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1585400	+		28662	21817	20442	20608							0.08154140796807496
LAVRRGNLPL	10	Unmodified	_LAVRRGNLPL_					0	0	0		nc|ENSG00000145700|Q8N7Z5|ANKRD31;ENSG00000145700|ENST00000506364|ANKRD31	nc|ENSG00000145700|Q8N7Z5|ANKRD31	nc|ENSG00000145700|Q8N7Z5|ANKRD31	MULTI-SECPEP	A375_MHC_IP_R2	2	369.95703125	3	370.236497	1107.68766	0.033409	1.2369E-05	-0.18529	-6.8602E-05	-0.15188	-5.6232E-05	370.2363794421991	51.899	0.357	52.651	52.372	52.729	0.75225					9	6	2	0	0	0	0.93216	1	19565	19565		6.6304	6.6304	1	1355400			28663	5570	20443	20609	28083	28083					0.13812508625142073
LAVSALGLLA	10	Unmodified	_LAVSALGLLA_					0	0	0			REV__ENSG00000158156|ENST00000373884|XKR8	REV__ENSG00000158156|ENST00000373884|XKR8	MULTI-SECPEP	A375_MHC_IP_R2	2	464.6968078613281	2	464.29731	926.580068	-0.74061	-0.00034386	0.07712	3.5807E-05	-0.66349	-0.00030805	464.2973238247756	65.459	0.50733	66.197	65.968	66.475	0.73811					16	9	2	0	0	0	0.57563	1	24831	24831		32.305	3.8186	1	2349500	+		28664	20064	20444	20610	28084	28084					0.11384118971045609
LAVSHGRVDV	10	Unmodified	_LAVSHGRVDV_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000587317.1_1_19:11277236-11281082:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-SECPEP	A375_MHC_IP_R1	1	526.6943359375	2	526.795998	1051.57744	-0.75748	-0.00039904	0.64316	0.00033882	-0.11432	-6.0221E-05	526.796342308842	134.04	0.30611	134.04	133.91	134.22	0					6	5	2	0	0	0	0.85226	1	51713	51713		20.454	3.5113	1	5633600			28665	9137	20445	20611	28085	28085					0.05371663566097595
LAVTRLEGV	9	Unmodified	_LAVTRLEGV_					0	0	0		nc|ENSG00000161513|P22570-4|FDXR;ENST00000577509.5_1_17:72858941-72868963:-|nuORF;nc|ENSG00000161513|P22570|FDXR;ENSG00000161513|ENST00000293195|FDXR;nc|ENSG00000161513|P22570-2|FDXR;nc|ENSG00000161513|P22570-7|FDXR;nc|ENSG00000161513|P22570-3|FDXR;nc|ENSG00000161513|P22570-6|FDXR;nc|ENSG00000161513|P22570-5|FDXR	nc|ENSG00000161513|P22570-4|FDXR	nc|ENSG00000161513|P22570-4|FDXR	MULTI-SECPEP	A375_MHC_IP_R1	1	479.69000244140625	2	479.290017	956.565481	-0.26156	-0.00012536	-0.085833	-4.1139E-05	-0.34739	-0.0001665	479.2898729483296	72.282	0.65836	72.282	72.018	72.676	0					28	12	3	0	0	0	0.35487	1	26271	26271		43.858	0	1	5823300			28666	6474	20446	20612	28086	28086					0.08546046822903008
LAVVGTYLLV	10	Unmodified	_LAVVGTYLLV_					0	0	0		ENSG00000001461|ENST00000374399|NIPAL3;nc|ENSG00000001461|Q6P499-2|NIPAL3;nc|ENSG00000001461|Q6P499-3|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	MULTI-SECPEP	A375_MHC_IP_R2	2	524.2159423828125	2	524.326068	1046.63758	-0.46977	-0.00024631	-0.23159	-0.00012143	-0.70136	-0.00036774	524.3259566927238	104.06	0.55997	104.82	104.6	105.16	0.76308					22	10	3	0	0	0	0.85226	1	39357	39357		20.454	1.1966	1	2422800			28667	844	20447	20613	28087	28087					0.116129611766155
LAVVTDLGKS	10	Unmodified	_LAVVTDLGKS_					0	0	0			REV__ENSG00000165688|ENST00000371717|PMPCA	REV__ENSG00000165688|ENST00000371717|PMPCA	MULTI-MSMS	A375_MHC_IP_R2	2	502.177001953125	2	501.795132	1001.57571	-0.73939	-0.00037102	0.042042	2.1097E-05	-0.69735	-0.00034993	501.79513694070414	44.903	0.56122	45.672	45.39	45.951	0.7691					30	10	4	0	0	0	0.36703	1	16848	16848		36.127	0	1	14476000	+		28668	20613	20448	20614	28088	28088					0.07498609757476515
LAVYIDRV	8	Unmodified	_LAVYIDRV_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENST00000470199.2_1_1:156084502-156100509:+|nuORF	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-SECPEP	A375_MHC_IP_R1	1	475.17913818359375	2	474.779285	947.544017	-0.63285	-0.00030046	0.3199	0.00015188	-0.31296	-0.00014859	474.7793752077294	65.625	1.1684	65.625	65.36	66.529	0					49	22	4	0	0	0	0.2175	1	23737	23737		68.081	6.7232	1	20175000			28669	6442	20449	20615	28089	28089					0.06814661794192034
LAVYIDRV	8	Unmodified	_LAVYIDRV_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENST00000470199.2_1_1:156084502-156100509:+|nuORF	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-SECPEP	A375_MHC_IP_R2	2	475.1794128417969	2	474.779285	947.544017	-0.54117	-0.00025694	-0.16297	-7.7375E-05	-0.70414	-0.00033431	474.7791852617228	64.8	0.96574	65.538	65.155	66.121	0.73812					49	18	4	0	0	0	0.26691	1	24524	24524		58.679	6.4105	1	21957000			28670	6442	20449	20615	28090	28090					0.06814661794192034
LAWDAKKKVY	10	Unmodified	_LAWDAKKKVY_					0	0	0			REV__nc|ENSG00000048392|Q7LG56-2|RRM2B	REV__nc|ENSG00000048392|Q7LG56-2|RRM2B	MSMS	A375_MHC_IP_R2	2	611.3531494140625	2	611.353148	1220.69174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.32	1	100.08	99.58	100.58	0.75977								0	0	0	0.1552	1	37676	37676		3.9444	0.3479	1		+		28671	16369	20450	20616	28091	28091					0.09022553328168215
LAWEEHTF	8	Unmodified	_LAWEEHTF_					0	0	0			REV__nc|ENSG00000197857|P15621-2|ZNF44	REV__nc|ENSG00000197857|P15621-2|ZNF44	MSMS	A375_MHC_IP_R2	2	516.6719970703125	2	516.742899	1031.47125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.3	1	31.019	30.519	31.519	0.71857								0	0	0	0.16876	1	10643	10643		10.183	0.80027	1		+		28672	22323	20451	20617	28092	28092					-0.043230919992538475
LAWEYEAD	8	Unmodified	_LAWEYEAD_					0	0	0		ENST00000411977.6_1_19:54041389-54041443:+|nuORF	ENST00000411977.6_1_19:54041389-54041443:+|nuORF	ENST00000411977.6_1_19:54041389-54041443:+|nuORF	MSMS	A375_MHC_IP_R1	1	498.6559753417969	2	498.71909	995.423627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.76	1	43.76	43.26	44.26	0								0	0	0	0.16876	1	15232	15232		10.183	0.83596	1				28673	11645	20452	20618	28093	28093					-0.07426790990098198
LAWLEHNQ	8	Unmodified	_LAWLEHNQ_					0	0	0		ENSG00000173110|ENST00000309758|HSPA6;ENST00000445535.1_1_1:161576981-161578004:+|nuORF	ENSG00000173110|ENST00000309758|HSPA6	ENSG00000173110|ENST00000309758|HSPA6	MSMS	A375_MHC_IP_R1	1	505.69140625	2	505.756341	1009.49813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.87	1	131.87	131.37	132.37	0								0	0	0	0.16876	1	50844	50844		24.674	1.5255	1				28674	7769	20453	20619	28094	28094					-0.0062398338806133324
LAWNKTNP	8	Unmodified	_LAWNKTNP_					0	0	0		nc|ENSG00000152763|Q5VTH9-2|DNAI4;nc|ENSG00000152763|Q5VTH9-3|DNAI4;ENSG00000152763|ENST00000371026|DNAI4	nc|ENSG00000152763|Q5VTH9-2|DNAI4	nc|ENSG00000152763|Q5VTH9-2|DNAI4	MULTI-SECPEP	A375_MHC_IP_R2	2	472.6142272949219	2	472.253434	942.492316	-0.50386	-0.00023795	1.7362	0.00081991	1.2323	0.00058197	472.25416456893436	27.359	0.30638	28.038	27.792	28.098	0.67857					7	5	2	0	0	0	0.90775	1	9349	9349		20.454	0	1	1310000			28675	5981	20454	20620	28095	28095					0.018769181002653568
LAWRWPWSC	9	Unmodified	_LAWRWPWSC_					0	0	0		ENST00000502875.1_1_4:141564423-141564600:-|nuORF	ENST00000502875.1_1_4:141564423-141564600:-|nuORF	ENST00000502875.1_1_4:141564423-141564600:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	402.6117248535156	3	402.195533	1203.56477	0.13474	5.4193E-05	3.2287	0.0012986	3.3635	0.0013528	402.19687125200835	46.573	0.30794	47.338	47.108	47.416	0.76519					8	5	2	0	0	0	0.75466	1	17354	17354		4.897	2.0537	1	1011300			28676	12799	20455	20621	28096	28096					-0.02887071097802618
LAYCRSYSAL	10	Unmodified	_LAYCRSYSAL_					0	0	0			REV__nc|ENSG00000118690|Q8NEN0-2|ARMC2	REV__nc|ENSG00000118690|Q8NEN0-2|ARMC2	MULTI-SECPEP	A375_MHC_IP_R2	2	573.015625	2	573.784241	1145.55393	-0.52205	-0.00029954	-0.30283	-0.00017376	-0.82487	-0.0004733	573.784150619098	58.239	0.70934	58.988	58.629	59.338	0.74894					29	13	3	0	0	0	0.91909	1	22032	22032		13.906	13.906	1	9240800	+		28677	18050	20456	20622	28097	28097					-0.013025182627416143
LAYDKLAAL	9	Unmodified	_LAYDKLAAL_					0	0	0			REV__nc|ENSG00000008869|Q9P2D3-3|HEATR5B	REV__nc|ENSG00000008869|Q9P2D3-3|HEATR5B	MULTI-MSMS	A375_MHC_IP_R1	1	489.68701171875	2	489.286943	976.559333	-0.34694	-0.00016975	0.24353	0.00011916	-0.10341	-5.0598E-05	489.28698164934616	80.014	0.51054	80.014	79.728	80.238	0					21	9	3	0	0	0	0.22013	1	29191	29191		36.506	0.37917	1	7710200	+		28678	16181	20457	20623	28098	28098					0.07011528591374372
LAYESKHL	8	Unmodified	_LAYESKHL_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MULTI-SECPEP	A375_MHC_IP_R2	2	481.16107177734375	2	480.761092	959.507631	-0.56125	-0.00026983	0.02809	1.3505E-05	-0.53316	-0.00025632	480.7614164189956	73.101	0.81512	73.836	73.53	74.345	0.73541					23	15	2	0	0	0	0.91495	1	27774	27774		24.674	0	1	1307300			28679	4134	20458	20624	28099	28099					0.026257848974637454
LAYHYLQV	8	Unmodified	_LAYHYLQV_					0	0	0		DLGAP4|p.G337D|1|0.43|ENSG00000080845|chr20:36436119-36436119|G/A|missense_variant;nc|ENSG00000080845|Q9Y2H0-1|DLGAP4;ENSG00000080845|ENST00000339266|DLGAP4	DLGAP4|p.G337D|1|0.43|ENSG00000080845|chr20:36436119-36436119|G/A|missense_variant	DLGAP4|p.G337D|1|0.43|ENSG00000080845|chr20:36436119-36436119|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	504.1717529296875	2	503.77146	1005.52837	-0.23326	-0.00011751	0.85995	0.00043322	0.6267	0.00031571	503.7718169350101	110.67	0.66363	110.67	110.39	111.05	0					27	12	3	0	0	0	0.85124	1	40584	40584		19.439	0.18201	1	5496700			28680	754	20459	20625	28100	28100					0.02582375277143001
LAYHYLQV	8	Unmodified	_LAYHYLQV_					0	0	0		DLGAP4|p.G337D|1|0.43|ENSG00000080845|chr20:36436119-36436119|G/A|missense_variant;nc|ENSG00000080845|Q9Y2H0-1|DLGAP4;ENSG00000080845|ENST00000339266|DLGAP4	DLGAP4|p.G337D|1|0.43|ENSG00000080845|chr20:36436119-36436119|G/A|missense_variant	DLGAP4|p.G337D|1|0.43|ENSG00000080845|chr20:36436119-36436119|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	503.77146	1005.52837	-0.52718	-0.00026558	1.3319	0.00067097	0.80472	0.00040539	503.7720385270889	109.93	0.71426	110.68	110.28	111	0.74683	0.0043464	0.00027469	NaN	19.439	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6369800			28681	754	20459	20625							0.02582375277143001
LAYNQLSHSSL	11	Unmodified	_LAYNQLSHSSL_					0	0	0			REV__TMC7|p.R91Q|2|0.33|ENSG00000170537|chr16:19009376-19009376|G/A|missense_variant	REV__TMC7|p.R91Q|2|0.33|ENSG00000170537|chr16:19009376-19009376|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	412.1396484375	3	411.547177	1231.6197	0.0030095	1.2385E-06	3.2336	0.0013308	3.2366	0.001332	412.21826311762504	31.909	0.7107	32.646	32.198	32.909	0.73691					24	13	3	0	0	0	0.52598	1	11315	11315		17.863	5.6356	1	2338200	+		28682	28127	20460	20626	28101	28101					0.013155941838249419
LAYSQLSP	8	Unmodified	_LAYSQLSP_					0	0	0		ENSG00000225968|ENST00000424383|ELFN1	ENSG00000225968|ENST00000424383|ELFN1	ENSG00000225968|ENST00000424383|ELFN1	MSMS	A375_MHC_IP_R1	1	439.6535949707031	2	439.734543	877.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.568	1	65.568	65.068	66.068	0								0	0	0	0.16876	1	23740	23740		18.135	1.1927	1				28683	9701	20461	20627	28102	28102					0.010904071148047478
LCCCCNCCCGH	11	Unmodified	_LCCCCNCCCGH_					0	0	0		ENSG00000147570|ENST00000276570|DNAJC5B	ENSG00000147570|ENST00000276570|DNAJC5B	ENSG00000147570|ENST00000276570|DNAJC5B	MSMS	A375_MHC_IP_R1	1	581.0973510742188	2	581.148388	1160.28222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.837	1	93.837	93.337	94.337	0								0	0	0	0.1636	1	34492	34492		0	0	1				28684	5692	20462	20628	28103	28103					-0.29150677810048364
LCCGSSCG	8	Unmodified	_LCCGSSCG_					0	0	0			REV__nc|ENSG00000141298|Q76I76|SSH2	REV__nc|ENSG00000141298|Q76I76|SSH2	MULTI-SECPEP	A375_MHC_IP_R1	1	729.6360473632812	1	729.236443	728.229166	-0.91037	-0.00066388	0.36687	0.00026754	-0.5435	-0.00039634	729.236547729094	144.18	0.17105	144.18	144.08	144.25	0					6	3	2	0	0	0	0.972	1	55304	55304		0.69038	0	1	2412400	+		28685	19254	20463	20629	28104	28104					-0.1458190494288374
LCCGSSCG	8	Unmodified	_LCCGSSCG_					0	0	0			REV__nc|ENSG00000141298|Q76I76|SSH2	REV__nc|ENSG00000141298|Q76I76|SSH2	MULTI-SECPEP	A375_MHC_IP_R2	2	729.635986328125	1	729.236443	728.229166	-0.61259	-0.00044672	0.12094	8.8194E-05	-0.49165	-0.00035853	729.2364166385398	144.22	0.19879	144.25	144.12	144.32	0.024414					6	3	2	0	0	0	0.972	1	56349	56349		0.69038	0	1	4269200	+		28686	19254	20463	20629	28105	28105					-0.1458190494288374
LCCLRFSAFL	10	Unmodified	_LCCLRFSAFL_					0	0	0		ENST00000474436.1_1_9:35089091-35089349:-|nuORF	ENST00000474436.1_1_9:35089091-35089349:-|nuORF	ENST00000474436.1_1_9:35089091-35089349:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	587.233154296875	2	586.80138	1171.58821	-0.19653	-0.00011532	3.2499	0.001907	3.0534	0.0017917	586.8042511550211	128.56	0.15044	128.56	128.43	128.58	0					4	2	2	0	0	0	0.71118	1	49376	49376		7.2892	0.56607	1	1571900			28687	12405	20464	20630	28106	28106					0.009276066245092807
LCEPARYWR	9	Unmodified	_LCEPARYWR_					0	0	0			REV__nc|ENSG00000080823|Q9UQ07-5|MOK	REV__nc|ENSG00000080823|Q9UQ07-5|MOK	MULTI-MSMS	A375_MHC_IP_R2	2	398.60003662109375	3	398.534326	1192.58115	-0.22684	-9.0405E-05	0.14988	5.9733E-05	-0.076962	-3.0672E-05	398.5344674627038	36.24	0.35623	37.011	36.901	37.258	0.7709					9	6	2	0	0	0	0.69674	1	13217	13217		4.5289	0.94181	1	1149400	+		28688	16758	20465	20631	28107	28107					-0.007439899317205345
LCEPETALAVD	11	Unmodified	_LCEPETALAVD_					0	0	0			REV__ENSG00000180357|ENST00000326648|ZNF609	REV__ENSG00000180357|ENST00000326648|ZNF609	MSMS	A375_MHC_IP_R1	1	387.41802978515625	3	387.52164	1159.54309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.258	1	37.258	36.758	37.758	0								0	0	0	0.16302	1	12546	12546		1.2148	0	1		+		28689	21609	20466	20632	28108	28108					-0.03029965427708703
LCEPETALAVD	11	Unmodified	_LCEPETALAVD_					0	0	0			REV__ENSG00000180357|ENST00000326648|ZNF609	REV__ENSG00000180357|ENST00000326648|ZNF609	MSMS	A375_MHC_IP_R1	1	387.4453125	3	387.52164	1159.54309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.286	1	37.286	36.786	37.786	0								0	0	0	0.16302	1	12556	12556		1.2148	0	1		+		28690	21609	20466	20632	28109	28109					-0.03029965427708703
LCGCPSMDDY	10	Unmodified	_LCGCPSMDDY_					0	0	0		ENST00000552973.1_1_13:52722507-52730359:-|nuORF	ENST00000552973.1_1_13:52722507-52730359:-|nuORF	ENST00000552973.1_1_13:52722507-52730359:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	552.64453125	2	552.195753	1102.37695	-0.61621	-0.00034027	0.75859	0.00041889	0.14238	7.8622E-05	552.1964655938353	53.242	0.50696	53.242	53.048	53.555	0					20	9	3	0	0	0	0.71245	1	18955	18955		6.7232	0.96273	1	1934700			28691	13395	20467	20633	28110	28110					-0.1701405819953834
LCGWLLRPPP	10	Unmodified	_LCGWLLRPPP_					0	0	0			REV__nc|ENSG00000196166|Q6ZUL3-2|LINC03042	REV__nc|ENSG00000196166|Q6ZUL3-2|LINC03042	MSMS	A375_MHC_IP_R1	1	384.6083068847656	3	384.551317	1150.63212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.785	1	30.785	30.285	31.285	0								0	0	0	0.14601	1	9815	9815		16.566	1.7276	1		+		28692	27434	20468	20634	28111	28111					0.06282959113150355
LCHLFSLW	8	Unmodified	_LCHLFSLW_					0	0	0			REV__ENST00000381396.9_1_16:19535357-19543792:+|nuORF	REV__ENST00000381396.9_1_16:19535357-19543792:+|nuORF	MSMS	A375_MHC_IP_R1	1	509.6899108886719	2	509.762581	1017.51061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.714	1	63.714	63.214	64.214	0								0	0	0	0.16876	1	23040	23040		28.173	4.1527	1		+		28693	24234	20469	20635	28112	28112					0.0025533675063798
LCINTVGSYH	10	Unmodified	_LCINTVGSYH_					0	0	0		nc|ENSG00000163520|P98095|FBLN2;ENSG00000163520|ENST00000404922|FBLN2	nc|ENSG00000163520|P98095|FBLN2	nc|ENSG00000163520|P98095|FBLN2	MULTI-MSMS	A375_MHC_IP_R2	2	369.5841979980469	3	369.51482	1105.52263	0.0035865	1.3253E-06	0.41897	0.00015481	0.42255	0.00015614	369.51487017265003	19.277	0.55756	19.88	19.683	20.241	0.60308					15	10	2	0	0	0	0.63336	1	5885	5885		12.228	6.4442	1	2543900			28694	6676	20470	20636	28113	28113					-0.02591091296835657
LCKKGKGG	8	Unmodified	_LCKKGKGG_					0	0	0			REV__ENSG00000180537|ENST00000488300|RNF182	REV__ENSG00000180537|ENST00000488300|RNF182	MSMS	A375_MHC_IP_R1	1	395.9250183105469	2	395.733823	789.453093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.982	1	21.982	21.482	22.482	0								0	0	0	0.16876	1	5851	5851		0	0	1		+		28695	21618	20471	20637	28114	28114					0.049944945450761224
LCKYFKDSR	9	Unmodified	_LCKYFKDSR_					0	0	0		nc|ENSG00000290798|Q9H1B4-5|NXF5;nc|ENSG00000290798|Q9H1B4-4|NXF5;nc|ENSG00000290798|Q9H1B4-6|NXF5;nc|ENSG00000290798|Q9H1B4-2|NXF5;nc|ENSG00000290798|Q9H1B4|NXF5	nc|ENSG00000290798|Q9H1B4-5|NXF5	nc|ENSG00000290798|Q9H1B4-5|NXF5	MULTI-MSMS	A375_MHC_IP_R1	1	387.2681579589844	3	387.202465	1158.58556	0.12339	4.7776E-05	0.66765	0.00025852	0.79104	0.00030629	387.20260296806464	36.285	0.65941	36.285	35.881	36.541	0					35	12	5	0	0	0	0.64136	1	12131	12131		12.241	4.7636	1	4599800			28696	14958	20472	20638	28115	28115					0.012614744912070819
LCLELVARSV	10	Unmodified	_LCLELVARSV_					0	0	0			REV__nc|ENSG00000198589|P50851-2|LRBA	REV__nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	A375_MHC_IP_R1	1	367.624267578125	3	368.214482	1101.62162	0.21144	7.7857E-05	-0.4822	-0.00017755	-0.27075	-9.9696E-05	368.54840062896915	25.486	0.3067	25.486	25.306	25.613	0					7	5	2	0	0	0	0.78163	1	7409	7409		30.431	8.8413	1	1880600	+		28697	22386	20473	20639	28116	28116					0.07486931668063335
LCLVNLTD	8	Unmodified	_LCLVNLTD_					0	0	0			REV__ENST00000380629.6_1_8:26265567-26265783:+|nuORF	REV__ENST00000380629.6_1_8:26265567-26265783:+|nuORF	MSMS	A375_MHC_IP_R2	2	445.63427734375	2	445.736228	889.457904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.85	1	110.59	110.09	111.09	0.74684								0	0	0	0.16876	1	41446	41446		0.79363	0	1		+		28698	24218	20474	20640	28117	28117					0.008753338971473568
LCMVQQLDL	9	Unmodified	_LCMVQQLDL_					0	0	0			REV__ENST00000527982.1_1_11:251741-251975:+|nuORF	REV__ENST00000527982.1_1_11:251741-251975:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	532.16845703125	2	531.769745	1061.52494	-1.0797	-0.00057418	-0.0083848	-4.4588E-06	-1.0881	-0.00057863	531.7692979511347	59.251	0.75934	59.998	59.742	60.501	0.74714					28	14	3	0	0	0	0.46045	1	22420	22420		36.127	8.4982	1	4616100	+		28699	25796	20475	20641	28118	28118					-0.0033637888336670585
LCPRPEIDEI	10	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))PRPEIDEI_	LC(1)PRPEIDEI		LC(56)PRPEIDEI		0	1	0		ENST00000558588.5_1_15:40583969-40599873:-|nuORF;nc|ENSG00000137841|Q00722-3|PLCB2;nc|ENSG00000137841|Q00722-2|PLCB2;ENSG00000137841|ENST00000260402|PLCB2	ENST00000558588.5_1_15:40583969-40599873:-|nuORF	ENST00000558588.5_1_15:40583969-40599873:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	621.7685546875	2	621.313363	1240.61217	-0.60302	-0.00037467	0.098916	6.1458E-05	-0.50411	-0.00031321	621.3133633835167	84.811	1.4236	85.547	85.171	86.595	0.73602					87	27	5	0	0	0	0.13478	1	32326	32326		56.177	8.4284	1	50604000			28700	4926	20476	20642	28119	28119	32				0.001491185918894189
LCPSQCTCDY	10	Unmodified	_LCPSQCTCDY_					0	0	0		ENSG00000183423|ENST00000594814|LRIT3;nc|ENSG00000183423|Q3SXY7-2|LRIT3	ENSG00000183423|ENST00000594814|LRIT3	ENSG00000183423|ENST00000594814|LRIT3	MSMS	A375_MHC_IP_R1	1	566.7166137695312	2	566.709027	1131.4035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.466	1	53.466	52.966	53.966	0								0	0	0	0.15372	1	19063	19063		8.7454	1.1365	1				28701	8492	20477	20643	28120	28120					-0.15694369308221212
LCPTSELLKL	10	Unmodified	_LCPTSELLKL_					0	0	0		ENST00000607016.1_1_6:34253564-34253663:-|nuORF	ENST00000607016.1_1_6:34253564-34253663:-|nuORF	ENST00000607016.1_1_6:34253564-34253663:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	372.5951843261719	3	372.88262	1115.62603	0.60933	0.00022721	1.0835	0.00040404	1.6929	0.00063124	372.88305962493433	48.096	0.3046	48.096	47.97	48.274	0					7	5	2	0	0	0	0.94102	1	16914	16914		1.4551	1.2193	1	612800			28702	13916	20478	20644	28121	28121					0.07284396090949485
LCQVNYSFY	9	Unmodified	_LCQVNYSFY_					0	0	0		ENSG00000127311|ENST00000247815|HELB	ENSG00000127311|ENST00000247815|HELB	ENSG00000127311|ENST00000247815|HELB	MULTI-MSMS	A375_MHC_IP_R1	1	570.1614379882812	2	568.757692	1135.50083	-0.31749	-0.00018057	-3.551	-0.0020197	-3.8685	-0.0022003	568.7541009818462	40.267	0.81467	40.267	39.948	40.762	0					55	15	6	0	0	0	0.35581	1	13799	13799		26.884	1.8927	1	30858000			28703	4082	20479	20645	28122	28122					-0.06149896045394598
LCRLLEWVK	9	Unmodified	_LCRLLEWVK_					0	0	0		ENSG00000280094|ENST00000623530|OR1B1	ENSG00000280094|ENST00000623530|OR1B1	ENSG00000280094|ENST00000623530|OR1B1	MULTI-SECPEP	A375_MHC_IP_R1	1	579.7490234375	2	580.336444	1158.65834	-0.50341	-0.00029215	1.5849	0.00091979	1.0815	0.00062765	580.3374560143583	136.23	0.51343	136.23	136.05	136.56	0					16	9	2	0	0	0	0.8028	1	52510	52510		1.8442	0	1	738980			28704	10045	20480	20646	28123	28123					0.0853522828460882
LCSTQERHELK	11	Unmodified	_LCSTQERHELK_					0	0	0		ENST00000463892.1_1_10:25011456-25011522:-|nuORF	ENST00000463892.1_1_10:25011456-25011522:-|nuORF	ENST00000463892.1_1_10:25011456-25011522:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	449.9089660644531	3	448.562721	1342.66633	-0.51767	-0.00023221	0.076256	3.4206E-05	-0.44141	-0.000198	448.5640525023221	34.816	0.60582	35.58	35.273	35.878	0.76338					31	11	5	0	0	0	0.72801	1	12613	12613		5.8681	1.462	1	3913600			28705	12217	20481	20647	28124	28124					0.008707107434474892
LCTLSGDEPV	10	Unmodified	_LCTLSGDEPV_					0	0	0			REV__nc|ENSG00000133488|Q9UDX3-2|SEC14L4	REV__nc|ENSG00000133488|Q9UDX3-2|SEC14L4	MULTI-SECPEP	A375_MHC_IP_R1	1	517.7109375	2	517.247157	1032.47976	-0.45463	-0.00023516	0.24687	0.00012769	-0.20776	-0.00010746	517.2469745437138	33.682	0.20076	33.682	33.547	33.748	0					8	3	3	0	0	0	0.88918	1	11011	11011		18.146	7.963	1	1024700	+		28706	18721	20482	20648	28125	28125					-0.03517906144929839
LCVLRRLS	8	Unmodified	_LCVLRRLS_					0	0	0		ENST00000451104.6_1_10:3209230-3214964:-|nuORF;ENSG00000107959|ENST00000224949|PITRM1;nc|ENSG00000107959|Q5JRX3-2|PITRM1	ENST00000451104.6_1_10:3209230-3214964:-|nuORF	ENST00000451104.6_1_10:3209230-3214964:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	479.6770935058594	2	480.294579	958.574605	-0.52428	-0.00025181	1.2587	0.00060455	0.73442	0.00035274	480.2955725925465	132.05	0.40425	132.24	132.05	132.46	0.18953					11	7	2	0	0	0	0.972	1	51926	51926		2.5775	0	1	9936800			28707	2774	20483	20649	28126	28126					0.0936611690758582
LCVPECVLAVC	11	Unmodified	_LCVPECVLAVC_					0	0	0			REV__ENSG00000212657|ENST00000391352|KRTAP16-1	REV__ENSG00000212657|ENST00000391352|KRTAP16-1	MULTI-SECPEP	A375_MHC_IP_R1	1	574.6378173828125	2	574.779256	1147.54396	-0.13661	-7.8523E-05	-0.17044	-9.7966E-05	-0.30705	-0.00017649	574.7793468242862	43.557	0.45663	43.557	43.3	43.757	0					13	8	2	0	0	0	0.94285	1	15059	15059		9.3831	3.1773	1	3243600	+		28708	22606	20484	20650	28127	28127					-0.02391165583981092
LDADKFRDFF	10	Unmodified	_LDADKFRDFF_					0	0	0		nc|ENSG00000101452|Q9H5Z1-2|DHX35;ENSG00000101452|ENST00000252011|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	MULTI-SECPEP	A375_MHC_IP_R2	2	424.6274108886719	3	425.211906	1272.61389	-0.22176	-9.4293E-05	0.90592	0.00038521	0.68417	0.00029092	425.2122967865788	40.231	0.25357	41.006	40.879	41.133	0.77451					6	4	2	0	0	0	0.89761	1	14872	14872		14.957	0.78643	1	1545400			28709	2299	20485	20651	28128	28128					-0.011515043278677695
LDAEHDDP	8	Unmodified	_LDAEHDDP_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-SECPEP	A375_MHC_IP_R2	2	910.9689331054688	1	911.374117	910.36684	-0.36184	-0.00032977	2.7495	0.0025058	2.3876	0.002176	911.3775177923369	123.27	1.0622	123.65	123.48	124.54	0.3766					26	20	2	0	0	0	0.972	1	47371	47371		13.508	4.1604	1	52642000	+		28710	18320	20486	20652	28129	28129					-0.09192838546618987
LDAGQNWEE	9	Unmodified	_LDAGQNWEE_					0	0	0			REV__UNC13C|p.K658E|1|0.31|ENSG00000137766|chr15:54014875-54014875|A/G|missense_variant	REV__UNC13C|p.K658E|1|0.31|ENSG00000137766|chr15:54014875-54014875|A/G|missense_variant	MSMS	A375_MHC_IP_R2	2	531.1929321289062	2	531.230353	1060.44615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.694	1	64.434	63.934	64.934	0.74022								0	0	0	0.15273	1	24151	24151		17.113	0.1706	1		+		28711	28956	20487	20653	28130	28130					-0.0816519159247946
LDAHTLEFFE	10	Unmodified	_LDAHTLEFFE_					0	0	0			REV__ENSG00000179454|ENST00000396128|KLHL28	REV__ENSG00000179454|ENST00000396128|KLHL28	MULTI-SECPEP	A375_MHC_IP_R2	2	610.584228515625	2	611.292953	1220.57135	-0.57381	-0.00035077	-0.23815	-0.00014558	-0.81197	-0.00049635	611.2925380952294	106.84	0.45687	107.6	107.29	107.75	0.75977					12	8	2	0	0	0	0.92957	1	40291	40291		6.2058	0.47393	1	1116800	+		28712	21564	20488	20654	28131	28131					-0.03010899456126026
LDAKIARY	8	Unmodified	_LDAKIARY_					0	0	0		nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1	nc|ENSG00000102038|P28370-2|SMARCA1	nc|ENSG00000102038|P28370-2|SMARCA1	MSMS	A375_MHC_IP_R1	1	475.3037109375	2	475.276909	948.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.622	1	23.622	23.122	24.122	0								0	0	0	0.16876	1	6523	6523		9.3474	2.9933	1				28713	2352	20489	20655	28132	28132					0.06293777651410437
LDAKKENIPV	10	Unmodified	_LDAKKENIPV_					0	0	0			REV__nc|ENSG00000073417|O60658-6|PDE8A	REV__nc|ENSG00000073417|O60658-6|PDE8A	MULTI-SECPEP	A375_MHC_IP_R1	1	375.9694519042969	3	376.220401	1125.63937	0.074272	2.7942E-05	1.2787	0.00048107	1.353	0.00050902	376.22077196200416	23.441	0.25562	23.441	23.278	23.533	0					8	4	3	0	0	0	0.92227	1	6410	6410		5.0475	4.5416	1	2963500	+		28714	16619	20490	20656	28133	28133					0.08157970194565678
LDAKYIPFRRE	11	Unmodified	_LDAKYIPFRRE_					0	0	0			REV__ENSG00000115207|ENST00000264720|GTF3C2	REV__ENSG00000115207|ENST00000264720|GTF3C2	MSMS	A375_MHC_IP_R1	1	704.3897094726562	2	704.390793	1406.76703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.96	1	122.96	122.46	123.46	0								0	0	0	0.16112	1	45875	45875		12.873	0.63195	1		+		28715	17861	20491	20657	28134	28134					0.07992110788586615
LDAMLLQVSP	10	Unmodified	_LDAMLLQVSP_					0	0	0		tr|U7SUD2|U7SUD2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01190PE=3SV=1	tr|U7SUD2|U7SUD2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01190PE=3SV=1	tr|U7SUD2|U7SUD2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01190PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	362.64105224609375	3	362.86697	1085.57908	0.091577	3.323E-05	1.6092	0.00058391	1.7007	0.00061714	362.86779353238484	24.711	0.25308	24.711	24.547	24.801	0					6	4	2	0	0	0	0.92957	1	7115	7115		3.3196	0	1	977500			28716	29760	20492	20658	28135	28135					0.03971536539847875
LDARHIKIQQ	10	Unmodified	_LDARHIKIQQ_					0	0	0		DNAH9|p.E1264K|2|0.35|ENSG00000007174|chr17:11689612-11689612|G/A|missense_variant	DNAH9|p.E1264K|2|0.35|ENSG00000007174|chr17:11689612-11689612|G/A|missense_variant	DNAH9|p.E1264K|2|0.35|ENSG00000007174|chr17:11689612-11689612|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	611.7566528320312	2	611.356754	1220.69895	-0.54979	-0.00033611	-0.87346	-0.00053399	-1.4232	-0.00087011	611.3560661309215	130.08	2.6346	130.08	129.5	132.13	0					205	51	7	0	0	0	0.71944	1	50522	50522		3.5965	0	1	1337400000			28717	775	20493	20659	28136	28136					0.09743285928584555
LDATNNFSY	9	Unmodified	_LDATNNFSY_					0	0	0		nc|ENSG00000170190|O15375-2|SLC16A5;ENSG00000170190|ENST00000329783|SLC16A5	nc|ENSG00000170190|O15375-2|SLC16A5	nc|ENSG00000170190|O15375-2|SLC16A5	MULTI-MSMS	A375_MHC_IP_R1	1	523.1900024414062	2	522.735271	1043.45599	-0.37065	-0.00019375	-0.24005	-0.00012548	-0.61071	-0.00031924	522.7350598075393	88.845	0.71046	88.845	88.51	89.221	0					24	13	2	0	0	0	0.64808	1	32687	32687		11.64	2.2929	1	3684900			28718	7480	20494	20660	28137	28137					-0.06400003587077663
LDATNNFSY	9	Unmodified	_LDATNNFSY_					0	0	0		nc|ENSG00000170190|O15375-2|SLC16A5;ENSG00000170190|ENST00000329783|SLC16A5	nc|ENSG00000170190|O15375-2|SLC16A5	nc|ENSG00000170190|O15375-2|SLC16A5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	522.735271	1043.45599	-0.37065	-0.00019375	-0.24005	-0.00012548	-0.61071	-0.00031924	522.7350598075393	88.845	0.71046	88.845	88.51	89.221	0	-0.086684	0.0001651	NaN	11.64	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3684900			28719	7480	20494	20660							-0.06400003587077663
LDAVISIIN	9	Unmodified	_LDAVISIIN_					0	0	0		tr|U7SJA1|U7SJA1_FUSNUXyloseisomerase-likeTIMbarreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02159PE=4SV=1	tr|U7SJA1|U7SJA1_FUSNUXyloseisomerase-likeTIMbarreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02159PE=4SV=1	tr|U7SJA1|U7SJA1_FUSNUXyloseisomerase-likeTIMbarreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02159PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	479.6846008300781	2	479.2844	956.554247	-0.68816	-0.00032982	1.4389	0.00068963	0.75072	0.00035981	479.28518620073885	132.37	0.55679	132.37	132.13	132.69	0					12	10	2	0	0	0	0.73363	1	51151	51151		10.824	0	1	2573800			28720	29449	20495	20661	28138	28138					0.07423224728768218
LDAVSLGIAW	10	Unmodified	_LDAVSLGIAW_					0	0	0			REV__nc|ENSG00000134333|P00338-4|LDHA	REV__nc|ENSG00000134333|P00338-4|LDHA	MULTI-MSMS	A375_MHC_IP_R1	1	523.1897583007812	2	522.78985	1043.56515	-0.69758	-0.00036469	0.091291	4.7726E-05	-0.60629	-0.00031696	522.7898577095385	84.842	0.71658	84.842	84.442	85.159	0					29	13	3	0	0	0	0.43117	1	31122	31122		32.305	6.9062	1	2165700	+		28721	27233	20496	20662	28139	28139					0.04510627103013576
LDAVSLGIAW	10	Unmodified	_LDAVSLGIAW_					0	0	0			REV__nc|ENSG00000134333|P00338-4|LDHA	REV__nc|ENSG00000134333|P00338-4|LDHA	MULTI-SECPEP	A375_MHC_IP_R1	1	522.2160034179688	2	522.78985	1043.56515	-0.69758	-0.00036469	0.091291	4.7726E-05	-0.60629	-0.00031696	522.7898577095385	84.842	0.71658	84.842	84.442	85.159	0					29	13	3	0	0	0	0.61429	1	31165	31165		24.021	3.5669	1	2165700	+		28722	27233	20496	20662	28140	28140					0.04510627103013576
LDAYKVSSV	9	Unmodified	_LDAYKVSSV_					0	0	0			REV__tr|U7SIU5|U7SIU5_FUSNUArginine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=argSPE=3SV=1	REV__tr|U7SIU5|U7SIU5_FUSNUArginine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=argSPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	490.6763000488281	2	491.266207	980.517862	-0.42629	-0.00020942	0.14661	7.2026E-05	-0.27967	-0.00013739	491.2662495733278	90.524	0.66139	91.258	90.904	91.566	0.73451					22	12	3	0	0	0	0.65246	1	34366	34366		15.847	0	1	3146400	+		28723	28218	20497	20663	28141	28141					0.026823478320466165
LDCCCCCCCEE	11	Unmodified	_LDCCCCCCCEE_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	A375_MHC_IP_R1	1	613.5806274414062	2	613.642801	1225.27105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.61	1	119.61	119.11	120.11	0								0	0	0	0.16353	1	44224	44224		0.35063	0.35063	1				28724	7469	20498	20664	28142	28142					-0.33257544694833996
LDCDEQYNES	10	Unmodified	_LDCDEQYNES_					0	0	0			REV__N4BP2|p.N733Y|1|0.25|ENSG00000078177|chr4:40120308-40120308|A/T|missense_variant	REV__N4BP2|p.N733Y|1|0.25|ENSG00000078177|chr4:40120308-40120308|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	608.62744140625	2	608.22715	1214.43975	-0.32133	-0.00019544	0.23222	0.00014124	-0.089111	-5.42E-05	608.2275136084334	46.355	0.50899	47.12	46.855	47.364	0.76518					22	9	3	0	0	0	0.92957	1	17358	17358		3.2813	0	1	4240800	+		28725	27075	20499	20665	28143	28143					-0.15889497606167424
LDCLRRGSGPE	11	Unmodified	_LDCLRRGSGPE_					0	0	0			REV__PBRM1|p.E1214Rfs*6|1|0.21|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant	REV__PBRM1|p.E1214Rfs*6|1|0.21|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	400.941650390625	3	401.536395	1201.58736	-0.26102	-0.00010481	1.258	0.00050515	0.99702	0.00040034	401.53662500771594	55.88	0.45691	55.88	55.635	56.092	0					19	8	3	0	0	0	0.9836	1	20027	20027		6.2344	0.93747	1	1577600	+		28726	20428	20500	20666	28144	28144					-0.00537516490840062
LDCLRRGSGPE	11	Unmodified	_LDCLRRGSGPE_					0	0	0			REV__PBRM1|p.E1214Rfs*6|1|0.21|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant	REV__PBRM1|p.E1214Rfs*6|1|0.21|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	400.94110107421875	3	401.536395	1201.58736	-0.14907	-5.9855E-05	0.56465	0.00022673	0.41558	0.00016687	401.87127078251933	55.05	0.56065	55.801	55.523	56.084	0.75075					15	10	2	0	0	0	0.99018	1	20833	20833		9.2438	0.79947	1	1275300	+		28727	20428	20500	20666	28145	28145					-0.00537516490840062
LDCRPFLAH	9	Unmodified	_LDCRPFLAH_					0	0	0		ENSG00000120875|ENST00000240100|DUSP4	ENSG00000120875|ENST00000240100|DUSP4	ENSG00000120875|ENST00000240100|DUSP4	MULTI-SECPEP	A375_MHC_IP_R1	1	357.91705322265625	3	357.851655	1070.53313	0.26914	9.6311E-05	-0.4894	-0.00017513	-0.22026	-7.8822E-05	357.8516266080829	35.626	0.56168	35.626	35.421	35.982	0					14	10	2	0	0	0	0.77834	1	11885	11885		1.0715	0.10919	1	1367300			28728	3692	20501	20667	28146	28146					0.0006893614825003169
LDCSLTFFV	9	Unmodified	_LDCSLTFFV_					0	0	0			REV__nc|ENSG00000091879|O15123-2|ANGPT2	REV__nc|ENSG00000091879|O15123-2|ANGPT2	MSMS	A375_MHC_IP_R2	2	522.67919921875	2	522.757161	1043.49977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.159	1	71.893	71.393	72.393	0.73421								0	0	0	0.1521	1	26987	26987		18.135	1.1927	1		+		28729	16959	20502	20668	28147	28147					-0.02024110414322422
LDCWRKIAGD	10	Unmodified	_LDCWRKIAGD_					0	0	0		ENST00000444439.1_1_7:54487838-54488018:+|nuORF	ENST00000444439.1_1_7:54487838-54488018:+|nuORF	ENST00000444439.1_1_7:54487838-54488018:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	588.2266235351562	2	588.79514	1175.57573	-0.26866	-0.00015819	-0.71816	-0.00042285	-0.98682	-0.00058103	588.7947497803411	103.57	0.56017	103.57	103.42	103.98	0					20	10	3	0	0	0	0.76274	1	38140	38140		43.772	16.144	1	2211300			28730	12016	20503	20669	28148	28148					-0.005037135141719773
LDCYCIAGL	9	Unmodified	_LDCYCIAGL_					0	0	0			REV__ENST00000466998.1_1_1:32042169-32043067:+|nuORF	REV__ENST00000466998.1_1_1:32042169-32043067:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	485.6426086425781	2	485.722264	969.429975	-0.49814	-0.00024196	-0.53782	-0.00026123	-1.036	-0.00050319	485.7221309915913	68.902	1.2149	69.637	69.07	70.285	0.73511					62	23	4	0	0	0	0.62719	1	26335	26335		13.508	0	1	20430000	+		28731	19329	20504	20670	28149	28149					-0.055963123545780036
LDDCNALEY	9	Unmodified	_LDDCNALEY_					0	0	0		ENSG00000170891|ENST00000307746|CYTL1	ENSG00000170891|ENST00000307746|CYTL1	ENSG00000170891|ENST00000307746|CYTL1	MSMS	A375_MHC_IP_R2	2	528.2159423828125	2	528.221139	1054.42773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.562	1	45.331	44.831	45.831	0.7691								0	0	0	0.15486	1	16635	16635		12.532	0	1				28732	7554	20505	20671	28150	28150					-0.09731069558688432
LDDCSWNY	8	Unmodified	_LDDCSWNY_					0	0	0			REV__ENSG00000145990|ENST00000379287|GFOD1	REV__ENSG00000145990|ENST00000379287|GFOD1	MSMS	A375_MHC_IP_R1	1	508.1664733886719	2	508.194925	1014.3753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.874	1	57.874	57.374	58.374	0								0	0	0	0.16876	1	20775	20775		5.7604	0.52976	1		+		28733	19509	20506	20672	28151	28151					-0.13131607901652842
LDDDDGVP	8	Unmodified	_LDDDDGVP_					0	0	0		ENSG00000180447|ENST00000298743|GAS1	ENSG00000180447|ENST00000298743|GAS1	ENSG00000180447|ENST00000298743|GAS1	MULTI-SECPEP	A375_MHC_IP_R1	1	845.9200439453125	1	845.352319	844.345042	-0.9833	-0.00083124	-2.9651	-0.0025066	-3.9484	-0.0033378	845.3539155275354	123.51	0.20258	123.51	123.38	123.59	0					5	3	2	0	0	0	0.972	1	46163	46163		5.7604	3.4577	1	8361500			28734	8297	20507	20673	28152	28152					-0.08335643295185946
LDDEQPAI	8	Unmodified	_LDDEQPAI_					0	0	0		ENSG00000188505|ENST00000339852|NCCRP1	ENSG00000188505|ENST00000339852|NCCRP1	ENSG00000188505|ENST00000339852|NCCRP1	MSMS	A375_MHC_IP_R1	1	450.69970703125	2	450.71909	899.423627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.962	1	44.962	44.462	45.462	0								0	0	0	0.16876	1	15709	15709		9.3474	2.9933	1				28735	8910	20508	20674	28153	28153					-0.030107909901062158
LDDFLDGDVF	10	Unmodified	_LDDFLDGDVF_					0	0	0		ZC3H7B|p.S256L|1|0.15|ENSG00000100403|chr22:41339142-41339142|C/T|missense_variant	ZC3H7B|p.S256L|1|0.15|ENSG00000100403|chr22:41339142-41339142|C/T|missense_variant	ZC3H7B|p.S256L|1|0.15|ENSG00000100403|chr22:41339142-41339142|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	577.673828125	2	578.263862	1154.51317	-0.41114	-0.00023775	-4.315	-0.0024952	-4.7261	-0.002733	578.261709826116	97.157	0.25508	97.913	97.822	98.077	0.75586					5	4	2	0	0	0	0.69172	1	36873	36873		19.257	0	1	933860			28736	30189	20509	20675	28154	28154					-0.05790581101382486
LDDGPEQDA	9	Unmodified	_LDDGPEQDA_					0	0	0			REV__ENST00000373324.8_1_9:130249993-130257618:+|nuORF	REV__ENST00000373324.8_1_9:130249993-130257618:+|nuORF	MSMS	A375_MHC_IP_R2	2	480.1385803222656	2	480.201261	958.38797	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.214	1	66.953	66.453	67.453	0.73811								0	0	0	0.15486	1	25095	25095		7.2892	0.93513	1		+		28737	24091	20510	20676	28155	28155					-0.09288873237755979
LDDLGVRAYI	10	Unmodified	_LDDLGVRAYI_					0	0	0			REV__nc|ENSG00000165914|Q86TV6-2|TTC7B	REV__nc|ENSG00000165914|Q86TV6-2|TTC7B	MULTI-SECPEP	A375_MHC_IP_R1	1	567.6974487304688	2	567.811313	1133.60807	-0.29725	-0.00016878	0.41274	0.00023436	0.11549	6.5575E-05	567.8115596219151	98.076	1.0658	98.076	97.389	98.455	0					26	20	2	0	0	0	0.56504	1	35983	35983		41.84	30.345	1	1909600	+		28738	20636	20511	20677	28156	28156					0.04661397160452907
LDDLKKHTH	9	Unmodified	_LDDLKKHTH_					0	0	0			REV__CEP72|p.E512K|1|0.1|ENSG00000112877|chr5:640599-640599|G/A|missense_variant	REV__CEP72|p.E512K|1|0.1|ENSG00000112877|chr5:640599-640599|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	369.9363708496094	3	369.536612	1105.58801	-0.02364	-8.7358E-06	0.32628	0.00012057	0.30264	0.00011184	369.5366276864466	38.197	0.56144	38.971	38.739	39.3	0.77451					32	10	5	0	0	0	0.63327	1	14023	14023		17.443	2.1942	1	13736000	+		28739	15640	20512	20678	28157	28157					0.03943646220500341
LDDLKKKV	8	Unmodified	_LDDLKKKV_					0	0	0		ATP1A3|p.E28K|1|0.34|ENSG00000105409|chr19:41988487-41988487|C/T|missense_variant	ATP1A3|p.E28K|1|0.34|ENSG00000105409|chr19:41988487-41988487|C/T|missense_variant	ATP1A3|p.E28K|1|0.34|ENSG00000105409|chr19:41988487-41988487|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	480.3035888671875	2	479.800217	957.585882	-0.82481	-0.00039574	-0.1263	-6.0599E-05	-0.95111	-0.00045634	479.8001076019606	18.955	0.28076	19.559	19.452	19.733	0.60308					12	5	3	0	0	0	0.77797	1	5840	5840		2.3027	0	1	26226000			28740	207	20513	20679	28158	28158					0.1053921748269886
LDDLVYKR	8	Unmodified	_LDDLVYKR_					0	0	0			REV__ENSG00000180104|ENST00000512944|EXOC3	REV__ENSG00000180104|ENST00000512944|EXOC3	MSMS	A375_MHC_IP_R2	2	511.183349609375	2	511.287474	1020.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.02	1	129.26	128.76	129.76	0.23946								0	0	0	0.16876	1	50694	50694		16.942	0	1		+		28741	21596	20514	20680	28159	28159					0.05093742960275449
LDDNSEEEME	10	Unmodified	_LDDNSEEEME_					0	0	0		ENSG00000168724|ENST00000648817|DNAJC21;nc|ENSG00000168724|Q5F1R6-3|DNAJC21;nc|ENSG00000168724|Q5F1R6-2|DNAJC21;DNAJC21|p.P365S|1|0.13|ENSG00000168724|chr5:34944976-34944976|C/T|missense_variant	ENSG00000168724|ENST00000648817|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	MSMS	A375_MHC_IP_R2	2	605.8181762695312	2	605.72444	1209.43433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.708	1	93.447	92.947	93.947	0.73902								0	0	0	0.15451	1	35253	35253		6.2058	1.4498	1				28742	7337	20515	20681	28160	28160					-0.1620122118861218
LDDNTCFND	9	Unmodified	_LDDNTCFND_					0	0	0		nc|ENSG00000145332|Q9P2G9-2|KLHL8;ENSG00000145332|ENST00000273963|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	MSMS	A375_MHC_IP_R2	2	528.6958618164062	2	528.700571	1055.38659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.85	1	71.584	71.084	72.084	0.73421								0	0	0	0.15486	1	26864	26864		12.532	0	1				28743	5552	20516	20682	28161	28161					-0.13888830598170898
LDDPAAAPV	9	Unmodified	_LDDPAAAPV_					0	0	0			REV__ENSG00000147649|ENST00000336273|MTDH	REV__ENSG00000147649|ENST00000336273|MTDH	MULTI-MSMS	A375_MHC_IP_R1	1	868.9822387695312	1	868.441074	867.433798	-0.14007	-0.00012164	-3.2222	-0.0027983	-3.3623	-0.0029199	868.4354361813542	117.79	0.15298	117.79	117.71	117.87	0					4	2	2	0	0	0	0.63811	1	43316	43316		12.532	0.29089	1	4117400			28744	19601	20517	20683	28162	28162					-0.0052218326486581645
LDDPVSPV	8	Unmodified	_LDDPVSPV_					0	0	0			REV__nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	REV__nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	MULTI-SECPEP	A375_MHC_IP_R2	2	841.1693725585938	1	841.430175	840.422899	-0.66575	-0.00056018	3.1039	0.0026117	2.4381	0.0020515	841.4335470394569	126.14	0.15252	126.44	126.33	126.48	0.2951					4	2	2	0	0	0	0.97144	1	49306	49306		14.582	5.2343	1	3530100	+		28745	18965	20518	20684	28163	28163					-0.003695856391345842
LDDTIETPDM	10	Unmodified	_LDDTIETPDM_					0	0	0			REV__ENST00000556335.1_1_14:86018043-86019103:+|nuORF	REV__ENST00000556335.1_1_14:86018043-86019103:+|nuORF	MSMS	A375_MHC_IP_R2	2	575.2039184570312	2	575.252637	1148.49072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.474	1	87.207	86.707	87.707	0.733								0	0	0	0.14862	1	32886	32886		20.454	1.1966	1		+		28746	26106	20519	20685	28164	28164					-0.07758548561332645
LDDTTQLPLL	10	Unmodified	_LDDTTQLPLL_					0	0	0		ENSG00000006071|ENST00000389817|ABCC8;nc|ENSG00000006071|Q09428-2|ABCC8	ENSG00000006071|ENST00000389817|ABCC8	ENSG00000006071|ENST00000389817|ABCC8	MSMS	A375_MHC_IP_R1	1	564.7571411132812	2	564.810979	1127.6074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.884	1	86.884	86.384	87.384	0								0	0	0	0.15451	1	31869	31869		10.824	4.6181	1				28747	907	20520	20686	28165	28165					0.04870557720778379
LDDWDRERYWR	11	Unmodified	_LDDWDRERYWR_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-SECPEP	A375_MHC_IP_R2	2	805.2299194335938	2	805.378946	1608.74334	-0.88496	-0.00071273	-0.85011	-0.00068466	-1.7351	-0.0013974	805.3783897198831	126.92	0.15181	127.18	127.06	127.21	0.26593					4	2	2	0	0	0	1.001	1	49674	49674		1.1933	0.9575	1	6418200			28748	3602	20521	20687	28166	28166					-0.036683547158645524
LDDWTANPRI	10	Unmodified	_LDDWTANPRI_					0	0	0		ENSG00000146192|ENST00000274963|FGD2;ENST00000464083.5_1_6:36973566-36981682:+|nuORF	ENSG00000146192|ENST00000274963|FGD2	ENSG00000146192|ENST00000274963|FGD2	MULTI-SECPEP	A375_MHC_IP_R2	2	401.2794494628906	3	400.871772	1199.59349	0.024637	9.8761E-06	0.55258	0.00022151	0.57722	0.00023139	400.8719420493501	41.988	0.254	42.763	42.659	42.913	0.77451					8	4	2	0	0	0	0.91556	1	15586	15586		1.5923	0.52082	1	819880			28749	5607	20522	20688	28167	28167					0.00167325012330366
LDDWVWDFY	9	Unmodified	_LDDWVWDFY_					0	0	0			REV__ENSG00000162032|ENST00000566339|SPSB3	REV__ENSG00000162032|ENST00000566339|SPSB3	MSMS	A375_MHC_IP_R2	2	629.7953491210938	2	629.774396	1257.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.192	1	92.931	92.431	93.431	0.73902								0	0	0	0.15486	1	35062	35062		8.5933	0.68312	1		+		28750	20230	20523	20689	28168	28168					-0.08422571001869983
LDDYNPINIG	10	Unmodified	_LDDYNPINIG_					0	0	0			REV__ENST00000526250.5_1_11:66259118-66263112:+|nuORF	REV__ENST00000526250.5_1_11:66259118-66263112:+|nuORF	MSMS	A375_MHC_IP_R2	2	567.26123046875	2	567.277303	1132.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.568	1	93.307	92.807	93.807	0.73902								0	0	0	0.14862	1	35202	35202		20.454	2.3186	1		+		28751	22868	20524	20690	28169	28169					-0.020914724902240778
LDDYNYFYF	9	Unmodified	_LDDYNYFYF_					0	0	0		ENST00000303406.4_3_12:54410833-54411064:+|nuORF	ENST00000303406.4_3_12:54410833-54411064:+|nuORF	ENST00000303406.4_3_12:54410833-54411064:+|nuORF	MSMS	A375_MHC_IP_R2	2	630.260498046875	2	630.266404	1258.51826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.042	1	82.785	82.285	83.285	0.74293								0	0	0	0.15486	1	31164	31164		7.2892	0	1				28752	10556	20525	20691	28170	28170					-0.10066277238775001
LDEAHVKGIF	10	Unmodified	_LDEAHVKGIF_					0	0	0			REV__ENSG00000171815|ENST00000306549|PCDHB1	REV__ENSG00000171815|ENST00000306549|PCDHB1	MULTI-SECPEP	A375_MHC_IP_R1	1	377.2731628417969	3	376.873113	1127.59751	0.32482	0.00012242	0.054837	2.0667E-05	0.37966	0.00014308	376.8730877766879	59.269	0.71126	59.269	58.99	59.701	0					34	13	5	0	0	0	0.83355	1	21309	21309		7.4771	0	1	7701100	+		28753	21099	20526	20692	28171	28171					0.038814145060541705
LDEATSVV	8	Unmodified	_LDEATSVV_					0	0	0			REV__nc|ENSG00000173706|Q9ULI3-2|HEG1	REV__nc|ENSG00000173706|Q9ULI3-2|HEG1	MULTI-SECPEP	A375_MHC_IP_R1	1	416.5958557128906	2	417.216183	832.417813	0.21569	8.999E-05	-1.3634	-0.00056885	-1.1477	-0.00047886	417.2158765567618	60.274	0.71287	60.274	59.905	60.618	0					28	13	3	0	0	0	0.972	1	21770	21770		0	0	1	3113100	+		28754	21243	20527	20693	28172	28172					-0.005098895017454197
LDEEGSSEPV	10	Unmodified	_LDEEGSSEPV_					0	0	0			REV__ENST00000375254.7_1_1:19433078-19433150:-|nuORF	REV__ENST00000375254.7_1_1:19433078-19433150:-|nuORF	MSMS	A375_MHC_IP_R2	2	531.205078125	2	531.235301	1060.45605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.141	1	84.88	84.38	85.38	0.73962								0	0	0	0.15158	1	31982	31982		14.838	4.6549	1		+		28755	24125	20528	20694	28173	28173					-0.07176048377732513
LDEERVGPV	9	Unmodified	_LDEERVGPV_					0	0	0			REV__ENSG00000149634|ENST00000372519|SPATA25	REV__ENSG00000149634|ENST00000372519|SPATA25	MULTI-MSMS	A375_MHC_IP_R1	1	507.241943359375	2	507.266739	1012.51892	-0.32504	-0.00016488	2.8767	0.0014592	2.5516	0.0012944	507.26790723144	89.216	0.86418	89.216	88.764	89.628	0					25	16	2	0	0	0	0.60101	1	32860	32860		14.838	0	1	1007500	+		28756	19692	20529	20695	28174	28174					0.013165622009637445
LDEGCEQTL	9	Unmodified	_LDEGCEQTL_					0	0	0			REV__ENST00000565117.1_1_16:22343362-22345018:+|nuORF	REV__ENST00000565117.1_1_16:22343362-22345018:+|nuORF	MSMS	A375_MHC_IP_R1	1	504.1766662597656	2	504.221139	1006.42773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.951	1	98.951	98.451	99.451	0								0	0	0	0.15486	1	36352	36352		8.5933	0.68312	1		+		28757	16434	20530	20696	28175	28175					-0.07523069558669704
LDEGYGISSV	10	Unmodified	_LDEGYGISSV_					0	0	0		nc|ENSG00000110768|P32780-2|GTF2H1;ENST00000418116.6_1_11:18344284-18382305:+|nuORF;ENSG00000110768|ENST00000265963|GTF2H1;ENST00000585803.1_1_18:57863810-57864818:+|nuORF	nc|ENSG00000110768|P32780-2|GTF2H1	nc|ENSG00000110768|P32780-2|GTF2H1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.9856567382812	2	520.250754	1038.48696	-0.49258	-0.00025626	-0.27237	-0.0001417	-0.76495	-0.00039796	520.2505616371367	86.189	0.66333	86.922	86.592	87.255	0.733					20	12	2	0	0	0	0.61429	1	32840	32840		37.974	8.8924	1	3584900			28758	2947	20531	20697	28176	28176					-0.03074850272855656
LDEHHISY	8	Unmodified	_LDEHHISY_					0	0	0		SPECC1L-MED15|5|fusion;SPECC1L-MED15|1|fusion;SPECC1L-MED15|6|fusion;SPECC1L-MED15|2|fusion;nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L	SPECC1L-MED15|5|fusion	SPECC1L-MED15|5|fusion	MULTI-SECPEP	A375_MHC_IP_R1	1	507.98028564453125	2	507.237981	1012.46141	-0.31107	-0.00015778	0.6458	0.00032757	0.33473	0.00016979	507.2378046640993	40.705	0.25351	40.705	40.559	40.813	0					6	4	2	0	0	0	0.86263	1	13984	13984		34.102	20.196	1	567280			28759	29231	20532	20698	28177	28177					-0.044322800046188604
LDEHYLQLF	9	Unmodified	_LDEHYLQLF_					0	0	0			REV__ENSG00000178685|ENST00000313028|PARP10	REV__ENSG00000178685|ENST00000313028|PARP10	MULTI-MSMS	A375_MHC_IP_R1	1	393.6010437011719	3	393.201118	1176.58152	0.14021	5.5133E-05	-0.027128	-1.0667E-05	0.11309	4.4466E-05	393.20111315860777	83.015	0.55495	83.015	82.722	83.277	0					16	10	2	0	0	0	0.65721	1	30398	30398		10.8	1.2555	1	1214200	+		28760	21513	20533	20699	28178	28178					0.00029708269130424014
LDEIEEKGLNY	11	Unmodified	_LDEIEEKGLNY_					0	0	0			REV__nc|ENSG00000144445|A0AUZ9-2|KANSL1L	REV__nc|ENSG00000144445|A0AUZ9-2|KANSL1L	MULTI-SECPEP	A375_MHC_IP_R1	1	442.1377258300781	3	441.553997	1321.64016	-0.0074998	-3.3116E-06	0.85687	0.00037835	0.84937	0.00037504	441.55433471278076	55.966	0.86336	55.966	55.584	56.447	0					27	16	2	0	0	0	0.99411	1	20159	20159		6.6235	0	1	4192800	+		28761	19423	20534	20700	28179	28179					-0.007792799470280443
LDEIEIAYNY	10	Unmodified	_LDEIEIAYNY_					0	0	0		tr|U7T1R0|U7T1R0_FUSNUUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murDPE=3SV=1	tr|U7T1R0|U7T1R0_FUSNUUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murDPE=3SV=1	tr|U7T1R0|U7T1R0_FUSNUUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murDPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	621.7128295898438	2	621.798069	1241.58158	-0.57737	-0.00035901	-0.52434	-0.00032603	-1.1017	-0.00068504	621.7985542056225	85.428	0.45859	86.164	85.831	86.29	0.73601					9	8	2	0	0	0	0.74754	1	32381	32381		12.241	4.6317	1	729000			28762	29911	20535	20701	28180	28180					-0.029543365214976802
LDEIEKRVE	9	Unmodified	_LDEIEKRVE_					0	0	0			REV__ENSG00000147231|ENST00000372548|RADX	REV__ENSG00000147231|ENST00000372548|RADX	MULTI-SECPEP	A375_MHC_IP_R1	1	378.2684020996094	3	377.539911	1129.5979	0.49652	0.00018746	-0.24362	-9.1976E-05	0.2529	9.5481E-05	377.5397235986933	35.881	0.30581	35.881	35.676	35.982	0					11	5	3	0	0	0	0.48845	1	12001	12001		37.075	7.2341	1	2284700	+		28763	19579	20536	20702	28181	28181					0.038287894352379226
LDEIEKRVE	9	Unmodified	_LDEIEKRVE_					0	0	0			REV__ENSG00000147231|ENST00000372548|RADX	REV__ENSG00000147231|ENST00000372548|RADX	MULTI-SECPEP	A375_MHC_IP_R2	2	378.26837158203125	3	377.539911	1129.5979	-0.05171	-1.9522E-05	0.19052	7.1927E-05	0.13881	5.2405E-05	377.5399416975294	35.153	0.45491	35.916	35.677	36.132	0.76338					13	8	2	0	0	0	0.48845	1	12729	12729		37.075	7.2341	1	3375100	+		28764	19579	20536	20702	28182	28182					0.038287894352379226
LDEIHRELRPQ	11	Unmodified	_LDEIHRELRPQ_					0	0	0		ENSG00000142684|ENST00000374266|ZNF593	ENSG00000142684|ENST00000374266|ZNF593	ENSG00000142684|ENST00000374266|ZNF593	MSMS	A375_MHC_IP_R2	2	703.5213012695312	2	703.380957	1404.74736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.97	1	117.63	117.13	118.13	0.65962								0	0	0	0.16249	1	44237	44237		5.7319	0	1				28765	5328	20537	20703	28183	28183					0.061177347778539115
LDEINYQSY	9	Unmodified	_LDEINYQSY_					0	0	0		ENSG00000164742|ENST00000297323|ADCY1	ENSG00000164742|ENST00000297323|ADCY1	ENSG00000164742|ENST00000297323|ADCY1	MULTI-MSMS	A375_MHC_IP_R2	2	572.7275390625	2	572.761486	1143.50842	-0.46228	-0.00026478	0.15074	8.634E-05	-0.31154	-0.00017844	573.2638100483636	34.475	0.35606	35.227	35.108	35.464	0.75225					10	6	2	0	0	0	0.64808	1	12521	12521		11.64	0	1	2589000			28766	6873	20538	20704	28184	28184					-0.05759465244113926
LDEKLMKKL	9	Unmodified	_LDEKLMKKL_					0	0	0			REV__tr|U7SF08|U7SF08_FUSNUCRISPRtypeIII-a/mtube-associatedproteincsm6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02349PE=4SV=1	REV__tr|U7SF08|U7SF08_FUSNUCRISPRtypeIII-a/mtube-associatedproteincsm6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02349PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	373.629150390625	3	373.226499	1116.65767	0.11368	4.2429E-05	0.19329	7.2142E-05	0.30698	0.00011457	373.2265753318977	25.841	1.0156	25.841	25.408	26.423	0					48	19	4	0	0	0	0.64136	1	7534	7534		8.4443	3.0416	1	123070000	+		28767	28164	20539	20705	28185	28185					0.10400388844914232
LDEKLQNKM	9	Unmodified	_LDEKLQNKM_					0	0	0			REV__tr|U7ST87|U7ST87_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01262PE=4SV=1	REV__tr|U7ST87|U7ST87_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01262PE=4SV=1	MSMS	A375_MHC_IP_R1	1	559.73583984375	2	559.797349	1117.58014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.849	1	25.849	25.349	26.349	0								0	0	0	0.15306	1	7614	7614		22.736	0.98964	1		+		28768	28463	20540	20706	28186	28186					0.026057509087195285
LDEKSLEKW	9	Unmodified	_LDEKSLEKW_					0	0	0			REV__ENSG00000175354|ENST00000309660|PTPN2	REV__ENSG00000175354|ENST00000309660|PTPN2	MULTI-SECPEP	A375_MHC_IP_R2	2	383.9189453125	3	383.20464	1146.59209	-0.21268	-8.1499E-05	-0.3486	-0.00013358	-0.56127	-0.00021508	383.2046464668835	39.329	0.45743	40.104	39.812	40.269	0.77451					21	8	3	0	0	0	0.73363	1	14499	14499		7.1017	5.5094	1	2972600	+		28769	21340	20541	20707	28187	28187					0.024656909235773128
LDEKVIFRT	9	Unmodified	_LDEKVIFRT_					0	0	0			REV__ENST00000556980.5_1_14:104177886-104180585:-|nuORF	REV__ENST00000556980.5_1_14:104177886-104180585:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	374.2729797363281	3	374.21688	1119.62881	0.14735	5.5143E-05	0.82328	0.00030808	0.97063	0.00036323	374.2170090585646	52.971	0.55625	52.971	52.694	53.25	0					19	10	3	0	0	0	0.79713	1	18941	18941		3.8763	0	1	2373800	+		28770	26116	20542	20708	28188	28188					0.07377987540144204
LDEKYEVTKKW	11	Unmodified	_LDEKYEVTKKW_					0	0	0		ENSG00000250821|ENST00000636125|EXOC1L	ENSG00000250821|ENST00000636125|EXOC1L	ENSG00000250821|ENST00000636125|EXOC1L	MULTI-SECPEP	A375_MHC_IP_R1	1	720.2813110351562	2	719.882467	1437.75038	-0.69157	-0.00049785	-0.45134	-0.00032491	-1.1429	-0.00082276	719.8821683747987	95.17	0.30481	95.17	94.956	95.261	0					7	5	2	0	0	0	0.99331	1	35010	35010		5.2969	0	1	2118400			28771	9852	20543	20709	28189	28189					0.049015651119589165
LDEKYEVTKKW	11	Unmodified	_LDEKYEVTKKW_					0	0	0		ENSG00000250821|ENST00000636125|EXOC1L	ENSG00000250821|ENST00000636125|EXOC1L	ENSG00000250821|ENST00000636125|EXOC1L	MULTI-SECPEP	A375_MHC_IP_R2	2	720.2821044921875	2	719.882467	1437.75038	-0.54178	-0.00039002	0.41303	0.00029733	-0.12875	-9.2687E-05	719.882639991148	94.554	0.3549	95.299	95.071	95.426	0.74474					11	6	2	0	0	0	0.99676	1	35957	35957		5.7319	2.1354	1	1974100			28772	9852	20543	20709	28190	28190					0.049015651119589165
LDELEIAQIKN	11	Unmodified	_LDELEIAQIKN_					0	0	0			REV__ENSG00000182492|ENST00000331595|BGN	REV__ENSG00000182492|ENST00000331595|BGN	MSMS	A375_MHC_IP_R1	1	643.173095703125	2	643.353542	1284.69253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.79	1	107.79	107.29	108.29	0								0	0	0	0.16191	1	39549	39549		8.7454	2.0222	1		+		28773	21696	20544	20710	28191	28191					0.06157303186569152
LDELLTVV	8	Unmodified	_LDELLTVV_					0	0	0			REV__ENSG00000232040|ENST00000452236|SCAND3	REV__ENSG00000232040|ENST00000452236|SCAND3	MULTI-SECPEP	A375_MHC_IP_R2	2	901.8533325195312	1	901.524076	900.516799	-0.28122	-0.00025352	0.76528	0.00068991	0.48406	0.00043639	901.522567705312	117.05	0.3058	117.71	117.63	117.94	0.65962					8	5	2	0	0	0	0.96266	1	44328	44328		16.942	0	1	4238900	+		28774	22744	20545	20711	28192	28192					0.06256133463148217
LDELREPL	8	Unmodified	_LDELREPL_					0	0	0			REV__nc|ENSG00000173898|O15020-2|SPTBN2	REV__nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-SECPEP	A375_MHC_IP_R1	1	492.477294921875	2	492.771657	983.528761	-0.46166	-0.00022749	-0.80349	-0.00039594	-1.2652	-0.00062343	492.77135840849525	36.279	0.35581	36.279	36.133	36.489	0					11	6	2	0	0	0	0.972	1	12172	12172		4.3292	0	1	1435700	+		28775	21253	20546	20712	28193	28193					0.036337502063247484
LDELRQFHH	9	Unmodified	_LDELRQFHH_					0	0	0		ENSG00000189079|ENST00000334344|ARID2;ARID2|p.G1450Dfs*3|1|0.36|ENSG00000189079|chr12:45852471-45852471|G/-|frameshift_variant;ARID2|p.T1506Qfs*10|1|0.88|ENSG00000189079|chr12:45852638-45852638|T/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ARID2|p.T1216Sfs*27|1|0.32|ENSG00000189079|chr12:45851770-45851770|C/-|frameshift_variant;ARID2|p.V1265Efs*22|1|0.07|ENSG00000189079|chr12:45851916-45851940|GTCATGGAGAACCCGTCCTGCCGAC/-|frameshift_variant;ARID2|p.M452Cfs*6|1|0.1|ENSG00000189079|chr12:45839348-45839382|TTCTATGGATATTCAGATGTTTGGCCCTGATGCAC/-|frameshift_variant;ENST00000426776.5_1_12:46123676-46169876:+|nuORF;ENST00000427628.5_1_12:46123676-46149750:+|nuORF;ARID2|p.P118Lfs*92|1|0.41|ENSG00000189079|chr12:45811484-45811499|TCCAAAGCCACAGCTT/-|frameshift_variant	ENSG00000189079|ENST00000334344|ARID2	ENSG00000189079|ENST00000334344|ARID2	MULTI-SECPEP	A375_MHC_IP_R1	1	398.60296630859375	3	398.871995	1193.59415	-0.31194	-0.00012442	-0.58399	-0.00023294	-0.89593	-0.00035736	398.8720964110461	28.889	0.50619	28.889	28.592	29.098	0					12	9	2	0	0	0	0.7911	1	8911	8911		4.5289	2.2461	1	1673400			28776	8957	20547	20713	28194	28194					0.005101644520209447
LDELVHQRF	9	Unmodified	_LDELVHQRF_					0	0	0			REV__PKHD1L1|p.G1030E|1|0.11|ENSG00000205038|chr8:109429428-109429428|G/A|missense_variant	REV__PKHD1L1|p.G1030E|1|0.11|ENSG00000205038|chr8:109429428-109429428|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	386.6022033691406	3	386.208495	1155.60366	0.30827	0.00011906	0.63846	0.00024658	0.94673	0.00036563	386.20850231332986	31.685	0.45662	31.685	31.465	31.921	0					19	8	3	0	0	0	0.41879	1	10257	10257		23.79	4.4278	1	6541100	+		28777	27789	20548	20714	28195	28195					0.03207932737564079
LDEPKYYRQTY	11	Unmodified	_LDEPKYYRQTY_					0	0	0			REV__nc|ENSG00000144048|O75319-2|DUSP11	REV__nc|ENSG00000144048|O75319-2|DUSP11	MSMS	A375_MHC_IP_R1	1	492.4777526855469	3	492.577025	1474.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.933	1	36.933	36.433	37.433	0								0	0	0	0.16258	1	12410	12410		2.4348	1.1051	1		+		28778	19409	20549	20715	28196	28196					-0.009121959274807523
LDEPKYYRQTY	11	Unmodified	_LDEPKYYRQTY_					0	0	0			REV__nc|ENSG00000144048|O75319-2|DUSP11	REV__nc|ENSG00000144048|O75319-2|DUSP11	MSMS	A375_MHC_IP_R2	2	492.4772644042969	3	492.577025	1474.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.772	1	37.543	37.043	38.043	0.7709								0	0	0	0.16302	1	13424	13424		1.2148	0	1		+		28779	19409	20549	20715	28197	28197					-0.009121959274807523
LDEPKYYRQTY	11	Unmodified	_LDEPKYYRQTY_					0	0	0			REV__nc|ENSG00000144048|O75319-2|DUSP11	REV__nc|ENSG00000144048|O75319-2|DUSP11	MSMS	A375_MHC_IP_R2	2	492.4776306152344	3	492.577025	1474.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.451	1	41.226	40.726	41.726	0.77451								0	0	0	0.16191	1	14979	14979		4.4062	0	1		+		28780	19409	20549	20715	28198	28198					-0.009121959274807523
LDEPKYYRQTY	11	Unmodified	_LDEPKYYRQTY_					0	0	0			REV__nc|ENSG00000144048|O75319-2|DUSP11	REV__nc|ENSG00000144048|O75319-2|DUSP11	MSMS	A375_MHC_IP_R2	2	492.4775695800781	3	492.577025	1474.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.404	1	44.177	43.677	44.677	0.7724								0	0	0	0.16307	1	16170	16170		1.1098	0	1		+		28781	19409	20549	20715	28199	28199					-0.009121959274807523
LDEPLEQIW	9	Unmodified	_LDEPLEQIW_					0	0	0			REV__ENSG00000116903|ENST00000366645|EXOC8	REV__ENSG00000116903|ENST00000366645|EXOC8	MULTI-SECPEP	A375_MHC_IP_R1	1	381.6133117675781	3	381.529123	1141.56554	0.21319	8.1337E-05	-0.08109	-3.0938E-05	0.1321	5.0398E-05	381.5290630699171	46.689	0.70972	46.689	46.345	47.055	0					23	13	2	0	0	0	0.74412	1	16363	16363		10.151	3.1135	1	1777100	+		28782	17980	20550	20716	28200	28200					0.0004200203222808341
LDEPLEQIW	9	Unmodified	_LDEPLEQIW_					0	0	0			REV__ENSG00000116903|ENST00000366645|EXOC8	REV__ENSG00000116903|ENST00000366645|EXOC8	MULTI-SECPEP	A375_MHC_IP_R2	2	381.6131286621094	3	381.529123	1141.56554	-0.029412	-1.1221E-05	0.15381	5.8682E-05	0.1244	4.746E-05	381.52917147205414	45.863	0.85785	46.629	46.15	47.008	0.76519					26	16	3	0	0	0	0.74412	1	17109	17109		10.151	0.38632	1	1810100	+		28783	17980	20550	20716	28201	28201					0.0004200203222808341
LDEPTTEMDP	10	Unmodified	_LDEPTTEMDP_					0	0	0		ABCA4|p.G2100E|1|0.11|ENSG00000198691|chr1:94001089-94001089|C/T|missense_variant	ABCA4|p.G2100E|1|0.11|ENSG00000198691|chr1:94001089-94001089|C/T|missense_variant	ABCA4|p.G2100E|1|0.11|ENSG00000198691|chr1:94001089-94001089|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	574.0804443359375	2	574.244812	1146.47507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.758	1	63.501	63.001	64.001	0.74263								0	0	0	0.15332	1	23791	23791		10.074	2.1638	1				28784	5	20551	20717	28202	28202					-0.09230835078369637
LDEPWRLY	8	Unmodified	_LDEPWRLY_					0	0	0			REV__ENSG00000187554|ENST00000642603|TLR5	REV__ENSG00000187554|ENST00000642603|TLR5	MULTI-SECPEP	A375_MHC_IP_R2	2	546.527587890625	2	546.279649	1090.54475	-0.75586	-0.00041291	-0.82067	-0.00044831	-1.5765	-0.00086122	546.2787185965075	83.406	0.76549	84.146	83.898	84.663	0.73962					20	14	2	0	0	0	0.81376	1	31798	31798		25.399	6.1423	1	2565500	+		28785	22028	20552	20718	28203	28203					0.003094564432331026
LDEQAGTPPCS	11	Unmodified	_LDEQAGTPPCS_					0	0	0		nc|ENSG00000102001|O60840-7|CACNA1F;nc|ENSG00000102001|O60840-4|CACNA1F;ENSG00000102001|ENST00000323022|CACNA1F;nc|ENSG00000102001|O60840|CACNA1F	nc|ENSG00000102001|O60840-7|CACNA1F	nc|ENSG00000102001|O60840-7|CACNA1F	MSMS	A375_MHC_IP_R1	1	559.1875	2	559.245146	1116.47574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.443	1	46.443	45.943	46.943	0								0	0	0	0.15971	1	16296	16296		14.405	1.8738	1				28786	2346	20553	20719	28204	28204					-0.07783995638624219
LDEQAQWKHYL	11	Unmodified	_LDEQAQWKHYL_					0	0	0		ENST00000580011.1_1_17:62082347-62097946:-|nuORF;ENST00000584403.5_1_17:62081411-62097970:-|nuORF;ENSG00000108622|ENST00000579788|ICAM2	ENST00000580011.1_1_17:62082347-62097946:-|nuORF	ENST00000580011.1_1_17:62082347-62097946:-|nuORF	MSMS	A375_MHC_IP_R2	2	477.6305847167969	3	477.573614	1429.69901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.318	1	67.055	66.555	67.555	0.73631								0	0	0	0.16309	1	25131	25131		2.6312	0	1				28787	2823	20554	20720	28205	28205					0.0013524113796847814
LDEQHCAY	8	Unmodified	_LDEQHCAY_					0	0	0			REV__ENSG00000122126|ENST00000371113|OCRL	REV__ENSG00000122126|ENST00000371113|OCRL	MSMS	A375_MHC_IP_R1	1	489.5017395019531	2	489.702917	977.391281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.904	1	59.904	59.404	60.404	0								0	0	0	0.16876	1	21558	21558		13.508	0.97634	1		+		28788	18189	20555	20721	28206	28206					-0.09831901664745146
LDEQLYSF	8	Unmodified	_LDEQLYSF_					0	0	0		nc|ENSG00000261011|Q8TF27|AGAP11	nc|ENSG00000261011|Q8TF27|AGAP11	nc|ENSG00000261011|Q8TF27|AGAP11	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9800720214844	2	507.742565	1013.47058	-0.86614	-0.00043978	-4.1375	-0.0021008	-5.0036	-0.0025406	507.73949896007565	44.828	0.56174	45.597	45.239	45.8	0.76909					14	10	2	0	0	0	0.972	1	16730	16730		7.9102	0.62092	1	4270500			28789	14928	20556	20722	28207	28207					-0.03561931438935062
LDEQRIHYR	9	Unmodified	_LDEQRIHYR_					0	0	0			REV__POTED|p.R137Q|1|0.81|ENSG00000166351|chr21:13610638-13610638|G/A|missense_variant	REV__POTED|p.R137Q|1|0.81|ENSG00000166351|chr21:13610638-13610638|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	615.2677612304688	2	615.322911	1228.63127	-0.10678	-6.5706E-05	-3.5419	-0.0021794	-3.6487	-0.0022451	615.3221528783987	107.39	0.6143	107.39	106.98	107.6	0					12	11	2	0	0	0	0.63811	1	39277	39277		12.532	0.29089	1	718000	+		28790	27823	20557	20723	28208	28208					0.026098359978050212
LDERKFPV	8	Unmodified	_LDERKFPV_					0	0	0		CACNA2D3|p.S812F|1|0.38|ENSG00000157445|chr3:54899854-54899854|C/T|missense_variant	CACNA2D3|p.S812F|1|0.38|ENSG00000157445|chr3:54899854-54899854|C/T|missense_variant	CACNA2D3|p.S812F|1|0.38|ENSG00000157445|chr3:54899854-54899854|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	502.68182373046875	2	502.282192	1002.54983	-0.73305	-0.0003682	0.52247	0.00026243	-0.21058	-0.00010577	502.2824163634211	68.256	0.55978	68.256	67.955	68.514	0					23	10	3	0	0	0	0.50167	1	24707	24707		50.855	3.1063	1	7800400			28791	280	20558	20724	28209	28209					0.048657603058586574
LDERVIAKR	9	Unmodified	_LDERVIAKR_					0	0	0			REV__ENSG00000139218|ENST00000369367|SCAF11	REV__ENSG00000139218|ENST00000369367|SCAF11	MSMS	A375_MHC_IP_R1	1	550.4000244140625	2	550.332747	1098.65094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.16	1	141.16	140.66	141.66	0								0	0	0	0.15486	1	54192	54192		3.9444	0	1		+		28792	19143	20559	20725	28210	28210					0.10556212008555121
LDESKQLY	8	Unmodified	_LDESKQLY_					0	0	0		ENST00000477045.1_1_1:2518532-2519982:+|nuORF;nc|ENSG00000157870|Q8TBF2-4|PRXL2B;ENST00000484099.5_1_1:2518532-2520863:+|nuORF;nc|ENSG00000157870|Q8TBF2-2|PRXL2B;nc|ENSG00000157870|Q8TBF2-6|PRXL2B;ENSG00000157870|ENST00000419916|PRXL2B;nc|ENSG00000157870|Q8TBF2-7|PRXL2B;ENST00000493183.5_1_1:2517940-2520863:+|nuORF;ENST00000481683.5_1_1:2518487-2520915:+|nuORF;nc|ENSG00000157870|Q8TBF2-3|PRXL2B	ENST00000477045.1_1_1:2518532-2519982:+|nuORF	ENST00000477045.1_1_1:2518532-2519982:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	498.6551513671875	2	498.25584	994.497126	-0.54747	-0.00027278	-0.36797	-0.00018334	-0.91544	-0.00045612	498.255568869221	74.391	0.35709	75.128	74.907	75.264	0.73751					10	6	2	0	0	0	0.8824	1	28276	28276		23.148	0	1	1123800			28793	6274	20560	20726	28211	28211					-0.0003424254762194323
LDESNTYQL	9	Unmodified	_LDESNTYQL_					0	0	0		ENSG00000117148|ENST00000375406|ACTL8	ENSG00000117148|ENST00000375406|ACTL8	ENSG00000117148|ENST00000375406|ACTL8	MSMS	A375_MHC_IP_R1	1	541.7553100585938	2	541.753661	1081.49277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.24	1	112.24	111.74	112.74	0								0	0	0	0.1535	1	41139	41139		15.847	3.3156	1				28794	3460	20561	20727	28212	28212					-0.044717517611843505
LDETPATEPL	10	Unmodified	_LDETPATEPL_					0	0	0			REV__ENST00000366835.7_1_1:226066925-226067009:-|nuORF	REV__ENST00000366835.7_1_1:226066925-226067009:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	543.6710205078125	2	543.271687	1084.52882	-0.74873	-0.00040676	-0.30553	-0.00016598	-1.0543	-0.00057275	543.2713087382788	48.218	0.8049	48.975	48.578	49.383	0.75736					32	15	3	0	0	0	0.74754	1	18090	18090		22.736	4.5899	1	4804100	+		28795	23941	20562	20728	28213	28213					-0.010062945843401394
LDEVDFYYD	9	Unmodified	_LDEVDFYYD_					0	0	0		ENST00000473311.5_1_3:183906074-183911483:+|nuORF;nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000468892.5_1_3:183907488-183910505:+|nuORF;ABCF3|p.P503S|1|0.44|ENSG00000161204|chr3:184191193-184191193|C/T|missense_variant	ENST00000473311.5_1_3:183906074-183911483:+|nuORF	ENST00000473311.5_1_3:183906074-183911483:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	590.224365234375	2	589.748044	1177.48154	-0.56017	-0.00033036	0.71776	0.0004233	0.15759	9.294E-05	589.748120049566	98.364	0.25506	99.124	98.895	99.15	0.75977					7	4	2	0	0	0	0.69674	1	37252	37252		7.2892	0.18751	1	1042000			28796	6468	20563	20729	28214	28214					-0.1001057385533386
LDEVITSH	8	Unmodified	_LDEVITSH_					0	0	0		ENSG00000152465|ENST00000378165|NMT2	ENSG00000152465|ENST00000378165|NMT2	ENSG00000152465|ENST00000378165|NMT2	MSMS	A375_MHC_IP_R2	2	457.1785583496094	2	457.234907	912.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.96	1	141	140.5	141.5	0.04216								0	0	0	0.16876	1	55156	55156		2.5775	0	1				28797	5967	20564	20730	28215	28215					-0.004467982361461509
LDEWMPTK	8	Unmodified	_LDEWMPTK_					0	0	0		ENSG00000154719|ENST00000352957|MRPL39;nc|ENSG00000154719|Q9NYK5-2|MRPL39	ENSG00000154719|ENST00000352957|MRPL39	ENSG00000154719|ENST00000352957|MRPL39	MSMS	A375_MHC_IP_R1	1	510.12847900390625	2	510.24696	1018.47937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.94	1	114.94	114.44	115.44	0								0	0	0	0.16876	1	42151	42151		12.532	0.89125	1				28798	6101	20565	20731	28216	28216					-0.029132810741202775
LDEYRLRLY	9	Unmodified	_LDEYRLRLY_					0	0	0			REV__ENSG00000147119|ENST00000276055|CHST7	REV__ENSG00000147119|ENST00000276055|CHST7	MULTI-SECPEP	A375_MHC_IP_R2	2	621.2371215820312	2	620.837862	1239.66117	-0.89465	-0.00055543	0.4626	0.0002872	-0.43205	-0.00026823	620.8381955760701	65.63	0.50783	66.368	66.172	66.68	0.73811					14	9	2	0	0	0	0.78348	1	24948	24948		7.9102	3.9658	1	1560100	+		28799	19569	20566	20732	28217	28217					0.050927749431366465
LDEYYYYDYLE	11	Unmodified	_LDEYYYYDYLE_					0	0	0			REV__nc|ENSG00000171502|Q17RW2-2|COL24A1	REV__nc|ENSG00000171502|Q17RW2-2|COL24A1	MSMS	A375_MHC_IP_R2	2	774.8240356445312	2	774.82448	1547.63441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.258	1	89.99	89.49	90.49	0.7318								0	0	0	0.16353	1	33969	33969		0.35063	0	1		+		28800	21072	20567	20733	28218	28218					-0.11750423249350206
LDFDPLLSPA	10	Unmodified	_LDFDPLLSPA_					0	0	0		ENSG00000135334|ENST00000257787|AKIRIN2	ENSG00000135334|ENST00000257787|AKIRIN2	ENSG00000135334|ENST00000257787|AKIRIN2	MULTI-SECPEP	A375_MHC_IP_R2	2	544.6341552734375	2	544.28714	1086.55973	-1.0481	-0.00057045	0.79647	0.00043351	-0.2516	-0.00013694	544.2875505005172	71.993	1.1643	72.727	72.213	73.377	0.73421					41	22	3	0	0	0	0.87163	1	27359	27359		9.3831	5.7866	1	3325000			28801	4670	20568	20734	28219	28219					0.01990903520595566
LDFETEHKL	9	Unmodified	_LDFETEHKL_					0	0	0		ENST00000483996.1_1_7:872152-878624:+|nuORF;nc|ENSG00000164828|O94901-4|SUN1;ENST00000427969.5_1_7:878456-882177:+|nuORF;nc|ENSG00000164828|O94901-2|SUN1;nc|ENSG00000164828|O94901-7|SUN1;nc|ENSG00000164828|O94901-3|SUN1;ENST00000340926.7_1_7:872152-889323:+|nuORF;ENST00000413171.6_1_7:872152-892516:+|nuORF;nc|ENSG00000164828|O94901-6|SUN1;ENSG00000164828|ENST00000401592|SUN1;nc|ENSG00000164828|O94901-9|SUN1	ENST00000483996.1_1_7:872152-878624:+|nuORF	ENST00000483996.1_1_7:872152-878624:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	378.280517578125	3	377.860873	1130.56079	-0.091205	-3.4463E-05	1.8653	0.00070482	1.7741	0.00067036	377.86139406186834	23.881	0.25647	24.511	24.435	24.691	0.63014					5	4	2	0	0	0	0.60101	1	7720	7720		10.151	0	1	1981300			28802	6885	20569	20735	28220	28220					0.0007311788949664333
LDFFEKFYKQY	11	Unmodified	_LDFFEKFYKQY_					0	0	0		tr|U7SF08|U7SF08_FUSNUCRISPRtypeIII-a/mtube-associatedproteincsm6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02349PE=4SV=1	tr|U7SF08|U7SF08_FUSNUCRISPRtypeIII-a/mtube-associatedproteincsm6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02349PE=4SV=1	tr|U7SF08|U7SF08_FUSNUCRISPRtypeIII-a/mtube-associatedproteincsm6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02349PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	510.6703186035156	3	509.922132	1526.74457	-0.82643	-0.00042142	-0.91352	-0.00046582	-1.74	-0.00088724	509.9216849431068	66.862	0.40839	67.598	67.342	67.75	0.73631					13	7	2	0	0	0	1.0002	1	25257	25257		1.3296	1.3296	1	1092000			28803	29389	20570	20736	28221	28221					0.0022646660033842636
LDFFEKFYKQY	11	Unmodified	_LDFFEKFYKQY_					0	0	0		tr|U7SF08|U7SF08_FUSNUCRISPRtypeIII-a/mtube-associatedproteincsm6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02349PE=4SV=1	tr|U7SF08|U7SF08_FUSNUCRISPRtypeIII-a/mtube-associatedproteincsm6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02349PE=4SV=1	tr|U7SF08|U7SF08_FUSNUCRISPRtypeIII-a/mtube-associatedproteincsm6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02349PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		3	509.922132	1526.74457	-0.79025	-0.00040297	-1.0336	-0.00052707	-1.8239	-0.00093003	509.9215841276545	67.652	0.40568	67.652	67.399	67.804	0	0.02696	-7.9983E-05	NaN	1.3296	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1042200			28804	29389	20570	20736							0.0022646660033842636
LDFKVIQSY	9	Unmodified	_LDFKVIQSY_					0	0	0		PCDHB14|p.E310K|1|0.15|ENSG00000120327|chr5:141224433-141224433|G/A|missense_variant	PCDHB14|p.E310K|1|0.15|ENSG00000120327|chr5:141224433-141224433|G/A|missense_variant	PCDHB14|p.E310K|1|0.15|ENSG00000120327|chr5:141224433-141224433|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	371.200927734375	3	371.53773	1111.59136	-0.09574	-3.5571E-05	0.26678	9.9119E-05	0.17104	6.3548E-05	371.537716622788	52.876	0.60887	53.627	53.335	53.944	0.75105					17	11	2	0	0	0	0.81166	1	19906	19906		1.0715	0	1	1324800			28805	15132	20571	20737	28222	28222					0.04002896274550949
LDFLNSKKL	9	Unmodified	_LDFLNSKKL_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MULTI-SECPEP	A375_MHC_IP_R1	1	539.1718139648438	2	539.318774	1076.623	-0.53217	-0.00028701	1.2977	0.00069988	0.76555	0.00041288	539.3197535622462	56.33	0.4565	56.33	56.041	56.498	0					7	5	2	0	0	0	0.5212	1	20158	20158		15.248	0	1	1530800			28806	1812	20572	20738	28223	28223					0.08774889028472899
LDFNERNFRRN	11	Unmodified	_LDFNERNFRRN_					0	0	0			REV__tr|U7SED7|U7SED7_FUSNUCoproporphyrinogendehydrogenaseHemZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02333PE=4SV=1	REV__tr|U7SED7|U7SED7_FUSNUCoproporphyrinogendehydrogenaseHemZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02333PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	494.6514892578125	3	494.251646	1479.73311	-0.35945	-0.00017766	0.18175	8.9828E-05	-0.17771	-8.7833E-05	494.25176981125793	24.977	0.35396	24.977	24.801	25.154	0					9	6	2	0	0	0	0.72964	1	7270	7270		9.2438	4.8376	1	6581400	+		28807	28160	20573	20739	28224	28224					0.012430823495378718
LDFPPISAFP	10	Unmodified	_LDFPPISAFP_					0	0	0		ENSG00000270885|ENST00000603017|RASL10B	ENSG00000270885|ENST00000603017|RASL10B	ENSG00000270885|ENST00000603017|RASL10B	MULTI-MSMS	A375_MHC_IP_R2	2	1105.0235595703125	1	1103.57717	1102.5699	0.29344	0.00032384	1.1206	0.0012366	1.414	0.0015605	1103.5786089482951	137.53	0.96902	137.62	137.15	138.11	0.083969					26	18	2	0	0	0	0.71245	1	53978	53978		6.7232	0.96273	1	3618500			28808	9983	20574	20740	28225	28225					0.02271511245817237
LDFPPISAFP	10	Unmodified	_LDFPPISAFP_					0	0	0		ENSG00000270885|ENST00000603017|RASL10B	ENSG00000270885|ENST00000603017|RASL10B	ENSG00000270885|ENST00000603017|RASL10B	MULTI-MATCH	A375_MHC_IP_R1	1		1	1103.57717	1102.5699	-0.22959	-0.00025337	2.0097	0.0022178	1.7801	0.0019645	1103.5791656595961	137.46	1.0272	137.46	137.13	138.15	0	-0.079653	0.00027262	NaN	6.7232	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4000300			28809	9983	20574	20740							0.02271511245817237
LDFWCNICG	9	Unmodified	_LDFWCNICG_					0	0	0		ENSG00000011258|ENST00000586178|MBTD1;nc|ENSG00000011258|Q05BQ5-3|MBTD1;ENST00000591270.1_1_17:49270805-49337516:-|nuORF	ENSG00000011258|ENST00000586178|MBTD1	ENSG00000011258|ENST00000586178|MBTD1	MSMS	A375_MHC_IP_R1	1	357.448974609375	3	357.485984	1069.43612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.62	1	74.62	74.12	75.12	0								0	0	0	0.15486	1	27181	27181		1.0715	0	1				28810	995	20575	20741	28226	28226					-0.09581794123050713
LDFWLKEY	8	Unmodified	_LDFWLKEY_					0	0	0		nc|ENSG00000163071|Q8TC71-2|SPATA18;ENSG00000163071|ENST00000295213|SPATA18	nc|ENSG00000163071|Q8TC71-2|SPATA18	nc|ENSG00000163071|Q8TC71-2|SPATA18	MSMS	A375_MHC_IP_R2	2	557.4097900390625	2	557.2844	1112.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.13	1	103.9	103.4	104.4	0.76428								0	0	0	0.16876	1	39062	39062		9.3474	0	1				28811	6630	20576	20742	28227	28227					0.002472247287641949
LDFWPQLITLM	11	Unmodified	_LDFWPQLITLM_					0	0	0		ENSG00000137766|ENST00000260323|UNC13C;ENST00000561210.1_1_15:54556427-54709226:+|nuORF	ENSG00000137766|ENST00000260323|UNC13C;ENST00000561210.1_1_15:54556427-54709226:+|nuORF	ENSG00000137766|ENST00000260323|UNC13C	MULTI-SECPEP	A375_MHC_IP_R1	1	460.1191101074219	3	459.580941	1375.72099	-0.21932	-0.00010079	-0.47067	-0.00021631	-0.68998	-0.0003171	459.5806760150097	25.229	0.5601	25.229	25.053	25.613	0					25	10	3	0	0	0	0.99681	1	7385	7385		2.4348	2.4348	1	17070000			28812	4911;13506	20577	20743	28228	28228					0.04816329562163446
LDFWPQLITLM	11	Unmodified	_LDFWPQLITLM_					0	0	0		ENSG00000137766|ENST00000260323|UNC13C;ENST00000561210.1_1_15:54556427-54709226:+|nuORF	ENSG00000137766|ENST00000260323|UNC13C;ENST00000561210.1_1_15:54556427-54709226:+|nuORF	ENSG00000137766|ENST00000260323|UNC13C	MULTI-SECPEP	A375_MHC_IP_R2	2	460.1192626953125	3	459.580941	1375.72099	-0.76031	-0.00034942	-0.27583	-0.00012677	-1.0361	-0.00047619	459.58084839891393	24.618	0.60873	25.261	25.11	25.719	0.64368					24	11	3	0	0	0	0.99916	1	8191	8191		1.1098	1.1098	1	10841000			28813	4911;13506	20577	20743	28229	28229					0.04816329562163446
LDGADRHDLP	10	Unmodified	_LDGADRHDLP_					0	0	0			REV__nc|ENSG00000095970|Q9NZC2-2|TREM2	REV__nc|ENSG00000095970|Q9NZC2-2|TREM2	MULTI-SECPEP	A375_MHC_IP_R2	2	554.189453125	2	554.772719	1107.53089	-0.85212	-0.00047273	2.9786	0.0016524	2.1265	0.0011797	554.7741389975633	65.205	0.25225	65.943	65.766	66.018	0.73811					6	4	2	0	0	0	0.6774	1	24671	24671		34.402	9.0024	1	906230	+		28814	17003	20578	20744	28230	28230					-0.01857821055864406
LDGETLTESH	10	Unmodified	_LDGETLTESH_					0	0	0			REV__ENSG00000159231|ENST00000290354|CBR3	REV__ENSG00000159231|ENST00000290354|CBR3	MULTI-SECPEP	A375_MHC_IP_R2	2	552.0485229492188	2	551.256568	1100.49858	-0.77523	-0.00042735	1.9505	0.0010752	1.1753	0.00064789	551.2581780232557	102.8	1.0677	103.57	102.97	104.04	0.76428					41	20	3	0	0	0	0.91556	1	39021	39021		6.2058	0	1	997320	+		28815	20107	20579	20745	28231	28231					-0.04764653249526418
LDGGHEDAPF	10	Unmodified	_LDGGHEDAPF_					0	0	0		CUBN|p.L1692F|1|0.17|ENSG00000107611|chr10:16950007-16950007|G/A|missense_variant	CUBN|p.L1692F|1|0.17|ENSG00000107611|chr10:16950007-16950007|G/A|missense_variant	CUBN|p.L1692F|1|0.17|ENSG00000107611|chr10:16950007-16950007|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	529.6314086914062	2	529.232896	1056.45124	-0.69299	-0.00036675	-1.362	-0.00072083	-2.055	-0.0010876	529.2318572501723	44.791	0.71259	45.56	45.239	45.951	0.7691					28	13	3	0	0	0	0.72086	1	16712	16712		30.637	1.555	1	3757400			28816	683	20580	20746	28232	28232					-0.07472887729863942
LDGGNLEVI	9	Unmodified	_LDGGNLEVI_					0	0	0		ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.N3185Ifs*33|1|0.2|ENSG00000168702|chr2:140475211-140475211|A/-|frameshift_variant	ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	MULTI-SECPEP	A375_MHC_IP_R2	2	465.65032958984375	2	465.250557	928.486562	-0.94474	-0.00043954	-0.21556	-0.00010029	-1.1603	-0.00053983	465.2504981269991	26.678	0.76692	27.338	27.109	27.876	0.65992					32	14	3	0	0	0	0.16764	1	9034	9034		60.074	4.5712	1	9378800			28817	7335	20581	20747	28233	28233					0.01945774797957256
LDGHIKLTDFG	11	Unmodified	_LDGHIKLTDFG_					0	0	0		ENSG00000150457|ENST00000382592|LATS2	ENSG00000150457|ENST00000382592|LATS2	ENSG00000150457|ENST00000382592|LATS2	MULTI-SECPEP	A375_MHC_IP_R1	1	406.28338623046875	3	405.883789	1214.62954	-0.34361	-0.00013946	0.36057	0.00014635	0.01696	6.8838E-06	405.88395540367145	73.329	0.65873	73.329	73.082	73.74	0					22	12	3	0	0	0	0.9836	1	26681	26681		3.8459	0	1	5176000			28818	5844	20582	20748	28234	28234					0.030807821891585263
LDGLCPRRF	9	Unmodified	_LDGLCPRRF_					0	0	0		KCNV2|p.H446Tfs*8|1|0.33|ENSG00000168263|chr9:2719071-2719071|C/-|frameshift_variant;ENSG00000168263|ENST00000382082|KCNV2	KCNV2|p.H446Tfs*8|1|0.33|ENSG00000168263|chr9:2719071-2719071|C/-|frameshift_variant	KCNV2|p.H446Tfs*8|1|0.33|ENSG00000168263|chr9:2719071-2719071|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	538.1459350585938	2	538.787118	1075.55968	-0.69862	-0.00037641	3.2101	0.0017295	2.5114	0.0013531	538.7890609177967	46.405	0.452	46.405	46.144	46.596	0					13	8	2	0	0	0	0.73363	1	16340	16340		6.7232	0.51738	1	1923700			28819	7280	20583	20749	28235	28235					0.024926250395765237
LDGLFRRY	8	Unmodified	_LDGLFRRY_					0	0	0		ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D	ENSG00000116604|ENST00000348159|MEF2D	ENSG00000116604|ENST00000348159|MEF2D	MULTI-MSMS	A375_MHC_IP_R2	2	520.6875	2	520.287808	1038.56106	-0.66882	-0.00034798	-0.5994	-0.00031186	-1.2682	-0.00065984	520.2873671155171	70.693	0.40536	71.427	71.2	71.605	0.73421					18	7	3	0	0	0	0.69557	1	26824	26824		36.127	13.391	1	5838800			28820	3410	20584	20750	28236	28236					0.043325824000021385
LDGLKPPQ	8	Unmodified	_LDGLKPPQ_					0	0	0		ENSG00000143303|ENST00000368216|METTL25B;ENST00000484742.5_2_1:156701836-156702010:+|nuORF;nc|ENSG00000143303|Q96FB5-2|METTL25B	ENSG00000143303|ENST00000368216|METTL25B	ENSG00000143303|ENST00000368216|METTL25B	MULTI-SECPEP	A375_MHC_IP_R2	2	434.6504821777344	2	434.25036	866.486168	-0.37547	-0.00016305	-0.0076375	-3.3166E-06	-0.38311	-0.00016637	434.2502915641788	55.208	0.96601	55.959	55.523	56.489	0.75075					40	18	3	0	0	0	0.84748	1	20795	20795		28.487	0	1	8881300			28821	5366	20585	20751	28237	28237					0.04758399868762808
LDGLKRRVV	9	Unmodified	_LDGLKRRVV_					0	0	0			REV__nc|ENSG00000171045|Q96NA8-2|TSNARE1	REV__nc|ENSG00000171045|Q96NA8-2|TSNARE1	MULTI-MSMS	A375_MHC_IP_R1	1	528.73779296875	2	528.337833	1054.66111	-0.054561	-2.8827E-05	-0.50592	-0.0002673	-0.56048	-0.00029612	528.3375186696807	48.856	0.35455	48.856	48.679	49.033	0					10	6	2	0	0	0	0.60101	1	17272	17272		14.838	2.5976	1	2519000	+		28822	21038	20586	20752	28238	28238					0.13596819733811571
LDGLYRKIY	9	Unmodified	_LDGLYRKIY_					0	0	0			REV__ENSG00000129657|ENST00000436233|SEC14L1	REV__ENSG00000129657|ENST00000436233|SEC14L1	MSMS	A375_MHC_IP_R1	1	380.9400634765625	3	380.885241	1139.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.237	1	20.237	19.737	20.737	0								0	0	0	0.15331	1	5163	5163		16.149	6.0752	1		+		28823	18503	20587	20753	28239	28239					0.06966291402773095
LDGPQKKPEGP	11	Unmodified	_LDGPQKKPEGP_					0	0	0		ENSG00000116128|ENST00000234739|BCL9	ENSG00000116128|ENST00000234739|BCL9	ENSG00000116128|ENST00000234739|BCL9	MULTI-MSMS	A375_MHC_IP_R1	1	583.7140502929688	2	583.31422	1164.61389	-0.25056	-0.00014616	0.18932	0.00011043	-0.06124	-3.5722E-05	583.3143226085031	57.792	0.75971	57.792	57.518	58.278	0					43	14	4	0	0	0	0.26358	1	20710	20710		49.554	13.048	1	18538000			28824	3372	20588	20754	28240	28240					0.03816495672117526
LDGPQKKPEGP	11	Unmodified	_LDGPQKKPEGP_					0	0	0		ENSG00000116128|ENST00000234739|BCL9	ENSG00000116128|ENST00000234739|BCL9	ENSG00000116128|ENST00000234739|BCL9	MULTI-MSMS	A375_MHC_IP_R2	2	583.7138671875	2	583.31422	1164.61389	-0.79905	-0.0004661	0.17647	0.00010294	-0.62258	-0.00036316	583.3143047495475	57.193	0.86638	57.943	57.612	58.478	0.75015					43	16	4	0	0	0	0.36212	1	21587	21587		41.956	5.4494	1	26234000			28825	3372	20588	20754	28241	28241					0.03816495672117526
LDGPQKKPEGP	11	Unmodified	_LDGPQKKPEGP_					0	0	0		ENSG00000116128|ENST00000234739|BCL9	ENSG00000116128|ENST00000234739|BCL9	ENSG00000116128|ENST00000234739|BCL9	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	583.31422	1164.61389	-0.25056	-0.00014616	0.18932	0.00011043	-0.06124	-3.5722E-05	583.3143226085031	57.792	0.75971	57.792	57.518	58.278	0	-0.075875	7.5832E-06	NaN	49.554	43	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18538000			28826	3372	20588	20754							0.03816495672117526
LDGPQKKPEGP	11	Unmodified	_LDGPQKKPEGP_					0	0	0		ENSG00000116128|ENST00000234739|BCL9	ENSG00000116128|ENST00000234739|BCL9	ENSG00000116128|ENST00000234739|BCL9	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	583.31422	1164.61389	-0.79905	-0.0004661	0.17647	0.00010294	-0.62258	-0.00036316	583.3143047495475	57.193	0.86638	57.943	57.612	58.478	0.75015	0.075875	-7.4089E-06	NaN	49.554	43	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26234000			28827	3372	20588	20754							0.03816495672117526
LDGPWERIL	9	Unmodified	_LDGPWERIL_					0	0	0			REV__nc|ENSG00000006715|P49754-2|VPS41	REV__nc|ENSG00000006715|P49754-2|VPS41	MULTI-SECPEP	A375_MHC_IP_R1	1	550.2003173828125	2	549.800749	1097.58694	-0.69899	-0.0003843	0.30306	0.00016662	-0.39593	-0.00021768	549.8008095610232	80.718	0.91354	80.718	80.34	81.253	0					32	17	3	0	0	0	0.4261	1	29456	29456		30.637	0	1	7979100	+		28828	16142	20589	20755	28242	28242					0.042054318516193234
LDGQIHTPV	9	Unmodified	_LDGQIHTPV_					0	0	0		ENST00000506111.1_1_4:38775539-38775578:-|nuORF	ENST00000506111.1_1_4:38775539-38775578:-|nuORF	ENST00000506111.1_1_4:38775539-38775578:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	490.66400146484375	2	490.263999	978.513445	-0.17643	-8.6498E-05	-0.36381	-0.00017836	-0.54024	-0.00026486	490.26384963642545	47.693	0.65535	47.693	47.467	48.122	0					19	12	2	0	0	0	0.34746	1	16785	16785		38.176	0	1	4769800			28829	12851	20590	20756	28243	28243					0.023328834091216777
LDGQKVANL	9	Unmodified	_LDGQKVANL_					0	0	0			REV__ENSG00000136381|ENST00000258886|IREB2	REV__ENSG00000136381|ENST00000258886|IREB2	MULTI-MSMS	A375_MHC_IP_R2	2	479.67132568359375	2	479.271824	956.529095	-0.61563	-0.00029505	-0.19895	-9.5353E-05	-0.81458	-0.00039041	479.27174012089046	41.653	0.35799	42.427	42.249	42.607	0.77451					12	6	2	0	0	0	0.018261	1	15469	15469		85.642	3.7513	1	4788000	+		28830	18934	20591	20757	28244	28244					0.04909169926179402
LDGQKVANL	9	Unmodified	_LDGQKVANL_					0	0	0			REV__ENSG00000136381|ENST00000258886|IREB2	REV__ENSG00000136381|ENST00000258886|IREB2	MULTI-SECPEP	A375_MHC_IP_R2	2	478.6364440917969	2	479.271824	956.529095	-0.61563	-0.00029505	-0.19895	-9.5353E-05	-0.81458	-0.00039041	479.27174012089046	41.653	0.35799	42.427	42.249	42.607	0.77451					12	6	2	0	0	0	0.13064	1	15458	15458		56.177	0	1	4788000	+		28831	18934	20591	20757	28245	28245					0.04909169926179402
LDGSASSLGY	10	Unmodified	_LDGSASSLGY_					0	0	0			REV__ENST00000358932.8_1_14:20784504-20793722:-|nuORF	REV__ENST00000358932.8_1_14:20784504-20793722:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	485.6299743652344	2	485.229822	968.445091	-0.26891	-0.00013048	0.49441	0.0002399	0.2255	0.00010942	485.2300567160749	74.323	0.50706	74.323	73.995	74.502	0					16	9	2	0	0	0	0.51963	1	27080	27080		26.884	6.43	1	1596900	+		28832	23866	20592	20758	28246	28246					-0.04039405961373177
LDGSASSLGY	10	Unmodified	_LDGSASSLGY_					0	0	0			REV__ENST00000358932.8_1_14:20784504-20793722:-|nuORF	REV__ENST00000358932.8_1_14:20784504-20793722:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	485.6297302246094	2	485.229822	968.445091	-0.55556	-0.00026957	0.49409	0.00023975	-0.061466	-2.9825E-05	485.2300511724489	73.636	0.56116	74.371	74.041	74.602	0.73541					19	10	2	0	0	0	0.66712	1	27938	27938		15.847	1.0089	1	2180400	+		28833	23866	20592	20758	28247	28247					-0.04039405961373177
LDGSFKPERV	10	Unmodified	_LDGSFKPERV_					0	0	0		nc|ENSG00000020219|A6NM43|CCT8L1P;ENSG00000198445|ENST00000359963|CCT8L2	nc|ENSG00000020219|A6NM43|CCT8L1P	nc|ENSG00000020219|A6NM43|CCT8L1P	MULTI-SECPEP	A375_MHC_IP_R2	2	383.1185302734375	3	383.208384	1146.60332	-0.34681	-0.0001329	0.35239	0.00013504	0.0055774	2.1373E-06	383.54275390055295	35.326	0.3043	36.09	35.878	36.183	0.76338					7	5	2	0	0	0	0.86608	1	12734	12734		17.863	0	1	1419600			28834	9270	20593	20759	28248	28248					0.035885130176893654
LDGSKRAW	8	Unmodified	_LDGSKRAW_					0	0	0			REV__tr|U7T5R6|U7T5R6_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00147PE=3SV=1	REV__tr|U7T5R6|U7T5R6_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00147PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	467.1507568359375	2	466.751059	931.487565	-0.41889	-0.00019552	0.31332	0.00014624	-0.10558	-4.9278E-05	466.75105789716935	47.029	0.61555	47.029	46.647	47.263	0					18	11	2	0	0	0	0.91495	1	16495	16495		18.135	0	1	3446000	+		28835	28834	20594	20760	28249	28249					0.019080339575111793
LDGTLKSRK	9	Unmodified	_LDGTLKSRK_					0	0	0		ENSG00000009413|ENST00000368802|REV3L;nc|ENSG00000009413|O60673-2|REV3L	ENSG00000009413|ENST00000368802|REV3L	ENSG00000009413|ENST00000368802|REV3L	MULTI-MSMS	A375_MHC_IP_R1	1	509.706298828125	2	509.306198	1016.59784	-0.43375	-0.00022091	0.15364	7.8249E-05	-0.28011	-0.00014266	509.3061907236943	128.76	0.46057	128.76	128.63	129.09	0					13	8	2	0	0	0	0.58047	1	49515	49515		15.847	15.847	1	4535200			28836	968	20595	20761	28250	28250					0.09020834225907493
LDGTLKSRK	9	Unmodified	_LDGTLKSRK_					0	0	0		ENSG00000009413|ENST00000368802|REV3L;nc|ENSG00000009413|O60673-2|REV3L	ENSG00000009413|ENST00000368802|REV3L	ENSG00000009413|ENST00000368802|REV3L	MULTI-MSMS	A375_MHC_IP_R2	2	509.70489501953125	2	509.306198	1016.59784	-0.81008	-0.00041258	-0.88789	-0.00045221	-1.698	-0.00086479	509.30563355967723	128.54	0.35394	128.78	128.65	129.01	0.23946					11	6	2	0	0	0	0.58047	1	50516	50516		15.847	3.3156	1	6657800			28837	968	20595	20761	28251	28251					0.09020834225907493
LDGTLKSRK	9	Unmodified	_LDGTLKSRK_					0	0	0		ENSG00000009413|ENST00000368802|REV3L;nc|ENSG00000009413|O60673-2|REV3L	ENSG00000009413|ENST00000368802|REV3L	ENSG00000009413|ENST00000368802|REV3L	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	509.306198	1016.59784	-0.81008	-0.00041258	-0.88789	-0.00045221	-1.698	-0.00086479	509.30563355967723	128.54	0.35394	128.78	128.65	129.01	0.23946	0.011469	-0.00040517	NaN	15.847	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6657800			28838	968	20595	20761							0.09020834225907493
LDGVMMLEELQ	11	Unmodified	_LDGVMMLEELQ_					0	0	0			REV__nc|ENSG00000073614|P29375-2|KDM5A	REV__nc|ENSG00000073614|P29375-2|KDM5A	MULTI-MSMS	A375_MHC_IP_R1	1	639.7098388671875	2	639.309432	1276.60431	-0.64857	-0.00041464	1.3759	0.0008796	0.72728	0.00046496	639.3101824483913	50.362	0.8184	50.362	49.845	50.663	0					26	15	2	0	0	0	0.26358	1	17852	17852		49.554	5.5724	1	3452600	+		28839	16620	20596	20762	28252	28252					-0.022927767199007576
LDGVMMLEELQ	11	Unmodified	_LDGVMMLEELQ_					0	0	0			REV__nc|ENSG00000073614|P29375-2|KDM5A	REV__nc|ENSG00000073614|P29375-2|KDM5A	MULTI-MSMS	A375_MHC_IP_R2	2	639.7092895507812	2	639.309432	1276.60431	-1.0283	-0.00065739	0.76342	0.00048806	-0.26487	-0.00016933	639.3098553932238	49.754	0.61103	50.508	50.193	50.804	0.75406					21	11	3	0	0	0	0.26358	1	18713	18713		49.554	11.379	1	4019800	+		28840	16620	20596	20762	28253	28253					-0.022927767199007576
LDGVMMLEELQ	11	Unmodified	_LDGVMMLEELQ_					0	0	0			REV__nc|ENSG00000073614|P29375-2|KDM5A	REV__nc|ENSG00000073614|P29375-2|KDM5A	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	639.309432	1276.60431	-0.64857	-0.00041464	1.3759	0.0008796	0.72728	0.00046496	639.3101824483913	50.362	0.8184	50.362	49.845	50.663	0	-0.073026	0.00061764	NaN	49.554	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3452600	+		28841	16620	20596	20762							-0.022927767199007576
LDGVMMLEELQ	11	Unmodified	_LDGVMMLEELQ_					0	0	0			REV__nc|ENSG00000073614|P29375-2|KDM5A	REV__nc|ENSG00000073614|P29375-2|KDM5A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	639.309432	1276.60431	-1.0283	-0.00065739	0.76342	0.00048806	-0.26487	-0.00016933	639.3098553932238	49.754	0.61103	50.508	50.193	50.804	0.75406	0.073026	-0.00016544	NaN	49.554	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4019800	+		28842	16620	20596	20762							-0.022927767199007576
LDHECRPGAF	10	Unmodified	_LDHECRPGAF_					0	0	0			REV__ENSG00000090932|ENST00000356433|DLL3	REV__ENSG00000090932|ENST00000356433|DLL3	MULTI-MSMS	A375_MHC_IP_R2	2	573.678955078125	2	572.76384	1143.51313	-0.15257	-8.7387E-05	-1.7316	-0.00099182	-1.8842	-0.0010792	572.7600363837511	109.33	0.76096	110.08	109.67	110.43	0.74684					24	14	3	0	0	0	0.70146	1	41316	41316		11.64	0	1	934670	+		28843	16936	20597	20763	28254	28254					-0.05288859582378791
LDHEYDDD	8	Unmodified	_LDHEYDDD_					0	0	0		nc|ENSG00000146352|Q5SYC1-2|CLVS2;ENSG00000146352|ENST00000275162|CLVS2	nc|ENSG00000146352|Q5SYC1-2|CLVS2	nc|ENSG00000146352|Q5SYC1-2|CLVS2	MSMS	A375_MHC_IP_R2	2	511.1780090332031	2	511.190894	1020.36723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.63	1	101.39	100.89	101.89	0.76278								0	0	0	0.16876	1	38153	38153		5.2307	0	1				28844	5616	20598	20764	28255	28255					-0.1421346361742053
LDHFITLPHS	10	Unmodified	_LDHFITLPHS_					0	0	0			REV__ENST00000503602.6_1_12:1086253-1099126:-|nuORF	REV__ENST00000503602.6_1_12:1086253-1099126:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	394.2764892578125	3	393.876746	1178.60841	-0.42241	-0.00016638	-0.080099	-3.1549E-05	-0.50251	-0.00019793	393.8766595585662	56.173	0.56189	56.923	56.642	57.203	0.75015					15	10	2	0	0	0	0.94163	1	21233	21233		1.7423	0	1	3910700	+		28845	25518	20599	20765	28256	28256					0.026248168803249428
LDHHLGRL	8	Unmodified	_LDHHLGRL_					0	0	0			REV__ENST00000552365.1_1_12:53874968-53878035:-|nuORF	REV__ENST00000552365.1_1_12:53874968-53878035:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	481.1716003417969	2	480.772326	959.530098	-0.89546	-0.00043051	0.33437	0.00016076	-0.56108	-0.00026975	480.7724640542288	38.243	0.71371	39.018	38.739	39.453	0.77451					37	13	4	0	0	0	0.50167	1	14019	14019		42.095	18.074	1	63383000	+		28846	19168	20600	20766	28257	28257					0.04871429085756063
LDHISRVTW	9	Unmodified	_LDHISRVTW_					0	0	0			REV__ENSG00000242689|ENST00000361987|CNTF	REV__ENSG00000242689|ENST00000361987|CNTF	MULTI-SECPEP	A375_MHC_IP_R1	1	564.1852416992188	2	563.803823	1125.59309	-0.46515	-0.00026226	0.11523	6.4969E-05	-0.34992	-0.00019729	563.8036270377755	83.558	0.50948	83.558	83.226	83.736	0					15	9	2	0	0	0	0.76827	1	30528	30528		3.5965	3.2459	1	1857300	+		28847	22800	20601	20767	28258	28258					0.035319500831292316
LDHKRQGRPS	10	Unmodified	_LDHKRQGRPS_					0	0	0		nc|ENSG00000188158|Q6T4R5-4|NHS;nc|ENSG00000188158|Q6T4R5-3|NHS;nc|ENSG00000188158|Q6T4R5-2|NHS;ENSG00000188158|ENST00000676302|NHS	nc|ENSG00000188158|Q6T4R5-4|NHS	nc|ENSG00000188158|Q6T4R5-4|NHS	MULTI-SECPEP	A375_MHC_IP_R2	2	398.9714660644531	3	398.554777	1192.6425	0.10986	4.3787E-05	-0.19308	-7.6953E-05	-0.083217	-3.3166E-05	398.5547986200389	47.235	0.45879	47.996	47.715	48.174	0.76128					14	8	2	0	0	0	0.87163	1	17710	17710		5.4027	0	1	2980500			28848	8888	20602	20768	28259	28259					0.05388658091965226
LDHLKSLIKE	10	Unmodified	_LDHLKSLIKE_					0	0	0		nc|ENSG00000005436|P16383-2|GCFC2;ENSG00000005436|ENST00000321027|GCFC2	nc|ENSG00000005436|P16383-2|GCFC2	nc|ENSG00000005436|P16383-2|GCFC2	MULTI-MSMS	A375_MHC_IP_R1	1	399.63995361328125	3	399.239684	1194.69722	-0.072156	-2.8807E-05	0.45721	0.00018254	0.38505	0.00015373	399.239767287441	35.324	0.40668	35.324	35.116	35.522	0					15	7	3	0	0	0	0.72006	1	11776	11776		3.3196	0	1	2541600			28849	892	20603	20769	28260	28260					0.10766232119999586
LDHLKSLIKE	10	Unmodified	_LDHLKSLIKE_					0	0	0		nc|ENSG00000005436|P16383-2|GCFC2;ENSG00000005436|ENST00000321027|GCFC2	nc|ENSG00000005436|P16383-2|GCFC2	nc|ENSG00000005436|P16383-2|GCFC2	MULTI-MATCH	A375_MHC_IP_R2	2		3	399.239684	1194.69722	-0.38362	-0.00015316	-0.11061	-4.416E-05	-0.49424	-0.00019732	399.2395097467995	34.228	0.35793	34.98	34.853	35.211	0.75225	-0.17168	-0.00044964	NaN	3.3196	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2281700			28850	892	20603	20769							0.10766232119999586
LDHLLRWRQRH	11	Unmodified	_LDHLLRWRQRH_					0	0	0			REV__SLC12A8|p.G63Dfs*82|1|0.15|ENSG00000221955|chr3:125190385-125190386|-/CAGT|frameshift_variant	REV__SLC12A8|p.G63Dfs*82|1|0.15|ENSG00000221955|chr3:125190385-125190386|-/CAGT|frameshift_variant	MSMS	A375_MHC_IP_R2	2	765.4318237304688	2	765.43165	1528.84875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.704	1	96.455	95.955	96.955	0.75045								0	0	0	0.16297	1	36350	36350		3.2813	1.9518	1		+		28851	25147	20604	20770	28261	28261					0.10547650991065893
LDHPNVLKF	9	Unmodified	_LDHPNVLKF_					0	0	0		nc|ENSG00000182541|P53671-2|LIMK2;ENSG00000182541|ENST00000331728|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	MULTI-SECPEP	A375_MHC_IP_R1	1	541.5755615234375	2	541.803291	1081.59203	-0.59844	-0.00032424	0.22964	0.00012442	-0.3688	-0.00019982	541.8033349655766	59.514	0.55864	59.514	59.143	59.701	0					14	10	2	0	0	0	0.7713	1	21463	21463		8.1555	4.559	1	1259200			28852	8415	20605	20771	28262	28262					0.054497357142281544
LDHPNVLKF	9	Unmodified	_LDHPNVLKF_					0	0	0		nc|ENSG00000182541|P53671-2|LIMK2;ENSG00000182541|ENST00000331728|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	MULTI-MATCH	A375_MHC_IP_R2	2		2	541.803291	1081.59203	-1.1628	-0.00063	1.0326	0.00055949	-0.13015	-7.0514E-05	542.3057903993953	58.54	0.45907	59.289	59.032	59.491	0.74894	-0.11273	0.00042756	NaN	8.1555	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	867840			28853	8415	20605	20771							0.054497357142281544
LDHQWALFEE	10	Unmodified	_LDHQWALFEE_					0	0	0			REV__ENSG00000111725|ENST00000229328|PRKAB1	REV__ENSG00000111725|ENST00000229328|PRKAB1	MSMS	A375_MHC_IP_R2	2	644.4296875	2	644.303852	1286.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.305	1	79.048	78.548	79.548	0.74293								0	0	0	0.15435	1	29735	29735		6.7232	0	1		+		28854	17690	20606	20772	28263	28263					-0.03868094707536329
LDHSDPITRDH	11	Unmodified	_LDHSDPITRDH_					0	0	0		nc|ENSG00000038358|Q6P2E9-2|EDC4;ENSG00000038358|ENST00000358933|EDC4;ENST00000572067.1_1_16:67917790-67918048:+|nuORF	nc|ENSG00000038358|Q6P2E9-2|EDC4	nc|ENSG00000038358|Q6P2E9-2|EDC4	MSMS	A375_MHC_IP_R1	1	653.3117065429688	2	653.31274	1304.61093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.27	1	122.27	121.77	122.77	0								0	0	0	0.16203	1	45483	45483		8.1555	1.9497	1				28855	1152	20607	20773	28264	28264					-0.029193794526918282
LDHSYDPDF	9	Unmodified	_LDHSYDPDF_					0	0	0		ENSG00000068438|ENST00000348411|FTSJ1;ENST00000467954.5_1_X:48339852-48341236:+|nuORF;ENST00000490202.5_1_X:48339880-48341236:+|nuORF	ENSG00000068438|ENST00000348411|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	MSMS	A375_MHC_IP_R1	1	554.6954956054688	2	554.732729	1107.4509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.453	1	93.453	92.953	93.953	0								0	0	0	0.15486	1	34352	34352		7.9102	0.62092	1				28856	1461	20608	20774	28265	28265					-0.0985230744972796
LDHTYQELF	9	Unmodified	_LDHTYQELF_					0	0	0		nc|ENSG00000108021|Q5VWN6-2|TASOR2;ENSG00000108021|ENST00000695737|TASOR2	nc|ENSG00000108021|Q5VWN6-2|TASOR2	nc|ENSG00000108021|Q5VWN6-2|TASOR2	MULTI-SECPEP	A375_MHC_IP_R2	2	389.2923889160156	3	389.188989	1164.54514	-0.30383	-0.00011825	0.53547	0.0002084	0.23164	9.015E-05	389.1891535217665	35.952	0.35664	36.716	36.537	36.894	0.76338					11	6	2	0	0	0	0.7911	1	13036	13036		2.2828	0	1	1851000			28857	2779	20609	20775	28266	28266					-0.03055168627565763
LDHVIPQL	8	Unmodified	_LDHVIPQL_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-SECPEP	A375_MHC_IP_R1	1	467.14532470703125	2	467.77146	933.528367	-0.121	-5.6599E-05	0.30309	0.00014177	0.18209	8.5176E-05	467.77136185952145	53.887	0.30584	53.887	53.707	54.013	0					7	5	2	0	0	0	0.91495	1	19196	19196		18.135	11.412	1	1152800	+		28858	22284	20610	20776	28267	28267					0.05894375277148356
LDHWMCEL	8	Unmodified	_LDHWMCEL_					0	0	0			REV__ENST00000487796.2_1_10:135113993-135116378:-|nuORF	REV__ENST00000487796.2_1_10:135113993-135116378:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	523.189697265625	2	523.725338	1045.43612	-0.41237	-0.00021597	-1.652	-0.00086519	-2.0644	-0.0010812	524.2254768473052	96.715	1.7755	96.715	95.968	97.743	0					37	34	2	0	0	0	0.972	1	35738	35738		5.2307	5.2307	1	903130	+		28859	25339	20611	20777	28268	28268					-0.08477794123041349
LDIARQDRLV	10	Unmodified	_LDIARQDRLV_					0	0	0			REV__nc|ENSG00000111846|Q8N0V5-3|GCNT2	REV__nc|ENSG00000111846|Q8N0V5-3|GCNT2	MSMS	A375_MHC_IP_R2	2	400.1383361816406	3	400.234933	1197.68297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.137	1	95.887	95.387	96.387	0.75045								0	0	0	0.15531	1	36144	36144		3.5871	0.26742	1		+		28860	27174	20612	20778	28269	28269					0.09203579691711639
LDIDGVRKII	10	Unmodified	_LDIDGVRKII_					0	0	0		nc|ENSG00000171723|Q9NQX3|GPHN;ENSG00000171723|ENST00000478722|GPHN	nc|ENSG00000171723|Q9NQX3|GPHN	nc|ENSG00000171723|Q9NQX3|GPHN	MULTI-SECPEP	A375_MHC_IP_R1	1	381.90045166015625	3	381.236163	1140.68666	0.32155	0.00012259	1.5923	0.00060703	1.9138	0.00072962	381.23676002146055	23.169	0.55804	23.169	22.873	23.432	0					16	10	2	0	0	0	0.83425	1	6326	6326		14.957	2.0846	1	2725000			28861	7632	20613	20779	28270	28270					0.12194249465574103
LDIKPWDNE	9	Unmodified	_LDIKPWDNE_					0	0	0		ENST00000580496.1_1_17:61713981-61714308:+|nuORF	ENST00000580496.1_1_17:61713981-61714308:+|nuORF	ENST00000580496.1_1_17:61713981-61714308:+|nuORF	MSMS	A375_MHC_IP_R1	1	565.2060546875	2	565.279846	1128.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.993	1	62.993	62.493	63.493	0								0	0	0	0.15069	1	22761	22761		20.454	3.3407	1				28862	13674	20614	20780	28271	28271					-0.013991686275858228
LDIKVPIFK	9	Unmodified	_LDIKVPIFK_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	A375_MHC_IP_R1	1	358.6302795410156	3	358.230349	1071.66922	-0.084468	-3.0259E-05	0.048675	1.7437E-05	-0.035792	-1.2822E-05	358.23024921737806	80.75	0.40641	80.75	80.541	80.948	0					14	7	2	0	0	0	0.72761	1	29540	29540		4.5289	0	1	1667500			28863	3055	20615	20781	28272	28272					0.13624953930570882
LDIKVPIFK	9	Unmodified	_LDIKVPIFK_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	A375_MHC_IP_R2	2	358.63006591796875	3	358.230349	1071.66922	-0.13995	-5.0134E-05	-0.65432	-0.0002344	-0.79426	-0.00028453	358.2300970384038	79.775	0.40836	80.519	80.249	80.657	0.74474					13	7	2	0	0	0	0.73815	1	30292	30292		3.5871	0.26742	1	2214300			28864	3055	20615	20781	28273	28273					0.13624953930570882
LDIKVPIFK	9	Unmodified	_LDIKVPIFK_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	358.230349	1071.66922	-0.13995	-5.0134E-05	-0.65432	-0.0002344	-0.79426	-0.00028453	358.2300970384038	79.775	0.40836	80.519	80.249	80.657	0.74474	-0.11514	-0.0002555	NaN	4.5289	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2214300			28865	3055	20615	20781							0.13624953930570882
LDINQIQRPV	10	Unmodified	_LDINQIQRPV_					0	0	0		nc|ENSG00000155066|Q8N271-2|PROM2	nc|ENSG00000155066|Q8N271-2|PROM2	nc|ENSG00000155066|Q8N271-2|PROM2	MULTI-SECPEP	A375_MHC_IP_R2	2	399.13031005859375	3	399.2313	1194.67207	-0.16482	-6.5802E-05	-1.4094	-0.00056269	-1.5743	-0.00062849	399.23177550882144	65.296	0.91312	66.035	65.562	66.475	0.73812					32	17	4	0	0	0	0.94651	1	24786	24786		1.7423	0.14999	1	940970			28866	14692	20616	20782	28274	28274					0.082521773173994
LDIPDKTNVGQ	11	Unmodified	_LDIPDKTNVGQ_					0	0	0		nc|ENSG00000189195|Q5XKL5-4|BTBD8;nc|ENSG00000189195|Q5XKL5|BTBD8	nc|ENSG00000189195|Q5XKL5-4|BTBD8	nc|ENSG00000189195|Q5XKL5-4|BTBD8	MULTI-SECPEP	A375_MHC_IP_R1	1	600.7167358398438	2	600.31696	1198.61937	-0.55152	-0.00033108	0.066105	3.9684E-05	-0.48541	-0.0002914	600.3171215946093	66.212	0.65807	66.212	65.871	66.529	0					28	12	4	0	0	0	0.9574	1	23928	23928		6.6304	6.6304	1	5861600			28867	14830	20617	20783	28275	28275					0.028001744639368553
LDIPEKWN	8	Unmodified	_LDIPEKWN_					0	0	0		nc|ENSG00000086475|P49903-2|SEPHS1;nc|ENSG00000086475|P49903-4|SEPHS1;nc|ENSG00000086475|P49903-3|SEPHS1;ENSG00000086475|ENST00000327347|SEPHS1	nc|ENSG00000086475|P49903-2|SEPHS1	nc|ENSG00000086475|P49903-2|SEPHS1	MSMS	A375_MHC_IP_R1	1	507.6977233886719	2	507.766374	1013.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.107	1	68.107	67.607	68.607	0								0	0	0	0.16876	1	24687	24687		25.399	4.9457	1				28868	1836	20618	20784	28276	28276					0.01197767551900597
LDIRKKRLQLK	11	Unmodified	_LDIRKKRLQLK_					0	0	0		ENSG00000153044|ENST00000283006|CENPH	ENSG00000153044|ENST00000283006|CENPH	ENSG00000153044|ENST00000283006|CENPH	MSMS	A375_MHC_IP_R2	2	706.2110595703125	2	705.967003	1409.91945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.493	1	91.227	90.727	91.727	0.7345								0	0	0	0.16354	1	34432	34432		0.30703	0	1				28869	6000	20619	20785	28277	28277					0.23088931256029355
LDIVKLRKF	9	Unmodified	_LDIVKLRKF_					0	0	0			REV__ENSG00000196664|ENST00000380659|TLR7	REV__ENSG00000196664|ENST00000380659|TLR7	MULTI-MSMS	A375_MHC_IP_R1	1	378.31304931640625	3	377.913131	1130.71756	0.60215	0.00022756	0.088926	3.3606E-05	0.69107	0.00026117	377.9130720826611	69.021	0.40487	69.021	68.819	69.224	0					19	7	3	0	0	0	0.1915	1	25046	25046		38.615	13.624	1	2991700	+		28870	22220	20620	20786	28278	28278					0.15743447570457647
LDIVKLRKF	9	Unmodified	_LDIVKLRKF_					0	0	0			REV__ENSG00000196664|ENST00000380659|TLR7	REV__ENSG00000196664|ENST00000380659|TLR7	MULTI-MSMS	A375_MHC_IP_R2	2	378.31329345703125	3	377.913131	1130.71756	0.2384	9.0094E-05	0.13576	5.1306E-05	0.37416	0.0001414	377.91303188457744	67.957	0.55916	68.693	68.459	69.018	0.73511					24	10	3	0	0	0	0.1915	1	25761	25761		38.615	13.624	1	3654100	+		28871	22220	20620	20786	28279	28279					0.15743447570457647
LDIVKLRKF	9	Unmodified	_LDIVKLRKF_					0	0	0			REV__ENSG00000196664|ENST00000380659|TLR7	REV__ENSG00000196664|ENST00000380659|TLR7	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	377.913131	1130.71756	0.60215	0.00022756	0.088926	3.3606E-05	0.69107	0.00026117	377.9130720826611	69.021	0.40487	69.021	68.819	69.224	0	0.16445	-2.238E-05	NaN	38.615	19	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2991700	+		28872	22220	20620	20786							0.15743447570457647
LDIVKLRKF	9	Unmodified	_LDIVKLRKF_					0	0	0			REV__ENSG00000196664|ENST00000380659|TLR7	REV__ENSG00000196664|ENST00000380659|TLR7	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	377.913131	1130.71756	0.2384	9.0094E-05	0.13576	5.1306E-05	0.37416	0.0001414	377.91303188457744	67.957	0.55916	68.693	68.459	69.018	0.73511	-0.16445	3.0719E-05	NaN	38.615	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3654100	+		28873	22220	20620	20786							0.15743447570457647
LDIVLKVLK	9	Unmodified	_LDIVLKVLK_					0	0	0		ENSG00000171495|ENST00000399564|MROH2B;nc|ENSG00000171495|Q7Z745-2|MROH2B;MROH2B|p.F675L|1|0.24|ENSG00000171495|chr5:41039484-41039484|G/T|missense_variant	ENSG00000171495|ENST00000399564|MROH2B	ENSG00000171495|ENST00000399564|MROH2B	MULTI-SECPEP	A375_MHC_IP_R1	1	1041.2855224609375	1	1040.70779	1039.70052	-0.44344	-0.00046149	2.4745	0.0025752	2.031	0.0021137	1041.7084668786044	123.16	0.20226	123.16	123.03	123.23	0					5	3	2	0	0	0	0.81254	1	46005	46005		0.52476	0	1	34645000			28874	7610	20621	20787	28280	28280					0.18225526964647543
LDIWVIVLIIL	11	Unmodified	_LDIWVIVLIIL_					0	0	0		ENSG00000256235|ENST00000526627|SMIM3	ENSG00000256235|ENST00000526627|SMIM3	ENSG00000256235|ENST00000526627|SMIM3	MSMS	A375_MHC_IP_R1	1	655.5323486328125	2	655.428325	1308.8421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.33	1	107.33	106.83	107.83	0								0	0	0	0.16334	1	39385	39385		1.3295	0	1				28875	9896	20622	20788	28281	28281					0.20002900267127188
LDIYREPILVK	11	Unmodified	_LDIYREPILVK_					0	0	0			REV__ENSG00000143850|ENST00000272203|PLEKHA6	REV__ENSG00000143850|ENST00000272203|PLEKHA6	MSMS	A375_MHC_IP_R2	2	679.8106079101562	2	679.905745	1357.79694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.25	1	110.99	110.49	111.49	0.73692								0	0	0	0.16302	1	41593	41593		2.9952	0	1		+		28876	19393	20623	20789	28282	28282					0.13235049733930282
LDIYTFRYIVP	11	Unmodified	_LDIYTFRYIVP_					0	0	0		ENST00000371558.6_1_X:118718085-118718250:+|nuORF	ENST00000371558.6_1_X:118718085-118718250:+|nuORF	ENST00000371558.6_1_X:118718085-118718250:+|nuORF	MSMS	A375_MHC_IP_R1	1	700.4359741210938	2	700.384645	1398.75474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.22	1	119.22	118.72	119.72	0								0	0	0	0.16191	1	44025	44025		15.248	7.6395	1				28877	11177	20624	20790	28283	28283					0.07131074325570808
LDKALVENY	9	Unmodified	_LDKALVENY_					0	0	0			REV__tr|U7SFQ8|U7SFQ8_FUSNUUridylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrHPE=3SV=1	REV__tr|U7SFQ8|U7SFQ8_FUSNUUridylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrHPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	533.22607421875	2	532.784764	1063.55498	-0.75319	-0.00040129	-2.2164	-0.0011809	-2.9696	-0.0015821	533.2844622460262	44.526	0.71074	45.295	44.883	45.594	0.7691					18	13	2	0	0	0	0.67483	1	16619	16619		14.838	0	1	2478500	+		28878	28169	20625	20791	28284	28284					0.025740193777892273
LDKATVPIIK	10	Unmodified	_LDKATVPIIK_					0	0	0		ENSG00000121274|ENST00000561678|TENT4B;ENST00000562717.1_1_16:50188117-50258568:+|nuORF;nc|ENSG00000121274|Q8NDF8-4|TENT4B;nc|ENSG00000121274|Q8NDF8-2|TENT4B;nc|ENSG00000121274|Q8NDF8|TENT4B;nc|ENSG00000121274|Q8NDF8-3|TENT4B;nc|ENSG00000121274|Q8NDF8-5|TENT4B;nc|ENSG00000112941|Q5XG87-2|TENT4A;ENSG00000112941|ENST00000230859|TENT4A	ENSG00000121274|ENST00000561678|TENT4B;nc|ENSG00000112941|Q5XG87-2|TENT4A	nc|ENSG00000112941|Q5XG87-2|TENT4A	MULTI-MSMS	A375_MHC_IP_R2	2	367.24505615234375	3	366.569142	1096.6856	-0.20503	-7.5159E-05	0.40543	0.00014862	0.2004	7.3459E-05	366.90436622973135	24.42	0.81121	25.063	24.653	25.465	0.64368					31	15	3	0	0	0	0.7086	1	8108	8108		8.4443	0.49891	1	10726000			28879	3119;3714	20626	20792	28285	28285					0.14112035096650288
LDKCLKML	8	Unmodified	_LDKCLKML_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-SECPEP	A375_MHC_IP_R1	1	482.6717224121094	2	482.271924	962.529295	-0.31014	-0.00014957	0.40719	0.00019638	0.097059	4.6809E-05	482.27202122759763	33.569	0.50732	33.569	33.241	33.748	0					18	9	3	0	0	0	0.8957	1	10980	10980		15.847	1.0089	1	7704700			28880	1262	20627	20793	28286	28286					0.04653130330177646
LDKEEKEKDWY	11	Unmodified	_LDKEEKEKDWY_					0	0	0		nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC;nc|ENSG00000134982|P25054-2|APC;APC|p.T1556Nfs*3|1|0.92|ENSG00000134982|chr5:112840254-112840255|-/A|frameshift_variant;APC|p.A703Qfs*15|1|0.94|ENSG00000134982|chr5:112837697-112837697|G/-|frameshift_variant;APC|p.H298Lfs*6|1|0.67|ENSG00000134982|chr5:112815552-112815555|CACT/-|frameshift_variant	nc|ENSG00000134982|P25054-3|APC	nc|ENSG00000134982|P25054-3|APC	MULTI-SECPEP	A375_MHC_IP_R1	1	495.6607360839844	3	494.908551	1481.70382	-0.39219	-0.0001941	-1.9215	-0.00095098	-2.3137	-0.0011451	495.24182395593476	54.976	0.45623	54.976	54.72	55.177	0					13	8	2	0	0	0	0.99332	1	19650	19650		4.4062	0	1	2262000			28881	4632	20628	20794	28287	28287					-0.017759195099415592
LDKEKNTDTY	10	Unmodified	_LDKEKNTDTY_					0	0	0		tr|U7SS49|U7SS49_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01543PE=3SV=1	tr|U7SS49|U7SS49_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01543PE=3SV=1	tr|U7SS49|U7SS49_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01543PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	613.4581909179688	2	613.7986	1225.58265	-0.4489	-0.00027554	-0.52257	-0.00032075	-0.97147	-0.00059629	613.7981062298852	47.745	1.112	48.506	48.174	49.286	0.76128					35	21	2	0	0	0	0.70651	1	17864	17864		9.3831	0.63772	1	7769600			28882	29625	20629	20795	28288	28288					-0.021121221526072986
LDKELVKKV	9	Unmodified	_LDKELVKKV_					0	0	0			REV__tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	REV__tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	358.92083740234375	3	357.897258	1070.66995	-0.4751	-0.00017004	-0.56184	-0.00020108	-1.0369	-0.00037112	357.89708475220397	18.955	1.3731	19.559	19.423	20.796	0.60308					80	28	6	0	0	0	0.62591	1	5832	5832		13.615	0.74226	1	1638599999.9999998	+		28883	28534	20630	20796	28289	28289					0.1374374857962266
LDKERENGD	9	Unmodified	_LDKERENGD_					0	0	0			REV__ENST00000519163.6_1_8:68024275-68026118:+|nuORF	REV__ENST00000519163.6_1_8:68024275-68026118:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	358.93707275390625	3	359.171999	1074.49417	-0.22289	-8.0057E-05	2.6653	0.00095729	2.4424	0.00087724	359.17314279385647	26.601	0.55414	26.601	26.423	26.978	0					21	10	3	0	0	0	0.76187	1	7904	7904		4.5289	0	1	5401900	+		28884	25682	20631	20797	28290	28290					-0.040101176724192555
LDKFREILL	9	Unmodified	_LDKFREILL_					0	0	0		ENSG00000079689|ENST00000377961|SCGN;SCGN|p.D241N|1|0.55|ENSG00000079689|chr6:25701225-25701225|G/A|missense_variant	ENSG00000079689|ENST00000377961|SCGN	ENSG00000079689|ENST00000377961|SCGN	MULTI-SECPEP	A375_MHC_IP_R2	2	573.1299438476562	2	573.847699	1145.68084	-0.16118	-9.2491E-05	0.48612	0.00027896	0.32494	0.00018647	573.8479712986497	63.935	0.35409	64.675	64.446	64.8	0.74022					10	6	2	0	0	0	0.7911	1	24277	24277		3.9444	0	1	690140			28885	1700	20632	20798	28291	28291					0.11383150953906807
LDKGFRVSID	10	Unmodified	_LDKGFRVSID_					0	0	0			REV__ENST00000476399.5_1_7:23776595-23810746:+|nuORF	REV__ENST00000476399.5_1_7:23776595-23810746:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	383.9187927246094	3	383.880267	1148.61897	-0.046058	-1.7681E-05	0.10744	4.1244E-05	0.061383	2.3564E-05	383.88035697094426	42.463	0.50891	43.236	43.014	43.523	0.7724					16	9	3	0	0	0	0.62015	1	15771	15771		12.856	0.6812	1	2725400	+		28886	22181	20633	20799	28292	28292					0.05060799534749094
LDKGFRVSID	10	Unmodified	_LDKGFRVSID_					0	0	0			REV__ENST00000476399.5_1_7:23776595-23810746:+|nuORF	REV__ENST00000476399.5_1_7:23776595-23810746:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	383.880267	1148.61897	0.45392	0.00017425	-0.038644	-1.4835E-05	0.41527	0.00015941	383.8801605248693	43.309	0.45884	43.309	43.043	43.502	0	0.036784	-0.00010272	NaN	12.856	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1909400	+		28887	22181	20633	20799							0.05060799534749094
LDKGRAAL	8	Unmodified	_LDKGRAAL_					0	0	0			REV__nc|ENSG00000171790|Q499Z3-4|SLFNL1	REV__nc|ENSG00000171790|Q499Z3-4|SLFNL1	MULTI-MSMS	A375_MHC_IP_R2	2	422.65570068359375	2	422.255977	842.497401	-0.16432	-6.9387E-05	0.031739	1.3402E-05	-0.13259	-5.5985E-05	422.2559400962307	39.754	0.40702	40.529	40.32	40.727	0.77451					17	7	3	0	0	0	0.68964	1	14710	14710		37.974	1.847	1	3786500	+		28888	21093	20634	20800	28293	28293					0.06985221962884225
LDKKDKTIIL	10	Unmodified	_LDKKDKTIIL_					0	0	0			REV__tr|U7SGM1|U7SGM1_FUSNUHTHlysR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02239PE=3SV=1	REV__tr|U7SGM1|U7SGM1_FUSNUHTHlysR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02239PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	594.136474609375	2	593.873914	1185.73327	-0.30791	-0.00018286	-2.391	-0.00142	-2.6989	-0.0016028	594.3751351946894	89.246	0.30396	89.246	89.019	89.323	0					7	5	2	0	0	0	0.93799	1	32797	32797		3.5965	0	1	1567900	+		28889	28188	20635	20801	28294	28294					0.14783689296859848
LDKKVEKV	8	Unmodified	_LDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;HSP90AB1|p.I628Sfs*56|1|0.12|ENSG00000096384|chr6:44253195-44253195|A/-|frameshift_variant;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	A375_MHC_IP_R1	1	480.3038024902344	2	479.800217	957.585882	-0.40831	-0.00019591	0.12382	5.9411E-05	-0.28448	-0.00013649	479.8002263707158	20.054	0.60866	20.054	19.776	20.384	0					28	11	3	0	0	0	0.2481	1	5107	5107		63.227	5.5055	1	13995000			28890	2057	20636	20802	28295	28295					0.10539217482710228
LDKLCWTESAK	11	Unmodified	_LDKLCWTESAK_					0	0	0		nc|ENSG00000069535|P27338-2|MAOB;ENSG00000069535|ENST00000378069|MAOB	nc|ENSG00000069535|P27338-2|MAOB	nc|ENSG00000069535|P27338-2|MAOB	MULTI-SECPEP	A375_MHC_IP_R2	2	431.287841796875	3	431.888434	1292.64347	-0.41342	-0.00017855	3.6707	0.0015853	3.2573	0.0014068	431.89170408751914	71.148	0.30556	71.883	71.756	72.061	0.73421					6	5	2	0	0	0	0.99331	1	27049	27049		0.36667	0.25874	1	736600			28891	1478	20637	20803	28296	28296					0.008856916259674108
LDKLERQHVDR	11	Unmodified	_LDKLERQHVDR_					0	0	0			REV__ENSG00000100629|ENST00000555265|CEP128	REV__ENSG00000100629|ENST00000555265|CEP128	MULTI-MSMS	A375_MHC_IP_R2	2	704.793212890625	2	704.886407	1407.75826	-0.60484	-0.00042634	2.0162	0.0014212	1.4113	0.00099484	704.8879081152096	117.8	0.55666	118.41	117.99	118.54	0.60909					16	10	2	0	0	0	0.73189	1	44465	44465		7.1017	0.37856	1	32236000	+		28892	17114	20638	20804	28297	28297					0.07069137152120675
LDKLISLFY	9	Unmodified	_LDKLISLFY_					0	0	0		ENSG00000204246|ENST00000641090|OR13C3;nc|ENSG00000204246|Q8NGS6|OR13C3	ENSG00000204246|ENST00000641090|OR13C3	ENSG00000204246|ENST00000641090|OR13C3	MULTI-MSMS	A375_MHC_IP_R1	1	556.7073364257812	2	556.323525	1110.6325	-0.42419	-0.00023599	-1.6753	-0.00093204	-2.0995	-0.001168	556.8242996770784	125.88	0.19964	125.88	125.8	126	0					5	3	2	0	0	0	0.3489	1	47993	47993		36.127	0	1	7793700			28893	9418	20639	20805	28298	28298					0.0816065731398794
LDKLLSIE	8	Unmodified	_LDKLLSIE_					0	0	0			REV__SRL|p.E316K|1|0.3|ENSG00000185739|chr16:4192629-4192629|C/T|missense_variant	REV__SRL|p.E316K|1|0.3|ENSG00000185739|chr16:4192629-4192629|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	465.6864929199219	2	465.778951	929.543348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.72	1	107.72	107.22	108.22	0								0	0	0	0.14605	1	39525	39525		49.933	2.1843	1		+		28894	28045	20640	20806	28299	28299					0.07575822354465345
LDKLMYPYLYL	11	Unmodified	_LDKLMYPYLYL_					0	0	0			REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	478.58355712890625	3	477.924597	1430.75196	-0.50129	-0.00023958	-0.36586	-0.00017485	-0.86715	-0.00041443	478.258767517536	64.239	0.30324	64.239	64.09	64.393	0					6	5	2	0	0	0	0.99916	1	23225	23225		1.1098	0.18422	1	690090	+		28895	28544	20641	20807	28300	28300					0.053814828763961486
LDKLVEIYK	9	Unmodified	_LDKLVEIYK_					0	0	0		tr|U7STV9|U7STV9_FUSNUBiotinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioBPE=3SV=1	tr|U7STV9|U7STV9_FUSNUBiotinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioBPE=3SV=1	tr|U7STV9|U7STV9_FUSNUBiotinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioBPE=3SV=1	MSMS	A375_MHC_IP_R2	2	374.2768859863281	3	374.225264	1119.65396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.841	1	36.604	36.104	37.104	0.76338								0	0	0	0.15486	1	13021	13021		7.609	0	1				28896	29717	20642	20808	28301	28301					0.09892042342698915
LDKLVKSRFPE	11	Unmodified	_LDKLVKSRFPE_					0	0	0			REV__ENSG00000173599|ENST00000393960|PC	REV__ENSG00000173599|ENST00000393960|PC	MSMS	A375_MHC_IP_R1	1	666.2914428710938	2	666.387719	1330.76089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.8	1	102.8	102.3	103.3	0								0	0	0	0.16297	1	37778	37778		3.2813	0.28607	1		+		28897	21235	20643	20809	28302	28302					0.10873592557072698
LDKNETNY	8	Unmodified	_LDKNETNY_					0	0	0			REV__ENSG00000169340|ENST00000302451|PDILT	REV__ENSG00000169340|ENST00000302451|PDILT	MSMS	A375_MHC_IP_R2	2	498.29901123046875	2	498.735271	995.45599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.919	1	89.651	89.151	90.151	0.7318								0	0	0	0.16876	1	33843	33843		7.9102	0	1		+		28898	20925	20644	20810	28303	28303					-0.04192003587104409
LDKNSELLSLI	11	Unmodified	_LDKNSELLSLI_					0	0	0			REV__ENST00000457660.6_1_11:62649366-62653989:+|nuORF	REV__ENST00000457660.6_1_11:62649366-62653989:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	623.2581176757812	2	622.85846	1243.70237	-0.77231	-0.00048104	0.47816	0.00029783	-0.29415	-0.00018321	622.8586325482645	96.334	0.55872	97.084	96.754	97.313	0.75045					23	10	3	0	0	0	0.040044	1	36560	36560		91.085	5.3204	1	7833900	+		28899	20816	20645	20811	28304	28304					0.09026491191980313
LDKQSWEP	8	Unmodified	_LDKQSWEP_					0	0	0			REV__ENST00000491746.5_1_15:42134104-42137535:+|nuORF	REV__ENST00000491746.5_1_15:42134104-42137535:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.1949768066406	2	501.748182	1001.48181	-0.32069	-0.0001609	-0.93828	-0.00047078	-1.259	-0.00063168	501.7481486799682	57.098	1.1202	57.098	56.498	57.618	0					41	21	3	0	0	0	0.81376	1	20349	20349		25.399	7.253	1	4387500	+		28900	22811	20646	20812	28305	28305					-0.018871093448069587
LDKRELLKL	9	Unmodified	_LDKRELLKL_					0	0	0		nc|ENSG00000138346|P51530-2|DNA2;nc|ENSG00000138346|P51530-3|DNA2;nc|ENSG00000138346|P51530-4|DNA2;ENSG00000138346|ENST00000358410|DNA2	nc|ENSG00000138346|P51530-2|DNA2	nc|ENSG00000138346|P51530-2|DNA2	MULTI-SECPEP	A375_MHC_IP_R1	1	377.2649841308594	3	376.576408	1126.70739	0.38466	0.00014485	0.77758	0.00029282	1.1622	0.00043767	376.5768610955335	31.539	0.20198	31.539	31.414	31.616	0					5	3	2	0	0	0	0.7911	1	10081	10081		4.5289	0	1	801650			28901	4980	20647	20813	28306	28306					0.14910839845242663
LDKRGSFFKL	10	Unmodified	_LDKRGSFFKL_					0	0	0		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2;ENST00000467569.5_1_20:19870056-19916128:+|nuORF	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	MULTI-MSMS	A375_MHC_IP_R1	1	404.94903564453125	3	404.236274	1209.68699	-0.22987	-9.2921E-05	0.56306	0.00022761	0.33319	0.00013469	404.23646942707705	45.61	0.60735	45.61	45.384	45.992	0					33	11	4	0	0	0	0.36067	1	15935	15935		25.997	0	1	13657000			28902	4434	20648	20814	28307	28307					0.09053669185436775
LDKRHTVERQR	11	Unmodified	_LDKRHTVERQR_					0	0	0		ENST00000495988.1_1_22:39348813-39349052:+|nuORF	ENST00000495988.1_1_22:39348813-39349052:+|nuORF	ENST00000495988.1_1_22:39348813-39349052:+|nuORF	MSMS	A375_MHC_IP_R2	2	719.4061279296875	2	719.405298	1436.79604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.28	1	110.03	109.53	110.53	0.74684								0	0	0	0.16275	1	41243	41243		5.2969	2.3016	1				28903	12716	20649	20815	28308	28308					0.0951164813759533
LDKRKERKRI	10	Unmodified	_LDKRKERKRI_					0	0	0			REV__ENST00000604081.1_1_12:54388028-54388532:-|nuORF	REV__ENST00000604081.1_1_12:54388028-54388532:-|nuORF	MSMS	A375_MHC_IP_R2	2	671.44482421875	2	671.425502	1340.83645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.173	1	91.908	91.408	92.408	0.7345								0	0	0	0.15591	1	34690	34690		1.6526	0.17072	1		+		28904	26528	20650	20816	28309	28309					0.17966614528018
LDKRKKKKT	9	Unmodified	_LDKRKKKKT_					0	0	0			REV__nc|ENSG00000144029|P82675-2|MRPS5	REV__nc|ENSG00000144029|P82675-2|MRPS5	MSMS	A375_MHC_IP_R2	2	572.8861083984375	2	572.879865	1143.74518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.434	1	84.174	83.674	84.674	0.73962								0	0	0	0.15486	1	31711	31711		3.9444	0	1		+		28905	19405	20651	20817	28310	28310					0.17905350830687894
LDKRLLELF	9	Unmodified	_LDKRLLELF_					0	0	0		ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-SECPEP	A375_MHC_IP_R2	2	383.3009033203125	3	382.900891	1145.68084	-0.031564	-1.2086E-05	0.031069	1.1896E-05	-0.00049507	-1.8956E-07	382.90084728689413	63.862	0.66164	64.602	64.292	64.954	0.74023					22	12	3	0	0	0	0.67471	1	24231	24231		17.443	0	1	3010100			28906	4773	20652	20818	28311	28311					0.11383150953884069
LDKTVYPTNI	10	Unmodified	_LDKTVYPTNI_					0	0	0			REV__nc|ENSG00000278540|Q13085-3|ACACA	REV__nc|ENSG00000278540|Q13085-3|ACACA	MULTI-MSMS	A375_MHC_IP_R1	1	582.2147827148438	2	582.318971	1162.62339	-0.34444	-0.00020058	-0.92486	-0.00053857	-1.2693	-0.00073914	582.3177997785511	39.973	0.86523	39.973	39.744	40.609	0					24	16	3	0	0	0	0.60608	1	13855	13855		20.415	1.1575	1	6544700	+		28907	22979	20653	20819	28312	28312					0.04858263957657982
LDKVKLRML	9	Unmodified	_LDKVKLRML_					0	0	0			REV__ENST00000553407.5_1_12:121840574-121855729:+|nuORF	REV__ENST00000553407.5_1_12:121840574-121855729:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	373.248779296875	3	372.570488	1114.68964	0.31644	0.00011789	2.5486	0.00094953	2.865	0.0010674	372.5711714158344	24.977	0.91372	24.977	24.801	25.714	0					21	17	2	0	0	0	0.79713	1	7259	7259		3.8763	0	1	6320500	+		28908	21011	20654	20820	28313	28313					0.13687801318747006
LDKVLSSRVKS	11	Unmodified	_LDKVLSSRVKS_					0	0	0			REV__ENSG00000187105|ENST00000553558|HEATR4	REV__ENSG00000187105|ENST00000553558|HEATR4	MSMS	A375_MHC_IP_R1	1	411.6356201171875	3	411.250472	1230.72959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.81	1	136.81	136.31	137.31	0								0	0	0	0.16286	1	52684	52684		3.8459	2.2536	1		+		28909	22008	20655	20821	28314	28314					0.12345019522990697
LDKVTKNKVC	10	Unmodified	_LDKVTKNKVC_					0	0	0			REV__ENSG00000253457|ENST00000517349|SMIM18	REV__ENSG00000253457|ENST00000517349|SMIM18	MSMS	A375_MHC_IP_R1	1	383.2808532714844	3	383.221636	1146.64308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.427	1	50.427	49.927	50.927	0								0	0	0	0.15267	1	17865	17865		12.175	2.4105	1		+		28910	22851	20656	20822	28315	28315					0.07562316696794369
LDKWKIVRFIL	11	Unmodified	_LDKWKIVRFIL_					0	0	0			REV__tr|U7SNL5|U7SNL5_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01803PE=4SV=1	REV__tr|U7SNL5|U7SNL5_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01803PE=4SV=1	MSMS	A375_MHC_IP_R2	2	715.8933715820312	2	715.947747	1429.88094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.507	1	93.246	92.746	93.746	0.73902								0	0	0	0.16334	1	35180	35180		1.3295	0	1		+		28911	28335	20657	20823	28316	28316					0.1831962562150693
LDKWRQYI	8	Unmodified	_LDKWRQYI_					0	0	0			REV__ENSG00000177409|ENST00000318238|SAMD9L	REV__ENSG00000177409|ENST00000318238|SAMD9L	MULTI-SECPEP	A375_MHC_IP_R2	2	560.824951171875	2	561.308741	1120.60293	-0.53016	-0.00029758	-0.43958	-0.00024674	-0.96974	-0.00054432	561.3092744889747	92.519	0.45673	93.258	93.089	93.546	0.73902					15	8	2	0	0	0	0.90775	1	35139	35139		20.454	10.38	1	1438900	+		28912	21455	20658	20824	28317	28317					0.047451380885149774
LDKYRSVIR	9	Unmodified	_LDKYRSVIR_					0	0	0		ENSG00000185532|ENST00000373980|PRKG1	ENSG00000185532|ENST00000373980|PRKG1	ENSG00000185532|ENST00000373980|PRKG1	MULTI-SECPEP	A375_MHC_IP_R2	2	383.97900390625	3	383.89614	1148.66659	-0.56576	-0.00021719	0.66179	0.00025406	0.096031	3.6866E-05	383.89641536095604	28.469	0.2035	29.148	29.01	29.214	0.67857					5	3	2	0	0	0	0.7713	1	9845	9845		8.4443	8.4443	1	3830500			28913	8674	20659	20825	28318	28318					0.09820498525596122
LDLARRWAEIK	11	Unmodified	_LDLARRWAEIK_					0	0	0			REV__ENSG00000181004|ENST00000314218|BBS12	REV__ENSG00000181004|ENST00000314218|BBS12	MSMS	A375_MHC_IP_R1	1	457.65338134765625	3	457.601616	1369.78302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.011	1	63.011	62.511	63.511	0								0	0	0	0.16258	1	22767	22767		2.4348	0	1		+		28914	21631	20660	20826	28319	28319					0.1129181702549431
LDLAVQSAP	9	Unmodified	_LDLAVQSAP_					0	0	0			REV__ENST00000520817.5_1_8:41367338-41367521:+|nuORF	REV__ENST00000520817.5_1_8:41367338-41367521:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	457.65338134765625	2	457.2531	912.491647	-0.14814	-6.7737E-05	0.061571	2.8153E-05	-0.086569	-3.9584E-05	457.25312998345987	62.94	0.56416	62.94	62.557	63.121	0					16	10	2	0	0	0	0.46045	1	22767	22767		29.082	12.139	1	1560800	+		28915	25707	20661	20827	28320	28320					0.031900786605774556
LDLCLQIIK	9	Unmodified	_LDLCLQIIK_					0	0	0			REV__ENSG00000153721|ENST00000607772|CNKSR3	REV__ENSG00000153721|ENST00000607772|CNKSR3	MULTI-SECPEP	A375_MHC_IP_R2	2	353.26959228515625	3	353.547461	1057.62055	-0.65107	-0.00023019	-0.069944	-2.4728E-05	-0.72102	-0.00025491	353.5473109766966	34.098	0.40421	34.85	34.5	34.904	0.75225					9	7	2	0	0	0	0.75164	1	12223	12223		3.5871	0	1	2756300	+		28916	19846	20662	20828	28321	28321					0.0940471729913952
LDLDTILKKM	10	Unmodified	_LDLDTILKKM_					0	0	0			REV__tr|U7SUF4|U7SUF4_FUSNUPhosphoglyceratekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgkPE=3SV=1	REV__tr|U7SUF4|U7SUF4_FUSNUPhosphoglyceratekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgkPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	595.1387939453125	2	595.346674	1188.6788	-0.40896	-0.00024347	-1.8045	-0.0010743	-2.2135	-0.0013178	595.3434624430229	110.27	0.25568	111	110.89	111.14	0.73691					6	4	2	0	0	0	0.92957	1	41626	41626		3.2813	1.7994	1	719380	+		28917	28553	20663	20829	28322	28322					0.09200354153790613
LDLEITGTN	9	Unmodified	_LDLEITGTN_					0	0	0			REV__nc|ENSG00000162909|P17655-2|CAPN2	REV__nc|ENSG00000162909|P17655-2|CAPN2	MULTI-MSMS	A375_MHC_IP_R1	1	488.1504821777344	2	488.253297	974.492041	-0.20888	-0.00010199	-1.3797	-0.00067364	-1.5886	-0.00077563	488.2525199935264	40.47	0.61057	40.47	40.05	40.66	0					22	11	2	0	0	0	0.51106	1	13898	13898		19.257	4.4187	1	5566600	+		28918	20322	20664	20830	28323	28323					0.0037745358978327204
LDLEKSRHQ	9	Unmodified	_LDLEKSRHQ_					0	0	0		nc|ENSG00000182271|Q6UXZ0-2|TMIGD1;TMIGD1|p.A227*|1|0.6|ENSG00000182271|chr17:30318867-30318876|AACACATGCA/-|frameshift_variant;ENSG00000182271|ENST00000328886|TMIGD1	nc|ENSG00000182271|Q6UXZ0-2|TMIGD1	nc|ENSG00000182271|Q6UXZ0-2|TMIGD1	MULTI-MSMS	A375_MHC_IP_R2	2	563.704833984375	2	563.304187	1124.59382	-0.51876	-0.00029222	1.4802	0.00083378	0.96141	0.00054157	563.3048035922144	78.09	0.81648	78.833	78.265	79.082	0.74293					22	15	2	0	0	0	0.6343	1	29652	29652		18.146	1.9972	1	2603800			28919	8396	20665	20831	28324	28324					0.036507447321810105
LDLEKSRHQ	9	Unmodified	_LDLEKSRHQ_					0	0	0		nc|ENSG00000182271|Q6UXZ0-2|TMIGD1;TMIGD1|p.A227*|1|0.6|ENSG00000182271|chr17:30318867-30318876|AACACATGCA/-|frameshift_variant;ENSG00000182271|ENST00000328886|TMIGD1	nc|ENSG00000182271|Q6UXZ0-2|TMIGD1	nc|ENSG00000182271|Q6UXZ0-2|TMIGD1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	563.304187	1124.59382	-0.51876	-0.00029222	1.4802	0.00083378	0.96141	0.00054157	563.3048035922144	78.09	0.81648	78.833	78.265	79.082	0.74293	-0.050902	-0.00016775	NaN	18.146	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2603800			28920	8396	20665	20831							0.036507447321810105
LDLFRYRV	8	Unmodified	_LDLFRYRV_					0	0	0		ENST00000369502.1_1_1:116574029-116574203:+|nuORF;ENSG00000163393|ENST00000369503|SLC22A15	ENST00000369502.1_1_1:116574029-116574203:+|nuORF	ENST00000369502.1_1_1:116574029-116574203:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	361.60980224609375	3	361.209948	1080.60801	-0.32846	-0.00011864	0.055613	2.0088E-05	-0.27285	-9.8556E-05	361.2099124197386	55.832	0.56064	56.582	56.287	56.847	0.75014					24	10	3	0	0	0	0.73111	1	21075	21075		25.399	5.7734	1	7736900			28921	6658	20666	20832	28325	28325					0.07093441951110435
LDLHKIKW	8	Unmodified	_LDLHKIKW_					0	0	0			REV__ENSG00000188993|ENST00000682860|LRRC66	REV__ENSG00000188993|ENST00000682860|LRRC66	MULTI-SECPEP	A375_MHC_IP_R2	2	351.25750732421875	3	351.54656	1051.61785	-0.25422	-8.937E-05	-0.11243	-3.9524E-05	-0.36665	-0.00012889	351.5464664210911	32.19	0.30557	32.927	32.806	33.112	0.73691					12	5	3	0	0	0	0.972	1	11471	11471		3.2813	3.2813	1	2191000	+		28922	22130	20667	20833	28326	28326					0.09410629956505545
LDLHRLNRL	9	Unmodified	_LDLHRLNRL_					0	0	0			REV__ENST00000465230.5_1_2:220470314-220471132:+|nuORF	REV__ENST00000465230.5_1_2:220470314-220471132:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	384.29248046875	3	383.899885	1148.67783	-0.33659	-0.00012922	0.37267	0.00014307	0.036071	1.3848E-05	383.8998650754027	49.225	0.40441	49.982	49.741	50.145	0.75737					11	7	2	0	0	0	0.76106	1	18495	18495		9.544	0	1	1516100	+		28923	19432	20668	20834	28327	28327					0.10943320619730912
LDLIDVYQKC	10	Unmodified	_LDLIDVYQKC_					0	0	0		nc|ENSG00000185480|Q9NWS1-6|PARPBP;nc|ENSG00000185480|Q9NWS1-7|PARPBP;nc|ENSG00000185480|Q9NWS1-2|PARPBP;ENSG00000185480|ENST00000327680|PARPBP;nc|ENSG00000185480|Q9NWS1-4|PARPBP;nc|ENSG00000185480|Q9NWS1-3|PARPBP;ENST00000541668.5_1_12:102514215-102548625:+|nuORF;ENST00000392914.3_1_12:102517666-102545686:+|nuORF	nc|ENSG00000185480|Q9NWS1-6|PARPBP	nc|ENSG00000185480|Q9NWS1-6|PARPBP	MULTI-SECPEP	A375_MHC_IP_R2	2	605.187744140625	2	605.312832	1208.61111	-0.51565	-0.00031213	0.766	0.00046367	0.25035	0.00015154	605.8145155059768	40.433	0.30366	41.208	41.082	41.386	0.77451					9	5	2	0	0	0	0.91442	1	14943	14943		7.609	2.3121	1	1508400			28924	8669	20669	20835	28328	28328					0.015149042229722909
LDLIYTVHYQY	11	Unmodified	_LDLIYTVHYQY_					0	0	0			REV__PIWIL4|p.P132L|1|0.31|ENSG00000134627|chr11:94577374-94577374|C/T|missense_variant	REV__PIWIL4|p.P132L|1|0.31|ENSG00000134627|chr11:94577374-94577374|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	714.3637084960938	2	714.36391	1426.71327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.24	1	90.24	89.74	90.74	0								0	0	0	0.16179	1	33161	33161		9.3831	0	1		+		28925	27784	20670	20836	28329	28329					0.01697893566233688
LDLKEVEPN	9	Unmodified	_LDLKEVEPN_					0	0	0		ENSG00000177689|ENST00000356790|MAGEB10	ENSG00000177689|ENST00000356790|MAGEB10	ENSG00000177689|ENST00000356790|MAGEB10	MULTI-SECPEP	A375_MHC_IP_R2	2	528.648193359375	2	528.782222	1055.54989	-0.45911	-0.00024277	1.1335	0.00059939	0.67441	0.00035662	528.7824582691717	46.145	0.45459	46.911	46.704	47.159	0.76519					8	5	2	0	0	0	0.65246	1	17249	17249		10.824	0.64053	1	1704700			28926	8103	20671	20837	28330	28330					0.024337155151897605
LDLKQKFW	8	Unmodified	_LDLKQKFW_					0	0	0		nc|ENSG00000289755|P50225-2|SULT1A1;ENST00000564148.1_1_16:15490031-15501966:+|nuORF;ENSG00000156968|ENST00000396385|MPV17L	nc|ENSG00000289755|P50225-2|SULT1A1	nc|ENSG00000289755|P50225-2|SULT1A1	MULTI-SECPEP	A375_MHC_IP_R1	1	360.2744140625	3	359.874565	1076.60187	0.06104	2.1967E-05	0.37573	0.00013522	0.43677	0.00015718	359.8745657799805	68.624	0.50716	68.624	68.412	68.92	0					18	9	3	0	0	0	0.972	1	24913	24913		1.4819	0.41044	1	1157600			28927	14952	20672	20838	28331	28331					0.066629237196139
LDLKWICSETS	11	Unmodified	_LDLKWICSETS_					0	0	0		ENST00000439120.1_1_7:26438414-26533664:+|nuORF	ENST00000439120.1_1_7:26438414-26533664:+|nuORF	ENST00000439120.1_1_7:26438414-26533664:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	431.68310546875	3	432.216439	1293.62749	-0.2724	-0.00011774	-2.3877	-0.001032	-2.6601	-0.0011497	432.5506959328317	70.706	0.45444	71.44	71.251	71.706	0.73421					10	8	2	0	0	0	0.99732	1	26833	26833		2.2527	0	1	2036200			28928	11956	20673	20839	28332	28332					-0.007580146109376074
LDLLGALK	8	Unmodified	_LDLLGALK_					0	0	0			REV__nc|ENSG00000196482|P62508-2|ESRRG	REV__nc|ENSG00000196482|P62508-2|ESRRG	MULTI-SECPEP	A375_MHC_IP_R1	1	422.1708679199219	2	421.770929	841.527304	-0.073384	-3.0951E-05	0.54689	0.00023066	0.4735	0.00019971	421.7708548357893	76.75	0.71271	76.75	76.421	77.133	0					20	13	2	0	0	0	0.24561	1	27974	27974		61.357	0	1	2896900	+		28929	22201	20674	20840	28333	28333					0.1002016090824327
LDLLILVTMKH	11	Unmodified	_LDLLILVTMKH_					0	0	0		ENST00000446230.6_1_11:94278904-94308218:+|nuORF	ENST00000446230.6_1_11:94278904-94308218:+|nuORF	ENST00000446230.6_1_11:94278904-94308218:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	433.2853088378906	3	432.596703	1294.76828	-0.051986	-2.2489E-05	1.4376	0.00062188	1.3856	0.00059939	432.59729814317564	140.49	0.35431	140.53	140.4	140.75	0.04216					9	6	2	0	0	0	1.0014	1	55011	55011		0	0	1	564030			28930	12032	20675	20841	28334	28334					0.13268608833141116
LDLNEPEMP	9	Unmodified	_LDLNEPEMP_					0	0	0			REV__nc|ENSG00000113916|P41182-2|BCL6	REV__nc|ENSG00000113916|P41182-2|BCL6	MSMS	A375_MHC_IP_R2	2	529.2181396484375	2	529.247157	1056.47976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.643	1	94.387	93.887	94.887	0.74474								0	0	0	0.1535	1	35598	35598		15.847	2.3393	1		+		28931	17809	20676	20842	28335	28335					-0.04621906144939203
LDLNPQSINKL	11	Unmodified	_LDLNPQSINKL_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	A375_MHC_IP_R2	2	418.6351013183594	3	418.906594	1253.69795	-0.13204	-5.5311E-05	0.31748	0.000133	0.18545	7.7685E-05	418.9066794615377	44.584	0.3543	45.353	45.138	45.492	0.76909					9	5	2	0	0	0	0.72728	1	16686	16686		6.2344	2.3884	1	1576900			28932	2149	20677	20843	28336	28336					0.0812502676906206
LDLPREEA	8	Unmodified	_LDLPREEA_					0	0	0		ENSG00000188263|ENST00000695950|IL17REL	ENSG00000188263|ENST00000695950|IL17REL	ENSG00000188263|ENST00000695950|IL17REL	MULTI-SECPEP	A375_MHC_IP_R2	2	472.14764404296875	2	471.748182	941.481811	-0.31258	-0.00014746	-0.51809	-0.00024441	-0.83067	-0.00039187	471.7479148249175	94.982	0.55807	95.732	95.381	95.939	0.75045					22	10	3	0	0	0	0.972	1	36047	36047		2.0598	0	1	4540500			28933	8895	20678	20844	28337	28337					0.008728906551823457
LDLRIKKLAVL	11	Unmodified	_LDLRIKKLAVL_					0	0	0			REV__ENST00000567351.5_2_17:73997368-73998786:+|nuORF	REV__ENST00000567351.5_2_17:73997368-73998786:+|nuORF	MSMS	A375_MHC_IP_R1	1	641.4927978515625	2	641.434473	1280.85439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.691	1	82.691	82.191	83.191	0								0	0	0	0.16334	1	30244	30244		1.3295	0.92882	1		+		28934	22843	20679	20845	28338	28338					0.2251993673016841
LDLRNIEFMFD	11	Unmodified	_LDLRNIEFMFD_					0	0	0			REV__ENSG00000130477|ENST00000519716|UNC13A	REV__ENSG00000130477|ENST00000519716|UNC13A	MSMS	A375_MHC_IP_R2	2	471.4667053222656	3	471.567472	1411.68059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.166	1	32.903	32.403	33.403	0.73692								0	0	0	0.162	1	11421	11421		8.2864	1.2493	1		+		28935	18541	20680	20846	28339	28339					-0.00878636828292656
LDLRQEEW	8	Unmodified	_LDLRQEEW_					0	0	0			REV__ENST00000435805.6_1_10:43047060-43047381:-|nuORF	REV__ENST00000435805.6_1_10:43047060-43047381:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	363.61328125	3	363.517218	1087.52982	0.072624	2.64E-05	-0.36765	-0.00013365	-0.29502	-0.00010725	363.5170757589048	52.67	0.45838	52.67	52.438	52.897	0					11	6	2	0	0	0	0.972	1	18703	18703		6.2058	0	1	1475200	+		28936	24753	20681	20847	28340	28340					-0.010440354247748473
LDLRQEEW	8	Unmodified	_LDLRQEEW_					0	0	0			REV__ENST00000435805.6_1_10:43047060-43047381:-|nuORF	REV__ENST00000435805.6_1_10:43047060-43047381:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	545.1722412109375	2	544.772188	1087.52982	-0.73363	-0.00039966	-0.797	-0.00043418	-1.5306	-0.00083384	544.7725249955121	63.999	0.40562	64.739	64.496	64.902	0.74022					19	7	4	0	0	0	0.72008	1	24314	24314		28.487	5.3384	1	2464300	+		28937	24753	20681	20847	28341	28341					-0.010440354247748473
LDLRQLETL	9	Unmodified	_LDLRQLETL_					0	0	0		nc|ENSG00000137802|O60336-2|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;nc|ENSG00000137802|O60336-4|MAPKBP1;ENST00000505061.5_1_15:42111671-42117631:+|nuORF	nc|ENSG00000137802|O60336-2|MAPKBP1	nc|ENSG00000137802|O60336-2|MAPKBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	551.2185668945312	2	550.819138	1099.62372	-0.80738	-0.00044472	-0.041635	-2.2933E-05	-0.84901	-0.00046765	550.8191732214725	74.297	0.70985	75.035	74.655	75.365	0.73752					18	13	2	0	0	0	0.11711	1	28209	28209		51.63	0	1	5059200			28938	4914	20682	20848	28342	28342					0.07789683677515313
LDLRRRLRRR	10	Unmodified	_LDLRRRLRRR_					0	0	0			REV__ENSG00000135144|ENST00000548759|DTX1	REV__ENSG00000135144|ENST00000548759|DTX1	MSMS	A375_MHC_IP_R1	1	705.7561645507812	2	705.455459	1408.89637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.627	1	73.627	73.127	74.127	0								0	0	0	0.15628	1	26812	26812		0.45834	0.057624	1		+		28939	18827	20683	20849	28343	28343					0.2082734998189153
LDLRRRLRRR	10	Unmodified	_LDLRRRLRRR_					0	0	0			REV__ENSG00000135144|ENST00000548759|DTX1	REV__ENSG00000135144|ENST00000548759|DTX1	MSMS	A375_MHC_IP_R1	1	705.812744140625	2	705.455459	1408.89637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.561	1	81.561	81.061	82.061	0								0	0	0	0.15591	1	29807	29807		1.6526	0.32309	1		+		28940	18827	20683	20849	28344	28344					0.2082734998189153
LDLRRRLRVRR	11	Unmodified	_LDLRRRLRVRR_					0	0	0		ENST00000309993.2_1_3:135913869-135914463:-|nuORF	ENST00000309993.2_1_3:135913869-135914463:-|nuORF	ENST00000309993.2_1_3:135913869-135914463:-|nuORF	MSMS	A375_MHC_IP_R1	1	754.9895629882812	2	754.989666	1507.96478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.526	1	22.526	22.026	23.026	0								0	0	0	0.1636	1	6057	6057		0	0	1				28941	10617	20684	20850	28345	28345					0.23111594561737547
LDLRRRVRRQR	11	Unmodified	_LDLRRRVRRQR_					0	0	0			REV__nc|ENSG00000110042|Q9Y2E6-2|DTX4	REV__nc|ENSG00000110042|Q9Y2E6-2|DTX4	MSMS	A375_MHC_IP_R1	1	762.4769287109375	2	762.476923	1522.93929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.196	1	91.196	90.696	91.696	0								0	0	0	0.16353	1	33510	33510		0.35063	0.35063	1		+		28942	17608	20685	20851	28346	28346					0.19874120039321497
LDLRSINVP	9	Unmodified	_LDLRSINVP_					0	0	0		USH1G|p.S430N|1|0.39|ENSG00000182040|chr17:74919547-74919547|C/T|missense_variant	USH1G|p.S430N|1|0.39|ENSG00000182040|chr17:74919547-74919547|C/T|missense_variant	USH1G|p.S430N|1|0.39|ENSG00000182040|chr17:74919547-74919547|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	514.0081787109375	2	513.800749	1025.58694	-0.55038	-0.00028278	-0.97125	-0.00049903	-1.5216	-0.00078181	514.3014197345829	53.351	0.55768	53.351	53.099	53.656	0					13	10	2	0	0	0	0.63327	1	18963	18963		18.146	4.2403	1	1590400			28943	30121	20686	20852	28347	28347					0.07517431851601941
LDLRSINVP	9	Unmodified	_LDLRSINVP_					0	0	0		USH1G|p.S430N|1|0.39|ENSG00000182040|chr17:74919547-74919547|C/T|missense_variant	USH1G|p.S430N|1|0.39|ENSG00000182040|chr17:74919547-74919547|C/T|missense_variant	USH1G|p.S430N|1|0.39|ENSG00000182040|chr17:74919547-74919547|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	514.2006225585938	2	513.800749	1025.58694	-0.99145	-0.00050941	1.8135	0.00093176	0.82201	0.00042235	513.8018494148612	35.444	0.55698	36.208	35.98	36.537	0.76338					12	10	2	0	0	0	0.75466	1	12888	12888		0.45834	0	1	1827100			28944	30121	20686	20852	28348	28348					0.07517431851601941
LDLRSINVP	9	Unmodified	_LDLRSINVP_					0	0	0		USH1G|p.S430N|1|0.39|ENSG00000182040|chr17:74919547-74919547|C/T|missense_variant	USH1G|p.S430N|1|0.39|ENSG00000182040|chr17:74919547-74919547|C/T|missense_variant	USH1G|p.S430N|1|0.39|ENSG00000182040|chr17:74919547-74919547|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	513.800749	1025.58694	-0.71715	-0.00036847	1.3218	0.00067913	0.60462	0.00031065	513.8013652225301	36.463	0.25345	36.463	36.287	36.541	0	0.12794	-6.181E-05	NaN	0.45834	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1496900			28945	30121	20686	20852							0.07517431851601941
LDLRTWHM	8	Unmodified	_LDLRTWHM_					0	0	0			REV__ENSG00000196663|ENST00000359520|TECPR2	REV__ENSG00000196663|ENST00000359520|TECPR2	MULTI-SECPEP	A375_MHC_IP_R1	1	357.6145324707031	3	357.851655	1070.53313	0.014489	5.1848E-06	-0.056501	-2.0219E-05	-0.042013	-1.5034E-05	357.8516114180022	61.201	0.45935	61.201	60.922	61.382	0					11	8	2	0	0	0	0.972	1	21983	21983		0.30703	0.30703	1	1877300	+		28946	22219	20687	20853	28349	28349					0.0006893614825003169
LDLSEDAFGE	10	Unmodified	_LDLSEDAFGE_					0	0	0			REV__nc|ENSG00000165271|Q9H6R4-2|NOL6	REV__nc|ENSG00000165271|Q9H6R4-2|NOL6	MULTI-SECPEP	A375_MHC_IP_R1	1	366.4359436035156	3	365.832871	1094.47678	0.17771	6.5012E-05	1.146	0.00041924	1.3237	0.00048426	366.1677045115862	24.801	0.25493	24.801	24.698	24.953	0					6	4	2	0	0	0	0.92957	1	7150	7150		3.3196	0	1	1229100	+		28947	20569	20688	20854	28350	28350					-0.0666745799810542
LDLSHNSVSEI	11	Unmodified	_LDLSHNSVSEI_					0	0	0		ENSG00000010322|ENST00000345716|NISCH;nc|ENSG00000010322|Q9Y2I1-4|NISCH;nc|ENSG00000010322|Q9Y2I1-3|NISCH	ENSG00000010322|ENST00000345716|NISCH	ENSG00000010322|ENST00000345716|NISCH	MULTI-SECPEP	A375_MHC_IP_R2	2	606.6827392578125	2	607.306592	1212.59863	-0.3687	-0.00022391	-2.2487	-0.0013656	-2.6174	-0.0015896	607.3051468944105	103.71	0.20163	104.47	104.35	104.55	0.76428					5	3	2	0	0	0	0.98748	1	39246	39246		5.2969	1.7004	1	1077300			28948	980	20689	20855	28351	28351					0.0008358408429103292
LDLVVLEVGI	10	Unmodified	_LDLVVLEVGI_					0	0	0			REV__ENSG00000149428|ENST00000617285|HYOU1	REV__ENSG00000149428|ENST00000617285|HYOU1	MULTI-SECPEP	A375_MHC_IP_R2	2	534.6891479492188	2	535.328808	1068.64306	-1.1464	-0.00061369	0.086367	4.6235E-05	-1.06	-0.00056746	535.328696548547	61.616	0.50292	62.361	62.02	62.523	0.74503					15	9	2	0	0	0	0.92957	1	23309	23309		6.2058	1.8765	1	812210	+		28949	19679	20690	20856	28352	28352					0.11148639968428142
LDLWKLADF	9	Unmodified	_LDLWKLADF_					0	0	0			REV__tr|U7T2A0|U7T2A0_FUSNUGlutamate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gltXPE=3SV=1	REV__tr|U7T2A0|U7T2A0_FUSNUGlutamate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gltXPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	374.4335021972656	3	374.206092	1119.59645	0.34498	0.00012909	1.7816	0.00066669	2.1266	0.00079579	374.2055808648274	42.057	0.30267	42.057	41.982	42.285	0					8	5	2	0	0	0	0.76187	1	14593	14593		2.2828	0	1	648670	+		28950	28729	20691	20857	28353	28353					0.04143200137127678
LDLYLMHW	8	Unmodified	_LDLYLMHW_					0	0	0		ENST00000496999.5_1_1:46016755-46032693:+|nuORF;ENST00000497973.5_1_1:46032543-46034819:+|nuORF;ENSG00000117448|ENST00000351829|AKR1A1	ENST00000496999.5_1_1:46016755-46032693:+|nuORF	ENST00000496999.5_1_1:46016755-46032693:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	546.2469482421875	2	545.773145	1089.53174	-0.73449	-0.00040086	0.042591	2.3245E-05	-0.6919	-0.00037762	545.7754770203721	63.706	0.40687	64.447	64.241	64.648	0.74022					10	7	2	0	0	0	0.75805	1	24218	24218		18.135	2.2878	1	1575200			28951	3485	20692	20858	28354	28354					-0.009446979405083766
LDLYNDSAYY	10	Unmodified	_LDLYNDSAYY_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	618.4288940429688	2	618.774593	1235.53463	-0.28292	-0.00017507	-0.61038	-0.00037769	-0.8933	-0.00055275	619.2749862757975	88.396	0.6606	88.396	88.154	88.815	0					15	12	2	0	0	0	0.92957	1	32397	32397		10.074	0	1	2945900			28952	1269	20693	20859	28355	28355					-0.07371196072654129
LDLYRIGCM	9	Unmodified	_LDLYRIGCM_					0	0	0		ENST00000523675.1_1_8:141900602-141931054:-|nuORF	ENST00000523675.1_1_8:141900602-141931054:-|nuORF	ENST00000523675.1_1_8:141900602-141931054:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	542.6951293945312	2	542.269912	1082.52527	-0.59893	-0.00032478	1.0361	0.00056186	0.4372	0.00023708	542.2709123547793	60.236	0.5085	60.236	60.006	60.514	0					12	9	2	0	0	0	0.63327	1	21782	21782		18.146	10.857	1	1245800			28953	13046	20694	20860	28356	28356					-0.01268959163553518
LDMCGCPP	8	Unmodified	_LDMCGCPP_					0	0	0		ENST00000484320.6_1_1:155979333-155988008:-|nuORF	ENST00000484320.6_1_1:155979333-155988008:-|nuORF	ENST00000484320.6_1_1:155979333-155988008:-|nuORF	MSMS	A375_MHC_IP_R1	1	418.1579284667969	2	418.160985	834.307417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.603	1	52.603	52.103	53.103	0								0	0	0	0.16876	1	18716	18716		2.5775	0.27475	1				28954	12562	20695	20861	28357	28357					-0.11636472357645289
LDMDEPDN	8	Unmodified	_LDMDEPDN_					0	0	0			REV__nc|ENSG00000107290|Q7Z333-3|SETX	REV__nc|ENSG00000107290|Q7Z333-3|SETX	MSMS	A375_MHC_IP_R1	1	474.6689453125	2	474.68439	947.354227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.9	1	62.9	62.4	63.4	0								0	0	0	0.16876	1	22725	22725		12.532	6.1774	1		+		28955	17479	20696	20862	28358	28358					-0.12155618001156654
LDMDEPDN	8	Unmodified	_LDMDEPDN_					0	0	0			REV__nc|ENSG00000107290|Q7Z333-3|SETX	REV__nc|ENSG00000107290|Q7Z333-3|SETX	MSMS	A375_MHC_IP_R2	2	474.66876220703125	2	474.68439	947.354227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.044	1	62.787	62.287	63.287	0.74263								0	0	0	0.16876	1	23517	23517		12.532	6.1774	1		+		28956	17479	20696	20862	28359	28359					-0.12155618001156654
LDMGFKSCLD	10	Unmodified	_LDMGFKSCLD_					0	0	0			REV__ENSG00000086504|ENST00000199706|MRPL28	REV__ENSG00000086504|ENST00000199706|MRPL28	MSMS	A375_MHC_IP_R2	2	564.654052734375	2	564.756835	1127.49912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.799	1	73.535	73.035	74.035	0.73541								0	0	0	0.15265	1	27632	27632		12.241	0.74595	1		+		28957	16855	20697	20863	28360	28360					-0.059532731256695115
LDMGYDKLK	9	Unmodified	_LDMGYDKLK_					0	0	0			REV__nc|ENSG00000241350|Q13670|PMS2P11	REV__nc|ENSG00000241350|Q13670|PMS2P11	MULTI-SECPEP	A375_MHC_IP_R2	2	362.3007507324219	3	361.523204	1081.54778	-0.61177	-0.00022117	-0.15214	-5.5004E-05	-0.76392	-0.00027617	361.5230526687438	26.042	0.50723	26.702	26.551	27.058	0.65992					15	9	2	0	0	0	0.71541	1	8860	8860		7.609	0	1	1624800	+		28958	27519	20698	20864	28361	28361					0.010269635057284177
LDMHEQLVK	9	Unmodified	_LDMHEQLVK_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1;REV__nc|ENSG00000131018|Q8NF91-7|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	A375_MHC_IP_R1	1	556.6884765625	2	556.792066	1111.56958	-0.5696	-0.00031715	-1.3227	-0.00073648	-1.8923	-0.0010536	556.7911292090326	87.576	0.86628	87.576	87.237	88.103	0					31	16	3	0	0	0	0.66474	1	32277	32277		6.2058	0.47393	1	2232300	+		28959	18581;27223	20699	20865	28362	28362					0.018257682542980547
LDMHKKMFR	9	Unmodified	_LDMHKKMFR_					0	0	0		nc|ENSG00000139977|Q147X3-2|NAA30;ENSG00000139977|ENST00000556492|NAA30	nc|ENSG00000139977|Q147X3-2|NAA30	nc|ENSG00000139977|Q147X3-2|NAA30	MULTI-SECPEP	A375_MHC_IP_R1	1	402.9402160644531	3	402.547578	1204.6209	-0.56317	-0.0002267	0.64927	0.00026136	0.086097	3.4658E-05	402.5480216645633	27.002	0.55219	27.002	26.728	27.28	0					14	10	2	0	0	0	0.7911	1	8160	8160		4.5289	3.4574	1	3294600			28960	5120	20700	20866	28363	28363					0.026778137473684183
LDMISRKL	8	Unmodified	_LDMISRKL_					0	0	0		FSIP2|p.T6548Lfs*12|1|0.3|ENSG00000188738|chr2:185808944-185808944|A/-|frameshift_variant;nc|ENSG00000188738|Q5CZC0-2|FSIP2;FSIP2|p.N5425Kfs*23|1|0.39|ENSG00000188738|chr2:185805576-185805577|-/A|frameshift_variant;FSIP2|p.P6584Ifs*9|1|0.07|ENSG00000188738|chr2:185809054-185809055|-/TATTTTGACTGGTTTTTTTCCA|frameshift_variant;ENSG00000188738|ENST00000424728|FSIP2	FSIP2|p.T6548Lfs*12|1|0.3|ENSG00000188738|chr2:185808944-185808944|A/-|frameshift_variant	FSIP2|p.T6548Lfs*12|1|0.3|ENSG00000188738|chr2:185808944-185808944|A/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	488.1903381347656	2	488.28642	974.558287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.48	1	110.48	109.98	110.98	0								0	0	0	0.16876	1	40509	40509		12.532	0	1				28961	14025	20701	20867	28364	28364					0.06998990950819461
LDMKIKSSFT	10	Unmodified	_LDMKIKSSFT_					0	0	0		ENST00000469761.1_1_6:28185900-28186131:-|nuORF	ENST00000469761.1_1_6:28185900-28186131:-|nuORF	ENST00000469761.1_1_6:28185900-28186131:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	390.91693115234375	3	390.546008	1168.6162	-0.21227	-8.2902E-05	1.3541	0.00052885	1.1419	0.00044595	390.54654575119457	32.511	0.40699	33.248	33.01	33.417	0.73692					11	7	2	0	0	0	0.69875	1	11651	11651		12.856	1.957	1	2838800			28962	12327	20702	20868	28365	28365					0.03863208085590486
LDMLLEPDD	9	Unmodified	_LDMLLEPDD_					0	0	0			REV__nc|ENSG00000169247|Q8TF17-5|SH3TC2	REV__nc|ENSG00000169247|Q8TF17-5|SH3TC2	MULTI-MSMS	A375_MHC_IP_R1	1	531.20556640625	2	530.74699	1059.47943	-0.36374	-0.00019305	-0.59979	-0.00031834	-0.96353	-0.00051139	530.7465979081912	92.455	0.71037	92.455	92.16	92.871	0					32	13	3	0	0	0	0.65721	1	33898	33898		10.824	10.824	1	2729300	+		28963	20921	20703	20869	28366	28366					-0.04793325864784492
LDMLLEPDD	9	Unmodified	_LDMLLEPDD_					0	0	0			REV__nc|ENSG00000169247|Q8TF17-5|SH3TC2	REV__nc|ENSG00000169247|Q8TF17-5|SH3TC2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	530.74699	1059.47943	-0.5394	-0.00028628	-0.65781	-0.00034913	-1.1972	-0.00063541	530.7465010563931	91.865	1.0138	92.6	91.868	92.882	0.73451	0.072525	-4.158E-05	NaN	10.824	32	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2531900	+		28964	20921	20703	20869							-0.04793325864784492
LDMMMGGF	8	Unmodified	_LDMMMGGF_					0	0	0		tr|U7SN93|U7SN93_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01861PE=3SV=1	tr|U7SN93|U7SN93_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01861PE=3SV=1	tr|U7SN93|U7SN93_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01861PE=3SV=1	MSMS	A375_MHC_IP_R2	2	451.1041259765625	2	451.18446	900.354367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.34	1	140.38	139.88	140.88	0.04216								0	0	0	0.16876	1	54941	54941		2.8892	0.31174	1				28965	29545	20704	20870	28367	28367					-0.09979612806489513
LDMQDYFH	8	Unmodified	_LDMQDYFH_					0	0	0			REV__nc|ENSG00000179583|P33076-2|CIITA	REV__nc|ENSG00000179583|P33076-2|CIITA	MULTI-SECPEP	A375_MHC_IP_R2	2	1068.9342041015625	1	1068.44551	1067.43823	0.2766	0.00029553	-3.6084	-0.0038554	-3.3318	-0.0035599	1068.441879620019	114.38	0.45309	115.09	114.68	115.14	0.70985					10	8	2	0	0	0	0.972	1	43134	43134		7.9102	1.5561	1	8072000	+		28966	21570	20705	20871	28368	28368					-0.09279042113598734
LDMQDYFH	8	Unmodified	_LDMQDYFH_					0	0	0			REV__nc|ENSG00000179583|P33076-2|CIITA	REV__nc|ENSG00000179583|P33076-2|CIITA	MULTI-MATCH	A375_MHC_IP_R1	1		1	1068.44551	1067.43823	0.54673	0.00058415	-2.6447	-0.0028257	-2.0979	-0.0022415	1068.4432487620447	115.01	0.55735	115.01	114.92	115.48	0	-0.039201	0.00029627	NaN	7.9102	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5185200	+		28967	21570	20705	20871							-0.09279042113598734
LDMSDQKYL	9	Unmodified	_LDMSDQKYL_					0	0	0			REV__ENSG00000131459|ENST00000253778|GFPT2	REV__ENSG00000131459|ENST00000253778|GFPT2	MULTI-SECPEP	A375_MHC_IP_R2	2	556.1423950195312	2	556.768257	1111.52196	-0.67847	-0.00037775	-2.7181	-0.0015133	-3.3965	-0.0018911	556.7676197336325	101.58	0.55694	102.34	101.91	102.46	0.76428					12	10	2	0	0	0	0.62767	1	38502	38502		11.64	4.3511	1	787600	+		28968	18605	20706	20872	28369	28369					-0.02933930736548973
LDMTSCSFID	10	Unmodified	_LDMTSCSFID_					0	0	0		STKLD1|p.M233I|1|0.49|ENSG00000198870|chr9:133394406-133394406|G/A|missense_variant	STKLD1|p.M233I|1|0.49|ENSG00000198870|chr9:133394406-133394406|G/A|missense_variant	STKLD1|p.M233I|1|0.49|ENSG00000198870|chr9:133394406-133394406|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	566.1971435546875	2	566.238475	1130.4624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.732	1	73.467	72.967	73.967	0.73541								0	0	0	0.15207	1	27605	27605		13.906	2.2658	1				28969	29265	20707	20873	28370	28370					-0.09761569742227039
LDNFALVALL	10	Unmodified	_LDNFALVALL_					0	0	0		ZNF324|p.S39L|1|0.25|ENSG00000083812|chr19:58469301-58469301|C/T|missense_variant	ZNF324|p.S39L|1|0.25|ENSG00000083812|chr19:58469301-58469301|C/T|missense_variant	ZNF324|p.S39L|1|0.25|ENSG00000083812|chr19:58469301-58469301|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	545.024169921875	2	544.82115	1087.62775	-0.7381	-0.00040213	-3.2993	-0.0017975	-4.0374	-0.0021997	544.8188515479312	42.674	0.35507	43.446	43.268	43.623	0.7724					11	6	2	0	0	0	0.88918	1	15866	15866		8.7454	2.0222	1	1825100			28970	30212	20708	20874	28371	28371					0.08743773171249813
LDNITTDKIL	10	Unmodified	_LDNITTDKIL_					0	0	0		ENSG00000274391|ENST00000618007|TPTE;nc|ENSG00000274391|P56180-4|TPTE;nc|ENSG00000274391|P56180-3|TPTE;nc|ENSG00000274391|P56180-2|TPTE	ENSG00000274391|ENST00000618007|TPTE	ENSG00000274391|ENST00000618007|TPTE	MULTI-SECPEP	A375_MHC_IP_R2	2	573.7255859375	2	573.324254	1144.63395	-0.1536	-8.8061E-05	1.9009	0.0010898	1.7473	0.0010018	573.3251712709218	101.47	0.81474	102.24	101.85	102.67	0.76428					28	15	3	0	0	0	0.63381	1	38446	38446		31.268	0	1	6383700			28971	10002	20709	20875	28372	28372					0.0674224661208882
LDNIYWDNS	9	Unmodified	_LDNIYWDNS_					0	0	0		tr|U7SZF5|U7SZF5_FUSNUDNAtopologymodulationproteinFlaROS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00732PE=4SV=1	tr|U7SZF5|U7SZF5_FUSNUDNAtopologymodulationproteinFlaROS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00732PE=4SV=1	tr|U7SZF5|U7SZF5_FUSNUDNAtopologymodulationproteinFlaROS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00732PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	570.6527099609375	2	570.253828	1138.4931	-0.26175	-0.00014926	-0.71858	-0.00040977	-0.98033	-0.00055904	570.2534079450508	104.21	0.66249	104.98	104.65	105.31	0.76308					20	12	2	0	0	0	0.4867	1	39464	39464		20.454	1.1966	1	1824200			28972	29859	20710	20876	28373	28373					-0.07060332041328365
LDNIYWDNS	9	Unmodified	_LDNIYWDNS_					0	0	0		tr|U7SZF5|U7SZF5_FUSNUDNAtopologymodulationproteinFlaROS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00732PE=4SV=1	tr|U7SZF5|U7SZF5_FUSNUDNAtopologymodulationproteinFlaROS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00732PE=4SV=1	tr|U7SZF5|U7SZF5_FUSNUDNAtopologymodulationproteinFlaROS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00732PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	570.253828	1138.4931	-0.22674	-0.0001293	-0.14395	-8.2086E-05	-0.37068	-0.00021138	570.2537084334298	105	0.6075	105	104.59	105.2	0	0.0096193	0.00025214	NaN	20.454	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1240300			28973	29859	20710	20876							-0.07060332041328365
LDNIYWDNS	9	Unmodified	_LDNIYWDNS_					0	0	0		tr|U7SZF5|U7SZF5_FUSNUDNAtopologymodulationproteinFlaROS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00732PE=4SV=1	tr|U7SZF5|U7SZF5_FUSNUDNAtopologymodulationproteinFlaROS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00732PE=4SV=1	tr|U7SZF5|U7SZF5_FUSNUDNAtopologymodulationproteinFlaROS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00732PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	570.253828	1138.4931	-0.26175	-0.00014926	-0.71858	-0.00040977	-0.98033	-0.00055904	570.2534079450508	104.21	0.66249	104.98	104.65	105.31	0.76308	-0.0096193	-0.00040323	NaN	20.454	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1824200			28974	29859	20710	20876							-0.07060332041328365
LDNNAECSY	9	Unmodified	_LDNNAECSY_					0	0	0			REV__FCRL2|p.G373D|1|0.27|ENSG00000132704|chr1:157767275-157767275|C/T|missense_variant	REV__FCRL2|p.G373D|1|0.27|ENSG00000132704|chr1:157767275-157767275|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	515.1021728515625	2	514.703114	1027.39167	-0.4498	-0.00023152	-0.52469	-0.00027006	-0.97449	-0.00050157	514.7026421242718	55.764	0.40671	55.764	55.584	55.991	0					11	7	2	0	0	0	0.75466	1	19991	19991		7.9102	0	1	1904700	+		28975	26627	20711	20877	28374	28374					-0.12092526735546016
LDNNAECSY	9	Unmodified	_LDNNAECSY_					0	0	0			REV__FCRL2|p.G373D|1|0.27|ENSG00000132704|chr1:157767275-157767275|C/T|missense_variant	REV__FCRL2|p.G373D|1|0.27|ENSG00000132704|chr1:157767275-157767275|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	514.9246215820312	2	514.703114	1027.39167	-0.88106	-0.00045349	-1.6048	-0.000826	-2.4859	-0.0012795	514.7029174475464	55.219	0.5085	55.97	55.626	56.135	0.75075					12	9	2	0	0	0	0.75466	1	20902	20902		12.532	0	1	1304000	+		28976	26627	20711	20877	28375	28375					-0.12092526735546016
LDNNDNAPV	9	Unmodified	_LDNNDNAPV_					0	0	0		nc|ENSG00000204963|Q9UN72-2|PCDHA7;ENSG00000204963|ENST00000525929|PCDHA7;nc|ENSG00000204961|Q9Y5H5-2|PCDHA9;ENSG00000204961|ENST00000532602|PCDHA9	nc|ENSG00000204963|Q9UN72-2|PCDHA7	nc|ENSG00000204963|Q9UN72-2|PCDHA7	MULTI-MSMS	A375_MHC_IP_R1	1	486.62451171875	2	486.225071	970.435589	-0.29525	-0.00014356	-0.8202	-0.0003988	-1.1154	-0.00054236	486.2246550176369	87.503	0.71254	87.503	87.186	87.898	0					34	13	4	0	0	0	0.58047	1	32068	32068		15.847	2.3393	1	7205000			28977	9489	20712	20878	28376	28376					-0.050811742469136334
LDNNDNAPV	9	Unmodified	_LDNNDNAPV_					0	0	0		nc|ENSG00000204963|Q9UN72-2|PCDHA7;ENSG00000204963|ENST00000525929|PCDHA7;nc|ENSG00000204961|Q9Y5H5-2|PCDHA9;ENSG00000204961|ENST00000532602|PCDHA9	nc|ENSG00000204963|Q9UN72-2|PCDHA7	nc|ENSG00000204963|Q9UN72-2|PCDHA7	MULTI-MSMS	A375_MHC_IP_R2	2	486.6246337890625	2	486.225071	970.435589	-0.47176	-0.00022938	-0.21823	-0.00010611	-0.68999	-0.00033549	486.2249227625776	86.699	0.60863	87.432	87.203	87.812	0.733					29	11	3	0	0	0	0.65721	1	32958	32958		10.824	10.824	1	6648100			28978	9489	20712	20878	28377	28377					-0.050811742469136334
LDNNTWYY	8	Unmodified	_LDNNTWYY_					0	0	0			REV__ENSG00000114841|ENST00000420323|DNAH1	REV__ENSG00000114841|ENST00000420323|DNAH1	MSMS	A375_MHC_IP_R2	2	544.68798828125	2	544.737814	1087.46108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.447	1	74.182	73.682	74.682	0.73541								0	0	0	0.16876	1	27877	27877		13.508	0.97634	1		+		28979	17843	20713	20879	28378	28378					-0.07915699724480874
LDNPIDEW	8	Unmodified	_LDNPIDEW_					0	0	0			REV__ENST00000432045.6_1_7:130565395-130565941:-|nuORF	REV__ENST00000432045.6_1_7:130565395-130565941:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	501.1779479980469	2	501.232364	1000.45018	-0.44179	-0.00022144	-0.5479	-0.00027462	-0.98968	-0.00049606	501.23204895932474	85.494	0.55985	86.23	85.831	86.391	0.73601					16	10	3	0	0	0	0.77488	1	32520	32520		13.508	0.97634	1	1258200	+		28980	24707	20714	20880	28379	28379					-0.05003102098760337
LDNQSQPRDP	10	Unmodified	_LDNQSQPRDP_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MSMS	A375_MHC_IP_R2	2	585.1895751953125	2	585.280909	1168.54726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.678	1	58.427	57.927	58.927	0.74894								0	0	0	0.13403	1	21812	21812		32.786	2.1491	1				28981	8133	20715	20881	28380	28380					-0.030267398897422026
LDNQSVDIR	9	Unmodified	_LDNQSVDIR_					0	0	0			REV__ENSG00000153066|ENST00000283033|TXNDC11	REV__ENSG00000153066|ENST00000283033|TXNDC11	MULTI-SECPEP	A375_MHC_IP_R1	1	353.9366760253906	3	353.852489	1058.53564	0.068899	2.438E-05	3.339	0.0011815	3.4079	0.0012059	353.8535745545558	37.555	0.20474	37.555	37.454	37.658	0					5	3	2	0	0	0	0.49205	1	12641	12641		11.518	0	1	771080	+		28982	19825	20716	20882	28381	28381					0.008710630869018132
LDNRKWLALRD	11	Unmodified	_LDNRKWLALRD_					0	0	0			REV__ENST00000512594.5_1_4:7968719-8022199:-|nuORF	REV__ENST00000512594.5_1_4:7968719-8022199:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	700.7924194335938	2	700.393867	1398.77318	-0.66631	-0.00046668	-1.5192	-0.001064	-2.1855	-0.0015307	700.3927980384034	81.206	0.50703	81.206	80.948	81.455	0					22	9	3	0	0	0	0.99238	1	29647	29647		10.151	1.995	1	6384700	+		28983	20436	20717	20883	28382	28382					0.08974629020121938
LDNSSRKQPWF	11	Unmodified	_LDNSSRKQPWF_					0	0	0		SPHKAP|p.G954R|1|0.38|ENSG00000153820|chr2:228017994-228017994|C/T|missense_variant	SPHKAP|p.G954R|1|0.38|ENSG00000153820|chr2:228017994-228017994|C/T|missense_variant	SPHKAP|p.G954R|1|0.38|ENSG00000153820|chr2:228017994-228017994|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	689.1318359375	2	689.349126	1376.6837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.838	1	72.572	72.072	73.072	0.73421								0	0	0	0.16249	1	27258	27258		5.7319	0	1				28984	29234	20718	20884	28383	28383					0.010423743407500297
LDNVLLDHE	9	Unmodified	_LDNVLLDHE_					0	0	0		nc|ENSG00000027075|P24723-2|PRKCH;ENSG00000027075|ENST00000332981|PRKCH	nc|ENSG00000027075|P24723-2|PRKCH	nc|ENSG00000027075|P24723-2|PRKCH	MULTI-SECPEP	A375_MHC_IP_R2	2	356.3319396972656	3	356.517106	1066.52949	-0.54056	-0.00019272	-3.1165	-0.0011111	-3.6571	-0.0013038	356.5161771409032	23.202	0.20366	23.832	23.675	23.878	0.63014					5	3	2	0	0	0	0.76827	1	7373	7373		4.1895	0	1	587490			28985	1098	20719	20885	28384	28384					-0.0011145514461077255
LDNVTLQLFLT	11	Unmodified	_LDNVTLQLFLT_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-SECPEP	A375_MHC_IP_R1	1	425.9556579589844	3	426.243094	1275.70745	-0.19332	-8.2401E-05	-2.7145	-0.001157	-2.9078	-0.0012394	426.9087502075935	68.636	0.4065	68.636	68.412	68.819	0					23	7	4	0	0	0	0.99482	1	24903	24903		3.8459	0	1	1131000	+		28986	27255	20720	20886	28385	28385					0.08062795054570415
LDPAQRGV	8	Unmodified	_LDPAQRGV_					0	0	0		nc|ENSG00000130731|Q96S19-3|METTL26;nc|ENSG00000130731|Q96S19-5|METTL26;nc|ENSG00000130731|Q96S19-2|METTL26;ENST00000448973.6_1_16:685849-686290:-|nuORF;nc|ENSG00000130731|Q96S19-6|METTL26;ENSG00000130731|ENST00000301686|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26	nc|ENSG00000130731|Q96S19-3|METTL26	nc|ENSG00000130731|Q96S19-3|METTL26	MSMS	A375_MHC_IP_R2	2	428.269287109375	2	428.237784	854.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.178	1	24.821	24.321	25.321	0.64368								0	0	0	0.16876	1	7900	7900		15.847	0	1				28987	4273	20721	20887	28386	28386					0.027963450661900424
LDPAQRLLY	9	Unmodified	_LDPAQRLLY_					0	0	0		ENSG00000198185|ENST00000692313|ZNF334	ENSG00000198185|ENST00000692313|ZNF334	ENSG00000198185|ENST00000692313|ZNF334	MULTI-SECPEP	A375_MHC_IP_R2	2	545.2083740234375	2	544.808574	1087.60259	-1.0559	-0.00057527	0.30871	0.00016819	-0.74721	-0.00040708	544.8086985496496	71.438	0.70951	72.172	71.756	72.465	0.73421					35	13	3	0	0	0	0.46045	1	27068	27068		22.736	0	1	7415100			28988	9239	20722	20888	28387	28387					0.062297183686723656
LDPARLSP	8	Unmodified	_LDPARLSP_					0	0	0		ENSG00000187690|ENST00000342995|EZHIP	ENSG00000187690|ENST00000342995|EZHIP	ENSG00000187690|ENST00000342995|EZHIP	MULTI-SECPEP	A375_MHC_IP_R1	1	435.1479187011719	2	434.747985	867.481417	-0.49337	-0.00021449	0.44366	0.00019288	-0.049712	-2.1612E-05	434.7481936953721	26.191	0.50738	26.191	26.068	26.575	0					14	9	3	0	0	0	0.93777	1	7812	7812		17.113	0	1	3170600			28989	8850	20723	20889	28388	28388					0.0423751572599258
LDPDGCSPCNC	11	Unmodified	_LDPDGCSPCNC_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;USH2A|p.V2904Tfs*33|1|0.04|ENSG00000042781|chr1:215867142-215867143|CG/-|frameshift_variant;nc|ENSG00000042781|O75445-2|USH2A;USH2A|p.D798Ifs*8|1|0.1|ENSG00000042781|chr1:216246992-216247002|CCAGCTGTGTC/-|frameshift_variant	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MSMS	A375_MHC_IP_R2	2	562.1613159179688	2	562.196284	1122.37802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.35	1	85.086	84.586	85.586	0.73664								0	0	0	0.16302	1	32063	32063		2.9952	0.10602	1				28990	1177	20724	20890	28389	28389					-0.17827843830650636
LDPESASFQ	9	Unmodified	_LDPESASFQ_					0	0	0		nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;ENSG00000143493|ENST00000366994|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7;ENST00000461212.5_1_1:212125793-212148678:-|nuORF	nc|ENSG00000143493|Q9NVH2-4|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	MULTI-MSMS	A375_MHC_IP_R2	2	497.64990234375	2	497.229822	992.445091	-0.65482	-0.0003256	0.26029	0.00012942	-0.39454	-0.00019618	497.22987654534415	65.628	0.76231	66.366	65.917	66.68	0.73811					35	14	3	0	0	0	0.35581	1	24806	24806		26.884	8.7373	1	3488300			28991	5400	20725	20891	28390	28390					-0.051434059613711725
LDPFETCGLI	10	Unmodified	_LDPFETCGLI_					0	0	0		UGT1A10|p.D151E|1|0.16|ENSG00000242515|chr2:233636975-233636975|T/A|missense_variant	UGT1A10|p.D151E|1|0.16|ENSG00000242515|chr2:233636975-233636975|T/A|missense_variant	UGT1A10|p.D151E|1|0.16|ENSG00000242515|chr2:233636975-233636975|T/A|missense_variant	MSMS	A375_MHC_IP_R2	2	554.2028198242188	2	554.273175	1106.5318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.565	1	100.33	99.828	100.83	0.76278								0	0	0	0.15105	1	37767	37767		15.847	5.0233	1				28992	30112	20726	20892	28391	28391					-0.0172074273114049
LDPGQTLIY	9	Unmodified	_LDPGQTLIY_					0	0	0		ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	ENSG00000119888|ENST00000263735|EPCAM	MULTI-MSMS	A375_MHC_IP_R2	2	510.6732482910156	2	510.274032	1018.53351	-0.68848	-0.00035131	-0.22992	-0.00011732	-0.91839	-0.00046863	510.27395523699056	104.72	3.8699	105.49	105.05	108.92	0.76308					241	75	6	0	0	0	0.10411	1	40331	40331		49.933	1.5872	1	973940000			28993	3629	20727	20893	28392	28392					0.024986343491036678
LDPHWLDKQRG	11	Unmodified	_LDPHWLDKQRG_					0	0	0			REV__ENST00000405334.5_1_2:37362654-37364159:-|nuORF	REV__ENST00000405334.5_1_2:37362654-37364159:-|nuORF	MSMS	A375_MHC_IP_R1	1	455.6483154296875	3	455.573837	1363.69968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.431	1	55.431	54.931	55.931	0								0	0	0	0.16275	1	19824	19824		4.4062	0.28952	1		+		28994	24434	20728	20894	28393	28393					0.03238080577625624
LDPKILKFV	9	Unmodified	_LDPKILKFV_					0	0	0		ENSG00000173530|ENST00000312584|TNFRSF10D	ENSG00000173530|ENST00000312584|TNFRSF10D	ENSG00000173530|ENST00000312584|TNFRSF10D	MULTI-SECPEP	A375_MHC_IP_R1	1	537.2413330078125	2	536.841885	1071.66922	-0.8504	-0.00045653	0.47153	0.00025314	-0.37887	-0.00020339	536.8420576498715	80.724	0.65929	80.724	80.441	81.1	0					36	12	4	0	0	0	0.59098	1	29468	29468		16.149	2.2431	1	10402000			28995	7804	20729	20895	28394	28394					0.13624953930570882
LDPKKDII	8	Unmodified	_LDPKKDII_					0	0	0		tr|U7T422|U7T422_FUSNUPeptidyl-tRNAhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pthPE=3SV=1	tr|U7T422|U7T422_FUSNUPeptidyl-tRNAhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pthPE=3SV=1	tr|U7T422|U7T422_FUSNUPeptidyl-tRNAhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pthPE=3SV=1	MSMS	A375_MHC_IP_R1	1	471.3059997558594	2	471.286943	940.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.462	1	87.462	86.962	87.962	0								0	0	0	0.16876	1	32091	32091		14.582	0	1				28996	29991	20730	20896	28395	28395					0.0866752859137705
LDPKLLKNILY	11	Unmodified	_LDPKLLKNILY_					0	0	0			REV__ENSG00000162630|ENST00000367434|B3GALT2	REV__ENSG00000162630|ENST00000367434|B3GALT2	MSMS	A375_MHC_IP_R1	1	665.2343139648438	2	665.410663	1328.80677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.892	1	72.892	72.392	73.392	0								0	0	0	0.16331	1	26529	26529		1.4819	0.15237	1		+		28997	20280	20731	20897	28396	28396					0.1555223773934813
LDPLRVQPRL	10	Unmodified	_LDPLRVQPRL_					0	0	0			REV__ENST00000532962.5_1_11:43902410-43902539:+|nuORF	REV__ENST00000532962.5_1_11:43902410-43902539:+|nuORF	MSMS	A375_MHC_IP_R1	1	603.97314453125	2	603.869497	1205.72444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.21	1	113.21	112.71	113.71	0								0	0	0	0.15465	1	41495	41495		5.7319	2.1354	1		+		28998	25872	20732	20898	28397	28397					0.12980760451023343
LDPLSMDPV	9	Unmodified	_LDPLSMDPV_					0	0	0			REV__ENST00000528842.1_1_8:145537053-145537718:+|nuORF	REV__ENST00000528842.1_1_8:145537053-145537718:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	493.6997375488281	2	493.746793	985.479033	-0.46347	-0.00022884	-0.12551	-6.1972E-05	-0.58898	-0.00029081	493.74665098986185	64.117	2.5427	64.857	64.139	66.682	0.74023					78	49	2	0	0	0	0.43185	1	24967	24967		23.148	1.4018	1	1701300	+		28999	21871	20733	20899	28398	28398					-0.01428700793974258
LDPNLVRLW	9	Unmodified	_LDPNLVRLW_					0	0	0			REV__nc|ENSG00000101057|P10244-2|MYBL2	REV__nc|ENSG00000101057|P10244-2|MYBL2	MSMS	A375_MHC_IP_R2	2	563.3580322265625	2	563.324391	1124.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.046	1	84.785	84.285	85.285	0.73962								0	0	0	0.15486	1	31947	31947		7.9102	0.62092	1		+		29000	17140	20734	20900	28399	28399					0.07689711122611698
LDPNPGDLY	9	Unmodified	_LDPNPGDLY_					0	0	0		ENSG00000146950|ENST00000380913|SHROOM2	ENSG00000146950|ENST00000380913|SHROOM2	ENSG00000146950|ENST00000380913|SHROOM2	MULTI-MSMS	A375_MHC_IP_R2	2	502.1658630371094	2	502.24019	1002.46583	-0.5693	-0.00028592	-2.4746	-0.0012429	-3.0439	-0.0015288	502.23881074114627	73.445	0.45789	74.181	73.938	74.396	0.73541					10	8	2	0	0	0	0.44024	1	27846	27846		22.736	3.2973	1	679510			29001	5647	20735	20901	28400	28400					-0.035308155817233455
LDPNQNRGDP	10	Unmodified	_LDPNQNRGDP_					0	0	0			REV__ENSG00000110395|ENST00000264033|CBL	REV__ENSG00000110395|ENST00000264033|CBL	MULTI-MSMS	A375_MHC_IP_R1	1	563.668701171875	2	563.267801	1124.52105	-0.67258	-0.00037884	3.9798	0.0022417	3.3072	0.0018629	563.7706799918642	36.799	0.40337	36.799	36.592	36.996	0					17	7	3	0	0	0	0.50967	1	12378	12378		27.629	3.6082	1	3158100	+		29002	17626	20736	20902	28401	28401					-0.03623009061220728
LDPNQNRGDP	10	Unmodified	_LDPNQNRGDP_					0	0	0			REV__ENSG00000110395|ENST00000264033|CBL	REV__ENSG00000110395|ENST00000264033|CBL	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	563.267801	1124.52105	-0.67258	-0.00037884	3.9798	0.0022417	3.3072	0.0018629	563.7706799918642	36.799	0.40337	36.799	36.592	36.996	0	-0.0086104	0.0010127	NaN	27.629	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3158100	+		29003	17626	20736	20902							-0.03623009061220728
LDPPTHHFEL	10	Unmodified	_LDPPTHHFEL_					0	0	0		nc|ENSG00000154222|Q5T0F9-3|CC2D1B;ENSG00000154222|ENST00000284376|CC2D1B;nc|ENSG00000154222|Q5T0F9|CC2D1B;nc|ENSG00000154222|Q5T0F9-4|CC2D1B;ENST00000491136.6_1_1:52820057-52823576:-|nuORF	nc|ENSG00000154222|Q5T0F9-3|CC2D1B	nc|ENSG00000154222|Q5T0F9-3|CC2D1B	MULTI-SECPEP	A375_MHC_IP_R2	2	402.2908630371094	3	402.536501	1204.58767	-0.02837	-1.142E-05	-0.88631	-0.00035677	-0.91468	-0.00036819	402.53612625127863	31.041	0.65844	31.76	31.367	32.026	0.71857					17	12	2	0	0	0	0.85226	1	10791	10791		12.873	8.4665	1	1322600			29004	6070	20737	20903	28402	28402					-0.006437734993369304
LDPQRIKMKY	10	Unmodified	_LDPQRIKMKY_					0	0	0		ENSG00000138622|ENST00000261917|HCN4	ENSG00000138622|ENST00000261917|HCN4	ENSG00000138622|ENST00000261917|HCN4	MULTI-MSMS	A375_MHC_IP_R1	1	431.3101501464844	3	431.244552	1290.71183	-0.39039	-0.00016835	0.74316	0.00032048	0.35277	0.00015213	431.578981977413	66.783	0.30627	66.783	66.58	66.887	0					7	5	2	0	0	0	0.71866	1	24177	24177		1.9064	0.31409	1	975830			29005	5010	20738	20904	28403	28403					0.07809980996489685
LDPQTLDTEQQ	11	Unmodified	_LDPQTLDTEQQ_					0	0	0		ENST00000491700.1_1_1:114523533-114524388:+|nuORF;nc|ENSG00000116774|Q9NRN5-2|OLFML3;ENSG00000116774|ENST00000320334|OLFML3	ENST00000491700.1_1_1:114523533-114524388:+|nuORF	ENST00000491700.1_1_1:114523533-114524388:+|nuORF	MSMS	A375_MHC_IP_R2	2	644.2767944335938	2	644.306789	1286.59903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.171	1	76.912	76.412	77.412	0.74052								0	0	0	0.16213	1	28918	28918		7.609	0.50723	1				29006	3431	20739	20905	28404	28404					-0.03281040986507833
LDPTAHYNI	9	Unmodified	_LDPTAHYNI_					0	0	0		ENSG00000136535|ENST00000389554|TBR1	ENSG00000136535|ENST00000389554|TBR1	ENSG00000136535|ENST00000389554|TBR1	MULTI-MSMS	A375_MHC_IP_R2	2	522.210205078125	2	522.261456	1042.50836	-0.6073	-0.00031717	-0.40067	-0.00020925	-1.008	-0.00052642	522.2614244583598	64.864	0.91467	65.602	65.206	66.121	0.73811					37	17	3	0	0	0	0.58047	1	24442	24442		15.847	1.2655	1	3576200			29007	4796	20740	20906	28405	28405					-0.011194204534831442
LDPTAHYNI	9	Unmodified	_LDPTAHYNI_					0	0	0		ENSG00000136535|ENST00000389554|TBR1	ENSG00000136535|ENST00000389554|TBR1	ENSG00000136535|ENST00000389554|TBR1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	522.261456	1042.50836	-0.6073	-0.00031717	-0.40067	-0.00020925	-1.008	-0.00052642	522.2614244583598	64.864	0.91467	65.602	65.206	66.121	0.73811	-0.056175	3.4423E-06	NaN	15.847	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3576200			29008	4796	20740	20906							-0.011194204534831442
LDPTFQEPPV	10	Unmodified	_LDPTFQEPPV_					0	0	0		ENSG00000104941|ENST00000221538|RSPH6A	ENSG00000104941|ENST00000221538|RSPH6A	ENSG00000104941|ENST00000221538|RSPH6A	MULTI-SECPEP	A375_MHC_IP_R2	2	571.1635131835938	2	571.790047	1141.56554	-0.50575	-0.00028918	-0.31139	-0.00017805	-0.81714	-0.00046723	571.7917334630416	55.803	0.81654	56.553	56.438	57.255	0.75015					27	15	2	0	0	0	0.91556	1	21177	21177		10.074	3.8681	1	1878800			29009	2555	20741	20907	28406	28406					0.0004200203222808341
LDPTLGADKVM	11	Unmodified	_LDPTLGADKVM_					0	0	0			REV__ENST00000578759.1_1_17:60214444-60217453:-|nuORF	REV__ENST00000578759.1_1_17:60214444-60217453:-|nuORF	MSMS	A375_MHC_IP_R1	1	387.2557373046875	3	387.205763	1158.59546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.41	1	30.41	29.91	30.91	0								0	0	0	0.16265	1	9660	9660		2.2527	0	1		+		29010	17025	20742	20908	28407	28407					0.02250617705908553
LDPVGLIRTL	10	Unmodified	_LDPVGLIRTL_					0	0	0			REV__ENSG00000165660|ENST00000298492|ABRAXAS2	REV__ENSG00000165660|ENST00000298492|ABRAXAS2	MULTI-SECPEP	A375_MHC_IP_R1	1	548.1373291015625	2	548.839874	1095.66519	-0.58938	-0.00032347	-0.41219	-0.00022623	-1.0016	-0.0005497	548.8397579311746	91.488	0.4564	91.488	91.35	91.807	0					13	8	3	0	0	0	0.91556	1	33584	33584		14.838	3.198	1	697980	+		29011	20607	20743	20909	28408	28408					0.12118864436865806
LDPVLRVG	8	Unmodified	_LDPVLRVG_					0	0	0			REV__nc|ENSG00000156299|Q13009-2|TIAM1	REV__nc|ENSG00000156299|Q13009-2|TIAM1	MULTI-SECPEP	A375_MHC_IP_R1	1	435.16607666015625	2	434.766178	867.517802	-0.13012	-5.657E-05	0.0071157	3.0937E-06	-0.123	-5.3476E-05	434.76606140247554	40.752	0.30352	40.752	40.609	40.913	0					8	5	2	0	0	0	0.972	1	14060	14060		4.756	0	1	1361700	+		29012	19975	20744	20910	28409	28409					0.07874392622727555
LDQAKERD	8	Unmodified	_LDQAKERD_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-SECPEP	A375_MHC_IP_R1	1	975.1325073242188	1	974.49015	973.482873	0.49201	0.00047945	-0.25189	-0.00024547	0.24011	0.00023399	974.4876004819129	115.84	0.35549	115.84	115.63	115.99	0					9	6	2	0	0	0	0.96266	1	42413	42413		11.64	0	1	2241800	+		29013	22428	20745	20911	28410	28410					-0.004928949759005263
LDQDDDDDP	9	Unmodified	_LDQDDDDDP_					0	0	0		nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-MSMS	A375_MHC_IP_R2	2	524.591552734375	2	524.191091	1046.36763	-0.354	-0.00018556	0.95261	0.00049935	0.59861	0.00031379	524.1914381600471	47.337	0.71444	48.099	47.817	48.532	0.76128					19	13	2	0	0	0	0.67332	1	17765	17765		9.3831	1.473	1	2906700			29014	6175	20746	20912	28411	28411					-0.15370088688223404
LDQEEMLL	8	Unmodified	_LDQEEMLL_					0	0	0			REV__ENSG00000173442|ENST00000309295|EHBP1L1	REV__ENSG00000173442|ENST00000309295|EHBP1L1	MSMS	A375_MHC_IP_R2	2	495.6969909667969	2	495.74425	989.473948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.116	1	62.858	62.358	63.358	0.74263								0	0	0	0.16876	1	23543	23543		19.439	2.3261	1		+		29015	21222	20747	20913	28412	28412					-0.02121004656578407
LDQERRRNKKR	11	Unmodified	_LDQERRRNKKR_					0	0	0		nc|ENSG00000105419|Q99687-3|MEIS3;ENSG00000105419|ENST00000558555|MEIS3;ENST00000561204.5_1_19:47909736-47921444:-|nuORF;nc|ENSG00000105419|Q99687-2|MEIS3	nc|ENSG00000105419|Q99687-3|MEIS3	nc|ENSG00000105419|Q99687-3|MEIS3	MSMS	A375_MHC_IP_R1	1	749.9364013671875	2	749.937296	1497.86004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.789	1	79.789	79.289	80.289	0								0	0	0	0.16353	1	29127	29127		0.35063	0	1				29016	2605	20748	20914	28413	28413					0.13102428294519086
LDQFYYLY	8	Unmodified	_LDQFYYLY_					0	0	0			REV__ENST00000502271.5_1_5:53181920-53182097:-|nuORF	REV__ENST00000502271.5_1_5:53181920-53182097:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	562.57470703125	2	562.768583	1123.52261	-0.64716	-0.0003642	0.4569	0.00025713	-0.19026	-0.00010707	562.768873190662	85.017	1.4786	85.017	84.442	85.921	0					45	28	2	0	0	0	0.75322	1	31234	31234		19.439	0.18201	1	5637600	+		29017	25497	20749	20915	28414	28414					-0.03420768025171128
LDQGRGLYAWI	11	Unmodified	_LDQGRGLYAWI_					0	0	0			REV__ENST00000602503.1_1_1:23408727-23408946:+|nuORF	REV__ENST00000602503.1_1_1:23408727-23408946:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	431.1186828613281	3	431.2313	1290.67207	-0.2205	-9.5089E-05	-0.042103	-1.8156E-05	-0.26261	-0.00011324	431.2311212488709	76.471	0.45389	76.471	76.219	76.673	0					12	8	2	0	0	0	0.99151	1	27919	27919		7.9454	0.46833	1	937340	+		29018	26513	20750	20916	28415	28415					0.03836177317407419
LDQHEKIV	8	Unmodified	_LDQHEKIV_					0	0	0			REV__nc|ENSG00000138798|P01133-2|EGF	REV__nc|ENSG00000138798|P01133-2|EGF	MULTI-SECPEP	A375_MHC_IP_R1	1	491.6715087890625	2	491.271824	980.529095	-0.55304	-0.0002717	-0.22765	-0.00011184	-0.7807	-0.00038354	491.2716980674752	25.841	0.50706	25.841	25.714	26.221	0					16	9	2	0	0	0	0.95424	1	7635	7635		13.906	5.7505	1	7651600	+		29019	19124	20751	20917	28416	28416					0.038051699261814065
LDQHTSLAT	9	Unmodified	_LDQHTSLAT_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MSMS	A375_MHC_IP_R2	2	494.15179443359375	2	493.251089	984.487624	-0.49991	-0.00024658	-0.41184	-0.00020314	-0.91175	-0.00044972	493.25090871375494	108.07	1.9397	108.83	108.1	110.04	0.75436					96	37	4	0	0	0	0.60101	1	40967	40967		14.838	4.0143	1	26419000			29020	1530	20752	20918	28417	28417					-0.005240108331236115
LDQKLLEIKKN	11	Unmodified	_LDQKLLEIKKN_					0	0	0			REV__tr|U7SIU1|U7SIU1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02231PE=4SV=1	REV__tr|U7SIU1|U7SIU1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02231PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	670.8056640625	2	671.408652	1340.80275	-0.56793	-0.00038131	0.66939	0.00044944	0.10146	6.8123E-05	671.409176680776	137.09	0.51437	137.2	136.92	137.43	0.11134					13	9	2	0	0	0	1.001	1	53821	53821		0.26902	0	1	2423500	+		29021	28217	20753	20919	28418	28418					0.1459814824561363
LDQKMSEYN	9	Unmodified	_LDQKMSEYN_					0	0	0			REV__ACSM3|p.F50L|1|0.55|ENSG00000005187|chr16:20770184-20770184|C/A|missense_variant	REV__ACSM3|p.F50L|1|0.55|ENSG00000005187|chr16:20770184-20770184|C/A|missense_variant	MSMS	A375_MHC_IP_R2	2	564.1760864257812	2	564.255514	1126.49647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.854	1	60.601	60.101	61.101	0.74714								0	0	0	0.14169	1	22651	22651		29.082	9.7196	1		+		29022	15300	20754	20920	28419	28419					-0.06171405258965024
LDQLDGSFDDP	11	Unmodified	_LDQLDGSFDDP_					0	0	0		ENST00000465876.5_1_1:60281005-60331594:+|nuORF;nc|ENSG00000134709|Q9UJC3-2|HOOK1;ENSG00000134709|ENST00000371208|HOOK1	ENST00000465876.5_1_1:60281005-60331594:+|nuORF	ENST00000465876.5_1_1:60281005-60331594:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	611.235107421875	2	611.267133	1220.51971	0.055209	3.3747E-05	-1.0532	-0.00064381	-0.99803	-0.00061007	611.2667975515722	69.22	0.65947	69.22	68.819	69.478	0					35	12	4	0	0	0	0.62292	1	25167	25167		21.537	2.28	1	6684500			29023	4598	20755	20921	28420	28420					-0.08172687940646028
LDQLREHLL	9	Unmodified	_LDQLREHLL_					0	0	0			REV__ENSG00000135842|ENST00000367511|NIBAN1	REV__ENSG00000135842|ENST00000367511|NIBAN1	MULTI-SECPEP	A375_MHC_IP_R1	1	568.6741943359375	2	568.824755	1135.63496	-0.11222	-6.3834E-05	-0.44568	-0.00025351	-0.5579	-0.00031735	568.8244151213958	54.044	0.40385	54.044	53.809	54.213	0					16	7	3	0	0	0	0.59098	1	19318	19318		16.149	0	1	3410300	+		29024	18891	20756	20922	28421	28421					0.07256505771670163
LDQLRLLNKRD	11	Unmodified	_LDQLRLLNKRD_					0	0	0			REV__ENSG00000092054|ENST00000355349|MYH7	REV__ENSG00000092054|ENST00000355349|MYH7	MSMS	A375_MHC_IP_R1	1	692.8760375976562	2	692.406975	1382.7994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.334	1	95.334	94.834	95.834	0								0	0	0	0.16334	1	35041	35041		1.3295	0	1		+		29025	16961	20757	20923	28422	28422					0.12330898191589768
LDQLSFLKY	9	Unmodified	_LDQLSFLKY_					0	0	0			REV__ENSG00000128915|ENST00000261520|ICE2	REV__ENSG00000128915|ENST00000261520|ICE2	MSMS	A375_MHC_IP_R1	1	563.72412109375	2	563.810782	1125.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.413	1	79.413	78.913	79.913	0								0	0	0	0.15283	1	28988	28988		16.942	1.0951	1		+		29026	18475	20758	20924	28423	28423					0.04923182791549152
LDQLVGFFNF	10	Unmodified	_LDQLVGFFNF_					0	0	0		ENST00000466781.5_1_22:26864510-26877728:-|nuORF;ENST00000485842.5_1_22:26849853-26868905:-|nuORF;ENST00000496385.5_1_22:26862186-26875401:-|nuORF;nc|ENSG00000100099|Q9NQG7-2|HPS4;nc|ENSG00000100099|Q9NQG7-3|HPS4;ENSG00000100099|ENST00000398145|HPS4;nc|ENSG00000100099|Q9NQG7-4|HPS4	ENST00000466781.5_1_22:26864510-26877728:-|nuORF	ENST00000466781.5_1_22:26864510-26877728:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	400.9412536621094	3	400.541363	1198.60226	-0.0024421	-9.7816E-07	0.19292	7.7271E-05	0.19047	7.6293E-05	400.54120158216006	62.945	0.50454	63.687	63.434	63.938	0.74263					15	9	2	0	0	0	0.71361	1	23904	23904		3.3196	0.58445	1	2616100			29027	2117	20759	20925	28424	28424					0.010902986488190436
LDQNECIYK	9	Unmodified	_LDQNECIYK_					0	0	0			REV__ALB|p.S294L|1|0.32|ENSG00000163631|chr4:73413457-73413457|C/T|missense_variant	REV__ALB|p.S294L|1|0.32|ENSG00000163631|chr4:73413457-73413457|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	563.22509765625	2	563.265881	1124.51721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.362	1	92.097	91.597	92.597	0.7345								0	0	0	0.15411	1	34756	34756		14.838	1.3304	1		+		29028	15354	20760	20926	28425	28425					-0.04006814879312515
LDQPKVEGLL	10	Unmodified	_LDQPKVEGLL_					0	0	0		ARHGAP20|p.E629K|1|0.14|ENSG00000137727|chr11:110581061-110581061|C/T|missense_variant	ARHGAP20|p.E629K|1|0.14|ENSG00000137727|chr11:110581061-110581061|C/T|missense_variant	ARHGAP20|p.E629K|1|0.14|ENSG00000137727|chr11:110581061-110581061|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	371.3083801269531	3	371.216768	1110.62847	0.28228	0.00010479	-1.5405	-0.00057187	-1.2583	-0.00046709	371.21609310931814	62.43	0.40799	63.172	62.874	63.282	0.74263					10	7	2	0	0	0	0.94651	1	23692	23692		0.62683	0	1	541230			29029	171	20761	20927	28426	28426					0.07758567820292228
LDQQKDEL	8	Unmodified	_LDQQKDEL_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	A375_MHC_IP_R1	1	494.70849609375	2	494.750921	987.48729	-0.37304	-0.00018456	0.81561	0.00040352	0.44257	0.00021896	494.75094946510814	73.48	0.60772	73.48	73.235	73.843	0					21	11	2	0	0	0	0.77488	1	26892	26892		13.508	0	1	3666900			29030	1199	20762	20928	28427	28427					-0.006954305530030069
LDQQLGYTWGQ	11	Unmodified	_LDQQLGYTWGQ_					0	0	0			REV__RYR3|p.I1007L|1|0.25|ENSG00000198838|chr15:33633100-33633100|A/C|missense_variant	REV__RYR3|p.I1007L|1|0.25|ENSG00000198838|chr15:33633100-33633100|A/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	436.6479187011719	3	436.878815	1307.61462	-0.16202	-7.0782E-05	0.15767	6.8883E-05	-0.0043457	-1.8986E-06	437.212874367248	85.072	1.6267	85.808	84.916	86.543	0.73601					40	31	2	0	0	0	0.99482	1	32032	32032		3.8459	0	1	1079200	+		29031	27905	20763	20929	28428	28428					-0.026887096788186682
LDQRISFLH	9	Unmodified	_LDQRISFLH_					0	0	0		tr|U7SJJ3|U7SJJ3_FUSNUCRISPR-associatedendonucleaseCas1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas1PE=3SV=1	tr|U7SJJ3|U7SJJ3_FUSNUCRISPR-associatedendonucleaseCas1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas1PE=3SV=1	tr|U7SJJ3|U7SJJ3_FUSNUCRISPR-associatedendonucleaseCas1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas1PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	565.2117309570312	2	564.811648	1127.60874	-0.44756	-0.00025279	0.43374	0.00024498	-0.013821	-7.8065E-06	564.8117287214316	77.2	0.55685	77.2	76.93	77.486	0					24	10	3	0	0	0	0.4261	1	28170	28170		30.637	10.183	1	2859200			29032	29456	20764	20930	28429	28429					0.050042366001889604
LDQRISFLH	9	Unmodified	_LDQRISFLH_					0	0	0		tr|U7SJJ3|U7SJJ3_FUSNUCRISPR-associatedendonucleaseCas1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas1PE=3SV=1	tr|U7SJJ3|U7SJJ3_FUSNUCRISPR-associatedendonucleaseCas1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas1PE=3SV=1	tr|U7SJJ3|U7SJJ3_FUSNUCRISPR-associatedendonucleaseCas1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas1PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	565.2109375	2	564.811648	1127.60874	-0.4572	-0.00025823	-0.12573	-7.1014E-05	-0.58293	-0.00032925	564.8112961103941	76.242	0.40496	76.982	76.742	77.146	0.74052					18	7	3	0	0	0	0.49205	1	28963	28963		34.402	7.1785	1	2999900			29033	29456	20764	20930	28430	28430					0.050042366001889604
LDQRVRIRNR	10	Unmodified	_LDQRVRIRNR_					0	0	0			REV__ENSG00000160877|ENST00000292431|NACC1	REV__ENSG00000160877|ENST00000292431|NACC1	MULTI-SECPEP	A375_MHC_IP_R1	1	443.3354797363281	3	442.600609	1324.78	-0.35573	-0.00015745	0.29961	0.00013261	-0.056123	-2.484E-05	442.93517795739365	134.46	0.5567	134.46	134.32	134.88	0					19	10	3	0	0	0	0.94862	1	51884	51884		0.13989	0.13989	1	2591400	+		29034	20189	20765	20931	28431	28431					0.13059986691359882
LDQSDHSVYF	10	Unmodified	_LDQSDHSVYF_					0	0	0			REV__nc|ENSG00000198929|O75052-3|NOS1AP	REV__nc|ENSG00000198929|O75052-3|NOS1AP	MULTI-MSMS	A375_MHC_IP_R2	2	606.228515625	2	605.772385	1209.53022	-0.29351	-0.0001778	-0.77758	-0.00047104	-1.0711	-0.00064883	605.7717397179673	43.23	0.50681	44.003	43.826	44.333	0.7724					14	9	2	0	0	0	0.71118	1	16214	16214		7.2892	0	1	3186200	+		29035	27451	20766	20932	28432	28432					-0.06616660495569704
LDQTEQIKL	9	Unmodified	_LDQTEQIKL_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	A375_MHC_IP_R1	1	544.2295532226562	2	544.303321	1086.59209	-0.59876	-0.00032591	0.77947	0.00042427	0.1807	9.8358E-05	544.8049375216132	64.382	0.55928	64.382	64.141	64.7	0					14	10	2	0	0	0	0.65246	1	23331	23331		15.847	9.6414	1	3765000	+		29036	19347	20767	20933	28433	28433					0.05225690923566617
LDQTPNVVPDP	11	Unmodified	_LDQTPNVVPDP_					0	0	0			REV__nc|ENSG00000114805|Q4KWH8-2|PLCH1	REV__nc|ENSG00000114805|Q4KWH8-2|PLCH1	MULTI-SECPEP	A375_MHC_IP_R2	2	398.6034240722656	3	398.871549	1193.59282	-0.27115	-0.00010816	0.05232	2.0869E-05	-0.21883	-8.7287E-05	398.8715265145907	28.158	0.60867	28.837	28.401	29.01	0.67857					15	11	3	0	0	0	0.98782	1	9626	9626		5.5233	3.931	1	2779700	+		29037	17842	20768	20934	28434	28434					0.0037648557263310067
LDQVRKQQKEH	11	Unmodified	_LDQVRKQQKEH_					0	0	0		ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D	ENSG00000167548|ENST00000301067|KMT2D	ENSG00000167548|ENST00000301067|KMT2D	MULTI-MSMS	A375_MHC_IP_R2	2	704.9533081054688	2	704.886407	1407.75826	-0.60484	-0.00042634	2.0162	0.0014212	1.4113	0.00099484	704.8879081152096	117.8	0.55666	118.41	117.99	118.54	0.60909					16	10	2	0	0	0	0.73135	1	44607	44607		7.609	1.8771	1	32236000			29038	7193	20769	20935	28435	28435					0.07069137152120675
LDQYTGNLV	9	Unmodified	_LDQYTGNLV_					0	0	0		ENST00000306108.9_1_2:29073093-29073940:-|nuORF	ENST00000306108.9_1_2:29073093-29073940:-|nuORF	ENST00000306108.9_1_2:29073093-29073940:-|nuORF	MSMS	A375_MHC_IP_R1	1	511.6817626953125	2	511.761289	1021.50803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.491	1	73.491	72.991	73.991	0								0	0	0	0.15003	1	26759	26759		21.537	1.0834	1				29039	10575	20770	20936	28436	28436					-0.0018684017333043812
LDRAAVRLHK	10	Unmodified	_LDRAAVRLHK_					0	0	0			REV__ENSG00000135226|ENST00000335568|UGT2B28	REV__ENSG00000135226|ENST00000335568|UGT2B28	MSMS	A375_MHC_IP_R1	1	589.890380859375	2	589.859464	1177.70437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.932	1	85.932	85.432	86.432	0								0	0	0	0.15549	1	31500	31500		2.9952	0.26005	1		+		29040	18832	20771	20937	28437	28437					0.12263009511070777
LDRAFRVV	8	Unmodified	_LDRAFRVV_					0	0	0			REV__LRRC58|p.V252A|1|0.12|ENSG00000163428|chr3:120335014-120335014|A/G|missense_variant	REV__LRRC58|p.V252A|1|0.12|ENSG00000163428|chr3:120335014-120335014|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	488.6900634765625	2	488.290351	974.566149	-0.70262	-0.00034308	-0.31007	-0.00015141	-1.0127	-0.00049449	488.2901634945777	36.208	0.45948	36.979	36.698	37.157	0.7709					10	8	2	0	0	0	0.75322	1	13219	13219		19.439	2.4967	1	2224000	+		29041	26952	20772	20938	28438	28438					0.07784886262618329
LDRAFRVV	8	Unmodified	_LDRAFRVV_					0	0	0			REV__LRRC58|p.V252A|1|0.12|ENSG00000163428|chr3:120335014-120335014|A/G|missense_variant	REV__LRRC58|p.V252A|1|0.12|ENSG00000163428|chr3:120335014-120335014|A/G|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	488.290351	974.566149	-0.1745	-8.5206E-05	-0.5051	-0.00024664	-0.6796	-0.00033184	488.2899533571879	37.275	0.5082	37.275	36.945	37.454	0	0.14784	-7.6742E-05	NaN	19.439	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1989500	+		29042	26952	20772	20938							0.07784886262618329
LDRAFRVV	8	Unmodified	_LDRAFRVV_					0	0	0			REV__LRRC58|p.V252A|1|0.12|ENSG00000163428|chr3:120335014-120335014|A/G|missense_variant	REV__LRRC58|p.V252A|1|0.12|ENSG00000163428|chr3:120335014-120335014|A/G|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	488.290351	974.566149	-0.70262	-0.00034308	-0.31007	-0.00015141	-1.0127	-0.00049449	488.2901634945777	36.208	0.45948	36.979	36.698	37.157	0.7709	-0.14784	0.00011372	NaN	19.439	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2224000	+		29043	26952	20772	20938							0.07784886262618329
LDRAIRDV	8	Unmodified	_LDRAIRDV_					0	0	0			REV__ENSG00000132275|ENST00000254605|RRP8	REV__ENSG00000132275|ENST00000254605|RRP8	MULTI-MSMS	A375_MHC_IP_R2	2	479.67718505859375	2	479.277441	956.540328	-0.44288	-0.00021226	0.18313	8.7771E-05	-0.25974	-0.00012449	479.27740587608423	109.27	5.8121	110.01	107.38	113.19	0.74683					289	113	4	0	0	0	0.77515	1	40380	40380		12.532	0.89125	1	18458000	+		29044	18643	20773	20939	28439	28439					0.06031992020314192
LDRDSTSV	8	Unmodified	_LDRDSTSV_					0	0	0		nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP;SRCAP|p.P3023L|1|0.49|ENSG00000080603|chr16:30739108-30739108|C/T|missense_variant	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MULTI-SECPEP	A375_MHC_IP_R2	2	447.1217041015625	2	446.722164	891.429775	-0.25816	-0.00011533	-0.29652	-0.00013246	-0.55469	-0.00024779	446.7219354372738	90.094	0.66519	90.826	90.391	91.056	0.7318					21	12	2	0	0	0	0.972	1	34233	34233		5.7604	0	1	2761100			29045	1717	20774	20940	28440	28440					-0.020282727585708926
LDREAVSFAQ	10	Unmodified	_LDREAVSFAQ_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MSMS	A375_MHC_IP_R2	2	568.2890625	2	568.290745	1134.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.071	1	98.831	98.331	99.331	0.75977								0	0	0	0.1524	1	37212	37212		13.042	1.4022	1		+		29046	21494	20775	20941	28441	28441					0.005036361209931783
LDREEEYY	8	Unmodified	_LDREEEYY_					0	0	0		TXNDC15|p.P141L|1|0.18|ENSG00000113621|chr5:134888013-134888013|C/T|missense_variant	TXNDC15|p.P141L|1|0.18|ENSG00000113621|chr5:134888013-134888013|C/T|missense_variant	TXNDC15|p.P141L|1|0.18|ENSG00000113621|chr5:134888013-134888013|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	559.1458740234375	2	558.745836	1115.47712	-0.54344	-0.00030364	1.386	0.0007744	0.84253	0.00047076	558.746301398328	93.846	0.55677	94.591	94.312	94.869	0.74474					18	10	2	0	0	0	0.71318	1	35700	35700		30.637	3.0077	1	1644900			29047	30101	20776	20942	28442	28442					-0.0760003827822402
LDRELRPEE	9	Unmodified	_LDRELRPEE_					0	0	0		ENSG00000167791|ENST00000294288|CABP2	ENSG00000167791|ENST00000294288|CABP2	ENSG00000167791|ENST00000294288|CABP2	MULTI-MSMS	A375_MHC_IP_R1	1	579.220458984375	2	578.801477	1155.5884	0.070739	4.0944E-05	0.29245	0.00016927	0.36319	0.00021021	578.8017349153146	92.643	0.56028	92.643	92.413	92.973	0					15	10	2	0	0	0	0.6343	1	34024	34024		12.873	0.63195	1	2370800			29048	7225	20777	20943	28443	28443					0.01683021149688102
LDRESTSHY	9	Unmodified	_LDRESTSHY_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	554.6564331054688	2	554.256902	1106.49925	-0.43205	-0.00023947	0.79801	0.0004423	0.36596	0.00020283	554.2568560814149	42.439	0.60694	42.439	42.132	42.739	0					29	11	4	0	0	0	0.4261	1	14673	14673		30.637	2.142	1	7459300			29049	1791	20778	20944	28444	28444					-0.04973813809783678
LDRFENIKV	9	Unmodified	_LDRFENIKV_					0	0	0		SLC27A6|p.G353E|1|0.31|ENSG00000113396|chr5:129015973-129015973|G/A|missense_variant	SLC27A6|p.G353E|1|0.31|ENSG00000113396|chr5:129015973-129015973|G/A|missense_variant	SLC27A6|p.G353E|1|0.31|ENSG00000113396|chr5:129015973-129015973|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	378.6046142578125	3	378.548629	1132.62406	0.046001	1.7414E-05	0.35137	0.00013301	0.39738	0.00015043	378.54875089818495	30.678	0.7074	30.678	30.453	31.16	0					29	13	3	0	0	0	0.6629	1	9848	9848		10.315	0	1	5591600			29050	29179	20779	20945	28445	28445					0.06305103397357925
LDRFENIKV	9	Unmodified	_LDRFENIKV_					0	0	0		SLC27A6|p.G353E|1|0.31|ENSG00000113396|chr5:129015973-129015973|G/A|missense_variant	SLC27A6|p.G353E|1|0.31|ENSG00000113396|chr5:129015973-129015973|G/A|missense_variant	SLC27A6|p.G353E|1|0.31|ENSG00000113396|chr5:129015973-129015973|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	378.548629	1132.62406	0.046001	1.7414E-05	0.35137	0.00013301	0.39738	0.00015043	378.54875089818495	30.678	0.7074	30.678	30.453	31.16	0	0.058557	-4.0825E-05	NaN	10.315	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5591600			29051	29179	20779	20945							0.06305103397357925
LDRGIPVEL	9	Unmodified	_LDRGIPVEL_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MSMS	A375_MHC_IP_R1	1	506.5748291015625	2	506.295299	1010.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.264	1	95.264	94.764	95.764	0								0	0	0	0.15486	1	35013	35013		3.9444	0	1				29052	3579	20780	20946	28446	28446					0.0711802947733986
LDRGSLIGH	9	Unmodified	_LDRGSLIGH_					0	0	0			REV__ENSG00000152127|ENST00000281923|MGAT5	REV__ENSG00000152127|ENST00000281923|MGAT5	MULTI-MSMS	A375_MHC_IP_R1	1	484.6693420410156	2	484.269616	966.524678	0.098725	4.781E-05	-0.008806	-4.2645E-06	0.089919	4.3545E-05	484.26954616672464	48.486	0.40464	48.486	48.274	48.679	0					13	7	2	0	0	0	0.34064	1	17110	17110		27.629	3.6082	1	2198000	+		29053	19792	20781	20947	28447	28447					0.04007705503295256
LDRGSLIGH	9	Unmodified	_LDRGSLIGH_					0	0	0			REV__ENSG00000152127|ENST00000281923|MGAT5	REV__ENSG00000152127|ENST00000281923|MGAT5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	484.269616	966.524678	0.098725	4.781E-05	-0.008806	-4.2645E-06	0.089919	4.3545E-05	484.26954616672464	48.486	0.40464	48.486	48.274	48.679	0	0.06716	-5.6452E-05	NaN	27.629	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2198000	+		29054	19792	20781	20947							0.04007705503295256
LDRGSLIGH	9	Unmodified	_LDRGSLIGH_					0	0	0			REV__ENSG00000152127|ENST00000281923|MGAT5	REV__ENSG00000152127|ENST00000281923|MGAT5	MULTI-MATCH	A375_MHC_IP_R2	2		2	484.269616	966.524678	-0.44939	-0.00021762	0.33405	0.00016177	-0.11534	-5.5856E-05	484.2694907126439	47.591	0.45753	48.352	48.174	48.632	0.76128	-0.06716	0.00027561	NaN	27.629	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1839000	+		29055	19792	20781	20947							0.04007705503295256
LDRHVISKSHL	11	Unmodified	_LDRHVISKSHL_					0	0	0			REV__nc|ENSG00000139908|Q6SA08-3|TSSK4	REV__nc|ENSG00000139908|Q6SA08-3|TSSK4	MULTI-SECPEP	A375_MHC_IP_R2	2	435.1659240722656	3	435.585966	1303.73607	-0.59976	-0.00026125	-0.31859	-0.00013877	-0.91835	-0.00040002	435.9201146889029	61.575	0.30126	62.32	62.172	62.473	0.74503					8	5	2	0	0	0	0.9889	1	23360	23360		4.1166	0	1	794710	+		29056	27259	20782	20948	28448	28448					0.09634957474372641
LDRIAAATL	9	Unmodified	_LDRIAAATL_					0	0	0			REV__SLC9C1|p.P151S|1|0.57|ENSG00000172139|chr3:112277728-112277728|G/A|missense_variant	REV__SLC9C1|p.P151S|1|0.57|ENSG00000172139|chr3:112277728-112277728|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	472.6822204589844	2	472.282192	942.549831	-0.36273	-0.00017131	0.22788	0.00010763	-0.13485	-6.3685E-05	472.28236176562433	63.263	0.45972	63.263	63.018	63.477	0					14	8	2	0	0	0	0.082375	1	22880	22880		53.833	1.5644	1	2885500	+		29057	21123	20783	20949	28449	28449					0.0762576030585933
LDRIAAATL	9	Unmodified	_LDRIAAATL_					0	0	0			REV__SLC9C1|p.P151S|1|0.57|ENSG00000172139|chr3:112277728-112277728|G/A|missense_variant	REV__SLC9C1|p.P151S|1|0.57|ENSG00000172139|chr3:112277728-112277728|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	472.68182373046875	2	472.282192	942.549831	-0.71392	-0.00033717	0.077938	3.6808E-05	-0.63598	-0.00030036	472.2822069150284	62.328	0.45847	63.071	62.824	63.282	0.74263					15	8	2	0	0	0	0.10411	1	23626	23626		49.933	0.37871	1	2114400	+		29058	21123	20783	20949	28450	28450					0.0762576030585933
LDRIAAATL	9	Unmodified	_LDRIAAATL_					0	0	0			REV__SLC9C1|p.P151S|1|0.57|ENSG00000172139|chr3:112277728-112277728|G/A|missense_variant	REV__SLC9C1|p.P151S|1|0.57|ENSG00000172139|chr3:112277728-112277728|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	472.282192	942.549831	-0.36273	-0.00017131	0.22788	0.00010763	-0.13485	-6.3685E-05	472.28236176562433	63.263	0.45972	63.263	63.018	63.477	0	0.095947	6.7692E-05	NaN	53.833	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2885500	+		29059	21123	20783	20949							0.0762576030585933
LDRIAAATL	9	Unmodified	_LDRIAAATL_					0	0	0			REV__SLC9C1|p.P151S|1|0.57|ENSG00000172139|chr3:112277728-112277728|G/A|missense_variant	REV__SLC9C1|p.P151S|1|0.57|ENSG00000172139|chr3:112277728-112277728|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	472.282192	942.549831	-0.71392	-0.00033717	0.077938	3.6808E-05	-0.63598	-0.00030036	472.2822069150284	62.328	0.45847	63.071	62.824	63.282	0.74263	-0.095947	-7.3943E-05	NaN	53.833	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2114400	+		29060	21123	20783	20949							0.0762576030585933
LDRIFTQLA	9	Unmodified	_LDRIFTQLA_					0	0	0			REV__nc|ENSG00000163618|Q9ULU8-2|CADPS	REV__nc|ENSG00000163618|Q9ULU8-2|CADPS	MSMS	A375_MHC_IP_R1	1	359.4281005859375	3	359.541475	1075.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.109	1	43.109	42.609	43.609	0								0	0	0	0.15486	1	14971	14971		6.6304	0	1		+		29061	20385	20784	20950	28451	28451					0.06781718368688416
LDRIIKPF	8	Unmodified	_LDRIIKPF_					0	0	0		ENSG00000176979|ENST00000512596|TRIM60	ENSG00000176979|ENST00000512596|TRIM60	ENSG00000176979|ENST00000512596|TRIM60	MULTI-SECPEP	A375_MHC_IP_R2	2	501.64117431640625	2	501.310752	1000.60695	-0.50044	-0.00025088	0.41259	0.00020684	-0.087847	-4.4038E-05	501.8135385638704	69.191	0.45715	69.927	69.575	70.032	0.73511					12	8	2	0	0	0	0.972	1	26229	26229		0.69038	0	1	605200			29062	8049	20785	20951	28452	28452					0.10667227582246142
LDRIRQKW	8	Unmodified	_LDRIRQKW_					0	0	0			REV__ENSG00000267508|ENST00000614994|ZNF285	REV__ENSG00000267508|ENST00000614994|ZNF285	MULTI-SECPEP	A375_MHC_IP_R2	2	372.6294860839844	3	372.220847	1113.64071	0.46249	0.00017215	0.31527	0.00011735	0.77776	0.0002895	372.2208124273706	45.736	0.29987	46.501	46.303	46.603	0.76519					8	5	2	0	0	0	0.972	1	17041	17041		3.2813	0	1	637510	+		29063	22931	20786	20952	28453	28453					0.0884364907399231
LDRKEQDYW	9	Unmodified	_LDRKEQDYW_					0	0	0			REV__ENST00000492494.5_1_1:45798942-45805603:-|nuORF	REV__ENST00000492494.5_1_1:45798942-45805603:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	418.931396484375	3	418.20341	1251.5884	-0.062885	-2.6299E-05	0.27822	0.00011635	0.21533	9.0053E-05	418.2034601754122	32.587	0.30082	32.587	32.434	32.734	0					7	5	2	0	0	0	0.76827	1	10576	10576		2.086	0	1	1209200	+		29064	18680	20787	20953	28454	28454					-0.027329788502811425
LDRKIEFSL	9	Unmodified	_LDRKIEFSL_					0	0	0		nc|ENSG00000161057|P35998-2|PSMC2;ENSG00000161057|ENST00000292644|PSMC2	nc|ENSG00000161057|P35998-2|PSMC2	nc|ENSG00000161057|P35998-2|PSMC2	MULTI-SECPEP	A375_MHC_IP_R2	2	374.4334411621094	3	374.21688	1119.62881	0.41167	0.00015405	-2.2799	-0.00085318	-1.8682	-0.00069913	374.21619343262444	42.142	0.35725	42.914	42.656	43.014	0.7724					8	6	2	0	0	0	0.73926	1	15598	15598		12.873	7.9756	1	278810			29065	6463	20788	20954	28455	28455					0.07377987540144204
LDRLLHTHP	9	Unmodified	_LDRLLHTHP_					0	0	0		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2;ENST00000484638.1_1_20:19915775-19951501:+|nuORF	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	MULTI-SECPEP	A375_MHC_IP_R1	1	367.6329650878906	3	367.876969	1100.60908	0.369	0.00013575	0.13177	4.8475E-05	0.50077	0.00018422	367.8769294835335	62.838	0.56385	62.838	62.505	63.069	0					16	10	2	0	0	0	0.77396	1	22647	22647		3.8763	0.59502	1	1830600			29066	4434	20789	20955	28456	28456					0.06279656320043614
LDRMFLWTFLF	11	Unmodified	_LDRMFLWTFLF_					0	0	0		ENSG00000169684|ENST00000299565|CHRNA5	ENSG00000169684|ENST00000299565|CHRNA5	ENSG00000169684|ENST00000299565|CHRNA5	MSMS	A375_MHC_IP_R2	2	744.5940551757812	2	744.889041	1487.76353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.528	1	99.288	98.788	99.788	0.75977								0	0	0	0.16312	1	37378	37378		2.4985	1.0166	1				29067	7430	20790	20956	28457	28457					0.039157246903869236
LDRPRRGCVC	10	Unmodified	_LDRPRRGCVC_					0	0	0			REV__ENST00000357736.8_1_17:79876417-79876633:-|nuORF	REV__ENST00000357736.8_1_17:79876417-79876633:-|nuORF	MSMS	A375_MHC_IP_R1	1	392.1478271484375	3	392.202582	1173.58592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.084	1	32.084	31.584	32.584	0								0	0	0	0.1524	1	10333	10333		7.9454	0	1		+		29068	23847	20791	20957	28458	28458					0.006065709394079022
LDRRRLRFSKR	11	Unmodified	_LDRRRLRFSKR_					0	0	0			REV__nc|ENSG00000078596|O43736-2|ITM2A	REV__nc|ENSG00000078596|O43736-2|ITM2A	MULTI-MSMS	A375_MHC_IP_R1	1	502.0420227050781	3	501.642809	1501.9066	-0.38106	-0.00019115	-0.86866	-0.00043576	-1.2497	-0.00062691	501.64234649989857	73.969	0.40599	73.969	73.74	74.146	0					13	7	2	0	0	0	0.73886	1	26977	26977		0.45452	0.046251	1	2227000	+		29069	16712	20792	20958	28459	28459					0.17571912916491783
LDRRYSTHETE	11	Unmodified	_LDRRYSTHETE_					0	0	0			REV__ENSG00000257335|ENST00000475668|MGAM	REV__ENSG00000257335|ENST00000475668|MGAM	MSMS	A375_MHC_IP_R2	2	703.7794799804688	2	703.836579	1405.65861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.02	1	117.68	117.18	118.18	0.65962								0	0	0	0.16265	1	44261	44261		4.897	1.9018	1		+		29070	22890	20793	20959	28460	28460					-0.027997252524755822
LDRSIHQY	8	Unmodified	_LDRSIHQY_					0	0	0			REV__ENSG00000173988|ENST00000595396|LRRC63	REV__ENSG00000173988|ENST00000595396|LRRC63	MSMS	A375_MHC_IP_R1	1	516.1664428710938	2	516.267073	1030.51959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.7	1	129.7	129.2	130.2	0								0	0	0	0.16876	1	49892	49892		19.439	0	1		+		29071	21257	20794	20960	28461	28461					0.0055540164069043385
LDRSKQLVCD	10	Unmodified	_LDRSKQLVCD_					0	0	0			REV__nc|ENSG00000123815|Q96D53-2|COQ8B	REV__nc|ENSG00000123815|Q96D53-2|COQ8B	MULTI-MSMS	A375_MHC_IP_R2	2	589.7052612304688	2	588.805705	1175.59686	-0.60949	-0.00035887	-0.93341	-0.0005496	-1.5429	-0.00090847	589.306423690419	72.89	0.6608	73.625	73.278	73.938	0.73541					26	12	3	0	0	0	0.66857	1	27723	27723		24.021	10.978	1	5924200	+		29072	18260	20795	20961	28462	28462					0.016082517946870212
LDRSLSCSV	9	Unmodified	_LDRSLSCSV_					0	0	0			REV__ENST00000493339.1_1_6:43112822-43113530:+|nuORF	REV__ENST00000493339.1_1_6:43112822-43113530:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	979.8883056640625	1	979.487707	978.48043	0.036588	3.5838E-05	0.078392	7.6784E-05	0.11498	0.00011262	979.4884957048233	132.43	0.46245	132.62	132.35	132.82	0.18953					11	8	2	0	0	0	0.74412	1	52128	52128		10.074	0	1	2505200	+		29073	25423	20796	20962	28463	28463					-0.009670667051977944
LDRTEQLNF	9	Unmodified	_LDRTEQLNF_					0	0	0			REV__nc|ENSG00000240268|A6NHM9|MOXD2P	REV__nc|ENSG00000240268|A6NHM9|MOXD2P	MULTI-SECPEP	A375_MHC_IP_R1	1	568.1991577148438	2	568.290745	1134.56694	-0.58236	-0.00033095	-0.57965	-0.00032941	-1.162	-0.00066036	568.7918754392737	66.779	0.45963	66.779	66.58	67.04	0					13	8	2	0	0	0	0.43207	1	24236	24236		22.736	0	1	850850	+		29074	27517	20797	20963	28464	28464					0.005036361210159157
LDRTIADRRQ	10	Unmodified	_LDRTIADRRQ_					0	0	0		ENSG00000165914|ENST00000328459|TTC7B;nc|ENSG00000165914|Q86TV6-2|TTC7B	ENSG00000165914|ENST00000328459|TTC7B	ENSG00000165914|ENST00000328459|TTC7B	MULTI-MSMS	A375_MHC_IP_R2	2	622.7460327148438	2	622.346917	1242.67928	-0.80308	-0.00049979	0.80401	0.00050037	0.00093367	5.8107E-07	622.3468416925141	128.74	1.7249	128.98	127.94	129.67	0.23947					84	33	3	0	0	0	0.71076	1	50736	50736		8.1555	4.8742	1	34066000			29075	7002	20798	20964	28465	28465					0.06764909917842488
LDRVQQISL	9	Unmodified	_LDRVQQISL_					0	0	0			REV__tr|U7T0H7|U7T0H7_FUSNUAcetaldehydedehydrogenase(Acetylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00826PE=4SV=1	REV__tr|U7T0H7|U7T0H7_FUSNUAcetaldehydedehydrogenase(Acetylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00826PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	536.7105102539062	2	536.31148	1070.60841	-0.54341	-0.00029144	1.4942	0.00080133	0.95075	0.0005099	536.3108292999362	71.368	0.70917	71.368	71.005	71.715	0					22	13	3	0	0	0	0.56537	1	25939	25939		17.113	7.039	1	3201300	+		29076	28679	20799	20965	28466	28466					0.07592816880332975
LDRVRNML	8	Unmodified	_LDRVRNML_					0	0	0			REV__ENSG00000274764|ENST00000436041|PRAMEF27	REV__ENSG00000274764|ENST00000436041|PRAMEF27	MULTI-SECPEP	A375_MHC_IP_R1	1	509.1855773925781	2	508.787118	1015.55968	-0.3188	-0.0001622	-1.6494	-0.00083917	-1.9682	-0.0010014	508.7859254946816	62.833	1.1269	62.833	62.3	63.427	0					35	21	3	0	0	0	0.90775	1	22664	22664		26.884	3.7352	1	5598800	+		29077	22520	20800	20966	28467	28467					0.05252625039599934
LDRVRRKYKL	10	Unmodified	_LDRVRRKYKL_					0	0	0			REV__ENSG00000204560|ENST00000376442|DHX16	REV__ENSG00000204560|ENST00000376442|DHX16	MULTI-SECPEP	A375_MHC_IP_R2	2	674.54638671875	2	673.922595	1345.83064	-0.67852	-0.00045727	1.8245	0.0012295	1.1459	0.00077228	674.4253344908544	98.517	0.25462	99.276	99.047	99.301	0.75977					6	4	2	0	0	0	0.94516	1	37345	37345		1.4819	0.15237	1	1574500	+		29078	22524	20801	20967	28468	28468					0.1715551601637344
LDRYHWVNTHR	11	Unmodified	_LDRYHWVNTHR_					0	0	0		ENSG00000137707|ENST00000692032|BTG4	ENSG00000137707|ENST00000692032|BTG4	ENSG00000137707|ENST00000692032|BTG4	MSMS	A375_MHC_IP_R2	2	499.4851989746094	3	499.588369	1495.74328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.54	1	61.285	60.785	61.785	0.74503								0	0	0	0.16313	1	22926	22926		2.4348	1.9288	1				29079	4906	20802	20968	28469	28469					0.015236900747822801
LDRYRILITKQ	11	Unmodified	_LDRYRILITKQ_					0	0	0		nc|ENSG00000152061|Q5R372-2|RABGAP1L	nc|ENSG00000152061|Q5R372-2|RABGAP1L	nc|ENSG00000152061|Q5R372-2|RABGAP1L	MULTI-MSMS	A375_MHC_IP_R2	2	474.35504150390625	3	473.620788	1417.84053	-0.3679	-0.00017425	-0.78205	-0.00037039	-1.15	-0.00054464	473.62025726054503	143.1	0.70773	143.13	142.64	143.34	0.030731					22	13	3	0	0	0	0.73924	1	55918	55918		0.094841	0	1	1438100			29080	14681	20803	20969	28470	28470					0.14832659231069556
LDRYTQLEL	9	Unmodified	_LDRYTQLEL_					0	0	0			REV__OLFM2|p.R85Q|1|0.13|ENSG00000105088|chr19:9857821-9857821|C/T|missense_variant	REV__OLFM2|p.R85Q|1|0.13|ENSG00000105088|chr19:9857821-9857821|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	384.5875549316406	3	384.208273	1149.60299	-0.44503	-0.00017098	-0.88229	-0.00033898	-1.3273	-0.00050997	384.2076629095116	21.097	0.55734	21.716	21.271	21.828	0.61932					13	10	2	0	0	0	0.7911	1	6452	6452		2.2828	0.3764	1	1013700	+		29081	27642	20804	20970	28471	28471					0.03417093297889551
LDSAQRSLY	9	Unmodified	_LDSAQRSLY_					0	0	0		ENSG00000214029|ENST00000537226|ZNF891	ENSG00000214029|ENST00000537226|ZNF891	ENSG00000214029|ENST00000537226|ZNF891	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1945190429688	2	526.772188	1051.52982	-0.59999	-0.00031606	4.0945	0.0021569	3.4945	0.0018408	526.7745472856551	54.938	0.71374	55.689	55.37	56.084	0.75075					16	13	2	0	0	0	0.46045	1	20793	20793		29.082	11.969	1	1256400			29082	9600	20805	20971	28472	28472					0.006119645752505676
LDSCGAYCF	9	Unmodified	_LDSCGAYCF_					0	0	0			REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	MSMS	A375_MHC_IP_R2	2	489.674072265625	2	489.688421	977.362289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.195	1	80.94	80.44	81.44	0.74474								0	0	0	0.15486	1	30445	30445		11.64	2.2929	1		+		29083	27347	20806	20972	28473	28473					-0.12729762285380275
LDSCRLFIVVP	11	Unmodified	_LDSCRLFIVVP_					0	0	0		ENST00000395290.6_1_11:47490324-47490525:-|nuORF	ENST00000395290.6_1_11:47490324-47490525:-|nuORF	ENST00000395290.6_1_11:47490324-47490525:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	631.984619140625	2	631.352291	1260.69003	-1.0188	-0.00064324	-0.92353	-0.00058307	-1.9424	-0.0012263	631.854954880854	65.865	0.20378	66.603	66.425	66.629	0.73811					5	3	2	0	0	0	0.99227	1	24905	24905		2.9952	0	1	491160			29084	11469	20807	20973	28474	28474					0.0701117624789731
LDSDDSVPHA	10	Unmodified	_LDSDDSVPHA_					0	0	0			REV__ENSG00000102195|ENST00000218316|GPR50	REV__ENSG00000102195|ENST00000218316|GPR50	MULTI-MSMS	A375_MHC_IP_R1	1	528.689453125	2	528.235635	1054.45672	-0.56307	-0.00029744	-0.37496	-0.00019807	-0.93804	-0.0004955	528.2353339362409	61.05	0.66193	61.05	60.669	61.331	0					23	12	3	0	0	0	0.62155	1	21882	21882		19.257	1.1106	1	4401200	+		29085	17210	20808	20974	28475	28475					-0.06833208938041935
LDSEALLTL	9	Unmodified	_LDSEALLTL_					0	0	0		ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	MULTI-SECPEP	A375_MHC_IP_R1	1	974.0126342773438	1	974.540454	973.533177	-0.017595	-1.7147E-05	-1.0839	-0.0010563	-1.1015	-0.0010734	974.5392454876577	125.06	0.35129	125.06	124.8	125.15	0					12	6	3	0	0	0	0.030624	1	47401	47401		100.37	7.5494	1	55468000			29086	5307	20809	20975	28476	28476					0.04535214629231632
LDSEMCKDY	9	Unmodified	_LDSEMCKDY_					0	0	0		ENSG00000133710|ENST00000256084|SPINK5;nc|ENSG00000133710|Q9NQ38-3|SPINK5;SPINK5|p.S987F|1|0.24|ENSG00000133710|chr5:148127075-148127075|C/T|missense_variant	ENSG00000133710|ENST00000256084|SPINK5	ENSG00000133710|ENST00000256084|SPINK5	MULTI-SECPEP	A375_MHC_IP_R2	2	552.0942993164062	2	552.222825	1102.4311	-1.0837	-0.00059842	-0.19235	-0.00010622	-1.276	-0.00070464	552.2225974919364	38.856	0.50959	39.631	39.25	39.76	0.77451					13	9	2	0	0	0	0.73363	1	14238	14238		6.7232	0	1	1599000			29087	4526	20810	20976	28477	28477					-0.11602142776337132
LDSFRQIEY	9	Unmodified	_LDSFRQIEY_					0	0	0			REV__CYP2B6|p.P364L|1|0.26|ENSG00000197408|chr19:41012424-41012424|C/T|missense_variant	REV__CYP2B6|p.P364L|1|0.26|ENSG00000197408|chr19:41012424-41012424|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	585.74267578125	2	585.793121	1169.57169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.616	1	58.365	57.865	58.865	0.74894								0	0	0	0.15069	1	21788	21788		20.454	1.1966	1		+		29088	15950	20811	20977	28478	28478					-0.00631479736239271
LDSHHEAP	8	Unmodified	_LDSHHEAP_					0	0	0		ENST00000585814.1_1_19:3573615-3573789:-|nuORF	ENST00000585814.1_1_19:3573615-3573789:-|nuORF	ENST00000585814.1_1_19:3573615-3573789:-|nuORF	MSMS	A375_MHC_IP_R2	2	453.1651916503906	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.06	1	143.09	142.59	143.59	0.030731								0	0	0	0.16876	1	55919	55919		8.5933	2.8329	1				29089	13722	20812	20978	28479	28479					-0.05213122210193433
LDSHLFYKRY	10	Unmodified	_LDSHLFYKRY_					0	0	0			REV__tr|U7SV25|U7SV25_FUSNUBiotinbiosynthesisproteinBioCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01102PE=4SV=1	REV__tr|U7SV25|U7SV25_FUSNUBiotinbiosynthesisproteinBioCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01102PE=4SV=1	MSMS	A375_MHC_IP_R1	1	671.374267578125	2	671.351137	1340.68772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.215	1	99.215	98.715	99.715	0								0	0	0	0.15332	1	36447	36447		10.074	1.3285	1		+		29090	28579	20813	20979	28480	28480					0.031004638344711566
LDSHVECNV	9	Unmodified	_LDSHVECNV_					0	0	0		ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	MSMS	A375_MHC_IP_R1	1	508.21319580078125	2	508.229299	1014.44404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.47	1	79.47	78.97	79.97	0								0	0	0	0.15486	1	29009	29009		12.532	0	1				29091	4798	20814	20980	28481	28481					-0.06259943601924078
LDSKLFRSYS	10	Unmodified	_LDSKLFRSYS_					0	0	0			REV__nc|ENSG00000148908|O43665-2|RGS10	REV__nc|ENSG00000148908|O43665-2|RGS10	MULTI-SECPEP	A375_MHC_IP_R1	1	406.2835693359375	3	405.883789	1214.62954	-0.37013	-0.00015023	0.66449	0.0002697	0.29436	0.00011948	405.8839445600123	60.711	0.40795	60.711	60.514	60.922	0					13	7	2	0	0	0	0.93405	1	21887	21887		5.0475	0	1	1739100	+		29092	19652	20815	20981	28482	28482					0.03080782189204001
LDSKLFRSYS	10	Unmodified	_LDSKLFRSYS_					0	0	0			REV__nc|ENSG00000148908|O43665-2|RGS10	REV__nc|ENSG00000148908|O43665-2|RGS10	MULTI-MATCH	A375_MHC_IP_R2	2		3	405.883789	1214.62954	-0.3505	-0.00014226	-0.25486	-0.00010344	-0.60536	-0.00024571	405.8837412679138	59.78	0.40467	60.527	60.299	60.704	0.74714	-0.092121	-0.00076136	NaN	5.0475	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1161900	+		29093	19652	20815	20981							0.03080782189204001
LDSKTKTSKK	10	Unmodified	_LDSKTKTSKK_					0	0	0		nc|ENSG00000176601|Q56UN5-3|MAP3K19;ENSG00000176601|ENST00000392915|MAP3K19	nc|ENSG00000176601|Q56UN5-3|MAP3K19	nc|ENSG00000176601|Q56UN5-3|MAP3K19	MULTI-SECPEP	A375_MHC_IP_R1	1	378.64752197265625	3	379.227556	1134.66084	0.11925	4.5223E-05	1.2178	0.00046183	1.3371	0.00050705	379.56250142758773	37.985	0.20494	37.985	37.862	38.067	0					6	3	2	0	0	0	0.94363	1	12837	12837		1.4551	0.59074	1	761130			29094	8027	20816	20982	28483	28483					0.0988935522329939
LDSLEELYCY	10	Unmodified	_LDSLEELYCY_					0	0	0		nc|ENSG00000105185|O14737-2|PDCD5	nc|ENSG00000105185|O14737-2|PDCD5	nc|ENSG00000105185|O14737-2|PDCD5	MSMS	A375_MHC_IP_R2	2	624.6778564453125	2	624.278654	1246.54276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.78	1	77.52	77.02	78.02	0.74052								0	0	0	0.15332	1	29153	29153		10.074	3.3508	1				29095	14523	20817	20983	28484	28484					-0.07065385147529923
LDSLEWAW	8	Unmodified	_LDSLEWAW_					0	0	0			REV__nc|ENSG00000185176|A6NM10|AQP12B	REV__nc|ENSG00000185176|A6NM10|AQP12B	MULTI-SECPEP	A375_MHC_IP_R2	2	510.45111083984375	2	510.245275	1018.476	-1.2212	-0.00062309	0.21001	0.00010716	-1.0112	-0.00051594	510.24543658101334	53.665	1.1732	54.417	54.097	55.27	0.75105					29	22	2	0	0	0	0.93416	1	20347	20347		20.871	0	1	2974600	+		29096	21848	20818	20984	28485	28485					-0.03250207856478937
LDSLIAWW	8	Unmodified	_LDSLIAWW_					0	0	0		ENST00000434116.6_1_15:65916409-65944223:+|nuORF;nc|ENSG00000074621|O60721-3|SLC24A1;nc|ENSG00000074621|O60721-2|SLC24A1;ENSG00000074621|ENST00000261892|SLC24A1	ENST00000434116.6_1_15:65916409-65944223:+|nuORF	ENST00000434116.6_1_15:65916409-65944223:+|nuORF	MSMS	A375_MHC_IP_R1	1	502.1821594238281	2	502.26601	1002.51747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.824	1	42.824	42.324	43.324	0								0	0	0	0.16876	1	14856	14856		28.173	1.832	1				29097	1587	20819	20985	28486	28486					0.016309729028421316
LDSLWPGFF	9	Unmodified	_LDSLWPGFF_					0	0	0		OGDH|p.P588L|1|0.36|ENSG00000105953|chr7:44696119-44696119|C/T|missense_variant	OGDH|p.P588L|1|0.36|ENSG00000105953|chr7:44696119-44696119|C/T|missense_variant	OGDH|p.P588L|1|0.36|ENSG00000105953|chr7:44696119-44696119|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	541.1952514648438	2	541.271293	1080.52803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.237	1	57.237	56.737	57.737	0								0	0	0	0.073358	1	20527	20527		48.346	4.4876	1				29098	15046	20820	20986	28487	28487					-0.00901044442730381
LDSMSFPVCV	10	Unmodified	_LDSMSFPVCV_					0	0	0			REV__chr1:212424735-212442565|212|149.15|0.77|7.6|+|2|TE_info:PRIMA41-int,PRIMA41-int_dup13,ERV1,LTR,donor,+,212422944,212424735|None,NENF|25	REV__chr1:212424735-212442565|212|149.15|0.77|7.6|+|2|TE_info:PRIMA41-int,PRIMA41-int_dup13,ERV1,LTR,donor,+,212422944,212424735|None,NENF|25	MULTI-MSMS	A375_MHC_IP_R2	2	549.2268676757812	2	549.253928	1096.4933	-1.1265	-0.00061872	0.27219	0.0001495	-0.85428	-0.00046922	549.2538333177516	38.586	1.0196	39.361	38.997	40.016	0.77451					43	19	4	0	0	0	0.6806	1	14321	14321		14.838	2.3067	1	9968100	+		29099	15673	20821	20987	28488	28488					-0.051083716373341304
LDSPKMQVL	9	Unmodified	_LDSPKMQVL_					0	0	0			REV__ENSG00000119906|ENST00000238961|SLF2	REV__ENSG00000119906|ENST00000238961|SLF2	MSMS	A375_MHC_IP_R1	1	515.7132568359375	2	515.78371	1029.55287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.18	1	105.18	104.68	105.68	0								0	0	0	0.13805	1	38615	38615		30.225	5.5509	1		+		29100	18100	20822	20988	28489	28489					0.039272673683626635
LDSPSYVLY	9	Unmodified	_LDSPSYVLY_					0	0	0		nc|ENSG00000168522|P49354-2|FNTA;ENSG00000168522|ENST00000302279|FNTA;ENST00000524546.5_1_8:42911603-42924800:+|nuORF	nc|ENSG00000168522|P49354-2|FNTA	nc|ENSG00000168522|P49354-2|FNTA	MSMS	A375_MHC_IP_R1	1	528.674072265625	2	528.76604	1055.51753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.333	1	97.333	96.833	97.833	0								0	0	0	0.14359	1	35761	35761		28.487	5.3384	1				29101	7315	20823	20989	28490	28490					-0.00801071887804028
LDSPWHRFRRF	11	Unmodified	_LDSPWHRFRRF_					0	0	0		ENSG00000167685|ENST00000337080|ZNF444;nc|ENSG00000167685|Q8N0Y2-2|ZNF444;ENST00000587195.5_1_19:56657742-56667135:+|nuORF	ENSG00000167685|ENST00000337080|ZNF444	ENSG00000167685|ENST00000337080|ZNF444	MULTI-SECPEP	A375_MHC_IP_R2	2	506.14141845703125	3	506.26886	1515.78475	-0.81064	-0.0004104	1.3102	0.00066333	0.4996	0.00025293	506.26968177934003	40.482	0.55856	41.256	40.879	41.438	0.77451					17	10	3	0	0	0	0.99883	1	14934	14934		4.7159	4.3492	1	1918100			29102	7211	20824	20990	28491	28491					0.04748870834077934
LDSQNNFSQY	10	Unmodified	_LDSQNNFSQY_					0	0	0			REV__ENSG00000198056|ENST00000338193|PRIM1	REV__ENSG00000198056|ENST00000338193|PRIM1	MULTI-MSMS	A375_MHC_IP_R1	1	608.6670532226562	2	608.267467	1214.52038	-0.039301	-2.3905E-05	-0.61551	-0.0003744	-0.65481	-0.0003983	608.2669715537388	48.096	0.60677	48.096	47.819	48.426	0					21	11	2	0	0	0	0.50967	1	16956	16956		27.629	12.791	1	6072800	+		29103	22342	20825	20991	28492	28492					-0.07829848500932712
LDSQNNFSQY	10	Unmodified	_LDSQNNFSQY_					0	0	0			REV__ENSG00000198056|ENST00000338193|PRIM1	REV__ENSG00000198056|ENST00000338193|PRIM1	MULTI-MSMS	A375_MHC_IP_R2	2	608.6669311523438	2	608.267467	1214.52038	-0.27001	-0.00016424	-0.32254	-0.00019619	-0.59255	-0.00036043	608.2671458212305	47.482	0.66407	48.243	47.867	48.532	0.76127					25	12	3	0	0	0	0.6502	1	17814	17814		17.113	1.2657	1	6127200	+		29104	22342	20825	20991	28493	28493					-0.07829848500932712
LDSRTGVNV	9	Unmodified	_LDSRTGVNV_					0	0	0		ENST00000265087.8_1_5:172744370-172744454:-|nuORF	ENST00000265087.8_1_5:172744370-172744454:-|nuORF	ENST00000265087.8_1_5:172744370-172744454:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	481.1589050292969	2	480.759081	959.503609	-0.41915	-0.00020151	0.26249	0.0001262	-0.15666	-7.5316E-05	480.75926633068354	34.682	0.30278	34.682	34.456	34.759	0					9	5	2	0	0	0	0.12771	1	11469	11469		45.7	11.298	1	3024600			29105	10345	20826	20992	28494	28494					0.022236954037680334
LDSRTGVNV	9	Unmodified	_LDSRTGVNV_					0	0	0		ENST00000265087.8_1_5:172744370-172744454:-|nuORF	ENST00000265087.8_1_5:172744370-172744454:-|nuORF	ENST00000265087.8_1_5:172744370-172744454:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	481.1587219238281	2	480.759081	959.503609	-1.0308	-0.00049558	0.82284	0.00039559	-0.20798	-9.9989E-05	480.7594580826108	33.976	0.30309	34.728	34.5	34.803	0.75225					9	5	2	0	0	0	0.57304	1	12227	12227		23.79	17.584	1	2523400			29106	10345	20826	20992	28495	28495					0.022236954037680334
LDSRVLNAV	9	Unmodified	_LDSRVLNAV_					0	0	0		ENSG00000148411|ENST00000277554|NACC2	ENSG00000148411|ENST00000277554|NACC2	ENSG00000148411|ENST00000277554|NACC2	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1786193847656	2	493.785099	985.555644	-0.49176	-0.00024282	-0.69946	-0.00034538	-1.1912	-0.0005882	493.78476367406506	64.897	0.81439	65.635	64.952	65.766	0.73811					38	15	3	0	0	0	0.05755	1	24650	24650		61.357	0	1	11748000			29107	5741	20827	20993	28496	28496					0.06228858817519267
LDSSFDHDK	9	Unmodified	_LDSSFDHDK_					0	0	0			REV__ENSG00000175946|ENST00000684634|KLHL38	REV__ENSG00000175946|ENST00000684634|KLHL38	MULTI-SECPEP	A375_MHC_IP_R2	2	531.649169921875	2	532.238178	1062.4618	-0.98651	-0.00052506	-1.0429	-0.00055507	-2.0294	-0.0010801	532.7387916034643	71.734	0.70765	72.468	72.264	72.971	0.7342					24	13	3	0	0	0	0.76827	1	27233	27233		10.824	1.4765	1	1757800	+		29108	21377	20828	20994	28497	28497					-0.06692905075442468
LDSSFPNTPS	10	Unmodified	_LDSSFPNTPS_					0	0	0			REV__nc|ENSG00000133961|P49757-9|NUMB	REV__nc|ENSG00000133961|P49757-9|NUMB	MSMS	A375_MHC_IP_R1	1	532.6982421875	2	532.748379	1063.4822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.696	1	25.696	25.196	26.196	0								0	0	0	0.14983	1	7542	7542		18.146	1.0335	1		+		29109	18743	20829	20995	28498	28498					-0.046997344155897736
LDSSGLLEV	9	Unmodified	_LDSSGLLEV_					0	0	0			REV__nc|ENSG00000143297|Q96RD9-2|FCRL5	REV__nc|ENSG00000143297|Q96RD9-2|FCRL5	MULTI-MSMS	A375_MHC_IP_R1	1	466.65826416015625	2	466.75039	931.486227	-0.21823	-0.00010186	-0.13613	-6.3537E-05	-0.35436	-0.0001654	466.75028788101866	101.09	0.81085	101.09	100.69	101.5	0					36	15	3	0	0	0	0.2264	1	37294	37294		36.044	0	1	5796900	+		29110	25253	20830	20996	28499	28499					0.01774355078100598
LDSSGLLEV	9	Unmodified	_LDSSGLLEV_					0	0	0			REV__nc|ENSG00000143297|Q96RD9-2|FCRL5	REV__nc|ENSG00000143297|Q96RD9-2|FCRL5	MSMS	A375_MHC_IP_R1	1	466.6694030761719	2	466.75039	931.486227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.72	1	101.72	101.22	102.22	0								0	0	0	0.11948	1	37380	37380		36.044	7.5574	1		+		29111	25253	20830	20996	28500	28500					0.01774355078100598
LDSSITLIYFF	11	Unmodified	_LDSSITLIYFF_					0	0	0			REV__HHATL|p.P274S|1|0.32|ENSG00000010282|chr3:42697553-42697553|G/A|missense_variant	REV__HHATL|p.P274S|1|0.32|ENSG00000010282|chr3:42697553-42697553|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	659.8828735351562	2	659.850104	1317.68566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.37	1	121.37	120.87	121.87	0								0	0	0	0.15377	1	45067	45067		18.146	0	1		+		29112	26741	20831	20997	28501	28501					0.03951990305995423
LDSVIFVTEL	10	Unmodified	_LDSVIFVTEL_					0	0	0			REV__tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1	REV__tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	568.7157592773438	2	568.315897	1134.61724	-0.096377	-5.4773E-05	0.2962	0.00016834	0.19982	0.00011356	568.3160135868613	107.64	0.56207	107.64	107.39	107.95	0					23	10	3	0	0	0	0.23156	1	39491	39491		46.021	6.0636	1	3058400	+		29113	28655	20832	20998	28502	28502					0.05531745726148074
LDSVIFVTEL	10	Unmodified	_LDSVIFVTEL_					0	0	0			REV__tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1	REV__tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	568.315897	1134.61724	-0.096377	-5.4773E-05	0.2962	0.00016834	0.19982	0.00011356	568.3160135868613	107.64	0.56207	107.64	107.39	107.95	0	0.10388	0.0001612	NaN	46.021	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3058400	+		29114	28655	20832	20998							0.05531745726148074
LDSVLSAAAGP	11	Unmodified	_LDSVLSAAAGP_					0	0	0		ENST00000167106.8_2_14:77228724-77228868:+|nuORF	ENST00000167106.8_2_14:77228724-77228868:+|nuORF	ENST00000167106.8_2_14:77228724-77228868:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.1690979003906	2	500.769114	999.523675	-0.12833	-6.4265E-05	0.42199	0.00021132	0.29365	0.00014705	500.76927573367874	49.701	0.40758	49.701	49.54	49.947	0					12	7	2	0	0	0	0.54446	1	17625	17625		27.629	7.2143	1	1461800			29115	10067	20833	20999	28503	28503					0.023894463437159175
LDSWACAVL	9	Unmodified	_LDSWACAVL_					0	0	0		TMEM88|p.C24S|1|0.19|ENSG00000167874|chr17:7855145-7855145|G/C|missense_variant	TMEM88|p.C24S|1|0.19|ENSG00000167874|chr17:7855145-7855145|G/C|missense_variant	TMEM88|p.C24S|1|0.19|ENSG00000167874|chr17:7855145-7855145|G/C|missense_variant	MSMS	A375_MHC_IP_R1	1	489.1763916015625	2	489.241678	976.468803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.744	1	47.744	47.244	48.244	0								0	0	0	0.15131	1	16809	16809		19.439	2.4967	1				29116	29366	20834	21000	28504	28504					-0.02037263728561811
LDSWFMSQHWY	11	Unmodified	_LDSWFMSQHWY_					0	0	0			REV__nc|ENSG00000156709|O95831-5|AIFM1	REV__nc|ENSG00000156709|O95831-5|AIFM1	MSMS	A375_MHC_IP_R2	2	500.6238098144531	3	500.551933	1498.63397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.845	1	58.594	58.094	59.094	0.74894								0	0	0	0.16269	1	21877	21877		4.7159	3.3863	1		+		29117	19994	20835	21001	28505	28505					-0.09540076659527585
LDSWFMSQHWY	11	Unmodified	_LDSWFMSQHWY_					0	0	0			REV__nc|ENSG00000156709|O95831-5|AIFM1	REV__nc|ENSG00000156709|O95831-5|AIFM1	MSMS	A375_MHC_IP_R2	2	500.4482116699219	3	500.551933	1498.63397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.232	1	58.981	58.481	59.481	0.74894								0	0	0	0.16336	1	22028	22028		1.2148	0.20126	1		+		29118	19994	20835	21001	28506	28506					-0.09540076659527585
LDSYVRLSQ	9	Unmodified	_LDSYVRLSQ_					0	0	0			REV__nc|ENSG00000185090|Q5VSG8-3|MANEAL	REV__nc|ENSG00000185090|Q5VSG8-3|MANEAL	MULTI-MSMS	A375_MHC_IP_R2	2	541.3504638671875	2	540.787838	1079.56112	-1.0707	-0.00057902	-0.15833	-8.562E-05	-1.229	-0.00066464	540.7877976846036	54.392	1.0666	55.143	54.814	55.881	0.75075					55	20	4	0	0	0	0.34064	1	20738	20738		27.629	6.0918	1	56778000	+		29119	21867	20836	21002	28507	28507					0.024525376093379236
LDTAECDEW	9	Unmodified	_LDTAECDEW_					0	0	0			REV__ENST00000602069.5_1_19:41284205-41289930:+|nuORF	REV__ENST00000602069.5_1_19:41284205-41289930:+|nuORF	MSMS	A375_MHC_IP_R2	2	541.1719970703125	2	541.210772	1080.40699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.652	1	60.399	59.899	60.899	0.74714								0	0	0	0.15486	1	22574	22574		12.532	3.1484	1		+		29120	26507	20837	21003	28508	28508					-0.12999659938350305
LDTAGFHAAV	10	Unmodified	_LDTAGFHAAV_					0	0	0			REV__ENSG00000142252|ENST00000270257|GEMIN7	REV__ENSG00000142252|ENST00000270257|GEMIN7	MULTI-MSMS	A375_MHC_IP_R1	1	501.17645263671875	2	501.256174	1000.49779	-0.26127	-0.00013096	0.045754	2.2934E-05	-0.21552	-0.00010803	501.2564731376032	56.229	0.9143	56.229	55.991	56.905	0					23	17	2	0	0	0	0.66712	1	20259	20259		15.847	0.078963	1	1870900	+		29121	19303	20838	21004	28509	28509					-0.002434031079133092
LDTAGVMPV	9	Unmodified	_LDTAGVMPV_					0	0	0			REV__ENSG00000169992|ENST00000302926|NLGN2	REV__ENSG00000169992|ENST00000302926|NLGN2	MSMS	A375_MHC_IP_R1	1	451.6712341308594	2	451.736228	901.457904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.969	1	57.969	57.469	58.469	0								0	0	0	0.13805	1	20813	20813		30.225	1.738	1		+		29122	20960	20839	21005	28510	28510					0.0032333389716541205
LDTAGVMPV	9	Unmodified	_LDTAGVMPV_					0	0	0			REV__ENSG00000169992|ENST00000302926|NLGN2	REV__ENSG00000169992|ENST00000302926|NLGN2	MSMS	A375_MHC_IP_R2	2	451.67083740234375	2	451.736228	901.457904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.967	1	57.717	57.217	58.217	0.75015								0	0	0	0.11948	1	21537	21537		36.044	0	1		+		29123	20960	20839	21005	28511	28511					0.0032333389716541205
LDTARAAARL	10	Unmodified	_LDTARAAARL_					0	0	0			REV__ENST00000544451.2_1_8:52746202-52811685:-|nuORF	REV__ENST00000544451.2_1_8:52746202-52811685:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	529.646728515625	2	529.309272	1056.60399	-0.69073	-0.00036561	-3.1919	-0.0016895	-3.8826	-0.0020551	529.3076486312232	66.478	0.30638	67.214	67.035	67.342	0.73631					7	5	2	0	0	0	0.88918	1	25170	25170		13.042	9.7612	1	693780	+		29124	25986	20840	21006	28512	28512					0.07795352457424087
LDTDHDLLI	9	Unmodified	_LDTDHDLLI_					0	0	0		ENST00000468169.6_1_X:299440-306311:-|nuORF;ENSG00000167393|ENST00000390665|PPP2R3B;ENST00000477110.6_1_X:302544-308028:-|nuORF;ENST00000445792.7_1_X:305849-322301:-|nuORF	ENST00000468169.6_1_X:299440-306311:-|nuORF	ENST00000468169.6_1_X:299440-306311:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	528.1741943359375	2	527.774396	1053.53424	-0.51387	-0.00027121	1.2492	0.00065929	0.73531	0.00038808	527.7749554130855	130.36	0.30447	130.58	130.4	130.7	0.2142					12	5	3	0	0	0	0.3607	1	51241	51241		34.102	5.6156	1	97091000			29125	7181	20841	21007	28513	28513					0.00961428998152769
LDTEMMMSY	9	Unmodified	_LDTEMMMSY_					0	0	0			REV__ENSG00000182968|ENST00000330949|SOX1	REV__ENSG00000182968|ENST00000330949|SOX1	MSMS	A375_MHC_IP_R1	1	560.67431640625	2	560.721603	1119.42865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.49	1	42.49	41.99	42.99	0								0	0	0	0.15486	1	14731	14731		7.9102	0.62092	1		+		29126	21722	20842	21008	28514	28514					-0.1262831450565045
LDTEQQNLY	9	Unmodified	_LDTEQQNLY_					0	0	0		ENSG00000183850|ENST00000597761|ZNF730	ENSG00000183850|ENST00000597761|ZNF730	ENSG00000183850|ENST00000597761|ZNF730	MULTI-MSMS	A375_MHC_IP_R2	2	562.6797485351562	2	562.266936	1122.51932	-0.79434	-0.00044663	-0.3935	-0.00022125	-1.1878	-0.00066788	562.2665595271062	51.613	0.65975	52.365	52.017	52.677	0.75225					26	12	4	0	0	0	0.29981	1	19466	19466		30.637	6.8468	1	4541600			29127	8536	20843	21009	28515	28515					-0.03704062869860536
LDTFSRAGLQ	10	Unmodified	_LDTFSRAGLQ_					0	0	0		ENST00000372994.1_1_9:130925924-130926173:+|nuORF	ENST00000372994.1_1_9:130925924-130926173:+|nuORF	ENST00000372994.1_1_9:130925924-130926173:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	554.153076171875	2	554.293288	1106.57202	-0.79216	-0.00043909	-0.12748	-7.066E-05	-0.91964	-0.00050975	554.2931770314888	31.742	0.30415	32.478	32.35	32.654	0.73691					8	5	2	0	0	0	0.55307	1	11257	11257		36.506	0	1	2114900			29128	11218	20844	21010	28516	28516					0.0229993998361806
LDTGLKVAI	9	Unmodified	_LDTGLKVAI_					0	0	0			REV__nc|ENSG00000147162|O15294-2|OGT	REV__nc|ENSG00000147162|O15294-2|OGT	MULTI-MSMS	A375_MHC_IP_R2	2	465.6868591308594	2	465.286943	928.559333	-0.96269	-0.00044793	0.65385	0.00030423	-0.30884	-0.0001437	465.28711624501796	60.219	0.45869	60.965	60.702	61.161	0.7457					12	8	2	0	0	0	0.14922	1	22806	22806		41.84	1.8823	1	2419600	+		29129	27279	20845	21011	28517	28517					0.09219528591370363
LDTGLKVAI	9	Unmodified	_LDTGLKVAI_					0	0	0			REV__nc|ENSG00000147162|O15294-2|OGT	REV__nc|ENSG00000147162|O15294-2|OGT	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	465.286943	928.559333	-0.96269	-0.00044793	0.65385	0.00030423	-0.30884	-0.0001437	465.28711624501796	60.219	0.45869	60.965	60.702	61.161	0.7457	-0.10287	0.00021872	NaN	41.84	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2419600	+		29130	27279	20845	21011							0.09219528591370363
LDTITGQVAL	10	Unmodified	_LDTITGQVAL_					0	0	0			REV__ENST00000406829.2_2_7:7812042-7917166:+|nuORF	REV__ENST00000406829.2_2_7:7812042-7917166:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	516.1921997070312	2	515.792589	1029.57063	-0.84989	-0.00043837	0.33204	0.00017126	-0.51785	-0.0002671	515.7925900467799	30.643	0.45536	30.643	30.402	30.857	0					14	8	2	0	0	0	0.39599	1	9775	9775		34.402	3.1334	1	2133600	+		29131	22685	20846	21012	28518	28518					0.057023058948516336
LDTKLYTPMY	10	Unmodified	_LDTKLYTPMY_					0	0	0		OR2B6|p.H56Y|1|0.56|ENSG00000124657|chr6:27957406-27957406|C/T|missense_variant	OR2B6|p.H56Y|1|0.56|ENSG00000124657|chr6:27957406-27957406|C/T|missense_variant	OR2B6|p.H56Y|1|0.56|ENSG00000124657|chr6:27957406-27957406|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	622.7171630859375	2	622.815207	1243.61586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.613	1	91.348	90.848	91.848	0.7345								0	0	0	0.15353	1	34477	34477		9.3831	0.63772	1				29132	15069	20847	21013	28519	28519					0.0037978836573984154
LDTKWYQW	8	Unmodified	_LDTKWYQW_					0	0	0		ENSG00000136943|ENST00000259470|CTSV;CTSV|p.Q23R|1|0.1|ENSG00000136943|chr9:97037976-97037976|T/C|missense_variant	ENSG00000136943|ENST00000259470|CTSV	ENSG00000136943|ENST00000259470|CTSV	MSMS	A375_MHC_IP_R1	1	570.2022094726562	2	570.279649	1138.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.476	1	55.476	54.976	55.976	0								0	0	0	0.16876	1	19841	19841		18.135	2.2878	1				29133	4849	20848	21014	28520	28520					-0.018985435567628883
LDTLLIGCCCW	11	Unmodified	_LDTLLIGCCCW_					0	0	0			REV__ENST00000257572.5_1_12:117298148-117298622:-|nuORF	REV__ENST00000257572.5_1_12:117298148-117298622:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	620.6793823242188	2	620.282163	1238.54977	-0.9503	-0.00058945	-1.5971	-0.00099068	-2.5474	-0.0015801	620.2797556297835	72.029	0.45435	72.763	72.567	73.021	0.73421					23	8	4	0	0	0	0.66658	1	27348	27348		18.146	0	1	3740100	+		29134	23158	20849	21015	28521	28521					-0.05996067072328515
LDTLMWIY	8	Unmodified	_LDTLMWIY_					0	0	0		ENSG00000205710|ENST00000381365|C17orf107	ENSG00000205710|ENST00000381365|C17orf107	ENSG00000205710|ENST00000381365|C17orf107	MULTI-MSMS	A375_MHC_IP_R1	1	528.1651611328125	2	527.767529	1053.5205	-0.80609	-0.00042543	-2.5471	-0.0013443	-3.3532	-0.0017697	527.7659888230232	67.095	0.71557	67.095	66.734	67.449	0					25	13	3	0	0	0	0.68907	1	24330	24330		38.151	3.7495	1	2753700			29135	9523	20850	21016	28522	28522					-0.00411520034640489
LDTNWFIAL	9	Unmodified	_LDTNWFIAL_					0	0	0			REV__ENST00000435296.2_1_7:128097531-128097585:+|nuORF	REV__ENST00000435296.2_1_7:128097531-128097585:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	546.2283325195312	2	546.78985	1091.56515	-0.93221	-0.00050972	0.56525	0.00030907	-0.36696	-0.00020065	546.7904566940391	71.047	0.30368	71.781	71.656	71.959	0.73421					8	5	2	0	0	0	0.55359	1	26925	26925		6.7232	0	1	1501100	+		29136	24747	20851	21017	28523	28523					0.02302627103017585
LDTPLMIY	8	Unmodified	_LDTPLMIY_					0	0	0			REV__ENST00000391440.2_1_X:134155474-134155804:-|nuORF	REV__ENST00000391440.2_1_X:134155474-134155804:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	483.6528015136719	2	483.254254	964.493955	-1.1622	-0.00056165	3.1854	0.0015394	2.0232	0.0009777	483.2554086147636	53.353	0.71495	54.104	53.638	54.353	0.75105					20	13	3	0	0	0	0.64599	1	20138	20138		42.968	3.0183	1	3108200	+		29137	24262	20852	21018	28524	28524					0.010287910740203188
LDTQWNGL	8	Unmodified	_LDTQWNGL_					0	0	0			REV__LHFPL4|p.R200W|1|0.45|ENSG00000156959|chr3:9506012-9506012|G/A|missense_variant	REV__LHFPL4|p.R200W|1|0.45|ENSG00000156959|chr3:9506012-9506012|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	474.00848388671875	2	473.735074	945.455596	-0.49996	-0.00023685	-0.39496	-0.00018711	-0.89492	-0.00042396	473.73487981123316	42.216	0.25598	42.988	42.86	43.116	0.7724					5	4	2	0	0	0	0.972	1	15651	15651		4.756	0	1	853020	+		29138	26927	20853	21019	28525	28525					-0.019313785162921704
LDTRLLYPV	9	Unmodified	_LDTRLLYPV_					0	0	0		ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	MULTI-SECPEP	A375_MHC_IP_R1	1	544.6552734375	2	545.318774	1088.623	-0.61986	-0.00033802	-0.11548	-6.2974E-05	-0.73534	-0.000401	545.3187732608957	87.289	0.61066	87.289	87.034	87.644	0					22	11	3	0	0	0	0.5212	1	32060	32060		20.415	0	1	1864400			29139	2622	20854	21020	28526	28526					0.08222889028479585
LDTRPQAALY	10	Unmodified	_LDTRPQAALY_					0	0	0			REV__ENSG00000165572|ENST00000379485|KBTBD6	REV__ENSG00000165572|ENST00000379485|KBTBD6	MULTI-MSMS	A375_MHC_IP_R2	2	574.8271484375	2	574.308938	1146.60332	-0.22403	-0.00012866	-0.20988	-0.00012054	-0.4339	-0.0002492	574.3088054235839	77.32	0.81041	78.063	77.657	78.468	0.74293					24	15	3	0	0	0	0.66712	1	29221	29221		15.847	3.3156	1	4055500	+		29140	20597	20855	21021	28527	28527					0.03588513017712103
LDTVALSCILY	11	Unmodified	_LDTVALSCILY_					0	0	0			REV__ENSG00000168830|ENST00000305344|HTR1E	REV__ENSG00000168830|ENST00000305344|HTR1E	MULTI-SECPEP	A375_MHC_IP_R1	1	606.2230224609375	2	605.823032	1209.63151	-0.49589	-0.00030042	-0.10838	-6.566E-05	-0.60427	-0.00036608	605.8230597558857	94.79	0.61199	94.79	94.497	95.109	0					22	11	3	0	0	0	0.90584	1	34840	34840		22.736	3.4793	1	2297000	+		29141	20889	20856	21022	28528	28528					0.035080748827795105
LDTVDYQF	8	Unmodified	_LDTVDYQF_					0	0	0			REV__MYBPC3|p.G341D|2|0.29|ENSG00000134571|chr11:47346275-47346275|C/T|missense_variant	REV__MYBPC3|p.G341D|2|0.29|ENSG00000134571|chr11:47346275-47346275|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	501.18743896484375	2	500.73474	999.454927	-0.32986	-0.00016517	0.38831	0.00019444	0.058447	2.9266E-05	500.7346121736804	96.556	0.61012	96.556	96.171	96.781	0					19	11	2	0	0	0	0.75322	1	35449	35449		19.439	1.304	1	1135200	+		29142	27057	20857	21023	28529	28529					-0.044822179560014774
LDTVYEPLH	9	Unmodified	_LDTVYEPLH_					0	0	0			REV__ENST00000519486.5_1_5:168179958-168216668:-|nuORF	REV__ENST00000519486.5_1_5:168179958-168216668:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	362.30078125	3	362.853718	1085.53933	-0.053854	-1.9541E-05	-0.61745	-0.00022404	-0.6713	-0.00024358	362.85349750454816	42.112	0.45927	42.884	42.656	43.116	0.7724					13	8	2	0	0	0	0.77834	1	15667	15667		5.2969	2.5617	1	2969200	+		29143	21811	20858	21024	28530	28530					-2.2671392343909247E-05
LDTWDVEF	8	Unmodified	_LDTWDVEF_					0	0	0			REV__ENST00000543879.6_1_15:35174782-35176793:-|nuORF	REV__ENST00000543879.6_1_15:35174782-35176793:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	511.9884033203125	2	512.73474	1023.45493	-0.91078	-0.00046699	-0.32074	-0.00016446	-1.2315	-0.00063144	512.7340840664	35.932	0.45839	36.696	36.384	36.842	0.76338					14	8	2	0	0	0	0.972	1	12981	12981		5.7604	5.7604	1	1701200	+		29144	25982	20859	21025	28531	28531					-0.05586217955988104
LDTWTEFVEG	10	Unmodified	_LDTWTEFVEG_					0	0	0		ENST00000507059.5_1_5:180043993-180056331:-|nuORF;nc|ENSG00000037280|P35916-3|FLT4;nc|ENSG00000037280|P35916-1|FLT4;ENSG00000037280|ENST00000261937|FLT4	ENST00000507059.5_1_5:180043993-180056331:-|nuORF	ENST00000507059.5_1_5:180043993-180056331:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	598.6121826171875	2	598.777136	1195.53972	-0.33239	-0.00019903	-0.20668	-0.00012375	-0.53907	-0.00032278	598.7772173543988	112.06	1.3274	112.78	112.15	113.48	0.72459					57	25	4	0	0	0	0.91556	1	42426	42426		14.838	8.1151	1	3271000			29145	1145	20860	21026	28532	28532					-0.05022892210035934
LDVAGLLSEI	10	Unmodified	_LDVAGLLSEI_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;ENST00000486515.1_1_1:19401328-19404299:-|nuORF	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	A375_MHC_IP_R2	2	1028.9141845703125	1	1029.58265	1028.57538	0.22832	0.00023507	-0.26957	-0.00027755	-0.041256	-4.2476E-05	1029.582350063101	137.4	0.61009	137.48	137.35	137.96	0.083969					24	11	4	0	0	0	0.93194	1	54038	54038		9.3831	0.63772	1	38084000			29146	4093	20861	21027	28533	28533					0.062231900375991245
LDVAGLLSEI	10	Unmodified	_LDVAGLLSEI_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;ENST00000486515.1_1_1:19401328-19404299:-|nuORF	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MATCH	A375_MHC_IP_R1	1		1	1029.58265	1028.57538	-0.142	-0.0001462	0.20616	0.00021226	0.064167	6.6066E-05	1029.5828047725079	137.51	0.61461	137.51	137.33	137.95	0	0.016253	0.00020769	NaN	9.3831	29	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49762000			29147	4093	20861	21027							0.062231900375991245
LDVAKTRIT	9	Unmodified	_LDVAKTRIT_					0	0	0		ENST00000483224.5_1_3:66354925-66428228:+|nuORF;nc|ENSG00000144741|Q70HW3-2|SLC25A26;ENSG00000144741|ENST00000354883|SLC25A26	ENST00000483224.5_1_3:66354925-66428228:+|nuORF	ENST00000483224.5_1_3:66354925-66428228:+|nuORF	MSMS	A375_MHC_IP_R1	1	508.7158508300781	2	508.808574	1015.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.713	1	40.713	40.213	41.213	0								0	0	0	0.1535	1	14008	14008		15.847	0	1				29148	5512	20862	21028	28534	28534					0.09541718368643615
LDVARQRV	8	Unmodified	_LDVARQRV_					0	0	0			REV__nc|ENSG00000183020|O94973-3|AP2A2	REV__nc|ENSG00000183020|O94973-3|AP2A2	MULTI-MSMS	A375_MHC_IP_R2	2	479.185546875	2	478.785433	955.556313	-0.56684	-0.00027139	0.14813	7.0921E-05	-0.41871	-0.00020047	478.7854563314057	130.39	0.91068	130.61	129.79	130.7	0.2142					20	17	2	0	0	0	0.77488	1	51304	51304		13.508	0	1	5425100	+		29149	21727	20863	21029	28535	28535					0.07675698257230579
LDVAYNKI	8	Unmodified	_LDVAYNKI_					0	0	0			REV__tr|U7SM31|U7SM31_FUSNULipoprotein-releasingsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02063PE=3SV=1	REV__tr|U7SM31|U7SM31_FUSNULipoprotein-releasingsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02063PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	468.6631774902344	2	468.263468	934.512382	0.030562	1.4311E-05	-0.58328	-0.00027313	-0.55272	-0.00025882	468.2631772331212	44.461	0.4096	44.461	44.267	44.676	0					12	7	2	0	0	0	0.42086	1	15541	15541		52.268	2.3353	1	2582200	+		29150	28287	20864	21030	28536	28536					0.04250669040231969
LDVAYNKI	8	Unmodified	_LDVAYNKI_					0	0	0			REV__tr|U7SM31|U7SM31_FUSNULipoprotein-releasingsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02063PE=3SV=1	REV__tr|U7SM31|U7SM31_FUSNULipoprotein-releasingsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02063PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	468.263468	934.512382	0.030562	1.4311E-05	-0.58328	-0.00027313	-0.55272	-0.00025882	468.2631772331212	44.461	0.4096	44.461	44.267	44.676	0	0.012952	4.2493E-05	NaN	52.268	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2582200	+		29151	28287	20864	21030							0.04250669040231969
LDVAYNKI	8	Unmodified	_LDVAYNKI_					0	0	0			REV__tr|U7SM31|U7SM31_FUSNULipoprotein-releasingsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02063PE=3SV=1	REV__tr|U7SM31|U7SM31_FUSNULipoprotein-releasingsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02063PE=3SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	468.263468	934.512382	-0.43956	-0.00020583	-0.74442	-0.00034858	-1.184	-0.00055441	468.26332610840024	43.666	0.50449	44.435	44.126	44.631	0.7691	-0.012952	-0.00010841	NaN	52.268	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1856300	+		29152	28287	20864	21030							0.04250669040231969
LDVCLKAHWLS	11	Unmodified	_LDVCLKAHWLS_					0	0	0		nc|ENSG00000106290|P49848-4|TAF6;nc|ENSG00000106290|P49848-2|TAF6;ENSG00000106290|ENST00000453269|TAF6;nc|ENSG00000106290|P49848-3|TAF6	nc|ENSG00000106290|P49848-4|TAF6	nc|ENSG00000106290|P49848-4|TAF6	MSMS	A375_MHC_IP_R1	1	428.9466857910156	3	428.897152	1283.66963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.892	1	42.892	42.392	43.392	0								0	0	0	0.16124	1	14883	14883		6.6235	0	1				29153	2680	20865	21031	28537	28537					0.03914005588103464
LDVFGPKHP	9	Unmodified	_LDVFGPKHP_					0	0	0		ENSG00000135956|ENST00000258439|TMEM127	ENSG00000135956|ENST00000258439|TMEM127	ENSG00000135956|ENST00000258439|TMEM127	MULTI-MSMS	A375_MHC_IP_R2	2	506.31939697265625	2	505.276909	1008.53927	-0.72249	-0.00036506	0.11938	6.0322E-05	-0.60311	-0.00030474	505.27689410586675	82.55	0.86019	83.293	82.94	83.8	0.74293					37	16	3	0	0	0	0.60101	1	31276	31276		14.838	0.93222	1	5783400			29154	4733	20866	21032	28538	28538					0.035337776514325014
LDVFLQFRI	9	Unmodified	_LDVFLQFRI_					0	0	0			REV__ENSG00000011405|ENST00000691414|PIK3C2A	REV__ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-SECPEP	A375_MHC_IP_R2	2	384.6253967285156	3	384.225486	1149.65463	0.0738	2.8356E-05	-0.11792	-4.5306E-05	-0.044116	-1.695E-05	384.2252501398747	47.217	0.30629	47.978	47.817	48.123	0.76128					9	5	2	0	0	0	0.78798	1	17743	17743		0.86438	0	1	2163100	+		29155	16208	20867	21033	28539	28539					0.0857888178243229
LDVFSQRAT	9	Unmodified	_LDVFSQRAT_					0	0	0			REV__ENSG00000155275|ENST00000389737|TRMT44	REV__ENSG00000155275|ENST00000389737|TRMT44	MULTI-SECPEP	A375_MHC_IP_R1	1	518.1810302734375	2	518.774731	1035.53491	-0.37118	-0.00019256	0.23576	0.00012231	-0.13542	-7.0251E-05	518.7748455407562	39.236	0.45726	39.236	39.033	39.491	0					30	8	6	0	0	0	0.3213	1	13357	13357		18.146	0	1	11529000	+		29156	19919	20868	21034	28540	28540					0.018562684378593985
LDVINQTW	8	Unmodified	_LDVINQTW_					0	0	0		ENSG00000186591|ENST00000355621|UBE2H;ENST00000486283.1_1_7:129497270-129520783:-|nuORF	ENSG00000186591|ENST00000355621|UBE2H	ENSG00000186591|ENST00000355621|UBE2H	MULTI-SECPEP	A375_MHC_IP_R1	1	495.1822509765625	2	494.758549	987.502546	-0.025625	-1.2678E-05	0.68972	0.00034125	0.6641	0.00032857	494.75880105087487	45.409	0.55572	45.409	45.081	45.636	0					16	10	2	0	0	0	0.94587	1	15977	15977		14.838	4.7643	1	1338600			29157	8763	20869	21035	28541	28541					0.00829481034861601
LDVKELVYW	9	Unmodified	_LDVKELVYW_					0	0	0			REV__ENST00000483258.1_1_3:9952571-9953043:+|nuORF	REV__ENST00000483258.1_1_3:9952571-9953043:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	389.2798156738281	3	388.881497	1163.62266	-0.69354	-0.0002697	0.48798	0.00018977	-0.20555	-7.9936E-05	388.8800721583778	53.554	0.71521	54.305	53.79	54.505	0.75105					32	13	5	0	0	0	0.65623	1	20258	20258		18.373	12.59	1	3460200	+		29158	20401	20870	21036	28542	28542					0.04739469308628941
LDVKELVYW	9	Unmodified	_LDVKELVYW_					0	0	0			REV__ENST00000483258.1_1_3:9952571-9953043:+|nuORF	REV__ENST00000483258.1_1_3:9952571-9953043:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	388.881497	1163.62266	0.31991	0.00012441	-2.0138	-0.00078315	-1.6939	-0.00065874	389.2151645610409	54.527	0.65659	54.527	53.962	54.619	0	0.11115	-0.0008461	NaN	18.373	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1657200	+		29159	20401	20870	21036							0.04739469308628941
LDVKFPNAT	9	Unmodified	_LDVKFPNAT_					0	0	0			REV__ENST00000567421.1_1_15:42570725-42619667:+|nuORF	REV__ENST00000567421.1_1_15:42570725-42619667:+|nuORF	MSMS	A375_MHC_IP_R1	1	502.67437744140625	2	502.7742	1003.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.454	1	65.454	64.954	65.954	0								0	0	0	0.11332	1	23696	23696		37.974	5.6685	1		+		29160	22640	20871	21037	28543	28543					0.032220540689422705
LDVKKTQF	8	Unmodified	_LDVKKTQF_					0	0	0			REV__ENSG00000128311|ENST00000249042|TST	REV__ENSG00000128311|ENST00000249042|TST	MULTI-SECPEP	A375_MHC_IP_R2	2	489.5013122558594	2	489.784567	977.554582	-1.0924	-0.00053504	-0.13094	-6.4131E-05	-1.2233	-0.00059917	489.78461297717257	53.472	0.45979	54.223	53.995	54.454	0.75105					12	8	2	0	0	0	0.8957	1	20240	20240		21.747	3.6117	1	1888300	+		29161	18449	20872	21038	28544	28544					0.06490644448615512
LDVLRKILEKR	11	Unmodified	_LDVLRKILEKR_					0	0	0			REV__tr|U7T2P5|U7T2P5_FUSNUUvrABCsystemproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrBPE=3SV=1	REV__tr|U7T2P5|U7T2P5_FUSNUUvrABCsystemproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrBPE=3SV=1	MSMS	A375_MHC_IP_R2	2	691.7071533203125	2	691.945736	1381.87692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.99	1	114.7	114.2	115.2	0.70985								0	0	0	0.16353	1	42981	42981		0.35063	0	1		+		29162	28754	20873	21039	28545	28545					0.20125536127761734
LDVMHTVHQFY	11	Unmodified	_LDVMHTVHQFY_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;nc|ENSG00000140694|O95453-3|PARN;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-4|PARN	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-SECPEP	A375_MHC_IP_R1	1	464.6787109375	3	463.892179	1388.65471	-0.30551	-0.00014172	-3.7093	-0.0017207	-4.0148	-0.0018624	463.88976292917386	52.534	0.35733	52.534	52.387	52.744	0					13	6	3	0	0	0	0.99331	1	18706	18706		1.1098	0	1	1599300			29163	5179	20874	21040	28546	28546					-0.02407486279889781
LDVNLDLSGV	10	Unmodified	_LDVNLDLSGV_					0	0	0		ENST00000554026.5_1_14:76548780-76549917:+|nuORF	ENST00000554026.5_1_14:76548780-76549917:+|nuORF	ENST00000554026.5_1_14:76548780-76549917:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	522.6972045898438	2	522.782222	1043.54989	-0.81641	-0.0004268	-1.5358	-0.00080289	-2.3522	-0.0012297	522.7809207534336	72.06	0.91005	72.795	72.264	73.174	0.73421					20	17	2	0	0	0	0.91556	1	27216	27216		3.2813	1.6287	1	2017900			29164	13412	20875	21041	28547	28547					0.029857155152058112
LDVRRKLY	8	Unmodified	_LDVRRKLY_					0	0	0			REV__tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	REV__tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	531.1742553710938	2	531.824558	1061.63456	-0.83551	-0.00044435	0.60173	0.00032002	-0.23378	-0.00012433	531.8249135203015	66.221	0.358	66.959	66.782	67.14	0.73811					9	6	2	0	0	0	0.96266	1	25152	25152		16.942	8.349	1	1250300	+		29165	28347	20876	21042	28548	28548					0.10621130842469029
LDVSLAFP	8	Unmodified	_LDVSLAFP_					0	0	0		ENST00000327111.7_1_5:92919409-92919580:+|nuORF	ENST00000327111.7_1_5:92919409-92919580:+|nuORF	ENST00000327111.7_1_5:92919409-92919580:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	431.2882080078125	2	431.239461	860.46437	-0.021908	-9.4477E-06	0.81311	0.00035064	0.7912	0.0003412	431.23836485825814	51.94	0.15349	51.94	51.829	51.982	0					4	2	2	0	0	0	0.77603	1	18442	18442		9.3474	0	1	415610			29166	10739	20877	21043	28549	28549					0.028555951201951757
LDVYEIPVY	9	Unmodified	_LDVYEIPVY_					0	0	0		ENST00000268607.9_1_16:87437939-87438020:+|nuORF	ENST00000268607.9_1_16:87437939-87438020:+|nuORF	ENST00000268607.9_1_16:87437939-87438020:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	556.354248046875	2	555.789515	1109.56448	-0.063882	-3.5505E-05	-3.1466	-0.0017489	-3.2105	-0.0017844	556.2884799020285	114.34	0.30472	114.34	114.26	114.57	0					7	5	2	0	0	0	0.50735	1	41969	41969		19.439	2.4967	1	2932300			29167	10361	20878	21044	28550	28550					0.014077876633336928
LDWAERNLW	9	Unmodified	_LDWAERNLW_					0	0	0		NLRP9|p.G172R|1|0.11|ENSG00000185792|chr19:55733317-55733317|C/T|missense_variant	NLRP9|p.G172R|1|0.11|ENSG00000185792|chr19:55733317-55733317|C/T|missense_variant	NLRP9|p.G172R|1|0.11|ENSG00000185792|chr19:55733317-55733317|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	602.1346435546875	2	601.80128	1201.58801	-0.32302	-0.0001944	0.20419	0.00012288	-0.11883	-7.1512E-05	601.8013495679394	100.71	0.66789	101.47	101.13	101.8	0.76278					30	12	3	0	0	0	0.71341	1	38164	38164		13.042	0	1	6241600			29168	15007	20879	21045	28551	28551					-0.00472353779491641
LDWKKKRKLKK	11	Unmodified	_LDWKKKRKLKK_					0	0	0			REV__FCGR1A|p.E316K|1|0.29|ENSG00000150337|chr1:149791338-149791338|G/A|missense_variant	REV__FCGR1A|p.E316K|1|0.29|ENSG00000150337|chr1:149791338-149791338|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	736.0153198242188	2	735.985195	1469.95584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.84	1	103.84	103.34	104.34	0								0	0	0	0.16353	1	38133	38133		0.35063	0.35063	1		+		29169	26624	20880	21046	28552	28552					0.2396580815272955
LDWMVAPNWS	10	Unmodified	_LDWMVAPNWS_					0	0	0			REV__ENST00000392657.7_1_11:128893918-128894020:-|nuORF	REV__ENST00000392657.7_1_11:128893918-128894020:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	609.6959838867188	2	609.784241	1217.55393	-0.70912	-0.00043241	2.1474	0.0013095	1.4383	0.00087704	609.7856450284099	56.194	0.40926	56.944	56.642	57.051	0.75015					9	7	2	0	0	0	0.71047	1	21143	21143		7.609	1.8771	1	1068100	+		29170	24276	20881	21047	28553	28553					-0.04614518262724232
LDWMVAPNWS	10	Unmodified	_LDWMVAPNWS_					0	0	0			REV__ENST00000392657.7_1_11:128893918-128894020:-|nuORF	REV__ENST00000392657.7_1_11:128893918-128894020:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	609.784241	1217.55393	-0.25672	-0.00015655	3.5571	0.002169	3.3003	0.0020125	609.7862414958043	56.946	0.30501	56.946	56.804	57.109	0	0.0013561	0.0011956	NaN	7.609	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	836630	+		29171	24276	20881	21047							-0.04614518262724232
LDWMVAPNWS	10	Unmodified	_LDWMVAPNWS_					0	0	0			REV__ENST00000392657.7_1_11:128893918-128894020:-|nuORF	REV__ENST00000392657.7_1_11:128893918-128894020:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	609.784241	1217.55393	-0.70912	-0.00043241	2.1474	0.0013095	1.4383	0.00087704	609.7856450284099	56.194	0.40926	56.944	56.642	57.051	0.75015	-0.0013561	-0.00052354	NaN	7.609	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1068100	+		29172	24276	20881	21047							-0.04614518262724232
LDWNDDCVTGW	11	Unmodified	_LDWNDDCVTGW_					0	0	0			REV__ENSG00000179954|ENST00000389623|SSC5D	REV__ENSG00000179954|ENST00000389623|SSC5D	MSMS	A375_MHC_IP_R2	2	661.9899291992188	2	662.269152	1322.52375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.856	1	88.588	88.088	89.088	0.7318								0	0	0	0.16213	1	33424	33424		7.609	3.6646	1		+		29173	21592	20882	21048	28554	28554					-0.12460921718616191
LDWNDDCVTGW	11	Unmodified	_LDWNDDCVTGW_					0	0	0			REV__ENSG00000179954|ENST00000389623|SSC5D	REV__ENSG00000179954|ENST00000389623|SSC5D	MSMS	A375_MHC_IP_R2	2	662.2410888671875	2	662.269152	1322.52375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.45	1	115.16	114.66	115.66	0.70985								0	0	0	0.16258	1	43144	43144		5.2969	2.0156	1		+		29174	21592	20882	21048	28555	28555					-0.12460921718616191
LDWPLSLDWFP	11	Unmodified	_LDWPLSLDWFP_					0	0	0			REV__ENST00000378853.3_1_1:1309740-1310526:-|nuORF	REV__ENST00000378853.3_1_1:1309740-1310526:-|nuORF	MSMS	A375_MHC_IP_R2	2	695.1844482421875	2	694.847896	1387.68124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.594	1	68.331	67.831	68.831	0.73631								0	0	0	0.16249	1	25611	25611		5.7319	0	1		+		29175	24188	20883	21049	28556	28556					0.0029052588306512916
LDWQRERWQIW	11	Unmodified	_LDWQRERWQIW_					0	0	0		nc|ENSG00000047648|O43182-4|ARHGAP6;ENSG00000047648|ENST00000337414|ARHGAP6;ENST00000489330.6_1_X:11156985-11160533:-|nuORF	nc|ENSG00000047648|O43182-4|ARHGAP6	nc|ENSG00000047648|O43182-4|ARHGAP6	MULTI-MSMS	A375_MHC_IP_R1	1	539.6461791992188	3	539.275791	1614.80554	-1.0147	-0.0005472	-1.2978	-0.00069987	-2.3125	-0.0012471	539.2751701460336	67.615	0.55771	67.615	67.297	67.854	0					13	10	2	0	0	0	0.73636	1	24504	24504		2.8433	2.3373	1	1432500			29176	1206	20884	21050	28557	28557					0.022734164231223986
LDWVKIIGD	9	Unmodified	_LDWVKIIGD_					0	0	0			REV__ENSG00000143476|ENST00000366991|DTL	REV__ENSG00000143476|ENST00000366991|DTL	MULTI-SECPEP	A375_MHC_IP_R1	1	529.2239379882812	2	529.797675	1057.5808	-0.66483	-0.00035223	-2.8959	-0.0015343	-3.5608	-0.0018865	529.7964440386385	65.233	0.71297	65.233	64.903	65.616	0					17	13	2	0	0	0	0.33896	1	23732	23732		47.594	7.6447	1	560130	+		29177	19360	20885	21051	28558	28558					0.054309136201027286
LDYDGYSF	8	Unmodified	_LDYDGYSF_					0	0	0			REV__ENSG00000101292|ENST00000678254|PROKR2	REV__ENSG00000101292|ENST00000678254|PROKR2	MSMS	A375_MHC_IP_R2	2	490.1480407714844	2	490.205815	978.397078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.735	1	87.468	86.968	87.968	0.733								0	0	0	0.16876	1	32984	32984		14.582	4.3983	1		+		29178	17155	20886	21052	28559	28559					-0.09298479881420008
LDYDHDWELPI	11	Unmodified	_LDYDHDWELPI_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	A375_MHC_IP_R2	2	472.1659851074219	3	472.554108	1414.6405	-0.6638	-0.00031368	0.1292	6.1056E-05	-0.5346	-0.00025263	472.88847985047835	55.314	0.50711	56.064	55.881	56.388	0.75075					12	9	2	0	0	0	0.99227	1	20927	20927		1.2148	0	1	908360	+		29179	18581	20887	21053	28560	28560					-0.05023860227197474
LDYEIKYY	8	Unmodified	_LDYEIKYY_					0	0	0		nc|ENSG00000080224|Q9UF33|EPHA6;ENSG00000080224|ENST00000389672|EPHA6	nc|ENSG00000080224|Q9UF33|EPHA6	nc|ENSG00000080224|Q9UF33|EPHA6	MULTI-SECPEP	A375_MHC_IP_R2	2	553.1690063476562	2	553.773865	1105.53318	-0.92182	-0.00051048	-0.66915	-0.00037056	-1.591	-0.00088103	553.7734775031806	36.255	0.35778	37.026	36.85	37.207	0.7709					12	6	3	0	0	0	0.93416	1	13256	13256		14.582	5.1986	1	2234100			29180	1710	20888	21054	28561	28561					-0.015367853707630275
LDYEVQQY	8	Unmodified	_LDYEVQQY_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4;FAT4|p.R1902Q|1|0.16|ENSG00000196159|chr4:125408579-125408579|G/A|missense_variant	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MSMS	A375_MHC_IP_R2	2	531.3214111328125	2	529.245472	1056.47639	-0.61741	-0.00032676	0.49722	0.00026315	-0.12019	-6.3609E-05	529.2455826124203	72.779	2.3883	73.514	72.721	75.109	0.7354					108	46	5	0	0	0	0.77488	1	27615	27615		13.508	0	1	19715000			29181	9009	20889	21055	28562	28562					-0.049588329272637566
LDYFDNEAY	9	Unmodified	_LDYFDNEAY_					0	0	0			REV__ENSG00000145982|ENST00000274680|FARS2	REV__ENSG00000145982|ENST00000274680|FARS2	MULTI-SECPEP	A375_MHC_IP_R1	1	575.326416015625	2	575.240386	1148.46622	-0.16609	-9.5541E-05	-0.72553	-0.00041735	-0.89162	-0.0005129	575.7423235281697	103.88	0.25374	103.88	103.68	103.93	0					6	4	2	0	0	0	0.71541	1	38132	38132		11.64	4.9171	1	916370	+		29182	19508	20890	21056	28563	28563					-0.10207440652516198
LDYHDKVSLSF	11	Unmodified	_LDYHDKVSLSF_					0	0	0			REV__ENST00000491832.6_1_6:56955645-56989586:+|nuORF	REV__ENST00000491832.6_1_6:56955645-56989586:+|nuORF	MSMS	A375_MHC_IP_R2	2	662.3739624023438	2	662.33261	1322.65067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.988	1	98.748	98.248	99.248	0.75977								0	0	0	0.16249	1	37183	37183		5.7319	0	1		+		29183	24036	20891	21057	28564	28564					0.0022474749805496685
LDYKNQFN	8	Unmodified	_LDYKNQFN_					0	0	0			REV__tr|U7SLN4|U7SLN4_FUSNUHigAfamilyaddictionmoduleantidoteproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01966PE=4SV=1	REV__tr|U7SLN4|U7SLN4_FUSNUHigAfamilyaddictionmoduleantidoteproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01966PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	520.6505126953125	2	521.253631	1040.49271	-0.87788	-0.0004576	0.62153	0.00032398	-0.25635	-0.00013362	521.2536148800228	56.229	0.71463	56.979	56.489	57.203	0.75015					27	13	3	0	0	0	0.972	1	21096	21096		12.532	12.532	1	3434600	+		29184	28272	20892	21058	28565	28565					-0.025917069705201357
LDYKVSIDAD	10	Unmodified	_LDYKVSIDAD_					0	0	0		GRIN3A|p.E852K|1|0.24|ENSG00000198785|chr9:101623378-101623378|C/T|missense_variant	GRIN3A|p.E852K|1|0.24|ENSG00000198785|chr9:101623378-101623378|C/T|missense_variant	GRIN3A|p.E852K|1|0.24|ENSG00000198785|chr9:101623378-101623378|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	380.97662353515625	3	380.1924	1137.55537	0.16777	6.3786E-05	2.3546	0.0008952	2.5224	0.00095899	380.1934623938007	43.354	0.35546	44.126	43.926	44.282	0.7724					10	6	2	0	0	0	0.93194	1	16131	16131		5.4027	2.9042	1	761200			29185	14084	20893	21059	28566	28566					-0.00790605692986901
LDYLQREWRFL	11	Unmodified	_LDYLQREWRFL_					0	0	0		ENSG00000215262|ENST00000399881|KCNU1	ENSG00000215262|ENST00000399881|KCNU1	ENSG00000215262|ENST00000399881|KCNU1	MSMS	A375_MHC_IP_R2	2	513.6002197265625	3	513.608659	1537.80415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.092	1	47.853	47.353	48.353	0.76128								0	0	0	0.16334	1	17649	17649		1.3296	0	1				29186	9642	20894	21060	28567	28567					0.05675782334355972
LDYLRFAFQL	10	Unmodified	_LDYLRFAFQL_					0	0	0			REV__ENST00000569097.1_1_6:160514621-160514993:+|nuORF	REV__ENST00000569097.1_1_6:160514621-160514993:+|nuORF	MSMS	A375_MHC_IP_R2	2	643.1022338867188	2	643.350606	1284.68666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.64	1	103.4	102.9	103.9	0.76428								0	0	0	0.15332	1	38885	38885		10.074	0.6908	1		+		29187	26266	20895	21061	28568	28568					0.05570249465563393
LDYNEHNF	8	Unmodified	_LDYNEHNF_					0	0	0			REV__FMO2|p.G270D|1|0.16|ENSG00000094963|chr1:171204046-171204046|G/A|missense_variant	REV__FMO2|p.G270D|1|0.16|ENSG00000094963|chr1:171204046-171204046|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	526.6273193359375	2	526.227613	1050.44067	-0.83946	-0.00044175	1.5738	0.00082816	0.73431	0.00038641	526.228486807814	38.535	0.50672	39.309	38.946	39.453	0.77451					14	9	2	0	0	0	0.91495	1	14235	14235		18.135	0	1	2003100	+		29188	26640	20896	21062	28569	28569					-0.08252870384285416
LDYQQMRYVTF	11	Unmodified	_LDYQQMRYVTF_					0	0	0			REV__nc|ENSG00000125912|Q969V3-2|NCLN	REV__nc|ENSG00000125912|Q969V3-2|NCLN	MSMS	A375_MHC_IP_R1	1	488.4693908691406	3	488.571105	1462.69149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.903	1	62.903	62.403	63.403	0								0	0	0	0.16275	1	22726	22726		4.4062	3.0765	1		+		29189	18373	20897	21063	28570	28570					-0.021352344539991464
LDYQQMRYVTF	11	Unmodified	_LDYQQMRYVTF_					0	0	0			REV__nc|ENSG00000125912|Q969V3-2|NCLN	REV__nc|ENSG00000125912|Q969V3-2|NCLN	MSMS	A375_MHC_IP_R1	1	488.4693603515625	3	488.571105	1462.69149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.531	1	63.531	63.031	64.031	0								0	0	0	0.16309	1	22965	22965		2.6312	0.37851	1		+		29190	18373	20897	21063	28571	28571					-0.021352344539991464
LDYQQMRYVTF	11	Unmodified	_LDYQQMRYVTF_					0	0	0			REV__nc|ENSG00000125912|Q969V3-2|NCLN	REV__nc|ENSG00000125912|Q969V3-2|NCLN	MSMS	A375_MHC_IP_R2	2	488.46905517578125	3	488.571105	1462.69149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.268	1	63.01	62.51	63.51	0.74263								0	0	0	0.16224	1	23601	23601		7.0371	3.45	1		+		29191	18373	20897	21063	28572	28572					-0.021352344539991464
LDYQQPFNRI	10	Unmodified	_LDYQQPFNRI_					0	0	0			REV__ENSG00000100403|ENST00000352645|ZC3H7B	REV__ENSG00000100403|ENST00000352645|ZC3H7B	MULTI-SECPEP	A375_MHC_IP_R2	2	431.1184387207031	3	431.891055	1292.65134	-0.2283	-9.86E-05	-0.68984	-0.00029794	-0.91814	-0.00039654	431.8914352377679	75.892	0.40833	76.632	76.282	76.691	0.74052					11	7	2	0	0	0	0.93406	1	28749	28749		6.1918	2.6048	1	451910	+		29192	17087	20898	21064	28573	28573					0.016715869377549097
LDYRKVKY	8	Unmodified	_LDYRKVKY_					0	0	0		ENST00000500685.6_1_12:102433695-102433737:-|nuORF	ENST00000500685.6_1_12:102433695-102433737:-|nuORF	ENST00000500685.6_1_12:102433695-102433737:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	543.2109375	2	542.811116	1083.60768	-0.60494	-0.00032837	-0.34948	-0.0001897	-0.95442	-0.00051807	542.8108806899705	60.54	0.66117	60.54	60.312	60.973	0					20	12	2	0	0	0	0.95424	1	21825	21825		18.135	0	1	2566800			29193	12777	20899	21065	28574	28574					0.06922022231287883
LDYRLPTLR	9	Unmodified	_LDYRLPTLR_					0	0	0			REV__nc|ENSG00000009694|Q9UKZ4-2|TENM1	REV__nc|ENSG00000009694|Q9UKZ4-2|TENM1	MULTI-SECPEP	A375_MHC_IP_R1	1	383.63275146484375	3	382.892507	1145.65569	0.33587	0.0001286	-1.1521	-0.00044112	-0.8162	-0.00031252	382.8921376774238	33.492	0.15385	33.492	33.393	33.547	0					4	2	2	0	0	0	0.75519	1	10956	10956		14.405	0	1	293960	+		29194	16185	20900	21066	28575	28575					0.08869096151306621
LDYSYHLS	8	Unmodified	_LDYSYHLS_					0	0	0			REV__ENST00000509912.5_1_4:170476851-170520268:-|nuORF	REV__ENST00000509912.5_1_4:170476851-170520268:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	498.6456604003906	2	499.234907	996.455261	-0.34968	-0.00017457	-1.937	-0.00096702	-2.2867	-0.0011416	499.2337342658267	103.62	0.35701	103.62	103.47	103.83	0					10	6	2	0	0	0	0.94479	1	38097	38097		13.508	0	1	430620	+		29195	19019	20901	21067	28576	28576					-0.043107982361448194
LDYTIIKKQLY	11	Unmodified	_LDYTIIKKQLY_					0	0	0			REV__ENST00000559938.1_1_15:50515185-50518319:+|nuORF	REV__ENST00000559938.1_1_15:50515185-50518319:+|nuORF	MSMS	A375_MHC_IP_R2	2	466.6652526855469	3	466.606144	1396.7966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.19	1	143.22	142.72	143.72	0.029739								0	0	0	0.16331	1	55967	55967		0.50596	0.051438	1		+		29196	19198	20902	21068	28577	28577					0.11407630014105052
LDYTQMLLY	9	Unmodified	_LDYTQMLLY_					0	0	0		nc|ENSG00000152582|Q9C093-2|SPEF2;ENSG00000152582|ENST00000356031|SPEF2;nc|ENSG00000152582|Q9C093-4|SPEF2	nc|ENSG00000152582|Q9C093-2|SPEF2	nc|ENSG00000152582|Q9C093-2|SPEF2	MULTI-SECPEP	A375_MHC_IP_R1	1	580.1876831054688	2	580.288825	1158.5631	0.23705	0.00013756	-0.33825	-0.00019628	-0.1012	-5.8723E-05	580.2885100445951	48.704	0.65746	48.704	48.476	49.134	0					18	12	2	0	0	0	0.71541	1	17175	17175		11.64	11.64	1	4046300			29197	5974	20903	21069	28578	28578					-0.00984169697062498
LDYVDSALL	9	Unmodified	_LDYVDSALL_					0	0	0		ENSG00000116991|ENST00000674635|SIPA1L2	ENSG00000116991|ENST00000674635|SIPA1L2	ENSG00000116991|ENST00000674635|SIPA1L2	MULTI-SECPEP	A375_MHC_IP_R2	2	1009.0645751953125	1	1008.5248	1007.51753	0.0020276	2.0449E-06	-0.90987	-0.00091762	-0.90784	-0.00091558	1008.5240890501898	121.7	0.3555	122.15	121.98	122.33	0.44488					11	6	3	0	0	0	0.3213	1	46509	46509		30.637	0	1	18759000			29198	3449	20904	21070	28579	28579					0.014069281122033317
LDYYYAFETY	10	Unmodified	_LDYYYAFETY_					0	0	0		tr|U7SPA4|U7SPA4_FUSNUOMFfamilyoutermembranefactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01678PE=3SV=1	tr|U7SPA4|U7SPA4_FUSNUOMFfamilyoutermembranefactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01678PE=3SV=1	tr|U7SPA4|U7SPA4_FUSNUOMFfamilyoutermembranefactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01678PE=3SV=1	MSMS	A375_MHC_IP_R2	2	673.8995361328125	2	674.292619	1346.57069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.51	1	143.53	143.03	144.03	0.024414								0	0	0	0.15591	1	56081	56081		1.6526	0	1				29199	29576	20905	21071	28580	28580					-0.08873738895817951
LEADFAKRGY	10	Unmodified	_LEADFAKRGY_					0	0	0		ENSG00000136930|ENST00000259457|PSMB7;ENST00000498485.5_1_9:127146904-127177393:-|nuORF;nc|ENSG00000136930|Q99436-2|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	MULTI-SECPEP	A375_MHC_IP_R1	1	390.9365234375	3	390.536501	1168.58767	0.35462	0.00013849	-0.12937	-5.0524E-05	0.22525	8.7969E-05	390.5362969117571	35.578	0.66278	35.578	35.167	35.83	0					29	12	4	0	0	0	0.22459	1	11840	11840		49.742	24.785	1	5817200			29200	4841	20906	21072	28581	28581					0.010122265006657472
LEADFAKRGY	10	Unmodified	_LEADFAKRGY_					0	0	0		ENSG00000136930|ENST00000259457|PSMB7;ENST00000498485.5_1_9:127146904-127177393:-|nuORF;nc|ENSG00000136930|Q99436-2|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	MULTI-MSMS	A375_MHC_IP_R2	2	390.936279296875	3	390.536501	1168.58767	-0.37703	-0.00014725	-0.26862	-0.00010491	-0.64565	-0.00025215	390.536510957627	34.867	0.80867	35.631	35.324	36.132	0.76338					33	15	4	0	0	0	0.076247	1	12589	12589		68.76	34.939	1	7409400			29201	4841	20906	21072	28582	28582					0.010122265006657472
LEADLEKKF	9	Unmodified	_LEADLEKKF_					0	0	0		nc|ENSG00000172053|P47897-2|QARS1;ENSG00000172053|ENST00000306125|QARS1	nc|ENSG00000172053|P47897-2|QARS1	nc|ENSG00000172053|P47897-2|QARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	365.2694396972656	3	364.869368	1091.58628	-0.089548	-3.2673E-05	0.67756	0.00024722	0.58801	0.00021455	364.86947892248685	41.286	0.45689	41.286	41.013	41.47	0					20	8	3	0	0	0	0.061442	1	14232	14232		59.052	28.621	1	6410000			29202	7675	20907	21073	28583	28583					0.04414592411899321
LEADLEKKF	9	Unmodified	_LEADLEKKF_					0	0	0		nc|ENSG00000172053|P47897-2|QARS1;ENSG00000172053|ENST00000306125|QARS1	nc|ENSG00000172053|P47897-2|QARS1	nc|ENSG00000172053|P47897-2|QARS1	MULTI-MSMS	A375_MHC_IP_R2	2	365.2693786621094	3	364.869368	1091.58628	-0.094316	-3.4413E-05	0.40907	0.00014926	0.31475	0.00011484	364.86948408118815	40.514	0.45766	41.288	41.082	41.54	0.77451					15	8	2	0	0	0	0.012843	1	15016	15016		75.571	32.735	1	5092000			29203	7675	20907	21073	28584	28584					0.04414592411899321
LEADMEADE	9	Unmodified	_LEADMEADE_					0	0	0			REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I	REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I	MULTI-SECPEP	A375_MHC_IP_R1	1	512.1029663085938	2	511.70278	1021.39101	-0.64115	-0.00032808	0.59282	0.00030335	-0.04833	-2.473E-05	511.70327875598457	53.048	0.60745	53.048	52.744	53.352	0					28	11	3	0	0	0	0.67483	1	18898	18898		14.838	0	1	3151200	+		29204	17078	20908	21074	28585	28585					-0.1188336617525465
LEADMEADE	9	Unmodified	_LEADMEADE_					0	0	0			REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I	REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I	MULTI-MSMS	A375_MHC_IP_R2	2	512.1029663085938	2	511.70278	1021.39101	-1.1611	-0.00059412	0.68521	0.00035062	-0.47586	-0.0002435	511.7032967911953	52.32	0.55503	53.072	52.882	53.437	0.75225					18	10	2	0	0	0	0.58047	1	19733	19733		15.847	0	1	2507300	+		29205	17078	20908	21074	28586	28586					-0.1188336617525465
LEADPYSKW	9	Unmodified	_LEADPYSKW_					0	0	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	A375_MHC_IP_R1	1	555.1685791015625	2	554.769114	1107.52368	-0.62374	-0.00034603	0.46919	0.00026029	-0.15456	-8.5744E-05	554.7692456753472	58.533	0.55846	58.533	58.278	58.836	0					21	10	3	0	0	0	0.049608	1	21023	21023		93.938	50.166	1	6212100			29206	5800	20909	21075	28587	28587					-0.02578553656303484
LEADPYSKW	9	Unmodified	_LEADPYSKW_					0	0	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	A375_MHC_IP_R2	2	555.16845703125	2	554.769114	1107.52368	-1.0535	-0.00058445	0.18671	0.00010358	-0.8668	-0.00048087	554.7691874534272	57.854	0.40591	58.603	58.323	58.729	0.74894					21	7	3	0	0	0	0.019126	1	21862	21862		84.522	38.782	1	6056900			29207	5800	20909	21075	28588	28588					-0.02578553656303484
LEADSRAELF	10	Unmodified	_LEADSRAELF_					0	0	0		ENST00000590540.5_1_19:9959871-9960277:+|nuORF;ENST00000247970.8_1_19:9960196-9960277:+|nuORF	ENST00000590540.5_1_19:9959871-9960277:+|nuORF	ENST00000590540.5_1_19:9959871-9960277:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	575.234130859375	2	575.790578	1149.5666	-0.38234	-0.00022015	-0.16662	-9.5941E-05	-0.54897	-0.00031609	575.7904246634391	84.521	1.7779	84.521	83.634	85.412	0					64	34	4	0	0	0	0.099365	1	30998	30998		81.89	11.558	1	39254000			29208	10192	20910	21076	28589	28589					-0.002197835988681618
LEADSRAELF	10	Unmodified	_LEADSRAELF_					0	0	0		ENST00000590540.5_1_19:9959871-9960277:+|nuORF;ENST00000247970.8_1_19:9960196-9960277:+|nuORF	ENST00000590540.5_1_19:9959871-9960277:+|nuORF	ENST00000590540.5_1_19:9959871-9960277:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	576.190185546875	2	575.790578	1149.5666	-0.13071	-7.5264E-05	-0.61402	-0.00035355	-0.74473	-0.00042881	575.7902122723483	83.737	0.92178	84.477	83.998	84.92	0.73962					60	17	5	0	0	0	0.22217	1	31753	31753		56.177	3.9087	1	37915000			29209	10192	20910	21076	28590	28590					-0.002197835988681618
LEAENYNIE	9	Unmodified	_LEAENYNIE_					0	0	0		ENSG00000169914|ENST00000375120|OTUD3	ENSG00000169914|ENST00000375120|OTUD3	ENSG00000169914|ENST00000375120|OTUD3	MULTI-SECPEP	A375_MHC_IP_R2	2	547.1694946289062	2	547.753661	1093.49277	-1.1073	-0.00060655	0.99714	0.00054619	-0.1102	-6.036E-05	547.7541539569771	29.882	0.45715	30.58	30.434	30.892	0.69872					13	8	2	0	0	0	0.54812	1	10592	10592		14.405	14.405	1	2950500			29210	7450	20911	21077	28591	28591					-0.05023751761200401
LEAFRPREKPD	11	Unmodified	_LEAFRPREKPD_					0	0	0			REV__ENSG00000102755|ENST00000282397|FLT1	REV__ENSG00000102755|ENST00000282397|FLT1	MULTI-MSMS	A375_MHC_IP_R1	1	679.7642211914062	2	679.364776	1356.715	-0.61906	-0.00042057	-0.51901	-0.00035259	-1.1381	-0.00077316	679.3645364781246	79.753	0.61473	79.753	79.316	79.931	0					28	11	3	0	0	0	0.72728	1	29061	29061		11.495	0.6952	1	11878000	+		29211	17229	20912	21078	28592	28592					0.05090947374856114
LEAGFVQLPD	10	Unmodified	_LEAGFVQLPD_					0	0	0			REV__ENST00000481883.1_1_21:47977249-47978399:+|nuORF	REV__ENST00000481883.1_1_21:47977249-47978399:+|nuORF	MSMS	A375_MHC_IP_R1	1	544.6875610351562	2	544.784764	1087.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.917	1	78.917	78.417	79.417	0								0	0	0	0.14555	1	28804	28804		26.268	1.5943	1		+		29212	25268	20913	21079	28593	28593					0.014700193778026005
LEALRADRF	9	Unmodified	_LEALRADRF_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L;nc|ENSG00000177409|Q8IVG5-2|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-SECPEP	A375_MHC_IP_R1	1	364.6047668457031	3	364.204974	1089.59309	-0.097205	-3.5403E-05	0.3411	0.00012423	0.2439	8.8828E-05	364.20501428876287	38.344	0.96851	38.344	37.761	38.73	0					58	18	4	0	0	0	0.61758	1	12854	12854		21.59	0	1	46446000			29213	8080	20914	21080	28594	28594					0.05187950083131909
LEALRDQI	8	Unmodified	_LEALRDQI_					0	0	0		nc|ENSG00000136883|Q96FN5|KIF12;ENSG00000136883|ENST00000640217|KIF12	nc|ENSG00000136883|Q96FN5|KIF12	nc|ENSG00000136883|Q96FN5|KIF12	MULTI-SECPEP	A375_MHC_IP_R2	2	479.67120361328125	2	479.271824	956.529095	-0.54727	-0.00026229	-0.443	-0.00021232	-0.99027	-0.00047461	479.2715078902645	131.07	0.20264	131.29	131.16	131.36	0.2142					5	3	2	0	0	0	0.972	1	51585	51585		4.756	0	1	4190700			29214	4837	20915	21081	28595	28595					0.04909169926179402
LEAMEESNW	9	Unmodified	_LEAMEESNW_					0	0	0		ENST00000587327.5_1_19:11546705-11546834:+|nuORF	ENST00000587327.5_1_19:11546705-11546834:+|nuORF	ENST00000587327.5_1_19:11546705-11546834:+|nuORF	MSMS	A375_MHC_IP_R2	2	554.635009765625	2	554.734414	1107.45428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.62	1	77.361	76.861	77.861	0.74052								0	0	0	0.15486	1	29091	29091		7.9102	0	1				29215	13744	20916	21082	28596	28596					-0.09515380667335194
LEAPRLLVPL	10	Unmodified	_LEAPRLLVPL_					0	0	0			REV__ENST00000512107.5_3_5:138609786-138614022:+|nuORF	REV__ENST00000512107.5_3_5:138609786-138614022:+|nuORF	MSMS	A375_MHC_IP_R1	1	560.7277221679688	2	560.858067	1119.70158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.527	1	82.527	82.027	83.027	0								0	0	0	0.15583	1	30179	30179		3.9444	1.3669	1		+		29216	25597	20917	21083	28597	28597					0.1465174133356868
LEAQFHLHF	9	Unmodified	_LEAQFHLHF_					0	0	0		ENSG00000151365|ENST00000281030|THRSP	ENSG00000151365|ENST00000281030|THRSP	ENSG00000151365|ENST00000281030|THRSP	MULTI-SECPEP	A375_MHC_IP_R1	1	571.1712646484375	2	571.293091	1140.57163	-0.34077	-0.00019468	-3.6244	-0.0020706	-3.9652	-0.0022653	571.7918782335482	64.825	0.30548	64.825	64.649	64.954	0					6	5	2	0	0	0	0.73363	1	23504	23504		10.824	0	1	662120			29217	5899	20918	21084	28598	28598					0.0069656505440889305
LEARCHEMK	9	Unmodified	_LEARCHEMK_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-SECPEP	A375_MHC_IP_R2	2	373.64111328125	3	372.847804	1115.52158	0.61305	0.00022857	2.2629	0.00084373	2.876	0.0010723	372.8487790204475	46.727	0.25258	47.488	47.361	47.613	0.76128					7	4	2	0	0	0	0.76187	1	17506	17506		2.2828	0	1	1119200			29218	3184	20919	21085	28599	28599					-0.03155628937383881
LEASAYIAGY	10	Unmodified	_LEASAYIAGY_					0	0	0			REV__ENST00000528727.5_1_11:99426939-100095567:+|nuORF	REV__ENST00000528727.5_1_11:99426939-100095567:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	529.212890625	2	529.263665	1056.51278	-0.51523	-0.00027269	-0.57858	-0.00030622	-1.0938	-0.00057891	529.2634347817602	70.514	0.40633	71.248	70.946	71.352	0.7342					9	7	2	0	0	0	0.6806	1	26670	26670		14.838	0.25658	1	1595000	+		29219	19705	20920	21086	28600	28600					-0.013219560305742561
LEASFNGPL	9	Unmodified	_LEASFNGPL_					0	0	0			REV__tr|U7SZQ6|U7SZQ6_FUSNUphosphoserinephosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00833PE=4SV=1	REV__tr|U7SZQ6|U7SZQ6_FUSNUphosphoserinephosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00833PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	474.645263671875	2	474.245275	946.475997	-0.69227	-0.00032831	0.32815	0.00015562	-0.36412	-0.00017268	474.2454209129767	55.003	0.46027	55.754	55.523	55.984	0.75075					13	8	2	0	0	0	0.2002	1	20807	20807		37.974	5.6685	1	1920200	+		29220	28657	20921	21087	28601	28601					0.0006179214353778661
LEATGLRWGL	10	Unmodified	_LEATGLRWGL_					0	0	0			REV__ENST00000586342.1_1_19:892612-892729:-|nuORF	REV__ENST00000586342.1_1_19:892612-892729:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	372.9447021484375	3	372.545108	1114.61349	-0.063539	-2.3671E-05	0.11056	4.119E-05	0.047025	1.7519E-05	372.545073638403	53.593	0.87056	54.344	53.893	54.764	0.75105					24	16	2	0	0	0	0.70615	1	20269	20269		9.544	1.0997	1	2073700	+		29221	26386	20922	21088	28602	28602					0.06077120742952502
LEATGLRWGL	10	Unmodified	_LEATGLRWGL_					0	0	0			REV__ENST00000586342.1_1_19:892612-892729:-|nuORF	REV__ENST00000586342.1_1_19:892612-892729:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	372.545108	1114.61349	-0.063539	-2.3671E-05	0.11056	4.119E-05	0.047025	1.7519E-05	372.545073638403	53.593	0.87056	54.344	53.893	54.764	0.75105	-0.030847	0.00047566	NaN	9.544	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2073700	+		29222	26386	20922	21088							0.06077120742952502
LEATIAMLL	9	Unmodified	_LEATIAMLL_					0	0	0		ENST00000496416.1_1_21:43985963-43995993:+|nuORF;ENSG00000160190|ENST00000352133|SLC37A1	ENST00000496416.1_1_21:43985963-43995993:+|nuORF	ENST00000496416.1_1_21:43985963-43995993:+|nuORF	MSMS	A375_MHC_IP_R2	2	487.6817932128906	2	487.783179	973.551804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.77	1	116.46	115.96	116.96	0.68999								0	0	0	0.062773	1	43647	43647		50.855	6.448	1				29223	6401	20923	21089	28603	28603					0.06397052999443531
LEATLRQCKKK	11	Unmodified	_LEATLRQCKKK_					0	0	0			REV__nc|ENSG00000196535|Q92614-5|MYO18A	REV__nc|ENSG00000196535|Q92614-5|MYO18A	MSMS	A375_MHC_IP_R2	2	659.7847900390625	2	659.387197	1316.75984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.83	1	101.59	101.09	102.09	0.76278								0	0	0	0.16203	1	38224	38224		8.1555	2.4237	1		+		29224	22206	20924	21090	28604	28604					0.114130549165111
LEATLVLLL	9	Unmodified	_LEATLVLLL_					0	0	0			REV__ENSG00000203730|ENST00000367565|TEDDM1	REV__ENSG00000203730|ENST00000367565|TEDDM1	MULTI-SECPEP	A375_MHC_IP_R1	1	983.9536743164062	1	984.63396	983.626684	-0.1602	-0.00015774	0.28547	0.00028108	0.12527	0.00012334	984.6341158701188	139.04	1.3202	139.04	138.86	140.18	0					75	25	4	0	0	0	0.07754	1	53673	53673		74.423	14.033	1	45048000	+		29225	22468	20925	21091	28605	28605					0.1342155880233804
LEATLVLLL	9	Unmodified	_LEATLVLLL_					0	0	0			REV__ENSG00000203730|ENST00000367565|TEDDM1	REV__ENSG00000203730|ENST00000367565|TEDDM1	MULTI-MATCH	A375_MHC_IP_R2	2		1	984.63396	983.626684	0.18834	0.00018544	-0.15673	-0.00015432	0.031607	3.1121E-05	984.6337106710714	138.92	1.5154	138.98	138.75	140.26	0.059906	-0.031898	-0.00025076	NaN	74.423	60	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23282000	+		29226	22468	20925	21091							0.1342155880233804
LEATTDNNRII	11	Unmodified	_LEATTDNNRII_					0	0	0		CON__P08730-1	CON__P08730-1	CON__P08730-1	MULTI-MSMS	A375_MHC_IP_R1	1	420.9582824707031	3	420.557853	1258.65173	0.39235	0.00016501	1.2234	0.0005145	1.6157	0.00067951	420.55841842410655	49.617	0.56059	49.617	49.336	49.896	0					14	10	2	0	0	0	0.73016	1	17569	17569		8.7518	0.30748	1	1328700		+	29227	594	20926	21092	28606	28606					0.032749618669413394
LEAVARHRLI	10	Unmodified	_LEAVARHRLI_					0	0	0		DNAAF3|p.M91R|1|0.29|ENSG00000167646|chr19:55165420-55165420|A/C|missense_variant	DNAAF3|p.M91R|1|0.29|ENSG00000167646|chr19:55165420-55165420|A/C|missense_variant	DNAAF3|p.M91R|1|0.29|ENSG00000167646|chr19:55165420-55165420|A/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	589.7610473632812	2	589.361839	1176.70913	-0.64138	-0.00037801	-0.54887	-0.00032349	-1.1903	-0.00070149	589.3613127260497	138.92	0.80783	138.92	138.76	139.57	0					31	15	4	0	0	0	0.94421	1	53409	53409		3.9444	1.2092	1	4601400			29228	758	20927	21093	28607	28607					0.12783893653841005
LEAVTRHQL	9	Unmodified	_LEAVTRHQL_					0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	534.2030639648438	2	533.803823	1065.59309	-0.64296	-0.00034322	0.13508	7.2108E-05	-0.50788	-0.00027111	533.8036980952387	42.113	0.35302	42.113	41.932	42.285	0					12	6	3	0	0	0	0.69507	1	14599	14599		9.3831	2.66	1	3280700	+		29229	21568	20928	21094	28608	28608					0.06291950083118536
LEAWLRER	8	Unmodified	_LEAWLRER_					0	0	0			REV__ENST00000497675.2_1_1:2125076-2125544:-|nuORF	REV__ENST00000497675.2_1_1:2125076-2125544:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	358.6012878417969	3	358.201452	1071.58253	0.12962	4.6432E-05	-0.3201	-0.00011466	-0.19048	-6.8229E-05	358.2012889321179	43.575	0.50744	43.575	43.3	43.808	0					22	9	3	0	0	0	0.72434	1	15182	15182		27.223	4.5652	1	7037100	+		29230	20269	20929	21095	28609	28609					0.049599674286810114
LECCVPNLKI	10	Unmodified	_LECCVPNLKI_					0	0	0			REV__ENSG00000066739|ENST00000359933|ATG2B	REV__ENSG00000066739|ENST00000359933|ATG2B	MULTI-SECPEP	A375_MHC_IP_R1	1	566.6986694335938	2	566.29867	1130.58279	-0.3141	-0.00017788	1.0149	0.00057471	0.70075	0.00039683	566.2989745562371	35.992	0.45783	35.992	35.83	36.287	0					19	8	4	0	0	0	0.88361	1	12069	12069		18.146	8.0724	1	2569100	+		29231	16523	20930	21096	28610	28610					0.022718830420444647
LECDRLQY	8	Unmodified	_LECDRLQY_					0	0	0		ENST00000521195.1_1_8:104320096-104343734:+|nuORF;nc|ENSG00000164930|O60353-2|FZD6;ENSG00000164930|ENST00000358755|FZD6	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	MSMS	A375_MHC_IP_R2	2	520.2000732421875	2	520.247492	1038.48043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.843	1	83.585	83.085	84.085	0.74205								0	0	0	0.16876	1	31475	31475		15.847	2.3393	1				29232	6893	20931	21097	28611	28611					-0.03727066705209836
LECLFRFYSY	10	Unmodified	_LECLFRFYSY_					0	0	0		nc|ENSG00000138709|Q659C4-6|LARP1B;ENST00000503725.1_1_4:129100626-129141527:+|nuORF;nc|ENSG00000138709|Q659C4-2|LARP1B;ENSG00000138709|ENST00000326639|LARP1B;nc|ENSG00000138709|Q659C4-7|LARP1B;ENST00000506199.5_1_4:129100626-129141527:+|nuORF;nc|ENSG00000138709|Q659C4-5|LARP1B;ENST00000507259.5_1_4:129099587-129143542:+|nuORF	nc|ENSG00000138709|Q659C4-6|LARP1B	nc|ENSG00000138709|Q659C4-6|LARP1B	MULTI-SECPEP	A375_MHC_IP_R1	1	671.219970703125	2	670.820824	1339.62709	-0.66785	-0.00044801	-0.82522	-0.00055357	-1.4931	-0.0010016	670.8203523937149	58.269	0.50756	58.269	58.075	58.582	0					23	9	3	0	0	0	0.78945	1	20945	20945		25.399	0	1	6753700			29233	5025	20932	21098	28612	28612					-0.029133895401173504
LECRDSCII	9	Unmodified	_LECRDSCII_					0	0	0		ENST00000578730.1_1_4:1243843-1244044:+|nuORF	ENST00000578730.1_1_4:1243843-1244044:+|nuORF	ENST00000578730.1_1_4:1243843-1244044:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	525.6596069335938	2	526.249177	1050.4838	-0.41763	-0.00021978	-0.86734	-0.00045643	-1.285	-0.00067621	526.2490542770508	101.45	0.30409	101.45	101.29	101.6	0					6	5	2	0	0	0	0.58271	1	37296	37296		14.838	0	1	465010			29234	13658	20933	21099	28613	28613					-0.039421399228558585
LECRTFNWKYL	11	Unmodified	_LECRTFNWKYL_					0	0	0			REV__ENST00000520285.5_1_5:71590560-71616015:-|nuORF	REV__ENST00000520285.5_1_5:71590560-71616015:-|nuORF	MSMS	A375_MHC_IP_R1	1	491.63494873046875	3	491.583345	1471.72821	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.803	1	28.803	28.303	29.303	0								0	0	0	0.16217	1	8933	8933		7.4291	3.8364	1		+		29235	25693	20934	21100	28614	28614					0.011210621625878048
LECRWREMEEH	11	Unmodified	_LECRWREMEEH_					0	0	0		ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;MAP4K4|p.S953Kfs*30|1|0.04|ENSG00000071054|chr2:101877028-101877029|-/AGTGGCCTGATGCTGCTGGACAGAA|frameshift_variant	ENSG00000071054|ENST00000324219|MAP4K4	ENSG00000071054|ENST00000324219|MAP4K4	MSMS	A375_MHC_IP_R2	2	759.2945556640625	2	759.334835	1516.65512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.16	1	124.49	123.99	124.99	0.32969								0	0	0	0.16297	1	47931	47931		3.2813	0	1				29236	1507	20935	21101	28615	28615					-0.08254434622335793
LECWAVEVW	9	Unmodified	_LECWAVEVW_					0	0	0			REV__ENSG00000165238|ENST00000427277|WNK2;REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	REV__ENSG00000165238|ENST00000427277|WNK2	MULTI-SECPEP	A375_MHC_IP_R1	1	378.93280029296875	3	378.847799	1133.52157	0.30786	0.00011663	3.2984	0.0012496	3.6062	0.0013662	378.8492989870079	34.606	0.20094	34.606	34.507	34.708	0					5	3	2	0	0	0	0.76452	1	11458	11458		4.897	0	1	501860	+		29237	20564;22215	20936	21102	28616	28616					-0.03985305665764827
LEDACEHLADY	11	Unmodified	_LEDACEHLADY_					0	0	0		nc|ENSG00000165995|Q08289-6|CACNB2;nc|ENSG00000165995|Q08289-10|CACNB2;nc|ENSG00000165995|Q08289-2|CACNB2;nc|ENSG00000165995|Q08289-3|CACNB2;nc|ENSG00000165995|Q08289-9|CACNB2;nc|ENSG00000165995|Q08289-5|CACNB2;nc|ENSG00000165995|Q08289-7|CACNB2;nc|ENSG00000165995|Q08289-4|CACNB2;nc|ENSG00000165995|Q08289-8|CACNB2;CACNB2|p.Y582Mfs*60|1|0.09|ENSG00000165995|chr10:18539485-18539485|T/-|frameshift_variant;ENSG00000165995|ENST00000324631|CACNB2	nc|ENSG00000165995|Q08289-6|CACNB2	nc|ENSG00000165995|Q08289-6|CACNB2	MULTI-SECPEP	A375_MHC_IP_R2	2	639.6461791992188	2	639.768985	1277.52342	-0.7727	-0.00049435	-1.1305	-0.00072326	-1.9032	-0.0012176	640.2707905275307	74.4	1.983	75.137	73.889	75.872	0.73752					56	38	2	0	0	0	0.90584	1	28190	28190		8.1555	0	1	2464000			29238	281	20937	21103	28617	28617					-0.10424341438442752
LEDACEHLADY	11	Unmodified	_LEDACEHLADY_					0	0	0		nc|ENSG00000165995|Q08289-6|CACNB2;nc|ENSG00000165995|Q08289-10|CACNB2;nc|ENSG00000165995|Q08289-2|CACNB2;nc|ENSG00000165995|Q08289-3|CACNB2;nc|ENSG00000165995|Q08289-9|CACNB2;nc|ENSG00000165995|Q08289-5|CACNB2;nc|ENSG00000165995|Q08289-7|CACNB2;nc|ENSG00000165995|Q08289-4|CACNB2;nc|ENSG00000165995|Q08289-8|CACNB2;CACNB2|p.Y582Mfs*60|1|0.09|ENSG00000165995|chr10:18539485-18539485|T/-|frameshift_variant;ENSG00000165995|ENST00000324631|CACNB2	nc|ENSG00000165995|Q08289-6|CACNB2	nc|ENSG00000165995|Q08289-6|CACNB2	MULTI-SECPEP	A375_MHC_IP_R2	2	639.0804443359375	2	639.768985	1277.52342	-0.92863	-0.00059411	-0.79785	-0.00051044	-1.7265	-0.0011045	639.7674800041992	72.089	1.3189	72.823	72.567	73.886	0.73421					33	25	2	0	0	0	0.95991	1	27375	27375		18.146	0	1	2188200			29239	281	20937	21103	28618	28618					-0.10424341438442752
LEDAGLDPHFV	11	Unmodified	_LEDAGLDPHFV_					0	0	0		ENSG00000182459|ENST00000333437|TEX19	ENSG00000182459|ENST00000333437|TEX19	ENSG00000182459|ENST00000333437|TEX19	MULTI-SECPEP	A375_MHC_IP_R1	1	607.1984252929688	2	606.798403	1211.58225	-0.093842	-5.6943E-05	-0.28028	-0.00017007	-0.37412	-0.00022702	606.7982481401868	92.893	0.66167	92.893	92.566	93.228	0					22	12	3	0	0	0	0.84606	1	34133	34133		27.629	1.3607	1	3312600			29240	8408	20938	21104	28619	28619					-0.015074970818204747
LEDATVEEIN	10	Unmodified	_LEDATVEEIN_					0	0	0			REV__nc|ENSG00000095627|Q9BXT4-4|TDRD1	REV__nc|ENSG00000095627|Q9BXT4-4|TDRD1	MSMS	A375_MHC_IP_R2	2	566.6961669921875	2	566.772051	1131.52955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.753	1	79.498	78.998	79.998	0.74474								0	0	0	0.14741	1	29894	29894		22.736	2.2827	1		+		29241	16997	20939	21105	28620	28620					-0.03095499935261614
LEDDGEFYM	9	Unmodified	_LEDDGEFYM_					0	0	0		ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1	ENSG00000099956|ENST00000644036|SMARCB1	ENSG00000099956|ENST00000644036|SMARCB1	MSMS	A375_MHC_IP_R1	1	559.7339477539062	2	559.720972	1117.42739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.891	1	96.891	96.391	97.391	0								0	0	0	0.15486	1	35604	35604		7.9102	0	1				29242	2096	20940	21106	28621	28621					-0.12662489278545763
LEDDKENRYW	10	Unmodified	_LEDDKENRYW_					0	0	0		ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	A375_MHC_IP_R2	2	456.6923522949219	3	456.545724	1366.61534	-0.37392	-0.00017071	0.86328	0.00039413	0.48936	0.00022341	456.88087128780086	36.077	0.30717	36.843	36.693	37.001	0.76682					8	5	2	0	0	0	0.93069	1	13176	13176		12.228	9.5964	1	1448400			29243	5434	20941	21107	28622	28622					-0.05329915029756194
LEDDKENRYW	10	Unmodified	_LEDDKENRYW_					0	0	0		ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MATCH	A375_MHC_IP_R1	1		3	456.545724	1366.61534	-0.45938	-0.00020973	0.6259	0.00028575	0.16651	7.6021E-05	456.54616752638356	36.825	0.30181	36.825	36.644	36.945	0	-0.009224	-4.8869E-05	NaN	12.228	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1302500			29244	5434	20941	21107							-0.05329915029756194
LEDDPKLVHS	10	Unmodified	_LEDDPKLVHS_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.Y6402Ffs*2|1|0.34|ENSG00000183091|chr2:151492486-151492487|AT/-|frameshift_variant;NEB|p.V4554Gfs*42|1|0.12|ENSG00000183091|chr2:151562738-151562739|-/CC|frameshift_variant;NEB|p.L4555Rfs*43|1|0.12|ENSG00000183091|chr2:151562736-151562737|-/CCTGCTCT|frameshift_variant;NEB|p.S2912Pfs*17|1|0.33|ENSG00000183091|chr2:151640012-151640012|A/-|frameshift_variant	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MULTI-SECPEP	A375_MHC_IP_R1	1	385.6136779785156	3	384.868027	1151.58225	0.22688	8.7318E-05	0.70772	0.00027238	0.9346	0.0003597	384.86825768893056	25.397	0.45961	25.397	25.255	25.714	0					12	8	2	0	0	0	0.92772	1	7431	7431		4.4062	1.0865	1	2272200			29245	8464	20942	21108	28623	28623					0.01252502918191567
LEDEDEEDT	9	Unmodified	_LEDEDEEDT_					0	0	0			REV__ENSG00000188037|ENST00000343257|CLCN1	REV__ENSG00000188037|ENST00000343257|CLCN1	MSMS	A375_MHC_IP_R1	1	547.7098388671875	2	547.704031	1093.39351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.083	1	99.083	98.583	99.583	0								0	0	0	0.15486	1	36400	36400		7.9102	0	1		+		29246	22067	20943	21109	28624	28624					-0.1494523923659017
LEDEDISKY	9	Unmodified	_LEDEDISKY_					0	0	0			REV__LMOD2|p.E14K|1|0.54|ENSG00000170807|chr7:123656003-123656003|G/A|missense_variant	REV__LMOD2|p.E14K|1|0.54|ENSG00000170807|chr7:123656003-123656003|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	556.6608276367188	2	556.261319	1110.50808	-0.50219	-0.00027935	0.23557	0.00013104	-0.26661	-0.00014831	556.2613375401919	31.552	0.45677	31.552	31.312	31.769	0					25	8	4	0	0	0	0.047602	1	10093	10093		65.235	0	1	8713400	+		29247	26934	20944	21110	28625	28625					-0.042748849640020126
LEDEGLIICY	10	Unmodified	_LEDEGLIICY_					0	0	0			REV__tr|U7SXD8|U7SXD8_FUSNUHistidine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hisSPE=3SV=1	REV__tr|U7SXD8|U7SXD8_FUSNUHistidine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hisSPE=3SV=1	MSMS	A375_MHC_IP_R1	1	584.1321411132812	2	584.28374	1166.55293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.497	1	96.497	95.997	96.997	0								0	0	0	0.15207	1	35463	35463		13.906	4.5229	1		+		29248	28621	20945	21111	28626	28626					-0.02368777422293533
LEDEPFGEPY	10	Unmodified	_LEDEPFGEPY_					0	0	0			REV__ENSG00000163814|ENST00000296129|CDCP1	REV__ENSG00000163814|ENST00000296129|CDCP1	MSMS	A375_MHC_IP_R2	2	598.3219604492188	2	598.261319	1194.50808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.485	1	75.222	74.722	75.722	0.73752								0	0	0	0.15308	1	28273	28273		10.824	2.9138	1		+		29249	20416	20946	21112	28627	28627					-0.08138884963977944
LEDETQQQEE	10	Unmodified	_LEDETQQQEE_					0	0	0			REV__CON__P02666	REV__CON__P02666	MSMS	A375_MHC_IP_R1	1	624.6780395507812	2	624.764954	1247.51536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.092	1	69.092	68.592	69.592	0								0	0	0	0.15435	1	25066	25066		6.7232	0	1		+	+	29250	15854	20947	21113	28628	28628					-0.09850197154196394
LEDFDNEMW	9	Unmodified	_LEDFDNEMW_					0	0	0			REV__nc|ENSG1000|Q9UN81|L1_ORF1	REV__nc|ENSG1000|Q9UN81|L1_ORF1	MULTI-SECPEP	A375_MHC_IP_R1	1	599.2108154296875	2	599.739696	1197.46484	-0.30406	-0.00018236	-1.0755	-0.00064504	-1.3796	-0.0008274	599.7393410167714	81.849	0.20335	81.849	81.707	81.911	0					5	3	2	0	0	0	0.78348	1	29915	29915		7.9102	6.9479	1	748470	+		29251	27567	20948	21114	28629	28629					-0.12599398012935126
LEDFEMLSFWL	11	Unmodified	_LEDFEMLSFWL_					0	0	0		ENSG00000128833|ENST00000261839|MYO5C	ENSG00000128833|ENST00000261839|MYO5C	ENSG00000128833|ENST00000261839|MYO5C	MULTI-MSMS	A375_MHC_IP_R1	1	477.62896728515625	3	477.228456	1428.66354	-0.48211	-0.00023008	1.3593	0.00064871	0.87722	0.00041863	477.2296298608756	59.524	0.55855	59.524	59.295	59.854	0					18	10	2	0	0	0	0.73439	1	21441	21441		4.7159	0.30977	1	2546700			29252	4166	20949	21115	28630	28630					-0.03364557434088056
LEDFGPRYYS	10	Unmodified	_LEDFGPRYYS_					0	0	0		ENSG00000247626|ENST00000282276|MARS2	ENSG00000247626|ENST00000282276|MARS2	ENSG00000247626|ENST00000282276|MARS2	MULTI-MSMS	A375_MHC_IP_R2	2	416.5960998535156	3	416.196144	1245.5666	-0.41962	-0.00017464	0.23055	9.5952E-05	-0.18907	-7.869E-05	416.19625591665175	59.501	0.45395	60.248	59.996	60.45	0.74714					18	8	3	0	0	0	0.69306	1	22517	22517		8.4443	0	1	2023700			29253	9830	20950	21116	28631	28631					-0.04635783598837406
LEDFGPRYYS	10	Unmodified	_LEDFGPRYYS_					0	0	0		ENSG00000247626|ENST00000282276|MARS2	ENSG00000247626|ENST00000282276|MARS2	ENSG00000247626|ENST00000282276|MARS2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	416.196144	1245.5666	0.26324	0.00010956	0.038296	1.5939E-05	0.30154	0.0001255	416.19616520542803	60.408	0.45712	60.408	60.109	60.566	0	0.079637	-0.00013187	NaN	8.4443	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1550500			29254	9830	20950	21116							-0.04635783598837406
LEDGLWSLS	9	Unmodified	_LEDGLWSLS_					0	0	0		PAPPA2|p.P1517S|1|0.38|ENSG00000116183|chr1:176771014-176771014|C/T|missense_variant	PAPPA2|p.P1517S|1|0.38|ENSG00000116183|chr1:176771014-176771014|C/T|missense_variant	PAPPA2|p.P1517S|1|0.38|ENSG00000116183|chr1:176771014-176771014|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	509.706298828125	2	510.25584	1018.49713	-0.47943	-0.00024463	-0.34927	-0.00017822	-0.8287	-0.00042285	510.25554229495145	128.93	0.20502	128.93	128.84	129.04	0					5	3	2	0	0	0	0.3607	1	49515	49515		34.102	3.4659	1	3651700			29255	15108	20951	21117	28632	28632					-0.0113824254760857
LEDGLWSLS	9	Unmodified	_LEDGLWSLS_					0	0	0		PAPPA2|p.P1517S|1|0.38|ENSG00000116183|chr1:176771014-176771014|C/T|missense_variant	PAPPA2|p.P1517S|1|0.38|ENSG00000116183|chr1:176771014-176771014|C/T|missense_variant	PAPPA2|p.P1517S|1|0.38|ENSG00000116183|chr1:176771014-176771014|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	509.70489501953125	2	510.25584	1018.49713	-0.80964	-0.00041312	0.19163	9.7781E-05	-0.61801	-0.00031534	510.25569407284434	128.74	0.25116	128.98	128.81	129.06	0.23946					6	4	2	0	0	0	0.3607	1	50516	50516		26.884	17.536	1	3848300			29256	15108	20951	21117	28633	28633					-0.0113824254760857
LEDGRTLSDY	10	Unmodified	_LEDGRTLSDY_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000143947|ENST00000272317|RPS27A;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;ENST00000399822.2_1_9:22012279-22012411:+|nuORF;ENST00000597285.1_1_19:7730614-7730836:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-SECPEP	A375_MHC_IP_R1	1	584.6149291992188	2	584.777667	1167.54078	-0.33191	-0.0001941	0.45698	0.00026723	0.12506	7.3134E-05	584.7782661916193	40.142	0.3064	40.142	39.948	40.254	0					7	5	2	0	0	0	0.63289	1	13781	13781		40.725	15.734	1	855140			29257	9678	20952	21118	28634	28634					-0.03628677841129502
LEDGTCLTINY	11	Unmodified	_LEDGTCLTINY_					0	0	0			REV__nc|ENSG00000141441|Q9H706-2|GAREM1	REV__nc|ENSG00000141441|Q9H706-2|GAREM1	MULTI-SECPEP	A375_MHC_IP_R1	1	415.1297607421875	3	414.528794	1240.56455	0.36441	0.00015106	-0.79512	-0.0003296	-0.43071	-0.00017854	414.5285005552634	25.179	0.40681	25.179	25.053	25.46	0					12	7	2	0	0	0	0.98591	1	7316	7316		4.7159	0	1	4363700	+		29258	19265	20953	21119	28635	28635					-0.04610580398957609
LEDHKMCW	8	Unmodified	_LEDHKMCW_					0	0	0			REV__ENSG00000143624|ENST00000318967|INTS3	REV__ENSG00000143624|ENST00000318967|INTS3	MSMS	A375_MHC_IP_R1	1	531.150634765625	2	531.230787	1060.44702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71	1	71	70.5	71.5	0								0	0	0	0.16876	1	25788	25788		13.508	4.1604	1		+		29259	19374	20954	21120	28636	28636					-0.08078391748790636
LEDIVELKV	9	Unmodified	_LEDIVELKV_					0	0	0			REV__tr|U7SWW0|U7SWW0_FUSNU8-oxoguanineDNAglycosylase/APlyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=oggPE=3SV=1	REV__tr|U7SWW0|U7SWW0_FUSNU8-oxoguanineDNAglycosylase/APlyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=oggPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	529.1369018554688	2	529.310615	1056.60668	-0.73128	-0.00038707	-0.30812	-0.00016309	-1.0394	-0.00055016	529.3104491555678	66.249	0.3555	66.249	66.072	66.428	0					9	6	2	0	0	0	0.50702	1	24031	24031		25.399	0	1	1411000	+		29260	28611	20955	21121	28637	28637					0.08063763071709218
LEDLEQSGW	9	Unmodified	_LEDLEQSGW_					0	0	0			REV__ENST00000536459.6_1_19:58985107-58985197:+|nuORF	REV__ENST00000536459.6_1_19:58985107-58985197:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	539.1475219726562	2	538.748379	1075.4822	-0.80328	-0.00043277	-0.061711	-3.3247E-05	-0.865	-0.00046601	538.7483020644871	70.339	0.35629	71.074	70.793	71.149	0.73421					11	6	2	0	0	0	0.75466	1	26642	26642		12.532	1.4171	1	2004300	+		29261	25913	20956	21122	28638	28638					-0.05251734415628562
LEDLGCTGNNY	11	Unmodified	_LEDLGCTGNNY_					0	0	0		chr12:55957059-55958473|153|282.08|0.0|24.75|-|1|PMEL,PMEL|1	chr12:55957059-55958473|153|282.08|0.0|24.75|-|1|PMEL,PMEL|1	chr12:55957059-55958473|153|282.08|0.0|24.75|-|1|PMEL,PMEL|1	MSMS	A375_MHC_IP_R2	2	599.69921875	2	599.755878	1197.4972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.586	1	82.329	81.829	82.829	0.74293								0	0	0	0.16191	1	30985	30985		8.7454	1.4562	1				29262	418	20957	21123	28639	28639					-0.09364610609895863
LEDLIFESL	9	Unmodified	_LEDLIFESL_					0	0	0		nc|ENSG00000107669|O95260-2|ATE1;ENSG00000107669|ENST00000224652|ATE1	nc|ENSG00000107669|O95260-2|ATE1	nc|ENSG00000107669|O95260-2|ATE1	MULTI-SECPEP	A375_MHC_IP_R1	1	539.9488525390625	2	539.786973	1077.55939	-0.64566	-0.00034852	0.93527	0.00050484	0.2896	0.00015632	540.2905722657542	74.507	0.30462	74.507	74.349	74.653	0					7	5	2	0	0	0	0.71541	1	27120	27120		11.64	0.81637	1	1014200			29263	2748	20958	21124	28640	28640					0.023714838007208527
LEDLNLESAKS	11	Unmodified	_LEDLNLESAKS_					0	0	0			REV__ENSG00000172469|ENST00000358812|MANEA	REV__ENSG00000172469|ENST00000358812|MANEA	MSMS	A375_MHC_IP_R2	2	406.94354248046875	3	406.878592	1217.61395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.835	1	65.573	65.073	66.073	0.73811								0	0	0	0.16209	1	24581	24581		7.846	4.0001	1		+		29264	21146	20959	21125	28641	28641					0.013844508814599976
LEDLWNLF	8	Unmodified	_LEDLWNLF_					0	0	0		ENST00000313219.8_1_8:23104049-23104106:+|nuORF	ENST00000313219.8_1_8:23104049-23104106:+|nuORF	ENST00000313219.8_1_8:23104049-23104106:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	525.6685180664062	2	525.26875	1048.52295	-0.40746	-0.00021402	-0.64509	-0.00033885	-1.0525	-0.00055287	525.2683941088353	78.917	0.50903	79.662	79.387	79.896	0.74474					16	9	2	0	0	0	0.69583	1	29958	29958		36.044	0	1	2684400			29265	10641	20960	21126	28642	28642					0.00062651694656779
LEDMTSYQY	9	Unmodified	_LEDMTSYQY_					0	0	0			REV__NDRG3|p.P111S|1|0.41|ENSG00000101079|chr20:36684465-36684465|G/A|missense_variant	REV__NDRG3|p.P111S|1|0.41|ENSG00000101079|chr20:36684465-36684465|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	575.6417846679688	2	575.242072	1148.46959	-0.28123	-0.00016178	-0.40251	-0.00023154	-0.68374	-0.00039331	575.2419623674856	65.103	0.45683	65.841	65.715	66.172	0.73812					15	8	2	0	0	0	0.46038	1	24770	24770		21.747	2.4897	1	1214900	+		29266	27585	20961	21127	28643	28643					-0.09870513870146169
LEDNDKYQQFR	11	Unmodified	_LEDNDKYQQFR_					0	0	0		ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant;ANK2|p.D3531Ffs*6|1|0.05|ENSG00000145362|chr4:113359207-113359208|-/ATTCTAT|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2	ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant	ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	728.7466430664062	2	728.34678	1454.67901	-0.55519	-0.00040437	-0.19572	-0.00014255	-0.75091	-0.00054692	728.3466624233928	74.933	0.60834	74.933	74.502	75.11	0					19	11	2	0	0	0	0.72801	1	27322	27322		10.8	0	1	2126500			29267	132	20962	21128	28644	28644					-0.030145545927098283
LEDNDKYQQFR	11	Unmodified	_LEDNDKYQQFR_					0	0	0		ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant;ANK2|p.D3531Ffs*6|1|0.05|ENSG00000145362|chr4:113359207-113359208|-/ATTCTAT|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2	ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant	ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	728.74609375	2	728.34678	1454.67901	-0.57787	-0.00042089	0.36708	0.00026736	-0.21078	-0.00015352	728.3470557177643	75.76	0.40228	75.76	75.564	75.966	0					14	7	3	0	0	0	0.71476	1	27627	27627		14.405	3.6059	1	2847800			29268	132	20962	21128	28645	28645					-0.030145545927098283
LEDNDKYQQFR	11	Unmodified	_LEDNDKYQQFR_					0	0	0		ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant;ANK2|p.D3531Ffs*6|1|0.05|ENSG00000145362|chr4:113359207-113359208|-/ATTCTAT|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2	ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant	ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	728.34678	1454.67901	-0.84503	-0.00061547	-0.90849	-0.0006617	-1.7535	-0.0012772	728.3461135334788	75.143	0.45361	75.88	75.57	76.023	0.73752	0.060034	-0.001396	NaN	14.405	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2120100			29269	132	20962	21128							-0.030145545927098283
LEDNHSYI	8	Unmodified	_LEDNHSYI_					0	0	0		nc|ENSG00000060491|Q9NZT2-2|OGFR;ENSG00000060491|ENST00000290291|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	MULTI-MSMS	A375_MHC_IP_R1	1	496.1299743652344	2	495.729989	989.445425	-0.29555	-0.00014651	-0.89644	-0.00044439	-1.192	-0.00059091	495.72975502988794	92.033	1.5697	92.033	91.148	92.718	0					43	30	2	0	0	0	0.7479	1	33796	33796		20.871	3.9289	1	2532200			29270	1310	20963	21129	28646	28646					-0.049719862415145144
LEDNREWY	8	Unmodified	_LEDNREWY_					0	0	0		ENSG00000113448|ENST00000340635|PDE4D;nc|ENSG00000113448|Q08499-5|PDE4D;nc|ENSG00000113448|Q08499-8|PDE4D;nc|ENSG00000113448|Q08499-4|PDE4D;nc|ENSG00000113448|Q08499-3|PDE4D;nc|ENSG00000113448|Q08499-2|PDE4D;nc|ENSG00000113448|Q08499-10|PDE4D;nc|ENSG00000113448|Q08499-9|PDE4D;nc|ENSG00000113448|Q08499-6|PDE4D;nc|ENSG00000285188|Q08493-2|PDE4C;ENSG00000105650|ENST00000262805|PDE4C;nc|ENSG00000113448|Q08499-11|PDE4D;nc|ENSG00000285188|Q08493|PDE4C	ENSG00000113448|ENST00000340635|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D;nc|ENSG00000285188|Q08493|PDE4C	ENSG00000113448|ENST00000340635|PDE4D	MSMS	A375_MHC_IP_R1	1	562.7032470703125	2	562.753995	1123.49344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.899	1	75.899	75.399	76.399	0								0	0	0	0.16876	1	27657	27657		16.942	2.3606	1				29271	3152;14554;14946	20964	21130	28647	28647					-0.06336912321489763
LEDNRHQF	8	Unmodified	_LEDNRHQF_					0	0	0			REV__ENSG00000134709|ENST00000371208|HOOK1	REV__ENSG00000134709|ENST00000371208|HOOK1	MSMS	A375_MHC_IP_R2	2	529.6633911132812	2	529.75433	1057.49411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.415	1	100.18	99.675	100.68	0.75977								0	0	0	0.16876	1	37711	37711		9.3474	0	1		+		29272	18794	20965	21131	28648	28648					-0.03234072881764405
LEDPDGKVLY	10	Unmodified	_LEDPDGKVLY_					0	0	0		ENST00000503010.1_1_5:114951908-114961566:-|nuORF;ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2;nc|ENSG00000134970|Q9Y3B3-2|TMED7	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	575.1952514648438	2	574.795329	1147.5761	-0.27376	-0.00015736	0.083699	4.811E-05	-0.19006	-0.00010925	574.795342563339	53.306	0.65868	53.306	53.048	53.707	0					20	12	2	0	0	0	0.012014	1	18970	18970		91.085	49.245	1	7016300			29273	4631	20966	21132	28649	28649					0.008219846866722946
LEDPDGKVLY	10	Unmodified	_LEDPDGKVLY_					0	0	0		ENST00000503010.1_1_5:114951908-114961566:-|nuORF;ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2;nc|ENSG00000134970|Q9Y3B3-2|TMED7	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	575.1953125	2	574.795329	1147.5761	-0.67676	-0.000389	0.2201	0.00012651	-0.45667	-0.00026249	574.795353725952	52.612	0.70814	53.365	53.083	53.791	0.75225					26	13	3	0	0	0	0.37062	1	19824	19824		78.06	38.111	1	6682100			29274	4631	20966	21132	28650	28650					0.008219846866722946
LEDPEGVKRF	10	Unmodified	_LEDPEGVKRF_					0	0	0		nc|ENSG00000148908|O43665-2|RGS10;nc|ENSG00000148908|O43665-1|RGS10;ENSG00000148908|ENST00000369103|RGS10	nc|ENSG00000148908|O43665-2|RGS10	nc|ENSG00000148908|O43665-2|RGS10	MULTI-MSMS	A375_MHC_IP_R1	1	397.61163330078125	3	397.211906	1188.61389	-0.062431	-2.4799E-05	1.3397	0.00053216	1.2773	0.00050736	397.211906669526	33.739	0.65897	33.739	33.342	34.001	0					28	12	4	0	0	0	0.13045	1	11055	11055		57.108	40.059	1	7425700			29275	5773	20967	21133	28651	28651					0.02712495672130899
LEDPEGVKRF	10	Unmodified	_LEDPEGVKRF_					0	0	0		nc|ENSG00000148908|O43665-2|RGS10;nc|ENSG00000148908|O43665-1|RGS10;ENSG00000148908|ENST00000369103|RGS10	nc|ENSG00000148908|O43665-2|RGS10	nc|ENSG00000148908|O43665-2|RGS10	MULTI-MSMS	A375_MHC_IP_R2	2	397.61187744140625	3	397.211906	1188.61389	-0.19378	-7.6971E-05	0.53499	0.0002125	0.34121	0.00013553	397.21206137397223	32.987	0.81395	33.724	33.265	34.079	0.73691					37	15	4	0	0	0	0.46263	1	11801	11801		30.431	16.261	1	3254600			29276	5773	20967	21133	28652	28652					0.02712495672130899
LEDPREKHF	9	Unmodified	_LEDPREKHF_					0	0	0		ENSG00000196664|ENST00000380659|TLR7	ENSG00000196664|ENST00000380659|TLR7	ENSG00000196664|ENST00000380659|TLR7	MSMS	A375_MHC_IP_R2	2	585.6959838867188	2	585.798737	1169.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.327	1	75.064	74.564	75.564	0.73752								0	0	0	0.14767	1	28214	28214		25.399	1.3787	1				29277	9073	20968	21134	28653	28653					0.0049134235789551894
LEDPRRKRRRW	11	Unmodified	_LEDPRRKRRRW_					0	0	0		ENST00000308893.8_1_16:29985169-29989140:+|nuORF	ENST00000308893.8_1_16:29985169-29989140:+|nuORF	ENST00000308893.8_1_16:29985169-29989140:+|nuORF	MSMS	A375_MHC_IP_R2	2	784.853515625	2	784.455656	1566.89676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.04	1	100.8	100.3	101.3	0.76278								0	0	0	0.16353	1	37939	37939		0.35063	0.081612	1				29278	10605	20969	21135	28654	28654					0.13598724911093996
LEDQISYL	8	Unmodified	_LEDQISYL_					0	0	0		ENST00000431657.5_1_3:44409097-44442080:+|nuORF;nc|ENSG00000179152|Q8N3R3-4|TCAIM;ENSG00000179152|ENST00000342649|TCAIM	ENST00000431657.5_1_3:44409097-44442080:+|nuORF	ENST00000431657.5_1_3:44409097-44442080:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	981.477294921875	1	980.493504	979.486227	-0.064098	-6.2848E-05	-2.0945	-0.0020536	-2.1586	-0.0021165	980.4927907150025	128.81	0.80869	129.05	128.76	129.57	0.23946					21	15	2	0	0	0	0.76654	1	50474	50474		15.847	4.2069	1	29561000			29279	8210	20970	21136	28655	28655					-0.004336449219067617
LEDQTVTEF	9	Unmodified	_LEDQTVTEF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;TTN|p.L14011*|1|0.26|ENSG00000155657|chr2:178618595-178618595|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R1	1	541.1535034179688	2	541.256037	1080.49752	-0.83343	-0.0004511	-1.1912	-0.00064472	-2.0246	-0.0010958	541.2555297227741	90.58	0.65964	90.58	90.083	90.742	0					16	12	2	0	0	0	0.64808	1	33289	33289		11.64	0	1	1200700			29280	6151;14694	20971	21137	28656	28656					-0.03950867618414122
LEDRFLRL	8	Unmodified	_LEDRFLRL_					0	0	0		RPGRIP1L|p.I1149Ffs*6|1|0.8|ENSG00000103494|chr16:53619196-53619196|T/-|frameshift_variant;nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L	RPGRIP1L|p.I1149Ffs*6|1|0.8|ENSG00000103494|chr16:53619196-53619196|T/-|frameshift_variant	RPGRIP1L|p.I1149Ffs*6|1|0.8|ENSG00000103494|chr16:53619196-53619196|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	531.7093505859375	2	531.308741	1060.60293	-0.40724	-0.00021637	3.1316	0.0016639	2.7244	0.0014475	531.3102250010757	127.96	0.70667	127.96	127.87	128.58	0					16	13	2	0	0	0	0.96266	1	49133	49133		11.64	5.8799	1	17964000			29281	2455	20972	21138	28657	28657					0.07505138088527019
LEDRWKSLRQQ	11	Unmodified	_LEDRWKSLRQQ_					0	0	0		nc|ENSG00000129646|Q9H0J4|QRICH2;ENSG00000129646|ENST00000680821|QRICH2;nc|ENSG00000129646|Q9H0J4-3|QRICH2;ENST00000524722.1_2_17:74270319-74300575:-|nuORF	nc|ENSG00000129646|Q9H0J4|QRICH2	nc|ENSG00000129646|Q9H0J4|QRICH2	MSMS	A375_MHC_IP_R1	1	730.097412109375	2	729.894232	1457.77391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.49	1	83.49	82.99	83.99	0								0	0	0	0.16302	1	30551	30551		2.9952	0	1				29282	4202	20973	21139	28658	28658					0.06333423669184413
LEDSRYNWSFI	11	Unmodified	_LEDSRYNWSFI_					0	0	0		nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN	nc|ENSG00000088812|O75882-3|ATRN	nc|ENSG00000088812|O75882-3|ATRN	MULTI-MSMS	A375_MHC_IP_R2	2	477.62823486328125	3	477.229736	1428.66738	-0.90645	-0.00043258	-1.9501	-0.00093063	-2.8565	-0.0013632	477.22952207623973	58.859	0.71079	59.606	59.336	60.047	0.74714					24	13	3	0	0	0	0.69069	1	22258	22258		16.275	2.7559	1	3017100			29283	1897	20974	21140	28659	28659					-0.029807516160190062
LEDTLHCKI	9	Unmodified	_LEDTLHCKI_					0	0	0		ENSG00000173572|ENST00000342929|NLRP13	ENSG00000173572|ENST00000342929|NLRP13	ENSG00000173572|ENST00000342929|NLRP13	MULTI-SECPEP	A375_MHC_IP_R2	2	358.2546691894531	3	357.854953	1070.54303	-0.313	-0.00011201	0.51165	0.0001831	0.19865	7.1087E-05	357.8550455177062	70.908	0.70906	71.642	71.352	72.061	0.73421					25	13	3	0	0	0	0.75466	1	26866	26866		2.4985	0.59211	1	5997000			29284	7810	20975	21141	28660	28660					0.010580793629742402
LEDTVLFPEG	10	Unmodified	_LEDTVLFPEG_					0	0	0		ENSG00000266967|ENST00000427569|AARSD1;nc|ENSG00000266967|Q9BTE6-2|AARSD1;nc|ENSG00000266967|Q9BTE6-3|AARSD1;ENST00000416949.5_1_17:41109156-41116489:-|nuORF;ENST00000441280.7_1_17:41108193-41116457:-|nuORF	ENSG00000266967|ENST00000427569|AARSD1;ENST00000441280.7_1_17:41108193-41116457:-|nuORF	ENSG00000266967|ENST00000427569|AARSD1	MULTI-SECPEP	A375_MHC_IP_R1	1	559.6468505859375	2	560.282054	1118.54956	-0.60864	-0.00034101	-3.9113	-0.0021915	-4.52	-0.0025325	560.7807220068219	90.006	0.55709	90.006	89.88	90.437	0					15	10	2	0	0	0	0.78945	1	33081	33081		13.906	2.2658	1	3571000			29285	9963;11982	20976	21142	28661	28661					-0.004977042046675706
LEDYQGSAKAF	11	Unmodified	_LEDYQGSAKAF_					0	0	0		ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	MULTI-SECPEP	A375_MHC_IP_R2	2	615.1959228515625	2	614.79586	1227.57717	-0.50877	-0.00031279	-0.36575	-0.00022486	-0.87452	-0.00053765	614.7955957125723	92.143	0.70836	92.882	92.432	93.14	0.73902					20	13	2	0	0	0	0.82939	1	35021	35021		29.841	6.0508	1	4002000			29286	1049	20977	21143	28662	28662					-0.027518009444293057
LEDYQGSAKAF	11	Unmodified	_LEDYQGSAKAF_					0	0	0		ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	MULTI-MATCH	A375_MHC_IP_R1	1		2	614.79586	1227.57717	-0.10737	-6.6009E-05	-0.52934	-0.00032544	-0.63671	-0.00039145	614.7954895132199	92.83	0.81483	92.83	92.566	93.381	0	-0.025895	-9.4032E-05	NaN	29.841	26	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2840100			29287	1049	20977	21143							-0.027518009444293057
LEEAAFLRL	9	Unmodified	_LEEAAFLRL_					0	0	0		tr|U7ST53|U7ST53_FUSNUProbablecelldivisionproteinWhiAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=whiAPE=3SV=1	tr|U7ST53|U7ST53_FUSNUProbablecelldivisionproteinWhiAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=whiAPE=3SV=1	tr|U7ST53|U7ST53_FUSNUProbablecelldivisionproteinWhiAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=whiAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	532.7054443359375	2	531.303124	1060.5917	-0.58819	-0.00031251	-1.3717	-0.00072879	-1.9599	-0.0010413	531.3019651182087	101.76	1.8805	102.52	101.8	103.68	0.76428					76	36	4	0	0	0	0.58047	1	38524	38524		15.847	1.9411	1	13922000			29288	29659	20978	21144	28663	28663					0.06382315994369492
LEEAWQPRNN	10	Unmodified	_LEEAWQPRNN_					0	0	0		ENSG00000166682|ENST00000299882|TMPRSS5	ENSG00000166682|ENST00000299882|TMPRSS5	ENSG00000166682|ENST00000299882|TMPRSS5	MSMS	A375_MHC_IP_R1	1	628.8042602539062	2	628.804551	1255.59455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.8	1	122.8	122.3	123.3	0								0	0	0	0.15435	1	45768	45768		6.7232	0	1				29289	7101	20979	21145	28664	28664					-0.0230246061876187
LEECYVVCV	9	Unmodified	_LEECYVVCV_					0	0	0			REV__nc|ENSG00000173809|Q587J7-2|TDRD12	REV__nc|ENSG00000173809|Q587J7-2|TDRD12	MULTI-SECPEP	A375_MHC_IP_R1	1	528.6525268554688	2	528.740654	1055.46675	-0.59612	-0.00031519	-0.17425	-9.2132E-05	-0.77037	-0.00040732	528.7406164347894	58.861	0.3564	58.861	58.685	59.041	0					9	6	2	0	0	0	0.71541	1	21117	21117		3.9444	0	1	1351200	+		29290	15730	20980	21146	28665	28665					-0.05876060528680682
LEEDHLGFL	9	Unmodified	_LEEDHLGFL_					0	0	0		ENST00000301887.8_1_11:64755941-64756001:-|nuORF	ENST00000301887.8_1_11:64755941-64756001:-|nuORF	ENST00000301887.8_1_11:64755941-64756001:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	537.16845703125	2	536.769114	1071.52368	-0.85428	-0.00045855	-0.10436	-5.6018E-05	-0.95864	-0.00051457	536.7692169507542	73.688	1.0194	74.424	74.141	75.161	0.7354					29	19	2	0	0	0	0.55359	1	28011	28011		21.747	4.8044	1	2538400			29291	10548	20981	21147	28666	28666					-0.00922553656278069
LEEDHLGFL	9	Unmodified	_LEEDHLGFL_					0	0	0		ENST00000301887.8_1_11:64755941-64756001:-|nuORF	ENST00000301887.8_1_11:64755941-64756001:-|nuORF	ENST00000301887.8_1_11:64755941-64756001:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	536.769114	1071.52368	-0.70293	-0.00037731	-0.0254	-1.3634E-05	-0.72833	-0.00039094	536.769339779651	74.551	0.76149	74.551	74.146	74.908	0	0.063771	3.6089E-05	NaN	21.747	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3031600			29292	10548	20981	21147							-0.00922553656278069
LEEDHRALI	9	Unmodified	_LEEDHRALI_					0	0	0		nc|ENSG00000175699|Q8NCU1|CCDC197	nc|ENSG00000175699|Q8NCU1|CCDC197	nc|ENSG00000175699|Q8NCU1|CCDC197	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6907958984375	2	548.293288	1094.57202	-0.58447	-0.00032046	-1.2617	-0.00069176	-1.8461	-0.0010122	548.2924758028671	100.42	1.0728	101.18	100.57	101.65	0.76278					52	20	3	0	0	0	0.39388	1	38166	38166		39.957	1.9833	1	12983000			29293	14779	20982	21148	28667	28667					0.028519399836113735
LEEDMESEV	9	Unmodified	_LEEDMESEV_					0	0	0			REV__ENSG00000080298|ENST00000617270|RFX3	REV__ENSG00000080298|ENST00000617270|RFX3	MSMS	A375_MHC_IP_R2	2	540.7078857421875	2	540.723712	1079.43287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.872	1	85.608	85.108	86.108	0.73601								0	0	0	0.15486	1	32265	32265		7.9102	0	1		+		29294	16746	20983	21149	28668	28668					-0.10366810486721079
LEEDWIREY	9	Unmodified	_LEEDWIREY_					0	0	0		ENST00000510666.1_1_5:68840710-68849495:+|nuORF;nc|ENSG00000197822|Q16625-5|OCLN;nc|ENSG00000197822|Q16625-4|OCLN;nc|ENSG00000197822|Q16625-2|OCLN;nc|ENSG00000197822|Q16625-3|OCLN;ENSG00000197822|ENST00000396442|OCLN	ENST00000510666.1_1_5:68840710-68849495:+|nuORF	ENST00000510666.1_1_5:68840710-68849495:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	627.89208984375	2	626.79586	1251.57717	-0.80349	-0.00050362	0.19551	0.00012255	-0.60798	-0.00038108	626.7959589360696	108.29	1.5316	109.05	108.46	109.99	0.75436					59	25	4	0	0	0	0.68216	1	40977	40977		8.5933	1.304	1	9470000			29295	9198	20984	21150	28669	28669					-0.038558009444159325
LEEEAESHF	9	Unmodified	_LEEEAESHF_					0	0	0			REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2	REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MULTI-SECPEP	A375_MHC_IP_R2	2	546.1370239257812	2	545.738011	1089.46147	-1.1658	-0.00063623	-0.81362	-0.00044403	-1.9794	-0.0010803	545.7379213005513	59.749	0.96033	60.496	59.996	60.957	0.74714					31	18	2	0	0	0	0.50702	1	22612	22612		25.399	9.5521	1	3092700	+		29296	17302	20985	21151	28670	28670					-0.07968324795274384
LEEEAHNF	8	Unmodified	_LEEEAHNF_					0	0	0		VEZT|p.S315L|1|0.43|ENSG00000028203|chr12:95274837-95274837|C/T|missense_variant	VEZT|p.S315L|1|0.43|ENSG00000028203|chr12:95274837-95274837|C/T|missense_variant	VEZT|p.S315L|1|0.43|ENSG00000028203|chr12:95274837-95274837|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	495.1743469238281	2	494.722164	987.429775	-0.49925	-0.00024699	0.41137	0.00020351	-0.08788	-4.3476E-05	494.72211370238927	31.742	0.30453	32.479	32.3	32.605	0.73691					8	5	2	0	0	0	0.7338	1	11252	11252		24.674	1.9376	1	1291100			29297	30138	20986	21152	28671	28671					-0.06444272758562875
LEEEAHNFT	9	Unmodified	_LEEEAHNFT_					0	0	0		VEZT|p.S315L|1|0.43|ENSG00000028203|chr12:95274837-95274837|C/T|missense_variant	VEZT|p.S315L|1|0.43|ENSG00000028203|chr12:95274837-95274837|C/T|missense_variant	VEZT|p.S315L|1|0.43|ENSG00000028203|chr12:95274837-95274837|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	545.6456298828125	2	545.246003	1088.47745	-0.56084	-0.0003058	-0.3726	-0.00020316	-0.93344	-0.00050895	545.2457464345329	60.552	0.45795	60.552	60.363	60.821	0					19	8	3	0	0	0	0.71541	1	21844	21844		3.9444	0	1	3782800			29298	30138	20987	21153	28672	28672					-0.06324618558369366
LEEECSYW	8	Unmodified	_LEEECSYW_					0	0	0			REV__nc|ENSG00000169181|Q6UXU4-3|GSG1L	REV__nc|ENSG00000169181|Q6UXU4-3|GSG1L	MULTI-SECPEP	A375_MHC_IP_R2	2	530.209228515625	2	529.710408	1057.40626	-0.54816	-0.00029036	3.8086	0.0020174	3.2604	0.0017271	529.7118546079649	83.444	0.61047	84.184	83.898	84.508	0.73962					16	11	3	0	0	0	0.94479	1	31642	31642		13.508	1.8676	1	1113800	+		29299	20915	20988	21154	28673	28673					-0.1201445458739272
LEEEETIEF	9	Unmodified	_LEEEETIEF_					0	0	0		ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	MULTI-SECPEP	A375_MHC_IP_R2	2	570.1723022460938	2	569.761152	1137.50775	-0.40177	-0.00022891	0.55298	0.00031507	0.15121	8.6156E-05	569.7613165832803	55.482	0.45615	56.233	56.084	56.54	0.75075					9	6	2	0	0	0	0.58271	1	21038	21038		20.454	20.454	1	1040800			29300	9456	20989	21155	28674	28674					-0.05550304683833929
LEEEIIAYE	9	Unmodified	_LEEEIIAYE_					0	0	0		nc|ENSG00000118557|Q8TBY8-4|PMFBP1;ENSG00000118557|ENST00000237353|PMFBP1;nc|ENSG00000118557|Q8TBY8-1|PMFBP1;nc|ENSG00000118557|Q8TBY8-3|PMFBP1	nc|ENSG00000118557|Q8TBY8-4|PMFBP1	nc|ENSG00000118557|Q8TBY8-4|PMFBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1742553710938	2	554.774062	1107.53357	-1.0529	-0.00058411	1.1653	0.00064648	0.11244	6.2376E-05	554.7749024390754	58.174	0.45593	58.923	58.679	59.135	0.74894					13	8	2	0	0	0	0.50702	1	22035	22035		13.906	0	1	1236900			29301	3552	20990	21156	28675	28675					-0.01589410441556538
LEEELKKHL	9	Unmodified	_LEEELKKHL_					0	0	0			REV__SH2D3C|p.E203K|1|0.42|ENSG00000095370|chr9:127751249-127751249|C/T|missense_variant	REV__SH2D3C|p.E203K|1|0.42|ENSG00000095370|chr9:127751249-127751249|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	380.6204528808594	3	380.220401	1137.63937	0.08899	3.3836E-05	-0.15606	-5.9338E-05	-0.067071	-2.5502E-05	380.2202514947608	27.292	0.30638	27.971	27.792	28.098	0.67857					9	5	2	0	0	0	0.54799	1	9340	9340		17.443	5.2679	1	3985100	+		29302	27957	20991	21157	28676	28676					0.07605970194572365
LEEELKKHL	9	Unmodified	_LEEELKKHL_					0	0	0			REV__SH2D3C|p.E203K|1|0.42|ENSG00000095370|chr9:127751249-127751249|C/T|missense_variant	REV__SH2D3C|p.E203K|1|0.42|ENSG00000095370|chr9:127751249-127751249|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	380.9364318847656	3	380.220401	1137.63937	0.08899	3.3836E-05	-0.15606	-5.9338E-05	-0.067071	-2.5502E-05	380.2202514947608	27.292	0.30638	27.971	27.792	28.098	0.67857					9	5	2	0	0	0	0.47368	1	9316	9316		19.362	6.4893	1	3985100	+		29303	27957	20991	21157	28677	28677					0.07605970194572365
LEEENRVW	8	Unmodified	_LEEENRVW_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-SECPEP	A375_MHC_IP_R1	1	358.5892639160156	3	358.845334	1073.51417	-0.17656	-6.3358E-05	0.098303	3.5276E-05	-0.078258	-2.8082E-05	359.1797696435406	39.769	0.30431	39.769	39.643	39.948	0					8	5	2	0	0	0	0.972	1	13671	13671		0.45834	0	1	973140			29304	9060	20992	21158	28678	28678					-0.01964321941795788
LEEEQGPF	8	Unmodified	_LEEEQGPF_					0	0	0			REV__ZMYM3|p.S172F|1|0.11|ENSG00000147130|chrX:71252741-71252741|G/A|missense_variant	REV__ZMYM3|p.S172F|1|0.11|ENSG00000147130|chrX:71252741-71252741|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	475.1184387207031	2	474.71909	947.423627	-0.47698	-0.00022643	0.32931	0.00015633	-0.14767	-7.0102E-05	474.71923408961555	88.052	0.45708	88.784	88.468	88.925	0.7318					13	8	2	0	0	0	0.972	1	33544	33544		5.7604	3.4577	1	1315000	+		29305	29024	20993	21159	28679	28679					-0.05218790990079469
LEEERSWGPW	10	Unmodified	_LEEERSWGPW_					0	0	0		ENST00000393950.6_2_7:100210211-100210265:+|nuORF	ENST00000393950.6_2_7:100210211-100210265:+|nuORF	ENST00000393950.6_2_7:100210211-100210265:+|nuORF	MSMS	A375_MHC_IP_R2	2	644.9976196289062	2	644.801477	1287.5884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.466	1	68.202	67.702	68.702	0.73631								0	0	0	0.15265	1	25560	25560		12.241	0.74595	1				29306	11444	20994	21160	28680	28680					-0.0438897885028382
LEEESIWKER	10	Unmodified	_LEEESIWKER_					0	0	0		ENSG00000183559|ENST00000329446|C10orf120	ENSG00000183559|ENST00000329446|C10orf120	ENSG00000183559|ENST00000329446|C10orf120	MULTI-MSMS	A375_MHC_IP_R2	2	660.2348022460938	2	659.835517	1317.65648	-1.3433	-0.00088638	0.55526	0.00036638	-0.78807	-0.00051999	659.8355418194194	53.78	0.46217	54.531	54.301	54.764	0.75105					17	8	3	0	0	0	0.70012	1	20296	20296		12.241	0	1	3590000			29307	8504	20995	21161	28681	28681					0.010358460096995259
LEEESIWKER	10	Unmodified	_LEEESIWKER_					0	0	0		ENSG00000183559|ENST00000329446|C10orf120	ENSG00000183559|ENST00000329446|C10orf120	ENSG00000183559|ENST00000329446|C10orf120	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	659.835517	1317.65648	-0.37267	-0.0002459	-0.42766	-0.00028219	-0.80033	-0.00052809	659.8354833492442	54.389	0.45558	54.389	54.163	54.619	0	-0.070969	-0.00057859	NaN	12.241	20	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4750800			29308	8504	20995	21161							0.010358460096995259
LEEESIWKER	10	Unmodified	_LEEESIWKER_					0	0	0		ENSG00000183559|ENST00000329446|C10orf120	ENSG00000183559|ENST00000329446|C10orf120	ENSG00000183559|ENST00000329446|C10orf120	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	659.835517	1317.65648	-1.3433	-0.00088638	0.55526	0.00036638	-0.78807	-0.00051999	659.8355418194194	53.78	0.46217	54.531	54.301	54.764	0.75105	0.070969	0.00071854	NaN	12.241	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3590000			29309	8504	20995	21161							0.010358460096995259
LEEESTKEF	9	Unmodified	_LEEESTKEF_					0	0	0			REV__ENSG00000088035|ENST00000263440|ALG6	REV__ENSG00000088035|ENST00000263440|ALG6	MULTI-MSMS	A375_MHC_IP_R1	1	557.1615600585938	2	556.261319	1110.50808	-0.38147	-0.00021219	-0.63957	-0.00035577	-1.021	-0.00056796	556.2635272036854	106.31	1.1243	106.31	105.76	106.88	0					51	21	4	0	0	0	0.55818	1	39060	39060		16.942	6.1184	1	3174800	+		29310	16878	20996	21162	28682	28682					-0.042748849640020126
LEEEVKEFVK	10	Unmodified	_LEEEVKEFVK_					0	0	0		nc|ENSG00000163219|P42331-5|ARHGAP25;nc|ENSG00000163219|P42331-3|ARHGAP25;nc|ENSG00000163219|P42331-6|ARHGAP25;nc|ENSG00000163219|P42331|ARHGAP25;ENSG00000163219|ENST00000409202|ARHGAP25	nc|ENSG00000163219|P42331-5|ARHGAP25	nc|ENSG00000163219|P42331-5|ARHGAP25	MULTI-SECPEP	A375_MHC_IP_R2	2	417.97161865234375	3	417.227333	1248.66017	0.011827	4.9343E-06	-0.080856	-3.3735E-05	-0.06903	-2.8801E-05	417.2272773455708	67.733	0.45844	68.469	68.256	68.715	0.73631					15	8	2	0	0	0	0.93407	1	25749	25749		7.0371	2.6309	1	1990700			29311	6639	20997	21163	28683	28683					0.045785157835553036
LEEEVLQIRR	10	Unmodified	_LEEEVLQIRR_					0	0	0			REV__ENST00000558400.1_1_15:63349204-63351954:+|nuORF	REV__ENST00000558400.1_1_15:63349204-63351954:+|nuORF	MSMS	A375_MHC_IP_R2	2	642.8031616210938	2	642.867151	1283.71975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.44	1	108.19	107.69	108.69	0.75436								0	0	0	0.15435	1	40588	40588		6.7232	0	1		+	+	29312	15886	20998	21164	28684	28684					0.08923831517586223
LEEFEQRCYD	10	Unmodified	_LEEFEQRCYD_					0	0	0		nc|ENSG00000077684|Q6IE81-3|JADE1;JADE1|p.Q582Pfs*19|1|0.04|ENSG00000077684|chr4:128871477-128871478|-/CACAAATAAAGAA|frameshift_variant;nc|ENSG00000077684|Q6IE81-2|JADE1;ENSG00000077684|ENST00000226319|JADE1	nc|ENSG00000077684|Q6IE81-3|JADE1	nc|ENSG00000077684|Q6IE81-3|JADE1	MSMS	A375_MHC_IP_R1	1	666.2882080078125	2	666.28226	1330.54997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.766	1	99.766	99.266	100.27	0								0	0	0	0.15435	1	36655	36655		6.7232	0.51738	1				29313	1660	20999	21165	28685	28685					-0.10208652547089514
LEEFINGPN	9	Unmodified	_LEEFINGPN_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	A375_MHC_IP_R1	1	516.2112426757812	2	516.753464	1031.49238	-0.52775	-0.00027271	0.1974	0.00010201	-0.33034	-0.00017071	516.7533441302613	50.716	0.60918	50.716	50.459	51.068	0					25	11	3	0	0	0	0.74412	1	18001	18001		6.2058	0	1	4639100			29314	5230	21000	21166	28686	28686					-0.022111266903493743
LEEGFINVR	9	Unmodified	_LEEGFINVR_					0	0	0			REV__ENSG00000141232|ENST00000499247|TOB1	REV__ENSG00000141232|ENST00000499247|TOB1	MULTI-SECPEP	A375_MHC_IP_R1	1	538.2145385742188	2	538.790381	1075.56621	-0.48276	-0.00026011	0.27007	0.00014551	-0.21269	-0.00011459	538.7905135976478	53.887	0.7082	53.887	53.605	54.314	0					23	13	2	0	0	0	0.67483	1	19368	19368		14.838	8.6325	1	2197900	+		29315	19251	21001	21167	28687	28687					0.03144841471953441
LEEGKKAT	8	Unmodified	_LEEGKKAT_					0	0	0		nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	nc|ENSG00000198589|P50851-2|LRBA	nc|ENSG00000198589|P50851-2|LRBA	MULTI-MSMS	A375_MHC_IP_R1	1	438.2926940917969	2	438.245275	874.475997	0.071207	3.1206E-05	-0.22166	-9.714E-05	-0.15045	-6.5934E-05	438.2451223755045	54.098	0.80967	54.098	53.809	54.619	0					31	15	3	0	0	0	0.77624	1	19505	19505		8.5933	0	1	5779000			29316	9287	21002	21168	28688	28688					0.03373792143509036
LEEHENSI	8	Unmodified	_LEEHENSI_					0	0	0			REV__nc|ENSG00000002079|Q9H6N6|MYH16	REV__nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-MSMS	A375_MHC_IP_R2	2	486.1816711425781	2	485.727446	969.44034	-0.50707	-0.0002463	-1.8636	-0.0009052	-2.3707	-0.0011515	485.7263760565416	91.187	0.45514	91.921	91.767	92.222	0.7345					12	8	2	0	0	0	0.7338	1	34794	34794		24.674	0	1	872200	+		29317	27085	21003	21169	28689	28689					-0.04560290104143405
LEEHSQETY	9	Unmodified	_LEEHSQETY_					0	0	0			REV__ENST00000550865.1_1_12:76784181-76788455:-|nuORF	REV__ENST00000550865.1_1_12:76784181-76788455:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	569.2394409179688	2	568.248743	1134.48293	-0.35787	-0.00020336	-1.3625	-0.00077426	-1.7204	-0.00097762	568.2482361858331	76.961	0.70973	77.704	77.404	78.113	0.74293					28	13	3	0	0	0	0.63811	1	29327	29327		12.532	0	1	4561500	+		29318	16940	21004	21170	28690	28690					-0.0789293976654335
LEEIDGEIHY	10	Unmodified	_LEEIDGEIHY_					0	0	0			REV__tr|U7STX6|U7STX6_FUSNUCobyricacidsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobQPE=3SV=1	REV__tr|U7STX6|U7STX6_FUSNUCobyricacidsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobQPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	611.2520751953125	2	609.287868	1216.56118	-0.79495	-0.00048436	0.070659	4.3052E-05	-0.7243	-0.0004413	609.2878683083501	38.652	0.76486	39.427	39.149	39.914	0.77451					38	14	5	0	0	0	0.71245	1	14201	14201		6.7232	0.99131	1	35339000	+		29319	28516	21005	21171	28691	28691					-0.03843507181318273
LEEIFKNL	8	Unmodified	_LEEIFKNL_					0	0	0			REV__ENSG00000112245|ENST00000626021|PTP4A1	REV__ENSG00000112245|ENST00000626021|PTP4A1	MULTI-SECPEP	A375_MHC_IP_R1	1	503.68133544921875	2	503.2844	1004.55425	-0.81479	-0.00041007	-0.075571	-3.8034E-05	-0.89036	-0.00044811	503.78689337777996	29.472	0.30416	29.472	29.302	29.607	0					16	5	4	0	0	0	0.77651	1	9238	9238		20.454	0	1	53168000	+		29320	17719	21006	21172	28692	28692					0.0521522472874949
LEEILIEYF	9	Unmodified	_LEEILIEYF_					0	0	0			REV__tr|U7SRE1|U7SRE1_FUSNUYbgI/familydinuclearmetalcenterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01724PE=3SV=1	REV__tr|U7SRE1|U7SRE1_FUSNUYbgI/familydinuclearmetalcenterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01724PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	584.6799926757812	2	584.810448	1167.60634	-0.45405	-0.00026554	-2.2858	-0.0013368	-2.7399	-0.0016023	584.8090278349624	32.459	0.30288	32.459	32.282	32.585	0					10	5	2	0	0	0	0.75466	1	10517	10517		7.9102	7.9102	1	3059200	+		29321	28394	21007	21173	28693	28693					0.02924343351855896
LEEIMILKM	9	Unmodified	_LEEIMILKM_					0	0	0		ENST00000280377.9_1_12:62784999-62785134:+|nuORF	ENST00000280377.9_1_12:62784999-62785134:+|nuORF	ENST00000280377.9_1_12:62784999-62785134:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	560.4406127929688	2	560.311246	1118.60794	-0.64345	-0.00036053	0.38972	0.00021836	-0.25373	-0.00014217	560.3116407187075	46.904	0.56522	46.904	46.749	47.315	0					12	10	2	0	0	0	0.65246	1	16475	16475		6.7232	0	1	1612700			29322	10417	21008	21174	28694	28694					0.05337937844615226
LEEKAWSKY	9	Unmodified	_LEEKAWSKY_					0	0	0		nc|ENSG00000258597|P20848|SERPINA2	nc|ENSG00000258597|P20848|SERPINA2	nc|ENSG00000258597|P20848|SERPINA2	MULTI-MSMS	A375_MHC_IP_R2	2	577.6898803710938	2	577.298039	1152.58152	-0.18097	-0.00010447	-3.5072	-0.0020247	-3.6882	-0.0021292	577.7956933651085	77.484	0.30528	78.227	78.01	78.315	0.74293					7	5	2	0	0	0	0.60101	1	29370	29370		14.838	4.6877	1	1224200			29323	14927	21009	21175	28695	28695					0.011337082691625255
LEEKERALY	9	Unmodified	_LEEKERALY_					0	0	0		nc|ENSG00000185739|Q86TD4-1|SRL	nc|ENSG00000185739|Q86TD4-1|SRL	nc|ENSG00000185739|Q86TD4-1|SRL	MULTI-SECPEP	A375_MHC_IP_R2	2	384.9715576171875	3	384.208273	1149.60299	-0.37688	-0.0001448	-3.6863	-0.0014163	-4.0632	-0.0015611	384.20651850494977	18.874	0.37019	19.477	19.413	19.783	0.60308					12	9	2	0	0	0	0.74875	1	5730	5730		10.8	1.2555	1	15152000			29324	14813	21010	21176	28696	28696					0.034170932978668134
LEEKIKSLSI	10	Unmodified	_LEEKIKSLSI_					0	0	0			REV__tr|U7SRM7|U7SRM7_FUSNURqc2homologRqcHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rqcHPE=3SV=1	REV__tr|U7SRM7|U7SRM7_FUSNURqc2homologRqcHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rqcHPE=3SV=1	MSMS	A375_MHC_IP_R1	1	387.2803955078125	3	387.23594	1158.68599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.876	1	23.876	23.376	24.376	0								0	0	0	0.12504	1	6647	6647		37.075	2.1426	1		+		29325	28404	21011	21177	28697	28697					0.11299410025867473
LEEKLVDVL	9	Unmodified	_LEEKLVDVL_					0	0	0		nc|ENSG00000114654|Q9HA90-2|EFCC1;ENST00000481536.2_1_3:128749483-128758688:+|nuORF;nc|ENSG00000114654|Q9HA90|EFCC1;ENSG00000114654|ENST00000683648|EFCC1	nc|ENSG00000114654|Q9HA90-2|EFCC1	nc|ENSG00000114654|Q9HA90-2|EFCC1	MULTI-SECPEP	A375_MHC_IP_R1	1	529.6875610351562	2	529.310615	1056.60668	-0.45584	-0.00024128	0.94068	0.00049791	0.48484	0.00025663	529.3106548823678	97.131	0.80927	97.131	96.781	97.59	0					25	15	3	0	0	0	0.47368	1	35611	35611		20.454	0	1	3179600			29326	3235	21012	21178	28698	28698					0.08063763071731955
LEEKREELFRK	11	Unmodified	_LEEKREELFRK_					0	0	0			REV__nc|ENSG00000136811|Q5BJF6-9|ODF2	REV__nc|ENSG00000136811|Q5BJF6-9|ODF2	MULTI-MSMS	A375_MHC_IP_R1	1	493.3437194824219	3	492.943819	1475.80963	-0.2483	-0.0001224	-0.0989	-4.8752E-05	-0.3472	-0.00017115	492.9436743394568	70.979	0.46081	70.979	70.698	71.159	0					25	8	4	0	0	0	0.71778	1	25773	25773		14.171	7.9364	1	7788900	+		29327	18958	21013	21179	28699	28699					0.09075461126144546
LEEKREELFRK	11	Unmodified	_LEEKREELFRK_					0	0	0			REV__nc|ENSG00000136811|Q5BJF6-9|ODF2	REV__nc|ENSG00000136811|Q5BJF6-9|ODF2	MULTI-MSMS	A375_MHC_IP_R2	2	493.3435363769531	3	492.943819	1475.80963	-0.44542	-0.00021957	-0.31101	-0.00015331	-0.75644	-0.00037288	493.2779656769449	70.135	0.61053	70.869	70.488	71.099	0.73421					25	11	3	0	0	0	0.72883	1	26590	26590		10.016	1.7298	1	5283200	+		29328	18958	21013	21179	28700	28700					0.09075461126144546
LEEKREELFRK	11	Unmodified	_LEEKREELFRK_					0	0	0			REV__nc|ENSG00000136811|Q5BJF6-9|ODF2	REV__nc|ENSG00000136811|Q5BJF6-9|ODF2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	492.943819	1475.80963	-0.2483	-0.0001224	-0.0989	-4.8752E-05	-0.3472	-0.00017115	492.9436743394568	70.979	0.46081	70.979	70.698	71.159	0	0.055114	0.00015779	NaN	14.171	25	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7788900	+		29329	18958	21013	21179							0.09075461126144546
LEEKVQLGV	9	Unmodified	_LEEKVQLGV_					0	0	0		ENSG00000183671|ENST00000621141|CMKLR2	ENSG00000183671|ENST00000621141|CMKLR2	ENSG00000183671|ENST00000621141|CMKLR2	MULTI-SECPEP	A375_MHC_IP_R1	1	508.1947937011719	2	507.795132	1013.57571	-0.22852	-0.00011604	-0.14794	-7.5124E-05	-0.37646	-0.00019116	507.7950367768165	51.663	0.55875	51.663	51.475	52.034	0					14	10	2	0	0	0	0.56537	1	18386	18386		12.241	0	1	2214800			29330	8517	21014	21180	28701	28701					0.06946609757483202
LEELALLGAF	10	Unmodified	_LEELALLGAF_					0	0	0			REV__ENSG00000220008|ENST00000698372|LINGO3	REV__ENSG00000220008|ENST00000698372|LINGO3	MULTI-MSMS	A375_MHC_IP_R1	1	359.2501525878906	3	359.20598	1074.59611	0.022769	8.1786E-06	0.86963	0.00031237	0.89239	0.00032055	359.2061845685376	58.861	0.30437	58.861	58.582	58.887	0					9	5	2	0	0	0	0.53946	1	21141	21141		16.566	4.3911	1	1025000	+		29331	22686	21015	21181	28702	28702					0.06179780417301117
LEELALLGAF	10	Unmodified	_LEELALLGAF_					0	0	0			REV__ENSG00000220008|ENST00000698372|LINGO3	REV__ENSG00000220008|ENST00000698372|LINGO3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	359.20598	1074.59611	0.022769	8.1786E-06	0.86963	0.00031237	0.89239	0.00032055	359.2061845685376	58.861	0.30437	58.861	58.582	58.887	0	0	0	NaN	16.566	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1025000	+		29332	22686	21015	21181							0.06179780417301117
LEELAVLQL	9	Unmodified	_LEELAVLQL_					0	0	0			REV__ENSG00000147324|ENST00000276282|MFHAS1	REV__ENSG00000147324|ENST00000276282|MFHAS1	MULTI-SECPEP	A375_MHC_IP_R2	2	513.6507568359375	2	514.305332	1026.59611	-0.65495	-0.00033684	-2.0216	-0.0010397	-2.6765	-0.0013766	514.3040049346744	101.3	1.0213	102.06	101.55	102.57	0.76428					26	19	3	0	0	0	0.65246	1	38307	38307		15.847	0	1	1907300	+		29333	19585	21016	21182	28703	28703					0.08387780417297108
LEELFTLW	8	Unmodified	_LEELFTLW_					0	0	0		ENST00000256722.9_2_2:7001351-7001417:-|nuORF	ENST00000256722.9_2_2:7001351-7001417:-|nuORF	ENST00000256722.9_2_2:7001351-7001417:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	526.1822509765625	2	525.778951	1049.54335	-0.35818	-0.00018832	2.6258	0.0013806	2.2676	0.0011923	525.7802600752036	56.252	0.50647	56.252	55.941	56.447	0					14	9	2	0	0	0	0.69122	1	20200	20200		32.305	10.559	1	2130800			29334	10243	21017	21183	28704	28704					0.02055822354486736
LEELIEKSL	9	Unmodified	_LEELIEKSL_					0	0	0			REV__ENSG00000109047|ENST00000226193|RCVRN	REV__ENSG00000109047|ENST00000226193|RCVRN	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1321411132812	2	537.308072	1072.60159	-1.2588	-0.00067638	1.1171	0.00060023	-0.14171	-7.6144E-05	537.8100346302599	59.61	0.91174	60.357	59.641	60.553	0.74714					20	17	2	0	0	0	0.47368	1	22578	22578		20.454	2.3073	1	2061200	+		29335	17567	21018	21184	28705	28705					0.06819459209100387
LEELIVKYLP	10	Unmodified	_LEELIVKYLP_					0	0	0		ENSG00000154359|ENST00000398246|LONRF1;nc|ENSG00000154359|Q17RB8-2|LONRF1	ENSG00000154359|ENST00000398246|LONRF1	ENSG00000154359|ENST00000398246|LONRF1	MULTI-SECPEP	A375_MHC_IP_R1	1	405.6146545410156	3	406.244435	1215.71148	-0.17567	-7.1364E-05	2.6918	0.0010935	2.5161	0.0010221	406.24532014551596	43.332	0.40736	43.332	43.095	43.502	0					9	7	2	0	0	0	0.91909	1	15037	15037		5.4027	2.0831	1	647980			29336	6083	21019	21185	28706	28706					0.11224884548278169
LEELKRCN	8	Unmodified	_LEELKRCN_					0	0	0		ENSG00000172421|ENST00000305286|EFCAB3;nc|ENSG00000172421|Q8N7B9-2|EFCAB3	ENSG00000172421|ENST00000305286|EFCAB3	ENSG00000172421|ENST00000305286|EFCAB3	MULTI-MSMS	A375_MHC_IP_R2	2	502.6961364746094	2	502.763309	1003.51206	-1.1878	-0.00059718	-1.4183	-0.00071305	-2.606	-0.0013102	502.7616145082088	53.524	0.35858	54.275	53.995	54.353	0.75105					8	6	2	0	0	0	0.75805	1	20195	20195		18.135	0	1	823360			29337	7709	21020	21186	28707	28707					0.010449260487234824
LEELMVNKALM	11	Unmodified	_LEELMVNKALM_					0	0	0			REV__ENSG00000167207|ENST00000647318|NOD2	REV__ENSG00000167207|ENST00000647318|NOD2	MULTI-MSMS	A375_MHC_IP_R2	2	430.9507141113281	3	430.898053	1289.67233	-0.68664	-0.00029587	0.82756	0.00035659	0.14092	6.0722E-05	430.8982718759685	28.481	0.60812	29.159	28.655	29.263	0.67857					32	11	5	0	0	0	0.73078	1	9639	9639		4.1166	0.52395	1	22649000	+		29338	20740	21021	21187	28708	28708					0.039080929307601764
LEELTILGKA	10	Unmodified	_LEELTILGKA_					0	0	0			REV__ENST00000506104.1_1_17:47013530-47014253:-|nuORF	REV__ENST00000506104.1_1_17:47013530-47014253:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	362.4677734375	3	362.885018	1085.63323	-0.055734	-2.0225E-05	0.30784	0.00011171	0.25211	9.1486E-05	362.8850652367376	48.404	0.50321	49.162	48.829	49.332	0.75737					12	9	2	0	0	0	0.92957	1	18182	18182		3.3196	0	1	863870	+		29339	25548	21022	21188	28709	28709					0.09383451963049083
LEELYRCCM	9	Unmodified	_LEELYRCCM_					0	0	0		nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	MSMS	A375_MHC_IP_R1	1	580.2291870117188	2	580.250862	1158.48717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.596	1	98.596	98.096	99.096	0								0	0	0	0.15283	1	36224	36224		16.942	1.0951	1				29340	6340	21023	21189	28710	28710					-0.08573213140493863
LEELYRCCM	9	Unmodified	_LEELYRCCM_					0	0	0		nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	MSMS	A375_MHC_IP_R2	2	580.22900390625	2	580.250862	1158.48717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.783	1	98.539	98.039	99.039	0.75586								0	0	0	0.15283	1	37109	37109		16.942	4.4107	1				29341	6340	21023	21189	28711	28711					-0.08573213140493863
LEELYRCCM	9	Unmodified	_LEELYRCCM_					0	0	0		nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	MSMS	A375_MHC_IP_R2	2	580.2289428710938	2	580.250862	1158.48717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.03	1	103.8	103.3	104.3	0.76428								0	0	0	0.15486	1	39026	39026		11.64	3.7301	1				29342	6340	21023	21189	28712	28712					-0.08573213140493863
LEELYTKKLW	10	Unmodified	_LEELYTKKLW_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-MSMS	A375_MHC_IP_R2	2	442.3174133300781	3	441.583339	1321.72819	-0.2464	-0.00010881	-0.096441	-4.2587E-05	-0.34284	-0.00015139	441.5832080446168	69.299	0.71114	70.033	69.829	70.54	0.73421					24	13	3	0	0	0	0.040521	1	26262	26262		78.61	56.502	1	4290800			29343	8680	21024	21190	28713	28713					0.08019385434226933
LEELYTKKLWH	11	Unmodified	_LEELYTKKLWH_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-SECPEP	A375_MHC_IP_R2	2	729.796630859375	2	730.400827	1458.7871	-0.80194	-0.00058574	-2.4756	-0.0018082	-3.2775	-0.0023939	730.9025851693182	123.23	0.2019	123.61	123.48	123.68	0.3766					5	3	2	0	0	0	0.99227	1	47307	47307		2.9952	0	1	9318800			29344	8680	21025	21191	28714	28714					0.07605861728575292
LEEMLAIW	8	Unmodified	_LEEMLAIW_					0	0	0		chr19:46861209-46918488|448|15.42|0.0|20.56|+|0|ARHGAP35,ARHGAP35|1	chr19:46861209-46918488|448|15.42|0.0|20.56|+|0|ARHGAP35,ARHGAP35|1	chr19:46861209-46918488|448|15.42|0.0|20.56|+|0|ARHGAP35,ARHGAP35|1	MSMS	A375_MHC_IP_R2	2	502.6817626953125	2	502.759704	1003.50485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.781	1	56.531	56.031	57.031	0.75015								0	0	0	0.16876	1	21076	21076		14.582	1.0738	1				29345	456	21026	21192	28715	28715					0.003241934483071418
LEEMWDERLSR	11	Unmodified	_LEEMWDERLSR_					0	0	0		MYH6|p.R779W|1|0.34|ENSG00000197616|chr14:23396378-23396378|G/A|missense_variant	MYH6|p.R779W|1|0.34|ENSG00000197616|chr14:23396378-23396378|G/A|missense_variant	MYH6|p.R779W|1|0.34|ENSG00000197616|chr14:23396378-23396378|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	488.4691467285156	3	488.569764	1462.68746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.035	1	60.783	60.283	61.283	0.74714								0	0	0	0.1635	1	22721	22721		0.50596	0.051438	1				29346	14435	21027	21193	28716	28716					-0.025373239476948584
LEENHMGWF	9	Unmodified	_LEENHMGWF_					0	0	0		ENST00000523711.5_1_8:1824717-1874701:+|nuORF	ENST00000523711.5_1_8:1824717-1874701:+|nuORF	ENST00000523711.5_1_8:1824717-1874701:+|nuORF	MSMS	A375_MHC_IP_R2	2	581.619873046875	2	581.752941	1161.49133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.14	1	109.89	109.39	110.39	0.74684								0	0	0	0.15142	1	41196	41196		19.257	1.1106	1				29347	13047	21028	21194	28717	28717					-0.08295664330944419
LEENNCYTA	9	Unmodified	_LEENNCYTA_					0	0	0		ANO4|p.D232N|1|0.57|ENSG00000151572|chr12:100987630-100987630|G/A|missense_variant	ANO4|p.D232N|1|0.57|ENSG00000151572|chr12:100987630-100987630|G/A|missense_variant	ANO4|p.D232N|1|0.57|ENSG00000151572|chr12:100987630-100987630|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	529.1178588867188	2	528.718764	1055.42298	-0.74867	-0.00039583	-0.83827	-0.00044321	-1.5869	-0.00083904	528.7183510517472	91.071	0.96484	91.071	90.539	91.503	0					47	18	3	0	0	0	0.64808	1	33379	33379		11.64	1.5664	1	3258100			29348	150	21029	21195	28718	28718					-0.10251953701435923
LEENVHEVL	9	Unmodified	_LEENVHEVL_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF;ENST00000563484.1_1_16:89971421-89975542:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-SECPEP	A375_MHC_IP_R1	1	541.6690063476562	2	541.279846	1080.54514	-0.79277	-0.00042911	0.44237	0.00023945	-0.35039	-0.00018966	541.2803531021025	53.053	0.55602	53.053	52.847	53.403	0					13	10	2	0	0	0	0.4465	1	18995	18995		24.991	2.2547	1	1582200			29349	5206	21030	21196	28719	28719					0.008088313724329055
LEENVPPED	9	Unmodified	_LEENVPPED_					0	0	0		nc|ENSG00000091128|A4D0S4-3|LAMB4;ENSG00000091128|ENST00000388781|LAMB4	nc|ENSG00000091128|A4D0S4-3|LAMB4	nc|ENSG00000091128|A4D0S4-3|LAMB4	MULTI-SECPEP	A375_MHC_IP_R1	1	520.6690673828125	2	521.240386	1040.46622	-0.59807	-0.00031174	0.37526	0.0001956	-0.22281	-0.00011614	521.7421641615831	65.108	0.35518	65.108	65.005	65.36	0					10	6	2	0	0	0	0.71341	1	23583	23583		18.146	8.7989	1	675540			29350	1970	21031	21197	28720	28720					-0.05239440652508165
LEENVPPED	9	Unmodified	_LEENVPPED_					0	0	0		nc|ENSG00000091128|A4D0S4-3|LAMB4;ENSG00000091128|ENST00000388781|LAMB4	nc|ENSG00000091128|A4D0S4-3|LAMB4	nc|ENSG00000091128|A4D0S4-3|LAMB4	MULTI-MATCH	A375_MHC_IP_R2	2		2	521.240386	1040.46622	-0.55997	-0.00029188	0.90337	0.00047087	0.3434	0.00017899	521.2404235454102	64.442	0.45877	65.182	65.004	65.463	0.74022	0.037363	0.00042414	NaN	18.146	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	862970			29351	1970	21031	21197							-0.05239440652508165
LEEPHRISL	9	Unmodified	_LEEPHRISL_					0	0	0			REV__ENSG00000149781|ENST00000345728|FERMT3	REV__ENSG00000149781|ENST00000345728|FERMT3	MULTI-SECPEP	A375_MHC_IP_R1	1	547.1774291992188	2	547.303655	1092.59276	-0.54563	-0.00029863	-0.42778	-0.00023413	-0.97341	-0.00053275	547.3034080565898	59.372	0.45699	59.372	59.041	59.498	0					10	8	2	0	0	0	0.3213	1	21338	21338		30.637	7.9785	1	1210000	+		29352	19696	21032	21198	28721	28721					0.0501653036328662
LEEPLFYDY	9	Unmodified	_LEEPLFYDY_					0	0	0			REV__tr|U7SNJ7|U7SNJ7_FUSNUS-adenosylmethionine:tRNAribosyltransferase-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=queAPE=3SV=1	REV__tr|U7SNJ7|U7SNJ7_FUSNUS-adenosylmethionine:tRNAribosyltransferase-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=queAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	594.716796875	2	594.776605	1187.53866	-0.5229	-0.00031101	0.28799	0.00017129	-0.23491	-0.00013972	594.7766639561183	44.256	0.91236	45.025	44.682	45.594	0.76909					25	17	2	0	0	0	0.76187	1	16626	16626		11.64	0.14559	1	1459500	+		29353	28333	21033	21199	28722	28722					-0.04761106578939689
LEEPTSGKIFI	11	Unmodified	_LEEPTSGKIFI_					0	0	0		tr|U7SWZ0|U7SWZ0_FUSNUMethionineimportATP-bindingproteinMetNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01221PE=4SV=1	tr|U7SWZ0|U7SWZ0_FUSNUMethionineimportATP-bindingproteinMetNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01221PE=4SV=1	tr|U7SWZ0|U7SWZ0_FUSNUMethionineimportATP-bindingproteinMetNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01221PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	412.2955627441406	3	411.895695	1232.66525	0.099224	4.087E-05	0.11845	4.8788E-05	0.21767	8.9657E-05	411.8956471904952	39.416	0.60701	39.416	39.187	39.794	0					21	11	3	0	0	0	0.64288	1	13501	13501		19.987	5.7687	1	6057600			29354	29821	21034	21200	28723	28723					0.05822819646209609
LEEPTVIKKY	10	Unmodified	_LEEPTVIKKY_					0	0	0		ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENSG00000089006|ENST00000377759|SNX5;ENST00000547000.1_1_12:101462478-101462640:+|nuORF	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	610.7498779296875	2	610.350271	1218.68599	-0.35128	-0.0002144	0.17848	0.00010894	-0.1728	-0.00010547	610.3502882855362	39.416	0.60792	39.416	39.136	39.744	0					29	11	4	0	0	0	0.072569	1	13437	13437		94.909	47.314	1	19514000			29355	12644	21035	21201	28724	28724					0.08539410025855432
LEEPTVIKKY	10	Unmodified	_LEEPTVIKKY_					0	0	0		ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENSG00000089006|ENST00000377759|SNX5;ENST00000547000.1_1_12:101462478-101462640:+|nuORF	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	407.6106262207031	3	407.23594	1218.68599	-0.32038	-0.00013047	0.12905	5.2553E-05	-0.19133	-7.7917E-05	407.23599299907687	38.652	1.1211	39.426	38.997	40.118	0.77451					72	21	5	0	0	0	0.0040472	2	14256	14160;14256		78.61	41.214	1	129860000			29356	12644	21035	21201	28725;28726	28726					0.08539410025855432
LEEPTVIKKY	10	Unmodified	_LEEPTVIKKY_					0	0	0		ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENSG00000089006|ENST00000377759|SNX5;ENST00000547000.1_1_12:101462478-101462640:+|nuORF	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	609.687255859375	2	610.350271	1218.68599	-0.82265	-0.0005021	0.24841	0.00015162	-0.57423	-0.00035048	610.3502234691309	38.635	0.66094	39.41	39.047	39.708	0.77451					33	12	4	0	0	0	0.57412	1	14204	14204		43.982	23.567	1	12891000			29357	12644	21035	21201	28727	28727					0.08539410025855432
LEEQAENYL	9	Unmodified	_LEEQAENYL_					0	0	0			REV__ENSG00000174799|ENST00000257287|CEP135	REV__ENSG00000174799|ENST00000257287|CEP135	MULTI-SECPEP	A375_MHC_IP_R2	2	555.2182006835938	2	554.761486	1107.50842	-0.64176	-0.00035602	0.43767	0.0002428	-0.20409	-0.00011322	555.2634215653735	86.744	0.40759	87.477	87.255	87.662	0.733					11	7	2	0	0	0	0.47368	1	32912	32912		20.454	0	1	1343000	+		29358	21301	21036	21202	28728	28728					-0.04103465244156723
LEEQHKKF	8	Unmodified	_LEEQHKKF_					0	0	0			REV__ENSG00000007314|ENST00000435607|SCN4A	REV__ENSG00000007314|ENST00000435607|SCN4A	MULTI-SECPEP	A375_MHC_IP_R2	2	352.9774475097656	3	353.525825	1057.55564	-0.45905	-0.00016229	0.61332	0.00021683	0.15427	5.4539E-05	353.86062946335744	26.854	0.30842	27.514	27.363	27.671	0.65992					10	5	3	0	0	0	0.97021	1	9133	9133		6.7232	0	1	1593900	+		29359	16156	21037	21203	28729	28729					0.029168588175252808
LEEQHRMLDQR	11	Unmodified	_LEEQHRMLDQR_					0	0	0			REV__ENST00000442352.1_1_13:19782657-19801502:-|nuORF	REV__ENST00000442352.1_1_13:19782657-19801502:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	728.260498046875	2	727.862074	1453.7096	-0.8178	-0.00059524	0.079705	5.8014E-05	-0.73809	-0.00053723	727.862086298786	133.53	0.25478	133.53	133.41	133.66	0					11	4	3	0	0	0	0.73135	1	51508	51508		7.609	0	1	13641000	+		29360	24816	21038	21204	28730	28730					0.0008890052072274557
LEEQHRMLDQR	11	Unmodified	_LEEQHRMLDQR_					0	0	0			REV__ENST00000442352.1_1_13:19782657-19801502:-|nuORF	REV__ENST00000442352.1_1_13:19782657-19801502:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	727.862074	1453.7096	-0.8178	-0.00059524	0.079705	5.8014E-05	-0.73809	-0.00053723	727.862086298786	133.53	0.25478	133.53	133.41	133.66	0	-0.022568	-0.00024031	NaN	7.609	11	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13641000	+		29361	24816	21038	21204							0.0008890052072274557
LEEQHRMLDQR	11	Unmodified	_LEEQHRMLDQR_					0	0	0			REV__ENST00000442352.1_1_13:19782657-19801502:-|nuORF	REV__ENST00000442352.1_1_13:19782657-19801502:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	727.862074	1453.7096	-0.72351	-0.00052662	0.54131	0.000394	-0.1822	-0.00013262	727.8621952009474	133.41	0.45502	133.58	133.4	133.85	0.16487	0.022568	0.00043166	NaN	7.609	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8626900	+		29362	24816	21038	21204							0.0008890052072274557
LEERDDSL	8	Unmodified	_LEERDDSL_					0	0	0			REV__ENST00000392900.3_1_7:143551228-143582358:-|nuORF	REV__ENST00000392900.3_1_7:143551228-143582358:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	489.1322937011719	2	488.732729	975.450904	-0.35285	-0.00017245	-0.33618	-0.0001643	-0.68903	-0.00033675	488.73250496398776	100.16	0.50901	100.93	100.68	101.19	0.76278					16	9	2	0	0	0	0.97144	1	37998	37998		9.3474	9.3474	1	1411000	+		29363	22370	21039	21205	28731	28731					-0.03780307449699194
LEERDLPRA	9	Unmodified	_LEERDLPRA_					0	0	0			REV__nc|ENSG00000107736|Q9H251-4|CDH23	REV__nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	A375_MHC_IP_R1	1	549.6965942382812	2	549.798737	1097.58292	-0.74976	-0.00041222	-0.69797	-0.00038374	-1.4477	-0.00079596	549.7981752641201	86.096	1.0146	86.096	85.462	86.477	0					26	19	2	0	0	0	0.61998	1	31545	31545		13.906	0.86358	1	9411400	+		29364	17494	21040	21206	28732	28732					0.03803342357900874
LEERERYRNYR	11	Unmodified	_LEERERYRNYR_					0	0	0			REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF	REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF	MSMS	A375_MHC_IP_R1	1	528.6387939453125	3	528.606089	1582.79644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.548	1	83.548	83.048	84.048	0								0	0	0	0.16338	1	30573	30573		1.1098	0.6038	1		+		29365	18488	21041	21207	28733	28733					0.028350230668138465
LEERINKKI	9	Unmodified	_LEERINKKI_					0	0	0			REV__tr|U7T770|U7T770_FUSNUUPF0122proteinHMPREF1766_00136OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00136PE=3SV=1	REV__tr|U7T770|U7T770_FUSNUUPF0122proteinHMPREF1766_00136OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00136PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	572.2478637695312	2	571.84823	1141.68191	-0.61522	-0.00035181	0.31244	0.00017867	-0.30278	-0.00017315	571.8482902636389	67.563	0.45774	67.563	67.297	67.754	0					13	8	3	0	0	0	0.56537	1	24499	24499		29.082	5.061	1	1466400	+		29366	28880	21042	21208	28734	28734					0.11673365322803875
LEESRGQLK	9	Unmodified	_LEESRGQLK_					0	0	0			REV__nc|ENSG00000128849|Q0VF96-2|CGNL1	REV__nc|ENSG00000128849|Q0VF96-2|CGNL1	MULTI-MSMS	A375_MHC_IP_R1	1	530.69287109375	2	530.293288	1058.57202	-0.25356	-0.00013446	-0.4997	-0.00026499	-0.75326	-0.00039945	530.7949350313178	126.22	1.5133	126.22	125.65	127.16	0					47	29	3	0	0	0	0.6656	1	48472	48472		10.074	0	1	11307000	+		29367	18472	21043	21209	28735	28735					0.04507939983614051
LEESRRLW	8	Unmodified	_LEESRRLW_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000173898|O15020-2|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	A375_MHC_IP_R2	2	363.9327087402344	3	363.533091	1087.57744	-0.24804	-9.0172E-05	-0.056842	-2.0664E-05	-0.30489	-0.00011084	363.53302744950173	35.76	0.55824	36.523	36.183	36.741	0.76338					26	10	4	0	0	0	0.72284	1	12963	12963		27.629	9.4825	1	6849800			29368	3298;7838	21044	21210	28736	28736					0.03715663566094918
LEESRRLWRFL	11	Unmodified	_LEESRRLWRFL_					0	0	0		nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-SECPEP	A375_MHC_IP_R1	1	753.3223266601562	2	752.922792	1503.83103	-0.28389	-0.00021375	-0.19928	-0.00015005	-0.48317	-0.00036379	752.9224319333103	107.11	0.61304	107.11	106.83	107.44	0					26	11	3	0	0	0	1.0007	1	39314	39314		0.35063	0	1	2118000			29369	7838	21045	21211	28737	28737					0.09926890945530431
LEESTIRHF	9	Unmodified	_LEESTIRHF_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	MULTI-SECPEP	A375_MHC_IP_R1	1	566.6935424804688	2	566.293288	1130.57202	-0.56826	-0.0003218	0.30922	0.00017511	-0.25904	-0.00014669	566.2934593999634	32.464	0.56052	32.464	32.024	32.585	0					19	10	3	0	0	0	0.0575	1	10509	10509		86.332	86.332	1	4329900			29370	7019	21046	21212	28738	28738					0.011959399836314333
LEESTIRHF	9	Unmodified	_LEESTIRHF_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	MULTI-MSMS	A375_MHC_IP_R2	2	378.2646789550781	3	377.864617	1130.57202	0.13506	5.1035E-05	0.41562	0.00015705	0.55068	0.00020808	377.8646223939439	31.72	1.0163	32.457	32.146	33.162	0.73691					35	19	3	0	0	0	0.026372	1	11243	11243		78.06	46.023	1	16635000			29371	7019	21046	21212	28739	28739					0.011959399836314333
LEESTIRHF	9	Unmodified	_LEESTIRHF_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	MULTI-SECPEP	A375_MHC_IP_R2	2	566.6930541992188	2	566.293288	1130.57202	-0.42978	-0.00024338	-0.047119	-2.6683E-05	-0.4769	-0.00027006	566.2932328078359	31.727	0.30453	32.464	32.3	32.605	0.73691					12	5	3	0	0	0	0.20059	1	11255	11255		51.415	9.4597	1	3828900			29372	7019	21046	21212	28740	28740					0.011959399836314333
LEETLKIFD	9	Unmodified	_LEETLKIFD_					0	0	0			REV__tr|U7T6I9|U7T6I9_FUSNUDUF5105domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00254PE=4SV=1	REV__tr|U7T6I9|U7T6I9_FUSNUDUF5105domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00254PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	554.71875	2	554.300247	1106.58594	-0.36881	-0.00020443	0.24307	0.00013474	-0.12574	-6.9695E-05	554.3002186351409	78.813	0.76053	78.813	78.556	79.316	0					29	14	3	0	0	0	0.4261	1	28833	28833		30.637	15.798	1	5170800	+		29373	28863	21047	21213	28741	28741					0.03691172692060718
LEETLKIFD	9	Unmodified	_LEETLKIFD_					0	0	0			REV__tr|U7T6I9|U7T6I9_FUSNUDUF5105domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00254PE=4SV=1	REV__tr|U7T6I9|U7T6I9_FUSNUDUF5105domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00254PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	554.084716796875	2	554.300247	1106.58594	-0.76283	-0.00042284	-0.17119	-9.4889E-05	-0.93402	-0.00051772	554.3000220076848	78.077	0.56328	78.82	78.468	79.031	0.74293					19	10	2	0	0	0	0.51106	1	29708	29708		19.257	7.6167	1	5952000	+		29374	28863	21047	21213	28742	28742					0.03691172692060718
LEETSGLKIF	10	Unmodified	_LEETSGLKIF_					0	0	0		PTPRN2|p.L590F|1|0.39|ENSG00000155093|chr7:157898693-157898693|G/A|missense_variant	PTPRN2|p.L590F|1|0.39|ENSG00000155093|chr7:157898693-157898693|G/A|missense_variant	PTPRN2|p.L590F|1|0.39|ENSG00000155093|chr7:157898693-157898693|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	568.6848754882812	2	568.813522	1135.61249	-0.63688	-0.00036227	-0.25779	-0.00014663	-0.89467	-0.0005089	568.8133350412437	60.687	0.55807	61.432	61.16	61.718	0.74503					27	10	4	0	0	0	0.24752	1	22982	22982		53.833	26.204	1	8232900			29375	15251	21048	21214	28743	28743					0.05010861583377846
LEETSMVTSSF	11	Unmodified	_LEETSMVTSSF_					0	0	0		ENST00000399247.6_1_6:29706077-29706359:-|nuORF	ENST00000399247.6_1_6:29706077-29706359:-|nuORF	ENST00000399247.6_1_6:29706077-29706359:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	616.1812744140625	2	615.781561	1229.54857	-0.54373	-0.00033482	-0.56886	-0.00035029	-1.1126	-0.00068511	615.7813272919715	84.849	0.81753	84.849	84.494	85.311	0					29	15	3	0	0	0	0.98748	1	31061	31061		8.7454	0	1	9646300			29376	11538	21049	21215	28744	28744					-0.057022866358693136
LEETTSVGGL	10	Unmodified	_LEETTSVGGL_					0	0	0			REV__RNF20|p.S42T|1|0.83|ENSG00000155827|chr9:101535547-101535547|T/A|missense_variant	REV__RNF20|p.S42T|1|0.83|ENSG00000155827|chr9:101535547-101535547|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	503.6182861328125	2	503.258579	1004.50261	-0.42896	-0.00021588	0.54473	0.00027414	0.11577	5.826E-05	503.25869842113093	83.586	0.25273	83.586	83.483	83.736	0					6	4	2	0	0	0	0.91556	1	30622	30622		6.2058	0	1	438190	+		29377	27891	21050	21216	28745	28745					0.0005343624420675042
LEEVPEDEW	9	Unmodified	_LEEVPEDEW_					0	0	0		nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	MULTI-MSMS	A375_MHC_IP_R1	1	573.7134399414062	2	573.253494	1144.49243	-0.22094	-0.00012665	2.2568	0.0012937	2.0359	0.0011671	573.2543200715411	46.254	0.45292	46.254	45.992	46.444	0					13	8	2	0	0	0	0.64808	1	16170	16170		11.64	4.0313	1	2413700			29378	7623	21051	21217	28746	28746					-0.07403171481041682
LEEVRMYY	8	Unmodified	_LEEVRMYY_					0	0	0		ENST00000483634.1_1_6:24408642-24418827:+|nuORF	ENST00000483634.1_1_6:24408642-24418827:+|nuORF	ENST00000483634.1_1_6:24408642-24418827:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	551.2072143554688	2	551.765517	1101.51648	-0.85959	-0.00047429	-0.44304	-0.00024445	-1.3026	-0.00071875	551.7652767079496	70.886	0.45413	71.62	71.352	71.806	0.73421					10	8	2	0	0	0	0.94479	1	26881	26881		13.508	2.684	1	3660300			29379	12545	21052	21218	28747	28747					-0.030216095283549294
LEEWRIRW	8	Unmodified	_LEEWRIRW_					0	0	0			REV__nc|ENSG00000159899|P20594-2|NPR2	REV__nc|ENSG00000159899|P20594-2|NPR2	MULTI-SECPEP	A375_MHC_IP_R2	2	396.6272277832031	3	396.548852	1186.62473	-0.32967	-0.00013073	-4.2646	-0.0016911	-4.5943	-0.0018219	396.5474561657586	38.005	0.41228	38.78	38.534	38.946	0.77451					10	7	2	0	0	0	0.972	1	13891	13891		6.7232	0	1	1309700	+		29380	20139	21053	21219	28748	28748					0.03887942837081937
LEFAVVHNY	9	Unmodified	_LEFAVVHNY_					0	0	0		ENSG00000185818|ENST00000423729|NAT8L	ENSG00000185818|ENST00000423729|NAT8L	ENSG00000185818|ENST00000423729|NAT8L	MULTI-SECPEP	A375_MHC_IP_R1	1	546.68017578125	2	546.279649	1090.54475	-0.36053	-0.00019695	0.57049	0.00031165	0.20996	0.00011469	546.2800636763656	72.296	0.35449	72.296	72.119	72.474	0					9	6	2	0	0	0	0.20645	1	26297	26297		56.177	16.22	1	2432200			29381	8695	21054	21220	28749	28749					0.003094564432331026
LEFEGVKEKF	10	Unmodified	_LEFEGVKEKF_					0	0	0		ENSG00000114573|ENST00000273398|ATP6V1A;nc|ENSG00000114573|P38606-2|ATP6V1A	ENSG00000114573|ENST00000273398|ATP6V1A	ENSG00000114573|ENST00000273398|ATP6V1A	MULTI-MSMS	A375_MHC_IP_R1	1	409.62030029296875	3	409.22029	1224.63904	-0.03917	-1.6029E-05	0.011506	4.7084E-06	-0.027664	-1.1321E-05	409.2201908320193	57.345	0.76336	57.345	57.007	57.771	0					32	14	3	0	0	0	0.017675	1	20555	20555		87.123	44.288	1	7675500			29382	3230	21055	21221	28750	28750					0.03570550474705669
LEFEGVKEKF	10	Unmodified	_LEFEGVKEKF_					0	0	0		ENSG00000114573|ENST00000273398|ATP6V1A;nc|ENSG00000114573|P38606-2|ATP6V1A	ENSG00000114573|ENST00000273398|ATP6V1A	ENSG00000114573|ENST00000273398|ATP6V1A	MULTI-SECPEP	A375_MHC_IP_R1	1	613.7266845703125	2	613.326796	1224.63904	-0.30024	-0.00018414	0.76307	0.00046801	0.46283	0.00028386	613.3272462010792	57.338	0.50949	57.338	57.059	57.568	0					14	9	2	0	0	0	0.74768	1	20599	20599		21.799	0	1	2629400			29383	3230	21055	21221	28751	28751					0.03570550474705669
LEFEGVKEKF	10	Unmodified	_LEFEGVKEKF_					0	0	0		ENSG00000114573|ENST00000273398|ATP6V1A;nc|ENSG00000114573|P38606-2|ATP6V1A	ENSG00000114573|ENST00000273398|ATP6V1A	ENSG00000114573|ENST00000273398|ATP6V1A	MULTI-MSMS	A375_MHC_IP_R2	2	409.62030029296875	3	409.22029	1224.63904	-0.36016	-0.00014739	-0.14167	-5.7975E-05	-0.50184	-0.00020536	409.2202391904752	56.555	0.71213	57.305	57	57.712	0.75015					29	13	3	0	0	0	0.069075	1	21342	21342		70.496	42.262	1	7928800			29384	3230	21055	21221	28752	28752					0.03570550474705669
LEFEGVKEKF	10	Unmodified	_LEFEGVKEKF_					0	0	0		ENSG00000114573|ENST00000273398|ATP6V1A;nc|ENSG00000114573|P38606-2|ATP6V1A	ENSG00000114573|ENST00000273398|ATP6V1A	ENSG00000114573|ENST00000273398|ATP6V1A	MULTI-MSMS	A375_MHC_IP_R2	2	613.7261352539062	2	613.326796	1224.63904	-0.92612	-0.00056801	0.32693	0.00020052	-0.59919	-0.0003675	613.32722085657	56.548	0.40796	57.298	57	57.408	0.75014					12	7	2	0	0	0	0.37263	1	21396	21396		46.475	11.543	1	1960800			29385	3230	21055	21221	28753	28753					0.03570550474705669
LEFELRREIKR	11	Unmodified	_LEFELRREIKR_					0	0	0		nc|ENSG00000276234|O75478|TADA2A;ENSG00000276234|ENST00000615182|TADA2A	nc|ENSG00000276234|O75478|TADA2A	nc|ENSG00000276234|O75478|TADA2A	MULTI-MSMS	A375_MHC_IP_R1	1	497.3592834472656	3	496.959692	1487.85725	-0.70895	-0.00035232	0.024809	1.2329E-05	-0.68414	-0.00033999	496.95973852254355	26.399	0.55827	26.399	26.118	26.677	0					38	10	5	0	0	0	0.73318	1	7806	7806		5.8681	5.8681	1	48683000			29386	10020	21056	21222	28754	28754					0.13283160117020998
LEFELRREIKR	11	Unmodified	_LEFELRREIKR_					0	0	0		nc|ENSG00000276234|O75478|TADA2A;ENSG00000276234|ENST00000615182|TADA2A	nc|ENSG00000276234|O75478|TADA2A	nc|ENSG00000276234|O75478|TADA2A	MULTI-MSMS	A375_MHC_IP_R2	2	373.3714904785156	4	372.971588	1487.85725	-0.032109	-1.1976E-05	-0.12851	-4.7929E-05	-0.16061	-5.9905E-05	372.9715521396793	25.719	0.86432	26.379	25.941	26.805	0.65992					62	16	6	0	0	0	0.73715	1	8537	8537		2.084	2.084	1	116750000			29387	10020	21056	21222	28755	28755					0.13283160117020998
LEFELRREIKR	11	Unmodified	_LEFELRREIKR_					0	0	0		nc|ENSG00000276234|O75478|TADA2A;ENSG00000276234|ENST00000615182|TADA2A	nc|ENSG00000276234|O75478|TADA2A	nc|ENSG00000276234|O75478|TADA2A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		4	372.971588	1487.85725	-0.032109	-1.1976E-05	-0.12851	-4.7929E-05	-0.16061	-5.9905E-05	372.9715521396793	25.719	0.86432	26.379	25.941	26.805	0.65992	-0.009912	-5.4223E-05	NaN	2.084	62	16	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116750000			29388	10020	21056	21222							0.13283160117020998
LEFFKSKPD	9	Unmodified	_LEFFKSKPD_					0	0	0			REV__ENSG00000137200|ENST00000373451|CMTR1	REV__ENSG00000137200|ENST00000373451|CMTR1	MULTI-SECPEP	A375_MHC_IP_R1	1	556.4833374023438	2	555.795132	1109.57571	-0.78006	-0.00043355	-3.155	-0.0017536	-3.9351	-0.0021871	555.7935655364982	32.769	0.30359	32.769	32.634	32.938	0					7	5	2	0	0	0	0.74412	1	10653	10653		3.2813	0	1	1009100	+		29389	18992	21057	21223	28756	28756					0.0253060975749122
LEFGILEFDPS	11	Unmodified	_LEFGILEFDPS_					0	0	0		nc|ENSG00000100321|O43759-3|SYNGR1	nc|ENSG00000100321|O43759-3|SYNGR1	nc|ENSG00000100321|O43759-3|SYNGR1	MULTI-SECPEP	A375_MHC_IP_R1	1	633.053955078125	2	633.816261	1265.61797	-0.74633	-0.00047304	0.3785	0.0002399	-0.36784	-0.00023314	634.3179315051507	95.449	0.60645	95.449	95.058	95.665	0					17	11	2	0	0	0	0.90584	1	35049	35049		17.113	8.3675	1	1942600			29390	14506	21058	21224	28757	28757					-0.0042145962481754395
LEFHTLHVQR	10	Unmodified	_LEFHTLHVQR_					0	0	0			REV__nc|ENSG00000173120|Q9Y2K7-2|KDM2A	REV__nc|ENSG00000173120|Q9Y2K7-2|KDM2A	MULTI-MSMS	A375_MHC_IP_R2	2	427.6346130371094	3	427.235045	1278.6833	-0.50986	-0.00021783	0.048949	2.0913E-05	-0.46091	-0.00019692	427.235072457302	20.23	0.66011	20.841	20.399	21.059	0.61029					16	12	2	0	0	0	0.70741	1	6308	6308		8.9762	0.53194	1	1265600	+		29391	21195	21059	21225	28758	28758					0.055109994115582595
LEFIPFNW	8	Unmodified	_LEFIPFNW_					0	0	0			REV__ENSG00000152270|ENST00000282096|PDE3B	REV__ENSG00000152270|ENST00000282096|PDE3B	MULTI-SECPEP	A375_MHC_IP_R2	2	532.6369018554688	2	533.273835	1064.53312	-0.98945	-0.00052765	1.6725	0.00089189	0.68303	0.00036424	533.7761722642034	71.97	0.40448	72.704	72.567	72.971	0.73421					12	7	2	0	0	0	0.972	1	27265	27265		8.5933	0	1	1035800	+		29392	19799	21060	21226	28759	28759					0.0034325941990118736
LEFIVFYCTWW	11	Unmodified	_LEFIVFYCTWW_					0	0	0		ENST00000397981.7_1_19:7977974-7978379:+|nuORF	ENST00000397981.7_1_19:7977974-7978379:+|nuORF	ENST00000397981.7_1_19:7977974-7978379:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	503.3085021972656	3	502.909058	1505.70534	-0.27536	-0.00013848	-0.51352	-0.00025825	-0.78888	-0.00039674	503.24300359279835	72.725	0.45627	72.725	72.474	72.93	0					11	8	2	0	0	0	1.0004	1	26512	26512		1.2148	1.12	1	2218600			29393	11512	21061	21227	28760	28760					-0.027279569549136795
LEFLEWIT	8	Unmodified	_LEFLEWIT_					0	0	0			REV__nc|ENSG00000181409|Q6ZMQ8-3|AATK	REV__nc|ENSG00000181409|Q6ZMQ8-3|AATK	MULTI-MSMS	A375_MHC_IP_R1	1	526.1781005859375	2	525.778951	1049.54335	-0.35818	-0.00018832	2.6258	0.0013806	2.2676	0.0011923	525.7802600752036	56.252	0.50647	56.252	55.941	56.447	0					14	9	2	0	0	0	0.68907	1	20161	20161		38.151	2.107	1	2130800	+		29394	21648	21062	21228	28761	28761					0.020558223544639986
LEFLGIQPTL	10	Unmodified	_LEFLGIQPTL_					0	0	0		ENSG00000130234|ENST00000252519|ACE2;nc|ENSG00000130234|Q9BYF1-3|ACE2	ENSG00000130234|ENST00000252519|ACE2	ENSG00000130234|ENST00000252519|ACE2	MULTI-SECPEP	A375_MHC_IP_R2	2	377.62957763671875	3	377.55338	1129.63831	0.057819	2.183E-05	0.1733	6.5429E-05	0.23112	8.7259E-05	377.55338758533213	40.573	0.50779	41.347	41.082	41.59	0.77451					13	9	2	0	0	0	0.88918	1	15049	15049		2.8433	2.8433	1	3111700			29395	4231	21063	21229	28762	28762					0.0786775582566861
LEFLLILRF	9	Unmodified	_LEFLLILRF_					0	0	0		ENST00000406961.5_1_2:24787189-24807375:+|nuORF	ENST00000406961.5_1_2:24787189-24807375:+|nuORF	ENST00000406961.5_1_2:24787189-24807375:+|nuORF	MSMS	A375_MHC_IP_R1	1	388.6360778808594	3	388.577749	1162.71142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.543	1	48.543	48.043	49.043	0								0	0	0	0.15486	1	17131	17131		7.609	0.97858	1				29396	11605	21064	21230	28763	28763					0.13656929338958435
LEFLQKFEKNF	11	Unmodified	_LEFLQKFEKNF_					0	0	0		ENSG00000116039|ENST00000234396|ATP6V1B1	ENSG00000116039|ENST00000234396|ATP6V1B1	ENSG00000116039|ENST00000234396|ATP6V1B1	MULTI-MSMS	A375_MHC_IP_R2	2	481.65850830078125	3	481.594127	1441.76055	-0.83294	-0.00040114	-0.79817	-0.00038439	-1.6311	-0.00078553	481.5934431917819	57.906	0.25144	58.655	58.528	58.779	0.74894					7	4	2	0	0	0	0.73016	1	21911	21911		4.4062	1.7749	1	1511700			29397	3363	21065	21231	28764	28764					0.05734172837242113
LEFLQKFEKNF	11	Unmodified	_LEFLQKFEKNF_					0	0	0		ENSG00000116039|ENST00000234396|ATP6V1B1	ENSG00000116039|ENST00000234396|ATP6V1B1	ENSG00000116039|ENST00000234396|ATP6V1B1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	481.594127	1441.76055	-0.454	-0.00021864	-0.63085	-0.00030381	-1.0849	-0.00052246	481.593983182071	58.696	0.40588	58.696	58.43	58.836	0	0.020431	6.6185E-05	NaN	4.4062	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1243400			29398	3363	21065	21231							0.05734172837242113
LEFLQRKF	8	Unmodified	_LEFLQRKF_					0	0	0		nc|ENSG00000151062|Q7Z3S7-7|CACNA2D4;ENST00000542340.1_1_12:1909550-1920875:-|nuORF;ENST00000280663.12_1_12:1909550-1953688:-|nuORF;nc|ENSG00000151062|Q7Z3S7-2|CACNA2D4;nc|ENSG00000151062|Q7Z3S7-4|CACNA2D4;nc|ENSG00000151062|Q7Z3S7-6|CACNA2D4;ENSG00000151062|ENST00000382722|CACNA2D4;nc|ENSG00000151062|Q7Z3S7-5|CACNA2D4	nc|ENSG00000151062|Q7Z3S7-7|CACNA2D4	nc|ENSG00000151062|Q7Z3S7-7|CACNA2D4	MULTI-SECPEP	A375_MHC_IP_R2	2	540.68994140625	2	540.813659	1079.61277	-1.1554	-0.00062484	0.51461	0.00027831	-0.64076	-0.00034653	540.8138493354662	60.302	0.51233	61.047	60.801	61.314	0.74504					22	9	3	0	0	0	0.93661	1	22833	22833		6.7232	0	1	7057900			29399	5875	21066	21232	28765	28765					0.07614326093880663
LEFPAQELRKY	11	Unmodified	_LEFPAQELRKY_					0	0	0		SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	MSMS	A375_MHC_IP_R1	1	697.4404296875	2	697.377352	1392.74015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.952	1	76.952	76.452	77.452	0								0	0	0	0.16179	1	28059	28059		9.3831	1.7742	1				29400	9018	21067	21233	28766	28766					0.05949002177408147
LEFPFRKDL	9	Unmodified	_LEFPFRKDL_					0	0	0		nc|ENSG00000111880|O60942-3|RNGTT;nc|ENSG00000111880|O60942-2|RNGTT;nc|ENSG00000111880|O60942-4|RNGTT;ENSG00000111880|ENST00000369485|RNGTT	nc|ENSG00000111880|O60942-3|RNGTT	nc|ENSG00000111880|O60942-3|RNGTT	MULTI-MSMS	A375_MHC_IP_R1	1	389.28509521484375	3	388.885241	1163.63389	0.24675	9.5957E-05	-0.17796	-6.9206E-05	0.068789	2.6751E-05	388.8850714652002	77.805	0.46102	77.805	77.537	77.998	0					12	8	2	0	0	0	0.52905	1	28417	28417		17.863	0.42053	1	1446800			29401	14546	21068	21234	28767	28767					0.05862291402763731
LEFPFRKDL	9	Unmodified	_LEFPFRKDL_					0	0	0		nc|ENSG00000111880|O60942-3|RNGTT;nc|ENSG00000111880|O60942-2|RNGTT;nc|ENSG00000111880|O60942-4|RNGTT;ENSG00000111880|ENST00000369485|RNGTT	nc|ENSG00000111880|O60942-3|RNGTT	nc|ENSG00000111880|O60942-3|RNGTT	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	388.885241	1163.63389	0.24675	9.5957E-05	-0.17796	-6.9206E-05	0.068789	2.6751E-05	388.8850714652002	77.805	0.46102	77.805	77.537	77.998	0	0.13933	-0.00031526	NaN	17.863	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1446800			29402	14546	21068	21234							0.05862291402763731
LEFPFRKDL	9	Unmodified	_LEFPFRKDL_					0	0	0		nc|ENSG00000111880|O60942-3|RNGTT;nc|ENSG00000111880|O60942-2|RNGTT;nc|ENSG00000111880|O60942-4|RNGTT;ENSG00000111880|ENST00000369485|RNGTT	nc|ENSG00000111880|O60942-3|RNGTT	nc|ENSG00000111880|O60942-3|RNGTT	MULTI-MATCH	A375_MHC_IP_R2	2		3	388.885241	1163.63389	-0.15542	-6.044E-05	0.44151	0.0001717	0.28609	0.00011126	388.88533769869986	76.786	0.50397	77.527	77.401	77.905	0.74052	-0.13933	0.00040745	NaN	17.863	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1411800			29403	14546	21068	21234							0.05862291402763731
LEFRRLVL	8	Unmodified	_LEFRRLVL_					0	0	0		ENST00000464435.1_1_21:17172090-17177592:+|nuORF;nc|ENSG00000155313|Q9UHP3|USP25;nc|ENSG00000155313|Q9UHP3-1|USP25;ENSG00000155313|ENST00000400183|USP25	ENST00000464435.1_1_21:17172090-17177592:+|nuORF	ENST00000464435.1_1_21:17172090-17177592:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	523.7293090820312	2	523.329476	1044.6444	-0.68184	-0.00035683	-0.087958	-4.6031E-05	-0.7698	-0.00040286	523.3293660277811	51.188	0.40518	51.94	51.663	52.068	0.75225					11	7	2	0	0	0	0.96266	1	19298	19298		11.64	0	1	1614700			29404	6137	21069	21235	28768	28768					0.12386318847848088
LEFSHDDK	8	Unmodified	_LEFSHDDK_					0	0	0			REV__nc|ENSG00000198513|Q8WXF7-2|ATL1	REV__nc|ENSG00000198513|Q8WXF7-2|ATL1	MULTI-MSMS	A375_MHC_IP_R2	2	496.12945556640625	2	495.729989	989.445425	-0.37226	-0.00018454	-0.40981	-0.00020315	-0.78207	-0.00038769	495.72985069498253	91.344	1.1657	92.078	91.211	92.376	0.73451					30	22	2	0	0	0	0.77123	1	34729	34729		14.582	0	1	1897200	+		29405	22376	21070	21236	28769	28769					-0.049719862415145144
LEFVCRLKS	9	Unmodified	_LEFVCRLKS_					0	0	0			REV__ENST00000463370.5_1_20:57007450-57019288:+|nuORF	REV__ENST00000463370.5_1_20:57007450-57019288:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	365.27685546875	3	365.539077	1093.5954	-0.36061	-0.00013182	0.42324	0.00015471	0.06263	2.2894E-05	365.87330295243316	29.846	0.40469	30.545	30.385	30.79	0.69872					9	7	2	0	0	0	0.78353	1	10441	10441		6.1918	5.2296	1	1754300	+		29406	18276	21071	21237	28770	28770					0.05234662496582132
LEFVPAHGW	9	Unmodified	_LEFVPAHGW_					0	0	0		ENST00000567480.1_1_16:57484950-57490465:+|nuORF;nc|ENSG00000088682|O75208-2|COQ9;ENST00000566388.5_1_16:57481393-57486875:+|nuORF;ENST00000562426.5_1_16:57481417-57490911:+|nuORF;ENSG00000088682|ENST00000262507|COQ9	ENST00000567480.1_1_16:57484950-57490465:+|nuORF	ENST00000567480.1_1_16:57484950-57490465:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	527.6483764648438	2	528.269084	1054.52362	-0.54105	-0.00028582	0.094625	4.9987E-05	-0.44642	-0.00023583	528.2684657323192	87.688	0.30499	87.688	87.593	87.898	0					9	5	2	0	0	0	0.40041	1	32196	32196		30.225	7.0764	1	1483400			29407	1893	21072	21238	28771	28771					-0.001465088656232183
LEGASLVVGKD	11	Unmodified	_LEGASLVVGKD_					0	0	0		ENSG00000139344|ENST00000266736|AMDHD1	ENSG00000139344|ENST00000266736|AMDHD1	ENSG00000139344|ENST00000266736|AMDHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	362.9485778808594	3	363.20464	1086.59209	0.40881	0.00014848	0.60033	0.00021804	1.0091	0.00036652	363.2048077538923	35.723	0.40965	35.723	35.472	35.881	0					9	7	2	0	0	0	0.9836	1	11868	11868		6.2344	2.358	1	810430			29408	5072	21073	21239	28772	28772					0.052256909235893545
LEGDIHGQYY	10	Unmodified	_LEGDIHGQYY_					0	0	0		nc|ENSG00000172531|P62136-3|PPP1CA	nc|ENSG00000172531|P62136-3|PPP1CA	nc|ENSG00000172531|P62136-3|PPP1CA	MULTI-SECPEP	A375_MHC_IP_R1	1	598.1744384765625	2	597.774928	1193.5353	-0.27772	-0.00016602	-0.32087	-0.00019181	-0.5986	-0.00035783	597.7746225867432	44.139	0.66395	44.139	43.859	44.523	0					26	12	3	0	0	0	0.58856	1	15374	15374		41.956	27.117	1	4879400			29409	14768	21074	21240	28773	28773					-0.053723566329381356
LEGECHGQMI	10	Unmodified	_LEGECHGQMI_					0	0	0			REV__nc|ENSG00000165521|Q05BV3-2|EML5	REV__nc|ENSG00000165521|Q05BV3-2|EML5	MSMS	A375_MHC_IP_R2	2	558.6990966796875	2	558.744259	1115.47396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.679	1	89.41	88.91	89.91	0.7318								0	0	0	0.1524	1	33747	33747		13.042	0.51092	1		+		29410	20592	21075	21241	28774	28774					-0.07915327928230909
LEGEQLQSL	9	Unmodified	_LEGEQLQSL_					0	0	0			REV__CAPN10|p.F301L|1|0.3|ENSG00000142330|chr2:240594613-240594613|T/C|missense_variant	REV__CAPN10|p.F301L|1|0.3|ENSG00000142330|chr2:240594613-240594613|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	508.1404113769531	2	508.766571	1015.51859	-0.40793	-0.00020754	2.022	0.0010287	1.6141	0.00082118	508.76714800736795	54.847	0.20369	54.847	54.72	54.924	0					5	3	2	0	0	0	0.56537	1	19557	19557		17.113	1.8644	1	600030	+		29411	15572	21076	21242	28775	28775					0.011451424810957178
LEGEQLQSL	9	Unmodified	_LEGEQLQSL_					0	0	0			REV__CAPN10|p.F301L|1|0.3|ENSG00000142330|chr2:240594613-240594613|T/C|missense_variant	REV__CAPN10|p.F301L|1|0.3|ENSG00000142330|chr2:240594613-240594613|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9801940917969	2	508.766571	1015.51859	-1.0277	-0.00052288	0.37344	0.00018999	-0.6543	-0.00033289	508.76684235802753	57.804	0.30552	58.553	58.323	58.629	0.74894					8	5	2	0	0	0	0.59098	1	21805	21805		11.495	0	1	1493800	+		29412	15572	21076	21242	28776	28776					0.011451424810957178
LEGGCRATFDY	11	Unmodified	_LEGGCRATFDY_					0	0	0			REV__ENSG00000125508|ENST00000217188|SRMS	REV__ENSG00000125508|ENST00000217188|SRMS	MSMS	A375_MHC_IP_R1	1	616.3875732421875	2	616.274238	1230.53392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.861	1	77.861	77.361	78.361	0								0	0	0	0.16179	1	28416	28416		9.3831	2.0939	1		+		29413	18348	21077	21243	28777	28777					-0.07212313993341013
LEGGPGWLAE	10	Unmodified	_LEGGPGWLAE_					0	0	0		ENST00000485557.5_1_6:31938644-31939452:-|nuORF;ENST00000491327.5_1_6:31938351-31939452:-|nuORF;ENSG00000204348|ENST00000337523|DXO	ENST00000485557.5_1_6:31938644-31939452:-|nuORF	ENST00000485557.5_1_6:31938644-31939452:-|nuORF	MSMS	A375_MHC_IP_R1	1	514.6983032226562	2	514.756007	1027.49746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.659	1	56.659	56.159	57.159	0								0	0	0	0.15158	1	20302	20302		14.838	0.25658	1				29414	9432	21078	21244	28778	28778					-0.01518822827756594
LEGILLPKLFK	11	Unmodified	_LEGILLPKLFK_					0	0	0			REV__nc|ENSG00000134824|O95864-4|FADS2	REV__nc|ENSG00000134824|O95864-4|FADS2	MSMS	A375_MHC_IP_R2	2	635.9310913085938	2	635.910299	1269.80605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.792	1	89.524	89.024	90.024	0.7318								0	0	0	0.16302	1	33792	33792		2.9952	1.3426	1		+		29415	18805	21079	21245	28779	28779					0.18193443090262917
LEGKSIMTIV	10	Unmodified	_LEGKSIMTIV_					0	0	0		ENSG00000138442|ENST00000261015|WDR12;ENST00000478869.1_1_2:203760778-203765795:-|nuORF;WDR12|p.S127F|2|0.3|ENSG00000138442|chr2:202897374-202897374|G/A|missense_variant	ENSG00000138442|ENST00000261015|WDR12	ENSG00000138442|ENST00000261015|WDR12	MULTI-SECPEP	A375_MHC_IP_R1	1	363.63140869140625	3	364.210737	1089.61038	0.34901	0.00012711	-0.1838	-6.6942E-05	0.16521	6.0172E-05	364.21053791636217	50.104	1.1232	50.104	49.336	50.459	0					35	21	2	0	0	0	0.93194	1	17551	17551		1.4551	0.49284	1	1147500			29416	4995	21080	21246	28780	28780					0.06916109573921858
LEGKSIMTIV	10	Unmodified	_LEGKSIMTIV_					0	0	0		ENSG00000138442|ENST00000261015|WDR12;ENST00000478869.1_1_2:203760778-203765795:-|nuORF;WDR12|p.S127F|2|0.3|ENSG00000138442|chr2:202897374-202897374|G/A|missense_variant	ENSG00000138442|ENST00000261015|WDR12	ENSG00000138442|ENST00000261015|WDR12	MULTI-MATCH	A375_MHC_IP_R2	2		3	364.210737	1089.61038	-0.27916	-0.00010167	0.50729	0.00018476	0.22814	8.3089E-05	364.2107900101713	49.62	1.6243	50.377	49.588	51.212	0.75706	0.13629	0.00052947	NaN	1.4551	43	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1898600			29417	4995	21080	21246							0.06916109573921858
LEGNPDTHSW	10	Unmodified	_LEGNPDTHSW_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MSMS	A375_MHC_IP_R1	1	578.656494140625	2	578.256902	1154.49925	-0.48973	-0.00028319	0.11903	6.8827E-05	-0.37071	-0.00021436	578.2569285358541	36.689	0.81033	36.689	36.439	37.249	0					31	15	4	0	0	0	0.0045604	1	12264	12264		135.86	97.688	1	23014000			29418	5409	21081	21247	28781	28781					-0.07181813809802406
LEGNPDTHSW	10	Unmodified	_LEGNPDTHSW_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-SECPEP	A375_MHC_IP_R2	2	578.65673828125	2	578.256902	1154.49925	-0.35594	-0.00020583	0.052557	3.0392E-05	-0.30339	-0.00017544	578.2569003046572	35.952	0.76572	36.716	36.384	37.15	0.76338					35	14	4	0	0	0	0.018335	1	13030	13030		118.21	84.107	1	28903000			29419	5409	21081	21247	28782	28782					-0.07181813809802406
LEGNSNVI	8	Unmodified	_LEGNSNVI_					0	0	0			REV__ENST00000449684.6_1_2:109237798-109277146:+|nuORF;REV__nc|ENSG00000072163|Q7Z4I7-3|LIMS2	REV__ENST00000449684.6_1_2:109237798-109277146:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	423.6216735839844	2	423.2218	844.429047	-0.70761	-0.00029948	0.61746	0.00026132	-0.090157	-3.8156E-05	423.2220263441973	36.818	0.50751	37.589	37.359	37.867	0.7709					16	9	2	0	0	0	0.50167	1	13459	13459		42.095	0	1	2293400	+		29420	24878;16600	21082	21248	28783	28783					0.0006093259237331949
LEGVLINSAEA	11	Unmodified	_LEGVLINSAEA_					0	0	0			REV__nc|ENSG00000144290|Q6U841-4|SLC4A10	REV__nc|ENSG00000144290|Q6U841-4|SLC4A10	MULTI-SECPEP	A375_MHC_IP_R2	2	372.2646789550781	3	372.536278	1114.587	0.24932	9.288E-05	0.65946	0.00024567	0.90878	0.00033855	372.5366929011987	34.838	0.35275	35.602	35.425	35.778	0.76338					9	6	2	0	0	0	0.98524	1	12529	12529		5.8681	4.8546	1	1107900	+		29421	19416	21083	21249	28784	28784					0.034293870609417354
LEGWGRGVYI	10	Unmodified	_LEGWGRGVYI_					0	0	0		ENSG00000067191|ENST00000394303|CACNB1	ENSG00000067191|ENST00000394303|CACNB1	ENSG00000067191|ENST00000394303|CACNB1	MULTI-SECPEP	A375_MHC_IP_R1	1	575.1626586914062	2	575.306198	1148.59784	-0.26884	-0.00015467	-0.18176	-0.00010457	-0.4506	-0.00025923	575.3061159618405	94.215	0.70884	94.215	93.84	94.548	0					20	13	2	0	0	0	0.78945	1	34747	34747		13.906	4.5229	1	1869400			29422	1431	21084	21250	28785	28785					0.02948834225912833
LEHDPSSIY	9	Unmodified	_LEHDPSSIY_					0	0	0		ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B;HEATR5B|p.N1450Ifs*20|1|0.31|ENSG00000008869|chr2:37008789-37008789|A/-|frameshift_variant	ENSG00000008869|ENST00000233099|HEATR5B;HEATR5B|p.N1450Ifs*20|1|0.31|ENSG00000008869|chr2:37008789-37008789|A/-|frameshift_variant	ENSG00000008869|ENST00000233099|HEATR5B	MULTI-MSMS	A375_MHC_IP_R2	2	531.1503295898438	2	530.750921	1059.48729	-0.56983	-0.00030244	-0.37842	-0.00020085	-0.94825	-0.00050328	530.7507101910294	70.27	0.65936	71.004	70.743	71.402	0.73421					21	12	2	0	0	0	0.68216	1	26611	26611		8.5933	1.304	1	3763200			29423	965;14103	21085	21251	28786	28786					-0.04007430552974256
LEHEESFNI	9	Unmodified	_LEHEESFNI_					0	0	0			REV__tr|U7SLS9|U7SLS9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02160PE=4SV=1	REV__tr|U7SLS9|U7SLS9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02160PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	559.1436157226562	2	559.261653	1116.50875	-0.50587	-0.00028292	2.5352	0.0014178	2.0293	0.0011349	559.7656138859938	89.551	0.4565	89.551	89.323	89.78	0					9	8	2	0	0	0	0.62767	1	32881	32881		23.148	10.617	1	1241800	+		29424	28277	21086	21252	28787	28787					-0.044840455242592725
LEHEYIQNF	9	Unmodified	_LEHEYIQNF_					0	0	0		ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	MULTI-SECPEP	A375_MHC_IP_R1	1	597.1849975585938	2	596.785296	1191.55604	-0.4399	-0.00026253	-0.22312	-0.00013315	-0.66302	-0.00039568	596.7854726141862	58.056	0.60814	58.056	57.822	58.43	0					26	11	3	0	0	0	0.053904	1	20831	20831		85.272	37.523	1	7015000			29425	2286	21087	21253	28788	28788					-0.032077662532856266
LEHEYIQNF	9	Unmodified	_LEHEYIQNF_					0	0	0		ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	MULTI-MSMS	A375_MHC_IP_R2	2	597.1854858398438	2	596.785296	1191.55604	-0.92196	-0.00055021	-0.25311	-0.00015105	-1.1751	-0.00070127	596.7854913862222	57.339	0.76411	58.088	57.814	58.578	0.74895					33	14	3	0	0	0	0.047602	1	21654	21654		65.235	25.285	1	6863400			29426	2286	21087	21253	28789	28789					-0.032077662532856266
LEHFLTFLP	9	Unmodified	_LEHFLTFLP_					0	0	0		nc|ENSG00000010539|P98182-3|ZNF200;nc|ENSG00000010539|P98182-2|ZNF200;ENSG00000010539|ENST00000414144|ZNF200	nc|ENSG00000010539|P98182-3|ZNF200	nc|ENSG00000010539|P98182-3|ZNF200	MSMS	A375_MHC_IP_R2	2	372.9412841796875	3	372.874454	1115.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.107	1	51.861	51.361	52.361	0.75406								0	0	0	0.15486	1	19230	19230		2.4985	0	1				29427	984	21088	21254	28790	28790					0.04835503999743196
LEHHNFQY	8	Unmodified	_LEHHNFQY_					0	0	0			REV__ENST00000330514.4_1_17:42883048-42884925:-|nuORF	REV__ENST00000330514.4_1_17:42883048-42884925:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	545.0048217773438	2	544.251423	1086.48829	-1.1179	-0.00060842	0.0028691	1.5615E-06	-1.115	-0.00060686	544.2507268178786	58.352	0.75998	59.101	58.629	59.389	0.74894					24	14	3	0	0	0	0.94479	1	21986	21986		2.0598	0	1	2734800	+		29428	23619	21089	21255	28791	28791					-0.05149171393418328
LEHLQEINIA	10	Unmodified	_LEHLQEINIA_					0	0	0		nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L;ENST00000469726.5_1_1:17942561-18023872:+|nuORF;nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MULTI-SECPEP	A375_MHC_IP_R2	2	394.2833251953125	3	393.883789	1178.62954	-0.083296	-3.2809E-05	-0.89936	-0.00035424	-0.98266	-0.00038705	393.88346143025313	42.977	0.50476	43.749	43.472	43.977	0.7724					18	9	3	0	0	0	0.91796	1	15995	15995		17.049	11.18	1	3536900			29429	1597	21090	21256	28792	28792					0.04736782189183941
LEHLYHQVA	9	Unmodified	_LEHLYHQVA_					0	0	0			REV__ENST00000589215.5_1_18:21087981-21111645:+|nuORF	REV__ENST00000589215.5_1_18:21087981-21111645:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	556.2420654296875	2	555.290548	1108.56654	-0.46287	-0.00025703	-0.018372	-1.0202E-05	-0.48124	-0.00026723	555.2906855924714	72.782	0.86276	72.782	72.423	73.285	0					38	16	3	0	0	0	0.64971	1	26382	26382		16.942	3.0362	1	5511000	+		29430	26420	21091	21257	28793	28793					0.016602611918187904
LEHNFIEI	8	Unmodified	_LEHNFIEI_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	A375_MHC_IP_R1	1	507.1361083984375	2	507.766374	1013.5182	-0.3284	-0.00016675	-2.9288	-0.0014871	-3.2572	-0.0016539	508.2666851481295	97.769	0.50636	97.769	97.338	97.845	0					13	9	2	0	0	0	0.84294	1	35775	35775		24.021	0	1	707670	+		29431	18137	21092	21258	28794	28794					0.01197767551900597
LEHNFIEI	8	Unmodified	_LEHNFIEI_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	A375_MHC_IP_R2	2	507.13580322265625	2	507.766374	1013.5182	-0.91353	-0.00046386	-1.8924	-0.0009609	-2.8059	-0.0014248	507.7651940785829	96.868	0.50473	97.624	97.419	97.923	0.75586					15	9	2	0	0	0	0.84294	1	36837	36837		18.146	0	1	503700	+		29432	18137	21092	21258	28795	28795					0.01197767551900597
LEHRAQCHW	9	Unmodified	_LEHRAQCHW_					0	0	0			REV__nc|ENSG00000178233|Q8IW70-2|TMEM151B	REV__nc|ENSG00000178233|Q8IW70-2|TMEM151B	MULTI-SECPEP	A375_MHC_IP_R2	2	590.7169799804688	2	590.277449	1178.54035	-0.72209	-0.00042623	-2.2867	-0.0013498	-3.0088	-0.001776	590.2754005780141	50.416	0.71038	51.17	50.904	51.615	0.75406					24	13	3	0	0	0	0.76187	1	19101	19101		1.6526	0	1	2072500	+		29433	21497	21093	21259	28796	28796					-0.04178331251318923
LEHRGHAPY	9	Unmodified	_LEHRGHAPY_					0	0	0		ENSG00000125337|ENST00000643607|KIF25	ENSG00000125337|ENST00000643607|KIF25	ENSG00000125337|ENST00000643607|KIF25	MULTI-SECPEP	A375_MHC_IP_R2	2	539.6834106445312	2	540.27269	1078.53083	-0.87778	-0.00047424	-1.6023	-0.00086566	-2.48	-0.0013399	540.2717918525923	64.945	0.3055	65.684	65.511	65.817	0.73812					9	5	2	0	0	0	0.71541	1	24593	24593		16.942	0	1	679810			29434	3950	21094	21260	28797	28797					-0.005297762651935045
LEHRSLHKV	9	Unmodified	_LEHRSLHKV_					0	0	0			REV__SLC1A3|p.E495K|1|0.13|ENSG00000079215|chr5:36686123-36686123|G/A|missense_variant	REV__SLC1A3|p.E495K|1|0.13|ENSG00000079215|chr5:36686123-36686123|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	560.205322265625	2	559.825089	1117.63563	-0.83799	-0.00046913	-0.45642	-0.00025552	-1.2944	-0.00072464	559.8246707684531	35.821	0.3569	36.585	36.333	36.69	0.76338					9	6	2	0	0	0	0.78351	1	13013	13013		8.7454	0.58988	1	1864400	+		29435	27977	21095	21261	28798	28798					0.08151345211376793
LEHRTIDVN	9	Unmodified	_LEHRTIDVN_					0	0	0		ENSG00000104321|ENST00000262209|TRPA1	ENSG00000104321|ENST00000262209|TRPA1	ENSG00000104321|ENST00000262209|TRPA1	MULTI-SECPEP	A375_MHC_IP_R1	1	548.7078857421875	2	548.790912	1095.56727	-0.59093	-0.0003243	3.4754	0.0019073	2.8845	0.001583	549.2931137436141	83.558	0.35542	83.558	83.38	83.736	0					8	6	2	0	0	0	0.63327	1	30555	30555		13.042	0	1	616220			29436	2497	21096	21262	28799	28799					0.023310558408638826
LEHSFIKRY	9	Unmodified	_LEHSFIKRY_					0	0	0		ENST00000468058.1_1_19:7975099-7977313:+|nuORF;ENSG00000076984|ENST00000397979|MAP2K7;nc|ENSG00000076984|O14733-4|MAP2K7;nc|ENSG00000076984|O14733-3|MAP2K7;nc|ENSG00000076984|O14733-2|MAP2K7	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	398.6205749511719	3	398.220624	1191.64004	-0.36442	-0.00014512	0.73184	0.00029143	0.36742	0.00014632	398.2206682800548	27.002	0.3514	27.002	26.878	27.229	0					13	6	3	0	0	0	0.10637	1	8165	8165		49.527	17.49	1	4941500			29437	1642	21097	21263	28800	28800					0.05188809634296376
LEHSFIKRY	9	Unmodified	_LEHSFIKRY_					0	0	0		ENST00000468058.1_1_19:7975099-7977313:+|nuORF;ENSG00000076984|ENST00000397979|MAP2K7;nc|ENSG00000076984|O14733-4|MAP2K7;nc|ENSG00000076984|O14733-3|MAP2K7;nc|ENSG00000076984|O14733-2|MAP2K7	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	398.620361328125	3	398.220624	1191.64004	-0.47916	-0.00019081	0.6641	0.00026446	0.18494	7.3648E-05	398.2209117258015	26.365	0.40675	27.025	26.805	27.212	0.65992					13	7	2	0	0	0	0.23226	1	8918	8918		35.612	11.811	1	3869100			29438	1642	21097	21263	28801	28801					0.05188809634296376
LEHSFLVNL	9	Unmodified	_LEHSFLVNL_					0	0	0		STK32A|p.P81S|1|0.13|ENSG00000169302|chr5:147279379-147279379|C/T|missense_variant	STK32A|p.P81S|1|0.13|ENSG00000169302|chr5:147279379-147279379|C/T|missense_variant	STK32A|p.P81S|1|0.13|ENSG00000169302|chr5:147279379-147279379|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	536.6953125	2	536.295299	1070.57605	-0.58229	-0.00031228	2.7222	0.0014599	2.1399	0.0011476	536.2954310371946	105.62	0.96556	105.62	105.25	106.21	0					43	18	4	0	0	0	0.14422	1	38835	38835		61.357	2.6787	1	4229800			29439	29263	21098	21264	28802	28802					0.04358029477339187
LEHSFLVNL	9	Unmodified	_LEHSFLVNL_					0	0	0		STK32A|p.P81S|1|0.13|ENSG00000169302|chr5:147279379-147279379|C/T|missense_variant	STK32A|p.P81S|1|0.13|ENSG00000169302|chr5:147279379-147279379|C/T|missense_variant	STK32A|p.P81S|1|0.13|ENSG00000169302|chr5:147279379-147279379|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	536.295299	1070.57605	-0.80512	-0.00043178	2.837	0.0015214	2.0318	0.0010897	536.7989255602959	104.72	0.71138	105.49	105.16	105.87	0.76308	-0.068549	7.2379E-05	NaN	61.357	36	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5993500			29440	29263	21098	21264							0.04358029477339187
LEHWYITGL	9	Unmodified	_LEHWYITGL_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;ENST00000561258.1_1_15:62276000-62283926:-|nuORF	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-SECPEP	A375_MHC_IP_R2	2	566.7242431640625	2	566.295299	1130.57605	-0.23058	-0.00013058	-0.15769	-8.9301E-05	-0.38827	-0.00021988	566.295134654379	111.28	1.0262	112.01	111.8	112.83	0.73691					25	19	2	0	0	0	0.43707	1	42083	42083		15.847	0	1	2609800			29441	4172	21099	21265	28803	28803					0.01598029477304408
LEHYSELLV	9	Unmodified	_LEHYSELLV_					0	0	0		ENSG00000075702|ENST00000401500|WDR62;nc|ENSG00000075702|O43379|WDR62	ENSG00000075702|ENST00000401500|WDR62	ENSG00000075702|ENST00000401500|WDR62	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1923217773438	2	551.792589	1101.57063	-0.59651	-0.00032915	-0.5713	-0.00031524	-1.1678	-0.00064439	551.792232562633	100.45	0.46173	101.21	101.03	101.49	0.76278					13	8	2	0	0	0	0.71541	1	38118	38118		7.2892	0.56607	1	1423900			29442	1619	21100	21266	28804	28804					0.02390305894869016
LEIDLDLAE	9	Unmodified	_LEIDLDLAE_					0	0	0			REV__BRIP1|p.P1101L|1|0.33|ENSG00000136492|chr17:61683744-61683744|G/A|missense_variant	REV__BRIP1|p.P1101L|1|0.33|ENSG00000136492|chr17:61683744-61683744|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	515.1558227539062	2	515.76878	1029.52301	-0.45177	-0.00023301	1.1774	0.00060729	0.72568	0.00037428	516.2705259947832	55.881	0.91379	55.881	55.584	56.498	0					23	17	2	0	0	0	0.65246	1	20238	20238		21.747	3.6003	1	2113100	+		29443	15532	21101	21267	28805	28805					0.009426069040046059
LEIEDTFQQY	10	Unmodified	_LEIEDTFQQY_					0	0	0		ENST00000520332.5_1_8:8869238-8946074:+|nuORF;ENSG00000104626|ENST00000250263|ERI1	ENST00000520332.5_1_8:8869238-8946074:+|nuORF	ENST00000520332.5_1_8:8869238-8946074:+|nuORF	MSMS	A375_MHC_IP_R1	1	643.4136962890625	2	643.300975	1284.5874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.753	1	99.753	99.253	100.25	0								0	0	0	0.017489	1	36650	36650		75.761	49.493	1				29444	2522	21102	21268	28806	28806					-0.04351238009849112
LEIEDTFQQY	10	Unmodified	_LEIEDTFQQY_					0	0	0		ENST00000520332.5_1_8:8869238-8946074:+|nuORF;ENSG00000104626|ENST00000250263|ERI1	ENST00000520332.5_1_8:8869238-8946074:+|nuORF	ENST00000520332.5_1_8:8869238-8946074:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	643.7011108398438	2	643.300975	1284.5874	-0.55527	-0.0003572	0.42453	0.0002731	-0.13074	-8.4103E-05	643.3009685254788	99.138	0.45784	99.898	99.606	100.06	0.75977					16	8	2	0	0	0	0.10503	2	37611	37561;37611		62.573	39.836	1	1849800			29445	2522	21102	21268	28807;28808	28808					-0.04351238009849112
LEIEELLL	8	Unmodified	_LEIEELLL_					0	0	0			REV__ENSG00000132854|ENST00000371153|KANK4	REV__ENSG00000132854|ENST00000371153|KANK4	MULTI-SECPEP	A375_MHC_IP_R1	1	486.67376708984375	2	486.286608	970.558664	-0.3283	-0.00015965	1.8572	0.00090311	1.5289	0.00074346	486.2871527957876	68.562	0.55814	68.562	68.361	68.92	0					15	10	2	0	0	0	0.92636	1	24977	24977		11.64	0	1	976160	+		29446	18688	21103	21269	28809	28809					0.07220689151688475
LEIERLKKRL	10	Unmodified	_LEIERLKKRL_					0	0	0		nc|ENSG00000118407|Q7Z7B0-3|FILIP1;ENSG00000118407|ENST00000237172|FILIP1;nc|ENSG00000118407|Q7Z7B0-2|FILIP1	nc|ENSG00000118407|Q7Z7B0-3|FILIP1	nc|ENSG00000118407|Q7Z7B0-3|FILIP1	MSMS	A375_MHC_IP_R2	2	649.4644775390625	2	649.419354	1296.82415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.71	1	126	125.5	126.5	0.2951								0	0	0	0.15541	1	49109	49109		3.2813	0	1				29447	3540	21104	21270	28810	28810					0.18761578064982132
LEIEYLEEQ	9	Unmodified	_LEIEYLEEQ_					0	0	0		nc|ENSG00000109906|Q05516-2|ZBTB16;ENSG00000109906|ENST00000335953|ZBTB16;ENST00000541602.5_1_11:113934022-114057819:+|nuORF	nc|ENSG00000109906|Q05516-2|ZBTB16	nc|ENSG00000109906|Q05516-2|ZBTB16	MULTI-SECPEP	A375_MHC_IP_R1	1	389.2940368652344	3	389.192288	1164.55504	0.012276	4.7778E-06	1.6656	0.00064823	1.6779	0.00065301	389.1929985971586	24.192	1.0127	24.192	23.94	24.953	0					34	19	3	0	0	0	0.77396	1	6889	6889		1.9064	0.45126	1	4560900			29448	2900	21105	21271	28811	28811					-0.020660254128415545
LEIFASRKL	9	Unmodified	_LEIFASRKL_					0	0	0		ENST00000313956.4_1_19:53432472-53432580:-|nuORF;ENST00000438150.2_1_19:53304757-53304853:-|nuORF;ENST00000338230.3_2_19:53270830-53270923:-|nuORF	ENST00000313956.4_1_19:53432472-53432580:-|nuORF	ENST00000313956.4_1_19:53432472-53432580:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	359.95330810546875	3	359.553603	1075.63898	0.087896	3.1603E-05	-0.33536	-0.00012058	-0.24747	-8.8978E-05	359.55336467682	54.97	0.3551	54.97	54.72	55.075	0					10	6	2	0	0	0	0.75466	1	19674	19674		2.4985	0	1	1770900			29449	10645	21106	21272	28812	28812					0.1041859526535518
LEIFVMINN	9	Unmodified	_LEIFVMINN_					0	0	0		PKHD1L1|p.S1947F|1|0.2|ENSG00000205038|chr8:109448206-109448206|C/T|missense_variant	PKHD1L1|p.S1947F|1|0.2|ENSG00000205038|chr8:109448206-109448206|C/T|missense_variant	PKHD1L1|p.S1947F|1|0.2|ENSG00000205038|chr8:109448206-109448206|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	365.27313232421875	3	364.863449	1091.56852	-0.19515	-7.1204E-05	-1.7152	-0.00062581	-1.9104	-0.00069702	365.1968113995551	26.883	0.30854	27.543	27.414	27.722	0.65992					8	5	2	0	0	0	0.76187	1	9188	9188		7.609	1.4171	1	687000			29450	15191	21107	21273	28813	28813					0.026395538854103506
LEILCSNHY	9	Unmodified	_LEILCSNHY_					0	0	0			REV__ENSG00000197816|ENST00000529487|CCDC180	REV__ENSG00000197816|ENST00000529487|CCDC180	MULTI-SECPEP	A375_MHC_IP_R2	2	364.92303466796875	3	364.511187	1090.51173	-0.072699	-2.6499E-05	4.3574	0.0015883	4.2847	0.0015618	364.51250573298984	32.756	0.15163	33.493	33.367	33.518	0.73692					4	2	2	0	0	0	0.75466	1	11688	11688		8.1555	0	1	691460	+		29451	22318	21108	21274	28814	28814					-0.02990493671131844
LEILKCLIF	9	Unmodified	_LEILKCLIF_					0	0	0		ENST00000409774.5_1_2:37326175-37326319:+|nuORF	ENST00000409774.5_1_2:37326175-37326319:+|nuORF	ENST00000409774.5_1_2:37326175-37326319:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	364.61065673828125	3	364.555956	1090.64604	-0.055616	-2.0275E-05	-1.3914	-0.00050725	-1.447	-0.00052753	364.88950159020885	36.591	0.45747	36.591	36.287	36.745	0					13	8	2	0	0	0	0.63811	1	12190	12190		8.1555	0	1	569410			29452	11640	21109	21275	28815	28815					0.10434191821582317
LEILKCLIF	9	Unmodified	_LEILKCLIF_					0	0	0		ENST00000409774.5_1_2:37326175-37326319:+|nuORF	ENST00000409774.5_1_2:37326175-37326319:+|nuORF	ENST00000409774.5_1_2:37326175-37326319:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	364.555956	1090.64604	-0.22401	-8.1664E-05	-5.1624	-0.001882	-5.3865	-0.0019637	364.88828960059175	35.545	0.45616	36.308	36.081	36.537	0.76338	-0.14163	-0.00022318	NaN	8.1555	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1026400			29453	11640	21109	21275							0.10434191821582317
LEILKRKW	8	Unmodified	_LEILKRKW_					0	0	0		ENSG00000149403|ENST00000527524|GRIK4;ENST00000454993.6_1_19:42503025-42546997:-|nuORF;ENSG00000105737|ENST00000593562|GRIK5;nc|ENSG00000105737|Q16478-2|GRIK5	ENSG00000149403|ENST00000527524|GRIK4;ENST00000454993.6_1_19:42503025-42546997:-|nuORF	ENST00000454993.6_1_19:42503025-42546997:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	543.6661987304688	2	543.345126	1084.6757	-1.1974	-0.00065062	0.16198	8.8011E-05	-1.0355	-0.00056261	543.3451229986917	57.193	0.25434	57.943	57.867	58.121	0.75015					7	4	2	0	0	0	0.972	1	21606	21606		8.5933	3.8373	1	1377300			29454	5803;2634	21110	21276	28816	28816					0.1367489188194213
LEILKRKW	8	Unmodified	_LEILKRKW_					0	0	0		ENSG00000149403|ENST00000527524|GRIK4;ENST00000454993.6_1_19:42503025-42546997:-|nuORF;ENSG00000105737|ENST00000593562|GRIK5;nc|ENSG00000105737|Q16478-2|GRIK5	ENSG00000149403|ENST00000527524|GRIK4;ENST00000454993.6_1_19:42503025-42546997:-|nuORF	ENST00000454993.6_1_19:42503025-42546997:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	543.345126	1084.6757	-0.63312	-0.000344	-0.32699	-0.00017767	-0.9601	-0.00052167	543.3452620328035	58.252	0.30396	58.252	58.126	58.43	0	0.15445	-0.00046525	NaN	4.756	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1148300			29455	5803;2634	21110	21276							0.1367489188194213
LEINRQLLF	9	Unmodified	_LEINRQLLF_					0	0	0		ENSG00000176401|ENST00000326282|EID2B	ENSG00000176401|ENST00000326282|EID2B	ENSG00000176401|ENST00000326282|EID2B	MSMS	A375_MHC_IP_R1	1	573.352294921875	2	573.337498	1144.66044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.313	1	65.313	64.813	65.813	0								0	0	0	0.15486	1	23644	23644		7.9102	0.62092	1				29456	8021	21111	21277	28817	28817					0.0938998029407685
LEIPSRSFYRQ	11	Unmodified	_LEIPSRSFYRQ_					0	0	0		ENSG00000138615|ENST00000261883|CILP	ENSG00000138615|ENST00000261883|CILP	ENSG00000138615|ENST00000261883|CILP	MSMS	A375_MHC_IP_R2	2	698.7732543945312	2	698.372601	1394.73065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.634	1	99.393	98.893	99.893	0.75977								0	0	0	0.16232	1	37417	37417		6.6304	1.3335	1				29457	5007	21112	21278	28818	28818					0.04907233891890428
LEIQDLPSQV	10	Unmodified	_LEIQDLPSQV_					0	0	0		nc|ENSG00000140479|P29122-5|PCSK6;nc|ENSG00000140479|P29122-4|PCSK6;nc|ENSG00000140479|P29122-2|PCSK6;nc|ENSG00000140479|P29122-8|PCSK6;ENSG00000140479|ENST00000611716|PCSK6;nc|ENSG00000140479|P29122-7|PCSK6;nc|ENSG00000140479|P29122-6|PCSK6;PCSK6|p.T603I|1|0.32|ENSG00000140479|chr15:101366246-101366246|G/A|missense_variant;ENST00000558154.1_1_15:101906377-101922391:-|nuORF	nc|ENSG00000140479|P29122-5|PCSK6	nc|ENSG00000140479|P29122-5|PCSK6	MULTI-SECPEP	A375_MHC_IP_R1	1	381.6253967285156	3	381.208161	1140.60265	0.22914	8.7351E-05	0.71369	0.00027207	0.94284	0.00035942	381.2083471786692	28.198	0.40324	28.198	28.037	28.44	0					11	7	2	0	0	0	0.90513	1	8705	8705		10.899	1.1347	1	1843400			29458	5160	21113	21279	28819	28819					0.037976735779921
LEIQKKVQY	9	Unmodified	_LEIQKKVQY_					0	0	0			REV__ENSG00000121904|ENST00000373381|CSMD2	REV__ENSG00000121904|ENST00000373381|CSMD2	MULTI-SECPEP	A375_MHC_IP_R1	1	575.6198120117188	2	574.837331	1147.66011	-0.15513	-8.9176E-05	0.92151	0.00052972	0.76638	0.00044054	574.8371607106469	63.407	0.30471	63.407	63.173	63.477	0					8	5	2	0	0	0	0.69504	1	22902	22902		7.9102	0	1	1077000	+		29459	18178	21114	21280	28820	28820					0.0921856057423156
LEIRPNIVW	9	Unmodified	_LEIRPNIVW_					0	0	0		ENST00000518028.5_1_5:154239038-154242796:+|nuORF	ENST00000518028.5_1_5:154239038-154242796:+|nuORF	ENST00000518028.5_1_5:154239038-154242796:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	571.2335205078125	2	570.332216	1138.64988	0.15433	8.8021E-05	-0.32146	-0.00018334	-0.16713	-9.532E-05	570.331996662098	114.82	0.45305	114.82	114.62	115.07	0					17	8	3	0	0	0	0.61998	1	42122	42122		13.906	1.3745	1	3030600			29460	12967	21115	21281	28821	28821					0.08609997639632638
LEIRPNIVW	9	Unmodified	_LEIRPNIVW_					0	0	0		ENST00000518028.5_1_5:154239038-154242796:+|nuORF	ENST00000518028.5_1_5:154239038-154242796:+|nuORF	ENST00000518028.5_1_5:154239038-154242796:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	570.732177734375	2	570.332216	1138.64988	-0.10006	-5.7067E-05	0.10264	5.8537E-05	0.0025779	1.4702E-06	570.3322557750183	113.87	0.44931	114.58	114.33	114.78	0.70985					14	8	2	0	0	0	0.6324	1	42946	42946		13.042	0.80181	1	2929800			29461	12967	21115	21281	28822	28822					0.08609997639632638
LEISVYLFIP	10	Unmodified	_LEISVYLFIP_					0	0	0			REV__ATP10B|p.S382F|1|0.3|ENSG00000118322|chr5:160634590-160634590|G/A|missense_variant	REV__ATP10B|p.S382F|1|0.3|ENSG00000118322|chr5:160634590-160634590|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	399.27117919921875	3	398.565397	1192.67436	-0.32178	-0.00012825	-0.75011	-0.00029897	-1.0719	-0.00042722	398.5649734891762	24.042	0.30731	24.686	24.499	24.806	0.64368					9	5	3	0	0	0	0.91556	1	7796	7796		5.7834	0	1	3585700	+		29462	15473	21116	21282	28823	28823					0.08573213002500779
LEITDEAYAII	11	Unmodified	_LEITDEAYAII_					0	0	0			REV__tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1	REV__tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	417.58734130859375	3	417.555338	1249.64418	-0.48634	-0.00020307	-1.5285	-0.00063823	-2.0148	-0.0008413	417.55469246419267	25.95	0.35612	26.61	26.449	26.805	0.65992					8	6	2	0	0	0	0.73239	1	8721	8721		6.6235	1.9075	1	883380	+		29463	28173	21117	21283	28824	28824					0.02934809546673023
LEKAHLVEVQ	10	Unmodified	_LEKAHLVEVQ_					0	0	0		nc|ENSG00000158528|Q9ULJ8|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	MULTI-SECPEP	A375_MHC_IP_R1	1	582.533935546875	2	583.332413	1164.65027	-0.067537	-3.9396E-05	-0.19523	-0.00011389	-0.26277	-0.00015328	583.3324004465622	51.599	0.30338	51.599	51.475	51.778	0					7	5	2	0	0	0	0.92957	1	18281	18281		1.3295	0	1	1048800			29464	6310	21118	21284	28825	28825					0.07453372568852501
LEKAIEQNFT	10	Unmodified	_LEKAIEQNFT_					0	0	0			REV__tr|U7SX97|U7SX97_FUSNUtRNA(guanine-N(1)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmDPE=3SV=1	REV__tr|U7SX97|U7SX97_FUSNUtRNA(guanine-N(1)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmDPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	398.6116943359375	3	398.211794	1191.61355	-0.13623	-5.4247E-05	0.21743	8.6585E-05	0.081208	3.2338E-05	398.21193637157336	27.951	0.35546	28.63	28.401	28.757	0.67857					11	6	2	0	0	0	0.66308	1	9640	9640		14.218	0	1	3256500	+		29465	28617	21119	21285	28826	28826					0.025410759522856097
LEKAKNIFK	9	Unmodified	_LEKAKNIFK_					0	0	0		tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1	tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1	tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	363.941162109375	3	364.225486	1089.65463	-0.11339	-4.1298E-05	-0.53707	-0.00019561	-0.65045	-0.00023691	364.2254374345822	50.943	0.45416	51.697	51.462	51.917	0.75406					16	8	4	0	0	0	0.71541	1	19121	19121		2.2828	0	1	1506500			29466	29767	21120	21286	28827	28827					0.11338881782421595
LEKAMKEFKKQ	11	Unmodified	_LEKAMKEFKKQ_					0	0	0			REV__MCPH1|p.Y425Lfs*8|1|0.42|ENSG00000147316|chr8:6444994-6444995|-/T|frameshift_variant	REV__MCPH1|p.Y425Lfs*8|1|0.42|ENSG00000147316|chr8:6444994-6444995|-/T|frameshift_variant	MSMS	A375_MHC_IP_R1	1	690.3469848632812	2	690.389405	1378.76426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.66	1	111.66	111.16	112.16	0								0	0	0	0.16249	1	40932	40932		5.7319	0	1		+		29467	19584	21121	21287	28828	28828					0.09002519339423998
LEKCGIDAMI	10	Unmodified	_LEKCGIDAMI_					0	0	0		ENSG00000170871|ENST00000307659|KIAA0232	ENSG00000170871|ENST00000307659|KIAA0232	ENSG00000170871|ENST00000307659|KIAA0232	MULTI-SECPEP	A375_MHC_IP_R2	2	546.1923217773438	2	546.775028	1091.5355	-0.69274	-0.00037877	2.9967	0.0016385	2.304	0.0012598	547.2782836341273	91.116	0.35445	91.85	91.717	92.071	0.7345					8	6	2	0	0	0	0.8125	1	34746	34746		18.146	0	1	1544900			29468	7550	21122	21288	28829	28829					-0.0066039622895459615
LEKDEFHKLHD	11	Unmodified	_LEKDEFHKLHD_					0	0	0			REV__tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	REV__tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	706.255126953125	2	705.854241	1409.69393	-0.84468	-0.00059622	0.44603	0.00031483	-0.39865	-0.00028139	705.8552174408865	132.35	1.0133	132.35	131.93	132.95	0					50	19	4	0	0	0	0.73494	1	51004	51004		4.1895	0.90819	1	7148500	+		29469	28494	21123	21289	28830	28830					0.005469372753395874
LEKDLEIQLY	10	Unmodified	_LEKDLEIQLY_					0	0	0		ENSG00000249715|ENST00000624922|FER1L5;nc|ENSG00000249715|A0AVI2-4|FER1L5;nc|ENSG00000249715|A0AVI2-2|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	MSMS	A375_MHC_IP_R2	2	632.486572265625	2	632.345186	1262.67582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.715	1	73.451	72.951	73.951	0.73541								0	0	0	0.15508	1	27598	27598		4.3292	0	1				29470	9841	21124	21290	28831	28831					0.05498802300621719
LEKDLMNV	8	Unmodified	_LEKDLMNV_					0	0	0		ENST00000304060.9_1_19:11942994-11943045:+|nuORF	ENST00000304060.9_1_19:11942994-11943045:+|nuORF	ENST00000304060.9_1_19:11942994-11943045:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	480.69183349609375	2	481.254785	960.495018	-0.58708	-0.00028254	-0.45485	-0.0002189	-1.0419	-0.00050144	481.25433610803503	85.304	0.86742	85.304	84.749	85.616	0					25	16	2	0	0	0	0.81376	1	31254	31254		25.399	0	1	890720			29471	10559	21125	21291	28832	28832					0.013190054429287557
LEKDLRKKA	9	Unmodified	_LEKDLRKKA_					0	0	0		nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1;nc|ENSG00000187164|A0MZ66-2|SHTN1	nc|ENSG00000187164|A0MZ66-8|SHTN1	nc|ENSG00000187164|A0MZ66-8|SHTN1	MULTI-SECPEP	A375_MHC_IP_R1	1	550.7396240234375	2	550.842948	1099.67134	-0.49563	-0.00027301	-2.3877	-0.0013153	-2.8833	-0.0015883	550.8412630064148	70.682	0.40761	70.682	70.494	70.902	0					11	7	2	0	0	0	0.53748	1	25659	25659		24.021	13.197	1	1184400			29472	8809	21126	21292	28833	28833					0.1254938266836234
LEKDLRLVY	9	Unmodified	_LEKDLRLVY_					0	0	0		ENST00000419510.6_1_3:187454417-187454675:-|nuORF	ENST00000419510.6_1_3:187454417-187454675:-|nuORF	ENST00000419510.6_1_3:187454417-187454675:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	574.164306640625	2	574.837331	1147.66011	-0.17214	-9.8951E-05	0.32101	0.00018453	0.14887	8.5578E-05	574.8375011479238	54.722	0.65939	54.722	54.467	55.126	0					28	12	3	0	0	0	0.4261	1	19555	19555		24.021	0	1	9898000			29473	11717	21127	21293	28834	28834					0.09218560574208823
LEKDLRLVY	9	Unmodified	_LEKDLRLVY_					0	0	0		ENST00000419510.6_1_3:187454417-187454675:-|nuORF	ENST00000419510.6_1_3:187454417-187454675:-|nuORF	ENST00000419510.6_1_3:187454417-187454675:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	383.960205078125	3	383.560646	1147.66011	-0.54723	-0.0002099	0.37227	0.00014279	-0.17496	-6.7108E-05	383.5607457870969	53.762	0.71814	54.513	54.198	54.916	0.75105					37	13	4	0	0	0	0.29123	1	20267	20267		31.268	5.2476	1	21763000			29474	11717	21127	21293	28835	28835					0.09218560574208823
LEKDNSVPKYI	11	Unmodified	_LEKDNSVPKYI_					0	0	0		tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	MSMS	A375_MHC_IP_R2	2	435.9562683105469	3	435.906482	1304.69762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.498	1	21.108	20.608	21.608	0.61029								0	0	0	0.16232	1	6384	6384		6.6235	0	1				29475	29568	21128	21294	28836	28836					0.05745607049198043
LEKEARRRQRK	11	Unmodified	_LEKEARRRQRK_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	A375_MHC_IP_R2	2	736.8460693359375	2	735.442215	1468.86988	-0.63528	-0.00046721	0.94458	0.00069468	0.3093	0.00022747	736.44570182525	142.45	0.65976	142.48	141.98	142.64	0.030731					37	12	5	0	0	0	0.73672	1	55705	55705		2.4985	1.3051	1	10798000	+		29476	22304	21129	21295	28837	28837					0.15419616299914196
LEKEEEEE	8	Unmodified	_LEKEEEEE_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;L1TD1|p.E415K|1|0.62|ENSG00000240563|chr1:62210017-62210017|G/A|missense_variant;ENST00000559461.1_1_15:40475930-40477631:+|nuORF;nc|ENSG00000100592|Q9Y4D1-3|DAAM1;ENSG00000100592|ENST00000360909|DAAM1;nc|ENSG00000100592|Q9Y4D1|DAAM1;ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B	nc|ENSG00000196504|O75400-2|PRPF40A;ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MSMS	A375_MHC_IP_R2	2	517.5592041015625	2	517.729852	1033.44515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.863	1	70.597	70.097	71.097	0.73421								0	0	0	0.16876	1	26482	26482		8.5933	0	1				29477	9050;6220	21130	21296	28838	28838					-0.07023450752035387
LEKEEIRYY	9	Unmodified	_LEKEEIRYY_					0	0	0		ENST00000581564.1_1_17:38813911-38818272:-|nuORF;nc|ENSG00000264058|Q8N1A0-2|KRT222;ENSG00000213424|ENST00000394052|KRT222;CON__Q8N1A0	ENST00000581564.1_1_17:38813911-38818272:-|nuORF	ENST00000581564.1_1_17:38813911-38818272:-|nuORF	MSMS	A375_MHC_IP_R1	1	621.82275390625	2	621.821878	1241.6292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.67	1	29.67	29.17	30.17	0								0	0	0	0.15486	1	9329	9329		4.3292	0	1			+	29478	630	21131	21297	28839	28839					0.0180536246932661
LEKEKMDL	8	Unmodified	_LEKEKMDL_					0	0	0			REV__ENSG00000163029|ENST00000448223|SMC6	REV__ENSG00000163029|ENST00000448223|SMC6	MULTI-SECPEP	A375_MHC_IP_R1	1	502.99462890625	2	503.267893	1004.52123	-0.20275	-0.00010204	1.5589	0.00078452	1.3561	0.00068249	503.7705315493229	78.906	0.2537	78.906	78.807	79.061	0					6	4	2	0	0	0	0.87643	1	28852	28852		25.399	4.5281	1	402000	+		29479	20330	21132	21298	28840	28840					0.019152746144072808
LEKELRGR	8	Unmodified	_LEKELRGR_					0	0	0			REV__nc|ENSG00000149823|Q9UID3-2|VPS51	REV__nc|ENSG00000149823|Q9UID3-2|VPS51	MULTI-SECPEP	A375_MHC_IP_R2	2	501.1984558105469	2	500.79854	999.582528	-0.61326	-0.00030712	0.10155	5.0856E-05	-0.51171	-0.00025626	500.79845059030384	129.9	0.81082	130.12	129.89	130.7	0.21419					33	15	3	0	0	0	0.972	1	51018	51018		7.9102	0	1	73786000	+		29480	19699	21133	21299	28841	28841					0.08271967428720473
LEKEQESPRR	10	Unmodified	_LEKEQESPRR_					0	0	0		nc|ENSG00000135436|Q8IYM0-2|FAM186B;ENST00000533372.1_1_12:49976813-49999059:-|nuORF;ENSG00000135436|ENST00000257894|FAM186B	nc|ENSG00000135436|Q8IYM0-2|FAM186B	nc|ENSG00000135436|Q8IYM0-2|FAM186B	MSMS	A375_MHC_IP_R1	1	424.647216796875	3	424.561597	1270.66296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.738	1	55.738	55.238	56.238	0								0	0	0	0.15306	1	19945	19945		10.899	1.1347	1				29481	4681	21134	21300	28842	28842					0.03845783961082816
LEKERARQERQ	11	Unmodified	_LEKERARQERQ_					0	0	0			REV__nc|ENSG00000131149|Q14687-2|GSE1	REV__nc|ENSG00000131149|Q14687-2|GSE1	MSMS	A375_MHC_IP_R2	2	721.8955078125	2	721.894763	1441.77497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.66	1	113.39	112.89	113.89	0.72458								0	0	0	0.16249	1	42470	42470		5.7319	0	1		+		29482	18592	21135	21301	28843	28843					0.07175638038052057
LEKERERRQ	9	Unmodified	_LEKERERRQ_					0	0	0			REV__ENSG00000159450|ENST00000614923|TCHH	REV__ENSG00000159450|ENST00000614923|TCHH	MULTI-MSMS	A375_MHC_IP_R1	1	622.7481079101562	2	622.346917	1242.67928	-0.68096	-0.0004238	1.2123	0.0007545	0.53138	0.0003307	622.3469814514115	130.08	2.6932	130.08	128.68	131.38	0					120	52	4	0	0	0	0.62591	2	50007	50007;50613		5.7319	0.83484	1	102680000	+		29483	20121	21136	21302	28844;28845	28844					0.06764909917865225
LEKERERRQ	9	Unmodified	_LEKERERRQ_					0	0	0			REV__ENSG00000159450|ENST00000614923|TCHH	REV__ENSG00000159450|ENST00000614923|TCHH	MULTI-MSMS	A375_MHC_IP_R2	2	622.7461547851562	2	622.346917	1242.67928	-0.76108	-0.00047366	0.18088	0.00011257	-0.5802	-0.00036108	622.3469209426207	129.94	2.0281	130.16	129.59	131.62	0.21419					75	39	2	0	0	0	0.69884	2	50972	50972;51196		3.5965	0	1	84206000	+		29484	20121	21136	21302	28846;28847	28846					0.06764909917865225
LEKERERRQ	9	Unmodified	_LEKERERRQ_					0	0	0			REV__ENSG00000159450|ENST00000614923|TCHH	REV__ENSG00000159450|ENST00000614923|TCHH	MULTI-MSMS	A375_MHC_IP_R2	2	622.746337890625	2	622.346917	1242.67928	-0.71701	-0.00044623	0.26511	0.00016499	-0.4519	-0.00028124	622.3467886493758	131.59	0.96442	131.78	131.54	132.51	0.18953					33	18	3	0	0	0	0.69884	1	51783	51783		1.4819	0	1	7454300	+		29485	20121	21136	21302	28848	28848					0.06764909917865225
LEKERNMEE	9	Unmodified	_LEKERNMEE_					0	0	0			REV__WDR70|p.T182Hfs*2|1|0.07|ENSG00000082068|chr5:37437971-37437972|-/A|frameshift_variant	REV__WDR70|p.T182Hfs*2|1|0.07|ENSG00000082068|chr5:37437971-37437972|-/A|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	393.95196533203125	3	393.188772	1176.54449	-0.14439	-5.6772E-05	-1.3983	-0.0005498	-1.5427	-0.00060658	393.1882385071762	27.586	0.65886	28.264	27.945	28.604	0.67857					21	12	2	0	0	0	0.49205	1	9568	9568		26.021	2.2196	1	10970000	+		29486	16784	21137	21303	28849	28849					-0.036723313389074974
LEKESKAKNE	10	Unmodified	_LEKESKAKNE_					0	0	0		ENSG00000174799|ENST00000257287|CEP135;ENST00000515081.1_1_4:56820464-56832049:+|nuORF;nc|ENSG00000174799|Q66GS9-2|CEP135	ENSG00000174799|ENST00000257287|CEP135	ENSG00000174799|ENST00000257287|CEP135	MSMS	A375_MHC_IP_R2	2	392.6081237792969	3	392.547065	1174.61937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.324	1	46.089	45.589	46.589	0.76519								0	0	0	0.14804	1	16937	16937		14.218	0	1				29487	7903	21138	21304	28850	28850					0.039041744639462195
LEKEYRPQTY	10	Unmodified	_LEKEYRPQTY_					0	0	0			REV__ENST00000478206.1_1_3:9962138-9965788:+|nuORF	REV__ENST00000478206.1_1_3:9962138-9965788:+|nuORF	MSMS	A375_MHC_IP_R2	2	663.8357543945312	2	663.838059	1325.66157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.95	1	75.687	75.187	76.187	0.73752								0	0	0	0.15332	1	28449	28449		10.074	0.6908	1		+		29488	20402	21139	21305	28851	28851					0.011761498723444674
LEKFERSESG	10	Unmodified	_LEKFERSESG_					0	0	0		nc|ENSG00000149201|Q6ZN84-3|CCDC81;nc|ENSG00000149201|Q6ZN84-2|CCDC81;CCDC81|p.V576Afs*15|1|0.62|ENSG00000149201|chr11:86419963-86419972|TAAATAGAGT/-|frameshift_variant;ENSG00000149201|ENST00000445632|CCDC81	nc|ENSG00000149201|Q6ZN84-3|CCDC81	nc|ENSG00000149201|Q6ZN84-3|CCDC81	MULTI-SECPEP	A375_MHC_IP_R2	2	393.95196533203125	3	394.531415	1180.57242	-0.14979	-5.9096E-05	0.086854	3.4267E-05	-0.062933	-2.4829E-05	394.53152480945323	27.697	0.35334	28.376	28.251	28.604	0.67857					13	6	3	0	0	0	0.92445	1	9568	9568		14.218	3.9029	1	2829000			29489	319	21140	21306	28852	28852					-0.010646850871808056
LEKFHTETI	9	Unmodified	_LEKFHTETI_					0	0	0			REV__ENST00000552253.1_1_12:70986014-71031175:-|nuORF	REV__ENST00000552253.1_1_12:70986014-71031175:-|nuORF	MSMS	A375_MHC_IP_R1	1	559.6975708007812	2	559.298039	1116.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.22	1	130.22	129.72	130.72	0								0	0	0	0.043167	1	50095	50095		55.503	11.644	1		+		29490	18415	21141	21307	28853	28853					0.027897082691424657
LEKFHTETI	9	Unmodified	_LEKFHTETI_					0	0	0			REV__ENST00000552253.1_1_12:70986014-71031175:-|nuORF	REV__ENST00000552253.1_1_12:70986014-71031175:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	559.6974487304688	2	559.298039	1116.58152	-0.70593	-0.00039483	-0.26913	-0.00015052	-0.97506	-0.00054535	559.2980075676198	129.96	0.25215	130.17	130.05	130.3	0.2142					9	4	3	0	0	0	0.095851	1	51102	51102		51.415	7.5569	1	9895900	+		29491	18415	21141	21307	28854	28854					0.027897082691424657
LEKFNRDQK	9	Unmodified	_LEKFNRDQK_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-SECPEP	A375_MHC_IP_R2	2	392.9463806152344	3	393.21565	1176.62512	-0.23252	-9.1429E-05	-1.4322	-0.00056315	-1.6647	-0.00065458	393.2150576830677	39.919	0.50665	40.694	40.524	41.031	0.77451					11	9	2	0	0	0	0.59614	1	14755	14755		17.443	0	1	1240800			29492	1538	21142	21308	28855	28855					0.0438731776628174
LEKFVRKSH	9	Unmodified	_LEKFVRKSH_					0	0	0			REV__ENST00000233336.6_1_2:113260611-113260653:+|nuORF	REV__ENST00000233336.6_1_2:113260611-113260653:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	382.58074951171875	3	381.892619	1142.65603	0.049038	1.8727E-05	1.363	0.00052052	1.412	0.00053925	381.8929604444786	23.687	0.30475	23.687	23.584	23.889	0					8	5	2	0	0	0	0.74412	1	6601	6601		6.6304	5.8538	1	898890	+		29493	23076	21143	21309	28856	28856					0.09040515871197385
LEKHEKTLSSP	11	Unmodified	_LEKHEKTLSSP_					0	0	0			REV__ENSG00000158486|ENST00000698260|DNAH3	REV__ENSG00000158486|ENST00000698260|DNAH3	MULTI-SECPEP	A375_MHC_IP_R1	1	423.16058349609375	3	423.566348	1267.67722	0.17386	7.364E-05	-1.8903	-0.00080067	-1.7165	-0.00072703	423.899211201476	70.159	0.2027	70.159	70.034	70.237	0					5	3	2	0	0	0	0.99625	1	25493	25493		2.6312	0	1	821600	+		29494	20079	21144	21310	28857	28857					0.054084363893935006
LEKHFHFY	8	Unmodified	_LEKHFHFY_					0	0	0		ENSG00000182329|ENST00000498697|KIAA2012	ENSG00000182329|ENST00000498697|KIAA2012	ENSG00000182329|ENST00000498697|KIAA2012	MULTI-SECPEP	A375_MHC_IP_R1	1	374.59039306640625	3	374.190665	1119.55016	0.60253	0.00022546	-1.2982	-0.00048579	-0.69571	-0.00026033	374.1901731131656	21.693	0.86371	21.693	21.098	21.962	0					19	16	2	0	0	0	0.972	1	5742	5742		1.4819	0	1	1438900			29495	8399	21145	21311	28858	28858					-0.004828199742860306
LEKHKKYF	8	Unmodified	_LEKHKKYF_					0	0	0		ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	364.6107177734375	3	364.878198	1091.61277	0.15681	5.7217E-05	3.3652	0.0012279	3.522	0.0012851	364.87960942146526	43.382	0.15211	44.155	44.079	44.231	0.7724					4	2	2	0	0	0	0.972	1	16166	16166		1.6526	0	1	714460			29496	4734	21146	21312	28859	28859					0.0706232609388735
LEKHQLKKEA	10	Unmodified	_LEKHQLKKEA_					0	0	0			REV__ENSG00000154240|ENST00000535342|CEP112	REV__ENSG00000154240|ENST00000535342|CEP112	MULTI-MSMS	A375_MHC_IP_R2	2	408.66961669921875	3	408.575067	1222.70337	0.034093	1.393E-05	0.3903	0.00015947	0.42439	0.0001734	408.5752781906075	131.39	0.66238	131.58	131.29	131.95	0.18953					16	12	2	0	0	0	0.71946	1	51663	51663		3.5871	0.5148	1	3963700	+		29497	19872	21147	21313	28860	28860					0.10092750351509494
LEKIEKQQK	9	Unmodified	_LEKIEKQQK_					0	0	0		RALYL|p.R216C|1|0.17|ENSG00000184672|chr8:84873358-84873358|C/T|missense_variant;nc|ENSG00000184672|Q86SE5-2|RALYL;ENSG00000184672|ENST00000521268|RALYL;nc|ENSG00000184672|Q86SE5-3|RALYL	RALYL|p.R216C|1|0.17|ENSG00000184672|chr8:84873358-84873358|C/T|missense_variant	RALYL|p.R216C|1|0.17|ENSG00000184672|chr8:84873358-84873358|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	382.59271240234375	3	381.895917	1142.66592	0.047318	1.807E-05	-0.088737	-3.3888E-05	-0.04142	-1.5818E-05	381.89585130206797	29.022	0.4059	29.022	28.795	29.201	0					19	7	4	0	0	0	0.58268	1	9079	9079		15.739	0	1	10002000			29498	8601	21148	21314	28861	28861					0.10029659085921594
LEKIKIKKLLY	11	Unmodified	_LEKIKIKKLLY_					0	0	0			REV__tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1	REV__tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1	MSMS	A375_MHC_IP_R2	2	694.96484375	2	694.965606	1387.91666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.54	1	125.84	125.34	126.34	0.2951								0	0	0	0.16353	1	48995	48995		0.35063	0	1		+		29499	28247	21149	21315	28862	28862					0.2382166307852458
LEKIKKLDR	9	Unmodified	_LEKIKKLDR_					0	0	0		tr|U7SKQ3|U7SKQ3_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01974PE=4SV=1	tr|U7SKQ3|U7SKQ3_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01974PE=4SV=1	tr|U7SKQ3|U7SKQ3_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01974PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	382.295654296875	3	381.580041	1141.71829	-0.47718	-0.00018208	0.2625	0.00010017	-0.21467	-8.1915E-05	381.5801216834996	28.445	0.3047	29.124	28.909	29.214	0.67857					8	5	2	0	0	0	0.74597	1	9743	9743		8.4443	0	1	3309900			29500	29479	21150	21316	28863	28863					0.15310242219493375
LEKIVKKIMHR	11	Unmodified	_LEKIVKKIMHR_					0	0	0		ENST00000497003.5_1_2:178552959-178791632:-|nuORF;nc|ENSG00000128655|Q9HCR9-3|PDE11A;nc|ENSG00000128655|Q9HCR9-2|PDE11A;ENSG00000128655|ENST00000286063|PDE11A	ENST00000497003.5_1_2:178552959-178791632:-|nuORF	ENST00000497003.5_1_2:178552959-178791632:-|nuORF	MSMS	A375_MHC_IP_R2	2	697.802734375	2	697.936857	1393.85916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.36	1	129.6	129.1	130.1	0.23946								0	0	0	0.16258	1	50839	50839		5.2969	3.0141	1				29501	4157	21151	21317	28864	28864					0.17798497601256713
LEKKIHELE	9	Unmodified	_LEKKIHELE_					0	0	0		ENSG00000157827|ENST00000288670|FMNL2;nc|ENSG00000157827|Q96PY5|FMNL2	ENSG00000157827|ENST00000288670|FMNL2	ENSG00000157827|ENST00000288670|FMNL2	MULTI-MSMS	A375_MHC_IP_R1	1	380.6204528808594	3	380.220401	1137.63937	0.12601	4.7911E-05	0.25319	9.6268E-05	0.3792	0.00014418	380.2204938194746	28.041	0.55412	28.041	27.684	28.238	0					20	10	3	0	0	0	0.58268	1	8621	8621		15.739	1.3332	1	3391100			29502	6268	21152	21318	28865	28865					0.07605970194549627
LEKKKKKKK	9	Unmodified	_LEKKKKKKK_					0	0	0		ENST00000433510.2_1_17:46713640-46724167:-|nuORF	REV__ENST00000471326.5_1_1:154245614-154245674:+|nuORF	REV__ENST00000471326.5_1_1:154245614-154245674:+|nuORF	MSMS	A375_MHC_IP_R1	1	579.7210083007812	2	579.408258	1156.80196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.53	1	114.53	114.03	115.03	0								0	0	0	0.15486	1	42002	42002		2.0598	1.4583	1				29503	25115	21153	21319	28866	28866					0.22983398387214038
LEKKKKKKKIL	11	Unmodified	_LEKKKKKKKIL_					0	0	0			REV__ENST00000471326.5_1_1:154245614-154245674:+|nuORF	REV__ENST00000471326.5_1_1:154245614-154245674:+|nuORF	MSMS	A375_MHC_IP_R2	2	692.3798217773438	2	692.492322	1382.97009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.293	1	93.032	92.532	93.532	0.73902								0	0	0	0.16353	1	35101	35101		0.35063	0.043601	1				29504	25115	21154	21320	28867	28867					0.29392460581038904
LEKKKKKKKIL	11	Unmodified	_LEKKKKKKKIL_					0	0	0			REV__ENST00000471326.5_1_1:154245614-154245674:+|nuORF	REV__ENST00000471326.5_1_1:154245614-154245674:+|nuORF	MSMS	A375_MHC_IP_R2	2	692.6693115234375	2	692.492322	1382.97009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.205	1	95.955	95.455	96.455	0.75045								0	0	0	0.16331	1	36169	36169		1.4819	1.1313	1				29505	25115	21154	21320	28868	28868					0.29392460581038904
LEKKKKNREFY	11	Unmodified	_LEKKKKNREFY_					0	0	0		nc|ENSG00000118094|O43280-2|TREH;ENSG00000118094|ENST00000264029|TREH	nc|ENSG00000118094|O43280-2|TREH	nc|ENSG00000118094|O43280-2|TREH	MULTI-MSMS	A375_MHC_IP_R2	2	495.6971130371094	3	494.952426	1481.83545	-0.38555	-0.00019083	1.5715	0.00077781	1.1859	0.00058698	495.2872486581371	134	0.2536	134.16	134.01	134.26	0.16487					8	4	3	0	0	0	0.73807	1	52709	52709		1.2148	0.70888	1	3539200			29506	3523	21155	21321	28869	28869					0.11380355368487471
LEKKKKPHL	9	Unmodified	_LEKKKKPHL_					0	0	0		ENSG00000120440|ENST00000239587|TTLL2	ENSG00000120440|ENST00000239587|TTLL2	ENSG00000120440|ENST00000239587|TTLL2	MSMS	A375_MHC_IP_R1	1	374.27337646484375	3	374.244881	1119.71281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.08	1	33.08	32.58	33.58	0								0	0	0	0.15486	1	10757	10757		1.9064	0.79662	1				29507	3663	21156	21322	28870	28870					0.1577456342770347
LEKKKRNLQP	10	Unmodified	_LEKKKRNLQP_					0	0	0		ENST00000561208.5_1_15:37391669-37391768:-|nuORF	ENST00000561208.5_1_15:37391669-37391768:-|nuORF	ENST00000561208.5_1_15:37391669-37391768:-|nuORF	MSMS	A375_MHC_IP_R1	1	627.4679565429688	2	627.388054	1252.76155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.83	1	148.83	148.33	149.33	0								0	0	0	0.15629	1	56824	56824		0.40072	0	1				29508	13505	21157	21323	28871	28871					0.1452843199679137
LEKKLEEVR	9	Unmodified	_LEKKLEEVR_					0	0	0			REV__ENSG00000135736|ENST00000258214|CCDC102A	REV__ENSG00000135736|ENST00000258214|CCDC102A	MULTI-MSMS	A375_MHC_IP_R1	1	381.95263671875	3	381.895917	1142.66592	0.047318	1.807E-05	-0.088737	-3.3888E-05	-0.04142	-1.5818E-05	381.89585130206797	29.022	0.4059	29.022	28.795	29.201	0					19	7	4	0	0	0	0.54799	1	9071	9071		17.443	2.4855	1	10002000	+		29509	18880	21158	21324	28872	28872					0.10029659085921594
LEKKPNQY	8	Unmodified	_LEKKPNQY_					0	0	0			REV__tr|U7SSH0|U7SSH0_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01631PE=3SV=1	REV__tr|U7SSH0|U7SSH0_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01631PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	510.6800537109375	2	510.279649	1018.54475	-0.92738	-0.00047322	0.52997	0.00027043	-0.39742	-0.00020279	510.28003543191306	40.74	0.509	41.515	41.183	41.692	0.77451					14	9	2	0	0	0	0.73111	1	15113	15113		25.399	0	1	4764300	+		29510	28429	21159	21325	28873	28873					0.03621456443238458
LEKKRLLY	8	Unmodified	_LEKKRLLY_					0	0	0			REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF	REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	531.6710205078125	2	531.837134	1061.65972	-0.86438	-0.00045971	-0.44422	-0.00023625	-1.3086	-0.00069597	531.8368615423512	54.626	0.50832	55.377	55.118	55.626	0.75075					16	9	2	0	0	0	0.94479	1	20595	20595		13.508	0	1	6259500	+		29511	23900	21160	21326	28874	28874					0.13135185645046477
LEKLKEKERH	10	Unmodified	_LEKLKEKERH_					0	0	0		ANKRD11|p.P1341L|1|0.29|ENSG00000167522|chr16:89282520-89282520|G/A|missense_variant	ANKRD11|p.P1341L|1|0.29|ENSG00000167522|chr16:89282520-89282520|G/A|missense_variant	ANKRD11|p.P1341L|1|0.29|ENSG00000167522|chr16:89282520-89282520|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	655.7814331054688	2	655.382968	1308.75138	-0.83498	-0.00054723	-0.5154	-0.00033779	-1.3504	-0.00088502	655.3825087215033	131.58	6.1686	131.77	131.29	137.46	0.18953					405	120	8	0	0	0	0.72078	1	53018	53018		2.9952	0	1	1295200000			29512	140	21161	21327	28875	28875					0.10935824271541605
LEKLNKSVQT	10	Unmodified	_LEKLNKSVQT_					0	0	0			REV__ENST00000511924.1_1_X:118513713-118514064:+|nuORF	REV__ENST00000511924.1_1_X:118513713-118514064:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	581.0865478515625	2	580.337695	1158.66084	-0.17075	-9.9093E-05	-0.66112	-0.00038367	-0.83187	-0.00048277	580.3373428860161	135.06	1.4219	135.2	134.39	135.81	0.13901					37	27	2	0	0	0	0.92514	1	53160	53160		12.241	0	1	1288800	+		29513	25620	21162	21328	28876	28876					0.08785355223290026
LEKLNKSVQT	10	Unmodified	_LEKLNKSVQT_					0	0	0			REV__ENST00000511924.1_1_X:118513713-118514064:+|nuORF	REV__ENST00000511924.1_1_X:118513713-118514064:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	580.337695	1158.66084	-0.4884	-0.00028343	-0.19967	-0.00011588	-0.68807	-0.00039931	580.3374957596918	135.17	1.5242	135.17	134.37	135.9	0	-0.014382	0.00024467	NaN	12.241	45	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1432900	+		29514	25620	21162	21328							0.08785355223290026
LEKMKELSL	9	Unmodified	_LEKMKELSL_					0	0	0		ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	MULTI-MSMS	A375_MHC_IP_R2	2	364.5985107421875	3	364.210737	1089.61038	-0.19208	-6.9958E-05	-0.14003	-5.1E-05	-0.33211	-0.00012096	364.21064429222344	33.112	0.91431	33.865	33.635	34.55	0.75225					47	17	5	0	0	0	0.54799	1	11974	11974		17.443	0.87677	1	130660000			29515	9615	21163	21329	28877	28877					0.06916109573944595
LEKMKRKNF	9	Unmodified	_LEKMKRKNF_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-SECPEP	A375_MHC_IP_R2	2	398.96270751953125	3	398.565626	1192.67505	-0.3913	-0.00015596	-1.0876	-0.00043349	-1.4789	-0.00058944	398.56526653941154	23.302	0.35496	23.932	23.675	24.029	0.63014					8	6	2	0	0	0	0.79191	1	7369	7369		2.086	0.49373	1	1130700	+		29516	18320	21164	21330	28878	28878					0.08641729170585677
LEKNGFIERKQ	11	Unmodified	_LEKNGFIERKQ_					0	0	0		tr|U7SNE2|U7SNE2_FUSNUHTHmarR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01906PE=4SV=1	tr|U7SNE2|U7SNE2_FUSNUHTHmarR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01906PE=4SV=1	tr|U7SNE2|U7SNE2_FUSNUHTHmarR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01906PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	681.7779541015625	2	681.380426	1360.7463	-0.87206	-0.0005942	-2.7732	-0.0018896	-3.6453	-0.0024838	681.3784365420336	132.31	0.30382	132.31	132.18	132.49	0					8	5	2	0	0	0	0.73189	1	51046	51046		7.1017	0	1	2660000			29517	29548	21165	21331	28879	28879					0.08035520408952834
LEKNLEYVIPI	11	Unmodified	_LEKNLEYVIPI_					0	0	0			REV__nc|ENSG00000164708|P15259|PGAM2	REV__nc|ENSG00000164708|P15259|PGAM2	MSMS	A375_MHC_IP_R1	1	665.4121704101562	2	665.884478	1329.7544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.43	1	111.43	110.93	111.93	0								0	0	0	0.16249	1	40850	40850		5.7319	1.203	1		+		29518	27328	21166	21332	28880	28880					0.10271654605708136
LEKPDKPDI	9	Unmodified	_LEKPDKPDI_					0	0	0		FAM47B|p.E579K|1|0.98|ENSG00000189132|chrX:34944566-34944566|G/A|missense_variant	FAM47B|p.E579K|1|0.98|ENSG00000189132|chrX:34944566-34944566|G/A|missense_variant	FAM47B|p.E579K|1|0.98|ENSG00000189132|chrX:34944566-34944566|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	528.1328125	2	527.792589	1053.57063	-0.63523	-0.00033527	-0.57312	-0.00030249	-1.2083	-0.00063776	527.79287253106	38.479	0.25792	38.479	38.319	38.577	0					6	4	2	0	0	0	0.65246	1	13079	13079		21.747	0	1	1117000			29519	13974	21167	21333	28881	28881					0.04598305894865007
LEKPLIRILIL	11	Unmodified	_LEKPLIRILIL_					0	0	0		ENST00000283632.4_1_2:86968118-86979052:+|nuORF	ENST00000283632.4_1_2:86968118-86979052:+|nuORF	ENST00000283632.4_1_2:86968118-86979052:+|nuORF	MSMS	A375_MHC_IP_R1	1	660.9197387695312	2	660.952498	1319.89044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.92	1	116.92	116.42	117.42	0								0	0	0	0.16334	1	42900	42900		1.3295	0.13619	1				29520	10439	21168	21334	28882	28882					0.24329393907032681
LEKPNCLKVLL	11	Unmodified	_LEKPNCLKVLL_					0	0	0			REV__GLMN|p.L248Yfs*11|1|0.16|ENSG00000174842|chr1:92271645-92271645|A/-|frameshift_variant	REV__GLMN|p.L248Yfs*11|1|0.16|ENSG00000174842|chr1:92271645-92271645|A/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	635.7846069335938	2	635.383591	1268.75263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.79	1	143.81	143.31	144.31	0.024414								0	0	0	0.16312	1	56183	56183		2.4985	0.84587	1		+		29521	21309	21169	21335	28883	28883					0.12900322316113488
LEKQINSRF	9	Unmodified	_LEKQINSRF_					0	0	0		ENST00000459632.5_1_3:149532088-149570304:+|nuORF	ENST00000459632.5_1_3:149532088-149570304:+|nuORF	ENST00000459632.5_1_3:149532088-149570304:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	378.9296569824219	3	378.880379	1133.61931	0.22502	8.5255E-05	1.9917	0.0007546	2.2167	0.00083985	378.88033715333785	33.056	0.60799	33.056	32.785	33.393	0					27	11	3	0	0	0	0.6656	1	10874	10874		6.6304	2.754	1	8866600			29522	12151	21170	21336	28884	28884					0.05784219254610434
LEKQLVLTSL	10	Unmodified	_LEKQLVLTSL_					0	0	0		ENSG00000203734|ENST00000541398|ECT2L	ENSG00000203734|ENST00000541398|ECT2L	ENSG00000203734|ENST00000541398|ECT2L	MULTI-MSMS	A375_MHC_IP_R2	2	382.3020935058594	3	381.904301	1142.69108	-0.89437	-0.00034157	-2.1833	-0.00083382	-3.0777	-0.0011754	381.90186381078536	29.256	0.65501	29.955	29.73	30.385	0.69872					15	12	2	0	0	0	0.70174	1	10238	10238		11.518	0	1	3886300			29523	9393	21171	21337	28885	28885					0.12543713888476304
LEKQQREF	8	Unmodified	_LEKQQREF_					0	0	0			REV__nc|ENSG00000111859|Q14511-3|NEDD9	REV__nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	A375_MHC_IP_R1	1	539.726318359375	2	539.288005	1076.56146	-0.44073	-0.00023768	-0.82127	-0.0004429	-1.262	-0.00068058	539.2875326223518	71.64	0.70464	71.64	71.364	72.069	0					34	13	3	0	0	0	0.77624	1	26197	26197		8.5933	8.5933	1	22906000	+		29524	17699	21172	21338	28886	28886					0.026239573292059504
LEKQQSLIF	9	Unmodified	_LEKQQSLIF_					0	0	0			REV__ENSG00000213024|ENST00000352066|NUP62	REV__ENSG00000213024|ENST00000352066|NUP62	MULTI-SECPEP	A375_MHC_IP_R1	1	553.715576171875	2	553.316232	1104.61791	-0.50891	-0.00028159	-1.5624	-0.00086453	-2.0714	-0.0011461	553.315858128258	77.746	0.61395	77.746	77.537	78.15	0					14	11	2	0	0	0	0.34746	1	28368	28368		45.7	11.597	1	2289300	+		29525	22610	21173	21339	28887	28887					0.06978585165848017
LEKRNHVRL	9	Unmodified	_LEKRNHVRL_					0	0	0			REV__nc|ENSG00000175600|Q9HAC7-4|SUGCT	REV__nc|ENSG00000175600|Q9HAC7-4|SUGCT	MULTI-SECPEP	A375_MHC_IP_R2	2	583.2506713867188	2	582.851638	1163.68872	-0.38627	-0.00022514	-0.76119	-0.00044366	-1.1475	-0.0006688	582.8509202879646	131.42	0.46008	131.61	131.39	131.85	0.18953					17	8	4	0	0	0	0.80516	1	51713	51713		1.6526	0	1	3153000	+		29526	21354	21174	21340	28888	28888					0.11342722994027099
LEKRPTRT	8	Unmodified	_LEKRPTRT_					0	0	0		nc|ENSG00000155657|Q8WZ42-6|TTN	nc|ENSG00000155657|Q8WZ42-6|TTN	nc|ENSG00000155657|Q8WZ42-6|TTN	MSMS	A375_MHC_IP_R2	2	500.70599365234375	2	500.79854	999.582528	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.41	1	132.6	132.1	133.1	0.18953								0	0	0	0.16876	1	52087	52087		3.5965	0	1				29527	14693	21175	21341	28889	28889					0.08271967428709104
LEKRQKRRWYL	11	Unmodified	_LEKRQKRRWYL_					0	0	0			REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	MSMS	A375_MHC_IP_R2	2	526.0433959960938	3	525.979198	1574.91576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.77	1	137.86	137.36	138.36	0.083969								0	0	0	0.16358	1	54058	54058		0.073264	0.073264	1		+		29528	19865	21176	21342	28890	28890					0.15130261482181595
LEKRQKRRWYL	11	Unmodified	_LEKRQKRRWYL_					0	0	0			REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	MSMS	A375_MHC_IP_R2	2	526.0438842773438	3	525.979198	1574.91576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.49	1	138.57	138.07	139.07	0.083969								0	0	0	0.16358	1	54303	54303		0.073264	0.073264	1		+		29529	19865	21176	21342	28891	28891					0.15130261482181595
LEKRQKRRWYL	11	Unmodified	_LEKRQKRRWYL_					0	0	0			REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	MULTI-SECPEP	A375_MHC_IP_R2	2	526.724853515625	3	525.979198	1574.91576	-0.27476	-0.00014452	-0.31987	-0.00016824	-0.59463	-0.00031276	526.3135209198739	139.03	1.1025	139.09	138.65	139.75	0.059906					33	21	2	0	0	0	1.0012	1	54522	54522		0.40827	0.40827	1	2141000	+		29530	19865	21176	21342	28892	28892					0.15130261482181595
LEKRRFYRDRC	11	Unmodified	_LEKRRFYRDRC_					0	0	0			REV__ENSG00000164794|ENST00000524391|KCNV1	REV__ENSG00000164794|ENST00000524391|KCNV1	MSMS	A375_MHC_IP_R2	2	771.4088745117188	2	771.409526	1540.8045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.1	1	103.86	103.36	104.36	0.76428								0	0	0	0.16353	1	39048	39048		0.35063	0	1		+		29531	20516	21177	21343	28893	28893					0.05572878782572843
LEKRRILTW	9	Unmodified	_LEKRRILTW_					0	0	0		ENST00000502820.1_1_4:3205777-3205837:+|nuORF	ENST00000502820.1_1_4:3205777-3205837:+|nuORF	ENST00000502820.1_1_4:3205777-3205837:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	405.280029296875	3	405.583785	1213.72953	0.040131	1.6277E-05	-0.44761	-0.00018154	-0.40748	-0.00016527	405.58351539899684	41.91	0.40887	42.684	42.453	42.862	0.77451					11	7	2	0	0	0	0.775	1	15575	15575		10.8	2.8541	1	1594000			29532	12795	21178	21344	28894	28894					0.13121064313645547
LEKRRRERQI	10	Unmodified	_LEKRRRERQI_					0	0	0			REV__nc|ENSG00000119509|Q9Y283-2|INVS	REV__nc|ENSG00000119509|Q9Y283-2|INVS	MULTI-MSMS	A375_MHC_IP_R2	2	692.8204956054688	2	692.418208	1382.82186	-0.49085	-0.00033987	2.593	0.0017955	2.1022	0.0014556	692.4202063121911	142.48	1.1166	142.51	141.62	142.74	0.030731					31	21	2	0	0	0	0.72607	1	55704	55704		1.4819	0.15237	1	4108400	+		29533	18074	21179	21345	28895	28895					0.14576542379904822
LEKRVLRTL	9	Unmodified	_LEKRVLRTL_					0	0	0		ENST00000243563.7_1_19:41257077-41257221:+|nuORF	ENST00000243563.7_1_19:41257077-41257221:+|nuORF	ENST00000243563.7_1_19:41257077-41257221:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	376.9804382324219	3	376.580152	1126.71863	0.45361	0.00017082	-0.16054	-6.0458E-05	0.29307	0.00011036	376.5801124787671	39.309	0.60876	39.309	38.933	39.541	0					21	11	3	0	0	0	0.70759	1	13420	13420		15.739	0	1	4081200			29534	10173	21180	21346	28896	28896					0.16033661939377453
LEKSFTTFY	9	Unmodified	_LEKSFTTFY_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	A375_MHC_IP_R1	1	568.6860961914062	2	568.28714	1134.55973	-0.33837	-0.00019229	-1.0253	-0.00058268	-1.3637	-0.00077497	568.2866184151277	74.841	1.0133	74.841	74.4	75.413	0					36	19	4	0	0	0	0.6898	1	27246	27246		7.9102	0.62092	1	7436000	+		29535	16799	21181	21347	28897	28897					-0.0021709647942316224
LEKSKRSSK	9	Unmodified	_LEKSKRSSK_					0	0	0		nc|ENSG00000136153|Q8WWI1-3|LMO7;ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7;nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7	nc|ENSG00000136153|Q8WWI1-3|LMO7	nc|ENSG00000136153|Q8WWI1-3|LMO7	MULTI-MSMS	A375_MHC_IP_R2	2	532.2164916992188	2	531.81693	1061.61931	-0.62649	-0.00033318	-0.90606	-0.00048186	-1.5326	-0.00081504	531.8162932442572	125.63	1.4115	125.93	125.47	126.88	0.2951					31	20	2	0	0	0	0.70307	1	48827	48827		6.7232	6.7232	1	21064000			29536	4759	21182	21348	28898	28898					0.09096219254638527
LEKSKRSSK	9	Unmodified	_LEKSKRSSK_					0	0	0		nc|ENSG00000136153|Q8WWI1-3|LMO7;ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7;nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7	nc|ENSG00000136153|Q8WWI1-3|LMO7	nc|ENSG00000136153|Q8WWI1-3|LMO7	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	531.81693	1061.61931	-0.62649	-0.00033318	-0.90606	-0.00048186	-1.5326	-0.00081504	531.8162932442572	125.63	1.4115	125.93	125.47	126.88	0.2951	0.0033256	-0.00016457	NaN	6.7232	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21064000			29537	4759	21182	21348							0.09096219254638527
LEKSKVLHARE	11	Unmodified	_LEKSKVLHARE_					0	0	0		ZDBF2|p.E2131K|1|0.43|ENSG00000204186|chr2:206310919-206310919|G/A|missense_variant	ZDBF2|p.E2131K|1|0.43|ENSG00000204186|chr2:206310919-206310919|G/A|missense_variant	ZDBF2|p.E2131K|1|0.43|ENSG00000204186|chr2:206310919-206310919|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	655.78173828125	2	655.382968	1308.75138	-0.83498	-0.00054723	-0.5154	-0.00033779	-1.3504	-0.00088502	655.3825087215033	131.58	6.1686	131.77	131.29	137.46	0.18953					405	120	8	0	0	0	0.7342	1	51860	51860		4.897	2.3985	1	1295200000			29538	30192	21183	21349	28899	28899					0.10935824271564343
LEKTDPVTF	9	Unmodified	_LEKTDPVTF_					0	0	0			REV__DENND1A|p.R161K|1|0.55|ENSG00000119522|chr9:123667051-123667051|C/T|missense_variant	REV__DENND1A|p.R161K|1|0.55|ENSG00000119522|chr9:123667051-123667051|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	525.241455078125	2	525.279315	1048.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.942	1	49.699	49.199	50.199	0.75737								0	0	0	0.1535	1	18383	18383		15.847	0	1		+		29539	15985	21184	21350	28900	28900					0.02174617003538515
LEKTRYRK	8	Unmodified	_LEKTRYRK_					0	0	0			REV__chr14:54408789-54411487|270|11.24|0.5|4.5|+|1|CDKN3,None|2	REV__chr14:54408789-54411487|270|11.24|0.5|4.5|+|1|CDKN3,None|2	MSMS	A375_MHC_IP_R1	1	365.2694396972656	3	365.220735	1092.64038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.254	1	41.254	40.754	41.754	0								0	0	0	0.16876	1	14232	14232		8.7454	0	1		+		29540	15706	21185	21351	28901	28901					0.0977622935411091
LEKTSSLNAL	10	Unmodified	_LEKTSSLNAL_					0	0	0			REV__ENST00000570934.5_1_17:4098183-4145738:-|nuORF;REV__ENST00000575955.1_1_17:4120189-4167236:-|nuORF	REV__ENST00000570934.5_1_17:4098183-4145738:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	538.70263671875	2	538.303321	1074.59209	-0.61785	-0.00033259	-0.052694	-2.8365E-05	-0.67055	-0.00036096	538.3033191437814	57.102	0.61125	57.102	56.753	57.364	0					18	11	2	0	0	0	0.055108	1	20471	20471		87.258	3.8295	1	4679200	+		29541	21913;26310	21186	21352	28902	28902					0.057776909235599305
LEKTSSLNAL	10	Unmodified	_LEKTSSLNAL_					0	0	0			REV__ENST00000570934.5_1_17:4098183-4145738:-|nuORF;REV__ENST00000575955.1_1_17:4120189-4167236:-|nuORF	REV__ENST00000570934.5_1_17:4098183-4145738:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	538.7027587890625	2	538.303321	1074.59209	-1.1451	-0.00061644	0.37901	0.00020402	-0.76614	-0.00041241	538.3033265264979	56.255	0.66449	57.005	56.591	57.255	0.75015					30	12	3	0	0	0	0.095473	1	21272	21272		87.258	7.8312	1	6435700	+		29542	21913;26310	21186	21352	28903	28903					0.057776909235599305
LEKTWEES	8	Unmodified	_LEKTWEES_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8;DNAH5|p.P4041S|2|0.19|ENSG00000039139|chr5:13721158-13721158|G/A|missense_variant;ENSG00000039139|ENST00000265104|DNAH5	nc|ENSG00000124721|Q96JB1-2|DNAH8;ENSG00000039139|ENST00000265104|DNAH5	nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-MSMS	A375_MHC_IP_R1	1	511.64520263671875	2	511.245472	1020.47639	-0.3843	-0.00019647	-0.038145	-1.9502E-05	-0.42244	-0.00021597	511.24533951767415	88.314	0.61183	88.314	88.052	88.663	0					28	11	3	0	0	0	0.71318	1	32409	32409		30.637	3.7529	1	4038100			29543	3923;1157	21187	21353	28904	28904					-0.03302832927272448
LEKTWEES	8	Unmodified	_LEKTWEES_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8;DNAH5|p.P4041S|2|0.19|ENSG00000039139|chr5:13721158-13721158|G/A|missense_variant;ENSG00000039139|ENST00000265104|DNAH5	nc|ENSG00000124721|Q96JB1-2|DNAH8;ENSG00000039139|ENST00000265104|DNAH5	nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-MSMS	A375_MHC_IP_R2	2	511.64501953125	2	511.245472	1020.47639	-0.66482	-0.00033988	0.0071851	3.6734E-06	-0.65763	-0.00033621	511.24537986834184	87.633	1.0624	88.364	88.066	89.128	0.7318					32	20	3	0	0	0	0.71318	1	33310	33310		30.637	3.7529	1	4779400			29544	3923;1157	21187	21353	28905	28905					-0.03302832927272448
LEKTWEES	8	Unmodified	_LEKTWEES_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8;DNAH5|p.P4041S|2|0.19|ENSG00000039139|chr5:13721158-13721158|G/A|missense_variant;ENSG00000039139|ENST00000265104|DNAH5	nc|ENSG00000124721|Q96JB1-2|DNAH8;ENSG00000039139|ENST00000265104|DNAH5	nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	511.245472	1020.47639	-0.66482	-0.00033988	0.0071851	3.6734E-06	-0.65763	-0.00033621	511.24537986834184	87.633	1.0624	88.364	88.066	89.128	0.7318	0.02502	3.0084E-05	NaN	30.637	32	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4779400			29545	3923;1157	21187	21353							-0.03302832927272448
LEKVLNLAQ	9	Unmodified	_LEKVLNLAQ_					0	0	0		IL2|p.E88K|1|0.26|ENSG00000109471|chr4:122453799-122453799|C/T|missense_variant	IL2|p.E88K|1|0.26|ENSG00000109471|chr4:122453799-122453799|C/T|missense_variant	IL2|p.E88K|1|0.26|ENSG00000109471|chr4:122453799-122453799|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	514.2242431640625	2	514.310949	1026.60735	-0.60138	-0.00030929	0.54269	0.00027911	-0.058689	-3.0184E-05	514.3113539340605	76.779	0.50938	76.779	76.471	76.981	0					13	9	2	0	0	0	0.67539	1	28030	28030		16.149	8.8599	1	1411600			29546	14155	21188	21354	28906	28906					0.09510602511409161
LEKVRLRLKKV	11	Unmodified	_LEKVRLRLKKV_					0	0	0			REV__CCDC102B|p.E466K|1|0.38|ENSG00000150636|chr18:69011066-69011066|G/A|missense_variant	REV__CCDC102B|p.E466K|1|0.38|ENSG00000150636|chr18:69011066-69011066|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	691.4678955078125	2	691.471921	1380.92929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.77	1	104.77	104.27	105.27	0								0	0	0	0.16353	1	38469	38469		0.35063	0	1		+		29547	15589	21189	21355	28907	28907					0.2540611926137899
LEKWKRLV	8	Unmodified	_LEKWKRLV_					0	0	0			REV__nc|ENSG00000164509|Q8NI17-8|IL31RA	REV__nc|ENSG00000164509|Q8NI17-8|IL31RA	MULTI-SECPEP	A375_MHC_IP_R1	1	357.4490051269531	3	357.89396	1070.66005	-0.35694	-0.00012775	1.1845	0.00042394	0.82759	0.00029619	357.89442093852415	68.076	0.3549	68.076	67.854	68.209	0					10	6	2	0	0	0	0.972	1	24594	24594		1.4819	0	1	657330	+		29548	27324	21190	21356	28908	28908					0.12754605364875715
LEKWQEQY	8	Unmodified	_LEKWQEQY_					0	0	0		ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	MULTI-SECPEP	A375_MHC_IP_R2	2	374.9446716308594	3	375.185468	1122.53457	-0.075547	-2.8344E-05	0.12859	4.8244E-05	0.05304	1.99E-05	375.1854771211228	38.45	0.40456	39.225	38.946	39.351	0.77451					13	7	2	0	0	0	0.972	1	14183	14183		10.074	0	1	3152900			29549	8991	21191	21357	28909	28909					-0.021791512819845593
LELAFSILYDP	11	Unmodified	_LELAFSILYDP_					0	0	0		nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2	nc|ENSG00000062598|Q96JJ3-3|ELMO2	nc|ENSG00000062598|Q96JJ3-3|ELMO2	MULTI-SECPEP	A375_MHC_IP_R1	1	428.12969970703125	3	427.563945	1279.67001	-0.22185	-9.4854E-05	0.53399	0.00022831	0.31214	0.00013346	427.8983749538892	19.67	0.40699	19.67	19.42	19.827	0					9	6	2	0	0	0	0.99331	1	4917	4917		0.36667	0	1	1263300			29550	1332	21192	21358	28910	28910					0.041357037889838466
LELCRKEIREV	11	Unmodified	_LELCRKEIREV_					0	0	0			REV__ENST00000480578.1_1_3:9691345-9695454:+|nuORF	REV__ENST00000480578.1_1_3:9691345-9695454:+|nuORF	MSMS	A375_MHC_IP_R2	2	694.4610595703125	2	694.389936	1386.76532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.52	1	109.27	108.77	109.77	0.74977								0	0	0	0.16249	1	40976	40976		5.7319	0.43497	1		+		29551	20404	21193	21359	28911	28911					0.08740733708305015
LELDEREW	8	Unmodified	_LELDEREW_					0	0	0			REV__ENST00000550386.5_1_12:44166747-44166840:+|nuORF	REV__ENST00000550386.5_1_12:44166747-44166840:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	364.6214294433594	3	363.845223	1088.51384	-0.13972	-5.0836E-05	-1.0103	-0.00036759	-1.15	-0.00041843	364.17884033234145	70.896	0.55725	71.631	71.402	71.959	0.73421					25	10	3	0	0	0	0.972	1	26924	26924		1.6526	0	1	5048800	+		29552	26034	21194	21360	28912	28912					-0.026877416616798655
LELHPAPESP	10	Unmodified	_LELHPAPESP_					0	0	0			REV__ENST00000290200.6_1_21:34668724-34668823:+|nuORF	REV__ENST00000290200.6_1_21:34668724-34668823:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	364.2569580078125	3	363.857351	1088.55022	-0.40106	-0.00014593	0.064936	2.3627E-05	-0.33613	-0.0001223	363.857232363656	38.486	0.91785	39.26	39.047	39.965	0.77451					29	17	2	0	0	0	0.69172	1	14191	14191		12.175	0	1	3093100	+		29553	23351	21195	21361	28913	28913					0.009491352350551097
LELHRPNLL	9	Unmodified	_LELHRPNLL_					0	0	0		PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant;nc|ENSG00000118482|Q92576-2|PHF3;ENSG00000118482|ENST00000262043|PHF3	PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant	PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	369.2889404296875	3	368.888986	1103.64513	0.38404	0.00014167	-0.38431	-0.00014177	-0.00026237	-9.6786E-08	368.88884670691345	43.303	0.50682	44.076	43.876	44.383	0.7724					13	9	2	0	0	0	0.68705	1	16160	16160		8.1555	0.54658	1	2273600			29554	3542	21196	21362	28914	28914					0.09745113496887825
LELIDIYI	8	Unmodified	_LELIDIYI_					0	0	0			REV__GABRG3|p.H435Y|1|0.18|ENSG00000182256|chr15:27532780-27532780|C/T|missense_variant	REV__GABRG3|p.H435Y|1|0.18|ENSG00000182256|chr15:27532780-27532780|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	496.2942810058594	2	496.289151	990.563749	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.351	1	92.085	91.585	92.585	0.7345								0	0	0	0.16876	1	34751	34751		15.768	0	1		+		29555	26662	21197	21363	28915	28915					0.06808993014271891
LELIEHRL	8	Unmodified	_LELIEHRL_					0	0	0			REV__ENST00000561685.1_1_16:15168568-15177423:-|nuORF;REV__nc|ENSG00000103472|A6NIE6|RRN3P2	REV__ENST00000561685.1_1_16:15168568-15177423:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	511.9880065917969	2	511.803291	1021.59203	-0.87224	-0.00044642	-1.5475	-0.00079202	-2.4197	-0.0012384	511.8036050986281	41.472	0.25422	41.472	41.317	41.571	0					6	4	2	0	0	0	0.972	1	14313	14313		7.9102	0	1	667210	+		29556	16842;24672	21198	21364	28916	28916					0.08209735714228827
LELILLPVTGL	11	Unmodified	_LELILLPVTGL_					0	0	0		WDR6|p.S14L|1|0.46|ENSG00000178252|chr3:49007472-49007472|C/T|missense_variant	WDR6|p.S14L|1|0.46|ENSG00000178252|chr3:49007472-49007472|C/T|missense_variant	WDR6|p.S14L|1|0.46|ENSG00000178252|chr3:49007472-49007472|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	591.2804565429688	2	590.881207	1179.74786	-0.68287	-0.0004035	1.1968	0.00070718	0.51395	0.00030368	590.881133891028	145.01	0.14903	145.01	144.92	145.07	0					4	2	2	0	0	0	0.7362	1	55611	55611		2.9952	0	1	329420			29557	30160	21199	21365	28917	28917					0.16517761444993084
LELIRTRYTEA	11	Unmodified	_LELIRTRYTEA_					0	0	0			REV__nc|ENSG00000144674|Q13439-3|GOLGA4	REV__nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	A375_MHC_IP_R1	1	455.9890441894531	3	455.589265	1363.74596	-0.24053	-0.00010958	0.2272	0.00010351	-0.013332	-6.0739E-06	455.58929133506274	60.262	0.55999	60.262	60.006	60.566	0					15	10	2	0	0	0	0.73239	1	21681	21681		6.6235	0	1	2034300	+		29558	19439	21200	21366	28918	28918					0.07864100689107545
LELITRLHQYI	11	Unmodified	_LELITRLHQYI_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-2|DICER1	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MSMS	A375_MHC_IP_R1	1	467.0076599121094	3	466.941638	1397.80309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.26	1	137.26	136.76	137.76	0								0	0	0	0.16334	1	52842	52842		0.45452	0	1				29559	2211	21201	21367	28919	28919					0.12009567965469614
LELITRLHQYI	11	Unmodified	_LELITRLHQYI_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-2|DICER1	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MSMS	A375_MHC_IP_R1	1	467.0077209472656	3	466.941638	1397.80309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.62	1	139.62	139.12	140.12	0								0	0	0	0.16302	1	53658	53658		1.2148	0.76031	1				29560	2211	21201	21367	28920	28920					0.12009567965469614
LELKCLEKW	9	Unmodified	_LELKCLEKW_					0	0	0		ENST00000264995.7_1_3:131188541-131190034:-|nuORF	ENST00000264995.7_1_3:131188541-131190034:-|nuORF	ENST00000264995.7_1_3:131188541-131190034:-|nuORF	MSMS	A375_MHC_IP_R2	2	581.3143310546875	2	581.32046	1160.62637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.234	1	85.97	85.47	86.47	0.73601								0	0	0	0.15486	1	32402	32402		7.2892	1.0834	1				29561	10342	21202	21368	28921	28921					0.05247815810821521
LELKSMIEK	9	Unmodified	_LELKSMIEK_					0	0	0		PLA2G5|p.D24E|1|0.45|ENSG00000127472|chr1:20086114-20086114|C/G|missense_variant	PLA2G5|p.D24E|1|0.45|ENSG00000127472|chr1:20086114-20086114|C/G|missense_variant	PLA2G5|p.D24E|1|0.45|ENSG00000127472|chr1:20086114-20086114|C/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	363.941162109375	3	364.210737	1089.61038	-0.27868	-0.0001015	0.10968	3.9948E-05	-0.169	-6.1551E-05	364.54520783652526	51.595	1.8759	52.347	51.207	53.083	0.75225					53	36	2	0	0	0	0.73363	1	19121	19121		2.086	0	1	1807500			29562	15192	21203	21369	28922	28922					0.06916109573921858
LELKTRQKI	9	Unmodified	_LELKTRQKI_					0	0	0			REV__ENSG00000108055|ENST00000361804|SMC3	REV__ENSG00000108055|ENST00000361804|SMC3	MULTI-SECPEP	A375_MHC_IP_R2	2	377.30804443359375	3	376.908157	1127.70264	-0.53285	-0.00020084	-0.10902	-4.1092E-05	-0.64188	-0.00024193	376.9080612754902	28.902	1.5065	29.6	29.03	30.537	0.69872					62	29	3	0	0	0	0.69381	1	10204	10204		15.248	0.8431	1	39629000	+		29563	17511	21204	21370	28923	28923					0.14389955702472434
LELKVLRKVVL	11	Unmodified	_LELKVLRKVVL_					0	0	0			REV__ENST00000302418.4_1_10:32324564-32326195:-|nuORF	REV__ENST00000302418.4_1_10:32324564-32326195:-|nuORF	MSMS	A375_MHC_IP_R1	1	655.0606689453125	2	655.450123	1308.88569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.19	1	124.19	123.69	124.69	0								0	0	0	0.16334	1	46658	46658		1.3295	0	1		+		29564	23436	21205	21371	28924	28924					0.24360509764255767
LELLAPLGEL	10	Unmodified	_LELLAPLGEL_					0	0	0			REV__nc|ENSG00000100399|Q6NUI6-2|CHADL	REV__nc|ENSG00000100399|Q6NUI6-2|CHADL	MULTI-MSMS	A375_MHC_IP_R2	2	534.7208251953125	2	534.320983	1066.62741	-0.76319	-0.00040779	0.37133	0.00019841	-0.39186	-0.00020938	534.3210597667563	131.53	0.25507	131.72	131.59	131.85	0.18953					10	4	3	0	0	0	0.35113	1	51753	51753		43.858	11.073	1	16970000	+		29565	17086	21206	21372	28925	28925					0.09676353451391151
LELLAPLGEL	10	Unmodified	_LELLAPLGEL_					0	0	0			REV__nc|ENSG00000100399|Q6NUI6-2|CHADL	REV__nc|ENSG00000100399|Q6NUI6-2|CHADL	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1943359375	2	534.320983	1066.62741	-0.76319	-0.00040779	0.37133	0.00019841	-0.39186	-0.00020938	534.3210597667563	131.53	0.25507	131.72	131.59	131.85	0.18953					10	4	3	0	0	0	0.57412	1	51732	51732		36.127	3.3413	1	16970000	+		29566	17086	21206	21372	28926	28926					0.09676353451391151
LELLCHLDN	9	Unmodified	_LELLCHLDN_					0	0	0		ENSG00000032389|ENST00000382125|EIPR1	ENSG00000032389|ENST00000382125|EIPR1	ENSG00000032389|ENST00000382125|EIPR1	MSMS	A375_MHC_IP_R2	2	357.2270202636719	3	357.18307	1068.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.867	1	18.463	17.963	18.963	0.59616								0	0	0	0.15486	1	5280	5280		0.23584	0	1				29567	1116	21207	21373	28927	28927					-0.004142071540627512
LELLFSRGP	9	Unmodified	_LELLFSRGP_					0	0	0			REV__ARMC7|p.P134L|1|0.23|ENSG00000125449|chr17:75128842-75128842|C/T|missense_variant	REV__ARMC7|p.P134L|1|0.23|ENSG00000125449|chr17:75128842-75128842|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	515.6630859375	2	516.297842	1030.58113	-0.94064	-0.00048565	2.5548	0.001319	1.6141	0.00083338	516.3000118883743	72.284	0.50693	73.019	72.77	73.277	0.73473					11	9	2	0	0	0	0.47368	1	27366	27366		14.838	0	1	1031700	+		29568	15451	21208	21374	28928	28928					0.06706333339957382
LELLLRVLPL	10	Unmodified	_LELLLRVLPL_					0	0	0		ENSG00000167208|ENST00000330943|SNX20	ENSG00000167208|ENST00000330943|SNX20	ENSG00000167208|ENST00000330943|SNX20	MSMS	A375_MHC_IP_R1	1	589.7816772460938	2	589.897192	1177.77983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.229	1	80.229	79.729	80.729	0								0	0	0	0.1552	1	29293	29293		3.9444	0	1				29569	7170	21209	21375	28929	28929					0.1980517391880312
LELLNYLAA	9	Unmodified	_LELLNYLAA_					0	0	0		ENSG00000109606|ENST00000336812|DHX15;ENST00000503562.1_1_4:24541566-24543501:-|nuORF	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	A375_MHC_IP_R1	1	510.69189453125	2	510.292225	1018.5699	-0.33038	-0.00016859	-0.19595	-9.999E-05	-0.52632	-0.00026858	510.2921047709814	62.715	0.66639	62.715	62.351	63.018	0					21	12	2	0	0	0	0.50702	1	22645	22645		32.305	0	1	2855600			29570	2877	21210	21376	28930	28930					0.06135511245793168
LELLNYLAA	9	Unmodified	_LELLNYLAA_					0	0	0		ENSG00000109606|ENST00000336812|DHX15;ENST00000503562.1_1_4:24541566-24543501:-|nuORF	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	A375_MHC_IP_R2	2	510.6737060546875	2	510.292225	1018.5699	-1.0181	-0.00051954	1.7892	0.00091301	0.77107	0.00039347	510.29216729752386	61.86	1.1132	62.603	62.22	63.333	0.74263					39	15	5	0	0	0	0.35487	1	23412	23412		36.127	5.4905	1	3176900			29571	2877	21210	21376	28931	28931					0.06135511245793168
LELLRRRV	8	Unmodified	_LELLRRRV_					0	0	0			REV__nc|ENSG00000196169|Q2TAC6-3|KIF19	REV__nc|ENSG00000196169|Q2TAC6-3|KIF19	MULTI-SECPEP	A375_MHC_IP_R1	1	352.9776611328125	3	352.232975	1053.6771	-0.25198	-8.8756E-05	0.30779	0.00010841	0.055807	1.9657E-05	352.23289493567955	27.709	0.35343	27.709	27.533	27.887	0					12	6	2	0	0	0	0.95424	1	8468	8468		13.906	0.86358	1	1627200	+		29572	22166	21211	21377	28932	28932					0.15240525970693852
LELPARKVH	9	Unmodified	_LELPARKVH_					0	0	0		ENST00000395184.5_1_4:86396590-86491711:+|nuORF	ENST00000395184.5_1_4:86396590-86491711:+|nuORF	ENST00000395184.5_1_4:86396590-86491711:+|nuORF	MSMS	A375_MHC_IP_R1	1	354.97186279296875	3	354.885464	1061.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.79	1	32.79	32.29	33.29	0								0	0	0	0.15486	1	10627	10627		2.7352	0.45242	1				29573	11467	21212	21378	28933	28933					0.10621130842469029
LELPYSIHAF	10	Unmodified	_LELPYSIHAF_					0	0	0		ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17;ENST00000530469.1_1_11:43400830-43413141:+|nuORF	ENSG00000052841|ENST00000039989|TTC17	ENSG00000052841|ENST00000039989|TTC17	MULTI-SECPEP	A375_MHC_IP_R1	1	396.6094665527344	3	397.213246	1188.61791	-0.28093	-0.00011159	-0.26552	-0.00010547	-0.54645	-0.00021706	397.2129250078397	46.876	0.5111	46.876	46.596	47.107	0					14	9	2	0	0	0	0.85226	1	16461	16461		3.3196	0	1	1591400			29574	1242	21213	21379	28934	28934					0.031145851658493484
LELRPLRRQ	9	Unmodified	_LELRPLRRQ_					0	0	0			REV__ENST00000581937.1_1_18:9678609-9679128:-|nuORF	REV__ENST00000581937.1_1_18:9678609-9679128:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	590.086669921875	2	590.867289	1179.72002	-0.44748	-0.0002644	-0.73397	-0.00043368	-1.1815	-0.00069808	590.8666582564941	134.89	0.96434	135.03	134.8	135.76	0.13901					41	18	4	0	0	0	0.78798	1	53268	53268		7.2892	2.96	1	20518000	+		29575	26354	21214	21380	28935	28935					0.13735296028130506
LELSEYIN	8	Unmodified	_LELSEYIN_					0	0	0			REV__CLTC|p.K429I|1|0.72|ENSG00000141367|chr17:59661561-59661561|A/T|missense_variant	REV__CLTC|p.K429I|1|0.72|ENSG00000141367|chr17:59661561-59661561|A/T|missense_variant	MSMS	A375_MHC_IP_R2	2	490.6655578613281	2	490.75039	979.486227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.773	1	88.505	88.005	89.005	0.7318								0	0	0	0.16876	1	33389	33389		32.117	3.6301	1		+		29576	15803	21215	21381	28936	28936					-0.004336449219181304
LELSGNRL	8	Unmodified	_LELSGNRL_					0	0	0		ENSG00000131409|ENST00000652263|LRRC4B	ENSG00000131409|ENST00000652263|LRRC4B	ENSG00000131409|ENST00000652263|LRRC4B	MULTI-MSMS	A375_MHC_IP_R2	2	451.6585998535156	2	451.258717	900.50288	-0.17145	-7.7369E-05	-0.37723	-0.00017023	-0.54868	-0.0002476	451.2585210152614	68.916	0.75974	69.651	69.323	70.082	0.73511					32	14	3	0	0	0	0.31691	1	26082	26082		57.471	0	1	9043900			29577	4327	21216	21382	28937	28937					0.048649007547169276
LELVGTGP	8	Unmodified	_LELVGTGP_					0	0	0		ENST00000471981.1_1_1:168195291-168195327:+|nuORF	ENST00000471981.1_1_1:168195291-168195327:+|nuORF	ENST00000471981.1_1_1:168195291-168195327:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	393.6335144042969	2	393.223811	784.433069	0.19168	7.5373E-05	0.20796	8.1775E-05	0.39964	0.00015715	393.22389643753564	43.367	0.56035	43.367	43.146	43.706	0					14	10	2	0	0	0	0.97144	1	15135	15135		14.582	0	1	973550			29578	12363	21217	21383	28938	28938					0.032230220861038106
LELYKINAK	9	Unmodified	_LELYKINAK_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-SECPEP	A375_MHC_IP_R1	1	364.95361328125	3	364.553492	1090.63865	0.24001	8.7497E-05	-0.0065454	-2.3861E-06	0.23347	8.5111E-05	364.55346952715485	40.787	0.55441	40.787	40.509	41.063	0					21	10	3	0	0	0	0.75519	1	14048	14048		3.8763	0	1	4867700			29579	3195	21218	21384	28939	28939					0.09695175545516577
LEMERSPQL	9	Unmodified	_LEMERSPQL_					0	0	0		ENSG00000161544|ENST00000293230|CYGB	ENSG00000161544|ENST00000293230|CYGB	ENSG00000161544|ENST00000293230|CYGB	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1800537109375	2	551.781699	1101.54884	-0.68699	-0.00037907	-2.8823	-0.0015904	-3.5693	-0.0019695	551.7804137088825	89.839	0.56292	90.571	90.339	90.902	0.7318					14	10	2	0	0	0	0.75164	1	34202	34202		5.7319	1.7875	1	1716000			29580	6476	21219	21385	28940	28940					0.0021317787463885907
LEMFILVLQ	9	Unmodified	_LEMFILVLQ_					0	0	0		HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant;HTT|p.S2672Rfs*25|1|0.31|ENSG00000197386|chr4:3228913-3228913|T/-|frameshift_variant;ENSG00000197386|ENST00000355072|HTT;ENST00000510626.5_1_4:3131970-3189635:+|nuORF	HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant	HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	552.7132568359375	2	553.319928	1104.6253	-0.58603	-0.00032426	-3.9728	-0.0021982	-4.5589	-0.0025225	553.8191751878471	43.655	0.35255	44.424	44.329	44.682	0.7691					8	6	2	0	0	0	0.73363	1	16301	16301		10.824	0	1	801680			29581	9151	21220	21386	28941	28941					0.07717601441936495
LEMMKKHV	8	Unmodified	_LEMMKKHV_					0	0	0		ENSG00000176092|ENST00000308182|CRYBG2	ENSG00000176092|ENST00000308182|CRYBG2	ENSG00000176092|ENST00000308182|CRYBG2	MULTI-SECPEP	A375_MHC_IP_R2	2	508.1573486328125	2	508.274998	1014.53544	-0.80227	-0.00040777	-0.61102	-0.00031056	-1.4133	-0.00071834	508.274752574009	27.908	0.35546	28.587	28.401	28.757	0.67857					11	6	2	0	0	0	0.73563	1	9555	9555		36.044	0	1	1801700			29582	7999	21221	21387	28942	28942					0.028756485617122962
LEMPFSDSY	9	Unmodified	_LEMPFSDSY_					0	0	0			REV__nc|ENSG00000168610|P40763-3|STAT3	REV__nc|ENSG00000168610|P40763-3|STAT3	MSMS	A375_MHC_IP_R1	1	544.6883544921875	2	544.733883	1087.45321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.212	1	72.212	71.712	72.712	0								0	0	0	0.15486	1	26265	26265		7.9102	0	1		+		29583	20870	21222	21388	28943	28943					-0.08701595036245635
LEMTQNFYRAK	11	Unmodified	_LEMTQNFYRAK_					0	0	0		ATR|p.S1893F|1|0.45|ENSG00000175054|chr3:142497073-142497073|G/A|missense_variant	ATR|p.S1893F|1|0.45|ENSG00000175054|chr3:142497073-142497073|G/A|missense_variant	ATR|p.S1893F|1|0.45|ENSG00000175054|chr3:142497073-142497073|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	467.65789794921875	3	467.571216	1399.69182	-0.074796	-3.4972E-05	-0.56022	-0.00026194	-0.63501	-0.00029691	467.5709658581184	35.776	0.40905	35.776	35.573	35.982	0					12	7	2	0	0	0	0.99916	1	12007	12007		4.4062	2.1534	1	3323100			29584	214	21223	21389	28944	28944					0.007961852658581847
LEMTVERW	8	Unmodified	_LEMTVERW_					0	0	0			REV__ENSG00000141540|ENST00000269346|TTYH2	REV__ENSG00000141540|ENST00000269346|TTYH2	MULTI-SECPEP	A375_MHC_IP_R1	1	355.5978698730469	3	355.179548	1062.51682	-0.092749	-3.2943E-05	-0.15341	-5.4487E-05	-0.24616	-8.7429E-05	355.17945092140593	36.393	1.1679	36.393	35.727	36.895	0					34	22	2	0	0	0	0.972	1	12323	12323		1.6526	0	1	1539900	+		29585	19278	21224	21390	28945	28945					-0.011941898085069624
LEMYNKESRN	10	Unmodified	_LEMYNKESRN_					0	0	0			REV__ENST00000550317.1_1_12:111284592-111319020:+|nuORF	REV__ENST00000550317.1_1_12:111284592-111319020:+|nuORF	MSMS	A375_MHC_IP_R1	1	428.6054382324219	3	428.539805	1282.59759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.541	1	21.541	21.041	22.041	0								0	0	0	0.14555	1	5677	5677		17.863	8.0989	1		+		29586	21193	21225	21391	28946	28946					-0.03240953556246495
LENDIRTFF	9	Unmodified	_LENDIRTFF_					0	0	0		ENSG00000128708|ENST00000264108|HAT1;MRPS15-HAT1|1|fusion;HAT1|p.P53S|1|0.21|ENSG00000128708|chr2:171946752-171946752|C/T|missense_variant;HAT1|p.P53L|1|0.24|ENSG00000128708|chr2:171946753-171946753|C/T|missense_variant	ENSG00000128708|ENST00000264108|HAT1	ENSG00000128708|ENST00000264108|HAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	578.1959228515625	2	577.795663	1153.57677	-0.06772	-3.9129E-05	-1.0957	-0.00063307	-1.1634	-0.0006722	578.2956000847464	93.453	0.66333	93.453	93.023	93.686	0					18	12	2	0	0	0	0.29257	1	34346	34346		53.317	18.915	1	1797700			29587	4160	21226	21392	28947	28947					0.006128241263922973
LENDIRTFF	9	Unmodified	_LENDIRTFF_					0	0	0		ENSG00000128708|ENST00000264108|HAT1;MRPS15-HAT1|1|fusion;HAT1|p.P53S|1|0.21|ENSG00000128708|chr2:171946752-171946752|C/T|missense_variant;HAT1|p.P53L|1|0.24|ENSG00000128708|chr2:171946753-171946753|C/T|missense_variant	ENSG00000128708|ENST00000264108|HAT1	ENSG00000128708|ENST00000264108|HAT1	MULTI-SECPEP	A375_MHC_IP_R2	2	578.1953125	2	577.795663	1153.57677	-0.11497	-6.6427E-05	-1.2646	-0.0007307	-1.3796	-0.00079713	577.7959343567268	92.804	0.7077	93.543	93.089	93.797	0.73902					19	13	2	0	0	0	0.55534	1	35328	35328		26.021	7.8744	1	2303400			29588	4160	21226	21392	28948	28948					0.006128241263922973
LENDKQSTYPY	11	Unmodified	_LENDKQSTYPY_					0	0	0			REV__nc|ENSG00000108798|Q9P2A4-2|ABI3	REV__nc|ENSG00000108798|Q9P2A4-2|ABI3	MULTI-MSMS	A375_MHC_IP_R1	1	679.7147827148438	2	679.317157	1356.61976	-0.60466	-0.00041076	-3.597	-0.0024435	-4.2016	-0.0028542	679.3144171017797	53.53	0.40605	53.53	53.352	53.758	0					10	7	2	0	0	0	0.62292	1	19124	19124		21.537	1.1224	1	2443400	+		29589	17555	21227	21393	28949	28949					-0.044284506068379415
LENDKTIKL	9	Unmodified	_LENDKTIKL_					0	0	0		ENSG00000196981|ENST00000330689|WDR5B;ENSG00000196363|ENST00000358625|WDR5	ENSG00000196981|ENST00000330689|WDR5B	ENSG00000196981|ENST00000330689|WDR5B	MULTI-SECPEP	A375_MHC_IP_R2	2	537.713134765625	2	537.313689	1072.61282	-1.0903	-0.00058586	0.060774	3.2655E-05	-1.0296	-0.0005532	537.3136227486953	34.467	0.40728	35.219	35.057	35.464	0.75225					12	7	2	0	0	0	0.63749	1	12462	12462		27.629	2.6378	1	2326400			29590	9098	21228	21394	28950	28950					0.07942281303235177
LENDKTIKLW	10	Unmodified	_LENDKTIKLW_					0	0	0		ENSG00000196981|ENST00000330689|WDR5B;ENSG00000196363|ENST00000358625|WDR5	ENSG00000196981|ENST00000330689|WDR5B	ENSG00000196981|ENST00000330689|WDR5B	MULTI-MSMS	A375_MHC_IP_R1	1	420.970947265625	3	420.571322	1258.69214	0.18815	7.9132E-05	-0.2294	-9.6477E-05	-0.041243	-1.7345E-05	420.57115171036054	62.583	0.40941	62.583	62.403	62.813	0					10	7	2	0	0	0	0.38461	1	22644	22644		35.08	11.116	1	1568900			29591	9098	21229	21395	28951	28951					0.07313928257372027
LENFFGSEE	9	Unmodified	_LENFFGSEE_					0	0	0			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-SECPEP	A375_MHC_IP_R2	2	357.63580322265625	3	357.825828	1070.45566	-0.17449	-6.2438E-05	-0.23197	-8.3006E-05	-0.40647	-0.00014544	357.82662316347995	108.57	0.56018	109.31	109.06	109.62	0.74684					20	10	3	0	0	0	0.81166	1	40954	40954		0.23584	0	1	784290	+		29592	18434	21230	21396	28952	28952					-0.07675423306932316
LENHYNTY	8	Unmodified	_LENHYNTY_					0	0	0		ENSG00000140285|ENST00000267843|FGF7;ENST00000441829.2_9:44302237-44303615:+|nuORF	ENSG00000140285|ENST00000267843|FGF7	ENSG00000140285|ENST00000267843|FGF7	MULTI-MSMS	A375_MHC_IP_R2	2	528.132568359375	2	527.235439	1052.45632	-0.739	-0.00038963	-3.8688	-0.0020397	-4.6078	-0.0024294	527.733928513325	37.63	0.66512	38.405	38.074	38.739	0.77435					35	12	4	0	0	0	0.75805	1	13833	13833		18.135	1.1927	1	6908600			29593	5137	21231	21397	28953	28953					-0.06780583867225687
LENIFNNW	8	Unmodified	_LENIFNNW_					0	0	0			REV__tr|U7SVH9|U7SVH9_FUSNUKnr4/Smi1-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01234PE=4SV=1	REV__tr|U7SVH9|U7SVH9_FUSNUKnr4/Smi1-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01234PE=4SV=1	MSMS	A375_MHC_IP_R2	2	525.2086181640625	2	525.256174	1048.49779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.13	1	126.42	125.92	126.92	0.2951								0	0	0	0.16876	1	49320	49320		30.225	5.5509	1		+		29594	28593	21232	21398	28954	28954					-0.024514031078979315
LENIIVIGVSH	11	Unmodified	_LENIIVIGVSH_					0	0	0		tr|U7STV7|U7STV7_FUSNUGlutamyl-tRNAreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemAPE=3SV=1	tr|U7STV7|U7STV7_FUSNUGlutamyl-tRNAreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemAPE=3SV=1	tr|U7STV7|U7STV7_FUSNUGlutamyl-tRNAreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	1193.091552734375	1	1193.68885	1192.68157	0.18712	0.00022336	0.58207	0.00069481	0.76918	0.00091816	1193.6889349006512	122.99	0.20361	123.37	123.28	123.48	0.3766					5	3	2	0	0	0	0.99331	1	47231	47231		5.2969	0	1	8730200			29595	29716	21233	21399	28955	28955					0.09293945602939857
LENIQEKITEY	11	Unmodified	_LENIQEKITEY_					0	0	0		ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-SECPEP	A375_MHC_IP_R1	1	690.755859375	2	690.356282	1378.69801	-0.5826	-0.0004022	-0.097335	-6.7196E-05	-0.67994	-0.0004694	690.3560499443997	57.285	0.30627	57.285	57.109	57.415	0					13	5	3	0	0	0	0.88813	1	20556	20556		19.362	0.98885	1	3595200			29596	4324	21234	21400	28956	28956					0.023809819783764397
LENKIKEW	8	Unmodified	_LENKIKEW_					0	0	0		ENSG00000167916|ENST00000264651|KRT24;CON__Q2M2I5	ENSG00000167916|ENST00000264651|KRT24	ENSG00000167916|ENST00000264651|KRT24	MULTI-SECPEP	A375_MHC_IP_R1	1	354.2656555175781	3	353.865958	1058.57605	0.078874	2.7911E-05	-0.28298	-0.00010014	-0.20411	-7.2228E-05	353.86580012715615	47.707	0.35282	47.707	47.567	47.92	0					10	6	2	0	0	0	0.972	1	16825	16825		3.2813	2.088	1	1861800		+	29597	613	21235	21401	28957	28957					0.049100294773325004
LENLDLSKDCG	11	Unmodified	_LENLDLSKDCG_					0	0	0		ENSG00000164164|ENST00000447906|OTUD4;ENST00000237841.5_1_12:3950645-3951302:+|nuORF;nc|ENSG00000164164|Q01804-5|OTUD4;nc|ENSG00000164164|Q01804-3|OTUD4	ENSG00000164164|ENST00000447906|OTUD4	ENSG00000164164|ENST00000447906|OTUD4	MULTI-SECPEP	A375_MHC_IP_R1	1	402.61566162109375	3	402.860544	1205.5598	-0.20126	-8.1079E-05	2.4683	0.00099436	2.267	0.00091328	402.85996812676285	42.813	0.9635	42.813	42.233	43.197	0					55	18	4	0	0	0	0.99507	1	14990	14990		2.084	0.49169	1	2760000			29598	6793	21236	21402	28958	28958					-0.034754645417251595
LENLIFGSI	9	Unmodified	_LENLIFGSI_					0	0	0			REV__CAND1|p.S733F|1|0.41|ENSG00000111530|chr12:67305866-67305866|C/T|missense_variant	REV__CAND1|p.S733F|1|0.41|ENSG00000111530|chr12:67305866-67305866|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	503.16632080078125	2	503.2844	1004.55425	-0.5569	-0.00028028	1.4194	0.00071434	0.86245	0.00043406	503.28458972898693	66.319	0.86354	66.319	65.717	66.58	0					26	16	2	0	0	0	0.50702	1	23970	23970		25.399	8.457	1	3821600	+		29599	15570	21237	21403	28959	28959					0.052152247287722275
LENLNSSHVQ	10	Unmodified	_LENLNSSHVQ_					0	0	0		ENST00000400546.5_1_21:22652939-22656537:+|nuORF	ENST00000400546.5_1_21:22652939-22656537:+|nuORF	ENST00000400546.5_1_21:22652939-22656537:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	380.2679748535156	3	380.859643	1139.5571	-0.31042	-0.00011823	0.92431	0.00035203	0.61389	0.00023381	380.85991868559177	24.338	0.25396	24.981	24.755	25.009	0.64368					9	4	3	0	0	0	0.91909	1	7980	7980		3.0723	0	1	6711400			29600	11555	21238	21404	28960	28960					-0.007095518843698301
LENNENKF	8	Unmodified	_LENNENKF_					0	0	0			REV__IL1R1|p.M145I|1|0.11|ENSG00000115594|chr2:102165253-102165253|G/A|missense_variant	REV__IL1R1|p.M145I|1|0.11|ENSG00000115594|chr2:102165253-102165253|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	503.7061767578125	2	504.243264	1006.47197	-0.63779	-0.0003216	-0.27072	-0.00013651	-0.9085	-0.00045811	504.74305226218905	108.85	0.8158	109.6	108.86	109.67	0.74684					19	15	2	0	0	0	0.77515	1	41022	41022		12.532	0.89125	1	1364400	+		29601	17896	21239	21405	28961	28961					-0.031002973501813358
LENNHPKVDI	10	Unmodified	_LENNHPKVDI_					0	0	0		nc|ENSG00000130783|Q6P9F0-3|CCDC62;nc|ENSG00000130783|Q6P9F0-2|CCDC62;ENSG00000130783|ENST00000253079|CCDC62	nc|ENSG00000130783|Q6P9F0-3|CCDC62	nc|ENSG00000130783|Q6P9F0-3|CCDC62	MULTI-SECPEP	A375_MHC_IP_R1	1	393.3011779785156	3	393.543655	1177.60914	0.29541	0.00011626	0.25751	0.00010134	0.55292	0.0002176	393.54371985592167	42.917	0.45675	42.917	42.638	43.095	0					14	8	2	0	0	0	0.8125	1	14917	14917		11.518	11.518	1	1847100			29602	4283	21240	21406	28962	28962					0.027436115293767216
LENNTYKHFIY	11	Unmodified	_LENNTYKHFIY_					0	0	0		tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1	tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1	tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	481.64129638671875	3	481.241865	1440.70376	-0.68678	-0.00033051	-0.53618	-0.00025803	-1.223	-0.00058854	481.2416396451836	40.563	0.45766	41.337	41.082	41.54	0.77451					20	8	3	0	0	0	0.72909	1	15048	15048		9.7643	1.4778	1	3445800			29603	29631	21241	21407	28963	28963					0.0010412528069991822
LENPKYIS	8	Unmodified	_LENPKYIS_					0	0	0		ENST00000262741.9_2_1:46597685-46597748:-|nuORF	ENST00000262741.9_2_1:46597685-46597748:-|nuORF	ENST00000262741.9_2_1:46597685-46597748:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	963.1366577148438	1	963.514573	962.507297	0.53128	0.0005119	-0.68781	-0.00066272	-0.15653	-0.00015082	963.5138775513421	127.14	0.6068	127.14	126.76	127.37	0					13	11	2	0	0	0	0.972	1	48501	48501		3.9444	0	1	46879000			29604	10313	21242	21408	28964	28964					0.02454365177618456
LENRHLTFW	9	Unmodified	_LENRHLTFW_					0	0	0			REV__ENST00000507994.1_1_4:100761564-100785013:+|nuORF	REV__ENST00000507994.1_1_4:100761564-100785013:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	405.6146545410156	3	405.88049	1214.61964	-0.21412	-8.6908E-05	-0.27616	-0.00011209	-0.49028	-0.000199	405.8801897984999	43.346	0.30508	43.346	43.197	43.502	0					7	5	2	0	0	0	0.73008	1	15037	15037		8.4443	4.8572	1	1813300	+		29605	16569	21243	21409	28965	28965					0.02091638974457055
LENYLRKEL	9	Unmodified	_LENYLRKEL_					0	0	0		nc|ENSG00000102904|Q2TAA8|TSNAXIP1;ENSG00000102904|ENST00000561639|TSNAXIP1	nc|ENSG00000102904|Q2TAA8|TSNAXIP1	nc|ENSG00000102904|Q2TAA8|TSNAXIP1	MULTI-SECPEP	A375_MHC_IP_R2	2	393.623779296875	3	393.224034	1176.65027	-0.61201	-0.00024066	0.41147	0.0001618	-0.20054	-7.8857E-05	393.22416543544745	25.107	0.45918	25.751	25.619	26.078	0.64368					13	8	3	0	0	0	0.73926	1	8380	8380		12.873	5.8355	1	4635500			29606	2400	21244	21410	28966	28966					0.06901372568859188
LENYVSDGY	9	Unmodified	_LENYVSDGY_					0	0	0		nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000576225.5_1_17:79058928-79084738:+|nuORF	nc|ENSG00000175866|Q9UQB8-3|BAIAP2	nc|ENSG00000175866|Q9UQB8-3|BAIAP2	MULTI-MSMS	A375_MHC_IP_R1	1	532.1981201171875	2	530.235104	1058.45566	-0.63859	-0.0003386	0.087793	4.6551E-05	-0.55079	-0.00029205	530.2351458275778	83.605	1.4215	83.605	83.175	84.596	0					84	27	5	0	0	0	0.68216	1	30625	30625		8.5933	0	1	74927000			29607	7985	21245	21411	28967	28967					-0.07123423306939003
LEPAEPGQAW	10	Unmodified	_LEPAEPGQAW_					0	0	0		ENST00000534432.1_1_11:65367152-65374162:-|nuORF;nc|ENSG00000173327|Q16584-2|MAP3K11;ENSG00000173327|ENST00000309100|MAP3K11	ENST00000534432.1_1_11:65367152-65374162:-|nuORF	ENST00000534432.1_1_11:65367152-65374162:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	548.67529296875	2	549.266739	1096.51892	-0.53706	-0.00029499	-0.6428	-0.00035307	-1.1799	-0.00064806	549.2663076935232	75.117	0.50505	75.117	74.908	75.413	0					12	9	2	0	0	0	0.87163	1	27399	27399		19.257	11.347	1	1214400			29608	7788	21246	21412	28968	28968					-0.025474377990576613
LEPAFSRTV	9	Unmodified	_LEPAFSRTV_					0	0	0		ENSG00000013523|ENST00000251089|ANGEL1	ENSG00000013523|ENST00000251089|ANGEL1	ENSG00000013523|ENST00000251089|ANGEL1	MULTI-SECPEP	A375_MHC_IP_R2	2	510.1997985839844	2	510.279649	1018.54475	-0.92738	-0.00047322	0.52997	0.00027043	-0.39742	-0.00020279	510.28003543191306	40.74	0.509	41.515	41.183	41.692	0.77451					14	9	2	0	0	0	0.39388	1	15056	15056		13.906	0	1	4764300			29609	1024	21247	21413	28969	28969					0.036214564432498264
LEPAWHLED	9	Unmodified	_LEPAWHLED_					0	0	0			REV__ENST00000462189.1_1_2:74688404-74690534:-|nuORF	REV__ENST00000462189.1_1_2:74688404-74690534:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	554.7059326171875	2	555.266739	1108.51892	-0.42412	-0.0002355	-0.46409	-0.00025769	-0.88821	-0.00049319	555.2668268569197	70.344	0.41122	70.344	70.185	70.597	0					11	7	2	0	0	0	0.55359	1	25492	25492		28.487	0	1	776310	+		29610	17870	21248	21414	28970	28970					-0.030994377990509747
LEPCAYAPTY	10	Unmodified	_LEPCAYAPTY_					0	0	0		ENSG00000182272|ENST00000329962|B4GALNT4;B4GALNT4|p.R456Gfs*39|1|0.33|ENSG00000182272|chr11:376486-376486|C/-|frameshift_variant	ENSG00000182272|ENST00000329962|B4GALNT4	ENSG00000182272|ENST00000329962|B4GALNT4	MSMS	A375_MHC_IP_R2	2	564.2105712890625	2	564.257525	1126.5005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.928	1	99.688	99.188	100.19	0.75977								0	0	0	0.15332	1	37527	37527		10.074	0.72649	1				29611	8397	21249	21415	28971	28971					-0.05769315765269312
LEPEELYQTF	10	Unmodified	_LEPEELYQTF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.R415Efs*11|1|0.09|ENSG00000167658|chr19:3980617-3980617|G/-|frameshift_variant;EEF2|p.V416Lfs*18|1|0.09|ENSG00000167658|chr19:3980618-3980619|-/AGCAATCCGCCTGCCTCAGCCTC|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	A375_MHC_IP_R1	1	635.2060546875	2	634.805894	1267.59723	-0.18866	-0.00011977	0.11402	7.2381E-05	-0.074644	-4.7384E-05	634.8056788029227	113.53	0.60979	113.53	113.19	113.8	0					31	11	4	0	0	0	0.0012231	2	41578	41561;41578		145.13	91.297	1	9293900			29612	7207	21250	21416	28972;28973	28973					-0.02586050004470053
LEPEELYQTF	10	Unmodified	_LEPEELYQTF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.R415Efs*11|1|0.09|ENSG00000167658|chr19:3980617-3980617|G/-|frameshift_variant;EEF2|p.V416Lfs*18|1|0.09|ENSG00000167658|chr19:3980618-3980619|-/AGCAATCCGCCTGCCTCAGCCTC|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	A375_MHC_IP_R2	2	635.20654296875	2	634.805894	1267.59723	-0.56947	-0.0003615	0.37915	0.00024069	-0.19031	-0.00012081	634.8059870376258	112.86	0.76702	113.59	113.22	113.99	0.72458					34	14	3	0	0	0	0.0012231	1	42495	42495		145.13	91.297	1	10720000			29613	7207	21250	21416	28974	28974					-0.02586050004470053
LEPHGWPCIV	10	Unmodified	_LEPHGWPCIV_					0	0	0			REV__TRPM6|p.S141Cfs*13|1|0.33|ENSG00000119121|chr9:74840145-74840146|TG/-|frameshift_variant	REV__TRPM6|p.S141Cfs*13|1|0.33|ENSG00000119121|chr9:74840145-74840146|TG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	576.1754150390625	2	575.789327	1149.5641	-0.17512	-0.00010083	-0.94204	-0.00054242	-1.1172	-0.00064325	575.7894357741264	74.013	1.2217	74.75	73.787	75.009	0.73752					26	23	2	0	0	0	0.91556	1	27884	27884		10.074	0	1	1454900	+		29614	28915	21251	21417	28975	28975					-0.0046991053750389256
LEPIDPEVIF	10	Unmodified	_LEPIDPEVIF_					0	0	0			REV__ENSG00000203867|ENST00000369519|RBM20	REV__ENSG00000203867|ENST00000369519|RBM20	MULTI-SECPEP	A375_MHC_IP_R1	1	586.6985473632812	2	586.315897	1170.61724	-0.062594	-3.67E-05	-0.52655	-0.00030872	-0.58914	-0.00034542	586.3152251043994	106.82	0.30594	106.82	106.62	106.93	0					10	5	2	0	0	0	0.9269	1	39204	39204		6.7232	3.1267	1	790390	+		29615	22473	21252	21418	28976	28976					0.038757457261453965
LEPKNKIVW	9	Unmodified	_LEPKNKIVW_					0	0	0			REV__nc|ENSG00000080298|P48380-2|RFX3	REV__nc|ENSG00000080298|P48380-2|RFX3	MULTI-SECPEP	A375_MHC_IP_R1	1	563.1638793945312	2	563.834591	1125.65463	-0.69563	-0.00039222	-2.3011	-0.0012975	-2.9968	-0.0016897	564.3338730690589	67.042	0.51025	67.042	66.684	67.194	0					15	9	3	0	0	0	0.71541	1	24267	24267		11.64	1.5664	1	1163800	+		29616	27122	21253	21419	28977	28977					0.0968288178239618
LEPMIVPDLD	10	Unmodified	_LEPMIVPDLD_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-SECPEP	A375_MHC_IP_R2	2	381.91448974609375	3	381.198497	1140.57366	-0.3594	-0.000137	1.2267	0.0004676	0.86726	0.0003306	381.19897732294567	21.121	0.20256	21.74	21.625	21.828	0.61932					5	3	2	0	0	0	0.92957	1	6639	6639		3.3196	3.3196	1	863120			29617	2747	21254	21420	28978	28978					0.008998129573456026
LEPNKQKVF	9	Unmodified	_LEPNKQKVF_					0	0	0			REV__nc|ENSG00000187243|Q96JG8-4|MAGED4	REV__nc|ENSG00000187243|Q96JG8-4|MAGED4	MULTI-SECPEP	A375_MHC_IP_R2	2	367.957275390625	3	368.213358	1101.61824	0.03561	1.3112E-05	0.0010064	3.7056E-07	0.036617	1.3483E-05	368.21319774993333	49.042	0.2545	49.8	49.639	49.894	0.75736					7	4	2	0	0	0	0.80101	1	18358	18358		2.7352	2.7352	1	636680	+		29618	27426	21255	21421	28979	28979					0.07150004885693306
LEPPEELKSFG	11	Unmodified	_LEPPEELKSFG_					0	0	0			REV__nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	REV__nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	MULTI-SECPEP	A375_MHC_IP_R1	1	622.7465209960938	2	623.321711	1244.62887	-0.71857	-0.0004479	1.6468	0.0010265	0.92827	0.00057861	623.3225152420298	131.17	0.2019	131.17	131.07	131.28	0					5	3	2	0	0	0	0.99424	1	50613	50613		8.1555	1.4324	1	889310	+		29619	20837	21256	21422	28980	28980					0.016339427494585834
LEPPEWSI	8	Unmodified	_LEPPEWSI_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R1	1	485.1384582519531	2	485.74765	969.480748	-0.27952	-0.00013578	-0.85513	-0.00041538	-1.1347	-0.00055115	485.74624956694163	91.617	0.75976	91.617	91.299	92.059	0					44	14	4	0	0	0	0.90224	1	33823	33823		26.341	0	1	10110000	+		29620	19932	21257	21423	28981	28981					-0.00521323713712718
LEPRRRKFHK	10	Unmodified	_LEPRRRKFHK_					0	0	0		ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant;ANK2|p.D3531Ffs*6|1|0.05|ENSG00000145362|chr4:113359207-113359208|-/ATTCTAT|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2	ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant	ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant	MSMS	A375_MHC_IP_R1	1	683.8448486328125	2	683.912562	1365.81057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.46	1	124.46	123.96	124.96	0								0	0	0	0.15435	1	46874	46874		6.7232	0	1				29621	132	21258	21424	28982	28982					0.14229765076402145
LEPRSQEQP	9	Unmodified	_LEPRSQEQP_					0	0	0		ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	MULTI-SECPEP	A375_MHC_IP_R2	2	361.9607238769531	3	361.852489	1082.53564	-0.19596	-7.0909E-05	-1.3	-0.00047042	-1.496	-0.00054133	361.8519441958206	27.881	0.40484	28.559	28.301	28.706	0.67857					9	7	2	0	0	0	0.75164	1	9482	9482		9.544	6.7007	1	1502300			29622	4414	21259	21425	28983	28983					-0.0023293691308481357
LEPRTACFERF	11	Unmodified	_LEPRTACFERF_					0	0	0			REV__nc|ENSG00000198055|P43250-2|GRK6	REV__nc|ENSG00000198055|P43250-2|GRK6	MULTI-SECPEP	A375_MHC_IP_R1	1	457.1793212890625	3	456.895812	1367.66561	-0.078809	-3.6008E-05	0.42275	0.00019315	0.34394	0.00015714	456.8961635556186	49.949	0.45974	49.949	49.642	50.101	0					13	8	2	0	0	0	0.99738	1	17564	17564		2.4348	2.4348	1	1266400	+		29623	27445	21260	21426	28984	28984					-0.0035208390561365377
LEPSPRDGRWG	11	Unmodified	_LEPSPRDGRWG_					0	0	0			REV__ENST00000231061.8_1_5:151066530-151066617:-|nuORF	REV__ENST00000231061.8_1_5:151066530-151066617:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	423.9278564453125	3	423.882671	1268.62618	-0.66145	-0.00028038	-1.1767	-0.00049878	-1.8382	-0.00077916	423.8821201044437	33.608	0.65828	34.36	34.095	34.753	0.75225					22	12	3	0	0	0	0.98459	1	12023	12023		7.0341	2.9175	1	4146700	+		29624	23068	21261	21427	28985	28985					0.002615321351640887
LEPTVTTYR	9	Unmodified	_LEPTVTTYR_					0	0	0			REV__TMEM135|p.P444L|1|0.2|ENSG00000166575|chr11:87321287-87321287|C/T|missense_variant	REV__TMEM135|p.P444L|1|0.2|ENSG00000166575|chr11:87321287-87321287|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	540.7025756835938	2	540.290214	1078.56587	-0.82322	-0.00044478	-0.86608	-0.00046794	-1.6893	-0.00091271	540.790937729061	73.716	0.66233	74.451	74.294	74.956	0.73541					14	12	2	0	0	0	0.67483	1	27944	27944		20.454	2.3073	1	559540	+		29625	20686	21262	21428	28986	28986					0.029734217520854145
LEPWKLKRVW	10	Unmodified	_LEPWKLKRVW_					0	0	0			REV__ENSG00000121064|ENST00000262288|SCPEP1	REV__ENSG00000121064|ENST00000262288|SCPEP1	MSMS	A375_MHC_IP_R1	1	678.1154174804688	2	677.90334	1353.79213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.294	1	94.294	93.794	94.794	0								0	0	0	0.1552	1	34659	34659		3.9444	0.66309	1		+		29626	18145	21263	21429	28987	28987					0.1293821038182159
LEPYKKKNPSG	11	Unmodified	_LEPYKKKNPSG_					0	0	0		ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	MSMS	A375_MHC_IP_R1	1	630.7273559570312	2	630.85097	1259.68739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.65	1	101.65	101.15	102.15	0								0	0	0	0.16152	1	37357	37357		10.8	3.1906	1				29627	6289	21264	21430	28988	28988					0.06793044114601798
LEPYYLAPY	9	Unmodified	_LEPYYLAPY_					0	0	0			REV__nc|ENSG00000158402|P30307-4|CDC25C	REV__nc|ENSG00000158402|P30307-4|CDC25C	MULTI-SECPEP	A375_MHC_IP_R2	2	564.3253784179688	2	564.784233	1127.55391	-0.47277	-0.00026702	-3.5139	-0.0019846	-3.9866	-0.0022516	565.2832260324095	105.77	0.56229	106.53	106.37	106.94	0.75977					14	10	2	0	0	0	0.69504	1	39967	39967		7.9102	0	1	1221500	+		29628	20070	21265	21431	28989	28989					-0.0047619499109714525
LEQAIKQFI	9	Unmodified	_LEQAIKQFI_					0	0	0			REV__IGSF6|p.E205K|1|0.21|ENSG00000140749|chr16:21643127-21643127|C/T|missense_variant	REV__IGSF6|p.E205K|1|0.21|ENSG00000140749|chr16:21643127-21643127|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	364.6107177734375	3	363.881608	1088.623	0.75588	0.00027505	0.93917	0.00034175	1.695	0.0006168	363.8818058919186	44.77	0.50729	44.77	44.523	45.03	0					11	9	2	0	0	0	0.62767	1	15568	15568		16.149	8.5402	1	1171600	+		29629	26784	21266	21432	28990	28990					0.08222889028479585
LEQAIKQFI	9	Unmodified	_LEQAIKQFI_					0	0	0			REV__IGSF6|p.E205K|1|0.21|ENSG00000140749|chr16:21643127-21643127|C/T|missense_variant	REV__IGSF6|p.E205K|1|0.21|ENSG00000140749|chr16:21643127-21643127|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	364.6107177734375	3	363.881608	1088.623	0.11809	4.297E-05	0.73642	0.00026797	0.8545	0.00031094	363.8817940888481	43.526	0.35335	44.298	44.13	44.483	0.7724					10	6	2	0	0	0	0.76187	1	16166	16166		7.609	3.0801	1	965920	+		29630	26784	21266	21432	28991	28991					0.08222889028479585
LEQAVVAPS	9	Unmodified	_LEQAVVAPS_					0	0	0			REV__nc|ENSG00000185019|O94941-2|UBOX5	REV__nc|ENSG00000185019|O94941-2|UBOX5	MULTI-SECPEP	A375_MHC_IP_R2	2	457.65283203125	2	457.2531	912.491647	-0.47126	-0.00021549	0.042495	1.9431E-05	-0.42877	-0.00019605	457.25317611523406	62.171	0.70977	62.914	62.521	63.23	0.74263					19	13	2	0	0	0	0.20451	1	23570	23570		34.932	0.53034	1	1833000	+		29631	21860	21267	21433	28992	28992					0.031900786605774556
LEQDDESW	8	Unmodified	_LEQDDESW_					0	0	0			REV__nc|ENSG00000166946|O95273-2|CCNDBP1	REV__nc|ENSG00000166946|O95273-2|CCNDBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	511.9885559082031	2	511.209086	1020.40362	-0.95831	-0.0004899	0.087208	4.4582E-05	-0.8711	-0.00044531	511.2090872324537	40.803	0.30496	41.578	41.438	41.743	0.77451					6	5	2	0	0	0	0.972	1	15119	15119		5.2307	0	1	727470	+		29632	20720	21268	21434	28993	28993					-0.10576586720708292
LEQDRENF	8	Unmodified	_LEQDRENF_					0	0	0			REV__nc|ENSG00000178234|Q8NCW6-2|GALNT11	REV__nc|ENSG00000178234|Q8NCW6-2|GALNT11	MULTI-MSMS	A375_MHC_IP_R1	1	525.6920166015625	2	525.74617	1049.47779	0.0073636	3.8714E-06	-0.9845	-0.0005176	-0.97714	-0.00051373	525.7456723142521	49.26	0.55699	49.26	48.983	49.54	0					13	10	2	0	0	0	0.76248	1	17406	17406		16.942	0	1	2031000	+		29633	21498	21269	21435	28994	28994					-0.04497198838521399
LEQEGMWAEA	10	Unmodified	_LEQEGMWAEA_					0	0	0			REV__nc|ENSG00000173898|O15020-2|SPTBN2	REV__nc|ENSG00000173898|O15020-2|SPTBN2	MSMS	A375_MHC_IP_R2	2	582.1739501953125	2	582.255514	1162.49647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.556	1	50.313	49.813	50.813	0.75737								0	0	0	0.14483	1	18622	18622		27.629	2.2295	1		+		29634	21253	21270	21436	28995	28995					-0.07827405258967701
LEQEQCFY	8	Unmodified	_LEQEQCFY_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MSMS	A375_MHC_IP_R1	1	530.196044921875	2	530.226225	1058.4379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.884	1	78.884	78.384	79.384	0								0	0	0	0.16876	1	28792	28792		11.64	0.81637	1				29635	1349	21271	21437	28996	28996					-0.0889846183345071
LEQGREDCI	9	Unmodified	_LEQGREDCI_					0	0	0			REV__nc|ENSG00000131473|P53396-3|ACLY	REV__nc|ENSG00000131473|P53396-3|ACLY	MULTI-MSMS	A375_MHC_IP_R2	2	532.2002563476562	2	531.747856	1061.48116	-0.60508	-0.00032175	1.8379	0.0009773	1.2328	0.00065555	531.7496392749116	67.901	0.96759	68.636	68	68.968	0.73511					32	18	3	0	0	0	0.58047	1	25791	25791		15.847	1.2655	1	1652000	+		29636	27226	21272	21438	28997	28997					-0.04712272056190159
LEQHKKKII	9	Unmodified	_LEQHKKKII_					0	0	0			REV__CON__Q99PS0	REV__CON__Q99PS0	MSMS	A375_MHC_IP_R2	2	568.6399536132812	2	568.861141	1135.70773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.09	1	107.84	107.34	108.34	0.75436								0	0	0	0.15486	1	40462	40462		4.756	0	1		+	+	29637	15898	21273	21439	28998	28998					0.1453025956509464
LEQHQSLQY	9	Unmodified	_LEQHQSLQY_					0	0	0			REV__ENSG00000280670|ENST00000629482|CCDC163	REV__ENSG00000280670|ENST00000629482|CCDC163	MULTI-SECPEP	A375_MHC_IP_R1	1	574.0194091796875	2	573.28292	1144.55129	-0.31759	-0.00018207	0.88297	0.00050619	0.56539	0.00032413	573.283505786956	89.966	0.70823	89.966	89.476	90.184	0					22	13	3	0	0	0	0.73363	1	33091	33091		10.824	0	1	1135700	+		29638	22990	21274	21440	28999	28999					-0.015206503960143891
LEQIADCCM	9	Unmodified	_LEQIADCCM_					0	0	0		nc|ENSG00000187535|Q96RY7-2|IFT140;ENSG00000187535|ENST00000426508|IFT140;ENST00000565298.5_1_16:1560947-1574065:-|nuORF	nc|ENSG00000187535|Q96RY7-2|IFT140	nc|ENSG00000187535|Q96RY7-2|IFT140	MULTI-MSMS	A375_MHC_IP_R1	1	513.205078125	2	513.208663	1024.40277	-0.49349	-0.00025326	0.92858	0.00047656	0.43509	0.00022329	513.2095038606753	74.171	0.45604	74.171	73.893	74.349	0					12	8	2	0	0	0	0.65721	1	27079	27079		10.824	0	1	649030			29639	8832	21275	21441	29000	29000					-0.10845163957264958
LEQIEQKL	8	Unmodified	_LEQIEQKL_					0	0	0		ENST00000430918.5_3_2:242207941-242242069:-|nuORF	ENST00000430918.5_3_2:242207941-242242069:-|nuORF	ENST00000430918.5_3_2:242207941-242242069:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	501.15887451171875	2	500.787307	999.560061	-0.3814	-0.000191	-0.52888	-0.00026486	-0.91028	-0.00045586	500.78720837992233	60.438	0.40563	60.438	60.109	60.514	0					10	7	2	0	0	0	0.86263	1	21659	21659		26.884	0	1	967060			29640	11862	21276	21442	29001	29001					0.060263232404167866
LEQIKEPCN	9	Unmodified	_LEQIKEPCN_					0	0	0		ENST00000502981.2_1_4:53382-60051:+|nuORF;ENSG00000272602|ENST00000610261|ZNF595	ENST00000502981.2_1_4:53382-60051:+|nuORF	ENST00000502981.2_1_4:53382-60051:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	537.0978393554688	2	537.268424	1072.5223	-0.69315	-0.00037241	2.3468	0.0012609	1.6536	0.00088845	537.2694504645332	55.304	0.91597	55.304	54.771	55.687	0					35	17	3	0	0	0	0.16676	1	19595	19595		58.679	20.705	1	2822100			29641	9992	21277	21443	29002	29002					-0.011065110166782688
LEQIKEPCN	9	Unmodified	_LEQIKEPCN_					0	0	0		ENST00000502981.2_1_4:53382-60051:+|nuORF;ENSG00000272602|ENST00000610261|ZNF595	ENST00000502981.2_1_4:53382-60051:+|nuORF	ENST00000502981.2_1_4:53382-60051:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	537.097412109375	2	537.268424	1072.5223	-1.066	-0.00057272	2.8016	0.0015052	1.7356	0.00093249	537.2696081450366	54.594	0.86307	55.345	54.916	55.779	0.75075					28	16	2	0	0	0	0.24324	1	20447	20447		53.833	9.9745	1	2433300			29642	9992	21277	21443	29003	29003					-0.011065110166782688
LEQKGQEYI	9	Unmodified	_LEQKGQEYI_					0	0	0		ENSG00000101966|ENST00000371199|XIAP;ENST00000603162.1_1_10:111440295-111440448:+|nuORF;ENST00000497906.5_1_X:122993701-123026581:+|nuORF	ENSG00000101966|ENST00000371199|XIAP	ENSG00000101966|ENST00000371199|XIAP	MULTI-SECPEP	A375_MHC_IP_R2	2	554.6868286132812	2	554.287671	1106.56079	-0.89423	-0.00049566	0.1891	0.00010482	-0.70513	-0.00039084	554.2877163873944	66.427	1.0693	67.163	66.932	68.001	0.73631					28	20	2	0	0	0	0.58271	1	25191	25191		14.838	3.3436	1	2634800			29643	2339	21278	21444	29004	29004					0.011771178894832701
LEQKLSDYE	9	Unmodified	_LEQKLSDYE_					0	0	0			REV__nc|ENSG00000151746|Q96G01-4|BICD1	REV__nc|ENSG00000151746|Q96G01-4|BICD1	MULTI-SECPEP	A375_MHC_IP_R1	1	374.9449157714844	3	375.520516	1123.53972	0.5267	0.00019779	-1.3205	-0.00049588	-0.79381	-0.00029809	375.52016717802667	39.213	0.50858	39.213	38.933	39.441	0					12	9	2	0	0	0	0.71071	1	13449	13449		19.362	0	1	1721600	+		29644	19770	21279	21445	29005	29005					-0.017108922100533164
LEQLERKR	8	Unmodified	_LEQLERKR_					0	0	0		nc|ENSG00000248333|P21127|CDK11B;nc|ENSG00000248333|P21127-9|CDK11B;nc|ENSG00000008128|Q9UQ88|CDK11A;ENSG00000248333|ENST00000341832|CDK11B;nc|ENSG00000248333|P21127-3|CDK11B;ENSG00000008128|ENST00000404249|CDK11A;nc|ENSG00000008128|Q9UQ88-3|CDK11A;nc|ENSG00000248333|P21127-8|CDK11B;nc|ENSG00000008128|Q9UQ88-4|CDK11A;nc|ENSG00000248333|P21127-6|CDK11B;nc|ENSG00000008128|Q9UQ88-9|CDK11A;ENST00000598846.1_1_1:1636463-1654047:-|nuORF	nc|ENSG00000248333|P21127|CDK11B	nc|ENSG00000248333|P21127|CDK11B	MULTI-SECPEP	A375_MHC_IP_R1	1	357.6411437988281	3	357.88049	1070.61964	0.026046	9.3214E-06	-0.18768	-6.7169E-05	-0.16164	-5.7847E-05	357.8803904201163	34.167	0.35237	34.167	34.001	34.353	0					10	6	2	0	0	0	0.972	1	11236	11236		10.074	0	1	1978700			29645	953	21280	21446	29006	29006					0.08715638974467765
LEQLGRVG	8	Unmodified	_LEQLGRVG_					0	0	0			REV__ENST00000361722.7_1_17:45788235-45788682:+|nuORF	REV__ENST00000361722.7_1_17:45788235-45788682:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	436.6064758300781	2	436.253434	870.492316	-0.44167	-0.00019268	0.33285	0.00014521	-0.10881	-4.7471E-05	436.25332309016164	37.803	0.30553	38.577	38.382	38.687	0.77451					6	5	2	0	0	0	0.972	1	13819	13819		9.3474	0	1	1110200	+		29646	23921	21281	21447	29007	29007					0.05188918100293449
LEQLISINN	9	Unmodified	_LEQLISINN_					0	0	0			REV__nc|ENSG00000091490|Q68CR1-3|SEL1L3	REV__nc|ENSG00000091490|Q68CR1-3|SEL1L3	MSMS	A375_MHC_IP_R1	1	522.2162475585938	2	522.290214	1042.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.417	1	50.417	49.917	50.917	0								0	0	0	0.15142	1	17861	17861		19.257	1.1106	1		+		29647	16950	21282	21448	29008	29008					0.04629421752088092
LEQLSSTSRI	10	Unmodified	_LEQLSSTSRI_					0	0	0			REV__ENST00000390664.2_1_16:75529050-75529263:-|nuORF	REV__ENST00000390664.2_1_16:75529050-75529263:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	377.93304443359375	3	378.543544	1132.6088	0.046006	1.7415E-05	-1.6573	-0.00062734	-1.6112	-0.00060993	378.87629627920285	23.634	0.30479	23.634	23.483	23.787	0					7	5	2	0	0	0	0.72086	1	6590	6590		15.739	8.2616	1	1428300	+		29648	24261	21283	21449	29009	29009					0.04780191809527423
LEQMTKQL	8	Unmodified	_LEQMTKQL_					0	0	0			REV__ENSG00000135968|ENST00000309863|GCC2	REV__ENSG00000135968|ENST00000309863|GCC2	MULTI-MSMS	A375_MHC_IP_R1	1	495.66632080078125	2	495.76806	989.521567	-0.81648	-0.00040478	-0.088556	-4.3903E-05	-0.90503	-0.00044869	495.76831950493886	29.53	0.30416	29.53	29.302	29.607	0					8	5	2	0	0	0	0.70206	1	9296	9296		34.102	1.797	1	6032400	+		29649	18905	21284	21450	29010	29010					0.02638694334268621
LEQNQQQL	8	Unmodified	_LEQNQQQL_					0	0	0			REV__nc|ENSG00000103995|O94986-1|CEP152	REV__nc|ENSG00000103995|O94986-1|CEP152	MULTI-SECPEP	A375_MHC_IP_R1	1	1001.1546020507812	1	1000.5058	999.498523	0.50183	0.00050209	-1.1486	-0.0011491	-0.64672	-0.00064705	1000.5047358086797	127.75	0.30438	127.75	127.52	127.82	0					6	5	2	0	0	0	0.8824	1	48901	48901		23.148	0	1	11034000	+		29650	17296	21285	21451	29011	29011					-0.001246084588501617
LEQPDSCLPY	10	Unmodified	_LEQPDSCLPY_					0	0	0		ENSG00000219481|ENST00000430580|NBPF1;nc|ENSG00000219481|Q3BBV0|NBPF1	ENSG00000219481|ENST00000430580|NBPF1	ENSG00000219481|ENST00000430580|NBPF1	MSMS	A375_MHC_IP_R1	1	582.6666259765625	2	582.765714	1163.51688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.112	1	75.112	74.612	75.612	0								0	0	0	0.15283	1	27363	27363		11.64	0.14559	1				29651	9660	21286	21452	29012	29012					-0.058342345991604816
LEQPDSCQPY	10	Unmodified	_LEQPDSCQPY_					0	0	0		nc|ENSG00000162825|P0DPF2|NBPF20;ENSG00000162825|ENST00000698833|NBPF20;ENSG00000266338|ENST00000581897|NBPF15;nc|ENSG00000270231|Q3BBV2|NBPF8;nc|ENSG00000273136|B4DH59|NBPF26;nc|ENSG00000270629|Q5TI25|NBPF14;ENSG00000273136|ENST00000620612|NBPF26;ENSG00000268043|ENST00000698835|NBPF12;ENST00000491285.1_1:146215077-146250826:-|nuORF;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000271383|ENST00000651566|NBPF19;nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000269713|ENST00000698832|NBPF9	nc|ENSG00000162825|P0DPF2|NBPF20;nc|ENSG00000269713|P0DPF3-2|NBPF9	nc|ENSG00000269713|P0DPF3-2|NBPF9	MULTI-MSMS	A375_MHC_IP_R2	2	590.6536865234375	2	590.252971	1178.49139	-0.36426	-0.00021501	1.1531	0.00068059	0.78879	0.00046559	590.2535638359062	94.199	0.60701	94.944	94.667	95.274	0.74474					20	11	2	0	0	0	0.70496	1	35833	35833		10.074	0	1	1813600			29652	6601;9981	21287	21453	29013	29013					-0.0907170912159927
LEQPQGHWII	10	Unmodified	_LEQPQGHWII_					0	0	0		nc|ENSG00000177842|Q6ZNG0-2|ZNF620;ENSG00000177842|ENST00000314529|ZNF620	nc|ENSG00000177842|Q6ZNG0-2|ZNF620	nc|ENSG00000177842|Q6ZNG0-2|ZNF620	MULTI-SECPEP	A375_MHC_IP_R2	2	407.97265625	3	407.552262	1219.63496	0.11421	4.6546E-05	-0.61967	-0.00025255	-0.50546	-0.000206	407.552135181119	69.188	0.50729	69.923	69.626	70.133	0.73511					13	9	2	0	0	0	0.92603	1	26254	26254		5.7834	0	1	997590			29653	8112	21288	21454	29014	29014					0.033925057716714946
LEQQEEESQRQ	11	Unmodified	_LEQQEEESQRQ_					0	0	0			REV__ENSG00000083168|ENST00000265713|KAT6A	REV__ENSG00000083168|ENST00000265713|KAT6A	MSMS	A375_MHC_IP_R1	1	468.4660949707031	3	468.551427	1402.63245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.647	1	25.647	25.147	26.147	0								0	0	0	0.16323	1	7518	7518		1.9275	1.5192	1		+		29654	16800	21289	21455	29015	29015					-0.05276039214618322
LEQQKQLL	8	Unmodified	_LEQQKQLL_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;ENST00000487258.5_1_7:91722364-91739470:+|nuORF	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-SECPEP	A375_MHC_IP_R1	1	500.6950378417969	2	500.295299	998.576045	-0.34003	-0.00017011	-0.4206	-0.00021043	-0.76063	-0.00038054	500.29514648908366	57.243	0.51031	57.243	57.007	57.518	0					20	9	3	0	0	0	0.73227	1	20534	20534		37.974	0	1	5839400			29655	4108	21290	21456	29016	29016					0.07670029477333173
LEQQRIGLA	9	Unmodified	_LEQQRIGLA_					0	0	0		nc|ENSG00000162825|P0DPF2|NBPF20;ENSG00000162825|ENST00000698833|NBPF20;ENSG00000263956|ENST00000682118|NBPF11	nc|ENSG00000162825|P0DPF2|NBPF20	nc|ENSG00000162825|P0DPF2|NBPF20	MULTI-SECPEP	A375_MHC_IP_R2	2	514.6980590820312	2	514.298373	1026.58219	-0.70249	-0.00036129	0.097829	5.0314E-05	-0.60466	-0.00031098	514.2982710537668	132.6	2.4918	132.79	131.95	134.44	0.18953					68	48	2	0	0	0	0.79683	1	52000	52000		0.6015	0	1	5520100			29656	6601	21291	21457	29017	29017					0.0699654770885445
LEQQRQQLL	9	Unmodified	_LEQQRQQLL_					0	0	0		ENSG00000173473|ENST00000254480|SMARCC1	ENSG00000173473|ENST00000254480|SMARCC1	ENSG00000173473|ENST00000254480|SMARCC1	MULTI-MSMS	A375_MHC_IP_R2	2	579.2286376953125	2	578.327662	1154.64077	-0.48663	-0.00028143	0.020313	1.1747E-05	-0.46632	-0.00026968	578.3274620109324	58.077	0.40408	58.826	58.679	59.083	0.74895					13	7	3	0	0	0	0.32889	1	22009	22009		30.637	5.2372	1	1626300			29657	7800	21292	21458	29018	29018					0.06963604283328095
LEQRRVQKW	9	Unmodified	_LEQRRVQKW_					0	0	0		ENST00000356887.11_1_2:127413562-127413658:+|nuORF	ENST00000356887.11_1_2:127413562-127413658:+|nuORF	ENST00000356887.11_1_2:127413562-127413658:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	622.256103515625	2	621.856921	1241.69929	-0.37554	-0.00023353	-1.8716	-0.0011639	-2.2472	-0.0013974	621.856431648981	77.933	0.35677	77.933	77.742	78.099	0					8	6	2	0	0	0	0.73363	1	28493	28493		10.824	3.215	1	1463600			29658	10973	21293	21459	29019	29019					0.08810705648465955
LEQRRVQKW	9	Unmodified	_LEQRRVQKW_					0	0	0		ENST00000356887.11_1_2:127413562-127413658:+|nuORF	ENST00000356887.11_1_2:127413562-127413658:+|nuORF	ENST00000356887.11_1_2:127413562-127413658:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	621.856921	1241.69929	-0.73646	-0.00045797	-0.62579	-0.00038915	-1.3623	-0.00084713	621.8566782690451	77.13	0.35431	77.873	77.707	78.062	0.74293	-0.029908	0.00061583	NaN	10.824	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	823510			29659	10973	21293	21459							0.08810705648465955
LEQRSYEM	8	Unmodified	_LEQRSYEM_					0	0	0			REV__ENST00000555020.5_1_9:34647742-34648507:+|nuORF	REV__ENST00000555020.5_1_9:34647742-34648507:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	528.1663208007812	2	528.244949	1054.47534	-0.21707	-0.00011466	-2.9662	-0.0015669	-3.1832	-0.0016815	528.7455175542387	44.483	0.51199	44.483	44.165	44.676	0					18	9	3	0	0	0	0.972	1	15451	15451		14.838	0.93222	1	2671800	+		29660	22636	21294	21460	29020	29020					-0.04971370567818667
LEQSLQPGL	9	Unmodified	_LEQSLQPGL_					0	0	0		ENSG00000170122|ENST00000382500|FOXD4;ENSG00000184492|ENST00000306507|FOXD4L1;ENSG00000204779|ENST00000377420|FOXD4L5;ENSG00000184659|ENST00000377413|FOXD4L4;ENSG00000273514|ENST00000622588|FOXD4L6;ENSG00000187559|ENST00000342833|FOXD4L3	ENSG00000170122|ENST00000382500|FOXD4	ENSG00000170122|ENST00000382500|FOXD4	MSMS	A375_MHC_IP_R1	1	492.7165222167969	2	492.771657	983.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.238	1	91.238	90.738	91.738	0								0	0	0	0.1535	1	33524	33524		15.847	1.0089	1				29661	7473	21295	21461	29021	29021					0.03633750206347486
LEQTHQQI	8	Unmodified	_LEQTHQQI_					0	0	0			REV__ENSG00000105388|ENST00000221992|CEACAM5	REV__ENSG00000105388|ENST00000221992|CEACAM5	MULTI-SECPEP	A375_MHC_IP_R1	1	498.72149658203125	2	498.759081	995.503609	-0.42017	-0.00020956	-1.9736	-0.00098436	-2.3938	-0.0011939	498.75820090494835	39.427	0.25277	39.427	39.289	39.541	0					5	4	2	0	0	0	0.92636	1	13450	13450		16.942	2.3606	1	703970	+		29662	17377	21296	21462	29022	29022					0.005676954037653559
LEQTLQRIKQ	10	Unmodified	_LEQTLQRIKQ_					0	0	0			REV__nc|ENSG00000263155|P0CAP1-5|MYZAP	REV__nc|ENSG00000263155|P0CAP1-5|MYZAP	MSMS	A375_MHC_IP_R2	2	628.8441162109375	2	628.869694	1255.72483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.167	1	54.918	54.418	55.418	0.75089								0	0	0	0.15451	1	20445	20445		6.2058	0	1		+		29663	27537	21297	21463	29023	29023					0.10720135380211104
LEQTTFVRY	9	Unmodified	_LEQTTFVRY_					0	0	0			REV__nc|ENSG00000100591|O95433-2|AHSA1	REV__nc|ENSG00000100591|O95433-2|AHSA1	MULTI-SECPEP	A375_MHC_IP_R2	2	386.6047668457031	3	386.204751	1155.59242	-0.76742	-0.00029638	0.59356	0.00022923	-0.17386	-6.7147E-05	386.20494068373074	37.09	0.60773	37.861	37.513	38.12	0.7709					20	11	2	0	0	0	0.67483	1	13532	13532		6.6304	0	1	11263000	+		29664	17105	21298	21464	29024	29024					0.02085110643452026
LEQVEAYQA	9	Unmodified	_LEQVEAYQA_					0	0	0		nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;ENST00000469599.6_1_Y:21868632-21871788:-|nuORF;ENST00000492117.1_1_Y:21868632-21877911:-|nuORF;nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D	nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000126012|P41229-2|KDM5C	MULTI-SECPEP	A375_MHC_IP_R1	1	526.1580810546875	2	525.758746	1049.50294	-0.43241	-0.00022734	-0.36706	-0.00019299	-0.79947	-0.00042033	525.7585500635233	102.66	0.96413	102.66	102.3	103.27	0					30	18	3	0	0	0	0.73363	1	37722	37722		3.5965	0	1	2882000			29665	4020;1013	21299	21465	29025	29025					-0.01983144035943951
LEQVFFAE	8	Unmodified	_LEQVFFAE_					0	0	0			REV__ENSG00000132793|ENST00000373257|LPIN3	REV__ENSG00000132793|ENST00000373257|LPIN3	MULTI-SECPEP	A375_MHC_IP_R2	2	492.1474304199219	2	491.74765	981.480748	-0.394	-0.00019375	0.40488	0.0001991	0.010884	5.352E-06	491.747788144318	93.522	0.66083	94.267	93.956	94.616	0.74474					16	12	2	0	0	0	0.69122	1	35570	35570		39.957	0	1	1123300	+		29666	18682	21300	21466	29026	29026					-0.010733237137060314
LEQVRLFW	8	Unmodified	_LEQVRLFW_					0	0	0			REV__ZNF410|p.P163L|1|0.41|ENSG00000119725|chr14:73898170-73898170|C/T|missense_variant	REV__ZNF410|p.P163L|1|0.41|ENSG00000119725|chr14:73898170-73898170|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	546.2058715820312	2	545.805834	1089.59712	-0.72907	-0.00039793	0.90729	0.0004952	0.17822	9.7273E-05	545.8059405385693	101.68	0.71016	102.44	102.11	102.82	0.76428					27	13	3	0	0	0	0.972	1	38526	38526		6.2058	0	1	3224600	+		29667	18093	21301	21467	29027	29027					0.055900395768503586
LERALKLQP	9	Unmodified	_LERALKLQP_					0	0	0		ENSG00000101004|ENST00000278886|NINL	ENSG00000101004|ENST00000278886|NINL	ENSG00000101004|ENST00000278886|NINL	MULTI-SECPEP	A375_MHC_IP_R1	1	356.9853210449219	3	356.557236	1066.64988	0.25281	9.014E-05	0.70268	0.00025055	0.95549	0.00034069	356.557403340802	43.069	0.35611	43.069	42.841	43.197	0					8	6	2	0	0	0	0.78348	1	14912	14912		0.96228	0	1	888460			29668	2244	21302	21468	29028	29028					0.11921997639660731
LERCCRRW	8	Unmodified	_LERCCRRW_					0	0	0		ENST00000421980.5_1_7:99716680-99716935:-|nuORF	ENST00000421980.5_1_7:99716680-99716935:-|nuORF	ENST00000421980.5_1_7:99716680-99716935:-|nuORF	MSMS	A375_MHC_IP_R1	1	561.2025146484375	2	561.276395	1120.53824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.173	1	95.173	94.673	95.673	0								0	0	0	0.16876	1	34980	34980		9.3474	1.4373	1				29669	11743	21303	21469	29029	29029					-0.0172108326075886
LEREGQAEM	9	Unmodified	_LEREGQAEM_					0	0	0			REV__nc|ENSG00000126001|Q9BV73-2|CEP250	REV__nc|ENSG00000126001|Q9BV73-2|CEP250	MULTI-SECPEP	A375_MHC_IP_R2	2	532.2002563476562	2	531.747856	1061.48116	-0.60508	-0.00032175	1.8379	0.0009773	1.2328	0.00065555	531.7496392749116	67.901	0.96759	68.636	68	68.968	0.73511					32	18	3	0	0	0	0.63327	1	25791	25791		13.042	5.7532	1	1652000	+		29670	18376	21304	21470	29030	29030					-0.047122720561674214
LEREVQYTL	9	Unmodified	_LEREVQYTL_					0	0	0		nc|ENSG00000168522|P49354-2|FNTA;ENSG00000168522|ENST00000302279|FNTA;ENST00000530657.1_1_11:85906626-85907241:+|nuORF	nc|ENSG00000168522|P49354-2|FNTA	nc|ENSG00000168522|P49354-2|FNTA	MULTI-SECPEP	A375_MHC_IP_R1	1	384.6278991699219	3	384.208273	1149.60299	0.17204	6.6098E-05	-0.39606	-0.00015217	-0.22403	-8.6073E-05	384.2080042026529	19.375	0.94248	19.375	19.238	20.18	0					24	18	2	0	0	0	0.71071	1	4799	4799		3.8763	0	1	4138500			29671	7315	21305	21471	29031	29031					0.034170932978668134
LEREWVTV	8	Unmodified	_LEREWVTV_					0	0	0			REV__ENST00000590898.5_1_18:33620811-33647397:-|nuORF	REV__ENST00000590898.5_1_18:33620811-33647397:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	516.1809692382812	2	516.279649	1030.54475	-1.1609	-0.00059934	-0.6817	-0.00035195	-1.8426	-0.00095129	516.7804104567593	59.043	0.35542	59.791	59.641	59.996	0.74714					10	6	2	0	0	0	0.94479	1	22329	22329		4.756	2.9118	1	1280700	+		29672	19261	21306	21472	29032	29032					0.030694564432451443
LERFDIKL	8	Unmodified	_LERFDIKL_					0	0	0		ENST00000506586.1_1_5:93928514-93929327:+|nuORF;nc|ENSG00000138399|Q53R41-2|FASTKD1;ENSG00000138399|ENST00000453153|FASTKD1	ENST00000506586.1_1_5:93928514-93929327:+|nuORF;nc|ENSG00000138399|Q53R41-2|FASTKD1	ENST00000506586.1_1_5:93928514-93929327:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	517.5587158203125	2	517.305667	1032.59678	-0.75461	-0.00039037	-0.58737	-0.00030385	-1.342	-0.00069422	517.3054535841403	77.597	0.30281	78.34	78.165	78.468	0.74293					9	5	2	0	0	0	0.95423	1	29504	29504		4.3292	0	1	2652600			29673	12857;4990	21307	21473	29033	29033					0.08178619856994374
LERGVLAR	8	Unmodified	_LERGVLAR_					0	0	0			REV__ENSG00000175073|ENST00000310421|VCPIP1	REV__ENSG00000175073|ENST00000310421|VCPIP1	MULTI-SECPEP	A375_MHC_IP_R1	1	457.6823425292969	2	457.282526	912.550499	-0.5231	-0.0002392	0.17005	7.7761E-05	-0.35305	-0.00016144	457.2824955430967	134.9	2.1441	134.9	134.73	136.87	0					101	41	5	0	0	0	0.972	1	52212	52212		4.756	2.4533	1	127370000	+		29674	21322	21308	21474	29034	29034					0.09072599745559273
LERIFLTYN	9	Unmodified	_LERIFLTYN_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	A375_MHC_IP_R1	1	390.3076477050781	3	390.21688	1167.62881	0.014136	5.516E-06	0.2518	9.8255E-05	0.26593	0.00010377	390.2170204226615	53.123	0.55695	53.123	52.897	53.453	0					23	10	3	0	0	0	0.76642	1	18853	18853		5.7834	0	1	4175700	+		29675	16347	21309	21475	29035	29035					0.05169987540148213
LERIIRPLS	9	Unmodified	_LERIIRPLS_					0	0	0		ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	MULTI-MSMS	A375_MHC_IP_R1	1	549.906005859375	2	548.84549	1095.67643	-0.543	-0.00029802	-0.10501	-5.7637E-05	-0.64801	-0.00035566	548.8455030322743	77.476	0.45508	77.476	77.184	77.639	0					17	8	3	0	0	0	0.75032	1	28248	28248		4.3292	0	1	1987100			29676	9863	21310	21476	29036	29036					0.1324168653097786
LERIIRPLS	9	Unmodified	_LERIIRPLS_					0	0	0		ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	548.84549	1095.67643	-0.543	-0.00029802	-0.10501	-5.7637E-05	-0.64801	-0.00035566	548.8455030322743	77.476	0.45508	77.476	77.184	77.639	0	0	0	NaN	4.3292	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1987100			29677	9863	21310	21476							0.1324168653097786
LERITKLFH	9	Unmodified	_LERITKLFH_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-SECPEP	A375_MHC_IP_R1	1	385.6473693847656	3	386.232752	1155.67643	0.056846	2.1956E-05	0.096747	3.7367E-05	0.15359	5.9323E-05	386.2326853451044	24.305	0.45565	24.305	24.092	24.547	0					10	8	2	0	0	0	0.76642	1	6984	6984		3.3196	0	1	4502300			29678	1997	21311	21477	29037	29037					0.10481686530988554
LERKDLEL	8	Unmodified	_LERKDLEL_					0	0	0		ENSG00000230453|ENST00000684830|ANKRD18B;nc|ENSG00000230453|A2A2Z9|ANKRD18B;ENST00000354752.5_1_9:99942307-99949763:-|nuORF	ENSG00000230453|ENST00000684830|ANKRD18B;ENST00000354752.5_1_9:99942307-99949763:-|nuORF	ENST00000354752.5_1_9:99942307-99949763:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	508.69268798828125	2	508.292756	1014.57096	-0.29581	-0.00015036	-0.14891	-7.5688E-05	-0.44472	-0.00022605	508.2926636138178	56.573	0.96504	56.573	56.194	57.159	0					41	18	3	0	0	0	0.19796	1	20234	20234		61.357	0	1	50092000			29679	9717;10945	21312	21478	29038	29038					0.06425725614712974
LERKDLEL	8	Unmodified	_LERKDLEL_					0	0	0		ENSG00000230453|ENST00000684830|ANKRD18B;nc|ENSG00000230453|A2A2Z9|ANKRD18B;ENST00000354752.5_1_9:99942307-99949763:-|nuORF	ENSG00000230453|ENST00000684830|ANKRD18B;ENST00000354752.5_1_9:99942307-99949763:-|nuORF	ENST00000354752.5_1_9:99942307-99949763:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	508.6922302246094	2	508.292756	1014.57096	-0.82834	-0.00042104	-0.0091946	-4.6736E-06	-0.83753	-0.00042571	508.29271155918894	55.562	1.3229	56.312	55.984	57.307	0.75075					47	25	3	0	0	0	0.25559	1	20992	20992		57.471	0	1	54627000			29680	9717;10945	21312	21478	29039	29039					0.06425725614712974
LERKKKKSYRW	11	Unmodified	_LERKKKKSYRW_					0	0	0		ENSG00000134571|ENST00000545968|MYBPC3;nc|ENSG00000134571|Q14896-2|MYBPC3	ENSG00000134571|ENST00000545968|MYBPC3	ENSG00000134571|ENST00000545968|MYBPC3	MSMS	A375_MHC_IP_R1	1	507.98016357421875	3	507.971932	1520.89397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.764	1	55.764	55.264	56.264	0								0	0	0	0.16338	1	19956	19956		1.1098	1.0149	1				29681	4588	21313	21479	29040	29040					0.15435456733598585
LERKKVLVRY	10	Unmodified	_LERKKVLVRY_					0	0	0			REV__ENSG00000167306|ENST00000285039|MYO5B	REV__ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	A375_MHC_IP_R1	1	652.3449096679688	2	652.414072	1302.81359	-0.17787	-0.00011605	0.93235	0.00060828	0.75448	0.00049223	652.4134671112788	109.5	0.25638	109.5	109.42	109.68	0					5	4	2	0	0	0	0.94819	1	40155	40155		0	0	1	746200	+		29682	20747	21314	21480	29041	29041					0.17429595410590082
LERKLKKVRLR	11	Unmodified	_LERKLKKVRLR_					0	0	0			REV__nc|ENSG00000151718|Q6AWC2-5|WWC2	REV__nc|ENSG00000151718|Q6AWC2-5|WWC2	MSMS	A375_MHC_IP_R2	2	719.8399047851562	2	719.988269	1437.96199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.834	1	98.59	98.09	99.09	0.75586								0	0	0	0.16353	1	37127	37127		0.35063	0.35063	1		+		29683	19768	21315	21481	29042	29042					0.2605232638427424
LERKLTVKAK	10	Unmodified	_LERKLTVKAK_					0	0	0			REV__ENST00000495907.5_1_2:11864756-11881531:+|nuORF	REV__ENST00000495907.5_1_2:11864756-11881531:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	396.5934753417969	3	395.92744	1184.76049	0.1867	7.3922E-05	-0.61546	-0.00024368	-0.42876	-0.00016976	395.9273509145807	21.402	0.70998	21.402	20.946	21.656	0					15	13	2	0	0	0	0.94651	1	5634	5634		0.62683	0	1	480560	+		29684	25452	21316	21482	29043	29043					0.17550217627899656
LERKQRRMCRR	11	Unmodified	_LERKQRRMCRR_					0	0	0		ENSG00000143816|ENST00000272164|WNT9A	ENSG00000143816|ENST00000272164|WNT9A	ENSG00000143816|ENST00000272164|WNT9A	MSMS	A375_MHC_IP_R2	2	766.3695068359375	2	766.43027	1530.84599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.47	1	149.48	148.98	149.98	0.01825								0	0	0	0.16354	1	58010	58010		0.30703	0	1				29685	5438	21317	21483	29044	29044					0.10179736270242756
LERKYAELY	9	Unmodified	_LERKYAELY_					0	0	0		NAP1L4|p.A97E|1|0.46|ENSG00000205531|chr11:2972127-2972127|G/T|missense_variant	NAP1L4|p.A97E|1|0.46|ENSG00000205531|chr11:2972127-2972127|G/T|missense_variant	NAP1L4|p.A97E|1|0.46|ENSG00000205531|chr11:2972127-2972127|G/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	396.1643371582031	3	395.548518	1183.62372	-0.35822	-0.00014169	-0.60659	-0.00023994	-0.96481	-0.00038163	395.548267563307	54.42	0.40364	55.17	54.967	55.37	0.75075					12	7	2	0	0	0	0.79191	1	20465	20465		0.77653	0	1	756090			29686	14444	21318	21484	29045	29045					0.03925683677516645
LERLEEIHL	9	Unmodified	_LERLEEIHL_					0	0	0			REV__ENSG00000087302|ENST00000261700|RTRAF	REV__ENSG00000087302|ENST00000261700|RTRAF	MSMS	A375_MHC_IP_R1	1	576.7232666015625	2	576.324588	1150.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.898	1	70.898	70.398	71.398	0								0	0	0	0.15003	1	25750	25750		21.537	0	1		+		29687	16872	21319	21485	29046	29046					0.06533086051808823
LERLGYSEDG	10	Unmodified	_LERLGYSEDG_					0	0	0		ENSG00000148602|ENST00000372105|LRIT1	ENSG00000148602|ENST00000372105|LRIT1	ENSG00000148602|ENST00000372105|LRIT1	MULTI-SECPEP	A375_MHC_IP_R2	2	569.6079711914062	2	569.772385	1137.53022	-0.58831	-0.0003352	0.21346	0.00012162	-0.37485	-0.00021358	569.7724386866965	36.428	0.66254	37.199	36.901	37.564	0.7709					26	12	4	0	0	0	0.83355	1	13280	13280		22.736	0	1	3675400			29688	5753	21320	21486	29047	29047					-0.03304660495564349
LERLLRVRRRF	11	Unmodified	_LERLLRVRRRF_					0	0	0			REV__ENSG00000165124|ENST00000374469|SVEP1	REV__ENSG00000165124|ENST00000374469|SVEP1	MSMS	A375_MHC_IP_R2	2	757.5445556640625	2	757.481143	1512.94773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.362	1	97.112	96.612	97.612	0.75045								0	0	0	0.16331	1	36588	36588		1.4819	0.28856	1		+		29689	20550	21321	21487	29048	29048					0.2117767395593546
LERLRKDM	8	Unmodified	_LERLRKDM_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-SECPEP	A375_MHC_IP_R1	1	354.9533386230469	3	354.202576	1059.5859	-0.49968	-0.00017699	-0.26708	-9.46E-05	-0.76676	-0.00027159	354.20259381903253	29.428	0.15066	29.428	29.302	29.453	0					6	2	3	0	0	0	0.972	1	9162	9162		7.609	1.8771	1	14078000			29690	9277	21322	21488	29049	29049					0.05848894211044353
LERLRKDM	8	Unmodified	_LERLRKDM_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-MATCH	A375_MHC_IP_R2	2		3	354.202576	1059.5859	-0.76421	-0.00027069	-0.18376	-6.5089E-05	-0.94797	-0.00033577	354.53683492601556	28.56	0.20149	29.259	29.132	29.333	0.69872	-0.084753	1.4727E-05	NaN	7.609	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18792000			29691	9277	21322	21488							0.05848894211044353
LERLRRRSLV	10	Unmodified	_LERLRRRSLV_					0	0	0		ENSG00000178878|ENST00000356591|APOLD1;nc|ENSG00000178878|Q96LR9|APOLD1	ENSG00000178878|ENST00000356591|APOLD1	ENSG00000178878|ENST00000356591|APOLD1	MSMS	A375_MHC_IP_R2	2	433.2853698730469	3	433.277355	1296.81024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.56	1	138.65	138.15	139.15	0.083969								0	0	0	0.1562	1	54331	54331		0.69767	0	1				29692	8183	21323	21489	29050	29050					0.17370345356539474
LERLSLYTP	9	Unmodified	_LERLSLYTP_					0	0	0			REV__ENSG00000232434|ENST00000436881|AJM1	REV__ENSG00000232434|ENST00000436881|AJM1	MULTI-MSMS	A375_MHC_IP_R2	2	545.76171875	2	546.308406	1090.60226	-0.77085	-0.00042112	-0.39036	-0.00021326	-1.1612	-0.00063438	546.3081345338953	83.287	1.1138	84.026	83.242	84.356	0.73962					32	16	3	0	0	0	0.69317	1	31537	31537		7.2892	0	1	2587300	+		29693	22746	21324	21490	29051	29051					0.06058298648804339
LERLTLRKKRH	11	Unmodified	_LERLTLRKKRH_					0	0	0			REV__ENST00000447263.1_1_1:39980824-39982159:+|nuORF	REV__ENST00000447263.1_1_1:39980824-39982159:+|nuORF	MSMS	A375_MHC_IP_R1	1	725.5637817382812	2	725.459876	1448.9052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.83	1	115.83	115.33	116.33	0								0	0	0	0.16331	1	42480	42480		1.4819	0.15237	1		+		29694	24867	21325	21491	29052	29052					0.19870278827715993
LERNHTNVMNV	11	Unmodified	_LERNHTNVMNV_					0	0	0		ENST00000600120.5_1_19:53612282-53612552:-|nuORF	ENST00000600120.5_1_19:53612282-53612552:-|nuORF	ENST00000600120.5_1_19:53612282-53612552:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	664.2068481445312	2	663.832785	1325.65102	-0.87737	-0.00058242	0.77019	0.00051127	-0.10718	-7.1151E-05	663.8332728266234	74.431	1.1195	75.169	74.501	75.621	0.73751					43	21	3	0	0	0	0.7039	1	28368	28368		15.248	3.0078	1	3041700			29695	13865	21326	21492	29053	29053					0.0012184394624910055
LERNIRELR	9	Unmodified	_LERNIRELR_					0	0	0			REV__ENSG00000051825|ENST00000606320|MPHOSPH9	REV__ENSG00000051825|ENST00000606320|MPHOSPH9	MULTI-SECPEP	A375_MHC_IP_R1	1	399.6335754394531	3	400.238678	1197.6942	-0.51698	-0.00020691	0.25996	0.00010405	-0.25702	-0.00010287	400.238671270063	23.915	0.35509	23.915	23.787	24.143	0					8	6	2	0	0	0	0.75519	1	6771	6771		10.151	0	1	2931700	+		29696	16392	21327	21493	29054	29054					0.10326401785846429
LERNKEYNQF	10	Unmodified	_LERNKEYNQF_					0	0	0		nc|ENSG00000104218|Q1MSJ5-1|CSPP1;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1	nc|ENSG00000104218|Q1MSJ5-1|CSPP1	nc|ENSG00000104218|Q1MSJ5-1|CSPP1	MULTI-MSMS	A375_MHC_IP_R1	1	447.9577331542969	3	447.557964	1339.65206	-0.068336	-3.0584E-05	-0.63567	-0.0002845	-0.70401	-0.00031508	447.55765273774597	55.429	0.56191	55.429	55.279	55.841	0					17	10	2	0	0	0	0.64017	1	19833	19833		17.863	6.2318	1	3793800			29697	2491	21328	21494	29055	29055					-0.004176184132120397
LERNLMRKF	9	Unmodified	_LERNLMRKF_					0	0	0			REV__ENSG00000065989|ENST00000380702|PDE4A	REV__ENSG00000065989|ENST00000380702|PDE4A	MULTI-SECPEP	A375_MHC_IP_R1	1	402.13226318359375	3	402.897375	1205.6703	-0.38709	-0.00015596	-2.0964	-0.00084463	-2.4835	-0.0010006	402.89618048392464	40.218	0.4085	40.218	40.1	40.509	0					12	7	2	0	0	0	0.75519	1	13775	13775		10.151	0.6066	1	1950100	+		29698	16507	21329	21495	29056	29056					0.07568845027799398
LERNQPLH	8	Unmodified	_LERNQPLH_					0	0	0			REV__nc|ENSG00000243667|Q96MX6-2|DNAAF10	REV__nc|ENSG00000243667|Q96MX6-2|DNAAF10	MULTI-SECPEP	A375_MHC_IP_R1	1	504.163330078125	2	503.775065	1005.53558	-0.41986	-0.00021152	-0.81931	-0.00041275	-1.2392	-0.00062426	503.7745036696348	31.895	0.665	31.895	31.718	32.383	0					18	12	2	0	0	0	0.8824	1	10382	10382		16.942	0	1	2859200	+		29699	22810	21330	21496	29057	29057					0.0330310787757071
LERPARQGL	9	Unmodified	_LERPARQGL_					0	0	0		ENST00000477970.1_1_1:44078891-44086093:+|nuORF	ENST00000477970.1_1_1:44078891-44086093:+|nuORF	ENST00000477970.1_1_1:44078891-44086093:+|nuORF	MSMS	A375_MHC_IP_R1	1	520.279541015625	2	520.30399	1038.59343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.048	1	84.048	83.548	84.548	0								0	0	0	0.15486	1	30774	30774		9.3831	2.0939	1				29700	12451	21331	21497	29058	29058					0.07567369802995927
LERPDLREKVI	11	Unmodified	_LERPDLREKVI_					0	0	0		nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-2|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENSG00000163636|ENST00000295901|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6;ENST00000497315.5_1_3:64004227-64005057:-|nuORF	nc|ENSG00000163636|Q15008-3|PSMD6	nc|ENSG00000163636|Q15008-3|PSMD6	MULTI-SECPEP	A375_MHC_IP_R2	2	457.1785583496094	3	456.605026	1366.79325	-0.066942	-3.0566E-05	-0.13594	-6.2073E-05	-0.20289	-9.2639E-05	456.6047600086117	140.87	0.25786	140.91	140.81	141.06	0.04216					6	4	2	0	0	0	1.0014	1	55156	55156		0.08335	0.08335	1	392270			29701	6699	21332	21498	29059	29059					0.12452379960063809
LERPDLREKVI	11	Unmodified	_LERPDLREKVI_					0	0	0		nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-2|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENSG00000163636|ENST00000295901|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6;ENST00000497315.5_1_3:64004227-64005057:-|nuORF	nc|ENSG00000163636|Q15008-3|PSMD6	nc|ENSG00000163636|Q15008-3|PSMD6	MULTI-MATCH	A375_MHC_IP_R1	1		3	456.605026	1366.79325	-0.59967	-0.00027381	-0.62566	-0.00028568	-1.2253	-0.00055949	456.6046530870594	140.86	0.25761	140.86	140.75	141.01	0	-0.025811	-0.00022967	NaN	0.08335	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	621000			29702	6699	21332	21498							0.12452379960063809
LERPVLLRK	9	Unmodified	_LERPVLLRK_					0	0	0		ENST00000509635.5_1_4:83378179-83381169:+|nuORF	ENST00000509635.5_1_4:83378179-83381169:+|nuORF	ENST00000509635.5_1_4:83378179-83381169:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	375.64849853515625	3	375.248514	1122.72371	0.92201	0.00034598	-0.67605	-0.00025369	0.24596	9.2295E-05	375.24825059334864	44.883	0.40419	44.883	44.676	45.081	0					13	7	2	0	0	0	0.69956	1	15717	15717		7.0371	3.45	1	2289000			29703	12893	21333	21499	29060	29060					0.1672596580199297
LERPVLLRK	9	Unmodified	_LERPVLLRK_					0	0	0		ENST00000509635.5_1_4:83378179-83381169:+|nuORF	ENST00000509635.5_1_4:83378179-83381169:+|nuORF	ENST00000509635.5_1_4:83378179-83381169:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	375.248514	1122.72371	0.50658	0.00019009	-0.27909	-0.00010473	0.2275	8.5368E-05	375.24833533006085	43.836	0.35273	44.605	44.43	44.782	0.7691	-0.13896	0.00019347	NaN	7.0371	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2205800			29704	12893	21333	21499							0.1672596580199297
LERQLHELR	9	Unmodified	_LERQLHELR_					0	0	0			REV__nc|ENSG00000168071|A6NC98-5|CCDC88B	REV__nc|ENSG00000168071|A6NC98-5|CCDC88B	MULTI-MSMS	A375_MHC_IP_R1	1	398.962890625	3	398.563161	1192.66765	-0.17205	-6.8572E-05	-0.8726	-0.00034779	-1.0446	-0.00041636	398.56275906717076	23.1	0.96177	23.1	22.673	23.635	0					31	18	2	0	0	0	0.64945	1	6332	6332		11.518	0	1	20843000	+		29705	27345	21334	21500	29061	29061					0.07902712894497199
LERQQRRRFRF	11	Unmodified	_LERQQRRRFRF_					0	0	0		ENST00000593149.5_1_19:39109743-39110988:+|nuORF	ENST00000593149.5_1_19:39109743-39110988:+|nuORF	ENST00000593149.5_1_19:39109743-39110988:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	399.30487060546875	4	398.731466	1590.89676	-0.34345	-0.00013695	-0.72245	-0.00028806	-1.0659	-0.00042501	398.73114598935155	19.446	0.45714	19.446	19.268	19.725	0					17	8	3	0	0	0	1.0015	1	4857	4857		0.094841	0	1	5471700			29706	13823	21335	21501	29062	29062					0.12494724911107369
LERQQVYL	8	Unmodified	_LERQQVYL_					0	0	0			REV__ENST00000567420.1_1_16:15141297-15141917:-|nuORF	REV__ENST00000567420.1_1_16:15141297-15141917:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	525.17431640625	2	524.792924	1047.57129	-0.43413	-0.00022783	-0.48554	-0.00025481	-0.91967	-0.00048264	524.7927329876467	47.453	0.30196	47.453	47.366	47.668	0					9	5	2	0	0	0	0.972	1	16720	16720		0.69038	0	1	1746900	+		29707	20007	21336	21502	29063	29063					0.049411453345555856
LERQVKEL	8	Unmodified	_LERQVKEL_					0	0	0		TMEM109|p.E224K|1|0.5|ENSG00000110108|chr11:60922103-60922103|G/A|missense_variant	TMEM109|p.E224K|1|0.5|ENSG00000110108|chr11:60922103-60922103|G/A|missense_variant	TMEM109|p.E224K|1|0.5|ENSG00000110108|chr11:60922103-60922103|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	508.0962219238281	2	507.800749	1013.58694	-1.0701	-0.00054337	-0.066076	-3.3553E-05	-1.1361	-0.00057693	507.8007136395303	34.184	0.55958	34.936	34.753	35.312	0.75225					24	10	3	0	0	0	0.55971	1	12363	12363		29.841	0	1	29876000			29708	29359	21337	21503	29064	29064					0.0806943185162936
LERRDILNF	9	Unmodified	_LERRDILNF_					0	0	0			REV__ENSG00000114978|ENST00000396049|MOB1A	REV__ENSG00000114978|ENST00000396049|MOB1A	MULTI-MSMS	A375_MHC_IP_R1	1	392.9559020996094	3	392.555895	1174.64586	-0.016409	-6.4413E-06	2.7315	0.0010722	2.715	0.0010658	392.5571261535332	52.767	0.71177	52.767	52.387	53.099	0					24	13	2	0	0	0	0.65721	1	18721	18721		15.248	9.465	1	1796500	+		29709	17849	21338	21504	29065	29065					0.06551908145956986
LERREVEPY	9	Unmodified	_LERREVEPY_					0	0	0			REV__nc|ENSG00000158813|Q92838-2|EDA	REV__nc|ENSG00000158813|Q92838-2|EDA	MULTI-SECPEP	A375_MHC_IP_R2	2	397.62579345703125	3	397.543655	1189.60914	-0.13946	-5.5443E-05	-0.94534	-0.00037581	-1.0848	-0.00043126	397.8774174958025	39.904	0.35535	40.678	40.473	40.828	0.77451					9	6	2	0	0	0	0.77834	1	14814	14814		5.2969	0	1	934560	+		29710	20091	21339	21505	29066	29066					0.021916115294061456
LERRLKHI	8	Unmodified	_LERRLKHI_					0	0	0			REV__ENSG00000067798|ENST00000397909|NAV3	REV__ENSG00000067798|ENST00000397909|NAV3	MSMS	A375_MHC_IP_R1	1	355.609375	3	355.561092	1063.66145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.508	1	43.508	43.008	44.008	0								0	0	0	0.16876	1	15128	15128		3.9444	0	1		+		29711	16534	21340	21506	29067	29067					0.13216239453663547
LERRLKRPRTQ	11	Unmodified	_LERRLKRPRTQ_					0	0	0		ENSG00000118655|ENST00000650450|DCLRE1B;ENST00000466480.1_1_1:114448336-114454776:+|nuORF	ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	MULTI-MSMS	A375_MHC_IP_R2	2	485.3677673339844	3	484.967181	1451.87971	-0.90341	-0.00043813	1.3953	0.00067666	0.49185	0.00023853	484.96807712657346	60.993	0.75682	61.738	61.515	62.272	0.74503					27	14	3	0	0	0	0.73715	1	23141	23141		2.084	0.86914	1	5092500			29712	3555	21341	21507	29068	29068					0.17184804305315993
LERRNGIFQ	9	Unmodified	_LERRNGIFQ_					0	0	0			REV__ENST00000484998.5_1_20:2635830-2636687:+|nuORF	REV__ENST00000484998.5_1_20:2635830-2636687:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	378.6120910644531	3	378.21224	1131.61489	-0.10832	-4.0969E-05	0.90632	0.00034278	0.79799	0.00030181	378.212547123928	49.944	0.96609	50.698	50.294	51.26	0.75406					48	18	4	0	0	0	0.65246	1	18779	18779		15.248	5.0979	1	2552400	+		29713	17166	21342	21508	29069	29069					0.05434754831708233
LERRRGPLV	9	Unmodified	_LERRRGPLV_					0	0	0		ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	MULTI-SECPEP	A375_MHC_IP_R2	2	548.195556640625	2	548.340907	1094.66726	-0.96024	-0.00052654	-4.3127	-0.0023648	-5.2729	-0.0028914	548.8413925614384	97.325	0.25502	98.081	97.923	98.178	0.75587					6	4	2	0	0	0	0.77834	1	36902	36902		2.0598	0	1	461730			29714	2051	21343	21509	29070	29070					0.12371337965328166
LERRRKRRHQK	11	Unmodified	_LERRRKRRHQK_					0	0	0		ENST00000233379.8_1_2:96079888-96080107:+|nuORF	ENST00000233379.8_1_2:96079888-96080107:+|nuORF	ENST00000233379.8_1_2:96079888-96080107:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	391.8946228027344	4	391.494825	1561.95019	-0.095679	-3.7458E-05	-0.21566	-8.4428E-05	-0.31134	-0.00012189	391.4945761422714	69.568	0.66084	70.302	69.981	70.642	0.73421					25	12	3	0	0	0	0.73924	1	26401	26401		0.094841	0.021578	1	2044500			29715	10151	21344	21510	29071	29071					0.19169522413631057
LERRRRRSRCP	11	Unmodified	_LERRRRRSRCP_					0	0	0		ENST00000472073.1_1_22:19127492-19130053:-|nuORF	ENST00000472073.1_1_22:19127492-19130053:-|nuORF	ENST00000472073.1_1_22:19127492-19130053:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	496.0187072753906	3	495.619898	1483.83786	-0.2267	-0.00011236	-1.3093	-0.00064892	-1.536	-0.00076127	495.6190925678533	51.791	0.4088	51.791	51.625	52.034	0					16	7	3	0	0	0	0.73472	1	18439	18439		4.4062	0.28952	1	2301700			29716	12365	21345	21511	29072	29072					0.11529925345143965
LERRRRRSRCP	11	Unmodified	_LERRRRRSRCP_					0	0	0		ENST00000472073.1_1_22:19127492-19130053:-|nuORF	ENST00000472073.1_1_22:19127492-19130053:-|nuORF	ENST00000472073.1_1_22:19127492-19130053:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	495.619898	1483.83786	-0.55872	-0.00027691	-1.4044	-0.00069603	-1.9631	-0.00097294	495.6190501382388	51.02	0.40334	51.774	51.462	51.866	0.75406	-0.0086249	-5.761E-05	NaN	4.4062	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2394200			29717	12365	21345	21511							0.11529925345143965
LERSIVPSL	9	Unmodified	_LERSIVPSL_					0	0	0		nc|ENSG00000140367|Q8WVN8-3|UBE2Q2	nc|ENSG00000140367|Q8WVN8-3|UBE2Q2	nc|ENSG00000140367|Q8WVN8-3|UBE2Q2	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9801025390625	2	507.303124	1012.5917	-0.91186	-0.00046259	-1.9239	-0.00097599	-2.8357	-0.0014386	507.3019706775098	66.188	0.51129	66.926	66.629	67.14	0.73812					12	9	2	0	0	0	0.69507	1	25036	25036		19.257	8.4331	1	716140			29718	14639	21346	21512	29073	29073					0.08590315994376851
LERSLRRRRWF	11	Unmodified	_LERSLRRRRWF_					0	0	0		ENST00000533297.1_1_11:111896132-111933256:+|nuORF	ENST00000533297.1_1_11:111896132-111933256:+|nuORF	ENST00000533297.1_1_11:111896132-111933256:+|nuORF	MSMS	A375_MHC_IP_R1	1	525.66845703125	3	525.642809	1573.9066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.815	1	79.815	79.315	80.315	0								0	0	0	0.16269	1	29136	29136		4.7159	4.21	1				29719	13195	21347	21513	29074	29074					0.1425991291646369
LERSLRRRRWF	11	Unmodified	_LERSLRRRRWF_					0	0	0		ENST00000533297.1_1_11:111896132-111933256:+|nuORF	ENST00000533297.1_1_11:111896132-111933256:+|nuORF	ENST00000533297.1_1_11:111896132-111933256:+|nuORF	MSMS	A375_MHC_IP_R1	1	525.70263671875	3	525.642809	1573.9066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.516	1	82.516	82.016	83.016	0								0	0	0	0.16336	1	30175	30175		1.2148	1.12	1				29720	13195	21347	21513	29075	29075					0.1425991291646369
LERTHMKEC	9	Unmodified	_LERTHMKEC_					0	0	0		ENST00000437205.5_1_3:183639090-183689734:-|nuORF;nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5	ENST00000437205.5_1_3:183639090-183689734:-|nuORF	ENST00000437205.5_1_3:183639090-183689734:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	383.5924987792969	3	382.851326	1145.53215	-0.54337	-0.00020803	-4.0937	-0.0015673	-4.6371	-0.0017753	382.8497658254021	34.017	0.25363	34.769	34.6	34.853	0.75225					8	4	3	0	0	0	0.75466	1	12209	12209		2.4985	0	1	955890			29721	3244	21348	21514	29076	29076					-0.034796462829262964
LERVKKKLR	9	Unmodified	_LERVKKKLR_					0	0	0			REV__nc|ENSG00000019485|Q9NQV5-2|PRDM11	REV__nc|ENSG00000019485|Q9NQV5-2|PRDM11	MULTI-SECPEP	A375_MHC_IP_R1	1	1169.2720947265625	1	1169.78409	1168.77681	-0.41886	-0.00048998	-2.5799	-0.0030179	-2.9987	-0.0035079	1170.7841028379135	121.93	0.76156	121.93	121.41	122.18	0					20	14	3	0	0	0	0.80005	1	45413	45413		4.756	0	1	44808000	+		29722	16259	21349	21515	29077	29077					0.19917343584643277
LERVKSELL	9	Unmodified	_LERVKSELL_					0	0	0			REV__ENSG00000060709|ENST00000690449|RIMBP2	REV__ENSG00000060709|ENST00000690449|RIMBP2	MULTI-SECPEP	A375_MHC_IP_R1	1	544.2291259765625	2	543.829506	1085.64446	-0.92804	-0.0005047	-0.001682	-9.1471E-07	-0.92973	-0.00050561	543.8294048650789	67.634	0.55623	67.634	67.348	67.904	0					21	10	3	0	0	0	0.4465	1	24515	24515		31.268	2.1868	1	2618500	+		29723	16445	21350	21516	29078	29078					0.1050627405720661
LERVRRRRLR	10	Unmodified	_LERVRRRRLR_					0	0	0		ENSG00000090470|ENST00000204549|PDCD7	ENSG00000090470|ENST00000204549|PDCD7	ENSG00000090470|ENST00000204549|PDCD7	MSMS	A375_MHC_IP_R1	1	705.3550415039062	2	705.455459	1408.89637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.2	1	78.2	77.7	78.7	0								0	0	0	0.15629	1	28545	28545		0.40072	0	1				29724	1953	21351	21517	29079	29079					0.20827349981937004
LERVRRRRLRL	11	Unmodified	_LERVRRRRLRL_					0	0	0		ENSG00000090470|ENST00000204549|PDCD7	ENSG00000090470|ENST00000204549|PDCD7	ENSG00000090470|ENST00000204549|PDCD7	MSMS	A375_MHC_IP_R1	1	762.1494140625	2	761.997491	1521.98043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.94	1	124.94	124.44	125.44	0								0	0	0	0.16334	1	47294	47294		1.3295	1.3295	1				29725	1953	21352	21518	29080	29080					0.240318810788267
LERYASTF	8	Unmodified	_LERYASTF_					0	0	0		nc|ENSG00000215906|A8MY62|LACTBL1;ENSG00000215906|ENST00000426928|LACTBL1	nc|ENSG00000215906|A8MY62|LACTBL1	nc|ENSG00000215906|A8MY62|LACTBL1	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1502380371094	2	493.750724	985.486896	-0.90323	-0.00044597	0.050362	2.4866E-05	-0.85287	-0.00042111	493.75077282808945	59.287	0.75915	60.034	59.54	60.299	0.74714					24	14	3	0	0	0	0.60242	1	22410	22410		46.021	0	1	4214000			29726	9649	21353	21519	29081	29081					-0.00642805482186759
LERYKWLKIEF	11	Unmodified	_LERYKWLKIEF_					0	0	0		ENST00000395850.7_1_11:33731053-33731380:-|nuORF	ENST00000395850.7_1_11:33731053-33731380:-|nuORF	ENST00000395850.7_1_11:33731053-33731380:-|nuORF	MSMS	A375_MHC_IP_R2	2	762.8697509765625	2	762.932294	1523.85004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.038	1	96.789	96.289	97.289	0.75045								0	0	0	0.16309	1	36471	36471		5.7319	4.4023	1				29727	11478	21354	21520	29082	29082					0.10906427516579242
LESAKRLIL	9	Unmodified	_LESAKRLIL_					0	0	0			REV__ENSG00000105737|ENST00000593562|GRIK5	REV__ENSG00000105737|ENST00000593562|GRIK5	MULTI-SECPEP	A375_MHC_IP_R2	2	522.2341918945312	2	521.834591	1041.65463	-0.3767	-0.00019657	-0.24242	-0.0001265	-0.61912	-0.00032308	521.834388463949	95.214	0.6636	95.964	95.684	96.347	0.75045					30	12	3	0	0	0	0.49205	1	36175	36175		27.629	8.3718	1	4780400	+		29728	17407	21355	21521	29083	29083					0.13546881782417586
LESAMCRYY	9	Unmodified	_LESAMCRYY_					0	0	0			REV__ENSG00000133116|ENST00000380099|KL	REV__ENSG00000133116|ENST00000380099|KL	MSMS	A375_MHC_IP_R1	1	568.192626953125	2	568.249177	1134.4838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.409	1	73.409	72.909	73.909	0								0	0	0	0.15486	1	26728	26728		12.532	2.4576	1		+		29729	18707	21356	21522	29084	29084					-0.07806139922854527
LESDSFLKF	9	Unmodified	_LESDSFLKF_					0	0	0		SON-ITSN1|1|fusion;SON-ITSN1|3|fusion;SON-ITSN1|2|fusion;SON-ITSN1|4|fusion;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-5|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-8|SON	SON-ITSN1|1|fusion	SON-ITSN1|1|fusion	MULTI-SECPEP	A375_MHC_IP_R1	1	543.6795043945312	2	543.279315	1084.54408	-0.61294	-0.000333	-0.03238	-1.7592E-05	-0.64532	-0.00035059	543.2787194641603	93.966	0.70782	93.966	93.686	94.394	0					22	13	3	0	0	0	0.31976	1	34559	34559		63.961	34.879	1	1779600			29730	29217	21357	21523	29085	29085					0.005186170035358373
LESDSFLKF	9	Unmodified	_LESDSFLKF_					0	0	0		SON-ITSN1|1|fusion;SON-ITSN1|3|fusion;SON-ITSN1|2|fusion;SON-ITSN1|4|fusion;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-5|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-8|SON	SON-ITSN1|1|fusion	SON-ITSN1|1|fusion	MULTI-SECPEP	A375_MHC_IP_R2	2	543.68212890625	2	543.279315	1084.54408	-0.72757	-0.00039527	1.7371	0.00094374	1.0095	0.00054846	543.2800973462971	93.186	0.50768	93.925	93.596	94.104	0.73902					18	9	3	0	0	0	0.47206	1	35408	35408		41.956	18.807	1	2990300			29731	29217	21357	21523	29086	29086					0.005186170035358373
LESELAVQL	9	Unmodified	_LESELAVQL_					0	0	0		ENSG00000170037|ENST00000563694|CNTROB;nc|ENSG00000170037|Q8N137-3|CNTROB;nc|ENSG00000170037|Q8N137-2|CNTROB;ENST00000576922.5_1_17:7840526-7847657:+|nuORF;ENST00000571632.5_1_17:7838298-7849136:+|nuORF;ENST00000576723.5_1_17:7843028-7852016:+|nuORF;nc|ENSG00000170037|Q8N137-4|CNTROB;nc|ENSG00000170037|Q8N137-5|CNTROB	ENSG00000170037|ENST00000563694|CNTROB	ENSG00000170037|ENST00000563694|CNTROB	MULTI-MSMS	A375_MHC_IP_R2	2	501.72296142578125	2	501.279315	1000.54408	-0.539	-0.00027019	-0.05015	-2.5139E-05	-0.58915	-0.00029533	501.2792307033006	104.86	2.2387	105.62	104.7	106.94	0.76308					79	43	3	0	0	0	0.55818	1	39520	39520		16.942	0	1	32607000			29732	7465	21358	21524	29087	29087					0.04382617003534506
LESFIHVAVLD	11	Unmodified	_LESFIHVAVLD_					0	0	0		FRY|p.S805L|1|0.32|ENSG00000073910|chr13:32175625-32175625|C/T|missense_variant	FRY|p.S805L|1|0.32|ENSG00000073910|chr13:32175625-32175625|C/T|missense_variant	FRY|p.S805L|1|0.32|ENSG00000073910|chr13:32175625-32175625|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	415.2956848144531	3	414.895806	1241.66559	0.18818	7.8075E-05	-0.09749	-4.0448E-05	0.09069	3.7627E-05	414.89560014330675	95.084	0.40842	95.084	94.802	95.211	0					11	7	2	0	0	0	0.9754	1	34975	34975		13.519	2.6197	1	1848800			29733	14021	21359	21525	29088	29088					0.05442239366038848
LESFIHVAVLD	11	Unmodified	_LESFIHVAVLD_					0	0	0		FRY|p.S805L|1|0.32|ENSG00000073910|chr13:32175625-32175625|C/T|missense_variant	FRY|p.S805L|1|0.32|ENSG00000073910|chr13:32175625-32175625|C/T|missense_variant	FRY|p.S805L|1|0.32|ENSG00000073910|chr13:32175625-32175625|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	415.2955627441406	3	414.895806	1241.66559	0.17736	7.3585E-05	-0.11978	-4.9694E-05	0.057583	2.3891E-05	414.8957206369045	94.029	0.45425	94.774	94.566	95.02	0.74474					18	8	3	0	0	0	0.84606	1	35755	35755		17.049	4.8738	1	1831200			29734	14021	21359	21525	29089	29089					0.05442239366038848
LESFMDQDRI	10	Unmodified	_LESFMDQDRI_					0	0	0		ENSG00000280236|ENST00000642051|OR12D2	ENSG00000280236|ENST00000642051|OR12D2	ENSG00000280236|ENST00000642051|OR12D2	MULTI-SECPEP	A375_MHC_IP_R2	2	626.6925048828125	2	627.29517	1252.57579	-0.71822	-0.00045054	-2.3326	-0.0014632	-3.0508	-0.0019138	627.2947096931433	69.037	0.659	69.772	69.525	70.184	0.73511					18	12	2	0	0	0	0.87163	1	26138	26138		5.7319	3.2334	1	1884900			29735	10046	21360	21526	29090	29090					-0.0403975830483887
LESFYKEN	8	Unmodified	_LESFYKEN_					0	0	0			REV__ENSG00000204764|ENST00000523189|RANBP17	REV__ENSG00000204764|ENST00000523189|RANBP17	MULTI-MSMS	A375_MHC_IP_R1	1	515.1552734375	2	515.248015	1028.48148	-0.65432	-0.00033714	1.8618	0.00095927	1.2074	0.00062213	515.2490371573679	65.586	0.40828	65.586	65.411	65.819	0					12	7	2	0	0	0	0.76654	1	23831	23831		15.847	2.8047	1	1011400	+		29736	22539	21361	21527	29091	29091					-0.03162529064638875
LESGHDYLL	9	Unmodified	_LESGHDYLL_					0	0	0		ENSG00000121904|ENST00000373381|CSMD2;nc|ENSG00000121904|Q7Z408|CSMD2	ENSG00000121904|ENST00000373381|CSMD2	ENSG00000121904|ENST00000373381|CSMD2	MULTI-SECPEP	A375_MHC_IP_R2	2	524.1298217773438	2	523.761289	1045.50803	-0.49047	-0.00025689	-3.231	-0.0016923	-3.7215	-0.0019492	523.7608495883558	63.239	0.60944	63.981	63.633	64.243	0.74179					14	11	2	0	0	0	0.52144	1	24053	24053		23.148	0	1	773910			29737	3748	21362	21528	29092	29092					-0.01290840173351171
LESGLSKEALI	11	Unmodified	_LESGLSKEALI_					0	0	0		nc|ENSG00000135100|P20823-2|HNF1A;nc|ENSG00000135100|P20823-8|HNF1A;nc|ENSG00000135100|P20823-5|HNF1A;nc|ENSG00000135100|P20823-4|HNF1A;nc|ENSG00000135100|P20823-3|HNF1A;nc|ENSG00000135100|P20823|HNF1A;ENSG00000135100|ENST00000257555|HNF1A;nc|ENSG00000135100|P20823-7|HNF1A	nc|ENSG00000135100|P20823-2|HNF1A	nc|ENSG00000135100|P20823-2|HNF1A	MULTI-MSMS	A375_MHC_IP_R1	1	387.6241760253906	3	387.223811	1158.6496	0.74293	0.00028768	0.53724	0.00020803	1.2802	0.00049571	387.2239899333509	45.012	0.65651	45.012	44.827	45.484	0					23	12	4	0	0	0	0.72713	1	15748	15748		11.631	0.73241	1	6482400			29738	14615	21363	21529	29093	29093					0.07662533129155236
LESIYQRDPLK	11	Unmodified	_LESIYQRDPLK_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	MSMS	A375_MHC_IP_R2	2	681.6287841796875	2	681.374809	1360.73507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.334	1	86.07	85.57	86.57	0.73601								0	0	0	0.16302	1	32440	32440		2.9952	0	1				29739	7128	21364	21530	29094	29094					0.06912698314795307
LESKEEQLTNV	11	Unmodified	_LESKEEQLTNV_					0	0	0			REV__nc|ENSG00000112365|O43167-2|ZBTB24	REV__nc|ENSG00000112365|O43167-2|ZBTB24	MULTI-MSMS	A375_MHC_IP_R1	1	645.7327880859375	2	645.332807	1288.65106	-0.55633	-0.00035902	0.062829	4.0545E-05	-0.4935	-0.00031847	645.3328102062599	28.897	0.30194	28.897	28.694	28.996	0					13	5	3	0	0	0	0.15207	1	8981	8981		61.09	5.8553	1	2766700	+		29740	17728	21365	21531	29095	29095					0.018281224272413965
LESKEEQLTNV	11	Unmodified	_LESKEEQLTNV_					0	0	0			REV__nc|ENSG00000112365|O43167-2|ZBTB24	REV__nc|ENSG00000112365|O43167-2|ZBTB24	MULTI-MSMS	A375_MHC_IP_R2	2	645.7323608398438	2	645.332807	1288.65106	-0.97112	-0.00062669	0.048228	3.1123E-05	-0.92289	-0.00059557	645.3328922044745	28.232	0.30344	28.911	28.757	29.06	0.67857					12	5	3	0	0	0	0.28721	1	9764	9764		47.732	3.9596	1	3992200	+		29741	17728	21365	21531	29096	29096					0.018281224272413965
LESKEEQLTNV	11	Unmodified	_LESKEEQLTNV_					0	0	0			REV__nc|ENSG00000112365|O43167-2|ZBTB24	REV__nc|ENSG00000112365|O43167-2|ZBTB24	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	645.332807	1288.65106	-0.55633	-0.00035902	0.062829	4.0545E-05	-0.4935	-0.00031847	645.3328102062599	28.897	0.30194	28.897	28.694	28.996	0	-0.0069354	9.5472E-06	NaN	61.09	13	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2766700	+		29742	17728	21365	21531							0.018281224272413965
LESKEQNL	8	Unmodified	_LESKEQNL_					0	0	0			REV__RAD50|p.K596Efs*12|1|0.13|ENSG00000113522|chr5:132592026-132592027|-/GAGAAACAACTCAAGAGGGAGAAATATAT|frameshift_variant	REV__RAD50|p.K596Efs*12|1|0.13|ENSG00000113522|chr5:132592026-132592027|-/GAGAAACAACTCAAGAGGGAGAAATATAT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	480.6740417480469	2	480.753464	959.492375	-0.70754	-0.00034015	0.15655	7.526E-05	-0.55099	-0.00026489	480.75360057475535	67.271	0.51034	67.271	66.99	67.5	0					16	9	2	0	0	0	0.64636	1	24395	24395		34.102	0	1	1871400	+		29743	17783	21366	21532	29097	29097					0.011008733096218748
LESKWVVY	8	Unmodified	_LESKWVVY_					0	0	0			REV__nc|ENSG00000047648|O43182-3|ARHGAP6	REV__nc|ENSG00000047648|O43182-3|ARHGAP6	MULTI-SECPEP	A375_MHC_IP_R2	2	512.6783447265625	2	512.279118	1022.54368	-0.9018	-0.00046197	-0.91648	-0.00046949	-1.8183	-0.00093147	512.2787761778815	55.066	1.0179	55.817	55.37	56.388	0.75075					25	19	2	0	0	0	0.84748	1	20967	20967		28.487	16.246	1	2509400	+		29744	27098	21367	21533	29098	29098					0.03331242074330021
LESLDSNLSL	10	Unmodified	_LESLDSNLSL_					0	0	0		NPAS4|p.P667S|1|0.36|ENSG00000174576|chr11:66424889-66424889|C/T|missense_variant	NPAS4|p.P667S|1|0.36|ENSG00000174576|chr11:66424889-66424889|C/T|missense_variant	NPAS4|p.P667S|1|0.36|ENSG00000174576|chr11:66424889-66424889|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	364.5922546386719	3	364.1924	1089.55537	-0.32092	-0.00011688	-0.38511	-0.00014025	-0.70603	-0.00025713	364.1923100902213	23.509	0.50541	24.139	23.828	24.333	0.63014					14	9	3	0	0	0	0.77204	1	7596	7596		23.801	6.3584	1	7524800			29745	15018	21368	21534	29099	29099					0.0141739430700909
LESLEVLIGE	10	Unmodified	_LESLEVLIGE_					0	0	0			REV__tr|U7T277|U7T277_FUSNUPTSsystem,fructose-specificIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00577PE=4SV=1	REV__tr|U7T277|U7T277_FUSNUPTSsystem,fructose-specificIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00577PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	367.6326599121094	3	367.872778	1100.59651	0.18077	6.6501E-05	0.27285	0.00010038	0.45363	0.00016688	367.8728365769456	27.406	0.50553	27.406	27.28	27.786	0					16	9	2	0	0	0	0.8125	1	8426	8426		11.518	0.02317	1	2498200	+		29746	28725	21369	21535	29100	29100					0.05023155346475505
LESLPPEVLSI	11	Unmodified	_LESLPPEVLSI_					0	0	0		ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	MULTI-MSMS	A375_MHC_IP_R1	1	399.96392822265625	3	399.563945	1195.67001	-0.12072	-4.8237E-05	0.66926	0.00026741	0.54854	0.00021918	399.5640583415759	53.743	1.0128	53.743	53.403	54.415	0					44	19	5	0	0	0	0.7039	1	19144	19144		12.228	3.4758	1	7823300			29747	8163	21370	21536	29101	29101					0.07999703788982515
LESLQKQLN	9	Unmodified	_LESLQKQLN_					0	0	0			REV__ENSG00000133424|ENST00000397394|LARGE1	REV__ENSG00000133424|ENST00000397394|LARGE1	MULTI-SECPEP	A375_MHC_IP_R1	1	536.7241821289062	2	536.803488	1071.59242	-0.27472	-0.00014747	1.2384	0.00066479	0.96371	0.00051732	536.8040472443686	69.658	1.6786	69.658	69.07	70.749	0					47	28	3	0	0	0	0.16676	1	25639	25639		58.679	12.658	1	2662600	+		29748	18719	21371	21537	29102	29102					0.059491106434506946
LESLQRLFDQ	10	Unmodified	_LESLQRLFDQ_					0	0	0		nc|ENSG00000168918|Q92835-3|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D	nc|ENSG00000168918|Q92835-3|INPP5D	nc|ENSG00000168918|Q92835-3|INPP5D	MSMS	A375_MHC_IP_R1	1	624.7583618164062	2	624.832777	1247.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.858	1	66.858	66.358	67.358	0								0	0	0	0.15265	1	24223	24223		12.241	0.74595	1				29749	7360	21372	21538	29103	29103					0.03708167217928349
LESLQTQKF	9	Unmodified	_LESLQTQKF_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6973266601562	2	547.298039	1092.58152	-0.55765	-0.0003052	1.0933	0.00059836	0.53565	0.00029316	547.2977312140288	46.352	0.50215	46.352	46.094	46.596	0					18	9	3	0	0	0	0.11751	1	16283	16283		90.135	48.04	1	2084800			29750	2654	21373	21539	29104	29104					0.0389370826915183
LESLQTQKF	9	Unmodified	_LESLQTQKF_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-MATCH	A375_MHC_IP_R2	2		2	547.298039	1092.58152	-0.80473	-0.00044043	0.58276	0.00031894	-0.22198	-0.00012149	547.298300431971	45.529	0.45255	46.294	46.15	46.603	0.76519	-0.028849	-5.6204E-05	NaN	90.135	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1307700			29751	2654	21373	21539							0.0389370826915183
LESLRGVLSSP	11	Unmodified	_LESLRGVLSSP_					0	0	0		ENST00000470962.1_1_17:29281459-29284884:+|nuORF;ENST00000480980.1_1_17:29281459-29283585:+|nuORF;nc|ENSG00000184060|Q9NPF8-2|ADAP2;ENSG00000184060|ENST00000330889|ADAP2	ENST00000470962.1_1_17:29281459-29284884:+|nuORF	ENST00000470962.1_1_17:29281459-29284884:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	386.9568176269531	3	386.555672	1156.64519	-0.16201	-6.2626E-05	0.44462	0.00017187	0.28261	0.00010925	386.89016331734445	31.537	0.71069	32.256	32.026	32.736	0.71857					49	13	6	0	0	0	0.98524	1	11175	11175		5.8681	0	1	4326800			29752	8548	21374	21540	29105	29105					0.07313068706253034
LESNEWSPY	9	Unmodified	_LESNEWSPY_					0	0	0		ENSG00000116679|ENST00000367498|IVNS1ABP;ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF	ENSG00000116679|ENST00000367498|IVNS1ABP	ENSG00000116679|ENST00000367498|IVNS1ABP	MULTI-MSMS	A375_MHC_IP_R1	1	562.6724853515625	2	562.748379	1123.4822	-0.71048	-0.00039982	0.46583	0.00026214	-0.24465	-0.00013768	562.7483244028224	41.686	0.51234	41.686	41.419	41.932	0					20	9	3	0	0	0	0.17328	1	14437	14437		39.957	3.8303	1	2414000			29753	3416	21375	21541	29106	29106					-0.07459734415601815
LESNEWSPY	9	Unmodified	_LESNEWSPY_					0	0	0		ENSG00000116679|ENST00000367498|IVNS1ABP;ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF	ENSG00000116679|ENST00000367498|IVNS1ABP	ENSG00000116679|ENST00000367498|IVNS1ABP	MULTI-MSMS	A375_MHC_IP_R2	2	562.6721801757812	2	562.748379	1123.4822	-0.79842	-0.00044931	0.43313	0.00024374	-0.36528	-0.00020556	562.7483200044364	40.981	0.60963	41.755	41.438	42.047	0.77451					16	11	2	0	0	0	0.17328	1	15179	15179		39.957	3.8303	1	1891100			29754	3416	21375	21541	29107	29107					-0.07459734415601815
LESPGHDLIY	10	Unmodified	_LESPGHDLIY_					0	0	0			REV__ENSG00000157680|ENST00000614521|DGKI;REV__nc|ENSG00000157680|O75912|DGKI	REV__ENSG00000157680|ENST00000614521|DGKI	MULTI-MSMS	A375_MHC_IP_R1	1	572.71630859375	2	572.287671	1142.56079	-0.16349	-9.3564E-05	1.432	0.00081953	1.2685	0.00072597	572.7901258499204	56.746	0.61107	56.746	56.548	57.159	0					19	11	3	0	0	0	0.33603	1	20364	20364		37.974	5.1883	1	1813700	+		29755	20039;27309	21376	21542	29108	29108					-0.004788821105194074
LESPGPERVW	10	Unmodified	_LESPGPERVW_					0	0	0		ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	MULTI-SECPEP	A375_MHC_IP_R1	1	585.7434692382812	2	585.301113	1168.58767	-0.32614	-0.00019089	0.43002	0.00025169	0.10387	6.0798E-05	585.3016185954451	58.811	0.45901	58.811	58.582	59.041	0					12	8	2	0	0	0	0.75488	1	21067	21067		29.841	9.387	1	2086900			29756	4145	21377	21543	29109	29109					0.010122265006430098
LESQRLIY	8	Unmodified	_LESQRLIY_					0	0	0			REV__ENST00000513495.5_1_4:8233802-8237300:+|nuORF	REV__ENST00000513495.5_1_4:8233802-8237300:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	511.4777526855469	2	511.287474	1020.5604	-0.66637	-0.00034071	0.064526	3.2992E-05	-0.60184	-0.00030771	511.28750798425136	86.198	0.60655	86.198	85.87	86.477	0					19	11	2	0	0	0	0.74945	1	31558	31558		20.454	0	1	3738200	+		29757	18328	21378	21544	29110	29110					0.05093742960286818
LESQRLIY	8	Unmodified	_LESQRLIY_					0	0	0			REV__ENST00000513495.5_1_4:8233802-8237300:+|nuORF	REV__ENST00000513495.5_1_4:8233802-8237300:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	511.6872863769531	2	511.287474	1020.5604	-0.66637	-0.00034071	0.064526	3.2992E-05	-0.60184	-0.00030771	511.28750798425136	86.198	0.60655	86.198	85.87	86.477	0					19	11	2	0	0	0	0.94587	1	31572	31572		20.454	0	1	3738200	+		29758	18328	21378	21544	29111	29111					0.05093742960286818
LESREEYM	8	Unmodified	_LESREEYM_					0	0	0		nc|ENSG00000126545|P47710-4|CSN1S1;nc|ENSG00000126545|P47710-3|CSN1S1;nc|ENSG00000126545|P47710-2|CSN1S1;ENSG00000126545|ENST00000246891|CSN1S1	nc|ENSG00000126545|P47710-4|CSN1S1	nc|ENSG00000126545|P47710-4|CSN1S1	MSMS	A375_MHC_IP_R1	1	528.6716918945312	2	528.736957	1055.45936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.487	1	38.487	37.987	38.987	0								0	0	0	0.16876	1	13061	13061		13.508	0.97634	1				29759	4047	21379	21545	29112	29112					-0.06615076804746423
LESRHAFSKG	10	Unmodified	_LESRHAFSKG_					0	0	0			REV__nc|ENSG00000059573|P54886-2|ALDH18A1	REV__nc|ENSG00000059573|P54886-2|ALDH18A1	MULTI-SECPEP	A375_MHC_IP_R2	2	378.2680358886719	3	377.868362	1130.58326	-0.28305	-0.00010696	-0.3137	-0.00011854	-0.59675	-0.00022549	377.8682930066386	25.307	0.40698	25.95	25.822	26.229	0.64368					10	7	2	0	0	0	0.81532	1	8480	8480		9.2438	0.26753	1	2954500	+		29760	16440	21380	21546	29113	29113					0.023187620777662232
LESRIQEWYEF	11	Unmodified	_LESRIQEWYEF_					0	0	0		nc|ENSG00000126337|O76013-2|KRT36;ENSG00000126337|ENST00000328119|KRT36;CON__O76013	nc|ENSG00000126337|O76013-2|KRT36	nc|ENSG00000126337|O76013-2|KRT36	MSMS	A375_MHC_IP_R1	1	500.474609375	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.061	1	82.061	81.561	82.561	0								0	0	0	0.16312	1	29998	29998		1.0136	0.50762	1			+	29761	575	21381	21547	29114	29114					-0.020161959274446417
LESRIQEWYEF	11	Unmodified	_LESRIQEWYEF_					0	0	0		nc|ENSG00000126337|O76013-2|KRT36;ENSG00000126337|ENST00000328119|KRT36;CON__O76013	nc|ENSG00000126337|O76013-2|KRT36	nc|ENSG00000126337|O76013-2|KRT36	MSMS	A375_MHC_IP_R2	2	500.4745788574219	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.881	1	72.615	72.115	73.115	0.73421								0	0	0	0.16297	1	27275	27275		1.3296	0.31607	1			+	29762	575	21381	21547	29115	29115					-0.020161959274446417
LESRQRSL	8	Unmodified	_LESRQRSL_					0	0	0		ENSG00000068323|ENST00000315869|TFE3;TFE3|p.A419T|1|0.82|ENSG00000068323|chrX:49031426-49031426|C/T|missense_variant	ENSG00000068323|ENST00000315869|TFE3	ENSG00000068323|ENST00000315869|TFE3	MSMS	A375_MHC_IP_R2	2	494.56317138671875	2	494.780348	987.546142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.967	1	76.707	76.207	77.207	0.74052								0	0	0	0.16876	1	28838	28838		14.582	0	1				29763	1456	21382	21548	29116	29116					0.05187090532012917
LESRTFDMN	9	Unmodified	_LESRTFDMN_					0	0	0		ENST00000370680.5_1_1:84668465-84670195:+|nuORF	ENST00000370680.5_1_1:84668465-84670195:+|nuORF	ENST00000370680.5_1_1:84668465-84670195:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	556.7142333984375	2	556.755681	1111.49681	-0.52494	-0.00029226	-4.4901	-0.0024999	-5.0151	-0.0027922	556.7525050598498	94.758	0.30332	95.503	95.224	95.528	0.74474					7	5	2	0	0	0	0.60101	1	35994	35994		14.838	1.3304	1	570020			29764	11154	21383	21549	29117	29117					-0.054479855391036835
LESSCRRY	8	Unmodified	_LESSCRRY_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-2|PRR14L	REV__nc|ENSG00000183530|Q5THK1-2|PRR14L	MULTI-SECPEP	A375_MHC_IP_R1	1	507.98040771484375	2	507.245283	1012.47601	-0.39447	-0.0002001	0.86941	0.000441	0.47494	0.00024091	507.2456409936843	61.632	0.56042	61.632	61.331	61.891	0					22	10	3	0	0	0	0.91495	1	22194	22194		12.532	0	1	6252700	+		29765	21762	21384	21550	29118	29118					-0.02972531128114042
LESSLISLSRY	11	Unmodified	_LESSLISLSRY_					0	0	0		AMBRA1|p.H985Qfs*7|1|0.15|ENSG00000110497|chr11:46433495-46433495|A/-|frameshift_variant;nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1;ENST00000529558.1_1_11:46526218-46534359:-|nuORF	AMBRA1|p.H985Qfs*7|1|0.15|ENSG00000110497|chr11:46433495-46433495|A/-|frameshift_variant	AMBRA1|p.H985Qfs*7|1|0.15|ENSG00000110497|chr11:46433495-46433495|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	635.064453125	2	634.34826	1266.68197	-0.6991	-0.00044347	1.6909	0.0010726	0.99185	0.00062918	634.3503025852254	91.412	0.15085	92.147	92.021	92.172	0.7345					4	2	2	0	0	0	0.9754	1	34771	34771		12.241	0	1	745550			29766	122	21385	21551	29119	29119					0.05929320532163729
LESSLQTYNP	10	Unmodified	_LESSLQTYNP_					0	0	0		ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	MULTI-SECPEP	A375_MHC_IP_R1	1	576.6827392578125	2	576.282586	1150.55062	-0.12626	-7.276E-05	0.44158	0.00025447	0.31532	0.00018171	576.2828085765995	52.161	0.5591	52.161	51.879	52.438	0					19	10	2	0	0	0	0.1039	1	18520	18520		47.594	24.936	1	10866000			29767	6921	21386	21552	29120	29120					-0.018634898357504426
LESSLQTYNP	10	Unmodified	_LESSLQTYNP_					0	0	0		ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	MULTI-MSMS	A375_MHC_IP_R2	2	576.6824340820312	2	576.282586	1150.55062	-0.40346	-0.00023251	-2.3106	-0.0013316	-2.7141	-0.0015641	576.2823044145636	51.602	0.76278	52.354	51.966	52.729	0.75225					45	14	5	0	0	0	0.17879	1	19347	19347		51.415	5.7156	1	8730300			29768	6921	21386	21552	29121	29121					-0.018634898357504426
LESTIAHEIY	10	Unmodified	_LESTIAHEIY_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant;nc|ENSG00000066279|Q8IZT6-2|ASPM;ASPM|p.V2172Sfs*9|1|0.47|ENSG00000066279|chr1:197102741-197102741|A/-|frameshift_variant;ASPM|p.L1368*|1|0.77|ENSG00000066279|chr1:197105149-197105149|G/-|frameshift_variant	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	A375_MHC_IP_R1	1	588.69921875	2	588.300778	1174.587	-0.75652	-0.00044506	-1.7349	-0.0010207	-2.4915	-0.0014657	588.8008395437013	29.378	0.25206	29.378	29.201	29.453	0					10	4	3	0	0	0	0.60556	1	9206	9206		20.454	1.1966	1	7149300			29769	1407	21387	21553	29122	29122					0.006693870609751684
LESTNSCKTF	10	Unmodified	_LESTNSCKTF_					0	0	0			REV__nc|ENSG00000012048|P38398-8|BRCA1	REV__nc|ENSG00000012048|P38398-8|BRCA1	MULTI-MSMS	A375_MHC_IP_R2	2	566.170654296875	2	565.263339	1128.51212	-0.764	-0.00043186	-0.38494	-0.00021759	-1.1489	-0.00064945	565.2632080921743	38.756	0.76486	39.53	39.149	39.914	0.77451					29	14	3	0	0	0	0.57505	1	14193	14193		22.736	1.1993	1	17332000	+		29770	16218	21388	21554	29123	29123					-0.04699118741928032
LESVDWDLY	9	Unmodified	_LESVDWDLY_					0	0	0			REV__ENST00000552687.6_1_12:56332455-56333318:+|nuORF	REV__ENST00000552687.6_1_12:56332455-56333318:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	570.1498413085938	2	570.266404	1138.51826	-0.11192	-6.3823E-05	0.093888	5.3541E-05	-0.018029	-1.0281E-05	570.2664743034871	100.34	1.1766	101.11	100.63	101.8	0.76278					40	22	3	0	0	0	0.63811	1	38158	38158		12.532	0.89125	1	2808800	+		29771	16495	21389	21555	29124	29124					-0.045462772387509176
LESVVQERF	9	Unmodified	_LESVVQERF_					0	0	0		ENST00000489436.1_1_1:145595040-145598553:-|nuORF;ENSG00000186141|ENST00000334163|POLR3C	ENST00000489436.1_1_1:145595040-145598553:-|nuORF	ENST00000489436.1_1_1:145595040-145598553:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	553.6510620117188	2	553.795663	1105.57677	-0.47686	-0.00026408	0.054099	2.996E-05	-0.42276	-0.00023412	553.7956530591207	55.815	0.81297	55.815	55.482	56.295	0					27	15	2	0	0	0	0.036647	1	19953	19953		103.42	36.963	1	8321300			29772	8723	21390	21556	29125	29125					0.028208241263882883
LESVVQERF	9	Unmodified	_LESVVQERF_					0	0	0		ENST00000489436.1_1_1:145595040-145598553:-|nuORF;ENSG00000186141|ENST00000334163|POLR3C	ENST00000489436.1_1_1:145595040-145598553:-|nuORF	ENST00000489436.1_1_1:145595040-145598553:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	554.1954345703125	2	553.795663	1105.57677	-0.90665	-0.0005021	0.092093	5.1001E-05	-0.81456	-0.0004511	553.7957193076368	55.003	0.71381	55.754	55.523	56.237	0.75075					25	13	2	0	0	0	0.012447	1	20754	20754		93.166	13.57	1	9711900			29773	8723	21390	21556	29126	29126					0.028208241263882883
LESYAYSLKN	10	Unmodified	_LESYAYSLKN_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-SECPEP	A375_MHC_IP_R1	1	593.8967895507812	2	594.300778	1186.587	-0.61218	-0.00036382	1.0034	0.0005963	0.39118	0.00023248	594.3013905621477	90.956	0.86203	90.956	90.437	91.299	0					33	16	3	0	0	0	0.93005	1	33240	33240		7.1017	2.2047	1	7403500			29774	1188	21391	21557	29127	29127					0.001173870609363803
LESYKKYI	8	Unmodified	_LESYKKYI_					0	0	0		nc|ENSG00000141030|Q9UNS2-2|COPS3;ENSG00000141030|ENST00000268717|COPS3	nc|ENSG00000141030|Q9UNS2-2|COPS3	nc|ENSG00000141030|Q9UNS2-2|COPS3	MULTI-SECPEP	A375_MHC_IP_R1	1	522.6448974609375	2	522.292225	1042.5699	-0.49165	-0.00025679	1.5273	0.00079768	1.0356	0.00054089	522.7952399225848	87.813	0.61209	87.813	87.593	88.205	0					16	11	2	0	0	0	0.972	1	32269	32269		2.3027	0	1	2075900			29775	5210	21392	21558	29128	29128					0.050315112458065414
LESYNQYF	8	Unmodified	_LESYNQYF_					0	0	0			REV__ITGB3|p.L343F|1|0.26|ENSG00000259207|chr17:47289768-47289768|C/T|missense_variant	REV__ITGB3|p.L343F|1|0.26|ENSG00000259207|chr17:47289768-47289768|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	531.690673828125	2	532.24019	1062.46583	-0.55356	-0.00029463	1.4291	0.00076064	0.87557	0.00046602	532.2411087654685	93.537	0.45912	93.537	93.329	93.789	0					12	8	2	0	0	0	0.972	1	34326	34326		10.183	4.423	1	539800	+		29776	26806	21393	21559	29129	29129					-0.06290815581701281
LETAHNFLL	9	Unmodified	_LETAHNFLL_					0	0	0		ENST00000409162.1_1_2:238333864-238333903:-|nuORF	ENST00000409162.1_1_2:238333864-238333903:-|nuORF	ENST00000409162.1_1_2:238333864-238333903:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	528.6390380859375	2	529.287474	1056.5604	-0.75438	-0.00039928	-0.7952	-0.00042089	-1.5496	-0.00082017	529.287712565901	84.913	0.66487	84.913	84.442	85.107	0					14	12	2	0	0	0	0.60917	1	31029	31029		13.906	0	1	1241900			29777	11622	21394	21560	29130	29130					0.03437742960295509
LETAYRRGCL	10	Unmodified	_LETAYRRGCL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-SECPEP	A375_MHC_IP_R2	2	393.9439392089844	3	394.541369	1180.60228	-0.37992	-0.00014989	0.010187	4.0194E-06	-0.36973	-0.00014587	394.54128187357514	28.191	0.40594	28.869	28.604	29.01	0.67857					12	7	2	0	0	0	0.91556	1	9611	9611		5.7834	0	1	1569900			29778	9935	21395	21561	29131	29131					0.01919975377177252
LETDLYKRF	9	Unmodified	_LETDLYKRF_					0	0	0		ENST00000509268.1_1_5:82400738-82554497:+|nuORF;nc|ENSG00000152422|Q13426-3|XRCC4;ENST00000542685.5_1_5:82400738-82606644:+|nuORF;ENSG00000152422|ENST00000396027|XRCC4;nc|ENSG00000152422|Q13426|XRCC4	ENST00000509268.1_1_5:82400738-82554497:+|nuORF	ENST00000509268.1_1_5:82400738-82554497:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	396.164794921875	3	395.548518	1183.62372	-0.055715	-2.2038E-05	-0.50601	-0.00020015	-0.56173	-0.00022219	395.54839955748633	55.202	0.30364	55.202	54.975	55.279	0					11	5	3	0	0	0	0.73363	1	19684	19684		0.77653	0.50751	1	1355000			29779	5964	21396	21562	29132	29132					0.039256836774939075
LETEYIHD	8	Unmodified	_LETEYIHD_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	A375_MHC_IP_R2	2	509.6291809082031	2	510.237647	1018.46074	-1.0397	-0.00053048	-0.017043	-8.6961E-06	-1.0567	-0.00053918	510.23747747176344	49.519	0.6573	50.276	49.894	50.551	0.75737					27	12	3	0	0	0	0.77123	2	18630	18630;18670		14.582	2.0501	1	11071000			29780	4099;14587	21397	21563	29133;29134	29133					-0.047751194443321765
LETEYKVRL	9	Unmodified	_LETEYKVRL_					0	0	0			REV__ENST00000427733.1_1_13:90882929-90883235:+|nuORF	REV__ENST00000427733.1_1_13:90882929-90883235:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	575.1626586914062	2	575.826963	1149.63937	-0.11916	-6.8615E-05	3.2998	0.0019001	3.1807	0.0018315	576.330329437991	88.405	0.20222	89.137	88.976	89.178	0.7318					6	3	2	0	0	0	0.61452	1	33651	33651		21.747	2.4897	1	834170	+		29781	24670	21398	21564	29135	29135					0.07053970194579051
LETFNFGDRSI	11	Unmodified	_LETFNFGDRSI_					0	0	0			REV__ENSG00000112303|ENST00000326499|VNN2	REV__ENSG00000112303|ENST00000326499|VNN2	MULTI-SECPEP	A375_MHC_IP_R1	1	650.203857421875	2	649.822409	1297.63027	-0.54085	-0.00035146	0.1743	0.00011326	-0.36656	-0.0002382	649.8222260200464	84.333	0.35294	84.333	84.141	84.494	0					12	6	3	0	0	0	0.98591	1	30948	30948		5.7319	0	1	1934500	+		29782	17725	21399	21565	29136	29136					-0.00664423161765626
LETHWMFL	8	Unmodified	_LETHWMFL_					0	0	0		ENST00000515090.5_1_4:176594985-176622825:-|nuORF	ENST00000515090.5_1_4:176594985-176622825:-|nuORF	ENST00000515090.5_1_4:176594985-176622825:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	539.1654052734375	2	538.76532	1075.51609	-0.8869	-0.00047783	1.4172	0.00076353	0.53029	0.0002857	538.7659352326655	130.54	0.20389	130.54	130.46	130.67	0					6	3	2	0	0	0	0.77123	1	50283	50283		14.582	14.582	1	22401000			29783	12945	21400	21566	29137	29137					-0.018649844575520547
LETHWMFL	8	Unmodified	_LETHWMFL_					0	0	0		ENST00000515090.5_1_4:176594985-176622825:-|nuORF	ENST00000515090.5_1_4:176594985-176622825:-|nuORF	ENST00000515090.5_1_4:176594985-176622825:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	538.76532	1075.51609	-0.8869	-0.00047783	1.4172	0.00076353	0.53029	0.0002857	538.7659352326655	130.54	0.20389	130.54	130.46	130.67	0	-0.018345	-0.00065614	NaN	14.582	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22401000			29784	12945	21400	21566							-0.018649844575520547
LETHWMFL	8	Unmodified	_LETHWMFL_					0	0	0		ENST00000515090.5_1_4:176594985-176622825:-|nuORF	ENST00000515090.5_1_4:176594985-176622825:-|nuORF	ENST00000515090.5_1_4:176594985-176622825:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	538.76532	1075.51609	-0.87322	-0.00047046	2.2555	0.0012152	1.3823	0.00074473	538.7664296022433	130.36	0.20261	130.58	130.45	130.65	0.2142	0.018345	0.00024718	NaN	14.582	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23068000			29785	12945	21400	21566							-0.018649844575520547
LETIFYSSYVF	11	Unmodified	_LETIFYSSYVF_					0	0	0		ENST00000469562.1_1_2:24246405-24248323:+|nuORF;ENSG00000205639|ENST00000338315|MFSD2B	ENST00000469562.1_1_2:24246405-24248323:+|nuORF	ENST00000469562.1_1_2:24246405-24248323:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	457.1788635253906	3	456.895583	1367.66492	-0.42913	-0.00019607	1.0468	0.00047826	0.61764	0.0002822	456.8961780229723	49.021	0.56092	49.778	49.485	50.046	0.75736					20	10	3	0	0	0	0.73332	1	18315	18315		2.6312	0.19645	1	2099300			29786	9521	21401	21567	29138	29138					-0.004206000736758142
LETIFYSSYVF	11	Unmodified	_LETIFYSSYVF_					0	0	0		ENST00000469562.1_1_2:24246405-24248323:+|nuORF;ENSG00000205639|ENST00000338315|MFSD2B	ENST00000469562.1_1_2:24246405-24248323:+|nuORF	ENST00000469562.1_1_2:24246405-24248323:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	456.895583	1367.66492	-0.42913	-0.00019607	1.0468	0.00047826	0.61764	0.0002822	456.8961780229723	49.021	0.56092	49.778	49.485	50.046	0.75736	-0.085005	8.5478E-05	NaN	2.6312	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2099300			29787	9521	21401	21567							-0.004206000736758142
LETIRDDCY	9	Unmodified	_LETIRDDCY_					0	0	0			REV__ENSG00000116016|ENST00000263734|EPAS1	REV__ENSG00000116016|ENST00000263734|EPAS1	MSMS	A375_MHC_IP_R2	2	564.1841430664062	2	564.255514	1126.49647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.54	1	112.27	111.77	112.77	0.72726								0	0	0	0.14677	1	42055	42055		26.884	4.1474	1		+		29788	17932	21402	21568	29139	29139					-0.06171405258965024
LETIRDDCY	9	Unmodified	_LETIRDDCY_					0	0	0			REV__ENSG00000116016|ENST00000263734|EPAS1	REV__ENSG00000116016|ENST00000263734|EPAS1	MSMS	A375_MHC_IP_R2	2	564.3218994140625	2	564.255514	1126.49647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.29	1	113.02	112.52	113.52	0.72458								0	0	0	0.1499	1	42333	42333		21.747	2.4897	1		+		29789	17932	21402	21568	29140	29140					-0.06171405258965024
LETLEVHFMY	10	Unmodified	_LETLEVHFMY_					0	0	0			REV__ENSG00000148110|ENST00000375344|MFSD14B	REV__ENSG00000148110|ENST00000375344|MFSD14B	MSMS	A375_MHC_IP_R1	1	641.3194580078125	2	641.312832	1280.61111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.28	1	106.28	105.78	106.78	0								0	0	0	0.15417	1	39013	39013		7.2892	1.5574	1		+		29790	19614	21403	21569	29141	29141					-0.01797095777010327
LETLHALEDLL	11	Unmodified	_LETLHALEDLL_					0	0	0		ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;ENST00000544576.1_1_8:145297127-145303835:+|nuORF	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	A375_MHC_IP_R1	1	423.30328369140625	3	422.902849	1265.68672	0.22956	9.7081E-05	0.54606	0.00023093	0.77562	0.00032801	422.9032093259931	69.045	0.50739	69.045	68.819	69.326	0					15	9	2	0	0	0	0.71717	1	25079	25079		14.218	1.3456	1	1815600			29791	8251	21404	21570	29142	29142					0.0645020467491122
LETNHTDEP	9	Unmodified	_LETNHTDEP_					0	0	0		ENST00000288670.13_1_2:153497389-153504345:+|nuORF	ENST00000288670.13_1_2:153497389-153504345:+|nuORF	ENST00000288670.13_1_2:153497389-153504345:+|nuORF	MSMS	A375_MHC_IP_R1	1	528.2159423828125	2	528.235635	1054.45672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.331	1	38.331	37.831	38.831	0								0	0	0	0.1535	1	12994	12994		15.847	2.3393	1				29792	10461	21405	21571	29143	29143					-0.06833208938064672
LETPEIKSW	9	Unmodified	_LETPEIKSW_					0	0	0			REV__nc|ENSG00000147202|O60879-2|DIAPH2	REV__nc|ENSG00000147202|O60879-2|DIAPH2	MULTI-SECPEP	A375_MHC_IP_R2	2	551.6578979492188	2	551.792589	1101.57063	-0.7734	-0.00042676	-2.7943	-0.0015419	-3.5677	-0.0019686	551.7909642554323	77.93	0.35809	78.673	78.52	78.878	0.74293					9	6	2	0	0	0	0.78348	1	29671	29671		4.3292	1.8308	1	1217500	+		29793	19577	21406	21572	29144	29144					0.023903058948917533
LETSDTESCGS	11	Unmodified	_LETSDTESCGS_					0	0	0			REV__nc|ENSG00000168389|Q8NA29-3|MFSD2A	REV__nc|ENSG00000168389|Q8NA29-3|MFSD2A	MSMS	A375_MHC_IP_R2	2	564.6669921875	2	564.721701	1127.42885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.69	1	104.45	103.95	104.95	0.76428								0	0	0	0.16124	1	39258	39258		12.241	0.60036	1		+		29794	20849	21407	21573	29145	29145					-0.12976899980458256
LETSLPRSW	9	Unmodified	_LETSLPRSW_					0	0	0		ENST00000366603.6_1_1:235384897-235384960:-|nuORF	ENST00000366603.6_1_1:235384897-235384960:-|nuORF	ENST00000366603.6_1_1:235384897-235384960:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	544.6875	2	544.790381	1087.56621	-0.93196	-0.00050773	-1.2558	-0.00068414	-2.1878	-0.0011919	545.291037768031	72.498	0.55779	73.234	72.973	73.53	0.73541					15	10	2	0	0	0	0.75466	1	27574	27574		7.9102	0	1	920160			29795	11061	21408	21574	29146	29146					0.025928414719373905
LETTSLPVVVI	11	Unmodified	_LETTSLPVVVI_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MSMS	A375_MHC_IP_R2	2	585.9935913085938	2	585.852647	1169.69074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.898	1	96.648	96.148	97.148	0.75045								0	0	0	0.16179	1	36420	36420		9.3831	3.6513	1				29796	3306	21409	21575	29147	29147					0.11268294168621651
LETVAHPLV	9	Unmodified	_LETVAHPLV_					0	0	0			REV__ENST00000411980.1_1_2:98823421-98823919:+|nuORF	REV__ENST00000411980.1_1_2:98823421-98823919:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	489.6805114746094	2	489.784567	977.554582	-0.32874	-0.00016101	-1.0165	-0.00049786	-1.3452	-0.00065887	489.78426142030816	95.742	0.55534	95.742	95.565	96.12	0					18	10	2	0	0	0	0.64808	1	35203	35203		11.64	2.2572	1	900020	+		29797	24484	21410	21576	29148	29148					0.06490644448615512
LETVDYDRTR	10	Unmodified	_LETVDYDRTR_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.Y6402Ffs*2|1|0.34|ENSG00000183091|chr2:151492486-151492487|AT/-|frameshift_variant	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	A375_MHC_IP_R1	1	634.7113647460938	2	634.317491	1266.62043	-0.99177	-0.0006291	-0.16302	-0.00010341	-1.1548	-0.00073251	634.3173822944563	26.55	1.0603	26.55	26.118	27.179	0					59	20	5	0	0	0	0.11665	1	7829	7829		60.074	12.325	1	151160000			29798	8464	21411	21577	29149	29149					-0.002216111671486942
LETVDYDRTR	10	Unmodified	_LETVDYDRTR_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.Y6402Ffs*2|1|0.34|ENSG00000183091|chr2:151492486-151492487|AT/-|frameshift_variant	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	A375_MHC_IP_R2	2	634.7109985351562	2	634.317491	1266.62043	-1.224	-0.00077639	0.094772	6.0115E-05	-1.1292	-0.00071627	634.3175620390087	25.968	0.86426	26.628	26.245	27.109	0.65992					55	16	5	0	0	0	0.11665	1	8641	8641		60.074	12.325	1	159420000			29799	8464	21411	21577	29150	29150					-0.002216111671486942
LETVFITY	8	Unmodified	_LETVFITY_					0	0	0		ENSG00000178084|ENST00000318351|HTR3C	ENSG00000178084|ENST00000318351|HTR3C	ENSG00000178084|ENST00000318351|HTR3C	MSMS	A375_MHC_IP_R1	1	493.2117004394531	2	493.265676	984.516799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.55	1	129.55	129.05	130.05	0								0	0	0	0.16876	1	49834	49834		20.871	0	1				29800	8131	21412	21578	29151	29151					0.023921334631381796
LEVDDMCLL	9	Unmodified	_LEVDDMCLL_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN	REV__ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	A375_MHC_IP_R1	1	526.131103515625	2	525.745936	1049.47732	0.0073636	3.8714E-06	-0.53847	-0.0002831	-0.5311	-0.00027922	525.7456723142521	49.26	0.55699	49.26	48.983	49.54	0					13	10	2	0	0	0	0.67483	1	17335	17335		20.454	2.3186	1	2031000	+		29801	19819	21413	21579	29152	29152					-0.045440778742431576
LEVDDMCLL	9	Unmodified	_LEVDDMCLL_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN	REV__ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1914672851562	2	525.745936	1049.47732	-0.49944	-0.00026258	-0.011909	-6.261E-06	-0.51135	-0.00026884	525.7458164679966	48.6	0.40459	49.357	49.08	49.485	0.75737					12	7	2	0	0	0	0.73363	1	18166	18166		10.824	2.2306	1	1202900	+		29802	19819	21413	21579	29153	29153					-0.045440778742431576
LEVDVLEDD	9	Unmodified	_LEVDVLEDD_					0	0	0		NOMO1|p.E574D|1|0.22|ENSG00000103512|chr16:14866607-14866607|A/C|missense_variant	NOMO1|p.E574D|1|0.22|ENSG00000103512|chr16:14866607-14866607|A/C|missense_variant	NOMO1|p.E574D|1|0.22|ENSG00000103512|chr16:14866607-14866607|A/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	523.7029418945312	2	523.748044	1045.48154	-0.0029938	-1.568E-06	0.52497	0.00027495	0.52198	0.00027339	523.7482529396913	49.205	0.96365	49.205	48.933	49.896	0					35	18	3	0	0	0	0.2002	1	17452	17452		37.974	0	1	15215000			29803	15015	21414	21580	29154	29154					-0.03938573855316463
LEVDVLEDD	9	Unmodified	_LEVDVLEDD_					0	0	0		NOMO1|p.E574D|1|0.22|ENSG00000103512|chr16:14866607-14866607|A/C|missense_variant	NOMO1|p.E574D|1|0.22|ENSG00000103512|chr16:14866607-14866607|A/C|missense_variant	NOMO1|p.E574D|1|0.22|ENSG00000103512|chr16:14866607-14866607|A/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	524.1483764648438	2	523.748044	1045.48154	-0.55706	-0.00029176	0.75117	0.00039342	0.19411	0.00010167	523.7484050445884	48.547	0.70998	49.304	48.98	49.69	0.75737					37	13	4	0	0	0	0.3213	1	18198	18198		46.021	2.1627	1	15871000			29804	15015	21414	21580	29155	29155					-0.03938573855316463
LEVFGETGQL	10	Unmodified	_LEVFGETGQL_					0	0	0			REV__ENST00000448224.1_1_2:219612442-219613603:+|nuORF	REV__ENST00000448224.1_1_2:219612442-219613603:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6777954101562	2	546.782222	1091.54989	-0.55007	-0.00030077	0.68425	0.00037413	0.13417	7.3364E-05	546.7814922381299	99.499	0.30116	99.499	99.422	99.723	0					7	5	2	0	0	0	0.88918	1	36633	36633		8.7454	0	1	1475600	+		29805	24873	21415	21581	29156	29156					0.007777155151870829
LEVFNGKEDRE	11	Unmodified	_LEVFNGKEDRE_					0	0	0			REV__nc|ENSG00000151062|Q7Z3S7-2|CACNA2D4	REV__nc|ENSG00000151062|Q7Z3S7-2|CACNA2D4	MULTI-SECPEP	A375_MHC_IP_R2	2	446.2892761230469	3	445.889491	1334.64664	-0.39038	-0.00017407	-0.28157	-0.00012555	-0.67195	-0.00029962	445.88929500530713	30.617	0.65515	31.335	31.064	31.719	0.71857					32	12	4	0	0	0	0.98782	1	10758	10758		11.631	11.631	1	15019000	+		29806	19737	21416	21582	29157	29157					-0.007293419956567959
LEVGGHEDTW	10	Unmodified	_LEVGGHEDTW_					0	0	0		ENST00000443942.5_1_3:38542926-38542986:+|nuORF	ENST00000443942.5_1_3:38542926-38542986:+|nuORF	ENST00000443942.5_1_3:38542926-38542986:+|nuORF	MSMS	A375_MHC_IP_R1	1	571.7120971679688	2	571.759278	1141.504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.85	1	107.85	107.35	108.35	0								0	0	0	0.15308	1	39570	39570		10.824	3.5347	1				29807	12009	21417	21583	29158	29158					-0.06108929667038865
LEVHKQNALFQ	11	Unmodified	_LEVHKQNALFQ_					0	0	0		nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;ENST00000587673.5_1_19:1109414-1111598:-|nuORF	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	MULTI-SECPEP	A375_MHC_IP_R1	1	443.3100891113281	3	442.910338	1325.70918	-0.46077	-0.00020408	0.26832	0.00011884	-0.19245	-8.5239E-05	442.91045951935143	68.184	0.76125	68.184	67.854	68.616	0					21	14	3	0	0	0	0.99916	1	24722	24722		2.4348	0	1	2877900			29808	1363	21418	21584	29159	29159					0.05935848863191495
LEVHNRRMD	9	Unmodified	_LEVHNRRMD_					0	0	0			REV__CON__Q2TBQ1	REV__CON__Q2TBQ1	MULTI-SECPEP	A375_MHC_IP_R1	1	585.6591796875	2	585.295839	1168.57712	0.083568	4.8912E-05	-0.14106	-8.2563E-05	-0.057493	-3.3651E-05	585.2956529518015	69.199	0.70991	69.199	68.717	69.427	0					32	13	3	0	0	0	0.69507	1	25184	25184		9.3831	0	1	5721100	+	+	29809	15882	21419	21585	29160	29160					-0.0004207942542961973
LEVHRLVLW	9	Unmodified	_LEVHRLVLW_					0	0	0		ENST00000381151.4_2_21:35469458-35469491:+|nuORF	ENST00000381151.4_2_21:35469458-35469491:+|nuORF	ENST00000381151.4_2_21:35469458-35469491:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	583.2481689453125	2	582.848033	1163.68151	0.28492	0.00016606	-0.3114	-0.0001815	-0.026477	-1.5432E-05	582.8478580146357	69.571	0.45586	69.571	69.326	69.782	0					21	8	3	0	0	0	0.71541	1	25232	25232		7.2892	0	1	3946000			29810	11369	21420	21586	29161	29161					0.10621990393610758
LEVLHKTLIDK	11	Unmodified	_LEVLHKTLIDK_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MSMS	A375_MHC_IP_R1	1	654.7921142578125	2	654.89792	1307.78129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.714	1	99.714	99.214	100.21	0								0	0	0	0.16273	1	36634	36634		4.5289	1.2476	1		+		29811	19676	21421	21587	29162	29162					0.13970763216889281
LEVLHLQLKTL	11	Unmodified	_LEVLHLQLKTL_					0	0	0		nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2	nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-3|SYNJ2	MSMS	A375_MHC_IP_R1	1	653.8514404296875	2	653.908288	1305.80202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.572	1	86.572	86.072	87.072	0								0	0	0	0.16316	1	31747	31747		2.2828	0.80087	1				29812	1671	21422	21588	29163	29163					0.16135353596564528
LEVQIETMK	9	Unmodified	_LEVQIETMK_					0	0	0		nc|ENSG00000122417|Q9ULJ1-5|ODF2L;nc|ENSG00000122417|Q9ULJ1-6|ODF2L;nc|ENSG00000122417|Q9ULJ1-3|ODF2L;nc|ENSG00000122417|Q9ULJ1-2|ODF2L;nc|ENSG00000122417|Q9ULJ1|ODF2L;ENSG00000122417|ENST00000460698|ODF2L	nc|ENSG00000122417|Q9ULJ1-5|ODF2L	nc|ENSG00000122417|Q9ULJ1-5|ODF2L	MULTI-SECPEP	A375_MHC_IP_R2	2	363.941162109375	3	364.198609	1089.574	-0.11305	-4.1174E-05	1.1327	0.00041253	1.0196	0.00037135	364.53416317331937	50.861	0.85924	51.615	51.057	51.917	0.75406					22	16	3	0	0	0	0.73363	1	19121	19121		2.086	0	1	1083500			29813	3780	21423	21589	29164	29164					0.0327923267720962
LEVQVLTPGGE	11	Unmodified	_LEVQVLTPGGE_					0	0	0		ENSG00000011201|ENST00000262648|ANOS1	ENSG00000011201|ENST00000262648|ANOS1	ENSG00000011201|ENST00000262648|ANOS1	MULTI-SECPEP	A375_MHC_IP_R2	2	380.9364318847656	3	381.208161	1140.60265	0.045383	1.73E-05	1.2163	0.00046365	1.2616	0.00048095	381.2085489583403	27.445	0.3559	28.124	27.945	28.301	0.67857					11	6	2	0	0	0	0.92455	1	9316	9316		3.8459	0	1	3570100			29814	993	21424	21590	29165	29165					0.037976735780148374
LEVQVPED	8	Unmodified	_LEVQVPED_					0	0	0		nc|ENSG00000103855|Q5ZPR3-2|CD276;CD276|p.T378Rfs*2|1|0.29|ENSG00000103855|chr15:73704236-73704236|C/-|frameshift_variant;nc|ENSG00000103855|Q5ZPR3-3|CD276;nc|ENSG00000103855|Q5ZPR3-4|CD276;ENSG00000103855|ENST00000318443|CD276;ENST00000534255.1_1_8:145193835-145194452:+|nuORF;ENSG00000235173|ENST00000347708|HGH1	nc|ENSG00000103855|Q5ZPR3-2|CD276;ENSG00000235173|ENST00000347708|HGH1	ENSG00000235173|ENST00000347708|HGH1	MULTI-MSMS	A375_MHC_IP_R1	1	465.13433837890625	2	464.73474	927.454927	-0.11834	-5.4997E-05	-0.010472	-4.8669E-06	-0.12881	-5.9864E-05	464.73468180084274	62.705	0.46016	62.705	62.454	62.914	0					13	8	2	0	0	0	0.57209	2	22683	22640;22683		46.021	11.919	1	1065700			29815	335;9745	21425	21591	29166;29167	29167					-0.011702179559847536
LEVQVPED	8	Unmodified	_LEVQVPED_					0	0	0		nc|ENSG00000103855|Q5ZPR3-2|CD276;CD276|p.T378Rfs*2|1|0.29|ENSG00000103855|chr15:73704236-73704236|C/-|frameshift_variant;nc|ENSG00000103855|Q5ZPR3-3|CD276;nc|ENSG00000103855|Q5ZPR3-4|CD276;ENSG00000103855|ENST00000318443|CD276;ENST00000534255.1_1_8:145193835-145194452:+|nuORF;ENSG00000235173|ENST00000347708|HGH1	nc|ENSG00000103855|Q5ZPR3-2|CD276;ENSG00000235173|ENST00000347708|HGH1	ENSG00000235173|ENST00000347708|HGH1	MULTI-MSMS	A375_MHC_IP_R2	2	465.13421630859375	2	464.73474	927.454927	-0.8385	-0.00038968	-0.20576	-9.5624E-05	-1.0443	-0.00048531	464.73466277959534	62.036	0.45653	62.779	62.571	63.028	0.74263					14	8	2	0	0	0	0.42086	1	23552	23552		52.268	3.9225	1	1312300			29816	335;9745	21425	21591	29168	29168					-0.011702179559847536
LEVQYFFKIL	10	Unmodified	_LEVQYFFKIL_					0	0	0		nc|ENSG00000143156|Q9Y5B8-2|NME7;ENSG00000143156|ENST00000367811|NME7	nc|ENSG00000143156|Q9Y5B8-2|NME7	nc|ENSG00000143156|Q9Y5B8-2|NME7	MULTI-MSMS	A375_MHC_IP_R2	2	434.3173828125	3	433.91643	1298.72746	-0.45684	-0.00019823	4.4746	0.0019416	4.0178	0.0017434	433.9173888172111	35.714	0.60794	36.478	36.03	36.638	0.76338					15	11	2	0	0	0	0.70496	1	12954	12954		5.7834	0.38072	1	2444300			29817	5350	21426	21592	29169	29169					0.09004590785184519
LEVQYFFKIL	10	Unmodified	_LEVQYFFKIL_					0	0	0		nc|ENSG00000143156|Q9Y5B8-2|NME7;ENSG00000143156|ENST00000367811|NME7	nc|ENSG00000143156|Q9Y5B8-2|NME7	nc|ENSG00000143156|Q9Y5B8-2|NME7	MULTI-MATCH	A375_MHC_IP_R1	1		3	433.91643	1298.72746	-0.42365	-0.00018383	4.6465	0.0020162	4.2228	0.0018324	433.9175853820576	36.533	0.55783	36.533	36.287	36.845	0	0.027794	8.5511E-05	NaN	5.7834	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2597500			29818	5350	21426	21592							0.09004590785184519
LEVRKELVA	9	Unmodified	_LEVRKELVA_					0	0	0			REV__nc|ENSG00000160191|O76083-9|PDE9A	REV__nc|ENSG00000160191|O76083-9|PDE9A	MULTI-MSMS	A375_MHC_IP_R2	2	353.28497314453125	3	352.885241	1055.63389	-0.18447	-6.5098E-05	-0.075391	-2.6605E-05	-0.25986	-9.1702E-05	352.88519171835077	64.556	0.76374	65.296	65.004	65.768	0.74022					39	14	4	0	0	0	0.064406	1	24454	24454		45.74	3.4274	1	16426000	+		29819	20149	21427	21593	29170	29170					0.10830291402771763
LEVSEPIIVFN	11	Unmodified	_LEVSEPIIVFN_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;nc|ENSG00000158486|Q8TD57-3|DNAH3;nc|ENSG00000158486|Q8TD57-2|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MSMS	A375_MHC_IP_R1	1	630.397216796875	2	630.347729	1258.6809	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.059	1	94.059	93.559	94.559	0								0	0	0	0.16191	1	34572	34572		8.7454	0	1				29820	6309	21428	21594	29171	29171					0.06191106163259974
LEVSKKIKF	9	Unmodified	_LEVSKKIKF_					0	0	0		ENST00000518096.1_1_8:30209440-30209518:+|nuORF	ENST00000518096.1_1_8:30209440-30209518:+|nuORF	ENST00000518096.1_1_8:30209440-30209518:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	364.60986328125	3	364.56562	1090.67503	0.1316	4.7975E-05	-0.071985	-2.6243E-05	0.059611	2.1732E-05	364.56564061282313	27.339	0.50598	27.339	27.128	27.634	0					23	9	3	0	0	0	0.75032	1	8350	8350		2.4985	0	1	4093000			29821	12969	21429	21595	29172	29172					0.13332052442228814
LEVSKKIKF	9	Unmodified	_LEVSKKIKF_					0	0	0		ENST00000518096.1_1_8:30209440-30209518:+|nuORF	ENST00000518096.1_1_8:30209440-30209518:+|nuORF	ENST00000518096.1_1_8:30209440-30209518:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	364.9654235839844	3	364.56562	1090.67503	-0.3656	-0.00013328	0.18857	6.8744E-05	-0.17703	-6.454E-05	364.5656675459654	26.527	0.50916	27.187	27.008	27.517	0.65992					20	9	3	0	0	0	0.68705	2	9009	8916;9009		8.1555	3.2585	1	5483700			29822	12969	21429	21595	29173;29174	29174					0.13332052442228814
LEVTFIKLLIK	11	Unmodified	_LEVTFIKLLIK_					0	0	0			REV__nc|ENSG00000095596|O43174-2|CYP26A1	REV__nc|ENSG00000095596|O43174-2|CYP26A1	MSMS	A375_MHC_IP_R2	2	659.023681640625	2	658.931231	1315.84791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.85	1	108.61	108.11	109.11	0.75436								0	0	0	0.16334	1	40737	40737		1.3295	0	1		+		29823	16996	21430	21596	29175	29175					0.2026199877880117
LEVTSISRKVQ	11	Unmodified	_LEVTSISRKVQ_					0	0	0		CD244|p.G114R|1|0.33|ENSG00000122223|chr1:160841623-160841623|C/T|missense_variant	CD244|p.G114R|1|0.33|ENSG00000122223|chr1:160841623-160841623|C/T|missense_variant	CD244|p.G114R|1|0.33|ENSG00000122223|chr1:160841623-160841623|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	630.413818359375	2	630.369527	1258.7245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.444	1	82.187	81.687	82.687	0.74293								0	0	0	0.16258	1	30928	30928		5.2969	0	1				29824	333	21431	21597	29176	29176					0.10548715660365815
LEVWKSKQ	8	Unmodified	_LEVWKSKQ_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-SECPEP	A375_MHC_IP_R1	1	508.8667297363281	2	509.290017	1016.56548	-0.59172	-0.00030136	-1.6853	-0.00085832	-2.277	-0.0011597	509.28902942367887	80.531	0.608	80.531	80.187	80.795	0					30	11	4	0	0	0	0.87643	1	29333	29333		25.399	1.3787	1	1788200			29825	3120	21432	21598	29177	29177					0.057860468229023354
LEWDDSTLSY	10	Unmodified	_LEWDDSTLSY_					0	0	0		ENSG00000171603|ENST00000377298|CLSTN1;nc|ENSG00000171603|O94985-2|CLSTN1;ENST00000477264.1_1_1:9790568-9793533:-|nuORF	ENSG00000171603|ENST00000377298|CLSTN1	ENSG00000171603|ENST00000377298|CLSTN1	MULTI-MSMS	A375_MHC_IP_R2	2	615.1715087890625	2	614.772051	1227.52955	-0.61431	-0.00037766	-0.85507	-0.00052568	-1.4694	-0.00090334	614.771706811813	106.03	0.7145	106.79	106.42	107.14	0.75977					40	13	4	0	0	0	0.0038543	3	40061	40061;40077;40079		111.29	65.266	1	4811700			29826	7619	21433	21599	29178;29179;29180	29178					-0.07511499935276333
LEWDDSTLSY	10	Unmodified	_LEWDDSTLSY_					0	0	0		ENSG00000171603|ENST00000377298|CLSTN1;nc|ENSG00000171603|O94985-2|CLSTN1;ENST00000477264.1_1_1:9790568-9793533:-|nuORF	ENSG00000171603|ENST00000377298|CLSTN1	ENSG00000171603|ENST00000377298|CLSTN1	MULTI-MATCH	A375_MHC_IP_R1	1		2	614.772051	1227.52955	-0.1519	-9.3383E-05	-0.52667	-0.00032378	-0.67857	-0.00041717	614.77194688743	106.58	0.81918	106.58	106.16	106.98	0	-0.10214	0.00020068	NaN	111.29	39	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6193700			29827	7619	21433	21599							-0.07511499935276333
LEWDEMDI	8	Unmodified	_LEWDEMDI_					0	0	0		ENSG00000151320|ENST00000280979|AKAP6	ENSG00000151320|ENST00000280979|AKAP6	ENSG00000151320|ENST00000280979|AKAP6	MULTI-MSMS	A375_MHC_IP_R1	1	525.6241455078125	2	525.726058	1049.43756	-0.67505	-0.00035489	0.50255	0.0002642	-0.1725	-9.0688E-05	525.7261029603923	84.412	0.76006	84.412	83.937	84.697	0					26	14	3	0	0	0	0.75322	1	30967	30967		19.439	2.3524	1	4239000			29828	5894	21434	21600	29181	29181					-0.08517881553302686
LEWERIRRQ	9	Unmodified	_LEWERIRRQ_					0	0	0		nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2;ITSN2|p.K1104Rfs*9|1|0.18|ENSG00000198399|chr2:24246872-24246873|TC/-|frameshift_variant;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	MSMS	A375_MHC_IP_R1	1	429.29144287109375	3	429.242311	1284.7051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.349	1	65.349	64.849	65.849	0								0	0	0	0.15486	1	23657	23657		7.609	2.5614	1				29829	9265	21435	21601	29182	29182					0.0741380416013726
LEWHGRGLPS	10	Unmodified	_LEWHGRGLPS_					0	0	0			REV__MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant	REV__MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	575.6795043945312	2	576.301447	1150.58834	-0.46968	-0.00027068	-1.1744	-0.00067678	-1.644	-0.00094746	576.3008301881426	58.288	0.35735	59.037	58.829	59.187	0.74894					9	6	2	0	0	0	0.70528	1	22091	22091		32.786	14.413	1	992610	+		29830	17384	21436	21602	29183	29183					0.019070659403723766
LEWKPDAPL	9	Unmodified	_LEWKPDAPL_					0	0	0			REV__nc|ENSG00000068078|P22607-3|FGFR3	REV__nc|ENSG00000068078|P22607-3|FGFR3	MULTI-SECPEP	A375_MHC_IP_R1	1	357.261962890625	3	356.862325	1067.56515	-0.29615	-0.00010568	0.03845	1.3721E-05	-0.2577	-9.1963E-05	356.86227639125855	41.312	0.55799	41.312	41.013	41.571	0					23	10	3	0	0	0	0.76187	1	14311	14311		0.86438	0	1	7403200	+		29831	27112	21437	21603	29184	29184					0.034066271030496864
LEWLEEQSLYL	11	Unmodified	_LEWLEEQSLYL_					0	0	0			REV__ENSG00000148377|ENST00000277517|IDI2	REV__ENSG00000148377|ENST00000277517|IDI2	MULTI-MSMS	A375_MHC_IP_R2	2	712.7816772460938	2	711.8612	1421.70785	-0.66033	-0.00047006	-2.7459	-0.0019547	-3.4062	-0.0024247	711.8591369579009	101.53	0.50473	102.3	101.96	102.46	0.76428					20	9	3	0	0	0	0.7039	2	38450	38418;38450		15.248	2.206	1	2563100	+		29832	19626	21438	21604	29185;29186	29186					0.013861699837889319
LEWLFMLLI	9	Unmodified	_LEWLFMLLI_					0	0	0			REV__DMP1|p.G12E|1|0.05|ENSG00000152592|chr4:87656527-87656527|G/A|missense_variant	REV__DMP1|p.G12E|1|0.05|ENSG00000152592|chr4:87656527-87656527|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	392.63970947265625	3	393.22784	1176.66169	-0.84992	-0.00033421	-0.17775	-6.9897E-05	-1.0277	-0.00040411	393.5618706880352	37.005	0.3539	37.776	37.513	37.867	0.7709					8	6	2	0	0	0	0.75842	1	13442	13442		8.7454	0	1	1402700	+		29833	16000	21439	21605	29187	29187					0.08042478338666115
LEWLKLIILL	10	Unmodified	_LEWLKLIILL_					0	0	0		tr|U7SLQ9|U7SLQ9_FUSNUL-lysineexporterfamilyproteinLysE/ArgOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01862PE=3SV=1	tr|U7SLQ9|U7SLQ9_FUSNUL-lysineexporterfamilyproteinLysE/ArgOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01862PE=3SV=1	tr|U7SLQ9|U7SLQ9_FUSNUL-lysineexporterfamilyproteinLysE/ArgOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01862PE=3SV=1	MSMS	A375_MHC_IP_R2	2	627.4177856445312	2	627.415217	1252.81588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.42	1	117.08	116.58	117.58	0.65962								0	0	0	0.1552	1	43967	43967		3.9444	0.3479	1				29834	29508	21440	21606	29188	29188					0.19958631095664714
LEWMFCDF	8	Unmodified	_LEWMFCDF_					0	0	0		ENSG00000179826|ENST00000621697|MRGPRX3	ENSG00000179826|ENST00000621697|MRGPRX3	ENSG00000179826|ENST00000621697|MRGPRX3	MULTI-MSMS	A375_MHC_IP_R2	2	545.67138671875	2	545.722264	1089.42997	-0.72949	-0.0003981	-1.41	-0.00076947	-2.1395	-0.0011676	545.7220116137574	70.021	1.1182	70.755	70.284	71.402	0.73421					56	21	4	0	0	0	0.77488	2	26409	26409;26420		13.508	1.8676	1	7975200			29835	8250	21441	21607	29189;29190	29189					-0.1111631235457935
LEWMGWFNTYT	11	Unmodified	_LEWMGWFNTYT_					0	0	0		nc|ENSG00000211979|A0A0B4J1V7|IGHV7-81	nc|ENSG00000211979|A0A0B4J1V7|IGHV7-81	nc|ENSG00000211979|A0A0B4J1V7|IGHV7-81	MULTI-MSMS	A375_MHC_IP_R1	1	723.948974609375	2	724.321188	1446.62782	-0.53367	-0.00038655	-3.37	-0.002441	-3.9037	-0.0028275	724.819497740361	89.349	0.15434	89.349	89.272	89.426	0					4	2	2	0	0	0	0.73647	1	32815	32815		2.7352	1.2533	1	560260			29836	14892	21442	21608	29191	29191					-0.07762594891073604
LEWTQISTRYL	11	Unmodified	_LEWTQISTRYL_					0	0	0		nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L;nc|ENSG00000144893|Q86YW9-2|MED12L;nc|ENSG00000144893|Q86YW9-3|MED12L	nc|ENSG00000144893|Q86YW9-4|MED12L	nc|ENSG00000144893|Q86YW9-4|MED12L	MULTI-SECPEP	A375_MHC_IP_R1	1	705.568359375	2	705.374809	1408.73507	-0.70965	-0.00050057	-0.30752	-0.00021691	-1.0172	-0.00071748	705.3743387163533	125.17	0.29935	125.17	125.05	125.35	0					7	5	2	0	0	0	0.98673	1	47478	47478		10.151	1.4052	1	19896000			29837	5526	21443	21609	29192	29192					0.04704698314799316
LEYADKVFTY	10	Unmodified	_LEYADKVFTY_					0	0	0		nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;nc|ENSG00000196876|Q9UQD0-4|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000136531|Q99250-2|SCN2A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF;ENSG00000136531|ENST00000375437|SCN2A;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A;nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A;ENSG00000007314|ENST00000435607|SCN4A	nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000153253|Q9NY46-4|SCN3A;ENSG00000007314|ENST00000435607|SCN4A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	MULTI-SECPEP	A375_MHC_IP_R1	1	625.197998046875	2	624.810979	1247.6074	-0.54636	-0.00034137	1.3219	0.00082594	0.77554	0.00048456	624.8119344203748	75.713	0.45224	75.713	75.514	75.966	0					14	8	2	0	0	0	0.89369	1	27536	27536		18.373	18.373	1	1608200			29838	14841;6022;5477;941	21444	21610	29193	29193					-0.0064944227922296704
LEYDPYSIY	9	Unmodified	_LEYDPYSIY_					0	0	0		nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A;ENST00000549185.5_3_14:31803609-31872202:-|nuORF	nc|ENSG00000129493|Q86XA9-2|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	MULTI-SECPEP	A375_MHC_IP_R2	2	582.1738891601562	2	581.76878	1161.52301	-0.23042	-0.00013405	-2.6618	-0.0015485	-2.8922	-0.0016826	582.2675591170797	98.898	0.66139	99.658	99.352	100.01	0.75977					16	12	2	0	0	0	0.75466	1	37631	37631		7.9102	0	1	2001100			29839	4193	21445	21611	29194	29194					-0.051293930959900536
LEYEKLFGAN	10	Unmodified	_LEYEKLFGAN_					0	0	0			REV__ENST00000412768.1_1_9:94897097-94898934:+|nuORF	REV__ENST00000412768.1_1_9:94897097-94898934:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	592.2415161132812	2	592.303321	1182.59209	-0.5561	-0.00032938	-1.48	-0.00087662	-2.0361	-0.001206	592.302451079687	102.8	0.5593	103.57	103.38	103.94	0.76428					14	10	2	0	0	0	0.91773	1	39040	39040		7.1017	3.8204	1	835580	+		29840	24489	21446	21612	29195	29195					0.008096909235973726
LEYGEHYF	8	Unmodified	_LEYGEHYF_					0	0	0			REV__ENSG00000165895|ENST00000298815|ARHGAP42	REV__ENSG00000165895|ENST00000298815|ARHGAP42	MULTI-MSMS	A375_MHC_IP_R2	2	529.1949462890625	2	529.234907	1056.45526	-0.61937	-0.00032779	0.51433	0.0002722	-0.10505	-5.5596E-05	529.2354289505358	32.841	0.50896	33.578	33.162	33.671	0.73692					13	9	2	0	0	0	0.7758	1	11565	11565		10.183	2.8942	1	1688700	+		29841	20634	21447	21613	29196	29196					-0.07070798236145492
LEYHNRIYI	9	Unmodified	_LEYHNRIYI_					0	0	0		ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	MULTI-SECPEP	A375_MHC_IP_R1	1	407.97265625	3	407.552262	1219.63496	0.086485	3.5247E-05	-0.47889	-0.00019517	-0.39241	-0.00015993	407.5519844637066	69.987	0.45453	69.987	69.782	70.237	0					12	8	2	0	0	0	0.75842	1	25457	25457		2.7352	0	1	909430			29842	6123	21448	21614	29197	29197					0.033925057716714946
LEYPNSAAHY	10	Unmodified	_LEYPNSAAHY_					0	0	0		nc|ENSG00000099954|Q9BXF3|CECR2;ENSG00000099954|ENST00000262608|CECR2	nc|ENSG00000099954|Q9BXF3|CECR2	nc|ENSG00000099954|Q9BXF3|CECR2	MSMS	A375_MHC_IP_R2	2	582.70068359375	2	582.769645	1163.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.94	1	39.715	39.215	40.215	0.77451								0	0	0	0.14483	1	14358	14358		27.629	4.9707	1				29843	14503	21449	21615	29198	29198					-0.05048339287372983
LEYSGRQKI	9	Unmodified	_LEYSGRQKI_					0	0	0		ENST00000430060.1_1_21:23157296-23158685:+|nuORF	ENST00000430060.1_1_21:23157296-23158685:+|nuORF	ENST00000430060.1_1_21:23157296-23158685:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	365.2770690917969	3	365.204862	1092.59276	-0.13226	-4.8302E-05	0.15389	5.6201E-05	0.021632	7.9E-06	365.2049095487182	29.924	0.80006	29.924	29.703	30.503	0					36	15	3	0	0	0	0.62767	1	9674	9674		4.5289	0	1	120680000			29844	11850	21450	21616	29199	29199					0.0501653036328662
LEYYRSSFPL	10	Unmodified	_LEYYRSSFPL_					0	0	0			REV__nc|ENSG00000144045|Q8TE96-3|DQX1	REV__nc|ENSG00000144045|Q8TE96-3|DQX1	MSMS	A375_MHC_IP_R2	2	425.6383056640625	3	425.552039	1273.63429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.925	1	100.69	100.19	101.19	0.76278								0	0	0	0.15522	1	37899	37899		3.8763	0	1		+		29845	19408	21451	21617	29200	29200					0.008416663319621875
LFAAKHFRI	9	Unmodified	_LFAAKHFRI_					0	0	0			REV__nc|ENSG00000100241|O95248|SBF1	REV__nc|ENSG00000100241|O95248|SBF1	MULTI-SECPEP	A375_MHC_IP_R2	2	368.60491943359375	3	368.222188	1101.64473	-0.10052	-3.7013E-05	-0.55405	-0.00020401	-0.65457	-0.00024103	368.2218948437664	23.357	0.30159	23.988	23.828	24.129	0.63014					8	5	2	0	0	0	0.74875	1	7477	7477		15.248	15.248	1	2773100	+		29846	17063	21452	21618	29201	29201					0.09797738567704073
LFAFCWLPNY	10	Unmodified	_LFAFCWLPNY_					0	0	0		GRPR|p.H281Y|1|0.69|ENSG00000126010|chrX:16152331-16152331|C/T|missense_variant	GRPR|p.H281Y|1|0.69|ENSG00000126010|chrX:16152331-16152331|C/T|missense_variant	GRPR|p.H281Y|1|0.69|ENSG00000126010|chrX:16152331-16152331|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	637.3721923828125	2	637.307352	1272.60015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.386	1	76.386	75.886	76.886	0								0	0	0	0.15398	1	27843	27843		7.9102	1.187	1				29847	14093	21453	21619	29202	29202					-0.025244533606382902
LFALYKLKKRY	11	Unmodified	_LFALYKLKKRY_					0	0	0			REV__ENST00000510957.1_1_22:31049909-31050715:-|nuORF	REV__ENST00000510957.1_1_22:31049909-31050715:-|nuORF	MSMS	A375_MHC_IP_R2	2	721.8571166992188	2	721.947747	1441.88094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.39	1	108.15	107.65	108.65	0.75436								0	0	0	0.16331	1	40572	40572		1.4819	0.15237	1		+		29848	25608	21454	21620	29203	29203					0.1776762562149088
LFASQFSLGFV	11	Unmodified	_LFASQFSLGFV_					0	0	0		nc|ENSG00000136111|O60343-4|TBC1D4;nc|ENSG00000136111|O60343-5|TBC1D4;nc|ENSG00000136111|O60343-2|TBC1D4;nc|ENSG00000136111|O60343-3|TBC1D4;ENSG00000136111|ENST00000377636|TBC1D4	nc|ENSG00000136111|O60343-4|TBC1D4	nc|ENSG00000136111|O60343-4|TBC1D4	MULTI-MSMS	A375_MHC_IP_R1	1	406.6190185546875	3	405.88513	1214.63356	-0.37914	-0.00015389	0.17023	6.9093E-05	-0.20891	-8.4794E-05	406.2189322552647	31.313	0.65693	31.313	30.908	31.565	0					24	12	3	0	0	0	0.65093	1	10039	10039		11.631	0	1	3485200			29849	4753	21455	21621	29204	29204					0.034828716829224504
LFCFLWLW	8	Unmodified	_LFCFLWLW_					0	0	0			REV__ENST00000301923.13_2_22:40726871-40727081:+|nuORF	REV__ENST00000301923.13_2_22:40726871-40727081:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	377.2650146484375	3	376.529741	1126.56739	0.17323	6.5227E-05	4.2316	0.0015933	4.4049	0.0016586	376.86492723205095	38.472	0.66226	38.472	38.067	38.73	0					17	12	2	0	0	0	0.95327	1	13082	13082		12.532	8.2023	1	3565800	+		29850	23430	21456	21622	29205	29205					0.009173843071494048
LFCPARHEDPR	11	Unmodified	_LFCPARHEDPR_					0	0	0		ENST00000306801.7_1_17:78899237-78923276:+|nuORF	ENST00000306801.7_1_17:78899237-78923276:+|nuORF	ENST00000306801.7_1_17:78899237-78923276:+|nuORF	MSMS	A375_MHC_IP_R1	1	670.7269897460938	2	670.830046	1339.64554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.323	1	69.323	68.823	69.823	0								0	0	0	0.16124	1	25154	25154		12.241	0.74595	1				29851	10582	21457	21623	29206	29206					-0.010698348455662199
LFCPCLPG	8	Unmodified	_LFCPCLPG_					0	0	0			REV__ENST00000581396.5_1_17:17750516-17750942:-|nuORF	REV__ENST00000581396.5_1_17:17750516-17750942:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	425.603271484375	2	425.20351	848.392467	-0.26762	-0.00011379	0.0021396	9.0977E-07	-0.26548	-0.00011288	425.2034045848372	90.225	0.6076	90.225	89.88	90.488	0					26	11	3	0	0	0	0.77781	1	33133	33133		2.8892	0	1	4941900	+		29852	26350	21458	21624	29207	29207					-0.03779358829524426
LFCYSFFSF	9	Unmodified	_LFCYSFFSF_					0	0	0			REV__ENST00000265734.8_1_7:92242717-92242960:-|nuORF	REV__ENST00000265734.8_1_7:92242717-92242960:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	581.160888671875	2	580.759704	1159.50485	-0.29914	-0.00017373	1.5471	0.00089849	1.2479	0.00072476	580.7609255238991	73.853	0.55974	74.591	74.348	74.907	0.73752					27	10	3	0	0	0	0.74651	1	28050	28050		4.756	4.4054	1	2340500	+		29853	23253	21459	21625	29208	29208					-0.06851806551685513
LFDAVSGTGEY	11	Unmodified	_LFDAVSGTGEY_					0	0	0			REV__CDH6|p.S749F|1|0.62|ENSG00000113361|chr5:31323181-31323181|C/T|missense_variant	REV__CDH6|p.S749F|1|0.62|ENSG00000113361|chr5:31323181-31323181|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	579.1902465820312	2	579.769311	1157.52407	-0.32622	-0.00018913	-2.0085	-0.0011645	-2.3347	-0.0013536	579.7703313981825	45.394	0.55676	46.159	45.796	46.353	0.76518					19	10	3	0	0	0	0.98748	1	16890	16890		13.042	0.80181	1	1360200	+		29854	15623	21460	21626	29209	29209					-0.04839178727070248
LFDDGQPWGE	10	Unmodified	_LFDDGQPWGE_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MSMS	A375_MHC_IP_R1	1	582.1744995117188	2	582.253828	1162.4931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.266	1	95.266	94.766	95.766	0								0	0	0	0.15435	1	35014	35014		6.7232	0	1				29855	1726	21461	21627	29210	29210					-0.0816433204133773
LFDHLLTL	8	Unmodified	_LFDHLLTL_					0	0	0		nc|ENSG00000149100|Q7L2H7-2|EIF3M;ENSG00000149100|ENST00000531120|EIF3M	nc|ENSG00000149100|Q7L2H7-2|EIF3M;ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	MULTI-MSMS	A375_MHC_IP_R1	1	486.6816711425781	2	486.28166	970.548768	-0.2772	-0.0001348	0.036602	1.7799E-05	-0.2406	-0.000117	486.28160952343217	91.616	1.9244	91.616	90.896	92.821	0					92	37	4	0	0	0	0.64599	1	33861	33861		42.968	0	1	14867000			29856	5782;14672	21462	21628	29211	29211					0.06231545936952898
LFDIEAVQV	9	Unmodified	_LFDIEAVQV_					0	0	0			REV__ENST00000221462.8_1_19:45596280-45596451:+|nuORF	REV__ENST00000221462.8_1_19:45596280-45596451:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	517.6814575195312	2	517.281857	1032.54916	-0.98951	-0.00051185	0.34674	0.00017936	-0.64277	-0.00033249	517.2820624386094	122.11	0.45728	122.11	121.87	122.33	0					12	8	2	0	0	0	0.05754	1	45421	45421		61.357	3.8861	1	16994000	+		29857	23053	21463	21629	29212	29212					0.034189208661246084
LFDIEAVQV	9	Unmodified	_LFDIEAVQV_					0	0	0			REV__ENST00000221462.8_1_19:45596280-45596451:+|nuORF	REV__ENST00000221462.8_1_19:45596280-45596451:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	517.281857	1032.54916	-0.98951	-0.00051185	0.34674	0.00017936	-0.64277	-0.00033249	517.2820624386094	122.11	0.45728	122.11	121.87	122.33	0	0.17046	0.00017949	NaN	61.357	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16994000	+		29858	23053	21463	21629							0.034189208661246084
LFDIEAVQV	9	Unmodified	_LFDIEAVQV_					0	0	0			REV__ENST00000221462.8_1_19:45596280-45596451:+|nuORF	REV__ENST00000221462.8_1_19:45596280-45596451:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	517.281857	1032.54916	-0.75367	-0.00038986	-0.44597	-0.00023069	-1.1996	-0.00062055	517.2815675743724	121.33	0.55898	121.77	121.52	122.08	0.44488	-0.17046	-0.00064062	NaN	61.357	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20763000	+		29859	23053	21463	21629							0.034189208661246084
LFDIRASTL	9	Unmodified	_LFDIRASTL_					0	0	0		ENST00000436261.5_2_3:44541088-44541325:-|nuORF	ENST00000436261.5_2_3:44541088-44541325:-|nuORF	ENST00000436261.5_2_3:44541088-44541325:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	517.6870727539062	2	518.295299	1034.57605	-0.59536	-0.00030857	0.15409	7.9864E-05	-0.44127	-0.00022871	518.295275278018	68.339	0.60904	69.074	68.714	69.323	0.73511					26	11	4	0	0	0	0.50702	1	25891	25891		32.305	8.2849	1	5633600			29860	11925	21464	21630	29213	29213					0.060140294773418645
LFDIRASTL	9	Unmodified	_LFDIRASTL_					0	0	0		ENST00000436261.5_2_3:44541088-44541325:-|nuORF	ENST00000436261.5_2_3:44541088-44541325:-|nuORF	ENST00000436261.5_2_3:44541088-44541325:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	518.295299	1034.57605	-0.12419	-6.4365E-05	-0.24658	-0.0001278	-0.37076	-0.00019217	518.2951447647675	69.244	0.509	69.244	68.969	69.478	0	0.08464	-0.00018393	NaN	32.305	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6298000			29861	11925	21464	21630							0.060140294773418645
LFDLDETFS	9	Unmodified	_LFDLDETFS_					0	0	0		ENST00000461012.1_1_20:42265823-42265892:+|nuORF;ENSG00000101052|ENST00000373030|IFT52	ENST00000461012.1_1_20:42265823-42265892:+|nuORF	ENST00000461012.1_1_20:42265823-42265892:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	543.6976318359375	2	543.75313	1085.49171	-0.87545	-0.00047603	2.0723	0.0011268	1.1968	0.00065078	543.7549405396367	97.906	0.30575	98.662	98.585	98.891	0.75586					6	5	2	0	0	0	0.63811	1	37145	37145		12.532	3.1841	1	557690			29862	2247	21465	21631	29214	29214					-0.04761966130081419
LFDLPEAN	8	Unmodified	_LFDLPEAN_					0	0	0		ERCC3|p.S614L|2|0.37|ENSG00000163161|chr2:127271440-127271440|G/A|missense_variant	ERCC3|p.S614L|2|0.37|ENSG00000163161|chr2:127271440-127271440|G/A|missense_variant	ERCC3|p.S614L|2|0.37|ENSG00000163161|chr2:127271440-127271440|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	459.6501770019531	2	459.732	917.449448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.687	1	35.45	34.95	35.95	0.76338								0	0	0	0.16756	1	12536	12536		42.095	6.0504	1				29863	13956	21466	21632	29215	29215					-0.012578967478020786
LFDNYERL	8	Unmodified	_LFDNYERL_					0	0	0			REV__ENST00000556764.5_1_14:61201502-61275155:+|nuORF	REV__ENST00000556764.5_1_14:61201502-61275155:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	535.6665649414062	2	535.269281	1068.52401	-0.67547	-0.00036156	-1.6786	-0.00089852	-2.3541	-0.0012601	535.2683213266907	57.729	0.91699	57.729	56.956	57.873	0					32	17	2	0	0	0	0.76248	2	20644	20644;20712		16.942	0	1	2914400	+		29864	16263	21467	21633	29216;29217	29216					-0.007511339364327796
LFDPSLTLEDH	11	Unmodified	_LFDPSLTLEDH_					0	0	0		ENSG00000139620|ENST00000420613|KANSL2	ENSG00000139620|ENST00000420613|KANSL2	ENSG00000139620|ENST00000420613|KANSL2	MULTI-SECPEP	A375_MHC_IP_R2	2	644.2152709960938	2	643.816793	1285.61903	-1.0955	-0.00070531	0.23491	0.00015124	-0.8606	-0.00055407	643.8168700423122	57.185	1.1203	57.935	57.51	58.63	0.75015					59	21	5	0	0	0	0.96429	1	21539	21539		32.786	17.537	1	35211000			29865	5091	21468	21634	29218	29218					-0.012352452559071025
LFDQAFGLPR	10	Unmodified	_LFDQAFGLPR_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-SECPEP	A375_MHC_IP_R1	1	582.1767578125	2	582.314023	1162.61349	-0.34412	-0.00020038	-0.27513	-0.00016021	-0.61925	-0.0003606	582.8153449484664	94.99	0.66155	94.99	94.853	95.515	0					17	12	2	0	0	0	0.50381	1	34977	34977		47.594	15.289	1	2699100			29866	2672	21469	21635	29219	29219					0.03869120742933774
LFDQYLLV	8	Unmodified	_LFDQYLLV_					0	0	0			REV__ENST00000296666.12_1_5:126860483-126860582:+|nuORF	REV__ENST00000296666.12_1_5:126860483-126860582:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1010.9939575195312	1	1010.55571	1009.54843	-0.029049	-2.9356E-05	0.27266	0.00027554	0.24361	0.00024618	1010.5560462056447	129.1	0.15306	129.34	129.26	129.42	0.23946					4	2	2	0	0	0	0.69557	1	50701	50701		36.127	2.0246	1	6984600	+		29867	23391	21470	21636	29220	29220					0.044041262170935624
LFDRASVRV	9	Unmodified	_LFDRASVRV_					0	0	0			REV__nc|ENSG00000137070|Q14626-2|IL11RA	REV__nc|ENSG00000137070|Q14626-2|IL11RA	MULTI-MSMS	A375_MHC_IP_R1	1	533.3417358398438	2	531.806365	1061.59818	-0.52701	-0.00028027	0.24746	0.0001316	-0.27955	-0.00014867	531.8063392443546	51.213	0.91392	51.213	50.864	51.778	0					48	17	6	0	0	0	0.6898	1	18141	18141		7.9102	1.187	1	7273200	+		29868	18983	21471	21637	29221	29221					0.06984253945756791
LFDRLIAQE	9	Unmodified	_LFDRLIAQE_					0	0	0		PSKH2|p.G153E|1|0.21|ENSG00000147613|chr8:86064359-86064359|C/T|missense_variant	PSKH2|p.G153E|1|0.21|ENSG00000147613|chr8:86064359-86064359|C/T|missense_variant	PSKH2|p.G153E|1|0.21|ENSG00000147613|chr8:86064359-86064359|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	368.92425537109375	3	368.873113	1103.59751	-0.56961	-0.00021011	0.41459	0.00015293	-0.15501	-5.718E-05	368.873185421986	29.078	1.054	29.776	29.584	30.638	0.69872					39	20	2	0	0	0	0.51106	1	10105	10105		13.615	0	1	21451000			29869	15243	21472	21638	29222	29222					0.04985414506040797
LFDSNGDFY	9	Unmodified	_LFDSNGDFY_					0	0	0			REV__tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1	REV__tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	539.630126953125	2	539.229822	1076.44509	-0.84212	-0.0004541	0.54559	0.0002942	-0.29653	-0.0001599	539.2305067348577	76.019	0.96736	76.759	76.282	77.25	0.74052					32	18	3	0	0	0	0.4867	2	28845	28845;28884		20.454	4.6854	1	2918700	+		29870	28830	21473	21639	29223;29224	29223					-0.09007405961369841
LFDTIAMSLI	10	Unmodified	_LFDTIAMSLI_					0	0	0			REV__nc|ENSG00000146378|Q9P1P5-2|TAAR2	REV__nc|ENSG00000146378|Q9P1P5-2|TAAR2	MULTI-MSMS	A375_MHC_IP_R1	1	562.7066040039062	2	562.307018	1122.59948	-0.29623	-0.00016657	0.0046957	2.6404E-06	-0.29154	-0.00016393	562.3069954811306	110.74	1.9897	110.74	109.78	111.77	0					94	38	3	0	0	0	0.45919	1	40578	40578		30.637	5.2372	1	3370800	+		29871	19531	21474	21640	29225	29225					0.04308707199652417
LFDTIAMSLI	10	Unmodified	_LFDTIAMSLI_					0	0	0			REV__nc|ENSG00000146378|Q9P1P5-2|TAAR2	REV__nc|ENSG00000146378|Q9P1P5-2|TAAR2	MULTI-MSMS	A375_MHC_IP_R2	2	562.706787109375	2	562.307018	1122.59948	-0.42409	-0.00023847	0.0017009	9.564E-07	-0.42239	-0.00023751	562.3069557571092	109.95	2.3438	110.7	109.52	111.86	0.74684					86	45	3	0	0	0	0.53946	1	41527	41527		25.399	0	1	3205700	+		29872	19531	21474	21640	29226	29226					0.04308707199652417
LFDVQRKNIP	10	Unmodified	_LFDVQRKNIP_					0	0	0		ENST00000567330.1_1_16:75743035-75743521:-|nuORF	ENST00000567330.1_1_16:75743035-75743521:-|nuORF	ENST00000567330.1_1_16:75743035-75743521:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	410.9719543457031	3	410.571545	1228.69281	-0.10478	-4.3022E-05	0.77005	0.00031616	0.66527	0.00027314	410.5718407059351	51.163	0.60723	51.916	51.512	52.119	0.75313					18	11	2	0	0	0	0.7086	1	19291	19291		8.4443	0.28878	1	1970000			29873	13569	21475	21641	29227	29227					0.08760767697094707
LFDWTDEY	8	Unmodified	_LFDWTDEY_					0	0	0			REV__ENST00000380009.8_1_5:94890945-94903636:+|nuORF	REV__ENST00000380009.8_1_5:94890945-94903636:+|nuORF	MSMS	A375_MHC_IP_R2	2	544.6686401367188	2	544.732197	1087.44984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.119	1	55.869	55.369	56.369	0.75075								0	0	0	0.16876	1	20815	20815		20.871	2.7362	1		+		29874	24208	21476	21642	29228	29228					-0.09038521818615664
LFDYDQFN	8	Unmodified	_LFDYDQFN_					0	0	0			REV__tr|U7SZK3|U7SZK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00782PE=4SV=1	REV__tr|U7SZK3|U7SZK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00782PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	531.6329956054688	2	531.232364	1060.45018	-0.61403	-0.00032619	0.92732	0.00049262	0.31329	0.00016643	531.2328169090873	103.51	0.71236	104.27	104.04	104.75	0.76428					20	13	2	0	0	0	0.74945	1	39215	39215		20.454	2.3073	1	1811100	+		29875	28651	21477	21643	29229	29229					-0.07763102098738273
LFDYDQFN	8	Unmodified	_LFDYDQFN_					0	0	0			REV__tr|U7SZK3|U7SZK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00782PE=4SV=1	REV__tr|U7SZK3|U7SZK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00782PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	531.232364	1060.45018	-0.56904	-0.00030229	1.404	0.00074583	0.83493	0.00044354	531.2329871329931	104.26	0.71277	104.26	103.98	104.69	0	-0.0037539	0.00024164	NaN	20.454	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2193600	+		29876	28651	21477	21643							-0.07763102098738273
LFDYDQFN	8	Unmodified	_LFDYDQFN_					0	0	0			REV__tr|U7SZK3|U7SZK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00782PE=4SV=1	REV__tr|U7SZK3|U7SZK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00782PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	531.232364	1060.45018	-0.61403	-0.00032619	0.92732	0.00049262	0.31329	0.00016643	531.2328169090873	103.51	0.71236	104.27	104.04	104.75	0.76428	0.0037539	-0.00026478	NaN	20.454	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1811100	+		29877	28651	21477	21643							-0.07763102098738273
LFEELTAEVY	10	Unmodified	_LFEELTAEVY_					0	0	0			REV__ENSG00000169087|ENST00000306103|HSPBAP1	REV__ENSG00000169087|ENST00000306103|HSPBAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	405.2801513671875	3	405.204417	1212.59142	-0.22227	-9.0065E-05	-2.4963	-0.0010115	-2.7186	-0.0011016	405.2030162582851	42.668	0.20229	42.668	42.537	42.739	0					6	3	2	0	0	0	0.87163	1	14800	14800		12.175	1.2758	1	849370	+		29878	20905	21478	21644	29230	29230					-0.00637148516148045
LFEFFDRTETR	11	Unmodified	_LFEFFDRTETR_					0	0	0		nc|ENSG00000144191|Q16281-2|CNGA3;ENSG00000144191|ENST00000272602|CNGA3;nc|ENSG00000144191|Q16281-3|CNGA3	nc|ENSG00000144191|Q16281-2|CNGA3	nc|ENSG00000144191|Q16281-2|CNGA3	MSMS	A375_MHC_IP_R1	1	487.6347351074219	3	487.577136	1459.70958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.654	1	48.654	48.154	49.154	0								0	0	0	0.16172	1	17177	17177		9.7643	0.52048	1				29879	5468	21479	21645	29231	29231					-0.0018877620764214953
LFELKTFRL	9	Unmodified	_LFELKTFRL_					0	0	0		NLRC5|p.S1494F|1|0.34|ENSG00000140853|chr16:57067810-57067810|C/T|missense_variant	NLRC5|p.S1494F|1|0.34|ENSG00000140853|chr16:57067810-57067810|C/T|missense_variant	NLRC5|p.S1494F|1|0.34|ENSG00000140853|chr16:57067810-57067810|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	389.6358947753906	3	389.569253	1165.68593	0.70989	0.00027655	1.0361	0.00040362	1.746	0.00068017	389.5695829128683	69.495	0.40553	69.495	69.326	69.732	0					12	7	2	0	0	0	0.71902	1	25225	25225		5.2969	1.7098	1	2039100			29880	14999	21480	21646	29232	29232					0.10971454816535697
LFEMQPALP	9	Unmodified	_LFEMQPALP_					0	0	0		RLN2|p.S103F|1|0.54|ENSG00000107014|chr9:5300348-5300348|G/A|missense_variant	RLN2|p.S103F|1|0.54|ENSG00000107014|chr9:5300348-5300348|G/A|missense_variant	RLN2|p.S103F|1|0.54|ENSG00000107014|chr9:5300348-5300348|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	523.2021484375	2	523.272978	1044.5314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.28	1	132.28	131.78	132.78	0								0	0	0	0.1521	1	51003	51003		18.135	1.1927	1				29881	29083	21481	21647	29233	29233					0.01091882339642325
LFEPDRTASDF	11	Unmodified	_LFEPDRTASDF_					0	0	0			REV__nc|ENSG00000204084|P32019-4|INPP5B	REV__nc|ENSG00000204084|P32019-4|INPP5B	MULTI-MSMS	A375_MHC_IP_R1	1	649.7062377929688	2	649.306592	1296.59863	-0.41725	-0.00027093	0.0056526	3.6703E-06	-0.4116	-0.00026726	649.306722792959	64.98	0.50638	64.98	64.75	65.257	0					16	9	2	0	0	0	0.72801	1	23529	23529		10.8	3.1906	1	2688900	+		29882	22485	21482	21648	29234	29234					-0.03780415915730373
LFERKLLFE	9	Unmodified	_LFERKLLFE_					0	0	0			REV__ENST00000254657.7_1_2:239171664-239176756:-|nuORF	REV__ENST00000254657.7_1_2:239171664-239176756:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	399.3011779785156	3	398.900891	1193.68084	-0.21835	-8.7101E-05	0.63792	0.00025447	0.41957	0.00016737	398.90117570778307	53.428	0.50786	53.428	53.199	53.707	0					14	9	2	0	0	0	0.65623	1	19084	19084		23.79	23.79	1	2938500	+		29883	23141	21483	21649	29235	29235					0.09175150953888078
LFESFSGK	8	Unmodified	_LFESFSGK_					0	0	0		OSMR|p.E284K|1|0.29|ENSG00000145623|chr5:38886049-38886049|G/A|missense_variant	OSMR|p.E284K|1|0.29|ENSG00000145623|chr5:38886049-38886049|G/A|missense_variant	OSMR|p.E284K|1|0.29|ENSG00000145623|chr5:38886049-38886049|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	457.6644592285156	2	457.734543	913.454533	-0.1542	-7.0583E-05	0.57368	0.00026259	0.41948	0.00019201	457.7346921084541	105.22	0.25375	105.22	104.99	105.25	0					5	4	2	0	0	0	0.74466	1	38614	38614		21.747	4.8044	1	366670			29884	15099	21484	21650	29236	29236					-0.00565592885186561
LFEVVLGSA	9	Unmodified	_LFEVVLGSA_					0	0	0		ENST00000435590.1_1_21:46097057-46097849:-|nuORF	ENST00000435590.1_1_21:46097057-46097849:-|nuORF	ENST00000435590.1_1_21:46097057-46097849:-|nuORF	MSMS	A375_MHC_IP_R1	1	467.66259765625	2	467.765843	933.517133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.751	1	58.751	58.251	59.251	0								0	0	0	0.1499	1	21109	21109		21.747	1.293	1				29885	11913	21485	21651	29237	29237					0.04771553183002197
LFFAYKMNLRR	11	Unmodified	_LFFAYKMNLRR_					0	0	0			REV__ENST00000557491.1_1_14:89075566-89075752:+|nuORF	REV__ENST00000557491.1_1_14:89075566-89075752:+|nuORF	MSMS	A375_MHC_IP_R1	1	730.240234375	2	729.905556	1457.79656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.833	1	54.833	54.333	55.333	0								0	0	0	0.1629	1	19594	19594		3.5965	0.31518	1		+		29886	26126	21486	21652	29238	29238					0.08597351533080655
LFFCFLCY	8	Unmodified	_LFFCFLCY_					0	0	0		ENST00000561370.5_1_14:68048786-68054020:+|nuORF	ENST00000561370.5_1_14:68048786-68054020:+|nuORF	ENST00000561370.5_1_14:68048786-68054020:+|nuORF	MSMS	A375_MHC_IP_R1	1	528.1871337890625	2	528.240092	1054.46563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.257	1	51.257	50.757	51.757	0								0	0	0	0.16876	1	18189	18189		11.114	0.93107	1				29887	13509	21487	21653	29239	29239					-0.05942230106916213
LFFFKNHFAE	10	Unmodified	_LFFFKNHFAE_					0	0	0			REV__ENST00000367921.7_1_1:162602314-162602419:+|nuORF	REV__ENST00000367921.7_1_1:162602314-162602419:+|nuORF	MSMS	A375_MHC_IP_R1	1	433.6197509765625	3	433.888874	1298.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.72	1	141.72	141.22	142.22	0								0	0	0	0.15585	1	54390	54390		0.77653	0	1		+		29888	23982	21488	21654	29240	29240					0.007416937770358345
LFFFPLLYMIF	11	Unmodified	_LFFFPLLYMIF_					0	0	0		ENSG00000100652|ENST00000216540|SLC10A1	ENSG00000100652|ENST00000216540|SLC10A1	ENSG00000100652|ENST00000216540|SLC10A1	MULTI-SECPEP	A375_MHC_IP_R1	1	483.4721984863281	3	484.266294	1449.77705	-0.22403	-0.00010849	-1.5183	-0.00073524	-1.7423	-0.00084374	484.2651876379559	42.181	1.061	42.181	41.932	42.993	0					35	20	3	0	0	0	0.99493	1	14848	14848		8.4443	6.9892	1	7508900			29889	2209	21489	21655	29241	29241					0.0701558246962577
LFFHLRQY	8	Unmodified	_LFFHLRQY_					0	0	0			REV__nc|ENSG00000136206|Q8NFV5|SPDYE1	REV__nc|ENSG00000136206|Q8NFV5|SPDYE1	MSMS	A375_MHC_IP_R2	2	562.3204956054688	2	562.306001	1122.59745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.4	1	107.16	106.66	107.66	0.75977								0	0	0	0.16876	1	40219	40219		15.768	0	1		+		29890	18922	21490	21656	29242	29242					0.041054592966929704
LFFNVVGDTV	10	Unmodified	_LFFNVVGDTV_					0	0	0			REV__ENST00000553142.5_1_12:58020529-58021701:-|nuORF	REV__ENST00000553142.5_1_12:58020529-58021701:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	556.1951904296875	2	555.795132	1109.57571	-0.42329	-0.00023526	0.22434	0.00012469	-0.19895	-0.00011058	555.7950199151063	88.809	0.45805	88.809	88.561	89.019	0					13	8	2	0	0	0	0.72086	1	32652	32652		18.146	11.941	1	2847300	+		29891	18854	21491	21657	29243	29243					0.025306097574684827
LFFPRPINQL	10	Unmodified	_LFFPRPINQL_					0	0	0			REV__SLC26A11|p.G175R|1|0.25|ENSG00000181045|chr17:80225846-80225846|G/A|missense_variant	REV__SLC26A11|p.G175R|1|0.25|ENSG00000181045|chr17:80225846-80225846|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	622.8929443359375	2	622.861141	1243.70773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.84	1	113.57	113.07	114.07	0.72458								0	0	0	0.15332	1	42536	42536		10.074	0.6908	1		+		29892	21634	21492	21658	29244	29244					0.09562259565063869
LFFPSIKELFL	11	Unmodified	_LFFPSIKELFL_					0	0	0			REV__ENST00000302517.7_1_5:139063018-139063435:+|nuORF	REV__ENST00000302517.7_1_5:139063018-139063435:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	451.15399169921875	3	451.93208	1352.77441	-0.53571	-0.0002421	0.71418	0.00032276	0.17847	8.0657E-05	451.9325900285543	141.71	1.8445	141.71	140.44	142.29	0					60	35	3	0	0	0	1.001	1	54243	54243		1.4551	1.3603	1	910110	+		29893	23437	21493	21659	29245	29245					0.1121345033632224
LFFQAFRDLAG	11	Unmodified	_LFFQAFRDLAG_					0	0	0			REV__ENST00000478361.6_1_10:94240585-94297282:-|nuORF	REV__ENST00000478361.6_1_10:94240585-94297282:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	643.2396850585938	2	642.840405	1283.66626	-0.050009	-3.2148E-05	-0.55981	-0.00035987	-0.60982	-0.00039202	642.8400965298118	126.89	0.50783	126.89	126.71	127.22	0					17	9	3	0	0	0	0.16847	1	48559	48559		53.833	4.2785	1	39488000	+		29894	18101	21494	21660	29246	29246					0.03577078805756173
LFFQAFRDLAG	11	Unmodified	_LFFQAFRDLAG_					0	0	0			REV__ENST00000478361.6_1_10:94240585-94297282:-|nuORF	REV__ENST00000478361.6_1_10:94240585-94297282:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	642.840405	1283.66626	-0.68465	-0.00044012	-0.20387	-0.00013106	-0.88852	-0.00057117	642.8404603378143	126.56	0.70634	126.86	126.63	127.34	0.2951	-0.014849	0.00030092	NaN	53.833	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32955000	+		29895	18101	21494	21660							0.03577078805756173
LFFQLPAPS	9	Unmodified	_LFFQLPAPS_					0	0	0			REV__ENSG00000223611|ENST00000486479|SUPT20HL2	REV__ENSG00000223611|ENST00000486479|SUPT20HL2	MSMS	A375_MHC_IP_R2	2	510.18084716796875	2	510.28166	1018.54877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.68	1	130.9	130.4	131.4	0.2142								0	0	0	0.11948	1	51394	51394		36.044	5.8194	1		+		29896	22703	21495	21661	29247	29247					0.040235459369455384
LFFTAARRDY	10	Unmodified	_LFFTAARRDY_					0	0	0		ENST00000436639.6_1_6:109415651-109416020:-|nuORF	ENST00000436639.6_1_6:109415651-109416020:-|nuORF	ENST00000436639.6_1_6:109415651-109416020:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	630.7291870117188	2	630.330205	1258.64586	-0.87517	-0.00055165	-0.99019	-0.00062415	-1.8654	-0.0011758	630.3295177215671	128.67	1.1677	128.91	128.4	129.57	0.23946					32	22	2	0	0	0	0.70651	1	50580	50580		9.3831	1.2276	1	6523600			29897	11930	21496	21662	29248	29248					0.026879081459355803
LFFYSFMYQ	9	Unmodified	_LFFYSFMYQ_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-MSMS	A375_MHC_IP_R2	2	623.240966796875	2	623.286085	1244.55762	-0.57005	-0.00035531	-3.7821	-0.0023573	-4.3521	-0.0027126	623.7828417200304	43.633	0.7568	44.402	44.177	44.934	0.76927					27	14	3	0	0	0	0.25276	1	16433	16433		34.102	14.74	1	3491100			29898	2480	21497	21663	29249	29249					-0.054878484888831736
LFFYWFKYYVY	11	Unmodified	_LFFYWFKYYVY_					0	0	0		ENST00000505799.1_1_5:37379427-37381852:+|nuORF	ENST00000505799.1_1_5:37379427-37381852:+|nuORF	ENST00000505799.1_1_5:37379427-37381852:+|nuORF	MSMS	A375_MHC_IP_R1	1	547.0892944335938	3	546.939235	1637.79587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.69	1	101.69	101.19	102.19	0								0	0	0	0.16332	1	37370	37370		1.4551	0.94916	1				29899	12845	21498	21664	29250	29250					0.002488353650278441
LFGDCVQIYI	10	Unmodified	_LFGDCVQIYI_					0	0	0			REV__ENST00000420969.1_1_2:162363621-162363786:-|nuORF	REV__ENST00000420969.1_1_2:162363621-162363786:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	585.3186645507812	2	585.796817	1169.57908	-0.52059	-0.00030496	0.47315	0.00027717	-0.047438	-2.7789E-05	586.2985931922851	105.79	0.86541	106.55	106.12	106.99	0.75977					24	16	2	0	0	0	0.92051	1	39912	39912		12.532	5.2423	1	7402400	+		29900	24579	21499	21665	29251	29251					0.0010753653984920675
LFGHPLLV	8	Unmodified	_LFGHPLLV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-SECPEP	A375_MHC_IP_R1	1	448.6734313964844	2	448.273638	894.532724	-0.2404	-0.00010776	-0.23308	-0.00010448	-0.47348	-0.00021225	448.2734758472435	94.456	0.51061	94.456	94.191	94.701	0					14	9	2	0	0	0	0.37475	1	34761	34761		52.334	28.124	1	1199100			29901	2365	21500	21666	29252	29252					0.08123884490714772
LFGHPLLV	8	Unmodified	_LFGHPLLV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-MSMS	A375_MHC_IP_R2	2	448.6736145019531	2	448.273638	894.532724	-0.20109	-9.0144E-05	0.27864	0.00012491	0.077547	3.4762E-05	448.2735740626762	93.441	0.50767	94.185	93.956	94.463	0.74474					15	9	2	0	0	0	0.2379	1	35550	35550		64.081	31.627	1	1486900			29902	2365	21500	21666	29253	29253					0.08123884490714772
LFGIFFSSMA	10	Unmodified	_LFGIFFSSMA_					0	0	0			REV__ENST00000285968.10_1_7:135301915-135302371:+|nuORF	REV__ENST00000285968.10_1_7:135301915-135302371:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	560.6804809570312	2	560.280803	1118.54705	-0.58079	-0.00032541	0.36484	0.00020441	-0.21596	-0.000121	560.2809579265128	28.295	1.0102	28.295	27.684	28.694	0					29	19	2	0	0	0	0.62155	1	8530	8530		19.257	2.1441	1	9837700	+		29903	23338	21501	21667	29254	29254					-0.007478311433033014
LFGIFLDNG	9	Unmodified	_LFGIFLDNG_					0	0	0		tr|U7SQY2|U7SQY2_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01627PE=4SV=1	tr|U7SQY2|U7SQY2_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01627PE=4SV=1	tr|U7SQY2|U7SQY2_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01627PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	498.6790466308594	2	498.263468	994.512382	-0.83267	-0.00041489	-0.40373	-0.00020116	-1.2364	-0.00061606	498.26333247819804	51.951	0.45901	52.703	52.423	52.882	0.75225					14	8	2	0	0	0	0.46038	1	19480	19480		21.747	2.4897	1	2998700			29904	29604	21502	21668	29255	29255					0.014906690402312961
LFGKRNGSSY	10	Unmodified	_LFGKRNGSSY_					0	0	0			REV__ENST00000600000.1_1_19:8002866-8008536:-|nuORF	REV__ENST00000600000.1_1_19:8002866-8008536:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	565.1634521484375	2	564.793455	1127.57236	-0.39795	-0.00022476	-1.3251	-0.0007484	-1.723	-0.00097316	565.2940447899653	77.511	0.25443	77.511	77.436	77.69	0					5	4	2	0	0	0	0.91556	1	28328	28328		14.838	1.3304	1	1086100	+		29905	17355	21503	21669	29256	29256					0.0136735970349946
LFGLRIRVPPV	11	Unmodified	_LFGLRIRVPPV_					0	0	0		nc|ENSG00000143033|Q9Y483-2|MTF2;nc|ENSG00000143033|Q9Y483-3|MTF2;ENSG00000143033|ENST00000370298|MTF2	nc|ENSG00000143033|Q9Y483-2|MTF2	nc|ENSG00000143033|Q9Y483-2|MTF2	MULTI-SECPEP	A375_MHC_IP_R2	2	634.2086181640625	2	633.905882	1265.79721	-0.84479	-0.00053552	-2.8807	-0.0018261	-3.7255	-0.0023616	633.9027035894698	75.086	0.15095	75.823	75.721	75.872	0.73752					4	2	2	0	0	0	0.99881	1	28509	28509		1.4819	0	1	802250			29906	5341	21504	21670	29257	29257					0.17494514244458514
LFGQSHWQ	8	Unmodified	_LFGQSHWQ_					0	0	0			REV__ZNF536|p.L1238F|2|0.36|ENSG00000198597|chr19:30549331-30549331|C/T|missense_variant	REV__ZNF536|p.L1238F|2|0.36|ENSG00000198597|chr19:30549331-30549331|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	501.6415710449219	2	501.743234	1001.47191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.281	1	69.016	68.516	69.516	0.73511								0	0	0	0.16876	1	25875	25875		14.582	3.4672	1		+		29907	29047	21505	21671	29258	29258					-0.028762525595311672
LFGYFYYF	8	Unmodified	_LFGYFYYF_					0	0	0			REV__tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1	REV__tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1	MSMS	A375_MHC_IP_R2	2	560.15087890625	2	560.262936	1118.51132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.81	1	127.07	126.57	127.57	0.26593								0	0	0	0.16876	1	49640	49640		17.087	4.555	1		+		29908	28689	21506	21672	29259	29259					-0.043195453286898555
LFHFGESTTGS	11	Unmodified	_LFHFGESTTGS_					0	0	0		ENSG00000196862|ENST00000408999|RGPD4	ENSG00000196862|ENST00000408999|RGPD4	ENSG00000196862|ENST00000408999|RGPD4	MULTI-MSMS	A375_MHC_IP_R1	1	592.1747436523438	2	591.774928	1181.5353	-0.17551	-0.00010386	-1.5505	-0.00091758	-1.7261	-0.0010214	591.7746597105308	43.244	0.66297	43.244	43.043	43.706	0					25	12	4	0	0	0	0.52598	1	15026	15026		29.082	6.3453	1	3157200			29909	9090	21507	21673	29260	29260					-0.048203566329675596
LFHFGESTTGS	11	Unmodified	_LFHFGESTTGS_					0	0	0		ENSG00000196862|ENST00000408999|RGPD4	ENSG00000196862|ENST00000408999|RGPD4	ENSG00000196862|ENST00000408999|RGPD4	MULTI-MSMS	A375_MHC_IP_R2	2	592.1741943359375	2	591.774928	1181.5353	-0.49977	-0.00029575	-1.9172	-0.0011345	-2.4169	-0.0014303	591.7744286320648	42.522	0.50777	43.294	43.116	43.623	0.7724					23	9	3	0	0	0	0.52598	1	15846	15846		29.082	1.4528	1	4752300			29910	9090	21507	21673	29261	29261					-0.048203566329675596
LFHGTTKDI	9	Unmodified	_LFHGTTKDI_					0	0	0			REV__nc|ENSG00000107815|Q96RR1-3|TWNK	REV__nc|ENSG00000107815|Q96RR1-3|TWNK	MULTI-SECPEP	A375_MHC_IP_R1	1	515.6533203125	2	516.279649	1030.54475	-0.13319	-6.8766E-05	0.4941	0.00025509	0.3609	0.00018633	516.2797788777839	69.249	0.40771	69.249	69.02	69.427	0					12	7	2	0	0	0	0.74651	1	25087	25087		8.5933	0	1	2935000	+		29911	17498	21508	21674	29262	29262					0.03069456443222407
LFHKAPSP	8	Unmodified	_LFHKAPSP_					0	0	0			REV__ENSG00000184828|ENST00000590800|ZBTB7C	REV__ENSG00000184828|ENST00000590800|ZBTB7C	MULTI-SECPEP	A375_MHC_IP_R2	2	448.1498718261719	2	448.75307	895.491587	-0.32968	-0.00014795	1.4182	0.00063643	1.0885	0.00048849	448.753410951648	77.569	0.30366	78.312	78.062	78.365	0.74293					8	5	2	0	0	0	0.972	1	29435	29435		4.756	0	1	696870	+		29912	21839	21509	21675	29263	29263					0.039661234512209376
LFHQNLLY	8	Unmodified	_LFHQNLLY_					0	0	0		ENST00000553597.5_1_15:25165166-25166312:+|nuORF	ENST00000553597.5_1_15:25165166-25166312:+|nuORF	ENST00000553597.5_1_15:25165166-25166312:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	525.2416381835938	2	524.284734	1046.55492	-0.36944	-0.00019369	0.47247	0.00024771	0.10304	5.4021E-05	524.285154258273	49.993	0.71571	49.993	49.692	50.408	0					25	13	3	0	0	0	0.77123	1	17762	17762		14.582	1.0738	1	2260500			29913	13403	21510	21676	29264	29264					0.03350064168489553
LFHVSAPTVL	10	Unmodified	_LFHVSAPTVL_					0	0	0			REV__ENST00000375446.4_1_9:95883958-95884504:-|nuORF	REV__ENST00000375446.4_1_9:95883958-95884504:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	542.1902465820312	2	542.313492	1082.61243	-0.69796	-0.00037851	-1.4964	-0.00081153	-2.1944	-0.00119	542.3125620612924	93.563	0.60995	94.308	94.006	94.616	0.74473					13	11	2	0	0	0	0.78945	1	35539	35539		25.399	0	1	1045700	+		29914	24130	21511	21677	29265	29265					0.07442906374035374
LFHWDVYT	8	Unmodified	_LFHWDVYT_					0	0	0			REV__nc|ENSG00000131471|Q16853-2|AOC3	REV__nc|ENSG00000131471|Q16853-2|AOC3	MULTI-SECPEP	A375_MHC_IP_R2	2	540.1574096679688	2	540.761092	1079.50763	-0.69004	-0.00037315	-0.97634	-0.00052797	-1.6664	-0.00090112	540.760600942905	136.06	0.15222	136.17	136.1	136.25	0.11134					4	2	2	0	0	0	0.972	1	53482	53482		5.7604	3.4577	1	450590	+		29915	18607	21512	21678	29266	29266					-0.028942151025376006
LFHWHLHFFQR	11	Unmodified	_LFHWHLHFFQR_					0	0	0			REV__ENSG00000221855|ENST00000408916|TAS2R41	REV__ENSG00000221855|ENST00000408916|TAS2R41	MSMS	A375_MHC_IP_R1	1	784.4271850585938	2	784.407112	1566.79967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.77	1	129.77	129.27	130.27	0								0	0	0	0.16297	1	49919	49919		3.2813	0	1		+		29916	22690	21513	21679	29267	29267					0.03894362702089893
LFIAERDVY	9	Unmodified	_LFIAERDVY_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	A375_MHC_IP_R1	1	563.700439453125	2	563.300581	1124.58661	-0.41566	-0.00023414	0.68504	0.00038588	0.26938	0.00015174	563.3007998669726	59.995	0.66121	59.995	59.701	60.363	0					24	12	3	0	0	0	0.65246	1	21570	21570		21.747	6.9084	1	7594400	+		29917	16376	21514	21680	29268	29268					0.029300121317419325
LFIDAFSPPI	10	Unmodified	_LFIDAFSPPI_					0	0	0			REV__CON__Q1RMK2	REV__CON__Q1RMK2	MULTI-SECPEP	A375_MHC_IP_R1	1	560.4072875976562	2	560.307875	1118.6012	-0.44865	-0.00025138	-2.1594	-0.00121	-2.6081	-0.0014613	560.8079639633534	100.64	0.8616	100.64	100.18	101.04	0					25	16	3	0	0	0	0.85226	1	36919	36919		14.838	0	1	1267000	+	+	29918	15872	21515	21681	29269	29269					0.046640842798979065
LFIDDKGIL	9	Unmodified	_LFIDDKGIL_					0	0	0		nc|ENSG00000165181|Q5VXU9-2|SHOC1;nc|ENSG00000165181|Q5VXU9-3|SHOC1;nc|ENSG00000165181|Q5VXU9|SHOC1;ENSG00000165181|ENST00000682961|SHOC1	nc|ENSG00000165181|Q5VXU9-2|SHOC1	nc|ENSG00000165181|Q5VXU9-2|SHOC1	MULTI-MSMS	A375_MHC_IP_R2	2	517.7001953125	2	517.30005	1032.58555	-0.63393	-0.00032793	0.38235	0.00019779	-0.25158	-0.00013014	517.3000790591436	101.17	1.7815	101.93	101.65	103.43	0.76428					83	34	4	0	0	0	0.032333	1	38314	38314		72.968	0	1	36814000			29919	6923	21516	21682	29270	29270					0.07055797762859584
LFIDMHRC	8	Unmodified	_LFIDMHRC_					0	0	0			REV__ENSG00000172935|ENST00000309099|MRGPRF	REV__ENSG00000172935|ENST00000309099|MRGPRF	MSMS	A375_MHC_IP_R1	1	517.6873168945312	2	517.749147	1033.48374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.642	1	68.642	68.142	69.142	0								0	0	0	0.16876	1	24895	24895		10.183	0	1		+		29920	21181	21517	21683	29271	29271					-0.03166095132201008
LFIFGFCWL	9	Unmodified	_LFIFGFCWL_					0	0	0		ENSG00000135643|ENST00000258111|KCNMB4	ENSG00000135643|ENST00000258111|KCNMB4	ENSG00000135643|ENST00000258111|KCNMB4	MULTI-SECPEP	A375_MHC_IP_R1	1	382.2707214355469	3	382.533263	1144.57796	0.30989	0.00011854	-0.94815	-0.0003627	-0.63826	-0.00024416	382.5327091224746	50.307	0.91653	50.307	49.998	50.915	0					30	17	3	0	0	0	0.69507	1	17980	17980		13.906	0	1	2715200			29921	4701	21518	21684	29272	29272					0.011453669615775652
LFIGAAWGLYL	11	Unmodified	_LFIGAAWGLYL_					0	0	0			REV__ENSG00000228607|ENST00000453129|CLDN25	REV__ENSG00000228607|ENST00000453129|CLDN25	MSMS	A375_MHC_IP_R2	2	611.9305419921875	2	612.344792	1222.67503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.602	1	63.344	62.844	63.844	0.74263								0	0	0	0.1629	1	23728	23728		3.5965	0.60125	1		+		29922	22736	21519	21685	29273	29273					0.07260052442234155
LFIQKLQDL	9	Unmodified	_LFIQKLQDL_					0	0	0		ENST00000394662.2_1_1:89887573-89889825:+|nuORF;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117226|ENST00000370481|GBP3	ENST00000394662.2_1_1:89887573-89889825:+|nuORF	ENST00000394662.2_1_1:89887573-89889825:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	559.7339477539062	2	559.334424	1116.6543	-0.41638	-0.0002329	-0.38349	-0.0002145	-0.79987	-0.0004474	559.3343381486964	96.827	0.40581	96.827	96.63	97.036	0					13	7	2	0	0	0	0.064992	1	35604	35604		41.84	0	1	1050000			29923	3465	21520	21686	29274	29274					0.10063462062566941
LFIYLLIIRIK	11	Unmodified	_LFIYLLIIRIK_					0	0	0			REV__ENSG00000136854|ENST00000373299|STXBP1	REV__ENSG00000136854|ENST00000373299|STXBP1	MSMS	A375_MHC_IP_R2	2	702.9841918945312	2	702.970691	1403.92683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.27	1	104.04	103.54	104.54	0.76428								0	0	0	0.16353	1	39114	39114		0.35063	0.35063	1		+		29924	18963	21521	21687	29275	29275					0.2410227080374625
LFKARLRQA	9	Unmodified	_LFKARLRQA_					0	0	0			REV__ENST00000413145.1_1_9:6645964-6646075:+|nuORF	REV__ENST00000413145.1_1_9:6645964-6646075:+|nuORF	MSMS	A375_MHC_IP_R2	2	368.2770690917969	3	368.232975	1101.6771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.05	1	24.694	24.194	25.194	0.64368								0	0	0	0.15486	1	7836	7836		4.897	3.4151	1		+		29925	24493	21522	21688	29276	29276					0.1303252597069786
LFKFRGSLV	9	Unmodified	_LFKFRGSLV_					0	0	0			REV__ENSG00000150401|ENST00000478244|DCUN1D2	REV__ENSG00000150401|ENST00000478244|DCUN1D2	MULTI-SECPEP	A375_MHC_IP_R2	2	533.7163696289062	2	533.824027	1065.6335	-0.8256	-0.00044072	-0.017163	-9.1622E-06	-0.84276	-0.00044989	533.8240406696762	74.807	0.65847	75.545	75.214	75.872	0.73752					24	12	3	0	0	0	0.65246	1	28479	28479		15.847	15.847	1	5739300	+		29926	19712	21523	21689	29277	29277					0.10330916473549223
LFKNKKFLK	9	Unmodified	_LFKNKKFLK_					0	0	0		tr|U7T2T1|U7T2T1_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00448PE=4SV=1	tr|U7T2T1|U7T2T1_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00448PE=4SV=1	tr|U7T2T1|U7T2T1_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00448PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	389.31671142578125	3	389.253376	1164.7383	0.34995	0.00013622	0.77381	0.00030121	1.1238	0.00043742	389.2535226937025	49.92	1.4255	49.92	49.033	50.459	0					57	27	4	0	0	0	0.73141	1	17481	17481		4.1895	1.9067	1	34208000			29927	29944	21524	21690	29278	29278					0.16252037950107479
LFKQLLTGHDP	11	Unmodified	_LFKQLLTGHDP_					0	0	0			REV__nc|ENSG00000133863|Q9BXT5|TEX15	REV__nc|ENSG00000133863|Q9BXT5|TEX15	MULTI-MSMS	A375_MHC_IP_R1	1	423.6228332519531	3	423.571434	1267.69247	-0.22626	-9.5839E-05	-0.70426	-0.0002983	-0.93052	-0.00039414	423.5710360157229	24.368	0.55522	24.368	24.143	24.698	0					19	10	3	0	0	0	0.73439	1	7020	7020		4.7159	0.52642	1	6821000	+		29928	18738	21525	21691	29279	29279					0.0693334797724674
LFKVRYNKL	9	Unmodified	_LFKVRYNKL_					0	0	0		ENST00000511775.1_1_5:95297713-95654338:+|nuORF	ENST00000511775.1_1_5:95297713-95654338:+|nuORF	ENST00000511775.1_1_5:95297713-95654338:+|nuORF	MSMS	A375_MHC_IP_R1	1	394.2769470214844	3	394.244881	1179.71281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.419	1	60.419	59.919	60.919	0								0	0	0	0.15486	1	21752	21752		8.1555	1.9637	1				29929	12912	21526	21692	29280	29280					0.13014563427691428
LFLCCVSCF	9	Unmodified	_LFLCCVSCF_					0	0	0		TAS2R4|p.R76Gfs*24|1|0.2|ENSG00000127364|chr7:141778712-141778712|A/-|frameshift_variant	TAS2R4|p.R76Gfs*24|1|0.2|ENSG00000127364|chr7:141778712-141778712|A/-|frameshift_variant	TAS2R4|p.R76Gfs*24|1|0.2|ENSG00000127364|chr7:141778712-141778712|A/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	517.5586547851562	2	517.729035	1033.44352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.251	1	70.985	70.485	71.485	0.73421								0	0	0	0.15486	1	26630	26630		9.3474	2.9933	1				29930	29299	21527	21693	29281	29281					-0.07186777846982295
LFLCIRICV	9	Unmodified	_LFLCIRICV_					0	0	0			REV__ENST00000468303.5_1_1:24742648-24743062:-|nuORF	REV__ENST00000468303.5_1_1:24742648-24743062:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	540.251953125	2	540.308841	1078.60313	-0.58724	-0.00031729	1.0547	0.00056987	0.46746	0.00025257	540.3090855986276	102.38	0.85912	102.38	102.05	102.91	0					30	16	3	0	0	0	0.40041	1	37600	37600		30.225	0	1	1806500	+		29931	25080	21528	21694	29282	29282					0.06697098492509213
LFLFGPQI	8	Unmodified	_LFLFGPQI_					0	0	0		ENST00000602321.5_1_16:67685279-67685573:+|nuORF	ENST00000602321.5_1_16:67685279-67685573:+|nuORF	ENST00000602321.5_1_16:67685279-67685573:+|nuORF	MSMS	A375_MHC_IP_R2	2	467.6735534667969	2	467.773471	933.53239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.367	1	68.103	67.603	68.603	0.73631								0	0	0	0.16876	1	25522	25522		32.117	0	1				29932	13879	21529	21695	29283	29283					0.06296464770844068
LFLFQVLEAV	10	Unmodified	_LFLFQVLEAV_					0	0	0			REV__MAGEC3|p.L468F|1|0.56|ENSG00000165509|chrX:141897160-141897160|C/T|missense_variant	REV__MAGEC3|p.L468F|1|0.56|ENSG00000165509|chrX:141897160-141897160|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	589.7421875	2	589.844625	1177.6747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.58	1	141.58	141.08	142.08	0								0	0	0	0.15583	1	54340	54340		3.9444	2.2918	1		+		29933	26977	21530	21696	29284	29284					0.09296632722362119
LFLGCRQYL	9	Unmodified	_LFLGCRQYL_					0	0	0		ENSG00000179468|ENST00000350513|OR9A2	ENSG00000179468|ENST00000350513|OR9A2	ENSG00000179468|ENST00000350513|OR9A2	MULTI-SECPEP	A375_MHC_IP_R2	2	556.6489868164062	2	556.799694	1111.58484	-0.93698	-0.00052171	-2.3917	-0.0013317	-3.3287	-0.0018534	556.7981139498418	71.2	0.4569	71.934	71.553	72.01	0.73421					10	8	2	0	0	0	0.60012	1	26908	26908		18.135	4.6271	1	1334400			29934	8232	21531	21697	29285	29285					0.03350679842151294
LFLHATQKD	9	Unmodified	_LFLHATQKD_					0	0	0		ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF	ENSG00000092929|ENST00000207549|UNC13D	ENSG00000092929|ENST00000207549|UNC13D	MULTI-MSMS	A375_MHC_IP_R2	2	358.59765625	3	358.197708	1071.57129	-0.15049	-5.3905E-05	-0.19744	-7.0724E-05	-0.34793	-0.00012463	358.1976229106527	42.112	0.25652	42.884	42.757	43.014	0.7724					8	4	2	0	0	0	0.67152	1	15692	15692		9.544	0	1	2412500			29935	2015	21532	21698	29286	29286					0.03837145334568959
LFLHHHLF	8	Unmodified	_LFLHHHLF_					0	0	0		ENST00000498066.1_1_2:102484451-102486985:+|nuORF	ENST00000498066.1_1_2:102484451-102486985:+|nuORF	ENST00000498066.1_1_2:102484451-102486985:+|nuORF	MSMS	A375_MHC_IP_R1	1	532.2186279296875	2	532.295436	1062.57632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.924	1	75.924	75.424	76.424	0								0	0	0	0.16876	1	27667	27667		24.21	4.953	1				29936	12753	21533	21699	29287	29287					0.04753493987823276
LFLIIIIFWTF	11	Unmodified	_LFLIIIIFWTF_					0	0	0			REV__tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	REV__tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	713.8305053710938	2	713.430867	1424.84718	-0.94039	-0.0006709	0.4426	0.00031576	-0.49779	-0.00035514	713.4305336188311	148.99	2.2828	148.99	147.72	150	0					232	79	5	0	0	0	0.73897	1	56644	56644		0.35063	0	1	1604400	+		29937	28347	21534	21700	29288	29288					0.15175204129718622
LFLKIFFSL	9	Unmodified	_LFLKIFFSL_					0	0	0			REV__tr|U7SSB8|U7SSB8_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01676PE=3SV=1	REV__tr|U7SSB8|U7SSB8_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01676PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	564.2442626953125	2	564.346803	1126.67905	-0.34168	-0.00019283	-0.099757	-5.6297E-05	-0.44144	-0.00024912	564.3467291906317	85.223	0.56026	85.959	85.78	86.341	0.73601					20	10	3	0	0	0	0.50702	1	32367	32367		25.399	4.9457	1	4860600	+		29938	28421	21535	21701	29289	29289					0.12078141935967324
LFLKLKRSRL	10	Unmodified	_LFLKLKRSRL_					0	0	0			REV__ENSG00000196305|ENST00000443024|IARS1	REV__ENSG00000196305|ENST00000443024|IARS1	MSMS	A375_MHC_IP_R1	1	425.2962341308594	3	425.28708	1272.83941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.584	1	82.584	82.084	83.084	0								0	0	0	0.15438	1	30200	30200		6.6304	2.754	1		+		29939	22180	21536	21702	29290	29290					0.21390489652844735
LFLKLKRSRL	10	Unmodified	_LFLKLKRSRL_					0	0	0			REV__ENSG00000196305|ENST00000443024|IARS1	REV__ENSG00000196305|ENST00000443024|IARS1	MSMS	A375_MHC_IP_R2	2	425.29595947265625	3	425.28708	1272.83941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.741	1	82.484	81.984	82.984	0.74293								0	0	0	0.15583	1	31047	31047		1.9064	0	1		+		29940	22180	21536	21702	29291	29291					0.21390489652844735
LFLKNINV	8	Unmodified	_LFLKNINV_					0	0	0		nc|ENSG00000063176|Q9NRA0-3|SPHK2	nc|ENSG00000063176|Q9NRA0-3|SPHK2	nc|ENSG00000063176|Q9NRA0-3|SPHK2	MULTI-MSMS	A375_MHC_IP_R2	2	481.1974792480469	2	480.797478	959.580402	-0.48674	-0.00023403	-0.25499	-0.0001226	-0.74174	-0.00035662	480.79761757249565	92.96	1.5218	93.699	93.341	94.863	0.73902					68	29	4	0	0	0	0.24409	1	35513	35513		63.563	4.884	1	35669000			29941	14470	21537	21703	29292	29292					0.09899538690888221
LFLKRKFY	8	Unmodified	_LFLKRKFY_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	A375_MHC_IP_R1	1	557.9346923828125	2	557.84222	1113.66989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.485	1	72.485	71.985	72.985	0								0	0	0	0.16876	1	26371	26371		11.114	5.8838	1				29942	10883	21538	21704	29293	29293					0.1175979337026547
LFLLLLFLLLL	11	Unmodified	_LFLLLLFLLLL_					0	0	0			REV__ENST00000476663.1_1_6:32139072-32143632:-|nuORF	REV__ENST00000476663.1_1_6:32139072-32143632:-|nuORF	MSMS	A375_MHC_IP_R1	1	665.8131103515625	2	665.959261	1329.90397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.62	1	75.62	75.12	76.12	0								0	0	0	0.16353	1	27552	27552		0.35063	0	1		+		29943	21405	21539	21705	29294	29294					0.25221251686275536
LFLLLLKLLF	10	Unmodified	_LFLLLLKLLF_					0	0	0		ENST00000526343.5_1_11:102100776-102101010:+|nuORF	ENST00000526343.5_1_11:102100776-102101010:+|nuORF	ENST00000526343.5_1_11:102100776-102101010:+|nuORF	MSMS	A375_MHC_IP_R1	1	616.87158203125	2	616.922678	1231.8308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.65	1	100.65	100.15	101.15	0								0	0	0	0.15585	1	36993	36993		1.8442	0	1				29944	13082	21540	21706	29295	29295					0.22416122963636553
LFLLPFLTI	9	Unmodified	_LFLLPFLTI_					0	0	0			REV__OR51I2|p.P160L|1|0.47|ENSG00000187918|chr11:5453967-5453967|C/T|missense_variant	REV__OR51I2|p.P160L|1|0.47|ENSG00000187918|chr11:5453967-5453967|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	539.1895751953125	2	538.841354	1075.66815	-0.74545	-0.00040168	-2.8438	-0.0015324	-3.5892	-0.001934	538.8396194174155	68.309	0.20325	69.044	68.918	69.121	0.73511					5	3	2	0	0	0	0.62767	1	25871	25871		23.148	6.2061	1	908000	+		29945	27680	21541	21707	29296	29296					0.13334739561651077
LFLLPFLTI	9	Unmodified	_LFLLPFLTI_					0	0	0			REV__OR51I2|p.P160L|1|0.47|ENSG00000187918|chr11:5453967-5453967|C/T|missense_variant	REV__OR51I2|p.P160L|1|0.47|ENSG00000187918|chr11:5453967-5453967|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	538.841354	1075.66815	-0.2208	-0.00011897	-3.6558	-0.0019699	-3.8766	-0.0020889	538.8392925980386	69.301	0.25521	69.301	69.121	69.377	0	0.12835	-0.00011298	NaN	23.148	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	951990	+		29946	27680	21541	21707							0.13334739561651077
LFLLRVLLHW	10	Unmodified	_LFLLRVLLHW_					0	0	0		ABCA13|p.L4669F|1|0.46|ENSG00000179869|chr7:48520248-48520248|C/T|missense_variant	ABCA13|p.L4669F|1|0.46|ENSG00000179869|chr7:48520248-48520248|C/T|missense_variant	ABCA13|p.L4669F|1|0.46|ENSG00000179869|chr7:48520248-48520248|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	655.4315795898438	2	655.410801	1308.80705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.794	1	97.794	97.294	98.294	0								0	0	0	0.15398	1	35928	35928		7.9102	0.62092	1				29947	3	21542	21708	29297	29297					0.1649970224984827
LFLNVLFIGDY	11	Unmodified	_LFLNVLFIGDY_					0	0	0		ENST00000420881.6_1_X:99551074-99551185:-|nuORF	ENST00000420881.6_1_X:99551074-99551185:-|nuORF	ENST00000420881.6_1_X:99551074-99551185:-|nuORF	MSMS	A375_MHC_IP_R2	2	657.1510620117188	2	657.360639	1312.70673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.035	1	57.786	57.286	58.286	0.75015								0	0	0	0.16249	1	21564	21564		5.7319	0	1				29948	11732	21543	21709	29298	29298					0.06288000405515959
LFLNVRTQV	9	Unmodified	_LFLNVRTQV_					0	0	0		nc|ENSG00000172936|Q99836-2|MYD88;nc|ENSG00000172936|Q99836-5|MYD88;ENSG00000172936|ENST00000650905|MYD88;nc|ENSG00000172936|Q99836-6|MYD88;nc|ENSG00000172936|Q99836-4|MYD88;ENST00000460295.1_1_3:38180152-38181542:+|nuORF;nc|ENSG00000172936|Q99836-3|MYD88;ENST00000416282.2_1_3:38180152-38182096:+|nuORF	nc|ENSG00000172936|Q99836-2|MYD88	nc|ENSG00000172936|Q99836-2|MYD88	MULTI-MSMS	A375_MHC_IP_R2	2	545.8572998046875	2	545.324391	1088.63423	-0.70345	-0.00038361	-0.28945	-0.00015785	-0.9929	-0.00054145	545.3242600323885	79.169	0.55759	79.914	79.54	80.098	0.74474					21	10	3	0	0	0	0.32092	1	30015	30015		29.082	1.4528	1	4395000			29949	7748	21544	21710	29299	29299					0.09345711122591638
LFLPEKRTLWL	11	Unmodified	_LFLPEKRTLWL_					0	0	0		TENM1|p.P943L|1|0.56|ENSG00000009694|chrX:124523569-124523569|G/A|missense_variant	TENM1|p.P943L|1|0.56|ENSG00000009694|chrX:124523569-124523569|G/A|missense_variant	TENM1|p.P943L|1|0.56|ENSG00000009694|chrX:124523569-124523569|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	472.6834716796875	3	472.618495	1414.83366	-0.75955	-0.00035898	-0.23338	-0.0001103	-0.99293	-0.00046928	472.61835399679865	138.57	0.30228	138.57	138.46	138.76	0					8	5	2	0	0	0	0.73897	1	53306	53306		0.094841	0	1	1186800			29950	29323	21545	21711	29300	29300					0.14283346350521242
LFLPLSGSSL	10	Unmodified	_LFLPLSGSSL_					0	0	0			REV__nc|ENSG00000168060|Q9UQQ1-4|NAALADL1	REV__nc|ENSG00000168060|Q9UQQ1-4|NAALADL1	MULTI-MSMS	A375_MHC_IP_R2	2	517.5592041015625	2	517.30005	1032.58555	-0.63393	-0.00032793	0.38235	0.00019779	-0.25158	-0.00013014	517.3000790591436	101.17	1.7815	101.93	101.65	103.43	0.76428					83	34	4	0	0	0	0.55789	1	38259	38259		24.021	0	1	36814000	+		29951	27344	21546	21712	29301	29301					0.07055797762859584
LFLQAGPVV	9	Unmodified	_LFLQAGPVV_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	MULTI-MSMS	A375_MHC_IP_R1	1	472.3515930175781	2	472.284203	942.553853	-0.71698	-0.00033862	0.55399	0.00026164	-0.16299	-7.6975E-05	472.2846697677864	135.27	0.86362	135.27	134.98	135.84	0					33	16	4	0	0	0	0.75251	1	52229	52229		2.3027	0	1	1791000			29952	5375	21547	21713	29302	29302					0.08027849799566411
LFLQRFRYS	9	Unmodified	_LFLQRFRYS_					0	0	0			REV__ENST00000407075.3_1_22:40342850-40343159:+|nuORF	REV__ENST00000407075.3_1_22:40342850-40343159:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	615.72509765625	2	615.343115	1228.67168	-0.57067	-0.00035116	1.9176	0.00118	1.347	0.00082885	615.34631203073	83.472	0.30736	84.212	83.998	84.305	0.73962					7	5	2	0	0	0	0.6656	1	31735	31735		10.074	2.7847	1	1605000	+		29953	24450	21548	21714	29303	29303					0.06648802388235708
LFLRLVNVL	9	Unmodified	_LFLRLVNVL_					0	0	0			REV__SLC52A3|p.S458L|1|0.42|ENSG00000101276|chr20:761063-761063|G/A|missense_variant	REV__SLC52A3|p.S458L|1|0.42|ENSG00000101276|chr20:761063-761063|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	544.6192626953125	2	543.855327	1085.6961	-0.88202	-0.00047969	-0.11289	-6.1394E-05	-0.99491	-0.00054109	543.8553336732674	74.79	0.40685	75.528	75.264	75.671	0.73752					10	7	2	0	0	0	0.78753	1	28439	28439		7.9102	0	1	859130	+		29954	27998	21549	21715	29304	29304					0.1566806254174935
LFLRYERKKRY	11	Unmodified	_LFLRYERKKRY_					0	0	0		ENST00000530958.5_1_11:108094696-108094846:+|nuORF	ENST00000530958.5_1_11:108094696-108094846:+|nuORF	ENST00000530958.5_1_11:108094696-108094846:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	524.2158813476562	3	524.643815	1570.90962	-0.4232	-0.00022203	-1.6221	-0.00085101	-2.0453	-0.001073	524.9770000873764	104.76	0.30208	104.76	104.64	104.94	0					10	5	2	0	0	0	1.001	1	38522	38522		0.50596	0	1	1144400			29955	13159	21550	21716	29305	29305					0.14699743250639585
LFLSAPPCVRP	11	Unmodified	_LFLSAPPCVRP_					0	0	0		ENST00000251473.9_1_19:11475863-11476019:+|nuORF	ENST00000251473.9_1_19:11475863-11476019:+|nuORF	ENST00000251473.9_1_19:11475863-11476019:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	600.7319946289062	2	600.333901	1198.65325	-0.53481	-0.00032107	0.043151	2.5905E-05	-0.49166	-0.00029516	600.3338132898577	127.4	2.0247	127.67	126.55	128.58	0.26593					61	39	2	0	0	0	0.9889	1	49536	49536		12.241	2.1667	1	26832000			29956	10203	21551	21717	29306	29306					0.06186924421990625
LFLSLECVSL	10	Unmodified	_LFLSLECVSL_					0	0	0		ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	MULTI-SECPEP	A375_MHC_IP_R1	1	562.1401977539062	2	562.307018	1122.59948	-0.19094	-0.00010737	0.24976	0.00014044	0.058817	3.3073E-05	562.3071509002294	108.56	1.8782	108.56	107.9	109.78	0					83	36	4	0	0	0	0.38158	1	39809	39809		52.268	15.762	1	11551000			29957	8114	21552	21718	29307	29307					0.0430870719962968
LFLSLECVSL	10	Unmodified	_LFLSLECVSL_					0	0	0		ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	MULTI-MSMS	A375_MHC_IP_R2	2	562.31787109375	2	562.307018	1122.59948	-0.60275	-0.00033893	-0.20571	-0.00011567	-0.80847	-0.00045461	562.3068953456901	107.77	1.4795	108.53	107.9	109.37	0.75436					66	28	4	0	0	0	0.33603	1	40623	40623		37.974	0	1	9214200			29958	8114	21552	21718	29308	29308					0.0430870719962968
LFLSPMDEY	9	Unmodified	_LFLSPMDEY_					0	0	0		tr|U7STH8|U7STH8_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01352PE=3SV=1	tr|U7STH8|U7STH8_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01352PE=3SV=1	tr|U7STH8|U7STH8_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01352PE=3SV=1	MSMS	A375_MHC_IP_R1	1	557.7081909179688	2	557.759901	1113.50525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103	1	103	102.5	103.5	0								0	0	0	0.15486	1	37848	37848		13.508	0.97634	1				29959	29694	21553	21719	29309	29309					-0.0469643162250577
LFLSTRQFW	9	Unmodified	_LFLSTRQFW_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|201|2|anti-sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|201|2|anti-sense	MSMS	A375_MHC_IP_R2	2	599.220947265625	2	599.324391	1196.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.42	1	130.64	130.14	131.14	0.2142								0	0	0	0.15486	1	51280	51280		9.3474	2.6243	1		+		29960	26896	21554	21720	29310	29310					0.0437771112262908
LFLTFYIKKYT	11	Unmodified	_LFLTFYIKKYT_					0	0	0		ENSG00000167895|ENST00000318430|TMC8;nc|ENSG00000167895|Q8IU68-2|TMC8	ENSG00000167895|ENST00000318430|TMC8	ENSG00000167895|ENST00000318430|TMC8	MULTI-MSMS	A375_MHC_IP_R2	2	480.010498046875	3	479.611118	1435.81152	-0.49606	-0.00023792	-0.18086	-8.6743E-05	-0.67692	-0.00032466	479.61084513620256	132.87	1.2183	133.03	132.59	133.8	0.16487					70	23	4	0	0	0	0.73795	1	52265	52265		1.3296	0	1	17820000			29961	7234	21555	21721	29311	29311					0.11105121882042113
LFLTTAPLLH	10	Unmodified	_LFLTTAPLLH_					0	0	0		ENST00000482968.1_1_1:120282927-120286660:+|nuORF	ENST00000482968.1_1_1:120282927-120286660:+|nuORF	ENST00000482968.1_1_1:120282927-120286660:+|nuORF	MSMS	A375_MHC_IP_R1	1	375.94036865234375	3	375.893737	1124.65938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.197	1	49.197	48.697	49.697	0								0	0	0	0.15329	1	17391	17391		10.151	0.6066	1				29962	12534	21556	21722	29312	29312					0.10203765925166408
LFLVKKNLKKL	11	Unmodified	_LFLVKKNLKKL_					0	0	0			REV__tr|U7SSS7|U7SSS7_FUSNULysineexporterLysOfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01479PE=4SV=1	REV__tr|U7SSS7|U7SSS7_FUSNULysineexporterLysOfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01479PE=4SV=1	MSMS	A375_MHC_IP_R1	1	672.5066528320312	2	672.46049	1342.90643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.63	1	101.63	101.13	102.13	0								0	0	0	0.16353	1	37351	37351		0.35063	0	1		+		29963	28446	21557	21723	29313	29313					0.24869100143905598
LFMHEFKRFFK	11	Unmodified	_LFMHEFKRFFK_					0	0	0		ENSG00000112599|ENST00000230361|GUCA1B	ENSG00000112599|ENST00000230361|GUCA1B	ENSG00000112599|ENST00000230361|GUCA1B	MSMS	A375_MHC_IP_R2	2	510.6703186035156	3	510.607713	1528.80131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.666	1	67.402	66.902	67.902	0.73631								0	0	0	0.16332	1	25257	25257		1.4551	0.12547	1				29964	3097	21558	21724	29314	29314					0.05806235675822791
LFMVFCSVGSL	11	Unmodified	_LFMVFCSVGSL_					0	0	0			REV__nc|ENSG00000170540|Q15041-3|ARL6IP1	REV__nc|ENSG00000170540|Q15041-3|ARL6IP1	MULTI-SECPEP	A375_MHC_IP_R2	2	601.6971435546875	2	601.801045	1201.58754	-0.39169	-0.00023572	0.38552	0.000232	-0.006178	-3.7179E-06	601.8011235847456	101.42	0.60861	102.19	101.8	102.41	0.76429					16	11	2	0	0	0	0.95991	1	38409	38409		13.042	13.042	1	3512400	+		29965	21001	21559	21725	29315	29315					-0.005192328151906622
LFMVMFSI	8	Unmodified	_LFMVMFSI_					0	0	0		ENSG00000110628|ENST00000649076|SLC22A18;ENST00000498209.6_1_11:2937879-2942743:+|nuORF;ENST00000467719.5_1_11:2937762-2940985:+|nuORF	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	MULTI-SECPEP	A375_MHC_IP_R2	2	494.6556396484375	2	494.255742	986.496932	-0.72615	-0.0003589	-0.30411	-0.00015031	-1.0303	-0.00050921	494.25647176415924	49.948	0.61196	50.703	50.445	51.057	0.75406					25	11	3	0	0	0	0.82569	1	18757	18757		36.466	10.125	1	2579600			29966	2936	21560	21726	29316	29316					0.0031434292717449352
LFNEQLALI	9	Unmodified	_LFNEQLALI_					0	0	0			REV__ENSG00000079689|ENST00000377961|SCGN	REV__ENSG00000079689|ENST00000377961|SCGN	MULTI-SECPEP	A375_MHC_IP_R2	2	530.676513671875	2	530.8055	1059.59645	-0.54714	-0.00029042	-0.44374	-0.00023554	-0.99088	-0.00052597	530.8052256336315	67.882	0.45844	68.618	68.409	68.867	0.73511					14	8	2	0	0	0	0.50484	1	25700	25700		24.021	0	1	2284000	+		29967	16738	21561	21727	29317	29317					0.0690320013713972
LFNFILDERVC	11	Unmodified	_LFNFILDERVC_					0	0	0			REV__ENSG00000254585|ENST00000650528|MAGEL2	REV__ENSG00000254585|ENST00000650528|MAGEL2	MULTI-MSMS	A375_MHC_IP_R2	2	685.75341796875	2	684.852655	1367.69076	-0.46729	-0.00032002	-0.4769	-0.00032661	-0.94419	-0.00064663	684.8524905392478	138.11	0.25417	138.19	138.06	138.32	0.083969					13	4	4	0	0	0	0.72649	1	54174	54174		12.241	12.241	1	4652100	+		29968	22864	21562	21728	29318	29318					0.02161970896963794
LFNFILDERVC	11	Unmodified	_LFNFILDERVC_					0	0	0			REV__ENSG00000254585|ENST00000650528|MAGEL2	REV__ENSG00000254585|ENST00000650528|MAGEL2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	684.852655	1367.69076	-0.46729	-0.00032002	-0.4769	-0.00032661	-0.94419	-0.00064663	684.8524905392478	138.11	0.25417	138.19	138.06	138.32	0.083969	0.0062097	2.3109E-05	NaN	12.241	13	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4652100	+		29969	22864	21562	21728							0.02161970896963794
LFNINAKNVQ	10	Unmodified	_LFNINAKNVQ_					0	0	0			REV__ENST00000484760.1_1_10:79773365-79779077:-|nuORF	REV__ENST00000484760.1_1_10:79773365-79779077:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	581.2037353515625	2	580.824755	1159.63496	-0.21187	-0.00012306	0.86827	0.00050431	0.65639	0.00038125	580.8247022158654	77.449	0.40419	77.449	77.235	77.639	0					10	7	2	0	0	0	0.92957	1	28287	28287		3.2813	0	1	1547500	+		29970	25303	21563	21729	29319	29319					0.061525057716380616
LFNLWVTWL	9	Unmodified	_LFNLWVTWL_					0	0	0		ENST00000345617.7_1_2:240274519-240274585:-|nuORF	ENST00000345617.7_1_2:240274519-240274585:-|nuORF	ENST00000345617.7_1_2:240274519-240274585:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	596.7322998046875	2	596.331685	1190.64882	-0.47406	-0.0002827	1.5219	0.00090753	1.0478	0.00062484	596.3324545564145	129.22	1.2211	129.22	128.43	129.65	0					44	23	2	0	0	0	0.72985	1	49545	49545		4.3292	0.73274	1	10516000			29971	10907	21564	21730	29320	29320					0.061117832707623165
LFNMYFLKLKR	11	Unmodified	_LFNMYFLKLKR_					0	0	0		ENST00000379066.5_1_2:37543982-37544117:-|nuORF	ENST00000379066.5_1_2:37543982-37544117:-|nuORF	ENST00000379066.5_1_2:37543982-37544117:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	736.8262329101562	2	736.925958	1471.83736	-0.81281	-0.00059898	-0.85513	-0.00063017	-1.6679	-0.0012291	736.9255298657149	134.31	0.75928	134.31	134.12	134.88	0					19	14	2	0	0	0	0.73795	1	51978	51978		1.3295	0.13619	1	2040800			29972	11323	21565	21731	29321	29321					0.12031692852679043
LFNNPVSY	8	Unmodified	_LFNNPVSY_					0	0	0		BGN|p.P343S|1|0.51|ENSG00000182492|chrX:153508365-153508365|C/T|missense_variant	BGN|p.P343S|1|0.51|ENSG00000182492|chrX:153508365-153508365|C/T|missense_variant	BGN|p.P343S|1|0.51|ENSG00000182492|chrX:153508365-153508365|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	477.6396484375	2	477.239993	952.465432	-0.52206	-0.00024915	0.2758	0.00013162	-0.24626	-0.00011753	477.24010620631304	64.268	0.45461	64.268	63.99	64.444	0					15	8	2	0	0	0	0.7758	1	23259	23259		10.183	1.5901	1	1151300			29973	236	21566	21732	29322	29322					-0.01270190510899738
LFNNPVSY	8	Unmodified	_LFNNPVSY_					0	0	0		BGN|p.P343S|1|0.51|ENSG00000182492|chrX:153508365-153508365|C/T|missense_variant	BGN|p.P343S|1|0.51|ENSG00000182492|chrX:153508365-153508365|C/T|missense_variant	BGN|p.P343S|1|0.51|ENSG00000182492|chrX:153508365-153508365|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	477.5617980957031	2	477.239993	952.465432	-0.48529	-0.0002316	-0.3925	-0.00018732	-0.87779	-0.00041892	477.23979942467247	63.374	0.45853	64.114	63.885	64.344	0.74022					15	8	2	0	0	0	0.77702	1	24103	24103		5.7604	0.52976	1	1274700			29974	236	21566	21732	29323	29323					-0.01270190510899738
LFNNRMHW	8	Unmodified	_LFNNRMHW_					0	0	0			REV__MTERF1|p.H98Qfs*2|1|0.05|ENSG00000127989|chr7:91874500-91874501|-/C|frameshift_variant	REV__MTERF1|p.H98Qfs*2|1|0.05|ENSG00000127989|chr7:91874500-91874501|-/C|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	560.1958618164062	2	559.271635	1116.52872	-0.66605	-0.0003725	-0.88631	-0.00049569	-1.5524	-0.00086819	559.2710189884891	78.04	1.0691	78.783	78.216	79.285	0.74293					42	20	4	0	0	0	0.77603	1	29552	29552		9.3474	2.6243	1	4049100	+		29975	18437	21567	21733	29324	29324					-0.024885282746481607
LFNSKPELL	9	Unmodified	_LFNSKPELL_					0	0	0		CFAP74|p.P514L|1|0.1|ENSG00000142609|chr1:1964922-1964922|G/A|missense_variant	CFAP74|p.P514L|1|0.1|ENSG00000142609|chr1:1964922-1964922|G/A|missense_variant	CFAP74|p.P514L|1|0.1|ENSG00000142609|chr1:1964922-1964922|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	531.2051391601562	2	530.8055	1059.59645	-0.54261	-0.00028802	-0.67913	-0.00036049	-1.2217	-0.00064851	530.8051345835584	68.743	0.35474	68.743	68.565	68.92	0					11	6	2	0	0	0	0.59614	1	24945	24945		30.637	0	1	3225500			29976	377	21568	21734	29325	29325					0.0690320013713972
LFNVCAKA	8	Unmodified	_LFNVCAKA_					0	0	0			REV__nc|ENSG00000184887|Q96KE9-2|BTBD6	REV__nc|ENSG00000184887|Q96KE9-2|BTBD6	MSMS	A375_MHC_IP_R2	2	433.2850036621094	2	433.233656	864.452759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.43	1	136.54	136.04	137.04	0.11134								0	0	0	0.16876	1	53589	53589		0.79363	0	1		+		29977	21843	21569	21735	29326	29326					0.01511074825191372
LFPDDQIVF	9	Unmodified	_LFPDDQIVF_					0	0	0		ENST00000340020.10_1_1:222842510-222842603:-|nuORF	ENST00000340020.10_1_1:222842510-222842603:-|nuORF	ENST00000340020.10_1_1:222842510-222842603:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	547.68310546875	2	547.281857	1092.54916	-0.67564	-0.00036976	1.8647	0.0010205	1.189	0.00065073	547.2831478948481	84	0.75702	84	83.685	84.442	0					27	14	2	0	0	0	0.12259	1	30725	30725		63.563	0.99015	1	5104400			29978	10850	21570	21736	29327	29327					0.006589208661580415
LFPEEAGS	8	Unmodified	_LFPEEAGS_					0	0	0			REV__ENSG00000149798|ENST00000279249|CDC42EP2	REV__ENSG00000149798|ENST00000279249|CDC42EP2	MULTI-MSMS	A375_MHC_IP_R2	2	425.6035461425781	2	425.203076	848.391599	-0.078279	-3.3284E-05	0.55706	0.00023686	0.47878	0.00020358	425.20320931200627	89.594	0.76533	90.326	89.985	90.751	0.7318					29	14	3	0	0	0	0.77702	1	34052	34052		5.7604	0	1	5547000	+		29979	19698	21571	21737	29328	29328					-0.03866158673224618
LFPEEAGS	8	Unmodified	_LFPEEAGS_					0	0	0			REV__ENSG00000149798|ENST00000279249|CDC42EP2	REV__ENSG00000149798|ENST00000279249|CDC42EP2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	425.203076	848.391599	-0.078279	-3.3284E-05	0.55706	0.00023686	0.47878	0.00020358	425.20320931200627	89.594	0.76533	90.326	89.985	90.751	0.7318	0.050724	-0.00020112	NaN	5.7604	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5547000	+		29980	19698	21571	21737							-0.03866158673224618
LFPFLRLSLK	10	Unmodified	_LFPFLRLSLK_					0	0	0		ENST00000508366.5_1_5:81605958-81640198:+|nuORF;ENST00000514672.1_1_5:81605958-81614116:+|nuORF	ENST00000508366.5_1_5:81605958-81640198:+|nuORF	ENST00000508366.5_1_5:81605958-81640198:+|nuORF	MSMS	A375_MHC_IP_R1	1	617.711669921875	2	617.389534	1232.76451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.196	1	95.196	94.696	95.696	0								0	0	0	0.15508	1	34988	34988		4.3292	0	1				29981	12875	21572	21738	29329	29329					0.15744307121599377
LFPLLLCF	8	Unmodified	_LFPLLLCF_					0	0	0		ENST00000525776.1_2_11:233433-233568:-|nuORF	ENST00000525776.1_2_11:233433-233568:-|nuORF	ENST00000525776.1_2_11:233433-233568:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	483.6502380371094	2	483.280075	964.545597	-0.58422	-0.00028234	-0.49654	-0.00023997	-1.0808	-0.00052231	483.27982963944277	39.699	0.35507	39.699	39.541	39.896	0					12	6	2	0	0	0	0.95327	1	13572	13572		11.114	0	1	2908800			29982	13074	21573	21739	29330	29330					0.06190579558574427
LFPLLLLLLP	10	Unmodified	_LFPLLLLLLP_					0	0	0			REV__ENST00000556692.1_1_14:68159543-68162507:-|nuORF	REV__ENST00000556692.1_1_14:68159543-68162507:-|nuORF	MSMS	A375_MHC_IP_R1	1	576.380126953125	2	576.393754	1150.77295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.872	1	99.872	99.372	100.37	0								0	0	0	0.15585	1	36697	36697		1.8442	0	1		+		29983	16594	21574	21740	29331	29331					0.20359861038241434
LFPLYPFAL	9	Unmodified	_LFPLYPFAL_					0	0	0		ENST00000505031.6_1_12:133313703-133313853:-|nuORF	ENST00000505031.6_1_12:133313703-133313853:-|nuORF	ENST00000505031.6_1_12:133313703-133313853:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	542.7440795898438	2	540.810054	1079.60555	-0.93741	-0.00050696	0.47035	0.00025437	-0.46706	-0.00025259	540.8102215136338	137.31	0.92416	137.31	137.08	138	0					43	17	5	0	0	0	0.71416	1	52901	52901		9.3474	0	1	75700000			29984	12835	21575	21741	29332	29332					0.06893593493464323
LFPNREDYI	9	Unmodified	_LFPNREDYI_					0	0	0		nc|ENSG00000175606|Q9BUB7-2|TMEM70;ENSG00000175606|ENST00000312184|TMEM70	nc|ENSG00000175606|Q9BUB7-2|TMEM70	nc|ENSG00000175606|Q9BUB7-2|TMEM70	MULTI-SECPEP	A375_MHC_IP_R2	2	583.6781005859375	2	583.795663	1165.57677	-0.32471	-0.00018956	-1.5098	-0.00088141	-1.8345	-0.001071	583.7950946870808	109.54	0.25204	110.29	110.13	110.38	0.74684					6	4	2	0	0	0	0.76187	1	41353	41353		7.2892	0	1	520060			29985	7972	21576	21742	29333	29333					0.0006082412637624657
LFPPIDLVSI	10	Unmodified	_LFPPIDLVSI_					0	0	0			REV__nc|ENSG00000156687|Q6UXZ4-2|UNC5D	REV__nc|ENSG00000156687|Q6UXZ4-2|UNC5D	MULTI-SECPEP	A375_MHC_IP_R2	2	557.5776977539062	2	557.33135	1112.64815	-0.67737	-0.00037752	3.3717	0.0018791	2.6943	0.0015016	557.8336059531171	92.526	0.25303	93.265	93.038	93.291	0.73902					5	4	2	0	0	0	0.85226	1	35164	35164		10.074	5.7447	1	825940	+		29986	19992	21577	21743	29334	29334					0.09632943831024932
LFPPLYTF	8	Unmodified	_LFPPLYTF_					0	0	0			REV__nc|ENSG00000176236|Q8N326|RPP38-DT	REV__nc|ENSG00000176236|Q8N326|RPP38-DT	MULTI-MSMS	A375_MHC_IP_R2	2	499.2929382324219	2	499.273304	996.532055	-0.57764	-0.0002884	-0.11658	-5.8205E-05	-0.69422	-0.0003466	499.27381673670425	72.999	1.0183	73.735	73.022	74.041	0.73541					32	19	3	0	0	0	0.69448	1	27689	27689		36.466	12.446	1	1707300	+		29987	27374	21578	21744	29335	29335					0.03365045050986737
LFPPLYTF	8	Unmodified	_LFPPLYTF_					0	0	0			REV__nc|ENSG00000176236|Q8N326|RPP38-DT	REV__nc|ENSG00000176236|Q8N326|RPP38-DT	MULTI-SECPEP	A375_MHC_IP_R2	2	499.67340087890625	2	499.273304	996.532055	-0.57764	-0.0002884	-0.11658	-5.8205E-05	-0.69422	-0.0003466	499.27381673670425	72.999	1.0183	73.735	73.022	74.041	0.73541					32	19	3	0	0	0	0.82569	1	27717	27717		36.466	12.446	1	1707300	+		29988	27374	21578	21744	29336	29336					0.03365045050986737
LFPRDRAQV	9	Unmodified	_LFPRDRAQV_					0	0	0			REV__CDHR2|p.S1027F|2|0.27|ENSG00000074276|chr5:176589401-176589401|C/T|missense_variant	REV__CDHR2|p.S1027F|2|0.27|ENSG00000074276|chr5:176589401-176589401|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	550.6170654296875	2	551.311815	1100.60908	-0.53278	-0.00029373	-0.52212	-0.00028785	-1.0549	-0.00058158	551.8143468033817	77.539	0.50735	77.539	77.235	77.742	0					12	9	2	0	0	0	0.71541	1	28279	28279		7.2892	2.96	1	622140	+		29989	15624	21579	21745	29337	29337					0.06279656320020877
LFPSKGWQ	8	Unmodified	_LFPSKGWQ_					0	0	0		ENST00000471517.5_1_19:38845366-38853372:+|nuORF;ENST00000412458.6_1_19:38845366-38860119:+|nuORF;ENSG00000099338|ENST00000409235|CATSPERG	ENST00000471517.5_1_19:38845366-38853372:+|nuORF	ENST00000471517.5_1_19:38845366-38853372:+|nuORF	MSMS	A375_MHC_IP_R2	2	481.6765441894531	2	481.758352	961.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.799	1	55.549	55.049	56.049	0.75075								0	0	0	0.16876	1	20688	20688		38.151	3.7495	1				29990	2073	21580	21746	29338	29338					0.019861061056644758
LFPSPPRHR	9	Unmodified	_LFPSPPRHR_					0	0	0		ENST00000496594.5_1_9:130883426-130884979:-|nuORF	ENST00000496594.5_1_9:130883426-130884979:-|nuORF	ENST00000496594.5_1_9:130883426-130884979:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	369.2889404296875	3	369.545442	1105.6145	0.42749	0.00015798	-1.5398	-0.00056902	-1.1123	-0.00041105	369.5448070716161	43.365	0.30487	44.137	43.977	44.282	0.7724					9	5	2	0	0	0	0.69507	1	16160	16160		9.544	3.3521	1	1393300			29991	12731	21581	21747	29339	29339					0.0659137990248837
LFPSPPRHR	9	Unmodified	_LFPSPPRHR_					0	0	0		ENST00000496594.5_1_9:130883426-130884979:-|nuORF	ENST00000496594.5_1_9:130883426-130884979:-|nuORF	ENST00000496594.5_1_9:130883426-130884979:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	369.545442	1105.6145	0.49762	0.00018389	-1.2234	-0.00045212	-0.72582	-0.00026822	369.54488236635706	44.293	0.56466	44.293	44.061	44.626	0	0.078041	7.8135E-05	NaN	9.544	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1518400			29992	12731	21581	21747							0.0659137990248837
LFPSRSRS	8	Unmodified	_LFPSRSRS_					0	0	0		ENST00000296978.3_1_6:130686962-130687400:+|nuORF	ENST00000296978.3_1_6:130686962-130687400:+|nuORF	ENST00000296978.3_1_6:130686962-130687400:+|nuORF	MSMS	A375_MHC_IP_R1	1	475.1653137207031	2	475.264333	948.514114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.95	1	131.95	131.45	132.45	0								0	0	0	0.16876	1	50878	50878		12.532	1.4171	1				29993	10512	21582	21748	29340	29340					0.037797228488557266
LFPVTRLIRVM	11	Unmodified	_LFPVTRLIRVM_					0	0	0			REV__ENST00000511500.1_1_5:119016267-119016600:+|nuORF	REV__ENST00000511500.1_1_5:119016267-119016600:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	672.8087158203125	2	672.91285	1343.81115	-0.66572	-0.00044797	-4.2457	-0.002857	-4.9114	-0.0033049	672.9097793421304	133.02	0.30464	133.19	133.04	133.35	0.16487					8	5	2	0	0	0	0.72877	1	52364	52364		10.074	3.8681	1	1641500	+		29994	20100	21583	21749	29341	29341					0.15299423681199187
LFQARQSQI	9	Unmodified	_LFQARQSQI_					0	0	0			REV__nc|ENSG00000169247|Q8TF17-5|SH3TC2	REV__nc|ENSG00000169247|Q8TF17-5|SH3TC2	MULTI-SECPEP	A375_MHC_IP_R2	2	545.1643676757812	2	545.803823	1089.59309	-1.4689	-0.00080175	1.2741	0.00069541	-0.19483	-0.00010634	545.8044364859165	37.005	0.30228	37.776	37.615	37.917	0.7709					9	5	2	0	0	0	0.50484	1	13541	13541		24.021	7.0783	1	1784800	+		29995	20921	21584	21750	29342	29342					0.05187950083131909
LFQDHPSEY	9	Unmodified	_LFQDHPSEY_					0	0	0		ENST00000256447.5_2_5:66492527-66492614:-|nuORF	ENST00000256447.5_2_5:66492527-66492614:-|nuORF	ENST00000256447.5_2_5:66492527-66492614:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	568.7154541015625	2	568.256371	1134.49819	-0.225	-0.00012786	1.7144	0.0009742	1.4894	0.00084634	568.2554628187828	72.665	0.30515	72.665	72.474	72.779	0					12	5	3	0	0	0	0.62719	1	26389	26389		13.508	0.97634	1	1019500			29996	10240	21585	21751	29343	29343					-0.06368028178712848
LFQEKNHLF	9	Unmodified	_LFQEKNHLF_					0	0	0		ENST00000262605.8_1_20:43118476-43118572:+|nuORF	ENST00000262605.8_1_20:43118476-43118572:+|nuORF	ENST00000262605.8_1_20:43118476-43118572:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	392.9451904296875	3	392.545108	1174.61349	0.31202	0.00012248	-0.04581	-1.7983E-05	0.26621	0.0001045	392.54514700078744	69.002	0.60896	69.002	68.666	69.275	0					20	11	3	0	0	0	0.78753	1	25039	25039		4.897	0	1	1710000			29997	10309	21586	21752	29344	29344					0.0331712074294046
LFQGRQREEKL	11	Unmodified	_LFQGRQREEKL_					0	0	0			REV__TTLL6|p.E449K|1|0.2|ENSG00000170703|chr17:48789986-48789986|C/T|missense_variant	REV__TTLL6|p.E449K|1|0.2|ENSG00000170703|chr17:48789986-48789986|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	468.4967041015625	3	468.596642	1402.7681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.564	1	76.305	75.805	76.805	0.74052								0	0	0	0.16302	1	28685	28685		1.2148	0	1		+		29998	28927	21587	21753	29345	29345					0.08282325157483683
LFQLARLDE	9	Unmodified	_LFQLARLDE_					0	0	0			REV__PTGDR|p.R310Q|1|0.17|ENSG00000168229|chr14:52274813-52274813|G/A|missense_variant	REV__PTGDR|p.R310Q|1|0.17|ENSG00000168229|chr14:52274813-52274813|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	369.2586364746094	3	368.873113	1103.59751	-0.56961	-0.00021011	0.41459	0.00015293	-0.15501	-5.718E-05	368.873185421986	29.078	1.054	29.776	29.584	30.638	0.69872					39	20	2	0	0	0	0.55471	1	10085	10085		12.175	0	1	21451000	+		29999	27856	21588	21754	29346	29346					0.0498541450601806
LFQLQRLRKGQ	11	Unmodified	_LFQLQRLRKGQ_					0	0	0		ENST00000523714.5_1_5:150480858-150480939:-|nuORF	ENST00000523714.5_1_5:150480858-150480939:-|nuORF	ENST00000523714.5_1_5:150480858-150480939:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	462.17340087890625	3	462.949127	1385.82555	-0.42153	-0.00019515	4.4025	0.0020381	3.981	0.001843	463.2848245177183	134.79	0.5058	134.92	134.7	135.2	0.13899					13	9	2	0	0	0	0.99681	1	53034	53034		7.0371	0.41363	1	1499200			30000	13048	21589	21755	29347	29347					0.1480721215370977
LFQLTFRK	8	Unmodified	_LFQLTFRK_					0	0	0			REV__ENST00000498780.5_1_2:201862166-201888732:-|nuORF	REV__ENST00000498780.5_1_2:201862166-201888732:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	351.94647216796875	3	351.54656	1051.61785	-0.25422	-8.937E-05	-0.11243	-3.9524E-05	-0.36665	-0.00012889	351.5464664210911	32.19	0.30557	32.927	32.806	33.112	0.73691					12	5	3	0	0	0	0.77703	1	11481	11481		5.7319	0	1	2191000	+		30001	19935	21590	21756	29348	29348					0.09410629956482808
LFQNESGLKY	10	Unmodified	_LFQNESGLKY_					0	0	0		PRKD3|p.S454L|1|0.38|ENSG00000115825|chr2:37275780-37275780|G/A|missense_variant	PRKD3|p.S454L|1|0.38|ENSG00000115825|chr2:37275780-37275780|G/A|missense_variant	PRKD3|p.S454L|1|0.38|ENSG00000115825|chr2:37275780-37275780|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	600.2084350585938	2	599.808771	1197.60299	-0.36989	-0.00022186	0.45133	0.00027071	0.081443	4.885E-05	599.8087756050527	79.65	0.35677	79.65	79.522	79.879	0					10	6	2	0	0	0	0.90144	1	29112	29112		18.373	8.8291	1	1747000			30002	15230	21591	21757	29349	29349					0.01209093297848085
LFQPTEEIW	9	Unmodified	_LFQPTEEIW_					0	0	0			REV__nc|ENSG00000135048|Q9UHN6-2|CEMIP2	REV__nc|ENSG00000135048|Q9UHN6-2|CEMIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	582.1925048828125	2	581.792589	1161.57063	-0.42961	-0.00024994	-0.77545	-0.00045115	-1.2051	-0.00070109	581.7921795434565	106.96	0.81219	107.72	107.34	108.15	0.75977					27	15	3	0	0	0	0.71541	1	40410	40410		11.64	5.9084	1	4150100	+		30003	27237	21592	21758	29350	29350					-0.003696941051430258
LFQPWNHPTL	10	Unmodified	_LFQPWNHPTL_					0	0	0		ENST00000582436.5_1_17:27253816-27277966:-|nuORF	ENST00000582436.5_1_17:27253816-27277966:-|nuORF	ENST00000582436.5_1_17:27253816-27277966:-|nuORF	MSMS	A375_MHC_IP_R2	2	626.6927490234375	2	626.827298	1251.64004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.559	1	90.291	89.791	90.791	0.7318								0	0	0	0.15417	1	34080	34080		7.2892	0.56607	1				30004	13691	21593	21759	29351	29351					0.024288096342615972
LFQRLAAL	8	Unmodified	_LFQRLAAL_					0	0	0		nc|ENSG00000138964|Q9HBI0-3|PARVG;nc|ENSG00000138964|Q9HBI0-2|PARVG;ENSG00000138964|ENST00000444313|PARVG	nc|ENSG00000138964|Q9HBI0-3|PARVG	nc|ENSG00000138964|Q9HBI0-3|PARVG	MULTI-SECPEP	A375_MHC_IP_R1	1	466.6894836425781	2	466.28982	930.565087	-0.12626	-5.8872E-05	-0.17166	-8.0041E-05	-0.29791	-0.00013891	466.2896819758083	88.718	0.91338	88.718	88.358	89.272	0					42	17	4	0	0	0	0.78043	1	32546	32546		40.449	0	1	17420000			30005	5045	21594	21760	29352	29352					0.09702671893705883
LFQRLAAL	8	Unmodified	_LFQRLAAL_					0	0	0		nc|ENSG00000138964|Q9HBI0-3|PARVG;nc|ENSG00000138964|Q9HBI0-2|PARVG;ENSG00000138964|ENST00000444313|PARVG	nc|ENSG00000138964|Q9HBI0-3|PARVG	nc|ENSG00000138964|Q9HBI0-3|PARVG	MULTI-SECPEP	A375_MHC_IP_R2	2	466.65838623046875	2	466.28982	930.565087	-0.55898	-0.00026065	0.24435	0.00011394	-0.31464	-0.00014671	466.2898753952638	87.642	0.65663	88.374	88.066	88.722	0.7318					29	12	3	0	0	0	0.54285	1	33354	33354		46.921	6.4723	1	17543000			30006	5045	21594	21760	29353	29353					0.09702671893705883
LFQRRAHRLT	10	Unmodified	_LFQRRAHRLT_					0	0	0		ENST00000424011.6_2_16:66647152-66647317:+|nuORF	ENST00000424011.6_2_16:66647152-66647317:+|nuORF	ENST00000424011.6_2_16:66647152-66647317:+|nuORF	MSMS	A375_MHC_IP_R1	1	433.28515625	3	433.258184	1296.75272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.37	1	140.37	139.87	140.87	0								0	0	0	0.15618	1	53917	53917		0.77653	0.27058	1				30007	11768	21595	21761	29354	29354					0.11621503150968238
LFQSRNITAV	10	Unmodified	_LFQSRNITAV_					0	0	0		ENSG00000206531|ENST00000488794|CD200R1L;nc|ENSG00000206531|Q6Q8B3|CD200R1L	ENSG00000206531|ENST00000488794|CD200R1L	ENSG00000206531|ENST00000488794|CD200R1L	MULTI-MSMS	A375_MHC_IP_R1	1	384.2867736816406	3	383.552262	1147.63496	0.077611	2.9768E-05	-0.41038	-0.0001574	-0.33277	-0.00012763	383.8864491352133	36.559	1.1139	36.559	35.982	37.096	0					59	20	4	0	0	0	0.71619	1	12055	12055		5.0475	0.3316	1	6722800			30008	9541	21596	21762	29355	29355					0.06704505771654112
LFQSRSEWPF	10	Unmodified	_LFQSRSEWPF_					0	0	0		ENST00000508798.5_1_4:99392465-99392573:-|nuORF	ENST00000508798.5_1_4:99392465-99392573:-|nuORF	ENST00000508798.5_1_4:99392465-99392573:-|nuORF	MSMS	A375_MHC_IP_R2	2	433.2848205566406	3	432.8839	1295.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.585	1	80.33	79.83	80.83	0.74474								0	0	0	0.15531	1	30203	30203		1.7423	0.52744	1				30009	12885	21597	21763	29356	29356					-0.006117980909493781
LFRAEFPP	8	Unmodified	_LFRAEFPP_					0	0	0			REV__ENSG00000283378|ENST00000636699|CNTNAP3C	REV__ENSG00000283378|ENST00000636699|CNTNAP3C	MULTI-MSMS	A375_MHC_IP_R2	2	489.1820068359375	2	488.766178	975.517802	-0.61763	-0.00030188	0.66517	0.00032511	0.047543	2.3237E-05	488.76707213542767	66.862	1.4756	67.599	67.29	68.766	0.73631					62	28	4	0	0	0	0.75322	1	25408	25408		19.439	1.304	1	3718800	+		30010	17462	21598	21764	29357	29357					0.02906392622696785
LFRASGNLV	9	Unmodified	_LFRASGNLV_					0	0	0		ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	MULTI-SECPEP	A375_MHC_IP_R2	2	489.1820068359375	2	488.782359	975.550165	-0.68451	-0.00033458	0.29288	0.00014316	-0.39163	-0.00019142	488.78246190381464	66.579	1.1716	67.316	66.932	68.104	0.73631					61	22	5	0	0	0	0.10103	1	25408	25408		62.573	14.227	1	97780000			30011	9360	21599	21765	29358	29358					0.06141180025701942
LFRHRKRHIRK	11	Unmodified	_LFRHRKRHIRK_					0	0	0		ENSG00000186496|ENST00000589332|ZNF396	ENSG00000186496|ENST00000589332|ZNF396	ENSG00000186496|ENST00000589332|ZNF396	MSMS	A375_MHC_IP_R1	1	773.9069213867188	2	773.986927	1545.9593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.95	1	125.95	125.45	126.45	0								0	0	0	0.16353	1	48033	48033		0.35063	0	1				30012	8753	21600	21766	29359	29359					0.208159157699356
LFRIKRGKI	9	Unmodified	_LFRIKRGKI_					0	0	0		tr|U7SJ15|U7SJ15_FUSNUDNAhelicaseRecQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02060PE=3SV=1	tr|U7SJ15|U7SJ15_FUSNUDNAhelicaseRecQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02060PE=3SV=1	tr|U7SJ15|U7SJ15_FUSNUDNAhelicaseRecQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02060PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	1130.48095703125	1	1130.75206	1129.74478	0.17443	0.00019724	-2.8388	-0.00321	-2.6643	-0.0030127	1131.7499715040638	117.96	0.30334	117.96	117.87	118.17	0					8	5	2	0	0	0	0.75764	1	43387	43387		1.8442	0.19162	1	7326200			30013	29441	21601	21767	29360	29360					0.18509975901520193
LFRILNPNK	9	Unmodified	_LFRILNPNK_					0	0	0		ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENSG00000213983|ENST00000397120|AP1G2;ENST00000554892.1_1_14:24028960-24029314:-|nuORF;ENST00000557391.1_1_14:24028960-24029655:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	371.9172058105469	3	372.229231	1113.66586	-0.19977	-7.4361E-05	1.0912	0.00040617	0.89142	0.00033181	372.22978613691316	37.112	0.30316	37.883	37.665	37.968	0.7709					8	5	2	0	0	0	0.81166	1	13523	13523		2.7352	0	1	772050			30014	9594	21602	21768	29361	29361					0.1135770387654702
LFRIRAPL	8	Unmodified	_LFRIRAPL_					0	0	0			REV__ENSG00000110321|ENST00000339995|EIF4G2	REV__ENSG00000110321|ENST00000339995|EIF4G2	MSMS	A375_MHC_IP_R2	2	493.47064208984375	2	493.318912	984.62327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.738	1	87.471	86.971	87.971	0.733								0	0	0	0.16876	1	32985	32985		6.3541	0	1		+		30015	17624	21603	21769	29362	29362					0.13034353538989762
LFRIRLVCT	9	Unmodified	_LFRIRLVCT_					0	0	0		ENSG00000151461|ENST00000357604|UPF2	ENSG00000151461|ENST00000357604|UPF2	ENSG00000151461|ENST00000357604|UPF2	MULTI-SECPEP	A375_MHC_IP_R2	2	560.7213134765625	2	560.836611	1119.65867	-0.67292	-0.0003774	1.4074	0.00078934	0.73452	0.00041194	560.8372685191069	129.25	0.70871	129.49	129.06	129.77	0.23946					16	13	2	0	0	0	0.80005	1	50735	50735		2.0598	2.0598	1	3861000			30016	5907	21604	21770	29363	29363					0.10362648004479524
LFRKVRRIMFH	11	Unmodified	_LFRKVRRIMFH_					0	0	0			REV__BEST3|p.S390F|1|0.21|ENSG00000127325|chr12:69655745-69655745|G/A|missense_variant	REV__BEST3|p.S390F|1|0.21|ENSG00000127325|chr12:69655745-69655745|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	752.34765625	2	751.94809	1501.88163	-0.76686	-0.00057664	0.17465	0.00013133	-0.59221	-0.00044531	751.9480661483369	133.18	1.2753	133.18	132.33	133.61	0					84	24	5	0	0	0	0.73924	1	51219	51219		0.35063	0.35063	1	54301000	+		30017	15509	21605	21771	29364	29364					0.15076141789563735
LFRKVRRIMFH	11	Unmodified	_LFRKVRRIMFH_					0	0	0			REV__BEST3|p.S390F|1|0.21|ENSG00000127325|chr12:69655745-69655745|G/A|missense_variant	REV__BEST3|p.S390F|1|0.21|ENSG00000127325|chr12:69655745-69655745|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	751.94809	1501.88163	-0.81272	-0.00061113	0.28351	0.00021318	-0.52921	-0.00039794	751.9481527855268	133.1	1.2709	133.27	132.43	133.7	0.16487	0.046111	6.635E-05	NaN	0.35063	89	24	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47338000	+		30018	15509	21605	21771							0.15076141789563735
LFRLTLARH	9	Unmodified	_LFRLTLARH_					0	0	0			REV__ENSG00000105647|ENST00000222254|PIK3R2	REV__ENSG00000105647|ENST00000222254|PIK3R2	MSMS	A375_MHC_IP_R2	2	375.9385986328125	3	376.232975	1125.6771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.989	1	62.732	62.232	63.232	0.74263								0	0	0	0.15486	1	23496	23496		2.7352	0.23671	1		+		30019	17399	21606	21772	29365	29365					0.11928525970688497
LFRNKMYRLFD	11	Unmodified	_LFRNKMYRLFD_					0	0	0			REV__ENST00000592042.5_1_17:74621414-74633692:-|nuORF	REV__ENST00000592042.5_1_17:74621414-74633692:-|nuORF	MSMS	A375_MHC_IP_R1	1	501.6417236328125	3	501.60274	1501.78639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.707	1	67.707	67.207	68.207	0								0	0	0	0.16297	1	24538	24538		1.3296	0	1		+		30020	16576	21607	21773	29366	29366					0.05556743807846942
LFRNKSKFT	9	Unmodified	_LFRNKSKFT_					0	0	0		NELL1|p.E86K|1|0.16|ENSG00000165973|chr11:20783751-20783751|G/A|missense_variant	NELL1|p.E86K|1|0.16|ENSG00000165973|chr11:20783751-20783751|G/A|missense_variant	NELL1|p.E86K|1|0.16|ENSG00000165973|chr11:20783751-20783751|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	380.60260009765625	3	380.888986	1139.64513	0.48415	0.00018441	0.34808	0.00013258	0.83223	0.00031699	380.8891826474321	52.022	0.45965	52.022	51.676	52.136	0					10	8	2	0	0	0	0.80332	1	18359	18359		2.4985	0.75621	1	733130			30021	14988	21608	21774	29367	29367					0.08089113496885147
LFRRSLLRRKL	11	Unmodified	_LFRRSLLRRKL_					0	0	0		chr12:65951415-65963245|386|86.93|0.63|7.11|+|1|HMGA2,HMGA2|1	chr12:65951415-65963245|386|86.93|0.63|7.11|+|1|HMGA2,HMGA2|1	chr12:65951415-65963245|386|86.93|0.63|7.11|+|1|HMGA2,HMGA2|1	MSMS	A375_MHC_IP_R1	1	729.6611328125	2	729.480611	1456.94667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.55	1	111.55	111.05	112.05	0								0	0	0	0.16353	1	40893	40893		0.35063	0.043601	1				30022	420	21609	21775	29368	29368					0.23647459587027697
LFRSLLLSL	9	Unmodified	_LFRSLLLSL_					0	0	0		ENST00000405995.5_1_9:134372150-134372429:+|nuORF	ENST00000405995.5_1_9:134372150-134372429:+|nuORF	ENST00000405995.5_1_9:134372150-134372429:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	355.4599914550781	3	354.562099	1060.66447	0.020552	7.2869E-06	0.015417	5.4662E-06	0.035969	1.2753E-05	354.5620510545119	47.454	0.91001	47.454	47.263	48.173	0					37	17	3	0	0	0	0.77154	1	16806	16806		0.26902	0	1	17236000			30023	11597	21610	21776	29369	29369					0.13656069787816705
LFRSSPLHLGG	11	Unmodified	_LFRSSPLHLGG_					0	0	0		ENST00000491614.5_1_10:12228313-12237825:-|nuORF	ENST00000491614.5_1_10:12228313-12237825:-|nuORF	ENST00000491614.5_1_10:12228313-12237825:-|nuORF	MSMS	A375_MHC_IP_R2	2	592.0636596679688	2	592.332747	1182.65094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.963	1	87.696	87.196	88.196	0.733								0	0	0	0.16124	1	33070	33070		12.241	2.8575	1				30024	12662	21611	21777	29370	29370					0.06692212008556453
LFRVRRHKFLW	11	Unmodified	_LFRVRRHKFLW_					0	0	0			REV__nc|ENSG00000065923|Q96T83|SLC9A7	REV__nc|ENSG00000065923|Q96T83|SLC9A7	MSMS	A375_MHC_IP_R2	2	519.9859008789062	3	519.980762	1556.92046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.393	1	81.137	80.637	81.637	0.74474								0	0	0	0.16358	1	30521	30521		0.08335	0	1		+		30025	16505	21612	21778	29371	29371					0.16427190415583937
LFSAGPHH	8	Unmodified	_LFSAGPHH_					0	0	0			REV__nc|ENSG00000168675|O15165-8|LDLRAD4	REV__nc|ENSG00000168675|O15165-8|LDLRAD4	MSMS	A375_MHC_IP_R2	2	433.285400390625	2	433.219395	864.424236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.76	1	106.52	106.02	107.02	0.75977								0	0	0	0.16876	1	39993	39993		2.8892	0	1		+		30026	20875	21613	21779	29372	29372					-0.01339906759733367
LFSAKQEREA	10	Unmodified	_LFSAKQEREA_					0	0	0			REV__ENST00000520571.1_1_8:142199090-142200632:+|nuORF	REV__ENST00000520571.1_1_8:142199090-142200632:+|nuORF	MSMS	A375_MHC_IP_R1	1	589.7125854492188	2	589.811845	1177.60914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.57	1	127.57	127.07	128.07	0								0	0	0	0.15479	1	48920	48920		5.2969	0.54088	1		+		30027	25702	21614	21780	29373	29373					0.027436115293767216
LFSCWFHLN	9	Unmodified	_LFSCWFHLN_					0	0	0		ENST00000374875.5_1_10:33468482-33468866:-|nuORF	ENST00000374875.5_1_10:33468482-33468866:-|nuORF	ENST00000374875.5_1_10:33468482-33468866:-|nuORF	MSMS	A375_MHC_IP_R2	2	583.62548828125	2	583.776219	1165.53789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.58	1	103.34	102.84	103.84	0.76428								0	0	0	0.15283	1	38863	38863		16.942	3.0362	1				30028	11263	21615	21781	29374	29374					-0.038261797089944594
LFSFFLRAQLL	11	Unmodified	_LFSFFLRAQLL_					0	0	0			REV__ENST00000379403.2_1_15:83686856-83686922:-|nuORF	REV__ENST00000379403.2_1_15:83686856-83686922:-|nuORF	MSMS	A375_MHC_IP_R1	1	677.795166015625	2	677.897723	1353.78089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.15	1	142.15	141.65	142.65	0								0	0	0	0.16337	1	54547	54547		1.1933	0	1		+		30029	24199	21616	21782	29375	29375					0.11815388287709538
LFSFFTRF	8	Unmodified	_LFSFFTRF_					0	0	0		ENST00000367388.4_1_1:197886553-197886649:+|nuORF	ENST00000367388.4_1_1:197886553-197886649:+|nuORF	ENST00000367388.4_1_1:197886553-197886649:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	532.6796264648438	2	532.781828	1063.5491	-0.37341	-0.00019894	-0.51304	-0.00027334	-0.88644	-0.00047228	532.7817724729049	69.993	2.0885	69.993	69.427	71.516	0					95	40	4	0	0	0	0.77028	1	25872	25872		14.838	4.0143	1	4859800			30030	11088	21617	21783	29376	29376					0.019869656568062055
LFSHLNDFSA	10	Unmodified	_LFSHLNDFSA_					0	0	0		nc|ENSG00000142675|Q969H4|CNKSR1;ENSG00000142675|ENST00000361530|CNKSR1	nc|ENSG00000142675|Q969H4|CNKSR1	nc|ENSG00000142675|Q969H4|CNKSR1	MULTI-SECPEP	A375_MHC_IP_R2	2	575.1401977539062	2	575.780013	1149.54547	-0.11743	-6.7613E-05	-0.42467	-0.00024452	-0.5421	-0.00031213	575.7797465163849	42.503	1.8753	43.276	42.91	44.786	0.7724					102	36	5	0	0	0	0.2729	1	15836	15836		65.235	25.278	1	216120000			30031	5325	21618	21784	29377	29377					-0.023317489077271603
LFSHVGDPFL	10	Unmodified	_LFSHVGDPFL_					0	0	0		UBASH3B|p.D83N|1|0.47|ENSG00000154127|chr11:122777055-122777055|G/A|missense_variant;ENSG00000154127|ENST00000284273|UBASH3B	UBASH3B|p.D83N|1|0.47|ENSG00000154127|chr11:122777055-122777055|G/A|missense_variant	UBASH3B|p.D83N|1|0.47|ENSG00000154127|chr11:122777055-122777055|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	566.67236328125	2	566.295299	1130.57605	-0.35478	-0.00020091	-0.042887	-2.4286E-05	-0.39767	-0.0002252	566.2952088435708	108.93	0.56158	109.68	109.37	109.93	0.74683					19	10	2	0	0	0	0.5761	1	41181	41181		34.102	0	1	2465900			30032	6060	21619	21785	29378	29378					0.015980294773271453
LFSHVGDPFL	10	Unmodified	_LFSHVGDPFL_					0	0	0		UBASH3B|p.D83N|1|0.47|ENSG00000154127|chr11:122777055-122777055|G/A|missense_variant;ENSG00000154127|ENST00000284273|UBASH3B	UBASH3B|p.D83N|1|0.47|ENSG00000154127|chr11:122777055-122777055|G/A|missense_variant	UBASH3B|p.D83N|1|0.47|ENSG00000154127|chr11:122777055-122777055|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	566.295299	1130.57605	-0.19517	-0.00011053	-0.0006985	-3.9555E-07	-0.19587	-0.00011092	566.2953122780243	109.94	0.60982	109.94	109.63	110.24	0	0.1291	2.7841E-05	NaN	34.102	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2629000			30033	6060	21619	21785							0.015980294773271453
LFSIHLISCP	10	Unmodified	_LFSIHLISCP_					0	0	0			REV__ENST00000525065.1_1_11:117062460-117063438:+|nuORF	REV__ENST00000525065.1_1_11:117062460-117063438:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	377.5747985839844	3	377.207327	1128.60015	-0.18931	-7.1409E-05	3.9301	0.0014825	3.7408	0.001411	377.20835601039227	38.489	0.25229	39.263	39.149	39.401	0.77451					5	4	2	0	0	0	0.70496	1	14225	14225		5.7834	0.88642	1	682510	+		30034	25764	21620	21786	29379	29379					0.04099546639349683
LFSIRQWTY	9	Unmodified	_LFSIRQWTY_					0	0	0		ENST00000602414.5_1_4:119200566-119200866:+|nuORF	ENST00000602414.5_1_4:119200566-119200866:+|nuORF	ENST00000602414.5_1_4:119200566-119200866:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	607.7219848632812	2	607.321848	1212.62914	-0.29873	-0.00018143	0.40431	0.00024554	0.10557	6.4117E-05	607.3219959753715	100.58	0.65941	100.58	100.18	100.84	0					24	12	3	0	0	0	0.055122	1	36928	36928		100.09	41.412	1	6254600			30035	13881	21621	21787	29380	29380					0.031334072599975116
LFSIRQWTY	9	Unmodified	_LFSIRQWTY_					0	0	0		ENST00000602414.5_1_4:119200566-119200866:+|nuORF	ENST00000602414.5_1_4:119200566-119200866:+|nuORF	ENST00000602414.5_1_4:119200566-119200866:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	607.7214965820312	2	607.321848	1212.62914	-0.15281	-9.2807E-05	0.11004	6.683E-05	-0.042773	-2.5977E-05	607.3217996949854	99.736	0.659	100.5	100.22	100.88	0.76278					26	12	3	0	0	0	0.0094735	1	37816	37816		107.1	39.019	1	5177500			30036	13881	21621	21787	29381	29381					0.031334072599975116
LFSLGVSITR	10	Unmodified	_LFSLGVSITR_					0	0	0		ENST00000381440.4_1_16:19128639-19128831:+|nuORF	ENST00000381440.4_1_16:19128639-19128831:+|nuORF	ENST00000381440.4_1_16:19128639-19128831:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	546.7214965820312	2	546.824224	1091.63389	-0.5652	-0.00030907	-1.9635	-0.0010737	-2.5287	-0.0013827	546.8232084787201	113.04	0.40899	113.74	113.51	113.92	0.70985					10	7	2	0	0	0	0.6502	1	42647	42647		17.113	0.96379	1	4532700			30037	11374	21622	21788	29382	29382					0.09174291402746348
LFSLLIILFL	10	Unmodified	_LFSLLIILFL_					0	0	0		ENST00000263212.9_2_22:22274709-22275219:-|nuORF	ENST00000263212.9_2_22:22274709-22275219:-|nuORF	ENST00000263212.9_2_22:22274709-22275219:-|nuORF	MSMS	A375_MHC_IP_R1	1	596.55419921875	2	596.391211	1190.76787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.19	1	100.19	99.695	100.69	0								0	0	0	0.15398	1	36824	36824		7.9102	0	1				30038	10317	21623	21789	29383	29383					0.180115571756005
LFSLVPKRKL	10	Unmodified	_LFSLVPKRKL_					0	0	0			REV__ENST00000262376.10_1_16:4930962-4931145:+|nuORF	REV__ENST00000262376.10_1_16:4930962-4931145:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	600.6781005859375	2	600.894983	1199.77541	-0.53532	-0.00032167	2.47	0.0014842	1.9347	0.0011625	601.397478359394	94.581	0.2558	94.581	94.446	94.701	0					8	4	3	0	0	0	0.93615	1	34777	34777		7.2892	2.96	1	1364200	+		30039	23205	21624	21790	29384	29384					0.18351709495891555
LFSNVQEVESN	11	Unmodified	_LFSNVQEVESN_					0	0	0			REV__nc|ENSG00000165259|Q7Z353-2|HDX	REV__nc|ENSG00000165259|Q7Z353-2|HDX	MULTI-MSMS	A375_MHC_IP_R1	1	633.7034912109375	2	633.304049	1264.59355	-0.27448	-0.00017383	-0.38427	-0.00024336	-0.65875	-0.00041719	633.303798558176	48.397	0.75968	48.397	48.122	48.882	0					23	14	2	0	0	0	0.66366	1	17062	17062		18.373	2.6345	1	5948600	+		30040	20567	21625	21791	29385	29385					-0.028167197783204756
LFSPCGVPEF	10	Unmodified	_LFSPCGVPEF_					0	0	0		ENSG00000117419|ENST00000372257|ERI3	ENSG00000117419|ENST00000372257|ERI3	ENSG00000117419|ENST00000372257|ERI3	MSMS	A375_MHC_IP_R1	1	548.1970825195312	2	548.26261	1094.51067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.5	1	109.5	109	110	0								0	0	0	0.15105	1	40161	40161		15.847	1.0089	1				30041	3483	21626	21792	29386	29386					-0.032807080400289124
LFSPDDKIGT	10	Unmodified	_LFSPDDKIGT_					0	0	0		ENSG00000249715|ENST00000624922|FER1L5;nc|ENSG00000249715|A0AVI2-4|FER1L5;nc|ENSG00000249715|A0AVI2-2|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	MSMS	A375_MHC_IP_R1	1	546.6777954101562	2	546.782222	1091.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.712	1	99.712	99.212	100.21	0								0	0	0	0.14925	1	36633	36633		19.257	1.1106	1				30042	9841	21627	21793	29387	29387					0.007777155151870829
LFSPEWAYLK	10	Unmodified	_LFSPEWAYLK_					0	0	0			REV__ENST00000502426.5_1_17:48736553-48755440:+|nuORF	REV__ENST00000502426.5_1_17:48736553-48755440:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	627.9228515625	2	627.331882	1252.64921	-0.79346	-0.00049777	-0.43268	-0.00027144	-1.2261	-0.0007692	627.8309559555262	84.878	0.3084	84.878	84.647	84.955	0					7	5	2	0	0	0	0.85226	1	31104	31104		10.074	4.3421	1	1312100	+		30043	25498	21628	21794	29388	29388					0.03299158199934027
LFSPIHGLSL	10	Unmodified	_LFSPIHGLSL_					0	0	0		L1M1_dup4527|chr9:5910919-5911522:-|25.664826814240037|0.1786031907917184|7.17|472.0|36|3|anti-sense	L1M1_dup4527|chr9:5910919-5911522:-|25.664826814240037|0.1786031907917184|7.17|472.0|36|3|anti-sense	L1M1_dup4527|chr9:5910919-5911522:-|25.664826814240037|0.1786031907917184|7.17|472.0|36|3|anti-sense	MULTI-MSMS	A375_MHC_IP_R1	1	542.7880859375	2	542.313492	1082.61243	-0.73756	-0.00039999	-0.17654	-9.5743E-05	-0.9141	-0.00049573	542.313330283544	94.471	0.56116	94.471	94.241	94.802	0					14	10	2	0	0	0	0.53946	1	34756	34756		25.399	0	1	1194000			30044	14247	21629	21795	29389	29389					0.07442906374035374
LFSRIRTLI	9	Unmodified	_LFSRIRTLI_					0	0	0			REV__ENSG00000273749|ENST00000617928|CYFIP1	REV__ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	A375_MHC_IP_R1	1	373.9732360839844	3	373.572998	1117.69716	-0.12396	-4.6309E-05	0.63472	0.00023712	0.51076	0.00019081	373.57311994174717	29.428	0.30281	29.428	29.201	29.504	0					11	5	3	0	0	0	0.27715	1	9224	9224		23.79	8.5413	1	16478000	+		30045	22953	21630	21796	29390	29390					0.14302276910666478
LFSRRWQR	8	Unmodified	_LFSRRWQR_					0	0	0			REV__nc|ENSG00000165240|Q04656-5|ATP7A	REV__nc|ENSG00000165240|Q04656-5|ATP7A	MULTI-SECPEP	A375_MHC_IP_R2	2	575.1790771484375	2	574.825424	1147.63629	-0.13545	-7.7862E-05	-0.9876	-0.0005677	-1.123	-0.00064556	574.8246656048047	42.805	0.35429	43.577	43.421	43.775	0.7724					9	6	2	0	0	0	0.972	1	15907	15907		8.5933	0	1	1741300	+		30046	20565	21631	21797	29391	29391					0.06838184651087431
LFSSTQHNL	9	Unmodified	_LFSSTQHNL_					0	0	0		ENST00000488206.5_1_1:62175075-62189407:-|nuORF	ENST00000488206.5_1_1:62175075-62189407:-|nuORF	ENST00000488206.5_1_1:62175075-62189407:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	524.1666259765625	2	523.766906	1045.51926	-0.30147	-0.0001579	-0.20975	-0.00010986	-0.51122	-0.00026776	523.766521755397	95.248	0.86414	95.998	95.483	96.347	0.75045					26	16	3	0	0	0	0.53748	1	36158	36158		30.637	2.1497	1	2749600			30047	12612	21632	21798	29392	29392					-0.0016801807919364364
LFSVQREGL	9	Unmodified	_LFSVQREGL_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2;ENST00000470115.1_1_2:27559063-27560169:-|nuORF;nc|ENSG00000115207|Q8WUA4-2|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	A375_MHC_IP_R2	2	525.8746948242188	2	524.792924	1047.57129	-0.56188	-0.00029487	-0.78909	-0.00041411	-1.351	-0.00070898	524.7926162956157	74.937	0.75951	75.674	75.163	75.922	0.73752					27	14	3	0	0	0	0.62719	1	28296	28296		13.508	0	1	3094300			30048	3280	21633	21799	29393	29393					0.049411453345555856
LFSVSSVLRL	10	Unmodified	_LFSVSSVLRL_					0	0	0			REV__ENST00000581230.5_1_17:62498125-62502378:-|nuORF	REV__ENST00000581230.5_1_17:62498125-62502378:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	374.6291198730469	3	374.229008	1119.66519	0.44646	0.00016708	-0.19783	-7.4032E-05	0.24864	9.3046E-05	374.22888233212166	91.412	0.61098	92.147	91.919	92.53	0.7345					31	11	4	0	0	0	0.71946	1	34752	34752		3.5871	0.26742	1	9328500	+		30049	26348	21634	21800	29394	29394					0.11014864436833705
LFSWPQYWKEV	11	Unmodified	_LFSWPQYWKEV_					0	0	0			REV__nc|ENSG00000100359|Q96HU1-2|SGSM3	REV__nc|ENSG00000100359|Q96HU1-2|SGSM3	MULTI-SECPEP	A375_MHC_IP_R1	1	742.2738647460938	2	741.874445	1481.73434	-0.84217	-0.00062478	-0.050879	-3.7746E-05	-0.89305	-0.00066253	741.8743293057989	137.36	0.41277	137.36	137.13	137.54	0					16	7	4	0	0	0	0.9889	1	52896	52896		12.241	0	1	6348700	+		30050	17083	21635	21801	29395	29395					0.012739036657194447
LFSYCMEDI	9	Unmodified	_LFSYCMEDI_					0	0	0		nc|ENSG00000139508|Q7Z3Q1-2|SLC46A3;ENSG00000139508|ENST00000266943|SLC46A3;nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3	nc|ENSG00000139508|Q7Z3Q1-2|SLC46A3	nc|ENSG00000139508|Q7Z3Q1-2|SLC46A3	MSMS	A375_MHC_IP_R2	2	560.7059936523438	2	560.738111	1119.46167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.279	1	83.022	82.522	83.522	0.74293								0	0	0	0.15486	1	31254	31254		8.5933	0.68312	1				30051	5081	21636	21802	29396	29396					-0.09328364391308241
LFSYDLAGLL	10	Unmodified	_LFSYDLAGLL_					0	0	0			REV__ENSG00000160190|ENST00000352133|SLC37A1	REV__ENSG00000160190|ENST00000352133|SLC37A1	MULTI-SECPEP	A375_MHC_IP_R2	2	556.6558227539062	2	556.305332	1110.59611	-0.81189	-0.00045166	0.63302	0.00035215	-0.17887	-9.9506E-05	556.3056885726838	106.36	0.50875	107.12	106.94	107.44	0.75977					18	9	3	0	0	0	0.83086	1	40290	40290		21.747	3.6117	1	1245500	+		30052	20148	21637	21803	29397	29397					0.0452378041729844
LFTFFVVK	8	Unmodified	_LFTFFVVK_					0	0	0			REV__ENSG00000277481|ENST00000620267|PKD1L3	REV__ENSG00000277481|ENST00000620267|PKD1L3	MSMS	A375_MHC_IP_R1	1	500.7153015136719	2	500.796946	999.57934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.74	1	132.74	132.24	133.24	0								0	0	0	0.16876	1	51182	51182		9.3474	1.4373	1		+		30053	22972	21638	21804	29398	29398					0.07953324321999844
LFTNLYHLK	9	Unmodified	_LFTNLYHLK_					0	0	0			REV__ENST00000335420.9_1_7:129774287-129774428:+|nuORF	REV__ENST00000335420.9_1_7:129774287-129774428:+|nuORF	MSMS	A375_MHC_IP_R2	2	383.5893859863281	3	383.553603	1147.63898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.825	1	36.589	36.089	37.089	0.76338								0	0	0	0.15486	1	13014	13014		8.4443	0.96724	1		+		30054	23671	21639	21805	29399	29399					0.07106595265349824
LFTNRQKEI	9	Unmodified	_LFTNRQKEI_					0	0	0			REV__AKAP9|p.S851L|1|0.39|ENSG00000127914|chr7:92002469-92002469|C/T|missense_variant	REV__AKAP9|p.S851L|1|0.39|ENSG00000127914|chr7:92002469-92002469|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	383.9189453125	3	383.552262	1147.63496	0.077611	2.9768E-05	-0.41038	-0.0001574	-0.33277	-0.00012763	383.8864491352133	36.559	1.1139	36.559	35.982	37.096	0					59	20	4	0	0	0	0.7235	1	12364	12364		4.897	0.36815	1	6722800	+		30055	15352	21640	21806	29400	29400					0.0670450577167685
LFTRRLKVLRI	11	Unmodified	_LFTRRLKVLRI_					0	0	0		ENST00000358130.6_1_X:80457236-80457332:-|nuORF;ENST00000436386.5_3_X:80453275-80457332:-|nuORF;ENST00000451455.1_3_X:80450782-80457332:-|nuORF	ENST00000358130.6_1_X:80457236-80457332:-|nuORF	ENST00000358130.6_1_X:80457236-80457332:-|nuORF	MSMS	A375_MHC_IP_R1	1	707.839111328125	2	707.972088	1413.92962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.06	1	105.06	104.56	105.56	0								0	0	0	0.16353	1	38573	38573		0.35063	0	1				30056	10993	21641	21807	29401	29401					0.23921538981267076
LFTTKSPVP	9	Unmodified	_LFTTKSPVP_					0	0	0		ENST00000455774.1_1_10:29699301-29757982:+|nuORF	ENST00000455774.1_1_10:29699301-29757982:+|nuORF	ENST00000455774.1_1_10:29699301-29757982:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	991.4674682617188	1	989.566609	988.559333	-0.061731	-6.1086E-05	-0.1902	-0.00018822	-0.25193	-0.0002493	989.5662798200284	133.28	0.25618	133.28	133.15	133.41	0					8	4	3	0	0	0	0.4867	1	51392	51392		20.454	0	1	14133000			30057	12119	21642	21808	29402	29402					0.0645952859136969
LFTTKSPVP	9	Unmodified	_LFTTKSPVP_					0	0	0		ENST00000455774.1_1_10:29699301-29757982:+|nuORF	ENST00000455774.1_1_10:29699301-29757982:+|nuORF	ENST00000455774.1_1_10:29699301-29757982:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	989.566609	988.559333	0.068343	6.763E-05	-0.23208	-0.00022965	-0.16373	-0.00016202	989.5661864331255	133.11	0.2542	133.27	133.09	133.35	0.16487	-0.0055169	-1.4726E-05	NaN	20.454	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10905000			30058	12119	21642	21808							0.0645952859136969
LFVFDCIYF	9	Unmodified	_LFVFDCIYF_					0	0	0		nc|ENSG00000005156|P49916-4|LIG3;nc|ENSG00000005156|P49916-3|LIG3;nc|ENSG00000005156|P49916-2|LIG3;ENSG00000005156|ENST00000378526|LIG3	nc|ENSG00000005156|P49916-4|LIG3	nc|ENSG00000005156|P49916-4|LIG3	MULTI-MSMS	A375_MHC_IP_R2	2	584.1831665039062	2	583.783179	1165.5518	-0.38184	-0.00022291	0.71776	0.00041901	0.33592	0.0001961	583.7837388235083	70.314	0.81393	71.048	70.488	71.302	0.73421					31	15	3	0	0	0	0.5339	1	26608	26608		18.135	1.1927	1	5278500			30059	885	21643	21809	29403	29403					-0.024349470005518015
LFVFKLIPM	9	Unmodified	_LFVFKLIPM_					0	0	0		ENST00000477136.5_1_2:27275826-27278122:+|nuORF;ENST00000489683.5_1_2:27275826-27279072:+|nuORF;nc|ENSG00000084693|Q8NDL9-3|AGBL5;nc|ENSG00000084693|Q8NDL9-2|AGBL5;ENSG00000084693|ENST00000360131|AGBL5	ENST00000477136.5_1_2:27275826-27278122:+|nuORF	ENST00000477136.5_1_2:27275826-27278122:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	369.57476806640625	3	369.89268	1106.65621	0.20339	7.5231E-05	0.72595	0.00026852	0.92933	0.00034375	369.89316997667464	19.598	0.50868	19.598	19.318	19.827	0					12	8	2	0	0	0	0.71977	1	4764	4764		2.9952	0	1	1510600			30060	1801	21644	21810	29404	29404					0.10714799546826725
LFVRAFPCW	9	Unmodified	_LFVRAFPCW_					0	0	0			REV__tr|U7SS02|U7SS02_FUSNUThioredoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01493PE=4SV=1	REV__tr|U7SS02|U7SS02_FUSNUThioredoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01493PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	570.580078125	2	569.796955	1137.57936	-0.21885	-0.0001247	1.8424	0.0010498	1.6236	0.00092511	569.7981977785377	90.516	0.66139	91.25	90.904	91.566	0.73451					16	12	2	0	0	0	0.74651	1	34330	34330		13.508	12.315	1	1529400	+		30061	28412	21645	21811	29405	29405					0.0160700105034266
LFVRAFPCW	9	Unmodified	_LFVRAFPCW_					0	0	0			REV__tr|U7SS02|U7SS02_FUSNUThioredoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01493PE=4SV=1	REV__tr|U7SS02|U7SS02_FUSNUThioredoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01493PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	569.796955	1137.57936	-0.46957	-0.00026756	2.1933	0.0012497	1.7237	0.00098218	569.7979993691495	91.229	0.70865	91.229	90.845	91.554	0	-0.010506	0.00027655	NaN	13.508	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1565200	+		30062	28412	21645	21811							0.0160700105034266
LFVRKNAIV	9	Unmodified	_LFVRKNAIV_					0	0	0		nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	MULTI-SECPEP	A375_MHC_IP_R2	2	354.2937316894531	3	353.89396	1058.66005	-0.52423	-0.00018552	0.03924	1.3887E-05	-0.48499	-0.00017164	353.89390083579934	57.703	0.45826	58.452	58.221	58.679	0.74894					10	8	2	0	0	0	0.76452	1	21843	21843		4.897	0	1	2048600			30063	1779	21646	21812	29406	29406					0.13306605364869029
LFVRNLATT	9	Unmodified	_LFVRNLATT_					0	0	0		HNRNPR|p.Y490Lfs*4|1|0.21|ENSG00000125944|chr1:23310888-23310889|AG/-|frameshift_variant;nc|ENSG00000125944|O43390-3|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-4|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR	HNRNPR|p.Y490Lfs*4|1|0.21|ENSG00000125944|chr1:23310888-23310889|AG/-|frameshift_variant	HNRNPR|p.Y490Lfs*4|1|0.21|ENSG00000125944|chr1:23310888-23310889|AG/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	517.7277221679688	2	517.803291	1033.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.484	1	69.484	68.984	69.984	0								0	0	0	0.15486	1	25215	25215		8.5933	0	1				30064	4009	21647	21813	29407	29407					0.07657735714224145
LFVVQKVTK	9	Unmodified	_LFVVQKVTK_					0	0	0		AIM2|p.E275K|1|0.43|ENSG00000163568|chr1:159063668-159063668|C/T|missense_variant	AIM2|p.E275K|1|0.43|ENSG00000163568|chr1:159063668-159063668|C/T|missense_variant	AIM2|p.E275K|1|0.43|ENSG00000163568|chr1:159063668-159063668|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	355.28521728515625	3	354.562099	1060.66447	-0.076411	-2.7092E-05	-0.23137	-8.2036E-05	-0.30778	-0.00010913	354.56200239038765	46.523	0.86468	47.288	47.058	47.923	0.76519					33	16	3	0	0	0	0.70307	1	17365	17365		4.1895	0.86986	1	29149000			30065	90	21648	21814	29408	29408					0.13656069787793967
LFWDAENEV	9	Unmodified	_LFWDAENEV_					0	0	0			REV__ENSG00000214102|ENST00000397541|WEE2	REV__ENSG00000214102|ENST00000397541|WEE2	MSMS	A375_MHC_IP_R1	1	561.7084350585938	2	561.758746	1121.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.429	1	93.429	92.929	93.929	0								0	0	0	0.15283	1	34343	34343		16.942	5.302	1		+		30066	22645	21649	21815	29409	29409					-0.052951440359720436
LFWELFYQ	8	Unmodified	_LFWELFYQ_					0	0	0			REV__DNAH1|p.S3473F|2|0.36|ENSG00000114841|chr3:52392969-52392969|C/T|missense_variant	REV__DNAH1|p.S3473F|2|0.36|ENSG00000114841|chr3:52392969-52392969|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	573.1851196289062	2	573.286943	1144.55933	-0.32961	-0.00018896	-0.7863	-0.00045077	-1.1159	-0.00063974	573.2863861932343	28.306	0.85708	28.306	27.735	28.592	0					55	16	5	0	0	0	0.74945	1	8540	8540		20.454	20.454	1	52956000	+		30067	16002	21650	21816	29410	29410					-0.007164714086229651
LFWGKHTGLV	10	Unmodified	_LFWGKHTGLV_					0	0	0			REV__nc|ENSG00000100416|O75648-3|TRMU	REV__nc|ENSG00000100416|O75648-3|TRMU	MULTI-SECPEP	A375_MHC_IP_R2	2	579.7491455078125	2	579.326934	1156.63931	-0.061891	-3.5855E-05	0.38086	0.00022064	0.31897	0.00018479	579.3269753702536	142.27	0.25342	142.3	142.08	142.33	0.030731					5	4	2	0	0	0	0.94421	1	55608	55608		1.6526	0	1	1343500	+		30068	17089	21651	21817	29411	29411					0.06726014985224538
LFWGLWLV	8	Unmodified	_LFWGLWLV_					0	0	0			REV__ENSG00000064687|ENST00000263094|ABCA7	REV__ENSG00000064687|ENST00000263094|ABCA7	MULTI-SECPEP	A375_MHC_IP_R1	1	517.1957397460938	2	517.297114	1032.57967	-0.46947	-0.00024286	-1.3295	-0.00068775	-1.799	-0.00093061	517.2968626142214	93.459	1.6266	93.459	92.973	94.599	0					47	31	3	0	0	0	0.90851	1	34350	34350		17.087	0	1	1635600	+		30069	16482	21652	21818	29412	29412					0.06468744041831087
LFWKRHFCRYK	11	Unmodified	_LFWKRHFCRYK_					0	0	0		ENST00000489708.1_1_7:33545204-33545258:+|nuORF	ENST00000489708.1_1_7:33545204-33545258:+|nuORF	ENST00000489708.1_1_7:33545204-33545258:+|nuORF	MSMS	A375_MHC_IP_R1	1	528.6481323242188	3	528.618724	1582.83434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.57	1	127.57	127.07	128.07	0								0	0	0	0.16358	1	48919	48919		0.094841	0	1				30070	12641	21653	21819	29413	29413					0.06623862518563328
LFWKRHFCRYK	11	Unmodified	_LFWKRHFCRYK_					0	0	0		ENST00000489708.1_1_7:33545204-33545258:+|nuORF	ENST00000489708.1_1_7:33545204-33545258:+|nuORF	ENST00000489708.1_1_7:33545204-33545258:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	791.64208984375	2	792.424448	1582.83434	-0.95759	-0.00075882	1.9103	0.0015138	0.95273	0.00075497	792.4262766212318	123.4	0.45333	123.77	123.53	123.98	0.3766					10	8	2	0	0	0	0.99738	1	47341	47341		2.7352	0	1	19677000			30071	12641	21653	21819	29414	29414					0.06623862518563328
LFWKTFLLY	9	Unmodified	_LFWKTFLLY_					0	0	0		nc|ENSG00000086991|Q9NPH5-5|NOX4;nc|ENSG00000086991|Q9NPH5-9|NOX4;chr11:89490553-89492121|256|10.86|0.47|4.52|-|ENST00000532825|NOX4,NOX4;nc|ENSG00000086991|Q9NPH5-6|NOX4;nc|ENSG00000086991|Q9NPH5-8|NOX4;chr11:89492219-89497997|199|14.56|0.13|6.76|-|ENST00000527956|NOX4,NOX4;ENSG00000086991|ENST00000263317|NOX4;nc|ENSG00000086991|Q9NPH5-7|NOX4;ENST00000527626.5_1_11:89166015-89224483:-|nuORF;ENST00000525278.1_1_11:89177257-89224483:-|nuORF;nc|ENSG00000086991|Q9NPH5-3|NOX4;nc|ENSG00000086991|Q9NPH5-4|NOX4	nc|ENSG00000086991|Q9NPH5-5|NOX4	nc|ENSG00000086991|Q9NPH5-5|NOX4	MULTI-SECPEP	A375_MHC_IP_R1	1	410.2889099121094	3	410.902232	1229.68487	-0.097101	-3.9899E-05	1.9765	0.00081213	1.8794	0.00077223	410.9033125766432	19.426	0.35488	19.426	19.268	19.623	0					9	6	2	0	0	0	0.75164	1	4752	4752		13.615	5.6695	1	1769900			30072	405	21654	21820	29415	29415					0.0792124044760385
LFWLHRLF	8	Unmodified	_LFWLHRLF_					0	0	0			REV__ENSG00000009335|ENST00000348165|UBE3C	REV__ENSG00000009335|ENST00000348165|UBE3C	MULTI-SECPEP	A375_MHC_IP_R2	2	378.6389465332031	3	377.886917	1130.63892	-0.0035368	-1.3365E-06	0.78223	0.0002956	0.7787	0.00029426	377.88819835617596	66.296	0.15508	67.032	66.932	67.087	0.73631					4	2	2	0	0	0	0.972	1	25134	25134		7.2892	2.7604	1	385580	+		30073	16183	21655	21821	29416	29416					0.07882640056027412
LFWLILISMMH	11	Unmodified	_LFWLILISMMH_					0	0	0		ENSG00000154265|ENST00000392676|ABCA5;nc|ENSG00000154265|Q8WWZ7-2|ABCA5	ENSG00000154265|ENST00000392676|ABCA5	ENSG00000154265|ENST00000392676|ABCA5	MSMS	A375_MHC_IP_R2	2	702.3798217773438	2	702.382537	1402.75052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.79	1	113.52	113.02	114.02	0.72458								0	0	0	0.16179	1	42518	42518		9.3831	2.2814	1				30074	6078	21656	21822	29417	29417					0.06525570306621375
LFWVMLEVL	9	Unmodified	_LFWVMLEVL_					0	0	0		ENST00000037243.6_1_16:75611580-75611622:+|nuORF	ENST00000037243.6_1_16:75611580-75611622:+|nuORF	ENST00000037243.6_1_16:75611580-75611622:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	384.2608642578125	3	383.884073	1148.63039	0.057818	2.2195E-05	-0.11073	-4.2506E-05	-0.052909	-2.0311E-05	383.884007683136	24.021	1.0674	24.021	23.33	24.397	0					25	20	2	0	0	0	0.64971	1	6822	6822		11.495	0.59575	1	18975000			30075	10062	21657	21823	29418	29418					0.06201905304533284
LFYARTELIW	10	Unmodified	_LFYARTELIW_					0	0	0			REV__ENSG00000163554|ENST00000643759|SPTA1	REV__ENSG00000163554|ENST00000643759|SPTA1	MSMS	A375_MHC_IP_R2	2	656.66943359375	2	656.358431	1310.70231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.08	1	113.79	113.29	114.29	0.70985								0	0	0	0.15308	1	42634	42634		10.824	0	1		+		30076	20378	21658	21824	29419	29419					0.059385359826137574
LFYFLFVHYKF	11	Unmodified	_LFYFLFVHYKF_					0	0	0		ENSG00000021488|ENST00000023064|SLC7A9	ENSG00000021488|ENST00000023064|SLC7A9	ENSG00000021488|ENST00000023064|SLC7A9	MULTI-SECPEP	A375_MHC_IP_R1	1	509.0075988769531	3	508.607708	1522.80129	-0.6789	-0.0003453	0.58599	0.00029804	-0.092916	-4.7258E-05	508.6079241545995	134.01	0.9617	134.01	133.66	134.62	0					31	18	2	0	0	0	1.001	1	51658	51658		0.50596	0.051438	1	5177600			30077	1063	21659	21825	29420	29420					0.06080558947519421
LFYFVFHFSLY	11	Unmodified	_LFYFVFHFSLY_					0	0	0			REV__ENST00000475582.5_1_2:27590224-27590551:-|nuORF	REV__ENST00000475582.5_1_2:27590224-27590551:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	742.7766723632812	2	741.876456	1481.73836	-0.99384	-0.0007373	-0.37804	-0.00028046	-1.3719	-0.0010178	742.3779033555165	35.966	0.4074	36.73	36.486	36.894	0.76338					15	7	3	0	0	0	0.7359	1	13082	13082		3.2813	0.78282	1	3083800	+		30078	25168	21660	21826	29421	29421					0.016759931594833688
LFYKFRPLVWA	11	Unmodified	_LFYKFRPLVWA_					0	0	0			REV__ENST00000318782.8_1_16:3022587-3022926:+|nuORF	REV__ENST00000318782.8_1_16:3022587-3022926:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	481.0115661621094	3	480.611452	1438.81253	-0.66958	-0.00032181	0.23109	0.00011106	-0.43849	-0.00021074	480.6115767834696	133.98	0.70978	133.98	133.76	134.47	0					17	13	2	0	0	0	0.73795	1	51727	51727		1.3296	0.92138	1	3539500	+		30079	23554	21661	21827	29422	29422					0.1106738104165288
LFYRKRKKKL	10	Unmodified	_LFYRKRKKKL_					0	0	0			REV__ENST00000495198.6_1_5:64023893-64064425:-|nuORF	REV__ENST00000495198.6_1_5:64023893-64064425:-|nuORF	MSMS	A375_MHC_IP_R2	2	690.6724853515625	2	690.453531	1378.89251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.54	1	82.283	81.783	82.783	0.74293								0	0	0	0.15585	1	30966	30966		1.8442	0.36234	1		+		30080	25445	21662	21828	29423	29423					0.21821867435505737
LGAAHEMSGV	10	Unmodified	_LGAAHEMSGV_					0	0	0			REV__ENST00000377658.8_1_1:6651717-6651999:-|nuORF	REV__ENST00000377658.8_1_1:6651717-6651999:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	486.2001647949219	2	486.234384	970.454216	-0.51715	-0.00025146	1.324	0.00064375	0.8068	0.00039229	486.2349553763283	87.661	0.25246	88.392	88.266	88.519	0.7318					6	4	2	0	0	0	0.80715	1	33376	33376		16.942	0	1	636670	+		30081	24163	21663	21829	29424	29424					-0.03219335876678997
LGAEADPDGD	10	Unmodified	_LGAEADPDGD_					0	0	0			REV__ENSG00000188976|ENST00000327044|NOC2L	REV__ENSG00000188976|ENST00000327044|NOC2L	MSMS	A375_MHC_IP_R2	2	480.135986328125	2	480.201261	958.38797	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.974	1	65.713	65.213	66.213	0.73811								0	0	0	0.14862	1	24635	24635		20.454	5.8719	1		+		30082	22128	21664	21830	29425	29425					-0.09288873237755979
LGAGFHPV	8	Unmodified	_LGAGFHPV_					0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	398.61181640625	2	399.218863	796.423173	-0.24404	-9.7424E-05	0.27283	0.00010892	0.028797	1.1496E-05	399.21883872957943	60.863	0.55973	60.863	60.566	61.126	0					19	10	2	0	0	0	0.972	1	21957	21957		6.3541	0	1	2381500	+		30083	21568	21665	21831	29426	29426					0.0168187887137492
LGAGLVVCSTI	11	Unmodified	_LGAGLVVCSTI_					0	0	0			REV__ENST00000337147.11_1_6:159187651-159187804:-|nuORF	REV__ENST00000337147.11_1_6:159187651-159187804:-|nuORF	MSMS	A375_MHC_IP_R2	2	516.63720703125	2	516.791535	1031.56852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.167	1	64.907	64.407	65.407	0.74022								0	0	0	0.15541	1	24331	24331		17.113	2.5312	1		+		30084	23689	21666	21832	29427	29427					0.05399553885399655
LGAHSAVITV	10	Unmodified	_LGAHSAVITV_					0	0	0		ENST00000227451.3_1_11:58972969-58973137:+|nuORF	ENST00000227451.3_1_11:58972969-58973137:+|nuORF	ENST00000227451.3_1_11:58972969-58973137:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6528015136719	2	484.282192	966.549831	-1.1869	-0.00057478	1.0288	0.00049825	-0.15802	-7.6527E-05	484.2825817411612	53.31	0.5111	54.061	53.79	54.301	0.75105					12	9	2	0	0	0	0.61429	1	20138	20138		37.974	7.3375	1	2534000			30085	10125	21667	21833	29428	29428					0.06521760305849966
LGAKCVHL	8	Unmodified	_LGAKCVHL_					0	0	0			REV__ENST00000573090.1_1_17:79213604-79214950:+|nuORF	REV__ENST00000573090.1_1_17:79213604-79214950:+|nuORF	MSMS	A375_MHC_IP_R2	2	420.6402893066406	2	420.741648	839.468743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.514	1	31.233	30.733	31.733	0.71857								0	0	0	0.16876	1	10730	10730		10.183	0	1		+		30086	26291	21668	21834	29429	29429					0.042587810620943856
LGALFQPDSF	10	Unmodified	_LGALFQPDSF_					0	0	0		ENSG00000101162|ENST00000217133|TUBB1	ENSG00000101162|ENST00000217133|TUBB1	ENSG00000101162|ENST00000217133|TUBB1	MSMS	A375_MHC_IP_R1	1	547.6928100585938	2	547.779482	1093.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.603	1	48.603	48.103	49.103	0								0	0	0	0.15047	1	17157	17157		16.942	2.104	1			+	30087	2260	21669	21835	29430	29430					0.0013803672338781325
LGALQHGFFR	10	Unmodified	_LGALQHGFFR_					0	0	0		nc|ENSG00000105204|Q9Y463-2|DYRK1B;nc|ENSG00000105204|Q9Y463-3|DYRK1B;ENSG00000105204|ENST00000323039|DYRK1B	nc|ENSG00000105204|Q9Y463-2|DYRK1B	nc|ENSG00000105204|Q9Y463-2|DYRK1B	MULTI-SECPEP	A375_MHC_IP_R1	1	382.9454040527344	3	382.545331	1144.61416	0.47056	0.00018001	2.952	0.0011293	3.4226	0.0013093	382.54530366160725	51.572	1.0661	51.572	51.27	52.336	0					56	20	5	0	0	0	0.86849	1	18286	18286		16.566	0	1	15235000			30088	2575	21670	21836	29431	29431					0.047639601826631406
LGALQHGFFR	10	Unmodified	_LGALQHGFFR_					0	0	0		nc|ENSG00000105204|Q9Y463-2|DYRK1B;nc|ENSG00000105204|Q9Y463-3|DYRK1B;ENSG00000105204|ENST00000323039|DYRK1B	nc|ENSG00000105204|Q9Y463-2|DYRK1B	nc|ENSG00000105204|Q9Y463-2|DYRK1B	MULTI-SECPEP	A375_MHC_IP_R2	2	382.9455261230469	3	382.545331	1144.61416	-0.21464	-8.2109E-05	3.4848	0.0013331	3.2702	0.001251	382.5454707981349	50.683	0.65647	51.437	51.108	51.765	0.75406					49	12	5	0	0	0	0.85215	1	19063	19063		17.443	8.0595	1	13487000			30089	2575	21670	21836	29432	29432					0.047639601826631406
LGALSFAPY	9	Unmodified	_LGALSFAPY_					0	0	0		ENST00000329627.11_2_22:18568015-18571019:+|nuORF	ENST00000329627.11_2_22:18568015-18571019:+|nuORF	ENST00000329627.11_2_22:18568015-18571019:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	469.1844787597656	2	469.752736	937.490919	-0.69147	-0.00032482	-3.0475	-0.0014316	-3.739	-0.0017564	469.7512701838803	39.419	0.25401	40.194	39.965	40.219	0.77451					7	4	2	0	0	0	0.71541	1	14465	14465		7.2892	0	1	1182800			30090	10757	21671	21837	29433	29433					0.019672840115163126
LGALSLEAYL	10	Unmodified	_LGALSLEAYL_					0	0	0		nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB;ENST00000546328.1_1_12:109577795-109604957:+|nuORF	nc|ENSG00000076555|O00763-2|ACACB	nc|ENSG00000076555|O00763-2|ACACB	MULTI-SECPEP	A375_MHC_IP_R2	2	525.6837768554688	2	525.297507	1048.58046	-0.48509	-0.00025482	-0.71163	-0.00037382	-1.1967	-0.00062864	525.2968869338688	67.369	0.45911	68.105	67.951	68.41	0.73631					11	8	2	0	0	0	0.57563	1	25536	25536		25.399	4.9457	1	709860			30091	1636	21672	21838	29434	29434					0.05811493900228015
LGALSRNPIL	10	Unmodified	_LGALSRNPIL_					0	0	0			REV__ENST00000575919.1_1_17:4936254-4936696:-|nuORF	REV__ENST00000575919.1_1_17:4936254-4936696:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	351.9318542480469	3	351.885353	1052.63423	-0.25233	-8.8791E-05	0.078836	2.7741E-05	-0.17349	-6.1049E-05	351.885375519926	41.906	0.3582	41.906	41.674	42.032	0					11	6	2	0	0	0	0.71364	1	14425	14425		6.1918	0.40842	1	1469400	+		30092	26309	21673	21839	29435	29435					0.11001711122617053
LGALSRNPIL	10	Unmodified	_LGALSRNPIL_					0	0	0			REV__ENST00000575919.1_1_17:4936254-4936696:-|nuORF	REV__ENST00000575919.1_1_17:4936254-4936696:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	351.93182373046875	3	351.885353	1052.63423	-0.46864	-0.00016491	-0.43574	-0.00015333	-0.90438	-0.00031824	351.8852455145039	40.976	0.45708	41.75	41.438	41.895	0.77451					12	8	2	0	0	0	0.71455	1	15081	15081		5.7834	1.2546	1	939300	+		30093	26309	21673	21839	29436	29436					0.11001711122617053
LGALSSVVAL	10	Unmodified	_LGALSSVVAL_					0	0	0		ENSG00000188064|ENST00000339464|WNT7B	ENSG00000188064|ENST00000339464|WNT7B	ENSG00000188064|ENST00000339464|WNT7B	MULTI-SECPEP	A375_MHC_IP_R1	1	465.6866455078125	2	465.286943	928.559333	-0.27188	-0.0001265	-0.86191	-0.00040104	-1.1338	-0.00052754	465.2868713631767	61.171	0.45916	61.171	60.973	61.432	0					15	8	2	0	0	0	0.2728	1	22072	22072		57.471	13.613	1	1672800			30094	8880	21674	21840	29437	29437					0.09219528591370363
LGALVDCLVF	10	Unmodified	_LGALVDCLVF_					0	0	0		ENSG00000154359|ENST00000398246|LONRF1;nc|ENSG00000154359|Q17RB8-2|LONRF1;LONRF1|p.L299Ffs*8|1|0.2|ENSG00000154359|chr8:12740940-12740940|T/-|frameshift_variant	ENSG00000154359|ENST00000398246|LONRF1	ENSG00000154359|ENST00000398246|LONRF1	MULTI-MSMS	A375_MHC_IP_R2	2	524.6875	2	525.288628	1048.5627	-0.484	-0.00025424	-1.1129	-0.00058457	-1.5969	-0.00083881	525.2881825147323	76.643	0.91112	77.384	77.045	77.956	0.74052					30	15	3	0	0	0	0.60556	1	29048	29048		20.454	1.1966	1	6029000			30095	6083	21675	21841	29438	29438					0.04036455373739045
LGALWFCCNY	10	Unmodified	_LGALWFCCNY_					0	0	0			REV__ENST00000532045.5_1_11:834538-836571:+|nuORF	REV__ENST00000532045.5_1_11:834538-836571:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	397.5763244628906	3	397.17715	1188.50962	-0.18208	-7.2318E-05	-1.0462	-0.00041555	-1.2283	-0.00048786	397.176703177925	106.97	0.50652	107.72	107.5	108	0.75963					17	9	3	0	0	0	0.71118	1	40451	40451		3.8763	1.1411	1	1825700	+		30096	21469	21676	21842	29439	29439					-0.07709245680575805
LGALWFCCNY	10	Unmodified	_LGALWFCCNY_					0	0	0			REV__ENST00000532045.5_1_11:834538-836571:+|nuORF	REV__ENST00000532045.5_1_11:834538-836571:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	397.17715	1188.50962	0.12245	4.8633E-05	-0.87179	-0.00034626	-0.74934	-0.00029762	397.5110744969536	107.64	0.40828	107.64	107.44	107.85	0	-0.044121	3.8148E-05	NaN	3.8763	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1646500	+		30097	21469	21676	21842							-0.07709245680575805
LGALWFCCNY	10	Unmodified	_LGALWFCCNY_					0	0	0			REV__ENST00000532045.5_1_11:834538-836571:+|nuORF	REV__ENST00000532045.5_1_11:834538-836571:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	397.17715	1188.50962	-0.18208	-7.2318E-05	-1.0462	-0.00041555	-1.2283	-0.00048786	397.176703177925	106.97	0.50652	107.72	107.5	108	0.75963	0.044121	-0.00016972	NaN	3.8763	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1825700	+		30098	21469	21676	21842							-0.07709245680575805
LGANQSFTK	9	Unmodified	_LGANQSFTK_					0	0	0			REV__ZNF583|p.R470K|1|0.12|ENSG00000198440|chr19:56424067-56424067|G/A|missense_variant	REV__ZNF583|p.R470K|1|0.12|ENSG00000198440|chr19:56424067-56424067|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	483.6559753417969	2	483.256174	964.497795	-0.52877	-0.00025553	-0.18814	-9.0922E-05	-0.71692	-0.00034645	483.25614114309843	30.934	0.45693	30.934	30.703	31.16	0					14	8	2	0	0	0	0.28475	1	9908	9908		48.346	4.4876	1	2739800	+		30099	22372	21677	21843	29440	29440					0.014125968920893683
LGAPAKPPL	9	Unmodified	_LGAPAKPPL_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;ENST00000557781.5_1_12:57498159-57499088:-|nuORF	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	MULTI-MSMS	A375_MHC_IP_R1	1	432.67108154296875	2	432.271096	862.527639	0.19957	8.6267E-05	-0.19544	-8.4483E-05	0.0041262	1.7836E-06	432.270919740226	44.497	0.56076	44.497	44.216	44.777	0					21	10	3	0	0	0	0.11296	1	15538	15538		48.346	22.005	1	4152800			30100	7128	21678	21844	29441	29441					0.09087580628079195
LGAPAKPPL	9	Unmodified	_LGAPAKPPL_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;ENST00000557781.5_1_12:57498159-57499088:-|nuORF	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	MULTI-MSMS	A375_MHC_IP_R2	2	432.6708679199219	2	432.271096	862.527639	-0.055381	-2.3939E-05	-0.32299	-0.00013962	-0.37837	-0.00016356	432.2708830576667	43.64	0.65627	44.409	44.076	44.732	0.7691					25	12	3	0	0	0	0.11296	2	16272	16272;16314		48.346	22.005	1	3124100			30101	7128	21678	21844	29442;29443	29442					0.09087580628079195
LGAPGPGPRSG	11	Unmodified	_LGAPGPGPRSG_					0	0	0		ENST00000536597.2_1_19:53313225-53313717:+|nuORF	ENST00000536597.2_1_19:53313225-53313717:+|nuORF	ENST00000536597.2_1_19:53313225-53313717:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	483.1605224609375	2	483.261791	964.509028	-0.1041	-5.0306E-05	0.6363	0.0003075	0.5322	0.00025719	483.26213769324903	109.39	1.8785	109.39	108.51	110.39	0					80	36	3	0	0	0	0.72798	1	40445	40445		10.824	0.64053	1	5388000			30102	13238	21679	21845	29444	29444					0.025354189862468957
LGAPGPVD	8	Unmodified	_LGAPGPVD_					0	0	0			REV__nc|ENSG00000182871|P39060|COL18A1	REV__nc|ENSG00000182871|P39060|COL18A1	MULTI-SECPEP	A375_MHC_IP_R2	2	725.7822875976562	1	725.382831	724.375555	-0.72899	-0.0005288	-0.14352	-0.0001041	-0.87251	-0.0006329	725.382746755332	104.73	1.0171	105.49	105.16	106.17	0.76308					47	19	3	0	0	0	0.87193	1	39812	39812		22.453	1.5814	1	13042000	+		30103	27398	21680	21846	29445	29445					0.0023417988052187866
LGAPGPVD	8	Unmodified	_LGAPGPVD_					0	0	0			REV__nc|ENSG00000182871|P39060|COL18A1	REV__nc|ENSG00000182871|P39060|COL18A1	MULTI-MATCH	A375_MHC_IP_R1	1		1	725.382831	724.375555	-0.44422	-0.00032223	0.16084	0.00011667	-0.28338	-0.00020556	725.3828423495147	105.55	0.96497	105.55	105.2	106.16	0	0.029804	0.00010131	NaN	52.693	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10101000	+		30104	27398	21680	21846							0.0023417988052187866
LGAPRLLWR	9	Unmodified	_LGAPRLLWR_					0	0	0			REV__ENST00000280758.9_2_12:107712233-107712596:+|nuORF	REV__ENST00000280758.9_2_12:107712233-107712596:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	540.65380859375	2	541.335093	1080.65563	-0.76254	-0.00041279	-1.1753	-0.00063621	-1.9378	-0.001049	541.3344363169856	67.851	0.4073	68.586	68.409	68.816	0.73511					11	7	2	0	0	0	0.69504	1	25745	25745		12.532	0	1	1159100	+		30105	23315	21681	21847	29446	29446					0.11853140941957463
LGAQRLKSI	9	Unmodified	_LGAQRLKSI_					0	0	0			REV__ENSG00000206190|ENST00000555815|ATP10A	REV__ENSG00000206190|ENST00000555815|ATP10A	MULTI-SECPEP	A375_MHC_IP_R2	2	493.7105407714844	2	493.311284	984.608014	-0.55281	-0.00027271	-0.18173	-8.9652E-05	-0.73454	-0.00036236	493.3110874583356	40.079	0.40535	40.854	40.626	41.031	0.77451					12	7	2	0	0	0	0.52144	1	14819	14819		23.148	0	1	5659600	+		30106	22592	21682	21848	29447	29447					0.11509441951113786
LGAQTYRLI	9	Unmodified	_LGAQTYRLI_					0	0	0			REV__ENST00000490863.5_1_1:54653465-54661292:-|nuORF	REV__ENST00000490863.5_1_1:54653465-54661292:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1035.871826171875	1	1034.59931	1033.59203	0.48411	0.00050086	-1.5656	-0.0016198	-1.0815	-0.0011189	1035.6002035157894	127.63	0.1514	127.63	127.52	127.67	0					4	2	2	0	0	0	0.65721	1	48922	48922		10.824	1.4408	1	4906200	+		30107	25392	21683	21849	29448	29448					0.07657735714224145
LGARQAELTV	10	Unmodified	_LGARQAELTV_					0	0	0		nc|ENSG00000073008|P15151-3|PVR;nc|ENSG00000073008|P15151-2|PVR;nc|ENSG00000073008|P15151-4|PVR;ENST00000187830.2_1_19:45147391-45165075:+|nuORF;nc|ENSG00000073008|P15151|PVR;ENSG00000073008|ENST00000425690|PVR	nc|ENSG00000073008|P15151-3|PVR	nc|ENSG00000073008|P15151-3|PVR	MULTI-SECPEP	A375_MHC_IP_R1	1	529.1326904296875	2	529.303655	1056.59276	-0.95995	-0.0005081	0.2897	0.00015334	-0.67025	-0.00035477	529.3037848802857	67.98	0.15335	67.98	67.904	68.057	0					4	2	2	0	0	0	0.72086	1	24655	24655		18.146	0	1	502790			30108	1555	21684	21850	29449	29449					0.06672530363243823
LGARQFWRI	9	Unmodified	_LGARQFWRI_					0	0	0			REV__SIRPB2|p.G196R|1|0.38|ENSG00000196209|chr20:1478473-1478473|C/T|missense_variant	REV__SIRPB2|p.G196R|1|0.38|ENSG00000196209|chr20:1478473-1478473|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	382.9455261230469	3	382.889209	1145.6458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.684	1	51.438	50.938	51.938	0.75406								0	0	0	0.15283	1	19063	19063		16.149	1.7437	1		+		30109	27968	21685	21851	29450	29450					0.0787995293660515
LGARSRSLL	9	Unmodified	_LGARSRSLL_					0	0	0			REV__ENSG00000111241|ENST00000228837|FGF6	REV__ENSG00000111241|ENST00000228837|FGF6	MULTI-MSMS	A375_MHC_IP_R1	1	486.7159423828125	2	486.801083	971.587613	0.083585	4.0689E-05	-0.37857	-0.00018429	-0.29498	-0.0001436	486.8008274612645	39.028	0.30523	39.028	38.933	39.238	0					7	5	2	0	0	0	0.46038	1	13324	13324		21.747	2.3076	1	1091200	+		30110	17656	21686	21852	29451	29451					0.10068271291333986
LGASGAQGQD	10	Unmodified	_LGASGAQGQD_					0	0	0		ENST00000293190.9_1_17:72838445-72839279:-|nuORF	ENST00000293190.9_1_17:72838445-72839279:-|nuORF	ENST00000293190.9_1_17:72838445-72839279:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	451.6585388183594	2	452.211963	902.409374	-0.77477	-0.00035036	0.65626	0.00029677	-0.11852	-5.3594E-05	452.21271073142026	36.738	1.1191	37.509	37.207	38.327	0.7709					30	21	2	0	0	0	0.90853	1	13581	13581		15.847	0	1	10077000			30111	10480	21687	21853	29452	29452					-0.045734434183714257
LGASGLRAL	9	Unmodified	_LGASGLRAL_					0	0	0		ENST00000320442.8_1_12:58014065-58016599:+|nuORF;ENST00000474359.6_1_12:58013521-58016599:+|nuORF	ENST00000320442.8_1_12:58014065-58016599:+|nuORF	ENST00000320442.8_1_12:58014065-58016599:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	428.68670654296875	2	429.263802	856.513051	-0.15259	-6.5501E-05	0.30008	0.00012881	0.14749	6.3311E-05	429.2638966180477	64.084	0.50623	64.084	63.887	64.393	0					16	9	3	0	0	0	0.67483	1	23130	23130		10.074	0	1	1664700			30112	10690	21688	21854	29453	29453					0.07905508479939272
LGASLFHV	8	Unmodified	_LGASLFHV_					0	0	0			REV__ENST00000257177.8_1_1:52889499-52889643:-|nuORF	REV__ENST00000257177.8_1_1:52889499-52889643:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	422.6390075683594	2	422.239796	842.465038	-0.29326	-0.00012383	-0.69159	-0.00029202	-0.98485	-0.00041584	422.23948899086383	40.74	0.7119	41.515	41.133	41.845	0.77451					17	13	2	0	0	0	0.76683	1	15134	15134		15.768	1.1865	1	2535200	+		30113	23157	21689	21855	29454	29454					0.037504345598904365
LGASLFHV	8	Unmodified	_LGASLFHV_					0	0	0			REV__ENST00000257177.8_1_1:52889499-52889643:-|nuORF	REV__ENST00000257177.8_1_1:52889499-52889643:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	422.239796	842.465038	-0.29326	-0.00012383	-0.69159	-0.00029202	-0.98485	-0.00041584	422.23948899086383	40.74	0.7119	41.515	41.133	41.845	0.77451	-0.055867	0.00012129	NaN	15.768	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2535200	+		30114	23157	21689	21855							0.037504345598904365
LGASSVSLAI	10	Unmodified	_LGASSVSLAI_					0	0	0			REV__ENST00000598497.1_1_19:58600016-58601841:-|nuORF	REV__ENST00000598497.1_1_19:58600016-58601841:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	459.6579895019531	2	459.26875	916.522947	-0.29314	-0.00013463	-0.00134	-6.1543E-07	-0.29448	-0.00013525	459.26866432858577	48.095	1.3143	48.857	48.123	49.438	0.76127					68	25	4	0	0	0	0.71245	1	17780	17780		6.7232	1.9672	1	39588000	+		30115	26487	21690	21856	29455	29455					0.061346516946514384
LGAVDLRPL	9	Unmodified	_LGAVDLRPL_					0	0	0			REV__ENST00000369769.3_1_1:111216478-111216679:-|nuORF	REV__ENST00000369769.3_1_1:111216478-111216679:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	477.16180419921875	2	477.292559	952.570566	-0.43856	-0.00020932	-0.1113	-5.3125E-05	-0.54987	-0.00026245	477.2923356477347	77.869	0.46036	77.869	77.588	78.048	0					14	8	2	0	0	0	0.60917	1	28364	28364		25.399	0	1	3288500	+		30116	24016	21691	21857	29456	29456					0.09238350685495789
LGAVMVIQAGL	11	Unmodified	_LGAVMVIQAGL_					0	0	0			REV__UTP18|p.P261L|1|0.09|ENSG00000011260|chr17:51275936-51275936|C/T|missense_variant	REV__UTP18|p.P261L|1|0.09|ENSG00000011260|chr17:51275936-51275936|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	536.2133178710938	2	536.315177	1070.6158	-0.49125	-0.00026346	-1.2147	-0.00065146	-1.7059	-0.00091492	536.3145683476594	72.009	0.95882	72.009	71.565	72.524	0					38	18	3	0	0	0	0.94285	1	26122	26122		9.3831	2.66	1	13126000	+		30117	28973	21692	21858	29457	29457					0.08331833156398716
LGAVPLVRAI	10	Unmodified	_LGAVPLVRAI_					0	0	0		ENST00000331134.10_1_17:79525220-79525361:-|nuORF	ENST00000331134.10_1_17:79525220-79525361:-|nuORF	ENST00000331134.10_1_17:79525220-79525361:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1997985839844	2	504.831852	1007.64915	-0.67906	-0.00034281	-0.056826	-2.8688E-05	-0.73589	-0.0003715	504.8316485132772	76.181	0.71135	76.922	76.487	77.199	0.74052					15	13	2	0	0	0	0.9269	1	28967	28967		6.7232	0	1	1141000			30118	10767	21693	21859	29458	29458					0.14563202990586888
LGAVSKRG	8	Unmodified	_LGAVSKRG_					0	0	0			REV__ENSG00000165512|ENST00000298299|ZNF22	REV__ENSG00000165512|ENST00000298299|ZNF22	MULTI-SECPEP	A375_MHC_IP_R2	2	787.0037231445312	1	787.478463	786.471186	-0.97551	-0.0007682	0.4495	0.00035398	-0.52601	-0.00041422	787.4816483390283	123.73	0.20263	124.06	123.94	124.14	0.32969					5	3	2	0	0	0	0.972	1	47597	47597		0.79363	0	1	12375000	+		30119	20591	21694	21860	29459	29459					0.0694095279142175
LGAWLAPGSW	10	Unmodified	_LGAWLAPGSW_					0	0	0		ENST00000376592.5_2_1:11849260-11849482:-|nuORF	ENST00000376592.5_2_1:11849260-11849482:-|nuORF	ENST00000376592.5_2_1:11849260-11849482:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	353.6289978027344	3	353.187032	1056.53927	-0.15727	-5.5546E-05	-0.77166	-0.00027254	-0.92893	-0.00032809	353.18685381661584	27.377	0.40558	27.377	27.128	27.533	0					9	7	2	0	0	0	0.89109	1	8331	8331		1.9064	0	1	1816200			30120	11286	21695	21861	29460	29460					0.013257776514137731
LGCFCCST	8	Unmodified	_LGCFCCST_					0	0	0		ENST00000359543.7_1_16:10626712-10626751:-|nuORF	ENST00000359543.7_1_16:10626712-10626751:-|nuORF	ENST00000359543.7_1_16:10626712-10626751:-|nuORF	MSMS	A375_MHC_IP_R2	2	417.14874267578125	2	417.15316	832.291767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.2	1	139.26	138.76	139.76	0.059906								0	0	0	0.16876	1	54548	54548		2.5775	1.7838	1				30121	11016	21696	21862	29461	29461					-0.1310875887469365
LGCMMEFEHY	10	Unmodified	_LGCMMEFEHY_					0	0	0		ENST00000522398.5_1_8:67690272-67705900:+|nuORF	ENST00000522398.5_1_8:67690272-67705900:+|nuORF	ENST00000522398.5_1_8:67690272-67705900:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	630.011962890625	2	630.24832	1258.48209	-0.55602	-0.00035043	-1.868	-0.0011773	-2.424	-0.0015277	630.7462142810878	97.747	0.20409	97.747	97.641	97.845	0					5	3	2	0	0	0	0.93404	1	35913	35913		7.9102	0	1	616460			30122	13025	21697	21863	29462	29462					-0.136815170031241
LGCNYYHKP	9	Unmodified	_LGCNYYHKP_					0	0	0		ENSG00000142615|ENST00000359621|CELA2A	ENSG00000142615|ENST00000359621|CELA2A	ENSG00000142615|ENST00000359621|CELA2A	MSMS	A375_MHC_IP_R1	1	547.669677734375	2	547.758027	1093.5015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.383	1	72.383	71.883	72.883	0								0	0	0	0.1521	1	26333	26333		18.135	2.8865	1				30123	5317	21698	21864	29463	29463					-0.04151056605701342
LGDGLGPSTYQ	11	Unmodified	_LGDGLGPSTYQ_					0	0	0		ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000137860|ENST00000347644|SLC28A2	MULTI-SECPEP	A375_MHC_IP_R1	1	554.6697387695312	2	554.269478	1106.5244	-0.19711	-0.00010925	0.51251	0.00028407	0.3154	0.00017482	554.2699876024304	69.173	0.76125	69.173	68.869	69.631	0					30	13	3	0	0	0	0.94168	1	25068	25068		15.248	0	1	3819600			30124	4931	21699	21865	29464	29464					-0.02459759007251705
LGDLLWQV	8	Unmodified	_LGDLLWQV_					0	0	0			REV__ENST00000481328.7_1_11:76905078-76923312:+|nuORF	REV__ENST00000481328.7_1_11:76905078-76923312:+|nuORF	MSMS	A375_MHC_IP_R1	1	472.1900329589844	2	472.26601	942.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.271	1	85.271	84.771	85.771	0								0	0	0	0.16876	1	31248	31248		38.151	7.5146	1		+		30125	25259	21700	21866	29465	29465					0.043909729028428046
LGDPAGVTVR	10	Unmodified	_LGDPAGVTVR_					0	0	0		nc|ENSG00000160282|O95954-2|FTCD	nc|ENSG00000160282|O95954-2|FTCD	nc|ENSG00000160282|O95954-2|FTCD	MULTI-MSMS	A375_MHC_IP_R1	1	492.7165222167969	2	492.777274	983.539994	-0.29107	-0.00014343	0.14879	7.3318E-05	-0.14228	-7.0112E-05	492.7773215008545	54.695	0.91496	54.695	54.364	55.279	0					28	17	2	0	0	0	0.44858	1	19634	19634		31.268	0	1	22934000			30126	14710	21701	21867	29466	29466					0.047565723004936444
LGDRQNPD	8	Unmodified	_LGDRQNPD_					0	0	0			REV__ENST00000609454.5_1_22:38228707-38236239:-|nuORF	REV__ENST00000609454.5_1_22:38228707-38236239:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	457.256591796875	2	457.719956	913.425358	-0.21504	-9.8428E-05	0.25547	0.00011693	0.04043	1.8506E-05	457.71985532487804	34.9	0.81229	34.9	34.456	35.269	0					22	15	2	0	0	0	0.972	1	11373	11373		8.5933	5.598	1	5018100	+		30127	17051	21702	21868	29467	29467					-0.03481737181482458
LGDSFILLVQG	11	Unmodified	_LGDSFILLVQG_					0	0	0			REV__nc|ENSG00000172752|A8TX70-2|COL6A5	REV__nc|ENSG00000172752|A8TX70-2|COL6A5	MULTI-MSMS	A375_MHC_IP_R1	1	581.7294311523438	2	581.329339	1160.64412	-0.14981	-8.7086E-05	0.099171	5.7651E-05	-0.050635	-2.9435E-05	581.3292378841006	97.827	0.71151	97.827	97.389	98.101	0					31	13	3	0	0	0	0.23666	1	35922	35922		51.63	0.21458	1	4973900	+		30128	21167	21703	21869	29468	29468					0.07022854337333229
LGDSFILLVQG	11	Unmodified	_LGDSFILLVQG_					0	0	0			REV__nc|ENSG00000172752|A8TX70-2|COL6A5	REV__nc|ENSG00000172752|A8TX70-2|COL6A5	MULTI-SECPEP	A375_MHC_IP_R1	1	580.66650390625	2	581.329339	1160.64412	-0.14981	-8.7086E-05	0.099171	5.7651E-05	-0.050635	-2.9435E-05	581.3292378841006	97.827	0.71151	97.827	97.389	98.101	0					31	13	3	0	0	0	0.82939	1	35903	35903		23.79	1.0535	1	4973900	+		30129	21167	21703	21869	29469	29469					0.07022854337333229
LGDSSSSVLE	10	Unmodified	_LGDSSSSVLE_					0	0	0		nc|ENSG00000028310|Q9H8M2-6|BRD9;nc|ENSG00000028310|Q9H8M2-2|BRD9;ENST00000495794.5_1_5:864585-881375:-|nuORF;nc|ENSG00000028310|Q9H8M2-3|BRD9;nc|ENSG00000028310|Q9H8M2-1|BRD9;ENST00000495265.5_1_5:864585-889814:-|nuORF;ENSG00000028310|ENST00000467963|BRD9	nc|ENSG00000028310|Q9H8M2-6|BRD9	nc|ENSG00000028310|Q9H8M2-6|BRD9	MULTI-MSMS	A375_MHC_IP_R1	1	497.64013671875	2	497.240386	992.46622	-0.62007	-0.00030832	-0.52696	-0.00026203	-1.147	-0.00057035	497.24041706663587	25.872	1.5178	25.872	25.46	26.978	0					41	29	3	0	0	0	0.042144	1	7632	7632		78.149	16.792	1	16888000			30130	14458	21704	21870	29470	29470					-0.030314406525008053
LGDSSSSVLE	10	Unmodified	_LGDSSSSVLE_					0	0	0		nc|ENSG00000028310|Q9H8M2-6|BRD9;nc|ENSG00000028310|Q9H8M2-2|BRD9;ENST00000495794.5_1_5:864585-881375:-|nuORF;nc|ENSG00000028310|Q9H8M2-3|BRD9;nc|ENSG00000028310|Q9H8M2-1|BRD9;ENST00000495265.5_1_5:864585-889814:-|nuORF;ENSG00000028310|ENST00000467963|BRD9	nc|ENSG00000028310|Q9H8M2-6|BRD9	nc|ENSG00000028310|Q9H8M2-6|BRD9	MULTI-MSMS	A375_MHC_IP_R2	2	497.6398010253906	2	497.240386	992.46622	-0.93227	-0.00046356	-0.56634	-0.00028161	-1.4986	-0.00074517	497.2403278381068	25.287	0.8138	25.931	25.568	26.382	0.64368					31	15	3	0	0	0	0.042144	2	8446	8446;8564		78.149	16.792	1	14976000			30131	14458	21704	21870	29471;29472	29471					-0.030314406525008053
LGDTGKLVAL	10	Unmodified	_LGDTGKLVAL_					0	0	0		ENSG00000166479|ENST00000299608|TMX3	ENSG00000166479|ENST00000299608|TMX3	ENSG00000166479|ENST00000299608|TMX3	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1465148925781	2	493.797675	985.580796	-0.4506	-0.00022251	0.42918	0.00021193	-0.021418	-1.0576E-05	493.79796152837014	78.491	0.55804	79.235	78.88	79.438	0.74473					19	10	2	0	0	0	0.60238	1	29709	29709		26.268	0	1	2732700			30132	7080	21705	21871	29473	29473					0.08742913620085346
LGDTNFNEF	9	Unmodified	_LGDTNFNEF_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-MSMS	A375_MHC_IP_R2	2	529.13525390625	2	528.735271	1055.45599	-0.55546	-0.00029369	-0.091903	-4.8592E-05	-0.64736	-0.00034228	528.7352497351186	108.02	0.66499	108.78	108.35	109.02	0.75436					21	12	2	0	0	0	0.12592	1	40764	40764		46.021	6.0636	1	1441600	+		30133	22428	21706	21872	29474	29474					-0.06952003587093714
LGDVQTIPIQ	10	Unmodified	_LGDVQTIPIQ_					0	0	0		ENSG00000138380|ENST00000438828|CARF;nc|ENSG00000138380|Q8N187-3|CARF	ENSG00000138380|ENST00000438828|CARF	ENSG00000138380|ENST00000438828|CARF	MULTI-SECPEP	A375_MHC_IP_R2	2	541.7214965820312	2	542.305864	1082.59717	-0.74639	-0.00040477	-4.3639	-0.0023665	-5.1103	-0.0027713	542.3038691505732	92.273	0.60547	93.012	92.534	93.14	0.73902					13	11	2	0	0	0	0.6774	1	34952	34952		34.402	6.7729	1	1393100			30134	4986	21707	21873	29475	29475					0.05917994786182135
LGEEVVPETP	10	Unmodified	_LGEEVVPETP_					0	0	0		nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	MULTI-MSMS	A375_MHC_IP_R2	2	535.6736450195312	2	535.274229	1068.53391	-0.74703	-0.00039986	-0.32813	-0.00017564	-1.0752	-0.00057551	535.2738318612097	48.116	0.70445	48.877	48.632	49.336	0.76127					27	12	3	0	0	0	0.56082	1	18064	18064		34.402	1.616	1	7139800			30135	4147	21708	21874	29476	29476					0.0023800927829142893
LGEEVVPETP	10	Unmodified	_LGEEVVPETP_					0	0	0		nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	535.274229	1068.53391	-0.74703	-0.00039986	-0.32813	-0.00017564	-1.0752	-0.00057551	535.2738318612097	48.116	0.70445	48.877	48.632	49.336	0.76127	-0.013581	0.00024134	NaN	34.402	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7139800			30136	4147	21708	21874							0.0023800927829142893
LGEFIEVTV	9	Unmodified	_LGEFIEVTV_					0	0	0		ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2	ENSG00000118412|ENST00000551025|CASP8AP2	ENSG00000118412|ENST00000551025|CASP8AP2	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1739501953125	2	503.776408	1005.53826	-0.67413	-0.00033961	-2.7993	-0.0014102	-3.4734	-0.0017498	503.7741407403426	32.013	0.55693	32.749	32.555	33.112	0.73691					15	10	2	0	0	0	0.20094	1	11380	11380		53.576	20.79	1	1933600			30137	3541	21709	21875	29477	29477					0.03571518491844472
LGEFVEGFY	9	Unmodified	_LGEFVEGFY_					0	0	0			REV__ENSG00000101213|ENST00000542869|PTK6	REV__ENSG00000101213|ENST00000542869|PTK6	MSMS	A375_MHC_IP_R2	2	530.6640014648438	2	530.752933	1059.49131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.972	1	29.671	29.171	30.171	0.69872								0	0	0	0.14812	1	10073	10073		24.674	0.65332	1		+		30138	17150	21710	21876	29478	29478					-0.03605341059278544
LGEGAGFRGP	10	Unmodified	_LGEGAGFRGP_					0	0	0		ENST00000551451.5_1_12:29302213-29446237:+|nuORF;ENST00000549080.1_1_12:29302213-29324360:+|nuORF;ENST00000547411.1_1_12:29302213-29449968:+|nuORF	ENST00000551451.5_1_12:29302213-29446237:+|nuORF	ENST00000551451.5_1_12:29302213-29446237:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	961.5924682617188	1	960.489756	959.482479	0.089853	8.6303E-05	-0.61466	-0.00059038	-0.52481	-0.00050408	960.4890880791688	68.711	0.50601	68.711	68.463	68.969	0					20	9	3	0	0	0	0.6806	1	24878	24878		14.838	0	1	3955800			30139	13343	21711	21877	29479	29479					0.0011173009489766628
LGEGAGFRGP	10	Unmodified	_LGEGAGFRGP_					0	0	0		ENST00000551451.5_1_12:29302213-29446237:+|nuORF;ENST00000549080.1_1_12:29302213-29324360:+|nuORF;ENST00000547411.1_1_12:29302213-29449968:+|nuORF	ENST00000551451.5_1_12:29302213-29446237:+|nuORF	ENST00000551451.5_1_12:29302213-29446237:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	960.489756	959.482479	-0.018738	-1.7998E-05	-1.0989	-0.0010555	-1.1177	-0.0010735	960.4885859714678	68.02	0.55989	68.755	68.51	69.07	0.73512	0.021931	-0.00024147	NaN	14.838	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3854900			30140	13343	21711	21877							0.0011173009489766628
LGEHPEEPP	9	Unmodified	_LGEHPEEPP_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-MSMS	A375_MHC_IP_R1	1	504.1831970214844	2	502.737814	1003.46108	-0.54219	-0.00027258	-0.27514	-0.00013832	-0.81733	-0.0004109	502.73776622585206	27.053	2.5746	27.053	26.828	29.403	0					126	50	6	0	0	0	0.72507	1	8062	8062		4.756	0	1	1874599999.9999998			30141	14448	21712	21878	29480	29480					-0.04051699724482205
LGEHPPCLSL	10	Unmodified	_LGEHPPCLSL_					0	0	0			REV__ENST00000413751.1_1_2:158683134-158716644:-|nuORF	REV__ENST00000413751.1_1_2:158683134-158716644:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	533.6743774414062	2	533.273509	1064.53247	-0.64353	-0.00034318	2.2359	0.0011923	1.5923	0.00084916	533.27484116251	91.652	0.35806	92.386	92.172	92.53	0.7345					12	6	2	0	0	0	0.48072	1	34862	34862		46.021	8.047	1	1529900	+		30142	24497	21713	21879	29481	29481					0.00278096708530029
LGEIPRKEI	9	Unmodified	_LGEIPRKEI_					0	0	0		ENSG00000170037|ENST00000563694|CNTROB;nc|ENSG00000170037|Q8N137-3|CNTROB;nc|ENSG00000170037|Q8N137-2|CNTROB	ENSG00000170037|ENST00000563694|CNTROB	ENSG00000170037|ENST00000563694|CNTROB	MULTI-SECPEP	A375_MHC_IP_R1	1	528.2159423828125	2	527.816399	1053.61824	-0.88889	-0.00046917	0.26267	0.00013864	-0.62622	-0.00033053	527.8165373583844	38.3	0.40752	38.3	38.067	38.475	0					15	7	3	0	0	0	0.4465	1	12994	12994		31.268	3.6395	1	6420600			30143	7465	21714	21880	29482	29482					0.09358004885712035
LGEKEELY	8	Unmodified	_LGEKEELY_					0	0	0			REV__ENSG00000111405|ENST00000422538|ENDOU	REV__ENSG00000111405|ENST00000422538|ENDOU	MULTI-MSMS	A375_MHC_IP_R1	1	982.8619384765625	1	980.493504	979.486227	0.070275	6.8904E-05	-0.19843	-0.00019456	-0.12815	-0.00012565	980.4931759396698	76.802	0.96519	76.802	76.421	77.386	0					43	18	4	0	0	0	0.76248	1	27956	27956		16.942	1.0951	1	25320000	+		30144	17671	21715	21881	29483	29483					-0.004336449219181304
LGEKEELY	8	Unmodified	_LGEKEELY_					0	0	0			REV__ENSG00000111405|ENST00000422538|ENDOU	REV__ENSG00000111405|ENST00000422538|ENDOU	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	980.493504	979.486227	0.070275	6.8904E-05	-0.19843	-0.00019456	-0.12815	-0.00012565	980.4931759396698	76.802	0.96519	76.802	76.421	77.386	0	-0.010024	-2.3298E-05	NaN	16.942	43	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25320000	+		30145	17671	21715	21881							-0.004336449219181304
LGEKEELY	8	Unmodified	_LGEKEELY_					0	0	0			REV__ENSG00000111405|ENST00000422538|ENDOU	REV__ENSG00000111405|ENST00000422538|ENDOU	MULTI-MATCH	A375_MHC_IP_R2	2		1	980.493504	979.486227	0.0071994	7.059E-06	-0.14984	-0.00014692	-0.14264	-0.00013986	980.4932505062551	76.081	1.0145	76.822	76.436	77.451	0.74052	0.010024	2.4344E-05	NaN	16.942	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25976000	+		30146	17671	21715	21881							-0.004336449219181304
LGENYVFIR	9	Unmodified	_LGENYVFIR_					0	0	0			REV__ENST00000376681.7_1_17:46840236-46881289:-|nuORF	REV__ENST00000376681.7_1_17:46840236-46881289:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	371.2695617675781	3	370.869591	1109.58694	0.11457	4.2489E-05	-0.48713	-0.00018066	-0.37256	-0.00013817	370.8694171245241	71.951	0.50671	72.685	72.414	72.921	0.73421					18	9	2	0	0	0	0.79429	1	27356	27356		2.086	0	1	2146400	+		30147	21014	21716	21882	29484	29484					0.03653431851603273
LGEQNPPSI	9	Unmodified	_LGEQNPPSI_					0	0	0			REV__ENST00000427391.1_1_X:130964423-130964573:-|nuORF	REV__ENST00000427391.1_1_X:130964423-130964573:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	478.1483154296875	2	477.748182	953.481811	-0.57799	-0.00027613	-0.016287	-7.7813E-06	-0.59428	-0.00028392	477.7481489369199	127.63	0.25343	127.89	127.77	128.02	0.26593					6	4	2	0	0	0	0.38603	1	50106	50106		25.399	1.3787	1	5755900	+		30148	24665	21717	21883	29485	29485					0.0032089065517766358
LGERIERLK	9	Unmodified	_LGERIERLK_					0	0	0			REV__ENST00000402966.1_1_22:42090190-42091087:+|nuORF	REV__ENST00000402966.1_1_22:42090190-42091087:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	371.93255615234375	3	371.89614	1112.66659	0.17605	6.5472E-05	-0.23779	-8.8434E-05	-0.061742	-2.2962E-05	371.8960750651275	31.036	0.55706	31.036	30.806	31.363	0					24	10	3	0	0	0	0.50355	1	9889	9889		19.626	4.6688	1	2894400	+		30149	24415	21718	21884	29486	29486					0.114764985255988
LGERLGQLGG	10	Unmodified	_LGERLGQLGG_					0	0	0			REV__ENSG00000138080|ENST00000380320|EMILIN1	REV__ENSG00000138080|ENST00000380320|EMILIN1	MULTI-MSMS	A375_MHC_IP_R1	1	500.2159423828125	2	500.282723	998.550893	-0.098376	-4.9216E-05	0.047877	2.3952E-05	-0.050499	-2.5264E-05	500.2826546918924	126.53	1.5133	126.53	125.65	127.16	0					55	29	2	0	0	0	0.70012	1	48605	48605		12.241	1.4167	1	23222000	+		30150	19062	21719	21885	29487	29487					0.051559746747557256
LGERQRGGV	9	Unmodified	_LGERQRGGV_					0	0	0			REV__nc|ENSG00000173894|Q14781-2|CBX2	REV__nc|ENSG00000173894|Q14781-2|CBX2	MSMS	A375_MHC_IP_R2	2	486.2001647949219	2	486.27269	970.530826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.742	1	88.474	87.974	88.974	0.7318								0	0	0	0.14812	1	33376	33376		24.674	2.9272	1		+		30151	27366	21720	21886	29488	29488					0.04438223734814528
LGETWRSL	8	Unmodified	_LGETWRSL_					0	0	0		ENST00000420383.5_1_X:153176228-153178737:-|nuORF;ENST00000393721.5_2_X:153176228-153178737:-|nuORF	ENST00000420383.5_1_X:153176228-153178737:-|nuORF	ENST00000420383.5_1_X:153176228-153178737:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	481.6583251953125	2	481.258717	960.50288	-1.0039	-0.00048311	-0.00054541	-2.6248E-07	-1.0044	-0.00048338	481.2590616387766	56.819	0.86831	57.569	57.152	58.02	0.75015					25	16	2	0	0	0	0.75322	1	21534	21534		19.439	1.304	1	4019200			30152	11442	21721	21887	29489	29489					0.021049007546935172
LGEYLSSCFA	10	Unmodified	_LGEYLSSCFA_					0	0	0			REV__ATP2B1|p.R1125C|1|0.16|ENSG00000070961|chr12:89591274-89591274|G/A|missense_variant	REV__ATP2B1|p.R1125C|1|0.16|ENSG00000070961|chr12:89591274-89591274|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	545.7159423828125	2	545.2497	1088.48485	-0.7781	-0.00042426	-0.23649	-0.00012895	-1.0146	-0.0005532	545.2495527388049	131.15	0.20325	131.15	131.02	131.23	0					6	3	2	0	0	0	0.69306	1	50568	50568		13.906	1.3745	1	2776900	+		30153	15477	21722	21888	29490	29490					-0.055856022823036255
LGEYLSSCFA	10	Unmodified	_LGEYLSSCFA_					0	0	0			REV__ATP2B1|p.R1125C|1|0.16|ENSG00000070961|chr12:89591274-89591274|G/A|missense_variant	REV__ATP2B1|p.R1125C|1|0.16|ENSG00000070961|chr12:89591274-89591274|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	545.2497	1088.48485	-0.7781	-0.00042426	-0.23649	-0.00012895	-1.0146	-0.0005532	545.2495527388049	131.15	0.20325	131.15	131.02	131.23	0	0.0076175	-0.00058289	NaN	13.906	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2776900	+		30154	15477	21722	21888							-0.055856022823036255
LGEYLSSCFA	10	Unmodified	_LGEYLSSCFA_					0	0	0			REV__ATP2B1|p.R1125C|1|0.16|ENSG00000070961|chr12:89591274-89591274|G/A|missense_variant	REV__ATP2B1|p.R1125C|1|0.16|ENSG00000070961|chr12:89591274-89591274|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	545.2497	1088.48485	-0.8004	-0.00043642	0.70802	0.00038605	-0.092378	-5.0369E-05	545.2498957407153	130.92	0.15314	131.14	131.06	131.21	0.2142	-0.0076175	0.0004471	NaN	13.906	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2803300	+		30155	15477	21722	21888							-0.055856022823036255
LGFLGPLGIY	10	Unmodified	_LGFLGPLGIY_					0	0	0			REV__ENSG00000196739|ENST00000356083|COL27A1	REV__ENSG00000196739|ENST00000356083|COL27A1	MULTI-SECPEP	A375_MHC_IP_R1	1	525.7025146484375	2	525.305136	1048.59572	-0.54993	-0.00028888	-2.0358	-0.0010694	-2.5857	-0.0013583	525.3045906617898	80.195	1.074	80.195	79.316	80.39	0					27	20	2	0	0	0	0.37407	1	29273	29273		49.669	3.929	1	4040100	+		30156	22228	21723	21889	29491	29491					0.07336405488103992
LGFLGPLGIY	10	Unmodified	_LGFLGPLGIY_					0	0	0			REV__ENSG00000196739|ENST00000356083|COL27A1	REV__ENSG00000196739|ENST00000356083|COL27A1	MULTI-SECPEP	A375_MHC_IP_R2	2	525.158447265625	2	525.305136	1048.59572	-0.38176	-0.00020054	-2.2787	-0.001197	-2.6605	-0.0013976	525.3047762108728	79.338	1.2163	80.083	79.033	80.249	0.74473					39	23	4	0	0	0	0.37407	1	30097	30097		49.669	9.2203	1	3910800	+		30157	22228	21723	21889	29492	29492					0.07336405488103992
LGFLREHL	8	Unmodified	_LGFLREHL_					0	0	0		nc|ENSG00000254536|Q6QHF9-4|PAOX;ENST00000368535.2_1_10:135193041-135204956:+|nuORF;ENSG00000148832|ENST00000278060|PAOX	nc|ENSG00000254536|Q6QHF9-4|PAOX	nc|ENSG00000254536|Q6QHF9-4|PAOX	MULTI-MSMS	A375_MHC_IP_R2	2	493.18438720703125	2	492.784902	983.55525	-0.75662	-0.00037285	-0.42771	-0.00021077	-1.1843	-0.00058362	492.78456540434865	56.173	0.61234	56.923	56.54	57.152	0.75015					19	11	2	0	0	0	0.72008	1	21196	21196		28.487	1.6032	1	9041000			30158	5765	21724	21890	29493	29493					0.06281483888312778
LGFQAAWV	8	Unmodified	_LGFQAAWV_					0	0	0		nc|ENSG00000211813|A0A0B4J273|TRAV34	nc|ENSG00000211813|A0A0B4J273|TRAV34	nc|ENSG00000211813|A0A0B4J273|TRAV34	MSMS	A375_MHC_IP_R2	2	446.18902587890625	2	446.239796	890.465038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.659	1	68.395	67.895	68.895	0.73631								0	0	0	0.16876	1	25636	25636		8.5933	0.68312	1				30159	14885	21725	21891	29494	29494					0.015424345598944456
LGFSVGPF	8	Unmodified	_LGFSVGPF_					0	0	0			REV__SLC38A6|p.S42F|1|0.78|ENSG00000139974|chr14:60982527-60982527|C/T|missense_variant	REV__SLC38A6|p.S42F|1|0.78|ENSG00000139974|chr14:60982527-60982527|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	412.6212158203125	2	412.221072	822.42759	-0.26297	-0.0001084	-0.38624	-0.00015922	-0.64921	-0.00026762	412.220884243129	71.844	0.75752	72.578	72.264	73.021	0.73421					21	14	2	0	0	0	0.72109	1	27263	27263		28.173	0	1	2357600	+		30160	27992	21726	21892	29495	29495					0.009273432942904947
LGFWFLFFWRV	11	Unmodified	_LGFWFLFFWRV_					0	0	0			REV__ENST00000432176.6_1_7:22984841-22985015:-|nuORF	REV__ENST00000432176.6_1_7:22984841-22985015:-|nuORF	MSMS	A375_MHC_IP_R1	1	759.5411376953125	2	759.408258	1516.80196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.3	1	123.3	122.8	123.8	0								0	0	0	0.16297	1	46057	46057		3.2813	0.28607	1		+		30161	24712	21727	21893	29496	29496					0.06423398387187262
LGFYQKGRRRW	11	Unmodified	_LGFYQKGRRRW_					0	0	0		ENST00000471115.5_1_1:85718343-85724278:-|nuORF	ENST00000471115.5_1_1:85718343-85724278:-|nuORF	ENST00000471115.5_1_1:85718343-85724278:-|nuORF	MSMS	A375_MHC_IP_R1	1	489.5015563964844	3	489.609105	1465.80549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.614	1	62.614	62.114	63.114	0								0	0	0	0.16301	1	22619	22619		3.0723	0.44103	1				30162	12349	21728	21894	29497	29497					0.09121461213771909
LGGAFPAWSL	10	Unmodified	_LGGAFPAWSL_					0	0	0		ENST00000357503.2_1_9:140172250-140173205:+|nuORF	ENST00000357503.2_1_9:140172250-140173205:+|nuORF	ENST00000357503.2_1_9:140172250-140173205:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	510.4510498046875	2	509.77146	1017.52837	-1.1411	-0.00058168	-4.2183	-0.0021504	-5.3594	-0.0027321	509.76954446997337	59.019	0.60948	59.766	59.387	59.996	0.74714					14	11	2	0	0	0	0.83086	1	22400	22400		10.824	0	1	931400			30163	10983	21729	21895	29498	29498					0.0203037527712695
LGGAMGMGPGW	11	Unmodified	_LGGAMGMGPGW_					0	0	0			REV__ENST00000454475.1_1_2:74534830-74534989:-|nuORF	REV__ENST00000454475.1_1_2:74534830-74534989:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	517.2129516601562	2	517.23333	1032.45211	-0.65652	-0.00033957	-0.69955	-0.00036183	-1.3561	-0.00070141	517.2328478337687	87.616	0.90962	88.348	88.016	88.925	0.7318					39	17	3	0	0	0	0.69619	1	33394	33394		15.847	5.7733	1	6294800	+		30164	24918	21730	21896	29499	29499					-0.06282087886143017
LGGARLLGV	9	Unmodified	_LGGARLLGV_					0	0	0		ENST00000323078.7_1_7:150034543-150034807:+|nuORF	ENST00000323078.7_1_7:150034543-150034807:+|nuORF	ENST00000323078.7_1_7:150034543-150034807:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	428.67431640625	2	428.27417	854.533787	-0.34662	-0.00014845	0.26	0.00011135	-0.086628	-3.71E-05	428.274225259113	66.314	0.96982	67.05	66.78	67.75	0.73631					32	18	3	0	0	0	0.2264	1	25119	25119		36.044	3.9272	1	5111500			30165	10709	21731	21897	29500	29500					0.10070098859625887
LGGARRRQL	9	Unmodified	_LGGARRRQL_					0	0	0		ENST00000426548.5_1_17:42908027-42908075:-|nuORF	ENST00000426548.5_1_17:42908027-42908075:-|nuORF	ENST00000426548.5_1_17:42908027-42908075:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	513.6005249023438	2	513.817599	1025.62064	-0.31405	-0.00016137	3.0949	0.0015902	2.7809	0.0014289	513.8191713401103	47.911	0.30186	47.911	47.668	47.97	0					8	5	2	0	0	0	0.40041	1	16851	16851		23.148	0	1	864470			30166	11808	21732	21898	29501	29501					0.10885898134029048
LGGAVVPR	8	Unmodified	_LGGAVVPR_					0	0	0			REV__ENST00000377658.8_1_1:6655614-6659217:-|nuORF	REV__ENST00000377658.8_1_1:6655614-6659217:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	384.60833740234375	2	384.739963	767.465373	0.30157	0.00011603	-0.012699	-4.8857E-06	0.28888	0.00011114	384.7399086322747	33.924	0.45564	33.924	33.698	34.154	0					13	8	2	0	0	0	0.90851	1	11182	11182		24.21	7.1234	1	2695000	+		30167	24164	21733	21899	29502	29502					0.0723385427975245
LGGAVWGV	8	Unmodified	_LGGAVWGV_					0	0	0			REV__nc|ENSG00000066405|P56856-2|CLDN18	REV__nc|ENSG00000066405|P56856-2|CLDN18	MULTI-SECPEP	A375_MHC_IP_R2	2	379.26568603515625	2	379.713414	757.412274	-0.37392	-0.00014198	0.48885	0.00018562	0.11493	4.364E-05	379.7135961357091	56.723	0.61167	57.473	57.255	57.867	0.75015					16	11	2	0	0	0	0.972	1	21484	21484		2.8892	0	1	1597100	+		30168	16515	21734	21900	29503	29503					0.023864764970994656
LGGCCYSH	8	Unmodified	_LGGCCYSH_					0	0	0			REV__nc|ENSG00000117114|O95490-3|ADGRL2	REV__nc|ENSG00000117114|O95490-3|ADGRL2	MULTI-SECPEP	A375_MHC_IP_R1	1	839.8821411132812	1	839.31747	838.310194	-0.35945	-0.00030169	-4.2885	-0.0035994	-4.648	-0.0039011	839.3107338406563	128.87	0.3067	128.87	128.68	128.99	0					7	5	2	0	0	0	0.972	1	49565	49565		0	0	1	1527300	+		30169	17992	21735	21901	29504	29504					-0.11542880908484676
LGGDLASINN	10	Unmodified	_LGGDLASINN_					0	0	0		ENSG00000260314|ENST00000569591|MRC1	ENSG00000260314|ENST00000569591|MRC1	ENSG00000260314|ENST00000569591|MRC1	MULTI-SECPEP	A375_MHC_IP_R2	2	486.6915283203125	2	487.251089	972.487624	-0.58863	-0.00028681	-0.88301	-0.00043025	-1.4716	-0.00071706	487.25073852745226	82.83	0.45416	83.573	83.397	83.851	0.74293					11	8	2	0	0	0	0.61429	1	31429	31429		18.146	0	1	1041900			30170	9931	21736	21902	29505	29505					0.0002798916684696451
LGGEDKMIT	9	Oxidation (M)	_LGGEDKM(Oxidation (M))IT_		LGGEDKM(1)IT		LGGEDKM(46)IT	0	0	1		ENSG00000157796|ENST00000399820|WDR19;nc|ENSG00000157796|Q8NEZ3-2|WDR19;ENST00000512448.1_1_4:39201144-39207357:+|nuORF	ENSG00000157796|ENST00000399820|WDR19	ENSG00000157796|ENST00000399820|WDR19	MULTI-MSMS	A375_MHC_IP_R1	1	490.6419372558594	2	490.241875	978.469197	-0.050925	-2.4966E-05	0.73057	0.00035816	0.67965	0.00033319	490.2421672248761	108.79	0.81056	108.79	108.51	109.32	0					39	15	3	0	0	0	0.12592	1	39874	39874		46.021	20.622	1	14607000			30171	6266	21737	21903	29506	29506		337			-0.020898887993553217
LGGEDKMIT	9	Oxidation (M)	_LGGEDKM(Oxidation (M))IT_					0	0	1		ENSG00000157796|ENST00000399820|WDR19;nc|ENSG00000157796|Q8NEZ3-2|WDR19;ENST00000512448.1_1_4:39201144-39207357:+|nuORF	ENSG00000157796|ENST00000399820|WDR19	ENSG00000157796|ENST00000399820|WDR19	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	490.241875	978.469197	-0.54663	-0.00026798	1.0035	0.00049193	0.45682	0.00022395	490.2423274549295	108.08	1.175	108.84	108.51	109.68	0.75436	0.023316	0.00012422	NaN	46.021	51	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14749000			30172	6266	21737	21903				337			-0.020898887993553217
LGGEKALEGL	10	Unmodified	_LGGEKALEGL_					0	0	0		ANKRD35|p.G606E|1|0.44|ENSG00000198483|chr1:145872952-145872952|C/T|missense_variant	ANKRD35|p.G606E|1|0.44|ENSG00000198483|chr1:145872952-145872952|C/T|missense_variant	ANKRD35|p.G606E|1|0.44|ENSG00000198483|chr1:145872952-145872952|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	493.6868591308594	2	493.779482	985.544411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.54	1	63.283	62.783	63.783	0.74263								0	0	0	0.13854	1	23706	23706		30.637	1.555	1				30173	144	21738	21904	29507	29507					0.05106036723384477
LGGFRHGL	8	Unmodified	_LGGFRHGL_					0	0	0			REV__ENSG00000007520|ENST00000007390|TSR3	REV__ENSG00000007520|ENST00000007390|TSR3	MULTI-SECPEP	A375_MHC_IP_R2	2	429.14361572265625	2	428.743037	855.471521	-0.1318	-5.6507E-05	1.5676	0.0006721	1.4358	0.0006156	428.74359371068545	84.043	0.6152	84.782	84.407	85.022	0.73962					22	11	2	0	0	0	0.972	1	31888	31888		5.7604	0	1	1755000	+		30174	16160	21739	21905	29508	29508					0.03800372511284422
LGGFRHGL	8	Unmodified	_LGGFRHGL_					0	0	0			REV__ENSG00000007520|ENST00000007390|TSR3	REV__ENSG00000007520|ENST00000007390|TSR3	MULTI-MATCH	A375_MHC_IP_R1	1		2	428.743037	855.471521	-0.3414	-0.00014637	1.4684	0.00062957	1.127	0.0004832	428.74360095236375	84.949	0.81569	84.949	84.697	85.513	0	0.083449	-1.933E-05	NaN	5.7604	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1930400	+		30175	16160	21739	21905							0.03800372511284422
LGGFVHIFLF	10	Unmodified	_LGGFVHIFLF_					0	0	0		L1PB1_dup12829|chr21:46585548-46587567:+|1.182533549073013|0.3950341382787979|1.58|465.0|107|2|anti-sense	L1PB1_dup12829|chr21:46585548-46587567:+|1.182533549073013|0.3950341382787979|1.58|465.0|107|2|anti-sense	L1PB1_dup12829|chr21:46585548-46587567:+|1.182533549073013|0.3950341382787979|1.58|465.0|107|2|anti-sense	MULTI-SECPEP	A375_MHC_IP_R1	1	384.28643798828125	3	383.886694	1148.63825	0.26327	0.00010107	-0.89322	-0.0003429	-0.62995	-0.00024183	384.22086375417126	34.765	0.6573	34.765	34.203	34.861	0					27	12	3	0	0	0	0.67143	1	11427	11427		7.1017	0	1	10575000			30176	14271	21740	21906	29509	29509					0.06987800616298045
LGGGEEDEGL	10	Unmodified	_LGGGEEDEGL_					0	0	0		ENSG00000162592|ENST00000294600|CCDC27	ENSG00000162592|ENST00000294600|CCDC27	ENSG00000162592|ENST00000294600|CCDC27	MSMS	A375_MHC_IP_R2	2	488.1686706542969	2	488.216911	974.41927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.22	1	107.98	107.48	108.48	0.75436								0	0	0	0.15047	1	40511	40511		16.942	3.0362	1				30177	6554	21741	21907	29510	29510					-0.06896300203652572
LGGGLSLW	8	Unmodified	_LGGGLSLW_					0	0	0			REV__ENSG00000138308|ENST00000373032|PLA2G12B	REV__ENSG00000138308|ENST00000373032|PLA2G12B	MULTI-MSMS	A375_MHC_IP_R2	2	802.6116943359375	1	802.445766	801.438489	-0.97384	-0.00078146	0.98729	0.00079225	0.01345	1.0793E-05	802.4465836790234	96.468	0.50688	97.224	96.962	97.469	0.75587					15	9	2	0	0	0	0.41058	1	36677	36677		52.693	18.506	1	1952200	+		30178	19082	21742	21908	29511	29511					0.029827456685779907
LGGGLSLW	8	Unmodified	_LGGGLSLW_					0	0	0			REV__ENSG00000138308|ENST00000373032|PLA2G12B	REV__ENSG00000138308|ENST00000373032|PLA2G12B	MULTI-MATCH	A375_MHC_IP_R1	1		1	802.445766	801.438489	-0.32611	-0.00026168	-0.12323	-9.8886E-05	-0.44934	-0.00036057	802.445770062734	97.349	0.55457	97.349	97.086	97.641	0	0.062401	-0.00032407	NaN	52.693	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1678900	+		30179	19082	21742	21908							0.029827456685779907
LGGGLSLW	8	Unmodified	_LGGGLSLW_					0	0	0			REV__ENSG00000138308|ENST00000373032|PLA2G12B	REV__ENSG00000138308|ENST00000373032|PLA2G12B	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	802.445766	801.438489	-0.97384	-0.00078146	0.98729	0.00079225	0.01345	1.0793E-05	802.4465836790234	96.468	0.50688	97.224	96.962	97.469	0.75587	-0.062401	0.00056706	NaN	52.693	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1952200	+		30180	19082	21742	21908							0.029827456685779907
LGGKGQGGPV	10	Unmodified	_LGGKGQGGPV_					0	0	0			REV__nc|ENSG00000172819|P13631-3|RARG	REV__nc|ENSG00000172819|P13631-3|RARG	MULTI-SECPEP	A375_MHC_IP_R2	2	434.6684265136719	2	435.245609	868.476666	-0.38147	-0.00016603	-0.45014	-0.00019592	-0.83162	-0.00036196	435.2453514819499	51.049	0.40455	51.803	51.615	52.019	0.75406					11	7	2	0	0	0	0.65982	1	19135	19135		26.884	12.978	1	1263300	+		30181	21174	21743	21909	29512	29512					0.03716631583245089
LGGLDNVEYYD	11	Unmodified	_LGGLDNVEYYD_					0	0	0		ENSG00000122550|ENST00000339077|KLHL7;nc|ENSG00000122550|Q8IXQ5-5|KLHL7;nc|ENSG00000122550|Q8IXQ5-2|KLHL7	ENSG00000122550|ENST00000339077|KLHL7	ENSG00000122550|ENST00000339077|KLHL7	MSMS	A375_MHC_IP_R2	2	419.9247131347656	3	419.859309	1256.5561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.787	1	30.486	29.986	30.986	0.69872								0	0	0	0.14647	1	10428	10428		13.519	12.064	1				30182	3790	21744	21910	29513	29513					-0.061918110439592056
LGGLGLGLAG	10	Unmodified	_LGGLGLGLAG_					0	0	0		nc|ENSG00000174332|Q8NBF1|GLIS1;ENSG00000174332|ENST00000628545|GLIS1	nc|ENSG00000174332|Q8NBF1|GLIS1	nc|ENSG00000174332|Q8NBF1|GLIS1	MULTI-MSMS	A375_MHC_IP_R1	1	414.6529235839844	2	414.252903	826.491253	0.54588	0.00022613	-0.38797	-0.00016072	0.1579	6.5412E-05	414.2526782927276	92.475	0.66015	92.475	92.16	92.821	0					19	12	2	0	0	0	0.2945	1	33985	33985		40.449	0	1	1741600			30183	7870	21745	21911	29514	29514					0.07106703731381003
LGGLGLGLAG	10	Unmodified	_LGGLGLGLAG_					0	0	0		nc|ENSG00000174332|Q8NBF1|GLIS1;ENSG00000174332|ENST00000628545|GLIS1	nc|ENSG00000174332|Q8NBF1|GLIS1	nc|ENSG00000174332|Q8NBF1|GLIS1	MULTI-MSMS	A375_MHC_IP_R2	2	414.652587890625	2	414.252903	826.491253	0.096463	3.996E-05	-0.099776	-4.1333E-05	-0.0033126	-1.3722E-06	414.25276761898374	91.616	0.65872	92.351	92.021	92.68	0.7345					17	12	2	0	0	0	0.2945	1	34864	34864		40.449	0	1	3660200			30184	7870	21745	21911	29515	29515					0.07106703731381003
LGGLGRREV	9	Unmodified	_LGGLGRREV_					0	0	0		ENST00000280614.3_1_4:139937158-139964261:+|nuORF	ENST00000280614.3_1_4:139937158-139964261:+|nuORF	ENST00000280614.3_1_4:139937158-139964261:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	478.201904296875	2	478.785433	955.556313	-0.62016	-0.00029693	-0.65483	-0.00031352	-1.275	-0.00061045	478.78502753576123	128.34	1.4709	128.58	128.35	129.82	0.23946					59	28	3	0	0	0	0.77244	1	50805	50805		0.6015	0	1	166400000			30185	10420	21746	21912	29516	29516					0.0767569825721921
LGGLKKGKLLI	11	Unmodified	_LGGLKKGKLLI_					0	0	0			REV__ENSG00000187091|ENST00000334661|PLCD1	REV__ENSG00000187091|ENST00000334661|PLCD1	MULTI-SECPEP	A375_MHC_IP_R2	2	569.669189453125	2	570.397359	1138.78016	-0.31064	-0.00017719	1.8103	0.0010326	1.4997	0.0008554	570.3977002559263	80.238	0.20141	80.983	80.86	81.062	0.74473					5	3	2	0	0	0	0.99526	1	30473	30473		0	0	1	538670	+		30186	22007	21747	21913	29517	29517					0.21632593638651088
LGGLSSPLR	9	Unmodified	_LGGLSSPLR_					0	0	0		nc|ENSG00000135835|Q5VZ46-2|KIAA1614;ENSG00000135835|ENST00000367588|KIAA1614	nc|ENSG00000135835|Q5VZ46-2|KIAA1614	nc|ENSG00000135835|Q5VZ46-2|KIAA1614	MULTI-SECPEP	A375_MHC_IP_R1	1	450.6585693359375	2	450.269084	898.523616	0.2747	0.00012369	-0.48139	-0.00021675	-0.20669	-9.3066E-05	450.26882301791676	48.603	0.55729	48.603	48.375	48.933	0					16	10	2	0	0	0	0.39388	1	17219	17219		25.399	0	1	5476200			30187	4717	21748	21914	29518	29518					0.07029491134369437
LGGMILRH	8	Unmodified	_LGGMILRH_					0	0	0			REV__MRPS11|p.G164R|1|0.08|ENSG00000181991|chr15:88477884-88477884|G/A|missense_variant	REV__MRPS11|p.G164R|1|0.08|ENSG00000181991|chr15:88477884-88477884|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	448.6589050292969	2	448.760372	895.506192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.734	1	45.503	45.003	46.003	0.7691								0	0	0	0.16876	1	16704	16704		6.3541	0	1		+		30188	27039	21749	21915	29519	29519					0.05425872327725756
LGGNRRISF	9	Unmodified	_LGGNRRISF_					0	0	0		ENSG00000170484|ENST00000305620|KRT74;CON__Q7RTS7;KRT74|p.S52N|1|0.49|ENSG00000170484|chr12:52573623-52573623|C/T|missense_variant;KRT74|p.G67Wfs*62|1|0.46|ENSG00000170484|chr12:52573569-52573579|GCCCGAACGCC/-|frameshift_variant	ENSG00000170484|ENST00000305620|KRT74	ENSG00000170484|ENST00000305620|KRT74	MULTI-SECPEP	A375_MHC_IP_R1	1	510.9736328125	2	510.290882	1018.56721	-0.76776	-0.00039178	-0.70328	-0.00035888	-1.471	-0.00075066	510.29059607002097	26.427	0.25338	26.427	26.322	26.575	0					5	4	2	0	0	0	0.74651	1	7924	7924		4.756	2.6963	1	714570		+	30189	629	21750	21916	29520	29520					0.05867100631519406
LGGPCPEC	8	Unmodified	_LGGPCPEC_					0	0	0			REV__ENSG00000010327|ENST00000321725|STAB1	REV__ENSG00000010327|ENST00000321725|STAB1	MULTI-SECPEP	A375_MHC_IP_R1	1	776.0311889648438	1	775.311322	774.304046	0.0033232	2.5765E-06	1.4079	0.0010916	1.4112	0.0010942	775.3137074497757	126.94	0.25192	126.94	126.76	127.01	0					6	4	2	0	0	0	0.972	1	48545	48545		6.3541	0	1	4354100	+		30190	16194	21751	21917	29521	29521					-0.09213399140003276
LGGQAPTRQ	9	Unmodified	_LGGQAPTRQ_					0	0	0			REV__ENSG00000166546|ENST00000536005|BEAN1	REV__ENSG00000166546|ENST00000536005|BEAN1	MULTI-SECPEP	A375_MHC_IP_R1	1	464.65362548828125	2	464.253966	926.493378	0.16262	7.5499E-05	-0.25155	-0.00011678	-0.088923	-4.1283E-05	464.2537457281164	113.42	2.2337	113.42	111.52	113.75	0					68	43	2	0	0	0	0.78348	1	41061	41061		1.8442	1.4435	1	3022100	+		30191	20684	21752	21918	29522	29522					0.027191324691898444
LGGQKRAF	8	Unmodified	_LGGQKRAF_					0	0	0		ENST00000577043.1_1_16:2867692-2871170:+|nuORF	ENST00000577043.1_1_16:2867692-2871170:+|nuORF	ENST00000577043.1_1_16:2867692-2871170:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	439.6662902832031	2	438.756144	875.497735	-0.89302	-0.00039182	0.61365	0.00026924	-0.27937	-0.00012258	438.756311678912	37.171	0.40456	37.942	37.716	38.12	0.7709					17	7	3	0	0	0	0.76683	1	13559	13559		15.768	0	1	9786100			30192	13646	21753	21919	29523	29523					0.05500641682749574
LGGSLQLQSL	10	Unmodified	_LGGSLQLQSL_					0	0	0		ENST00000394950.7_1_16:31123427-31123583:+|nuORF;ENSG00000103507|ENST00000219794|BCKDK	ENST00000394950.7_1_16:31123427-31123583:+|nuORF	ENST00000394950.7_1_16:31123427-31123583:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	508.71832275390625	2	508.292756	1014.57096	-0.37089	-0.00018852	0.042793	2.1751E-05	-0.32809	-0.00016677	508.2930477973439	103.17	0.61046	103.17	102.76	103.37	0					16	11	3	0	0	0	0.76414	1	37769	37769		26.884	7.4447	1	1114800			30193	2457	21754	21920	29524	29524					0.06425725614712974
LGGSLQLQSL	10	Unmodified	_LGGSLQLQSL_					0	0	0		ENST00000394950.7_1_16:31123427-31123583:+|nuORF;ENSG00000103507|ENST00000219794|BCKDK	ENST00000394950.7_1_16:31123427-31123583:+|nuORF	ENST00000394950.7_1_16:31123427-31123583:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	508.292756	1014.57096	-0.72852	-0.0003703	0.13482	6.8528E-05	-0.59371	-0.00030178	508.2927766316137	102.27	0.55965	103.03	102.77	103.33	0.76428	-0.071735	4.9639E-05	NaN	26.884	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	763210			30194	2457	21754	21920							0.06425725614712974
LGGSVFPKLNW	11	Unmodified	_LGGSVFPKLNW_					0	0	0		ENSG00000151465|ENST00000281141|CDC123	ENSG00000151465|ENST00000281141|CDC123	ENSG00000151465|ENST00000281141|CDC123	MULTI-SECPEP	A375_MHC_IP_R2	2	609.1993408203125	2	609.337498	1216.66044	-0.39439	-0.00024032	-1.1938	-0.00072744	-1.5882	-0.00096775	609.8383448551082	83.898	0.20671	84.637	84.508	84.715	0.73962					5	3	2	0	0	0	0.98748	1	31908	31908		2.7352	0	1	567790			30195	5908	21755	21921	29525	29525					0.06077980294094232
LGGTTFSTSVP	11	Unmodified	_LGGTTFSTSVP_					0	0	0			REV__nc|ENSG00000168477|P22105-1|TNXB	REV__nc|ENSG00000168477|P22105-1|TNXB	MULTI-SECPEP	A375_MHC_IP_R1	1	533.6478881835938	2	533.774396	1065.53424	-0.44846	-0.00023937	-0.66902	-0.00035711	-1.1175	-0.00059648	534.275431847294	47.895	0.55511	47.895	47.668	48.223	0					14	10	2	0	0	0	0.88538	1	16848	16848		8.7454	0	1	887580	+		30196	20858	21756	21922	29526	29526					0.004094289981594557
LGGWLVDR	8	Unmodified	_LGGWLVDR_					0	0	0		ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	MULTI-MSMS	A375_MHC_IP_R1	1	458.6559143066406	2	458.255977	914.497401	-0.20763	-9.5146E-05	0.054989	2.5199E-05	-0.15264	-6.9947E-05	458.25598215252734	57.313	0.50949	57.313	57.059	57.568	0					19	9	3	0	0	0	0.71451	1	20554	20554		30.225	0	1	4161100			30197	4829	21757	21923	29527	29527					0.03673221962901607
LGGWLVDR	8	Unmodified	_LGGWLVDR_					0	0	0		ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	458.255977	914.497401	-0.65376	-0.00029959	0.42283	0.00019376	-0.23093	-0.00010582	458.25610712018465	56.367	0.61186	57.117	56.745	57.356	0.75015	-0.097979	0.00018037	NaN	30.225	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7143700			30198	4829	21757	21923							0.03673221962901607
LGGYWGNK	8	Unmodified	_LGGYWGNK_					0	0	0		nc|ENSG00000185133|Q15735-3|INPP5J;nc|ENSG00000185133|Q15735-2|INPP5J;ENSG00000185133|ENST00000331075|INPP5J	nc|ENSG00000185133|Q15735-3|INPP5J	nc|ENSG00000185133|Q15735-3|INPP5J	MULTI-SECPEP	A375_MHC_IP_R1	1	448.1268005371094	2	447.727052	893.439552	-0.082025	-3.6725E-05	0.00033381	1.4945E-07	-0.081691	-3.6575E-05	447.7270682631549	44.035	0.51017	44.035	43.757	44.267	0					15	9	2	0	0	0	0.69059	1	15377	15377		46.921	18.748	1	1848700			30199	8644	21758	21924	29528	29528					-0.011430399625282917
LGGYWGNK	8	Unmodified	_LGGYWGNK_					0	0	0		nc|ENSG00000185133|Q15735-3|INPP5J;nc|ENSG00000185133|Q15735-2|INPP5J;ENSG00000185133|ENST00000331075|INPP5J	nc|ENSG00000185133|Q15735-3|INPP5J	nc|ENSG00000185133|Q15735-3|INPP5J	MULTI-MATCH	A375_MHC_IP_R2	2		2	447.727052	893.439552	-0.21549	-9.6483E-05	-0.02203	-9.8635E-06	-0.23752	-0.00010635	447.7270946715856	43.196	0.45587	43.968	43.674	44.13	0.7724	-0.03349	-1.1572E-05	NaN	46.921	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1605100			30200	8644	21758	21924							-0.011430399625282917
LGHCCDCYCH	10	Unmodified	_LGHCCDCYCH_					0	0	0		ENST00000471987.1_1_1:207958419-207959036:+|nuORF;ENST00000367041.5_1_1:207958419-207963612:+|nuORF;ENST00000480003.5_1_1:207958419-207966884:+|nuORF	ENST00000471987.1_1_1:207958419-207959036:+|nuORF	ENST00000471987.1_1_1:207958419-207959036:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	576.7442626953125	2	577.187739	1152.36093	-0.071961	-4.1535E-05	4.2822	0.0024716	4.2103	0.0024301	577.190951147648	95.826	0.20369	96.577	96.449	96.653	0.75045					5	3	2	0	0	0	0.94819	1	36402	36402		0	0	1	507350			30201	11076	21759	21925	29529	29529					-0.20916042917451705
LGHHSPPEPE	10	Unmodified	_LGHHSPPEPE_					0	0	0		ENSG00000110324|ENST00000227752|IL10RA;ENST00000530761.5_1_11:117857521-117870353:+|nuORF;IL10RA|p.A421V|1|0.51|ENSG00000110324|chr11:117999166-117999166|C/T|missense_variant	ENSG00000110324|ENST00000227752|IL10RA	ENSG00000110324|ENST00000227752|IL10RA	MULTI-MSMS	A375_MHC_IP_R1	1	550.6615600585938	2	550.261988	1098.50942	-0.73462	-0.00040423	-0.23087	-0.00012704	-0.9655	-0.00053128	550.2619609806972	129.52	0.20416	129.52	129.4	129.6	0					6	3	2	0	0	0	0.66712	1	49849	49849		15.847	1.9411	1	6243400			30202	2930	21760	21926	29530	29530					-0.035892060845753804
LGHHSPPEPE	10	Unmodified	_LGHHSPPEPE_					0	0	0		ENSG00000110324|ENST00000227752|IL10RA;ENST00000530761.5_1_11:117857521-117870353:+|nuORF;IL10RA|p.A421V|1|0.51|ENSG00000110324|chr11:117999166-117999166|C/T|missense_variant	ENSG00000110324|ENST00000227752|IL10RA	ENSG00000110324|ENST00000227752|IL10RA	MULTI-MATCH	A375_MHC_IP_R2	2		2	550.261988	1098.50942	-0.82868	-0.00045599	-1.4749	-0.00081156	-2.3035	-0.0012676	550.2631425074427	129.26	0.30301	129.5	129.31	129.62	0.23946	-0.013656	-0.0013547	NaN	15.847	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2580600			30203	2930	21760	21926							-0.035892060845753804
LGHKKEKVL	9	Unmodified	_LGHKKEKVL_					0	0	0		tr|U7T3S4|U7T3S4_FUSNUBifunctionalproteinGlmUOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmUPE=3SV=1	tr|U7T3S4|U7T3S4_FUSNUBifunctionalproteinGlmUOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmUPE=3SV=1	tr|U7T3S4|U7T3S4_FUSNUBifunctionalproteinGlmUOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmUPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	526.7341918945312	2	526.334759	1050.65496	-0.5255	-0.00027659	-0.37563	-0.00019771	-0.90113	-0.0004743	526.3345490070844	61.253	0.30632	61.253	61.075	61.382	0					9	5	2	0	0	0	0.69507	1	22113	22113		19.257	7.0163	1	2286800			30204	29984	21761	21927	29531	29531					0.13166301502269562
LGHKVAGCL	9	Unmodified	_LGHKVAGCL_					0	0	0		ENST00000409465.5_1_2:191874614-191878272:-|nuORF	ENST00000409465.5_1_2:191874614-191878272:-|nuORF	ENST00000409465.5_1_2:191874614-191878272:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	449.1164855957031	2	449.25238	896.490207	-0.4887	-0.00021955	2.3785	0.0010686	1.8898	0.000849	449.2545951214787	35.749	0.30624	36.512	36.384	36.69	0.76338					8	5	2	0	0	0	0.67221	1	13018	13018		8.5933	2.8329	1	1545300			30205	11635	21762	21928	29532	29532					0.03782166090820738
LGHLPPLSL	9	Unmodified	_LGHLPPLSL_					0	0	0			REV__nc|ENSG00000077092|P10826|RARB	REV__nc|ENSG00000077092|P10826|RARB	MULTI-SECPEP	A375_MHC_IP_R1	1	474.1482849121094	2	473.789653	945.564752	-0.42305	-0.00020044	0.54646	0.0002589	0.1234	5.8467E-05	473.7898398967597	91.814	0.40433	91.814	91.655	92.059	0					12	7	2	0	0	0	0.62767	1	33745	33745		11.64	0	1	922250	+		30206	27116	21763	21929	29533	29533					0.08979252173844543
LGHQAPSH	8	Unmodified	_LGHQAPSH_					0	0	0		ENSG00000130528|ENST00000252825|HRC	ENSG00000130528|ENST00000252825|HRC	ENSG00000130528|ENST00000252825|HRC	MULTI-MSMS	A375_MHC_IP_R2	2	846.9619140625	1	846.421676	845.4144	-0.62035	-0.00052507	2.9808	0.0025231	2.3605	0.001998	846.4228206245373	119.07	0.15186	119.6	119.48	119.63	0.5321					4	2	2	0	0	0	0.77603	2	45242	45242;45264		9.3474	2.9933	1	9606300			30207	4251	21764	21930	29534;29535	29534					-0.014490947650983799
LGHQLLKW	8	Unmodified	_LGHQLLKW_					0	0	0		nc|ENSG00000184343|Q9UPE1-2|SRPK3;nc|ENSG00000184343|Q9UPE1-3|SRPK3;nc|ENSG00000184343|Q9UPE1-4|SRPK3;ENSG00000184343|ENST00000370101|SRPK3	nc|ENSG00000184343|Q9UPE1-2|SRPK3	nc|ENSG00000184343|Q9UPE1-2|SRPK3	MULTI-SECPEP	A375_MHC_IP_R2	2	497.6489562988281	2	497.795269	993.575986	-0.65477	-0.00032594	0.3293	0.00016393	-0.32547	-0.00016202	497.7947433726631	51.213	0.35553	51.965	51.763	52.118	0.75225					9	6	2	0	0	0	0.972	1	19197	19197		5.7604	3.4577	1	1208600			30208	8571	21765	21931	29536	29536					0.07894074267983342
LGHRGSGK	8	Unmodified	_LGHRGSGK_					0	0	0		tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	406.11846923828125	2	406.230294	810.446034	0.047423	1.9265E-05	0.17439	7.0844E-05	0.22182	9.0109E-05	406.2302830562174	98.91	2.843	99.669	97.271	100.11	0.75977					77	55	2	0	0	0	0.972	1	37656	37656		5.2307	0	1	4052400			30209	30023	21766	21932	29537	29537					0.03322897988857676
LGHSYHEEWDF	11	Unmodified	_LGHSYHEEWDF_					0	0	0			REV__ENSG00000002587|ENST00000002596|HS3ST1	REV__ENSG00000002587|ENST00000002596|HS3ST1	MSMS	A375_MHC_IP_R1	1	710.470458984375	2	710.301841	1418.58913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.771	1	94.771	94.271	95.271	0								0	0	0	0.1629	1	34833	34833		3.5965	0	1		+		30210	16087	21767	21933	29538	29538					-0.10342184201249438
LGICMLLTI	9	Unmodified	_LGICMLLTI_					0	0	0		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-MSMS	A375_MHC_IP_R1	1	489.1817932128906	2	488.782124	975.549696	0.14287	6.9834E-05	2.4626	0.0012037	2.6055	0.0012735	488.78314462158306	113.22	0.85971	113.22	112.59	113.45	0					25	16	2	0	0	0	0.1209	1	41434	41434		46.921	0.89992	1	3610000			30211	2734	21768	21934	29539	29539					0.06094300989991552
LGIDCRLC	8	Carbamidomethyl (C)	_LGIDC(Carbamidomethyl (C))RLC_	LGIDC(0.5)RLC(0.5)		LGIDC(0)RLC(0)		0	1	0			REV__KDM5B|p.P1092L|1|0.34|ENSG00000117139|chr1:202735577-202735577|G/A|missense_variant	REV__KDM5B|p.P1092L|1|0.34|ENSG00000117139|chr1:202735577-202735577|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	475.6332092285156	2	475.23333	948.452107	-0.56318	-0.00026764	0.85437	0.00040602	0.29119	0.00013838	475.23363878096376	87.513	0.66246	87.513	87.186	87.848	0					29	12	3	0	0	0	0.45507	1	32050	32050		50.855	6.448	2	8429300	+		30212	26837	21769	21935	29540	29540	86;87				-0.024180878861557176
LGIDCRLC	8	Carbamidomethyl (C)	_LGIDC(Carbamidomethyl (C))RLC_					0	1	0			REV__KDM5B|p.P1092L|1|0.34|ENSG00000117139|chr1:202735577-202735577|G/A|missense_variant	REV__KDM5B|p.P1092L|1|0.34|ENSG00000117139|chr1:202735577-202735577|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	475.23333	948.452107	-0.40827	-0.00019402	1.193	0.00056693	0.78468	0.00037291	475.233765345038	86.733	0.76307	87.466	87.151	87.914	0.733	-0.023437	0.00019547	NaN	50.855	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7227700	+		30213	26837	21769	21935			86;87				-0.024180878861557176
LGIDLGTTSV	10	Unmodified	_LGIDLGTTSV_					0	0	0		ENSG00000197417|ENST00000225519|SHPK	ENSG00000197417|ENST00000225519|SHPK	ENSG00000197417|ENST00000225519|SHPK	MULTI-SECPEP	A375_MHC_IP_R1	1	487.65777587890625	2	488.27149	974.528426	-0.52968	-0.00025863	0.064029	3.1264E-05	-0.46565	-0.00022736	488.2712854246306	66.804	1.4763	66.804	66.428	67.904	0					47	28	4	0	0	0	0.16517	1	24219	24219		52.268	0	1	10229000			30214	9155	21770	21936	29541	29541					0.04014330486484141
LGIDLGTTSV	10	Unmodified	_LGIDLGTTSV_					0	0	0		ENSG00000197417|ENST00000225519|SHPK	ENSG00000197417|ENST00000225519|SHPK	ENSG00000197417|ENST00000225519|SHPK	MULTI-SECPEP	A375_MHC_IP_R2	2	488.6709899902344	2	488.27149	974.528426	-0.65672	-0.00032066	-0.090142	-4.4014E-05	-0.74687	-0.00036467	488.2713891404656	62.495	0.45644	63.237	63.028	63.484	0.74263					20	8	3	0	0	0	0.48072	1	23696	23696		46.021	0	1	6440900			30215	9155	21770	21936	29542	29542					0.04014330486484141
LGIPEDCDD	9	Unmodified	_LGIPEDCDD_					0	0	0		ENSG00000235961|ENST00000421798|PNMA6A	ENSG00000235961|ENST00000421798|PNMA6A	ENSG00000235961|ENST00000421798|PNMA6A	MULTI-MSMS	A375_MHC_IP_R1	1	489.28546142578125	2	488.70004	975.385527	-0.33007	-0.0001613	2.2219	0.0010859	1.8919	0.00092455	488.7011878467462	87.456	0.35564	87.456	87.289	87.644	0					11	6	2	0	0	0	0.43185	1	32144	32144		23.148	2.2772	1	851920			30216	9747	21771	21937	29543	29543					-0.10315044967069298
LGIPKDPRQW	10	Unmodified	_LGIPKDPRQW_					0	0	0		nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-5|ETS1;nc|ENSG00000134954|P14921-2|ETS1;ETS1|p.Q249Pfs*5|1|0.74|ENSG00000134954|chr11:128480438-128480439|-/C|frameshift_variant	nc|ENSG00000134954|P14921|ETS1	nc|ENSG00000134954|P14921|ETS1	MULTI-SECPEP	A375_MHC_IP_R1	1	404.2961120605469	3	403.89614	1208.66659	-0.45077	-0.00018206	-1.4146	-0.00057136	-1.8654	-0.00075342	403.8962501009167	60.511	1.4264	60.511	59.955	61.382	0					37	27	2	0	0	0	0.84881	1	21787	21787		19.987	12.51	1	3125600			30217	14614	21772	21938	29544	29544					0.07060498525629555
LGIPRATTV	9	Unmodified	_LGIPRATTV_					0	0	0		ENST00000369214.2_1_6:100062108-100062660:+|nuORF	ENST00000369214.2_1_6:100062108-100062660:+|nuORF	ENST00000369214.2_1_6:100062108-100062660:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	464.6488342285156	2	464.284734	926.554916	-0.63556	-0.00029508	0.68628	0.00031863	0.050713	2.3545E-05	464.28493950444107	68.133	0.65701	68.133	67.704	68.361	0					19	12	2	0	0	0	0.64808	1	24563	24563		11.64	3.047	1	1233100			30218	11128	21773	21939	29545	29545					0.08870064168468161
LGISPERNRR	10	Unmodified	_LGISPERNRR_					0	0	0		ENST00000432777.5_1_22:31479185-31479230:+|nuORF	ENST00000432777.5_1_22:31479185-31479230:+|nuORF	ENST00000432777.5_1_22:31479185-31479230:+|nuORF	MSMS	A375_MHC_IP_R1	1	399.65106201171875	3	399.898544	1196.6738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.429	1	17.429	16.929	17.929	0								0	0	0	0.15637	1	4092	4092		0.15932	0.064481	1				30219	11883	21774	21940	29546	29546					0.08333231126016472
LGIVATTGV	9	Unmodified	_LGIVATTGV_					0	0	0		nc|ENSG00000196296|O14983|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983-3|ATP2A1	nc|ENSG00000196296|O14983|ATP2A1	nc|ENSG00000196296|O14983|ATP2A1	MULTI-SECPEP	A375_MHC_IP_R2	2	416.1524658203125	2	415.752736	829.490919	-0.21363	-8.8816E-05	0.41361	0.00017196	0.19998	8.3141E-05	415.7527035647929	97.041	0.40502	97.797	97.569	97.974	0.75586					12	7	2	0	0	0	0.73662	1	36859	36859		9.3474	0	1	1598600			30220	9024	21775	21941	29547	29547					0.06935284011524345
LGIWESESI	9	Unmodified	_LGIWESESI_					0	0	0		ENST00000551825.1_1_12:101673946-101684681:+|nuORF	ENST00000551825.1_1_12:101673946-101684681:+|nuORF	ENST00000551825.1_1_12:101673946-101684681:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1953735351562	2	517.263665	1032.51278	-0.68457	-0.00035411	0.020571	1.0641E-05	-0.664	-0.00034346	517.2635302260188	104.75	1.3222	105.51	105.16	106.48	0.76308					59	25	3	0	0	0	0.67221	1	39530	39530		4.756	4.2312	1	17771000			30221	13384	21776	21942	29548	29548					-0.00217956030564892
LGKHPVAP	8	Unmodified	_LGKHPVAP_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-SECPEP	A375_MHC_IP_R2	2	818.0418090820312	1	818.488299	817.481023	-0.61788	-0.00050573	0.71228	0.00058299	0.094403	7.7268E-05	818.4895117502492	113.73	0.39959	114.44	114.33	114.73	0.70985					11	7	2	0	0	0	0.972	1	42935	42935		2.8892	2.0956	1	2834500	+		30222	16952	21777	21943	29549	29549					0.0649814079679345
LGKISLKTGER	11	Unmodified	_LGKISLKTGER_					0	0	0		ENST00000361337.2_1_20:39725925-39726861:+|nuORF	ENST00000361337.2_1_20:39725925-39726861:+|nuORF	ENST00000361337.2_1_20:39725925-39726861:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	401.1654052734375	3	401.24695	1200.71902	-0.39847	-0.00015988	-1.3737	-0.00055121	-1.7722	-0.00071109	401.246312281096	57.227	0.30608	57.977	57.814	58.12	0.74936					8	5	2	0	0	0	0.69069	1	21584	21584		16.275	2.7559	1	463870			30223	11042	21778	21944	29550	29550					0.1266903686855585
LGKKWTLL	8	Unmodified	_LGKKWTLL_					0	0	0		ENSG00000184985|ENST00000507866|SORCS2	ENSG00000184985|ENST00000507866|SORCS2	ENSG00000184985|ENST00000507866|SORCS2	MSMS	A375_MHC_IP_R2	2	479.64849853515625	2	479.807845	957.601138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.521	1	95.266	94.766	95.766	0.74474								0	0	0	0.16876	1	35919	35919		5.7604	0	1				30224	8625	21779	21945	29551	29551					0.12064129070574836
LGKLIKISP	9	Unmodified	_LGKLIKISP_					0	0	0			REV__ENSG00000004846|ENST00000404938|ABCB5	REV__ENSG00000004846|ENST00000404938|ABCB5	MULTI-MSMS	A375_MHC_IP_R2	2	968.7138671875	1	968.650279	967.643003	-0.073656	-7.1347E-05	-2.1982	-0.0021293	-2.2719	-0.0022007	968.6492906775945	122.58	0.40401	122.96	122.67	123.07	0.37661					9	7	2	0	0	0	0.75523	1	46945	46945		2.0598	1.2661	1	196230000	+		30225	16101	21780	21946	29552	29552					0.1578868475909303
LGKNKRLL	8	Unmodified	_LGKNKRLL_					0	0	0			REV__ENSG00000115568|ENST00000411696|ZNF142	REV__ENSG00000115568|ENST00000411696|ZNF142	MULTI-SECPEP	A375_MHC_IP_R2	2	471.71600341796875	2	471.316369	940.618185	-0.62662	-0.00029534	0.31952	0.00015059	-0.3071	-0.00014474	471.31644694087527	64.987	0.4063	65.725	65.511	65.917	0.73811					11	7	2	0	0	0	0.94479	1	24658	24658		13.508	0.97634	1	1489000	+		30226	17894	21781	21947	29553	29553					0.14550049676358867
LGKPVSFGT	9	Unmodified	_LGKPVSFGT_					0	0	0		ENSG00000183722|ENST00000379589|LHFPL6	ENSG00000183722|ENST00000379589|LHFPL6	ENSG00000183722|ENST00000379589|LHFPL6	MULTI-SECPEP	A375_MHC_IP_R1	1	452.6610107421875	2	453.258185	904.501818	-0.36139	-0.0001638	0.36642	0.00016608	0.0050316	2.2806E-06	453.2583829623205	46.858	0.66676	46.858	46.596	47.263	0					16	12	2	0	0	0	0.53748	1	16419	16419		8.7454	2.0222	1	1472500			30227	8522	21782	21948	29554	29554					0.045746863858198594
LGKQRART	8	Unmodified	_LGKQRART_					0	0	0			REV__ENST00000375199.7_1_1:19570195-19571411:-|nuORF	REV__ENST00000375199.7_1_1:19570195-19571411:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	465.6854248046875	2	465.2856	928.556647	-0.59357	-0.00027618	0.85572	0.00039815	0.26215	0.00012197	465.2859096744934	126.3	0.70763	126.59	126.38	127.09	0.2951					24	13	3	0	0	0	0.77741	1	49388	49388		4.3292	0	1	15577000	+		30228	24122	21783	21949	29555	29555					0.08951117977085232
LGKQTVNHS	9	Unmodified	_LGKQTVNHS_					0	0	0		ENST00000488261.6_3_10:135271820-135304727:+|nuORF	ENST00000488261.6_3_10:135271820-135304727:+|nuORF	ENST00000488261.6_3_10:135271820-135304727:+|nuORF	MSMS	A375_MHC_IP_R1	1	492.45074462890625	2	492.267073	982.519593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.717	1	30.717	30.217	31.217	0								0	0	0	0.15486	1	9786	9786		11.64	0	1				30229	12613	21784	21950	29556	29556					0.027634016406636874
LGKSPNLAV	9	Unmodified	_LGKSPNLAV_					0	0	0		ENST00000397332.2_1_1:40361592-40361802:-|nuORF	ENST00000397332.2_1_1:40361592-40361802:-|nuORF	ENST00000397332.2_1_1:40361592-40361802:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	450.1708679199219	2	449.77146	897.528367	-0.55915	-0.00025149	-1.2573	-0.00056549	-1.8164	-0.00081698	449.7713994694005	61.938	0.65789	62.68	62.37	63.028	0.74263					22	12	2	0	0	0	0.50702	1	23492	23492		25.399	12.868	1	2100600			30230	11504	21785	21951	29557	29557					0.07550375277128296
LGKVKMTER	9	Unmodified	_LGKVKMTER_					0	0	0			REV__PGC|p.E35V|1|0.3|ENSG00000096088|chr6:41744764-41744764|T/A|missense_variant	REV__PGC|p.E35V|1|0.3|ENSG00000096088|chr6:41744764-41744764|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	354.2937316894531	3	354.54271	1060.6063	-0.53241	-0.00018876	0.67978	0.00024101	0.14738	5.2252E-05	354.54287015268494	57.652	0.81019	58.401	58.019	58.829	0.74894					31	15	3	0	0	0	0.41409	1	21843	21843		17.443	0.32975	1	10397000	+		30231	27770	21786	21952	29558	29558					0.0784206487087431
LGKVNQFVSL	10	Unmodified	_LGKVNQFVSL_					0	0	0			REV__ENSG00000275520|ENST00000611003|FAM236A	REV__ENSG00000275520|ENST00000611003|FAM236A	MULTI-MSMS	A375_MHC_IP_R2	2	369.2577209472656	3	368.885241	1103.63389	0.28996	0.00010696	0.30171	0.0001113	0.59167	0.00021826	368.8851668231658	42.236	1.072	43.008	42.196	43.268	0.7724					29	20	2	0	0	0	0.72006	1	15386	15386		3.3196	0.24738	1	2658000	+		30232	22935	21787	21953	29559	29559					0.08622291402775772
LGLAGWAA	8	Unmodified	_LGLAGWAA_					0	0	0		ENST00000567780.1_1_12:54377735-54378077:-|nuORF	ENST00000567780.1_1_12:54377735-54378077:-|nuORF	ENST00000567780.1_1_12:54377735-54378077:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	380.1133117675781	2	379.713414	757.412274	0.38978	0.000148	-0.78537	-0.00029822	-0.3956	-0.00015021	379.71291367774074	57.213	0.91584	57.213	56.804	57.72	0					21	17	2	0	0	0	0.77781	1	20537	20537		2.8892	0	1	1845900			30233	13574	21788	21954	29560	29560					0.023864764970767283
LGLAPGGLAV	10	Unmodified	_LGLAPGGLAV_					0	0	0		ENST00000600632.1_1_19:15534992-15535583:-|nuORF;nc|ENSG00000011451|O95785-2|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785-3|WIZ;nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ	ENST00000600632.1_1_19:15534992-15535583:-|nuORF	ENST00000600632.1_1_19:15534992-15535583:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	434.6684265136719	2	434.268553	866.522553	-0.35849	-0.00015568	-0.083337	-3.6191E-05	-0.44183	-0.00019187	434.26854731560655	50.784	0.55514	51.538	51.311	51.866	0.75406					24	10	3	0	0	0	0.67143	1	19135	19135		32.117	6.7177	1	2579700			30234	1002	21789	21955	29561	29561					0.08395276765475046
LGLDHWQV	8	Unmodified	_LGLDHWQV_					0	0	0			REV__ENST00000548972.5_1_12:113545343-113573291:-|nuORF	REV__ENST00000548972.5_1_12:113545343-113573291:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	483.615966796875	2	484.253434	966.492316	-0.4549	-0.00022028	-1.5613	-0.00075608	-2.0162	-0.00097637	484.2537473103965	86.649	0.2541	87.382	87.255	87.509	0.733					6	4	2	0	0	0	0.96296	1	32993	32993		10.183	2.2732	1	1151800	+		30235	26022	21790	21956	29562	29562					0.0077291810027873
LGLDSCHVV	9	Unmodified	_LGLDSCHVV_					0	0	0			REV__ENSG00000106819|ENST00000375544|ASPN	REV__ENSG00000106819|ENST00000375544|ASPN	MSMS	A375_MHC_IP_R2	2	471.6684875488281	2	471.739302	941.464052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.404	1	85.14	84.64	85.64	0.73601								0	0	0	0.14812	1	32085	32085		24.674	0	1		+		30236	17467	21791	21957	29563	29563					-0.009021478713066244
LGLDWAGCDT	10	Unmodified	_LGLDWAGCDT_					0	0	0			REV__ENST00000388942.7_1_15:76448950-76463338:+|nuORF	REV__ENST00000388942.7_1_15:76448950-76463338:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	526.131103515625	2	525.731674	1049.4488	-0.40793	-0.00021446	-0.68777	-0.00036158	-1.0957	-0.00057604	525.7313906287103	48.197	0.70445	48.955	48.628	49.332	0.75737					21	13	2	0	0	0	0.60556	1	18125	18125		20.454	2.3186	1	2090800	+		30237	24250	21792	21958	29564	29564					-0.07395059459167896
LGLEKTASISI	11	Unmodified	_LGLEKTASISI_					0	0	0		ENST00000532294.1_1_6:26370710-26373574:+|nuORF;ENST00000531055.1_1_6:26370743-26373574:+|nuORF;ENST00000480110.5_1_6:26445933-26448699:+|nuORF;nc|ENSG00000186470|P78410-3|BTN3A2;nc|ENSG00000186470|P78410-2|BTN3A2;ENST00000082468.11_1_6:26405791-26410201:+|nuORF;ENSG00000186470|ENST00000377708|BTN3A2;nc|ENSG00000026950|O00481-2|BTN3A1;nc|ENSG00000026950|O00481-3|BTN3A1;nc|ENSG00000026950|O00481-4|BTN3A1;ENSG00000026950|ENST00000289361|BTN3A1;nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3	ENST00000532294.1_1_6:26370710-26373574:+|nuORF	ENST00000532294.1_1_6:26370710-26373574:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	566.7341918945312	2	566.334621	1130.65469	-0.07198	-4.0765E-05	-0.092312	-5.228E-05	-0.16429	-9.3045E-05	566.334498941834	45.409	0.55463	45.409	45.183	45.738	0					23	10	3	0	0	0	0.53535	1	15879	15879		47.594	1.8545	1	11508000			30238	1097	21793	21959	29565	29565					0.0945883699175738
LGLEKTASISI	11	Unmodified	_LGLEKTASISI_					0	0	0		ENST00000532294.1_1_6:26370710-26373574:+|nuORF;ENST00000531055.1_1_6:26370743-26373574:+|nuORF;ENST00000480110.5_1_6:26445933-26448699:+|nuORF;nc|ENSG00000186470|P78410-3|BTN3A2;nc|ENSG00000186470|P78410-2|BTN3A2;ENST00000082468.11_1_6:26405791-26410201:+|nuORF;ENSG00000186470|ENST00000377708|BTN3A2;nc|ENSG00000026950|O00481-2|BTN3A1;nc|ENSG00000026950|O00481-3|BTN3A1;nc|ENSG00000026950|O00481-4|BTN3A1;ENSG00000026950|ENST00000289361|BTN3A1;nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3	ENST00000532294.1_1_6:26370710-26373574:+|nuORF	ENST00000532294.1_1_6:26370710-26373574:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	566.734130859375	2	566.334621	1130.65469	-0.42799	-0.00024239	-0.41385	-0.00023438	-0.84184	-0.00047676	566.3343975905773	44.466	0.55842	45.235	44.985	45.543	0.7691					20	10	3	0	0	0	0.53535	1	16594	16594		47.594	20.371	1	5485400			30239	1097	21793	21959	29566	29566					0.0945883699175738
LGLFPIHGMM	10	Unmodified	_LGLFPIHGMM_					0	0	0		ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	MULTI-MSMS	A375_MHC_IP_R1	1	558.9446411132812	2	558.290648	1114.56674	-0.38574	-0.00021536	1.4727	0.00082222	1.087	0.00060686	558.2919562436991	82.698	0.86093	82.698	82.214	83.075	0					39	16	3	0	0	0	0.70334	1	30146	30146		12.532	2.4576	1	6263300			30240	4917	21794	21960	29567	29567					0.014042215957942972
LGLFPIHGMM	10	Unmodified	_LGLFPIHGMM_					0	0	0		ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	558.290648	1114.56674	-0.77334	-0.00043175	1.7191	0.00095974	0.94574	0.000528	558.2922470229481	81.944	1.218	82.687	82.179	83.397	0.74293	-0.0055238	0.00016588	NaN	12.532	51	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4851900			30241	4917	21794	21960							0.014042215957942972
LGLGHWQV	8	Unmodified	_LGLGHWQV_					0	0	0			REV__ENST00000520820.1_1_8:103251674-103256308:+|nuORF	REV__ENST00000520820.1_1_8:103251674-103256308:+|nuORF	MSMS	A375_MHC_IP_R2	2	455.1816711425781	2	455.250695	908.486836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.173	1	42.946	42.446	43.446	0.7724								0	0	0	0.16876	1	15680	15680		15.768	3.2367	1		+		30242	25708	21795	21961	29568	29568					0.028932393084801333
LGLGLSGVTL	10	Unmodified	_LGLGLSGVTL_					0	0	0			REV__ENSG00000155714|ENST00000424898|PDZD9	REV__ENSG00000155714|ENST00000424898|PDZD9	MULTI-MSMS	A375_MHC_IP_R1	1	465.68670654296875	2	465.286943	928.559333	-0.31691	-0.00014746	0.14421	6.7098E-05	-0.17271	-8.0358E-05	465.2869036373263	65.049	0.55984	65.049	64.851	65.411	0					13	10	2	0	0	0	0.23156	1	23571	23571		46.021	0	1	888670	+		30243	19933	21796	21962	29569	29569					0.092195285913931
LGLGLSGVTL	10	Unmodified	_LGLGLSGVTL_					0	0	0			REV__ENSG00000155714|ENST00000424898|PDZD9	REV__ENSG00000155714|ENST00000424898|PDZD9	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	465.286943	928.559333	-0.31691	-0.00014746	0.14421	6.7098E-05	-0.17271	-8.0358E-05	465.2869036373263	65.049	0.55984	65.049	64.851	65.411	0	0.11183	0.00010899	NaN	46.021	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	888670	+		30244	19933	21796	21962							0.092195285913931
LGLGSLITEL	10	Unmodified	_LGLGSLITEL_					0	0	0		ENSG00000122728|ENST00000242310|TAF1L;nc|ENSG00000147133|P21675-25|TAF1;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675|TAF1;ENSG00000147133|ENST00000423759|TAF1;nc|ENSG00000147133|P21675-1|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-13|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-21|TAF1;nc|ENSG00000147133|P21675-24|TAF1;nc|ENSG00000147133|P21675-23|TAF1;TAF1|p.L947Rfs*2|1|0.51|ENSG00000147133|chrX:71392630-71392630|T/-|frameshift_variant	ENSG00000122728|ENST00000242310|TAF1L	ENSG00000122728|ENST00000242310|TAF1L	MULTI-SECPEP	A375_MHC_IP_R1	1	508.59515380859375	2	508.305332	1014.59611	-0.31199	-0.00015859	-0.94536	-0.00048053	-1.2573	-0.00063912	508.3047053683743	70.979	0.35926	70.979	70.8	71.159	0					16	6	3	0	0	0	0.61429	1	25790	25790		18.146	0	1	2116800			30245	3804	21797	21963	29570	29570					0.08939780417267684
LGLHTSSE	8	Unmodified	_LGLHTSSE_					0	0	0			REV__AluSz6_dup1796|chr1:67400941-67401246:+|1.058030927564177|0.0476212013984591|4.47|444.0|21|3|anti-sense	REV__AluSz6_dup1796|chr1:67400941-67401246:+|1.058030927564177|0.0476212013984591|4.47|444.0|21|3|anti-sense	MULTI-MSMS	A375_MHC_IP_R2	2	422.1581115722656	2	422.213975	842.413397	-0.18416	-7.7753E-05	0.082257	3.473E-05	-0.1019	-4.3023E-05	422.213963758429	39.419	0.76254	40.194	39.863	40.626	0.77451					31	14	3	0	0	0	0.7479	1	14464	14464		20.871	0	1	11546000	+		30246	15382	21798	21964	29571	29571					-0.014113539246523032
LGLHWKLLF	9	Unmodified	_LGLHWKLLF_					0	0	0		nc|ENSG00000130414|O95299-2|NDUFA10	nc|ENSG00000130414|O95299-2|NDUFA10	nc|ENSG00000130414|O95299-2|NDUFA10	MULTI-SECPEP	A375_MHC_IP_R2	2	376.9645690917969	3	376.230572	1125.66989	0.011189	4.2097E-06	1.1645	0.00043814	1.1757	0.00044235	376.5651117768402	28.128	0.40594	28.807	28.604	29.01	0.67857					23	7	4	0	0	0	0.73008	1	9711	9711		17.113	0	1	3349400			30247	14598	21799	21965	29572	29572					0.11207793370272157
LGLICDGC	8	Unmodified	_LGLICDGC_					0	0	0		ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	MSMS	A375_MHC_IP_R1	1	397.1691589355469	2	397.182774	792.350996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.97	1	147.97	147.47	148.47	0								0	0	0	0.16876	1	56518	56518		0.79363	0.79363	1				30248	9059	21800	21966	29573	29573					-0.05348539588862877
LGLKGPLPD	9	Unmodified	_LGLKGPLPD_					0	0	0			REV__ENSG00000166860|ENST00000300101|ZBTB39	REV__ENSG00000166860|ENST00000300101|ZBTB39	MULTI-MSMS	A375_MHC_IP_R2	2	455.67340087890625	2	455.273835	908.533118	-0.51636	-0.00023508	0.15688	7.1425E-05	-0.35947	-0.00016366	455.27375410370905	58.343	0.45881	59.092	58.879	59.338	0.74894					15	8	2	0	0	0	0.38603	1	22111	22111		25.399	3.6527	1	1611000	+		30249	20711	21801	21967	29574	29574					0.07519259419893842
LGLKRKSPP	9	Unmodified	_LGLKRKSPP_					0	0	0		SUGP1|p.P332L|1|0.08|ENSG00000105705|chr19:19297237-19297237|G/A|missense_variant	SUGP1|p.P332L|1|0.08|ENSG00000105705|chr19:19297237-19297237|G/A|missense_variant	SUGP1|p.P332L|1|0.08|ENSG00000105705|chr19:19297237-19297237|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	497.67156982421875	2	498.321651	994.62875	-0.45793	-0.0002282	-0.14873	-7.4116E-05	-0.60667	-0.00030231	498.321503603886	58.811	0.35532	58.811	58.531	58.887	0					10	6	2	0	0	0	0.78348	1	21138	21138		7.9102	0	1	1049800			30250	29267	21802	21968	29575	29575					0.13122032330807087
LGLKSVGPP	9	Unmodified	_LGLKSVGPP_					0	0	0			REV__nc|ENSG00000173638|P41440-2|SLC19A1	REV__nc|ENSG00000173638|P41440-2|SLC19A1	MULTI-MSMS	A375_MHC_IP_R1	1	434.66851806640625	2	434.268553	866.522553	-0.0021376	-9.2828E-07	0.03511	1.5247E-05	0.032972	1.4319E-05	434.26849580046235	51.69	0.4561	51.69	51.373	51.829	0					15	8	2	0	0	0	0.51106	1	18379	18379		19.257	1.122	1	1925800	+		30251	21236	21803	21969	29576	29576					0.08395276765475046
LGLKSVGPP	9	Unmodified	_LGLKSVGPP_					0	0	0			REV__nc|ENSG00000173638|P41440-2|SLC19A1	REV__nc|ENSG00000173638|P41440-2|SLC19A1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	434.268553	866.522553	-0.0021376	-9.2828E-07	0.03511	1.5247E-05	0.032972	1.4319E-05	434.26849580046235	51.69	0.4561	51.69	51.373	51.829	0	0.075777	4.6158E-05	NaN	19.257	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1925800	+		30252	21236	21803	21969							0.08395276765475046
LGLLEKTSL	9	Unmodified	_LGLLEKTSL_					0	0	0			REV__nc|ENSG00000083223|Q5VYS8-6|TUT7	REV__nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-SECPEP	A375_MHC_IP_R1	1	486.6850891113281	2	487.30005	972.585547	-0.40808	-0.00019886	0.32353	0.00015766	-0.084552	-4.1202E-05	487.2999540984073	46.787	0.35586	46.787	46.596	46.952	0					10	6	2	0	0	0	0.74651	1	16451	16451		4.756	0	1	1428800	+		30253	16801	21804	21970	29577	29577					0.09815797762871625
LGLLGDEHW	9	Unmodified	_LGLLGDEHW_					0	0	0		nc|ENSG00000137843|Q9NQU5-2|PAK6;ENSG00000137843|ENST00000560346|PAK6	nc|ENSG00000137843|Q9NQU5-2|PAK6	nc|ENSG00000137843|Q9NQU5-2|PAK6	MULTI-MSMS	A375_MHC_IP_R1	1	520.229248046875	2	520.263999	1038.51345	-0.71875	-0.00037394	-0.54809	-0.00028515	-1.2668	-0.00065909	520.2636355593496	85.626	0.6095	85.626	85.362	85.971	0					19	11	2	0	0	0	0.6898	1	31457	31457		7.9102	0.62092	1	1659600			30254	4928	21805	21971	29578	29578					-0.0042711659086762666
LGLLIYKWWKR	11	Unmodified	_LGLLIYKWWKR_					0	0	0			REV__nc|ENSG00000110660|Q8IXU6-3|SLC35F2	REV__nc|ENSG00000110660|Q8IXU6-3|SLC35F2	MULTI-MSMS	A375_MHC_IP_R1	1	493.0342712402344	3	492.634368	1474.88128	-0.58574	-0.00028855	0.43319	0.0002134	-0.15255	-7.5152E-05	492.634584920462	132.6	1.1171	132.6	132.03	133.15	0					76	21	5	0	0	0	0.73886	1	51020	51020		0.45452	0.046251	1	25602000	+		30255	17634	21806	21972	29579	29579					0.1628304534133349
LGLLRLRPVFS	11	Unmodified	_LGLLRLRPVFS_					0	0	0		ENST00000563885.5_1_16:67862648-67864187:-|nuORF;ENST00000436104.6_1_16:67862410-67864187:-|nuORF;ENST00000568495.5_1_16:67862172-67864127:-|nuORF;ENST00000569862.5_1_16:67862172-67864187:-|nuORF	ENST00000563885.5_1_16:67862648-67864187:-|nuORF	ENST00000563885.5_1_16:67862648-67864187:-|nuORF	MSMS	A375_MHC_IP_R2	2	635.93359375	2	635.90334	1269.79213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.888	1	85.624	85.124	86.124	0.73601								0	0	0	0.1624	1	32271	32271		6.2058	2.6093	1				30256	11923	21807	21973	29580	29580					0.1680221038182026
LGLPEVHVN	9	Unmodified	_LGLPEVHVN_					0	0	0			REV__tr|U7SUL7|U7SUL7_FUSNUD-methioninetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01219PE=3SV=1	REV__tr|U7SUL7|U7SUL7_FUSNUD-methioninetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01219PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	489.64306640625	2	489.274367	976.53418	-0.22688	-0.00011101	0.04364	2.1352E-05	-0.18324	-8.9656E-05	489.2744609606525	54.606	0.4575	54.606	54.467	54.924	0					11	8	2	0	0	0	0.4261	1	19550	19550		37.974	7.3375	1	1815400	+		30257	28566	21808	21974	29581	29581					0.04497473788808293
LGLPGFSEL	9	Unmodified	_LGLPGFSEL_					0	0	0			REV__ENSG00000171714|ENST00000324559|ANO5	REV__ENSG00000171714|ENST00000324559|ANO5	MSMS	A375_MHC_IP_R2	2	467.1571350097656	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.68	1	127.94	127.44	128.44	0.26593								0	0	0	0.027545	1	50105	50105		70.716	0	1		+		30258	21089	21809	21975	29582	29582					0.032992666659424685
LGLPLHARL	9	Unmodified	_LGLPLHARL_					0	0	0			REV__ENST00000468318.5_1_1:224544592-224544709:+|nuORF	REV__ENST00000468318.5_1_1:224544592-224544709:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	495.1509094238281	2	495.316369	988.618185	-0.54559	-0.00027024	0.27388	0.00013566	-0.27171	-0.00013458	495.3164528728651	66.097	0.40562	66.097	65.921	66.326	0					12	7	2	0	0	0	0.43707	1	23964	23964		21.747	9.2151	1	1240900	+		30259	23944	21810	21976	29583	29583					0.12342049676362876
LGLPNQLLG	9	Unmodified	_LGLPNQLLG_					0	0	0		nc|ENSG00000156313|Q92834-4|RPGR;nc|ENSG00000156313|Q92834-2|RPGR;nc|ENSG00000156313|Q92834|RPGR;nc|ENSG00000156313|Q92834-3|RPGR;ENSG00000156313|ENST00000645032|RPGR;nc|ENSG00000156313|Q92834-5|RPGR	nc|ENSG00000156313|Q92834-4|RPGR	nc|ENSG00000156313|Q92834-4|RPGR	MULTI-SECPEP	A375_MHC_IP_R1	1	463.1794738769531	2	462.779285	923.544017	0.23884	0.00011053	0.74279	0.00034375	0.98163	0.00045428	462.7795859434125	114.59	0.65887	114.59	114.31	114.97	0					19	12	2	0	0	0	0.043556	1	42012	42012		77.984	0	1	3616600			30260	14697	21811	21977	29584	29584					0.07918661794201398
LGLPNQLLG	9	Unmodified	_LGLPNQLLG_					0	0	0		nc|ENSG00000156313|Q92834-4|RPGR;nc|ENSG00000156313|Q92834-2|RPGR;nc|ENSG00000156313|Q92834|RPGR;nc|ENSG00000156313|Q92834-3|RPGR;ENSG00000156313|ENST00000645032|RPGR;nc|ENSG00000156313|Q92834-5|RPGR	nc|ENSG00000156313|Q92834-4|RPGR	nc|ENSG00000156313|Q92834-4|RPGR	MULTI-SECPEP	A375_MHC_IP_R2	2	463.178955078125	2	462.779285	923.544017	-0.31707	-0.00014673	0.12853	5.948E-05	-0.18854	-8.7253E-05	462.7792565858543	113.68	0.604	114.39	114.13	114.73	0.70985					20	11	2	0	0	0	0.061132	1	42883	42883		77.984	0	1	4245300			30261	14697	21811	21977	29585	29585					0.07918661794201398
LGLQGGIPNGY	11	Unmodified	_LGLQGGIPNGY_					0	0	0		nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN	nc|ENSG00000102854|Q13421-4|MSLN	nc|ENSG00000102854|Q13421-4|MSLN	MULTI-SECPEP	A375_MHC_IP_R1	1	544.6881103515625	2	544.790381	1087.56621	-0.16369	-8.9177E-05	0.11733	6.3922E-05	-0.046357	-2.5255E-05	545.2920616703275	69.239	0.65968	69.239	68.92	69.579	0					19	12	2	0	0	0	0.98748	1	25085	25085		13.042	11.39	1	1311000			30262	2397	21812	21978	29586	29586					0.025928414719601278
LGLQSLTAV	9	Unmodified	_LGLQSLTAV_					0	0	0			REV__nc|ENSG00000167711|P08697-2|SERPINF2	REV__nc|ENSG00000167711|P08697-2|SERPINF2	MSMS	A375_MHC_IP_R2	2	451.1792297363281	2	451.271293	900.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.038	1	49.795	49.295	50.295	0.75737								0	0	0	0.14677	1	18421	18421		26.884	5.137	1		+	+	30263	15863	21813	21979	29587	29587					0.07378955557271638
LGLRHSPR	8	Unmodified	_LGLRHSPR_					0	0	0			REV__ENST00000572518.1_1_16:4458221-4462552:-|nuORF	REV__ENST00000572518.1_1_16:4458221-4462552:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	468.6802673339844	2	468.280318	934.546083	-0.61555	-0.00028825	0.50361	0.00023583	-0.11194	-5.242E-05	468.2803939006804	131.07	0.30386	131.28	131.16	131.46	0.2142					11	5	3	0	0	0	0.38921	1	51566	51566		53.576	53.576	1	11301000	+		30264	26286	21814	21980	29588	29588					0.07619135322659076
LGLRHSPR	8	Unmodified	_LGLRHSPR_					0	0	0			REV__ENST00000572518.1_1_16:4458221-4462552:-|nuORF	REV__ENST00000572518.1_1_16:4458221-4462552:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	468.280318	934.546083	-0.53988	-0.00025282	0.56354	0.0002639	0.023661	1.108E-05	468.28053259654814	131.3	0.50421	131.3	131.18	131.68	0	0.0084162	1.6571E-05	NaN	53.576	14	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16597000	+		30265	26286	21814	21980							0.07619135322659076
LGLRHSPR	8	Unmodified	_LGLRHSPR_					0	0	0			REV__ENST00000572518.1_1_16:4458221-4462552:-|nuORF	REV__ENST00000572518.1_1_16:4458221-4462552:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	468.280318	934.546083	-0.61555	-0.00028825	0.50361	0.00023583	-0.11194	-5.242E-05	468.2803939006804	131.07	0.30386	131.28	131.16	131.46	0.2142	-0.0084162	-3.9558E-05	NaN	53.576	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11301000	+		30266	26286	21814	21980							0.07619135322659076
LGLSALAPPS	10	Unmodified	_LGLSALAPPS_					0	0	0		ENSG00000149564|ENST00000278927|ESAM	ENSG00000149564|ENST00000278927|ESAM	ENSG00000149564|ENST00000278927|ESAM	MSMS	A375_MHC_IP_R2	2	463.6333312988281	2	463.271293	924.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.082	1	57.832	57.332	58.332	0.75015								0	0	0	0.15332	1	21582	21582		10.074	0	1				30267	5815	21815	21981	29589	29589					0.06274955557285011
LGLSCLCAI	9	Carbamidomethyl (C)	_LGLSC(Carbamidomethyl (C))LCAI_	LGLSC(0.816)LC(0.184)AI		LGLSC(6.5)LC(-6.5)AI		0	1	0			REV__ATP7B|p.P984L|1|0.11|ENSG00000123191|chr13:51946393-51946393|G/A|missense_variant	REV__ATP7B|p.P984L|1|0.11|ENSG00000123191|chr13:51946393-51946393|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	475.1794128417969	2	475.245906	948.477259	-0.50922	-0.00024201	0.12655	6.0142E-05	-0.38267	-0.00018186	475.24589004774555	64.672	0.40697	65.413	65.208	65.615	0.74022					16	7	3	0	0	0	0.1209	1	24524	24524		46.921	6.9635	2	1407800	+		30268	15481	21816	21982	29590	29590	69				0.0009596691643309896
LGLSDHEID	9	Unmodified	_LGLSDHEID_					0	0	0		nc|ENSG00000067182|P19438-3|TNFRSF1A;ENST00000536717.5_1_12:6438480-6440154:-|nuORF;nc|ENSG00000067182|P19438-2|TNFRSF1A;ENSG00000067182|ENST00000162749|TNFRSF1A	nc|ENSG00000067182|P19438-3|TNFRSF1A	nc|ENSG00000067182|P19438-3|TNFRSF1A	MSMS	A375_MHC_IP_R2	2	499.7416076660156	2	499.743096	997.47164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.73	1	128.97	128.47	129.47	0.23946								0	0	0	0.15486	1	50573	50573		13.508	0	1				30269	1430	21817	21983	29591	29591					-0.027197170700446804
LGLSDPTPP	9	Unmodified	_LGLSDPTPP_					0	0	0		nc|ENSG00000100083|Q9UJY5-4|GGA1;nc|ENSG00000100083|Q9UJY5-3|GGA1;ENSG00000100083|ENST00000343632|GGA1;nc|ENSG00000100083|Q9UJY5-6|GGA1;nc|ENSG00000100083|Q9UJY5-2|GGA1	nc|ENSG00000100083|Q9UJY5-4|GGA1	nc|ENSG00000100083|Q9UJY5-4|GGA1	MULTI-SECPEP	A375_MHC_IP_R2	2	448.6257019042969	2	448.739825	895.465098	-0.1687	-7.5703E-05	-0.38188	-0.00017137	-0.55059	-0.00024707	448.739574033109	43.382	0.455	44.155	44.028	44.483	0.7724					10	8	2	0	0	0	0.75466	1	16284	16284		7.9102	0.62092	1	1412000			30270	2112	21818	21984	29592	29592					0.01318389769244277
LGLSSGSNLS	10	Unmodified	_LGLSSGSNLS_					0	0	0			REV__ENST00000489076.1_1_1:154227743-154229994:+|nuORF	REV__ENST00000489076.1_1_1:154227743-154229994:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	468.1452941894531	2	467.745639	933.476725	-0.66583	-0.00031144	-0.82832	-0.00038745	-1.4942	-0.00069888	467.7454060682045	127.65	0.25343	127.91	127.77	128.02	0.26592					9	4	3	0	0	0	0.33265	1	50111	50111		38.176	2.0485	1	6657200	+		30271	19369	21819	21985	29593	29593					0.007325867925828788
LGLTHSASEV	10	Unmodified	_LGLTHSASEV_					0	0	0			REV__ENST00000446923.6_1_10:31815659-31815755:+|nuORF	REV__ENST00000446923.6_1_10:31815659-31815755:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	507.241943359375	2	507.266739	1012.51892	-0.32504	-0.00016488	2.8767	0.0014592	2.5516	0.0012944	507.26790723144	89.216	0.86418	89.216	88.764	89.628	0					25	16	2	0	0	0	0.43117	1	32650	32650		32.305	2.0807	1	1007500	+		30272	24862	21820	21986	29594	29594					0.013165622009637445
LGLTKEESL	9	Unmodified	_LGLTKEESL_					0	0	0		ENSG00000171456|ENST00000375687|ASXL1;nc|ENSG00000171456|Q8IXJ9-2|ASXL1	ENSG00000171456|ENST00000375687|ASXL1	ENSG00000171456|ENST00000375687|ASXL1	MSMS	A375_MHC_IP_R2	2	495.2001037597656	2	495.279315	988.544076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.815	1	94.56	94.06	95.06	0.74474								0	0	0	0.14359	1	35660	35660		28.487	2.1456	1				30273	7602	21821	21987	29595	29595					0.04934617003527819
LGLVGGGVIVV	11	Unmodified	_LGLVGGGVIVV_					0	0	0			REV__ENST00000529802.1_1_11:126139101-126141609:+|nuORF	REV__ENST00000529802.1_1_11:126139101-126141609:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	492.477294921875	2	491.81841	981.622267	-0.49094	-0.00024145	0.3031	0.00014907	-0.18784	-9.2382E-05	491.81848286918836	36.414	0.20258	36.414	36.236	36.439	0					5	3	2	0	0	0	0.97871	1	12172	12172		15.847	0	1	650870	+		30274	17613	21822	21988	29596	29596					0.1307209437942447
LGLWWCTV	8	Unmodified	_LGLWWCTV_					0	0	0			REV__ENSG00000136859|ENST00000373425|ANGPTL2	REV__ENSG00000136859|ENST00000373425|ANGPTL2	MULTI-SECPEP	A375_MHC_IP_R2	2	489.6866149902344	2	489.249306	976.484059	-0.4526	-0.00022144	0.665	0.00032535	0.2124	0.00010391	489.24962005003255	79.254	0.50592	79.999	79.693	80.199	0.74474					11	9	2	0	0	0	0.93416	1	30050	30050		9.3474	0	1	544950	+		30275	18964	21823	21989	29597	29597					-0.005123521407085718
LGLYEQLAR	9	Unmodified	_LGLYEQLAR_					0	0	0			REV__ENSG00000167208|ENST00000330943|SNX20	REV__ENSG00000167208|ENST00000330943|SNX20	MULTI-SECPEP	A375_MHC_IP_R2	2	354.9222717285156	3	354.869591	1061.58694	-0.33142	-0.00011761	-0.55971	-0.00019862	-0.89113	-0.00031623	354.869524462445	50.784	0.25339	51.538	51.311	51.564	0.75406					8	4	2	0	0	0	0.75466	1	19052	19052		2.4985	0	1	664030	+		30276	20741	21824	21990	29598	29598					0.058614318515992636
LGMCCPETV	9	Unmodified	_LGMCCPETV_					0	0	0		ENST00000473202.1_1_2:224847274-224847337:-|nuORF	ENST00000473202.1_1_2:224847274-224847337:-|nuORF	ENST00000473202.1_1_2:224847274-224847337:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	477.1010437011719	2	476.700474	951.386395	-0.48545	-0.00023142	0.0033349	1.5897E-06	-0.48212	-0.00022983	476.7013064412373	57.398	0.81505	57.398	56.956	57.771	0					30	15	3	0	0	0	0.63811	1	20591	20591		12.532	3.9383	1	4235300			30277	12383	21825	21991	29599	29599					-0.09124245123359742
LGMIRMRV	8	Unmodified	_LGMIRMRV_					0	0	0			REV__ENSG00000180638|ENST00000433844|SLC47A2	REV__ENSG00000180638|ENST00000433844|SLC47A2	MULTI-MSMS	A375_MHC_IP_R1	1	488.6971740722656	2	488.283157	974.551762	-0.10754	-5.251E-05	0.56224	0.00027453	0.45469	0.00022202	488.2836516105692	106.45	1.7846	106.45	105.25	107.03	0					44	34	2	0	0	0	0.77686	1	38949	38949		6.3541	0.59368	1	1175600	+		30278	21619	21826	21992	29600	29600					0.06346774518453913
LGMLAEDSL	9	Unmodified	_LGMLAEDSL_					0	0	0			REV__ENSG00000185022|ENST00000338483|MAFF	REV__ENSG00000185022|ENST00000338483|MAFF	MULTI-MSMS	A375_MHC_IP_R2	2	475.1396789550781	2	474.738968	947.463383	-0.58328	-0.00027691	1.3573	0.00064436	0.77401	0.00036745	474.73965883791345	127.63	0.25343	127.89	127.77	128.02	0.26593					7	4	2	0	0	0	0.1478	1	50108	50108		42.095	0	1	6506700	+		30279	21861	21827	21993	29601	29601					-0.012449873110199405
LGMLAEDSL	9	Unmodified	_LGMLAEDSL_					0	0	0			REV__ENSG00000185022|ENST00000338483|MAFF	REV__ENSG00000185022|ENST00000338483|MAFF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	474.738968	947.463383	-0.26468	-0.00012566	-0.46734	-0.00022186	-0.73202	-0.00034752	474.7387943761759	127.95	0.354	127.95	127.77	128.13	0	0.02817	-0.00080106	NaN	42.095	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16427000	+		30280	21861	21827	21993							-0.012449873110199405
LGMLAEDSL	9	Unmodified	_LGMLAEDSL_					0	0	0			REV__ENSG00000185022|ENST00000338483|MAFF	REV__ENSG00000185022|ENST00000338483|MAFF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	474.738968	947.463383	-0.58328	-0.00027691	1.3573	0.00064436	0.77401	0.00036745	474.73965883791345	127.63	0.25343	127.89	127.77	128.02	0.26593	-0.02817	0.00093139	NaN	42.095	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6506700	+		30281	21861	21827	21993							-0.012449873110199405
LGMWFPFSSY	10	Unmodified	_LGMWFPFSSY_					0	0	0			REV__ENST00000536989.1_1_12:10312481-10313100:-|nuORF	REV__ENST00000536989.1_1_12:10312481-10313100:-|nuORF	MSMS	A375_MHC_IP_R1	1	617.73828125	2	617.78371	1233.55287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.917	1	99.917	99.417	100.42	0								0	0	0	0.15283	1	36714	36714		11.64	0.81637	1		+		30282	21217	21828	21994	29602	29602					-0.05456732631637351
LGNETKLGFD	10	Unmodified	_LGNETKLGFD_					0	0	0		ENST00000462720.6_1_2:45927699-45927756:+|nuORF	ENST00000462720.6_1_2:45927699-45927756:+|nuORF	ENST00000462720.6_1_2:45927699-45927756:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6450805664062	2	547.279846	1092.54514	-0.38189	-0.000209	-0.14307	-7.8297E-05	-0.52495	-0.0002873	547.2799181497985	71.338	0.35773	71.338	71.108	71.465	0					12	6	2	0	0	0	0.51493	1	25897	25897		31.268	6.2774	1	2690900			30283	12204	21829	21995	29603	29603					0.002568313724395921
LGNEYVSPV	9	Unmodified	_LGNEYVSPV_					0	0	0			REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MSMS	A375_MHC_IP_R1	1	489.1639709472656	2	489.250557	976.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.397	1	42.397	41.897	42.897	0								0	0	0	0.15411	1	14693	14693		14.838	3.198	1		+		30284	19998	21830	21996	29604	29604					-0.00262225202038735
LGNIDAEVSL	10	Unmodified	_LGNIDAEVSL_					0	0	0			REV__ENST00000493253.5_1_17:39778327-39780527:-|nuORF	REV__ENST00000493253.5_1_17:39778327-39780527:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	516.1744995117188	2	515.774396	1029.53424	-0.58713	-0.00030283	1.3675	0.00070532	0.78037	0.0004025	516.2768242427608	25.486	0.25537	25.486	25.306	25.562	0					7	4	2	0	0	0	0.47255	1	7463	7463		29.841	3.5724	1	5568000	+	+	30285	15862	21831	21997	29605	29605					0.02065428998139396
LGNLNEKTV	9	Unmodified	_LGNLNEKTV_					0	0	0			REV__tr|U7SHD7|U7SHD7_FUSNUPF03932familyproteinCutCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cutCPE=3SV=1	REV__tr|U7SHD7|U7SHD7_FUSNUPF03932familyproteinCutCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cutCPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	494.6775207519531	2	494.277106	986.53966	-0.28235	-0.00013956	-0.38763	-0.0001916	-0.66998	-0.00033116	494.2766101185352	40.62	0.55519	40.62	40.458	41.013	0					15	10	2	0	0	0	0.2487	1	14014	14014		34.402	2.0962	1	2053900	+		30286	28209	21832	21998	29606	29606					0.04585152580625618
LGNLNEKTV	9	Unmodified	_LGNLNEKTV_					0	0	0			REV__tr|U7SHD7|U7SHD7_FUSNUPF03932familyproteinCutCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cutCPE=3SV=1	REV__tr|U7SHD7|U7SHD7_FUSNUPF03932familyproteinCutCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cutCPE=3SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	494.277106	986.53966	-0.53167	-0.00026279	-0.36536	-0.00018059	-0.89704	-0.00044338	494.2768366005352	39.764	0.40633	40.538	40.422	40.828	0.77451	-0.040646	5.365E-06	NaN	34.402	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2220700	+		30287	28209	21832	21998							0.04585152580625618
LGNPFVTPN	9	Unmodified	_LGNPFVTPN_					0	0	0		AUTS2|p.S768F|1|0.36|ENSG00000158321|chr7:70786033-70786033|C/T|missense_variant	AUTS2|p.S768F|1|0.36|ENSG00000158321|chr7:70786033-70786033|C/T|missense_variant	AUTS2|p.S768F|1|0.36|ENSG00000158321|chr7:70786033-70786033|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	479.67156982421875	2	479.753267	957.491981	-0.054941	-2.6358E-05	0.78643	0.00037729	0.73148	0.00035093	479.7536461361896	44.543	1.0205	44.543	44.01	45.03	0					35	19	3	0	0	0	0.29981	1	15428	15428		30.637	0.41173	1	3698400			30288	218	21833	21999	29607	29607					0.011534983804153853
LGNRRLYG	8	Unmodified	_LGNRRLYG_					0	0	0			REV__LRGUK|p.K547N|1|0.34|ENSG00000155530|chr7:134199315-134199315|A/T|missense_variant	REV__LRGUK|p.K547N|1|0.34|ENSG00000155530|chr7:134199315-134199315|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	475.1239929199219	2	474.772326	947.530098	-0.49595	-0.00023546	0.5901	0.00028016	0.094149	4.4699E-05	474.7725178117527	96.18	1.0143	96.18	95.515	96.529	0					28	19	2	0	0	0	0.972	1	35323	35323		11.114	11.114	1	976510	+		30289	26943	21834	22000	29608	29608					0.05423429085760745
LGNRRLYG	8	Unmodified	_LGNRRLYG_					0	0	0			REV__LRGUK|p.K547N|1|0.34|ENSG00000155530|chr7:134199315-134199315|A/T|missense_variant	REV__LRGUK|p.K547N|1|0.34|ENSG00000155530|chr7:134199315-134199315|A/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	474.772326	947.530098	-0.343	-0.00016285	0.41517	0.00019711	0.072165	3.4262E-05	474.77242779867913	95.443	1.0684	96.193	95.533	96.602	0.75044	0.0065312	-9.4059E-05	NaN	11.114	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	622750	+		30290	26943	21834	22000							0.05423429085760745
LGNVDAEVSQH	11	Unmodified	_LGNVDAEVSQH_					0	0	0			REV__ENSG00000204897|ENST00000312150|KRT25	REV__ENSG00000204897|ENST00000312150|KRT25	MULTI-SECPEP	A375_MHC_IP_R2	2	390.29718017578125	3	390.191282	1167.55202	-0.10693	-4.1725E-05	1.3136	0.00051254	1.2066	0.00047081	390.1917866926205	44.241	0.35523	45.01	44.883	45.239	0.7691					9	6	2	0	0	0	0.99732	1	16475	16475		4.1166	0	1	1368200	+	+	30291	15895	21835	22001	29609	29609					-0.025058557469947118
LGNVWFLAL	9	Unmodified	_LGNVWFLAL_					0	0	0		SLC33A1|p.L231W|1|0.16|ENSG00000169359|chr3:155853306-155853306|A/C|missense_variant	SLC33A1|p.L231W|1|0.16|ENSG00000169359|chr3:155853306-155853306|A/C|missense_variant	SLC33A1|p.L231W|1|0.16|ENSG00000169359|chr3:155853306-155853306|A/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1823120117188	2	516.797478	1031.5804	-0.68584	-0.00035444	-1.7069	-0.00088211	-2.3927	-0.0012366	517.2991527477158	83.976	0.46318	84.716	84.508	84.971	0.73962					14	8	2	0	0	0	0.67221	1	31926	31926		13.508	3.434	1	1231300			30292	29182	21836	22002	29610	29610					0.06587538690882866
LGPAGRKLKL	10	Unmodified	_LGPAGRKLKL_					0	0	0		DCAF12L2|p.P395L|1|0.36|ENSG00000198354|chrX:126164741-126164741|G/A|missense_variant	DCAF12L2|p.P395L|1|0.36|ENSG00000198354|chrX:126164741-126164741|G/A|missense_variant	DCAF12L2|p.P395L|1|0.36|ENSG00000198354|chrX:126164741-126164741|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	351.96942138671875	3	351.569476	1051.6866	-0.11171	-3.9274E-05	0.047512	1.6704E-05	-0.064198	-2.257E-05	351.56947150008926	31.349	0.81199	31.349	31.109	31.921	0					36	15	3	0	0	0	0.43567	1	10046	10046		32.037	0.76914	1	5247000			30293	713	21837	22003	29611	29611					0.1628229425621157
LGPAPARVP	9	Unmodified	_LGPAPARVP_					0	0	0			REV__ENST00000293604.10_1_6:30615511-30615604:+|nuORF	REV__ENST00000293604.10_1_6:30615511-30615604:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	440.65032958984375	2	439.266345	876.518136	-0.58259	-0.00025591	0.13813	6.0677E-05	-0.44446	-0.00019524	439.2663910014294	38.45	4.2765	39.224	37.618	41.895	0.77451					273	83	4	0	0	0	0.3054	1	13805	13805		30.225	1.738	1	186450000	+		30294	23372	21838	22004	29612	29612					0.07493812342556794
LGPFFLSYFF	10	Unmodified	_LGPFFLSYFF_					0	0	0			REV__ENSG00000253710|ENST00000521508|ALG11	REV__ENSG00000253710|ENST00000521508|ALG11	MSMS	A375_MHC_IP_R1	1	619.360107421875	2	619.318243	1236.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.731	1	96.731	96.231	97.231	0								0	0	0	0.15256	1	35546	35546		12.532	3.7861	1		+		30295	22857	21839	22005	29613	29613					0.013086746595490695
LGPGPLRGL	9	Unmodified	_LGPGPLRGL_					0	0	0		ENST00000309422.6_2_11:64005852-64006020:+|nuORF	ENST00000309422.6_2_11:64005852-64006020:+|nuORF	ENST00000309422.6_2_11:64005852-64006020:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	440.67431640625	2	440.27417	878.533787	-0.29446	-0.00012965	0.24024	0.00010577	-0.05422	-2.3871E-05	440.2743516750291	48.348	0.35289	49.105	48.929	49.282	0.75737					10	6	2	0	0	0	0.56939	1	18191	18191		19.439	1.304	1	1917900			30296	10610	21840	22006	29614	29614					0.08966098859605154
LGPGPLRGL	9	Unmodified	_LGPGPLRGL_					0	0	0		ENST00000309422.6_2_11:64005852-64006020:+|nuORF	ENST00000309422.6_2_11:64005852-64006020:+|nuORF	ENST00000309422.6_2_11:64005852-64006020:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	440.27417	878.533787	0.2705	0.00011909	-0.053848	-2.3708E-05	0.21665	9.5385E-05	440.27418092044985	49.498	0.40671	49.498	49.235	49.642	0	0.19625	-0.00010754	NaN	19.439	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1316300			30297	10610	21840	22006							0.08966098859605154
LGPGVPAAGVP	11	Unmodified	_LGPGVPAAGVP_					0	0	0		ENSG00000106351|ENST00000300176|AGFG2	ENSG00000106351|ENST00000300176|AGFG2	ENSG00000106351|ENST00000300176|AGFG2	MULTI-SECPEP	A375_MHC_IP_R2	2	467.6424865722656	2	467.77146	933.528367	-0.66306	-0.00031016	-0.20567	-9.6205E-05	-0.86872	-0.00040636	467.77107827199825	39.647	0.25373	40.421	40.219	40.473	0.77451					6	4	2	0	0	0	0.97871	1	14651	14651		3.5965	0	1	724150			30298	2685	21841	22007	29615	29615					0.058943752771256186
LGPHLLLSVL	10	Unmodified	_LGPHLLLSVL_					0	0	0			REV__ENST00000576995.1_1_17:79079883-79079931:+|nuORF	REV__ENST00000576995.1_1_17:79079883-79079931:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	354.9621276855469	3	354.562099	1060.66447	-0.023133	-8.2021E-06	0.23977	8.5015E-05	0.21664	7.6813E-05	354.56217304414093	61.698	0.45988	61.698	61.534	61.994	0					14	8	2	0	0	0	0.71118	1	22294	22294		3.8763	0.28927	1	1612500	+		30299	26315	21842	22008	29616	29616					0.13656069787793967
LGPIYFLDP	9	Unmodified	_LGPIYFLDP_					0	0	0		ODF3L2|p.P86L|1|0.18|ENSG00000181781|chr19:467741-467741|G/A|missense_variant	ODF3L2|p.P86L|1|0.18|ENSG00000181781|chr19:467741-467741|G/A|missense_variant	ODF3L2|p.P86L|1|0.18|ENSG00000181781|chr19:467741-467741|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	517.6683959960938	2	517.781493	1033.54843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.142	1	88.874	88.374	89.374	0.7318								0	0	0	0.1535	1	33538	33538		15.847	2.8047	1				30300	15045	21843	22009	29617	29617					0.033001262170728296
LGPKSRSLESP	11	Unmodified	_LGPKSRSLESP_					0	0	0		ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	MULTI-MSMS	A375_MHC_IP_R1	1	586.3553466796875	2	585.827495	1169.64044	-0.61478	-0.00036015	-4.3691	-0.0025596	-4.9839	-0.0029197	585.8256516425412	144.25	0.64354	144.25	143.84	144.48	0					18	15	2	0	0	0	0.73332	1	55202	55202		5.7319	0	1	935890			30301	5672	21844	22010	29618	29618					0.06240184563466755
LGPKSRSLESP	11	Unmodified	_LGPKSRSLESP_					0	0	0		ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	MULTI-MATCH	A375_MHC_IP_R2	2		2	585.827495	1169.64044	-0.33225	-0.00019464	-3.9619	-0.002321	-4.2941	-0.0025156	585.8254242690892	144.27	0.42514	144.3	144.04	144.46	0.024414	0.024245	3.3264E-05	NaN	5.7319	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1597200			30302	5672	21844	22010							0.06240184563466755
LGPKVLFSV	9	Unmodified	_LGPKVLFSV_					0	0	0			REV__ATXN7|p.S284F|1|0.14|ENSG00000163635|chr3:63982284-63982284|C/T|missense_variant	REV__ATXN7|p.S284F|1|0.14|ENSG00000163635|chr3:63982284-63982284|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	480.1526794433594	2	480.299853	958.585153	-0.96709	-0.00046449	0.3433	0.00016488	-0.62379	-0.00029961	480.29992760066904	59.349	0.25218	60.096	59.996	60.249	0.74714					6	4	2	0	0	0	0.75466	1	22507	22507		1.8442	0	1	590530	+		30303	15486	21845	22011	29619	29619					0.10420422833658449
LGPPPPLRV	9	Unmodified	_LGPPPPLRV_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2;ENST00000533421.2_1_11:65820160-65823021:+|nuORF;ENST00000531589.5_1_11:65819891-65822828:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	A375_MHC_IP_R1	1	473.3501281738281	2	473.297645	944.580737	-0.7392	-0.00034986	0.40363	0.00019104	-0.33557	-0.00015882	473.2977942363699	67.101	1.0214	67.101	66.632	67.654	0					44	19	3	0	0	0	0.35581	1	24316	24316		26.884	7.4447	1	9207700			30304	1871	21846	22012	29620	29620					0.10622958410738192
LGPPPPLRV	9	Unmodified	_LGPPPPLRV_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2;ENST00000533421.2_1_11:65820160-65823021:+|nuORF;ENST00000531589.5_1_11:65819891-65822828:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-SECPEP	A375_MHC_IP_R2	2	473.6971740722656	2	473.297645	944.580737	-0.73989	-0.00035019	0.44709	0.00021161	-0.2928	-0.00013858	473.29779155616296	66.213	0.96866	66.951	66.375	67.343	0.73811					40	18	3	0	0	0	0.24479	1	25005	25005		42.095	17.421	1	9046400			30305	1871	21846	22012	29621	29621					0.10622958410738192
LGPPRLAPG	9	Unmodified	_LGPPRLAPG_					0	0	0			REV__ENST00000297533.8_1_7:150778427-150778592:-|nuORF	REV__ENST00000297533.8_1_7:150778427-150778592:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	439.6663513183594	2	439.266345	876.518136	-0.058682	-2.5777E-05	0.093697	4.1158E-05	0.035014	1.5381E-05	439.26636073808237	38.86	5.133	38.86	37.556	42.689	0					293	100	5	0	0	0	0.3054	1	14264	14264		30.225	0	1	188910000	+		30306	23397	21847	22013	29622	29622					0.07493812342568162
LGPPRPQL	8	Unmodified	_LGPPRPQL_					0	0	0			REV__nc|ENSG00000197381|P78563-5|ADARB1	REV__nc|ENSG00000197381|P78563-5|ADARB1	MULTI-MSMS	A375_MHC_IP_R2	2	439.30267333984375	2	439.266345	876.518136	-0.58259	-0.00025591	0.13813	6.0677E-05	-0.44446	-0.00019524	439.2663910014294	38.45	4.2765	39.224	37.618	41.895	0.77451					273	83	4	0	0	0	0.32803	1	14351	14351		56.541	2.9657	1	186450000	+		30307	27441	21848	22014	29623	29623					0.07493812342568162
LGPPRPQL	8	Unmodified	_LGPPRPQL_					0	0	0			REV__nc|ENSG00000197381|P78563-5|ADARB1	REV__nc|ENSG00000197381|P78563-5|ADARB1	MULTI-SECPEP	A375_MHC_IP_R2	2	439.30267333984375	2	439.266345	876.518136	-0.58259	-0.00025591	0.13813	6.0677E-05	-0.44446	-0.00019524	439.2663910014294	38.45	4.2765	39.224	37.618	41.895	0.77451					273	83	4	0	0	0	0.38164	1	14351	14351		56.541	6.8724	1	186450000	+		30308	27441	21848	22014	29624	29624					0.07493812342568162
LGPQEDELLIL	11	Unmodified	_LGPQEDELLIL_					0	0	0			REV__nc|ENSG00000145536|Q8TE57-2|ADAMTS16	REV__nc|ENSG00000145536|Q8TE57-2|ADAMTS16	MULTI-MSMS	A375_MHC_IP_R2	2	414.2997131347656	3	413.899216	1238.67582	0.047738	1.9759E-05	1.3075	0.00054117	1.3552	0.00056093	413.89947541178117	44.329	0.60812	45.098	44.833	45.441	0.76909					24	11	3	0	0	0	0.61954	1	16542	16542		21.799	0	1	2577800	+		30309	19479	21849	22015	29625	29625					0.06602802300631083
LGPQVELPLY	10	Unmodified	_LGPQVELPLY_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	A375_MHC_IP_R1	1	377.28155517578125	3	376.881497	1127.62266	0.33779	0.00012731	-0.25934	-9.774E-05	0.078455	2.9568E-05	376.8813380633045	74.792	0.45671	74.792	74.553	75.009	0					13	8	2	0	0	0	0.70479	1	27267	27267		10.151	2.2052	1	1338900			30310	9048	21850	22016	29626	29626					0.06395469308608881
LGPQVELPLY	10	Unmodified	_LGPQVELPLY_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	376.881497	1127.62266	0.33779	0.00012731	-0.25934	-9.774E-05	0.078455	2.9568E-05	376.8813380633045	74.792	0.45671	74.792	74.553	75.009	0	0.13737	-0.00015937	NaN	10.151	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1338900			30311	9048	21850	22016							0.06395469308608881
LGPQVELPLY	10	Unmodified	_LGPQVELPLY_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	376.881497	1127.62266	0.22617	8.5239E-05	0.0037384	1.4089E-06	0.22991	8.6648E-05	376.88149018697464	73.782	0.6106	74.517	74.345	74.956	0.7354	-0.13737	0.00013808	NaN	10.151	19	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1429300			30312	9048	21850	22016							0.06395469308608881
LGPRLVLA	8	Unmodified	_LGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-SECPEP	A375_MHC_IP_R1	1	420.1790771484375	2	419.779088	837.543623	0.17506	7.3485E-05	0.45145	0.00018951	0.6265	0.00026299	419.77918892525247	70.871	0.66527	70.871	70.545	71.211	0					25	12	3	0	0	0	0.73563	1	25706	25706		36.044	5.8194	1	8010900			30313	7497	21851	22017	29627	29627					0.11835286864982208
LGPRLVLA	8	Unmodified	_LGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-SECPEP	A375_MHC_IP_R2	2	420.178955078125	2	419.779088	837.543623	-0.0085639	-3.5949E-06	0.2556	0.00010729	0.24703	0.0001037	419.7791241909108	69.82	0.66105	70.554	70.233	70.895	0.73421					27	12	3	0	0	0	0.73563	1	26421	26421		44.407	6.2558	1	6230300			30314	7497	21851	22017	29628	29628					0.11835286864982208
LGPRTPISAV	10	Unmodified	_LGPRTPISAV_					0	0	0		ENST00000373095.5_1_9:130716150-130742615:-|nuORF	ENST00000373095.5_1_9:130716150-130742615:-|nuORF	ENST00000373095.5_1_9:130716150-130742615:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	506.70648193359375	2	505.803291	1009.59203	-0.72422	-0.00036631	1.9914	0.0010072	1.2671	0.00064092	506.3066649618273	75.682	0.45953	76.423	76.181	76.64	0.74052					20	8	3	0	0	0	0.62155	1	28721	28721		19.257	1.1106	1	4374900			30315	11222	21852	22018	29629	29629					0.08761735714222141
LGPRVTIV	8	Unmodified	_LGPRVTIV_					0	0	0		ENSG00000215045|ENST00000457091|GRID2IP	ENSG00000215045|ENST00000457091|GRID2IP	ENSG00000215045|ENST00000457091|GRID2IP	MULTI-SECPEP	A375_MHC_IP_R2	2	428.17645263671875	2	427.776545	853.538538	-0.26983	-0.00011543	-0.14506	-6.2055E-05	-0.4149	-0.00017748	427.7764503448163	55.562	0.5581	56.312	56.084	56.642	0.75075					21	10	3	0	0	0	0.8824	1	20996	20996		30.225	1.738	1	5904500			30316	9638	21853	22019	29630	29630					0.10590983002384746
LGPSSNPF	8	Unmodified	_LGPSSNPF_					0	0	0			REV__nc|ENSG00000039068|P12830-2|CDH1	REV__nc|ENSG00000039068|P12830-2|CDH1	MSMS	A375_MHC_IP_R2	2	409.60504150390625	2	409.705786	817.397018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.71	1	133.87	133.37	134.37	0.16487								0	0	0	0.16876	1	52601	52601		7.9102	0	1		+		30317	16330	21854	22020	29631	29631					-0.018984350907658154
LGPSWGWSW	9	Unmodified	_LGPSWGWSW_					0	0	0			REV__nc|ENSG00000177595|Q9HB75-6|PIDD1	REV__nc|ENSG00000177595|Q9HB75-6|PIDD1	MULTI-SECPEP	A375_MHC_IP_R1	1	537.6661987304688	2	538.253434	1074.49232	-0.64189	-0.0003455	0.79192	0.00042625	0.15003	8.0756E-05	538.2538938599076	73.05	0.8627	73.05	72.676	73.539	0					28	16	2	0	0	0	0.77834	1	26499	26499		4.756	0	1	2354400	+		30318	25787	21855	22021	29632	29632					-0.04195081899729303
LGPTDRDV	8	Unmodified	_LGPTDRDV_					0	0	0			REV__ENSG00000196177|ENST00000358776|ACADSB	REV__ENSG00000196177|ENST00000358776|ACADSB	MSMS	A375_MHC_IP_R1	1	436.6533203125	2	436.727249	871.439946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.1	1	43.1	42.6	43.6	0								0	0	0	0.16876	1	14967	14967		16.942	2.104	1		+		30319	22167	21856	22022	29633	29633					-0.0009166503333517539
LGPWRGRL	8	Unmodified	_LGPWRGRL_					0	0	0			REV__ENST00000489526.1_1_10:102756981-102762342:+|nuORF	REV__ENST00000489526.1_1_10:102756981-102762342:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	478.2136535644531	2	477.785236	953.555919	-0.39354	-0.00018803	-1.1486	-0.00054878	-1.5421	-0.00073681	477.7848765239882	46.046	0.35539	46.046	45.789	46.144	0					10	6	2	0	0	0	0.64068	1	16104	16104		32.117	0	1	1159900	+		30320	24916	21857	22023	29634	29634					0.07728323328035458
LGQAQPLWT	9	Unmodified	_LGQAQPLWT_					0	0	0		ENST00000264192.7_1_2:158272517-158272613:-|nuORF	ENST00000264192.7_1_2:158272517-158272613:-|nuORF	ENST00000264192.7_1_2:158272517-158272613:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.1358337402344	2	507.274367	1012.53418	-0.30634	-0.0001554	0.064035	3.2483E-05	-0.2423	-0.00012291	507.2745104952028	96.837	0.55704	96.837	96.529	97.086	0					12	10	2	0	0	0	0.65246	1	35561	35561		21.747	2.4897	1	878570			30321	10332	21858	22024	29635	29635					0.028414737887942465
LGQAQPLWT	9	Unmodified	_LGQAQPLWT_					0	0	0		ENST00000264192.7_1_2:158272517-158272613:-|nuORF	ENST00000264192.7_1_2:158272517-158272613:-|nuORF	ENST00000264192.7_1_2:158272517-158272613:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	507.274367	1012.53418	-0.69812	-0.00035414	0.94522	0.00047948	0.2471	0.00012535	507.2747346807639	96.029	0.4569	96.78	96.5	96.957	0.75045	-0.028627	0.00016759	NaN	21.747	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	823180			30322	10332	21858	22024							0.028414737887942465
LGQARRCTWRR	11	Unmodified	_LGQARRCTWRR_					0	0	0		ENST00000314088.6_1_6:26124590-26124629:+|nuORF	ENST00000314088.6_1_6:26124590-26124629:+|nuORF	ENST00000314088.6_1_6:26124590-26124629:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	468.6689453125	3	468.258078	1401.7524	-0.77109	-0.00036107	0.011879	5.5626E-06	-0.75921	-0.00035551	468.2583401737431	40.668	0.30589	41.442	41.234	41.54	0.77451					8	5	2	0	0	0	0.7359	1	15046	15046		1.3296	0	1	703320			30323	10646	21859	22025	29636	29636					0.06759760159457073
LGQDETGAYL	10	Unmodified	_LGQDETGAYL_					0	0	0		ENST00000399702.5_1_16:2660819-2678872:+|nuORF	ENST00000399702.5_1_16:2660819-2678872:+|nuORF	ENST00000399702.5_1_16:2660819-2678872:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	533.7437744140625	2	533.756204	1065.49785	-0.74988	-0.00040025	-0.5283	-0.00028199	-1.2782	-0.00068224	533.7558611009872	77.917	0.66457	78.66	78.315	78.98	0.74294					20	12	2	0	0	0	0.70329	1	29457	29457		10.824	0.75	1	2324500			30324	11545	21860	22026	29637	29637					-0.032274478985755195
LGQEEEVEEE	10	Unmodified	_LGQEEEVEEE_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MSMS	A375_MHC_IP_R1	1	595.7444458007812	2	595.756598	1189.49864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.15	1	100.15	99.653	100.65	0								0	0	0	0.15372	1	36808	36808		8.7454	0.83525	1		+		30325	18931	21861	22027	29638	29638					-0.08852698040163887
LGQKIIRLLVK	11	Unmodified	_LGQKIIRLLVK_					0	0	0		HSD3B1|p.R18K|2|0.44|ENSG00000203857|chr1:119507529-119507529|G/A|missense_variant	HSD3B1|p.R18K|2|0.44|ENSG00000203857|chr1:119507529-119507529|G/A|missense_variant	HSD3B1|p.R18K|2|0.44|ENSG00000203857|chr1:119507529-119507529|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	640.990234375	2	640.942465	1279.87038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.147	1	85.883	85.383	86.383	0.73601								0	0	0	0.16353	1	32369	32369		0.35063	0	1				30326	14136	21862	22028	29639	29639					0.2416364296707343
LGQLVKLDPV	10	Unmodified	_LGQLVKLDPV_					0	0	0		ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	MULTI-SECPEP	A375_MHC_IP_R1	1	541.1112670898438	2	541.334424	1080.6543	-0.67864	-0.00036737	0.629	0.0003405	-0.049635	-2.6869E-05	541.3347578383616	68.676	0.4065	68.676	68.412	68.819	0					12	7	2	0	0	0	0.85226	1	24898	24898		6.2058	0	1	939090			30327	10039	21863	22029	29640	29640					0.11719462062546881
LGQPDALTL	9	Unmodified	_LGQPDALTL_					0	0	0			REV__ENST00000498057.1_1_3:48680363-48680537:-|nuORF	REV__ENST00000498057.1_1_3:48680363-48680537:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	928.513916015625	1	927.514573	926.507297	-0.20243	-0.00018776	-1.0959	-0.0010164	-1.2983	-0.0012042	927.5144138381006	92.218	0.60719	92.957	92.734	93.341	0.73902					36	11	4	0	0	0	0.57432	1	35177	35177		16.149	0.90062	1	12782000	+		30328	25476	21864	22030	29641	29641					0.04110365177609765
LGQPRSVL	8	Unmodified	_LGQPRSVL_					0	0	0		ENST00000531719.5_1_11:46894680-46894974:+|nuORF	ENST00000531719.5_1_11:46894680-46894974:+|nuORF	ENST00000531719.5_1_11:46894680-46894974:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	435.6632995605469	2	435.263802	868.513051	-0.15338	-6.6762E-05	-0.1385	-6.0286E-05	-0.29189	-0.00012705	435.26368286376913	63.812	0.66342	63.812	63.477	64.141	0					27	12	3	0	0	0	0.71451	1	23063	23063		30.225	0	1	5057700			30329	13177	21865	22031	29642	29642					0.07353508479945958
LGQQEPVVL	9	Unmodified	_LGQQEPVVL_					0	0	0		ENST00000569717.5_1_16:71512168-71512942:-|nuORF	ENST00000569717.5_1_16:71512168-71512942:-|nuORF	ENST00000569717.5_1_16:71512168-71512942:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	492.4775085449219	2	491.782025	981.549496	0.25563	0.00012571	-0.87241	-0.00042904	-0.61679	-0.00030332	491.7817057397869	44.841	0.50651	44.841	44.676	45.183	0					14	9	2	0	0	0	0.74651	1	15610	15610		13.508	2.3934	1	1722900			30330	13594	21866	22032	29643	29643					0.05798340585999995
LGQRGISTV	9	Unmodified	_LGQRGISTV_					0	0	0			REV__nc|ENSG00000179148|Q9BYJ1-2|ALOXE3	REV__nc|ENSG00000179148|Q9BYJ1-2|ALOXE3	MULTI-MSMS	A375_MHC_IP_R2	2	466.171630859375	2	465.771991	929.529429	-0.71003	-0.00033071	0.11616	5.4104E-05	-0.59387	-0.00027661	465.7720539612944	30.19	0.50732	30.908	30.809	31.317	0.71857					16	9	2	0	0	0	0.06083	1	10623	10623		60.074	2.3519	1	1764200	+		30331	27382	21867	22033	29644	29644					0.061845896460340555
LGQRRIPA	8	Unmodified	_LGQRRIPA_					0	0	0			REV__ENST00000566534.5_1_16:88712785-88713052:-|nuORF	REV__ENST00000566534.5_1_16:88712785-88713052:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	456.080078125	2	455.782693	909.550834	-0.22082	-0.00010065	-0.26678	-0.00012159	-0.4876	-0.00022224	455.78237819796107	41.767	0.358	42.541	42.401	42.759	0.77451					10	6	2	0	0	0	0.97144	1	15501	15501		5.2307	5.2307	1	1076600	+		30332	26242	21868	22034	29645	29645					0.09244019465404563
LGQSQNHYL	9	Unmodified	_LGQSQNHYL_					0	0	0			REV__ENSG00000110321|ENST00000339995|EIF4G2	REV__ENSG00000110321|ENST00000339995|EIF4G2	MULTI-MSMS	A375_MHC_IP_R1	1	530.1506958007812	2	530.26453	1058.51451	-0.98487	-0.00052224	0.23639	0.00012535	-0.74847	-0.00039689	530.2646443791142	29.663	0.44501	29.663	29.353	29.798	0					12	8	2	0	0	0	0.27715	1	9233	9233		32.305	1.0371	1	15035000	+		30333	17624	21869	22035	29646	29646					-0.012409022219571852
LGRAEDLHLL	10	Unmodified	_LGRAEDLHLL_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.R7429Ifs*19|1|0.07|ENSG00000131018|chr6:152214911-152214966|TCTTTCTGTAGTCTGAGAGGAGATCAGAGACCAATGGCGGTTCAGATTCTGCATTC/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-10|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	A375_MHC_IP_R2	2	569.224365234375	2	568.824755	1135.63496	-0.65839	-0.00037451	-0.14028	-7.9795E-05	-0.79867	-0.0004543	568.8246197543383	61.25	0.50432	61.995	61.718	62.223	0.74503					16	9	2	0	0	0	0.79457	1	23224	23224		20.415	0	1	2833700			30334	4300	21870	22036	29647	29647					0.07256505771670163
LGRAGAGG	8	Unmodified	_LGRAGAGG_					0	0	0			REV__ENSG00000162849|ENST00000407071|KIF26B	REV__ENSG00000162849|ENST00000407071|KIF26B	MULTI-SECPEP	A375_MHC_IP_R1	1	658.5432739257812	1	658.363099	657.355822	-0.46868	-0.00030856	2.3759	0.0015642	1.9072	0.0012556	658.3665750588427	100.39	0.30515	100.39	100.18	100.48	0					8	5	2	0	0	0	0.972	1	36860	36860		6.3541	0	1	1503800	+		30335	20311	21871	22037	29648	29648					0.013438486604286481
LGRASVGK	8	Unmodified	_LGRASVGK_					0	0	0			REV__ENSG00000167487|ENST00000300976|KLHL26	REV__ENSG00000167487|ENST00000300976|KLHL26	MSMS	A375_MHC_IP_R2	2	394.2764892578125	2	394.24287	786.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.19	1	56.94	56.44	57.44	0.75015								0	0	0	0.16876	1	21233	21233		9.3474	0	1		+		30336	20762	21872	22038	29649	29649					0.0694095279142175
LGREAVVWGR	10	Unmodified	_LGREAVVWGR_					0	0	0		ENST00000361981.7_1_X:153127328-153128099:-|nuORF	ENST00000361981.7_1_X:153127328-153128099:-|nuORF	ENST00000361981.7_1_X:153127328-153128099:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	382.6204528808594	3	381.552485	1141.63563	-0.31842	-0.00012149	0.09217	3.5168E-05	-0.22625	-8.6327E-05	381.5525234667063	28.217	0.76176	28.895	28.452	29.214	0.67857					43	14	5	0	0	0	0.56082	1	9646	9646		23.801	12.306	1	32801000			30337	11055	21873	22039	29650	29650					0.07047345211367428
LGREELLRL	9	Unmodified	_LGREELLRL_					0	0	0		ENST00000456404.5_1_20:30310076-30311747:-|nuORF	ENST00000456404.5_1_20:30310076-30311747:-|nuORF	ENST00000456404.5_1_20:30310076-30311747:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	550.23486328125	2	549.835123	1097.65569	-0.5571	-0.00030631	-0.30046	-0.0001652	-0.85756	-0.00047152	549.8351637565589	64.202	0.45534	64.202	63.887	64.343	0					12	8	2	0	0	0	0.71341	1	23260	23260		8.7454	0	1	1337800			30338	12134	21874	22040	29651	29651					0.1107709615132535
LGREELLRL	9	Unmodified	_LGREELLRL_					0	0	0		ENST00000456404.5_1_20:30310076-30311747:-|nuORF	ENST00000456404.5_1_20:30310076-30311747:-|nuORF	ENST00000456404.5_1_20:30310076-30311747:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	549.835123	1097.65569	-0.73625	-0.00040482	-0.35853	-0.00019713	-1.0948	-0.00060195	549.835147783259	63.155	0.40612	63.897	63.685	64.091	0.74263	-0.15237	-2.2538E-05	NaN	8.7454	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1376700			30339	12134	21874	22040							0.1107709615132535
LGREVDPRHWW	11	Unmodified	_LGREVDPRHWW_					0	0	0			REV__ENST00000270776.12_1_1:10477506-10477563:+|nuORF	REV__ENST00000270776.12_1_1:10477506-10477563:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	484.2134094238281	3	484.249465	1449.72657	-1.0255	-0.00049661	-2.8689	-0.0013893	-3.8944	-0.0018859	484.2477968992449	25.233	0.30773	25.876	25.668	25.976	0.64368					6	5	2	0	0	0	1.0004	1	8384	8384		2.6312	1.6177	1	1430600	+		30340	23272	21875	22041	29652	29652					0.019691891888442115
LGRFKDAPTLT	11	Unmodified	_LGRFKDAPTLT_					0	0	0		ENST00000369869.1_1_1:110032306-110035219:+|nuORF;ENST00000497545.5_1_1:110032306-110034363:+|nuORF	ENST00000369869.1_1_1:110032306-110035219:+|nuORF	ENST00000369869.1_1_1:110032306-110035219:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	407.2885437011719	3	406.89955	1217.67682	-0.49107	-0.00019982	-0.50374	-0.00020497	-0.99481	-0.00040479	406.89935421151137	32.554	0.75859	32.554	32.231	32.989	0					37	14	4	0	0	0	0.72515	1	10401	10401		13.519	1.8873	1	14074000			30341	11143	21876	22042	29653	29653					0.07669061460183002
LGRGGHSSPLG	11	Unmodified	_LGRGGHSSPLG_					0	0	0			REV__ENST00000405260.5_1_2:242082421-242089560:-|nuORF	REV__ENST00000405260.5_1_2:242082421-242089560:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	519.67578125	2	519.277972	1036.54139	-1.1168	-0.00057992	-0.46246	-0.00024014	-1.5792	-0.00082006	519.277783735352	56.785	0.6633	57.535	57.203	57.867	0.75015					28	12	3	0	0	0	0.78118	1	21436	21436		26.268	3.1197	1	10251000	+		30342	24432	21877	22043	29654	29654					0.024582063892239603
LGRGHDLSDA	10	Unmodified	_LGRGHDLSDA_					0	0	0		ENST00000575282.5_1_17:78185753-78186503:-|nuORF;ENST00000570923.1_1_17:78185753-78194107:-|nuORF	ENST00000575282.5_1_17:78185753-78186503:-|nuORF	ENST00000575282.5_1_17:78185753-78186503:-|nuORF	MSMS	A375_MHC_IP_R2	2	520.7329711914062	2	520.759612	1039.50467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.084	1	82.827	82.327	83.327	0.74293								0	0	0	0.15491	1	31179	31179		4.897	0.95262	1				30343	13605	21878	22044	29655	29655					-0.013500902273335669
LGRGPEGF	8	Unmodified	_LGRGPEGF_					0	0	0			REV__ENST00000469480.1_1_11:62344075-62344249:-|nuORF	REV__ENST00000469480.1_1_11:62344075-62344249:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	416.4306640625	2	416.719227	831.423902	0.062747	2.6148E-05	0.2416	0.00010068	0.30434	0.00012683	416.7193154400415	38.413	0.4099	38.413	38.218	38.628	0					13	7	2	0	0	0	0.93416	1	12988	12988		5.2307	0	1	1932600	+		30344	24998	21879	22045	29656	29656					0.0014467352043538995
LGRHLPAERV	10	Unmodified	_LGRHLPAERV_					0	0	0		ENSG00000134815|ENST00000328771|DHX34	ENSG00000134815|ENST00000328771|DHX34	ENSG00000134815|ENST00000328771|DHX34	MULTI-MSMS	A375_MHC_IP_R1	1	383.627685546875	3	383.228001	1146.66217	0.1718	6.5837E-05	-0.2385	-9.14E-05	-0.066704	-2.5563E-05	383.22780524445255	32.304	0.41016	32.304	31.973	32.383	0					15	7	3	0	0	0	0.33265	1	10425	10425		32.898	15.035	1	2773900			30345	4612	21880	22046	29657	29657					0.09471034102671183
LGRHLPAERV	10	Unmodified	_LGRHLPAERV_					0	0	0		ENSG00000134815|ENST00000328771|DHX34	ENSG00000134815|ENST00000328771|DHX34	ENSG00000134815|ENST00000328771|DHX34	MULTI-MATCH	A375_MHC_IP_R2	2		3	383.228001	1146.66217	-0.13777	-5.2798E-05	-0.16073	-6.1597E-05	-0.2985	-0.0001144	383.5622010644978	31.269	0.46058	31.988	31.719	32.18	0.71857	-0.15842	5.4006E-05	NaN	32.898	22	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3286600			30346	4612	21880	22046							0.09471034102671183
LGRIPWQAYF	10	Unmodified	_LGRIPWQAYF_					0	0	0		SLC5A7|p.G251R|1|0.55|ENSG00000115665|chr2:108006058-108006058|G/A|missense_variant	SLC5A7|p.G251R|1|0.55|ENSG00000115665|chr2:108006058-108006058|G/A|missense_variant	SLC5A7|p.G251R|1|0.55|ENSG00000115665|chr2:108006058-108006058|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	418.2820129394531	3	417.560869	1249.66078	0.15722	6.5651E-05	-0.84317	-0.00035207	-0.68594	-0.00028642	417.56064247811435	38.522	0.35822	38.522	38.371	38.73	0					10	6	2	0	0	0	0.93406	1	13133	13133		6.1918	2.6048	1	1595400			30347	29187	21881	22047	29658	29658					0.045934000139368436
LGRIPWQAYF	10	Unmodified	_LGRIPWQAYF_					0	0	0		SLC5A7|p.G251R|1|0.55|ENSG00000115665|chr2:108006058-108006058|G/A|missense_variant	SLC5A7|p.G251R|1|0.55|ENSG00000115665|chr2:108006058-108006058|G/A|missense_variant	SLC5A7|p.G251R|1|0.55|ENSG00000115665|chr2:108006058-108006058|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	417.560869	1249.66078	-0.33132	-0.00013835	-0.51768	-0.00021616	-0.84901	-0.00035451	417.5607509639484	37.58	0.3588	38.351	38.171	38.53	0.7709	-0.0852	0.00020738	NaN	6.1918	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2323200			30348	29187	21881	22047							0.045934000139368436
LGRKEKLKELY	11	Unmodified	_LGRKEKLKELY_					0	0	0			REV__ENST00000569075.5_1_15:42525398-42565582:-|nuORF	REV__ENST00000569075.5_1_15:42525398-42565582:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	689.1980590820312	2	688.916644	1375.81874	-0.63462	-0.0004372	-1.6888	-0.0011634	-2.3234	-0.0016006	688.9169167390653	105.32	0.2049	106.08	105.92	106.12	0.76308					5	3	2	0	0	0	0.99526	1	39800	39800		1.4819	0	1	836270	+		30349	17294	21882	22048	29659	29659					0.1458585448251597
LGRLANKFI	9	Unmodified	_LGRLANKFI_					0	0	0			REV__LGI4|p.S116F|1|0.33|ENSG00000153902|chr19:35132010-35132010|G/A|missense_variant	REV__LGI4|p.S116F|1|0.33|ENSG00000153902|chr19:35132010-35132010|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	516.7214965820312	2	516.321651	1030.62875	-0.78443	-0.00040502	0.15272	7.8855E-05	-0.6317	-0.00032616	516.321754751358	39.675	0.40381	39.675	39.441	39.845	0					16	7	3	0	0	0	0.40041	1	13606	13606		23.148	0	1	7804800	+		30350	26926	21883	22049	29660	29660					0.1146603233080441
LGRLDITKW	9	Unmodified	_LGRLDITKW_					0	0	0		nc|ENSG00000122224|Q9HBG7-3|LY9;nc|ENSG00000122224|Q9HBG7-2|LY9;nc|ENSG00000122224|Q9HBG7-4|LY9;ENSG00000122224|ENST00000263285|LY9;ENST00000490902.1_1_1:160768767-160771704:+|nuORF;ENST00000471816.1_1_1:160766002-160783471:+|nuORF;ENST00000474998.1_1_1:160766002-160769898:+|nuORF	nc|ENSG00000122224|Q9HBG7-3|LY9	nc|ENSG00000122224|Q9HBG7-3|LY9	MULTI-MSMS	A375_MHC_IP_R1	1	368.2858581542969	3	367.885353	1100.63423	0.31151	0.0001146	0.71605	0.00026342	1.0276	0.00037802	367.8855853459783	54.698	0.50861	54.698	54.467	54.975	0					23	9	4	0	0	0	0.6343	1	19551	19551		12.873	1.3779	1	6793100			30351	3769	21884	22050	29661	29661					0.08793711122621062
LGRLLRIPL	9	Unmodified	_LGRLLRIPL_					0	0	0			REV__nc|ENSG00000087460|P84996|GNAS	REV__nc|ENSG00000087460|P84996|GNAS	MULTI-MSMS	A375_MHC_IP_R1	1	351.633544921875	3	350.909721	1049.70733	-0.51927	-0.00018222	1.4286	0.00050129	0.90929	0.00031908	351.24473990715165	29.653	1.3504	29.653	29.353	30.703	0					60	26	3	0	0	0	0.72985	1	9563	9563		2.4985	0	1	15534000	+		30352	27128	21885	22051	29662	29662					0.18446884635886818
LGRLRGRRADH	11	Unmodified	_LGRLRGRRADH_					0	0	0		ENST00000295092.2_1_2:14774381-14774603:+|nuORF	ENST00000295092.2_1_2:14774381-14774603:+|nuORF	ENST00000295092.2_1_2:14774381-14774603:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	653.7749633789062	2	653.881793	1305.74903	-0.84049	-0.00054958	0.56467	0.00036923	-0.27581	-0.00018035	654.3837803442443	130.26	0.55746	130.48	130.15	130.7	0.2142					15	10	2	0	0	0	0.7342	1	51095	51095		4.897	0	1	7253300			30353	10492	21886	22052	29663	29663					0.10838833377124502
LGRLRTTL	8	Unmodified	_LGRLRTTL_					0	0	0		ENST00000446986.1_1_X:118601448-118602151:-|nuORF	ENST00000446986.1_1_X:118601448-118602151:-|nuORF	ENST00000446986.1_1_X:118601448-118602151:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	465.6980285644531	2	465.298176	928.581799	-0.79327	-0.00036911	0.48956	0.00022779	-0.30372	-0.00014132	465.2983429471388	40.689	0.45777	41.464	41.183	41.641	0.77451					13	8	2	0	0	0	0.94479	1	15079	15079		8.5933	0	1	3679100			30354	12042	21887	22053	29664	29664					0.11465172779639943
LGRMGEQSL	9	Unmodified	_LGRMGEQSL_					0	0	0			REV__ENSG00000125648|ENST00000301454|SLC25A23	REV__ENSG00000125648|ENST00000301454|SLC25A23	MULTI-SECPEP	A375_MHC_IP_R2	2	495.150146484375	2	495.755484	989.496415	-0.59928	-0.0002971	1.3592	0.00067384	0.75993	0.00037674	495.75405321870676	41.43	0.30286	42.205	42.047	42.35	0.77451					6	5	2	0	0	0	0.52144	1	15364	15364		16.942	0	1	563310	+		30355	18354	21888	22054	29665	29665					0.0012463953169117303
LGRPFALAAV	10	Unmodified	_LGRPFALAAV_					0	0	0			REV__ENST00000592391.5_1_19:14520811-14521407:-|nuORF	REV__ENST00000592391.5_1_19:14520811-14521407:-|nuORF	MSMS	A375_MHC_IP_R1	1	507.70806884765625	2	507.808377	1013.6022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.049	1	57.049	56.549	57.549	0								0	0	0	0.15047	1	20452	20452		16.942	2.3606	1		+		30356	26402	21889	22055	29666	29666					0.09594343439459863
LGRRALAL	8	Unmodified	_LGRRALAL_					0	0	0		ENSG00000166816|ENST00000450168|LDHD;nc|ENSG00000166816|Q86WU2|LDHD	ENSG00000166816|ENST00000450168|LDHD	ENSG00000166816|ENST00000450168|LDHD	MULTI-MSMS	A375_MHC_IP_R2	2	435.68731689453125	2	435.287611	868.56067	-0.40091	-0.00017451	0.15493	6.744E-05	-0.24597	-0.00010707	435.28762360518397	44.903	0.56122	45.672	45.39	45.951	0.7691					21	10	3	0	0	0	0.70179	1	16736	16736		34.187	0	1	6501400			30357	7113	21890	22056	29667	29667					0.12113207470781617
LGRRCMVYQP	10	Unmodified	_LGRRCMVYQP_					0	0	0		ENST00000430602.5_1_7:75155247-75157148:-|nuORF	ENST00000430602.5_1_7:75155247-75157148:-|nuORF	ENST00000430602.5_1_7:75155247-75157148:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	408.6428527832031	3	408.210966	1221.61107	-0.16601	-6.7766E-05	-0.41967	-0.00017132	-0.58568	-0.00023908	408.5450902332078	25.261	0.5601	25.261	25.053	25.613	0					13	10	2	0	0	0	0.70793	1	7369	7369		5.0475	0.93089	1	3824300			30358	11858	21891	22057	29668	29668					0.009126257419666217
LGRRKWPEG	9	Unmodified	_LGRRKWPEG_					0	0	0			REV__ENST00000560621.5_1_15:77287755-77315977:+|nuORF	REV__ENST00000560621.5_1_15:77287755-77315977:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	367.61700439453125	3	366.87708	1097.60941	-0.20583	-7.5513E-05	0.56739	0.00020816	0.36157	0.00013265	366.877315953581	58.537	0.61099	59.286	59.032	59.643	0.74894					14	11	2	0	0	0	0.75466	1	22192	22192		2.4985	0	1	744710	+		30359	26168	21892	22058	29669	29669					0.06451076039888903
LGRRQEFEIW	10	Unmodified	_LGRRQEFEIW_					0	0	0		ENST00000477545.1_1_13:19255671-19255737:+|nuORF	ENST00000477545.1_1_13:19255671-19255737:+|nuORF	ENST00000477545.1_1_13:19255671-19255737:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	445.16839599609375	3	445.238566	1332.69387	-0.4732	-0.00021069	0.73484	0.00032718	0.26164	0.00011649	445.5730164352997	66.708	0.81528	67.444	67.035	67.85	0.73631					20	15	2	0	0	0	0.94514	1	25413	25413		2.086	0.34373	1	1491200			30360	12442	21893	22059	29670	29670					0.0408298206600648
LGRRRRWKLWM	11	Unmodified	_LGRRRRWKLWM_					0	0	0			REV__ENST00000424349.1_1_3:14988719-14988935:-|nuORF	REV__ENST00000424349.1_1_3:14988719-14988935:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	519.2052001953125	3	519.973501	1556.89867	-0.43221	-0.00022474	2.7711	0.0014409	2.3389	0.0012162	519.973253534037	93.535	0.15149	93.535	93.433	93.584	0					4	2	2	0	0	0	1.0014	1	34356	34356		0.50596	0.09769	1	323730	+		30361	24625	21894	22060	29671	29671					0.14250062395376517
LGRSALTTR	9	Unmodified	_LGRSALTTR_					0	0	0		ENST00000216068.8_1_22:39174586-39174781:-|nuORF	ENST00000216068.8_1_22:39174586-39174781:-|nuORF	ENST00000216068.8_1_22:39174586-39174781:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	488.1903991699219	2	487.790715	973.566878	0.23344	0.00011387	-0.5356	-0.00026126	-0.30216	-0.00014739	487.79037781566393	114.14	1.4719	114.14	112.94	114.41	0					64	28	3	0	0	0	0.6898	1	41522	41522		7.9102	0	1	21450000			30362	10088	21895	22061	29672	29672					0.07903680911636002
LGRSFSHA	8	Unmodified	_LGRSFSHA_					0	0	0		nc|ENSG00000087303|Q14112-2|NID2;ENSG00000087303|ENST00000216286|NID2	nc|ENSG00000087303|Q14112-2|NID2	nc|ENSG00000087303|Q14112-2|NID2	MSMS	A375_MHC_IP_R1	1	437.6507263183594	2	437.730126	873.4457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.126	1	42.126	41.626	42.626	0								0	0	0	0.16876	1	14582	14582		24.674	10.092	1				30363	1870	21896	22062	29673	29673					0.003914782690003449
LGRSFSHA	8	Unmodified	_LGRSFSHA_					0	0	0		nc|ENSG00000087303|Q14112-2|NID2;ENSG00000087303|ENST00000216286|NID2	nc|ENSG00000087303|Q14112-2|NID2	nc|ENSG00000087303|Q14112-2|NID2	MSMS	A375_MHC_IP_R2	2	437.6505432128906	2	437.730126	873.4457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.31	1	42.084	41.584	42.584	0.77451								0	0	0	0.16876	1	15323	15323		24.674	7.7316	1				30364	1870	21896	22062	29674	29674					0.003914782690003449
LGRSWAFFLPQ	11	Unmodified	_LGRSWAFFLPQ_					0	0	0		ENST00000367463.4_1_6:149397103-149397247:+|nuORF	ENST00000367463.4_1_6:149397103-149397247:+|nuORF	ENST00000367463.4_1_6:149397103-149397247:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	441.6763610839844	3	441.239907	1320.69789	-0.13188	-5.819E-05	0.53666	0.00023679	0.40478	0.0001786	441.2399187035733	50.474	0.55974	50.474	50.204	50.764	0					14	10	2	0	0	0	0.99625	1	17891	17891		1.2148	0	1	4729900			30365	11091	21897	22063	29675	29675					0.05037071559695505
LGRTRPIL	8	Unmodified	_LGRTRPIL_					0	0	0			REV__ENSG00000126231|ENST00000375547|PROZ	REV__ENSG00000126231|ENST00000375547|PROZ	MULTI-SECPEP	A375_MHC_IP_R2	2	463.7002868652344	2	463.300719	924.586885	-0.92343	-0.00042783	0.36923	0.00017107	-0.5542	-0.00025676	463.30086048819635	38.583	0.45811	39.357	39.098	39.556	0.77451					19	8	3	0	0	0	0.91495	1	14213	14213		18.135	3.5533	1	3733900	+		30366	18382	21898	22064	29676	29676					0.12157476642266829
LGRVSHIK	8	Unmodified	_LGRVSHIK_					0	0	0		nc|ENSG00000173960|P68543-2|UBXN2A	nc|ENSG00000173960|P68543-2|UBXN2A	nc|ENSG00000173960|P68543-2|UBXN2A	MULTI-SECPEP	A375_MHC_IP_R2	2	454.6531066894531	2	455.285069	908.555585	-0.26122	-0.00011893	-0.40774	-0.00018564	-0.66896	-0.00030457	455.2849759539199	32.605	0.50896	33.342	33.162	33.671	0.73692					13	9	2	0	0	0	0.972	1	11628	11628		4.3292	0	1	2176300			30367	14773	21899	22065	29677	29677					0.09764903608174791
LGRWSPFSVP	10	Unmodified	_LGRWSPFSVP_					0	0	0		CCDC185|p.S186F|1|0.31|ENSG00000178395|chr1:223394032-223394032|C/T|missense_variant	CCDC185|p.S186F|1|0.31|ENSG00000178395|chr1:223394032-223394032|C/T|missense_variant	CCDC185|p.S186F|1|0.31|ENSG00000178395|chr1:223394032-223394032|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	383.2503967285156	3	382.541586	1144.60293	0.5998	0.00022945	-1.6279	-0.00062274	-1.0281	-0.00039329	382.5413800796632	22.816	0.50151	22.816	22.623	23.125	0					13	9	2	0	0	0	0.92351	1	6250	6250		6.1918	0	1	1574200			30368	311	21900	22066	29678	29678					0.036411380885283506
LGRYCTCVL	9	Unmodified	_LGRYCTCVL_					0	0	0		ENST00000489318.1_1_9:97523006-97535511:+|nuORF	ENST00000489318.1_1_9:97523006-97535511:+|nuORF	ENST00000489318.1_1_9:97523006-97535511:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	514.6568603515625	2	514.256805	1026.49906	-0.6758	-0.00034753	0.40011	0.00020576	-0.27569	-0.00014177	514.2571306913796	94.721	0.51112	94.721	94.394	94.905	0					20	9	3	0	0	0	0.091096	1	34788	34788		52.268	18.166	1	2179900			30369	12630	21901	22067	29679	29679					-0.013132283350159923
LGRYCTCVL	9	Unmodified	_LGRYCTCVL_					0	0	0		ENST00000489318.1_1_9:97523006-97535511:+|nuORF	ENST00000489318.1_1_9:97523006-97535511:+|nuORF	ENST00000489318.1_1_9:97523006-97535511:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	514.6567993164062	2	514.256805	1026.49906	-0.59185	-0.00030436	0.54676	0.00028117	-0.045097	-2.3191E-05	514.2571079576696	93.897	0.50677	94.642	94.412	94.919	0.74474					19	9	3	0	0	0	0.05754	1	35687	35687		61.357	19.263	1	2496300			30370	12630	21901	22067	29680	29680					-0.013132283350159923
LGSARIHV	8	Unmodified	_LGSARIHV_					0	0	0			REV__ENST00000466391.1_1_3:194371468-194371945:-|nuORF	REV__ENST00000466391.1_1_3:194371468-194371945:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	427.1558532714844	2	426.756144	851.497735	-0.4517	-0.00019277	0.034922	1.4903E-05	-0.41678	-0.00017786	426.75615393636133	41.112	0.3048	41.886	41.692	41.997	0.77451					15	5	3	0	0	0	0.93661	1	15270	15270		10.824	0	1	2255000	+		30371	25037	21902	22068	29681	29681					0.0660464168274757
LGSDIAGL	8	Unmodified	_LGSDIAGL_					0	0	0		ENST00000579735.1_1_18:1363209-1363299:-|nuORF	ENST00000579735.1_1_18:1363209-1363299:-|nuORF	ENST00000579735.1_1_18:1363209-1363299:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	745.8082275390625	1	745.409046	744.401769	-0.85933	-0.00064056	0.48927	0.00036471	-0.37006	-0.00027585	745.4093520623419	98.312	0.56032	99.072	98.691	99.251	0.75977					18	10	2	0	0	0	0.48416	1	37248	37248		49.669	0	1	4435300			30372	13666	21903	22069	29682	29682					0.019344490519983992
LGSDLFSTIY	10	Unmodified	_LGSDLFSTIY_					0	0	0			REV__nc|ENSG00000142303|Q9H324|ADAMTS10	REV__nc|ENSG00000142303|Q9H324|ADAMTS10	MULTI-MSMS	A375_MHC_IP_R2	2	558.7186279296875	2	558.284597	1114.55464	-0.76252	-0.0004257	0.20122	0.00011234	-0.5613	-0.00031337	558.2846369132625	64.996	0.65899	65.734	65.41	66.069	0.73812					28	11	3	0	0	0	0.66712	1	24765	24765		15.847	0.5987	1	12830000	+		30373	19304	21904	22070	29683	29683					0.0019459965797068435
LGSELKPAV	9	Unmodified	_LGSELKPAV_					0	0	0		ENST00000376257.7_1_6:31127078-31127210:+|nuORF	ENST00000376257.7_1_6:31127078-31127210:+|nuORF	ENST00000376257.7_1_6:31127078-31127210:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	456.6346130371094	2	457.271293	912.528032	-0.081982	-3.7488E-05	-0.16496	-7.5431E-05	-0.24694	-0.00011292	457.2710764200425	43.819	0.50331	44.588	44.329	44.833	0.76909					20	9	3	0	0	0	0.16229	1	16363	16363		39.957	0	1	3219600			30374	11281	21905	22071	29684	29684					0.06826955557289693
LGSEVLRQFA	10	Unmodified	_LGSEVLRQFA_					0	0	0			REV__ENST00000392474.6_1_12:121676981-121677107:-|nuORF	REV__ENST00000392474.6_1_12:121676981-121677107:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	560.7106323242188	2	560.31148	1118.60841	-0.94189	-0.00052775	-0.46364	-0.00025978	-1.4055	-0.00078753	560.3111865346598	51.822	0.51043	52.574	52.372	52.882	0.75225					15	9	2	0	0	0	0.15002	1	19527	19527		66.457	36.616	1	3621700	+		30375	24273	21906	22072	29685	29685					0.053848168803369845
LGSGICSNRET	11	Unmodified	_LGSGICSNRET_					0	0	0		CPS1|p.P601S|1|0.36|ENSG00000021826|chr2:210602295-210602295|C/T|missense_variant	CPS1|p.P601S|1|0.36|ENSG00000021826|chr2:210602295-210602295|C/T|missense_variant	CPS1|p.P601S|1|0.36|ENSG00000021826|chr2:210602295-210602295|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	569.1444702148438	2	568.771862	1135.52917	-0.2126	-0.00012092	-0.11769	-6.6939E-05	-0.33029	-0.00018786	569.2730642778764	81.928	0.50702	81.928	81.758	82.265	0					15	9	2	0	0	0	0.92455	1	29967	29967		21.537	3.402	1	3470500			30376	650	21907	22073	29686	29686					-0.03317198136141997
LGSGLIGAPL	10	Unmodified	_LGSGLIGAPL_					0	0	0			REV__ENST00000519589.1_1_8:133153289-133492518:-|nuORF	REV__ENST00000519589.1_1_8:133153289-133492518:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	449.67352294921875	2	449.273835	896.533118	-0.35833	-0.00016099	-0.0010779	-4.8427E-07	-0.35941	-0.00016147	449.2737686637301	65.034	1.016	65.772	65.359	66.375	0.73811					46	19	4	0	0	0	0.079406	1	24591	24591		68.081	1.624	1	13010000	+		30377	21799	21908	22074	29687	29687					0.08071259419898524
LGSGNDFEV	9	Unmodified	_LGSGNDFEV_					0	0	0		nc|ENSG00000086205|Q04609-6|FOLH1;ENST00000529567.5_1_11:89372457-89431764:+|nuORF;nc|ENSG00000086205|Q04609-3|FOLH1;nc|ENSG00000086205|Q04609-9|FOLH1;nc|ENSG00000086205|Q04609-8|FOLH1;FOLH1|p.F705Sfs*24|1|0.63|ENSG00000086205|chr11:49146895-49146895|A/-|frameshift_variant;nc|ENSG00000086205|Q04609-7|FOLH1;ENSG00000086205|ENST00000256999|FOLH1;nc|ENSG00000290503|Q9HBA9|FOLH1B;nc|ENSG00000086205|Q04609-10|FOLH1	nc|ENSG00000086205|Q04609-6|FOLH1	nc|ENSG00000086205|Q04609-6|FOLH1	MSMS	A375_MHC_IP_R1	1	469.1644592285156	2	469.216714	936.418876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.83	1	101.83	101.33	102.33	0								0	0	0	0.14905	1	37421	37421		23.148	5.0134	1				30378	1832	21909	22075	29688	29688					-0.051876751328450155
LGSIVYIH	8	Unmodified	_LGSIVYIH_					0	0	0		tr|U7SUZ7|U7SUZ7_FUSNUDUF4357domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01067PE=4SV=1	tr|U7SUZ7|U7SUZ7_FUSNUDUF4357domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01067PE=4SV=1	tr|U7SUZ7|U7SUZ7_FUSNUDUF4357domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01067PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	450.68719482421875	2	451.260728	900.506903	-0.072794	-3.2849E-05	-0.10275	-4.6366E-05	-0.17554	-7.9216E-05	451.26069312211854	78.051	0.30635	78.051	77.895	78.201	0					9	5	2	0	0	0	0.96296	1	28434	28434		15.768	1.1865	1	710050			30379	29781	21910	22076	29689	29689					0.05266990248424008
LGSKFWDS	8	Unmodified	_LGSKFWDS_					0	0	0		nc|ENSG00000108846|O15438-3|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3	nc|ENSG00000108846|O15438-3|ABCC3;ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-SECPEP	A375_MHC_IP_R2	2	470.6318664550781	2	470.232168	938.449782	-0.9125	-0.00042909	-0.16275	-7.6531E-05	-1.0752	-0.00050562	470.2320716125646	61.669	0.70432	62.414	62.172	62.876	0.74503					26	13	3	0	0	0	0.93416	1	23364	23364		14.582	0	1	3798200			30380	2844;14536	21911	22077	29690	29690					-0.021904770279547847
LGSKRGEW	8	Unmodified	_LGSKRGEW_					0	0	0			REV__ENST00000379789.8_1_10:6275938-6276049:+|nuORF	REV__ENST00000379789.8_1_10:6275938-6276049:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	467.1738586425781	2	466.751059	931.487565	-0.56122	-0.00026195	0.29724	0.00013874	-0.26398	-0.00012321	466.7512810249957	41.25	0.50792	41.25	41.063	41.571	0					13	9	2	0	0	0	0.92636	1	14166	14166		7.2892	2.5332	1	2281100	+		30381	24205	21912	22078	29691	29691					0.01908033957522548
LGSLCYCTHY	10	Unmodified	_LGSLCYCTHY_					0	0	0			REV__nc|ENSG00000257365|P49356-2|FNTB	REV__nc|ENSG00000257365|P49356-2|FNTB	MULTI-SECPEP	A375_MHC_IP_R2	2	387.31683349609375	3	387.168544	1158.4838	-0.37373	-0.0001447	-0.53119	-0.00020566	-0.90492	-0.00035036	387.1684126850881	40.943	0.20392	41.718	41.59	41.794	0.77451					6	3	2	0	0	0	0.94587	1	15131	15131		1.9064	1.6705	1	837300	+		30382	22891	21913	22079	29692	29692					-0.08910139922863891
LGSLEHLDLSY	11	Unmodified	_LGSLEHLDLSY_					0	0	0		ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	MULTI-SECPEP	A375_MHC_IP_R2	2	416.6502990722656	3	416.215316	1245.62412	-0.42897	-0.00017854	-0.17805	-7.4108E-05	-0.60702	-0.00025265	416.2154216802395	34.097	0.20161	34.85	34.702	34.904	0.75225					5	3	2	0	0	0	0.98591	1	12204	12204		1.2148	0	1	2207000			30383	4884	21914	22080	29693	29693					0.0111305860673383
LGSLNESHSS	10	Unmodified	_LGSLNESHSS_					0	0	0		ENST00000479887.1_1_7:143949295-143949613:-|nuORF	ENST00000479887.1_1_7:143949295-143949613:-|nuORF	ENST00000479887.1_1_7:143949295-143949613:-|nuORF	MSMS	A375_MHC_IP_R2	2	515.6630859375	2	515.743628	1029.4727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.116	1	72.85	72.35	73.35	0.73421								0	0	0	0.13854	1	27366	27366		30.637	11.198	1				30384	12485	21915	22081	29694	29694					-0.0408550270115029
LGSLPDDFVCY	11	Unmodified	_LGSLPDDFVCY_					0	0	0		ENSG00000178607|ENST00000433197|ERN1	ENSG00000178607|ENST00000433197|ERN1	ENSG00000178607|ENST00000433197|ERN1	MSMS	A375_MHC_IP_R1	1	614.6817626953125	2	614.781364	1227.54818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.41	1	33.41	32.91	33.91	0								0	0	0	0.13869	1	10905	10905		27.629	4.8925	1				30385	8169	21916	22082	29695	29695					-0.05649661565053066
LGSLQVRHER	10	Unmodified	_LGSLQVRHER_					0	0	0			REV__ENST00000539594.5_1_11:64073071-64081459:+|nuORF	REV__ENST00000539594.5_1_11:64073071-64081459:+|nuORF	MSMS	A375_MHC_IP_R1	1	597.7505493164062	2	597.838728	1193.6629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.32	1	130.32	129.82	130.82	0								0	0	0	0.15451	1	50145	50145		6.2058	0.47393	1		+		30386	25944	21917	22083	29696	29696					0.07381828751749708
LGSLRNIL	8	Unmodified	_LGSLRNIL_					0	0	0		ENST00000447566.5_1_22:41166840-41215302:-|nuORF;ENSG00000100372|ENST00000435456|SLC25A17	ENST00000447566.5_1_22:41166840-41215302:-|nuORF	ENST00000447566.5_1_22:41166840-41215302:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	443.6793518066406	2	443.279452	884.544351	-0.26193	-0.00011611	0.056625	2.5101E-05	-0.2053	-9.1006E-05	443.27942153145125	68.055	0.96386	68.79	68.409	69.373	0.73511					37	18	3	0	0	0	0.55372	1	25786	25786		32.305	3.8186	1	3358100			30387	2169	21918	22084	29697	29697					0.09746081514037996
LGSLTYLDRL	10	Unmodified	_LGSLTYLDRL_					0	0	0			REV__nc|ENSG00000105520|Q96GM1-2|PLPPR2	REV__nc|ENSG00000105520|Q96GM1-2|PLPPR2	MULTI-MSMS	A375_MHC_IP_R2	2	384.62127685546875	3	384.220401	1149.63937	-0.22235	-8.5431E-05	1.8992	0.00072971	1.6769	0.00064428	384.2214726925363	50.733	0.65656	51.488	51.209	51.866	0.75406					22	12	3	0	0	0	0.69726	1	19075	19075		13.519	0	1	3558600	+		30388	17390	21919	22085	29698	29698					0.07053970194556314
LGSMNFSST	9	Unmodified	_LGSMNFSST_					0	0	0		tr|U7SYR2|U7SYR2_FUSNUPLDphosphodiesterasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00883PE=4SV=1	tr|U7SYR2|U7SYR2_FUSNUPLDphosphodiesterasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00883PE=4SV=1	tr|U7SYR2|U7SYR2_FUSNUPLDphosphodiesterasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00883PE=4SV=1	MSMS	A375_MHC_IP_R1	1	472.1246032714844	2	472.213117	942.411682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.747	1	43.747	43.247	44.247	0								0	0	0	0.15069	1	15227	15227		20.454	2.3186	1				30389	29841	21920	22086	29699	29699					-0.061827310049238804
LGSMNFSST	9	Unmodified	_LGSMNFSST_					0	0	0		tr|U7SYR2|U7SYR2_FUSNUPLDphosphodiesterasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00883PE=4SV=1	tr|U7SYR2|U7SYR2_FUSNUPLDphosphodiesterasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00883PE=4SV=1	tr|U7SYR2|U7SYR2_FUSNUPLDphosphodiesterasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00883PE=4SV=1	MSMS	A375_MHC_IP_R2	2	472.1241149902344	2	472.213117	942.411682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.014	1	43.786	43.286	44.286	0.7724								0	0	0	0.15069	1	16016	16016		20.454	2.3186	1				30390	29841	21920	22086	29700	29700					-0.061827310049238804
LGSPHSGLSW	10	Unmodified	_LGSPHSGLSW_					0	0	0			REV__ENST00000488315.5_1_7:149570449-149570881:-|nuORF	REV__ENST00000488315.5_1_7:149570449-149570881:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	521.1613159179688	2	520.761623	1039.50869	-0.49542	-0.000258	-0.90131	-0.00046937	-1.3967	-0.00072736	520.7613829346925	55.456	0.45813	55.456	55.126	55.584	0					13	8	2	0	0	0	0.85226	1	19830	19830		14.838	0	1	1602200	+		30391	25348	21921	22087	29701	29701					-0.009480007336151175
LGSPYVKETY	10	Unmodified	_LGSPYVKETY_					0	0	0		ENST00000472077.1_1_2:27608458-27608728:-|nuORF	ENST00000472077.1_1_2:27608458-27608728:-|nuORF	ENST00000472077.1_1_2:27608458-27608728:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	578.6968383789062	2	578.797872	1155.58119	-0.10666	-6.1732E-05	-2.8866	-0.0016708	-2.9933	-0.0017325	579.2972345213728	93.52	0.20345	93.52	93.381	93.584	0					5	3	2	0	0	0	0.91556	1	34360	34360		10.074	7.7712	1	785310			30392	12366	21922	22088	29702	29702					0.009622885492944988
LGSQKNVSPGF	11	Unmodified	_LGSQKNVSPGF_					0	0	0		nc|ENSG00000112053|Q96RN1-2|SLC26A8;ENSG00000112053|ENST00000490799|SLC26A8;nc|ENSG00000112053|Q96RN1-3|SLC26A8	nc|ENSG00000112053|Q96RN1-2|SLC26A8	nc|ENSG00000112053|Q96RN1-2|SLC26A8	MULTI-SECPEP	A375_MHC_IP_R1	1	567.643310546875	2	567.301113	1132.58767	-0.38713	-0.00021962	3.4624	0.0019642	3.0753	0.0017446	567.302575879515	55	0.25444	55	54.771	55.025	0					6	4	2	0	0	0	0.98416	1	19591	19591		14.838	10.509	1	661440			30393	3045	21923	22089	29703	29703					0.026682265006684247
LGSQLGEKAE	10	Unmodified	_LGSQLGEKAE_					0	0	0		RP1L1|p.E1650K|1|0.25|ENSG00000183638|chr8:10609150-10609150|C/T|missense_variant	RP1L1|p.E1650K|1|0.25|ENSG00000183638|chr8:10609150-10609150|C/T|missense_variant	RP1L1|p.E1650K|1|0.25|ENSG00000183638|chr8:10609150-10609150|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	516.1931762695312	2	516.272021	1030.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.643	1	83.643	83.143	84.143	0								0	0	0	0.11428	1	30611	30611		41.84	1.6004	1				30394	29092	21924	22090	29704	29704					0.01544544855391905
LGSRFTFSKG	10	Unmodified	_LGSRFTFSKG_					0	0	0			REV__ENSG00000267041|ENST00000591344|ZNF850	REV__ENSG00000267041|ENST00000591344|ZNF850	MULTI-SECPEP	A375_MHC_IP_R1	1	366.61370849609375	3	367.201341	1098.58219	0.38577	0.00014166	0.19937	7.3208E-05	0.58514	0.00021486	367.2014605286588	35.181	0.45807	35.181	35.064	35.522	0					12	8	2	0	0	0	0.83355	1	11665	11665		14.957	3.4625	1	1060300	+		30395	22928	21925	22091	29705	29705					0.03684547708849095
LGSRGRCL	8	Unmodified	_LGSRGRCL_					0	0	0		ENST00000609399.1_1_10:14920402-14920654:-|nuORF	ENST00000609399.1_1_10:14920402-14920654:-|nuORF	ENST00000609399.1_1_10:14920402-14920654:-|nuORF	MSMS	A375_MHC_IP_R2	2	431.2879333496094	2	431.239804	860.465055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.316	1	46.081	45.581	46.581	0.76519								0	0	0	0.16876	1	16934	16934		6.3541	0	1				30396	13935	21926	22092	29706	29706					0.029241112882459674
LGSSENSYWRE	11	Unmodified	_LGSSENSYWRE_					0	0	0		ENST00000598513.5_1_19:53740510-53740558:-|nuORF	ENST00000598513.5_1_19:53740510-53740558:-|nuORF	ENST00000598513.5_1_19:53740510-53740558:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	442.67144775390625	3	443.201958	1326.58404	-0.72246	-0.0003202	0.3408	0.00015104	-0.38167	-0.00016915	443.2020262958504	38.501	0.56013	39.276	39.047	39.607	0.77451					16	10	2	0	0	0	0.99606	1	14312	14312		2.8433	2.3888	1	2028100			30397	13853	21927	22093	29707	29707					-0.06618488063850236
LGSSENSYWRE	11	Unmodified	_LGSSENSYWRE_					0	0	0		ENST00000598513.5_1_19:53740510-53740558:-|nuORF	ENST00000598513.5_1_19:53740510-53740558:-|nuORF	ENST00000598513.5_1_19:53740510-53740558:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	443.201958	1326.58404	0.038801	1.7197E-05	0.030261	1.3412E-05	0.069062	3.0608E-05	443.53629454368377	39.263	0.45726	39.263	39.033	39.491	0	-0.0061679	-0.00011448	NaN	2.8433	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2025000			30398	13853	21927	22093							-0.06618488063850236
LGSSISKPDVI	11	Unmodified	_LGSSISKPDVI_					0	0	0		ENSG00000128000|ENST00000434248|ZNF780B;ENST00000221355.10_1_19:40542476-40556265:-|nuORF;nc|ENSG00000197782|O75290-2|ZNF780A;ENSG00000197782|ENST00000683561|ZNF780A	ENSG00000128000|ENST00000434248|ZNF780B	ENSG00000128000|ENST00000434248|ZNF780B	MULTI-SECPEP	A375_MHC_IP_R2	2	557.7293090820312	2	558.318971	1114.62339	-0.65091	-0.00036342	0.76215	0.00042552	0.11124	6.2109E-05	558.3189670315353	70.116	0.45607	70.85	70.693	71.149	0.73421					14	8	3	0	0	0	0.49142	1	26537	26537		26.268	0	1	1174500			30399	4117	21928	22094	29708	29708					0.0706626395767671
LGSSITSDW	9	Unmodified	_LGSSITSDW_					0	0	0			REV__ENSG00000134007|ENST00000256389|ADAM20	REV__ENSG00000134007|ENST00000256389|ADAM20	MULTI-SECPEP	A375_MHC_IP_R1	1	482.67138671875	2	483.232364	964.450176	-0.3087	-0.00014917	1.4288	0.00069043	1.1201	0.00054126	483.23265595966194	50.822	0.40457	50.822	50.561	50.966	0					10	7	2	0	0	0	0.3607	1	18035	18035		42.095	22.838	1	1156500	+		30400	18745	21929	22095	29709	29709					-0.033471020987576594
LGSTLLRVE	9	Unmodified	_LGSTLLRVE_					0	0	0			REV__ENST00000487805.6_1_3:49737575-49737935:+|nuORF	REV__ENST00000487805.6_1_3:49737575-49737935:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	494.69537353515625	2	494.295299	986.576045	-0.40385	-0.00019962	0.1987	9.8215E-05	-0.20515	-0.0001014	494.29539865941223	87.697	0.50531	88.429	88.166	88.671	0.7318					16	9	2	0	0	0	0.3607	1	33351	33351		34.102	6.4736	1	3914100	+		30401	25340	21930	22096	29710	29710					0.08222029477326487
LGSTSGAPLW	10	Unmodified	_LGSTSGAPLW_					0	0	0			REV__ENST00000528684.5_1_11:67560680-67565163:-|nuORF	REV__ENST00000528684.5_1_11:67560680-67565163:-|nuORF	MSMS	A375_MHC_IP_R2	2	494.69537353515625	2	494.758549	987.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.68	1	88.412	87.912	88.912	0.7318								0	0	0	0.14304	1	33351	33351		28.487	8.0332	1		+		30402	25772	21931	22097	29711	29711					0.008294810348388637
LGSVTEKLQY	10	Unmodified	_LGSVTEKLQY_					0	0	0		ENST00000469209.1_1_17:38345476-38347143:+|nuORF;ENST00000545893.5_1_17:38345052-38350037:+|nuORF;nc|ENSG00000108352|Q9UHV5-2|RAPGEFL1;nc|ENSG00000108352|Q9UHV5-3|RAPGEFL1;nc|ENSG00000108352|Q9UHV5|RAPGEFL1;ENSG00000108352|ENST00000620260|RAPGEFL1	ENST00000469209.1_1_17:38345476-38347143:+|nuORF	ENST00000469209.1_1_17:38345476-38347143:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	569.656005859375	2	569.311146	1136.60774	-0.12559	-7.1499E-05	-0.71726	-0.00040834	-0.84285	-0.00047984	569.3100384790523	54.301	0.50291	54.301	53.861	54.364	0					13	9	2	0	0	0	0.70528	1	19387	19387		32.786	21.291	1	867120			30403	2794	21932	22098	29712	29712					0.04489977440630355
LGSYKKQKM	9	Unmodified	_LGSYKKQKM_					0	0	0			REV__ENST00000455773.7_1_10:12240750-12259375:+|nuORF	REV__ENST00000455773.7_1_10:12240750-12259375:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	361.5948181152344	3	361.539077	1081.5954	-0.54969	-0.00019874	-0.79248	-0.00028651	-1.3422	-0.00048525	361.5387797415479	37.698	0.86565	38.472	37.77	38.636	0.77451					29	16	2	0	0	0	0.67152	1	13609	13609		9.544	1.3884	1	2097100	+		30404	24930	21933	22099	29713	29713					0.05786662496598183
LGTDLLEISL	10	Unmodified	_LGTDLLEISL_					0	0	0			REV__ENSG00000174145|ENST00000309447|NWD2	REV__ENSG00000174145|ENST00000309447|NWD2	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1493530273438	2	537.308072	1072.60159	-0.72343	-0.0003887	0.90452	0.00048601	0.18109	9.7301E-05	537.8100622499027	61.219	0.91685	61.219	60.871	61.788	0					21	17	2	0	0	0	0.85226	1	22146	22146		6.2058	0	1	2433900	+		30405	21268	21934	22100	29714	29714					0.06819459209100387
LGTEHGDYYS	10	Unmodified	_LGTEHGDYYS_					0	0	0		ENSG00000267221|ENST00000587304|C17orf113	ENSG00000267221|ENST00000587304|C17orf113	ENSG00000267221|ENST00000587304|C17orf113	MULTI-MSMS	A375_MHC_IP_R2	2	571.7166137695312	2	571.24346	1140.47237	-0.25593	-0.0001462	-1.9095	-0.0010908	-2.1655	-0.001237	571.2423526569526	45.913	0.45279	46.679	46.403	46.855	0.76519					14	8	2	0	0	0	0.6806	1	17101	17101		14.838	1.7958	1	1810600			30406	9965	21935	22101	29715	29715					-0.09224922421003612
LGTGVGSPFDK	11	Unmodified	_LGTGVGSPFDK_					0	0	0			REV__ENST00000278175.9_2_11:10328233-10328284:+|nuORF	REV__ENST00000278175.9_2_11:10328233-10328284:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	539.3676147460938	2	539.282389	1076.55022	-0.85341	-0.00046023	-0.47415	-0.0002557	-1.3276	-0.00071593	539.282246420366	76.818	0.65636	77.56	77.2	77.856	0.74199					18	12	2	0	0	0	0.80621	1	29138	29138		24.991	4.5373	1	1375900	+		30407	23307	21936	22102	29716	29716					0.015011352350256857
LGTIGLTGI	9	Unmodified	_LGTIGLTGI_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ;PKDREJ|p.H1153Y|1|0.26|ENSG00000130943|chr22:46259866-46259866|G/A|missense_variant	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-MSMS	A375_MHC_IP_R1	1	423.1604919433594	2	422.760561	843.506569	-0.090571	-3.829E-05	0.28184	0.00011915	0.19127	8.0862E-05	422.7606439808848	64.72	0.66064	64.72	64.444	65.105	0					27	12	3	0	0	0	0.0094266	1	23393	23393		97.075	0	1	5331600			30408	4296	21937	22103	29717	29717					0.07855570528568023
LGTIGLTGI	9	Unmodified	_LGTIGLTGI_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ;PKDREJ|p.H1153Y|1|0.26|ENSG00000130943|chr22:46259866-46259866|G/A|missense_variant	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	422.760561	843.506569	-0.068521	-2.8968E-05	0.14225	6.0136E-05	0.073726	3.1168E-05	422.7605732468411	63.735	0.65988	64.475	64.191	64.85	0.74022	-0.1227	-5.9396E-05	NaN	97.075	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5645200			30409	4296	21937	22103							0.07855570528568023
LGTIHPDPE	9	Unmodified	_LGTIHPDPE_					0	0	0		MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;ENST00000470521.1_1_1:222791452-222819114:+|nuORF	MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant;ENST00000470521.1_1_1:222791452-222819114:+|nuORF	MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	490.1479797363281	2	489.748182	977.481811	-0.65545	-0.00032101	-0.0491	-2.4047E-05	-0.70455	-0.00034505	489.7481382395039	41.378	0.50792	41.378	41.063	41.571	0					14	9	2	0	0	0	0.60917	1	14281	14281		19.257	0	1	3240600			30410	6080;12336	21938	22104	29718	29718					-0.007831093448089632
LGTKFSGF	8	Unmodified	_LGTKFSGF_					0	0	0			REV__nc|ENSG00000121274|Q8NDF8-5|TENT4B	REV__nc|ENSG00000121274|Q8NDF8-5|TENT4B	MULTI-SECPEP	A375_MHC_IP_R2	2	429.1314392089844	2	428.731803	855.449054	-0.52529	-0.00022521	0.14632	6.2734E-05	-0.37897	-0.00016248	428.7318160059671	60.236	0.56138	60.981	60.701	61.263	0.74503					21	10	3	0	0	0	0.77651	1	22766	22766		26.884	3.7352	1	5776100	+		30411	18154	21939	22105	29719	29719					0.015547283230148423
LGTLPEPSF	9	Unmodified	_LGTLPEPSF_					0	0	0			REV__ENSG00000204510|ENST00000697200|PRAMEF7	REV__ENSG00000204510|ENST00000697200|PRAMEF7	MULTI-SECPEP	A375_MHC_IP_R2	2	481.1484069824219	2	480.755475	959.496398	-0.57817	-0.00027796	-2.4153	-0.0011612	-2.9934	-0.0014391	480.75470970951056	31.933	0.60777	32.67	32.249	32.857	0.73692					20	11	4	0	0	0	0.43707	1	11236	11236		21.747	0.20967	1	3037400	+		30412	21685	21940	22106	29720	29720					0.015029628033289555
LGTRAAFE	8	Unmodified	_LGTRAAFE_					0	0	0		ENST00000535009.5_1_11:68816453-68846494:+|nuORF;ENST00000442692.2_1_11:68822646-68853210:+|nuORF;ENSG00000162341|ENST00000294309|TPCN2	ENST00000535009.5_1_11:68816453-68846494:+|nuORF	ENST00000535009.5_1_11:68816453-68846494:+|nuORF	MSMS	A375_MHC_IP_R2	2	432.658447265625	2	432.732335	863.450116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.586	1	38.357	37.857	38.857	0.77122								0	0	0	0.16876	1	13764	13764		21.747	0	1				30413	6519	21941	22107	29721	29721					0.012929426918958598
LGTRLSSLL	9	Unmodified	_LGTRLSSLL_					0	0	0			REV__ENSG00000088053|ENST00000310373|GP6	REV__ENSG00000088053|ENST00000310373|GP6	MULTI-MSMS	A375_MHC_IP_R2	2	480.69781494140625	2	480.297842	958.581131	-0.54381	-0.00026119	0.032216	1.5473E-05	-0.51159	-0.00024572	480.29807024071613	78.142	0.45912	78.885	78.572	79.031	0.74293					14	8	2	0	0	0	0.11629	1	29690	29690		47.749	3.8904	1	1877600	+		30414	16879	21942	22108	29722	29722					0.10018333339962737
LGTSGTPFFL	10	Unmodified	_LGTSGTPFFL_					0	0	0		MUC16|p.S12532F|1|0.35|ENSG00000181143|chr19:8908616-8908616|G/A|missense_variant	MUC16|p.S12532F|1|0.35|ENSG00000181143|chr19:8908616-8908616|G/A|missense_variant	MUC16|p.S12532F|1|0.35|ENSG00000181143|chr19:8908616-8908616|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	520.71826171875	2	520.276575	1038.5386	-0.51545	-0.00026818	-0.18872	-9.8187E-05	-0.70417	-0.00036636	520.2761879675124	99.024	0.30266	99.783	99.556	99.858	0.75977					7	5	2	0	0	0	0.70329	1	37543	37543		10.824	0	1	1597500			30415	14420	21943	22109	29723	29723					0.020869382117098212
LGTTTRFRV	9	Unmodified	_LGTTTRFRV_					0	0	0			REV__nc|ENSG00000136758|Q96TA2-3|YME1L1	REV__nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	A375_MHC_IP_R2	2	351.2730407714844	3	350.873336	1049.59818	-0.49925	-0.00017517	0.19992	7.0148E-05	-0.29932	-0.00010502	350.8733625576716	18.851	0.20984	19.454	19.423	19.633	0.60308					6	5	2	0	0	0	0.58047	1	5665	5665		10.8	5.752	1	25658000	+		30416	18957	21944	22110	29724	29724					0.07536253945750104
LGTTTRFRV	9	Unmodified	_LGTTTRFRV_					0	0	0			REV__nc|ENSG00000136758|Q96TA2-3|YME1L1	REV__nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	350.873336	1049.59818	-0.49925	-0.00017517	0.19992	7.0148E-05	-0.29932	-0.00010502	350.8733625576716	18.851	0.20984	19.454	19.423	19.633	0.60308	0.10581	0.00038897	NaN	10.8	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25658000	+		30417	18957	21944	22110							0.07536253945750104
LGTYLYSFVRL	11	Unmodified	_LGTYLYSFVRL_					0	0	0		nc|ENSG00000090861|P49588-2|AARS1	nc|ENSG00000090861|P49588-2|AARS1	nc|ENSG00000090861|P49588-2|AARS1	MSMS	A375_MHC_IP_R1	1	444.66351318359375	3	444.583451	1330.72852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.189	1	36.189	35.689	36.689	0								0	0	0	0.16297	1	12093	12093		1.3296	0	1				30418	14498	21945	22111	29725	29725					0.07638805154056172
LGVALGLFCE	10	Unmodified	_LGVALGLFCE_					0	0	0			REV__FBN1|p.P641L|1|0.23|ENSG00000166147|chr15:48505063-48505063|G/A|missense_variant	REV__FBN1|p.P641L|1|0.23|ENSG00000166147|chr15:48505063-48505063|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	511.18634033203125	2	511.272978	1020.5314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.562	1	39.562	39.062	40.062	0								0	0	0	0.15158	1	13534	13534		14.838	1.3304	1		+		30419	26618	21946	22112	29726	29726					0.021958823396289517
LGVGRGTYEK	10	Unmodified	_LGVGRGTYEK_					0	0	0			REV__ENST00000576380.5_1_17:79813102-79817234:-|nuORF	REV__ENST00000576380.5_1_17:79813102-79817234:-|nuORF	MSMS	A375_MHC_IP_R1	1	540.204833984375	2	540.29583	1078.57711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.87	1	134.87	134.37	135.37	0								0	0	0	0.15465	1	52008	52008		5.7319	0.97584	1		+		30420	26313	21947	22113	29727	29727					0.040962438462202044
LGVHVSSY	8	Unmodified	_LGVHVSSY_					0	0	0			REV__ENST00000309982.9_2_8:104240988-104241114:+|nuORF	REV__ENST00000309982.9_2_8:104240988-104241114:+|nuORF	MSMS	A375_MHC_IP_R1	1	431.2532043457031	2	431.226885	860.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.347	1	33.347	32.847	33.847	0								0	0	0	0.16876	1	10877	10877		14.582	4.3983	1		+		30421	23494	21948	22114	29728	29728					0.0034154031761772785
LGVHYVLV	8	Unmodified	_LGVHYVLV_					0	0	0		ENST00000532998.5_1_17:8077831-8077879:-|nuORF;ENST00000437139.6_2_17:8077572-8077879:-|nuORF	ENST00000532998.5_1_17:8077831-8077879:-|nuORF	ENST00000532998.5_1_17:8077831-8077879:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	450.65838623046875	2	450.271096	898.527639	-0.15789	-7.1094E-05	-3.6236	-0.0016316	-3.7815	-0.0017027	450.269647457399	47.732	0.86421	48.493	47.919	48.783	0.76128					21	16	2	0	0	0	0.72845	1	17977	17977		17.087	7.7391	1	4029100			30422	11936	21949	22115	29729	29729					0.07431580628087886
LGVIRDFSI	9	Unmodified	_LGVIRDFSI_					0	0	0		ZBTB7C|p.E228K|1|0.39|ENSG00000184828|chr18:48040426-48040426|C/T|missense_variant;ENSG00000184828|ENST00000590800|ZBTB7C	ZBTB7C|p.E228K|1|0.39|ENSG00000184828|chr18:48040426-48040426|C/T|missense_variant	ZBTB7C|p.E228K|1|0.39|ENSG00000184828|chr18:48040426-48040426|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	510.4510498046875	2	510.297842	1018.58113	-1.1529	-0.00058834	-0.19567	-9.9852E-05	-1.3486	-0.0006882	510.2978878277673	59.376	0.40282	60.123	59.896	60.299	0.74714					13	7	2	0	0	0	0.74651	1	22400	22400		4.756	0	1	2109300			30423	8611	21950	22116	29730	29730					0.07258333339939327
LGVKIVYY	8	Unmodified	_LGVKIVYY_					0	0	0		PROM1|p.L100V|1|0.22|ENSG00000007062|chr4:16035740-16035740|G/C|missense_variant	PROM1|p.L100V|1|0.22|ENSG00000007062|chr4:16035740-16035740|G/C|missense_variant	PROM1|p.L100V|1|0.22|ENSG00000007062|chr4:16035740-16035740|G/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	477.32037353515625	2	477.786579	953.558604	-0.59812	-0.00028578	-2.5786	-0.001232	-3.1767	-0.0015178	477.78460433934805	53.156	0.30354	53.156	53.048	53.352	0					8	5	2	0	0	0	0.97144	1	18910	18910		5.2307	0	1	945410			30424	15233	21951	22117	29731	29731					0.07996733942320589
LGVLINGTLAS	11	Unmodified	_LGVLINGTLAS_					0	0	0		nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L	nc|ENSG00000144893|Q86YW9-4|MED12L	nc|ENSG00000144893|Q86YW9-4|MED12L	MULTI-SECPEP	A375_MHC_IP_R2	2	529.7164306640625	2	529.316232	1056.61791	-0.43007	-0.00022764	0.77175	0.0004085	0.34168	0.00018086	529.3166184740637	46.523	0.35769	47.288	47.058	47.416	0.76519					11	6	2	0	0	0	0.99018	1	17454	17454		4.5289	2.6846	1	3264400			30425	5526	21952	22118	29732	29732					0.09186585165844008
LGVLLSLWIEP	11	Unmodified	_LGVLLSLWIEP_					0	0	0		ENST00000504719.6_1_8:128867450-128867498:+|nuORF	ENST00000504719.6_1_8:128867450-128867498:+|nuORF	ENST00000504719.6_1_8:128867450-128867498:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	620.573974609375	2	620.371007	1238.72746	-0.79051	-0.00049041	0.94504	0.00058627	0.15453	9.5866E-05	620.8716444208696	106.99	0.1517	107.75	107.64	107.8	0.75687					4	2	2	0	0	0	0.99227	1	40435	40435		1.1933	0	1	997240			30426	12825	21953	22119	29733	29733					0.11764590785173823
LGVLRRPL	8	Unmodified	_LGVLRRPL_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2	REV__nc|ENSG00000117305|P35914-3|HMGCL	REV__nc|ENSG00000117305|P35914-3|HMGCL	MULTI-SECPEP	A375_MHC_IP_R2	2	462.7108154296875	2	462.311087	922.60762	-0.74857	-0.00034607	-0.10009	-4.6275E-05	-0.84867	-0.00039235	462.3109943493691	51.551	0.30486	52.304	52.169	52.473	0.75225					11	5	3	0	0	0	0.972	1	19436	19436		2.3027	0	1	2666700			30427	18001	21954	22120	29734	29734					0.14322067021930707
LGVMILAG	8	Unmodified	_LGVMILAG_					0	0	0			REV__ENST00000476883.5_1_1:153925810-153930559:-|nuORF	REV__ENST00000476883.5_1_1:153925810-153930559:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	774.2197265625	1	773.458973	772.451696	-1.0142	-0.00078446	2.378	0.0018393	1.3638	0.0010548	773.4608088722686	123.89	0.20409	123.89	123.74	123.94	0					6	3	2	0	0	0	0.972	1	46337	46337		6.3541	0	1	11138000	+		30428	25189	21955	22121	29735	29735					0.05636860456297654
LGVPHGAIPGS	11	Unmodified	_LGVPHGAIPGS_					0	0	0		nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;ENSG00000160111|ENST00000443236|CPAMD8	nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	MULTI-SECPEP	A375_MHC_IP_R1	1	502.6640625	2	502.779816	1003.54508	0.13314	6.694E-05	-1.1798	-0.00059317	-1.0466	-0.00052623	502.7791786389684	49.26	0.45468	49.26	48.933	49.387	0					12	8	2	0	0	0	0.95991	1	17314	17314		13.042	1.4022	1	1191200			30429	6397	21956	22122	29736	29736					0.04344876163099798
LGVRFAEG	8	Unmodified	_LGVRFAEG_					0	0	0			REV__ENST00000249356.3_1_7:108210198-108210453:+|nuORF	REV__ENST00000249356.3_1_7:108210198-108210453:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	424.6275939941406	2	424.734877	847.455202	-0.34784	-0.00014774	0.51147	0.00021724	0.16363	6.9497E-05	424.7353634804382	36.31	0.96732	37.081	36.443	37.41	0.7709					25	18	2	0	0	0	0.96266	1	13348	13348		7.2892	2.5332	1	2321800	+		30430	23120	21957	22123	29737	29737					0.02537246554527428
LGVRFAEG	8	Unmodified	_LGVRFAEG_					0	0	0			REV__ENST00000249356.3_1_7:108210198-108210453:+|nuORF	REV__ENST00000249356.3_1_7:108210198-108210453:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	424.734877	847.455202	-0.0064122	-2.7235E-06	0.40312	0.00017122	0.3967	0.00016849	424.7348931266684	37.211	0.40814	37.211	37.045	37.454	0	0.065182	-1.6995E-05	NaN	3.9444	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1632900	+		30431	23120	21957	22123							0.02537246554527428
LGVSIGALL	9	Unmodified	_LGVSIGALL_					0	0	0			REV__ENST00000486155.1_1_6:35928714-35992326:-|nuORF	REV__ENST00000486155.1_1_6:35928714-35992326:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	422.1709899902344	2	421.770929	841.527304	0.36182	0.0001526	0.43069	0.00018165	0.79251	0.00033426	421.77084058280684	69.958	0.504	69.958	69.681	70.185	0					13	9	2	0	0	0	0.36419	1	25411	25411		18.135	5.6034	1	1291600	+		30432	17707	21958	22124	29738	29738					0.10020160908231901
LGVTKIASKV	10	Unmodified	_LGVTKIASKV_					0	0	0			REV__ENST00000533802.5_2_11:43855633-43876795:+|nuORF	REV__ENST00000533802.5_2_11:43855633-43876795:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	508.1817932128906	2	508.329142	1014.64373	-0.93203	-0.00047378	0.1602	8.1432E-05	-0.77183	-0.00039234	508.32910258967604	26.898	0.35936	27.558	27.414	27.773	0.65992					10	6	2	0	0	0	0.90853	1	9142	9142		15.847	0	1	1759700	+		30433	19657	21959	22125	29739	29739					0.1369947940812608
LGVVEMDPL	9	Unmodified	_LGVVEMDPL_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MSMS	A375_MHC_IP_R2	2	486.6792297363281	2	486.757161	971.499769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.169	1	48.928	48.428	49.428	0.75956								0	0	0	0.1521	1	18082	18082		18.135	0	1		+		30434	22253	21960	22126	29740	29740					0.012878895856829331
LGVWEARGY	9	Unmodified	_LGVWEARGY_					0	0	0		nc|ENSG00000178026|Q2VPJ9-2|LRRC75B	nc|ENSG00000178026|Q2VPJ9-2|LRRC75B	nc|ENSG00000178026|Q2VPJ9-2|LRRC75B	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1570434570312	2	525.771991	1049.52943	-0.73706	-0.00038752	-0.078462	-4.1253E-05	-0.81552	-0.00042878	525.7712901184732	51.705	0.3567	52.457	52.321	52.677	0.75225					13	6	3	0	0	0	0.74651	1	19550	19550		8.5933	0	1	1153700			30435	14787	21961	22127	29741	29741					0.006645896460440781
LGVWQITGL	9	Unmodified	_LGVWQITGL_					0	0	0		ENST00000403729.6_1_4:80992740-80994184:-|nuORF	ENST00000403729.6_1_4:80992740-80994184:-|nuORF	ENST00000403729.6_1_4:80992740-80994184:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	493.68707275390625	2	493.78711	985.559667	0.056884	2.8089E-05	0.59168	0.00029216	0.64856	0.00032025	493.787394524541	69.261	2.4414	69.261	68.666	71.108	0					149	47	5	0	0	0	0.60623	1	24995	24995		14.582	1.0738	1	66895000			30436	11576	21962	22128	29742	29742					0.06630948311226348
LGWDLVKAR	9	Unmodified	_LGWDLVKAR_					0	0	0			REV__nc|ENSG00000105655|Q9NPH2-2|ISYNA1	REV__nc|ENSG00000105655|Q9NPH2-2|ISYNA1	MULTI-SECPEP	A375_MHC_IP_R1	1	352.6207580566406	3	353.209948	1056.60801	-0.033099	-1.1691E-05	0.66279	0.0002341	0.62969	0.00022241	353.5444888332442	31.563	0.7605	31.563	31.109	31.87	0					28	14	3	0	0	0	0.71541	1	10125	10125		4.5289	0	1	3889700	+		30437	17400	21963	22129	29743	29743					0.081974419511198
LGWGLLEV	8	Unmodified	_LGWGLLEV_					0	0	0		ENST00000527227.1_1_11:71191827-71192067:+|nuORF	ENST00000527227.1_1_11:71191827-71192067:+|nuORF	ENST00000527227.1_1_11:71191827-71192067:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	444.1550598144531	2	443.755278	885.496004	0.01742	7.7302E-06	0.90484	0.00040153	0.92226	0.00040926	443.7553404908891	81.905	0.45538	81.905	81.607	82.062	0					15	8	2	0	0	0	0.88799	1	29943	29943		20.871	0	1	1571700			30438	13095	21964	22130	29744	29744					0.04867587874127821
LGWGLLEV	8	Unmodified	_LGWGLLEV_					0	0	0		ENST00000527227.1_1_11:71191827-71192067:+|nuORF	ENST00000527227.1_1_11:71191827-71192067:+|nuORF	ENST00000527227.1_1_11:71191827-71192067:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	444.1553039550781	2	443.755278	885.496004	-0.10106	-4.4848E-05	0.90514	0.00040166	0.80407	0.00035681	443.75523948424984	83.515	0.56056	83.515	83.175	83.736	0					17	10	2	0	0	0	0.68446	1	30565	30565		36.466	8.2929	1	1732000			30439	13095	21964	22130	29745	29745					0.04867587874127821
LGWGLLEV	8	Unmodified	_LGWGLLEV_					0	0	0		ENST00000527227.1_1_11:71191827-71192067:+|nuORF	ENST00000527227.1_1_11:71191827-71192067:+|nuORF	ENST00000527227.1_1_11:71191827-71192067:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	444.155029296875	2	443.755278	885.496004	-0.38993	-0.00017303	0.32536	0.00014438	-0.064564	-2.8651E-05	443.7551862780369	82.424	0.50539	83.167	82.992	83.497	0.74293					20	9	3	0	0	0	0.88799	1	31334	31334		20.871	0	1	2032200			30440	13095	21964	22130	29746	29746					0.04867587874127821
LGWGSPFDL	9	Unmodified	_LGWGSPFDL_					0	0	0			REV__ENSG00000136274|ENST00000490531|NACAD	REV__ENSG00000136274|ENST00000490531|NACAD	MSMS	A375_MHC_IP_R1	1	496.30731201171875	2	496.247818	990.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.473	1	19.473	18.973	19.973	0								0	0	0	0.15486	1	4842	4842		7.9102	0	1		+		30441	18928	21965	22131	29747	29747					-0.014539039938654241
LGWKFLNLM	9	Unmodified	_LGWKFLNLM_					0	0	0		ENSG00000268235|ENST00000622971|TCP11X1;ENSG00000215029|ENST00000642911|TCP11X2	ENSG00000268235|ENST00000622971|TCP11X1	ENSG00000268235|ENST00000622971|TCP11X1	MSMS	A375_MHC_IP_R1	1	561.2159423828125	2	561.312438	1120.61032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.219	1	82.219	81.719	82.719	0								0	0	0	0.15486	1	30061	30061		8.5933	0	1				30442	9636	21966	22132	29748	29748					0.054841543645579804
LGWLNEISSR	10	Unmodified	_LGWLNEISSR_					0	0	0			REV__TRIM37|p.Q791Lfs*6|1|0.17|ENSG00000108395|chr17:59017310-59017311|-/GACA|frameshift_variant	REV__TRIM37|p.Q791Lfs*6|1|0.17|ENSG00000108395|chr17:59017310-59017311|-/GACA|frameshift_variant	MSMS	A375_MHC_IP_R2	2	587.72705078125	2	587.814387	1173.61422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.261	1	100.02	99.521	100.52	0.75977								0	0	0	0.15435	1	37654	37654		6.7232	0.51738	1		+		30443	17529	21967	22133	29749	29749					0.03435915391992239
LGWQIDDSV	9	Unmodified	_LGWQIDDSV_					0	0	0		ENSG00000119402|ENST00000608872|FBXW2;nc|ENSG00000119402|Q9UKT8-2|FBXW2;FBXW2|p.D115N|1|0.4|ENSG00000119402|chr9:120787916-120787916|C/T|missense_variant	ENSG00000119402|ENST00000608872|FBXW2	ENSG00000119402|ENST00000608872|FBXW2	MULTI-SECPEP	A375_MHC_IP_R2	2	516.2110595703125	2	516.753464	1031.49238	-1.0071	-0.0005204	0.25096	0.00012968	-0.7561	-0.00039072	516.7535123627052	49.904	0.56052	50.658	50.394	50.955	0.75406					19	10	2	0	0	0	0.74651	1	18694	18694		0.52476	0	1	5313100			30444	3590	21968	22134	29750	29750					-0.02211126690394849
LGWSRHRTL	9	Unmodified	_LGWSRHRTL_					0	0	0			REV__ENSG00000181450|ENST00000343776|ZNF678	REV__ENSG00000181450|ENST00000343776|ZNF678	MULTI-SECPEP	A375_MHC_IP_R2	2	563.716552734375	2	563.317432	1124.62031	-0.43579	-0.00024549	-1.1131	-0.000627	-1.5488	-0.00087249	563.3168239699842	89.839	0.41063	90.571	90.391	90.801	0.7318					12	7	2	0	0	0	0.67483	1	34257	34257		10.074	0	1	2207900	+		30445	21651	21969	22135	29751	29751					0.06298478414191777
LGWTMLVN	8	Unmodified	_LGWTMLVN_					0	0	0		nc|ENSG00000116688|O95140-2|MFN2;ENSG00000116688|ENST00000235329|MFN2	nc|ENSG00000116688|O95140-2|MFN2	nc|ENSG00000116688|O95140-2|MFN2	MULTI-MSMS	A375_MHC_IP_R1	1	468.18975830078125	2	467.246763	932.478974	-0.39437	-0.00018427	-0.26751	-0.000125	-0.66188	-0.00030926	467.24678639950014	94.916	2.1853	94.916	94.394	96.58	0					92	42	4	0	0	0	0.77123	1	35033	35033		14.582	0	1	5268500			30446	3418	21970	22136	29752	29752					0.010033439966832702
LGWVLGVG	8	Unmodified	_LGWVLGVG_					0	0	0		ENST00000301068.10_1_12:49458528-49458861:-|nuORF	ENST00000301068.10_1_12:49458528-49458861:-|nuORF	ENST00000301068.10_1_12:49458528-49458861:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	401.1366882324219	2	400.736889	799.459225	0.065086	2.6082E-05	0.1856	7.4375E-05	0.25068	0.00010046	400.7370149594603	98.806	0.40667	99.566	99.301	99.708	0.75977					11	7	2	0	0	0	0.972	1	37524	37524		0.79363	0	1	1698300			30447	10541	21971	22137	29753	29753					0.051473360482418684
LGWYCFRRYRL	11	Unmodified	_LGWYCFRRYRL_					0	0	0		ENST00000593099.5_1_17:33325156-33325826:+|nuORF	ENST00000593099.5_1_17:33325156-33325826:+|nuORF	ENST00000593099.5_1_17:33325156-33325826:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	766.8536987304688	2	766.900805	1531.78706	-0.76352	-0.00058555	-2.2861	-0.0017532	-3.0496	-0.0023387	767.3993514326648	136.2	0.20284	136.31	136.2	136.4	0.11133					5	3	2	0	0	0	0.73795	1	53499	53499		1.3295	0.13619	1	885340			30448	13822	21972	22138	29754	29754					0.04243583247580318
LGYAVIAAF	9	Unmodified	_LGYAVIAAF_					0	0	0			REV__ENST00000470543.1_1_3:42826765-42845976:-|nuORF	REV__ENST00000470543.1_1_3:42826765-42845976:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	462.1893615722656	2	462.763104	923.511654	-0.2308	-0.0001068	0.033104	1.5319E-05	-0.19769	-9.1485E-05	462.76304054160977	74.952	0.91045	74.952	74.653	75.564	0					23	17	2	0	0	0	0.64653	1	27479	27479		9.3474	9.3474	1	1814000	+		30449	21635	21973	22139	29755	29755					0.04683874391173504
LGYGGGYG	8	Unmodified	_LGYGGGYG_					0	0	0		ENSG00000186977|ENST00000334151|KRTAP19-5;CON__Q3LI72	ENSG00000186977|ENST00000334151|KRTAP19-5	ENSG00000186977|ENST00000334151|KRTAP19-5	MULTI-SECPEP	A375_MHC_IP_R1	1	743.67431640625	1	743.335881	742.328604	-0.49474	-0.00036776	-0.085596	-6.3627E-05	-0.58034	-0.00043138	743.3355567369633	128.67	0.30396	128.67	128.48	128.79	0					7	5	2	0	0	0	0.972	1	49420	49420		0.79363	0	1	6766200		+	30450	617	21974	22140	29756	29756					-0.05286679670621197
LGYHLVAWL	9	Unmodified	_LGYHLVAWL_					0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	A375_MHC_IP_R2	2	536.6124267578125	2	536.302927	1070.5913	-0.77415	-0.00041518	-0.028069	-1.5053E-05	-0.80222	-0.00043023	536.3028202544604	69.368	1.5225	70.102	69.018	70.54	0.73421					47	29	3	0	0	0	0.75164	1	26119	26119		9.3474	1.4373	1	1432700	+		30451	21568	21975	22141	29757	29757					0.05882941065169689
LGYLYRKFW	9	Unmodified	_LGYLYRKFW_					0	0	0		ENSG00000249715|ENST00000624922|FER1L5;nc|ENSG00000249715|A0AVI2-4|FER1L5;nc|ENSG00000249715|A0AVI2-2|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	MULTI-MSMS	A375_MHC_IP_R2	2	415.9629211425781	3	415.897481	1244.67061	0.14356	5.9705E-05	-0.97953	-0.00040739	-0.83598	-0.00034768	415.8971617785717	44.088	0.55745	44.858	44.631	45.188	0.7691					19	10	3	0	0	0	0.57432	1	16414	16414		16.149	7.4037	1	4471900			30452	9841	21976	22142	29758	29758					0.058065880193225894
LGYRQALQL	9	Unmodified	_LGYRQALQL_					0	0	0		ENST00000281543.5_1_4:44680662-44682465:+|nuORF	ENST00000281543.5_1_4:44680662-44682465:+|nuORF	ENST00000281543.5_1_4:44680662-44682465:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	531.708251953125	2	531.308741	1060.60293	-0.70795	-0.00037614	-0.66031	-0.00035083	-1.3683	-0.00072697	531.3083539412266	45.287	0.60612	46.052	45.846	46.453	0.76519					23	11	3	0	0	0	0.16945	1	16936	16936		43.858	0	1	2991500			30453	10428	21977	22143	29759	29759					0.07505138088527019
LGYSKCVLIG	10	Unmodified	_LGYSKCVLIG_					0	0	0		ENSG00000172031|ENST00000370383|EPHX4	ENSG00000172031|ENST00000370383|EPHX4	ENSG00000172031|ENST00000370383|EPHX4	MULTI-SECPEP	A375_MHC_IP_R1	1	351.9318542480469	3	351.531811	1051.5736	-0.3862	-0.00013576	0.55189	0.00019401	0.16569	5.8245E-05	351.5318633369795	41.7	0.66244	41.7	41.47	42.132	0					19	12	3	0	0	0	0.9269	1	14425	14425		6.1918	6.1918	1	3412900			30454	7672	21978	22144	29760	29760					0.049878577480058084
LHAIRCNHL	9	Unmodified	_LHAIRCNHL_					0	0	0			REV__nc|ENSG00000038382|O75962-2|TRIO	REV__nc|ENSG00000038382|O75962-2|TRIO	MULTI-SECPEP	A375_MHC_IP_R1	1	358.9257507324219	3	359.530915	1075.57092	-0.22334	-8.0299E-05	3.2467	0.0011673	3.0234	0.001087	359.86581471923006	30.326	0.40301	30.326	30.2	30.603	0					11	7	2	0	0	0	0.74651	1	9681	9681		5.2969	2.7984	1	1495300	+		30455	16328	21979	22145	29761	29761					0.03615447133711314
LHAKRLINVF	10	Unmodified	_LHAKRLINVF_					0	0	0			REV__ENST00000526594.1_1_11:102033229-102056975:+|nuORF	REV__ENST00000526594.1_1_11:102033229-102056975:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	605.2517700195312	2	605.874582	1209.73461	-0.54257	-0.00032873	0.64403	0.0003902	0.10145	6.1468E-05	605.8747190742359	85.642	0.45702	85.642	85.362	85.819	0					10	8	2	0	0	0	0.93615	1	31370	31370		3.9444	1.8584	1	1074700	+		30456	25776	21980	22146	29762	29762					0.13813368176261065
LHALTAQLLP	10	Unmodified	_LHALTAQLLP_					0	0	0			REV__ENSG00000185974|ENST00000335678|GRK1	REV__ENSG00000185974|ENST00000335678|GRK1	MULTI-SECPEP	A375_MHC_IP_R2	2	359.2498779296875	3	359.553603	1075.63898	-0.47458	-0.00017064	-0.44379	-0.00015957	-0.91837	-0.0003302	359.55347740803313	58.055	0.45477	58.804	58.629	59.083	0.74894					12	8	2	0	0	0	0.91909	1	21927	21927		5.4027	0	1	954470	+		30457	21937	21981	22147	29763	29763					0.1041859526535518
LHAMFIGG	8	Unmodified	_LHAMFIGG_					0	0	0		GPR50|p.S90F|1|0.54|ENSG00000102195|chrX:151179852-151179852|C/T|missense_variant	GPR50|p.S90F|1|0.54|ENSG00000102195|chrX:151179852-151179852|C/T|missense_variant	GPR50|p.S90F|1|0.54|ENSG00000102195|chrX:151179852-151179852|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	423.62060546875	2	423.220549	844.426544	-0.40665	-0.0001721	0.62819	0.00026586	0.22154	9.376E-05	423.22073970042055	140.83	0.56873	140.83	140.54	141.11	0					21	10	3	0	0	0	0.77686	1	54078	54078		6.3541	0	1	3795100			30458	14069	21982	22148	29764	29764					-0.0018919434625104259
LHAMFIGG	8	Unmodified	_LHAMFIGG_					0	0	0		GPR50|p.S90F|1|0.54|ENSG00000102195|chrX:151179852-151179852|C/T|missense_variant	GPR50|p.S90F|1|0.54|ENSG00000102195|chrX:151179852-151179852|C/T|missense_variant	GPR50|p.S90F|1|0.54|ENSG00000102195|chrX:151179852-151179852|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	423.220549	844.426544	-0.40665	-0.0001721	0.62819	0.00026586	0.22154	9.376E-05	423.22073970042055	140.83	0.56873	140.83	140.54	141.11	0	-0.052125	-3.8749E-05	NaN	6.3541	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3795100			30459	14069	21982	22148							-0.0018919434625104259
LHAMFIGG	8	Unmodified	_LHAMFIGG_					0	0	0		GPR50|p.S90F|1|0.54|ENSG00000102195|chrX:151179852-151179852|C/T|missense_variant	GPR50|p.S90F|1|0.54|ENSG00000102195|chrX:151179852-151179852|C/T|missense_variant	GPR50|p.S90F|1|0.54|ENSG00000102195|chrX:151179852-151179852|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	423.220549	844.426544	0.050648	2.1435E-05	0.73126	0.00030948	0.7819	0.00033092	423.22077713479933	140.89	0.61771	140.94	140.65	141.27	0.04216	0.052125	4.8488E-05	NaN	6.3541	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3271200			30460	14069	21982	22148							-0.0018919434625104259
LHAQDRLLKR	10	Unmodified	_LHAQDRLLKR_					0	0	0			REV__ELF4|p.E568K|1|0.66|ENSG00000102034|chrX:130067011-130067011|C/T|missense_variant	REV__ELF4|p.E568K|1|0.66|ENSG00000102034|chrX:130067011-130067011|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	1250.1480712890625	1	1249.74876	1248.74149	0.44014	0.00055006	-0.15977	-0.00019967	0.28037	0.00035039	1249.7482334697547	149.42	1.7645	149.44	148.11	149.88	0.01825					131	54	3	0	0	0	0.72645	1	57903	57903		0.45834	0	1	491650	+		30461	16074	21983	22149	29765	29765					0.127066810568067
LHASFSSL	8	Unmodified	_LHASFSSL_					0	0	0			REV__tr|U7T3C2|U7T3C2_FUSNUEndonucleaseMutS2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutS2PE=3SV=1	REV__tr|U7T3C2|U7T3C2_FUSNUEndonucleaseMutS2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutS2PE=3SV=1	MSMS	A375_MHC_IP_R2	2	431.171142578125	2	431.226885	860.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.04	1	73.775	73.275	74.275	0.73541								0	0	0	0.16876	1	27725	27725		14.582	3.4672	1		+		30462	28767	21984	22150	29766	29766					0.0034154031761772785
LHCDCGGG	8	Unmodified	_LHCDCGGG_					0	0	0		nc|ENSG00000162591|O75095-2|MEGF6;ENSG00000162591|ENST00000356575|MEGF6	nc|ENSG00000162591|O75095-2|MEGF6	nc|ENSG00000162591|O75095-2|MEGF6	MSMS	A375_MHC_IP_R1	1	381.10845947265625	2	381.138898	760.263244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.318	1	19.318	18.818	19.818	0								0	0	0	0.16876	1	4691	4691		0.79363	0	1				30463	6553	21985	22151	29767	29767					-0.12647740459613033
LHCILWGTNVY	11	Unmodified	_LHCILWGTNVY_					0	0	0		ENST00000489112.5_1_3:98475311-98491765:+|nuORF;ENST00000490684.1_1_3:98482217-98491765:+|nuORF;chr3:98763431-98768430|430|18.67|0.76|4.61|+|ENST00000492254|ST3GAL6,ST3GAL6;ENSG00000064225|ENST00000483910|ST3GAL6	ENST00000489112.5_1_3:98475311-98491765:+|nuORF	ENST00000489112.5_1_3:98475311-98491765:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	660.23486328125	2	659.834265	1317.65398	-0.37267	-0.0002459	1.4686	0.00096902	1.0959	0.00072312	659.8354833492442	54.389	0.45558	54.389	54.163	54.619	0					20	8	4	0	0	0	0.72649	1	19430	19430		12.241	4.0851	1	4750800			30464	12629	21986	22152	29768	29768					0.007857190710637951
LHDARKVAAQL	11	Unmodified	_LHDARKVAAQL_					0	0	0			REV__ENST00000570817.5_1_17:79163571-79163706:-|nuORF	REV__ENST00000570817.5_1_17:79163571-79163706:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	611.7262573242188	2	611.356754	1220.69895	-0.35405	-0.00021645	-1.0625	-0.00064958	-1.4166	-0.00086604	611.3559833441789	128.91	2.0818	128.91	127.52	129.6	0					162	40	6	0	0	0	0.99676	1	49223	49223		1.1933	0	1	417870000	+		30465	26279	21987	22153	29769	29769					0.09743285928584555
LHDATWVEP	9	Unmodified	_LHDATWVEP_					0	0	0			REV__ENSG00000196693|ENST00000359467|ZNF33B	REV__ENSG00000196693|ENST00000359467|ZNF33B	MULTI-MSMS	A375_MHC_IP_R2	2	534.6951904296875	2	534.261456	1066.50836	-0.65659	-0.00035079	-0.26675	-0.00014251	-0.92334	-0.0004933	535.2653724571986	43.34	0.60701	44.113	43.876	44.483	0.7724					27	11	4	0	0	0	0.63811	1	16083	16083		12.532	0	1	3271000	+		30466	22142	21988	22154	29770	29770					-0.022234204534925084
LHDFLQLRQ	9	Unmodified	_LHDFLQLRQ_					0	0	0		RNF207|p.L517F|1|0.16|ENSG00000158286|chr1:6213080-6213080|C/T|missense_variant	RNF207|p.L517F|1|0.16|ENSG00000158286|chr1:6213080-6213080|C/T|missense_variant	RNF207|p.L517F|1|0.16|ENSG00000158286|chr1:6213080-6213080|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	585.31005859375	2	585.324922	1168.63529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.08	1	142.08	141.58	142.58	0								0	0	0	0.15486	1	54518	54518		4.3292	0.38484	1				30467	29086	21989	22155	29771	29771					0.05771925491512775
LHDVEHSDTGT	11	Unmodified	_LHDVEHSDTGT_					0	0	0			REV__nc|ENSG00000136828|Q5JS13-2|RALGPS1	REV__nc|ENSG00000136828|Q5JS13-2|RALGPS1	MSMS	A375_MHC_IP_R1	1	605.7295532226562	2	605.770374	1209.52619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.348	1	85.348	84.848	85.848	0								0	0	0	0.16191	1	31277	31277		8.7454	2.0222	1		+		30468	27246	21990	22156	29772	29772					-0.07018749989288153
LHDVEHSDTGT	11	Unmodified	_LHDVEHSDTGT_					0	0	0			REV__nc|ENSG00000136828|Q5JS13-2|RALGPS1	REV__nc|ENSG00000136828|Q5JS13-2|RALGPS1	MSMS	A375_MHC_IP_R2	2	605.7293701171875	2	605.770374	1209.52619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.424	1	85.16	84.66	85.66	0.73601								0	0	0	0.16108	1	32092	32092		13.042	1.4022	1		+		30469	27246	21990	22156	29773	29773					-0.07018749989288153
LHEQEERLR	9	Unmodified	_LHEQEERLR_					0	0	0		ENST00000515341.6_1_15:85055093-85055729:-|nuORF;ENSG00000184206|ENST00000510439|GOLGA6L4	ENST00000515341.6_1_15:85055093-85055729:-|nuORF	ENST00000515341.6_1_15:85055093-85055729:-|nuORF	MSMS	A375_MHC_IP_R1	1	403.9468994140625	3	403.882671	1208.62618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.752	1	32.752	32.252	33.252	0								0	0	0	0.15486	1	10611	10611		5.7834	1.0675	1				30470	8560	21991	22157	29774	29774					0.030215321351761304
LHERIKSEP	9	Unmodified	_LHERIKSEP_					0	0	0			REV__ENST00000422599.1_1_20:48573579-48573780:+|nuORF	REV__ENST00000422599.1_1_20:48573579-48573780:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	370.59259033203125	3	370.208495	1107.60366	-0.27784	-0.00010286	-0.15982	-5.9166E-05	-0.43766	-0.00016203	370.20843440578466	28.643	0.60107	29.341	29.08	29.681	0.69872					22	11	3	0	0	0	0.61998	1	9827	9827		9.544	1.5986	1	87119000	+		30471	24606	21992	22158	29775	29775					0.0541593273756007
LHETYQQVPS	10	Unmodified	_LHETYQQVPS_					0	0	0			REV__FZR1|p.G376Rfs*4|1|0.37|ENSG00000105325|chr19:3532526-3532527|-/G|frameshift_variant	REV__FZR1|p.G376Rfs*4|1|0.37|ENSG00000105325|chr19:3532526-3532527|-/G|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	601.6959838867188	2	601.296027	1200.5775	-0.39265	-0.0002361	-1.1516	-0.00069246	-1.5443	-0.00092856	601.2961476384636	64.147	3.106	64.147	62.966	66.072	0					148	60	3	0	0	0	0.33265	1	23427	23427		38.176	1.6694	1	9172200	+		30472	17372	21993	22159	29776	29776					-0.014763812245746522
LHFFPHWLLYC	11	Unmodified	_LHFFPHWLLYC_					0	0	0		ENSG00000180998|ENST00000321662|GPR137C	ENSG00000180998|ENST00000321662|GPR137C	ENSG00000180998|ENST00000321662|GPR137C	MSMS	A375_MHC_IP_R1	1	492.47784423828125	3	492.581276	1474.722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.851	1	51.851	51.351	52.351	0								0	0	0	0.1629	1	18418	18418		1.4551	0	1				30473	8328	21994	22160	29777	29777					0.0036258872173675627
LHFHVRHCK	9	Unmodified	_LHFHVRHCK_					0	0	0			REV__ENST00000493262.1_1_7:139741422-139754495:-|nuORF	REV__ENST00000493262.1_1_7:139741422-139754495:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	392.6108703613281	3	392.878427	1175.61345	-0.11956	-4.6972E-05	1.4028	0.00055113	1.2832	0.00050416	393.21325001520984	44.291	0.65793	45.06	44.631	45.289	0.7691					23	12	3	0	0	0	0.78351	1	16400	16400		5.2969	0	1	2480100	+		30474	16439	21995	22161	29778	29778					0.03266842261950842
LHFKMLNSQ	9	Unmodified	_LHFKMLNSQ_					0	0	0			REV__ENST00000342992.10_3_2:179439628-179439709:-|nuORF	REV__ENST00000342992.10_3_2:179439628-179439709:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	373.9499206542969	3	373.198943	1116.575	0.17309	6.4598E-05	1.2384	0.00046217	1.4115	0.00052677	373.1993230981598	47.018	0.46051	47.018	46.699	47.159	0					12	8	2	0	0	0	0.78753	1	16534	16534		4.897	3.2444	1	747660	+		30475	23744	21996	22162	29779	29779					0.021374918367882856
LHFLEPWSG	9	Unmodified	_LHFLEPWSG_					0	0	0		ENST00000610187.1_1_9:136997441-137000810:-|nuORF	ENST00000610187.1_1_9:136997441-137000810:-|nuORF	ENST00000610187.1_1_9:136997441-137000810:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	543.71044921875	2	543.274367	1084.53418	-0.26157	-0.00014211	-0.55054	-0.00029909	-0.81211	-0.0004412	543.274042865165	38.857	0.96886	38.857	38.371	39.34	0					44	18	3	0	0	0	0.46038	1	13101	13101		21.747	3.6003	1	14544000			30476	13942	21997	22163	29780	29780					-0.004705262112111086
LHFLPDELY	9	Unmodified	_LHFLPDELY_					0	0	0			REV__SEMA3E|p.H150Y|1|0.3|ENSG00000170381|chr7:83466490-83466490|G/A|missense_variant	REV__SEMA3E|p.H150Y|1|0.3|ENSG00000170381|chr7:83466490-83466490|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	383.26617431640625	3	382.865847	1145.57571	0.24096	9.2254E-05	0.63685	0.00024383	0.87781	0.00033608	382.8660600540528	27.453	0.50517	27.453	27.229	27.735	0					22	9	3	0	0	0	0.71541	1	8317	8317		11.495	11.495	1	11204000	+		30477	27939	21998	22164	29781	29781					0.008746097574885425
LHFLPDELY	9	Unmodified	_LHFLPDELY_					0	0	0			REV__SEMA3E|p.H150Y|1|0.3|ENSG00000170381|chr7:83466490-83466490|G/A|missense_variant	REV__SEMA3E|p.H150Y|1|0.3|ENSG00000170381|chr7:83466490-83466490|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	383.265869140625	3	382.865847	1145.57571	-0.38986	-0.00014926	0.78953	0.00030229	0.39968	0.00015302	382.866099949558	26.78	0.61314	27.44	27.212	27.825	0.65992					18	11	2	0	0	0	0.55818	1	9064	9064		11.495	1.1795	1	16911000	+		30478	27939	21998	22164	29782	29782					0.008746097574885425
LHFLQFNKEP	10	Unmodified	_LHFLQFNKEP_					0	0	0		ENST00000607746.1_1_3:107855918-107856014:+|nuORF	ENST00000607746.1_1_3:107855918-107856014:+|nuORF	ENST00000607746.1_1_3:107855918-107856014:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	425.29534912109375	3	424.896029	1271.66626	-0.13464	-5.7207E-05	-0.94799	-0.0004028	-1.0826	-0.00046	424.89566838983944	73.738	0.46088	74.473	74.243	74.704	0.73541					19	8	3	0	0	0	0.93733	1	28019	28019		8.4443	0	1	2430500			30479	13922	21999	22165	29783	29783					0.04129078805772224
LHFLQFNKEP	10	Unmodified	_LHFLQFNKEP_					0	0	0		ENST00000607746.1_1_3:107855918-107856014:+|nuORF	ENST00000607746.1_1_3:107855918-107856014:+|nuORF	ENST00000607746.1_1_3:107855918-107856014:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	424.896029	1271.66626	-0.11505	-4.8886E-05	-0.64043	-0.00027212	-0.75549	-0.000321	424.8957328339202	74.579	0.60954	74.579	74.247	74.857	0	0.052743	0.00016233	NaN	8.4443	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1887200			30480	13922	21999	22165							0.04129078805772224
LHFQDNQMY	9	Unmodified	_LHFQDNQMY_					0	0	0		ENST00000394518.6_1_15:86290787-86290904:+|nuORF	ENST00000394518.6_1_15:86290787-86290904:+|nuORF	ENST00000394518.6_1_15:86290787-86290904:+|nuORF	MSMS	A375_MHC_IP_R2	2	598.256103515625	2	598.263673	1194.51279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.01	1	136.12	135.62	136.62	0.11134								0	0	0	0.15486	1	53440	53440		4.3292	0.38484	1				30481	11452	22000	22166	29784	29784					-0.07668279302197334
LHFVEPEL	8	Unmodified	_LHFVEPEL_					0	0	0			REV__ENSG00000157184|ENST00000371486|CPT2	REV__ENSG00000157184|ENST00000371486|CPT2	MULTI-SECPEP	A375_MHC_IP_R2	2	492.19525146484375	2	492.263468	982.512382	-0.738	-0.00036329	-2.857	-0.0014064	-3.595	-0.0017697	492.26107829659406	51.622	0.45601	52.375	52.017	52.473	0.75225					13	8	3	0	0	0	0.96296	1	19394	19394		10.183	0	1	1429200	+		30482	20016	22001	22167	29785	29785					0.02042669040235978
LHGKEPQR	8	Unmodified	_LHGKEPQR_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	A375_MHC_IP_R2	2	482.6659240722656	2	482.769783	963.525013	-0.43253	-0.00020881	-2.5294	-0.0012211	-2.9619	-0.0014299	482.76789906817936	46.523	0.55915	47.288	47.058	47.617	0.76519					14	10	2	0	0	0	0.91495	1	17360	17360		24.674	0	1	1237800			30483	7983	22002	22168	29786	29786					0.041791252231291764
LHGKIGCL	8	Unmodified	_LHGKIGCL_					0	0	0		nc|ENSG00000140157|Q8N8Q9-2|NIPA2;ENSG00000140157|ENST00000337451|NIPA2	nc|ENSG00000140157|Q8N8Q9-2|NIPA2	nc|ENSG00000140157|Q8N8Q9-2|NIPA2	MSMS	A375_MHC_IP_R1	1	421.1435241699219	2	420.741648	839.468743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.533	1	71.533	71.033	72.033	0								0	0	0	0.16876	1	25996	25996		6.3541	0	1				30484	5128	22003	22169	29787	29787					0.04258781062117123
LHGKLNLA	8	Unmodified	_LHGKLNLA_					0	0	0		nc|ENSG00000168453|O43593-2|HR;ENSG00000168453|ENST00000381418|HR	nc|ENSG00000168453|O43593-2|HR	nc|ENSG00000168453|O43593-2|HR	MSMS	A375_MHC_IP_R1	1	433.28515625	2	433.266345	864.518136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.35	1	96.35	95.85	96.85	0								0	0	0	0.16876	1	35411	35411		6.3541	0	1				30485	7304	22004	22170	29788	29788					0.08045812342550107
LHGKSELPDA	10	Unmodified	_LHGKSELPDA_					0	0	0			REV__ENST00000528806.5_1_14:23598711-23607206:-|nuORF	REV__ENST00000528806.5_1_14:23598711-23607206:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	355.579345703125	3	356.189101	1065.54547	-0.60208	-0.00021445	0.7839	0.00027922	0.18183	6.4764E-05	356.18911662451956	26.451	0.20351	27.111	26.957	27.161	0.65992					5	3	2	0	0	0	0.72086	1	8886	8886		11.518	0.61892	1	855870	+		30486	25809	22005	22171	29789	29789					0.015322510922715082
LHGKSQLA	8	Unmodified	_LHGKSQLA_					0	0	0		nc|ENSG00000197847|A6NK97|SLC22A20P	nc|ENSG00000197847|A6NK97|SLC22A20P	nc|ENSG00000197847|A6NK97|SLC22A20P	MULTI-MSMS	A375_MHC_IP_R2	2	427.2460632324219	2	427.248152	852.481751	-0.19932	-8.5159E-05	-0.24221	-0.00010348	-0.44153	-0.00018864	427.24794904094307	31.924	0.76231	32.661	32.095	32.857	0.73691					19	14	2	0	0	0	0.77603	1	11087	11087		9.3474	0	1	2048500			30487	14848	22006	22172	29790	29790					0.0496093544585392
LHGSIIVGID	10	Unmodified	_LHGSIIVGID_					0	0	0		nc|ENSG00000087303|Q14112-2|NID2;ENSG00000087303|ENST00000216286|NID2	nc|ENSG00000087303|Q14112-2|NID2	nc|ENSG00000087303|Q14112-2|NID2	MULTI-SECPEP	A375_MHC_IP_R2	2	512.6951293945312	2	512.295299	1022.57605	-0.58111	-0.0002977	0.32442	0.0001662	-0.25669	-0.0001315	512.2954153843262	85.73	1.0178	86.466	86.034	87.052	0.73601					27	19	2	0	0	0	0.78945	1	32565	32565		9.3831	0	1	3832500			30488	1870	22007	22173	29791	29791					0.06566029477335178
LHHGLTSD	8	Unmodified	_LHHGLTSD_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MSMS	A375_MHC_IP_R1	1	440.1401672363281	2	440.219591	878.42463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.958	1	43.958	43.458	44.458	0								0	0	0	0.16876	1	15313	15313		10.183	0	1				30489	7942	22008	22174	29792	29792					-0.01944531830520191
LHHHQTFAGK	10	Unmodified	_LHHHQTFAGK_					0	0	0		TESPA1|p.P510L|1|0.41|ENSG00000135426|chr12:54961206-54961206|G/A|missense_variant	TESPA1|p.P510L|1|0.41|ENSG00000135426|chr12:54961206-54961206|G/A|missense_variant	TESPA1|p.P510L|1|0.41|ENSG00000135426|chr12:54961206-54961206|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	392.6108703613281	3	392.540468	1174.59957	-0.0059636	-2.341E-06	-2.2146	-0.0008693	-2.2205	-0.00087164	392.53873162513406	44.038	0.45482	44.807	44.53	44.985	0.7691					11	8	2	0	0	0	0.92351	1	16400	16400		6.1918	2.0752	1	659270			30490	29327	22009	22175	29793	29793					0.019258880344978024
LHHIVMLPKK	10	Unmodified	_LHHIVMLPKK_					0	0	0			REV__ENSG00000173467|ENST00000310398|AGR3	REV__ENSG00000173467|ENST00000310398|AGR3	MULTI-SECPEP	A375_MHC_IP_R2	2	405.26080322265625	3	405.917999	1214.73217	-0.38676	-0.00015699	1.383	0.00056139	0.99625	0.0004044	405.91872393726874	59.409	0.45324	60.156	59.896	60.349	0.74714					12	8	2	0	0	0	0.94891	1	22516	22516		0.13989	0	1	776610	+		30491	21223	22010	22176	29794	29794					0.1333919644694106
LHHSSILPFM	10	Unmodified	_LHHSSILPFM_					0	0	0			REV__ENSG00000255154|ENST00000461393|HTD2	REV__ENSG00000255154|ENST00000461393|HTD2	MULTI-SECPEP	A375_MHC_IP_R1	1	394.6242370605469	3	394.54271	1180.6063	0.23761	9.3747E-05	4.0853	0.0016118	4.3229	0.0017056	394.54503792839347	42.861	0.50789	42.861	42.638	43.146	0					11	9	2	0	0	0	0.93406	1	14792	14792		9.544	5.0151	1	481290	+		30492	22873	22011	22177	29795	29795					0.023220648708502267
LHIEDNSEH	9	Unmodified	_LHIEDNSEH_					0	0	0			REV__ENSG00000166450|ENST00000389286|PRTG	REV__ENSG00000166450|ENST00000389286|PRTG	MSMS	A375_MHC_IP_R1	1	547.239990234375	2	547.249077	1092.4836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.57	1	133.57	133.07	134.07	0								0	0	0	0.15486	1	51509	51509		4.3292	1.44	1		+		30493	20679	22012	22178	29796	29796					-0.058941003268500936
LHIEDNSEH	9	Unmodified	_LHIEDNSEH_					0	0	0			REV__ENSG00000166450|ENST00000389286|PRTG	REV__ENSG00000166450|ENST00000389286|PRTG	MSMS	A375_MHC_IP_R2	2	547.2400512695312	2	547.249077	1092.4836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.47	1	133.63	133.13	134.13	0.16487								0	0	0	0.15486	1	52505	52505		4.3292	1.334	1		+		30494	20679	22012	22178	29797	29797					-0.058941003268500936
LHIFLFQDQPI	11	Unmodified	_LHIFLFQDQPI_					0	0	0			REV__ENST00000533232.5_1_17:70077499-70080101:-|nuORF	REV__ENST00000533232.5_1_17:70077499-70080101:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	458.15087890625	3	457.587084	1369.73942	0.054529	2.4952E-05	-0.53568	-0.00024512	-0.48115	-0.00022017	457.58685476746444	38.84	0.50721	38.84	38.526	39.033	0					18	9	2	0	0	0	0.9889	1	13094	13094		6.6235	0.3891	1	7721000	+		30495	24740	22013	22179	29798	29798					0.0693420752838847
LHIKKKQRFVE	11	Unmodified	_LHIKKKQRFVE_					0	0	0			REV__nc|ENSG00000273345|Q8IVW4-2|CDKL3	REV__nc|ENSG00000273345|Q8IVW4-2|CDKL3	MULTI-MSMS	A375_MHC_IP_R2	2	476.3607177734375	3	475.961144	1424.8616	-0.48999	-0.00023322	-0.46297	-0.00022035	-0.95296	-0.00045357	475.9610052932653	83.386	3.3101	84.125	83.745	87.055	0.73962					192	64	6	0	0	0	0.73658	2	32286	32286;32514		2.6312	1.4164	1	328400000	+		30496	16148	22014	22180	29799;29800	29799					0.1661666933057404
LHINYVLEY	9	Unmodified	_LHINYVLEY_					0	0	0			REV__ENST00000462503.1_1_8:34180515-34180734:-|nuORF	REV__ENST00000462503.1_1_8:34180515-34180734:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	582.695068359375	2	582.308406	1162.60226	-0.31211	-0.00018174	1.9986	0.0011638	1.6865	0.00098208	582.810737423359	70.117	0.55872	70.852	70.54	71.099	0.73421					14	10	2	0	0	0	0.75466	1	26623	26623		7.9102	1.187	1	2978800	+		30497	24990	22015	22181	29801	29801					0.02746298648821721
LHINYVLEY	9	Unmodified	_LHINYVLEY_					0	0	0			REV__ENST00000462503.1_1_8:34180515-34180734:-|nuORF	REV__ENST00000462503.1_1_8:34180515-34180734:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	582.308406	1162.60226	-0.15571	-9.067E-05	2.8952	0.0016859	2.7395	0.0015952	582.8108780979192	70.84	0.61365	70.84	70.494	71.108	0	-0.0056073	0.00052411	NaN	7.9102	25	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1966100	+		30498	24990	22015	22181							0.02746298648821721
LHIREVKRIH	10	Unmodified	_LHIREVKRIH_					0	0	0		ENST00000530992.1_1_17:32364642-32365872:-|nuORF	ENST00000530992.1_1_17:32364642-32365872:-|nuORF	ENST00000530992.1_1_17:32364642-32365872:-|nuORF	MSMS	A375_MHC_IP_R1	1	650.89990234375	2	650.901663	1299.78877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.49	1	119.49	118.99	119.99	0								0	0	0	0.15283	1	44173	44173		11.64	4.9171	1				30499	13160	22016	22182	29802	29802					0.15086960327835186
LHISDKKWK	9	Unmodified	_LHISDKKWK_					0	0	0			REV__DCC|p.G78S|1|0.4|ENSG00000187323|chr18:52752194-52752194|G/A|missense_variant	REV__DCC|p.G78S|1|0.4|ENSG00000187323|chr18:52752194-52752194|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	385.5833435058594	3	385.560869	1153.66078	0.39134	0.00015089	-0.62388	-0.00024054	-0.23253	-8.9655E-05	385.56058187957103	20.612	0.56116	20.612	20.232	20.793	0					16	10	2	0	0	0	0.73141	1	5230	5230		4.1895	0	1	2737900	+		30500	15970	22017	22183	29803	29803					0.09009400013928826
LHKAHQVVK	9	Unmodified	_LHKAHQVVK_					0	0	0		SDCBP2|p.S165L|1|0.6|ENSG00000125775|chr20:1312653-1312653|G/A|missense_variant	SDCBP2|p.S165L|1|0.6|ENSG00000125775|chr20:1312653-1312653|G/A|missense_variant	SDCBP2|p.S165L|1|0.6|ENSG00000125775|chr20:1312653-1312653|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	353.6097412109375	3	353.885576	1058.6349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.441	1	55.441	54.941	55.941	0								0	0	0	0.15486	1	19828	19828		4.897	0.95262	1				30501	29122	22018	22184	29804	29804					0.10792550562314318
LHKARLQL	8	Unmodified	_LHKARLQL_					0	0	0			REV__KIF25|p.P188L|1|0.31|ENSG00000125337|chr6:168040133-168040133|C/T|missense_variant	REV__KIF25|p.P188L|1|0.31|ENSG00000125337|chr6:168040133-168040133|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	489.9441223144531	2	489.813993	977.613434	-0.27554	-0.00013496	-0.27656	-0.00013546	-0.5521	-0.00027042	489.81382375822676	40.787	0.45403	40.787	40.559	41.013	0					12	8	2	0	0	0	0.972	1	14013	14013		4.756	3.1034	1	2796500	+		30502	26849	22019	22185	29805	29805					0.12373165533620067
LHKFAPPLR	9	Unmodified	_LHKFAPPLR_					0	0	0			REV__ENSG00000116151|ENST00000378531|MORN1	REV__ENSG00000116151|ENST00000378531|MORN1	MSMS	A375_MHC_IP_R1	1	360.23919677734375	3	360.222188	1077.64473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.74	1	39.74	39.24	40.24	0								0	0	0	0.15486	1	13609	13609		8.1555	0.8663	1		+		30503	17942	22020	22186	29806	29806					0.109017385676907
LHKMKKCML	9	Unmodified	_LHKMKKCML_					0	0	0			REV__nc|ENSG00000211959|P01824|IGHV4-39	REV__nc|ENSG00000211959|P01824|IGHV4-39	MULTI-SECPEP	A375_MHC_IP_R1	1	377.24853515625	3	377.878159	1130.61265	0.30249	0.00011431	-3.3761	-0.0012757	-3.0736	-0.0011614	377.8765896900286	24.909	0.30531	24.909	24.647	24.953	0					8	5	2	0	0	0	0.74651	1	7055	7055		5.2969	0	1	5594400	+		30504	27485	22021	22187	29807	29807					0.05256543506379785
LHKPLIGPSV	10	Unmodified	_LHKPLIGPSV_					0	0	0			REV__ENST00000466936.5_1_8:38873382-38873475:+|nuORF	REV__ENST00000466936.5_1_8:38873382-38873475:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	354.1340026855469	3	354.221965	1059.64407	-0.21101	-7.4744E-05	-0.54095	-0.00019162	-0.75196	-0.00026636	354.22176785714396	77.994	0.40795	78.737	78.572	78.98	0.74293					10	7	2	0	0	0	0.7086	1	29659	29659		8.4443	2.7125	1	964410	+		30505	25047	22022	22188	29808	29808					0.11662899128009485
LHKYWKTY	8	Unmodified	_LHKYWKTY_					0	0	0		tr|U7ST12|U7ST12_FUSNUMalatedehydrogenase(Oxaloacetate-decarboxylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01238PE=3SV=1	tr|U7ST12|U7ST12_FUSNUMalatedehydrogenase(Oxaloacetate-decarboxylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01238PE=3SV=1	tr|U7ST12|U7ST12_FUSNUMalatedehydrogenase(Oxaloacetate-decarboxylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01238PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	379.9157409667969	3	380.206315	1137.59712	-0.17868	-6.7936E-05	-3.112	-0.0011832	-3.2907	-0.0012511	380.5395016426044	34.687	0.55804	35.451	35.119	35.677	0.76338					20	10	3	0	0	0	0.972	1	12570	12570		3.2813	2.1716	1	2028400			30506	29657	22023	22189	29809	29809					0.033820395768543676
LHLADLPGQK	10	Unmodified	_LHLADLPGQK_					0	0	0		ENSG00000171649|ENST00000597850|ZIK1;nc|ENSG00000171649|Q3SY52-3|ZIK1;nc|ENSG00000171649|Q3SY52-2|ZIK1;ENST00000307468.4_1_19:58095687-58102640:+|nuORF	ENSG00000171649|ENST00000597850|ZIK1	ENSG00000171649|ENST00000597850|ZIK1	MULTI-MSMS	A375_MHC_IP_R1	1	364.93292236328125	3	364.545108	1090.61349	-0.20129	-7.338E-05	0.2248	8.195E-05	0.023509	8.5701E-06	364.54515165781976	29.586	1.0531	29.586	28.795	29.848	0					38	20	3	0	0	0	0.6502	1	9090	9090		14.957	4.1577	1	8616300			30507	7624	22024	22190	29810	29810					0.07181120742961866
LHLAIIHL	8	Unmodified	_LHLAIIHL_					0	0	0		ENSG00000109320|ENST00000226574|NFKB1;nc|ENSG00000109320|P19838|NFKB1;nc|ENSG00000109320|P19838-3|NFKB1	ENSG00000109320|ENST00000226574|NFKB1	ENSG00000109320|ENST00000226574|NFKB1	MSMS	A375_MHC_IP_R1	1	465.3005676269531	2	465.300188	928.585822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.537	1	19.537	19.037	20.037	0								0	0	0	0.16876	1	4876	4876		0.79363	0	1				30508	2863	22025	22191	29811	29811					0.1186726227338113
LHLASANGN	9	Unmodified	_LHLASANGN_					0	0	0		ENSG00000183206|ENST00000358970|POTEC;ENSG00000166351|ENST00000299443|POTED;nc|ENSG00000188219|Q6S8J3-3|POTEE;nc|ENSG00000278522|A0JP26-2|POTEB3;nc|ENSG00000188219|Q6S8J3-2|POTEE;nc|ENSG00000278522|A0JP26-3|POTEB3;ENSG00000233917|ENST00000439682|POTEB;ENSG00000230031|ENST00000454856|POTEB2;ENSG00000278522|ENST00000611217|POTEB3;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;nc|ENSG00000198062|Q6S545-2|POTEH;nc|ENSG00000187537|Q6S5H5-4|POTEG;nc|ENSG00000187537|Q6S5H5-2|POTEG;ENSG00000222036|ENST00000547889|POTEM;ENSG00000187537|ENST00000547848|POTEG;ENSG00000198062|ENST00000343518|POTEH	ENSG00000183206|ENST00000358970|POTEC;ENSG00000196604|ENST00000409914|POTEF;nc|ENSG00000198062|Q6S545-2|POTEH	ENSG00000196604|ENST00000409914|POTEF	MULTI-SECPEP	A375_MHC_IP_R2	2	449.1632995605469	2	448.732866	895.451179	-0.40806	-0.00018311	-0.92742	-0.00041616	-1.3355	-0.00059927	448.73222515090816	50.953	0.35297	51.707	51.513	51.866	0.75406					9	6	2	0	0	0	0.69504	1	19224	19224		7.9102	0	1	1003600			30509	9064;7065;8833	22026	22192	29812	29812					-0.0007284293918701223
LHLGKVHSPVL	11	Unmodified	_LHLGKVHSPVL_					0	0	0			REV__ENSG00000143819|ENST00000272167|EPHX1	REV__ENSG00000143819|ENST00000272167|EPHX1	MULTI-SECPEP	A375_MHC_IP_R1	1	600.5140991210938	2	600.36659	1198.71863	-0.73532	-0.00044146	-2.0288	-0.001218	-2.7641	-0.0016595	600.3653720434293	142.21	0.25319	142.21	142.08	142.34	0					6	4	2	0	0	0	0.99921	1	54588	54588		0.30703	0	1	7491300	+		30510	19389	22027	22193	29813	29813					0.12721661939372098
LHLIPHHLL	9	Unmodified	_LHLIPHHLL_					0	0	0		ENST00000290881.11_1_16:67217371-67217884:-|nuORF	ENST00000290881.11_1_16:67217371-67217884:-|nuORF	ENST00000290881.11_1_16:67217371-67217884:-|nuORF	MSMS	A375_MHC_IP_R1	1	364.94427490234375	3	364.894071	1091.66038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.267	1	29.267	28.767	29.767	0								0	0	0	0.15468	1	9132	9132		13.906	0.86358	1				30511	10471	22028	22194	29814	29814					0.11822025084757115
LHLKRFSES	9	Unmodified	_LHLKRFSES_					0	0	0		ENSG00000036672|ENST00000260187|USP2;nc|ENSG00000036672|O75604-2|USP2;nc|ENSG00000036672|O75604-3|USP2;nc|ENSG00000036672|O75604-4|USP2	ENSG00000036672|ENST00000260187|USP2	ENSG00000036672|ENST00000260187|USP2	MULTI-MSMS	A375_MHC_IP_R2	2	372.6099853515625	3	372.876857	1115.60874	0.21847	8.1464E-05	-1.0868	-0.00040525	-0.86833	-0.00032378	372.8770394701197	34.574	0.81276	35.335	34.862	35.675	0.7608					36	12	4	0	0	0	0.71902	1	12412	12412		5.2969	2.5617	1	7631100			30512	1141	22029	22195	29815	29815					0.05556236600182274
LHLKTYNL	8	Unmodified	_LHLKTYNL_					0	0	0		ENSG00000101265|ENST00000379400|RASSF2;RASSF2|p.Q253Sfs*14|1|0.1|ENSG00000101265|chr20:4787689-4787690|-/CTCACATGGGCCCTGGAGGA|frameshift_variant	ENSG00000101265|ENST00000379400|RASSF2	ENSG00000101265|ENST00000379400|RASSF2	MULTI-SECPEP	A375_MHC_IP_R1	1	501.69024658203125	2	501.292559	1000.57057	-0.0017644	-8.8449E-07	-0.81218	-0.00040714	-0.81395	-0.00040803	501.29201661786107	48.448	1.1132	48.448	47.768	48.882	0					50	21	3	0	0	0	0.77651	1	16991	16991		42.095	9.7891	1	28909000			30513	2275	22030	22196	29816	29816					0.07030350685522535
LHLKTYNL	8	Unmodified	_LHLKTYNL_					0	0	0		ENSG00000101265|ENST00000379400|RASSF2;RASSF2|p.Q253Sfs*14|1|0.1|ENSG00000101265|chr20:4787689-4787690|-/CTCACATGGGCCCTGGAGGA|frameshift_variant	ENSG00000101265|ENST00000379400|RASSF2	ENSG00000101265|ENST00000379400|RASSF2	MULTI-SECPEP	A375_MHC_IP_R2	2	501.69049072265625	2	501.292559	1000.57057	-0.43503	-0.00021808	-0.51709	-0.00025921	-0.95212	-0.00047729	501.292185201481	47.438	0.71381	48.2	47.766	48.48	0.76128					36	13	4	0	0	0	0.77651	1	17727	17727		26.884	26.884	1	38495000			30514	2275	22030	22196	29817	29817					0.07030350685522535
LHLLGFDRR	9	Unmodified	_LHLLGFDRR_					0	0	0			REV__ENSG00000198919|ENST00000361582|DZIP3	REV__ENSG00000198919|ENST00000361582|DZIP3	MULTI-SECPEP	A375_MHC_IP_R2	2	563.6950073242188	2	563.827632	1125.64071	-0.53792	-0.0003033	-1.0803	-0.00060911	-1.6182	-0.00091241	563.8268751674992	98.05	0.45786	98.81	98.64	99.098	0.75977					22	8	4	0	0	0	0.74651	1	37303	37303		8.5933	0.68312	1	1781200	+		30515	22447	22031	22197	29818	29818					0.08291649073998997
LHLLTKKKI	9	Unmodified	_LHLLTKKKI_					0	0	0			REV__ENSG00000108950|ENST00000592554|FAM20A	REV__ENSG00000108950|ENST00000592554|FAM20A	MSMS	A375_MHC_IP_R1	1	365.3011474609375	3	365.253376	1092.7383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.136	1	77.136	76.636	77.636	0								0	0	0	0.15486	1	28135	28135		5.7319	3.2334	1		+		30516	17564	22032	22198	29819	29819					0.19564037950112834
LHLNRPTLS	9	Unmodified	_LHLNRPTLS_					0	0	0		ENST00000260128.8_1_8:70570870-70571554:+|nuORF	ENST00000260128.8_1_8:70570870-70571554:+|nuORF	ENST00000260128.8_1_8:70570870-70571554:+|nuORF	MSMS	A375_MHC_IP_R1	1	525.9373779296875	2	525.806365	1049.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.671	1	65.671	65.171	66.171	0								0	0	0	0.15486	1	23780	23780		12.532	0	1				30517	10265	22033	22199	29820	29820					0.07536253945750104
LHLRILHLA	9	Unmodified	_LHLRILHLA_					0	0	0		nc|ENSG00000040199|Q6ZVD8-2|PHLPP2;ENSG00000040199|ENST00000568954|PHLPP2	nc|ENSG00000040199|Q6ZVD8-2|PHLPP2	nc|ENSG00000040199|Q6ZVD8-2|PHLPP2	MULTI-MSMS	A375_MHC_IP_R2	2	362.6131896972656	3	362.569588	1084.68693	-0.38538	-0.00013973	-0.99089	-0.00035927	-1.3763	-0.000499	362.56909221061187	18.855	0.41046	19.458	19.423	19.833	0.60308					19	9	3	0	0	0	0.74477	1	5651	5651		2.9952	0	1	74528000			30518	1163	22034	22200	29821	29821					0.1479771397607692
LHLRQHELW	9	Unmodified	_LHLRQHELW_					0	0	0			REV__chr10:13172765-13175510|448|15.49|0.97|4.0|+|0|MCM10,MCM10|1	REV__chr10:13172765-13175510|448|15.49|0.97|4.0|+|0|MCM10,MCM10|1	MULTI-SECPEP	A375_MHC_IP_R1	1	410.61224365234375	3	411.228001	1230.66217	-0.17438	-7.1708E-05	-1.0963	-0.00045084	-1.2707	-0.00052255	411.2274062462451	39.735	0.35507	39.735	39.541	39.896	0					9	6	2	0	0	0	0.7911	1	13636	13636		7.609	0	1	725480	+		30519	15678	22035	22201	29822	29822					0.05607034102695252
LHLSKAKKVC	10	Unmodified	_LHLSKAKKVC_					0	0	0		ENST00000495599.1_1_X:23685681-23689545:+|nuORF	ENST00000495599.1_1_X:23685681-23689545:+|nuORF	ENST00000495599.1_1_X:23685681-23689545:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	375.9522705078125	3	376.230355	1125.66923	0.029352	1.1043E-05	1.7544	0.00066006	1.7838	0.0006711	376.5648743170417	29.029	0.35602	29.029	28.845	29.201	0					15	6	3	0	0	0	0.92832	1	9077	9077		8.4443	6.1615	1	2983900			30520	12710	22036	22202	29823	29823					0.11142630658900998
LHMDSDDEI	9	Unmodified	_LHMDSDDEI_					0	0	0		nc|ENSG00000104218|Q1MSJ5-1|CSPP1;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1;ENST00000521168.5_1_8:68070723-68107652:+|nuORF;nc|ENSG00000104218|Q1MSJ5-2|CSPP1	nc|ENSG00000104218|Q1MSJ5-1|CSPP1	nc|ENSG00000104218|Q1MSJ5-1|CSPP1	MULTI-SECPEP	A375_MHC_IP_R1	1	538.124267578125	2	537.724046	1073.43354	-0.59951	-0.00032237	0.013895	7.4718E-06	-0.58562	-0.0003149	537.7245581445464	96.768	1.3164	96.768	96.478	97.794	0					50	25	3	0	0	0	0.62767	1	35542	35542		16.942	6.1184	1	3376900			30521	2491	22037	22203	29824	29824					-0.100239710470305
LHMDSDDEI	9	Unmodified	_LHMDSDDEI_					0	0	0		nc|ENSG00000104218|Q1MSJ5-1|CSPP1;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1;ENST00000521168.5_1_8:68070723-68107652:+|nuORF;nc|ENSG00000104218|Q1MSJ5-2|CSPP1	nc|ENSG00000104218|Q1MSJ5-1|CSPP1	nc|ENSG00000104218|Q1MSJ5-1|CSPP1	MULTI-SECPEP	A375_MHC_IP_R2	2	538.1241455078125	2	537.724046	1073.43354	-0.81841	-0.00044008	0.48347	0.00025998	-0.33493	-0.0001801	537.7245548815182	96.005	0.91439	96.755	96.246	97.16	0.75045					43	17	4	0	0	0	0.43707	1	36414	36414		36.044	14.298	1	5112400			30522	2491	22037	22203	29825	29825					-0.100239710470305
LHMEIIVE	8	Unmodified	_LHMEIIVE_					0	0	0		tr|U7SVW1|U7SVW1_FUSNUElongationfactor4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=lepAPE=3SV=1	tr|U7SVW1|U7SVW1_FUSNUElongationfactor4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=lepAPE=3SV=1	tr|U7SVW1|U7SVW1_FUSNUElongationfactor4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=lepAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	491.6898193359375	2	492.265153	982.515753	-0.1577	-7.7629E-05	-0.059349	-2.9215E-05	-0.21705	-0.00010684	492.26498965843047	78.53	0.50635	78.53	78.301	78.807	0					12	9	2	0	0	0	0.97144	1	28739	28739		9.3474	0	1	1454200			30523	29800	22038	22204	29826	29826					0.02379595822594638
LHNELSKKY	9	Unmodified	_LHNELSKKY_					0	0	0			REV__nc|ENSG00000177888|Q5SVQ8-2|ZBTB41	REV__nc|ENSG00000177888|Q5SVQ8-2|ZBTB41	MULTI-SECPEP	A375_MHC_IP_R2	2	378.2767028808594	3	377.876746	1130.60841	-0.13087	-4.9454E-05	0.092293	3.4876E-05	-0.038581	-1.4579E-05	377.87687065693797	24.238	0.2026	24.882	24.755	24.958	0.64368					9	3	3	0	0	0	0.75842	1	7952	7952		2.7352	0	1	6227500	+		30524	21474	22039	22205	29827	29827					0.04832816880343671
LHNVFLLY	8	Unmodified	_LHNVFLLY_					0	0	0		ENSG00000138111|ENST00000238936|MFSD13A	ENSG00000138111|ENST00000238936|MFSD13A	ENSG00000138111|ENST00000238936|MFSD13A	MULTI-MSMS	A375_MHC_IP_R2	2	511.7835998535156	2	509.789653	1017.56475	-0.75729	-0.00038606	-2.3005	-0.0011728	-3.0578	-0.0015588	509.78746315478156	73.002	1.1189	73.737	73.328	74.447	0.7354					57	21	5	0	0	0	0.77123	1	27789	27789		14.582	1.0738	1	6302200			30525	4959	22040	22206	29828	29828					0.05667252173861925
LHPDGTWFL	9	Unmodified	_LHPDGTWFL_					0	0	0			REV__nc|ENSG00000151779|A2RRP1-2|NBAS	REV__nc|ENSG00000151779|A2RRP1-2|NBAS	MULTI-SECPEP	A375_MHC_IP_R1	1	362.9382019042969	3	362.51867	1084.53418	0.70827	0.00025676	-0.57811	-0.00020957	0.13017	4.7188E-05	362.5184010083203	44.764	0.55927	44.764	44.42	44.98	0					16	10	2	0	0	0	0.71541	1	15614	15614		7.609	1.4032	1	3513900	+		30526	19773	22041	22207	29829	29829					-0.004705262112111086
LHPDHPETV	9	Unmodified	_LHPDHPETV_					0	0	0		nc|ENSG00000135248|Q96KD3-3|GARIN1B;ENST00000493738.5_1_7:128354060-128363382:+|nuORF;ENSG00000135248|ENST00000621392|GARIN1B;nc|ENSG00000135248|Q96KD3|GARIN1B	nc|ENSG00000135248|Q96KD3-3|GARIN1B;nc|ENSG00000135248|Q96KD3|GARIN1B	nc|ENSG00000135248|Q96KD3-3|GARIN1B	MULTI-SECPEP	A375_MHC_IP_R1	1	522.2158203125	2	522.759081	1043.50361	-0.55392	-0.00028957	-0.041017	-2.1442E-05	-0.59494	-0.00031101	522.7588076954233	34.278	0.30275	34.278	34.154	34.456	0					9	5	2	0	0	0	0.74651	1	11255	11255		4.756	4.756	1	2347400			30527	14616;14617	22042	22208	29830	29830					-0.016403045962533724
LHPHLAHYHA	10	Unmodified	_LHPHLAHYHA_					0	0	0		ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111	ENSG00000157450|ENST00000348370|RNF111	ENSG00000157450|ENST00000348370|RNF111	MULTI-SECPEP	A375_MHC_IP_R2	2	399.60791015625	3	399.20883	1194.60466	-0.11261	-4.4956E-05	-1.1202	-0.00044719	-1.2328	-0.00049215	399.20825723593794	40.065	0.50665	40.839	40.524	41.031	0.77451					20	9	3	0	0	0	0.78079	1	14820	14820		10.8	3.6978	1	3738200			30528	6245	22043	22209	29831	29831					0.015141918971266932
LHPIEQDVN	9	Unmodified	_LHPIEQDVN_					0	0	0			REV__ASB5|p.D193N|1|0.09|ENSG00000164122|chr4:176221248-176221248|C/T|missense_variant	REV__ASB5|p.D193N|1|0.09|ENSG00000164122|chr4:176221248-176221248|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1712646484375	2	532.772188	1063.52982	-0.43718	-0.00023291	0.092122	4.908E-05	-0.34505	-0.00018383	532.7720104873332	126.1	0.25126	126.1	125.95	126.2	0					7	4	2	0	0	0	0.73008	1	48159	48159		17.113	7.039	1	8489400	+		30529	15460	22044	22210	29832	29832					0.0005996457523451681
LHPIEQDVN	9	Unmodified	_LHPIEQDVN_					0	0	0			REV__ASB5|p.D193N|1|0.09|ENSG00000164122|chr4:176221248-176221248|C/T|missense_variant	REV__ASB5|p.D193N|1|0.09|ENSG00000164122|chr4:176221248-176221248|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	532.772188	1063.52982	-0.6707	-0.00035733	-0.77604	-0.00041345	-1.4467	-0.00077078	532.7716248483762	125.58	0.40282	125.88	125.72	126.12	0.2951	-0.1107	-7.7974E-05	NaN	17.113	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8704300	+		30530	15460	22044	22210							0.0005996457523451681
LHPLKQVEI	9	Unmodified	_LHPLKQVEI_					0	0	0			REV__nc|ENSG00000171502|Q17RW2-2|COL24A1	REV__nc|ENSG00000171502|Q17RW2-2|COL24A1	MULTI-SECPEP	A375_MHC_IP_R1	1	358.9255676269531	3	359.553603	1075.63898	0.077497	2.7864E-05	-0.19048	-6.8486E-05	-0.11298	-4.0622E-05	359.55347776210266	59.168	0.30502	59.168	58.99	59.295	0					9	5	2	0	0	0	0.74651	1	21209	21209		5.2969	0	1	1223800	+		30531	21072	22045	22211	29833	29833					0.1041859526535518
LHPQTKELAA	10	Unmodified	_LHPQTKELAA_					0	0	0			REV__nc|ENSG00000151208|Q8TDM6-2|DLG5	REV__nc|ENSG00000151208|Q8TDM6-2|DLG5	MULTI-MSMS	A375_MHC_IP_R2	2	370.2612609863281	3	369.876746	1106.60841	0.11737	4.3414E-05	-0.39519	-0.00014617	-0.27781	-0.00010276	369.87656040498075	34.637	0.65739	35.401	35.171	35.829	0.76338					23	12	3	0	0	0	0.70651	1	12423	12423		5.4027	0.87384	1	10129000	+		30532	19742	22046	22212	29834	29834					0.05936816880353035
LHPRLGPGA	9	Unmodified	_LHPRLGPGA_					0	0	0		ENST00000558115.1_1_15:90895613-90902094:+|nuORF;ENST00000354377.7_1_15:90895613-90902094:+|nuORF	ENST00000558115.1_1_15:90895613-90902094:+|nuORF	ENST00000558115.1_1_15:90895613-90902094:+|nuORF	MSMS	A375_MHC_IP_R1	1	459.36962890625	2	459.269419	916.524284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.047	1	43.047	42.547	43.547	0								0	0	0	0.15486	1	14947	14947		7.9102	0.3012	1				30533	10939	22047	22213	29835	29835					0.06268330574096126
LHPRTWPGQKG	11	Unmodified	_LHPRTWPGQKG_					0	0	0		ENST00000538936.6_2_17:79860746-79861205:-|nuORF	ENST00000538936.6_2_17:79860746-79861205:-|nuORF	ENST00000538936.6_2_17:79860746-79861205:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	425.9506530761719	3	426.235156	1275.68364	-0.051431	-2.1922E-05	0.18728	7.9827E-05	0.13585	5.7905E-05	426.23533382871	35.038	0.35672	35.038	34.81	35.167	0					8	6	2	0	0	0	0.99819	1	11611	11611		3.5927	1.5067	1	1838400			30534	13259	22048	22214	29836	29836					0.056824191313808115
LHPRTWPGQKG	11	Unmodified	_LHPRTWPGQKG_					0	0	0		ENST00000538936.6_2_17:79860746-79861205:-|nuORF	ENST00000538936.6_2_17:79860746-79861205:-|nuORF	ENST00000538936.6_2_17:79860746-79861205:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	426.235156	1275.68364	-0.61158	-0.00026068	0.27948	0.00011912	-0.3321	-0.00014155	426.2352721264524	34.016	0.25363	34.768	34.6	34.853	0.75225	-0.13527	6.0961E-05	NaN	3.5927	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1661600			30535	13259	22048	22214							0.056824191313808115
LHPSPHHLR	9	Unmodified	_LHPSPHHLR_					0	0	0		ENST00000232766.5_1_3:47385406-47385538:+|nuORF	ENST00000232766.5_1_3:47385406-47385538:+|nuORF	ENST00000232766.5_1_3:47385406-47385538:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	365.2542419433594	3	365.205308	1092.5941	0.21421	7.8231E-05	-0.89642	-0.00032738	-0.68221	-0.00024915	365.53922270271573	59.381	0.5071	59.381	59.041	59.548	0					18	9	3	0	0	0	0.63811	1	21336	21336		8.1555	1.9637	1	2470500			30536	10147	22049	22215	29837	29837					0.05150209242697201
LHPSRGPV	8	Unmodified	_LHPSRGPV_					0	0	0		ENST00000607222.1_1_1:1549960-1550044:-|nuORF	ENST00000607222.1_1_1:1549960-1550044:-|nuORF	ENST00000607222.1_1_1:1549960-1550044:-|nuORF	MSMS	A375_MHC_IP_R1	1	431.6661071777344	2	431.748319	861.482085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.771	1	59.771	59.271	60.271	0								0	0	0	0.16876	1	21506	21506		6.3541	0	1				30537	13917	22050	22216	29838	29838					0.04580355165717265
LHQALELDF	9	Unmodified	_LHQALELDF_					0	0	0		nc|ENSG00000158161|Q99504-2|EYA3;nc|ENSG00000158161|Q99504-4|EYA3;nc|ENSG00000158161|Q99504-5|EYA3;ENSG00000158161|ENST00000373871|EYA3;EYA3|p.S563F|1|0.28|ENSG00000158161|chr1:27974500-27974500|G/A|missense_variant	nc|ENSG00000158161|Q99504-2|EYA3	nc|ENSG00000158161|Q99504-2|EYA3	MULTI-MSMS	A375_MHC_IP_R1	1	362.9255676269531	3	362.525713	1084.55531	0.12097	4.3856E-05	-0.30326	-0.00010994	-0.18229	-6.6086E-05	362.5255706825018	47.237	0.56481	47.237	46.952	47.517	0					17	10	2	0	0	0	0.71977	1	16640	16640		2.9952	0	1	2643100			30538	6291	22051	22217	29839	29839					0.0164143909764789
LHQAVPLLVP	10	Unmodified	_LHQAVPLLVP_					0	0	0		nc|ENSG807|P61550|ERVS71-1	nc|ENSG807|P61550|ERVS71-1	nc|ENSG807|P61550|ERVS71-1	MULTI-MSMS	A375_MHC_IP_R1	1	362.8502502441406	3	362.893848	1085.65972	0.0055448	2.0122E-06	-2.5188	-0.00091406	-2.5133	-0.00091205	363.2277410416851	19.297	0.49524	19.297	19.23	19.725	0					22	10	3	0	0	0	0.7098	1	4877	4877		4.1895	0	1	37143000			30539	14968	22052	22218	29840	29840					0.1203118564505985
LHQGPSTV	8	Unmodified	_LHQGPSTV_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-MSMS	A375_MHC_IP_R1	1	420.6275329589844	2	419.72451	837.434466	0.1376	5.7755E-05	0.70151	0.00029444	0.83911	0.00035219	419.72385965674823	103.67	4.0067	103.67	100.53	104.54	0					126	78	3	0	0	0	0.7779	1	37739	37739		2.5775	0	1	3322700	+		30540	22171	22053	22219	29841	29841					0.009246561748568638
LHQKERMF	8	Unmodified	_LHQKERMF_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213	REV__nc|ENSG00000173821|Q63HN8|RNF213	MSMS	A375_MHC_IP_R1	1	363.62994384765625	3	363.527171	1087.55968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.915	1	46.915	46.415	47.415	0								0	0	0	0.16876	1	16484	16484		6.7232	3.988	1		+		30541	21249	22054	22220	29842	29842					0.019406250395832103
LHQLESLAK	9	Unmodified	_LHQLESLAK_					0	0	0		nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	MULTI-MSMS	A375_MHC_IP_R1	1	519.6978759765625	2	519.800749	1037.58694	-0.60119	-0.0003125	0.11625	6.0428E-05	-0.48494	-0.00025207	519.8007249384602	65.078	1.3234	65.078	64.393	65.717	0					50	25	4	0	0	0	0.73804	1	23374	23374		3.5965	0.31518	1	16647000			30542	3809	22055	22221	29843	29843					0.06965431851631365
LHQQFETF	8	Unmodified	_LHQQFETF_					0	0	0		ENST00000296885.7_1_6:88117749-88144792:+|nuORF;ENST00000489338.6_1_6:88125312-88173965:+|nuORF;ENSG00000272514|ENST00000369562|CFAP206	ENST00000296885.7_1_6:88117749-88144792:+|nuORF	ENST00000296885.7_1_6:88117749-88144792:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	526.21875	2	525.256174	1048.49779	-0.72526	-0.00038095	-0.4817	-0.00025302	-1.207	-0.00063397	525.7584561213174	49.958	0.45895	50.712	50.445	50.904	0.75406					22	8	3	0	0	0	0.75322	1	18854	18854		19.439	0.18201	1	2281000			30543	9991	22056	22222	29844	29844					-0.024514031078979315
LHQRRRLL	8	Unmodified	_LHQRRRLL_					0	0	0		nc|ENSG00000292277|Q9UJ98|STAG3;ENSG00000066923|ENST00000615138|STAG3;nc|ENSG00000292277|Q9UJ98-3|STAG3	nc|ENSG00000292277|Q9UJ98|STAG3	nc|ENSG00000292277|Q9UJ98|STAG3	MSMS	A375_MHC_IP_R1	1	364.6009521484375	3	364.568469	1090.68358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.113	1	29.113	28.613	29.613	0								0	0	0	0.16876	1	9065	9065		7.9102	0	1				30544	1422	22057	22223	29845	29845					0.1418646392210121
LHQTPGSV	8	Unmodified	_LHQTPGSV_					0	0	0			REV__ENSG00000196074|ENST00000357552|SYCP2	REV__ENSG00000196074|ENST00000357552|SYCP2	MULTI-MSMS	A375_MHC_IP_R1	1	420.6274719238281	2	419.72451	837.434466	0.1376	5.7755E-05	0.70151	0.00029444	0.83911	0.00035219	419.72385965674823	103.67	4.0067	103.67	100.53	104.54	0					126	78	3	0	0	0	0.7779	1	37692	37692		2.5775	0	1	3322700	+		30545	22155	22058	22224	29846	29846					0.009246561748682325
LHQWIWRRY	9	Unmodified	_LHQWIWRRY_					0	0	0			REV__CNBD2|p.S301F|1|0.08|ENSG00000149646|chr20:35995084-35995084|C/T|missense_variant	REV__CNBD2|p.S301F|1|0.08|ENSG00000149646|chr20:35995084-35995084|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	679.2197875976562	2	679.367456	1356.72036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.897	1	91.897	91.397	92.397	0								0	0	0	0.15486	1	33768	33768		7.9102	2.1783	1		+		30546	15807	22059	22225	29847	29847					0.056267157479624075
LHQYDKLR	8	Unmodified	_LHQYDKLR_					0	0	0			REV__ENST00000549260.5_1_12:105152780-105153023:+|nuORF	REV__ENST00000549260.5_1_12:105152780-105153023:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	358.6011047363281	3	358.201452	1071.58253	-0.55621	-0.00019923	-0.01092	-3.9117E-06	-0.56713	-0.00020315	358.20145230572894	22.862	0.45902	23.492	23.164	23.623	0.63014					16	8	3	0	0	0	0.77501	1	7291	7291		13.042	2.8919	1	8354900	+		30547	26025	22060	22226	29848	29848					0.049599674286810114
LHRHRRRLRRR	11	Unmodified	_LHRHRRRLRRR_					0	0	0		ENSG00000110719|ENST00000265686|TCIRG1;ENST00000533005.5_1_11:67811756-67818283:+|nuORF;nc|ENSG00000110719|Q13488-2|TCIRG1	ENSG00000110719|ENST00000265686|TCIRG1	ENSG00000110719|ENST00000265686|TCIRG1	MSMS	A375_MHC_IP_R1	1	806.6336669921875	2	806.509423	1611.00429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.59	1	125.59	125.09	126.09	0								0	0	0	0.1636	1	47851	47851		0	0	1				30548	2944	22061	22227	29849	29849					0.22323159355846656
LHRHTRRV	8	Unmodified	_LHRHTRRV_					0	0	0			REV__ENSG00000198576|ENST00000356613|ARC	REV__ENSG00000198576|ENST00000356613|ARC	MULTI-SECPEP	A375_MHC_IP_R2	2	358.2814025878906	3	358.884569	1073.63188	-0.58778	-0.00021094	-0.71029	-0.00025491	-1.2981	-0.00046586	358.8852193316957	57.238	0.30608	57.987	57.814	58.12	0.74912					6	5	2	0	0	0	0.972	1	21631	21631		3.5965	0.60125	1	309690	+		30549	22384	22062	22228	29850	29850					0.09800720228167847
LHRKGINFE	9	Unmodified	_LHRKGINFE_					0	0	0			REV__ENSG00000135972|ENST00000258455|MRPS9	REV__ENSG00000135972|ENST00000258455|MRPS9	MULTI-SECPEP	A375_MHC_IP_R2	2	372.2850036621094	3	371.876969	1112.60908	-0.06363	-2.3662E-05	2.2771	0.00084682	2.2135	0.00082315	371.8779502098562	37.256	0.25428	38.027	37.917	38.171	0.7709					6	4	2	0	0	0	0.67483	1	13660	13660		6.6304	0	1	477730	+		30550	18906	22063	22229	29851	29851					0.05727656320073038
LHRKGREAP	9	Unmodified	_LHRKGREAP_					0	0	0		ENST00000559694.5_1_14:24526437-24530034:+|nuORF	ENST00000559694.5_1_14:24526437-24530034:+|nuORF	ENST00000559694.5_1_14:24526437-24530034:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	355.2660827636719	3	355.20883	1062.60466	-0.16053	-5.7023E-05	1.5115	0.00053689	1.3509	0.00047987	355.20932327468137	19.468	0.30465	19.468	19.318	19.623	0					8	5	2	0	0	0	0.74477	1	4892	4892		2.9952	0.71247	1	959500			30551	13482	22064	22230	29852	29852					0.07586191897121353
LHRRRRWW	8	Unmodified	_LHRRRRWW_					0	0	0		ENST00000297293.5_1_7:97832983-97833265:+|nuORF	ENST00000297293.5_1_7:97832983-97833265:+|nuORF	ENST00000297293.5_1_7:97832983-97833265:+|nuORF	MSMS	A375_MHC_IP_R1	1	633.4574584960938	2	633.365582	1264.71661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.291	1	77.291	76.791	77.791	0								0	0	0	0.16876	1	28193	28193		2.8892	0	1				30552	10514	22065	22231	29853	29853					0.09484090764794928
LHRRVWRRRQ	10	Unmodified	_LHRRVWRRRQ_					0	0	0		ENST00000426174.6_1_12:124171384-124171462:+|nuORF	ENST00000426174.6_1_12:124171384-124171462:+|nuORF	ENST00000426174.6_1_12:124171384-124171462:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	732.3392944335938	2	731.939976	1461.8654	-0.9051	-0.00066248	0.075085	5.4958E-05	-0.83001	-0.00060752	731.9399895383231	143.11	0.70612	143.11	142.69	143.39	0					46	13	5	0	0	0	0.95034	1	54891	54891		0.40072	0.40072	1	12534000			30553	11801	22066	22232	29854	29854					0.15294196667673532
LHRRVWRRRQ	10	Unmodified	_LHRRVWRRRQ_					0	0	0		ENST00000426174.6_1_12:124171384-124171462:+|nuORF	ENST00000426174.6_1_12:124171384-124171462:+|nuORF	ENST00000426174.6_1_12:124171384-124171462:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	732.3392333984375	2	731.939976	1461.8654	-0.62207	-0.00045532	-0.080114	-5.8639E-05	-0.70218	-0.00051395	731.93980169722	143.14	0.81049	143.17	142.64	143.45	0.030746					47	15	4	0	0	0	0.72658	1	55929	55929		0.40072	0.093686	1	13428000			30554	11801	22066	22232	29855	29855					0.15294196667673532
LHRSSRRGH	9	Unmodified	_LHRSSRRGH_					0	0	0		ENST00000563909.5_1_16:30773841-30773937:+|nuORF	ENST00000563909.5_1_16:30773841-30773937:+|nuORF	ENST00000563909.5_1_16:30773841-30773937:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	369.2732238769531	3	369.207712	1104.60131	-0.074732	-2.7592E-05	-0.48463	-0.00017893	-0.55936	-0.00020652	369.2075402824745	29.842	0.39226	29.842	29.607	29.999	0					11	7	2	0	0	0	0.65748	1	9401	9401		10.8	5.752	1	13386000			30555	13526	22067	22233	29856	29856					0.05318941843165703
LHRTLPHLV	9	Unmodified	_LHRTLPHLV_					0	0	0			REV__L1PA6_dup2721|chr7:23261331-23261795:+|3.1658018623838435|0.2438478610544489|3.7|472.0|17|1|anti-sense	REV__L1PA6_dup2721|chr7:23261331-23261795:+|3.1658018623838435|0.2438478610544489|3.7|472.0|17|1|anti-sense	MULTI-MSMS	A375_MHC_IP_R2	2	362.9380187988281	3	362.557459	1084.65055	0.044137	1.6002E-05	-0.42216	-0.00015306	-0.37803	-0.00013706	362.5572582552858	43.735	2.3307	44.505	44.076	46.407	0.7691					89	45	4	0	0	0	0.67152	1	16589	16589		9.544	0	1	22999000	+		30556	26893	22068	22234	29857	29857					0.11160837079364683
LHRVRRFL	8	Unmodified	_LHRVRRFL_					0	0	0		ENSG00000142327|ENST00000270357|RNPEPL1	ENSG00000142327|ENST00000270357|RNPEPL1	ENSG00000142327|ENST00000270357|RNPEPL1	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6760864257812	2	548.846159	1095.67777	-0.77534	-0.00042554	-1.7506	-0.00096083	-2.526	-0.0013864	548.8454779134703	76.327	0.50824	77.068	76.742	77.25	0.74052					16	9	3	0	0	0	0.972	1	28889	28889		2.5775	0	1	2056500			30557	5303	22069	22235	29858	29858					0.13375365410433915
LHRWHWRARRR	11	Unmodified	_LHRWHWRARRR_					0	0	0			REV__ENST00000607222.1_1_1:1550199-1550712:-|nuORF	REV__ENST00000607222.1_1_1:1550199-1550712:-|nuORF	MSMS	A375_MHC_IP_R1	1	815.6130981445312	2	815.46415	1628.91375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.08	1	144.08	143.58	144.58	0								0	0	0	0.1636	1	55261	55261		0	0	1		+		30558	26548	22070	22236	29859	29859					0.12444690307552264
LHSDKIPTE	9	Unmodified	_LHSDKIPTE_					0	0	0			REV__ENSG00000163781|ENST00000260810|TOPBP1	REV__ENSG00000163781|ENST00000260810|TOPBP1	MSMS	A375_MHC_IP_R1	1	520.2092895507812	2	520.274564	1038.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.19	1	145.19	144.69	145.69	0								0	0	0	0.15486	1	55663	55663		4.3292	2.0265	1		+		30559	20409	22071	22237	29860	29860					0.016848487179913718
LHSDLPPSV	9	Unmodified	_LHSDLPPSV_					0	0	0			REV__ENSG00000166963|ENST00000300231|MAP1A	REV__ENSG00000166963|ENST00000300231|MAP1A	MSMS	A375_MHC_IP_R1	1	482.66619873046875	2	482.758549	963.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.303	1	46.303	45.803	46.803	0								0	0	0	0.062773	1	16238	16238		50.855	12.704	1		+		30560	20723	22072	22238	29861	29861					0.019334810348595965
LHSDLPPSV	9	Unmodified	_LHSDLPPSV_					0	0	0			REV__ENSG00000166963|ENST00000300231|MAP1A	REV__ENSG00000166963|ENST00000300231|MAP1A	MSMS	A375_MHC_IP_R1	1	482.66644287109375	2	482.758549	963.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.91	1	46.91	46.41	47.41	0								0	0	0	0.099728	1	16482	16482		42.095	11.87	1		+		30561	20723	22072	22238	29862	29862					0.019334810348595965
LHSDLPPSV	9	Unmodified	_LHSDLPPSV_					0	0	0			REV__ENSG00000166963|ENST00000300231|MAP1A	REV__ENSG00000166963|ENST00000300231|MAP1A	MSMS	A375_MHC_IP_R1	1	482.6665344238281	2	482.758549	963.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.684	1	47.684	47.184	48.184	0								0	0	0	0.073358	1	16783	16783		48.346	12.302	1		+		30562	20723	22072	22238	29863	29863					0.019334810348595965
LHSDLPPSV	9	Unmodified	_LHSDLPPSV_					0	0	0			REV__ENSG00000166963|ENST00000300231|MAP1A	REV__ENSG00000166963|ENST00000300231|MAP1A	MSMS	A375_MHC_IP_R2	2	482.6663818359375	2	482.758549	963.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.757	1	46.523	46.023	47.023	0.76519								0	0	0	0.14359	1	17115	17115		28.487	5.3384	1		+		30563	20723	22072	22238	29864	29864					0.019334810348595965
LHSDLPPSV	9	Unmodified	_LHSDLPPSV_					0	0	0			REV__ENSG00000166963|ENST00000300231|MAP1A	REV__ENSG00000166963|ENST00000300231|MAP1A	MSMS	A375_MHC_IP_R2	2	482.6659240722656	2	482.758549	963.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.359	1	47.124	46.624	47.624	0.76519								0	0	0	0.14905	1	17360	17360		23.148	0	1		+		30564	20723	22072	22238	29865	29865					0.019334810348595965
LHSELHSIY	9	Unmodified	_LHSELHSIY_					0	0	0			REV__ENSG00000182463|ENST00000371497|TSHZ2	REV__ENSG00000182463|ENST00000371497|TSHZ2	MULTI-MSMS	A375_MHC_IP_R2	2	550.688232421875	2	549.782556	1097.55056	-0.70281	-0.00038639	1.2144	0.00066765	0.51158	0.00028126	549.7825854374538	69.73	0.91328	70.464	69.981	70.895	0.73421					53	17	5	0	0	0	0.40079	1	26336	26336		24.674	2.0158	1	24175000	+		30565	21690	22073	22239	29866	29866					0.00568554954929823
LHSEVNQHY	9	Unmodified	_LHSEVNQHY_					0	0	0			REV__ENSG00000153107|ENST00000341068|ANAPC1	REV__ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MSMS	A375_MHC_IP_R1	1	564.1853637695312	2	563.767437	1125.52032	-0.53911	-0.00030393	-0.67693	-0.00038163	-1.216	-0.00068557	563.7670970945269	39.567	0.30315	39.567	39.34	39.643	0					9	5	2	0	0	0	0.43185	1	13565	13565		23.148	5.0134	1	2514300	+		30566	19827	22074	22240	29867	29867					-0.037418037102725066
LHSIHVRRK	9	Unmodified	_LHSIHVRRK_					0	0	0			REV__EPHB3|p.E407K|1|0.2|ENSG00000182580|chr3:184577048-184577048|G/A|missense_variant	REV__EPHB3|p.E407K|1|0.2|ENSG00000182580|chr3:184577048-184577048|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	573.7421264648438	2	573.354348	1144.69414	-0.051163	-2.9334E-05	1.4941	0.00085665	1.4429	0.00082731	573.3559633076337	142.8	0.61012	142.83	142.48	143.09	0.030731					25	11	3	0	0	0	0.75523	1	55793	55793		2.0598	0	1	2716700	+		30567	26585	22075	22241	29868	29868					0.12758446576503957
LHSIHVRRK	9	Unmodified	_LHSIHVRRK_					0	0	0			REV__EPHB3|p.E407K|1|0.2|ENSG00000182580|chr3:184577048-184577048|G/A|missense_variant	REV__EPHB3|p.E407K|1|0.2|ENSG00000182580|chr3:184577048-184577048|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	573.354348	1144.69414	-0.051163	-2.9334E-05	1.4941	0.00085665	1.4429	0.00082731	573.3559633076337	142.8	0.61012	142.83	142.48	143.09	0.030731	0.018387	-0.00039632	NaN	2.0598	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2716700	+		30568	26585	22075	22241							0.12758446576503957
LHSKCLFAK	9	Unmodified	_LHSKCLFAK_					0	0	0			REV__nc|ENSG00000256060|Q8IVP9-2|ZNF547	REV__nc|ENSG00000256060|Q8IVP9-2|ZNF547	MSMS	A375_MHC_IP_R1	1	523.6926879882812	2	523.794412	1045.57427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.5	1	29.5	29	30	0								0	0	0	0.1535	1	9253	9253		15.847	0.078963	1		+		30569	19803	22076	22242	29869	29869					0.053306971877191245
LHSKNRRVK	9	Unmodified	_LHSKNRRVK_					0	0	0			REV__chr3:53235174-53238967|142|41.06|0.04|10.02|-|1|TE_info:THE1B,THE1B_dup3656,ERVL-MaLR,LTR,donor,+,53238967,53239286|TKT,None|3	REV__chr3:53235174-53238967|142|41.06|0.04|10.02|-|1|TE_info:THE1B,THE1B_dup3656,ERVL-MaLR,LTR,donor,+,53238967,53239286|TKT,None|3	MULTI-MSMS	A375_MHC_IP_R2	2	380.3035888671875	3	379.903629	1136.68906	-0.28662	-0.00010889	0.097087	3.6884E-05	-0.18953	-7.2003E-05	379.9035823801172	24.441	0.25434	25.085	24.958	25.212	0.64368					9	4	3	0	0	0	0.59266	1	8054	8054		15.248	5.0979	1	14077000	+		30570	15749	22077	22243	29870	29870					0.12618142713881753
LHSLALLGV	9	Unmodified	_LHSLALLGV_					0	0	0		ENST00000575427.1_1_17:7306387-7306724:-|nuORF;ENSG00000205544|ENST00000302422|TMEM256	ENST00000575427.1_1_17:7306387-7306724:-|nuORF	ENST00000575427.1_1_17:7306387-7306724:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	462.1452941894531	2	461.789653	921.564752	-0.19776	-9.1324E-05	0.23429	0.00010819	0.036529	1.6869E-05	461.7897178321159	98.367	0.55817	98.367	98.101	98.659	0					22	10	3	0	0	0	0.20094	1	36124	36124		44.407	0	1	3405800			30571	9517	22078	22244	29871	29871					0.10083252173876645
LHSLALLGV	9	Unmodified	_LHSLALLGV_					0	0	0		ENST00000575427.1_1_17:7306387-7306724:-|nuORF;ENSG00000205544|ENST00000302422|TMEM256	ENST00000575427.1_1_17:7306387-7306724:-|nuORF	ENST00000575427.1_1_17:7306387-7306724:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	462.189453125	2	461.789653	921.564752	-0.66877	-0.00030883	0.42362	0.00019563	-0.24514	-0.0001132	461.7898175373338	97.287	0.81384	98.043	97.72	98.534	0.75586					26	15	3	0	0	0	0.20094	1	36912	36912		36.044	5.8194	1	3359200			30572	9517	22078	22244	29872	29872					0.10083252173876645
LHSLNLRRKD	10	Unmodified	_LHSLNLRRKD_					0	0	0		ENST00000295454.7_1_4:47033615-47033663:+|nuORF	ENST00000295454.7_1_4:47033615-47033663:+|nuORF	ENST00000295454.7_1_4:47033615-47033663:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	418.3207092285156	3	417.914194	1250.72075	0.24095	0.0001007	1.3721	0.00057341	1.613	0.0006741	417.914756083358	47.522	0.35331	47.522	47.315	47.668	0					11	6	2	0	0	0	0.93999	1	16648	16648		4.7159	0	1	2356900			30573	10497	22079	22245	29873	29873					0.1054209067717693
LHSLSRRRL	9	Unmodified	_LHSLSRRRL_					0	0	0			REV__ENST00000434837.7_1_6:37664606-37664897:-|nuORF	REV__ENST00000434837.7_1_6:37664606-37664897:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	379.6158142089844	3	379.903629	1136.68906	-0.28662	-0.00010889	0.097087	3.6884E-05	-0.18953	-7.2003E-05	379.9035823801172	24.441	0.25434	25.085	24.958	25.212	0.64368					9	4	3	0	0	0	0.74875	1	8052	8052		10.8	0	1	14077000	+		30574	24743	22080	22246	29874	29874					0.12618142713881753
LHSQVTLLSV	10	Unmodified	_LHSQVTLLSV_					0	0	0		ENST00000550197.1_1_12:120512327-120527926:+|nuORF;nc|ENSG00000135127|Q6ZP65-2|BICDL1;ENSG00000135127|ENST00000548673|BICDL1	ENST00000550197.1_1_12:120512327-120527926:+|nuORF	ENST00000550197.1_1_12:120512327-120527926:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	365.63262939453125	3	366.21688	1095.62881	-0.17496	-6.4075E-05	1.6271	0.00059585	1.4521	0.00053178	366.2174415224013	18.934	0.13086	19.537	19.452	19.583	0.60308					4	2	2	0	0	0	0.94044	1	5724	5724		6.6304	0.89852	1	6454900			30575	4651	22081	22247	29875	29875					0.08481987540153568
LHSRKDSNW	9	Unmodified	_LHSRKDSNW_					0	0	0		ENST00000373672.7_1_1:32165647-32169480:-|nuORF	ENST00000373672.7_1_1:32165647-32169480:-|nuORF	ENST00000373672.7_1_1:32165647-32169480:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	571.187744140625	2	571.788704	1141.56285	-0.3381	-0.00019332	2.8907	0.0016529	2.5526	0.0014596	571.7909647322183	58.826	0.71268	58.826	58.278	58.99	0					21	13	2	0	0	0	0.71541	1	21118	21118		16.942	12.613	1	1909000			30576	11239	22082	22248	29876	29876					-0.0022640858205704717
LHSSIGTGEIQ	11	Unmodified	_LHSSIGTGEIQ_					0	0	0			REV__nc|ENSG00000115464|Q70CQ2-3|USP34	REV__nc|ENSG00000115464|Q70CQ2-3|USP34	MSMS	A375_MHC_IP_R2	2	381.2490539550781	3	381.199777	1140.5775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.964	1	40.739	40.239	41.239	0.77451								0	0	0	0.15674	1	14780	14780		16.275	7.2983	1		+		30577	17889	22083	22249	29877	29877					0.01283618775460127
LHSSTLWALF	10	Unmodified	_LHSSTLWALF_					0	0	0		ENSG00000277161|ENST00000614443|PIGW	ENSG00000277161|ENST00000614443|PIGW	ENSG00000277161|ENST00000614443|PIGW	MULTI-SECPEP	A375_MHC_IP_R1	1	392.9598083496094	3	392.213358	1173.61824	-0.083812	-3.2872E-05	-0.11771	-4.6168E-05	-0.20152	-7.904E-05	392.2132602893918	24.117	0.40553	24.117	24.042	24.447	0					11	7	2	0	0	0	0.9269	1	6807	6807		3.5871	3.5871	1	3124500			30578	10025	22084	22250	29878	29878					0.038380048857106885
LHSTHLLLDF	10	Unmodified	_LHSTHLLLDF_					0	0	0		ENST00000396981.6_1_17:4175707-4175803:-|nuORF	ENST00000396981.6_1_17:4175707-4175803:-|nuORF	ENST00000396981.6_1_17:4175707-4175803:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	598.224853515625	2	598.327131	1194.63971	-0.5262	-0.00031484	-0.54377	-0.00032535	-1.07	-0.00064019	598.3268437307568	103.22	0.50895	103.99	103.63	104.14	0.76428					14	9	2	0	0	0	0.87163	1	39090	39090		13.906	0	1	2388200			30579	11499	22085	22251	29879	29879					0.050173899144283496
LHSYLHTLL	9	Unmodified	_LHSYLHTLL_					0	0	0			REV__ENSG00000086544|ENST00000263370|ITPKC	REV__ENSG00000086544|ENST00000263370|ITPKC	MULTI-MSMS	A375_MHC_IP_R1	1	366.610107421875	3	366.209836	1095.60768	0.44204	0.00016188	-0.25451	-9.3204E-05	0.18753	6.8677E-05	366.20966913993857	70.228	0.66471	70.228	69.983	70.648	0					17	12	2	0	0	0	0.71902	1	25519	25519		5.2969	0.39987	1	1135800	+		30580	16856	22086	22252	29880	29880					0.0637002223129457
LHSYLHTLL	9	Unmodified	_LHSYLHTLL_					0	0	0			REV__ENSG00000086544|ENST00000263370|ITPKC	REV__ENSG00000086544|ENST00000263370|ITPKC	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	366.209836	1095.60768	0.44204	0.00016188	-0.25451	-9.3204E-05	0.18753	6.8677E-05	366.20966913993857	70.228	0.66471	70.228	69.983	70.648	0	0.094147	-0.00013819	NaN	5.2969	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1135800	+		30581	16856	22086	22252							0.0637002223129457
LHSYLHTLL	9	Unmodified	_LHSYLHTLL_					0	0	0			REV__ENSG00000086544|ENST00000263370|ITPKC	REV__ENSG00000086544|ENST00000263370|ITPKC	MULTI-MATCH	A375_MHC_IP_R2	2		3	366.209836	1095.60768	0.18363	6.7247E-05	-0.035469	-1.2989E-05	0.14816	5.4258E-05	366.20970152213397	69.305	0.50568	70.04	69.778	70.284	0.73421	-0.094147	0.00010245	NaN	5.2969	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	850360	+		30582	16856	22086	22252							0.0637002223129457
LHTAKGRF	8	Unmodified	_LHTAKGRF_					0	0	0		nc|ENSG00000108515|P13929-3|ENO3;nc|ENSG00000108515|P13929-2|ENO3;ENSG00000108515|ENST00000519602|ENO3;ENST00000519834.5_1_17:4855124-4857242:+|nuORF	nc|ENSG00000108515|P13929-3|ENO3	nc|ENSG00000108515|P13929-3|ENO3	MULTI-MSMS	A375_MHC_IP_R1	1	465.3349304199219	2	465.269419	928.524284	-0.4659	-0.00021677	1.1456	0.00053302	0.67971	0.00031625	465.2698640666049	131.81	0.45493	131.81	131.53	131.98	0					13	8	2	0	0	0	0.7773	1	50846	50846		4.756	2.1785	1	3406100			30583	2809	22087	22253	29881	29881					0.057163305741028125
LHTQSHMKSL	10	Unmodified	_LHTQSHMKSL_					0	0	0			REV__nc|ENSG00000130518|Q9H0B3-5|IQCN	REV__nc|ENSG00000130518|Q9H0B3-5|IQCN	MULTI-MSMS	A375_MHC_IP_R1	1	394.26348876953125	3	394.541369	1180.60228	-0.34695	-0.00013688	-3.7121	-0.0014646	-4.059	-0.0016014	394.5401630064927	41.537	0.71582	41.537	41.164	41.88	0					11	5	3	0	0	0	0.66857	1	14428	14428		15.739	4.2207	1	1474700	+		30584	18546	22088	22254	29882	29882					0.019199753771545147
LHTQSHMKSL	10	Unmodified	_LHTQSHMKSL_					0	0	0			REV__nc|ENSG00000130518|Q9H0B3-5|IQCN	REV__nc|ENSG00000130518|Q9H0B3-5|IQCN	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	394.541369	1180.60228	-0.34695	-0.00013688	-3.7121	-0.0014646	-4.059	-0.0016014	394.5401630064927	41.537	0.71582	41.537	41.164	41.88	0	0.047049	-0.00097814	NaN	15.739	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1474700	+		30585	18546	22088	22254							0.019199753771545147
LHVDPENFR	9	Unmodified	_LHVDPENFR_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-SECPEP	A375_MHC_IP_R1	1	376.5931396484375	3	376.192845	1125.55671	0.13243	4.982E-05	0.17902	6.7348E-05	0.31146	0.00011717	376.19289426560664	39.613	0.76083	39.613	39.238	39.999	0					34	14	4	0	0	0	0.021422	1	13542	13542		86.332	61.341	1	16273000			30586	9826	22089	22255	29883	29883					-0.0010492681358300615
LHVDPENFR	9	Unmodified	_LHVDPENFR_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-SECPEP	A375_MHC_IP_R1	1	564.1853637695312	2	563.78563	1125.55671	-0.63607	-0.00035861	0.48728	0.00027472	-0.1488	-8.3889E-05	563.7858531427382	39.601	0.45368	39.601	39.391	39.845	0					19	8	3	0	0	0	0.11849	1	13565	13565		53.404	29.383	1	5711700			30587	9826	22089	22255	29884	29884					-0.0010492681358300615
LHVDPENFR	9	Unmodified	_LHVDPENFR_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-SECPEP	A375_MHC_IP_R2	2	564.1849975585938	2	563.78563	1125.55671	-0.77834	-0.00043882	-0.13042	-7.353E-05	-0.90876	-0.00051235	563.7855529514009	38.826	0.51258	39.6	39.351	39.863	0.77451					16	9	2	0	0	0	0.33896	1	14336	14336		47.594	28.337	1	4835900			30588	9826	22089	22255	29885	29885					-0.0010492681358300615
LHVFFFMA	8	Unmodified	_LHVFFFMA_					0	0	0		ENST00000462386.5_1_2:209112975-209118617:-|nuORF	ENST00000462386.5_1_2:209112975-209118617:-|nuORF	ENST00000462386.5_1_2:209112975-209118617:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	506.1429443359375	2	506.259674	1010.50479	-0.25401	-0.0001286	-0.081325	-4.1172E-05	-0.33533	-0.00016977	506.2595616869989	54.598	0.70786	54.598	53.962	54.67	0					13	13	2	0	0	0	0.90851	1	19504	19504		17.087	4.555	1	1324500			30589	12202	22090	22256	29886	29886					-3.761761024634325E-05
LHVKGTVWE	9	Unmodified	_LHVKGTVWE_					0	0	0			REV__FRMD3|p.A584T|1|0.15|ENSG00000172159|chr9:83247962-83247962|C/T|missense_variant	REV__FRMD3|p.A584T|1|0.15|ENSG00000172159|chr9:83247962-83247962|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	534.69384765625	2	534.795466	1067.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.14	1	123.52	123.02	124.02	0.3766								0	0	0	0.15486	1	47269	47269		7.9102	1.7044	1		+		30590	26650	22091	22257	29887	29887					0.045294491971844764
LHVKIFGTY	9	Unmodified	_LHVKIFGTY_					0	0	0			REV__nc|ENSG00000266094|Q8WWW0-2|RASSF5	REV__nc|ENSG00000266094|Q8WWW0-2|RASSF5	MULTI-SECPEP	A375_MHC_IP_R2	2	539.2316284179688	2	539.30821	1076.60187	-1.2903	-0.00069589	2.1426	0.0011555	0.85226	0.00045963	539.3091676221036	56.825	0.56149	57.575	57.356	57.918	0.75015					15	10	2	0	0	0	0.76827	1	21556	21556		10.824	10.824	1	1160000	+		30591	22926	22092	22258	29888	29888					0.066629237196139
LHVNPENFR	9	Unmodified	_LHVNPENFR_					0	0	0		HBD|p.D100N|1|0.29|ENSG00000223609|chr11:5234008-5234008|C/T|missense_variant	HBD|p.D100N|1|0.29|ENSG00000223609|chr11:5234008-5234008|C/T|missense_variant	HBD|p.D100N|1|0.29|ENSG00000223609|chr11:5234008-5234008|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	376.5931396484375	3	375.86484	1124.57269	0.098314	3.6953E-05	0.48387	0.00018187	0.58218	0.00021882	375.8650072097789	39.666	0.60735	39.666	39.391	39.999	0					24	11	3	0	0	0	0.16595	1	13542	13542		61.602	40.012	1	5541900			30592	14098	22093	22259	29889	29889					0.01538779423322012
LHVNPENFR	9	Unmodified	_LHVNPENFR_					0	0	0		HBD|p.D100N|1|0.29|ENSG00000223609|chr11:5234008-5234008|C/T|missense_variant	HBD|p.D100N|1|0.29|ENSG00000223609|chr11:5234008-5234008|C/T|missense_variant	HBD|p.D100N|1|0.29|ENSG00000223609|chr11:5234008-5234008|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	376.59283447265625	3	375.86484	1124.57269	-0.038598	-1.4508E-05	0.1286	4.8335E-05	0.089998	3.3827E-05	375.864778395831	38.744	0.66473	39.519	39.3	39.965	0.77451					25	12	3	0	0	0	0.040308	1	14288	14288		53.404	36.838	1	3082900			30593	14098	22093	22259	29890	29890					0.01538779423322012
LHVRDVGW	8	Unmodified	_LHVRDVGW_					0	0	0			REV__ENST00000332582.4_1_X:53108520-53108688:+|nuORF	REV__ENST00000332582.4_1_X:53108520-53108688:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	491.6663513183594	2	491.266876	980.519199	-0.49462	-0.00024299	-0.69303	-0.00034046	-1.1877	-0.00058345	491.26700038075427	66.261	0.76094	66.261	65.717	66.478	0					23	14	3	0	0	0	0.7479	1	23997	23997		20.871	1.4322	1	3051100	+		30594	23637	22094	22260	29891	29891					0.028160267114799353
LHVYLPVAV	9	Unmodified	_LHVYLPVAV_					0	0	0		ENST00000543067.5_1_X:21392776-21393022:+|nuORF	ENST00000543067.5_1_X:21392776-21393022:+|nuORF	ENST00000543067.5_1_X:21392776-21393022:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	506.2030029296875	2	505.805303	1009.59605	-0.44601	-0.0002256	-2.1322	-0.0010785	-2.5783	-0.0013041	505.80307381404293	76.481	0.50493	76.481	76.219	76.724	0					23	9	3	0	0	0	0.14801	1	27917	27917		45.75	7.5744	1	2477300			30595	13309	22095	22261	29892	29892					0.0916382520794059
LHWRLLWRSLT	11	Unmodified	_LHWRLLWRSLT_					0	0	0		ENST00000473720.5_1_2:130913661-130934206:-|nuORF	ENST00000473720.5_1_2:130913661-130934206:-|nuORF	ENST00000473720.5_1_2:130913661-130934206:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	494.68792724609375	3	494.289372	1479.84629	-0.7122	-0.00035203	-3.332	-0.001647	-4.0442	-0.001999	494.28766664592837	142.22	0.55659	142.22	141.93	142.49	0					19	9	3	0	0	0	0.73891	1	54577	54577		0.40827	0.31342	1	30129000			30596	12393	22096	22262	29893	29893					0.12555802533415772
LHWRLLWRSLT	11	Unmodified	_LHWRLLWRSLT_					0	0	0		ENST00000473720.5_1_2:130913661-130934206:-|nuORF	ENST00000473720.5_1_2:130913661-130934206:-|nuORF	ENST00000473720.5_1_2:130913661-130934206:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	494.6881103515625	3	494.289372	1479.84629	-0.30045	-0.00014851	-3.1285	-0.0015464	-3.4289	-0.0016949	494.2877475607763	142.28	0.60941	142.31	142.03	142.64	0.030731					20	9	3	0	0	0	0.73896	1	55595	55595		0.36667	0.27183	1	24088000			30597	12393	22096	22262	29894	29894					0.12555802533415772
LHYLARNFY	9	Unmodified	_LHYLARNFY_					0	0	0		nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3	nc|ENSG00000198838|Q15413-2|RYR3	nc|ENSG00000198838|Q15413-2|RYR3	MULTI-MSMS	A375_MHC_IP_R2	2	598.7921752929688	2	598.81419	1195.61383	-0.46802	-0.00028026	1.5893	0.00095169	1.1213	0.00067143	599.3165291290892	63.838	0.40659	64.578	64.292	64.699	0.74023					11	7	2	0	0	0	0.68216	1	24137	24137		8.5933	0.43775	1	3106100			30598	9343	22097	22263	29895	29895					0.023845404628218603
LHYNFPSL	8	Unmodified	_LHYNFPSL_					0	0	0		ENST00000315684.12_2_17:8131156-8131411:-|nuORF	ENST00000315684.12_2_17:8131156-8131411:-|nuORF	ENST00000315684.12_2_17:8131156-8131411:-|nuORF	MSMS	A375_MHC_IP_R1	1	495.652587890625	2	495.75581	989.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.79	1	103.79	103.29	104.29	0								0	0	0	0.16876	1	38115	38115		20.871	4.7221	1				30599	10655	22098	22264	29896	29896					0.0018980224305096272
LIAAELRSL	9	Unmodified	_LIAAELRSL_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MULTI-SECPEP	A375_MHC_IP_R1	1	493.70538330078125	2	493.305667	984.596781	-0.46319	-0.0002285	-0.57733	-0.0002848	-1.0405	-0.0005133	493.3053949908645	65.437	0.76569	65.437	65.206	65.972	0					25	14	3	0	0	0	0.24324	1	23698	23698		45.7	10.768	1	2449300	+		30600	20801	22099	22265	29897	29897					0.10386619857001733
LIAEALFAIS	10	Unmodified	_LIAEALFAIS_					0	0	0		ENSG00000072315|ENST00000262839|TRPC5	ENSG00000072315|ENST00000262839|TRPC5	ENSG00000072315|ENST00000262839|TRPC5	MSMS	A375_MHC_IP_R1	1	524.3754272460938	2	524.307875	1046.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.463	1	74.463	73.963	74.963	0								0	0	0	0.14925	1	27122	27122		19.257	3.4098	1				30601	1536	22100	22266	29898	29898					0.07976084279903262
LIAEIKSSL	9	Unmodified	_LIAEIKSSL_					0	0	0			REV__ENSG00000197056|ENST00000359858|ZMYM1	REV__ENSG00000197056|ENST00000359858|ZMYM1	MULTI-SECPEP	A375_MHC_IP_R2	2	487.69964599609375	2	487.30005	972.585547	-0.41731	-0.00020336	0.26028	0.00012684	-0.15703	-7.6521E-05	487.2999511846202	86.004	0.61153	86.738	86.489	87.1	0.73301					21	11	3	0	0	0	0.05021	1	32708	32708		69.105	0	1	2854600	+		30602	22250	22101	22267	29899	29899					0.09815797762848888
LIAFKERDI	9	Unmodified	_LIAFKERDI_					0	0	0		ENSG00000138604|ENST00000261858|GLCE	ENSG00000138604|ENST00000261858|GLCE	ENSG00000138604|ENST00000261858|GLCE	MULTI-SECPEP	A375_MHC_IP_R1	1	553.224609375	2	552.824224	1103.63389	-0.36604	-0.00020236	0.1996	0.00011035	-0.16644	-9.2012E-05	552.8243119552543	43.252	0.50871	43.252	42.942	43.451	0					18	9	3	0	0	0	0.73363	1	15021	15021		6.7232	2.1943	1	4324000			30603	5005	22102	22268	29900	29900					0.08622291402753035
LIAFKREVP	9	Unmodified	_LIAFKREVP_					0	0	0			REV__tr|U7SJH4|U7SJH4_FUSNUInnermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02143PE=4SV=1	REV__tr|U7SJH4|U7SJH4_FUSNUInnermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02143PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	357.6094970703125	3	358.221965	1071.64407	-0.32489	-0.00011638	0.36671	0.00013136	0.041816	1.498E-05	358.22212172776545	66.58	1.4257	67.316	66.678	68.104	0.73631					40	27	3	0	0	0	0.73008	1	25259	25259		12.241	0	1	4756500	+		30604	28232	22103	22269	29901	29901					0.11110899127993434
LIAHAFITVVS	11	Unmodified	_LIAHAFITVVS_					0	0	0		ENSG00000115464|ENST00000398571|USP34;nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34	ENSG00000115464|ENST00000398571|USP34	ENSG00000115464|ENST00000398571|USP34	MULTI-MSMS	A375_MHC_IP_R2	2	586.7486572265625	2	585.847699	1169.68084	-0.44433	-0.00026031	0.40603	0.00023787	-0.038301	-2.2439E-05	586.3495062316798	133.51	0.25143	133.68	133.55	133.8	0.16487					10	4	3	0	0	0	0.73404	1	52550	52550		10.074	5.3179	1	5767400			30605	3311	22104	22270	29902	29902					0.10279150953897442
LIAHAFITVVS	11	Unmodified	_LIAHAFITVVS_					0	0	0		ENSG00000115464|ENST00000398571|USP34;nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34	ENSG00000115464|ENST00000398571|USP34	ENSG00000115464|ENST00000398571|USP34	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	585.847699	1169.68084	-0.44433	-0.00026031	0.40603	0.00023787	-0.038301	-2.2439E-05	586.3495062316798	133.51	0.25143	133.68	133.55	133.8	0.16487	0.020882	-2.5274E-05	NaN	10.074	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5767400			30606	3311	22104	22270							0.10279150953897442
LIAHSLSFLW	10	Unmodified	_LIAHSLSFLW_					0	0	0			REV__ENST00000372406.5_1_9:132898816-132898981:+|nuORF	REV__ENST00000372406.5_1_9:132898816-132898981:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	594.2341918945312	2	593.834591	1185.65463	-0.41747	-0.00024791	-0.24309	-0.00014436	-0.66056	-0.00039226	593.8342696558377	116.73	0.81312	117.39	117.12	117.94	0.65961					20	15	2	0	0	0	0.92351	1	44201	44201		6.7232	0	1	4330900	+		30607	24065	22105	22271	29903	29903					0.06922881782406876
LIAKPKQIY	9	Unmodified	_LIAKPKQIY_					0	0	0		nc|ENSG00000168959|P41594-3|GRM5;nc|ENSG00000168959|P41594-2|GRM5;ENSG00000168959|ENST00000305447|GRM5	nc|ENSG00000168959|P41594-3|GRM5	nc|ENSG00000168959|P41594-3|GRM5	MULTI-MSMS	A375_MHC_IP_R2	2	358.6217956542969	3	358.562099	1072.66447	-0.3294	-0.00011811	0.50546	0.00018124	0.17606	6.3127E-05	358.562305808942	66.561	0.71524	67.297	66.882	67.597	0.73631					20	13	2	0	0	0	0.68705	1	25189	25189		8.1555	0	1	779620			30608	7366	22106	22272	29904	29904					0.13104069787800654
LIAKPKQIY	9	Unmodified	_LIAKPKQIY_					0	0	0		nc|ENSG00000168959|P41594-3|GRM5;nc|ENSG00000168959|P41594-2|GRM5;ENSG00000168959|ENST00000305447|GRM5	nc|ENSG00000168959|P41594-3|GRM5	nc|ENSG00000168959|P41594-3|GRM5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	358.562099	1072.66447	-0.26349	-9.4477E-05	0.72169	0.00025877	0.4582	0.00016429	358.5624410991329	67.435	0.35661	67.435	67.348	67.704	0	0.06928	0.00015718	NaN	8.1555	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1023800			30609	7366	22106	22272							0.13104069787800654
LIAKPKQIY	9	Unmodified	_LIAKPKQIY_					0	0	0		nc|ENSG00000168959|P41594-3|GRM5;nc|ENSG00000168959|P41594-2|GRM5;ENSG00000168959|ENST00000305447|GRM5	nc|ENSG00000168959|P41594-3|GRM5	nc|ENSG00000168959|P41594-3|GRM5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	358.562099	1072.66447	-0.3294	-0.00011811	0.50546	0.00018124	0.17606	6.3127E-05	358.562305808942	66.561	0.71524	67.297	66.882	67.597	0.73631	-0.06928	-7.5426E-05	NaN	8.1555	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	779620			30610	7366	22106	22272							0.13104069787800654
LIAMGIIELW	10	Unmodified	_LIAMGIIELW_					0	0	0			REV__ENST00000360689.9_1_14:66208907-66209084:+|nuORF	REV__ENST00000360689.9_1_14:66208907-66209084:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	580.2349853515625	2	579.833203	1157.65185	0.038918	2.2566E-05	-2.6279	-0.0015238	-2.589	-0.0015012	579.8316649405956	48.094	1.1617	48.094	47.315	48.476	0					45	22	3	0	0	0	0.57563	1	16770	16770		32.305	6.9062	1	26409000	+		30611	23898	22107	22273	29905	29905					0.07933290333244258
LIARFGHG	8	Unmodified	_LIARFGHG_					0	0	0		ENSG00000183655|ENST00000337975|KLHL25	ENSG00000183655|ENST00000337975|KLHL25	ENSG00000183655|ENST00000337975|KLHL25	MSMS	A375_MHC_IP_R2	2	435.65106201171875	2	435.750862	869.487171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.55	1	101.31	100.81	101.81	0.76278								0	0	0	0.16876	1	38126	38126		5.2307	2.9279	1				30612	8515	22108	22274	29906	29906					0.047206590283281
LIASRWAP	8	Unmodified	_LIASRWAP_					0	0	0			REV__nc|ENSG00000197136|Q9H6A9-3|PCNX3	REV__nc|ENSG00000197136|Q9H6A9-3|PCNX3	MULTI-SECPEP	A375_MHC_IP_R1	1	912.8563232421875	1	913.525413	912.518136	0.35361	0.00032303	3.3695	0.0030782	3.7232	0.0034012	913.5300723268516	114.6	0.30717	114.6	114.41	114.72	0					7	5	2	0	0	0	0.972	1	41995	41995		0.6015	0	1	1612700	+		30613	22260	22109	22275	29907	29907					0.05837812342554116
LIATRHKRHRH	11	Unmodified	_LIATRHKRHRH_					0	0	0			REV__ENST00000450993.6_1_2:219472530-219480430:+|nuORF	REV__ENST00000450993.6_1_2:219472530-219480430:+|nuORF	MSMS	A375_MHC_IP_R2	2	712.7899169921875	2	712.926535	1423.83852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.25	1	122.63	122.13	123.13	0.3766								0	0	0	0.16249	1	46827	46827		5.7319	2.4505	1		+		30614	24889	22110	22276	29908	29908					0.1435508805648169
LICCMPWL	8	Unmodified	_LICCMPWL_					0	0	0			REV__ENST00000321599.8_2_3:49785261-49785576:-|nuORF	REV__ENST00000321599.8_2_3:49785261-49785576:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	490.1734924316406	2	489.73412	977.453687	-0.41732	-0.00020438	2.1618	0.0010587	1.7445	0.00085433	489.73420136662304	86.996	0.20268	86.996	86.831	87.034	0					5	3	2	0	0	0	0.95327	1	31901	31901		11.114	7.1701	1	754360	+		30615	23572	22111	22277	29909	29909					-0.03594170121766638
LICDYCSRY	9	Unmodified	_LICDYCSRY_					0	0	0			REV__nc|ENSG00000095539|Q9NTN9-3|SEMA4G	REV__nc|ENSG00000095539|Q9NTN9-3|SEMA4G	MSMS	A375_MHC_IP_R2	2	568.1822509765625	2	568.249177	1134.4838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.392	1	65.132	64.632	65.632	0.74022								0	0	0	0.15142	1	24414	24414		19.257	2.1441	1		+		30616	27137	22112	22278	29910	29910					-0.07806139922854527
LICNMGILGVP	11	Unmodified	_LICNMGILGVP_					0	0	0			REV__nc|ENSG00000048392|Q7LG56-2|RRM2B	REV__nc|ENSG00000048392|Q7LG56-2|RRM2B	MULTI-SECPEP	A375_MHC_IP_R2	2	565.6718139648438	2	565.309038	1128.60352	-0.79999	-0.00045224	-0.093541	-5.2879E-05	-0.89353	-0.00050512	565.3091427041004	56.393	0.45874	57.143	57	57.459	0.75015					12	8	2	0	0	0	0.94285	1	21362	21362		2.9952	0	1	1423100	+		30617	16369	22113	22279	29911	29911					0.04436473421719711
LICPAKTT	8	Unmodified	_LICPAKTT_					0	0	0			REV__ENSG00000174469|ENST00000361727|CNTNAP2	REV__ENSG00000174469|ENST00000361727|CNTNAP2	MSMS	A375_MHC_IP_R1	1	423.64031982421875	2	423.741314	845.468075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.37	1	142.37	141.87	142.87	0								0	0	0	0.16876	1	54628	54628		5.7604	2.8712	1		+		30618	21286	22114	22280	29912	29912					0.03915941622392438
LICRFFTQV	9	Unmodified	_LICRFFTQV_					0	0	0			REV__DEPDC1B|p.S361F|1|0.25|ENSG00000035499|chr5:60603551-60603551|G/A|missense_variant	REV__DEPDC1B|p.S361F|1|0.25|ENSG00000035499|chr5:60603551-60603551|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	563.7239379882812	2	563.807519	1125.60049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.567	1	79.312	78.812	79.812	0.74474								0	0	0	0.15486	1	29836	29836		13.508	0.46542	1		+		30619	15986	22115	22281	29913	29913					0.04270966359194972
LIDAEYRF	8	Unmodified	_LIDAEYRF_					0	0	0		ENSG00000143971|ENST00000272342|ETAA1	ENSG00000143971|ENST00000272342|ETAA1	ENSG00000143971|ENST00000272342|ETAA1	MULTI-SECPEP	A375_MHC_IP_R2	2	513.1689453125	2	513.766374	1025.5182	-1.1003	-0.00056531	-0.24094	-0.00012379	-1.3413	-0.00068909	513.766316753609	60.083	0.45542	60.83	60.553	61.008	0.74714					9	8	2	0	0	0	0.84748	1	22657	22657		10.824	0	1	931100			30620	5453	22116	22282	29914	29914					0.0064576755189591495
LIDALAKNGV	10	Unmodified	_LIDALAKNGV_					0	0	0			REV__ENSG00000101407|ENST00000373447|TTI1	REV__ENSG00000101407|ENST00000373447|TTI1	MULTI-SECPEP	A375_MHC_IP_R2	2	507.63067626953125	2	507.303124	1012.5917	-0.76438	-0.00038777	0.19695	9.9914E-05	-0.56743	-0.00028786	507.3032279994268	80.327	0.40493	81.072	80.961	81.365	0.74473					13	7	2	0	0	0	0.74754	1	30584	30584		12.241	0	1	1052200	+		30621	17169	22117	22283	29915	29915					0.0859031599438822
LIDDNDLY	8	Unmodified	_LIDDNDLY_					0	0	0		ENSG00000132388|ENST00000396981|UBE2G1	ENSG00000132388|ENST00000396981|UBE2G1	ENSG00000132388|ENST00000396981|UBE2G1	MULTI-MSMS	A375_MHC_IP_R2	2	491.1319580078125	2	490.732197	979.449842	-0.53653	-0.00026329	-0.017838	-8.7538E-06	-0.55437	-0.00027205	490.73210692508906	76.82	0.70679	77.562	77.302	78.009	0.7421					24	13	3	0	0	0	0.45507	1	29149	29149		50.855	10.898	1	2613500			30622	4402	22118	22284	29916	29916					-0.04070521818607631
LIDEEWLCME	10	Unmodified	_LIDEEWLCME_					0	0	0			REV__KDM7A|p.P543L|1|0.5|ENSG00000006459|chr7:140101961-140101961|G/A|missense_variant	REV__KDM7A|p.P543L|1|0.5|ENSG00000006459|chr7:140101961-140101961|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	640.98974609375	2	640.780507	1279.54646	-0.87625	-0.00056148	1.6	0.0010253	0.72378	0.00046378	640.7817999925686	65.459	0.50737	66.197	65.917	66.425	0.73811					15	9	2	0	0	0	0.92957	1	24856	24856		10.074	3.8681	1	1562000	+		30623	26838	22119	22285	29917	29917					-0.0821303864534002
LIDEVHIVK	9	Unmodified	_LIDEVHIVK_					0	0	0		HFM1|p.E419K|2|0.33|ENSG00000162669|chr1:91378165-91378165|C/T|missense_variant;ENSG00000162669|ENST00000370425|HFM1	HFM1|p.E419K|2|0.33|ENSG00000162669|chr1:91378165-91378165|C/T|missense_variant	HFM1|p.E419K|2|0.33|ENSG00000162669|chr1:91378165-91378165|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	355.4599304199219	3	355.881608	1064.623	-0.024957	-8.8818E-06	0.3656	0.00013011	0.34064	0.00012123	355.8817292729625	47.253	0.45928	48.015	47.664	48.123	0.76128					12	8	2	0	0	0	0.8028	1	17593	17593		0.96228	0	1	1373000			30624	6575	22120	22286	29918	29918					0.09326889028466212
LIDKKAATVI	10	Unmodified	_LIDKKAATVI_					0	0	0			REV__ENSG00000083642|ENST00000315596|PDS5B	REV__ENSG00000083642|ENST00000315596|PDS5B	MULTI-MSMS	A375_MHC_IP_R1	1	358.297119140625	3	357.897258	1070.66995	0.078064	2.7939E-05	-0.51972	-0.00018601	-0.44166	-0.00015807	357.897128785938	20.054	1.7803	20.054	19.571	21.352	0					128	34	7	0	0	0	0.36253	1	5436	5436		36.395	7.1139	1	1118900000	+		30625	16808	22121	22287	29919	29919					0.13743748579599924
LIDKKAATVI	10	Unmodified	_LIDKKAATVI_					0	0	0			REV__ENSG00000083642|ENST00000315596|PDS5B	REV__ENSG00000083642|ENST00000315596|PDS5B	MULTI-MSMS	A375_MHC_IP_R1	1	357.9134216308594	3	357.897258	1070.66995	0.39692	0.00014205	-0.43224	-0.0001547	-0.035323	-1.2642E-05	357.8970670989343	22.242	2.5874	22.242	21.048	23.635	0					129	50	4	0	0	0	0.54537	4	5608	5608;5639;5684;6123		24.957	3.3669	1	104940000	+		30626	16808	22121	22287	29920;29921;29922;29923	29920					0.13743748579599924
LIDKKAATVI	10	Unmodified	_LIDKKAATVI_					0	0	0			REV__ENSG00000083642|ENST00000315596|PDS5B	REV__ENSG00000083642|ENST00000315596|PDS5B	MULTI-MSMS	A375_MHC_IP_R2	2	358.29705810546875	3	357.897258	1070.66995	-0.4751	-0.00017004	-0.56184	-0.00020108	-1.0369	-0.00037112	357.89708475220397	18.955	1.3731	19.559	19.423	20.796	0.60308					80	28	6	0	0	0	0.22711	2	6002	6002;6063		46.475	6.236	1	1638599999.9999998	+		30627	16808	22121	22287	29924;29925	29924					0.13743748579599924
LIDKKAATVI	10	Unmodified	_LIDKKAATVI_					0	0	0			REV__ENSG00000083642|ENST00000315596|PDS5B	REV__ENSG00000083642|ENST00000315596|PDS5B	MULTI-MSMS	A375_MHC_IP_R2	2	357.9134826660156	3	357.897258	1070.66995	-0.54657	-0.00019562	0.060806	2.1762E-05	-0.48577	-0.00017385	357.8972451800094	21.741	2.6457	22.361	20.66	23.306	0.61932					121	51	5	0	0	0	0.61179	1	6518	6518		19.987	1.2657	1	65488000	+		30628	16808	22121	22287	29926	29926					0.13743748579599924
LIDKLYNIWIR	11	Unmodified	_LIDKLYNIWIR_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A;ENST00000486964.5_1_2:86305209-86332944:-|nuORF	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MSMS	A375_MHC_IP_R2	2	723.8765258789062	2	723.927012	1445.83947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134	1	134.16	133.66	134.66	0.16487								0	0	0	0.16297	1	52716	52716		3.2813	0	1				30629	1462	22122	22288	29927	29927					0.13438444862163124
LIDKVKIDK	9	Unmodified	_LIDKVKIDK_					0	0	0		NUP210L|p.E995K|1|0.2|ENSG00000143552|chr1:154058213-154058213|C/T|missense_variant	NUP210L|p.E995K|1|0.2|ENSG00000143552|chr1:154058213-154058213|C/T|missense_variant	NUP210L|p.E995K|1|0.2|ENSG00000143552|chr1:154058213-154058213|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	358.9208679199219	3	357.897258	1070.66995	0.078064	2.7939E-05	-0.51972	-0.00018601	-0.44166	-0.00015807	357.897128785938	20.054	1.7803	20.054	19.571	21.352	0					128	34	7	0	0	0	0.068071	1	5116	5116		57.249	0	1	1118900000			30630	15040	22123	22289	29928	29928					0.13743748579599924
LIDKVKIDK	9	Unmodified	_LIDKVKIDK_					0	0	0		NUP210L|p.E995K|1|0.2|ENSG00000143552|chr1:154058213-154058213|C/T|missense_variant	NUP210L|p.E995K|1|0.2|ENSG00000143552|chr1:154058213-154058213|C/T|missense_variant	NUP210L|p.E995K|1|0.2|ENSG00000143552|chr1:154058213-154058213|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	536.7416381835938	2	536.342249	1070.66995	-0.69215	-0.00037123	0.14105	7.5651E-05	-0.5511	-0.00029558	536.342255091166	20.054	1.3226	20.054	19.674	20.997	0					69	25	5	0	0	0	0.58268	1	5263	5263		16.149	2.2431	1	127550000			30631	15040	22123	22289	29929	29929					0.13743748579599924
LIDKVWQL	8	Unmodified	_LIDKVWQL_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENST00000587491.5_1_17:75207779-75210102:+|nuORF	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-SECPEP	A375_MHC_IP_R1	1	508.2024841308594	2	507.80276	1013.59097	-0.13556	-6.8838E-05	-1.3241	-0.0006724	-1.4597	-0.00074124	507.80253601018626	92.643	0.45826	92.643	92.463	92.922	0					12	8	2	0	0	0	0.80467	1	34086	34086		34.402	0	1	1413400			30632	4204	22124	22290	29930	29930					0.08471521345325073
LIDLRRQL	8	Unmodified	_LIDLRRQL_					0	0	0		DOCK3|p.P1852Qfs*45|1|0.39|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant;ENSG00000088538|ENST00000266037|DOCK3	DOCK3|p.P1852Qfs*45|1|0.39|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	DOCK3|p.P1852Qfs*45|1|0.39|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	514.2241821289062	2	513.824558	1025.63456	-0.40405	-0.00020761	-0.022109	-1.136E-05	-0.42616	-0.00021897	513.8244798240462	52.032	0.40798	52.032	51.778	52.186	0					13	7	2	0	0	0	0.97144	1	18513	18513		2.3027	0	1	2285500			30633	784	22125	22291	29931	29931					0.12277130842471706
LIDNINEKV	9	Unmodified	_LIDNINEKV_					0	0	0			REV__tr|U7SMA3|U7SMA3_FUSNUZinc-ribbondomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01879PE=4SV=1	REV__tr|U7SMA3|U7SMA3_FUSNUZinc-ribbondomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01879PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	529.6968994140625	2	529.298039	1056.58152	-0.70293	-0.00037206	0.15418	8.1605E-05	-0.54876	-0.00029046	529.2979543316088	94.818	0.55975	94.818	94.651	95.211	0					16	10	2	0	0	0	0.053904	1	34850	34850		39.95	0	1	912630	+		30634	28296	22126	22292	29932	29932					0.0554970826913177
LIDNSFNRY	9	Unmodified	_LIDNSFNRY_					0	0	0		ENSG00000108592|ENST00000427159|FTSJ3	ENSG00000108592|ENST00000427159|FTSJ3	ENSG00000108592|ENST00000427159|FTSJ3	MULTI-SECPEP	A375_MHC_IP_R1	1	571.6857299804688	2	571.285463	1140.55637	-0.13878	-7.9286E-05	-0.27431	-0.00015671	-0.4131	-0.000236	571.2855345685117	51.458	0.6593	51.458	51.068	51.728	0					24	12	3	0	0	0	0.13064	1	18252	18252		65.235	16.889	1	5740900			30635	2821	22127	22293	29933	29933					-0.008283465334216089
LIDNSFNRY	9	Unmodified	_LIDNSFNRY_					0	0	0		ENSG00000108592|ENST00000427159|FTSJ3	ENSG00000108592|ENST00000427159|FTSJ3	ENSG00000108592|ENST00000427159|FTSJ3	MULTI-SECPEP	A375_MHC_IP_R2	2	571.661865234375	2	571.285463	1140.55637	-0.38837	-0.00022187	-0.54738	-0.00031271	-0.93575	-0.00053458	571.2852922463569	50.784	0.65656	51.538	51.209	51.866	0.75406					24	12	3	0	0	0	0.20451	1	19073	19073		57.722	17.765	1	6906300			30636	2821	22127	22293	29934	29934					-0.008283465334216089
LIDPDLTQY	9	Unmodified	_LIDPDLTQY_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-MSMS	A375_MHC_IP_R2	2	1078.29833984375	1	1077.54627	1076.53899	0.16631	0.00017921	0.21774	0.00023463	0.38406	0.00041384	1077.5462542843964	91.97	0.65659	92.709	92.381	93.038	0.73902					29	12	3	0	0	0	0.0028027	2	35042	34926;35042		139.14	86.87	1	8200200			30637	1441	22128	22294	29935;29936	29936					0.003783131409136331
LIDPDLTQY	9	Unmodified	_LIDPDLTQY_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-SECPEP	A375_MHC_IP_R2	2	539.6762084960938	2	539.276772	1076.53899	-0.7668	-0.00041351	3.5864	0.001934	2.8196	0.0015205	539.2768050049734	91.95	1.0624	92.689	92.329	93.392	0.73901					72	20	6	0	0	0	0.063333	1	34960	34960		82.529	27.756	1	15236000			30638	1441	22128	22294	29937	29937					0.003783131409136331
LIDPDLTQY	9	Unmodified	_LIDPDLTQY_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-MATCH	A375_MHC_IP_R1	1		1	1077.54627	1076.53899	0.37243	0.00040131	-0.10453	-0.00011264	0.2679	0.00028867	1077.5460230115275	92.592	0.661	92.592	92.312	92.973	0	-0.058669	-9.9401E-05	NaN	139.14	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9098000			30639	1441	22128	22294							0.003783131409136331
LIDPNTLQV	9	Unmodified	_LIDPNTLQV_					0	0	0		ENSG00000169251|ENST00000351193|NMD3;ENST00000439704.1_1_7:63369621-63370485:-|nuORF	ENSG00000169251|ENST00000351193|NMD3	ENSG00000169251|ENST00000351193|NMD3	MULTI-MSMS	A375_MHC_IP_R2	2	507.1866455078125	2	506.787307	1011.56006	-0.65859	-0.00033377	-0.029418	-1.4909E-05	-0.68801	-0.00034868	506.7872119766536	92.526	0.60876	93.265	92.886	93.495	0.73902					19	11	2	0	0	0	0.06083	1	35200	35200		60.074	14.374	1	1950900			30640	7396	22129	22295	29938	29938					0.05474323240434842
LIDQDARDLY	10	Unmodified	_LIDQDARDLY_					0	0	0		nc|ENSG00000182718|P07355-2|ANXA2;ENSG00000182718|ENST00000451270|ANXA2	nc|ENSG00000182718|P07355-2|ANXA2	nc|ENSG00000182718|P07355-2|ANXA2	MULTI-MSMS	A375_MHC_IP_R1	1	611.7091064453125	2	611.309135	1220.60372	-0.37134	-0.000227	0.12159	7.4332E-05	-0.24975	-0.00015267	611.3093013469219	58.179	0.40462	58.179	57.923	58.328	0					18	7	3	0	0	0	0.014124	1	20886	20886		89.609	43.869	1	7154100			30641	8430	22130	22296	29939	29939					0.002238879469132371
LIDQDARDLY	10	Unmodified	_LIDQDARDLY_					0	0	0		nc|ENSG00000182718|P07355-2|ANXA2;ENSG00000182718|ENST00000451270|ANXA2	nc|ENSG00000182718|P07355-2|ANXA2	nc|ENSG00000182718|P07355-2|ANXA2	MULTI-MSMS	A375_MHC_IP_R2	2	611.7090454101562	2	611.309135	1220.60372	-0.85007	-0.00051965	0.091264	5.5791E-05	-0.7588	-0.00046386	611.3090882325026	57.492	0.35624	58.241	58.019	58.375	0.74894					18	6	4	0	0	0	0.0031476	1	21716	21716		98.73	49.176	1	8750200			30642	8430	22130	22296	29940	29940					0.002238879469132371
LIDQFSRQL	9	Unmodified	_LIDQFSRQL_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	A375_MHC_IP_R2	2	374.2768859863281	3	373.876746	1118.60841	0.2	7.4775E-05	-0.5144	-0.00019232	-0.3144	-0.00011755	373.87667116725197	35.811	0.50819	36.574	36.233	36.741	0.76338					14	9	2	0	0	0	0.65246	1	13021	13021		15.248	15.248	1	2802300	+		30643	18428	22131	22297	29941	29941					0.053848168803369845
LIDSDELLDP	10	Unmodified	_LIDSDELLDP_					0	0	0		nc|ENSG00000005194|Q6FI81-3|CIAPIN1;ENSG00000005194|ENST00000394391|CIAPIN1;nc|ENSG00000005194|Q6FI81-2|CIAPIN1	nc|ENSG00000005194|Q6FI81-3|CIAPIN1	nc|ENSG00000005194|Q6FI81-3|CIAPIN1	MULTI-SECPEP	A375_MHC_IP_R1	1	564.6659545898438	2	565.284794	1128.55504	-0.36892	-0.00020855	2.2366	0.0012643	1.8676	0.0010558	565.787327242611	104.33	0.35528	104.33	104.18	104.54	0					9	6	2	0	0	0	0.61429	1	38317	38317		30.637	5.2372	1	821410			30644	887	22132	22298	29942	29942					-0.004100254128616143
LIDVGTGYY	9	Unmodified	_LIDVGTGYY_					0	0	0		ENST00000548984.1_1_12:53691573-53691735:+|nuORF;ENST00000552341.5_1_12:53691573-53693126:+|nuORF;ENST00000553171.1_1_12:53691669-53691972:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5;ENSG00000123349|ENST00000334478|PFDN5	ENST00000548984.1_1_12:53691573-53691735:+|nuORF	ENST00000548984.1_1_12:53691573-53691735:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.15301513671875	2	500.752933	999.491313	-0.45385	-0.00022727	0.20927	0.00010479	-0.24458	-0.00012247	500.7529669333933	64.725	1.2724	64.725	64.444	65.717	0					44	24	2	0	0	0	0.3054	2	23429	23414;23429		30.225	10.786	1	3888500			30645	13355	22133	22299	29943;29944	29944					-0.008453410592892396
LIDVGTGYY	9	Unmodified	_LIDVGTGYY_					0	0	0		ENST00000548984.1_1_12:53691573-53691735:+|nuORF;ENST00000552341.5_1_12:53691573-53693126:+|nuORF;ENST00000553171.1_1_12:53691669-53691972:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5;ENSG00000123349|ENST00000334478|PFDN5	ENST00000548984.1_1_12:53691573-53691735:+|nuORF	ENST00000548984.1_1_12:53691573-53691735:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.17822265625	2	500.752933	999.491313	-0.25325	-0.00012682	0.14352	7.187E-05	-0.10973	-5.4947E-05	500.75289134122215	88.853	1.1168	88.853	88.409	89.526	0					63	21	5	0	0	0	0.5339	1	32824	32824		18.135	3.5533	1	20322000			30646	13355	22133	22299	29945	29945					-0.008453410592892396
LIDVGTGYY	9	Unmodified	_LIDVGTGYY_					0	0	0		ENST00000548984.1_1_12:53691573-53691735:+|nuORF;ENST00000552341.5_1_12:53691573-53693126:+|nuORF;ENST00000553171.1_1_12:53691669-53691972:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5;ENSG00000123349|ENST00000334478|PFDN5	ENST00000548984.1_1_12:53691573-53691735:+|nuORF	ENST00000548984.1_1_12:53691573-53691735:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1000.8997192382812	1	1000.49859	999.491313	0.32279	0.00032295	-0.08466	-8.4702E-05	0.23813	0.00023825	1000.498424175258	88.835	2.3856	88.835	88.46	90.845	0					109	46	4	0	0	0	0.0095277	1	33159	33159		108	75.692	1	157750000			30647	13355	22133	22299	29946	29946					-0.008453410592892396
LIDVGTGYY	9	Unmodified	_LIDVGTGYY_					0	0	0		ENST00000548984.1_1_12:53691573-53691735:+|nuORF;ENST00000552341.5_1_12:53691573-53693126:+|nuORF;ENST00000553171.1_1_12:53691669-53691972:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5;ENSG00000123349|ENST00000334478|PFDN5	ENST00000548984.1_1_12:53691573-53691735:+|nuORF	ENST00000548984.1_1_12:53691573-53691735:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	501.1780090332031	2	500.752933	999.491313	-0.52339	-0.00026209	0.14036	7.0286E-05	-0.38303	-0.0001918	500.7528823335974	88.17	1.4647	88.902	88.57	90.035	0.7318					68	28	4	0	0	0	0.098973	1	33461	33461		50.855	16.753	1	28679000			30648	13355	22133	22299	29947	29947					-0.008453410592892396
LIDVGTGYY	9	Unmodified	_LIDVGTGYY_					0	0	0		ENST00000548984.1_1_12:53691573-53691735:+|nuORF;ENST00000552341.5_1_12:53691573-53693126:+|nuORF;ENST00000553171.1_1_12:53691669-53691972:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5;ENSG00000123349|ENST00000334478|PFDN5	ENST00000548984.1_1_12:53691573-53691735:+|nuORF	ENST00000548984.1_1_12:53691573-53691735:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	1000.49859	999.491313	0.076629	7.6667E-05	-0.19062	-0.00019071	-0.11399	-0.00011405	1000.4983055215814	88.184	2.4853	88.915	88.519	91.004	0.7318	0.040313	-4.4298E-05	NaN	108	120	48	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152500000			30649	13355	22133	22299							-0.008453410592892396
LIDVKGSVIK	10	Unmodified	_LIDVKGSVIK_					0	0	0			REV__nc|ENSG00000134333|P00338-4|LDHA	REV__nc|ENSG00000134333|P00338-4|LDHA	MULTI-MSMS	A375_MHC_IP_R1	1	358.2972412109375	3	357.897258	1070.66995	0.078064	2.7939E-05	-0.51972	-0.00018601	-0.44166	-0.00015807	357.897128785938	20.054	1.7803	20.054	19.571	21.352	0					128	34	7	0	0	0	0.32622	1	4992	4992		38.559	0.78748	1	1118900000	+		30650	27233	22134	22300	29948	29948					0.1374374857962266
LIDVKGSVIK	10	Unmodified	_LIDVKGSVIK_					0	0	0			REV__nc|ENSG00000134333|P00338-4|LDHA	REV__nc|ENSG00000134333|P00338-4|LDHA	MULTI-MSMS	A375_MHC_IP_R2	2	358.2969665527344	3	357.897258	1070.66995	-0.54657	-0.00019562	0.060806	2.1762E-05	-0.48577	-0.00017385	357.8972451800094	21.741	2.6457	22.361	20.66	23.306	0.61932					121	51	5	0	0	0	0.11281	1	6907	6907		60.899	7.5826	1	65488000	+		30651	27233	22134	22300	29949	29949					0.1374374857962266
LIDVKYQA	8	Unmodified	_LIDVKYQA_					0	0	0		tr|U7T2T8|U7T2T8_FUSNUTwo-componentsystem,sensorhistidinekinaseYesMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00411PE=4SV=1	tr|U7T2T8|U7T2T8_FUSNUTwo-componentsystem,sensorhistidinekinaseYesMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00411PE=4SV=1	tr|U7T2T8|U7T2T8_FUSNUTwo-componentsystem,sensorhistidinekinaseYesMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00411PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	475.6708679199219	2	475.271293	948.528032	-0.25905	-0.00012312	1.4622	0.00069495	1.2032	0.00057183	475.273026193349	70.215	0.66028	70.215	69.782	70.442	0					17	12	2	0	0	0	0.96266	1	25481	25481		11.64	0.81637	1	1548600			30652	29946	22135	22301	29950	29950					0.05170955557275647
LIDWDQIR	8	Unmodified	_LIDWDQIR_					0	0	0		ENSG00000080007|ENST00000370336|DDX43;nc|ENSG00000080007|Q9NXZ2-2|DDX43	ENSG00000080007|ENST00000370336|DDX43	ENSG00000080007|ENST00000370336|DDX43	MULTI-SECPEP	A375_MHC_IP_R1	1	529.1178588867188	2	529.785099	1057.55564	-0.80755	-0.00042783	0.10153	5.3789E-05	-0.70602	-0.00037404	529.7849285411963	90.678	0.35742	90.678	90.488	90.845	0					10	6	2	0	0	0	0.94587	1	33379	33379		13.508	13.508	1	1709500			30653	1707	22136	22302	29951	29951					0.029168588175025434
LIDWDQIR	8	Unmodified	_LIDWDQIR_					0	0	0		ENSG00000080007|ENST00000370336|DDX43;nc|ENSG00000080007|Q9NXZ2-2|DDX43	ENSG00000080007|ENST00000370336|DDX43	ENSG00000080007|ENST00000370336|DDX43	MULTI-MATCH	A375_MHC_IP_R2	2		2	529.785099	1057.55564	-0.48842	-0.00025876	0.2826	0.00014972	-0.20582	-0.00010904	529.7851398901087	89.862	0.51382	90.594	90.287	90.801	0.7318	-0.041854	4.3695E-05	NaN	13.508	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1160400			30654	1707	22136	22302							0.029168588175025434
LIDYPLQF	8	Unmodified	_LIDYPLQF_					0	0	0			REV__ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	REV__ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	MSMS	A375_MHC_IP_R1	1	504.6555480957031	2	504.773668	1007.53278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.409	1	64.409	63.909	64.909	0								0	0	0	0.16876	1	23302	23302		15.847	2.8047	1		+		30655	15463	22137	22303	29952	29952					0.02931839700056571
LIEAEHLEY	9	Unmodified	_LIEAEHLEY_					0	0	0			REV__nc|ENSG00000166265|Q96J86-3|CYYR1	REV__nc|ENSG00000166265|Q96J86-3|CYYR1	MSMS	A375_MHC_IP_R2	2	558.7176513671875	2	558.782222	1115.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.347	1	67.083	66.583	67.583	0.73631								0	0	0	0.15283	1	25140	25140		16.942	1.0951	1		+		30656	27334	22138	22304	29953	29953					-0.0032628448482228123
LIEATLYEL	9	Unmodified	_LIEATLYEL_					0	0	0			REV__ENST00000479986.1_1_6:27858584-27860837:-|nuORF	REV__ENST00000479986.1_1_6:27858584-27860837:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1064.986572265625	1	1064.5874	1063.58013	0.013898	1.4796E-05	-0.1769	-0.00018833	-0.163	-0.00017353	1064.5872768247875	128.95	0.30411	129.19	128.96	129.26	0.23946					6	5	2	0	0	0	0.3607	1	50686	50686		26.884	7.6267	1	10680000	+		30657	17795	22139	22305	29954	29954					0.05088074180366675
LIEATLYEL	9	Unmodified	_LIEATLYEL_					0	0	0			REV__ENST00000479986.1_1_6:27858584-27860837:-|nuORF	REV__ENST00000479986.1_1_6:27858584-27860837:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	1064.5874	1063.58013	0.020183	2.1487E-05	0.29159	0.00031042	0.31177	0.00033191	1064.58776795543	129.24	0.20416	129.24	129.09	129.3	0	0.02634	0.00026791	NaN	26.884	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11707000	+		30658	17795	22139	22305							0.05088074180366675
LIEAWLMM	8	Unmodified	_LIEAWLMM_					0	0	0			REV__ENST00000511127.1_1_4:145768248-145768308:+|nuORF	REV__ENST00000511127.1_1_4:145768248-145768308:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1921691894531	2	503.758649	1005.50275	-0.75354	-0.0003796	3.4253	0.0017255	2.6717	0.0013459	504.26242617111825	81.38	0.30073	82.123	81.979	82.279	0.74293					8	5	2	0	0	0	0.93416	1	30958	30958		14.582	0	1	1026600	+		30659	25611	22140	22306	29955	29955					0.00021441438843794458
LIEEDPPAP	9	Unmodified	_LIEEDPPAP_					0	0	0			REV__ENST00000360370.8_1_3:125726003-125734341:-|nuORF	REV__ENST00000360370.8_1_3:125726003-125734341:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	491.15069580078125	2	490.75039	979.486227	-0.50978	-0.00025018	0.52305	0.00025668	0.013264	6.5092E-06	490.75070601504206	85.582	2.5885	85.582	85.159	87.747	0					115	50	4	0	0	0	0.32899	2	31489	31489;31706		28.487	6.7402	1	12129000	+		30660	23889	22141	22307	29956;29957	29956					-0.004336449219181304
LIEEDPPAP	9	Unmodified	_LIEEDPPAP_					0	0	0			REV__ENST00000360370.8_1_3:125726003-125734341:-|nuORF	REV__ENST00000360370.8_1_3:125726003-125734341:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	491.150390625	2	490.75039	979.486227	-0.40167	-0.00019712	0.41924	0.00020574	0.01757	8.6225E-06	490.7506157868249	84.796	2.5445	85.532	85.018	87.563	0.73601					104	49	3	0	0	0	0.32899	2	32382	32382;32601		28.487	5.3384	1	10470000	+		30661	23889	22141	22307	29958;29959	29958					-0.004336449219181304
LIEEDPPAP	9	Unmodified	_LIEEDPPAP_					0	0	0			REV__ENST00000360370.8_1_3:125726003-125734341:-|nuORF	REV__ENST00000360370.8_1_3:125726003-125734341:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	490.75039	979.486227	-0.40167	-0.00019712	0.41924	0.00020574	0.01757	8.6225E-06	490.7506157868249	84.796	2.5445	85.532	85.018	87.563	0.73601	-0.02522	-4.7826E-05	NaN	28.487	104	49	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10470000	+		30662	23889	22141	22307							-0.004336449219181304
LIEEEYLRRLF	11	Unmodified	_LIEEEYLRRLF_					0	0	0			REV__ENSG00000205426|ENST00000327741|KRT81	REV__ENSG00000205426|ENST00000327741|KRT81	MSMS	A375_MHC_IP_R2	2	740.8863525390625	2	740.911559	1479.80856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.49	1	127.75	127.25	128.25	0.26593								0	0	0	0.16302	1	50003	50003		2.9952	0	1		+		30663	22574	22142	22308	29960	29960					0.08785246757247478
LIEEPMAAAI	10	Unmodified	_LIEEPMAAAI_					0	0	0		tr|U7STG8|U7STG8_FUSNUCellshape-determiningproteinMreBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mreBPE=3SV=1	tr|U7STG8|U7STG8_FUSNUCellshape-determiningproteinMreBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mreBPE=3SV=1	tr|U7STG8|U7STG8_FUSNUCellshape-determiningproteinMreBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mreBPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	528.6959838867188	2	529.283543	1056.55253	-0.34328	-0.00018169	2.3165	0.0012261	1.9733	0.0010444	529.7861425261596	71.66	0.40034	71.66	71.465	71.866	0					11	7	2	0	0	0	0.69172	1	26025	26025		32.305	17.467	1	7157300			30664	29690	22143	22309	29961	29961					0.026518476484852727
LIEERINL	8	Unmodified	_LIEERINL_					0	0	0		nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L;ENSG00000157060|ENST00000367547|SHCBP1L	nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	MULTI-SECPEP	A375_MHC_IP_R2	2	500.694580078125	2	500.295299	998.576045	-0.50256	-0.00025143	0.089656	4.4854E-05	-0.41291	-0.00020658	500.29534906563435	63.883	0.76308	64.623	64.241	65.004	0.74022					20	14	2	0	0	0	0.92636	1	24184	24184		11.64	0	1	3442300			30665	6225	22144	22310	29962	29962					0.07670029477310436
LIEFGMIPEF	10	Unmodified	_LIEFGMIPEF_					0	0	0		ENST00000560166.1_1_15:65447071-65448095:-|nuORF;ENSG00000166855|ENST00000300107|CLPX	ENST00000560166.1_1_15:65447071-65448095:-|nuORF	ENST00000560166.1_1_15:65447071-65448095:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	598.2305908203125	2	598.307018	1194.59948	-0.84297	-0.00050435	1.9047	0.0011396	1.0618	0.00063526	598.3079423829055	60.476	0.35791	61.221	61.006	61.364	0.74503					9	6	2	0	0	0	0.58828	1	22837	22837		21.747	2.4897	1	1038100			30666	7120	22145	22311	29963	29963					0.009967071996243249
LIEFYEEPHV	10	Unmodified	_LIEFYEEPHV_					0	0	0			REV__tr|U7SUC9|U7SUC9_FUSNUDUF3601domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01380PE=4SV=1	REV__tr|U7SUC9|U7SUC9_FUSNUDUF3601domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01380PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	638.7149047851562	2	638.316428	1274.6183	-0.95329	-0.0006085	-1.5712	-0.0010029	-2.5245	-0.0016114	638.3154372400883	133.53	0.30605	133.53	133.41	133.71	0					7	5	2	0	0	0	0.92957	1	51531	51531		6.2058	1.8765	1	2789700	+		30667	28547	22146	22312	29964	29964					-0.00802039904965568
LIEHELSI	8	Unmodified	_LIEHELSI_					0	0	0			REV__ENSG00000168002|ENST00000301788|POLR2G	REV__ENSG00000168002|ENST00000301788|POLR2G	MULTI-SECPEP	A375_MHC_IP_R1	1	477.6689147949219	2	477.26875	952.522947	-0.50068	-0.00023896	0.53625	0.00025594	0.03557	1.6977E-05	477.2689939296375	60.337	0.56007	60.337	60.109	60.669	0					14	10	2	0	0	0	0.85124	1	21730	21730		26.341	6.9023	1	3389100	+		30668	20815	22147	22313	29965	29965					0.04478651694671498
LIEKSHEME	9	Unmodified	_LIEKSHEME_					0	0	0		ENSG00000137831|ENST00000322954|UACA;nc|ENSG00000137831|Q9BZF9-2|UACA	ENSG00000137831|ENST00000322954|UACA	ENSG00000137831|ENST00000322954|UACA	MULTI-SECPEP	A375_MHC_IP_R1	1	371.9599914550781	3	372.51823	1114.53286	0.59675	0.0002223	-1.6529	-0.00061573	-1.0561	-0.00039343	372.85240021478256	21.479	0.45741	21.479	21.403	21.86	0					9	8	2	0	0	0	0.78348	1	5702	5702		4.897	3.0528	1	652270			30669	4925	22148	22314	29966	29966					-0.019825283622594725
LIEKSRVVY	9	Unmodified	_LIEKSRVVY_					0	0	0		nc|ENSG00000174527|Q8N1T3-3|MYO1H;nc|ENSG00000174527|Q8N1T3|MYO1H;ENSG00000174527|ENST00000310903|MYO1H	nc|ENSG00000174527|Q8N1T3-3|MYO1H	nc|ENSG00000174527|Q8N1T3-3|MYO1H	MULTI-MSMS	A375_MHC_IP_R2	2	370.6098937988281	3	369.557125	1105.64954	-0.032837	-1.2135E-05	0.10743	3.9702E-05	0.074593	2.7566E-05	369.55715016498243	52.03	1.3709	52.783	52.169	53.54	0.75225					61	26	4	0	0	0	0.6656	1	19659	19659		10.151	0.6066	1	25195000			30670	7890	22149	22315	29967	29967					0.10094577919812764
LIENDAEKDY	10	Unmodified	_LIENDAEKDY_					0	0	0		nc|ENSG00000006611|Q9Y6N9-3|USH1C;nc|ENSG00000006611|Q9Y6N9-4|USH1C;nc|ENSG00000006611|Q9Y6N9|USH1C;ENSG00000006611|ENST00000005226|USH1C	nc|ENSG00000006611|Q9Y6N9-3|USH1C	nc|ENSG00000006611|Q9Y6N9-3|USH1C	MULTI-MSMS	A375_MHC_IP_R2	2	605.7530517578125	2	605.285325	1208.5561	-0.57607	-0.00034868	0.62425	0.00037785	0.048182	2.9164E-05	605.2857840910784	62.092	2.2809	62.834	62.37	64.651	0.74263					103	44	4	0	0	0	0.62155	1	23661	23661		19.257	2.1441	1	11132000			30671	921	22150	22316	29968	29968					-0.03983811043940477
LIENDAEKDY	10	Unmodified	_LIENDAEKDY_					0	0	0		nc|ENSG00000006611|Q9Y6N9-3|USH1C;nc|ENSG00000006611|Q9Y6N9-4|USH1C;nc|ENSG00000006611|Q9Y6N9|USH1C;ENSG00000006611|ENST00000005226|USH1C	nc|ENSG00000006611|Q9Y6N9-3|USH1C	nc|ENSG00000006611|Q9Y6N9-3|USH1C	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	605.285325	1208.5561	-0.24693	-0.00014946	0.80939	0.00048991	0.56246	0.00034045	605.2858862721515	62.673	1.9923	62.673	62.3	64.292	0	-0.080856	0.00012288	NaN	19.257	95	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10937000			30672	921	22150	22316							-0.03983811043940477
LIEPHYQPWSY	11	Unmodified	_LIEPHYQPWSY_					0	0	0		nc|ENSG00000198863|Q96C34-2|RUNDC1;ENSG00000198863|ENST00000361677|RUNDC1	nc|ENSG00000198863|Q96C34-2|RUNDC1	nc|ENSG00000198863|Q96C34-2|RUNDC1	MULTI-MSMS	A375_MHC_IP_R2	2	717.248291015625	2	716.848427	1431.6823	-0.65143	-0.00046698	0.12649	9.0675E-05	-0.52494	-0.0003763	716.8484304339073	84.629	0.5062	85.365	85.171	85.677	0.73602					13	9	2	0	0	0	0.049456	1	32197	32197		79.427	61.054	1	1848000			30673	9355	22151	22317	29969	29969					-0.016272597480110562
LIEQCSRY	8	Unmodified	_LIEQCSRY_					0	0	0			REV__ENSG00000100564|ENST00000216452|PIGH	REV__ENSG00000100564|ENST00000216452|PIGH	MSMS	A375_MHC_IP_R1	1	506.1971130371094	2	506.250034	1010.48552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.1	1	105.1	104.6	105.6	0								0	0	0	0.16876	1	38586	38586		19.439	4.8573	1		+		30674	17100	22152	22318	29970	29970					-0.019307628426076917
LIEQEKQAL	9	Unmodified	_LIEQEKQAL_					0	0	0			REV__nc|ENSG00000126001|Q9BV73-2|CEP250	REV__nc|ENSG00000126001|Q9BV73-2|CEP250	MULTI-SECPEP	A375_MHC_IP_R2	2	536.56494140625	2	536.305864	1070.59717	-0.74123	-0.00039753	-2.4248	-0.0013004	-3.166	-0.001698	536.3044047997726	47.8	0.45472	48.561	48.378	48.833	0.76127					13	8	2	0	0	0	0.65246	1	17923	17923		10.824	0	1	1206800	+		30675	18376	22153	22319	29971	29971					0.06469994786198185
LIERLLLP	8	Unmodified	_LIERLLLP_					0	0	0			REV__nc|ENSG00000163947|Q9NR81-4|ARHGEF3	REV__nc|ENSG00000163947|Q9NR81-4|ARHGEF3	MULTI-SECPEP	A375_MHC_IP_R1	1	484.22186279296875	2	483.820953	965.627353	-0.28476	-0.00013777	1.1945	0.00057792	0.90973	0.00044015	483.8217641309396	79.616	0.71785	79.616	79.265	79.983	0					19	13	2	0	0	0	0.92636	1	29070	29070		23.148	6.2061	1	2390400	+		30676	20430	22154	22320	29972	29972					0.1431639824204467
LIERLLLP	8	Unmodified	_LIERLLLP_					0	0	0			REV__nc|ENSG00000163947|Q9NR81-4|ARHGEF3	REV__nc|ENSG00000163947|Q9NR81-4|ARHGEF3	MULTI-MSMS	A375_MHC_IP_R2	2	484.2204895019531	2	483.820953	965.627353	-0.53137	-0.00025709	0.16712	8.0855E-05	-0.36425	-0.00017623	483.82103250803965	78.617	0.40585	79.362	79.134	79.54	0.74474					13	7	2	0	0	0	0.73946	1	29859	29859		23.148	5.0134	1	2365700	+		30677	20430	22154	22320	29973	29973					0.1431639824204467
LIERLLLP	8	Unmodified	_LIERLLLP_					0	0	0			REV__nc|ENSG00000163947|Q9NR81-4|ARHGEF3	REV__nc|ENSG00000163947|Q9NR81-4|ARHGEF3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	483.820953	965.627353	-0.53137	-0.00025709	0.16712	8.0855E-05	-0.36425	-0.00017623	483.82103250803965	78.617	0.40585	79.362	79.134	79.54	0.74474	-0.12733	-0.000189	NaN	23.148	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2365700	+		30678	20430	22154	22320							0.1431639824204467
LIESSRFL	8	Unmodified	_LIESSRFL_					0	0	0			REV__nc|ENSG00000105792|A5D8W1-2|CFAP69	REV__nc|ENSG00000105792|A5D8W1-2|CFAP69	MULTI-SECPEP	A375_MHC_IP_R2	2	482.1630859375	2	482.776742	963.538931	-0.6473	-0.0003125	0.15456	7.4618E-05	-0.49273	-0.00023788	482.7766716849317	106.78	0.60849	107.54	107.24	107.85	0.75977					19	11	2	0	0	0	0.8824	1	40318	40318		30.225	6.2042	1	2655200	+		30679	17410	22155	22321	29974	29974					0.05570357931560466
LIEWGNNPI	9	Unmodified	_LIEWGNNPI_					0	0	0		ENSG00000106236|ENST00000265634|NPTX2	ENSG00000106236|ENST00000265634|NPTX2	ENSG00000106236|ENST00000265634|NPTX2	MULTI-MSMS	A375_MHC_IP_R2	2	528.6978149414062	2	528.279649	1054.54475	-0.45452	-0.00024011	-3.5238	-0.0018616	-3.9784	-0.0021017	528.7772234233838	78.737	0.30504	79.482	79.337	79.642	0.74474					8	5	2	0	0	0	0.2487	1	29850	29850		34.402	7.5181	1	761180			30680	2673	22156	22322	29975	29975					0.0196545644323578
LIFAYNRW	8	Unmodified	_LIFAYNRW_					0	0	0			REV__ENST00000251636.9_1_5:54566241-54566439:-|nuORF	REV__ENST00000251636.9_1_5:54566241-54566439:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	542.1934814453125	2	541.792727	1081.5709	-0.93273	-0.00050535	1.3823	0.00074893	0.4496	0.00024359	541.7935848740391	55.73	0.45662	56.48	56.237	56.693	0.75015					14	8	2	0	0	0	0.94587	1	21101	21101		26.341	26.341	1	2055500	+		30681	23126	22157	22323	29976	29976					0.03337770405369156
LIFCLLSQK	9	Unmodified	_LIFCLLSQK_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-SECPEP	A375_MHC_IP_R1	1	532.21875	2	532.81227	1063.60999	-0.48137	-0.00025648	1.8274	0.00097368	1.3461	0.0007172	533.3165002616082	71.546	1.4242	71.546	70.341	71.765	0					32	27	2	0	0	0	0.71541	1	25690	25690		11.64	1.5664	1	6985300			30682	9241	22158	22324	29977	29977					0.08072734644724733
LIFEPNKVI	9	Unmodified	_LIFEPNKVI_					0	0	0			REV__nc|ENSG00000135773|O14815-2|CAPN9	REV__nc|ENSG00000135773|O14815-2|CAPN9	MULTI-SECPEP	A375_MHC_IP_R2	2	536.7318115234375	2	536.823692	1071.63283	-0.74956	-0.00040238	0.027166	1.4583E-05	-0.7224	-0.0003878	536.8239254296293	101.06	0.46333	101.83	101.55	102.01	0.76428					12	8	2	0	0	0	0.72623	1	38371	38371		19.257	0	1	1422600	+		30683	18883	22159	22325	29978	29978					0.09988077033835907
LIFEPNKVI	9	Unmodified	_LIFEPNKVI_					0	0	0			REV__nc|ENSG00000135773|O14815-2|CAPN9	REV__nc|ENSG00000135773|O14815-2|CAPN9	MULTI-MATCH	A375_MHC_IP_R1	1		2	536.823692	1071.63283	-0.64364	-0.00034552	0.11304	6.0683E-05	-0.53059	-0.00028484	536.8235091263253	102.03	0.4061	102.03	101.75	102.15	0	0.09906	3.4889E-05	NaN	25.399	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1688400	+		30684	18883	22159	22325							0.09988077033835907
LIFFYWLFHSC	11	Unmodified	_LIFFYWLFHSC_					0	0	0		ENSG00000185000|ENST00000528718|DGAT1;ENST00000524965.5_1_8:145540848-145542370:-|nuORF;ENST00000527885.1_1_8:145540848-145541192:-|nuORF	ENSG00000185000|ENST00000528718|DGAT1	ENSG00000185000|ENST00000528718|DGAT1	MSMS	A375_MHC_IP_R1	1	492.4775695800781	3	492.577531	1474.71076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.26	1	45.26	44.76	45.76	0								0	0	0	0.16297	1	15831	15831		1.3296	0	1				30685	8629	22160	22326	29979	29979					-0.0076023337242077105
LIFFYWLFHSC	11	Unmodified	_LIFFYWLFHSC_					0	0	0		ENSG00000185000|ENST00000528718|DGAT1;ENST00000524965.5_1_8:145540848-145542370:-|nuORF;ENST00000527885.1_1_8:145540848-145541192:-|nuORF	ENSG00000185000|ENST00000528718|DGAT1	ENSG00000185000|ENST00000528718|DGAT1	MSMS	A375_MHC_IP_R2	2	492.4772644042969	3	492.577531	1474.71076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.545	1	45.314	44.814	45.814	0.7691								0	0	0	0.16249	1	16629	16629		4.7159	4.21	1				30686	8629	22160	22326	29980	29980					-0.0076023337242077105
LIFIFLNWRWK	11	Unmodified	_LIFIFLNWRWK_					0	0	0			REV__nc|ENSG00000162989|P48549-2|KCNJ3	REV__nc|ENSG00000162989|P48549-2|KCNJ3	MULTI-MSMS	A375_MHC_IP_R1	1	768.8787841796875	2	768.447914	1534.88128	-0.83547	-0.00064202	-0.056248	-4.3224E-05	-0.89172	-0.00068524	768.4477118770202	148.82	1.9123	148.82	147.78	149.69	0					119	45	4	0	0	0	0.73934	5	56615	56615;56662;56826;56870;57017		0	0	1	637140	+		30687	20326	22161	22327	29981;29982;29983;29984;29985	29981					0.13523045341298712
LIFIFLNWRWK	11	Unmodified	_LIFIFLNWRWK_					0	0	0			REV__nc|ENSG00000162989|P48549-2|KCNJ3	REV__nc|ENSG00000162989|P48549-2|KCNJ3	MULTI-MSMS	A375_MHC_IP_R2	2	768.8468627929688	2	768.447914	1534.88128	-0.73485	-0.00056469	-0.076488	-5.8777E-05	-0.81134	-0.00062347	768.447665765311	148.9	1.8546	148.92	147.77	149.62	0.018707					150	53	4	0	0	0	0.73934	6	57552	57552;57572;57749;57779;57945;57979		0	0	1	638340	+		30688	20326	22161	22327	29986;29987;29988;29989;29990;29991	29986					0.13523045341298712
LIFIFLNWRWK	11	Unmodified	_LIFIFLNWRWK_					0	0	0			REV__nc|ENSG00000162989|P48549-2|KCNJ3	REV__nc|ENSG00000162989|P48549-2|KCNJ3	MULTI-SECPEP	A375_MHC_IP_R2	2	768.8468627929688	2	768.447914	1534.88128	-0.73485	-0.00056469	-0.076488	-5.8777E-05	-0.81134	-0.00062347	768.447665765311	148.9	1.8546	148.92	147.77	149.62	0.018707					150	53	4	0	0	0	1.0015	1	57945	57945		0	0	1	638340	+		30689	20326	22161	22327	29992	29992					0.13523045341298712
LIFKIIMTV	9	Unmodified	_LIFKIIMTV_					0	0	0		nc|ENSG00000109572|P51790-4|CLCN3;nc|ENSG00000109572|P51790-5|CLCN3;ENSG00000109572|ENST00000513761|CLCN3;nc|ENSG00000109572|P51790-2|CLCN3	nc|ENSG00000109572|P51790-4|CLCN3	nc|ENSG00000109572|P51790-4|CLCN3	MSMS	A375_MHC_IP_R2	2	359.9340515136719	3	359.896201	1076.66677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.289	1	19.893	19.393	20.393	0.60308								0	0	0	0.15486	1	5910	5910		2.2828	0	1				30690	2876	22162	22328	29993	29993					0.13150782201250877
LIFKIIMTV	9	Unmodified	_LIFKIIMTV_					0	0	0		nc|ENSG00000109572|P51790-4|CLCN3;nc|ENSG00000109572|P51790-5|CLCN3;ENSG00000109572|ENST00000513761|CLCN3;nc|ENSG00000109572|P51790-2|CLCN3	nc|ENSG00000109572|P51790-4|CLCN3	nc|ENSG00000109572|P51790-4|CLCN3	MSMS	A375_MHC_IP_R2	2	359.9340515136719	3	359.896201	1076.66677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.368	1	22.988	22.488	23.488	0.61932								0	0	0	0.15486	1	7101	7101		4.5289	1.7937	1				30691	2876	22162	22328	29994	29994					0.13150782201250877
LIFLDTTL	8	Unmodified	_LIFLDTTL_					0	0	0		nc|ENSG00000112541|A8K010|LINC00473;ENST00000455853.1_1_6:166353685-166401023:-|nuORF	nc|ENSG00000112541|A8K010|LINC00473	nc|ENSG00000112541|A8K010|LINC00473	MULTI-SECPEP	A375_MHC_IP_R1	1	467.6736145019531	2	468.276044	934.537535	0.25192	0.00011797	1.8375	0.00086044	2.0894	0.00097841	468.27637510007645	69.493	0.20274	69.493	69.377	69.579	0					5	3	2	0	0	0	0.97144	1	25218	25218		9.3474	0	1	683900			30692	12121	22163	22329	29995	29995					0.06764723842809417
LIFLLCRQAS	10	Unmodified	_LIFLLCRQAS_					0	0	0			REV__ENST00000338785.7_1_21:38885904-38886156:+|nuORF	REV__ENST00000338785.7_1_21:38885904-38886156:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	582.7351684570312	2	582.333901	1162.65325	-0.4332	-0.00025227	0.81235	0.00047306	0.37915	0.00022079	582.3349275772055	128.77	1.3138	129.01	128.76	130.07	0.23947					70	25	4	0	0	0	0.72078	1	50819	50819		2.9952	0.69251	1	39533000	+		30693	23704	22164	22330	29996	29996					0.0784292442201604
LIFPATWLLD	10	Unmodified	_LIFPATWLLD_					0	0	0		ENSG00000162769|ENST00000366971|FLVCR1	ENSG00000162769|ENST00000366971|FLVCR1	ENSG00000162769|ENST00000366971|FLVCR1	MULTI-SECPEP	A375_MHC_IP_R2	2	595.2036743164062	2	594.8368	1187.65905	-0.55054	-0.00032748	-2.3934	-0.0014237	-2.9439	-0.0017512	594.8358875766539	83.06	0.3036	83.8	83.694	83.998	0.73962					7	5	2	0	0	0	0.92957	1	31584	31584		3.2813	2.2098	1	1272700			30694	6591	22165	22331	29997	29997					0.07272346205309077
LIFQKLISR	9	Unmodified	_LIFQKLISR_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	A375_MHC_IP_R1	1	373.6409606933594	3	373.241248	1116.70191	0.0065647	2.4502E-06	-0.30468	-0.00011372	-0.29812	-0.00011127	373.2410776448695	26.304	0.55827	26.304	26.118	26.677	0					22	10	3	0	0	0	0.66474	1	7831	7831		10.151	1.7063	1	8291800			30695	5618	22166	22332	29998	29998					0.1482316105341397
LIFSSQRRLI	10	Unmodified	_LIFSSQRRLI_					0	0	0		ENST00000482975.6_2_2:70520113-70520242:-|nuORF	ENST00000482975.6_2_2:70520113-70520242:-|nuORF	ENST00000482975.6_2_2:70520113-70520242:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	411.98712158203125	3	411.587307	1231.74009	-0.26127	-0.00010754	0.036496	1.5021E-05	-0.22478	-9.2516E-05	411.5872591299715	41.546	0.51078	41.546	41.215	41.725	0					16	9	2	0	0	0	0.28986	1	14345	14345		40.725	5.6452	1	3865300			30696	12535	22167	22333	29999	29999					0.13349046968096445
LIFYFSFCFLR	11	Unmodified	_LIFYFSFCFLR_					0	0	0			REV__ENST00000510740.1_1_5:36666378-36666552:-|nuORF	REV__ENST00000510740.1_1_5:36666378-36666552:-|nuORF	MSMS	A375_MHC_IP_R1	1	728.3289184570312	2	728.378309	1454.74206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.7	1	105.7	105.2	106.2	0								0	0	0	0.1624	1	38805	38805		6.2058	0	1		+		30697	25606	22168	22334	30000	30000					0.03288339661662576
LIFYIENMQYL	11	Unmodified	_LIFYIENMQYL_					0	0	0		ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	MSMS	A375_MHC_IP_R2	2	482.85406494140625	3	482.916101	1445.72647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.829	1	81.573	81.073	82.073	0.74474								0	0	0	0.15902	1	30691	30691		11.518	4.8944	1				30698	6076	22169	22335	30001	30001					0.02144008353980098
LIFYLAYM	8	Unmodified	_LIFYLAYM_					0	0	0			REV__nc|ENSG00000164300|Q86VE9-3|SERINC5	REV__nc|ENSG00000164300|Q86VE9-3|SERINC5	MSMS	A375_MHC_IP_R2	2	517.23095703125	2	517.274989	1032.53543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.913	1	80.658	80.158	81.158	0.74474								0	0	0	0.16876	1	30336	30336		17.087	2.5049	1		+		30699	20477	22170	22336	30002	30002					0.020459718333313504
LIGAGHSS	8	Unmodified	_LIGAGHSS_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-SECPEP	A375_MHC_IP_R1	1	740.7595825195312	1	741.388979	740.381703	-0.35122	-0.00026039	-0.99718	-0.0007393	-1.3484	-0.00099969	741.3880197753593	106.43	1.1768	106.43	105.96	107.14	0					45	22	3	0	0	0	0.972	1	38903	38903		2.8892	0	1	19268000			30700	3290	22171	22337	30003	30003					0.0011269811204783764
LIGAGHSS	8	Unmodified	_LIGAGHSS_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MATCH	A375_MHC_IP_R2	2		1	741.388979	740.381703	-0.8512	-0.00063107	-1.071	-0.00079405	-1.9222	-0.0014251	741.3880538997693	105.87	1.5791	106.63	105.97	107.55	0.75977	0.098616	-2.0332E-05	NaN	2.8892	51	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13186000			30701	3290	22171	22337							0.0011269811204783764
LIGAGYST	8	Unmodified	_LIGAGYST_					0	0	0		ENSG00000135250|ENST00000393651|SRPK2;nc|ENSG00000135250|P78362|SRPK2	ENSG00000135250|ENST00000393651|SRPK2	ENSG00000135250|ENST00000393651|SRPK2	MSMS	A375_MHC_IP_R2	2	391.20172119140625	2	391.208161	780.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.5	1	134.64	134.14	135.14	0.13901								0	0	0	0.16876	1	52908	52908		5.7604	0.52976	1				30702	4660	22172	22338	30004	30004					0.0027844905199572167
LIGAIYNYV	9	Unmodified	_LIGAIYNYV_					0	0	0			REV__tr|U7T5D0|U7T5D0_FUSNUMembrane-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00525PE=4SV=1	REV__tr|U7T5D0|U7T5D0_FUSNUMembrane-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00525PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	513.6867065429688	2	513.286943	1024.55933	-0.72815	-0.00037375	0.11199	5.7485E-05	-0.61615	-0.00031626	513.2872050195223	131.81	0.30292	131.81	131.68	131.98	0					7	5	2	0	0	0	0.77834	1	50854	50854		4.756	4.756	1	2952500	+		30703	28824	22173	22339	30005	30005					0.04803528591378381
LIGEKISEL	9	Unmodified	_LIGEKISEL_					0	0	0			REV__ARAP2|p.G1434E|1|0.07|ENSG00000047365|chr4:36092005-36092005|C/T|missense_variant	REV__ARAP2|p.G1434E|1|0.07|ENSG00000047365|chr4:36092005-36092005|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	501.23626708984375	2	501.297507	1000.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.548	1	92.282	91.782	92.782	0.7345								0	0	0	0.11268	1	34821	34821		38.176	0.20157	1		+		30704	15430	22174	22340	30006	30006					0.08019493900224006
LIGGERIGV	9	Unmodified	_LIGGERIGV_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	MULTI-SECPEP	A375_MHC_IP_R1	1	457.67657470703125	2	457.276909	912.539266	-0.29946	-0.00013694	0.22908	0.00010475	-0.070383	-3.2184E-05	457.27697609458943	64.709	0.50997	64.709	64.444	64.954	0					18	9	2	0	0	0	0.20094	1	23388	23388		36.044	11.37	1	5440600	+		30705	17160	22175	22341	30007	30007					0.07949777651424483
LIGGERIGV	9	Unmodified	_LIGGERIGV_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	457.276909	912.539266	-0.22748	-0.00010402	-0.36027	-0.00016474	-0.58775	-0.00026876	457.2767081547395	63.593	0.61053	64.333	64.038	64.648	0.74022	-0.18761	-0.00032663	NaN	36.044	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4639000	+		30706	17160	22175	22341							0.07949777651424483
LIGGYHLIL	9	Unmodified	_LIGGYHLIL_					0	0	0			REV__nc|ENSG00000175581|Q96GC5-3|MRPL48	REV__nc|ENSG00000175581|Q96GC5-3|MRPL48	MULTI-MSMS	A375_MHC_IP_R1	1	500.20489501953125	2	499.805303	997.596052	0.090835	4.54E-05	-0.36786	-0.00018386	-0.27703	-0.00013846	499.80519341175824	114.34	1.7761	114.34	114.11	115.89	0					71	34	3	0	0	0	0.12743	1	42175	42175		45.75	0	1	14349000	+		30707	27372	22176	22342	30008	30008					0.09715825207945272
LIGGYHLIL	9	Unmodified	_LIGGYHLIL_					0	0	0			REV__nc|ENSG00000175581|Q96GC5-3|MRPL48	REV__nc|ENSG00000175581|Q96GC5-3|MRPL48	MULTI-MSMS	A375_MHC_IP_R2	2	500.2043151855469	2	499.805303	997.596052	-0.34327	-0.00017157	0.03764	1.8813E-05	-0.30563	-0.00015276	499.80525497722385	113.36	1.723	114.07	113.77	115.49	0.70984					61	33	3	0	0	0	0.042019	1	42700	42700		67.413	0	1	11854000	+		30708	27372	22176	22342	30009	30009					0.09715825207945272
LIGIKMKKVF	10	Unmodified	_LIGIKMKKVF_					0	0	0			REV__ENST00000291232.4_2_22:42318247-42318586:-|nuORF	REV__ENST00000291232.4_2_22:42318247-42318586:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	393.61566162109375	3	392.92275	1175.74642	-0.3254	-0.00012786	0.99648	0.00039154	0.67108	0.00026368	392.923093379929	55.887	0.30566	56.637	56.388	56.693	0.75015					8	5	2	0	0	0	0.94859	1	21080	21080		0	0	1	1477900	+		30709	23363	22177	22343	30010	30010					0.16557848875231684
LIGKVYTAQNP	11	Unmodified	_LIGKVYTAQNP_					0	0	0		ENST00000524261.1_1_8:42040235-42040316:-|nuORF;nc|ENSG00000104368|P00750-2|PLAT;PLAT|p.I345Hfs*44|1|0.11|ENSG00000104368|chr8:42180543-42180544|-/C|frameshift_variant;nc|ENSG00000104368|P00750-4|PLAT;nc|ENSG00000104368|P00750-3|PLAT;ENSG00000104368|ENST00000220809|PLAT	ENST00000524261.1_1_8:42040235-42040316:-|nuORF	ENST00000524261.1_1_8:42040235-42040316:-|nuORF	MSMS	A375_MHC_IP_R1	1	602.73876953125	2	602.340238	1202.66592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.649	1	63.649	63.149	64.149	0								0	0	0	0.15694	1	23013	23013		16.149	0	1				30710	2504	22178	22344	30011	30011					0.07269659085886815
LIGLRLRRE	9	Unmodified	_LIGLRLRRE_					0	0	0		ENSG00000171596|ENST00000305141|NMUR1	ENSG00000171596|ENST00000305141|NMUR1	ENSG00000171596|ENST00000305141|NMUR1	MULTI-MSMS	A375_MHC_IP_R2	2	376.3119812011719	3	375.912013	1124.71421	0.1766	6.6387E-05	-0.10816	-4.0658E-05	0.068444	2.5729E-05	375.91187897287267	39.41	0.35545	40.185	39.914	40.269	0.77451					17	6	3	0	0	0	0.70902	1	14569	14569		6.1918	1.4759	1	4678000			30711	7618	22179	22345	30012	30012					0.15684197516452514
LIGQTCDGV	9	Unmodified	_LIGQTCDGV_					0	0	0			REV__ENST00000585057.5_3_3:127783873-127787552:-|nuORF	REV__ENST00000585057.5_3_3:127783873-127787552:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	453.6246337890625	2	453.223485	904.432418	-0.032898	-1.491E-05	2.2729	0.0010301	2.24	0.0010152	453.224909656784	94.352	0.75921	95.096	94.667	95.426	0.74474					21	14	2	0	0	0	0.17338	2	35836	35836;35874		39.95	3.9055	1	1804900	+		30712	26373	22180	22346	30013;30014	30013					-0.02362140625257325
LIGQTCDGV	9	Unmodified	_LIGQTCDGV_					0	0	0			REV__ENST00000585057.5_3_3:127783873-127787552:-|nuORF	REV__ENST00000585057.5_3_3:127783873-127787552:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	453.6246337890625	2	453.223485	904.432418	-0.032898	-1.491E-05	2.2729	0.0010301	2.24	0.0010152	453.224909656784	94.352	0.75921	95.096	94.667	95.426	0.74474					21	14	2	0	0	0	0.41434	1	35836	35836		39.95	3.9055	1	1804900	+		30713	26373	22180	22346	30015	30015					-0.02362140625257325
LIGQTCDGV	9	Unmodified	_LIGQTCDGV_					0	0	0			REV__ENST00000585057.5_3_3:127783873-127787552:-|nuORF	REV__ENST00000585057.5_3_3:127783873-127787552:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	453.223485	904.432418	-0.31779	-0.00014403	2.22	0.0010062	1.9022	0.00086214	453.22488957672357	95.157	0.66155	95.157	94.853	95.515	0	0.030155	-2.1688E-05	NaN	39.95	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1448800	+		30714	26373	22180	22346							-0.02362140625257325
LIGRCRDVDM	10	Unmodified	_LIGRCRDVDM_					0	0	0			REV__ENST00000371711.4_1_20:48256308-48257087:-|nuORF	REV__ENST00000371711.4_1_20:48256308-48257087:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	589.1940307617188	2	589.29445	1176.57435	-0.51037	-0.00030076	-1.0264	-0.00060485	-1.5368	-0.00090561	589.2940027713599	104.41	1.067	105.17	104.5	105.56	0.76308					26	20	2	0	0	0	0.66712	1	39424	39424		15.847	5.0233	1	4165800	+		30715	24049	22181	22347	30016	30016					-0.006876708745721771
LIGRLELSL	9	Unmodified	_LIGRLELSL_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-SECPEP	A375_MHC_IP_R1	1	507.54290771484375	2	507.321317	1012.62808	-0.27276	-0.00013838	0.76641	0.00038882	0.49365	0.00025044	507.3213781830769	81.986	0.3545	81.986	81.809	82.163	0					8	6	2	0	0	0	0.65246	1	30006	30006		6.7232	0	1	959710			30716	1419	22182	22348	30017	30017					0.12227192891100458
LIGSHPDLSF	10	Unmodified	_LIGSHPDLSF_					0	0	0		ENSG00000140961|ENST00000393306|OSGIN1	ENSG00000140961|ENST00000393306|OSGIN1	ENSG00000140961|ENST00000393306|OSGIN1	MULTI-MSMS	A375_MHC_IP_R1	1	543.6847534179688	2	543.284931	1084.55531	-0.60494	-0.00032865	-0.47953	-0.00026052	-1.0845	-0.00058918	543.2850347186412	64.245	2.2397	64.245	63.326	65.565	0					121	43	5	0	0	0	0.17045	1	23498	23498		52.268	4.674	1	51186000			30717	5198	22183	22349	30018	30018					0.0164143909764789
LIGYEVFEC	9	Unmodified	_LIGYEVFEC_					0	0	0		ENSG00000171492|ENST00000337338|LRRC8D	ENSG00000171492|ENST00000337338|LRRC8D	ENSG00000171492|ENST00000337338|LRRC8D	MSMS	A375_MHC_IP_R2	2	536.7111206054688	2	536.754618	1071.49468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.05	1	132.24	131.74	132.74	0.18953								0	0	0	0.15486	1	51943	51943		7.9102	1.187	1				30718	7609	22184	22350	30019	30019					-0.038204142769245664
LIHHYVIH	8	Unmodified	_LIHHYVIH_					0	0	0		ENSG00000204524|ENST00000414468|ZNF805;nc|ENSG00000204524|Q5CZA5-2|ZNF805;ENSG00000083844|ENST00000263095|ZNF264	ENSG00000204524|ENST00000414468|ZNF805	ENSG00000204524|ENST00000414468|ZNF805	MSMS	A375_MHC_IP_R1	1	516.4358520507812	2	516.292894	1030.57123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.76	1	24.76	24.26	25.26	0								0	0	0	0.16876	1	7105	7105		11.114	1.767	1				30719	9452	22185	22351	30020	30020					0.057171901252331736
LIHIFEKLY	9	Unmodified	_LIHIFEKLY_					0	0	0			REV__ENST00000556748.5_1_14:58666901-58681958:+|nuORF	REV__ENST00000556748.5_1_14:58666901-58681958:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	392.58770751953125	3	392.56562	1174.67503	-0.0063493	-2.4925E-06	0.050579	1.9856E-05	0.04423	1.7363E-05	392.56549646158453	24.682	0.75739	24.682	24.245	25.002	0					26	14	2	0	0	0	0.69884	1	7086	7086		7.1017	2.5729	1	5861100	+		30720	18630	22186	22352	30021	30021					0.09468052442230146
LIHIQPFSL	9	Unmodified	_LIHIQPFSL_					0	0	0		ENST00000495790.1_1_10:32581422-32635732:-|nuORF;nc|ENSG00000120616|Q9H2F5-3|EPC1;ENSG00000120616|ENST00000319778|EPC1;nc|ENSG00000120616|Q9H2F5|EPC1	ENST00000495790.1_1_10:32581422-32635732:-|nuORF	ENST00000495790.1_1_10:32581422-32635732:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	533.6473999023438	2	534.316035	1066.61752	-0.67946	-0.00036305	2.2681	0.0012119	1.5887	0.00084886	534.8195110349749	87.237	0.25488	87.97	87.812	88.067	0.733					6	4	2	0	0	0	0.75466	1	33175	33175		4.3292	0	1	2698500			30721	3669	22187	22353	30022	30022					0.08687210236666942
LIHKQRKE	8	Unmodified	_LIHKQRKE_					0	0	0			REV__ENST00000511926.5_1_4:103422735-103432090:+|nuORF	REV__ENST00000511926.5_1_4:103422735-103432090:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1588134765625	2	526.322183	1050.62981	-0.53477	-0.00028146	-0.049157	-2.5872E-05	-0.58393	-0.00030733	526.3219343914861	39.97	1.473	40.744	40.422	41.895	0.77451					32	28	2	0	0	0	0.97144	1	15172	15172		14.582	2.0501	1	10496000	+		30722	25621	22188	22354	30023	30023					0.10652246699692114
LIHMNPTFL	9	Unmodified	_LIHMNPTFL_					0	0	0			REV__ENSG00000164363|ENST00000324642|SLC6A18	REV__ENSG00000164363|ENST00000324642|SLC6A18	MULTI-MSMS	A375_MHC_IP_R1	1	543.6934204101562	2	543.294245	1084.57394	-0.53669	-0.00029158	0.026541	1.442E-05	-0.51014	-0.00027716	543.2941450553047	102.63	0.7074	102.63	102.25	102.96	0					20	13	2	0	0	0	0.17328	1	37708	37708		39.957	3.8303	1	3330300	+		30723	20490	22189	22355	30024	30024					0.0350327746784842
LIHNDALSI	9	Unmodified	_LIHNDALSI_					0	0	0			REV__ENSG00000032389|ENST00000382125|EIPR1	REV__ENSG00000032389|ENST00000382125|EIPR1	MULTI-SECPEP	A375_MHC_IP_R1	1	498.6795349121094	2	498.279649	994.544745	-0.22417	-0.0001117	0.18124	9.0306E-05	-0.042938	-2.1395E-05	498.27962400542077	82.126	0.76178	82.126	81.86	82.622	0					23	14	2	0	0	0	0.20645	1	30078	30078		47.749	1.7277	1	2121200	+		30724	16302	22190	22356	30025	30025					0.04725456443236453
LIHNDALSI	9	Unmodified	_LIHNDALSI_					0	0	0			REV__ENSG00000032389|ENST00000382125|EIPR1	REV__ENSG00000032389|ENST00000382125|EIPR1	MULTI-SECPEP	A375_MHC_IP_R2	2	498.67926025390625	2	498.279649	994.544745	-0.61261	-0.00030525	0.30041	0.00014969	-0.3122	-0.00015556	498.2796443112058	81.269	0.60712	82.014	81.776	82.383	0.74473					18	11	2	0	0	0	0.3213	1	30864	30864		46.021	9.8939	1	1930800	+		30725	16302	22190	22356	30026	30026					0.04725456443236453
LIHRDSTIS	9	Unmodified	_LIHRDSTIS_					0	0	0		nc|ENSG00000141258|O43147-5|SGSM2;nc|ENSG00000141258|O43147|SGSM2;ENSG00000141258|ENST00000268989|SGSM2;ENST00000574857.1_1_17:2276624-2276924:+|nuORF	nc|ENSG00000141258|O43147-5|SGSM2	nc|ENSG00000141258|O43147-5|SGSM2	MULTI-SECPEP	A375_MHC_IP_R2	2	521.687255859375	2	521.288005	1040.56146	-0.6398	-0.00033352	-0.079551	-4.1469E-05	-0.71935	-0.00037499	521.2879401136689	45.512	0.40381	46.278	46.099	46.503	0.76519					11	7	2	0	0	0	0.58271	1	17069	17069		20.454	2.3073	1	3024200			30726	5223	22191	22357	30027	30027					0.042799573291858906
LIHSTRIHIM	10	Unmodified	_LIHSTRIHIM_					0	0	0		nc|ENSG00000109472|P16870-2|CPE;ENSG00000109472|ENST00000402744|CPE	nc|ENSG00000109472|P16870-2|CPE	nc|ENSG00000109472|P16870-2|CPE	MSMS	A375_MHC_IP_R2	2	610.862060546875	2	610.85025	1219.68595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.416	1	96.166	95.666	96.666	0.75045								0	0	0	0.15539	1	36246	36246		6.2058	2.9245	1				30727	2871	22192	22358	30028	30028					0.08489131544843076
LIHYCCSAF	9	Unmodified	_LIHYCCSAF_					0	0	0			REV__ENST00000589179.5_1_12:53590773-53591061:-|nuORF	REV__ENST00000589179.5_1_12:53590773-53591061:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	528.182373046875	2	528.735706	1055.45686	-0.27961	-0.00014784	-0.37822	-0.00019998	-0.65783	-0.00034782	528.7353234536838	108.67	0.65856	108.67	108.31	108.97	0					20	12	2	0	0	0	0.74651	1	39902	39902		4.756	4.2977	1	1202500	+		30728	26419	22193	22359	30029	30029					-0.06865203743404891
LIIMYEFF	8	Unmodified	_LIIMYEFF_					0	0	0			REV__ENSG00000171115|ENST00000307271|GIMAP8	REV__ENSG00000171115|ENST00000307271|GIMAP8	MULTI-SECPEP	A375_MHC_IP_R2	2	538.6765747070312	2	538.280272	1074.54599	-0.84284	-0.00045368	-2.7746	-0.0014935	-3.6175	-0.0019472	538.2786055873411	103.3	0.81438	104.06	103.63	104.45	0.76428					28	15	2	0	0	0	0.82569	1	39096	39096		20.871	0	1	1756200	+		30729	21044	22194	22360	30030	30030					0.01169954487772884
LIITILLVRF	10	Unmodified	_LIITILLVRF_					0	0	0		ENSG00000143061|ENST00000369486|IGSF3;nc|ENSG00000143061|O75054-2|IGSF3	ENSG00000143061|ENST00000369486|IGSF3	ENSG00000143061|ENST00000369486|IGSF3	MSMS	A375_MHC_IP_R2	2	400.925048828125	3	400.940798	1199.80057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.378	1	26.021	25.521	26.521	0.64368								0	0	0	0.1562	1	8471	8471		0.69767	0.1345	1				30730	5343	22195	22361	30031	30031					0.20865764298469003
LIIVKPAEE	9	Unmodified	_LIIVKPAEE_					0	0	0			REV__tr|U7T6G7|U7T6G7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00229PE=4SV=1	REV__tr|U7T6G7|U7T6G7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00229PE=4SV=1	MSMS	A375_MHC_IP_R1	1	506.3740234375	2	506.307875	1010.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.87	1	140.87	140.37	141.37	0								0	0	0	0.15486	1	54090	54090		2.0598	0.21551	1		+		30731	28860	22196	22362	30032	30032					0.09632084279905939
LIIVLHLPLY	10	Unmodified	_LIIVLHLPLY_					0	0	0			REV__ENST00000334352.8_1_21:30397079-30400222:+|nuORF	REV__ENST00000334352.8_1_21:30397079-30400222:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	597.0911865234375	2	597.38646	1192.75837	-0.15122	-9.0336E-05	-2.3473	-0.0014023	-2.4985	-0.0014926	597.3856055591531	107.98	0.25223	107.98	107.9	108.15	0					6	4	2	0	0	0	0.92051	1	39657	39657		1.8442	0.36234	1	1454800	+		30732	23655	22197	22363	30033	30033					0.1696978889010552
LIIVLTKKYRL	11	Unmodified	_LIIVLTKKYRL_					0	0	0			REV__SAMD9L|p.E830K|2|0.11|ENSG00000177409|chr7:93133484-93133484|C/T|missense_variant	REV__SAMD9L|p.E830K|2|0.11|ENSG00000177409|chr7:93133484-93133484|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	453.9478454589844	3	453.974391	1358.90134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.382	1	22.001	21.501	22.501	0.61932								0	0	0	0.16358	1	6727	6727		0.08335	0.010087	1		+		30733	27910	22198	22364	30034	30034					0.23624796281319504
LIIYRGDP	8	Unmodified	_LIIYRGDP_					0	0	0		KSR2|p.H462Y|1|0.39|ENSG00000171435|chr12:117558515-117558515|G/A|missense_variant	KSR2|p.H462Y|1|0.39|ENSG00000171435|chr12:117558515-117558515|G/A|missense_variant	KSR2|p.H462Y|1|0.39|ENSG00000171435|chr12:117558515-117558515|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	474.3605651855469	2	473.77146	945.528367	-0.4417	-0.00020926	-0.093297	-4.4201E-05	-0.53499	-0.00025346	473.7713387645577	50.839	0.50715	50.839	50.561	51.068	0					12	9	2	0	0	0	0.91495	1	17978	17978		4.3292	0	1	1338500			30734	14243	22199	22365	30035	30035					0.05342375277143674
LIKDIDPRL	9	Unmodified	_LIKDIDPRL_					0	0	0			REV__nc|ENSG00000149782|Q01970-2|PLCB3	REV__nc|ENSG00000149782|Q01970-2|PLCB3	MULTI-MSMS	A375_MHC_IP_R1	1	361.9366149902344	3	361.557125	1081.64954	0.050321	1.8194E-05	-0.21099	-7.6286E-05	-0.16067	-5.8092E-05	361.557016946393	19.6	0.30521	19.6	19.42	19.725	0					9	5	2	0	0	0	0.70411	1	4868	4868		6.6304	6.6304	1	4899200	+		30735	19697	22200	22366	30036	30036					0.11198577919776653
LIKERQTEREF	11	Unmodified	_LIKERQTEREF_					0	0	0			REV__DNAI2|p.R505Q|1|0.35|ENSG00000171595|chr17:74312022-74312022|G/A|missense_variant	REV__DNAI2|p.R505Q|1|0.35|ENSG00000171595|chr17:74312022-74312022|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	484.3342590332031	3	483.600052	1447.77833	-0.68265	-0.00033013	0.18913	9.1465E-05	-0.49352	-0.00023867	483.9345053491904	38.241	0.56164	38.241	38.016	38.577	0					21	10	3	0	0	0	0.68072	1	12974	12974		17.049	8.2968	1	4481300	+		30736	16020	22201	22367	30037	30037					0.07234888092102665
LIKERQTEREF	11	Unmodified	_LIKERQTEREF_					0	0	0			REV__DNAI2|p.R505Q|1|0.35|ENSG00000171595|chr17:74312022-74312022|G/A|missense_variant	REV__DNAI2|p.R505Q|1|0.35|ENSG00000171595|chr17:74312022-74312022|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	483.999755859375	3	483.600052	1447.77833	-1.0352	-0.0005006	-0.0058679	-2.8377E-06	-1.041	-0.00050344	483.6001336955838	37.394	0.40955	38.165	37.917	38.327	0.7709					19	7	3	0	0	0	0.72909	2	13709	13684;13709		9.7643	4.1213	1	3502500	+		30737	16020	22201	22367	30038;30039	30039					0.07234888092102665
LIKGKEHE	8	Unmodified	_LIKGKEHE_					0	0	0			REV__MYH8|p.E1558K|1|0.38|ENSG00000133020|chr17:10395423-10395423|C/T|missense_variant	REV__MYH8|p.E1558K|1|0.38|ENSG00000133020|chr17:10395423-10395423|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	477.6741638183594	2	477.274367	952.53418	-0.91219	-0.00043536	-0.058099	-2.7729E-05	-0.97029	-0.00046309	477.2743607648131	38.468	0.61079	39.243	38.997	39.607	0.77451					29	11	3	0	0	0	0.84294	1	14154	14154		18.146	0	1	16987000	+		30738	27062	22202	22368	30040	30040					0.056014737887949195
LIKIKVFM	8	Unmodified	_LIKIKVFM_					0	0	0			REV__LATS2|p.T673I|1|0.3|ENSG00000150457|chr13:20983688-20983688|G/A|missense_variant	REV__LATS2|p.T673I|1|0.3|ENSG00000150457|chr13:20983688-20983688|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	496.3583984375	2	496.322274	990.629995	-0.32659	-0.00016209	-0.47326	-0.00023489	-0.79985	-0.00039698	496.321968380913	135.66	0.66498	135.79	135.66	136.32	0.13594					24	12	3	0	0	0	0.77842	1	53353	53353		0.69038	0.69038	1	6603700	+		30739	26917	22203	22369	30041	30041					0.13430530375342187
LIKIKVFM	8	Unmodified	_LIKIKVFM_					0	0	0			REV__LATS2|p.T673I|1|0.3|ENSG00000150457|chr13:20983688-20983688|G/A|missense_variant	REV__LATS2|p.T673I|1|0.3|ENSG00000150457|chr13:20983688-20983688|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	496.322274	990.629995	-0.67546	-0.00033524	0.13212	6.5576E-05	-0.54333	-0.00026967	496.3222906423159	135.75	0.76758	135.75	135.59	136.36	0	-0.018223	0.00029862	NaN	0.69038	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6709300	+		30740	26917	22203	22369							0.13430530375342187
LIKIKVFM	8	Unmodified	_LIKIKVFM_					0	0	0			REV__LATS2|p.T673I|1|0.3|ENSG00000150457|chr13:20983688-20983688|G/A|missense_variant	REV__LATS2|p.T673I|1|0.3|ENSG00000150457|chr13:20983688-20983688|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	496.322274	990.629995	-0.32659	-0.00016209	-0.47326	-0.00023489	-0.79985	-0.00039698	496.321968380913	135.66	0.66498	135.79	135.66	136.32	0.13594	0.018223	-0.00030231	NaN	0.69038	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6603700	+		30741	26917	22203	22369							0.13430530375342187
LIKKRKKIPQ	10	Unmodified	_LIKKRKKIPQ_					0	0	0		NGDN|p.P294L|1|0.46|ENSG00000129460|chr14:23477513-23477513|C/T|missense_variant	NGDN|p.P294L|1|0.46|ENSG00000129460|chr14:23477513-23477513|C/T|missense_variant	NGDN|p.P294L|1|0.46|ENSG00000129460|chr14:23477513-23477513|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	626.4302978515625	2	626.434807	1250.85506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.468	1	94.468	93.968	94.968	0								0	0	0	0.15629	1	34723	34723		0.40072	0	1				30742	14993	22204	22370	30042	30042					0.23966776169868353
LIKKVFSESI	10	Unmodified	_LIKKVFSESI_					0	0	0			REV__tr|U7SMF0|U7SMF0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01964PE=4SV=1	REV__tr|U7SMF0|U7SMF0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01964PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	582.25439453125	2	582.355357	1162.69616	-0.19315	-0.00011248	-0.39085	-0.00022761	-0.584	-0.0003401	582.3552875518579	137.16	0.66956	137.26	136.8	137.47	0.10074					22	12	3	0	0	0	0.92389	1	53808	53808		7.2892	0.56607	1	1389500	+		30743	28300	22205	22371	30043	30043					0.12132017751082458
LIKKVTSYEEI	11	Unmodified	_LIKKVTSYEEI_					0	0	0		ENSG00000164304|ENST00000502583|CAGE1	ENSG00000164304|ENST00000502583|CAGE1	ENSG00000164304|ENST00000502583|CAGE1	MULTI-MSMS	A375_MHC_IP_R2	2	442.3244934082031	3	441.590383	1321.74932	-0.38097	-0.00016823	0.029012	1.2812E-05	-0.35195	-0.00015542	441.59024799462435	32.484	0.71332	33.221	32.755	33.468	0.73692					31	13	3	0	0	0	0.73318	1	11527	11527		5.8681	0.34485	1	5516300			30744	6818	22206	22372	30044	30044					0.10131350743108669
LIKLLTKIKH	10	Unmodified	_LIKLLTKIKH_					0	0	0			REV__tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1	REV__tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1	MSMS	A375_MHC_IP_R1	1	603.9736328125	2	603.918458	1205.82236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.216	1	95.216	94.716	95.716	0								0	0	0	0.15628	1	34996	34996		0.45834	0	1		+		30745	28224	22207	22373	30045	30045					0.2276856904700253
LIKPKLKKFIK	11	Unmodified	_LIKPKLKKFIK_					0	0	0		tr|U7SR09|U7SR09_FUSNUProteinAbiQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01744PE=4SV=1	tr|U7SR09|U7SR09_FUSNUProteinAbiQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01744PE=4SV=1	tr|U7SR09|U7SR09_FUSNUProteinAbiQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01744PE=4SV=1	MSMS	A375_MHC_IP_R2	2	678.2969360351562	2	678.478683	1354.94281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.57	1	144.59	144.09	145.09	0.024414								0	0	0	0.1636	1	56466	56466		0	0	1				30746	29605	22208	22374	30046	30046					0.2795397704062452
LIKQYTKQL	9	Unmodified	_LIKQYTKQL_					0	0	0			REV__ENSG00000113971|ENST00000337331|NPHP3	REV__ENSG00000113971|ENST00000337331|NPHP3	MULTI-SECPEP	A375_MHC_IP_R2	2	567.163818359375	2	567.847699	1133.68084	-0.26262	-0.00014913	-0.11935	-6.7772E-05	-0.38197	-0.0002169	567.8479746167573	68.949	0.45688	69.684	69.423	69.88	0.73511					13	8	2	0	0	0	0.78351	1	26056	26056		4.756	0	1	1055400	+		30747	17810	22209	22375	30047	30047					0.11935150953877383
LIKQYTKQL	9	Unmodified	_LIKQYTKQL_					0	0	0			REV__ENSG00000113971|ENST00000337331|NPHP3	REV__ENSG00000113971|ENST00000337331|NPHP3	MULTI-MATCH	A375_MHC_IP_R1	1		2	567.847699	1133.68084	-0.018372	-1.0432E-05	-0.55195	-0.00031343	-0.57032	-0.00032386	567.8474890335241	69.976	0.30264	69.976	69.782	70.085	0	0.14616	-0.00018264	NaN	4.756	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1152000	+		30748	17810	22209	22375							0.11935150953877383
LIKRWWEY	8	Unmodified	_LIKRWWEY_					0	0	0			REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MULTI-MSMS	A375_MHC_IP_R2	2	597.1334228515625	2	597.326934	1192.63931	-1.0779	-0.00064388	-0.25552	-0.00015263	-1.3335	-0.00079651	597.3268824795653	52.87	0.60951	53.621	53.385	53.995	0.75105					22	11	4	0	0	0	0.77603	1	20017	20017		9.3474	1.4373	1	6396100	+		30749	19903	22210	22376	30048	30048					0.0507001498522186
LILASQMYVP	10	Unmodified	_LILASQMYVP_					0	0	0		ENST00000548984.1_1_12:53691573-53691735:+|nuORF;ENST00000552341.5_1_12:53691573-53693126:+|nuORF	ENST00000548984.1_1_12:53691573-53691735:+|nuORF	ENST00000548984.1_1_12:53691573-53691735:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	567.6597900390625	2	567.81501	1133.61547	-0.31955	-0.00018144	2.9077	0.001651	2.5881	0.0014696	568.3184206860345	77.597	0.55867	77.597	77.336	77.895	0					17	10	2	0	0	0	0.74754	1	28278	28278		12.241	0	1	1356800			30750	13355	22211	22377	30049	30049					0.05400413436541385
LILCCLLIM	9	Unmodified	_LILCCLLIM_					0	0	0		ENSG00000203722|ENST00000367360|RAET1G	ENSG00000203722|ENST00000367360|RAET1G	ENSG00000203722|ENST00000367360|RAET1G	MSMS	A375_MHC_IP_R1	1	517.7049560546875	2	517.794178	1033.5738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.502	1	80.502	80.002	81.002	0								0	0	0	0.15043	1	29399	29399		20.871	6.2895	1				30751	9392	22212	22378	30050	30050					0.05835818152013417
LILCLMMF	8	Unmodified	_LILCLMMF_					0	0	0			REV__nc|ENSG00000086205|Q04609-3|FOLH1	REV__nc|ENSG00000086205|Q04609-3|FOLH1	MSMS	A375_MHC_IP_R1	1	492.1895446777344	2	492.259971	982.505388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.2	1	107.2	106.7	107.7	0								0	0	0	0.16876	1	39340	39340		11.114	0.93107	1		+		30752	26644	22213	22379	30051	30051					0.013435735721486708
LILCNLQSRPF	11	Unmodified	_LILCNLQSRPF_					0	0	0			REV__ENST00000505695.5_1_5:16742255-16742309:-|nuORF	REV__ENST00000505695.5_1_5:16742255-16742309:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	652.9957275390625	2	652.36319	1302.71183	-0.7854	-0.00051237	2.9636	0.0019334	2.1782	0.001421	652.8658471674864	102.49	0.2551	103.25	103.18	103.43	0.76428					5	4	2	0	0	0	0.99424	1	38856	38856		4.897	0.95262	1	538870	+		30753	25538	22214	22380	30052	30052					0.07257980996473634
LILDNSLIY	9	Unmodified	_LILDNSLIY_					0	0	0		FRAS1|p.D3866N|1|0.35|ENSG00000138759|chr4:78540681-78540681|G/A|missense_variant	FRAS1|p.D3866N|1|0.35|ENSG00000138759|chr4:78540681-78540681|G/A|missense_variant	FRAS1|p.D3866N|1|0.35|ENSG00000138759|chr4:78540681-78540681|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	532.3082885742188	2	532.305332	1062.59611	-0.66011	-0.00035138	0.27087	0.00014419	-0.38924	-0.00020719	532.3053735684871	95.842	0.75896	95.842	95.515	96.274	0					36	14	3	0	0	0	0.17328	1	35127	35127		39.957	1.9833	1	22350000			30754	14014	22215	22381	30053	30053					0.0673178041729443
LILDTRRAI	9	Unmodified	_LILDTRRAI_					0	0	0		ENSG00000085998|ENST00000371984|POMGNT1;nc|ENSG00000085998|Q8WZA1-2|POMGNT1;ENST00000489985.1_1_1:46661446-46663526:-|nuORF	ENSG00000085998|ENST00000371984|POMGNT1	ENSG00000085998|ENST00000371984|POMGNT1	MULTI-MSMS	A375_MHC_IP_R1	1	357.9309387207031	3	357.560869	1069.66078	0.54465	0.00019474	-0.47253	-0.00016896	0.072118	2.5787E-05	357.5605401246241	48.976	0.60704	48.976	48.78	49.387	0					15	11	2	0	0	0	0.6324	1	17283	17283		12.873	4.9272	1	1453200			30755	1824	22216	22382	30054	30054					0.12873400013927494
LILFYLLKL	9	Unmodified	_LILFYLLKL_					0	0	0			REV__HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|390|3|anti-sense	REV__HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|390|3|anti-sense	MULTI-MSMS	A375_MHC_IP_R2	2	1136.816162109375	1	1135.74893	1134.74165	0.16823	0.00019107	0.78171	0.00088782	0.94994	0.0010789	1136.749824311787	105.28	0.2551	106.05	105.92	106.17	0.76308					6	4	2	0	0	0	0.7724	1	39837	39837		0.52476	0	1	1088900	+		30756	26739	22217	22383	30055	30055					0.17967288004138027
LILIFLVLLFW	11	Unmodified	_LILIFLVLLFW_					0	0	0		tr|U7SRD9|U7SRD9_FUSNUManganese/zinc/irontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01564PE=3SV=1	tr|U7SRD9|U7SRD9_FUSNUManganese/zinc/irontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01564PE=3SV=1	tr|U7SRD9|U7SRD9_FUSNUManganese/zinc/irontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01564PE=3SV=1	MSMS	A375_MHC_IP_R2	2	695.8224487304688	2	695.44906	1388.88357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.78	1	143.8	143.3	144.3	0.024414								0	0	0	0.16353	1	56181	56181		0.35063	0	1				30757	29607	22218	22384	30056	30056					0.20468081026456275
LILKKRRRF	9	Unmodified	_LILKKRRRF_					0	0	0			REV__ENST00000395954.3_1_20:52773958-52774087:-|nuORF	REV__ENST00000395954.3_1_20:52773958-52774087:-|nuORF	MSMS	A375_MHC_IP_R1	1	615.421875	2	615.419491	1228.82443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.69	1	118.69	118.19	119.19	0								0	0	0	0.15486	1	43768	43768		2.0598	0.40713	1		+		30758	24332	22219	22385	30057	30057					0.21917042575478263
LILMIFSKL	9	Unmodified	_LILMIFSKL_					0	0	0		nc|ENSG00000069431|O60706|ABCC9;ENSG00000069431|ENST00000261200|ABCC9	nc|ENSG00000069431|O60706|ABCC9	nc|ENSG00000069431|O60706|ABCC9	MSMS	A375_MHC_IP_R2	2	359.9286804199219	3	359.896201	1076.66677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.227	1	29.926	29.426	30.426	0.69872								0	0	0	0.15411	1	10188	10188		14.405	0	1				30759	1477	22220	22386	30058	30058					0.13150782201250877
LILNDFVRQKF	11	Unmodified	_LILNDFVRQKF_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000451871.1_1_13:42499863-42500601:+|nuORF	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MSMS	A375_MHC_IP_R2	2	696.9038696289062	2	696.903537	1391.79252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.96	1	105.72	105.22	106.22	0.76308								0	0	0	0.16191	1	39703	39703		8.7454	1.1365	1				30760	1382	22221	22387	30059	30059					0.11229585311025403
LILNQNALL	9	Unmodified	_LILNQNALL_					0	0	0		CENPQ|p.P233L|1|0.35|ENSG00000031691|chr6:49492166-49492166|C/T|missense_variant	CENPQ|p.P233L|1|0.35|ENSG00000031691|chr6:49492166-49492166|C/T|missense_variant	CENPQ|p.P233L|1|0.35|ENSG00000031691|chr6:49492166-49492166|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	507.9720153808594	2	506.313492	1010.61243	-0.57014	-0.00028867	-0.53747	-0.00027213	-1.1076	-0.0005608	506.3134004799557	84.415	1.7776	84.415	83.736	85.513	0					105	34	5	0	0	0	0.50735	1	30771	30771		19.439	0.18201	1	106490000			30761	362	22222	22388	30060	30060					0.1075490637402936
LILQINGV	8	Unmodified	_LILQINGV_					0	0	0		nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3;TJP3|p.G234E|1|0.25|ENSG00000105289|chr19:3732022-3732022|G/A|missense_variant	nc|ENSG00000105289|O95049-5|TJP3	nc|ENSG00000105289|O95049-5|TJP3	MSMS	A375_MHC_IP_R1	1	435.2822570800781	2	435.276378	868.538203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.246	1	66.246	65.746	66.746	0								0	0	0	0.16876	1	23985	23985		11.114	0	1				30762	2586	22223	22389	30061	30061					0.09867563282534775
LILQSGSF	8	Unmodified	_LILQSGSF_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B;MAP1B|p.S158F|1|0.19|ENSG00000131711|chr5:72186717-72186717|C/T|missense_variant	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-SECPEP	A375_MHC_IP_R2	2	432.2750244140625	2	432.744911	863.475269	-0.2789	-0.00012069	-0.47842	-0.00020703	-0.75732	-0.00032772	432.74475356908755	39.673	0.40649	40.447	40.219	40.626	0.77451					9	7	2	0	0	0	0.95424	1	14723	14723		19.257	3.4098	1	1528100			30763	4343	22224	22390	30062	30062					0.03806997494484676
LILRKRRLY	9	Unmodified	_LILRKRRLY_					0	0	0			REV__ENST00000299601.9_1_15:52258104-52258191:-|nuORF	REV__ENST00000299601.9_1_15:52258104-52258191:-|nuORF	MSMS	A375_MHC_IP_R1	1	615.91162109375	2	615.911499	1229.80845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.295	1	33.295	32.795	33.795	0								0	0	0	0.15486	1	10856	10856		0.6015	0.14316	1		+		30764	23407	22225	22391	30063	30063					0.2027333633861872
LILRMMIS	8	Oxidation (M)	_LILRM(Oxidation (M))MIS_		LILRM(0.5)M(0.5)IS		LILRM(0)M(0)IS	0	0	1		ENST00000470496.1_1_3:146234890-146239365:-|nuORF	ENST00000470496.1_1_3:146234890-146239365:-|nuORF	ENST00000470496.1_1_3:146234890-146239365:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	496.18035888671875	2	496.785198	991.555844	-0.38222	-0.00018988	0.89731	0.00044577	0.51509	0.00025589	496.7857010519055	128.76	0.40921	128.76	128.63	129.04	0					12	7	3	0	0	0	0.69122	1	49516	49516		48.346	48.346	2	7876000			30765	12335	22226	22392	30064	30064		458;459			0.05972819221517511
LILRMMIS	8	Oxidation (M)	_LILRM(Oxidation (M))MIS_		LILRM(0.5)M(0.5)IS		LILRM(0)M(0)IS	0	0	1		ENST00000470496.1_1_3:146234890-146239365:-|nuORF	ENST00000470496.1_1_3:146234890-146239365:-|nuORF	ENST00000470496.1_1_3:146234890-146239365:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	497.1849060058594	2	496.785198	991.555844	-0.54476	-0.00027063	-0.36004	-0.00017886	-0.9048	-0.00044949	496.78492872074406	128.53	0.45712	128.77	128.55	129.01	0.23947					11	8	2	0	0	0	0.51581	1	50490	50490		48.346	48.346	2	6080900			30766	12335	22226	22392	30065	30065		458;459			0.05972819221517511
LILRPIRSRSI	11	Unmodified	_LILRPIRSRSI_					0	0	0			REV__ENST00000531284.1_1_8:110631065-110656945:-|nuORF	REV__ENST00000531284.1_1_8:110631065-110656945:-|nuORF	MSMS	A375_MHC_IP_R1	1	662.2288208007812	2	662.432796	1322.85104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.019	1	83.019	82.519	83.519	0								0	0	0	0.16297	1	30369	30369		3.2813	1.6287	1		+		30767	19600	22227	22393	30066	30066					0.20252686676167286
LILSIRSK	8	Unmodified	_LILSIRSK_					0	0	0			REV__ENST00000369452.8_1_10:112772209-112772257:+|nuORF	REV__ENST00000369452.8_1_10:112772209-112772257:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	930.6570434570312	1	929.614228	928.606951	-0.17721	-0.00016474	2.7336	0.0025412	2.5564	0.0023764	929.615479893117	118.26	0.2549	118.87	118.8	119.05	0.60909					6	4	2	0	0	0	0.77797	1	44947	44947		2.3027	0	1	5347600	+		30768	24009	22228	22394	30067	30067					0.13979227582240128
LILWAHHST	9	Unmodified	_LILWAHHST_					0	0	0			REV__ENST00000341259.6_1_12:111887440-111887905:+|nuORF	REV__ENST00000341259.6_1_12:111887440-111887905:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	539.13330078125	2	539.295633	1076.57671	-0.5105	-0.00027531	0.70765	0.00038163	0.19715	0.00010632	539.2953930858636	105.95	0.40746	105.95	105.76	106.16	0					10	7	2	0	0	0	0.74651	1	38891	38891		13.508	0.97634	1	1035300	+		30769	23730	22229	22395	30068	30068					0.04148868917036452
LILYRSRY	8	Unmodified	_LILYRSRY_					0	0	0			REV__ENST00000533581.1_1_1:31658018-31661124:-|nuORF	REV__ENST00000533581.1_1_1:31658018-31661124:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	361.96087646484375	3	361.881831	1082.62366	0.15307	5.5392E-05	-0.27163	-9.8297E-05	-0.11856	-4.2906E-05	361.8816504790799	28.381	0.85805	28.381	27.887	28.745	0					32	16	4	0	0	0	0.8957	1	8806	8806		17.113	0	1	10543000	+		30770	16823	22230	22396	30069	30069					0.08565728468170164
LILYRSRY	8	Unmodified	_LILYRSRY_					0	0	0			REV__ENST00000533581.1_1_1:31658018-31661124:-|nuORF	REV__ENST00000533581.1_1_1:31658018-31661124:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	362.2816467285156	3	361.881831	1082.62366	-0.11535	-4.1743E-05	0.16081	5.8195E-05	0.045462	1.6452E-05	361.88177075424323	27.547	0.7097	28.225	27.843	28.553	0.67857					29	13	3	0	0	0	0.73563	1	9430	9430		29.082	0	1	13301000	+		30771	16823	22230	22396	30070	30070					0.08565728468170164
LIMHTWSVS	9	Unmodified	_LIMHTWSVS_					0	0	0			REV__ENST00000565264.1_1_15:75728701-75743878:-|nuORF	REV__ENST00000565264.1_1_15:75728701-75743878:-|nuORF	MSMS	A375_MHC_IP_R1	1	358.5845031738281	3	358.519794	1072.53755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.01	1	136.01	135.51	136.51	0								0	0	0	0.15486	1	52404	52404		2.7352	0	1		+		30772	26227	22231	22397	30071	30071					0.004184005711522332
LIMIKFLIEAL	11	Unmodified	_LIMIKFLIEAL_					0	0	0			REV__nc|ENSG00000135373|Q9NZC4-3|EHF	REV__nc|ENSG00000135373|Q9NZC4-3|EHF	MSMS	A375_MHC_IP_R2	2	435.64886474609375	3	435.273449	1302.79852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.6	1	143.62	143.12	144.12	0.024414								0	0	0	0.16332	1	56115	56115		1.4551	0.12547	1		+		30773	27239	22232	22398	30072	30072					0.15922967498340768
LIMSNTKLL	9	Unmodified	_LIMSNTKLL_					0	0	0		nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1922607421875	2	516.809728	1031.6049	-0.7848	-0.00040559	-0.92609	-0.00047861	-1.7109	-0.00088421	517.3109188016298	41.71	0.41035	41.71	41.47	41.88	0					9	7	2	0	0	0	0.75466	1	14441	14441		4.3292	1.7518	1	1153700			30774	9265	22233	22399	30073	30073					0.09036430782111893
LIMTQQRLD	9	Unmodified	_LIMTQQRLD_					0	0	0		ENST00000524817.5_1_11:9763170-9763260:+|nuORF	ENST00000524817.5_1_11:9763170-9763260:+|nuORF	ENST00000524817.5_1_11:9763170-9763260:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	372.9522705078125	3	373.205986	1116.59613	0.23462	8.7562E-05	-1.9168	-0.00071537	-1.6822	-0.00062781	373.2054645463634	33.162	0.3027	33.162	32.938	33.241	0					6	5	2	0	0	0	0.69179	1	10708	10708		21.59	11.44	1	746550			30775	13061	22234	22400	30074	30074					0.04249457145624547
LINAKREAE	9	Unmodified	_LINAKREAE_					0	0	0			REV__nc|ENSG00000213085|Q9UL16-2|CFAP45	REV__nc|ENSG00000213085|Q9UL16-2|CFAP45	MULTI-MSMS	A375_MHC_IP_R2	2	522.6951904296875	2	522.29583	1042.57711	-0.63421	-0.00033124	0.31414	0.00016407	-0.32007	-0.00016717	522.2959135353661	127.69	1.1185	127.96	127.56	128.68	0.26593					40	21	2	0	0	0	0.73804	1	50304	50304		3.5965	0.31518	1	30242000	+		30776	22612	22235	22401	30075	30075					0.057522438462456194
LINDLWER	8	Unmodified	_LINDLWER_					0	0	0			REV__RP1L1|p.P965L|1|0.41|ENSG00000183638|chr8:10611204-10611204|G/A|missense_variant	REV__RP1L1|p.P965L|1|0.41|ENSG00000183638|chr8:10611204-10611204|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	352.9693298339844	3	353.525825	1057.55564	-0.32202	-0.00011384	-0.17122	-6.0532E-05	-0.49324	-0.00017437	353.525685890032	28.97	0.30425	28.97	28.845	29.149	0					7	5	2	0	0	0	0.972	1	9012	9012		9.3831	4.4861	1	1566300	+		30777	27895	22236	22402	30076	30076					0.029168588175252808
LINDLWER	8	Unmodified	_LINDLWER_					0	0	0			REV__RP1L1|p.P965L|1|0.41|ENSG00000183638|chr8:10611204-10611204|G/A|missense_variant	REV__RP1L1|p.P965L|1|0.41|ENSG00000183638|chr8:10611204-10611204|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	353.525825	1057.55564	-0.51099	-0.00018065	-0.034411	-1.2165E-05	-0.5454	-0.00019281	353.5258828328603	28.234	0.30406	28.913	28.706	29.01	0.67857	-0.028777	7.1154E-05	NaN	9.3831	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1067000	+		30778	27895	22236	22402							0.029168588175252808
LINEWTQSD	9	Unmodified	_LINEWTQSD_					0	0	0			REV__nc|ENSG00000135241|Q9NP80-3|PNPLA8	REV__nc|ENSG00000135241|Q9NP80-3|PNPLA8	MULTI-MSMS	A375_MHC_IP_R1	1	553.224609375	2	553.261653	1104.50875	-0.35627	-0.00019711	-0.86827	-0.00048038	-1.2245	-0.00067749	553.26096891653	42.995	1.1176	42.995	42.537	43.655	0					32	21	2	0	0	0	0.6898	1	15021	15021		7.9102	7.9102	1	1405400	+		30779	18833	22237	22403	30077	30077					-0.039320455242886965
LINEWTQSD	9	Unmodified	_LINEWTQSD_					0	0	0			REV__nc|ENSG00000135241|Q9NP80-3|PNPLA8	REV__nc|ENSG00000135241|Q9NP80-3|PNPLA8	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	553.261653	1104.50875	-0.35627	-0.00019711	-0.86827	-0.00048038	-1.2245	-0.00067749	553.26096891653	42.995	1.1176	42.995	42.537	43.655	0	-0.16407	-0.00053164	NaN	7.9102	32	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1405400	+		30780	18833	22237	22403							-0.039320455242886965
LINKINNLL	9	Unmodified	_LINKINNLL_					0	0	0		ENSG00000241127|ENST00000223273|YAE1	ENSG00000241127|ENST00000223273|YAE1	ENSG00000241127|ENST00000223273|YAE1	MULTI-SECPEP	A375_MHC_IP_R1	1	528.2345581054688	2	527.834591	1053.65463	-0.56267	-0.000297	-0.0034118	-1.8009E-06	-0.56609	-0.0002988	527.8345001594367	95.737	1.1141	95.737	95.415	96.529	0					53	21	4	0	0	0	0.40041	1	35151	35151		38.151	17.737	1	16314000			30781	9782	22238	22404	30078	30078					0.12994881782424272
LINKPGSDTF	10	Unmodified	_LINKPGSDTF_					0	0	0		DAXX|p.P280S|1|0.3|ENSG00000204209|chr6:33320937-33320937|G/A|missense_variant	DAXX|p.P280S|1|0.3|ENSG00000204209|chr6:33320937-33320937|G/A|missense_variant	DAXX|p.P280S|1|0.3|ENSG00000204209|chr6:33320937-33320937|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	546.7263793945312	2	546.290214	1090.56587	-0.30333	-0.0001657	-0.231	-0.00012619	-0.53433	-0.0002919	546.290089925722	107.16	0.66544	107.16	106.98	107.65	0					20	12	3	0	0	0	0.66712	1	39327	39327		15.847	2.3393	1	2047200			30782	710	22239	22405	30079	30079					0.02421421752092101
LINKSGELLV	10	Unmodified	_LINKSGELLV_					0	0	0		COPS3|p.A36V|1|0.31|ENSG00000141030|chr17:17276113-17276113|G/A|missense_variant	COPS3|p.A36V|1|0.31|ENSG00000141030|chr17:17276113-17276113|G/A|missense_variant	COPS3|p.A36V|1|0.31|ENSG00000141030|chr17:17276113-17276113|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	362.95684814453125	3	362.557013	1084.64921	0.22101	8.013E-05	-1.2106	-0.00043892	-0.9896	-0.00035879	362.5565740745202	20.155	0.96596	20.155	19.776	20.742	0					33	18	2	0	0	0	0.5901	1	5077	5077		44.392	6.6206	1	5719100			30783	639	22240	22406	30080	30080					0.11027158199954101
LINLIKQKLQN	11	Unmodified	_LINLIKQKLQN_					0	0	0			REV__nc|ENSG00000172915|Q8NFP9|NBEA	REV__nc|ENSG00000172915|Q8NFP9|NBEA	MULTI-SECPEP	A375_MHC_IP_R2	2	442.6813659667969	3	442.281883	1323.82382	-0.6465	-0.00028594	0.15492	6.8517E-05	-0.49159	-0.00021742	442.2819046189397	60.703	0.55736	61.449	61.211	61.769	0.74504					30	10	4	0	0	0	0.99916	1	22988	22988		4.4062	0	1	14810000	+		30784	21180	22241	22407	30081	30081					0.17486158345150216
LINMLYNTV	9	Unmodified	_LINMLYNTV_					0	0	0			REV__ENST00000437653.1_1_3:175695775-175695877:-|nuORF	REV__ENST00000437653.1_1_3:175695775-175695877:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	540.6998901367188	2	540.791535	1079.56852	-0.71767	-0.00038811	-0.36338	-0.00019651	-1.081	-0.00058462	540.7911967271134	87.208	0.96667	87.208	86.881	87.848	0					24	18	3	0	0	0	0.4867	1	32081	32081		20.454	3.3407	1	2573900	+		30785	24774	22242	22408	30082	30082					0.03191553885380927
LINNAIYEITD	11	Unmodified	_LINNAIYEITD_					0	0	0		tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1	tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1	tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	640.1461181640625	2	639.832443	1277.65033	-0.62418	-0.00039937	0.030028	1.9213E-05	-0.59415	-0.00038016	639.832463510581	100.03	0.50481	100.03	99.774	100.28	0					21	9	3	0	0	0	0.65093	1	36660	36660		19.362	5.7471	1	5463400			30786	29585	22243	22409	30083	30083					0.02261327778182931
LINNEIMF	8	Unmodified	_LINNEIMF_					0	0	0			REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	MSMS	A375_MHC_IP_R1	1	497.1558532714844	2	497.257328	992.500103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.564	1	78.564	78.064	79.064	0								0	0	0	0.16876	1	28671	28671		14.582	0	1		+		30787	28690	22244	22410	30084	30084					0.0035530930555296436
LINPDIKVV	9	Unmodified	_LINPDIKVV_					0	0	0		ENSG00000013441|ENST00000321356|CLK1;nc|ENSG00000013441|P49759-3|CLK1;ENST00000473565.5_1_2:201718031-201724542:-|nuORF;ENST00000461981.5_1_2:201718031-201721754:-|nuORF	ENSG00000013441|ENST00000321356|CLK1	ENSG00000013441|ENST00000321356|CLK1	MSMS	A375_MHC_IP_R2	2	505.72344970703125	2	505.815867	1009.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.876	1	58.625	58.125	59.125	0.74894								0	0	0	0.15486	1	21889	21889		10.824	2.9138	1				30788	1022	22245	22411	30085	30085					0.11275790516810957
LINQLSLMIEY	11	Unmodified	_LINQLSLMIEY_					0	0	0			REV__nc|ENSG00000129493|Q86XA9|HEATR5A	REV__nc|ENSG00000129493|Q86XA9|HEATR5A	MSMS	A375_MHC_IP_R2	2	668.7594604492188	2	668.862689	1335.71082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.739	1	59.486	58.986	59.986	0.74714								0	0	0	0.16179	1	22225	22225		9.3831	1.2276	1		+		30789	18494	22246	22412	30086	30086					0.05639721836928402
LIPAPELVERV	11	Unmodified	_LIPAPELVERV_					0	0	0		nc|ENSG00000197705|Q9P2G3-2|KLHL14;ENSG00000197705|ENST00000359358|KLHL14	nc|ENSG00000197705|Q9P2G3-2|KLHL14	nc|ENSG00000197705|Q9P2G3-2|KLHL14	MSMS	A375_MHC_IP_R1	1	412.6189880371094	3	412.583451	1234.72852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.459	1	40.459	39.959	40.959	0								0	0	0	0.1624	1	13905	13905		6.2344	0	1				30790	9185	22247	22413	30087	30087					0.12054805154070891
LIPAVLHL	8	Unmodified	_LIPAVLHL_					0	0	0		ENST00000486291.1_1_2:202262833-202263061:-|nuORF;ENST00000332624.7_1_2:202262293-202264107:-|nuORF	ENST00000486291.1_1_2:202262833-202263061:-|nuORF	ENST00000486291.1_1_2:202262833-202263061:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	438.68896484375	2	438.289288	874.564024	-0.04259	-1.8667E-05	0.2729	0.00011961	0.23031	0.00010094	438.2893321023348	96.847	1.2653	96.847	96.529	97.794	0					43	24	3	0	0	0	0.41926	1	35558	35558		52.334	0	1	6384200			30791	10778	22248	22414	30088	30088					0.12172457524798119
LIPAVLHL	8	Unmodified	_LIPAVLHL_					0	0	0		ENST00000486291.1_1_2:202262833-202263061:-|nuORF;ENST00000332624.7_1_2:202262293-202264107:-|nuORF	ENST00000486291.1_1_2:202262833-202263061:-|nuORF	ENST00000486291.1_1_2:202262833-202263061:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	438.6888122558594	2	438.289288	874.564024	-0.22564	-9.8894E-05	0.27487	0.00012047	0.049234	2.1579E-05	438.2893162284341	95.862	0.96593	96.612	96.296	97.262	0.75045					38	18	3	0	0	0	0.41926	1	36367	36367		52.334	0	1	8635800			30792	10778	22248	22414	30089	30089					0.12172457524798119
LIPFAGSPVLF	11	Unmodified	_LIPFAGSPVLF_					0	0	0			REV__ENST00000490965.1_1_2:201983403-201983757:+|nuORF	REV__ENST00000490965.1_1_2:201983403-201983757:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	580.2347412109375	2	580.839342	1159.66413	-0.35997	-0.00020908	1.5842	0.00092015	1.2242	0.00071107	580.8416272615186	86.806	0.75798	86.806	86.325	87.083	0					16	14	2	0	0	0	0.98977	1	31909	31909		6.7232	1.4925	1	1353400	+		30793	24612	22249	22415	30090	30090					0.09068650067933959
LIPLHFLCL	9	Unmodified	_LIPLHFLCL_					0	0	0		ENST00000586276.5_1_17:42931463-42937758:-|nuORF	ENST00000586276.5_1_17:42931463-42937758:-|nuORF	ENST00000586276.5_1_17:42931463-42937758:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	534.188720703125	2	534.817356	1067.62016	-0.7183	-0.00038416	2.3006	0.0012304	1.5823	0.00084623	534.8181096250765	79.171	0.76093	79.916	79.337	80.098	0.74474					29	14	3	0	0	0	0.64653	1	30009	30009		5.2307	0.33366	1	1890700			30794	13726	22250	22416	30091	30091					0.08905342369939717
LIPLLILKKL	10	Unmodified	_LIPLLILKKL_					0	0	0		ENST00000590156.5_1_18:43671730-43674948:-|nuORF	ENST00000590156.5_1_18:43671730-43674948:-|nuORF	ENST00000590156.5_1_18:43671730-43674948:-|nuORF	MSMS	A375_MHC_IP_R1	1	582.4571533203125	2	582.428128	1162.8417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.158	1	88.158	87.658	88.658	0								0	0	0	0.15629	1	32359	32359		0.40072	0	1				30795	13781	22251	22417	30092	30092					0.2667952533793141
LIPNTMNCM	9	Unmodified	_LIPNTMNCM_					0	0	0		GRIN3A|p.S415N|1|0.37|ENSG00000198785|chr9:101686656-101686656|C/T|missense_variant	GRIN3A|p.S415N|1|0.37|ENSG00000198785|chr9:101686656-101686656|C/T|missense_variant	GRIN3A|p.S415N|1|0.37|ENSG00000198785|chr9:101686656-101686656|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	518.6765747070312	2	518.734848	1035.45514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.166	1	60.914	60.414	61.414	0.74714								0	0	0	0.15486	1	22774	22774		7.9102	0.62092	1				30796	14087	22252	22418	30093	30093					-0.06116580823641016
LIPPSLQGV	9	Unmodified	_LIPPSLQGV_					0	0	0		ENSG00000177666|ENST00000336615|PNPLA2;STIM1-PNPLA2|1|fusion;ENST00000525250.5_1_11:821680-823850:+|nuORF	ENSG00000177666|ENST00000336615|PNPLA2	ENSG00000177666|ENST00000336615|PNPLA2	MULTI-MSMS	A375_MHC_IP_R1	1	462.6816101074219	2	462.28166	922.548768	-0.16554	-7.6524E-05	0.035286	1.6312E-05	-0.13025	-6.0212E-05	462.28166953544115	93.61	1.4719	93.61	92.871	94.343	0					48	28	2	0	0	0	0.22528	1	34333	34333		36.127	9.2434	1	1692000			30797	8099	22253	22419	30094	30094					0.08439545936960258
LIPQDPTV	8	Unmodified	_LIPQDPTV_					0	0	0			REV__ENSG00000173705|ENST00000309558|SUSD5	REV__ENSG00000173705|ENST00000309558|SUSD5	MSMS	A375_MHC_IP_R1	1	441.6819763183594	2	441.750193	881.485833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.627	1	70.627	70.127	71.127	0								0	0	0	0.16876	1	25647	25647		20.871	0	1		+		30798	21242	22254	22420	30095	30095					0.040349801488900994
LIPQRRSRK	9	Unmodified	_LIPQRRSRK_					0	0	0		ENSG00000183206|ENST00000358970|POTEC;ENSG00000166351|ENST00000299443|POTED	ENSG00000183206|ENST00000358970|POTEC	ENSG00000183206|ENST00000358970|POTEC	MULTI-MSMS	A375_MHC_IP_R1	1	385.2598571777344	3	385.247396	1152.72036	0.13343	5.1405E-05	-0.030235	-1.1648E-05	0.1032	3.9757E-05	385.24742482869055	24.492	0.40182	24.492	24.347	24.749	0					14	7	3	0	0	0	0.70411	1	6941	6941		6.6304	0.43853	1	6574800			30799	7065	22255	22421	30096	30096					0.15010715747962422
LIPSCFSSV	9	Unmodified	_LIPSCFSSV_					0	0	0			REV__ENST00000338785.7_1_21:38884979-38885171:+|nuORF	REV__ENST00000338785.7_1_21:38884979-38885171:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	476.5982360839844	2	476.744053	951.473554	-0.59974	-0.00028592	-0.088525	-4.2204E-05	-0.68826	-0.00032812	476.7440743484485	81.693	2.6379	82.436	81.06	83.698	0.74294					101	51	3	0	0	0	0.46038	1	30851	30851		21.747	3.6117	1	5584600	+		30800	23703	22256	22422	30097	30097					-0.004123795857822188
LIPSLDWLP	9	Unmodified	_LIPSLDWLP_					0	0	0		nc|ENSG00000175221|Q9Y2X0-2|MED16;nc|ENSG00000175221|Q9Y2X0-3|MED16;ENSG00000175221|ENST00000325464|MED16	nc|ENSG00000175221|Q9Y2X0-2|MED16	nc|ENSG00000175221|Q9Y2X0-2|MED16	MSMS	A375_MHC_IP_R2	2	526.9537353515625	2	527.302593	1052.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.642	1	49.4	48.9	49.9	0.75737								0	0	0	0.15331	1	18267	18267		16.942	4.4107	1				30801	7943	22257	22423	30098	30098					0.06644101625465737
LIQFPDVIV	9	Unmodified	_LIQFPDVIV_					0	0	0			REV__ENST00000497464.5_1_2:73957656-73964442:-|nuORF	REV__ENST00000497464.5_1_2:73957656-73964442:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	522.3848876953125	2	522.310418	1042.60628	-0.77278	-0.00040363	-0.076031	-3.9712E-05	-0.84881	-0.00044334	522.3103149530223	134.55	0.405	134.55	134.42	134.83	0					20	7	3	0	0	0	0.53748	1	51926	51926		18.146	0	1	30182000	+		30802	19407	22258	22424	30099	30099					0.08668388142518779
LIQFPDVIV	9	Unmodified	_LIQFPDVIV_					0	0	0			REV__ENST00000497464.5_1_2:73957656-73964442:-|nuORF	REV__ENST00000497464.5_1_2:73957656-73964442:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	522.7096557617188	2	522.310418	1042.60628	-0.47633	-0.00024879	-0.18901	-9.8721E-05	-0.66534	-0.00034751	522.310257428399	134.43	0.45805	134.57	134.39	134.85	0.13901					24	8	4	0	0	0	0.14422	1	52884	52884		43.858	0	1	29505000	+		30803	19407	22258	22424	30100	30100					0.08668388142518779
LIQIIEEP	8	Unmodified	_LIQIIEEP_					0	0	0			REV__nc|ENSG00000150054|Q5T2T1-2|MPP7	REV__nc|ENSG00000150054|Q5T2T1-2|MPP7	MSMS	A375_MHC_IP_R1	1	477.7232666015625	2	477.778951	953.543348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107	1	107	106.5	107.5	0								0	0	0	0.16876	1	39270	39270		9.3474	0	1		+		30804	19706	22259	22425	30101	30101					0.06471822354467349
LIQKDFTV	8	Unmodified	_LIQKDFTV_					0	0	0		tr|U7SSX4|U7SSX4_FUSNUDUF3102domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01534PE=4SV=1	tr|U7SSX4|U7SSX4_FUSNUDUF3102domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01534PE=4SV=1	tr|U7SSX4|U7SSX4_FUSNUDUF3102domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01534PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	481.6785583496094	2	482.279118	962.543683	-0.48957	-0.00023611	0.71048	0.00034265	0.22091	0.00010654	482.2795263145067	69.411	1.0656	70.145	69.829	70.895	0.73421					23	20	2	0	0	0	0.8211	1	26315	26315		23.148	0	1	2006900			30805	29653	22260	22426	30102	30102					0.06091242074319325
LIQKIKRKKP	10	Unmodified	_LIQKIKRKKP_					0	0	0		ENST00000199940.10_2_2:210372350-210489846:+|nuORF;ENST00000360351.8_2_2:210444452-210489846:+|nuORF	ENST00000199940.10_2_2:210372350-210489846:+|nuORF	ENST00000199940.10_2_2:210372350-210489846:+|nuORF	MSMS	A375_MHC_IP_R1	1	626.4368896484375	2	626.434807	1250.85506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.5	1	105.5	105	106	0								0	0	0	0.15591	1	38730	38730		1.6526	0.17072	1				30806	10076	22261	22427	30103	30103					0.23966776169845616
LIQLLPPVWE	10	Unmodified	_LIQLLPPVWE_					0	0	0		nc|ENSG00000173805|P54257-4|HAP1	nc|ENSG00000173805|P54257-4|HAP1	nc|ENSG00000173805|P54257-4|HAP1	MULTI-MSMS	A375_MHC_IP_R1	1	604.7598266601562	2	604.357899	1206.70125	-0.70463	-0.00042585	1.2865	0.00077751	0.58188	0.00035167	604.359849842881	142.93	1.0086	142.93	142.49	143.49	0					27	19	2	0	0	0	0.71944	1	54768	54768		3.5965	0.60125	1	1737800			30807	14771	22262	22428	30104	30104					0.10616321613701984
LIQLYLFQRK	10	Unmodified	_LIQLYLFQRK_					0	0	0			REV__ENST00000479838.2_1_7:104742652-104742796:+|nuORF	REV__ENST00000479838.2_1_7:104742652-104742796:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	442.2623596191406	3	441.271207	1320.79179	-0.55421	-0.00024456	-0.78416	-0.00034603	-1.3384	-0.00059059	441.2712005832195	34.973	0.353	35.736	35.525	35.878	0.76338					15	6	4	0	0	0	0.72006	1	12612	12612		3.3196	0	1	2129300	+		30808	25239	22263	22429	30105	30105					0.14422790661956242
LIQLYLFQRK	10	Unmodified	_LIQLYLFQRK_					0	0	0			REV__ENST00000479838.2_1_7:104742652-104742796:+|nuORF	REV__ENST00000479838.2_1_7:104742652-104742796:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	441.271207	1320.79179	-0.55421	-0.00024456	-0.78416	-0.00034603	-1.3384	-0.00059059	441.2712005832195	34.973	0.353	35.736	35.525	35.878	0.76338	-0.15251	-0.00097809	NaN	3.3196	15	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2129300	+		30809	25239	22263	22429							0.14422790661956242
LIQQVFES	8	Unmodified	_LIQQVFES_					0	0	0		ENSG00000160224|ENST00000291582|AIRE	ENSG00000160224|ENST00000291582|AIRE	ENSG00000160224|ENST00000291582|AIRE	MULTI-SECPEP	A375_MHC_IP_R2	2	963.2957153320312	1	963.514573	962.507297	-0.072369	-6.9728E-05	0.31042	0.0002991	0.23806	0.00022937	963.5149455119321	126.77	0.91026	127.03	126.3	127.21	0.26593					22	17	2	0	0	0	0.972	1	49550	49550		5.2307	0.90143	1	43983000			30810	6408	22264	22430	30106	30106					0.024543651776298248
LIRAIFLMLL	10	Unmodified	_LIRAIFLMLL_					0	0	0			REV__tr|U7T535|U7T535_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00420PE=4SV=1	REV__tr|U7T535|U7T535_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00420PE=4SV=1	MSMS	A375_MHC_IP_R2	2	401.59130859375	3	401.594634	1201.76207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.804	1	31.523	31.023	32.023	0.71857								0	0	0	0.15531	1	10852	10852		3.5871	0.95582	1		+		30811	28817	22265	22431	30107	30107					0.1692613539228205
LIRCRYWCRRR	11	Unmodified	_LIRCRYWCRRR_					0	0	0			REV__ENSG00000272333|ENST00000420124|KMT2B	REV__ENSG00000272333|ENST00000420124|KMT2B	MSMS	A375_MHC_IP_R2	2	790.90087890625	2	790.929906	1579.84526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.59	1	128.82	128.32	129.32	0.23946								0	0	0	0.16297	1	50501	50501		3.2813	0	1		+		30812	22947	22266	22432	30108	30108					0.07852941621172249
LIRGRIFFKIW	11	Unmodified	_LIRGRIFFKIW_					0	0	0		ENSG00000148950|ENST00000532287|IMMP1L	ENSG00000148950|ENST00000532287|IMMP1L	ENSG00000148950|ENST00000532287|IMMP1L	MULTI-MSMS	A375_MHC_IP_R1	1	484.03448486328125	3	483.63448	1447.88161	-0.56632	-0.00027389	0.50366	0.00024359	-0.062655	-3.0302E-05	483.63462475925104	132.91	1.1238	132.91	132.54	133.66	0					48	21	3	0	0	0	0.73881	1	51279	51279		0.50596	0.50596	1	6802100			30813	5775	22267	22433	30109	30109					0.17558465061210882
LIRGRIFFKIW	11	Unmodified	_LIRGRIFFKIW_					0	0	0		ENSG00000148950|ENST00000532287|IMMP1L	ENSG00000148950|ENST00000532287|IMMP1L	ENSG00000148950|ENST00000532287|IMMP1L	MULTI-MSMS	A375_MHC_IP_R2	2	484.03424072265625	3	483.63448	1447.88161	-0.52571	-0.00025425	0.40131	0.00019409	-0.1244	-6.0162E-05	483.63458901359246	132.89	1.0135	133.05	132.69	133.7	0.16487					48	19	3	0	0	0	0.73881	1	52276	52276		0.50596	0.50596	1	4216400			30814	5775	22267	22433	30110	30110					0.17558465061210882
LIRIYYWYWRR	11	Unmodified	_LIRIYYWYWRR_					0	0	0		ABHD6|p.T147Pfs*56|1|0.49|ENSG00000163686|chr3:58270980-58270980|A/-|frameshift_variant;ENSG00000163686|ENST00000478253|ABHD6	ABHD6|p.T147Pfs*56|1|0.49|ENSG00000163686|chr3:58270980-58270980|A/-|frameshift_variant	ABHD6|p.T147Pfs*56|1|0.49|ENSG00000163686|chr3:58270980-58270980|A/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	844.48388671875	2	844.464627	1686.9147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.761	1	80.506	80.006	81.006	0.74474								0	0	0	0.1636	1	30275	30275		0	0	1				30815	20	22268	22434	30111	30111					0.0987204711323102
LIRKKKVKR	9	Unmodified	_LIRKKKVKR_					0	0	0			REV__ENST00000404867.7_1_5:168093318-168093375:-|nuORF	REV__ENST00000404867.7_1_5:168093318-168093375:-|nuORF	MSMS	A375_MHC_IP_R2	2	585.0391845703125	2	584.921867	1167.82918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.263	1	83.006	82.506	83.506	0.74293								0	0	0	0.15486	1	31248	31248		2.3027	1.778	1		+		30816	24431	22269	22435	30112	30112					0.2519792671826053
LIRLIIVKDP	10	Unmodified	_LIRLIIVKDP_					0	0	0			REV__ENST00000476160.1_1_X:103041108-103041682:+|nuORF	REV__ENST00000476160.1_1_X:103041108-103041682:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1180.38525390625	1	1179.78236	1178.77508	-0.64076	-0.00075596	4.1426	0.0048873	3.5018	0.0041314	1180.7885078914749	123.38	0.25098	123.38	123.18	123.44	0					5	4	2	0	0	0	0.94421	1	46017	46017		0.40072	0	1	11633000	+		30817	25180	22270	22436	30113	30113					0.19284289776032892
LIRLQNENL	9	Unmodified	_LIRLQNENL_					0	0	0			REV__ENSG00000146858|ENST00000275766|ZC3HAV1L	REV__ENSG00000146858|ENST00000275766|ZC3HAV1L	MSMS	A375_MHC_IP_R2	2	556.8846435546875	2	556.824755	1111.63496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.66	1	108.41	107.91	108.91	0.75436								0	0	0	0.15486	1	40667	40667		13.508	0	1		+		30818	19555	22271	22437	30114	30114					0.08360505771634053
LIRNNLTV	8	Unmodified	_LIRNNLTV_					0	0	0		nc|ENSG00000121210|A2VDJ0-2|TMEM131L;nc|ENSG00000121210|A2VDJ0-6|TMEM131L;nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L	nc|ENSG00000121210|A2VDJ0-2|TMEM131L	nc|ENSG00000121210|A2VDJ0-2|TMEM131L	MULTI-MSMS	A375_MHC_IP_R1	1	942.972412109375	1	942.573091	941.565815	-0.19762	-0.00018627	-0.42162	-0.0003974	-0.61923	-0.00058367	942.5733493283652	84.861	0.3084	84.861	84.647	84.955	0					8	5	2	0	0	0	0.7773	1	31124	31124		4.756	0	1	1824300			30819	3711	22272	22438	30115	30115					0.09269466542741611
LIRNTTRRL	9	Unmodified	_LIRNTTRRL_					0	0	0			REV__ENSG00000155087|ENST00000285402|ODF1	REV__ENSG00000155087|ENST00000285402|ODF1	MULTI-SECPEP	A375_MHC_IP_R1	1	382.3033447265625	3	381.575401	1141.70437	0.66596	0.00025411	1.5331	0.00058501	2.1991	0.00083913	381.9102311894396	22.024	0.20199	22.024	21.911	22.113	0					5	3	2	0	0	0	0.78753	1	5870	5870		4.897	1.9018	1	436140	+		30820	19913	22273	22439	30116	30116					0.13919009511073455
LIRWIRQMKTF	11	Unmodified	_LIRWIRQMKTF_					0	0	0		ENST00000467010.2_1_8:92169765-92170749:+|nuORF	ENST00000467010.2_1_8:92169765-92170749:+|nuORF	ENST00000467010.2_1_8:92169765-92170749:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	498.37921142578125	3	497.958746	1490.85441	-0.73768	-0.00036734	-0.024371	-1.2136E-05	-0.76206	-0.00037947	498.2930001330138	148.96	1.0883	148.96	148.61	149.69	0					36	23	3	0	0	0	1.0015	1	56918	56918		0.073264	0	1	137010			30821	12271	22274	22440	30117	30117					0.12861613458494503
LIRWLDWIKKV	11	Unmodified	_LIRWLDWIKKV_					0	0	0			REV__COL21A1|p.E877Dfs*67|1|0.24|ENSG00000124749|chr6:56059220-56059221|-/G|frameshift_variant	REV__COL21A1|p.E877Dfs*67|1|0.24|ENSG00000124749|chr6:56059220-56059221|-/G|frameshift_variant	MSMS	A375_MHC_IP_R2	2	490.6234436035156	3	490.63789	1468.89184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.159	1	86.892	86.392	87.392	0.733								0	0	0	0.16305	1	32764	32764		2.8433	0.21205	1		+		30822	15824	22275	22441	30118	30118					0.17615027995748278
LIRYASVY	8	Unmodified	_LIRYASVY_					0	0	0			REV__ENSG00000057019|ENST00000326840|DCBLD2	REV__ENSG00000057019|ENST00000326840|DCBLD2	MULTI-SECPEP	A375_MHC_IP_R2	2	492.1892395019531	2	492.779285	983.544017	-0.5284	-0.00026038	1.1578	0.00057055	0.62942	0.00031016	492.7798369539216	106.09	0.50871	106.85	106.58	107.09	0.75977					12	9	2	0	0	0	0.93661	1	40151	40151		21.747	9.2151	1	887050	+		30823	16424	22276	22442	30119	30119					0.05158661794177988
LIRYNNYD	8	Unmodified	_LIRYNNYD_					0	0	0		nc|ENSG00000185973|Q9NVH6-7|TMLHE;nc|ENSG00000185973|Q9NVH6-6|TMLHE;nc|ENSG00000185973|Q9NVH6-5|TMLHE;ENSG00000185973|ENST00000334398|TMLHE;nc|ENSG00000185973|Q9NVH6-8|TMLHE	nc|ENSG00000185973|Q9NVH6-7|TMLHE	nc|ENSG00000185973|Q9NVH6-7|TMLHE	MULTI-MSMS	A375_MHC_IP_R2	2	357.44903564453125	3	357.513696	1069.51926	-0.52711	-0.00018845	-0.096158	-3.4378E-05	-0.62327	-0.00022283	357.5136297192326	19.964	1.9273	20.574	19.892	21.819	0.61029					111	37	4	0	0	0	0.77702	1	6005	6005		3.9444	0.35734	1	19494000			30824	8713	22277	22443	30120	30120					-0.012720180792030078
LIRYTVDNRG	10	Unmodified	_LIRYTVDNRG_					0	0	0			REV__nc|ENSG00000135333|Q15375-2|EPHA7	REV__nc|ENSG00000135333|Q15375-2|EPHA7	MULTI-SECPEP	A375_MHC_IP_R1	1	402.30328369140625	3	402.891166	1205.65167	-0.46877	-0.00018886	-2.958	-0.0011917	-3.4268	-0.0013806	403.22375225497075	27.42	0.45447	27.42	27.28	27.735	0					13	8	2	0	0	0	0.90513	1	8448	8448		10.899	0	1	3693700	+		30825	18843	22278	22444	30121	30121					0.0570700665757613
LISGEVNLRS	10	Unmodified	_LISGEVNLRS_					0	0	0		PCDHB14|p.P296L|1|0.31|ENSG00000120327|chr5:141224392-141224392|C/T|missense_variant	PCDHB14|p.P296L|1|0.31|ENSG00000120327|chr5:141224392-141224392|C/T|missense_variant	PCDHB14|p.P296L|1|0.31|ENSG00000120327|chr5:141224392-141224392|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	543.7396240234375	2	544.308938	1086.60332	-0.36833	-0.00020048	-0.31583	-0.00017191	-0.68416	-0.0003724	544.3086784305054	127.92	1.4196	127.92	127.52	128.94	0					54	27	2	0	0	0	0.9269	1	48965	48965		3.5965	0	1	59783000			30826	15133	22279	22445	30122	30122					0.06348513017701407
LISGGNKKWY	10	Unmodified	_LISGGNKKWY_					0	0	0			REV__ENSG00000137509|ENST00000313010|PRCP	REV__ENSG00000137509|ENST00000313010|PRCP	MULTI-SECPEP	A375_MHC_IP_R1	1	583.7215576171875	2	583.321848	1164.62914	-0.26607	-0.0001552	-0.29254	-0.00017064	-0.55861	-0.00032585	583.3218081896235	61.392	0.35831	61.392	61.227	61.585	0					10	6	2	0	0	0	0.88038	1	22176	22176		31.268	15.421	1	1608800	+		30827	19016	22280	22446	30123	30123					0.053414072599935025
LISGVGIFMM	10	Oxidation (M)	_LISGVGIFM(Oxidation (M))M_		LISGVGIFM(0.5)M(0.5)		LISGVGIFM(0)M(0)	0	0	1		SLC30A9|p.S310L|1|0.09|ENSG00000014824|chr4:42063018-42063018|C/T|missense_variant;ENSG00000014824|ENST00000264451|SLC30A9	SLC30A9|p.S310L|1|0.09|ENSG00000014824|chr4:42063018-42063018|C/T|missense_variant	SLC30A9|p.S310L|1|0.09|ENSG00000014824|chr4:42063018-42063018|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	542.6821899414062	2	542.282489	1082.55042	-0.52802	-0.00028633	-0.18399	-9.9775E-05	-0.71201	-0.00038611	542.2826188816564	96.752	0.91342	96.752	96.274	97.187	0					42	17	4	0	0	0	0.055257	1	35520	35520		74.423	32.328	2	5944200			30828	1031	22281	22447	30124	30124		6;7			0.012450956390239298
LISIFEHKI	9	Unmodified	_LISIFEHKI_					0	0	0		ENSG00000141424|ENST00000269187|SLC39A6	ENSG00000141424|ENST00000269187|SLC39A6	ENSG00000141424|ENST00000269187|SLC39A6	MULTI-MSMS	A375_MHC_IP_R2	2	367.6211853027344	3	367.221853	1098.64373	-0.29443	-0.00010812	-0.13899	-5.1039E-05	-0.43342	-0.00015916	367.22168602996175	25.559	0.91563	26.219	25.889	26.805	0.65992					34	17	3	0	0	0	0.64136	1	8728	8728		12.241	12.241	1	11448000			30829	5237	22282	22448	30125	30125					0.09835479408138781
LISIGADVEI	10	Unmodified	_LISIGADVEI_					0	0	0			REV__tr|U7ST18|U7ST18_FUSNURibosomalRNAsmallsubunitmethyltransferaseEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01248PE=3SV=1	REV__tr|U7ST18|U7ST18_FUSNURibosomalRNAsmallsubunitmethyltransferaseEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01248PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	515.1793212890625	2	515.294965	1028.57538	-0.54664	-0.00028168	-1.4939	-0.00076981	-2.0406	-0.0010515	515.2937286245259	75.707	0.55272	75.707	75.514	76.067	0					16	10	2	0	0	0	0.78945	1	27603	27603		13.906	0	1	1149500	+		30830	28456	22283	22449	30126	30126					0.062231900375991245
LISIIGFSNI	10	Unmodified	_LISIIGFSNI_					0	0	0		nc|ENSG00000170190|O15375-2|SLC16A5;ENSG00000170190|ENST00000329783|SLC16A5	nc|ENSG00000170190|O15375-2|SLC16A5	nc|ENSG00000170190|O15375-2|SLC16A5	MULTI-SECPEP	A375_MHC_IP_R1	1	538.1782836914062	2	538.82115	1075.62775	-0.57073	-0.00030752	-0.2005	-0.00010803	-0.77122	-0.00041555	538.8210141380146	82.825	0.50397	82.825	82.571	83.075	0					25	9	3	0	0	0	0.64716	1	30231	30231		22.736	0	1	5772600			30831	7480	22284	22450	30127	30127					0.09295773171243127
LISLCLFPL	9	Unmodified	_LISLCLFPL_					0	0	0			REV__nc|ENSG00000102539|O43193-2|MLNR	REV__nc|ENSG00000102539|O43193-2|MLNR	MULTI-SECPEP	A375_MHC_IP_R1	1	510.2033996582031	2	509.803914	1017.59328	0.016841	8.5856E-06	-0.14917	-7.6049E-05	-0.13233	-6.7464E-05	509.8037206401819	114.54	2.0856	114.54	113.8	115.89	0					76	40	2	0	0	0	0.67221	1	42445	42445		4.756	0	1	9852300	+		30832	17224	22285	22451	30128	30128					0.08518233758763927
LISLPDYLL	9	Unmodified	_LISLPDYLL_					0	0	0		ENST00000399640.3_1_8:134470495-134470690:-|nuORF	ENST00000399640.3_1_8:134470495-134470690:-|nuORF	ENST00000399640.3_1_8:134470495-134470690:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	524.0371704101562	2	523.810251	1045.60595	-0.41644	-0.00021813	-3.5142	-0.0018408	-3.9307	-0.0020589	523.8094872382368	135.02	0.15169	135.16	135.05	135.2	0.13899					4	2	2	0	0	0	0.40041	1	53105	53105		11.64	3.047	1	468680			30833	11544	22286	22452	30129	30129					0.08496968422650752
LISNNEITV	9	Unmodified	_LISNNEITV_					0	0	0		tr|U7SVQ4|U7SVQ4_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01304PE=3SV=1	tr|U7SVQ4|U7SVQ4_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01304PE=3SV=1	tr|U7SVQ4|U7SVQ4_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01304PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	501.69744873046875	2	501.776939	1001.53933	-0.28209	-0.00014155	2.7742	0.001392	2.4921	0.0012505	501.7786586463171	91.927	0.7579	91.927	91.706	92.463	0					25	14	2	0	0	0	0.47368	1	33785	33785		26.884	2.2098	1	1007000			30834	29794	22287	22453	30130	30130					0.03861732860752909
LISQINKRY	9	Unmodified	_LISQINKRY_					0	0	0		ENSG00000196074|ENST00000357552|SYCP2;ENST00000474749.1_1_20:58460187-58461844:-|nuORF	ENSG00000196074|ENST00000357552|SYCP2	ENSG00000196074|ENST00000357552|SYCP2	MULTI-SECPEP	A375_MHC_IP_R2	2	568.2349243164062	2	567.835123	1133.65569	-0.67098	-0.00038101	-0.52075	-0.0002957	-1.1917	-0.00067671	567.8348958651118	60.978	0.40391	61.723	61.515	61.919	0.74503					11	7	2	0	0	0	0.67539	1	23107	23107		16.942	11.645	1	2103700			30835	8989	22288	22454	30131	30131					0.09421096151322672
LISQINKRY	9	Unmodified	_LISQINKRY_					0	0	0		ENSG00000196074|ENST00000357552|SYCP2;ENST00000474749.1_1_20:58460187-58461844:-|nuORF	ENSG00000196074|ENST00000357552|SYCP2	ENSG00000196074|ENST00000357552|SYCP2	MULTI-MATCH	A375_MHC_IP_R1	1		2	567.835123	1133.65569	-0.28623	-0.00016253	-0.4518	-0.00025655	-0.73803	-0.00041908	567.8348624688872	62.069	0.40894	62.069	61.891	62.3	0	0.17316	3.3109E-05	NaN	11.64	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1482100			30836	8989	22288	22454							0.09421096151322672
LISRRHLQFWK	11	Unmodified	_LISRRHLQFWK_					0	0	0		ENSG00000008853|ENST00000251822|RHOBTB2;nc|ENSG00000008853|Q9BYZ6-3|RHOBTB2;nc|ENSG00000008853|Q9BYZ6-2|RHOBTB2;ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000008853|ENST00000251822|RHOBTB2	ENSG00000008853|ENST00000251822|RHOBTB2	MULTI-SECPEP	A375_MHC_IP_R2	2	494.6861572265625	3	495.293005	1482.85719	-0.41344	-0.00020478	0.82123	0.00040675	0.40779	0.00020197	495.29348500205583	133.01	0.15189	133.17	133.04	133.2	0.16487					4	2	2	0	0	0	1.0011	1	52316	52316		0.08335	0	1	941990			30837	964	22289	22455	30132	30132					0.13507204907682535
LISYDRTL	8	Unmodified	_LISYDRTL_					0	0	0		ENSG00000166908|ENST00000354947|PIP4K2C;nc|ENSG00000166908|Q8TBX8-3|PIP4K2C	ENSG00000166908|ENST00000354947|PIP4K2C	ENSG00000166908|ENST00000354947|PIP4K2C	MULTI-SECPEP	A375_MHC_IP_R2	2	491.1738586425781	2	490.7742	979.533846	-0.5379	-0.00026399	-0.12049	-5.9132E-05	-0.65838	-0.00032312	490.7741187844965	82.831	0.35195	83.573	83.397	83.749	0.74287					11	6	2	0	0	0	0.94479	1	31488	31488		13.508	0	1	1323200			30838	7131	22290	22456	30133	30133					0.04326054068940266
LITDIIQLS	9	Unmodified	_LITDIIQLS_					0	0	0		nc|ENSG00000117600|Q7Z2D5-2|PLPPR4;nc|ENSG00000117600|Q7Z2D5-3|PLPPR4;ENSG00000117600|ENST00000370185|PLPPR4;nc|ENSG00000117600|Q7Z2D5|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	MULTI-SECPEP	A375_MHC_IP_R1	1	508.7047119140625	2	508.305332	1014.59611	-0.66091	-0.00033595	-0.14644	-7.4438E-05	-0.80736	-0.00041038	508.3051627835612	132.85	0.46002	132.85	132.69	133.15	0					21	8	4	0	0	0	0.030624	1	51236	51236		88.904	0	1	16024000			30839	3499	22291	22457	30134	30134					0.08939780417290422
LITDIIQLS	9	Unmodified	_LITDIIQLS_					0	0	0		nc|ENSG00000117600|Q7Z2D5-2|PLPPR4;nc|ENSG00000117600|Q7Z2D5-3|PLPPR4;ENSG00000117600|ENST00000370185|PLPPR4;nc|ENSG00000117600|Q7Z2D5|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	MULTI-SECPEP	A375_MHC_IP_R2	2	508.7048034667969	2	508.305332	1014.59611	-0.68808	-0.00034975	-0.074566	-3.7902E-05	-0.76264	-0.00038766	508.30516828551765	132.7	0.55875	132.87	132.64	133.2	0.16487					21	10	3	0	0	0	0.030624	1	52206	52206		88.904	0	1	15834000			30840	3499	22291	22457	30135	30135					0.08939780417290422
LITDKEVIY	9	Unmodified	_LITDKEVIY_					0	0	0		nc|ENSG00000171100|Q13496-2|MTM1;ENSG00000171100|ENST00000370396|MTM1;MTM1|p.I52T|1|0.64|ENSG00000171100|chrX:150598610-150598610|T/C|missense_variant;ENST00000306167.11_1_X:149761076-149807431:+|nuORF	nc|ENSG00000171100|Q13496-2|MTM1	nc|ENSG00000171100|Q13496-2|MTM1	MULTI-MSMS	A375_MHC_IP_R2	2	550.0037231445312	2	547.310615	1092.60668	-0.7701	-0.00042149	0.04854	2.6567E-05	-0.72156	-0.00039492	547.3105760752916	78.035	2.3404	78.778	78.315	80.656	0.74293					140	45	7	0	0	0	0.63811	1	29621	29621		12.532	3.1841	1	222770000			30841	7573	22292	22458	30136	30136					0.06407763071729278
LITELVHVKP	10	Unmodified	_LITELVHVKP_					0	0	0			REV__ENST00000415202.1_1_1:211849190-211858945:+|nuORF	REV__ENST00000415202.1_1_1:211849190-211858945:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	383.5961608886719	3	383.572775	1147.69649	-0.11998	-4.6022E-05	0.073342	2.8132E-05	-0.046642	-1.7891E-05	383.57263723519395	30.433	0.40571	31.151	30.86	31.266	0.71857					11	7	2	0	0	0	0.53946	1	10704	10704		27.223	4.487	1	992890	+		30842	24517	22293	22459	30137	30137					0.12855437470943798
LITIFQRYQP	10	Unmodified	_LITIFQRYQP_					0	0	0			REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF	REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	640.2630004882812	2	639.86388	1277.71321	-0.65137	-0.00041679	0.42453	0.00027164	-0.22684	-0.00014515	639.8640605854697	91.092	0.91354	91.826	91.463	92.376	0.73451					48	17	4	0	0	0	0.68889	1	34611	34611		21.537	0	1	22248000	+		30843	22514	22294	22460	30138	30138					0.08545938356905936
LITIFQRYQP	10	Unmodified	_LITIFQRYQP_					0	0	0			REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF	REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	639.86388	1277.71321	-0.57854	-0.00037018	0.71377	0.00045671	0.13523	8.6529E-05	639.8642280407022	91.835	0.90958	91.835	91.554	92.463	0	0.004433	0.00019947	NaN	21.537	48	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22849000	+		30844	22514	22294	22460							0.08545938356905936
LITLGVDQPI	10	Unmodified	_LITLGVDQPI_					0	0	0			REV__ENSG00000165868|ENST00000369209|HSPA12A	REV__ENSG00000165868|ENST00000369209|HSPA12A	MULTI-SECPEP	A375_MHC_IP_R1	1	535.2183837890625	2	534.818607	1067.62266	-0.72344	-0.00038691	1.2007	0.00064216	0.47726	0.00025525	534.8188403481134	79.952	0.51151	79.952	79.625	80.136	0					22	9	3	0	0	0	0.79457	1	29160	29160		20.415	2.2682	1	2224500	+		30845	20632	22295	22461	30139	30139					0.09155469308620923
LITQATLLYT	10	Unmodified	_LITQATLLYT_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	A375_MHC_IP_R1	1	379.2807922363281	3	379.556902	1135.64888	0.31508	0.00011959	0.029449	1.1178E-05	0.34453	0.00013077	379.5568079205315	43.898	0.45826	43.898	43.655	44.113	0					18	8	3	0	0	0	0.7086	1	15301	15301		8.4443	0.28878	1	5411100			30846	9310	22296	22462	30140	30140					0.08647738480090084
LIVALLRQP	9	Unmodified	_LIVALLRQP_					0	0	0			REV__nc|ENSG00000143502|Q5VX71-4|SUSD4	REV__nc|ENSG00000143502|Q5VX71-4|SUSD4	MULTI-MSMS	A375_MHC_IP_R2	2	1023.8132934570312	1	1022.67208	1021.6648	0.039543	4.0439E-05	2.4413	0.0024966	2.4808	0.002537	1023.6742583975276	123.41	0.20078	123.78	123.68	123.88	0.37661					5	3	2	0	0	0	0.75523	1	47376	47376		2.0598	0	1	20167000	+		30847	19365	22297	22463	30141	30141					0.15483489507664672
LIVCSSIENL	10	Unmodified	_LIVCSSIENL_					0	0	0			REV__tr|U7STJ1|U7STJ1_FUSNUtetrahydrofolatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01423PE=3SV=1	REV__tr|U7STJ1|U7STJ1_FUSNUtetrahydrofolatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01423PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	363.9065246582031	3	364.198609	1089.574	0.37579	0.00013686	-0.5875	-0.00021397	-0.21171	-7.7104E-05	364.1963981014361	51.702	0.45747	51.702	51.525	51.982	0					19	8	3	0	0	0	0.9269	1	18449	18449		3.5871	0	1	1889100	+		30848	28491	22298	22464	30142	30142					0.0327923267720962
LIVDAERLL	9	Unmodified	_LIVDAERLL_					0	0	0			REV__ENST00000481964.5_1_20:31962005-31989248:-|nuORF	REV__ENST00000481964.5_1_20:31962005-31989248:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	521.6717529296875	2	521.318774	1040.623	-0.3208	-0.00016724	0.80368	0.00041897	0.48287	0.00025173	521.3185698335899	82.361	0.20429	82.361	82.265	82.469	0					5	3	2	0	0	0	0.76827	1	30085	30085		3.5965	1.9439	1	863660	+		30849	25270	22299	22465	30143	30143					0.10430889028475576
LIVGKVASL	9	Unmodified	_LIVGKVASL_					0	0	0		ENST00000311268.7_1_12:6930982-6932840:+|nuORF	ENST00000311268.7_1_12:6930982-6932840:+|nuORF	ENST00000311268.7_1_12:6930982-6932840:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	449.9850769042969	2	450.299853	898.585153	-0.73482	-0.00033089	-0.22574	-0.00010165	-0.96055	-0.00043254	450.2998601956657	33.52	0.30419	34.272	34.146	34.45	0.75225					6	5	2	0	0	0	0.63327	1	12028	12028		24.021	5.8742	1	1434700			30850	10627	22300	22466	30144	30144					0.13180422833659122
LIVISHHSF	9	Unmodified	_LIVISHHSF_					0	0	0			REV__ENST00000565698.5_2_16:28109346-28109856:-|nuORF	REV__ENST00000565698.5_2_16:28109346-28109856:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	351.9292907714844	3	351.534431	1051.58147	-0.61636	-0.00021667	0.71382	0.00025093	0.097455	3.4259E-05	351.5345953716327	38.523	0.50899	39.297	39.047	39.556	0.77451					21	9	3	0	0	0	0.52144	1	14083	14083		16.149	0.90062	1	4524100	+		30851	26232	22301	22467	30145	30145					0.05773753059793307
LIVMRYCNKAP	11	Unmodified	_LIVMRYCNKAP_					0	0	0			REV__ENSG00000108551|ENST00000225688|RASD1	REV__ENSG00000108551|ENST00000225688|RASD1	MULTI-SECPEP	A375_MHC_IP_R1	1	654.7525024414062	2	654.351768	1306.68898	-0.52421	-0.00034302	0.24258	0.00015873	-0.28163	-0.00018429	654.3514032571297	80.952	0.45848	80.952	80.693	81.151	0					14	8	2	0	0	0	0.9754	1	29632	29632		17.113	0.96379	1	1802700	+		30852	17536	22302	22468	30146	30146					0.04790638607346409
LIVQLDSDMI	10	Unmodified	_LIVQLDSDMI_					0	0	0		SLC34A3|p.M512Hfs*81|1|0.67|ENSG00000198569|chr9:137236143-137236144|-/G|frameshift_variant;ENSG00000198569|ENST00000673835|SLC34A3	SLC34A3|p.M512Hfs*81|1|0.67|ENSG00000198569|chr9:137236143-137236144|-/G|frameshift_variant	SLC34A3|p.M512Hfs*81|1|0.67|ENSG00000198569|chr9:137236143-137236144|-/G|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	573.2814331054688	2	573.807382	1145.60021	-0.41308	-0.00023703	-0.92737	-0.00053213	-1.3404	-0.00076916	573.8062271041002	86.502	0.25296	86.502	86.426	86.679	0					5	4	2	0	0	0	0.89109	1	31752	31752		7.2892	6.9822	1	1283600			30853	9285	22303	22469	30147	30147					0.033235018486720946
LIVRCKHHSSQ	11	Unmodified	_LIVRCKHHSSQ_					0	0	0			REV__nc|ENSG00000204644|Q9NU63|ZFP57	REV__nc|ENSG00000204644|Q9NU63|ZFP57	MULTI-MSMS	A375_MHC_IP_R2	2	654.7533569335938	2	654.353688	1306.69282	-0.83165	-0.0005442	-0.22108	-0.00014466	-1.0527	-0.00068886	654.3535876724535	76.557	0.76154	77.297	76.843	77.604	0.74052					25	14	3	0	0	0	0.70017	1	29047	29047		19.362	0	1	3268400	+		30854	22534	22304	22470	30148	30148					0.05174444425438196
LIVSFDGATHF	11	Unmodified	_LIVSFDGATHF_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MSMS	A375_MHC_IP_R1	1	604.077392578125	2	603.811313	1205.60807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.191	1	72.191	71.691	72.691	0								0	0	0	0.16166	1	26257	26257		10.074	1.4806	1		+		30855	20554	22305	22471	30149	30149					0.013493971604702892
LIVSPFGSTV	10	Unmodified	_LIVSPFGSTV_					0	0	0			REV__ENST00000494448.5_1_11:62379695-62379848:-|nuORF	REV__ENST00000494448.5_1_11:62379695-62379848:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	510.6919860839844	2	510.292225	1018.5699	-0.33197	-0.0001694	-0.18376	-9.3772E-05	-0.51574	-0.00026318	510.292054670202	72.599	1.5706	72.599	71.917	73.488	0					84	30	5	0	0	0	0.17045	1	26554	26554		52.268	2.7411	1	56547000	+		30856	25436	22306	22472	30150	30150					0.06135511245827274
LIWDIQLFK	9	Unmodified	_LIWDIQLFK_					0	0	0		ENST00000320027.9_1_13:31725750-31725810:-|nuORF	ENST00000320027.9_1_13:31725750-31725810:-|nuORF	ENST00000320027.9_1_13:31725750-31725810:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	392.96575927734375	3	392.56562	1174.67503	-0.46628	-0.00018305	-0.15639	-6.1392E-05	-0.62267	-0.00024444	392.56547253341677	23.626	0.40611	24.257	24.079	24.485	0.63014					13	7	2	0	0	0	0.71358	1	7652	7652		5.7834	0.38072	1	2769000			30857	10686	22307	22473	30151	30151					0.09468052442207409
LIWDMAPIV	9	Unmodified	_LIWDMAPIV_					0	0	0			REV__ENST00000262811.10_1_19:18261341-18261566:+|nuORF	REV__ENST00000262811.10_1_19:18261341-18261566:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	529.69140625	2	529.291171	1056.56779	-0.42344	-0.00022412	0.74587	0.00039478	0.32243	0.00017066	529.2916238366699	111.16	0.40947	111.16	110.9	111.31	0					12	7	2	0	0	0	0.3243	1	40751	40751		36.044	0	1	1520300	+		30858	23214	22308	22474	30152	30152					0.04176759236338512
LIWDRRGLEQF	11	Unmodified	_LIWDRRGLEQF_					0	0	0			REV__INHBE|p.W261R|1|0.17|ENSG00000139269|chr12:57456576-57456576|T/A|missense_variant	REV__INHBE|p.W261R|1|0.17|ENSG00000139269|chr12:57456576-57456576|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	478.6613464355469	3	478.261371	1431.76228	-0.40937	-0.00019579	0.29295	0.00014011	-0.11642	-5.5679E-05	478.26165397084907	50.164	0.40914	50.164	49.947	50.357	0					15	7	3	0	0	0	0.99945	1	17768	17768		0.32927	0.32927	1	2892600	+		30859	26793	22309	22475	30153	30153					0.0636722664582976
LIWDRRGLEQF	11	Unmodified	_LIWDRRGLEQF_					0	0	0			REV__INHBE|p.W261R|1|0.17|ENSG00000139269|chr12:57456576-57456576|T/A|missense_variant	REV__INHBE|p.W261R|1|0.17|ENSG00000139269|chr12:57456576-57456576|T/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	478.261371	1431.76228	-0.81	-0.00038739	0.6765	0.00032354	-0.1335	-6.3849E-05	478.5958007729967	49.341	0.45376	50.099	49.894	50.348	0.75737	-0.032811	0.00032724	NaN	0.32927	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3635100	+		30860	26793	22309	22475							0.0636722664582976
LIWPLLSTV	9	Unmodified	_LIWPLLSTV_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF;ENST00000576862.5_1_17:5290923-5298221:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MULTI-MSMS	A375_MHC_IP_R1	1	1042.5751953125	1	1041.63429	1040.62702	-0.12544	-0.00013066	1.2632	0.0013158	1.1378	0.0011852	1041.6336989535369	135.2	0.15361	135.2	135.08	135.23	0					6	2	3	0	0	0	0.40079	1	52125	52125		24.674	3.8027	1	1799200			30861	2814	22310	22476	30154	30154					0.10832978522171288
LIWSSSCI	8	Unmodified	_LIWSSSCI_					0	0	0		ENST00000556422.5_1_14:57052576-57070625:+|nuORF	ENST00000556422.5_1_14:57052576-57070625:+|nuORF	ENST00000556422.5_1_14:57052576-57070625:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	907.9320678710938	1	908.454616	907.447339	-0.10924	-9.924E-05	-0.20232	-0.0001838	-0.31156	-0.00028304	908.4549682375507	118.8	1.925	118.8	117.41	119.33	0					47	37	2	0	0	0	0.96296	1	43280	43280		10.183	0.83596	1	66647000			30862	13440	22311	22477	30155	30155					-0.010086487572721126
LIWVRKIY	8	Unmodified	_LIWVRKIY_					0	0	0		OR1G1|p.H311Y|2|0.67|ENSG00000183024|chr17:3126621-3126621|G/A|missense_variant	OR1G1|p.H311Y|2|0.67|ENSG00000183024|chr17:3126621-3126621|G/A|missense_variant	OR1G1|p.H311Y|2|0.67|ENSG00000183024|chr17:3126621-3126621|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	545.7822265625	2	545.84222	1089.66989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.17	1	102.94	102.44	103.44	0.76428								0	0	0	0.16876	1	38720	38720		15.768	5.5848	1				30863	15065	22312	22478	30156	30156					0.12863793370274834
LIWVWVRFKCF	11	Unmodified	_LIWVWVRFKCF_					0	0	0			REV__ENST00000332843.2_1_8:120079524-120116116:+|nuORF	REV__ENST00000332843.2_1_8:120079524-120116116:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	375.52593994140625	4	374.961335	1495.81623	0.1474	5.527E-05	4.3052	0.0016143	4.4526	0.0016695	375.21354556219524	55.915	0.25583	56.665	56.489	56.745	0.75014					5	4	2	0	0	0	1.001	1	21066	21066		1.4551	0.24029	1	375970	+		30864	23642	22313	22479	30157	30157					0.08815727543856156
LIYDLTLV	8	Unmodified	_LIYDLTLV_					0	0	0			REV__IL1RAPL2|p.P476L|1|0.35|ENSG00000189108|chrX:105767027-105767027|C/T|missense_variant	REV__IL1RAPL2|p.P476L|1|0.35|ENSG00000189108|chrX:105767027-105767027|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	475.28936767578125	2	475.283869	948.553185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.774	1	70.508	70.008	71.008	0.73421								0	0	0	0.16876	1	26448	26448		11.114	0	1		+		30865	26788	22314	22480	30158	30158					0.07685010359864464
LIYFASTFSL	10	Unmodified	_LIYFASTFSL_					0	0	0			REV__nc|ENSG00000132824|Q13530-2|SERINC3	REV__nc|ENSG00000132824|Q13530-2|SERINC3	MULTI-MSMS	A375_MHC_IP_R2	2	581.71240234375	2	581.313158	1160.61176	-0.2826	-0.00016428	-0.31431	-0.00018271	-0.59691	-0.00034699	581.3126487700272	104.35	0.7132	105.11	104.85	105.56	0.76308					31	13	3	0	0	0	0.13478	1	39467	39467		56.177	4.7618	1	3007900	+		30866	18685	22315	22481	30159	30159					0.0378806693433944
LIYGSPPD	8	Unmodified	_LIYGSPPD_					0	0	0			REV__nc|ENSG00000179057|Q8N9C0|IGSF22	REV__nc|ENSG00000179057|Q8N9C0|IGSF22	MSMS	A375_MHC_IP_R2	2	431.28814697265625	2	431.221268	860.427984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.836	1	51.59	51.09	52.09	0.75406								0	0	0	0.16876	1	19124	19124		5.7604	0	1		+		30867	21540	22316	22482	30160	30160					-0.007812817765284308
LIYNFLWKIYL	11	Unmodified	_LIYNFLWKIYL_					0	0	0		ENST00000591074.1_1_17:58153002-58156275:-|nuORF	ENST00000591074.1_1_17:58153002-58156275:-|nuORF	ENST00000591074.1_1_17:58153002-58156275:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	496.24810791015625	3	495.954996	1484.84316	-0.31441	-0.00015593	2.8469	0.0014119	2.5324	0.001256	495.9567078172169	82.959	0.45358	82.959	82.772	83.226	0					11	8	2	0	0	0	0.73228	1	30330	30330		3.0723	0.81953	1	828460			30868	13792	22317	22483	30161	30161					0.12013114636056343
LIYSHTTPN	9	Unmodified	_LIYSHTTPN_					0	0	0			REV__ENSG00000120289|ENST00000378982|MAGEB4	REV__ENSG00000120289|ENST00000378982|MAGEB4	MULTI-SECPEP	A375_MHC_IP_R1	1	522.6558227539062	2	523.269281	1044.52401	-0.41923	-0.00021937	0.48032	0.00025134	0.06109	3.1967E-05	523.2692854500191	51.099	0.76078	51.099	50.814	51.575	0					40	14	4	0	0	0	0.74412	1	18217	18217		6.2058	0.47393	1	6766500	+		30869	18120	22318	22484	30162	30162					0.0035286606357658457
LIYYFPKY	8	Unmodified	_LIYYFPKY_					0	0	0			REV__nc|ENSG00000143379|Q15047-3|SETDB1	REV__nc|ENSG00000143379|Q15047-3|SETDB1	MSMS	A375_MHC_IP_R1	1	554.1325073242188	2	553.799686	1105.58482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.222	1	30.222	29.722	30.722	0								0	0	0	0.16876	1	9573	9573		13.508	0.97634	1		+		30870	19352	22319	22485	30163	30163					0.0362500311380245
LKADSGLKIL	10	Unmodified	_LKADSGLKIL_					0	0	0		ENST00000425839.1_1_6:30437447-30438005:+|nuORF	ENST00000425839.1_1_6:30437447-30438005:+|nuORF	ENST00000425839.1_1_6:30437447-30438005:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	529.96240234375	2	529.334424	1056.6543	-0.65812	-0.00034836	-3.4343	-0.0018179	-4.0924	-0.0021663	529.3341807744945	55.457	0.40464	56.208	55.933	56.337	0.75075					15	7	3	0	0	0	0.49514	1	20901	20901		28.495	0	1	1489700			30871	11795	22320	22486	30164	30164					0.12823462062578983
LKAEKLKFLG	10	Unmodified	_LKAEKLKFLG_					0	0	0			REV__ENST00000281830.3_1_2:223920011-223920131:+|nuORF	REV__ENST00000281830.3_1_2:223920011-223920131:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	382.9449768066406	3	382.91302	1145.71723	-0.15258	-5.8426E-05	-0.070284	-2.6913E-05	-0.22287	-8.5338E-05	383.2473278385303	45.359	0.45657	46.124	45.846	46.303	0.76519					14	8	2	0	0	0	0.70312	1	16902	16902		10.899	5.1155	1	1401400	+		30872	23320	22321	22487	30165	30165					0.15020027850596307
LKAGPSPK	8	Unmodified	_LKAGPSPK_					0	0	0		ENSG00000166105|ENST00000431683|GLB1L3;nc|ENSG00000166105|Q8NCI6-2|GLB1L3	ENSG00000166105|ENST00000431683|GLB1L3	ENSG00000166105|ENST00000431683|GLB1L3	MULTI-MSMS	A375_MHC_IP_R2	2	797.5184936523438	1	797.487965	796.480688	-0.91151	-0.00072692	0.038934	3.1049E-05	-0.87257	-0.00069587	797.4879785406006	67.546	0.6104	68.282	68.001	68.612	0.73631					18	11	2	0	0	0	0.77374	1	25509	25509		13.906	1.3745	1	5262700			30873	7023	22322	22488	30166	30166					0.07430721076946156
LKAKGPRA	8	Unmodified	_LKAKGPRA_					0	0	0		nc|ENSG00000082175|P06401-5|PGR;ENSG00000082175|ENST00000325455|PGR	nc|ENSG00000082175|P06401-5|PGR	nc|ENSG00000082175|P06401-5|PGR	MULTI-SECPEP	A375_MHC_IP_R1	1	420.1847839355469	2	420.774337	839.534121	0.35914	0.00015112	-0.52857	-0.00022241	-0.16943	-7.1293E-05	420.77418616018076	49.63	0.35526	49.63	49.49	49.845	0					9	6	2	0	0	0	0.972	1	17597	17597		5.2307	3.1709	1	1266400			30874	1754	22323	22489	30167	30167					0.1079351857946449
LKALFKAL	8	Unmodified	_LKALFKAL_					0	0	0		SLFN12|p.R540T|1|0.43|ENSG00000172123|chr17:35411456-35411456|C/G|missense_variant;ENSG00000172123|ENST00000304905|SLFN12	SLFN12|p.R540T|1|0.43|ENSG00000172123|chr17:35411456-35411456|C/G|missense_variant	SLFN12|p.R540T|1|0.43|ENSG00000172123|chr17:35411456-35411456|C/G|missense_variant	MSMS	A375_MHC_IP_R1	1	452.332275390625	2	452.304939	902.595324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.85	1	134.85	134.35	135.35	0								0	0	0	0.16876	1	52000	52000		2.3027	0	1				30875	7679	22324	22490	30168	30168					0.14013030558885475
LKALFKAL	8	Unmodified	_LKALFKAL_					0	0	0		SLFN12|p.R540T|1|0.43|ENSG00000172123|chr17:35411456-35411456|C/G|missense_variant;ENSG00000172123|ENST00000304905|SLFN12	SLFN12|p.R540T|1|0.43|ENSG00000172123|chr17:35411456-35411456|C/G|missense_variant	SLFN12|p.R540T|1|0.43|ENSG00000172123|chr17:35411456-35411456|C/G|missense_variant	MSMS	A375_MHC_IP_R2	2	452.3324890136719	2	452.304939	902.595324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.97	1	135.11	134.61	135.61	0.13901								0	0	0	0.16876	1	53084	53084		2.3027	0	1				30876	7679	22324	22490	30169	30169					0.14013030558885475
LKALQKQLDI	10	Unmodified	_LKALQKQLDI_					0	0	0		nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-3|PKN2	nc|ENSG00000065243|Q16513-2|PKN2	nc|ENSG00000065243|Q16513-2|PKN2	MULTI-SECPEP	A375_MHC_IP_R1	1	391.2916564941406	3	390.579929	1168.71796	0.21107	8.2438E-05	0.80274	0.00031354	1.0138	0.00039597	390.58020319448815	28.706	0.20347	28.706	28.592	28.795	0					5	3	2	0	0	0	0.92603	1	8848	8848		8.9762	0	1	1054600			30877	1372	22325	22491	30170	30170					0.1403482249966146
LKAPWSRARS	10	Unmodified	_LKAPWSRARS_					0	0	0			REV__DAXX|p.R119W|1|0.32|ENSG00000204209|chr6:33321420-33321420|G/A|missense_variant	REV__DAXX|p.R119W|1|0.32|ENSG00000204209|chr6:33321420-33321420|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	391.6280517578125	3	391.228001	1170.66217	0.13694	5.3574E-05	0.27919	0.00010923	0.41613	0.0001628	391.2280292713273	31.338	0.91438	31.338	31.059	31.973	0					63	17	5	0	0	0	0.70012	1	10251	10251		10.899	4.2686	1	47989000	+		30878	15965	22326	22492	30171	30171					0.08367034102707294
LKDDLKLS	8	Unmodified	_LKDDLKLS_					0	0	0		ENSG00000072364|ENST00000265343|AFF4;AFF4|p.V760Ffs*82|1|0.17|ENSG00000072364|chr5:132896352-132896352|C/-|frameshift_variant;nc|ENSG00000072364|Q9UHB7-2|AFF4;AFF4|p.S884Vfs*42|1|0.25|ENSG00000072364|chr5:132889161-132889161|T/-|frameshift_variant;AFF4|p.K982Sfs*9|1|0.21|ENSG00000072364|chr5:132887565-132887581|CAAGTAATTCTTTAGCT/-|frameshift_variant	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MULTI-SECPEP	A375_MHC_IP_R2	2	466.6530456542969	2	466.276575	930.538597	-0.45832	-0.0002137	-0.14825	-6.9125E-05	-0.60657	-0.00028283	466.2765020757511	43.938	0.65633	44.707	44.43	45.086	0.7691					14	12	2	0	0	0	0.95424	1	16516	16516		19.257	0	1	1611700			30879	1537	22327	22493	30172	30172					0.07054938211717854
LKDLHRIYR	9	Unmodified	_LKDLHRIYR_					0	0	0		nc|ENSG00000135828|Q05823-2|RNASEL;ENSG00000135828|ENST00000367559|RNASEL	nc|ENSG00000135828|Q05823-2|RNASEL	nc|ENSG00000135828|Q05823-2|RNASEL	MULTI-MSMS	A375_MHC_IP_R1	1	607.760986328125	2	607.361839	1212.70913	-0.68075	-0.00041346	-0.011748	-7.1353E-06	-0.6925	-0.0004206	607.36175333989	145.12	0.67873	145.12	144.72	145.4	0					55	24	3	0	0	0	0.75978	1	55592	55592		1.6526	0	1	741980			30880	4715	22328	22494	30173	30173					0.11127893653838328
LKEAVKKKY	9	Unmodified	_LKEAVKKKY_					0	0	0			REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	MULTI-SECPEP	A375_MHC_IP_R1	1	370.2890319824219	3	369.569253	1105.68593	0.60885	0.00022501	-0.64052	-0.00023672	-0.031667	-1.1703E-05	369.5690291168162	21.935	0.35686	21.935	21.656	22.013	0					11	6	3	0	0	0	0.78798	1	5796	5796		0.18151	0.18151	1	785920	+		30881	18209	22329	22495	30174	30174					0.13731454816525002
LKEEERVLK	9	Unmodified	_LKEEERVLK_					0	0	0		nc|ENSG00000089234|Q7Z569-2|BRAP;ENSG00000089234|ENST00000419234|BRAP	nc|ENSG00000089234|Q7Z569-2|BRAP	nc|ENSG00000089234|Q7Z569-2|BRAP	MULTI-MSMS	A375_MHC_IP_R2	2	382.295654296875	3	381.895917	1142.66592	-0.36971	-0.00014119	0.20637	7.8813E-05	-0.16334	-6.238E-05	381.89595006822566	28.255	0.35429	28.934	28.706	29.06	0.67857					15	6	3	0	0	0	0.11638	1	9743	9743		47.732	0	1	9794500			30882	1922	22330	22496	30175	30175					0.10029659085898857
LKEEKLRQRL	10	Unmodified	_LKEEKLRQRL_					0	0	0			REV__ENSG00000144655|ENST00000273153|CSRNP1	REV__ENSG00000144655|ENST00000273153|CSRNP1	MULTI-SECPEP	A375_MHC_IP_R1	1	657.3052978515625	2	656.906611	1311.79867	-0.76554	-0.00050289	-0.68661	-0.00045104	-1.4522	-0.00095393	656.9060078518122	136.64	0.97726	136.64	136.46	137.44	0					35	18	4	0	0	0	0.94102	1	52627	52627		5.7319	0	1	8536400	+		30883	19438	22331	22497	30176	30176					0.15524103542543344
LKEEKLRQRL	10	Unmodified	_LKEEKLRQRL_					0	0	0			REV__ENSG00000144655|ENST00000273153|CSRNP1	REV__ENSG00000144655|ENST00000273153|CSRNP1	MULTI-SECPEP	A375_MHC_IP_R2	2	657.3054809570312	2	656.906611	1311.79867	-0.73035	-0.00047977	-0.65627	-0.00043111	-1.3866	-0.00091088	656.9060508641251	136.57	1.0321	136.68	136.55	137.58	0.11134					31	19	4	0	0	0	0.94102	1	53645	53645		5.7319	0	1	7839500	+		30884	19438	22331	22497	30177	30177					0.15524103542543344
LKEETSIKRRK	11	Unmodified	_LKEETSIKRRK_					0	0	0			REV__CYP19A1|p.R265K|1|0.35|ENSG00000137869|chr15:51215767-51215767|C/T|missense_variant	REV__CYP19A1|p.R265K|1|0.35|ENSG00000137869|chr15:51215767-51215767|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	463.6836242675781	3	463.284175	1386.8307	-0.47885	-0.00022184	-0.63176	-0.00029269	-1.1106	-0.00051453	463.28382365189185	132.38	2.0315	132.38	131.88	133.91	0					117	39	4	0	0	0	0.73891	1	51057	51057		0.40827	0	1	41434000	+		30885	15948	22332	22498	30178	30178					0.15275471225686488
LKEFAPQQL	9	Unmodified	_LKEFAPQQL_					0	0	0			REV__ENST00000244745.3_2_6:21594329-21594497:+|nuORF	REV__ENST00000244745.3_2_6:21594329-21594497:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	537.744873046875	2	537.303124	1072.5917	-0.78804	-0.00042342	-3.377	-0.0018145	-4.165	-0.0022379	537.3006275935197	25.576	0.20393	25.576	25.46	25.664	0					8	3	3	0	0	0	0.31606	1	7492	7492		47.749	7.799	1	2793500	+		30886	23106	22333	22499	30179	30179					0.058303159943761784
LKEFCGEFLK	10	Unmodified	_LKEFCGEFLK_					0	0	0		ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	MULTI-MSMS	A375_MHC_IP_R1	1	607.7139892578125	2	607.317917	1212.62128	-0.021778	-1.3226E-05	-2.9445	-0.0017883	-2.9663	-0.0018015	607.3140795626414	45.43	0.40222	45.43	45.183	45.585	0					23	7	5	0	0	0	0.67512	1	15923	15923		15.248	0.41021	1	3605000			30887	8163	22334	22500	30180	30180					0.023475119481872753
LKEFCGEFLK	10	Unmodified	_LKEFCGEFLK_					0	0	0		ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	MULTI-MATCH	A375_MHC_IP_R2	2		2	607.317917	1212.62128	-0.49063	-0.00029797	-4.4183	-0.0026833	-4.909	-0.0029813	607.814649031012	44.613	0.40538	45.382	45.138	45.543	0.76909	-0.0243	-0.00095216	NaN	15.248	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1624000			30888	8163	22334	22500							0.023475119481872753
LKEFDLQKKLK	11	Unmodified	_LKEFDLQKKLK_					0	0	0			REV__PCDHB13|p.E303K|1|0.3|ENSG00000187372|chr5:141215030-141215030|G/A|missense_variant	REV__PCDHB13|p.E303K|1|0.3|ENSG00000187372|chr5:141215030-141215030|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	464.3533020019531	3	463.953655	1388.83914	-0.70099	-0.00032522	-0.016841	-7.8134E-06	-0.71783	-0.00033304	463.95372936069975	62.413	0.60978	63.155	62.774	63.383	0.74263					27	11	4	0	0	0	0.72577	1	23645	23645		12.929	1.2973	1	5966300	+		30889	27733	22335	22501	30181	30181					0.16027025142307139
LKEFIHILY	9	Unmodified	_LKEFIHILY_					0	0	0		ENST00000556748.5_1_14:58666901-58681958:+|nuORF;ENST00000556312.5_1_14:58666935-58675849:+|nuORF;ENSG00000131966|ENST00000254286|ACTR10	ENST00000556748.5_1_14:58666901-58681958:+|nuORF	ENST00000556748.5_1_14:58666901-58681958:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	392.5842590332031	3	392.56562	1174.67503	-0.0063493	-2.4925E-06	0.050579	1.9856E-05	0.04423	1.7363E-05	392.56549646158453	24.682	0.75739	24.682	24.245	25.002	0					26	14	2	0	0	0	0.66474	1	7029	7029		10.151	0	1	5861100			30890	4361	22336	22502	30182	30182					0.09468052442230146
LKEGGSLAAK	10	Unmodified	_LKEGGSLAAK_					0	0	0		ENSG00000128908|ENST00000648947|INO80	ENSG00000128908|ENST00000648947|INO80	ENSG00000128908|ENST00000648947|INO80	MSMS	A375_MHC_IP_R2	2	487.1839904785156	2	487.287474	972.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.79	1	135.9	135.4	136.4	0.11134								0	0	0	0.15265	1	53364	53364		12.241	2.1667	1				30891	4168	22337	22503	30183	30183					0.07301742960260071
LKEIDKRKQKE	11	Unmodified	_LKEIDKRKQKE_					0	0	0			REV__UPF3B|p.R242Q|1|0.22|ENSG00000125351|chrX:119841158-119841158|C/T|missense_variant	REV__UPF3B|p.R242Q|1|0.22|ENSG00000125351|chrX:119841158-119841158|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	708.321044921875	2	707.922458	1413.83036	-0.84986	-0.00060163	-0.58248	-0.00041235	-1.4323	-0.001014	707.9219171034508	132.92	3.871	132.92	132.54	136.41	0					206	75	5	0	0	0	0.73807	2	51296	51296;51760		1.1933	0	1	273040000	+		30892	28959	22338	22504	30184;30185	30184					0.14000051505831834
LKEIDKRKQKE	11	Unmodified	_LKEIDKRKQKE_					0	0	0			REV__UPF3B|p.R242Q|1|0.22|ENSG00000125351|chrX:119841158-119841158|C/T|missense_variant	REV__UPF3B|p.R242Q|1|0.22|ENSG00000125351|chrX:119841158-119841158|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	707.922458	1413.83036	-0.67092	-0.00047496	-0.73656	-0.00052143	-1.4075	-0.00099639	707.9218206837392	132.85	3.1022	133.02	132.59	135.69	0.16487	0.049599	-9.7508E-05	NaN	1.1933	158	60	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251080000	+		30893	28959	22338	22504							0.14000051505831834
LKEIEELQYE	10	Unmodified	_LKEIEELQYE_					0	0	0			REV__tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1	REV__tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	431.9413757324219	3	431.890609	1292.65	-0.22107	-9.5477E-05	-1.2759	-0.00055105	-1.497	-0.00064653	431.89063131660504	33.294	1.0631	33.294	32.585	33.648	0					22	20	2	0	0	0	0.69726	1	10612	10612		13.519	0.64606	1	2827000	+		30894	28872	22339	22505	30186	30186					0.015379080583670657
LKEIHEKEVL	10	Unmodified	_LKEIHEKEVL_					0	0	0		ENSG00000130701|ENST00000252998|RBBP8NL	ENSG00000130701|ENST00000252998|RBBP8NL	ENSG00000130701|ENST00000252998|RBBP8NL	MULTI-MSMS	A375_MHC_IP_R1	1	413.6432800292969	3	413.243206	1236.70779	0.55927	0.00023111	0.46302	0.00019134	1.0223	0.00042245	413.2433573184426	21.928	0.65903	21.928	21.454	22.113	0					29	12	3	0	0	0	0.68638	1	5830	5830		9.2438	3.7205	1	2382800			30895	4263	22340	22506	30187	30187					0.09890214774395645
LKEIKKRFS	9	Unmodified	_LKEIKKRFS_					0	0	0		tr|U7SVV7|U7SVV7_FUSNUOxygen-independentcoproporphyrinogenIIIoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01354PE=4SV=1	tr|U7SVV7|U7SVV7_FUSNUOxygen-independentcoproporphyrinogenIIIoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01354PE=4SV=1	tr|U7SVV7|U7SVV7_FUSNUOxygen-independentcoproporphyrinogenIIIoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01354PE=4SV=1	MSMS	A375_MHC_IP_R1	1	383.6174621582031	3	383.576519	1147.70773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.115	1	45.115	44.615	45.615	0								0	0	0	0.15486	1	15773	15773		6.6304	0.43853	1				30896	29799	22341	22507	30188	30188					0.13978259565078588
LKEIRQRKIE	10	Unmodified	_LKEIRQRKIE_					0	0	0			REV__ENSG00000157856|ENST00000288710|DRC1	REV__ENSG00000157856|ENST00000288710|DRC1	MULTI-MSMS	A375_MHC_IP_R1	1	438.6730651855469	3	438.273499	1311.79867	-0.43342	-0.00018996	-0.69159	-0.0003031	-1.125	-0.00049306	438.273107945834	136.64	0.87291	136.64	136.46	137.33	0					41	16	5	0	0	0	0.72358	1	52614	52614		1.7423	0	1	14430000	+		30897	20049	22342	22508	30189	30189					0.15524103542543344
LKEIRQRKIE	10	Unmodified	_LKEIRQRKIE_					0	0	0			REV__ENSG00000157856|ENST00000288710|DRC1	REV__ENSG00000157856|ENST00000288710|DRC1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	438.273499	1311.79867	-0.43342	-0.00018996	-0.69159	-0.0003031	-1.125	-0.00049306	438.273107945834	136.64	0.87291	136.64	136.46	137.33	0	-0.021693	9.3113E-05	NaN	1.7423	41	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14430000	+		30898	20049	22342	22508							0.15524103542543344
LKEIRQRKIE	10	Unmodified	_LKEIRQRKIE_					0	0	0			REV__ENSG00000157856|ENST00000288710|DRC1	REV__ENSG00000157856|ENST00000288710|DRC1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	438.273499	1311.79867	-0.13692	-6.0008E-05	-0.83556	-0.0003662	-0.97248	-0.00042621	438.2730200686408	136.57	1.0297	136.68	136.45	137.48	0.11133	0.021693	-9.618E-05	NaN	1.7423	48	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14026000	+		30899	20049	22342	22508							0.15524103542543344
LKEKETKPKV	10	Unmodified	_LKEKETKPKV_					0	0	0			REV__ENSG00000067596|ENST00000262415|DHX8	REV__ENSG00000067596|ENST00000262415|DHX8	MULTI-MSMS	A375_MHC_IP_R2	2	401.25311279296875	3	400.583451	1198.72852	-0.40804	-0.00016346	-0.14495	-5.8064E-05	-0.55299	-0.00022152	400.5833830276676	24.745	0.25236	25.389	25.212	25.465	0.64368					10	4	3	0	0	0	0.69875	1	8145	8145		12.856	2.3285	1	3494600	+		30900	16533	22343	22509	30190	30190					0.1371080515407357
LKEKGFLKV	9	Unmodified	_LKEKGFLKV_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A;REV__ENST00000583079.1_1_17:18023566-18025792:+|nuORF	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-MSMS	A375_MHC_IP_R1	1	354.6109313964844	3	354.562099	1060.66447	0.020552	7.2869E-06	0.015417	5.4662E-06	0.035969	1.2753E-05	354.5620510545119	47.454	0.91001	47.454	47.263	48.173	0					37	17	3	0	0	0	0.70886	1	16856	16856		3.8763	0	1	17236000	+		30901	16952;26361	22344	22510	30191	30191					0.13656069787793967
LKEKLVSL	8	Unmodified	_LKEKLVSL_					0	0	0			REV__L1M5_dup28713|chr9:41761514-41762260:-|3.3150792434932708|0.2052438935151931|4.01|461.0|12|2|sense	REV__L1M5_dup28713|chr9:41761514-41762260:-|3.3150792434932708|0.2052438935151931|4.01|461.0|12|2|sense	MSMS	A375_MHC_IP_R2	2	465.3350830078125	2	465.305136	928.595718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.41	1	132.59	132.09	133.09	0.18953								0	0	0	0.16876	1	52085	52085		0.6015	0	1		+		30902	26881	22345	22511	30192	30192					0.12856405488071232
LKEKVRLRYKL	11	Unmodified	_LKEKVRLRYKL_					0	0	0		nc|ENSG00000125447|Q9NZ52-4|GGA3;ENSG00000125447|ENST00000537686|GGA3;nc|ENSG00000125447|Q9NZ52-2|GGA3	nc|ENSG00000125447|Q9NZ52-4|GGA3	nc|ENSG00000125447|Q9NZ52-4|GGA3	MSMS	A375_MHC_IP_R2	2	723.8367919921875	2	723.469378	1444.9242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.92	1	143.94	143.44	144.44	0.024414								0	0	0	0.16355	1	56230	56230		0.26902	0	1				30903	3962	22346	22512	30193	30193					0.21953815398774168
LKELHSRRRQN	11	Unmodified	_LKELHSRRRQN_					0	0	0		ENST00000501938.6_1_5:98105741-98105807:-|nuORF	ENST00000501938.6_1_5:98105741-98105807:-|nuORF	ENST00000501938.6_1_5:98105741-98105807:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	479.19207763671875	3	479.611285	1435.81203	-0.33292	-0.00015967	1.845	0.00088487	1.5121	0.0007252	479.61200367774177	82.774	0.25159	82.774	82.672	82.924	0					7	4	2	0	0	0	0.99507	1	30309	30309		2.084	1.6295	1	661530			30904	12787	22347	22513	30194	30194					0.11155354374500348
LKELVETI	8	Unmodified	_LKELVETI_					0	0	0			REV__ENSG00000244694|ENST00000339488|PTCHD4	REV__ENSG00000244694|ENST00000339488|PTCHD4	MULTI-SECPEP	A375_MHC_IP_R1	1	473.18719482421875	2	472.786776	943.558998	-0.6373	-0.00030131	1.3711	0.00064823	0.73378	0.00034692	472.7873829425964	66.485	0.40845	66.485	66.224	66.632	0					10	7	2	0	0	0	0.95423	1	24119	24119		7.9102	0	1	1155200	+		30905	22827	22348	22514	30195	30195					0.08496108871520391
LKEMKRWKARR	11	Unmodified	_LKEMKRWKARR_					0	0	0			REV__nc|ENSG00000106410|O60393-2|NOBOX	REV__nc|ENSG00000106410|O60393-2|NOBOX	MULTI-MSMS	A375_MHC_IP_R2	2	502.0359802246094	3	501.301395	1500.88236	-0.44128	-0.00022121	-0.16644	-8.3434E-05	-0.60772	-0.00030465	501.63556079300923	136.29	1.2318	136.4	136.04	137.28	0.11133					39	23	3	0	0	0	0.73828	2	53557	53557;53586		1.0136	0.91873	1	1728400	+		30906	17448	22349	22515	30196;30197	30196					0.15194936438592777
LKEMKRWKARR	11	Unmodified	_LKEMKRWKARR_					0	0	0			REV__nc|ENSG00000106410|O60393-2|NOBOX	REV__nc|ENSG00000106410|O60393-2|NOBOX	MULTI-SECPEP	A375_MHC_IP_R2	2	502.0359802246094	3	501.301395	1500.88236	-0.44128	-0.00022121	-0.16644	-8.3434E-05	-0.60772	-0.00030465	501.63556079300923	136.29	1.2318	136.4	136.04	137.28	0.11133					39	23	3	0	0	0	1.0013	1	53557	53557		1.0136	0.91873	1	1728400	+		30907	17448	22349	22515	30198	30198					0.15194936438592777
LKEQKERA	8	Unmodified	_LKEQKERA_					0	0	0		ENSG00000185522|ENST00000329451|LMNTD2	ENSG00000185522|ENST00000329451|LMNTD2	ENSG00000185522|ENST00000329451|LMNTD2	MULTI-MSMS	A375_MHC_IP_R1	1	501.6903381347656	2	501.290548	1000.56654	-0.40326	-0.00020215	0.18894	9.4712E-05	-0.21433	-0.00010744	501.29047123884834	119.29	2.7395	119.29	117.51	120.25	0					122	53	4	0	0	0	0.77675	1	43846	43846		6.7232	0	1	119750000			30908	8673	22350	22516	30199	30199					0.06628261191792717
LKEQKERA	8	Unmodified	_LKEQKERA_					0	0	0		ENSG00000185522|ENST00000329451|LMNTD2	ENSG00000185522|ENST00000329451|LMNTD2	ENSG00000185522|ENST00000329451|LMNTD2	MULTI-MSMS	A375_MHC_IP_R1	1	501.690185546875	2	501.290548	1000.56654	-0.5669	-0.00028418	0.25162	0.00012613	-0.31528	-0.00015805	501.29057021389656	120.05	0.81009	120.05	119.84	120.65	0					28	15	2	0	0	0	0.77675	1	44404	44404		6.7232	0	1	71833000			30909	8673	22350	22516	30200	30200					0.06628261191792717
LKEQKERA	8	Unmodified	_LKEQKERA_					0	0	0		ENSG00000185522|ENST00000329451|LMNTD2	ENSG00000185522|ENST00000329451|LMNTD2	ENSG00000185522|ENST00000329451|LMNTD2	MULTI-MSMS	A375_MHC_IP_R2	2	501.68963623046875	2	501.290548	1000.56654	-0.51046	-0.00025589	0.30508	0.00015293	-0.20538	-0.00010296	501.2904667214218	117.97	3.6012	118.58	117.12	120.73	0.60909					213	70	5	0	0	0	0.77675	1	44997	44997		6.7232	0	1	168710000			30910	8673	22350	22516	30201	30201					0.06628261191792717
LKEQKERA	8	Unmodified	_LKEQKERA_					0	0	0		ENSG00000185522|ENST00000329451|LMNTD2	ENSG00000185522|ENST00000329451|LMNTD2	ENSG00000185522|ENST00000329451|LMNTD2	MULTI-MSMS	A375_MHC_IP_R2	2	501.6900329589844	2	501.290548	1000.56654	-0.57483	-0.00028816	-0.16118	-8.0799E-05	-0.73601	-0.00036896	501.2903817384042	120.3	2.329	120.83	119.84	122.17	0.5321					88	45	3	0	0	0	0.77675	1	45834	45834		6.7232	0	1	77391000			30911	8673	22350	22516	30202	30202					0.06628261191792717
LKEQLPLVR	9	Unmodified	_LKEQLPLVR_					0	0	0			REV__ENSG00000167208|ENST00000330943|SNX20	REV__ENSG00000167208|ENST00000330943|SNX20	MULTI-MSMS	A375_MHC_IP_R1	1	548.39501953125	2	548.347866	1094.68118	-0.8941	-0.00049028	0.3214	0.00017624	-0.5727	-0.00031404	548.3480077884558	149.63	2.5729	149.63	147.43	150	0					252	106	4	0	0	0	0.77595	1	56761	56761		0.45834	0	1	1838400	+		30912	20741	22351	22517	30203	30203					0.13762570673748087
LKERDFEIK	9	Unmodified	_LKERDFEIK_					0	0	0		ENSG00000244607|ENST00000310232|CCDC13;ENST00000435327.2_1_3:42791351-42799837:-|nuORF;ENST00000492806.5_1_3:42788640-42799837:-|nuORF	ENSG00000244607|ENST00000310232|CCDC13	ENSG00000244607|ENST00000310232|CCDC13	MULTI-MSMS	A375_MHC_IP_R1	1	393.6240234375	3	393.224034	1176.65027	-0.17882	-7.0315E-05	0.1001	3.9361E-05	-0.078717	-3.0953E-05	393.22402754701926	25.91	0.45583	25.91	25.714	26.17	0					14	8	2	0	0	0	0.25114	1	7673	7673		34.222	5.7272	1	4381300			30913	9823	22352	22518	30204	30204					0.0690137256883645
LKERIENL	8	Unmodified	_LKERIENL_					0	0	0			REV__tr|U7SLA7|U7SLA7_FUSNUHMAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02034PE=4SV=1	REV__tr|U7SLA7|U7SLA7_FUSNUHMAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02034PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	508.2004699707031	2	507.800749	1013.58694	-0.37929	-0.0001926	0.22716	0.00011535	-0.15213	-7.7252E-05	507.8005331632257	31.622	1.0198	31.622	31.262	32.282	0					32	19	2	0	0	0	0.86263	1	10139	10139		14.838	0	1	2741700	+		30914	28267	22353	22519	30205	30205					0.08069431851606623
LKERNKFLARE	11	Unmodified	_LKERNKFLARE_					0	0	0		ENST00000474051.1_1_14:68352547-68354002:+|nuORF;ENST00000497460.5_1_14:68353747-69006933:+|nuORF;ENST00000553595.5_1_14:68331761-69149671:+|nuORF;nc|ENSG00000182185|O15315-5|RAD51B;nc|ENSG00000182185|O15315-1|RAD51B;ENSG00000182185|ENST00000471583|RAD51B;nc|ENSG00000182185|O15315-4|RAD51B;nc|ENSG00000182185|O15315|RAD51B	ENST00000474051.1_1_14:68352547-68354002:+|nuORF	ENST00000474051.1_1_14:68352547-68354002:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	702.8388061523438	2	702.409518	1402.80448	-0.9616	-0.00067544	-0.1377	-9.6724E-05	-1.0993	-0.00077216	702.4087938490987	149.18	1.9701	149.18	147.9	149.87	0					141	51	4	0	0	0	0.73672	3	56934	56711;56736;56934		2.4985	1.3051	1	924770			30915	8385	22354	22520	30206;30207;30208	30208					0.11919202054241396
LKERNKFLARE	11	Unmodified	_LKERNKFLARE_					0	0	0		ENST00000474051.1_1_14:68352547-68354002:+|nuORF;ENST00000497460.5_1_14:68353747-69006933:+|nuORF;ENST00000553595.5_1_14:68331761-69149671:+|nuORF;nc|ENSG00000182185|O15315-5|RAD51B;nc|ENSG00000182185|O15315-1|RAD51B;ENSG00000182185|ENST00000471583|RAD51B;nc|ENSG00000182185|O15315-4|RAD51B;nc|ENSG00000182185|O15315|RAD51B	ENST00000474051.1_1_14:68352547-68354002:+|nuORF	ENST00000474051.1_1_14:68352547-68354002:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	702.8079833984375	2	702.409518	1402.80448	-0.52491	-0.0003687	-0.974	-0.00068415	-1.4989	-0.0010528	702.4083925463729	149.28	1.9592	149.3	147.95	149.91	0.018265					184	63	4	0	0	0	0.73672	3	57877	57696;57877;57887		2.4985	1.3051	1	931540			30916	8385	22354	22520	30209;30210;30211	30210					0.11919202054241396
LKERSRRQKR	10	Unmodified	_LKERSRRQKR_					0	0	0			REV__nc|ENSG00000165810|Q6UXG8-2|BTNL9	REV__nc|ENSG00000165810|Q6UXG8-2|BTNL9	MULTI-MSMS	A375_MHC_IP_R2	2	453.682861328125	3	452.948009	1355.8222	-0.063538	-2.8779E-05	0.83967	0.00038033	0.77614	0.00035155	452.9483056881107	137.08	1.4828	137.19	136.81	138.29	0.11134					62	28	4	0	0	0	0.72607	1	53813	53813		0.62683	0.62683	1	15371000	+		30917	20625	22355	22521	30212	30212					0.15851962099714
LKERSRRQKR	10	Unmodified	_LKERSRRQKR_					0	0	0			REV__nc|ENSG00000165810|Q6UXG8-2|BTNL9	REV__nc|ENSG00000165810|Q6UXG8-2|BTNL9	MULTI-MSMS	A375_MHC_IP_R2	2	679.3189086914062	2	678.918375	1355.8222	-0.46395	-0.00031498	0.84571	0.00057417	0.38176	0.00025919	678.9188949870553	137.08	0.46255	137.19	137.02	137.48	0.11134					19	8	3	0	0	0	0.72607	1	53823	53823		1.4819	0.15237	1	4866300	+		30918	20625	22355	22521	30213	30213					0.15851962099714
LKERSRRQKR	10	Unmodified	_LKERSRRQKR_					0	0	0			REV__nc|ENSG00000165810|Q6UXG8-2|BTNL9	REV__nc|ENSG00000165810|Q6UXG8-2|BTNL9	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	678.918375	1355.8222	-0.93885	-0.00063741	1.6073	0.0010913	0.66849	0.00045385	678.9192687654697	137.1	0.56615	137.1	136.97	137.54	0	-0.04369	0.00028913	NaN	1.4819	22	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5849000	+		30919	20625	22355	22521							0.15851962099714
LKERSRRQKR	10	Unmodified	_LKERSRRQKR_					0	0	0			REV__nc|ENSG00000165810|Q6UXG8-2|BTNL9	REV__nc|ENSG00000165810|Q6UXG8-2|BTNL9	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	452.948009	1355.8222	-0.50999	-0.000231	1.346	0.00060966	0.836	0.00037866	452.94851653239954	137.1	1.3854	137.1	136.87	138.25	0	-0.046189	0.00027764	NaN	0.62683	54	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16453000	+		30920	20625	22355	22521							0.15851962099714
LKERSRRQKR	10	Unmodified	_LKERSRRQKR_					0	0	0			REV__nc|ENSG00000165810|Q6UXG8-2|BTNL9	REV__nc|ENSG00000165810|Q6UXG8-2|BTNL9	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	678.918375	1355.8222	-0.46395	-0.00031498	0.84571	0.00057417	0.38176	0.00025919	678.9188949870553	137.08	0.46255	137.19	137.02	137.48	0.11134	0.04369	-0.00074504	NaN	1.4819	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4866300	+		30921	20625	22355	22521							0.15851962099714
LKERTGFQL	9	Unmodified	_LKERTGFQL_					0	0	0		ENSG00000180176|ENST00000352909|TH;nc|ENSG00000180176|P07101-4|TH;nc|ENSG00000180176|P07101-2|TH;nc|ENSG00000180176|P07101|TH	ENSG00000180176|ENST00000352909|TH	ENSG00000180176|ENST00000352909|TH	MULTI-MSMS	A375_MHC_IP_R2	2	364.60137939453125	3	364.545108	1090.61349	-0.8614	-0.00031402	-0.23011	-8.3885E-05	-1.0915	-0.00039791	364.54554362362444	29.099	0.5541	29.798	29.681	30.236	0.69872					16	10	2	0	0	0	0.60101	1	10132	10132		14.405	0	1	3904400			30922	8279	22356	22522	30214	30214					0.07181120742961866
LKESVETAKSK	11	Unmodified	_LKESVETAKSK_					0	0	0			REV__ENSG00000197653|ENST00000673944|DNAH10	REV__ENSG00000197653|ENST00000673944|DNAH10	MULTI-MSMS	A375_MHC_IP_R2	2	610.7470703125	2	610.34826	1218.68197	-0.48051	-0.00029328	-0.37109	-0.0002265	-0.85161	-0.00051978	610.3478657767532	130.77	0.91672	130.98	130.75	131.67	0.2142					30	17	2	0	0	0	0.73672	1	51412	51412		2.4985	2.4985	1	48477000	+		30923	22307	22357	22523	30215	30215					0.08137320532114245
LKETNDEW	8	Unmodified	_LKETNDEW_					0	0	0			REV__ENSG00000111875|ENST00000229595|ASF1A	REV__ENSG00000111875|ENST00000229595|ASF1A	MULTI-MSMS	A375_MHC_IP_R1	1	1034.0018310546875	1	1034.47892	1033.47164	0.19302	0.00019968	-0.66213	-0.00068496	-0.46911	-0.00048529	1034.4783440537092	73.158	0.55672	73.158	72.83	73.386	0					16	10	2	0	0	0	0.77741	1	26620	26620		4.3292	0	1	2914600	+		30924	17702	22358	22524	30216	30216					-0.04375717070047358
LKETNDEW	8	Unmodified	_LKETNDEW_					0	0	0			REV__ENSG00000111875|ENST00000229595|ASF1A	REV__ENSG00000111875|ENST00000229595|ASF1A	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	1034.47892	1033.47164	0.19302	0.00019968	-0.66213	-0.00068496	-0.46911	-0.00048529	1034.4783440537092	73.158	0.55672	73.158	72.83	73.386	0	-0.029704	-2.3959E-05	NaN	4.3292	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2914600	+		30925	17702	22358	22524							-0.04375717070047358
LKETNDEW	8	Unmodified	_LKETNDEW_					0	0	0			REV__ENSG00000111875|ENST00000229595|ASF1A	REV__ENSG00000111875|ENST00000229595|ASF1A	MULTI-MATCH	A375_MHC_IP_R2	2		1	1034.47892	1033.47164	-0.1016	-0.0001051	-0.6002	-0.0006209	-0.7018	-0.000726	1034.4784452019696	72.482	0.50671	73.217	72.872	73.379	0.73541	0.029704	4.0107E-05	NaN	4.3292	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2211300	+		30926	17702	22358	22524							-0.04375717070047358
LKEVLKDF	8	Unmodified	_LKEVLKDF_					0	0	0		tr|U7SEE9|U7SEE9_FUSNU2',3'-cyclic-nucleotide3'-phosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02343PE=4SV=1	tr|U7SEE9|U7SEE9_FUSNU2',3'-cyclic-nucleotide3'-phosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02343PE=4SV=1	tr|U7SEE9|U7SEE9_FUSNU2',3'-cyclic-nucleotide3'-phosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02343PE=4SV=1	MSMS	A375_MHC_IP_R2	2	496.3587341308594	2	496.294768	990.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.55	1	141.59	141.09	142.09	0.04216								0	0	0	0.16876	1	55362	55362		2.0598	0	1				30927	29383	22359	22525	30217	30217					0.0793181510841805
LKEWTSKLWH	10	Unmodified	_LKEWTSKLWH_					0	0	0		ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	MSMS	A375_MHC_IP_R1	1	664.2962646484375	2	664.361505	1326.70846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.05	1	131.05	130.55	131.55	0								0	0	0	0.15531	1	50524	50524		3.5965	0	1				30928	1333	22360	22526	30218	30218					0.05817054214116979
LKFERFPKE	9	Unmodified	_LKFERFPKE_					0	0	0			REV__ENST00000555284.1_1_14:81736911-81745120:-|nuORF	REV__ENST00000555284.1_1_14:81736911-81745120:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	398.96063232421875	3	398.560758	1192.66044	-0.13138	-5.2362E-05	0.13042	5.1979E-05	-0.00096287	-3.8376E-07	398.56069490593546	32.67	0.45779	33.407	33.213	33.671	0.73692					25	8	4	0	0	0	0.41856	1	11668	11668		23.801	0	1	10548000	+		30929	26096	22361	22527	30219	30219					0.07181980294103596
LKFERFPKE	9	Unmodified	_LKFERFPKE_					0	0	0			REV__ENST00000555284.1_1_14:81736911-81745120:-|nuORF	REV__ENST00000555284.1_1_14:81736911-81745120:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	398.560758	1192.66044	-0.11757	-4.686E-05	0.32141	0.0001281	0.20384	8.1243E-05	398.56081742742583	33.668	0.50507	33.668	33.393	33.898	0	0.13036	8.7917E-05	NaN	23.801	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10800000	+		30930	26096	22361	22527							0.07181980294103596
LKFHYHTLWLY	11	Unmodified	_LKFHYHTLWLY_					0	0	0		RYR2|p.R1659W|1|0.3|ENSG00000198626|chr1:237614103-237614103|C/T|missense_variant	RYR2|p.R1659W|1|0.3|ENSG00000198626|chr1:237614103-237614103|C/T|missense_variant	RYR2|p.R1659W|1|0.3|ENSG00000198626|chr1:237614103-237614103|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	508.00665283203125	3	507.606478	1519.79761	-0.4208	-0.0002136	1.1109	0.00056388	0.69007	0.00035028	507.6070205786405	43.884	0.35516	43.884	43.706	44.061	0					11	6	2	0	0	0	1.001	1	15266	15266		1.4551	0.12547	1	7920200			30931	29103	22362	22528	30220	30220					0.058498891736689984
LKFIPRKPV	9	Unmodified	_LKFIPRKPV_					0	0	0		NFU1|p.G77R|1|0.3|ENSG00000169599|chr2:69423655-69423655|C/T|missense_variant	NFU1|p.G77R|1|0.3|ENSG00000169599|chr2:69423655-69423655|C/T|missense_variant	NFU1|p.G77R|1|0.3|ENSG00000169599|chr2:69423655-69423655|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	366.6448974609375	3	366.577972	1096.71209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.948	1	39.948	39.448	40.448	0								0	0	0	0.15486	1	13696	13696		7.609	0	1				30932	14992	22363	22529	30221	30221					0.16759768778638318
LKFIRKMTS	9	Unmodified	_LKFIRKMTS_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	374.96038818359375	3	375.226722	1122.65834	-0.088104	-3.3059E-05	1.7378	0.00065207	1.6497	0.00061901	375.227299169878	24.806	0.20144	25.449	25.314	25.516	0.64368					6	3	2	0	0	0	0.75519	1	8212	8212		6.6304	3.5581	1	2330600			30933	1303	22364	22530	30222	30222					0.10191228284634235
LKFKKKRTS	9	Unmodified	_LKFKKKRTS_					0	0	0		tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1	tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1	tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1	MSMS	A375_MHC_IP_R2	2	379.6143798828125	3	379.248514	1134.72371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.95	1	141.98	141.48	142.48	0.030731								0	0	0	0.15486	1	55503	55503		0.23584	0.076522	1				30934	29542	22365	22531	30223	30223					0.1617396580197692
LKFLNLDKY	9	Unmodified	_LKFLNLDKY_					0	0	0			REV__nc|ENSG00000032219|P29374-3|ARID4A	REV__nc|ENSG00000032219|P29374-3|ARID4A	MSMS	A375_MHC_IP_R2	2	385.2608642578125	3	385.225375	1152.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.071	1	25.714	25.214	26.214	0.64368								0	0	0	0.15486	1	8331	8331		9.544	3.3382	1		+		30935	15445	22366	22532	30224	30224					0.08407462062541526
LKFLRRKPIIY	11	Unmodified	_LKFLRRKPIIY_					0	0	0			REV__ENST00000608684.1_1_1:78470094-78470214:-|nuORF	REV__ENST00000608684.1_1_1:78470094-78470214:-|nuORF	MSMS	A375_MHC_IP_R1	1	724.2999877929688	2	723.969014	1445.92348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.26	1	97.26	96.76	97.76	0								0	0	0	0.16353	1	35735	35735		0.35063	0	1		+		30936	26562	22367	22533	30225	30225					0.21835020749767864
LKFWRTRFLLL	11	Unmodified	_LKFWRTRFLLL_					0	0	0		nc|ENSG00000100150|O75140-8|DEPDC5;nc|ENSG00000100150|O75140-5|DEPDC5;nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5;nc|ENSG00000100150|O75140-6|DEPDC5	nc|ENSG00000100150|O75140-8|DEPDC5	nc|ENSG00000100150|O75140-8|DEPDC5	MULTI-MSMS	A375_MHC_IP_R1	1	498.7094421386719	3	498.309885	1491.90782	-0.64217	-0.00032	0.41772	0.00020815	-0.22445	-0.00011184	498.3098916731759	133.52	1.0183	133.52	133.1	134.12	0					42	19	4	0	0	0	0.73881	1	51455	51455		0.50596	0.051438	1	7841600			30937	2126	22368	22534	30226	30226					0.18154734232712144
LKFWRTRFLLL	11	Unmodified	_LKFWRTRFLLL_					0	0	0		nc|ENSG00000100150|O75140-8|DEPDC5;nc|ENSG00000100150|O75140-5|DEPDC5;nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5;nc|ENSG00000100150|O75140-6|DEPDC5	nc|ENSG00000100150|O75140-8|DEPDC5	nc|ENSG00000100150|O75140-8|DEPDC5	MULTI-MSMS	A375_MHC_IP_R2	2	498.709716796875	3	498.309885	1491.90782	-0.44418	-0.00022134	-0.18174	-9.0561E-05	-0.62591	-0.0003119	498.3094859614991	133.53	1.1152	133.7	133.04	134.16	0.16489					46	21	3	0	0	0	0.73881	1	52437	52437		0.50596	0.41111	1	4586700			30938	2126	22368	22534	30227	30227					0.18154734232712144
LKFWRTRFLLL	11	Unmodified	_LKFWRTRFLLL_					0	0	0		nc|ENSG00000100150|O75140-8|DEPDC5;nc|ENSG00000100150|O75140-5|DEPDC5;nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5;nc|ENSG00000100150|O75140-6|DEPDC5	nc|ENSG00000100150|O75140-8|DEPDC5	nc|ENSG00000100150|O75140-8|DEPDC5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	498.309885	1491.90782	-0.64217	-0.00032	0.41772	0.00020815	-0.22445	-0.00011184	498.3098916731759	133.52	1.0183	133.52	133.1	134.12	0	-0.090502	0.00032018	NaN	0.50596	42	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7841600			30939	2126	22368	22534							0.18154734232712144
LKGEKKLYK	9	Unmodified	_LKGEKKLYK_					0	0	0			REV__tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	REV__tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	369.9302673339844	3	369.569253	1105.68593	0.48767	0.00018023	-0.16055	-5.9334E-05	0.32712	0.0001209	369.5691648757073	22.95	0.4015	22.95	22.723	23.125	0					14	7	2	0	0	0	0.70411	1	6270	6270		6.6304	0	1	2407100	+		30940	28474	22369	22535	30228	30228					0.13731454816502264
LKGFRVILE	9	Unmodified	_LKGFRVILE_					0	0	0		ENST00000469841.5_1_3:57131519-57204269:-|nuORF;nc|ENSG00000144730|Q8NFM7-4|IL17RD;nc|ENSG00000144730|Q8NFM7-3|IL17RD;ENSG00000144730|ENST00000296318|IL17RD	ENST00000469841.5_1_3:57131519-57204269:-|nuORF	ENST00000469841.5_1_3:57131519-57204269:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	358.94482421875	3	358.893848	1073.65972	0.23612	8.4741E-05	-0.69273	-0.00024862	-0.45661	-0.00016388	358.8935172174746	35.395	0.15186	35.395	35.269	35.421	0					4	2	2	0	0	0	0.66474	1	11774	11774		10.151	3.0488	1	438250			30941	5510	22370	22536	30229	30229					0.12583185645053163
LKGKARGH	8	Unmodified	_LKGKARGH_					0	0	0		ENSG00000215251|ENST00000380266|FASTKD5	ENSG00000215251|ENST00000380266|FASTKD5	ENSG00000215251|ENST00000380266|FASTKD5	MULTI-SECPEP	A375_MHC_IP_R1	1	434.1695251464844	2	433.769586	865.524619	-0.52305	-0.00022689	1.0466	0.00045399	0.52357	0.00022711	433.76965786674776	142.66	0.30461	142.66	142.49	142.79	0					7	5	2	0	0	0	0.972	1	54748	54748		0	0	1	2314200			30942	9641	22371	22537	30230	30230					0.08647750293937406
LKGPDSQHFS	10	Unmodified	_LKGPDSQHFS_					0	0	0		ENST00000495250.2_1_22:45121127-45205177:+|nuORF	ENST00000495250.2_1_22:45121127-45205177:+|nuORF	ENST00000495250.2_1_22:45121127-45205177:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	558.63232421875	2	558.277638	1114.54072	-0.13662	-7.6269E-05	-0.63736	-0.00035583	-0.77398	-0.0004321	558.2771173691086	22.48	0.56051	22.48	22.113	22.673	0					13	10	2	0	0	0	0.91909	1	6091	6091		13.906	1.3745	1	1390700			30943	12701	22372	22538	30231	30231					-0.01196633050494711
LKGQGGAR	8	Unmodified	_LKGQGGAR_					0	0	0			REV__FLNB|p.G970R|1|0.22|ENSG00000136068|chr3:58121285-58121285|G/A|missense_variant	REV__FLNB|p.G970R|1|0.22|ENSG00000136068|chr3:58121285-58121285|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	394.1317443847656	2	393.732669	785.450785	0.47422	0.00018672	-2.5269	-0.00099491	-2.0526	-0.0008082	393.7317455633787	38.95	0.30467	38.95	38.832	39.136	0					6	5	2	0	0	0	0.972	1	13305	13305		4.756	0	1	1894100	+		30944	26636	22373	22539	30232	30232					0.04947782131603162
LKGRLPRPQ	9	Unmodified	_LKGRLPRPQ_					0	0	0			REV__ENST00000341011.11_1_17:41448764-41458699:-|nuORF	REV__ENST00000341011.11_1_17:41448764-41458699:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	354.97186279296875	3	355.561092	1063.66145	-0.067803	-2.4108E-05	0.18033	6.412E-05	0.11253	4.0012E-05	355.5611921286839	34.305	0.70774	34.305	34.052	34.759	0					19	13	2	0	0	0	0.81275	1	11423	11423		0.20686	0	1	1878900	+		30945	23727	22374	22540	30233	30233					0.1321623945364081
LKGSKKLSRI	10	Unmodified	_LKGSKKLSRI_					0	0	0			REV__nc|ENSG00000134824|O95864-4|FADS2	REV__nc|ENSG00000134824|O95864-4|FADS2	MULTI-MSMS	A375_MHC_IP_R2	2	565.7742919921875	2	565.374415	1128.73428	-0.25623	-0.00014487	-0.47926	-0.00027096	-0.73549	-0.00041582	565.3739493623976	149.57	1.6195	149.58	148.39	150.01	0.018265					151	60	3	0	0	0	0.72669	1	58096	58096		0.35063	0	1	422770	+		30946	18805	22375	22541	30234	30234					0.17505948456414444
LKHAKQVL	8	Unmodified	_LKHAKQVL_					0	0	0			REV__NDN|p.E104K|1|0.41|ENSG00000182636|chr15:23686908-23686908|C/T|missense_variant	REV__NDN|p.E104K|1|0.41|ENSG00000182636|chr15:23686908-23686908|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	469.2027587890625	2	468.803094	935.591636	-0.93582	-0.00043872	0.23724	0.00011122	-0.69858	-0.0003275	468.8031814613566	60.214	0.91508	60.96	60.652	61.567	0.7459					56	17	5	0	0	0	0.77624	1	22969	22969		8.5933	1.304	1	128290000	+		30947	27584	22376	22542	30235	30235					0.12126360785032375
LKHIFHVRS	9	Unmodified	_LKHIFHVRS_					0	0	0		ENSG00000125485|ENST00000372159|DDX31;nc|ENSG00000125485|Q9H8H2|DDX31;nc|ENSG00000125485|Q9H8H2-2|DDX31	ENSG00000125485|ENST00000372159|DDX31	ENSG00000125485|ENST00000372159|DDX31	MSMS	A375_MHC_IP_R2	2	379.6242980957031	3	379.561092	1135.66145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.105	1	23.735	23.235	24.235	0.63014								0	0	0	0.15386	1	7388	7388		15.248	1.6336	1				30948	3969	22377	22543	30236	30236					0.09904239453658192
LKHKSHKT	8	Unmodified	_LKHKSHKT_					0	0	0		L1PB1_dup12829|chr21:46585548-46587567:+|1.182533549073013|0.3950341382787979|1.58|465.0|46|2|sense	L1PB1_dup12829|chr21:46585548-46587567:+|1.182533549073013|0.3950341382787979|1.58|465.0|46|2|sense	L1PB1_dup12829|chr21:46585548-46587567:+|1.182533549073013|0.3950341382787979|1.58|465.0|46|2|sense	MSMS	A375_MHC_IP_R1	1	489.67962646484375	2	489.795801	977.577048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.72	1	142.72	142.22	143.22	0								0	0	0	0.16876	1	54761	54761		2.3027	0	1				30949	14272	22378	22544	30237	30237					0.08736288636896461
LKHLKLKKLK	10	Unmodified	_LKHLKLKKLK_					0	0	0		ENST00000498819.1_1_9:91963122-91972225:+|nuORF;nc|ENSG00000187742|Q96T21-2|SECISBP2;nc|ENSG00000187742|Q96T21-3|SECISBP2;ENSG00000187742|ENST00000375807|SECISBP2	ENST00000498819.1_1_9:91963122-91972225:+|nuORF	ENST00000498819.1_1_9:91963122-91972225:+|nuORF	MSMS	A375_MHC_IP_R1	1	624.852294921875	2	624.94755	1247.88055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.882	1	81.882	81.382	82.382	0								0	0	0	0.15642	1	29930	29930		0	0	1				30950	8854	22379	22545	30238	30238					0.2665225069231383
LKHSIDNGQV	10	Unmodified	_LKHSIDNGQV_					0	0	0			REV__nc|ENSG00000170419|Q8TAG5|VSTM2A	REV__nc|ENSG00000170419|Q8TAG5|VSTM2A	MSMS	A375_MHC_IP_R1	1	370.9244079589844	3	370.86825	1109.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.258	1	23.258	22.758	23.758	0								0	0	0	0.15341	1	6355	6355		9.7643	2.2872	1		+		30951	20990	22380	22546	30239	30239					0.03251342357884823
LKHSIDNGQV	10	Unmodified	_LKHSIDNGQV_					0	0	0			REV__nc|ENSG00000170419|Q8TAG5|VSTM2A	REV__nc|ENSG00000170419|Q8TAG5|VSTM2A	MSMS	A375_MHC_IP_R2	2	370.92431640625	3	370.86825	1109.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.823	1	23.453	22.953	23.953	0.63014								0	0	0	0.15225	1	7272	7272		13.519	2.7192	1		+		30952	20990	22380	22546	30240	30240					0.03251342357884823
LKHSKRLQY	9	Unmodified	_LKHSKRLQY_					0	0	0			REV__ENST00000370473.4_1_1:89518729-89518843:-|nuORF	REV__ENST00000370473.4_1_1:89518729-89518843:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	392.2922668457031	3	391.568135	1171.68258	-0.3625	-0.00014194	-1.4775	-0.00057855	-1.84	-0.0007205	391.5676412340657	37.75	0.51318	38.524	38.382	38.895	0.77451					13	9	2	0	0	0	0.77948	1	13922	13922		6.6304	0	1	1578600	+		30953	24030	22381	22547	30241	30241					0.10360204762514513
LKIALALSDL	10	Unmodified	_LKIALALSDL_					0	0	0		nc|ENSG00000139151|Q86YW0-2|PLCZ1;nc|ENSG00000139151|Q86YW0-3|PLCZ1;ENSG00000139151|ENST00000266505|PLCZ1	nc|ENSG00000139151|Q86YW0-2|PLCZ1	nc|ENSG00000139151|Q86YW0-2|PLCZ1	MULTI-SECPEP	A375_MHC_IP_R1	1	529.2362060546875	2	528.8368	1055.65905	-0.57597	-0.00030459	-0.15498	-8.1959E-05	-0.73095	-0.00038655	528.8366572598973	60.998	0.4569	60.998	60.77	61.227	0					18	8	3	0	0	0	0.73104	1	21979	21979		19.362	0	1	4668600			30954	5052	22382	22548	30242	30242					0.13344346205326474
LKIDSLTKV	9	Unmodified	_LKIDSLTKV_					0	0	0			REV__nc|ENSG00000254685|O14772-2|FPGT	REV__nc|ENSG00000254685|O14772-2|FPGT	MULTI-SECPEP	A375_MHC_IP_R1	1	509.22100830078125	2	508.82115	1015.62775	-0.81655	-0.00041548	0.47683	0.00024262	-0.33972	-0.00017286	508.8213598337137	41.445	0.35633	41.445	41.215	41.571	0					10	6	2	0	0	0	0.46045	1	14340	14340		36.127	3.8215	1	2400700	+		30955	22866	22383	22549	30243	30243					0.12055773171221063
LKIDSLTKV	9	Unmodified	_LKIDSLTKV_					0	0	0			REV__nc|ENSG00000254685|O14772-2|FPGT	REV__nc|ENSG00000254685|O14772-2|FPGT	MULTI-MATCH	A375_MHC_IP_R2	2		2	508.82115	1015.62775	-0.81825	-0.00041634	-0.025813	-1.3134E-05	-0.84406	-0.00042948	508.8210793977861	40.42	0.30364	41.195	41.031	41.335	0.77451	-0.12498	-0.00027277	NaN	34.402	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2230800	+		30956	22866	22383	22549							0.12055773171221063
LKIHFVPPF	9	Unmodified	_LKIHFVPPF_					0	0	0			REV__nc|ENSG00000072195|Q15772-1|SPEG	REV__nc|ENSG00000072195|Q15772-1|SPEG	MULTI-SECPEP	A375_MHC_IP_R1	1	366.9549865722656	3	366.555055	1096.64334	0.39312	0.0001441	-0.16273	-5.9648E-05	0.2304	8.4453E-05	366.5549432725771	50.004	0.51198	50.004	49.692	50.204	0					20	9	3	0	0	0	0.77003	1	17700	17700		7.609	0	1	3119500	+		30957	16601	22384	22550	30244	30244					0.09888104478932291
LKIIIIPIIKA	11	Unmodified	_LKIIIIPIIKA_					0	0	0		ENST00000377142.4_1_20:21494349-21494634:-|nuORF	ENST00000377142.4_1_20:21494349-21494634:-|nuORF	ENST00000377142.4_1_20:21494349-21494634:-|nuORF	MSMS	A375_MHC_IP_R1	1	617.8318481445312	2	617.946685	1233.87882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.292	1	86.292	85.792	86.792	0								0	0	0	0.1636	1	31637	31637		0	0	1				30958	11292	22385	22551	30245	30245					0.2712319688371281
LKIIIIPIIKA	11	Unmodified	_LKIIIIPIIKA_					0	0	0		ENST00000377142.4_1_20:21494349-21494634:-|nuORF	ENST00000377142.4_1_20:21494349-21494634:-|nuORF	ENST00000377142.4_1_20:21494349-21494634:-|nuORF	MSMS	A375_MHC_IP_R2	2	617.7201538085938	2	617.946685	1233.87882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.29	1	115	114.5	115.5	0.70985								0	0	0	0.1636	1	43096	43096		0	0	1				30959	11292	22385	22551	30246	30246					0.2712319688371281
LKIIKKVKNK	10	Unmodified	_LKIIKKVKNK_					0	0	0			REV__nc|ENSG00000248905|Q68DA7-5|FMN1;REV__ENSG00000248905|ENST00000616417|FMN1	REV__nc|ENSG00000248905|Q68DA7-5|FMN1	MSMS	A375_MHC_IP_R2	2	606.5126953125	2	606.431733	1210.84891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.6	1	116.29	115.79	116.79	0.68999								0	0	0	0.15596	1	43578	43578		1.4819	0.95714	1		+		30960	27527;15710	22386	22552	30247	30247					0.2519225793835176
LKIILHFLISI	11	Unmodified	_LKIILHFLISI_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MSMS	A375_MHC_IP_R1	1	655.4302368164062	2	655.433941	1308.85333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.775	1	86.775	86.275	87.275	0								0	0	0	0.16302	1	31827	31827		2.9952	1.6657	1				30961	1612	22387	22553	30248	30248					0.21125722361261978
LKIILHFLISI	11	Unmodified	_LKIILHFLISI_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MSMS	A375_MHC_IP_R2	2	655.5308227539062	2	655.433941	1308.85333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.78	1	82.523	82.023	83.023	0.74293								0	0	0	0.16249	1	31064	31064		5.7319	0.43497	1				30962	1612	22387	22553	30249	30249					0.21125722361261978
LKIILHFLISI	11	Unmodified	_LKIILHFLISI_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MSMS	A375_MHC_IP_R2	2	655.8675537109375	2	655.433941	1308.85333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.308	1	84.048	83.548	84.548	0.73962								0	0	0	0.16302	1	31664	31664		2.9952	1.6657	1				30963	1612	22387	22553	30250	30250					0.21125722361261978
LKIKGWRKIY	10	Unmodified	_LKIKGWRKIY_					0	0	0		nc|ENSG999|O00370|L1_ORF2	nc|ENSG999|O00370|L1_ORF2	nc|ENSG999|O00370|L1_ORF2	MSMS	A375_MHC_IP_R2	2	652.9956665039062	2	652.913707	1303.81286	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.668	1	95.413	94.913	95.913	0.74474								0	0	0	0.15628	1	35972	35972		0.45834	0	1				30964	14975	22388	22554	30251	30251					0.17310800761515566
LKIKGWRKIY	10	Unmodified	_LKIKGWRKIY_					0	0	0		nc|ENSG999|O00370|L1_ORF2	nc|ENSG999|O00370|L1_ORF2	nc|ENSG999|O00370|L1_ORF2	MSMS	A375_MHC_IP_R2	2	652.9960327148438	2	652.913707	1303.81286	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.2	1	105.97	105.47	106.47	0.76308								0	0	0	0.15585	1	39795	39795		1.8442	0	1				30965	14975	22388	22554	30252	30252					0.17310800761515566
LKILKLLLLKR	11	Unmodified	_LKILKLLLLKR_					0	0	0		ENST00000349215.7_1_11:18339453-18343686:-|nuORF	ENST00000349215.7_1_11:18339453-18343686:-|nuORF	ENST00000349215.7_1_11:18339453-18343686:-|nuORF	MSMS	A375_MHC_IP_R2	2	676.1135864257812	2	675.999783	1349.98501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.23	1	109.98	109.48	110.48	0.74684								0	0	0	0.1636	1	41226	41226		0	0	1				30966	10919	22389	22555	30253	30253					0.32401952449004057
LKILLLHLLL	10	Unmodified	_LKILLLHLLL_					0	0	0			REV__ENST00000256442.9_1_5:68473515-68473575:+|nuORF	REV__ENST00000256442.9_1_5:68473515-68473575:+|nuORF	MSMS	A375_MHC_IP_R1	1	594.96533203125	2	594.925752	1187.83695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.679	1	89.679	89.179	90.179	0								0	0	0	0.15591	1	32946	32946		1.6526	0	1		+		30967	23150	22390	22556	30254	30254					0.2505464119519729
LKILTHGQS	9	Unmodified	_LKILTHGQS_					0	0	0			REV__nc|ENSG00000164744|Q8TAQ9-2|SUN3	REV__nc|ENSG00000164744|Q8TAQ9-2|SUN3	MULTI-SECPEP	A375_MHC_IP_R2	2	499.1952819824219	2	498.795466	995.57638	-0.60704	-0.00030279	0.16009	7.9852E-05	-0.44695	-0.00022293	498.7955142520077	27.037	0.71548	27.716	27.484	28.2	0.67857					37	13	4	0	0	0	0.46045	1	9183	9183		17.113	0	1	42836000	+		30968	20514	22391	22557	30255	30255					0.07841449197189831
LKKFLYCL	8	Unmodified	_LKKFLYCL_					0	0	0		LONRF2|p.E287K|2|0.21|ENSG00000170500|chr2:100302983-100302983|C/T|missense_variant	LONRF2|p.E287K|2|0.21|ENSG00000170500|chr2:100302983-100302983|C/T|missense_variant	LONRF2|p.E287K|2|0.21|ENSG00000170500|chr2:100302983-100302983|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	514.7035522460938	2	514.304081	1026.59361	-0.2696	-0.00013866	-0.48597	-0.00024994	-0.75557	-0.00038859	514.303818357309	21.377	0.30615	21.377	21.199	21.505	0					9	5	2	0	0	0	0.7779	1	5645	5645		2.5775	0	1	2136400			30969	14307	22392	22558	30256	30256					0.08137653478615903
LKKGKKVIF	9	Unmodified	_LKKGKKVIF_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MSMS	A375_MHC_IP_R2	2	354.26953125	3	354.246222	1059.71684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.664	1	42.439	41.939	42.939	0.77451								0	0	0	0.15486	1	15468	15468		4.897	2.1618	1				30970	7640	22393	22559	30257	30257					0.18936652921388486
LKKILRRRRKI	11	Unmodified	_LKKILRRRRKI_					0	0	0		ENST00000320876.10_2_18:2688638-2694582:+|nuORF	ENST00000320876.10_2_18:2688638-2694582:+|nuORF	ENST00000320876.10_2_18:2688638-2694582:+|nuORF	MSMS	A375_MHC_IP_R1	1	740.5232543945312	2	740.525353	1479.03615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.22	1	122.22	121.72	122.72	0								0	0	0	0.1636	1	45457	45457		0	0	1				30971	10693	22394	22560	30258	30258					0.31579714266422343
LKKKFTRL	8	Unmodified	_LKKKFTRL_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MSMS	A375_MHC_IP_R2	2	517.5591430664062	2	517.347669	1032.68079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.024	1	91.759	91.259	92.259	0.7345								0	0	0	0.16876	1	34635	34635		2.3027	0	1		+		30972	18581	22395	22561	30259	30259					0.16575195744530902
LKKKHKRRKRY	11	Unmodified	_LKKKHKRRKRY_					0	0	0		KIF17|p.E765K|1|0.46|ENSG00000117245|chr1:20682823-20682823|C/T|missense_variant	KIF17|p.E765K|1|0.46|ENSG00000117245|chr1:20682823-20682823|C/T|missense_variant	KIF17|p.E765K|1|0.46|ENSG00000117245|chr1:20682823-20682823|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	771.0056762695312	2	771.004785	1539.99502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.47	1	120	119.5	120.5	0.5321								0	0	0	0.1636	1	45511	45511		0	0	1				30973	14212	22396	22562	30260	30260					0.24661953226950573
LKKKIKLYKR	10	Unmodified	_LKKKIKLYKR_					0	0	0			REV__tr|U7SH90|U7SH90_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02202PE=4SV=1	REV__tr|U7SH90|U7SH90_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02202PE=4SV=1	MSMS	A375_MHC_IP_R1	1	659.6864624023438	2	659.458282	1316.90201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.22	1	145.22	144.72	145.72	0								0	0	0	0.15642	1	55675	55675		0	0	1		+		30974	28202	22397	22563	30261	30261					0.25623635720990023
LKKKIKLYKR	10	Unmodified	_LKKKIKLYKR_					0	0	0			REV__tr|U7SH90|U7SH90_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02202PE=4SV=1	REV__tr|U7SH90|U7SH90_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02202PE=4SV=1	MSMS	A375_MHC_IP_R2	2	659.4569702148438	2	659.458282	1316.90201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.26	1	120.79	120.29	121.29	0.5321								0	0	0	0.15642	1	45873	45873		0	0	1		+		30975	28202	22397	22563	30262	30262					0.25623635720990023
LKKKKVIVIPV	11	Unmodified	_LKKKKVIVIPV_					0	0	0		ENSG00000110799|ENST00000261405|VWF	ENSG00000110799|ENST00000261405|VWF	ENSG00000110799|ENST00000261405|VWF	MSMS	A375_MHC_IP_R1	1	632.8590087890625	2	632.957584	1263.90061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.91	1	113.91	113.41	114.41	0								0	0	0	0.1636	1	41762	41762		0	0	1				30976	2948	22398	22564	30263	30263					0.2792200163223697
LKKKLFKKF	9	Unmodified	_LKKKLFKKF_					0	0	0			REV__tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1	REV__tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1	MSMS	A375_MHC_IP_R1	1	590.4581909179688	2	590.402444	1178.79034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.672	1	96.672	96.172	97.172	0								0	0	0	0.15486	1	35525	35525		0.6015	0.14316	1		+		30977	28549	22399	22565	30264	30264					0.20809201363863394
LKKKRQLLLRI	11	Unmodified	_LKKKRQLLLRI_					0	0	0			REV__ENSG00000253710|ENST00000521508|ALG11	REV__ENSG00000253710|ENST00000521508|ALG11	MSMS	A375_MHC_IP_R2	2	705.0011596679688	2	704.995563	1407.97657	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.55	1	123.92	123.42	124.42	0.3766								0	0	0	0.16354	1	47508	47508		0.30703	0	1		+		30978	22857	22400	22566	30265	30265					0.2889039853241684
LKKKVIKFF	9	Unmodified	_LKKKVIKFF_					0	0	0		ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	576.6900634765625	2	575.88917	1149.76379	-0.3889	-0.00022396	1.712	0.00098591	1.3231	0.00076194	575.8916125646202	85.437	0.25246	85.437	85.261	85.513	0					6	4	2	0	0	0	0.8175	1	31333	31333		0.6015	0.6015	1	1291000			30979	13050	22401	22567	30266	30266					0.19489512472546267
LKKLDRRKKQ	10	Unmodified	_LKKLDRRKKQ_					0	0	0			REV__ENST00000392914.3_1_12:102517666-102545686:+|nuORF	REV__ENST00000392914.3_1_12:102517666-102545686:+|nuORF	MSMS	A375_MHC_IP_R2	2	657.003662109375	2	656.93042	1311.84629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.087	1	85.823	85.323	86.323	0.73601								0	0	0	0.15596	1	32347	32347		1.4819	0	1		+		30980	24283	22402	22568	30267	30267					0.20283802533390372
LKKLKIKKQVK	11	Unmodified	_LKKLKIKKQVK_					0	0	0		ENSG00000230873|ENST00000536551|STMND1	ENSG00000230873|ENST00000536551|STMND1	ENSG00000230873|ENST00000536551|STMND1	MSMS	A375_MHC_IP_R2	2	677.7927856445312	2	677.48704	1352.95953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.24	1	145.27	144.77	145.77	0.021408								0	0	0	0.1636	1	56712	56712		0	0	1				30981	9721	22403	22569	30268	30268					0.2971647792658132
LKKLKPVTGYL	11	Unmodified	_LKKLKPVTGYL_					0	0	0			REV__SLITRK3|p.E912K|1|0.27|ENSG00000121871|chr3:165188097-165188097|C/T|missense_variant	REV__SLITRK3|p.E912K|1|0.27|ENSG00000121871|chr3:165188097-165188097|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	630.679931640625	2	630.407924	1258.80129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.18	1	144.2	143.7	144.7	0.024414								0	0	0	0.16334	1	56325	56325		1.3295	0	1		+		30982	28011	22404	22570	30269	30269					0.1822455894750874
LKKLNHRELY	10	Unmodified	_LKKLNHRELY_					0	0	0		ENST00000377325.1_1_6:28056349-28056487:+|nuORF	ENST00000377325.1_1_6:28056349-28056487:+|nuORF	ENST00000377325.1_1_6:28056349-28056487:+|nuORF	MSMS	A375_MHC_IP_R1	1	657.2269897460938	2	657.388054	1312.76155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.92	1	143.92	143.42	144.42	0								0	0	0	0.15585	1	55204	55204		1.8442	0	1				30983	11295	22405	22571	30270	30270					0.11768431996824802
LKKLQEARERK	11	Unmodified	_LKKLQEARERK_					0	0	0		nc|ENSG00000166024|Q7Z5L2-3|R3HCC1L;nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L;ENSG00000166024|ENST00000298999|R3HCC1L;nc|ENSG00000166024|Q7Z5L2|R3HCC1L	nc|ENSG00000166024|Q7Z5L2-3|R3HCC1L	nc|ENSG00000166024|Q7Z5L2-3|R3HCC1L	MULTI-MSMS	A375_MHC_IP_R1	1	700.329833984375	2	699.930617	1397.84668	-0.96522	-0.00067559	0.47968	0.00033574	-0.48554	-0.00033985	699.9307612240314	149.16	2.45	149.16	147.55	150	0					281	94	5	0	0	0	0.73833	1	57147	57147		0.96228	0.56156	1	2976900			30984	7018	22406	22572	30271	30271					0.16367177462552718
LKKLQLSEFFD	11	Unmodified	_LKKLQLSEFFD_					0	0	0		nc|ENSG00000085788|O94830-2|DDHD2;ENSG00000085788|ENST00000397166|DDHD2	nc|ENSG00000085788|O94830-2|DDHD2	nc|ENSG00000085788|O94830-2|DDHD2	MSMS	A375_MHC_IP_R2	2	456.63031005859375	3	456.590494	1366.74965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.66	1	131.85	131.35	132.35	0.18953								0	0	0	0.16302	1	51790	51790		1.2148	0.10508	1				30985	1818	22407	22573	30272	30272					0.08094770462912493
LKKLVLRKLRR	11	Unmodified	_LKKLVLRKLRR_					0	0	0		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	MSMS	A375_MHC_IP_R1	1	712.0908813476562	2	712.009005	1422.00346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.23	1	114.23	113.73	114.73	0								0	0	0	0.16354	1	41878	41878		0.30703	0	1				30986	8691	22408	22574	30273	30273					0.3093350714357257
LKKLYKLLKK	10	Unmodified	_LKKLYKLLKK_					0	0	0			REV__ENSG00000011007|ENST00000613537|ELOA	REV__ENSG00000011007|ENST00000613537|ELOA	MSMS	A375_MHC_IP_R2	2	637.9871215820312	2	637.949759	1273.88496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.46	1	119.07	118.57	119.57	0.60909								0	0	0	0.15629	1	44971	44971		0.40072	0.093686	1		+		30987	16200	22409	22575	30274	30274					0.25897715115206665
LKKNCPHIVV	10	Unmodified	_LKKNCPHIVV_					0	0	0		nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENST00000482195.5_1_6:31499071-31508296:-|nuORF	nc|ENSG00000198563|Q13838-2|DDX39B;ENST00000482195.5_1_6:31499071-31508296:-|nuORF	nc|ENSG00000198563|Q13838-2|DDX39B	MULTI-MSMS	A375_MHC_IP_R2	2	576.2432250976562	2	575.841894	1149.66923	-0.16543	-9.526E-05	1.9302	0.0011115	1.7648	0.0010163	575.843194755315	124.34	0.50572	124.67	124.34	124.85	0.32969					12	9	2	0	0	0	0.7154	1	48112	48112		2.9952	0	1	17204000			30988	9284;12521	22410	22576	30275	30275					0.10038630658891634
LKKNEEVIAEY	11	Unmodified	_LKKNEEVIAEY_					0	0	0			REV__ENST00000465771.3_1_1:39330344-39338266:-|nuORF	REV__ENST00000465771.3_1_1:39330344-39338266:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	668.7614135742188	2	668.361367	1334.70818	-0.5908	-0.00039487	-0.44617	-0.0002982	-1.037	-0.00069307	668.3614139565868	59.451	0.45656	59.451	59.092	59.548	0					19	8	4	0	0	0	0.68694	1	21371	21371		16.566	2.951	1	2527300	+		30989	22646	22411	22577	30276	30276					0.054215897036101524
LKKNKVPFN	9	Unmodified	_LKKNKVPFN_					0	0	0		ENST00000549755.1_1_12:116445119-116445476:-|nuORF	ENST00000549755.1_1_12:116445119-116445476:-|nuORF	ENST00000549755.1_1_12:116445119-116445476:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	363.62542724609375	3	363.225598	1086.65496	0.059728	2.1695E-05	-0.48819	-0.00017732	-0.42846	-0.00015563	363.2253224270995	25.588	0.71052	25.588	25.357	26.068	0					22	13	2	0	0	0	0.22013	1	7494	7494		36.506	3.0613	1	35984000			30990	13361	22412	22578	30277	30277					0.11510301502289622
LKKNKVPFN	9	Unmodified	_LKKNKVPFN_					0	0	0		ENST00000549755.1_1_12:116445119-116445476:-|nuORF	ENST00000549755.1_1_12:116445119-116445476:-|nuORF	ENST00000549755.1_1_12:116445119-116445476:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	363.6250915527344	3	363.225598	1086.65496	-0.47957	-0.00017419	0.39714	0.00014425	-0.082431	-2.9941E-05	363.22537189799357	24.796	0.81449	25.44	25.263	26.078	0.64368					38	15	5	0	0	0	0.22013	1	8204	8204		36.506	6.6656	1	39337000			30991	13361	22412	22578	30278	30278					0.11510301502289622
LKKNPNSRR	9	Unmodified	_LKKNPNSRR_					0	0	0		tr|U7SKL3|U7SKL3_FUSNUThymidylatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thyAPE=3SV=1	tr|U7SKL3|U7SKL3_FUSNUThymidylatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thyAPE=3SV=1	tr|U7SKL3|U7SKL3_FUSNUThymidylatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thyAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	371.9599914550781	3	371.559751	1111.65742	0.58765	0.00021835	-0.20778	-7.7204E-05	0.37987	0.00014114	371.55965231196654	21.55	0.45649	21.55	21.301	21.757	0					13	8	2	0	0	0	0.79429	1	5702	5702		4.1895	4.1895	1	1759100			30992	29476	22413	22579	30279	30279					0.1060614995992637
LKKPELKIP	9	Unmodified	_LKKPELKIP_					0	0	0		ENSG00000131969|ENST00000337334|ABHD12B	ENSG00000131969|ENST00000337334|ABHD12B	ENSG00000131969|ENST00000337334|ABHD12B	MULTI-MSMS	A375_MHC_IP_R1	1	356.6412048339844	3	355.905865	1064.69577	-0.37182	-0.00013233	1.0481	0.00037304	0.67631	0.0002407	355.9047957734494	29.683	1.5557	29.683	29.403	30.959	0					82	30	4	0	0	0	0.67787	1	9521	9521		8.9762	2.3459	1	25477000			30993	4362	22414	22580	30280	30280					0.1660064282186795
LKKQEQLK	8	Unmodified	_LKKQEQLK_					0	0	0		ENST00000489483.5_1_3:48665668-48668656:-|nuORF;nc|ENSG00000225697|Q9BXS9-6|SLC26A6;nc|ENSG00000225697|Q9BXS9-5|SLC26A6;nc|ENSG00000225697|Q9BXS9-7|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;ENSG00000225697|ENST00000395550|SLC26A6;ENST00000469693.5_1_3:48665668-48667128:-|nuORF;ENST00000462009.6_1_3:48665195-48667128:-|nuORF	ENST00000489483.5_1_3:48665668-48668656:-|nuORF	ENST00000489483.5_1_3:48665668-48668656:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	508.21832275390625	2	507.818941	1013.62333	-0.38389	-0.00019495	-0.21314	-0.00010823	-0.59702	-0.00030318	507.81877747870476	25.085	0.25138	25.085	24.953	25.204	0					7	4	2	0	0	0	0.23546	1	7281	7281		65.235	0	1	10216000			30994	9699	22415	22581	30281	30281					0.11706308748318861
LKKQILLIL	9	Unmodified	_LKKQILLIL_					0	0	0		ENST00000354566.7_1_11:85436805-85436946:-|nuORF	ENST00000354566.7_1_11:85436805-85436946:-|nuORF	ENST00000354566.7_1_11:85436805-85436946:-|nuORF	MSMS	A375_MHC_IP_R1	1	541.4320678710938	2	541.389003	1080.76345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.426	1	93.426	92.926	93.926	0								0	0	0	0.15486	1	34342	34342		0.6015	0	1				30995	10941	22416	22582	30282	30282					0.22630092752706332
LKKRLQLPV	9	Unmodified	_LKKRLQLPV_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	A375_MHC_IP_R2	2	365.61309814453125	3	365.585126	1093.73355	-0.26436	-9.6646E-05	0.32278	0.000118	0.058417	2.1356E-05	365.58526150614034	38.771	0.50866	39.546	39.2	39.708	0.77451					19	9	3	0	0	0	0.75032	1	14348	14348		2.4985	0.41248	1	1613000			30996	2877	22417	22583	30283	30283					0.19043153807342605
LKKTRIRVP	9	Unmodified	_LKKTRIRVP_					0	0	0		ENST00000354955.4_1_1:203320311-203320362:-|nuORF	ENST00000354955.4_1_1:203320311-203320362:-|nuORF	ENST00000354955.4_1_1:203320311-203320362:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	370.5978698730469	3	370.920509	1109.7397	-0.075793	-2.8113E-05	0.062785	2.3288E-05	-0.013008	-4.825E-06	370.9204744650453	25.84	0.45899	26.5	26.194	26.653	0.65992					10	8	2	0	0	0	0.81275	1	8723	8723		0.96228	0	1	1209300			30997	10949	22418	22584	30284	30284					0.18921672038868564
LKKTTELRK	9	Unmodified	_LKKTTELRK_					0	0	0			REV__ENSG00000111300|ENST00000261745|NAA25	REV__ENSG00000111300|ENST00000261745|NAA25	MULTI-MSMS	A375_MHC_IP_R1	1	373.5889587402344	3	372.908157	1115.70264	0.24739	9.2252E-05	-0.10753	-4.0098E-05	0.13986	5.2154E-05	372.9080643069663	33.197	1.1144	33.197	32.887	34.001	0					36	21	3	0	0	0	0.67152	1	10823	10823		9.544	0	1	30452000	+		30998	17663	22419	22585	30285	30285					0.14941955702465748
LKKVNEAF	8	Unmodified	_LKKVNEAF_					0	0	0		ENSG00000122180|ENST00000241651|MYOG	ENSG00000122180|ENST00000241651|MYOG	ENSG00000122180|ENST00000241651|MYOG	MULTI-MSMS	A375_MHC_IP_R1	1	475.1788635253906	2	474.779285	947.544017	-0.77906	-0.00036988	0.052886	2.5109E-05	-0.72617	-0.00034477	474.77929859421056	26.757	0.45173	26.757	26.626	27.078	0					19	8	3	0	0	0	0.57209	1	8044	8044		46.021	4.1813	1	5801000			30999	3765	22420	22586	30286	30286					0.06814661794180665
LKKVNEAF	8	Unmodified	_LKKVNEAF_					0	0	0		ENSG00000122180|ENST00000241651|MYOG	ENSG00000122180|ENST00000241651|MYOG	ENSG00000122180|ENST00000241651|MYOG	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	474.779285	947.544017	-0.77906	-0.00036988	0.052886	2.5109E-05	-0.72617	-0.00034477	474.77929859421056	26.757	0.45173	26.757	26.626	27.078	0	-0.013977	1.6255E-05	NaN	46.021	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5801000			31000	3765	22420	22586							0.06814661794180665
LKKVQKELLY	10	Unmodified	_LKKVQKELLY_					0	0	0		ENST00000401722.7_2_12:98995347-98995383:+|nuORF	ENST00000401722.7_2_12:98995347-98995383:+|nuORF	ENST00000401722.7_2_12:98995347-98995383:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	631.4282836914062	2	631.397556	1260.78056	-0.53724	-0.00033921	0.89988	0.00056818	0.36264	0.00022897	631.3971687592885	89.066	0.45679	89.066	88.815	89.272	0					12	8	2	0	0	0	0.71944	1	32720	32720		3.5965	1.3137	1	2346900			31001	11560	22421	22587	30287	30287					0.1605996856785623
LKKYLRLRAI	10	Unmodified	_LKKYLRLRAI_					0	0	0			REV__AluJo_dup72535|chr19:43608346-43608640:+|1.6942657444946003|0.2207392627405336|2.94|472.0|2|1|sense	REV__AluJo_dup72535|chr19:43608346-43608640:+|1.6942657444946003|0.2207392627405336|2.94|472.0|2|1|sense	MSMS	A375_MHC_IP_R1	1	425.68731689453125	3	425.28708	1272.83941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.002	1	18.002	17.502	18.502	0								0	0	0	0.15637	1	4258	4258		0.15932	0	1		+		31002	15364	22422	22588	30288	30288					0.21390489652821998
LKLANNTTV	9	Unmodified	_LKLANNTTV_					0	0	0		ENSG00000074657|ENST00000591808|ZNF532;ENST00000394628.2_1_10:79492006-79493143:+|nuORF	ENSG00000074657|ENST00000591808|ZNF532	ENSG00000074657|ENST00000591808|ZNF532	MULTI-MSMS	A375_MHC_IP_R1	1	487.6874084472656	2	487.287474	972.560395	-0.49971	-0.0002435	-0.31552	-0.00015375	-0.81522	-0.00039725	487.28741214709464	32.598	0.80901	32.598	32.231	33.04	0					43	15	5	0	0	0	0.033557	1	10500	10500		71.922	0	1	22064000			31003	1588	22423	22589	30289	30289					0.07301742960260071
LKLANNTTV	9	Unmodified	_LKLANNTTV_					0	0	0		ENSG00000074657|ENST00000591808|ZNF532;ENST00000394628.2_1_10:79492006-79493143:+|nuORF	ENSG00000074657|ENST00000591808|ZNF532	ENSG00000074657|ENST00000591808|ZNF532	MULTI-SECPEP	A375_MHC_IP_R2	2	487.6874084472656	2	487.287474	972.560395	-0.60268	-0.00029368	0.2146	0.00010457	-0.38808	-0.00018911	487.28753583396514	31.742	0.71054	32.478	32.249	32.96	0.73691					35	13	4	0	0	0	0.012104	1	11223	11223		81.89	0	1	27883000			31004	1588	22423	22589	30290	30290					0.07301742960260071
LKLDFERNY	9	Unmodified	_LKLDFERNY_					0	0	0		FSIP2|p.T6548Lfs*12|1|0.3|ENSG00000188738|chr2:185808944-185808944|A/-|frameshift_variant;nc|ENSG00000188738|Q5CZC0-2|FSIP2;FSIP2|p.N5425Kfs*23|1|0.39|ENSG00000188738|chr2:185805576-185805577|-/A|frameshift_variant;FSIP2|p.P6584Ifs*9|1|0.07|ENSG00000188738|chr2:185809054-185809055|-/TATTTTGACTGGTTTTTTTCCA|frameshift_variant;ENSG00000188738|ENST00000424728|FSIP2	FSIP2|p.T6548Lfs*12|1|0.3|ENSG00000188738|chr2:185808944-185808944|A/-|frameshift_variant	FSIP2|p.T6548Lfs*12|1|0.3|ENSG00000188738|chr2:185808944-185808944|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	599.716552734375	2	599.316763	1196.61897	-0.090053	-5.397E-05	-0.50385	-0.00030196	-0.5939	-0.00035593	599.3163202485979	45.443	0.30113	45.443	45.284	45.585	0					9	5	2	0	0	0	0.67152	1	15937	15937		13.906	2.2658	1	1811900			31005	14025	22424	22590	30291	30291					0.028527995347758406
LKLELFLVEAI	11	Unmodified	_LKLELFLVEAI_					0	0	0			REV__ENSG00000051341|ENST00000264233|POLQ	REV__ENSG00000051341|ENST00000264233|POLQ	MSMS	A375_MHC_IP_R1	1	644.4627075195312	2	644.399764	1286.78498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.69	1	141.69	141.19	142.19	0								0	0	0	0.16334	1	54378	54378		1.3295	0	1		+		31006	16391	22425	22591	30292	30292					0.15305432990771806
LKLFNNGW	8	Unmodified	_LKLFNNGW_					0	0	0			REV__ENST00000382159.7_1_19:2514614-2514812:-|nuORF	REV__ENST00000382159.7_1_19:2514614-2514812:-|nuORF	MSMS	A375_MHC_IP_R2	2	496.18988037109375	2	496.271627	990.528701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.443	1	43.216	42.716	43.716	0.7724								0	0	0	0.16876	1	15789	15789		19.439	0	1		+		31007	24243	22426	22592	30293	30293					0.03305794996992972
LKLHGHKD	8	Unmodified	_LKLHGHKD_					0	0	0			REV__ENSG00000134318|ENST00000315872|ROCK2	REV__ENSG00000134318|ENST00000315872|ROCK2	MULTI-MSMS	A375_MHC_IP_R2	2	474.6746520996094	2	474.274701	946.534849	-0.3604	-0.00017093	0.41458	0.00019662	0.054179	2.5696E-05	474.27464871786935	141	0.25734	141.04	140.91	141.17	0.04216					7	4	2	0	0	0	0.77797	1	55207	55207		2.3027	0	1	1318900	+		31008	18770	22427	22593	30294	30294					0.05944313228519604
LKLHGHKD	8	Unmodified	_LKLHGHKD_					0	0	0			REV__ENSG00000134318|ENST00000315872|ROCK2	REV__ENSG00000134318|ENST00000315872|ROCK2	MULTI-MATCH	A375_MHC_IP_R1	1		2	474.274701	946.534849	-0.83761	-0.00039726	0.10978	5.2065E-05	-0.72783	-0.00034519	474.27455036380314	141	0.25821	141	140.86	141.11	0	-0.017793	-0.0001325	NaN	2.3027	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1432800	+		31009	18770	22427	22593							0.05944313228519604
LKLHGHKD	8	Unmodified	_LKLHGHKD_					0	0	0			REV__ENSG00000134318|ENST00000315872|ROCK2	REV__ENSG00000134318|ENST00000315872|ROCK2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	474.274701	946.534849	-0.3604	-0.00017093	0.41458	0.00019662	0.054179	2.5696E-05	474.27464871786935	141	0.25734	141.04	140.91	141.17	0.04216	0.017793	0.00015662	NaN	2.3027	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1318900	+		31010	18770	22427	22593							0.05944313228519604
LKLIRLAQF	9	Unmodified	_LKLIRLAQF_					0	0	0		ENST00000466027.1_1_13:96289346-96294343:-|nuORF;nc|ENSG00000134874|Q86YF9-3|DZIP1;nc|ENSG00000134874|Q86YF9-2|DZIP1;ENSG00000134874|ENST00000376829|DZIP1	ENST00000466027.1_1_13:96289346-96294343:-|nuORF	ENST00000466027.1_1_13:96289346-96294343:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	368.2732849121094	3	367.90961	1100.707	-0.30911	-0.00011373	-0.038929	-1.4322E-05	-0.34804	-0.00012805	367.90958420177003	37.303	0.25428	38.074	37.917	38.171	0.7709					7	4	2	0	0	0	0.75032	1	13640	13640		2.4985	1.427	1	738360			31011	4618	22428	22594	30295	30295					0.160674649160228
LKLKKRHLIIL	11	Unmodified	_LKLKKRHLIIL_					0	0	0			REV__ENST00000296422.11_1_4:103911031-103940882:-|nuORF	REV__ENST00000296422.11_1_4:103911031-103940882:-|nuORF	MSMS	A375_MHC_IP_R2	2	687.7359619140625	2	687.987207	1373.95986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.304	1	56.054	55.554	56.554	0.75075								0	0	0	0.1636	1	20890	20890		0	0	1		+		31012	23388	22429	22595	30296	30296					0.2878389764646272
LKLKLGLTLNK	11	Unmodified	_LKLKLGLTLNK_					0	0	0		nc|ENSG00000148814|Q9C0I9-2|LRRC27;ENSG00000148814|ENST00000368614|LRRC27;ENST00000475747.5_1_10:134165051-134188743:+|nuORF;ENST00000462656.5_1_10:134180160-134188743:+|nuORF	nc|ENSG00000148814|Q9C0I9-2|LRRC27	nc|ENSG00000148814|Q9C0I9-2|LRRC27	MSMS	A375_MHC_IP_R1	1	414.63519287109375	3	414.283224	1239.82784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.38	1	142.38	141.88	142.88	0								0	0	0	0.16351	1	54631	54631		0.45452	0.046251	1				31013	5762	22430	22596	30297	30297					0.21752247838844596
LKLLAKLVRRV	11	Unmodified	_LKLLAKLVRRV_					0	0	0			REV__ENST00000414406.2_1_12:20095069-20095366:+|nuORF	REV__ENST00000414406.2_1_12:20095069-20095366:+|nuORF	MSMS	A375_MHC_IP_R1	1	655.0025024414062	2	654.963732	1307.91291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.515	1	98.515	98.015	99.015	0								0	0	0	0.16354	1	36195	36195		0.30703	0	1		+		31014	24506	22431	22597	30298	30298					0.27127038095295575
LKLLEEKLKSV	11	Unmodified	_LKLLEEKLKSV_					0	0	0		ENSG00000187231|ENST00000428443|SESTD1	ENSG00000187231|ENST00000428443|SESTD1	ENSG00000187231|ENST00000428443|SESTD1	MULTI-MSMS	A375_MHC_IP_R2	2	650.8156127929688	2	650.415946	1298.81734	-0.54225	-0.00035269	-0.10188	-6.6266E-05	-0.64413	-0.00041895	650.4156320890447	143.49	2.4214	143.52	142.52	144.95	0.024414					73	50	2	0	0	0	0.73902	1	56229	56229		0.30703	0.30703	1	655460			31015	8813	22432	22598	30299	30299					0.17988220393749543
LKLLSLKPVQS	11	Unmodified	_LKLLSLKPVQS_					0	0	0		ENST00000219169.8_1_16:67905422-67905869:+|nuORF	ENST00000219169.8_1_16:67905422-67905869:+|nuORF	ENST00000219169.8_1_16:67905422-67905869:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	409.6117248535156	3	409.267463	1224.78056	-0.017378	-7.1124E-06	0.54818	0.00022435	0.5308	0.00021724	409.2675282582802	30.988	0.30408	31.707	31.517	31.821	0.71857					7	5	2	0	0	0	0.73698	1	10945	10945		2.2527	0.51045	1	1330200			31016	10103	22433	22599	30300	30300					0.17715968567858909
LKLNEMDFD	9	Unmodified	_LKLNEMDFD_					0	0	0			REV__tr|U7SUE8|U7SUE8_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01129PE=4SV=1	REV__tr|U7SUE8|U7SUE8_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01129PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	375.91461181640625	3	375.514597	1123.52196	0.13177	4.9482E-05	0.73316	0.00027531	0.86493	0.00032479	375.5147484121263	84.956	0.51099	84.956	84.8	85.311	0					20	9	3	0	0	0	0.51106	1	31143	31143		13.615	0	1	2155200	+		31017	28551	22434	22600	30301	30301					-0.034859307365422865
LKLPDRQYI	9	Unmodified	_LKLPDRQYI_					0	0	0			REV__ENSG00000166888|ENST00000300134|STAT6	REV__ENSG00000166888|ENST00000300134|STAT6	MSMS	A375_MHC_IP_R1	1	573.2804565429688	2	573.337498	1144.66044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.645	1	91.645	91.145	92.145	0								0	0	0	0.15486	1	33672	33672		12.532	3.9383	1		+		31018	20713	22435	22601	30302	30302					0.09389980294099587
LKLPRVSYY	9	Unmodified	_LKLPRVSYY_					0	0	0		ENSG00000148411|ENST00000277554|NACC2	ENSG00000148411|ENST00000277554|NACC2	ENSG00000148411|ENST00000277554|NACC2	MULTI-MSMS	A375_MHC_IP_R1	1	571.28369140625	2	569.834591	1137.65463	-0.4424	-0.0002521	-0.025547	-1.4558E-05	-0.46795	-0.00026666	569.8347211388157	90.161	1.4691	90.161	89.73	91.199	0					87	28	5	0	0	0	0.6898	1	33246	33246		7.9102	0	1	38926000			31019	5741	22436	22602	30303	30303					0.09130881782425604
LKLRLILI	8	Unmodified	_LKLRLILI_					0	0	0			REV__nc|ENSG00000291139|Q6ZN68-3|DPY19L2P2	REV__nc|ENSG00000291139|Q6ZN68-3|DPY19L2P2	MSMS	A375_MHC_IP_R1	1	491.7428894042969	2	491.362788	980.711023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.193	1	80.193	79.693	80.693	0								0	0	0	0.16876	1	29279	29279		9.3474	0	1		+		31020	27561	22437	22603	30304	30304					0.21989554409765333
LKLRPILKI	9	Unmodified	_LKLRPILKI_					0	0	0		ENST00000547581.5_1_12:48529049-48539488:+|nuORF;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;nc|ENSG00000152556|P08237-2|PFKM	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	547.6995849609375	2	547.394619	1092.77469	-0.68943	-0.00037739	0.27365	0.00014979	-0.41579	-0.0002276	547.8961085155687	91.139	0.20326	91.873	91.767	91.97	0.7345					5	3	2	0	0	0	0.81254	1	34709	34709		0.52476	0	1	632000			31021	5973	22438	22604	30305	30305					0.2320091484684781
LKLSINHKI	9	Unmodified	_LKLSINHKI_					0	0	0		ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP	ENST00000315147.8_1_5:70265933-70281744:-|nuORF	ENST00000315147.8_1_5:70265933-70281744:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	355.2695007324219	3	355.897481	1064.67061	0.024723	8.7989E-06	-1.0284	-0.00036599	-1.0036	-0.00035719	355.89726862620944	25.13	0.20186	25.13	25.002	25.204	0					5	3	2	0	0	0	0.76827	1	7303	7303		4.1895	0	1	2430600			31022	9836	22439	22605	30306	30306					0.1408658801931324
LKLTGAIANI	10	Unmodified	_LKLTGAIANI_					0	0	0			REV__nc|ENSG00000159842|Q12979-4|ABR	REV__nc|ENSG00000159842|Q12979-4|ABR	MULTI-SECPEP	A375_MHC_IP_R2	2	507.2051696777344	2	507.321317	1012.62808	-0.74082	-0.00037583	-0.61643	-0.00031273	-1.3572	-0.00068856	507.32115536948737	77.072	0.301	77.815	77.607	77.908	0.74293					10	5	2	0	0	0	0.72086	1	29277	29277		13.042	2.9685	1	1033600	+		31023	20137	22440	22606	30307	30307					0.1222719289107772
LKLVKSRPF	9	Unmodified	_LKLVKSRPF_					0	0	0			REV__ENST00000490187.1_1_20:25205773-25206230:+|nuORF	REV__ENST00000490187.1_1_20:25205773-25206230:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	363.9292907714844	3	363.237726	1086.69135	0.20042	7.2799E-05	-0.25269	-9.1788E-05	-0.052277	-1.8989E-05	363.2376148730885	31.856	0.4079	31.856	31.616	32.024	0					17	7	3	0	0	0	0.3489	1	10194	10194		27.223	4.5652	1	5496600	+		31024	22302	22441	22607	30308	30308					0.15147178398979122
LKNDIKQRL	9	Unmodified	_LKNDIKQRL_					0	0	0		nc|ENSG00000129680|Q8IWC1-2|MAP7D3;nc|ENSG00000129680|Q8IWC1-3|MAP7D3;nc|ENSG00000129680|Q8IWC1-4|MAP7D3;ENSG00000129680|ENST00000316077|MAP7D3	nc|ENSG00000129680|Q8IWC1-2|MAP7D3	nc|ENSG00000129680|Q8IWC1-2|MAP7D3	MULTI-SECPEP	A375_MHC_IP_R2	2	376.9679870605469	3	376.568024	1126.68224	0.13117	4.9393E-05	0.16562	6.2367E-05	0.29678	0.00011176	376.568140878583	30.24	0.50688	30.958	30.658	31.165	0.71857					11	9	2	0	0	0	0.56537	1	10669	10669		21.59	0	1	1678700			31025	4207	22442	22608	30309	30309					0.12396785042665215
LKNFNLKKL	9	Unmodified	_LKNFNLKKL_					0	0	0		ENST00000535141.6_1_15:66807891-66811221:+|nuORF;ENST00000565960.1_1_15:66807891-66811252:+|nuORF	ENST00000535141.6_1_15:66807891-66811221:+|nuORF	ENST00000535141.6_1_15:66807891-66811221:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	373.6415100097656	3	373.241248	1116.70191	0.53932	0.0002013	-0.34822	-0.00012997	0.1911	7.1327E-05	373.2410868768919	47.901	0.60505	47.901	47.618	48.223	0					35	11	4	0	0	0	0.056914	1	16831	16831		61.602	23.426	1	32060000			31026	13222	22443	22609	30310	30310					0.1482316105341397
LKNFNLKKL	9	Unmodified	_LKNFNLKKL_					0	0	0		ENST00000535141.6_1_15:66807891-66811221:+|nuORF;ENST00000565960.1_1_15:66807891-66811252:+|nuORF	ENST00000535141.6_1_15:66807891-66811221:+|nuORF	ENST00000535141.6_1_15:66807891-66811221:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	373.64117431640625	3	373.241248	1116.70191	-0.039188	-1.4627E-05	-0.12324	-4.5997E-05	-0.16243	-6.0624E-05	373.24113411468716	25.409	0.50819	26.053	25.924	26.433	0.64368					19	9	4	0	0	0	0.67152	1	8516	8516		9.544	2.4423	1	8946100			31027	13222	22443	22609	30311	30311					0.1482316105341397
LKNFNLKKL	9	Unmodified	_LKNFNLKKL_					0	0	0		ENST00000535141.6_1_15:66807891-66811221:+|nuORF;ENST00000565960.1_1_15:66807891-66811252:+|nuORF	ENST00000535141.6_1_15:66807891-66811221:+|nuORF	ENST00000535141.6_1_15:66807891-66811221:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	373.64111328125	3	373.241248	1116.70191	0.58683	0.00021903	-0.19944	-7.4441E-05	0.38739	0.00014459	373.2411140274643	46.803	0.55907	47.565	47.258	47.817	0.76127					33	10	4	0	0	0	0.024574	1	17506	17506		79.596	33.856	1	30291000			31028	13222	22443	22609	30312	30312					0.1482316105341397
LKNPKVVRL	9	Unmodified	_LKNPKVVRL_					0	0	0		ENSG00000203908|ENST00000370367|KHDC3L	ENSG00000203908|ENST00000370367|KHDC3L	ENSG00000203908|ENST00000370367|KHDC3L	MULTI-MSMS	A375_MHC_IP_R2	2	356.3046875	3	356.241359	1065.70225	-0.94639	-0.00033714	0.58552	0.00020859	-0.36088	-0.00012856	356.24055864298947	28.887	1.7596	29.585	29.234	30.993	0.69872					67	34	3	0	0	0	0.69884	1	9982	9982		7.1017	0	1	13883000			31029	9400	22444	22610	30313	30313					0.17202580773277987
LKNVLVTLY	9	Unmodified	_LKNVLVTLY_					0	0	0		ENSG00000113140|ENST00000231061|SPARC	ENSG00000113140|ENST00000231061|SPARC	ENSG00000113140|ENST00000231061|SPARC	MSMS	A375_MHC_IP_R1	1	354.9225158691406	3	354.890104	1061.64848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.139	1	52.139	51.639	52.639	0								0	0	0	0.15486	1	18530	18530		1.1933	0	1				31030	3126	22445	22611	30314	30314					0.12012363550911687
LKPAFNNLTV	10	Unmodified	_LKPAFNNLTV_					0	0	0		PCDH17|p.S820F|1|0.3|ENSG00000118946|chr13:57635005-57635005|C/T|missense_variant	PCDH17|p.S820F|1|0.3|ENSG00000118946|chr13:57635005-57635005|C/T|missense_variant	PCDH17|p.S820F|1|0.3|ENSG00000118946|chr13:57635005-57635005|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	373.2681884765625	3	372.885241	1115.63389	0.091553	3.4139E-05	-0.53643	-0.00020003	-0.44488	-0.00016589	372.8851152266543	38.635	0.30611	39.409	39.25	39.556	0.77451					9	5	2	0	0	0	0.69871	1	14271	14271		12.873	5.3955	1	1377600			31031	15116	22446	22612	30315	30315					0.08070291402736984
LKPCQTTKKL	10	Unmodified	_LKPCQTTKKL_					0	0	0			REV__nc|ENSG00000105982|Q9H0A6-6|RNF32	REV__nc|ENSG00000105982|Q9H0A6-6|RNF32	MULTI-MSMS	A375_MHC_IP_R1	1	387.6338806152344	3	387.233765	1158.67946	0.42211	0.00016345	-0.04919	-1.9048E-05	0.37292	0.00014441	387.23371178265205	37.473	0.40937	37.473	37.249	37.658	0					16	7	3	0	0	0	0.70395	1	12649	12649		10.527	0.9835	1	4829700	+		31032	17423	22447	22613	30316	30316					0.10647193593467819
LKPDRKVKL	9	Unmodified	_LKPDRKVKL_					0	0	0		GAB1|p.P531L|1|0.28|ENSG00000109458|chr4:143459391-143459391|C/T|missense_variant	GAB1|p.P531L|1|0.28|ENSG00000109458|chr4:143459391-143459391|C/T|missense_variant	GAB1|p.P531L|1|0.28|ENSG00000109458|chr4:143459391-143459391|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	366.28204345703125	3	366.244881	1095.71281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.773	1	40.773	40.273	41.273	0								0	0	0	0.15486	1	14035	14035		9.544	0	1				31033	14029	22448	22614	30317	30317					0.16878563427712834
LKPEAPRLPP	10	Unmodified	_LKPEAPRLPP_					0	0	0		ENSG00000129673|ENST00000392492|AANAT;nc|ENSG00000129673|Q16613-2|AANAT	ENSG00000129673|ENST00000392492|AANAT	ENSG00000129673|ENST00000392492|AANAT	MULTI-MSMS	A375_MHC_IP_R2	2	373.629150390625	3	373.229119	1116.66553	-0.075965	-2.8353E-05	0.11614	4.3348E-05	0.040177	1.4995E-05	373.22913120469946	33.887	0.40417	34.64	34.399	34.803	0.75225					19	7	3	0	0	0	0.47255	2	12201	12201;12217		20.871	0.88424	1	3284200			31034	4206	22449	22615	30318;30319	30318					0.11186284156701731
LKPFLSRIC	9	Unmodified	_LKPFLSRIC_					0	0	0		ENST00000577716.5_1_17:56493054-56494464:-|nuORF;ENST00000584437.5_1_17:56494308-56494482:-|nuORF	ENST00000577716.5_1_17:56493054-56494464:-|nuORF	ENST00000577716.5_1_17:56493054-56494464:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1076.3408203125	1	1076.6285	1075.62122	-0.1301	-0.00014007	-2.161	-0.0023266	-2.2911	-0.0024666	1076.6281609928817	120.68	0.6047	120.68	120.3	120.91	0					16	11	2	0	0	0	0.78798	1	44556	44556		3.9444	0	1	50549000			31035	13649	22450	22616	30320	30320					0.0864355673886621
LKPGAPVR	8	Unmodified	_LKPGAPVR_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	A375_MHC_IP_R1	1	419.668701171875	2	419.268887	836.523222	-0.25039	-0.00010498	0.33809	0.00014175	0.087702	3.6771E-05	419.2689042720057	29.751	0.89813	29.751	29.453	30.351	0					19	17	2	0	0	0	0.75805	1	9381	9381		18.135	0	1	7180900			31036	4149	22451	22617	30321	30321					0.09842116205174989
LKPGSWRHRV	10	Unmodified	_LKPGSWRHRV_					0	0	0			REV__ENST00000404025.2_1_2:32489892-32490824:-|nuORF	REV__ENST00000404025.2_1_2:32489892-32490824:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	412.97491455078125	3	412.575513	1234.70471	0.07039	2.9041E-05	-0.88628	-0.00036566	-0.81589	-0.00033662	412.5751425128145	19.528	0.53787	19.528	19.238	19.776	0					29	10	4	0	0	0	0.79457	1	4883	4883		17.863	3.0253	1	19483000	+		31037	24422	22452	22618	30322	30322					0.09674429230926762
LKPKVPKK	8	Unmodified	_LKPKVPKK_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-SECPEP	A375_MHC_IP_R1	1	469.7314453125	2	469.331488	936.648422	-0.40315	-0.00018921	0.39859	0.00018707	-0.0045527	-2.1367E-06	469.3316719135438	58.407	0.45637	58.407	58.177	58.633	0					17	8	3	0	0	0	0.972	1	20990	20990		11.64	5.8799	1	1356900			31038	4343	22453	22619	30323	30323					0.17756408341551833
LKQATELESI	10	Unmodified	_LKQATELESI_					0	0	0			REV__nc|ENSG00000165695|Q96MA6-2|AK8	REV__nc|ENSG00000165695|Q96MA6-2|AK8	MULTI-SECPEP	A375_MHC_IP_R1	1	566.1781616210938	2	566.316428	1130.6183	-0.53408	-0.00030246	0.088416	5.0072E-05	-0.44567	-0.00025239	566.3164021510366	46.989	0.40984	46.989	46.749	47.159	0					11	7	2	0	0	0	0.91057	1	16520	16520		11.495	11.495	1	1136700	+		31039	20615	22454	22620	30324	30324					0.05821960095022405
LKQATELESI	10	Unmodified	_LKQATELESI_					0	0	0			REV__nc|ENSG00000165695|Q96MA6-2|AK8	REV__nc|ENSG00000165695|Q96MA6-2|AK8	MULTI-MATCH	A375_MHC_IP_R2	2		2	566.316428	1130.6183	-0.35494	-0.00020101	-0.14891	-8.433E-05	-0.50385	-0.00028534	566.3161896742785	46.015	0.25323	46.78	46.704	46.957	0.76519	-0.10455	-0.00018882	NaN	7.609	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1347000	+		31040	20615	22454	22620							0.05821960095022405
LKQDVPSSL	9	Unmodified	_LKQDVPSSL_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1;KNTC1|p.Y1229Cfs*17|1|0.23|ENSG00000184445|chr12:122586712-122586733|TATCCCTTGGAGTCTACCAGTT/-|frameshift_variant	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-SECPEP	A375_MHC_IP_R2	2	493.641845703125	2	493.779482	985.544411	-0.64278	-0.00031739	0.80069	0.00039536	0.15791	7.7972E-05	493.7795981720987	39.143	0.51093	39.917	39.708	40.219	0.77451					11	9	2	0	0	0	0.73363	1	14424	14424		3.5965	0	1	1026300			31041	8585	22455	22621	30325	30325					0.05106036723384477
LKQEKQQL	8	Unmodified	_LKQEKQQL_					0	0	0		ENSG00000198003|ENST00000356392|ODAD3;nc|ENSG00000198003|A5D8V7-2|ODAD3	ENSG00000198003|ENST00000356392|ODAD3	ENSG00000198003|ENST00000356392|ODAD3	MULTI-SECPEP	A375_MHC_IP_R1	1	508.2001647949219	2	507.800749	1013.58694	-0.43549	-0.00022114	-0.56881	-0.00028884	-1.0043	-0.00050999	507.80046331612243	28.757	0.35326	28.757	28.592	28.945	0					12	6	2	0	0	0	0.88903	1	8953	8953		30.637	12.49	1	2148100			31042	9221	22456	22622	30326	30326					0.08069431851606623
LKQELLVLGE	10	Unmodified	_LKQELLVLGE_					0	0	0			REV__ENSG00000058085|ENST00000264144|LAMC2	REV__ENSG00000058085|ENST00000264144|LAMC2	MULTI-SECPEP	A375_MHC_IP_R1	1	380.9716491699219	3	381.232418	1140.67542	0.66758	0.0002545	1.2893	0.00049151	1.9569	0.00074602	381.5672688266787	45.431	0.24986	45.431	45.234	45.484	0					6	4	2	0	0	0	0.81532	1	15854	15854		9.2438	0	1	678720	+		31043	16430	22457	22623	30327	30327					0.11071427371439313
LKQKKSTLASV	11	Unmodified	_LKQKKSTLASV_					0	0	0		nc|ENSG00000116830|Q9UNY4-2|TTF2;ENSG00000116830|ENST00000369466|TTF2	nc|ENSG00000116830|Q9UNY4-2|TTF2	nc|ENSG00000116830|Q9UNY4-2|TTF2	MSMS	A375_MHC_IP_R2	2	601.8748168945312	2	601.876988	1201.73942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.64	1	120.18	119.68	120.68	0.5321								0	0	0	0.16302	1	45587	45587		2.9952	1.151	1				31044	3436	22458	22624	30328	30328					0.1466220752836307
LKQLRQRL	8	Unmodified	_LKQLRQRL_					0	0	0			REV__nc|ENSG00000126001|Q9BV73-2|CEP250	REV__nc|ENSG00000126001|Q9BV73-2|CEP250	MULTI-MSMS	A375_MHC_IP_R1	1	352.2662048339844	3	352.232975	1053.6771	-0.25198	-8.8756E-05	0.30779	0.00010841	0.055807	1.9657E-05	352.23289493567955	27.709	0.35343	27.709	27.533	27.887	0					12	6	2	0	0	0	0.77374	1	8488	8488		13.906	2.4113	1	1627200	+		31045	18376	22459	22625	30329	30329					0.15240525970693852
LKQPADHEPV	10	Unmodified	_LKQPADHEPV_					0	0	0			REV__nc|ENSG00000145016|Q92622-3|RUBCN	REV__nc|ENSG00000145016|Q92622-3|RUBCN	MULTI-SECPEP	A375_MHC_IP_R2	2	377.953369140625	3	378.536501	1132.58767	-0.26527	-0.00010041	1.8349	0.00069457	1.5696	0.00059416	378.5367327889199	24.594	1.1205	25.237	24.907	26.028	0.64368					35	21	2	0	0	0	0.76414	1	8036	8036		5.7834	0	1	6495400	+		31046	19457	22460	22626	30330	30330					0.026682265006456873
LKQPQLLFV	9	Unmodified	_LKQPQLLFV_					0	0	0			REV__ENST00000574429.1_1_17:6546189-6546336:+|nuORF	REV__ENST00000574429.1_1_17:6546189-6546336:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	543.7389526367188	2	543.33951	1084.66447	-0.84468	-0.00045895	0.11417	6.2032E-05	-0.73051	-0.00039692	543.3396075964198	120.68	0.45342	120.68	120.45	120.91	0					14	8	2	0	0	0	0.46465	1	44735	44735		30.225	1.738	1	58180000	+		31047	26300	22461	22627	30331	30331					0.12552069787784603
LKQPQLLFV	9	Unmodified	_LKQPQLLFV_					0	0	0			REV__ENST00000574429.1_1_17:6546189-6546336:+|nuORF	REV__ENST00000574429.1_1_17:6546189-6546336:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	543.33951	1084.66447	-0.84468	-0.00045895	0.11417	6.2032E-05	-0.73051	-0.00039692	543.3396075964198	120.68	0.45342	120.68	120.45	120.91	0	0	0	NaN	30.225	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58180000	+		31048	26300	22461	22627							0.12552069787784603
LKQQFDEEV	9	Unmodified	_LKQQFDEEV_					0	0	0			REV__nc|ENSG00000085276|Q03112-5|MECOM	REV__nc|ENSG00000085276|Q03112-5|MECOM	MULTI-MSMS	A375_MHC_IP_R2	2	568.6854248046875	2	568.285128	1134.5557	-0.28672	-0.00016294	0.047947	2.7248E-05	-0.23878	-0.00013569	568.2848317832857	42.674	0.71001	43.446	43.116	43.826	0.7724					20	13	2	0	0	0	0.51106	1	15910	15910		19.257	0.88389	1	3295600	+		31049	16833	22462	22628	30332	30332					-0.00619185973164349
LKQRQLTSY	9	Unmodified	_LKQRQLTSY_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-SECPEP	A375_MHC_IP_R1	1	569.2247924804688	2	568.824755	1135.63496	-0.25307	-0.00014395	0.0028577	1.6255E-06	-0.25022	-0.00014233	568.8246997618862	62.173	0.66589	62.173	61.891	62.557	0					18	12	2	0	0	0	0.65246	1	22452	22452		21.747	0	1	3408300			31050	2998	22463	22629	30333	30333					0.07256505771670163
LKQTAKTETIQ	11	Unmodified	_LKQTAKTETIQ_					0	0	0			REV__ENSG00000173166|ENST00000319170|RAPH1	REV__ENSG00000173166|ENST00000319170|RAPH1	MULTI-MSMS	A375_MHC_IP_R2	2	631.2600708007812	2	630.861534	1259.70852	-0.83068	-0.00052404	-1.1644	-0.00073457	-1.9951	-0.0012586	630.860314913319	129.95	2.6348	130.16	128.93	131.57	0.2142					106	51	4	0	0	0	0.73189	1	51522	51522		7.1017	1.8048	1	30285000	+		31051	21198	22464	22630	30334	30334					0.08905009423483534
LKRHALAI	8	Unmodified	_LKRHALAI_					0	0	0			REV__nc|ENSG00000133657|Q9H7F0-2|ATP13A3	REV__nc|ENSG00000133657|Q9H7F0-2|ATP13A3	MULTI-MSMS	A375_MHC_IP_R2	2	461.70294189453125	2	461.303262	920.59197	-0.28014	-0.00012923	-0.033079	-1.5259E-05	-0.31322	-0.00014449	461.30318108618405	147.89	0.29807	147.9	147.81	148.11	0.018692					27	12	3	0	0	0	0.77861	1	57465	57465		0	0	1	240970	+		31052	18726	22465	22631	30335	30335					0.1284978050485961
LKRIKLIYNF	10	Unmodified	_LKRIKLIYNF_					0	0	0			REV__tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1	REV__tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	654.6533203125	2	654.41354	1306.81253	-0.74448	-0.0004872	-2.6112	-0.0017088	-3.3557	-0.002196	654.4128203052894	89.479	0.50815	90.211	89.985	90.493	0.7318					11	9	2	0	0	0	0.93799	1	34155	34155		6.7232	6.3725	1	1833000	+		31053	28452	22466	22632	30336	30336					0.1713938104164754
LKRKKLLKEY	10	Unmodified	_LKRKKLLKEY_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MSMS	A375_MHC_IP_R1	1	659.53125	2	659.932097	1317.84964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.497	1	81.497	80.997	81.997	0								0	0	0	0.15591	1	29782	29782		1.6526	0	1				31054	3006	22467	22633	30337	30337					0.20343052587395505
LKRLEEEV	8	Unmodified	_LKRLEEEV_					0	0	0			REV__nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	REV__nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-MSMS	A375_MHC_IP_R2	2	508.2003479003906	2	508.292756	1014.57096	-0.76183	-0.00038723	-0.91237	-0.00046375	-1.6742	-0.00085099	508.292549888993	30.674	0.40266	31.392	31.165	31.567	0.71857					11	7	2	0	0	0	0.68328	1	10844	10844		39.957	10.876	1	1055200	+		31055	19620	22468	22634	30338	30338					0.06425725614712974
LKRLLIETSK	10	Unmodified	_LKRLLIETSK_					0	0	0			REV__ENST00000552207.1_1_12:56188062-56211500:-|nuORF	REV__ENST00000552207.1_1_12:56188062-56211500:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1201.1654052734375	1	1200.76743	1199.76016	-0.36812	-0.00044203	0.1073	0.00012885	-0.26082	-0.00031318	1200.7671959519187	149.52	1.891	149.52	148.11	150	0					154	60	4	0	0	0	0.72658	1	57098	57098		0.40072	0	1	1118800	+		31056	26051	22469	22635	30339	30339					0.16826797908038316
LKRLVLLIPV	10	Unmodified	_LKRLVLLIPV_					0	0	0		tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1	tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1	tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1	MSMS	A375_MHC_IP_R1	1	582.36083984375	2	582.415552	1162.81655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.19	1	92.19	91.69	92.69	0								0	0	0	0.15628	1	33878	33878		0.45834	0	1				31057	29570	22470	22636	30340	30340					0.2416547053535396
LKRPFKPRI	9	Unmodified	_LKRPFKPRI_					0	0	0			REV__nc|ENSG00000172943|Q9UPP1-5|PHF8	REV__nc|ENSG00000172943|Q9UPP1-5|PHF8	MULTI-MSMS	A375_MHC_IP_R1	1	385.6083679199219	3	385.588871	1153.74478	0.13679	5.2746E-05	0.1575	6.073E-05	0.29429	0.00011348	385.58874159559707	25.588	0.71178	25.588	25.255	25.966	0					32	13	3	0	0	0	0.56584	1	7609	7609		16.566	2.951	1	13228000	+		31058	21183	22471	22637	30341	30341					0.1740597590148809
LKRPFKPRI	9	Unmodified	_LKRPFKPRI_					0	0	0			REV__nc|ENSG00000172943|Q9UPP1-5|PHF8	REV__nc|ENSG00000172943|Q9UPP1-5|PHF8	MULTI-MSMS	A375_MHC_IP_R2	2	385.61334228515625	3	385.588871	1153.74478	-0.50851	-0.00019608	0.026731	1.0307E-05	-0.48178	-0.00018577	385.5888836444676	24.738	0.6603	25.382	25.161	25.822	0.64368					27	12	3	0	0	0	0.6421	1	8211	8211		12.175	2.6308	1	15864000	+		31059	21183	22471	22637	30342	30342					0.1740597590148809
LKRQKPVI	8	Unmodified	_LKRQKPVI_					0	0	0			REV__nc|ENSG00000166167|Q9Y297-2|BTRC	REV__nc|ENSG00000166167|Q9Y297-2|BTRC	MSMS	A375_MHC_IP_R2	2	491.7301330566406	2	491.332019	980.649485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.545	1	89.277	88.777	89.777	0.7318								0	0	0	0.16876	1	33697	33697		13.508	0	1		+		31060	20657	22472	22638	30343	30343					0.15838622710464278
LKRRAKLMRF	10	Unmodified	_LKRRAKLMRF_					0	0	0			REV__MYO5B|p.E902K|1|0.27|ENSG00000167306|chr18:49902701-49902701|C/T|missense_variant	REV__MYO5B|p.E902K|1|0.27|ENSG00000167306|chr18:49902701-49902701|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	659.8171997070312	2	659.916259	1317.81796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.747	1	86.747	86.247	87.247	0								0	0	0	0.15591	1	31816	31816		1.6526	0	1		+		31061	27071	22473	22639	30344	30344					0.17176781352463877
LKRRIWRMPLF	11	Unmodified	_LKRRIWRMPLF_					0	0	0		ENST00000577847.1_1_17:18087769-18087952:-|nuORF	ENST00000577847.1_1_17:18087769-18087952:-|nuORF	ENST00000577847.1_1_17:18087769-18087952:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	506.7088317871094	3	505.974619	1514.90203	-0.70502	-0.00035672	0.079279	4.0113E-05	-0.62574	-0.00031661	505.9745448279787	138.79	2.4463	138.79	138.51	140.96	0					117	47	4	0	0	0	0.73934	2	53564	53564;53771		0	0	1	35383000			31062	13651	22474	22640	30345;30346	30345					0.16517312449332167
LKRRIWRMPLF	11	Unmodified	_LKRRIWRMPLF_					0	0	0		ENST00000577847.1_1_17:18087769-18087952:-|nuORF	ENST00000577847.1_1_17:18087769-18087952:-|nuORF	ENST00000577847.1_1_17:18087769-18087952:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	506.3739318847656	3	505.974619	1514.90203	-0.53244	-0.0002694	-0.0077457	-3.9191E-06	-0.54019	-0.00027332	505.9744984334747	138.76	2.4316	138.82	138.5	140.93	0.059906					130	47	5	0	0	0	0.73934	3	54384	54384;54572;54808		0	0	1	41069000			31063	13651	22474	22640	30347;30348;30349	30347					0.16517312449332167
LKRRIWRMPLF	11	Unmodified	_LKRRIWRMPLF_					0	0	0		ENST00000577847.1_1_17:18087769-18087952:-|nuORF	ENST00000577847.1_1_17:18087769-18087952:-|nuORF	ENST00000577847.1_1_17:18087769-18087952:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	506.3741455078125	3	505.974619	1514.90203	-0.5297	-0.00026801	0.27737	0.00014034	-0.25232	-0.00012767	505.97503559506197	142.48	1.7854	142.51	141.05	142.84	0.030731					69	34	3	0	0	0	0.73924	1	55652	55652		0.094841	0.094841	1	3678600			31064	13651	22474	22640	30350	30350					0.16517312449332167
LKRRRRQYYLY	11	Unmodified	_LKRRRRQYYLY_					0	0	0			REV__nc|ENSG00000107897|Q5T8D3-4|ACBD5	REV__nc|ENSG00000107897|Q5T8D3-4|ACBD5	MULTI-MSMS	A375_MHC_IP_R2	2	539.3821411132812	3	538.982831	1613.92666	-1.2368	-0.00066662	-0.60478	-0.00032597	-1.8416	-0.00099259	538.9825491472384	57.193	0.35808	57.943	57.763	58.121	0.75015					16	6	3	0	0	0	0.73925	1	21656	21656		0.08335	0.08335	1	4364100	+		31065	17504	22475	22641	30351	30351					0.14425663856468418
LKRRRRQYYLY	11	Unmodified	_LKRRRRQYYLY_					0	0	0			REV__nc|ENSG00000107897|Q5T8D3-4|ACBD5	REV__nc|ENSG00000107897|Q5T8D3-4|ACBD5	MULTI-SECPEP	A375_MHC_IP_R2	2	539.2316284179688	3	538.982831	1613.92666	-1.2368	-0.00066662	-0.60478	-0.00032597	-1.8416	-0.00099259	538.9825491472384	57.193	0.35808	57.943	57.763	58.121	0.75015					16	6	3	0	0	0	1.0015	1	21556	21556		0.094841	0.094841	1	4364100	+		31066	17504	22475	22641	30352	30352					0.14425663856468418
LKRVGPRDKA	10	Unmodified	_LKRVGPRDKA_					0	0	0		ZNF831|p.K1462Nfs*38|1|0.42|ENSG00000124203|chr20:59254090-59254090|C/-|frameshift_variant;ENSG00000124203|ENST00000371030|ZNF831	ZNF831|p.K1462Nfs*38|1|0.42|ENSG00000124203|chr20:59254090-59254090|C/-|frameshift_variant	ZNF831|p.K1462Nfs*38|1|0.42|ENSG00000124203|chr20:59254090-59254090|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	570.75439453125	2	570.354014	1138.69348	0.0233	1.3289E-05	-0.049665	-2.8327E-05	-0.026365	-1.5038E-05	570.3541764795862	45.409	0.30002	45.409	45.234	45.534	0					13	5	3	0	0	0	0.94363	1	15904	15904		9.3831	9.3831	1	2374400			31067	3883	22476	22642	30353	30353					0.12967607136806691
LKRVGPRDKA	10	Unmodified	_LKRVGPRDKA_					0	0	0		ZNF831|p.K1462Nfs*38|1|0.42|ENSG00000124203|chr20:59254090-59254090|C/-|frameshift_variant;ENSG00000124203|ENST00000371030|ZNF831	ZNF831|p.K1462Nfs*38|1|0.42|ENSG00000124203|chr20:59254090-59254090|C/-|frameshift_variant	ZNF831|p.K1462Nfs*38|1|0.42|ENSG00000124203|chr20:59254090-59254090|C/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	570.354014	1138.69348	-0.31394	-0.00017906	-0.90779	-0.00051776	-1.2217	-0.00069682	570.3534343104895	44.423	0.25365	45.192	45.035	45.289	0.76909	-0.10865	-0.00067845	NaN	9.3831	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1672100			31068	3883	22476	22642							0.12967607136806691
LKSEKVEQI	9	Unmodified	_LKSEKVEQI_					0	0	0		ENSG00000147206|ENST00000395065|NXF3;ENST00000460791.1_1_X:102337106-102338370:-|nuORF;nc|ENSG00000147206|Q9H4D5-2|NXF3	ENSG00000147206|ENST00000395065|NXF3	ENSG00000147206|ENST00000395065|NXF3	MULTI-SECPEP	A375_MHC_IP_R1	1	537.713623046875	2	537.313689	1072.61282	-0.53564	-0.00028781	-0.35054	-0.00018835	-0.88618	-0.00047616	537.3134496613739	35.361	0.35518	35.361	35.218	35.573	0					11	6	2	0	0	0	0.50332	1	11777	11777		40.725	0	1	3150000			31069	5669	22477	22643	30354	30354					0.07942281303235177
LKSELLKYR	9	Unmodified	_LKSELLKYR_					0	0	0			REV__nc|ENSG00000115355|Q3V6T2-5|CCDC88A	REV__nc|ENSG00000115355|Q3V6T2-5|CCDC88A	MULTI-MSMS	A375_MHC_IP_R2	2	384.2800598144531	3	383.904524	1148.69174	-0.13642	-5.2373E-05	0.19868	7.6276E-05	0.062263	2.3903E-05	383.90457693370075	31.452	0.61427	32.17	31.872	32.486	0.71857					29	11	4	0	0	0	0.67152	1	11021	11021		9.544	1.935	1	23512000	+		31070	17877	22478	22644	30355	30355					0.1233455332817357
LKSFLDMSKPV	11	Unmodified	_LKSFLDMSKPV_					0	0	0			REV__ENSG00000175699|ENST00000636493|CCDC197	REV__ENSG00000175699|ENST00000636493|CCDC197	MSMS	A375_MHC_IP_R2	2	422.1706848144531	3	422.237175	1263.68969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.757	1	74.493	73.993	74.993	0.73541								0	0	0	0.16124	1	27996	27996		6.6235	1.1002	1		+		31071	21359	22479	22645	30356	30356					0.06839756528052021
LKSKNTAYLK	10	Unmodified	_LKSKNTAYLK_					0	0	0			REV__ENSG00000255151|ENST00000527482|GLYATL1B	REV__ENSG00000255151|ENST00000527482|GLYATL1B	MULTI-MSMS	A375_MHC_IP_R1	1	389.6145935058594	3	389.236163	1164.68666	0.24687	9.6091E-05	-0.00095424	-3.7142E-07	0.24592	9.5719E-05	389.2360757389041	31.692	0.30499	31.692	31.565	31.87	0					7	5	2	0	0	0	0.71267	1	10154	10154		6.6235	1.2207	1	1363100	+		31072	22872	22480	22646	30357	30357					0.11090249465542001
LKSLFFKRL	9	Unmodified	_LKSLFFKRL_					0	0	0			REV__ENST00000262293.8_2_17:57262898-57270908:+|nuORF	REV__ENST00000262293.8_2_17:57262898-57270908:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	384.2860412597656	3	384.581493	1150.72265	-0.32547	-0.00012517	1.0219	0.00039299	0.69641	0.00026782	384.5819065287738	37.785	0.3583	38.559	38.227	38.585	0.77451					8	6	2	0	0	0	0.81275	1	13780	13780		2.4985	0	1	781880	+		31073	23202	22481	22647	30358	30358					0.15331751433086538
LKSLLSNL	8	Unmodified	_LKSLLSNL_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	A375_MHC_IP_R1	1	444.6814270019531	2	444.28166	886.548768	-0.032849	-1.4594E-05	-0.2174	-9.6586E-05	-0.25025	-0.00011118	444.2815749603638	63.606	0.51164	63.606	63.326	63.837	0					15	9	2	0	0	0	0.7011	1	22998	22998		34.402	1.616	1	2833700			31074	7485	22482	22648	30359	30359					0.10095545936940198
LKSLLSNL	8	Unmodified	_LKSLLSNL_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	A375_MHC_IP_R2	2	444.6814270019531	2	444.28166	886.548768	-0.43978	-0.00019538	0.025502	1.133E-05	-0.41427	-0.00018405	444.28163655107267	62.551	0.45467	63.294	63.079	63.534	0.74263					14	8	2	0	0	0	0.67331	1	23704	23704		41.84	1.8899	1	2432800			31075	7485	22482	22648	30360	30360					0.10095545936940198
LKSPRIQKL	9	Unmodified	_LKSPRIQKL_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-MSMS	A375_MHC_IP_R1	1	361.97296142578125	3	361.572998	1081.69716	0.069282	2.5051E-05	-0.30812	-0.00011141	-0.23884	-8.6358E-05	361.5728750497655	28.313	0.90846	28.313	27.786	28.694	0					26	17	2	0	0	0	0.48411	1	8710	8710		20.581	4.8423	1	4001000			31076	7640	22483	22649	30361	30361					0.15958276910646418
LKSPRIQKL	9	Unmodified	_LKSPRIQKL_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-MSMS	A375_MHC_IP_R2	2	361.9725341796875	3	361.572998	1081.69716	-0.14539	-5.2569E-05	-0.26535	-9.5942E-05	-0.41074	-0.00014851	361.5728668853683	27.474	0.96883	28.152	27.433	28.401	0.67857					27	18	2	0	0	0	0.26911	2	9394	9394;9482		32.898	6.8771	1	3376900			31077	7640	22483	22649	30362;30363	30362					0.15958276910646418
LKSQIPKKVE	10	Unmodified	_LKSQIPKKVE_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	A375_MHC_IP_R1	1	390.6051025390625	3	390.579929	1168.71796	-0.22045	-8.6102E-05	1.6112	0.00062929	1.3907	0.00054319	390.5806835962577	38.254	0.45899	38.254	38.067	38.526	0					16	8	3	0	0	0	0.72159	1	13029	13029		2.6312	0.34846	1	2380800	+		31078	22110	22484	22650	30364	30364					0.1403482249966146
LKSQSKLSD	9	Unmodified	_LKSQSKLSD_					0	0	0		nc|ENSG00000244687|Q13404-7|UBE2V1;nc|ENSG00000244687|Q13404-2|UBE2V1	nc|ENSG00000244687|Q13404-7|UBE2V1	nc|ENSG00000244687|Q13404-7|UBE2V1	MULTI-SECPEP	A375_MHC_IP_R2	2	502.7108154296875	2	503.282389	1004.55022	-0.56854	-0.00028614	2.8483	0.0014335	2.2798	0.0011474	503.2846241484481	89.217	0.5519	89.949	89.735	90.287	0.7318					13	10	2	0	0	0	0.69507	1	34011	34011		19.257	0	1	733760			31079	14918	22485	22651	30365	30365					0.04813135235053778
LKSSQKDKV	9	Unmodified	_LKSSQKDKV_					0	0	0		DCUN1D1|p.R13C|1|0.27|ENSG00000043093|chr3:182965720-182965720|G/A|missense_variant;nc|ENSG00000150401|Q6PH85-2|DCUN1D2;ENSG00000150401|ENST00000478244|DCUN1D2;ENSG00000043093|ENST00000292782|DCUN1D1	DCUN1D1|p.R13C|1|0.27|ENSG00000043093|chr3:182965720-182965720|G/A|missense_variant	DCUN1D1|p.R13C|1|0.27|ENSG00000043093|chr3:182965720-182965720|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	516.1925659179688	2	516.806031	1031.59751	-0.97644	-0.00050463	0.40257	0.00020805	-0.57387	-0.00029658	516.8062137380603	26.87	0.46055	27.53	27.313	27.773	0.65992					11	8	2	0	0	0	0.60917	1	9137	9137		9.3831	0	1	3260800			31080	720	22486	22652	30366	30366					0.08297414506046152
LKSTLPAL	8	Unmodified	_LKSTLPAL_					0	0	0			REV__ENST00000276461.9_2_8:37613272-37613383:+|nuORF	REV__ENST00000276461.9_2_8:37613272-37613383:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	422.1706848144531	2	421.770929	841.527304	-0.087087	-3.6731E-05	0.27015	0.00011394	0.18307	7.7212E-05	421.7709186350014	73.708	0.66325	74.443	74.141	74.805	0.7354					18	12	2	0	0	0	0.46955	1	27996	27996		65.235	9.058	1	1561300	+		31081	23304	22487	22653	30367	30367					0.10020160908231901
LKSVKIENE	9	Unmodified	_LKSVKIENE_					0	0	0			REV__tr|U7T247|U7T247_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00467PE=4SV=1	REV__tr|U7T247|U7T247_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00467PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	353.9171447753906	3	353.873001	1058.59717	-0.51943	-0.00018381	0.9354	0.00033101	0.41597	0.0001472	353.8732609636422	24.316	0.20318	24.959	24.806	25.009	0.64368					5	3	2	0	0	0	0.63327	1	7895	7895		12.873	6.2422	1	800410	+		31082	28720	22488	22654	30368	30368					0.07021994786191499
LKTCYPLESR	10	Unmodified	_LKTCYPLESR_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;nc|ENSG00000137497|Q14980-5|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MSMS	A375_MHC_IP_R1	1	605.25	2	605.318448	1208.62234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.01	1	130.01	129.51	130.51	0								0	0	0	0.15496	1	50015	50015		8.1555	4.2111	1				31083	4888	22489	22655	30369	30369					0.026377263170843435
LKTFSRLFS	9	Unmodified	_LKTFSRLFS_					0	0	0			REV__ENSG00000077616|ENST00000534061|NAALAD2	REV__ENSG00000077616|ENST00000534061|NAALAD2	MULTI-SECPEP	A375_MHC_IP_R1	1	549.2271118164062	2	549.818941	1097.62333	-0.68943	-0.00037906	0.13282	7.3024E-05	-0.55662	-0.00030604	549.8187735078886	40.002	0.35717	40.002	39.794	40.151	0					11	6	2	0	0	0	0.76106	1	13647	13647		13.906	5.9959	1	2213700	+		31084	16696	22490	22656	30370	30370					0.07842308748331561
LKTFYKGRT	9	Unmodified	_LKTFYKGRT_					0	0	0			REV__ENST00000314565.8_2_12:12619058-12619151:+|nuORF	REV__ENST00000314565.8_2_12:12619058-12619151:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	372.2987060546875	3	371.885353	1112.63423	0.15308	5.6929E-05	-0.025856	-9.6155E-06	0.12723	4.7314E-05	371.8852388862193	56.21	0.40779	56.96	56.847	57.255	0.75015					11	7	2	0	0	0	0.79535	1	21319	21319		1.9064	0.9441	1	1029200	+		31085	23525	22491	22657	30371	30371					0.08241711122627748
LKTKLLEFRKE	11	Unmodified	_LKTKLLEFRKE_					0	0	0		tr|U7SU39|U7SU39_FUSNUN5-carboxyaminoimidazoleribonucleotidemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purEPE=3SV=1	tr|U7SU39|U7SU39_FUSNUN5-carboxyaminoimidazoleribonucleotidemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purEPE=3SV=1	tr|U7SU39|U7SU39_FUSNUN5-carboxyaminoimidazoleribonucleotidemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purEPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	469.6912536621094	3	468.957288	1403.85004	-0.40803	-0.00019135	-0.30736	-0.00014414	-0.7154	-0.00033549	468.95711230358916	24.673	0.40528	24.673	24.547	24.953	0					17	7	3	0	0	0	0.73807	1	7079	7079		1.2148	1.2148	1	7001500			31086	29736	22492	22658	30372	30372					0.16426427516580588
LKTLLLITH	9	Unmodified	_LKTLLLITH_					0	0	0		ENST00000311417.6_1_3:178785505-178789764:-|nuORF	ENST00000311417.6_1_3:178785505-178789764:-|nuORF	ENST00000311417.6_1_3:178785505-178789764:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	351.5852966308594	3	351.233982	1050.68012	-0.9448	-0.00033184	-0.23675	-8.3155E-05	-1.1815	-0.000415	351.23367393683486	28.823	1.0519	29.522	29.234	30.286	0.69872					35	20	2	0	0	0	0.68705	1	10285	10285		8.1555	0.67846	1	13289000			31087	10629	22493	22659	30373	30373					0.15680356304824272
LKTLLLITH	9	Unmodified	_LKTLLLITH_					0	0	0		ENST00000311417.6_1_3:178785505-178789764:-|nuORF	ENST00000311417.6_1_3:178785505-178789764:-|nuORF	ENST00000311417.6_1_3:178785505-178789764:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	351.233982	1050.68012	-0.9448	-0.00033184	-0.23675	-8.3155E-05	-1.1815	-0.000415	351.23367393683486	28.823	1.0519	29.522	29.234	30.286	0.69872	-0.049412	-0.00010868	NaN	8.1555	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13289000			31088	10629	22493	22659							0.15680356304824272
LKVAQLPL	8	Unmodified	_LKVAQLPL_					0	0	0			REV__ENSG00000165238|ENST00000427277|WNK2	REV__ENSG00000165238|ENST00000427277|WNK2	MULTI-SECPEP	A375_MHC_IP_R1	1	441.69476318359375	2	441.294571	880.574589	0.11856	5.2322E-05	0.15504	6.8418E-05	0.2736	0.00012074	441.2946144852544	45.611	0.45578	45.611	45.434	45.89	0					16	8	3	0	0	0	0.77651	1	15978	15978		20.454	0	1	4152400	+		31089	20564	22494	22660	30374	30374					0.12952440179219593
LKVDENQKA	9	Unmodified	_LKVDENQKA_					0	0	0		nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	MULTI-MSMS	A375_MHC_IP_R1	1	522.7338256835938	2	522.787838	1043.56112	-0.51471	-0.00026909	-0.28521	-0.0001491	-0.79992	-0.00041819	522.7877543947953	50.6	0.50862	50.6	50.305	50.814	0					14	9	2	0	0	0	0.46038	1	17908	17908		21.747	0.20967	1	1650800			31090	2431	22495	22661	30375	30375					0.04108537609317864
LKVGREKRL	9	Unmodified	_LKVGREKRL_					0	0	0			REV__ENST00000467661.5_1_4:1985048-1988196:-|nuORF	REV__ENST00000467661.5_1_4:1985048-1988196:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	366.6174621582031	3	366.90838	1097.70331	0.15778	5.789E-05	1.0413	0.00038206	1.1991	0.00043995	366.9085800945035	19.582	0.66123	19.582	19.368	20.03	0					15	12	2	0	0	0	0.73577	1	4956	4956		14.218	0	1	904260	+		31091	21864	22496	22662	30376	30376					0.15836795142172377
LKVNMLEQY	9	Unmodified	_LKVNMLEQY_					0	0	0			REV__CON__P35908;REV__nc|ENSG00000167767|Q6KB66-2|KRT80;REV__nc|ENSG00000170421|P05787-2|KRT8	REV__CON__P35908	MULTI-MSMS	A375_MHC_IP_R2	2	569.7041015625	2	569.302267	1136.58998	-0.36713	-0.00020901	2.4891	0.001417	2.1219	0.001208	569.3036394000835	31.281	0.35869	32	31.821	32.18	0.71857					11	6	2	0	0	0	0.60101	1	11088	11088		14.838	0	1	2408100	+	+	31092	15865;15893;27350	22497	22663	30377	30377					0.027149389141186475
LKWAAACSLVL	11	Unmodified	_LKWAAACSLVL_					0	0	0		ENST00000373325.6_1_20:37667290-37667452:+|nuORF	ENST00000373325.6_1_20:37667290-37667452:+|nuORF	ENST00000373325.6_1_20:37667290-37667452:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	392.60467529296875	3	392.22661	1173.658	0.1527	5.9893E-05	-1.171	-0.00045928	-1.0183	-0.00039939	392.22596522128987	20.109	0.30325	20.109	19.928	20.232	0					7	5	2	0	0	0	0.73189	1	5100	5100		3.5927	0	1	1356600			31093	11229	22498	22664	30378	30378					0.07811808564770217
LKWHIPNQK	9	Unmodified	_LKWHIPNQK_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-SECPEP	A375_MHC_IP_R2	2	389.280029296875	3	388.560981	1162.66111	-0.18726	-7.2762E-05	2.5975	0.0010093	2.4103	0.00093654	388.56224530384293	31.05	0.30468	31.768	31.618	31.923	0.71857					8	5	2	0	0	0	0.76827	1	10893	10893		4.1895	4.1895	1	1023700	+		31094	19422	22499	22665	30379	30379					0.08628819733780801
LKWHLNRAA	9	Unmodified	_LKWHLNRAA_					0	0	0			REV__ENST00000244745.3_2_6:21594329-21594497:+|nuORF	REV__ENST00000244745.3_2_6:21594329-21594497:+|nuORF	MSMS	A375_MHC_IP_R1	1	370.2673034667969	3	370.217325	1107.63015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.978	1	43.978	43.478	44.478	0								0	0	0	0.15486	1	15321	15321		4.897	0.36815	1		+		31095	23106	22500	22666	30380	30380					0.08063666419570836
LKWIDDVHR	9	Unmodified	_LKWIDDVHR_					0	0	0			REV__GXYLT2|p.P221H|1|0.32|ENSG00000172986|chr3:72955159-72955159|C/A|missense_variant	REV__GXYLT2|p.P221H|1|0.32|ENSG00000172986|chr3:72955159-72955159|C/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	394.95220947265625	3	394.552374	1180.63529	-0.28035	-0.00011061	-0.68921	-0.00027193	-0.96956	-0.00038254	394.5520164258004	36.26	0.45948	37.03	36.698	37.157	0.7709					11	8	2	0	0	0	0.64136	1	13202	13202		8.4443	1.3426	1	2533300	+		31096	26722	22501	22667	30381	30381					0.05219925491496724
LKWIDDVHR	9	Unmodified	_LKWIDDVHR_					0	0	0			REV__GXYLT2|p.P221H|1|0.32|ENSG00000172986|chr3:72955159-72955159|C/A|missense_variant	REV__GXYLT2|p.P221H|1|0.32|ENSG00000172986|chr3:72955159-72955159|C/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	394.552374	1180.63529	0.15851	6.2539E-05	-0.17943	-7.0794E-05	-0.020922	-8.2548E-06	394.55219303339834	37.302	0.45982	37.302	37.045	37.505	0	0.1356	0.00026657	NaN	8.4443	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3657900	+		31097	26722	22501	22667							0.05219925491496724
LKWWRWFQKWW	11	Unmodified	_LKWWRWFQKWW_					0	0	0			REV__chr12:54282823-54283812|100|241.53|0.0|24.53|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54282823-54283812|100|241.53|0.0|24.53|+|1|HNRNPA1,HNRNPA1|1	MSMS	A375_MHC_IP_R1	1	875.7928466796875	2	875.461887	1748.90922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.224	1	63.224	62.724	63.724	0								0	0	0	0.16353	1	22847	22847		0.35063	0.35063	1		+		31098	15691	22502	22668	30382	30382					0.06472368321442445
LKWYLRER	8	Unmodified	_LKWYLRER_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	A375_MHC_IP_R1	1	388.94891357421875	3	388.560981	1162.66111	0.2154	8.3697E-05	0.36362	0.00014129	0.57903	0.00022499	388.56120819601523	34.545	1.7301	34.545	34.303	36.033	0					45	33	2	0	0	0	0.7496	1	11692	11692		20.415	20.415	1	5652900	+		31099	21639	22503	22669	30383	30383					0.08628819733780801
LKWYLRER	8	Unmodified	_LKWYLRER_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	A375_MHC_IP_R1	1	388.94891357421875	3	388.560981	1162.66111	0.2154	8.3697E-05	0.36362	0.00014129	0.57903	0.00022499	388.56120819601523	34.545	1.7301	34.545	34.303	36.033	0					45	33	2	0	0	0	0.87643	1	11692	11692		20.415	5.1661	1	5652900	+		31100	21639	22503	22669	30384	30384					0.08628819733780801
LKWYLRER	8	Unmodified	_LKWYLRER_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	A375_MHC_IP_R2	2	388.9488830566406	3	388.560981	1162.66111	-0.18726	-7.2762E-05	2.5975	0.0010093	2.4103	0.00093654	388.56224530384293	31.05	0.30468	31.768	31.618	31.923	0.71857					8	5	2	0	0	0	0.77523	1	10999	10999		12.241	2.8575	1	1023700	+		31101	21639	22503	22669	30385	30385					0.08628819733780801
LKYKGGVVLKA	11	Unmodified	_LKYKGGVVLKA_					0	0	0			REV__CSNK1A1L|p.E10K|1|0.35|ENSG00000180138|chr13:37105229-37105229|C/T|missense_variant	REV__CSNK1A1L|p.E10K|1|0.35|ENSG00000180138|chr13:37105229-37105229|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	392.29254150390625	3	392.588536	1174.74378	0.27554	0.00010817	0.46141	0.00018114	0.73695	0.00028932	392.92307193755045	38.684	0.25422	38.684	38.526	38.78	0					8	4	2	0	0	0	0.9907	1	13170	13170		2.084	0	1	1638300	+		31102	15926	22504	22670	30386	30386					0.1633971674195891
LKYNCTGL	8	Unmodified	_LKYNCTGL_					0	0	0		ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF	ENSG00000213593|ENST00000278422|TMX2	ENSG00000213593|ENST00000278422|TMX2	MSMS	A375_MHC_IP_R1	1	456.14410400390625	2	456.236396	910.458238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.356	1	64.356	63.856	64.856	0								0	0	0	0.16876	1	23281	23281		9.3474	1.4373	1				31103	9573	22505	22671	30387	30387					-0.0005724638298261198
LKYSLKRSPM	10	Unmodified	_LKYSLKRSPM_					0	0	0		ENST00000343979.5_1_19:12298828-12299077:+|nuORF	ENST00000343979.5_1_19:12298828-12299077:+|nuORF	ENST00000343979.5_1_19:12298828-12299077:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	408.6239318847656	3	408.237398	1221.69036	-0.28635	-0.0001169	-0.033424	-1.3645E-05	-0.31977	-0.00013054	408.237304802676	25.598	0.45681	25.598	25.46	25.917	0					10	8	2	0	0	0	0.7154	1	7520	7520		5.4027	0.35519	1	2266700			31104	10891	22506	22672	30388	30388					0.08838595967768015
LKYWMIYL	8	Unmodified	_LKYWMIYL_					0	0	0		ENST00000558461.1_1_15:49309175-49309800:-|nuORF	ENST00000558461.1_1_15:49309175-49309800:-|nuORF	ENST00000558461.1_1_15:49309175-49309800:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	376.9408264160156	3	377.208668	1128.60417	0.16223	6.1194E-05	2.6183	0.00098766	2.7806	0.0010489	377.2091742700815	31.415	0.25641	32.134	31.923	32.18	0.71856					6	4	2	0	0	0	0.95423	1	11100	11100		9.3831	6.3109	1	749240			31105	13467	22507	22673	30389	30389					0.04501636133045395
LLAAGFCPA	9	Unmodified	_LLAAGFCPA_					0	0	0		SERPINA3|p.L22I|1|0.14|ENSG00000196136|chr14:94614505-94614505|C/A|missense_variant;SERPINA3|p.A91Pfs*6|1|0.27|ENSG00000196136|chr14:94614708-94614708|G/-|frameshift_variant;nc|ENSG00000196136|P01011-3|SERPINA3;nc|ENSG00000196136|P01011-2|SERPINA3;ENSG00000196136|ENST00000393078|SERPINA3	SERPINA3|p.L22I|1|0.14|ENSG00000196136|chr14:94614505-94614505|C/A|missense_variant	SERPINA3|p.L22I|1|0.14|ENSG00000196136|chr14:94614505-94614505|C/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	863.3648681640625	1	862.449136	861.44186	-0.26805	-0.00023118	-0.39996	-0.00034495	-0.66802	-0.00057613	862.448924327814	98.377	1.423	98.377	97.999	99.422	0					47	27	4	0	0	0	0.042019	1	36197	36197		67.413	35.296	1	8648300			31106	9003	22508	22674	30390	30390					0.0055967245091324
LLAAGFCPA	9	Unmodified	_LLAAGFCPA_					0	0	0		SERPINA3|p.L22I|1|0.14|ENSG00000196136|chr14:94614505-94614505|C/A|missense_variant;SERPINA3|p.A91Pfs*6|1|0.27|ENSG00000196136|chr14:94614708-94614708|G/-|frameshift_variant;nc|ENSG00000196136|P01011-3|SERPINA3;nc|ENSG00000196136|P01011-2|SERPINA3;ENSG00000196136|ENST00000393078|SERPINA3	SERPINA3|p.L22I|1|0.14|ENSG00000196136|chr14:94614505-94614505|C/A|missense_variant	SERPINA3|p.L22I|1|0.14|ENSG00000196136|chr14:94614505-94614505|C/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		1	862.449136	861.44186	-0.74222	-0.00064012	0.050837	4.3844E-05	-0.69138	-0.00059628	862.4492600743795	97.412	1.3751	98.168	97.822	99.197	0.75587	-0.1049	0.00019213	NaN	67.413	56	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7388000			31107	9003	22508	22674							0.0055967245091324
LLAAVRFQKL	10	Unmodified	_LLAAVRFQKL_					0	0	0			REV__nc|ENSG00000205213|Q9BXB1-2|LGR4	REV__nc|ENSG00000205213|Q9BXB1-2|LGR4	MULTI-MSMS	A375_MHC_IP_R1	1	387.31707763671875	3	386.916764	1157.72846	0.054885	2.1236E-05	0.33036	0.00012782	0.38524	0.00014906	386.91687732462066	41.858	0.7638	41.858	41.419	42.183	0					39	14	4	0	0	0	0.45806	1	14421	14421		30.703	5.7125	1	10385000	+		31108	22563	22509	22675	30391	30391					0.15590849944737784
LLAAWTARA	9	Unmodified	_LLAAWTARA_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-2|APP;ENST00000474136.5_1_21:27382178-27543016:-|nuORF	nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-SECPEP	A375_MHC_IP_R1	1	487.1850280761719	2	486.784902	971.55525	-0.20449	-9.9543E-05	0.14661	7.1367E-05	-0.057882	-2.8176E-05	486.7849595653903	63.452	0.56292	63.452	63.121	63.684	0					22	10	3	0	0	0	0.10103	1	22888	22888		71.922	8.3594	1	6102100			31109	5293	22510	22676	30392	30392					0.0683348388831746
LLAAWTARA	9	Unmodified	_LLAAWTARA_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-2|APP;ENST00000474136.5_1_21:27382178-27543016:-|nuORF	nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-SECPEP	A375_MHC_IP_R2	2	487.184814453125	2	486.784902	971.55525	-0.6811	-0.00033155	-0.11135	-5.4203E-05	-0.79244	-0.00038575	486.78499633072283	62.477	0.60757	63.22	62.976	63.584	0.74263					26	11	4	0	0	0	0.059859	1	23666	23666		71.922	1.2067	1	6308100			31110	5293	22510	22676	30393	30393					0.0683348388831746
LLAAYKKNY	9	Unmodified	_LLAAYKKNY_					0	0	0		tr|U7T190|U7T190_FUSNUTranscriptiontermination/antiterminationproteinNusAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusAPE=3SV=1	tr|U7T190|U7T190_FUSNUTranscriptiontermination/antiterminationproteinNusAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusAPE=3SV=1	tr|U7T190|U7T190_FUSNUTranscriptiontermination/antiterminationproteinNusAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	541.6871337890625	2	542.313492	1082.61243	-0.30818	-0.00016713	0.20883	0.00011325	-0.099346	-5.3877E-05	542.3135604703808	49.666	0.35422	49.666	49.439	49.793	0					9	6	2	0	0	0	0.77244	1	17574	17574		9.3474	8.8227	1	1440100			31111	29904	22511	22677	30394	30394					0.07442906374035374
LLADLLHNV	9	Unmodified	_LLADLLHNV_					0	0	0		ENST00000468793.5_1_1:3775351-3782864:+|nuORF;nc|ENSG00000169598|O76075-2|DFFB;ENSG00000169598|ENST00000378209|DFFB	ENST00000468793.5_1_1:3775351-3782864:+|nuORF	ENST00000468793.5_1_1:3775351-3782864:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	504.69805908203125	2	504.297842	1006.58113	-0.23153	-0.00011676	0.2759	0.00013913	0.044364	2.2373E-05	504.29795118950915	105.85	0.71481	105.85	105.65	106.37	0					20	13	2	0	0	0	0.06083	1	38878	38878		60.074	16.216	1	2441600			31112	7419	22512	22678	30395	30395					0.07810333339955378
LLADLLHNV	9	Unmodified	_LLADLLHNV_					0	0	0		ENST00000468793.5_1_1:3775351-3782864:+|nuORF;nc|ENSG00000169598|O76075-2|DFFB;ENSG00000169598|ENST00000378209|DFFB	ENST00000468793.5_1_1:3775351-3782864:+|nuORF	ENST00000468793.5_1_1:3775351-3782864:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	504.69744873046875	2	504.297842	1006.58113	-0.61992	-0.00031263	0.11642	5.8708E-05	-0.50351	-0.00025392	504.79927048296	104.93	0.76311	105.69	105.41	106.17	0.76308					21	14	2	0	0	0	0.054426	1	39720	39720		62.573	12.64	1	3389600			31113	7419	22512	22678	30396	30396					0.07810333339955378
LLADLNSFL	9	Unmodified	_LLADLNSFL_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|207|2|anti-sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|207|2|anti-sense	MULTI-SECPEP	A375_MHC_IP_R2	2	502.6946716308594	2	503.2844	1004.55425	-0.68627	-0.00034539	0.83692	0.00042121	0.15065	7.582E-05	503.28470064680704	129.55	0.25052	129.79	129.67	129.92	0.23946					6	4	2	0	0	0	0.73363	1	50934	50934		6.7232	0	1	1224100	+		31114	26908	22513	22679	30397	30397					0.052152247287722275
LLADLWLEL	9	Unmodified	_LLADLWLEL_					0	0	0			REV__ENSG00000185662|ENST00000523047|SMIM23	REV__ENSG00000185662|ENST00000523047|SMIM23	MULTI-SECPEP	A375_MHC_IP_R1	1	543.7035522460938	2	543.3157	1084.61685	-0.52697	-0.00028631	-0.096597	-5.2482E-05	-0.62356	-0.00033879	543.8173699885299	102.03	0.25469	102.03	101.9	102.15	0					7	4	2	0	0	0	0.60012	1	37462	37462		12.532	12.532	1	846100	+		31115	21909	22514	22680	30398	30398					0.07792370796960313
LLADMMPNFY	10	Unmodified	_LLADMMPNFY_					0	0	0			REV__tr|U7SFN4|U7SFN4_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02317PE=4SV=1	REV__tr|U7SFN4|U7SFN4_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02317PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	608.6827392578125	2	607.782853	1213.55115	-0.29773	-0.00018095	-0.16163	-9.8234E-05	-0.45936	-0.00027919	607.7816977492895	79.726	1.531	79.726	79.061	80.592	0					59	29	4	0	0	0	0.6806	1	29043	29043		14.838	0.93222	1	3691200	+		31116	28168	22515	22681	30399	30399					-0.047081097118962134
LLAEAERAV	9	Unmodified	_LLAEAERAV_					0	0	0		ENSG00000179044|ENST00000314586|EXOC3L1	ENSG00000179044|ENST00000314586|EXOC3L1	ENSG00000179044|ENST00000314586|EXOC3L1	MULTI-SECPEP	A375_MHC_IP_R2	2	486.1578674316406	2	486.279649	970.544745	-0.47217	-0.00022961	0.56497	0.00027473	0.092799	4.5126E-05	486.27983845631053	95.676	0.66254	96.426	96.041	96.703	0.75044					26	12	3	0	0	0	0.3607	1	36395	36395		26.884	0	1	2143900			31117	8200	22516	22682	30400	30400					0.05829456443234449
LLAEALNQV	9	Unmodified	_LLAEALNQV_					0	0	0		ENSG00000163932|ENST00000330452|PRKCD;nc|ENSG00000163932|Q05655-2|PRKCD	ENSG00000163932|ENST00000330452|PRKCD	ENSG00000163932|ENST00000330452|PRKCD	MULTI-SECPEP	A375_MHC_IP_R1	1	486.18170166015625	2	485.782025	969.549496	-0.31638	-0.00015369	0.20081	9.7548E-05	-0.11557	-5.6143E-05	485.78199343407323	89.805	0.55644	89.805	89.526	90.083	0					18	10	2	0	0	0	0.047455	1	32989	32989		78.149	34.291	1	2298400			31118	6746	22517	22683	30401	30401					0.06350340586004677
LLAEAVCQDY	10	Unmodified	_LLAEAVCQDY_					0	0	0		ENST00000497336.1_1_X:48316945-48325440:-|nuORF	ENST00000497336.1_1_X:48316945-48325440:-|nuORF	ENST00000497336.1_1_X:48316945-48325440:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	563.1678466796875	2	562.768257	1123.52196	-0.64716	-0.0003642	1.0361	0.00058309	0.38895	0.00021889	562.768873190662	85.017	1.4786	85.017	84.442	85.921	0					45	28	2	0	0	0	0.6806	1	31126	31126		14.838	0.25658	1	5637600			31119	12742	22518	22684	30402	30402					-0.034859307365422865
LLAEENQRL	9	Unmodified	_LLAEENQRL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R1	1	543.7005615234375	2	543.301113	1084.58767	-0.48007	-0.00026082	-0.06963	-3.783E-05	-0.5497	-0.00029865	543.301244014247	40.662	0.40418	40.662	40.509	40.913	0					12	7	3	0	0	0	0.14438	1	14004	14004		72.968	6.5113	1	3987000			31120	14788	22519	22685	30403	30403					0.048762265006644157
LLAEGITWV	9	Unmodified	_LLAEGITWV_					0	0	0		ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	MULTI-MSMS	A375_MHC_IP_R1	1	1002.568359375	1	1001.56661	1000.55933	0.68069	0.00068175	0.066026	6.613E-05	0.74671	0.00074788	1001.5667245108266	126.94	0.20062	126.94	126.81	127.01	0					5	3	2	0	0	0	0.034481	1	48553	48553		71.134	29.294	1	8343700			31121	5357	22520	22686	30404	30404					0.05907528591365008
LLAEKIYKI	9	Unmodified	_LLAEKIYKI_					0	0	0		ENSG00000100393|ENST00000263253|EP300;ENSG00000005339|ENST00000262367|CREBBP;nc|ENSG00000005339|Q92793-2|CREBBP	ENSG00000100393|ENST00000263253|EP300;ENSG00000005339|ENST00000262367|CREBBP	ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	A375_MHC_IP_R1	1	364.6336669921875	3	364.23387	1089.67978	0.1574	5.7329E-05	-0.41295	-0.00015041	-0.25556	-9.3082E-05	364.2333536447523	58.201	1.4231	58.201	57.72	59.143	0					49	27	4	0	0	0	0.11638	1	20892	20892		47.732	1.7097	1	6817700			31122	2172;890	22521	22687	30405	30405					0.13852936584976305
LLAEKIYKI	9	Unmodified	_LLAEKIYKI_					0	0	0		ENSG00000100393|ENST00000263253|EP300;ENSG00000005339|ENST00000262367|CREBBP;nc|ENSG00000005339|Q92793-2|CREBBP	ENSG00000100393|ENST00000263253|EP300;ENSG00000005339|ENST00000262367|CREBBP	ENSG00000100393|ENST00000263253|EP300	MULTI-SECPEP	A375_MHC_IP_R2	2	364.6333312988281	3	364.23387	1089.67978	-0.39573	-0.00014414	-0.54746	-0.0001994	-0.9432	-0.00034354	364.2334161099992	57.193	1.0185	57.943	57.662	58.681	0.75015					36	19	3	0	0	0	0.16237	1	21629	21629		55.235	16.62	1	9471200			31123	2172;890	22521	22687	30406	30406					0.13852936584976305
LLAEKVEQL	9	Unmodified	_LLAEKVEQL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-MSMS	A375_MHC_IP_R1	1	521.6834716796875	2	521.810782	1041.60701	-0.48502	-0.00025309	-0.54195	-0.00028279	-1.027	-0.00053588	521.8105089469236	59.556	0.45652	59.556	59.295	59.752	0					19	8	3	0	0	0	0.31062	1	21365	21365		29.841	0	1	3212400			31124	2529	22522	22688	30407	30407					0.0878718279154782
LLAEKVEQL	9	Unmodified	_LLAEKVEQL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-SECPEP	A375_MHC_IP_R2	2	522.2100830078125	2	521.810782	1041.60701	-0.94094	-0.00049099	-0.33544	-0.00017503	-1.2764	-0.00066603	521.810573493538	58.665	0.50666	59.414	59.187	59.693	0.74894					17	9	3	0	0	0	0.03341	1	22177	22177		83.429	3.8324	1	3218400			31125	2529	22522	22688	30408	30408					0.0878718279154782
LLAEKVEQL	9	Unmodified	_LLAEKVEQL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	521.810782	1041.60701	-0.48502	-0.00025309	-0.54195	-0.00028279	-1.027	-0.00053588	521.8105089469236	59.556	0.45652	59.556	59.295	59.752	0	0.070984	-0.00012047	NaN	83.429	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3212400			31126	2529	22522	22688							0.0878718279154782
LLAELLRGP	9	Unmodified	_LLAELLRGP_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-SECPEP	A375_MHC_IP_R2	2	491.67919921875	2	491.30821	980.601866	-0.39918	-0.00019612	-0.20252	-9.9498E-05	-0.6017	-0.00029562	491.3079279511565	101.01	1.4786	101.78	101.34	102.82	0.76428					50	28	3	0	0	0	0.47368	1	38378	38378		10.074	0	1	24395000			31127	4375	22523	22689	30409	30409					0.11078923719617251
LLAEPVPGI	9	Unmodified	_LLAEPVPGI_					0	0	0		ENSG00000177889|ENST00000318066|UBE2N;nc|ENSG00000276380|Q5JXB2|UBE2NL	ENSG00000177889|ENST00000318066|UBE2N	ENSG00000177889|ENST00000318066|UBE2N	MULTI-MSMS	A375_MHC_IP_R1	1	910.0372924804688	1	908.545145	907.537869	-0.10906	-9.9083E-05	0.084673	7.6929E-05	-0.024384	-2.2154E-05	908.54511452636	103.85	0.60995	103.85	103.52	104.13	0					26	11	3	0	0	0	0.2264	1	38091	38091		36.044	9.7029	1	8528100			31128	8116	22524	22690	30410	30410					0.0804014356266407
LLAEPVPGI	9	Unmodified	_LLAEPVPGI_					0	0	0		ENSG00000177889|ENST00000318066|UBE2N;nc|ENSG00000276380|Q5JXB2|UBE2NL	ENSG00000177889|ENST00000318066|UBE2N	ENSG00000177889|ENST00000318066|UBE2N	MULTI-MATCH	A375_MHC_IP_R2	2		1	908.545145	907.537869	-0.37291	-0.0003388	0.026971	2.4505E-05	-0.34593	-0.0003143	908.5452246948056	102.97	0.61076	103.73	103.48	104.09	0.76428	-0.06214	-2.0157E-05	NaN	36.044	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9058600			31129	8116	22524	22690							0.0804014356266407
LLAEQGYEV	9	Unmodified	_LLAEQGYEV_					0	0	0		ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	MULTI-MSMS	A375_MHC_IP_R1	1	511.6636657714844	2	511.263665	1020.51278	-0.24717	-0.00012637	0.37262	0.00019051	0.12545	6.4139E-05	511.26379084230564	72.02	0.60674	72.02	71.715	72.321	0					22	11	3	0	0	0	0.13797	1	26173	26173		43.858	5.7071	1	2426100			31130	1512	22525	22691	30411	30411					0.003340439694284214
LLAEQGYEV	9	Unmodified	_LLAEQGYEV_					0	0	0		ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	MULTI-MSMS	A375_MHC_IP_R2	2	511.6632385253906	2	511.263665	1020.51278	-0.99788	-0.00051018	0.71297	0.00036451	-0.28491	-0.00014566	511.26382778689447	71.397	0.75963	72.131	71.706	72.465	0.73421					25	14	2	0	0	0	0.047602	1	27030	27030		65.235	27.084	1	3208000			31131	1512	22525	22691	30412	30412					0.003340439694284214
LLAFFHCS	8	Unmodified	_LLAFFHCS_					0	0	0		L1ME1_dup14741|chr8:25510836-25512219:-|1.0165124893605175|0.2188578600898351|2.22|472.0|108|3|anti-sense	L1ME1_dup14741|chr8:25510836-25512219:-|1.0165124893605175|0.2188578600898351|2.22|472.0|108|3|anti-sense	L1ME1_dup14741|chr8:25510836-25512219:-|1.0165124893605175|0.2188578600898351|2.22|472.0|108|3|anti-sense	MSMS	A375_MHC_IP_R1	1	469.1610107421875	2	469.233656	936.452759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.769	1	59.769	59.269	60.269	0								0	0	0	0.16876	1	21505	21505		11.114	0.93107	1				31132	14261	22526	22692	30413	30413					-0.018009251748026145
LLAFLVHAV	9	Unmodified	_LLAFLVHAV_					0	0	0			REV__ENSG00000087301|ENST00000281741|TXNDC16	REV__ENSG00000087301|ENST00000281741|TXNDC16	MULTI-SECPEP	A375_MHC_IP_R1	1	491.45098876953125	2	491.807845	981.601138	-0.13804	-6.7887E-05	3.5309	0.0017365	3.3929	0.0016686	491.81047727283175	78.631	0.15076	78.631	78.556	78.707	0					4	2	2	0	0	0	0.64653	1	28689	28689		14.582	0	1	861180	+		31133	16871	22527	22693	30414	30414					0.10960129070565472
LLAFVRRL	8	Unmodified	_LLAFVRRL_					0	0	0			REV__ENST00000563032.1_1_16:89940075-89941239:+|nuORF	REV__ENST00000563032.1_1_16:89940075-89941239:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	494.2156066894531	2	494.326737	986.63892	-0.18195	-8.9943E-05	-0.10237	-5.0606E-05	-0.28432	-0.00014055	494.3266371036699	82.362	0.35696	82.362	82.214	82.571	0					9	6	2	0	0	0	0.96296	1	30178	30178		5.7604	0	1	587350	+		31134	26200	22528	22694	30415	30415					0.14506640056026754
LLAGGLGLV	9	Unmodified	_LLAGGLGLV_					0	0	0			REV__ENSG00000140955|ENST00000315906|ADAD2	REV__ENSG00000140955|ENST00000315906|ADAD2	MULTI-MSMS	A375_MHC_IP_R2	2	812.9232788085938	1	812.524016	811.516739	-0.67098	-0.00054519	0.94325	0.00076641	0.27227	0.00022123	812.5247702844727	115.01	0.56194	115.7	115.52	116.09	0.68999					15	10	2	0	0	0	0.042019	1	43415	43415		67.413	11.365	1	4872400	+		31135	19235	22529	22695	30416	30416					0.10344178253797054
LLAGGLGLV	9	Unmodified	_LLAGGLGLV_					0	0	0			REV__ENSG00000140955|ENST00000315906|ADAD2	REV__ENSG00000140955|ENST00000315906|ADAD2	MULTI-MATCH	A375_MHC_IP_R1	1		1	812.524016	811.516739	-0.050645	-4.1151E-05	-0.17389	-0.00014129	-0.22454	-0.00018244	812.5241778725881	116.01	0.45761	116.01	115.73	116.19	0	0.15461	-0.00024089	NaN	67.413	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4520800	+		31136	19235	22529	22695							0.10344178253797054
LLAGGLGLV	9	Unmodified	_LLAGGLGLV_					0	0	0			REV__ENSG00000140955|ENST00000315906|ADAD2	REV__ENSG00000140955|ENST00000315906|ADAD2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	812.524016	811.516739	-0.67098	-0.00054519	0.94325	0.00076641	0.27227	0.00022123	812.5247702844727	115.01	0.56194	115.7	115.52	116.09	0.68999	-0.15461	0.00066682	NaN	67.413	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4872400	+		31137	19235	22529	22695							0.10344178253797054
LLAGISEP	8	Unmodified	_LLAGISEP_					0	0	0			REV__ENSG00000137269|ENST00000370888|LRRC1	REV__ENSG00000137269|ENST00000370888|LRRC1	MSMS	A375_MHC_IP_R1	1	400.1759948730469	2	400.231636	798.448719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.896	1	76.896	76.396	77.396	0								0	0	0	0.16876	1	28038	28038		17.087	0	1		+		31138	18996	22530	22696	30417	30417					0.0414330860313612
LLAGLESP	8	Unmodified	_LLAGLESP_					0	0	0		ENSG00000145198|ENST00000691901|VWA5B2	ENSG00000145198|ENST00000691901|VWA5B2	ENSG00000145198|ENST00000691901|VWA5B2	MSMS	A375_MHC_IP_R2	2	400.17578125	2	400.231636	798.448719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.804	1	76.545	76.045	77.045	0.74052								0	0	0	0.16876	1	28775	28775		17.087	0	1				31139	5540	22531	22697	30418	30418					0.0414330860313612
LLAGPLAITL	10	Unmodified	_LLAGPLAITL_					0	0	0		ENST00000491948.5_1_22:24200072-24210829:+|nuORF;nc|ENSG00000133460|Q9BYW1-2|SLC2A11;ENST00000461809.5_1_22:24200186-24224826:+|nuORF;ENST00000405286.6_1_22:24199637-24224826:+|nuORF;nc|ENSG00000133460|Q9BYW1|SLC2A11;ENSG00000133460|ENST00000316185|SLC2A11;nc|ENSG00000133460|Q9BYW1-4|SLC2A11	ENST00000491948.5_1_22:24200072-24210829:+|nuORF	ENST00000491948.5_1_22:24200072-24210829:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	491.72088623046875	2	491.320786	980.627018	-0.31798	-0.00015623	0.183	8.9909E-05	-0.13499	-6.6322E-05	491.32074176770294	74.375	0.65876	74.375	74.146	74.805	0					19	12	2	0	0	0	0.48072	1	27099	27099		37.974	0	1	4316100			31140	4512	22532	22698	30419	30419					0.1359297852217196
LLAHWVLV	8	Unmodified	_LLAHWVLV_					0	0	0			REV__ENSG00000156587|ENST00000287156|UBE2L6	REV__ENSG00000156587|ENST00000287156|UBE2L6	MULTI-SECPEP	A375_MHC_IP_R2	2	476.192138671875	2	475.794738	949.574923	-0.8514	-0.00040509	-3.187	-0.0015164	-4.0384	-0.0019215	475.79267114286466	60.221	0.71222	60.967	60.551	61.263	0.74562					18	13	2	0	0	0	0.85371	1	22828	22828		32.454	17.872	1	1836500	+		31141	19990	22533	22699	30420	30420					0.09811859899082265
LLAIAIRKW	9	Unmodified	_LLAIAIRKW_					0	0	0			REV__DPP6|p.G95R|1|0.3|ENSG00000130226|chr7:154446253-154446253|G/A|missense_variant	REV__DPP6|p.G95R|1|0.3|ENSG00000130226|chr7:154446253-154446253|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	361.5948181152344	3	361.906088	1082.69644	-0.67592	-0.00024462	1.3702	0.00049589	0.69431	0.00025127	361.9063345751885	37.274	0.25428	38.045	37.917	38.171	0.7709					9	4	3	0	0	0	0.81039	1	13609	13609		0.26902	0	1	1290100	+		31142	16032	22534	22700	30421	30421					0.1583948226159464
LLAIISHVTI	10	Unmodified	_LLAIISHVTI_					0	0	0		DOCK11|p.P1007S|1|0.24|ENSG00000147251|chrX:118610341-118610341|C/T|missense_variant	DOCK11|p.P1007S|1|0.24|ENSG00000147251|chrX:118610341-118610341|C/T|missense_variant	DOCK11|p.P1007S|1|0.24|ENSG00000147251|chrX:118610341-118610341|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	540.6862182617188	2	540.344792	1078.67503	-0.86894	-0.00046953	0.12333	6.6639E-05	-0.74561	-0.00040289	540.3447881028485	82.529	0.50539	83.272	82.992	83.497	0.74293					13	9	2	0	0	0	0.78945	1	31354	31354		25.399	0	1	1736200			31143	780	22535	22701	30422	30422					0.13884052442244865
LLAKLCVLQN	10	Unmodified	_LLAKLCVLQN_					0	0	0		ENST00000566070.1_1_16:29228847-29229760:-|nuORF	ENST00000566070.1_1_16:29228847-29229760:-|nuORF	ENST00000566070.1_1_16:29228847-29229760:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	557.1900634765625	2	557.836277	1113.658	-0.78228	-0.00043639	0.36	0.00020082	-0.42228	-0.00023556	557.8367788630216	72.881	0.40651	73.616	73.379	73.785	0.73541					10	7	2	0	0	0	0.85226	1	27621	27621		14.838	0	1	1004200			31144	13558	22536	22702	30423	30423					0.10571808564782259
LLAKQLAV	8	Unmodified	_LLAKQLAV_					0	0	0			REV__ENST00000508360.5_1_4:89653076-89671014:-|nuORF	REV__ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	428.68670654296875	2	428.286746	854.558939	-0.13448	-5.7596E-05	0.18924	8.1049E-05	0.054762	2.3454E-05	428.2867913212196	63.949	0.55906	63.949	63.632	64.191	0					16	10	2	0	0	0	0.28913	1	23130	23130		59.795	15.388	1	1941800	+		31145	19106	22537	22703	30424	30424					0.12584153662180597
LLAKQLAV	8	Unmodified	_LLAKQLAV_					0	0	0			REV__ENST00000508360.5_1_4:89653076-89671014:-|nuORF	REV__ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	428.6866455078125	2	428.286746	854.558939	-0.17799	-7.6232E-05	0.34146	0.00014624	0.16347	7.0011E-05	428.28675300735915	62.816	0.50461	63.558	63.333	63.838	0.74263					14	9	2	0	0	0	0.6817	1	23842	23842		40.449	2.2974	1	2591900	+		31146	19106	22537	22703	30425	30425					0.12584153662180597
LLAKQLAV	8	Unmodified	_LLAKQLAV_					0	0	0			REV__ENST00000508360.5_1_4:89653076-89671014:-|nuORF	REV__ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	428.286746	854.558939	-0.17799	-7.6232E-05	0.34146	0.00014624	0.16347	7.0011E-05	428.28675300735915	62.816	0.50461	63.558	63.333	63.838	0.74263	-0.19516	8.0894E-05	NaN	59.795	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2591900	+		31147	19106	22537	22703							0.12584153662180597
LLALHSAA	8	Unmodified	_LLALHSAA_					0	0	0		ENSG00000101986|ENST00000218104|ABCD1	ENSG00000101986|ENST00000218104|ABCD1	ENSG00000101986|ENST00000218104|ABCD1	MULTI-SECPEP	A375_MHC_IP_R2	2	397.58770751953125	2	398.239796	794.465038	-0.081087	-3.2292E-05	0.18539	7.383E-05	0.1043	4.1538E-05	398.2397678680658	27.711	0.45537	28.389	28.2	28.655	0.67857					13	8	2	0	0	0	0.86765	1	9557	9557		24.674	0	1	3171100			31148	2344	22538	22704	30426	30426					0.05958434559897796
LLALIALVKK	10	Unmodified	_LLALIALVKK_					0	0	0			REV__tr|U7SV48|U7SV48_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01127PE=4SV=1	REV__tr|U7SV48|U7SV48_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01127PE=4SV=1	MSMS	A375_MHC_IP_R1	1	541.4531860351562	2	541.389003	1080.76345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.119	1	22.119	21.619	22.619	0								0	0	0	0.15642	1	5903	5903		0	0	1		+		31149	28582	22539	22705	30427	30427					0.22630092752660858
LLALIALVKK	10	Unmodified	_LLALIALVKK_					0	0	0			REV__tr|U7SV48|U7SV48_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01127PE=4SV=1	REV__tr|U7SV48|U7SV48_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01127PE=4SV=1	MSMS	A375_MHC_IP_R1	1	541.45361328125	2	541.389003	1080.76345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.755	1	22.755	22.255	23.255	0								0	0	0	0.15642	1	6143	6143		0	0	1		+		31150	28582	22539	22705	30428	30428					0.22630092752660858
LLALIALVKK	10	Unmodified	_LLALIALVKK_					0	0	0			REV__tr|U7SV48|U7SV48_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01127PE=4SV=1	REV__tr|U7SV48|U7SV48_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01127PE=4SV=1	MSMS	A375_MHC_IP_R2	2	541.4534301757812	2	541.389003	1080.76345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.773	1	23.403	22.903	23.903	0.63014								0	0	0	0.15642	1	7253	7253		0	0	1		+		31151	28582	22539	22705	30429	30429					0.22630092752660858
LLALPSGDDW	10	Unmodified	_LLALPSGDDW_					0	0	0			REV__ENSG00000141499|ENST00000396463|WRAP53	REV__ENSG00000141499|ENST00000396463|WRAP53	MULTI-MSMS	A375_MHC_IP_R2	2	543.686279296875	2	543.776939	1085.53933	-0.83009	-0.00045138	-0.029933	-1.6277E-05	-0.86002	-0.00046766	543.776977430104	64.898	0.55954	65.636	65.308	65.867	0.73811					29	10	4	0	0	0	0.66712	1	24500	24500		15.847	3.3156	1	5863200	+		31152	19272	22540	22706	30430	30430					-2.2671392343909247E-05
LLALYYIFSS	10	Unmodified	_LLALYYIFSS_					0	0	0		ENST00000427755.2_1_11:33037501-33047701:+|nuORF	ENST00000427755.2_1_11:33037501-33047701:+|nuORF	ENST00000427755.2_1_11:33037501-33047701:+|nuORF	MSMS	A375_MHC_IP_R2	2	397.280029296875	3	397.221631	1188.64306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.951	1	37.722	37.222	38.222	0.7709								0	0	0	0.15222	1	13499	13499		13.615	3.2996	1				31153	11827	22541	22707	30431	30431					0.05628639968404059
LLANWDASVSL	11	Unmodified	_LLANWDASVSL_					0	0	0			REV__nc|ENSG00000185684|Q6ZTU2-4|EP400P1	REV__nc|ENSG00000185684|Q6ZTU2-4|EP400P1	MULTI-MSMS	A375_MHC_IP_R2	2	397.2802734375	3	396.880156	1187.61864	-0.24463	-9.709E-05	0.36007	0.00014291	0.11544	4.5816E-05	396.8802031831136	35.987	0.51095	36.751	36.537	37.048	0.76338					21	9	4	0	0	0	0.48838	1	13093	13093		21.241	3.3782	1	5475000	+		31154	27416	22542	22708	30432	30432					0.03233379814901127
LLANWDASVSL	11	Unmodified	_LLANWDASVSL_					0	0	0			REV__nc|ENSG00000185684|Q6ZTU2-4|EP400P1	REV__nc|ENSG00000185684|Q6ZTU2-4|EP400P1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	396.880156	1187.61864	-0.20642	-8.1923E-05	0.88096	0.00034963	0.67454	0.00026771	396.8804365001986	36.971	0.55568	36.971	36.745	37.301	0	0.11004	0.0003349	NaN	21.241	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4327000	+		31155	27416	22542	22708							0.03233379814901127
LLANWDASVSL	11	Unmodified	_LLANWDASVSL_					0	0	0			REV__nc|ENSG00000185684|Q6ZTU2-4|EP400P1	REV__nc|ENSG00000185684|Q6ZTU2-4|EP400P1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	396.880156	1187.61864	-0.24463	-9.709E-05	0.36007	0.00014291	0.11544	4.5816E-05	396.8802031831136	35.987	0.51095	36.751	36.537	37.048	0.76338	-0.11004	-0.00028529	NaN	21.241	21	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5475000	+		31156	27416	22542	22708							0.03233379814901127
LLAPDRLNL	9	Unmodified	_LLAPDRLNL_					0	0	0			REV__ENSG00000179044|ENST00000314586|EXOC3L1	REV__ENSG00000179044|ENST00000314586|EXOC3L1	MULTI-SECPEP	A375_MHC_IP_R2	2	513.4691162109375	2	512.811116	1023.60768	-0.77551	-0.00039769	-1.0648	-0.00054604	-1.8403	-0.00094373	513.3116118937878	75.395	0.71485	76.136	75.925	76.64	0.74052					28	13	3	0	0	0	0.58271	1	28701	28701		20.454	5.6154	1	1628700	+		31157	21538	22543	22709	30433	30433					0.09682022231265819
LLAPIETR	8	Unmodified	_LLAPIETR_					0	0	0			REV__nc|ENSG00000053702|Q9BQI9-2|NRIP2	REV__nc|ENSG00000053702|Q9BQI9-2|NRIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	457.1793212890625	2	456.779285	911.544017	0.067697	3.0923E-05	-0.36923	-0.00016866	-0.30154	-0.00013774	456.77911167557613	49.639	0.40583	49.639	49.387	49.793	0					13	7	2	0	0	0	0.87643	1	17564	17564		32.305	0	1	1893700	+		31158	16398	22544	22710	30434	30434					0.08470661794171974
LLAPKLNEA	9	Unmodified	_LLAPKLNEA_					0	0	0		nc|ENSG00000142186|Q96KG9-5|SCYL1;nc|ENSG00000142186|Q96KG9-3|SCYL1;nc|ENSG00000142186|Q96KG9-4|SCYL1;nc|ENSG00000142186|Q96KG9-6|SCYL1;nc|ENSG00000142186|Q96KG9-2|SCYL1;ENSG00000142186|ENST00000270176|SCYL1	nc|ENSG00000142186|Q96KG9-5|SCYL1	nc|ENSG00000142186|Q96KG9-5|SCYL1	MULTI-SECPEP	A375_MHC_IP_R1	1	485.19232177734375	2	484.792392	967.570232	0.047212	2.2888E-05	-0.1352	-6.5542E-05	-0.087983	-4.2654E-05	484.792217937179	49.569	0.56059	49.569	49.336	49.896	0					21	10	3	0	0	0	0.11711	1	17535	17535		60.074	13.153	1	4082100			31159	5292	22545	22711	30435	30435					0.08514930965657186
LLAPKLNEA	9	Unmodified	_LLAPKLNEA_					0	0	0		nc|ENSG00000142186|Q96KG9-5|SCYL1;nc|ENSG00000142186|Q96KG9-3|SCYL1;nc|ENSG00000142186|Q96KG9-4|SCYL1;nc|ENSG00000142186|Q96KG9-6|SCYL1;nc|ENSG00000142186|Q96KG9-2|SCYL1;ENSG00000142186|ENST00000270176|SCYL1	nc|ENSG00000142186|Q96KG9-5|SCYL1	nc|ENSG00000142186|Q96KG9-5|SCYL1	MULTI-SECPEP	A375_MHC_IP_R2	2	485.1919250488281	2	484.792392	967.570232	-0.67267	-0.0003261	0.013893	6.7353E-06	-0.65877	-0.00031937	484.79232366652417	48.735	0.61139	49.493	49.231	49.843	0.75737					20	11	3	0	0	0	0.074405	1	18285	18285		61.602	0	1	4428600			31160	5292	22545	22711	30436	30436					0.08514930965657186
LLAPRPVAV	9	Unmodified	_LLAPRPVAV_					0	0	0		ENSG00000129757|ENST00000440480|CDKN1C;nc|ENSG00000129757|P49918|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	MULTI-SECPEP	A375_MHC_IP_R1	1	468.7049865722656	2	468.30547	934.596387	-0.28161	-0.00013188	0.097404	4.5615E-05	-0.18421	-8.6265E-05	468.3054430330996	59.722	0.66111	59.722	59.448	60.109	0					31	12	3	0	0	0	0.07754	1	21455	21455		74.423	26.077	1	18494000			31161	4211	22546	22712	30437	30437					0.12647244927791235
LLAPRPVAV	9	Unmodified	_LLAPRPVAV_					0	0	0		ENSG00000129757|ENST00000440480|CDKN1C;nc|ENSG00000129757|P49918|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	MULTI-SECPEP	A375_MHC_IP_R2	2	468.705078125	2	468.30547	934.596387	-0.98127	-0.00045953	0.025134	1.177E-05	-0.95614	-0.00044776	468.3054037892276	58.767	0.81218	59.514	59.235	60.047	0.74714					34	15	3	0	0	0	0.050875	1	22205	22205		85.357	27.885	1	16907000			31162	4211	22546	22712	30438	30438					0.12647244927791235
LLAQVQAW	8	Unmodified	_LLAQVQAW_					0	0	0			REV__IRGQ|p.L450Pfs*101|1|0.27|ENSG00000167378|chr19:43592548-43592551|GAGC/-|frameshift_variant	REV__IRGQ|p.L450Pfs*101|1|0.27|ENSG00000167378|chr19:43592548-43592551|GAGC/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	464.7029113769531	2	464.766178	927.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.978	1	69.978	69.478	70.478	0								0	0	0	0.16876	1	25401	25401		14.582	0	1		+		31163	20754	22547	22713	30439	30439					0.05114392622704145
LLARQVPGL	9	Unmodified	_LLARQVPGL_					0	0	0			REV__ENST00000543035.5_2_12:3068990-3120181:+|nuORF	REV__ENST00000543035.5_2_12:3068990-3120181:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	484.2078857421875	2	483.808377	965.6022	-0.50985	-0.00024667	-0.016028	-7.7544E-06	-0.52588	-0.00025443	483.8083635325278	84.788	0.4593	84.788	84.596	85.056	0					15	8	2	0	0	0	0.52144	1	31089	31089		11.64	0	1	1771200	+		31164	25972	22548	22714	30440	30440					0.11802343439467222
LLARQVPGL	9	Unmodified	_LLARQVPGL_					0	0	0			REV__ENST00000543035.5_2_12:3068990-3120181:+|nuORF	REV__ENST00000543035.5_2_12:3068990-3120181:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	484.2080993652344	2	483.808377	965.6022	-0.53087	-0.00025684	0.1606	7.7701E-05	-0.37027	-0.00017914	483.80842122854693	83.773	0.51225	84.512	84.254	84.766	0.73962					19	9	3	0	0	0	0.43707	1	31855	31855		21.747	0	1	2255700	+		31165	25972	22548	22714	30441	30441					0.11802343439467222
LLARRLLLL	9	Unmodified	_LLARRLLLL_					0	0	0		ENST00000264036.5_1_11:119185954-119187791:-|nuORF	ENST00000264036.5_1_11:119185954-119187791:-|nuORF	ENST00000264036.5_1_11:119185954-119187791:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	541.2847290039062	2	540.884419	1079.75428	-0.60878	-0.00032928	0.52856	0.00028589	-0.080221	-4.339E-05	540.884710589053	118.71	0.50871	118.71	118.52	119.03	0					15	9	3	0	0	0	0.021919	1	43785	43785		81.864	0.25097	1	14259000			31166	10328	22549	22715	30442	30442					0.21759744187033903
LLARRLLLL	9	Unmodified	_LLARRLLLL_					0	0	0		ENST00000264036.5_1_11:119185954-119187791:-|nuORF	ENST00000264036.5_1_11:119185954-119187791:-|nuORF	ENST00000264036.5_1_11:119185954-119187791:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	541.2854614257812	2	540.884419	1079.75428	-0.71094	-0.00038454	1.6933	0.00091588	0.98237	0.00053135	540.8853846924654	117.3	0.50491	117.96	117.68	118.19	0.65962					15	9	2	0	0	0	0.12259	1	44401	44401		53.576	0	1	17120000			31167	10328	22549	22715	30443	30443					0.21759744187033903
LLASEVPQL	9	Unmodified	_LLASEVPQL_					0	0	0		ENSG00000106009|ENST00000340611|BRAT1;ENST00000467558.5_1_7:2578584-2579570:-|nuORF;ENST00000469750.5_1_7:2577705-2579570:-|nuORF	ENSG00000106009|ENST00000340611|BRAT1	ENSG00000106009|ENST00000340611|BRAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	485.68414306640625	2	485.2844	968.554247	-0.26952	-0.00013079	-0.11813	-5.7325E-05	-0.38764	-0.00018812	485.28426650347023	99.293	0.60812	99.293	99.015	99.624	0					25	11	3	0	0	0	0.040439	1	36451	36451		92.822	27.587	1	4165600			31168	2658	22550	22716	30444	30444					0.06871224728752168
LLASEVPQL	9	Unmodified	_LLASEVPQL_					0	0	0		ENSG00000106009|ENST00000340611|BRAT1;ENST00000467558.5_1_7:2578584-2579570:-|nuORF;ENST00000469750.5_1_7:2577705-2579570:-|nuORF	ENSG00000106009|ENST00000340611|BRAT1	ENSG00000106009|ENST00000340611|BRAT1	MULTI-MSMS	A375_MHC_IP_R2	2	970.3131103515625	1	969.561524	968.554247	-0.02347	-2.2755E-05	-0.12722	-0.00012335	-0.15069	-0.0001461	969.5612814903318	98.473	0.50973	99.232	98.945	99.454	0.75977					20	9	3	0	0	0	0.0094788	1	37347	37347		107.19	21.915	1	6025400			31169	2658	22550	22716	30445	30445					0.06871224728752168
LLASEVPQL	9	Unmodified	_LLASEVPQL_					0	0	0		ENSG00000106009|ENST00000340611|BRAT1;ENST00000467558.5_1_7:2578584-2579570:-|nuORF;ENST00000469750.5_1_7:2577705-2579570:-|nuORF	ENSG00000106009|ENST00000340611|BRAT1	ENSG00000106009|ENST00000340611|BRAT1	MULTI-SECPEP	A375_MHC_IP_R2	2	485.6839599609375	2	485.2844	968.554247	-0.56178	-0.00027263	0.22818	0.00011073	-0.3336	-0.00016189	485.2844731603297	98.478	0.66109	99.238	98.895	99.556	0.75977					26	12	3	0	0	0	0.021422	1	37338	37338		108	11.712	1	5388400			31170	2658	22550	22716	30446	30446					0.06871224728752168
LLASEVPQL	9	Unmodified	_LLASEVPQL_					0	0	0		ENSG00000106009|ENST00000340611|BRAT1;ENST00000467558.5_1_7:2578584-2579570:-|nuORF;ENST00000469750.5_1_7:2577705-2579570:-|nuORF	ENSG00000106009|ENST00000340611|BRAT1	ENSG00000106009|ENST00000340611|BRAT1	MULTI-MATCH	A375_MHC_IP_R1	1		1	969.561524	968.554247	0.10751	0.00010424	-0.083234	-8.0701E-05	0.024277	2.3538E-05	969.5613020714918	99.293	0.60963	99.293	98.964	99.574	0	0.030384	1.2261E-05	NaN	107.19	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7742500			31171	2658	22550	22716							0.06871224728752168
LLASFVFLL	9	Unmodified	_LLASFVFLL_					0	0	0			REV__nc|ENSG00000145888|P23415|GLRA1;REV__ENSG00000145451|ENST00000274093|GLRA3	REV__ENSG00000145451|ENST00000274093|GLRA3	MULTI-SECPEP	A375_MHC_IP_R1	1	512.2168579101562	2	511.817879	1021.6212	-0.22834	-0.00011687	-1.7706	-0.00090624	-1.999	-0.0010231	511.81705587454303	126.21	0.25246	126.21	126.1	126.36	0					7	4	2	0	0	0	0.3607	1	48207	48207		34.102	3.8776	1	5349300	+		31172	19475;19500	22551	22717	30447	30447					0.11125880010524725
LLASGLARLW	10	Unmodified	_LLASGLARLW_					0	0	0			REV__ENST00000552395.5_1_12:54854238-54867343:-|nuORF	REV__ENST00000552395.5_1_12:54854238-54867343:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	550.73486328125	2	550.334759	1098.65496	-0.4112	-0.0002263	0.5443	0.00029955	0.1331	7.325E-05	550.3349540011725	105.82	0.45694	105.82	105.6	106.06	0					17	8	3	0	0	0	0.70312	1	38859	38859		17.113	1.2657	1	2162000	+		31173	26054	22552	22718	30448	30448					0.10958301502250833
LLASGLARLW	10	Unmodified	_LLASGLARLW_					0	0	0			REV__ENST00000552395.5_1_12:54854238-54867343:-|nuORF	REV__ENST00000552395.5_1_12:54854238-54867343:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	550.734375	2	550.334759	1098.65496	-0.71717	-0.00039468	-0.27462	-0.00015113	-0.99179	-0.00054581	550.334634262709	104.81	0.50778	105.57	105.31	105.82	0.76308					15	9	2	0	0	0	0.70312	1	39661	39661		17.113	1.2657	1	2335000	+		31174	26054	22552	22718	30449	30449					0.10958301502250833
LLASLHTLLG	10	Unmodified	_LLASLHTLLG_					0	0	0		ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1397094726562	2	519.321317	1036.62808	-0.85918	-0.00044619	-0.13965	-7.2525E-05	-0.99884	-0.00051872	519.3212457400778	54.7	0.56009	55.45	55.169	55.729	0.75075					17	10	3	0	0	0	0.76414	1	20637	20637		14.838	0	1	1890600			31175	5243	22553	22719	30450	30450					0.11123192891068356
LLASLHTLLG	10	Unmodified	_LLASLHTLLG_					0	0	0		ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MULTI-MATCH	A375_MHC_IP_R1	1		2	519.321317	1036.62808	-0.46627	-0.00024214	0.1563	8.1168E-05	-0.30998	-0.00016098	519.3211483538138	55.683	0.40915	55.683	55.482	55.891	0	0.11636	0.00022229	NaN	14.838	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1571600			31176	5243	22553	22719							0.11123192891068356
LLATAILGA	9	Unmodified	_LLATAILGA_					0	0	0		ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	MULTI-MSMS	A375_MHC_IP_R1	1	422.17095947265625	2	421.770929	841.527304	0.23794	0.00010036	0.0088684	3.7404E-06	0.24681	0.0001041	421.77080207860234	71.805	0.80558	71.805	71.516	72.321	0					32	15	3	0	0	0	0.0096264	1	26087	26087		109.63	7.9073	1	6339700			31177	5636	22554	22720	30451	30451					0.10020160908231901
LLATAILGA	9	Unmodified	_LLATAILGA_					0	0	0		ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	421.770929	841.527304	-0.21452	-9.0478E-05	-0.023955	-1.0103E-05	-0.23847	-0.00010058	421.77081850010194	70.915	0.75922	71.65	71.251	72.01	0.73421	-0.077875	-1.276E-05	NaN	109.63	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7927600			31178	5636	22554	22720							0.10020160908231901
LLATGLDGSYL	11	Unmodified	_LLATGLDGSYL_					0	0	0		nc|ENSG00000183918|O60880-4|SH2D1A;ENSG00000183918|ENST00000371139|SH2D1A;nc|ENSG00000183918|O60880-3|SH2D1A;ENST00000491950.5_1_X:123480492-123504062:+|nuORF;nc|ENSG00000183918|O60880-6|SH2D1A;ENST00000494073.5_1_X:123480492-123504129:+|nuORF;nc|ENSG00000183918|O60880-2|SH2D1A;nc|ENSG00000183918|O60880-5|SH2D1A	nc|ENSG00000183918|O60880-4|SH2D1A	nc|ENSG00000183918|O60880-4|SH2D1A	MULTI-SECPEP	A375_MHC_IP_R2	2	561.1290893554688	2	561.805697	1121.59684	-0.48368	-0.00027174	-0.48125	-0.00027037	-0.96493	-0.0005421	561.8053208783094	69.172	1.3205	69.907	69.575	70.895	0.73511					58	25	4	0	0	0	0.79632	1	26169	26169		30.637	10.183	1	11184000			31179	8542	22555	22721	30452	30452					0.04090575066334168
LLATHSPFSI	10	Unmodified	_LLATHSPFSI_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	543.7037963867188	2	543.303124	1084.5917	-0.50582	-0.00027481	0.19591	0.00010644	-0.30991	-0.00016837	543.3032021329656	104.96	0.70996	104.96	104.69	105.4	0					36	13	4	0	0	0	0.092743	1	38510	38510		71.134	0	1	7465900			31180	8235	22556	22722	30453	30453					0.05278315994382865
LLATLFYLY	9	Unmodified	_LLATLFYLY_					0	0	0			REV__ENSG00000145860|ENST00000424310|RNF145	REV__ENSG00000145860|ENST00000424310|RNF145	MULTI-SECPEP	A375_MHC_IP_R1	1	559.15673828125	2	558.820618	1115.62668	-0.65175	-0.00036421	-0.26135	-0.00014605	-0.9131	-0.00051026	558.8204671402018	46.795	0.66012	46.795	46.395	47.055	0					19	12	2	0	0	0	0.67221	1	16479	16479		19.439	0	1	1286900	+		31181	19497	22557	22723	30454	30454					0.07349558802343381
LLAVEDPEKRV	11	Unmodified	_LLAVEDPEKRV_					0	0	0		ENSG00000157353|ENST00000288078|FCSK;nc|ENSG00000157353|Q8N0W3-2|FCSK;ENST00000576107.5_1_16:70497084-70500232:+|nuORF;ENST00000571487.5_1_16:70497084-70500964:+|nuORF;ENST00000464499.5_1_16:70497084-70500964:+|nuORF	ENSG00000157353|ENST00000288078|FCSK	ENSG00000157353|ENST00000288078|FCSK	MULTI-MSMS	A375_MHC_IP_R1	1	423.97833251953125	3	423.578477	1267.7136	-0.15741	-6.6674E-05	0.010324	4.3729E-06	-0.14708	-6.2301E-05	423.57845722395393	25.518	0.45877	25.518	25.357	25.816	0					13	8	2	0	0	0	0.73239	1	7481	7481		6.6235	6.6235	1	4977600			31182	6239	22558	22724	30455	30455					0.09045313286083001
LLAVYKTV	8	Unmodified	_LLAVYKTV_					0	0	0		ENSG00000125744|ENST00000245923|RTN2	ENSG00000125744|ENST00000245923|RTN2	ENSG00000125744|ENST00000245923|RTN2	MULTI-SECPEP	A375_MHC_IP_R2	2	453.18438720703125	2	453.786579	905.558604	-0.6264	-0.00028425	-0.67204	-0.00030496	-1.2984	-0.00058922	453.78624818573104	59.476	0.30197	60.223	60.098	60.4	0.74714					7	5	2	0	0	0	0.94479	1	22544	22544		4.756	0	1	934100			31183	3985	22559	22725	30456	30456					0.1020473394231658
LLAWEDPTF	9	Unmodified	_LLAWEDPTF_					0	0	0			REV__nc|ENSG00000214189|Q6ZQV5-2|ZNF788P	REV__nc|ENSG00000214189|Q6ZQV5-2|ZNF788P	MSMS	A375_MHC_IP_R1	1	546.247314453125	2	546.274032	1090.53351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.297	1	58.297	57.797	58.797	0								0	0	0	0.14905	1	20938	20938		23.148	5.0134	1		+		31184	27489	22560	22726	30457	30457					-0.008133656509244247
LLAWEERTF	9	Unmodified	_LLAWEERTF_					0	0	0			REV__ENSG00000180855|ENST00000301547|ZNF443	REV__ENSG00000180855|ENST00000301547|ZNF443	MULTI-MSMS	A375_MHC_IP_R1	1	582.6385498046875	2	582.806031	1163.59751	-0.14416	-8.402E-05	-0.072001	-4.1962E-05	-0.21617	-0.00012598	582.8059058848806	105.23	0.65884	105.23	104.84	105.5	0					36	12	4	0	0	0	0.58047	1	38714	38714		15.847	0	1	9721700	+		31185	21624	22561	22727	30458	30458					0.022254145060287556
LLAWEERTF	9	Unmodified	_LLAWEERTF_					0	0	0			REV__ENSG00000180855|ENST00000301547|ZNF443	REV__ENSG00000180855|ENST00000301547|ZNF443	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	582.806031	1163.59751	-0.34776	-0.00020268	-0.37519	-0.00021866	-0.72296	-0.00042134	582.8057961706834	104.24	0.61089	105.01	104.7	105.31	0.76308	-0.11129	-0.00016315	NaN	15.847	33	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10484000	+		31186	21624	22561	22727							0.022254145060287556
LLAWLPRYFLW	11	Unmodified	_LLAWLPRYFLW_					0	0	0			REV__ENSG00000170876|ENST00000306077|TMEM43	REV__ENSG00000170876|ENST00000306077|TMEM43	MULTI-SECPEP	A375_MHC_IP_R2	2	493.6726989746094	3	493.283336	1476.82818	-0.58653	-0.00028932	-3.8564	-0.0019023	-4.4429	-0.0021916	493.2822111518744	81.512	0.15103	82.255	82.128	82.279	0.74293					4	2	2	0	0	0	0.99999	1	30935	30935		0.50596	0.051438	1	449950	+		31187	21027	22562	22728	30459	30459					0.10883667558687193
LLAWWGQL	8	Unmodified	_LLAWWGQL_					0	0	0			REV__ENST00000535597.1_11:69063371-69063575:+|nuORF	REV__ENST00000535597.1_11:69063371-69063575:+|nuORF	MSMS	A375_MHC_IP_R1	1	493.6995849609375	2	493.776545	985.538538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.778	1	82.778	82.278	83.278	0								0	0	0	0.16876	1	30277	30277		17.087	1.2394	1		+		31188	25904	22563	22729	30460	30460					0.045189830023673494
LLAYLSPA	8	Unmodified	_LLAYLSPA_					0	0	0			REV__GIMAP8|p.H95Y|1|0.44|ENSG00000171115|chr7:150466981-150466981|C/T|missense_variant	REV__GIMAP8|p.H95Y|1|0.44|ENSG00000171115|chr7:150466981-150466981|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	424.2911682128906	2	424.249829	846.485105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.353	1	40.353	39.853	40.853	0								0	0	0	0.16876	1	13859	13859		14.582	0	1		+		31189	26682	22564	22730	30461	30461					0.05572185499852367
LLCAPLAGR	9	Unmodified	_LLCAPLAGR_					0	0	0			REV__ENST00000441095.2_1_21:47018070-47018571:+|nuORF	REV__ENST00000441095.2_1_21:47018070-47018571:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	914.31982421875	1	913.528784	912.521507	0.3536	0.00032303	-0.32036	-0.00029265	0.033249	3.0374E-05	913.5300723268516	114.6	0.30717	114.6	114.41	114.72	0					7	5	2	0	0	0	0.68216	1	42022	42022		8.5933	2.8329	1	1612700	+		31190	24804	22565	22731	30462	30462					0.06174739124912776
LLCAVIHTSM	10	Unmodified	_LLCAVIHTSM_					0	0	0			REV__ENSG00000119927|ENST00000348367|GPAM	REV__ENSG00000119927|ENST00000348367|GPAM	MULTI-SECPEP	A375_MHC_IP_R2	2	544.1455688476562	2	544.285563	1086.55657	-0.76441	-0.00041606	2.1184	0.001153	1.354	0.00073695	544.2869438194333	63.415	1.4197	64.156	63.178	64.597	0.74022					37	27	2	0	0	0	0.83086	1	23953	23953		15.847	0	1	7209800	+		31191	18104	22566	22732	30463	30463					0.016756138705659396
LLCCCIGKDDH	11	Unmodified	_LLCCCIGKDDH_					0	0	0		nc|ENSG00000164535|Q8NCG7-3|DAGLB;ENSG00000164535|ENST00000297056|DAGLB	nc|ENSG00000164535|Q8NCG7-3|DAGLB	nc|ENSG00000164535|Q8NCG7-3|DAGLB	MULTI-MSMS	A375_MHC_IP_R2	2	610.5831909179688	2	610.267044	1218.51953	-0.69016	-0.00042118	-0.38723	-0.00023631	-1.0774	-0.00065749	610.2667867543587	62.112	0.65942	62.854	62.521	63.18	0.74263					25	12	3	0	0	0	0.73332	1	23437	23437		5.7319	5.7319	1	3075400			31192	6848	22567	22733	30464	30464					-0.08098425737512116
LLCEAQRGSP	10	Unmodified	_LLCEAQRGSP_					0	0	0		FCRL6|p.P236S|2|0.29|ENSG00000181036|chr1:159809503-159809503|C/T|missense_variant;FCRL6|p.P236L|1|0.17|ENSG00000181036|chr1:159809504-159809504|C/T|missense_variant;nc|ENSG00000181036|Q6DN72-4|FCRL6;nc|ENSG00000181036|Q6DN72-3|FCRL6;nc|ENSG00000181036|Q6DN72-2|FCRL6;ENSG00000181036|ENST00000368106|FCRL6	FCRL6|p.P236S|2|0.29|ENSG00000181036|chr1:159809503-159809503|C/T|missense_variant	FCRL6|p.P236S|2|0.29|ENSG00000181036|chr1:159809503-159809503|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	358.5845642089844	3	358.518453	1072.53353	-0.060798	-2.1797E-05	0.93386	0.00033481	0.87306	0.00031301	358.5189161005893	135.8	0.25946	135.91	135.84	136.1	0.11134					5	4	2	0	0	0	0.71866	1	53394	53394		1.9064	0.45126	1	1177200			31193	8331	22568	22734	30465	30465					0.00016311077456521161
LLCEEDAL	8	Unmodified	_LLCEEDAL_					0	0	0		ENST00000414797.5_1_7:79083283-79084263:+|nuORF	ENST00000414797.5_1_7:79083283-79084263:+|nuORF	ENST00000414797.5_1_7:79083283-79084263:+|nuORF	MSMS	A375_MHC_IP_R1	1	453.160888671875	2	453.217869	904.421184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.973	1	81.973	81.473	82.473	0								0	0	0	0.16876	1	29964	29964		11.114	0.93107	1				31194	11671	22569	22735	30466	30466					-0.034849627194148525
LLCEKYSTVVR	11	Unmodified	_LLCEKYSTVVR_					0	0	0		nc|ENSG00000171121|Q9NPA1-4|KCNMB3;ENSG00000171121|ENST00000392685|KCNMB3;nc|ENSG00000171121|Q9NPA1-2|KCNMB3;nc|ENSG00000171121|Q9NPA1|KCNMB3	nc|ENSG00000171121|Q9NPA1-4|KCNMB3	nc|ENSG00000171121|Q9NPA1-4|KCNMB3	MSMS	A375_MHC_IP_R2	2	655.756103515625	2	655.86048	1309.70641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.038	1	91.772	91.272	92.272	0.7345								0	0	0	0.16191	1	34640	34640		8.7454	0	1				31195	7576	22570	22736	30467	30467					0.06394257413967352
LLCFSISIWY	10	Unmodified	_LLCFSISIWY_					0	0	0			REV__OR51F2|p.P32S|1|0.17|ENSG00000176925|chr11:4821479-4821479|C/T|missense_variant	REV__OR51F2|p.P32S|1|0.17|ENSG00000176925|chr11:4821479-4821479|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	622.2052001953125	2	622.822835	1243.63112	-0.44399	-0.00027653	2.81	0.0017501	2.366	0.0014736	622.824231509431	98.528	0.30732	98.528	98.352	98.659	0					9	5	2	0	0	0	0.83086	1	36211	36211		15.847	2.2323	1	779510	+		31196	27678	22571	22737	30468	30468					0.01904699953593081
LLCHRQEERRL	11	Unmodified	_LLCHRQEERRL_					0	0	0		ENST00000337530.10_3_9:115408056-115421751:+|nuORF	ENST00000337530.10_3_9:115408056-115421751:+|nuORF	ENST00000337530.10_3_9:115408056-115421751:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	484.7126159667969	3	484.93326	1451.77795	-0.52947	-0.00025676	-0.7954	-0.00038572	-1.3249	-0.00064248	484.932648758246	132.92	0.76677	132.92	132.64	133.41	0					23	14	2	0	0	0	0.73781	1	51413	51413		1.4551	0	1	3360900			31197	10830	22572	22738	30469	30469					0.07013189891222282
LLCHRQEERRL	11	Unmodified	_LLCHRQEERRL_					0	0	0		ENST00000337530.10_3_9:115408056-115421751:+|nuORF	ENST00000337530.10_3_9:115408056-115421751:+|nuORF	ENST00000337530.10_3_9:115408056-115421751:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	484.93326	1451.77795	-0.52947	-0.00025676	-0.7954	-0.00038572	-1.3249	-0.00064248	484.932648758246	132.92	0.76677	132.92	132.64	133.41	0	-0.057889	0.00032964	NaN	1.4551	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3360900			31198	10830	22572	22738							0.07013189891222282
LLCIPAAL	8	Unmodified	_LLCIPAAL_					0	0	0			REV__nc|ENSG00000012779|P09917-5|ALOX5	REV__nc|ENSG00000012779|P09917-5|ALOX5	MULTI-MSMS	A375_MHC_IP_R1	1	407.6476745605469	2	407.248775	812.482997	-0.5783	-0.00023551	-1.6486	-0.00067139	-2.2269	-0.00090691	407.24786168282907	139.96	0.30753	139.96	139.83	140.13	0					8	5	2	0	0	0	0.77781	1	53804	53804		2.8892	0	1	1349100	+		31199	16224	22574	22739	30470	30470					0.06925433490380328
LLCLAAWCLL	10	Unmodified	_LLCLAAWCLL_					0	0	0			REV__nc|ENSG00000241657|A0A584|TRBV11-2	REV__nc|ENSG00000241657|A0A584|TRBV11-2	MULTI-SECPEP	A375_MHC_IP_R1	1	374.2767333984375	3	373.541541	1117.60279	0.63308	0.00023648	2.7017	0.0010092	3.3348	0.0012457	373.87572554734123	44.436	1.0704	44.436	43.909	44.98	0					30	20	2	0	0	0	0.78079	1	15566	15566		7.1017	0	1	2410800	+		31200	27467	22575	22740	30471	30471					0.04869678772638508
LLCLAPLTLE	10	Unmodified	_LLCLAPLTLE_					0	0	0		ENST00000345122.7_1_14:32559996-32560074:+|nuORF	ENST00000345122.7_1_14:32559996-32560074:+|nuORF	ENST00000345122.7_1_14:32559996-32560074:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1085.7567138671875	1	1085.62749	1084.62022	0.17232	0.00018707	4.2362	0.0045989	4.4085	0.004786	1086.6331813050456	118.62	0.40485	119.23	119.15	119.56	0.60909					9	7	2	0	0	0	0.93404	1	45053	45053		1.8442	0.19162	1	30178000			31201	10903	22576	22741	30472	30472					0.08129297579284867
LLCLLMITV	9	Unmodified	_LLCLLMITV_					0	0	0		ENSG00000139211|ENST00000550413|AMIGO2;AMIGO2|p.N345*|1|0.2|ENSG00000139211|chr12:47077955-47077970|TAACCAGACTTCCATT/-|frameshift_variant	ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	MULTI-SECPEP	A375_MHC_IP_R2	2	510.1806640625	2	509.805599	1017.59665	-0.47827	-0.00024383	0.26359	0.00013438	-0.21468	-0.00010945	509.8056409356659	94.992	0.4564	95.742	95.533	95.99	0.75045					13	8	2	0	0	0	0.60012	1	36166	36166		18.135	0	1	1313300			31202	123	22577	22742	30473	30473					0.08855160541111218
LLCNQDKETL	10	Unmodified	_LLCNQDKETL_					0	0	0		nc|ENSG00000165506|Q9NVR5-2|DNAAF2;ENSG00000165506|ENST00000298292|DNAAF2	nc|ENSG00000165506|Q9NVR5-2|DNAAF2	nc|ENSG00000165506|Q9NVR5-2|DNAAF2	MSMS	A375_MHC_IP_R1	1	392.9598083496094	3	392.869151	1175.58562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.196	1	24.196	23.696	24.696	0								0	0	0	0.13721	1	6807	6807		27.088	7.4624	1				31203	6961	22578	22743	30474	30474					0.004854297005294939
LLCPALLLLLL	11	Unmodified	_LLCPALLLLLL_					0	0	0		nc|ENSG00000087116|O95450-2|ADAMTS2;ENSG00000087116|ENST00000251582|ADAMTS2	nc|ENSG00000087116|O95450-2|ADAMTS2	nc|ENSG00000087116|O95450-2|ADAMTS2	MULTI-SECPEP	A375_MHC_IP_R2	2	1195.2999267578125	1	1194.78942	1193.78214	0.18694	0.00022335	3.3287	0.0039771	3.5157	0.0042005	1195.794691669788	122.87	0.255	123.24	123.12	123.38	0.37661					5	4	2	0	0	0	0.99526	1	47170	47170		3.5965	0	1	19725000			31204	1859	22579	22744	30475	30475					0.1929988633226003
LLCWCSLYF	9	Unmodified	_LLCWCSLYF_					0	0	0		ENST00000417811.2_3_7:32763128-32763203:-|nuORF	ENST00000417811.2_3_7:32763128-32763203:-|nuORF	ENST00000417811.2_3_7:32763128-32763203:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	573.7257690429688	2	574.269381	1146.52421	-0.16891	-9.7E-05	-1.9599	-0.0011255	-2.1288	-0.0012225	574.2683744028288	102.44	0.45334	102.44	102.25	102.71	0					12	8	2	0	0	0	0.73662	1	37665	37665		14.582	3.7578	1	1947600			31205	11702	22580	22745	30476	30476					-0.043191735324398906
LLCYQKKI	8	Unmodified	_LLCYQKKI_					0	0	0			REV__SEC63|p.R125C|1|0.83|ENSG00000025796|chr6:107921876-107921876|G/A|missense_variant	REV__SEC63|p.R125C|1|0.83|ENSG00000025796|chr6:107921876-107921876|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	505.10845947265625	2	504.799163	1007.58377	-0.56542	-0.00028542	0.29968	0.00015128	-0.26574	-0.00013415	504.79937558021146	52.983	0.50565	52.983	52.744	53.25	0					14	8	2	0	0	0	0.972	1	18915	18915		4.756	0.42677	1	2160300	+		31206	27934	22581	22746	30477	30477					0.0802846547325089
LLDAFKEAN	9	Unmodified	_LLDAFKEAN_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.G674Wfs*6|1|0.27|ENSG00000114867|chr3:184323170-184323171|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-SECPEP	A375_MHC_IP_R1	1	511.1715393066406	2	510.771657	1019.52876	-0.13182	-6.7332E-05	0.31365	0.0001602	0.18183	9.2872E-05	510.7717436800319	116.25	0.66103	116.25	115.94	116.6	0					29	12	3	0	0	0	0.3213	1	42622	42622		37.974	1.847	1	8524100			31207	3254	22582	22747	30478	30478					0.019777502063334396
LLDALEQHL	9	Unmodified	_LLDALEQHL_					0	0	0		nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM	nc|ENSG00000073921|Q13492-4|PICALM	nc|ENSG00000073921|Q13492-4|PICALM	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1478271484375	2	526.292756	1050.57096	-0.40568	-0.00021351	-0.77534	-0.00040806	-1.181	-0.00062157	526.2923464011016	70.323	0.4586	71.058	70.844	71.302	0.73421					13	8	2	0	0	0	0.65246	1	26651	26651		10.824	4.6181	1	976230			31208	1573	22583	22748	30479	30479					0.04769725614710296
LLDCARQIL	9	Unmodified	_LLDCARQIL_					0	0	0		ENSG00000181240|ENST00000321510|SLC25A41	ENSG00000181240|ENST00000321510|SLC25A41	ENSG00000181240|ENST00000321510|SLC25A41	MULTI-SECPEP	A375_MHC_IP_R2	2	522.2341918945312	2	522.797152	1043.57975	-0.31237	-0.00016331	-2.1171	-0.0011068	-2.4295	-0.0012701	523.2989558614515	95.084	0.3573	95.835	95.684	96.041	0.75045					8	6	2	0	0	0	0.75466	1	36175	36175		7.9102	5.0209	1	1096500			31209	8340	22584	22749	30480	30480					0.059703759795411315
LLDCLVNP	8	Unmodified	_LLDCLVNP_					0	0	0		ENSG00000169087|ENST00000306103|HSPBAP1	ENSG00000169087|ENST00000306103|HSPBAP1	ENSG00000169087|ENST00000306103|HSPBAP1	MSMS	A375_MHC_IP_R1	1	443.692138671875	2	443.738771	885.462989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.947	1	36.947	36.447	37.447	0								0	0	0	0.16876	1	12416	12416		14.582	2.0501	1				31210	7380	22585	22750	30481	30481					0.01567637759774243
LLDCSCNWPND	11	Unmodified	_LLDCSCNWPND_					0	0	0			REV__ENSG00000179542|ENST00000356928|SLITRK4	REV__ENSG00000179542|ENST00000356928|SLITRK4	MSMS	A375_MHC_IP_R2	2	640.1044311523438	2	640.25773	1278.50091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.602	1	100.36	99.865	100.86	0.76278								0	0	0	0.16124	1	37780	37780		12.241	4.6317	1		+		31211	21569	22586	22751	30482	30482					-0.1272026410770195
LLDDAQRLLY	10	Unmodified	_LLDDAQRLLY_					0	0	0		ENST00000594803.1_1_19:58233776-58238980:-|nuORF;ENSG00000083814|ENST00000317398|ZNF671;ENST00000523439.1_1_19:57999318-58003198:+|nuORF;ZNF419|p.R139Dfs*9|1|0.36|ENSG00000105136|chr19:57492968-57492968|A/-|frameshift_variant;nc|ENSG00000152439|Q6PK81-2|ZNF773;ENSG00000152439|ENST00000282292|ZNF773;nc|ENSG00000105136|Q96HQ0-6|ZNF419;nc|ENSG00000105136|Q96HQ0-2|ZNF419;nc|ENSG00000105136|Q96HQ0-3|ZNF419;nc|ENSG00000105136|Q96HQ0-4|ZNF419;ENSG00000105136|ENST00000221735|ZNF419;nc|ENSG00000105136|Q96HQ0-5|ZNF419	ENST00000594803.1_1_19:58233776-58238980:-|nuORF	ENST00000594803.1_1_19:58233776-58238980:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	610.7373657226562	2	610.337695	1218.66084	-0.14507	-8.8544E-05	0.03405	2.0782E-05	-0.11102	-6.7761E-05	610.3376031357369	92.361	0.60886	92.361	92.059	92.668	0					24	11	3	0	0	0	0.011525	1	33921	33921		117.76	55.188	1	6050400			31212	1788	22587	22752	30483	30483					0.06025355223300721
LLDDAQRLLY	10	Unmodified	_LLDDAQRLLY_					0	0	0		ENST00000594803.1_1_19:58233776-58238980:-|nuORF;ENSG00000083814|ENST00000317398|ZNF671;ENST00000523439.1_1_19:57999318-58003198:+|nuORF;ZNF419|p.R139Dfs*9|1|0.36|ENSG00000105136|chr19:57492968-57492968|A/-|frameshift_variant;nc|ENSG00000152439|Q6PK81-2|ZNF773;ENSG00000152439|ENST00000282292|ZNF773;nc|ENSG00000105136|Q96HQ0-6|ZNF419;nc|ENSG00000105136|Q96HQ0-2|ZNF419;nc|ENSG00000105136|Q96HQ0-3|ZNF419;nc|ENSG00000105136|Q96HQ0-4|ZNF419;ENSG00000105136|ENST00000221735|ZNF419;nc|ENSG00000105136|Q96HQ0-5|ZNF419	ENST00000594803.1_1_19:58233776-58238980:-|nuORF	ENST00000594803.1_1_19:58233776-58238980:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	610.7371215820312	2	610.337695	1218.66084	-0.39347	-0.00024015	-0.29542	-0.00018031	-0.68889	-0.00042046	610.3376718275795	91.632	0.65845	92.367	92.122	92.78	0.73451					25	12	3	0	0	0	0.0036544	1	34834	34834		96.936	35.334	1	5387800			31213	1788	22587	22752	30484	30484					0.06025355223300721
LLDDERHLR	9	Unmodified	_LLDDERHLR_					0	0	0			REV__nc|ENSG00000198300|Q9GZU2-2|PEG3	REV__nc|ENSG00000198300|Q9GZU2-2|PEG3	MULTI-SECPEP	A375_MHC_IP_R1	1	584.2180786132812	2	583.817461	1165.62037	-0.17173	-0.00010026	2.6309	0.0015359	2.4591	0.0014357	583.8191268626936	96.642	0.66029	96.642	96.325	96.985	0					13	12	2	0	0	0	0.16676	1	35545	35545		58.679	26.373	1	1518200	+		31214	22361	22588	22753	30485	30485					0.04418433623504825
LLDDIFAQL	9	Unmodified	_LLDDIFAQL_					0	0	0		ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-SECPEP	A375_MHC_IP_R1	1	524.7074584960938	2	524.289682	1046.56481	-0.7454	-0.00039081	-0.35136	-0.00018421	-1.0968	-0.00057502	524.7912937129174	133.48	0.25429	133.48	133.36	133.61	0					5	4	2	0	0	0	0.20567	1	51469	51469		54.774	27.145	1	1756400			31215	1420	22589	22754	30486	30486					0.04339207383191024
LLDDIFAQL	9	Unmodified	_LLDDIFAQL_					0	0	0		ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-MATCH	A375_MHC_IP_R2	2		2	524.289682	1046.56481	-0.44821	-0.00023499	-0.60061	-0.00031489	-1.0488	-0.00054988	524.2893415777542	133.31	0.20334	133.48	133.35	133.55	0.16487	-0.0033033	-3.4678E-05	NaN	64.236	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1728700			31216	1420	22589	22754							0.04339207383191024
LLDDTGLAY	9	Unmodified	_LLDDTGLAY_					0	0	0		ENST00000473626.1_1_2:219457053-219457431:+|nuORF;nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	ENST00000473626.1_1_2:219457053-219457431:+|nuORF	ENST00000473626.1_1_2:219457053-219457431:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	490.7010192871094	2	490.75039	979.486227	-0.063505	-3.1165E-05	-0.60011	-0.00029451	-0.66362	-0.00032567	490.7500453945692	92.54	0.50867	92.54	92.312	92.821	0					11	9	2	0	0	0	0.27971	1	34008	34008		32.117	6.7177	1	571370			31217	5494	22590	22755	30487	30487					-0.004336449219067617
LLDDTGLAY	9	Unmodified	_LLDDTGLAY_					0	0	0		ENST00000473626.1_1_2:219457053-219457431:+|nuORF;nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	ENST00000473626.1_1_2:219457053-219457431:+|nuORF	ENST00000473626.1_1_2:219457053-219457431:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	980.5778198242188	1	980.493504	979.486227	0.39682	0.00038908	-0.72267	-0.00070857	-0.32585	-0.0003195	980.4926073436885	92.592	1.2721	92.592	92.261	93.533	0					43	24	3	0	0	0	0.17328	1	34153	34153		39.957	7.6518	1	13603000			31218	5494	22590	22755	30488	30488					-0.004336449219067617
LLDDTGLAY	9	Unmodified	_LLDDTGLAY_					0	0	0		ENST00000473626.1_1_2:219457053-219457431:+|nuORF;nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	ENST00000473626.1_1_2:219457053-219457431:+|nuORF	ENST00000473626.1_1_2:219457053-219457431:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	490.75039	979.486227	-0.4534	-0.00022251	0.015467	7.5907E-06	-0.43793	-0.00021492	490.75031900660076	91.954	0.35309	92.693	92.432	92.785	0.73902	0.076535	0.00032612	NaN	32.117	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1021200			31219	5494	22590	22755							-0.004336449219067617
LLDEAIQAV	9	Unmodified	_LLDEAIQAV_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000563984.1_1_16:46717374-46723045:-|nuORF;VPS35|p.A69Dfs*3|1|0.15|ENSG00000069329|chr16:46681493-46681494|GG/-|frameshift_variant;ENST00000569950.1_1_16:46715399-46723351:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MSMS	A375_MHC_IP_R1	1	971.9390869140625	1	971.540788	970.533512	0.32985	0.00032047	-1.0876	-0.0010567	-0.75777	-0.0007362	971.5396580759483	92.942	0.25306	92.942	92.821	93.074	0					6	4	2	0	0	0	0.0090323	1	34194	34194		99.799	17.909	1	1176300			31220	1476	22591	22756	30489	30489					0.0470663434908829
LLDEAIQAV	9	Unmodified	_LLDEAIQAV_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000563984.1_1_16:46717374-46723045:-|nuORF;VPS35|p.A69Dfs*3|1|0.15|ENSG00000069329|chr16:46681493-46681494|GG/-|frameshift_variant;ENST00000569950.1_1_16:46715399-46723351:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MSMS	A375_MHC_IP_R2	2	486.6732177734375	2	486.274032	970.533512	-0.52069	-0.0002532	-1.0912	-0.00053064	-1.6119	-0.00078383	486.2733015918334	92.306	0.506	93.045	92.785	93.291	0.73902					22	9	3	0	0	0	0.05754	1	35118	35118		61.357	5.1804	1	1376700			31221	1476	22591	22756	30490	30490					0.0470663434908829
LLDEAIQAV	9	Unmodified	_LLDEAIQAV_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000563984.1_1_16:46717374-46723045:-|nuORF;VPS35|p.A69Dfs*3|1|0.15|ENSG00000069329|chr16:46681493-46681494|GG/-|frameshift_variant;ENST00000569950.1_1_16:46715399-46723351:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MATCH	A375_MHC_IP_R1	1		2	486.274032	970.533512	-0.040572	-1.9729E-05	-1.4706	-0.00071511	-1.5112	-0.00073484	486.2733243725566	92.998	0.50943	92.998	92.718	93.228	0	-0.023742	-0.00011867	NaN	61.357	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1840200			31222	1476	22591	22756							0.0470663434908829
LLDECLLFS	9	Unmodified	_LLDECLLFS_					0	0	0			REV__ENSG00000135698|ENST00000258169|MPHOSPH6	REV__ENSG00000135698|ENST00000258169|MPHOSPH6	MSMS	A375_MHC_IP_R2	2	526.6771850585938	2	526.770268	1051.52598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.86	1	85.596	85.096	86.096	0.73601								0	0	0	0.14677	1	32261	32261		26.884	3.7352	1		+		31223	18876	22592	22757	30491	30491					0.0022815875715878065
LLDEGMEV	8	Unmodified	_LLDEGMEV_					0	0	0		ENSG00000110328|ENST00000227756|GALNT18	ENSG00000110328|ENST00000227756|GALNT18	ENSG00000110328|ENST00000227756|GALNT18	MSMS	A375_MHC_IP_R1	1	453.15179443359375	2	453.217869	904.421184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.861	1	81.861	81.361	82.361	0								0	0	0	0.16876	1	29922	29922		15.768	0	1				31224	2931	22593	22758	30492	30492					-0.03484962719403484
LLDEHHISY	9	Unmodified	_LLDEHHISY_					0	0	0		SPECC1L-MED15|5|fusion;SPECC1L-MED15|1|fusion;SPECC1L-MED15|6|fusion;SPECC1L-MED15|2|fusion;nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L	SPECC1L-MED15|5|fusion	SPECC1L-MED15|5|fusion	MULTI-SECPEP	A375_MHC_IP_R1	1	376.9501647949219	3	376.189101	1125.54547	0.42181	0.00015868	-0.027392	-1.0305E-05	0.39442	0.00014838	376.1890723455026	40.68	1.5766	40.68	40.355	41.932	0					69	30	5	0	0	0	0.023756	1	14017	14017		82.529	47.597	1	81732000			31225	29231	22594	22759	30493	30493					-0.012277489076950587
LLDEHHISY	9	Unmodified	_LLDEHHISY_					0	0	0		SPECC1L-MED15|5|fusion;SPECC1L-MED15|1|fusion;SPECC1L-MED15|6|fusion;SPECC1L-MED15|2|fusion;nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L	SPECC1L-MED15|5|fusion	SPECC1L-MED15|5|fusion	MULTI-SECPEP	A375_MHC_IP_R1	1	564.1798706054688	2	563.780013	1125.54547	-0.32828	-0.00018508	-0.025044	-1.412E-05	-0.35333	-0.0001992	563.7799491548967	40.686	0.55695	40.686	40.406	40.963	0					33	10	4	0	0	0	0.0090265	1	13977	13977		144.35	90.517	1	42089000			31226	29231	22594	22759	30494	30494					-0.012277489076950587
LLDEHHISY	9	Unmodified	_LLDEHHISY_					0	0	0		SPECC1L-MED15|5|fusion;SPECC1L-MED15|1|fusion;SPECC1L-MED15|6|fusion;SPECC1L-MED15|2|fusion;nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L	SPECC1L-MED15|5|fusion	SPECC1L-MED15|5|fusion	MULTI-SECPEP	A375_MHC_IP_R2	2	376.58917236328125	3	376.189101	1125.54547	0.19621	7.3813E-05	-0.35355	-0.000133	-0.15734	-5.9188E-05	376.18893125349626	39.927	1.2189	40.702	40.371	41.59	0.77451					52	23	5	0	0	0	0.014271	1	14730	14730		89.401	63.133	1	78080000			31227	29231	22594	22759	30495	30495					-0.012277489076950587
LLDEHHISY	9	Unmodified	_LLDEHHISY_					0	0	0		SPECC1L-MED15|5|fusion;SPECC1L-MED15|1|fusion;SPECC1L-MED15|6|fusion;SPECC1L-MED15|2|fusion;nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L	SPECC1L-MED15|5|fusion	SPECC1L-MED15|5|fusion	MULTI-SECPEP	A375_MHC_IP_R2	2	564.1797485351562	2	563.780013	1125.54547	-0.55387	-0.00031226	-0.19852	-0.00011192	-0.75239	-0.00042418	563.7798586910807	39.899	0.66007	40.674	40.422	41.082	0.77451					32	12	4	0	0	0	0.0090265	1	14745	14745		131.27	77.435	1	31062000			31228	29231	22594	22759	30496	30496					-0.012277489076950587
LLDELLQKGY	10	Unmodified	_LLDELLQKGY_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-SECPEP	A375_MHC_IP_R1	1	596.734130859375	2	596.334621	1190.65469	-0.45134	-0.00026915	-0.75989	-0.00045315	-1.2112	-0.0007223	596.3343003173644	94.074	0.45187	94.074	93.84	94.291	0					17	8	3	0	0	0	0.055108	1	34584	34584		96.936	51.196	1	2822400			31229	1290;12706	22595	22760	30497	30497					0.06698836991768076
LLDELLQKGY	10	Unmodified	_LLDELLQKGY_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-SECPEP	A375_MHC_IP_R2	2	596.7347412109375	2	596.334621	1190.65469	-0.45008	-0.0002684	0.70101	0.00041804	0.25093	0.00014964	596.3349119772882	93.34	0.55885	94.079	93.899	94.458	0.73902					15	10	2	0	0	0	0.06997	1	35491	35491		93.938	55.323	1	3018800			31230	1290;12706	22595	22760	30498	30498					0.06698836991768076
LLDENNVSSY	10	Unmodified	_LLDENNVSSY_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	A375_MHC_IP_R1	1	577.6716918945312	2	577.272218	1152.52988	-0.19333	-0.00011161	-0.23778	-0.00013726	-0.43111	-0.00024887	577.2718801701005	61.509	0.50914	61.509	61.279	61.788	0					13	9	2	0	0	0	0.1276	1	22214	22214		57.722	27.881	1	3370600			31231	9866	22596	22761	30499	30499					-0.04028080215425689
LLDEPNRLVQ	10	Unmodified	_LLDEPNRLVQ_					0	0	0			REV__ENST00000389400.4_1_10:86320393-86320726:+|nuORF	REV__ENST00000389400.4_1_10:86320393-86320726:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	399.9363098144531	3	399.559305	1195.65609	-0.44989	-0.00017976	-0.33892	-0.00013542	-0.78881	-0.00031518	399.5591500357308	24.765	0.66087	25.408	25.212	25.873	0.64368					19	10	2	0	0	0	0.70972	1	8149	8149		7.9454	0.46833	1	14501000	+		31232	24253	22597	22762	30500	30500					0.0660847108051712
LLDEPTNHL	9	Unmodified	_LLDEPTNHL_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-SECPEP	A375_MHC_IP_R1	1	526.674072265625	2	526.274564	1050.53457	-0.25179	-0.00013251	-0.49906	-0.00026264	-0.75085	-0.00039515	526.2742878744217	47.947	0.7076	47.947	47.668	48.375	0					33	13	4	0	0	0	0.022401	1	16873	16873		110.67	0	1	11424000			31233	1120	22598	22763	30501	30501					0.011328487179980584
LLDEPTNHL	9	Unmodified	_LLDEPTNHL_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-SECPEP	A375_MHC_IP_R1	1	526.6744995117188	2	526.274564	1050.53457	-0.47053	-0.00024763	-0.23088	-0.00012151	-0.70141	-0.00036914	526.2745107141048	50.745	0.96524	50.745	50.305	51.27	0					51	18	5	0	0	0	0.061442	1	17956	17956		82.529	0	1	15058000			31234	1120	22598	22763	30502	30502					0.011328487179980584
LLDEPTNHL	9	Unmodified	_LLDEPTNHL_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-SECPEP	A375_MHC_IP_R2	2	526.674560546875	2	526.274564	1050.53457	-0.27293	-0.00014364	-0.30001	-0.00015789	-0.57294	-0.00030153	526.2744200084983	47.232	0.50987	47.994	47.664	48.174	0.76128					22	9	3	0	0	0	0.05217	1	17675	17675		89.401	0	1	12950000			31235	1120	22598	22763	30503	30503					0.011328487179980584
LLDEPTNHL	9	Unmodified	_LLDEPTNHL_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-SECPEP	A375_MHC_IP_R2	2	525.7074584960938	2	526.274564	1050.53457	-0.69491	-0.00036571	0.32344	0.00017022	-0.37146	-0.00019549	526.2745639299962	49.956	0.86388	50.71	50.142	51.006	0.75406					28	16	2	0	0	0	0.04038	1	18795	18795		96.111	0	1	17316000			31236	1120	22598	22763	30504	30504					0.011328487179980584
LLDEQQVNV	9	Unmodified	_LLDEQQVNV_					0	0	0		nc|ENSG00000125968|P41134-2|ID1;ENSG00000125968|ENST00000376112|ID1	nc|ENSG00000125968|P41134-2|ID1	nc|ENSG00000125968|P41134-2|ID1	MULTI-SECPEP	A375_MHC_IP_R1	1	529.6796875	2	529.279846	1056.54514	-0.74986	-0.00039689	0.082745	4.3795E-05	-0.66712	-0.00035309	529.2799638154305	66.381	0.76434	66.381	66.122	66.887	0					30	14	3	0	0	0	0.04038	1	24061	24061		96.111	37.432	1	3055400			31237	4014	22599	22764	30505	30505					0.019128313724195323
LLDEQQVNV	9	Unmodified	_LLDEQQVNV_					0	0	0		nc|ENSG00000125968|P41134-2|ID1;ENSG00000125968|ENST00000376112|ID1	nc|ENSG00000125968|P41134-2|ID1	nc|ENSG00000125968|P41134-2|ID1	MULTI-SECPEP	A375_MHC_IP_R2	2	529.6790161132812	2	529.279846	1056.54514	-0.74705	-0.0003954	-0.5202	-0.00027533	-1.2672	-0.00067073	529.2797426940433	65.762	0.86311	66.5	65.817	66.68	0.73811					52	16	4	0	0	0	0.016309	1	24908	24908		92.653	42.72	1	4246500			31238	4014	22599	22764	30506	30506					0.019128313724195323
LLDFFGED	8	Unmodified	_LLDFFGED_					0	0	0			REV__ENSG00000121957|ENST00000264126|GPSM2	REV__ENSG00000121957|ENST00000264126|GPSM2	MULTI-MSMS	A375_MHC_IP_R2	2	478.6251525878906	2	478.224008	954.433463	-0.27531	-0.00013166	1.131	0.00054089	0.85573	0.00040923	478.2248061921899	95.01	0.50666	95.76	95.483	95.99	0.75045					16	9	2	0	0	0	0.77488	1	36111	36111		13.508	13.508	1	3216900	+		31239	18181	22600	22765	30507	30507					-0.04557602984709774
LLDFPIQR	8	Unmodified	_LLDFPIQR_					0	0	0			REV__ENST00000407916.2_1_7:55002433-55002823:+|nuORF	REV__ENST00000407916.2_1_7:55002433-55002823:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	502.20428466796875	2	501.292559	1000.57057	-0.52848	-0.00026492	-0.34364	-0.00017226	-0.87212	-0.00043719	501.292337723181	64.405	1.1706	65.145	64.648	65.819	0.74022					52	22	4	0	0	0	0.77488	1	24330	24330		13.508	0	1	22486000	+		31240	24455	22601	22766	30508	30508					0.07030350685511166
LLDFSEPDC	9	Unmodified	_LLDFSEPDC_					0	0	0		ENST00000551558.1_1_12:77439797-77459307:-|nuORF;nc|ENSG00000165891|Q96AV8-2|E2F7;nc|ENSG00000165891|Q96AV8-3|E2F7;ENSG00000165891|ENST00000322886|E2F7	ENST00000551558.1_1_12:77439797-77459307:-|nuORF	ENST00000551558.1_1_12:77439797-77459307:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	520.249267578125	2	519.726058	1037.43756	-0.38817	-0.00020174	1.0971	0.00057019	0.70891	0.00036844	519.7263820703955	88.789	0.71046	88.789	88.51	89.221	0					21	13	2	0	0	0	0.58047	1	32597	32597		15.847	0	1	2743500			31241	6998	22602	22767	30509	30509					-0.07965881553309373
LLDFSEPDC	9	Unmodified	_LLDFSEPDC_					0	0	0		ENST00000551558.1_1_12:77439797-77459307:-|nuORF;nc|ENSG00000165891|Q96AV8-2|E2F7;nc|ENSG00000165891|Q96AV8-3|E2F7;ENSG00000165891|ENST00000322886|E2F7	ENST00000551558.1_1_12:77439797-77459307:-|nuORF	ENST00000551558.1_1_12:77439797-77459307:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	519.726058	1037.43756	-0.38817	-0.00020174	1.0971	0.00057019	0.70891	0.00036844	519.7263820703955	88.789	0.71046	88.789	88.51	89.221	0	-0.085856	7.7834E-05	NaN	15.847	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2743500			31242	6998	22602	22767							-0.07965881553309373
LLDFSEPDC	9	Unmodified	_LLDFSEPDC_					0	0	0		ENST00000551558.1_1_12:77439797-77459307:-|nuORF;nc|ENSG00000165891|Q96AV8-2|E2F7;nc|ENSG00000165891|Q96AV8-3|E2F7;ENSG00000165891|ENST00000322886|E2F7	ENST00000551558.1_1_12:77439797-77459307:-|nuORF	ENST00000551558.1_1_12:77439797-77459307:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	519.726058	1037.43756	-0.60005	-0.00031186	0.90533	0.00047052	0.30528	0.00015866	519.7261401016408	88.229	0.81027	88.961	88.671	89.482	0.7318	0.085856	-0.00012149	NaN	15.847	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3278200			31243	6998	22602	22767							-0.07965881553309373
LLDFSYEQY	9	Unmodified	_LLDFSYEQY_					0	0	0		nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	MULTI-MSMS	A375_MHC_IP_R2	2	589.6744384765625	2	589.274229	1176.53391	-0.39475	-0.00023262	0.67928	0.00040028	0.28452	0.00016766	589.2744291437044	110.96	0.66238	111.69	111.34	112.01	0.73692					20	12	2	0	0	0	0.018481	1	41846	41846		85.357	21.12	1	2059800			31244	4008	22603	22768	30510	30510					-0.04729990721716604
LLDFWRLVWEF	11	Unmodified	_LLDFWRLVWEF_					0	0	0		ENSG00000072135|ENST00000175756|PTPN18;ENST00000479295.1_2_2:131116538-131117279:+|nuORF;ENST00000420717.5_1_2:131116478-131119809:+|nuORF	ENSG00000072135|ENST00000175756|PTPN18	ENSG00000072135|ENST00000175756|PTPN18	MSMS	A375_MHC_IP_R2	2	508.6751708984375	3	508.606367	1522.79727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.09	1	88.822	88.322	89.322	0.7318								0	0	0	0.16309	1	33518	33518		2.6312	1.3016	1				31245	1531	22604	22769	30511	30511					0.05678469453778234
LLDGAFKL	8	Unmodified	_LLDGAFKL_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;ENST00000491646.1_1_2:122217554-122217677:-|nuORF	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	A375_MHC_IP_R1	1	439.1634521484375	2	438.763104	875.511654	0.098685	4.3299E-05	-0.19837	-8.7039E-05	-0.099688	-4.374E-05	438.76294176547424	92.9	0.55883	92.9	92.617	93.176	0					22	10	3	0	0	0	0.30248	1	34132	34132		58.679	14.272	1	3191800			31246	1576	22605	22770	30512	30512					0.06891874391192232
LLDGAFKL	8	Unmodified	_LLDGAFKL_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;ENST00000491646.1_1_2:122217554-122217677:-|nuORF	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	A375_MHC_IP_R2	2	439.16314697265625	2	438.763104	875.511654	-0.22637	-9.9322E-05	-0.036316	-1.5934E-05	-0.26268	-0.00011526	438.76301186123084	92.066	0.45306	92.805	92.534	92.987	0.73902					19	8	3	0	0	0	0.30248	1	35008	35008		58.679	14.272	1	2629400			31247	1576	22605	22770	30513	30513					0.06891874391192232
LLDGDTQNY	9	Unmodified	_LLDGDTQNY_					0	0	0		ENSG00000183826|ENST00000481247|BTBD9;nc|ENSG00000183826|Q96Q07-3|BTBD9;nc|ENSG00000183826|Q96Q07-2|BTBD9	ENSG00000183826|ENST00000481247|BTBD9	ENSG00000183826|ENST00000481247|BTBD9	MULTI-MSMS	A375_MHC_IP_R1	1	519.6847534179688	2	519.740554	1037.46655	-0.63534	-0.00033021	0.24167	0.0001256	-0.39367	-0.00020461	519.7406350305072	52.673	0.66125	52.673	52.387	53.048	0					31	12	3	0	0	0	0.05754	1	18747	18747		61.357	17.499	1	11113000			31248	8533	22606	22771	30514	30514					-0.050680209326628756
LLDGDTQNY	9	Unmodified	_LLDGDTQNY_					0	0	0		ENSG00000183826|ENST00000481247|BTBD9;nc|ENSG00000183826|Q96Q07-3|BTBD9;nc|ENSG00000183826|Q96Q07-2|BTBD9	ENSG00000183826|ENST00000481247|BTBD9	ENSG00000183826|ENST00000481247|BTBD9	MULTI-MSMS	A375_MHC_IP_R2	2	519.6849365234375	2	519.740554	1037.46655	-1.0173	-0.00052875	-0.08539	-4.4381E-05	-1.1027	-0.00057313	519.7404775601498	52.091	0.71029	52.844	52.524	53.234	0.75225					30	13	3	0	0	0	0.2002	1	19549	19549		37.974	17.52	1	12391000			31249	8533	22606	22771	30515	30515					-0.050680209326628756
LLDGFPRTV	9	Unmodified	_LLDGFPRTV_					0	0	0		ENST00000469238.1_1_1:33480014-33487286:-|nuORF;nc|ENSG00000004455|P54819-4|AK2;ENST00000427762.1_1_1:59096724-59097153:-|nuORF;nc|ENSG00000004455|P54819-6|AK2;nc|ENSG00000004455|P54819-3|AK2;nc|ENSG00000004455|P54819-5|AK2;nc|ENSG00000004455|P54819-2|AK2;ENSG00000004455|ENST00000672715|AK2	ENST00000469238.1_1_1:33480014-33487286:-|nuORF	ENST00000469238.1_1_1:33480014-33487286:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	509.6888427734375	2	509.290017	1016.56548	-0.66285	-0.00033758	-2.6048	-0.0013266	-3.2677	-0.0016642	509.28897919775955	79.702	0.50932	80.446	80.098	80.607	0.74474					13	9	2	0	0	0	0.19747	1	30295	30295		38.176	0.20157	1	2043300			31250	865	22607	22772	30516	30516					0.057860468229023354
LLDGGARIHHY	11	Unmodified	_LLDGGARIHHY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R1	1	626.6930541992188	2	626.333279	1250.652	-0.77784	-0.00048719	-1.2117	-0.00075895	-1.9896	-0.0012461	626.3326784281752	86.247	0.60699	86.247	85.971	86.578	0					33	11	4	0	0	0	0.58862	1	31633	31633		45.74	9.2337	1	7693000			31251	6151;14694	22608	22773	30517	30517					0.036704263774709034
LLDGGARIHHY	11	Unmodified	_LLDGGARIHHY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R2	2	626.7326049804688	2	626.333279	1250.652	-0.6377	-0.00039941	-1.0937	-0.000685	-1.7314	-0.0010844	626.3325770753314	85.528	0.7115	86.264	85.984	86.696	0.73601					32	13	3	0	0	0	0.14903	1	32512	32512		61.602	28.157	1	8779700			31252	6151;14694	22608	22773	30518	30518					0.036704263774709034
LLDGNPFRV	9	Unmodified	_LLDGNPFRV_					0	0	0		ENSG00000066557|ENST00000370952|LRRC40;LRRC40|p.P580L|1|0.46|ENSG00000066557|chr1:70145870-70145870|G/A|missense_variant	ENSG00000066557|ENST00000370952|LRRC40	ENSG00000066557|ENST00000370952|LRRC40	MULTI-MSMS	A375_MHC_IP_R2	2	516.1879272460938	2	515.787641	1029.56073	-0.6403	-0.00033026	1.566	0.00080772	0.92569	0.00047746	516.2900925789756	84.891	0.71243	85.627	85.322	86.034	0.73602					29	13	3	0	0	0	0.19747	1	32231	32231		38.176	9.094	1	1976000			31253	1414	22609	22774	30519	30519					0.04713162680127425
LLDGVQFPQLA	11	Unmodified	_LLDGVQFPQLA_					0	0	0			REV__ENST00000460580.5_1_1:214454597-214488183:+|nuORF	REV__ENST00000460580.5_1_1:214454597-214488183:+|nuORF	MSMS	A375_MHC_IP_R2	2	600.97265625	2	600.834788	1199.65502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.451	1	85.187	84.687	85.687	0.73601								0	0	0	0.16124	1	32104	32104		12.241	0	1		+		31254	19364	22610	22775	30520	30520					0.06318256711620052
LLDHHDAFRS	10	Unmodified	_LLDHHDAFRS_					0	0	0			REV__nc|ENSG00000180336|A2RUB1-5|MEIOC	REV__nc|ENSG00000180336|A2RUB1-5|MEIOC	MULTI-MSMS	A375_MHC_IP_R2	2	404.60321044921875	3	404.203633	1209.58907	-0.28818	-0.00011648	-0.4043	-0.00016342	-0.69249	-0.00027991	404.2034833476631	71.589	0.4547	72.323	72.061	72.516	0.73421					13	8	2	0	0	0	0.72014	1	27188	27188		1.5923	0.26264	1	2232700	+		31255	21606	22611	22776	30521	30521					-0.007341394105878862
LLDHHDAFRS	10	Unmodified	_LLDHHDAFRS_					0	0	0			REV__nc|ENSG00000180336|A2RUB1-5|MEIOC	REV__nc|ENSG00000180336|A2RUB1-5|MEIOC	MULTI-MATCH	A375_MHC_IP_R1	1		3	404.203633	1209.58907	-0.28223	-0.00011408	-0.37418	-0.00015124	-0.65641	-0.00026532	404.2035495105741	72.267	0.35449	72.267	72.119	72.474	0	-0.027891	2.1786E-05	NaN	1.5923	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1978400	+		31256	21606	22611	22776							-0.007341394105878862
LLDKDHAL	8	Unmodified	_LLDKDHAL_					0	0	0			REV__tr|U7SUC7|U7SUC7_FUSNU8-amino-7-oxononanoatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01104PE=4SV=1	REV__tr|U7SUC7|U7SUC7_FUSNU8-amino-7-oxononanoatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01104PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	463.6766357421875	2	462.761092	923.507631	-0.2536	-0.00011735	0.23396	0.00010827	-0.019641	-9.089E-06	462.7611561419695	43.88	0.50867	43.88	43.553	44.061	0					15	9	3	0	0	0	0.76248	1	15260	15260		16.942	0	1	2824600	+		31257	28546	22612	22777	30522	30522					0.04281784897466423
LLDKDVLTV	9	Unmodified	_LLDKDVLTV_					0	0	0			REV__LRRC43|p.L280Qfs*18|1|0.1|ENSG00000158113|chr12:122190305-122190306|-/AACTACTAGAAAAAAATTTGGCGGT|frameshift_variant	REV__LRRC43|p.L280Qfs*18|1|0.1|ENSG00000158113|chr12:122190305-122190306|-/AACTACTAGAAAAAAATTTGGCGGT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	508.7047424316406	2	508.305332	1014.59611	-0.79342	-0.0004033	-0.4107	-0.00020876	-1.2041	-0.00061206	508.3049286054231	74.621	0.40775	75.358	75.111	75.519	0.73751					13	7	2	0	0	0	0.24548	1	28325	28325		43.858	7.7313	1	2433800	+		31258	20062	22613	22778	30523	30523					0.08939780417279053
LLDKIQQPGL	10	Unmodified	_LLDKIQQPGL_					0	0	0			REV__ENST00000440217.5_1_1:55136488-55151982:+|nuORF	REV__ENST00000440217.5_1_1:55136488-55151982:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	562.655517578125	2	562.837331	1123.66011	-0.86119	-0.00048471	0.19735	0.00011107	-0.66384	-0.00037364	562.8372553840483	56.376	0.30665	57.126	56.948	57.255	0.75015					9	5	2	0	0	0	0.6774	1	21299	21299		21.537	0	1	2220600	+		31259	21808	22614	22779	30524	30524					0.10322560574218187
LLDKKIGV	8	Unmodified	_LLDKKIGV_					0	0	0		ENSG00000166226|ENST00000299300|CCT2;nc|ENSG00000166226|P78371-2|CCT2	ENSG00000166226|ENST00000299300|CCT2	ENSG00000166226|ENST00000299300|CCT2	MULTI-SECPEP	A375_MHC_IP_R2	2	443.69171142578125	2	443.292028	884.569503	-0.32876	-0.00014574	0.038726	1.7167E-05	-0.29004	-0.00012857	443.29202285278745	67.598	0.45792	68.334	68.104	68.562	0.73631					12	8	2	0	0	0	0.90057	1	25640	25640		29.082	3.6823	1	2150600			31260	7044	22615	22780	30525	30525					0.12260136316615444
LLDKKIGV	8	Unmodified	_LLDKKIGV_					0	0	0		ENSG00000166226|ENST00000299300|CCT2;nc|ENSG00000166226|P78371-2|CCT2	ENSG00000166226|ENST00000299300|CCT2	ENSG00000166226|ENST00000299300|CCT2	MULTI-SECPEP	A375_MHC_IP_R2	2	443.6918640136719	2	443.292028	884.569503	-0.50046	-0.00022185	0.26474	0.00011736	-0.23573	-0.0001045	443.2921079694046	36.003	0.51064	36.766	36.435	36.946	0.76338					16	9	2	0	0	0	0.87643	1	13100	13100		25.399	8.457	1	4079000			31261	7044	22615	22780	30526	30526					0.12260136316615444
LLDKLQHV	8	Unmodified	_LLDKLQHV_					0	0	0			REV__ENSG00000112739|ENST00000337659|PRPF4B;REV__ENST00000463634.6_1_6:4056876-4060847:+|nuORF	REV__ENSG00000112739|ENST00000337659|PRPF4B	MULTI-MSMS	A375_MHC_IP_R1	1	966.6412963867188	1	965.577842	964.570566	0.63867	0.00061669	-0.38757	-0.00037423	0.2511	0.00024246	965.5774336598017	69.453	0.45769	69.453	69.224	69.681	0					14	8	2	0	0	0	0.77675	1	25228	25228		6.7232	0	1	3084700	+		31262	17752;25001	22616	22781	30527	30527					0.08686350685502475
LLDKLQHV	8	Unmodified	_LLDKLQHV_					0	0	0			REV__ENSG00000112739|ENST00000337659|PRPF4B;REV__ENST00000463634.6_1_6:4056876-4060847:+|nuORF	REV__ENSG00000112739|ENST00000337659|PRPF4B	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	965.577842	964.570566	0.63867	0.00061669	-0.38757	-0.00037423	0.2511	0.00024246	965.5774336598017	69.453	0.45769	69.453	69.224	69.681	0	0.10321	-0.00016841	NaN	6.7232	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3084700	+		31263	17752;25001	22616	22781							0.08686350685502475
LLDKLQHV	8	Unmodified	_LLDKLQHV_					0	0	0			REV__ENSG00000112739|ENST00000337659|PRPF4B;REV__ENST00000463634.6_1_6:4056876-4060847:+|nuORF	REV__ENSG00000112739|ENST00000337659|PRPF4B	MULTI-MATCH	A375_MHC_IP_R2	2		1	965.577842	964.570566	0.027336	2.6395E-05	0.12687	0.0001225	0.1542	0.00014889	965.5778786841875	68.511	0.45558	69.247	68.968	69.423	0.73511	-0.10321	0.00032832	NaN	6.7232	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4306000	+		31264	17752;25001	22616	22781							0.08686350685502475
LLDKLYAL	8	Unmodified	_LLDKLYAL_					0	0	0		ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MULTI-SECPEP	A375_MHC_IP_R1	1	475.191650390625	2	474.791861	947.569169	-0.42034	-0.00019957	0.52171	0.0002477	0.10137	4.8129E-05	474.7920144931646	93.508	1.1151	93.508	93.176	94.291	0					42	21	3	0	0	0	0.42778	1	34341	34341		69.105	19.172	1	8044700			31265	8119	22617	22782	30528	30528					0.09328716596746744
LLDKLYAL	8	Unmodified	_LLDKLYAL_					0	0	0		ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MULTI-MSMS	A375_MHC_IP_R2	2	475.07415771484375	2	474.791861	947.569169	-0.46697	-0.00022172	0.089706	4.2591E-05	-0.37727	-0.00017912	474.7918387094854	92.651	1.2185	93.39	93.038	94.256	0.73902					45	23	4	0	0	0	0.25593	1	35331	35331		62.573	8.7399	1	6989700			31266	8119	22617	22782	30529	30529					0.09328716596746744
LLDKWVEQ	8	Unmodified	_LLDKWVEQ_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1456909179688	2	515.782025	1029.5495	-0.4881	-0.00025176	0.15277	7.8795E-05	-0.33534	-0.00017296	515.7819622195552	43.728	0.86437	43.728	43.197	44.061	0					41	16	4	0	0	0	0.60242	1	15224	15224		54.774	54.774	1	5752800	+		31267	18742	22618	22783	30530	30530					0.03590340585992635
LLDKWVEQ	8	Unmodified	_LLDKWVEQ_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-MATCH	A375_MHC_IP_R2	2		2	515.782025	1029.5495	-0.681	-0.00035125	-0.17642	-9.0994E-05	-0.85742	-0.00044224	515.7818609590614	42.919	0.91213	43.691	43.268	44.181	0.7724	-0.01852	-0.00016745	NaN	54.774	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7721100	+		31268	18742	22618	22783							0.03590340585992635
LLDLDEELRY	10	Unmodified	_LLDLDEELRY_					0	0	0		nc|ENSG00000119650|Q96FT9-3|IFT43;ENST00000554026.5_1_14:76452129-76542971:+|nuORF;nc|ENSG00000119650|Q96FT9-4|IFT43;ENST00000555305.5_1_14:76452129-76548711:+|nuORF;ENSG00000119650|ENST00000314067|IFT43;nc|ENSG00000119650|Q96FT9-2|IFT43	nc|ENSG00000119650|Q96FT9-3|IFT43	nc|ENSG00000119650|Q96FT9-3|IFT43	MULTI-MSMS	A375_MHC_IP_R1	1	640.2315673828125	2	639.832443	1277.65033	-0.62418	-0.00039937	0.030028	1.9213E-05	-0.59415	-0.00038016	639.832463510581	100.03	0.50481	100.03	99.774	100.28	0					21	9	3	0	0	0	0.028893	1	36748	36748		81.915	54.286	1	5463400			31269	3607	22619	22784	30531	30531					0.02261327778182931
LLDLDEELRY	10	Unmodified	_LLDLDEELRY_					0	0	0		nc|ENSG00000119650|Q96FT9-3|IFT43;ENST00000554026.5_1_14:76452129-76542971:+|nuORF;nc|ENSG00000119650|Q96FT9-4|IFT43;ENST00000555305.5_1_14:76452129-76548711:+|nuORF;ENSG00000119650|ENST00000314067|IFT43;nc|ENSG00000119650|Q96FT9-2|IFT43	nc|ENSG00000119650|Q96FT9-3|IFT43	nc|ENSG00000119650|Q96FT9-3|IFT43	MULTI-MSMS	A375_MHC_IP_R2	2	640.2323608398438	2	639.832443	1277.65033	-0.55988	-0.00035823	0.41281	0.00026413	-0.14707	-9.4099E-05	639.8323995680206	99.318	0.6105	100.08	99.657	100.27	0.75977					24	11	4	0	0	0	0.051218	1	37652	37652		75.571	47.942	1	4344700			31270	3607	22619	22784	30532	30532					0.02261327778182931
LLDLGNEDLN	10	Unmodified	_LLDLGNEDLN_					0	0	0			REV__nc|ENSG00000170312|P06493-2|CDK1	REV__nc|ENSG00000170312|P06493-2|CDK1	MSMS	A375_MHC_IP_R2	2	558.2301025390625	2	558.282586	1114.55062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.55	1	133.72	133.22	134.22	0.16487								0	0	0	0.15308	1	52538	52538		10.824	0.64053	1		+		31271	20983	22620	22785	30533	30533					-0.0020748983574776503
LLDLKPELAAQ	11	Unmodified	_LLDLKPELAAQ_					0	0	0			REV__nc|ENSG00000108465|Q96JB5-3|CDK5RAP3	REV__nc|ENSG00000108465|Q96JB5-3|CDK5RAP3	MULTI-MSMS	A375_MHC_IP_R2	2	606.2554321289062	2	605.855721	1209.69689	-0.26374	-0.00015979	0.17345	0.00010509	-0.090282	-5.4698E-05	605.8555386027182	116.59	0.50787	117.25	117.07	117.58	0.65962					20	9	3	0	0	0	0.45155	1	44074	44074		34.932	3.6637	1	19572000	+		31272	17533	22621	22786	30534	30534					0.10042812400138246
LLDLKPELAAQ	11	Unmodified	_LLDLKPELAAQ_					0	0	0			REV__nc|ENSG00000108465|Q96JB5-3|CDK5RAP3	REV__nc|ENSG00000108465|Q96JB5-3|CDK5RAP3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	605.855721	1209.69689	-0.26374	-0.00015979	0.17345	0.00010509	-0.090282	-5.4698E-05	605.8555386027182	116.59	0.50787	117.25	117.07	117.58	0.65962	-0.040785	0.00060698	NaN	34.932	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19572000	+		31273	17533	22621	22786							0.10042812400138246
LLDMKPRYHL	10	Unmodified	_LLDMKPRYHL_					0	0	0			REV__ENST00000430644.5_1_4:728709-759864:+|nuORF	REV__ENST00000430644.5_1_4:728709-759864:+|nuORF	MSMS	A375_MHC_IP_R1	1	429.1836853027344	3	429.241031	1284.70126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.199	1	87.199	86.699	87.699	0								0	0	0	0.15417	1	31992	31992		3.8763	1.6236	1		+		31274	21904	22622	22787	30535	30535					0.07029998342045474
LLDNFQSKDE	10	Unmodified	_LLDNFQSKDE_					0	0	0		DOCK3|p.P1852Qfs*45|1|0.39|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant;ENSG00000088538|ENST00000266037|DOCK3	DOCK3|p.P1852Qfs*45|1|0.39|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	DOCK3|p.P1852Qfs*45|1|0.39|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	605.1929321289062	2	604.793318	1207.57208	0.029164	1.7638E-05	0.14661	8.8668E-05	0.17577	0.00010631	604.7932117624048	48.394	0.86086	48.394	48.122	48.983	0					42	16	3	0	0	0	0.39599	1	17033	17033		34.402	0	1	19102000			31275	784	22623	22788	30536	30536					-0.023401048070127217
LLDNFQSKDE	10	Unmodified	_LLDNFQSKDE_					0	0	0		DOCK3|p.P1852Qfs*45|1|0.39|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant;ENSG00000088538|ENST00000266037|DOCK3	DOCK3|p.P1852Qfs*45|1|0.39|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	DOCK3|p.P1852Qfs*45|1|0.39|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	604.793318	1207.57208	0.029164	1.7638E-05	0.14661	8.8668E-05	0.17577	0.00010631	604.7932117624048	48.394	0.86086	48.394	48.122	48.983	0	-0.052974	-4.3555E-05	NaN	34.402	42	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19102000			31276	784	22623	22788							-0.023401048070127217
LLDNFQSKDE	10	Unmodified	_LLDNFQSKDE_					0	0	0		DOCK3|p.P1852Qfs*45|1|0.39|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant;ENSG00000088538|ENST00000266037|DOCK3	DOCK3|p.P1852Qfs*45|1|0.39|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	DOCK3|p.P1852Qfs*45|1|0.39|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	604.793318	1207.57208	-0.30627	-0.00018523	0.27412	0.00016579	-0.032146	-1.9442E-05	604.7930208006833	47.739	0.70861	48.5	48.174	48.883	0.76127	0.052974	0.00011068	NaN	34.402	36	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14077000			31277	784	22623	22788							-0.023401048070127217
LLDNSYYEQY	10	Unmodified	_LLDNSYYEQY_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	MULTI-SECPEP	A375_MHC_IP_R1	1	654.6927490234375	2	654.29315	1306.57175	-0.51677	-0.00033812	0.14819	9.6958E-05	-0.36858	-0.00024116	654.2932954621225	80.213	0.40643	80.213	80.034	80.441	0					10	7	2	0	0	0	0.61429	1	29319	29319		37.974	20.861	1	2210900			31278	9513	22624	22789	30537	30537					-0.06927524526895468
LLDNTDIHL	9	Unmodified	_LLDNTDIHL_					0	0	0		ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2	ENSG00000102910|ENST00000285737|LONP2	ENSG00000102910|ENST00000285737|LONP2	MULTI-SECPEP	A375_MHC_IP_R1	1	527.7056884765625	2	527.282389	1052.55022	-0.43299	-0.00022831	-0.052874	-2.7879E-05	-0.48586	-0.00025619	527.2824844621141	79.392	0.51462	79.392	79.161	79.676	0					17	9	2	0	0	0	0.083712	1	28954	28954		65.235	15.302	1	2958300			31279	2402	22625	22790	30538	30538					0.026051352350577872
LLDNTDIHL	9	Unmodified	_LLDNTDIHL_					0	0	0		ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2	ENSG00000102910|ENST00000285737|LONP2	ENSG00000102910|ENST00000285737|LONP2	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6492309570312	2	527.282389	1052.55022	-0.41708	-0.00021992	-0.3685	-0.0001943	-0.78558	-0.00041422	527.2821952632745	78.583	0.60942	79.328	79.084	79.693	0.74474					17	11	2	0	0	0	0.11711	1	29837	29837		60.074	14.053	1	3340600			31280	2402	22625	22790	30539	30539					0.026051352350577872
LLDPAQRTLY	10	Unmodified	_LLDPAQRTLY_					0	0	0		nc|ENSG00000130544|Q8N988|ZNF557;ENSG00000130544|ENST00000252840|ZNF557;ENST00000597304.5_1_19:8921959-8932201:-|nuORF;ENSG00000167785|ENST00000601372|ZNF558	nc|ENSG00000130544|Q8N988|ZNF557	nc|ENSG00000130544|Q8N988|ZNF557	MULTI-SECPEP	A375_MHC_IP_R1	1	595.731689453125	2	595.332413	1188.65027	-0.53453	-0.00031822	0.44204	0.00026316	-0.092488	-5.5061E-05	595.3326317220716	65.778	0.71037	65.778	65.514	66.224	0					27	13	3	0	0	0	0.68214	1	23830	23830		37.771	18.409	1	2904300			31281	4254	22626	22791	30540	30540					0.06349372568865874
LLDPAQRTLY	10	Unmodified	_LLDPAQRTLY_					0	0	0		nc|ENSG00000130544|Q8N988|ZNF557;ENSG00000130544|ENST00000252840|ZNF557;ENST00000597304.5_1_19:8921959-8932201:-|nuORF;ENSG00000167785|ENST00000601372|ZNF558	nc|ENSG00000130544|Q8N988|ZNF557	nc|ENSG00000130544|Q8N988|ZNF557	MULTI-SECPEP	A375_MHC_IP_R2	2	595.7321166992188	2	595.332413	1188.65027	-0.60862	-0.00036233	0.26739	0.00015918	-0.34124	-0.00020315	595.3326328758196	65.003	0.55814	65.741	65.511	66.069	0.73811					21	10	3	0	0	0	0.51228	1	24631	24631		49.742	24.751	1	3770300			31282	4254	22626	22791	30541	30541					0.06349372568865874
LLDPAQTGFY	10	Unmodified	_LLDPAQTGFY_					0	0	0		nc|ENSG00000162714|Q96IT1-2|ZNF496;ENSG00000162714|ENST00000682384|ZNF496;ENST00000462139.1_1_1:247473617-247473770:-|nuORF	nc|ENSG00000162714|Q96IT1-2|ZNF496	nc|ENSG00000162714|Q96IT1-2|ZNF496	MULTI-SECPEP	A375_MHC_IP_R1	1	563.18505859375	2	562.784764	1123.55498	-0.40904	-0.0002302	0.36023	0.00020273	-0.04881	-2.747E-05	562.7852195514658	103.42	0.8662	103.42	102.96	103.83	0					22	16	2	0	0	0	0.17899	1	37984	37984		65.474	27.5	1	1444900			31283	6580	22627	22792	30542	30542					-0.0018598062217733968
LLDPAQTGFY	10	Unmodified	_LLDPAQTGFY_					0	0	0		nc|ENSG00000162714|Q96IT1-2|ZNF496;ENSG00000162714|ENST00000682384|ZNF496;ENST00000462139.1_1_1:247473617-247473770:-|nuORF	nc|ENSG00000162714|Q96IT1-2|ZNF496	nc|ENSG00000162714|Q96IT1-2|ZNF496	MULTI-SECPEP	A375_MHC_IP_R2	2	563.184326171875	2	562.784764	1123.55498	-0.54698	-0.00030783	-0.34536	-0.00019436	-0.89234	-0.00050219	562.7847545261651	102.72	0.81416	103.49	103.18	103.99	0.76428					21	15	2	0	0	0	0.20175	1	38909	38909		70.332	35.93	1	1571100			31284	6580	22627	22792	30543	30543					-0.0018598062217733968
LLDPASFEY	9	Unmodified	_LLDPASFEY_					0	0	0		ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	MULTI-MSMS	A375_MHC_IP_R1	1	1055.46630859375	1	1054.50915	1053.50188	0.45699	0.0004819	0.26778	0.00028237	0.72477	0.00076427	1054.509420982524	112.35	0.612	112.35	112.08	112.69	0					31	11	3	0	0	0	0.018546	1	41184	41184		85.272	56.785	1	21018000			31285	2599	22628	22793	30544	30544					-0.022733584048410194
LLDPASFEY	9	Unmodified	_LLDPASFEY_					0	0	0		ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	MULTI-MSMS	A375_MHC_IP_R2	2	1054.9090576171875	1	1054.50915	1053.50188	0.25213	0.00026587	-0.014376	-1.516E-05	0.23775	0.00025071	1054.509088275089	111.74	0.61427	112.46	112.05	112.66	0.72458					29	11	3	0	0	0	0.018546	1	42192	42192		85.272	51.17	1	23173000			31286	2599	22628	22793	30545	30545					-0.022733584048410194
LLDPGQRNIY	10	Unmodified	_LLDPGQRNIY_					0	0	0		ZNF490|p.G284Efs*11|1|0.33|ENSG00000188033|chr19:12581224-12581224|C/-|frameshift_variant;ENSG00000188033|ENST00000311437|ZNF490	ZNF490|p.G284Efs*11|1|0.33|ENSG00000188033|chr19:12581224-12581224|C/-|frameshift_variant	ZNF490|p.G284Efs*11|1|0.33|ENSG00000188033|chr19:12581224-12581224|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	595.2216796875	2	594.822212	1187.62987	-0.98604	-0.00058652	1.4962	0.00088997	0.51015	0.00030345	594.8224394007505	53.897	1.0707	54.648	54.249	55.32	0.75105					26	20	2	0	0	0	0.66604	1	20298	20298		32.037	20.543	1	5397400			31287	8876	22629	22794	30546	30546					0.04356201909035917
LLDPKYGMFRY	11	Unmodified	_LLDPKYGMFRY_					0	0	0		nc|ENSG00000148634|Q5GLZ8-6|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000427635.6_1_10:69682690-69747802:-|nuORF;ENST00000480158.1_1_10:69714333-69714887:-|nuORF	nc|ENSG00000148634|Q5GLZ8-6|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-MSMS	A375_MHC_IP_R1	1	468.64434814453125	3	468.244441	1401.71149	-0.2615	-0.00012244	-0.077133	-3.6117E-05	-0.33863	-0.00015856	468.2446910215803	77.67	0.86447	77.67	77.286	78.15	0					27	16	3	0	0	0	0.72513	1	28430	28430		13.535	10.179	1	1896100			31288	5755	22630	22795	30547	30547					0.026705612766136255
LLDPKYGMFRY	11	Unmodified	_LLDPKYGMFRY_					0	0	0		nc|ENSG00000148634|Q5GLZ8-6|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000427635.6_1_10:69682690-69747802:-|nuORF;ENST00000480158.1_1_10:69714333-69714887:-|nuORF	nc|ENSG00000148634|Q5GLZ8-6|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-MSMS	A375_MHC_IP_R2	2	468.64471435546875	3	468.244441	1401.71149	-0.62523	-0.00029276	0.57373	0.00026864	-0.051502	-2.4115E-05	468.24483108206294	77.022	0.75944	77.765	77.354	78.113	0.74293					21	14	2	0	0	0	0.72515	1	29185	29185		13.519	2.0008	1	2467500			31289	5755	22630	22795	30548	30548					0.026705612766136255
LLDPLLLSTDP	11	Unmodified	_LLDPLLLSTDP_					0	0	0			REV__ENST00000489327.1_1_2:69705990-69736406:-|nuORF	REV__ENST00000489327.1_1_2:69705990-69736406:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	598.1502075195312	2	598.842279	1195.67001	-0.63083	-0.00037776	-0.42629	-0.00025528	-1.0571	-0.00063305	598.8420620876432	65.306	0.45683	66.044	65.715	66.172	0.73811					11	8	2	0	0	0	0.99227	1	24754	24754		1.1933	0	1	1163600	+		31290	17927	22631	22796	30549	30549					0.07999703788959778
LLDPNPHMY	9	Unmodified	_LLDPNPHMY_					0	0	0		ENSG00000091844|ENST00000206262|RGS17	ENSG00000091844|ENST00000206262|RGS17	ENSG00000091844|ENST00000206262|RGS17	MULTI-MSMS	A375_MHC_IP_R1	1	550.6974487304688	2	550.265684	1098.51682	-0.5199	-0.00028608	0.36469	0.00020068	-0.1552	-8.5403E-05	550.26566871314	59.922	0.45811	59.922	59.599	60.057	0					17	8	3	0	0	0	0.46038	1	21513	21513		21.747	3.6117	1	2422300			31291	1987	22632	22797	30550	30550					-0.0285018980850964
LLDPNPHMY	9	Unmodified	_LLDPNPHMY_					0	0	0		ENSG00000091844|ENST00000206262|RGS17	ENSG00000091844|ENST00000206262|RGS17	ENSG00000091844|ENST00000206262|RGS17	MULTI-MSMS	A375_MHC_IP_R2	2	550.6650390625	2	550.265684	1098.51682	-1.1849	-0.00065201	-0.014216	-7.8224E-06	-1.1991	-0.00065984	550.2656739382345	59.091	0.50666	59.838	59.641	60.148	0.74714					15	9	2	0	0	0	0.35581	1	22377	22377		26.884	8.7487	1	2754700			31292	1987	22632	22797	30551	30551					-0.0285018980850964
LLDPNPHMY	9	Unmodified	_LLDPNPHMY_					0	0	0		ENSG00000091844|ENST00000206262|RGS17	ENSG00000091844|ENST00000206262|RGS17	ENSG00000091844|ENST00000206262|RGS17	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	550.265684	1098.51682	-0.5199	-0.00028608	0.36469	0.00020068	-0.1552	-8.5403E-05	550.26566871314	59.922	0.45811	59.922	59.599	60.057	0	0.042012	0.00036084	NaN	26.884	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2422300			31293	1987	22632	22797							-0.0285018980850964
LLDPNPHMY	9	Oxidation (M)	_LLDPNPHM(Oxidation (M))Y_		LLDPNPHM(1)Y		LLDPNPHM(42)Y	0	0	1		ENSG00000091844|ENST00000206262|RGS17	ENSG00000091844|ENST00000206262|RGS17	ENSG00000091844|ENST00000206262|RGS17	MULTI-SECPEP	A375_MHC_IP_R2	2	558.6631469726562	2	558.263142	1114.51173	-0.53096	-0.00029641	0.047909	2.6746E-05	-0.48305	-0.00026967	558.263166952499	43.75	0.4538	44.52	44.278	44.732	0.7691					14	8	2	0	0	0	0.38578	1	16335	16335		41.84	27.934	1	2911000			31294	1987	22632	22798	30552	30552		71			-0.04094493671118471
LLDPNVKSIFV	11	Unmodified	_LLDPNVKSIFV_					0	0	0		ENSG00000117419|ENST00000372257|ERI3;nc|ENSG00000117419|O43414-2|ERI3;nc|ENSG00000117419|O43414-3|ERI3	ENSG00000117419|ENST00000372257|ERI3	ENSG00000117419|ENST00000372257|ERI3	MULTI-SECPEP	A375_MHC_IP_R1	1	623.2185668945312	2	622.866089	1243.71762	-0.45379	-0.00028265	0.64703	0.00040301	0.19324	0.00012036	622.8662763894104	103.95	0.76369	103.95	103.68	104.44	0					32	14	3	0	0	0	0.12543	1	38214	38214		74.772	23.357	1	9390600			31295	3483	22633	22799	30553	30553					0.10551402779788077
LLDPNVKSIFV	11	Unmodified	_LLDPNVKSIFV_					0	0	0		ENSG00000117419|ENST00000372257|ERI3;nc|ENSG00000117419|O43414-2|ERI3;nc|ENSG00000117419|O43414-3|ERI3	ENSG00000117419|ENST00000372257|ERI3	ENSG00000117419|ENST00000372257|ERI3	MULTI-SECPEP	A375_MHC_IP_R2	2	623.2654418945312	2	622.866089	1243.71762	-0.73633	-0.00045863	-0.34236	-0.00021324	-1.0787	-0.00067188	622.8657682182666	103.13	0.61087	103.9	103.58	104.19	0.76428					30	11	4	0	0	0	0.084624	1	39052	39052		82.445	51.177	1	7819700			31296	3483	22633	22799	30554	30554					0.10551402779788077
LLDPRFEGY	9	Unmodified	_LLDPRFEGY_					0	0	0		ENSG00000120526|ENST00000239690|NUDCD1	ENSG00000120526|ENST00000239690|NUDCD1	ENSG00000120526|ENST00000239690|NUDCD1	MULTI-MSMS	A375_MHC_IP_R1	1	555.2041015625	2	555.284931	1108.55531	-0.59718	-0.0003316	-0.31354	-0.00017411	-0.91072	-0.00050571	555.2851417782981	76.042	0.55519	76.042	75.815	76.37	0					16	10	2	0	0	0	0.54799	1	27755	27755		24.021	1.2843	1	3598000			31297	3667	22634	22800	30555	30555					0.0053743909768400044
LLDPRFEGY	9	Unmodified	_LLDPRFEGY_					0	0	0		ENSG00000120526|ENST00000239690|NUDCD1	ENSG00000120526|ENST00000239690|NUDCD1	ENSG00000120526|ENST00000239690|NUDCD1	MULTI-SECPEP	A375_MHC_IP_R2	2	555.957763671875	2	555.284931	1108.55531	-0.80035	-0.00044442	-0.90769	-0.00050403	-1.708	-0.00094845	555.2847142073495	75.34	0.71274	76.08	75.775	76.487	0.74052					25	13	3	0	0	0	0.51395	1	28601	28601		31.268	31.268	1	4177700			31298	3667	22634	22800	30556	30556					0.0053743909768400044
LLDPRFEGY	9	Unmodified	_LLDPRFEGY_					0	0	0		ENSG00000120526|ENST00000239690|NUDCD1	ENSG00000120526|ENST00000239690|NUDCD1	ENSG00000120526|ENST00000239690|NUDCD1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	555.284931	1108.55531	-0.59718	-0.0003316	-0.31354	-0.00017411	-0.91072	-0.00050571	555.2851417782981	76.042	0.55519	76.042	75.815	76.37	0	-0.01914	0.00028507	NaN	31.268	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3598000			31299	3667	22634	22800							0.0053743909768400044
LLDPRIYY	8	Unmodified	_LLDPRIYY_					0	0	0		RGPD5-MALL|1|fusion;ENSG00000144063|ENST00000272462|MALL;ENST00000568189.5_1_2:111003217-111043255:+|nuORF	RGPD5-MALL|1|fusion	RGPD5-MALL|1|fusion	MULTI-MSMS	A375_MHC_IP_R1	1	526.9539184570312	2	526.792392	1051.57023	0.0077122	4.0628E-06	-3.4912	-0.0018392	-3.4835	-0.0018351	526.7907084274834	49.008	0.7092	49.008	48.831	49.54	0					17	13	2	0	0	0	0.7758	1	17493	17493		10.183	1.5901	1	2189700			31300	5462	22635	22801	30557	30557					0.0465093096563578
LLDPRSELLLT	11	Unmodified	_LLDPRSELLLT_					0	0	0			REV__nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	REV__nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	MULTI-SECPEP	A375_MHC_IP_R2	2	635.7733764648438	2	635.374278	1268.734	-0.59703	-0.00037934	0.011922	7.5747E-06	-0.58511	-0.00037176	635.3741374534527	143.03	0.96156	143.06	142.58	143.54	0.030731					62	18	5	0	0	0	0.99955	1	55782	55782		1.1933	1.1933	1	29679000	+		31301	18965	22636	22802	30558	30558					0.11038483945912958
LLDPSQKNLY	10	Unmodified	_LLDPSQKNLY_					0	0	0		ENSG00000196646|ENST00000343979|ZNF136;ENST00000464860.1_1_19:12296590-12298813:+|nuORF;ENST00000476676.1_1_19:12296653-12296758:+|nuORF;nc|ENSG00000214189|Q6ZQV5-2|ZNF788P;ENST00000478942.5_1_19:12246557-12251057:-|nuORF;nc|ENSG00000214189|Q6ZQV5|ZNF788P;ENST00000480770.5_3_19:12241465-12247683:-|nuORF;ENST00000539098.5_1_12:133618053-133624816:+|nuORF;ZNF625|p.N113Pfs*2|1|0.38|ENSG00000257591|chr19:12146080-12146081|-/AGGG|frameshift_variant;ENST00000543124.1_1_12:133624462-133624816:+|nuORF;ENSG00000257591|ENST00000439556|ZNF625;ENSG00000277462|ENST00000366503|ZNF670;ENSG00000132010|ENST00000334213|ZNF20;ENSG00000198040|ENST00000539354|ZNF84;ENSG00000198551|ENST00000361113|ZNF627;ENSG00000257446|ENST00000547628|ZNF878;nc|ENSG00000196418|Q15973-5|ZNF124;nc|ENSG00000196418|Q15973-4|ZNF124;ZNF124|p.T339Nfs*9|1|0.57|ENSG00000196418|chr1:247156606-247156607|-/T|frameshift_variant;ENSG00000196418|ENST00000543802|ZNF124;ENSG00000223547|ENST00000439326|ZNF844	ENSG00000196646|ENST00000343979|ZNF136;ENSG00000198551|ENST00000361113|ZNF627;ENSG00000257446|ENST00000547628|ZNF878	ENSG00000198551|ENST00000361113|ZNF627	MULTI-SECPEP	A375_MHC_IP_R1	1	596.2245483398438	2	595.824421	1189.63429	-0.28857	-0.00017193	0.16041	9.5577E-05	-0.12815	-7.6357E-05	595.8244782898086	56.58	1.0184	56.58	56.244	57.263	0					52	19	4	0	0	0	0.00013733	1	20236	20236		189.73	114.8	1	46426000			31302	9068;9281;9910	22637	22803	30559	30559					0.04705666331960856
LLDPSQKNLY	10	Unmodified	_LLDPSQKNLY_					0	0	0		ENSG00000196646|ENST00000343979|ZNF136;ENST00000464860.1_1_19:12296590-12298813:+|nuORF;ENST00000476676.1_1_19:12296653-12296758:+|nuORF;nc|ENSG00000214189|Q6ZQV5-2|ZNF788P;ENST00000478942.5_1_19:12246557-12251057:-|nuORF;nc|ENSG00000214189|Q6ZQV5|ZNF788P;ENST00000480770.5_3_19:12241465-12247683:-|nuORF;ENST00000539098.5_1_12:133618053-133624816:+|nuORF;ZNF625|p.N113Pfs*2|1|0.38|ENSG00000257591|chr19:12146080-12146081|-/AGGG|frameshift_variant;ENST00000543124.1_1_12:133624462-133624816:+|nuORF;ENSG00000257591|ENST00000439556|ZNF625;ENSG00000277462|ENST00000366503|ZNF670;ENSG00000132010|ENST00000334213|ZNF20;ENSG00000198040|ENST00000539354|ZNF84;ENSG00000198551|ENST00000361113|ZNF627;ENSG00000257446|ENST00000547628|ZNF878;nc|ENSG00000196418|Q15973-5|ZNF124;nc|ENSG00000196418|Q15973-4|ZNF124;ZNF124|p.T339Nfs*9|1|0.57|ENSG00000196418|chr1:247156606-247156607|-/T|frameshift_variant;ENSG00000196418|ENST00000543802|ZNF124;ENSG00000223547|ENST00000439326|ZNF844	ENSG00000196646|ENST00000343979|ZNF136;ENSG00000198551|ENST00000361113|ZNF627;ENSG00000257446|ENST00000547628|ZNF878	ENSG00000198551|ENST00000361113|ZNF627	MULTI-SECPEP	A375_MHC_IP_R2	2	596.2237548828125	2	595.824421	1189.63429	-0.71612	-0.00042668	0.25414	0.00015143	-0.46197	-0.00027525	595.8245739421575	55.866	0.96843	56.616	56.287	57.255	0.75015					54	18	5	0	0	0	0.0061622	1	21060	21060		176.43	93.898	1	62491000			31303	9068;9281;9910	22637	22803	30560	30560					0.04705666331960856
LLDPSQRDLY	10	Unmodified	_LLDPSQRDLY_					0	0	0		nc|ENSG00000170100|Q96MU6|ZNF778;ENSG00000170100|ENST00000433976|ZNF778	nc|ENSG00000170100|Q96MU6|ZNF778	nc|ENSG00000170100|Q96MU6|ZNF778	MULTI-SECPEP	A375_MHC_IP_R1	1	610.5839233398438	2	610.319502	1218.62445	-0.23185	-0.0001415	-1.1718	-0.00071519	-1.4037	-0.0008567	610.3185229609753	62.36	0.40859	62.36	62.097	62.505	0					10	7	2	0	0	0	0.84881	1	22526	22526		22.658	5.7158	1	1159900			31304	7472	22638	22804	30561	30561					0.02388478326565746
LLDPSRSYSY	10	Unmodified	_LLDPSRSYSY_					0	0	0		nc|ENSG00000141441|Q9H706-3|GAREM1;nc|ENSG00000141441|Q9H706-2|GAREM1;ENSG00000141441|ENST00000269209|GAREM1	nc|ENSG00000141441|Q9H706-3|GAREM1	nc|ENSG00000141441|Q9H706-3|GAREM1	MULTI-MSMS	A375_MHC_IP_R2	2	601.1978759765625	2	600.798403	1199.58225	-0.76549	-0.0004599	0.40034	0.00024052	-0.36515	-0.00021938	600.7986776525753	54.241	0.50625	54.992	54.763	55.269	0.75075					12	9	2	0	0	0	0.35113	1	20503	20503		37.075	6.4381	1	1669100			31305	14645	22639	22805	30562	30562					-0.00955497081804424
LLDPSVFHV	9	Unmodified	_LLDPSVFHV_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L;ENST00000538784.2_1_12:132635515-132636943:+|nuORF	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	MULTI-SECPEP	A375_MHC_IP_R1	1	514.1843872070312	2	513.784567	1025.55458	-0.45874	-0.0002357	0.27784	0.00014275	-0.1809	-9.2945E-05	513.7845774660805	100.92	1.519	100.92	100.53	102.05	0					70	29	4	0	0	0	0.043556	1	37056	37056		77.984	35.89	1	30948000			31306	8623	22640	22806	30563	30563					0.04282644448608153
LLDPSVFHV	9	Unmodified	_LLDPSVFHV_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L;ENST00000538784.2_1_12:132635515-132636943:+|nuORF	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	MULTI-MSMS	A375_MHC_IP_R2	2	514.1846313476562	2	513.784567	1025.55458	-0.5374	-0.00027611	0.10143	5.2113E-05	-0.43597	-0.00022399	513.7845580694692	100.09	1.2243	100.85	100.42	101.65	0.76278					63	23	4	0	0	0	0.03497	1	37907	37907		70.716	26.309	1	32372000			31307	8623	22640	22806	30564	30564					0.04282644448608153
LLDPSVFHV	9	Unmodified	_LLDPSVFHV_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L;ENST00000538784.2_1_12:132635515-132636943:+|nuORF	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	MULTI-SECPEP	A375_MHC_IP_R2	2	513.6507568359375	2	513.784567	1025.55458	-0.63237	-0.0003249	0.42329	0.00021748	-0.20909	-0.00010743	514.28632184536	101.19	0.61422	101.96	101.55	102.16	0.76428					14	11	2	0	0	0	0.3607	1	38307	38307		42.095	6.0504	1	3058500			31308	8623	22640	22806	30565	30565					0.04282644448608153
LLDPSVSSISY	11	Unmodified	_LLDPSVSSISY_					0	0	0		ENSG00000072657|ENST00000261180|TRHDE	ENSG00000072657|ENST00000261180|TRHDE	ENSG00000072657|ENST00000261180|TRHDE	MULTI-MSMS	A375_MHC_IP_R2	2	590.7307739257812	2	590.808436	1179.60232	-0.73195	-0.00043244	0.23558	0.00013919	-0.49636	-0.00029325	590.808330029722	97.343	0.71182	98.099	97.822	98.534	0.75586					15	13	2	0	0	0	0.1532	1	36978	36978		85.642	51.24	1	1301400			31309	1542	22641	22807	30566	30566					0.01970253858144133
LLDPTKPPSL	10	Unmodified	_LLDPTKPPSL_					0	0	0		ULBP1|p.M204L|1|0.48|ENSG00000111981|chr6:149969345-149969345|A/T|missense_variant	ULBP1|p.M204L|1|0.48|ENSG00000111981|chr6:149969345-149969345|A/T|missense_variant	ULBP1|p.M204L|1|0.48|ENSG00000111981|chr6:149969345-149969345|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	540.693603515625	2	540.818607	1079.62266	-0.61078	-0.00033032	0.99893	0.00054024	0.38815	0.00020992	540.8191185603476	77.545	0.86447	77.545	77.286	78.15	0					24	16	3	0	0	0	0.6774	1	28519	28519		34.402	8.1336	1	2267000			31310	30117	22642	22808	30567	30567					0.08603469308627609
LLDPTQKALY	10	Unmodified	_LLDPTQKALY_					0	0	0		nc|ENSG00000162086|Q96N20|ZNF75A;ENSG00000162086|ENST00000669516|ZNF75A	nc|ENSG00000162086|Q96N20|ZNF75A	nc|ENSG00000162086|Q96N20|ZNF75A	MULTI-SECPEP	A375_MHC_IP_R1	1	581.23681640625	2	581.329339	1160.64412	-0.35461	-0.00020615	-0.29199	-0.00016974	-0.6466	-0.00037589	581.3290754218699	65.767	0.40692	65.767	65.514	65.921	0					11	7	2	0	0	0	0.87043	1	23794	23794		20.415	8.1739	1	1123600			31311	6506	22643	22809	30568	30568					0.07022854337333229
LLDQDDSYE	9	Unmodified	_LLDQDDSYE_					0	0	0		nc|ENSG00000136848|Q5VWQ8-5|DAB2IP	nc|ENSG00000136848|Q5VWQ8-5|DAB2IP	nc|ENSG00000136848|Q5VWQ8-5|DAB2IP	MULTI-MSMS	A375_MHC_IP_R2	2	549.6344604492188	2	549.235301	1096.45605	-0.72274	-0.00039695	-0.20404	-0.00011206	-0.92677	-0.00050902	549.2349427937955	104.82	0.96693	105.58	105.16	106.12	0.76308					38	18	3	0	0	0	0.68216	1	39628	39628		8.5933	0	1	4031500			31312	14621	22644	22810	30569	30569					-0.08832048377757928
LLDQDDSYE	9	Unmodified	_LLDQDDSYE_					0	0	0		nc|ENSG00000136848|Q5VWQ8-5|DAB2IP	nc|ENSG00000136848|Q5VWQ8-5|DAB2IP	nc|ENSG00000136848|Q5VWQ8-5|DAB2IP	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	549.235301	1096.45605	-0.42037	-0.00023088	-0.0043121	-2.3684E-06	-0.42469	-0.00023325	549.23521259351	105.45	0.86294	105.45	105.3	106.16	0	-0.067399	0.00011382	NaN	8.5933	18	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2936200			31313	14621	22644	22810							-0.08832048377757928
LLDQDDSYE	9	Unmodified	_LLDQDDSYE_					0	0	0		nc|ENSG00000136848|Q5VWQ8-5|DAB2IP	nc|ENSG00000136848|Q5VWQ8-5|DAB2IP	nc|ENSG00000136848|Q5VWQ8-5|DAB2IP	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	549.235301	1096.45605	-0.72274	-0.00039695	-0.20404	-0.00011206	-0.92677	-0.00050902	549.2349427937955	104.82	0.96693	105.58	105.16	106.12	0.76308	0.067399	-0.00010558	NaN	8.5933	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4031500			31314	14621	22644	22810							-0.08832048377757928
LLDQGQLNKY	10	Unmodified	_LLDQGQLNKY_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	A375_MHC_IP_R1	1	596.7217407226562	2	596.322045	1190.62954	-0.34981	-0.0002086	0.095843	5.7153E-05	-0.25396	-0.00015144	596.3220970041426	50.176	0.92086	50.176	49.743	50.663	0					49	17	5	0	0	0	0.032847	1	17710	17710		147.24	85.639	1	89517000			31315	5230	22645	22811	30570	30570					0.04184782189190628
LLDQGQLNKY	10	Unmodified	_LLDQGQLNKY_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	A375_MHC_IP_R2	2	596.6927490234375	2	596.322045	1190.62954	-0.84944	-0.00050654	0.18435	0.00010993	-0.66509	-0.00039661	596.3221197632168	49.464	1.0653	50.222	49.792	50.857	0.75736					60	20	5	0	0	0	0.018369	1	18574	18574		187.14	123.18	1	83155000			31316	5230	22645	22811	30571	30571					0.04184782189190628
LLDQTWRAR	9	Unmodified	_LLDQTWRAR_					0	0	0			REV__ENST00000202017.5_1_20:30533323-30533467:-|nuORF	REV__ENST00000202017.5_1_20:30533323-30533467:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	386.6352233886719	3	386.884123	1157.63054	0.50088	0.00019378	-1.4852	-0.0005746	-0.98432	-0.00038082	386.8838135520027	21.554	0.25251	21.554	21.454	21.706	0					10	4	3	0	0	0	0.78719	1	5699	5699		3.3196	0	1	1206000	+		31317	23023	22646	22812	30572	30572					0.0580304134873586
LLDRCGVF	8	Unmodified	_LLDRCGVF_					0	0	0		ENSG00000175215|ENST00000398073|CTDSP2	ENSG00000175215|ENST00000398073|CTDSP2	ENSG00000175215|ENST00000398073|CTDSP2	MULTI-SECPEP	A375_MHC_IP_R2	2	462.14459228515625	2	461.744388	921.474223	-0.21718	-0.00010028	1.122	0.00051809	0.90485	0.00041781	461.74483601128236	94.993	0.55769	95.743	95.432	95.99	0.75044					18	10	2	0	0	0	0.94479	1	36073	36073		19.439	0	1	2615200			31318	7940	22647	22813	30573	30573					0.010344598539177241
LLDRCGVF	8	Unmodified	_LLDRCGVF_					0	0	0		ENSG00000175215|ENST00000398073|CTDSP2	ENSG00000175215|ENST00000398073|CTDSP2	ENSG00000175215|ENST00000398073|CTDSP2	MULTI-MATCH	A375_MHC_IP_R1	1		2	461.744388	921.474223	-0.28177	-0.00013011	1.0727	0.00049532	0.79094	0.00036521	461.74488675381235	95.792	0.50341	95.792	95.515	96.018	0	0.024428	-1.4675E-05	NaN	19.439	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3093700			31319	7940	22647	22813							0.010344598539177241
LLDRETFMKV	10	Unmodified	_LLDRETFMKV_					0	0	0			REV__ENSG00000058453|ENST00000375541|CROCC	REV__ENSG00000058453|ENST00000375541|CROCC	MSMS	A375_MHC_IP_R2	2	625.9425659179688	2	626.341923	1250.66929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.5	1	125.79	125.29	126.29	0.2951								0	0	0	0.15332	1	48956	48956		10.074	0.6908	1		+		31320	16433	22648	22814	30574	30574					0.05398585868238115
LLDRFLATV	9	Unmodified	_LLDRFLATV_					0	0	0		nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	MULTI-SECPEP	A375_MHC_IP_R1	1	524.7130737304688	2	524.313492	1046.61243	-0.45649	-0.00023935	-0.071032	-3.7243E-05	-0.52753	-0.00027659	524.3134502747636	103.7	1.0189	103.7	103.37	104.39	0					59	19	4	0	0	0	0.058501	1	38051	38051		87.258	27.184	1	28796000			31321	3561	22649	22815	30575	30575					0.09098906374038052
LLDRFLATV	9	Unmodified	_LLDRFLATV_					0	0	0		nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	MULTI-SECPEP	A375_MHC_IP_R2	2	524.7130126953125	2	524.313492	1046.61243	-0.51079	-0.00026782	-0.36533	-0.00019155	-0.87613	-0.00045936	524.313233050405	102.83	0.96696	103.59	103.18	104.14	0.76428					59	18	4	0	0	0	0.053555	1	38887	38887		90.135	21.03	1	34065000			31322	3561	22649	22815	30576	30576					0.09098906374038052
LLDRLDEKY	9	Unmodified	_LLDRLDEKY_					0	0	0			REV__nc|ENSG00000165115|Q86VH2-3|KIF27	REV__nc|ENSG00000165115|Q86VH2-3|KIF27	MULTI-MSMS	A375_MHC_IP_R1	1	583.105712890625	2	582.816596	1163.61864	-0.2384	-0.00013895	0.043324	2.525E-05	-0.19508	-0.0001137	582.8165359535759	50.635	0.60903	50.635	50.357	50.966	0					29	11	4	0	0	0	0.52197	1	18025	18025		19.362	0	1	12034000	+		31323	20548	22650	22816	30577	30577					0.04337379814887754
LLDRLKTLL	9	Unmodified	_LLDRLKTLL_					0	0	0			REV__ENSG00000047188|ENST00000161863|YTHDC2	REV__ENSG00000047188|ENST00000161863|YTHDC2	MULTI-SECPEP	A375_MHC_IP_R1	1	543.6443481445312	2	542.858067	1083.70158	-0.5916	-0.00032116	-1.041	-0.0005651	-1.6326	-0.00088626	542.8575810462878	81.56	0.40412	81.56	81.253	81.657	0					10	7	2	0	0	0	0.50702	1	29794	29794		13.906	0.86358	1	1426500	+		31324	16358	22651	22817	30578	30578					0.16307741333571357
LLDRLYEHY	9	Unmodified	_LLDRLYEHY_					0	0	0		ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MULTI-SECPEP	A375_MHC_IP_R1	1	408.280029296875	3	407.880267	1220.61897	-0.21514	-8.7752E-05	0.19654	8.0166E-05	-0.018598	-7.586E-06	407.8802504193042	58.055	0.60833	58.055	57.72	58.328	0					24	11	3	0	0	0	0.60917	1	20855	20855		18.373	12.181	1	2292200			31325	9248	22652	22818	30579	30579					0.01748799534743739
LLDRLYEHY	9	Unmodified	_LLDRLYEHY_					0	0	0		ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MULTI-SECPEP	A375_MHC_IP_R2	2	408.2798767089844	3	407.880267	1220.61897	-0.36741	-0.00014986	0.020118	8.2059E-06	-0.34729	-0.00014165	407.88017479666183	57.193	0.409	57.943	57.712	58.121	0.75015					13	7	2	0	0	0	0.13208	1	21642	21642		53.317	33.691	1	3109900			31326	9248	22652	22818	30580	30580					0.01748799534743739
LLDRQGVI	8	Unmodified	_LLDRQGVI_					0	0	0			REV__ENSG00000081923|ENST00000648908|ATP8B1	REV__ENSG00000081923|ENST00000648908|ATP8B1	MULTI-MSMS	A375_MHC_IP_R2	2	457.6763916015625	2	457.276909	912.539266	-0.22748	-0.00010402	-0.36027	-0.00016474	-0.58775	-0.00026876	457.2767081547395	63.593	0.61053	64.333	64.038	64.648	0.74022					21	11	2	0	0	0	0.66714	1	24086	24086		42.095	6.0504	1	4639000	+		31327	16782	22653	22819	30581	30581					0.07949777651424483
LLDRRWRIL	9	Unmodified	_LLDRRWRIL_					0	0	0			REV__ENST00000468437.1_1_1:84972483-84972516:+|nuORF	REV__ENST00000468437.1_1_1:84972483-84972516:+|nuORF	MSMS	A375_MHC_IP_R1	1	620.83984375	2	620.885481	1239.75641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.736	1	95.736	95.236	96.236	0								0	0	0	0.15486	1	35188	35188		4.756	0	1		+		31328	25083	22654	22820	30582	30582					0.14612172924830702
LLDSGAFHL	9	Unmodified	_LLDSGAFHL_					0	0	0		ENSG00000124217|ENST00000244051|MOCS3	ENSG00000124217|ENST00000244051|MOCS3	ENSG00000124217|ENST00000244051|MOCS3	MULTI-MSMS	A375_MHC_IP_R2	2	486.6810607910156	2	486.761092	971.507631	-0.49243	-0.0002397	0.86115	0.00041918	0.36872	0.00017948	486.76126138361536	90.502	0.45773	91.236	90.904	91.362	0.7345					12	8	2	0	0	0	0.098973	1	34388	34388		50.855	8.7605	1	999790			31329	3887	22655	22821	30583	30583					0.02073784897470432
LLDSLAIL	8	Unmodified	_LLDSLAIL_					0	0	0			REV__ENST00000416928.6_1_2:177040485-177040746:-|nuORF	REV__ENST00000416928.6_1_2:177040485-177040746:-|nuORF	MSMS	A375_MHC_IP_R2	2	429.1842041015625	2	429.270761	856.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.924	1	86.657	86.157	87.157	0.733								0	0	0	0.16876	1	32676	32676		15.768	4.6538	1		+		31330	24539	22656	22822	30584	30584					0.09296741188370561
LLDSLSLSLI	10	Unmodified	_LLDSLSLSLI_					0	0	0			REV__ENSG00000181619|ENST00000395116|GPR135	REV__ENSG00000181619|ENST00000395116|GPR135	MULTI-SECPEP	A375_MHC_IP_R1	1	537.70458984375	2	537.326265	1072.63798	-0.60959	-0.00032755	2.8208	0.0015157	2.2112	0.0011882	537.3272632955385	93.53	0.40822	93.53	93.329	93.738	0					9	7	2	0	0	0	0.52461	1	34363	34363		43.858	19.184	1	426340	+		31331	21660	22657	22823	30585	30585					0.10456336105835362
LLDSMYDV	8	Unmodified	_LLDSMYDV_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2;REV__FSIP2|p.T6548Lfs*12|1|0.3|ENSG00000188738|chr2:185808944-185808944|A/-|frameshift_variant	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	A375_MHC_IP_R1	1	478.6246643066406	2	478.225694	954.436834	-0.51475	-0.00024617	-2.3492	-0.0011234	-2.8639	-0.0013696	478.22525777980564	95.758	0.5026	95.758	95.465	95.968	0					20	9	3	0	0	0	0.70843	1	35195	35195		32.117	0	1	2328600	+		31332	22110;26655	22658	22824	30586	30586					-0.04220676202362483
LLDSMYDV	8	Unmodified	_LLDSMYDV_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2;REV__FSIP2|p.T6548Lfs*12|1|0.3|ENSG00000188738|chr2:185808944-185808944|A/-|frameshift_variant	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	478.1253356933594	2	478.225694	954.436834	-0.51475	-0.00024617	-2.3492	-0.0011234	-2.8639	-0.0013696	478.22525777980564	95.758	0.5026	95.758	95.465	95.968	0					20	9	3	0	0	0	0.91495	1	35235	35235		24.674	0	1	2328600	+		31333	22110;26655	22658	22824	30587	30587					-0.04220676202362483
LLDSMYDV	8	Unmodified	_LLDSMYDV_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2;REV__FSIP2|p.T6548Lfs*12|1|0.3|ENSG00000188738|chr2:185808944-185808944|A/-|frameshift_variant	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	478.225694	954.436834	-0.27531	-0.00013166	-2.3933	-0.0011445	-2.6686	-0.0012762	478.2248061921899	95.01	0.50666	95.76	95.483	95.99	0.75045	0.0013172	-1.4579E-05	NaN	32.117	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3216900	+		31334	22110;26655	22658	22824							-0.04220676202362483
LLDSPYARV	9	Unmodified	_LLDSPYARV_					0	0	0		ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	MULTI-SECPEP	A375_MHC_IP_R2	2	517.5587158203125	2	517.287474	1032.5604	-1.0683	-0.00055264	-0.97818	-0.000506	-2.0465	-0.0010586	517.287082685323	58.506	1.1156	59.255	58.679	59.795	0.74894					50	21	3	0	0	0	0.56537	1	22324	22324		17.113	0	1	11846000			31335	965	22659	22825	30588	30588					0.04541742960282136
LLDSRCDYSC	10	Unmodified	_LLDSRCDYSC_					0	0	0		ENSG00000102359|ENST00000373004|SRPX2	ENSG00000102359|ENST00000373004|SRPX2	ENSG00000102359|ENST00000373004|SRPX2	MSMS	A375_MHC_IP_R2	2	587.7265625	2	587.746998	1173.47944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.091	1	83.831	83.331	84.331	0.73962								0	0	0	0.15451	1	31576	31576		6.2058	1.3088	1				31336	2375	22660	22826	30589	30589					-0.1003564913644368
LLDSSGSHLY	10	Unmodified	_LLDSSGSHLY_					0	0	0		ENSG00000198753|ENST00000361971|PLXNB3;nc|ENSG00000198753|Q9ULL4-2|PLXNB3	ENSG00000198753|ENST00000361971|PLXNB3	ENSG00000198753|ENST00000361971|PLXNB3	MULTI-SECPEP	A375_MHC_IP_R1	1	546.671630859375	2	546.272021	1090.52949	-0.70498	-0.00038511	0.049446	2.7011E-05	-0.65553	-0.0003581	546.2721209230682	52.877	0.86204	52.877	52.643	53.505	0					25	16	3	0	0	0	0.38158	1	18807	18807		43.858	11.405	1	4770900			31337	9317	22661	22827	30590	30590					-0.012154551446201367
LLDSSLPTFL	10	Unmodified	_LLDSSLPTFL_					0	0	0		ENSG00000215529|ENST00000400522|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	MULTI-MSMS	A375_MHC_IP_R2	2	552.7055053710938	2	553.310615	1104.60668	-0.82898	-0.00045869	-0.75244	-0.00041634	-1.5814	-0.00087502	553.3104195032304	127.79	1.9277	128.05	127.16	129.09	0.26592					39	26	3	0	0	0	0.71946	1	49808	49808		6.7232	3.4419	1	15732000			31338	9647	22662	22828	30591	30591					0.05855763071713227
LLDSSQKNLY	10	Unmodified	_LLDSSQKNLY_					0	0	0		ENSG00000188295|ENST00000448299|ZNF669;nc|ENSG00000188295|Q96BR6|ZNF669	ENSG00000188295|ENST00000448299|ZNF669	ENSG00000188295|ENST00000448299|ZNF669	MULTI-SECPEP	A375_MHC_IP_R1	1	591.2140502929688	2	590.814053	1179.61355	-0.19254	-0.00011375	0.27156	0.00016044	0.079018	4.6685E-05	590.814165692751	47.693	0.5533	47.693	47.416	47.97	0					23	10	3	0	0	0	0.014532	1	16778	16778		171.46	123.12	1	12656000			31339	8897	22663	22829	30592	30592					0.030930759523016604
LLDSSQKNLY	10	Unmodified	_LLDSSQKNLY_					0	0	0		ENSG00000188295|ENST00000448299|ZNF669;nc|ENSG00000188295|Q96BR6|ZNF669	ENSG00000188295|ENST00000448299|ZNF669	ENSG00000188295|ENST00000448299|ZNF669	MULTI-SECPEP	A375_MHC_IP_R2	2	591.2141723632812	2	590.814053	1179.61355	-0.36315	-0.00021455	0.45642	0.00026966	0.093273	5.5107E-05	590.8141629556687	46.981	0.66109	47.742	47.513	48.174	0.76127					29	12	4	0	0	0	0.098731	1	17582	17582		103.82	67.697	1	16206000			31340	8897	22663	22829	30593	30593					0.030930759523016604
LLDTAQKNLY	10	Unmodified	_LLDTAQKNLY_					0	0	0		nc|ENSG00000142556|Q8N883-2|ZNF614;ENSG00000142556|ENST00000270649|ZNF614	nc|ENSG00000142556|Q8N883-2|ZNF614	nc|ENSG00000142556|Q8N883-2|ZNF614	MULTI-MSMS	A375_MHC_IP_R1	1	590.2244262695312	2	589.824421	1177.63429	-0.39731	-0.00023434	-3.0345	-0.0017898	-3.4318	-0.0020242	589.8226393401941	52.637	0.91171	52.637	52.237	53.148	0					27	17	2	0	0	0	0.011522	1	18769	18769		117.84	59.159	1	3323600			31341	5313	22664	22830	30594	30594					0.052576663319541694
LLDTAQKNLY	10	Unmodified	_LLDTAQKNLY_					0	0	0		nc|ENSG00000142556|Q8N883-2|ZNF614;ENSG00000142556|ENST00000270649|ZNF614	nc|ENSG00000142556|Q8N883-2|ZNF614	nc|ENSG00000142556|Q8N883-2|ZNF614	MULTI-SECPEP	A375_MHC_IP_R2	2	589.6771240234375	2	589.824421	1177.63429	-0.89056	-0.00052528	0.16007	9.4413E-05	-0.73049	-0.00043086	589.8248145145654	51.973	0.45878	52.725	52.524	52.983	0.75225					17	8	3	0	0	0	0.23508	1	19572	19572		81.915	49.13	1	3421200			31342	5313	22664	22830	30595	30595					0.052576663319541694
LLDTAQRALY	10	Unmodified	_LLDTAQRALY_					0	0	0		ENSG00000249471|ENST00000336614|ZNF324B;ENSG00000083812|ENST00000196482|ZNF324	ENSG00000249471|ENST00000336614|ZNF324B	ENSG00000249471|ENST00000336614|ZNF324B	MULTI-MSMS	A375_MHC_IP_R1	1	582.72314453125	2	582.324588	1162.63462	-0.23244	-0.00013536	-0.24932	-0.00014518	-0.48176	-0.00028054	582.324448987409	61.56	0.3555	61.56	61.382	61.737	0					11	6	2	0	0	0	0.073556	1	22234	22234		69.338	23.317	1	3315100			31343	9837	22665	22831	30596	30596					0.059810860518155096
LLDTAQRALY	10	Unmodified	_LLDTAQRALY_					0	0	0		ENSG00000249471|ENST00000336614|ZNF324B;ENSG00000083812|ENST00000196482|ZNF324	ENSG00000249471|ENST00000336614|ZNF324B	ENSG00000249471|ENST00000336614|ZNF324B	MULTI-MSMS	A375_MHC_IP_R2	2	582.7241821289062	2	582.324588	1162.63462	-0.67476	-0.00039293	0.14752	8.5905E-05	-0.52724	-0.00030702	582.3247166245849	60.833	0.50475	61.578	61.364	61.869	0.74503					18	9	3	0	0	0	0.1298	1	23064	23064		57.249	31.85	1	2400900			31344	9837	22665	22831	30597	30597					0.059810860518155096
LLDTNYNLFY	10	Unmodified	_LLDTNYNLFY_					0	0	0		ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	MULTI-SECPEP	A375_MHC_IP_R2	2	638.7161254882812	2	638.316428	1274.6183	-0.75759	-0.00048358	0.83756	0.00053463	0.079972	5.1047E-05	638.3169197465155	126.91	0.50631	127.18	127.01	127.51	0.26593					21	9	4	0	0	0	0.039477	1	49700	49700		126.57	53.598	1	57814000			31345	3851	22666	22832	30598	30598					-0.00802039904965568
LLDTNYNLFY	10	Unmodified	_LLDTNYNLFY_					0	0	0		ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	MULTI-MATCH	A375_MHC_IP_R1	1		2	638.316428	1274.6183	-0.27087	-0.0001729	-0.36519	-0.00023311	-0.63607	-0.00040601	638.3161705644766	127.26	0.50638	127.26	126.96	127.47	0	0.040965	-0.00089598	NaN	126.57	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57286000			31346	3851	22666	22832							-0.00802039904965568
LLDTPVKTQY	10	Unmodified	_LLDTPVKTQY_					0	0	0		nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2;ENSG00000168769|ENST00000380013|TET2	nc|ENSG00000168769|Q6N021-2|TET2	nc|ENSG00000168769|Q6N021-2|TET2	MULTI-SECPEP	A375_MHC_IP_R2	2	589.7262573242188	2	589.326796	1176.63904	-0.7595	-0.00044759	0.19832	0.00011687	-0.56118	-0.00033072	589.3268894036881	54.618	0.60883	55.368	55.018	55.626	0.75075					16	11	2	0	0	0	0.043964	1	20647	20647		91.085	45.385	1	9237400			31347	7340	22667	22833	30599	30599					0.057785504747243976
LLDTSRHYL	9	Unmodified	_LLDTSRHYL_					0	0	0		ENSG00000213614|ENST00000268097|HEXA;ENST00000568777.5_1_15:72638642-72646100:-|nuORF	ENSG00000213614|ENST00000268097|HEXA	ENSG00000213614|ENST00000268097|HEXA	MULTI-SECPEP	A375_MHC_IP_R1	1	373.60504150390625	3	373.204862	1116.59276	0.80494	0.00030041	-1.1248	-0.00041977	-0.31983	-0.00011936	373.20471638219874	44.651	0.86417	44.651	44.37	45.234	0					24	16	2	0	0	0	0.15736	1	15580	15580		57.108	0	1	8660400			31348	9574	22668	22834	30600	30600					0.03912530363277256
LLDTSRHYL	9	Unmodified	_LLDTSRHYL_					0	0	0		ENSG00000213614|ENST00000268097|HEXA;ENST00000568777.5_1_15:72638642-72646100:-|nuORF	ENSG00000213614|ENST00000268097|HEXA	ENSG00000213614|ENST00000268097|HEXA	MULTI-SECPEP	A375_MHC_IP_R1	1	558.6627807617188	2	559.303655	1116.59276	-0.043469	-2.4312E-05	-0.2886	-0.00016142	-0.33207	-0.00018573	559.3036110169188	44.617	0.40711	44.617	44.42	44.827	0					13	7	2	0	0	0	0.14438	1	15563	15563		40.239	0	1	1736000			31349	9574	22668	22834	30601	30601					0.03912530363277256
LLDTSRHYL	9	Unmodified	_LLDTSRHYL_					0	0	0		ENSG00000213614|ENST00000268097|HEXA;ENST00000568777.5_1_15:72638642-72646100:-|nuORF	ENSG00000213614|ENST00000268097|HEXA	ENSG00000213614|ENST00000268097|HEXA	MULTI-SECPEP	A375_MHC_IP_R2	2	373.939208984375	3	373.204862	1116.59276	0.60209	0.0002247	-1.4374	-0.00053644	-0.83529	-0.00031174	373.20465879210167	43.767	1.1623	44.536	44.278	45.441	0.7691					28	22	2	0	0	0	0.16595	1	16312	16312		53.404	0	1	9231900			31350	9574	22668	22834	30602	30602					0.03912530363277256
LLDTSRHYL	9	Unmodified	_LLDTSRHYL_					0	0	0		ENSG00000213614|ENST00000268097|HEXA;ENST00000568777.5_1_15:72638642-72646100:-|nuORF	ENSG00000213614|ENST00000268097|HEXA	ENSG00000213614|ENST00000268097|HEXA	MULTI-SECPEP	A375_MHC_IP_R2	2	558.6631469726562	2	559.303655	1116.59276	-0.48674	-0.00027223	0.33106	0.00018516	-0.15568	-8.7071E-05	559.304078495762	43.786	0.40285	44.555	44.38	44.782	0.7691					12	7	2	0	0	0	0.27114	1	16335	16335		27.629	0	1	2636400			31351	9574	22668	22834	30603	30603					0.03912530363277256
LLDVCLEHF	9	Unmodified	_LLDVCLEHF_					0	0	0			REV__ENST00000451663.5_1_21:15313179-15342301:-|nuORF	REV__ENST00000451663.5_1_21:15313179-15342301:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	545.220947265625	2	544.775885	1087.53722	-0.50344	-0.00027426	-3.1535	-0.001718	-3.657	-0.0019922	544.7752381106945	98.038	0.25588	98.038	97.845	98.101	0					5	4	2	0	0	0	0.63811	1	36018	36018		12.532	0.89125	1	1003200	+		31352	24893	22669	22835	30604	30604					-0.003050191486863696
LLDVPTAAV	9	Unmodified	_LLDVPTAAV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-SECPEP	A375_MHC_IP_R1	1	450.1659851074219	2	449.765843	897.517133	-0.18126	-8.1525E-05	0.070357	3.1644E-05	-0.1109	-4.9881E-05	449.76579470332103	95.742	0.60405	95.742	95.465	96.069	0					17	11	2	0	0	0	0.033126	1	35175	35175		97.075	40.533	1	3006100			31353	9651	22670	22836	30605	30605					0.06427553182993506
LLDVPTAAV	9	Unmodified	_LLDVPTAAV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-SECPEP	A375_MHC_IP_R2	2	450.16558837890625	2	449.765843	897.517133	-0.033117	-1.4895E-05	-0.53469	-0.00024048	-0.56781	-0.00025538	449.76574455164393	94.963	0.66077	95.713	95.432	96.093	0.75045					30	12	3	0	0	0	0.043556	1	36064	36064		89.427	32.886	1	5204200			31354	9651	22670	22836	30606	30606					0.06427553182993506
LLDVPTAAV	9	Unmodified	_LLDVPTAAV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-SECPEP	A375_MHC_IP_R2	2	897.953369140625	1	898.52441	897.517133	-0.5958	-0.00053534	0.39499	0.00035491	-0.20081	-0.00018043	898.5246564531109	97.397	1.4223	98.153	97.569	98.992	0.75586					61	27	4	0	0	0	0.50702	1	36795	36795		32.305	11.852	1	39508000			31355	9651	22670	22836	30607	30607					0.06427553182993506
LLDVPTAAV	9	Unmodified	_LLDVPTAAV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-MATCH	A375_MHC_IP_R1	1		1	898.52441	897.517133	-0.13415	-0.00012054	0.37209	0.00033433	0.23794	0.00021379	898.5246289057867	98.226	1.1208	98.226	97.743	98.864	0	0.03661	-1.2299E-05	NaN	32.305	52	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40541000			31356	9651	22670	22836							0.06427553182993506
LLDVRDRDSY	10	Unmodified	_LLDVRDRDSY_					0	0	0		nc|ENSG00000106477|Q9BYV8-2|CEP41;SEMA3E-CEP41|1|fusion;ENSG00000106477|ENST00000223208|CEP41;SEMA3E-CEP41|2|fusion;nc|ENSG00000106477|Q9BYV8-5|CEP41	nc|ENSG00000106477|Q9BYV8-2|CEP41	nc|ENSG00000106477|Q9BYV8-2|CEP41	MULTI-SECPEP	A375_MHC_IP_R1	1	418.2820129394531	3	417.882448	1250.62551	0.24125	0.00010082	0.0019124	7.9916E-07	0.24317	0.00010162	417.88222928632763	38.602	0.46121	38.602	38.319	38.78	0					16	8	3	0	0	0	0.92295	1	13133	13133		15.538	3.2978	1	3417600			31357	2693	22671	22837	30608	30608					0.010226926954601367
LLDVSLQSI	9	Unmodified	_LLDVSLQSI_					0	0	0		nc|ENSG00000137070|Q14626-2|IL11RA;ENSG00000137070|ENST00000441545|IL11RA	nc|ENSG00000137070|Q14626-2|IL11RA	nc|ENSG00000137070|Q14626-2|IL11RA	MULTI-SECPEP	A375_MHC_IP_R2	2	494.6793518066406	2	494.289682	986.564812	-0.53177	-0.00026285	-0.060014	-2.9664E-05	-0.59178	-0.00029251	494.2895658970245	67.07	0.55782	67.806	67.597	68.155	0.73631					13	10	2	0	0	0	0.35487	1	25405	25405		36.127	0	1	989330			31358	4854	22672	22838	30609	30609					0.07099207383191697
LLDVTPLSL	9	Unmodified	_LLDVTPLSL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000425843.1_1_X:120337248-120337797:-|nuORF;tr|U7T027|U7T027_FUSNUChaperoneproteinDnaKOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaKPE=2SV=1;ENSG00000113013|ENST00000297185|HSPA9;ENST00000507097.5_1_5:137893182-137909502:-|nuORF;ENST00000508003.1_1_5:137895468-137897466:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8;ENSG00000113013|ENST00000297185|HSPA9	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	A375_MHC_IP_R1	1	486.19451904296875	2	485.794601	969.574648	-0.24753	-0.00012025	0.21547	0.00010467	-0.032066	-1.5578E-05	485.79467581516104	128.76	0.46057	128.76	128.63	129.09	0					17	8	3	0	0	0	0.0022313	1	49499	49499		141.83	21.376	1	35068000			31359	2906;3122	22673	22839	30610	30610					0.08864395388582125
LLDVTPLSL	9	Unmodified	_LLDVTPLSL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000425843.1_1_X:120337248-120337797:-|nuORF;tr|U7T027|U7T027_FUSNUChaperoneproteinDnaKOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaKPE=2SV=1;ENSG00000113013|ENST00000297185|HSPA9;ENST00000507097.5_1_5:137893182-137909502:-|nuORF;ENST00000508003.1_1_5:137895468-137897466:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8;ENSG00000113013|ENST00000297185|HSPA9	ENSG00000109971|ENST00000534624|HSPA8	MULTI-SECPEP	A375_MHC_IP_R1	1	970.391357421875	1	970.581925	969.574648	0.11402	0.00011067	0.6181	0.00059992	0.73212	0.00071058	970.5825500485114	128.81	0.6136	128.81	128.63	129.25	0					30	11	4	0	0	0	0.010923	1	49554	49554		128.37	27.994	1	175820000			31360	2906;3122	22673	22839	30611	30611					0.08864395388582125
LLDVTPLSL	9	Unmodified	_LLDVTPLSL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000425843.1_1_X:120337248-120337797:-|nuORF;tr|U7T027|U7T027_FUSNUChaperoneproteinDnaKOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaKPE=2SV=1;ENSG00000113013|ENST00000297185|HSPA9;ENST00000507097.5_1_5:137893182-137909502:-|nuORF;ENST00000508003.1_1_5:137895468-137897466:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8;ENSG00000113013|ENST00000297185|HSPA9	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	A375_MHC_IP_R2	2	486.1938781738281	2	485.794601	969.574648	-0.67018	-0.00032557	-0.76715	-0.00037268	-1.4373	-0.00069825	485.794167616006	128.51	0.4559	128.75	128.6	129.06	0.23947					18	8	3	0	0	0	0.0021165	1	50462	50462		156.16	22.454	1	31815000			31361	2906;3122	22673	22839	30612	30612					0.08864395388582125
LLEADNPRLLR	11	Unmodified	_LLEADNPRLLR_					0	0	0			REV__ENST00000392225.7_1_19:35616099-35617731:-|nuORF	REV__ENST00000392225.7_1_19:35616099-35617731:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	655.7815551757812	2	655.382968	1308.75138	-0.66879	-0.00043832	-0.80396	-0.0005269	-1.4728	-0.00096522	655.3823398459925	143.19	0.70848	143.22	142.79	143.49	0.030151					25	13	3	0	0	0	0.73647	1	55923	55923		2.7352	1.2533	1	1833600	+		31362	19854	22674	22840	30613	30613					0.10935824271541605
LLEAERLIV	9	Unmodified	_LLEAERLIV_					0	0	0		GRAMD1A|p.P101L|1|0.33|ENSG00000089351|chr19:35009949-35009949|C/T|missense_variant	GRAMD1A|p.P101L|1|0.33|ENSG00000089351|chr19:35009949-35009949|C/T|missense_variant	GRAMD1A|p.P101L|1|0.33|ENSG00000089351|chr19:35009949-35009949|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	528.7268676757812	2	528.326599	1054.63865	-0.40525	-0.00021411	0.33759	0.00017836	-0.067664	-3.5749E-05	528.3266488548876	68.286	0.45667	69.021	68.765	69.221	0.73511					12	8	2	0	0	0	0.31606	1	25904	25904		39.95	7.164	1	1205700			31363	14076	22675	22841	30614	30614					0.11351175545519254
LLEAERLIV	9	Unmodified	_LLEAERLIV_					0	0	0		GRAMD1A|p.P101L|1|0.33|ENSG00000089351|chr19:35009949-35009949|C/T|missense_variant	GRAMD1A|p.P101L|1|0.33|ENSG00000089351|chr19:35009949-35009949|C/T|missense_variant	GRAMD1A|p.P101L|1|0.33|ENSG00000089351|chr19:35009949-35009949|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	528.326599	1054.63865	-0.158	-8.3474E-05	-0.20912	-0.00011048	-0.36712	-0.00019396	528.3265694793049	69.198	0.40674	69.198	68.92	69.326	0	0.088601	-0.00032845	NaN	32.786	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1392700			31364	14076	22675	22841							0.11351175545519254
LLEAHPLW	8	Unmodified	_LLEAHPLW_					0	0	0		ENST00000597083.5_1_19:20278065-20278116:+|nuORF	ENST00000597083.5_1_19:20278065-20278116:+|nuORF	ENST00000597083.5_1_19:20278065-20278116:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	490.1734924316406	2	489.774003	977.533452	-0.42295	-0.00020715	-0.30764	-0.00015068	-0.7306	-0.00035783	489.77369132032646	86.925	0.5567	86.925	86.629	87.186	0					14	10	2	0	0	0	0.58504	1	31901	31901		52.693	0	1	2474100			31365	13843	22676	22842	30615	30615					0.04378679139745145
LLEAKVSL	8	Unmodified	_LLEAKVSL_					0	0	0		ENSG00000124574|ENST00000372530|ABCC10;nc|ENSG00000124574|Q5T3U5-2|ABCC10;ENST00000463024.1_1_6:43403548-43405752:+|nuORF	ENSG00000124574|ENST00000372530|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	MSMS	A375_MHC_IP_R2	2	436.6096496582031	2	436.776211	871.537869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.253	1	93.992	93.492	94.492	0.73902								0	0	0	0.16876	1	35453	35453		12.532	0	1				31366	3916	22677	22843	30616	30616					0.09696143562666748
LLEASVPQL	9	Unmodified	_LLEASVPQL_					0	0	0			REV__ENSG00000204590|ENST00000376621|GNL1	REV__ENSG00000204590|ENST00000376621|GNL1	MULTI-MSMS	A375_MHC_IP_R2	2	971.3555297851562	1	969.561524	968.554247	-0.02347	-2.2755E-05	-0.12722	-0.00012335	-0.15069	-0.0001461	969.5612814903318	98.473	0.50973	99.232	98.945	99.454	0.75977					20	9	3	0	0	0	0.064406	1	37364	37364		58.679	12.658	1	6025400	+		31367	22527	22678	22844	30617	30617					0.06871224728752168
LLECGHMVT	9	Unmodified	_LLECGHMVT_					0	0	0		nc|ENSG00000092871|Q8WZ73-3|RFFL;nc|ENSG00000092871|Q8WZ73-2|RFFL;ENSG00000092871|ENST00000394597|RFFL;ENSG00000170633|ENST00000361234|RNF34;nc|ENSG00000170633|Q969K3-2|RNF34	nc|ENSG00000092871|Q8WZ73-3|RFFL	nc|ENSG00000092871|Q8WZ73-3|RFFL	MULTI-MSMS	A375_MHC_IP_R1	1	502.71343994140625	2	501.740988	1001.46742	-0.58301	-0.00029252	0.22022	0.0001105	-0.36279	-0.00018203	501.7419157011861	85.641	0.86336	85.641	85.159	86.022	0					30	16	3	0	0	0	0.63811	1	31437	31437		12.532	0	1	1370300			31368	2014	22679	22845	30618	30618					-0.03325221088948638
LLECRWREMEE	11	Unmodified	_LLECRWREMEE_					0	0	0		ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;MAP4K4|p.S953Kfs*30|1|0.04|ENSG00000071054|chr2:101877028-101877029|-/AGTGGCCTGATGCTGCTGGACAGAA|frameshift_variant	ENSG00000071054|ENST00000324219|MAP4K4	ENSG00000071054|ENST00000324219|MAP4K4	MSMS	A375_MHC_IP_R1	1	498.64697265625	3	498.567366	1492.68027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.544	1	78.544	78.044	79.044	0								0	0	0	0.16331	1	28662	28662		0.50596	0	1				31369	1507	22680	22846	30619	30619					-0.04636379819794456
LLEDKHFQSY	10	Unmodified	_LLEDKHFQSY_					0	0	0		WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENSG00000178252|ENST00000608424|WDR6;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	640.7189331054688	2	640.319502	1278.62445	-0.50717	-0.00032475	-0.18049	-0.00011557	-0.68766	-0.00044032	640.319278461629	40.482	0.96069	40.482	40.254	41.215	0					36	18	4	0	0	0	1.0833E-10	1	13897	13897		218.93	149.83	1	30617000			31370	8149;11731;12639	22681	22847	30620	30620					-0.0037152167342355824
LLEDKHFQSY	10	Unmodified	_LLEDKHFQSY_					0	0	0		WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENSG00000178252|ENST00000608424|WDR6;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	427.61505126953125	3	427.215427	1278.62445	-0.021085	-9.008E-06	-0.42741	-0.00018259	-0.44849	-0.0001916	427.2152152787444	40.483	0.66118	40.483	40.151	40.813	0					33	12	5	0	0	0	0.028893	1	13899	13899		64.688	36.454	1	27939000			31371	8149;11731;12639	22681	22847	30621	30621					-0.0037152167342355824
LLEDKHFQSY	10	Unmodified	_LLEDKHFQSY_					0	0	0		WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENSG00000178252|ENST00000608424|WDR6;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	640.7191162109375	2	640.319502	1278.62445	-0.78454	-0.00050236	0.20796	0.00013316	-0.57658	-0.0003692	640.3195327945632	39.778	1.0152	40.552	40.067	41.082	0.77451					37	19	4	0	0	0	2.7E-07	1	14680	14680		205.73	139.27	1	26625000			31372	8149;11731;12639	22681	22847	30622	30622					-0.0037152167342355824
LLEDKHFQSY	10	Unmodified	_LLEDKHFQSY_					0	0	0		WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENSG00000178252|ENST00000608424|WDR6;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	427.6150817871094	3	427.215427	1278.62445	-0.22717	-9.7052E-05	-0.23065	-9.8536E-05	-0.45782	-0.00019559	427.2152992979199	39.77	0.8119	40.544	40.118	40.93	0.77451					41	15	5	0	0	0	0.042457	1	14687	14687		68.484	36.848	1	27746000			31373	8149;11731;12639	22681	22847	30623	30623					-0.0037152167342355824
LLEDLAHQF	9	Unmodified	_LLEDLAHQF_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST;REV__nc|ENSG00000151914|Q03001-8|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-MSMS	A375_MHC_IP_R2	2	544.7340087890625	2	543.284931	1084.55531	-1.1292	-0.0006135	-0.016389	-8.9039E-06	-1.1456	-0.0006224	543.2850409334876	60.338	3.541	61.083	60.096	63.637	0.74503					219	69	6	0	0	0	0.4867	1	22750	22750		20.454	1.1966	1	720160000	+		31374	19783;27289	22682	22848	30624	30624					0.0164143909764789
LLEDLLSII	9	Unmodified	_LLEDLLSII_					0	0	0		TPO|p.S120L|1|0.48|ENSG00000115705|chr2:1436261-1436261|C/T|missense_variant	TPO|p.S120L|1|0.48|ENSG00000115705|chr2:1436261-1436261|C/T|missense_variant	TPO|p.S120L|1|0.48|ENSG00000115705|chr2:1436261-1436261|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	515.2149047851562	2	514.815533	1027.61651	-0.84277	-0.00043387	-0.094255	-4.8524E-05	-0.93703	-0.0004824	514.8154349660986	138.27	0.70988	138.27	138.1	138.81	0					21	13	3	0	0	0	0.061132	1	53197	53197		77.984	0	1	6472100			31375	29379	22683	22849	30625	30625					0.10380951077104328
LLEDRQYY	8	Unmodified	_LLEDRQYY_					0	0	0			REV__ENSG00000111799|ENST00000322507|COL12A1	REV__ENSG00000111799|ENST00000322507|COL12A1	MULTI-MSMS	A375_MHC_IP_R2	2	550.6168823242188	2	550.274564	1098.53457	-1.0927	-0.0006013	1.2149	0.00066851	0.12212	6.7202E-05	550.2748249215027	60.336	1.117	61.081	60.601	61.718	0.74504					54	21	4	0	0	0	0.74466	1	23016	23016		21.747	2.4897	1	13255000	+		31376	17695	22684	22850	30626	30626					-0.010751512820206699
LLEEDTPRY	9	Unmodified	_LLEEDTPRY_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-SECPEP	A375_MHC_IP_R1	1	568.6851806640625	2	568.285128	1134.5557	-0.37526	-0.00021325	0.031917	1.8138E-05	-0.34334	-0.00019511	568.2849198769178	46.415	0.60486	46.415	46.094	46.699	0					21	11	2	0	0	0	0.31976	1	16243	16243		55.503	24.234	1	2862700			31377	9143	22685	22851	30627	30627					-0.00619185973164349
LLEEDTPRY	9	Unmodified	_LLEEDTPRY_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-SECPEP	A375_MHC_IP_R2	2	568.6851196289062	2	568.285128	1134.5557	-0.35312	-0.00020067	-0.050253	-2.8558E-05	-0.40337	-0.00022923	568.285059566482	45.692	0.60372	46.457	46.201	46.805	0.76519					19	11	2	0	0	0	0.6191	1	17100	17100		23.79	6.8475	1	3545400			31378	9143	22685	22851	30628	30628					-0.00619185973164349
LLEELQVVKL	10	Unmodified	_LLEELQVVKL_					0	0	0			REV__DNAH9|p.S4145Ffs*44|1|0.38|ENSG00000007174|chr17:11934016-11934016|C/-|frameshift_variant;REV__ENSG00000105877|ENST00000409508|DNAH11;REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	A375_MHC_IP_R1	1	592.7688598632812	2	592.368464	1182.72238	0.12282	7.2756E-05	0.82648	0.00048958	0.94931	0.00056234	592.3688980735213	49.26	0.45603	49.26	49.084	49.54	0					17	8	3	0	0	0	0.72014	1	17423	17423		3.2813	0.28607	1	4436900	+		31379	22046;16019;17416	22686	22852	30629	30629					0.13832286922570347
LLEELQVVKL	10	Unmodified	_LLEELQVVKL_					0	0	0			REV__DNAH9|p.S4145Ffs*44|1|0.38|ENSG00000007174|chr17:11934016-11934016|C/-|frameshift_variant;REV__ENSG00000105877|ENST00000409508|DNAH11;REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	592.368464	1182.72238	0.12282	7.2756E-05	0.82648	0.00048958	0.94931	0.00056234	592.3688980735213	49.26	0.45603	49.26	49.084	49.54	0	0.10249	-0.00039125	NaN	3.2813	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4436900	+		31380	22046;16019;17416	22686	22852							0.13832286922570347
LLEFRREL	8	Unmodified	_LLEFRREL_					0	0	0			REV__ENSG00000173442|ENST00000309295|EHBP1L1	REV__ENSG00000173442|ENST00000309295|EHBP1L1	MULTI-MSMS	A375_MHC_IP_R1	1	359.26947021484375	3	359.213469	1074.61858	0.085459	3.0698E-05	0.13634	4.8976E-05	0.2218	7.9674E-05	359.2135342241385	40.216	1.5218	40.216	39.744	41.266	0					43	29	2	0	0	0	0.77675	1	13756	13756		6.7232	0.09279	1	1541900	+		31381	21222	22687	22853	30630	30630					0.0842542460554796
LLEGRAALL	9	Unmodified	_LLEGRAALL_					0	0	0			REV__ENSG00000103742|ENST00000352385|IGDCC4	REV__ENSG00000103742|ENST00000352385|IGDCC4	MULTI-SECPEP	A375_MHC_IP_R1	1	478.1866760253906	2	478.300384	954.586216	-0.43197	-0.00020661	0.47968	0.00022943	0.047716	2.2822E-05	478.3005719708276	103.34	2.0842	103.34	102.81	104.89	0					89	40	4	0	0	0	0.58271	1	37849	37849		14.838	0	1	30619000	+		31382	17292	22688	22854	30631	30631					0.10710637202555517
LLEHDHLLK	9	Unmodified	_LLEHDHLLK_					0	0	0			REV__nc|ENSG00000163492|Q6ZP82-1|CCDC141	REV__nc|ENSG00000163492|Q6ZP82-1|CCDC141	MULTI-SECPEP	A375_MHC_IP_R1	1	373.6169738769531	3	373.216991	1116.62914	0.28828	0.00010759	0.080035	2.987E-05	0.36831	0.00013746	373.21696383773735	31.343	0.35537	31.343	31.109	31.465	0					15	6	3	0	0	0	0.48845	1	10040	10040		30.703	13.261	1	5083200	+		31383	20369	22689	22855	30632	30632					0.07549407259966756
LLEHDHLLK	9	Unmodified	_LLEHDHLLK_					0	0	0			REV__nc|ENSG00000163492|Q6ZP82-1|CCDC141	REV__nc|ENSG00000163492|Q6ZP82-1|CCDC141	MULTI-SECPEP	A375_MHC_IP_R2	2	373.6169738769531	3	373.216991	1116.62914	0.39178	0.00014622	-0.54582	-0.00020371	-0.15405	-5.7493E-05	373.21678953012713	30.465	0.45468	31.183	30.962	31.417	0.71857					16	8	4	0	0	0	0.46121	1	10732	10732		20.581	0.95498	1	2412500	+		31384	20369	22689	22855	30633	30633					0.07549407259966756
LLEHFNTV	8	Unmodified	_LLEHFNTV_					0	0	0		nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;ENSG00000104447|ENST00000395715|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	MULTI-MSMS	A375_MHC_IP_R1	1	486.6815490722656	2	486.761092	971.507631	-0.39316	-0.00019138	0.76651	0.00037311	0.37335	0.00018173	486.76128518569595	91.289	0.45554	91.289	90.997	91.452	0					10	8	2	0	0	0	0.45507	2	33507	33507;33541		50.855	14.811	1	722930			31385	2514	22690	22856	30634;30635	30634					0.020737848974818007
LLEHFNTV	8	Unmodified	_LLEHFNTV_					0	0	0		nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;ENSG00000104447|ENST00000395715|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	MULTI-MSMS	A375_MHC_IP_R2	2	486.69964599609375	2	486.761092	971.507631	-0.49243	-0.0002397	0.86115	0.00041918	0.36872	0.00017948	486.76126138361536	90.502	0.45773	91.236	90.904	91.362	0.7345					12	8	2	0	0	0	0.73946	1	34353	34353		23.148	2.6948	1	999790			31386	2514	22690	22856	30636	30636					0.020737848974818007
LLEKEILFY	9	Unmodified	_LLEKEILFY_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	A375_MHC_IP_R1	1	584.7366943359375	2	584.336633	1166.65871	-0.1973	-0.00011529	-0.17433	-0.00010187	-0.37163	-0.00021716	584.3365832685063	102.4	0.75751	102.4	102.15	102.91	0					31	14	3	0	0	0	0.030891	1	37631	37631		74.2	34.242	1	3681100			31387	6011	22691	22857	30637	30637					0.08204926485473152
LLEKEILFY	9	Unmodified	_LLEKEILFY_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-SECPEP	A375_MHC_IP_R2	2	584.73583984375	2	584.336633	1166.65871	-0.38008	-0.00022209	0.080187	4.6856E-05	-0.29989	-0.00017524	584.3364699552054	101.55	0.60986	102.32	102.06	102.67	0.76428					26	11	3	0	0	0	0.10495	1	38482	38482		74.2	28.179	1	4178600			31388	6011	22691	22857	30638	30638					0.08204926485473152
LLEKEILYY	9	Unmodified	_LLEKEILYY_					0	0	0		nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1	nc|ENSG00000102038|P28370-2|SMARCA1	nc|ENSG00000102038|P28370-2|SMARCA1	MULTI-SECPEP	A375_MHC_IP_R1	1	592.73388671875	2	592.33409	1182.65363	-0.55457	-0.00032849	-0.10858	-6.4314E-05	-0.66314	-0.0003928	592.3340470994419	85.278	0.71114	85.278	84.955	85.667	0					29	13	3	0	0	0	0.21838	1	31243	31243		74.2	38.073	1	5834000			31389	2352	22692	22858	30639	30639					0.06960622622841584
LLEKEILYY	9	Unmodified	_LLEKEILYY_					0	0	0		nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1	nc|ENSG00000102038|P28370-2|SMARCA1	nc|ENSG00000102038|P28370-2|SMARCA1	MULTI-MSMS	A375_MHC_IP_R2	2	592.7338256835938	2	592.33409	1182.65363	-0.4646	-0.0002752	0.19304	0.00011434	-0.27156	-0.00016085	592.3340818498752	84.433	0.60683	85.169	84.916	85.523	0.73602					28	11	3	0	0	0	0.038567	1	32099	32099		83.429	28.655	1	5115500			31390	2352	22692	22858	30640	30640					0.06960622622841584
LLEKQEGVP	9	Unmodified	_LLEKQEGVP_					0	0	0			REV__nc|ENSG00000109680|Q8N5T2-2|TBC1D19	REV__nc|ENSG00000109680|Q8N5T2-2|TBC1D19	MULTI-SECPEP	A375_MHC_IP_R2	2	506.1788330078125	2	506.787307	1011.56006	-0.97652	-0.00049489	-1.9537	-0.0009901	-2.9302	-0.001485	506.78674314903327	35.301	0.40456	36.064	35.878	36.283	0.76338					12	7	2	0	0	0	0.56537	1	12862	12862		17.113	10.759	1	1128900	+		31391	17589	22693	22859	30641	30641					0.05474323240434842
LLEKSVHQ	8	Unmodified	_LLEKSVHQ_					0	0	0			REV__ENST00000584951.1_1_17:61890748-61893081:+|nuORF	REV__ENST00000584951.1_1_17:61890748-61893081:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	477.674072265625	2	477.274367	952.53418	-0.54888	-0.00026197	-0.025287	-1.2069E-05	-0.57417	-0.00027404	477.27445216121697	39.453	0.71066	39.453	39.033	39.744	0					30	13	3	0	0	0	0.85715	1	13471	13471		29.082	0	1	17370000	+		31392	22356	22694	22860	30642	30642					0.05601473788806288
LLEKWKRL	8	Unmodified	_LLEKWKRL_					0	0	0			REV__nc|ENSG00000164509|Q8NI17-8|IL31RA	REV__nc|ENSG00000164509|Q8NI17-8|IL31RA	MULTI-MSMS	A375_MHC_IP_R2	2	362.9656677246094	3	362.565843	1084.6757	-0.50757	-0.00018403	0.014765	5.3531E-06	-0.49281	-0.00017867	362.56582228861606	57.208	0.40871	57.958	57.763	58.171	0.7498					12	7	2	0	0	0	0.77715	1	21661	21661		5.2969	1.1074	1	2101900	+		31393	27324	22695	22861	30643	30643					0.1367489188194213
LLEKWKRL	8	Unmodified	_LLEKWKRL_					0	0	0			REV__nc|ENSG00000164509|Q8NI17-8|IL31RA	REV__nc|ENSG00000164509|Q8NI17-8|IL31RA	MULTI-MATCH	A375_MHC_IP_R1	1		3	362.565843	1084.6757	0.12815	4.6461E-05	-0.13613	-4.9356E-05	-0.0079844	-2.8949E-06	362.5656981610439	58.221	0.50763	58.221	58.024	58.531	0	0.13119	-9.6573E-05	NaN	5.2969	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2139300	+		31394	27324	22695	22861							0.1367489188194213
LLEKWKRL	8	Unmodified	_LLEKWKRL_					0	0	0			REV__nc|ENSG00000164509|Q8NI17-8|IL31RA	REV__nc|ENSG00000164509|Q8NI17-8|IL31RA	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	362.565843	1084.6757	-0.50757	-0.00018403	0.014765	5.3531E-06	-0.49281	-0.00017867	362.56582228861606	57.208	0.40871	57.958	57.763	58.171	0.7498	-0.13119	6.7555E-05	NaN	5.2969	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2101900	+		31395	27324	22695	22861							0.1367489188194213
LLEKYEEK	8	Unmodified	_LLEKYEEK_					0	0	0			REV__tr|U7T739|U7T739_FUSNUNTPpyrophosphohydrolaseMazGputativecatalyticcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00106PE=4SV=1	REV__tr|U7T739|U7T739_FUSNUNTPpyrophosphohydrolaseMazGputativecatalyticcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00106PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	525.6974487304688	2	526.28714	1050.55973	-0.48625	-0.00025591	4.3632	0.0022963	3.8769	0.0020404	526.2905888038317	80.334	0.50616	81.079	80.91	81.416	0.74474					12	9	2	0	0	0	0.94479	1	30621	30621		19.439	0	1	2118500	+		31396	28878	22696	22862	30644	30644					0.03646903520575506
LLELGRAP	8	Unmodified	_LLELGRAP_					0	0	0			REV__TTC24|p.A529Gfs*12|1|0.29|ENSG00000187862|chr1:156585964-156585977|CCCATCTTCCATTT/-|frameshift_variant	REV__TTC24|p.A529Gfs*12|1|0.29|ENSG00000187862|chr1:156585964-156585977|CCCATCTTCCATTT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	868.9249267578125	1	868.525079	867.517802	0.10537	9.1518E-05	-0.52946	-0.00045985	-0.42409	-0.00036833	868.5244504856645	45.223	0.25227	45.223	45.132	45.384	0					7	4	2	0	0	0	0.77741	1	15846	15846		4.3292	0	1	1821300	+		31397	22055	22697	22863	30645	30645					0.07874392622704818
LLELTYQGP	9	Unmodified	_LLELTYQGP_					0	0	0		ENSG00000102313|ENST00000218436|ITIH6;ENSG00000102313.9,ITIH6,chrX,-,I5.1,54787726,54788479|96|26.49|1|intron	ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	MULTI-MSMS	A375_MHC_IP_R1	1	1036.8466796875	1	1033.55644	1032.54916	-0.010152	-1.0493E-05	-0.082819	-8.5598E-05	-0.092972	-9.6091E-05	1033.5562849771175	86.603	0.91125	86.603	86.274	87.186	0					50	17	4	0	0	0	0.51106	1	31668	31668		19.257	0	1	85696000			31398	2372	22698	22864	30646	30646					0.034189208661246084
LLELTYQGP	9	Unmodified	_LLELTYQGP_					0	0	0		ENSG00000102313|ENST00000218436|ITIH6;ENSG00000102313.9,ITIH6,chrX,-,I5.1,54787726,54788479|96|26.49|1|intron	ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	1033.55644	1032.54916	-0.010152	-1.0493E-05	-0.082819	-8.5598E-05	-0.092972	-9.6091E-05	1033.5562849771175	86.603	0.91125	86.603	86.274	87.186	0	0.01696	8.0437E-05	NaN	19.257	50	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85696000			31399	2372	22698	22864							0.034189208661246084
LLELTYQGP	9	Unmodified	_LLELTYQGP_					0	0	0		ENSG00000102313|ENST00000218436|ITIH6;ENSG00000102313.9,ITIH6,chrX,-,I5.1,54787726,54788479|96|26.49|1|intron	ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	MULTI-MATCH	A375_MHC_IP_R2	2		1	1033.55644	1032.54916	0.21706	0.00022435	-0.39832	-0.00041169	-0.18126	-0.00018734	1033.5558859273065	85.833	0.86346	86.569	86.188	87.052	0.73601	-0.01696	-0.00024565	NaN	19.257	47	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80044000			31400	2372	22698	22864							0.034189208661246084
LLENDVSTLGY	11	Unmodified	_LLENDVSTLGY_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000474971.1_1_X:53563041-53563582:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	A375_MHC_IP_R1	1	612.7116088867188	2	612.311343	1222.60813	-0.36912	-0.00022602	0.24713	0.00015132	-0.12199	-7.4697E-05	612.3116127820344	94.032	1.0137	94.032	93.484	94.497	0					39	19	3	0	0	0	0.00048024	1	34513	34513		110.55	66.78	1	8055300			31401	1846	22699	22865	30647	30647					0.005733523698154386
LLENDVSTLGY	11	Unmodified	_LLENDVSTLGY_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000474971.1_1_X:53563041-53563582:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	A375_MHC_IP_R2	2	612.7117919921875	2	612.311343	1222.60813	-0.41446	-0.00025378	0.50434	0.00030881	0.089876	5.5032E-05	612.3117594097301	93.393	0.91386	94.133	93.647	94.561	0.73941					35	17	3	0	0	0	0.041426	1	35470	35470		90.135	58.097	1	7832400			31402	1846	22699	22865	30648	30648					0.005733523698154386
LLENFVKQF	9	Unmodified	_LLENFVKQF_					0	0	0			REV__ENST00000565396.5_1_16:2048235-2048610:-|nuORF	REV__ENST00000565396.5_1_16:2048235-2048610:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	568.6851806640625	2	569.318774	1136.623	-0.3543	-0.00020171	1.4337	0.00081626	1.0794	0.00061455	569.3197168799907	46.456	0.50322	46.456	46.144	46.647	0					12	9	2	0	0	0	0.65246	1	16243	16243		15.847	0	1	2074500	+		31403	20805	22700	22866	30649	30649					0.06014889028483594
LLENLTSRY	9	Unmodified	_LLENLTSRY_					0	0	0		ENSG00000068745|ENST00000328631|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	MULTI-SECPEP	A375_MHC_IP_R2	2	370.6046142578125	3	370.204751	1107.59242	-0.0084699	-3.1356E-06	0.36436	0.00013489	0.35589	0.00013175	370.2048292643314	21.335	0.66179	21.954	21.777	22.439	0.61932					15	12	2	0	0	0	0.75164	1	6743	6743		3.5871	0	1	3271800			31404	1464	22701	22867	30650	30650					0.0429311064342528
LLEPFIHQV	9	Unmodified	_LLEPFIHQV_					0	0	0		ENSG00000176095|ENST00000321599|IP6K1	ENSG00000176095|ENST00000321599|IP6K1	ENSG00000176095|ENST00000321599|IP6K1	MULTI-SECPEP	A375_MHC_IP_R2	2	548.2123413085938	2	548.313492	1094.61243	-0.68764	-0.00037704	0.085747	4.7016E-05	-0.60189	-0.00033003	548.3133490320754	90.063	0.5107	90.794	90.493	91.004	0.7318					12	9	2	0	0	0	0.46045	1	34294	34294		36.127	9.2434	1	687660			31405	8000	22702	22868	30651	30651					0.0689090637404206
LLEPFVHQV	9	Unmodified	_LLEPFVHQV_					0	0	0		ENSG00000068745|ENST00000328631|IP6K2;IP6K2|p.G16S|1|0.34|ENSG00000068745|chr3:48695246-48695246|C/T|missense_variant;nc|ENSG00000068745|Q9UHH9-3|IP6K2;nc|ENSG00000068745|Q9UHH9-6|IP6K2;nc|ENSG00000068745|Q9UHH9-2|IP6K2;nc|ENSG00000068745|Q9UHH9-4|IP6K2;nc|ENSG00000068745|Q9UHH9-5|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	MULTI-SECPEP	A375_MHC_IP_R1	1	541.7061767578125	2	541.305667	1080.59678	-0.5038	-0.00027271	0.67649	0.00036619	0.17269	9.3478E-05	541.3063803427199	81.976	0.8117	81.976	81.607	82.418	0					32	15	4	0	0	0	0.083712	1	29952	29952		65.235	25.278	1	5726300			31406	1464	22703	22869	30652	30652					0.059706198569983826
LLEPFVHQV	9	Unmodified	_LLEPFVHQV_					0	0	0		ENSG00000068745|ENST00000328631|IP6K2;IP6K2|p.G16S|1|0.34|ENSG00000068745|chr3:48695246-48695246|C/T|missense_variant;nc|ENSG00000068745|Q9UHH9-3|IP6K2;nc|ENSG00000068745|Q9UHH9-6|IP6K2;nc|ENSG00000068745|Q9UHH9-2|IP6K2;nc|ENSG00000068745|Q9UHH9-4|IP6K2;nc|ENSG00000068745|Q9UHH9-5|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	MULTI-SECPEP	A375_MHC_IP_R2	2	541.7050170898438	2	541.305667	1080.59678	-0.93847	-0.000508	0.89889	0.00048657	-0.039581	-2.1425E-05	541.3064331256547	81.072	0.71382	81.816	81.416	82.13	0.74474					29	13	3	0	0	0	0.13064	1	30781	30781		47.749	9.7747	1	5658500			31407	1464	22703	22869	30653	30653					0.059706198569983826
LLEPLVTQV	9	Unmodified	_LLEPLVTQV_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-3|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-SECPEP	A375_MHC_IP_R1	1	506.1873474121094	2	506.307875	1010.6012	-0.22275	-0.00011278	0.30614	0.000155	0.083388	4.222E-05	506.308061392192	110.6	0.30679	110.6	110.39	110.7	0					8	5	2	0	0	0	0.63327	1	40526	40526		18.146	2.3781	1	621810			31408	1184;1400	22704	22870	30654	30654					0.09632084279905939
LLEPLVTQV	9	Unmodified	_LLEPLVTQV_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-3|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-SECPEP	A375_MHC_IP_R2	2	506.18682861328125	2	506.307875	1010.6012	-0.60891	-0.00030829	-0.12772	-6.4667E-05	-0.73663	-0.00037296	506.3078504743185	109.73	0.2535	110.47	110.28	110.54	0.74684					7	4	2	0	0	0	0.69507	1	41350	41350		9.3831	3.6227	1	442150			31409	1184;1400	22704	22870	30655	30655					0.09632084279905939
LLEQRRLWRWL	11	Unmodified	_LLEQRRLWRWL_					0	0	0		ENST00000494373.1_1_2:54014190-54014463:+|nuORF	ENST00000494373.1_1_2:54014190-54014463:+|nuORF	ENST00000494373.1_1_2:54014190-54014463:+|nuORF	MSMS	A375_MHC_IP_R1	1	523.5650634765625	3	523.643927	1567.90995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.855	1	92.855	92.355	93.355	0								0	0	0	0.1635	1	34129	34129		0.50596	0	1				31410	12690	22705	22871	30656	30656					0.14871162970484875
LLERDPIPA	9	Unmodified	_LLERDPIPA_					0	0	0		ENSG00000106009|ENST00000340611|BRAT1;nc|ENSG00000106009|Q6PJG6-2|BRAT1;ENST00000469750.5_1_7:2583168-2595320:-|nuORF;ENST00000493232.5_1_7:2583168-2583660:-|nuORF	ENSG00000106009|ENST00000340611|BRAT1	ENSG00000106009|ENST00000340611|BRAT1	MULTI-SECPEP	A375_MHC_IP_R2	2	511.6631164550781	2	512.295299	1022.57605	-1.1965	-0.00061294	0.7404	0.0003793	-0.45605	-0.00023363	512.7967792309072	56.887	0.30417	57.637	57.408	57.712	0.75015					6	5	2	0	0	0	0.67221	1	21486	21486		19.439	6.3965	1	513380			31411	2658	22706	22872	30657	30657					0.06566029477323809
LLERHHPQF	9	Unmodified	_LLERHHPQF_					0	0	0			REV__ENST00000558780.5_2_14:24651254-24657791:-|nuORF	REV__ENST00000558780.5_2_14:24651254-24657791:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	393.6117858886719	3	392.880602	1175.61998	0.55448	0.00021784	-3.8948	-0.0015302	-3.3403	-0.0013123	393.2127081131567	45.178	0.80723	45.178	44.727	45.534	0					20	15	2	0	0	0	0.67539	1	15856	15856		11.495	0	1	3361400	+		31412	26140	22707	22873	30658	30658					0.03919058694305022
LLERYRSVKEE	11	Unmodified	_LLERYRSVKEE_					0	0	0			REV__nc|ENSG00000186635|Q96P48-2|ARAP1	REV__nc|ENSG00000186635|Q96P48-2|ARAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	711.065673828125	2	711.39099	1420.76743	-0.8896	-0.00063285	1.2878	0.0009161	0.39815	0.00028324	711.3918208385533	136.49	0.61642	136.49	136.3	136.92	0					18	11	2	0	0	0	0.99424	1	52543	52543		0.96228	0	1	2054600	+		31413	21978	22708	22874	30659	30659					0.07387485717799791
LLESDSLSHL	10	Unmodified	_LLESDSLSHL_					0	0	0			REV__tr|U7T2H7|U7T2H7_FUSNUDNAintegrityscanningproteinDisAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=disAPE=3SV=1	REV__tr|U7T2H7|U7T2H7_FUSNUDNAintegrityscanningproteinDisAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=disAPE=3SV=1	MSMS	A375_MHC_IP_R1	1	557.683349609375	2	557.292953	1112.57135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.66	1	104.66	104.16	105.16	0								0	0	0	0.15283	1	38428	38428		11.64	0	1		+		31414	28743	22709	22875	30660	30660					0.01957100543904744
LLESEIGVL	9	Unmodified	_LLESEIGVL_					0	0	0		ENST00000367677.3_1_1:174983911-174983941:-|nuORF	ENST00000367677.3_1_1:174983911-174983941:-|nuORF	ENST00000367677.3_1_1:174983911-174983941:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	972.5441284179688	1	972.561189	971.553913	0.14413	0.00014018	2.2622	0.0022001	2.4063	0.0023403	972.5623445033684	141.44	0.25671	141.48	141.37	141.63	0.04216					5	4	2	0	0	0	0.64808	1	55333	55333		11.64	0	1	463700			31415	11099	22710	22876	30661	30661					0.06699805008918247
LLETLKRLY	9	Unmodified	_LLETLKRLY_					0	0	0			REV__nc|ENSG00000135317|Q9Y5W7-3|SNX14	REV__nc|ENSG00000135317|Q9Y5W7-3|SNX14	MULTI-SECPEP	A375_MHC_IP_R1	1	384.28643798828125	3	383.572775	1147.69649	0.27501	0.00010549	0.11023	4.2281E-05	0.38524	0.00014777	383.5727757309708	31.442	0.45551	31.442	31.109	31.565	0					14	8	2	0	0	0	0.65527	1	9943	9943		12.241	2.6967	1	777600	+		31416	18842	22711	22877	30662	30662					0.12855437470943798
LLETREGYV	9	Unmodified	_LLETREGYV_					0	0	0			REV__nc|ENSG00000143845|Q9NVF9-3|ETNK2	REV__nc|ENSG00000143845|Q9NVF9-3|ETNK2	MULTI-SECPEP	A375_MHC_IP_R2	2	540.142822265625	2	540.290214	1078.56587	-0.91129	-0.00049236	-0.18824	-0.0001017	-1.0995	-0.00059406	540.2902567686538	48.752	0.50997	49.51	49.18	49.69	0.75736					14	9	2	0	0	0	0.43707	1	18278	18278		21.747	0	1	1380800	+		31417	19391	22712	22878	30663	30663					0.029734217520854145
LLETRNSL	8	Unmodified	_LLETRNSL_					0	0	0			REV__nc|ENSG00000151952|Q14C87-2|TMEM132D	REV__nc|ENSG00000151952|Q14C87-2|TMEM132D	MULTI-MSMS	A375_MHC_IP_R1	1	473.67230224609375	2	473.271824	944.529095	-0.25196	-0.00011924	1.7132	0.00081082	1.4613	0.00069157	473.2725139995798	106.8	0.76675	106.8	106.37	107.14	0					20	14	2	0	0	0	0.73946	1	39229	39229		23.148	0	1	1323100	+		31418	19785	22713	22879	30664	30664					0.054611699261727153
LLEVSHELLHI	11	Unmodified	_LLEVSHELLHI_					0	0	0			REV__ENSG00000188352|ENST00000338382|FOCAD	REV__ENSG00000188352|ENST00000338382|FOCAD	MULTI-SECPEP	A375_MHC_IP_R1	1	435.3183898925781	3	434.918722	1301.73434	-0.31565	-0.00013728	-0.87779	-0.00038177	-1.1934	-0.00051905	434.9187793172957	65.865	0.50881	65.865	65.514	66.022	0					13	9	2	0	0	0	0.99246	1	23875	23875		7.4771	3.3604	1	1294700	+		31419	22088	22714	22880	30665	30665					0.0955390366575557
LLEVSHELLHI	11	Unmodified	_LLEVSHELLHI_					0	0	0			REV__ENSG00000188352|ENST00000338382|FOCAD	REV__ENSG00000188352|ENST00000338382|FOCAD	MULTI-MATCH	A375_MHC_IP_R2	2		3	434.918722	1301.73434	-0.29897	-0.00013003	-0.33903	-0.00014745	-0.638	-0.00027748	434.91858934639424	64.986	0.4063	65.725	65.511	65.917	0.73811	-0.070321	5.4956E-05	NaN	7.4771	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1430700	+		31420	22088	22714	22880							0.0955390366575557
LLEWLLSFI	9	Unmodified	_LLEWLLSFI_					0	0	0			REV__ENSG00000205978|ENST00000382554|NYNRIN	REV__ENSG00000205978|ENST00000382554|NYNRIN	MULTI-SECPEP	A375_MHC_IP_R1	1	378.9486389160156	3	378.558354	1132.65323	0.23916	9.0536E-05	1.5777	0.00059724	1.8168	0.00068778	378.55949937207356	27.547	0.50553	27.547	27.28	27.786	0					18	9	3	0	0	0	0.71541	1	8346	8346		4.5289	0.94181	1	1830500	+		31421	22589	22715	22881	30666	30666					0.09221247693653822
LLEWMLWQWLQ	11	Unmodified	_LLEWMLWQWLQ_					0	0	0			REV__ENST00000343533.9_1_X:77298182-77298251:+|nuORF	REV__ENST00000343533.9_1_X:77298182-77298251:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	515.33154296875	3	515.935607	1544.78499	-0.67581	-0.00034868	1.1891	0.0006135	0.51329	0.00026482	516.2717105157914	133.85	0.71541	134.01	133.7	134.42	0.16487					19	13	2	0	0	0	1.0004	1	52698	52698		1.2148	0	1	4647900	+		31422	23751	22716	22882	30667	30667					0.03439109719101907
LLFAVKHEI	9	Unmodified	_LLFAVKHEI_					0	0	0			REV__nc|ENSG00000054654|Q8WXH0|SYNE2	REV__nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	A375_MHC_IP_R1	1	357.4490661621094	3	357.218332	1068.63317	0.032053	1.145E-05	-0.19354	-6.9136E-05	-0.16149	-5.7686E-05	357.21827426685286	77.411	0.45508	77.411	77.184	77.639	0					12	8	2	0	0	0	0.73804	1	28295	28295		2.086	0.34373	1	1046000	+		31423	16407	22717	22883	30668	30668					0.10159496753703934
LLFCDTTEAL	10	Unmodified	_LLFCDTTEAL_					0	0	0			REV__ENSG00000206536|ENST00000383695|OR5K3	REV__ENSG00000206536|ENST00000383695|OR5K3	MULTI-SECPEP	A375_MHC_IP_R2	2	375.5856018066406	3	375.85473	1124.54236	-0.42612	-0.00016016	-0.43668	-0.00016413	-0.86279	-0.00032429	376.188951757797	29.473	0.55483	30.172	29.93	30.485	0.69872					16	10	2	0	0	0	0.91909	1	10337	10337		5.4027	0	1	4011700	+		31424	22157	22718	22884	30669	30669					-0.014927600767578042
LLFDRPMHV	9	Oxidation (M)	_LLFDRPM(Oxidation (M))HV_		LLFDRPM(1)HV		LLFDRPM(50)HV	0	0	1		HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant;nc|ENSG00000099783|P52272-2|HNRNPM;ENSG00000099783|ENST00000325495|HNRNPM	HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant	HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	382.2707214355469	3	381.870826	1142.59065	0.34218	0.00013067	-0.045525	-1.7385E-05	0.29665	0.00011328	381.8708359386005	50.725	0.5579	50.725	50.51	51.068	0					20	10	3	0	0	0	0.10622	1	17980	17980		49.554	24.673	1	4258800			31425	2081	22719	22885	30670	30670		77			0.02505778353815913
LLFDRPMHV	9	Unmodified	_LLFDRPMHV_					0	0	0		HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant;nc|ENSG00000099783|P52272-2|HNRNPM;ENSG00000099783|ENST00000325495|HNRNPM	HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant	HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	376.93914794921875	3	376.539188	1126.59573	0.62747	0.00023627	-0.062365	-2.3483E-05	0.5651	0.00021278	376.5391152187649	69.107	0.50739	69.107	68.819	69.326	0					24	9	3	0	0	0	0.12592	1	25038	25038		41.956	29.715	1	4111600			31426	2081	22719	22886	30671	30671					0.03750082216447481
LLFDRPMHV	9	Unmodified	_LLFDRPMHV_					0	0	0		HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant;nc|ENSG00000099783|P52272-2|HNRNPM;ENSG00000099783|ENST00000325495|HNRNPM	HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant	HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	376.939208984375	3	376.539188	1126.59573	0.33208	0.00012504	-0.43815	-0.00016498	-0.10606	-3.9937E-05	376.53906628300285	68.205	0.51022	68.94	68.611	69.121	0.73511					25	9	4	0	0	0	0.12592	1	25823	25823		41.956	22.594	1	4623300			31427	2081	22719	22886	30672	30672					0.03750082216447481
LLFEGEKITI	10	Unmodified	_LLFEGEKITI_					0	0	0		ENST00000504101.1_1_7:102210280-102212998:-|nuORF;nc|ENSG00000285437|Q9H1A7|POLR2J3;ENSG00000228049|ENST00000333432|POLR2J2;nc|ENSG00000228049|Q9GZM3-2|POLR2J2;ENSG00000168255|ENST00000513506|POLR2J3	ENST00000504101.1_1_7:102210280-102212998:-|nuORF	ENST00000504101.1_1_7:102210280-102212998:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	582.2392578125	2	581.839539	1161.66453	-0.18733	-0.000109	-0.085474	-4.9732E-05	-0.27281	-0.00015873	581.8393937559221	103.5	0.356	103.5	103.32	103.68	0					12	6	2	0	0	0	0.32321	1	38023	38023		73.196	23.263	1	1829900			31428	7277	22720	22887	30673	30673					0.09016024997140448
LLFEGEKITI	10	Unmodified	_LLFEGEKITI_					0	0	0		ENST00000504101.1_1_7:102210280-102212998:-|nuORF;nc|ENSG00000285437|Q9H1A7|POLR2J3;ENSG00000228049|ENST00000333432|POLR2J2;nc|ENSG00000228049|Q9GZM3-2|POLR2J2;ENSG00000168255|ENST00000513506|POLR2J3	ENST00000504101.1_1_7:102210280-102212998:-|nuORF	ENST00000504101.1_1_7:102210280-102212998:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	582.2390747070312	2	581.839539	1161.66453	-0.34833	-0.00020267	-0.1433	-8.3375E-05	-0.49163	-0.00028605	581.8393661196139	102.69	0.50883	103.46	103.18	103.68	0.76428					12	9	2	0	0	0	0.69261	1	38923	38923		44.392	2.5523	1	3169500			31429	7277	22720	22887	30674	30674					0.09016024997140448
LLFENRQLL	9	Unmodified	_LLFENRQLL_					0	0	0			REV__nc|ENSG00000165716|Q5VUD6-2|DIPK1B	REV__nc|ENSG00000165716|Q5VUD6-2|DIPK1B	MULTI-SECPEP	A375_MHC_IP_R2	2	383.3009033203125	3	382.560758	1144.66044	-0.027329	-1.0455E-05	-0.39945	-0.00015281	-0.42678	-0.00016327	382.5607804152146	63.955	0.456	64.695	64.394	64.85	0.74022					14	8	2	0	0	0	0.75842	1	24231	24231		13.042	2.8919	1	1049900	+		31430	20616	22721	22888	30675	30675					0.09389980294099587
LLFERATF	8	Unmodified	_LLFERATF_					0	0	0		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-SECPEP	A375_MHC_IP_R2	2	499.1790466308594	2	498.779285	995.544017	-0.65649	-0.00032744	0.79535	0.0003967	0.13886	6.9263E-05	498.7794890524803	65.386	0.60751	66.124	65.867	66.475	0.73811					19	11	3	0	0	0	0.36486	1	24790	24790		43.858	3.901	1	2571200			31431	1784	22722	22889	30676	30676					0.04606661794173306
LLFERATFL	9	Unmodified	_LLFERATFL_					0	0	0		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-SECPEP	A375_MHC_IP_R1	1	555.720947265625	2	555.321317	1108.62808	-0.36038	-0.00020013	-0.68349	-0.00037956	-1.0439	-0.00057969	555.3211804374154	111.62	0.56238	111.62	111.31	111.87	0					20	10	3	0	0	0	0.30133	1	40937	40937		51.415	11.466	1	1713900			31432	1784	22723	22890	30677	30677					0.07811192891063001
LLFERATFL	9	Unmodified	_LLFERATFL_					0	0	0		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-SECPEP	A375_MHC_IP_R2	2	554.70166015625	2	555.321317	1108.62808	-0.61006	-0.00033878	0.44499	0.00024711	-0.16507	-9.1667E-05	555.3215371557651	110.65	0.45802	111.38	111.09	111.55	0.73691					17	8	3	0	0	0	0.23894	1	41740	41740		55.503	5.5697	1	2287500			31433	1784	22723	22890	30678	30678					0.07811192891063001
LLFFDVSRS	9	Unmodified	_LLFFDVSRS_					0	0	0		nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX	nc|ENSG00000115486|P38435-2|GGCX	nc|ENSG00000115486|P38435-2|GGCX	MULTI-SECPEP	A375_MHC_IP_R2	2	542.6945190429688	2	542.295299	1082.57605	-0.81508	-0.00044201	0.021172	1.1481E-05	-0.79391	-0.00043053	542.2952724386347	78.079	0.40795	78.822	78.572	78.98	0.74293					14	7	2	0	0	0	0.78798	1	29633	29633		1.6526	0	1	2135400			31434	3313	22724	22891	30679	30679					0.038060294773458736
LLFFDVSRS	9	Unmodified	_LLFFDVSRS_					0	0	0		nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX	nc|ENSG00000115486|P38435-2|GGCX	nc|ENSG00000115486|P38435-2|GGCX	MULTI-MATCH	A375_MHC_IP_R1	1		2	542.295299	1082.57605	-0.43138	-0.00023394	-0.057357	-3.1105E-05	-0.48874	-0.00026504	542.2950559850179	78.934	0.60976	78.934	78.707	79.316	0	0.056074	-3.7658E-05	NaN	3.9444	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3022300			31435	3313	22724	22891							0.038060294773458736
LLFFSYIYIKE	11	Unmodified	_LLFFSYIYIKE_					0	0	0			REV__ENST00000518857.5_1_8:104081005-104081197:+|nuORF	REV__ENST00000518857.5_1_8:104081005-104081197:+|nuORF	MSMS	A375_MHC_IP_R2	2	718.4298706054688	2	718.397221	1434.77989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.599	1	79.343	78.843	79.843	0.74474								0	0	0	0.16305	1	29847	29847		0.30703	0	1		+		31436	25677	22725	22892	30680	30680					0.07989129128145578
LLFIDFLY	8	Unmodified	_LLFIDFLY_					0	0	0			REV__ENSG00000178997|ENST00000458580|EXD1	REV__ENSG00000178997|ENST00000458580|EXD1	MULTI-SECPEP	A375_MHC_IP_R1	1	521.517578125	2	522.294236	1042.57392	-0.30686	-0.00016027	-4.018	-0.0020986	-4.3249	-0.0022588	522.2912973431987	70.244	0.20575	70.244	70.135	70.341	0					5	3	2	0	0	0	0.972	1	25520	25520		0	0	1	536840	+		31437	21533	22726	22893	30681	30681					0.05433600739524991
LLFIFAHPPQ	10	Unmodified	_LLFIFAHPPQ_					0	0	0		ENST00000475688.1_1_3:50379695-50380193:-|nuORF	ENST00000475688.1_1_3:50379695-50380193:-|nuORF	ENST00000475688.1_1_3:50379695-50380193:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	591.1904907226562	2	591.837134	1181.65972	-0.34581	-0.00020466	-4.2243	-0.0025001	-4.5701	-0.0027048	591.8352203515238	53.465	0.25436	53.465	53.301	53.555	0					7	4	2	0	0	0	0.78945	1	18999	18999		19.257	0	1	1796700			31438	12424	22727	22894	30682	30682					0.07615185645022393
LLFIFWRKYK	10	Unmodified	_LLFIFWRKYK_					0	0	0			REV__ENST00000409673.7_1_2:175260533-175263141:+|nuORF	REV__ENST00000409673.7_1_2:175260533-175263141:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	472.6867980957031	3	471.951697	1412.83326	-0.71165	-0.00033587	2.32	0.0010949	1.6084	0.00075907	472.2872586453179	136.02	0.30801	136.02	135.84	136.15	0					7	5	2	0	0	0	0.95014	1	52439	52439		0.15932	0.064481	1	3355400	+		31439	24474	22728	22895	30683	30683					0.14335971421292015
LLFLFAFTL	9	Unmodified	_LLFLFAFTL_					0	0	0			REV__ENST00000591031.6_1_19:19232302-19241151:-|nuORF	REV__ENST00000591031.6_1_19:19232302-19241151:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1085.3848876953125	1	1084.64413	1083.63685	0.20703	0.00022456	3.1129	0.0033763	3.3199	0.0036009	1084.6472669269792	134.99	0.25255	135.13	134.95	135.2	0.13901					6	4	2	0	0	0	0.5339	1	53067	53067		18.135	0	1	8174100	+		31440	16479	22729	22896	30684	30684					0.09838166527561043
LLFLFAFTL	9	Unmodified	_LLFLFAFTL_					0	0	0			REV__ENST00000591031.6_1_19:19232302-19241151:-|nuORF	REV__ENST00000591031.6_1_19:19232302-19241151:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	1084.64413	1083.63685	-0.17421	-0.00018895	3.5682	0.0038702	3.394	0.0036812	1084.6478590109427	135.11	0.25525	135.11	134.98	135.23	0	-0.0093379	8.9853E-05	NaN	18.135	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10178000	+		31441	16479	22729	22896							0.09838166527561043
LLFLKKKKKK	10	Unmodified	_LLFLKKKKKK_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	A375_MHC_IP_R2	2	637.3419189453125	2	637.457751	1272.90095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.531	1	81.276	80.776	81.776	0.74474								0	0	0	0.15642	1	30574	30574		0	0	1				31442	10894	22730	22897	30685	30685					0.27541421352088946
LLFLLFYSF	9	Unmodified	_LLFLLFYSF_					0	0	0		TTYH3-MAD1L1|3|fusion;nc|ENSG00000136295|Q9C0H2-2|TTYH3;ENSG00000136295|ENST00000258796|TTYH3;nc|ENSG00000136295|Q9C0H2-4|TTYH3	TTYH3-MAD1L1|3|fusion	TTYH3-MAD1L1|3|fusion	MSMS	A375_MHC_IP_R2	2	581.7269897460938	2	581.830986	1161.64742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.14	1	133.3	132.8	133.8	0.16487								0	0	0	0.15486	1	52377	52377		4.3292	0.38484	1				31443	4779	22731	22898	30686	30686					0.07306149181977162
LLFNSFSS	8	Unmodified	_LLFNSFSS_					0	0	0			REV__OR51T1|p.S11F|1|0.09|ENSG00000176900|chr11:4881931-4881931|C/T|missense_variant	REV__OR51T1|p.S11F|1|0.09|ENSG00000176900|chr11:4881931-4881931|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	457.6640319824219	2	457.734543	913.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.32	1	105.08	104.58	105.58	0.76308								0	0	0	0.16876	1	39474	39474		36.044	0	1		+		31444	27682	22732	22899	30687	30687					-0.00565592885186561
LLFPESIRV	9	Unmodified	_LLFPESIRV_					0	0	0		nc|ENSG00000197226|Q66K14|TBC1D9B;ENSG00000197226|ENST00000355235|TBC1D9B	nc|ENSG00000197226|Q66K14|TBC1D9B	nc|ENSG00000197226|Q66K14|TBC1D9B	MULTI-SECPEP	A375_MHC_IP_R1	1	537.7212524414062	2	537.321317	1072.62808	-0.64993	-0.00034922	0.062062	3.3347E-05	-0.58787	-0.00031587	537.3212053761507	102.94	1.1698	102.94	102.61	103.78	0					45	22	3	0	0	0	0.14572	1	37793	37793		53.833	3.8998	1	13914000			31445	9133	22733	22900	30688	30688					0.09467192891088416
LLFPESIRV	9	Unmodified	_LLFPESIRV_					0	0	0		nc|ENSG00000197226|Q66K14|TBC1D9B;ENSG00000197226|ENST00000355235|TBC1D9B	nc|ENSG00000197226|Q66K14|TBC1D9B	nc|ENSG00000197226|Q66K14|TBC1D9B	MULTI-SECPEP	A375_MHC_IP_R2	2	537.6917724609375	2	537.321317	1072.62808	-0.84316	-0.00045305	-0.22803	-0.00012253	-1.0712	-0.00057558	537.3210505019929	102.06	1.4253	102.83	102.46	103.89	0.76428					50	27	3	0	0	0	0.10103	1	38696	38696		62.573	3.8939	1	14846000			31446	9133	22733	22900	30689	30689					0.09467192891088416
LLFQYLRIKKK	11	Unmodified	_LLFQYLRIKKK_					0	0	0			REV__ENST00000533030.1_1_11:47376780-47400013:-|nuORF	REV__ENST00000533030.1_1_11:47376780-47400013:-|nuORF	MSMS	A375_MHC_IP_R2	2	725.8690795898438	2	725.468847	1448.92314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.72	1	143.74	143.24	144.24	0.024414								0	0	0	0.16353	1	56159	56159		0.35063	0.043601	1		+		31447	16513	22734	22901	30690	30690					0.21663601029854362
LLFQYLRIKKK	11	Unmodified	_LLFQYLRIKKK_					0	0	0			REV__ENST00000533030.1_1_11:47376780-47400013:-|nuORF	REV__ENST00000533030.1_1_11:47376780-47400013:-|nuORF	MSMS	A375_MHC_IP_R2	2	725.5640869140625	2	725.468847	1448.92314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.48	1	144.51	144.01	145.01	0.024414								0	0	0	0.1636	1	56436	56436		0	0	1		+		31448	16513	22734	22901	30691	30691					0.21663601029854362
LLFRQEICK	9	Unmodified	_LLFRQEICK_					0	0	0		LTBP1|p.G1432R|1|0.22|ENSG00000049323|chr2:33363413-33363413|G/A|missense_variant	LTBP1|p.G1432R|1|0.22|ENSG00000049323|chr2:33363413-33363413|G/A|missense_variant	LTBP1|p.G1432R|1|0.22|ENSG00000049323|chr2:33363413-33363413|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	383.91876220703125	3	383.886476	1148.6376	-0.17935	-6.8849E-05	-0.38923	-0.00014942	-0.56858	-0.00021827	383.8864567268803	40.18	1.0151	40.955	40.626	41.641	0.77451					23	19	2	0	0	0	0.6324	1	14794	14794		8.9762	0	1	1541900			31449	14327	22735	22902	30692	30692					0.06922637904949624
LLFSPWFFAKR	11	Unmodified	_LLFSPWFFAKR_					0	0	0			REV__nc|ENSG00000197857|P15621-2|ZNF44	REV__nc|ENSG00000197857|P15621-2|ZNF44	MULTI-SECPEP	A375_MHC_IP_R2	2	471.010498046875	3	471.267686	1410.78123	-0.52947	-0.00024952	0.53737	0.00025325	0.0078976	3.7219E-06	471.26790024764136	132.97	0.9678	133.14	132.53	133.5	0.16487					29	18	2	0	0	0	0.99955	1	52099	52099		1.2148	0.76031	1	2893300	+		31450	22323	22736	22903	30693	30693					0.09226808007542786
LLFSPWFFAKR	11	Unmodified	_LLFSPWFFAKR_					0	0	0			REV__nc|ENSG00000197857|P15621-2|ZNF44	REV__nc|ENSG00000197857|P15621-2|ZNF44	MULTI-MATCH	A375_MHC_IP_R1	1		3	471.267686	1410.78123	-0.64725	-0.00030503	0.51108	0.00024086	-0.13617	-6.4171E-05	471.26780130293196	133.05	1.0225	133.05	132.44	133.46	0	-0.042617	-1.8711E-05	NaN	1.2148	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2901900	+		31451	22323	22736	22903							0.09226808007542786
LLFSSRQYP	9	Unmodified	_LLFSSRQYP_					0	0	0			REV__ENST00000439290.5_1_9:131833323-131833761:+|nuORF	REV__ENST00000439290.5_1_9:131833323-131833761:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	555.2218627929688	2	555.800749	1109.58694	-0.59929	-0.00033309	-0.48616	-0.00027021	-1.0855	-0.0006033	555.8006797100251	61.253	0.40806	61.253	61.024	61.432	0					17	7	3	0	0	0	0.71071	1	21995	21995		14.838	14.838	1	2872900	+		31452	24792	22737	22904	30694	30694					0.03653431851603273
LLFVKNNIL	9	Unmodified	_LLFVKNNIL_					0	0	0			REV__ENSG00000076356|ENST00000367033|PLXNA2;REV__ENSG00000221866|ENST00000321063|PLXNA4	REV__ENSG00000076356|ENST00000367033|PLXNA2	MULTI-MSMS	A375_MHC_IP_R1	1	358.6221923828125	3	358.562099	1072.66447	-0.26349	-9.4477E-05	0.72169	0.00025877	0.4582	0.00016429	358.5624410991329	67.435	0.35661	67.435	67.348	67.704	0					11	6	2	0	0	0	0.71416	1	24505	24505		5.7319	0.43497	1	1023800	+		31453	16673;22692	22738	22905	30695	30695					0.13104069787800654
LLFVRTKSL	9	Unmodified	_LLFVRTKSL_					0	0	0		ENSG00000137460|ENST00000511601|FHDC1	ENSG00000137460|ENST00000511601|FHDC1	ENSG00000137460|ENST00000511601|FHDC1	MULTI-MSMS	A375_MHC_IP_R1	1	359.9619140625	3	359.565732	1075.67537	0.6305	0.00022671	-0.48234	-0.00017343	0.14816	5.3274E-05	359.56544678141705	69.554	0.50563	69.554	69.377	69.882	0					18	9	3	0	0	0	0.6898	1	25181	25181		4.897	0	1	4715900			31454	4883	22739	22906	30696	30696					0.14055472162090155
LLFVSTRVY	9	Unmodified	_LLFVSTRVY_					0	0	0			REV__ENSG00000084444|ENST00000197268|FAM234B	REV__ENSG00000084444|ENST00000197268|FAM234B	MULTI-MSMS	A375_MHC_IP_R1	1	549.7222900390625	2	549.321317	1096.62808	-0.31233	-0.00017157	1.2873	0.00070712	0.97493	0.00053555	549.3218542692456	107.06	0.76664	107.06	106.73	107.49	0					20	14	2	0	0	0	0.65721	1	39323	39323		10.824	0	1	1307000	+		31455	16820	22740	22907	30697	30697					0.0836319289110179
LLFVSTRVY	9	Unmodified	_LLFVSTRVY_					0	0	0			REV__ENSG00000084444|ENST00000197268|FAM234B	REV__ENSG00000084444|ENST00000197268|FAM234B	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	549.321317	1096.62808	-0.31233	-0.00017157	1.2873	0.00070712	0.97493	0.00053555	549.3218542692456	107.06	0.76664	107.06	106.73	107.49	0	0.077058	0.00023534	NaN	10.824	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1307000	+		31456	16820	22740	22907							0.0836319289110179
LLFVWLRF	8	Unmodified	_LLFVWLRF_					0	0	0		ENST00000554067.1_2_14:55657878-55658290:-|nuORF	ENST00000554067.1_2_14:55657878-55658290:-|nuORF	ENST00000554067.1_2_14:55657878-55658290:-|nuORF	MSMS	A375_MHC_IP_R2	2	547.1817626953125	2	547.331488	1092.64842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.576	1	100.34	99.839	100.84	0.76278								0	0	0	0.16876	1	37771	37771		11.114	4.7604	1				31457	13413	22741	22908	30698	30698					0.10580408341570546
LLFWDPGL	8	Unmodified	_LLFWDPGL_					0	0	0			REV__nc|ENSG00000128815|Q6ZS81-5|WDFY4	REV__nc|ENSG00000128815|Q6ZS81-5|WDFY4	MSMS	A375_MHC_IP_R1	1	480.61004638671875	2	480.763104	959.511654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.454	1	78.454	77.954	78.954	0								0	0	0	0.16876	1	28630	28630		11.114	0	1		+		31458	18469	22742	22909	30699	30699					0.030278743911935635
LLFYFNCNIY	10	Unmodified	_LLFYFNCNIY_					0	0	0		ENST00000505121.1_1_5:37138820-37142673:-|nuORF	ENST00000505121.1_1_5:37138820-37142673:-|nuORF	ENST00000505121.1_1_5:37138820-37142673:-|nuORF	MSMS	A375_MHC_IP_R1	1	655.2426147460938	2	655.317917	1308.62128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.003	1	76.003	75.503	76.503	0								0	0	0	0.14793	1	27696	27696		21.747	1.3321	1				31459	12837	22743	22910	30700	30700					-0.020684880517819693
LLFYMPTHLY	10	Unmodified	_LLFYMPTHLY_					0	0	0			REV__OR7G1|p.H54Y|1|0.35|ENSG00000161807|chr19:9115604-9115604|G/A|missense_variant	REV__OR7G1|p.H54Y|1|0.35|ENSG00000161807|chr19:9115604-9115604|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	433.62579345703125	3	433.226499	1296.65767	-0.75091	-0.00032531	-0.66918	-0.0002899	-1.4201	-0.00061522	433.22602727632534	33.847	0.45427	34.599	34.45	34.904	0.75225					20	8	4	0	0	0	0.63336	1	12153	12153		18.373	1.8072	1	5885500	+		31460	27700	22744	22911	30701	30701					0.02120388844923582
LLFYMPTHLY	10	Unmodified	_LLFYMPTHLY_					0	0	0			REV__OR7G1|p.H54Y|1|0.35|ENSG00000161807|chr19:9115604-9115604|G/A|missense_variant	REV__OR7G1|p.H54Y|1|0.35|ENSG00000161807|chr19:9115604-9115604|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	433.226499	1296.65767	-0.75091	-0.00032531	-0.66918	-0.0002899	-1.4201	-0.00061522	433.22602727632534	33.847	0.45427	34.599	34.45	34.904	0.75225	0.020077	0.00049528	NaN	18.373	20	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5885500	+		31461	27700	22744	22911							0.02120388844923582
LLGAISSIVAI	11	Unmodified	_LLGAISSIVAI_					0	0	0			REV__tr|U7T5T0|U7T5T0_FUSNU3-oxoacyl-[acyl-carrierprotein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00379PE=3SV=1	REV__tr|U7T5T0|U7T5T0_FUSNU3-oxoacyl-[acyl-carrierprotein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00379PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	529.1177978515625	2	528.8368	1055.65905	-0.44132	-0.00023339	-0.30459	-0.00016108	-0.74591	-0.00039446	528.8364301549813	90.329	0.40756	91.061	90.851	91.258	0.7318					9	7	2	0	0	0	0.82225	1	34319	34319		22.736	0	1	781220	+		31462	28836	22745	22912	30702	30702					0.13344346205326474
LLGAISSIVAI	11	Unmodified	_LLGAISSIVAI_					0	0	0			REV__tr|U7T5T0|U7T5T0_FUSNU3-oxoacyl-[acyl-carrierprotein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00379PE=3SV=1	REV__tr|U7T5T0|U7T5T0_FUSNU3-oxoacyl-[acyl-carrierprotein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00379PE=3SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	528.8368	1055.65905	-0.70548	-0.00037308	-0.0019493	-1.0309E-06	-0.70743	-0.00037412	528.8366829485511	91.207	0.30273	91.207	90.997	91.299	0	0.073329	7.6796E-05	NaN	22.736	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	828420	+		31463	28836	22745	22912							0.13344346205326474
LLGAPNSRA	9	Unmodified	_LLGAPNSRA_					0	0	0			REV__ENST00000470943.1_1_19:55177267-55178470:+|nuORF	REV__ENST00000470943.1_1_19:55177267-55178470:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	450.15875244140625	2	449.758884	897.503215	0.33015	0.00014849	-0.5947	-0.00026747	-0.26455	-0.00011898	449.75861291893864	49.218	0.70883	49.218	48.933	49.642	0					41	13	4	0	0	0	0.091096	1	17377	17377		52.268	0	1	18780000	+		31464	25110	22746	22913	30703	30703					0.05036320474562217
LLGAPNSRA	9	Unmodified	_LLGAPNSRA_					0	0	0			REV__ENST00000470943.1_1_19:55177267-55178470:+|nuORF	REV__ENST00000470943.1_1_19:55177267-55178470:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	449.758884	897.503215	0.33015	0.00014849	-0.5947	-0.00026747	-0.26455	-0.00011898	449.75861291893864	49.218	0.70883	49.218	48.933	49.642	0	0.13583	-9.6727E-05	NaN	52.268	41	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18780000	+		31465	25110	22746	22913							0.05036320474562217
LLGARGPSAG	10	Unmodified	_LLGARGPSAG_					0	0	0			REV__ENST00000585362.6_3_19:1104424-1105401:+|nuORF	REV__ENST00000585362.6_3_19:1104424-1105401:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	450.1588134765625	2	449.758884	897.503215	-0.22595	-0.00010162	-0.37728	-0.00016969	-0.60323	-0.00027131	449.75877967570995	48.188	0.70443	48.946	48.679	49.384	0.75809					35	13	3	0	0	0	0.19943	1	18059	18059		51.63	5.6089	1	24424000	+		31466	26378	22747	22914	30704	30704					0.05036320474573586
LLGASAYY	8	Unmodified	_LLGASAYY_					0	0	0			REV__ENSG00000163872|ENST00000305135|YEATS2	REV__ENSG00000163872|ENST00000305135|YEATS2	MSMS	A375_MHC_IP_R2	2	429.2907409667969	2	429.223811	856.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.146	1	30.865	30.365	31.365	0.71857								0	0	0	0.16876	1	10578	10578		2.8892	0	1		+		31467	20421	22748	22915	30705	30705					-0.0008897791391291321
LLGCMNQWI	9	Unmodified	_LLGCMNQWI_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-6|THADA	REV__nc|ENSG00000115970|Q6YHU6-6|THADA	MSMS	A375_MHC_IP_R1	1	539.2207641601562	2	539.26463	1076.51471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.137	1	90.137	89.637	90.637	0								0	0	0	0.15427	1	33123	33123		14.582	3.4672	1		+		31468	17926	22749	22916	30706	30706					-0.020489418179522545
LLGCMYLPA	9	Unmodified	_LLGCMYLPA_					0	0	0			REV__ENSG00000105509|ENST00000540069|HAS1	REV__ENSG00000105509|ENST00000540069|HAS1	MULTI-SECPEP	A375_MHC_IP_R1	1	491.150390625	2	490.750824	979.487096	-0.50978	-0.00025018	-0.36172	-0.00017751	-0.8715	-0.00042769	490.75070601504206	85.582	2.5885	85.582	85.159	87.747	0					115	50	4	0	0	0	0.64653	1	31275	31275		20.871	1.4322	1	12129000	+		31469	17389	22750	22917	30707	30707					-0.003468450782065702
LLGDHFRDM	9	Unmodified	_LLGDHFRDM_					0	0	0		ENSG00000198829|ENST00000362032|SUCNR1	ENSG00000198829|ENST00000362032|SUCNR1	ENSG00000198829|ENST00000362032|SUCNR1	MULTI-SECPEP	A375_MHC_IP_R2	2	368.285400390625	3	368.514931	1102.52296	0.303	0.00011166	-0.078199	-2.8818E-05	0.2248	8.2841E-05	368.51487055893847	27.458	0.30552	28.137	27.945	28.251	0.67857					8	5	2	0	0	0	0.77003	1	9402	9402		11.495	1.3441	1	766230			31470	9338	22751	22918	30708	30708					-0.024196715769903676
LLGDLSIPIV	10	Unmodified	_LLGDLSIPIV_					0	0	0			REV__PGR|p.A50V|1|0.48|ENSG00000082175|chr11:101128922-101128922|G/A|missense_variant	REV__PGR|p.A50V|1|0.48|ENSG00000082175|chr11:101128922-101128922|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	519.9856567382812	2	520.323525	1038.6325	-0.4003	-0.00020828	-0.074932	-3.8989E-05	-0.47523	-0.00024727	520.3231125662035	78.125	0.5582	78.125	77.998	78.556	0					14	10	3	0	0	0	0.73628	1	28499	28499		15.847	0	1	1336400	+		31471	27772	22752	22919	30709	30709					0.11472657313993295
LLGDQISLL	9	Unmodified	_LLGDQISLL_					0	0	0		nc|ENSG00000080189|Q9NQQ7-2|SLC35C2;ENSG00000080189|ENST00000372230|SLC35C2;nc|ENSG00000080189|Q9NQQ7-3|SLC35C2;ENST00000480329.5_1_20:44979343-44983832:-|nuORF;ENST00000493599.1_1_20:44979343-44980935:-|nuORF	nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	MULTI-SECPEP	A375_MHC_IP_R2	2	485.726318359375	2	486.292225	970.569897	-0.54437	-0.00026472	0.25379	0.00012342	-0.29058	-0.00014131	486.2925396489286	119.4	0.71304	119.93	119.73	120.45	0.5321					16	13	2	0	0	0	0.14422	1	45498	45498		61.357	0	1	7940100			31472	1708	22753	22920	30710	30710					0.08343511245811897
LLGEAESFW	9	Unmodified	_LLGEAESFW_					0	0	0		ENST00000428151.1_1_1:38513235-38568154:+|nuORF	ENST00000428151.1_1_1:38513235-38568154:+|nuORF	ENST00000428151.1_1_1:38513235-38568154:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	526.6572265625	2	526.258382	1050.50221	-0.85396	-0.0004494	-0.59669	-0.00031401	-1.4506	-0.00076341	526.2580599910688	67.797	1.0677	67.797	66.99	68.057	0					28	20	3	0	0	0	0.67221	1	24555	24555		8.5933	0	1	2977300			31473	11831	22754	22921	30711	30711					-0.021019386850184674
LLGELPRL	8	Unmodified	_LLGELPRL_					0	0	0		nc|ENSG00000196352|P08174-2|CD55;nc|ENSG00000196352|P08174-5|CD55;nc|ENSG00000196352|P08174-4|CD55;ENSG00000196352|ENST00000367064|CD55;nc|ENSG00000196352|P08174-3|CD55;ENST00000488171.5_1_1:207495110-207510876:+|nuORF;nc|ENSG00000196352|P08174-6|CD55;nc|ENSG00000196352|P08174-7|CD55	nc|ENSG00000196352|P08174-2|CD55	nc|ENSG00000196352|P08174-2|CD55	MULTI-SECPEP	A375_MHC_IP_R1	1	456.1893005371094	2	455.789653	909.564752	-0.34061	-0.00015525	0.77204	0.00035189	0.43143	0.00019664	455.7897477663251	89.976	0.45437	89.976	89.73	90.184	0					17	8	3	0	0	0	0.46048	1	33052	33052		54.774	12.679	1	1930700			31474	14834	22755	22922	30712	30712					0.1063525217384722
LLGELPRL	8	Unmodified	_LLGELPRL_					0	0	0		nc|ENSG00000196352|P08174-2|CD55;nc|ENSG00000196352|P08174-5|CD55;nc|ENSG00000196352|P08174-4|CD55;ENSG00000196352|ENST00000367064|CD55;nc|ENSG00000196352|P08174-3|CD55;ENST00000488171.5_1_1:207495110-207510876:+|nuORF;nc|ENSG00000196352|P08174-6|CD55;nc|ENSG00000196352|P08174-7|CD55	nc|ENSG00000196352|P08174-2|CD55	nc|ENSG00000196352|P08174-2|CD55	MULTI-SECPEP	A375_MHC_IP_R2	2	456.18914794921875	2	455.789653	909.564752	-0.14951	-6.8143E-05	0.37462	0.00017075	0.22512	0.00010261	455.7893968733556	89.115	0.60399	89.846	89.431	90.035	0.7318					20	11	3	0	0	0	0.30564	1	33896	33896		64.236	20.378	1	1280200			31475	14834	22755	22922	30713	30713					0.1063525217384722
LLGELPRLLLL	11	Unmodified	_LLGELPRLLLL_					0	0	0		nc|ENSG00000196352|P08174-2|CD55;nc|ENSG00000196352|P08174-5|CD55;nc|ENSG00000196352|P08174-4|CD55;ENSG00000196352|ENST00000367064|CD55;nc|ENSG00000196352|P08174-3|CD55;ENST00000488171.5_1_1:207495110-207510876:+|nuORF;nc|ENSG00000196352|P08174-6|CD55;nc|ENSG00000196352|P08174-7|CD55	nc|ENSG00000196352|P08174-2|CD55	nc|ENSG00000196352|P08174-2|CD55	MULTI-MSMS	A375_MHC_IP_R1	1	625.8153686523438	2	625.415749	1248.81694	-0.77396	-0.00048405	0.17452	0.00010915	-0.59944	-0.0003749	625.4157749383987	131.15	0.35352	131.15	131.02	131.38	0					20	6	4	0	0	0	0.00010367	1	50567	50567		135.86	72.636	1	49882000			31476	14834	22756	22923	30714	30714					0.20248845464561782
LLGELPRLLLL	11	Unmodified	_LLGELPRLLLL_					0	0	0		nc|ENSG00000196352|P08174-2|CD55;nc|ENSG00000196352|P08174-5|CD55;nc|ENSG00000196352|P08174-4|CD55;ENSG00000196352|ENST00000367064|CD55;nc|ENSG00000196352|P08174-3|CD55;ENST00000488171.5_1_1:207495110-207510876:+|nuORF;nc|ENSG00000196352|P08174-6|CD55;nc|ENSG00000196352|P08174-7|CD55	nc|ENSG00000196352|P08174-2|CD55	nc|ENSG00000196352|P08174-2|CD55	MULTI-MSMS	A375_MHC_IP_R2	2	625.8150024414062	2	625.415749	1248.81694	-0.79034	-0.00049429	0.24789	0.00015504	-0.54244	-0.00033925	625.4158158696179	130.92	0.50865	131.14	131.01	131.52	0.2142					18	9	4	0	0	0	0.00028898	1	51506	51506		124.95	69.718	1	48491000			31477	14834	22756	22923	30715	30715					0.20248845464561782
LLGESSLGLL	10	Unmodified	_LLGESSLGLL_					0	0	0			REV__nc|ENSG00000108021|Q5VWN6-2|TASOR2	REV__nc|ENSG00000108021|Q5VWN6-2|TASOR2	MULTI-MSMS	A375_MHC_IP_R1	1	501.6971740722656	2	501.297507	1000.58046	-0.5446	-0.00027301	0.27177	0.00013624	-0.27283	-0.00013677	501.29733767648764	94.716	0.56126	94.716	94.446	95.007	0					20	10	3	0	0	0	0.02032	1	34810	34810		85.272	0	1	1943500	+		31478	17510	22757	22924	30716	30716					0.08019493900246744
LLGFKLSGNSH	11	Unmodified	_LLGFKLSGNSH_					0	0	0		PCDHGA6|p.Q168L|1|0.5|ENSG00000253731|chr5:141374586-141374586|A/T|missense_variant	PCDHGA6|p.Q168L|1|0.5|ENSG00000253731|chr5:141374586-141374586|A/T|missense_variant	PCDHGA6|p.Q168L|1|0.5|ENSG00000253731|chr5:141374586-141374586|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	586.6925659179688	2	586.824755	1171.63496	-0.3592	-0.00021079	1.2663	0.00074312	0.90714	0.00053233	587.3273891585393	65.101	0.25145	65.101	64.954	65.206	0					6	4	2	0	0	0	0.81292	1	23561	23561		32.037	6.6382	1	1180700			31479	15139	22758	22925	30717	30717					0.056005057716674855
LLGFKLSGNSH	11	Unmodified	_LLGFKLSGNSH_					0	0	0		PCDHGA6|p.Q168L|1|0.5|ENSG00000253731|chr5:141374586-141374586|A/T|missense_variant	PCDHGA6|p.Q168L|1|0.5|ENSG00000253731|chr5:141374586-141374586|A/T|missense_variant	PCDHGA6|p.Q168L|1|0.5|ENSG00000253731|chr5:141374586-141374586|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	586.6923217773438	2	586.824755	1171.63496	-0.47782	-0.0002804	0.97061	0.00056958	0.4928	0.00028919	586.8250356275577	64.239	0.20399	64.98	64.85	65.054	0.74022					5	3	2	0	0	0	0.7254	1	24359	24359		20.581	3.468	1	415350			31480	15139	22758	22925	30718	30718					0.056005057716674855
LLGGAWARA	9	Unmodified	_LLGGAWARA_					0	0	0			REV__ENST00000261038.5_1_3:122514002-122525788:+|nuORF	REV__ENST00000261038.5_1_3:122514002-122525788:+|nuORF	MSMS	A375_MHC_IP_R1	1	457.67657470703125	2	457.763969	913.513385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.63	1	64.63	64.13	65.13	0								0	0	0	0.15427	1	23388	23388		14.582	2.9414	1		+		31481	23180	22759	22926	30719	30719					0.05316928199795257
LLGGVPNTNL	10	Unmodified	_LLGGVPNTNL_					0	0	0			REV__nc|ENSG00000160710|P55265-5|ADAR	REV__nc|ENSG00000160710|P55265-5|ADAR	MULTI-SECPEP	A375_MHC_IP_R1	1	499.7054748535156	2	499.287474	996.560395	-0.29319	-0.00014638	0.0070785	3.5342E-06	-0.28611	-0.00014285	499.2871461738245	82.833	0.70619	82.833	82.52	83.226	0					16	13	2	0	0	0	0.69172	1	30281	30281		32.305	0	1	1201300	+		31482	20181	22760	22927	30720	30720					0.061977429602734446
LLGHIFYV	8	Unmodified	_LLGHIFYV_					0	0	0		ENSG00000129933|ENST00000262815|MAU2;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;nc|ENSG00000129933|Q9Y6X3-3|MAU2;ENST00000587709.5_1_19:19459550-19466588:+|nuORF;ENST00000589947.7_1_19:19459550-19465349:+|nuORF	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-MSMS	A375_MHC_IP_R1	1	481.6784973144531	2	481.278921	960.543289	-0.32599	-0.00015689	-0.13696	-6.5918E-05	-0.46296	-0.00022281	481.2788205081112	101.96	0.4061	101.96	101.75	102.15	0					13	7	2	0	0	0	0.2379	1	37500	37500		64.081	39.407	1	1824500			31483	4214	22761	22928	30721	30721					0.06143867145135573
LLGHIFYV	8	Unmodified	_LLGHIFYV_					0	0	0		ENSG00000129933|ENST00000262815|MAU2;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;nc|ENSG00000129933|Q9Y6X3-3|MAU2;ENST00000587709.5_1_19:19459550-19466588:+|nuORF;ENST00000589947.7_1_19:19459550-19465349:+|nuORF	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-MSMS	A375_MHC_IP_R2	2	481.678955078125	2	481.278921	960.543289	-0.43265	-0.00020822	0.72369	0.0003483	0.29104	0.00014007	481.27903670864634	100.98	0.66711	101.74	101.39	102.06	0.76428					20	12	3	0	0	0	0.2379	1	38305	38305		64.081	39.407	1	1452300			31484	4214	22761	22928	30722	30722					0.06143867145135573
LLGKKCLV	8	Unmodified	_LLGKKCLV_					0	0	0			REV__ENSG00000138031|ENST00000679454|ADCY3	REV__ENSG00000138031|ENST00000679454|ADCY3	MULTI-SECPEP	A375_MHC_IP_R1	1	437.1818542480469	2	437.283149	872.551745	-0.35163	-0.00015376	0.69171	0.00030247	0.34008	0.00014871	437.2834999195164	66.615	0.91513	66.615	65.972	66.887	0					24	17	2	0	0	0	0.95327	1	23961	23961		11.114	10.321	1	4382700	+		31485	19057	22762	22929	30723	30723					0.11037097790108419
LLGKLPEL	8	Unmodified	_LLGKLPEL_					0	0	0		nc|ENSG00000123358|P22736-2|NR4A1;ENSG00000123358|ENST00000394825|NR4A1;nc|ENSG00000153234|P43354-2|NR4A2;ENSG00000153234|ENST00000339562|NR4A2	nc|ENSG00000123358|P22736-2|NR4A1;nc|ENSG00000153234|P43354-2|NR4A2	nc|ENSG00000123358|P22736-2|NR4A1	MULTI-MSMS	A375_MHC_IP_R1	1	442.186279296875	2	441.786579	881.558604	-0.29488	-0.00013027	0.11898	5.2563E-05	-0.1759	-7.7711E-05	441.7865595004087	84.892	0.56305	84.892	84.647	85.21	0					20	10	3	0	0	0	0.11362	1	31110	31110		92.491	18.069	1	2945100			31486	3841;6019	22763	22930	30724	30724					0.11308733942325944
LLGKLPEL	8	Unmodified	_LLGKLPEL_					0	0	0		nc|ENSG00000123358|P22736-2|NR4A1;ENSG00000123358|ENST00000394825|NR4A1;nc|ENSG00000153234|P43354-2|NR4A2;ENSG00000153234|ENST00000339562|NR4A2	nc|ENSG00000123358|P22736-2|NR4A1;nc|ENSG00000153234|P43354-2|NR4A2	nc|ENSG00000123358|P22736-2|NR4A1	MULTI-SECPEP	A375_MHC_IP_R2	2	442.1864929199219	2	441.786579	881.558604	-0.27896	-0.00012324	0.28724	0.0001269	0.0082831	3.6594E-06	441.7865866820206	83.88	0.46155	84.619	84.407	84.868	0.73962					19	8	3	0	0	0	0.1561	1	31896	31896		103.75	29.326	1	1926000			31487	3841;6019	22763	22930	30725	30725					0.11308733942325944
LLGKVYVV	8	Unmodified	_LLGKVYVV_					0	0	0		ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	MULTI-SECPEP	A375_MHC_IP_R1	1	446.18939208984375	2	445.789121	889.56369	-0.02095	-9.3393E-06	0.40962	0.0001826	0.38867	0.00017327	445.7892043228968	68.743	0.70931	68.743	68.463	69.173	0					27	13	3	0	0	0	0.84748	1	24920	24920		28.487	10.352	1	7470500			31488	3247	22764	22931	30726	30726					0.11449037804948148
LLGKVYVV	8	Unmodified	_LLGKVYVV_					0	0	0		ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	MULTI-SECPEP	A375_MHC_IP_R2	2	446.18902587890625	2	445.789121	889.56369	-0.32091	-0.00014306	0.30532	0.00013611	-0.015585	-6.9476E-06	445.78915858325024	67.757	0.66295	68.493	68.205	68.868	0.73614					26	12	3	0	0	0	0.84748	1	25636	25636		28.487	13.905	1	4752900			31489	3247	22764	22931	30727	30727					0.11449037804948148
LLGMFGCL	8	Unmodified	_LLGMFGCL_					0	0	0		nc|ENSG00000188596|Q96N23-2|CFAP54;ENST00000342887.1_1_12:97043703-97159031:+|nuORF	nc|ENSG00000188596|Q96N23-2|CFAP54	nc|ENSG00000188596|Q96N23-2|CFAP54	MSMS	A375_MHC_IP_R2	2	427.1868591308594	2	427.21916	852.423767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.971	1	68.706	68.206	69.206	0.73511								0	0	0	0.16876	1	25759	25759		6.3541	0	1				31490	14824	22765	22932	30728	30728					-0.008347857954390747
LLGMLVASV	9	Unmodified	_LLGMLVASV_					0	0	0			REV__ENSG00000091157|ENST00000254442|WDR7	REV__ENSG00000091157|ENST00000254442|WDR7	MSMS	A375_MHC_IP_R1	1	451.68963623046875	2	451.772614	901.530675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.946	1	65.946	65.446	66.446	0								0	0	0	0.14812	1	23880	23880		24.674	0	1		+		31491	16946	22766	22933	30729	30729					0.07597087690601256
LLGNELCSL	9	Unmodified	_LLGNELCSL_					0	0	0			REV__nc|ENSG00000141258|O43147-5|SGSM2;REV__ENST00000473458.5_1_22:25240737-25320238:+|nuORF	REV__nc|ENSG00000141258|O43147-5|SGSM2	MULTI-SECPEP	A375_MHC_IP_R2	2	480.6918640136719	2	481.254785	960.495018	-0.46608	-0.0002243	-0.026256	-1.2636E-05	-0.49234	-0.00023694	481.2546157539734	84.399	0.86323	85.135	84.711	85.574	0.73601					21	16	2	0	0	0	0.3607	1	31992	31992		26.884	0	1	1203900	+		31492	19252;20727	22767	22934	30730	30730					0.01319005442917387
LLGNELEPL	9	Unmodified	_LLGNELEPL_					0	0	0		ENST00000490851.5_1_7:18832955-19035682:+|nuORF;nc|ENSG00000048052|Q9UKV0-2|HDAC9;nc|ENSG00000048052|Q9UKV0|HDAC9;nc|ENSG00000048052|Q9UKV0-6|HDAC9;nc|ENSG00000048052|Q9UKV0-5|HDAC9;ENSG00000048052|ENST00000686413|HDAC9	ENST00000490851.5_1_7:18832955-19035682:+|nuORF	ENST00000490851.5_1_7:18832955-19035682:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	499.6816101074219	2	499.281857	996.549162	-0.1759	-8.7825E-05	-0.47636	-0.00023784	-0.65227	-0.00032566	499.28172799319367	109.59	0.45881	109.59	109.37	109.83	0					12	8	2	0	0	0	0.47368	1	40222	40222		34.102	0	1	1458600			31493	1210	22768	22935	30731	30731					0.05074920866127286
LLGNKIYH	8	Unmodified	_LLGNKIYH_					0	0	0		ENST00000261601.7_1_18:214569-214626:+|nuORF	ENST00000261601.7_1_18:214569-214626:+|nuORF	ENST00000261601.7_1_18:214569-214626:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	479.1921081542969	2	479.279452	956.544351	-0.42084	-0.0002017	-0.077341	-3.7068E-05	-0.49818	-0.00023877	479.2792951008792	63.797	0.46121	63.797	63.529	63.99	0					14	8	3	0	0	0	0.90224	1	23100	23100		13.508	0	1	1517100			31494	10285	22769	22936	30732	30732					0.06434081514032641
LLGNRPAA	8	Unmodified	_LLGNRPAA_					0	0	0		ENST00000335312.7_1_19:3631143-3631773:-|nuORF	ENST00000335312.7_1_19:3631143-3631773:-|nuORF	ENST00000335312.7_1_19:3631143-3631773:-|nuORF	MSMS	A375_MHC_IP_R2	2	406.2678527832031	2	406.24287	810.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.494	1	53.246	52.746	53.746	0.75225								0	0	0	0.16876	1	19787	19787		6.3541	0.59368	1				31495	10807	22770	22937	30733	30733					0.058369527914123864
LLGPATVSL	9	Unmodified	_LLGPATVSL_					0	0	0		tr|U7SFX9|U7SFX9_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02273PE=4SV=1	tr|U7SFX9|U7SFX9_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02273PE=4SV=1	tr|U7SFX9|U7SFX9_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02273PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	435.6223449707031	2	435.768386	869.522219	-0.085315	-3.7177E-05	-0.10075	-4.3903E-05	-0.18606	-8.108E-05	435.7681131467492	94.133	0.35409	94.878	94.717	95.071	0.74473					10	6	2	0	0	0	0.48581	1	35799	35799		32.117	10.37	1	872240			31496	29398	22771	22938	30734	30734					0.08223857045607019
LLGPGKAG	8	Unmodified	_LLGPGKAG_					0	0	0		ENST00000325980.9_1_10:135054694-135055015:+|nuORF	ENST00000325980.9_1_10:135054694-135055015:+|nuORF	ENST00000325980.9_1_10:135054694-135055015:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	357.1209411621094	2	356.721239	711.427924	0.11927	4.2546E-05	-0.46672	-0.00016649	-0.34745	-0.00012394	356.72104713040454	62.289	0.71663	62.289	62.046	62.762	0					25	13	2	0	0	0	0.97144	1	22480	22480		9.3474	0	1	3091400			31497	10726	22772	22939	30735	30735					0.06066763014132448
LLGPGKAG	8	Unmodified	_LLGPGKAG_					0	0	0		ENST00000325980.9_1_10:135054694-135055015:+|nuORF	ENST00000325980.9_1_10:135054694-135055015:+|nuORF	ENST00000325980.9_1_10:135054694-135055015:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	356.3094177246094	2	356.721239	711.427924	-0.52835	-0.00018847	-0.039105	-1.3949E-05	-0.56746	-0.00020242	356.72120494833416	61.283	0.65454	62.028	61.819	62.473	0.74503					27	12	3	0	0	0	0.93416	1	23277	23277		14.582	0	1	3024600			31498	10726	22772	22939	30736	30736					0.06066763014132448
LLGPPPVGV	9	Unmodified	_LLGPPPVGV_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;CIZ1|p.S158F|1|0.08|ENSG00000148337|chr9:128185662-128185662|G/A|missense_variant;ENST00000476727.6_1_9:130931703-130953136:-|nuORF	nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-MSMS	A375_MHC_IP_R1	1	848.587158203125	1	848.524016	847.516739	-0.43096	-0.00036568	0.32184	0.00027309	-0.10911	-9.2584E-05	848.5242184910692	95.178	3.3485	95.178	94.599	97.948	0					153	65	5	0	0	0	0.22067	2	35538	35538;35557		36.466	27.119	1	194180000			31499	5734	22773	22940	30737;30738	30737					0.08688178253805745
LLGPPPVGV	9	Unmodified	_LLGPPPVGV_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;CIZ1|p.S158F|1|0.08|ENSG00000148337|chr9:128185662-128185662|G/A|missense_variant;ENST00000476727.6_1_9:130931703-130953136:-|nuORF	nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-SECPEP	A375_MHC_IP_R1	1	425.1659240722656	2	424.765646	847.516739	-0.2182	-9.2684E-05	0.5965	0.00025337	0.3783	0.00016069	424.7658457045566	95.236	1.5212	95.236	94.701	96.223	0					80	29	4	0	0	0	0.010994	1	35099	35099		126.6	78.254	1	34474000			31500	5734	22773	22940	30739	30739					0.08688178253805745
LLGPPPVGV	9	Unmodified	_LLGPPPVGV_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;CIZ1|p.S158F|1|0.08|ENSG00000148337|chr9:128185662-128185662|G/A|missense_variant;ENST00000476727.6_1_9:130931703-130953136:-|nuORF	nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-MSMS	A375_MHC_IP_R2	2	848.2769775390625	1	848.524016	847.516739	-0.46986	-0.00039869	0.44341	0.00037624	-0.026456	-2.2448E-05	848.5243274234472	94.402	3.4484	95.147	94.566	98.014	0.74474					161	67	5	0	0	0	0.011986	2	35786	35786;36751		93.763	45.417	1	185660000			31501	5734	22773	22940	30740;30741	30740					0.08688178253805745
LLGPPPVGV	9	Unmodified	_LLGPPPVGV_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;CIZ1|p.S158F|1|0.08|ENSG00000148337|chr9:128185662-128185662|G/A|missense_variant;ENST00000476727.6_1_9:130931703-130953136:-|nuORF	nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-MSMS	A375_MHC_IP_R2	2	425.1658630371094	2	424.765646	847.516739	0.053897	2.2893E-05	0.35865	0.00015234	0.41255	0.00017524	424.76574433940493	94.497	2.03	95.241	94.566	96.596	0.74474					97	39	4	0	0	0	0.0096211	1	35968	35968		126.6	69.129	1	40534000			31502	5734	22773	22940	30742	30742					0.08688178253805745
LLGPPRPGWW	10	Unmodified	_LLGPPRPGWW_					0	0	0		ENST00000555567.5_1_14:75408765-75409119:-|nuORF	ENST00000555567.5_1_14:75408765-75409119:-|nuORF	ENST00000555567.5_1_14:75408765-75409119:-|nuORF	MSMS	A375_MHC_IP_R2	2	393.594482421875	3	393.553826	1177.63965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.517	1	22.136	21.636	22.636	0.61932								0	0	0	0.15435	1	6781	6781		3.5871	0	1				31503	13432	22774	22941	30743	30743					0.057934347050832
LLGPRLVLA	9	Unmodified	_LLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-SECPEP	A375_MHC_IP_R1	1	476.61529541015625	2	476.32112	950.627687	-0.30482	-0.00014519	0.056121	2.6732E-05	-0.2487	-0.00011846	476.32103609625943	92.975	0.66125	92.975	92.617	93.279	0					15	12	2	0	0	0	0.50702	1	34110	34110		19.257	4.4187	1	637950			31504	7497	22775	22942	30744	30744					0.15039817961894641
LLGPRLVLA	9	Unmodified	_LLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-SECPEP	A375_MHC_IP_R1	1	476.7207336425781	2	476.32112	950.627687	-0.58194	-0.00027719	0.28465	0.00013558	-0.29729	-0.00014161	476.32122910962914	89.705	3.2422	89.705	89.375	92.617	0					148	63	5	0	0	0	0.1277	1	32883	32883		54.774	14.816	1	231150000			31505	7497	22775	22942	30745	30745					0.15039817961894641
LLGPRLVLA	9	Unmodified	_LLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	A375_MHC_IP_R2	2	476.7207336425781	2	476.32112	950.627687	-0.45923	-0.00021874	-0.21648	-0.00010311	-0.67571	-0.00032186	476.32099043546276	88.674	2.7879	89.406	89.077	91.865	0.7318					143	54	5	0	0	0	0.077132	1	33904	33904		54.774	12.679	1	289110000			31506	7497	22775	22942	30746	30746					0.15039817961894641
LLGQATLVW	9	Unmodified	_LLGQATLVW_					0	0	0			REV__ENSG00000165684|ENST00000684778|SNAPC4	REV__ENSG00000165684|ENST00000684778|SNAPC4	MULTI-SECPEP	A375_MHC_IP_R1	1	501.1946716308594	2	500.794935	999.575317	-0.2815	-0.00014097	-0.46992	-0.00023533	-0.75142	-0.00037631	500.79475292975604	88.434	0.61125	88.434	88.256	88.867	0					18	11	2	0	0	0	0.3213	1	32491	32491		37.974	0	1	2675300	+		31507	20611	22776	22943	30747	30747					0.07551234828281395
LLGRALPL	8	Unmodified	_LLGRALPL_					0	0	0			REV__ENST00000504406.5_1_5:176829295-176830555:-|nuORF	REV__ENST00000504406.5_1_5:176829295-176830555:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	427.1868591308594	2	426.786913	851.559273	-0.098429	-4.2008E-05	0.36916	0.00015755	0.27073	0.00011554	426.78695762545937	67.985	0.60979	68.72	68.409	69.019	0.73512					17	11	2	0	0	0	0.8211	1	25759	25759		38.151	0	1	1201900	+		31508	25526	22777	22944	30748	30748					0.12755573382037255
LLGRFHTLLW	10	Unmodified	_LLGRFHTLLW_					0	0	0			REV__ENSG00000182050|ENST00000611864|MGAT4C	REV__ENSG00000182050|ENST00000611864|MGAT4C	MULTI-SECPEP	A375_MHC_IP_R1	1	628.9695434570312	2	628.369133	1254.72371	-0.47827	-0.00030053	-0.14418	-9.0595E-05	-0.62245	-0.00039113	628.3690503322315	88.789	0.6094	88.789	88.561	89.171	0					17	11	2	0	0	0	0.93961	1	32708	32708		6.2058	0.47393	1	2492600	+		31509	21671	22778	22945	30749	30749					0.10653965801998311
LLGRGGRR	8	Unmodified	_LLGRGGRR_					0	0	0		ENST00000540557.1_1_9:38016114-38068223:-|nuORF;SHB|p.T16Dfs*230|1|0.22|ENSG00000107338|chr9:38068601-38068602|-/T|frameshift_variant	ENST00000540557.1_1_9:38016114-38068223:-|nuORF	ENST00000540557.1_1_9:38016114-38068223:-|nuORF	MSMS	A375_MHC_IP_R2	2	442.6897277832031	2	442.780485	883.546417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.985	1	49.743	49.243	50.243	0.75737								0	0	0	0.16876	1	18400	18400		14.582	0	1				31510	13270	22779	22946	30750	30750					0.09998555042523094
LLGRLPWRPWR	11	Unmodified	_LLGRLPWRPWR_					0	0	0		ENST00000403682.7_1_22:20748811-20761255:+|nuORF	ENST00000403682.7_1_22:20748811-20761255:+|nuORF	ENST00000403682.7_1_22:20748811-20761255:+|nuORF	MSMS	A375_MHC_IP_R1	1	725.5634155273438	2	725.43313	1448.85171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.65	1	134.65	134.15	135.15	0								0	0	0	0.16334	1	51922	51922		1.3295	0.9789	1				31511	11575	22780	22947	30751	30751					0.14523526115885943
LLGRPGPK	8	Unmodified	_LLGRPGPK_					0	0	0			REV__COL5A1|p.E677K|1|0.11|ENSG00000130635|chr9:134763732-134763732|G/A|missense_variant	REV__COL5A1|p.E677K|1|0.11|ENSG00000130635|chr9:134763732-134763732|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	419.2728576660156	2	419.268887	836.523222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.815	1	22.815	22.315	23.315	0								0	0	0	0.16876	1	6165	6165		0.79363	0	1		+		31512	15830	22781	22948	30752	30752					0.09842116205186358
LLGRTLSL	8	Unmodified	_LLGRTLSL_					0	0	0		ENST00000263642.2_1_2:163174829-163175141:-|nuORF	ENST00000263642.2_1_2:163174829-163175141:-|nuORF	ENST00000263642.2_1_2:163174829-163175141:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	437.1815185546875	2	436.781828	871.549102	-0.34284	-0.00014975	0.0098206	4.2895E-06	-0.33302	-0.00014546	436.7817743042462	65.132	0.40579	65.87	65.562	65.968	0.73811					17	7	3	0	0	0	0.90224	1	24659	24659		13.508	0	1	2803900			31513	10321	22782	22949	30753	30753					0.10818965656812907
LLGRVYDV	8	Unmodified	_LLGRVYDV_					0	0	0		ENSG00000167740|ENST00000301391|CYB5D2	ENSG00000167740|ENST00000301391|CYB5D2	ENSG00000167740|ENST00000301391|CYB5D2	MULTI-SECPEP	A375_MHC_IP_R1	1	468.1713562011719	2	467.77146	933.528367	-0.27451	-0.00012841	0.58336	0.00027288	0.30885	0.00014447	467.7716983124322	60	0.50855	60	59.701	60.21	0					16	9	2	0	0	0	0.76996	1	21572	21572		43.858	5.8843	1	3005800			31514	7219	22783	22950	30754	30754					0.05894375277136987
LLGSAHEV	8	Unmodified	_LLGSAHEV_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	A375_MHC_IP_R2	2	413.6268615722656	2	413.226885	824.439217	-0.017984	-7.4317E-06	-0.28039	-0.00011587	-0.29838	-0.0001233	413.22668015445623	30.975	1.0193	31.694	31.467	32.486	0.71857					30	19	2	0	0	0	0.17015	1	10923	10923		70.716	14.174	1	12801000			31515	9183	22784	22951	30755	30755					0.019975403176204054
LLGSAYKRAER	11	Unmodified	_LLGSAYKRAER_					0	0	0			REV__ENSG00000004975|ENST00000005340|DVL2	REV__ENSG00000004975|ENST00000005340|DVL2	MULTI-MSMS	A375_MHC_IP_R1	1	632.7608642578125	2	632.362036	1262.70952	-0.88038	-0.00055672	-0.947	-0.00059885	-1.8274	-0.0011556	632.3613323643175	131.67	0.85657	131.67	131.43	132.28	0					32	16	2	0	0	0	0.73378	1	50746	50746		5.2969	2.3016	1	31257000	+		31516	16107	22785	22952	30756	30756					0.08867268583003352
LLGSAYKRAER	11	Unmodified	_LLGSAYKRAER_					0	0	0			REV__ENSG00000004975|ENST00000005340|DVL2	REV__ENSG00000004975|ENST00000005340|DVL2	MULTI-SECPEP	A375_MHC_IP_R1	1	632.7608642578125	2	632.362036	1262.70952	-0.88038	-0.00055672	-0.947	-0.00059885	-1.8274	-0.0011556	632.3613323643175	131.67	0.85657	131.67	131.43	132.28	0					32	16	2	0	0	0	0.99738	1	50746	50746		5.2969	2.3016	1	31257000	+		31517	16107	22785	22952	30757	30757					0.08867268583003352
LLGSAYKRAER	11	Unmodified	_LLGSAYKRAER_					0	0	0			REV__ENSG00000004975|ENST00000005340|DVL2	REV__ENSG00000004975|ENST00000005340|DVL2	MULTI-MSMS	A375_MHC_IP_R2	2	632.7614135742188	2	632.362036	1262.70952	-0.77998	-0.00049323	-0.60231	-0.00038087	-1.3823	-0.00087411	632.3615530699533	131.53	0.86119	131.72	131.49	132.35	0.18953					30	16	2	0	0	0	0.73378	1	51712	51712		5.2969	2.3016	1	35976000	+		31518	16107	22785	22952	30758	30758					0.08867268583003352
LLGSDAHL	8	Unmodified	_LLGSDAHL_					0	0	0		MBD6|p.Q694Pfs*23|1|0.4|ENSG00000166987|chr12:57527218-57527219|-/C|frameshift_variant;ENSG00000166987|ENST00000355673|MBD6	MBD6|p.Q694Pfs*23|1|0.4|ENSG00000166987|chr12:57527218-57527219|-/C|frameshift_variant	MBD6|p.Q694Pfs*23|1|0.4|ENSG00000166987|chr12:57527218-57527219|-/C|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	413.27850341796875	2	413.226885	824.439217	-0.017984	-7.4317E-06	-0.28039	-0.00011587	-0.29838	-0.0001233	413.22668015445623	30.975	1.0193	31.694	31.467	32.486	0.71857					30	19	2	0	0	0	0.70843	1	11030	11030		32.117	0	1	12801000			31519	7147	22786	22953	30759	30759					0.019975403176204054
LLGSGKVTDR	10	Unmodified	_LLGSGKVTDR_					0	0	0		nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-3|PKN2	nc|ENSG00000065243|Q16513-2|PKN2	nc|ENSG00000065243|Q16513-2|PKN2	MULTI-MSMS	A375_MHC_IP_R1	1	522.694580078125	2	523.303655	1044.59276	-0.34592	-0.00018102	-0.46476	-0.00024321	-0.81068	-0.00042423	523.303277655102	125.88	1.9675	125.88	125.45	127.42	0					50	20	3	0	0	0	0.71564	1	48024	48024		5.2969	1.3525	1	83856000			31520	1372	22787	22954	30760	30760					0.07224530363282611
LLGSLMITCV	10	Unmodified	_LLGSLMITCV_					0	0	0		ENSG00000128519|ENST00000249284|TAS2R16	ENSG00000128519|ENST00000249284|TAS2R16	ENSG00000128519|ENST00000249284|TAS2R16	MSMS	A375_MHC_IP_R1	1	525.22705078125	2	525.290314	1048.56607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.77	1	132.77	132.27	133.27	0								0	0	0	0.15332	1	51193	51193		10.074	3.3508	1				31521	4141	22788	22955	30761	30761					0.04373382156063599
LLGSVVHEV	9	Unmodified	_LLGSVVHEV_					0	0	0		ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	MULTI-SECPEP	A375_MHC_IP_R2	2	477.176513671875	2	476.776742	951.538931	-0.86437	-0.00041211	0.48419	0.00023085	-0.38017	-0.00018126	476.7768147955867	58.564	0.40736	59.313	59.083	59.491	0.74894					14	7	3	0	0	0	0.4261	1	22187	22187		30.637	8.8899	1	1835300			31522	2414	22789	22956	30762	30762					0.061223579315765164
LLGSVVHEV	9	Unmodified	_LLGSVVHEV_					0	0	0		ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	MULTI-MATCH	A375_MHC_IP_R1	1		2	476.776742	951.538931	-0.50529	-0.00024091	0.45084	0.00021495	-0.054452	-2.5962E-05	476.7773912526395	59.502	0.65982	59.502	59.143	59.803	0	0.094261	-2.8576E-05	NaN	30.637	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1121800			31523	2414	22789	22956							0.061223579315765164
LLGTPGVSLL	10	Unmodified	_LLGTPGVSLL_					0	0	0		nc|ENSG00000146094|Q7L591-2|DOK3;nc|ENSG00000146094|Q7L591-4|DOK3;nc|ENSG00000146094|Q7L591-3|DOK3	nc|ENSG00000146094|Q7L591-2|DOK3	nc|ENSG00000146094|Q7L591-2|DOK3	MULTI-MSMS	A375_MHC_IP_R2	2	485.70208740234375	2	485.302593	968.590633	-0.62418	-0.00030292	0.014542	7.0573E-06	-0.60964	-0.00029586	485.3025541634638	74.297	0.50861	75.035	74.807	75.315	0.73752					14	9	2	0	0	0	0.6806	1	28215	28215		14.838	0	1	2336700			31524	14664	22790	22957	30763	30763					0.10508101625475774
LLGTRPGG	8	Unmodified	_LLGTRPGG_					0	0	0			REV__UCN3|p.P23L|1|0.2|ENSG00000178473|chr10:5373788-5373788|C/T|missense_variant	REV__UCN3|p.P23L|1|0.2|ENSG00000178473|chr10:5373788-5373788|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	386.12957763671875	2	385.729595	769.444637	0.72773	0.00028071	-0.36845	-0.00014212	0.35928	0.00013858	385.72937574497394	49.209	0.60815	49.209	48.983	49.591	0					28	11	3	0	0	0	0.64636	1	17392	17392		34.102	7.2188	1	7663900	+		31525	28942	22791	22958	30764	30764					0.05069263900099941
LLGTRPGG	8	Unmodified	_LLGTRPGG_					0	0	0			REV__UCN3|p.P23L|1|0.2|ENSG00000178473|chr10:5373788-5373788|C/T|missense_variant	REV__UCN3|p.P23L|1|0.2|ENSG00000178473|chr10:5373788-5373788|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	386.1296691894531	2	385.729595	769.444637	-0.051891	-2.0016E-05	0.18675	7.2034E-05	0.13486	5.2018E-05	385.729615358209	48.193	0.60366	48.951	48.679	49.282	0.7577					23	11	3	0	0	0	0.86263	1	18067	18067		26.884	3.7352	1	9579200	+		31526	28942	22791	22958	30765	30765					0.05069263900099941
LLGVGVKA	8	Unmodified	_LLGVGVKA_					0	0	0			REV__tr|U7T8R7|U7T8R7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00145PE=3SV=1	REV__tr|U7T8R7|U7T8R7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00145PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	379.1396484375	2	378.752539	755.490525	-0.10079	-3.8174E-05	-0.037138	-1.4066E-05	-0.13793	-5.2241E-05	378.75250409564643	41.282	0.40496	42.056	41.895	42.3	0.77451					10	7	2	0	0	0	0.95423	1	15380	15380		12.532	3.1841	1	1686700	+		31527	28893	22792	22959	30766	30766					0.10299909082323211
LLGVGVKA	8	Unmodified	_LLGVGVKA_					0	0	0			REV__tr|U7T8R7|U7T8R7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00145PE=3SV=1	REV__tr|U7T8R7|U7T8R7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00145PE=3SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	378.752539	755.490525	0.40474	0.0001533	-0.0055066	-2.0856E-06	0.39923	0.00015121	378.7524215945654	42.253	0.30387	42.253	42.032	42.336	0	0.098567	1.326E-05	NaN	7.9102	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	945070	+		31528	28893	22792	22959							0.10299909082323211
LLGWLFAPV	9	Unmodified	_LLGWLFAPV_					0	0	0		ENSG00000140675|ENST00000330498|SLC5A2;nc|ENSG00000140675|P31639-2|SLC5A2	ENSG00000140675|ENST00000330498|SLC5A2	ENSG00000140675|ENST00000330498|SLC5A2	MULTI-SECPEP	A375_MHC_IP_R2	2	508.2000732421875	2	508.302396	1014.59024	-1.0846	-0.0005513	0.097835	4.973E-05	-0.98675	-0.00050157	508.30239749758493	59.997	0.70926	60.744	60.299	61.008	0.74714					20	13	2	0	0	0	0.4045	1	22666	22666		14.582	0	1	8250400			31529	5175	22793	22960	30767	30767					0.08352726696273294
LLGWWWCL	8	Unmodified	_LLGWWWCL_					0	0	0			REV__ENSG00000153162|ENST00000283147|BMP6	REV__ENSG00000153162|ENST00000283147|BMP6	MULTI-SECPEP	A375_MHC_IP_R1	1	1076.3408203125	1	1076.53862	1075.53134	-0.087875	-9.46E-05	-3.1188	-0.0033575	-3.2067	-0.0034521	1076.5387114957005	120.25	1.0619	120.25	119.84	120.91	0					26	20	2	0	0	0	0.95327	1	44556	44556		6.3541	1.0572	1	34497000	+		31530	19830	22794	22961	30768	30768					-0.0034007286969881534
LLGYLVSLGW	10	Unmodified	_LLGYLVSLGW_					0	0	0			REV__nc|ENSG00000262628|P47884|OR1D4	REV__nc|ENSG00000262628|P47884|OR1D4	MULTI-MSMS	A375_MHC_IP_R1	1	561.221923828125	2	560.823692	1119.63283	-0.77007	-0.00043187	-2.3753	-0.0013321	-3.1454	-0.001764	560.821984509636	135.92	0.30722	135.92	135.74	136.05	0					9	5	2	0	0	0	0.64579	1	52398	52398		20.454	0	1	1569400	+		31531	22918	22795	22962	30769	30769					0.07780077033862653
LLHACIPC	8	Unmodified	_LLHACIPC_					0	0	0		nc|ENSG00000048462|Q02223-2|TNFRSF17;ENSG00000048462|ENST00000053243|TNFRSF17	nc|ENSG00000048462|Q02223-2|TNFRSF17	nc|ENSG00000048462|Q02223-2|TNFRSF17	MSMS	A375_MHC_IP_R1	1	435.2819519042969	2	435.222234	868.429915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.7	1	85.7	85.2	86.2	0								0	0	0	0.16876	1	31412	31412		2.8892	0.31174	1				31532	1213	22796	22963	30770	30770					-0.009562675639244844
LLHCPTPCPL	10	Unmodified	_LLHCPTPCPL_					0	0	0			REV__MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant	REV__MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6353759765625	2	547.28028	1092.54601	-0.744	-0.00040718	-1.3647	-0.00074685	-2.1087	-0.001154	547.2793040663265	86.092	0.91123	86.092	85.616	86.527	0					27	17	3	0	0	0	0.85226	1	31450	31450		6.2058	1.4498	1	3892800	+		31533	17384	22797	22964	30771	30771					0.0034363121612841496
LLHDGIPVV	9	Unmodified	_LLHDGIPVV_					0	0	0		APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1;nc|ENSG00000120868|O14727-6|APAF1	APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant	APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	482.1871643066406	2	481.78711	961.559667	-0.36608	-0.00017637	2.9027	0.0013985	2.5367	0.0012221	481.78696986516223	74.618	0.66077	74.618	74.349	75.009	0					22	12	2	0	0	0	0.3243	1	27191	27191		44.407	10.22	1	2183500			31534	156	22798	22965	30772	30772					0.07734948311224343
LLHDGIPVV	9	Unmodified	_LLHDGIPVV_					0	0	0		APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1;nc|ENSG00000120868|O14727-6|APAF1	APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant	APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	482.18682861328125	2	481.78711	961.559667	-0.53908	-0.00025972	-0.40062	-0.00019302	-0.9397	-0.00045274	481.7870647975959	73.738	0.46083	74.473	74.192	74.653	0.73541					15	8	2	0	0	0	0.3243	1	27961	27961		44.407	12.29	1	2032300			31535	156	22798	22965	30773	30773					0.07734948311224343
LLHDPSGYLA	10	Unmodified	_LLHDPSGYLA_					0	0	0		chr12:55957573-55957923|269|491.97|0.08|12.54|-|0|None,PMEL|1	chr12:55957573-55957923|269|491.97|0.08|12.54|-|0|None,PMEL|1	chr12:55957573-55957923|269|491.97|0.08|12.54|-|0|None,PMEL|1	MULTI-SECPEP	A375_MHC_IP_R2	2	543.6841430664062	2	543.284931	1084.55531	-0.71041	-0.00038595	-0.10789	-5.8613E-05	-0.8183	-0.00044457	543.2847860503754	46.338	0.66118	47.103	46.805	47.466	0.76518					20	12	3	0	0	0	0.8125	1	17377	17377		24.021	3.5669	1	2457600			31536	419	22799	22966	30774	30774					0.016414390976706272
LLHEELALQWV	11	Unmodified	_LLHEELALQWV_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6;ENST00000590452.1_1_19:11339555-11339994:-|nuORF	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	A375_MHC_IP_R1	1	451.68963623046875	3	450.918722	1349.73434	-0.30252	-0.00013641	-0.17462	-7.8741E-05	-0.47714	-0.00021515	451.25294016057484	65.766	0.35539	65.766	65.616	65.972	0					13	6	3	0	0	0	0.99246	1	23880	23880		7.4771	2.7611	1	1545600			31537	4224	22800	22967	30775	30775					0.07345903665736842
LLHEENFSV	9	Unmodified	_LLHEENFSV_					0	0	0		nc|ENSG00000100207|Q9UGU0-2|TCF20;ENSG00000100207|ENST00000677622|TCF20	nc|ENSG00000100207|Q9UGU0-2|TCF20	nc|ENSG00000100207|Q9UGU0-2|TCF20	MULTI-SECPEP	A375_MHC_IP_R2	2	544.2288818359375	2	544.274564	1086.53457	-1.1822	-0.00064346	0.68061	0.00037044	-0.50162	-0.00027302	544.27492356427	59.767	0.40467	60.515	60.299	60.704	0.74714					11	7	2	0	0	0	0.63749	1	22618	22618		21.537	2.28	1	1475300			31538	2132	22801	22968	30776	30776					-0.005231512820046191
LLHEHKGKK	9	Unmodified	_LLHEHKGKK_					0	0	0		ENSG00000132155|ENST00000251849|RAF1;nc|ENSG00000132155|P04049-2|RAF1;ENST00000492690.1_1_3:12650263-12653498:-|nuORF	ENSG00000132155|ENST00000251849|RAF1	ENSG00000132155|ENST00000251849|RAF1	MULTI-MSMS	A375_MHC_IP_R1	1	364.28887939453125	3	363.889097	1088.64546	-0.0055969	-2.0366E-06	-0.12891	-4.6908E-05	-0.1345	-4.8945E-05	364.22346009850344	27.002	0.50149	27.002	26.779	27.28	0					16	9	2	0	0	0	0.64971	1	8142	8142		11.495	1.9507	1	6165400			31539	4376	22802	22969	30777	30777					0.10468533216749165
LLHEHKGKK	9	Unmodified	_LLHEHKGKK_					0	0	0		ENSG00000132155|ENST00000251849|RAF1;nc|ENSG00000132155|P04049-2|RAF1;ENST00000492690.1_1_3:12650263-12653498:-|nuORF	ENSG00000132155|ENST00000251849|RAF1	ENSG00000132155|ENST00000251849|RAF1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	363.889097	1088.64546	-0.0055969	-2.0366E-06	-0.12891	-4.6908E-05	-0.1345	-4.8945E-05	364.22346009850344	27.002	0.50149	27.002	26.779	27.28	0	0	0	NaN	11.495	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6165400			31540	4376	22802	22969							0.10468533216749165
LLHIYDIIY	9	Unmodified	_LLHIYDIIY_					0	0	0		ENST00000284425.6_1_17:67087362-67092889:-|nuORF	ENST00000284425.6_1_17:67087362-67092889:-|nuORF	ENST00000284425.6_1_17:67087362-67092889:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	581.4611206054688	2	581.828975	1161.6434	-0.41512	-0.00024153	0.0015116	8.7948E-07	-0.4136	-0.00024065	581.8287714703556	107.33	0.71164	108.08	107.79	108.51	0.75436					15	13	2	0	0	0	0.73662	1	40686	40686		5.2307	0	1	855750			31541	10442	22803	22970	30778	30778					0.0690405968828145
LLHKSTINR	9	Unmodified	_LLHKSTINR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30;DHX30|p.S1163Qfs*25|1|0.5|ENSG00000132153|chr3:47850015-47850016|-/C|frameshift_variant	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-SECPEP	A375_MHC_IP_R1	1	540.7290649414062	2	541.327465	1080.64038	-0.85124	-0.0004608	-2.1766	-0.0011783	-3.0279	-0.0016391	541.8281422159894	131.5	0.20186	131.5	131.38	131.58	0					5	3	2	0	0	0	0.69507	1	50712	50712		13.906	0	1	717980			31542	4375	22804	22971	30779	30779					0.10328229354149698
LLHLLLIKL	9	Unmodified	_LLHLLLIKL_					0	0	0		ENST00000256442.9_1_5:68473515-68473575:+|nuORF	ENST00000256442.9_1_5:68473515-68473575:+|nuORF	ENST00000256442.9_1_5:68473515-68473575:+|nuORF	MSMS	A375_MHC_IP_R1	1	359.1679382324219	3	359.258239	1074.75289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.629	1	18.629	18.129	19.129	0								0	0	0	0.15486	1	4453	4453		0	0	1				31543	10239	22805	22972	30780	30780					0.2185011009826212
LLHLTSRL	8	Unmodified	_LLHLTSRL_					0	0	0		ENST00000529704.5_1_11:67119161-67119332:-|nuORF	ENST00000529704.5_1_11:67119161-67119332:-|nuORF	ENST00000529704.5_1_11:67119161-67119332:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	476.948974609375	2	476.800552	951.58655	-0.343	-0.00016354	-0.84312	-0.000402	-1.1861	-0.00056554	476.79979723678326	141.31	0.36276	141.35	141.01	141.37	0.04216					8	6	2	0	0	0	0.972	1	55281	55281		2.3027	0	1	669140			31544	13135	22806	22973	30781	30781					0.10882056922412175
LLHMRITPF	9	Unmodified	_LLHMRITPF_					0	0	0			REV__ENST00000586527.1_1_17:73787943-73788476:+|nuORF	REV__ENST00000586527.1_1_17:73787943-73788476:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	564.1537475585938	2	564.323337	1126.63212	-0.54796	-0.00030923	1.4822	0.00083645	0.93426	0.00052722	564.3241135560808	83.995	0.50588	83.995	83.736	84.241	0					25	9	3	0	0	0	0.62767	1	30728	30728		16.942	0	1	2357100	+		31545	26391	22807	22974	30782	30782					0.07386959113136982
LLHNGEPL	8	Unmodified	_LLHNGEPL_					0	0	0		nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	447.1479797363281	2	446.747985	891.481417	-0.18746	-8.3749E-05	-0.28918	-0.00012919	-0.47664	-0.00021294	446.74779454019324	95.172	0.81123	95.172	94.853	95.665	0					25	15	2	0	0	0	0.97144	1	34960	34960		9.3474	0	1	1403800			31546	3344	22808	22975	30783	30783					0.031335157259945845
LLHNGEPL	8	Unmodified	_LLHNGEPL_					0	0	0		nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	447.1475524902344	2	446.747985	891.481417	-0.13768	-6.1507E-05	-0.26706	-0.00011931	-0.40474	-0.00018082	446.74771191185977	94.365	0.81028	95.11	94.717	95.528	0.74473					25	15	3	0	0	0	0.93416	1	35862	35862		9.3474	0	1	1433100			31547	3344	22808	22975	30784	30784					0.031335157259945845
LLHNIYPAP	9	Unmodified	_LLHNIYPAP_					0	0	0		ENST00000453819.5_1_3:15455347-15457031:-|nuORF	ENST00000453819.5_1_3:15455347-15457031:-|nuORF	ENST00000453819.5_1_3:15455347-15457031:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	518.7003784179688	2	519.292559	1036.57057	-0.89208	-0.00046325	-0.33482	-0.00017387	-1.2269	-0.00063712	519.2920113743063	54.494	0.60883	55.244	55.018	55.626	0.75075					16	11	2	0	0	0	0.75466	1	20711	20711		7.9102	0	1	2235400			31548	12103	22809	22976	30785	30785					0.0537435068549712
LLHPKPRLL	9	Unmodified	_LLHPKPRLL_					0	0	0		ENST00000360214.7_1_21:40194879-40195008:+|nuORF	ENST00000360214.7_1_21:40194879-40195008:+|nuORF	ENST00000360214.7_1_21:40194879-40195008:+|nuORF	MSMS	A375_MHC_IP_R2	2	362.9654541015625	3	362.909721	1085.70733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.886	1	24.516	24.016	25.016	0.63014								0	0	0	0.15331	1	7756	7756		16.149	4.6544	1				31549	11023	22810	22977	30786	30786					0.1679088463588414
LLHQSSTEV	9	Unmodified	_LLHQSSTEV_					0	0	0		nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1	nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1	nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1	MULTI-SECPEP	A375_MHC_IP_R1	1	507.36883544921875	2	507.266739	1012.51892	-0.32504	-0.00016488	2.8767	0.0014592	2.5516	0.0012944	507.26790723144	89.216	0.86418	89.216	88.764	89.628	0					25	16	2	0	0	0	0.47368	1	32621	32621		26.884	7.6267	1	1007500			31550	7634	22811	22978	30787	30787					0.013165622009523759
LLHRHSHY	8	Unmodified	_LLHRHSHY_					0	0	0		ENST00000344726.9_2_6:79924698-79944311:-|nuORF	ENST00000344726.9_2_6:79924698-79944311:-|nuORF	ENST00000344726.9_2_6:79924698-79944311:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	532.236572265625	2	531.783225	1061.5519	-0.51032	-0.00027138	-0.81363	-0.00043268	-1.3239	-0.00070405	531.7831277308442	53.672	0.60857	53.672	53.505	54.113	0					13	11	2	0	0	0	0.7758	1	19110	19110		10.183	1.438	1	1074700			31551	10898	22812	22979	30788	30788					0.023582338343203446
LLHRPKKSF	9	Unmodified	_LLHRPKKSF_					0	0	0			REV__ENST00000310164.2_1_X:117958660-117959212:+|nuORF	REV__ENST00000310164.2_1_X:117958660-117959212:+|nuORF	MSMS	A375_MHC_IP_R2	2	563.6477661132812	2	563.3482	1124.68185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.29	1	126.58	126.08	127.08	0.2951								0	0	0	0.15486	1	49398	49398		4.756	0	1		+		31552	23498	22813	22980	30789	30789					0.12449410113458725
LLHRRVWRRR	10	Unmodified	_LLHRRVWRRR_					0	0	0		ENST00000426174.6_1_12:124171384-124171462:+|nuORF	ENST00000426174.6_1_12:124171384-124171462:+|nuORF	ENST00000426174.6_1_12:124171384-124171462:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	725.35400390625	2	724.45272	1446.89089	-0.91934	-0.00066602	-0.21046	-0.00015247	-1.1298	-0.00081849	724.4519581619884	148.95	3.8476	148.95	146.16	150	0					580	238	7	0	0	0	0.72747	1	57212	57212		0	0	1	11619000			31553	11801	22814	22981	30790	30790					0.18531671190089583
LLHRRVWRRR	10	Unmodified	_LLHRRVWRRR_					0	0	0		ENST00000426174.6_1_12:124171384-124171462:+|nuORF	ENST00000426174.6_1_12:124171384-124171462:+|nuORF	ENST00000426174.6_1_12:124171384-124171462:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	483.7040100097656	3	483.304239	1446.89089	-0.39518	-0.00019099	-0.13538	-6.543E-05	-0.53056	-0.00025642	483.30407453651185	148.97	2.6296	148.99	147.38	150.01	0.018707					405	125	5	0	0	0	0.72747	4	57459	57459;57639;57834;58022		0	0	1	2527300			31554	11801	22814	22981	30791;30792;30793;30794	30791					0.18531671190089583
LLHSIVSQL	9	Unmodified	_LLHSIVSQL_					0	0	0			REV__nc|ENSG00000114520|O95219-2|SNX4	REV__nc|ENSG00000114520|O95219-2|SNX4	MULTI-SECPEP	A375_MHC_IP_R2	2	505.6622314453125	2	505.305667	1008.59678	-0.72379	-0.00036573	-0.35423	-0.00017899	-1.078	-0.00054473	505.30542034968124	74.264	0.50741	75.002	74.706	75.214	0.73752					11	9	2	0	0	0	0.71541	1	28130	28130		7.2892	0	1	1165700	+		31555	17828	22815	22982	30795	30795					0.09282619856992369
LLHSSPQILT	10	Unmodified	_LLHSSPQILT_					0	0	0			REV__ENST00000472045.1_1_5:131819645-131819816:-|nuORF	REV__ENST00000472045.1_1_5:131819645-131819816:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	555.2216796875	2	554.821681	1107.62881	-1.1129	-0.00061749	0.47913	0.00026583	-0.63381	-0.00035165	554.821920196342	60.031	0.55832	60.778	60.553	61.111	0.74714					22	10	3	0	0	0	0.60238	1	22707	22707		39.95	1.7741	1	6735300	+		31556	25128	22816	22983	30796	30796					0.07929987540137517
LLHSSPWL	8	Unmodified	_LLHSSPWL_					0	0	0		ENST00000497571.5_1_10:3818483-3818723:-|nuORF	ENST00000497571.5_1_10:3818483-3818723:-|nuORF	ENST00000497571.5_1_10:3818483-3818723:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	477.1944885253906	2	476.766178	951.517802	-0.44489	-0.00021211	-0.37178	-0.00017725	-0.81667	-0.00038936	476.76601202415384	96.69	1.5207	96.69	96.12	97.641	0					38	29	2	0	0	0	0.85124	1	35716	35716		13.508	0	1	4017500			31557	12746	22817	22984	30797	30797					0.04010392622706149
LLHTLEREGAL	11	Unmodified	_LLHTLEREGAL_					0	0	0			REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF	REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	418.3070068359375	3	417.906705	1250.69829	-0.020865	-8.7197E-06	0.58405	0.00024408	0.56319	0.00023536	417.9070859653749	27.598	0.40415	28.276	28.098	28.502	0.67857					15	7	3	0	0	0	0.72801	1	9486	9486		5.8681	0.34485	1	5516100	+		31558	25355	22818	22985	30798	30798					0.0829644648890735
LLHVFSHV	8	Unmodified	_LLHVFSHV_					0	0	0			REV__ENST00000538906.5_2_16:31084239-31084572:-|nuORF	REV__ENST00000538906.5_2_16:31084239-31084572:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	476.6315002441406	2	476.27417	950.533787	-0.83695	-0.00039862	1.0857	0.00051711	0.2488	0.0001185	476.27411976292973	57.682	0.75999	58.431	58.019	58.779	0.74895					16	14	2	0	0	0	0.97144	1	21696	21696		5.2307	0	1	1272800	+		31559	25937	22819	22986	30799	30799					0.056540988596111674
LLHVRILILF	10	Unmodified	_LLHVRILILF_					0	0	0			REV__ENST00000477077.1_1_3:93781852-93782666:+|nuORF	REV__ENST00000477077.1_1_3:93781852-93782666:+|nuORF	MSMS	A375_MHC_IP_R2	2	619.0382690429688	2	618.913176	1235.8118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.92	1	105.69	105.19	106.19	0.76308								0	0	0	0.15628	1	39692	39692		0.45834	0	1		+		31560	23527	22820	22987	30800	30800					0.20332586392601115
LLIDDKGTIKL	11	Unmodified	_LLIDDKGTIKL_					0	0	0		ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	A375_MHC_IP_R1	1	410.6551818847656	3	410.255223	1227.74384	0.075234	3.0865E-05	-0.4818	-0.00019766	-0.40657	-0.0001668	410.2549468342515	72.855	0.50758	72.855	72.676	73.184	0					13	9	2	0	0	0	0.64767	1	26549	26549		19.615	8.55	1	1383100			31561	7492	22821	22988	30801	30801					0.13907671951278644
LLIDDKGTIKL	11	Unmodified	_LLIDDKGTIKL_					0	0	0		ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	A375_MHC_IP_R1	1	410.6549377441406	3	410.255223	1227.74384	-0.079524	-3.2625E-05	-0.1716	-7.0401E-05	-0.25113	-0.00010303	410.2551069855132	76.75	0.50998	76.75	76.522	77.032	0					22	9	3	0	0	0	0.36714	1	27986	27986		41.567	16.412	1	4686800			31562	7492	22821	22988	30802	30802					0.13907671951278644
LLIDDKGTIKL	11	Unmodified	_LLIDDKGTIKL_					0	0	0		ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	A375_MHC_IP_R2	2	410.6548156738281	3	410.255223	1227.74384	-0.23132	-9.4902E-05	-0.75953	-0.0003116	-0.99085	-0.0004065	410.2548315563252	71.987	0.45538	72.721	72.516	72.971	0.73421					17	8	3	0	0	0	0.52331	1	27357	27357		29.291	10.147	1	1951800			31563	7492	22821	22988	30803	30803					0.13907671951278644
LLIDDKGTIKL	11	Unmodified	_LLIDDKGTIKL_					0	0	0		ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	A375_MHC_IP_R2	2	410.6551208496094	3	410.255223	1227.74384	0.02722	1.1167E-05	-0.13456	-5.5205E-05	-0.10734	-4.4038E-05	410.25509326015856	75.899	0.60811	76.639	76.385	76.994	0.74052					24	11	3	0	0	0	0.15163	1	28807	28807		61.165	35.044	1	5256500			31564	7492	22821	22988	30804	30804					0.13907671951278644
LLIENVASL	9	Unmodified	_LLIENVASL_					0	0	0		ENST00000388829.3_1_X:13397321-13397372:-|nuORF;nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1	ENST00000388829.3_1_X:13397321-13397372:-|nuORF	ENST00000388829.3_1_X:13397321-13397372:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	486.69189453125	2	486.292225	970.569897	-0.33308	-0.00016198	-0.1604	-7.8002E-05	-0.49348	-0.00023998	486.2921237253706	83.726	0.70834	83.726	83.483	84.191	0					25	13	2	0	0	0	0.018261	1	30627	30627		85.642	16.537	1	6719800			31565	9734	22822	22989	30805	30805					0.08343511245811897
LLIENVASL	9	Unmodified	_LLIENVASL_					0	0	0		ENST00000388829.3_1_X:13397321-13397372:-|nuORF;nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1	ENST00000388829.3_1_X:13397321-13397372:-|nuORF	ENST00000388829.3_1_X:13397321-13397372:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	486.692626953125	2	486.292225	970.569897	-0.19536	-9.5003E-05	-0.25195	-0.00012252	-0.44732	-0.00021753	486.29204040702615	118.42	2.3335	118.42	117.97	120.3	0					114	45	4	0	0	0	0.0096896	1	43477	43477		110.67	31.078	1	886270000			31566	9734	22822	22989	30806	30806					0.08343511245811897
LLIENVASL	9	Unmodified	_LLIENVASL_					0	0	0		ENST00000388829.3_1_X:13397321-13397372:-|nuORF;nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1	ENST00000388829.3_1_X:13397321-13397372:-|nuORF	ENST00000388829.3_1_X:13397321-13397372:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	971.6373901367188	1	971.577174	970.569897	0.17919	0.0001741	-0.32524	-0.000316	-0.14605	-0.00014189	971.5767721805925	118.44	1.3176	118.44	117.97	119.28	0					49	25	3	0	0	0	0.0095341	1	43811	43811		96.936	17.339	1	648640000			31567	9734	22822	22989	30807	30807					0.08343511245811897
LLIENVASL	9	Unmodified	_LLIENVASL_					0	0	0		ENST00000388829.3_1_X:13397321-13397372:-|nuORF;nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1	ENST00000388829.3_1_X:13397321-13397372:-|nuORF	ENST00000388829.3_1_X:13397321-13397372:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	486.6933288574219	2	486.292225	970.569897	-0.48271	-0.00023474	0.040832	1.9856E-05	-0.44187	-0.00021488	486.2922005810149	117.6	2.0758	118.21	117.73	119.81	0.60909					111	40	5	0	0	0	0.0096896	2	44400	44400;44689		118.89	26.403	1	560630000			31568	9734	22822	22989	30808;30809	30808					0.08343511245811897
LLIENVASL	9	Unmodified	_LLIENVASL_					0	0	0		ENST00000388829.3_1_X:13397321-13397372:-|nuORF;nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1	ENST00000388829.3_1_X:13397321-13397372:-|nuORF	ENST00000388829.3_1_X:13397321-13397372:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	486.6915283203125	2	486.292225	970.569897	-0.60686	-0.00029511	-0.19048	-9.2627E-05	-0.79733	-0.00038774	486.292083531785	82.779	0.80673	83.522	83.195	84.001	0.74293					25	15	2	0	0	0	0.05217	1	31429	31429		89.401	10.673	1	5475000			31569	9734	22822	22989	30810	30810					0.08343511245811897
LLIENVASL	9	Unmodified	_LLIENVASL_					0	0	0		ENST00000388829.3_1_X:13397321-13397372:-|nuORF;nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1	ENST00000388829.3_1_X:13397321-13397372:-|nuORF	ENST00000388829.3_1_X:13397321-13397372:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	971.214599609375	1	971.577174	970.569897	0.069348	6.7377E-05	0.090155	8.7592E-05	0.1595	0.00015497	971.5773271115654	117.61	1.8203	118.22	117.79	119.61	0.60909					74	35	4	0	0	0	0.010853	1	44425	44425		128.93	39.532	1	404720000			31570	9734	22822	22989	30811	30811					0.08343511245811897
LLIESGKSSR	10	Unmodified	_LLIESGKSSR_					0	0	0			REV__nc|ENSG00000290203|Q96PH1-5|NOX5	REV__nc|ENSG00000290203|Q96PH1-5|NOX5	MSMS	A375_MHC_IP_R2	2	545.220703125	2	545.316763	1088.61897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.37	1	121.81	121.31	122.31	0.44488								0	0	0	0.15353	1	46414	46414		9.3831	1.473	1		+		31571	15712	22823	22990	30812	30812					0.07820799534783873
LLIFEGLQY	9	Unmodified	_LLIFEGLQY_					0	0	0			REV__TGM5|p.K709Rfs*8|1|0.46|ENSG00000104055|chr15:43233228-43233228|T/-|frameshift_variant	REV__TGM5|p.K709Rfs*8|1|0.46|ENSG00000104055|chr15:43233228-43233228|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	548.2028198242188	2	548.307875	1094.6012	-0.73263	-0.00040171	0.25272	0.00013857	-0.47991	-0.00026314	548.810794077757	84.635	1.2699	84.635	83.736	85.005	0					50	24	3	0	0	0	0.69504	1	31004	31004		18.135	0	1	1897800	+		31572	17299	22824	22991	30813	30813					0.05768084279907271
LLIFPLPFL	9	Unmodified	_LLIFPLPFL_					0	0	0		OR51G1|p.L159F|1|0.28|ENSG00000278870|chr11:4923865-4923865|G/A|missense_variant	OR51G1|p.L159F|1|0.28|ENSG00000278870|chr11:4923865-4923865|G/A|missense_variant	OR51G1|p.L159F|1|0.28|ENSG00000278870|chr11:4923865-4923865|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	536.741943359375	2	536.843897	1071.67324	-0.34258	-0.00018391	-0.5011	-0.00026901	-0.84368	-0.00045292	536.8436441247829	22.242	0.30625	22.242	22.113	22.419	0					9	5	2	0	0	0	0.71416	1	5951	5951		9.3474	9.3474	1	5299900			31573	15083	22825	22992	30814	30814					0.14027043424266594
LLIFVLLHI	9	Unmodified	_LLIFVLLHI_					0	0	0		ENST00000361283.2_1_13:115080025-115086620:+|nuORF	ENST00000361283.2_1_13:115080025-115086620:+|nuORF	ENST00000361283.2_1_13:115080025-115086620:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1079.7965087890625	1	1080.71796	1079.71069	0.52926	0.00057199	2.127	0.0022987	2.6563	0.0028707	1080.7198985769264	115.09	0.8603	115.09	114.67	115.53	0					19	16	2	0	0	0	0.77154	1	42091	42091		0.6015	0	1	7124000			31574	11041	22826	22993	30815	30815					0.17402134689905324
LLIFYQQL	8	Unmodified	_LLIFYQQL_					0	0	0			REV__ENST00000567011.1_1_16:57179810-57181567:+|nuORF	REV__ENST00000567011.1_1_16:57179810-57181567:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1687622070312	2	519.305136	1036.59572	-0.54024	-0.00028055	1.8726	0.00097247	1.3324	0.00069193	519.3061525280572	77.329	0.55588	77.329	77.032	77.588	0					12	10	2	0	0	0	0.90224	1	28146	28146		13.508	4.1604	1	970720	+		31575	26245	22827	22994	30816	30816					0.07888405488097305
LLIFYQQL	8	Unmodified	_LLIFYQQL_					0	0	0			REV__ENST00000567011.1_1_16:57179810-57181567:+|nuORF	REV__ENST00000567011.1_1_16:57179810-57181567:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1685180664062	2	519.305136	1036.59572	-0.67428	-0.00035016	1.1765	0.00061096	0.5022	0.0002608	519.3053011957139	76.3	0.81213	77.041	76.792	77.604	0.74052					21	15	2	0	0	0	0.78043	1	28982	28982		32.117	8.9685	1	1019400	+		31576	26245	22827	22994	30817	30817					0.07888405488097305
LLIHCCIGEAW	11	Unmodified	_LLIHCCIGEAW_					0	0	0		ENST00000470178.6_2_2:201997617-201997731:+|nuORF	ENST00000470178.6_2_2:201997617-201997731:+|nuORF	ENST00000470178.6_2_2:201997617-201997731:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	629.7110595703125	2	629.309569	1256.60458	-0.77253	-0.00048616	1.4819	0.00093261	0.70942	0.00044645	629.3119909282111	65.925	1.2213	65.925	65.411	66.632	0					40	23	2	0	0	0	0.72119	1	23913	23913		13.906	1.6654	1	1726600			31577	12332	22828	22995	30818	30818					-0.013453122093778802
LLIHCCIGEAW	11	Unmodified	_LLIHCCIGEAW_					0	0	0		ENST00000470178.6_2_2:201997617-201997731:+|nuORF	ENST00000470178.6_2_2:201997617-201997731:+|nuORF	ENST00000470178.6_2_2:201997617-201997731:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	629.309569	1256.60458	-0.91908	-0.00057839	1.1596	0.00072973	0.24048	0.00015134	629.311421897394	65.346	0.91312	66.084	65.562	66.475	0.73812	0.079424	-0.00022347	NaN	13.906	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1445200			31578	12332	22828	22995							-0.013453122093778802
LLIHNEPAD	9	Unmodified	_LLIHNEPAD_					0	0	0		ENST00000532085.1_1_11:118897545-118898521:-|nuORF;ENST00000524428.5_1_11:118896689-118898521:-|nuORF;ENST00000525372.5_1_11:118896689-118898521:-|nuORF;ENST00000525102.5_1_11:118895622-118898521:-|nuORF;ENST00000525039.5_1_11:118895622-118898521:-|nuORF;nc|ENSG00000137700|O43826|SLC37A4;ENSG00000137700|ENST00000330775|SLC37A4;nc|ENSG00000137700|O43826-2|SLC37A4	ENST00000532085.1_1_11:118897545-118898521:-|nuORF	ENST00000532085.1_1_11:118897545-118898521:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	511.9881286621094	2	511.269281	1020.52401	-0.77657	-0.00039704	-4.4348	-0.0022674	-5.2114	-0.0026644	511.26557350491595	32.34	0.61238	33.077	32.704	33.317	0.73691					17	11	2	0	0	0	0.46045	1	11520	11520		29.082	2.1979	1	2453400			31579	4905	22829	22996	30819	30819					0.014568660635632114
LLIIIYCYIFI	11	Unmodified	_LLIIIYCYIFI_					0	0	0		ENSG00000122375|ENST00000241891|OPN4;nc|ENSG00000122375|Q9UHM6-2|OPN4	ENSG00000122375|ENST00000241891|OPN4	ENSG00000122375|ENST00000241891|OPN4	MULTI-MSMS	A375_MHC_IP_R2	2	463.3412780761719	3	462.941699	1385.80327	-0.85549	-0.00039604	-0.45763	-0.00021186	-1.3131	-0.0006079	462.9415283765924	58.49	0.35693	59.239	59.032	59.389	0.74894					11	6	2	0	0	0	0.72798	1	22169	22169		5.4027	0.99656	1	1632700			31580	3775	22830	22997	30820	30820					0.1257985164108959
LLIIKKKAK	9	Unmodified	_LLIIKKKAK_					0	0	0		ENSG00000183354|ENST00000399933|KIAA2026	ENSG00000183354|ENST00000399933|KIAA2026	ENSG00000183354|ENST00000399933|KIAA2026	MSMS	A375_MHC_IP_R2	2	527.8638305664062	2	527.88917	1053.76379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.951	1	85.687	85.187	86.187	0.73601								0	0	0	0.15486	1	32295	32295		2.3027	0	1				31581	8488	22831	22998	30821	30821					0.23905512472538248
LLIILYVKL	9	Unmodified	_LLIILYVKL_					0	0	0		ENSG00000206531|ENST00000488794|CD200R1L;nc|ENSG00000206531|Q6Q8B3|CD200R1L	ENSG00000206531|ENST00000488794|CD200R1L	ENSG00000206531|ENST00000488794|CD200R1L	MSMS	A375_MHC_IP_R2	2	363.2813415527344	3	363.254494	1086.74165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.702	1	27.362	26.862	27.862	0.65992								0	0	0	0.15486	1	9050	9050		2.7352	0.23671	1				31582	9541	22832	22999	30822	30822					0.20175288004134018
LLIKDVPAT	9	Unmodified	_LLIKDVPAT_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.S3306Afs*6|1|0.29|ENSG00000086758|chrX:53549078-53549079|-/ACGC|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	A375_MHC_IP_R1	1	485.70233154296875	2	485.302593	968.590633	-0.18108	-8.7881E-05	0.29427	0.00014281	0.11318	5.4928E-05	485.30259671247387	56.9	0.45897	56.9	56.65	57.109	0					18	8	3	0	0	0	0.030891	1	20406	20406		74.2	28.179	1	1971200			31583	1846	22833	23000	30823	30823					0.10508101625475774
LLIKDVPAT	9	Unmodified	_LLIKDVPAT_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.S3306Afs*6|1|0.29|ENSG00000086758|chrX:53549078-53549079|-/ACGC|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	A375_MHC_IP_R2	2	485.7016296386719	2	485.302593	968.590633	-0.80528	-0.0003908	0.10232	4.9654E-05	-0.70296	-0.00034115	485.3024460910117	56.025	0.46036	56.775	56.54	57	0.75014					17	8	3	0	0	0	0.033808	1	21180	21180		71.708	33.532	1	2321100			31584	1846	22833	23000	30824	30824					0.10508101625475774
LLIKKLPPVLA	11	Unmodified	_LLIKKLPPVLA_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MSMS	A375_MHC_IP_R2	2	402.30316162109375	3	402.284565	1203.83187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.4	1	134.54	134.04	135.04	0.13901								0	0	0	0.16358	1	52871	52871		0.094841	0	1				31585	3905	22834	23001	30825	30825					0.23810337332565723
LLIKRVCL	8	Unmodified	_LLIKRVCL_					0	0	0		ENST00000480058.5_1_6:4032004-4032058:+|nuORF	ENST00000480058.5_1_6:4032004-4032058:+|nuORF	ENST00000480058.5_1_6:4032004-4032058:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	479.6896667480469	2	479.317523	956.620493	-0.43818	-0.00021003	0.84638	0.00040568	0.40819	0.00019565	479.3177716138843	74.748	0.35477	74.748	74.604	74.958	0					8	6	2	0	0	0	0.94479	1	27301	27301		19.439	3.6708	1	422710			31586	12489	22835	23002	30826	30826					0.14044762089827145
LLILFIFVY	9	Unmodified	_LLILFIFVY_					0	0	0		ENST00000478436.1_1_3:145795570-145803239:-|nuORF	ENST00000478436.1_1_3:145795570-145803239:-|nuORF	ENST00000478436.1_1_3:145795570-145803239:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	571.2581787109375	2	570.857004	1139.69945	-0.25018	-0.00014282	2.9882	0.0017058	2.738	0.001563	570.8587136218404	126.26	0.35403	126.56	126.38	126.73	0.2951					9	6	2	0	0	0	0.79837	1	49414	49414		2.3027	0	1	6835700			31587	12462	22836	23003	30827	30827					0.13519312595758493
LLILHMFL	8	Unmodified	_LLILHMFL_					0	0	0			REV__ENSG00000182489|ENST00000372956|XKRX	REV__ENSG00000182489|ENST00000372956|XKRX	MULTI-SECPEP	A375_MHC_IP_R2	2	500.4747009277344	2	500.306624	998.598695	-0.6102	-0.00030529	1.3972	0.00069901	0.78696	0.00039372	500.3073086767735	74.415	0.40704	75.152	74.958	75.365	0.73752					12	7	2	0	0	0	0.90851	1	28207	28207		24.21	7.1234	1	822540	+		31588	21695	22837	23004	30828	30828					0.09933957341263522
LLILHMFL	8	Unmodified	_LLILHMFL_					0	0	0			REV__ENSG00000182489|ENST00000372956|XKRX	REV__ENSG00000182489|ENST00000372956|XKRX	MULTI-MATCH	A375_MHC_IP_R1	1		2	500.306624	998.598695	-0.37852	-0.00018938	-0.10451	-5.2287E-05	-0.48303	-0.00024166	500.3066713190303	75.402	0.55226	75.402	75.211	75.764	0	0.1252	-0.0010692	NaN	24.21	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	693320	+		31589	21695	22837	23004							0.09933957341263522
LLILILKLF	9	Unmodified	_LLILILKLF_					0	0	0		nc|ENSG00000205583|P0CL83|STAG3L1;ENST00000569650.1_1_7:72469123-72470067:-|nuORF;ENST00000359898.5_7:74299379-74304447:-|nuORF	nc|ENSG00000205583|P0CL83|STAG3L1	nc|ENSG00000205583|P0CL83|STAG3L1	MULTI-MSMS	A375_MHC_IP_R1	1	543.880615234375	2	543.388471	1084.76239	-0.47945	-0.00026053	-3.538	-0.0019225	-4.0175	-0.002183	543.3862275790656	89.061	0.25204	89.061	88.919	89.171	0					8	4	3	0	0	0	0.77154	1	32750	32750		0.6015	0	1	1308000			31590	14866	22838	23005	30829	30829					0.2233987838376379
LLILLKYWWR	10	Unmodified	_LLILLKYWWR_					0	0	0		LEMD2|p.R400W|1|0.26|ENSG00000161904|chr6:33777198-33777198|G/A|missense_variant	LEMD2|p.R400W|1|0.26|ENSG00000161904|chr6:33777198-33777198|G/A|missense_variant	LEMD2|p.R400W|1|0.26|ENSG00000161904|chr6:33777198-33777198|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	702.3299560546875	2	702.431733	1402.84891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.23	1	144.25	143.75	144.75	0.024414								0	0	0	0.15628	1	56343	56343		0.45834	0.057624	1				31591	14291	22839	23006	30830	30830					0.1636025793832232
LLILSKKKL	9	Unmodified	_LLILSKKKL_					0	0	0			REV__ENST00000266126.9_1_14:75475951-75476050:+|nuORF	REV__ENST00000266126.9_1_14:75475951-75476050:+|nuORF	MSMS	A375_MHC_IP_R1	1	528.4609985351562	2	528.381177	1054.7478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.384	1	79.384	78.884	79.884	0								0	0	0	0.15486	1	28977	28977		2.3027	0	1		+		31592	23258	22840	23007	30831	30831					0.22261806235655968
LLILVLLLLRV	11	Unmodified	_LLILVLLLLRV_					0	0	0			REV__ENSG00000129538|ENST00000397967|RNASE1	REV__ENSG00000129538|ENST00000397967|RNASE1	MSMS	A375_MHC_IP_R1	1	639.6822509765625	2	639.467784	1276.92102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.157	1	99.157	98.657	99.657	0								0	0	0	0.16353	1	36426	36426		0.35063	0	1		+		31593	18497	22841	23008	30832	30832					0.29363172292073614
LLIMFIIF	8	Unmodified	_LLIMFIIF_					0	0	0			REV__nc|ENSG00000196876|Q9UQD0-4|SCN8A;REV__ENSG00000185313|ENST00000449082|SCN10A	REV__nc|ENSG00000196876|Q9UQD0-4|SCN8A	MSMS	A375_MHC_IP_R2	2	505.4053649902344	2	505.311375	1008.6082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.991	1	82.734	82.234	83.234	0.74293								0	0	0	0.16876	1	31145	31145		6.3541	0	1		+		31594	22235;21888	22842	23009	30833	30833					0.10423725626787927
LLIMPRKW	8	Unmodified	_LLIMPRKW_					0	0	0			REV__ENSG00000135063|ENST00000303068|ENTREP1	REV__ENSG00000135063|ENST00000303068|ENTREP1	MULTI-SECPEP	A375_MHC_IP_R1	1	528.6610717773438	2	528.822973	1055.63139	-0.53707	-0.00028402	1.4682	0.0007764	0.9311	0.00049239	528.8237192468143	75.311	0.30173	75.311	75.06	75.362	0					6	5	2	0	0	0	0.94479	1	27452	27452		13.508	0	1	486200	+		31595	18820	22843	23010	30834	30834					0.10580164464113295
LLIQIWTI	8	Unmodified	_LLIQIWTI_					0	0	0		ENST00000517845.5_2_8:126091002-126094647:-|nuORF	ENST00000517845.5_2_8:126091002-126094647:-|nuORF	ENST00000517845.5_2_8:126091002-126094647:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	500.7153015136719	2	500.315503	998.616454	-0.62779	-0.00031409	0.39426	0.00019725	-0.23354	-0.00011684	500.3155199662944	132.7	0.20412	132.7	132.59	132.79	0					8	3	3	0	0	0	0.97144	1	51182	51182		2.3027	0	1	3979100			31596	12965	22844	23011	30835	30835					0.11708995867752492
LLIQRWFIRKW	11	Unmodified	_LLIQRWFIRKW_					0	0	0			REV__ENSG00000184389|ENST00000442999|A3GALT2	REV__ENSG00000184389|ENST00000442999|A3GALT2	MULTI-MSMS	A375_MHC_IP_R1	1	520.7236938476562	3	520.317151	1557.92962	-0.86674	-0.00045098	-1.8367	-0.00095564	-2.7034	-0.0014066	520.6508198813267	142.46	1.417	142.46	141.47	142.89	0					35	27	2	0	0	0	0.73779	1	54461	54461		0.50596	0	1	3710300	+		31597	21817	22845	23012	30836	30836					0.17297538981256366
LLIRNPCRK	9	Unmodified	_LLIRNPCRK_					0	0	0		ENSG00000117594|ENST00000367027|HSD11B1	ENSG00000117594|ENST00000367027|HSD11B1	ENSG00000117594|ENST00000367027|HSD11B1	MSMS	A375_MHC_IP_R1	1	371.62744140625	3	371.562216	1111.66482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.282	1	63.282	62.782	63.782	0								0	0	0	0.15486	1	22870	22870		1.1933	0	1				31598	3497	22846	23013	30837	30837					0.1134516623599211
LLIWKLLMIIH	11	Unmodified	_LLIWKLLMIIH_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MSMS	A375_MHC_IP_R2	2	697.3433837890625	2	696.943619	1391.87268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.71	1	123.08	122.58	123.58	0.3766								0	0	0	0.16331	1	47076	47076		1.4819	0.15237	1				31599	5837	22847	23014	30838	30838					0.1924235538051562
LLIWLVWIVPF	11	Unmodified	_LLIWLVWIVPF_					0	0	0			REV__ENST00000274979.12_2_2:242163924-242164206:+|nuORF	REV__ENST00000274979.12_2_2:242163924-242164206:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	699.9946899414062	2	699.931035	1397.84752	-0.96522	-0.00067559	-0.1167	-8.1682E-05	-1.0819	-0.00075727	699.9307612240314	149.16	2.45	149.16	147.55	150	0					281	94	5	0	0	0	0.73934	1	57167	57167		0	0	1	2976900	+		31600	23295	22848	23015	30839	30839					0.16450623849573276
LLIYIVYFYYK	11	Unmodified	_LLIYIVYFYYK_					0	0	0			REV__ENST00000428457.1_1_7:47316856-47317057:-|nuORF	REV__ENST00000428457.1_1_7:47316856-47317057:-|nuORF	MSMS	A375_MHC_IP_R2	2	749.774169921875	2	749.423239	1496.83193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.91	1	113.64	113.14	114.14	0.72458								0	0	0	0.16297	1	42569	42569		3.2813	0.28607	1		+		31601	24677	22849	23016	30840	30840					0.10338292541882765
LLIYRYSR	8	Unmodified	_LLIYRYSR_					0	0	0			REV__SYNJ2|p.H619Y|1|0.49|ENSG00000078269|chr6:158069588-158069588|C/T|missense_variant	REV__SYNJ2|p.H619Y|1|0.49|ENSG00000078269|chr6:158069588-158069588|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	362.28167724609375	3	361.881831	1082.62366	0.15307	5.5392E-05	-0.27163	-9.8297E-05	-0.11856	-4.2906E-05	361.8816504790799	28.381	0.85805	28.381	27.887	28.745	0					32	16	4	0	0	0	0.71817	1	8744	8744		29.082	29.082	1	10543000	+		31602	28074	22850	23017	30841	30841					0.08565728468170164
LLKAHLYQI	9	Unmodified	_LLKAHLYQI_					0	0	0			REV__ENSG00000164935|ENST00000297581|DCSTAMP	REV__ENSG00000164935|ENST00000297581|DCSTAMP	MULTI-SECPEP	A375_MHC_IP_R2	2	366.6383056640625	3	366.893848	1097.65972	0.24939	9.1501E-05	-0.54221	-0.00019893	-0.29282	-0.00010743	367.2279594734883	47.928	0.40255	48.689	48.48	48.883	0.76128					14	7	3	0	0	0	0.75466	1	18043	18043		2.4985	0	1	2221100	+		31603	20530	22851	23018	30842	30842					0.11479185645021062
LLKALNGP	8	Unmodified	_LLKALNGP_					0	0	0		ENST00000577760.1_1_17:37009181-37009274:-|nuORF	ENST00000577760.1_1_17:37009181-37009274:-|nuORF	ENST00000577760.1_1_17:37009181-37009274:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	413.31103515625	2	413.263271	824.511988	-0.00096491	-3.9876E-07	0.23316	9.6356E-05	0.23219	9.5957E-05	413.263304113812	28.985	0.4046	28.985	28.745	29.149	0					12	7	2	0	0	0	0.77702	1	9060	9060		5.7604	0	1	2003600			31604	13650	22852	23019	30843	30843					0.09271294111044881
LLKDQLSPVL	10	Unmodified	_LLKDQLSPVL_					0	0	0		FAM20A|p.E483K|1|0.45|ENSG00000108950|chr17:68537656-68537656|C/T|missense_variant	FAM20A|p.E483K|1|0.45|ENSG00000108950|chr17:68537656-68537656|C/T|missense_variant	FAM20A|p.E483K|1|0.45|ENSG00000108950|chr17:68537656-68537656|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	563.746826171875	2	563.347532	1124.68051	-0.38672	-0.00021786	0.24089	0.00013571	-0.14582	-8.2149E-05	563.3475869011919	102.7	0.60854	102.7	102.4	103.01	0					24	11	3	0	0	0	0.56504	1	37726	37726		34.402	12.865	1	3878300			31605	13970	22853	23020	30844	30844					0.12315731234025407
LLKDQLSPVL	10	Unmodified	_LLKDQLSPVL_					0	0	0		FAM20A|p.E483K|1|0.45|ENSG00000108950|chr17:68537656-68537656|C/T|missense_variant	FAM20A|p.E483K|1|0.45|ENSG00000108950|chr17:68537656-68537656|C/T|missense_variant	FAM20A|p.E483K|1|0.45|ENSG00000108950|chr17:68537656-68537656|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	563.7002563476562	2	563.347532	1124.68051	-0.46464	-0.00026175	0.10814	6.092E-05	-0.3565	-0.00020083	563.3476949456036	101.74	0.55975	102.51	102.26	102.82	0.76428					21	10	3	0	0	0	0.6774	1	38557	38557		21.537	5.3879	1	3627700			31606	13970	22853	23020	30845	30845					0.12315731234025407
LLKDSIVQL	9	Unmodified	_LLKDSIVQL_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENST00000592194.1_1_17:66508623-66511738:+|nuORF;PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant;PRKAR1A|p.A48Dfs*82|1|0.42|ENSG00000108946|chr17:68515541-68515542|-/AT|frameshift_variant	nc|ENSG00000108946|P10644-2|PRKAR1A;PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-SECPEP	A375_MHC_IP_R1	1	515.220947265625	2	514.82115	1027.62775	-0.68701	-0.00035369	0.053558	2.7573E-05	-0.63345	-0.00032611	514.8211492541171	80.617	0.60822	80.617	80.289	80.897	0					26	11	3	0	0	0	0.061442	1	29414	29414		72.968	3.863	1	9987400			31607	2847;15226	22854	23021	30846	30846					0.1150377317121638
LLKDSIVQL	9	Unmodified	_LLKDSIVQL_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENST00000592194.1_1_17:66508623-66511738:+|nuORF;PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant;PRKAR1A|p.A48Dfs*82|1|0.42|ENSG00000108946|chr17:68515541-68515542|-/AT|frameshift_variant	nc|ENSG00000108946|P10644-2|PRKAR1A;PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-SECPEP	A375_MHC_IP_R2	2	515.1920166015625	2	514.82115	1027.62775	-0.69076	-0.00035562	-0.39931	-0.00020558	-1.0901	-0.00056119	514.8209238945641	79.69	0.7112	80.435	80.199	80.91	0.74474					25	13	3	0	0	0	0.042716	1	30225	30225		96.367	7.4127	1	6995600			31608	2847;15226	22854	23021	30847	30847					0.1150377317121638
LLKDYEQKI	9	Unmodified	_LLKDYEQKI_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	A375_MHC_IP_R2	2	384.2864990234375	3	383.888651	1148.64412	-0.25931	-9.9545E-05	-0.80857	-0.0003104	-1.0679	-0.00040995	383.8882291226956	36.254	1.5737	37.025	35.836	37.41	0.7709					65	30	3	0	0	0	0.44183	1	12943	12943		22.658	0	1	38538000			31609	1262	22855	23022	30848	30848					0.07574854337326542
LLKEGNRIL	9	Unmodified	_LLKEGNRIL_					0	0	0			REV__tr|U7STM7|U7STM7_FUSNUSecretedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01118PE=4SV=1	REV__tr|U7STM7|U7STM7_FUSNUSecretedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01118PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	528.7318725585938	2	528.332216	1054.64988	-0.28194	-0.00014896	-0.2535	-0.00013393	-0.53544	-0.00028289	528.3320247898697	70.155	0.50944	70.155	69.882	70.392	0					21	9	3	0	0	0	0.3213	1	25455	25455		37.974	0	1	2913200	+		31610	28499	22856	23023	30849	30849					0.12473997639654044
LLKEGNRIL	9	Unmodified	_LLKEGNRIL_					0	0	0			REV__tr|U7STM7|U7STM7_FUSNUSecretedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01118PE=4SV=1	REV__tr|U7STM7|U7STM7_FUSNUSecretedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01118PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	528.7317504882812	2	528.332216	1054.64988	-0.42659	-0.00022538	-0.44021	-0.00023258	-0.8668	-0.00045796	528.3318715471819	69.208	0.50709	69.943	69.677	70.184	0.73512					21	9	3	0	0	0	0.3213	1	26217	26217		46.021	16.939	1	2799200	+		31611	28499	22856	23023	30850	30850					0.12473997639654044
LLKEHSQL	8	Unmodified	_LLKEHSQL_					0	0	0		ENST00000471809.5_1_22:37154357-37154516:-|nuORF	ENST00000471809.5_1_22:37154357-37154516:-|nuORF	ENST00000471809.5_1_22:37154357-37154516:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	483.6554260253906	2	484.282192	966.549831	-0.10517	-5.0934E-05	-0.20748	-0.00010048	-0.31265	-0.00015141	484.2819812609348	54.188	0.45308	54.188	53.962	54.415	0					12	8	2	0	0	0	0.90775	1	19325	19325		20.454	0	1	2081900			31612	12359	22857	23024	30851	30851					0.06521760305861335
LLKEKASAF	9	Unmodified	_LLKEKASAF_					0	0	0		ENSG00000205683|ENST00000556509|DPF3	ENSG00000205683|ENST00000556509|DPF3	ENSG00000205683|ENST00000556509|DPF3	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1986083984375	2	503.800217	1005.58588	-0.81758	-0.0004119	-0.99789	-0.00050274	-1.8155	-0.00091463	503.7993606318611	97.409	0.40656	98.165	98.025	98.432	0.75587					9	7	2	0	0	0	0.55359	1	37004	37004		21.747	2.4897	1	1110500			31613	9522	22858	23025	30852	30852					0.08331217482702868
LLKEPAGH	8	Unmodified	_LLKEPAGH_					0	0	0			REV__ENSG00000185669|ENST00000332281|SNAI3	REV__ENSG00000185669|ENST00000332281|SNAI3	MULTI-MSMS	A375_MHC_IP_R1	1	864.8938598632812	1	864.493778	863.486502	-0.65242	-0.00056402	0.50079	0.00043293	-0.15164	-0.00013109	864.4940808439417	144.84	1.0317	144.84	144.55	145.58	0					61	52	2	0	0	0	0.77839	1	55685	55685		0.79363	0	1	3131900	+		31614	21911	22859	23026	30853	30853					0.049298195886080975
LLKEPQRII	9	Unmodified	_LLKEPQRII_					0	0	0		tr|U7SIW4|U7SIW4_FUSNUGlutamatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02256PE=3SV=1	tr|U7SIW4|U7SIW4_FUSNUGlutamatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02256PE=3SV=1	tr|U7SIW4|U7SIW4_FUSNUGlutamatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02256PE=3SV=1	MSMS	A375_MHC_IP_R1	1	555.6531982421875	2	555.355691	1108.69683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.746	1	93.746	93.246	94.246	0								0	0	0	0.15486	1	34459	34459		9.3474	0	1				31615	29435	22860	23027	30854	30854					0.14682857190791765
LLKERSHLRQ	10	Unmodified	_LLKERSHLRQ_					0	0	0			REV__ENSG00000256294|ENST00000262894|ZNF225	REV__ENSG00000256294|ENST00000262894|ZNF225	MSMS	A375_MHC_IP_R1	1	640.423583984375	2	640.383303	1278.75205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.581	1	92.581	92.081	93.081	0								0	0	0	0.15451	1	34025	34025		6.7232	2.3939	1		+		31616	22881	22861	23028	30855	30855					0.12382663711264286
LLKETIDSR	9	Unmodified	_LLKETIDSR_					0	0	0		ENSG00000149346|ENST00000334534|SLX4IP	ENSG00000149346|ENST00000334534|SLX4IP	ENSG00000149346|ENST00000334534|SLX4IP	MULTI-MSMS	A375_MHC_IP_R2	2	537.6566772460938	2	537.811313	1073.60807	-0.95664	-0.00051449	3.0984	0.0016663	2.1417	0.0011518	537.813249987525	81.421	0.40188	82.164	81.928	82.33	0.74293					12	7	2	0	0	0	0.58268	1	30834	30834		21.537	3.3906	1	1268600			31617	5802	22862	23029	30856	30856					0.07421397160464949
LLKETNIW	8	Unmodified	_LLKETNIW_					0	0	0		ENSG00000163312|ENST00000295488|HELQ	ENSG00000163312|ENST00000295488|HELQ	ENSG00000163312|ENST00000295488|HELQ	MULTI-SECPEP	A375_MHC_IP_R1	1	508.6744079589844	2	508.792392	1015.57023	-0.4679	-0.00023806	-0.19411	-9.8761E-05	-0.66201	-0.00033682	508.7923572876897	89.736	0.60655	89.736	89.476	90.083	0					20	11	2	0	0	0	0.69059	1	33002	33002		38.151	0	1	2360100			31618	6646	22863	23030	30857	30857					0.06306930965638458
LLKEYLEEI	9	Unmodified	_LLKEYLEEI_					0	0	0		tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1	tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1	tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	575.9072265625	2	575.323722	1148.63289	-0.15154	-8.7184E-05	0.13267	7.6327E-05	-0.018872	-1.0857E-05	575.3238677114167	104.51	0.70949	104.51	104.18	104.89	0					32	13	3	0	0	0	0.1952	1	38427	38427		57.722	0	1	6170000			31619	29443	22864	23031	30858	30858					0.06452032243191752
LLKFRRALFK	10	Unmodified	_LLKFRRALFK_					0	0	0			REV__nc|ENSG00000170004|Q12873-3|CHD3;REV__ENSG00000111642|ENST00000544040|CHD4;REV__ENSG00000116254|ENST00000262450|CHD5	REV__ENSG00000111642|ENST00000544040|CHD4	MSMS	A375_MHC_IP_R2	2	645.96484375	2	646.4217	1290.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.037752	1	0.50819	0.0081938	1.0082	0.47044								0	0	0	0.15642	1	13	13		0	0	1		+		31620	17680;27349;17951	22865	23032	30859	30859					0.19506506998368423
LLKFSHIRT	9	Unmodified	_LLKFSHIRT_					0	0	0		INSR|p.Y504H|1|0.61|ENSG00000171105|chr19:7168068-7168068|A/G|missense_variant	INSR|p.Y504H|1|0.61|ENSG00000171105|chr19:7168068-7168068|A/G|missense_variant	INSR|p.Y504H|1|0.61|ENSG00000171105|chr19:7168068-7168068|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	557.6838989257812	2	557.840208	1113.66586	-0.57225	-0.00031922	0.81568	0.00045502	0.24343	0.0001358	557.8402475763801	46.42	0.25	46.42	46.295	46.545	0					6	4	2	0	0	0	0.775	1	16251	16251		6.7232	0	1	908430			31621	14168	22866	23033	30860	30860					0.11357703876569758
LLKGLSIV	8	Unmodified	_LLKGLSIV_					0	0	0			REV__ENSG00000197653|ENST00000673944|DNAH10	REV__ENSG00000197653|ENST00000673944|DNAH10	MULTI-SECPEP	A375_MHC_IP_R2	2	422.1889953613281	2	421.789121	841.56369	-0.045915	-1.9367E-05	0.091156	3.8449E-05	0.045241	1.9082E-05	421.7890928057724	87.922	0.81107	88.653	88.367	89.178	0.7318					34	15	3	0	0	0	0.86263	1	33431	33431		26.884	0	1	7202500	+		31622	22307	22867	23034	30861	30861					0.1365703780493277
LLKILVNLIGS	11	Unmodified	_LLKILVNLIGS_					0	0	0			REV__HUWE1|p.S3306Afs*6|1|0.29|ENSG00000086758|chrX:53549078-53549079|-/ACGC|frameshift_variant	REV__HUWE1|p.S3306Afs*6|1|0.29|ENSG00000086758|chrX:53549078-53549079|-/ACGC|frameshift_variant	MSMS	A375_MHC_IP_R2	2	394.74676513671875	3	394.932191	1181.77475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.991	1	11.489	10.989	11.989	0.49811								0	0	0	0.16358	1	3410	3410		0.094841	0	1		+		31623	16859	22868	23035	30862	30862					0.19112870056187603
LLKKIIKKYL	10	Unmodified	_LLKKIIKKYL_					0	0	0			REV__ENSG00000163737|ENST00000296029|PF4	REV__ENSG00000163737|ENST00000296029|PF4	MSMS	A375_MHC_IP_R1	1	630.4679565429688	2	630.444309	1258.87407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.13	1	68.13	67.63	68.63	0								0	0	0	0.15628	1	24695	24695		0.45834	0.10771	1		+		31624	20405	22869	23036	30863	30863					0.25498312740955953
LLKKKIYN	8	Unmodified	_LLKKKIYN_					0	0	0		ENST00000451446.1_1_13:24697062-24697869:-|nuORF	ENST00000451446.1_1_13:24697062-24697869:-|nuORF	ENST00000451446.1_1_13:24697062-24697869:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	510.2000427246094	2	510.334227	1018.6539	-0.64979	-0.00033161	0.12543	6.4011E-05	-0.52436	-0.0002676	510.3341155572455	90.134	0.56132	90.866	90.545	91.106	0.7318					16	10	2	0	0	0	0.97144	1	34208	34208		9.3474	0	1	926600			31625	12073	22870	23037	30864	30864					0.14532087133352434
LLKKKKKK	8	Unmodified	_LLKKKKKK_					0	0	0		ENST00000336440.3_1_14:69259862-69260099:-|nuORF;ENST00000485024.1_1_3:184529997-184533630:+|nuORF;ENST00000344293.5_1_10:7866412-8006047:+|nuORF;ENST00000378289.8_1_10:14940166-14940367:-|nuORF	ENST00000336440.3_1_14:69259862-69260099:-|nuORF;ENST00000378289.8_1_10:14940166-14940367:-|nuORF	ENST00000378289.8_1_10:14940166-14940367:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1013.8709106445312	1	1013.75575	1012.74847	0.096801	9.8133E-05	-3.3987	-0.0034454	-3.3019	-0.0033473	1013.7558176846248	119.59	0.3074	119.59	119.33	119.64	0					7	5	2	0	0	0	0.972	1	44097	44097		0	0	1	11369000			31626	10816;11312	22871	23038	30865	30865					0.24260645675360593
LLKKKKKK	8	Unmodified	_LLKKKKKK_					0	0	0		ENST00000336440.3_1_14:69259862-69260099:-|nuORF;ENST00000485024.1_1_3:184529997-184533630:+|nuORF;ENST00000344293.5_1_10:7866412-8006047:+|nuORF;ENST00000378289.8_1_10:14940166-14940367:-|nuORF	ENST00000336440.3_1_14:69259862-69260099:-|nuORF;ENST00000378289.8_1_10:14940166-14940367:-|nuORF	ENST00000378289.8_1_10:14940166-14940367:-|nuORF	MSMS	A375_MHC_IP_R2	2	507.376220703125	2	507.381512	1012.74847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.749	1	82.492	81.992	82.992	0.74293								0	0	0	0.16876	1	31051	31051		2.8892	0	1				31627	10816;11312	22871	23038	30866	30866					0.24260645675360593
LLKKKKKMRY	10	Unmodified	_LLKKKKKMRY_					0	0	0			REV__ENST00000417638.1_1_9:12790708-12814310:-|nuORF	REV__ENST00000417638.1_1_9:12790708-12814310:-|nuORF	MSMS	A375_MHC_IP_R1	1	445.9610595703125	3	445.960087	1334.85843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.513	1	23.513	23.013	24.013	0								0	0	0	0.15637	1	6467	6467		0.15932	0	1		+		31628	24547	22872	23039	30867	30867					0.20439702952239713
LLKKKSSESTT	11	Unmodified	_LLKKKSSESTT_					0	0	0		ENSG00000171487|ENST00000390649|NLRP5	ENSG00000171487|ENST00000390649|NLRP5	ENSG00000171487|ENST00000390649|NLRP5	MULTI-MSMS	A375_MHC_IP_R1	1	612.2778930664062	2	611.356085	1220.69762	-0.68791	-0.00042056	0.15171	9.2749E-05	-0.5362	-0.00032781	611.3560717946076	149	2.2487	149	147.75	150	0					178	75	3	0	0	0	0.73795	1	56821	56821		1.3295	1.3295	1	719560			31629	7606	22873	23040	30868	30868					0.09609607049173974
LLKKNRLAKK	10	Unmodified	_LLKKNRLAKK_					0	0	0			REV__ENSG00000108551|ENST00000225688|RASD1	REV__ENSG00000108551|ENST00000225688|RASD1	MSMS	A375_MHC_IP_R2	2	606.4591674804688	2	606.419157	1210.82376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.585	1	48.347	47.847	48.847	0.76128								0	0	0	0.15585	1	17847	17847		1.8442	0	1		+		31630	17536	22874	23041	30869	30869					0.2267820313577431
LLKKRIRF	8	Unmodified	_LLKKRIRF_					0	0	0		nc|ENSG00000163512|Q9H6S1-3|AZI2;nc|ENSG00000163512|Q9H6S1-5|AZI2;nc|ENSG00000163512|Q9H6S1-4|AZI2;ENST00000463512.5_1_3:28368296-28390095:-|nuORF;ENSG00000163512|ENST00000479665|AZI2	nc|ENSG00000163512|Q9H6S1-3|AZI2	nc|ENSG00000163512|Q9H6S1-3|AZI2	MULTI-SECPEP	A375_MHC_IP_R1	1	536.7054443359375	2	537.368936	1072.72332	-0.63373	-0.00034054	-0.77104	-0.00041433	-1.4048	-0.00075487	537.3671901896191	47.541	0.2015	47.541	47.416	47.618	0					5	3	2	0	0	0	0.972	1	16680	16680		6.3541	0	1	755670			31631	6673	22875	23042	30870	30870					0.18986590872782472
LLKKRPNP	8	Unmodified	_LLKKRPNP_					0	0	0			REV__nc|ENSG00000126261|Q9UBT2-2|UBA2	REV__nc|ENSG00000126261|Q9UBT2-2|UBA2	MULTI-SECPEP	A375_MHC_IP_R1	1	483.71600341796875	2	483.316369	964.618185	-0.67627	-0.00032685	0.0041757	2.0182E-06	-0.6721	-0.00032484	483.31622975738435	147.78	0.32097	147.78	147.68	148	0					40	18	3	0	0	0	0.972	1	56443	56443		0.69038	0	1	341870	+		31632	18385	22876	23043	30871	30871					0.13446049676360872
LLKKRPNP	8	Unmodified	_LLKKRPNP_					0	0	0			REV__nc|ENSG00000126261|Q9UBT2-2|UBA2	REV__nc|ENSG00000126261|Q9UBT2-2|UBA2	MULTI-SECPEP	A375_MHC_IP_R2	2	483.7040100097656	2	483.316369	964.618185	-0.39474	-0.00019078	-0.16567	-8.0069E-05	-0.5604	-0.00027085	483.3161101845433	147.79	0.27371	147.81	147.71	147.98	0.018692					38	17	3	0	0	0	0.972	1	57459	57459		0.69038	0	1	265710	+		31633	18385	22876	23043	30872	30872					0.13446049676360872
LLKLIKIY	8	Unmodified	_LLKLIKIY_					0	0	0		tr|U7STX9|U7STX9_FUSNUProbablenicotinate-nucleotideadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadDPE=3SV=1	tr|U7STX9|U7STX9_FUSNUProbablenicotinate-nucleotideadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadDPE=3SV=1	tr|U7STX9|U7STX9_FUSNUProbablenicotinate-nucleotideadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadDPE=3SV=1	MSMS	A375_MHC_IP_R1	1	502.35797119140625	2	502.349346	1002.68414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.842	1	82.842	82.342	83.342	0								0	0	0	0.16876	1	30300	30300		2.8892	0	1				31634	29723	22877	23044	30873	30873					0.1829044579855008
LLKLILKKHK	10	Unmodified	_LLKLILKKHK_					0	0	0		ENST00000280557.10_1_12:123252139-123253391:+|nuORF	ENST00000280557.10_1_12:123252139-123253391:+|nuORF	ENST00000280557.10_1_12:123252139-123253391:+|nuORF	MSMS	A375_MHC_IP_R2	2	617.6781616210938	2	617.442101	1232.86965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.74	1	78.483	77.983	78.983	0.74293								0	0	0	0.15642	1	29520	29520		0	0	1				31635	10418	22878	23045	30874	30874					0.2625284831801764
LLKLKKLLKFK	11	Unmodified	_LLKLKKLLKFK_					0	0	0			REV__tr|U7SQX1|U7SQX1_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01612PE=4SV=1	REV__tr|U7SQX1|U7SQX1_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01612PE=4SV=1	MSMS	A375_MHC_IP_R1	1	686.5669555664062	2	686.494333	1370.97411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.12	1	81.12	80.62	81.62	0								0	0	0	0.1636	1	29641	29641		0	0	1		+		31636	28388	22879	23046	30875	30875					0.3034655007470519
LLKLKPLEMV	10	Unmodified	_LLKLKPLEMV_					0	0	0			REV__MOK|p.S355L|1|0.29|ENSG00000080823|chr14:102229575-102229575|G/A|missense_variant	REV__MOK|p.S355L|1|0.29|ENSG00000080823|chr14:102229575-102229575|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	395.65399169921875	3	395.254277	1182.741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.38	1	101.15	100.65	101.65	0.76278								0	0	0	0.15583	1	38064	38064		1.9064	0	1		+		31637	27030	22880	23047	30876	30876					0.1569412529274814
LLKLPLLQL	9	Unmodified	_LLKLPLLQL_					0	0	0			REV__ENST00000432879.5_1_22:20103490-20103634:+|nuORF	REV__ENST00000432879.5_1_22:20103490-20103634:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	526.2683715820312	2	525.867903	1049.72125	-0.32265	-0.00016967	-0.55257	-0.00029058	-0.87521	-0.00046025	525.867514983876	128.22	0.25432	128.22	128.13	128.38	0					6	4	2	0	0	0	0.030624	1	49239	49239		100.37	10.945	1	9447500	+		31638	24721	22881	23048	30877	30877					0.19838117344329476
LLKNDANF	8	Unmodified	_LLKNDANF_					0	0	0			REV__nc|ENSG00000119969|Q9NRZ9-4|HELLS	REV__nc|ENSG00000119969|Q9NRZ9-4|HELLS	MULTI-MSMS	A375_MHC_IP_R2	2	467.673583984375	2	467.753267	933.491981	-0.92996	-0.00043499	0.11051	5.1691E-05	-0.81945	-0.0003833	467.75321561057496	61.803	0.70432	62.546	62.17	62.874	0.74263					33	13	3	0	0	0	0.68328	1	23413	23413		39.957	5.8549	1	6650700	+		31639	18108	22882	23049	30878	30878					0.022574983804133808
LLKNFCGNCQ	10	Unmodified	_LLKNFCGNCQ_					0	0	0		ENSG00000082293|ENST00000620364|COL19A1	ENSG00000082293|ENST00000620364|COL19A1	ENSG00000082293|ENST00000620364|COL19A1	MULTI-MSMS	A375_MHC_IP_R2	2	571.2368774414062	2	570.270444	1138.52633	-0.208	-0.00011861	-0.8986	-0.00051245	-1.1066	-0.00063106	570.2698096209747	68.848	2.893	69.583	68.51	71.403	0.73512					78	56	3	0	0	0	0.70329	1	26578	26578		10.824	2.0785	1	2473600			31640	1757	22883	23050	30879	30879					-0.03738744794645754
LLKNIGKAAF	10	Unmodified	_LLKNIGKAAF_					0	0	0			REV__ENST00000464816.1_1_3:112729450-112730081:-|nuORF	REV__ENST00000464816.1_1_3:112729450-112730081:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	358.9255676269531	3	358.893848	1073.65972	0.04522	1.6229E-05	0.19031	6.8303E-05	0.23553	8.4532E-05	358.8938120418211	58.983	0.35799	58.983	58.887	59.245	0					10	6	2	0	0	0	0.71881	1	21209	21209		3.8763	0.88109	1	922690	+		31641	20383	22884	23051	30880	30880					0.12583185645030426
LLKNKLHVQ	9	Unmodified	_LLKNKLHVQ_					0	0	0		ENSG00000198924|ENST00000361384|DCLRE1A	ENSG00000198924|ENST00000361384|DCLRE1A	ENSG00000198924|ENST00000361384|DCLRE1A	MULTI-MSMS	A375_MHC_IP_R2	2	364.95355224609375	3	364.901114	1091.68151	-0.024694	-9.0109E-06	0.21519	7.8523E-05	0.1905	6.9513E-05	364.90102813284756	39.698	0.25576	40.472	40.32	40.575	0.77451					6	4	2	0	0	0	0.72761	1	14713	14713		4.5289	0.33936	1	832140			31642	9372	22885	23052	30881	30881					0.13933990393593376
LLKNQSRYE	9	Unmodified	_LLKNQSRYE_					0	0	0		nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	MULTI-SECPEP	A375_MHC_IP_R1	1	575.2371215820312	2	575.814387	1149.61422	-0.2068	-0.00011908	-0.1557	-8.9652E-05	-0.3625	-0.00020873	575.813857416498	60.85	0.81317	60.85	60.363	61.176	0					19	15	2	0	0	0	0.63327	1	21821	21821		24.021	8.7721	1	739080			31643	3438	22886	23053	30882	30882					0.04539915392001603
LLKPHRRKA	9	Unmodified	_LLKPHRRKA_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MSMS	A375_MHC_IP_R2	2	373.480224609375	3	373.580487	1117.71963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.499	1	46.264	45.764	46.764	0.76519								0	0	0	0.15486	1	17011	17011		2.9952	0.26005	1		+		31644	21820	22887	23054	30883	30883					0.16547921098936058
LLKPKKKKVKA	11	Unmodified	_LLKPKKKKVKA_					0	0	0			REV__nc|ENSG00000198363|Q12797-10|ASPH	REV__nc|ENSG00000198363|Q12797-10|ASPH	MSMS	A375_MHC_IP_R2	2	640.9895629882812	2	640.960658	1279.90676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.149	1	71.883	71.383	72.383	0.73421								0	0	0	0.16354	1	26984	26984		0.30703	0.30703	1		+		31645	22365	22888	23055	30884	30884					0.27800519863785667
LLKPLLFEV	9	Unmodified	_LLKPLLFEV_					0	0	0		ENSG00000115183|ENST00000263635|TANC1;nc|ENSG00000115183|Q9C0D5-2|TANC1	ENSG00000115183|ENST00000263635|TANC1	ENSG00000115183|ENST00000263635|TANC1	MSMS	A375_MHC_IP_R2	2	536.7442016601562	2	536.344261	1070.67397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.04	1	127.31	126.81	127.81	0.26593								0	0	0	0.14729	1	49757	49757		34.402	1.616	1				31646	3279	22889	23056	30885	30885					0.14145838073318373
LLKPSTKPR	9	Unmodified	_LLKPSTKPR_					0	0	0		ENSG00000172318|ENST00000392690|B3GALT1	ENSG00000172318|ENST00000392690|B3GALT1	ENSG00000172318|ENST00000392690|B3GALT1	MSMS	A375_MHC_IP_R2	2	520.2785034179688	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.612	1	84.352	83.852	84.852	0.73962								0	0	0	0.15486	1	31779	31779		3.5965	0	1				31647	7699	22890	23057	30886	30886					0.13718301502285613
LLKQFNEEA	9	Unmodified	_LLKQFNEEA_					0	0	0			REV__nc|ENSG00000185745|P09914-2|IFIT1	REV__nc|ENSG00000185745|P09914-2|IFIT1	MULTI-MSMS	A375_MHC_IP_R2	2	546.7256469726562	2	546.290214	1090.56587	-0.82973	-0.00045328	-0.25642	-0.00014008	-1.0862	-0.00059335	546.2903826113775	106.35	0.55962	107.11	106.78	107.34	0.75977					20	10	3	0	0	0	0.63811	1	40133	40133		12.532	0	1	2406400	+		31648	21916	22891	23058	30887	30887					0.02421421752092101
LLKQILLKL	9	Unmodified	_LLKQILLKL_					0	0	0		ENSG00000164296|ENST00000296736|TIGD6	ENSG00000164296|ENST00000296736|TIGD6	ENSG00000164296|ENST00000296736|TIGD6	MULTI-MSMS	A375_MHC_IP_R1	1	541.7047729492188	2	541.389003	1080.76345	-0.59139	-0.00032017	0.49069	0.00026566	-0.1007	-5.4518E-05	541.8911839546971	103.98	0.25343	103.98	103.83	104.08	0					7	4	2	0	0	0	0.58047	1	38152	38152		15.847	3.3156	1	613240			31649	6815	22892	23059	30888	30888					0.22630092752683595
LLKRFFKT	8	Unmodified	_LLKRFFKT_					0	0	0		ENSG00000198723|ENST00000361664|TEX45	ENSG00000198723|ENST00000361664|TEX45	ENSG00000198723|ENST00000361664|TEX45	MSMS	A375_MHC_IP_R2	2	527.0050048828125	2	526.834394	1051.65424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.7	1	105.46	104.96	105.96	0.76308								0	0	0	0.16876	1	39608	39608		14.582	0	1				31650	9309	22893	23060	30889	30889					0.1304750685324052
LLKRIKCFL	9	Unmodified	_LLKRIKCFL_					0	0	0		CFLAR|p.I71_L72insKCF|1|0.05|ENSG00000003402|chr2:201130076-201130077|-/TCAAGTGCT|inframe_insertion	CFLAR|p.I71_L72insKCF|1|0.05|ENSG00000003402|chr2:201130076-201130077|-/TCAAGTGCT|inframe_insertion	CFLAR|p.I71_L72insKCF|1|0.05|ENSG00000003402|chr2:201130076-201130077|-/TCAAGTGCT|inframe_insertion	MSMS	A375_MHC_IP_R1	1	567.1635131835938	2	567.365004	1132.71546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.542	1	69.542	69.042	70.042	0								0	0	0	0.15486	1	25238	25238		9.3474	1.4373	1				31651	381	22894	23061	30890	30890					0.15440695561005668
LLKRMIDPV	9	Unmodified	_LLKRMIDPV_					0	0	0		ENST00000525579.5_1_9:102691086-102716280:+|nuORF;ENSG00000136874|ENST00000259400|STX17	ENST00000525579.5_1_9:102691086-102716280:+|nuORF	ENST00000525579.5_1_9:102691086-102716280:+|nuORF	MSMS	A375_MHC_IP_R2	2	542.977294921875	2	542.830995	1083.64744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.765	1	74.501	74.001	75.001	0.73541								0	0	0	0.15486	1	27999	27999		18.135	8.7875	1				31652	4834	22895	23062	30891	30891					0.10895825910324675
LLKRQSHL	8	Unmodified	_LLKRQSHL_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-SECPEP	A375_MHC_IP_R2	2	498.2292785644531	2	497.811451	993.608348	-0.83331	-0.00041483	-0.31174	-0.00015519	-1.1451	-0.00057002	497.81142018412226	38.689	0.40756	39.463	39.25	39.658	0.77451					10	7	2	0	0	0	0.972	1	14230	14230		0.79363	0	1	1647700			31653	8815	22896	23063	30892	30892					0.11128861670999868
LLKRVDQNW	9	Unmodified	_LLKRVDQNW_					0	0	0		nc|ENSG00000154556|O94875-7|SORBS2;nc|ENSG00000154556|O94875|SORBS2;nc|ENSG00000154556|O94875-11|SORBS2;ENSG00000154556|ENST00000695409|SORBS2;nc|ENSG00000154556|O94875-9|SORBS2;nc|ENSG00000154556|O94875-5|SORBS2;nc|ENSG00000154556|O94875-3|SORBS2;nc|ENSG00000154556|O94875-8|SORBS2;nc|ENSG00000154556|O94875-2|SORBS2;nc|ENSG00000154556|O94875-4|SORBS2;nc|ENSG00000154556|O94875-12|SORBS2;nc|ENSG00000154556|O94875-10|SORBS2	nc|ENSG00000154556|O94875-7|SORBS2	nc|ENSG00000154556|O94875-7|SORBS2	MULTI-SECPEP	A375_MHC_IP_R1	1	586.7324829101562	2	586.332747	1170.65094	-0.1749	-0.00010255	0.235	0.00013779	0.060095	3.5236E-05	586.3328215662392	40.686	0.25351	40.686	40.559	40.813	0					6	4	2	0	0	0	0.28475	1	14030	14030		48.346	0	1	3866600			31654	6096	22897	23064	30893	30893					0.07244212008549766
LLKRVDQNW	9	Unmodified	_LLKRVDQNW_					0	0	0		nc|ENSG00000154556|O94875-7|SORBS2;nc|ENSG00000154556|O94875|SORBS2;nc|ENSG00000154556|O94875-11|SORBS2;ENSG00000154556|ENST00000695409|SORBS2;nc|ENSG00000154556|O94875-9|SORBS2;nc|ENSG00000154556|O94875-5|SORBS2;nc|ENSG00000154556|O94875-3|SORBS2;nc|ENSG00000154556|O94875-8|SORBS2;nc|ENSG00000154556|O94875-2|SORBS2;nc|ENSG00000154556|O94875-4|SORBS2;nc|ENSG00000154556|O94875-12|SORBS2;nc|ENSG00000154556|O94875-10|SORBS2	nc|ENSG00000154556|O94875-7|SORBS2	nc|ENSG00000154556|O94875-7|SORBS2	MULTI-MATCH	A375_MHC_IP_R2	2		2	586.332747	1170.65094	-0.58247	-0.00034152	0.041569	2.4373E-05	-0.54091	-0.00031715	586.3326949393916	39.81	0.35577	40.585	40.371	40.727	0.77451	-0.050896	-1.8736E-05	NaN	48.346	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5404200			31655	6096	22897	23064							0.07244212008549766
LLKSCSCLL	9	Unmodified	_LLKSCSCLL_					0	0	0			REV__ENST00000375224.1_1_1:19431196-19431406:-|nuORF	REV__ENST00000375224.1_1_1:19431196-19431406:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	490.6687927246094	2	490.269381	978.524209	-0.29904	-0.00014661	-0.30384	-0.00014897	-0.60288	-0.00029557	490.26927149423614	75.285	0.80865	75.285	74.805	75.614	0					33	15	4	0	0	0	0.27715	1	27391	27391		32.305	0	1	9164500	+		31656	24124	22898	23065	30894	30894					0.034088264675574464
LLKSDLTAV	9	Unmodified	_LLKSDLTAV_					0	0	0		ENST00000465020.5_1_3:38519799-38524820:+|nuORF;ENSG00000114739|ENST00000352511|ACVR2B	ENST00000465020.5_1_3:38519799-38524820:+|nuORF	ENST00000465020.5_1_3:38519799-38524820:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	480.6915588378906	2	480.292225	958.569897	-0.7922	-0.00038049	-2.6841	-0.0012892	-3.4763	-0.0016697	480.2920125037481	72.061	0.81121	72.795	72.465	73.276	0.73421					30	15	3	0	0	0	0.061442	1	27336	27336		63.961	11.692	1	5713300			31657	3240	22899	23066	30895	30895					0.08895511245793841
LLKSHSRTL	9	Unmodified	_LLKSHSRTL_					0	0	0		ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000595897.5_1_19:42407837-42410617:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	528.2217407226562	2	527.822015	1053.62948	-0.54944	-0.00029	0.040456	2.1353E-05	-0.50898	-0.00026865	527.8219855873414	34.194	0.8597	34.194	33.748	34.608	0					51	16	4	0	0	0	0.63622	1	11153	11153		20.454	1.0917	1	46204000			31658	1641	22900	23067	30896	30896					0.10480826979846825
LLKSRDELL	9	Unmodified	_LLKSRDELL_					0	0	0		ENST00000357461.6_1_14:67937818-67938346:-|nuORF	ENST00000357461.6_1_14:67937818-67938346:-|nuORF	ENST00000357461.6_1_14:67937818-67938346:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	544.2286376953125	2	543.829506	1085.64446	-0.94633	-0.00051464	-0.15088	-8.2054E-05	-1.0972	-0.0005967	543.8293873423227	66.478	0.61338	67.214	66.882	67.495	0.73631					20	11	2	0	0	0	0.28475	1	25194	25194		48.346	10.372	1	2480500			31659	10982	22901	23068	30897	30897					0.10506274057183873
LLKTDRLPL	9	Unmodified	_LLKTDRLPL_					0	0	0			REV__ENST00000503369.1_1_4:88036121-88046296:+|nuORF	REV__ENST00000503369.1_1_4:88036121-88046296:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	535.177490234375	2	534.842416	1067.67028	-0.83858	-0.00044851	0.79458	0.00042497	-0.043997	-2.3532E-05	535.3441097218625	65.937	0.25427	65.937	65.768	66.022	0					6	4	2	0	0	0	0.78348	1	23883	23883		1.8442	1.0506	1	691610	+		31660	21148	22902	23069	30898	30898					0.1391516829946795
LLKTREKPRET	11	Unmodified	_LLKTREKPRET_					0	0	0		ENST00000609104.5_1_10:11504347-11504431:-|nuORF	ENST00000609104.5_1_10:11504347-11504431:-|nuORF	ENST00000609104.5_1_10:11504347-11504431:-|nuORF	MSMS	A375_MHC_IP_R2	2	457.6823425292969	3	457.608659	1369.80415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.74	1	134.88	134.38	135.38	0.13901								0	0	0	0.1635	1	52998	52998		0.50596	0.051438	1				31661	13931	22903	23070	30899	30899					0.1340378233435331
LLKVAEILKE	10	Unmodified	_LLKVAEILKE_					0	0	0		ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MSMS	A375_MHC_IP_R1	1	385.96466064453125	3	385.91643	1154.72746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.192	1	48.192	47.692	48.692	0								0	0	0	0.15496	1	16988	16988		4.7159	0.52642	1				31662	4718	22904	23071	30900	30900					0.1562859078519523
LLKWRVTI	8	Unmodified	_LLKWRVTI_					0	0	0			REV__ENST00000451020.6_1_4:419554-419923:-|nuORF	REV__ENST00000451020.6_1_4:419554-419923:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	515.234130859375	2	514.834394	1027.65424	-0.91922	-0.00047325	0.54608	0.00028114	-0.37315	-0.00019211	514.8344899610199	66.23	0.56133	66.968	66.73	67.292	0.73779					20	10	3	0	0	0	0.94479	1	25108	25108		8.5933	0	1	2557500	+		31663	24890	22905	23072	30901	30901					0.14151506853227147
LLKWVMKLHV	10	Unmodified	_LLKWVMKLHV_					0	0	0			REV__ENST00000342992.10_3_2:179481608-179481719:-|nuORF	REV__ENST00000342992.10_3_2:179481608-179481719:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	634.2905883789062	2	633.891386	1265.76822	-1.0168	-0.00064452	0.60084	0.00038087	-0.41593	-0.00026365	633.891396402236	149.46	2.2407	149.46	147.76	150	0					256	74	4	0	0	0	0.94862	1	56689	56689		1.6526	1.1943	1	1646700	+		31664	23745	22906	23073	30902	30902					0.14596653623812017
LLKYKERT	8	Unmodified	_LLKYKERT_					0	0	0			REV__tr|U7SFM6|U7SFM6_FUSNUCRISPR-associatedendoribonucleaseCas2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas2PE=3SV=1	REV__tr|U7SFM6|U7SFM6_FUSNUCRISPR-associatedendoribonucleaseCas2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas2PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	526.2185668945312	2	525.818941	1049.62333	-0.45049	-0.00023688	-0.49846	-0.0002621	-0.94895	-0.00049898	525.8186020247956	44.372	0.55725	45.141	44.883	45.441	0.76909					22	10	3	0	0	0	0.9187	1	16549	16549		19.257	3.4098	1	10766000	+		31665	28167	22907	23074	30903	30903					0.10050308748327552
LLKYMKHTV	9	Unmodified	_LLKYMKHTV_					0	0	0		ENSG00000172992|ENST00000651974|DCAKD	ENSG00000172992|ENST00000651974|DCAKD	ENSG00000172992|ENST00000651974|DCAKD	MULTI-MSMS	A375_MHC_IP_R2	2	378.58392333984375	3	378.223088	1131.64744	-0.21434	-8.107E-05	-1.1059	-0.00041826	-1.3202	-0.00049933	378.5578763944504	21.058	1.8809	21.677	20.812	22.693	0.61932					104	36	5	0	0	0	0.63811	1	6317	6317		8.1555	3.4396	1	21702000			31666	7757	22908	23075	30904	30904					0.08687825910328684
LLKYSLPKRY	10	Unmodified	_LLKYSLPKRY_					0	0	0			REV__CCL27|p.D44Y|1|0.89|ENSG00000213927|chr9:34662357-34662357|C/A|missense_variant	REV__CCL27|p.D44Y|1|0.89|ENSG00000213927|chr9:34662357-34662357|C/A|missense_variant	MSMS	A375_MHC_IP_R1	1	640.686279296875	2	640.889898	1279.76524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.33	1	103.33	102.83	103.83	0								0	0	0	0.1552	1	37959	37959		3.9444	2.1002	1		+		31667	15604	22909	23076	30905	30905					0.13655101770655165
LLLAAARLAAA	11	Unmodified	_LLLAAARLAAA_					0	0	0		ENST00000469684.1_1_15:44038662-44048907:+|nuORF;ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3	ENST00000469684.1_1_15:44038662-44048907:+|nuORF	ENST00000469684.1_1_15:44038662-44048907:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	527.7418212890625	2	527.342584	1052.67061	-0.66235	-0.00034928	0.098369	5.1874E-05	-0.56398	-0.00029741	527.342425972349	84.089	0.55473	84.089	83.837	84.391	0					22	10	3	0	0	0	0.27744	1	30788	30788		57.722	57.722	1	3327800			31668	7148	22910	23077	30906	30906					0.1463858801932929
LLLAAARLAAA	11	Unmodified	_LLLAAARLAAA_					0	0	0		ENST00000469684.1_1_15:44038662-44048907:+|nuORF;ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3	ENST00000469684.1_1_15:44038662-44048907:+|nuORF	ENST00000469684.1_1_15:44038662-44048907:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	527.7420654296875	2	527.342584	1052.67061	-0.46866	-0.00024715	-0.44039	-0.00023224	-0.90906	-0.00047938	527.3422899967982	83.087	0.60574	83.826	83.494	84.099	0.73962					21	11	3	0	0	0	0.4173	1	31558	31558		51.63	23.143	1	5320100			31669	7148	22910	23077	30907	30907					0.1463858801932929
LLLAELEQL	9	Unmodified	_LLLAELEQL_					0	0	0			REV__nc|ENSG00000151136|A6QL63-2|ABTB3	REV__nc|ENSG00000151136|A6QL63-2|ABTB3	MULTI-SECPEP	A375_MHC_IP_R1	1	521.7130737304688	2	521.313158	1040.61176	-0.67728	-0.00035307	0.93111	0.0004854	0.25383	0.00013233	521.3135693411691	129.37	1.0152	129.37	129.25	130.26	0					43	19	3	0	0	0	0.011107	1	49764	49764		134.3	0	1	71677000	+		31670	19739	22911	23078	30908	30908					0.09308066934318049
LLLAELEQL	9	Unmodified	_LLLAELEQL_					0	0	0			REV__nc|ENSG00000151136|A6QL63-2|ABTB3	REV__nc|ENSG00000151136|A6QL63-2|ABTB3	MULTI-SECPEP	A375_MHC_IP_R2	2	521.7125244140625	2	521.313158	1040.61176	-0.66318	-0.00034573	-0.36747	-0.00019157	-1.0307	-0.00053729	521.3128784616399	129.15	0.5563	129.39	129.21	129.77	0.23946					24	10	3	0	0	0	0.011107	1	50753	50753		122.18	0	1	44403000	+		31671	19739	22911	23078	30909	30909					0.09308066934318049
LLLAHESAL	9	Unmodified	_LLLAHESAL_					0	0	0			REV__ENSG00000185988|ENST00000454744|PLK5	REV__ENSG00000185988|ENST00000454744|PLK5	MULTI-SECPEP	A375_MHC_IP_R1	1	484.18438720703125	2	483.784567	965.554582	-0.41594	-0.00020123	0.039709	1.921E-05	-0.37624	-0.00018202	483.7844713432418	94.401	0.61026	94.401	94.041	94.651	0					24	11	3	0	0	0	0.061132	1	34671	34671		57.471	0	1	2160200	+		31672	21938	22912	23079	30910	30910					0.07042644448608826
LLLAHESAL	9	Unmodified	_LLLAHESAL_					0	0	0			REV__ENSG00000185988|ENST00000454744|PLK5	REV__ENSG00000185988|ENST00000454744|PLK5	MULTI-SECPEP	A375_MHC_IP_R2	2	484.16558837890625	2	483.784567	965.554582	-0.45716	-0.00022117	0.18492	8.9462E-05	-0.27224	-0.00013171	483.78460988750743	93.535	0.66156	94.28	93.904	94.566	0.74473					26	12	3	0	0	0	0.061132	1	35517	35517		57.471	0	1	2637300	+		31673	21938	22912	23079	30911	30911					0.07042644448608826
LLLALLLPRLP	11	Unmodified	_LLLALLLPRLP_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000018574	REV__CON__ENSEMBL:ENSBTAP00000018574	MSMS	A375_MHC_IP_R2	2	411.57183837890625	3	411.288198	1230.84277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.348	1	17.945	17.445	18.445	0.59616								0	0	0	0.16358	1	5096	5096		0.094841	0	1		+	+	31674	15842	22913	23080	30912	30912					0.23657739706823122
LLLAQLSDA	9	Unmodified	_LLLAQLSDA_					0	0	0		ENSG00000175348|ENST00000534025|TMEM9B	ENSG00000175348|ENST00000534025|TMEM9B	ENSG00000175348|ENST00000534025|TMEM9B	MULTI-MSMS	A375_MHC_IP_R1	1	472.67620849609375	2	472.276575	942.538597	-0.32799	-0.0001549	-0.52573	-0.00024829	-0.85372	-0.00040319	472.27632741010785	105.33	0.50689	105.33	105.05	105.55	0					21	9	3	0	0	0	0.0019764	1	38656	38656		144.35	39.551	1	8331400			31675	7953	22914	23081	30913	30913					0.06502938211701803
LLLAQLSDA	9	Unmodified	_LLLAQLSDA_					0	0	0		ENSG00000175348|ENST00000534025|TMEM9B	ENSG00000175348|ENST00000534025|TMEM9B	ENSG00000175348|ENST00000534025|TMEM9B	MULTI-MSMS	A375_MHC_IP_R1	1	944.7537841796875	1	943.545874	942.538597	0.1084	0.00010228	-0.63167	-0.00059601	-0.52327	-0.00049373	943.5452485870978	105.38	0.70927	105.38	105.05	105.76	0					27	13	3	0	0	0	0.22528	1	38736	38736		36.127	2.0246	1	21328000			31676	7953	22914	23081	30914	30914					0.06502938211701803
LLLAQLSDA	9	Unmodified	_LLLAQLSDA_					0	0	0		ENSG00000175348|ENST00000534025|TMEM9B	ENSG00000175348|ENST00000534025|TMEM9B	ENSG00000175348|ENST00000534025|TMEM9B	MULTI-MSMS	A375_MHC_IP_R2	2	472.67620849609375	2	472.276575	942.538597	-0.5165	-0.00024393	-0.096184	-4.5425E-05	-0.61269	-0.00028936	472.2764328160374	104.42	0.61288	105.18	104.9	105.51	0.76308					26	11	3	0	0	0	0.0022313	1	39478	39478		141.83	44.752	1	12609000			31677	7953	22914	23081	30915	30915					0.06502938211701803
LLLAWYFGSLL	11	Unmodified	_LLLAWYFGSLL_					0	0	0		ENSG00000106025|ENST00000222747|TSPAN12	ENSG00000106025|ENST00000222747|TSPAN12	ENSG00000106025|ENST00000222747|TSPAN12	MULTI-MSMS	A375_MHC_IP_R2	2	649.27294921875	2	648.373549	1294.73255	-0.66275	-0.00042971	0.16245	0.00010533	-0.5003	-0.00032438	648.3746454768785	131.54	0.96437	131.73	131.49	132.46	0.18953					65	18	5	0	0	0	0.7362	1	52006	52006		2.9952	0	1	23574000			31678	2660	22915	23082	30916	30916					0.09696894647800036
LLLCVFLF	8	Unmodified	_LLLCVFLF_					0	0	0		ENST00000546516.5_1_16:712885-713302:+|nuORF	ENST00000546516.5_1_16:712885-713302:+|nuORF	ENST00000546516.5_1_16:712885-713302:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	484.1852111816406	2	484.2879	966.561247	-0.54531	-0.00026409	-1.7053	-0.00082586	-2.2506	-0.0010899	484.287025666321	132.82	0.30637	132.82	132.64	132.95	0					7	5	2	0	0	0	0.77554	1	51221	51221		11.114	0	1	5171400			31679	13331	22916	23083	30917	30917					0.07662866075634156
LLLDLRIIL	9	Unmodified	_LLLDLRIIL_					0	0	0			REV__OR8H2|p.Q55L|1|0.12|ENSG00000181767|chr11:56105206-56105206|A/T|missense_variant	REV__OR8H2|p.Q55L|1|0.12|ENSG00000181767|chr11:56105206-56105206|A/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	541.7703857421875	2	541.37081	1080.72707	-0.82116	-0.00044455	0.57692	0.00031233	-0.24424	-0.00013223	541.3710610740727	129.52	0.55745	129.52	129.4	129.95	0					18	10	2	0	0	0	0.073067	1	49845	49845		55.503	0	1	34966000	+		31680	27702	22917	23084	30918	30918					0.18993215855994094
LLLDLRIIL	9	Unmodified	_LLLDLRIIL_					0	0	0			REV__OR8H2|p.Q55L|1|0.12|ENSG00000181767|chr11:56105206-56105206|A/T|missense_variant	REV__OR8H2|p.Q55L|1|0.12|ENSG00000181767|chr11:56105206-56105206|A/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	541.7706298828125	2	541.37081	1080.72707	-0.88041	-0.00047663	0.42359	0.00022932	-0.45682	-0.00024731	541.3710418014512	129.3	0.55354	129.54	129.42	129.97	0.23946					17	10	4	0	0	0	0.032333	1	50820	50820		72.968	0	1	25660000	+		31681	27702	22917	23084	30919	30919					0.18993215855994094
LLLDLSKGF	9	Unmodified	_LLLDLSKGF_					0	0	0			REV__MED24|p.S444F|1|0.13|ENSG00000008838|chr17:40028904-40028904|G/A|missense_variant	REV__MED24|p.S444F|1|0.13|ENSG00000008838|chr17:40028904-40028904|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	503.70281982421875	2	503.302593	1004.59063	-0.67596	-0.00034021	1.805	0.00090846	1.129	0.00056824	503.303959360861	106.17	0.81442	106.93	106.63	107.44	0.75977					21	15	2	0	0	0	0.73363	1	40159	40159		15.847	0	1	1018600	+		31682	27006	22918	23085	30920	30920					0.08852101625484465
LLLDQSLHTF	10	Unmodified	_LLLDQSLHTF_					0	0	0			REV__ENST00000524539.1_1_11:36631653-36669795:+|nuORF	REV__ENST00000524539.1_1_11:36631653-36669795:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	593.214111328125	2	593.826963	1185.63937	-0.55124	-0.00032734	0.57178	0.00033954	0.020547	1.2201E-05	593.8272624996391	68.489	0.60947	68.489	68.108	68.717	0					19	11	2	0	0	0	0.85226	1	24852	24852		14.838	2.5976	1	2028000	+		31683	25754	22919	23086	30921	30921					0.05397970194553636
LLLDQSLHTF	10	Unmodified	_LLLDQSLHTF_					0	0	0			REV__ENST00000524539.1_1_11:36631653-36669795:+|nuORF	REV__ENST00000524539.1_1_11:36631653-36669795:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	593.2136840820312	2	593.826963	1185.63937	-0.52397	-0.00031114	0.26819	0.00015926	-0.25578	-0.00015189	593.8270963806822	67.681	0.5081	68.417	68.104	68.612	0.73631					16	9	2	0	0	0	0.76414	1	25644	25644		20.454	4.6064	1	1326000	+		31684	25754	22919	23086	30922	30922					0.05397970194553636
LLLDRRRLRFS	11	Unmodified	_LLLDRRRLRFS_					0	0	0			REV__nc|ENSG00000078596|O43736-2|ITM2A	REV__nc|ENSG00000078596|O43736-2|ITM2A	MULTI-SECPEP	A375_MHC_IP_R2	2	481.6833190917969	3	482.30016	1443.87865	-0.38619	-0.00018626	-1.617	-0.00077989	-2.0032	-0.00096615	482.2990152427687	139.7	0.25204	139.76	139.6	139.85	0.059906					6	4	2	0	0	0	1.0015	1	54723	54723		0.073264	0	1	260570	+		31685	16712	22920	23087	30923	30923					0.174465899363895
LLLDSNIRL	9	Unmodified	_LLLDSNIRL_					0	0	0		nc|ENSG00000125037|Q9P0I2-2|EMC3;ENSG00000125037|ENST00000245046|EMC3;ENST00000487465.5_1_3:10011273-10028351:-|nuORF	nc|ENSG00000125037|Q9P0I2-2|EMC3	nc|ENSG00000125037|Q9P0I2-2|EMC3	MULTI-SECPEP	A375_MHC_IP_R1	1	529.2239990234375	2	528.824224	1055.63389	-0.50815	-0.00026872	-0.25001	-0.00013221	-0.75816	-0.00040093	528.8240797521624	98.481	0.6638	98.481	98.2	98.864	0					25	12	3	0	0	0	0.14572	1	36167	36167		62.573	6.3957	1	4433800			31686	3939	22921	23088	30924	30924					0.10830291402749026
LLLDSNIRL	9	Unmodified	_LLLDSNIRL_					0	0	0		nc|ENSG00000125037|Q9P0I2-2|EMC3;ENSG00000125037|ENST00000245046|EMC3;ENST00000487465.5_1_3:10011273-10028351:-|nuORF	nc|ENSG00000125037|Q9P0I2-2|EMC3	nc|ENSG00000125037|Q9P0I2-2|EMC3	MULTI-SECPEP	A375_MHC_IP_R2	2	529.22412109375	2	528.824224	1055.63389	-0.67969	-0.00035944	-0.08027	-4.2449E-05	-0.75996	-0.00040189	528.8241776806391	97.504	0.50835	98.26	98.025	98.534	0.75586					22	9	3	0	0	0	0.16764	1	37011	37011		60.074	12.325	1	3502000			31687	3939	22921	23088	30925	30925					0.10830291402749026
LLLDTEGFV	9	Unmodified	_LLLDTEGFV_					0	0	0		nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-5|PKN2	nc|ENSG00000065243|Q16513-2|PKN2	nc|ENSG00000065243|Q16513-2|PKN2	MULTI-SECPEP	A375_MHC_IP_R2	2	504.17474365234375	2	503.776408	1005.53826	-0.64397	-0.00032442	-1.4209	-0.00071581	-2.0649	-0.0010402	503.7756377039545	103.16	0.66193	103.93	103.58	104.24	0.76428					19	12	2	0	0	0	0.47368	1	39122	39122		26.884	0	1	1330500			31688	1372	22922	23089	30926	30926					0.03571518491855841
LLLDTNKQY	9	Unmodified	_LLLDTNKQY_					0	0	0		ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-SECPEP	A375_MHC_IP_R1	1	370.2730407714844	3	369.873001	1106.59717	0.2096	7.7526E-05	-0.13214	-4.8876E-05	0.07746	2.865E-05	369.872916159514	24.622	0.55562	24.622	24.397	24.953	0					18	10	2	0	0	0	0.58271	1	7042	7042		14.405	0	1	10357000			31689	3509	22923	23090	30927	30927					0.04813994786195508
LLLEHLLS	8	Unmodified	_LLLEHLLS_					0	0	0		nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	MULTI-SECPEP	A375_MHC_IP_R1	1	468.6119384765625	2	469.289485	936.564418	-0.28096	-0.00013185	0.37581	0.00017636	0.094853	4.4514E-05	469.2897145813573	104.79	0.40437	104.79	104.54	104.94	0					11	7	2	0	0	0	0.90224	1	38459	38459		19.439	0	1	700040			31690	3621	22924	23091	30928	30928					0.09359832453992567
LLLEHLLS	8	Unmodified	_LLLEHLLS_					0	0	0		nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	MULTI-MATCH	A375_MHC_IP_R2	2		2	469.289485	936.564418	-0.56982	-0.00026741	0.17517	8.2208E-05	-0.39464	-0.0001852	469.28950074061976	103.89	0.45425	104.65	104.45	104.9	0.76428	-0.066966	-6.6216E-05	NaN	19.439	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	680660			31691	3621	22924	23091							0.09359832453992567
LLLEKNFIDV	10	Unmodified	_LLLEKNFIDV_					0	0	0			REV__ENSG00000161956|ENST00000321337|SENP3	REV__ENSG00000161956|ENST00000321337|SENP3	MULTI-SECPEP	A375_MHC_IP_R1	1	402.3028564453125	3	401.904301	1202.69108	-0.62216	-0.00025005	-1.3734	-0.00055198	-1.9956	-0.00080203	401.90308749147806	134.45	0.50516	134.45	134.22	134.73	0					18	9	3	0	0	0	0.94891	1	51882	51882		0.13989	0	1	2700200	+		31692	20224	22925	23092	30929	30929					0.09783713888464263
LLLETVFHL	9	Unmodified	_LLLETVFHL_					0	0	0		ENST00000546387.1_1_12:44238581-44238653:+|nuORF	ENST00000546387.1_1_12:44238581-44238653:+|nuORF	ENST00000546387.1_1_12:44238581-44238653:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	543.2256469726562	2	542.823692	1083.63283	-0.48016	-0.00026064	1.5331	0.00083221	1.053	0.00057157	542.8245032523346	128.35	0.40433	128.35	128.23	128.63	0					10	7	2	0	0	0	0.0090323	1	49317	49317		101.72	44.251	1	12159000			31693	13330	22926	23093	30930	30930					0.09436077033865331
LLLETVFHL	9	Unmodified	_LLLETVFHL_					0	0	0		ENST00000546387.1_1_12:44238581-44238653:+|nuORF	ENST00000546387.1_1_12:44238581-44238653:+|nuORF	ENST00000546387.1_1_12:44238581-44238653:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	543.2230224609375	2	542.823692	1083.63283	-0.89149	-0.00048392	-0.004037	-2.1914E-06	-0.89553	-0.00048611	542.8236051200497	128.08	0.30522	128.35	128.22	128.53	0.26593					11	5	3	0	0	0	0.054426	1	50302	50302		81.864	31.009	1	8956000			31694	13330	22926	23093	30931	30931					0.09436077033865331
LLLFIVFLLLK	11	Unmodified	_LLLFIVFLLLK_					0	0	0			REV__OR10T2|p.Q25K|1|0.15|ENSG00000186306|chr1:158399394-158399394|G/T|missense_variant	REV__OR10T2|p.Q25K|1|0.15|ENSG00000186306|chr1:158399394-158399394|G/T|missense_variant	MSMS	A375_MHC_IP_R1	1	666.4265747070312	2	666.456885	1330.89922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.37	1	115.37	114.87	115.87	0								0	0	0	0.1636	1	42309	42309		0	0	1		+		31695	27651	22927	23094	30932	30932					0.24700367543505308
LLLFLLLLRQR	11	Unmodified	_LLLFLLLLRQR_					0	0	0		ENSG00000204577|ENST00000445347|LILRB3	ENSG00000204577|ENST00000445347|LILRB3	ENSG00000204577|ENST00000445347|LILRB3	MSMS	A375_MHC_IP_R2	2	699.8104858398438	2	699.471389	1396.92823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.88	1	143.91	143.41	144.41	0.024414								0	0	0	0.16354	1	56218	56218		0.30703	0.30703	1				31696	9459	22928	23095	30933	30933					0.24563904892488608
LLLFMSVPV	9	Unmodified	_LLLFMSVPV_					0	0	0		ENST00000466307.1_1_7:134832973-134837580:+|nuORF;ENST00000275767.3_1_7:134832829-134849312:+|nuORF	ENST00000466307.1_1_7:134832973-134837580:+|nuORF	ENST00000466307.1_1_7:134832973-134837580:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	509.7212219238281	2	509.803914	1017.59328	-0.54224	-0.00027644	-0.026539	-1.353E-05	-0.56878	-0.00028997	509.80378192639336	114.12	2.8961	114.83	113.46	116.36	0.70985					121	56	3	0	0	0	0.56939	1	43491	43491		13.508	4.1248	1	13671000			31697	10405	22929	23096	30934	30934					0.08518233758786664
LLLFMVHRLRQ	11	Unmodified	_LLLFMVHRLRQ_					0	0	0		ENST00000467659.1_1_22:19029254-19044511:-|nuORF;nc|ENSG00000070413|P98153-2|DGCR2;ENSG00000070413|ENST00000263196|DGCR2	ENST00000467659.1_1_22:19029254-19044511:-|nuORF	ENST00000467659.1_1_22:19029254-19044511:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	714.331298828125	2	713.429199	1424.84384	-0.56239	-0.00040123	0.90181	0.00064338	0.33942	0.00024215	714.4326064995714	142.35	0.8623	142.38	141.87	142.74	0.030731					48	16	4	0	0	0	0.73795	1	55618	55618		1.3295	0.9789	1	2978800			31698	1492	22930	23097	30935	30935					0.14841630804107808
LLLFMVHRLRQ	11	Unmodified	_LLLFMVHRLRQ_					0	0	0		ENST00000467659.1_1_22:19029254-19044511:-|nuORF;nc|ENSG00000070413|P98153-2|DGCR2;ENSG00000070413|ENST00000263196|DGCR2	ENST00000467659.1_1_22:19029254-19044511:-|nuORF	ENST00000467659.1_1_22:19029254-19044511:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	713.429199	1424.84384	-0.94055	-0.00067102	0.72412	0.00051661	-0.21643	-0.00015441	713.4297142186141	142.28	0.7084	142.28	141.83	142.54	0	-0.050133	-7.8075E-05	NaN	1.3295	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2632300			31699	1492	22930	23097							0.14841630804107808
LLLFVQRGQQF	11	Unmodified	_LLLFVQRGQQF_					0	0	0			REV__MER4-int_dup2801|chr22:11928496-11929057:+|1.3088795502841724|0.3924253001856876|1.74|451.0|13|2|sense	REV__MER4-int_dup2801|chr22:11928496-11929057:+|1.3088795502841724|0.3924253001856876|1.74|451.0|13|2|sense	MULTI-MSMS	A375_MHC_IP_R2	2	450.27703857421875	3	450.262712	1347.76631	-0.62057	-0.00027942	1.9603	0.00088267	1.3398	0.00060325	450.5980608190244	23.148	0.35631	23.778	23.572	23.928	0.63014					9	6	2	0	0	0	0.73679	1	7464	7464		2.4348	0	1	1539200	+		31700	27008	22931	23098	30936	30936					0.10633316139569615
LLLGEGQGP	9	Unmodified	_LLLGEGQGP_					0	0	0			REV__nc|ENSG00000015520|Q9UHC9-4|NPC1L1	REV__nc|ENSG00000015520|Q9UHC9-4|NPC1L1	MSMS	A375_MHC_IP_R2	2	442.1446228027344	2	442.247818	882.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.918	1	72.652	72.152	73.152	0.73421								0	0	0	0.15486	1	27290	27290		13.508	3.3245	1		+		31701	16247	22932	23099	30937	30937					0.03514096006153977
LLLGTVLLSL	10	Unmodified	_LLLGTVLLSL_					0	0	0		CBFA2T2|p.I175Ffs*104|1|0.4|ENSG00000078699|chr20:33619591-33619591|G/-|frameshift_variant	CBFA2T2|p.I175Ffs*104|1|0.4|ENSG00000078699|chr20:33619591-33619591|G/-|frameshift_variant	CBFA2T2|p.I175Ffs*104|1|0.4|ENSG00000078699|chr20:33619591-33619591|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	521.74951171875	2	521.349543	1040.68453	-0.032955	-1.7181E-05	-0.24891	-0.00012977	-0.28186	-0.00014695	521.3494134985092	126.94	0.25089	126.94	126.81	127.06	0					6	4	2	0	0	0	0.13478	1	48593	48593		56.177	2.3442	1	15750000			31702	301	22933	23100	30938	30938					0.16581820727765262
LLLGTVLLSL	10	Unmodified	_LLLGTVLLSL_					0	0	0		CBFA2T2|p.I175Ffs*104|1|0.4|ENSG00000078699|chr20:33619591-33619591|G/-|frameshift_variant	CBFA2T2|p.I175Ffs*104|1|0.4|ENSG00000078699|chr20:33619591-33619591|G/-|frameshift_variant	CBFA2T2|p.I175Ffs*104|1|0.4|ENSG00000078699|chr20:33619591-33619591|G/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	521.349543	1040.68453	-0.58208	-0.00030347	0.067456	3.5168E-05	-0.51462	-0.0002683	521.3492031801563	126.59	0.20165	126.87	126.72	126.92	0.27937	-0.034175	0.00020341	NaN	56.177	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2192100			31703	301	22933	23100							0.16581820727765262
LLLHAAGVLL	10	Unmodified	_LLLHAAGVLL_					0	0	0		ENSG00000174165|ENST00000310442|ZDHHC24	ENSG00000174165|ENST00000310442|ZDHHC24	ENSG00000174165|ENST00000310442|ZDHHC24	MULTI-SECPEP	A375_MHC_IP_R1	1	511.133544921875	2	510.334227	1018.6539	-0.63609	-0.00032462	0.10346	5.2801E-05	-0.53263	-0.00027182	510.3343991440902	91.014	0.75998	91.014	90.641	91.401	0					20	14	2	0	0	0	0.78079	1	33483	33483		18.135	2.2878	1	982540			31704	7860	22934	23101	30939	30939					0.1453208713337517
LLLHLLLIKL	10	Unmodified	_LLLHLLLIKL_					0	0	0		ENST00000256442.9_1_5:68473515-68473575:+|nuORF	ENST00000256442.9_1_5:68473515-68473575:+|nuORF	ENST00000256442.9_1_5:68473515-68473575:+|nuORF	MSMS	A375_MHC_IP_R1	1	595.0115356445312	2	594.925752	1187.83695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.45	1	107.45	106.95	107.95	0								0	0	0	0.15642	1	39425	39425		0	0	1				31705	10239	22935	23102	30940	30940					0.2505464119519729
LLLHLSPGAAG	11	Unmodified	_LLLHLSPGAAG_					0	0	0		nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;ENSG00000104447|ENST00000395715|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	MSMS	A375_MHC_IP_R2	2	524.7080688476562	2	524.811116	1047.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.031	1	98.791	98.291	99.291	0.75977								0	0	0	0.16051	1	37198	37198		13.906	1.3745	1				31706	2514	22936	23103	30941	30941					0.08578022231290561
LLLILLRQWKR	11	Unmodified	_LLLILLRQWKR_					0	0	0		nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	nc|ENSG00000095319|Q5SRE5-2|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	MSMS	A375_MHC_IP_R1	1	726.5125732421875	2	726.482289	1450.95002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.8	1	126.8	126.3	127.3	0								0	0	0	0.16334	1	48483	48483		1.3295	0.9789	1				31707	2039	22937	23104	30942	30942					0.24258709641026144
LLLIPNVLKV	10	Unmodified	_LLLIPNVLKV_					0	0	0		ENSG00000147234|ENST00000683843|FRMPD3;ENST00000477796.1_1_X:106788951-106797806:+|nuORF	ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	MULTI-SECPEP	A375_MHC_IP_R1	1	561.70751953125	2	561.38646	1120.75837	-0.72192	-0.00040528	2.1162	0.001188	1.3943	0.00078274	561.3881683593627	90.871	0.509	90.871	90.437	90.946	0					11	9	2	0	0	0	0.93615	1	33347	33347		0.40072	0	1	1396800			31708	5672	22938	23105	30943	30943					0.20281788890088137
LLLKEPQI	8	Unmodified	_LLLKEPQI_					0	0	0			REV__nc|ENSG00000089012|Q9P1W8-2|SIRPG	REV__nc|ENSG00000089012|Q9P1W8-2|SIRPG	MULTI-MSMS	A375_MHC_IP_R1	1	477.70477294921875	2	477.305136	952.595718	-0.49537	-0.00023644	0.18519	8.8392E-05	-0.31018	-0.00014805	477.3051866264213	74.748	0.70967	74.748	74.502	75.211	0					28	13	3	0	0	0	0.68328	1	27244	27244		39.957	0	1	2757000	+		31709	16899	22939	23106	30944	30944					0.11752405488095974
LLLKGVEAV	9	Unmodified	_LLLKGVEAV_					0	0	0		ENST00000504807.5_1_5:176939673-176941736:-|nuORF;ENST00000507900.5_1_5:176938794-176942272:-|nuORF;ENST00000503078.5_1_5:176938794-176943460:-|nuORF;ENSG00000183258|ENST00000330503|DDX41;DDX41|p.E450K|1|0.21|ENSG00000183258|chr5:177512831-177512831|C/T|missense_variant;ENST00000505081.5_1_5:176938794-176940626:-|nuORF	ENST00000504807.5_1_5:176939673-176941736:-|nuORF	ENST00000504807.5_1_5:176939673-176941736:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	471.7048645019531	2	471.305136	940.595718	-0.48644	-0.00022926	-0.46655	-0.00021989	-0.95299	-0.00044915	471.3049936205033	69.159	0.50729	69.894	69.626	70.133	0.73511					15	9	2	0	0	0	0.49205	1	26231	26231		34.402	15.145	1	839440			31710	8479	22940	23107	30945	30945					0.12304405488100656
LLLLCNQLP	9	Unmodified	_LLLLCNQLP_					0	0	0		ENST00000525123.5_1_11:47736206-47736894:-|nuORF	ENST00000525123.5_1_11:47736206-47736894:-|nuORF	ENST00000525123.5_1_11:47736206-47736894:-|nuORF	MSMS	A375_MHC_IP_R1	1	513.7228393554688	2	513.804445	1025.59434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.03	1	132.03	131.53	132.53	0								0	0	0	0.15486	1	50909	50909		13.508	2.3934	1				31711	13066	22941	23108	30946	30946					0.08256448127690419
LLLLIILVVNL	11	Unmodified	_LLLLIILVVNL_					0	0	0		ENSG00000102683|ENST00000218867|SGCG	ENSG00000102683|ENST00000218867|SGCG	ENSG00000102683|ENST00000218867|SGCG	MSMS	A375_MHC_IP_R2	2	618.4392700195312	2	618.438692	1234.86283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.12	1	105.89	105.39	106.39	0.76308								0	0	0	0.16334	1	39767	39767		1.3295	0	1				31712	2387	22942	23109	30947	30947					0.2547949064680779
LLLLLLFPKRR	11	Unmodified	_LLLLLLFPKRR_					0	0	0			REV__ENST00000374369.7_1_20:34025707-34025902:-|nuORF	REV__ENST00000374369.7_1_20:34025707-34025902:-|nuORF	MSMS	A375_MHC_IP_R2	2	691.544677734375	2	691.473932	1380.93331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.756	1	96.506	96.006	97.006	0.75045								0	0	0	0.1636	1	36369	36369		0	0	1		+		31713	24106	22943	23110	30948	30948					0.2580820875509744
LLLLLLKPLY	10	Unmodified	_LLLLLLKPLY_					0	0	0		OR51F1|p.P167L|1|0.13|ENSG00000280021|chr11:4769439-4769439|G/A|missense_variant	OR51F1|p.P167L|1|0.13|ENSG00000280021|chr11:4769439-4769439|G/A|missense_variant	OR51F1|p.P167L|1|0.13|ENSG00000280021|chr11:4769439-4769439|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	599.7000732421875	2	599.91231	1197.81007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.284	1	78.027	77.527	78.527	0.74293								0	0	0	0.15585	1	29348	29348		1.8442	0.36234	1				31714	15082	22944	23111	30949	30949					0.21907532583986722
LLLLLLKRKV	10	Unmodified	_LLLLLLKRKV_					0	0	0			REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF	REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF	MSMS	A375_MHC_IP_R1	1	605.1265869140625	2	604.944476	1207.8744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.75	1	100.75	100.25	101.25	0								0	0	0	0.15628	1	37031	37031		0.45834	0	1		+		31715	24727	22945	23112	30950	30950					0.27877732460774496
LLLLLLLFHVP	11	Unmodified	_LLLLLLLFHVP_					0	0	0			REV__ENSG00000178473|ENST00000380433|UCN3	REV__ENSG00000178473|ENST00000380433|UCN3	MSMS	A375_MHC_IP_R1	1	646.2396850585938	2	645.931035	1289.84752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.329	1	86.329	85.829	86.829	0								0	0	0	0.16331	1	31653	31653		1.4819	0.15237	1		+		31716	21506	22946	23113	30951	30951					0.21418623849581309
LLLLLLLLL	9	Unmodified	_LLLLLLLLL_					0	0	0		ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000054654|Q8WXH0-10|SYNE2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000131042|Q8N423-1|LILRB2;nc|ENSG00000054654|Q8WXH0-4|SYNE2;DCHS1|p.P557Lfs*2|1|0.33|ENSG00000166341|chr11:6639944-6639944|G/-|frameshift_variant;nc|ENSG00000054654|Q8WXH0-5|SYNE2;nc|ENSG00000054654|Q8WXH0-12|SYNE2;nc|ENSG00000131042|Q8N423-3|LILRB2;ENSG00000169174|ENST00000302118|PCSK9;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;PLXNA1|p.P22L|1|0.42|ENSG00000114554|chr3:126988658-126988658|C/T|missense_variant;ENSG00000114554|ENST00000393409|PLXNA1;PLXNA1|p.G1482Hfs*5|1|0.07|ENSG00000114554|chr3:127028020-127028026|GGGTGAG/-|frameshift_variant;ENSG00000168056|ENST00000301873|LTBP3;nc|ENSG00000168056|Q9NS15-2|LTBP3;nc|ENSG00000054654|Q8WXH0-13|SYNE2;ENSG00000243232|ENST00000289269|PCDHAC2;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;ENSG00000283654|ENST00000637218|CIROP;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;nc|ENSG00000131042|Q8N423-4|LILRB2;ENST00000476805.2_1_2:64977750-64977942:-|nuORF;ENSG00000142538|ENST00000270631|PTH2;ENST00000395811.9_1_17:17088208-17088493:+|nuORF;ENST00000293778.10_2_17:4636851-4637124:-|nuORF;ENST00000536100.1_1_12:133182714-133186967:-|nuORF;ENST00000532883.5_1_11:46112101-46142581:-|nuORF;ENST00000323180.10_1_11:46105825-46142581:-|nuORF;nc|ENSG00000137161|Q9BT09-2|CNPY3;ENST00000530312.1_1_11:46142070-46142581:-|nuORF;ENST00000529734.5_1_11:46105847-46142581:-|nuORF;nc|ENSG00000054654|Q8WXH0-11|SYNE2;ENSG00000204583|ENST00000376608|LRCOL1;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000054654|Q8WXH0-6|SYNE2;nc|ENSG00000204301|Q99466-3|NOTCH4;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;ENSG00000161921|ENST00000293778|CXCL16;ENSG00000184992|ENST00000341446|BRI3BP;ENSG00000164897|ENST00000297533|TMUB1;nc|ENSG00000213402|Q14761|PTPRCAP;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;ENST00000482636.1_1_6:26384034-26385742:+|nuORF;nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;ENSG00000162337|ENST00000294304|LRP5;nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;ENSG00000109758|ENST00000382774|HGFAC;ENSG00000143126|ENST00000271332|CELSR2;ENSG00000166341|ENST00000299441|DCHS1;ENSG00000182578|ENST00000675795|CSF1R;ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000204301|ENST00000375023|NOTCH4;NOTCH4|p.A1496Lfs*19|1|0.11|ENSG00000204301|chr6:32198975-32198976|-/CCCAAGTCTCCCTTTTTAGTAGAAAGTAG|frameshift_variant;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;ENSG00000083807|ENST00000263093|SLC27A5;ENSG00000134917|ENST00000257359|ADAMTS8;ENSG00000149451|ENST00000356518|ADAM33;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000141096|ENST00000268793|DPEP3;ENST00000467485.5_1_6:26384034-26390495:+|nuORF;nc|ENSG00000124508|Q8WVV5-2|BTN2A2;nc|ENSG00000124508|Q8WVV5-4|BTN2A2;ENSG00000124508|ENST00000356709|BTN2A2;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6-3|LILRB1;ENSG00000104972|ENST00000324602|LILRB1;ENST00000462628.5_1_19:55146093-55147330:+|nuORF;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC;ENSG00000064601|ENST00000646241|CTSA;nc|ENSG00000064601|P10619-2|CTSA;ENSG00000125810|ENST00000246006|CD93;ENSG00000137161|ENST00000372836|CNPY3;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2;ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000185033|Q9NPR2-2|SEMA4B	ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000054654|Q8WXH0|SYNE2;REV__ENSG00000150893|ENST00000280481|FREM2;ENSG00000162337|ENST00000294304|LRP5;REV__ENSG00000166341|ENST00000299441|DCHS1;REV__PLXNA1|p.G1482Hfs*5|1|0.07|ENSG00000114554|chr3:127028020-127028026|GGGTGAG/-|frameshift_variant;nc|ENSG00000001036|Q9BTY2-2|FUCA2;nc|ENSG00000115155|Q9HC10-4|OTOF;REV__nc|ENSG00000054654|Q8WXH0|SYNE2;REV__nc|ENSG00000131042|Q8N423-4|LILRB2;ENSG00000109758|ENST00000382774|HGFAC;ENSG00000143126|ENST00000271332|CELSR2;REV__nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000166341|ENST00000299441|DCHS1;REV__ENSG00000168056|ENST00000301873|LTBP3;REV__ENSG00000143126|ENST00000271332|CELSR2;ENSG00000182578|ENST00000675795|CSF1R;REV__ENSG00000083807|ENST00000263093|SLC27A5;REV__nc|ENSG00000213402|Q14761|PTPRCAP;ENSG00000150893|ENST00000280481|FREM2;REV__nc|ENSG00000115155|Q9HC10-4|OTOF;REV__ENSG00000169174|ENST00000302118|PCSK9;ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;REV__nc|ENSG00000129214|P04278-4|SHBG;ENSG00000134917|ENST00000257359|ADAMTS8;ENSG00000149451|ENST00000356518|ADAM33;REV__ENSG00000109758|ENST00000382774|HGFAC;ENSG00000141096|ENST00000268793|DPEP3;REV__ENST00000413911.1_1_2:191745560-191746172:-|nuORF;REV__nc|ENSG00000157193|Q14114-4|LRP8;REV__ENSG00000141096|ENST00000268793|DPEP3;ENST00000467485.5_1_6:26384034-26390495:+|nuORF;REV__ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000064601|ENST00000646241|CTSA;ENSG00000125810|ENST00000246006|CD93;ENSG00000137161|ENST00000372836|CNPY3;nc|ENSG00000155093|Q92932-2|PTPRN2;ENSG00000185033|ENST00000411539|SEMA4B;REV__ENSG00000001036|ENST00000002165|FUCA2;REV__nc|ENSG00000124508|Q8WVV5-3|BTN2A2;REV__ENSG00000134917|ENST00000257359|ADAMTS8;REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2	nc|ENSG00000054654|Q8WXH0|SYNE2	MSMS	A375_MHC_IP_R2	2	518.9712524414062	2	518.890847	1035.76714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.473	1	44.245	43.745	44.745	0.7724								0	0	0	0.15486	1	16196	16196		0.6015	0	1			+	31717	1262;16407;19731;5867;7061;8702;6518;20671;17595;3274;1787;2889;16812;2560;20913;17857;19335;8633;5346;841;4864;20017;19245;3990;6125;1353;16080;9804;21928;18310;3908;9425;5215;5805;4627;18483;18812;27488;8420;20823;22803;18583;17830;24498;22806	22947	23114	30952	30952					0.25068762526552746
LLLLLLLVLLL	11	Unmodified	_LLLLLLLVLLL_					0	0	0		ENST00000483836.1_1_22:50500014-50511179:-|nuORF;nc|ENSG00000100427|Q15049-2|MLC1;ENSG00000100427|ENST00000311597|MLC1	ENST00000483836.1_1_22:50500014-50511179:-|nuORF	ENST00000483836.1_1_22:50500014-50511179:-|nuORF	MSMS	A375_MHC_IP_R1	1	624.932373046875	2	624.967086	1247.91962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.45	1	116.45	115.95	116.95	0								0	0	0	0.1636	1	42714	42714		0	0	1				31718	2179	22948	23115	30953	30953					0.30557538203311196
LLLLLLLVLLL	11	Unmodified	_LLLLLLLVLLL_					0	0	0		ENST00000483836.1_1_22:50500014-50511179:-|nuORF;nc|ENSG00000100427|Q15049-2|MLC1;ENSG00000100427|ENST00000311597|MLC1	ENST00000483836.1_1_22:50500014-50511179:-|nuORF	ENST00000483836.1_1_22:50500014-50511179:-|nuORF	MSMS	A375_MHC_IP_R1	1	624.8546752929688	2	624.967086	1247.91962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.51	1	118.51	118.01	119.01	0								0	0	0	0.1636	1	43658	43658		0	0	1				31719	2179	22948	23115	30954	30954					0.30557538203311196
LLLLLLLVLLL	11	Unmodified	_LLLLLLLVLLL_					0	0	0		ENST00000483836.1_1_22:50500014-50511179:-|nuORF;nc|ENSG00000100427|Q15049-2|MLC1;ENSG00000100427|ENST00000311597|MLC1	ENST00000483836.1_1_22:50500014-50511179:-|nuORF	ENST00000483836.1_1_22:50500014-50511179:-|nuORF	MSMS	A375_MHC_IP_R2	2	624.9649047851562	2	624.967086	1247.91962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.498	1	18.094	17.594	18.594	0.59616								0	0	0	0.1636	1	5148	5148		0	0	1				31720	2179	22948	23115	30955	30955					0.30557538203311196
LLLLLLRLLL	10	Unmodified	_LLLLLLRLLL_					0	0	0		ENST00000498707.5_1_3:64673464-64673620:-|nuORF	ENST00000498707.5_1_3:64673464-64673620:-|nuORF	ENST00000498707.5_1_3:64673464-64673620:-|nuORF	MSMS	A375_MHC_IP_R1	1	596.9436645507812	2	596.941402	1191.86825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.147	1	80.147	79.647	80.647	0								0	0	0	0.15628	1	29261	29261		0.45834	0	1				31721	12766	22949	23116	30956	30956					0.27999214229271274
LLLLLLRLLLR	11	Unmodified	_LLLLLLRLLLR_					0	0	0		ENST00000498707.5_1_3:64673464-64673620:-|nuORF	ENST00000498707.5_1_3:64673464-64673620:-|nuORF	ENST00000498707.5_1_3:64673464-64673620:-|nuORF	MSMS	A375_MHC_IP_R1	1	675.3896484375	2	674.991958	1347.96936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.5	1	146.5	146	147	0								0	0	0	0.1636	1	56042	56042		0	0	1				31722	12766	22950	23117	30957	30957					0.30929665931967065
LLLLLPLPVP	10	Unmodified	_LLLLLPLPVP_					0	0	0		PRF1|p.H398Lfs*23|1|0.33|ENSG00000180644|chr10:70598528-70598529|-/TA|frameshift_variant;PRF1|p.C397Sfs*60|1|0.32|ENSG00000180644|chr10:70598530-70598531|GC/-|frameshift_variant;ENSG00000180644|ENST00000441259|PRF1	PRF1|p.H398Lfs*23|1|0.33|ENSG00000180644|chr10:70598528-70598529|-/TA|frameshift_variant	PRF1|p.H398Lfs*23|1|0.33|ENSG00000180644|chr10:70598528-70598529|-/TA|frameshift_variant	MSMS	A375_MHC_IP_R1	1	363.2815856933594	3	363.254494	1086.74165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.356	1	27.356	26.856	27.856	0								0	0	0	0.15513	1	8286	8286		4.1895	1.4543	1				31723	8307	22951	23118	30958	30958					0.2017528800411128
LLLLLPRGFQP	11	Unmodified	_LLLLLPRGFQP_					0	0	0		ENSG00000109758|ENST00000382774|HGFAC	ENSG00000109758|ENST00000382774|HGFAC	ENSG00000109758|ENST00000382774|HGFAC	MSMS	A375_MHC_IP_R1	1	633.9016723632812	2	633.900266	1265.78598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.07	1	122.07	121.57	122.57	0								0	0	0	0.16302	1	45384	45384		2.9952	1.3426	1				31724	2889	22952	23119	30959	30959					0.16371692150323724
LLLLLQIPRVV	11	Unmodified	_LLLLLQIPRVV_					0	0	0			REV__ENST00000454498.6_1_8:19363479-19448754:-|nuORF	REV__ENST00000454498.6_1_8:19363479-19448754:-|nuORF	MSMS	A375_MHC_IP_R2	2	638.8589477539062	2	638.939391	1275.86423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.313	1	98.069	97.569	98.569	0.75586								0	0	0	0.16353	1	36937	36937		0.35063	0	1		+		31725	24920	22953	23120	30960	30960					0.23733124735508682
LLLLRLVCL	9	Unmodified	_LLLLRLVCL_					0	0	0		nc|ENSG00000258388|Q9UMR5-2|PPT2	nc|ENSG00000258388|Q9UMR5-2|PPT2	nc|ENSG00000258388|Q9UMR5-2|PPT2	MULTI-SECPEP	A375_MHC_IP_R2	2	1055.2900390625	1	1055.70093	1054.69366	0.09655	0.00010193	3.1128	0.0032862	3.2093	0.0033881	1055.702255767463	120.18	0.5079	120.71	120.34	120.85	0.5321					11	9	2	0	0	0	0.79683	1	45819	45819		0	0	1	33077000			31726	14926	22954	23121	30961	30961					0.16849890812432022
LLLLRYKN	8	Unmodified	_LLLLRYKN_					0	0	0			REV__nc|ENSG00000063169|Q9NZM4-2|BICRA	REV__nc|ENSG00000063169|Q9NZM4-2|BICRA	MULTI-SECPEP	A375_MHC_IP_R1	1	517.1892700195312	2	516.831852	1031.64915	-0.67301	-0.00034783	0.036521	1.8875E-05	-0.63649	-0.00032896	516.831786545513	80.678	1.0659	80.678	80.136	81.202	0					37	20	2	0	0	0	0.86765	1	29470	29470		24.674	0	1	2796500	+		31727	16464	22955	23122	30962	30962					0.1345920299061163
LLLLTEQWKWL	11	Unmodified	_LLLLTEQWKWL_					0	0	0		ENST00000527451.1_1_11:130773148-130776010:-|nuORF;ENST00000526579.5_1_11:130748389-130775881:-|nuORF;ENST00000580193.1_1_18:14630000-14630792:-|nuORF;ENST00000444901.1_1_21:14899938-14900730:+|nuORF;ENSG00000120451|ENST00000265909|SNX19	ENST00000527451.1_1_11:130773148-130776010:-|nuORF	ENST00000527451.1_1_11:130773148-130776010:-|nuORF	MSMS	A375_MHC_IP_R1	1	481.66241455078125	3	481.618384	1441.83332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.861	1	66.861	66.361	67.361	0								0	0	0	0.16301	1	24225	24225		3.0723	0	1				31728	3664	22956	23123	30963	30963					0.13007926630666589
LLLLWLLLAY	10	Unmodified	_LLLLWLLLAY_					0	0	0		nc|ENSG00000204965|Q9Y5H7-2|PCDHA5;nc|ENSG00000204965|Q9Y5H7-3|PCDHA5;ENSG00000204965|ENST00000529859|PCDHA5	nc|ENSG00000204965|Q9Y5H7-2|PCDHA5	nc|ENSG00000204965|Q9Y5H7-2|PCDHA5	MSMS	A375_MHC_IP_R1	1	615.7255249023438	2	615.89666	1229.77877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.446	1	90.446	89.946	90.946	0								0	0	0	0.15585	1	33238	33238		1.8442	0	1				31729	9490	22957	23124	30964	30964					0.173069595499328
LLLMFEVLV	9	Unmodified	_LLLMFEVLV_					0	0	0		ENSG00000226479|ENST00000426077|TMEM185B;ENST00000517359.1_1_X:148690238-148690502:-|nuORF;ENST00000502900.2_1_X:148688442-148693021:-|nuORF;ENSG00000269556|ENST00000600449|TMEM185A	ENSG00000226479|ENST00000426077|TMEM185B	ENSG00000226479|ENST00000426077|TMEM185B	MULTI-SECPEP	A375_MHC_IP_R2	2	539.2244262695312	2	538.824846	1075.63514	-0.90329	-0.00048672	0.32587	0.00017559	-0.57742	-0.00031113	538.8248130678192	129.25	0.45471	129.49	129.31	129.77	0.23946					13	8	3	0	0	0	0.80005	1	50824	50824		4.756	0	1	5454000			31730	9705	22958	23125	30965	30965					0.10034789447308867
LLLMFHSL	8	Unmodified	_LLLMFHSL_					0	0	0		nc|ENSG00000125648|Q9BV35-4|SLC25A23;nc|ENSG00000125648|Q9BV35-2|SLC25A23;ENSG00000125648|ENST00000301454|SLC25A23;nc|ENSG00000125648|Q9BV35-3|SLC25A23	nc|ENSG00000125648|Q9BV35-4|SLC25A23	nc|ENSG00000125648|Q9BV35-4|SLC25A23	MSMS	A375_MHC_IP_R2	2	487.1995849609375	2	487.280606	972.546659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.475	1	84.214	83.714	84.714	0.73962								0	0	0	0.16876	1	31727	31727		22.453	3.1956	1				31731	3975	22959	23126	30966	30966					0.059287939275009194
LLLMLLHV	8	Unmodified	_LLLMLLHV_					0	0	0			REV__ENSG00000137842|ENST00000260403|TMEM62	REV__ENSG00000137842|ENST00000260403|TMEM62	MSMS	A375_MHC_IP_R2	2	476.7066345214844	2	476.306624	950.598695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.122	1	74.86	74.36	75.36	0.73752								0	0	0	0.16876	1	28133	28133		6.3541	0	1		+		31732	19043	22960	23127	30967	30967					0.12141957341248144
LLLNHEADV	9	Unmodified	_LLLNHEADV_					0	0	0			REV__tr|U7T4Y3|U7T4Y3_FUSNULargeribosomalsubunitproteinuL3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplCPE=3SV=1	REV__tr|U7T4Y3|U7T4Y3_FUSNULargeribosomalsubunitproteinuL3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplCPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	512.162353515625	2	512.277106	1022.53966	-0.84427	-0.0004325	0.60842	0.00031168	-0.23584	-0.00012082	512.2770676183773	50.814	0.30254	51.568	51.412	51.715	0.75406					9	5	2	0	0	0	0.49205	1	19163	19163		11.495	0	1	560560	+		31733	28809	22961	23128	30968	30968					0.029291525806115715
LLLNRAVSV	9	Unmodified	_LLLNRAVSV_					0	0	0			REV__CON__P50448	REV__CON__P50448	MULTI-SECPEP	A375_MHC_IP_R1	1	493.2132263183594	2	492.813659	983.612765	-0.40237	-0.00019829	0.080701	3.9771E-05	-0.32167	-0.00015852	492.81357198656167	76.395	0.60598	76.395	76.067	76.673	0					25	11	3	0	0	0	0.061132	1	27809	27809		77.984	0	1	6494500	+	+	31734	15866	22962	23129	30969	30969					0.12030326093895383
LLLNYGKL	8	Unmodified	_LLLNYGKL_					0	0	0			REV__ENSG00000158486|ENST00000698260|DNAH3	REV__ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	A375_MHC_IP_R1	1	933.6485595703125	1	933.57678	932.569503	0.21085	0.00019685	0.3963	0.00036998	0.60715	0.00056682	933.5768540952662	107.62	0.91661	107.62	107.34	108.26	0					22	17	2	0	0	0	0.7338	1	39630	39630		24.674	5.2349	1	1588000	+		31735	20079	22963	23130	30970	30970					0.10052136316619453
LLLPGPSAA	9	Unmodified	_LLLPGPSAA_					0	0	0		ENST00000561048.1_1_15:64452264-64455191:-|nuORF;ENSG00000166794|ENST00000300026|PPIB	ENST00000561048.1_1_15:64452264-64455191:-|nuORF	ENST00000561048.1_1_15:64452264-64455191:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	420.1551208496094	2	419.755278	837.496004	-0.075339	-3.1624E-05	0.75497	0.0003169	0.67963	0.00028528	419.7551746364905	86.553	0.85972	86.553	86.274	87.134	0					27	16	2	0	0	0	0.010934	1	31714	31714		109.63	31.645	1	3256900			31736	7111	22964	23131	30971	30971					0.07075587874123812
LLLPGPSAA	9	Unmodified	_LLLPGPSAA_					0	0	0		ENST00000561048.1_1_15:64452264-64455191:-|nuORF;ENSG00000166794|ENST00000300026|PPIB	ENST00000561048.1_1_15:64452264-64455191:-|nuORF	ENST00000561048.1_1_15:64452264-64455191:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	420.1549377441406	2	419.755278	837.496004	0.088517	3.7155E-05	0.23621	9.9151E-05	0.32473	0.00013631	419.7551015897181	85.68	0.76321	86.416	86.085	86.848	0.73601					22	14	2	0	0	0	0.0094266	1	32540	32540		97.075	29.731	1	4995800			31737	7111	22964	23131	30972	30972					0.07075587874123812
LLLPIVLAF	9	Unmodified	_LLLPIVLAF_					0	0	0			REV__ENSG00000173285|ENST00000641535|OR10K1	REV__ENSG00000173285|ENST00000641535|OR10K1	MULTI-SECPEP	A375_MHC_IP_R1	1	998.3182373046875	1	998.664867	997.65759	0.58253	0.00058175	1.8436	0.0018411	2.4261	0.0024229	998.667063180753	115.71	0.30487	115.71	115.48	115.78	0					7	5	2	0	0	0	0.81122	1	42374	42374		0	0	1	2869300	+		31738	21214	22965	23132	30973	30973					0.1586675690722359
LLLPQTGP	8	Unmodified	_LLLPQTGP_					0	0	0		nc|ENSG00000137709|Q9UKI9-3|POU2F3;ENSG00000137709|ENST00000543440|POU2F3;nc|ENSG00000137709|Q9UKI9-2|POU2F3;ENST00000533620.5_1_11:120169092-120189098:+|nuORF	nc|ENSG00000137709|Q9UKI9-3|POU2F3	nc|ENSG00000137709|Q9UKI9-3|POU2F3	MULTI-MSMS	A375_MHC_IP_R1	1	839.496826171875	1	838.503281	837.496004	-0.53472	-0.00044837	0.041119	3.4478E-05	-0.49361	-0.00041389	838.5032321816839	86.531	0.70934	86.531	86.172	86.881	0					30	13	3	0	0	0	0.72008	1	31755	31755		28.487	0	1	15991000			31739	4907	22966	23133	30974	30974					0.07075587874135181
LLLPQTGP	8	Unmodified	_LLLPQTGP_					0	0	0		nc|ENSG00000137709|Q9UKI9-3|POU2F3;ENSG00000137709|ENST00000543440|POU2F3;nc|ENSG00000137709|Q9UKI9-2|POU2F3;ENST00000533620.5_1_11:120169092-120189098:+|nuORF	nc|ENSG00000137709|Q9UKI9-3|POU2F3	nc|ENSG00000137709|Q9UKI9-3|POU2F3	MULTI-MATCH	A375_MHC_IP_R2	2		1	838.503281	837.496004	-0.55838	-0.0004682	0.039478	3.3103E-05	-0.5189	-0.0004351	838.5032225984079	85.671	0.71243	86.407	86.034	86.746	0.73602	-0.062251	-9.0854E-07	NaN	28.487	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13390000			31740	4907	22966	23133							0.07075587874135181
LLLPVQASL	9	Unmodified	_LLLPVQASL_					0	0	0		ENST00000558200.1_1_14:24608904-24610543:-|nuORF	ENST00000558200.1_1_14:24608904-24610543:-|nuORF	ENST00000558200.1_1_14:24608904-24610543:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	476.7066345214844	2	477.305136	952.595718	-0.52559	-0.00025087	0.64591	0.0003083	0.12032	5.7431E-05	477.30544811374193	73.889	0.6106	74.626	74.348	74.958	0.73752					22	11	3	0	0	0	0.59098	1	28133	28133		16.149	0	1	3969300			31741	13463	22967	23134	30975	30975					0.11752405488095974
LLLQIPRV	8	Unmodified	_LLLQIPRV_					0	0	0			REV__ENST00000454498.6_1_8:19363479-19448754:-|nuORF	REV__ENST00000454498.6_1_8:19363479-19448754:-|nuORF	MSMS	A375_MHC_IP_R2	2	476.6153869628906	2	476.32112	950.627687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.818	1	97.574	97.074	98.074	0.75586								0	0	0	0.16876	1	36753	36753		5.7604	0	1		+		31742	24920	22968	23135	30976	30976					0.1503981796190601
LLLQNFSV	8	Unmodified	_LLLQNFSV_					0	0	0		ENST00000486271.5_1_3:112732082-112732223:-|nuORF	ENST00000486271.5_1_3:112732082-112732223:-|nuORF	ENST00000486271.5_1_3:112732082-112732223:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	467.6734313964844	2	467.273835	932.533118	-0.69505	-0.00032478	-0.17724	-8.2819E-05	-0.87229	-0.0004076	467.27380049241924	106.69	0.40627	107.44	107.24	107.65	0.75977					10	7	2	0	0	0	0.72761	1	40342	40342		26.341	5.8877	1	1419600			31743	12581	22969	23136	30977	30977					0.06415259419907215
LLLQRALRRPD	11	Unmodified	_LLLQRALRRPD_					0	0	0			REV__ENSG00000157240|ENST00000287934|FZD1	REV__ENSG00000157240|ENST00000287934|FZD1	MSMS	A375_MHC_IP_R1	1	450.9470520019531	3	450.949127	1349.82555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.033	1	20.033	19.533	20.533	0								0	0	0	0.16334	1	5080	5080		1.3296	0.87513	1		+		31744	20022	22970	23137	30978	30978					0.16463212153757922
LLLQWRLPRPV	11	Unmodified	_LLLQWRLPRPV_					0	0	0			REV__ENST00000558870.1_1_15:77324662-77328157:+|nuORF	REV__ENST00000558870.1_1_15:77324662-77328157:+|nuORF	MSMS	A375_MHC_IP_R1	1	696.06396484375	2	695.937714	1389.86087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.597	1	93.597	93.097	94.097	0								0	0	0	0.16334	1	34405	34405		1.3295	0	1		+		31745	26141	22971	23138	30979	30979					0.1815387468152494
LLLRAGPL	8	Unmodified	_LLLRAGPL_					0	0	0		ENST00000608236.1_1_1:153950428-153950677:+|nuORF	ENST00000608236.1_1_1:153950428-153950677:+|nuORF	ENST00000608236.1_1_1:153950428-153950677:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	427.18670654296875	2	426.786913	851.559273	0.12384	5.2854E-05	0.31594	0.00013484	0.43978	0.00018769	426.7868618934098	69.019	0.50669	69.019	68.769	69.275	0					15	9	2	0	0	0	0.70843	1	25058	25058		32.117	0	1	1356500			31746	13927	22972	23139	30980	30980					0.12755573382037255
LLLREGTR	8	Unmodified	_LLLREGTR_					0	0	0		ENST00000300952.6_1_19:1248633-1250009:+|nuORF	ENST00000300952.6_1_19:1248633-1250009:+|nuORF	ENST00000300952.6_1_19:1248633-1250009:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	479.69561767578125	2	479.295633	956.576714	-0.73198	-0.00035083	0.47877	0.00022947	-0.25321	-0.00012136	479.2957988739116	135.77	1.5884	135.77	135.54	137.13	0					55	30	2	0	0	0	0.77717	3	52503	52305;52503;52702		5.2307	0	1	90075000			31747	10540	22973	23140	30981;30982;30983	30982					0.09668868917049167
LLLRFLGCSAG	11	Unmodified	_LLLRFLGCSAG_					0	0	0			REV__ENST00000597467.1_1_19:7701993-7703991:+|nuORF	REV__ENST00000597467.1_1_19:7701993-7703991:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	383.94378662109375	3	383.886476	1148.6376	-0.19414	-7.4528E-05	-0.46414	-0.00017818	-0.65828	-0.0002527	383.8862658210347	31.684	3.8565	32.421	30.019	33.876	0.73691					156	75	3	0	0	0	0.59391	1	10831	10831		14.838	0	1	13502000	+		31748	26481	22974	23141	30984	30984					0.06922637904972362
LLLRKCLL	8	Unmodified	_LLLRKCLL_					0	0	0		ENST00000380007.2_1_5:94956482-94957517:+|nuORF	ENST00000380007.2_1_5:94956482-94957517:+|nuORF	ENST00000380007.2_1_5:94956482-94957517:+|nuORF	MSMS	A375_MHC_IP_R1	1	486.6209716796875	2	486.325348	970.636143	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.574	1	49.574	49.074	50.074	0								0	0	0	0.16876	1	17536	17536		6.3541	0	1				31749	11345	22975	23142	30985	30985					0.14965048606859455
LLLRLFMPL	9	Unmodified	_LLLRLFMPL_					0	0	0			REV__ENST00000415177.6_1_6:135318627-135323914:-|nuORF	REV__ENST00000415177.6_1_6:135318627-135323914:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	372.9716491699219	3	372.571829	1114.69366	0.1673	6.233E-05	-0.38994	-0.00014528	-0.22264	-8.295E-05	372.5716617014643	24.23	0.25327	24.873	24.705	24.958	0.64368					9	4	3	0	0	0	0.7235	1	7944	7944		4.897	4.897	1	4342300	+		31750	24516	22976	23143	30986	30986					0.14089890812442718
LLLRQIQREP	10	Unmodified	_LLLRQIQREP_					0	0	0		ENSG00000134815|ENST00000328771|DHX34	ENSG00000134815|ENST00000328771|DHX34	ENSG00000134815|ENST00000328771|DHX34	MULTI-MSMS	A375_MHC_IP_R1	1	422.9940490722656	3	422.594461	1264.76155	-0.36574	-0.00015456	-0.61957	-0.00026183	-0.98531	-0.00041639	422.5940612745298	139.82	0.56213	139.82	139.67	140.23	0					12	10	2	0	0	0	0.72574	1	53739	53739		0.77653	0.078866	1	1597700			31751	4612	22977	23144	30987	30987					0.13976431996798055
LLLRQIQREP	10	Unmodified	_LLLRQIQREP_					0	0	0		ENSG00000134815|ENST00000328771|DHX34	ENSG00000134815|ENST00000328771|DHX34	ENSG00000134815|ENST00000328771|DHX34	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	422.594461	1264.76155	0.061059	2.5803E-05	-1.3841	-0.00058491	-1.323	-0.00055911	422.59376118669496	139.82	0.56464	139.88	139.7	140.26	0.059906	0.029462	-0.00049244	NaN	0.77653	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2369100			31752	4612	22977	23144							0.13976431996798055
LLLRRRRRSGY	11	Unmodified	_LLLRRRRRSGY_					0	0	0		ENST00000431489.5_1_2:62933068-62933182:+|nuORF	ENST00000431489.5_1_2:62933068-62933182:+|nuORF	ENST00000431489.5_1_2:62933068-62933182:+|nuORF	MSMS	A375_MHC_IP_R1	1	482.6868591308594	3	482.635654	1444.88513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.72	1	141.72	141.22	142.22	0								0	0	0	0.16352	1	54389	54389		0.40827	0	1				31753	11871	22978	23145	30988	30988					0.180485278877768
LLLRRRRRSGY	11	Unmodified	_LLLRRRRRSGY_					0	0	0		ENST00000431489.5_1_2:62933068-62933182:+|nuORF	ENST00000431489.5_1_2:62933068-62933182:+|nuORF	ENST00000431489.5_1_2:62933068-62933182:+|nuORF	MSMS	A375_MHC_IP_R1	1	482.6871643066406	3	482.635654	1444.88513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.02	1	142.02	141.52	142.52	0								0	0	0	0.16352	1	54497	54497		0.40827	0.24894	1				31754	11871	22978	23145	30989	30989					0.180485278877768
LLLRWRPMRRW	11	Unmodified	_LLLRWRPMRRW_					0	0	0			REV__REN|p.G11R|1|0.16|ENSG00000143839|chr1:204166263-204166263|C/T|missense_variant	REV__REN|p.G11R|1|0.16|ENSG00000143839|chr1:204166263-204166263|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	791.9661254882812	2	791.966814	1581.91908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.228	1	67.965	67.465	68.465	0.73631								0	0	0	0.1636	1	25467	25467		0	0	1		+		31755	27880	22979	23146	30990	30990					0.15139233055151635
LLLSEAWYH	9	Unmodified	_LLLSEAWYH_					0	0	0			REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	565.7527465820312	2	566.295299	1130.57605	0.082145	4.6518E-05	-0.41049	-0.00023246	-0.32835	-0.00018594	566.2946151384077	126.89	0.6068	126.89	126.76	127.37	0					19	11	3	0	0	0	0.74651	1	48753	48753		13.508	7.776	1	10394000	+		31756	26007	22980	23147	30991	30991					0.01598029477304408
LLLSEAWYH	9	Unmodified	_LLLSEAWYH_					0	0	0			REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	566.295299	1130.57605	-0.38338	-0.00021711	-0.83317	-0.00047182	-1.2166	-0.00068893	566.2946991200159	126.51	0.55516	126.81	126.68	127.24	0.2951	-0.042312	-0.00028811	NaN	13.508	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20361000	+		31757	26007	22980	23147							0.01598029477304408
LLLSLLLRQ	9	Unmodified	_LLLSLLLRQ_					0	0	0			REV__nc|ENSG00000251664|Q9UN75-2|PCDHA12	REV__nc|ENSG00000251664|Q9UN75-2|PCDHA12	MULTI-SECPEP	A375_MHC_IP_R2	2	1068.4439697265625	1	1068.71394	1067.70667	0.19252	0.00020575	0.8886	0.00094966	1.0811	0.0011554	1068.715712164766	117.49	1.3679	118.15	117.53	118.9	0.65962					45	26	2	0	0	0	0.80005	1	44565	44565		0.52476	0.52476	1	153260000	+		31758	22847	22981	23148	30992	30992					0.17552045196180188
LLLSNVFMSC	10	Unmodified	_LLLSNVFMSC_					0	0	0			REV__ENST00000436347.5_1_2:190313199-190340140:+|nuORF	REV__ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	564.184814453125	2	563.785395	1125.55624	-0.5147	-0.00029018	-0.68527	-0.00038634	-1.2	-0.00067652	563.7851913180255	82.679	1.062	83.422	83.093	84.155	0.74293					43	20	3	0	0	0	0.66275	1	31390	31390		36.506	2.1045	1	12234000	+		31759	17880	22982	23149	30993	30993					-0.0015180584928202734
LLLSRIKKL	9	Unmodified	_LLLSRIKKL_					0	0	0			REV__nc|ENSG00000074054|Q7Z460-2|CLASP1	REV__nc|ENSG00000074054|Q7Z460-2|CLASP1	MSMS	A375_MHC_IP_R2	2	542.5197143554688	2	542.384251	1082.75395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.345	1	85.082	84.582	85.582	0.73698								0	0	0	0.15486	1	32061	32061		2.0598	0	1		+		31760	16630	22983	23150	30994	30994					0.21588324467188613
LLLVGAVFSI	10	Unmodified	_LLLVGAVFSI_					0	0	0			REV__nc|ENSG00000136111|O60343-3|TBC1D4	REV__nc|ENSG00000136111|O60343-3|TBC1D4	MULTI-MSMS	A375_MHC_IP_R2	2	516.728271484375	2	516.328611	1030.64267	-0.67098	-0.00034644	0.15119	7.8064E-05	-0.51979	-0.00026838	516.3285989961402	89.891	0.56292	90.623	90.339	90.902	0.7318					25	10	3	0	0	0	0.23156	1	34200	34200		46.021	0	1	4644200	+		31761	27243	22984	23151	30995	30995					0.1285726503922433
LLLVGAVFSI	10	Unmodified	_LLLVGAVFSI_					0	0	0			REV__nc|ENSG00000136111|O60343-3|TBC1D4	REV__nc|ENSG00000136111|O60343-3|TBC1D4	MULTI-SECPEP	A375_MHC_IP_R2	2	516.132080078125	2	516.328611	1030.64267	-0.67098	-0.00034644	0.15119	7.8064E-05	-0.51979	-0.00026838	516.3285989961402	89.891	0.56292	90.623	90.339	90.902	0.7318					25	10	3	0	0	0	0.32951	1	34248	34248		37.974	0	1	4644200	+		31762	27243	22984	23151	30996	30996					0.1285726503922433
LLLVLFRLLEP	11	Unmodified	_LLLVLFRLLEP_					0	0	0		ENSG00000124574|ENST00000372530|ABCC10;nc|ENSG00000124574|Q5T3U5-2|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	MSMS	A375_MHC_IP_R2	2	663.0894165039062	2	663.431399	1324.84824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.214	1	93.953	93.453	94.453	0.73902								0	0	0	0.1624	1	35439	35439		6.2058	2.2614	1				31763	3916	22985	23152	30997	30997					0.19881418498675885
LLLWDLQV	8	Unmodified	_LLLWDLQV_					0	0	0		ENST00000474541.1_1_1:247241930-247242071:-|nuORF	ENST00000474541.1_1_1:247241930-247242071:-|nuORF	ENST00000474541.1_1_1:247241930-247242071:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	500.4751281738281	2	500.29731	998.580068	-0.48887	-0.00024458	-0.64023	-0.00032031	-1.1291	-0.00056489	500.2970716462665	89.619	0.55965	90.351	89.985	90.545	0.7318					21	10	3	0	0	0	0.90224	1	34166	34166		4.756	0	1	1196100			31764	12407	22986	23153	30998	30998					0.08072118971051623
LLLWFQFLPA	10	Unmodified	_LLLWFQFLPA_					0	0	0			REV__ENST00000354416.7_1_X:118753384-118753732:-|nuORF	REV__ENST00000354416.7_1_X:118753384-118753732:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	416.9781799316406	3	416.577749	1246.71142	-0.039116	-1.6295E-05	3.1325	0.0013049	3.0933	0.0012886	416.5782523111317	135.06	0.61037	135.06	134.73	135.34	0					21	11	4	0	0	0	0.7178	1	52102	52102		2.086	0	1	3767600	+		31765	23811	22987	23154	30999	30999					0.09792929338959766
LLLWFQFLPA	10	Unmodified	_LLLWFQFLPA_					0	0	0			REV__ENST00000354416.7_1_X:118753384-118753732:-|nuORF	REV__ENST00000354416.7_1_X:118753384-118753732:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	416.577749	1246.71142	-0.039116	-1.6295E-05	3.1325	0.0013049	3.0933	0.0012886	416.5782523111317	135.06	0.61037	135.06	134.73	135.34	0	-0.026317	0.00022372	NaN	2.086	21	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3767600	+		31766	23811	22987	23154							0.09792929338959766
LLLWFQFLPA	10	Unmodified	_LLLWFQFLPA_					0	0	0			REV__ENST00000354416.7_1_X:118753384-118753732:-|nuORF	REV__ENST00000354416.7_1_X:118753384-118753732:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	416.577749	1246.71142	0.087101	3.6284E-05	2.8313	0.0011794	2.9184	0.0012157	416.57829548974235	134.97	0.65982	135.11	134.85	135.51	0.13901	0.026317	-0.00015267	NaN	2.086	22	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3240000	+		31767	23811	22987	23154							0.09792929338959766
LLLWTPLPM	9	Unmodified	_LLLWTPLPM_					0	0	0		ENSG00000198888|ENST00000361390|MT-ND1	ENSG00000198888|ENST00000361390|MT-ND1	ENSG00000198888|ENST00000361390|MT-ND1	MULTI-SECPEP	A375_MHC_IP_R1	1	1084.097412109375	1	1083.6271	1082.61982	0.54855	0.00059443	3.6108	0.0039128	4.1594	0.0045072	1083.6317173394161	114.97	0.40117	114.97	114.77	115.17	0					9	7	2	0	0	0	0.75466	1	42147	42147		7.9102	0	1	2395100			31768	9361	22988	23155	31000	31000					0.08181922650101114
LLLYILKVL	9	Unmodified	_LLLYILKVL_					0	0	0		ENSG00000185448|ENST00000346193|FAM47A	ENSG00000185448|ENST00000346193|FAM47A	ENSG00000185448|ENST00000346193|FAM47A	MSMS	A375_MHC_IP_R2	2	363.2452087402344	3	363.254494	1086.74165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.124	1	33.876	33.376	34.376	0.75225								0	0	0	0.15486	1	11841	11841		0.26902	0	1				31769	8667	22989	23156	31001	31001					0.20175288004134018
LLLYKKLDREV	11	Unmodified	_LLLYKKLDREV_					0	0	0		PCDHB5|p.E88K|2|0.36|ENSG00000113209|chr5:141135696-141135696|G/A|missense_variant	PCDHB5|p.E88K|2|0.36|ENSG00000113209|chr5:141135696-141135696|G/A|missense_variant	PCDHB5|p.E88K|2|0.36|ENSG00000113209|chr5:141135696-141135696|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	464.353271484375	3	463.953655	1388.83914	-0.18367	-8.5216E-05	-0.13318	-6.1788E-05	-0.31685	-0.000147	463.9536148969804	63.452	0.6652	63.452	63.121	63.786	0					24	12	3	0	0	0	0.72585	1	22907	22907		12.856	0	1	5507100			31770	15135	22990	23157	31002	31002					0.160270251422844
LLLYKLNRLH	10	Unmodified	_LLLYKLNRLH_					0	0	0			REV__ENSG00000125375|ENST00000557421|DMAC2L	REV__ENSG00000125375|ENST00000557421|DMAC2L	MSMS	A375_MHC_IP_R1	1	641.6426391601562	2	641.90334	1281.79213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.134	1	99.134	98.634	99.634	0								0	0	0	0.15417	1	36418	36418		7.2892	1.0834	1		+		31771	18337	22991	23158	31003	31003					0.16250210381849683
LLMCFSPW	8	Unmodified	_LLMCFSPW_					0	0	0		ENST00000599417.1_1_19:39888611-39888992:+|nuORF	ENST00000599417.1_1_19:39888611-39888992:+|nuORF	ENST00000599417.1_1_19:39888611-39888992:+|nuORF	MSMS	A375_MHC_IP_R1	1	498.6971130371094	2	498.737717	995.460881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.654	1	78.654	78.154	79.154	0								0	0	0	0.16876	1	28703	28703		11.114	0	1				31772	13858	22992	23159	31004	31004					-0.037031142496743996
LLMECGSCMA	10	Unmodified	_LLMECGSCMA_					0	0	0			REV__ENSG00000253598|ENST00000518568|SLC10A5	REV__ENSG00000253598|ENST00000518568|SLC10A5	MULTI-MSMS	A375_MHC_IP_R1	1	529.22412109375	2	529.212891	1056.41123	-0.42306	-0.00022389	-2.1152	-0.0011194	-2.5382	-0.0013433	529.2122540776816	88.812	0.66032	88.812	88.51	89.171	0					19	12	2	0	0	0	0.58828	1	32631	32631		21.747	0.87544	1	1835000	+		31773	22855	22993	23160	31005	31005					-0.1147193331228209
LLMGEMHMV	9	2 Oxidation (M)	_LLM(Oxidation (M))GEM(Oxidation (M))HMV_		LLM(0.998)GEM(0.992)HM(0.01)V		LLM(27)GEM(21)HM(-21)V	0	0	2		ENST00000491243.5_1_X:48367421-48370328:+|nuORF;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-3|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENSG00000102312|ENST00000326194|PORCN	ENST00000491243.5_1_X:48367421-48370328:+|nuORF	ENST00000491243.5_1_X:48367421-48370328:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	547.148193359375	2	546.747956	1091.48136	-0.45962	-0.0002513	0.68966	0.00037707	0.23004	0.00012577	546.7483570840294	104.99	0.76106	104.99	104.59	105.35	0					25	14	2	0	0	0	0.16661	1	38524	38524		40.449	10.224	3	2866700			31774	2371	22994	23161	31006	31006		101;102			-0.060723116521785414
LLMHLPPEV	9	Unmodified	_LLMHLPPEV_					0	0	0		ENST00000529132.1_1_11:67173299-67173527:+|nuORF	ENST00000529132.1_1_11:67173299-67173527:+|nuORF	ENST00000529132.1_1_11:67173299-67173527:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	525.697265625	2	524.79662	1047.57869	-0.32489	-0.0001705	1.6794	0.00088135	1.3545	0.00071085	525.2978461575943	115.93	0.5588	116.62	116.29	116.85	0.68999					25	10	3	0	0	0	0.2264	1	43757	43757		36.044	15.591	1	16768000			31775	13125	22995	23162	31007	31007					0.05680161610621326
LLMIYVKKRDY	11	Unmodified	_LLMIYVKKRDY_					0	0	0			REV__tr|U7SVE8|U7SVE8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01232PE=4SV=1	REV__tr|U7SVE8|U7SVE8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01232PE=4SV=1	MSMS	A375_MHC_IP_R2	2	721.6229248046875	2	721.415423	1440.81629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.33	1	108.08	107.58	108.58	0.75436								0	0	0	0.16302	1	40549	40549		2.9952	1.5133	1		+		31776	28592	22996	23163	31008	31008					0.1135168275320666
LLMKRKFE	8	Unmodified	_LLMKRKFE_					0	0	0		nc|ENSG00000160746|Q9NW15-5|ANO10;ENSG00000160746|ENST00000292246|ANO10;nc|ENSG00000160746|Q9NW15-3|ANO10;nc|ENSG00000160746|Q9NW15-4|ANO10	nc|ENSG00000160746|Q9NW15-5|ANO10	nc|ENSG00000160746|Q9NW15-5|ANO10	MSMS	A375_MHC_IP_R1	1	355.4598388671875	3	355.547684	1063.62122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.087	1	44.087	43.587	44.587	0								0	0	0	0.16876	1	15366	15366		1.6526	0	1				31777	6438	22997	23164	31009	31009					0.0919555673888226
LLMLFFIF	8	Unmodified	_LLMLFFIF_					0	0	0			REV__ENST00000598221.1_1_19:49796478-49828345:-|nuORF	REV__ENST00000598221.1_1_19:49796478-49828345:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	521.6314697265625	2	522.30355	1042.59255	-0.41915	-0.00021892	-0.90153	-0.00047087	-1.3207	-0.00068979	522.804610783881	86.126	0.66373	86.859	86.642	87.306	0.733					15	12	2	0	0	0	0.90851	1	32881	32881		11.114	0	1	1068200	+		31778	16463	22998	23165	31010	31010					0.07295439109725521
LLMLRVLRFQV	11	Unmodified	_LLMLRVLRFQV_					0	0	0		ENST00000435741.1_1_Y:28772724-28773147:-|nuORF;ENST00000428076.1_1_13:19956755-19957193:+|nuORF;nc|ENSG00000262919|Q8N1B3-2|CCNQ;ENSG00000262919|ENST00000576892|CCNQ	ENST00000435741.1_1_Y:28772724-28773147:-|nuORF	ENST00000435741.1_1_Y:28772724-28773147:-|nuORF	MSMS	A375_MHC_IP_R2	2	694.5723876953125	2	694.43395	1386.85335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.486	1	94.231	93.731	94.731	0.74474								0	0	0	0.1629	1	35540	35540		3.5965	0	1				31779	9950	22999	23166	31011	31011					0.17539399089605467
LLMMFAVHC	9	Unmodified	_LLMMFAVHC_					0	0	0		ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	MSMS	A375_MHC_IP_R2	2	532.7046508789062	2	532.758126	1063.5017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.719	1	73.455	72.955	73.955	0.73541								0	0	0	0.15486	1	27600	27600		9.3474	1.4373	1				31780	6678	23000	23167	31012	31012					-0.027510962017004204
LLMMKKLL	8	Unmodified	_LLMMKKLL_					0	0	0		ENST00000366512.7_3_1:246784793-246784823:+|nuORF	ENST00000366512.7_3_1:246784793-246784823:+|nuORF	ENST00000366512.7_3_1:246784793-246784823:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	495.68707275390625	2	495.316134	988.617716	-0.49625	-0.0002458	-0.12501	-6.1919E-05	-0.62126	-0.00030772	495.31600472531	64.928	0.35563	65.666	65.461	65.817	0.73811					11	6	2	0	0	0	0.972	1	24546	24546		2.8892	0	1	912200			31781	11058	23001	23168	31013	31013					0.12295170640663855
LLMPFILKL	9	Unmodified	_LLMPFILKL_					0	0	0		ENST00000500813.6_1_4:183812458-183812524:-|nuORF	ENST00000500813.6_1_4:183812458-183812524:-|nuORF	ENST00000500813.6_1_4:183812458-183812524:-|nuORF	MSMS	A375_MHC_IP_R2	2	544.3658447265625	2	544.351031	1086.68751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.77	1	96.52	96.02	97.02	0.75045								0	0	0	0.15486	1	36374	36374		8.5933	0	1				31782	12779	23002	23169	31014	31014					0.14763372580910072
LLMRLREW	8	Unmodified	_LLMRLREW_					0	0	0			REV__nc|ENSG00000070182|P11277-3|SPTB	REV__nc|ENSG00000070182|P11277-3|SPTB	MULTI-SECPEP	A375_MHC_IP_R1	1	372.6497497558594	3	372.883066	1115.62737	0.1957	7.2974E-05	-0.87971	-0.00032803	-0.684	-0.00025505	372.8826035710901	46.69	0.66258	46.69	46.444	47.107	0					18	12	2	0	0	0	0.972	1	16299	16299		3.5965	1.098	1	1524500	+		31783	16568	23003	23170	31015	31015					0.07418074970382804
LLMRSRRDY	9	Unmodified	_LLMRSRRDY_					0	0	0		nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1	MULTI-MSMS	A375_MHC_IP_R1	1	605.2517700195312	2	605.329682	1208.64481	-0.54681	-0.000331	-0.47086	-0.00028503	-1.0177	-0.00061603	605.3293805232545	85.437	0.5583	85.437	85.159	85.717	0					19	10	2	0	0	0	0.68705	1	31370	31370		12.532	6.3258	1	3710200			31784	14500	23004	23171	31016	31016					0.04883370505399398
LLMRSRRDY	9	Unmodified	_LLMRSRRDY_					0	0	0		nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	605.329682	1208.64481	-0.54681	-0.000331	-0.47086	-0.00028503	-1.0177	-0.00061603	605.3293805232545	85.437	0.5583	85.437	85.159	85.717	0	0.11067	0.00012581	NaN	12.532	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3710200			31785	14500	23004	23171							0.04883370505399398
LLMRSRRDY	9	Unmodified	_LLMRSRRDY_					0	0	0		nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	605.329682	1208.64481	-0.32226	-0.00019508	-0.6651	-0.0004026	-0.98736	-0.00059768	605.3291350166933	84.479	0.65796	85.215	84.968	85.626	0.73602	-0.11067	-0.00010935	NaN	12.532	34	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3659000			31786	14500	23004	23171							0.04883370505399398
LLMWWQIF	8	Unmodified	_LLMWWQIF_					0	0	0			REV__SLC6A19|p.S192F|1|0.06|ENSG00000174358|chr5:1212396-1212396|C/T|missense_variant	REV__SLC6A19|p.S192F|1|0.06|ENSG00000174358|chr5:1212396-1212396|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	569.199951171875	2	568.801706	1135.58886	-0.28479	-0.00016199	-1.1313	-0.00064347	-1.4161	-0.00080546	568.8009041330298	63.491	0.45967	63.491	63.173	63.632	0					15	8	2	0	0	0	0.64599	1	22994	22994		42.968	15.339	1	1228000	+		31787	28002	23005	23172	31017	31017					0.02648769335837642
LLMYSILNH	9	Unmodified	_LLMYSILNH_					0	0	0			REV__nc|ENSG00000110514|Q8WXG6-6|MADD	REV__nc|ENSG00000110514|Q8WXG6-6|MADD	MULTI-SECPEP	A375_MHC_IP_R2	2	368.2488708496094	3	368.535444	1102.5845	-0.051893	-1.9125E-05	1.4244	0.00052494	1.3725	0.00050582	368.5360764898288	23.728	0.30498	24.358	24.079	24.384	0.63014					8	5	2	0	0	0	0.65246	1	7667	7667		15.248	3.0737	1	1486800	+		31788	17631	23006	23173	31018	31018					0.037312601223220554
LLNAILHSA	9	Unmodified	_LLNAILHSA_					0	0	0		ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	A375_MHC_IP_R1	1	476.6844482421875	2	476.284734	950.554916	-0.35783	-0.00017043	0.23599	0.0001124	-0.12184	-5.803E-05	476.2848526506015	71.424	0.50391	71.424	71.211	71.715	0					13	9	2	0	0	0	0.040308	1	25966	25966		68.081	13.307	1	3302800			31789	4293	23007	23174	31019	31019					0.07766064168470166
LLNAILHSA	9	Unmodified	_LLNAILHSA_					0	0	0		ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	A375_MHC_IP_R2	2	476.6843566894531	2	476.284734	950.554916	-0.49628	-0.00023637	0.21159	0.00010078	-0.28469	-0.00013559	476.2848207251429	70.507	0.70986	71.241	70.743	71.453	0.73421					21	13	3	0	0	0	0.064406	1	26710	26710		58.679	3.9053	1	3729300			31790	4293	23007	23174	31020	31020					0.07766064168470166
LLNDNQWHYVR	11	Unmodified	_LLNDNQWHYVR_					0	0	0		nc|ENSG00000155052|Q8WYK1|CNTNAP5;ENSG00000155052|ENST00000682447|CNTNAP5	nc|ENSG00000155052|Q8WYK1|CNTNAP5	nc|ENSG00000155052|Q8WYK1|CNTNAP5	MULTI-SECPEP	A375_MHC_IP_R1	1	487.3151550292969	3	486.580992	1456.72115	-0.64376	-0.00031324	-0.16116	-7.8415E-05	-0.80491	-0.00039166	486.58082129572887	41.474	0.4078	41.474	41.266	41.674	0					13	7	2	0	0	0	0.99916	1	14339	14339		1.1098	0.65524	1	5401400			31791	6121	23008	23175	31021	31021					0.011054656063606672
LLNDRIWLA	9	Unmodified	_LLNDRIWLA_					0	0	0		ZSWIM1|p.R244C|1|0.27|ENSG00000168612|chr20:45883322-45883322|C/T|missense_variant;ENSG00000168612|ENST00000372523|ZSWIM1	ZSWIM1|p.R244C|1|0.27|ENSG00000168612|chr20:45883322-45883322|C/T|missense_variant	ZSWIM1|p.R244C|1|0.27|ENSG00000168612|chr20:45883322-45883322|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	557.7238159179688	2	557.324391	1112.63423	-0.47441	-0.0002644	0.2032	0.00011325	-0.2712	-0.00015115	557.3244302038843	97.87	0.65979	97.87	97.59	98.25	0					15	12	2	0	0	0	0.63622	1	35988	35988		19.362	2.4196	1	2326100			31792	7326	23009	23176	31022	31022					0.08241711122627748
LLNEIIKELK	10	Unmodified	_LLNEIIKELK_					0	0	0			REV__tr|U7T770|U7T770_FUSNUUPF0122proteinHMPREF1766_00136OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00136PE=3SV=1	REV__tr|U7T770|U7T770_FUSNUUPF0122proteinHMPREF1766_00136OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00136PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	405.3236389160156	3	404.923585	1211.74892	-0.47396	-0.00019192	0.63253	0.00025612	0.15857	6.4207E-05	404.923800872056	76.134	0.60645	76.134	75.915	76.522	0					18	11	2	0	0	0	0.64407	1	27763	27763		17.572	3.4012	1	1357200	+		31793	28880	23010	23177	31023	31023					0.15151975813887475
LLNENFRREYW	11	Unmodified	_LLNENFRREYW_					0	0	0		ENSG00000102195|ENST00000218316|GPR50	ENSG00000102195|ENST00000218316|GPR50	ENSG00000102195|ENST00000218316|GPR50	MULTI-SECPEP	A375_MHC_IP_R2	2	770.78759765625	2	770.388782	1538.76301	-0.84425	-0.0006504	-0.8448	-0.00065082	-1.689	-0.0013012	770.3878486949515	133.82	0.20541	133.98	133.85	134.06	0.16487					7	3	3	0	0	0	0.99955	1	52674	52674		2.9952	2.7262	1	3851900			31794	2363	23011	23178	31024	31024					0.015180212949189809
LLNETRRF	8	Unmodified	_LLNETRRF_					0	0	0		tr|U7T897|U7T897_FUSNUArsenite-transportingATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00167PE=3SV=1	tr|U7T897|U7T897_FUSNUArsenite-transportingATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00167PE=3SV=1	tr|U7T897|U7T897_FUSNUArsenite-transportingATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00167PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	525.697509765625	2	524.79854	1047.58253	-0.32489	-0.0001705	-1.979	-0.0010386	-2.3039	-0.0012091	525.2978461575943	115.93	0.5588	116.62	116.29	116.85	0.68999					25	10	3	0	0	0	0.73946	1	43729	43729		23.148	2.6948	1	16768000			31795	30060	23012	23179	31025	31025					0.06063967428713113
LLNFYNMP	8	Unmodified	_LLNFYNMP_					0	0	0		nc|ENSG00000134376|P82279-5|CRB1;nc|ENSG00000134376|P82279-4|CRB1;nc|ENSG00000134376|P82279-3|CRB1;nc|ENSG00000134376|P82279-2|CRB1;ENSG00000134376|ENST00000367400|CRB1	nc|ENSG00000134376|P82279-5|CRB1	nc|ENSG00000134376|P82279-5|CRB1	MULTI-MSMS	A375_MHC_IP_R2	2	506.65203857421875	2	506.252046	1010.48954	-0.69901	-0.00035388	0.79817	0.00040407	0.099157	5.0198E-05	506.2523695494083	62.947	0.50406	63.69	63.383	63.888	0.74263					15	9	2	0	0	0	0.77488	1	23890	23890		13.508	0	1	1747800			31796	4571	23013	23180	31026	31026					-0.015286733488892423
LLNKDLKPQT	10	Unmodified	_LLNKDLKPQT_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6;ENST00000504674.1_1_5:39719945-39720791:-|nuORF;nc|ENSG00000165359|Q5JSJ4|INTS6L;ENSG00000165359|ENST00000639893|INTS6L	nc|ENSG00000102786|Q9UL03-3|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	MULTI-MSMS	A375_MHC_IP_R2	2	586.2489624023438	2	585.348063	1168.68157	-0.30761	-0.00018006	-0.16854	-9.8653E-05	-0.47615	-0.00027871	585.3477794106075	145.12	0.68983	145.14	144.84	145.53	0.021408					70	41	2	0	0	0	0.72416	1	56631	56631		1.4819	0	1	742590			31797	2393	23014	23181	31027	31027					0.10397945602926484
LLNKENSK	8	Unmodified	_LLNKENSK_					0	0	0		tr|U7SUC2|U7SUC2_FUSNURelB/DinJfamilyaddictionmoduleantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01099PE=3SV=1	tr|U7SUC2|U7SUC2_FUSNURelB/DinJfamilyaddictionmoduleantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01099PE=3SV=1	tr|U7SUC2|U7SUC2_FUSNURelB/DinJfamilyaddictionmoduleantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01099PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	472.67669677734375	2	473.271824	944.529095	-0.25196	-0.00011924	1.7132	0.00081082	1.4613	0.00069157	473.2725139995798	106.8	0.76675	106.8	106.37	107.14	0					20	14	2	0	0	0	0.93661	1	39150	39150		21.747	0	1	1323100			31798	29755	23015	23182	31028	31028					0.05461169926184084
LLNKSIFVK	9	Unmodified	_LLNKSIFVK_					0	0	0			REV__ENST00000282032.3_1_11:30358358-30358400:+|nuORF	REV__ENST00000282032.3_1_11:30358358-30358400:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	354.6109619140625	3	354.562099	1060.66447	-0.076411	-2.7092E-05	-0.23137	-8.2036E-05	-0.30778	-0.00010913	354.56200239038765	46.523	0.86468	47.288	47.058	47.923	0.76519					33	16	3	0	0	0	0.65721	1	17559	17559		7.1017	0.47135	1	29149000	+		31799	23323	23016	23183	31029	31029					0.13656069787793967
LLNPPHLTF	9	Unmodified	_LLNPPHLTF_					0	0	0			REV__nc|ENSG00000162006|Q96KJ4|MSLNL	REV__nc|ENSG00000162006|Q96KJ4|MSLNL	MSMS	A375_MHC_IP_R2	2	526.34765625	2	526.300384	1050.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.662	1	76.403	75.903	76.903	0.74052								0	0	0	0.1499	1	28722	28722		21.747	2.3076	1		+		31800	20229	23017	23184	31030	31030					0.06294637202563536
LLNQAALITN	10	Unmodified	_LLNQAALITN_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;nc|ENSG00000125755|Q92797-2|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	A375_MHC_IP_R1	1	1071.1165771484375	1	1070.62044	1069.61316	0.23765	0.00025443	1.4964	0.0016021	1.734	0.0018565	1071.623689553879	118.42	3.0448	118.42	116.09	119.13	0					97	54	3	0	0	0	0.88918	1	42596	42596		13.042	2.2185	1	189880000			31801	3986	23018	23185	31031	31031					0.08113701023080466
LLNREEVTL	9	Unmodified	_LLNREEVTL_					0	0	0			REV__ENST00000486241.1_1_17:1265194-1303470:-|nuORF	REV__ENST00000486241.1_1_17:1265194-1303470:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	544.2106323242188	2	543.811313	1085.60807	-0.71132	-0.00038683	-0.37124	-0.00020189	-1.0826	-0.00058871	543.810952844046	79.247	0.75922	79.992	79.54	80.299	0.74474					29	14	3	0	0	0	0.13064	1	30105	30105		47.749	0	1	11177000	+		31802	17565	23019	23186	31032	31032					0.06869397160471635
LLNSLLDTV	9	Unmodified	_LLNSLLDTV_					0	0	0		nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-4|PLTP;nc|ENSG00000100979|P55058-2|PLTP;ENSG00000100979|ENST00000372431|PLTP	nc|ENSG00000100979|P55058-3|PLTP	nc|ENSG00000100979|P55058-3|PLTP	MULTI-SECPEP	A375_MHC_IP_R2	2	494.17926025390625	2	494.289682	986.564812	-0.65166	-0.00032211	0.52818	0.00026108	-0.12348	-6.1035E-05	494.29000220521016	66.221	0.51064	66.959	66.731	67.241	0.73811					13	9	2	0	0	0	0.28216	1	25179	25179		41.84	0	1	1172300			31803	2237	23020	23187	31033	31033					0.07099207383180328
LLNTGTKILV	10	Unmodified	_LLNTGTKILV_					0	0	0		tr|U7SVS6|U7SVS6_FUSNUNADARdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01324PE=4SV=1	tr|U7SVS6|U7SVS6_FUSNUNADARdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01324PE=4SV=1	tr|U7SVS6|U7SVS6_FUSNUNADARdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01324PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	357.91357421875	3	357.897258	1070.66995	0.39692	0.00014205	-0.43224	-0.0001547	-0.035323	-1.2642E-05	357.8970670989343	22.242	2.5874	22.242	21.048	23.635	0					129	50	4	0	0	0	0.44241	1	6074	6074		31.636	1.2043	1	104940000			31804	29796	23021	23188	31034	31034					0.1374374857962266
LLNVATQGV	9	Unmodified	_LLNVATQGV_					0	0	0		nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26;ENSG00000162923|ENST00000414423|WDR26;ENST00000486652.5_1_1:224577539-224589708:-|nuORF;ENST00000479727.1_1_1:224585697-224586694:-|nuORF	nc|ENSG00000162923|Q9H7D7-2|WDR26	nc|ENSG00000162923|Q9H7D7-2|WDR26	MSMS	A375_MHC_IP_R1	1	457.6237487792969	2	457.768917	913.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.73	1	71.73	71.23	72.23	0								0	0	0	0.1535	1	26075	26075		15.847	4.2069	1				31805	6613	23022	23189	31035	31035					0.06306071414530834
LLNVLLTPV	9	Unmodified	_LLNVLLTPV_					0	0	0			REV__ENSG00000171133|ENST00000302681|OR2K2	REV__ENSG00000171133|ENST00000302681|OR2K2	MULTI-SECPEP	A375_MHC_IP_R2	2	491.720458984375	2	491.320786	980.627018	-0.47604	-0.00023389	0.17264	8.482E-05	-0.3034	-0.00014907	491.3208705572785	73.466	0.45789	74.201	73.938	74.396	0.73541					15	8	2	0	0	0	0.39388	1	27879	27879		32.305	0	1	3374400	+		31806	21046	23023	23190	31036	31036					0.1359297852218333
LLPAPMLKGPL	11	Unmodified	_LLPAPMLKGPL_					0	0	0			REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	383.9491271972656	3	383.906989	1148.69914	-0.093352	-3.5838E-05	-1.6041	-0.00061582	-1.6974	-0.00065166	383.9071458541366	64.751	0.25392	65.489	65.308	65.562	0.73811					6	4	2	0	0	0	0.73636	1	24522	24522		2.8433	0.10809	1	507490	+		31807	17443	23024	23191	31037	31037					0.13073569604262048
LLPCEMEA	8	Unmodified	_LLPCEMEA_					0	0	0		ENST00000392547.6_1_2:175426077-175426254:-|nuORF	ENST00000392547.6_1_2:175426077-175426254:-|nuORF	ENST00000392547.6_1_2:175426077-175426254:-|nuORF	MSMS	A375_MHC_IP_R2	2	453.1516418457031	2	453.208989	904.403426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.19	1	78.933	78.433	79.433	0.74293								0	0	0	0.16876	1	29692	29692		6.3541	0	1				31808	11421	23025	23192	31038	31038					-0.05260001245915191
LLPCHWPV	8	Unmodified	_LLPCHWPV_					0	0	0			REV__ENSG00000140832|ENST00000268485|MARVELD3	REV__ENSG00000140832|ENST00000268485|MARVELD3	MSMS	A375_MHC_IP_R2	2	482.6663513183594	2	482.757298	963.500044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.223	1	47.985	47.485	48.485	0.76128								0	0	0	0.16876	1	17702	17702		24.21	2.4633	1		+		31809	19231	23026	23193	31039	31039					0.016833540961897597
LLPDCDTYF	9	Unmodified	_LLPDCDTYF_					0	0	0			REV__ENSG00000105641|ENST00000222248|SLC5A5	REV__ENSG00000105641|ENST00000222248|SLC5A5	MSMS	A375_MHC_IP_R1	1	543.684814453125	2	543.74425	1085.47395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.183	1	62.183	61.683	62.683	0								0	0	0	0.1521	1	22448	22448		18.135	6.4947	1		+		31810	17397	23027	23194	31040	31040					-0.06537004656593126
LLPDIKLLL	9	Unmodified	_LLPDIKLLL_					0	0	0			REV__ENSG00000169288|ENST00000315567|MRPL1	REV__ENSG00000169288|ENST00000315567|MRPL1	MULTI-MSMS	A375_MHC_IP_R1	1	519.7515258789062	2	519.352086	1036.68962	-1.0642	-0.00055269	-0.022811	-1.1847E-05	-1.087	-0.00056454	519.3520180836209	122.71	1.3592	122.71	122.38	123.74	0					47	26	2	0	0	0	0.018546	2	45628	45628;45968		85.272	14.138	1	683240000	+		31811	20922	23028	23195	31041;31042	31041					0.1727412459038078
LLPDIKLLL	9	Unmodified	_LLPDIKLLL_					0	0	0			REV__ENSG00000169288|ENST00000315567|MRPL1	REV__ENSG00000169288|ENST00000315567|MRPL1	MULTI-SECPEP	A375_MHC_IP_R1	1	519.7515258789062	2	519.352086	1036.68962	-1.0642	-0.00055269	-0.022811	-1.1847E-05	-1.087	-0.00056454	519.3520180836209	122.71	1.3592	122.71	122.38	123.74	0					47	26	2	0	0	0	0.053904	1	45628	45628		85.272	16.167	1	683240000	+		31812	20922	23028	23195	31043	31043					0.1727412459038078
LLPDIKLLL	9	Unmodified	_LLPDIKLLL_					0	0	0			REV__ENSG00000169288|ENST00000315567|MRPL1	REV__ENSG00000169288|ENST00000315567|MRPL1	MULTI-MSMS	A375_MHC_IP_R2	2	519.7515258789062	2	519.352086	1036.68962	-0.68898	-0.00035783	0.056807	2.9503E-05	-0.63218	-0.00032832	519.3520154105661	121.54	0.96374	121.98	121.67	122.64	0.44488					57	18	4	0	0	0	0.034481	1	46700	46700		71.134	6.8973	1	398850000	+		31813	20922	23028	23195	31044	31044					0.1727412459038078
LLPDLEFYV	9	Unmodified	_LLPDLEFYV_					0	0	0		nc|ENSG00000178202|Q7Z4H8-3|POGLUT3;nc|ENSG00000178202|Q7Z4H8-2|POGLUT3;ENSG00000178202|ENST00000323468|POGLUT3	nc|ENSG00000178202|Q7Z4H8-3|POGLUT3	nc|ENSG00000178202|Q7Z4H8-3|POGLUT3	MULTI-MSMS	A375_MHC_IP_R1	1	555.1993408203125	2	554.799883	1107.58521	-0.79933	-0.00044347	-0.066588	-3.6943E-05	-0.86592	-0.00048041	554.7997777020834	132.46	0.20363	132.46	132.33	132.54	0					6	3	2	0	0	0	0.5339	1	51106	51106		18.135	4.6271	1	3590300			31814	8143	23029	23196	31045	31045					0.03572378043008939
LLPDLIQKV	9	Unmodified	_LLPDLIQKV_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000141279|P55786-2|NPEPPS;ENST00000531486.1_1_17:45681241-45696545:+|nuORF;ENST00000530514.5_1_17:45668242-45699283:+|nuORF	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-SECPEP	A375_MHC_IP_R1	1	520.2315673828125	2	519.831517	1037.64848	-0.48462	-0.00025192	0.00050806	2.641E-07	-0.48411	-0.00025166	519.8314880582798	93.747	0.55693	93.747	93.484	94.041	0					18	10	2	0	0	0	0.28216	1	34457	34457		41.84	7.7372	1	2066500			31815	5224	23030	23197	31046	31046					0.13116363550898313
LLPDLIQKV	9	Unmodified	_LLPDLIQKV_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000141279|P55786-2|NPEPPS;ENST00000531486.1_1_17:45681241-45696545:+|nuORF;ENST00000530514.5_1_17:45668242-45699283:+|nuORF	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-SECPEP	A375_MHC_IP_R2	2	520.2313842773438	2	519.831517	1037.64848	-0.5903	-0.00030686	0.024896	1.2942E-05	-0.5654	-0.00029391	519.8314859899671	92.814	0.40497	93.553	93.341	93.746	0.73901					17	7	3	0	0	0	0.24324	1	35320	35320		38.176	14.155	1	2653300			31816	5224	23030	23197	31047	31047					0.13116363550898313
LLPDNVHYV	9	Unmodified	_LLPDNVHYV_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-SECPEP	A375_MHC_IP_R1	1	535.6873779296875	2	535.287474	1068.5604	-0.61219	-0.0003277	0.28742	0.00015385	-0.32476	-0.00017384	535.2875288638471	63.013	0.56338	63.013	62.762	63.326	0					24	10	3	0	0	0	0.53748	1	22762	22762		24.021	4.7636	1	5331700			31817	1156	23031	23198	31048	31048					0.028857429602794582
LLPDNVHYV	9	Unmodified	_LLPDNVHYV_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-SECPEP	A375_MHC_IP_R2	2	535.6868896484375	2	535.287474	1068.5604	-0.99003	-0.00052995	0.044954	2.4063E-05	-0.94508	-0.00050589	535.2873864012563	62.258	0.60958	63.001	62.724	63.333	0.74263					27	11	4	0	0	0	0.53748	1	23620	23620		30.637	6.616	1	3808800			31818	1156	23031	23198	31049	31049					0.028857429602794582
LLPEGPPAI	9	Unmodified	_LLPEGPPAI_					0	0	0		ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1;nc|ENSG00000051108|Q15011-4|HERPUD1	ENSG00000051108|ENST00000439977|HERPUD1	ENSG00000051108|ENST00000439977|HERPUD1	MULTI-MSMS	A375_MHC_IP_R1	1	454.1684875488281	2	453.768386	905.522219	-0.30101	-0.00013659	-0.027908	-1.2664E-05	-0.32892	-0.00014925	453.76832283476523	94.165	1.4729	94.165	93.738	95.211	0					68	28	4	0	0	0	0.011892	1	34543	34543		93.883	45.538	1	20859000			31819	1233	23032	23199	31050	31050					0.06567857045604342
LLPEGPPAI	9	Unmodified	_LLPEGPPAI_					0	0	0		ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1;nc|ENSG00000051108|Q15011-4|HERPUD1	ENSG00000051108|ENST00000439977|HERPUD1	ENSG00000051108|ENST00000439977|HERPUD1	MULTI-MSMS	A375_MHC_IP_R1	1	907.2586669921875	1	906.529495	905.522219	-0.23336	-0.00021155	-0.15383	-0.00013945	-0.3872	-0.00035101	906.5292495352287	94.175	0.96265	94.175	93.84	94.802	0					46	18	3	0	0	0	0.32899	1	34830	34830		28.487	5.3384	1	15434000			31820	1233	23032	23199	31051	31051					0.06567857045604342
LLPEGPPAI	9	Unmodified	_LLPEGPPAI_					0	0	0		ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1;nc|ENSG00000051108|Q15011-4|HERPUD1	ENSG00000051108|ENST00000439977|HERPUD1	ENSG00000051108|ENST00000439977|HERPUD1	MULTI-MSMS	A375_MHC_IP_R2	2	454.18658447265625	2	453.768386	905.522219	-0.10779	-4.8911E-05	0.26577	0.0001206	0.15798	7.1685E-05	453.7684329498756	93.439	1.2173	94.184	93.752	94.969	0.74461					61	23	4	0	0	0	0.018481	1	35510	35510		85.357	27.885	1	20726000			31821	1233	23032	23199	31052	31052					0.06567857045604342
LLPEKVVAR	9	Unmodified	_LLPEKVVAR_					0	0	0			REV__nc|ENSG00000039068|P12830-2|CDH1	REV__nc|ENSG00000039068|P12830-2|CDH1	MULTI-SECPEP	A375_MHC_IP_R1	1	513.2294311523438	2	512.829309	1023.64407	-0.43948	-0.00022538	0.012998	6.6659E-06	-0.42648	-0.00021871	512.829268426999	33.823	0.35341	33.823	33.648	34.001	0					11	6	2	0	0	0	0.59098	1	11098	11098		27.629	0	1	3602400	+		31822	16330	23033	23200	31053	31053					0.13318899127989425
LLPEKVVAR	9	Unmodified	_LLPEKVVAR_					0	0	0			REV__nc|ENSG00000039068|P12830-2|CDH1	REV__nc|ENSG00000039068|P12830-2|CDH1	MULTI-MATCH	A375_MHC_IP_R2	2		2	512.829309	1023.64407	-0.84103	-0.0004313	-0.26082	-0.00013375	-1.1018	-0.00056506	512.8290949786767	32.993	0.35726	33.73	33.518	33.876	0.73692	-0.046534	-0.00019711	NaN	21.537	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2727300	+		31823	16330	23033	23200							0.13318899127989425
LLPFDQHF	8	Unmodified	_LLPFDQHF_					0	0	0		chr17:43941654-43944913|123|17.49|0.03|9.19|-|1|TE_info:THE1D,THE1D_dup11417,ERVL-MaLR,LTR,donor,-,43944913,43945207|PPY,None|3	chr17:43941654-43944913|123|17.49|0.03|9.19|-|1|TE_info:THE1D,THE1D_dup11417,ERVL-MaLR,LTR,donor,-,43944913,43945207|PPY,None|3	chr17:43941654-43944913|123|17.49|0.03|9.19|-|1|TE_info:THE1D,THE1D_dup11417,ERVL-MaLR,LTR,donor,-,43944913,43945207|PPY,None|3	MULTI-MSMS	A375_MHC_IP_R2	2	509.1921081542969	2	508.763635	1015.51272	-0.67872	-0.00034531	0.32916	0.00016746	-0.34956	-0.00017784	508.76355463216856	88.383	0.91255	89.115	88.671	89.584	0.7318					39	17	4	0	0	0	0.75322	1	33781	33781		19.439	0	1	3936600			31824	445	23034	23201	31054	31054					0.005580887600899587
LLPFRGLL	8	Unmodified	_LLPFRGLL_					0	0	0			REV__tr|U7STB4|U7STB4_FUSNUIroncomplextransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01353PE=4SV=1	REV__tr|U7STB4|U7STB4_FUSNUIroncomplextransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01353PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	465.202392578125	2	464.802563	927.590573	0.041522	1.93E-05	-0.30043	-0.00013964	-0.25891	-0.00012034	464.802387442661	112.09	0.50826	112.09	111.87	112.38	0					15	9	2	0	0	0	0.97144	1	41099	41099		9.3474	0	1	1753100	+		31825	28471	23035	23202	31055	31055					0.1238814641612862
LLPFVREAL	9	Unmodified	_LLPFVREAL_					0	0	0			REV__ENSG00000168348|ENST00000307169|INSM2	REV__ENSG00000168348|ENST00000307169|INSM2	MULTI-MSMS	A375_MHC_IP_R2	2	530.0303955078125	2	529.32386	1056.63317	-0.34393	-0.00018205	-1.2081	-0.00063949	-1.5521	-0.00082154	529.3234727720939	94.514	0.65851	95.259	94.919	95.577	0.74473					25	12	3	0	0	0	0.65748	1	35817	35817		15.847	1.9411	1	3964700	+		31826	20846	23036	23203	31056	31056					0.10711496753697247
LLPGCLSFCA	10	Unmodified	_LLPGCLSFCA_					0	0	0			REV__ENSG00000181104|ENST00000319211|F2R	REV__ENSG00000181104|ENST00000319211|F2R	MULTI-MSMS	A375_MHC_IP_R2	2	512.6533203125	2	512.253731	1022.49291	-1.0817	-0.00055408	-0.58311	-0.0002987	-1.6648	-0.00085278	512.2537374579678	56.353	2.6473	57.103	56.591	59.238	0.75015					129	51	5	0	0	0	0.49527	1	21175	21175		28.487	0.31361	1	37829000	+		31827	21638	23037	23204	31057	31057					-0.017437465665466334
LLPGCPCF	8	Unmodified	_LLPGCPCF_					0	0	0		ENST00000442711.1_1_7:41739953-41740040:-|nuORF	ENST00000442711.1_1_7:41739953-41740040:-|nuORF	ENST00000442711.1_1_7:41739953-41740040:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	425.6031799316406	2	425.20351	848.392467	0.016395	6.9712E-06	-0.34589	-0.00014707	-0.3295	-0.0001401	425.20329547635754	94.05	0.55631	94.795	94.515	95.071	0.74474					20	10	3	0	0	0	0.77686	1	35743	35743		6.3541	0	1	2536800			31828	11998	23038	23205	31058	31058					-0.03779358829535795
LLPGQAFDWFD	11	Unmodified	_LLPGQAFDWFD_					0	0	0			REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1	REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1	MSMS	A375_MHC_IP_R1	1	436.9031982421875	3	436.880156	1307.61864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.314	1	66.314	65.814	66.814	0								0	0	0	0.16263	1	24010	24010		5.0475	1.1712	1		+		31829	17490	23039	23206	31059	31059					-0.02286620185122956
LLPGRLPLWF	10	Unmodified	_LLPGRLPLWF_					0	0	0		ENST00000324822.15_1_17:7293274-7293649:-|nuORF	ENST00000324822.15_1_17:7293274-7293649:-|nuORF	ENST00000324822.15_1_17:7293274-7293649:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	606.7700805664062	2	606.368601	1210.72265	-0.43411	-0.00026323	1.3486	0.00081777	0.91453	0.00055454	606.3693505744959	127.29	1.6204	127.56	126.75	128.37	0.26593					62	31	3	0	0	0	0.72335	1	50198	50198		1.8442	0.36234	1	24870000			31830	10719	23040	23207	31060	31060					0.1257175143305176
LLPHLHGSD	9	Unmodified	_LLPHLHGSD_					0	0	0			REV__ENST00000592662.5_1_19:13039347-13044510:-|nuORF	REV__ENST00000592662.5_1_19:13039347-13044510:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	494.6793518066406	2	494.764166	987.513779	-0.48635	-0.00024063	-0.35914	-0.00017769	-0.84549	-0.00041832	494.7638778521066	67.367	0.71092	68.103	67.597	68.308	0.73631					27	13	4	0	0	0	0.62719	1	25405	25405		13.508	0.46542	1	3481700	+		31831	21543	23041	23208	31061	31061					0.01952303128996391
LLPKHVIVQR	10	Unmodified	_LLPKHVIVQR_					0	0	0		ENST00000392253.2_1_2:202276919-202277543:-|nuORF	ENST00000392253.2_1_2:202276919-202277543:-|nuORF	ENST00000392253.2_1_2:202276919-202277543:-|nuORF	MSMS	A375_MHC_IP_R2	2	401.6034851074219	3	401.595914	1201.76591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.916	1	31.635	31.135	32.135	0.71857								0	0	0	0.15593	1	10899	10899		1.5923	0.26264	1				31832	11419	23042	23209	31062	31062					0.17309941210351099
LLPKQEKRHVL	11	Unmodified	_LLPKQEKRHVL_					0	0	0		ENSG00000051108|ENST00000439977|HERPUD1;ENST00000569569.5_1_16:56966069-56970730:+|nuORF;ENST00000568676.5_1_16:56966069-56969519:+|nuORF;ENST00000570273.5_1_16:56966069-56976120:+|nuORF	ENSG00000051108|ENST00000439977|HERPUD1	ENSG00000051108|ENST00000439977|HERPUD1	MSMS	A375_MHC_IP_R2	2	681.041748046875	2	680.924803	1359.83505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.92	1	68.655	68.155	69.155	0.73511								0	0	0	0.1635	1	25739	25739		0.35063	0	1				31833	1233	23043	23210	31063	31063					0.1695298043925959
LLPLQRTDREL	11	Unmodified	_LLPLQRTDREL_					0	0	0			REV__nc|ENSG00000165271|Q9H6R4-2|NOL6	REV__nc|ENSG00000165271|Q9H6R4-2|NOL6	MULTI-MSMS	A375_MHC_IP_R1	1	678.3642578125	2	677.396076	1352.7776	-0.87952	-0.00059578	-0.59171	-0.00040082	-1.4712	-0.00099661	677.3955243544059	132.36	6.0136	132.36	131.88	137.9	0					366	117	7	0	0	0	0.73818	1	51368	51368		1.0715	1.0715	1	943820000	+		31834	20569	23044	23211	31064	31064					0.11532093442997393
LLPLRVRAI	9	Unmodified	_LLPLRVRAI_					0	0	0		ENST00000361264.8_1_9:34126412-34126766:-|nuORF	ENST00000361264.8_1_9:34126412-34126766:-|nuORF	ENST00000361264.8_1_9:34126412-34126766:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	526.2606201171875	2	525.860944	1049.70733	-0.67837	-0.00035673	-0.0059258	-3.1162E-06	-0.6843	-0.00035985	525.860835908758	84.554	0.40721	84.554	84.341	84.749	0					12	7	2	0	0	0	0.77244	1	30990	30990		2.3027	0	1	1880900			31835	11040	23045	23212	31065	31065					0.1844688463586408
LLPLRVRAI	9	Unmodified	_LLPLRVRAI_					0	0	0		ENST00000361264.8_1_9:34126412-34126766:-|nuORF	ENST00000361264.8_1_9:34126412-34126766:-|nuORF	ENST00000361264.8_1_9:34126412-34126766:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	526.3713989257812	2	525.860944	1049.70733	-0.44259	-0.00023274	-0.2014	-0.00010591	-0.64399	-0.00033865	525.8605709544627	83.284	0.45678	84.024	83.797	84.254	0.73962					13	8	2	0	0	0	0.72507	1	31645	31645		4.756	0.42677	1	1369700			31836	11040	23045	23212	31066	31066					0.1844688463586408
LLPLSSPSFS	10	Unmodified	_LLPLSSPSFS_					0	0	0		ENST00000506043.1_1_X:77218070-77218340:+|nuORF	ENST00000506043.1_1_X:77218070-77218340:+|nuORF	ENST00000506043.1_1_X:77218070-77218340:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	523.65283203125	2	524.289682	1046.56481	-0.44523	-0.00023343	-1.2709	-0.00066631	-1.7161	-0.00089974	524.7911442421606	88.811	0.30457	89.543	89.279	89.584	0.7318					9	5	2	0	0	0	0.76414	1	33769	33769		20.454	0	1	910230			31837	12849	23046	23213	31067	31067					0.04339207383191024
LLPLTFTSVP	10	Unmodified	_LLPLTFTSVP_					0	0	0			REV__ENST00000558983.5_1_15:100173318-100211695:+|nuORF	REV__ENST00000558983.5_1_15:100173318-100211695:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	545.0165405273438	2	544.323525	1086.6325	-0.69014	-0.00037566	-0.9839	-0.00053556	-1.674	-0.00091122	544.3228963560608	134.97	0.35625	135.11	135	135.36	0.13901					10	6	2	0	0	0	0.90853	1	53099	53099		10.824	0	1	1997500	+		31838	26143	23047	23214	31068	31068					0.09264657313997304
LLPMEENLP	9	Unmodified	_LLPMEENLP_					0	0	0			REV__KMT2D|p.P2390Rfs*36|1|0.37|ENSG00000167548|chr12:49040601-49040601|G/-|frameshift_variant	REV__KMT2D|p.P2390Rfs*36|1|0.37|ENSG00000167548|chr12:49040601-49040601|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	527.682373046875	2	528.275718	1054.53688	-0.50115	-0.00026475	1.3567	0.00071672	0.85556	0.00045197	528.7774762638965	79.618	0.41154	79.618	79.367	79.778	0					12	7	2	0	0	0	0.55359	1	29002	29002		28.487	1.6032	1	2409400	+		31839	26866	23048	23215	31069	31069					0.011795611314482812
LLPPAPPSL	9	Unmodified	_LLPPAPPSL_					0	0	0			REV__ENSG00000185950|ENST00000375856|IRS2	REV__ENSG00000185950|ENST00000375856|IRS2	MULTI-MSMS	A375_MHC_IP_R1	1	453.1788330078125	2	452.778754	903.542954	-0.090149	-4.0817E-05	-1.7216	-0.00077952	-1.8118	-0.00082034	452.77884790471484	93.253	1.32	93.253	92.871	94.191	0					38	25	3	0	0	0	0.060021	1	34313	34313		60.39	22.238	1	1211800	+		31840	21935	23049	23216	31070	31070					0.0873244742526822
LLPPCWYR	8	Unmodified	_LLPPCWYR_					0	0	0			REV__nc|ENSG00000095319|Q5SRE5-2|NUP188	REV__nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-SECPEP	A375_MHC_IP_R1	1	523.6796264648438	2	524.275855	1046.53716	-0.21143	-0.00011085	0.016988	8.9066E-06	-0.19444	-0.00010194	524.2758175359447	70.008	0.96614	70.008	69.579	70.545	0					39	18	3	0	0	0	0.972	1	25299	25299		5.7604	5.7604	1	6816100	+		31841	16991	23050	23217	31071	31071					0.015750256419323705
LLPPGPRQ	8	Unmodified	_LLPPGPRQ_					0	0	0		ENST00000360271.3_1_9:139972605-139973049:+|nuORF	ENST00000360271.3_1_9:139972605-139973049:+|nuORF	ENST00000360271.3_1_9:139972605-139973049:+|nuORF	MSMS	A375_MHC_IP_R2	2	439.2941589355469	2	439.266345	876.518136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.246	1	45.015	44.515	45.515	0.7691								0	0	0	0.16876	1	16511	16511		10.183	0	1				31842	11024	23051	23218	31072	31072					0.07493812342556794
LLPPPPCPA	9	Carbamidomethyl (C)	_LLPPPPC(Carbamidomethyl (C))PA_	LLPPPPC(1)PA		LLPPPPC(94)PA		0	1	0		nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;ENSG00000001036|ENST00000002165|FUCA2;ENSG00000182450|ENST00000422670|KCNK4;nc|ENSG00000182450|Q9NYG8-2|KCNK4	nc|ENSG00000001036|Q9BTY2-2|FUCA2	nc|ENSG00000001036|Q9BTY2-2|FUCA2	MULTI-MSMS	A375_MHC_IP_R1	1	481.6785583496094	2	481.262413	960.510274	-0.61331	-0.00029516	0.10121	4.8707E-05	-0.5121	-0.00024646	481.2625690050333	66.606	2.2881	66.606	65.972	68.26	0					92	44	3	0	0	0	0.011986	2	24054	24011;24054		93.763	57.297	1	14874000			31843	841	23052	23219	31073;31074	31074	0				0.028439170307706263
LLPPPPCPA	9	Carbamidomethyl (C)	_LLPPPPC(Carbamidomethyl (C))PA_	LLPPPPC(1)PA		LLPPPPC(46)PA		0	1	0		nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;ENSG00000001036|ENST00000002165|FUCA2;ENSG00000182450|ENST00000422670|KCNK4;nc|ENSG00000182450|Q9NYG8-2|KCNK4	nc|ENSG00000001036|Q9BTY2-2|FUCA2	nc|ENSG00000001036|Q9BTY2-2|FUCA2	MULTI-MSMS	A375_MHC_IP_R2	2	481.66217041015625	2	481.262413	960.510274	-0.75025	-0.00036107	-0.086289	-4.1527E-05	-0.83654	-0.0004026	481.2624720642728	65.767	1.9343	66.505	66.018	67.953	0.73812					97	37	4	0	0	0	0.12743	1	24880	24880		45.75	23.297	1	17062000			31844	841	23052	23219	31075	31075	0				0.028439170307706263
LLPPPPCPA	9	Unmodified	_LLPPPPCPA_					0	0	0		nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;ENSG00000001036|ENST00000002165|FUCA2;ENSG00000182450|ENST00000422670|KCNK4;nc|ENSG00000182450|Q9NYG8-2|KCNK4	nc|ENSG00000001036|Q9BTY2-2|FUCA2	nc|ENSG00000001036|Q9BTY2-2|FUCA2	MULTI-MSMS	A375_MHC_IP_R1	1	905.8363647460938	1	904.496087	903.48881	-0.1452	-0.00013133	-0.031455	-2.8451E-05	-0.17665	-0.00015978	904.4960299137709	79.548	2.2427	79.548	78.756	80.999	0					82	43	2	0	0	0	0.4782	2	28882	28823;28882		20.871	14.582	1	9647400			31845	841	23052	23220	31076;31077	31077					0.03320532002044274
LLPPPPCPA	9	Unmodified	_LLPPPPCPA_					0	0	0		nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;ENSG00000001036|ENST00000002165|FUCA2;ENSG00000182450|ENST00000422670|KCNK4;nc|ENSG00000182450|Q9NYG8-2|KCNK4	nc|ENSG00000001036|Q9BTY2-2|FUCA2	nc|ENSG00000001036|Q9BTY2-2|FUCA2	MULTI-MSMS	A375_MHC_IP_R1	1	453.15191650390625	2	452.751682	903.48881	-0.19218	-8.701E-05	0.256	0.00011591	0.063823	2.8896E-05	452.75175025931264	79.551	4.9773	79.551	78.657	83.634	0					233	97	4	0	0	0	0.011986	1	28834	28834		93.763	49.356	1	33883000			31846	841	23052	23220	31078	31078					0.03320532002044274
LLPPPPCPA	9	Unmodified	_LLPPPPCPA_					0	0	0		nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;ENSG00000001036|ENST00000002165|FUCA2;ENSG00000182450|ENST00000422670|KCNK4;nc|ENSG00000182450|Q9NYG8-2|KCNK4	nc|ENSG00000001036|Q9BTY2-2|FUCA2	nc|ENSG00000001036|Q9BTY2-2|FUCA2	MULTI-MSMS	A375_MHC_IP_R2	2	453.1513977050781	2	452.751682	903.48881	-0.19129	-8.6607E-05	-0.21609	-9.7836E-05	-0.40738	-0.00018444	452.7515906721293	78.515	4.9773	79.26	78.522	83.499	0.74474					237	97	4	0	0	0	0.011986	2	29901	29901;30326		93.763	48.013	1	35952000			31847	841	23052	23220	31079;31080	31079					0.03320532002044274
LLPPPPRVGG	10	Unmodified	_LLPPPPRVGG_					0	0	0		ENSG00000161638|ENST00000293379|ITGA5	ENSG00000161638|ENST00000293379|ITGA5	ENSG00000161638|ENST00000293379|ITGA5	MULTI-SECPEP	A375_MHC_IP_R1	1	502.2081298828125	2	501.808377	1001.6022	-0.23665	-0.00011875	0.0045186	2.2675E-06	-0.23213	-0.00011649	501.8083457186968	51.469	0.91673	51.469	51.168	52.085	0					43	17	3	0	0	0	0.69172	1	18227	18227		32.305	0	1	8683900			31848	6481	23053	23221	31081	31081					0.10146343439475913
LLPPPPRVGG	10	Unmodified	_LLPPPPRVGG_					0	0	0		ENSG00000161638|ENST00000293379|ITGA5	ENSG00000161638|ENST00000293379|ITGA5	ENSG00000161638|ENST00000293379|ITGA5	MULTI-SECPEP	A375_MHC_IP_R2	2	502.20794677734375	2	501.808377	1001.6022	-0.72463	-0.00036362	0.2616	0.00013127	-0.46303	-0.00023235	501.80844530161414	50.696	0.96184	51.45	51.108	52.07	0.75406					45	18	4	0	0	0	0.69172	1	19025	19025		32.305	0	1	9556500			31849	6481	23053	23221	31082	31082					0.10146343439475913
LLPPPPTSA	9	Unmodified	_LLPPPPTSA_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	MULTI-SECPEP	A375_MHC_IP_R1	1	447.16070556640625	2	446.760561	891.506569	-0.07463	-3.3342E-05	0.31707	0.00014166	0.24244	0.00010831	446.76060428841384	60.283	1.3223	60.283	59.701	61.024	0					49	25	3	0	0	0	0.24479	1	21615	21615		42.095	6.0504	1	3302000			31850	7019	23054	23222	31083	31083					0.05647570528549295
LLPPPPTSA	9	Unmodified	_LLPPPPTSA_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	MULTI-SECPEP	A375_MHC_IP_R2	2	892.1548461914062	1	892.513845	891.506569	-0.85072	-0.00075928	0.11128	9.9321E-05	-0.73943	-0.00065995	892.5138871521567	59.476	1.0607	60.223	59.845	60.906	0.74714					34	20	2	0	0	0	0.28475	1	22504	22504		48.346	6.2513	1	3727500			31851	7019	23054	23222	31084	31084					0.05647570528549295
LLPPPPTSA	9	Unmodified	_LLPPPPTSA_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	MULTI-MATCH	A375_MHC_IP_R1	1		1	892.513845	891.506569	-0.20326	-0.00018142	0.21566	0.00019248	0.012397	1.1064E-05	892.5138846748885	60.286	1.1196	60.286	59.803	60.922	0	0.031473	4.7213E-05	NaN	48.346	36	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4047800			31852	7019	23054	23222							0.05647570528549295
LLPSCPEPP	9	Unmodified	_LLPSCPEPP_					0	0	0		nc|ENSG00000160961|Q96JL9-2|ZNF333;ENST00000392987.7_1_19:14804303-14817025:+|nuORF	nc|ENSG00000160961|Q96JL9-2|ZNF333	nc|ENSG00000160961|Q96JL9-2|ZNF333	MULTI-MSMS	A375_MHC_IP_R1	1	952.8822021484375	1	952.480831	951.473554	0.15239	0.00014514	-0.44043	-0.00041951	-0.28805	-0.00027436	952.4804476818783	82.232	2.4319	82.232	81.253	83.685	0					81	47	2	0	0	0	0.55818	1	29696	29696		16.942	0	1	3431200			31853	11432	23055	23223	31085	31085					-0.004123795857935875
LLPSGFPHFY	10	Unmodified	_LLPSGFPHFY_					0	0	0		ENST00000259622.10_2_9:1056133-1057270:+|nuORF	ENST00000259622.10_2_9:1056133-1057270:+|nuORF	ENST00000259622.10_2_9:1056133-1057270:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	589.70849609375	2	589.305667	1176.59678	-0.5115	-0.00030143	1.3205	0.00077817	0.80898	0.00047674	589.3064397892275	104.94	1.0162	105.7	105.26	106.28	0.76308					51	19	4	0	0	0	0.40101	1	39843	39843		34.102	5.6156	1	9813900			31854	10261	23056	23224	31086	31086					0.015546198570064007
LLPSPSAKSL	10	Unmodified	_LLPSPSAKSL_					0	0	0			REV__ENST00000362003.9_1_4:760752-760959:+|nuORF	REV__ENST00000362003.9_1_4:760752-760959:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	508.6578063964844	2	506.8055	1011.59645	-0.74277	-0.00037644	-0.15934	-8.0752E-05	-0.9021	-0.00045719	506.8053588786673	77.227	1.3206	77.97	77.303	78.624	0.74293					58	25	4	0	0	0	0.6806	1	29402	29402		14.838	0.93222	1	26290000	+		31855	23928	23057	23225	31087	31087					0.0911120013714708
LLPSVFSSC	9	Unmodified	_LLPSVFSSC_					0	0	0			REV__ENST00000609516.1_1_1:38148823-38149105:-|nuORF	REV__ENST00000609516.1_1_1:38148823-38149105:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	953.1202392578125	1	952.480831	951.473554	0.15239	0.00014514	-0.44043	-0.00041951	-0.28805	-0.00027436	952.4804476818783	82.232	2.4319	82.232	81.253	83.685	0					81	47	2	0	0	0	0.55818	1	29904	29904		16.942	2.3606	1	3431200	+		31856	26569	23058	23226	31088	31088					-0.004123795857822188
LLPSVFSSC	9	Unmodified	_LLPSVFSSC_					0	0	0			REV__ENST00000609516.1_1_1:38148823-38149105:-|nuORF	REV__ENST00000609516.1_1_1:38148823-38149105:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	953.3762817382812	1	952.480831	951.473554	-0.21526	-0.00020503	-0.31943	-0.00030425	-0.53468	-0.00050928	952.4804487538726	81.713	2.3326	82.456	81.518	83.851	0.74293					71	45	2	0	0	0	0.55818	1	30951	30951		16.942	2.3606	1	3469700	+		31857	26569	23058	23226	31089	31089					-0.004123795857822188
LLPSVFSSC	9	Unmodified	_LLPSVFSSC_					0	0	0			REV__ENST00000609516.1_1_1:38148823-38149105:-|nuORF	REV__ENST00000609516.1_1_1:38148823-38149105:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	951.8610229492188	1	952.480831	951.473554	-0.21526	-0.00020503	-0.31943	-0.00030425	-0.53468	-0.00050928	952.4804487538726	81.713	2.3326	82.456	81.518	83.851	0.74293					71	45	2	0	0	0	0.55359	1	31108	31108		28.487	2.1456	1	3469700	+		31858	26569	23058	23226	31090	31090					-0.004123795857822188
LLPSYCEK	8	Unmodified	_LLPSYCEK_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1;REV__nc|ENSG00000131018|Q8NF91-7|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	A375_MHC_IP_R1	1	952.3641357421875	1	952.480831	951.473554	0.15239	0.00014514	-0.44043	-0.00041951	-0.28805	-0.00027436	952.4804476818783	82.232	2.4319	82.232	81.253	83.685	0					81	47	2	0	0	0	0.73946	1	30198	30198		23.148	0	1	3431200	+		31859	18581;27223	23059	23227	31091	31091					-0.004123795857935875
LLPVLILIVKK	11	Unmodified	_LLPVLILIVKK_					0	0	0		ENSG00000160593|ENST00000356289|JAML;nc|ENSG00000160593|Q86YT9-4|JAML;nc|ENSG00000160593|Q86YT9-2|JAML	ENSG00000160593|ENST00000356289|JAML	ENSG00000160593|ENST00000356289|JAML	MSMS	A375_MHC_IP_R1	1	624.994384765625	2	624.95451	1247.89447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.649	1	96.649	96.149	97.149	0								0	0	0	0.16337	1	35517	35517		1.1933	0	1				31860	6426	23060	23228	31092	31092					0.2804348340073375
LLPYVLRIWLW	11	Unmodified	_LLPYVLRIWLW_					0	0	0		ENST00000367742.7_1_1:171561357-171561441:+|nuORF	ENST00000367742.7_1_1:171561357-171561441:+|nuORF	ENST00000367742.7_1_1:171561357-171561441:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	491.69866943359375	3	491.298986	1470.87513	-0.33976	-0.00016692	0.47102	0.00023141	0.13126	6.4487E-05	491.29909963463336	138.4	2.4305	138.49	138.11	140.54	0.083969					116	47	5	0	0	0	0.73924	1	54649	54649		0.094841	0.094841	1	31721000			31861	11102	23061	23229	31093	31093					0.15852527109836956
LLQAAQIL	8	Unmodified	_LLQAAQIL_					0	0	0			REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A;REV__ENSG00000167306|ENST00000285039|MYO5B	REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MSMS	A375_MHC_IP_R1	1	435.3183898925781	2	435.276378	868.538203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.933	1	65.933	65.433	66.433	0								0	0	0	0.16876	1	23875	23875		5.7604	0	1		+		31862	22295;20747	23062	23230	31094	31094					0.09867563282523406
LLQAEEHLR	9	Unmodified	_LLQAEEHLR_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-6|OBSCN;REV__OBSCN|p.R4794Afs*50|1|0.26|ENSG00000154358|chr1:228319130-228319130|C/-|frameshift_variant	REV__nc|ENSG00000154358|Q5VST9-6|OBSCN	MSMS	A375_MHC_IP_R2	2	555.1996459960938	2	554.809105	1107.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.38	1	132.57	132.07	133.07	0.18953								0	0	0	0.15142	1	52074	52074		19.257	4.4187	1		+		31863	27298;27637	23063	23231	31095	31095					0.05415932737537332
LLQCGRII	8	Unmodified	_LLQCGRII_					0	0	0		nc|ENSG00000103852|Q5W5X9-2|TTC23;nc|ENSG00000103852|Q5W5X9-3|TTC23;ENSG00000103852|ENST00000394132|TTC23	nc|ENSG00000103852|Q5W5X9-2|TTC23	nc|ENSG00000103852|Q5W5X9-2|TTC23	MSMS	A375_MHC_IP_R1	1	458.2049560546875	2	458.275855	914.537157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.88	1	96.88	96.38	97.38	0								0	0	0	0.16876	1	35600	35600		15.768	0	1				31864	2471	23064	23232	31096	31096					0.07647025641961136
LLQDKQFEL	9	Unmodified	_LLQDKQFEL_					0	0	0		ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000568029.5_1_15:42462052-42470793:-|nuORF;ENST00000570023.1_1_15:42465909-42470478:-|nuORF	ENSG00000166887|ENST00000318006|VPS39;ENST00000570023.1_1_15:42465909-42470478:-|nuORF	ENSG00000166887|ENST00000318006|VPS39	MULTI-SECPEP	A375_MHC_IP_R1	1	567.7130126953125	2	567.313689	1132.61282	-0.35543	-0.00020164	-0.93854	-0.00053245	-1.294	-0.00073409	567.313562432534	74.973	0.80905	74.973	74.553	75.362	0					31	15	4	0	0	0	0.011357	1	27282	27282		103.42	24.691	1	5473700			31865	7127;13598	23065	23233	31097	31097					0.05182281303223135
LLQDKQFEL	9	Unmodified	_LLQDKQFEL_					0	0	0		ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000568029.5_1_15:42462052-42470793:-|nuORF;ENST00000570023.1_1_15:42465909-42470478:-|nuORF	ENSG00000166887|ENST00000318006|VPS39;ENST00000570023.1_1_15:42465909-42470478:-|nuORF	ENSG00000166887|ENST00000318006|VPS39	MULTI-SECPEP	A375_MHC_IP_R2	2	567.7131958007812	2	567.313689	1132.61282	-0.38363	-0.00021764	0.089534	5.0794E-05	-0.2941	-0.00016684	567.3137541226542	74.094	0.76124	74.832	74.604	75.365	0.73752					30	14	3	0	0	0	0.011143	1	28114	28114		125.04	32.546	1	5845500			31866	7127;13598	23065	23233	31098	31098					0.05182281303223135
LLQDPVGV	8	Unmodified	_LLQDPVGV_					0	0	0		ENST00000504194.5_1_4:3388118-3416046:+|nuORF;ENST00000506998.5_1_4:3371967-3419414:+|nuORF;nc|ENSG00000159788|O14924-7|RGS12;nc|ENSG00000159788|O14924-6|RGS12;ENST00000508158.5_1_4:3386893-3430067:+|nuORF;nc|ENSG00000159788|O14924-2|RGS12;nc|ENSG00000159788|O14924-3|RGS12;RGS12|p.I1091Pfs*33|1|0.09|ENSG00000159788|chr4:3425492-3425493|-/CGCCC|frameshift_variant;nc|ENSG00000159788|O14924-5|RGS12;nc|ENSG00000159788|O14924-4|RGS12;ENSG00000159788|ENST00000336727|RGS12	ENST00000504194.5_1_4:3388118-3416046:+|nuORF	ENST00000504194.5_1_4:3388118-3416046:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	421.1436462402344	2	420.744911	839.475269	0.22381	9.4169E-05	-1.1801	-0.00049652	-0.95628	-0.00040235	420.7435919673948	106.41	1.9402	106.41	105.55	107.49	0					76	37	4	0	0	0	0.76654	1	38858	38858		15.847	3.3156	1	5921300			31867	6388	23066	23234	31099	31099					0.04910997494482672
LLQDRLVSV	9	Unmodified	_LLQDRLVSV_					0	0	0		nc|ENSG00000105559|Q9H4M7-2|PLEKHA4;ENSG00000105559|ENST00000263265|PLEKHA4	nc|ENSG00000105559|Q9H4M7-2|PLEKHA4	nc|ENSG00000105559|Q9H4M7-2|PLEKHA4	MULTI-SECPEP	A375_MHC_IP_R1	1	522.2161254882812	2	521.816399	1041.61824	-0.04229	-2.2068E-05	-0.43233	-0.0002256	-0.47462	-0.00024767	521.8161816757128	69.704	0.65748	69.704	69.377	70.034	0					25	12	3	0	0	0	0.11887	1	25268	25268		71.708	18.304	1	4984400			31868	2617	23067	23235	31100	31100					0.09910004885705348
LLQDRLVSV	9	Unmodified	_LLQDRLVSV_					0	0	0		nc|ENSG00000105559|Q9H4M7-2|PLEKHA4;ENSG00000105559|ENST00000263265|PLEKHA4	nc|ENSG00000105559|Q9H4M7-2|PLEKHA4	nc|ENSG00000105559|Q9H4M7-2|PLEKHA4	MULTI-SECPEP	A375_MHC_IP_R2	2	522.2161254882812	2	521.816399	1041.61824	-0.49306	-0.00025729	-0.28347	-0.00014792	-0.77653	-0.00040521	521.8162086159809	68.81	0.65937	69.546	69.272	69.932	0.73511					27	12	3	0	0	0	0.058501	1	26060	26060		87.258	20.802	1	5725200			31869	2617	23067	23235	31101	31101					0.09910004885705348
LLQEEEQQV	9	Unmodified	_LLQEEEQQV_					0	0	0			REV__ENSG00000159450|ENST00000614923|TCHH	REV__ENSG00000159450|ENST00000614923|TCHH	MSMS	A375_MHC_IP_R1	1	558.2301025390625	2	558.282586	1114.55062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.62	1	133.62	133.12	134.12	0								0	0	0	0.15486	1	51527	51527		13.508	0.46542	1		+		31870	20121	23068	23236	31102	31102					-0.0020748983574776503
LLQEENVI	8	Unmodified	_LLQEENVI_					0	0	0		ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	MULTI-SECPEP	A375_MHC_IP_R1	1	956.8729858398438	1	957.525138	956.517862	0.055734	5.3367E-05	-0.0047801	-4.5771E-06	0.050954	4.879E-05	957.5250566506489	99.35	0.40689	99.35	99.117	99.524	0					10	7	2	0	0	0	0.90224	1	36477	36477		26.341	0	1	1484200			31871	6825	23069	23237	31103	31103					0.03786347832055981
LLQERWAR	8	Unmodified	_LLQERWAR_					0	0	0			REV__ENST00000449870.5_2_19:10801619-10802189:+|nuORF	REV__ENST00000449870.5_2_19:10801619-10802189:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	536.4393920898438	2	536.306532	1070.59851	-0.74123	-0.00039753	-3.6717	-0.0019691	-4.4129	-0.0023667	536.3044047997726	47.8	0.45472	48.561	48.378	48.833	0.76127					13	8	2	0	0	0	0.77488	1	17907	17907		13.508	1.2672	1	1206800	+		31872	24880	23070	23238	31104	31104					0.06603673665608767
LLQESSIFY	9	Unmodified	_LLQESSIFY_					0	0	0		tr|U7T5X0|U7T5X0_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00002PE=4SV=1	tr|U7T5X0|U7T5X0_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00002PE=4SV=1	tr|U7T5X0|U7T5X0_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00002PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	550.6867065429688	2	550.28714	1098.55973	-0.81753	-0.00044988	0.08914	4.9053E-05	-0.72839	-0.00040083	550.2871238161048	68.336	0.81203	68.336	68.057	68.869	0					30	15	3	0	0	0	0.48845	1	24762	24762		39.95	26.044	1	6453500			31873	30035	23071	23239	31105	31105					0.01438903520556778
LLQEVEHQL	9	Unmodified	_LLQEVEHQL_					0	0	0		TRIM37|p.Q791Lfs*6|1|0.17|ENSG00000108395|chr17:59017310-59017311|-/GACA|frameshift_variant;nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;ENSG00000108395|ENST00000262294|TRIM37;ENST00000582852.1_1_17:57141714-57157166:-|nuORF	TRIM37|p.Q791Lfs*6|1|0.17|ENSG00000108395|chr17:59017310-59017311|-/GACA|frameshift_variant	TRIM37|p.Q791Lfs*6|1|0.17|ENSG00000108395|chr17:59017310-59017311|-/GACA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	555.2028198242188	2	554.803488	1107.59242	-0.55692	-0.00030898	0.25592	0.00014198	-0.30101	-0.000167	554.8036776403748	60.422	0.40761	60.422	60.21	60.618	0					11	7	2	0	0	0	0.074405	1	21766	21766		70.332	34.288	1	1729400			31874	2798	23072	23240	31106	31106					0.0429311064342528
LLQEVEHQL	9	Unmodified	_LLQEVEHQL_					0	0	0		TRIM37|p.Q791Lfs*6|1|0.17|ENSG00000108395|chr17:59017310-59017311|-/GACA|frameshift_variant;nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;ENSG00000108395|ENST00000262294|TRIM37;ENST00000582852.1_1_17:57141714-57157166:-|nuORF	TRIM37|p.Q791Lfs*6|1|0.17|ENSG00000108395|chr17:59017310-59017311|-/GACA|frameshift_variant	TRIM37|p.Q791Lfs*6|1|0.17|ENSG00000108395|chr17:59017310-59017311|-/GACA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	555.2027587890625	2	554.803488	1107.59242	-1.1536	-0.00064004	0.18352	0.00010182	-0.97012	-0.00053823	554.803447132041	59.642	0.55592	60.389	60.148	60.704	0.74714					15	10	2	0	0	0	0.27742	1	22589	22589		43.772	7.6454	1	1904800			31875	2798	23072	23240	31107	31107					0.0429311064342528
LLQFEKTEE	9	Unmodified	_LLQFEKTEE_					0	0	0			REV__nc|ENSG00000128585|Q9UL63-2|MKLN1	REV__nc|ENSG00000128585|Q9UL63-2|MKLN1	MULTI-SECPEP	A375_MHC_IP_R1	1	379.9483947753906	3	379.532645	1135.5761	0.075144	2.852E-05	1.7004	0.00064536	1.7755	0.00067388	379.5334336588456	41.771	0.41035	41.771	41.47	41.88	0					12	7	2	0	0	0	0.63327	1	14371	14371		17.443	9.4972	1	793530	+		31876	18455	23073	23241	31108	31108					0.01373984686665608
LLQGKEQPL	9	Unmodified	_LLQGKEQPL_					0	0	0		ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;ATP1A3|p.D521N|1|0.17|ENSG00000105409|chr19:41978675-41978675|C/T|missense_variant	ENSG00000105409|ENST00000648268|ATP1A3	ENSG00000105409|ENST00000648268|ATP1A3	MULTI-SECPEP	A375_MHC_IP_R1	1	513.6851196289062	2	513.303124	1024.5917	-0.049875	-2.5601E-05	-0.42949	-0.00022046	-0.47937	-0.00024606	513.3028730645377	69.757	0.50536	69.757	69.427	69.933	0					17	9	2	0	0	0	0.14572	1	25356	25356		53.833	32.296	1	15508000			31877	2604	23074	23242	31109	31109					0.0803831599437217
LLQGYRIY	8	Unmodified	_LLQGYRIY_					0	0	0		nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENSG00000146555|ENST00000404826|SDK1;ENST00000476701.5_1_7:4169443-4308379:+|nuORF;ENST00000481856.1_1_7:4213871-4218865:+|nuORF	nc|ENSG00000146555|Q7Z5N4-3|SDK1	nc|ENSG00000146555|Q7Z5N4-3|SDK1	MULTI-SECPEP	A375_MHC_IP_R1	1	513.6425170898438	2	513.292559	1024.57057	-0.69788	-0.00035822	-0.19844	-0.00010186	-0.89632	-0.00046007	513.2922362670171	85.509	0.5069	85.509	85.21	85.717	0					14	9	2	0	0	0	0.90224	1	31267	31267		19.439	4.8573	1	1231200			31878	5628	23075	23243	31110	31110					0.05926350685513171
LLQGYRIY	8	Unmodified	_LLQGYRIY_					0	0	0		nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENSG00000146555|ENST00000404826|SDK1;ENST00000476701.5_1_7:4169443-4308379:+|nuORF;ENST00000481856.1_1_7:4213871-4218865:+|nuORF	nc|ENSG00000146555|Q7Z5N4-3|SDK1	nc|ENSG00000146555|Q7Z5N4-3|SDK1	MULTI-MATCH	A375_MHC_IP_R2	2		2	513.292559	1024.57057	-0.65255	-0.00033495	-0.49973	-0.00025651	-1.1523	-0.00059146	513.2923609437424	84.525	0.45415	85.261	85.069	85.523	0.73601	-0.12402	-4.4408E-05	NaN	13.508	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1120600			31879	5628	23075	23243							0.05926350685513171
LLQIRAVRKKP	11	Unmodified	_LLQIRAVRKKP_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MSMS	A375_MHC_IP_R1	1	441.6974182128906	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.064	1	18.064	17.564	18.564	0								0	0	0	0.16358	1	4280	4280		0.094841	0.011491	1				31880	2398	23076	23244	31111	31111					0.22417277055819795
LLQKIKTNK	9	Unmodified	_LLQKIKTNK_					0	0	0			REV__ENSG00000135968|ENST00000309863|GCC2	REV__ENSG00000135968|ENST00000309863|GCC2	MULTI-MSMS	A375_MHC_IP_R2	2	362.6012878417969	3	362.572886	1084.69683	-0.58796	-0.00021318	-0.019788	-7.1747E-06	-0.60775	-0.00022035	362.5728628347873	36.683	0.45825	37.454	37.258	37.716	0.7709					13	8	2	0	0	0	0.74768	1	13487	13487		2.7352	0.23671	1	1846800	+		31881	18905	23077	23245	31112	31112					0.1578685719080113
LLQKIRHKEG	10	Unmodified	_LLQKIRHKEG_					0	0	0			REV__ENSG00000139174|ENST00000345127|PRICKLE1	REV__ENSG00000139174|ENST00000345127|PRICKLE1	MULTI-SECPEP	A375_MHC_IP_R1	1	611.774169921875	2	611.374946	1220.73534	-0.67143	-0.00041049	-0.46387	-0.0002836	-1.1353	-0.00069409	611.3745678195992	139.39	0.51001	139.39	139.27	139.78	0					21	9	3	0	0	0	0.94897	1	53581	53581		1.4819	0	1	2967600	+		31882	19137	23078	23246	31113	31113					0.13380162825296793
LLQKLTAL	8	Unmodified	_LLQKLTAL_					0	0	0		ENST00000310653.10_2_11:73388880-73388949:-|nuORF	ENST00000310653.10_2_11:73388880-73388949:-|nuORF	ENST00000310653.10_2_11:73388880-73388949:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	450.6997375488281	2	450.299853	898.585153	-0.085828	-3.8648E-05	-0.14733	-6.6343E-05	-0.23316	-0.00010499	450.2997360953042	43.919	0.45421	44.688	44.48	44.934	0.76909					15	8	2	0	0	0	0.95423	1	16422	16422		18.135	0	1	2209500			31883	10622	23079	23247	31114	31114					0.13180422833636385
LLQKQNGHF	9	Unmodified	_LLQKQNGHF_					0	0	0			REV__ENST00000261520.8_1_15:60715875-60720733:-|nuORF	REV__ENST00000261520.8_1_15:60715875-60720733:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	362.6205139160156	3	362.201452	1083.58253	-0.46308	-0.00016773	-0.13013	-4.7133E-05	-0.59321	-0.00021486	362.20113882875654	38.712	0.20575	39.486	39.351	39.556	0.77451					5	3	2	0	0	0	0.74651	1	14237	14237		5.2969	0	1	342850	+		31884	23190	23080	23248	31115	31115					0.04407967428710435
LLQKTEAF	8	Unmodified	_LLQKTEAF_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-SECPEP	A375_MHC_IP_R2	2	475.6363525390625	2	475.271293	948.528032	-0.4428	-0.00021045	-0.86204	-0.0004097	-1.3048	-0.00062015	475.27210945781405	69.285	0.40454	70.019	69.829	70.233	0.73421					10	7	2	0	0	0	0.95423	1	26306	26306		12.532	5.2423	1	1270000			31885	5030	23081	23249	31116	31116					0.05170955557287016
LLQLGYIRYMH	11	Unmodified	_LLQLGYIRYMH_					0	0	0			REV__ENSG00000170881|ENST00000303545|RNF139	REV__ENSG00000170881|ENST00000303545|RNF139	MSMS	A375_MHC_IP_R2	2	469.4904479980469	3	469.591952	1405.75403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.994	1	79.739	79.239	80.239	0.74474								0	0	0	0.16332	1	29977	29977		1.4551	0	1		+		31886	21028	23082	23250	31117	31117					0.06737956404845136
LLQLSIEDV	9	Unmodified	_LLQLSIEDV_					0	0	0		ENSG00000116544|ENST00000373347|DLGAP3	ENSG00000116544|ENST00000373347|DLGAP3	ENSG00000116544|ENST00000373347|DLGAP3	MULTI-MSMS	A375_MHC_IP_R2	2	515.1901245117188	2	515.294965	1028.57538	-0.71627	-0.00036909	0.0076868	3.9609E-06	-0.70858	-0.00036513	515.2948581766598	78.515	0.9651	79.26	78.728	79.693	0.74473					42	18	4	0	0	0	0.22528	1	29631	29631		36.127	0	1	33457000			31887	3404	23083	23251	31118	31118					0.062231900375991245
LLQNFSVSL	9	Unmodified	_LLQNFSVSL_					0	0	0		ENST00000486271.5_1_3:112732082-112732223:-|nuORF	ENST00000486271.5_1_3:112732082-112732223:-|nuORF	ENST00000486271.5_1_3:112732082-112732223:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	510.9992980957031	2	510.78985	1019.56515	-0.6476	-0.00033079	0.050929	2.6014E-05	-0.59667	-0.00030477	510.789931009498	48.096	0.40197	48.858	48.582	48.984	0.76128					11	7	2	0	0	0	0.54812	1	18051	18051		24.991	0	1	2114300			31888	12581	23084	23252	31119	31119					0.056146271030456774
LLQQPLVKK	9	Unmodified	_LLQQPLVKK_					0	0	0		nc|ENSG00000166535|A8K2U0-2|A2ML1;ENSG00000166535|ENST00000299698|A2ML1;A2ML1|p.V1394I|1|0.29|ENSG00000166535|chr12:8869162-8869162|G/A|missense_variant;A2ML1|p.E1395K|1|0.27|ENSG00000166535|chr12:8869165-8869165|G/A|missense_variant	nc|ENSG00000166535|A8K2U0-2|A2ML1	nc|ENSG00000166535|A8K2U0-2|A2ML1	MULTI-SECPEP	A375_MHC_IP_R1	1	355.4599609375	3	356.237615	1065.69102	-0.07971	-2.8396E-05	-0.41591	-0.00014816	-0.49562	-0.00017656	356.2375750571796	40.095	0.4079	40.095	39.896	40.304	0					13	7	2	0	0	0	0.81166	1	13788	13788		2.7352	0.82882	1	1566300			31889	7087	23085	23253	31120	31120					0.1607975867912046
LLQQTIAAL	9	Unmodified	_LLQQTIAAL_					0	0	0		nc|ENSG00000137962|Q52LW3-2|ARHGAP29;ENSG00000137962|ENST00000260526|ARHGAP29	nc|ENSG00000137962|Q52LW3-2|ARHGAP29	nc|ENSG00000137962|Q52LW3-2|ARHGAP29	MULTI-SECPEP	A375_MHC_IP_R1	1	486.19976806640625	2	485.800217	969.585882	-0.067371	-3.2729E-05	-0.89135	-0.00043302	-0.95872	-0.00046575	485.79978906178206	44.254	0.257	44.254	44.113	44.37	0					6	4	2	0	0	0	0.65246	1	15459	15459		15.847	0	1	1427800			31890	4939	23086	23254	31121	31121					0.09987217482705546
LLQRIILL	8	Unmodified	_LLQRIILL_					0	0	0		ENST00000380650.4_1_12:48064019-48064073:-|nuORF	ENST00000380650.4_1_12:48064019-48064073:-|nuORF	ENST00000380650.4_1_12:48064019-48064073:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	491.1742248535156	2	491.344595	980.674637	-0.3759	-0.0001847	0.24506	0.00012041	-0.13084	-6.4287E-05	491.3445609818161	58.386	0.40522	58.386	58.177	58.582	0					11	7	2	0	0	0	0.97144	1	20953	20953		9.3474	0	1	899140			31891	11355	23087	23255	31122	31122					0.18352677513041726
LLQRRHKDRLI	11	Unmodified	_LLQRRHKDRLI_					0	0	0			REV__nc|ENSG00000156299|Q13009-2|TIAM1	REV__nc|ENSG00000156299|Q13009-2|TIAM1	MSMS	A375_MHC_IP_R1	1	724.235107421875	2	724.452051	1446.88955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.54	1	105.54	105.04	106.04	0								0	0	0	0.1624	1	38745	38745		6.2058	0	1		+		31892	19975	23088	23256	31123	31123					0.18397992310701738
LLQRRRKWRS	10	Unmodified	_LLQRRRKWRS_					0	0	0		ENSG00000142182|ENST00000628202|DNMT3L;nc|ENSG00000142182|Q9UJW3-2|DNMT3L	ENSG00000142182|ENST00000628202|DNMT3L	ENSG00000142182|ENST00000628202|DNMT3L	MULTI-MSMS	A375_MHC_IP_R1	1	701.9742431640625	2	699.931286	1397.84802	-0.96522	-0.00067559	-0.4757	-0.00033296	-1.4409	-0.0010085	699.9307612240314	149.16	2.45	149.16	147.55	150	0					281	94	5	0	0	0	0.72645	1	57042	57042		0.45834	0	1	2976900			31893	5291	23089	23257	31124	31124					0.16500856342008774
LLQSLEKIK	9	Unmodified	_LLQSLEKIK_					0	0	0			REV__ENSG00000234511|ENST00000593851|C5orf58	REV__ENSG00000234511|ENST00000593851|C5orf58	MULTI-MSMS	A375_MHC_IP_R1	1	537.3674926757812	2	536.342249	1070.66995	-0.69215	-0.00037123	0.14105	7.5651E-05	-0.5511	-0.00029558	536.342255091166	20.054	1.3226	20.054	19.674	20.997	0					69	25	5	0	0	0	0.59266	1	5198	5198		21.747	0	1	127550000	+		31894	22752	23090	23258	31125	31125					0.1374374857962266
LLQTSLHT	8	Unmodified	_LLQTSLHT_					0	0	0			REV__ENSG00000198203|ENST00000251481|SULT1C2	REV__ENSG00000198203|ENST00000251481|SULT1C2	MULTI-SECPEP	A375_MHC_IP_R2	2	457.16046142578125	2	456.761092	911.507631	-0.072648	-3.3183E-05	-1.2129	-0.000554	-1.2855	-0.00058718	456.76050889260733	143.64	0.30206	143.66	143.54	143.84	0.024414					7	5	2	0	0	0	0.972	1	56153	56153		2.5775	0	1	850990	+		31895	22352	23091	23259	31126	31126					0.04833784897471105
LLQVAGETVTL	11	Unmodified	_LLQVAGETVTL_					0	0	0		ENSG00000144596|ENST00000621039|GRIP2;nc|ENSG00000144596|Q9C0E4-2|GRIP2	ENSG00000144596|ENST00000621039|GRIP2	ENSG00000144596|ENST00000621039|GRIP2	MULTI-MSMS	A375_MHC_IP_R1	1	382.29248046875	3	381.892173	1142.65469	0.18249	6.969E-05	1.047	0.00039985	1.2295	0.00046954	381.8925395042341	27.707	0.40357	27.707	27.533	27.937	0					13	7	2	0	0	0	0.72851	1	8462	8462		10.315	0.77126	1	2170000			31896	5497	23092	23260	31127	31127					0.08906836991764067
LLQVLIPFSLY	11	Unmodified	_LLQVLIPFSLY_					0	0	0		ATP10B|p.I381F|1|0.34|ENSG00000118322|chr5:160634594-160634594|T/A|missense_variant	ATP10B|p.I381F|1|0.34|ENSG00000118322|chr5:160634594-160634594|T/A|missense_variant	ATP10B|p.I381F|1|0.34|ENSG00000118322|chr5:160634594-160634594|T/A|missense_variant	MSMS	A375_MHC_IP_R1	1	653.4964599609375	2	653.394482	1304.77441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.37	1	105.37	104.87	105.87	0								0	0	0	0.1624	1	38682	38682		6.2058	0.47393	1				31897	201	23093	23261	31128	31128					0.1342145033631823
LLQVPITIL	9	Unmodified	_LLQVPITIL_					0	0	0			REV__ENSG00000130943|ENST00000253255|PKDREJ	REV__ENSG00000130943|ENST00000253255|PKDREJ	MULTI-SECPEP	A375_MHC_IP_R2	2	505.7360534667969	2	505.336436	1008.65832	-0.51307	-0.00025927	-0.52001	-0.00026278	-1.0331	-0.00052205	505.33638881186835	137.65	0.25284	137.73	137.61	137.86	0.083969					6	4	2	0	0	0	0.76187	1	54042	54042		3.9444	0	1	1015400	+		31898	18575	23094	23262	31129	31129					0.15433551556270686
LLRALRALV	9	Unmodified	_LLRALRALV_					0	0	0		ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	MULTI-SECPEP	A375_MHC_IP_R1	1	513.2531127929688	2	512.853119	1023.69168	-0.30741	-0.00015766	-0.36905	-0.00018927	-0.67646	-0.00034692	512.8530757159025	78.555	0.45509	78.555	78.403	78.859	0					17	8	3	0	0	0	0.67221	1	28682	28682		13.508	0	1	2576700			31899	4039	23095	23263	31130	31130					0.18078598118847822
LLRALRRDL	9	Unmodified	_LLRALRRDL_					0	0	0		ENSG00000176978|ENST00000371579|DPP7;ENST00000485456.5_1_9:140007511-140008978:-|nuORF	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MULTI-MSMS	A375_MHC_IP_R1	1	376.58935546875	3	375.912013	1124.71421	0.45313	0.00017034	-0.20014	-7.5234E-05	0.253	9.5104E-05	375.91193655788305	40.494	0.40633	40.494	40.254	40.66	0					16	7	3	0	0	0	0.69317	1	13958	13958		7.609	0.50723	1	4310200			31900	8048	23096	23264	31131	31131					0.15684197516452514
LLRASRPAAL	10	Unmodified	_LLRASRPAAL_					0	0	0		ENSG00000236609|ENST00000457543|ZNF853	ENSG00000236609|ENST00000457543|ZNF853	ENSG00000236609|ENST00000457543|ZNF853	MULTI-SECPEP	A375_MHC_IP_R1	1	355.94525146484375	3	356.560981	1066.66111	0.40941	0.00014598	-0.58792	-0.00020963	-0.17851	-6.3649E-05	356.56069048343124	45.271	0.50454	45.271	45.081	45.585	0					14	9	2	0	0	0	0.94651	1	15779	15779		1.7423	0.54893	1	893800			31901	9753	23097	23265	31132	31132					0.13044819733772783
LLRAVKFVI	9	Unmodified	_LLRAVKFVI_					0	0	0			REV__ENSG00000278685|ENST00000615129|IQCA1L	REV__ENSG00000278685|ENST00000615129|IQCA1L	MULTI-SECPEP	A375_MHC_IP_R1	1	354.28173828125	3	353.574339	1057.70119	0.24987	8.8348E-05	-0.66676	-0.00023575	-0.41689	-0.0001474	353.57402246570956	48.225	0.20323	48.225	48.071	48.274	0					5	3	2	0	0	0	0.81039	1	16977	16977		1.1933	0	1	443920	+		31902	22982	23098	23266	31133	31133					0.17464366404374232
LLRDAVEQPF	10	Unmodified	_LLRDAVEQPF_					0	0	0			REV__ENSG00000162378|ENST00000294353|ZYG11B	REV__ENSG00000162378|ENST00000294353|ZYG11B	MSMS	A375_MHC_IP_R2	2	396.5840148925781	3	396.552151	1186.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.808	1	34.561	34.061	35.061	0.75225								0	0	0	0.15411	1	12140	12140		7.4771	1.2427	1		+		31903	20245	23099	23267	31134	31134					0.04877086051783408
LLRDEELIL	9	Unmodified	_LLRDEELIL_					0	0	0			REV__nc|ENSG00000070366|Q86US8-3|SMG6	REV__nc|ENSG00000070366|Q86US8-3|SMG6	MULTI-SECPEP	A375_MHC_IP_R1	1	557.72900390625	2	557.329339	1112.64412	-0.61312	-0.00034171	-0.48482	-0.0002702	-1.0979	-0.00061191	557.3294235791001	58.659	0.50778	58.659	58.379	58.887	0					18	9	3	0	0	0	0.16237	1	21077	21077		69.105	12.928	1	5364100	+		31904	16572	23100	23268	31135	31135					0.0923085433732922
LLRDVDEWS	9	Unmodified	_LLRDVDEWS_					0	0	0			REV__BRD1|p.G784Afs*109|1|0.19|ENSG00000100425|chr22:49794042-49794042|C/-|frameshift_variant	REV__BRD1|p.G784Afs*109|1|0.19|ENSG00000100425|chr22:49794042-49794042|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	567.1851196289062	2	566.785296	1131.55604	-0.30624	-0.00017357	-0.16823	-9.5353E-05	-0.47447	-0.00026893	566.7850223481265	62.122	0.40894	62.122	61.891	62.3	0					12	7	2	0	0	0	0.38578	1	22439	22439		34.402	0	1	4492300	+		31905	15523	23101	23269	31136	31136					-0.004477662532735849
LLRDVDEWS	9	Unmodified	_LLRDVDEWS_					0	0	0			REV__BRD1|p.G784Afs*109|1|0.19|ENSG00000100425|chr22:49794042-49794042|C/-|frameshift_variant	REV__BRD1|p.G784Afs*109|1|0.19|ENSG00000100425|chr22:49794042-49794042|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	566.747314453125	2	566.785296	1131.55604	-0.71413	-0.00040476	0.14557	8.2508E-05	-0.56855	-0.00032225	566.7852235152744	61.318	0.50343	62.063	61.869	62.372	0.74504					14	8	2	0	0	0	0.32092	1	23222	23222		29.082	0	1	3076600	+		31906	15523	23101	23269	31137	31137					-0.004477662532735849
LLREAYTVEW	10	Unmodified	_LLREAYTVEW_					0	0	0		MGAM|p.G947R|1|0.48|ENSG00000257335|chr7:142052327-142052327|G/A|missense_variant	MGAM|p.G947R|1|0.48|ENSG00000257335|chr7:142052327-142052327|G/A|missense_variant	MGAM|p.G947R|1|0.48|ENSG00000257335|chr7:142052327-142052327|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	640.3305053710938	2	640.337695	1278.66084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.09	1	106.85	106.35	107.35	0.75977								0	0	0	0.15308	1	40110	40110		10.824	1.4408	1				31907	14381	23102	23270	31138	31138					0.03265355223265942
LLREEREEKRR	11	Unmodified	_LLREEREEKRR_					0	0	0		ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	MULTI-MSMS	A375_MHC_IP_R1	1	506.3579406738281	3	505.290101	1512.84847	-0.37669	-0.00019034	1.3456	0.00067991	0.9689	0.00048957	505.624118491596	73.729	1.2675	73.729	73.132	74.4	0					52	24	4	0	0	0	0.73881	1	26870	26870		0.50596	0	1	4354500			31908	6372	23103	23271	31139	31139					0.11256186480522956
LLREKVEFL	9	Unmodified	_LLREKVEFL_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	A375_MHC_IP_R1	1	383.6354064941406	3	382.900891	1145.68084	0.23637	9.0506E-05	0.21804	8.3489E-05	0.45441	0.00017399	382.9008633741255	64.915	0.50574	64.915	64.7	65.206	0					20	9	3	0	0	0	0.18338	1	23510	23510		39.213	4.9913	1	2495700			31909	1764	23104	23272	31140	31140					0.11383150953906807
LLRFRILPD	9	Unmodified	_LLRFRILPD_					0	0	0		ENSG00000186526|ENST00000612078|CYP4F8	ENSG00000186526|ENST00000612078|CYP4F8	ENSG00000186526|ENST00000612078|CYP4F8	MSMS	A375_MHC_IP_R1	1	571.91796875	2	571.855858	1141.69716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.919	1	59.919	59.419	60.419	0								0	0	0	0.15486	1	21564	21564		12.532	4.6214	1				31910	8758	23105	23273	31141	31141					0.13198276910657114
LLRGEFGPL	9	Unmodified	_LLRGEFGPL_					0	0	0			REV__ENST00000463808.1_1_16:2122597-2124590:+|nuORF	REV__ENST00000463808.1_1_16:2122597-2124590:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.8128662109375	2	501.292559	1000.57057	-0.4837	-0.00024247	0.22787	0.00011423	-0.25582	-0.00012824	501.2925687150028	65.329	1.271	65.329	64.851	66.122	0					56	24	4	0	0	0	0.5339	1	23481	23481		18.135	1.1927	1	22471000	+		31911	25003	23106	23274	31142	31142					0.07030350685522535
LLRGRLPA	8	Unmodified	_LLRGRLPA_					0	0	0		ENST00000294599.8_1_1:3426447-3426525:-|nuORF	ENST00000294599.8_1_1:3426447-3426525:-|nuORF	ENST00000294599.8_1_1:3426447-3426525:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	448.69512939453125	2	448.295436	894.57632	-0.17435	-7.816E-05	-0.22885	-0.00010259	-0.4032	-0.00018075	448.2952452665539	76.431	0.40356	76.431	76.219	76.622	0					13	7	2	0	0	0	0.97144	1	27863	27863		9.3474	0	1	1416200			31912	10490	23107	23275	31143	31143					0.12481493987831982
LLRGRPVA	8	Unmodified	_LLRGRPVA_					0	0	0			REV__ENSG00000108784|ENST00000225927|NAGLU	REV__ENSG00000108784|ENST00000225927|NAGLU	MULTI-SECPEP	A375_MHC_IP_R1	1	440.6668395996094	2	441.287611	880.56067	-0.45346	-0.0002001	-0.69449	-0.00030647	-1.1479	-0.00050658	441.2872550046128	142.35	0.40332	142.35	142.13	142.54	0					10	7	2	0	0	0	0.972	1	54635	54635		0	0	1	626780	+		31913	17553	23108	23276	31144	31144					0.11561207470788304
LLRGRPVA	8	Unmodified	_LLRGRPVA_					0	0	0			REV__ENSG00000108784|ENST00000225927|NAGLU	REV__ENSG00000108784|ENST00000225927|NAGLU	MULTI-MATCH	A375_MHC_IP_R2	2		2	441.287611	880.56067	-0.148	-6.5311E-05	-0.36177	-0.00015964	-0.50977	-0.00022495	441.28722833448523	142.41	0.50938	142.44	142.13	142.64	0.030731	0.046939	0.00019031	NaN	0	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	586140	+		31914	17553	23108	23276							0.11561207470788304
LLRHHPFL	8	Unmodified	_LLRHHPFL_					0	0	0		ENSG00000284395|ENST00000640283|PERCC1	ENSG00000284395|ENST00000640283|PERCC1	ENSG00000284395|ENST00000640283|PERCC1	MSMS	A375_MHC_IP_R1	1	516.7095947265625	2	516.808711	1031.60287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.18	1	132.18	131.68	132.68	0								0	0	0	0.16876	1	50964	50964		17.087	2.2483	1				31915	10054	23109	23277	31145	31145					0.08833182879175183
LLRHRWRGRRG	11	Unmodified	_LLRHRWRGRRG_					0	0	0			REV__ENST00000371600.7_1_9:139937867-139938101:-|nuORF	REV__ENST00000371600.7_1_9:139937867-139938101:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	488.69586181640625	3	488.295743	1461.8654	-0.38391	-0.00018746	-0.071128	-3.4732E-05	-0.45504	-0.00022219	488.2956072591713	143.14	0.80891	143.17	142.69	143.5	0.030731					30	15	3	0	0	0	0.73934	1	55886	55886		0.094841	0.094841	1	3462100	+		31916	24044	23110	23278	31146	31146					0.15294196667628057
LLRIEDNSL	9	Unmodified	_LLRIEDNSL_					0	0	0		nc|ENSG00000174842|Q92990-2|GLMN;ENSG00000174842|ENST00000370360|GLMN	nc|ENSG00000174842|Q92990-2|GLMN	nc|ENSG00000174842|Q92990-2|GLMN	MULTI-SECPEP	A375_MHC_IP_R1	1	537.2030639648438	2	536.803488	1071.59242	-0.75777	-0.00040677	0.70571	0.00037883	-0.052059	-2.7945E-05	536.8035527779391	89.764	0.65812	89.764	89.526	90.184	0					28	12	4	0	0	0	0.053904	1	32982	32982		85.272	2.7427	1	2317900			31917	7908	23111	23279	31147	31147					0.05949110643427957
LLRIEDNSL	9	Unmodified	_LLRIEDNSL_					0	0	0		nc|ENSG00000174842|Q92990-2|GLMN;ENSG00000174842|ENST00000370360|GLMN	nc|ENSG00000174842|Q92990-2|GLMN	nc|ENSG00000174842|Q92990-2|GLMN	MULTI-SECPEP	A375_MHC_IP_R2	2	537.2029418945312	2	536.803488	1071.59242	-0.80248	-0.00043077	-0.13439	-7.2138E-05	-0.93687	-0.00050291	536.8032221383314	88.821	0.70581	89.553	89.279	89.985	0.7318					25	13	3	0	0	0	0.20645	1	33788	33788		56.177	0.6743	1	2934400			31918	7908	23111	23279	31148	31148					0.05949110643427957
LLRILFKND	9	Unmodified	_LLRILFKND_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MSMS	A375_MHC_IP_R2	2	566.749755859375	2	566.347866	1130.68118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.21	1	145.23	144.73	145.73	0.021408								0	0	0	0.15486	1	56698	56698		1.8442	0	1				31919	5536	23112	23280	31149	31149					0.12106570673768147
LLRILLFVV	9	Unmodified	_LLRILLFVV_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	A375_MHC_IP_R2	2	543.46533203125	2	543.375895	1084.73724	-0.72619	-0.00039459	-1.7128	-0.00093069	-2.439	-0.0013253	543.3746985985161	79.077	0.15161	79.821	79.744	79.896	0.74474					4	2	2	0	0	0	0.67372	1	30021	30021		9.3474	0	1	1181800	+		31920	21249	23113	23281	31150	31150					0.1982582358120908
LLRIVRMF	8	Unmodified	_LLRIVRMF_					0	0	0		ENSG00000085382|ENST00000262903|HACE1;nc|ENSG00000085382|Q8IYU2-4|HACE1	ENSG00000085382|ENST00000262903|HACE1	ENSG00000085382|ENST00000262903|HACE1	MULTI-MSMS	A375_MHC_IP_R1	1	1048.04931640625	1	1047.64957	1046.64229	-0.16208	-0.0001698	0.37654	0.00039448	0.21446	0.00022467	1047.6497076277433	137.46	0.20592	137.46	137.33	137.54	0					5	3	2	0	0	0	0.77717	1	52925	52925		5.2307	2.9279	1	2105500			31921	1810	23114	23282	31151	31151					0.12083566838396109
LLRIVRMF	8	Unmodified	_LLRIVRMF_					0	0	0		ENSG00000085382|ENST00000262903|HACE1;nc|ENSG00000085382|Q8IYU2-4|HACE1	ENSG00000085382|ENST00000262903|HACE1	ENSG00000085382|ENST00000262903|HACE1	MULTI-MATCH	A375_MHC_IP_R2	2		1	1047.64957	1046.64229	0.24208	0.00025361	-0.29624	-0.00031036	-0.054166	-5.6747E-05	1047.6491458356609	137.29	0.308	137.38	137.25	137.56	0.083969	-0.043229	-0.00026919	NaN	5.2307	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1758800			31922	1810	23114	23282							0.12083566838396109
LLRKQQTI	8	Unmodified	_LLRKQQTI_					0	0	0		ENSG00000173757|ENST00000293328|STAT5B;nc|ENSG00000126561|P42229-2|STAT5A;ENST00000468312.1_1_17:40370167-40384145:-|nuORF;ENSG00000126561|ENST00000590949|STAT5A	ENSG00000173757|ENST00000293328|STAT5B;ENSG00000126561|ENST00000590949|STAT5A	ENSG00000126561|ENST00000590949|STAT5A	MULTI-SECPEP	A375_MHC_IP_R1	1	500.71893310546875	2	500.319109	998.623664	-0.35275	-0.00017649	-0.032104	-1.6062E-05	-0.38485	-0.00019255	500.3190588652206	42.144	0.25152	42.144	41.982	42.233	0					11	4	3	0	0	0	0.86765	1	14621	14621		32.117	3.6301	1	2251900			31923	7827;4049	23115	23283	31152	31152					0.12429728468180201
LLRLLLLWMDR	11	Unmodified	_LLRLLLLWMDR_					0	0	0		ENST00000370589.6_1_1:85487759-85487828:-|nuORF	ENST00000370589.6_1_1:85487759-85487828:-|nuORF	ENST00000370589.6_1_1:85487759-85487828:-|nuORF	MSMS	A375_MHC_IP_R2	2	721.2734985351562	2	721.439232	1440.86391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.32	1	120.85	120.35	121.35	0.5321								0	0	0	0.16285	1	45904	45904		3.8763	0.59502	1				31924	11152	23116	23284	31153	31153					0.1611138174403095
LLRLLNKLTKW	11	Unmodified	_LLRLLNKLTKW_					0	0	0		nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	MSMS	A375_MHC_IP_R1	1	699.44384765625	2	699.453197	1396.89184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.07	1	100.07	99.572	100.57	0								0	0	0	0.1629	1	36774	36774		3.5965	0	1				31925	4147	23117	23285	31154	31154					0.2092702799577637
LLRLLRLYWLY	11	Unmodified	_LLRLLRLYWLY_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-SECPEP	A375_MHC_IP_R2	2	380.9457092285156	4	381.238062	1520.92314	-0.356	-0.00013572	1.0543	0.00040193	0.69828	0.00026621	381.2381045995179	20.524	1.117	21.134	20.399	21.516	0.61029					31	21	2	0	0	0	0.99625	1	6270	6270		7.4771	7.0225	1	2254200	+		31926	27313	23118	23286	31155	31155					0.18351601029894482
LLRLLRQL	8	Unmodified	_LLRLLRQL_					0	0	0		ENST00000555168.1_1_X:119271017-119378716:-|nuORF;nc|ENSG00000293328|Q8N9T2|NKAPP1	ENST00000555168.1_1_X:119271017-119378716:-|nuORF	ENST00000555168.1_1_X:119271017-119378716:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	513.252685546875	2	512.853119	1023.69168	-0.76195	-0.00039077	-0.20911	-0.00010724	-0.97106	-0.00049801	512.8530505384107	77.313	0.45833	78.056	77.807	78.265	0.74293					14	8	2	0	0	0	0.96296	1	29380	29380		10.183	0	1	2111000			31927	13428	23119	23287	31156	31156					0.18078598118836453
LLRLQPLV	8	Unmodified	_LLRLQPLV_					0	0	0			REV__ENST00000607074.1_1_6:170581571-170582066:+|nuORF	REV__ENST00000607074.1_1_6:170581571-170582066:+|nuORF	MSMS	A375_MHC_IP_R2	2	476.5980224609375	2	476.32112	950.627687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.106	1	97.862	97.362	98.362	0.75586								0	0	0	0.16876	1	36858	36858		5.7604	0	1		+		31928	26545	23120	23288	31157	31157					0.15039817961894641
LLRNTKHYIRR	11	Unmodified	_LLRNTKHYIRR_					0	0	0			REV__ENST00000539135.1_1_12:4358286-4385349:-|nuORF	REV__ENST00000539135.1_1_12:4358286-4385349:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	735.8428344726562	2	735.444226	1468.8739	-0.63367	-0.00046603	-0.33671	-0.00024763	-0.97038	-0.00071366	735.4435258013463	148.99	2.0797	149.01	147.81	149.89	0.018707					215	69	4	0	0	0	0.73906	1	57564	57564		0.26902	0	1	1230700	+		31929	25939	23121	23289	31158	31158					0.15821705793609908
LLRPLGPVAP	10	Unmodified	_LLRPLGPVAP_					0	0	0			REV__ENSG00000173976|ENST00000555633|RAX2	REV__ENSG00000173976|ENST00000555633|RAX2	MULTI-SECPEP	A375_MHC_IP_R2	2	517.23095703125	2	516.831852	1031.64915	-0.70281	-0.00036324	-0.80847	-0.00041784	-1.5113	-0.00078108	516.8314027642766	79.888	1.2154	80.632	79.796	81.011	0.74474					35	23	2	0	0	0	0.62479	1	30336	30336		28.487	0	1	3843000	+		31930	21256	23122	23290	31159	31159					0.13459202990588892
LLRPVAPLR	9	Unmodified	_LLRPVAPLR_					0	0	0		ENSG00000102981|ENST00000458121|PARD6A;nc|ENSG00000102981|Q9NPB6|PARD6A	ENSG00000102981|ENST00000458121|PARD6A	ENSG00000102981|ENST00000458121|PARD6A	MULTI-SECPEP	A375_MHC_IP_R2	2	517.066650390625	2	517.845294	1033.67603	-0.53854	-0.00027888	-0.38319	-0.00019843	-0.92173	-0.00047731	517.845001948168	149.97	0.35611	149.99	149.66	150.01	0.018265					54	30	2	0	0	0	0.8175	1	58144	58144		0.6015	0	1	143900			31931	2408	23123	23291	31160	31160					0.16054311601760674
LLRPVIDL	8	Unmodified	_LLRPVIDL_					0	0	0			REV__nc|ENSG00000101204|P43681-2|CHRNA4	REV__nc|ENSG00000101204|P43681-2|CHRNA4	MULTI-SECPEP	A375_MHC_IP_R1	1	470.204833984375	2	469.805303	937.596052	-0.070953	-3.3334E-05	-0.30695	-0.00014421	-0.3779	-0.00017754	469.80511039329235	112.21	0.50839	112.21	111.92	112.43	0					15	9	3	0	0	0	0.59711	1	41158	41158		53.576	2.7205	1	997650	+		31932	17149	23124	23292	31161	31161					0.12475825207945945
LLRPVIDL	8	Unmodified	_LLRPVIDL_					0	0	0			REV__nc|ENSG00000101204|P43681-2|CHRNA4	REV__nc|ENSG00000101204|P43681-2|CHRNA4	MULTI-SECPEP	A375_MHC_IP_R2	2	470.2054748535156	2	469.805303	937.596052	-0.42701	-0.00020061	-0.22071	-0.00010369	-0.64772	-0.0003043	469.8052274288885	111.14	0.41066	111.88	111.65	112.06	0.73692					13	7	2	0	0	0	0.8824	1	41946	41946		23.148	5.0134	1	1419100	+		31933	17149	23124	23292	31162	31162					0.12475825207945945
LLRQLPQRW	9	Unmodified	_LLRQLPQRW_					0	0	0			REV__ENSG00000198326|ENST00000380585|TMEM239	REV__ENSG00000198326|ENST00000380585|TMEM239	MSMS	A375_MHC_IP_R2	2	403.943359375	3	403.912013	1208.71421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.217	1	32.954	32.454	33.454	0.73692								0	0	0	0.15486	1	11445	11445		5.2969	2.2246	1		+		31934	22362	23125	23293	31163	31163					0.11820197516453845
LLRRAHEP	8	Unmodified	_LLRRAHEP_					0	0	0			REV__ENST00000546390.1_1_12:52473886-52501266:+|nuORF	REV__ENST00000546390.1_1_12:52473886-52501266:+|nuORF	MSMS	A375_MHC_IP_R2	2	496.3586120605469	2	496.293425	990.572297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.17	1	142.2	141.7	142.7	0.030731								0	0	0	0.16876	1	55582	55582		2.5775	0	1		+		31935	25998	23126	23294	31164	31164					0.0766340449412155
LLRRLKKKDK	10	Unmodified	_LLRRLKKKDK_					0	0	0			REV__ENSG00000196284|ENST00000371459|SUPT3H	REV__ENSG00000196284|ENST00000371459|SUPT3H	MSMS	A375_MHC_IP_R2	2	649.2142333984375	2	649.443163	1296.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.14	1	103.91	103.41	104.41	0.76428								0	0	0	0.15628	1	39066	39066		0.45834	0	1		+		31936	22179	23127	23295	31165	31165					0.23521277055806422
LLRRLLQR	8	Unmodified	_LLRRLLQR_					0	0	0		ENST00000561859.5_1_16:23555925-23568664:-|nuORF;ENSG00000103356|ENST00000449606|EARS2;nc|ENSG00000103356|Q5JPH6-2|EARS2	ENST00000561859.5_1_16:23555925-23568664:-|nuORF	ENST00000561859.5_1_16:23555925-23568664:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1068.2720947265625	1	1067.71601	1066.70873	0.058918	6.2908E-05	0.52671	0.00056237	0.58562	0.00062528	1068.7168674801655	130.56	0.9626	130.77	129.94	130.91	0.21419					21	18	2	0	0	0	0.972	1	51044	51044		0.69038	0	1	10698000			31937	2447	23128	23296	31166	31166					0.17804518724642548
LLRRRDDPNK	10	Unmodified	_LLRRRDDPNK_					0	0	0			REV__SAMSN1|p.E287K|1|0.33|ENSG00000155307|chr21:14498502-14498502|C/T|missense_variant	REV__SAMSN1|p.E287K|1|0.33|ENSG00000155307|chr21:14498502-14498502|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	641.8630981445312	2	641.87056	1281.72657	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.083	1	92.822	92.322	93.322	0.73902								0	0	0	0.15464	1	35020	35020		10.074	5.7447	1		+		31938	27912	23129	23297	31167	31167					0.09697189188841548
LLRRRRGRRRR	11	Unmodified	_LLRRRRGRRRR_					0	0	0			REV__ENST00000418710.2_1_7:20824815-20825286:-|nuORF	REV__ENST00000418710.2_1_7:20824815-20825286:-|nuORF	MSMS	A375_MHC_IP_R1	1	776.0311889648438	2	776.011799	1550.00904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.91	1	126.91	126.41	127.41	0								0	0	0	0.16353	1	48545	48545		0.35063	0.35063	1		+		31939	24560	23130	23298	31168	31168					0.2560404349860619
LLRRRWRTRWG	11	Unmodified	_LLRRRWRTRWG_					0	0	0			REV__ENST00000431489.5_1_2:62933068-62933182:+|nuORF	REV__ENST00000431489.5_1_2:62933068-62933182:+|nuORF	MSMS	A375_MHC_IP_R1	1	778.4651489257812	2	778.463284	1554.91202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.569	1	85.569	85.069	86.069	0								0	0	0	0.16353	1	31361	31361		0.35063	0.35063	1		+		31940	24705	23131	23299	31169	31169					0.15675636498940548
LLRSKDWW	8	Unmodified	_LLRSKDWW_					0	0	0			REV__ENSG00000007202|ENST00000528896|BLTP2	REV__ENSG00000007202|ENST00000528896|BLTP2	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1685180664062	2	552.303458	1102.59236	-0.73007	-0.00040322	-1.1457	-0.00063277	-1.8758	-0.001036	552.8043095779844	105	0.55998	105.77	105.56	106.12	0.76308					16	10	2	0	0	0	0.95423	1	39783	39783		12.532	0.89125	1	1361500	+		31941	16151	23132	23300	31170	31170					0.04517155434086817
LLRSQHLHHWA	11	Unmodified	_LLRSQHLHHWA_					0	0	0		ENST00000301761.6_1_11:61214076-61214163:+|nuORF	ENST00000301761.6_1_11:61214076-61214163:+|nuORF	ENST00000301761.6_1_11:61214076-61214163:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	699.77978515625	2	699.381094	1396.74764	-1.0145	-0.0007095	-0.47632	-0.00033313	-1.4908	-0.0010426	699.3803294344555	67.972	0.40433	67.972	67.754	68.159	0					14	7	3	0	0	0	0.99227	1	24650	24650		5.7319	0	1	2215600			31942	10546	23133	23301	31171	31171					0.06513199288360738
LLRSRQNQFWI	11	Unmodified	_LLRSRQNQFWI_					0	0	0			REV__DUXA|p.R152Q|1|0.4|ENSG00000258873|chr19:57155356-57155356|C/T|missense_variant	REV__DUXA|p.R152Q|1|0.4|ENSG00000258873|chr19:57155356-57155356|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	487.3119812011719	3	487.608882	1459.80482	-0.47223	-0.00023026	0.10882	5.3061E-05	-0.36341	-0.0001772	487.60883648023196	87.156	0.30342	87.889	87.662	87.966	0.733					8	5	2	0	0	0	1.0002	1	33169	33169		0.45452	0	1	1314900	+		31943	16046	23134	23302	31172	31172					0.09330621774097381
LLRSVLYLC	9	Unmodified	_LLRSVLYLC_					0	0	0			REV__ENST00000508736.1_1_12:49994556-49994850:+|nuORF	REV__ENST00000508736.1_1_12:49994556-49994850:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1079.2965087890625	1	1079.62816	1078.62089	0.21177	0.00022863	0.73554	0.00079411	0.94731	0.0010227	1080.6301567015225	117.41	0.96365	118.07	117.48	118.44	0.65962					31	18	2	0	0	0	0.77244	1	44610	44610		9.3474	0.75416	1	19849000	+		31944	25584	23135	23303	31173	31173					0.0847213701902092
LLRSVRGP	8	Unmodified	_LLRSVRGP_					0	0	0			REV__TPRN|p.L315Pfs*136|1|0.34|ENSG00000176058|chr9:137199768-137199769|-/GG|frameshift_variant	REV__TPRN|p.L315Pfs*136|1|0.34|ENSG00000176058|chr9:137199768-137199769|-/GG|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	449.68499755859375	2	449.285069	896.555585	-0.47287	-0.00021245	0.067197	3.0191E-05	-0.40567	-0.00018226	449.2850729609209	30.038	0.90537	30.038	29.798	30.703	0					40	17	4	0	0	0	0.77123	1	9749	9749		14.582	0	1	137030000	+		31945	21383	23136	23304	31174	31174					0.10316903608190842
LLRTASLHL	9	Unmodified	_LLRTASLHL_					0	0	0		ENSG00000126215|ENST00000555055|XRCC3	ENSG00000126215|ENST00000555055|XRCC3	ENSG00000126215|ENST00000555055|XRCC3	MULTI-SECPEP	A375_MHC_IP_R2	2	512.7185668945312	2	512.319109	1022.62366	-1.0179	-0.0005215	-0.19206	-9.8398E-05	-1.21	-0.0006199	512.3190799628663	57.991	0.40148	58.74	58.528	58.929	0.74894					17	7	3	0	0	0	0.65527	1	21938	21938		22.736	3.4793	1	1713700			31946	4028	23137	23305	31175	31175					0.11325728468182206
LLRTKTVV	8	Unmodified	_LLRTKTVV_					0	0	0			REV__ENST00000478968.6_1_3:52738772-52739759:-|nuORF	REV__ENST00000478968.6_1_3:52738772-52739759:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	465.6217956542969	2	465.310752	928.606951	-0.17601	-8.1897E-05	-0.28409	-0.00013219	-0.46009	-0.00021409	465.31051461172257	57.125	0.35746	57.125	56.905	57.263	0					11	6	2	0	0	0	0.972	1	20508	20508		6.3541	0	1	1582600	+		31947	25226	23138	23306	31176	31176					0.1397922758221739
LLRTNHDWG	9	Unmodified	_LLRTNHDWG_					0	0	0			REV__ENST00000552132.5_1_12:29525443-29534076:-|nuORF	REV__ENST00000552132.5_1_12:29525443-29534076:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	371.98895263671875	3	371.192957	1110.55704	0.58034	0.00021542	0.16778	6.228E-05	0.74812	0.0002777	371.5271270335116	22.899	0.65602	22.899	22.368	23.024	0					17	12	2	0	0	0	0.8028	1	6092	6092		2.4985	1.722	1	2169800	+		31948	26049	23139	23307	31177	31177					0.00618492906278334
LLRTRKERVRT	11	Unmodified	_LLRTRKERVRT_					0	0	0			REV__ENST00000526110.5_1_11:122929183-122929402:-|nuORF	REV__ENST00000526110.5_1_11:122929183-122929402:-|nuORF	MSMS	A375_MHC_IP_R2	2	476.598388671875	3	476.635431	1426.88446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.233	1	88.965	88.465	89.465	0.7318								0	0	0	0.16337	1	33576	33576		0.40827	0.041592	1		+		31949	25769	23140	23308	31178	31178					0.18809688448027373
LLRTTNKSFI	10	Unmodified	_LLRTTNKSFI_					0	0	0		ENSG00000166105|ENST00000431683|GLB1L3;nc|ENSG00000166105|Q8NCI6-4|GLB1L3	ENSG00000166105|ENST00000431683|GLB1L3	ENSG00000166105|ENST00000431683|GLB1L3	MULTI-MSMS	A375_MHC_IP_R1	1	398.6396484375	3	398.239796	1191.69756	-0.027	-1.0752E-05	-0.13931	-5.5478E-05	-0.16631	-6.623E-05	398.2396413762437	71.272	0.60979	71.272	71.005	71.615	0					26	11	3	0	0	0	0.69726	1	25888	25888		13.519	13.519	1	3713400			31950	7023	23141	23309	31179	31179					0.10937651839844875
LLRVCGLFG	9	Unmodified	_LLRVCGLFG_					0	0	0			REV__ENSG00000198742|ENST00000361368|SMURF1;REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	MSMS	A375_MHC_IP_R2	2	489.1877136230469	2	489.28368	976.552807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.74	1	131.93	131.43	132.43	0.18953								0	0	0	0.15427	1	51823	51823		14.582	1.0738	1		+		31951	22409;17561	23142	23310	31180	31180					0.06359312159020192
LLRVGYDV	8	Unmodified	_LLRVGYDV_					0	0	0			REV__ENST00000560505.1_1_15:91453893-91454296:+|nuORF	REV__ENST00000560505.1_1_15:91453893-91454296:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	468.1304931640625	2	467.77146	933.528367	-1.0219	-0.000478	-0.05807	-2.7164E-05	-1.0799	-0.00050516	467.7714373514255	59.046	0.55807	59.793	59.54	60.098	0.74714					18	10	3	0	0	0	0.73227	1	22363	22363		46.021	0	1	2432500	+		31952	22207	23143	23311	31181	31181					0.05894375277136987
LLRVLAPF	8	Unmodified	_LLRVLAPF_					0	0	0			REV__nc|ENSG00000166839|Q495B1-2|ANKDD1A	REV__nc|ENSG00000166839|Q495B1-2|ANKDD1A	MULTI-MSMS	A375_MHC_IP_R1	1	465.2023620605469	2	464.802563	927.590573	-0.035083	-1.6307E-05	0.37474	0.00017418	0.33966	0.00015788	464.80259364777015	117.42	0.55689	117.42	117.21	117.76	0					13	10	2	0	0	0	0.68907	1	43174	43174		38.151	7.9264	1	4200600	+		31953	20706	23144	23312	31182	31182					0.1238814641612862
LLRVLAPF	8	Unmodified	_LLRVLAPF_					0	0	0			REV__nc|ENSG00000166839|Q495B1-2|ANKDD1A	REV__nc|ENSG00000166839|Q495B1-2|ANKDD1A	MULTI-MSMS	A375_MHC_IP_R2	2	465.2018737792969	2	464.802563	927.590573	-0.45353	-0.0002108	-0.6398	-0.00029738	-1.0933	-0.00050818	464.8022089589306	116.16	0.40781	116.82	116.66	117.07	0.65961					14	7	2	0	0	0	0.68907	1	43881	43881		38.151	38.151	1	6998200	+		31954	20706	23144	23312	31183	31183					0.1238814641612862
LLRVLAPF	8	Unmodified	_LLRVLAPF_					0	0	0			REV__nc|ENSG00000166839|Q495B1-2|ANKDD1A	REV__nc|ENSG00000166839|Q495B1-2|ANKDD1A	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	464.802563	927.590573	-0.035083	-1.6307E-05	0.37474	0.00017418	0.33966	0.00015788	464.80259364777015	117.42	0.55689	117.42	117.21	117.76	0	0	0	NaN	38.151	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4200600	+		31955	20706	23144	23312							0.1238814641612862
LLRVLLLLL	9	Unmodified	_LLRVLLLLL_					0	0	0		ENST00000555747.1_1_14:101193339-101194797:+|nuORF;nc|ENSG00000185559|P80370-2|DLK1;ENSG00000185559|ENST00000341267|DLK1	ENST00000555747.1_1_14:101193339-101194797:+|nuORF	ENST00000555747.1_1_14:101193339-101194797:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	533.671630859375	2	533.391545	1064.76854	-0.78447	-0.00041843	1.4088	0.00075146	0.62438	0.00033304	533.392603015591	74.522	0.15245	75.26	75.163	75.315	0.73751					4	2	2	0	0	0	0.8175	1	28293	28293		0	0	1	621190			31956	8675	23145	23313	31184	31184					0.238743966153379
LLRVLRAPR	9	Unmodified	_LLRVLRAPR_					0	0	0		ENST00000418543.7_1_19:12777625-12780615:+|nuORF	ENST00000418543.7_1_19:12777625-12780615:+|nuORF	ENST00000418543.7_1_19:12777625-12780615:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1094.4937744140625	1	1093.73166	1092.72438	-0.32408	-0.00035446	-3.503	-0.0038313	-3.8271	-0.0041858	1093.7302867437456	121.91	0.30356	121.91	121.67	121.97	0					7	5	2	0	0	0	0.81122	1	45222	45222		0.6015	0	1	21560000			31957	11708	23146	23314	31185	31185					0.18172805241692913
LLRWDLTF	8	Unmodified	_LLRWDLTF_					0	0	0		ENSG00000154118|ENST00000284262|JPH3	ENSG00000154118|ENST00000284262|JPH3	ENSG00000154118|ENST00000284262|JPH3	MULTI-SECPEP	A375_MHC_IP_R1	1	532.1859130859375	2	532.300384	1062.58622	-0.39116	-0.00020822	3.1738	0.0016894	2.7826	0.0014812	532.8030321364712	107.42	0.61412	107.42	106.93	107.54	0					14	11	2	0	0	0	0.94587	1	39335	39335		10.074	6.1295	1	1543400			31958	6057	23147	23315	31186	31186					0.057426372025247474
LLRYLLFGP	9	Unmodified	_LLRYLLFGP_					0	0	0			REV__ENST00000531734.5_2_1:110162799-110168306:+|nuORF	REV__ENST00000531734.5_2_1:110162799-110168306:+|nuORF	MSMS	A375_MHC_IP_R1	1	364.62530517578125	3	364.558577	1090.6539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.005	1	52.005	51.505	52.505	0								0	0	0	0.15486	1	18479	18479		5.7319	1.5423	1		+		31959	25854	23148	23316	31187	31187					0.11220087133369816
LLRYSATAVP	10	Unmodified	_LLRYSATAVP_					0	0	0			REV__nc|ENSG00000171453|O15160-2|POLR1C	REV__nc|ENSG00000171453|O15160-2|POLR1C	MSMS	A375_MHC_IP_R1	1	545.7158203125	2	545.816399	1089.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.5	1	132.5	132	133	0								0	0	0	0.15435	1	51089	51089		6.7232	0	1		+		31960	21065	23149	23317	31188	31188					0.07702004885709357
LLRYYYDRYTQ	11	Unmodified	_LLRYYYDRYTQ_					0	0	0		ENST00000461482.1_1_7:93519395-93519990:-|nuORF;nc|ENSG00000105825|P48307-2|TFPI2;ENSG00000105825|ENST00000222543|TFPI2	ENST00000461482.1_1_7:93519395-93519990:-|nuORF	ENST00000461482.1_1_7:93519395-93519990:-|nuORF	MSMS	A375_MHC_IP_R1	1	518.6767578125	3	518.596419	1552.76743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.608	1	48.608	48.108	49.108	0								0	0	0	0.16351	1	17158	17158		0.45452	0	1				31961	2640	23150	23318	31189	31189					0.013154857177823942
LLSANQGFSV	10	Unmodified	_LLSANQGFSV_					0	0	0		nc|ENSG00000090097|P57723-2|PCBP4;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000492809.5_1_3:51992079-51994784:-|nuORF	nc|ENSG00000090097|P57723-2|PCBP4	nc|ENSG00000090097|P57723-2|PCBP4	MULTI-SECPEP	A375_MHC_IP_R1	1	518.6768798828125	2	518.277106	1034.53966	-0.54954	-0.00028481	0.27668	0.0001434	-0.27286	-0.00014142	518.277158554776	60.931	1.0191	60.931	60.312	61.331	0					25	19	2	0	0	0	0.6774	1	21962	21962		27.629	4.4804	1	2226000			31962	1945	23151	23319	31190	31190					0.023771525806068894
LLSCLQIAR	9	Unmodified	_LLSCLQIAR_					0	0	0			REV__ENST00000302392.4_1_3:44906723-44906972:+|nuORF	REV__ENST00000302392.4_1_3:44906723-44906972:+|nuORF	MSMS	A375_MHC_IP_R2	2	508.7047424316406	2	508.799694	1015.58484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.624	1	75.362	74.862	75.862	0.73752								0	0	0	0.14851	1	28325	28325		24.021	0.87215	1		+		31963	23435	23152	23320	31191	31191					0.07766679842154645
LLSDLLELL	9	Unmodified	_LLSDLLELL_					0	0	0		LILRA1|p.P211L|1|0.25|ENSG00000104974|chr19:54595373-54595373|C/T|missense_variant	LILRA1|p.P211L|1|0.25|ENSG00000104974|chr19:54595373-54595373|C/T|missense_variant	LILRA1|p.P211L|1|0.25|ENSG00000104974|chr19:54595373-54595373|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	515.2151489257812	2	514.815533	1027.61651	-0.57166	-0.0002943	0.10463	5.3863E-05	-0.46704	-0.00024044	514.8155438710774	138.16	0.35558	138.24	138.11	138.47	0.083969					17	6	4	0	0	0	0.043556	1	54191	54191		89.427	11.442	1	5060900			31964	14298	23153	23321	31192	31192					0.10380951077104328
LLSDPEEQ	8	Unmodified	_LLSDPEEQ_					0	0	0			REV__nc|ENSG00000167483|Q86XR2-2|NIBAN3	REV__nc|ENSG00000167483|Q86XR2-2|NIBAN3	MULTI-MSMS	A375_MHC_IP_R1	1	465.6871337890625	2	465.724372	929.434192	0.023908	1.1135E-05	2.1428	0.00099797	2.1667	0.0010091	465.7257203936374	108.39	0.30578	108.39	108.15	108.46	0					8	5	2	0	0	0	0.75322	1	39725	39725		19.439	1.304	1	599800	+		31965	27342	23154	23322	31193	31193					-0.0333480833566
LLSDPEEQ	8	Unmodified	_LLSDPEEQ_					0	0	0			REV__nc|ENSG00000167483|Q86XR2-2|NIBAN3	REV__nc|ENSG00000167483|Q86XR2-2|NIBAN3	MSMS	A375_MHC_IP_R2	2	465.6866149902344	2	465.724372	929.434192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.32	1	108.07	107.57	108.57	0.75436								0	0	0	0.16876	1	40546	40546		19.439	3.6708	1		+		31966	27342	23154	23322	31194	31194					-0.0333480833566
LLSDPIPEV	9	Unmodified	_LLSDPIPEV_					0	0	0		ENSG00000141564|ENST00000306801|RPTOR;ENST00000577161.5_1_17:78519375-78883449:+|nuORF	ENSG00000141564|ENST00000306801|RPTOR	ENSG00000141564|ENST00000306801|RPTOR	MULTI-MSMS	A375_MHC_IP_R1	1	982.9464111328125	1	982.545539	981.538263	0.33869	0.00033278	-0.71382	-0.00070136	-0.37512	-0.00036857	982.5448994744014	106.38	0.46173	106.38	106.16	106.62	0					11	8	2	0	0	0	0.091096	1	39101	39101		52.268	16.224	1	1929900			31967	5257	23155	23323	31195	31195					0.04675518491865205
LLSDPIPEV	9	Unmodified	_LLSDPIPEV_					0	0	0		ENSG00000141564|ENST00000306801|RPTOR;ENST00000577161.5_1_17:78519375-78883449:+|nuORF	ENSG00000141564|ENST00000306801|RPTOR	ENSG00000141564|ENST00000306801|RPTOR	MULTI-MATCH	A375_MHC_IP_R2	2		1	982.545539	981.538263	0.0112	1.1004E-05	-0.14702	-0.00014445	-0.13582	-0.00013345	982.545159805646	105.54	0.45822	106.3	106.12	106.58	0.75977	-0.039434	0.00010877	NaN	52.268	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2050200			31968	5257	23155	23323							0.04675518491865205
LLSDQPDDD	9	Unmodified	_LLSDQPDDD_					0	0	0		APPL2|p.N644S|1|0.45|ENSG00000136044|chr12:105174378-105174378|T/C|missense_variant	APPL2|p.N644S|1|0.45|ENSG00000136044|chr12:105174378-105174378|T/C|missense_variant	APPL2|p.N644S|1|0.45|ENSG00000136044|chr12:105174378-105174378|T/C|missense_variant	MSMS	A375_MHC_IP_R1	1	509.20263671875	2	509.222194	1016.42983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.851	1	78.851	78.351	79.351	0								0	0	0	0.1499	1	28779	28779		21.747	0	1				31969	165	23156	23324	31196	31196					-0.07772317549233776
LLSDTVQHL	9	Unmodified	_LLSDTVQHL_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	MULTI-SECPEP	A375_MHC_IP_R1	1	513.6845703125	2	513.284931	1024.55531	-0.46163	-0.00023695	-0.063883	-3.279E-05	-0.52551	-0.00026974	513.2849028799709	59.677	0.50766	59.677	59.448	59.955	0					17	9	2	0	0	0	0.27742	1	21512	21512		51.63	23.143	1	3705700			31970	7128	23157	23325	31197	31197					0.044014390976599316
LLSDTVQHL	9	Unmodified	_LLSDTVQHL_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	MULTI-SECPEP	A375_MHC_IP_R2	2	513.115966796875	2	513.284931	1024.55531	-1.131	-0.00058053	0.81669	0.00041919	-0.31432	-0.00016134	513.2847914948308	58.869	0.66014	59.616	59.387	60.047	0.74714					21	12	2	0	0	0	0.37663	1	22301	22301		43.772	14.691	1	5056500			31971	7128	23157	23325	31198	31198					0.044014390976599316
LLSDYESRWTR	11	Unmodified	_LLSDYESRWTR_					0	0	0			REV__ENSG00000082212|ENST00000321341|ME2	REV__ENSG00000082212|ENST00000321341|ME2	MSMS	A375_MHC_IP_R2	2	713.7594604492188	2	713.35969	1424.70483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.917	1	76.658	76.158	77.158	0.74052								0	0	0	0.16191	1	28820	28820		8.7454	0	1		+		31972	16787	23158	23326	31199	31199					0.009463396495902998
LLSEDFVSV	9	Unmodified	_LLSEDFVSV_					0	0	0		nc|ENSG00000006282|Q8TB22-4|SPATA20;ENST00000503063.5_1_17:48625445-48628667:+|nuORF;nc|ENSG00000006282|Q8TB22-3|SPATA20;SPATA20|p.Q711Rfs*22|1|0.46|ENSG00000006282|chr17:50555252-50555252|T/-|frameshift_variant;nc|ENSG00000006282|Q8TB22|SPATA20;ENSG00000006282|ENST00000006658|SPATA20	nc|ENSG00000006282|Q8TB22-4|SPATA20	nc|ENSG00000006282|Q8TB22-4|SPATA20	MULTI-SECPEP	A375_MHC_IP_R2	2	505.16595458984375	2	504.76604	1007.51753	-0.6641	-0.00033521	0.31166	0.00015731	-0.35244	-0.0001779	504.7661790119382	108.42	0.6098	109.18	108.92	109.53	0.75436					15	11	2	0	0	0	0.20094	1	40955	40955		44.407	8.3628	1	1477100			31973	910	23159	23327	31200	31200					0.014069281122033317
LLSEEEIWE	9	Unmodified	_LLSEEEIWE_					0	0	0		tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1	tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1	tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1	MSMS	A375_MHC_IP_R2	2	574.241455078125	2	574.279512	1146.54447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.18	1	115.87	115.37	116.37	0.68999								0	0	0	0.15283	1	43418	43418		16.942	2.104	1				31974	29600	23160	23328	31201	31201					-0.022940080672924523
LLSGKRRS	8	Unmodified	_LLSGKRRS_					0	0	0			REV__ENST00000299413.6_1_11:35684418-35684712:+|nuORF	REV__ENST00000299413.6_1_11:35684418-35684712:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	459.1876525878906	2	458.787976	915.561398	-0.40361	-0.00018517	0.020614	9.4575E-06	-0.383	-0.00017572	458.78789922764133	129.15	1.3646	129.39	129.21	130.58	0.23946					68	26	4	0	0	0	0.972	1	50754	50754		2.5775	2.5775	1	91624000	+		31975	23405	23161	23329	31202	31202					0.10024002119848774
LLSGLINL	8	Unmodified	_LLSGLINL_					0	0	0			REV__ENSG00000066813|ENST00000329697|ACSM2B	REV__ENSG00000066813|ENST00000329697|ACSM2B	MULTI-SECPEP	A375_MHC_IP_R2	2	422.17071533203125	2	421.770929	841.527304	-0.1084	-4.5718E-05	0.294	0.000124	0.1856	7.8282E-05	421.77079755070304	75.859	0.71134	76.6	76.232	76.943	0.74052					23	13	2	0	0	0	0.20664	1	28766	28766		77.984	3.5616	1	2777300	+		31976	16525	23162	23330	31203	31203					0.10020160908231901
LLSGSISILL	10	Unmodified	_LLSGSISILL_					0	0	0		ENST00000294072.8_2_11:61116428-61116869:-|nuORF	ENST00000294072.8_2_11:61116428-61116869:-|nuORF	ENST00000294072.8_2_11:61116428-61116869:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	508.72332763671875	2	508.323525	1014.6325	-0.76761	-0.00039019	0.28677	0.00014577	-0.48084	-0.00024442	508.3234581247478	96.261	0.35602	97.012	96.906	97.262	0.75044					11	6	2	0	0	0	0.42954	1	36591	36591		49.933	2.1843	1	1032100			31977	10486	23163	23331	31204	31204					0.12576657314014028
LLSGSISILL	10	Unmodified	_LLSGSISILL_					0	0	0		ENST00000294072.8_2_11:61116428-61116869:-|nuORF	ENST00000294072.8_2_11:61116428-61116869:-|nuORF	ENST00000294072.8_2_11:61116428-61116869:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	508.323525	1014.6325	-0.31686	-0.00016107	-0.40957	-0.00020819	-0.72642	-0.00036926	508.3233357726324	97.29	0.35349	97.29	97.086	97.44	0	0.13944	-0.0004182	NaN	49.933	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1234000			31978	10486	23163	23331							0.12576657314014028
LLSGSRDKTI	10	Unmodified	_LLSGSRDKTI_					0	0	0		ENSG00000007168|ENST00000397195|PAFAH1B1	ENSG00000007168|ENST00000397195|PAFAH1B1	ENSG00000007168|ENST00000397195|PAFAH1B1	MULTI-SECPEP	A375_MHC_IP_R2	2	545.0165405273438	2	545.316763	1088.61897	-0.69227	-0.0003775	0.40132	0.00021885	-0.29094	-0.00015866	545.3169005853605	134.58	0.86206	134.72	134.44	135.31	0.13901					24	16	3	0	0	0	0.90853	1	53099	53099		10.824	2.0785	1	5778300			31979	935	23164	23332	31205	31205					0.07820799534761136
LLSHEDCYI	9	Unmodified	_LLSHEDCYI_					0	0	0		nc|ENSG00000127831|P09327-2|VIL1;ENSG00000127831|ENST00000248444|VIL1	nc|ENSG00000127831|P09327-2|VIL1	nc|ENSG00000127831|P09327-2|VIL1	MSMS	A375_MHC_IP_R1	1	546.6795043945312	2	546.755149	1091.49575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.917	1	65.917	65.417	66.417	0								0	0	0	0.15486	1	23869	23869		13.508	1.8676	1				31980	4104	23165	23333	31206	31206					-0.04634199908036862
LLSHITSSL	9	Unmodified	_LLSHITSSL_					0	0	0		ENSG00000112893|ENST00000261483|MAN2A1	ENSG00000112893|ENST00000261483|MAN2A1	ENSG00000112893|ENST00000261483|MAN2A1	MULTI-SECPEP	A375_MHC_IP_R1	1	486.181640625	2	485.782025	969.549496	-0.46306	-0.00022494	0.13199	6.4119E-05	-0.33106	-0.00016083	485.7820551564643	66.587	0.40768	66.587	66.326	66.734	0					13	7	3	0	0	0	0.3243	1	24159	24159		44.407	0.54872	1	1612900			31981	3117	23166	23334	31207	31207					0.06350340586004677
LLSHITSSL	9	Unmodified	_LLSHITSSL_					0	0	0		ENSG00000112893|ENST00000261483|MAN2A1	ENSG00000112893|ENST00000261483|MAN2A1	ENSG00000112893|ENST00000261483|MAN2A1	MULTI-MATCH	A375_MHC_IP_R2	2		2	485.782025	969.549496	-0.7726	-0.00037531	-0.29145	-0.00014158	-1.064	-0.0005169	485.7820460402275	65.592	0.55931	66.331	66.069	66.629	0.73812	-0.12811	-0.00034942	NaN	44.407	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1348400			31982	3117	23166	23334							0.06350340586004677
LLSHKLPARL	10	Unmodified	_LLSHKLPARL_					0	0	0		nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1	nc|ENSG00000198862|O94822-3|LTN1	nc|ENSG00000198862|O94822-3|LTN1	MULTI-MSMS	A375_MHC_IP_R1	1	383.91912841796875	3	383.248514	1146.72371	0.14989	5.7446E-05	-0.060847	-2.332E-05	0.089044	3.4126E-05	383.2484055433488	36.334	0.56002	36.334	36.084	36.644	0					24	10	3	0	0	0	0.71267	1	12096	12096		6.6235	0.43161	1	8604800			31983	9354	23167	23335	31208	31208					0.15621965801983606
LLSKEREL	8	Unmodified	_LLSKEREL_					0	0	0		ENSG00000179071|ENST00000316398|CCDC89	ENSG00000179071|ENST00000316398|CCDC89	ENSG00000179071|ENST00000316398|CCDC89	MULTI-MSMS	A375_MHC_IP_R2	2	494.3009033203125	2	494.295299	986.576045	-0.32306	-0.00015969	-0.70521	-0.00034858	-1.0283	-0.00050827	494.2951860008406	86.087	0.55987	86.82	86.592	87.151	0.733					16	10	2	0	0	0	0.69557	1	32750	32750		36.127	1.7253	1	1456800			31984	8202	23168	23336	31209	31209					0.08222029477337855
LLSKILLKLY	10	Unmodified	_LLSKILLKLY_					0	0	0		tr|U7SKV9|U7SKV9_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01950PE=4SV=1	tr|U7SKV9|U7SKV9_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01950PE=4SV=1	tr|U7SKV9|U7SKV9_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01950PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	602.280517578125	2	602.407392	1202.80023	-0.40273	-0.00024261	4.4318	0.0026697	4.0291	0.0024271	602.4100524288676	92.831	0.3052	93.571	93.341	93.646	0.73902					7	5	2	0	0	0	0.72335	1	35259	35259		1.8442	1.4435	1	1170000			31985	29486	23169	23337	31210	31210					0.20694344578600976
LLSKVLIYL	9	Unmodified	_LLSKVLIYL_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-SECPEP	A375_MHC_IP_R1	1	531.631591796875	2	531.352086	1060.68962	-0.33711	-0.00017912	0.53312	0.00028328	0.19601	0.00010415	531.3525710948653	116.92	0.35658	116.92	116.7	117.06	0					9	6	2	0	0	0	0.5212	1	42848	42848		32.786	7.3864	1	2715500			31986	2045	23170	23338	31211	31211					0.16170124590371415
LLSLASIIIVV	11	Unmodified	_LLSLASIIIVV_					0	0	0		nc|ENSG00000137648|Q9NRS4-2|TMPRSS4;nc|ENSG00000137648|Q9NRS4-3|TMPRSS4;ENSG00000137648|ENST00000437212|TMPRSS4	nc|ENSG00000137648|Q9NRS4-2|TMPRSS4	nc|ENSG00000137648|Q9NRS4-2|TMPRSS4	MULTI-MSMS	A375_MHC_IP_R1	1	381.3252258300781	3	380.924925	1139.75295	0.15273	5.8179E-05	0.29122	0.00011093	0.44395	0.00016911	380.9249610926976	90.412	0.40601	90.412	90.184	90.59	0					14	7	2	0	0	0	0.73367	1	33258	33258		5.4027	0	1	1605000			31987	4902	23171	23339	31212	31212					0.18866065307588542
LLSLASIIIVV	11	Unmodified	_LLSLASIIIVV_					0	0	0		nc|ENSG00000137648|Q9NRS4-2|TMPRSS4;nc|ENSG00000137648|Q9NRS4-3|TMPRSS4;ENSG00000137648|ENST00000437212|TMPRSS4	nc|ENSG00000137648|Q9NRS4-2|TMPRSS4	nc|ENSG00000137648|Q9NRS4-2|TMPRSS4	MULTI-MSMS	A375_MHC_IP_R2	2	381.3250732421875	3	380.924925	1139.75295	0.0695	2.6474E-05	0.39467	0.00015034	0.46417	0.00017681	380.9250140559268	89.189	0.70531	89.92	89.685	90.391	0.7318					21	13	2	0	0	0	0.73367	1	33953	33953		5.4027	0	1	1472500			31988	4902	23171	23339	31213	31213					0.18866065307588542
LLSLEEYN	8	Unmodified	_LLSLEEYN_					0	0	0		nc|ENSG00000203965|A8K855-2|EFCAB7;ENSG00000203965|ENST00000371088|EFCAB7;ENST00000461039.1_1_1:64021028-64034235:+|nuORF;EFCAB7|p.F430C|1|0.12|ENSG00000203965|chr1:63557188-63557188|T/G|missense_variant	nc|ENSG00000203965|A8K855-2|EFCAB7	nc|ENSG00000203965|A8K855-2|EFCAB7	MSMS	A375_MHC_IP_R1	1	490.7012939453125	2	490.75039	979.486227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.497	1	89.497	88.997	89.997	0								0	0	0	0.16876	1	32876	32876		16.942	0	1				31989	9403	23172	23340	31214	31214					-0.004336449219181304
LLSLLPGA	8	Unmodified	_LLSLLPGA_					0	0	0			REV__ENST00000477168.6_1_19:36037622-36038346:+|nuORF	REV__ENST00000477168.6_1_19:36037622-36038346:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	783.4564819335938	1	783.497467	782.49019	-0.20054	-0.00015712	0.28041	0.0002197	0.079874	6.2581E-05	783.4973772227457	107.97	0.66028	107.97	107.75	108.41	0					18	12	2	0	0	0	0.12286	1	39626	39626		90.836	0	1	2829900	+		31990	25197	23173	23341	31215	31215					0.09024489362468557
LLSLLPGA	8	Unmodified	_LLSLLPGA_					0	0	0			REV__ENST00000477168.6_1_19:36037622-36038346:+|nuORF	REV__ENST00000477168.6_1_19:36037622-36038346:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	783.497467	782.49019	-0.20054	-0.00015712	0.28041	0.0002197	0.079874	6.2581E-05	783.4973772227457	107.97	0.66028	107.97	107.75	108.41	0	0.12785	-0.00013485	NaN	90.836	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2829900	+		31991	25197	23173	23341							0.09024489362468557
LLSLLPGA	8	Unmodified	_LLSLLPGA_					0	0	0			REV__ENST00000477168.6_1_19:36037622-36038346:+|nuORF	REV__ENST00000477168.6_1_19:36037622-36038346:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	783.497467	782.49019	-1.0635	-0.00083322	0.66788	0.00052329	-0.39558	-0.00030994	783.4980662416689	106.95	0.50623	107.71	107.55	108.05	0.75977	-0.12785	0.00016874	NaN	90.836	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1954400	+		31992	25197	23173	23341							0.09024489362468557
LLSLLVKIGNN	11	Unmodified	_LLSLLVKIGNN_					0	0	0			REV__ENSG00000145041|ENST00000684031|DCAF1	REV__ENSG00000145041|ENST00000684031|DCAF1	MULTI-MSMS	A375_MHC_IP_R2	2	592.4413452148438	2	592.374081	1182.73361	-0.37549	-0.00022243	0.19738	0.00011692	-0.17811	-0.00010551	592.3740721974787	149.5	2.4303	149.52	147.58	150.01	0.01825					329	101	5	0	0	0	0.73906	1	57502	57502		0.26902	0.26902	1	4213000	+		31993	19459	23174	23342	31216	31216					0.14955109016705137
LLSMPDDVP	9	Unmodified	_LLSMPDDVP_					0	0	0			REV__ENSG00000115738|ENST00000396290|ID2	REV__ENSG00000115738|ENST00000396290|ID2	MULTI-SECPEP	A375_MHC_IP_R1	1	494.1791687011719	2	493.746793	985.479033	-0.41002	-0.00020245	0.050752	2.5059E-05	-0.35927	-0.00017739	493.7467156730943	64.693	1.881	64.693	63.887	65.768	0					58	36	2	0	0	0	0.52144	1	23791	23791		23.148	7.3012	1	2130600	+		31994	17909	23175	23343	31217	31217					-0.01428700793974258
LLSMPDDVP	9	Unmodified	_LLSMPDDVP_					0	0	0			REV__ENSG00000115738|ENST00000396290|ID2	REV__ENSG00000115738|ENST00000396290|ID2	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1786193847656	2	493.746793	985.479033	-0.46347	-0.00022884	-0.12551	-6.1972E-05	-0.58898	-0.00029081	493.74665098986185	64.117	2.5427	64.857	64.139	66.682	0.74023					78	49	2	0	0	0	0.62767	1	24650	24650		23.148	11.508	1	1701300	+		31995	17909	23175	23343	31218	31218					-0.01428700793974258
LLSNLNIW	8	Unmodified	_LLSNLNIW_					0	0	0		MBOAT1|p.I467*|1|0.08|ENSG00000172197|chr6:20102375-20102375|T/-|frameshift_variant;ENSG00000172197|ENST00000324607|MBOAT1;nc|ENSG00000172197|Q6ZNC8-2|MBOAT1	MBOAT1|p.I467*|1|0.08|ENSG00000172197|chr6:20102375-20102375|T/-|frameshift_variant	MBOAT1|p.I467*|1|0.08|ENSG00000172197|chr6:20102375-20102375|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	486.63812255859375	2	486.779285	971.544017	-0.20231	-9.8478E-05	-0.4877	-0.0002374	-0.69	-0.00033588	486.7788052140438	73.005	0.45634	73.005	72.779	73.235	0					13	8	2	0	0	0	0.94479	1	26486	26486		13.508	0.97634	1	940900			31996	7687	23176	23344	31219	31219					0.05710661794171301
LLSNNNQAL	9	Unmodified	_LLSNNNQAL_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1;ENST00000413279.1_1_2:136269117-136269381:-|nuORF;nc|ENSG00000145907|Q13283-2|G3BP1;ENST00000519832.1_1_5:151166169-151170647:+|nuORF	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MULTI-SECPEP	A375_MHC_IP_R1	1	494.166748046875	2	493.766906	985.519259	-0.33684	-0.00016632	-0.29702	-0.00014666	-0.63386	-0.00031298	493.7667597838782	50.739	0.5579	50.739	50.51	51.068	0					20	10	2	0	0	0	0.31606	1	17998	17998		47.749	18.667	1	3278800			31997	5591	23177	23345	31220	31220					0.025919819208070294
LLSNNNQAL	9	Unmodified	_LLSNNNQAL_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1;ENST00000413279.1_1_2:136269117-136269381:-|nuORF;nc|ENSG00000145907|Q13283-2|G3BP1;ENST00000519832.1_1_5:151166169-151170647:+|nuORF	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MULTI-SECPEP	A375_MHC_IP_R2	2	494.166259765625	2	493.766906	985.519259	-0.73329	-0.00036208	-0.10217	-5.0448E-05	-0.83546	-0.00041252	493.7667958263075	49.946	0.45895	50.7	50.445	50.904	0.75406					18	8	3	0	0	0	0.28216	1	18772	18772		49.933	11.959	1	2522600			31998	5591	23177	23345	31221	31221					0.025919819208070294
LLSNVFMSCL	10	Unmodified	_LLSNVFMSCL_					0	0	0			REV__ENST00000436347.5_1_2:190313199-190340140:+|nuORF	REV__ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	376.5928649902344	3	376.192689	1125.55624	0.23629	8.8892E-05	-0.38246	-0.00014388	-0.14616	-5.4985E-05	376.19256103283664	82.679	0.90854	83.422	83.093	84.001	0.74293					35	17	3	0	0	0	0.50967	1	31381	31381		18.721	8.406	1	9503400	+		31999	17880	23178	23346	31222	31222					-0.001518058493047647
LLSNVFMSCL	10	Unmodified	_LLSNVFMSCL_					0	0	0			REV__ENST00000436347.5_1_2:190313199-190340140:+|nuORF	REV__ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	376.192689	1125.55624	0.28791	0.00010831	-0.31207	-0.0001174	-0.024159	-9.0885E-06	376.19266897620065	83.599	0.66051	83.599	83.226	83.887	0	0.088406	3.9901E-05	NaN	18.721	34	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6262500	+		32000	17880	23178	23346							-0.001518058493047647
LLSNVFMSCL	10	Unmodified	_LLSNVFMSCL_					0	0	0			REV__ENST00000436347.5_1_2:190313199-190340140:+|nuORF	REV__ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	376.192689	1125.55624	0.23629	8.8892E-05	-0.38246	-0.00014388	-0.14616	-5.4985E-05	376.19256103283664	82.679	0.90854	83.422	83.093	84.001	0.74293	-0.088406	-3.9534E-05	NaN	18.721	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9503400	+		32001	17880	23178	23346							-0.001518058493047647
LLSPGLGW	8	Unmodified	_LLSPGLGW_					0	0	0		ENST00000372257.6_1_1:44818530-44820748:-|nuORF	ENST00000372257.6_1_1:44818530-44820748:-|nuORF	ENST00000372257.6_1_1:44818530-44820748:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	422.1419677734375	2	421.742171	841.469789	0.033417	1.4093E-05	-3.7743	-0.0015918	-3.7409	-0.0015777	421.74200392925087	55.419	0.66356	55.419	55.126	55.79	0					17	12	2	0	0	0	0.69448	1	19844	19844		36.466	0	1	1314600			32002	11192	23179	23347	31223	31223					0.04271318702660665
LLSPHNPAL	9	Unmodified	_LLSPHNPAL_					0	0	0		ENSG00000112996|ENST00000507110|MRPS30	ENSG00000112996|ENST00000507110|MRPS30	ENSG00000112996|ENST00000507110|MRPS30	MULTI-MSMS	A375_MHC_IP_R1	1	481.6769104003906	2	481.276909	960.539266	-0.39033	-0.00018786	0.044997	2.1656E-05	-0.34533	-0.0001662	481.2769002797474	50.293	0.71412	50.293	50.049	50.764	0					24	13	2	0	0	0	0.012843	1	17797	17797		92.653	40.385	1	3434900			32003	3121	23180	23348	31224	31224					0.05741777651417124
LLSPHNPAL	9	Unmodified	_LLSPHNPAL_					0	0	0		ENSG00000112996|ENST00000507110|MRPS30	ENSG00000112996|ENST00000507110|MRPS30	ENSG00000112996|ENST00000507110|MRPS30	MSMS	A375_MHC_IP_R2	2	481.677001953125	2	481.276909	960.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.396	1	50.153	49.653	50.653	0.75737								0	0	0	0.015773	1	18561	18561		89.401	26.828	1				32004	3121	23180	23348	31225	31225					0.05741777651417124
LLSPRWAP	8	Unmodified	_LLSPRWAP_					0	0	0			REV__ENST00000495186.5_1_X:48382242-48385545:+|nuORF	REV__ENST00000495186.5_1_X:48382242-48385545:+|nuORF	MSMS	A375_MHC_IP_R1	1	470.204833984375	2	470.27417	938.533787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.29	1	112.29	111.79	112.79	0								0	0	0	0.16876	1	41158	41158		6.3541	0	1		+		32005	25443	23181	23349	31226	31226					0.06206098859604481
LLSPSYSTFAY	11	Unmodified	_LLSPSYSTFAY_					0	0	0			REV__ENSG00000152669|ENST00000282572|CCNO	REV__ENSG00000152669|ENST00000282572|CCNO	MSMS	A375_MHC_IP_R1	1	624.6365356445312	2	624.810979	1247.6074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.79	1	103.79	103.29	104.29	0								0	0	0	0.16051	1	38113	38113		13.906	3.8321	1		+		32006	19812	23182	23350	31227	31227					-0.0064944227922296704
LLSQPFEDLK	10	Unmodified	_LLSQPFEDLK_					0	0	0			REV__ENST00000584580.1_1_17:45912634-45914483:+|nuORF	REV__ENST00000584580.1_1_17:45912634-45914483:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	595.7261962890625	2	595.326796	1188.63904	-0.88589	-0.0005274	0.21084	0.00012552	-0.67506	-0.00040188	595.3270254543461	57.548	0.55887	58.297	58.019	58.578	0.74894					14	10	2	0	0	0	0.83355	1	21771	21771		8.1555	0	1	4939700	+		32007	19253	23183	23351	31228	31228					0.05226550474708347
LLSQSKTLF	9	Unmodified	_LLSQSKTLF_					0	0	0			REV__ENST00000436347.5_1_2:190313199-190340140:+|nuORF	REV__ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	519.2052001953125	2	518.8055	1035.59645	-0.42273	-0.00021932	0.14805	7.6807E-05	-0.27469	-0.00014251	518.8055929915312	93.407	0.56107	93.407	93.228	93.789	0					14	10	2	0	0	0	0.46045	1	34356	34356		36.127	14.59	1	3262900	+		32008	17880	23184	23352	31229	31229					0.08007200137149084
LLSQSLLSV	9	Unmodified	_LLSQSLLSV_					0	0	0		ENST00000429242.7_3_19:19567968-19576198:+|nuORF	ENST00000429242.7_3_19:19567968-19576198:+|nuORF	ENST00000429242.7_3_19:19567968-19576198:+|nuORF	MSMS	A375_MHC_IP_R1	1	480.6916809082031	2	480.292225	958.569897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.91	1	126.91	126.41	127.41	0								0	0	0	0.039264	1	48544	48544		58.679	6.4105	1				32009	11841	23185	23353	31230	31230					0.08895511245827947
LLSRFDLL	8	Unmodified	_LLSRFDLL_					0	0	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3;ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7	ENSG00000112118|ENST00000596288|MCM3;ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MULTI-MSMS	A375_MHC_IP_R2	2	489.1942138671875	2	488.794935	975.575317	-0.57657	-0.00028182	-1.0126	-0.00049497	-1.5892	-0.00077679	488.79437483133137	127.22	0.25262	127.49	127.36	127.61	0.26593					7	4	2	0	0	0	0.13073	1	49850	49850		89.427	0	1	23063000			32010	7084;3050	23186	23354	31231	31231					0.08655234828290759
LLSRHVRRLFL	11	Unmodified	_LLSRHVRRLFL_					0	0	0			REV__ENST00000310441.11_1_X:153213093-153213690:-|nuORF	REV__ENST00000310441.11_1_X:153213093-153213690:-|nuORF	MSMS	A375_MHC_IP_R1	1	705.4468383789062	2	705.446237	1408.87792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.78	1	122.78	122.28	123.28	0								0	0	0	0.16331	1	45760	45760		1.4819	0	1		+		32011	23502	23187	23355	31232	31232					0.18983795287363137
LLSRRSYQERR	11	Unmodified	_LLSRRSYQERR_					0	0	0		ENST00000483778.5_1_2:242598716-242598917:+|nuORF	ENST00000483778.5_1_2:242598716-242598917:+|nuORF	ENST00000483778.5_1_2:242598716-242598917:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	489.1877136230469	3	488.611174	1462.81169	-0.53972	-0.00026371	-0.64692	-0.00031609	-1.1866	-0.00057981	488.94512463152387	131.84	0.30186	132.03	131.9	132.2	0.18953					8	5	2	0	0	0	0.99563	1	51823	51823		7.9454	4.8731	1	2415700			32012	12548	23188	23356	31233	31233					0.09879934654622957
LLSRSLLL	8	Unmodified	_LLSRSLLL_					0	0	0		nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2;CHPF2|p.L239P|1|0.52|ENSG00000033100|chr7:151235500-151235500|T/C|missense_variant;CHPF2|p.L239M|1|0.52|ENSG00000033100|chr7:151235499-151235499|C/A|missense_variant	nc|ENSG00000033100|Q9P2E5-2|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	MULTI-MSMS	A375_MHC_IP_R2	2	457.66387939453125	2	457.805303	913.596052	-0.22302	-0.0001021	0.23494	0.00010756	0.011921	5.4574E-06	457.8053294467774	95.876	0.45778	96.627	96.347	96.805	0.75045					18	8	3	0	0	0	0.72008	1	36390	36390		28.487	0	1	2908800			32013	1121	23189	23357	31234	31234					0.1357982520794394
LLSRSLLL	8	Unmodified	_LLSRSLLL_					0	0	0		nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2;CHPF2|p.L239P|1|0.52|ENSG00000033100|chr7:151235500-151235500|T/C|missense_variant;CHPF2|p.L239M|1|0.52|ENSG00000033100|chr7:151235499-151235499|C/A|missense_variant	nc|ENSG00000033100|Q9P2E5-2|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	457.805303	913.596052	-0.22302	-0.0001021	0.23494	0.00010756	0.011921	5.4574E-06	457.8053294467774	95.876	0.45778	96.627	96.347	96.805	0.75045	-0.15279	-9.2413E-05	NaN	28.487	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2908800			32014	1121	23189	23357							0.1357982520794394
LLSRTFQWLGW	11	Unmodified	_LLSRTFQWLGW_					0	0	0		nc|ENSG00000182077|Q3KNS1-2|PTCHD3;nc|ENSG00000182077|Q3KNS1|PTCHD3	nc|ENSG00000182077|Q3KNS1-2|PTCHD3	nc|ENSG00000182077|Q3KNS1-2|PTCHD3	MSMS	A375_MHC_IP_R1	1	469.4903259277344	3	469.590828	1405.75066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.51	1	78.51	78.01	79.01	0								0	0	0	0.16301	1	28651	28651		3.0723	0.44103	1				32015	14800	23190	23358	31235	31235					0.06401029622520582
LLSRTVEV	8	Unmodified	_LLSRTVEV_					0	0	0		nc|ENSG00000141994|Q96G46-3|DUS3L;ENSG00000141994|ENST00000309061|DUS3L;ENST00000589085.5_1_19:5787014-5789688:-|nuORF;nc|ENSG00000141994|Q96G46-2|DUS3L	nc|ENSG00000141994|Q96G46-3|DUS3L	nc|ENSG00000141994|Q96G46-3|DUS3L	MULTI-SECPEP	A375_MHC_IP_R2	2	459.1765441894531	2	458.776742	915.538931	-0.46207	-0.00021199	0.77386	0.00035503	0.31179	0.00014304	458.7769622172057	66.595	0.30631	67.332	67.189	67.495	0.73631					10	5	2	0	0	0	0.84294	1	25253	25253		30.637	7.9003	1	1370400			32016	5283	23191	23359	31236	31236					0.07778357931579194
LLSRTVEV	8	Unmodified	_LLSRTVEV_					0	0	0		nc|ENSG00000141994|Q96G46-3|DUS3L;ENSG00000141994|ENST00000309061|DUS3L;ENST00000589085.5_1_19:5787014-5789688:-|nuORF;nc|ENSG00000141994|Q96G46-2|DUS3L	nc|ENSG00000141994|Q96G46-3|DUS3L	nc|ENSG00000141994|Q96G46-3|DUS3L	MULTI-MATCH	A375_MHC_IP_R1	1		2	458.776742	915.538931	-0.6043	-0.00027724	1.6812	0.00077128	1.0769	0.00049405	458.7772690839731	67.688	0.50517	67.688	67.449	67.955	0	0.17835	0.00051351	NaN	30.637	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	463150			32017	5283	23191	23359							0.07778357931579194
LLSSFNPLS	9	Unmodified	_LLSSFNPLS_					0	0	0		ENST00000373625.7_1_1:32639125-32639185:+|nuORF	ENST00000373625.7_1_1:32639125-32639185:+|nuORF	ENST00000373625.7_1_1:32639125-32639185:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	488.6702575683594	2	489.26875	976.522947	-0.65977	-0.00032281	-1.2124	-0.00059318	-1.8722	-0.00091599	489.2685583446743	81.179	0.81297	81.924	81.468	82.281	0.74474					21	15	2	0	0	0	0.65246	1	30956	30956		15.847	0	1	1851100			32018	11236	23192	23360	31237	31237					0.03374651694673503
LLSSGHQGP	9	Unmodified	_LLSSGHQGP_					0	0	0		ENST00000307741.10_1_19:2813607-2814732:+|nuORF	ENST00000307741.10_1_19:2813607-2814732:+|nuORF	ENST00000307741.10_1_19:2813607-2814732:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	448.2832946777344	2	448.235242	894.45593	-0.42143	-0.0001889	0.22614	0.00010136	-0.19529	-8.7536E-05	448.2353360357822	30.678	0.60739	30.678	30.351	30.959	0					22	11	3	0	0	0	0.46038	1	9706	9706		21.747	0	1	13218000			32019	10592	23193	23361	31238	31238					0.004480412035718473
LLSSLEDHC	9	Unmodified	_LLSSLEDHC_					0	0	0			REV__ENST00000446464.7_1_2:85582201-85582297:+|nuORF	REV__ENST00000446464.7_1_2:85582201-85582297:+|nuORF	MSMS	A375_MHC_IP_R1	1	508.7229919433594	2	508.739499	1015.46445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.702	1	92.702	92.202	93.202	0								0	0	0	0.13805	1	34071	34071		30.225	9.7712	1		+		32020	24855	23194	23362	31239	31239					-0.04266772942116859
LLSSLEDQD	9	Unmodified	_LLSSLEDQD_					0	0	0			REV__nc|ENSG00000242372|P56537-2|EIF6	REV__nc|ENSG00000242372|P56537-2|EIF6	MSMS	A375_MHC_IP_R1	1	510.20367431640625	2	510.248212	1018.48187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.62	1	116.62	116.12	117.12	0								0	0	0	0.1521	1	42780	42780		18.135	4.6271	1		+		32021	22799	23195	23363	31240	31240					-0.026631541354618093
LLSSVTCEV	9	Unmodified	_LLSSVTCEV_					0	0	0			REV__ENSG00000102531|ENST00000492622|FNDC3A	REV__ENSG00000102531|ENST00000492622|FNDC3A	MULTI-SECPEP	A375_MHC_IP_R2	2	476.1618347167969	2	475.746793	949.479033	-0.49663	-0.00023627	-1.4674	-0.00069809	-1.964	-0.00093436	475.74584450080795	103.82	0.55956	104.59	104.19	104.75	0.76428					12	10	2	0	0	0	0.52144	1	39327	39327		23.148	0	1	904090	+		32022	17223	23196	23364	31241	31241					0.0022729920602841958
LLSTASLLRPL	11	Unmodified	_LLSTASLLRPL_					0	0	0			REV__ENST00000420433.5_1_4:57547633-57547810:-|nuORF	REV__ENST00000420433.5_1_4:57547633-57547810:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	592.4418334960938	2	592.374081	1182.73361	-0.70626	-0.00041837	0.37488	0.00022207	-0.33138	-0.0001963	592.3741776215314	149.47	2.5413	149.47	147.46	150	0					331	103	5	0	0	0	0.73795	1	56599	56599		1.3295	0	1	4846700	+		32023	24570	23197	23365	31242	31242					0.14955109016705137
LLSTFYEE	8	Unmodified	_LLSTFYEE_					0	0	0		nc|ENSG00000125485|Q9H8H2-6|DDX31;nc|ENSG00000125485|Q9H8H2-3|DDX31	nc|ENSG00000125485|Q9H8H2-6|DDX31	nc|ENSG00000125485|Q9H8H2-6|DDX31	MSMS	A375_MHC_IP_R2	2	501.2046813964844	2	501.244941	1000.47533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.82	1	141.85	141.35	142.35	0.030731								0	0	0	0.16876	1	55457	55457		2.5775	0	1				32024	14580	23198	23366	31243	31243					-0.024890472961942578
LLSTHYTIV	9	Unmodified	_LLSTHYTIV_					0	0	0		nc|ENSG00000152527|Q8IVE3-2|PLEKHH2;ENST00000405223.6_1_2:43871812-43968195:+|nuORF;ENSG00000152527|ENST00000282406|PLEKHH2	nc|ENSG00000152527|Q8IVE3-2|PLEKHH2	nc|ENSG00000152527|Q8IVE3-2|PLEKHH2	MULTI-MSMS	A375_MHC_IP_R2	2	524.3751831054688	2	523.797675	1045.5808	-0.49771	-0.0002607	-0.04368	-2.2879E-05	-0.54139	-0.00028358	523.7976254674555	62.999	0.65659	63.742	63.383	64.04	0.74263					23	12	3	0	0	0	0.5339	1	23822	23822		18.135	1.0221	1	6997900			32025	5972	23199	23367	31244	31244					0.059829136200733046
LLSTKESW	8	Unmodified	_LLSTKESW_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF;nc|ENSG00000038427|P13611-2|VCAN	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-SECPEP	A375_MHC_IP_R2	2	481.6896667480469	2	482.260925	962.507297	-0.47853	-0.00023077	-0.011636	-5.6115E-06	-0.49016	-0.00023639	482.26070622265706	91.025	0.81045	91.759	91.463	92.273	0.73451					18	15	2	0	0	0	0.93416	1	34699	34699		14.582	1.5392	1	628980			32026	1154	23200	23368	31245	31245					0.02454365177618456
LLSTTRLL	8	Unmodified	_LLSTTRLL_					0	0	0		ENST00000533637.5_1_11:59540699-59556358:+|nuORF	ENST00000533637.5_1_11:59540699-59556358:+|nuORF	ENST00000533637.5_1_11:59540699-59556358:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	459.1763610839844	2	458.794935	915.575317	-0.13129	-6.0236E-05	-0.33622	-0.00015426	-0.46751	-0.00021449	458.79456603334256	88.617	0.40584	88.617	88.358	88.764	0					10	7	2	0	0	0	0.972	1	32456	32456		2.8892	0	1	719160			32027	13202	23201	23369	31246	31246					0.11415234828291432
LLSVKCHVI	9	Unmodified	_LLSVKCHVI_					0	0	0			REV__ENST00000609587.1_1_18:2728435-2728615:+|nuORF	REV__ENST00000609587.1_1_18:2728435-2728615:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	506.63970947265625	2	506.304613	1010.59467	-0.59198	-0.00029972	2.4224	0.0012265	1.8305	0.00092678	506.80743603145726	85.199	0.35683	85.935	85.677	86.034	0.73602					14	6	3	0	0	0	0.58271	1	32394	32394		6.2058	0	1	1535900	+		32028	26570	23202	23370	31247	31247					0.0897986784754039
LLSWFLAL	8	Unmodified	_LLSWFLAL_					0	0	0		TAS2R13|p.V64L|1|0.12|ENSG00000212128|chr12:10909109-10909109|C/G|missense_variant	TAS2R13|p.V64L|1|0.12|ENSG00000212128|chr12:10909109-10909109|C/G|missense_variant	TAS2R13|p.V64L|1|0.12|ENSG00000212128|chr12:10909109-10909109|C/G|missense_variant	MSMS	A375_MHC_IP_R2	2	481.6719055175781	2	481.789121	961.56369	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.041	1	74.778	74.278	75.278	0.73752								0	0	0	0.16876	1	28102	28102		15.768	0	1				32029	29296	23203	23371	31248	31248					0.08137037804931424
LLSWLGSII	9	Unmodified	_LLSWLGSII_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MSMS	A375_MHC_IP_R1	1	501.3153381347656	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.539	1	93.539	93.039	94.039	0								0	0	0	0.14359	1	34384	34384		28.487	0	1				32030	1082	23204	23372	31249	31249					0.09544405488099983
LLSYCFCSL	9	Unmodified	_LLSYCFCSL_					0	0	0			REV__KIAA0195|p.P1133S|1|0.49|ENSG00000177728|chr17:75497188-75497188|C/T|missense_variant	REV__KIAA0195|p.P1133S|1|0.49|ENSG00000177728|chr17:75497188-75497188|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	524.7130126953125	2	524.745739	1047.47692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.28	1	104.28	103.78	104.78	0								0	0	0	0.15486	1	38292	38292		13.508	0.97634	1		+		32031	26840	23205	23373	31250	31250					-0.0449145280342691
LLSYSPESL	9	Unmodified	_LLSYSPESL_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-SECPEP	A375_MHC_IP_R1	1	505.19000244140625	2	504.76604	1007.51753	-0.14091	-7.1124E-05	0.32597	0.00016454	0.18507	9.3416E-05	504.7659690436996	109.16	0.55769	109.16	108.81	109.37	0					15	10	2	0	0	0	0.69504	1	39949	39949		4.3292	0	1	1520900			32032	3357	23206	23374	31251	31251					0.014069281122033317
LLTADLRSVQ	10	Unmodified	_LLTADLRSVQ_					0	0	0		ENSG00000162722|ENST00000366481|TRIM58;TRIM58|p.D315N|1|0.42|ENSG00000162722|chr1:247875971-247875971|G/A|missense_variant	ENSG00000162722|ENST00000366481|TRIM58	ENSG00000162722|ENST00000366481|TRIM58	MULTI-SECPEP	A375_MHC_IP_R2	2	558.2301025390625	2	558.324588	1114.63462	-0.65717	-0.00036691	0.073305	4.0928E-05	-0.58386	-0.00032598	558.3244863557911	132.9	1.3716	133.07	132.64	134.01	0.16487					49	26	3	0	0	0	0.93406	1	52538	52538		15.847	12.566	1	29089000			32033	6581	23207	23375	31252	31252					0.081890860518115
LLTCCYCC	8	Unmodified	_LLTCCYCC_					0	0	0		ENSG00000101152|ENST00000360864|DNAJC5;nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	MSMS	A375_MHC_IP_R2	2	461.1572570800781	2	461.170495	920.326438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.029	1	95.779	95.279	96.279	0.75045								0	0	0	0.16876	1	36104	36104		2.8892	0	1				32034	2256	23208	23376	31253	31253					-0.13691259058259675
LLTEEKKV	8	Unmodified	_LLTEEKKV_					0	0	0			REV__nc|ENSG00000078053|P49418-2|AMPH	REV__nc|ENSG00000078053|P49418-2|AMPH	MULTI-SECPEP	A375_MHC_IP_R1	1	479.8847961425781	2	480.292225	958.569897	-0.48425	-0.00023258	0.20156	9.6809E-05	-0.28269	-0.00013577	480.2922297488957	76.496	0.55826	76.496	76.269	76.827	0					14	10	2	0	0	0	0.972	1	27802	27802		0	0	1	1686100	+		32035	16703	23209	23377	31254	31254					0.08895511245816579
LLTEGDDES	9	Unmodified	_LLTEGDDES_					0	0	0			REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MULTI-MSMS	A375_MHC_IP_R1	1	490.11676025390625	2	489.716744	977.418936	-0.19196	-9.4005E-05	0.41125	0.0002014	0.21929	0.00010739	489.716888121152	105.35	0.86311	105.35	104.94	105.81	0					24	16	2	0	0	0	0.1478	1	38655	38655		42.095	15.753	1	3477300	+		32036	16564	23210	23378	31255	31255					-0.0706771992350923
LLTEGDDES	9	Unmodified	_LLTEGDDES_					0	0	0			REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MULTI-MSMS	A375_MHC_IP_R1	1	978.1105346679688	1	978.426212	977.418936	0.2587	0.00025312	-0.074437	-7.2831E-05	0.18426	0.00018029	978.4266105513717	105.4	2.344	105.4	104.89	107.24	0					100	45	4	0	0	0	0.026461	2	38849	38849;39113		77.984	54.836	1	54338000	+		32037	16564	23210	23378	31256;31257	31256					-0.0706771992350923
LLTEGDDES	9	Unmodified	_LLTEGDDES_					0	0	0			REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	978.426212	977.418936	0.2587	0.00025312	-0.074437	-7.2831E-05	0.18426	0.00018029	978.4266105513717	105.4	2.344	105.4	104.89	107.24	0	0.010622	-2.6409E-05	NaN	77.984	100	45	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54338000	+		32038	16564	23210	23378							-0.0706771992350923
LLTEGDDES	9	Unmodified	_LLTEGDDES_					0	0	0			REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	489.716744	977.418936	-0.19196	-9.4005E-05	0.41125	0.0002014	0.21929	0.00010739	489.716888121152	105.35	0.86311	105.35	104.94	105.81	0	-0.019004	-0.00020834	NaN	42.095	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3477300	+		32039	16564	23210	23378							-0.0706771992350923
LLTEGDDES	9	Unmodified	_LLTEGDDES_					0	0	0			REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MULTI-MATCH	A375_MHC_IP_R2	2		1	978.426212	977.418936	0.044836	4.3869E-05	-0.010101	-9.8831E-06	0.034735	3.3986E-05	978.426714152019	104.62	2.2415	105.38	104.9	107.14	0.76308	-0.010622	3.6539E-05	NaN	77.984	105	43	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78923000	+		32040	16564	23210	23378							-0.0706771992350923
LLTERKEW	8	Unmodified	_LLTERKEW_					0	0	0		tr|U7SYS3|U7SYS3_FUSNUIntegrationhostfactorsubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00898PE=4SV=1	tr|U7SYS3|U7SYS3_FUSNUIntegrationhostfactorsubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00898PE=4SV=1	tr|U7SYS3|U7SYS3_FUSNUIntegrationhostfactorsubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00898PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	538.2003784179688	2	537.800749	1073.58694	-1.0461	-0.00056262	0.46645	0.00025086	-0.5797	-0.00031176	537.8009388977645	39.114	0.46	39.888	39.658	40.118	0.77451					13	8	2	0	0	0	0.84748	1	14442	14442		36.044	0	1	2766400			32041	29845	23211	23379	31258	31258					0.0530943185160595
LLTFELKKRP	10	Unmodified	_LLTFELKKRP_					0	0	0			REV__ENST00000467010.2_1_8:92169765-92170749:+|nuORF	REV__ENST00000467010.2_1_8:92169765-92170749:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	415.55853271484375	3	415.595691	1243.76524	0.16353	6.7964E-05	0.093969	3.9053E-05	0.2575	0.00010702	415.59565696371254	46.727	0.30354	47.488	47.412	47.715	0.76128					7	5	2	0	0	0	0.94587	1	17588	17588		0.69767	0	1	1356800	+		32042	25050	23212	23380	31259	31259					0.15311101770635105
LLTFIIRERL	10	Unmodified	_LLTFIIRERL_					0	0	0			REV__tr|U7T4W4|U7T4W4_FUSNUProteintranslocasesubunitSecYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secYPE=3SV=1	REV__tr|U7T4W4|U7T4W4_FUSNUProteintranslocasesubunitSecYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secYPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	636.800048828125	2	637.403173	1272.79179	-0.5883	-0.00037498	0.098156	6.2565E-05	-0.49014	-0.00031242	637.4033607486832	147.85	0.16956	147.87	147.75	147.92	0.018707					13	12	2	0	0	0	0.95026	1	57423	57423		0.45834	0	1	81599	+		32043	28807	23213	23381	31260	31260					0.16630790661997708
LLTHNDTSI	9	Unmodified	_LLTHNDTSI_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R1	1	506.6665344238281	2	507.266739	1012.51892	-0.39313	-0.00019942	-0.54027	-0.00027406	-0.9334	-0.00047348	507.26662073233	74.657	1.5683	74.657	74.095	75.664	0					96	30	5	0	0	0	0.71541	1	27508	27508		11.64	0	1	13891000	+		32044	19932	23214	23382	31261	31261					0.013165622009523759
LLTHRVRLRRW	11	Unmodified	_LLTHRVRLRRW_					0	0	0		ENSG00000204478|ENST00000602960|PRAMEF20	ENSG00000204478|ENST00000602960|PRAMEF20	ENSG00000204478|ENST00000602960|PRAMEF20	MSMS	A375_MHC_IP_R2	2	753.468994140625	2	753.468035	1504.92152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.282	1	91.014	90.514	91.514	0.7318								0	0	0	0.16353	1	34351	34351		0.35063	0	1				32045	9448	23215	23383	31262	31262					0.18925404784476996
LLTLDDWSL	9	Unmodified	_LLTLDDWSL_					0	0	0		ENSG00000175294|ENST00000312106|CATSPER1;ENST00000529244.1_1_11:65786354-65788652:-|nuORF	ENSG00000175294|ENST00000312106|CATSPER1	ENSG00000175294|ENST00000312106|CATSPER1	MULTI-SECPEP	A375_MHC_IP_R2	2	538.0548095703125	2	538.28714	1074.55973	-0.60299	-0.00032458	-0.25579	-0.00013769	-0.85878	-0.00046227	538.2871021058695	95.084	0.55784	95.834	95.483	96.041	0.75045					13	10	2	0	0	0	0.69504	1	36170	36170		1.8442	0	1	1103500			32046	7948	23216	23384	31263	31263					0.02542903520566142
LLTLFPRRI	9	Unmodified	_LLTLFPRRI_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	A375_MHC_IP_R2	2	377.3131103515625	3	376.913243	1127.7179	-0.025324	-9.5448E-06	-0.025234	-9.5109E-06	-0.050557	-1.9056E-05	376.9131434219776	40.932	0.50922	41.706	41.386	41.895	0.77451					18	9	3	0	0	0	0.11715	1	15175	15175		47.594	11.088	1	4908800			32047	7927	23217	23385	31264	31264					0.15914867290302936
LLTLKLDKK	9	Unmodified	_LLTLKLDKK_					0	0	0			REV__nc|ENSG00000044459|Q9NXG0|CNTLN	REV__nc|ENSG00000044459|Q9NXG0|CNTLN	MULTI-SECPEP	A375_MHC_IP_R1	1	1071.1165771484375	1	1071.71361	1070.70633	0.43262	0.00046365	0.87979	0.00094288	1.3124	0.0014065	1071.715268830668	116.32	1.6269	116.32	115.53	117.16	0					42	31	2	0	0	0	0.8028	1	42596	42596		1.8442	0	1	36004000	+		32048	16355	23218	23386	31265	31265					0.17380625476312161
LLTLVKVD	8	Unmodified	_LLTLVKVD_					0	0	0			REV__ENSG00000070601|ENST00000377765|FRMPD1	REV__ENSG00000070601|ENST00000377765|FRMPD1	MULTI-SECPEP	A375_MHC_IP_R1	1	900.7034912109375	1	900.576445	899.569169	-0.37729	-0.00033978	0.6988	0.00062932	0.3215	0.00028954	900.5765709188802	129.68	0.40642	129.68	129.35	129.75	0					10	7	2	0	0	0	0.972	1	49746	49746		9.3474	0	1	16009000	+		32049	16577	23219	23387	31266	31266					0.11536716596754104
LLTMAMPHW	9	Unmodified	_LLTMAMPHW_					0	0	0		ENSG00000111012|ENST00000228606|CYP27B1	ENSG00000111012|ENST00000228606|CYP27B1	ENSG00000111012|ENST00000228606|CYP27B1	MULTI-SECPEP	A375_MHC_IP_R1	1	549.6902465820312	2	550.274998	1098.53544	-0.5786	-0.00031839	-0.38456	-0.00021161	-0.96316	-0.00053	550.2747377360971	61.055	1.1195	61.055	60.618	61.737	0					45	21	3	0	0	0	0.48581	1	22093	22093		24.674	0	1	11608000			32050	2962	23220	23388	31267	31267					-0.009883514383091097
LLTPPPPLL	9	Unmodified	_LLTPPPPLL_					0	0	0			REV__ENSG00000149654|ENST00000537909|CDH22	REV__ENSG00000149654|ENST00000537909|CDH22	MULTI-SECPEP	A375_MHC_IP_R2	2	481.2096252441406	2	480.810054	959.605554	-0.46901	-0.0002255	-0.30482	-0.00014656	-0.77383	-0.00037206	480.80991534266633	87.51	0.60551	88.242	87.913	88.519	0.7318					18	11	2	0	0	0	0.068175	1	33294	33294		63.563	0	1	1986300	+		32051	19695	23221	23389	31268	31268					0.12413593493465669
LLTQNTLFN	9	Unmodified	_LLTQNTLFN_					0	0	0			REV__ENST00000547673.1_1_12:77242095-77243332:+|nuORF	REV__ENST00000547673.1_1_12:77242095-77243332:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	531.702392578125	2	532.292756	1062.57096	-0.61576	-0.00032776	3.0143	0.0016045	2.3986	0.0012767	532.2960083108965	89.465	0.35357	90.197	89.985	90.339	0.7318					11	6	3	0	0	0	0.69504	1	34027	34027		7.9102	0	1	717510	+		32052	26010	23222	23390	31269	31269					0.04217725614716983
LLTQSLGNLF	10	Unmodified	_LLTQSLGNLF_					0	0	0			REV__ENSG00000254834|ENST00000526538|OR5M10	REV__ENSG00000254834|ENST00000526538|OR5M10	MULTI-SECPEP	A375_MHC_IP_R2	2	553.7159423828125	2	553.316232	1104.61791	-0.77532	-0.000429	-0.97347	-0.00053863	-1.7488	-0.00096763	553.3164023835255	76.786	0.55495	77.527	77.25	77.805	0.74052					21	10	3	0	0	0	0.56504	1	29179	29179		34.402	10.381	1	3834300	+		32053	22867	23223	23391	31270	31270					0.06978585165848017
LLTQTLVEA	9	Unmodified	_LLTQTLVEA_					0	0	0		DNAH9|p.S4145Ffs*44|1|0.38|ENSG00000007174|chr17:11934016-11934016|C/-|frameshift_variant;nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;DNAH9|p.E2775K|2|0.26|ENSG00000007174|chr17:11797696-11797696|G/A|missense_variant	DNAH9|p.S4145Ffs*44|1|0.38|ENSG00000007174|chr17:11934016-11934016|C/-|frameshift_variant	DNAH9|p.S4145Ffs*44|1|0.38|ENSG00000007174|chr17:11934016-11934016|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	494.6795349121094	2	494.289682	986.564812	-0.76497	-0.00037811	0.16525	8.1679E-05	-0.59972	-0.00029644	494.2896120243961	67.964	0.40482	67.964	67.804	68.209	0					10	7	2	0	0	0	0.4465	1	24585	24585		24.991	0	1	841820			32054	776	23224	23392	31271	31271					0.07099207383203066
LLTQVSRLL	9	Unmodified	_LLTQVSRLL_					0	0	0		ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	MULTI-SECPEP	A375_MHC_IP_R1	1	522.2342529296875	2	521.834591	1041.65463	-0.46751	-0.00024397	0.044466	2.3204E-05	-0.42305	-0.00022076	521.83456684235	96.436	0.66085	96.436	96.069	96.73	0					29	12	4	0	0	0	0.60917	1	35414	35414		25.399	0	1	4660400			32055	9957	23225	23393	31272	31272					0.13546881782417586
LLTRCMFAY	9	Unmodified	_LLTRCMFAY_					0	0	0		ENSG00000140521|ENST00000268124|POLG	ENSG00000140521|ENST00000268124|POLG	ENSG00000140521|ENST00000268124|POLG	MULTI-MSMS	A375_MHC_IP_R2	2	559.6959228515625	2	559.28028	1116.54601	-0.99244	-0.00055505	-1.0415	-0.00058247	-2.0339	-0.0011375	559.2795354996806	60.317	1.2176	61.062	60.601	61.819	0.74503					38	18	3	0	0	0	0.2002	1	22883	22883		37.974	5.6685	1	7767000			32056	5162	23226	23394	31273	31273					-0.007603687838582118
LLTRGTFV	8	Unmodified	_LLTRGTFV_					0	0	0			REV__ENSG00000155816|ENST00000319653|FMN2	REV__ENSG00000155816|ENST00000319653|FMN2	MULTI-SECPEP	A375_MHC_IP_R1	1	454.174072265625	2	453.774003	905.533452	-0.042623	-1.9341E-05	0.1557	7.0653E-05	0.11308	5.1312E-05	453.7742381652955	82.342	0.60939	82.342	81.961	82.571	0					24	11	3	0	0	0	0.86263	1	30081	30081		34.102	10.954	1	4033400	+		32057	19939	23227	23395	31274	31274					0.07690679139773238
LLTRGTFV	8	Unmodified	_LLTRGTFV_					0	0	0			REV__ENSG00000155816|ENST00000319653|FMN2	REV__ENSG00000155816|ENST00000319653|FMN2	MULTI-SECPEP	A375_MHC_IP_R2	2	454.17364501953125	2	453.774003	905.533452	-0.3315	-0.00015043	-0.10747	-4.8769E-05	-0.43898	-0.0001992	453.7739845973002	81.226	0.70973	81.971	81.673	82.383	0.74474					20	13	2	0	0	0	0.84748	1	30857	30857		21.747	0	1	2831000	+		32058	19939	23227	23395	31275	31275					0.07690679139773238
LLTRHTVL	8	Unmodified	_LLTRHTVL_					0	0	0			REV__ENST00000206595.10_1_14:31050289-31058589:+|nuORF	REV__ENST00000206595.10_1_14:31050289-31058589:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	476.192138671875	2	476.800552	951.58655	-0.8493	-0.00040495	-0.69424	-0.00033101	-1.5435	-0.00073596	476.8002094878675	60.252	0.61289	60.997	60.751	61.364	0.74504					16	11	2	0	0	0	0.93416	1	22828	22828		14.582	5.9884	1	1686900	+		32059	23025	23228	23396	31276	31276					0.10882056922412175
LLTRIKRAVAM	11	Unmodified	_LLTRIKRAVAM_					0	0	0			REV__ENST00000424720.2_12:132824120-132905933:-|nuORF	REV__ENST00000424720.2_12:132824120-132905933:-|nuORF	MSMS	A375_MHC_IP_R1	1	636.0670776367188	2	636.40265	1270.79075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.53	1	75.53	75.03	76.03	0								0	0	0	0.1623	1	27518	27518		6.7232	0.51738	1		+		32060	21713	23229	23397	31277	31277					0.16618253021442797
LLTRVIAEV	9	Unmodified	_LLTRVIAEV_					0	0	0		ENST00000519177.5_1_8:121583594-121823792:-|nuORF;nc|ENSG00000172164|Q13884-2|SNTB1;ENSG00000172164|ENST00000517992|SNTB1	ENST00000519177.5_1_8:121583594-121823792:-|nuORF	ENST00000519177.5_1_8:121583594-121823792:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.65557861328125	2	507.321317	1012.62808	-0.42731	-0.00021678	-0.30588	-0.00015518	-0.73318	-0.00037196	507.32107765266704	76.011	0.45458	76.011	75.815	76.269	0					11	8	2	0	0	0	0.36673	1	27725	27725		45.74	9.2337	1	1705800			32061	7682	23230	23398	31278	31278					0.12227192891089089
LLTRVIAEV	9	Unmodified	_LLTRVIAEV_					0	0	0		ENST00000519177.5_1_8:121583594-121823792:-|nuORF;nc|ENSG00000172164|Q13884-2|SNTB1;ENSG00000172164|ENST00000517992|SNTB1	ENST00000519177.5_1_8:121583594-121823792:-|nuORF	ENST00000519177.5_1_8:121583594-121823792:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	507.321317	1012.62808	-0.79328	-0.00040245	-0.23378	-0.0001186	-1.0271	-0.00052105	507.3213752359191	75.027	0.35256	75.764	75.57	75.922	0.73752	-0.12307	2.5576E-05	NaN	38.615	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1025200			32062	7682	23230	23398							0.12227192891089089
LLTSEPLSL	9	Unmodified	_LLTSEPLSL_					0	0	0			REV__ENST00000530928.5_1_11:65631499-65632379:+|nuORF	REV__ENST00000530928.5_1_11:65631499-65632379:+|nuORF	MSMS	A375_MHC_IP_R1	1	486.6849670410156	2	486.784233	971.553913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.41	1	126.41	125.91	126.91	0								0	0	0	0.13805	1	48278	48278		30.225	0	1		+		32063	21165	23231	23399	31279	31279					0.06699805008918247
LLTSGQRQL	9	Unmodified	_LLTSGQRQL_					0	0	0		nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L;ENST00000469726.5_1_1:17942561-18023872:+|nuORF;nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MULTI-MSMS	A375_MHC_IP_R2	2	508.69805908203125	2	508.298373	1014.58219	-0.79916	-0.00040621	0.20169	0.00010252	-0.59747	-0.00030369	508.2984454831995	127.88	0.86529	128.15	127.92	128.78	0.26593					31	16	3	0	0	0	0.70307	1	50205	50205		6.7232	0	1	10018000			32064	1597	23232	23400	31280	31280					0.07548547708859132
LLTSGQRQL	9	Unmodified	_LLTSGQRQL_					0	0	0		nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L;ENST00000469726.5_1_1:17942561-18023872:+|nuORF;nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	508.298373	1014.58219	-0.79916	-0.00040621	0.20169	0.00010252	-0.59747	-0.00030369	508.2984454831995	127.88	0.86529	128.15	127.92	128.78	0.26593	0.019129	1.1618E-05	NaN	6.7232	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10018000			32065	1597	23232	23400							0.07548547708859132
LLTSKAPVW	9	Unmodified	_LLTSKAPVW_					0	0	0			REV__ENST00000427137.1_1_7:46039264-46039813:-|nuORF	REV__ENST00000427137.1_1_7:46039264-46039813:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	507.7153625488281	2	507.80276	1013.59097	-0.65341	-0.0003318	-0.31538	-0.00016015	-0.96878	-0.00049195	507.8031763229283	91.97	0.45467	92.709	92.381	92.836	0.73902					13	8	2	0	0	0	0.4261	1	35005	35005		37.974	1.9298	1	1634000	+		32066	24662	23233	23401	31281	31281					0.08471521345325073
LLTSRSPVV	9	Unmodified	_LLTSRSPVV_					0	0	0		MTIF2|p.P178S|1|0.19|ENSG00000085760|chr2:55254173-55254173|G/A|missense_variant	MTIF2|p.P178S|1|0.19|ENSG00000085760|chr2:55254173-55254173|G/A|missense_variant	MTIF2|p.P178S|1|0.19|ENSG00000085760|chr2:55254173-55254173|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	486.1451110839844	2	486.297842	970.581131	-0.61399	-0.00029858	0.41397	0.00020131	-0.20002	-9.7268E-05	486.29813335907056	75.492	0.30728	76.232	76.129	76.436	0.74052					8	5	2	0	0	0	0.65246	1	28707	28707		15.847	7.937	1	572650			32067	14413	23234	23402	31282	31282					0.09466333339958055
LLTSVCPRKM	10	Unmodified	_LLTSVCPRKM_					0	0	0			REV__ENST00000513272.5_1_4:164433981-164435303:+|nuORF	REV__ENST00000513272.5_1_4:164433981-164435303:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	575.2353515625	2	574.319937	1146.62532	-0.33781	-0.00019401	-0.45534	-0.00026151	-0.79315	-0.00045552	574.3194560317256	129.22	1.6795	129.22	128.58	130.26	0					84	32	3	0	0	0	0.71455	1	49978	49978		3.2813	3.2813	1	18889000	+		32068	25638	23235	23403	31283	31283					0.057872781702826614
LLTSVCREAS	10	Unmodified	_LLTSVCREAS_					0	0	0			REV__nc|ENSG00000100280|Q10567-4|AP1B1	REV__nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	A375_MHC_IP_R2	2	541.2138671875	2	539.781699	1077.54884	-0.70546	-0.0003808	0.47704	0.0002575	-0.22842	-0.0001233	539.7819278100714	135.81	0.31018	135.92	135.79	136.1	0.11134					15	5	4	0	0	0	0.72078	1	53355	53355		2.9952	0.93549	1	2374900	+		32069	17067	23236	23404	31284	31284					0.013171778746482232
LLTTFPRPVT	10	Unmodified	_LLTTFPRPVT_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-SECPEP	A375_MHC_IP_R2	2	572.7172241210938	2	572.839874	1143.66519	-0.15842	-9.0751E-05	-1.5423	-0.0008835	-1.7007	-0.00097426	573.3412457428337	91.518	0.70926	92.252	91.97	92.68	0.7345					23	13	3	0	0	0	0.91556	1	34743	34743		10.074	4.3421	1	975890			32070	5662	23237	23405	31285	31285					0.09910864436847078
LLTTGRPS	8	Unmodified	_LLTTGRPS_					0	0	0			REV__ENST00000532150.1_1_11:75917479-75921696:-|nuORF	REV__ENST00000532150.1_1_11:75917479-75921696:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	844.0350952148438	1	844.488693	843.481417	-0.63668	-0.00053767	3.788	0.003199	3.1514	0.0026613	844.4943834888544	119.28	0.15288	119.81	119.73	119.89	0.5321					4	2	2	0	0	0	0.972	1	45419	45419		0.69038	0	1	9636600	+		32071	25863	23238	23406	31286	31286					0.05341515726001944
LLTVAADSI	9	Unmodified	_LLTVAADSI_					0	0	0		ENSG00000151320|ENST00000280979|AKAP6;nc|ENSG00000151320|Q13023-2|AKAP6;chr14:32495404-32535554|217|23.34|0.95|4.62|+|ENST00000556638|AKAP6,AKAP6	ENSG00000151320|ENST00000280979|AKAP6	ENSG00000151320|ENST00000280979|AKAP6	MULTI-SECPEP	A375_MHC_IP_R2	2	451.19140625	2	451.7633	901.512048	-0.2905	-0.00013124	0.68708	0.0003104	0.39658	0.00017916	451.76381414026014	130.04	0.20203	130.25	130.15	130.35	0.21419					5	3	2	0	0	0	0.20094	1	51089	51089		53.576	0	1	1498100			32072	5894	23239	23407	31287	31287					0.057352493203779886
LLTVLERVH	9	Unmodified	_LLTVLERVH_					0	0	0		ENSG00000172478|ENST00000388934|MAB21L4	ENSG00000172478|ENST00000388934|MAB21L4	ENSG00000172478|ENST00000388934|MAB21L4	MULTI-MSMS	A375_MHC_IP_R1	1	360.9573974609375	3	360.557236	1078.64988	0.21224	7.6524E-05	0.20453	7.3746E-05	0.41677	0.00015027	360.55724910193044	52.091	0.60945	52.091	51.829	52.438	0					22	11	3	0	0	0	0.6324	1	18533	18533		8.9762	0	1	2688200			32073	7714	23240	23408	31288	31288					0.11369997639690155
LLTVLERVH	9	Unmodified	_LLTVLERVH_					0	0	0		ENSG00000172478|ENST00000388934|MAB21L4	ENSG00000172478|ENST00000388934|MAB21L4	ENSG00000172478|ENST00000388934|MAB21L4	MULTI-MSMS	A375_MHC_IP_R2	2	360.9571228027344	3	360.557236	1078.64988	-0.34475	-0.0001243	-0.20835	-7.5122E-05	-0.5531	-0.00019942	360.5571247029701	51.188	0.45637	51.94	51.763	52.219	0.75225					17	8	3	0	0	0	0.34064	1	19289	19289		20.581	0	1	2589000			32074	7714	23240	23408	31289	31289					0.11369997639690155
LLTVMKCENY	10	Unmodified	_LLTVMKCENY_					0	0	0		ENST00000357055.7_1_2:32447135-32447225:+|nuORF	ENST00000357055.7_1_2:32447135-32447225:+|nuORF	ENST00000357055.7_1_2:32447135-32447225:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	405.6026611328125	3	405.203365	1212.58827	-0.3329	-0.00013489	-0.72186	-0.0002925	-1.0548	-0.00042739	405.5375818729603	22.61	0.40777	23.24	23.062	23.47	0.63014					14	7	3	0	0	0	0.93799	1	7241	7241		0.12286	0.039514	1	3079200			32075	10977	23241	23409	31290	31290					-0.009524381661321968
LLTWTLWI	8	Unmodified	_LLTWTLWI_					0	0	0		nc|ENSG00000174837|Q14246-2|ADGRE1;nc|ENSG00000174837|Q14246-3|ADGRE1;ENSG00000174837|ENST00000312053|ADGRE1;nc|ENSG00000174837|Q14246-4|ADGRE1;nc|ENSG00000174837|Q14246-5|ADGRE1	nc|ENSG00000174837|Q14246-2|ADGRE1	nc|ENSG00000174837|Q14246-2|ADGRE1	MULTI-MSMS	A375_MHC_IP_R2	2	522.7955932617188	2	523.307678	1044.6008	-0.80306	-0.00042025	2.3892	0.0012503	1.5862	0.00083006	523.3097824132509	71.911	1.0619	72.645	71.959	73.021	0.73421					32	20	3	0	0	0	0.70843	1	27299	27299		32.117	1.4804	1	3339900			32076	7905	23242	23410	31291	31291					0.0802870935071951
LLVAETLSNY	10	Unmodified	_LLVAETLSNY_					0	0	0			REV__NIPSNAP1|p.P96L|1|0.19|ENSG00000184117|chr22:29569273-29569273|G/A|missense_variant	REV__NIPSNAP1|p.P96L|1|0.19|ENSG00000184117|chr22:29569273-29569273|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	561.1561279296875	2	561.805697	1121.59684	-0.88433	-0.00049682	-0.93159	-0.00052337	-1.8159	-0.0010202	561.805375749675	60.564	0.56069	61.309	60.955	61.515	0.74503					14	10	2	0	0	0	0.8125	1	22856	22856		13.042	8.2865	1	985280	+		32077	27605	23243	23411	31292	31292					0.04090575066334168
LLVAETLSNY	10	Unmodified	_LLVAETLSNY_					0	0	0			REV__NIPSNAP1|p.P96L|1|0.19|ENSG00000184117|chr22:29569273-29569273|G/A|missense_variant	REV__NIPSNAP1|p.P96L|1|0.19|ENSG00000184117|chr22:29569273-29569273|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	561.805697	1121.59684	-0.48945	-0.00027497	0.36902	0.00020732	-0.12043	-6.7659E-05	562.3073693429602	61.43	0.30727	61.43	61.227	61.534	0	0.060319	0.00058669	NaN	13.042	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	947930	+		32078	27605	23243	23411							0.04090575066334168
LLVASEVASL	10	Unmodified	_LLVASEVASL_					0	0	0			REV__ENSG00000197428|ENST00000641817|OR51D1	REV__ENSG00000197428|ENST00000641817|OR51D1	MULTI-SECPEP	A375_MHC_IP_R1	1	500.6249084472656	2	501.297507	1000.58046	-0.4289	-0.00021501	-1.2473	-0.00062529	-1.6763	-0.0008403	501.29739137917727	58.244	0.7619	58.244	57.974	58.736	0					25	14	2	0	0	0	0.85226	1	21003	21003		10.074	0	1	2061800	+		32079	22287	23244	23412	31293	31293					0.08019493900224006
LLVCVKWNMV	10	Unmodified	_LLVCVKWNMV_					0	0	0			REV__ENSG00000276240|ENST00000641792|OR4E1	REV__ENSG00000276240|ENST00000641792|OR4E1	MULTI-SECPEP	A375_MHC_IP_R2	2	602.669677734375	2	602.83268	1203.65081	-0.54037	-0.00032575	-1.4526	-0.00087566	-1.9929	-0.0012014	602.8318108876373	65.154	0.35442	65.892	65.664	66.018	0.73811					10	6	2	0	0	0	0.91556	1	24637	24637		14.838	6.0929	1	1466900	+		32080	22968	23245	23413	31294	31294					0.05712752692693357
LLVDFLQSL	9	Unmodified	_LLVDFLQSL_					0	0	0		nc|ENSG00000087237|P11597-2|CETP;ENSG00000087237|ENST00000200676|CETP	nc|ENSG00000087237|P11597-2|CETP	nc|ENSG00000087237|P11597-2|CETP	MULTI-SECPEP	A375_MHC_IP_R1	1	524.179443359375	2	524.307875	1046.6012	-0.3008	-0.00015771	-0.20458	-0.00010726	-0.50538	-0.00026498	524.3075415586284	109.94	1.0686	109.94	109.37	110.44	0					20	20	2	0	0	0	0.24324	1	40307	40307		45.7	1.8413	1	939250			32081	1863	23246	23414	31295	31295					0.07976084279903262
LLVDFLQSL	9	Unmodified	_LLVDFLQSL_					0	0	0		nc|ENSG00000087237|P11597-2|CETP;ENSG00000087237|ENST00000200676|CETP	nc|ENSG00000087237|P11597-2|CETP	nc|ENSG00000087237|P11597-2|CETP	MULTI-SECPEP	A375_MHC_IP_R2	2	524.1791381835938	2	524.307875	1046.6012	-0.45086	-0.00023639	0.46089	0.00024165	0.010029	5.2583E-06	524.307976342183	109.03	0.51203	109.77	109.52	110.03	0.74684					10	9	2	0	0	0	0.53748	1	41203	41203		13.042	0	1	1140800			32082	1863	23246	23414	31296	31296					0.07976084279903262
LLVDRLQV	8	Unmodified	_LLVDRLQV_					0	0	0			REV__SPTBN5|p.Q2777Rfs*33|1|0.22|ENSG00000137877|chr15:41857606-41857609|CTGG/-|frameshift_variant	REV__SPTBN5|p.Q2777Rfs*33|1|0.22|ENSG00000137877|chr15:41857606-41857609|CTGG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	478.15948486328125	2	478.300384	954.586216	-0.40661	-0.00019448	0.34289	0.00016401	-0.063714	-3.0474E-05	478.30056699555985	101	0.7684	101.76	101.34	102.11	0.76428					16	14	2	0	0	0	0.96296	1	38345	38345		0.69038	0	1	725560	+		32083	19047	23247	23415	31297	31297					0.10710637202566886
LLVEAFSEV	9	Unmodified	_LLVEAFSEV_					0	0	0			REV__nc|ENSG00000151779|A2RRP1-2|NBAS	REV__nc|ENSG00000151779|A2RRP1-2|NBAS	MULTI-SECPEP	A375_MHC_IP_R1	1	504.1754455566406	2	503.776408	1005.53826	-0.34728	-0.00017495	-1.1392	-0.00057388	-1.4864	-0.00074883	503.7757492552636	103.95	0.50728	103.95	103.63	104.13	0					13	9	2	0	0	0	0.47368	1	38188	38188		34.102	0	1	1749500	+		32084	19773	23248	23416	31298	31298					0.03571518491855841
LLVEHGAS	8	Unmodified	_LLVEHGAS_					0	0	0		ENSG00000167077|ENST00000401548|MEI1;MEI1|p.P901S|1|0.26|ENSG00000167077|chr22:41776258-41776258|C/T|missense_variant;ENST00000473736.5_1_22:42172081-42174878:+|nuORF;nc|ENSG00000167077|Q5TIA1-5|MEI1;nc|ENSG00000167077|Q5TIA1-3|MEI1;nc|ENSG00000167077|Q5TIA1-2|MEI1	ENSG00000167077|ENST00000401548|MEI1	ENSG00000167077|ENST00000401548|MEI1	MULTI-MSMS	A375_MHC_IP_R1	1	413.2787780761719	2	413.226885	824.439217	0.27171	0.00011228	-0.10275	-4.2459E-05	0.16896	6.982E-05	413.22677522136985	31.744	0.61457	31.744	31.565	32.179	0					25	11	3	0	0	0	0.6817	1	10253	10253		40.449	2.2974	1	15412000			32085	7150	23249	23417	31299	31299					0.019975403176204054
LLVEKEEAVNF	11	Unmodified	_LLVEKEEAVNF_					0	0	0			REV__CEACAM1|p.G48E|1|0.12|ENSG00000079385|chr19:42527322-42527322|C/T|missense_variant	REV__CEACAM1|p.G48E|1|0.12|ENSG00000079385|chr19:42527322-42527322|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	645.7637939453125	2	645.850635	1289.68672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.353	1	89.085	88.585	89.585	0.7318								0	0	0	0.15837	1	33622	33622		15.248	5.8654	1		+		32086	15630	23250	23418	31300	31300					0.053462046749018555
LLVEKMDHV	9	Oxidation (M)	_LLVEKM(Oxidation (M))DHV_		LLVEKM(1)DHV		LLVEKM(61)DHV	0	0	1		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	A375_MHC_IP_R2	2	550.6917724609375	2	550.294442	1098.57433	-0.64217	-0.00035338	-1.649	-0.00090745	-2.2912	-0.0012608	550.2927919602174	93.627	1.0156	94.371	93.752	94.768	0.74474					23	19	2	0	0	0	0.05754	1	35612	35612		61.357	9.0891	1	1911600			32087	4099;14587	23251	23419	31301	31301		212			0.028986523970615963
LLVFEVWIL	9	Unmodified	_LLVFEVWIL_					0	0	0		ST3GAL5|p.G76E|1|0.36|ENSG00000115525|chr2:85861272-85861272|C/T|missense_variant	ST3GAL5|p.G76E|1|0.36|ENSG00000115525|chr2:85861272-85861272|C/T|missense_variant	ST3GAL5|p.G76E|1|0.36|ENSG00000115525|chr2:85861272-85861272|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	378.9546203613281	3	377.898599	1130.67397	0.43084	0.00016281	0.29984	0.00011331	0.73068	0.00027612	377.89872181503563	40.634	0.70765	40.634	40.406	41.114	0					36	13	4	0	0	0	0.68046	1	13952	13952		8.7454	1.6437	1	11891000			32088	29253	23252	23420	31302	31302					0.11385838073329069
LLVFFDEQMR	10	Unmodified	_LLVFFDEQMR_					0	0	0		ENST00000355413.8_1_7:141311070-141315328:+|nuORF	ENST00000355413.8_1_7:141311070-141315328:+|nuORF	ENST00000355413.8_1_7:141311070-141315328:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	433.1559753417969	3	433.225158	1296.65364	-0.10963	-4.7493E-05	1.7625	0.00076354	1.6528	0.00071605	433.22600113015733	33.544	0.40306	33.544	33.445	33.848	0					11	7	2	0	0	0	0.92199	1	11014	11014		10.899	5.1155	1	1551300			32089	10952	23253	23421	31303	31303					0.017182993511823952
LLVFFDEQMR	10	Unmodified	_LLVFFDEQMR_					0	0	0		ENST00000355413.8_1_7:141311070-141315328:+|nuORF	ENST00000355413.8_1_7:141311070-141315328:+|nuORF	ENST00000355413.8_1_7:141311070-141315328:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	433.2851867675781	3	433.225158	1296.65364	-0.31943	-0.00013839	2.8127	0.0012185	2.4932	0.0010801	433.22660493045566	32.873	0.55922	33.61	33.265	33.825	0.73692					14	10	2	0	0	0	0.68889	1	11784	11784		14.218	1.3456	1	2450700			32090	10952	23253	23421	31304	31304					0.017182993511823952
LLVGCTECAL	10	Unmodified	_LLVGCTECAL_					0	0	0		ENSG00000178358|ENST00000317834|OR2D3	ENSG00000178358|ENST00000317834|OR2D3	ENSG00000178358|ENST00000317834|OR2D3	MULTI-SECPEP	A375_MHC_IP_R2	2	510.6732177734375	2	511.256471	1020.49839	-0.76117	-0.00038915	-2.2949	-0.0011733	-3.0561	-0.0015625	511.25457290534655	105.88	0.66351	106.64	106.32	106.99	0.75977					20	12	3	0	0	0	0.76414	1	40131	40131		26.884	8.7487	1	1425200			32091	8154	23254	23422	31305	31305					-0.011040677747246264
LLVGWGGG	8	Unmodified	_LLVGWGGG_					0	0	0		ENST00000496905.1_1_1:1309926-1310526:-|nuORF	ENST00000496905.1_1_1:1309926-1310526:-|nuORF	ENST00000496905.1_1_1:1309926-1310526:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	380.1137390136719	2	379.713414	757.412274	0.3333	0.00012656	0.56999	0.00021643	0.9033	0.00034299	379.7135162004878	77.401	0.96593	77.401	77.032	77.998	0					21	18	2	0	0	0	0.77781	1	28237	28237		2.8892	0	1	2091200			32092	12733	23255	23423	31306	31306					0.023864764971108343
LLVHLYNKQY	10	Unmodified	_LLVHLYNKQY_					0	0	0			REV__ENST00000254166.3_1_19:58944554-58944689:-|nuORF	REV__ENST00000254166.3_1_19:58944554-58944689:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	646.3610229492188	2	645.86388	1289.71321	-0.29212	-0.00018867	-0.14243	-9.1989E-05	-0.43454	-0.00028066	645.8637601406203	88.573	0.66167	88.573	88.205	88.867	0					26	12	3	0	0	0	0.5761	1	32562	32562		20.454	2.3073	1	5463800	+		32093	23137	23256	23424	31307	31307					0.07993938356889885
LLVHLYNKQY	10	Unmodified	_LLVHLYNKQY_					0	0	0			REV__ENST00000254166.3_1_19:58944554-58944689:-|nuORF	REV__ENST00000254166.3_1_19:58944554-58944689:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	646.2637939453125	2	645.86388	1289.71321	-0.29212	-0.00018867	-0.14243	-9.1989E-05	-0.43454	-0.00028066	645.8637601406203	88.573	0.66167	88.573	88.205	88.867	0					26	12	3	0	0	0	0.91328	1	32514	32514		20.454	20.454	1	5463800	+		32094	23137	23256	23424	31308	31308					0.07993938356889885
LLVHPGPL	8	Unmodified	_LLVHPGPL_					0	0	0		KIR2DL3|p.A33V|1|0.28|ENSG00000243772|chr19:54742007-54742007|C/T|missense_variant	KIR2DL3|p.A33V|1|0.28|ENSG00000243772|chr19:54742007-54742007|C/T|missense_variant	KIR2DL3|p.A33V|1|0.28|ENSG00000243772|chr19:54742007-54742007|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	423.665771484375	2	423.265813	844.517074	0.041474	1.7554E-05	0.38263	0.00016196	0.42411	0.00017951	423.2658795141739	79.291	0.56289	79.291	79.011	79.574	0					16	10	2	0	0	0	0.77554	1	28951	28951		11.114	0	1	1623300			32095	14220	23257	23425	31309	31309					0.08859597973662403
LLVHPGPL	8	Unmodified	_LLVHPGPL_					0	0	0		KIR2DL3|p.A33V|1|0.28|ENSG00000243772|chr19:54742007-54742007|C/T|missense_variant	KIR2DL3|p.A33V|1|0.28|ENSG00000243772|chr19:54742007-54742007|C/T|missense_variant	KIR2DL3|p.A33V|1|0.28|ENSG00000243772|chr19:54742007-54742007|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	423.265813	844.517074	-0.10321	-4.3687E-05	-0.048117	-2.0366E-05	-0.15133	-6.4054E-05	423.26567630062306	78.321	0.50729	79.064	78.878	79.385	0.74318	-0.11354	-0.00019762	NaN	11.114	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1035400			32096	14220	23257	23425							0.08859597973662403
LLVIFFAGFIY	11	Unmodified	_LLVIFFAGFIY_					0	0	0			REV__tr|U7T2K1|U7T2K1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00479PE=4SV=1	REV__tr|U7T2K1|U7T2K1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00479PE=4SV=1	MSMS	A375_MHC_IP_R2	2	651.515869140625	2	651.878468	1301.74238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.01	1	105.77	105.27	106.27	0.76308								0	0	0	0.1629	1	39723	39723		3.5965	0	1		+		32097	28747	23258	23426	31310	31310					0.10358082653169731
LLVILKLC	8	Unmodified	_LLVILKLC_					0	0	0		nc|ENSG00000120645|Q9UPP2-2|IQSEC3;ENSG00000120645|ENST00000538872|IQSEC3	nc|ENSG00000120645|Q9UPP2-2|IQSEC3	nc|ENSG00000120645|Q9UPP2-2|IQSEC3	MULTI-SECPEP	A375_MHC_IP_R1	1	915.2388916015625	1	914.610722	913.603446	0.1511	0.0001382	-1.4207	-0.0012994	-1.2696	-0.0011612	914.6101338567987	116.85	2.0321	116.85	115.53	117.56	0					51	39	2	0	0	0	0.972	1	42461	42461		2.8892	0	1	9446500			32098	3670	23259	23427	31311	31311					0.14318841483998312
LLVILSKLLK	10	Unmodified	_LLVILSKLLK_					0	0	0		ENST00000337273.9_1_5:72205645-72205852:+|nuORF	ENST00000337273.9_1_5:72205645-72205852:+|nuORF	ENST00000337273.9_1_5:72205645-72205852:+|nuORF	MSMS	A375_MHC_IP_R2	2	570.7163696289062	2	570.409935	1138.80532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.76	1	105.52	105.02	106.02	0.76308								0	0	0	0.15628	1	39630	39630		0.45834	0	1				32099	10827	23260	23428	31312	31312					0.24146648441205798
LLVKKHSKI	9	Unmodified	_LLVKKHSKI_					0	0	0		ENST00000497512.5_1_4:78078410-78106259:+|nuORF;nc|ENSG00000138764|Q16589-2|CCNG2;ENSG00000138764|ENST00000316355|CCNG2	ENST00000497512.5_1_4:78078410-78106259:+|nuORF	ENST00000497512.5_1_4:78078410-78106259:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	356.3094177246094	3	355.90961	1064.707	0.11871	4.2251E-05	-0.3396	-0.00012087	-0.22089	-7.8617E-05	355.9095352065022	62.627	0.8198	62.627	62.198	63.018	0					28	15	3	0	0	0	0.78753	1	22628	22628		4.897	2.1618	1	3552000			32100	12745	23261	23429	31313	31313					0.17723464916048215
LLVKKLLIMKV	11	Unmodified	_LLVKKLLIMKV_					0	0	0			REV__ENST00000346348.7_1_6:86243499-86246529:-|nuORF	REV__ENST00000346348.7_1_6:86243499-86246529:-|nuORF	MSMS	A375_MHC_IP_R2	2	649.7901000976562	2	649.45382	1296.89309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.28	1	144.3	143.8	144.8	0.024414								0	0	0	0.1636	1	56362	56362		0	0	1		+		32101	23774	23262	23430	31314	31314					0.2565152604031482
LLVKKLLITAI	11	Unmodified	_LLVKKLLITAI_					0	0	0			REV__ENSG00000111254|ENST00000228850|AKAP3	REV__ENSG00000111254|ENST00000228850|AKAP3	MSMS	A375_MHC_IP_R1	1	612.739013671875	2	612.936317	1223.85808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.883	1	99.883	99.383	100.38	0								0	0	0	0.16334	1	36701	36701		1.3295	0	1		+		32102	17660	23263	23431	31315	31315					0.25510606504030875
LLVKWLKDLE	10	Unmodified	_LLVKWLKDLE_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;ENST00000545078.1_1_12:124411346-124414067:+|nuORF;ENST00000492261.5_1_12:124409716-124414381:+|nuORF	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-SECPEP	A375_MHC_IP_R2	2	628.7847290039062	2	628.884281	1255.75401	-0.62849	-0.00039525	-1.2146	-0.00076381	-1.843	-0.0011591	628.8823275358831	148.57	1.329	148.58	147.63	148.95	0.018707					72	47	2	0	0	0	0.95026	1	57659	57659		0.45834	0	1	80532			32103	9182	23264	23432	31316	31316					0.13636279676507002
LLVLAGRQ	8	Unmodified	_LLVLAGRQ_					0	0	0			REV__ENSG00000180638|ENST00000433844|SLC47A2	REV__ENSG00000180638|ENST00000433844|SLC47A2	MSMS	A375_MHC_IP_R1	1	435.4159240722656	2	435.281995	868.549437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.76	1	140.76	140.26	141.26	0								0	0	0	0.16876	1	54052	54052		0.69038	0	1		+		32104	21619	23265	23433	31317	31317					0.10990385376669565
LLVLISPCFV	10	Unmodified	_LLVLISPCFV_					0	0	0			REV__ENST00000397492.1_1_22:32346295-32352776:+|nuORF	REV__ENST00000397492.1_1_22:32346295-32352776:+|nuORF	MSMS	A375_MHC_IP_R1	1	552.3643188476562	2	552.330296	1102.64604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.95	1	144.95	144.45	145.45	0								0	0	0	0.15591	1	55577	55577		1.6526	0.17072	1		+		32105	24358	23266	23434	31318	31318					0.09882191821566266
LLVLLVLPDLP	11	Unmodified	_LLVLLVLPDLP_					0	0	0			REV__ENST00000225964.9_1_17:48265286-48266811:-|nuORF	REV__ENST00000225964.9_1_17:48265286-48266811:-|nuORF	MSMS	A375_MHC_IP_R1	1	402.5797119140625	3	402.268692	1203.78425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.621	1	68.621	68.121	69.121	0								0	0	0	0.16358	1	24887	24887		0.094841	0.094841	1		+		32106	23062	23267	23435	31319	31319					0.19050638341695958
LLVLQLIRRR	10	Unmodified	_LLVLQLIRRR_					0	0	0		ENSG00000204301|ENST00000375023|NOTCH4;NOTCH4|p.A1496Lfs*19|1|0.11|ENSG00000204301|chr6:32198975-32198976|-/CCCAAGTCTCCCTTTTTAGTAGAAAGTAG|frameshift_variant;nc|ENSG00000204301|Q99466-2|NOTCH4	ENSG00000204301|ENST00000375023|NOTCH4	ENSG00000204301|ENST00000375023|NOTCH4	MSMS	A375_MHC_IP_R1	1	640.4403686523438	2	640.437881	1278.86121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.272	1	93.272	92.772	93.772	0								0	0	0	0.15417	1	34285	34285		7.2892	2.96	1				32107	9425	23268	23436	31320	31320					0.23293294401401
LLVLVLLKLKK	11	Unmodified	_LLVLVLLKLKK_					0	0	0			REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF	REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF	MSMS	A375_MHC_IP_R1	1	640.4647216796875	2	640.475609	1278.93667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101	1	101	100.5	101.5	0								0	0	0	0.16331	1	37122	37122		1.4819	1.4819	1		+		32108	23071	23269	23437	31321	31321					0.3083545880908787
LLVLVLVLLV	10	Unmodified	_LLVLVLVLLV_					0	0	0		nc|ENSG00000127838|Q8N490-3|PNKD	nc|ENSG00000127838|Q8N490-3|PNKD	nc|ENSG00000127838|Q8N490-3|PNKD	MSMS	A375_MHC_IP_R1	1	547.5877075195312	2	547.401579	1092.7886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.11	1	16.11	15.61	16.61	0								0	0	0	0.15642	1	3734	3734		0	0	1				32109	14588	23270	23438	31322	31322					0.24592147555244992
LLVLVLVLLV	10	Unmodified	_LLVLVLVLLV_					0	0	0		nc|ENSG00000127838|Q8N490-3|PNKD	nc|ENSG00000127838|Q8N490-3|PNKD	nc|ENSG00000127838|Q8N490-3|PNKD	MSMS	A375_MHC_IP_R2	2	365.6321716308594	3	365.270145	1092.7886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.03	1	143.06	142.56	143.56	0.030731								0	0	0	0.15642	1	55908	55908		0	0	1				32110	14588	23270	23438	31323	31323					0.24592147555244992
LLVNRQIQFE	10	Unmodified	_LLVNRQIQFE_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-SECPEP	A375_MHC_IP_R2	2	630.7587280273438	2	630.358962	1258.70337	-0.94348	-0.00059473	0.35199	0.00022188	-0.59149	-0.00037285	630.3590491229962	36.053	0.51132	36.817	36.587	37.099	0.76338					13	9	2	0	0	0	0.83355	1	13117	13117		17.113	8.9574	1	3734100			32111	9382	23271	23439	31324	31324					0.08436750351506817
LLVNRQIQFE	10	Unmodified	_LLVNRQIQFE_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-MATCH	A375_MHC_IP_R1	1		2	630.358962	1258.70337	-0.74046	-0.00046676	1.0762	0.00067842	0.33578	0.00021166	630.359310387732	36.949	0.5038	36.949	36.695	37.198	0	0.06618	0.00052316	NaN	17.113	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2751300			32112	9382	23271	23439							0.08436750351506817
LLVQGGVG	8	Unmodified	_LLVQGGVG_					0	0	0		nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	MSMS	A375_MHC_IP_R1	1	371.6275634765625	2	371.726521	741.438489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.454	1	57.454	56.954	57.954	0								0	0	0	0.16876	1	20610	20610		0.79363	0	1				32113	14568	23272	23440	31325	31325					0.057427456685900324
LLVQINTDP	9	Unmodified	_LLVQINTDP_					0	0	0			REV__ENSG00000204624|ENST00000294484|DISP3	REV__ENSG00000204624|ENST00000294484|DISP3	MULTI-SECPEP	A375_MHC_IP_R1	1	506.9908142089844	2	506.787307	1011.56006	-0.33274	-0.00016863	-0.64176	-0.00032524	-0.9745	-0.00049386	507.2884829142258	36.076	0.40588	36.076	35.778	36.184	0					11	7	2	0	0	0	0.67483	1	12011	12011		14.838	0	1	950370	+		32114	22532	23273	23441	31326	31326					0.05474323240423473
LLVRGPLAL	9	Unmodified	_LLVRGPLAL_					0	0	0			REV__ENSG00000166289|ENST00000436066|PLEKHF1	REV__ENSG00000166289|ENST00000436066|PLEKHF1	MULTI-SECPEP	A375_MHC_IP_R2	2	476.5986022949219	2	476.32112	950.627687	-0.43641	-0.00020787	0.11862	5.65E-05	-0.31779	-0.00015137	476.3211711664647	91.493	0.5591	92.227	91.868	92.427	0.7345					14	10	2	0	0	0	0.55359	1	34713	34713		21.747	0	1	1422100	+		32115	20667	23274	23442	31327	31327					0.15039817961883273
LLVRKKRL	8	Unmodified	_LLVRKKRL_					0	0	0		nc|ENSG00000050130|Q9P055-2|JKAMP;nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	MSMS	A375_MHC_IP_R2	2	513.4692993164062	2	513.368936	1024.72332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.496	1	76.237	75.737	76.737	0.74052								0	0	0	0.16876	1	28659	28659		6.3541	0	1				32116	1227	23275	23443	31328	31328					0.21194590872778463
LLVRNIHV	8	Unmodified	_LLVRNIHV_					0	0	0		nc|ENSG00000157617|Q9Y426-2|C2CD2;nc|ENSG00000157617|Q9Y426-3|C2CD2;ENSG00000157617|ENST00000380486|C2CD2	nc|ENSG00000157617|Q9Y426-2|C2CD2	nc|ENSG00000157617|Q9Y426-2|C2CD2	MULTI-MSMS	A375_MHC_IP_R2	2	482.70843505859375	2	482.308544	962.602535	-0.38628	-0.00018631	-0.18214	-8.7846E-05	-0.56842	-0.00027415	482.3084050413337	149.98	1.1619	149.99	148.85	150.01	0.018265					94	50	2	0	0	0	0.77842	1	58116	58116		0.69038	0	1	217010			32117	6256	23276	23444	31329	31329					0.11973763159312512
LLVSKRKSD	9	Unmodified	_LLVSKRKSD_					0	0	0			REV__ENSG00000163359|ENST00000295550|COL6A3	REV__ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	A375_MHC_IP_R1	1	523.7220458984375	2	523.321848	1044.62914	-0.80243	-0.00041993	0.22986	0.00012029	-0.57257	-0.00029964	523.3218663856467	137.2	1.3324	137.2	136.97	138.31	0					73	25	5	0	0	0	0.75764	1	53003	53003		1.8442	0	1	49923000	+		32118	20352	23277	23445	31330	31330					0.10861407259994849
LLVSLYIHMFL	11	Unmodified	_LLVSLYIHMFL_					0	0	0		ENSG00000176136|ENST00000589410|MC5R	ENSG00000176136|ENST00000589410|MC5R	ENSG00000176136|ENST00000589410|MC5R	MSMS	A375_MHC_IP_R1	1	675.2859497070312	2	674.888509	1347.76247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.3	1	130.3	129.8	130.8	0								0	0	0	0.1624	1	50138	50138		6.2058	0.9089	1				32119	8002	23278	23446	31331	31331					0.10249510321455091
LLVTKKPSI	9	Unmodified	_LLVTKKPSI_					0	0	0			REV__tr|U7T681|U7T681_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00143PE=3SV=1	REV__tr|U7T681|U7T681_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00143PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	500.1361083984375	2	499.83406	997.653567	-0.40697	-0.00020342	-0.15333	-7.6642E-05	-0.5603	-0.00028006	499.83372136837204	61.457	0.25481	61.457	61.331	61.585	0					5	4	2	0	0	0	0.71541	1	22161	22161		7.2892	0	1	1023700	+		32120	28857	23279	23447	31332	31332					0.1546466741350514
LLVVILIVKK	10	Unmodified	_LLVVILIVKK_					0	0	0		ENST00000531050.5_1_6:128321419-128718758:-|nuORF;nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK;ENST00000524481.5_1_6:128321419-128841710:-|nuORF	ENST00000531050.5_1_6:128321419-128718758:-|nuORF;ENST00000524481.5_1_6:128321419-128841710:-|nuORF	ENST00000531050.5_1_6:128321419-128718758:-|nuORF	MSMS	A375_MHC_IP_R1	1	569.421875	2	569.420303	1136.82605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.56	1	120.56	120.06	121.06	0								0	0	0	0.15642	1	44679	44679		0	0	1				32121	13164;13057	23280	23448	31333	31333					0.2631123882090378
LLVVKIKRKF	10	Unmodified	_LLVVKIKRKF_					0	0	0			REV__SLC26A7|p.P260L|1|0.21|ENSG00000147606|chr8:91334431-91334431|C/T|missense_variant	REV__SLC26A7|p.P260L|1|0.21|ENSG00000147606|chr8:91334431-91334431|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	415.2873840332031	3	415.291943	1242.854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.324	1	57.324	56.824	57.824	0								0	0	0	0.15577	1	20560	20560		2.086	0	1		+		32122	27982	23281	23449	31334	31334					0.242285618009646
LLVWAALNIY	10	Unmodified	_LLVWAALNIY_					0	0	0		ENST00000292782.8_1_3:182662467-182662704:-|nuORF	ENST00000292782.8_1_3:182662467-182662704:-|nuORF	ENST00000292782.8_1_3:182662467-182662704:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	392.5875244140625	3	392.56562	1174.67503	-0.45979	-0.0001805	1.5925	0.00062517	1.1327	0.00044467	392.9008364531867	24.164	0.56114	24.808	24.499	25.06	0.64368					24	10	3	0	0	0	0.7116	1	7886	7886		7.1017	1.8048	1	4454400			32123	10479	23282	23450	31335	31335					0.09468052442207409
LLVWMDKC	8	Unmodified	_LLVWMDKC_					0	0	0			REV__ENSG00000135749|ENST00000258229|PCNX2	REV__ENSG00000135749|ENST00000258229|PCNX2	MULTI-SECPEP	A375_MHC_IP_R1	1	504.1873474121094	2	504.256274	1006.49799	-0.39602	-0.0001997	-0.64823	-0.00032687	-1.0443	-0.00052657	504.2559186192719	64.253	0.55633	64.253	63.99	64.546	0					16	10	2	0	0	0	0.93416	1	23206	23206		14.582	2.0501	1	1537400	+		32124	18881	23283	23451	31336	31336					-0.004994427039150651
LLVYVRFEHD	10	Unmodified	_LLVYVRFEHD_					0	0	0		ENSG00000232040|ENST00000452236|SCAND3	ENSG00000232040|ENST00000452236|SCAND3	ENSG00000232040|ENST00000452236|SCAND3	MULTI-SECPEP	A375_MHC_IP_R1	1	646.24609375	2	645.845687	1289.67682	-0.26621	-0.00017193	-0.16569	-0.00010701	-0.43191	-0.00027895	645.8454091959226	82.063	0.66061	82.063	81.758	82.418	0					27	12	3	0	0	0	0.70528	1	29971	29971		32.786	16.637	1	7404500			32125	9726	23284	23452	31337	31337					0.04357061460177647
LLWAMLIIV	9	Unmodified	_LLWAMLIIV_					0	0	0		ENSG00000053501|ENST00000263897|USE1;ENST00000600970.5_1_19:17327144-17330619:+|nuORF	ENSG00000053501|ENST00000263897|USE1	ENSG00000053501|ENST00000263897|USE1	MULTI-SECPEP	A375_MHC_IP_R1	1	358.29718017578125	3	357.89268	1070.65621	0.18199	6.5134E-05	-0.82223	-0.00029427	-0.64024	-0.00022914	357.89239625860154	20.543	0.40777	20.543	20.334	20.742	0					20	7	4	0	0	0	0.50702	1	5218	5218		25.399	25.399	1	6338300			32126	1248	23285	23453	31338	31338					0.12370799546806666
LLWCRRSL	8	Unmodified	_LLWCRRSL_					0	0	0			REV__ENST00000258947.7_3_17:46908404-46919143:+|nuORF	REV__ENST00000258947.7_3_17:46908404-46919143:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	523.225830078125	2	523.800029	1045.5855	-0.29492	-0.00015448	-2.1574	-0.0011301	-2.4524	-0.0012845	523.7988081888752	93.008	0.30554	93.008	92.871	93.176	0					7	5	2	0	0	0	0.91495	1	34186	34186		12.532	0	1	1602700	+		32127	23170	23286	23454	31339	31339					0.06453519281853914
LLWEAGSEA	9	Unmodified	_LLWEAGSEA_					0	0	0		ENSG00000113209|ENST00000231134|PCDHB5	ENSG00000113209|ENST00000231134|PCDHB5	ENSG00000113209|ENST00000231134|PCDHB5	MULTI-MSMS	A375_MHC_IP_R1	1	975.3585205078125	1	975.478188	974.470912	-0.068249	-6.6576E-05	-2.0398	-0.0019897	-2.108	-0.0020563	975.4773588001964	85.793	0.81162	85.793	85.565	86.376	0					24	15	3	0	0	0	0.040308	1	31427	31427		68.081	35.775	1	3370900			32128	3131	23287	23455	31340	31340					-0.017345117190984638
LLWEAGSEA	9	Unmodified	_LLWEAGSEA_					0	0	0		ENSG00000113209|ENST00000231134|PCDHB5	ENSG00000113209|ENST00000231134|PCDHB5	ENSG00000113209|ENST00000231134|PCDHB5	MULTI-MATCH	A375_MHC_IP_R2	2		1	975.478188	974.470912	0.10089	9.8414E-05	-1.0309	-0.0010056	-0.93003	-0.00090723	975.4773595520708	84.968	0.51212	85.704	85.472	85.984	0.73601	-0.044638	0.00021155	NaN	68.081	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2278500			32129	3131	23287	23455							-0.017345117190984638
LLWEQQHLL	9	Unmodified	_LLWEQQHLL_					0	0	0		ENST00000557046.1_1_14:69908965-69921585:+|nuORF;ENST00000031146.8_2_14:69890892-69921585:+|nuORF;ENST00000336643.9_1_14:69908863-69921585:+|nuORF	ENST00000557046.1_1_14:69908965-69921585:+|nuORF	ENST00000557046.1_1_14:69908965-69921585:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	590.7299194335938	2	590.329673	1178.64479	-0.27469	-0.00016216	0.55021	0.00032481	0.27552	0.00016265	590.329828779411	98.243	0.45572	98.243	97.999	98.455	0					15	8	2	0	0	0	0.67221	1	36102	36102		13.508	2.684	1	1852500			32130	10061	23288	23456	31341	31341					0.0626169377703718
LLWEQQHLL	9	Unmodified	_LLWEQQHLL_					0	0	0		ENST00000557046.1_1_14:69908965-69921585:+|nuORF;ENST00000031146.8_2_14:69890892-69921585:+|nuORF;ENST00000336643.9_1_14:69908863-69921585:+|nuORF	ENST00000557046.1_1_14:69908965-69921585:+|nuORF	ENST00000557046.1_1_14:69908965-69921585:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	590.7307739257812	2	590.329673	1178.64479	-0.73992	-0.0004368	1.5041	0.00088792	0.76418	0.00045112	590.3308357281126	97.399	0.45898	98.155	97.822	98.281	0.75586					15	8	2	0	0	0	0.5212	1	36978	36978		32.786	19.743	1	1379300			32131	10061	23288	23456	31342	31342					0.0626169377703718
LLWEVVSQL	9	Unmodified	_LLWEVVSQL_					0	0	0		nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	MULTI-SECPEP	A375_MHC_IP_R1	1	544.213134765625	2	543.813325	1085.6121	-0.8164	-0.00044397	-1.147	-0.00062375	-1.9634	-0.0010677	543.8139470129709	132.3	0.35088	132.3	132.03	132.38	0					10	6	3	0	0	0	0.71541	1	51035	51035		11.64	3.7301	1	1485600			32132	1607	23289	23457	31343	31343					0.07271486654190085
LLWEVVSQL	9	Unmodified	_LLWEVVSQL_					0	0	0		nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	MULTI-MATCH	A375_MHC_IP_R2	2		2	543.813325	1085.6121	-0.77909	-0.00042368	0.43507	0.0002366	-0.34403	-0.00018709	543.8139393652775	132.09	0.2542	132.28	132.2	132.46	0.18953	-0.012658	0.00040429	NaN	7.2892	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1674800			32133	1607	23289	23457							0.07271486654190085
LLWFDGLGDL	10	Unmodified	_LLWFDGLGDL_					0	0	0		ENST00000602788.5_1_17:45625668-45656767:+|nuORF	ENST00000602788.5_1_17:45625668-45656767:+|nuORF	ENST00000602788.5_1_17:45625668-45656767:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	383.9190979003906	3	383.53773	1147.59136	0.20433	7.837E-05	2.7257	0.0010454	2.9301	0.0011238	383.5376395448952	41.006	0.60545	41.006	40.559	41.164	0					23	11	3	0	0	0	0.92389	1	14062	14062		0.69767	0.5748	1	1838400			32134	13890	23290	23458	31344	31344					0.023468962745482713
LLWFVLFY	8	Unmodified	_LLWFVLFY_					0	0	0		nc|ENSG00000124568|Q14916-2|SLC17A1;ENSG00000124568|ENST00000244527|SLC17A1	nc|ENSG00000124568|Q14916-2|SLC17A1	nc|ENSG00000124568|Q14916-2|SLC17A1	MSMS	A375_MHC_IP_R2	2	550.6168823242188	2	550.812596	1099.61064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.38	1	105.15	104.65	105.65	0.76308								0	0	0	0.16876	1	39496	39496		11.114	3.2043	1				32135	3913	23291	23459	31345	31345					0.06481897356093214
LLWGSVPDA	9	Unmodified	_LLWGSVPDA_					0	0	0			REV__ENST00000537399.1_1_19:19313274-19313373:-|nuORF	REV__ENST00000537399.1_1_19:19313274-19313373:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	479.6896667480469	2	479.255643	956.496732	-0.43669	-0.00020928	0.17971	8.6128E-05	-0.25697	-0.00012316	479.25576166255183	75.128	0.55603	75.128	74.908	75.464	0					16	10	2	0	0	0	0.40079	1	27301	27301		24.674	6.5389	1	929720	+		32136	25925	23292	23460	31346	31346					0.01674382523174245
LLWIEREV	8	Unmodified	_LLWIEREV_					0	0	0			REV__PLXNB1|p.R934W|1|0.48|ENSG00000164050|chr3:48419276-48419276|G/A|missense_variant	REV__PLXNB1|p.R934W|1|0.48|ENSG00000164050|chr3:48419276-48419276|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	529.7034301757812	2	529.305667	1056.59678	-0.3339	-0.00017673	-2.2062	-0.0011677	-2.5401	-0.0013445	529.3039062704099	49.849	0.8162	49.849	49.285	50.101	0					32	15	3	0	0	0	0.8211	1	17699	17699		30.225	0	1	3493900	+		32137	27810	23293	23461	31347	31347					0.0707461985698501
LLWKGFFK	8	Unmodified	_LLWKGFFK_					0	0	0		IL4R|p.S114F|1|0.21|ENSG00000077238|chr16:27345000-27345000|C/T|missense_variant	IL4R|p.S114F|1|0.21|ENSG00000077238|chr16:27345000-27345000|C/T|missense_variant	IL4R|p.S114F|1|0.21|ENSG00000077238|chr16:27345000-27345000|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	519.7127685546875	2	519.810388	1037.60622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.3	1	145.3	144.8	145.8	0								0	0	0	0.16876	1	55701	55701		0.69038	0	1				32138	14159	23294	23462	31348	31348					0.08892432933180316
LLWKVLDLLC	10	Unmodified	_LLWKVLDLLC_					0	0	0			REV__ENSG00000253729|ENST00000314191|PRKDC	REV__ENSG00000253729|ENST00000314191|PRKDC	MULTI-SECPEP	A375_MHC_IP_R2	2	406.5960998535156	3	405.91051	1214.7097	-0.11331	-4.5992E-05	2.1518	0.00087343	2.0385	0.00082744	406.2456934768978	36.067	0.25568	36.832	36.692	36.948	0.76535					7	4	2	0	0	0	0.94363	1	13159	13159		5.4027	1.2132	1	850780	+		32139	22858	23295	23463	31349	31349					0.11093552258694217
LLWLKRGLK	9	Unmodified	_LLWLKRGLK_					0	0	0		nc|ENSG00000106086|Q96JA3-3|PLEKHA8;nc|ENSG00000106086|Q96JA3-2|PLEKHA8;ENSG00000106086|ENST00000449726|PLEKHA8;nc|ENSG00000293316|O95397|PLEKHA8P1;ENST00000256692.5_1_12:45566975-45568244:-|nuORF	nc|ENSG00000106086|Q96JA3-3|PLEKHA8	nc|ENSG00000106086|Q96JA3-3|PLEKHA8	MULTI-SECPEP	A375_MHC_IP_R1	1	1126.2586669921875	1	1126.74591	1125.73863	0.30442	0.000343	0.9849	0.0011097	1.2893	0.0014527	1126.7487284208253	108.87	0.65909	108.87	108.61	109.27	0					14	12	2	0	0	0	0.78798	1	40060	40060		1.6526	1.1943	1	2359500			32140	2667	23296	23464	31350	31350					0.18079457669978183
LLWMWWRRNRR	11	Unmodified	_LLWMWWRRNRR_					0	0	0		nc|ENSG00000158220|A0FGR9-2|ESYT3;ENST00000486831.5_1_3:138153640-138188991:+|nuORF;ENSG00000158220|ENST00000389567|ESYT3	nc|ENSG00000158220|A0FGR9-2|ESYT3	nc|ENSG00000158220|A0FGR9-2|ESYT3	MULTI-SECPEP	A375_MHC_IP_R1	1	558.1817626953125	3	558.308772	1671.90449	-0.48963	-0.00027336	2.77	0.0015465	2.2804	0.0012731	558.3102479139804	89.365	0.15434	89.365	89.272	89.426	0					4	2	2	0	0	0	1.0014	1	32794	32794		0	0	1	762240			32141	6294	23297	23465	31351	31351					0.0954116090701973
LLWPDLLPV	9	Unmodified	_LLWPDLLPV_					0	0	0			REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-SECPEP	A375_MHC_IP_R1	1	1065.8472900390625	1	1065.63429	1064.62702	0.034427	3.6686E-05	-2.5023	-0.0026665	-2.4679	-0.0026298	1065.631023331008	129.1	0.61148	129.1	128.89	129.5	0					16	11	2	0	0	0	0.69504	1	49556	49556		7.9102	0	1	27268000	+		32142	27340	23298	23466	31352	31352					0.09728978522161924
LLWQDSRY	8	Unmodified	_LLWQDSRY_					0	0	0		ENSG00000105364|ENST00000253099|MRPL4	ENSG00000105364|ENST00000253099|MRPL4	ENSG00000105364|ENST00000253099|MRPL4	MSMS	A375_MHC_IP_R2	2	540.7357788085938	2	540.777274	1079.53999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.122	1	87.855	87.355	88.355	0.733								0	0	0	0.16876	1	33132	33132		21.747	4.8044	1				32143	2593	23299	23467	31353	31353					0.003405723004561878
LLWRKLLWHQV	11	Unmodified	_LLWRKLLWHQV_					0	0	0		ENSG00000101438|ENST00000217420|SLC32A1	ENSG00000101438|ENST00000217420|SLC32A1	ENSG00000101438|ENST00000217420|SLC32A1	MSMS	A375_MHC_IP_R2	2	497.9704284667969	3	497.969751	1490.88742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.497	1	99.256	98.756	99.756	0.75977								0	0	0	0.1629	1	37367	37367		1.4551	0	1				32144	2294	23300	23468	31354	31354					0.16161563572882187
LLWRLNDLIVY	11	Unmodified	_LLWRLNDLIVY_					0	0	0			REV__ENSG00000106392|ENST00000436587|C1GALT1	REV__ENSG00000106392|ENST00000436587|C1GALT1	MSMS	A375_MHC_IP_R2	2	709.6128540039062	2	709.413737	1416.81292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.93	1	144.95	144.45	145.45	0.021408								0	0	0	0.16353	1	56597	56597		0.35063	0	1		+		32145	17445	23301	23469	31355	31355					0.12118755970823258
LLWSLGPTL	9	Unmodified	_LLWSLGPTL_					0	0	0			REV__nc|ENSG00000147804|Q6P5W5-2|SLC39A4	REV__nc|ENSG00000147804|Q6P5W5-2|SLC39A4	MULTI-SECPEP	A375_MHC_IP_R1	1	500.6563720703125	2	500.29731	998.580068	-0.6388	-0.00031959	-0.97987	-0.00049022	-1.6187	-0.00080982	500.2964947428406	133.46	0.60919	133.46	133.25	133.86	0					18	11	3	0	0	0	0.78348	1	51501	51501		1.8442	1.2427	1	2180400	+		32146	19608	23302	23470	31356	31356					0.08072118971062991
LLWSPWHYHWS	11	Unmodified	_LLWSPWHYHWS_					0	0	0			REV__ENSG00000184389|ENST00000442999|A3GALT2	REV__ENSG00000184389|ENST00000442999|A3GALT2	MULTI-MSMS	A375_MHC_IP_R2	2	756.7645874023438	2	756.364579	1510.7146	-1.1983	-0.00090637	0.89713	0.00067856	-0.30119	-0.00022781	756.3656162565985	60.329	0.46104	61.074	60.853	61.314	0.74503					19	8	3	0	0	0	0.7359	1	22832	22832		3.2813	0.28607	1	4196500	+		32147	21817	23303	23471	31357	31357					-0.02032427554354399
LLWTRKKEWWL	11	Unmodified	_LLWTRKKEWWL_					0	0	0			REV__nc|ENSG00000073712|Q96AC1-2|FERMT2	REV__nc|ENSG00000073712|Q96AC1-2|FERMT2	MULTI-MSMS	A375_MHC_IP_R1	1	521.0371704101562	3	520.301278	1557.882	-0.39752	-0.00020683	1.9093	0.00099343	1.5118	0.0007866	520.301407334825	71.051	0.86663	71.051	70.749	71.615	0					29	16	4	0	0	0	0.73502	1	25828	25828		4.1166	3.1031	1	3784800	+		32148	16622	23304	23472	31358	31358					0.12537839990409338
LLWTRKKEWWL	11	Unmodified	_LLWTRKKEWWL_					0	0	0			REV__nc|ENSG00000073712|Q96AC1-2|FERMT2	REV__nc|ENSG00000073712|Q96AC1-2|FERMT2	MULTI-SECPEP	A375_MHC_IP_R1	1	520.2368774414062	3	520.301278	1557.882	-0.39752	-0.00020683	1.9093	0.00099343	1.5118	0.0007866	520.301407334825	71.051	0.86663	71.051	70.749	71.615	0					29	16	4	0	0	0	0.99732	1	25801	25801		6.6235	6.2152	1	3784800	+		32149	16622	23304	23472	31359	31359					0.12537839990409338
LLWTRKKEWWL	11	Unmodified	_LLWTRKKEWWL_					0	0	0			REV__nc|ENSG00000073712|Q96AC1-2|FERMT2	REV__nc|ENSG00000073712|Q96AC1-2|FERMT2	MULTI-MSMS	A375_MHC_IP_R2	2	520.7024536132812	3	520.301278	1557.882	-0.58759	-0.00030573	2.0752	0.0010797	1.4876	0.00077399	520.3015960534646	70.208	0.55818	70.942	70.693	71.251	0.73421					27	10	4	0	0	0	0.73502	2	26622	26622;26655		4.1166	3.7874	1	3836300	+		32150	16622	23304	23472	31360;31361	31360					0.12537839990409338
LLWTRKKEWWL	11	Unmodified	_LLWTRKKEWWL_					0	0	0			REV__nc|ENSG00000073712|Q96AC1-2|FERMT2	REV__nc|ENSG00000073712|Q96AC1-2|FERMT2	MULTI-SECPEP	A375_MHC_IP_R2	2	520.1764526367188	3	520.301278	1557.882	-0.58759	-0.00030573	2.0752	0.0010797	1.4876	0.00077399	520.3015960534646	70.208	0.55818	70.942	70.693	71.251	0.73421					27	10	4	0	0	0	1.0004	1	26654	26654		1.2148	0.70888	1	3836300	+		32151	16622	23304	23472	31362	31362					0.12537839990409338
LLWVKSYL	8	Unmodified	_LLWVKSYL_					0	0	0		ENST00000246868.6_1_7:66452970-66453129:-|nuORF	ENST00000246868.6_1_7:66452970-66453129:-|nuORF	ENST00000246868.6_1_7:66452970-66453129:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	510.6753234863281	2	511.307678	1020.6008	-0.42529	-0.00021745	-2.5464	-0.001302	-2.9717	-0.0015195	511.808121987656	100.86	0.55673	100.86	100.58	101.14	0					16	10	3	0	0	0	0.93416	1	37133	37133		0.6015	0	1	674280			32152	10190	23305	23473	31363	31363					0.09132709350694768
LLWVLWSL	8	Unmodified	_LLWVLWSL_					0	0	0			REV__ENSG00000158859|ENST00000367996|ADAMTS4	REV__ENSG00000158859|ENST00000367996|ADAMTS4	MSMS	A375_MHC_IP_R1	1	515.2086181640625	2	515.310221	1028.60589	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.589	1	91.589	91.089	92.089	0								0	0	0	0.16876	1	33651	33651		22.453	1.999	1		+		32153	20092	23306	23474	31364	31364					0.0927301321332834
LLWVWFLRPPT	11	Unmodified	_LLWVWFLRPPT_					0	0	0			REV__ENSG00000108679|ENST00000262776|LGALS3BP	REV__ENSG00000108679|ENST00000262776|LGALS3BP	MSMS	A375_MHC_IP_R1	1	714.1541137695312	2	714.41354	1426.81253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.49	1	134.49	133.99	134.99	0								0	0	0	0.16265	1	51863	51863		4.897	0	1		+		32154	17549	23307	23475	31365	31365					0.11619381041623456
LLYATNNL	8	Unmodified	_LLYATNNL_					0	0	0			REV__nc|ENSG00000176927|A4FU69-5|EFCAB5	REV__nc|ENSG00000176927|A4FU69-5|EFCAB5	MULTI-MSMS	A375_MHC_IP_R2	2	461.6556091308594	2	461.255643	920.496732	-0.49232	-0.00022709	0.67221	0.00031006	0.17989	8.2975E-05	461.25595341673625	62.716	0.50459	63.459	63.18	63.685	0.74263					12	9	2	0	0	0	0.77562	1	23811	23811		10.824	0	1	1735600	+		32155	21429	23308	23476	31366	31366					0.0333038252319966
LLYCRQVEKYL	11	Unmodified	_LLYCRQVEKYL_					0	0	0			REV__ENSG00000106560|ENST00000223293|GIMAP2	REV__ENSG00000106560|ENST00000223293|GIMAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	714.7890625	2	714.389405	1426.76426	-0.18714	-0.00013369	-1.1449	-0.00081794	-1.3321	-0.00095162	714.8904355108428	126.72	0.50591	126.72	126.41	126.91	0					22	9	4	0	0	0	0.99109	1	48447	48447		10.074	2.9722	1	54874000	+		32156	17456	23309	23477	31367	31367					0.06794519339450744
LLYCWEMFWIV	11	Unmodified	_LLYCWEMFWIV_					0	0	0		ENST00000578529.5_1_18:259269-260310:-|nuORF;ENST00000581116.1_1_18:259269-264031:-|nuORF	ENST00000578529.5_1_18:259269-260310:-|nuORF	ENST00000578529.5_1_18:259269-260310:-|nuORF	MSMS	A375_MHC_IP_R1	1	501.6611328125	3	501.578543	1501.7138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.166	1	76.166	75.666	76.666	0								0	0	0	0.16332	1	27760	27760		1.4551	0.12547	1				32157	13655	23310	23478	31368	31368					-0.01698726309950871
LLYDLADQLHA	11	Unmodified	_LLYDLADQLHA_					0	0	0		ENST00000559758.5_1_15:76566725-76584849:-|nuORF;nc|ENSG00000140374|P13804-2|ETFA;ENST00000559075.5_1_15:76523658-76603729:-|nuORF;ENSG00000140374|ENST00000557943|ETFA	ENST00000559758.5_1_15:76566725-76584849:-|nuORF	ENST00000559758.5_1_15:76566725-76584849:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	636.735107421875	2	636.335153	1270.65575	-0.6234	-0.00039669	0.086277	5.4901E-05	-0.53713	-0.00034179	636.3349407994865	101.72	0.50455	101.72	101.45	101.95	0					15	9	2	0	0	0	0.30938	1	37386	37386		46.022	28.58	1	1715200			32158	5147	23311	23479	31369	31369					0.031250513606664754
LLYEAEAL	8	Unmodified	_LLYEAEAL_					0	0	0		ENST00000575531.5_1_16:4407102-4412712:-|nuORF;ENST00000575714.5_1_16:4408319-4455566:-|nuORF;nc|ENSG00000262246|P57737-2|CORO7;nc|ENSG00000262246|P57737-4|CORO7;ENSG00000262246|ENST00000251166|CORO7;nc|ENSG00000262246|P57737-3|CORO7;ENST00000572125.1_1_16:4409158-4409606:-|nuORF	ENST00000575531.5_1_16:4407102-4412712:-|nuORF	ENST00000575531.5_1_16:4407102-4412712:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	461.6556091308594	2	461.250026	920.485499	-0.42322	-0.00019521	-0.14179	-6.5399E-05	-0.56501	-0.00026061	461.24934505092375	63.05	0.65755	63.792	63.484	64.142	0.74263					24	12	3	0	0	0	0.94479	1	23811	23811		13.508	0	1	2244400			32159	9944	23312	23480	31370	31370					0.022075604290307638
LLYEKGISL	9	Unmodified	_LLYEKGISL_					0	0	0		ENST00000528098.5_1_11:57182763-57193651:-|nuORF;ENSG00000134802|ENST00000395124|SLC43A3;nc|ENSG00000134802|Q8NBI5-2|SLC43A3	ENST00000528098.5_1_11:57182763-57193651:-|nuORF	ENST00000528098.5_1_11:57182763-57193651:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	518.707763671875	2	518.307875	1034.6012	-0.43695	-0.00022647	-0.02333	-1.2092E-05	-0.46028	-0.00023857	518.307835957501	78.038	0.71302	78.038	77.69	78.403	0					23	13	3	0	0	0	0.084766	1	28469	28469		53.404	1.1357	1	3111900			32160	4610	23313	23481	31371	31371					0.08528084279919312
LLYEKGISL	9	Unmodified	_LLYEKGISL_					0	0	0		ENST00000528098.5_1_11:57182763-57193651:-|nuORF;ENSG00000134802|ENST00000395124|SLC43A3;nc|ENSG00000134802|Q8NBI5-2|SLC43A3	ENST00000528098.5_1_11:57182763-57193651:-|nuORF	ENST00000528098.5_1_11:57182763-57193651:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	518.7072143554688	2	518.307875	1034.6012	-0.71716	-0.00037171	0.0038959	2.0193E-06	-0.71326	-0.00036969	518.3079801144524	77.14	0.96409	77.883	77.504	78.468	0.74293					23	18	2	0	0	0	0.14858	1	29294	29294		41.956	3.78	1	3165800			32161	4610	23313	23481	31372	31372					0.08528084279919312
LLYESPERY	9	Unmodified	_LLYESPERY_					0	0	0		ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1	ENSG00000168394|ENST00000354258|TAP1	ENSG00000168394|ENST00000354258|TAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	585.6952514648438	2	585.295496	1168.57644	-0.085769	-5.02E-05	0.31624	0.00018509	0.23047	0.00013489	585.2956527214899	51.71	0.66051	51.71	51.322	51.982	0					27	12	3	0	0	0	0.56537	1	18342	18342		29.082	15.176	1	8569400			32162	7295	23314	23482	31373	31373					-0.001105955934690428
LLYESPERY	9	Unmodified	_LLYESPERY_					0	0	0		ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1	ENSG00000168394|ENST00000354258|TAP1	ENSG00000168394|ENST00000354258|TAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	585.6951293945312	2	585.295496	1168.57644	-0.61382	-0.00035927	0.19218	0.00011248	-0.42164	-0.00024679	585.2955171319988	51.068	0.65685	51.822	51.564	52.221	0.75406					28	12	3	0	0	0	0.070665	1	19192	19192		69.105	29.155	1	7270500			32163	7295	23314	23482	31374	31374					-0.001105955934690428
LLYFLCTV	8	Unmodified	_LLYFLCTV_					0	0	0			REV__tr|U7STD4|U7STD4_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01018PE=3SV=1	REV__tr|U7STD4|U7STD4_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01018PE=3SV=1	MSMS	A375_MHC_IP_R1	1	486.181640625	2	486.267164	970.519776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.694	1	66.694	66.194	67.194	0								0	0	0	0.16876	1	24159	24159		20.871	0	1		+		32164	28477	23315	23483	31375	31375					0.033336853163064006
LLYGFLIKA	9	Unmodified	_LLYGFLIKA_					0	0	0		nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN;ENST00000491390.1_1_1:160325502-160326610:+|nuORF	nc|ENSG00000162736|Q92542-2|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	MULTI-SECPEP	A375_MHC_IP_R1	1	519.7232055664062	2	519.323328	1036.6321	-0.29133	-0.00015129	-0.38447	-0.00019966	-0.6758	-0.00035096	519.3230426320116	111.83	0.50858	111.83	111.57	112.08	0					15	9	2	0	0	0	0.28475	1	40997	40997		39.957	19.504	1	2072800			32165	6585	23316	23484	31376	31376					0.11525282384786806
LLYGFLIKA	9	Unmodified	_LLYGFLIKA_					0	0	0		nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN;ENST00000491390.1_1_1:160325502-160326610:+|nuORF	nc|ENSG00000162736|Q92542-2|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	MULTI-MATCH	A375_MHC_IP_R2	2		2	519.323328	1036.6321	-0.50855	-0.0002641	-0.5587	-0.00029014	-1.0672	-0.00055424	519.8245458812853	110.78	0.4558	111.52	111.24	111.7	0.73692	-0.1537	-7.3155E-05	NaN	39.957	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1932200			32166	6585	23316	23484							0.11525282384786806
LLYGGDLHSA	10	Unmodified	_LLYGGDLHSA_					0	0	0		ENST00000504778.5_1_5:54579003-54603452:-|nuORF;ENSG00000067248|ENST00000251636|DHX29	ENST00000504778.5_1_5:54579003-54603452:-|nuORF	ENST00000504778.5_1_5:54579003-54603452:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	523.6688232421875	2	523.269281	1044.52401	-0.7318	-0.00038293	-0.018117	-9.4802E-06	-0.74992	-0.00039241	523.2692718630716	50.329	0.55722	51.083	50.753	51.311	0.75406					20	10	2	0	0	0	0.12314	1	18902	18902		58.679	14.821	1	6630700			32167	1435	23317	23485	31377	31377					0.0035286606357658457
LLYGHTVTV	9	Unmodified	_LLYGHTVTV_					0	0	0		nc|ENSG00000157593|Q8TB61-5|SLC35B2;nc|ENSG00000157593|Q8TB61-4|SLC35B2;nc|ENSG00000157593|Q8TB61-3|SLC35B2;nc|ENSG00000157593|Q8TB61-2|SLC35B2;ENSG00000157593|ENST00000393812|SLC35B2	nc|ENSG00000157593|Q8TB61-5|SLC35B2	nc|ENSG00000157593|Q8TB61-5|SLC35B2	MULTI-SECPEP	A375_MHC_IP_R1	1	502.1303405761719	2	501.784567	1001.55458	-0.38909	-0.00019524	0.040866	2.0506E-05	-0.34823	-0.00017474	501.7846348603026	57.763	1.0144	57.763	57.467	58.481	0					28	19	3	0	0	0	0.023756	1	20779	20779		92.822	22.107	1	5496700			32168	6253	23318	23486	31378	31378					0.05386644448617517
LLYGHTVTV	9	Unmodified	_LLYGHTVTV_					0	0	0		nc|ENSG00000157593|Q8TB61-5|SLC35B2;nc|ENSG00000157593|Q8TB61-4|SLC35B2;nc|ENSG00000157593|Q8TB61-3|SLC35B2;nc|ENSG00000157593|Q8TB61-2|SLC35B2;ENSG00000157593|ENST00000393812|SLC35B2	nc|ENSG00000157593|Q8TB61-5|SLC35B2	nc|ENSG00000157593|Q8TB61-5|SLC35B2	MULTI-SECPEP	A375_MHC_IP_R2	2	501.1924133300781	2	501.784567	1001.55458	-1.0503	-0.00052705	-0.21781	-0.00010929	-1.2682	-0.00063634	501.7845763092069	56.85	0.51024	57.6	57.356	57.867	0.75015					17	9	2	0	0	0	0.05755	1	21467	21467		61.357	6.5839	1	4214500			32169	6253	23318	23486	31379	31379					0.05386644448617517
LLYGKEDY	8	Unmodified	_LLYGKEDY_					0	0	0			REV__nc|ENSG00000158104|P32754-2|HPD	REV__nc|ENSG00000158104|P32754-2|HPD	MULTI-MSMS	A375_MHC_IP_R2	2	501.1528625488281	2	500.752933	999.491313	-0.51763	-0.0002592	0.0026087	1.3063E-06	-0.51502	-0.0002579	500.75291054542464	64.066	1.475	64.807	64.394	65.869	0.74022					54	28	3	0	0	0	0.7338	1	24283	24283		24.674	0	1	3190500	+		32170	20061	23319	23487	31380	31380					-0.008453410592892396
LLYGKYVSV	9	Unmodified	_LLYGKYVSV_					0	0	0		ENSG00000186501|ENST00000374076|TMEM222;nc|ENSG00000186501|Q9H0R3-2|TMEM222;ENST00000464720.5_1_1:27657613-27661954:+|nuORF;ENST00000471456.1_1_1:27660299-27661954:+|nuORF	ENSG00000186501|ENST00000374076|TMEM222	ENSG00000186501|ENST00000374076|TMEM222	MULTI-SECPEP	A375_MHC_IP_R1	1	521.7025146484375	2	521.302593	1040.59063	-0.11761	-6.1309E-05	-0.20225	-0.00010543	-0.31986	-0.00016674	521.3023317013818	69.857	0.45415	69.857	69.631	70.085	0					18	8	3	0	0	0	0.4465	1	25353	25353		31.268	9.5217	1	3449200			32171	8754	23320	23488	31381	31381					0.07196101625481788
LLYGKYVSV	9	Unmodified	_LLYGKYVSV_					0	0	0		ENSG00000186501|ENST00000374076|TMEM222;nc|ENSG00000186501|Q9H0R3-2|TMEM222;ENST00000464720.5_1_1:27657613-27661954:+|nuORF;ENST00000471456.1_1_1:27660299-27661954:+|nuORF	ENSG00000186501|ENST00000374076|TMEM222	ENSG00000186501|ENST00000374076|TMEM222	MULTI-MSMS	A375_MHC_IP_R2	2	521.7020263671875	2	521.302593	1040.59063	-0.51032	-0.00026603	-0.65576	-0.00034185	-1.1661	-0.00060788	521.8038310039133	69.063	0.40718	69.798	69.575	69.982	0.73511					17	7	3	0	0	0	0.14858	1	26168	26168		41.956	7.8531	1	2799100			32172	8754	23320	23488	31382	31382					0.07196101625481788
LLYHCSYI	8	Unmodified	_LLYHCSYI_					0	0	0			REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	MULTI-MSMS	A375_MHC_IP_R2	2	506.194091796875	2	506.252046	1010.48954	-0.69901	-0.00035388	0.79817	0.00040407	0.099157	5.0198E-05	506.2523695494083	62.947	0.50406	63.69	63.383	63.888	0.74263					15	9	2	0	0	0	0.77123	1	23903	23903		14.582	0	1	1747800	+		32173	19582	23321	23489	31383	31383					-0.015286733488778737
LLYHTLLY	8	Unmodified	_LLYHTLLY_					0	0	0			REV__ENSG00000172992|ENST00000651974|DCAKD	REV__ENSG00000172992|ENST00000651974|DCAKD	MULTI-SECPEP	A375_MHC_IP_R1	1	518.6951904296875	2	518.29731	1034.58007	-0.80493	-0.00041719	-2.2161	-0.0011486	-3.021	-0.0015658	518.2956041490569	67.11	0.87016	67.11	66.529	67.399	0					27	16	3	0	0	0	0.73517	1	24304	24304		34.187	2.0704	1	3399800	+		32174	21188	23322	23490	31384	31384					0.06416118971060314
LLYINARELRI	11	Unmodified	_LLYINARELRI_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MULTI-MSMS	A375_MHC_IP_R1	1	687.815673828125	2	687.416811	1372.81907	-0.97758	-0.00067201	-0.27374	-0.00018817	-1.2513	-0.00086018	687.4159655908802	149.79	1.2463	149.79	148.76	150	0					123	47	3	0	0	0	0.73902	1	57122	57122		0.30703	0	1	168320			32175	2396	23323	23491	31385	31385					0.14757274202338522
LLYINARELRI	11	Unmodified	_LLYINARELRI_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	687.416811	1372.81907	-0.47526	-0.0003267	-0.89232	-0.00061339	-1.3676	-0.00094009	687.4156802354704	149.82	0.90335	149.83	149.11	150.01	0.01825	0.020195	-0.00042519	NaN	0.30703	127	45	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136470			32176	2396	23323	23491							0.14757274202338522
LLYIRESI	8	Unmodified	_LLYIRESI_					0	0	0		ENST00000416749.1_3_6:27326520-27327366:-|nuORF	ENST00000416749.1_3_6:27326520-27327366:-|nuORF	ENST00000416749.1_3_6:27326520-27327366:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	503.70574951171875	2	503.800217	1005.58588	-0.5935	-0.00029901	-3.2175	-0.001621	-3.811	-0.00192	503.7995782703456	87.988	0.25519	88.72	88.519	88.774	0.7318					5	3	2	0	0	0	0.97144	1	33403	33403		14.582	0	1	599550			32177	11696	23324	23492	31386	31386					0.08331217482702868
LLYLVERLT	9	Unmodified	_LLYLVERLT_					0	0	0			REV__TTC26|p.H526Y|1|0.34|ENSG00000105948|chr7:139189343-139189343|C/T|missense_variant	REV__TTC26|p.H526Y|1|0.34|ENSG00000105948|chr7:139189343-139189343|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	373.957275390625	3	373.897258	1118.66995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.589	1	30.589	30.089	31.089	0								0	0	0	0.15486	1	9735	9735		6.6304	0	1		+		32178	28923	23325	23493	31387	31387					0.11535748579603933
LLYQDRLL	8	Unmodified	_LLYQDRLL_					0	0	0			REV__nc|ENSG00000134444|Q9P260|RELCH	REV__nc|ENSG00000134444|Q9P260|RELCH	MULTI-SECPEP	A375_MHC_IP_R2	2	517.05712890625	2	517.305667	1032.59678	-0.49665	-0.00025692	-0.32779	-0.00016957	-0.82443	-0.00042648	517.3052542922118	99.719	0.86395	100.48	99.964	100.83	0.76278					21	16	2	0	0	0	0.91495	1	37948	37948		12.532	0	1	1173000	+		32179	18780	23326	23494	31388	31388					0.08178619856994374
LLYQGPHNTL	10	Unmodified	_LLYQGPHNTL_					0	0	0		ENST00000484404.1_1_2:182322441-182339919:+|nuORF;nc|ENSG00000115232|P13612-2|ITGA4;ENST00000476089.1_1_2:182321937-182323202:+|nuORF;ENST00000465522.5_1_2:182322141-182350724:+|nuORF;ENSG00000115232|ENST00000397033|ITGA4	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	578.7111206054688	2	578.31148	1154.60841	-0.018695	-1.0812E-05	-0.31462	-0.00018195	-0.33332	-0.00019276	578.3113292261	54.338	0.45369	54.338	54.063	54.516	0					19	8	3	0	0	0	0.51228	1	19364	19364		49.554	17.249	1	3379600			32180	3284	23327	23495	31389	31389					0.03728816880334307
LLYQGPHNTL	10	Unmodified	_LLYQGPHNTL_					0	0	0		ENST00000484404.1_1_2:182322441-182339919:+|nuORF;nc|ENSG00000115232|P13612-2|ITGA4;ENST00000476089.1_1_2:182321937-182323202:+|nuORF;ENST00000465522.5_1_2:182322141-182350724:+|nuORF;ENSG00000115232|ENST00000397033|ITGA4	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	578.7108764648438	2	578.31148	1154.60841	-0.76414	-0.00044191	0.2674	0.00015464	-0.49673	-0.00028727	578.3116322543661	53.472	0.45979	54.223	53.995	54.454	0.75105					18	8	3	0	0	0	0.30731	1	20191	20191		40.239	18.493	1	5108800			32181	3284	23327	23495	31390	31390					0.03728816880334307
LLYQPVQW	8	Unmodified	_LLYQPVQW_					0	0	0			REV__nc|ENSG00000139370|Q8N697-2|SLC15A4	REV__nc|ENSG00000139370|Q8N697-2|SLC15A4	MULTI-SECPEP	A375_MHC_IP_R1	1	523.6796264648438	2	523.78711	1045.55967	-0.046712	-2.4467E-05	2.54	0.0013304	2.4933	0.0013059	524.2896695489367	69.757	0.1515	69.757	69.631	69.782	0					4	2	2	0	0	0	0.94479	1	25299	25299		8.5933	0	1	390380	+		32182	19155	23328	23496	31391	31391					0.038709483112370435
LLYRRKHVEKI	11	Unmodified	_LLYRRKHVEKI_					0	0	0			REV__ENSG00000163625|ENST00000295888|WDFY3	REV__ENSG00000163625|ENST00000295888|WDFY3	MULTI-MSMS	A375_MHC_IP_R1	1	728.3495483398438	2	727.951353	1453.88815	-0.65631	-0.00047776	-0.82616	-0.0006014	-1.4825	-0.0010792	727.9507570583052	87.16	0.50797	87.16	86.933	87.441	0					15	9	2	0	0	0	0.7359	1	31971	31971		3.2813	0	1	4587000	+		32183	20386	23329	23497	31392	31392					0.1793635822189117
LLYRWIMVFIC	11	Unmodified	_LLYRWIMVFIC_					0	0	0			REV__ENST00000436104.6_1_16:67862410-67864187:-|nuORF	REV__ENST00000436104.6_1_16:67862410-67864187:-|nuORF	MSMS	A375_MHC_IP_R1	1	728.8512573242188	2	728.895811	1455.77707	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.174	1	87.174	86.674	87.674	0								0	0	0	0.1623	1	31982	31982		6.7232	2.7788	1		+		32184	24760	23330	23498	31393	31393					0.06741259197974614
LLYSDQPDGW	10	Unmodified	_LLYSDQPDGW_					0	0	0			REV__ENST00000478241.6_2_12:56224362-56224512:+|nuORF	REV__ENST00000478241.6_2_12:56224362-56224512:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	398.9211120605469	3	398.520628	1192.54005	-0.25021	-9.9714E-05	1.1679	0.00046542	0.91765	0.0003657	398.5211837982577	28.315	0.50402	28.315	27.987	28.491	0					14	9	2	0	0	0	0.93404	1	8785	8785		0.77653	0	1	2838400	+		32185	25209	23331	23499	31394	31394					-0.04851472490190645
LLYSQHSL	8	Unmodified	_LLYSQHSL_					0	0	0		ENSG00000122376|ENST00000298786|SHLD2;nc|ENSG00000122376|Q86V20|SHLD2	ENSG00000122376|ENST00000298786|SHLD2	ENSG00000122376|ENST00000298786|SHLD2	MULTI-SECPEP	A375_MHC_IP_R2	2	480.11297607421875	2	480.761092	959.507631	-0.47906	-0.00023032	0.61312	0.00029476	0.13405	6.4447E-05	480.76097070138826	91.97	0.65924	92.709	92.278	92.937	0.73902					17	12	2	0	0	0	0.93416	1	34888	34888		14.582	2.0501	1	1484600			32186	3776	23332	23500	31395	31395					0.026257848974637454
LLYSSDAFAK	10	Unmodified	_LLYSSDAFAK_					0	0	0			REV__ENSG00000169957|ENST00000380412|ZNF768	REV__ENSG00000169957|ENST00000380412|ZNF768	MULTI-MSMS	A375_MHC_IP_R1	1	559.7334594726562	2	557.792589	1113.57063	-0.46105	-0.00025717	-0.010528	-5.8725E-06	-0.47158	-0.00026304	557.7926893151889	42.21	0.85832	42.21	41.932	42.79	0					54	16	5	0	0	0	0.70793	1	14694	14694		8.7454	0.83525	1	45513000	+		32187	20957	23333	23501	31396	31396					0.018383058948302278
LLYWINKRRRY	11	Unmodified	_LLYWINKRRRY_					0	0	0		ENSG00000186118|ENST00000334122|TEX38	ENSG00000186118|ENST00000334122|TEX38	ENSG00000186118|ENST00000334122|TEX38	MSMS	A375_MHC_IP_R1	1	527.6497192382812	3	527.643927	1579.90995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.361	1	79.361	78.861	79.861	0								0	0	0	0.16332	1	28968	28968		1.4551	1.3603	1				32188	8721	23334	23502	31397	31397					0.1431916297049156
LLYWRMFRLKR	11	Unmodified	_LLYWRMFRLKR_					0	0	0		ENSG00000144218|ENST00000672756|AFF3;nc|ENSG00000144218|P51826-2|AFF3	ENSG00000144218|ENST00000672756|AFF3	ENSG00000144218|ENST00000672756|AFF3	MSMS	A375_MHC_IP_R1	1	528.0419921875	3	527.978141	1580.91259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.663	1	64.663	64.163	65.163	0								0	0	0	0.1635	1	23401	23401		0.50596	0.41111	1				32189	5470	23335	23503	31398	31398					0.14537295103787073
LLYYFFKASKL	11	Unmodified	_LLYYFFKASKL_					0	0	0		ENST00000312938.4_1_3:101369242-101369323:-|nuORF	ENST00000312938.4_1_3:101369242-101369323:-|nuORF	ENST00000312938.4_1_3:101369242-101369323:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	465.6695251464844	3	464.935713	1391.78531	-0.46144	-0.00021454	-0.27872	-0.00012959	-0.74016	-0.00034413	464.9354385605228	131.5	1.1132	131.5	130.87	131.98	0					41	21	3	0	0	0	0.99881	1	50831	50831		0.50596	0	1	8445200			32190	10638	23336	23504	31399	31399					0.10508852710609062
LMAIDKQKQ	9	Unmodified	_LMAIDKQKQ_					0	0	0			REV__nc|ENSG00000129646|Q9H0J4-3|QRICH2	REV__nc|ENSG00000129646|Q9H0J4-3|QRICH2	MULTI-SECPEP	A375_MHC_IP_R2	2	537.666015625	2	537.802434	1073.59032	-1.1488	-0.00061783	1.2874	0.00069239	0.13865	7.4565E-05	537.802657524044	23.627	0.20382	24.257	24.129	24.333	0.63014					5	3	2	0	0	0	0.73363	1	7609	7609		10.824	0	1	1215700	+		32191	18501	23337	23505	31400	31400					0.056463586339759786
LMAPNACTPV	10	Unmodified	_LMAPNACTPV_					0	0	0			REV__nc|ENSG00000114026|O15527-3|OGG1	REV__nc|ENSG00000114026|O15527-3|OGG1	MULTI-MSMS	A375_MHC_IP_R2	2	508.6819152832031	2	508.748813	1015.48307	-0.69733	-0.00035476	-3.8525	-0.0019599	-4.5498	-0.0023147	508.74692630638606	73.331	0.30627	74.067	73.785	74.091	0.73541					8	5	2	0	0	0	0.69947	1	27740	27740		12.532	0.89125	1	603270	+		32192	27181	23338	23506	31401	31401					-0.02404934571927697
LMDHTIPEV	9	Unmodified	_LMDHTIPEV_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-SECPEP	A375_MHC_IP_R1	1	528.1654663085938	2	527.765517	1053.51648	-0.58693	-0.00030976	1.0897	0.00057511	0.50277	0.00026534	527.7662618421318	64.913	1.1711	64.913	64.343	65.514	0					25	15	3	0	0	0	0.1277	1	23485	23485		64.236	30.134	1	3504000			32193	4898	23339	23507	31402	31402					-0.008136095283589384
LMDHTIPEV	9	Unmodified	_LMDHTIPEV_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-SECPEP	A375_MHC_IP_R2	2	528.1650390625	2	527.765517	1053.51648	-0.42245	-0.00022295	-0.17258	-9.108E-05	-0.59502	-0.00031403	527.7654793620992	64.137	0.55946	64.877	64.597	65.157	0.74022					23	10	3	0	0	0	0.1277	1	24324	24324		64.236	30.134	1	3158100			32194	4898	23339	23507	31403	31403					-0.008136095283589384
LMDHTIPEV	9	Oxidation (M)	_LM(Oxidation (M))DHTIPEV_		LM(1)DHTIPEV		LM(64)DHTIPEV	0	0	1		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-SECPEP	A375_MHC_IP_R2	2	536.16259765625	2	535.762975	1069.5114	-0.83994	-0.00045001	0.013242	7.0945E-06	-0.82669	-0.00044291	535.7630976713444	48.458	0.60712	49.215	48.929	49.536	0.75737					23	11	3	0	0	0	0.1277	1	18180	18180		64.236	17.315	1	6514100			32195	4898	23339	23508	31404	31404		261			-0.020579133909905067
LMDPMEDLDD	10	Unmodified	_LMDPMEDLDD_					0	0	0		KIF19|p.P51L|1|0.18|ENSG00000196169|chr17:74341907-74341907|C/T|missense_variant	KIF19|p.P51L|1|0.18|ENSG00000196169|chr17:74341907-74341907|C/T|missense_variant	KIF19|p.P51L|1|0.18|ENSG00000196169|chr17:74341907-74341907|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	597.2515869140625	2	597.238672	1192.46279	-0.4771	-0.00028494	0.44575	0.00026622	-0.03135	-1.8724E-05	597.2389364187056	92.214	0.7562	92.953	92.534	93.291	0.73902					29	14	3	0	0	0	0.70496	2	35119	35039;35119		10.074	3.3508	1	5471300			32196	14213	23340	23509	31405;31406	31406					-0.1257419481303259
LMEEVQTLY	9	Unmodified	_LMEEVQTLY_					0	0	0		ENSG00000116679|ENST00000367498|IVNS1ABP	ENSG00000116679|ENST00000367498|IVNS1ABP	ENSG00000116679|ENST00000367498|IVNS1ABP	MULTI-MSMS	A375_MHC_IP_R1	1	563.6771850585938	2	563.278457	1124.54236	-0.27189	-0.00015315	-1.0279	-0.00057899	-1.2998	-0.00073214	563.2769299615728	93.195	0.96758	93.195	92.566	93.533	0					30	18	4	0	0	0	0.13797	1	34289	34289		43.858	7.7313	1	2191000			32197	3416	23341	23510	31407	31407					-0.014927600767123295
LMEEVQTLY	9	Unmodified	_LMEEVQTLY_					0	0	0		ENSG00000116679|ENST00000367498|IVNS1ABP	ENSG00000116679|ENST00000367498|IVNS1ABP	ENSG00000116679|ENST00000367498|IVNS1ABP	MULTI-MSMS	A375_MHC_IP_R2	2	563.6768798828125	2	563.278457	1124.54236	-0.45383	-0.00025563	-1.429	-0.00080495	-1.8829	-0.0010606	563.2775039925563	92.746	0.91026	93.485	92.937	93.847	0.73901					26	17	2	0	0	0	0.11629	1	35234	35234		47.749	17.524	1	1856500			32198	3416	23341	23510	31408	31408					-0.014927600767123295
LMEHIHKL	8	Unmodified	_LMEHIHKL_					0	0	0		ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	511.18634033203125	2	510.786587	1019.55862	-0.57181	-0.00029207	0.20462	0.00010452	-0.36719	-0.00018756	510.78656830957016	39.54	0.40396	39.54	39.34	39.744	0					12	7	2	0	0	0	0.23546	1	13534	13534		65.235	19.214	1	4802300			32199	11882	23342	23511	31409	31409					0.0496241067066876
LMEYGALDTW	10	Unmodified	_LMEYGALDTW_					0	0	0		ENST00000311330.3_1_11:66082088-66082220:-|nuORF	ENST00000311330.3_1_11:66082088-66082220:-|nuORF	ENST00000311330.3_1_11:66082088-66082220:-|nuORF	MSMS	A375_MHC_IP_R2	2	599.7294311523438	2	599.776082	1197.53761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.589	1	71.323	70.823	71.823	0.73421								0	0	0	0.14983	1	26758	26758		18.146	0	1				32200	10628	23343	23512	31410	31410					-0.0532564421951065
LMGAEPYLDL	10	Unmodified	_LMGAEPYLDL_					0	0	0			REV__chr12:131849070-131849939|286|13.81|0.52|4.73|+|1|TE_info:L1MB3,L1MB3_dup12230,L1,LINE,donor,-,131848428,131849070|None,MMP17|6	REV__chr12:131849070-131849939|286|13.81|0.52|4.73|+|1|TE_info:L1MB3,L1MB3_dup12230,L1,LINE,donor,-,131848428,131849070|None,MMP17|6	MSMS	A375_MHC_IP_R2	2	561.1972045898438	2	561.281	1120.54745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.51	1	128.75	128.25	129.25	0.23946								0	0	0	0.15105	1	50469	50469		15.847	0	1		+		32201	15686	23344	23513	31411	31411					-0.008004562141422866
LMHKRQQRMRR	11	Unmodified	_LMHKRQQRMRR_					0	0	0			REV__ENSG00000076201|ENST00000265562|PTPN23	REV__ENSG00000076201|ENST00000265562|PTPN23	MULTI-SECPEP	A375_MHC_IP_R2	2	513.6284790039062	3	513.957634	1538.85107	-0.91603	-0.0004708	-1.0722	-0.00055106	-1.9882	-0.0010219	514.2915373779409	41.477	0.50714	42.252	41.946	42.453	0.77451					20	9	3	0	0	0	1.0002	1	15415	15415		1.3296	0	1	1455200	+		32202	16670	23345	23514	31412	31412					0.10320040132842223
LMHLIGNQTYL	11	Unmodified	_LMHLIGNQTYL_					0	0	0			REV__ENST00000378725.3_1_1:1480120-1509937:-|nuORF	REV__ENST00000378725.3_1_1:1480120-1509937:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	435.2669677734375	3	434.900674	1301.68019	0.010798	4.6961E-06	-2.4065	-0.0010466	-2.3957	-0.0010419	435.2338486365837	43.257	0.35805	43.257	42.993	43.351	0					9	6	2	0	0	0	0.731	1	15011	15011		7.9454	2.5427	1	824240	+		32203	20144	23346	23515	31413	31413					0.041419882425316246
LMHWALLHQPR	11	Unmodified	_LMHWALLHQPR_					0	0	0		ENST00000596217.1_2_19:50430994-50431141:-|nuORF	ENST00000596217.1_2_19:50430994-50431141:-|nuORF	ENST00000596217.1_2_19:50430994-50431141:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	701.7802734375	2	701.382249	1400.74994	-0.48879	-0.00034283	-3.2005	-0.0022447	-3.6892	-0.0025876	701.3801476686067	128.35	0.1528	128.35	128.28	128.43	0					4	2	2	0	0	0	0.73332	1	49318	49318		5.7319	1.203	1	10199000			32204	13839	23347	23516	31414	31414					0.06559911701810961
LMHWALLHQPR	11	Unmodified	_LMHWALLHQPR_					0	0	0		ENST00000596217.1_2_19:50430994-50431141:-|nuORF	ENST00000596217.1_2_19:50430994-50431141:-|nuORF	ENST00000596217.1_2_19:50430994-50431141:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	701.382249	1400.74994	-0.77919	-0.00054651	-6.6517	-0.0046654	-7.4309	-0.0052119	701.3790433672135	128.12	0.30522	128.37	128.2	128.51	0.2473	0.0052245	-0.002366	NaN	5.7319	8	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4031900			32205	13839	23347	23516							0.06559911701810961
LMIMLKHPRLF	11	Unmodified	_LMIMLKHPRLF_					0	0	0			REV__nc|ENSG00000167080|Q8NHY0|B4GALNT2	REV__nc|ENSG00000167080|Q8NHY0|B4GALNT2	MSMS	A375_MHC_IP_R1	1	699.8141479492188	2	699.909253	1397.80395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.75	1	144.75	144.25	145.25	0								0	0	0	0.16334	1	55503	55503		1.3295	0.13619	1		+		32206	20729	23348	23517	31415	31415					0.12096367809158437
LMKITKKKKR	10	Unmodified	_LMKITKKKKR_					0	0	0			REV__nc|ENSG00000123901|Q9NYM4-2|GPR83	REV__nc|ENSG00000123901|Q9NYM4-2|GPR83	MSMS	A375_MHC_IP_R2	2	425.283935546875	3	425.288204	1272.84278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.043	1	64.783	64.283	65.283	0.74022								0	0	0	0.15618	1	24284	24284		0.77653	0.078866	1		+		32207	18262	23349	23518	31416	31416					0.2172741643516929
LMKKLAAVIL	10	Unmodified	_LMKKLAAVIL_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-MSMS	A375_MHC_IP_R2	2	367.63623046875	3	367.247234	1098.71987	0.11966	4.3946E-05	1.1792	0.00043305	1.2988	0.00047699	367.2476538988682	30.976	1.2191	31.695	31.417	32.636	0.71857					30	23	2	0	0	0	0.70741	1	10810	10810		8.9762	8.9762	1	1632300	+		32208	22428	23350	23519	31417	31417					0.1744615998388781
LMKKNREVI	9	Unmodified	_LMKKNREVI_					0	0	0		tr|U7SLA3|U7SLA3_FUSNUdihydrofolatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02029PE=3SV=1	tr|U7SLA3|U7SLA3_FUSNUdihydrofolatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02029PE=3SV=1	tr|U7SLA3|U7SLA3_FUSNUdihydrofolatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02029PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	377.953369140625	3	377.561993	1129.66415	-0.16454	-6.2123E-05	-0.52887	-0.00019968	-0.6934	-0.0002618	377.5618602405961	24.488	0.5067	25.131	24.958	25.465	0.64368					22	9	4	0	0	0	0.29123	1	8036	8036		31.268	0.5649	1	13592000			32209	29499	23351	23520	31418	31418					0.1045032679628548
LMKRLIKIY	9	Unmodified	_LMKRLIKIY_					0	0	0			REV__nc|ENSG00000054983|P54803-5|GALC	REV__nc|ENSG00000054983|P54803-5|GALC	MULTI-SECPEP	A375_MHC_IP_R1	1	589.148193359375	2	589.378112	1176.74167	0.06335	3.7337E-05	0.53898	0.00031766	0.60233	0.000355	589.3793841276455	112.82	0.25504	112.82	112.59	112.84	0					5	4	2	0	0	0	0.79683	1	41310	41310		5.2307	0.47466	1	931350	+		32210	16410	23352	23521	31419	31419					0.16036964732484194
LMLKQQITM	9	Unmodified	_LMLKQQITM_					0	0	0		ENSG00000103994|ENST00000564754|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106;nc|ENSG00000103994|Q9H2Y7-2|ZNF106	ENSG00000103994|ENST00000564754|ZNF106	ENSG00000103994|ENST00000564754|ZNF106	MULTI-SECPEP	A375_MHC_IP_R1	1	368.62799072265625	3	369.208451	1104.60352	0.4641	0.00017135	-0.36742	-0.00013566	0.096682	3.5696E-05	369.5428235036361	45.74	0.25365	45.74	45.585	45.839	0					6	4	2	0	0	0	0.75164	1	16042	16042		6.1918	2.0023	1	516320			32211	2477	23353	23522	31420	31420					0.055404734216836005
LMLLCWCQGNN	11	Unmodified	_LMLLCWCQGNN_					0	0	0			REV__ENST00000471477.1_1_9:101706343-101748400:+|nuORF	REV__ENST00000471477.1_1_9:101706343-101748400:+|nuORF	MSMS	A375_MHC_IP_R2	2	647.747802734375	2	647.790686	1293.56682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.858	1	82.601	82.101	83.101	0.74293								0	0	0	0.16297	1	31095	31095		3.2813	0	1		+		32212	22504	23354	23523	31421	31421					-0.06822146466492995
LMLLPFHHL	9	Unmodified	_LMLLPFHHL_					0	0	0		ENST00000369454.3_1_X:154493667-154493862:-|nuORF	ENST00000369454.3_1_X:154493667-154493862:-|nuORF	ENST00000369454.3_1_X:154493667-154493862:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	374.61669921875	3	374.216045	1119.62631	-0.016042	-6.0031E-06	1.3827	0.00051744	1.3667	0.00051143	374.2165434358609	58.919	1.1649	59.666	59.235	60.4	0.74714					33	22	2	0	0	0	0.71416	1	22298	22298		5.7319	5.7319	1	4996300			32213	11130	23355	23524	31422	31422					0.07127860601462999
LMLQQWHS	8	Unmodified	_LMLQQWHS_					0	0	0			REV__nc|ENSG00000038382|O75962-2|TRIO	REV__nc|ENSG00000038382|O75962-2|TRIO	MSMS	A375_MHC_IP_R2	2	521.7000122070312	2	521.760569	1041.50659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.77	1	90.502	90.002	91.002	0.7318								0	0	0	0.16876	1	34159	34159		7.9102	0	1		+		32214	16328	23356	23525	31423	31423					-0.012507527430898335
LMLRLLWAFLR	11	Unmodified	_LMLRLLWAFLR_					0	0	0		BPTF|p.S1790F|1|0.24|ENSG00000171634|chr17:67912875-67912875|C/T|missense_variant	BPTF|p.S1790F|1|0.24|ENSG00000171634|chr17:67912875-67912875|C/T|missense_variant	BPTF|p.S1790F|1|0.24|ENSG00000171634|chr17:67912875-67912875|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	716.4249877929688	2	716.436492	1430.85843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.509	1	100.27	99.772	100.77	0.76278								0	0	0	0.16331	1	37746	37746		1.4819	0	1				32215	246	23357	23526	31424	31424					0.16023702952247731
LMLSVITMWAI	11	Unmodified	_LMLSVITMWAI_					0	0	0		nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13;ENSG00000177054|ENST00000446113|ZDHHC13;ENST00000525490.5_1_11:19138758-19188042:+|nuORF	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	MULTI-MSMS	A375_MHC_IP_R2	2	426.97137451171875	3	426.571389	1276.69234	0.044674	1.9057E-05	0.088196	3.7622E-05	0.13287	5.6679E-05	426.5713940979253	95.241	0.35915	95.991	95.836	96.195	0.75044					12	6	2	0	0	0	0.72877	1	36218	36218		5.0475	2.2042	1	2028500			32216	8060	23358	23527	31425	31425					0.06505888661376957
LMLSVITMWAI	11	Unmodified	_LMLSVITMWAI_					0	0	0		nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13;ENSG00000177054|ENST00000446113|ZDHHC13;ENST00000525490.5_1_11:19138758-19188042:+|nuORF	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	MULTI-MATCH	A375_MHC_IP_R1	1		3	426.571389	1276.69234	-0.13116	-5.5948E-05	1.7635	0.00075227	1.6324	0.00069633	426.9059891946408	96.063	1.1148	96.063	95.312	96.427	0	0.035904	0.0020486	NaN	5.0475	30	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1614900			32217	8060	23358	23527							0.06505888661376957
LMLTMFLSY	9	2 Oxidation (M)	_LM(Oxidation (M))LTM(Oxidation (M))FLSY_		LM(1)LTM(1)FLSY		LM(74)LTM(74)FLSY	0	0	2			REV__tr|U7T2B8|U7T2B8_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00627PE=3SV=1	REV__tr|U7T2B8|U7T2B8_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00627PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	576.1796264648438	2	575.779779	1149.545	-0.01002	-5.7694E-06	0.49635	0.00028579	0.48633	0.00028002	575.7800544251782	43.224	1.6832	43.224	42.891	44.575	0					108	32	5	0	0	0	0.03063	1	14957	14957		74.423	18.246	1	180290000	+		32218	28735	23359	23528	31426	31426		490;491			-0.023786279434261814
LMLTMFLSY	9	2 Oxidation (M)	_LM(Oxidation (M))LTM(Oxidation (M))FLSY_		LM(1)LTM(1)FLSY		LM(67)LTM(67)FLSY	0	0	2			REV__tr|U7T2B8|U7T2B8_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00627PE=3SV=1	REV__tr|U7T2B8|U7T2B8_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00627PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	576.1798095703125	2	575.779779	1149.545	-0.11743	-6.7613E-05	-0.017392	-1.0014E-05	-0.13482	-7.7627E-05	575.7797465163849	42.503	1.8753	43.276	42.91	44.786	0.7724					102	36	5	0	0	0	0.042197	1	15762	15762		67.344	19.595	1	216120000	+		32219	28735	23359	23528	31427	31427		490;491			-0.023786279434261814
LMMVRIKLL	9	Unmodified	_LMMVRIKLL_					0	0	0			REV__ENST00000275364.7_1_7:2770568-2770751:-|nuORF	REV__ENST00000275364.7_1_7:2770568-2770751:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	373.3047180175781	3	372.904702	1115.69228	0.31801	0.00011859	0.43402	0.00016185	0.75203	0.00028043	372.90481777720544	31.895	0.56315	31.895	31.616	32.179	0					27	10	3	0	0	0	0.67539	1	10243	10243		21.537	7.1316	1	10556000	+		32220	23298	23360	23529	31428	31428					0.13905933452042518
LMNAVVQTV	9	Unmodified	_LMNAVVQTV_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF;ENST00000373735.1_1_10:67680090-67838726:-|nuORF;ENSG00000183230|ENST00000433211|CTNNA3	ENSG00000044115|ENST00000302763|CTNNA1;ENSG00000183230|ENST00000433211|CTNNA3	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	A375_MHC_IP_R2	2	488.1705322265625	2	487.770603	973.526652	-0.60904	-0.00029707	0.096961	4.7295E-05	-0.51208	-0.00024978	487.77082993224167	75.381	0.51048	76.122	75.875	76.385	0.74052					13	9	2	0	0	0	0.050162	1	28632	28632		64.236	28.109	1	1652200			32221	1184;8475	23361	23530	31429	31429					0.03882998196877452
LMNAVVQTV	9	Unmodified	_LMNAVVQTV_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF;ENST00000373735.1_1_10:67680090-67838726:-|nuORF;ENSG00000183230|ENST00000433211|CTNNA3	ENSG00000044115|ENST00000302763|CTNNA1;ENSG00000183230|ENST00000433211|CTNNA3	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MATCH	A375_MHC_IP_R1	1		2	487.770603	973.526652	-0.31524	-0.00015377	-0.0067439	-3.2895E-06	-0.32199	-0.00015706	487.770663532758	76.159	0.35337	76.159	75.966	76.319	0	0.018633	-4.3257E-05	NaN	64.236	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1275000			32222	1184;8475	23361	23530							0.03882998196877452
LMNAVVQTV	9	Oxidation (M)	_LM(Oxidation (M))NAVVQTV_		LM(1)NAVVQTV		LM(61)NAVVQTV	0	0	1		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF;ENST00000373735.1_1_10:67680090-67838726:-|nuORF;ENSG00000183230|ENST00000433211|CTNNA3	ENSG00000044115|ENST00000302763|CTNNA1;ENSG00000183230|ENST00000433211|CTNNA3	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-SECPEP	A375_MHC_IP_R2	2	496.1673278808594	2	495.76806	989.521567	-0.87935	-0.00043595	-0.84352	-0.00041819	-1.7229	-0.00085414	495.7676674269389	53.811	0.66684	54.562	54.249	54.916	0.75105					21	12	2	0	0	0	0.14422	1	20380	20380		61.357	13.609	1	1387300			32223	1184;8475	23361	23531	31430	31430		22			0.02638694334268621
LMNENIDIL	9	Unmodified	_LMNENIDIL_					0	0	0		ENSG00000112303|ENST00000326499|VNN2;nc|ENSG00000112303|O95498-5|VNN2;VNN2|p.V93Ffs*54|1|0.24|ENSG00000112303|chr6:132757482-132757483|AC/-|frameshift_variant;nc|ENSG00000112303|O95498-3|VNN2;nc|ENSG00000112303|O95498-4|VNN2;ENST00000526192.1_1_6:133074642-133078971:-|nuORF;nc|ENSG00000112303|O95498-2|VNN2	ENSG00000112303|ENST00000326499|VNN2	ENSG00000112303|ENST00000326499|VNN2	MULTI-MSMS	A375_MHC_IP_R2	2	537.7042846679688	2	537.778625	1073.5427	-0.79381	-0.0004269	-0.54971	-0.00029562	-1.3435	-0.00072252	537.7795360836756	92.883	0.30172	93.622	93.546	93.847	0.73902					6	5	2	0	0	0	0.58047	1	35388	35388		15.847	0	1	601060			32224	3072	23362	23532	31431	31431					0.008866596431289508
LMPLALLLLK	10	Unmodified	_LMPLALLLLK_					0	0	0			REV__ENSG00000131068|ENST00000253381|DEFB118	REV__ENSG00000131068|ENST00000253381|DEFB118	MULTI-SECPEP	A375_MHC_IP_R2	2	1124.056884765625	1	1124.74755	1123.74027	0.20718	0.00023303	-0.88055	-0.0009904	-0.67337	-0.00075737	1124.7489926512967	118.71	0.55733	119.32	119	119.56	0.60909					21	10	3	0	0	0	0.93799	1	45108	45108		0.35063	0.35063	1	28587000	+		32225	18586	23363	23533	31432	31432					0.1833533064373114
LMPTLIWPW	9	Unmodified	_LMPTLIWPW_					0	0	0			REV__ENST00000478558.1_1_1:153631938-153633685:+|nuORF	REV__ENST00000478558.1_1_1:153631938-153633685:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	386.61199951171875	3	386.212301	1155.61507	-0.036233	-1.3994E-05	-3.0948	-0.0011952	-3.131	-0.0012092	386.2110817085217	23.61	0.66121	23.61	23.33	23.991	0					16	12	2	0	0	0	0.64136	1	6553	6553		12.241	0.74595	1	5147300	+		32226	25219	23364	23534	31433	31433					0.043490385073482685
LMQLKVTALT	10	Unmodified	_LMQLKVTALT_					0	0	0		ENSG00000250799|ENST00000653904|PRODH2	ENSG00000250799|ENST00000653904|PRODH2	ENSG00000250799|ENST00000653904|PRODH2	MULTI-MSMS	A375_MHC_IP_R2	2	373.62884521484375	3	373.226499	1116.65767	-0.020705	-7.7275E-06	-0.35845	-0.00013378	-0.37916	-0.00014151	373.2263625883446	25.1	0.81346	25.743	25.364	26.178	0.64368					40	15	4	0	0	0	0.71466	1	8265	8265		5.4027	1.8157	1	113140000			32227	9851	23365	23535	31434	31434					0.10400388844891495
LMRMRFTKI	9	Unmodified	_LMRMRFTKI_					0	0	0			REV__ENSG00000214929|ENST00000344803|SPATA31D1	REV__ENSG00000214929|ENST00000344803|SPATA31D1	MULTI-SECPEP	A375_MHC_IP_R1	1	398.962890625	3	399.23159	1194.67294	-0.1686	-6.7311E-05	-0.24882	-9.9339E-05	-0.41743	-0.00016665	399.23161854814475	23.133	0.30264	23.133	22.924	23.227	0					8	5	2	0	0	0	0.77948	1	6332	6332		6.6304	4.3476	1	2649900	+		32228	22665	23366	23536	31435	31435					0.08338977161133698
LMRQWLPE	8	Unmodified	_LMRQWLPE_					0	0	0			REV__ENST00000398979.7_2_11:61160010-61160744:+|nuORF	REV__ENST00000398979.7_2_11:61160010-61160744:+|nuORF	MSMS	A375_MHC_IP_R1	1	358.2428283691406	3	358.191788	1071.55354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.218	1	17.218	16.718	17.718	0								0	0	0	0.16876	1	4032	4032		0.40072	0	1		+		32229	24385	23367	23537	31436	31436					0.020621068080799887
LMRTSVHFI	9	Unmodified	_LMRTSVHFI_					0	0	0			REV__RALGAPA2|p.P1726L|1|0.32|ENSG00000188559|chr20:20503382-20503382|G/A|missense_variant	REV__RALGAPA2|p.P1726L|1|0.32|ENSG00000188559|chr20:20503382-20503382|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	552.6992797851562	2	552.305144	1102.59573	-0.84415	-0.00046623	-4.3935	-0.0024265	-5.2376	-0.0028928	552.8047490402007	62.587	0.65867	63.33	62.925	63.584	0.74263					38	12	5	0	0	0	0.17338	1	23680	23680		39.95	5.548	1	8770500	+		32230	27865	23368	23538	31437	31437					0.04854082216434108
LMRTSVHFI	9	Unmodified	_LMRTSVHFI_					0	0	0			REV__RALGAPA2|p.P1726L|1|0.32|ENSG00000188559|chr20:20503382-20503382|G/A|missense_variant	REV__RALGAPA2|p.P1726L|1|0.32|ENSG00000188559|chr20:20503382-20503382|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	552.305144	1102.59573	-0.50717	-0.00028011	-4.9691	-0.0027445	-5.4763	-0.0030246	552.804444644235	63.474	0.92085	63.474	63.018	63.939	0	0.071892	-0.00040016	NaN	39.95	42	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7164900	+		32231	27865	23368	23538							0.04854082216434108
LMRTSVHFI	9	Unmodified	_LMRTSVHFI_					0	0	0			REV__RALGAPA2|p.P1726L|1|0.32|ENSG00000188559|chr20:20503382-20503382|G/A|missense_variant	REV__RALGAPA2|p.P1726L|1|0.32|ENSG00000188559|chr20:20503382-20503382|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	552.305144	1102.59573	-0.84415	-0.00046623	-4.3935	-0.0024265	-5.2376	-0.0028928	552.8047490402007	62.587	0.65867	63.33	62.925	63.584	0.74263	-0.071892	0.00023566	NaN	39.95	38	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8770500	+		32232	27865	23368	23538							0.04854082216434108
LMSIFTCIF	9	Unmodified	_LMSIFTCIF_					0	0	0			REV__ENSG00000163930|ENST00000460680|BAP1	REV__ENSG00000163930|ENST00000460680|BAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	537.17041015625	2	537.771757	1073.52896	-0.9228	-0.00049626	2.0501	0.0011025	1.1273	0.00060622	537.7725171152066	65.003	0.30467	65.741	65.613	65.918	0.73812					6	5	2	0	0	0	0.62767	1	24682	24682		16.942	5.4476	1	621460	+		32233	20425	23369	23539	31438	31438					-0.004862893896870446
LMSQDIDVEY	10	Unmodified	_LMSQDIDVEY_					0	0	0			REV__ENSG00000170871|ENST00000307659|KIAA0232	REV__ENSG00000170871|ENST00000307659|KIAA0232	MULTI-SECPEP	A375_MHC_IP_R2	2	607.3985595703125	2	606.776279	1211.538	-0.20387	-0.0001237	-2.5016	-0.0015179	-2.7054	-0.0016416	606.774748637599	111.98	0.45911	112.7	112.46	112.92	0.72458					11	8	2	0	0	0	0.91909	1	42297	42297		9.3831	0	1	1024600	+		32234	21026	23370	23540	31439	31439					-0.05930269290297474
LMTMAFKYQV	10	Unmodified	_LMTMAFKYQV_					0	0	0		ENSG00000116885|ENST00000235532|OSCP1;nc|ENSG00000116885|Q8WVF1|OSCP1;nc|ENSG00000116885|Q8WVF1-4|OSCP1;nc|ENSG00000116885|Q8WVF1-2|OSCP1	ENSG00000116885|ENST00000235532|OSCP1	ENSG00000116885|ENST00000235532|OSCP1	MULTI-MSMS	A375_MHC_IP_R1	1	411.6206970214844	3	411.211972	1230.61409	0.66251	0.00027243	-0.30046	-0.00012355	0.36204	0.00014888	411.2118235807713	44.954	0.80737	44.954	44.676	45.484	0					29	15	4	0	0	0	0.71245	1	15776	15776		3.5871	0.95582	1	6658700			32235	3441	23371	23541	31440	31440					0.008004560761037283
LMTQLFLWEYG	11	Unmodified	_LMTQLFLWEYG_					0	0	0		ENSG00000105223|ENST00000409735|PLD3;ENST00000485448.1_1_19:40872616-40872823:+|nuORF;ENST00000493006.1_1_19:40872390-40872823:+|nuORF	ENSG00000105223|ENST00000409735|PLD3	ENSG00000105223|ENST00000409735|PLD3	MULTI-MSMS	A375_MHC_IP_R2	2	467.9688415527344	3	467.568813	1399.68461	-0.77557	-0.00036263	0.30283	0.00014159	-0.47274	-0.00022104	467.56900118117466	55.844	0.45972	56.594	56.388	56.847	0.75015					13	8	2	0	0	0	0.73283	2	21134	21134;21150		2.8433	0.4085	1	2539900			32236	2578	23372	23542	31441;31442	31441					0.0007545266546458151
LMTSEEDGEL	10	Unmodified	_LMTSEEDGEL_					0	0	0			REV__ENSG00000171914|ENST00000636159|TLN2;REV__ENSG00000137076|ENST00000314888|TLN1	REV__ENSG00000137076|ENST00000314888|TLN1	MULTI-SECPEP	A375_MHC_IP_R2	2	562.0317993164062	2	562.244812	1122.47507	-0.58044	-0.00032635	-0.33949	-0.00019088	-0.91993	-0.00051723	562.7476592283155	98.16	0.35547	98.92	98.742	99.098	0.75977					8	6	2	0	0	0	0.92389	1	37238	37238		3.9444	0	1	902650	+		32237	21108;18984	23373	23543	31443	31443					-0.08126835078337535
LMTVIPAVW	9	Unmodified	_LMTVIPAVW_					0	0	0		AluSz6_dup36815|chr15:60362892-60363058:+|1.3026560341287117|0.0012375329650786|10.04|472.0|6|3|sense	AluSz6_dup36815|chr15:60362892-60363058:+|1.3026560341287117|0.0012375329650786|10.04|472.0|6|3|sense	AluSz6_dup36815|chr15:60362892-60363058:+|1.3026560341287117|0.0012375329650786|10.04|472.0|6|3|sense	MULTI-SECPEP	A375_MHC_IP_R1	1	1030.07763671875	1	1029.58015	1028.57287	0.20123	0.00020718	2.5866	0.0026631	2.7878	0.0028703	1029.5835982823023	104.35	0.45757	104.35	104.18	104.64	0					15	8	3	0	0	0	0.78348	1	38409	38409		7.9102	3.9658	1	1312400			32238	120	23374	23544	31444	31444					0.05973063098963394
LMVADMLEY	9	Unmodified	_LMVADMLEY_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	A375_MHC_IP_R2	2	542.7127685546875	2	542.756304	1083.49805	-0.69569	-0.00037759	0.14517	7.8789E-05	-0.55052	-0.0002988	542.7562193448601	46.491	0.6607	47.256	46.906	47.567	0.76519					14	12	2	0	0	0	0.4867	1	17497	17497		20.454	1.1966	1	1567500			32239	1108	23375	23545	31445	31445					-0.04035487494570589
LMVDHVTEV	9	Unmodified	_LMVDHVTEV_					0	0	0		ENST00000602875.5_1_5:139930287-139937028:-|nuORF;ENSG00000213523|ENST00000336283|SRA1	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	521.72412109375	2	521.765517	1041.51648	-0.42334	-0.00022088	-0.21607	-0.00011274	-0.63941	-0.00033362	521.7654648952976	55.946	0.45655	55.946	55.687	56.143	0					18	8	3	0	0	0	0.034481	1	20009	20009		71.134	32.982	1	4954500			32240	9569	23376	23546	31446	31446					-0.00261609528365625
LMVDHVTEV	9	Oxidation (M)	_LM(Oxidation (M))VDHVTEV_		LM(1)VDHVTEV		LM(130)VDHVTEV	0	0	1		ENST00000602875.5_1_5:139930287-139937028:-|nuORF;ENSG00000213523|ENST00000336283|SRA1	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	529.9623413085938	2	529.762975	1057.5114	-0.083422	-4.4194E-05	-0.78488	-0.0004158	-0.8683	-0.00046	529.7625698612368	45.152	0.75707	45.152	44.727	45.484	0					31	14	3	0	0	0	0.011031	1	15712	15712		133.7	89.844	1	5171600			32241	9569	23376	23547	31447	31447		439			-0.01505913390974456
LMVNKALML	9	Unmodified	_LMVNKALML_					0	0	0			REV__ENSG00000167207|ENST00000647318|NOD2	REV__ENSG00000167207|ENST00000647318|NOD2	MULTI-SECPEP	A375_MHC_IP_R1	1	516.009765625	2	516.800848	1031.58714	-0.35416	-0.00018303	-0.3077	-0.00015902	-0.66186	-0.00034205	516.8006112631584	110.06	0.25359	110.06	109.88	110.14	0					6	4	2	0	0	0	0.73662	1	40347	40347		14.582	0	1	564300	+		32242	20740	23377	23548	31448	31448					0.07261392255577448
LMVQSQDQ	8	Unmodified	_LMVQSQDQ_					0	0	0			REV__nc|ENSG00000278570|Q9Y5X4-2|NR2E3	REV__nc|ENSG00000278570|Q9Y5X4-2|NR2E3	MULTI-SECPEP	A375_MHC_IP_R1	1	947.7799682617188	1	948.445508	947.438231	-0.27767	-0.00026335	1.5488	0.001469	1.2712	0.0012056	948.4462095479915	137.02	0.30876	137.02	136.82	137.13	0					8	5	2	0	0	0	0.972	1	52782	52782		6.3541	0	1	1684100	+		32243	22980	23378	23549	31449	31449					-0.037590421135973884
LMVQSQDQ	8	Unmodified	_LMVQSQDQ_					0	0	0			REV__nc|ENSG00000278570|Q9Y5X4-2|NR2E3	REV__nc|ENSG00000278570|Q9Y5X4-2|NR2E3	MULTI-MATCH	A375_MHC_IP_R2	2		1	948.445508	947.438231	0.0015477	1.4679E-06	0.10332	9.7992E-05	0.10487	9.946E-05	948.445732860431	136.88	0.30939	136.99	136.86	137.17	0.11134	-0.01184	-8.0171E-05	NaN	6.3541	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1822000	+		32244	22980	23378	23549							-0.037590421135973884
LMVVILFIF	9	Unmodified	_LMVVILFIF_					0	0	0			REV__tr|U7T041|U7T041_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00718PE=3SV=1	REV__tr|U7T041|U7T041_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00718PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	364.9533386230469	3	365.56093	1093.66096	-0.21993	-8.0399E-05	-0.43424	-0.00015874	-0.65417	-0.00023914	365.56079568662534	57.884	0.50599	58.633	58.323	58.829	0.74895					16	9	2	0	0	0	0.73662	1	21869	21869		9.3831	0	1	1731200	+		32245	28667	23379	23550	31450	31450					0.1178768368956753
LMVVTQFTW	9	Unmodified	_LMVVTQFTW_					0	0	0			REV__ENST00000475235.1_1_6:32782088-32784728:-|nuORF	REV__ENST00000475235.1_1_6:32782088-32784728:-|nuORF	MSMS	A375_MHC_IP_R2	2	562.711181640625	2	562.794078	1123.5736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.87	1	105.63	105.13	106.13	0.76308								0	0	0	0.15486	1	39671	39671		13.508	0	1		+		32246	22785	23380	23551	31451	31451					0.016758577480231907
LMWLLVLAV	9	Unmodified	_LMWLLVLAV_					0	0	0		ENSG00000172889|ENST00000308874|EGFL7	ENSG00000172889|ENST00000308874|EGFL7	ENSG00000172889|ENST00000308874|EGFL7	MULTI-MSMS	A375_MHC_IP_R2	2	353.2659606933594	3	353.220796	1056.64056	-0.50547	-0.00017854	0.090772	3.2063E-05	-0.41469	-0.00014648	353.2207113752821	24.25	0.30462	24.893	24.705	25.009	0.64368					8	5	2	0	0	0	0.74477	1	7850	7850		2.9952	1.0889	1	4133400			32247	7742	23381	23552	31452	31452					0.11450513029762988
LMWRRKFWKMM	11	Unmodified	_LMWRRKFWKMM_					0	0	0		ENST00000540269.6_1_16:84778391-84778577:+|nuORF	ENST00000540269.6_1_16:84778391-84778577:+|nuORF	ENST00000540269.6_1_16:84778391-84778577:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	807.8268432617188	2	806.924912	1611.83527	0.050552	4.0791E-05	0.26839	0.00021657	0.31894	0.00025736	807.4267588613645	69.737	0.35351	69.737	69.529	69.882	0					15	6	3	0	0	0	0.73902	1	25322	25322		0.30703	0.30703	1	2418800			32248	13268	23382	23553	31453	31453					0.05382617571558512
LMYFIFILV	9	Unmodified	_LMYFIFILV_					0	0	0			REV__OR52B4|p.S219F|3|0.5|ENSG00000221996|chr11:4367640-4367640|G/A|missense_variant	REV__OR52B4|p.S219F|3|0.5|ENSG00000221996|chr11:4367640-4367640|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	580.234619140625	2	579.835214	1157.65588	-0.09852	-5.7125E-05	-1.2848	-0.00074497	-1.3833	-0.0008021	579.8345149095388	72.762	0.60813	72.762	72.372	72.98	0					16	11	2	0	0	0	0.73662	1	26513	26513		9.3474	0	1	1720500	+		32249	27683	23383	23554	31454	31454					0.08335379826962708
LNAEGAKINS	10	Unmodified	_LNAEGAKINS_					0	0	0			REV__tr|U7SGB4|U7SGB4_FUSNUAcetyl-CoAC-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02245PE=3SV=1	REV__tr|U7SGB4|U7SGB4_FUSNUAcetyl-CoAC-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02245PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	508.7000732421875	2	508.772188	1015.52982	-0.33428	-0.00017007	-0.080171	-4.0789E-05	-0.41446	-0.00021086	508.7722611133771	62.166	1.1779	62.166	61.891	63.069	0					49	22	3	0	0	0	0.56097	1	22354	22354		23.79	0	1	10480000	+		32250	28180	23384	23555	31455	31455					0.022679645752305078
LNAIRGDLDL	10	Unmodified	_LNAIRGDLDL_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	A375_MHC_IP_R1	1	550.6868286132812	2	550.308938	1098.60332	-0.51745	-0.00028476	2.07	0.0011391	1.5525	0.00085437	550.8104790654181	104.19	0.40802	104.19	104.03	104.44	0					10	7	2	0	0	0	0.78945	1	38318	38318		9.3831	0	1	970930	+		32251	22046	23385	23556	31456	31456					0.05796513017708094
LNARKRCDYG	10	Unmodified	_LNARKRCDYG_					0	0	0			REV__ENSG00000206530|ENST00000393845|CFAP44	REV__ENSG00000206530|ENST00000393845|CFAP44	MULTI-SECPEP	A375_MHC_IP_R2	2	398.6151123046875	3	399.204868	1194.59277	-0.35784	-0.00014285	1.8066	0.00072119	1.4487	0.00057834	399.2055918969862	24.325	0.20318	24.968	24.806	25.009	0.64368					5	3	2	0	0	0	0.87163	1	7915	7915		8.4443	0	1	1538400	+		32252	22597	23386	23557	31457	31457					0.003262070916207449
LNATKEVEN	9	Unmodified	_LNATKEVEN_					0	0	0			REV__nc|ENSG00000163072|Q8IVI9-3|NOSTRIN	REV__nc|ENSG00000163072|Q8IVI9-3|NOSTRIN	MULTI-SECPEP	A375_MHC_IP_R2	2	508.67999267578125	2	509.264196	1016.51384	-0.56256	-0.00028649	0.059441	3.0271E-05	-0.50312	-0.00025622	509.2641881586436	47.261	0.30629	48.022	47.817	48.123	0.76128					10	5	2	0	0	0	0.46045	1	17748	17748		29.082	0	1	3696700	+		32253	20335	23387	23558	31458	31458					0.006242583383254896
LNAYIPLVL	9	Unmodified	_LNAYIPLVL_					0	0	0			REV__ENSG00000204560|ENST00000376442|DHX16	REV__ENSG00000204560|ENST00000376442|DHX16	MULTI-SECPEP	A375_MHC_IP_R2	2	508.71148681640625	2	508.312961	1014.61137	-0.66805	-0.00033958	1.0158	0.00051636	0.34777	0.00017678	508.8161223279347	64.123	1.0171	64.863	64.344	65.361	0.74022					45	19	4	0	0	0	0.55359	1	24287	24287		21.747	0	1	4593800	+		32254	22524	23388	23559	31459	31459					0.10464692005132292
LNCTLNWPI	9	Unmodified	_LNCTLNWPI_					0	0	0		ENSG00000149150|ENST00000278426|SLC43A1;nc|ENSG00000149150|O75387-2|SLC43A1	ENSG00000149150|ENST00000278426|SLC43A1	ENSG00000149150|ENST00000278426|SLC43A1	MULTI-SECPEP	A375_MHC_IP_R2	2	536.7000732421875	2	537.276052	1072.53755	-0.76294	-0.00040991	-0.82922	-0.00044552	-1.5922	-0.00085543	537.2755149454858	79.325	0.55497	80.07	79.744	80.299	0.74474					24	10	3	0	0	0	0.67483	1	30144	30144		14.838	14.838	1	4156600			32255	5786	23389	23560	31460	31460					0.004184005711522332
LNDAQDIIV	9	Unmodified	_LNDAQDIIV_					0	0	0		nc|ENSG00000147852|P98155-2|VLDLR;ENSG00000147852|ENST00000382100|VLDLR	nc|ENSG00000147852|P98155-2|VLDLR	nc|ENSG00000147852|P98155-2|VLDLR	MULTI-SECPEP	A375_MHC_IP_R1	1	500.4749450683594	2	500.769114	999.523675	-0.33832	-0.00016942	1.7278	0.00086524	1.3895	0.00069582	500.7700610362299	103.12	0.40778	103.12	102.86	103.27	0					11	7	2	0	0	0	0.53748	1	37920	37920		30.637	3.7529	1	1037100			32256	5708	23390	23561	31461	31461					0.023894463437045488
LNDENNVI	8	Unmodified	_LNDENNVI_					0	0	0			REV__tr|U7T1T4|U7T1T4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00570PE=4SV=1	REV__tr|U7T1T4|U7T1T4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00570PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	465.1765441894531	2	465.729989	929.445425	-0.79022	-0.00036803	0.073431	3.4199E-05	-0.71679	-0.00033383	465.7299475790604	51.188	1.1145	51.94	51.511	52.626	0.75225					44	21	3	0	0	0	0.30564	1	19172	19172		74.423	3.7072	1	16302000	+		32257	28707	23391	23562	31462	31462					-0.022119862415138414
LNDERYQSFKL	11	Unmodified	_LNDERYQSFKL_					0	0	0		nc|ENSG00000107447|P04053-2|DNTT;ENSG00000107447|ENST00000371174|DNTT	nc|ENSG00000107447|P04053-2|DNTT	nc|ENSG00000107447|P04053-2|DNTT	MULTI-SECPEP	A375_MHC_IP_R1	1	471.69219970703125	3	471.577136	1411.70958	-0.41399	-0.00019523	-0.68578	-0.0003234	-1.0998	-0.00051863	471.5767771891689	57.789	0.35522	57.789	57.669	58.024	0					9	6	2	0	0	0	0.99482	1	20832	20832		9.2438	5.3674	1	1046000			32258	2740	23392	23563	31463	31463					0.020192237923765788
LNDFEPIQHEK	11	Unmodified	_LNDFEPIQHEK_					0	0	0			REV__nc|ENSG00000114127|Q8IZH2-3|XRN1	REV__nc|ENSG00000114127|Q8IZH2-3|XRN1	MULTI-SECPEP	A375_MHC_IP_R1	1	456.67181396484375	3	457.229736	1368.66738	-0.093335	-4.2676E-05	-0.54584	-0.00024958	-0.63918	-0.00029225	457.2294651289893	54.347	0.50576	54.347	54.113	54.619	0					15	9	3	0	0	0	0.99681	1	19410	19410		7.0371	0	1	1459500	+		32259	17814	23393	23564	31464	31464					-0.0022075161600696447
LNDFKPQDFH	10	Unmodified	_LNDFKPQDFH_					0	0	0		XYLT1|p.P576L|1|0.39|ENSG00000103489|chr16:17138392-17138392|G/A|missense_variant	XYLT1|p.P576L|1|0.39|ENSG00000103489|chr16:17138392-17138392|G/A|missense_variant	XYLT1|p.P576L|1|0.39|ENSG00000103489|chr16:17138392-17138392|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	630.15185546875	2	630.80402	1259.59349	-0.54525	-0.00034395	-3.1729	-0.0020015	-3.7182	-0.0023455	630.8001545435641	92.009	0.15279	92.009	91.906	92.059	0					4	2	2	0	0	0	0.93615	1	33778	33778		1.6526	0	1	355120			32260	30175	23394	23565	31465	31465					-0.025926749876816757
LNDIELRI	8	Unmodified	_LNDIELRI_					0	0	0			REV__ENST00000309957.2_2_13:111289482-111290624:+|nuORF	REV__ENST00000309957.2_2_13:111289482-111290624:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	493.1949462890625	2	493.287474	984.560395	-0.28357	-0.00013988	-0.32732	-0.00016146	-0.61089	-0.00030134	493.2873567135457	72.887	0.71074	72.887	72.524	73.235	0					38	13	4	0	0	0	0.31691	1	26390	26390		57.471	0	1	6082100	+		32261	23493	23395	23566	31466	31466					0.06749742960278127
LNDIELRI	8	Unmodified	_LNDIELRI_					0	0	0			REV__ENST00000309957.2_2_13:111289482-111290624:+|nuORF	REV__ENST00000309957.2_2_13:111289482-111290624:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	493.195068359375	2	493.287474	984.560395	-0.73776	-0.00036393	0.35627	0.00017574	-0.38149	-0.00018818	493.2877972023383	72.069	0.80849	72.803	72.314	73.122	0.73421					35	15	4	0	0	0	0.42086	1	27172	27172		52.268	0	1	8449300	+		32262	23493	23395	23566	31467	31467					0.06749742960278127
LNDKKAKKL	9	Unmodified	_LNDKKAKKL_					0	0	0		ENSG00000112276|ENST00000314641|BVES	ENSG00000112276|ENST00000314641|BVES	ENSG00000112276|ENST00000314641|BVES	MULTI-MSMS	A375_MHC_IP_R1	1	353.62884521484375	3	353.229119	1056.66553	-0.25265	-8.9242E-05	0.33999	0.00012009	0.08734	3.0851E-05	353.229256043228	24.325	0.40334	24.325	24.194	24.597	0					13	7	3	0	0	0	0.52197	1	6911	6911		18.721	0.85806	1	5993200			32263	3065	23396	23567	31468	31468					0.13946284156691036
LNDKREGQW	9	Unmodified	_LNDKREGQW_					0	0	0		tr|U7SFP2|U7SFP2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02367PE=4SV=1	tr|U7SFP2|U7SFP2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02367PE=4SV=1	tr|U7SFP2|U7SFP2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02367PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	573.6879272460938	2	573.288537	1144.56252	-0.35974	-0.00020623	-1.0188	-0.00058407	-1.3785	-0.0007903	573.287792233882	44.903	0.50945	45.672	45.492	46.001	0.7691					17	9	2	0	0	0	0.56537	1	16813	16813		22.736	2.2827	1	2001500			32264	29391	23397	23568	31469	31469					-0.003978283019023365
LNDLIQRL	8	Unmodified	_LNDLIQRL_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	A375_MHC_IP_R1	1	493.1949462890625	2	492.795466	983.57638	-0.20174	-9.9415E-05	-0.067449	-3.3239E-05	-0.26919	-0.00013265	492.79519173046975	72.492	0.50793	72.492	72.271	72.779	0					20	9	3	0	0	0	0.1978	1	26390	26390		96.111	3.6195	1	2349600			32265	3768	23398	23569	31470	31470					0.08393449197183145
LNDLIQRL	8	Unmodified	_LNDLIQRL_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	A375_MHC_IP_R2	2	493.195068359375	2	492.795466	983.57638	-0.81912	-0.00040366	-0.18018	-8.8793E-05	-0.9993	-0.00049245	492.795289191751	71.589	0.35419	72.324	72.111	72.465	0.73421					11	6	2	0	0	0	0.18771	1	27172	27172		99.755	14.114	1	2785700			32266	3768	23398	23569	31471	31471					0.08393449197183145
LNDLYISY	8	Unmodified	_LNDLYISY_					0	0	0		ENST00000437111.1_1_10:52389508-52390123:-|nuORF	ENST00000437111.1_1_10:52389508-52390123:-|nuORF	ENST00000437111.1_1_10:52389508-52390123:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.1946716308594	2	500.752933	999.491313	-0.25325	-0.00012682	0.14352	7.187E-05	-0.10973	-5.4947E-05	500.75289134122215	88.853	1.1168	88.853	88.409	89.526	0					63	21	5	0	0	0	0.73946	1	32491	32491		23.148	6.2061	1	20322000			32267	11935	23399	23570	31472	31472					-0.008453410592892396
LNDNFNTVV	9	Unmodified	_LNDNFNTVV_					0	0	0			REV__NPY5R|p.D392N|1|0.38|ENSG00000164129|chr4:163351447-163351447|G/A|missense_variant	REV__NPY5R|p.D392N|1|0.38|ENSG00000164129|chr4:163351447-163351447|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	518.6572265625	2	518.258914	1034.50327	-0.70712	-0.00036647	-1.6396	-0.00084976	-2.3468	-0.0012162	518.2579998594623	74.001	0.81532	74.738	74.296	75.111	0.73752					21	15	3	0	0	0	0.50892	1	28113	28113		19.362	4.9566	1	1676800	+		32268	27626	23400	23571	31473	31473					-0.01259724316082611
LNDNFNTVV	9	Unmodified	_LNDNFNTVV_					0	0	0			REV__NPY5R|p.D392N|1|0.38|ENSG00000164129|chr4:163351447-163351447|G/A|missense_variant	REV__NPY5R|p.D392N|1|0.38|ENSG00000164129|chr4:163351447-163351447|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	517.7051391601562	2	518.258914	1034.50327	-0.70712	-0.00036647	-1.6396	-0.00084976	-2.3468	-0.0012162	518.2579998594623	74.001	0.81532	74.738	74.296	75.111	0.73752					21	15	3	0	0	0	0.69381	1	28105	28105		20.415	3.4722	1	1676800	+		32269	27626	23400	23571	31474	31474					-0.01259724316082611
LNDQKFNEL	9	Unmodified	_LNDQKFNEL_					0	0	0		ENSG00000162601|ENST00000472487|MYSM1;nc|ENSG00000162601|Q5VVJ2-2|MYSM1;ENST00000401044.7_1_1:59134235-59156019:-|nuORF	ENSG00000162601|ENST00000472487|MYSM1	ENSG00000162601|ENST00000472487|MYSM1	MULTI-MSMS	A375_MHC_IP_R2	2	561.1859741210938	2	560.785296	1119.55604	-1.0659	-0.00059773	-2.6118	-0.0014647	-3.6777	-0.0020624	560.7854897007071	53.717	1.1229	54.468	54.097	55.22	0.75105					81	21	6	0	0	0	0.26169	1	20460	20460		33.445	2.1766	1	30114000			32270	6557	23401	23572	31475	31475					0.0010423374671972852
LNDRSTYHVMW	11	Unmodified	_LNDRSTYHVMW_					0	0	0			REV__PRKD3|p.A789Mfs*21|1|0.16|ENSG00000115825|chr2:37256710-37256711|-/AT|frameshift_variant	REV__PRKD3|p.A789Mfs*21|1|0.16|ENSG00000115825|chr2:37256710-37256711|-/AT|frameshift_variant	MSMS	A375_MHC_IP_R1	1	711.7822265625	2	711.335161	1420.65577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.56	1	143.56	143.06	144.06	0								0	0	0	0.16337	1	55071	55071		1.1933	0	1		+		32271	17915	23402	23573	31476	31476					-0.037732719109953905
LNDTMWCSW	9	Unmodified	_LNDTMWCSW_					0	0	0		nc|ENSG00000134955|Q8TED4-3|SLC37A2;ENST00000526405.5_1_11:124933263-124955028:+|nuORF;ENSG00000134955|ENST00000403796|SLC37A2;nc|ENSG00000134955|Q8TED4-2|SLC37A2	nc|ENSG00000134955|Q8TED4-3|SLC37A2	nc|ENSG00000134955|Q8TED4-3|SLC37A2	MSMS	A375_MHC_IP_R2	2	578.201171875	2	578.233527	1154.4525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.751	1	54.502	54.002	55.002	0.75105								0	0	0	0.15486	1	20297	20297		11.64	4.3511	1				32272	4629	23403	23574	31477	31477					-0.11854712956960611
LNDVEFREV	9	Unmodified	_LNDVEFREV_					0	0	0		ENST00000267869.8_1_15:59931333-59949661:-|nuORF;ENSG00000140307|ENST00000396060|GTF2A2	ENST00000267869.8_1_15:59931333-59949661:-|nuORF	ENST00000267869.8_1_15:59931333-59949661:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	560.7116088867188	2	560.785296	1119.55604	-1.0659	-0.00059773	-2.6118	-0.0014647	-3.6777	-0.0020624	560.7854897007071	53.717	1.1229	54.468	54.097	55.22	0.75105					81	21	6	0	0	0	0.50892	1	20145	20145		19.362	0.10495	1	30114000			32273	5140	23404	23575	31478	31478					0.0010423374671972852
LNDVTHVYN	9	Unmodified	_LNDVTHVYN_					0	0	0		ENSG00000184735|ENST00000327968|DDX53	ENSG00000184735|ENST00000327968|DDX53	ENSG00000184735|ENST00000327968|DDX53	MULTI-SECPEP	A375_MHC_IP_R1	1	537.6845703125	2	537.764363	1073.51417	-0.88615	-0.00047654	0.22687	0.000122	-0.65927	-0.00035453	537.764412047803	84.723	0.51047	84.723	84.596	85.107	0					15	9	2	0	0	0	0.63327	1	31021	31021		13.042	0.51092	1	1456900			32274	8606	23405	23576	31479	31479					-0.01964321941795788
LNDVTHVYN	9	Unmodified	_LNDVTHVYN_					0	0	0		ENSG00000184735|ENST00000327968|DDX53	ENSG00000184735|ENST00000327968|DDX53	ENSG00000184735|ENST00000327968|DDX53	MULTI-MATCH	A375_MHC_IP_R2	2		2	537.764363	1073.51417	-0.78838	-0.00042396	0.22123	0.00011897	-0.56715	-0.00030499	537.7644158722737	84.189	0.35886	84.929	84.663	85.022	0.73962	0.10278	-4.0165E-06	NaN	13.042	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1549500			32275	8606	23405	23576							-0.01964321941795788
LNEADLSRY	9	Unmodified	_LNEADLSRY_					0	0	0		PCDHA1|p.D638N|1|0.2|ENSG00000204970|chr5:140788202-140788202|G/A|missense_variant	PCDHA1|p.D638N|1|0.2|ENSG00000204970|chr5:140788202-140788202|G/A|missense_variant	PCDHA1|p.D638N|1|0.2|ENSG00000204970|chr5:140788202-140788202|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	541.169189453125	2	540.769645	1079.52474	-0.79751	-0.00043127	0.1152	6.2297E-05	-0.68231	-0.00036897	540.7696756727911	41.966	0.5626	42.74	42.555	43.118	0.77451					16	10	2	0	0	0	0.12592	1	15613	15613		46.021	3.9264	1	1951100			32276	15124	23406	23577	31480	31480					-0.011843392873743142
LNEADLSRY	9	Unmodified	_LNEADLSRY_					0	0	0		PCDHA1|p.D638N|1|0.2|ENSG00000204970|chr5:140788202-140788202|G/A|missense_variant	PCDHA1|p.D638N|1|0.2|ENSG00000204970|chr5:140788202-140788202|G/A|missense_variant	PCDHA1|p.D638N|1|0.2|ENSG00000204970|chr5:140788202-140788202|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	540.769645	1079.52474	-0.43878	-0.00023728	-0.55986	-0.00030275	-0.99864	-0.00054003	540.7691856671063	42.764	0.45534	42.764	42.436	42.891	0	0.012069	-0.00053666	NaN	46.021	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1385700			32277	15124	23406	23577							-0.011843392873743142
LNEDWLLWQVP	11	Unmodified	_LNEDWLLWQVP_					0	0	0		PLXNC1|p.G1440Tfs*6|1|0.9|ENSG00000136040|chr12:94300986-94300987|-/AC|frameshift_variant;ENSG00000136040|ENST00000258526|PLXNC1;ENST00000549187.1_1_12:94658920-94673460:+|nuORF;PLXNC1|p.V1203Afs*40|1|0.34|ENSG00000136040|chr12:94279482-94279482|T/-|frameshift_variant	PLXNC1|p.G1440Tfs*6|1|0.9|ENSG00000136040|chr12:94300986-94300987|-/AC|frameshift_variant	PLXNC1|p.G1440Tfs*6|1|0.9|ENSG00000136040|chr12:94300986-94300987|-/AC|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	471.6920471191406	3	471.578477	1411.7136	-0.97584	-0.00046019	-3.0207	-0.0014245	-3.9965	-0.0018847	471.9113226667288	57.193	0.35846	57.943	57.712	58.071	0.75015					9	6	2	0	0	0	0.99681	1	21608	21608		1.1098	0	1	1354400			32278	4744	23407	23578	31481	31481					0.024213132860722908
LNEGVKSNW	9	Unmodified	_LNEGVKSNW_					0	0	0			REV__LRRC31|p.G185E|1|0.19|ENSG00000114248|chr3:169856806-169856806|C/T|missense_variant	REV__LRRC31|p.G185E|1|0.19|ENSG00000114248|chr3:169856806-169856806|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	524.1661987304688	2	523.766906	1045.51926	-0.29225	-0.00015307	-1.2911	-0.00067625	-1.5834	-0.00082932	523.7657273593455	42.693	0.60802	42.693	42.487	43.095	0					15	11	2	0	0	0	0.59098	1	14810	14810		27.629	3.6082	1	2438000	+		32279	26951	23408	23579	31482	31482					-0.0016801807919364364
LNEGVKSNW	9	Unmodified	_LNEGVKSNW_					0	0	0			REV__LRRC31|p.G185E|1|0.19|ENSG00000114248|chr3:169856806-169856806|C/T|missense_variant	REV__LRRC31|p.G185E|1|0.19|ENSG00000114248|chr3:169856806-169856806|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	524.16650390625	2	523.766906	1045.51926	-0.4973	-0.00026047	-0.67046	-0.00035116	-1.1678	-0.00061163	523.7663669500672	41.959	0.46008	42.734	42.504	42.964	0.77451					14	8	2	0	0	0	0.50484	1	15605	15605		34.932	9.5328	1	3966300	+		32280	26951	23408	23579	31483	31483					-0.0016801807919364364
LNEHFDNE	8	Unmodified	_LNEHFDNE_					0	0	0			REV__KY|p.G62E|1|0.12|ENSG00000174611|chr3:134647449-134647449|C/T|missense_variant	REV__KY|p.G62E|1|0.12|ENSG00000174611|chr3:134647449-134647449|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	508.6800231933594	2	509.217246	1016.41994	0.024043	1.2243E-05	-0.81487	-0.00041495	-0.79083	-0.0004027	509.2171623087841	48.785	0.35544	48.785	48.577	48.933	0					13	6	4	0	0	0	0.972	1	17216	17216		4.756	0	1	1158600	+		32281	26877	23409	23580	31484	31484					-0.08761460763946616
LNEISEETTIQ	11	Unmodified	_LNEISEETTIQ_					0	0	0		ENSG00000164118|ENST00000503780|CEP44	ENSG00000164118|ENST00000503780|CEP44	ENSG00000164118|ENST00000503780|CEP44	MULTI-SECPEP	A375_MHC_IP_R1	1	639.1972045898438	2	638.81699	1275.61943	-0.43972	-0.0002809	0.035629	2.2761E-05	-0.4041	-0.00025814	639.3183680194688	44.315	0.30648	44.315	44.165	44.471	0					7	5	2	0	0	0	0.58862	1	15440	15440		20.581	4.0151	1	1082300			32282	6784	23410	23581	31485	31485					-0.007358703267072997
LNELLYFYRNF	11	Unmodified	_LNELLYFYRNF_					0	0	0			REV__ENSG00000121892|ENST00000303538|PDS5A	REV__ENSG00000121892|ENST00000303538|PDS5A	MULTI-SECPEP	A375_MHC_IP_R2	2	498.709716796875	3	497.925877	1490.7558	-0.43958	-0.00021888	0.85722	0.00042683	0.41764	0.00020796	498.26121326908395	133.35	0.70856	133.51	133.04	133.75	0.16487					16	13	2	0	0	0	1.0014	1	52437	52437		0.50596	0	1	2883800	+		32283	18175	23411	23582	31486	31486					0.03005288694475894
LNEPIHFDP	9	Unmodified	_LNEPIHFDP_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-SECPEP	A375_MHC_IP_R1	1	541.6826782226562	2	541.269281	1080.52401	-0.48819	-0.00026424	-0.18717	-0.00010131	-0.67537	-0.00036556	541.2694336112776	105.81	0.35553	105.81	105.65	106.01	0					9	6	2	0	0	0	0.53748	1	38885	38885		24.021	9.1823	1	1273500	+		32284	16825	23412	23583	31487	31487					-0.01303133936426093
LNEPIHFDP	9	Unmodified	_LNEPIHFDP_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-SECPEP	A375_MHC_IP_R2	2	541.681396484375	2	541.269281	1080.52401	-0.78916	-0.00042715	0.70052	0.00037917	-0.088642	-4.7979E-05	541.269888902058	105.16	0.55933	105.92	105.62	106.17	0.76308					17	10	3	0	0	0	0.53748	1	39775	39775		24.021	9.1823	1	1001700	+		32285	16825	23412	23583	31488	31488					-0.01303133936426093
LNEQKPRY	8	Unmodified	_LNEQKPRY_					0	0	0			REV__ENSG00000111046|ENST00000228641|MYF6	REV__ENSG00000111046|ENST00000228641|MYF6	MULTI-SECPEP	A375_MHC_IP_R2	2	524.16650390625	2	524.282723	1046.55089	-0.52676	-0.00027617	-0.86765	-0.00045489	-1.3944	-0.00073106	524.2821718741975	41.77	0.46056	42.545	42.401	42.862	0.77451					15	8	2	0	0	0	0.90224	1	15605	15605		19.439	0	1	2481300	+		32286	17648	23413	23584	31489	31489					0.02947974674748366
LNEQRLFQ	8	Unmodified	_LNEQRLFQ_					0	0	0		nc|ENSG00000114853|Q9UFB7-2|ZBTB47;ENSG00000114853|ENST00000232974|ZBTB47	nc|ENSG00000114853|Q9UFB7-2|ZBTB47	nc|ENSG00000114853|Q9UFB7-2|ZBTB47	MULTI-SECPEP	A375_MHC_IP_R1	1	524.1661987304688	2	524.282723	1046.55089	-0.31849	-0.00016698	-0.68255	-0.00035785	-1.001	-0.00052483	524.2823483549633	42.599	0.45482	42.599	42.386	42.841	0					12	8	2	0	0	0	0.95423	1	14810	14810		18.135	0	1	1762700			32287	3250	23414	23585	31490	31490					0.02947974674748366
LNERLYRI	8	Unmodified	_LNERLYRI_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.Y6402Ffs*2|1|0.34|ENSG00000183091|chr2:151492486-151492487|AT/-|frameshift_variant;NEB|p.V4554Gfs*42|1|0.12|ENSG00000183091|chr2:151562738-151562739|-/CC|frameshift_variant;NEB|p.L4555Rfs*43|1|0.12|ENSG00000183091|chr2:151562736-151562737|-/CCTGCTCT|frameshift_variant	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MULTI-SECPEP	A375_MHC_IP_R1	1	539.4744262695312	2	538.81419	1075.61383	-0.76532	-0.00041236	-0.46954	-0.000253	-1.2349	-0.00066536	538.8130121785714	83.804	0.50734	83.804	83.583	84.091	0					12	9	2	0	0	0	0.90775	1	30595	30595		20.454	5.6154	1	944920			32288	8464	23415	23586	31491	31491					0.07904540462800469
LNERLYRI	8	Unmodified	_LNERLYRI_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.Y6402Ffs*2|1|0.34|ENSG00000183091|chr2:151492486-151492487|AT/-|frameshift_variant;NEB|p.V4554Gfs*42|1|0.12|ENSG00000183091|chr2:151562738-151562739|-/CC|frameshift_variant;NEB|p.L4555Rfs*43|1|0.12|ENSG00000183091|chr2:151562736-151562737|-/CCTGCTCT|frameshift_variant	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MULTI-MATCH	A375_MHC_IP_R2	2		2	538.81419	1075.61383	-0.85939	-0.00046305	-2.3893	-0.0012874	-3.2487	-0.0017505	538.812768329516	82.865	0.6537	83.606	83.295	83.948	0.7406	-0.099058	-0.00087034	NaN	20.454	13	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1307000			32289	8464	23415	23586							0.07904540462800469
LNERQIKIW	9	Unmodified	_LNERQIKIW_					0	0	0		ENSG00000172789|ENST00000312492|HOXC5	ENSG00000172789|ENST00000312492|HOXC5	ENSG00000172789|ENST00000312492|HOXC5	MULTI-MSMS	A375_MHC_IP_R2	2	400.947509765625	3	400.568024	1198.68224	-0.057961	-2.3217E-05	0.36874	0.00014771	0.31078	0.00012449	400.56807413304347	30.773	0.30177	31.491	31.317	31.618	0.71857					11	5	3	0	0	0	0.69317	1	10812	10812		7.609	0.97858	1	1650100			32290	7737	23416	23587	31492	31492					0.0908478504265986
LNERQIKIW	9	Unmodified	_LNERQIKIW_					0	0	0		ENSG00000172789|ENST00000312492|HOXC5	ENSG00000172789|ENST00000312492|HOXC5	ENSG00000172789|ENST00000312492|HOXC5	MULTI-MATCH	A375_MHC_IP_R1	1		3	400.568024	1198.68224	-0.22858	-9.1562E-05	0.55274	0.00022141	0.32416	0.00012985	400.5683127247858	31.679	0.35648	31.679	31.565	31.921	0	0.093722	8.8219E-05	NaN	7.609	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1480000			32291	7737	23416	23587							0.0908478504265986
LNETKDFH	8	Unmodified	_LNETKDFH_					0	0	0		ENST00000572017.1_1_16:10958826-10982354:-|nuORF	ENST00000572017.1_1_16:10958826-10982354:-|nuORF	ENST00000572017.1_1_16:10958826-10982354:-|nuORF	MSMS	A375_MHC_IP_R1	1	502.18243408203125	2	502.245806	1002.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.28	1	143.28	142.78	143.78	0								0	0	0	0.16876	1	54969	54969		8.5933	0.68312	1				32292	13612	23417	23588	31493	31493					-0.02407993487577187
LNETRPCW	8	Unmodified	_LNETRPCW_					0	0	0			REV__ENST00000341011.11_1_17:41458737-41458863:-|nuORF	REV__ENST00000341011.11_1_17:41458737-41458863:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	509.1846008300781	2	509.742376	1017.4702	-0.48853	-0.00024902	1.9106	0.00097392	1.4221	0.00072489	509.74327690470864	77.108	0.4586	77.108	76.827	77.286	0					10	8	2	0	0	0	0.94479	1	28184	28184		8.5933	0	1	617030	+		32293	23728	23418	23589	31494	31494					-0.03783629639804076
LNEWGTIIF	9	Unmodified	_LNEWGTIIF_					0	0	0		ENST00000480292.5_1_3:158520095-158542024:+|nuORF;nc|ENSG00000118855|Q9H3U5-5|MFSD1	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	547.1367797851562	2	546.78985	1091.56515	-0.75107	-0.00041068	-2.4177	-0.001322	-3.1688	-0.0017326	547.2903149442242	62.972	0.45428	63.715	63.484	63.938	0.74263					12	8	2	0	0	0	0.74412	1	23942	23942		6.2058	0	1	1168500			32294	12496	23419	23590	31495	31495					0.023026271030403223
LNFAVAPGI	9	Unmodified	_LNFAVAPGI_					0	0	0		ENST00000261015.4_1_2:203759318-203760810:-|nuORF	ENST00000261015.4_1_2:203759318-203760810:-|nuORF	ENST00000261015.4_1_2:203759318-203760810:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	451.1073303222656	2	451.260728	900.506903	-0.16604	-7.4928E-05	0.0097125	4.3829E-06	-0.15633	-7.0545E-05	451.2606370653777	74.95	0.60834	74.95	74.502	75.11	0					18	11	3	0	0	0	0.3243	1	27270	27270		28.487	28.487	1	838810			32295	10272	23420	23591	31496	31496					0.05266990248424008
LNFPSKFYLFD	11	Unmodified	_LNFPSKFYLFD_					0	0	0		ENST00000560717.5_2_15:65295402-65319196:-|nuORF	ENST00000560717.5_2_15:65295402-65319196:-|nuORF	ENST00000560717.5_2_15:65295402-65319196:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	696.2569580078125	2	695.855721	1389.69689	-0.17838	-0.00012413	1.5944	0.0011094	1.416	0.00098531	695.8569469089595	69.739	0.55561	69.739	69.478	70.034	0					14	10	2	0	0	0	0.59391	1	25313	25313		23.79	11.549	1	1555600			32296	13499	23421	23592	31497	31497					0.01762812400124858
LNFPSKFYLFD	11	Unmodified	_LNFPSKFYLFD_					0	0	0		ENST00000560717.5_2_15:65295402-65319196:-|nuORF	ENST00000560717.5_2_15:65295402-65319196:-|nuORF	ENST00000560717.5_2_15:65295402-65319196:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	696.2569580078125	2	695.855721	1389.69689	-0.59042	-0.00041084	1.1845	0.00082423	0.59407	0.00041339	696.3580608634165	68.969	0.60786	69.704	69.474	70.082	0.73512					18	11	2	0	0	0	0.51633	1	26166	26166		29.841	0	1	2462500			32297	13499	23421	23592	31498	31498					0.01762812400124858
LNGETLEPL	9	Unmodified	_LNGETLEPL_					0	0	0			REV__nc|ENSG00000099331|Q13459-2|MYO9B	REV__nc|ENSG00000099331|Q13459-2|MYO9B	MULTI-MSMS	A375_MHC_IP_R1	1	493.1718444824219	2	493.263665	984.512776	-0.29274	-0.0001444	0.33737	0.00016641	0.044624	2.2011E-05	493.26378193766493	93.66	0.91402	93.66	93.176	94.09	0					64	17	5	0	0	0	0.17328	1	34565	34565		39.957	1.9833	1	57129000	+		32298	17018	23422	23593	31499	31499					0.01990043969431099
LNGGERVLY	9	Unmodified	_LNGGERVLY_					0	0	0		ENSG00000196990|ENST00000673969|FAM163B	ENSG00000196990|ENST00000673969|FAM163B	ENSG00000196990|ENST00000673969|FAM163B	MSMS	A375_MHC_IP_R2	2	510.69757080078125	2	510.777274	1019.53999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.26	1	102.03	101.53	102.53	0.76428								0	0	0	0.1499	1	38384	38384		21.747	0.87544	1				32299	9099	23423	23594	31500	31500					0.031005723004795982
LNGLGEYDF	9	Unmodified	_LNGLGEYDF_					0	0	0			REV__ENSG00000147459|ENST00000276440|DOCK5	REV__ENSG00000147459|ENST00000276440|DOCK5	MULTI-MSMS	A375_MHC_IP_R2	2	514.7106323242188	2	514.24019	1026.46583	-0.81042	-0.00041675	1.5321	0.00078785	0.72164	0.0003711	514.2402670514839	80.671	0.25386	81.416	81.214	81.468	0.74474					5	4	2	0	0	0	0.46038	1	30564	30564		21.747	1.293	1	1079300	+		32300	19589	23424	23595	31501	31501					-0.046348155816986036
LNGLLKGG	8	Unmodified	_LNGLLKGG_					0	0	0		KLHL31|p.E38K|1|0.14|ENSG00000124743|chr6:53655161-53655161|C/T|missense_variant	KLHL31|p.E38K|1|0.14|ENSG00000124743|chr6:53655161-53655161|C/T|missense_variant	KLHL31|p.E38K|1|0.14|ENSG00000124743|chr6:53655161-53655161|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	771.8726806640625	1	771.472315	770.465038	-0.82973	-0.00064012	1.5856	0.0012233	0.7559	0.00058316	771.4733638144932	143.71	0.25076	143.71	143.58	143.84	0					10	4	3	0	0	0	0.7779	1	55160	55160		2.5775	0	1	3842500			32301	14227	23425	23596	31502	31502					0.07062434559918529
LNGLLKGG	8	Unmodified	_LNGLLKGG_					0	0	0		KLHL31|p.E38K|1|0.14|ENSG00000124743|chr6:53655161-53655161|C/T|missense_variant	KLHL31|p.E38K|1|0.14|ENSG00000124743|chr6:53655161-53655161|C/T|missense_variant	KLHL31|p.E38K|1|0.14|ENSG00000124743|chr6:53655161-53655161|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	771.472315	770.465038	-0.74484	-0.00057462	2.3603	0.0018209	1.6154	0.0012462	771.4739785973179	143.74	0.30389	143.77	143.64	143.94	0.024414	0.028498	0.00022428	NaN	2.5775	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4208100			32302	14227	23425	23596							0.07062434559918529
LNGLLRKI	8	Unmodified	_LNGLLRKI_					0	0	0		RGPD3|p.E1675K|2|0.36|ENSG00000153165|chr2:106415891-106415891|C/T|missense_variant	RGPD3|p.E1675K|2|0.36|ENSG00000153165|chr2:106415891-106415891|C/T|missense_variant	RGPD3|p.E1675K|2|0.36|ENSG00000153165|chr2:106415891-106415891|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	464.2107849121094	2	463.810919	925.607286	-0.1309	-6.0712E-05	0.42133	0.00019542	0.29043	0.0001347	463.81090644855254	35.148	0.30544	35.148	35.013	35.319	0					9	5	3	0	0	0	0.92636	1	11702	11702		11.64	0	1	1656200			32303	29068	23426	23597	31503	31503					0.14150647302096786
LNGPNRKG	8	Unmodified	_LNGPNRKG_					0	0	0			REV__ENST00000566280.1_1_16:30064796-30066515:+|nuORF	REV__ENST00000566280.1_1_16:30064796-30066515:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	428.6433410644531	2	428.243401	854.472249	0.044081	1.8877E-05	0.15918	6.8167E-05	0.20326	8.7044E-05	428.24341373485925	106.4	2.4499	106.4	105.6	108.05	0					101	47	3	0	0	0	0.77797	1	39243	39243		2.3027	0	1	8564000	+		32304	26240	23427	23598	31504	31504					0.03919167160336201
LNGPNRKG	8	Unmodified	_LNGPNRKG_					0	0	0			REV__ENST00000566280.1_1_16:30064796-30066515:+|nuORF	REV__ENST00000566280.1_1_16:30064796-30066515:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	428.243401	854.472249	-0.20903	-8.9514E-05	-0.17031	-7.2934E-05	-0.37934	-0.00016245	428.2432773267048	105.86	2.39	106.62	105.76	108.15	0.75977	0.10789	-0.00012586	NaN	2.3027	96	46	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8043900	+		32305	26240	23427	23598							0.03919167160336201
LNGSNMNQCY	10	Unmodified	_LNGSNMNQCY_					0	0	0			REV__ENSG00000172023|ENST00000305089|REG1B	REV__ENSG00000172023|ENST00000305089|REG1B	MSMS	A375_MHC_IP_R1	1	572.251708984375	2	572.231516	1142.44848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.604	1	85.604	85.104	86.104	0								0	0	0	0.15372	1	31374	31374		8.7454	2.985	1		+		32306	17881	23428	23599	31505	31505					-0.1170480245066301
LNGTMETYY	9	Unmodified	_LNGTMETYY_					0	0	0		tr|U7SSR8|U7SSR8_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01356PE=4SV=1	tr|U7SSR8|U7SSR8_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01356PE=4SV=1	tr|U7SSR8|U7SSR8_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01356PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	545.7188110351562	2	546.239332	1090.46411	-0.67726	-0.00036994	-0.44026	-0.00024049	-1.1175	-0.00061043	546.2389970845181	87	0.86536	87.733	87.151	88.017	0.733					21	11	3	0	0	0	0.68216	1	32885	32885		8.5933	0.68312	1	2268900			32307	29647	23429	23600	31506	31506					-0.07750192661978872
LNHRWQQFWRL	11	Unmodified	_LNHRWQQFWRL_					0	0	0		SPTBN2|p.R944W|1|0.19|ENSG00000173898|chr11:66701269-66701269|G/A|missense_variant	SPTBN2|p.R944W|1|0.19|ENSG00000173898|chr11:66701269-66701269|G/A|missense_variant	SPTBN2|p.R944W|1|0.19|ENSG00000173898|chr11:66701269-66701269|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	528.6387939453125	3	528.616259	1582.82695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.872	1	82.872	82.372	83.372	0								0	0	0	0.16305	1	30313	30313		2.8433	0.4085	1				32308	29244	23430	23601	31507	31507					0.05884846242497588
LNHYLKSHR	9	Unmodified	_LNHYLKSHR_					0	0	0		CMTR2|p.I375Ffs*2|1|0.47|ENSG00000180917|chr16:71284797-71284798|AT/-|frameshift_variant;ENSG00000180917|ENST00000434935|CMTR2	CMTR2|p.I375Ffs*2|1|0.47|ENSG00000180917|chr16:71284797-71284798|AT/-|frameshift_variant	CMTR2|p.I375Ffs*2|1|0.47|ENSG00000180917|chr16:71284797-71284798|AT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	389.24969482421875	3	389.884235	1166.63087	-0.55861	-0.00021779	-0.93337	-0.00036391	-1.492	-0.0005817	389.8838971621198	36.6	0.30521	37.371	37.207	37.513	0.7709					11	5	3	0	0	0	0.79429	1	13320	13320		4.1895	0	1	1568300			32309	542	23431	23602	31508	31508					0.054224610686105734
LNIDEMPVV	9	Unmodified	_LNIDEMPVV_					0	0	0			REV__tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1	REV__tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	514.7106323242188	2	515.267893	1028.52123	-0.53939	-0.00027793	-1.3081	-0.00067404	-1.8475	-0.00095198	515.2689057667537	57.803	0.5081	57.803	57.618	58.126	0					14	9	2	0	0	0	0.60012	1	20826	20826		24.674	2.9272	1	845500	+		32310	28680	23432	23603	31509	31509					0.00811274614420654
LNIDEYTEV	9	Unmodified	_LNIDEYTEV_					0	0	0		tr|U7SJL4|U7SJL4_FUSNUMembranefusionproteinbiotin-lipoyllikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02097PE=3SV=1	tr|U7SJL4|U7SJL4_FUSNUMembranefusionproteinbiotin-lipoyllikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02097PE=3SV=1	tr|U7SJL4|U7SJL4_FUSNUMembranefusionproteinbiotin-lipoyllikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02097PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	549.1673583984375	2	548.263862	1094.51317	-0.29486	-0.00016166	-0.15222	-8.3459E-05	-0.44708	-0.00024512	548.2632995585114	112.05	1.6335	112.05	111.16	112.79	0					73	31	3	0	0	0	0.4867	1	40891	40891		20.454	0	1	12703000			32311	29461	23433	23604	31510	31510					-0.030305811013704442
LNIHLEKGS	9	Unmodified	_LNIHLEKGS_					0	0	0			REV__ENSG00000080824|ENST00000216281|HSP90AA1	REV__ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-SECPEP	A375_MHC_IP_R1	1	506.18426513671875	2	505.785099	1009.55564	-0.66282	-0.00033525	-0.19672	-9.95E-05	-0.85955	-0.00043475	505.7849295366757	29.054	0.35602	29.054	28.845	29.201	0					11	6	2	0	0	0	0.75164	1	9066	9066		9.3831	4.4861	1	3321000	+		32312	16759	23434	23605	31511	31511					0.051248588175326404
LNIKALEENII	11	Unmodified	_LNIKALEENII_					0	0	0			REV__tr|U7T617|U7T617_FUSNUSpermidine/putrescineimportATP-bindingproteinPotAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=potAPE=3SV=1	REV__tr|U7T617|U7T617_FUSNUSpermidine/putrescineimportATP-bindingproteinPotAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=potAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	635.773681640625	2	635.374278	1268.734	-1.0317	-0.00065553	0.46577	0.00029594	-0.56595	-0.00035959	635.3744266318951	142.97	0.90891	142.97	142.49	143.39	0					54	17	4	0	0	0	0.99955	1	54763	54763		2.9952	0	1	28777000	+		32313	28853	23435	23606	31512	31512					0.11038483945912958
LNIKALEENII	11	Unmodified	_LNIKALEENII_					0	0	0			REV__tr|U7T617|U7T617_FUSNUSpermidine/putrescineimportATP-bindingproteinPotAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=potAPE=3SV=1	REV__tr|U7T617|U7T617_FUSNUSpermidine/putrescineimportATP-bindingproteinPotAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=potAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	635.7743530273438	2	635.374278	1268.734	-0.59703	-0.00037934	0.011922	7.5747E-06	-0.58511	-0.00037176	635.3741374534527	143.03	0.96156	143.06	142.58	143.54	0.030731					62	18	5	0	0	0	0.7362	1	55985	55985		2.9952	0.26005	1	29679000	+		32314	28853	23435	23606	31513	31513					0.11038483945912958
LNIKDGLSLAM	11	Unmodified	_LNIKDGLSLAM_					0	0	0			REV__ENSG00000129083|ENST00000439561|COPB1	REV__ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	A375_MHC_IP_R2	2	588.2288208007812	2	587.828649	1173.64274	-0.53927	-0.000317	0.63602	0.00037387	0.096751	5.6873E-05	587.8289942619417	102.1	1.0687	102.87	102.31	103.38	0.76428					56	20	4	0	0	0	0.53345	1	38597	38597		28.495	3.5035	1	9161200	+		32315	18480	23436	23607	31514	31514					0.06286896976916978
LNIKDGLSLAM	11	Unmodified	_LNIKDGLSLAM_					0	0	0			REV__ENSG00000129083|ENST00000439561|COPB1	REV__ENSG00000129083|ENST00000439561|COPB1	MULTI-SECPEP	A375_MHC_IP_R2	2	587.3866577148438	2	587.828649	1173.64274	-0.53927	-0.000317	0.63602	0.00037387	0.096751	5.6873E-05	587.8289942619417	102.1	1.0687	102.87	102.31	103.38	0.76428					56	20	4	0	0	0	0.76597	1	38743	38743		28.495	10.348	1	9161200	+		32316	18480	23436	23607	31515	31515					0.06286896976916978
LNILKKRNY	9	Unmodified	_LNILKKRNY_					0	0	0			REV__tr|U7SU57|U7SU57_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01029PE=4SV=1	REV__tr|U7SU57|U7SU57_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01029PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	581.758544921875	2	581.358765	1160.70298	0.057873	3.3645E-05	-0.29791	-0.00017319	-0.24003	-0.00013955	581.3585905597696	48.076	0.35435	48.076	47.92	48.274	0					12	6	3	0	0	0	0.7235	1	16984	16984		7.9102	1.187	1	1911300	+		32317	28532	23437	23608	31516	31516					0.12905375422315046
LNILLKVK	8	Unmodified	_LNILLKVK_					0	0	0			REV__ENST00000487863.5_1_19:53056575-53056806:+|nuORF	REV__ENST00000487863.5_1_19:53056575-53056806:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	471.11041259765625	2	470.83132	939.648088	-0.9199	-0.00043312	-0.17329	-8.1591E-05	-1.0932	-0.00051471	470.83122858044476	24.492	0.20299	25.136	25.009	25.212	0.64368					6	3	2	0	0	0	0.77797	1	7992	7992		2.3027	0	1	4518000	+		32318	25342	23438	23609	31517	31517					0.17584988621695175
LNIPRPRTL	9	Unmodified	_LNIPRPRTL_					0	0	0		ENST00000530490.1_1_11:17035717-17073753:+|nuORF	ENST00000530490.1_1_11:17035717-17073753:+|nuORF	ENST00000530490.1_1_11:17035717-17073753:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	361.2645263671875	3	360.560981	1078.66111	-0.015496	-5.5871E-06	-0.022871	-8.2463E-06	-0.038366	-1.3833E-05	360.89528677170904	27.739	0.40357	27.739	27.533	27.937	0					18	7	3	0	0	0	0.65748	1	8414	8414		10.8	0.64894	1	4246000			32319	13149	23439	23610	31518	31518					0.12492819733802207
LNIRATYHL	9	Unmodified	_LNIRATYHL_					0	0	0			REV__OR1C1|p.M136I|3|0.17|ENSG00000221888|chr1:247757999-247757999|C/T|missense_variant	REV__OR1C1|p.M136I|3|0.17|ENSG00000221888|chr1:247757999-247757999|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	551.211669921875	2	550.81419	1099.61383	-0.59129	-0.00032569	-3.1214	-0.0017193	-3.7127	-0.002045	550.8121457016698	137.48	0.35884	137.57	137.3	137.66	0.083969					9	6	2	0	0	0	0.75466	1	53987	53987		1.8442	1.8442	1	1480700	+		32320	27655	23440	23611	31519	31519					0.06800540462791105
LNISTKVAL	9	Unmodified	_LNISTKVAL_					0	0	0		nc|ENSG00000136243|O15504-2|NUP42;ENSG00000136243|ENST00000258742|NUP42	nc|ENSG00000136243|O15504-2|NUP42	nc|ENSG00000136243|O15504-2|NUP42	MULTI-SECPEP	A375_MHC_IP_R2	2	480.199951171875	2	479.800217	957.585882	-0.50926	-0.00024434	-0.11658	-5.5934E-05	-0.62583	-0.00030028	479.8001464960633	73.279	0.45799	74.015	73.785	74.243	0.73541					15	8	2	0	0	0	0.16676	1	27818	27818		49.933	6.0747	1	1743900			32321	4770	23441	23612	31520	31520					0.1053921748269886
LNIVRFKNN	9	Unmodified	_LNIVRFKNN_					0	0	0		tr|U7SWW0|U7SWW0_FUSNU8-oxoguanineDNAglycosylase/APlyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=oggPE=3SV=1	tr|U7SWW0|U7SWW0_FUSNU8-oxoguanineDNAglycosylase/APlyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=oggPE=3SV=1	tr|U7SWW0|U7SWW0_FUSNU8-oxoguanineDNAglycosylase/APlyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=oggPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	372.9449157714844	3	373.220735	1116.64038	0.46838	0.00017481	2.2277	0.00083141	2.696	0.0010062	373.5563516636627	54.36	0.35394	54.36	54.213	54.567	0					10	6	2	0	0	0	0.74768	1	19412	19412		2.7352	0.23671	1	1774300			32322	29819	23442	23613	31521	31521					0.08672229354147021
LNKCALFEK	9	Unmodified	_LNKCALFEK_					0	0	0		ENST00000469611.1_1_15:52679971-52688515:-|nuORF;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	ENST00000469611.1_1_15:52679971-52688515:-|nuORF;nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-SECPEP	A375_MHC_IP_R2	2	532.6865234375	2	533.291702	1064.56885	-0.798	-0.00042557	0.22557	0.0001203	-0.57243	-0.00030527	533.7940372395601	129.2	0.60536	129.43	129.26	129.87	0.23946					32	11	5	0	0	0	0.55359	1	50775	50775		21.747	0.87544	1	19472000			32323	9167;12323	23443	23614	31522	31522					0.03914973605242267
LNKEMSHQRSY	11	Unmodified	_LNKEMSHQRSY_					0	0	0			REV__ENST00000413111.5_2_2:74606054-74607164:-|nuORF	REV__ENST00000413111.5_2_2:74606054-74607164:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	697.2388305664062	2	696.838068	1391.66158	-0.58039	-0.00040444	0.50895	0.00035466	-0.071441	-4.9783E-05	696.8381272897194	103.53	0.5088	103.53	103.32	103.83	0					12	9	2	0	0	0	0.82225	1	38074	38074		12.241	10.911	1	2122700	+		32324	24492	23444	23615	31523	31523					-0.018581733992959926
LNKLIHQS	8	Unmodified	_LNKLIHQS_					0	0	0		ENSG00000109832|ENST00000263576|DDX25	ENSG00000109832|ENST00000263576|DDX25	ENSG00000109832|ENST00000263576|DDX25	MULTI-SECPEP	A375_MHC_IP_R1	1	477.1820373535156	2	476.782359	951.550165	-0.59195	-0.00028223	0.15933	7.5967E-05	-0.43262	-0.00020626	476.782431251081	27.437	0.7572	27.437	27.229	27.987	0					43	14	4	0	0	0	0.73563	1	8293	8293		21.747	10.923	1	46541000			32325	2897	23445	23616	31524	31524					0.07245180025711306
LNKLIHQS	8	Unmodified	_LNKLIHQS_					0	0	0		ENSG00000109832|ENST00000263576|DDX25	ENSG00000109832|ENST00000263576|DDX25	ENSG00000109832|ENST00000263576|DDX25	MULTI-SECPEP	A375_MHC_IP_R2	2	477.1820373535156	2	476.782359	951.550165	-0.74016	-0.00035289	0.25299	0.00012062	-0.48716	-0.00023227	476.7824549071611	26.831	0.66455	27.491	27.313	27.977	0.65992					38	12	4	0	0	0	0.55372	1	9093	9093		39.957	7.6518	1	54142000			32326	2897	23445	23616	31525	31525					0.07245180025711306
LNKLKYCIL	9	Unmodified	_LNKLKYCIL_					0	0	0			REV__ENST00000447136.1_2_7:2376752-2393878:-|nuORF	REV__ENST00000447136.1_2_7:2376752-2393878:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	554.1893920898438	2	554.33337	1106.65219	-1.1345	-0.0006289	0.34909	0.00019351	-0.78541	-0.00043538	554.3335597128239	52.082	1.0152	52.834	52.574	53.59	0.75225					30	19	3	0	0	0	0.71541	1	19855	19855		11.64	11.64	1	11185000	+		32327	24864	23446	23617	31526	31526					0.10312710053085539
LNKLKYCIL	9	Unmodified	_LNKLKYCIL_					0	0	0			REV__ENST00000447136.1_2_7:2376752-2393878:-|nuORF	REV__ENST00000447136.1_2_7:2376752-2393878:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	554.33337	1106.65219	-0.73379	-0.00040676	0.86819	0.00048127	0.13441	7.4506E-05	554.333756191071	53.009	0.9626	53.009	52.744	53.707	0	0.087607	0.00027336	NaN	11.64	31	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14536000	+		32328	24864	23446	23617							0.10312710053085539
LNKLVGRKE	9	Unmodified	_LNKLVGRKE_					0	0	0		ENSG00000276240|ENST00000641792|OR4E1	ENSG00000276240|ENST00000641792|OR4E1	ENSG00000276240|ENST00000641792|OR4E1	MULTI-SECPEP	A375_MHC_IP_R1	1	528.165283203125	2	528.82984	1055.64513	-0.1779	-9.4079E-05	0.020594	1.0891E-05	-0.15731	-8.3189E-05	528.8296303447114	48.377	0.1517	48.377	48.274	48.426	0					4	2	2	0	0	0	0.76452	1	17054	17054		7.9102	0	1	1212100			32329	10021	23447	23618	31527	31527					0.11953113496906553
LNKLVGRKE	9	Unmodified	_LNKLVGRKE_					0	0	0		ENSG00000276240|ENST00000641792|OR4E1	ENSG00000276240|ENST00000641792|OR4E1	ENSG00000276240|ENST00000641792|OR4E1	MULTI-MATCH	A375_MHC_IP_R2	2		2	528.82984	1055.64513	-0.36913	-0.00019521	0.92715	0.0004903	0.55801	0.00029509	529.3317912557366	47.337	0.15294	48.099	47.97	48.123	0.76128	-0.13942	0.00010666	NaN	4.3292	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	783180			32330	10021	23447	23618							0.11953113496906553
LNKMKEMEKEY	11	Unmodified	_LNKMKEMEKEY_					0	0	0			REV__ENST00000580649.1_1_17:73035029-73035402:-|nuORF	REV__ENST00000580649.1_1_17:73035029-73035402:-|nuORF	MSMS	A375_MHC_IP_R2	2	721.8209228515625	2	721.854538	1441.69452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.73	1	137.81	137.31	138.31	0.083969								0	0	0	0.16312	1	54041	54041		2.4985	0	1		+		32331	20799	23448	23619	31528	31528					-0.008657273914877806
LNKNKITNYGI	11	Unmodified	_LNKNKITNYGI_					0	0	0		ENSG00000139330|ENST00000266719|KERA	ENSG00000139330|ENST00000266719|KERA	ENSG00000139330|ENST00000266719|KERA	MULTI-SECPEP	A375_MHC_IP_R1	1	639.2783203125	2	639.364244	1276.71394	-0.53278	-0.00034064	-0.079345	-5.073E-05	-0.61213	-0.00039137	639.3642206584283	78.189	0.81161	78.189	77.895	78.707	0					37	15	4	0	0	0	0.80621	1	28574	28574		31.268	6.2774	1	10149000			32332	5071	23449	23620	31529	31529					0.08664733005934977
LNKNYQLK	8	Unmodified	_LNKNYQLK_					0	0	0			REV__ENSG00000164961|ENST00000318410|WASHC5	REV__ENSG00000164961|ENST00000318410|WASHC5	MULTI-SECPEP	A375_MHC_IP_R2	2	510.9739685058594	2	510.795466	1019.57638	-0.93369	-0.00047692	0.2716	0.00013873	-0.66209	-0.00033819	510.79543762105	30.049	0.40588	30.761	30.652	31.057	0.71217					14	7	3	0	0	0	0.972	1	10654	10654		11.64	4.9171	1	1687000	+		32333	20534	23450	23621	31530	31530					0.06737449197180467
LNKQIEEPL	9	Unmodified	_LNKQIEEPL_					0	0	0			REV__ENST00000489350.5_1_3:156547118-156638402:+|nuORF	REV__ENST00000489350.5_1_3:156547118-156638402:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	542.6943969726562	2	542.305864	1082.59717	-0.93559	-0.00050738	0.32192	0.00017458	-0.61368	-0.0003328	542.3060693116112	44.697	0.45646	45.466	45.138	45.594	0.7691					13	8	2	0	0	0	0.73008	1	16698	16698		12.241	0.74595	1	2190600	+		32334	25369	23451	23622	31531	31531					0.05917994786182135
LNKRESVIQQR	11	Unmodified	_LNKRESVIQQR_					0	0	0		nc|ENSG00000198300|Q9GZU2-3|PEG3;nc|ENSG00000198300|Q9GZU2-2|PEG3;nc|ENSG00000198300|Q9GZU2-4|PEG3;ENSG00000198300|ENST00000326441|PEG3	nc|ENSG00000198300|Q9GZU2-3|PEG3	nc|ENSG00000198300|Q9GZU2-3|PEG3	MULTI-SECPEP	A375_MHC_IP_R1	1	686.2964477539062	2	685.896774	1369.779	-0.97899	-0.00067148	0.11253	7.7187E-05	-0.86645	-0.0005943	685.897009400806	142.97	0.55493	142.97	142.64	143.19	0					19	10	2	0	0	0	0.99955	1	54825	54825		2.9952	0.71247	1	2002600			32335	9252	23452	23623	31532	31532					0.10889727531798599
LNKVELRY	8	Unmodified	_LNKVELRY_					0	0	0			REV__tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1	REV__tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	517.176513671875	2	517.803291	1033.59203	-0.68006	-0.00035214	1.8054	0.00093485	1.1253	0.00058271	517.8042516200657	42.08	0.61452	42.853	42.401	43.015	0.77378					14	11	2	0	0	0	0.90224	1	15533	15533		19.439	10.694	1	2330800	+		32336	28354	23453	23624	31533	31533					0.07657735714224145
LNKVISQIN	9	Unmodified	_LNKVISQIN_					0	0	0			REV__ENST00000574951.5_1_17:4871308-4871557:-|nuORF	REV__ENST00000574951.5_1_17:4871308-4871557:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	515.2084350585938	2	514.808574	1027.60259	-0.75025	-0.00038623	0.39981	0.00020583	-0.35043	-0.00018041	514.808731736683	23.402	0.25562	23.402	23.278	23.533	0					10	4	3	0	0	0	0.73008	1	6455	6455		17.113	0	1	5148700	+		32337	26302	23454	23625	31534	31534					0.08989718368684407
LNKWNTLY	8	Unmodified	_LNKWNTLY_					0	0	0			REV__tr|U7T1T0|U7T1T0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00565PE=4SV=1	REV__tr|U7T1T0|U7T1T0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00565PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	526.1843872070312	2	526.282192	1050.54983	-0.46873	-0.00024669	-1.2607	-0.00066351	-1.7295	-0.00091019	526.2811712502264	77.476	1.6288	78.219	77.504	79.132	0.74294					65	31	4	0	0	0	0.7338	1	29570	29570		24.674	1.5255	1	18632000	+		32338	28706	23455	23626	31535	31535					0.026577603058512977
LNKWNTLYR	9	Unmodified	_LNKWNTLYR_					0	0	0			REV__tr|U7T1T0|U7T1T0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00565PE=4SV=1	REV__tr|U7T1T0|U7T1T0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00565PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	403.2558898925781	3	403.224257	1206.65094	-0.31082	-0.00012533	0.099053	3.9941E-05	-0.21176	-8.5388E-05	403.22427875736787	38.241	0.56144	39.015	38.739	39.3	0.77451					25	10	3	0	0	0	0.61998	1	14127	14127		9.544	4.1413	1	6948500	+		32339	28706	23456	23627	31536	31536					0.05588212008547089
LNKYEIIKKLY	11	Unmodified	_LNKYEIIKKLY_					0	0	0			REV__tr|U7SKB1|U7SKB1_FUSNUCRISPR-associatedhelicasecas3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02172PE=3SV=1	REV__tr|U7SKB1|U7SKB1_FUSNUCRISPR-associatedhelicasecas3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02172PE=3SV=1	MSMS	A375_MHC_IP_R1	1	712.9298706054688	2	712.92922	1423.84389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.09	1	45.09	44.59	45.59	0								0	0	0	0.16354	1	15763	15763		0.30703	0	1		+		32340	28249	23457	23628	31537	31537					0.14891909285097427
LNLEDRDTRI	10	Unmodified	_LNLEDRDTRI_					0	0	0		tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1	tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1	tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	416.2788391113281	3	415.557964	1243.65206	0.15168	6.3032E-05	-2.4994	-0.0010387	-2.3477	-0.00097562	415.5568692885472	24.523	0.40256	24.523	24.245	24.647	0					12	7	2	0	0	0	0.92445	1	6920	6920		7.0371	1.9896	1	1541500			32341	29585	23458	23629	31538	31538					0.039983815868026795
LNLEDRDTRI	10	Unmodified	_LNLEDRDTRI_					0	0	0		tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1	tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1	tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		3	415.557964	1243.65206	-0.26972	-0.00011209	-1.769	-0.00073514	-2.0388	-0.00084722	415.55723234558815	24.093	0.30506	24.737	24.602	24.907	0.64368	0.10697	0.00017313	NaN	10.315	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	944960			32342	29585	23458	23629							0.039983815868026795
LNLGIKELRER	11	Unmodified	_LNLGIKELRER_					0	0	0			REV__nc|ENSG00000008196|Q92481-2|TFAP2B	REV__nc|ENSG00000008196|Q92481-2|TFAP2B	MULTI-MSMS	A375_MHC_IP_R1	1	671.2957153320312	2	670.904068	1339.79358	-0.97147	-0.00065176	-4.1472	-0.0027824	-5.1187	-0.0034342	671.4036853464953	143.12	0.45305	143.12	142.79	143.24	0					12	8	2	0	0	0	0.7362	1	54937	54937		2.9952	0.26005	1	3153100	+		32343	27091	23459	23630	31539	31539					0.13727799679918462
LNLIHNQFY	9	Unmodified	_LNLIHNQFY_					0	0	0			REV__ENST00000054666.10_1_1:7839979-7840126:+|nuORF	REV__ENST00000054666.10_1_1:7839979-7840126:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	581.7058715820312	2	581.306198	1160.59784	-0.56445	-0.00032812	0.021061	1.2243E-05	-0.54339	-0.00031588	581.3062805944423	49.263	0.55695	50.021	49.69	50.247	0.75737					20	10	3	0	0	0	0.71541	1	18546	18546		11.64	0	1	2217200	+		32344	23009	23460	23631	31540	31540					0.023968342258967823
LNLKGPIKF	9	Unmodified	_LNLKGPIKF_					0	0	0			REV__ENST00000591114.1_1_19:38180830-38182440:-|nuORF	REV__ENST00000591114.1_1_19:38180830-38182440:-|nuORF	MSMS	A375_MHC_IP_R2	2	515.35400390625	2	515.326402	1028.63825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.556	1	67.292	66.792	67.792	0.73631								0	0	0	0.15486	1	25216	25216		11.64	0	1		+		32345	26442	23461	23632	31541	31541					0.1250780061632213
LNLKIIRWFSV	11	Unmodified	_LNLKIIRWFSV_					0	0	0			REV__ABCB1|p.M701I|1|0.52|ENSG00000085563|chr7:87544237-87544237|C/T|missense_variant	REV__ABCB1|p.M701I|1|0.52|ENSG00000085563|chr7:87544237-87544237|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	694.8712768554688	2	694.924272	1387.83399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.458	1	99.218	98.718	99.718	0.75977								0	0	0	0.16265	1	37353	37353		4.897	0.36815	1		+		32346	15284	23462	23633	31542	31542					0.15558766070353158
LNLKIPRVIAL	11	Unmodified	_LNLKIPRVIAL_					0	0	0		nc|ENSG00000147724|Q49AJ0-3|FAM135B;nc|ENSG00000147724|Q49AJ0-4|FAM135B;nc|ENSG00000147724|Q49AJ0-2|FAM135B;ENST00000482951.6_1_8:139144838-139379577:-|nuORF;ENSG00000147724|ENST00000395297|FAM135B	nc|ENSG00000147724|Q49AJ0-3|FAM135B	nc|ENSG00000147724|Q49AJ0-3|FAM135B	MSMS	A375_MHC_IP_R2	2	417.6281433105469	3	417.283336	1248.82818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.65	1	143.67	143.17	144.17	0.024414								0	0	0	0.16351	1	56133	56133		0.45452	0.29519	1				32347	5703	23463	23634	31543	31543					0.2137166755871931
LNLLGSSNPP	10	Unmodified	_LNLLGSSNPP_					0	0	0		ENST00000475614.6_1_1:42929522-42948338:+|nuORF;ENST00000477155.5_1_1:42938911-42948338:+|nuORF;ENST00000556539.5_1_12:56736081-56736417:-|nuORF	ENST00000475614.6_1_1:42929522-42948338:+|nuORF	ENST00000475614.6_1_1:42929522-42948338:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	506.6765441894531	2	506.277106	1010.53966	-1.2302	-0.00062282	0.13423	6.7956E-05	-1.096	-0.00055487	506.2771580202664	52.784	0.81052	53.535	53.031	53.842	0.75105					33	15	3	0	0	0	0.60238	1	19857	19857		32.786	0	1	21630000			32348	12421	23464	23635	31544	31544					0.03481152580627622
LNLLKNTPS	9	Unmodified	_LNLLKNTPS_					0	0	0		ENSG00000164902|ENST00000297540|PHAX	ENSG00000164902|ENST00000297540|PHAX	ENSG00000164902|ENST00000297540|PHAX	MULTI-SECPEP	A375_MHC_IP_R1	1	499.6268005371094	2	500.295299	998.576045	-0.56254	-0.00028144	0.38309	0.00019166	-0.17946	-8.9782E-05	500.2954958896423	66.249	0.35547	66.249	66.122	66.478	0					10	6	2	0	0	0	0.54812	1	23989	23989		24.991	14.167	1	1002000			32349	6891	23465	23636	31545	31545					0.07670029477333173
LNLNKTSFP	9	Unmodified	_LNLNKTSFP_					0	0	0			REV__TLR4|p.D60N|1|0.54|ENSG00000136869|chr9:117708647-117708647|G/A|missense_variant	REV__TLR4|p.D60N|1|0.54|ENSG00000136869|chr9:117708647-117708647|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	517.22607421875	2	517.287474	1032.5604	-0.72758	-0.00037637	-0.28503	-0.00014744	-1.0126	-0.00052381	517.2873897656715	67.504	1.2196	68.24	67.495	68.715	0.73631					72	23	4	0	0	0	0.38603	1	25534	25534		25.399	6.1423	1	28541000	+		32350	28121	23466	23637	31546	31546					0.04541742960304873
LNLNNQTSI	9	Unmodified	_LNLNNQTSI_					0	0	0			REV__tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1	REV__tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	509.1855773925781	2	508.772188	1015.52982	-0.33428	-0.00017007	-0.080171	-4.0789E-05	-0.41446	-0.00021086	508.7722611133771	62.166	1.1779	62.166	61.891	63.069	0					49	22	3	0	0	0	0.32092	1	22664	22664		29.082	0.58707	1	10480000	+		32351	28469	23467	23638	31547	31547					0.022679645752418764
LNLPGTLFRL	10	Unmodified	_LNLPGTLFRL_					0	0	0			REV__ENST00000485620.1_1_7:6851426-6854399:-|nuORF	REV__ENST00000485620.1_1_7:6851426-6854399:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	382.63531494140625	3	381.901003	1142.68118	-0.59642	-0.00022777	4.1491	0.0015846	3.5527	0.0013568	382.2358193165657	37.28	0.35488	38.05	37.816	38.171	0.7709					20	6	4	0	0	0	0.62871	1	13665	13665		18.721	3.7641	1	3553200	+		32352	25310	23468	23639	31548	31548					0.11554570673752096
LNLRLRNFRW	10	Unmodified	_LNLRLRNFRW_					0	0	0			REV__CYP11B1|p.P146L|1|0.48|ENSG00000160882|chr8:142877181-142877181|G/A|missense_variant	REV__CYP11B1|p.P146L|1|0.48|ENSG00000160882|chr8:142877181-142877181|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	693.7197875976562	2	694.407112	1386.79967	-0.62005	-0.00043057	-0.43863	-0.00030459	-1.0587	-0.00073516	694.406912540128	73.907	0.25439	73.907	73.74	73.995	0					6	4	2	0	0	0	0.93799	1	26882	26882		1.4819	0	1	939120	+		32353	15946	23469	23640	31549	31549					0.12174362702103281
LNLSERQRRRE	11	Unmodified	_LNLSERQRRRE_					0	0	0			REV__ENST00000430546.1_1_2:168671597-168726282:-|nuORF	REV__ENST00000430546.1_1_2:168671597-168726282:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	485.66485595703125	3	486.274562	1455.80186	-0.86398	-0.00042013	1.9309	0.00093895	1.0669	0.00051881	486.2762679473206	24.108	0.25369	24.751	24.653	24.907	0.64368					5	4	2	0	0	0	0.99424	1	7845	7845		2.2527	1.0379	1	1264800	+		32354	24697	23470	23641	31550	31550					0.09218746649276
LNLSTNPKL	9	Unmodified	_LNLSTNPKL_					0	0	0			REV__SLC27A6|p.D537N|1|0.38|ENSG00000113396|chr5:129029633-129029633|G/A|missense_variant	REV__SLC27A6|p.D537N|1|0.38|ENSG00000113396|chr5:129029633-129029633|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	499.70574951171875	2	500.295299	998.576045	-0.68889	-0.00034465	0.31397	0.00015708	-0.37493	-0.00018757	500.2955172987322	65.408	0.40666	66.147	65.917	66.324	0.73811					12	7	2	0	0	0	0.35487	1	24791	24791		22.736	11.242	1	1238400	+		32355	27984	23471	23642	31551	31551					0.07670029477333173
LNLTEVHVW	9	Unmodified	_LNLTEVHVW_					0	0	0			REV__ENST00000488221.5_1_17:18156710-18157010:-|nuORF	REV__ENST00000488221.5_1_17:18156710-18157010:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	556.8087158203125	2	555.800749	1109.58694	-0.24531	-0.00013635	-0.072413	-4.0247E-05	-0.31773	-0.00017659	555.8006687885345	49.59	1.1218	49.59	49.235	50.357	0					56	21	4	0	0	0	0.75032	1	17694	17694		4.3292	0	1	45872000	+		32356	21471	23472	23643	31552	31552					0.03653431851603273
LNLTGADTV	9	Unmodified	_LNLTGADTV_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1;nc|ENSG00000095564|O14981-2|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-SECPEP	A375_MHC_IP_R2	2	451.6641540527344	2	452.242732	902.470912	-0.46691	-0.00021116	0.0711	3.2154E-05	-0.39581	-0.000179	452.2427052282537	41.262	1.0172	42.037	41.794	42.811	0.77451					25	19	2	0	0	0	0.71541	1	15490	15490		3.9444	0	1	6423800			32357	2045	23473	23644	31553	31553					0.015774882809068913
LNMAGPETL	9	Unmodified	_LNMAGPETL_					0	0	0		FECH|p.G77A|1|0.31|ENSG00000066926|chr18:57573330-57573330|C/G|missense_variant	FECH|p.G77A|1|0.31|ENSG00000066926|chr18:57573330-57573330|C/G|missense_variant	FECH|p.G77A|1|0.31|ENSG00000066926|chr18:57573330-57573330|C/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	473.1819152832031	2	473.239135	944.463718	-0.50137	-0.00023727	0.51245	0.00024251	0.011087	5.2466E-06	473.23918587749375	81.246	0.45616	81.246	80.999	81.455	0					13	8	2	0	0	0	0.51106	1	29658	29658		19.257	0	1	2285600			32358	13994	23474	23645	31554	31554					-0.010735675911632825
LNMKYWKL	8	Unmodified	_LNMKYWKL_					0	0	0			REV__MMP13|p.S114Y|1|0.27|ENSG00000137745|chr11:102955273-102955273|G/T|missense_variant	REV__MMP13|p.S114Y|1|0.27|ENSG00000137745|chr11:102955273-102955273|G/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	365.9174499511719	3	365.872167	1094.59467	0.031389	1.1484E-05	-1.9014	-0.00069565	-1.87	-0.00068417	365.87092667041844	32.861	0.20356	32.861	32.734	32.938	0					5	3	2	0	0	0	0.97144	1	10625	10625		6.7232	0.099709	1	684700	+		32359	27024	23475	23646	31555	31555					0.05115867847530353
LNMLGWFY	8	Unmodified	_LNMLGWFY_					0	0	0			REV__CDH20|p.D27N|3|0.29|ENSG00000101542|chr18:61490632-61490632|G/A|missense_variant	REV__CDH20|p.D27N|3|0.29|ENSG00000101542|chr18:61490632-61490632|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	522.2171630859375	2	522.254588	1042.49462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.991	1	83.991	83.491	84.491	0								0	0	0	0.16876	1	30752	30752		8.5933	3.3626	1		+		32360	15622	23476	23647	31556	31556					-0.02492369486253665
LNNEEAQLP	9	Unmodified	_LNNEEAQLP_					0	0	0		nc|ENSG00000183597|Q6ICL3-5|TANGO2;nc|ENSG00000183597|Q6ICL3-2|TANGO2;nc|ENSG00000183597|Q6ICL3-3|TANGO2;ENSG00000183597|ENST00000327374|TANGO2;nc|ENSG00000183597|Q6ICL3-4|TANGO2	nc|ENSG00000183597|Q6ICL3-5|TANGO2	nc|ENSG00000183597|Q6ICL3-5|TANGO2	MSMS	A375_MHC_IP_R1	1	514.2050170898438	2	514.256371	1026.49819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.93	1	131.93	131.43	132.43	0								0	0	0	0.15486	1	50869	50869		7.2892	0	1				32361	8508	23477	23648	31557	31557					-0.014000281787048152
LNNNDYEGI	9	Unmodified	_LNNNDYEGI_					0	0	0		CLCA1|p.G31D|1|0.59|ENSG00000016490|chr1:86469063-86469063|G/A|missense_variant	CLCA1|p.G31D|1|0.59|ENSG00000016490|chr1:86469063-86469063|G/A|missense_variant	CLCA1|p.G31D|1|0.59|ENSG00000016490|chr1:86469063-86469063|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	526.6381225585938	2	526.238178	1050.4618	-0.35833	-0.00018857	0.25855	0.00013606	-0.099777	-5.2507E-05	526.2386357503898	90.204	0.71362	90.936	90.545	91.258	0.7318					20	13	2	0	0	0	0.75466	1	34361	34361		7.9102	0	1	1360100			32362	532	23478	23649	31558	31558					-0.06140905075426417
LNNVQAFTQPL	11	Unmodified	_LNNVQAFTQPL_					0	0	0			REV__ENSG00000116668|ENST00000367500|SWT1	REV__ENSG00000116668|ENST00000367500|SWT1	MULTI-SECPEP	A375_MHC_IP_R2	2	415.257080078125	3	415.559305	1243.65609	-0.30875	-0.0001283	-0.40536	-0.00016845	-0.7141	-0.00029675	415.8936559062341	23.492	0.3542	24.122	23.928	24.283	0.63014					9	6	2	0	0	0	0.9681	1	7553	7553		7.4771	0	1	2329800	+		32363	17962	23479	23650	31559	31559					0.04400471080521129
LNPDVERSL	9	Unmodified	_LNPDVERSL_					0	0	0		ENST00000460859.1_1_1:46126839-46153731:-|nuORF	ENST00000460859.1_1_1:46126839-46153731:-|nuORF	ENST00000460859.1_1_1:46126839-46153731:-|nuORF	MSMS	A375_MHC_IP_R1	1	521.7316284179688	2	521.780013	1041.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.833	1	63.833	63.333	64.333	0								0	0	0	0.15486	1	23086	23086		8.7454	1.4562	1				32364	12175	23480	23651	31560	31560					0.026362510922808724
LNPIGDDKPKK	11	Unmodified	_LNPIGDDKPKK_					0	0	0			REV__ENSG00000214814|ENST00000522917|FER1L6	REV__ENSG00000214814|ENST00000522917|FER1L6	MULTI-SECPEP	A375_MHC_IP_R1	1	613.2103881835938	2	612.85097	1223.68739	-0.5165	-0.00031654	-0.29986	-0.00018377	-0.81635	-0.0005003	612.8505834998903	91.106	0.25266	91.106	90.997	91.249	0					6	4	2	0	0	0	0.99778	1	33485	33485		4.5289	1.5336	1	860540	+		32365	22662	23481	23652	31561	31561					0.08449044114604476
LNPKWTKWLQK	11	Unmodified	_LNPKWTKWLQK_					0	0	0		ENSG00000155252|ENST00000370631|PI4K2A	ENSG00000155252|ENST00000370631|PI4K2A	ENSG00000155252|ENST00000370631|PI4K2A	MULTI-SECPEP	A375_MHC_IP_R1	1	721.8206176757812	2	721.419354	1440.82415	-0.79939	-0.0005767	2.6889	0.0019399	1.8896	0.0013632	721.4210865609011	131.18	0.45441	131.18	131.02	131.48	0					12	8	2	0	0	0	0.99838	1	50600	50600		0.86438	0	1	2770600			32366	6133	23482	23653	31562	31562					0.12137578064994159
LNPLIQKYVNR	11	Unmodified	_LNPLIQKYVNR_					0	0	0		tr|U7SP34|U7SP34_FUSNUCorrinoidadenosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01712PE=3SV=1	tr|U7SP34|U7SP34_FUSNUCorrinoidadenosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01712PE=3SV=1	tr|U7SP34|U7SP34_FUSNUCorrinoidadenosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01712PE=3SV=1	MSMS	A375_MHC_IP_R2	2	679.7881469726562	2	679.401161	1356.78777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.49	1	143.52	143.02	144.02	0.024414								0	0	0	0.16297	1	56077	56077		3.2813	0.28607	1				32367	29567	23483	23654	31563	31563					0.1236470116828059
LNPLVLNLV	9	Unmodified	_LNPLVLNLV_					0	0	0			REV__ENSG00000074416|ENST00000265052|MGLL	REV__ENSG00000074416|ENST00000265052|MGLL	MULTI-SECPEP	A375_MHC_IP_R2	2	498.1408996582031	2	497.81841	993.622267	-0.92793	-0.00046194	0.28974	0.00014424	-0.63819	-0.0003177	497.81848843311514	37.426	0.35833	38.197	37.968	38.327	0.7709					10	6	2	0	0	0	0.75466	1	13604	13604		12.532	1.7076	1	1895300	+		32368	16635	23484	23655	31564	31564					0.12520094379419788
LNPLVLNLV	9	Unmodified	_LNPLVLNLV_					0	0	0			REV__ENSG00000074416|ENST00000265052|MGLL	REV__ENSG00000074416|ENST00000265052|MGLL	MULTI-MATCH	A375_MHC_IP_R1	1		2	497.81841	993.622267	-0.585	-0.00029122	0.38001	0.00018917	-0.20499	-0.00010205	497.81852725633115	38.449	0.4099	38.449	38.218	38.628	0	0.12607	5.8541E-05	NaN	12.532	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1736900	+		32369	16635	23484	23655							0.12520094379419788
LNPPKVGS	8	Unmodified	_LNPPKVGS_					0	0	0		ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	MULTI-MSMS	A375_MHC_IP_R1	1	811.825927734375	1	811.467229	810.459953	-0.75339	-0.00061135	1.3341	0.0010826	0.58075	0.00047126	811.4679836056508	143.55	0.54053	143.55	143.39	143.94	0					16	10	3	0	0	0	0.77797	1	55196	55196		2.3027	1.5091	1	2927200			32370	5951	23485	23656	31565	31565					0.04714130697288965
LNPQNQQSY	9	Unmodified	_LNPQNQQSY_					0	0	0			REV__nc|ENSG00000147130|Q14202-2|ZMYM3	REV__nc|ENSG00000147130|Q14202-2|ZMYM3	MSMS	A375_MHC_IP_R1	1	546.2576904296875	2	546.259445	1090.50434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.256	1	83.256	82.756	83.756	0								0	0	0	0.15486	1	30461	30461		12.532	0.89125	1		+		32371	19571	23486	23657	31566	31566					-0.037295099471975846
LNPSPQVQ	8	Unmodified	_LNPSPQVQ_					0	0	0		ENSG00000284526|ENST00000640006|unknown	ENSG00000284526|ENST00000640006|unknown	ENSG00000284526|ENST00000640006|unknown	MULTI-SECPEP	A375_MHC_IP_R1	1	882.313232421875	1	882.467958	881.460681	-0.12388	-0.00010932	-0.01737	-1.5328E-05	-0.14125	-0.00012465	882.4678782964916	56.376	0.76253	56.376	56.041	56.804	0					33	14	3	0	0	0	0.96266	1	20125	20125		16.942	0	1	16655000			32372	10055	23487	23658	31567	31567					0.015209253463353889
LNPTPFSW	8	Unmodified	_LNPTPFSW_					0	0	0		ENST00000318186.6_1_4:85888210-85890882:+|nuORF	ENST00000318186.6_1_4:85888210-85890882:+|nuORF	ENST00000318186.6_1_4:85888210-85890882:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	961.8715209960938	1	961.477794	960.470518	0.3524	0.00033882	-2.2473	-0.0021608	-1.8949	-0.0018219	961.4743683133411	116.81	0.2017	116.81	116.7	116.9	0					5	3	2	0	0	0	0.95423	1	42892	42892		12.532	4.6214	1	4861000			32373	10671	23488	23659	31568	31568					-0.011298866482889025
LNPVLRHLF	9	Unmodified	_LNPVLRHLF_					0	0	0		ENST00000301258.4_1_8:143763566-143763959:+|nuORF	ENST00000301258.4_1_8:143763566-143763959:+|nuORF	ENST00000301258.4_1_8:143763566-143763959:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	554.2305908203125	2	554.834926	1107.6553	-1.217	-0.00067521	-0.00029584	-1.6414E-07	-1.2173	-0.00067537	554.8350706715602	52.507	0.25209	53.259	53.134	53.386	0.75225					6	4	2	0	0	0	0.77003	1	19838	19838		11.64	0	1	968130			32374	10544	23489	23660	31569	31569					0.1057772122210281
LNPYERLNIQ	10	Unmodified	_LNPYERLNIQ_					0	0	0			REV__nc|ENSG00000135899|Q9HB58-5|SP110	REV__nc|ENSG00000135899|Q9HB58-5|SP110	MULTI-SECPEP	A375_MHC_IP_R2	2	630.7286987304688	2	630.340769	1258.66699	-0.82826	-0.00052209	1.2988	0.00081869	0.47054	0.0002966	630.3411468765842	130.31	0.15213	130.53	130.4	130.55	0.2142					4	2	2	0	0	0	0.55307	1	51199	51199		29.841	8.3036	1	5042700	+		32375	18894	23490	23661	31570	31570					0.04799873454794579
LNQFRQLREF	10	Unmodified	_LNQFRQLREF_					0	0	0			REV__ENSG00000134815|ENST00000328771|DHX34	REV__ENSG00000134815|ENST00000328771|DHX34	MULTI-SECPEP	A375_MHC_IP_R1	1	451.6768493652344	3	450.914083	1349.72042	-0.46322	-0.00020887	-0.23233	-0.00010476	-0.69555	-0.00031363	450.91396930428397	23.559	0.30553	23.559	23.33	23.635	0					7	5	2	0	0	0	0.92227	1	6510	6510		5.0475	1.9753	1	5681400	+		32376	18803	23491	23662	31571	31571					0.05954670957316921
LNQGIGIV	8	Unmodified	_LNQGIGIV_					0	0	0			REV__tr|U7SV52|U7SV52_FUSNUGlucose-1-phosphateadenylyltransferase,GlgDsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01132PE=3SV=1	REV__tr|U7SV52|U7SV52_FUSNUGlucose-1-phosphateadenylyltransferase,GlgDsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01132PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	813.882568359375	1	813.482879	812.475603	-0.37652	-0.00030629	-0.21911	-0.00017824	-0.59563	-0.00048454	813.4827040818609	98.822	0.50893	98.822	98.507	99.015	0					14	9	2	0	0	0	0.10584	1	36317	36317		93.883	19.487	1	2012100	+		32377	28584	23492	23663	31572	31572					0.061864172143259566
LNQGIGIV	8	Unmodified	_LNQGIGIV_					0	0	0			REV__tr|U7SV52|U7SV52_FUSNUGlucose-1-phosphateadenylyltransferase,GlgDsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01132PE=3SV=1	REV__tr|U7SV52|U7SV52_FUSNUGlucose-1-phosphateadenylyltransferase,GlgDsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01132PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	813.482879	812.475603	-0.37652	-0.00030629	-0.21911	-0.00017824	-0.59563	-0.00048454	813.4827040818609	98.822	0.50893	98.822	98.507	99.015	0	0.02494	-8.9028E-05	NaN	93.883	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2012100	+		32378	28584	23492	23663							0.061864172143259566
LNQGIGIV	8	Unmodified	_LNQGIGIV_					0	0	0			REV__tr|U7SV52|U7SV52_FUSNUGlucose-1-phosphateadenylyltransferase,GlgDsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01132PE=3SV=1	REV__tr|U7SV52|U7SV52_FUSNUGlucose-1-phosphateadenylyltransferase,GlgDsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01132PE=3SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		1	813.482879	812.475603	-0.91514	-0.00074445	0.11853	9.6426E-05	-0.7966	-0.00064802	813.4833139845389	98.012	0.61039	98.772	98.385	98.995	0.75977	-0.02494	0.00018564	NaN	93.883	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1939000	+		32379	28584	23492	23663							0.061864172143259566
LNQITELN	8	Unmodified	_LNQITELN_					0	0	0			REV__ENST00000506586.1_1_5:93928514-93929327:+|nuORF	REV__ENST00000506586.1_1_5:93928514-93929327:+|nuORF	MSMS	A375_MHC_IP_R2	2	472.6898193359375	2	472.756007	943.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.323	1	45.093	44.593	45.593	0.7691								0	0	0	0.16876	1	16541	16541		14.838	1.7958	1		+		32380	25556	23493	23664	31573	31573					0.023451771722307058
LNQKNIKKI	9	Unmodified	_LNQKNIKKI_					0	0	0			REV__nc|ENSG00000099308|O60307|MAST3	REV__nc|ENSG00000099308|O60307|MAST3	MULTI-SECPEP	A375_MHC_IP_R1	1	550.1821899414062	2	549.853316	1097.69208	-0.43041	-0.00023666	-0.57198	-0.00031451	-1.0024	-0.00055117	549.8527931794046	51.296	0.25587	51.296	51.168	51.424	0					7	4	2	0	0	0	0.76827	1	18198	18198		10.824	3.7222	1	669350	+		32381	17017	23494	23665	31574	31574					0.14713973048060325
LNQKVYEI	8	Unmodified	_LNQKVYEI_					0	0	0			REV__METTL6|p.P123L|1|0.08|ENSG00000206562|chr3:15415935-15415935|G/A|missense_variant	REV__METTL6|p.P123L|1|0.08|ENSG00000206562|chr3:15415935-15415935|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	503.6891174316406	2	503.782025	1005.5495	-0.98166	-0.00049454	-2.1726	-0.0010945	-3.1543	-0.0015891	503.7820183534429	61.437	0.90728	62.182	61.819	62.726	0.74503					29	17	2	0	0	0	0.96266	1	23482	23482		11.64	0	1	2195600	+		32382	27012	23495	23666	31575	31575					0.04694340586001999
LNQKVYEI	8	Unmodified	_LNQKVYEI_					0	0	0			REV__METTL6|p.P123L|1|0.08|ENSG00000206562|chr3:15415935-15415935|G/A|missense_variant	REV__METTL6|p.P123L|1|0.08|ENSG00000206562|chr3:15415935-15415935|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	503.782025	1005.5495	-0.27363	-0.00013785	-2.0122	-0.0010137	-2.2859	-0.0011516	503.7820118080429	62.383	0.66525	62.383	62.046	62.711	0	0.10043	8.1442E-05	NaN	11.64	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2132200	+		32383	27012	23495	23666							0.04694340586001999
LNQPLGGL	8	Unmodified	_LNQPLGGL_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	MULTI-MSMS	A375_MHC_IP_R2	2	811.8667602539062	1	811.467229	810.459953	-0.67471	-0.00054751	1.2151	0.00098605	0.54043	0.00043854	811.4680825926357	143.59	0.50085	143.61	143.44	143.94	0.024414					15	9	2	0	0	0	0.77839	1	56109	56109		0.79363	0	1	3611300			32384	4288	23496	23667	31576	31576					0.04714130697300334
LNQWEDFNY	9	Unmodified	_LNQWEDFNY_					0	0	0			REV__ENST00000479830.2_1_5:68339466-68339598:-|nuORF	REV__ENST00000479830.2_1_5:68339466-68339598:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1229.9300537109375	1	1228.52693	1227.51965	0.1619	0.00019889	-0.06288	-7.7249E-05	0.099017	0.00012164	1229.5299046828638	74.847	0.35602	75.585	75.416	75.772	0.73752					11	6	2	0	0	0	0.59266	1	28401	28401		15.847	0	1	3517800	+		32385	25237	23497	23668	31577	31577					-0.08500643149977805
LNQYAGLLTRK	11	Unmodified	_LNQYAGLLTRK_					0	0	0		ENST00000176763.9_1_5:171470328-171470631:-|nuORF	ENST00000176763.9_1_5:171470328-171470631:-|nuORF	ENST00000176763.9_1_5:171470328-171470631:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	639.2721557617188	2	638.872237	1275.72992	-0.8434	-0.00053882	0.51509	0.00032908	-0.32831	-0.00020975	638.8725919383354	52.844	0.60735	52.844	52.592	53.199	0					36	11	4	0	0	0	0.79027	1	18788	18788		33.445	16.332	1	21029000			32386	10071	23498	23669	31578	31578					0.10308439242817258
LNQYYQRDELL	11	Unmodified	_LNQYYQRDELL_					0	0	0		ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	MULTI-MSMS	A375_MHC_IP_R1	1	485.2107238769531	3	485.580658	1453.72014	-0.50505	-0.00024524	-0.51601	-0.00025056	-1.0211	-0.0004958	485.58109590698785	132.97	1.0208	132.97	132.49	133.51	0					56	19	4	0	0	0	0.73636	1	51377	51377		2.8433	0.21205	1	7922700			32387	3030	23499	23670	31579	31579					0.011432064468408498
LNRELIETI	9	Unmodified	_LNRELIETI_					0	0	0		ENSG00000196476|ENST00000360321|C20orf96	ENSG00000196476|ENST00000360321|C20orf96	ENSG00000196476|ENST00000360321|C20orf96	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2183837890625	2	550.819138	1099.62372	-0.53991	-0.00029739	-0.3121	-0.00017191	-0.85202	-0.00046931	550.8189204997041	75.295	0.55431	75.295	75.009	75.564	0					22	10	3	0	0	0	0.14572	1	27435	27435		45.7	1.9272	1	4308100			32388	9047	23500	23671	31580	31580					0.0778968367753805
LNREPIKNL	9	Unmodified	_LNREPIKNL_					0	0	0			REV__nc|ENSG00000170921|Q9HCD6|TANC2	REV__nc|ENSG00000170921|Q9HCD6|TANC2	MULTI-SECPEP	A375_MHC_IP_R1	1	549.2271118164062	2	548.827298	1095.64004	-0.73665	-0.00040429	0.32679	0.00017935	-0.40986	-0.00022494	548.8274096711151	39.937	0.6616	39.937	39.541	40.203	0					30	12	3	0	0	0	0.35628	1	13647	13647		51.63	20.361	1	17280000	+		32389	21033	23501	23672	31581	31581					0.09604809634288358
LNREPIKNL	9	Unmodified	_LNREPIKNL_					0	0	0			REV__nc|ENSG00000170921|Q9HCD6|TANC2	REV__nc|ENSG00000170921|Q9HCD6|TANC2	MULTI-SECPEP	A375_MHC_IP_R2	2	549.2268676757812	2	548.827298	1095.64004	-1.0266	-0.00056343	0.20542	0.00011274	-0.82119	-0.00045069	548.8273503178642	38.954	0.56387	39.729	39.401	39.965	0.77451					29	10	3	0	0	0	0.26374	1	14321	14321		51.63	18.185	1	12534000	+		32390	21033	23501	23672	31582	31582					0.09604809634288358
LNRHLHTW	8	Unmodified	_LNRHLHTW_					0	0	0		nc|ENSG00000171791|P10415-2|BCL2;ENSG00000171791|ENST00000333681|BCL2	nc|ENSG00000171791|P10415-2|BCL2	nc|ENSG00000171791|P10415-2|BCL2	MULTI-SECPEP	A375_MHC_IP_R2	2	538.2142333984375	2	538.79105	1075.56755	-1.4363	-0.00077386	-0.68759	-0.00037047	-2.1239	-0.0011443	538.7906287455329	53.338	0.66083	54.089	53.588	54.249	0.75105					20	12	2	0	0	0	0.96266	1	20125	20125		7.2892	0.56607	1	1805700			32391	7638	23502	23673	31583	31583					0.032785203513640226
LNRHSPFGTQ	10	Unmodified	_LNRHSPFGTQ_					0	0	0		HFM1|p.P972S|1|0.24|ENSG00000162669|chr1:91316169-91316169|G/A|missense_variant	HFM1|p.P972S|1|0.24|ENSG00000162669|chr1:91316169-91316169|G/A|missense_variant	HFM1|p.P972S|1|0.24|ENSG00000162669|chr1:91316169-91316169|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	386.59991455078125	3	386.200111	1155.5785	0.060501	2.3365E-05	-0.95019	-0.00036696	-0.88969	-0.0003436	386.1996465636721	43.746	0.50415	44.515	44.228	44.732	0.7691					23	9	3	0	0	0	0.6502	1	16338	16338		10.899	0.58372	1	3019600			32392	14121	23503	23674	31584	31584					0.006938779350093682
LNRIGRYIN	9	Unmodified	_LNRIGRYIN_					0	0	0			REV__ENSG00000138095|ENST00000260665|LRPPRC	REV__ENSG00000138095|ENST00000260665|LRPPRC	MULTI-SECPEP	A375_MHC_IP_R1	1	560.2049560546875	2	559.825089	1117.63563	-0.71224	-0.00039873	-1.3961	-0.00078156	-2.1083	-0.0011803	559.8242185855859	36.82	0.45331	36.82	36.592	37.045	0					14	8	2	0	0	0	0.71541	1	12306	12306		3.9444	0	1	3323700	+		32393	19063	23504	23675	31585	31585					0.08151345211376793
LNRILRPAL	9	Unmodified	_LNRILRPAL_					0	0	0			REV__ENST00000488141.5_1_22:37887199-37892645:-|nuORF	REV__ENST00000488141.5_1_22:37887199-37892645:-|nuORF	MSMS	A375_MHC_IP_R2	2	533.41357421875	2	533.3482	1064.68185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.254	1	89.985	89.485	90.485	0.7318								0	0	0	0.15486	1	33967	33967		7.9102	3.1541	1		+		32394	17047	23505	23676	31586	31586					0.15209410113470767
LNRIQAQLQ	9	Unmodified	_LNRIQAQLQ_					0	0	0			REV__ENSG00000033100|ENST00000035307|CHPF2	REV__ENSG00000033100|ENST00000035307|CHPF2	MULTI-SECPEP	A375_MHC_IP_R2	2	361.2646179199219	3	361.88049	1082.61964	-0.3121	-0.00011294	2.8068	0.0010157	2.4947	0.00090279	362.2163187353475	26.986	0.25676	27.646	27.466	27.722	0.65992					5	4	2	0	0	0	0.75466	1	9189	9189		2.4985	0	1	685530	+		32395	16305	23506	23677	31587	31587					0.08163638974451715
LNRKEVLTL	9	Unmodified	_LNRKEVLTL_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-SECPEP	A375_MHC_IP_R1	1	543.690185546875	2	543.337498	1084.66044	-0.28314	-0.00015384	-0.31145	-0.00016922	-0.5946	-0.00032307	543.3373478620763	48.211	0.3046	48.211	47.97	48.274	0					9	5	2	0	0	0	0.78348	1	17016	17016		4.3292	0	1	1586200			32396	6139	23507	23678	31588	31588					0.12149980294088891
LNRLLNLKI	9	Unmodified	_LNRLLNLKI_					0	0	0			REV__FSIP2|p.T6548Lfs*12|1|0.3|ENSG00000188738|chr2:185808944-185808944|A/-|frameshift_variant	REV__FSIP2|p.T6548Lfs*12|1|0.3|ENSG00000188738|chr2:185808944-185808944|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	366.2428894042969	3	366.244881	1095.71281	-0.012621	-4.6222E-06	0.054702	2.0034E-05	0.042081	1.5412E-05	366.2448730205612	39.323	4.275	40.097	39.351	43.626	0.77451					115	83	2	0	0	0	0.4875	1	14392	14392		20.415	0.78858	1	2971200	+		32397	26655	23508	23679	31589	31589					0.16878563427690096
LNRLNKESEES	11	Unmodified	_LNRLNKESEES_					0	0	0			REV__ENSG00000131899|ENST00000316843|LLGL1	REV__ENSG00000131899|ENST00000316843|LLGL1	MULTI-SECPEP	A375_MHC_IP_R1	1	440.31610107421875	3	440.224762	1317.65246	-0.38746	-0.00017057	1.0466	0.00046074	0.65913	0.00029017	440.5596236482845	36.8	0.45464	36.8	36.541	36.996	0					19	8	3	0	0	0	0.99227	1	12397	12397		4.7159	1.1289	1	1963500	+		32398	18626	23509	23680	31590	31590					0.006337565160038139
LNRQIPNLW	9	Unmodified	_LNRQIPNLW_					0	0	0			REV__nc|ENSG00000196867|Q8NHY6-2|ZFP28	REV__nc|ENSG00000196867|Q8NHY6-2|ZFP28	MULTI-MSMS	A375_MHC_IP_R1	1	385.57342529296875	3	385.220735	1152.64038	0.37183	0.00014324	-1.2124	-0.00046705	-0.84059	-0.00032381	385.22033854714056	45.946	0.35613	45.946	45.738	46.094	0					9	6	2	0	0	0	0.72761	1	16058	16058		4.5289	0	1	841940	+		32399	22234	23510	23681	31591	31591					0.07016229354121606
LNRQIPNLW	9	Unmodified	_LNRQIPNLW_					0	0	0			REV__nc|ENSG00000196867|Q8NHY6-2|ZFP28	REV__nc|ENSG00000196867|Q8NHY6-2|ZFP28	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	385.220735	1152.64038	-0.23653	-9.1115E-05	-0.85546	-0.00032954	-1.092	-0.00042065	385.22050162039665	44.92	0.35709	45.689	45.594	45.951	0.76909	-0.12832	0.00023629	NaN	4.5289	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1023000	+		32400	22234	23510	23681							0.07016229354121606
LNRRPNKYQ	9	Unmodified	_LNRRPNKYQ_					0	0	0			REV__ENSG00000188868|ENST00000293725|ZNF563	REV__ENSG00000188868|ENST00000293725|ZNF563	MULTI-SECPEP	A375_MHC_IP_R1	1	594.6557006835938	2	594.833446	1187.65234	-0.54841	-0.00032621	2.105	0.0012521	1.5566	0.0009259	594.8350007875989	94.727	0.40803	94.727	94.497	94.905	0					11	7	2	0	0	0	0.75466	1	34772	34772		7.9102	1.7044	1	1530600	+		32401	22120	23511	23682	31592	31592					0.06601846097328234
LNRTVVNI	8	Unmodified	_LNRTVVNI_					0	0	0		ENSG00000116096|ENST00000234454|SPR	ENSG00000116096|ENST00000234454|SPR	ENSG00000116096|ENST00000234454|SPR	MULTI-SECPEP	A375_MHC_IP_R1	1	464.68450927734375	2	464.782359	927.550165	-0.19732	-9.1712E-05	1.0788	0.00050139	0.88143	0.00040968	464.7830558394034	33.566	0.45737	33.566	33.241	33.698	0					15	8	3	0	0	0	0.76996	1	10941	10941		36.127	12.106	1	4209200			32402	3367	23512	23683	31593	31593					0.08349180025709302
LNSAMNDF	8	Unmodified	_LNSAMNDF_					0	0	0		nc|ENSG00000173809|Q587J7|TDRD12;ENSG00000173809|ENST00000639142|TDRD12;chr19:32749869-32755992|98|32.31|0.99|5.03|+|ENST00000647536|TDRD12,TDRD12;chr19:32748531-32749784|109|38.4|0.97|5.31|+|ENST00000647536|TDRD12,TDRD12;nc|ENSG00000173809|Q587J7-2|TDRD12	nc|ENSG00000173809|Q587J7|TDRD12	nc|ENSG00000173809|Q587J7|TDRD12	MSMS	A375_MHC_IP_R1	1	456.2084045410156	2	456.20001	910.385467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.863	1	57.863	57.363	58.363	0								0	0	0	0.16876	1	20771	20771		8.5933	0.68312	1				32403	453	23513	23684	31594	31594					-0.07331000176407088
LNSAMNDF	8	Unmodified	_LNSAMNDF_					0	0	0		nc|ENSG00000173809|Q587J7|TDRD12;ENSG00000173809|ENST00000639142|TDRD12;chr19:32749869-32755992|98|32.31|0.99|5.03|+|ENST00000647536|TDRD12,TDRD12;chr19:32748531-32749784|109|38.4|0.97|5.31|+|ENST00000647536|TDRD12,TDRD12;nc|ENSG00000173809|Q587J7-2|TDRD12	nc|ENSG00000173809|Q587J7|TDRD12	nc|ENSG00000173809|Q587J7|TDRD12	MSMS	A375_MHC_IP_R1	1	456.2078857421875	2	456.20001	910.385467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.982	1	57.982	57.482	58.482	0								0	0	0	0.16876	1	20818	20818		8.5933	0.68312	1				32404	453	23513	23684	31595	31595					-0.07331000176407088
LNSIHLSYSPD	11	Unmodified	_LNSIHLSYSPD_					0	0	0			REV__chr1:159951866-159953309|258|12.04|0.18|6.04|-|ENST00000368092|SLAMF9,SLAMF9	REV__chr1:159951866-159953309|258|12.04|0.18|6.04|-|ENST00000368092|SLAMF9,SLAMF9	MULTI-SECPEP	A375_MHC_IP_R1	1	622.6610717773438	2	623.309135	1244.60372	-0.55755	-0.00034753	2.105	0.001312	1.5474	0.00096452	623.3082155595284	91.505	0.15262	91.505	91.401	91.554	0					4	2	2	0	0	0	0.98524	1	33592	33592		7.1017	0	1	792870	+		32405	15668	23514	23685	31596	31596					-0.00880112053096127
LNSKDQEVL	9	Unmodified	_LNSKDQEVL_					0	0	0		nc|ENSG00000138698|P52306-2|RAP1GDS1;nc|ENSG00000138698|P52306-3|RAP1GDS1;nc|ENSG00000138698|P52306-4|RAP1GDS1;ENSG00000138698|ENST00000408927|RAP1GDS1;nc|ENSG00000138698|P52306-5|RAP1GDS1;nc|ENSG00000138698|P52306-6|RAP1GDS1;ENST00000503745.1_1_4:99273670-99308609:+|nuORF;ENST00000512857.5_1_4:99182716-99308609:+|nuORF;ENST00000511379.5_1_4:99182716-99300325:+|nuORF;ENST00000505378.5_1_4:99182716-99313239:+|nuORF;ENST00000507303.5_1_4:99182716-99313239:+|nuORF	nc|ENSG00000138698|P52306-2|RAP1GDS1	nc|ENSG00000138698|P52306-2|RAP1GDS1	MULTI-SECPEP	A375_MHC_IP_R1	1	523.6797485351562	2	523.279846	1044.54514	-0.30518	-0.0001597	-0.34745	-0.00018181	-0.65264	-0.00034151	523.2796226394998	54.17	0.70786	54.17	53.962	54.67	0					16	13	2	0	0	0	0.69507	1	19349	19349		19.257	7.6167	1	2423700			32406	5024	23515	23686	31597	31597					0.02464831372435583
LNSKNNPL	8	Unmodified	_LNSKNNPL_					0	0	0		tr|U7SU55|U7SU55_FUSNUDUF4125domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01105PE=4SV=1	tr|U7SU55|U7SU55_FUSNUDUF4125domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01105PE=4SV=1	tr|U7SU55|U7SU55_FUSNUDUF4125domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01105PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	450.189697265625	2	450.250892	898.48723	-0.074503	-3.3545E-05	-0.20869	-9.3964E-05	-0.28319	-0.00012751	450.25078612398477	28.556	0.91128	28.556	28.238	29.149	0					48	17	4	0	0	0	0.36021	1	8980	8980		54.774	6.4277	1	46089000			32407	29739	23516	23687	31598	31598					0.03392614237657199
LNSKQQTKV	9	Unmodified	_LNSKQQTKV_					0	0	0			REV__ENSG00000136487|ENST00000423893|GH2	REV__ENSG00000136487|ENST00000423893|GH2	MULTI-MSMS	A375_MHC_IP_R1	1	523.7026977539062	2	523.303655	1044.59276	-0.80537	-0.00042145	0.14159	7.4095E-05	-0.66377	-0.00034736	523.3035975391789	120.93	1.4689	120.93	120.35	121.82	0					37	28	2	0	0	0	0.70886	1	45109	45109		6.2058	0	1	21904000	+		32408	18940	23517	23688	31599	31599					0.07224530363305348
LNSLAALDL	9	Unmodified	_LNSLAALDL_					0	0	0		ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant;ENSG00000160445|ENST00000291900|ZER1	ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant	ZER1|p.L621Rfs*58|1|0.12|ENSG00000160445|chr9:128740112-128740113|-/TGCCTGCGGCGTCCTCT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	465.18231201171875	2	465.26875	928.522947	-0.15601	-7.2586E-05	-0.19639	-9.1373E-05	-0.3524	-0.00016396	465.26858275659487	40.36	0.25468	40.36	40.254	40.509	0					6	4	2	0	0	0	0.49205	1	13842	13842		21.537	0	1	609350			32409	6421	23518	23689	31600	31600					0.05582651694669494
LNSLQKYKL	9	Unmodified	_LNSLQKYKL_					0	0	0		nc|ENSG00000276547|Q9Y5G0-2|PCDHGB5;ENSG00000276547|ENST00000617380|PCDHGB5	nc|ENSG00000276547|Q9Y5G0-2|PCDHGB5	nc|ENSG00000276547|Q9Y5G0-2|PCDHGB5	MULTI-SECPEP	A375_MHC_IP_R2	2	554.2317504882812	2	553.832049	1105.64954	-0.69866	-0.00038694	0.4682	0.00025931	-0.23046	-0.00012764	553.832226340585	69.728	0.30754	70.462	70.335	70.642	0.73421					12	5	3	0	0	0	0.56537	1	26457	26457		17.113	0	1	2760600			32410	10022	23519	23690	31601	31601					0.10094577919812764
LNSNVSFNV	9	Unmodified	_LNSNVSFNV_					0	0	0			REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E;REV__nc|ENSG00000005483|Q8IZD2-6|KMT2E	REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E	MULTI-MSMS	A375_MHC_IP_R1	1	497.1553649902344	2	497.253631	992.49271	-0.47815	-0.00023776	0.24351	0.00012108	-0.23464	-0.00011668	497.25377789585053	40.076	1.5735	40.076	39.794	41.368	0					61	30	4	0	0	0	0.29981	1	14142	14142		30.637	5.2372	1	55505000	+		32411	16123;27088	23520	23691	31602	31602					-0.0038370697051277602
LNSNYKSYF	9	Unmodified	_LNSNYKSYF_					0	0	0			REV__tr|U7SM68|U7SM68_FUSNUOutermembraneproteinTolCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02098PE=3SV=1	REV__tr|U7SM68|U7SM68_FUSNUOutermembraneproteinTolCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02098PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	379.58551025390625	3	379.185468	1134.53457	0.43227	0.00016391	-0.99446	-0.00037708	-0.56218	-0.00021317	379.5191477146763	37.275	1.02	37.275	36.996	38.016	0					32	19	2	0	0	0	0.53367	1	12543	12543		12.873	2.0731	1	6408000	+		32412	28292	23521	23692	31603	31603					-0.0273115128200061
LNSPVSAFQ	9	Unmodified	_LNSPVSAFQ_					0	0	0		ENST00000541160.1_19:20451721-20519773:-|nuORF	ENST00000541160.1_19:20451721-20519773:-|nuORF	ENST00000541160.1_19:20451721-20519773:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	482.1509094238281	2	481.750724	961.486896	-0.33203	-0.00015996	0.48715	0.00023469	0.15512	7.4729E-05	481.7509807570276	99.909	0.4572	100.67	100.47	100.93	0.76278					15	8	2	0	0	0	0.36834	1	37921	37921		26.268	0.86883	1	1461900			32413	13281	23522	23693	31604	31604					0.004611945178112364
LNSSEQVFN	9	Unmodified	_LNSSEQVFN_					0	0	0			REV__tr|U7T3B8|U7T3B8_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00206PE=4SV=1	REV__tr|U7T3B8|U7T3B8_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00206PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	519.64794921875	2	519.248546	1036.48254	-0.52977	-0.00027508	-0.13823	-7.1778E-05	-0.668	-0.00034686	519.2483854487471	59.27	0.50711	59.27	59.092	59.599	0					20	9	3	0	0	0	0.51106	1	21327	21327		19.257	0	1	2408500	+		32414	28766	23523	23694	31605	31605					-0.034243146957578574
LNSSEQVFN	9	Unmodified	_LNSSEQVFN_					0	0	0			REV__tr|U7T3B8|U7T3B8_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00206PE=4SV=1	REV__tr|U7T3B8|U7T3B8_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00206PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	519.248546	1036.48254	-0.52977	-0.00027508	-0.13823	-7.1778E-05	-0.668	-0.00034686	519.2483854487471	59.27	0.50711	59.27	59.092	59.599	0	0	0	NaN	19.257	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2408500	+		32415	28766	23523	23694							-0.034243146957578574
LNSYYSWYHDY	11	Unmodified	_LNSYYSWYHDY_					0	0	0		nc|ENSG00000169919|P08236-2|GUSB;ENSG00000169919|ENST00000304895|GUSB;nc|ENSG00000169919|P08236-3|GUSB;ENST00000461622.1_1_7:65429142-65432870:-|nuORF	nc|ENSG00000169919|P08236-2|GUSB	nc|ENSG00000169919|P08236-2|GUSB	MULTI-SECPEP	A375_MHC_IP_R1	1	756.455322265625	2	755.817324	1509.62009	-0.91227	-0.00068951	-2.0022	-0.0015133	-2.9145	-0.0022028	755.8157677099388	68.22	0.50519	68.22	67.754	68.26	0					13	9	2	0	0	0	1.0007	1	24561	24561		0	0	1	2721500			32416	7452	23524	23695	31606	31606					-0.11433030886996676
LNTHLMQQYRN	11	Unmodified	_LNTHLMQQYRN_					0	0	0			REV__ENST00000580003.1_1_18:23648518-23658141:-|nuORF	REV__ENST00000580003.1_1_18:23648518-23658141:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	708.61279296875	2	709.353885	1416.69322	-0.78611	-0.00055763	-1.1946	-0.00084741	-1.9807	-0.001405	709.3539696556053	129.22	0.25327	129.46	129.26	129.52	0.23946					8	4	3	0	0	0	0.99424	1	50703	50703		2.4985	0.21571	1	2536200	+		32417	26339	23525	23696	31607	31607					0.0015381935463665286
LNTKTSYI	8	Unmodified	_LNTKTSYI_					0	0	0		RANBP17|p.T738I|1|0.33|ENSG00000204764|chr5:171205594-171205594|C/T|missense_variant	RANBP17|p.T738I|1|0.33|ENSG00000204764|chr5:171205594-171205594|C/T|missense_variant	RANBP17|p.T738I|1|0.33|ENSG00000204764|chr5:171205594-171205594|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	470.62408447265625	2	470.260925	938.507297	-0.73651	-0.00034635	-0.12662	-5.9545E-05	-0.86313	-0.0004059	470.2609991350183	44.789	0.41037	45.558	45.39	45.8	0.76909					11	7	2	0	0	0	0.60242	1	16708	16708		46.021	46.021	1	2500800			32418	15267	23526	23697	31608	31608					0.035583651776164515
LNTKTSYI	8	Unmodified	_LNTKTSYI_					0	0	0		RANBP17|p.T738I|1|0.33|ENSG00000204764|chr5:171205594-171205594|C/T|missense_variant	RANBP17|p.T738I|1|0.33|ENSG00000204764|chr5:171205594-171205594|C/T|missense_variant	RANBP17|p.T738I|1|0.33|ENSG00000204764|chr5:171205594-171205594|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	470.260925	938.507297	-0.18679	-8.7841E-05	-0.097251	-4.5733E-05	-0.28404	-0.00013357	470.26087815506065	45.677	0.50896	45.677	45.534	46.043	0	0.059563	4.9154E-06	NaN	37.974	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2122200			32419	15267	23526	23697							0.035583651776164515
LNTNWLEW	8	Unmodified	_LNTNWLEW_					0	0	0			REV__ANKRD13A|p.Y293Sfs*53|1|0.07|ENSG00000076513|chr12:110025817-110025818|-/CCAGCAAA|frameshift_variant	REV__ANKRD13A|p.Y293Sfs*53|1|0.07|ENSG00000076513|chr12:110025817-110025818|-/CCAGCAAA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	538.6632690429688	2	538.263999	1074.51345	-1.155	-0.00062168	0.014659	7.8902E-06	-1.1403	-0.00061379	538.2637874588335	71.55	0.81203	72.285	71.806	72.618	0.73421					30	15	3	0	0	0	0.76996	1	27127	27127		43.858	0	1	10586000	+		32420	15406	23527	23698	31609	31609					-0.02083116590847567
LNTRHCNKYWW	11	Unmodified	_LNTRHCNKYWW_					0	0	0			REV__ENSG00000116147|ENST00000367674|TNR	REV__ENSG00000116147|ENST00000367674|TNR	MSMS	A375_MHC_IP_R2	2	507.666748046875	3	507.578705	1519.71429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.897	1	74.634	74.134	75.134	0.73752								0	0	0	0.16224	1	28049	28049		7.0371	2.6309	1		+		32421	17941	23528	23699	31610	31610					-0.02478170545850844
LNTTAVTKG	9	Unmodified	_LNTTAVTKG_					0	0	0		nc|ENSG00000138115|P10632-2|CYP2C8;ENST00000526814.5_1_10:96796887-96827187:-|nuORF;ENSG00000138115|ENST00000371270|CYP2C8	nc|ENSG00000138115|P10632-2|CYP2C8	nc|ENSG00000138115|P10632-2|CYP2C8	MSMS	A375_MHC_IP_R2	2	452.6686096191406	2	452.758549	903.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.019	1	40.794	40.294	41.294	0.77451								0	0	0	0.15411	1	14802	14802		14.838	2.3067	1				32422	4960	23529	23700	31611	31611					0.04693481034871638
LNTVVPPQ	8	Unmodified	_LNTVVPPQ_					0	0	0		ENSG00000124783|ENST00000244763|SSR1;nc|ENSG00000124783|P43307-2|SSR1	ENSG00000124783|ENST00000244763|SSR1	ENSG00000124783|ENST00000244763|SSR1	MULTI-MSMS	A375_MHC_IP_R1	1	434.6506042480469	2	434.25036	866.486168	-0.099291	-4.3117E-05	0.028069	1.2189E-05	-0.071222	-3.0928E-05	434.250337209309	55.843	0.86468	55.843	55.482	56.347	0					37	16	3	0	0	0	0.66714	1	19942	19942		42.095	6.0504	1	6485600			32423	3928	23530	23701	31612	31612					0.04758399868762808
LNTVYTYMHWT	11	Unmodified	_LNTVYTYMHWT_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|112|3|sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|112|3|sense	MULTI-MSMS	A375_MHC_IP_R2	2	715.2333374023438	2	714.834462	1427.65437	-1.1347	-0.00081115	-0.79233	-0.00056639	-1.9271	-0.0013775	714.8338760858394	56.524	0.45881	57.274	57.051	57.51	0.75014					19	8	3	0	0	0	0.66366	1	21381	21381		18.373	6.1324	1	3177300	+		32424	26894	23531	23702	31613	31613					-0.042349059997604854
LNTVYTYMHWT	11	Unmodified	_LNTVYTYMHWT_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|112|3|sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|112|3|sense	MULTI-MATCH	A375_MHC_IP_R1	1		2	714.834462	1427.65437	-0.52838	-0.00037771	-1.0579	-0.0007562	-1.5862	-0.0011339	714.8336795292513	57.158	0.459	57.158	56.905	57.364	0	-0.058054	-0.00014393	NaN	18.373	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2916700	+		32425	26894	23531	23702							-0.042349059997604854
LNTVYTYMHWT	11	Unmodified	_LNTVYTYMHWT_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|112|3|sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|112|3|sense	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	714.834462	1427.65437	-1.1347	-0.00081115	-0.79233	-0.00056639	-1.9271	-0.0013775	714.8338760858394	56.524	0.45881	57.274	57.051	57.51	0.75014	0.058054	0.00023568	NaN	18.373	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3177300	+		32426	26894	23531	23702							-0.042349059997604854
LNTYSVTRVDS	11	Unmodified	_LNTYSVTRVDS_					0	0	0			REV__ENSG00000162733|ENST00000367921|DDR2	REV__ENSG00000162733|ENST00000367921|DDR2	MULTI-MSMS	A375_MHC_IP_R1	1	628.2194213867188	2	627.819867	1253.62518	-0.75286	-0.00047266	0.76673	0.00048137	0.013872	8.7089E-06	627.8201440174231	41.038	0.55451	41.038	40.762	41.317	0					13	10	2	0	0	0	0.59376	1	14173	14173		23.801	1.143	1	4256100	+		32427	20299	23532	23703	31614	31614					0.008512729756375848
LNTYSVTRVDS	11	Unmodified	_LNTYSVTRVDS_					0	0	0			REV__ENSG00000162733|ENST00000367921|DDR2	REV__ENSG00000162733|ENST00000367921|DDR2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	627.819867	1253.62518	-0.75286	-0.00047266	0.76673	0.00048137	0.013872	8.7089E-06	627.8201440174231	41.038	0.55451	41.038	40.762	41.317	0	-0.041218	7.1525E-05	NaN	23.801	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4256100	+		32428	20299	23532	23703							0.008512729756375848
LNVKNVPL	8	Unmodified	_LNVKNVPL_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	A375_MHC_IP_R2	2	449.1815185546875	2	448.781828	895.549102	-0.38958	-0.00017484	-0.37136	-0.00016666	-0.76094	-0.0003415	448.7818121558297	41.638	0.40834	42.412	42.198	42.607	0.77451					17	7	3	0	0	0	0.50167	1	15455	15455		50.855	2.5092	1	5014500			32429	7831	23533	23704	31615	31615					0.09714965656814911
LNVLKHIR	8	Unmodified	_LNVLKHIR_					0	0	0			REV__tr|U7T1R0|U7T1R0_FUSNUUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murDPE=3SV=1	REV__tr|U7T1R0|U7T1R0_FUSNUUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murDPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	497.17401123046875	2	496.821818	991.629084	-0.5641	-0.00028026	-0.22743	-0.00011299	-0.79153	-0.00039325	496.82172365874277	41.854	0.36003	41.854	41.622	41.982	0					10	6	2	0	0	0	0.972	1	14420	14420		0.6015	0	1	1649200	+		32430	28704	23534	23705	31616	31616					0.13293452050641008
LNVLKHIR	8	Unmodified	_LNVLKHIR_					0	0	0			REV__tr|U7T1R0|U7T1R0_FUSNUUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murDPE=3SV=1	REV__tr|U7T1R0|U7T1R0_FUSNUUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murDPE=3SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	496.821818	991.629084	-0.66853	-0.00033214	-0.29728	-0.00014769	-0.96581	-0.00047983	496.8218857903912	40.79	0.30634	41.565	41.386	41.692	0.77451	-0.14486	-6.0222E-05	NaN	0.6015	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1821200	+		32431	28704	23534	23705							0.13293452050641008
LNVLKHIRSDE	11	Unmodified	_LNVLKHIRSDE_					0	0	0			REV__tr|U7T1R0|U7T1R0_FUSNUUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murDPE=3SV=1	REV__tr|U7T1R0|U7T1R0_FUSNUUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murDPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	662.7718505859375	2	662.372601	1322.73065	-0.76088	-0.00050398	-0.69832	-0.00046255	-1.4592	-0.00096653	662.3719976059867	131.68	1.2099	131.68	131.02	132.23	0					39	23	2	0	0	0	0.73732	1	50867	50867		4.1895	2.5369	1	7490500	+		32432	28704	23535	23706	31617	31617					0.08219233891873046
LNVLVLLPLP	10	Unmodified	_LNVLVLLPLP_					0	0	0			REV__ENSG00000087301|ENST00000281741|TXNDC16	REV__ENSG00000087301|ENST00000281741|TXNDC16	MULTI-SECPEP	A375_MHC_IP_R1	1	1090.125732421875	1	1090.72344	1089.71617	-0.29462	-0.00032135	4.0407	0.0044073	3.7461	0.0040859	1091.7308570197233	124.28	0.35208	124.28	124.09	124.44	0					9	6	2	0	0	0	0.94421	1	46606	46606		0.40072	0	1	21457000	+		32433	16871	23536	23707	31618	31618					0.1748981348171128
LNVPRKTRLY	10	Unmodified	_LNVPRKTRLY_					0	0	0		ENST00000529955.5_1_11:66281964-66299243:+|nuORF;ENSG00000174483|ENST00000318312|BBS1;nc|ENSG00000174483|Q8NFJ9-2|BBS1;nc|ENSG00000174483|Q8NFJ9-3|BBS1;ENST00000527959.1_1_11:66290957-66294394:+|nuORF	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	MSMS	A375_MHC_IP_R1	1	630.4326782226562	2	630.382771	1258.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.656	1	91.656	91.156	92.156	0								0	0	0	0.15417	1	33676	33676		7.2892	3.3448	1				32434	7886	23537	23708	31619	31619					0.13196449342376582
LNVRDKLDKVG	11	Unmodified	_LNVRDKLDKVG_					0	0	0		nc|ENSG00000116525|Q9BVG3-2|TRIM62;ENSG00000116525|ENST00000291416|TRIM62	nc|ENSG00000116525|Q9BVG3-2|TRIM62	nc|ENSG00000116525|Q9BVG3-2|TRIM62	MULTI-SECPEP	A375_MHC_IP_R1	1	419.9822692871094	3	419.582221	1255.72483	0.21325	8.9475E-05	-0.48085	-0.00020176	-0.2676	-0.00011228	419.5820393905054	28.617	0.35509	28.617	28.39	28.745	0					15	6	4	0	0	0	0.94168	1	8862	8862		12.228	1.1623	1	6128800			32435	3403	23538	23709	31620	31620					0.10720135380188367
LNVRKAAHEAL	11	Unmodified	_LNVRKAAHEAL_					0	0	0		nc|ENSG00000196497|Q8TEX9-2|IPO4;ENSG00000196497|ENST00000354464|IPO4;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF;ENST00000560935.1_1_14:24652387-24652645:-|nuORF;ENST00000561379.1_1_14:24651787-24652670:-|nuORF	nc|ENSG00000196497|Q8TEX9-2|IPO4	nc|ENSG00000196497|Q8TEX9-2|IPO4	MULTI-MSMS	A375_MHC_IP_R2	2	611.7557983398438	2	611.356754	1220.69895	-0.31783	-0.00019431	-0.93004	-0.00056859	-1.2479	-0.00076289	611.8578556242028	143.16	0.55676	143.19	142.84	143.39	0.030746					16	10	2	0	0	0	0.7359	1	55990	55990		3.2813	0.28607	1	919150			32436	14837	23539	23710	31621	31621					0.09743285928607293
LNVRNVGQ	8	Unmodified	_LNVRNVGQ_					0	0	0		ENSG00000128000|ENST00000434248|ZNF780B	ENSG00000128000|ENST00000434248|ZNF780B	ENSG00000128000|ENST00000434248|ZNF780B	MULTI-MSMS	A375_MHC_IP_R2	2	450.6563720703125	2	450.256508	898.498464	-0.21222	-9.5555E-05	0.44037	0.00019828	0.22814	0.00010272	450.2564871055537	108.75	2.7534	109.5	108.4	111.15	0.74684					164	53	5	0	0	0	0.77797	1	41454	41454		2.3027	0	1	13518000			32437	4117	23540	23711	31622	31622					0.04515436331814726
LNVTKERK	8	Unmodified	_LNVTKERK_					0	0	0		ENSG00000154262|ENST00000284425|ABCA6;nc|ENSG00000154262|Q8N139-2|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	MULTI-MSMS	A375_MHC_IP_R2	2	495.6864929199219	2	494.300916	986.587279	-0.45962	-0.00022719	-0.015413	-7.6189E-06	-0.47503	-0.00023481	494.3007790580408	131.68	1.372	131.87	131.7	133.07	0.18953					66	26	4	0	0	0	0.77797	1	51836	51836		2.3027	0	1	124240000			32438	6076	23541	23712	31623	31623					0.09344851571472645
LNVVRDRG	8	Unmodified	_LNVVRDRG_					0	0	0			REV__ENSG00000065183|ENST00000349139|WDR3	REV__ENSG00000065183|ENST00000349139|WDR3	MULTI-MSMS	A375_MHC_IP_R2	2	465.1697082519531	2	464.769783	927.525013	-0.41254	-0.00019174	0.18759	8.7188E-05	-0.22495	-0.00010455	464.76979602484766	113.85	2.4366	114.56	113.72	116.16	0.70985					93	47	2	0	0	0	0.7773	1	43112	43112		4.756	0	1	17548000	+		32439	16489	23542	23713	31624	31624					0.05835125223143223
LNVVRGFKS	9	Unmodified	_LNVVRGFKS_					0	0	0			REV__ENSG00000206530|ENST00000393845|CFAP44	REV__ENSG00000206530|ENST00000393845|CFAP44	MSMS	A375_MHC_IP_R2	2	510.2029724121094	2	510.303458	1018.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.21	1	121.66	121.16	122.16	0.44488								0	0	0	0.15486	1	46332	46332		6.2058	0	1		+		32440	22597	23543	23714	31625	31625					0.08381155434108223
LNVYYIIILTW	11	Unmodified	_LNVYYIIILTW_					0	0	0		SLC6A11|p.A152T|1|0.31|ENSG00000132164|chr3:10819774-10819774|G/A|missense_variant	SLC6A11|p.A152T|1|0.31|ENSG00000132164|chr3:10819774-10819774|G/A|missense_variant	SLC6A11|p.A152T|1|0.31|ENSG00000132164|chr3:10819774-10819774|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	706.2549438476562	2	705.905214	1409.79587	-0.69353	-0.00048956	0.98968	0.00069862	0.29615	0.00020906	705.9056990544349	131.84	0.81055	132.03	131.7	132.51	0.18953					18	15	2	0	0	0	0.99424	1	51975	51975		2.4985	1.5362	1	1443100			32441	29189	23544	23715	31626	31626					0.10736835365037223
LNWKSKRKC	9	Unmodified	_LNWKSKRKC_					0	0	0			REV__ENST00000490962.1_1_3:72926686-72926866:-|nuORF	REV__ENST00000490962.1_1_3:72926686-72926866:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	388.2583923339844	3	388.22197	1161.64408	-0.51822	-0.00020118	0.15051	5.843E-05	-0.36771	-0.00014275	388.2220584726599	26.581	0.51007	27.241	27.058	27.568	0.65992					21	9	3	0	0	0	0.73141	1	9081	9081		4.1895	0.31317	1	13530000	+		32442	25395	23545	23716	31627	31627					0.06972575856366348
LNWNNRFL	8	Unmodified	_LNWNNRFL_					0	0	0		ENSG00000147168|ENST00000374202|IL2RG	ENSG00000147168|ENST00000374202|IL2RG	ENSG00000147168|ENST00000374202|IL2RG	MULTI-SECPEP	A375_MHC_IP_R1	1	539.1845703125	2	538.785433	1075.55631	-0.83481	-0.00044978	-1.4008	-0.00075472	-2.2356	-0.0012045	538.7846946854064	80.672	0.55722	80.672	80.34	80.897	0					18	10	2	0	0	0	0.90224	1	29451	29451		19.439	0	1	2635500			32443	5667	23546	23717	31628	31628					0.021556982572292327
LNWTSLLPASF	11	Unmodified	_LNWTSLLPASF_					0	0	0		nc|ENSG00000144959|Q6PIU2-3|NCEH1;ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-2|NCEH1	nc|ENSG00000144959|Q6PIU2-3|NCEH1	nc|ENSG00000144959|Q6PIU2-3|NCEH1	MSMS	A375_MHC_IP_R1	1	624.678955078125	2	624.834788	1247.65502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.907	1	84.907	84.407	85.407	0								0	0	0	0.16138	1	31109	31109		11.495	1.4208	1				32444	5530	23547	23718	31629	31629					0.04110256711601323
LNYKRIQV	8	Unmodified	_LNYKRIQV_					0	0	0			REV__LRP2|p.R4063Q|1|0.2|ENSG00000081479|chr2:169154567-169154567|C/T|missense_variant	REV__LRP2|p.R4063Q|1|0.2|ENSG00000081479|chr2:169154567-169154567|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	517.7111206054688	2	517.311284	1032.60801	-0.78303	-0.00040507	-0.062114	-3.2132E-05	-0.84515	-0.0004372	517.3114010713671	39.724	0.35635	40.499	40.269	40.626	0.77451					11	6	2	0	0	0	0.972	1	14721	14721		8.5933	0	1	2060300	+		32445	26949	23548	23719	31630	31630					0.09301441951129163
LNYLYGPTL	9	Unmodified	_LNYLYGPTL_					0	0	0			REV__ENST00000552253.1_1_12:70986014-71031175:-|nuORF	REV__ENST00000552253.1_1_12:70986014-71031175:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	526.637939453125	2	527.2844	1052.55425	-0.53407	-0.0002816	-1.0116	-0.00053338	-1.5456	-0.00081499	527.7865947833209	61.426	0.40892	61.426	61.227	61.636	0					13	7	2	0	0	0	0.55359	1	22138	22138		10.824	3.5347	1	1117200	+		32446	18415	23549	23720	31631	31631					0.030072247287534992
LNYYLPMV	8	Unmodified	_LNYYLPMV_					0	0	0		nc|ENSG00000163554|P02549-2|SPTA1;ENSG00000163554|ENST00000643759|SPTA1	nc|ENSG00000163554|P02549-2|SPTA1	nc|ENSG00000163554|P02549-2|SPTA1	MSMS	A375_MHC_IP_R2	2	506.6955261230469	2	506.762246	1011.50994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.066	1	74.804	74.304	75.304	0.73752								0	0	0	0.16876	1	28112	28112		34.187	5.7005	1				32447	6683	23550	23721	31632	31632					0.00464497310929346
LPAAGRRQ	8	Unmodified	_LPAAGRRQ_					0	0	0			REV__ENSG00000103326|ENST00000219611|CAPN15	REV__ENSG00000103326|ENST00000219611|CAPN15	MULTI-MSMS	A375_MHC_IP_R1	1	435.1591491699219	2	434.759218	867.503883	0.073438	3.1928E-05	-0.75408	-0.00032784	-0.68064	-0.00029591	434.7587193508959	117.19	0.40675	117.19	116.85	117.26	0					11	7	2	0	0	0	0.77797	1	42963	42963		2.3027	0	1	10326000	+		32448	17271	23551	23722	31633	31633					0.06483159914273529
LPAAGRRQ	8	Unmodified	_LPAAGRRQ_					0	0	0			REV__ENSG00000103326|ENST00000219611|CAPN15	REV__ENSG00000103326|ENST00000219611|CAPN15	MULTI-MSMS	A375_MHC_IP_R1	1	435.15887451171875	2	434.759218	867.503883	-0.79531	-0.00034577	0.57091	0.00024821	-0.2244	-9.7561E-05	434.7593767140311	123.26	0.85718	123.26	122.98	123.84	0					32	16	3	0	0	0	0.77717	1	45962	45962		5.2307	0	1	134550000	+		32449	17271	23551	23722	31634	31634					0.06483159914273529
LPAAGRRQ	8	Unmodified	_LPAAGRRQ_					0	0	0			REV__ENSG00000103326|ENST00000219611|CAPN15	REV__ENSG00000103326|ENST00000219611|CAPN15	MULTI-MSMS	A375_MHC_IP_R2	2	435.1589050292969	2	434.759218	867.503883	-0.11122	-4.8355E-05	-0.38392	-0.00016691	-0.49515	-0.00021527	434.75894137611976	116.63	0.50809	117.29	117.02	117.53	0.65961					14	9	2	0	0	0	0.77797	1	44150	44150		2.3027	0	1	6559700	+		32450	17271	23551	23722	31635	31635					0.06483159914273529
LPAAGRRQ	8	Unmodified	_LPAAGRRQ_					0	0	0			REV__ENSG00000103326|ENST00000219611|CAPN15	REV__ENSG00000103326|ENST00000219611|CAPN15	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	434.759218	867.503883	0.073438	3.1928E-05	-0.75408	-0.00032784	-0.68064	-0.00029591	434.7587193508959	117.19	0.40675	117.19	116.85	117.26	0	-0.052105	-0.000207	NaN	2.3027	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10326000	+		32451	17271	23551	23722							0.06483159914273529
LPAAGRRQ	8	Unmodified	_LPAAGRRQ_					0	0	0			REV__ENSG00000103326|ENST00000219611|CAPN15	REV__ENSG00000103326|ENST00000219611|CAPN15	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	434.759218	867.503883	-0.11122	-4.8355E-05	-0.38392	-0.00016691	-0.49515	-0.00021527	434.75894137611976	116.63	0.50809	117.29	117.02	117.53	0.65961	0.052105	0.00011486	NaN	2.3027	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6559700	+		32452	17271	23551	23722							0.06483159914273529
LPAALKDNF	9	Unmodified	_LPAALKDNF_					0	0	0			REV__nc|ENSG00000125388|P32298-3|GRK4	REV__nc|ENSG00000125388|P32298-3|GRK4	MULTI-MSMS	A375_MHC_IP_R1	1	494.7156982421875	2	494.776742	987.538931	-0.57349	-0.00028375	0.21261	0.00010519	-0.36088	-0.00017856	494.77684856494335	85.707	0.50884	85.707	85.412	85.921	0					20	9	3	0	0	0	0.41409	1	31364	31364		24.021	0.87215	1	2814000	+		32453	18339	23552	23723	31636	31636					0.044663579315511015
LPAARTMR	8	Unmodified	_LPAARTMR_					0	0	0		nc|ENSG00000182095|O15417-2|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	MULTI-SECPEP	A375_MHC_IP_R2	2	458.66357421875	2	458.263279	914.512005	-0.14561	-6.6728E-05	0.59058	0.00027064	0.44497	0.00020391	458.2634283362159	139.92	0.86987	139.98	139.75	140.62	0.059906					57	16	5	0	0	0	0.972	1	54762	54762		2.3027	1.5091	1	97112000			32454	14801	23553	23724	31637	31637					0.05132970839383688
LPAGLKSAT	9	Unmodified	_LPAGLKSAT_					0	0	0			REV__ENSG00000131435|ENST00000253754|PDLIM4	REV__ENSG00000131435|ENST00000253754|PDLIM4	MULTI-MSMS	A375_MHC_IP_R2	2	858.8560791015625	1	857.509094	856.501818	-0.52209	-0.00044769	-0.53362	-0.00045758	-1.0557	-0.00090528	857.5095103382816	84.759	0.30236	85.495	85.272	85.574	0.73601					10	5	2	0	0	0	0.60623	1	32163	32163		14.582	0	1	1407500	+		32455	18604	23554	23725	31638	31638					0.06782686385793113
LPAKQAEY	8	Unmodified	_LPAKQAEY_					0	0	0		ENSG00000248746|ENST00000513398|ACTN3	ENSG00000248746|ENST00000513398|ACTN3	ENSG00000248746|ENST00000513398|ACTN3	MULTI-SECPEP	A375_MHC_IP_R1	1	460.64752197265625	2	460.247818	918.481082	-0.13001	-5.9838E-05	-0.050592	-2.3285E-05	-0.1806	-8.3122E-05	460.24768644663845	56.182	0.55651	56.182	55.841	56.397	0					18	10	2	0	0	0	0.95423	1	20160	20160		18.135	1.1927	1	2257900			32456	9835	23555	23726	31639	31639					0.01858096006139931
LPAPAPPQGP	10	Unmodified	_LPAPAPPQGP_					0	0	0		ENST00000272217.6_1_1:202102688-202103180:-|nuORF	ENST00000272217.6_1_1:202102688-202103180:-|nuORF	ENST00000272217.6_1_1:202102688-202103180:-|nuORF	MSMS	A375_MHC_IP_R1	1	472.6898193359375	2	472.763635	943.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.267	1	42.267	41.767	42.767	0								0	0	0	0.14862	1	14638	14638		20.454	1.1966	1				32457	10384	23556	23727	31640	31640					0.03870088760083945
LPAQHVASTW	10	Unmodified	_LPAQHVASTW_					0	0	0		ENST00000399537.8_1_7:5347331-5347724:-|nuORF	ENST00000399537.8_1_7:5347331-5347724:-|nuORF	ENST00000399537.8_1_7:5347331-5347724:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	370.2856140136719	3	370.529458	1108.56654	0.41818	0.00015495	0.16343	6.0557E-05	0.58162	0.00021551	370.52953102260415	51.296	0.35585	51.296	51.068	51.424	0					12	6	2	0	0	0	0.94421	1	18221	18221		0.13989	0	1	3061600			32458	11541	23557	23728	31641	31641					0.01660261191796053
LPAQPPPII	9	Unmodified	_LPAQPPPII_					0	0	0			REV__nc|ENSG00000187783|A0PK05-2|TMEM72	REV__nc|ENSG00000187783|A0PK05-2|TMEM72	MULTI-MSMS	A375_MHC_IP_R2	2	473.6921691894531	2	473.292028	944.569503	-0.55999	-0.00026504	0.96156	0.0004551	0.40156	0.00019006	473.2924790824564	102.69	1.0166	103.46	103.02	104.04	0.76428					36	19	3	0	0	0	0.069885	1	38857	38857		56.541	3.8482	1	5788000	+		32459	22047	23558	23729	31642	31642					0.09500136316614771
LPAQPPPII	9	Unmodified	_LPAQPPPII_					0	0	0			REV__nc|ENSG00000187783|A0PK05-2|TMEM72	REV__nc|ENSG00000187783|A0PK05-2|TMEM72	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	473.292028	944.569503	-0.42445	-0.00020089	1.5413	0.00072948	1.1168	0.0005286	473.29288724045153	103.76	1.9839	103.76	102.81	104.79	0	0.15143	0.00031571	NaN	56.541	57	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3212500	+		32460	22047	23558	23729							0.09500136316614771
LPAQPPPII	9	Unmodified	_LPAQPPPII_					0	0	0			REV__nc|ENSG00000187783|A0PK05-2|TMEM72	REV__nc|ENSG00000187783|A0PK05-2|TMEM72	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	473.292028	944.569503	-0.55999	-0.00026504	0.96156	0.0004551	0.40156	0.00019006	473.2924790824564	102.69	1.0166	103.46	103.02	104.04	0.76428	-0.15143	-0.00023306	NaN	56.541	36	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5788000	+		32461	22047	23558	23729							0.09500136316614771
LPARHLPQR	9	Unmodified	_LPARHLPQR_					0	0	0			REV__nc|ENSG00000121716|Q9UKJ0-3|PILRB	REV__nc|ENSG00000121716|Q9UKJ0-3|PILRB	MULTI-SECPEP	A375_MHC_IP_R2	2	362.9647521972656	3	363.220958	1086.64105	-0.39777	-0.00014448	-0.026856	-9.7546E-06	-0.42462	-0.00015423	363.22096700424333	23.388	0.35243	24.019	23.777	24.129	0.63014					9	6	2	0	0	0	0.775	1	7486	7486		7.1017	0	1	2191900	+		32462	27200	23559	23730	31643	31643					0.10119068793824226
LPASVHPTLD	10	Unmodified	_LPASVHPTLD_					0	0	0		ENST00000467004.5_1_7:6838857-6844768:-|nuORF;ENST00000474507.1_1_7:5959397-5965315:+|nuORF	ENST00000467004.5_1_7:6838857-6844768:-|nuORF	ENST00000467004.5_1_7:6838857-6844768:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	524.7077026367188	2	525.284931	1048.55531	-0.72276	-0.00037965	0.22437	0.00011786	-0.49839	-0.0002618	525.2850704330652	90.839	0.71067	90.839	90.539	91.249	0					20	13	2	0	0	0	0.90853	1	33291	33291		10.824	0	1	1546900			32463	12270	23560	23731	31644	31644					0.03297439097673305
LPCMTYQPK	9	Unmodified	_LPCMTYQPK_					0	0	0		ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	MULTI-SECPEP	A375_MHC_IP_R2	2	361.30108642578125	3	360.845401	1079.51437	-0.54862	-0.00019797	0.23815	8.5934E-05	-0.31047	-0.00011203	360.8455001566188	24.492	0.81192	25.136	24.907	25.719	0.64368					20	15	2	0	0	0	0.75466	1	8020	8020		4.897	0	1	9909000			32464	9841	23561	23732	31645	31645					-0.022203615378202812
LPCMTYQPK	9	Unmodified	_LPCMTYQPK_					0	0	0		ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	MULTI-MATCH	A375_MHC_IP_R1	1		3	360.845401	1079.51437	0.16943	6.1138E-05	0.41323	0.00014911	0.58266	0.00021025	360.84546991612945	25.163	0.55945	25.163	25.002	25.562	0	0.013476	5.0265E-05	NaN	4.897	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9328300			32465	9841	23561	23732							-0.022203615378202812
LPDAGARPWL	10	Unmodified	_LPDAGARPWL_					0	0	0			REV__ENST00000472100.5_1_7:1468322-1474217:-|nuORF	REV__ENST00000472100.5_1_7:1468322-1474217:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	547.6455688476562	2	548.300916	1094.58728	-0.75418	-0.00041352	-1.0769	-0.00059048	-1.8311	-0.001004	548.300519050011	70.543	0.40456	71.277	71.048	71.453	0.73421					10	7	2	0	0	0	0.74754	1	26774	26774		22.736	7.898	1	3214500	+		32466	25130	23562	23733	31646	31646					0.04376851571464613
LPDKDRLTKF	10	Unmodified	_LPDKDRLTKF_					0	0	0		tr|U7SMC2|U7SMC2_FUSNUN-acetyl-D-galactosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01949PE=3SV=1	tr|U7SMC2|U7SMC2_FUSNUN-acetyl-D-galactosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01949PE=3SV=1	tr|U7SMC2|U7SMC2_FUSNUN-acetyl-D-galactosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01949PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	410.9522705078125	3	411.571434	1231.69247	0.16456	6.7728E-05	0.77186	0.00031768	0.93642	0.0003854	411.57139866765	33.873	0.35341	33.873	33.648	34.001	0					11	6	3	0	0	0	0.94514	1	11077	11077		2.086	0	1	1032900			32467	29527	23563	23734	31647	31647					0.08589347977203943
LPDSAEGH	8	Unmodified	_LPDSAEGH_					0	0	0		ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	A375_MHC_IP_R2	2	413.5895690917969	2	413.1905	824.366446	0.2052	8.4786E-05	-1.435	-0.00059293	-1.2298	-0.00050814	413.18995932823503	137.75	0.70978	137.83	137.56	138.27	0.083969					18	13	2	0	0	0	0.77702	1	54061	54061		5.7604	3.1829	1	1048400			32468	1838	23564	23735	31648	31648					-0.0527621347580407
LPDSNHNYA	9	Unmodified	_LPDSNHNYA_					0	0	0		ENST00000339554.7_2_9:140349714-140350919:-|nuORF;ENST00000371475.7_2_9:140349714-140350919:-|nuORF	ENST00000339554.7_2_9:140349714-140350919:-|nuORF	ENST00000339554.7_2_9:140349714-140350919:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	515.618408203125	2	515.733063	1029.45157	-0.76813	-0.00039615	-0.078035	-4.0245E-05	-0.84616	-0.00043639	515.733026621579	27.031	0.9581	27.031	26.373	27.331	0					34	18	2	0	0	0	0.72985	1	8192	8192		4.3292	0	1	4461900			32469	10847	23565	23736	31649	31649					-0.06197468009986551
LPDTLMHDL	9	Unmodified	_LPDTLMHDL_					0	0	0			REV__NFRKB|p.Q522Rfs*29|1|0.25|ENSG00000170322|chr11:129877334-129877334|A/-|frameshift_variant	REV__NFRKB|p.Q522Rfs*29|1|0.25|ENSG00000170322|chr11:129877334-129877334|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	527.6493530273438	2	527.765517	1053.51648	-0.45931	-0.00024241	-0.78371	-0.00041362	-1.243	-0.00065602	527.7647434398817	102.06	0.40482	102.06	101.95	102.35	0					9	7	2	0	0	0	0.43707	1	37485	37485		15.847	0	1	971850	+		32470	20984	23566	23737	31650	31650					-0.008136095283589384
LPEALLTV	8	Unmodified	_LPEALLTV_					0	0	0		nc|ENSG00000290699|Q9H0H9|CYP4F30P	nc|ENSG00000290699|Q9H0H9|CYP4F30P	nc|ENSG00000290699|Q9H0H9|CYP4F30P	MULTI-MSMS	A375_MHC_IP_R1	1	428.66094970703125	2	428.262936	854.51132	0.13337	5.7117E-05	-2.1349	-0.00091428	-2.0015	-0.00085716	428.261928471874	127.65	1.6237	127.65	127.42	129.04	0					74	31	3	0	0	0	0.77123	1	49473	49473		14.582	0	1	158820000			32471	14955	23567	23738	31651	31651					0.07824454671322201
LPEAPPLPGPW	11	Unmodified	_LPEAPPLPGPW_					0	0	0			REV__ENST00000528667.5_1_1:110162570-110163847:+|nuORF	REV__ENST00000528667.5_1_1:110162570-110163847:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	587.7188110351562	2	587.318774	1172.623	-0.60488	-0.00035526	0.34985	0.00020547	-0.25503	-0.00014979	587.3190043919278	129.55	0.20052	129.79	129.67	129.87	0.23946					6	3	2	0	0	0	0.72949	1	50937	50937		9.3831	2.0939	1	5491100	+		32472	25807	23568	23739	31652	31652					0.043588890284581794
LPEDFIRV	8	Unmodified	_LPEDFIRV_					0	0	0		ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	MULTI-SECPEP	A375_MHC_IP_R1	1	495.1763610839844	2	494.776742	987.538931	-0.57349	-0.00028375	0.21261	0.00010519	-0.36088	-0.00017856	494.77684856494335	85.707	0.50884	85.707	85.412	85.921	0					20	9	3	0	0	0	0.85715	1	31418	31418		29.082	8.628	1	2814000			32473	4548	23569	23740	31653	31653					0.0446635793156247
LPEDFIRV	8	Unmodified	_LPEDFIRV_					0	0	0		ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	MULTI-SECPEP	A375_MHC_IP_R2	2	495.1763610839844	2	494.776742	987.538931	-0.35565	-0.00017597	0.016327	8.0783E-06	-0.33932	-0.00016789	494.77666971628065	84.836	0.5099	85.572	85.372	85.882	0.73602					17	9	3	0	0	0	0.84294	1	32284	32284		30.637	0	1	2141800			32474	4548	23569	23740	31654	31654					0.0446635793156247
LPEFQRERE	9	Unmodified	_LPEFQRERE_					0	0	0		ENST00000554525.1_1_14:75158912-75179596:-|nuORF	ENST00000554525.1_1_14:75158912-75179596:-|nuORF	ENST00000554525.1_1_14:75158912-75179596:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	401.9556884765625	3	401.875405	1202.60439	-0.10759	-4.3237E-05	0.35749	0.00014367	0.2499	0.00010043	401.8754474116542	21.316	0.65975	21.316	20.946	21.606	0					19	12	2	0	0	0	0.67483	1	5612	5612		14.405	0.88672	1	1969200			32475	13420	23570	23741	31655	31655					0.01118727386642604
LPEFQSPPQR	10	Unmodified	_LPEFQSPPQR_					0	0	0			REV__ENSG00000166508|ENST00000303887|MCM7	REV__ENSG00000166508|ENST00000303887|MCM7	MULTI-MSMS	A375_MHC_IP_R1	1	400.6119079589844	3	400.212017	1197.61422	-0.18491	-7.4004E-05	0.26959	0.00010789	0.084676	3.3888E-05	400.2120408750857	51.156	0.66044	51.156	50.764	51.424	0					23	12	3	0	0	0	0.70329	1	18169	18169		6.1918	0.40842	1	2680300	+		32476	20682	23571	23742	31656	31656					0.02331915391982875
LPERTAEYY	9	Unmodified	_LPERTAEYY_					0	0	0		ENST00000558287.1_1_15:63632408-63634218:-|nuORF;nc|ENSG00000074410|O43570-2|CA12;ENSG00000074410|ENST00000178638|CA12	ENST00000558287.1_1_15:63632408-63634218:-|nuORF	ENST00000558287.1_1_15:63632408-63634218:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	571.1680908203125	2	571.279846	1140.54514	-0.31176	-0.0001781	-0.96388	-0.00055065	-1.2756	-0.00072875	571.7801920201389	58.126	0.45528	58.126	57.873	58.328	0					17	8	3	0	0	0	0.73008	1	20801	20801		18.135	16.291	1	1700400			32477	1584	23572	23743	31657	31657					-0.019511686275791362
LPETPPLIQT	10	Unmodified	_LPETPPLIQT_					0	0	0			REV__ENSG00000112541|ENST00000539869|PDE10A	REV__ENSG00000112541|ENST00000539869|PDE10A	MULTI-MSMS	A375_MHC_IP_R1	1	370.6135559082031	3	370.213135	1107.61758	0.30166	0.00011168	1.9	0.0007034	2.2017	0.00081509	370.213428229197	46.32	0.45188	46.32	46.043	46.495	0					18	8	3	0	0	0	0.72189	1	16278	16278		1.2148	0.14337	1	3515000	+		32478	17736	23573	23744	31658	31658					0.06807165446002728
LPETPPLIQT	10	Unmodified	_LPETPPLIQT_					0	0	0			REV__ENSG00000112541|ENST00000539869|PDE10A	REV__ENSG00000112541|ENST00000539869|PDE10A	MULTI-MSMS	A375_MHC_IP_R2	2	370.61370849609375	3	370.213135	1107.61758	0.28766	0.00010649	1.9411	0.00071863	2.2288	0.00082512	370.21349186657625	45.383	0.60612	46.148	45.846	46.453	0.76518					25	11	4	0	0	0	0.71653	1	16985	16985		2.6312	0	1	2970600	+		32479	17736	23573	23744	31659	31659					0.06807165446002728
LPEVFLSPV	9	Unmodified	_LPEVFLSPV_					0	0	0		ENST00000571365.1_1_17:4843824-4844115:+|nuORF;ENST00000576229.5_2_17:4843824-4845751:+|nuORF	ENST00000571365.1_1_17:4843824-4844115:+|nuORF	ENST00000571365.1_1_17:4843824-4844115:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1002.4011840820312	1	1000.57136	999.564084	-0.0066357	-6.6395E-06	0.97498	0.00097553	0.96834	0.00096889	1000.5720504643349	129.87	0.71045	129.87	129.65	130.36	0					35	13	5	0	0	0	0.6656	1	50052	50052		10.074	0	1	144550000			32480	13607	23574	23745	31660	31660					0.06428412734157973
LPEVFLSPV	9	Unmodified	_LPEVFLSPV_					0	0	0		ENST00000571365.1_1_17:4843824-4844115:+|nuORF;ENST00000576229.5_2_17:4843824-4845751:+|nuORF	ENST00000571365.1_1_17:4843824-4844115:+|nuORF	ENST00000571365.1_1_17:4843824-4844115:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	1000.57136	999.564084	-0.021418	-2.143E-05	0.074806	7.4849E-05	0.053388	5.3418E-05	1000.5711384989829	129.65	0.7059	129.86	129.64	130.35	0.21669	-0.003753	-0.00038657	NaN	10.074	35	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154760000			32481	13607	23574	23745							0.06428412734157973
LPEVTSVASV	10	Unmodified	_LPEVTSVASV_					0	0	0			REV__ENST00000488824.1_1_1:110282819-110282909:-|nuORF	REV__ENST00000488824.1_1_1:110282819-110282909:-|nuORF	MSMS	A375_MHC_IP_R1	1	501.18939208984375	2	501.279315	1000.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.88	1	129.88	129.38	130.38	0								0	0	0	0.14522	1	49965	49965		26.884	2.2098	1		+		32482	25360	23575	23746	31661	31661					0.043826170035458745
LPEWGQSAP	9	Unmodified	_LPEWGQSAP_					0	0	0		ENST00000496634.2_1_11:62341216-62341447:-|nuORF	ENST00000496634.2_1_11:62341216-62341447:-|nuORF	ENST00000496634.2_1_11:62341216-62341447:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	492.6682434082031	2	492.742899	983.471246	-0.46986	-0.00023152	0.98213	0.00048394	0.51227	0.00025242	492.7428869709226	78.365	0.81158	79.11	78.677	79.489	0.74474					36	15	4	0	0	0	0.62719	1	29864	29864		13.508	0.97634	1	2392600			32483	12732	23576	23747	31662	31662					-0.02115091999235119
LPFCSMKRN	9	Unmodified	_LPFCSMKRN_					0	0	0			REV__ENST00000476890.1_1_3:185813076-185826774:-|nuORF	REV__ENST00000476890.1_1_3:185813076-185826774:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6615600585938	2	548.275529	1094.53651	-0.52242	-0.00028643	0.66443	0.00036429	0.142	7.7856E-05	548.7779638266949	63.812	0.25681	63.812	63.58	63.837	0					6	4	2	0	0	0	0.69507	1	23042	23042		19.257	0	1	810630	+		32484	25190	23577	23748	31663	31663					-0.006981370693893041
LPFESVMDCCL	11	Unmodified	_LPFESVMDCCL_					0	0	0		ENST00000407916.2_1_7:55002927-55003332:+|nuORF	ENST00000407916.2_1_7:55002927-55003332:+|nuORF	ENST00000407916.2_1_7:55002927-55003332:+|nuORF	MSMS	A375_MHC_IP_R1	1	628.7677001953125	2	628.771628	1255.5287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.897	1	77.897	77.397	78.397	0								0	0	0	0.1624	1	28429	28429		6.2058	0.9089	1				32485	11612	23578	23749	31664	31664					-0.08884077171819627
LPFFNSNFHCH	11	Unmodified	_LPFFNSNFHCH_					0	0	0			REV__ENSG00000138111|ENST00000238936|MFSD13A	REV__ENSG00000138111|ENST00000238936|MFSD13A	MULTI-SECPEP	A375_MHC_IP_R2	2	455.2730407714844	3	454.873118	1361.59753	-0.72391	-0.00032929	0.34221	0.00015566	-0.3817	-0.00017362	454.8733534289455	53.576	0.46122	54.327	54.147	54.609	0.75105					16	8	3	0	0	0	1.001	1	20253	20253		1.4551	0.94916	1	3693700	+		32486	19065	23579	23750	31665	31665					-0.06880908765583627
LPFHLPLL	8	Unmodified	_LPFHLPLL_					0	0	0		ENST00000480958.1_1_17:41902775-41908980:-|nuORF	ENST00000480958.1_1_17:41902775-41908980:-|nuORF	ENST00000480958.1_1_17:41902775-41908980:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	475.6964416503906	2	475.297114	948.579674	-0.41974	-0.0001995	-0.90569	-0.00043047	-1.3254	-0.00062997	475.29663349767907	128.46	0.40433	128.46	128.23	128.63	0					13	7	2	0	0	0	0.2379	1	49335	49335		64.081	22.264	1	10145000			32487	12506	23580	23751	31666	31666					0.10332744041863862
LPFHLPLL	8	Unmodified	_LPFHLPLL_					0	0	0		ENST00000480958.1_1_17:41902775-41908980:-|nuORF	ENST00000480958.1_1_17:41902775-41908980:-|nuORF	ENST00000480958.1_1_17:41902775-41908980:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	475.6972961425781	2	475.297114	948.579674	-0.60656	-0.0002883	0.23925	0.00011372	-0.36731	-0.00017458	475.29713019431466	128.08	0.40683	128.35	128.17	128.58	0.26593					13	7	2	0	0	0	0.2379	1	50293	50293		64.081	11.747	1	9027100			32488	12506	23580	23751	31667	31667					0.10332744041863862
LPFHSEPA	8	Unmodified	_LPFHSEPA_					0	0	0		nc|ENSG00000152217|Q9Y6X0-2|SETBP1	nc|ENSG00000152217|Q9Y6X0-2|SETBP1	nc|ENSG00000152217|Q9Y6X0-2|SETBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	896.664794921875	1	897.446494	896.439217	-0.60289	-0.00054106	2.7246	0.0024452	2.1217	0.0019041	897.4494092507374	121.97	1.0162	121.97	121.31	122.33	0					28	19	2	0	0	0	0.94479	1	45310	45310		13.508	0	1	52898000			32489	14683	23581	23752	31668	31668					-0.013144596823849497
LPFKWFDY	8	Unmodified	_LPFKWFDY_					0	0	0		ENSG00000011258|ENST00000586178|MBTD1;nc|ENSG00000011258|Q05BQ5-3|MBTD1	ENSG00000011258|ENST00000586178|MBTD1	ENSG00000011258|ENST00000586178|MBTD1	MSMS	A375_MHC_IP_R2	2	558.1759033203125	2	558.28166	1114.54877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.68	1	132.84	132.34	133.34	0.16487								0	0	0	0.16876	1	52191	52191		10.183	2.2732	1				32490	995	23582	23753	31669	31669					-0.003924540630578122
LPFLLLPLA	9	Unmodified	_LPFLLLPLA_					0	0	0		ENSG00000235173|ENST00000347708|HGH1;ENST00000524697.1_8:145438664-145439010:+|nuORF	ENSG00000235173|ENST00000347708|HGH1	ENSG00000235173|ENST00000347708|HGH1	MSMS	A375_MHC_IP_R2	2	498.82012939453125	2	498.828246	995.64194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.276	1	100.04	99.536	100.54	0.75977								0	0	0	0.15486	1	37660	37660		2.3027	0	1				32491	9745	23583	23754	31670	31670					0.1439447039017523
LPFQDRRRV	9	Unmodified	_LPFQDRRRV_					0	0	0			REV__nc|ENSG00000072195|Q15772-1|SPEG	REV__nc|ENSG00000072195|Q15772-1|SPEG	MULTI-MSMS	A375_MHC_IP_R2	2	396.2961730957031	3	396.231634	1185.67307	-0.53048	-0.00021019	-0.29585	-0.00011722	-0.82633	-0.00032742	396.23144804167055	26.275	1.3248	26.935	26.347	27.671	0.65992					55	24	3	0	0	0	0.64971	1	8952	8952		11.495	2.5185	1	16886000	+		32492	16601	23584	23755	31671	31671					0.08766436476980743
LPFRGPGRSP	10	Unmodified	_LPFRGPGRSP_					0	0	0		ENST00000536905.5_1_12:118541497-118541767:-|nuORF	ENST00000536905.5_1_12:118541497-118541767:-|nuORF	ENST00000536905.5_1_12:118541497-118541767:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	542.706298828125	2	542.306532	1082.59851	-0.40408	-0.00021913	-0.81999	-0.00044468	-1.2241	-0.00066382	542.3061558876234	45.71	0.55654	45.71	45.384	45.941	0					14	9	2	0	0	0	0.89369	1	16027	16027		9.544	0	1	2533600			32493	13244	23585	23756	31672	31672					0.06051673665592716
LPFRKDLEKYK	11	Unmodified	_LPFRKDLEKYK_					0	0	0		ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	MULTI-MSMS	A375_MHC_IP_R1	1	480.34765625	3	479.613522	1435.81874	-0.31705	-0.00015206	-0.39934	-0.00019153	-0.71639	-0.00034359	479.6133203785359	78.148	0.45691	78.148	77.895	78.352	0					23	8	4	0	0	0	0.73502	1	28527	28527		4.1166	0.27072	1	4535100			32494	5003	23586	23757	31673	31673					0.11825854482503928
LPFRKDLEKYK	11	Unmodified	_LPFRKDLEKYK_					0	0	0		ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	MULTI-MSMS	A375_MHC_IP_R2	2	480.34771728515625	3	479.613522	1435.81874	-0.56256	-0.00026981	-0.24173	-0.00011594	-0.80429	-0.00038575	479.6133497514107	77.264	0.50816	78.007	77.757	78.265	0.74293					27	9	4	0	0	0	0.73239	1	29323	29323		6.6235	3.0308	1	3900100			32495	5003	23586	23757	31674	31674					0.11825854482503928
LPFSPRTLIPI	11	Unmodified	_LPFSPRTLIPI_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	A375_MHC_IP_R1	1	627.7842407226562	2	627.384448	1252.75434	-0.38667	-0.00024259	-0.15822	-9.9264E-05	-0.54489	-0.00034185	627.3841011720779	117.35	0.35524	117.35	117.26	117.61	0					10	6	2	0	0	0	0.33744	1	43172	43172		43.858	7.3521	1	10880000	+		32496	21369	23587	23758	31675	31675					0.13807699396375028
LPFTAGGFIY	10	Unmodified	_LPFTAGGFIY_					0	0	0		ENSG00000112473|ENST00000374677|SLC39A7	ENSG00000112473|ENST00000374677|SLC39A7	ENSG00000112473|ENST00000374677|SLC39A7	MULTI-SECPEP	A375_MHC_IP_R2	2	362.9381408691406	3	362.527054	1084.55933	0.053678	1.946E-05	-1.0511	-0.00038106	-0.99745	-0.0003616	362.5263880296376	44.037	0.50483	44.806	44.48	44.985	0.7691					16	9	3	0	0	0	0.92389	1	16354	16354		1.9064	0	1	1216100			32497	3088	23588	23759	31676	31676					0.020435285913890766
LPFTLCSRTF	10	Unmodified	_LPFTLCSRTF_					0	0	0			REV__ENST00000287996.7_1_9:95396675-95396741:-|nuORF	REV__ENST00000287996.7_1_9:95396675-95396741:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	396.256103515625	3	395.542598	1183.60597	-0.22672	-8.9678E-05	3.5896	0.0014198	3.3629	0.0013302	395.87931939149956	39.344	0.7646	40.118	39.76	40.524	0.77451					32	14	3	0	0	0	0.90513	1	14666	14666		14.957	5.9809	1	1904800	+		32498	23343	23589	23760	31677	31677					0.021506451510049374
LPFTVHLVGY	10	Unmodified	_LPFTVHLVGY_					0	0	0			REV__nc|ENSG00000179873|P59045-3|NLRP11	REV__nc|ENSG00000179873|P59045-3|NLRP11	MSMS	A375_MHC_IP_R1	1	382.5926208496094	3	382.54997	1144.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.922	1	27.922	27.422	28.422	0								0	0	0	0.15105	1	8536	8536		13.615	4.6386	1		+		32499	21584	23590	23761	31678	31678					0.061551928911057985
LPFYFEEY	8	Unmodified	_LPFYFEEY_					0	0	0			REV__nc|ENSG00000169894|Q02505-5|MUC3A	REV__nc|ENSG00000169894|Q02505-5|MUC3A	MULTI-SECPEP	A375_MHC_IP_R1	1	553.7061767578125	2	554.255308	1106.49606	-0.55882	-0.00030973	-0.91418	-0.00050669	-1.473	-0.00081642	554.7561126473024	59.297	0.4056	59.297	59.143	59.548	0					11	7	2	0	0	0	0.93416	1	21340	21340		14.582	0	1	622350	+		32500	20950	23591	23762	31679	31679					-0.05292456916504307
LPGAKIPK	8	Unmodified	_LPGAKIPK_					0	0	0		nc|ENSG00000112701|Q9GZR1-2|SENP6;ENSG00000112701|ENST00000447266|SENP6	nc|ENSG00000112701|Q9GZR1-2|SENP6	nc|ENSG00000112701|Q9GZR1-2|SENP6	MULTI-SECPEP	A375_MHC_IP_R1	1	824.1804809570312	1	823.54	822.532724	-0.33707	-0.00027759	1.3884	0.0011434	1.0513	0.00086582	823.5413344056614	125.58	0.40254	125.58	125.45	125.85	0					9	7	2	0	0	0	0.972	1	47867	47867		5.7604	0	1	54832000			32501	3105	23592	23763	31680	31680					0.11435884490708759
LPGDVESHLPQ	11	Unmodified	_LPGDVESHLPQ_					0	0	0		nc|ENSG00000127124|Q5T1R4-2|HIVEP3;ENSG00000127124|ENST00000372583|HIVEP3	nc|ENSG00000127124|Q5T1R4-2|HIVEP3	nc|ENSG00000127124|Q5T1R4-2|HIVEP3	MULTI-SECPEP	A375_MHC_IP_R2	2	397.2755126953125	3	397.87166	1190.59315	-0.040202	-1.5995E-05	0.38254	0.0001522	0.34234	0.00013621	397.8717079978306	27.297	0.60947	27.976	27.792	28.401	0.67857					15	11	2	0	0	0	0.99331	1	9242	9242		2.4348	1.325	1	1577000			32502	4077	23593	23764	31681	31681					0.005479052925011274
LPGGPEARG	9	Unmodified	_LPGGPEARG_					0	0	0		ENSG00000161940|ENST00000293805|BCL6B	ENSG00000161940|ENST00000293805|BCL6B	ENSG00000161940|ENST00000293805|BCL6B	MSMS	A375_MHC_IP_R1	1	427.1450500488281	2	427.229959	852.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.216	1	87.216	86.716	87.716	0								0	0	0	0.15131	1	31999	31999		19.439	1.304	1				32503	6495	23594	23765	31682	31682					0.013240585491416823
LPGGRFLL	8	Unmodified	_LPGGRFLL_					0	0	0			REV__ENST00000321725.10_1_3:52550585-52551339:+|nuORF	REV__ENST00000321725.10_1_3:52550585-52551339:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	436.9991149902344	2	436.771263	871.527973	-0.23769	-0.00010382	0.5048	0.00022048	0.26711	0.00011667	436.77124207809265	78.517	0.45613	79.261	79.033	79.489	0.74474					11	8	2	0	0	0	0.972	1	29861	29861		11.114	0	1	1199500	+		32504	23573	23595	23766	31683	31683					0.08707000347953908
LPGGWGNF	8	Unmodified	_LPGGWGNF_					0	0	0		ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;RYR2|p.V3402Sfs*10|1|0.5|ENSG00000198626|chr1:237709538-237709539|-/A|frameshift_variant	ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-MSMS	A375_MHC_IP_R2	2	424.60821533203125	2	424.208495	846.402438	-0.55429	-0.00023513	0.38982	0.00016537	-0.16447	-6.9768E-05	424.20873070018797	59.153	1.1137	59.9	59.54	60.653	0.74714					32	21	2	0	0	0	0.7758	1	22364	22364		10.183	10.183	1	3104500			32505	9292	23596	23767	31684	31684					-0.026907115082849486
LPGHCCLWS	9	Unmodified	_LPGHCCLWS_					0	0	0			REV__ENST00000407418.7_1_22:39260590-39260776:-|nuORF	REV__ENST00000407418.7_1_22:39260590-39260776:-|nuORF	MSMS	A375_MHC_IP_R2	2	508.1839294433594	2	508.228048	1014.44154	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.542	1	80.287	79.787	80.787	0.74474								0	0	0	0.15486	1	30185	30185		13.508	0.97634	1		+		32506	24451	23597	23768	31685	31685					-0.06510070540571178
LPGITNDL	8	Unmodified	_LPGITNDL_					0	0	0		nc|ENSG00000185596|C4AMC7|WASH3P;ENST00000557932.5_1_15:102513813-102516466:+|nuORF	nc|ENSG00000185596|C4AMC7|WASH3P	nc|ENSG00000185596|C4AMC7|WASH3P	MULTI-MSMS	A375_MHC_IP_R2	2	422.15155029296875	2	421.734543	841.454533	-0.26149	-0.00011028	1.9996	0.00084329	1.7381	0.00073301	421.73447808053317	66.338	0.45985	67.074	66.882	67.342	0.73631					12	8	2	0	0	0	0.73946	1	25129	25129		23.148	0	1	667350			32507	14812	23598	23769	31686	31686					0.027464071148074254
LPGITNDL	8	Unmodified	_LPGITNDL_					0	0	0		nc|ENSG00000185596|C4AMC7|WASH3P;ENST00000557932.5_1_15:102513813-102516466:+|nuORF	nc|ENSG00000185596|C4AMC7|WASH3P	nc|ENSG00000185596|C4AMC7|WASH3P	MULTI-MATCH	A375_MHC_IP_R1	1		2	421.734543	841.454533	-0.28022	-0.00011818	2.9675	0.0012515	2.6872	0.0011333	421.73478488481123	67.205	0.46037	67.205	66.938	67.399	0	0.06541	0.00036487	NaN	23.148	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	352010			32508	14812	23598	23769							0.027464071148074254
LPGLHPTCP	9	Unmodified	_LPGLHPTCP_					0	0	0			REV__ENST00000262366.7_1_16:4388800-4388938:+|nuORF	REV__ENST00000262366.7_1_16:4388800-4388938:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	467.1571350097656	2	467.744388	933.474223	-0.66583	-0.00031144	1.8467	0.00086377	1.1808	0.00055233	467.7454060682045	127.65	0.25343	127.91	127.77	128.02	0.26592					9	4	3	0	0	0	0.20094	1	50105	50105		44.407	11.953	1	6657200	+		32509	23204	23599	23770	31687	31687					0.004824598539244107
LPGLREQKW	9	Unmodified	_LPGLREQKW_					0	0	0			REV__nc|ENSG00000139890|Q8IYK8-2|REM2	REV__nc|ENSG00000139890|Q8IYK8-2|REM2	MULTI-SECPEP	A375_MHC_IP_R2	2	376.2732238769531	3	376.217102	1125.62948	0.11975	4.5054E-05	0.2897	0.00010899	0.40946	0.00015404	376.5516065930629	50.718	0.35481	51.472	51.209	51.564	0.75406					14	6	3	0	0	0	0.78353	1	19058	19058		6.1918	0.78914	1	1738100	+		32510	27258	23600	23771	31688	31688					0.0716882697984147
LPGPHPPQSP	10	Unmodified	_LPGPHPPQSP_					0	0	0		ENST00000357503.2_1_9:140174524-140174761:+|nuORF	ENST00000357503.2_1_9:140174524-140174761:+|nuORF	ENST00000357503.2_1_9:140174524-140174761:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	514.172607421875	2	513.771991	1025.52943	-0.49715	-0.00025542	0.4209	0.00021625	-0.076249	-3.9175E-05	513.7721048960022	60.285	0.86608	60.285	59.803	60.669	0					47	16	4	0	0	0	0.76414	1	21632	21632		14.838	0	1	35040000			32511	10984	23601	23772	31689	31689					0.017685896460534423
LPGQGEGRAPS	11	Unmodified	_LPGQGEGRAPS_					0	0	0			REV__ENST00000322834.7_2_19:58920197-58921338:+|nuORF	REV__ENST00000322834.7_2_19:58920197-58921338:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	534.1740112304688	2	534.775262	1067.53597	-0.72873	-0.00038971	-0.092329	-4.9375E-05	-0.82106	-0.00043908	535.2757149030153	52.439	0.35474	52.439	52.237	52.592	0					12	6	3	0	0	0	0.9836	1	18637	18637		7.609	1.8771	1	1126100	+		32512	23473	23602	23773	31690	31690					0.004904828067537892
LPHARSPSPW	10	Unmodified	_LPHARSPSPW_					0	0	0		ENST00000377291.2_1_5:175110069-175110369:+|nuORF	ENST00000377291.2_1_5:175110069-175110369:+|nuORF	ENST00000377291.2_1_5:175110069-175110369:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	574.703857421875	2	574.30399	1146.59343	-0.59365	-0.00034093	0.31316	0.00017985	-0.28049	-0.00016109	574.3041560916516	59.78	1.3691	60.527	59.742	61.111	0.74714					46	26	2	0	0	0	0.70651	1	22715	22715		9.3831	9.3831	1	3733300			32513	11294	23603	23774	31691	31691					0.025993698030106316
LPHESLERI	9	Unmodified	_LPHESLERI_					0	0	0		ENST00000446564.5_1_7:43688212-43769049:-|nuORF	ENST00000446564.5_1_7:43688212-43769049:-|nuORF	ENST00000446564.5_1_7:43688212-43769049:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	365.6047668457031	3	365.204862	1092.59276	-0.26956	-9.8444E-05	0.18952	6.9215E-05	-0.080035	-2.9229E-05	365.20489358809255	58.282	0.35835	59.031	58.929	59.287	0.74894					15	6	3	0	0	0	0.67221	1	22064	22064		5.2969	0	1	2846900			32514	12036	23604	23775	31692	31692					0.0501653036328662
LPHGMEGMGP	10	Unmodified	_LPHGMEGMGP_					0	0	0		nc|ENSG00000105953|Q02218-2|OGDH;ENSG00000105953|ENST00000222673|OGDH;nc|ENSG00000197444|Q9ULD0-3|OGDHL;nc|ENSG00000197444|Q9ULD0-2|OGDHL;ENSG00000197444|ENST00000374103|OGDHL	nc|ENSG00000105953|Q02218-2|OGDH	nc|ENSG00000105953|Q02218-2|OGDH	MULTI-MSMS	A375_MHC_IP_R1	1	513.1581420898438	2	513.230787	1024.44702	-0.30827	-0.00015821	-0.69132	-0.00035481	-0.99959	-0.00051302	513.2304197079771	71.599	0.4543	71.599	71.211	71.665	0					12	8	2	0	0	0	0.65248	1	25988	25988		16.942	4.4107	1	2164900			32515	2652	23605	23776	31693	31693					-0.06422391748753853
LPHGQRKRRRW	11	Unmodified	_LPHGQRKRRRW_					0	0	0			REV__ENST00000580483.5_1_18:10525983-10526091:+|nuORF	REV__ENST00000580483.5_1_18:10525983-10526091:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	497.6957702636719	3	497.295632	1488.86507	-0.73869	-0.00036735	0.072202	3.5906E-05	-0.66649	-0.00033144	497.29550017606005	143.17	0.99771	143.17	142.59	143.58	0					53	19	5	0	0	0	0.73924	1	54851	54851		0.094841	0	1	10328000	+		32516	26341	23606	23777	31694	31694					0.14018776947818878
LPHGQRKRRRW	11	Unmodified	_LPHGQRKRRRW_					0	0	0			REV__ENST00000580483.5_1_18:10525983-10526091:+|nuORF	REV__ENST00000580483.5_1_18:10525983-10526091:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	497.295632	1488.86507	-0.73869	-0.00036735	0.072202	3.5906E-05	-0.66649	-0.00033144	497.29550017606005	143.17	0.99771	143.17	142.59	143.58	0	-0.020221	0.00028671	NaN	0.094841	53	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10328000	+		32517	26341	23606	23777							0.14018776947818878
LPHGQRKRRRW	11	Unmodified	_LPHGQRKRRRW_					0	0	0			REV__ENST00000580483.5_1_18:10525983-10526091:+|nuORF	REV__ENST00000580483.5_1_18:10525983-10526091:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	497.295632	1488.86507	-0.30351	-0.00015093	-0.30076	-0.00014957	-0.60427	-0.0003005	497.29532660950065	143.18	0.81049	143.21	142.64	143.45	0.030731	0.020221	-0.00026971	NaN	0.094841	43	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8720000	+		32518	26341	23606	23777							0.14018776947818878
LPHGRTLWEV	10	Unmodified	_LPHGRTLWEV_					0	0	0			REV__ENST00000469269.1_1_20:36758623-36761344:-|nuORF	REV__ENST00000469269.1_1_20:36758623-36761344:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	403.6243896484375	3	403.224257	1206.65094	-0.21739	-8.7656E-05	0.50862	0.00020509	0.29123	0.00011743	403.2244251380704	39.198	0.45832	39.198	38.983	39.441	0					19	8	3	0	0	0	0.91796	1	13374	13374		17.049	3.4337	1	7265800	+		32519	25093	23607	23778	31695	31695					0.05588212008547089
LPHKKPLNR	9	Unmodified	_LPHKKPLNR_					0	0	0			REV__ENST00000569782.2_1_16:31520289-31520549:+|nuORF	REV__ENST00000569782.2_1_16:31520289-31520549:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	368.27703857421875	3	368.232975	1101.6771	0.24129	8.885E-05	1.1518	0.00042414	1.3931	0.00051299	368.2327953966309	24.95	0.35513	24.95	24.698	25.053	0					11	6	2	0	0	0	0.72761	1	7087	7087		4.5289	1.7937	1	1680200	+		32520	26274	23608	23779	31696	31696					0.1303252597069786
LPHRSRQPV	9	Unmodified	_LPHRSRQPV_					0	0	0			REV__ENSG00000176542|ENST00000316407|USF3	REV__ENSG00000176542|ENST00000316407|USF3	MULTI-MSMS	A375_MHC_IP_R2	2	1091.027587890625	1	1089.62759	1088.62031	0.13961	0.00015212	0.2459	0.00026794	0.38551	0.00042006	1089.6261641480326	125.89	0.86029	126.18	125.72	126.58	0.2951					43	16	4	0	0	0	0.68216	1	49028	49028		8.5933	0.68312	1	26093000	+		32521	21410	23609	23780	31697	31697					0.07954478414194455
LPIFIDSYI	9	Unmodified	_LPIFIDSYI_					0	0	0		tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1	tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1	tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	541.2018432617188	2	540.802426	1079.5903	-0.86737	-0.00046907	-0.25714	-0.00013906	-1.1245	-0.00060813	540.8022466971898	131.96	0.20126	131.96	131.83	132.03	0					8	3	3	0	0	0	0.56939	1	50904	50904		19.439	0	1	7378800			32522	30025	23610	23781	31698	31698					0.05368681905588346
LPIFVPEIK	9	Unmodified	_LPIFVPEIK_					0	0	0			REV__ENSG00000134744|ENST00000257177|TUT4	REV__ENSG00000134744|ENST00000257177|TUT4	MSMS	A375_MHC_IP_R1	1	352.59759521484375	3	352.554833	1054.64267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.781	1	25.781	25.281	26.281	0								0	0	0	0.15486	1	7584	7584		7.1017	0.90987	1		+		32523	18796	23611	23782	31699	31699					0.11753265039214966
LPILVSPQG	9	Unmodified	_LPILVSPQG_					0	0	0		ENST00000270460.10_2_19:56208640-56208850:+|nuORF	ENST00000270460.10_2_19:56208640-56208850:+|nuORF	ENST00000270460.10_2_19:56208640-56208850:+|nuORF	MSMS	A375_MHC_IP_R1	1	462.3480529785156	2	462.28166	922.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.33	1	141.33	140.83	141.83	0								0	0	0	0.15486	1	54252	54252		4.3292	0	1				32524	10378	23612	23783	31700	31700					0.08439545936948889
LPIPPAPPC	9	Unmodified	_LPIPPAPPC_					0	0	0			REV__NKD1|p.Q271Rfs*78|1|0.28|ENSG00000140807|chr16:50632388-50632389|-/CACGT|frameshift_variant	REV__NKD1|p.Q271Rfs*78|1|0.28|ENSG00000140807|chr16:50632388-50632389|-/CACGT|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	904.4110107421875	1	904.496087	903.48881	-0.33406	-0.00030216	-0.32672	-0.00029552	-0.66078	-0.00059767	904.495846159745	78.559	2.5891	79.303	78.574	81.163	0.74474					88	50	3	0	0	0	0.60623	1	29656	29656		14.582	0	1	9629800	+		32525	27607	23613	23784	31701	31701					0.03320532002044274
LPIPRFPQP	9	Unmodified	_LPIPRFPQP_					0	0	0		LAT|p.S84F|1|0.21|ENSG00000213658|chr16:28986387-28986387|C/T|missense_variant	LAT|p.S84F|1|0.21|ENSG00000213658|chr16:28986387-28986387|C/T|missense_variant	LAT|p.S84F|1|0.21|ENSG00000213658|chr16:28986387-28986387|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	1064.0068359375	1	1064.62513	1063.61785	0.083815	8.9231E-05	-4.4613	-0.0047496	-4.3775	-0.0046604	1065.6234738422315	123.78	0.65953	124.11	123.84	124.5	0.32968					16	12	2	0	0	0	0.75466	1	47864	47864		7.9102	0.62092	1	39436000			32526	14284	23614	23785	31702	31702					0.08858629956512232
LPISQDHSSPP	11	Unmodified	_LPISQDHSSPP_					0	0	0			REV__nc|ENSG00000172728|Q6P4F1-3|FUT10	REV__nc|ENSG00000172728|Q6P4F1-3|FUT10	MULTI-SECPEP	A375_MHC_IP_R2	2	588.7078857421875	2	589.296027	1176.5775	-0.63178	-0.00037231	-2.4555	-0.001447	-3.0873	-0.0018193	589.2950671471208	106.71	0.30502	107.47	107.34	107.65	0.75977					8	5	2	0	0	0	0.98416	1	40329	40329		14.838	12.994	1	771520	+		32527	27362	23615	23786	31703	31703					-0.00372381224565288
LPIVHCYSF	9	Unmodified	_LPIVHCYSF_					0	0	0		ENSG00000126814|ENST00000261249|TRMT5	ENSG00000126814|ENST00000261249|TRMT5	ENSG00000126814|ENST00000261249|TRMT5	MULTI-SECPEP	A375_MHC_IP_R2	2	360.6291809082031	3	360.184522	1077.53174	-0.23482	-8.4579E-05	1.801	0.00064869	1.5662	0.00056411	360.1852387503893	31.149	0.20469	31.867	31.77	31.974	0.71857					5	3	2	0	0	0	0.77244	1	11011	11011		1.1933	0.32897	1	638280			32528	4060	23616	23787	31704	31704					-0.003926979405150632
LPKELLGRKA	10	Unmodified	_LPKELLGRKA_					0	0	0			REV__ENSG00000072840|ENST00000264956|EVC	REV__ENSG00000072840|ENST00000264956|EVC	MULTI-SECPEP	A375_MHC_IP_R1	1	374.929443359375	3	375.576519	1123.70773	0.79252	0.00029765	-0.55943	-0.00021011	0.23309	8.7545E-05	375.5762127187304	45.231	0.6067	45.231	44.827	45.434	0					17	11	2	0	0	0	0.92351	1	15844	15844		1.7423	1.1154	1	1119800	+		32529	16613	23617	23788	31705	31705					0.15082259565087952
LPKELLGRKA	10	Unmodified	_LPKELLGRKA_					0	0	0			REV__ENSG00000072840|ENST00000264956|EVC	REV__ENSG00000072840|ENST00000264956|EVC	MULTI-SECPEP	A375_MHC_IP_R2	2	374.9294738769531	3	375.576519	1123.70773	0.35504	0.00013334	-0.45882	-0.00017232	-0.10378	-3.8977E-05	375.57645137436	44.336	0.70864	45.105	44.631	45.34	0.7691					20	13	2	0	0	0	0.92351	1	16557	16557		1.7423	1.1154	1	873460	+		32530	16613	23617	23788	31706	31706					0.15082259565087952
LPKGNALI	8	Unmodified	_LPKGNALI_					0	0	0			REV__ENSG00000187889|ENST00000343433|FYB2	REV__ENSG00000187889|ENST00000343433|FYB2	MSMS	A375_MHC_IP_R1	1	413.2992248535156	2	413.263271	824.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.805	1	60.805	60.305	61.305	0								0	0	0	0.16876	1	21897	21897		5.7604	0.52976	1		+		32531	22056	23618	23789	31707	31707					0.09271294111044881
LPKGYSFNKA	10	Unmodified	_LPKGYSFNKA_					0	0	0			REV__ENSG00000180917|ENST00000434935|CMTR2	REV__ENSG00000180917|ENST00000434935|CMTR2	MULTI-SECPEP	A375_MHC_IP_R1	1	562.4931640625	2	562.808574	1123.60259	-0.52582	-0.00029594	-1.7346	-0.00097626	-2.2604	-0.0012722	562.8073840917864	76.767	0.71263	76.767	76.471	77.184	0					17	13	2	0	0	0	0.91643	1	27981	27981		9.3831	3.6513	1	997260	+		32532	21628	23619	23790	31708	31708					0.04573718368669688
LPKKCPVP	8	Unmodified	_LPKKCPVP_					0	0	0		MCM8|p.T262K|1|0.07|ENSG00000125885|chr20:5958722-5958722|C/A|missense_variant	MCM8|p.T262K|1|0.07|ENSG00000125885|chr20:5958722-5958722|C/A|missense_variant	MCM8|p.T262K|1|0.07|ENSG00000125885|chr20:5958722-5958722|C/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	441.16607666015625	2	441.267499	880.520445	-0.29261	-0.00012912	1.7127	0.00075575	1.4201	0.00062663	441.2684327804603	84.465	0.96365	84.465	83.837	84.8	0					23	18	2	0	0	0	0.77686	1	30924	30924		6.3541	6.3541	1	1209400			32533	14361	23620	23791	31709	31709					0.07540524756007017
LPKKGARA	8	Unmodified	_LPKKGARA_					0	0	0			REV__nc|ENSG00000188554|Q14596-2|NBR1	REV__nc|ENSG00000188554|Q14596-2|NBR1	MULTI-MSMS	A375_MHC_IP_R1	1	421.1742248535156	2	420.774337	839.534121	0.35914	0.00015112	-0.52857	-0.00022241	-0.16943	-7.1293E-05	420.77418616018076	49.63	0.35526	49.63	49.49	49.845	0					9	6	2	0	0	0	0.7779	1	17583	17583		2.5775	0	1	1266400	+		32534	22096	23621	23792	31710	31710					0.10793518579453121
LPKKHRRQIKR	11	Unmodified	_LPKKHRRQIKR_					0	0	0			REV__ENSG00000114656|ENST00000645291|CFAP92	REV__ENSG00000114656|ENST00000645291|CFAP92	MSMS	A375_MHC_IP_R2	2	730.4268798828125	2	730.47586	1458.93717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.46	1	98.216	97.716	98.716	0.75586								0	0	0	0.16358	1	36991	36991		0.35063	0.35063	1		+		32535	17837	23622	23793	31711	31711					0.22605691301532715
LPKLEVKKT	9	Unmodified	_LPKLEVKKT_					0	0	0		tr|U7SKG3|U7SKG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01983PE=4SV=1	tr|U7SKG3|U7SKG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01983PE=4SV=1	tr|U7SKG3|U7SKG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01983PE=4SV=1	MSMS	A375_MHC_IP_R1	1	352.6207580566406	3	352.56562	1054.67503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.587	1	31.587	31.087	32.087	0								0	0	0	0.15486	1	10125	10125		8.1555	0.54658	1				32536	29471	23623	23794	31712	31712					0.14988052442231492
LPKLKLRKLEL	11	Unmodified	_LPKLKLRKLEL_					0	0	0		nc|ENSG00000248546|O43423|ANP32CP	nc|ENSG00000248546|O43423|ANP32CP	nc|ENSG00000248546|O43423|ANP32CP	MSMS	A375_MHC_IP_R1	1	676.0803833007812	2	675.963397	1349.91224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.268	1	95.268	94.768	95.768	0								0	0	0	0.16353	1	35015	35015		0.35063	0	1				32537	14920	23624	23795	31713	31713					0.2512819865560232
LPKQDRRW	8	Unmodified	_LPKQDRRW_					0	0	0			REV__ENST00000464954.1_1_1:167691199-167735064:+|nuORF	REV__ENST00000464954.1_1_1:167691199-167735064:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	366.97088623046875	3	366.87708	1097.60941	-0.42543	-0.00015608	0.11425	4.1917E-05	-0.31117	-0.00011416	367.21135470170384	36.795	0.50803	37.566	37.308	37.816	0.7709					13	9	2	0	0	0	0.95423	1	13393	13393		13.906	3.1065	1	1573200	+		32538	25019	23625	23796	31714	31714					0.06451076039888903
LPKQKEKNT	9	Unmodified	_LPKQKEKNT_					0	0	0		ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;ENSG00000133812|ENST00000256190|SBF2;SBF2|p.S1035F|1|0.13|ENSG00000133812|chr11:9845571-9845571|G/A|missense_variant	ENST00000533770.5_1_11:9861043-10215451:-|nuORF	ENST00000533770.5_1_11:9861043-10215451:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	362.9485778808594	3	362.548629	1084.62406	0.37271	0.00013513	-0.58667	-0.0002127	-0.21395	-7.7569E-05	362.54842941723547	35.561	0.71402	35.561	35.116	35.83	0					24	13	3	0	0	0	0.59266	1	11868	11868		15.248	0.29132	1	2824200			32539	4531	23626	23797	31715	31715					0.08513103397376653
LPKQLKVPR	9	Unmodified	_LPKQLKVPR_					0	0	0			REV__nc|ENSG00000180113|O60522-2|TDRD6	REV__nc|ENSG00000180113|O60522-2|TDRD6	MULTI-MSMS	A375_MHC_IP_R1	1	360.6292724609375	3	360.241359	1077.70225	-0.24734	-8.9103E-05	0.013847	4.9882E-06	-0.23349	-8.4114E-05	360.57601452727044	29.608	1.2002	29.608	29.453	30.653	0					28	23	2	0	0	0	0.69884	1	9702	9702		7.1017	1.8048	1	5733000	+		32540	21597	23627	23798	31716	31716					0.16650580773239199
LPKRRARL	8	Unmodified	_LPKRRARL_					0	0	0		ENST00000484092.1_1_3:117716162-117716402:-|nuORF	ENST00000484092.1_1_3:117716162-117716402:-|nuORF	ENST00000484092.1_1_3:117716162-117716402:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1009.7374877929688	1	1009.67414	1008.66687	0.67531	0.00068184	-3.5075	-0.0035415	-2.8322	-0.0028596	1010.6718614870284	113.69	0.90923	113.69	112.89	113.8	0					23	17	2	0	0	0	0.972	1	41422	41422		2.8892	0	1	5595300			32541	12554	23628	23799	31717	31717					0.16287963036108977
LPLFLELVTVL	11	Unmodified	_LPLFLELVTVL_					0	0	0			REV__ENSG00000167972|ENST00000301732|ABCA3	REV__ENSG00000167972|ENST00000301732|ABCA3	MULTI-SECPEP	A375_MHC_IP_R2	2	629.053466796875	2	628.896857	1255.77916	-0.72994	-0.00045906	-3.265	-0.0020533	-3.9949	-0.0025124	629.3977638332866	87.626	0.30201	88.358	88.166	88.468	0.7318					6	5	2	0	0	0	0.99606	1	33297	33297		3.2813	0	1	908730	+		32542	20808	23629	23800	31718	31718					0.1615033447908445
LPLFYVPDP	9	Unmodified	_LPLFYVPDP_					0	0	0		ENST00000593393.1_1_19:58917799-58918078:-|nuORF	ENST00000593393.1_1_19:58917799-58918078:-|nuORF	ENST00000593393.1_1_19:58917799-58918078:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	354.9536437988281	3	354.195304	1059.56408	-0.59486	-0.0002107	1.717	0.00060816	1.1222	0.00039746	354.1966476294726	28.387	0.40581	29.065	28.808	29.214	0.67857					12	7	3	0	0	0	0.67221	1	9808	9808		5.2969	0	1	702910			32543	13827	23630	23801	31719	31719					0.036684127341459316
LPLGSRAP	8	Unmodified	_LPLGSRAP_					0	0	0		ENST00000283206.8_1_2:112813179-112813299:+|nuORF	ENST00000283206.8_1_2:112813179-112813299:+|nuORF	ENST00000283206.8_1_2:112813179-112813299:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	406.1450500488281	2	405.745245	809.475937	0.21468	8.7107E-05	-0.1551	-6.2931E-05	0.059583	2.4176E-05	405.74512296195957	43.769	0.65537	44.539	44.228	44.883	0.7691					30	12	3	0	0	0	0.24409	1	16295	16295		63.563	0	1	12629000			32544	10436	23631	23802	31720	31720					0.06357836934171246
LPLICILIFY	10	Unmodified	_LPLICILIFY_					0	0	0		OR1J4|p.S217F|1|0.94|ENSG00000239590|chr9:122519790-122519790|C/T|missense_variant	OR1J4|p.S217F|1|0.94|ENSG00000239590|chr9:122519790-122519790|C/T|missense_variant	OR1J4|p.S217F|1|0.94|ENSG00000239590|chr9:122519790-122519790|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	403.9159240722656	3	403.24349	1206.70864	-0.68921	-0.00027792	0.77399	0.0003121	0.084779	3.4187E-05	403.2436398751824	38.059	0.40643	38.059	37.812	38.218	0					10	7	2	0	0	0	0.93911	1	12879	12879		4.1895	0.83378	1	1705900			32545	15066	23632	23803	31721	31721					0.11355337889767725
LPLKKLTW	8	Unmodified	_LPLKKLTW_					0	0	0			REV__TSHR|p.N372Tfs*40|1|0.29|ENSG00000165409|chr14:81143169-81143169|A/-|frameshift_variant	REV__TSHR|p.N372Tfs*40|1|0.29|ENSG00000165409|chr14:81143169-81143169|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	499.13848876953125	2	499.823495	997.632438	-0.26373	-0.00013182	0.50829	0.00025406	0.24456	0.00012224	499.8238159283009	118.05	0.50736	118.05	117.76	118.27	0					15	9	2	0	0	0	0.97144	1	43350	43350		9.3474	4.1168	1	4168100	+		32546	20580	23633	23804	31722	31722					0.1335270210464614
LPLKTKVLDM	10	Unmodified	_LPLKTKVLDM_					0	0	0		ENSG00000174130|ENST00000508254|TLR6;nc|ENSG00000174130|Q9Y2C9-2|TLR6	ENSG00000174130|ENST00000508254|TLR6	ENSG00000174130|ENST00000508254|TLR6	MSMS	A375_MHC_IP_R1	1	386.6051025390625	3	386.570265	1156.68897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.847	1	37.847	37.347	38.347	0								0	0	0	0.15541	1	12787	12787		1.5923	0.13716	1				32547	7857	23634	23805	31723	31723					0.11688961879008275
LPLLASTDF	9	Unmodified	_LPLLASTDF_					0	0	0		SEC22C|p.S19L|1|0.32|ENSG00000093183|chr3:42568991-42568991|G/A|missense_variant	SEC22C|p.S19L|1|0.32|ENSG00000093183|chr3:42568991-42568991|G/A|missense_variant	SEC22C|p.S19L|1|0.32|ENSG00000093183|chr3:42568991-42568991|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	488.2048645019531	2	488.771126	975.527698	-0.89477	-0.00043734	-2.3991	-0.0011726	-3.2939	-0.00161	488.77003021879074	38.26	0.50934	39.035	38.791	39.3	0.77451					19	9	3	0	0	0	0.67221	1	14051	14051		13.508	0	1	2344100			32548	29125	23635	23806	31724	31724					0.03895535837432362
LPLLKKPLKR	10	Unmodified	_LPLLKKPLKR_					0	0	0		ENSG00000241962|ENST00000424491|unknown	ENSG00000241962|ENST00000424491|unknown	ENSG00000241962|ENST00000424491|unknown	MSMS	A375_MHC_IP_R2	2	603.4577026367188	2	603.426451	1204.83835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.55	1	148.57	148.07	149.07	0.018707								0	0	0	0.15642	1	57689	57689		0	0	1				32549	9790	23636	23807	31725	31725					0.2441227528388481
LPLLLIKIIIT	11	Unmodified	_LPLLLIKIIIT_					0	0	0			REV__tr|U7T0Y6|U7T0Y6_FUSNUInnermembraneproteinoxaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00741PE=3SV=1	REV__tr|U7T0Y6|U7T0Y6_FUSNUInnermembraneproteinoxaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00741PE=3SV=1	MSMS	A375_MHC_IP_R2	2	625.3939819335938	2	625.446517	1248.87848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.71	1	102.47	101.97	102.97	0.76428								0	0	0	0.16354	1	38551	38551		0.30703	0	1		+		32550	28686	23637	23808	31726	31726					0.2639977716382873
LPLLRRLARRL	11	Unmodified	_LPLLRRLARRL_					0	0	0		ENSG00000262179|ENST00000573382|MYMX	ENSG00000262179|ENST00000573382|MYMX	ENSG00000262179|ENST00000573382|MYMX	MSMS	A375_MHC_IP_R2	2	689.2177124023438	2	688.96988	1375.92521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.91	1	125.24	124.74	125.74	0.32969								0	0	0	0.16331	1	48473	48473		1.4819	0	1				32551	9942	23638	23809	31727	31727					0.2522807455832208
LPLLSVYQLS	10	Unmodified	_LPLLSVYQLS_					0	0	0		nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	nc|ENSG00000095319|Q5SRE5-2|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	MSMS	A375_MHC_IP_R1	1	378.2730712890625	3	378.225264	1131.65396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.98	1	41.98	41.48	42.48	0								0	0	0	0.15306	1	14524	14524		10.899	3.7972	1				32552	2039	23639	23810	31728	31728					0.09340042342705601
LPLLWNWDRRS	11	Unmodified	_LPLLWNWDRRS_					0	0	0		nc|ENSG00000168827|Q96RP9-2|GFM1;ENST00000478251.1_1_3:158367761-158367881:+|nuORF	nc|ENSG00000168827|Q96RP9-2|GFM1	nc|ENSG00000168827|Q96RP9-2|GFM1	MSMS	A375_MHC_IP_R1	1	728.5464477539062	2	728.39641	1454.77827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.89	1	125.89	125.39	126.39	0								0	0	0	0.16249	1	48007	48007		5.7319	0.43497	1				32553	14757	23640	23811	31729	31729					0.06906932882725414
LPLPLRNIE	9	Unmodified	_LPLPLRNIE_					0	0	0			REV__ENSG00000141431|ENST00000269197|ASXL3	REV__ENSG00000141431|ENST00000269197|ASXL3	MULTI-SECPEP	A375_MHC_IP_R2	2	355.27703857421875	3	355.553603	1063.63898	-0.50812	-0.00018066	-0.4979	-0.00017703	-1.006	-0.00035769	355.5533840026372	57.788	0.35701	58.537	58.272	58.629	0.74894					11	6	2	0	0	0	0.73363	1	21760	21760		7.1017	1.699	1	864610	+		32554	19264	23641	23812	31730	31730					0.10970595265393968
LPLRPAWVTV	10	Unmodified	_LPLRPAWVTV_					0	0	0			REV__nc|ENSG00000139364|Q14DG7|TMEM132B	REV__nc|ENSG00000139364|Q14DG7|TMEM132B	MULTI-SECPEP	A375_MHC_IP_R1	1	575.72265625	2	576.350409	1150.68626	-0.04439	-2.5584E-05	0.54537	0.00031433	0.50098	0.00028874	576.3505627076928	105.77	0.55692	105.77	105.4	105.96	0					12	10	2	0	0	0	0.87163	1	38790	38790		19.257	10.664	1	1488500	+		32555	19154	23642	23813	31731	31731					0.11694874536351563
LPLRPAWVTV	10	Unmodified	_LPLRPAWVTV_					0	0	0			REV__nc|ENSG00000139364|Q14DG7|TMEM132B	REV__nc|ENSG00000139364|Q14DG7|TMEM132B	MULTI-MATCH	A375_MHC_IP_R2	2		2	576.350409	1150.68626	-0.10852	-6.2547E-05	-0.27685	-0.00015956	-0.38537	-0.00022211	576.3500436323022	104.66	0.50839	105.42	105.21	105.72	0.76308	-0.17654	-0.00057319	NaN	19.257	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2489600	+		32556	19154	23642	23813							0.11694874536351563
LPLRRRWRRPW	11	Unmodified	_LPLRRRWRRPW_					0	0	0		ENST00000418337.6_2_7:151292537-151329253:-|nuORF;ENST00000493872.5_1_7:151328836-151329256:-|nuORF	ENST00000418337.6_2_7:151292537-151329253:-|nuORF	ENST00000418337.6_2_7:151292537-151329253:-|nuORF	MSMS	A375_MHC_IP_R2	2	796.4537353515625	2	796.481477	1590.9484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.04	1	126.33	125.83	126.83	0.2951								0	0	0	0.16353	1	49272	49272		0.35063	0	1				32557	11706	23643	23814	31732	31732					0.17656513395672846
LPLSHQRTT	9	Unmodified	_LPLSHQRTT_					0	0	0		ENST00000451311.6_1_X:12995041-12995203:+|nuORF	ENST00000451311.6_1_X:12995041-12995203:+|nuORF	ENST00000451311.6_1_X:12995041-12995203:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	527.1953735351562	2	526.795998	1051.57744	-0.47086	-0.00024805	-0.86163	-0.0004539	-1.3325	-0.00070195	526.7954416832126	30.418	0.65726	31.137	30.809	31.467	0.71857					19	12	2	0	0	0	0.22528	1	10702	10702		36.127	1.7253	1	2352300			32558	12072	23644	23815	31733	31733					0.05371663566097595
LPLTARHVR	9	Unmodified	_LPLTARHVR_					0	0	0		ENST00000493082.5_1_5:850626-880074:-|nuORF	ENST00000493082.5_1_5:850626-880074:-|nuORF	ENST00000493082.5_1_5:850626-880074:-|nuORF	MSMS	A375_MHC_IP_R1	1	354.9533386230469	3	354.889209	1061.6458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.338	1	29.338	28.838	29.838	0								0	0	0	0.15331	1	9162	9162		16.149	7.9936	1				32559	12678	23645	23816	31734	31734					0.11743952936603819
LPLVLKKLLLS	11	Unmodified	_LPLVLKKLLLS_					0	0	0		ENSG00000167077|ENST00000401548|MEI1;nc|ENSG00000167077|Q5TIA1-6|MEI1;nc|ENSG00000167077|Q5TIA1-4|MEI1	ENSG00000167077|ENST00000401548|MEI1	ENSG00000167077|ENST00000401548|MEI1	MSMS	A375_MHC_IP_R2	2	618.9385375976562	2	618.936317	1235.85808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.934	1	19.537	19.037	20.037	0.60308								0	0	0	0.16354	1	5680	5680		0.30703	0	1				32560	7150	23646	23817	31735	31735					0.24958606504037562
LPLWRARW	8	Unmodified	_LPLWRARW_					0	0	0		ENST00000525190.1_1_11:65688642-65688903:+|nuORF	ENST00000525190.1_1_11:65688642-65688903:+|nuORF	ENST00000525190.1_1_11:65688642-65688903:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	549.7213134765625	2	549.321986	1096.62942	-0.80118	-0.00044011	-0.22735	-0.00012489	-1.0285	-0.00056499	549.3218221963527	106.14	0.76541	106.9	106.48	107.24	0.75977					18	14	2	0	0	0	0.7479	1	40101	40101		20.871	6.9652	1	1713600			32561	13068	23647	23818	31736	31736					0.08496871770512371
LPLYNKKI	8	Unmodified	_LPLYNKKI_					0	0	0			REV__ENSG00000171503|ENST00000511912|ETFDH	REV__ENSG00000171503|ENST00000511912|ETFDH	MULTI-MSMS	A375_MHC_IP_R1	1	989.3538208007812	1	988.618979	987.611703	0.17622	0.00017422	0.50605	0.00050029	0.68227	0.0006745	988.6202954910178	125.46	0.40421	125.46	125.3	125.7	0					12	7	3	0	0	0	0.7758	1	47863	47863		10.183	0.83596	1	57547000	+		32562	21073	23648	23819	31737	31737					0.11740111724986946
LPMLSTIRRM	10	Unmodified	_LPMLSTIRRM_					0	0	0		ENST00000606930.1_1_5:150891787-150892117:+|nuORF	ENST00000606930.1_1_5:150891787-150892117:+|nuORF	ENST00000606930.1_1_5:150891787-150892117:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	405.934814453125	3	406.566749	1216.67842	-0.31022	-0.00012613	1.2723	0.00051727	0.96208	0.00039115	406.56703510004365	29.912	0.25374	30.61	30.485	30.739	0.69872					6	4	2	0	0	0	0.92199	1	10430	10430		14.957	11.37	1	635580			32563	13915	23649	23820	31738	31738					0.07874655952946341
LPMTWTSV	8	Unmodified	_LPMTWTSV_					0	0	0		ENST00000607414.1_1_14:102414768-102414975:+|nuORF	ENST00000607414.1_1_14:102414768-102414975:+|nuORF	ENST00000607414.1_1_14:102414768-102414975:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	468.13885498046875	2	467.738771	933.462989	-0.27417	-0.00012824	-0.32421	-0.00015165	-0.59838	-0.00027988	467.7385360633063	81.405	1.1653	81.405	80.948	82.113	0					33	22	2	0	0	0	0.70843	1	29752	29752		32.117	0	1	2165900			32564	13919	23650	23821	31739	31739					-0.006403622402217479
LPMVLGLLLLV	11	Unmodified	_LPMVLGLLLLV_					0	0	0			REV__ENSG00000164047|ENST00000652295|CAMP	REV__ENSG00000164047|ENST00000652295|CAMP	MULTI-SECPEP	A375_MHC_IP_R2	2	1181.388916015625	1	1180.77377	1179.76649	0.18586	0.00021945	4.0523	0.0047848	4.2381	0.0050043	1180.774371509101	123.69	0.45532	124.02	123.79	124.24	0.32969					14	8	3	0	0	0	0.99526	1	47502	47502		3.5965	0	1	16503000	+		32565	20440	23651	23822	31740	31740					0.18379599815193615
LPMVMTIRF	9	Unmodified	_LPMVMTIRF_					0	0	0			REV__ENST00000563448.1_16:18856812-18856863:-|nuORF	REV__ENST00000563448.1_16:18856812-18856863:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	370.2856140136719	3	369.873291	1106.59804	0.41083	0.00015196	0.28243	0.00010446	0.69326	0.00025642	369.8733686048467	51.287	0.30547	51.287	51.119	51.424	0					12	5	3	0	0	0	0.80005	1	18221	18221		1.0715	0.20709	1	1536700	+		32566	26206	23652	23823	31741	31741					0.04900794629907068
LPNKRIKPL	9	Unmodified	_LPNKRIKPL_					0	0	0			REV__ENSG00000145996|ENST00000274695|CDKAL1	REV__ENSG00000145996|ENST00000274695|CDKAL1	MULTI-MSMS	A375_MHC_IP_R1	1	360.6293029785156	3	360.241359	1077.70225	-0.24734	-8.9103E-05	0.013847	4.9882E-06	-0.23349	-8.4114E-05	360.57601452727044	29.608	1.2002	29.608	29.453	30.653	0					28	23	2	0	0	0	0.68046	1	9424	9424		8.7454	0.58988	1	5733000	+		32567	19510	23653	23824	31742	31742					0.16650580773261936
LPNLVQMQN	9	Unmodified	_LPNLVQMQN_					0	0	0			REV__SLC15A2|p.D342N|1|0.42|ENSG00000163406|chr3:121924372-121924372|G/A|missense_variant	REV__SLC15A2|p.D342N|1|0.42|ENSG00000163406|chr3:121924372-121924372|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	528.6738891601562	2	528.778959	1055.54336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.06	1	88.06	87.56	88.56	0								0	0	0	0.1521	1	32321	32321		18.135	1.0221	1		+		32568	27974	23654	23825	31743	31743					0.017814990828355803
LPNMVTLMLV	10	Unmodified	_LPNMVTLMLV_					0	0	0		tr|U7T2B8|U7T2B8_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00627PE=3SV=1	tr|U7T2B8|U7T2B8_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00627PE=3SV=1	tr|U7T2B8|U7T2B8_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00627PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	376.9411926269531	3	377.548584	1129.62392	-0.26313	-9.9343E-05	0.31352	0.00011837	0.050391	1.9025E-05	377.54872096694567	33.556	0.50765	34.308	33.992	34.5	0.75225					13	9	2	0	0	0	0.92957	1	11907	11907		5.7834	5.7834	1	934540			32569	29929	23655	23826	31744	31744					0.06429644081504193
LPNSDLIPS	9	Unmodified	_LPNSDLIPS_					0	0	0		tr|U7T106|U7T106_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00761PE=4SV=1	tr|U7T106|U7T106_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00761PE=4SV=1	tr|U7T106|U7T106_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00761PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	956.3539428710938	1	955.509488	954.502212	-0.03324	-3.1762E-05	-0.10289	-9.8315E-05	-0.13613	-0.00013008	955.5092972781226	79.206	0.6073	79.951	79.642	80.249	0.74473					26	11	3	0	0	0	0.69674	1	29952	29952		7.2892	0.56607	1	11354000			32570	29897	23656	23827	31745	31745					0.023140613150076206
LPNSDLIPS	9	Unmodified	_LPNSDLIPS_					0	0	0		tr|U7T106|U7T106_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00761PE=4SV=1	tr|U7T106|U7T106_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00761PE=4SV=1	tr|U7T106|U7T106_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00761PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		1	955.509488	954.502212	0.0052109	4.9791E-06	0.24735	0.00023635	0.25256	0.00024133	955.5095625309287	80.03	0.61256	80.03	79.676	80.289	0	0.039668	0.00019009	NaN	7.2892	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10062000			32571	29897	23656	23827							0.023140613150076206
LPNTPFPF	8	Unmodified	_LPNTPFPF_					0	0	0			REV__OR2M3|p.S183Ffs*9|1|0.31|ENSG00000228198|chr1:248203613-248203614|-/T|frameshift_variant	REV__OR2M3|p.S183Ffs*9|1|0.31|ENSG00000228198|chr1:248203613-248203614|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	467.14715576171875	2	466.747453	931.480354	-0.61898	-0.00028891	0.42482	0.00019828	-0.19416	-9.0625E-05	466.747509470523	48.448	0.65591	49.205	48.829	49.485	0.75737					21	12	2	0	0	0	0.88799	1	18162	18162		5.2307	0	1	6287700	+		32572	27663	23657	23828	31746	31746					0.0118730135708347
LPNYKSKILR	10	Unmodified	_LPNYKSKILR_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1;NCBP1|p.F710Sfs*10|1|0.05|ENSG00000136937|chr9:97668955-97668955|T/-|frameshift_variant	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MSMS	A375_MHC_IP_R2	2	616.3780517578125	2	616.379697	1230.74484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.14	1	125.43	124.93	125.93	0.2951								0	0	0	0.15451	1	48653	48653		6.2058	0	1				32573	4844	23658	23829	31747	31747					0.13869931110843936
LPPAGRLP	8	Unmodified	_LPPAGRLP_					0	0	0			REV__ENST00000543035.5_2_12:3068990-3120181:+|nuORF	REV__ENST00000543035.5_2_12:3068990-3120181:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	411.1556091308594	2	410.755613	819.496673	0.079848	3.2798E-05	0.20597	8.4603E-05	0.28582	0.0001174	410.7555532137048	33.581	1.2134	33.581	33.09	34.303	0					51	23	3	0	0	0	0.64068	1	10879	10879		49.669	9.2203	1	8483800	+		32574	25972	23659	23830	31748	31748					0.07970427313830442
LPPAGRPV	8	Unmodified	_LPPAGRPV_					0	0	0		ENST00000290881.11_1_16:67217371-67217884:-|nuORF	ENST00000290881.11_1_16:67217371-67217884:-|nuORF	ENST00000290881.11_1_16:67217371-67217884:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	403.2683410644531	2	403.747788	805.481023	-0.0099001	-3.9971E-06	0.092702	3.7428E-05	0.082801	3.3431E-05	403.74769032659634	31.475	0.81529	32.193	31.821	32.636	0.71857					26	15	2	0	0	0	0.91495	1	11144	11144		18.135	0	1	1875800			32575	10471	23660	23831	31749	31749					0.07050140796798132
LPPARAPV	8	Unmodified	_LPPARAPV_					0	0	0		ENST00000304987.3_1_11:111473156-111473270:+|nuORF	ENST00000304987.3_1_11:111473156-111473270:+|nuORF	ENST00000304987.3_1_11:111473156-111473270:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	411.3235778808594	2	410.755613	819.496673	-0.082107	-3.3726E-05	0.14925	6.1304E-05	0.067139	2.7578E-05	410.7554921199034	32.882	1.1706	33.619	33.061	34.232	0.73691					54	22	3	0	0	0	0.70843	1	11895	11895		32.117	5.7757	1	7802800			32576	10566	23661	23832	31750	31750					0.0797042731384181
LPPGAGDEPEP	11	Unmodified	_LPPGAGDEPEP_					0	0	0			REV__ENST00000314256.11_1_17:73495734-73496109:+|nuORF	REV__ENST00000314256.11_1_17:73495734-73496109:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	540.1873779296875	2	539.756204	1077.49785	-0.53607	-0.00028935	-0.70645	-0.00038131	-1.2425	-0.00067066	539.7558526936389	71.06	0.6154	71.06	70.749	71.364	0					20	11	2	0	0	0	0.72119	1	25794	25794		13.906	0.86358	1	2219500	+		32577	23523	23662	23833	31751	31751					-0.03779447898568833
LPPGAGDEPEP	11	Unmodified	_LPPGAGDEPEP_					0	0	0			REV__ENST00000314256.11_1_17:73495734-73496109:+|nuORF	REV__ENST00000314256.11_1_17:73495734-73496109:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	539.756204	1077.49785	-0.53607	-0.00028935	-0.70645	-0.00038131	-1.2425	-0.00067066	539.7558526936389	71.06	0.6154	71.06	70.749	71.364	0	-0.022229	0.00010382	NaN	13.906	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2219500	+		32578	23523	23662	23833							-0.03779447898568833
LPPGHTMLI	9	Unmodified	_LPPGHTMLI_					0	0	0			REV__ENST00000529220.5_1_11:30433017-30462824:-|nuORF	REV__ENST00000529220.5_1_11:30433017-30462824:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	489.1885070800781	2	489.775688	977.536823	-0.53206	-0.00026059	1.0876	0.00053268	0.55553	0.00027209	489.7763002677954	131.9	0.15166	131.9	131.78	131.93	0					4	2	2	0	0	0	0.60012	1	50868	50868		12.532	0	1	968890	+		32579	16514	23663	23834	31752	31752					0.047156059221151736
LPPGNFYTSQ	10	Unmodified	_LPPGNFYTSQ_					0	0	0		nc|ENSG00000175984|Q68D51-2|DENND2C;nc|ENSG00000175984|Q68D51-3|DENND2C;ENSG00000175984|ENST00000393274|DENND2C	nc|ENSG00000175984|Q68D51-2|DENND2C	nc|ENSG00000175984|Q68D51-2|DENND2C	MULTI-SECPEP	A375_MHC_IP_R1	1	375.58563232421875	3	375.185468	1122.53457	-0.0011271	-4.2288E-07	0.17301	6.4912E-05	0.17189	6.4489E-05	375.18544459065157	30.297	0.60374	30.297	30.099	30.703	0					17	11	2	0	0	0	0.89761	1	9627	9627		10.899	1.5158	1	7975400			32580	7991	23664	23835	31753	31753					-0.021791512820072967
LPPGPGLR	8	Unmodified	_LPPGPGLR_					0	0	0			REV__ENST00000478283.5_1_1:29063632-29063932:+|nuORF	REV__ENST00000478283.5_1_1:29063632-29063932:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	403.2681884765625	2	403.747788	805.481023	-0.53706	-0.00021684	0.52209	0.00021079	-0.014964	-6.0415E-06	403.7479289817019	32.269	0.8165	32.269	31.718	32.535	0					22	15	2	0	0	0	0.91495	1	10438	10438		18.135	0	1	2480700	+		32581	25211	23665	23836	31754	31754					0.07050140796809501
LPPGVLRAA	9	Unmodified	_LPPGVLRAA_					0	0	0		ENST00000536178.3_1_7:101944355-101950044:+|nuORF	ENST00000536178.3_1_7:101944355-101950044:+|nuORF	ENST00000536178.3_1_7:101944355-101950044:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	446.64984130859375	2	447.281995	892.549437	-0.087019	-3.8922E-05	-0.58562	-0.00026194	-0.67264	-0.00030086	447.28161479255215	55.304	0.2544	55.304	55.177	55.431	0					6	4	2	0	0	0	0.77834	1	19733	19733		8.5933	3.8373	1	633880			32582	13237	23666	23837	31755	31755					0.09886385376648832
LPPLECMC	8	Unmodified	_LPPLECMC_					0	0	0		ENST00000380122.9_2_X:16860088-16860244:+|nuORF	ENST00000380122.9_2_X:16860088-16860244:+|nuORF	ENST00000380122.9_2_X:16860088-16860244:+|nuORF	MSMS	A375_MHC_IP_R2	2	453.1516418457031	2	453.20011	904.385667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.453	1	81.197	80.697	81.697	0.74474								0	0	0	0.16876	1	30543	30543		6.3541	0.59368	1				32583	11346	23667	23838	31756	31756					-0.07035039772404161
LPPLWWYIVT	10	Unmodified	_LPPLWWYIVT_					0	0	0		ENSG00000147684|ENST00000276689|NDUFB9	ENSG00000147684|ENST00000276689|NDUFB9	ENSG00000147684|ENST00000276689|NDUFB9	MULTI-SECPEP	A375_MHC_IP_R1	1	429.4883117675781	3	429.909387	1286.70633	-0.37366	-0.00016064	-0.39506	-0.00016984	-0.76872	-0.00033048	429.90912345605966	130.9	1.5656	130.9	130.67	132.23	0					58	30	3	0	0	0	0.94651	1	50489	50489		3.5871	0.5148	1	21089000			32584	5701	23668	23839	31757	31757					0.07444625476296096
LPPPPPPPP	9	Unmodified	_LPPPPPPPP_					0	0	0		nc|ENSG00000175785|Q86XR5-2|PRIMA1;nc|ENSG00000117560|P48023-2|FASLG;ENST00000597121.5_1_19:50086773-50093643:+|nuORF;ENSG00000126460|ENST00000246794|PRRG2;ENSG00000176182|ENST00000322217|MYPOP;ENSG00000117560|ENST00000367721|FASLG;ENSG00000146083|ENST00000274811|RNF44;nc|ENSG00000146083|Q7L0R7-2|RNF44;ENSG00000175785|ENST00000393140|PRIMA1;ENST00000379565.7_1_X:20227482-20284914:-|nuORF;ENST00000573523.5_1_17:4574736-4578861:-|nuORF;ZBTB7B|p.R195W|1|0.22|ENSG00000160685|chr1:155015243-155015243|C/T|missense_variant;ENST00000508096.1_1_10:126605730-126631034:+|nuORF;ENST00000361272.8_2_8:17102747-17104366:-|nuORF;ENST00000508478.1_1_5:175957081-175957609:-|nuORF;nc|ENSG00000110076|P58401|NRXN2;ENST00000596700.5_1_19:50084718-50093643:+|nuORF;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000186648|Q8ND23-2|CARMIL3;ENST00000560349.1_1_14:24532322-24538610:+|nuORF;nc|ENSG00000168297|Q7Z7A4-5|PXK;ENSG00000204335|ENST00000375281|SP5;ENSG00000176165|ENST00000313071|FOXG1;nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000156232|ENST00000286760|WHAMM;ENSG00000145414|ENST00000274054|NAF1;ENST00000559694.5_1_14:24530705-24534560:+|nuORF;ENST00000370452.7_1_6:71377516-71377693:+|nuORF;ENST00000247087.9_1_1:27875205-27875379:-|nuORF;ENST00000403681.6_2_12:66218024-66218900:+|nuORF;ZNF318|p.P1450S|1|0.24|ENSG00000171467|chr6:43339650-43339650|G/A|missense_variant;ENST00000584214.1_1_17:16253243-16256750:-|nuORF;nc|ENSG00000168297|Q7Z7A4-3|PXK;ENSG00000168505|ENST00000306318|GBX2;ENSG00000143006|ENST00000371445|DMRTB1;nc|ENSG00000187017|B1AK53-2|ESPN;nc|ENSG00000166582|Q7Z7K6|CENPV;ENSG00000166582|ENST00000299736|CENPV;ENSG00000139718|ENST00000604567|SETD1B;nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000186648|ENST00000342740|CARMIL3;ENSG00000100312|ENST00000216139|ACR;ENSG00000139800|ENST00000267294|ZIC5;ENSG00000173166|ENST00000319170|RAPH1;ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1;nc|ENSG00000248905|Q68DA7-5|FMN1;chr15:33008075-33153048|430|22.15|0.56|5.32|-|ENST00000561249|FMN1,FMN1;ENSG00000248905|ENST00000616417|FMN1;ENSG00000077420|ENST00000376236|APBB1IP;ENSG00000101901|ENST00000394780|ALG13;nc|ENSG00000101901|Q9NP73-3|ALG13;ENSG00000112290|ENST00000392589|WASF1;nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000124496|ENST00000695948|TRERF1;nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN;ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B;ENSG00000138771|ENST00000296043|SHROOM3;ENSG00000139218|ENST00000369367|SCAF11;nc|ENSG00000139218|Q99590-2|SCAF11;ENSG00000141456|ENST00000572293|PELP1;ENSG00000160685|ENST00000535420|ZBTB7B;nc|ENSG00000160685|O15156-2|ZBTB7B;ENSG00000162458|ENST00000375766|FBLIM1;nc|ENSG00000162458|Q8WUP2-2|FBLIM1;ENSG00000168297|ENST00000356151|PXK;ENSG00000170807|ENST00000458573|LMOD2;ENSG00000171467|ENST00000361428|ZNF318;ENSG00000183153|ENST00000578689|GJD3;ENSG00000187017|ENST00000645284|ESPN;ENSG00000188070|ENST00000433688|ZFTA;ENSG00000204334|ENST00000697325|ERICH2;nc|ENSG00000170004|Q12873-3|CHD3	REV__ENSG00000131504|ENST00000389054|DIAPH1;REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000139718|ENST00000604567|SETD1B;REV__ENSG00000170807|ENST00000458573|LMOD2;ENSG00000186648|ENST00000342740|CARMIL3;REV__nc|ENSG00000127481|Q5T4S7-3|UBR4;ENSG00000100312|ENST00000216139|ACR;ENSG00000139800|ENST00000267294|ZIC5;REV__nc|ENSG00000091656|Q86UP3|ZFHX4;REV__ENSG00000140836|ENST00000268489|ZFHX3;ENSG00000173166|ENST00000319170|RAPH1;REV__ENSG00000077420|ENST00000376236|APBB1IP;REV__nc|ENSG00000135250|P78362|SRPK2;ENSG00000184922|ENST00000331495|FMNL1;REV__ENSG00000145414|ENST00000274054|NAF1;REV__ENSG00000164916|ENST00000328914|FOXK1;REV__nc|ENSG00000248905|Q68DA7-5|FMN1;nc|ENSG00000248905|Q68DA7-5|FMN1;ENSG00000077420|ENST00000376236|APBB1IP;ENSG00000101901|ENST00000394780|ALG13;ENSG00000112290|ENST00000392589|WASF1;nc|ENSG00000124496|Q96PN7|TRERF1;nc|ENSG00000130396|P55196-2|AFDN;ENSG00000132510|ENST00000448097|KDM6B;ENSG00000138771|ENST00000296043|SHROOM3;ENSG00000139218|ENST00000369367|SCAF11;ENSG00000141456|ENST00000572293|PELP1;ENSG00000160685|ENST00000535420|ZBTB7B;ENSG00000162458|ENST00000375766|FBLIM1;ENSG00000168297|ENST00000356151|PXK;ENSG00000170807|ENST00000458573|LMOD2;ENSG00000171467|ENST00000361428|ZNF318;ENSG00000183153|ENST00000578689|GJD3;ENSG00000187017|ENST00000645284|ESPN;ENSG00000188070|ENST00000433688|ZFTA;ENSG00000204334|ENST00000697325|ERICH2;nc|ENSG00000170004|Q12873-3|CHD3;REV__CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant;REV__ENSG00000248905|ENST00000616417|FMN1;REV__nc|ENSG00000048991|Q15032-2|R3HDM1;REV__ENSG00000131061|ENST00000375200|ZNF341;REV__ENSG00000132510|ENST00000448097|KDM6B;REV__nc|ENSG00000139734|Q9NSV4-2|DIAPH3;REV__ENSG00000141431|ENST00000269197|ASXL3;REV__ENSG00000156232|ENST00000286760|WHAMM;REV__ENSG00000157827|ENST00000288670|FMNL2;REV__ENSG00000173166|ENST00000319170|RAPH1;REV__ENSG00000173273|ENST00000310430|TNKS;REV__ENSG00000184205|ENST00000375442|TSPYL2;REV__ENSG00000187017|ENST00000645284|ESPN;REV__ENSG00000203485|ENST00000392634|INF2;REV__ENSG00000215474|ENST00000425639|SKOR2;REV__ENSG00000274209|ENST00000620264|ANTXRL;REV__ENST00000494373.1_1_2:54014190-54014463:+|nuORF;REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L;REV__nc|ENSG00000127481|Q5T4S7-5|UBR4;REV__nc|ENSG00000170004|Q12873-3|CHD3	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	A375_MHC_IP_R1	1	455.2734069824219	2	454.765646	907.516739	-0.19425	-8.8339E-05	0.058575	2.6638E-05	-0.13568	-6.1701E-05	454.7655198453245	54.791	1.4193	54.791	54.063	55.482	0					41	27	2	0	0	0	0.024178	1	19474	19474		79.935	0	1	1524600			32585	21972;18422;14761;16955;5104;5060;7773;22462;21198;27212;15710;27527;27349;19232;8619;7603;21020;18585;5243;2157;5031;18659;4416;19178;19472;3907;8881;22004;19264;20046;22955;27157;16377;21212;15626;6537;437;5112;16694;18836;20526;9430;18611;4241;6431;7542;3068;2335;19970;1655;21802;7284;22676;8470;25435;8769;8800	23669	23840	31758	31758					0.05928178253805072
LPPPVHRH	8	Unmodified	_LPPPVHRH_					0	0	0		ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	MSMS	A375_MHC_IP_R2	2	476.6766052246094	2	476.777411	951.540269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.65	1	147.67	147.17	148.17	0.019913								0	0	0	0.16876	1	57392	57392		0.79363	0.10326	1				32586	8076	23670	23841	31759	31759					0.06256036810987098
LPPRKPLS	8	Unmodified	_LPPRKPLS_					0	0	0			REV__ENST00000445330.1_1_X:151073125-151079553:-|nuORF	REV__ENST00000445330.1_1_X:151073125-151079553:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	453.6572265625	2	454.28982	906.565087	-0.16215	-7.3665E-05	0.49763	0.00022607	0.33547	0.0001524	454.28993813962245	70.802	0.61365	70.802	70.494	71.108	0					28	11	4	0	0	0	0.84748	1	25736	25736		21.747	0	1	5048200	+		32587	24842	23671	23842	31760	31760					0.10806671893703879
LPPTIFHLL	9	Unmodified	_LPPTIFHLL_					0	0	0			REV__ENSG00000135569|ENST00000258034|TAAR5	REV__ENSG00000135569|ENST00000258034|TAAR5	MULTI-SECPEP	A375_MHC_IP_R1	1	525.6845703125	2	525.820953	1049.62735	-0.39755	-0.00020904	-0.17854	-9.3882E-05	-0.57609	-0.00030292	525.8207997521815	56.856	0.76467	56.856	56.498	57.263	0					26	14	3	0	0	0	0.48581	1	20290	20290		18.135	0	1	2709500	+		32588	18864	23672	23843	31761	31761					0.10452398242046002
LPPVPPRLDL	10	Unmodified	_LPPVPPRLDL_					0	0	0		nc|ENSG00000114423|Q13191-3|CBLB;nc|ENSG00000114423|Q13191-2|CBLB;ENSG00000114423|ENST00000394030|CBLB;ENSG00000110395|ENST00000264033|CBL	nc|ENSG00000114423|Q13191-3|CBLB	nc|ENSG00000114423|Q13191-3|CBLB	MULTI-MSMS	A375_MHC_IP_R1	1	559.2432250976562	2	558.842416	1115.67028	-0.48654	-0.0002719	0.96585	0.00053976	0.47931	0.00026786	558.8430636393687	128.71	0.25484	128.71	128.58	128.84	0					8	4	3	0	0	0	0.25271	1	49483	49483		43.858	11.073	1	6478300			32589	3220	23673	23844	31762	31762					0.1170716829947196
LPPYMSHTIPW	11	Unmodified	_LPPYMSHTIPW_					0	0	0		ENST00000374810.7_1_20:33298341-33298617:+|nuORF	ENST00000374810.7_1_20:33298341-33298617:+|nuORF	ENST00000374810.7_1_20:33298341-33298617:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	448.1920166015625	3	447.893519	1340.65873	-0.53901	-0.00024142	3.9242	0.0017576	3.3852	0.0015162	448.2290576165596	50.131	0.30379	50.885	50.702	51.006	0.75406					7	5	2	0	0	0	0.73016	1	18833	18833		4.4062	1.7749	1	427780			32590	11259	23674	23845	31763	31763					0.002026032138246592
LPPYMSHTIPW	11	Unmodified	_LPPYMSHTIPW_					0	0	0		ENST00000374810.7_1_20:33298341-33298617:+|nuORF	ENST00000374810.7_1_20:33298341-33298617:+|nuORF	ENST00000374810.7_1_20:33298341-33298617:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	447.893519	1340.65873	-0.041729	-1.869E-05	5.6596	0.0025349	5.6179	0.0025162	447.8960295054605	51.03	0.30486	51.03	50.814	51.119	0	0.072305	0.00017475	NaN	4.4062	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1097900			32591	11259	23674	23845							0.002026032138246592
LPQFKPEWS	9	Unmodified	_LPQFKPEWS_					0	0	0			REV__ENSG00000197410|ENST00000357232|DCHS2	REV__ENSG00000197410|ENST00000357232|DCHS2	MULTI-MSMS	A375_MHC_IP_R2	2	380.27642822265625	3	377.865958	1130.57605	0.18166	6.8644E-05	-0.75072	-0.00028367	-0.56906	-0.00021503	377.8645934669787	27.588	1.2169	28.266	27.843	29.06	0.67857					115	23	8	0	0	0	0.65748	1	9445	9445		10.8	0.64894	1	268510000	+		32592	22286	23675	23846	31764	31764					0.015980294773271453
LPQHIKSMVF	10	Unmodified	_LPQHIKSMVF_					0	0	0		SLC6A16|p.L458F|1|0.32|ENSG00000063127|chr19:49294411-49294411|G/A|missense_variant	SLC6A16|p.L458F|1|0.32|ENSG00000063127|chr19:49294411-49294411|G/A|missense_variant	SLC6A16|p.L458F|1|0.32|ENSG00000063127|chr19:49294411-49294411|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	600.7332763671875	2	600.333901	1198.65325	-0.56191	-0.00033733	-0.1138	-6.8317E-05	-0.6757	-0.00040565	600.3337405910278	128.9	2.3296	129.14	128.45	130.78	0.23946					85	45	2	0	0	0	0.71245	1	51165	51165		6.7232	0.51738	1	70884000			32593	29190	23676	23847	31765	31765					0.06186924421990625
LPQHPEGGI	9	Unmodified	_LPQHPEGGI_					0	0	0		ENST00000576764.1_1_17:3807220-3807855:-|nuORF	ENST00000576764.1_1_17:3807220-3807855:-|nuORF	ENST00000576764.1_1_17:3807220-3807855:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	474.6505432128906	2	474.250892	946.48723	-0.78692	-0.0003732	-0.17547	-8.3217E-05	-0.96239	-0.00045641	474.25067764939075	35.375	0.55659	36.139	35.878	36.435	0.76338					18	10	2	0	0	0	0.16676	1	12801	12801		58.679	28.042	1	4015900			32594	13642	23677	23848	31766	31766					0.011846142376612079
LPQHPLVV	8	Unmodified	_LPQHPLVV_					0	0	0			REV__ENSG00000110777|ENST00000393067|POU2AF1	REV__ENSG00000110777|ENST00000393067|POU2AF1	MULTI-SECPEP	A375_MHC_IP_R2	2	452.1763916015625	2	451.776545	901.538538	-0.31968	-0.00014442	-0.042454	-1.918E-05	-0.36213	-0.0001636	451.77645343412564	75.074	0.71065	75.812	75.467	76.178	0.73751					20	13	2	0	0	0	0.94479	1	28483	28483		13.508	0	1	2882500	+		32595	17640	23678	23849	31767	31767					0.08382983002377387
LPQHQHRRRRL	11	Unmodified	_LPQHQHRRRRL_					0	0	0		ENST00000466727.1_1_10:64134143-64159545:+|nuORF	ENST00000466727.1_1_10:64134143-64159545:+|nuORF	ENST00000466727.1_1_10:64134143-64159545:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	500.0306396484375	3	499.630903	1495.87088	-0.36176	-0.00018075	-0.027745	-1.3862E-05	-0.38951	-0.00019461	499.6309133568118	142.37	0.66092	142.41	142.08	142.74	0.030731					15	12	2	0	0	0	0.73897	1	55655	55655		0.094841	0	1	1940800			32596	12264	23679	23850	31768	31768					0.14277875459470124
LPQHQHRRRRL	11	Unmodified	_LPQHQHRRRRL_					0	0	0		ENST00000466727.1_1_10:64134143-64159545:+|nuORF	ENST00000466727.1_1_10:64134143-64159545:+|nuORF	ENST00000466727.1_1_10:64134143-64159545:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	499.630903	1495.87088	-0.73516	-0.00036731	-0.10125	-5.0586E-05	-0.83641	-0.00041789	499.63107937178836	142.37	0.50536	142.37	141.98	142.49	0	-0.019096	-8.4652E-05	NaN	0.094841	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1380000			32597	12264	23679	23850							0.14277875459470124
LPQHQHRRRRL	11	Unmodified	_LPQHQHRRRRL_					0	0	0		ENST00000466727.1_1_10:64134143-64159545:+|nuORF	ENST00000466727.1_1_10:64134143-64159545:+|nuORF	ENST00000466727.1_1_10:64134143-64159545:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	499.630903	1495.87088	-0.36176	-0.00018075	-0.027745	-1.3862E-05	-0.38951	-0.00019461	499.6309133568118	142.37	0.66092	142.41	142.08	142.74	0.030731	0.019096	2.5521E-05	NaN	0.094841	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1940800			32598	12264	23679	23850							0.14277875459470124
LPQLCLRYLVS	11	Unmodified	_LPQLCLRYLVS_					0	0	0			REV__ENSG00000228594|ENST00000422725|FNDC10	REV__ENSG00000228594|ENST00000422725|FNDC10	MULTI-SECPEP	A375_MHC_IP_R1	1	653.2744140625	2	652.873391	1303.73223	-0.60017	-0.00039183	1.2567	0.00082048	0.65655	0.00042864	652.8738860035312	129.92	1.3713	129.92	129.04	130.41	0					53	26	3	0	0	0	0.99676	1	49893	49893		2.9952	0	1	13209000	+		32599	22735	23680	23851	31769	31769					0.09251151656280854
LPQPMHLLVS	10	Unmodified	_LPQPMHLLVS_					0	0	0			REV__ENSG00000150244|ENST00000417545|TRIM48	REV__ENSG00000150244|ENST00000417545|TRIM48	MULTI-MSMS	A375_MHC_IP_R1	1	567.7307739257812	2	567.820627	1133.6267	-0.55167	-0.00031325	-1.684	-0.00095622	-2.2357	-0.0012695	567.8192768383577	129.58	0.3053	129.58	129.45	129.75	0					17	5	4	0	0	0	0.7086	1	49883	49883		13.906	9.9617	1	22423000	+		32600	19708	23681	23852	31770	31770					0.06523235530653437
LPQPQPQSL	9	Unmodified	_LPQPQPQSL_					0	0	0		ENSG00000198324|ENST00000683047|PHETA1;nc|ENSG00000198324|Q8N4B1-4|PHETA1	ENSG00000198324|ENST00000683047|PHETA1	ENSG00000198324|ENST00000683047|PHETA1	MSMS	A375_MHC_IP_R1	1	504.20751953125	2	504.279649	1006.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.08	1	110.08	109.58	110.58	0								0	0	0	0.15486	1	40367	40367		7.2892	0.56607	1				32601	9255	23682	23853	31771	31771					0.04173456443231771
LPRDKPVWPPI	11	Unmodified	_LPRDKPVWPPI_					0	0	0			REV__ENSG00000166963|ENST00000300231|MAP1A	REV__ENSG00000166963|ENST00000300231|MAP1A	MULTI-SECPEP	A375_MHC_IP_R1	1	439.1281433105469	3	439.92744	1316.76049	-0.11322	-4.9809E-05	-0.009678	-4.2576E-06	-0.1229	-5.4066E-05	439.9272204259096	74.715	0.45671	74.715	74.553	75.009	0					14	8	2	0	0	0	0.99625	1	27170	27170		7.4771	0	1	1031600	+		32602	20723	23683	23854	31772	31772					0.11478217627904996
LPRDQAGP	8	Unmodified	_LPRDQAGP_					0	0	0		ENST00000291503.9_1_19:19758004-19758227:-|nuORF;ENST00000467160.1_1_19:19758004-19758388:-|nuORF	ENST00000291503.9_1_19:19758004-19758227:-|nuORF	ENST00000291503.9_1_19:19758004-19758227:-|nuORF	MSMS	A375_MHC_IP_R1	1	427.1867980957031	2	427.229959	852.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.195	1	86.195	85.695	86.695	0								0	0	0	0.16876	1	31601	31601		11.114	1.767	1				32603	10474	23684	23855	31773	31773					0.013240585491416823
LPREIDRKWYY	11	Unmodified	_LPREIDRKWYY_					0	0	0		nc|ENSG00000141314|P58872-2|RHBDL3;nc|ENSG00000141314|P58872-3|RHBDL3;ENSG00000141314|ENST00000269051|RHBDL3	nc|ENSG00000141314|P58872-2|RHBDL3	nc|ENSG00000141314|P58872-2|RHBDL3	MSMS	A375_MHC_IP_R1	1	513.6663818359375	3	513.608659	1537.80415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.561	1	52.561	52.061	53.061	0								0	0	0	0.16336	1	18697	18697		1.2148	0	1				32604	5227	23685	23856	31774	31774					0.056757823343787095
LPREIDRKWYY	11	Unmodified	_LPREIDRKWYY_					0	0	0		nc|ENSG00000141314|P58872-2|RHBDL3;nc|ENSG00000141314|P58872-3|RHBDL3;ENSG00000141314|ENST00000269051|RHBDL3	nc|ENSG00000141314|P58872-2|RHBDL3	nc|ENSG00000141314|P58872-2|RHBDL3	MSMS	A375_MHC_IP_R2	2	513.615966796875	3	513.608659	1537.80415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.645	1	50.401	49.901	50.901	0.75537								0	0	0	0.1635	1	18657	18657		0.50596	0	1				32605	5227	23685	23856	31775	31775					0.056757823343787095
LPRFHPRTWVE	11	Unmodified	_LPRFHPRTWVE_					0	0	0		ENSG00000119457|ENST00000374228|SLC46A2	ENSG00000119457|ENST00000374228|SLC46A2	ENSG00000119457|ENST00000374228|SLC46A2	MULTI-MSMS	A375_MHC_IP_R1	1	719.7890014648438	2	719.391128	1436.7677	-0.43394	-0.00031217	-0.87136	-0.00062685	-1.3053	-0.00093902	719.3898995424379	105.92	0.30518	105.92	105.76	106.06	0					12	5	3	0	0	0	0.73189	1	38913	38913		7.1017	1.699	1	1761600			32606	3596	23686	23857	31776	31776					0.06678950228297253
LPRFHPRTWVE	11	Unmodified	_LPRFHPRTWVE_					0	0	0		ENSG00000119457|ENST00000374228|SLC46A2	ENSG00000119457|ENST00000374228|SLC46A2	ENSG00000119457|ENST00000374228|SLC46A2	MULTI-MATCH	A375_MHC_IP_R2	2		2	719.391128	1436.7677	-0.72698	-0.00052299	-1.5541	-0.001118	-2.2811	-0.001641	719.8912697265652	105.2	0.4075	105.96	105.72	106.12	0.76308	0.022617	-0.00024697	NaN	7.1017	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1500800			32607	3596	23686	23857							0.06678950228297253
LPRIRRLKR	9	Unmodified	_LPRIRRLKR_					0	0	0			REV__nc|ENSG00000187122|O75093-2|SLIT1	REV__nc|ENSG00000187122|O75093-2|SLIT1	MULTI-SECPEP	A375_MHC_IP_R2	2	604.3187866210938	2	604.41474	1206.81493	-0.36401	-0.00022002	3.283	0.0019843	2.919	0.0017643	604.4182881497902	89.179	0.24863	89.911	89.786	90.035	0.7318					6	4	2	0	0	0	0.81122	1	33964	33964		0.6015	0	1	1524900	+		32608	27425	23687	23858	31777	31777					0.2197927428994717
LPRLALAQ	8	Unmodified	_LPRLALAQ_					0	0	0		nc|ENSG00000104885|Q8TEK3-1|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	MULTI-SECPEP	A375_MHC_IP_R2	2	441.657958984375	2	441.281995	880.549437	-0.47929	-0.0002115	0.07026	3.1004E-05	-0.40903	-0.0001805	441.2819541577611	72.414	0.50697	73.15	72.973	73.48	0.73541					13	9	2	0	0	0	0.92636	1	27560	27560		23.148	6.2061	1	2163100			32609	14521	23688	23859	31778	31778					0.10438385376653514
LPRLQDGRL	9	Unmodified	_LPRLQDGRL_					0	0	0		MER49_dup1305|chr21:41210187-41211078:+|3.35816670135563|0.4412608656295442|2.93|472.0|27|3|sense	MER49_dup1305|chr21:41210187-41211078:+|3.35816670135563|0.4412608656295442|2.93|472.0|27|3|sense	MER49_dup1305|chr21:41210187-41211078:+|3.35816670135563|0.4412608656295442|2.93|472.0|27|3|sense	MULTI-MSMS	A375_MHC_IP_R2	2	356.5975646972656	3	356.548852	1066.62473	-0.52597	-0.00018753	-0.40527	-0.0001445	-0.93124	-0.00033203	356.54876349054643	26.708	0.51068	27.368	27.161	27.671	0.65992					16	9	2	0	0	0	0.65748	1	8983	8983		10.8	3.6978	1	1899800			32610	14377	23689	23860	31779	31779					0.09407942837083283
LPRLTLLKW	9	Unmodified	_LPRLTLLKW_					0	0	0			REV__nc|ENSG00000186812|Q8NF99-3|ZNF397	REV__nc|ENSG00000186812|Q8NF99-3|ZNF397	MULTI-MSMS	A375_MHC_IP_R2	2	380.6011047363281	3	380.581493	1138.72265	-0.1297	-4.9362E-05	0.1115	4.2433E-05	-0.018207	-6.9292E-06	380.5815166294587	41.5	0.60998	42.274	41.997	42.607	0.77451					23	11	3	0	0	0	0.74768	1	15508	15508		2.7352	0.23671	1	5234700	+		32611	27423	23690	23861	31780	31780					0.1588375143307985
LPRNTVVLF	9	Unmodified	_LPRNTVVLF_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	MULTI-SECPEP	A375_MHC_IP_R1	1	530.2216186523438	2	529.821484	1057.62842	-0.31346	-0.00016608	-0.33937	-0.0001798	-0.65283	-0.00034588	529.8211985616352	92.594	1.2216	92.594	92.312	93.533	0					58	23	5	0	0	0	0.50702	1	33979	33979		25.399	11.493	1	33688000			32612	6936	23691	23862	31781	31781					0.10190612610927019
LPRPQPVL	8	Unmodified	_LPRPQPVL_					0	0	0		ENST00000370069.5_1_20:62220735-62220903:-|nuORF	ENST00000370069.5_1_20:62220735-62220903:-|nuORF	ENST00000370069.5_1_20:62220735-62220903:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	460.68951416015625	2	460.28982	918.565087	-0.36153	-0.00016641	-0.18156	-8.3571E-05	-0.54309	-0.00024998	460.2897928864811	42.232	0.35791	43.004	42.809	43.167	0.7724					11	6	2	0	0	0	0.86765	1	15728	15728		12.532	0	1	2301700			32613	11147	23692	23863	31782	31782					0.10254671893699197
LPRQDQEKNVP	11	Unmodified	_LPRQDQEKNVP_					0	0	0			REV__ENSG00000145220|ENST00000343470|LYAR	REV__ENSG00000145220|ENST00000343470|LYAR	MSMS	A375_MHC_IP_R2	2	661.91015625	2	662.354408	1322.69426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.37	1	101.14	100.64	101.64	0.76278								0	0	0	0.1624	1	38061	38061		6.2058	0	1		+		32614	19466	23693	23864	31783	31783					0.04582356995160808
LPRQEPASL	9	Unmodified	_LPRQEPASL_					0	0	0			REV__nc|ENSG00000184730|Q0VD83-2|APOBR	REV__nc|ENSG00000184730|Q0VD83-2|APOBR	MULTI-SECPEP	A375_MHC_IP_R1	1	506.22137451171875	2	505.785099	1009.55564	0.072439	3.6639E-05	-2.0155	-0.0010194	-1.943	-0.00098275	505.7847665424529	49.413	0.45603	49.413	49.084	49.54	0					14	8	2	0	0	0	0.67483	1	17478	17478		14.838	4.7643	1	1045000	+		32615	21836	23694	23865	31784	31784					0.05124858817509903
LPRRRGLRKKK	11	Unmodified	_LPRRRGLRKKK_					0	0	0		ENSG00000164600|ENST00000297142|NEUROD6	ENSG00000164600|ENST00000297142|NEUROD6	ENSG00000164600|ENST00000297142|NEUROD6	MSMS	A375_MHC_IP_R1	1	704.5201416015625	2	704.478403	1406.94225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.17	1	103.17	102.67	103.67	0								0	0	0	0.16353	1	37912	37912		0.35063	0.35063	1				32616	6853	23695	23866	31785	31785					0.25505995164144224
LPRRRRRRRCQ	11	Unmodified	_LPRRRRRRRCQ_					0	0	0			REV__ENSG00000171873|ENST00000379453|ADRA1D	REV__ENSG00000171873|ENST00000379453|ADRA1D	MSMS	A375_MHC_IP_R1	1	777.10400390625	2	776.968742	1551.92293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.09	1	127.09	126.59	127.59	0								0	0	0	0.16336	1	48635	48635		2.9952	2.7262	1		+		32617	21105	23696	23867	31786	31786					0.16904715601594944
LPRSREARLSY	11	Unmodified	_LPRSREARLSY_					0	0	0		ENSG00000090863|ENST00000422840|GLG1;nc|ENSG00000090863|Q92896-3|GLG1;nc|ENSG00000090863|Q92896-2|GLG1	ENSG00000090863|ENST00000422840|GLG1	ENSG00000090863|ENST00000422840|GLG1	MULTI-SECPEP	A375_MHC_IP_R2	2	449.9089660644531	3	449.921237	1346.74188	-0.51196	-0.00023034	-0.25609	-0.00011522	-0.76805	-0.00034556	449.9211597411525	34.967	0.30324	35.73	35.525	35.829	0.76338					13	5	3	0	0	0	0.99945	1	12613	12613		4.1166	4.1166	1	1775600			32618	1961	23697	23868	31787	31787					0.08238055986043946
LPRSVSLSL	9	Unmodified	_LPRSVSLSL_					0	0	0		ENST00000366481.3_1_1:248040148-248040412:+|nuORF	ENST00000366481.3_1_1:248040148-248040412:+|nuORF	ENST00000366481.3_1_1:248040148-248040412:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	486.1524658203125	2	486.297842	970.581131	-0.97463	-0.00047396	0.60839	0.00029586	-0.36624	-0.0001781	486.29804691986516	59.723	0.3548	60.47	60.249	60.603	0.74714					11	6	2	0	0	0	0.47368	1	22640	22640		10.074	0	1	747180			32619	11057	23698	23869	31788	31788					0.09466333339958055
LPRVLILHLKR	11	Unmodified	_LPRVLILHLKR_					0	0	0		nc|ENSG00000135913|Q86T82-2|USP37;ENSG00000135913|ENST00000258399|USP37	nc|ENSG00000135913|Q86T82-2|USP37	nc|ENSG00000135913|Q86T82-2|USP37	MSMS	A375_MHC_IP_R2	2	679.4598388671875	2	679.461356	1356.90816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.76	1	125.09	124.59	125.59	0.32969								0	0	0	0.16353	1	48357	48357		0.35063	0	1				32620	4726	23699	23870	31789	31789					0.24398153952529356
LPSALALSLL	10	Unmodified	_LPSALALSLL_					0	0	0		ENST00000563753.1_1_15:73884305-73925556:-|nuORF;ENST00000565325.5_1_15:73854253-73925580:-|nuORF;nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN;nc|ENSG00000156642|Q9Y639-4|NPTN;nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN	ENST00000563753.1_1_15:73884305-73925556:-|nuORF	ENST00000563753.1_1_15:73884305-73925556:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	998.4308471679688	1	997.629209	996.621933	0.052399	5.2275E-05	-0.57104	-0.00056969	-0.51864	-0.00051741	997.6285766480461	132.34	0.15457	132.53	132.4	132.56	0.18953					4	2	2	0	0	0	0.011296	1	52059	52059		123.45	0	1	4751600			32621	6201	23700	23871	31790	31790					0.12348674659574499
LPSALALSLL	10	Unmodified	_LPSALALSLL_					0	0	0		ENST00000563753.1_1_15:73884305-73925556:-|nuORF;ENST00000565325.5_1_15:73854253-73925580:-|nuORF;nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN;nc|ENSG00000156642|Q9Y639-4|NPTN;nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN	ENST00000563753.1_1_15:73884305-73925556:-|nuORF	ENST00000563753.1_1_15:73884305-73925556:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	997.629209	996.621933	-0.038241	-3.8151E-05	0.073496	7.3322E-05	0.035255	3.5171E-05	997.629270791914	132.54	0.2043	132.54	132.38	132.59	0	0.0045327	0.00049911	NaN	123.45	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3693300			32622	6201	23700	23871							0.12348674659574499
LPSEWTSVR	9	Unmodified	_LPSEWTSVR_					0	0	0		nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851|MICAL2	MULTI-SECPEP	A375_MHC_IP_R1	1	358.96563720703125	3	358.857463	1073.55056	-0.032862	-1.1793E-05	0.091169	3.2717E-05	0.058307	2.0924E-05	358.85724854996363	25.673	0.45835	25.673	25.408	25.866	0					15	8	2	0	0	0	0.55359	1	7466	7466		20.415	9.615	1	1722500			32623	14607	23701	23872	31791	31791					0.016725549548937124
LPSGDHGF	8	Unmodified	_LPSGDHGF_					0	0	0		ENST00000378203.5_1_10:15139259-15145374:+|nuORF	ENST00000378203.5_1_10:15139259-15145374:+|nuORF	ENST00000378203.5_1_10:15139259-15145374:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	415.2776794433594	2	415.195585	828.376617	-0.30663	-0.00012731	-0.13707	-5.6911E-05	-0.4437	-0.00018422	415.1954671964688	58.347	0.45768	59.096	58.779	59.237	0.74894					13	8	2	0	0	0	0.93416	1	22110	22110		20.871	7.3633	1	1652600			32624	11308	23702	23873	31792	31792					-0.044436057505663484
LPSHVIPTLKT	11	Unmodified	_LPSHVIPTLKT_					0	0	0			REV__ENST00000555391.5_1_14:104201493-104210315:-|nuORF	REV__ENST00000555391.5_1_14:104201493-104210315:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	603.7644653320312	2	603.366256	1204.71796	-0.71034	-0.0004286	-0.37166	-0.00022424	-1.082	-0.00065284	603.365131475773	149.59	1.7393	149.59	148.26	150	0					205	57	4	0	0	0	0.73795	2	56873	56873;57072		1.3295	0	1	711770	+		32625	16889	23703	23874	31793;31794	31793					0.12378822499636044
LPSHVIPTLKT	11	Unmodified	_LPSHVIPTLKT_					0	0	0			REV__ENST00000555391.5_1_14:104201493-104210315:-|nuORF	REV__ENST00000555391.5_1_14:104201493-104210315:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	603.7930297851562	2	603.366256	1204.71796	-0.71034	-0.0004286	-0.37166	-0.00022424	-1.082	-0.00065284	603.365131475773	149.59	1.7393	149.59	148.26	150	0					205	57	4	0	0	0	1.0008	1	56642	56642		1.3295	0	1	711770	+		32626	16889	23703	23874	31795	31795					0.12378822499636044
LPSHVIPTLKT	11	Unmodified	_LPSHVIPTLKT_					0	0	0			REV__ENST00000555391.5_1_14:104201493-104210315:-|nuORF	REV__ENST00000555391.5_1_14:104201493-104210315:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	603.366256	1204.71796	-0.26706	-0.00016113	-0.70531	-0.00042556	-0.97237	-0.0005867	603.3649260933701	149.49	1.7258	149.51	148.29	150.01	0.01825	-0.040143	-0.00018093	NaN	1.3295	193	63	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	604540	+		32627	16889	23703	23874							0.12378822499636044
LPSKRLPP	8	Unmodified	_LPSKRLPP_					0	0	0		ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	MULTI-MSMS	A375_MHC_IP_R2	2	454.68951416015625	2	454.28982	906.565087	-0.14553	-6.6111E-05	-0.038318	-1.7408E-05	-0.18384	-8.3518E-05	454.28972595388126	69.728	0.55926	70.462	70.233	70.793	0.73421					25	10	3	0	0	0	0.72008	1	26417	26417		28.487	0	1	9866000			32628	2670	23704	23875	31796	31796					0.10806671893703879
LPSLRETSKSI	11	Unmodified	_LPSLRETSKSI_					0	0	0			REV__ENSG00000033122|ENST00000651989|LRRC7	REV__ENSG00000033122|ENST00000651989|LRRC7	MULTI-SECPEP	A375_MHC_IP_R2	2	410.306884765625	3	410.906594	1229.69795	-0.21843	-8.9754E-05	0.98598	0.00040515	0.76755	0.00031539	410.9071150368166	35.471	0.50623	36.234	35.98	36.486	0.76338					13	9	2	0	0	0	0.99563	1	12970	12970		2.8433	0	1	1146000	+		32629	16306	23705	23876	31797	31797					0.0922902676902595
LPSPHRTSP	9	Unmodified	_LPSPHRTSP_					0	0	0		ENSG00000244607|ENST00000310232|CCDC13	ENSG00000244607|ENST00000310232|CCDC13	ENSG00000244607|ENST00000310232|CCDC13	MULTI-SECPEP	A375_MHC_IP_R2	2	496.659423828125	2	496.269616	990.524678	-0.56234	-0.00027907	-1.0459	-0.00051904	-1.6082	-0.00079811	496.2689998637207	50.978	0.25106	51.732	51.615	51.866	0.75406					6	4	2	0	0	0	0.55359	1	19228	19228		15.847	0	1	398100			32630	9823	23706	23877	31798	31798					0.029037055032858916
LPSPPLSDKY	10	Unmodified	_LPSPPLSDKY_					0	0	0			REV__ENSG00000196865|ENST00000369301|NHLRC2	REV__ENSG00000196865|ENST00000369301|NHLRC2	MULTI-MSMS	A375_MHC_IP_R1	1	559.2002563476562	2	558.800414	1115.58628	-0.41896	-0.00023411	-0.75605	-0.00042248	-1.175	-0.0006566	558.799875672992	125.76	0.30006	125.76	125.65	125.95	0					10	5	2	0	0	0	0.40101	1	47941	47941		34.102	5.0209	1	13270000	+		32631	22233	23707	23878	31799	31799					0.033105924118899566
LPSQLRLAL	9	Unmodified	_LPSQLRLAL_					0	0	0			REV__nc|ENSG00000188487|Q1MX18-3|INSC	REV__nc|ENSG00000188487|Q1MX18-3|INSC	MULTI-SECPEP	A375_MHC_IP_R2	2	506.1704406738281	2	505.821484	1009.62842	-0.68573	-0.00034686	0.10962	5.5447E-05	-0.57611	-0.00029141	505.82154143840916	48.383	0.45337	49.14	48.879	49.332	0.75737					21	8	3	0	0	0	0.50702	1	18123	18123		25.399	1.3787	1	11054000	+		32632	24866	23708	23879	31800	31800					0.1239861261092301
LPSSPTISY	9	Unmodified	_LPSSPTISY_					0	0	0			REV__SETBP1|p.P563S|2|0.27|ENSG00000152217|chr18:44951027-44951027|C/T|missense_variant	REV__SETBP1|p.P563S|2|0.27|ENSG00000152217|chr18:44951027-44951027|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	966.5877075195312	1	964.498589	963.491313	-0.15462	-0.00014913	0.22297	0.00021506	0.068358	6.5931E-05	964.498630056346	107.32	0.66137	108.07	107.74	108.4	0.75436					27	12	3	0	0	0	0.43185	1	40558	40558		23.148	1.4018	1	9204600	+		32633	27947	23709	23880	31801	31801					0.00810658940713438
LPSSPTISY	9	Unmodified	_LPSSPTISY_					0	0	0			REV__SETBP1|p.P563S|2|0.27|ENSG00000152217|chr18:44951027-44951027|C/T|missense_variant	REV__SETBP1|p.P563S|2|0.27|ENSG00000152217|chr18:44951027-44951027|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		1	964.498589	963.491313	0.34671	0.0003344	0.26501	0.0002556	0.61171	0.00059	964.4986099237939	108.04	0.66028	108.04	107.75	108.41	0	-0.015803	2.0502E-05	NaN	23.148	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10516000	+		32634	27947	23709	23880							0.00810658940713438
LPSSPTISY	9	Unmodified	_LPSSPTISY_					0	0	0			REV__SETBP1|p.P563S|2|0.27|ENSG00000152217|chr18:44951027-44951027|C/T|missense_variant	REV__SETBP1|p.P563S|2|0.27|ENSG00000152217|chr18:44951027-44951027|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	964.498589	963.491313	-0.15462	-0.00014913	0.22297	0.00021506	0.068358	6.5931E-05	964.498630056346	107.32	0.66137	108.07	107.74	108.4	0.75436	0.015803	-2.0041E-05	NaN	23.148	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9204600	+		32635	27947	23709	23880							0.00810658940713438
LPSTFTSKF	9	Unmodified	_LPSTFTSKF_					0	0	0		ENSG00000205784|ENST00000650722|ARRDC5;nc|ENSG00000205784|A6NEK1|ARRDC5	ENSG00000205784|ENST00000650722|ARRDC5	ENSG00000205784|ENST00000650722|ARRDC5	MSMS	A375_MHC_IP_R1	1	514.178955078125	2	514.276575	1026.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.43	1	103.43	102.93	103.93	0								0	0	0	0.12568	1	37991	37991		34.102	5.6156	1				32636	9527	23710	23881	31802	31802					0.026389382117031346
LPSTGSTTL	9	Unmodified	_LPSTGSTTL_					0	0	0		nc|ENSG00000101639|Q8TEP8-2|CEP192;nc|ENSG00000101639|Q8TEP8-1|CEP192;ENSG00000101639|ENST00000506447|CEP192;ENST00000513432.5_1_18:13030586-13057756:+|nuORF	nc|ENSG00000101639|Q8TEP8-2|CEP192	nc|ENSG00000101639|Q8TEP8-2|CEP192	MULTI-SECPEP	A375_MHC_IP_R1	1	439.1281433105469	2	438.737283	875.460012	-0.12835	-5.6313E-05	-0.15671	-6.8756E-05	-0.28506	-0.00012507	438.7371896304646	74.387	0.45731	74.387	74.146	74.604	0					11	8	2	0	0	0	0.3243	1	27170	27170		36.044	0	1	1185900			32637	2316	23711	23882	31803	31803					0.01730085906626755
LPSTGSTTL	9	Unmodified	_LPSTGSTTL_					0	0	0		nc|ENSG00000101639|Q8TEP8-2|CEP192;nc|ENSG00000101639|Q8TEP8-1|CEP192;ENSG00000101639|ENST00000506447|CEP192;ENST00000513432.5_1_18:13030586-13057756:+|nuORF	nc|ENSG00000101639|Q8TEP8-2|CEP192	nc|ENSG00000101639|Q8TEP8-2|CEP192	MULTI-SECPEP	A375_MHC_IP_R2	2	439.1372375488281	2	438.737283	875.460012	-0.26866	-0.00011787	-0.094191	-4.1325E-05	-0.36285	-0.0001592	438.73717107775536	73.636	0.51044	74.371	74.091	74.602	0.73541					15	9	2	0	0	0	0.43707	1	27970	27970		28.487	0	1	1851200			32638	2316	23711	23882	31804	31804					0.01730085906626755
LPTGPVLRVGP	11	Unmodified	_LPTGPVLRVGP_					0	0	0		ENST00000478749.5_1_1:12079602-12082291:+|nuORF	ENST00000478749.5_1_1:12079602-12082291:+|nuORF	ENST00000478749.5_1_1:12079602-12082291:+|nuORF	MSMS	A375_MHC_IP_R1	1	369.29730224609375	3	369.229119	1104.66553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.545	1	23.545	23.045	24.045	0								0	0	0	0.16297	1	6484	6484		1.3296	0.11481	1				32639	12467	23712	23883	31805	31805					0.11738284156695045
LPTHTQPNL	9	Unmodified	_LPTHTQPNL_					0	0	0		RBM33|p.E1103Gfs*12|1|0.21|ENSG00000184863|chr7:155766588-155766588|A/-|frameshift_variant;ENSG00000184863|ENST00000401878|RBM33;ENST00000307403.6_1_7:155500050-155531112:+|nuORF	RBM33|p.E1103Gfs*12|1|0.21|ENSG00000184863|chr7:155766588-155766588|A/-|frameshift_variant	RBM33|p.E1103Gfs*12|1|0.21|ENSG00000184863|chr7:155766588-155766588|A/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	510.6921081542969	2	510.777274	1019.53999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.661	1	69.661	69.161	70.161	0								0	0	0	0.14767	1	25283	25283		25.399	4.9457	1				32640	8615	23713	23884	31806	31806					0.031005723004682295
LPTIQGQPL	9	Unmodified	_LPTIQGQPL_					0	0	0		ENST00000566774.1_1_16:68264768-68266536:-|nuORF	ENST00000566774.1_1_16:68264768-68266536:-|nuORF	ENST00000566774.1_1_16:68264768-68266536:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	483.3356628417969	2	483.784567	965.554582	-0.50921	-0.00024635	-0.0063348	-3.0647E-06	-0.51554	-0.00024941	483.78453146645785	84.745	0.46211	84.745	84.442	84.904	0					11	8	2	0	0	0	0.67483	1	30979	30979		14.838	12.994	1	838300			32641	13563	23714	23885	31807	31807					0.07042644448608826
LPTLLSYHLSL	11	Unmodified	_LPTLLSYHLSL_					0	0	0		ENST00000334529.9_1_3:112218294-112218402:-|nuORF	ENST00000334529.9_1_3:112218294-112218402:-|nuORF	ENST00000334529.9_1_3:112218294-112218402:-|nuORF	MSMS	A375_MHC_IP_R1	1	628.8687133789062	2	628.866089	1255.71762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.952	1	77.952	77.452	78.452	0								0	0	0	0.1624	1	28451	28451		6.2058	0	1				32642	10796	23715	23886	31808	31808					0.09999402779794764
LPTNLDRTS	9	Unmodified	_LPTNLDRTS_					0	0	0		ENST00000337003.4_1_10:105154056-105156172:-|nuORF;ENST00000369825.5_1_10:105154056-105155557:-|nuORF	ENST00000337003.4_1_10:105154056-105156172:-|nuORF	ENST00000337003.4_1_10:105154056-105156172:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	509.6896667480469	2	508.772188	1015.52982	-0.48829	-0.00024843	-0.44753	-0.00022769	-0.93582	-0.00047612	508.77191617722235	58.807	0.61145	58.807	58.531	59.143	0					21	11	3	0	0	0	0.27715	1	21179	21179		32.305	1.6689	1	7072400			32643	10824	23716	23887	31809	31809					0.022679645752418764
LPTNLDRTS	9	Unmodified	_LPTNLDRTS_					0	0	0		ENST00000337003.4_1_10:105154056-105156172:-|nuORF;ENST00000369825.5_1_10:105154056-105155557:-|nuORF	ENST00000337003.4_1_10:105154056-105156172:-|nuORF	ENST00000337003.4_1_10:105154056-105156172:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	509.1714172363281	2	508.772188	1015.52982	-1.0092	-0.00051343	-0.54433	-0.00027694	-1.5535	-0.00079037	508.7718191963993	58.047	0.60619	58.796	58.477	59.083	0.74895					18	10	3	0	0	0	0.22528	2	21962	21926;21962		36.127	5.4905	1	5569300			32644	10824	23716	23887	31810;31811	31811					0.022679645752418764
LPTQKSAPTL	10	Unmodified	_LPTQKSAPTL_					0	0	0			REV__ENSG00000163625|ENST00000295888|WDFY3	REV__ENSG00000163625|ENST00000295888|WDFY3	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6492919921875	2	528.308406	1054.60226	-0.59017	-0.00031179	0.30753	0.00016247	-0.28264	-0.00014932	528.3087443561409	81.855	0.90944	82.598	81.826	82.735	0.74293					18	17	2	0	0	0	0.83086	1	31008	31008		10.824	5.0635	1	1099300	+		32645	20386	23717	23888	31812	31812					0.07714298648807016
LPTSKPMV	8	Unmodified	_LPTSKPMV_					0	0	0			REV__tr|U7T5R0|U7T5R0_FUSNUthreonineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00142PE=4SV=1	REV__tr|U7T5R0|U7T5R0_FUSNUthreonineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00142PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	873.6920776367188	1	872.491001	871.483725	-0.54442	-0.000475	-3.0513	-0.0026623	-3.5958	-0.0031373	872.4888498272832	126.77	0.30446	127.03	126.85	127.16	0.26593					8	5	2	0	0	0	0.70783	1	49661	49661		32.305	3.8186	1	9332400	+		32646	28833	23718	23889	31813	31813					0.042842281394541715
LPTVTSFMSQF	11	Unmodified	_LPTVTSFMSQF_					0	0	0			REV__PLXNC1|p.V1203Afs*40|1|0.34|ENSG00000136040|chr12:94279482-94279482|T/-|frameshift_variant	REV__PLXNC1|p.V1203Afs*40|1|0.34|ENSG00000136040|chr12:94279482-94279482|T/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	629.2529907226562	2	629.312832	1256.61111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.315	1	83.315	82.815	83.815	0								0	0	0	0.16108	1	30485	30485		13.042	0	1		+		32647	27812	23719	23890	31814	31814					-0.006930957770237001
LPVGCVRIIPY	11	Unmodified	_LPVGCVRIIPY_					0	0	0		ENST00000427497.3_1_17:17110364-17131447:-|nuORF;ENSG00000154803|ENST00000285071|FLCN	ENST00000427497.3_1_17:17110364-17131447:-|nuORF;ENSG00000154803|ENST00000285071|FLCN	ENSG00000154803|ENST00000285071|FLCN	MULTI-MSMS	A375_MHC_IP_R2	2	410.9740295410156	3	410.57401	1228.7002	0.15053	6.1805E-05	0.054574	2.2407E-05	0.20511	8.4212E-05	410.5740292717124	135.5	0.35472	135.64	135.51	135.86	0.13901					11	6	2	0	0	0	0.73779	1	53287	53287		0.50596	0	1	2128900			32648	11821;6110	23720	23891	31815	31815					0.09499783973160447
LPVGHSPLK	9	Unmodified	_LPVGHSPLK_					0	0	0			REV__ANAPC5|p.E743K|1|0.24|ENSG00000089053|chr12:121308521-121308521|C/T|missense_variant	REV__ANAPC5|p.E743K|1|0.24|ENSG00000089053|chr12:121308521-121308521|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	474.68719482421875	2	474.287277	946.560001	-0.30494	-0.00014463	-0.17466	-8.284E-05	-0.4796	-0.00022747	474.28710995744837	35.804	0.56021	35.804	35.573	36.133	0					25	10	3	0	0	0	0.39388	1	11929	11929		32.305	5.4218	1	8243800	+		32649	15393	23721	23892	31816	31816					0.08458368031097052
LPVGHSPLK	9	Unmodified	_LPVGHSPLK_					0	0	0			REV__ANAPC5|p.E743K|1|0.24|ENSG00000089053|chr12:121308521-121308521|C/T|missense_variant	REV__ANAPC5|p.E743K|1|0.24|ENSG00000089053|chr12:121308521-121308521|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	474.686767578125	2	474.287277	946.560001	-0.7563	-0.0003587	0.090278	4.2818E-05	-0.66602	-0.00031589	474.28729420339016	34.863	0.60518	35.627	35.375	35.98	0.76338					26	11	4	0	0	0	0.28475	1	12608	12608		48.346	12.219	1	5255200	+		32650	15393	23721	23892	31817	31817					0.08458368031097052
LPVGSTTN	8	Unmodified	_LPVGSTTN_					0	0	0		nc|ENSG00000148516|P37275-3|ZEB1;nc|ENSG00000148516|P37275-4|ZEB1;nc|ENSG00000148516|P37275-5|ZEB1;ENST00000488625.6_1_10:31676182-31816189:+|nuORF;nc|ENSG00000148516|P37275|ZEB1;ENSG00000148516|ENST00000424869|ZEB1	nc|ENSG00000148516|P37275-3|ZEB1	nc|ENSG00000148516|P37275-3|ZEB1	MULTI-SECPEP	A375_MHC_IP_R1	1	788.8131713867188	1	788.414859	787.407583	-0.79741	-0.00062869	-0.80585	-0.00063535	-1.6033	-0.001264	788.4139957964917	147.51	0.25412	147.51	147.41	147.67	0					35	24	2	0	0	0	0.972	1	56356	56356		0.6015	0	1	172250			32651	5749	23722	23893	31818	31818					0.00537547563658336
LPVGSTTN	8	Unmodified	_LPVGSTTN_					0	0	0		nc|ENSG00000148516|P37275-3|ZEB1;nc|ENSG00000148516|P37275-4|ZEB1;nc|ENSG00000148516|P37275-5|ZEB1;ENST00000488625.6_1_10:31676182-31816189:+|nuORF;nc|ENSG00000148516|P37275|ZEB1;ENSG00000148516|ENST00000424869|ZEB1	nc|ENSG00000148516|P37275-3|ZEB1	nc|ENSG00000148516|P37275-3|ZEB1	MULTI-MATCH	A375_MHC_IP_R2	2		1	788.414859	787.407583	-0.79516	-0.00062692	-0.55714	-0.00043926	-1.3523	-0.0010662	788.4142656821597	147.5	0.19232	147.52	147.45	147.64	0.019913	0.007434	9.7832E-05	NaN	0.6015	27	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116130			32652	5749	23722	23893							0.00537547563658336
LPVHLLGDKQ	10	Unmodified	_LPVHLLGDKQ_					0	0	0		ENST00000290317.9_1_20:45242167-45298745:-|nuORF	ENST00000290317.9_1_20:45242167-45298745:-|nuORF	ENST00000290317.9_1_20:45242167-45298745:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	560.7291259765625	2	560.329673	1118.64479	-0.84102	-0.00047125	0.25518	0.00014299	-0.58583	-0.00032826	560.3297007787207	142.9	0.45428	142.9	142.59	143.04	0					15	8	2	0	0	0	0.71944	1	54847	54847		3.5965	0.31518	1	667840			32653	10469	23723	23894	31819	31819					0.09021693777026485
LPVIRHKRFPW	11	Unmodified	_LPVIRHKRFPW_					0	0	0			REV__ENST00000488408.1_1_3:153741662-153741884:+|nuORF	REV__ENST00000488408.1_1_3:153741662-153741884:+|nuORF	MSMS	A375_MHC_IP_R1	1	724.7310180664062	2	724.935506	1447.85646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.65	1	102.65	102.15	103.15	0								0	0	0	0.16331	1	37727	37727		1.4819	0.15237	1		+		32654	25349	23724	23895	31820	31820					0.15044410258633434
LPVLEAPLHT	10	Unmodified	_LPVLEAPLHT_					0	0	0		ENST00000330292.4_17:80208760-80208973:+|nuORF	ENST00000330292.4_17:80208760-80208973:+|nuORF	ENST00000330292.4_17:80208760-80208973:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1090.0244140625	1	1089.63027	1088.623	0.13961	0.00015212	-2.2186	-0.0024174	-2.0789	-0.0022653	1089.6261641480326	125.89	0.86029	126.18	125.72	126.58	0.2951					43	16	4	0	0	0	0.70146	1	49130	49130		11.64	0.81637	1	26093000			32655	10759	23725	23896	31821	31821					0.08222889028456848
LPVLLTSLQH	10	Unmodified	_LPVLLTSLQH_					0	0	0			REV__ENST00000532414.2_1_1:156044763-156044958:-|nuORF	REV__ENST00000532414.2_1_1:156044763-156044958:-|nuORF	MSMS	A375_MHC_IP_R2	2	560.8001708984375	2	560.839874	1119.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.96	1	141.99	141.49	142.49	0.030731								0	0	0	0.15531	1	55509	55509		3.5965	0.31518	1		+		32656	25867	23726	23897	31822	31822					0.11014864436833705
LPVLWPPLR	9	Unmodified	_LPVLWPPLR_					0	0	0			REV__ENSG00000172901|ENST00000357872|LVRN	REV__ENSG00000172901|ENST00000357872|LVRN	MULTI-SECPEP	A375_MHC_IP_R1	1	363.62542724609375	3	364.230572	1089.66989	0.0778	2.8337E-05	1.9616	0.00071446	2.0394	0.0007428	364.23123341456096	25.588	0.40641	25.588	25.46	25.866	0					10	7	2	0	0	0	0.75519	1	7494	7494		6.6304	0	1	2694300	+		32657	21179	23727	23898	31823	31823					0.12863793370252097
LPVPTALTV	9	Unmodified	_LPVPTALTV_					0	0	0		nc|ENSG00000125319|Q8N3J3-3|HROB;ENSG00000125319|ENST00000585683|HROB;nc|ENSG00000125319|Q8N3J3|HROB	nc|ENSG00000125319|Q8N3J3-3|HROB	nc|ENSG00000125319|Q8N3J3-3|HROB	MULTI-MSMS	A375_MHC_IP_R2	2	456.1841735839844	2	455.784036	909.553519	-0.22321	-0.00010174	0.11562	5.2699E-05	-0.10759	-4.9039E-05	455.7840205058142	108.14	1.8377	108.89	108.3	110.14	0.75436					104	35	4	0	0	0	0.011892	1	40719	40719		93.883	4.4566	1	84057000			32658	3949	23728	23899	31824	31824					0.09512430079689693
LPVQKLEKV	9	Unmodified	_LPVQKLEKV_					0	0	0		ENSG00000149346|ENST00000334534|SLX4IP	ENSG00000149346|ENST00000334534|SLX4IP	ENSG00000149346|ENST00000334534|SLX4IP	MULTI-SECPEP	A375_MHC_IP_R2	2	351.2730407714844	3	351.893737	1052.65938	-0.49732	-0.000175	-0.78865	-0.00027752	-1.286	-0.00045252	351.8933152609003	18.905	0.13086	19.508	19.452	19.583	0.60308					4	2	2	0	0	0	0.73008	1	5665	5665		8.1555	0	1	2514400			32659	5802	23729	23900	31825	31825					0.13515765925171763
LPVREQEW	8	Unmodified	_LPVREQEW_					0	0	0			REV__ENST00000469239.1_1_1:151271282-151274337:-|nuORF	REV__ENST00000469239.1_1_1:151271282-151274337:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	352.27825927734375	3	352.853941	1055.53999	-0.07807	-2.7547E-05	0.3307	0.00011669	0.25263	8.9142E-05	352.8540178540731	60.164	0.45792	60.164	59.905	60.363	0					15	8	2	0	0	0	0.972	1	21581	21581		1.6526	0.17072	1	1227200	+		32660	19354	23730	23901	31826	31826					0.01444572300465552
LPVSGRDVAL	10	Unmodified	_LPVSGRDVAL_					0	0	0			REV__ENSG00000086570|ENST00000261800|FAT2	REV__ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	A375_MHC_IP_R1	1	514.2005615234375	2	513.800749	1025.58694	-0.4355	-0.00022376	-0.045401	-2.3327E-05	-0.4809	-0.00024709	513.8007020707355	33.773	0.50425	33.773	33.547	34.052	0					24	9	4	0	0	0	0.60238	1	11033	11033		39.95	1.9757	1	21258000	+		32661	16857	23731	23902	31827	31827					0.07517431851601941
LPVSQRNQ	8	Unmodified	_LPVSQRNQ_					0	0	0		ENSG00000107863|ENST00000396432|ARHGAP21;nc|ENSG00000107863|Q5T5U3-3|ARHGAP21	ENSG00000107863|ENST00000396432|ARHGAP21	ENSG00000107863|ENST00000396432|ARHGAP21	MULTI-MSMS	A375_MHC_IP_R2	2	471.66131591796875	2	471.261791	940.509028	-0.69522	-0.00032763	-0.84046	-0.00039607	-1.5357	-0.00072371	471.26141940329245	41.539	0.61106	42.314	42.047	42.659	0.77451					23	11	3	0	0	0	0.77515	1	15466	15466		12.532	0	1	4237100			32662	2765	23732	23903	31828	31828					0.036394189862335224
LPVSQRNQ	8	Unmodified	_LPVSQRNQ_					0	0	0		ENSG00000107863|ENST00000396432|ARHGAP21;nc|ENSG00000107863|Q5T5U3-3|ARHGAP21	ENSG00000107863|ENST00000396432|ARHGAP21	ENSG00000107863|ENST00000396432|ARHGAP21	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	471.261791	940.509028	-0.69522	-0.00032763	-0.84046	-0.00039607	-1.5357	-0.00072371	471.26141940329245	41.539	0.61106	42.314	42.047	42.659	0.77451	-0.012968	0.00027048	NaN	12.532	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4237100			32663	2765	23732	23903							0.036394189862335224
LPVTTKATRY	10	Unmodified	_LPVTTKATRY_					0	0	0			REV__ENST00000460467.1_1_3:17051560-17052429:+|nuORF	REV__ENST00000460467.1_1_3:17051560-17052429:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	384.5933532714844	3	383.892396	1148.65536	-0.37741	-0.00014488	0.027072	1.0393E-05	-0.35034	-0.00013449	383.89243112986077	23.728	0.81509	24.358	24.129	24.944	0.63014					33	15	5	0	0	0	0.71811	1	7589	7589		4.1895	1.7547	1	67111000	+		32664	24961	23733	23904	31829	31829					0.08697676431461332
LPWMIVLF	8	Unmodified	_LPWMIVLF_					0	0	0		ENSG00000146072|ENST00000296861|TNFRSF21	ENSG00000146072|ENST00000296861|TNFRSF21	ENSG00000146072|ENST00000296861|TNFRSF21	MULTI-MSMS	A375_MHC_IP_R2	2	510.1924743652344	2	509.793349	1017.57215	-1.0316	-0.00052592	-0.18652	-9.5084E-05	-1.2181	-0.000621	509.79315725500925	38.808	0.46134	39.582	39.351	39.812	0.77451					14	8	2	0	0	0	0.73552	1	14337	14337		24.21	7.1234	1	4236300			32665	5603	23734	23905	31830	31830					0.06406268449916297
LPWPVPWDMIF	11	Unmodified	_LPWPVPWDMIF_					0	0	0		ENST00000557584.5_1_14:74417012-74426158:+|nuORF	ENST00000557584.5_1_14:74417012-74426158:+|nuORF	ENST00000557584.5_1_14:74417012-74426158:+|nuORF	MSMS	A375_MHC_IP_R1	1	467.6150207519531	3	467.573898	1399.69987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.704	1	19.704	19.204	20.204	0								0	0	0	0.16224	1	4951	4951		7.0371	0.80273	1				32666	13454	23735	23906	31831	31831					0.01600364253272346
LPYGGGCC	8	Unmodified	_LPYGGGCC_					0	0	0		ENST00000360467.5_1_13:110960233-110960438:+|nuORF	ENST00000360467.5_1_13:110960233-110960438:+|nuORF	ENST00000360467.5_1_13:110960233-110960438:+|nuORF	MSMS	A375_MHC_IP_R1	1	385.134521484375	2	385.154017	768.293481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.946	1	34.946	34.446	35.446	0								0	0	0	0.16876	1	11574	11574		2.8892	2.0956	1				32667	11029	23736	23907	31832	31832					-0.09993381794436118
LPYGGGCC	8	Unmodified	_LPYGGGCC_					0	0	0		ENST00000360467.5_1_13:110960233-110960438:+|nuORF	ENST00000360467.5_1_13:110960233-110960438:+|nuORF	ENST00000360467.5_1_13:110960233-110960438:+|nuORF	MSMS	A375_MHC_IP_R2	2	385.1341552734375	2	385.154017	768.293481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.149	1	34.902	34.402	35.402	0.75225								0	0	0	0.16876	1	12289	12289		2.8892	0	1				32668	11029	23736	23907	31833	31833					-0.09993381794436118
LPYHRRFFLKR	11	Unmodified	_LPYHRRFFLKR_					0	0	0			REV__ENST00000490566.1_1_2:218669184-218678576:-|nuORF	REV__ENST00000490566.1_1_2:218669184-218678576:-|nuORF	MSMS	A375_MHC_IP_R1	1	767.108154296875	2	766.951687	1531.88882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.6	1	89.6	89.1	90.1	0								0	0	0	0.16331	1	32916	32916		1.4819	0.28856	1		+		32669	16728	23737	23908	31834	31834					0.14415197661628554
LPYHRRFFLKR	11	Unmodified	_LPYHRRFFLKR_					0	0	0			REV__ENST00000490566.1_1_2:218669184-218678576:-|nuORF	REV__ENST00000490566.1_1_2:218669184-218678576:-|nuORF	MSMS	A375_MHC_IP_R1	1	767.1631469726562	2	766.951687	1531.88882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.689	1	89.689	89.189	90.189	0								0	0	0	0.16297	1	32950	32950		3.2813	1.9518	1		+		32670	16728	23737	23908	31835	31835					0.14415197661628554
LPYPIETLIF	10	Unmodified	_LPYPIETLIF_					0	0	0			REV__OR10G3|p.G16E|1|0.5|ENSG00000169208|chr14:21570698-21570698|C/T|missense_variant	REV__OR10G3|p.G16E|1|0.5|ENSG00000169208|chr14:21570698-21570698|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	402.6393737792969	3	402.565397	1204.67436	-0.28205	-0.00011354	0.16757	6.7456E-05	-0.11448	-4.6087E-05	402.8995805834648	19.437	0.75876	20.04	19.683	20.442	0.60308					42	14	4	0	0	0	0.70329	1	6036	6036		6.1918	2.3155	1	6034900	+		32671	27647	23738	23909	31836	31836					0.08021213002530203
LPYSILMPL	9	Unmodified	_LPYSILMPL_					0	0	0			REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1047.173828125	1	1046.59547	1045.58819	-0.14479	-0.00015154	0.18618	0.00019486	0.041389	4.3318E-05	1046.5956060264614	136.22	0.30777	136.22	136.1	136.41	0					12	5	4	0	0	0	0.60012	1	52530	52530		24.674	0	1	7103900	+		32672	24594	23739	23910	31837	31837					0.06721929896161782
LPYSILMPL	9	Unmodified	_LPYSILMPL_					0	0	0			REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	1046.59547	1045.58819	0.20595	0.00021555	-0.59377	-0.00062144	-0.38782	-0.00040589	1046.5947265963928	136.09	0.25467	136.2	136.04	136.3	0.11134	-0.011278	-0.00047046	NaN	24.674	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5088400	+		32673	24594	23739	23910							0.06721929896161782
LPYSLLPFL	9	Unmodified	_LPYSLLPFL_					0	0	0		ENST00000601799.5_1_19:57742659-57743507:+|nuORF	ENST00000601799.5_1_19:57742659-57743507:+|nuORF	ENST00000601799.5_1_19:57742659-57743507:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1062.0284423828125	1	1062.6234	1061.61612	-0.12442	-0.00013221	3.4507	0.0036668	3.3263	0.0035346	1062.630115636672	133.33	0.20491	133.33	133.2	133.41	0					5	3	2	0	0	0	0.69504	1	51401	51401		7.9102	0	1	1704200			32674	13875	23740	23911	31838	31838					0.08777576147895161
LPYTTGKLPY	10	Unmodified	_LPYTTGKLPY_					0	0	0		nc|ENSG00000049540|P15502-7|ELN;nc|ENSG00000049540|P15502-6|ELN;nc|ENSG00000049540|P15502-12|ELN;nc|ENSG00000049540|P15502-13|ELN;nc|ENSG00000049540|P15502-5|ELN;ENSG00000049540|ENST00000252034|ELN;nc|ENSG00000049540|P15502-1|ELN;nc|ENSG00000049540|P15502-4|ELN;nc|ENSG00000049540|P15502-10|ELN;nc|ENSG00000049540|P15502|ELN;nc|ENSG00000049540|P15502-9|ELN	nc|ENSG00000049540|P15502-7|ELN	nc|ENSG00000049540|P15502-7|ELN	MSMS	A375_MHC_IP_R1	1	576.6679077148438	2	576.818607	1151.62266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.739	1	60.739	60.239	61.239	0								0	0	0	0.15283	1	21873	21873		7.9102	0	1				32675	1221	23741	23912	31839	31839					0.05291469308622254
LPYVYKFRF	9	Unmodified	_LPYVYKFRF_					0	0	0			REV__CON__Q1A7A4	REV__CON__Q1A7A4	MSMS	A375_MHC_IP_R1	1	616.9273071289062	2	616.844959	1231.67537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.5	1	116.5	116	117	0								0	0	0	0.15486	1	42733	42733		8.5933	1.8701	1		+	+	32676	15871	23742	23913	31840	31840					0.06879472162063394
LPYYYLSPD	9	Unmodified	_LPYYYLSPD_					0	0	0		nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5	nc|ENSG00000012779|P09917-2|ALOX5	nc|ENSG00000012779|P09917-2|ALOX5	MULTI-SECPEP	A375_MHC_IP_R2	2	378.26092529296875	3	377.518336	1129.53318	-0.27872	-0.00010522	0.48902	0.00018462	0.2103	7.9393E-05	377.51764710443933	34.014	0.25328	34.766	34.55	34.803	0.75225					10	4	3	0	0	0	0.74651	1	12218	12218		5.2969	0.76802	1	2561700			32677	1012	23743	23914	31841	31841					-0.026407853707723916
LQAAHTLA	8	Unmodified	_LQAAHTLA_					0	0	0		ENSG00000134917|ENST00000257359|ADAMTS8;ADAMTS8|p.E364K|1|0.29|ENSG00000134917|chr11:130416946-130416946|C/T|missense_variant	ENSG00000134917|ENST00000257359|ADAMTS8	ENSG00000134917|ENST00000257359|ADAMTS8	MULTI-SECPEP	A375_MHC_IP_R1	1	412.459716796875	2	412.734877	823.455202	0.34413	0.00014203	0.90592	0.0003739	1.25	0.00051594	412.7346774838219	37.55	0.25629	37.55	37.402	37.658	0					7	4	2	0	0	0	0.8957	1	12631	12631		21.747	2.4897	1	818360			32678	4627	23744	23915	31842	31842					0.036412465545254236
LQAALEKPL	9	Unmodified	_LQAALEKPL_					0	0	0			REV__CON__Q0VCM5	REV__CON__Q0VCM5	MULTI-SECPEP	A375_MHC_IP_R2	2	492.1819152832031	2	491.800217	981.585882	-0.52162	-0.00025653	0.070017	3.4434E-05	-0.4516	-0.0002221	491.8000579864642	76.786	0.40512	77.527	77.25	77.655	0.74052					12	7	2	0	0	0	0.28475	1	29056	29056		39.957	19.504	1	948760	+	+	32679	15870	23745	23916	31843	31843					0.09435217482700864
LQAARLERQ	9	Unmodified	_LQAARLERQ_					0	0	0			REV__ENST00000564284.1_1_16:28841101-28842119:+|nuORF	REV__ENST00000564284.1_1_16:28841101-28842119:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	362.27764892578125	3	362.21224	1083.61489	-0.19088	-6.9137E-05	2.8786	0.0010427	2.6877	0.00097353	362.2131273562983	48.67	0.55907	49.427	49.08	49.639	0.75736					19	10	2	0	0	0	0.61998	1	18305	18305		9.544	0	1	1799500	+		32680	20859	23746	23917	31844	31844					0.07642754831704224
LQAARQLL	8	Unmodified	_LQAARQLL_					0	0	0		ENSG00000128573|ENST00000350908|FOXP2;nc|ENSG00000128573|O15409-9|FOXP2;nc|ENSG00000128573|O15409-4|FOXP2;nc|ENSG00000128573|O15409-8|FOXP2;nc|ENSG00000128573|O15409-7|FOXP2;nc|ENSG00000128573|O15409-6|FOXP2;nc|ENSG00000128573|O15409-5|FOXP2;ENST00000459666.5_1_7:114066566-114268765:+|nuORF	ENSG00000128573|ENST00000350908|FOXP2;nc|ENSG00000128573|O15409-5|FOXP2	nc|ENSG00000128573|O15409-5|FOXP2	MULTI-MSMS	A375_MHC_IP_R1	1	457.18499755859375	2	456.784902	911.55525	-0.43515	-0.00019877	0.3983	0.00018194	-0.036848	-1.6832E-05	456.78490783742166	52.948	0.50534	52.948	52.694	53.199	0					18	9	3	0	0	0	0.72008	1	18900	18900		28.487	0	1	2366500			32681	4146;12152	23747	23918	31845	31845					0.09593483888329501
LQAKNFGP	8	Unmodified	_LQAKNFGP_					0	0	0			REV__ENST00000520731.1_1_5:153832004-153835585:+|nuORF	REV__ENST00000520731.1_1_5:153832004-153835585:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	438.29461669921875	2	437.742702	873.470852	-0.29467	-0.00012899	-1.5603	-0.00068301	-1.855	-0.00081199	437.7439591564741	31.116	0.75993	31.116	30.603	31.363	0					16	14	2	0	0	0	0.97144	1	9854	9854		9.3474	4.5914	1	874750	+		32682	20500	23748	23919	31846	31846					0.029055330715777927
LQAQYKDIWTI	11	Unmodified	_LQAQYKDIWTI_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	A375_MHC_IP_R1	1	459.65606689453125	3	460.25036	1377.72925	-0.45344	-0.0002087	-3.2872	-0.0015129	-3.7407	-0.0017216	460.2494315944327	36.495	0.45872	36.495	36.133	36.592	0					11	8	2	0	0	0	0.9907	1	12133	12133		9.2438	5.6567	1	1233900	+		32683	22253	23749	23920	31847	31847					0.05549599803134697
LQCEQLSQF	9	Unmodified	_LQCEQLSQF_					0	0	0			REV__ENST00000482378.6_2_12:56226965-56228769:+|nuORF	REV__ENST00000482378.6_2_12:56226965-56228769:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	366.1197509765625	3	365.842825	1094.50665	0.07404	2.7087E-05	0.12463	4.5593E-05	0.19867	7.2681E-05	365.8428582157316	25.486	1.3697	25.486	25.154	26.524	0					37	26	2	0	0	0	0.61998	1	7615	7615		9.544	4.4965	1	4077500	+		32684	25279	23750	23921	31848	31848					-0.03682797533747362
LQCEQLSQF	9	Unmodified	_LQCEQLSQF_					0	0	0			REV__ENST00000482378.6_2_12:56226965-56228769:+|nuORF	REV__ENST00000482378.6_2_12:56226965-56228769:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	365.842825	1094.50665	-0.33489	-0.00012252	0.11492	4.2044E-05	-0.21997	-8.0475E-05	365.84275591100635	24.916	0.76311	25.559	25.161	25.924	0.64368	0.03678	-6.9784E-06	NaN	9.544	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2528900	+		32685	25279	23750	23921							-0.03682797533747362
LQCKYMKWYE	10	Unmodified	_LQCKYMKWYE_					0	0	0			REV__ENSG00000150630|ENST00000618562|VEGFC	REV__ENSG00000150630|ENST00000618562|VEGFC	MSMS	A375_MHC_IP_R1	1	696.4220581054688	2	696.327959	1390.64136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.708	1	58.708	58.208	59.208	0								0	0	0	0.14983	1	21093	21093		18.146	1.9972	1		+		32686	19719	23751	23922	31849	31849					-0.03833060383499287
LQCTQYCYI	9	Unmodified	_LQCTQYCYI_					0	0	0		nc|ENSG00000206561|Q9Y215-3|COLQ;nc|ENSG00000206561|Q9Y215-2|COLQ;nc|ENSG00000206561|Q9Y215-5|COLQ;nc|ENSG00000206561|Q9Y215-4|COLQ;ENSG00000206561|ENST00000383788|COLQ	nc|ENSG00000206561|Q9Y215-3|COLQ	nc|ENSG00000206561|Q9Y215-3|COLQ	MULTI-SECPEP	A375_MHC_IP_R1	1	567.2394409179688	2	567.751553	1133.48855	-0.23159	-0.00013149	-1.6966	-0.00096322	-1.9282	-0.0010947	568.2539751102895	88.668	0.20376	88.668	88.51	88.714	0					5	3	2	0	0	0	0.74651	1	32527	32527		4.756	0.42677	1	709860			32687	9545	23752	23923	31850	31850					-0.07285255780129773
LQCVRKRLLH	10	Unmodified	_LQCVRKRLLH_					0	0	0		nc|ENSG00000198089|A8K8P3-4|SFI1;nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;ENST00000382162.7_1_22:32002284-32014401:+|nuORF	nc|ENSG00000198089|A8K8P3-4|SFI1	nc|ENSG00000198089|A8K8P3-4|SFI1	MULTI-MSMS	A375_MHC_IP_R1	1	422.9925537109375	3	422.592286	1264.75503	0.00022084	9.3325E-08	0.73401	0.00031019	0.73423	0.00031028	422.5925076178387	57.441	0.66194	57.441	57.109	57.771	0					27	12	3	0	0	0	0.71946	1	20579	20579		3.5871	3.5871	1	8457800			32688	9228	23753	23924	31851	31851					0.13324215564421138
LQCVRKRLLH	10	Unmodified	_LQCVRKRLLH_					0	0	0		nc|ENSG00000198089|A8K8P3-4|SFI1;nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;ENST00000382162.7_1_22:32002284-32014401:+|nuORF	nc|ENSG00000198089|A8K8P3-4|SFI1	nc|ENSG00000198089|A8K8P3-4|SFI1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	422.592286	1264.75503	-0.44326	-0.00018732	0.94606	0.0003998	0.5028	0.00021248	422.5925889981324	56.376	0.61186	57.126	56.745	57.356	0.75015	-0.15733	0.00014562	NaN	3.5871	27	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13026000			32689	9228	23753	23924							0.13324215564421138
LQDDDELY	8	Unmodified	_LQDDDELY_					0	0	0			REV__ENSG00000278803|ENST00000458091|PWWP4	REV__ENSG00000278803|ENST00000458091|PWWP4	MSMS	A375_MHC_IP_R2	2	505.70513916015625	2	505.719287	1009.42402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.514	1	70.248	69.748	70.748	0.73421								0	0	0	0.16876	1	26342	26342		16.942	1.0951	1		+		32690	22983	23754	23925	31852	31852					-0.0803141606089639
LQDDSSSLGF	10	Unmodified	_LQDDSSSLGF_					0	0	0		TBC1D10C|p.S24F|1|0.53|ENSG00000175463|chr11:67404273-67404273|C/T|missense_variant	TBC1D10C|p.S24F|1|0.53|ENSG00000175463|chr11:67404273-67404273|C/T|missense_variant	TBC1D10C|p.S24F|1|0.53|ENSG00000175463|chr11:67404273-67404273|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	534.174560546875	2	534.745836	1067.47712	-0.36668	-0.00019608	-0.50791	-0.0002716	-0.8746	-0.00046769	534.7454942230303	48.179	0.5065	48.179	47.97	48.476	0					16	9	2	0	0	0	0.87163	1	17103	17103		9.3831	1.473	1	4388000			32691	29302	23755	23926	31853	31853					-0.053920382782280285
LQDEYDFKCKT	11	Unmodified	_LQDEYDFKCKT_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	A375_MHC_IP_R2	2	464.1446228027344	3	463.883349	1388.62822	-0.80237	-0.00037221	2.5443	0.0011803	1.7419	0.00080805	463.8837818768877	34.427	0.2555	35.179	35.057	35.312	0.75225					5	4	2	0	0	0	0.73078	1	12473	12473		4.1166	0	1	861980			32692	3306	23756	23927	31854	31854					-0.05055219961900548
LQDFFQCGTY	10	Unmodified	_LQDFFQCGTY_					0	0	0		nc|ENSG00000034533|Q2TB18-2|ASTE1;ENSG00000034533|ENST00000264992|ASTE1	nc|ENSG00000034533|Q2TB18-2|ASTE1	nc|ENSG00000034533|Q2TB18-2|ASTE1	MULTI-MSMS	A375_MHC_IP_R2	2	611.7366943359375	2	611.265881	1220.51721	-0.39491	-0.00024139	1.4181	0.00086683	1.0232	0.00062543	611.2670313369476	68.391	0.65843	69.127	68.816	69.474	0.73512					26	12	3	0	0	0	0.62155	1	25997	25997		19.257	2.3147	1	3927800			32693	1127	23757	23928	31855	31855					-0.08422814879281759
LQDGERRKI	9	Unmodified	_LQDGERRKI_					0	0	0		ENST00000261609.11_1_15:28465605-28465737:-|nuORF	ENST00000261609.11_1_15:28465605-28465737:-|nuORF	ENST00000261609.11_1_15:28465605-28465737:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	372.6161804199219	3	372.215761	1113.62546	0.15753	5.8634E-05	0.52668	0.00019604	0.68421	0.00025467	372.2160815637475	19.292	1.0618	19.292	19.221	20.283	0					75	22	6	0	0	0	0.46045	1	4726	4726		33.445	3.6043	1	340950000			32694	10286	23758	23929	31856	31856					0.07318737486116333
LQDRIKFNL	9	Unmodified	_LQDRIKFNL_					0	0	0			REV__ENST00000479187.5_1_12:40692272-40758932:+|nuORF	REV__ENST00000479187.5_1_12:40692272-40758932:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	382.2839050292969	3	382.892507	1145.65569	-0.27459	-0.00010514	0.062943	2.41E-05	-0.21164	-8.1036E-05	382.89253025570736	37.865	0.4614	38.639	38.382	38.843	0.77451					18	8	3	0	0	0	0.47674	1	13934	13934		36.506	14.916	1	9160100	+		32695	22123	23759	23930	31857	31857					0.08869096151352096
LQDSWKDME	9	Unmodified	_LQDSWKDME_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MSMS	A375_MHC_IP_R1	1	576.2089233398438	2	576.255514	1150.49647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.527	1	57.527	57.027	58.027	0								0	0	0	0.14677	1	20640	20640		26.884	5.3467	1				32696	1262	23760	23931	31858	31858					-0.07275405258974388
LQDTDSFSI	9	Unmodified	_LQDTDSFSI_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	A375_MHC_IP_R2	2	512.7443237304688	2	513.242929	1024.47131	-0.64603	-0.00033157	0.43664	0.0002241	-0.20939	-0.00010747	513.2428694852237	84.595	0.76222	85.331	85.018	85.78	0.73601					29	14	3	0	0	0	0.71541	1	32050	32050		16.942	11.182	1	2663000	+		32697	16376	23761	23932	31859	31859					-0.03995136789899334
LQDYYWGME	9	Unmodified	_LQDYYWGME_					0	0	0		nc|ENSG00000152582|Q9C093-2|SPEF2;ENSG00000152582|ENST00000356031|SPEF2	nc|ENSG00000152582|Q9C093-2|SPEF2	nc|ENSG00000152582|Q9C093-2|SPEF2	MSMS	A375_MHC_IP_R2	2	602.72021484375	2	602.752607	1203.49066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.821	1	51.575	51.075	52.075	0.75406								0	0	0	0.15411	1	19117	19117		14.838	0.93222	1				32698	5974	23762	23933	31860	31860					-0.10294503770660413
LQEAEKAKHQL	11	Unmodified	_LQEAEKAKHQL_					0	0	0		ENSG00000216937|ENST00000639629|CCDC7;nc|ENSG00000216937|Q96M83-4|CCDC7;nc|ENSG00000216937|Q96M83-3|CCDC7;nc|ENSG00000216937|Q96M83-5|CCDC7	ENSG00000216937|ENST00000639629|CCDC7	ENSG00000216937|ENST00000639629|CCDC7	MULTI-SECPEP	A375_MHC_IP_R1	1	432.1502685546875	3	432.241976	1293.7041	-0.2799	-0.00012098	-0.63057	-0.00027256	-0.91047	-0.00039354	432.2417915696095	24.523	0.30166	24.523	24.447	24.749	0					6	5	2	0	0	0	0.99411	1	7045	7045		6.6235	0.75532	1	2155800			32699	9652	23763	23934	31861	31861					0.06899545000555918
LQEDQENINPE	11	Unmodified	_LQEDQENINPE_					0	0	0		ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	MULTI-MSMS	A375_MHC_IP_R1	1	665.70361328125	2	664.801871	1327.58919	-0.56338	-0.00037453	-0.13881	-9.228E-05	-0.70219	-0.00046681	664.8015548846012	43.888	0.6119	43.888	43.553	44.165	0					25	11	3	0	0	0	0.7039	1	15328	15328		15.248	2.206	1	8242800			32700	5556	23764	23935	31862	31862					-0.06150228991873519
LQEDQENINPE	11	Unmodified	_LQEDQENINPE_					0	0	0		ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	664.801871	1327.58919	-0.71606	-0.00047604	-0.65298	-0.00043411	-1.369	-0.00091014	664.801354920852	43.205	0.55743	43.977	43.674	44.231	0.7724	0.044545	-0.00026097	NaN	15.248	28	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5853400			32701	5556	23764	23935							-0.06150228991873519
LQEEEKHSSEE	11	Unmodified	_LQEEEKHSSEE_					0	0	0		ENSG00000134899|ENST00000652225|ERCC5;nc|ENSG00000134899|P28715-3|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	MULTI-MSMS	A375_MHC_IP_R2	2	673.1991577148438	2	672.799328	1343.5841	-0.60601	-0.00040772	-0.36279	-0.00024409	-0.96881	-0.00065181	673.3004709548259	43.178	0.75885	43.95	43.724	44.483	0.7724					22	14	2	0	0	0	0.49816	1	16075	16075		31.268	31.268	1	6422200			32702	4621	23765	23936	31863	31863					-0.07394532854505087
LQEENRRN	8	Unmodified	_LQEENRRN_					0	0	0		ITGA4|p.D1020N|1|0.29|ENSG00000115232|chr2:181535486-181535486|G/A|missense_variant	ITGA4|p.D1020N|1|0.29|ENSG00000115232|chr2:181535486-181535486|G/A|missense_variant	ITGA4|p.D1020N|1|0.29|ENSG00000115232|chr2:181535486-181535486|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	529.7758178710938	2	529.770511	1057.52647	-0.59926	-0.00031747	1.0904	0.00057767	0.49115	0.0002602	529.7714314195825	82.645	1.0612	83.388	82.889	83.951	0.74293					35	20	3	0	0	0	0.70206	1	31586	31586		34.102	10.082	1	3247800			32703	14178	23766	23937	31864	31864					7.145212293835357E-06
LQEHQIVLVE	10	Unmodified	_LQEHQIVLVE_					0	0	0		ENSG00000128626|ENST00000308018|MRPS12	ENSG00000128626|ENST00000308018|MRPS12	ENSG00000128626|ENST00000308018|MRPS12	MULTI-SECPEP	A375_MHC_IP_R2	2	604.7373657226562	2	604.337695	1206.66084	-0.56816	-0.00034336	-0.0080887	-4.8883E-06	-0.57624	-0.00034825	604.3377477195196	66.478	0.96959	67.214	66.678	67.648	0.73631					45	18	4	0	0	0	0.55784	1	25174	25174		63.227	9.3947	1	17635000			32704	4156	23767	23938	31865	31865					0.06577355223271297
LQEKKEWC	8	Unmodified	_LQEKKEWC_					0	0	0			REV__ENST00000374979.7_2_11:124644802-124670283:-|nuORF	REV__ENST00000374979.7_2_11:124644802-124670283:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	355.4599609375	3	355.179548	1062.51682	-0.092749	-3.2943E-05	-0.15341	-5.4487E-05	-0.24616	-8.7429E-05	355.17945092140593	36.393	1.1679	36.393	35.727	36.895	0					34	22	2	0	0	0	0.7773	1	12361	12361		3.2813	0.78282	1	1539900	+		32705	24119	23768	23939	31866	31866					-0.011941898085069624
LQEKTKRKTKR	11	Unmodified	_LQEKTKRKTKR_					0	0	0			REV__nc|ENSG00000290292|Q8IX15|HOMEZ	REV__nc|ENSG00000290292|Q8IX15|HOMEZ	MULTI-MSMS	A375_MHC_IP_R2	2	473.0313720703125	3	472.631687	1414.87323	-0.38078	-0.00017997	-0.21347	-0.00010089	-0.59425	-0.00028086	472.63154420547636	149.42	1.5157	149.44	148.32	149.84	0.01825					81	45	2	0	0	0	0.73934	1	57991	57991		0	0	1	152370	+		32706	27557	23769	23940	31867	31867					0.18238866353885896
LQEKTKRKTKR	11	Unmodified	_LQEKTKRKTKR_					0	0	0			REV__nc|ENSG00000290292|Q8IX15|HOMEZ	REV__nc|ENSG00000290292|Q8IX15|HOMEZ	MULTI-MATCH	A375_MHC_IP_R1	1		3	472.631687	1414.87323	-0.79038	-0.00037356	0.20812	9.8364E-05	-0.58226	-0.00027519	472.96611875028685	149.19	1.9144	149.19	148	149.92	0	-0.12158	0.00033771	NaN	0	78	53	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187620	+		32707	27557	23769	23940							0.18238866353885896
LQEKTKRKTKR	11	Unmodified	_LQEKTKRKTKR_					0	0	0			REV__nc|ENSG00000290292|Q8IX15|HOMEZ	REV__nc|ENSG00000290292|Q8IX15|HOMEZ	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	472.631687	1414.87323	-0.38078	-0.00017997	-0.21347	-0.00010089	-0.59425	-0.00028086	472.63154420547636	149.42	1.5157	149.44	148.32	149.84	0.01825	0.12158	-0.00026005	NaN	0	81	45	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152370	+		32708	27557	23769	23940							0.18238866353885896
LQEKYEKKRWP	11	Unmodified	_LQEKYEKKRWP_					0	0	0		nc|ENSG00000106351|O95081-2|AGFG2	nc|ENSG00000106351|O95081-2|AGFG2	nc|ENSG00000106351|O95081-2|AGFG2	MULTI-MSMS	A375_MHC_IP_R1	1	753.3163452148438	2	752.917175	1503.8198	-0.74031	-0.00055739	-0.28945	-0.00021793	-1.0298	-0.00077532	752.9169071682732	131.3	0.60443	131.3	131.13	131.73	0					27	11	4	0	0	0	0.73135	1	50627	50627		7.609	1.8771	1	89498000			32709	14528	23770	23941	31868	31868					0.08804068851395641
LQENFSSLLGV	11	Unmodified	_LQENFSSLLGV_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-SECPEP	A375_MHC_IP_R1	1	604.2216186523438	2	603.821878	1205.6292	-0.32561	-0.00019661	0.63244	0.00038188	0.30683	0.00018527	603.8226604517971	103.91	0.71362	103.91	103.52	104.24	0					18	13	2	0	0	0	0.88538	1	38190	38190		18.146	6.5061	1	1518200			32710	5294	23771	23942	31869	31869					0.0346136246930655
LQEPSSQPPVP	11	Unmodified	_LQEPSSQPPVP_					0	0	0		ENST00000529721.5_1_11:75190388-75201776:-|nuORF	ENST00000529721.5_1_11:75190388-75201776:-|nuORF	ENST00000529721.5_1_11:75190388-75201776:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	590.7033081054688	2	589.806228	1177.5979	-1.0541	-0.00062172	-2.2075	-0.001302	-3.2616	-0.0019237	589.8064641087979	33.826	0.80984	34.579	34.196	35.006	0.75225					49	15	5	0	0	0	0.56199	1	12091	12091		26.268	1.2772	1	17715000			32711	13137	23772	23943	31870	31870					0.016207894352419316
LQEQFIEQR	9	Unmodified	_LQEQFIEQR_					0	0	0			REV__ENSG00000181789|ENST00000314797|COPG1	REV__ENSG00000181789|ENST00000314797|COPG1	MULTI-SECPEP	A375_MHC_IP_R2	2	595.1731567382812	2	595.811845	1189.60914	-0.48347	-0.00028806	-3.3358	-0.0019875	-3.8193	-0.0022756	595.8094957275285	69.702	0.45917	70.436	70.132	70.591	0.73421					9	8	2	0	0	0	0.67483	1	26445	26445		10.074	0	1	1091000	+		32712	21665	23773	23944	31871	31871					0.02191611529360671
LQERKQFPY	9	Unmodified	_LQERKQFPY_					0	0	0			REV__ENSG00000155761|ENST00000336338|SPAG17	REV__ENSG00000155761|ENST00000336338|SPAG17	MULTI-SECPEP	A375_MHC_IP_R2	2	403.28741455078125	3	403.552262	1207.63496	0.10506	4.2399E-05	-0.41798	-0.00016868	-0.31292	-0.00012628	403.55185689565093	27.369	0.20399	28.048	27.945	28.149	0.67857					7	3	3	0	0	0	0.71071	1	9317	9317		14.405	2.2306	1	1006500	+		32713	19938	23774	23945	31872	31872					0.03944505771664808
LQERWSSW	8	Unmodified	_LQERWSSW_					0	0	0		ENST00000556036.5_2_14:45605535-45605673:+|nuORF	ENST00000556036.5_2_14:45605535-45605673:+|nuORF	ENST00000556036.5_2_14:45605535-45605673:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	546.6663818359375	2	546.267073	1090.51959	-0.8208	-0.00044838	0.13999	7.647E-05	-0.68082	-0.00037191	546.2669122862658	75.395	0.76323	76.136	75.724	76.487	0.74052					26	14	2	0	0	0	0.88229	1	28619	28619		32.305	0	1	3311500			32714	13437	23775	23946	31873	31873					-0.022045983593443452
LQEVYNVGIH	10	Unmodified	_LQEVYNVGIH_					0	0	0		ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	ENSG00000100888|ENST00000646647|CHD8	ENSG00000100888|ENST00000646647|CHD8	MULTI-MSMS	A375_MHC_IP_R2	2	586.7083740234375	2	586.308938	1170.60332	-0.85723	-0.0005026	-0.37974	-0.00022264	-1.237	-0.00072525	586.3085631102844	61.575	0.35252	62.32	62.121	62.473	0.74504					12	6	2	0	0	0	0.71361	1	23381	23381		6.2058	0.47393	1	1392600			32715	2228	23776	23947	31874	31874					0.024845130177027386
LQEVYNVGIH	10	Unmodified	_LQEVYNVGIH_					0	0	0		ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	ENSG00000100888|ENST00000646647|CHD8	ENSG00000100888|ENST00000646647|CHD8	MULTI-MATCH	A375_MHC_IP_R1	1		2	586.308938	1170.60332	-0.16274	-9.5416E-05	0.74866	0.00043895	0.58592	0.00034353	586.811139799512	62.357	0.512	62.357	62.097	62.609	0	0.018734	0.00087505	NaN	6.2058	14	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	956570			32716	2228	23776	23947							0.024845130177027386
LQEVYNVGIH	10	Unmodified	_LQEVYNVGIH_					0	0	0		ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	ENSG00000100888|ENST00000646647|CHD8	ENSG00000100888|ENST00000646647|CHD8	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	586.308938	1170.60332	-0.85723	-0.0005026	-0.37974	-0.00022264	-1.237	-0.00072525	586.3085631102844	61.575	0.35252	62.32	62.121	62.473	0.74504	-0.018734	-0.00044813	NaN	6.2058	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1392600			32717	2228	23776	23947							0.024845130177027386
LQFIRRERQMD	11	Unmodified	_LQFIRRERQMD_					0	0	0			REV__ENST00000478858.5_1_1:23767892-23782684:-|nuORF	REV__ENST00000478858.5_1_1:23767892-23782684:-|nuORF	MSMS	A375_MHC_IP_R1	1	746.2957153320312	2	746.396084	1490.77762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.896	1	72.896	72.396	73.396	0								0	0	0	0.16265	1	26531	26531		4.897	0	1		+		32718	16882	23777	23948	31875	31875					0.051857701713743154
LQFKIYNPNK	10	Unmodified	_LQFKIYNPNK_					0	0	0		MGAM|p.D1056N|2|0.47|ENSG00000257335|chr7:142054760-142054760|G/A|missense_variant	MGAM|p.D1056N|2|0.47|ENSG00000257335|chr7:142054760-142054760|G/A|missense_variant	MGAM|p.D1056N|2|0.47|ENSG00000257335|chr7:142054760-142054760|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	422.6394958496094	3	422.239796	1263.69756	-0.43874	-0.00018525	-0.73114	-0.00030872	-1.1699	-0.00049397	422.23939489808424	60.236	0.81386	60.981	60.701	61.515	0.74503					21	15	2	0	0	0	0.92832	1	22835	22835		5.4027	2.5594	1	1866200			32719	14380	23778	23949	31876	31876					0.0762565183983952
LQFLEVRQNLS	11	Unmodified	_LQFLEVRQNLS_					0	0	0			REV__nc|ENSG00000174844|Q6ZR08|DNAH12	REV__nc|ENSG00000174844|Q6ZR08|DNAH12	MULTI-MSMS	A375_MHC_IP_R1	1	449.985595703125	3	449.585743	1345.7354	-0.18321	-8.237E-05	-0.096782	-4.3512E-05	-0.27999	-0.00012588	449.5857299533743	34.278	0.35348	34.278	34.052	34.405	0					12	6	2	0	0	0	0.73016	1	11318	11318		4.4062	0	1	3927300	+		32720	27370	23779	23950	31877	31877					0.07636118034656647
LQFLPELIW	9	Unmodified	_LQFLPELIW_					0	0	0		nc|ENSG00000122591|Q9BYI3-3|HYCC1;ENSG00000122591|ENST00000432176|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	MULTI-MSMS	A375_MHC_IP_R2	2	580.234619140625	2	579.831517	1157.64848	-0.081856	-4.7463E-05	0.36	0.00020874	0.27814	0.00016128	579.83168127785	47.175	0.96614	47.937	47.309	48.275	0.76128					42	18	4	0	0	0	0.13797	1	17534	17534		43.858	7.7313	1	20453000			32721	14572	23780	23951	31878	31878					0.0759636355087423
LQFSEKQKP	9	Unmodified	_LQFSEKQKP_					0	0	0			REV__tr|U7T2P2|U7T2P2_FUSNU3-oxoacyl-[acyl-carrier-protein]synthaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00519PE=4SV=1	REV__tr|U7T2P2|U7T2P2_FUSNU3-oxoacyl-[acyl-carrier-protein]synthaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00519PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	369.6133728027344	3	368.873113	1103.59751	0.78707	0.00029033	-1.3592	-0.00050137	-0.57212	-0.00021104	369.206991026931	48.984	0.20214	48.984	48.882	49.084	0					6	3	2	0	0	0	0.79429	1	17307	17307		4.1895	3.9537	1	721670	+		32722	28753	23781	23952	31879	31879					0.04985414506040797
LQFSRERVL	9	Unmodified	_LQFSRERVL_					0	0	0		nc|ENSG00000071909|Q8WXR4-6|MYO3B;ENST00000409940.6_1_2:171034716-171376051:+|nuORF;nc|ENSG00000071909|Q8WXR4-3|MYO3B;nc|ENSG00000071909|Q8WXR4-5|MYO3B;nc|ENSG00000071909|Q8WXR4-2|MYO3B;ENST00000438642.6_1_2:171034716-171400468:+|nuORF;nc|ENSG00000071909|Q8WXR4-4|MYO3B;ENSG00000071909|ENST00000408978|MYO3B;nc|ENSG00000071909|Q8WXR4-7|MYO3B	nc|ENSG00000071909|Q8WXR4-6|MYO3B	nc|ENSG00000071909|Q8WXR4-6|MYO3B	MULTI-SECPEP	A375_MHC_IP_R1	1	574.69873046875	2	574.332747	1146.65094	-0.14394	-8.2669E-05	0.69885	0.00040137	0.55491	0.0003187	574.3342551479103	81.816	0.40445	81.816	81.607	82.011	0					10	7	2	0	0	0	0.61452	1	29970	29970		36.044	17.909	1	1569800			32723	1522	23782	23953	31880	31880					0.0834821200855913
LQGDCACRDP	10	Unmodified	_LQGDCACRDP_					0	0	0		ENSG00000182752|ENST00000328252|PAPPA;ENST00000483254.1_1_9:119135964-119158892:+|nuORF	ENSG00000182752|ENST00000328252|PAPPA	ENSG00000182752|ENST00000328252|PAPPA	MULTI-SECPEP	A375_MHC_IP_R2	2	1076.8424072265625	1	1077.44519	1076.43791	0.086969	9.3704E-05	-0.87528	-0.00094306	-0.78831	-0.00084936	1077.4460033892133	122.93	1.5177	123.31	122.92	124.44	0.3766					51	29	3	0	0	0	0.93799	1	47156	47156		1.4819	0	1	105390000			32724	8433	23783	23954	31881	31881					-0.0972478510509518
LQGRVNPVEY	10	Unmodified	_LQGRVNPVEY_					0	0	0		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	MULTI-SECPEP	A375_MHC_IP_R1	1	392.9465026855469	3	392.212017	1173.61422	0.090252	3.5398E-05	-0.017265	-6.7717E-06	0.072986	2.8626E-05	392.2120130530113	24.826	0.40649	24.826	24.698	25.104	0					14	7	2	0	0	0	0.88918	1	7151	7151		7.9454	3.5392	1	15229000			32725	4806	23784	23955	31882	31882					0.034359153920149765
LQGSEILDPLH	11	Unmodified	_LQGSEILDPLH_					0	0	0			REV__ENSG00000131203|ENST00000518237|IDO1	REV__ENSG00000131203|ENST00000518237|IDO1	MULTI-SECPEP	A375_MHC_IP_R2	2	407.88677978515625	3	407.88731	1220.6401	-0.33516	-0.00013671	-0.86339	-0.00035217	-1.1986	-0.00048888	408.2211027479883	22.875	0.30618	23.505	23.368	23.675	0.63014					7	5	2	0	0	0	0.9754	1	7353	7353		6.6235	3.5512	1	3531400	+		32726	18595	23785	23956	31883	31883					0.03860764843625475
LQHAKQKLI	9	Unmodified	_LQHAKQKLI_					0	0	0			REV__ENSG00000138193|ENST00000371380|PLCE1	REV__ENSG00000138193|ENST00000371380|PLCE1	MULTI-SECPEP	A375_MHC_IP_R1	1	360.95721435546875	3	360.229231	1077.66586	0.13628	4.9092E-05	-0.3269	-0.00011776	-0.19062	-6.8666E-05	360.2291425995331	43.75	0.61047	43.75	43.451	44.061	0					16	11	2	0	0	0	0.67539	1	15228	15228		21.537	5.3879	1	1453000	+		32727	19077	23786	23957	31884	31884					0.13013703876572436
LQHLRPWF	8	Unmodified	_LQHLRPWF_					0	0	0			REV__chr1:144208475-144245238|401|16.51|0.0|20.66|-|1|TE_info:MLT1H1,MLT1H1_dup140,ERVL-MaLR,LTR,acceptor,-,144208113,144208475|None,LINC02802|5	REV__chr1:144208475-144245238|401|16.51|0.0|20.66|-|1|TE_info:MLT1H1,MLT1H1_dup140,ERVL-MaLR,LTR,acceptor,-,144208113,144208475|None,LINC02802|5	MULTI-SECPEP	A375_MHC_IP_R1	1	365.6331481933594	3	366.206538	1095.59778	0.17989	6.5876E-05	-0.8658	-0.00031706	-0.68591	-0.00025118	366.20526176039493	19.777	0.50913	19.777	19.521	20.03	0					31	9	4	0	0	0	0.97144	1	4872	4872		10.824	0.67336	1	2135100	+		32728	15663	23787	23958	31885	31885					0.05380879016547624
LQHMVYEY	8	Unmodified	_LQHMVYEY_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-SECPEP	A375_MHC_IP_R2	2	541.1688842773438	2	541.75241	1081.49027	-1.3502	-0.00073148	0.25264	0.00013687	-1.0976	-0.00059461	541.7526461121909	37.347	1.5766	38.118	37.056	38.632	0.7709					37	30	2	0	0	0	0.94479	1	13717	13717		8.5933	0	1	1889600			32729	8815	23788	23959	31886	31886					-0.047218786998428186
LQHPETQI	8	Unmodified	_LQHPETQI_					0	0	0		nc|ENSG00000134909|A7KAX9-2|ARHGAP32;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-SECPEP	A375_MHC_IP_R2	2	482.6785888671875	2	483.256174	964.497795	-1.1622	-0.00056165	-0.7875	-0.00038056	-1.9497	-0.00094221	483.2554086147636	53.353	0.71495	54.104	53.638	54.353	0.75105					20	13	3	0	0	0	0.91495	1	20013	20013		18.135	0	1	3108200			32730	4625	23789	23960	31887	31887					0.01412596892100737
LQICFLVCLQ	10	Unmodified	_LQICFLVCLQ_					0	0	0			REV__ENSG00000106560|ENST00000223293|GIMAP2	REV__ENSG00000106560|ENST00000223293|GIMAP2	MULTI-MSMS	A375_MHC_IP_R2	2	394.2804260253906	3	393.880334	1178.61917	-0.28194	-0.00011105	0.49906	0.00019657	0.21713	8.5522E-05	393.88040948098	50.73	0.60672	51.484	51.108	51.715	0.75406					33	11	4	0	0	0	0.66857	1	19065	19065		15.739	15.739	1	10794000	+		32731	17456	23790	23961	31888	31888					0.037007599387607115
LQICFLVCLQ	10	Unmodified	_LQICFLVCLQ_					0	0	0			REV__ENSG00000106560|ENST00000223293|GIMAP2	REV__ENSG00000106560|ENST00000223293|GIMAP2	MULTI-SECPEP	A375_MHC_IP_R2	2	394.2804260253906	3	393.880334	1178.61917	-0.28194	-0.00011105	0.49906	0.00019657	0.21713	8.5522E-05	393.88040948098	50.73	0.60672	51.484	51.108	51.715	0.75406					33	11	4	0	0	0	0.91932	1	19065	19065		15.739	15.739	1	10794000	+		32732	17456	23790	23961	31889	31889					0.037007599387607115
LQIERLHQRRR	11	Unmodified	_LQIERLHQRRR_					0	0	0		nc|ENSG00000292277|Q9UJ98|STAG3;ENSG00000066923|ENST00000615138|STAG3;nc|ENSG00000292277|Q9UJ98-3|STAG3	nc|ENSG00000292277|Q9UJ98|STAG3	nc|ENSG00000292277|Q9UJ98|STAG3	MULTI-MSMS	A375_MHC_IP_R1	1	753.4231567382812	2	752.950207	1503.88586	-0.44983	-0.0003387	0.33456	0.0002519	-0.11527	-8.6793E-05	753.4531132370788	118.4	0.81187	118.4	117.92	118.73	0					20	15	2	0	0	0	0.72728	1	43620	43620		11.495	3.8858	1	75788000			32733	1422	23791	23962	31890	31890					0.15407322536816537
LQIHEGLLQH	10	Unmodified	_LQIHEGLLQH_					0	0	0		ENST00000414673.5_1_17:16734454-16736059:-|nuORF	ENST00000414673.5_1_17:16734454-16736059:-|nuORF	ENST00000414673.5_1_17:16734454-16736059:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	396.9559020996094	3	396.555895	1186.64586	-0.12826	-5.0864E-05	-0.019665	-7.7983E-06	-0.14793	-5.8662E-05	396.5559075509118	31.777	0.71054	32.514	32.249	32.96	0.73691					33	13	4	0	0	0	0.60385	1	11245	11245		20.581	0.95498	1	18050000			32734	11669	23792	23963	31891	31891					0.05999908145963673
LQIKWDSL	8	Unmodified	_LQIKWDSL_					0	0	0			REV__ENSG00000163617|ENST00000295878|CCDC191	REV__ENSG00000163617|ENST00000295878|CCDC191	MULTI-SECPEP	A375_MHC_IP_R2	2	502.20428466796875	2	501.784567	1001.55458	-0.54106	-0.0002715	1.0917	0.00054777	0.55059	0.00027628	501.7852091657125	63.951	0.81383	64.691	64.191	65.004	0.74022					25	15	2	0	0	0	0.85715	1	24330	24330		22.736	2.2827	1	1287700	+		32735	20384	23793	23964	31892	31892					0.05386644448606148
LQILHQDLP	9	Unmodified	_LQILHQDLP_					0	0	0			REV__nc|ENSG00000172752|A8TX70-2|COL6A5	REV__nc|ENSG00000172752|A8TX70-2|COL6A5	MULTI-SECPEP	A375_MHC_IP_R2	2	538.2184448242188	2	538.808574	1075.60259	-0.78349	-0.00042215	0.33715	0.00018166	-0.44634	-0.00024049	538.8086651792918	87.914	1.2141	88.646	88.217	89.431	0.7318					42	23	3	0	0	0	0.4261	1	33709	33709		37.974	12.983	1	19038000	+		32736	21167	23794	23965	31893	31893					0.06781718368665679
LQISINVNSI	10	Unmodified	_LQISINVNSI_					0	0	0			REV__ENSG00000007202|ENST00000528896|BLTP2	REV__ENSG00000007202|ENST00000528896|BLTP2	MULTI-SECPEP	A375_MHC_IP_R1	1	550.6168212890625	2	550.819138	1099.62372	-0.61177	-0.00033697	-0.93503	-0.00051503	-1.5468	-0.00085201	550.8185242100126	83.699	0.35388	83.699	83.483	83.837	0					10	6	2	0	0	0	0.92514	1	30660	30660		8.1555	2.3951	1	772730	+		32737	16151	23795	23966	31894	31894					0.07789683677515313
LQKGFHEV	8	Unmodified	_LQKGFHEV_					0	0	0		ENST00000528582.5_2_11:22647338-22696413:+|nuORF	ENST00000528582.5_2_11:22647338-22696413:+|nuORF	ENST00000528582.5_2_11:22647338-22696413:+|nuORF	MSMS	A375_MHC_IP_R2	2	479.192138671875	2	479.261259	956.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.997	1	44.766	44.266	45.266	0.7691								0	0	0	0.16876	1	16410	16410		24.674	9.8356	1				32738	13119	23796	23967	31895	31895					0.027972046173204035
LQKKAHELK	9	Unmodified	_LQKKAHELK_					0	0	0		nc|ENSG00000131351|Q9BT25-2|HAUS8;nc|ENSG00000131351|Q9BT25-3|HAUS8;ENSG00000131351|ENST00000253669|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	MULTI-SECPEP	A375_MHC_IP_R1	1	365.9730529785156	3	365.560869	1093.66078	-0.24014	-8.7785E-05	0.41132	0.00015036	0.17118	6.2578E-05	365.56074943734706	29.328	0.5078	29.328	28.996	29.504	0					14	9	3	0	0	0	0.39388	1	9239	9239		23.79	0	1	11942000			32739	4320	23797	23968	31896	31896					0.1176940001391813
LQKKGVLLVL	10	Unmodified	_LQKKGVLLVL_					0	0	0			REV__ENST00000542587.5_3_19:19738235-19738667:-|nuORF	REV__ENST00000542587.5_3_19:19738235-19738667:-|nuORF	MSMS	A375_MHC_IP_R2	2	370.9366760253906	3	370.925148	1109.75362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.736	1	46.501	46.001	47.001	0.76519								0	0	0	0.15624	1	17106	17106		0.56317	0	1		+		32740	25969	23798	23969	31897	31897					0.2031290474733396
LQKKNHLI	8	Unmodified	_LQKKNHLI_					0	0	0		PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.K332E|1|0.09|ENSG00000173193|chr3:122699548-122699548|A/G|missense_variant	PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant	PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	498.1408996582031	2	497.313826	992.613099	-0.38396	-0.00019095	0.67282	0.0003346	0.28886	0.00014365	497.31427357056737	68.715	0.50601	68.715	68.463	68.969	0					15	9	2	0	0	0	0.75322	1	24930	24930		19.439	0.18201	1	1239000			32741	15111	23799	23970	31898	31898					0.1164974581373599
LQKKNHLI	8	Unmodified	_LQKKNHLI_					0	0	0		PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.K332E|1|0.09|ENSG00000173193|chr3:122699548-122699548|A/G|missense_variant	PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant	PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	497.7131652832031	2	497.313826	992.613099	-0.48259	-0.00024	-0.20861	-0.00010374	-0.6912	-0.00034374	497.31363238727056	67.459	0.35793	68.195	68.001	68.359	0.73631					14	6	3	0	0	0	0.91495	1	25578	25578		18.135	0	1	1955100			32742	15111	23799	23970	31899	31899					0.1164974581373599
LQKKPPRV	8	Unmodified	_LQKKPPRV_					0	0	0		ENST00000585421.5_1_17:76851400-76851721:-|nuORF	ENST00000585421.5_1_17:76851400-76851721:-|nuORF	ENST00000585421.5_1_17:76851400-76851721:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	483.71588134765625	2	483.316369	964.618185	-0.70005	-0.00033834	0.05957	2.8791E-05	-0.64048	-0.00030955	483.3163848715507	29.662	1.3509	29.662	29.302	30.653	0					43	26	2	0	0	0	0.45507	1	9315	9315		50.855	8.7605	1	16570000			32743	13717	23800	23971	31900	31900					0.13446049676360872
LQKKPPRV	8	Unmodified	_LQKKPPRV_					0	0	0		ENST00000585421.5_1_17:76851400-76851721:-|nuORF	ENST00000585421.5_1_17:76851400-76851721:-|nuORF	ENST00000585421.5_1_17:76851400-76851721:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	483.7159423828125	2	483.316369	964.618185	-1.3213	-0.00063862	0.15451	7.4679E-05	-1.1668	-0.00056394	483.31636142173676	28.821	1.152	29.519	29.183	30.335	0.69872					41	22	2	0	0	0	0.72008	1	10205	10205		28.487	6.7402	1	15143000			32744	13717	23800	23971	31901	31901					0.13446049676360872
LQKLLERVP	9	Unmodified	_LQKLLERVP_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	A375_MHC_IP_R1	1	365.9174499511719	3	365.901003	1094.68118	0.11152	4.0807E-05	-0.14665	-5.3658E-05	-0.035124	-1.2852E-05	365.9009687482404	33.078	0.50572	33.078	32.785	33.291	0					14	9	2	0	0	0	0.60982	1	10625	10625		14.405	2.8875	1	1403000			32745	5456	23801	23972	31902	31902					0.13762570673748087
LQKPFWLRE	9	Unmodified	_LQKPFWLRE_					0	0	0		ENST00000259239.7_1_2:131099896-131100070:+|nuORF	ENST00000259239.7_1_2:131099896-131100070:+|nuORF	ENST00000259239.7_1_2:131099896-131100070:+|nuORF	MSMS	A375_MHC_IP_R1	1	608.6826171875	2	608.84549	1215.67643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.09	1	105.09	104.59	105.59	0								0	0	0	0.15486	1	38583	38583		3.9444	0.3479	1				32746	10260	23802	23973	31903	31903					0.07721686530976513
LQKPGKSPKL	10	Unmodified	_LQKPGKSPKL_					0	0	0		nc|ENSG00000211633|A0A075B6H8|IGKV1D-42	nc|ENSG00000211633|A0A075B6H8|IGKV1D-42	nc|ENSG00000211633|A0A075B6H8|IGKV1D-42	MULTI-SECPEP	A375_MHC_IP_R2	2	549.1424560546875	2	548.347866	1094.68118	-1.5403	-0.00084464	0.42465	0.00023285	-1.1157	-0.00061178	548.3477626717859	29.457	0.25462	30.156	29.981	30.236	0.69872					6	4	2	0	0	0	0.91909	1	10268	10268		5.7319	1.4026	1	958640			32747	14870	23803	23974	31904	31904					0.13762570673748087
LQKQKQKL	8	Unmodified	_LQKQKQKL_					0	0	0		ENST00000263960.6_1_2:198339073-198339454:+|nuORF	ENST00000263960.6_1_2:198339073-198339454:+|nuORF	ENST00000263960.6_1_2:198339073-198339454:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	507.98016357421875	2	507.326934	1012.63931	-0.95894	-0.00048649	0.44269	0.00022459	-0.51625	-0.00026191	507.3269775955096	41.247	0.40407	42.022	41.845	42.249	0.77451					17	7	3	0	0	0	0.77651	1	15300	15300		20.454	4.3045	1	3994300			32748	10326	23804	23975	31905	31905					0.1335001498522388
LQKQRKLIS	9	Unmodified	_LQKQRKLIS_					0	0	0			REV__ENSG00000110925|ENST00000228515|CSRNP2	REV__ENSG00000110925|ENST00000228515|CSRNP2	MULTI-MSMS	A375_MHC_IP_R1	1	372.6134033203125	3	371.908269	1112.70298	0.30133	0.00011207	-0.27688	-0.00010298	0.024447	9.0921E-06	371.9081632434524	40.87	0.7069	40.87	40.559	41.266	0					46	13	5	0	0	0	0.72761	1	14176	14176		4.5289	0.94181	1	73799000	+		32749	17646	23805	23976	31906	31906					0.15113375422311037
LQKRKTKY	8	Unmodified	_LQKRKTKY_					0	0	0			REV__nc|ENSG00000167034|Q99801-3|NKX3-1	REV__nc|ENSG00000167034|Q99801-3|NKX3-1	MULTI-SECPEP	A375_MHC_IP_R2	2	533.2319946289062	2	532.832383	1063.65021	-0.84839	-0.00045205	-0.022857	-1.2179E-05	-0.87125	-0.00046423	532.8323496439207	36.048	0.51095	36.812	36.537	37.048	0.76338					23	9	3	0	0	0	0.88903	1	13089	13089		23.148	3.8914	1	13840000	+		32750	20726	23806	23977	31907	31907					0.1209341735950602
LQKTHREKERR	11	Unmodified	_LQKTHREKERR_					0	0	0			REV__nc|ENSG00000179242|P55283-2|CDH4	REV__nc|ENSG00000179242|P55283-2|CDH4	MULTI-MSMS	A375_MHC_IP_R2	2	741.32568359375	2	740.926397	1479.83824	-0.79267	-0.00058731	-0.34608	-0.00025642	-1.1387	-0.00084373	740.9260601536212	132.53	0.96854	132.72	132.2	133.17	0.18953					39	18	3	0	0	0	0.73809	1	52016	52016		1.1933	0.84271	1	6491300	+		32751	21549	23807	23978	31908	31908					0.11751623545933398
LQKTHREKERR	11	Unmodified	_LQKTHREKERR_					0	0	0			REV__nc|ENSG00000179242|P55283-2|CDH4	REV__nc|ENSG00000179242|P55283-2|CDH4	MULTI-MSMS	A375_MHC_IP_R2	2	494.68609619140625	3	494.28669	1479.83824	-0.40978	-0.00020255	-0.50705	-0.00025063	-0.91683	-0.00045318	494.28635095749434	133.41	1.5768	133.58	133.15	134.72	0.16487					80	30	4	0	0	0	0.73809	1	52546	52546		0.40827	0	1	21543000	+		32752	21549	23807	23978	31909	31909					0.11751623545933398
LQKTVMIPP	9	Unmodified	_LQKTVMIPP_					0	0	0			REV__nc|ENSG00000196091|Q00872-7|MYBPC1	REV__nc|ENSG00000196091|Q00872-7|MYBPC1	MSMS	A375_MHC_IP_R1	1	513.6867065429688	2	513.804445	1025.59434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.9	1	131.9	131.4	132.4	0								0	0	0	0.15486	1	50854	50854		9.3831	2.66	1		+		32753	27433	23808	23979	31910	31910					0.08256448127667682
LQKVKIQLK	9	Unmodified	_LQKVKIQLK_					0	0	0			REV__ENSG00000144395|ENST00000389175|CCDC150	REV__ENSG00000144395|ENST00000389175|CCDC150	MSMS	A375_MHC_IP_R2	2	366.644775390625	3	366.585015	1096.73321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.315	1	41.089	40.589	41.589	0.77451								0	0	0	0.15486	1	14925	14925		5.7834	0.88642	1		+		32754	19421	23809	23980	31911	31911					0.18871734087497316
LQLEAIHKV	9	Unmodified	_LQLEAIHKV_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-SECPEP	A375_MHC_IP_R1	1	526.2186279296875	2	525.818941	1049.62333	-0.23921	-0.00012578	0.17173	9.03E-05	-0.067481	-3.5483E-05	525.8187043827804	42.917	0.56079	42.917	42.739	43.3	0					15	10	2	0	0	0	0.59614	1	14930	14930		28.495	22.763	1	2301500			32755	3280	23810	23981	31912	31912					0.10050308748327552
LQLEAIHKV	9	Unmodified	_LQLEAIHKV_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MATCH	A375_MHC_IP_R2	2		2	525.818941	1049.62333	-0.41631	-0.0002189	0.60275	0.00031694	0.18644	9.8035E-05	525.8188388059912	42.037	0.25539	42.811	42.709	42.964	0.77451	-0.052616	0.00025937	NaN	53.404	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1240400			32756	3280	23810	23981							0.10050308748327552
LQLELKERE	9	Unmodified	_LQLELKERE_					0	0	0		nc|ENSG00000139625|Q12852|MAP3K12;ENSG00000139625|ENST00000547488|MAP3K12;ENST00000552365.1_1_12:53874968-53878035:-|nuORF;ENST00000547020.1_1_12:53877389-53878109:-|nuORF	nc|ENSG00000139625|Q12852|MAP3K12	nc|ENSG00000139625|Q12852|MAP3K12	MULTI-SECPEP	A375_MHC_IP_R1	1	578.7203979492188	2	579.32987	1156.64519	0.18514	0.00010726	-0.77069	-0.00044648	-0.58555	-0.00033922	579.329311262996	127.55	1.1147	127.55	126.76	127.87	0					36	21	2	0	0	0	0.79191	1	48911	48911		6.7232	0.99131	1	7136200			32757	5092	23811	23982	31913	31913					0.0731306870620756
LQLFHLIRR	9	Unmodified	_LQLFHLIRR_					0	0	0			REV__ENST00000505065.1_1_5:130727572-130727803:+|nuORF	REV__ENST00000505065.1_1_5:130727572-130727803:+|nuORF	MSMS	A375_MHC_IP_R1	1	399.65081787109375	3	399.252258	1194.73495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.9464	1	3.9464	3.4464	4.4464	0								0	0	0	0.15486	1	898	898		0.23584	0	1		+		32758	25531	23812	23983	31914	31914					0.14536787896099668
LQLFLDWYVFW	11	Unmodified	_LQLFLDWYVFW_					0	0	0		ENST00000496121.5_1_21:30434776-30434839:-|nuORF	ENST00000496121.5_1_21:30434776-30434839:-|nuORF	ENST00000496121.5_1_21:30434776-30434839:-|nuORF	MSMS	A375_MHC_IP_R1	1	510.642822265625	3	510.599101	1528.77547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.082	1	35.082	34.582	35.582	0								0	0	0	0.16334	1	11636	11636		0.45452	0	1				32759	12718	23813	23984	31915	31915					0.0322366470520592
LQLFLDWYVFW	11	Unmodified	_LQLFLDWYVFW_					0	0	0		ENST00000496121.5_1_21:30434776-30434839:-|nuORF	ENST00000496121.5_1_21:30434776-30434839:-|nuORF	ENST00000496121.5_1_21:30434776-30434839:-|nuORF	MSMS	A375_MHC_IP_R2	2	510.64276123046875	3	510.599101	1528.77547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.396	1	35.148	34.648	35.648	0.75225								0	0	0	0.16334	1	12402	12402		0.45452	0	1				32760	12718	23813	23984	31916	31916					0.0322366470520592
LQLFVTFY	8	Unmodified	_LQLFVTFY_					0	0	0			REV__ROGDI|p.S264F|1|0.42|ENSG00000067836|chr16:4797745-4797745|G/A|missense_variant	REV__ROGDI|p.S264F|1|0.42|ENSG00000067836|chr16:4797745-4797745|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	515.6951904296875	2	515.784036	1029.55352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.21	1	104.21	103.71	104.71	0								0	0	0	0.16876	1	38267	38267		28.487	9.0478	1		+		32761	27893	23814	23985	31917	31917					0.039924300797110845
LQLGSYTNK	9	Unmodified	_LQLGSYTNK_					0	0	0			REV__ENSG00000092847|ENST00000373204|AGO1;REV__nc|ENSG00000126070|Q9H9G7-2|AGO3	REV__nc|ENSG00000126070|Q9H9G7-2|AGO3	MSMS	A375_MHC_IP_R1	1	512.1737060546875	2	512.277106	1022.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.504	1	84.504	84.004	85.004	0								0	0	0	0.15283	1	30954	30954		16.942	1.0951	1		+		32762	16976;18378	23815	23986	31918	31918					0.029291525806115715
LQLHELTKQR	10	Unmodified	_LQLHELTKQR_					0	0	0			REV__ENSG00000159399|ENST00000290573|HK2	REV__ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	A375_MHC_IP_R2	2	633.7682495117188	2	633.369861	1264.72517	-0.60719	-0.00038457	-1.4843	-0.00094009	-2.0915	-0.0013247	633.3684935186822	141.88	1.7885	141.91	140.74	142.53	0.030731					66	34	2	0	0	0	0.72321	1	55285	55285		1.6526	0	1	993120	+		32763	20117	23816	23987	31919	31919					0.10339555100040343
LQLKEEKFE	9	Unmodified	_LQLKEEKFE_					0	0	0			REV__ENSG00000119471|ENST00000398805|HSDL2	REV__ENSG00000119471|ENST00000398805|HSDL2	MULTI-MSMS	A375_MHC_IP_R2	2	388.9490051269531	3	388.548406	1162.62339	-0.20807	-8.0846E-05	1.1008	0.00042772	0.89274	0.00034687	388.5488675420952	45.359	0.65609	46.124	45.796	46.453	0.76519					23	12	3	0	0	0	0.67332	1	16968	16968		6.1918	1.1443	1	3909900	+		32764	18073	23817	23988	31920	31920					0.04858263957657982
LQLMITLVDP	10	Unmodified	_LQLMITLVDP_					0	0	0			REV__ENST00000538021.5_2_11:72004413-72018253:-|nuORF	REV__ENST00000538021.5_2_11:72004413-72018253:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	571.1795043945312	2	571.828117	1141.64168	-0.55036	-0.00031471	-2.3467	-0.0013419	-2.897	-0.0016566	571.8273481400856	28.238	0.2532	28.917	28.757	29.01	0.67857					6	4	2	0	0	0	0.93799	1	9699	9699		3.5965	0	1	1153000	+		32765	20235	23818	23989	31921	31921					0.07652682608022587
LQLQQRWK	8	Unmodified	_LQLQQRWK_					0	0	0		ACAA2|p.S186L|1|0.24|ENSG00000167315|chr18:49794300-49794300|G/A|missense_variant	ACAA2|p.S186L|1|0.24|ENSG00000167315|chr18:49794300-49794300|G/A|missense_variant	ACAA2|p.S186L|1|0.24|ENSG00000167315|chr18:49794300-49794300|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	1099.84912109375	1	1099.63709	1098.62981	0.17749	0.00019517	3.0251	0.0033265	3.2026	0.0035217	1099.6415088418182	119.06	1.2166	119.61	118.84	120.06	0.55413					28	23	2	0	0	0	0.972	1	45422	45422		8.5933	3.3626	1	65119000			32766	26	23819	23990	31922	31922					0.08444246699696123
LQLRHLKA	8	Unmodified	_LQLRHLKA_					0	0	0		ENSG00000157578|ENST00000288350|LCA5L	ENSG00000157578|ENST00000288350|LCA5L	ENSG00000157578|ENST00000288350|LCA5L	MULTI-MSMS	A375_MHC_IP_R2	2	490.2788391113281	2	489.813993	977.613434	-0.58974	-0.00028886	0.057399	2.8115E-05	-0.53234	-0.00026075	489.81400601011376	39.735	0.45691	40.509	40.219	40.676	0.77451					18	8	3	0	0	0	0.77717	1	14753	14753		5.2307	0	1	1751100			32767	6252	23820	23991	31923	31923					0.1237316553359733
LQLRHLKLY	9	Unmodified	_LQLRHLKLY_					0	0	0		ENST00000456315.6_2_1:68955238-68960134:-|nuORF	ENST00000456315.6_2_1:68955238-68960134:-|nuORF	ENST00000456315.6_2_1:68955238-68960134:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	591.682373046875	2	592.369133	1182.72371	-0.51169	-0.00030311	0.35222	0.00020865	-0.15947	-9.4465E-05	592.3690978018745	48.298	0.50312	49.055	48.779	49.282	0.75737					20	9	3	0	0	0	0.81254	1	18087	18087		2.0598	0.21551	1	5333400			32768	12130	23821	23992	31924	31924					0.13965965801980929
LQLRPQLRQ	9	Unmodified	_LQLRPQLRQ_					0	0	0			REV__ENST00000497100.5_1_X:53231039-53231138:-|nuORF	REV__ENST00000497100.5_1_X:53231039-53231138:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	384.6183166503906	3	384.571768	1150.69348	0.17258	6.637E-05	-0.042309	-1.6271E-05	0.13027	5.01E-05	384.5718400442515	19.597	0.66159	19.597	19.318	19.98	0					28	12	3	0	0	0	0.7235	2	4739	4739;4799		4.897	0.60244	1	6672000	+		32769	25466	23822	23993	31925;31926	31925					0.1241560713679064
LQLSWCCC	8	Unmodified	_LQLSWCCC_					0	0	0		ENST00000271375.6_1_1:168204400-168206004:+|nuORF	ENST00000271375.6_1_1:168204400-168206004:+|nuORF	ENST00000271375.6_1_1:168204400-168206004:+|nuORF	MSMS	A375_MHC_IP_R1	1	478.1334533691406	2	478.195359	954.376165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.689	1	38.689	38.189	39.189	0								0	0	0	0.16876	1	13150	13150		14.582	0	1				32770	10380	23823	23994	31927	31927					-0.10284808057951977
LQLTEGHGFF	10	Unmodified	_LQLTEGHGFF_					0	0	0		MAN2B2|p.L136F|1|0.39|ENSG00000013288|chr4:6587010-6587010|C/T|missense_variant	MAN2B2|p.L136F|1|0.39|ENSG00000013288|chr4:6587010-6587010|C/T|missense_variant	MAN2B2|p.L136F|1|0.39|ENSG00000013288|chr4:6587010-6587010|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	574.5818481445312	2	574.790381	1147.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.84	1	103.6	103.1	104.1	0.76428								0	0	0	0.14741	1	38957	38957		22.736	0.98964	1				32771	14345	23824	23995	31928	31928					-0.0016715852802917652
LQLVRRYKKLK	11	Unmodified	_LQLVRRYKKLK_					0	0	0		nc|ENSG00000119715|O95718|ESRRB;ENSG00000119715|ENST00000644823|ESRRB;nc|ENSG00000119715|O95718-2|ESRRB;nc|ENSG00000119715|O95718-1|ESRRB	nc|ENSG00000119715|O95718|ESRRB	nc|ENSG00000119715|O95718|ESRRB	MULTI-SECPEP	A375_MHC_IP_R2	2	723.0743408203125	2	722.97737	1443.94019	-0.7474	-0.00054035	-0.21101	-0.00015256	-0.95841	-0.00069291	722.9773084709086	125.14	0.50485	125.44	125.22	125.72	0.2951					12	9	3	0	0	0	0.99738	1	48593	48593		2.7352	1.4057	1	77234000			32772	3615	23825	23996	31929	31929					0.2359752163565645
LQMEDCEEWRV	11	Unmodified	_LQMEDCEEWRV_					0	0	0		nc|ENSG00000213213|Q5T5S1-2|CCDC183;ENSG00000213213|ENST00000338005|CCDC183;ENST00000479371.5_1_9:139697227-139701184:+|nuORF;nc|ENSG00000213213|Q5T5S1-4|CCDC183;ENST00000430612.5_1_9:139694306-139700853:+|nuORF;ENST00000371682.7_1_9:139690828-139700853:+|nuORF	nc|ENSG00000213213|Q5T5S1-2|CCDC183	nc|ENSG00000213213|Q5T5S1-2|CCDC183	MULTI-MSMS	A375_MHC_IP_R2	2	480.471923828125	3	479.876088	1436.60644	-0.56912	-0.00027311	2.0662	0.00099151	1.4971	0.00071841	480.2118138125777	31.98	0.30241	32.717	32.555	32.857	0.73692					11	5	3	0	0	0	0.73679	1	11346	11346		2.4348	1.1051	1	1492700			32773	9558	23826	23997	31930	31930					-0.09440347982149433
LQMIKIMDKI	10	Unmodified	_LQMIKIMDKI_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A;ENST00000531428.1_1_11:17113817-17167232:-|nuORF	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	A375_MHC_IP_R1	1	411.96673583984375	3	411.575022	1231.70324	-0.024932	-1.0261E-05	-0.37512	-0.00015439	-0.40005	-0.00016465	411.57494830575934	24.523	0.15034	24.523	24.397	24.547	0					4	2	2	0	0	0	0.61662	1	6955	6955		19.626	0.26401	1	3097700			32774	1000	23827	23998	31931	31931					0.09665291035639711
LQMKLKVLI	9	Unmodified	_LQMKLKVLI_					0	0	0			REV__nc|ENSG00000137841|Q00722-3|PLCB2	REV__nc|ENSG00000137841|Q00722-3|PLCB2	MULTI-SECPEP	A375_MHC_IP_R2	2	542.7109985351562	2	543.359388	1084.70422	-0.73021	-0.00039676	1.6475	0.00089521	0.91734	0.00049844	543.8628501243563	89.617	0.25636	90.348	90.186	90.442	0.7318					6	4	2	0	0	0	0.67539	1	34070	34070		11.64	3.7301	1	975610	+		32775	19042	23828	23999	31932	31932					0.16525873466889607
LQMKWMRLQRL	11	Unmodified	_LQMKWMRLQRL_					0	0	0			REV__ENST00000557837.1_1_15:89060105-89074648:-|nuORF	REV__ENST00000557837.1_1_15:89060105-89074648:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	376.86627197265625	4	376.466621	1501.83738	-0.22755	-8.5664E-05	-0.016524	-6.2209E-06	-0.24407	-9.1885E-05	376.4663704201949	25.732	0.55791	26.392	26.044	26.602	0.65992					30	10	4	0	0	0	0.73472	1	8607	8607		4.4062	1.5629	1	9999600	+		32776	19224	23829	24000	31933	31933					0.10653369581063998
LQMKWMRLQRL	11	Unmodified	_LQMKWMRLQRL_					0	0	0			REV__ENST00000557837.1_1_15:89060105-89074648:-|nuORF	REV__ENST00000557837.1_1_15:89060105-89074648:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	376.5827331542969	4	376.466621	1501.83738	-0.22755	-8.5664E-05	-0.016524	-6.2209E-06	-0.24407	-9.1885E-05	376.4663704201949	25.732	0.55791	26.392	26.044	26.602	0.65992					30	10	4	0	0	0	0.99916	1	8680	8680		2.4348	0.18206	1	9999600	+		32777	19224	23829	24000	31934	31934					0.10653369581063998
LQMQTQPKSPD	11	Unmodified	_LQMQTQPKSPD_					0	0	0			REV__nc|ENSG00000138231|Q9UK59-2|DBR1	REV__nc|ENSG00000138231|Q9UK59-2|DBR1	MULTI-SECPEP	A375_MHC_IP_R1	1	424.28240966796875	3	424.879939	1271.61799	-0.21108	-8.9683E-05	-2.2232	-0.00094461	-2.4343	-0.0010343	425.21358053541115	24.639	0.35441	24.639	24.498	24.852	0					13	6	3	0	0	0	0.99246	1	6993	6993		4.7159	2.2811	1	2636700	+		32778	19078	23830	24001	31935	31935					-0.006957828964686996
LQNAKEQLRE	10	Unmodified	_LQNAKEQLRE_					0	0	0		nc|ENSG00000122483|Q5T9S5-2|CCDC18;nc|ENSG00000122483|Q5T9S5|CCDC18;ENSG00000122483|ENST00000690025|CCDC18	nc|ENSG00000122483|Q5T9S5-2|CCDC18	nc|ENSG00000122483|Q5T9S5-2|CCDC18	MSMS	A375_MHC_IP_R1	1	614.73583984375	2	614.835851	1227.65715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.58	1	116.58	116.08	117.08	0								0	0	0	0.15265	1	42767	42767		12.241	0.74595	1				32779	3783	23831	24002	31936	31936					0.052426854494115105
LQNCHLELD	9	Unmodified	_LQNCHLELD_					0	0	0		DNAH5|p.G4105E|1|0.13|ENSG00000039139|chr5:13719067-13719067|C/T|missense_variant	DNAH5|p.G4105E|1|0.13|ENSG00000039139|chr5:13719067-13719067|C/T|missense_variant	DNAH5|p.G4105E|1|0.13|ENSG00000039139|chr5:13719067-13719067|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	543.2213745117188	2	542.758223	1083.50189	-0.42842	-0.00023253	-0.77856	-0.00042257	-1.207	-0.0006551	542.7574345326859	93.186	0.45876	93.186	92.871	93.329	0					13	8	2	0	0	0	0.6898	1	34265	34265		7.9102	0	1	615810			32780	765	23832	24003	31937	31937					-0.036516816765242766
LQNEKLQQL	9	Unmodified	_LQNEKLQQL_					0	0	0			REV__nc|ENSG00000100599|Q8TB24-4|RIN3	REV__nc|ENSG00000100599|Q8TB24-4|RIN3	MULTI-SECPEP	A375_MHC_IP_R2	2	557.716064453125	2	557.316763	1112.61897	-0.80693	-0.00044971	-0.32702	-0.00018226	-1.134	-0.00063197	557.3164355086906	45.359	0.60568	46.124	45.897	46.503	0.76519					21	11	3	0	0	0	0.20451	1	16940	16940		49.554	7.5987	1	6526900	+		32781	17108	23833	24004	31938	31938					0.06716799534751772
LQNIVLPS	8	Unmodified	_LQNIVLPS_					0	0	0		ENST00000367104.7_1_6:158532036-158532303:-|nuORF	ENST00000367104.7_1_6:158532036-158532303:-|nuORF	ENST00000367104.7_1_6:158532036-158532303:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	883.3404541015625	1	883.524744	882.517468	-0.44229	-0.00039077	0.039022	3.4477E-05	-0.40327	-0.0003563	883.5246956775509	70.068	0.76238	70.803	70.437	71.2	0.73421					37	14	4	0	0	0	0.73563	1	26676	26676		44.407	0	1	28856000			32782	11078	23834	24005	31939	31939					0.07150972902854846
LQNIVLPS	8	Unmodified	_LQNIVLPS_					0	0	0		ENST00000367104.7_1_6:158532036-158532303:-|nuORF	ENST00000367104.7_1_6:158532036-158532303:-|nuORF	ENST00000367104.7_1_6:158532036-158532303:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	883.524744	882.517468	-0.16964	-0.00014988	0.42691	0.00037718	0.25727	0.0002273	883.5250201246834	70.82	0.71667	70.82	70.494	71.211	0	0.0087588	0.00016875	NaN	44.407	37	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28133000			32783	11078	23834	24005							0.07150972902854846
LQNKIRDTQ	9	Unmodified	_LQNKIRDTQ_					0	0	0		nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	MULTI-SECPEP	A375_MHC_IP_R1	1	372.9522705078125	3	372.543767	1114.60947	0.21064	7.8474E-05	0.27412	0.00010212	0.48476	0.0001806	372.5439292723629	33.065	0.3027	33.065	32.938	33.241	0					8	5	2	0	0	0	0.69507	1	10708	10708		3.5871	0	1	1195000			32784	3438	23835	24006	31940	31940					0.05675031249234053
LQNLLRTLR	9	Unmodified	_LQNLLRTLR_					0	0	0		ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	A375_MHC_IP_R1	1	376.971923828125	3	376.240018	1125.69823	0.30373	0.00011427	-2.5376	-0.00095475	-2.2339	-0.00084048	376.2398890791116	31.963	1.0199	31.963	31.465	32.485	0					63	19	5	0	0	0	0.6343	1	10180	10180		12.873	0.64502	1	21442000			32785	2172	23836	24007	31941	31941					0.14040491279547496
LQNRRLFQSLH	11	Unmodified	_LQNRRLFQSLH_					0	0	0		ENST00000576696.2_1_13:24041102-24041303:+|nuORF;ENST00000575689.4_1_13:24041048-24044692:+|nuORF	ENST00000576696.2_1_13:24041102-24041303:+|nuORF	ENST00000576696.2_1_13:24041102-24041303:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	706.4879760742188	2	706.399484	1410.78442	-0.81079	-0.00057274	-0.70324	-0.00049677	-1.514	-0.0010695	706.3992158185762	66.592	0.40707	66.592	66.377	66.785	0					13	7	3	0	0	0	0.73111	1	24161	24161		13.615	4.0709	1	1727900			32786	13636	23837	24008	31942	31942					0.09545451114263415
LQNRRLFQSLH	11	Unmodified	_LQNRRLFQSLH_					0	0	0		ENST00000576696.2_1_13:24041102-24041303:+|nuORF;ENST00000575689.4_1_13:24041048-24044692:+|nuORF	ENST00000576696.2_1_13:24041102-24041303:+|nuORF	ENST00000576696.2_1_13:24041102-24041303:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	706.399484	1410.78442	-0.91911	-0.00064926	-1.2136	-0.00085726	-2.1327	-0.0015065	706.3986681927307	65.691	0.5083	66.429	66.222	66.731	0.73811	-0.081589	-0.0003509	NaN	13.615	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1647000			32787	13636	23837	24008							0.09545451114263415
LQPHILRSR	9	Unmodified	_LQPHILRSR_					0	0	0		ENST00000521688.5_1_8:110356192-110356372:+|nuORF	ENST00000521688.5_1_8:110356192-110356372:+|nuORF	ENST00000521688.5_1_8:110356192-110356372:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	373.91802978515625	3	373.896363	1118.66726	-0.057361	-2.1447E-05	0.76172	0.0002848	0.70436	0.00026336	373.89674121634937	25.989	0.5583	26.649	26.5	27.058	0.65992					15	10	3	0	0	0	0.74597	1	8701	8701		5.4027	0	1	2270500			32788	13011	23838	24009	31943	31943					0.11267337965318802
LQPHILRSR	9	Unmodified	_LQPHILRSR_					0	0	0		ENST00000521688.5_1_8:110356192-110356372:+|nuORF	ENST00000521688.5_1_8:110356192-110356372:+|nuORF	ENST00000521688.5_1_8:110356192-110356372:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	373.896363	1118.66726	0.11365	4.2492E-05	0.20217	7.5592E-05	0.31582	0.00011808	373.89639592834135	26.965	0.39998	26.965	26.779	27.179	0	0.15812	-0.00017892	NaN	8.4443	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2558700			32789	13011	23838	24009							0.11267337965318802
LQPPPPTLH	9	Unmodified	_LQPPPPTLH_					0	0	0			REV__ENST00000476372.1_1_11:291984-293434:+|nuORF	REV__ENST00000476372.1_1_11:291984-293434:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	500.640380859375	2	500.284734	998.554916	-1.0334	-0.00051697	0.2015	0.00010081	-0.83186	-0.00041617	500.2845580471601	34	0.30309	34.752	34.5	34.803	0.75225					9	5	2	0	0	0	0.60917	1	12176	12176		13.906	0	1	1888400	+		32790	25158	23839	24010	31944	31944					0.05558064168462806
LQPRLGRW	8	Unmodified	_LQPRLGRW_					0	0	0			REV__ENST00000543196.6_1_12:51773598-51777285:-|nuORF	REV__ENST00000543196.6_1_12:51773598-51777285:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	513.6502685546875	2	513.303793	1024.59303	-0.37135	-0.00019062	-3.2705	-0.0016788	-3.6419	-0.0018694	513.302281452062	56.297	0.45611	56.297	56.092	56.548	0					13	8	3	0	0	0	0.90224	1	20156	20156		19.439	0	1	1226700	+		32791	25977	23840	24011	31945	31945					0.08171994873782751
LQPRRLRWRRT	11	Unmodified	_LQPRRLRWRRT_					0	0	0			REV__ENST00000298292.12_1_14:50100549-50100927:-|nuORF	REV__ENST00000298292.12_1_14:50100549-50100927:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	512.6952514648438	3	513.314803	1536.92258	-0.69125	-0.00035483	3.1046	0.0015937	2.4134	0.0012388	513.316304308486	84.662	0.15207	84.662	84.545	84.697	0					4	2	2	0	0	0	1.0011	1	30983	30983		1.3296	0.87513	1	1024200	+		32792	23400	23841	24012	31946	31946					0.17559619153394124
LQPSFPEILL	10	Unmodified	_LQPSFPEILL_					0	0	0		ENST00000452340.7_1_14:77746025-77787024:-|nuORF;ENSG00000009830|ENST00000261534|POMT2	ENST00000452340.7_1_14:77746025-77787024:-|nuORF	ENST00000452340.7_1_14:77746025-77787024:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	386.9480285644531	3	386.225264	1155.65396	-0.10925	-4.2193E-05	-0.28092	-0.0001085	-0.39016	-0.00015069	386.22500479593884	41.541	0.81721	41.541	41.215	42.032	0					34	15	3	0	0	0	0.70442	1	14309	14309		10.315	0.16466	1	11405000			32793	970	23842	24013	31947	31947					0.08236042342718974
LQPSYYYPYYC	11	Unmodified	_LQPSYYYPYYC_					0	0	0		ENSG00000109705|ENST00000382438|NKX3-2	ENSG00000109705|ENST00000382438|NKX3-2	ENSG00000109705|ENST00000382438|NKX3-2	MULTI-MSMS	A375_MHC_IP_R2	2	487.47979736328125	3	487.212806	1458.61659	-0.39282	-0.00019139	2.4385	0.0011881	2.0457	0.00099668	487.2138683752646	43.92	0.40359	44.689	44.48	44.883	0.76909					11	7	2	0	0	0	0.73679	1	16440	16440		2.4348	1.1051	1	1086600			32794	2886	23843	24014	31948	31948					-0.09437416985201708
LQQELEAFRS	10	Unmodified	_LQQELEAFRS_					0	0	0		PTPN23|p.G1183S|1|0.31|ENSG00000076201|chr3:47411345-47411345|G/A|missense_variant	PTPN23|p.G1183S|1|0.31|ENSG00000076201|chr3:47411345-47411345|G/A|missense_variant	PTPN23|p.G1183S|1|0.31|ENSG00000076201|chr3:47411345-47411345|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	407.63616943359375	3	407.547177	1219.6197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.456	1	22.456	21.956	22.956	0								0	0	0	0.15397	1	6031	6031		7.9454	0.33645	1				32795	15246	23844	24015	31949	31949					0.01867594183795518
LQQFLQQSRKH	11	Unmodified	_LQQFLQQSRKH_					0	0	0		ENST00000262178.6_1_7:158896520-158937431:-|nuORF	ENST00000262178.6_1_7:158896520-158937431:-|nuORF	ENST00000262178.6_1_7:158896520-158937431:-|nuORF	MSMS	A375_MHC_IP_R1	1	706.7861328125	2	706.891492	1411.76843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.02	1	104.02	103.52	104.52	0								0	0	0	0.16203	1	38196	38196		8.1555	3.6267	1				32796	10295	23845	24016	31950	31950					0.07901744877335659
LQQILVVKK	9	Unmodified	_LQQILVVKK_					0	0	0			REV__ENSG00000181433|ENST00000370709|SAGE1	REV__ENSG00000181433|ENST00000370709|SAGE1	MULTI-MSMS	A375_MHC_IP_R2	2	1069.6983642578125	1	1068.71394	1067.70667	0.12101	0.00012933	0.90971	0.00097222	1.0307	0.0011015	1068.7151487214153	119.33	3.3446	119.86	118.77	122.11	0.5321					85	65	2	0	0	0	0.75764	1	45891	45891		1.8442	0	1	1964999999.9999998	+		32797	21650	23846	24017	31951	31951					0.1755204519615745
LQQILVVKK	9	Unmodified	_LQQILVVKK_					0	0	0			REV__ENSG00000181433|ENST00000370709|SAGE1	REV__ENSG00000181433|ENST00000370709|SAGE1	MULTI-MATCH	A375_MHC_IP_R1	1		1	1068.71394	1067.70667	-0.060874	-6.5057E-05	1.3751	0.0014696	1.3142	0.0014045	1068.7155484423372	120.24	4.7155	120.24	117.31	122.02	0	0.19005	0.00026406	NaN	1.8442	117	92	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1349300000	+		32798	21650	23846	24017							0.1755204519615745
LQQILVVKK	9	Unmodified	_LQQILVVKK_					0	0	0			REV__ENSG00000181433|ENST00000370709|SAGE1	REV__ENSG00000181433|ENST00000370709|SAGE1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	1068.71394	1067.70667	0.12101	0.00012933	0.90971	0.00097222	1.0307	0.0011015	1068.7151487214153	119.33	3.3446	119.86	118.77	122.11	0.5321	-0.19005	-0.00023329	NaN	1.8442	85	65	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1964999999.9999998	+		32799	21650	23846	24017							0.1755204519615745
LQQLILQQI	9	Unmodified	_LQQLILQQI_					0	0	0		ENSG00000183434|ENST00000310125|TFDP3	ENSG00000183434|ENST00000310125|TFDP3	ENSG00000183434|ENST00000310125|TFDP3	MULTI-MSMS	A375_MHC_IP_R1	1	366.9549865722656	3	366.229008	1095.66519	0.24947	9.1363E-05	-0.052815	-1.9342E-05	0.19665	7.2021E-05	366.2289411040749	50.219	0.46068	50.219	49.998	50.459	0					21	8	3	0	0	0	0.69884	1	17700	17700		7.1017	0	1	2833700			32800	8494	23847	24018	31952	31952					0.12118864436843069
LQQLILQQI	9	Unmodified	_LQQLILQQI_					0	0	0		ENSG00000183434|ENST00000310125|TFDP3	ENSG00000183434|ENST00000310125|TFDP3	ENSG00000183434|ENST00000310125|TFDP3	MULTI-SECPEP	A375_MHC_IP_R2	2	366.9550476074219	3	366.229008	1095.66519	-0.17236	-6.3124E-05	0.43964	0.00016101	0.26728	9.7884E-05	366.2290693914353	49.393	0.60645	50.151	49.741	50.348	0.75737					15	11	2	0	0	0	0.76827	1	18415	18415		4.1895	0	1	2666500			32801	8494	23847	24018	31953	31953					0.12118864436843069
LQQQQPRRRQ	10	Unmodified	_LQQQQPRRRQ_					0	0	0		ENSG00000176769|ENST00000368642|TCERG1L	ENSG00000176769|ENST00000368642|TCERG1L	ENSG00000176769|ENST00000368642|TCERG1L	MULTI-MSMS	A375_MHC_IP_R1	1	669.77978515625	2	669.379083	1336.74361	-0.88659	-0.00059347	1.072	0.00071759	0.18543	0.00012413	669.3792301817907	135.5	1.0198	135.5	135.03	136.05	0					39	19	3	0	0	0	0.72416	1	52242	52242		1.4819	0	1	2099600			32802	8032	23848	24019	31954	31954					0.08871109794631593
LQRELDEETD	10	Unmodified	_LQRELDEETD_					0	0	0			REV__ENSG00000178913|ENST00000313368|TAF7	REV__ENSG00000178913|ENST00000313368|TAF7	MSMS	A375_MHC_IP_R1	1	416.4305725097656	3	416.529851	1246.56773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.098	1	37.098	36.598	37.598	0								0	0	0	0.15531	1	12478	12478		1.7423	0	1		+		32803	21524	23849	24020	31955	31955					-0.04569614020624613
LQRFLQILK	9	Unmodified	_LQRFLQILK_					0	0	0		ENST00000489207.1_1_14:74766721-74769615:-|nuORF;ENST00000557554.5_1_14:74757154-74769615:-|nuORF;ENST00000493752.5_1_14:74766202-74769615:-|nuORF;ENST00000477803.5_1_14:74764631-74769615:-|nuORF;ABCD4|p.F315Lfs*76|1|0.16|ENSG00000119688|chr14:74292636-74292637|-/G|frameshift_variant;ENSG00000119688|ENST00000356924|ABCD4	ENST00000489207.1_1_14:74766721-74769615:-|nuORF	ENST00000489207.1_1_14:74766721-74769615:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	386.6250915527344	3	386.916764	1157.72846	0.054885	2.1236E-05	0.33036	0.00012782	0.38524	0.00014906	386.91687732462066	41.858	0.7638	41.858	41.419	42.183	0					39	14	4	0	0	0	0.80869	1	14355	14355		1.9064	1.9064	1	10385000			32804	17	23850	24021	31956	31956					0.15590849944737784
LQRFLQILK	9	Unmodified	_LQRFLQILK_					0	0	0		ENST00000489207.1_1_14:74766721-74769615:-|nuORF;ENST00000557554.5_1_14:74757154-74769615:-|nuORF;ENST00000493752.5_1_14:74766202-74769615:-|nuORF;ENST00000477803.5_1_14:74764631-74769615:-|nuORF;ABCD4|p.F315Lfs*76|1|0.16|ENSG00000119688|chr14:74292636-74292637|-/G|frameshift_variant;ENSG00000119688|ENST00000356924|ABCD4	ENST00000489207.1_1_14:74766721-74769615:-|nuORF	ENST00000489207.1_1_14:74766721-74769615:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	387.31683349609375	3	386.916764	1157.72846	-0.35226	-0.00013629	0.24348	9.4206E-05	-0.10878	-4.2088E-05	386.9168085171719	40.907	0.76277	41.682	41.285	42.047	0.77451					34	14	3	0	0	0	0.46357	2	15131	15026;15131		21.59	2.2282	1	6153300			32805	17	23850	24021	31957;31958	31958					0.15590849944737784
LQRKGISRYE	10	Unmodified	_LQRKGISRYE_					0	0	0		nc|ENSG00000164465|Q8N8Z6-2|DCBLD1;ENSG00000164465|ENST00000338728|DCBLD1;ENST00000533453.5_1_6:117853431-117860057:+|nuORF	nc|ENSG00000164465|Q8N8Z6-2|DCBLD1;ENST00000533453.5_1_6:117853431-117860057:+|nuORF	nc|ENSG00000164465|Q8N8Z6-2|DCBLD1	MULTI-MSMS	A375_MHC_IP_R2	2	625.7528076171875	2	625.354211	1248.69387	-0.69113	-0.0004322	-1.48	-0.00092553	-2.1711	-0.0013577	625.3528781296932	134.31	1.0168	134.45	134.03	135.05	0.13901					36	19	3	0	0	0	0.72078	1	52859	52859		2.9952	2.9952	1	3150300			32806	6842;13199	23851	24022	31959	31959					0.07946982065982411
LQRKGISRYE	10	Unmodified	_LQRKGISRYE_					0	0	0		nc|ENSG00000164465|Q8N8Z6-2|DCBLD1;ENSG00000164465|ENST00000338728|DCBLD1;ENST00000533453.5_1_6:117853431-117860057:+|nuORF	nc|ENSG00000164465|Q8N8Z6-2|DCBLD1;ENST00000533453.5_1_6:117853431-117860057:+|nuORF	nc|ENSG00000164465|Q8N8Z6-2|DCBLD1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	625.354211	1248.69387	-0.81179	-0.00050765	-1.5753	-0.00098514	-2.3871	-0.0014928	625.353030738275	134.34	0.96388	134.34	133.91	134.88	0	-0.052241	-3.9779E-05	NaN	2.9952	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3545100			32807	6842;13199	23851	24022							0.07946982065982411
LQRKKKLVS	9	Unmodified	_LQRKKKLVS_					0	0	0		ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	MULTI-MSMS	A375_MHC_IP_R1	1	1099.711181640625	1	1099.73099	1098.72371	-0.14018	-0.00015416	-0.2427	-0.0002669	-0.38288	-0.00042107	1099.7330169467123	120.55	0.40224	120.55	120.2	120.6	0					8	5	2	0	0	0	0.75032	1	44622	44622		1.8442	0	1	25717000			32808	9864	23852	24023	31960	31960					0.17829965801979597
LQRKLGRKLN	10	Unmodified	_LQRKLGRKLN_					0	0	0		ENSG00000150628|ENST00000280191|SPATA4	ENSG00000150628|ENST00000280191|SPATA4	ENSG00000150628|ENST00000280191|SPATA4	MULTI-SECPEP	A375_MHC_IP_R1	1	408.9663391113281	3	409.266568	1224.77787	-0.24969	-0.00010219	2.7868	0.0011406	2.5371	0.0010384	409.2674928998653	24.372	0.15225	24.372	24.245	24.397	0					4	2	2	0	0	0	0.93578	1	6859	6859		3.3196	0	1	1057800			32809	5853	23853	24024	31961	31961					0.17447557953573778
LQRLADEQRQL	11	Unmodified	_LQRLADEQRQL_					0	0	0		nc|ENSG00000163554|P02549-2|SPTA1;ENSG00000163554|ENST00000643759|SPTA1	nc|ENSG00000163554|P02549-2|SPTA1	nc|ENSG00000163554|P02549-2|SPTA1	MULTI-MSMS	A375_MHC_IP_R2	2	457.1901550292969	3	457.256397	1368.74736	-0.32077	-0.00014667	-0.32396	-0.00014813	-0.64473	-0.00029481	457.59070120923286	27.161	0.15348	27.839	27.741	27.895	0.67857					4	2	2	0	0	0	0.73064	1	9237	9237		8.2864	1.2493	1	641450			32810	6683	23854	24025	31962	31962					0.07773734777833852
LQRLQLSRQ	9	Unmodified	_LQRLQLSRQ_					0	0	0		nc|ENSG00000105298|Q8WUQ7-2|CACTIN;ENSG00000105298|ENST00000429344|CACTIN	nc|ENSG00000105298|Q8WUQ7-2|CACTIN	nc|ENSG00000105298|Q8WUQ7-2|CACTIN	MULTI-SECPEP	A375_MHC_IP_R2	2	571.6793212890625	2	571.343646	1140.67274	-0.99714	-0.00056971	-0.056873	-3.2494E-05	-1.054	-0.0006022	571.3438901781077	29.511	0.30353	30.21	30.032	30.335	0.69872					8	5	2	0	0	0	0.75164	1	10311	10311		5.7319	0.43497	1	1279000			32811	2588	23855	24026	31963	31963					0.10803016757108708
LQRLRRQHAR	10	Unmodified	_LQRLRRQHAR_					0	0	0			REV__ENST00000453355.2_1_17:40214759-40215074:-|nuORF	REV__ENST00000453355.2_1_17:40214759-40215074:-|nuORF	MSMS	A375_MHC_IP_R1	1	667.3263549804688	2	667.405435	1332.79632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.03	1	148.03	147.53	148.53	0								0	0	0	0.15629	1	56540	56540		0.40072	0	1		+		32812	22031	23856	24027	31964	31964					0.14323112648116876
LQRPGAKTPYL	11	Unmodified	_LQRPGAKTPYL_					0	0	0			REV__ENSG00000159495|ENST00000452443|TGM7	REV__ENSG00000159495|ENST00000452443|TGM7	MULTI-MSMS	A375_MHC_IP_R1	1	415.2788391113281	3	415.243429	1242.70846	0.18138	7.5315E-05	0.23285	9.6687E-05	0.41422	0.000172	415.24340554503556	41.882	0.45753	41.882	41.725	42.183	0					17	8	3	0	0	0	0.72773	1	14509	14509		11.065	0.75005	1	4077000	+		32813	20126	23857	24028	31965	31965					0.09681054214138385
LQRRGISKE	9	Unmodified	_LQRRGISKE_					0	0	0		tr|U7SGH4|U7SGH4_FUSNUToprimdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02307PE=4SV=1	tr|U7SGH4|U7SGH4_FUSNUToprimdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02307PE=4SV=1	tr|U7SGH4|U7SGH4_FUSNUToprimdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02307PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	1086.6165771484375	1	1086.63782	1085.63054	0.10302	0.00011194	-3.9454	-0.0042872	-3.8424	-0.0041753	1086.6357041260458	123.96	0.65824	124.29	123.79	124.44	0.32969					19	12	2	0	0	0	0.70307	1	47698	47698		6.7232	0.51738	1	23922000			32814	29406	23858	24029	31966	31966					0.09115041348741215
LQRSVGLW	8	Unmodified	_LQRSVGLW_					0	0	0			REV__PMEL|p.R40K|1|0.27|ENSG00000185664|chr12:55961690-55961690|C/T|missense_variant	REV__PMEL|p.R40K|1|0.27|ENSG00000185664|chr12:55961690-55961690|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	479.67730712890625	2	479.777077	957.5396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.95	1	111.95	111.45	112.45	0								0	0	0	0.16876	1	41038	41038		5.7604	1.4312	1		+		32815	15697	23859	24030	31967	31967					0.05913197371273782
LQRVEMTW	8	Unmodified	_LQRVEMTW_					0	0	0		TMEM59L|p.V207M|1|0.43|ENSG00000105696|chr19:18617057-18617057|G/A|missense_variant	TMEM59L|p.V207M|1|0.43|ENSG00000105696|chr19:18617057-18617057|G/A|missense_variant	TMEM59L|p.V207M|1|0.43|ENSG00000105696|chr19:18617057-18617057|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	355.4599609375	3	354.851543	1061.5328	-0.35078	-0.00012447	0.18944	6.7224E-05	-0.16133	-5.7249E-05	354.85161427701746	36.053	0.51132	36.817	36.587	37.099	0.76338					14	9	2	0	0	0	0.972	1	13179	13179		1.4819	0	1	4957300			32816	29364	23860	24031	31968	31968					0.004495164283980557
LQRWEHLK	8	Unmodified	_LQRWEHLK_					0	0	0		ENSG00000198056|ENST00000338193|PRIM1	ENSG00000198056|ENST00000338193|PRIM1	ENSG00000198056|ENST00000338193|PRIM1	MULTI-SECPEP	A375_MHC_IP_R1	1	370.5970764160156	3	370.545331	1108.61416	0.4288	0.00015889	-0.49673	-0.00018406	-0.067925	-2.5169E-05	370.87932630535016	28.599	0.30447	28.599	28.339	28.643	0					6	5	2	0	0	0	0.972	1	8803	8803		6.2058	0	1	703620			32817	9225	23861	24032	31969	31969					0.06419960182643081
LQRWWPIPIIK	11	Unmodified	_LQRWWPIPIIK_					0	0	0		ENST00000518242.5_1_8:40554805-40644221:-|nuORF	ENST00000518242.5_1_8:40554805-40644221:-|nuORF	ENST00000518242.5_1_8:40554805-40644221:-|nuORF	MSMS	A375_MHC_IP_R1	1	725.43212890625	2	725.440089	1448.86563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.89	1	123.89	123.39	124.39	0								0	0	0	0.16203	1	46413	46413		8.1555	2.8586	1				32818	12971	23862	24033	31970	31970					0.15914758824283126
LQSELVGQLY	10	Unmodified	_LQSELVGQLY_					0	0	0		nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;nc|ENSG00000087470|O00429-7|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	MULTI-SECPEP	A375_MHC_IP_R2	2	575.710205078125	2	575.311146	1148.60774	-0.23839	-0.00013715	-1.2362	-0.00071122	-1.4746	-0.00084837	575.3105144356264	80.56	0.8635	81.305	80.81	81.673	0.74474					21	16	2	0	0	0	0.78163	1	30594	30594		41.956	12.115	1	1534600			32819	1874	23863	24034	31971	31971					0.039379774406370416
LQSERRLQ	8	Unmodified	_LQSERRLQ_					0	0	0		nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1;FZR1|p.G376Rfs*4|1|0.37|ENSG00000105325|chr19:3532526-3532527|-/G|frameshift_variant	nc|ENSG00000105325|Q9UM11-3|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	MULTI-SECPEP	A375_MHC_IP_R2	2	515.6929321289062	2	515.293622	1028.57269	-1.1566	-0.00059601	0.45353	0.0002337	-0.7031	-0.0003623	515.2939184478593	26.368	0.40534	27.028	26.857	27.262	0.65992					16	7	3	0	0	0	0.9187	1	8912	8912		25.399	6.1423	1	6610600			32820	2590	23864	24035	31972	31972					0.05954779423313994
LQSFVITLT	9	Unmodified	_LQSFVITLT_					0	0	0			REV__nc|ENSG00000166946|O95273-2|CCNDBP1	REV__nc|ENSG00000166946|O95273-2|CCNDBP1	MSMS	A375_MHC_IP_R2	2	511.207275390625	2	511.30005	1020.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.133	1	92.872	92.372	93.372	0.73902								0	0	0	0.11922	1	35040	35040		36.127	1.7253	1		+		32821	20720	23865	24036	31973	31973					0.07607797762852897
LQSGAQRAYFL	11	Unmodified	_LQSGAQRAYFL_					0	0	0			REV__nc|ENSG00000135439|Q99490|AGAP2;REV__nc|ENSG00000135439|Q99490-2|AGAP2	REV__nc|ENSG00000135439|Q99490-2|AGAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	418.287353515625	3	418.559417	1252.65642	-0.13675	-5.7238E-05	0.012534	5.2462E-06	-0.12422	-5.1991E-05	418.55932866543753	67.092	0.35825	67.092	66.938	67.297	0					15	6	3	0	0	0	0.84606	1	24351	24351		12.856	0	1	1436200	+		32822	27241;18853	23866	24037	31974	31974					0.04019890800373105
LQSGGLIY	8	Unmodified	_LQSGGLIY_					0	0	0			REV__nc|ENSG00000122550|Q8IXQ5-5|KLHL7	REV__nc|ENSG00000122550|Q8IXQ5-5|KLHL7	MULTI-SECPEP	A375_MHC_IP_R1	1	426.16644287109375	2	425.737086	849.459619	0.05693	2.4237E-05	-0.13996	-5.9586E-05	-0.083029	-3.5349E-05	425.7370658422272	35.407	0.61157	35.407	35.218	35.83	0					16	11	2	0	0	0	0.972	1	11908	11908		4.756	0	1	1729900	+		32823	18214	23867	24038	31975	31975					0.02886710977418261
LQSGGLIY	8	Unmodified	_LQSGGLIY_					0	0	0			REV__nc|ENSG00000122550|Q8IXQ5-5|KLHL7	REV__nc|ENSG00000122550|Q8IXQ5-5|KLHL7	MULTI-MATCH	A375_MHC_IP_R2	2		2	425.737086	849.459619	-0.36495	-0.00015537	0.39463	0.00016801	0.029679	1.2635E-05	425.7371723861338	34.668	0.45483	35.431	35.223	35.677	0.76338	0.012035	0.00027537	NaN	4.756	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1172200	+		32824	18214	23867	24038							0.02886710977418261
LQSIQAQW	8	Unmodified	_LQSIQAQW_					0	0	0		SPTBN5|p.Q2777Rfs*33|1|0.22|ENSG00000137877|chr15:41857606-41857609|CTGG/-|frameshift_variant;ENSG00000137877|ENST00000320955|SPTBN5	SPTBN5|p.Q2777Rfs*33|1|0.22|ENSG00000137877|chr15:41857606-41857609|CTGG/-|frameshift_variant	SPTBN5|p.Q2777Rfs*33|1|0.22|ENSG00000137877|chr15:41857606-41857609|CTGG/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	487.19024658203125	2	487.258717	972.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.022	1	63.022	62.522	63.522	0								0	0	0	0.16876	1	22771	22771		17.113	1.2657	1				32825	4933	23868	24039	31976	31976					0.015529007547002038
LQSKRYEEIK	10	Unmodified	_LQSKRYEEIK_					0	0	0			REV__tr|U7T153|U7T153_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00900PE=4SV=1	REV__tr|U7T153|U7T153_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00900PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	432.6583251953125	3	431.910227	1292.70885	-0.27014	-0.00011668	0.0032192	1.3904E-06	-0.26692	-0.00011529	431.9102510759585	36.962	0.65701	36.962	36.644	37.301	0					30	12	3	0	0	0	0.72112	1	12327	12327		2.8433	0.59056	1	11719000	+		32826	28696	23869	24040	31977	31977					0.07420429143303409
LQSLEAAEI	9	Unmodified	_LQSLEAAEI_					0	0	0		ENSG00000144589|ENST00000456909|STK11IP;ENST00000473899.1_1_2:220473145-220474007:+|nuORF;ENST00000475396.5_1_2:220462865-220474366:+|nuORF	ENSG00000144589|ENST00000456909|STK11IP	ENSG00000144589|ENST00000456909|STK11IP	MULTI-SECPEP	A375_MHC_IP_R1	1	487.6634521484375	2	487.263665	972.512776	0.21425	0.00010439	-0.60648	-0.00029551	-0.39223	-0.00019112	487.26324136877344	45.004	0.90961	45.004	44.727	45.636	0					39	17	3	0	0	0	0.31606	1	15705	15705		32.786	0	1	6828000			32827	5495	23870	24041	31978	31978					0.02542043969401675
LQSLEAAEI	9	Unmodified	_LQSLEAAEI_					0	0	0		ENSG00000144589|ENST00000456909|STK11IP;ENST00000473899.1_1_2:220473145-220474007:+|nuORF;ENST00000475396.5_1_2:220462865-220474366:+|nuORF	ENSG00000144589|ENST00000456909|STK11IP	ENSG00000144589|ENST00000456909|STK11IP	MULTI-SECPEP	A375_MHC_IP_R2	2	487.6629638671875	2	487.263665	972.512776	-0.5547	-0.00027029	-0.23801	-0.00011598	-0.79272	-0.00038626	487.26339653165905	44.333	0.96571	45.102	44.732	45.698	0.76909					46	18	3	0	0	0	0.13064	1	16476	16476		47.749	0	1	7261000			32828	5495	23870	24041	31979	31979					0.02542043969401675
LQSLQEQL	8	Unmodified	_LQSLQEQL_					0	0	0			REV__ENST00000478344.6_1_9:140240296-140248823:-|nuORF	REV__ENST00000478344.6_1_9:140240296-140248823:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	480.4716796875	2	479.763832	957.513111	-0.74546	-0.00035764	-0.073345	-3.5188E-05	-0.8188	-0.00039283	479.76373307243455	26.563	0.55414	26.563	26.423	26.978	0					19	10	2	0	0	0	0.5161	1	8045	8045		45.7	0	1	4324000	+		32829	22033	23871	24042	31980	31980					0.032654636892857525
LQSQLLLLK	9	Unmodified	_LQSQLLLLK_					0	0	0			REV__nc|ENSG00000095066|Q96ED9-2|HOOK2	REV__nc|ENSG00000095066|Q96ED9-2|HOOK2	MULTI-SECPEP	A375_MHC_IP_R1	1	528.2162475585938	2	528.344792	1054.67503	-0.33127	-0.00017502	-0.44139	-0.00023321	-0.77266	-0.00040823	528.3443845171344	78.812	0.25261	78.812	78.657	78.909	0					6	4	2	0	0	0	0.71541	1	28775	28775		16.942	0	1	1065000	+		32830	16988	23872	24043	31981	31981					0.14988052442231492
LQSRRQRR	8	Unmodified	_LQSRRQRR_					0	0	0			REV__ENST00000610263.1_1_10:93667965-93668834:+|nuORF	REV__ENST00000610263.1_1_10:93667965-93668834:+|nuORF	MSMS	A375_MHC_IP_R2	2	367.280517578125	3	367.223362	1098.64826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.223	1	25.867	25.367	26.367	0.64368								0	0	0	0.16876	1	8404	8404		16.149	3.2765	1		+		32831	26576	23873	24044	31982	31982					0.10287801394269991
LQSRVESFLT	10	Unmodified	_LQSRVESFLT_					0	0	0		TMEM132D|p.I84T|1|0.51|ENSG00000151952|chr12:129700527-129700527|A/G|missense_variant	TMEM132D|p.I84T|1|0.51|ENSG00000151952|chr12:129700527-129700527|A/G|missense_variant	TMEM132D|p.I84T|1|0.51|ENSG00000151952|chr12:129700527-129700527|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	394.61163330078125	3	393.883789	1178.62954	-0.22905	-9.0219E-05	-0.17117	-6.7421E-05	-0.40022	-0.00015764	393.8836697783115	40.282	0.20291	41.056	40.98	41.183	0.77451					5	3	2	0	0	0	0.92199	1	14928	14928		7.4771	0	1	973130			32832	29360	23874	24045	31983	31983					0.04736782189183941
LQSSTEHISDY	11	Unmodified	_LQSSTEHISDY_					0	0	0		SRGAP3|p.P838S|1|0.31|ENSG00000196220|chr3:8992952-8992952|G/A|missense_variant	SRGAP3|p.P838S|1|0.31|ENSG00000196220|chr3:8992952-8992952|G/A|missense_variant	SRGAP3|p.P838S|1|0.31|ENSG00000196220|chr3:8992952-8992952|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	641.7232666015625	2	640.293682	1278.57281	-0.43379	-0.00027775	0.40295	0.00025801	-0.030832	-1.9742E-05	640.2938222987516	78.927	1.0651	78.927	78.251	79.316	0					57	20	5	0	0	0	0.66366	1	28760	28760		18.373	3.9677	1	34858000			32833	29245	23875	24046	31984	31984					-0.055333101579890354
LQSSTEHISDY	11	Unmodified	_LQSSTEHISDY_					0	0	0		SRGAP3|p.P838S|1|0.31|ENSG00000196220|chr3:8992952-8992952|G/A|missense_variant	SRGAP3|p.P838S|1|0.31|ENSG00000196220|chr3:8992952-8992952|G/A|missense_variant	SRGAP3|p.P838S|1|0.31|ENSG00000196220|chr3:8992952-8992952|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	640.6932373046875	2	640.293682	1278.57281	-0.7055	-0.00045173	-0.092525	-5.9243E-05	-0.79803	-0.00051097	640.293596890044	78.415	0.81203	79.159	78.728	79.54	0.74474					51	15	4	0	0	0	0.18643	3	29684	29684;29749;29889		55.503	20.571	1	31635000			32834	29245	23875	24046	31985;31986;31987	31985					-0.055333101579890354
LQSTRDGPPP	10	Unmodified	_LQSTRDGPPP_					0	0	0			REV__nc|ENSG00000170262|Q8TCY5-3|MRAP	REV__nc|ENSG00000170262|Q8TCY5-3|MRAP	MULTI-SECPEP	A375_MHC_IP_R1	1	534.174560546875	2	534.277638	1066.54072	-0.28984	-0.00015485	-1.1645	-0.00062216	-1.4543	-0.00077701	534.2778020985072	48.485	0.70929	48.485	48.071	48.78	0					20	13	2	0	0	0	0.70528	1	17103	17103		26.268	9.1552	1	1786400	+		32835	20979	23876	24047	31988	31988					0.010113669495240174
LQTEILYQRVN	11	Unmodified	_LQTEILYQRVN_					0	0	0		nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	MULTI-MSMS	A375_MHC_IP_R2	2	459.9890441894531	3	459.589265	1375.74596	-0.26811	-0.00012322	-0.47127	-0.00021659	-0.73939	-0.00033981	459.5890456103195	44.128	0.80987	44.897	44.58	45.39	0.7691					33	15	3	0	0	0	0.73154	1	16445	16445		7.4291	0	1	3023600			32836	5927	23877	24048	31989	31989					0.07312100689091494
LQTILSILV	9	Unmodified	_LQTILSILV_					0	0	0		AGTPBP1|p.T83_N85del|1|0.5|ENSG00000135049|chr9:85678368-85678376|TATTAAGTG/-|inframe_deletion	AGTPBP1|p.T83_N85del|1|0.5|ENSG00000135049|chr9:85678368-85678376|TATTAAGTG/-|inframe_deletion	AGTPBP1|p.T83_N85del|1|0.5|ENSG00000135049|chr9:85678368-85678376|TATTAAGTG/-|inframe_deletion	MULTI-MSMS	A375_MHC_IP_R2	2	999.827880859375	1	999.644859	998.637583	0.10717	0.00010713	-0.36318	-0.00036305	-0.25601	-0.00025592	999.6441677882666	134.12	0.1554	134.29	134.21	134.37	0.16487					4	2	2	0	0	0	0.04447	1	52770	52770		66.457	1.2217	1	1610600			32837	85	23878	24049	31990	31990					0.1382096117662286
LQTKKMAY	8	Unmodified	_LQTKKMAY_					0	0	0			REV__ENSG00000137815|ENST00000389629|RTF1	REV__ENSG00000137815|ENST00000389629|RTF1	MULTI-SECPEP	A375_MHC_IP_R2	2	492.4509582519531	2	491.773145	981.531738	-0.53702	-0.00026409	-0.54834	-0.00026966	-1.0854	-0.00053375	491.77232176044674	31.783	0.50691	32.52	32.35	32.857	0.73691					12	9	2	0	0	0	0.96296	1	11364	11364		15.768	6.4208	1	1042000	+		32838	19037	23879	24050	31991	31991					0.04023302059488287
LQTSPCDQY	9	Unmodified	_LQTSPCDQY_					0	0	0		nc|ENSG00000184347|O75094-3|SLIT3;ENSG00000184347|ENST00000519560|SLIT3;nc|ENSG00000184347|O75094-4|SLIT3	nc|ENSG00000184347|O75094-3|SLIT3	nc|ENSG00000184347|O75094-3|SLIT3	MULTI-MSMS	A375_MHC_IP_R1	1	527.6773681640625	2	527.729132	1053.44371	-0.50274	-0.00026531	0.21203	0.00011189	-0.29071	-0.00015342	527.7292173672507	60.006	0.76313	60.006	59.803	60.566	0					21	14	2	0	0	0	0.60101	1	21768	21768		14.838	1.7958	1	1223900			32839	8574	23880	24051	31992	31992					-0.08087363321783414
LQVENCTQL	9	Unmodified	_LQVENCTQL_					0	0	0		ENSG00000167653|ENST00000301258|PSCA	ENSG00000167653|ENST00000301258|PSCA	ENSG00000167653|ENST00000301258|PSCA	MSMS	A375_MHC_IP_R1	1	524.1845703125	2	524.260599	1046.50665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.65	1	106.65	106.15	107.15	0								0	0	0	0.1535	1	39144	39144		15.847	1.0089	1				32840	7205	23881	24052	31993	31993					-0.014747975337513708
LQVERVPV	8	Unmodified	_LQVERVPV_					0	0	0		ENST00000298892.9_1_12:30906843-30907164:-|nuORF	ENST00000298892.9_1_12:30906843-30907164:-|nuORF	ENST00000298892.9_1_12:30906843-30907164:-|nuORF	MSMS	A375_MHC_IP_R2	2	470.20513916015625	2	470.284734	938.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.738	1	71.472	70.972	71.972	0.73421								0	0	0	0.16876	1	26817	26817		24.674	1.5255	1				32841	10524	23882	24053	31994	31994					0.08318064168474848
LQVKPSANDQ	10	Unmodified	_LQVKPSANDQ_					0	0	0		BPIFB1|p.E107K|2|0.16|ENSG00000125999|chr20:33289946-33289946|G/A|missense_variant;ENSG00000125999|ENST00000253354|BPIFB1	BPIFB1|p.E107K|2|0.16|ENSG00000125999|chr20:33289946-33289946|G/A|missense_variant	BPIFB1|p.E107K|2|0.16|ENSG00000125999|chr20:33289946-33289946|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	366.63250732421875	3	367.196256	1098.56694	0.22359	8.2103E-05	0.24292	8.92E-05	0.46652	0.0001713	367.19625548695046	42.836	1.115	43.608	43.218	44.333	0.7724					38	21	3	0	0	0	0.91909	1	15880	15880		3.0723	0	1	32570000			32842	245	23883	24054	31995	31995					0.02159636120995856
LQVRNLVFTGI	11	Unmodified	_LQVRNLVFTGI_					0	0	0		SCN5A|p.G752R|1|0.24|ENSG00000183873|chr3:38597737-38597737|C/T|missense_variant	SCN5A|p.G752R|1|0.24|ENSG00000183873|chr3:38597737-38597737|C/T|missense_variant	SCN5A|p.G752R|1|0.24|ENSG00000183873|chr3:38597737-38597737|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	421.2564392089844	3	420.587195	1258.73976	-0.1929	-8.1133E-05	0.052298	2.1996E-05	-0.14061	-5.9137E-05	420.5871969712938	36.785	0.45464	36.785	36.541	36.996	0					29	8	4	0	0	0	0.67023	1	12420	12420		17.863	2.906	1	15128000			32843	29117	23884	24055	31996	31996					0.12073627248219054
LQVSHGAPY	9	Unmodified	_LQVSHGAPY_					0	0	0			REV__ENSG00000221937|ENST00000408947|TAS2R40	REV__ENSG00000221937|ENST00000408947|TAS2R40	MULTI-MSMS	A375_MHC_IP_R2	2	486.21807861328125	2	486.250892	970.48723	-0.43474	-0.00021139	-0.56373	-0.00027411	-0.99847	-0.00048551	486.25047676220527	44.088	0.4042	44.858	44.53	44.934	0.7691					10	7	2	0	0	0	0.60101	1	16346	16346		14.838	0.93222	1	1626200	+		32844	22696	23885	24056	31997	31997					0.0008061423766321241
LQWKKKHFRLW	11	Unmodified	_LQWKKKHFRLW_					0	0	0			REV__ENSG00000177084|ENST00000320574|POLE	REV__ENSG00000177084|ENST00000320574|POLE	MSMS	A375_MHC_IP_R2	2	524.001708984375	3	523.977017	1568.90922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.38	1	104.14	103.64	104.64	0.76428								0	0	0	0.16338	1	39151	39151		1.1098	0.65524	1		+		32845	21436	23886	24057	31998	31998					0.14752368321433096
LQWLRRWLRFL	11	Unmodified	_LQWLRRWLRFL_					0	0	0		ENST00000341418.9_1_15:68114320-68117168:+|nuORF	ENST00000341418.9_1_15:68114320-68117168:+|nuORF	ENST00000341418.9_1_15:68114320-68117168:+|nuORF	MSMS	A375_MHC_IP_R1	1	529.6979370117188	3	529.652533	1585.93577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.557	1	95.557	95.057	96.057	0								0	0	0	0.16309	1	35123	35123		2.6312	1.1761	1				32846	10868	23887	24058	31999	31999					0.16624057212766274
LQWRSLYRRII	11	Unmodified	_LQWRSLYRRII_					0	0	0			REV__ENST00000427635.6_1_10:69750117-69750686:-|nuORF	REV__ENST00000427635.6_1_10:69750117-69750686:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	752.8471069335938	2	752.448977	1502.8834	-0.68719	-0.00051708	-0.74948	-0.00056394	-1.4367	-0.001081	752.4484695145645	143.64	0.35187	143.66	143.54	143.89	0.024414					8	6	2	0	0	0	0.73924	1	56158	56158		0.35063	0	1	451560	+		32847	24669	23888	24059	32000	32000					0.15207474079147687
LQWTKTYLM	9	Unmodified	_LQWTKTYLM_					0	0	0			REV__ENST00000466493.5_1_10:70100925-70105500:-|nuORF	REV__ENST00000466493.5_1_10:70100925-70105500:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	394.6243896484375	3	395.210849	1182.61072	-0.087976	-3.4769E-05	3.3093	0.0013079	3.2213	0.0012731	395.21183552721976	42.007	0.50793	42.007	41.725	42.233	0					10	9	2	0	0	0	0.77948	1	14548	14548		3.8763	0	1	1281800	+		32848	25039	23889	24060	32001	32001					0.026715292937524282
LQWYYYSLRFY	11	Unmodified	_LQWYYYSLRFY_					0	0	0		nc|ENSG00000120498|Q8IYF3|TEX11;ENSG00000120498|ENST00000374333|TEX11;nc|ENSG00000120498|Q8IYF3-2|TEX11	nc|ENSG00000120498|Q8IYF3|TEX11	nc|ENSG00000120498|Q8IYF3|TEX11	MSMS	A375_MHC_IP_R2	2	534.6657104492188	3	534.59776	1600.77145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.385	1	57.135	56.635	57.635	0.75015								0	0	0	0.16334	1	21313	21313		1.3296	0	1				32849	3666	23890	24061	32002	32002					-0.004904247884951474
LQYDGDEKL	9	Unmodified	_LQYDGDEKL_					0	0	0			REV__ENSG00000027001|ENST00000382172|MIPEP	REV__ENSG00000027001|ENST00000382172|MIPEP	MULTI-MSMS	A375_MHC_IP_R1	1	540.661376953125	2	540.764029	1079.5135	-0.43345	-0.00023439	0.76553	0.00041397	0.33209	0.00017958	540.7638666598448	45.747	1.3159	45.747	44.98	46.295	0					82	25	5	0	0	0	0.63811	1	15802	15802		12.532	0.89125	1	39975000	+		32850	16290	23891	24062	32003	32003					-0.023071613815318415
LQYVQSLGLKE	11	Unmodified	_LQYVQSLGLKE_					0	0	0			REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1	REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	426.9750671386719	3	426.574844	1276.7027	-0.45567	-0.00019438	0.78401	0.00033444	0.32834	0.00014006	426.5751632222111	57.825	0.3562	58.574	58.323	58.679	0.74894					9	6	2	0	0	0	0.73016	1	21893	21893		8.7518	0	1	1672800	+		32851	28658	23892	24063	32004	32004					0.07541910911800187
LQYVQSLGLKE	11	Unmodified	_LQYVQSLGLKE_					0	0	0			REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1	REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	426.574844	1276.7027	-0.45567	-0.00019438	0.78401	0.00033444	0.32834	0.00014006	426.5751632222111	57.825	0.3562	58.574	58.323	58.679	0.74894	-0.079641	-6.7364E-05	NaN	8.7518	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1672800	+		32852	28658	23892	24063							0.07541910911800187
LRAAEELMR	9	Unmodified	_LRAAEELMR_					0	0	0			REV__ENSG00000169900|ENST00000302964|PYDC1	REV__ENSG00000169900|ENST00000302964|PYDC1	MULTI-MSMS	A375_MHC_IP_R1	1	363.9342956542969	3	363.534214	1087.58081	0.27317	9.9308E-05	-0.49914	-0.00018145	-0.22596	-8.2145E-05	363.53399737029696	45.966	0.45652	45.966	45.839	46.295	0					16	8	2	0	0	0	0.68382	1	16140	16140		8.4443	0	1	2589400	+		32853	20951	23893	24064	32005	32005					0.04052590348442209
LRAGKLSLLKS	11	Unmodified	_LRAGKLSLLKS_					0	0	0		KMT2A|p.P280L|1|0.22|ENSG00000118058|chr11:118471998-118471998|C/T|missense_variant	KMT2A|p.P280L|1|0.22|ENSG00000118058|chr11:118471998-118471998|C/T|missense_variant	KMT2A|p.P280L|1|0.22|ENSG00000118058|chr11:118471998-118471998|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	396.3271484375	3	395.92744	1184.76049	-0.39271	-0.00015549	-0.05598	-2.2164E-05	-0.44869	-0.00017765	395.9273902658534	18.855	0.20984	19.458	19.423	19.633	0.60308					8	5	2	0	0	0	0.73818	1	5759	5759		1.1098	0.65524	1	32599000			32854	14232	23894	24065	32006	32006					0.17550217627899656
LRALPLDPSL	10	Unmodified	_LRALPLDPSL_					0	0	0		nc|ENSG00000159588|Q96LX7-5|CCDC17;ENSG00000159588|ENST00000528266|CCDC17;nc|ENSG00000159588|Q96LX7-2|CCDC17	nc|ENSG00000159588|Q96LX7-5|CCDC17	nc|ENSG00000159588|Q96LX7-5|CCDC17	MSMS	A375_MHC_IP_R1	1	547.7313842773438	2	547.832049	1093.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.82	1	143.82	143.32	144.32	0								0	0	0	0.1552	1	55168	55168		3.9444	1.0552	1				32855	6377	23895	24066	32007	32007					0.10646577919806077
LRALRRPVL	9	Unmodified	_LRALRRPVL_					0	0	0		ENST00000223215.8_1_7:130132090-130132144:+|nuORF	ENST00000223215.8_1_7:130132090-130132144:+|nuORF	ENST00000223215.8_1_7:130132090-130132144:+|nuORF	MSMS	A375_MHC_IP_R2	2	365.3130798339844	3	365.248737	1092.72438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.249	1	19.852	19.352	20.352	0.60308								0	0	0	0.15486	1	5893	5893		2.4985	0.21571	1				32856	10116	23896	24067	32008	32008					0.18172805241692913
LRAMMSGQY	9	Unmodified	_LRAMMSGQY_					0	0	0		ENSG00000127220|ENST00000247706|ABHD8	ENSG00000127220|ENST00000247706|ABHD8	ENSG00000127220|ENST00000247706|ABHD8	MULTI-MSMS	A375_MHC_IP_R1	1	529.15283203125	2	528.751887	1055.48922	-0.56316	-0.00029777	-2.0712	-0.0010952	-2.6344	-0.0013929	528.7533134614971	95.991	0.86365	95.991	95.614	96.478	0					40	16	4	0	0	0	0.32899	1	35216	35216		28.487	1.2636	1	4145500			32857	4080	23897	24068	32009	32009					-0.036304163403656275
LRAVRFKAL	9	Unmodified	_LRAVRFKAL_					0	0	0			REV__ENSG00000198954|ENST00000361983|KIFBP	REV__ENSG00000198954|ENST00000361983|KIFBP	MULTI-MSMS	A375_MHC_IP_R2	2	358.6203308105469	3	358.569588	1072.68693	-0.46884	-0.00016811	-0.73512	-0.00026359	-1.204	-0.00043171	358.5692540806004	41.045	0.30499	41.819	41.641	41.946	0.77451					9	5	2	0	0	0	0.71902	1	15158	15158		5.2969	1.3525	1	2180500	+		32858	22457	23898	24069	32010	32010					0.1534971397609297
LRAVRQRSE	9	Unmodified	_LRAVRQRSE_					0	0	0		nc|ENSG00000162236|Q13190-3|STX5;nc|ENSG00000162236|Q13190-2|STX5;nc|ENSG00000162236|Q13190-4|STX5;ENSG00000162236|ENST00000294179|STX5	nc|ENSG00000162236|Q13190-3|STX5	nc|ENSG00000162236|Q13190-3|STX5	MULTI-SECPEP	A375_MHC_IP_R2	2	372.57684326171875	3	372.219506	1113.63669	0.12239	4.5556E-05	3.2013	0.0011916	3.3236	0.0012371	372.2208915182867	23.128	0.50941	23.758	23.47	23.979	0.63015					14	9	3	0	0	0	0.79966	1	7460	7460		3.5871	0	1	1886200			32859	6515	23899	24070	32011	32011					0.08441559580296598
LRCFWFQRF	9	Unmodified	_LRCFWFQRF_					0	0	0			REV__XCR1|p.L302F|1|0.32|ENSG00000173578|chr3:46021044-46021044|G/A|missense_variant	REV__XCR1|p.L302F|1|0.32|ENSG00000173578|chr3:46021044-46021044|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	434.9459228515625	3	434.890332	1301.64917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.196	1	19.799	19.299	20.299	0.60308								0	0	0	0.15486	1	5872	5872		11.495	3.0504	1		+		32860	29002	23900	24071	32012	32012					0.010408797189256802
LRDEDLFRLK	10	Unmodified	_LRDEDLFRLK_					0	0	0		ENSG00000151287|ENST00000376032|TEX30	ENSG00000151287|ENST00000376032|TEX30	ENSG00000151287|ENST00000376032|TEX30	MSMS	A375_MHC_IP_R2	2	652.9955444335938	2	652.869694	1303.72483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.849	1	92.584	92.084	93.084	0.7345								0	0	0	0.15541	1	34931	34931		3.2813	0	1				32861	5892	23901	24072	32013	32013					0.08512135380215113
LRDEFLVKI	9	Unmodified	_LRDEFLVKI_					0	0	0		ENSG00000173068|ENST00000380672|BNC2;ENST00000418777.5_1_9:16418989-16435690:-|nuORF	ENSG00000173068|ENST00000380672|BNC2	ENSG00000173068|ENST00000380672|BNC2	MULTI-SECPEP	A375_MHC_IP_R1	1	567.2395629882812	2	566.839874	1131.66519	-0.5721	-0.00032429	0.11024	6.2488E-05	-0.46187	-0.0002618	566.8398908606107	85.08	0.76421	85.08	84.8	85.565	0					37	14	4	0	0	0	0.38027	1	31159	31159		51.488	10.763	1	9507900			32862	7764	23902	24073	32014	32014					0.10462864436863129
LRDEFLVKI	9	Unmodified	_LRDEFLVKI_					0	0	0		ENSG00000173068|ENST00000380672|BNC2;ENST00000418777.5_1_9:16418989-16435690:-|nuORF	ENSG00000173068|ENST00000380672|BNC2	ENSG00000173068|ENST00000380672|BNC2	MULTI-MSMS	A375_MHC_IP_R2	2	567.239990234375	2	566.839874	1131.66519	-0.30991	-0.00017567	-0.23453	-0.00013294	-0.54444	-0.00030861	566.8396164436721	84.154	0.71654	84.894	84.559	85.276	0.73962					32	13	4	0	0	0	0.11176	1	31953	31953		51.488	3.756	1	11259000			32863	7764	23902	24073	32015	32015					0.10462864436863129
LRDKVTRIV	9	Unmodified	_LRDKVTRIV_					0	0	0		nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6;nc|ENSG00000158987|Q8TEU7-6|RAPGEF6;RAPGEF6|p.R1052Efs*2|1|0.16|ENSG00000158987|chr5:131453101-131453101|A/-|frameshift_variant;nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;ENST00000514179.5_1_5:130808426-130834192:-|nuORF	nc|ENSG00000158987|Q8TEU7-5|RAPGEF6	nc|ENSG00000158987|Q8TEU7-5|RAPGEF6	MULTI-SECPEP	A375_MHC_IP_R1	1	367.63641357421875	3	367.236385	1098.68733	0.30829	0.00011322	0.037291	1.3695E-05	0.34558	0.00012691	367.2363402533771	31.631	0.55804	31.631	31.363	31.921	0					24	10	3	0	0	0	0.54263	1	10156	10156		19.144	0	1	3838200			32864	6342	23903	24074	32016	32016					0.1419308890526736
LRDLTFRRV	9	Unmodified	_LRDLTFRRV_					0	0	0			REV__nc|ENSG00000092853|Q9HAW4-2|CLSPN	REV__nc|ENSG00000092853|Q9HAW4-2|CLSPN	MULTI-MSMS	A375_MHC_IP_R1	1	392.98651123046875	3	392.571768	1174.69348	-0.078539	-3.0832E-05	0.47036	0.00018465	0.39182	0.00015382	392.5719390594689	19.293	0.28278	19.293	19.238	19.521	0					8	5	2	0	0	0	0.66474	1	4701	4701		10.151	1.1743	1	20620000	+		32865	16977	23904	24075	32017	32017					0.11311607136781276
LRDPCKGKGRC	11	Unmodified	_LRDPCKGKGRC_					0	0	0		ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	MULTI-SECPEP	A375_MHC_IP_R2	2	411.62200927734375	3	411.54987	1231.62778	-0.18616	-7.6616E-05	2.8219	0.0011613	2.6357	0.0010847	411.5514264354515	50.155	0.2537	50.909	50.804	51.057	0.75406					7	4	2	0	0	0	0.95991	1	18825	18825		10.315	0	1	520410			32866	3608	23905	24076	32018	32018					0.021231266279528427
LRDTLGTLVF	10	Unmodified	_LRDTLGTLVF_					0	0	0			REV__OR5AC2|p.P23L|1|0.12|ENSG00000196578|chr3:98087240-98087240|C/T|missense_variant	REV__OR5AC2|p.P23L|1|0.12|ENSG00000196578|chr3:98087240-98087240|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	378.9404602050781	3	378.888763	1133.64446	0.74851	0.0002836	-0.50456	-0.00019117	0.24395	9.243E-05	378.88855021396455	38.857	0.45708	38.857	38.679	39.136	0					22	8	3	0	0	0	0.66857	1	13185	13185		15.739	0	1	8514400	+		32867	27686	23906	24077	32019	32019					0.0829827405721062
LRDVRARLGL	10	Unmodified	_LRDVRARLGL_					0	0	0		nc|ENSG00000147144|Q96HB5-2|CCDC120;nc|ENSG00000147144|Q96HB5|CCDC120;nc|ENSG00000147144|Q96HB5-5|CCDC120;nc|ENSG00000147144|Q96HB5-3|CCDC120;ENSG00000147144|ENST00000603986|CCDC120;ENST00000603906.1_1_X:48916566-48926191:+|nuORF	nc|ENSG00000147144|Q96HB5-2|CCDC120	nc|ENSG00000147144|Q96HB5-2|CCDC120	MSMS	A375_MHC_IP_R2	2	390.28033447265625	3	390.247285	1167.72002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.688	1	68.424	67.924	68.924	0.73631								0	0	0	0.15486	1	25648	25648		5.0475	0.3316	1				32868	5663	23907	24078	32020	32020					0.1428729602812382
LRDVVDFLK	9	Unmodified	_LRDVVDFLK_					0	0	0		ENSG00000111981|ENST00000229708|ULBP1	ENSG00000111981|ENST00000229708|ULBP1	ENSG00000111981|ENST00000229708|ULBP1	MULTI-MSMS	A375_MHC_IP_R1	1	369.2856750488281	3	368.885241	1103.63389	0.48068	0.00017732	0.6878	0.00025372	1.1685	0.00043104	368.8855901538848	43.223	0.96497	43.223	42.537	43.502	0					31	18	2	0	0	0	0.67152	1	15030	15030		9.544	3.3521	1	3475600			32869	3044	23908	24079	32021	32021					0.08622291402753035
LREEVVQRV	9	Unmodified	_LREEVVQRV_					0	0	0		nc|ENSG00000148482|Q504Y0-2|SLC39A12;nc|ENSG00000148482|Q504Y0-3|SLC39A12;nc|ENSG00000148482|Q504Y0-4|SLC39A12;ENSG00000148482|ENST00000377369|SLC39A12	nc|ENSG00000148482|Q504Y0-2|SLC39A12	nc|ENSG00000148482|Q504Y0-2|SLC39A12	MULTI-SECPEP	A375_MHC_IP_R1	1	376.6278991699219	3	376.555895	1126.64586	0.45078	0.00016974	-0.72595	-0.00027336	-0.27518	-0.00010362	376.55572482664843	20.493	0.30391	20.493	20.283	20.587	0					9	5	2	0	0	0	0.74412	1	5201	5201		6.6304	1.5829	1	904600			32870	5745	23909	24080	32022	32022					0.0875990814593024
LREGDVVRIY	10	Unmodified	_LREGDVVRIY_					0	0	0		nc|ENSG00000160293|P52735-3|VAV2;nc|ENSG00000160293|P52735-2|VAV2;ENSG00000160293|ENST00000371850|VAV2	nc|ENSG00000160293|P52735-3|VAV2	nc|ENSG00000160293|P52735-3|VAV2	MULTI-SECPEP	A375_MHC_IP_R1	1	610.7435913085938	2	610.343312	1218.67207	-0.32197	-0.00019651	-0.0046891	-2.8619E-06	-0.32666	-0.00019937	610.3432829867135	40.316	0.35765	40.316	40.1	40.458	0					11	6	2	0	0	0	0.91442	1	13869	13869		11.495	4.8643	1	2012300			32871	6413	23910	24081	32023	32023					0.07148177317435511
LREGDVVRIY	10	Unmodified	_LREGDVVRIY_					0	0	0		nc|ENSG00000160293|P52735-3|VAV2;nc|ENSG00000160293|P52735-2|VAV2;ENSG00000160293|ENST00000371850|VAV2	nc|ENSG00000160293|P52735-3|VAV2	nc|ENSG00000160293|P52735-3|VAV2	MULTI-MATCH	A375_MHC_IP_R2	2		2	610.343312	1218.67207	-0.53588	-0.00032707	-0.00092969	-5.6743E-07	-0.53681	-0.00032764	610.3431675168133	39.419	0.2529	40.194	40.067	40.32	0.77451	-0.061276	2.9004E-06	NaN	11.495	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2750200			32872	6413	23910	24081							0.07148177317435511
LREGVQAA	8	Unmodified	_LREGVQAA_					0	0	0		chr2:96972322-96972538|268|50.09|0.09|9.1|-|2|FAM178B,FAM178B|1;ENSG00000168754|ENST00000490605|FAM178B	chr2:96972322-96972538|268|50.09|0.09|9.1|-|2|FAM178B,FAM178B|1	chr2:96972322-96972538|268|50.09|0.09|9.1|-|2|FAM178B,FAM178B|1	MSMS	A375_MHC_IP_R2	2	422.26837158203125	2	422.237784	842.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.273	1	46.039	45.539	46.539	0.76519								0	0	0	0.16876	1	16918	16918		23.148	2.6948	1				32873	467	23911	24082	32024	32024					0.03348345066183356
LREIIVLKTS	10	Unmodified	_LREIIVLKTS_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	A375_MHC_IP_R1	1	586.7742919921875	2	586.374081	1170.73361	-0.62246	-0.00036499	0.43798	0.00025682	-0.18448	-0.00010817	586.3742476919805	147.17	0.13702	147.17	147.1	147.23	0					38	16	3	0	0	0	0.72416	1	56256	56256		1.4819	0	1	185460	+		32874	20249	23912	24083	32025	32025					0.15507109016721188
LREIIVLKTS	10	Unmodified	_LREIIVLKTS_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	586.374081	1170.73361	-0.62246	-0.00036499	0.43798	0.00025682	-0.18448	-0.00010817	586.3742476919805	147.17	0.13702	147.17	147.1	147.23	0	-0.018308	0.00019907	NaN	1.4819	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185460	+		32875	20249	23912	24083							0.15507109016721188
LREIIVLKTS	10	Unmodified	_LREIIVLKTS_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MULTI-MATCH	A375_MHC_IP_R2	2		2	586.374081	1170.73361	-0.3477	-0.00020388	-0.018777	-1.101E-05	-0.36647	-0.00021489	586.3740005471781	147.18	0.12587	147.2	147.14	147.26	0.019913	0.018308	-0.00033659	NaN	1.4819	33	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148520	+		32876	20249	23912	24083							0.15507109016721188
LREKWLLQG	9	Unmodified	_LREKWLLQG_					0	0	0		nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-8|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	571.2293701171875	2	571.837665	1141.66078	-0.16823	-9.6199E-05	-0.51611	-0.00029513	-0.68433	-0.00039133	571.8371580787951	72.664	0.60851	72.664	72.423	73.031	0					18	11	2	0	0	0	0.63327	1	26447	26447		18.146	8.0724	1	2334800			32877	14698	23913	24084	32026	32026					0.09561400013922139
LRELPNFQL	9	Unmodified	_LRELPNFQL_					0	0	0			REV__nc|ENSG00000136643|Q96S38-2|RPS6KC1	REV__nc|ENSG00000136643|Q96S38-2|RPS6KC1	MULTI-SECPEP	A375_MHC_IP_R1	1	377.9343566894531	3	377.216991	1128.62914	0.26114	9.8508E-05	0.15504	5.8482E-05	0.41618	0.00015699	377.21701747098837	38.513	0.46121	38.513	38.319	38.78	0					13	8	3	0	0	0	0.71341	1	13141	13141		8.9762	3.5735	1	3146200	+		32878	18951	23914	24085	32027	32027					0.0699740725999618
LREMWDWAY	9	Unmodified	_LREMWDWAY_					0	0	0			REV__ENST00000326956.11_1_1:54691347-54691953:-|nuORF	REV__ENST00000326956.11_1_1:54691347-54691953:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	424.26226806640625	3	423.862219	1268.56483	-0.37066	-0.00015711	0.49885	0.00021144	0.1282	5.4337E-05	423.8623550232482	34.575	1.7233	35.336	34.913	36.636	0.76097					48	33	2	0	0	0	0.72507	1	12342	12342		2.7352	0.82882	1	2832400	+		32879	23606	23915	24086	32028	32028					-0.05871115888476197
LRENDQRSVD	10	Unmodified	_LRENDQRSVD_					0	0	0		ENSG00000165972|ENST00000344280|CCDC38;CCDC38|p.R299Pfs*24|1|0.36|ENSG00000165972|chr12:95888482-95888482|C/-|frameshift_variant	ENSG00000165972|ENST00000344280|CCDC38	ENSG00000165972|ENST00000344280|CCDC38	MULTI-MSMS	A375_MHC_IP_R1	1	411.6053466796875	3	411.205702	1230.59528	0.13411	5.5149E-05	-0.73783	-0.0003034	-0.60372	-0.00024825	411.2055104106794	50.891	2.4394	50.891	49.947	52.387	0					140	47	5	0	0	0	0.69833	2	18144	17966;18144		7.9454	2.162	1	99992000			32880	7011	23916	24087	32029;32030	32030					-0.010796659697007271
LRENDQRSVD	10	Unmodified	_LRENDQRSVD_					0	0	0		ENSG00000165972|ENST00000344280|CCDC38;CCDC38|p.R299Pfs*24|1|0.36|ENSG00000165972|chr12:95888482-95888482|C/-|frameshift_variant	ENSG00000165972|ENST00000344280|CCDC38	ENSG00000165972|ENST00000344280|CCDC38	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	411.205702	1230.59528	-0.2126	-8.7423E-05	-0.82876	-0.00034079	-1.0414	-0.00042821	411.2054603956467	49.922	2.9913	50.676	49.585	52.576	0.75406	-0.10764	-3.7796E-05	NaN	7.9454	158	58	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93740000			32881	7011	23916	24087							-0.010796659697007271
LRENQDYVP	9	Unmodified	_LRENQDYVP_					0	0	0		ENST00000485535.5_1_3:48445895-48454598:-|nuORF;nc|ENSG00000164050|O43157-2|PLXNB1;ENSG00000164050|ENST00000296440|PLXNB1	ENST00000485535.5_1_3:48445895-48454598:-|nuORF	ENST00000485535.5_1_3:48445895-48454598:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	378.2646484375	3	378.524372	1132.55129	0.25322	9.5851E-05	0.10932	4.1379E-05	0.36254	0.00013723	378.5243513925168	52.593	0.40873	52.593	52.387	52.796	0					17	7	3	0	0	0	0.74651	1	18740	18740		8.7454	2.962	1	2416300			32882	6763	23917	24088	32031	32031					-0.009686503960438131
LREQIEDYTL	10	Unmodified	_LREQIEDYTL_					0	0	0			REV__CBLC|p.V247I|1|0.15|ENSG00000142273|chr19:44782451-44782451|G/A|missense_variant	REV__CBLC|p.V247I|1|0.15|ENSG00000142273|chr19:44782451-44782451|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	427.6001892089844	3	427.22247	1278.64558	-0.19636	-8.389E-05	0.12002	5.1275E-05	-0.07634	-3.2614E-05	427.2225673900774	47.217	0.31092	47.217	47.055	47.366	0					9	5	2	0	0	0	0.69306	1	16557	16557		8.4443	1.8209	1	1132900	+		32883	15587	23918	24089	32032	32032					0.01740443635412703
LREQIEDYTL	10	Unmodified	_LREQIEDYTL_					0	0	0			REV__CBLC|p.V247I|1|0.15|ENSG00000142273|chr19:44782451-44782451|G/A|missense_variant	REV__CBLC|p.V247I|1|0.15|ENSG00000142273|chr19:44782451-44782451|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	427.22247	1278.64558	-0.19636	-8.389E-05	0.12002	5.1275E-05	-0.07634	-3.2614E-05	427.2225673900774	47.217	0.31092	47.217	47.055	47.366	0	-0.032254	-8.4349E-05	NaN	8.4443	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1132900	+		32884	15587	23918	24089							0.01740443635412703
LREWRCFQWWR	11	Unmodified	_LREWRCFQWWR_					0	0	0		ENST00000430334.7_1_17:43555485-43568071:-|nuORF;ENST00000582986.5_1_17:62801160-62833227:-|nuORF	ENST00000430334.7_1_17:43555485-43568071:-|nuORF	ENST00000430334.7_1_17:43555485-43568071:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	834.3157348632812	2	833.414611	1664.81467	-0.51161	-0.00042638	1.1783	0.00098205	0.66673	0.00055567	833.4153144055515	80.476	0.65845	80.476	80.187	80.846	0					26	12	3	0	0	0	0.73902	1	29432	29432		0.30703	0.03801	1	2937200			32885	11855	23919	24090	32033	32033					0.008854865077864815
LREWRCFQWWR	11	Unmodified	_LREWRCFQWWR_					0	0	0		ENST00000430334.7_1_17:43555485-43568071:-|nuORF;ENST00000582986.5_1_17:62801160-62833227:-|nuORF	ENST00000430334.7_1_17:43555485-43568071:-|nuORF	ENST00000430334.7_1_17:43555485-43568071:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	833.6368408203125	2	833.414611	1664.81467	-0.7047	-0.00058731	0.4832	0.00040271	-0.2215	-0.0001846	833.414889933477	79.846	0.76208	80.59	80.249	81.011	0.74473					18	14	2	0	0	0	0.73902	1	30396	30396		0.30703	0	1	2331600			32886	11855	23919	24090	32034	32034					0.008854865077864815
LREWRCFQWWR	11	Unmodified	_LREWRCFQWWR_					0	0	0		ENST00000430334.7_1_17:43555485-43568071:-|nuORF;ENST00000582986.5_1_17:62801160-62833227:-|nuORF	ENST00000430334.7_1_17:43555485-43568071:-|nuORF	ENST00000430334.7_1_17:43555485-43568071:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	833.414611	1664.81467	-0.7047	-0.00058731	0.4832	0.00040271	-0.2215	-0.0001846	833.414889933477	79.846	0.76208	80.59	80.249	81.011	0.74473	0.057263	-0.00090579	NaN	0.30703	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2331600			32887	11855	23919	24090							0.008854865077864815
LRFELRYR	8	Unmodified	_LRFELRYR_					0	0	0		ENST00000507256.1_1_1:154407503-154427053:+|nuORF;nc|ENSG00000160712|P08887-2|IL6R;ENSG00000160712|ENST00000368485|IL6R	ENST00000507256.1_1_1:154407503-154427053:+|nuORF	ENST00000507256.1_1_1:154407503-154427053:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	384.9400939941406	3	384.89273	1151.65636	-0.021664	-8.3382E-06	-0.11437	-4.402E-05	-0.13603	-5.2359E-05	384.89265835559814	23.605	0.91516	23.605	23.33	24.245	0					33	17	3	0	0	0	0.7777	1	6574	6574		3.2813	0	1	17112000			32888	6436	23920	24091	32035	32035					0.08659935591003887
LRFGNPLLV	9	Unmodified	_LRFGNPLLV_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	A375_MHC_IP_R1	1	515.2159423828125	2	514.816202	1027.61785	-0.49011	-0.00025231	0.38366	0.00019751	-0.10645	-5.4803E-05	514.8162129918161	100.59	0.81134	100.59	100.28	101.09	0					34	15	3	0	0	0	0.43707	1	36959	36959		36.044	5.8194	1	4941000			32889	9114	23921	24092	32036	32036					0.10514629956514909
LRFGNPLLV	9	Unmodified	_LRFGNPLLV_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MATCH	A375_MHC_IP_R2	2		2	514.816202	1027.61785	-0.52028	-0.00026785	-0.48812	-0.00025129	-1.0084	-0.00051914	514.815976997367	99.619	0.60943	100.38	100.02	100.63	0.76278	-0.10343	-0.00020122	NaN	36.044	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4423300			32890	9114	23921	24092							0.10514629956514909
LRFHTWLGLRM	11	Unmodified	_LRFHTWLGLRM_					0	0	0		nc|nan|Q8N0U7-2|C1orf87	nc|nan|Q8N0U7-2|C1orf87	nc|nan|Q8N0U7-2|C1orf87	MULTI-SECPEP	A375_MHC_IP_R2	2	477.1293640136719	3	477.267691	1428.78124	-0.58968	-0.00028144	0.66914	0.00031936	0.079458	3.7923E-05	477.6024481271266	40.067	0.25341	40.842	40.727	40.98	0.77451					6	4	2	0	0	0	0.99971	1	14799	14799		3.8459	0.52627	1	1612000			32891	14978	23922	24093	32037	32037					0.0840048473587558
LRFPGQLNA	9	Unmodified	_LRFPGQLNA_					0	0	0		ENSG00000101162|ENST00000217133|TUBB1;CON__ENSEMBL:ENSBTAP00000025008;ENSG00000173213|ENST00000308911|TUBB8B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000196230|ENST00000327892|TUBB;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3;chr16:89921431-89932571|440|11.67|0.7|4.06|+|ENST00000555810|TUBB3,TUBB3;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6	ENSG00000101162|ENST00000217133|TUBB1;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;nc|ENSG00000258947|Q13509-2|TUBB3;ENST00000417736.2_1_18:12308439-12326126:+|nuORF	nc|ENSG00000258947|Q13509-2|TUBB3	MULTI-SECPEP	A375_MHC_IP_R1	1	508.687744140625	2	508.287808	1014.56106	-0.48155	-0.00024477	0.085449	4.3433E-05	-0.3961	-0.00020134	508.2878250526124	64.936	1.1202	64.936	64.393	65.514	0					46	21	3	0	0	0	0.24548	1	23468	23468		36.127	36.127	1	5985500		+	32892	9924;4872;9016;7993;2260	23923	24094	32038	32038					0.054365823999773966
LRFPGQLNA	9	Unmodified	_LRFPGQLNA_					0	0	0		ENSG00000101162|ENST00000217133|TUBB1;CON__ENSEMBL:ENSBTAP00000025008;ENSG00000173213|ENST00000308911|TUBB8B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000196230|ENST00000327892|TUBB;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3;chr16:89921431-89932571|440|11.67|0.7|4.06|+|ENST00000555810|TUBB3,TUBB3;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6	ENSG00000101162|ENST00000217133|TUBB1;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;nc|ENSG00000258947|Q13509-2|TUBB3;ENST00000417736.2_1_18:12308439-12326126:+|nuORF	nc|ENSG00000258947|Q13509-2|TUBB3	MULTI-MSMS	A375_MHC_IP_R2	2	508.71148681640625	2	508.287808	1014.56106	-0.66751	-0.00033929	1.2184	0.00061929	0.55088	0.00028001	508.28791859585414	64.07	0.55819	64.81	64.496	65.054	0.74022					22	10	3	0	0	0	0.091096	2	24287	24253;24287		52.268	14.093	1	5281800		+	32893	9924;4872;9016;7993;2260	23923	24094	32039;32040	32040					0.054365823999773966
LRFPRPVRV	9	Unmodified	_LRFPRPVRV_					0	0	0		ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-4|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;nc|ENSG00000124006|O75147-1|OBSL1	ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-1|OBSL1	ENSG00000124006|ENST00000404537|OBSL1	MULTI-MSMS	A375_MHC_IP_R1	1	380.9772644042969	3	380.576854	1138.70873	0.61229	0.00023302	-0.19968	-7.5993E-05	0.41261	0.00015703	380.5767275273289	44.382	0.66695	44.382	44.01	44.676	0					30	12	4	0	0	0	0.13797	1	15460	15460		33.445	26.343	1	5370500			32894	3867;14575	23924	24095	32041	32041					0.14492518724614456
LRFPRPVRV	9	Unmodified	_LRFPRPVRV_					0	0	0		ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-4|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;nc|ENSG00000124006|O75147-1|OBSL1	ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-1|OBSL1	ENSG00000124006|ENST00000404537|OBSL1	MULTI-MSMS	A375_MHC_IP_R2	2	380.97662353515625	3	380.576854	1138.70873	0.13907	5.2927E-05	-0.040715	-1.5495E-05	0.098355	3.7432E-05	380.57677296557046	43.332	0.55748	44.105	43.775	44.333	0.7724					21	10	3	0	0	0	0.10411	1	16131	16131		38.615	38.615	1	5866300			32895	3867;14575	23924	24095	32042	32042					0.14492518724614456
LRFTLTAQI	9	Unmodified	_LRFTLTAQI_					0	0	0			REV__ENSG00000255582|ENST00000542433|OR10G2	REV__ENSG00000255582|ENST00000542433|OR10G2	MULTI-MSMS	A375_MHC_IP_R2	2	355.2816162109375	3	354.88172	1061.62333	-0.13625	-4.8352E-05	-0.12233	-4.3412E-05	-0.25858	-9.1764E-05	354.88163763248957	69.715	0.71172	70.45	69.981	70.693	0.73421					22	13	3	0	0	0	0.69674	1	26461	26461		4.5289	0.58447	1	2216000	+		32896	22877	23925	24096	32043	32043					0.09498308748311501
LRFVVPCRF	9	Unmodified	_LRFVVPCRF_					0	0	0			REV__ITGAL|p.Q1027L|1|0.36|ENSG00000005844|chr16:30517843-30517843|A/T|missense_variant	REV__ITGAL|p.Q1027L|1|0.36|ENSG00000005844|chr16:30517843-30517843|A/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	379.6169128417969	3	379.551428	1135.63245	-0.12449	-4.7252E-05	0.20506	7.7831E-05	0.080565	3.0579E-05	379.5514480442306	50.278	0.40523	51.032	50.753	51.159	0.75406					10	7	2	0	0	0	0.69317	1	18936	18936		7.609	7.609	1	1668000	+		32897	26805	23926	24097	32044	32044					0.07006378832988958
LRGDCGKTRV	10	Unmodified	_LRGDCGKTRV_					0	0	0			REV__ENST00000526972.5_1_11:65601488-65617723:+|nuORF	REV__ENST00000526972.5_1_11:65601488-65617723:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	368.2720642089844	3	368.869597	1103.58696	0.29629	0.00010929	-0.76282	-0.00028138	-0.46653	-0.00017209	368.86923224163536	31.833	0.51056	31.833	31.565	32.075	0					13	9	2	0	0	0	0.88361	1	10155	10155		15.739	0	1	2909700	+		32898	25781	23927	24098	32045	32045					0.03931108579968168
LRGERTWPSP	10	Unmodified	_LRGERTWPSP_					0	0	0		ENST00000295092.2_1_2:14775220-14775334:+|nuORF;nc|ENSG00000162981|Q96KN4-2|LRATD1	ENST00000295092.2_1_2:14775220-14775334:+|nuORF	ENST00000295092.2_1_2:14775220-14775334:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	400.2900695800781	3	400.215761	1197.62546	-0.38256	-0.00015311	-0.87777	-0.0003513	-1.2603	-0.0005044	400.21549760010475	52.731	0.45976	52.731	52.387	52.847	0					10	8	2	0	0	0	0.88361	1	18668	18668		11.518	0	1	659670			32899	10493	23928	24099	32046	32046					0.03454737486117665
LRGGSHGK	8	Unmodified	_LRGGSHGK_					0	0	0		ENST00000287218.8_1_6:38121862-38122195:+|nuORF	ENST00000287218.8_1_6:38121862-38122195:+|nuORF	ENST00000287218.8_1_6:38121862-38122195:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	406.63018798828125	2	406.230294	810.446034	-0.27815	-0.00011299	0.44398	0.00018036	0.16584	6.7368E-05	406.2303932032573	100.88	2.2796	100.88	99.925	102.2	0					96	44	3	0	0	0	0.7781	1	37038	37038		1.8442	0	1	4818500			32900	10455	23929	24100	32047	32047					0.03322897988846307
LRGIKLIEP	9	Unmodified	_LRGIKLIEP_					0	0	0			REV__tr|U7SGA3|U7SGA3_FUSNUPNPLAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02235PE=4SV=1	REV__tr|U7SGA3|U7SGA3_FUSNUPNPLAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02235PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1591186523438	2	519.837134	1037.65972	-0.58208	-0.00030259	0.035745	1.8582E-05	-0.54634	-0.00028401	519.837125336575	69.728	0.86517	70.462	70.132	70.997	0.73421					47	16	4	0	0	0	0.28216	1	26443	26443		41.84	9.0539	1	69842000	+		32901	28179	23930	24101	32048	32048					0.1423918564505584
LRGKDIGMIF	10	Unmodified	_LRGKDIGMIF_					0	0	0		tr|U7SV32|U7SV32_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01496PE=3SV=1	tr|U7SV32|U7SV32_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01496PE=3SV=1	tr|U7SV32|U7SV32_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01496PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	384.60833740234375	3	383.886476	1148.6376	-0.19414	-7.4528E-05	-0.46414	-0.00017818	-0.65828	-0.0002527	383.8862658210347	31.684	3.8565	32.421	30.019	33.876	0.73691					156	75	3	0	0	0	0.50967	1	11239	11239		18.721	2.9826	1	13502000			32902	29788	23931	24102	32049	32049					0.06922637904949624
LRGPKEGPTL	10	Unmodified	_LRGPKEGPTL_					0	0	0			REV__ABCA7|p.E90K|1|0.4|ENSG00000064687|chr19:1041938-1041938|G/A|missense_variant	REV__ABCA7|p.E90K|1|0.4|ENSG00000064687|chr19:1041938-1041938|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	534.6587524414062	2	534.314023	1066.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.63	1	134.63	134.13	135.13	0								0	0	0	0.1552	1	51916	51916		3.9444	0	1		+		32903	15282	23932	24103	32050	32050					0.08285120742948493
LRGPPSSR	8	Unmodified	_LRGPPSSR_					0	0	0			REV__nc|ENSG00000179148|Q9BYJ1-2|ALOXE3	REV__nc|ENSG00000179148|Q9BYJ1-2|ALOXE3	MULTI-MSMS	A375_MHC_IP_R1	1	435.2824401855469	2	435.251226	868.487899	-0.041176	-1.7922E-05	0.2438	0.00010612	0.20263	8.8194E-05	435.2512280958006	104.22	6.8161	104.22	102.61	109.42	0					311	133	3	0	0	0	0.77741	1	39369	39369		4.3292	0	1	16984000	+		32904	27382	23933	24104	32051	32051					0.04839453677379879
LRGRRQRRKH	10	Unmodified	_LRGRRQRRKH_					0	0	0			REV__KMT2D|p.P2390Rfs*36|1|0.37|ENSG00000167548|chr12:49040601-49040601|G/-|frameshift_variant	REV__KMT2D|p.P2390Rfs*36|1|0.37|ENSG00000167548|chr12:49040601-49040601|G/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	681.9242553710938	2	681.924326	1361.8341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.35	1	122.73	122.23	123.23	0.3766								0	0	0	0.15591	1	46878	46878		1.6526	0.17072	1		+		32905	26866	23934	24105	32052	32052					0.1676562363359153
LRGVDYFKQRR	11	Unmodified	_LRGVDYFKQRR_					0	0	0		WRNIP1|p.F659Y|1|0.36|ENSG00000124535|chr6:2785260-2785260|T/A|missense_variant	WRNIP1|p.F659Y|1|0.36|ENSG00000124535|chr6:2785260-2785260|T/A|missense_variant	WRNIP1|p.F659Y|1|0.36|ENSG00000124535|chr6:2785260-2785260|T/A|missense_variant	MSMS	A375_MHC_IP_R1	1	719.3125	2	719.407309	1436.80007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.75	1	131.75	131.25	132.25	0								0	0	0	0.16265	1	50795	50795		4.897	0.70751	1				32906	30166	23935	24106	32053	32053					0.09913737631291042
LRGVVRSL	8	Unmodified	_LRGVVRSL_					0	0	0			REV__PDZD8|p.C347Lfs*4|1|0.36|ENSG00000165650|chr10:117318930-117318931|-/A|frameshift_variant	REV__PDZD8|p.C347Lfs*4|1|0.36|ENSG00000165650|chr10:117318930-117318931|-/A|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	450.6927490234375	2	450.292894	898.571235	0.20125	9.0623E-05	-0.039506	-1.7789E-05	0.16175	7.2834E-05	450.29276650026924	39.008	0.61088	39.008	38.78	39.391	0					23	11	3	0	0	0	0.76248	1	13293	13293		16.942	0.79319	1	6909200	+		32907	20605	23936	24107	32054	32054					0.11789190125227833
LRGVVRSL	8	Unmodified	_LRGVVRSL_					0	0	0			REV__PDZD8|p.C347Lfs*4|1|0.36|ENSG00000165650|chr10:117318930-117318931|-/A|frameshift_variant	REV__PDZD8|p.C347Lfs*4|1|0.36|ENSG00000165650|chr10:117318930-117318931|-/A|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	450.292894	898.571235	0.20125	9.0623E-05	-0.039506	-1.7789E-05	0.16175	7.2834E-05	450.29276650026924	39.008	0.61088	39.008	38.78	39.391	0	0.19862	-5.1671E-05	NaN	16.942	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6909200	+		32908	20605	23936	24107							0.11789190125227833
LRGWRRRRQN	10	Unmodified	_LRGWRRRRQN_					0	0	0		PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant;PRKAR1A|p.A48Dfs*82|1|0.42|ENSG00000108946|chr17:68515541-68515542|-/AT|frameshift_variant	PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant	PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	699.8079223632812	2	699.408509	1396.80247	-0.64149	-0.00044866	0.24369	0.00017044	-0.3978	-0.00027823	699.4085693712417	132.85	5.3043	133.02	132.59	137.89	0.16487					303	103	5	0	0	0	0.72416	1	53337	53337		1.4819	0.28856	1	654640000			32909	15226	23937	24108	32055	32055					0.11993630879646844
LRGWRRRRQN	10	Unmodified	_LRGWRRRRQN_					0	0	0		PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant;PRKAR1A|p.A48Dfs*82|1|0.42|ENSG00000108946|chr17:68515541-68515542|-/AT|frameshift_variant	PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant	PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	699.408509	1396.80247	-0.86527	-0.00060518	0.46346	0.00032414	-0.40182	-0.00028103	699.4087162786221	132.94	5.7679	132.94	132.54	138.31	0	-0.041261	0.00017983	NaN	1.4819	321	112	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	631940000			32910	15226	23937	24108							0.11993630879646844
LRHEDEQAL	9	Unmodified	_LRHEDEQAL_					0	0	0		MYCBP2|p.V4031Lfs*3|1|0.12|ENSG00000005810|chr13:77067831-77067832|-/AACAG|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.V4031Lfs*3|1|0.12|ENSG00000005810|chr13:77067831-77067832|-/AACAG|frameshift_variant	MYCBP2|p.V4031Lfs*3|1|0.12|ENSG00000005810|chr13:77067831-77067832|-/AACAG|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	555.0601196289062	2	555.780544	1109.54654	-0.5834	-0.00032424	0.043596	2.423E-05	-0.5398	-0.00030001	555.7804041933516	137.41	0.35712	137.5	137.35	137.71	0.083969					8	6	2	0	0	0	0.8028	1	53897	53897		1.8442	0	1	849840			32911	899	23938	24109	32056	32056					-0.003855345388274145
LRHFRRGRRR	10	Unmodified	_LRHFRRGRRR_					0	0	0		ENSG00000172869|ENST00000539542|DMXL1;nc|ENSG00000172869|Q9Y485|DMXL1	ENSG00000172869|ENST00000539542|DMXL1	ENSG00000172869|ENST00000539542|DMXL1	MULTI-MSMS	A375_MHC_IP_R1	1	705.8314819335938	2	705.432319	1408.85008	-0.9555	-0.00067404	0.16984	0.00011981	-0.78566	-0.00055423	705.4322932044691	143.07	0.60535	143.07	142.64	143.24	0					36	11	4	0	0	0	0.72658	1	54821	54821		0.40072	0.40072	1	5164600			32912	7739	23939	24110	32057	32057					0.1620132987047782
LRHFRRGRRR	10	Unmodified	_LRHFRRGRRR_					0	0	0		ENSG00000172869|ENST00000539542|DMXL1;nc|ENSG00000172869|Q9Y485|DMXL1	ENSG00000172869|ENST00000539542|DMXL1	ENSG00000172869|ENST00000539542|DMXL1	MULTI-MSMS	A375_MHC_IP_R2	2	705.8311157226562	2	705.432319	1408.85008	-0.53455	-0.00037709	-0.29541	-0.00020839	-0.82996	-0.00058548	705.4318929472339	143.07	0.75966	143.1	142.64	143.39	0.030746					43	14	4	0	0	0	0.72658	1	55852	55852		0.40072	0.050084	1	5491600			32913	7739	23939	24110	32058	32058					0.1620132987047782
LRHFRRGRRR	10	Unmodified	_LRHFRRGRRR_					0	0	0		ENSG00000172869|ENST00000539542|DMXL1;nc|ENSG00000172869|Q9Y485|DMXL1	ENSG00000172869|ENST00000539542|DMXL1	ENSG00000172869|ENST00000539542|DMXL1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	705.432319	1408.85008	-0.9555	-0.00067404	0.16984	0.00011981	-0.78566	-0.00055423	705.4322932044691	143.07	0.60535	143.07	142.64	143.24	0	-0.017154	0.00028681	NaN	0.40072	36	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5164600			32914	7739	23939	24110							0.1620132987047782
LRHFRRGRRR	10	Unmodified	_LRHFRRGRRR_					0	0	0		ENSG00000172869|ENST00000539542|DMXL1;nc|ENSG00000172869|Q9Y485|DMXL1	ENSG00000172869|ENST00000539542|DMXL1	ENSG00000172869|ENST00000539542|DMXL1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	705.432319	1408.85008	-0.53455	-0.00037709	-0.29541	-0.00020839	-0.82996	-0.00058548	705.4318929472339	143.07	0.75966	143.1	142.64	143.39	0.030746	0.017154	-0.00036959	NaN	0.40072	43	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5491600			32915	7739	23939	24110							0.1620132987047782
LRHLLRVLRRL	11	Unmodified	_LRHLLRVLRRL_					0	0	0		ENST00000590513.2_1_17:40706270-40706666:-|nuORF	ENST00000590513.2_1_17:40706270-40706666:-|nuORF	ENST00000590513.2_1_17:40706270-40706666:-|nuORF	MSMS	A375_MHC_IP_R1	1	723.0231323242188	2	722.988604	1443.96265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.27	1	100.27	99.774	100.77	0								0	0	0	0.1636	1	36855	36855		0	0	1				32916	13785	23940	24111	32059	32059					0.25843165823948766
LRHPAIRVL	9	Unmodified	_LRHPAIRVL_					0	0	0		ENST00000493657.1_1_1:1244633-1244984:+|nuORF;ENST00000470520.5_1_1:1244480-1246298:+|nuORF;ENSG00000169972|ENST00000379031|PUSL1	ENST00000493657.1_1_1:1244633-1244984:+|nuORF	ENST00000493657.1_1_1:1244633-1244984:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	359.30096435546875	3	358.901337	1073.68218	-0.6964	-0.00024994	0.37554	0.00013478	-0.32086	-0.00011516	358.9014329397962	36.7	0.55919	37.471	37.207	37.767	0.7709					14	10	2	0	0	0	0.6343	1	13433	13433		12.873	2.722	1	2173200			32917	7459	23941	24112	32060	32060					0.14828829833322743
LRHRHSRNRRH	11	Unmodified	_LRHRHSRNRRH_					0	0	0			REV__LCE1A|p.H75N|1|0.54|ENSG00000186844|chr1:152827695-152827695|C/A|missense_variant	REV__LCE1A|p.H75N|1|0.54|ENSG00000186844|chr1:152827695-152827695|C/A|missense_variant	MSMS	A375_MHC_IP_R1	1	508.6748046875	3	508.957902	1523.85188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.616	1	90.616	90.116	91.116	0								0	0	0	0.16338	1	33303	33303		1.1098	0.096179	1		+		32918	26918	23942	24113	32061	32061					0.11090338888425322
LRHSSLYLL	9	Unmodified	_LRHSSLYLL_					0	0	0			REV__CFAP43|p.G650R|1|0.49|ENSG00000197748|chr10:104186036-104186036|C/T|missense_variant	REV__CFAP43|p.G650R|1|0.49|ENSG00000197748|chr10:104186036-104186036|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	367.9452819824219	3	367.885353	1100.63423	-0.19251	-7.0823E-05	-0.059066	-2.173E-05	-0.25158	-9.2552E-05	367.8854174128146	38.476	0.45715	39.25	39.047	39.504	0.77451					15	8	2	0	0	0	0.76106	1	14095	14095		9.544	0	1	3278700	+		32919	15644	23943	24114	32062	32062					0.08793711122598324
LRIGEVGKKF	10	Unmodified	_LRIGEVGKKF_					0	0	0		nc|ENSG00000197226|Q66K14|TBC1D9B;ENSG00000197226|ENST00000355235|TBC1D9B;ENST00000520794.1_1_5:179290450-179293075:-|nuORF	nc|ENSG00000197226|Q66K14|TBC1D9B	nc|ENSG00000197226|Q66K14|TBC1D9B	MULTI-MSMS	A375_MHC_IP_R2	2	382.92657470703125	3	382.904636	1145.69208	-0.22757	-8.7138E-05	0.14573	5.5801E-05	-0.081838	-3.1336E-05	382.90465789181735	28.046	0.4064	28.725	28.502	28.909	0.67857					20	7	4	0	0	0	0.7086	1	9715	9715		8.4443	0.83535	1	25453000			32920	9133	23944	24115	32063	32063					0.1250597304801886
LRILKEPHG	9	Unmodified	_LRILKEPHG_					0	0	0			REV__ENSG00000203697|ENST00000366872|CAPN8	REV__ENSG00000203697|ENST00000366872|CAPN8	MULTI-MSMS	A375_MHC_IP_R1	1	354.9222106933594	3	354.885464	1061.63456	-0.045884	-1.6284E-05	-0.34123	-0.0001211	-0.38711	-0.00013738	354.8852973539734	47.285	1.0179	47.285	46.952	47.97	0					28	19	3	0	0	0	0.75274	1	16576	16576		2.2828	0	1	5240900	+		32921	22465	23945	24116	32064	32064					0.10621130842446291
LRINSIPFY	9	Unmodified	_LRINSIPFY_					0	0	0			REV__ENSG00000188910|ENST00000373366|GJB3	REV__ENSG00000188910|ENST00000373366|GJB3	MULTI-MSMS	A375_MHC_IP_R1	1	375.27667236328125	3	374.88172	1121.62333	0.33573	0.00012586	0.51715	0.00019387	0.85288	0.00031973	374.88172244800245	33.419	0.30635	33.419	33.291	33.597	0					8	5	2	0	0	0	0.64971	1	10867	10867		11.495	0.6952	1	1451300	+		32922	22124	23946	24117	32065	32065					0.06738308748322197
LRINSIPFY	9	Unmodified	_LRINSIPFY_					0	0	0			REV__ENSG00000188910|ENST00000373366|GJB3	REV__ENSG00000188910|ENST00000373366|GJB3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	374.88172	1121.62333	0.33573	0.00012586	0.51715	0.00019387	0.85288	0.00031973	374.88172244800245	33.419	0.30635	33.419	33.291	33.597	0	0.077	3.3526E-06	NaN	11.495	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1451300	+		32923	22124	23946	24117							0.06738308748322197
LRKAGQVFL	9	Unmodified	_LRKAGQVFL_					0	0	0		nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP	nc|ENSG00000173786|P09543-2|CNP	nc|ENSG00000173786|P09543-2|CNP	MULTI-SECPEP	A375_MHC_IP_R2	2	516.72119140625	2	516.321651	1030.62875	-1.1333	-0.00058516	0.21683	0.00011195	-0.9165	-0.00047321	516.3217509496014	38.56	0.45811	39.335	39.098	39.556	0.77451					18	8	3	0	0	0	0.20567	1	14208	14208		54.774	22.468	1	5705100			32924	7829	23947	24118	32066	32066					0.1146603233080441
LRKAGRSSSLF	11	Unmodified	_LRKAGRSSSLF_					0	0	0			REV__ENST00000303115.7_1_5:35879366-35879588:+|nuORF	REV__ENST00000303115.7_1_5:35879366-35879588:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	611.77392578125	2	611.356754	1220.69895	-0.31597	-0.00019317	-0.73156	-0.00044724	-1.0475	-0.00064041	611.3559763706429	139.62	0.85152	139.68	139	139.85	0.059906					25	16	2	0	0	0	0.73332	1	54609	54609		5.7319	2.4505	1	511230	+		32925	23443	23948	24119	32067	32067					0.09743285928584555
LRKAGRSSSLF	11	Unmodified	_LRKAGRSSSLF_					0	0	0			REV__ENST00000303115.7_1_5:35879366-35879588:+|nuORF	REV__ENST00000303115.7_1_5:35879366-35879588:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	611.5208740234375	2	611.356754	1220.69895	-0.31575	-0.00019304	-1.3407	-0.00081962	-1.6564	-0.0010127	611.3556229581621	141.88	1.0132	141.91	141.52	142.53	0.030731					28	19	2	0	0	0	0.99676	1	55641	55641		5.7319	2.4505	1	991510	+		32926	23443	23948	24119	32068	32068					0.09743285928584555
LRKAGRSSSLF	11	Unmodified	_LRKAGRSSSLF_					0	0	0			REV__ENST00000303115.7_1_5:35879366-35879588:+|nuORF	REV__ENST00000303115.7_1_5:35879366-35879588:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	611.356754	1220.69895	-0.31597	-0.00019317	-0.73156	-0.00044724	-1.0475	-0.00064041	611.3559763706429	139.62	0.85152	139.68	139	139.85	0.059906	-0.06139	-9.4635E-06	NaN	5.7319	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	511230	+		32927	23443	23948	24119							0.09743285928584555
LRKAIDYIK	9	Unmodified	_LRKAIDYIK_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	A375_MHC_IP_R2	2	373.94866943359375	3	373.901003	1118.68118	0.096807	3.6196E-05	-0.0088888	-3.3235E-06	0.087918	3.2873E-05	373.9008381855758	51.78	0.56123	52.532	52.27	52.831	0.75225					19	10	3	0	0	0	0.62591	1	19423	19423		13.615	3.4643	1	3108800			32928	9366	23949	24120	32069	32069					0.12658570673715985
LRKASQAK	8	Unmodified	_LRKASQAK_					0	0	0		ENSG00000136383|ENST00000258888|ALPK3	ENSG00000136383|ENST00000258888|ALPK3	ENSG00000136383|ENST00000258888|ALPK3	MULTI-SECPEP	A375_MHC_IP_R1	1	451.68243408203125	2	451.282526	900.550499	-0.26526	-0.00011971	-0.47602	-0.00021482	-0.74128	-0.00033453	451.2822649987939	32.137	0.61478	32.137	31.87	32.485	0					16	11	2	0	0	0	0.97021	1	10355	10355		15.847	0	1	2461600			32929	4784	23950	24121	32070	32070					0.09624599745552587
LRKASQAK	8	Unmodified	_LRKASQAK_					0	0	0		ENSG00000136383|ENST00000258888|ALPK3	ENSG00000136383|ENST00000258888|ALPK3	ENSG00000136383|ENST00000258888|ALPK3	MULTI-MATCH	A375_MHC_IP_R2	2		2	451.282526	900.550499	-0.30827	-0.00013912	-0.14184	-6.401E-05	-0.45011	-0.00020313	451.282345462487	31.231	0.51217	31.949	31.719	32.231	0.71857	-0.093706	0.00016829	NaN	15.847	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2312600			32930	4784	23950	24121							0.09624599745552587
LRKERFERRQR	11	Unmodified	_LRKERFERRQR_					0	0	0			REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP	REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-MSMS	A375_MHC_IP_R2	2	525.70947265625	3	525.309718	1572.90732	-0.36446	-0.00019146	-0.061685	-3.2404E-05	-0.42615	-0.00022386	525.3096229243879	134.84	4.2336	134.98	134.55	138.78	0.13901					268	82	7	0	0	0	0.73925	2	53390	53390;53810		0.08335	0	1	321760000	+		32931	17345	23951	24122	32071;32072	32071					0.1437870756551547
LRKERYKVS	9	Unmodified	_LRKERYKVS_					0	0	0			REV__ENSG00000047410|ENST00000367478|TPR	REV__ENSG00000047410|ENST00000367478|TPR	MULTI-SECPEP	A375_MHC_IP_R1	1	394.1453552246094	3	393.571657	1177.69314	0.14923	5.8734E-05	2.9655	0.0011671	3.1148	0.0012259	393.5729212025345	46.046	0.25489	46.046	45.839	46.094	0					6	4	2	0	0	0	0.775	1	16139	16139		4.1895	0.86986	1	594130	+		32932	16360	23952	24123	32073	32073					0.11140187416935987
LRKERYKVS	9	Unmodified	_LRKERYKVS_					0	0	0			REV__ENSG00000047410|ENST00000367478|TPR	REV__ENSG00000047410|ENST00000367478|TPR	MULTI-MATCH	A375_MHC_IP_R2	2		3	393.571657	1177.69314	-0.30286	-0.0001192	4.0007	0.0015746	3.6978	0.0014554	393.57309299792144	44.919	0.25771	45.688	45.492	45.75	0.7691	-0.17909	0.00035138	NaN	4.1895	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	962750	+		32933	16360	23952	24123							0.11140187416935987
LRKIDDRF	8	Unmodified	_LRKIDDRF_					0	0	0			REV__ENSG00000183914|ENST00000572933|DNAH2	REV__ENSG00000183914|ENST00000572933|DNAH2	MULTI-SECPEP	A375_MHC_IP_R2	2	355.4598083496094	3	354.873336	1061.59818	-0.17673	-6.2718E-05	-1.0672	-0.00037872	-1.2439	-0.00044144	354.87265462337564	45.995	0.45345	46.76	46.453	46.906	0.76518					14	8	2	0	0	0	0.93777	1	17121	17121		22.736	4.5899	1	870530	+		32934	21788	23953	24124	32074	32074					0.06984253945756791
LRKKIRKKIKK	11	Unmodified	_LRKKIRKKIKK_					0	0	0		tr|U7T0G8|U7T0G8_FUSNUShikimatedehydrogenase(NADP(+))OS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroEPE=3SV=1	tr|U7T0G8|U7T0G8_FUSNUShikimatedehydrogenase(NADP(+))OS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroEPE=3SV=1	tr|U7T0G8|U7T0G8_FUSNUShikimatedehydrogenase(NADP(+))OS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroEPE=3SV=1	MSMS	A375_MHC_IP_R2	2	720.42333984375	2	720.024655	1438.03476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.939	1	95.687	95.187	96.187	0.74821								0	0	0	0.16354	1	36071	36071		0.30703	0	1				32935	29883	23954	24125	32075	32075					0.3332608017765324
LRKKKKKKKG	10	Unmodified	_LRKKKKKKKG_					0	0	0			REV__ENST00000244745.3_2_6:21594329-21594497:+|nuORF	REV__ENST00000244745.3_2_6:21594329-21594497:+|nuORF	MSMS	A375_MHC_IP_R1	1	621.47900390625	2	621.448249	1240.88194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.825	1	83.825	83.325	84.325	0								0	0	0	0.15642	1	30681	30681		0	0	1		+		32936	23106	23955	24126	32076	32076					0.2711388478103345
LRKKKKKKKG	10	Unmodified	_LRKKKKKKKG_					0	0	0			REV__ENST00000244745.3_2_6:21594329-21594497:+|nuORF	REV__ENST00000244745.3_2_6:21594329-21594497:+|nuORF	MSMS	A375_MHC_IP_R1	1	621.4791870117188	2	621.448249	1240.88194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.499	1	86.499	85.999	86.999	0								0	0	0	0.15642	1	31719	31719		0	0	1		+		32937	23106	23955	24126	32077	32077					0.2711388478103345
LRKKNRETV	9	Unmodified	_LRKKNRETV_					0	0	0			REV__ENST00000534183.5_1_11:62105600-62156860:+|nuORF	REV__ENST00000534183.5_1_11:62105600-62156860:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	382.30352783203125	3	381.903406	1142.68839	-0.38572	-0.00014731	0.16545	6.3187E-05	-0.22026	-8.412E-05	381.9034623506	20.077	0.81126	20.687	20.146	20.958	0.6103					20	15	2	0	0	0	0.66474	1	6207	6207		10.151	1.1743	1	1933400	+		32938	20237	23956	24127	32078	32078					0.12275303274168436
LRKLERIL	8	Unmodified	_LRKLERIL_					0	0	0			REV__ENSG00000114770|ENST00000334444|ABCC5	REV__ENSG00000114770|ENST00000334444|ABCC5	MULTI-SECPEP	A375_MHC_IP_R1	1	521.2505493164062	2	520.850576	1039.6866	-0.76417	-0.00039802	0.49429	0.00025745	-0.26987	-0.00014056	520.850791166979	68.344	0.457	68.344	68.108	68.565	0					13	8	3	0	0	0	0.972	1	24799	24799		9.3831	1.2276	1	3008300	+		32939	17841	23957	24128	32079	32079					0.16834294256227622
LRKQREEITAI	11	Unmodified	_LRKQREEITAI_					0	0	0		nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;ENST00000465814.5_1_11:72396711-72407721:-|nuORF;nc|ENSG00000186635|Q96P48-5|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	MSMS	A375_MHC_IP_R1	1	678.7630615234375	2	678.901525	1355.7885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.08	1	100.08	99.585	100.58	0								0	0	0	0.16302	1	36779	36779		2.9952	0.49676	1				32940	8766	23958	24129	32080	32080					0.12483495817309631
LRKRKAILY	9	Unmodified	_LRKRKAILY_					0	0	0		ENST00000339362.9_1_15:73597096-73597282:+|nuORF	ENST00000339362.9_1_15:73597096-73597282:+|nuORF	ENST00000339362.9_1_15:73597096-73597282:+|nuORF	MSMS	A375_MHC_IP_R1	1	580.870361328125	2	580.88495	1159.75535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.085	1	90.085	89.585	90.585	0								0	0	0	0.15486	1	33104	33104		2.3027	0	1				32941	10844	23959	24130	32081	32081					0.18185958555932302
LRKRKNTRRH	10	Unmodified	_LRKRKNTRRH_					0	0	0			REV__ENST00000470145.2_1_20:31016136-31017171:+|nuORF	REV__ENST00000470145.2_1_20:31016136-31017171:+|nuORF	MSMS	A375_MHC_IP_R2	2	682.9249877929688	2	682.926535	1363.83852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.94	1	118.55	118.05	119.05	0.60909								0	0	0	0.15531	1	44712	44712		3.5965	0.31518	1		+		32942	25101	23960	24131	32082	32082					0.17115088056470995
LRKRKQKY	8	Unmodified	_LRKRKQKY_					0	0	0		nc|ENSG00000153832|Q8NEA4-3|FBXO36;ENSG00000153832|ENST00000283946|FBXO36;FBXO36|p.G181E|1|0.22|ENSG00000153832|chr2:230010859-230010859|G/A|missense_variant	nc|ENSG00000153832|Q8NEA4-3|FBXO36	nc|ENSG00000153832|Q8NEA4-3|FBXO36	MULTI-SECPEP	A375_MHC_IP_R1	1	374.3086853027344	3	373.908492	1118.70365	0.1399	5.2311E-05	-0.31949	-0.00011946	-0.17959	-6.7149E-05	373.9085756543886	19.243	0.24093	19.243	19.23	19.471	0					6	5	2	0	0	0	0.972	1	4720	4720		3.5965	0.27685	1	13969000			32943	6044	23961	24132	32083	32083					0.1490421486203104
LRLCRTQHE	9	Unmodified	_LRLCRTQHE_					0	0	0		PPIB|p.S5Cfs*31|1|0.04|ENSG00000166794|chr15:64162973-64162974|-/C|frameshift_variant	PPIB|p.S5Cfs*31|1|0.04|ENSG00000166794|chr15:64162973-64162974|-/C|frameshift_variant	PPIB|p.S5Cfs*31|1|0.04|ENSG00000166794|chr15:64162973-64162974|-/C|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	386.27252197265625	3	385.87323	1154.59786	-0.059232	-2.2856E-05	-1.8858	-0.00072768	-1.945	-0.00075054	385.8726074348748	42.674	0.71058	43.446	43.014	43.724	0.7724					19	13	2	0	0	0	0.76827	1	15887	15887		4.1895	0	1	4047400			32944	15212	23962	24133	32084	32084					0.0267451095423894
LRLGAALR	8	Unmodified	_LRLGAALR_					0	0	0			REV__nc|ENSG00000148358|Q5VW38-3|GPR107	REV__nc|ENSG00000148358|Q5VW38-3|GPR107	MULTI-SECPEP	A375_MHC_IP_R1	1	435.6876220703125	2	435.287611	868.56067	-0.20521	-8.9324E-05	0.011763	5.1201E-06	-0.19344	-8.4204E-05	435.2875731447471	34.228	0.35348	34.228	34.052	34.405	0					11	6	2	0	0	0	0.972	1	11270	11270		12.532	0	1	5510900	+		32945	19625	23963	24134	32085	32085					0.12113207470792986
LRLGRSTLL	9	Unmodified	_LRLGRSTLL_					0	0	0		ENSG00000168275|ENST00000366615|COA6	ENSG00000168275|ENST00000366615|COA6	ENSG00000168275|ENST00000366615|COA6	MULTI-MSMS	A375_MHC_IP_R2	2	514.9249267578125	2	514.832383	1027.65021	-1.0535	-0.00054239	-0.052085	-2.6815E-05	-1.1056	-0.0005692	514.832334755277	58.257	0.50838	59.006	58.779	59.287	0.74894					17	9	2	0	0	0	0.59266	1	22047	22047		15.248	0	1	7193900			32946	7282	23964	24135	32086	32086					0.13749417359508698
LRLHYVHGDS	10	Unmodified	_LRLHYVHGDS_					0	0	0		ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	MULTI-SECPEP	A375_MHC_IP_R1	1	400.2999572753906	3	399.543878	1195.60981	-0.39967	-0.00015969	0.80555	0.00032185	0.40588	0.00016217	399.87853246738894	39.616	0.50487	39.616	39.34	39.845	0					18	9	2	0	0	0	0.87163	1	13538	13538		12.175	0	1	4034000			32947	6453	23965	24136	32087	32087					0.019824509690806735
LRLIANAIR	9	Unmodified	_LRLIANAIR_					0	0	0		nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851|MICAL2	MSMS	A375_MHC_IP_R2	2	520.3815307617188	2	520.340375	1038.6662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.99	1	149.01	148.51	149.51	0.018707								0	0	0	0.15486	1	57842	57842		0	0	1				32948	14607	23966	24137	32088	32088					0.14841123596374928
LRLIDEPT	8	Unmodified	_LRLIDEPT_					0	0	0			REV__ENST00000578942.5_1_18:210315-211281:+|nuORF	REV__ENST00000578942.5_1_18:210315-211281:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	479.1734619140625	2	478.7742	955.533846	-0.80971	-0.00038767	-0.92378	-0.00044228	-1.7335	-0.00082995	478.7737283080982	143.66	0.44086	143.66	143.49	143.94	0					10	8	2	0	0	0	0.972	1	55133	55133		9.3474	4.1168	1	922310	+		32949	17176	23967	24138	32089	32089					0.054300540689382615
LRLKAKNV	8	Unmodified	_LRLKAKNV_					0	0	0			REV__COL28A1|p.E196K|1|0.65|ENSG00000215018|chr7:7531443-7531443|C/T|missense_variant	REV__COL28A1|p.E196K|1|0.65|ENSG00000215018|chr7:7531443-7531443|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	471.1944274902344	2	471.316369	940.618185	-0.74158	-0.00034952	0.099196	4.6753E-05	-0.64238	-0.00030276	471.31639491801536	51.278	0.76051	52.03	51.713	52.473	0.75225					39	14	4	0	0	0	0.94479	1	19205	19205		8.5933	0	1	43240000	+		32950	15827	23968	24139	32090	32090					0.14550049676358867
LRLKRRREY	9	Unmodified	_LRLKRRREY_					0	0	0			REV__ENSG00000166004|ENST00000325212|CEP295	REV__ENSG00000166004|ENST00000325212|CEP295	MSMS	A375_MHC_IP_R2	2	645.31298828125	2	645.399287	1288.78402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.24	1	148.26	147.76	148.76	0.018707								0	0	0	0.15486	1	57580	57580		0.52476	0	1		+		32951	20642	23969	24140	32091	32091					0.15118076185081009
LRLLGSTSH	9	Unmodified	_LRLLGSTSH_					0	0	0		ENST00000550265.5_1_12:53607169-53614138:-|nuORF	ENST00000550265.5_1_12:53607169-53614138:-|nuORF	ENST00000550265.5_1_12:53607169-53614138:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	492.68450927734375	2	492.285266	982.555979	-0.56804	-0.00027964	0.057035	2.8077E-05	-0.511	-0.00025156	492.2852050664797	131.76	1.7697	131.76	130.92	132.69	0					63	34	2	0	0	0	0.75523	1	50751	50751		2.0598	0	1	7482600			32952	13366	23970	24141	32092	32092					0.06400278537375925
LRLLHRRQKRI	11	Unmodified	_LRLLHRRQKRI_					0	0	0		ENSG00000164099|ENST00000296498|PRSS12	ENSG00000164099|ENST00000296498|PRSS12	ENSG00000164099|ENST00000296498|PRSS12	MSMS	A375_MHC_IP_R1	1	745.0346069335938	2	744.989135	1487.96372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.81	1	125.81	125.31	126.31	0								0	0	0	0.1636	1	47954	47954		0	0	1				32953	6779	23971	24142	32093	32093					0.23925380192849843
LRLLRLIQRLK	11	Unmodified	_LRLLRLIQRLK_					0	0	0			REV__nc|ENSG00000054654|Q8WXH0|SYNE2	REV__nc|ENSG00000054654|Q8WXH0|SYNE2	MSMS	A375_MHC_IP_R2	2	711.6143798828125	2	711.493188	1420.97182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.54	1	117.2	116.7	117.7	0.65962								0	0	0	0.1636	1	44040	44040		0	0	1		+		32954	16407	23972	24143	32094	32094					0.2781751438960782
LRLLRLRLLVR	11	Unmodified	_LRLLRLRLLVR_					0	0	0		KLK12|p.P117L|1|0.27|ENSG00000186474|chr19:51031983-51031983|G/A|missense_variant	KLK12|p.P117L|1|0.27|ENSG00000186474|chr19:51031983-51031983|G/A|missense_variant	KLK12|p.P117L|1|0.27|ENSG00000186474|chr19:51031983-51031983|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	710.999267578125	2	711.00118	1419.98781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.963	1	82.706	82.206	83.206	0.74293								0	0	0	0.1636	1	31135	31135		0	0	1				32955	14228	23973	24144	32095	32095					0.2946122062651284
LRLQKLLRKAA	11	Unmodified	_LRLQKLLRKAA_					0	0	0		ENSG00000283787|ENST00000640310|PRR33	ENSG00000283787|ENST00000640310|PRR33	ENSG00000283787|ENST00000640310|PRR33	MSMS	A375_MHC_IP_R2	2	655.782958984375	2	655.443163	1308.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.47	1	144.49	143.99	144.99	0.024414								0	0	0	0.16353	1	56431	56431		0.35063	0.043601	1				32956	10051	23974	24145	32096	32096					0.22969277055835846
LRLQRVIHRKW	11	Unmodified	_LRLQRVIHRKW_					0	0	0			REV__ENSG00000168010|ENST00000321297|ATG16L2	REV__ENSG00000168010|ENST00000321297|ATG16L2	MULTI-SECPEP	A375_MHC_IP_R1	1	376.94000244140625	4	376.988844	1503.92627	0.14359	5.413E-05	-1.0559	-0.00039807	-0.91233	-0.00034394	377.2392567231747	19.243	0.14727	19.243	19.221	19.368	0					10	4	3	0	0	0	0.99916	1	4684	4684		4.4062	4.4062	1	38845000	+		32957	20818	23975	24146	32097	32097					0.19446288927224487
LRLRKLLKQKK	11	Unmodified	_LRLRKLLKQKK_					0	0	0			REV__DIRAS3|p.E10K|1|0.45|ENSG00000162595|chr1:68047270-68047270|C/T|missense_variant	REV__DIRAS3|p.E10K|1|0.45|ENSG00000162595|chr1:68047270-68047270|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	712.40869140625	2	712.501013	1422.98747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.997	1	76.738	76.238	77.238	0.74052								0	0	0	0.1636	1	28850	28850		0	0	1		+		32958	15992	23976	24147	32098	32098					0.29289800906644814
LRLRKPPSF	9	Unmodified	_LRLRKPPSF_					0	0	0			REV__ENSG00000133247|ENST00000255613|KMT5C	REV__ENSG00000133247|ENST00000255613|KMT5C	MULTI-SECPEP	A375_MHC_IP_R2	2	371.6136474609375	3	371.901226	1112.68185	0.41379	0.00015389	-0.75606	-0.00028118	-0.34227	-0.00012729	371.90095578461893	31.216	0.35764	31.935	31.719	32.077	0.71857					9	6	2	0	0	0	0.79191	1	10998	10998		2.086	2.086	1	1219200	+		32959	18714	23977	24148	32099	32099					0.13001410113474776
LRLTKPRRF	9	Unmodified	_LRLTKPRRF_					0	0	0			REV__ENST00000582736.1_1_17:27047023-27047984:+|nuORF	REV__ENST00000582736.1_1_17:27047023-27047984:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	396.9717102050781	3	396.255891	1185.74584	-0.25938	-0.00010278	0.2115	8.3806E-05	-0.047885	-1.8975E-05	396.2559481191004	27.811	0.75506	27.811	27.533	28.288	0					35	14	3	0	0	0	0.6343	1	8496	8496		12.873	1.3779	1	16160000	+		32960	22357	23978	24149	32100	32100					0.16040190270382482
LRLTKPRRF	9	Unmodified	_LRLTKPRRF_					0	0	0			REV__ENST00000582736.1_1_17:27047023-27047984:+|nuORF	REV__ENST00000582736.1_1_17:27047023-27047984:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	396.255891	1185.74584	-0.34521	-0.00013679	0.15986	6.3347E-05	-0.18534	-7.3443E-05	396.25598413106854	26.831	0.56321	27.491	27.313	27.876	0.65992	-0.15993	-4.0559E-05	NaN	12.873	26	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19572000	+		32961	22357	23978	24149							0.16040190270382482
LRLVRGQARY	10	Unmodified	_LRLVRGQARY_					0	0	0			REV__nc|ENSG00000100503|Q8N4C6-6|NIN	REV__nc|ENSG00000100503|Q8N4C6-6|NIN	MSMS	A375_MHC_IP_R2	2	411.2778625488281	3	411.250918	1230.73092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.752	1	67.488	66.988	67.988	0.73631								0	0	0	0.15245	1	25288	25288		12.873	4.9272	1		+		32962	17098	23979	24150	32101	32101					0.12478698402424016
LRLYLRKEGY	10	Unmodified	_LRLYLRKEGY_					0	0	0		ENSG00000138107|ENST00000369905|ACTR1A;ENST00000480947.1_1_10:104243895-104247966:-|nuORF	ENSG00000138107|ENST00000369905|ACTR1A	ENSG00000138107|ENST00000369905|ACTR1A	MULTI-MSMS	A375_MHC_IP_R1	1	655.7830810546875	2	655.882604	1309.75066	-0.8027	-0.00052648	1.2523	0.00082138	0.44962	0.0002949	656.384685694917	143.92	0.49358	143.92	143.54	144.03	0					12	9	2	0	0	0	0.72378	1	55136	55136		1.6526	0	1	790000			32963	4958	23980	24151	32102	32102					0.10817029622535301
LRLYTRKKP	9	Unmodified	_LRLYTRKKP_					0	0	0		nc|ENSG00000163660|Q9UK58-6|CCNL1;ENSG00000163660|ENST00000295926|CCNL1;ENST00000464679.5_1_3:156867272-156869982:-|nuORF;ENST00000476367.5_1_3:156867074-156874849:-|nuORF;ENST00000470121.5_1_3:156866032-156869342:-|nuORF;ENST00000474539.5_1_3:156866032-156868247:-|nuORF	nc|ENSG00000163660|Q9UK58-6|CCNL1	nc|ENSG00000163660|Q9UK58-6|CCNL1	MULTI-MSMS	A375_MHC_IP_R1	1	392.629150390625	3	392.252147	1173.73461	-0.075541	-2.9631E-05	-0.45652	-0.00017907	-0.53206	-0.0002087	392.58646226319473	19.243	0.14727	19.243	19.221	19.368	0					6	4	2	0	0	0	0.64971	1	4737	4737		11.495	2.5185	1	21733000			32964	6704	23981	24152	32103	32103					0.15469368176241005
LRMFFDCLY	9	Unmodified	_LRMFFDCLY_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-4|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-SECPEP	A375_MHC_IP_R1	1	604.6849975585938	2	604.285563	1206.55657	-0.37111	-0.00022426	-0.28997	-0.00017523	-0.66109	-0.00039948	604.2853182386373	75.84	0.65356	75.84	75.464	76.117	0					26	12	3	0	0	0	0.4261	1	27600	27600		37.974	12.575	1	6614400			32965	1600	23982	24153	32104	32104					-0.038443861294354065
LRMFLKGFRLP	11	Unmodified	_LRMFLKGFRLP_					0	0	0		ARFGEF1|p.E786K|1|0.38|ENSG00000066777|chr8:67258170-67258170|C/T|missense_variant	ARFGEF1|p.E786K|1|0.38|ENSG00000066777|chr8:67258170-67258170|C/T|missense_variant	ARFGEF1|p.E786K|1|0.38|ENSG00000066777|chr8:67258170-67258170|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	689.813232421875	2	689.413017	1376.81148	-0.48109	-0.00033167	0.2121	0.00014623	-0.26899	-0.00018545	689.4130251515027	145.16	0.47908	145.19	144.89	145.37	0.021408					26	19	2	0	0	0	0.73902	1	56666	56666		0.30703	0	1	459070			32966	168	23983	24154	32105	32105					0.1381484340111001
LRNKPEWY	8	Unmodified	_LRNKPEWY_					0	0	0		ENST00000477078.2_1_10:106037658-106045722:+|nuORF;nc|ENSG00000065621|Q9H4Y5-2|GSTO2;nc|ENSG00000065621|Q9H4Y5-3|GSTO2;ENSG00000065621|ENST00000338595|GSTO2	ENST00000477078.2_1_10:106037658-106045722:+|nuORF	ENST00000477078.2_1_10:106037658-106045722:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	368.6064758300781	3	369.197819	1104.57163	0.20227	7.4677E-05	0.79992	0.00029533	1.0022	0.00037001	369.5326498933818	65.13	0.25172	65.13	65.005	65.257	0					7	4	2	0	0	0	0.972	1	23552	23552		7.2892	1.9923	1	830760			32967	1391	23984	24155	32106	32106					0.023525650544115706
LRNKSLDLI	9	Unmodified	_LRNKSLDLI_					0	0	0			REV__ENSG00000174482|ENST00000698399|LINGO2	REV__ENSG00000174482|ENST00000698399|LINGO2	MULTI-MSMS	A375_MHC_IP_R1	1	358.28887939453125	3	357.888874	1070.64479	0.26171	9.3662E-05	-0.29402	-0.00010523	-0.032311	-1.1564E-05	357.88877388179236	45.662	0.70887	45.662	45.334	46.043	0					27	13	3	0	0	0	0.1915	1	15985	15985		38.615	10.12	1	7302800	+		32968	21287	23985	24156	32107	32107					0.11229693777045213
LRNKSLDLI	9	Unmodified	_LRNKSLDLI_					0	0	0			REV__ENSG00000174482|ENST00000698399|LINGO2	REV__ENSG00000174482|ENST00000698399|LINGO2	MULTI-SECPEP	A375_MHC_IP_R1	1	358.28887939453125	3	357.888874	1070.64479	0.26171	9.3662E-05	-0.29402	-0.00010523	-0.032311	-1.1564E-05	357.88877388179236	45.662	0.70887	45.662	45.334	46.043	0					27	13	3	0	0	0	0.38578	1	15985	15985		38.615	10.12	1	7302800	+		32969	21287	23985	24156	32108	32108					0.11229693777045213
LRNKSLDLI	9	Unmodified	_LRNKSLDLI_					0	0	0			REV__ENSG00000174482|ENST00000698399|LINGO2	REV__ENSG00000174482|ENST00000698399|LINGO2	MULTI-MSMS	A375_MHC_IP_R2	2	358.2885437011719	3	357.888874	1070.64479	-0.28345	-0.00010144	-0.21162	-7.5735E-05	-0.49506	-0.00017718	357.8887674845108	44.601	0.86516	45.37	45.086	45.951	0.76909					26	16	3	0	0	0	0.18338	1	16636	16636		39.213	11.99	1	6167400	+		32970	21287	23985	24156	32109	32109					0.11229693777045213
LRNLQKLVL	9	Unmodified	_LRNLQKLVL_					0	0	0		ENSG00000239810|ENST00000619922|PRAMEF11;PRAMEF11|p.S242F|1|0.26|ENSG00000239810|chr1:12827399-12827399|G/A|missense_variant	ENSG00000239810|ENST00000619922|PRAMEF11	ENSG00000239810|ENST00000619922|PRAMEF11	MULTI-MSMS	A375_MHC_IP_R2	2	366.29266357421875	3	366.244881	1095.71281	-0.021168	-7.7526E-06	-0.032325	-1.1839E-05	-0.053492	-1.9591E-05	366.2448034709782	49.039	0.96466	49.796	49.03	49.995	0.75736					25	18	2	0	0	0	0.64971	1	18261	18261		11.495	0	1	877470			32971	9768	23986	24157	32110	32110					0.16878563427690096
LRNPDIRVL	9	Unmodified	_LRNPDIRVL_					0	0	0		ENSG00000114742|ENST00000302313|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;nc|ENSG00000114742|Q8TAF3-5|WDR48	ENSG00000114742|ENST00000302313|WDR48	ENSG00000114742|ENST00000302313|WDR48	MULTI-SECPEP	A375_MHC_IP_R1	1	366.2927551269531	3	365.892619	1094.65603	0.574	0.00021002	-0.016663	-6.097E-06	0.55734	0.00020393	365.89257499959524	49.565	0.50919	49.565	49.336	49.845	0					15	9	2	0	0	0	0.26374	1	17529	17529		47.732	28.37	1	3803700			32972	3241	23987	24158	32111	32111					0.11248515871170639
LRNPDIRVL	9	Unmodified	_LRNPDIRVL_					0	0	0		ENSG00000114742|ENST00000302313|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;nc|ENSG00000114742|Q8TAF3-5|WDR48	ENSG00000114742|ENST00000302313|WDR48	ENSG00000114742|ENST00000302313|WDR48	MULTI-SECPEP	A375_MHC_IP_R2	2	366.29266357421875	3	365.892619	1094.65603	0.021932	8.0249E-06	-0.029817	-1.091E-05	-0.0078847	-2.885E-06	365.8925536981358	48.694	0.45844	49.452	49.13	49.588	0.75736					19	8	3	0	0	0	0.39273	1	18261	18261		37.075	16.494	1	2644600			32973	3241	23987	24158	32112	32112					0.11248515871170639
LRNPNDKY	8	Unmodified	_LRNPNDKY_					0	0	0		ENSG00000181104|ENST00000319211|F2R	ENSG00000181104|ENST00000319211|F2R	ENSG00000181104|ENST00000319211|F2R	MULTI-SECPEP	A375_MHC_IP_R1	1	510.9736328125	2	510.267073	1018.51959	-0.56267	-0.00028711	-0.30157	-0.00015388	-0.86424	-0.00044099	510.2674150339846	27.255	0.2533	27.255	27.078	27.331	0					5	4	2	0	0	0	0.972	1	8231	8231		10.074	7.0787	1	1263600			32974	8334	23988	24159	32113	32113					0.011074016406610099
LRNQYKIVSER	11	Unmodified	_LRNQYKIVSER_					0	0	0			REV__MORC1|p.R910Kfs*4|1|0.49|ENSG00000114487|chr3:108963485-108963486|TT/-|frameshift_variant	REV__MORC1|p.R910Kfs*4|1|0.49|ENSG00000114487|chr3:108963485-108963486|TT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	469.3571472167969	3	469.268525	1404.78375	-0.88083	-0.00041334	-0.12796	-6.0049E-05	-1.0088	-0.00047339	469.26846495817296	24.134	0.76464	24.777	24.499	25.263	0.64368					33	14	4	0	0	0	0.99971	1	7846	7846		3.8459	3.8459	1	18057000	+		32975	17827	23989	24160	32114	32114					0.09754611674543412
LRNRFSSHGLW	11	Unmodified	_LRNRFSSHGLW_					0	0	0		ENST00000409444.6_2_2:202490823-202492056:-|nuORF	ENST00000409444.6_2_2:202490823-202492056:-|nuORF	ENST00000409444.6_2_2:202490823-202492056:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	458.6455078125	3	458.245944	1371.716	-0.40741	-0.0001867	-0.79497	-0.00036429	-1.2024	-0.00055099	458.24565802251203	19.394	0.25282	19.394	19.268	19.521	0					7	4	2	0	0	0	0.99883	1	4847	4847		4.7159	0.59929	1	5866600			32976	11634	23990	24161	32115	32115					0.04501206534405355
LRPDGPTI	8	Unmodified	_LRPDGPTI_					0	0	0			REV__ENSG00000012232|ENST00000220562|EXTL3	REV__ENSG00000012232|ENST00000220562|EXTL3	MULTI-SECPEP	A375_MHC_IP_R1	1	435.1477966308594	2	434.747985	867.481417	-0.2506	-0.00010895	0.0040641	1.7668E-06	-0.24654	-0.00010718	434.7478941860045	47.133	0.46461	47.133	46.952	47.416	0					12	8	2	0	0	0	0.93416	1	16606	16606		5.2307	0	1	1649200	+		32977	16223	23991	24162	32116	32116					0.04237515726015317
LRPDGSLPGFD	11	Unmodified	_LRPDGSLPGFD_					0	0	0		ENSG00000101203|ENST00000358894|COL20A1;nc|ENSG00000101203|Q9P218-2|COL20A1;nc|ENSG00000101203|Q9P218-3|COL20A1;ENST00000479501.5_1_20:61943331-61950713:+|nuORF	ENSG00000101203|ENST00000358894|COL20A1	ENSG00000101203|ENST00000358894|COL20A1	MSMS	A375_MHC_IP_R1	1	391.8420104980469	3	391.868139	1172.58259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.311	1	21.311	20.811	21.811	0								0	0	0	0.1624	1	5586	5586		6.2344	0.028574	1				32978	2271	23992	24163	32117	32117					0.003199226380502296
LRPDMVLEL	9	Unmodified	_LRPDMVLEL_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;ENST00000412649.5_1_22:19170842-19171202:-|nuORF	ENSG00000070371|ENST00000427926|CLTCL1	ENSG00000070371|ENST00000427926|CLTCL1	MULTI-SECPEP	A375_MHC_IP_R1	1	543.7035522460938	2	543.30481	1084.59507	-0.5266	-0.0002861	-0.72663	-0.00039478	-1.2532	-0.00068088	543.3041738045981	101.92	0.45657	101.92	101.7	102.15	0					14	8	2	0	0	0	0.40377	1	37462	37462		41.956	11.319	1	2506000			32979	1491	23993	24164	32118	32118					0.05615242776730156
LRPEDILRF	9	Unmodified	_LRPEDILRF_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A;POLR1A|p.E1343K|1|0.4|ENSG00000068654|chr2:86038707-86038707|C/T|missense_variant	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	A375_MHC_IP_R2	2	386.95550537109375	3	386.892507	1157.65569	0.043304	1.6754E-05	-0.73846	-0.0002857	-0.69515	-0.00026895	386.8921315391583	46.781	1.2743	47.542	47.155	48.429	0.76128					54	24	4	0	0	0	0.64945	1	17648	17648		11.518	11.518	1	33312000			32980	1462	23994	24165	32119	32119					0.08317096151336045
LRPGPRQGN	9	Unmodified	_LRPGPRQGN_					0	0	0			REV__ENST00000529747.5_1_8:144917834-144918303:-|nuORF	REV__ENST00000529747.5_1_8:144917834-144918303:-|nuORF	MSMS	A375_MHC_IP_R1	1	497.6973571777344	2	497.780682	993.546811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.59	1	95.59	95.09	96.09	0								0	0	0	0.1499	1	35136	35136		21.747	0.87544	1		+		32981	25828	23995	24166	32120	32120					0.04977929971710182
LRPHDEDI	8	Unmodified	_LRPHDEDI_					0	0	0		ENSG00000186496|ENST00000589332|ZNF396;nc|ENSG00000186496|Q96N95-3|ZNF396	ENSG00000186496|ENST00000589332|ZNF396	ENSG00000186496|ENST00000589332|ZNF396	MSMS	A375_MHC_IP_R2	2	497.7201843261719	2	497.751256	993.487959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.374	1	95.119	94.619	95.619	0.74474								0	0	0	0.16876	1	35865	35865		20.871	3.9289	1				32982	8753	23996	24167	32121	32121					-0.00904591113294373
LRPHRALRL	9	Unmodified	_LRPHRALRL_					0	0	0			REV__ENST00000350796.7_1_7:6202360-6202609:-|nuORF	REV__ENST00000350796.7_1_7:6202360-6202609:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	377.9343566894531	3	377.912236	1130.71488	0.045588	1.7228E-05	0.24711	9.3386E-05	0.2927	0.00011061	377.91163736100907	38.183	0.96866	38.183	37.812	38.78	0					48	18	5	0	0	0	0.72761	1	13141	13141		4.5289	0	1	57421000	+		32983	23794	23997	24168	32122	32122					0.15475036956172517
LRPLLVKKI	9	Unmodified	_LRPLLVKKI_					0	0	0		nc|ENSG00000050130|Q9P055-2|JKAMP;nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	MULTI-MSMS	A375_MHC_IP_R1	1	360.9936828613281	3	360.593622	1078.75904	-0.026032	-9.3869E-06	0.12492	4.5044E-05	0.098884	3.5657E-05	360.59356235853227	39.578	0.50487	39.578	39.34	39.845	0					17	9	3	0	0	0	0.23226	1	13548	13548		35.612	25.462	1	4479700			32984	1227	23998	24169	32123	32123					0.22280628329781393
LRPLLVKKI	9	Unmodified	_LRPLLVKKI_					0	0	0		nc|ENSG00000050130|Q9P055-2|JKAMP;nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	MULTI-MSMS	A375_MHC_IP_R2	2	360.9933166503906	3	360.593622	1078.75904	-0.5819	-0.00020983	-0.034157	-1.2317E-05	-0.61606	-0.00022215	360.59348195267376	38.389	0.45605	39.164	38.997	39.453	0.77451					15	8	3	0	0	0	0.10637	1	14163	14163		49.527	31.154	1	2958700			32985	1227	23998	24169	32124	32124					0.22280628329781393
LRPPPTPLS	9	Unmodified	_LRPPPTPLS_					0	0	0			REV__PNPLA1|p.G395R|1|0.39|ENSG00000180316|chr6:36302268-36302268|G/A|missense_variant	REV__PNPLA1|p.G395R|1|0.39|ENSG00000180316|chr6:36302268-36302268|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	489.6922912597656	2	489.292559	976.570566	-0.2658	-0.00013005	0.037418	1.8308E-05	-0.22838	-0.00011174	489.2925252223333	43.644	0.81587	43.644	43.4	44.216	0					32	15	3	0	0	0	0.021889	1	15181	15181		81.89	24.419	1	7541200	+		32986	27815	23999	24170	32125	32125					0.0813435068552053
LRPPPTPLS	9	Unmodified	_LRPPPTPLS_					0	0	0			REV__PNPLA1|p.G395R|1|0.39|ENSG00000180316|chr6:36302268-36302268|G/A|missense_variant	REV__PNPLA1|p.G395R|1|0.39|ENSG00000180316|chr6:36302268-36302268|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	489.6924133300781	2	489.292559	976.570566	-0.2658	-0.00013005	0.037418	1.8308E-05	-0.22838	-0.00011174	489.2925252223333	43.644	0.81587	43.644	43.4	44.216	0					32	15	3	0	0	0	0.04395	1	15164	15164		81.89	33.544	1	7541200	+		32987	27815	23999	24170	32126	32126					0.0813435068552053
LRPPPTPLS	9	Unmodified	_LRPPPTPLS_					0	0	0			REV__PNPLA1|p.G395R|1|0.39|ENSG00000180316|chr6:36302268-36302268|G/A|missense_variant	REV__PNPLA1|p.G395R|1|0.39|ENSG00000180316|chr6:36302268-36302268|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	489.69195556640625	2	489.292559	976.570566	-0.47764	-0.0002337	-0.12201	-5.9699E-05	-0.59965	-0.0002934	489.2924380096117	42.9	0.709	43.672	43.319	44.028	0.7724					31	13	3	0	0	0	0.012968	1	15926	15926		92.491	35.02	1	7437400	+		32988	27815	23999	24170	32127	32127					0.0813435068552053
LRPPPTPLS	9	Unmodified	_LRPPPTPLS_					0	0	0			REV__PNPLA1|p.G395R|1|0.39|ENSG00000180316|chr6:36302268-36302268|G/A|missense_variant	REV__PNPLA1|p.G395R|1|0.39|ENSG00000180316|chr6:36302268-36302268|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	489.1493835449219	2	489.292559	976.570566	-0.47764	-0.0002337	-0.12201	-5.9699E-05	-0.59965	-0.0002934	489.2924380096117	42.9	0.709	43.672	43.319	44.028	0.7724					31	13	3	0	0	0	0.20645	1	16058	16058		47.749	15.443	1	7437400	+		32989	27815	23999	24170	32128	32128					0.0813435068552053
LRPQGARLF	9	Unmodified	_LRPQGARLF_					0	0	0			REV__ENSG00000248905|ENST00000616417|FMN1	REV__ENSG00000248905|ENST00000616417|FMN1	MSMS	A375_MHC_IP_R2	2	353.2574768066406	3	353.213692	1056.61925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.934	1	39.708	39.208	40.208	0.77451								0	0	0	0.15486	1	14355	14355		8.1555	1.5321	1		+		32990	15710	24000	24171	32129	32129					0.09320264045254589
LRPSLHRAAL	10	Unmodified	_LRPSLHRAAL_					0	0	0		nc|ENSG00000179583|P33076-3|CIITA	nc|ENSG00000179583|P33076-3|CIITA	nc|ENSG00000179583|P33076-3|CIITA	MSMS	A375_MHC_IP_R2	2	378.6205749511719	3	378.568247	1132.68291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.242	1	50.996	50.496	51.496	0.75406								0	0	0	0.15245	1	18894	18894		12.873	0.63195	1				32991	14793	24001	24172	32130	32130					0.12187624482339743
LRPTTPTMTSF	11	Unmodified	_LRPTTPTMTSF_					0	0	0			REV__ENST00000426402.2_1_7:38402529-38402688:-|nuORF	REV__ENST00000426402.2_1_7:38402529-38402688:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	417.28228759765625	3	417.884913	1250.63291	-0.3356	-0.00014024	1.1516	0.00048123	0.81598	0.00034098	417.88544776737547	24.238	0.15183	24.882	24.806	24.958	0.64368					4	2	2	0	0	0	0.9836	1	7933	7933		9.2438	0.26753	1	4302700	+		32992	24652	24002	24173	32131	32131					0.01761708971525877
LRQILPKL	8	Unmodified	_LRQILPKL_					0	0	0		ENSG00000188649|ENST00000646931|CC2D2B;nc|ENSG00000188649|Q6DHV5-2|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	MULTI-MSMS	A375_MHC_IP_R2	2	981.5570068359375	1	980.661512	979.654236	0.19259	0.00018886	-2.3157	-0.0022709	-2.1231	-0.002082	980.6585726196212	111.98	0.30645	112.7	112.51	112.82	0.72458					8	5	2	0	0	0	0.77797	1	42185	42185		2.3027	0	1	3368400			32993	8922	24003	24174	32132	32132					0.1635950685321177
LRQILRLLRLR	11	Unmodified	_LRQILRLLRLR_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MSMS	A375_MHC_IP_R1	1	725.42919921875	2	725.496262	1448.97797	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.02	1	119.02	118.52	119.52	0								0	0	0	0.16354	1	43924	43924		0.30703	0.03801	1				32994	1262	24004	24175	32133	32133					0.2714403262114047
LRQKVPVA	8	Unmodified	_LRQKVPVA_					0	0	0			REV__ENST00000311534.6_1_9:88889144-88896972:-|nuORF	REV__ENST00000311534.6_1_9:88889144-88896972:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	456.1950988769531	2	455.795269	909.575986	-0.030462	-1.3884E-05	-0.15598	-7.1097E-05	-0.18645	-8.4982E-05	455.79517804007776	35.702	0.56297	35.702	35.369	35.932	0					16	10	2	0	0	0	0.86765	1	11893	11893		32.117	3.6301	1	3567600	+		32995	23508	24005	24176	32134	32134					0.1175807426798201
LRQLVLAV	8	Unmodified	_LRQLVLAV_					0	0	0			REV__ENSG00000198730|ENST00000361367|CTR9	REV__ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	A375_MHC_IP_R1	1	456.7052917480469	2	456.30547	910.596387	-0.24169	-0.00011028	0.15603	7.1197E-05	-0.085662	-3.9088E-05	456.3053954800481	75.065	0.60695	75.065	74.857	75.464	0					17	11	2	0	0	0	0.75805	1	27348	27348		18.135	1.1927	1	1657800	+		32996	22405	24006	24177	32135	32135					0.13751244927777861
LRQPGALL	8	Unmodified	_LRQPGALL_					0	0	0		ENST00000270502.6_1_19:11039810-11040236:+|nuORF	ENST00000270502.6_1_19:11039810-11040236:+|nuORF	ENST00000270502.6_1_19:11039810-11040236:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	434.6744384765625	2	434.27417	866.533787	-0.19771	-8.5861E-05	-0.1264	-5.4891E-05	-0.32411	-0.00014075	434.27412902111564	63.68	1.628	64.42	63.936	65.564	0.74022					109	31	5	0	0	0	0.70843	1	24535	24535		32.117	0	1	278460000			32997	10379	24007	24178	32136	32136					0.09518098859598467
LRQRRARLLEL	11	Unmodified	_LRQRRARLLEL_					0	0	0			REV__ENSG00000115306|ENST00000356805|SPTBN1;REV__nc|ENSG00000115306|Q01082-2|SPTBN1	REV__ENSG00000115306|ENST00000356805|SPTBN1	MSMS	A375_MHC_IP_R2	2	475.6917419433594	3	475.303793	1422.88955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.81	1	143.83	143.33	144.33	0.024414								0	0	0	0.16358	1	56192	56192		0.08335	0	1		+		32998	17871;27186	24008	24179	32137	32137					0.19501992310688365
LRQRSPWGSQD	11	Unmodified	_LRQRSPWGSQD_					0	0	0		ENST00000394009.4_1_14:74486078-74489636:+|nuORF	ENST00000394009.4_1_14:74486078-74489636:+|nuORF	ENST00000394009.4_1_14:74486078-74489636:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	664.7733764648438	2	665.33655	1328.65855	-0.46809	-0.00031144	1.945	0.0012941	1.477	0.00098267	665.8403178393938	96.908	0.20399	96.908	96.73	96.934	0					5	3	2	0	0	0	0.99417	1	35601	35601		8.9762	4.4474	1	774220			32999	11447	24009	24180	32138	32138					0.007363195381685728
LRQYSIGPAK	10	Unmodified	_LRQYSIGPAK_					0	0	0			REV__ENSG00000141506|ENST00000447110|PIK3R5	REV__ENSG00000141506|ENST00000447110|PIK3R5	MULTI-MSMS	A375_MHC_IP_R1	1	378.6123962402344	3	378.220624	1131.64004	0.4057	0.00015344	0.082557	3.1225E-05	0.48826	0.00018467	378.22061562286643	51.072	0.55805	51.072	50.764	51.322	0					24	10	3	0	0	0	0.49952	1	18050	18050		28.234	7.6527	1	5338900	+		33000	19274	24010	24181	32139	32139					0.07948809634262943
LRRDSLPEL	9	Unmodified	_LRRDSLPEL_					0	0	0			REV__ENSG00000070601|ENST00000377765|FRMPD1	REV__ENSG00000070601|ENST00000377765|FRMPD1	MULTI-SECPEP	A375_MHC_IP_R2	2	367.5961608886719	3	366.880379	1097.61931	0.18662	6.8467E-05	-0.18002	-6.6045E-05	0.0066031	2.4226E-06	366.88026594330705	42.234	0.51076	43.007	42.707	43.218	0.7724					14	9	2	0	0	0	0.71071	1	15660	15660		14.405	4.2548	1	1223500	+		33001	16577	24011	24182	32140	32140					0.07440219254613112
LRREVSRLQ	9	Unmodified	_LRREVSRLQ_					0	0	0		nc|ENSG00000161955|O75888-5|TNFSF13;nc|ENSG00000161955|O75888-4|TNFSF13;nc|ENSG00000161955|O75888-2|TNFSF13;nc|ENSG00000161955|O75888-3|TNFSF13;ENSG00000161955|ENST00000338784|TNFSF13	nc|ENSG00000161955|O75888-5|TNFSF13	nc|ENSG00000161955|O75888-5|TNFSF13	MULTI-MSMS	A375_MHC_IP_R2	2	386.6349792480469	3	386.235156	1155.68364	-0.43763	-0.00016903	0.16025	6.1893E-05	-0.27739	-0.00010714	386.2352035777829	19.844	0.65826	20.454	19.993	20.651	0.61029					26	12	3	0	0	0	0.68705	1	6093	6093		8.1555	0	1	3030500			33002	6496	24012	24183	32141	32141					0.11202419131404895
LRRFENEEE	9	Unmodified	_LRRFENEEE_					0	0	0			REV__ENST00000466818.1_1_20:61299859-61316819:+|nuORF	REV__ENST00000466818.1_1_20:61299859-61316819:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	408.266357421875	3	407.866798	1220.57856	-0.51683	-0.0002108	0.76585	0.00031236	0.24902	0.00010157	407.8671025662805	30.442	0.65707	30.442	30.251	30.908	0					17	12	2	0	0	0	0.775	1	9677	9677		7.1017	7.1017	1	3381700	+		33003	25044	24013	24184	32142	32142					-0.022901668556642107
LRRFYERPFLD	11	Unmodified	_LRRFYERPFLD_					0	0	0			REV__KAT6A|p.E1078D|1|0.21|ENSG00000083168|chr8:41937374-41937374|T/A|missense_variant	REV__KAT6A|p.E1078D|1|0.21|ENSG00000083168|chr8:41937374-41937374|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	378.98529052734375	4	378.708397	1510.80448	0.87951	0.00033308	-0.49964	-0.00018922	0.37987	0.00014386	378.70822724900484	44.768	0.3046	44.768	44.523	44.827	0					6	5	2	0	0	0	0.73636	1	15622	15622		2.8433	0.59056	1	1966300	+		33004	26816	24014	24185	32143	32143					0.06951202054210626
LRRIRREY	8	Unmodified	_LRRIRREY_					0	0	0			REV__ENSG00000198752|ENST00000361246|CDC42BPB	REV__ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-SECPEP	A375_MHC_IP_R2	2	581.7516479492188	2	581.351806	1160.68906	-0.1492	-8.6738E-05	0.86817	0.00050471	0.71897	0.00041797	581.351663978217	149.65	1.4922	149.67	148.52	150.01	0.01825					144	57	3	0	0	0	0.972	1	58070	58070		0.69038	0.088878	1	440790	+		33005	22410	24015	24186	32144	32144					0.11514142713895126
LRRKDLIY	8	Unmodified	_LRRKDLIY_					0	0	0		IL1RAPL2|p.K348R|1|0.05|ENSG00000189108|chrX:105740686-105740686|A/G|missense_variant	IL1RAPL2|p.K348R|1|0.05|ENSG00000189108|chrX:105740686-105740686|A/G|missense_variant	IL1RAPL2|p.K348R|1|0.05|ENSG00000189108|chrX:105740686-105740686|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	359.9573059082031	3	359.557348	1075.65021	0.069472	2.4979E-05	-0.43524	-0.0001565	-0.36577	-0.00013152	359.55721806367325	58.179	0.50611	58.179	57.822	58.328	0					17	9	3	0	0	0	0.77603	1	20901	20901		10.824	2.0785	1	2283800			33006	14153	24016	24187	32145	32145					0.11541417359512707
LRRKLWRRPRR	11	Unmodified	_LRRKLWRRPRR_					0	0	0			REV__ENST00000251102.12_1_16:57965650-57974178:-|nuORF	REV__ENST00000251102.12_1_16:57965650-57974178:-|nuORF	MSMS	A375_MHC_IP_R1	1	797.011474609375	2	797.013476	1592.0124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.891	1	79.891	79.391	80.391	0								0	0	0	0.1636	1	29165	29165		0	0	1		+		33007	23123	24017	24188	32146	32146					0.24007293552585907
LRRKLWRRPRR	11	Unmodified	_LRRKLWRRPRR_					0	0	0			REV__ENST00000251102.12_1_16:57965650-57974178:-|nuORF	REV__ENST00000251102.12_1_16:57965650-57974178:-|nuORF	MSMS	A375_MHC_IP_R2	2	797.0123291015625	2	797.013476	1592.0124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.359	1	13.903	13.403	14.403	0.54443								0	0	0	0.1636	1	4097	4097		0	0	1		+		33008	23123	24017	24188	32147	32147					0.24007293552585907
LRRKPKELFKY	11	Unmodified	_LRRKPKELFKY_					0	0	0			REV__ENST00000461195.5_1_17:27071094-27074974:+|nuORF	REV__ENST00000461195.5_1_17:27071094-27074974:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	370.2767639160156	4	370.230502	1476.8929	0.31749	0.00011754	-0.1566	-5.7977E-05	0.16089	5.9568E-05	370.2305864594036	30.442	0.45468	31.161	30.962	31.417	0.71857					15	8	3	0	0	0	1.0014	1	10670	10670		0.45452	0	1	2203000	+		33009	16676	24018	24189	32148	32148					0.1735324236467477
LRRKRRRMFRR	11	Unmodified	_LRRKRRRMFRR_					0	0	0			REV__ENST00000391975.5_1_2:242194961-242195633:-|nuORF	REV__ENST00000391975.5_1_2:242194961-242195633:-|nuORF	MSMS	A375_MHC_IP_R2	2	816.0795288085938	2	816.01041	1630.00627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.105	1	80.849	80.349	81.349	0.74474								0	0	0	0.1636	1	30409	30409		0	0	1		+		33010	24267	24019	24190	32149	32149					0.216464520494128
LRRKRRWRRAR	11	Unmodified	_LRRKRRWRRAR_					0	0	0		ENSG00000224109|ENST00000417339|CENPVL3	ENSG00000224109|ENST00000417339|CENPVL3	ENSG00000224109|ENST00000417339|CENPVL3	MSMS	A375_MHC_IP_R2	2	805.515869140625	2	805.514174	1609.0138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.5484	1	2.0074	1.5074	2.5074	0.45901								0	0	0	0.1636	1	499	499		0	0	1				33011	9690	24020	24191	32150	32150					0.23364927641364375
LRRKRRWRRAR	11	Unmodified	_LRRKRRWRRAR_					0	0	0		ENSG00000224109|ENST00000417339|CENPVL3	ENSG00000224109|ENST00000417339|CENPVL3	ENSG00000224109|ENST00000417339|CENPVL3	MSMS	A375_MHC_IP_R2	2	805.5158081054688	2	805.514174	1609.0138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.0591	1	2.5181	2.0181	3.0181	0.45901								0	0	0	0.1636	1	663	663		0	0	1				33012	9690	24020	24191	32151	32151					0.23364927641364375
LRRKRRWRRAR	11	Unmodified	_LRRKRRWRRAR_					0	0	0		ENSG00000224109|ENST00000417339|CENPVL3	ENSG00000224109|ENST00000417339|CENPVL3	ENSG00000224109|ENST00000417339|CENPVL3	MSMS	A375_MHC_IP_R2	2	805.5157470703125	2	805.514174	1609.0138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.5892	1	5.0061	4.5061	5.5061	0.41691								0	0	0	0.1636	1	1476	1476		0	0	1				33013	9690	24020	24191	32152	32152					0.23364927641364375
LRRKRRWRRAR	11	Unmodified	_LRRKRRWRRAR_					0	0	0		ENSG00000224109|ENST00000417339|CENPVL3	ENSG00000224109|ENST00000417339|CENPVL3	ENSG00000224109|ENST00000417339|CENPVL3	MSMS	A375_MHC_IP_R2	2	805.5155639648438	2	805.514174	1609.0138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.0902	1	5.5072	5.0072	6.0072	0.41691								0	0	0	0.1636	1	1631	1631		0	0	1				33014	9690	24020	24191	32153	32153					0.23364927641364375
LRRKSRPLEE	10	Unmodified	_LRRKSRPLEE_					0	0	0		ENST00000321027.7_3_2:75929435-75937941:-|nuORF	ENST00000321027.7_3_2:75929435-75937941:-|nuORF	ENST00000321027.7_3_2:75929435-75937941:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	642.78125	2	642.38076	1282.74697	-0.8879	-0.00057037	3.1838	0.0020452	2.2959	0.0014748	642.38187800684	143.52	0.69177	143.52	143.24	143.94	0					19	13	3	0	0	0	0.72416	1	55137	55137		1.4819	0.28856	1	507390			33015	10695	24021	24192	32154	32154					0.11690359848671505
LRRLNFVRL	9	Unmodified	_LRRLNFVRL_					0	0	0		nc|ENSG00000102900|Q8N1F7-2|NUP93;ENSG00000102900|ENST00000308159|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	MULTI-MSMS	A375_MHC_IP_R2	2	396.65570068359375	3	396.255891	1185.74584	-0.34521	-0.00013679	0.15986	6.3347E-05	-0.18534	-7.3443E-05	396.25598413106854	26.831	0.56321	27.491	27.313	27.876	0.65992					26	10	3	0	0	0	0.65748	1	9108	9108		10.8	1.2555	1	19572000			33016	2399	24022	24193	32155	32155					0.1604019027040522
LRRLQARQL	9	Unmodified	_LRRLQARQL_					0	0	0			REV__ENST00000598168.5_2_19:50881110-50881788:+|nuORF	REV__ENST00000598168.5_2_19:50881110-50881788:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	385.64739990234375	3	385.247396	1152.72036	-0.3894	-0.00015002	0.097565	3.7587E-05	-0.29184	-0.00011243	385.2475019668479	23.728	0.30512	24.358	24.232	24.537	0.63014					11	5	3	0	0	0	0.76452	1	7713	7713		4.897	0	1	7280200	+		33017	26486	24023	24194	32156	32156					0.1501071574798516
LRRLRTRF	8	Unmodified	_LRRLRTRF_					0	0	0		ENST00000553935.5_1_14:24899298-24900051:+|nuORF;ENST00000556510.1_1_14:24899829-24900051:+|nuORF	ENST00000553935.5_1_14:24899298-24900051:+|nuORF	ENST00000553935.5_1_14:24899298-24900051:+|nuORF	MSMS	A375_MHC_IP_R1	1	373.2807922363281	3	373.240353	1116.69923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.569	1	33.569	33.069	34.069	0								0	0	0	0.16876	1	10971	10971		1.4819	0.41044	1				33018	13409	24024	24195	32157	32157					0.14554750439128838
LRRLRWYFFTR	11	Unmodified	_LRRLRWYFFTR_					0	0	0			REV__nc|ENSG00000278540|Q13085-3|ACACA	REV__nc|ENSG00000278540|Q13085-3|ACACA	MULTI-MSMS	A375_MHC_IP_R1	1	538.6947631835938	3	538.644038	1612.91028	-0.93672	-0.00050456	3.1366	0.0016895	2.1999	0.001185	538.6449885778287	134.19	0.76306	134.19	133.56	134.32	0					20	14	2	0	0	0	0.73924	2	51544	51544;51685		0.094841	0.094841	1	4122800	+		33019	22979	24025	24196	32158;32159	32158					0.12834582690311436
LRRLVLGP	8	Unmodified	_LRRLVLGP_					0	0	0		ENSG00000258429|ENST00000288022|PDF	ENSG00000258429|ENST00000288022|PDF	ENSG00000258429|ENST00000288022|PDF	MULTI-SECPEP	A375_MHC_IP_R1	1	462.7112121582031	2	462.311087	922.60762	-0.32887	-0.00015204	0.068638	3.1732E-05	-0.26023	-0.00012031	462.31118852599684	52.6	0.35741	52.6	52.438	52.796	0					9	6	2	0	0	0	0.97144	1	18742	18742		5.2307	0	1	2987900			33020	9917	24026	24197	32160	32160					0.14322067021942075
LRRPRRPRRWW	11	Unmodified	_LRRPRRPRRWW_					0	0	0		ENST00000372022.5_1_9:136199397-136199478:-|nuORF	ENST00000372022.5_1_9:136199397-136199478:-|nuORF	ENST00000372022.5_1_9:136199397-136199478:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	545.7344970703125	3	545.662426	1633.96545	-0.85836	-0.00046838	-1.0836	-0.00059129	-1.942	-0.0010597	545.6622126079494	137.53	1.5833	137.53	137.18	138.76	0					56	30	3	0	0	0	0.73924	1	53246	53246		0.094841	0.094841	1	1531200			33021	11188	24027	24198	32161	32161					0.17382434001456204
LRRPRRPRRWW	11	Unmodified	_LRRPRRPRRWW_					0	0	0		ENST00000372022.5_1_9:136199397-136199478:-|nuORF	ENST00000372022.5_1_9:136199397-136199478:-|nuORF	ENST00000372022.5_1_9:136199397-136199478:-|nuORF	MSMS	A375_MHC_IP_R2	2	545.6632690429688	3	545.662426	1633.96545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.837	1	25.481	24.981	25.981	0.64368								0	0	0	0.16358	1	8225	8225		0.08335	0.08335	1				33022	11188	24027	24198	32162	32162					0.17382434001456204
LRRQELERKFR	11	Unmodified	_LRRQELERKFR_					0	0	0		ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	MSMS	A375_MHC_IP_R2	2	765.8464965820312	2	765.952415	1529.89028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.75	1	141.78	141.28	142.28	0.030731								0	0	0	0.16358	1	55432	55432		0.30703	0	1				33023	6372	24028	24199	32163	32163					0.14652786959709374
LRRQKKWTRKE	11	Unmodified	_LRRQKKWTRKE_					0	0	0			REV__ENST00000587366.1_1_18:55280911-55288994:-|nuORF	REV__ENST00000587366.1_1_18:55280911-55288994:-|nuORF	MSMS	A375_MHC_IP_R2	2	764.7996826171875	2	764.962783	1527.91101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.16	1	127.43	126.93	127.93	0.26593								0	0	0	0.16354	1	49816	49816		0.30703	0	1		+		33024	26399	24029	24200	32164	32164					0.1681737733938462
LRRRKPKPL	9	Unmodified	_LRRRKPKPL_					0	0	0			REV__ENSG00000233232|ENST00000452313|NPIPB7	REV__ENSG00000233232|ENST00000452313|NPIPB7	MULTI-MSMS	A375_MHC_IP_R1	1	388.6236572265625	3	388.59977	1162.77748	0.028732	1.1165E-05	0.083907	3.2606E-05	0.11264	4.3772E-05	388.5998617697588	19.293	0.48709	19.293	19.238	19.725	0					14	9	2	0	0	0	0.7675	1	4663	4663		0.96228	0	1	5844500	+		33025	22198	24030	24201	32165	32165					0.2026018302437933
LRRRKRFKRQ	10	Unmodified	_LRRRKRFKRQ_					0	0	0		ENSG00000251493|ENST00000615637|FOXD1;ENSG00000186564|ENST00000334793|FOXD2	ENSG00000251493|ENST00000615637|FOXD1	ENSG00000251493|ENST00000615637|FOXD1	MSMS	A375_MHC_IP_R2	2	722.347412109375	2	722.465827	1442.9171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.99	1	112.71	112.21	113.21	0.72458								0	0	0	0.15591	1	42221	42221		1.6526	0.32309	1				33026	9853	24031	24202	32166	32166					0.21335940361564099
LRRRKRFQRH	10	Unmodified	_LRRRKRFQRH_					0	0	0		ENSG00000170122|ENST00000382500|FOXD4	ENSG00000170122|ENST00000382500|FOXD4	ENSG00000170122|ENST00000382500|FOXD4	MULTI-MSMS	A375_MHC_IP_R1	1	485.36773681640625	3	484.967627	1451.88105	-0.23064	-0.00011185	0.37815	0.00018339	0.14751	7.1539E-05	484.96782096663486	61.953	0.41037	61.953	61.686	62.097	0					20	7	3	0	0	0	0.72607	1	22349	22349		0.62683	0.62683	1	4831600			33027	7473	24032	24203	32167	32167					0.17318483184726574
LRRRKRNWVIP	11	Unmodified	_LRRRKRNWVIP_					0	0	0		CDH4|p.D170N|1|0.37|ENSG00000179242|chr20:61773114-61773114|G/A|missense_variant	CDH4|p.D170N|1|0.37|ENSG00000179242|chr20:61773114-61773114|G/A|missense_variant	CDH4|p.D170N|1|0.37|ENSG00000179242|chr20:61773114-61773114|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	747.46923828125	2	747.468035	1492.92152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.7	1	131.7	131.2	132.2	0								0	0	0	0.16358	1	50775	50775		0.30703	0	1				33028	347	24033	24204	32168	32168					0.19477404784493046
LRRRLCVWVWV	11	Unmodified	_LRRRLCVWVWV_					0	0	0			REV__ENST00000478137.1_1_7:1199695-1199887:-|nuORF	REV__ENST00000478137.1_1_7:1199695-1199887:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	496.3581848144531	3	495.958969	1484.85508	-0.40215	-0.00019945	0.024224	1.2014E-05	-0.37793	-0.00018744	495.95892408341234	133.11	1.3741	133.28	132.33	133.7	0.16487					130	26	6	0	0	0	0.73897	1	52086	52086		0.094841	0	1	265370000	+		33029	25205	24034	24205	32169	32169					0.1320445289820782
LRRRRRRARH	10	Unmodified	_LRRRRRRARH_					0	0	0		ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	MSMS	A375_MHC_IP_R2	2	717.3560791015625	2	716.956492	1431.89843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.52	1	143.54	143.04	144.04	0.024414								0	0	0	0.15642	1	56086	56086		0	0	1				33030	6979	24035	24206	32170	32170					0.1997582351039
LRRRRRRKWRE	11	Unmodified	_LRRRRRRKWRE_					0	0	0			REV__ENST00000326402.8_2_11:92930946-92931072:-|nuORF	REV__ENST00000326402.8_2_11:92930946-92931072:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	556.076171875	3	556.680368	1667.01927	-0.89249	-0.00049683	-1.8571	-0.0010338	-2.7496	-0.0015307	556.6794241620522	139.83	0.3598	139.83	139.67	140.03	0					9	6	2	0	0	0	1.0015	1	53722	53722		0	0	1	1034100	+		33031	23604	24036	24207	32171	32171					0.2124460643317434
LRRRRRVHRYE	11	Unmodified	_LRRRRRVHRYE_					0	0	0		ENSG00000112996|ENST00000507110|MRPS30	ENSG00000112996|ENST00000507110|MRPS30	ENSG00000112996|ENST00000507110|MRPS30	MULTI-SECPEP	A375_MHC_IP_R2	2	533.4049682617188	3	532.985457	1595.93454	-0.53328	-0.00028423	-0.73648	-0.00039253	-1.2698	-0.00067676	532.9848854576478	149.05	1.6827	149.07	147.9	149.58	0.018707					92	40	3	0	0	0	1.0015	1	57497	57497		0.08335	0.08335	1	366950			33032	3121	24037	24208	32172	32172					0.16041235896591388
LRRRTRRMRR	10	Unmodified	_LRRRTRRMRR_					0	0	0			REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF	REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF	MSMS	A375_MHC_IP_R1	1	728.8150024414062	2	728.952561	1455.89057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.86	1	144.86	144.36	145.36	0								0	0	0	0.15629	1	55542	55542		0.40072	0.093686	1		+		33033	24610	24038	24209	32173	32173					0.18085928198593137
LRRRTRRMRR	10	Unmodified	_LRRRTRRMRR_					0	0	0			REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF	REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF	MSMS	A375_MHC_IP_R2	2	728.8145141601562	2	728.952561	1455.89057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.91	1	144.93	144.43	145.43	0.021408								0	0	0	0.15629	1	56590	56590		0.40072	0.40072	1		+		33034	24610	24038	24209	32174	32174					0.18085928198593137
LRRSCVQQW	9	Unmodified	_LRRSCVQQW_					0	0	0			REV__ENSG00000111432|ENST00000229030|FZD10	REV__ENSG00000111432|ENST00000229030|FZD10	MSMS	A375_MHC_IP_R2	2	392.6294860839844	3	392.541592	1174.60295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.28	1	21.9	21.4	22.4	0.61932								0	0	0	0.15486	1	6687	6687		7.609	4.8738	1		+		33035	17673	24039	24210	32175	32175					0.022628148168678308
LRRSTNEEDGM	11	Unmodified	_LRRSTNEEDGM_					0	0	0			REV__ENSG00000101825|ENST00000217939|MXRA5	REV__ENSG00000101825|ENST00000217939|MXRA5	MULTI-MSMS	A375_MHC_IP_R1	1	436.9381103515625	3	436.538464	1306.59356	-0.083875	-3.6615E-05	-0.79559	-0.00034731	-0.87947	-0.00038392	436.5383080686009	54.617	1.1174	54.617	54.263	55.381	0					71	21	5	0	0	0	0.73016	1	19461	19461		4.4062	4.4062	1	96455000	+		33036	17186	24040	24211	32176	32176					-0.04747043049997046
LRRWDKLL	8	Unmodified	_LRRWDKLL_					0	0	0			REV__nc|ENSG00000138346|P51530-3|DNA2	REV__nc|ENSG00000138346|P51530-3|DNA2	MULTI-MSMS	A375_MHC_IP_R1	1	367.6280212402344	3	367.229342	1098.6662	0.39012	0.00014326	-0.7588	-0.00027866	-0.36869	-0.00013539	367.2278980058618	20.545	0.76493	20.545	20.232	20.997	0					40	14	6	0	0	0	0.77675	1	5324	5324		6.7232	0.53132	1	2159700	+		33037	19086	24041	24212	32177	32177					0.12081123596408361
LRRWLLER	8	Unmodified	_LRRWLLER_					0	0	0			REV__ENST00000406213.1_1_22:24237237-24238205:-|nuORF	REV__ENST00000406213.1_1_22:24237237-24238205:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	381.6365966796875	3	381.236608	1140.688	0.32155	0.00012259	0.42291	0.00016123	0.74446	0.00028381	381.23676002146055	23.169	0.55804	23.169	22.873	23.432	0					16	10	2	0	0	0	0.75801	1	6350	6350		18.146	0	1	2725000	+		33038	24444	24042	24213	32178	32178					0.12327928344984684
LRSAVGEGEVM	11	Unmodified	_LRSAVGEGEVM_					0	0	0			REV__ANK3|p.L1042V|1|0.58|ENSG00000151150|chr10:60108879-60108879|A/C|missense_variant	REV__ANK3|p.L1042V|1|0.58|ENSG00000151150|chr10:60108879-60108879|A/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	383.57122802734375	3	383.197379	1146.57031	-0.43455	-0.00016652	1.4696	0.00056315	1.035	0.00039663	383.5321109246819	36.424	0.66039	37.194	37.005	37.665	0.7709					31	12	3	0	0	0	0.73078	1	13412	13412		4.1166	0	1	1977500	+		33039	15404	24043	24214	32179	32179					0.0028856290334715595
LRSDIQKRL	9	Unmodified	_LRSDIQKRL_					0	0	0		nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6	nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-4|BAG6	MULTI-MSMS	A375_MHC_IP_R1	1	377.2995910644531	3	376.899773	1127.67749	0.31719	0.00011955	-0.30544	-0.00011512	0.011747	4.4274E-06	376.8996339979377	23.216	0.45645	23.216	22.924	23.381	0					22	8	4	0	0	0	0.038567	1	6328	6328		68.76	11.511	1	7431200			33040	9446	24044	24215	32180	32180					0.11875900899894987
LRSDIQKRL	9	Unmodified	_LRSDIQKRL_					0	0	0		nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6	nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-4|BAG6	MULTI-MSMS	A375_MHC_IP_R2	2	377.29974365234375	3	376.899773	1127.67749	-0.12219	-4.6054E-05	0.16633	6.2689E-05	0.044135	1.6635E-05	376.8998042288578	20.709	0.70957	21.319	21.109	21.819	0.61029					25	13	2	0	0	0	0.10518	1	6462	6462		49.742	11.127	1	2719300			33041	9446	24044	24215	32181	32181					0.11875900899894987
LRSDLEAKVQF	11	Unmodified	_LRSDLEAKVQF_					0	0	0			REV__ENST00000489419.1_1_1:34066375-34068054:-|nuORF	REV__ENST00000489419.1_1_1:34066375-34068054:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	436.3101806640625	3	435.910227	1304.70885	-0.3807	-0.00016595	0.18543	8.0831E-05	-0.19526	-8.5117E-05	435.9102746280737	36.472	0.66092	36.472	36.184	36.845	0					22	12	3	0	0	0	0.66366	1	12227	12227		11.065	0.53781	1	2976600	+		33042	25371	24045	24216	32182	32182					0.06868429143310095
LRSDLEAKVQF	11	Unmodified	_LRSDLEAKVQF_					0	0	0			REV__ENST00000489419.1_1_1:34066375-34068054:-|nuORF	REV__ENST00000489419.1_1_1:34066375-34068054:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	435.910227	1304.70885	-0.3807	-0.00016595	0.18543	8.0831E-05	-0.19526	-8.5117E-05	435.9102746280737	36.472	0.66092	36.472	36.184	36.845	0	0.09488	-5.4071E-05	NaN	11.065	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2976600	+		33043	25371	24045	24216							0.06868429143310095
LRSERLIRT	9	Unmodified	_LRSERLIRT_					0	0	0		ENSG00000113645|ENST00000265293|WWC1;nc|ENSG00000113645|Q8IX03-2|WWC1	ENSG00000113645|ENST00000265293|WWC1	ENSG00000113645|ENST00000265293|WWC1	MULTI-MSMS	A375_MHC_IP_R1	1	381.90045166015625	3	381.903406	1142.68839	0.46504	0.0001776	1.1508	0.0004395	1.6158	0.0006171	381.9041173981444	23.13	0.6574	23.13	22.723	23.381	0					17	12	2	0	0	0	0.70411	1	6326	6326		6.6304	2.1015	1	1827800			33044	3171	24046	24217	32183	32183					0.12275303274168436
LRSLVIAGIK	10	Unmodified	_LRSLVIAGIK_					0	0	0		LRRN3|p.N223K|1|0.15|ENSG00000173114|chr7:111123441-111123441|C/A|missense_variant	LRRN3|p.N223K|1|0.15|ENSG00000173114|chr7:111123441-111123441|C/A|missense_variant	LRRN3|p.N223K|1|0.15|ENSG00000173114|chr7:111123441-111123441|C/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	357.6411437988281	3	357.241248	1068.70191	-0.24744	-8.8395E-05	0.32436	0.00011588	0.076923	2.748E-05	357.24126535246813	36.575	0.45638	36.575	36.339	36.795	0					21	8	3	0	0	0	0.62871	1	12277	12277		18.721	1.2786	1	4314300			33045	14322	24047	24218	32184	32184					0.17031161053387223
LRSQLEHEL	9	Unmodified	_LRSQLEHEL_					0	0	0			REV__ENSG00000198925|ENST00000361242|ATG9A	REV__ENSG00000198925|ENST00000361242|ATG9A	MULTI-MSMS	A375_MHC_IP_R1	1	376.2648620605469	3	375.540134	1123.59857	0.84495	0.00031731	-0.57168	-0.00021469	0.27327	0.00010262	375.53986481210114	49.09	0.55672	49.09	48.831	49.387	0					20	10	3	0	0	0	0.69317	1	17298	17298		7.609	0.88579	1	2246000	+		33046	22450	24048	24219	32185	32185					0.04171628874951239
LRSRLSHTL	9	Unmodified	_LRSRLSHTL_					0	0	0			REV__ENST00000517635.2_1_7:27161701-27161977:+|nuORF	REV__ENST00000517635.2_1_7:27161701-27161977:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	361.9294128417969	3	361.552485	1081.63563	-0.46704	-0.00016886	-0.71545	-0.00025867	-1.1825	-0.00042753	361.55243693128807	19.267	0.75872	19.87	19.633	20.392	0.60308					35	14	3	0	0	0	0.17338	1	5942	5942		30.703	9.1133	1	4819000	+		33047	25671	24049	24220	32186	32186					0.0980734521137947
LRTDKGPG	8	Unmodified	_LRTDKGPG_					0	0	0			REV__ENST00000396912.1_1_7:5085823-5085919:+|nuORF	REV__ENST00000396912.1_1_7:5085823-5085919:+|nuORF	MSMS	A375_MHC_IP_R1	1	422.2685852050781	2	422.237784	842.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.149	1	46.149	45.649	46.649	0								0	0	0	0.16876	1	16177	16177		23.148	6.2061	1		+		33048	24349	24050	24221	32187	32187					0.033483450661947245
LRTKALKFF	9	Unmodified	_LRTKALKFF_					0	0	0		ENST00000392952.7_1_10:116194103-116194352:-|nuORF	ENST00000392952.7_1_10:116194103-116194352:-|nuORF	ENST00000392952.7_1_10:116194103-116194352:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	375.27655029296875	3	375.237726	1122.69135	0.24024	9.0149E-05	0.47301	0.00017749	0.71326	0.00026764	375.23793703327476	32.756	0.45779	33.493	33.213	33.671	0.73692					11	8	2	0	0	0	0.58268	1	11641	11641		15.739	15.739	1	1486700			33049	11431	24051	24222	32188	32188					0.13491178398976444
LRTSSTVTSV	10	Unmodified	_LRTSSTVTSV_					0	0	0		ENST00000431015.5_2_3:46722577-46730936:-|nuORF	ENST00000431015.5_2_3:46722577-46730936:-|nuORF	ENST00000431015.5_2_3:46722577-46730936:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	526.1781005859375	2	525.793121	1049.57169	-0.37612	-0.00019776	-1.1251	-0.00059158	-1.5012	-0.00078934	526.2929595007328	56.208	1.6267	56.208	55.381	57.007	0					73	31	4	0	0	0	0.55307	1	20161	20161		29.841	10.584	1	23551000			33050	11864	24052	24223	32189	32189					0.04888520263762075
LRTSTPNL	8	Unmodified	_LRTSTPNL_					0	0	0		ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	MULTI-MSMS	A375_MHC_IP_R2	2	901.4124145507812	1	901.510157	900.50288	-0.31554	-0.00028446	-0.75933	-0.00068455	-1.0749	-0.00096901	901.5094304269878	68.939	0.25436	69.674	69.525	69.779	0.73512					6	4	2	0	0	0	0.77804	1	26144	26144		2.0598	0	1	876330			33051	5402	24053	24224	32190	32190					0.0486490075469419
LRTTVTETV	9	Unmodified	_LRTTVTETV_					0	0	0			REV__COL17A1|p.G909Rfs*56|1|0.35|ENSG00000065618|chr10:104040388-104040389|-/G|frameshift_variant	REV__COL17A1|p.G909Rfs*56|1|0.35|ENSG00000065618|chr10:104040388-104040389|-/G|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	511.0338439941406	2	510.290214	1018.56587	-0.5573	-0.00028439	3.0312	0.0015468	2.4739	0.0012624	510.291635950174	143.29	0.15199	143.31	143.18	143.34	0.024414					4	2	2	0	0	0	0.80005	1	55996	55996		2.0598	0	1	962820	+		33052	15823	24054	24225	32191	32191					0.05733421752097456
LRVAYCYSM	9	Unmodified	_LRVAYCYSM_					0	0	0			REV__LSS|p.A250V|1|0.19|ENSG00000160285|chr21:46216423-46216423|G/A|missense_variant	REV__LSS|p.A250V|1|0.19|ENSG00000160285|chr21:46216423-46216423|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	553.2296142578125	2	553.262087	1104.50962	-0.56047	-0.00031009	-0.68644	-0.00037978	-1.2469	-0.00068987	553.2618867920572	52.383	0.40483	52.383	52.085	52.49	0					11	7	2	0	0	0	0.64808	1	18639	18639		11.64	0.81637	1	1727100	+		33053	20158	24055	24226	32192	32192					-0.038452456805998736
LRVAYCYSM	9	Unmodified	_LRVAYCYSM_					0	0	0			REV__LSS|p.A250V|1|0.19|ENSG00000160285|chr21:46216423-46216423|G/A|missense_variant	REV__LSS|p.A250V|1|0.19|ENSG00000160285|chr21:46216423-46216423|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	553.262087	1104.50962	-1.0473	-0.00057946	-0.70563	-0.0003904	-1.753	-0.00096986	553.26187332154	51.71	0.25406	52.463	52.372	52.626	0.75225	0.039617	-1.5336E-05	NaN	11.64	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1605000	+		33054	20158	24055	24226							-0.038452456805998736
LRVDPVNFK	9	Unmodified	_LRVDPVNFK_					0	0	0		CON__P01966;ENSG00000130656|ENST00000252951|HBZ;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;ENST00000487791.1_1_16:226802-227261:+|nuORF	CON__P01966;ENSG00000206172|ENST00000320868|HBA1	CON__P01966	MULTI-MSMS	A375_MHC_IP_R1	1	363.61309814453125	3	363.213469	1086.61858	0.075083	2.7271E-05	-0.44792	-0.00016269	-0.37284	-0.00013542	363.21325863163594	46.641	0.50615	46.641	46.395	46.901	0					26	9	4	0	0	0	0.020087	1	16372	16372		68.76	48.179	1	11124000		+	33055	579;8913	24056	24227	32193	32193					0.07873424605554646
LRVDPVNFK	9	Unmodified	_LRVDPVNFK_					0	0	0		CON__P01966;ENSG00000130656|ENST00000252951|HBZ;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;ENST00000487791.1_1_16:226802-227261:+|nuORF	CON__P01966;ENSG00000206172|ENST00000320868|HBA1	CON__P01966	MULTI-SECPEP	A375_MHC_IP_R1	1	544.716064453125	2	544.316566	1086.61858	-0.68297	-0.00037175	-0.066637	-3.6272E-05	-0.74961	-0.00040802	544.3164908236452	46.673	0.45654	46.673	46.444	46.901	0					14	8	2	0	0	0	0.69381	1	16388	16388		20.415	14.209	1	3774300		+	33056	579;8913	24056	24227	32194	32194					0.07873424605554646
LRVDPVNFK	9	Unmodified	_LRVDPVNFK_					0	0	0		CON__P01966;ENSG00000130656|ENST00000252951|HBZ;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;ENST00000487791.1_1_16:226802-227261:+|nuORF	CON__P01966;ENSG00000206172|ENST00000320868|HBA1	CON__P01966	MULTI-MSMS	A375_MHC_IP_R2	2	363.61334228515625	3	363.213469	1086.61858	-0.07066	-2.5665E-05	-0.29568	-0.00010739	-0.36634	-0.00013306	363.213309918729	45.762	0.55304	46.527	46.252	46.805	0.76519					25	10	3	0	0	0	0.024574	1	17103	17103		64.927	47.484	1	12866000		+	33057	579;8913	24056	24227	32195	32195					0.07873424605554646
LRVDPVNFK	9	Unmodified	_LRVDPVNFK_					0	0	0		CON__P01966;ENSG00000130656|ENST00000252951|HBZ;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;ENST00000487791.1_1_16:226802-227261:+|nuORF	CON__P01966;ENSG00000206172|ENST00000320868|HBA1	CON__P01966	MULTI-SECPEP	A375_MHC_IP_R2	2	544.7158813476562	2	544.316566	1086.61858	-0.7929	-0.00043159	-0.061867	-3.3675E-05	-0.85476	-0.00046526	544.3164817672674	45.777	0.45197	46.542	46.353	46.805	0.76519					14	8	2	0	0	0	0.57304	1	17137	17137		23.79	17.584	1	2891000		+	33058	579;8913	24056	24227	32196	32196					0.07873424605554646
LRVEFPGTY	9	Unmodified	_LRVEFPGTY_					0	0	0		SRSF9|p.R88G|1|0.5|ENSG00000111786|chr12:120465714-120465714|T/C|missense_variant	SRSF9|p.R88G|1|0.5|ENSG00000111786|chr12:120465714-120465714|T/C|missense_variant	SRSF9|p.R88G|1|0.5|ENSG00000111786|chr12:120465714-120465714|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	541.6875	2	541.287474	1080.5604	-0.75116	-0.0004066	0.16469	8.9143E-05	-0.58648	-0.00031745	541.2874439925026	47.018	0.71873	47.018	46.647	47.366	0					31	13	4	0	0	0	0.51106	1	16483	16483		19.257	4.4187	1	6801900			33059	29251	24057	24228	32197	32197					0.023337429602861448
LRVGRVLS	8	Unmodified	_LRVGRVLS_					0	0	0			REV__ENSG00000160867|ENST00000292408|FGFR4	REV__ENSG00000160867|ENST00000292408|FGFR4	MULTI-MSMS	A375_MHC_IP_R1	1	450.69268798828125	2	450.292894	898.571235	-0.018137	-8.1669E-06	-0.21653	-9.7502E-05	-0.23467	-0.00010567	450.29278820268667	37.275	0.45982	37.275	37.045	37.505	0					18	8	3	0	0	0	0.74945	1	12541	12541		20.454	4.6064	1	5358800	+		33060	20187	24058	24229	32198	32198					0.11789190125227833
LRVGRVLS	8	Unmodified	_LRVGRVLS_					0	0	0			REV__ENSG00000160867|ENST00000292408|FGFR4	REV__ENSG00000160867|ENST00000292408|FGFR4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	450.292894	898.571235	-0.018137	-8.1669E-06	-0.21653	-9.7502E-05	-0.23467	-0.00010567	450.29278820268667	37.275	0.45982	37.275	37.045	37.505	0	0.18987	-0.00014243	NaN	20.454	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5358800	+		33061	20187	24058	24229							0.11789190125227833
LRVKIKEEHLA	11	Unmodified	_LRVKIKEEHLA_					0	0	0		nc|ENSG00000152582|Q9C093-2|SPEF2;ENSG00000152582|ENST00000356031|SPEF2	nc|ENSG00000152582|Q9C093-2|SPEF2	nc|ENSG00000152582|Q9C093-2|SPEF2	MSMS	A375_MHC_IP_R1	1	668.41064453125	2	668.408986	1334.80342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.115	1	95.115	94.615	95.615	0								0	0	0	0.16334	1	34959	34959		1.3295	0.13619	1				33062	5974	24059	24230	32199	32199					0.14940987685304208
LRVLLNIMY	9	Unmodified	_LRVLLNIMY_					0	0	0		ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1;ENST00000473429.5_1_1:110584140-110584332:+|nuORF	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	567.1666259765625	2	567.83882	1133.66309	-0.36349	-0.00020641	-4.0315	-0.0022892	-4.395	-0.0024956	568.3396533219197	81.359	0.20174	81.359	81.253	81.455	0					5	3	2	0	0	0	0.69504	1	29729	29729		18.135	6.4947	1	507770			33063	5344	24060	24231	32200	32200					0.10160112427388412
LRVRKHILA	9	Unmodified	_LRVRKHILA_					0	0	0			REV__ENST00000378062.5_1_X:43808665-43809031:-|nuORF	REV__ENST00000378062.5_1_X:43808665-43809031:-|nuORF	MSMS	A375_MHC_IP_R1	1	369.62725830078125	3	369.248737	1104.72438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.742	1	96.742	96.242	97.242	0								0	0	0	0.15486	1	35550	35550		1.1933	0.92432	1		+		33064	24172	24061	24232	32201	32201					0.176208052416996
LRVRKVQFPI	10	Unmodified	_LRVRKVQFPI_					0	0	0			REV__ENST00000509330.5_1_6:64394512-64394560:+|nuORF	REV__ENST00000509330.5_1_6:64394512-64394560:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	628.8028564453125	2	628.403507	1254.79246	-0.63099	-0.00039652	-0.56833	-0.00035714	-1.1993	-0.00075366	628.4031947519685	143.51	2.4724	143.53	142.47	144.95	0.024429					71	51	2	0	0	0	0.72712	1	56497	56497		0.45834	0.45834	1	807550	+		33065	25594	24062	24233	32202	32202					0.17525630101704337
LRVSLRGV	8	Unmodified	_LRVSLRGV_					0	0	0			REV__tr|U7SM31|U7SM31_FUSNULipoprotein-releasingsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02063PE=3SV=1	REV__tr|U7SM31|U7SM31_FUSNULipoprotein-releasingsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02063PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	450.6927185058594	2	450.292894	898.571235	-0.41372	-0.00018629	0.13938	6.2764E-05	-0.27433	-0.00012353	450.29290443475304	36.124	0.46027	36.895	36.646	37.106	0.7709					13	8	2	0	0	0	0.972	1	13140	13140		7.9102	0	1	3774100	+		33066	28287	24063	24234	32203	32203					0.11789190125239202
LRWAQELRQRI	11	Unmodified	_LRWAQELRQRI_					0	0	0		DNAH9|p.S4145Ffs*44|1|0.38|ENSG00000007174|chr17:11934016-11934016|C/-|frameshift_variant;nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;DNAH9|p.C946Lfs*2|1|0.58|ENSG00000007174|chr17:11669157-11669158|-/G|frameshift_variant	DNAH9|p.S4145Ffs*44|1|0.38|ENSG00000007174|chr17:11934016-11934016|C/-|frameshift_variant	DNAH9|p.S4145Ffs*44|1|0.38|ENSG00000007174|chr17:11934016-11934016|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	368.587158203125	4	367.967843	1467.84226	0.074711	2.7491E-05	4.4124	0.0016236	4.4871	0.0016511	367.9687283477035	19.259	0.19848	19.259	19.221	19.42	0					7	5	2	0	0	0	0.99994	1	4646	4646		3.5927	2.4829	1	21397000			33067	776	24064	24235	32204	32204					0.12705713039690636
LRWHHRVP	8	Unmodified	_LRWHHRVP_					0	0	0		nc|ENSG00000204682|Q5T4H9|MIR1915HG	nc|ENSG00000204682|Q5T4H9|MIR1915HG	nc|ENSG00000204682|Q5T4H9|MIR1915HG	MULTI-SECPEP	A375_MHC_IP_R1	1	367.629150390625	3	367.545665	1099.61517	0.3289	0.00012089	-0.81848	-0.00030083	-0.48958	-0.00017994	367.87951157488095	47.558	0.40263	47.558	47.366	47.768	0					17	7	4	0	0	0	0.972	1	16674	16674		6.2058	0	1	1545600			33068	14863	24065	24236	32205	32205					0.06934219342224424
LRWLRNWQKSF	11	Unmodified	_LRWLRNWQKSF_					0	0	0		RFC1|p.S622F|1|0.45|ENSG00000035928|chr4:39308656-39308656|G/A|missense_variant	RFC1|p.S622F|1|0.45|ENSG00000035928|chr4:39308656-39308656|G/A|missense_variant	RFC1|p.S622F|1|0.45|ENSG00000035928|chr4:39308656-39308656|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	767.5028686523438	2	767.425502	1532.83645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.256	1	92.256	91.756	92.756	0								0	0	0	0.16307	1	33903	33903		2.7352	1.4057	1				33069	29065	24066	24237	32206	32206					0.09134614528011298
LRWQRWQRRRQ	11	Unmodified	_LRWQRWQRRRQ_					0	0	0		ENSG00000167895|ENST00000318430|TMC8	ENSG00000167895|ENST00000318430|TMC8	ENSG00000167895|ENST00000318430|TMC8	MULTI-SECPEP	A375_MHC_IP_R1	1	556.6885986328125	3	556.985457	1667.93454	-0.48616	-0.00027079	-2.952	-0.0016442	-3.4382	-0.001915	556.9841028127279	101.32	0.15263	101.32	101.19	101.34	0					4	2	2	0	0	0	1.0014	1	37242	37242		0.50596	0.50596	1	1090600			33070	7234	24067	24238	32207	32207					0.12729235896563296
LRWRKRRWEW	10	Unmodified	_LRWRKRRWEW_					0	0	0		ENST00000456291.1_3_9:123638279-123638699:-|nuORF	ENST00000456291.1_3_9:123638279-123638699:-|nuORF	ENST00000456291.1_3_9:123638279-123638699:-|nuORF	MSMS	A375_MHC_IP_R2	2	524.6840209960938	3	524.632132	1570.87457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.29	1	102.05	101.55	102.55	0.76428								0	0	0	0.1562	1	38393	38393		0.69767	0.2894	1				33071	12129	24068	24239	32208	32208					0.11196545233315192
LRYASLRRF	9	Unmodified	_LRYASLRRF_					0	0	0			REV__ENSG00000185219|ENST00000396077|ZNF445	REV__ENSG00000185219|ENST00000396077|ZNF445	MULTI-SECPEP	A375_MHC_IP_R1	1	591.7586059570312	2	591.348732	1180.68291	-0.69157	-0.00040896	-0.79543	-0.00047038	-1.487	-0.00087934	591.3481193593401	142.93	0.85835	142.93	142.38	143.24	0					57	16	5	0	0	0	0.80718	1	54932	54932		3.5965	2.267	1	16386000	+		33072	21878	24069	24240	32209	32209					0.09979624482366489
LRYDHQQRL	9	Unmodified	_LRYDHQQRL_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-MSMS	A375_MHC_IP_R1	1	410.95831298828125	3	410.223028	1227.64725	0.012101	4.9641E-06	0.55583	0.00022802	0.56793	0.00023298	410.22304446002386	20.048	0.71122	20.048	19.623	20.334	0					44	13	4	0	0	0	0.048392	2	5040	5040;5142		64.927	20.945	1	19231000			33073	1500	24070	24241	32210;32211	32210					0.04253542234710039
LRYDHQQRL	9	Unmodified	_LRYDHQQRL_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-SECPEP	A375_MHC_IP_R1	1	410.95745849609375	3	410.223028	1227.64725	0.35843	0.00014703	0.2401	9.8496E-05	0.59853	0.00024553	410.22294903747564	22.216	0.35508	22.216	21.962	22.317	0					8	6	2	0	0	0	0.75214	1	5962	5962		15.739	4.2207	1	1288000			33074	1500	24070	24241	32212	32212					0.04253542234710039
LRYDHQQRL	9	Unmodified	_LRYDHQQRL_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-MSMS	A375_MHC_IP_R2	2	410.9577941894531	3	410.223028	1227.64725	-0.25344	-0.00010397	-0.0091245	-3.7431E-06	-0.26257	-0.00010771	410.22288857475303	19.005	0.41046	19.608	19.423	19.833	0.60308					26	9	4	0	0	0	0.068433	1	5772	5772		57.108	26.404	1	27564000			33075	1500	24070	24241	32213	32213					0.04253542234710039
LRYDHQQRL	9	Unmodified	_LRYDHQQRL_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-MATCH	A375_MHC_IP_R2	2		3	410.223028	1227.64725	-0.32456	-0.00013314	-0.042216	-1.7318E-05	-0.36678	-0.00015046	410.2228908070903	21.669	0.25521	22.289	22.184	22.439	0.61932	0.036157	-8.6572E-05	NaN	15.739	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	859000			33076	1500	24070	24241							0.04253542234710039
LRYDLLWKTWY	11	Unmodified	_LRYDLLWKTWY_					0	0	0		USH2A|p.G3142R|1|0.37|ENSG00000042781|chr1:215817143-215817143|C/T|missense_variant	USH2A|p.G3142R|1|0.37|ENSG00000042781|chr1:215817143-215817143|C/T|missense_variant	USH2A|p.G3142R|1|0.37|ENSG00000042781|chr1:215817143-215817143|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	519.6657104492188	3	519.613522	1555.81874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.654	1	43.427	42.927	43.927	0.7724								0	0	0	0.16332	1	15869	15869		1.4551	0.94916	1				33077	30122	24071	24242	32214	32214					0.06305854482502582
LRYHGRLFPP	10	Unmodified	_LRYHGRLFPP_					0	0	0			REV__CHST5|p.R289H|1|0.29|ENSG00000135702|chr16:75529519-75529519|C/T|missense_variant	REV__CHST5|p.R289H|1|0.29|ENSG00000135702|chr16:75529519-75529519|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	627.9542846679688	2	628.356557	1254.69856	-0.56489	-0.00035495	-2.6008	-0.0016342	-3.1657	-0.0019892	628.3574137074105	94.758	0.30276	95.503	95.375	95.678	0.74474					6	5	2	0	0	0	0.93194	1	36031	36031		9.3831	7.7305	1	606910	+		33078	15789	24072	24243	32215	32215					0.08139910999398126
LRYKKLERP	9	Unmodified	_LRYKKLERP_					0	0	0			REV__ENSG00000167011|ENST00000300303|NAT16	REV__ENSG00000167011|ENST00000300303|NAT16	MULTI-MSMS	A375_MHC_IP_R2	2	401.9833679199219	3	401.583785	1201.72953	0.10948	4.3965E-05	-0.86857	-0.0003488	-0.75909	-0.00030484	401.58336561128954	117.5	0.40364	118.16	117.94	118.34	0.65962					16	7	3	0	0	0	0.69317	1	44501	44501		7.609	4.8738	1	19303000	+		33079	15768	24073	24244	32216	32216					0.1367306431363886
LRYKNCRRFWN	11	Unmodified	_LRYKNCRRFWN_					0	0	0		nc|ENSG00000170791|Q9BUK0-4|CHCHD7;ENSG00000170791|ENST00000355315|CHCHD7;nc|ENSG00000170791|Q9BUK0-2|CHCHD7	nc|ENSG00000170791|Q9BUK0-4|CHCHD7	nc|ENSG00000170791|Q9BUK0-4|CHCHD7	MULTI-MSMS	A375_MHC_IP_R1	1	778.806640625	2	778.406786	1554.79902	-0.23819	-0.00018541	0.039142	3.0468E-05	-0.19905	-0.00015494	778.4067326291777	49.836	0.35642	49.836	49.591	49.947	0					14	6	3	0	0	0	0.73672	1	17626	17626		2.4985	1.3051	1	2404200			33080	14765	24074	24245	32217	32217					0.04381199990757523
LRYPMAVGL	9	Unmodified	_LRYPMAVGL_					0	0	0		ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-MSMS	A375_MHC_IP_R1	1	510.68878173828125	2	510.288963	1018.56337	-0.55883	-0.00028516	-1.3931	-0.0007109	-1.952	-0.00099606	510.2890744155394	83.861	0.85867	83.861	83.583	84.442	0					40	16	4	0	0	0	0.25276	1	30680	30680		34.102	10.954	1	7954200			33081	4232	24075	24246	32218	32218					0.05483294813438988
LRYPMAVGL	9	Unmodified	_LRYPMAVGL_					0	0	0		ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-SECPEP	A375_MHC_IP_R2	2	510.6889953613281	2	510.288963	1018.56337	-0.74022	-0.00037772	-1.1739	-0.00059905	-1.9142	-0.00097678	510.28899007588154	82.986	0.8603	83.725	83.393	84.254	0.73962					48	16	4	0	0	0	0.28475	1	31480	31480		48.346	25.197	1	5802800			33082	4232	24075	24246	32219	32219					0.05483294813438988
LRYPQIVPVG	10	Unmodified	_LRYPQIVPVG_					0	0	0			REV__ENST00000578759.1_1_17:60214444-60217453:-|nuORF	REV__ENST00000578759.1_1_17:60214444-60217453:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	380.6050720214844	3	381.229119	1140.66553	0.53829	0.00020521	-0.096243	-3.6691E-05	0.44205	0.00016852	381.2290443959421	54.181	0.7072	54.181	53.809	54.516	0					16	13	2	0	0	0	0.92351	1	19423	19423		9.544	9.544	1	837950	+		33083	17025	24076	24247	32220	32220					0.10082284156692367
LRYRFPRFERN	11	Unmodified	_LRYRFPRFERN_					0	0	0			REV__nc|ENSG00000058729|Q9BVS4-2|RIOK2	REV__nc|ENSG00000058729|Q9BVS4-2|RIOK2	MSMS	A375_MHC_IP_R1	1	518.6536254882812	3	518.619781	1552.83751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.661	1	86.661	86.161	87.161	0								0	0	0	0.16334	1	31781	31781		1.3296	0.11481	1		+		33084	27107	24077	24248	32221	32221					0.08320828896944477
LRYRGTRW	8	Unmodified	_LRYRGTRW_					0	0	0			REV__ENSG00000148154|ENST00000374279|UGCG	REV__ENSG00000148154|ENST00000374279|UGCG	MULTI-SECPEP	A375_MHC_IP_R2	2	370.2767639160156	3	369.877192	1106.60975	0.26487	9.797E-05	-2.227	-0.00082372	-1.9621	-0.00072575	369.8765175850127	30.344	0.60877	31.062	30.708	31.317	0.71857					17	11	2	0	0	0	0.972	1	10670	10670		5.7319	3.4491	1	1902200	+		33085	19616	24078	24249	32222	32222					0.06070495759763617
LRYRGTRW	8	Unmodified	_LRYRGTRW_					0	0	0			REV__ENSG00000148154|ENST00000374279|UGCG	REV__ENSG00000148154|ENST00000374279|UGCG	MULTI-MATCH	A375_MHC_IP_R1	1		3	369.877192	1106.60975	0.17416	6.4419E-05	-1.6106	-0.00059574	-1.4365	-0.00053132	370.210852302916	31.062	0.40463	31.062	30.959	31.363	0	5.753E-06	0.00011588	NaN	5.7319	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1666600	+		33086	19616	24078	24249							0.06070495759763617
LRYRRLVRLEH	11	Unmodified	_LRYRRLVRLEH_					0	0	0			REV__ENSG00000177971|ENST00000403490|IMP3	REV__ENSG00000177971|ENST00000403490|IMP3	MSMS	A375_MHC_IP_R1	1	755.9024658203125	2	755.957501	1509.90045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.99	1	115.99	115.49	116.49	0								0	0	0	0.16353	1	42541	42541		0.35063	0.043601	1		+		33087	21477	24079	24250	32223	32223					0.16589394685001935
LRYRRLVRLEH	11	Unmodified	_LRYRRLVRLEH_					0	0	0			REV__ENSG00000177971|ENST00000403490|IMP3	REV__ENSG00000177971|ENST00000403490|IMP3	MSMS	A375_MHC_IP_R2	2	755.9990844726562	2	755.957501	1509.90045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.01	1	115.7	115.2	116.2	0.68999								0	0	0	0.16353	1	43355	43355		0.35063	0.043601	1		+		33088	21477	24079	24250	32224	32224					0.16589394685001935
LSAAAKAR	8	Unmodified	_LSAAAKAR_					0	0	0			REV__ENSG00000076826|ENST00000160298|CAMSAP3	REV__ENSG00000076826|ENST00000160298|CAMSAP3	MULTI-MSMS	A375_MHC_IP_R2	2	394.642822265625	2	394.24287	786.471186	-0.08589	-3.3862E-05	0.13607	5.3644E-05	0.050179	1.9783E-05	394.24283736498677	48.146	0.50206	48.908	48.733	49.235	0.76128					14	9	2	0	0	0	0.77741	1	18108	18108		4.3292	0	1	1633900	+		33089	16681	24080	24251	32225	32225					0.06940952791410382
LSAARDPTLL	10	Unmodified	_LSAARDPTLL_					0	0	0		nc|ENSG00000064787|O75363|BCAS1;nc|ENSG00000064787|O75363-2|BCAS1;ENSG00000064787|ENST00000688948|BCAS1	nc|ENSG00000064787|O75363|BCAS1	nc|ENSG00000064787|O75363|BCAS1	MULTI-SECPEP	A375_MHC_IP_R1	1	529.2057495117188	2	528.806031	1055.59751	-0.66088	-0.00034948	-0.077373	-4.0915E-05	-0.73825	-0.00039039	528.8059502344382	32.193	0.96622	32.193	31.718	32.684	0					51	18	4	0	0	0	0.24526	1	10343	10343		67.081	19.486	1	23565000			33090	1360	24081	24252	32226	32226					0.07193414506036788
LSACLMVYL	9	Unmodified	_LSACLMVYL_					0	0	0			REV__ENSG00000162526|ENST00000373534|TSSK3	REV__ENSG00000162526|ENST00000373534|TSSK3	MSMS	A375_MHC_IP_R2	2	506.7187805175781	2	506.763932	1011.51331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.108	1	70.842	70.342	71.342	0.73421								0	0	0	0.15486	1	26576	26576		12.532	0.89125	1		+		33091	20264	24082	24253	32227	32227					0.008014240932652683
LSADPRSVY	9	Unmodified	_LSADPRSVY_					0	0	0		ENSG00000136932|ENST00000375119|TRMO	ENSG00000136932|ENST00000375119|TRMO	ENSG00000136932|ENST00000375119|TRMO	MULTI-MSMS	A375_MHC_IP_R1	1	504.6611328125	2	504.261456	1006.50836	-0.37638	-0.00018979	-0.05205	-2.6247E-05	-0.42843	-0.00021604	504.2614119413992	43.874	0.71369	43.874	43.451	44.165	0					33	13	3	0	0	0	0.04699	1	15204	15204		65.474	29.347	1	16275000			33092	4842	24083	24254	32228	32228					0.005365795465195333
LSADPRSVY	9	Unmodified	_LSADPRSVY_					0	0	0		ENSG00000136932|ENST00000375119|TRMO	ENSG00000136932|ENST00000375119|TRMO	ENSG00000136932|ENST00000375119|TRMO	MULTI-SECPEP	A375_MHC_IP_R2	2	504.66107177734375	2	504.261456	1006.50836	-0.56727	-0.00028605	-0.20432	-0.00010303	-0.77159	-0.00038908	504.26129136051117	43.162	0.75966	43.935	43.573	44.333	0.7724					44	14	5	0	0	0	0.062502	1	16010	16010		74.2	39.798	1	11769000			33093	4842	24083	24254	32229	32229					0.005365795465195333
LSAEELEDWL	10	Unmodified	_LSAEELEDWL_					0	0	0		CASQ1|p.P368L|1|0.5|ENSG00000143318|chr1:160201288-160201288|C/T|missense_variant	CASQ1|p.P368L|1|0.5|ENSG00000143318|chr1:160201288-160201288|C/T|missense_variant	CASQ1|p.P368L|1|0.5|ENSG00000143318|chr1:160201288-160201288|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	602.6931762695312	2	602.790244	1203.56593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.606	1	74.606	74.106	75.106	0								0	0	0	0.15332	1	27176	27176		10.074	0	1				33094	294	24084	24255	32230	32230					-0.027706230385547315
LSAEGGAFYT	10	Unmodified	_LSAEGGAFYT_					0	0	0		HEATR5A|p.P1478S|1|0.27|ENSG00000129493|chr14:31312977-31312977|G/A|missense_variant	HEATR5A|p.P1478S|1|0.27|ENSG00000129493|chr14:31312977-31312977|G/A|missense_variant	HEATR5A|p.P1478S|1|0.27|ENSG00000129493|chr14:31312977-31312977|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	508.19976806640625	2	508.24019	1014.46583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.123	1	44.892	44.392	45.392	0.7691								0	0	0	0.15451	1	16460	16460		6.2058	0.97511	1				33095	14102	24085	24256	32231	32231					-0.0408281558170529
LSAETRRRRRH	11	Unmodified	_LSAETRRRRRH_					0	0	0			REV__ENST00000583780.1_2_17:18263786-18266854:-|nuORF	REV__ENST00000583780.1_2_17:18263786-18266854:-|nuORF	MSMS	A375_MHC_IP_R1	1	719.4154052734375	2	719.416531	1436.81851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.61	1	90.61	90.11	91.11	0								0	0	0	0.16297	1	33300	33300		3.2813	0	1		+		33096	26366	24086	24257	32232	32232					0.11757292325887647
LSAEVYRIL	9	Unmodified	_LSAEVYRIL_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;nc|ENSG00000130935|Q9H8H0-2|NOL11	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	A375_MHC_IP_R2	2	532.8046264648438	2	532.310949	1062.60735	-0.59902	-0.00031886	-0.032759	-1.7438E-05	-0.63178	-0.0003363	532.310731397641	84.275	0.30531	85.014	84.92	85.225	0.73962					9	5	2	0	0	0	0.37338	1	32075	32075		34.402	7.5181	1	1419300			33097	4293	24087	24258	32233	32233					0.0785460251142922
LSAEWGWGT	9	Unmodified	_LSAEWGWGT_					0	0	0			REV__ENST00000540667.5_1_12:6879612-6879909:+|nuORF	REV__ENST00000540667.5_1_12:6879612-6879909:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	504.1205749511719	2	503.735074	1005.4556	-0.41765	-0.00021039	-0.052188	-2.6289E-05	-0.46984	-0.00023668	503.73521194621924	53.405	0.86291	53.405	52.946	53.809	0					26	16	2	0	0	0	0.65246	1	18862	18862		10.824	4.6181	1	1386000	+		33098	25953	24088	24259	32234	32234					-0.04691378516270106
LSAFKNVYRV	10	Unmodified	_LSAFKNVYRV_					0	0	0			REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6	REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-SECPEP	A375_MHC_IP_R2	2	599.241455078125	2	598.842948	1195.67134	-1.0655	-0.00063805	-0.86685	-0.00051911	-1.9323	-0.0011572	598.8423947935089	52.89	0.40599	53.641	53.436	53.842	0.75105					11	7	2	0	0	0	0.92514	1	20003	20003		12.241	1.4411	1	2311700	+		33099	19196	24089	24260	32235	32235					0.08133382668370359
LSAGATRVY	9	Unmodified	_LSAGATRVY_					0	0	0		nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000147224|ENST00000372435|PRPS1	nc|ENSG00000147224|P60891-2|PRPS1	nc|ENSG00000147224|P60891-2|PRPS1	MULTI-MSMS	A375_MHC_IP_R1	1	469.65838623046875	2	469.258717	936.50288	-0.28461	-0.00013356	-0.050884	-2.3878E-05	-0.3355	-0.00015744	469.2587293439021	31.66	0.61069	31.66	31.465	32.075	0					21	11	3	0	0	0	0.017727	1	10151	10151		86.332	28.861	1	5596600			33100	5670	24090	24261	32236	32236					0.032089007547028814
LSAGATRVY	9	Unmodified	_LSAGATRVY_					0	0	0		nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000147224|ENST00000372435|PRPS1	nc|ENSG00000147224|P60891-2|PRPS1	nc|ENSG00000147224|P60891-2|PRPS1	MULTI-MSMS	A375_MHC_IP_R2	2	469.65850830078125	2	469.258717	936.50288	-0.6434	-0.00030192	0.08635	4.052E-05	-0.55705	-0.0002614	469.25872156448435	30.979	0.4565	31.698	31.467	31.923	0.71857					18	8	3	0	0	0	0.012447	1	10932	10932		93.166	24.061	1	7242200			33101	5670	24090	24261	32237	32237					0.032089007547028814
LSAGDDSETG	10	Unmodified	_LSAGDDSETG_					0	0	0		SLC3A2-GRAP2|2|fusion;nc|ENSG00000168003|P08195-5|SLC3A2	SLC3A2-GRAP2|2|fusion	SLC3A2-GRAP2|2|fusion	MSMS	A375_MHC_IP_R1	1	476.1505126953125	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.385	1	40.385	39.885	40.885	0								0	0	0	0.15332	1	13873	13873		10.074	1.4806	1				33102	14753	24091	24262	32238	32238					-0.09429177100366815
LSAGPPLF	8	Unmodified	_LSAGPPLF_					0	0	0			REV__nc|ENSG00000169946|Q8WW38-2|ZFPM2	REV__nc|ENSG00000169946|Q8WW38-2|ZFPM2	MULTI-SECPEP	A375_MHC_IP_R1	1	400.9486389160156	2	401.228897	800.44324	-0.19485	-7.8178E-05	-1.2235	-0.00049091	-1.4184	-0.00056909	401.22842530772357	43.41	0.55994	43.41	43.095	43.655	0					13	10	2	0	0	0	0.96296	1	15111	15111		2.5775	0	1	1325300	+		33103	20955	24092	24263	32239	32239					0.035036298113254816
LSAGSVGDVDL	11	Unmodified	_LSAGSVGDVDL_					0	0	0			REV__tr|U7SZL5|U7SZL5_FUSNUUrocanatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00788PE=3SV=1	REV__tr|U7SZL5|U7SZL5_FUSNUUrocanatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00788PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	516.6392822265625	2	516.764029	1031.5135	-0.53369	-0.00027579	0.037545	1.9402E-05	-0.49615	-0.00025639	516.7639680476784	33.983	0.55565	33.983	33.798	34.353	0					25	10	3	0	0	0	0.90584	1	11268	11268		17.113	0.96379	1	15395000	+		33104	28652	24093	24264	32240	32240					-0.0009916138151311316
LSAGVSGESSV	11	Unmodified	_LSAGVSGESSV_					0	0	0			REV__ENST00000450172.5_2_3:46722734-46730936:-|nuORF	REV__ENST00000450172.5_2_3:46722734-46730936:-|nuORF	MSMS	A375_MHC_IP_R2	2	496.6112060546875	2	496.748379	991.482204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.534	1	98.289	97.789	98.789	0.75586								0	0	0	0.14837	1	37018	37018		21.537	1.0834	1		+		33105	21483	24094	24265	32241	32241					-0.013877344155957871
LSAHFLLW	8	Unmodified	_LSAHFLLW_					0	0	0		ENSG00000177042|ENST00000397510|TMEM80;nc|ENSG00000177042|Q96HE8-2|TMEM80;ENST00000492023.1_1_11:700162-703983:+|nuORF	ENSG00000177042|ENST00000397510|TMEM80	ENSG00000177042|ENST00000397510|TMEM80	MULTI-SECPEP	A375_MHC_IP_R2	2	494.17578125	2	493.776545	985.538538	-0.86878	-0.00042898	-0.66469	-0.00032821	-1.5335	-0.00075719	493.7761808731161	52.155	0.65874	52.907	52.677	53.336	0.75225					18	12	2	0	0	0	0.88799	1	19706	19706		20.871	2.7362	1	5972500			33106	8057	24095	24266	32242	32242					0.045189830023673494
LSAITGIRF	9	Unmodified	_LSAITGIRF_					0	0	0		ENST00000253506.9_1_18:77288339-77288585:+|nuORF	ENST00000253506.9_1_18:77288339-77288585:+|nuORF	ENST00000253506.9_1_18:77288339-77288585:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	489.1502990722656	2	489.292559	976.570566	-0.23217	-0.0001136	-0.55362	-0.00027088	-0.78579	-0.00038448	489.2922236197895	102.06	0.40652	102.06	101.85	102.25	0					11	7	2	0	0	0	0.60917	1	37493	37493		19.257	0	1	1821200			33107	10218	24096	24267	32243	32243					0.0813435068552053
LSAKERHLV	9	Unmodified	_LSAKERHLV_					0	0	0		nc|ENSG00000111907|Q16890-4|TPD52L1;nc|ENSG00000111907|Q16890-3|TPD52L1;nc|ENSG00000111907|Q16890-2|TPD52L1;ENST00000392483.6_1_6:125475019-125569560:+|nuORF;nc|ENSG00000111907|Q16890-5|TPD52L1;ENST00000532978.5_1_6:125475518-125573183:+|nuORF;ENSG00000111907|ENST00000534000|TPD52L1	nc|ENSG00000111907|Q16890-4|TPD52L1	nc|ENSG00000111907|Q16890-4|TPD52L1	MULTI-SECPEP	A375_MHC_IP_R1	1	527.1841430664062	2	526.81419	1051.61383	-0.51356	-0.00027055	-0.47122	-0.00024825	-0.98479	-0.0005188	526.8138191103648	55.125	0.40583	55.125	54.924	55.33	0					11	7	2	0	0	0	0.58271	1	19702	19702		20.454	5.8719	1	1050800			33108	3040	24097	24268	32244	32244					0.09008540462787096
LSAKKGKG	8	Unmodified	_LSAKKGKG_					0	0	0		ENSG00000158113|ENST00000339777|LRRC43;nc|ENSG00000158113|Q8N309-2|LRRC43;nc|ENSG00000158113|Q8N309-3|LRRC43	ENSG00000158113|ENST00000339777|LRRC43	ENSG00000158113|ENST00000339777|LRRC43	MULTI-MSMS	A375_MHC_IP_R1	1	788.8997802734375	1	788.498864	787.491587	-0.79731	-0.00062868	2.7315	0.0021538	1.9342	0.0015251	788.5011179946844	144.79	0.13998	144.79	144.68	144.82	0					4	2	2	0	0	0	0.77861	1	55528	55528		0	0	1	361890			33109	6287	24098	24269	32245	32245					0.08934123451240339
LSAKPMIKFQ	10	Unmodified	_LSAKPMIKFQ_					0	0	0		GOLIM4|p.P395L|1|0.31|ENSG00000173905|chr3:168030029-168030029|G/A|missense_variant	GOLIM4|p.P395L|1|0.31|ENSG00000173905|chr3:168030029-168030029|G/A|missense_variant	GOLIM4|p.P395L|1|0.31|ENSG00000173905|chr3:168030029-168030029|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	388.6046447753906	3	388.22661	1161.658	0.18953	7.3582E-05	0.87938	0.0003414	1.0689	0.00041498	388.2265208947443	34.077	0.70909	34.077	33.798	34.507	0					33	13	4	0	0	0	0.70651	1	11088	11088		5.4027	1.2132	1	12477000			33110	14057	24099	24270	32246	32246					0.08363808564786268
LSALCVVDVKQ	11	Unmodified	_LSALCVVDVKQ_					0	0	0			REV__nc|ENSG00000108506|Q9H0H0|INTS2	REV__nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-SECPEP	A375_MHC_IP_R1	1	587.7274780273438	2	587.828649	1173.64274	-0.27748	-0.00016311	-1.7438	-0.0010251	-2.0213	-0.0011882	588.3295838126035	98.939	0.7634	98.939	98.659	99.422	0					21	14	2	0	0	0	0.98524	1	36453	36453		10.8	0	1	2084000	+		33111	17534	24100	24271	32247	32247					0.06286896976916978
LSALIATEPV	10	Unmodified	_LSALIATEPV_					0	0	0		nc|ENSG00000123106|Q7Z6B0-3|CCDC91;nc|ENSG00000123106|Q7Z6B0-2|CCDC91;ENST00000535520.5_1_12:28412355-28702103:+|nuORF;ENSG00000123106|ENST00000536442|CCDC91;ENST00000540401.5_1_12:28421609-28702103:+|nuORF	nc|ENSG00000123106|Q7Z6B0-3|CCDC91	nc|ENSG00000123106|Q7Z6B0-3|CCDC91	MULTI-SECPEP	A375_MHC_IP_R1	1	507.3761291503906	2	507.297507	1012.58046	-0.51892	-0.00026325	1.9397	0.00098402	1.4208	0.00072077	507.8000793152682	80.346	0.96509	80.346	79.728	80.693	0					27	18	2	0	0	0	0.64716	1	29250	29250		36.127	1.7253	1	2433300			33112	3826	24101	24272	32248	32248					0.07467493900230693
LSALLSKNV	9	Unmodified	_LSALLSKNV_					0	0	0			REV__KRT74|p.P124S|1|0.16|ENSG00000170484|chr12:52573408-52573408|G/A|missense_variant	REV__KRT74|p.P124S|1|0.16|ENSG00000170484|chr12:52573408-52573408|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	472.14825439453125	2	472.792392	943.570232	-0.39737	-0.00018788	0.25605	0.00012106	-0.14132	-6.6817E-05	472.7924024769453	50.94	0.35479	50.94	50.713	51.068	0					11	6	2	0	0	0	0.35487	1	18069	18069		43.858	0.085901	1	1185700	+		33113	26872	24102	24273	32249	32249					0.0961893096566655
LSALNQFNEL	10	Unmodified	_LSALNQFNEL_					0	0	0			REV__ENSG00000196110|ENST00000591998|ZNF699	REV__ENSG00000196110|ENST00000591998|ZNF699	MULTI-SECPEP	A375_MHC_IP_R1	1	574.1637573242188	2	574.800946	1147.58734	-0.10174	-5.8482E-05	-0.054936	-3.1577E-05	-0.15668	-9.0059E-05	574.8008486199204	62.353	0.76637	62.353	62.097	62.863	0					36	14	3	0	0	0	0.83355	1	22553	22553		8.1555	0	1	7273400	+		33114	22159	24103	24274	32250	32250					0.01944806780829822
LSALPDLLLLL	11	Unmodified	_LSALPDLLLLL_					0	0	0			REV__ENST00000311604.7_1_11:1913083-1913311:+|nuORF	REV__ENST00000311604.7_1_11:1913083-1913311:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	591.28125	2	590.881207	1179.74786	-0.37583	-0.00022207	0.14463	8.5456E-05	-0.23121	-0.00013661	590.8809629533721	145.05	0.1433	145.08	144.98	145.12	0.021408					7	4	2	0	0	0	0.73332	2	56640	56640;56644		5.7319	0	1	599460	+		33115	23510	24104	24275	32251;32252	32251					0.16517761445015822
LSALPDLLLLL	11	Unmodified	_LSALPDLLLLL_					0	0	0			REV__ENST00000311604.7_1_11:1913083-1913311:+|nuORF	REV__ENST00000311604.7_1_11:1913083-1913311:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	591.28125	2	590.881207	1179.74786	-0.37583	-0.00022207	0.14463	8.5456E-05	-0.23121	-0.00013661	590.8809629533721	145.05	0.1433	145.08	144.98	145.12	0.021408					7	4	2	0	0	0	0.99676	1	56640	56640		5.7319	0	1	599460	+		33116	23510	24104	24275	32253	32253					0.16517761445015822
LSALPSPHW	9	Unmodified	_LSALPSPHW_					0	0	0		ENST00000261712.7_1_17:30808265-30808418:+|nuORF	ENST00000261712.7_1_17:30808265-30808418:+|nuORF	ENST00000261712.7_1_17:30808265-30808418:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1688232421875	2	504.269084	1006.52362	-0.56704	-0.00028594	3.5752	0.0018028	3.0081	0.0015169	504.27079070287806	47.918	0.2509	48.679	48.582	48.833	0.76128					6	4	2	0	0	0	0.62767	1	18012	18012		7.2892	0	1	673930			33117	10287	24105	24276	32254	32254					0.020614911343727726
LSALQLLKMD	10	Unmodified	_LSALQLLKMD_					0	0	0		ENSG00000129009|ENST00000249842|ISLR	ENSG00000129009|ENST00000249842|ISLR	ENSG00000129009|ENST00000249842|ISLR	MULTI-MSMS	A375_MHC_IP_R1	1	378.2646484375	3	377.886253	1130.63693	0.22959	8.6759E-05	-2.1281	-0.00080417	-1.8985	-0.00071741	378.21942410276637	52.579	0.45976	52.579	52.387	52.847	0					12	8	2	0	0	0	0.66308	1	18740	18740		10.315	0	1	1331500			33118	4173	24106	24277	32255	32255					0.07683798465245673
LSAMGSGRYLF	11	Unmodified	_LSAMGSGRYLF_					0	0	0			REV__ENST00000311085.8_2_5:118485168-118485210:+|nuORF	REV__ENST00000311085.8_2_5:118485168-118485210:+|nuORF	MSMS	A375_MHC_IP_R1	1	401.1529235839844	3	401.205986	1200.59613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.825	1	40.825	40.325	41.325	0								0	0	0	0.16249	1	14058	14058		2.6312	0	1		+		33119	23505	24107	24278	32256	32256					0.003854571456258782
LSANPTMYSY	10	Unmodified	_LSANPTMYSY_					0	0	0		tr|U7SIS5|U7SIS5_FUSNUCRISPR-associatedendoribonucleasecas6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02168PE=4SV=1	tr|U7SIS5|U7SIS5_FUSNUCRISPR-associatedendoribonucleasecas6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02168PE=4SV=1	tr|U7SIS5|U7SIS5_FUSNUCRISPR-associatedendoribonucleasecas6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02168PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	573.6823120117188	2	573.760432	1145.50631	-0.624	-0.00035802	0.062219	3.5699E-05	-0.56178	-0.00032233	573.7605159282338	59.491	0.7078	60.238	59.845	60.553	0.74714					26	13	3	0	0	0	0.60556	1	22370	22370		20.454	2.3186	1	5511300			33120	29433	24108	24279	32257	32257					-0.06062217253588642
LSANVMQLNI	10	Unmodified	_LSANVMQLNI_					0	0	0			REV__ENST00000582201.5_1_17:62781409-62811241:-|nuORF	REV__ENST00000582201.5_1_17:62781409-62811241:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	368.6327819824219	3	368.202353	1101.58523	-0.057182	-2.1054E-05	-2.157	-0.0007942	-2.2141	-0.00081525	368.2015266834725	24.119	0.30451	24.762	24.653	24.958	0.64368					7	5	2	0	0	0	0.9269	1	7917	7917		3.5871	0	1	1479500	+		33121	22713	24109	24280	32258	32258					0.03850054771351097
LSAPARLY	8	Unmodified	_LSAPARLY_					0	0	0		ENST00000545932.5_1_12:108956374-108956593:+|nuORF;ENSG00000136003|ENST00000311893|ISCU	ENST00000545932.5_1_12:108956374-108956593:+|nuORF	ENST00000545932.5_1_12:108956374-108956593:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	446.1584167480469	2	445.758352	889.502152	0.032693	1.4573E-05	0.0018421	8.2112E-07	0.034535	1.5394E-05	445.75838386076646	50.09	0.6651	50.09	49.743	50.408	0					17	12	2	0	0	0	0.84748	1	17734	17734		28.487	0	1	4340700			33122	4739	24110	24281	32259	32259					0.05298106105658462
LSAPARLY	8	Unmodified	_LSAPARLY_					0	0	0		ENST00000545932.5_1_12:108956374-108956593:+|nuORF;ENSG00000136003|ENST00000311893|ISCU	ENST00000545932.5_1_12:108956374-108956593:+|nuORF	ENST00000545932.5_1_12:108956374-108956593:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	446.1580810546875	2	445.758352	889.502152	-0.61338	-0.00027342	-0.06572	-2.9295E-05	-0.6791	-0.00030271	445.7583379124017	49.297	0.60645	50.054	49.741	50.348	0.75737					19	11	2	0	0	0	0.73563	1	18519	18519		44.407	10.305	1	2880100			33123	4739	24110	24281	32260	32260					0.05298106105658462
LSAPDTVLIER	11	Unmodified	_LSAPDTVLIER_					0	0	0		ENSG00000165695|ENST00000298545|AK8;ENST00000476719.1_1_9:135601077-135753754:-|nuORF;ENST00000477396.5_1_9:135702810-135749757:-|nuORF	ENSG00000165695|ENST00000298545|AK8	ENSG00000165695|ENST00000298545|AK8	MULTI-SECPEP	A375_MHC_IP_R2	2	607.174560546875	2	607.342978	1212.6714	-0.24409	-0.00014825	-0.64016	-0.0003888	-0.88425	-0.00053704	607.841853431536	93.819	0.35529	94.563	94.412	94.768	0.74474					8	6	2	0	0	0	0.9754	1	35643	35643		17.113	7.7298	1	813730			33124	6981	24111	24282	32261	32261					0.07357337877715509
LSAPMDFYR	9	Unmodified	_LSAPMDFYR_					0	0	0		ENSG00000116786|ENST00000375799|PLEKHM2;nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	ENSG00000116786|ENST00000375799|PLEKHM2	ENSG00000116786|ENST00000375799|PLEKHM2	MULTI-MSMS	A375_MHC_IP_R1	1	550.6654052734375	2	550.265684	1098.51682	-0.5199	-0.00028608	0.36469	0.00020068	-0.1552	-8.5403E-05	550.26566871314	59.922	0.45811	59.922	59.599	60.057	0					17	8	3	0	0	0	0.55818	1	21560	21560		16.942	1.0951	1	2422300			33125	3432	24112	24283	32262	32262					-0.0285018980850964
LSAPPKEEPN	10	Unmodified	_LSAPPKEEPN_					0	0	0			REV__ENSG00000198597|ENST00000355537|ZNF536	REV__ENSG00000198597|ENST00000355537|ZNF536	MULTI-MSMS	A375_MHC_IP_R2	2	542.1934814453125	2	541.279846	1080.54514	-1.1533	-0.00062424	0.14762	7.9903E-05	-1.0056	-0.00054433	541.2801137352819	56.376	1.5812	57.126	56.337	57.918	0.75015					95	30	4	0	0	0	0.57505	1	21101	21101		22.736	3.4793	1	108810000	+		33126	22387	24113	24284	32263	32263					0.008088313724329055
LSAPPPLQVL	10	Unmodified	_LSAPPPLQVL_					0	0	0		ENST00000526104.5_2_11:208097-208547:+|nuORF	ENST00000526104.5_2_11:208097-208547:+|nuORF	ENST00000526104.5_2_11:208097-208547:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1529541015625	2	517.815867	1033.61718	-0.9666	-0.00050052	1.0394	0.00053822	0.072808	3.7701E-05	518.3174471358637	49.947	0.2057	50.701	50.548	50.753	0.75406					5	3	2	0	0	0	0.78945	1	18738	18738		9.3831	2.0939	1	500880			33127	13077	24114	24285	32264	32264					0.10171790516801593
LSAPREHQL	9	Unmodified	_LSAPREHQL_					0	0	0			REV__nc|ENSG00000154556|O94875-11|SORBS2	REV__nc|ENSG00000154556|O94875-11|SORBS2	MULTI-MSMS	A375_MHC_IP_R1	1	526.1876220703125	2	525.788173	1049.56179	-0.91446	-0.00048081	-0.24786	-0.00013032	-1.1623	-0.00061114	525.7878566826629	29.49	0.547	29.49	29.201	29.748	0					16	10	3	0	0	0	0.22013	1	9245	9245		36.506	0.37917	1	20242000	+		33128	27299	24115	24286	32265	32265					0.03899377049060604
LSAPREHQL	9	Unmodified	_LSAPREHQL_					0	0	0			REV__nc|ENSG00000154556|O94875-11|SORBS2	REV__nc|ENSG00000154556|O94875-11|SORBS2	MULTI-MSMS	A375_MHC_IP_R2	2	526.1873168945312	2	525.788173	1049.56179	-1.1378	-0.00059825	-0.39798	-0.00020926	-1.5358	-0.0008075	525.7879507568091	28.721	0.49686	29.42	29.283	29.78	0.69872					15	9	3	0	0	0	0.31062	1	9980	9980		29.841	0	1	16192000	+		33129	27299	24115	24286	32266	32266					0.03899377049060604
LSAPTSRLSV	10	Unmodified	_LSAPTSRLSV_					0	0	0		ENST00000467609.5_1_17:19582001-19584787:-|nuORF;ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8-4|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2	ENST00000467609.5_1_17:19582001-19584787:-|nuORF	ENST00000467609.5_1_17:19582001-19584787:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	516.1978149414062	2	515.798206	1029.58186	-0.75756	-0.00039075	0.43458	0.00022415	-0.32299	-0.0001666	515.7985370455949	76.465	0.40614	77.205	77.045	77.451	0.74052					11	7	2	0	0	0	0.1276	1	29072	29072		57.722	8.1677	1	1417000			33130	8306	24116	24287	32267	32267					0.06825127988986424
LSAPVPVPPG	10	Unmodified	_LSAPVPVPPG_					0	0	0			REV__ENST00000527884.5_1_11:19261698-19263156:-|nuORF	REV__ENST00000527884.5_1_11:19261698-19263156:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	467.6915283203125	2	467.273835	932.533118	-0.69505	-0.00032478	-0.17724	-8.2819E-05	-0.87229	-0.0004076	467.27380049241924	106.69	0.40627	107.44	107.24	107.65	0.75977					10	7	2	0	0	0	0.55789	1	40354	40354		24.021	2.2739	1	1419600	+		33131	25793	24117	24288	32268	32268					0.06415259419907215
LSAQGFVFNW	10	Unmodified	_LSAQGFVFNW_					0	0	0			REV__ENST00000578175.5_1_17:66246915-66252971:+|nuORF	REV__ENST00000578175.5_1_17:66246915-66252971:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	584.1878051757812	2	584.792924	1167.57129	-0.2972	-0.0001738	2.8746	0.001681	2.5774	0.0015072	585.2950286792001	79.969	0.87068	79.969	79.418	80.289	0					57	16	5	0	0	0	0.64716	1	29040	29040		22.736	0	1	10106000	+		33132	22226	24118	24289	32269	32269					-0.005788546654230231
LSAQNQLVTI	10	Unmodified	_LSAQNQLVTI_					0	0	0			REV__ADGRV1|p.P3196S|1|0.28|ENSG00000164199|chr5:90720186-90720186|C/T|missense_variant	REV__ADGRV1|p.P3196S|1|0.28|ENSG00000164199|chr5:90720186-90720186|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	544.2114868164062	2	543.811313	1085.60807	-0.65579	-0.00035662	0.13026	7.0838E-05	-0.52553	-0.00028579	543.8112948402284	80.096	0.71323	80.096	79.778	80.492	0					30	13	3	0	0	0	0.20175	1	29288	29288		61.602	5.4249	1	11804000	+		33133	15332	24119	24290	32270	32270					0.06869397160471635
LSARDYVAF	9	Unmodified	_LSARDYVAF_					0	0	0		ENST00000244745.3_2_6:21594235-21594328:+|nuORF	ENST00000244745.3_2_6:21594235-21594328:+|nuORF	ENST00000244745.3_2_6:21594235-21594328:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	521.1613159179688	2	521.271824	1040.5291	-0.49326	-0.00025712	0.5408	0.00028191	0.04754	2.4781E-05	521.2715252104983	55.38	1.3215	55.38	54.822	56.143	0					61	25	5	0	0	0	0.59098	1	19830	19830		16.149	7.4037	1	6588800			33134	10178	24120	24291	32271	32271					0.010451699261693648
LSAREAALRY	10	Unmodified	_LSAREAALRY_					0	0	0			REV__DNAH17|p.P3653L|1|0.39|ENSG00000187775|chr17:78450336-78450336|G/A|missense_variant	REV__DNAH17|p.P3653L|1|0.39|ENSG00000187775|chr17:78450336-78450336|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	575.6625366210938	2	575.32238	1148.63021	-0.12813	-7.3718E-05	3.0671	0.0017646	2.939	0.0016908	575.323717731728	96.629	0.30315	96.629	96.478	96.781	0					7	5	2	0	0	0	0.91909	1	35464	35464		9.3831	6.6479	1	536010	+		33135	16006	24121	24292	32272	32272					0.061836216289066215
LSARFKLL	8	Unmodified	_LSARFKLL_					0	0	0			REV__BAAT|p.E175K|1|0.23|ENSG00000136881|chr9:101368266-101368266|C/T|missense_variant	REV__BAAT|p.E175K|1|0.23|ENSG00000136881|chr9:101368266-101368266|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	474.7052917480469	2	474.30547	946.596387	-0.66963	-0.00031761	0.65188	0.00030919	-0.017752	-8.4197E-06	474.3057100805737	52.85	0.60735	52.85	52.592	53.199	0					22	11	3	0	0	0	0.68964	1	18834	18834		37.974	1.5079	1	2647200	+		33136	15494	24122	24293	32273	32273					0.12095244927797921
LSARHVPSLI	10	Unmodified	_LSARHVPSLI_					0	0	0		ENSG00000081760|ENST00000316519|AACS;nc|ENSG00000081760|Q86V21-3|AACS	ENSG00000081760|ENST00000316519|AACS	ENSG00000081760|ENST00000316519|AACS	MULTI-SECPEP	A375_MHC_IP_R2	2	547.2288818359375	2	546.82984	1091.64513	-1.0364	-0.00056672	-0.87719	-0.00047968	-1.9136	-0.0010464	546.8293094871358	36.419	0.50853	37.19	36.901	37.41	0.7709					16	9	2	0	0	0	0.8125	1	13333	13333		18.146	0	1	2997300			33137	1742	24123	24294	32274	32274					0.10297113496903876
LSARHVPSLI	10	Unmodified	_LSARHVPSLI_					0	0	0		ENSG00000081760|ENST00000316519|AACS;nc|ENSG00000081760|Q86V21-3|AACS	ENSG00000081760|ENST00000316519|AACS	ENSG00000081760|ENST00000316519|AACS	MULTI-MATCH	A375_MHC_IP_R1	1		2	546.82984	1091.64513	-0.38648	-0.00021134	-1.4146	-0.00077353	-1.801	-0.00098487	546.8289902747156	37.536	0.46038	37.536	37.301	37.761	0	0.17315	-0.00024031	NaN	18.146	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4263300			33138	1742	24123	24294							0.10297113496903876
LSARPGLPGCL	11	Unmodified	_LSARPGLPGCL_					0	0	0		ENST00000478582.5_1_7:45077926-45109516:+|nuORF;ENST00000492883.5_1_7:45067303-45109516:+|nuORF	ENST00000478582.5_1_7:45077926-45109516:+|nuORF	ENST00000478582.5_1_7:45077926-45109516:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	362.2803955078125	3	361.870826	1082.59065	-0.62312	-0.00022549	0.20225	7.3189E-05	-0.42087	-0.0001523	361.87084768573953	25.546	0.20192	26.202	26.09	26.292	0.65578					5	3	2	0	0	0	0.9836	1	8512	8512		3.8459	0	1	1753200			33139	12466	24124	24295	32275	32275					0.05265778353850692
LSARRSRRY	9	Unmodified	_LSARRSRRY_					0	0	0			REV__ENST00000530595.1_1_11:57418072-57418390:+|nuORF	REV__ENST00000530595.1_1_11:57418072-57418390:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	388.2584533691406	3	388.895134	1163.66357	-0.6018	-0.00023404	1.3239	0.00051485	0.72208	0.00028081	388.8959206101384	25.888	0.45765	26.548	26.296	26.754	0.65992					13	8	3	0	0	0	0.77003	1	8702	8702		4.5289	0	1	1376500	+		33140	25840	24125	24296	32276	32276					0.08828668191472389
LSARRTVQ	8	Unmodified	_LSARRTVQ_					0	0	0			REV__ENST00000219169.8_1_16:67905422-67905869:+|nuORF	REV__ENST00000219169.8_1_16:67905422-67905869:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	466.1772766113281	2	465.777608	929.540663	-0.60632	-0.00028241	0.037691	1.7556E-05	-0.56863	-0.00026485	465.77757063044	104.48	2.7454	105.24	103.94	106.68	0.76308					70	53	2	0	0	0	0.77603	1	39492	39492		9.3474	0	1	4077000	+		33141	23044	24126	24297	32277	32277					0.07307411740180214
LSARRTVQ	8	Unmodified	_LSARRTVQ_					0	0	0			REV__ENST00000219169.8_1_16:67905422-67905869:+|nuORF	REV__ENST00000219169.8_1_16:67905422-67905869:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	465.777608	929.540663	-0.60632	-0.00028241	0.037691	1.7556E-05	-0.56863	-0.00026485	465.77757063044	104.48	2.7454	105.24	103.94	106.68	0.76308	0.19368	2.2887E-06	NaN	9.3474	70	53	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4077000	+		33142	23044	24126	24297							0.07307411740180214
LSARSARDGWW	11	Unmodified	_LSARSARDGWW_					0	0	0			REV__ENST00000356083.7_1_9:117038004-117062962:+|nuORF	REV__ENST00000356083.7_1_9:117038004-117062962:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	435.95465087890625	3	435.554666	1303.64217	-0.23014	-0.00010024	-0.59858	-0.00026072	-0.82872	-0.00036095	435.5545588688084	63.078	0.50687	63.82	63.584	64.091	0.74263					15	9	2	0	0	0	0.73354	1	23964	23964		5.5233	2.2037	1	1667400	+		33143	23828	24127	24298	32278	32278					0.0024923837208916666
LSARSARDGWW	11	Unmodified	_LSARSARDGWW_					0	0	0			REV__ENST00000356083.7_1_9:117038004-117062962:+|nuORF	REV__ENST00000356083.7_1_9:117038004-117062962:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	435.554666	1303.64217	-0.23014	-0.00010024	-0.59858	-0.00026072	-0.82872	-0.00036095	435.5545588688084	63.078	0.50687	63.82	63.584	64.091	0.74263	-0.051559	-0.00014369	NaN	5.5233	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1667400	+		33144	23828	24127	24298							0.0024923837208916666
LSASPAQEY	9	Unmodified	_LSASPAQEY_					0	0	0			REV__ENST00000554523.5_1_14:68228796-68282710:-|nuORF	REV__ENST00000554523.5_1_14:68228796-68282710:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	483.6316223144531	2	483.232364	964.450176	-0.079843	-3.8583E-05	1.3131	0.00063455	1.2333	0.00059597	483.2313378315167	21.331	0.55834	21.331	21.148	21.706	0					15	10	2	0	0	0	0.60101	1	5651	5651		14.838	1.3304	1	1618600	+		33145	16597	24128	24299	32279	32279					-0.033471020987576594
LSATMPTDV	9	Unmodified	_LSATMPTDV_					0	0	0		EIF4A2|p.F391Lfs*14|1|0.08|ENSG00000156976|chr3:186789217-186789218|TC/-|frameshift_variant;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000485101.5_1_3:186504293-186504446:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENST00000525903.1_1_11:58009969-58010080:-|nuORF	EIF4A2|p.F391Lfs*14|1|0.08|ENSG00000156976|chr3:186789217-186789218|TC/-|frameshift_variant	EIF4A2|p.F391Lfs*14|1|0.08|ENSG00000156976|chr3:186789217-186789218|TC/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	468.646240234375	2	467.731143	933.447733	-1.0315	-0.00048247	-0.046361	-2.1684E-05	-1.0779	-0.00050416	467.73111938677584	59.118	0.55729	59.865	59.59	60.148	0.74714					26	10	3	0	0	0	0.43185	1	22398	22398		23.148	7.3012	1	2779400			33146	832	24129	24300	32280	32280					-0.021652738280636186
LSAVHSPTF	9	Unmodified	_LSAVHSPTF_					0	0	0		nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1;ENST00000592208.5_1_19:10433104-10439782:-|nuORF;nc|ENSG00000161847|Q8IY67|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	MULTI-SECPEP	A375_MHC_IP_R1	1	480.1531677246094	2	479.753267	957.491981	-0.47996	-0.00023026	0.87629	0.0004204	0.39633	0.00019014	479.7535187827974	80.072	0.45995	80.072	79.778	80.238	0					12	8	2	0	0	0	0.55359	1	29264	29264		21.747	1.293	1	1224300			33147	6489	24130	24301	32281	32281					0.011534983804381227
LSAVPQSF	8	Unmodified	_LSAVPQSF_					0	0	0		ENST00000545560.6_1_13:102105061-102220056:+|nuORF;ITGBL1|p.E369Gfs*16|1|0.69|ENSG00000198542|chr13:101692671-101692687|TGTGAAGACCTCGATGG/-|frameshift_variant;ENSG00000198542|ENST00000376180|ITGBL1	ENST00000545560.6_1_13:102105061-102220056:+|nuORF	ENST00000545560.6_1_13:102105061-102220056:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	425.1291198730469	2	424.729261	847.443968	-0.058928	-2.5028E-05	0.22433	9.5278E-05	0.1654	7.025E-05	424.72920501702185	33.581	0.65897	33.581	33.342	34.001	0					23	12	3	0	0	0	0.73227	1	10981	10981		24.021	0	1	6706600			33148	9279	24131	24302	32282	32282					0.014144244603926381
LSAVYGVLAV	10	Unmodified	_LSAVYGVLAV_					0	0	0			REV__ENSG00000147606|ENST00000276609|SLC26A7	REV__ENSG00000147606|ENST00000276609|SLC26A7	MULTI-SECPEP	A375_MHC_IP_R1	1	496.3883056640625	2	496.294768	990.574983	-0.50739	-0.00025182	-2.6175	-0.0012991	-3.1249	-0.0015509	496.29295869432485	86.915	0.35328	86.915	86.781	87.134	0					8	6	2	0	0	0	0.69172	1	31948	31948		25.399	4.9457	1	875380	+		33149	19599	24132	24303	32283	32283					0.07931815108440787
LSAWAVDSLL	10	Unmodified	_LSAWAVDSLL_					0	0	0			REV__ENSG00000160294|ENST00000291688|MCM3AP	REV__ENSG00000160294|ENST00000291688|MCM3AP	MULTI-SECPEP	A375_MHC_IP_R1	1	537.6690673828125	2	537.795132	1073.57571	-0.68476	-0.00036826	0.94689	0.00050923	0.26213	0.00014097	537.7970075855735	74.643	0.45729	74.643	74.4	74.857	0					11	8	2	0	0	0	0.91909	1	27157	27157		9.3831	5.0539	1	920230	+		33150	20159	24133	24304	32284	32284					0.0418660975747116
LSAYLTQQV	9	Unmodified	_LSAYLTQQV_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1799926757812	2	511.779482	1021.54441	-0.68438	-0.00035025	0.40291	0.0002062	-0.28147	-0.00014405	511.77961522082586	70.029	0.55993	70.763	70.437	70.997	0.73421					27	10	3	0	0	0	0.11436	1	26512	26512		41.84	0	1	22036000			33151	3357	24134	24305	32285	32285					0.03450036723370431
LSAYQRKCIQ	10	Unmodified	_LSAYQRKCIQ_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000576708.5_2_17:5265347-5290366:-|nuORF;ENST00000574087.1_1_17:5290026-5291157:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MULTI-SECPEP	A375_MHC_IP_R2	2	605.7236938476562	2	605.324065	1208.63358	-0.7814	-0.000473	-0.050547	-3.0597E-05	-0.83195	-0.0005036	605.3239480686268	37.469	0.66427	38.24	37.917	38.581	0.7709					21	12	2	0	0	0	0.92514	1	13706	13706		12.241	5.5175	1	3915500			33152	2814	24135	24306	32286	32286					0.03760548411264608
LSAYYRNL	8	Unmodified	_LSAYYRNL_					0	0	0			REV__nc|ENSG00000131096|P10082-2|PYY	REV__nc|ENSG00000131096|P10082-2|PYY	MULTI-SECPEP	A375_MHC_IP_R1	1	500.695068359375	2	500.266542	998.51853	-0.44176	-0.000221	0.34723	0.00017371	-0.09453	-4.729E-05	500.7683592852079	64.815	0.50896	64.815	64.546	65.055	0					11	9	2	0	0	0	0.92636	1	23414	23414		16.942	0	1	902850	+		33153	18589	24136	24307	32287	32287					0.01921187271761937
LSCAESFINAF	11	Unmodified	_LSCAESFINAF_					0	0	0			REV__ACSM3|p.L111F|1|0.37|ENSG00000005187|chr16:20775950-20775950|C/T|missense_variant	REV__ACSM3|p.L111F|1|0.37|ENSG00000005187|chr16:20775950-20775950|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	601.1611938476562	2	601.281531	1200.54851	-0.3313	-0.0001992	-3.5075	-0.002109	-3.8388	-0.0023082	601.2801105825909	102.94	0.3056	102.94	102.86	103.17	0					6	5	2	0	0	0	0.72565	1	37856	37856		13.042	5.1323	1	786490	+		33154	15301	24137	24308	32288	32288					-0.04374241845243887
LSCHWLLT	8	Unmodified	_LSCHWLLT_					0	0	0			REV__ENSG00000253729|ENST00000314191|PRKDC	REV__ENSG00000253729|ENST00000314191|PRKDC	MSMS	A375_MHC_IP_R1	1	486.697509765625	2	486.752213	971.489873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.127	1	68.127	67.627	68.627	0								0	0	0	0.16876	1	24694	24694		18.135	0	1		+		33155	22858	24138	24309	32289	32289					0.0029874637097009327
LSCICCALN	9	Carbamidomethyl (C)	_LSC(Carbamidomethyl (C))ICCALN_	LSC(0.333)IC(0.333)C(0.333)ALN		LSC(0)IC(0)C(0)ALN		0	1	0		ENST00000484919.5_1_8:67405883-67422509:+|nuORF	ENST00000484919.5_1_8:67405883-67422509:+|nuORF	ENST00000484919.5_1_8:67405883-67422509:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	499.1200256347656	2	498.719198	995.423843	-0.42053	-0.00020972	1.6956	0.00084561	1.275	0.00063588	498.7198444184289	98.759	0.6093	99.519	99.352	99.961	0.75977					19	11	2	0	0	0	0.067501	1	37483	37483		57.471	17.514	3	1475500			33156	12567	24139	24310	32290	32290	58;59;60				-0.07405153857746427
LSCKRLHCI	9	Unmodified	_LSCKRLHCI_					0	0	0			REV__ENST00000549982.5_1_12:93895027-93895117:+|nuORF	REV__ENST00000549982.5_1_12:93895027-93895117:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	358.28399658203125	3	358.196656	1071.56814	-0.61456	-0.00022013	-0.48654	-0.00017428	-1.1011	-0.00039441	358.196522809732	26.274	0.66106	26.934	26.5	27.161	0.65992					20	12	2	0	0	0	0.63622	1	8831	8831		19.362	2.7961	1	2194900	+		33157	26030	24140	24311	32291	32291					0.03521855684539332
LSCLRVGRR	9	Unmodified	_LSCLRVGRR_					0	0	0			REV__ENST00000495880.1_1_3:52083316-52083664:-|nuORF	REV__ENST00000495880.1_1_3:52083316-52083664:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	353.25372314453125	3	353.878315	1058.61312	-0.11085	-3.9227E-05	-0.19788	-7.0027E-05	-0.30873	-0.00010925	354.2128161633011	52.489	0.76166	52.489	52.085	52.847	0					20	14	2	0	0	0	0.76827	1	18702	18702		7.1017	3.8204	1	1419600	+		33158	25451	24141	24312	32292	32292					0.08615422542106899
LSCLSSLPLL	10	Unmodified	_LSCLSSLPLL_					0	0	0		nc|ENSG00000167371|Q7Z6L0-2|PRRT2	nc|ENSG00000167371|Q7Z6L0-2|PRRT2	nc|ENSG00000167371|Q7Z6L0-2|PRRT2	MULTI-SECPEP	A375_MHC_IP_R1	1	522.6950073242188	2	523.301736	1044.58892	-0.42503	-0.00022242	3.9719	0.0020785	3.5469	0.0018561	523.3030428447257	128.5	0.5072	128.5	128.28	128.79	0					15	9	3	0	0	0	0.94102	1	49336	49336		2.9952	0.93549	1	3024200			33159	14745	24142	24313	32293	32293					0.06840724545213561
LSCMYWGF	8	Unmodified	_LSCMYWGF_					0	0	0			REV__ICMT|p.L102V|1|0.2|ENSG00000116237|chr1:6233624-6233624|A/C|missense_variant	REV__ICMT|p.L102V|1|0.2|ENSG00000116237|chr1:6233624-6233624|A/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1112976074219	2	503.711699	1005.40885	-0.78225	-0.00039403	0.084176	4.24E-05	-0.69807	-0.00035163	503.7117550288132	55.143	0.71381	55.894	55.523	56.237	0.75075					17	13	2	0	0	0	0.972	1	20910	20910		2.5775	2.5775	1	1930700	+		33160	17949	24143	24314	32294	32294					-0.0936427766343968
LSCSSWSSY	9	Unmodified	_LSCSSWSSY_					0	0	0		nc|ENSG00000240403|P43630-2|KIR3DL2;ENSG00000240403|ENST00000326321|KIR3DL2	nc|ENSG00000240403|P43630-2|KIR3DL2	nc|ENSG00000240403|P43630-2|KIR3DL2	MSMS	A375_MHC_IP_R2	2	510.2236633300781	2	510.210575	1018.4066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.156	1	74.893	74.393	75.393	0.73752								0	0	0	0.15486	1	28145	28145		11.64	2.2929	1				33161	9773	24144	24315	32295	32295					-0.10187034867544753
LSCTSPCSCY	10	Unmodified	_LSCTSPCSCY_					0	0	0		ENST00000464590.1_1_11:3844931-3845577:+|nuORF;ENST00000478773.5_1_11:3829798-3845998:+|nuORF;ENST00000532017.5_1_11:3832520-3846091:+|nuORF;nc|ENSG00000148985|Q9UHJ9-4|PGAP2;nc|ENSG00000148985|Q9UHJ9-3|PGAP2;nc|ENSG00000148985|Q9UHJ9|PGAP2;nc|ENSG00000148985|Q9UHJ9-5|PGAP2;ENSG00000148985|ENST00000278243|PGAP2	ENST00000464590.1_1_11:3844931-3845577:+|nuORF	ENST00000464590.1_1_11:3844931-3845577:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	532.7036743164062	2	532.198296	1062.38204	-0.56759	-0.00030207	0.40806	0.00021717	-0.15953	-8.4899E-05	532.1986244638841	34.854	0.91457	34.854	34.608	35.522	0					32	17	3	0	0	0	0.71866	1	11721	11721		3.9444	0	1	4555200			33162	5776	24145	24316	32296	32296					-0.14665754336920145
LSCVVVCEV	9	Carbamidomethyl (C)	_LSC(Carbamidomethyl (C))VVVCEV_	LSC(0.998)VVVC(0.002)EV		LSC(26)VVVC(-26)EV		0	1	0		PARP16|p.A213V|1|0.34|ENSG00000138617|chr15:65263202-65263202|G/A|missense_variant	PARP16|p.A213V|1|0.34|ENSG00000138617|chr15:65263202-65263202|G/A|missense_variant	PARP16|p.A213V|1|0.34|ENSG00000138617|chr15:65263202-65263202|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	504.1781005859375	2	504.248646	1006.48274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.4	1	130.4	129.9	130.9	0								0	0	0	0.089973	1	50180	50180		44.407	12.29	2				33163	15112	24146	24317	32297	32297	67				-0.020243542917683044
LSCYVLSLYG	10	Unmodified	_LSCYVLSLYG_					0	0	0			REV__nc|ENSG00000197782|O75290-2|ZNF780A	REV__nc|ENSG00000197782|O75290-2|ZNF780A	MSMS	A375_MHC_IP_R1	1	559.2046508789062	2	559.283543	1116.55253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.965	1	53.965	53.465	54.465	0								0	0	0	0.15158	1	19252	19252		14.838	0	1		+		33164	27444	24147	24318	32298	32298					-0.0010815235148129432
LSDALLKTL	9	Unmodified	_LSDALLKTL_					0	0	0			REV__ENSG00000136883|ENST00000640217|KIF12	REV__ENSG00000136883|ENST00000640217|KIF12	MULTI-SECPEP	A375_MHC_IP_R2	2	487.6997985839844	2	487.30005	972.585547	-0.58616	-0.00028563	0.22689	0.00011056	-0.35927	-0.00017507	487.30009779189527	76.715	0.50642	77.455	77.199	77.705	0.74052					13	9	2	0	0	0	0.061442	1	29146	29146		82.529	8.3297	1	1287600	+		33165	18970	24148	24319	32299	32299					0.09815797762871625
LSDAVTGVAI	10	Unmodified	_LSDAVTGVAI_					0	0	0		nc|ENSG00000158296|Q8WWT9-3|SLC13A3;nc|ENSG00000158296|Q8WWT9-5|SLC13A3;nc|ENSG00000158296|Q8WWT9-6|SLC13A3;ENSG00000158296|ENST00000279027|SLC13A3	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	MULTI-MSMS	A375_MHC_IP_R1	1	474.1458740234375	2	473.266207	944.517862	-0.36752	-0.00017393	0.17021	8.0555E-05	-0.19731	-9.3378E-05	473.2662048249016	50.147	0.81841	50.147	49.692	50.51	0					44	15	4	0	0	0	0.079406	1	17645	17645		68.081	6.7232	1	19036000			33166	6300	24149	24320	32300	32300					0.04338347832049294
LSDCEFPHV	9	Unmodified	_LSDCEFPHV_					0	0	0		nc|ENSG00000166024|Q7Z5L2-3|R3HCC1L;nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L;ENSG00000166024|ENST00000298999|R3HCC1L;nc|ENSG00000166024|Q7Z5L2|R3HCC1L	nc|ENSG00000166024|Q7Z5L2-3|R3HCC1L	nc|ENSG00000166024|Q7Z5L2-3|R3HCC1L	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1813354492188	2	523.734217	1045.45388	-0.7536	-0.00039469	0.57789	0.00030266	-0.17571	-9.2027E-05	523.7332965873512	72.097	0.25182	72.831	72.72	72.971	0.73421					6	4	2	0	0	0	0.75466	1	27360	27360		12.532	0.89125	1	477840			33167	7018	24150	24321	32301	32301					-0.06702755596552379
LSDCPCFVLC	10	Unmodified	_LSDCPCFVLC_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|114|1|anti-sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|114|1|anti-sense	MULTI-SECPEP	A375_MHC_IP_R1	1	367.6171875	3	367.15888	1098.45481	0.11925	4.3785E-05	1.1251	0.0004131	1.2444	0.00045688	367.15941263065304	24.501	0.25031	24.501	24.397	24.647	0					5	4	2	0	0	0	0.9269	1	6969	6969		0.62683	0	1	706110	+		33168	26895	24151	24322	32302	32302					-0.09048000543498347
LSDDEEPPDA	10	Unmodified	_LSDDEEPPDA_					0	0	0		nc|ENSG00000176973|Q8N5H3-2|FAM89B;ENST00000449319.2_1_11:65340387-65341109:+|nuORF;nc|ENSG00000176973|Q8N5H3-1|FAM89B;ENSG00000176973|ENST00000530349|FAM89B	nc|ENSG00000176973|Q8N5H3-2|FAM89B	nc|ENSG00000176973|Q8N5H3-2|FAM89B	MULTI-MSMS	A375_MHC_IP_R2	2	544.698974609375	2	544.224933	1086.43531	-1.3727	-0.00074706	1.2264	0.00066744	-0.14629	-7.9617E-05	544.2256289398266	53.457	0.5614	54.208	53.893	54.454	0.75105					15	10	2	0	0	0	0.63639	1	20167	20167		18.146	3.3081	1	4358000			33169	14782	24152	24323	32303	32303					-0.10444638757417124
LSDDHGASWRY	11	Unmodified	_LSDDHGASWRY_					0	0	0		ENST00000480384.1_1_6:31828203-31830565:-|nuORF;ENSG00000204386|ENST00000375631|NEU1	ENST00000480384.1_1_6:31828203-31830565:-|nuORF	ENST00000480384.1_1_6:31828203-31830565:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	436.9423522949219	3	436.198548	1305.57381	-0.16547	-7.218E-05	-0.10988	-4.7931E-05	-0.27536	-0.00012011	436.1984777998719	34.077	0.65862	34.077	33.798	34.456	0					38	12	4	0	0	0	0.37521	1	11145	11145		41.567	27.348	1	31418000			33170	9436	24153	24324	32304	32304					-0.0667505099841037
LSDDHGASWRY	11	Unmodified	_LSDDHGASWRY_					0	0	0		ENST00000480384.1_1_6:31828203-31830565:-|nuORF;ENSG00000204386|ENST00000375631|NEU1	ENST00000480384.1_1_6:31828203-31830565:-|nuORF	ENST00000480384.1_1_6:31828203-31830565:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	654.1937255859375	2	653.794183	1305.57381	-0.42396	-0.00027718	-0.22918	-0.00014984	-0.65315	-0.00042702	653.7939694521075	34.129	0.40453	34.129	33.898	34.303	0					13	7	2	0	0	0	0.52639	1	11209	11209		51.765	37.36	1	4391700			33171	9436	24153	24324	32305	32305					-0.0667505099841037
LSDDHGASWRY	11	Unmodified	_LSDDHGASWRY_					0	0	0		ENST00000480384.1_1_6:31828203-31830565:-|nuORF;ENSG00000204386|ENST00000375631|NEU1	ENST00000480384.1_1_6:31828203-31830565:-|nuORF	ENST00000480384.1_1_6:31828203-31830565:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	654.1931762695312	2	653.794183	1305.57381	-1.1604	-0.00075868	-0.31225	-0.00020415	-1.4727	-0.00096283	653.7939048427979	33.343	0.50768	34.095	33.891	34.399	0.75225					20	9	3	0	0	0	0.10501	1	11958	11958		70.496	56.09	1	3407500			33172	9436	24153	24324	32306	32306					-0.0667505099841037
LSDDHPITY	9	Unmodified	_LSDDHPITY_					0	0	0			REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF	REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	531.462646484375	2	530.750921	1059.48729	-0.54204	-0.00028769	-1.6448	-0.00087299	-2.1869	-0.0011607	530.7501364885572	87.53	0.55521	88.262	88.066	88.621	0.7318					17	10	3	0	0	0	0.75466	1	33336	33336		7.9102	3.1541	1	1529400	+		33173	22815	24154	24325	32307	32307					-0.040074305529969934
LSDDHQARRYL	11	Unmodified	_LSDDHQARRYL_					0	0	0			REV__ENSG00000267508|ENST00000614994|ZNF285	REV__ENSG00000267508|ENST00000614994|ZNF285	MULTI-MSMS	A375_MHC_IP_R1	1	687.7483520507812	2	687.349657	1372.68476	-0.78522	-0.00053972	-0.634	-0.00043578	-1.4192	-0.0009755	687.3491456485823	46.852	0.76994	46.852	46.596	47.366	0					37	14	4	0	0	0	0.56199	1	16434	16434		26.268	1.2772	1	18118000	+		33174	22931	24155	24326	32308	32308					0.013325887096698352
LSDDLHVERY	10	Unmodified	_LSDDLHVERY_					0	0	0		ENSG00000162910|ENST00000336520|MRPL55;nc|ENSG00000162910|Q7Z7F7-2|MRPL55	ENSG00000162910|ENST00000336520|MRPL55	ENSG00000162910|ENST00000336520|MRPL55	MULTI-SECPEP	A375_MHC_IP_R1	1	416.43072509765625	3	416.206932	1245.59897	0.047137	1.9619E-05	0.72727	0.0003027	0.77441	0.00032231	416.54173312968703	39.615	0.40283	39.615	39.391	39.794	0					10	7	2	0	0	0	0.92772	1	13591	13591		7.0371	0	1	990210			33175	6612	24156	24327	32309	32309					-0.014009961958663553
LSDDLHVERY	10	Unmodified	_LSDDLHVERY_					0	0	0		ENSG00000162910|ENST00000336520|MRPL55;nc|ENSG00000162910|Q7Z7F7-2|MRPL55	ENSG00000162910|ENST00000336520|MRPL55	ENSG00000162910|ENST00000336520|MRPL55	MULTI-SECPEP	A375_MHC_IP_R2	2	416.6430969238281	3	416.206932	1245.59897	-0.25949	-0.000108	-0.527	-0.00021934	-0.78649	-0.00032734	416.20675365985954	38.959	0.30684	39.734	39.556	39.863	0.77451					9	5	2	0	0	0	0.91328	1	14367	14367		5.5233	3.2706	1	1351100			33176	6612	24156	24327	32310	32310					-0.014009961958663553
LSDDNCTSNI	10	Unmodified	_LSDDNCTSNI_					0	0	0			REV__LRP1B|p.G4205S|1|0.1|ENSG00000168702|chr2:140321990-140321990|C/T|missense_variant	REV__LRP1B|p.G4205S|1|0.1|ENSG00000168702|chr2:140321990-140321990|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	541.6797485351562	2	541.226953	1080.43935	-0.55743	-0.0003017	-2.7857	-0.0015077	-3.3431	-0.0018094	541.2256341614458	57.087	0.30461	57.087	56.855	57.159	0					9	5	3	0	0	0	0.60556	1	20427	20427		20.454	6.5476	1	1224500	+		33177	26948	24157	24328	32311	32311					-0.09764872535356517
LSDDNCTSNI	10	Unmodified	_LSDDNCTSNI_					0	0	0			REV__LRP1B|p.G4205S|1|0.1|ENSG00000168702|chr2:140321990-140321990|C/T|missense_variant	REV__LRP1B|p.G4205S|1|0.1|ENSG00000168702|chr2:140321990-140321990|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	540.699462890625	2	541.226953	1080.43935	-0.55743	-0.0003017	-2.7857	-0.0015077	-3.3431	-0.0018094	541.2256341614458	57.087	0.30461	57.087	56.855	57.159	0					9	5	3	0	0	0	0.85226	1	20377	20377		10.074	0.72649	1	1224500	+		33178	26948	24157	24328	32312	32312					-0.09764872535356517
LSDDRSNILIY	11	Unmodified	_LSDDRSNILIY_					0	0	0		nc|ENSG00000142892|Q92643-2|PIGK;ENSG00000142892|ENST00000370812|PIGK	nc|ENSG00000142892|Q92643-2|PIGK	nc|ENSG00000142892|Q92643-2|PIGK	MULTI-SECPEP	A375_MHC_IP_R2	2	655.2425537109375	2	654.843342	1307.67213	-0.88325	-0.00057839	0.074704	4.892E-05	-0.80854	-0.00052947	654.8432761023738	75.109	0.35458	75.847	75.772	76.126	0.73752					11	6	2	0	0	0	0.95449	1	28537	28537		20.581	5.7427	1	2503400			33179	5335	24158	24329	32313	32313					0.030601325267753055
LSDDVNHKQW	10	Unmodified	_LSDDVNHKQW_					0	0	0			REV__nc|ENSG00000105426|Q13332-7|PTPRS	REV__nc|ENSG00000105426|Q13332-7|PTPRS	MULTI-SECPEP	A375_MHC_IP_R2	2	414.60955810546875	3	414.53516	1240.58365	-0.02917	-1.2092E-05	-0.021357	-8.8534E-06	-0.050528	-2.0945E-05	414.53513082053666	30.39	0.4569	31.109	30.708	31.165	0.71857					11	8	2	0	0	0	0.92514	1	10624	10624		4.7159	0	1	1817900	+		33180	17382	24159	24330	32314	32314					-0.027018629930580573
LSDFEMQRIH	10	Unmodified	_LSDFEMQRIH_					0	0	0		ENSG00000147606|ENST00000276609|SLC26A7;nc|ENSG00000147606|Q8TE54-2|SLC26A7	ENSG00000147606|ENST00000276609|SLC26A7	ENSG00000147606|ENST00000276609|SLC26A7	MSMS	A375_MHC_IP_R2	2	638.547607421875	2	638.311155	1274.60776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.94	1	126.24	125.74	126.74	0.2951								0	0	0	0.15332	1	49217	49217		10.074	3.3508	1				33181	5696	24160	24331	32315	32315					-0.0185634583101546
LSDFESGLKY	10	Unmodified	_LSDFESGLKY_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	A375_MHC_IP_R1	1	579.6597900390625	2	579.787504	1157.56045	-0.355	-0.00020583	0.75765	0.00043927	0.40264	0.00023345	579.7880501103793	65.924	0.55713	65.924	65.565	66.122	0					31	10	4	0	0	0	0.06997	1	23882	23882		84.522	44.572	1	6994700			33182	3688	24161	24332	32316	32316					-0.012023018303580102
LSDFESGLKY	10	Unmodified	_LSDFESGLKY_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	A375_MHC_IP_R2	2	580.187255859375	2	579.787504	1157.56045	-0.37183	-0.00021558	0.10369	6.012E-05	-0.26814	-0.00015546	579.7875638693401	65.241	0.66029	65.979	65.664	66.324	0.73811					37	12	5	0	0	0	0.15413	1	24713	24713		59.368	30.287	1	5240600			33183	3688	24161	24332	32317	32317					-0.012023018303580102
LSDFFKTHY	9	Unmodified	_LSDFFKTHY_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57100225-57103093:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-SECPEP	A375_MHC_IP_R1	1	386.9258117675781	3	386.525713	1156.55531	0.24295	9.3905E-05	0.080428	3.1087E-05	0.32338	0.00012499	386.5256997043208	57.643	0.45761	57.643	57.415	57.873	0					20	8	3	0	0	0	0.78693	1	20678	20678		9.7643	9.7643	1	3974000			33184	5785	24162	24333	32318	32318					-0.01670560902334728
LSDFFKTHY	9	Unmodified	_LSDFFKTHY_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57100225-57103093:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	A375_MHC_IP_R2	2	386.9253234863281	3	386.525713	1156.55531	-0.57817	-0.00022348	0.39997	0.0001546	-0.1782	-6.888E-05	386.52578967875377	56.785	0.56079	57.535	57.306	57.867	0.75015					27	10	4	0	0	0	0.43945	1	21474	21474		22.775	17.878	1	4718900			33185	5785	24162	24333	32319	32319					-0.01670560902334728
LSDFKYDVP	9	Unmodified	_LSDFKYDVP_					0	0	0		ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	MULTI-MSMS	A375_MHC_IP_R1	1	542.1661987304688	2	542.27149	1082.52843	-0.6231	-0.00033789	-0.20616	-0.00011179	-0.82926	-0.00044968	542.2711387120092	55.037	0.96519	55.037	54.619	55.584	0					29	17	3	0	0	0	0.58047	1	19782	19782		15.847	0	1	7385300			33186	3393	24163	24334	32320	32320					-0.009536695135238915
LSDFQNDPGM	10	Unmodified	_LSDFQNDPGM_					0	0	0		nc|ENSG00000175697|Q8NFN8-2|GPR156;ENSG00000175697|ENST00000464295|GPR156	nc|ENSG00000175697|Q8NFN8-2|GPR156	nc|ENSG00000175697|Q8NFN8-2|GPR156	MSMS	A375_MHC_IP_R1	1	562.2025146484375	2	562.239864	1122.46517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.743	1	94.743	94.243	95.243	0								0	0	0	0.15158	1	34823	34823		14.838	1.3304	1				33187	7975	24164	24335	32321	32321					-0.09115978293061744
LSDFQNDPGM	10	Unmodified	_LSDFQNDPGM_					0	0	0		nc|ENSG00000175697|Q8NFN8-2|GPR156;ENSG00000175697|ENST00000464295|GPR156	nc|ENSG00000175697|Q8NFN8-2|GPR156	nc|ENSG00000175697|Q8NFN8-2|GPR156	MSMS	A375_MHC_IP_R2	2	562.2017822265625	2	562.239864	1122.46517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.826	1	94.571	94.071	95.071	0.74474								0	0	0	0.15332	1	35664	35664		10.074	0	1				33188	7975	24164	24335	32322	32322					-0.09115978293061744
LSDFTILEL	9	Unmodified	_LSDFTILEL_					0	0	0			REV__tr|U7T1K9|U7T1K9_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00852PE=3SV=1	REV__tr|U7T1K9|U7T1K9_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00852PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1890258789062	2	525.789515	1049.56448	-0.40579	-0.00021336	-0.18846	-9.9088E-05	-0.59425	-0.00031245	525.7892761552117	133.21	0.45563	133.37	133.25	133.7	0.16487					10	8	2	0	0	0	0.20567	1	52410	52410		46.021	13.715	1	5576500	+		33189	28701	24165	24336	32323	32323					0.041677876633457345
LSDGPYSNP	9	Unmodified	_LSDGPYSNP_					0	0	0		ENST00000592375.6_1_19:11488662-11489328:-|nuORF;ENSG00000187266|ENST00000222139|EPOR	ENST00000592375.6_1_19:11488662-11489328:-|nuORF	ENST00000592375.6_1_19:11488662-11489328:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	475.6165466308594	2	475.216714	948.418876	-0.42897	-0.00020386	-0.094857	-4.5078E-05	-0.52383	-0.00024893	475.2166541911934	46.367	0.7112	47.133	46.855	47.567	0.76519					18	13	2	0	0	0	0.69507	1	17339	17339		2.9952	2.9952	1	2934600			33190	8819	24166	24337	32324	32324					-0.057396751328496975
LSDGTGRLY	9	Unmodified	_LSDGTGRLY_					0	0	0		ENSG00000120526|ENST00000239690|NUDCD1;nc|ENSG00000120526|Q96RS6-3|NUDCD1;ENST00000519607.5_1_8:110255240-110326067:-|nuORF;nc|ENSG00000120526|Q96RS6-2|NUDCD1	ENSG00000120526|ENST00000239690|NUDCD1	ENSG00000120526|ENST00000239690|NUDCD1	MULTI-SECPEP	A375_MHC_IP_R2	2	491.65338134765625	2	491.253631	980.49271	-0.6553	-0.00032192	0.16479	8.0953E-05	-0.49051	-0.00024097	491.25366589529216	36.053	0.61168	36.817	36.638	37.25	0.76338					21	11	3	0	0	0	0.37663	1	13139	13139		29.841	0	1	4961600			33191	3667	24167	24338	32325	32325					0.0016829302948053737
LSDHLINQGY	10	Unmodified	_LSDHLINQGY_					0	0	0		nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9;ENST00000488738.5_1_20:61595350-61598131:+|nuORF	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MULTI-SECPEP	A375_MHC_IP_R1	1	580.6909790039062	2	580.290745	1158.56694	-0.22866	-0.00013269	0.27292	0.00015837	0.044256	2.5681E-05	580.2909204169224	50.535	0.81303	50.535	50.153	50.966	0					48	15	5	0	0	0	0.018275	1	17889	17889		110.67	60.742	1	18317000			33192	2270	24168	24339	32326	32326					-0.0060036387899344845
LSDHLINQGY	10	Unmodified	_LSDHLINQGY_					0	0	0		nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9;ENST00000488738.5_1_20:61595350-61598131:+|nuORF	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MULTI-SECPEP	A375_MHC_IP_R2	2	580.6536865234375	2	580.290745	1158.56694	-0.55335	-0.0003211	0.37586	0.00021811	-0.17749	-0.00010299	580.2909579382336	49.795	0.91521	50.55	50.142	51.057	0.75406					44	17	4	0	0	0	0.01722	1	18783	18783		103.42	69.018	1	19954000			33193	2270	24168	24339	32327	32327					-0.0060036387899344845
LSDHVSASF	9	Unmodified	_LSDHVSASF_					0	0	0			REV__FAM135A|p.P59S|1|0.41|ENSG00000082269|chr6:70475427-70475427|C/T|missense_variant	REV__FAM135A|p.P59S|1|0.41|ENSG00000082269|chr6:70475427-70475427|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	482.6663818359375	2	481.732532	961.45051	-0.28954	-0.00013948	0.38911	0.00018745	0.099574	4.7968E-05	481.7326387371662	70.811	0.86997	70.811	70.494	71.364	0					38	16	4	0	0	0	0.43185	1	25804	25804		23.148	6.2061	1	7714700	+		33194	26606	24169	24340	32328	32328					-0.03175682378889633
LSDHVSASF	9	Unmodified	_LSDHVSASF_					0	0	0			REV__FAM135A|p.P59S|1|0.41|ENSG00000082269|chr6:70475427-70475427|C/T|missense_variant	REV__FAM135A|p.P59S|1|0.41|ENSG00000082269|chr6:70475427-70475427|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	482.6663513183594	2	481.732532	961.45051	-0.51131	-0.00024631	-0.020452	-9.8525E-06	-0.53176	-0.00025617	481.7324599226355	70.171	0.96487	70.905	70.437	71.402	0.73421					39	18	4	0	0	0	0.43185	1	26591	26591		23.148	5.0134	1	9351200	+		33195	26606	24169	24340	32329	32329					-0.03175682378889633
LSDIASALRY	10	Unmodified	_LSDIASALRY_					0	0	0		nc|ENSG00000104365|O14920-3|IKBKB;ENST00000518647.5_1_8:42129618-42174557:+|nuORF;ENST00000520201.5_1_8:42129679-42177019:+|nuORF;nc|ENSG00000104365|O14920-4|IKBKB;nc|ENSG00000104365|O14920-2|IKBKB;ENSG00000104365|ENST00000520810|IKBKB	nc|ENSG00000104365|O14920-3|IKBKB	nc|ENSG00000104365|O14920-3|IKBKB	MULTI-MSMS	A375_MHC_IP_R1	1	554.7061767578125	2	554.803488	1107.59242	-0.60371	-0.00033494	1.3512	0.00074964	0.74747	0.0004147	554.8039514031491	76.222	0.50546	76.222	75.915	76.421	0					23	9	3	0	0	0	0.12083	1	27744	27744		75.571	24.155	1	5454500			33196	2503	24170	24341	32330	32330					0.0429311064342528
LSDIASALRY	10	Unmodified	_LSDIASALRY_					0	0	0		nc|ENSG00000104365|O14920-3|IKBKB;ENST00000518647.5_1_8:42129618-42174557:+|nuORF;ENST00000520201.5_1_8:42129679-42177019:+|nuORF;nc|ENSG00000104365|O14920-4|IKBKB;nc|ENSG00000104365|O14920-2|IKBKB;ENSG00000104365|ENST00000520810|IKBKB	nc|ENSG00000104365|O14920-3|IKBKB	nc|ENSG00000104365|O14920-3|IKBKB	MULTI-MSMS	A375_MHC_IP_R2	2	554.0780639648438	2	554.803488	1107.59242	-0.79894	-0.00044326	1.3691	0.00075955	0.57011	0.0003163	554.8039925773711	75.376	0.71236	76.117	75.724	76.436	0.74052					29	13	3	0	0	0	0.27023	1	28665	28665		55.235	9.535	1	5455400			33197	2503	24170	24341	32331	32331					0.0429311064342528
LSDIGSGIRY	10	Unmodified	_LSDIGSGIRY_					0	0	0		ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	MULTI-SECPEP	A375_MHC_IP_R1	1	541.1873168945312	2	540.787838	1079.56112	-0.64872	-0.00035082	-0.21843	-0.00011812	-0.86715	-0.00046894	540.7877679246928	55.101	1.0189	55.101	54.771	55.79	0					51	19	5	0	0	0	0.015081	1	19659	19659		143.91	26.149	1	76725000			33198	9563	24171	24342	32332	32332					0.024525376093379236
LSDIGSGIRY	10	Unmodified	_LSDIGSGIRY_					0	0	0		ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	MULTI-SECPEP	A375_MHC_IP_R2	2	541.1875	2	540.787838	1079.56112	-1.0707	-0.00057902	-0.15833	-8.562E-05	-1.229	-0.00066464	540.7877976846036	54.392	1.0666	55.143	54.814	55.881	0.75075					55	20	4	0	0	0	0.095473	1	20476	20476		87.258	13.059	1	56778000			33199	9563	24171	24342	32333	32333					0.024525376093379236
LSDIGSGIRYL	11	Unmodified	_LSDIGSGIRYL_					0	0	0		ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	MULTI-MSMS	A375_MHC_IP_R1	1	597.728759765625	2	597.32987	1192.64519	-0.24257	-0.0001449	-0.4512	-0.00026951	-0.69377	-0.00041441	597.3299222768353	82.19	0.50785	82.19	81.961	82.469	0					18	9	3	0	0	0	0.50903	1	30052	30052		36.395	9.1718	1	2631600			33200	9563	24172	24343	32334	32334					0.056570687062503566
LSDIGSGIRYL	11	Unmodified	_LSDIGSGIRYL_					0	0	0		ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	MULTI-MSMS	A375_MHC_IP_R2	2	597.7296142578125	2	597.32987	1192.64519	-0.64793	-0.00038703	-0.077779	-4.6459E-05	-0.72571	-0.00043349	597.3300395925901	81.361	0.40188	82.103	81.928	82.33	0.74293					17	7	3	0	0	0	0.46858	1	30907	30907		46.475	6.236	1	3945000			33201	9563	24172	24343	32335	32335					0.056570687062503566
LSDINMDGF	9	Unmodified	_LSDINMDGF_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	MSMS	A375_MHC_IP_R1	1	506.18426513671875	2	506.226225	1010.4379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.115	1	29.115	28.615	29.615	0								0	0	0	0.15486	1	9066	9066		8.5933	0	1				33202	6794	24173	24344	32336	32336					-0.06690461833431982
LSDIRIFGI	9	Unmodified	_LSDIRIFGI_					0	0	0			REV__KMT2B|p.S1734F|2|0.24|ENSG00000272333|chr19:35730541-35730541|C/T|missense_variant	REV__KMT2B|p.S1734F|2|0.24|ENSG00000272333|chr19:35730541-35730541|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	517.262451171875	2	517.305667	1032.59678	-0.42007	-0.0002173	0.056424	2.9188E-05	-0.36364	-0.00018811	517.3055806878683	82.15	0.86131	82.15	81.455	82.316	0					21	16	2	0	0	0	0.4261	1	29806	29806		13.042	2.9685	1	1261800	+		33203	26865	24174	24345	32337	32337					0.08178619856994374
LSDISEFRE	9	Unmodified	_LSDISEFRE_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	A375_MHC_IP_R2	2	548.6822509765625	2	548.269478	1094.5244	-1.1051	-0.0006059	0.32458	0.00017796	-0.78053	-0.00042794	548.2695822520733	56.376	0.40808	57.126	56.948	57.356	0.75015					11	7	2	0	0	0	0.44183	1	21284	21284		22.658	1.1211	1	3300900			33204	3978	24175	24346	32338	32338					-0.019077590072356543
LSDIVIEKY	9	Unmodified	_LSDIVIEKY_					0	0	0		nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27;nc|ENSG00000184465|A2RRH5-2|WDR27;nc|ENSG00000184465|A2RRH5-3|WDR27;ENST00000546953.1_1_6:170072345-170089107:-|nuORF	nc|ENSG00000184465|A2RRH5|WDR27	nc|ENSG00000184465|A2RRH5|WDR27	MULTI-SECPEP	A375_MHC_IP_R1	1	541.0944213867188	2	540.30279	1078.59103	-0.59017	-0.00031887	0.1377	7.4402E-05	-0.45247	-0.00024447	540.3027840951884	63.447	0.81821	63.447	63.069	63.887	0					43	15	4	0	0	0	0.011308	1	22921	22921		128.93	25.513	1	53361000			33205	8587	24176	24347	32339	32339					0.05487476554662862
LSDIVIEKY	9	Unmodified	_LSDIVIEKY_					0	0	0		nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27;nc|ENSG00000184465|A2RRH5-2|WDR27;nc|ENSG00000184465|A2RRH5-3|WDR27;ENST00000546953.1_1_6:170072345-170089107:-|nuORF	nc|ENSG00000184465|A2RRH5|WDR27	nc|ENSG00000184465|A2RRH5|WDR27	MULTI-SECPEP	A375_MHC_IP_R1	1	540.7021484375	2	540.30279	1078.59103	-0.66004	-0.00035662	0.44729	0.00024167	-0.21275	-0.00011495	540.3027648661638	64.27	0.45461	64.27	63.99	64.444	0					15	8	2	0	0	0	0.33896	1	23257	23257		40.239	10.399	1	1554600			33206	8587	24176	24347	32340	32340					0.05487476554662862
LSDIVIEKY	9	Unmodified	_LSDIVIEKY_					0	0	0		nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27;nc|ENSG00000184465|A2RRH5-2|WDR27;nc|ENSG00000184465|A2RRH5-3|WDR27;ENST00000546953.1_1_6:170072345-170089107:-|nuORF	nc|ENSG00000184465|A2RRH5|WDR27	nc|ENSG00000184465|A2RRH5|WDR27	MULTI-SECPEP	A375_MHC_IP_R2	2	540.6429443359375	2	540.30279	1078.59103	-0.87657	-0.00047361	-0.13955	-7.5401E-05	-1.0161	-0.00054901	540.3026407755908	62.677	1.2155	63.419	63.079	64.295	0.74263					59	23	4	0	0	0	0.01083	1	23740	23740		155.95	38.193	1	51386000			33207	8587	24176	24347	32341	32341					0.05487476554662862
LSDIVLLVV	9	Unmodified	_LSDIVLLVV_					0	0	0			REV__ZNF518B|p.Q694Rfs*78|1|0.18|ENSG00000178163|chr4:10444250-10444250|C/-|frameshift_variant	REV__ZNF518B|p.Q694Rfs*78|1|0.18|ENSG00000178163|chr4:10444250-10444250|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	486.2127990722656	2	485.812793	969.611034	-0.67351	-0.0003272	0.53257	0.00025873	-0.14094	-6.8469E-05	485.81298674591704	128.13	0.30551	128.37	128.25	128.55	0.23946					9	5	2	0	0	0	0.16229	1	50328	50328		39.957	0	1	4762200	+		33208	29044	24177	24348	32342	32342					0.12501272285282994
LSDKEKKKI	9	Unmodified	_LSDKEKKKI_					0	0	0		nc|ENSG00000182287|P56377|AP1S2;AP1S2|p.E153Kfs*4|1|0.71|ENSG00000182287|chrX:15827342-15827342|C/-|frameshift_variant;ENSG00000182287|ENST00000672987|AP1S2;nc|ENSG00000182287|P56377-2|AP1S2	nc|ENSG00000182287|P56377|AP1S2	nc|ENSG00000182287|P56377|AP1S2	MSMS	A375_MHC_IP_R1	1	363.59307861328125	3	363.560646	1087.66011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.769	1	24.769	24.269	25.269	0								0	0	0	0.15486	1	7109	7109		6.6304	0.43853	1				33209	154	24178	24349	32343	32343					0.11978560574243602
LSDKFQNFF	9	Unmodified	_LSDKFQNFF_					0	0	0			REV__tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1	REV__tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	572.6917114257812	2	573.284931	1144.55531	-0.18565	-0.00010643	-0.020829	-1.1941E-05	-0.20648	-0.00011837	573.2847956599904	64.515	0.5089	65.255	65.004	65.513	0.74022					14	9	2	0	0	0	0.56537	1	24516	24516		22.736	5.6234	1	1633600	+		33210	28500	24179	24350	32344	32344					-0.011185609023186771
LSDKGGEEL	9	Unmodified	_LSDKGGEEL_					0	0	0			REV__ERICH3|p.L1204*|1|0.25|ENSG00000178965|chr1:74572100-74572100|G/-|frameshift_variant	REV__ERICH3|p.L1204*|1|0.25|ENSG00000178965|chr1:74572100-74572100|G/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	474.135009765625	2	474.237647	946.460741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.151	1	34.151	33.651	34.651	0								0	0	0	0.15283	1	11226	11226		16.942	3.4344	1		+		33211	21528	24180	24351	32345	32345					-0.01463119444304084
LSDKGQLDW	9	Unmodified	_LSDKGQLDW_					0	0	0		ENSG00000156804|ENST00000517956|FBXO32;nc|ENSG00000156804|Q969P5-2|FBXO32;ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENST00000524000.5_1_8:124515615-124518835:-|nuORF	ENSG00000156804|ENST00000517956|FBXO32	ENSG00000156804|ENST00000517956|FBXO32	MULTI-SECPEP	A375_MHC_IP_R1	1	531.1751708984375	2	531.266739	1060.51892	-0.54626	-0.00029021	0.32868	0.00017461	-0.21759	-0.0001156	531.2666056183781	54.675	0.45734	54.675	54.415	54.873	0					17	8	3	0	0	0	0.090157	1	19554	19554		76.825	25.195	1	1726300			33212	6210	24181	24352	32346	32346					-0.008914377990549838
LSDKGQLDW	9	Unmodified	_LSDKGQLDW_					0	0	0		ENSG00000156804|ENST00000517956|FBXO32;nc|ENSG00000156804|Q969P5-2|FBXO32;ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENST00000524000.5_1_8:124515615-124518835:-|nuORF	ENSG00000156804|ENST00000517956|FBXO32	ENSG00000156804|ENST00000517956|FBXO32	MULTI-MSMS	A375_MHC_IP_R2	2	531.17431640625	2	531.266739	1060.51892	-1.0491	-0.00055735	-0.51551	-0.00027388	-1.5646	-0.00083122	531.2665835261245	53.906	0.41071	54.657	54.404	54.815	0.75105					12	7	2	0	0	0	0.10637	1	20371	20371		49.527	13.021	1	997760			33213	6210	24181	24352	32347	32347					-0.008914377990549838
LSDKNIEQY	9	Unmodified	_LSDKNIEQY_					0	0	0		nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	MULTI-MSMS	A375_MHC_IP_R1	1	555.677001953125	2	555.277303	1108.54005	-0.49119	-0.00027275	0.11233	6.2374E-05	-0.37887	-0.00021038	555.27734108055	33.658	0.45425	33.658	33.393	33.848	0					20	8	3	0	0	0	0.012447	1	10984	10984		93.166	35.444	1	12587000			33214	3761	24182	24353	32348	32348					-0.009874724901919762
LSDKNIEQY	9	Unmodified	_LSDKNIEQY_					0	0	0		nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	MULTI-SECPEP	A375_MHC_IP_R2	2	555.677001953125	2	555.277303	1108.54005	-0.86459	-0.00048009	-0.12454	-6.9157E-05	-0.98914	-0.00054925	555.2771792335903	32.978	0.55956	33.715	33.367	33.926	0.73691					22	10	3	0	0	0	0.056023	1	11755	11755		66.457	20.757	1	15215000			33215	3761	24182	24353	32349	32349					-0.009874724901919762
LSDKTYWR	8	Unmodified	_LSDKTYWR_					0	0	0			REV__ENSG00000112303|ENST00000326499|VNN2	REV__ENSG00000112303|ENST00000326499|VNN2	MULTI-SECPEP	A375_MHC_IP_R2	2	534.19775390625	2	534.777274	1067.53999	-1.0977	-0.00058705	-0.82995	-0.00044384	-1.9277	-0.0010309	534.7767445524526	61.602	0.90855	62.347	62.07	62.979	0.74503					28	17	2	0	0	0	0.8824	1	23409	23409		30.225	4.8255	1	3229400	+		33216	17725	24183	24354	32350	32350					0.008925723004722386
LSDLAIQIY	9	Unmodified	_LSDLAIQIY_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-SECPEP	A375_MHC_IP_R1	1	518.1429443359375	2	518.289682	1034.56481	-0.72602	-0.00037629	0.6448	0.0003342	-0.081221	-4.2096E-05	518.2895715803992	84.622	0.45887	84.622	84.341	84.8	0					15	8	2	0	0	0	0.76827	1	30899	30899		3.5965	0	1	3032600			33217	9167	24184	24355	32351	32351					0.048912073832070746
LSDLAIQIY	9	Unmodified	_LSDLAIQIY_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-SECPEP	A375_MHC_IP_R2	2	517.5586547851562	2	518.289682	1034.56481	-0.65339	-0.00033864	-0.36828	-0.00019088	-1.0217	-0.00052952	518.2895382744236	70.171	0.50765	70.905	70.591	71.099	0.73421					15	9	2	0	0	0	0.47368	1	26630	26630		14.838	0	1	1789900			33218	9167	24184	24355	32352	32352					0.048912073832070746
LSDLDSETHI	10	Unmodified	_LSDLDSETHI_					0	0	0		ENST00000437039.1_1_2:179319678-179320041:+|nuORF	ENST00000437039.1_1_2:179319678-179320041:+|nuORF	ENST00000437039.1_1_2:179319678-179320041:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	565.7271728515625	2	565.272218	1128.52988	-0.36112	-0.00020413	0.81012	0.00045794	0.44899	0.0002538	565.2727726996955	57.134	0.61224	57.134	56.956	57.568	0					17	11	2	0	0	0	0.6502	1	20524	20524		17.113	0.96379	1	1272000			33219	11933	24185	24356	32353	32353					-0.029240802154163248
LSDLFGDVKAM	11	Unmodified	_LSDLFGDVKAM_					0	0	0			REV__DNAH9|p.S4145Ffs*44|1|0.38|ENSG00000007174|chr17:11934016-11934016|C/-|frameshift_variant	REV__DNAH9|p.S4145Ffs*44|1|0.38|ENSG00000007174|chr17:11934016-11934016|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	398.9593200683594	3	399.205763	1194.59546	-0.086905	-3.4693E-05	-3.8549	-0.0015389	-3.9418	-0.0015736	399.53824886206655	30.783	0.35172	31.501	31.367	31.719	0.71857					8	6	2	0	0	0	0.73064	1	10855	10855		8.2864	0.44039	1	839420	+		33220	16019	24186	24357	32354	32354					0.0059461770592861285
LSDLFMPPCY	10	Unmodified	_LSDLFMPPCY_					0	0	0			REV__ENSG00000078043|ENST00000585916|PIAS2	REV__ENSG00000078043|ENST00000585916|PIAS2	MULTI-MSMS	A375_MHC_IP_R1	1	593.6943969726562	2	593.269578	1184.5246	-0.6202	-0.00036795	-1.2118	-0.00071891	-1.832	-0.0010869	593.2693139790832	23.843	1.014	23.843	23.533	24.547	0					46	19	4	0	0	0	0.70329	1	6741	6741		10.824	0.67336	1	21031000	+		33221	16702	24187	24358	32355	32355					-0.06027798603258816
LSDLFMPPCY	10	Unmodified	_LSDLFMPPCY_					0	0	0			REV__ENSG00000078043|ENST00000585916|PIAS2	REV__ENSG00000078043|ENST00000585916|PIAS2	MULTI-MSMS	A375_MHC_IP_R2	2	593.6685180664062	2	593.269578	1184.5246	-0.85553	-0.00050756	-1.0951	-0.00064967	-1.9506	-0.0011572	593.2693041302564	23.447	1.0157	24.077	23.777	24.792	0.63014					37	19	3	0	0	0	0.60556	2	7499	7499;7511		20.454	10.38	1	8953400	+		33222	16702	24187	24358	32356;32357	32356					-0.06027798603258816
LSDLFMPPCY	10	Unmodified	_LSDLFMPPCY_					0	0	0			REV__ENSG00000078043|ENST00000585916|PIAS2	REV__ENSG00000078043|ENST00000585916|PIAS2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	593.269578	1184.5246	-0.85553	-0.00050756	-1.0951	-0.00064967	-1.9506	-0.0011572	593.2693041302564	23.447	1.0157	24.077	23.777	24.792	0.63014	0.11709	8.6973E-05	NaN	20.454	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8953400	+		33223	16702	24187	24358							-0.06027798603258816
LSDLFSDDY	9	Unmodified	_LSDLFSDDY_					0	0	0		nc|ENSG00000172216|P17676-2|CEBPB;ENSG00000172216|ENST00000303004|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	MULTI-MSMS	A375_MHC_IP_R1	1	1074.3433837890625	1	1074.4626	1073.45532	0.17894	0.00019226	0.064009	6.8775E-05	0.24294	0.00026103	1074.4624745234541	101.72	0.75921	101.72	101.39	102.15	0					30	14	3	0	0	0	0.41409	2	37509	37506;37509		24.021	9.1823	1	7596000			33224	7691	24188	24359	32358;32359	32359					-0.07846843026800343
LSDLFSDDY	9	Unmodified	_LSDLFSDDY_					0	0	0		nc|ENSG00000172216|P17676-2|CEBPB;ENSG00000172216|ENST00000303004|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	MULTI-MATCH	A375_MHC_IP_R2	2		1	1074.4626	1073.45532	0.20681	0.00022221	0.46942	0.00050437	0.67623	0.00072659	1074.46295486753	101.03	0.66492	101.79	101.5	102.16	0.76428	0.036181	0.00017087	NaN	24.021	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6403500			33225	7691	24188	24359							-0.07846843026800343
LSDLGKLSY	9	Unmodified	_LSDLGKLSY_					0	0	0		nc|ENSG00000103510|Q9H7Z6-2|KAT8;ENSG00000103510|ENST00000219797|KAT8;ENST00000538768.2_1_16:31138259-31142577:+|nuORF	nc|ENSG00000103510|Q9H7Z6-2|KAT8	nc|ENSG00000103510|Q9H7Z6-2|KAT8	MULTI-SECPEP	A375_MHC_IP_R1	1	498.6739807128906	2	498.274032	994.533512	-0.42059	-0.00020957	0.40516	0.00020188	-0.015427	-7.6867E-06	498.2742292602902	59.104	1.22	59.104	58.228	59.448	0					46	23	3	0	0	0	0.011364	1	21236	21236		97.741	47.808	1	18965000			33226	2458	24189	24360	32360	32360					0.03602634349101663
LSDLGKLSY	9	Unmodified	_LSDLGKLSY_					0	0	0		nc|ENSG00000103510|Q9H7Z6-2|KAT8;ENSG00000103510|ENST00000219797|KAT8;ENST00000538768.2_1_16:31138259-31142577:+|nuORF	nc|ENSG00000103510|Q9H7Z6-2|KAT8	nc|ENSG00000103510|Q9H7Z6-2|KAT8	MULTI-SECPEP	A375_MHC_IP_R2	2	498.673828125	2	498.274032	994.533512	-0.82274	-0.00040995	0.47577	0.00023707	-0.34697	-0.00017288	498.2742197833683	58.36	1.4217	59.109	58.12	59.542	0.74894					52	27	4	0	0	0	0.018833	1	22059	22059		97.741	48.214	1	23336000			33227	2458	24189	24360	32361	32361					0.03602634349101663
LSDLGLIKQL	10	Unmodified	_LSDLGLIKQL_					0	0	0			REV__ENST00000512078.5_1_5:59893582-59984814:-|nuORF	REV__ENST00000512078.5_1_5:59893582-59984814:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	550.7394409179688	2	550.339707	1098.66486	-0.70388	-0.00038737	0.42862	0.00023589	-0.27526	-0.00015149	550.339971957799	69.728	0.4091	70.462	70.284	70.693	0.73421					18	7	3	0	0	0	0.32288	1	26438	26438		59.368	9.8141	1	3948400	+		33228	16316	24190	24361	32362	32362					0.1194744471699778
LSDLGPPATHS	11	Unmodified	_LSDLGPPATHS_					0	0	0			REV__ENST00000512720.1_1_17:47797256-47797319:+|nuORF	REV__ENST00000512720.1_1_17:47797256-47797319:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	548.1895141601562	2	547.77747	1093.54039	-0.55742	-0.00030534	0.2327	0.00012747	-0.32472	-0.00017787	547.7776199208458	55.151	0.40583	55.151	54.924	55.33	0					12	7	2	0	0	0	0.1581	1	19721	19721		60.074	3.8969	1	1618900	+		33229	25628	24191	24362	32363	32363					-0.0026405277033063612
LSDLHEAVPT	10	Unmodified	_LSDLHEAVPT_					0	0	0		ENSG00000173402|ENST00000308775|DAG1	ENSG00000173402|ENST00000308775|DAG1	ENSG00000173402|ENST00000308775|DAG1	MULTI-SECPEP	A375_MHC_IP_R2	2	541.6614379882812	2	541.279846	1080.54514	-1.1105	-0.00060107	-0.20668	-0.00011187	-1.3171	-0.00071295	541.7808198276767	57.801	0.45395	58.55	58.375	58.829	0.74894					11	8	2	0	0	0	0.6774	1	21932	21932		27.629	8.2669	1	1196600			33230	7795	24192	24363	32364	32364					0.008088313724329055
LSDLHSKYSVV	11	Unmodified	_LSDLHSKYSVV_					0	0	0		ENSG00000167880|ENST00000301607|EVPL;EVPL|p.L1944Sfs*20|1|0.58|ENSG00000167880|chr17:76007376-76007376|C/-|frameshift_variant;EVPL|p.E1464Gfs*24|1|0.2|ENSG00000167880|chr17:76008799-76008814|TCCAGCTTGACCACTT/-|frameshift_variant	ENSG00000167880|ENST00000301607|EVPL	ENSG00000167880|ENST00000301607|EVPL	MSMS	A375_MHC_IP_R2	2	624.676513671875	2	624.335153	1246.65575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.496	1	62.241	61.741	62.741	0.74503								0	0	0	0.16152	1	23308	23308		10.8	0.72558	1				33231	7232	24193	24364	32365	32365					0.04229051360653102
LSDLKHMRY	9	Unmodified	_LSDLKHMRY_					0	0	0		nc|ENSG00000147874|Q7Z4H7-2|HAUS6;ENSG00000147874|ENST00000380502|HAUS6	nc|ENSG00000147874|Q7Z4H7-2|HAUS6	nc|ENSG00000147874|Q7Z4H7-2|HAUS6	MULTI-SECPEP	A375_MHC_IP_R1	1	388.6059875488281	3	388.206098	1161.59646	0.10441	4.0534E-05	0.09963	3.8677E-05	0.20404	7.9211E-05	388.20623636045036	27.578	0.50553	27.578	27.28	27.786	0					17	9	3	0	0	0	0.32966	1	8384	8384		49.527	27.937	1	5232700			33232	5712	24194	24365	32366	32366					0.022128768654965825
LSDLKHMRY	9	Unmodified	_LSDLKHMRY_					0	0	0		nc|ENSG00000147874|Q7Z4H7-2|HAUS6;ENSG00000147874|ENST00000380502|HAUS6	nc|ENSG00000147874|Q7Z4H7-2|HAUS6	nc|ENSG00000147874|Q7Z4H7-2|HAUS6	MULTI-MSMS	A375_MHC_IP_R2	2	388.6059875488281	3	388.206098	1161.59646	-0.37338	-0.00014495	0.37714	0.00014641	0.0037658	1.4619E-06	388.20623265366663	26.856	0.46055	27.516	27.313	27.773	0.65992					20	8	3	0	0	0	0.10637	1	9124	9124		49.527	34.279	1	4849800			33233	5712	24194	24365	32367	32367					0.022128768654965825
LSDLLDWKY	9	Unmodified	_LSDLLDWKY_					0	0	0		nc|ENSG00000104812|P13807-2|GYS1;ENSG00000104812|ENST00000323798|GYS1	nc|ENSG00000104812|P13807-2|GYS1	nc|ENSG00000104812|P13807-2|GYS1	MULTI-SECPEP	A375_MHC_IP_R1	1	577.200439453125	2	576.800414	1151.58628	-0.01809	-1.0434E-05	-0.31453	-0.00018142	-0.33262	-0.00019186	576.8001389984896	106.11	0.40863	106.11	105.91	106.32	0					14	7	3	0	0	0	0.16595	1	38983	38983		53.404	22.136	1	1833400			33234	2538	24195	24366	32368	32368					0.01654592411887279
LSDLLDWKY	9	Unmodified	_LSDLLDWKY_					0	0	0		nc|ENSG00000104812|P13807-2|GYS1;ENSG00000104812|ENST00000323798|GYS1	nc|ENSG00000104812|P13807-2|GYS1	nc|ENSG00000104812|P13807-2|GYS1	MULTI-SECPEP	A375_MHC_IP_R2	2	577.1998901367188	2	576.800414	1151.58628	-0.13021	-7.5104E-05	-0.75055	-0.00043292	-0.88076	-0.00050802	576.7998219368162	105.28	0.45746	106.05	105.87	106.33	0.76308					15	8	2	0	0	0	0.16595	1	39857	39857		53.404	22.136	1	1337000			33235	2538	24195	24366	32369	32369					0.01654592411887279
LSDLPRNAI	9	Unmodified	_LSDLPRNAI_					0	0	0		FSHR|p.P41L|1|0.25|ENSG00000170820|chr2:49154296-49154296|G/A|missense_variant	FSHR|p.P41L|1|0.25|ENSG00000170820|chr2:49154296-49154296|G/A|missense_variant	FSHR|p.P41L|1|0.25|ENSG00000170820|chr2:49154296-49154296|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	500.1853332519531	2	499.785099	997.555644	-0.37992	-0.00018988	-0.060865	-3.0419E-05	-0.44079	-0.0002203	499.785072979408	74.579	0.8127	74.579	74.197	75.009	0					25	15	2	0	0	0	0.24548	1	27103	27103		36.127	0	1	12452000			33236	14024	24196	24367	32370	32370					0.056768588175032164
LSDLPRNAI	9	Unmodified	_LSDLPRNAI_					0	0	0		FSHR|p.P41L|1|0.25|ENSG00000170820|chr2:49154296-49154296|G/A|missense_variant	FSHR|p.P41L|1|0.25|ENSG00000170820|chr2:49154296-49154296|G/A|missense_variant	FSHR|p.P41L|1|0.25|ENSG00000170820|chr2:49154296-49154296|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	499.67449951171875	2	499.785099	997.555644	-0.52066	-0.00026022	0.02029	1.0141E-05	-0.50038	-0.00025008	499.7850828338942	73.666	0.76392	74.401	74.041	74.805	0.73541					25	14	2	0	0	0	0.12771	1	27994	27994		45.7	1.9272	1	11892000			33237	14024	24196	24367	32371	32371					0.056768588175032164
LSDLSIQIY	9	Unmodified	_LSDLSIQIY_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;ENST00000431872.1_1_9:68357853-68358255:-|nuORF;nc|ENSG00000167306|Q9ULV0-3|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	A375_MHC_IP_R1	1	526.686767578125	2	526.28714	1050.55973	-0.4495	-0.00023657	0.58666	0.00030875	0.13716	7.2185E-05	526.2871348731227	57.364	0.55949	57.364	57.059	57.618	0					17	10	2	0	0	0	0.50702	1	20582	20582		25.399	6.1423	1	1944000			33238	7176	24197	24368	32372	32372					0.036469035205982436
LSDMFLSHY	9	Unmodified	_LSDMFLSHY_					0	0	0		ENST00000584471.5_1_17:65375300-65375444:+|nuORF	ENST00000584471.5_1_17:65375300-65375444:+|nuORF	ENST00000584471.5_1_17:65375300-65375444:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	557.1569213867188	2	556.757692	1111.50083	-0.42482	-0.00023652	-0.2595	-0.00014448	-0.68432	-0.000381	556.7574718318602	82.698	0.55569	82.698	82.418	82.974	0					15	10	2	0	0	0	0.064992	1	30254	30254		58.679	34.658	1	2258500			33239	13706	24198	24369	32373	32373					-0.05045896045385234
LSDMFLSHY	9	Unmodified	_LSDMFLSHY_					0	0	0		ENST00000584471.5_1_17:65375300-65375444:+|nuORF	ENST00000584471.5_1_17:65375300-65375444:+|nuORF	ENST00000584471.5_1_17:65375300-65375444:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	557.1571655273438	2	556.757692	1111.50083	-0.82506	-0.00045936	0.62617	0.00034863	-0.19889	-0.00011073	556.757707928526	81.881	0.50839	82.624	82.381	82.889	0.74294					19	9	3	0	0	0	0.026268	1	31150	31150		78.149	43.748	1	2381800			33240	13706	24198	24369	32374	32374					-0.05045896045385234
LSDMFLSHY	9	Oxidation (M)	_LSDM(Oxidation (M))FLSHY_		LSDM(1)FLSHY		LSDM(44)FLSHY	0	0	1		ENST00000584471.5_1_17:65375300-65375444:+|nuORF	ENST00000584471.5_1_17:65375300-65375444:+|nuORF	ENST00000584471.5_1_17:65375300-65375444:+|nuORF	MSMS	A375_MHC_IP_R2	2	564.6719970703125	2	564.755149	1127.49575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.305	1	67.041	66.541	67.541	0.73631								0	0	0	0.092288	1	25126	25126		43.858	18.459	1				33241	13706	24198	24370	32375	32375		466			-0.06290199908016803
LSDMNEATIQ	10	Unmodified	_LSDMNEATIQ_					0	0	0			REV__nc|ENSG00000157077|O95405-2|ZFYVE9	REV__nc|ENSG00000157077|O95405-2|ZFYVE9	MULTI-MSMS	A375_MHC_IP_R1	1	561.6597900390625	2	561.260796	1120.50704	0.035413	1.9876E-05	-1.3453	-0.00075506	-1.3099	-0.00073518	561.260026063265	113.74	0.71313	113.74	113.24	113.95	0					18	13	2	0	0	0	0.25355	1	41707	41707		43.772	5.5968	1	2918900	+		33242	20009	24199	24371	32376	32376					-0.04839422604527499
LSDMSQEW	8	Unmodified	_LSDMSQEW_					0	0	0		ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000150893|Q5SZK8-2|FREM2	ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	MSMS	A375_MHC_IP_R1	1	498.1769714355469	2	498.210575	994.406597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.337	1	59.337	58.837	59.837	0								0	0	0	0.16876	1	21341	21341		12.532	1.4171	1				33243	5867	24200	24372	32377	32377					-0.09083034867535389
LSDNELLLK	9	Unmodified	_LSDNELLLK_					0	0	0			REV__nc|ENSG00000137831|Q9BZF9-2|UACA	REV__nc|ENSG00000137831|Q9BZF9-2|UACA	MULTI-SECPEP	A375_MHC_IP_R1	1	523.2000122070312	2	522.800414	1043.58628	-0.53282	-0.00027856	0.74062	0.00038719	0.2078	0.00010864	522.8004246738109	75.999	1.0099	75.999	75.714	76.724	0					31	19	3	0	0	0	0.11849	1	27664	27664		61.602	0	1	5540400	+		33244	19041	24201	24373	32378	32378					0.06622592411895312
LSDNIQQY	8	Unmodified	_LSDNIQQY_					0	0	0		ENSG00000135249|ENST00000257700|RINT1	ENSG00000135249|ENST00000257700|RINT1	ENSG00000135249|ENST00000257700|RINT1	MULTI-MSMS	A375_MHC_IP_R1	1	490.6820068359375	2	490.737814	979.461075	0.1944	9.54E-05	-0.39962	-0.00019611	-0.20522	-0.00010071	490.73765425185707	49.191	0.60833	49.191	48.831	49.439	0					15	11	2	0	0	0	0.7338	1	17339	17339		24.674	1.9376	1	1337700			33245	4659	24202	24374	32379	32379					-0.029476997244614722
LSDPAAGAY	9	Unmodified	_LSDPAAGAY_					0	0	0		nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS;ENST00000557589.1_1_12:56815505-56817595:-|nuORF	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-MSMS	A375_MHC_IP_R2	2	864.8095703125	1	864.409774	863.402498	-0.5064	-0.00043774	-0.015526	-1.3421E-05	-0.52193	-0.00045116	864.4096899995147	46.23	0.55839	46.995	46.755	47.313	0.76518					15	10	2	0	0	0	0.4867	1	17419	17419		20.454	12.543	1	3221000			33246	3000	24203	24375	32380	32380					-0.03466756298951168
LSDPAAGAY	9	Unmodified	_LSDPAAGAY_					0	0	0		nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS;ENST00000557589.1_1_12:56815505-56817595:-|nuORF	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-MATCH	A375_MHC_IP_R1	1		1	864.409774	863.402498	-0.45495	-0.00039327	0.23963	0.00020714	-0.21533	-0.00018613	864.4099170282805	46.908	0.56385	46.908	46.647	47.211	0	-0.043292	0.00013385	NaN	20.454	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2816000			33247	3000	24203	24375							-0.03466756298951168
LSDPDEVARRW	11	Unmodified	_LSDPDEVARRW_					0	0	0		nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-4|ETS1;nc|ENSG00000134954|P14921-2|ETS1	nc|ENSG00000134954|P14921|ETS1	nc|ENSG00000134954|P14921|ETS1	MULTI-SECPEP	A375_MHC_IP_R1	1	448.157470703125	3	448.561597	1342.66296	-0.044944	-2.016E-05	-0.91362	-0.00040981	-0.95856	-0.00042998	448.56133776697556	46.09	0.50687	46.09	45.789	46.295	0					15	9	2	0	0	0	0.99919	1	16198	16198		2.9264	1.4712	1	1783800			33248	14614	24204	24376	32381	32381					0.005337839611001982
LSDPGGRQHWQ	11	Unmodified	_LSDPGGRQHWQ_					0	0	0		CLEC4C|p.R151Q|1|0.14|ENSG00000198178|chr12:7730842-7730842|C/T|missense_variant	CLEC4C|p.R151Q|1|0.14|ENSG00000198178|chr12:7730842-7730842|C/T|missense_variant	CLEC4C|p.R151Q|1|0.14|ENSG00000198178|chr12:7730842-7730842|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	640.9894409179688	2	640.810168	1279.60578	-0.53573	-0.0003433	-0.93054	-0.0005963	-1.4663	-0.0009396	640.8096362900552	70.571	0.51079	70.571	70.289	70.8	0					15	9	2	0	0	0	0.98748	1	25627	25627		8.7454	0	1	2442800			33249	538	24205	24377	32382	32382					-0.02283638524613707
LSDPHTEKAVL	11	Unmodified	_LSDPHTEKAVL_					0	0	0			REV__ENSG00000112981|ENST00000265191|NME5	REV__ENSG00000112981|ENST00000265191|NME5	MULTI-SECPEP	A375_MHC_IP_R2	2	605.7275390625	2	605.327328	1208.6401	-0.51346	-0.00031081	-0.14152	-8.5664E-05	-0.65498	-0.00039647	605.3274877794438	55.649	0.55894	56.399	56.135	56.694	0.75075					22	10	3	0	0	0	0.27744	1	21025	21025		41.956	3.78	1	3125100	+		33250	17762	24206	24378	32383	32383					0.04412764843618788
LSDPRDRRRRY	11	Unmodified	_LSDPRDRRRRY_					0	0	0			REV__ENST00000449684.6_1_2:109237798-109277146:+|nuORF	REV__ENST00000449684.6_1_2:109237798-109277146:+|nuORF	MSMS	A375_MHC_IP_R1	1	745.591064453125	2	745.408372	1488.80219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.995	1	72.995	72.495	73.495	0								0	0	0	0.16307	1	26568	26568		2.7352	1.4057	1		+		33251	24878	24207	24379	32384	32384					0.07734166369118611
LSDPSGPKSY	10	Unmodified	_LSDPSGPKSY_					0	0	0		nc|ENSG00000136643|Q96S38-2|RPS6KC1;ENSG00000136643|ENST00000366960|RPS6KC1	nc|ENSG00000136643|Q96S38-2|RPS6KC1	nc|ENSG00000136643|Q96S38-2|RPS6KC1	MULTI-MSMS	A375_MHC_IP_R1	1	526.1582641601562	2	525.758746	1049.50294	-0.67732	-0.00035611	-0.027572	-1.4496E-05	-0.70489	-0.0003706	525.758708165353	25.791	0.60838	25.791	25.562	26.17	0					31	11	3	0	0	0	3.1676E-05	1	7549	7549		165.58	101.62	1	86811000			33252	4805	24208	24380	32385	32385					-0.01983144035943951
LSDPSGPKSY	10	Unmodified	_LSDPSGPKSY_					0	0	0		nc|ENSG00000136643|Q96S38-2|RPS6KC1;ENSG00000136643|ENST00000366960|RPS6KC1	nc|ENSG00000136643|Q96S38-2|RPS6KC1	nc|ENSG00000136643|Q96S38-2|RPS6KC1	MULTI-MSMS	A375_MHC_IP_R2	2	526.158203125	2	525.758746	1049.50294	-0.91229	-0.00047965	-0.25793	-0.00013561	-1.1702	-0.00061525	525.7585938359557	25.255	0.56	25.898	25.668	26.229	0.64368					20	10	2	0	0	0	3.2977E-05	1	8398	8398		169.92	107.35	1	93243000			33253	4805	24208	24380	32386	32386					-0.01983144035943951
LSDPSLLQLK	10	Unmodified	_LSDPSLLQLK_					0	0	0		ENST00000505338.1_1_12:40224056-40229511:-|nuORF	ENST00000505338.1_1_12:40224056-40229511:-|nuORF	ENST00000505338.1_1_12:40224056-40229511:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	372.30072021484375	3	371.888651	1112.64412	0.25498	9.4823E-05	-2.0204	-0.00075136	-1.7654	-0.00065653	372.2227987496333	64.928	1.1202	64.928	64.393	65.514	0					28	21	2	0	0	0	0.94269	1	23396	23396		3.3196	0	1	8065400			33254	12841	24209	24381	32387	32387					0.0923085433732922
LSDQDVEPV	9	Unmodified	_LSDQDVEPV_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	A375_MHC_IP_R1	1	501.6416015625	2	501.242929	1000.47131	-0.19962	-0.00010006	-1.0487	-0.00052564	-1.2483	-0.00062569	501.24246528812824	72.224	0.96348	72.224	71.815	72.779	0					23	18	2	0	0	0	0.10411	1	26314	26314		49.933	2.1843	1	1852200			33255	14737	24210	24382	32388	32388					-0.028911367898899698
LSDQGHHH	8	Unmodified	_LSDQGHHH_					0	0	0			REV__nc|ENSG00000008441|Q14938-6|NFIX	REV__nc|ENSG00000008441|Q14938-6|NFIX	MULTI-MSMS	A375_MHC_IP_R1	1	465.6866455078125	2	465.712465	929.410377	-0.27602	-0.00012854	0.24489	0.00011405	-0.031123	-1.4494E-05	465.7124563746518	61.362	0.56169	61.362	61.024	61.585	0					18	10	3	0	0	0	0.70206	1	22072	22072		34.102	34.102	1	2686000	+		33256	16174	24211	24383	32389	32389					-0.05715184258804129
LSDQGHHH	8	Unmodified	_LSDQGHHH_					0	0	0			REV__nc|ENSG00000008441|Q14938-6|NFIX	REV__nc|ENSG00000008441|Q14938-6|NFIX	MULTI-SECPEP	A375_MHC_IP_R2	2	466.1124572753906	2	465.712465	929.410377	-0.9455	-0.00044033	0.59054	0.00027502	-0.35496	-0.00016531	465.71266975702747	60.61	0.45744	61.355	61.16	61.618	0.74503					13	8	2	0	0	0	0.86263	1	22957	22957		26.884	26.884	1	2963300	+		33257	16174	24211	24383	32390	32390					-0.05715184258804129
LSDQICPTEV	10	Unmodified	_LSDQICPTEV_					0	0	0			REV__nc|ENSG00000054392|Q5VTY9-6|HHAT	REV__nc|ENSG00000054392|Q5VTY9-6|HHAT	MULTI-SECPEP	A375_MHC_IP_R2	2	553.1896362304688	2	552.765714	1103.51688	-0.75329	-0.00041639	-1.9139	-0.0010579	-2.6672	-0.0014743	552.7642395390325	62.917	0.55483	63.659	63.383	63.938	0.74263					19	10	2	0	0	0	0.76414	1	23932	23932		20.454	3.5113	1	2488800	+		33258	16403	24212	24384	32391	32391					-0.030742345991711773
LSDQRSKHCV	10	Unmodified	_LSDQRSKHCV_					0	0	0		ENST00000312561.8_2_12:32112362-32113746:+|nuORF	ENST00000312561.8_2_12:32112362-32113746:+|nuORF	ENST00000312561.8_2_12:32112362-32113746:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	586.6943969726562	2	586.795672	1171.57679	-0.49838	-0.00029245	1.0443	0.00061276	0.54588	0.00032032	586.7960094507487	63.509	0.40776	64.25	63.936	64.344	0.74022					10	7	2	0	0	0	0.90513	1	24014	24014		4.897	0	1	917310			33259	10635	24213	24385	32392	32392					-0.002134991452749091
LSDRPTLSDPQ	11	Unmodified	_LSDRPTLSDPQ_					0	0	0		PCDHGB3|p.P681L|1|0.3|ENSG00000262209|chr5:141372436-141372436|C/T|missense_variant	PCDHGB3|p.P681L|1|0.3|ENSG00000262209|chr5:141372436-141372436|C/T|missense_variant	PCDHGB3|p.P681L|1|0.3|ENSG00000262209|chr5:141372436-141372436|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	614.81201171875	2	614.812042	1227.60953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.91	1	119.52	119.02	120.02	0.60909								0	0	0	0.16138	1	45219	45219		11.495	1.4208	1				33260	15142	24214	24386	32393	32393					0.0048298645856448275
LSDRQRAIQF	10	Unmodified	_LSDRQRAIQF_					0	0	0		OCRL|p.P881L|1|0.43|ENSG00000122126|chrX:129590206-129590206|C/T|missense_variant	OCRL|p.P881L|1|0.43|ENSG00000122126|chrX:129590206-129590206|C/T|missense_variant	OCRL|p.P881L|1|0.43|ENSG00000122126|chrX:129590206-129590206|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	412.1399841308594	3	411.894799	1232.66257	-0.22535	-9.282E-05	1.4712	0.00060598	1.2458	0.00051316	411.8957108554447	41.565	0.45957	41.565	41.266	41.725	0					17	8	3	0	0	0	0.91556	1	14287	14287		5.7834	1.0675	1	1666100			33261	15043	24215	24387	32394	32394					0.055544090319017414
LSDRQRAIQF	10	Unmodified	_LSDRQRAIQF_					0	0	0		OCRL|p.P881L|1|0.43|ENSG00000122126|chrX:129590206-129590206|C/T|missense_variant	OCRL|p.P881L|1|0.43|ENSG00000122126|chrX:129590206-129590206|C/T|missense_variant	OCRL|p.P881L|1|0.43|ENSG00000122126|chrX:129590206-129590206|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	411.894799	1232.66257	-0.17218	-7.0922E-05	2.0581	0.00084774	1.886	0.00077682	411.8956174631318	40.781	0.50905	41.555	41.285	41.794	0.77451	-0.004797	0.00015749	NaN	5.7834	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2486400			33262	15043	24215	24387							0.055544090319017414
LSDSFSDLY	9	Unmodified	_LSDSFSDLY_					0	0	0		nc|ENSG00000058804|Q9BTX1-4|NDC1;nc|ENSG00000058804|Q9BTX1-3|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	MULTI-MSMS	A375_MHC_IP_R1	1	1046.8680419921875	1	1046.46768	1045.46041	0.21173	0.00022157	0.04775	4.9969E-05	0.25948	0.00027153	1046.4675827134595	97.893	0.76111	97.893	97.59	98.352	0					29	14	3	0	0	0	0.17328	1	36100	36100		39.957	18.211	1	9541000			33263	1298	24216	24388	32395	32395					-0.06050539164152724
LSDTFQSLIR	10	Unmodified	_LSDTFQSLIR_					0	0	0			REV__ARHGEF2|p.S174F|1|0.27|ENSG00000116584|chr1:155965362-155965362|G/A|missense_variant	REV__ARHGEF2|p.S174F|1|0.27|ENSG00000116584|chr1:155965362-155965362|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	394.6361999511719	3	393.883789	1178.62954	0.014114	5.5592E-06	-0.36749	-0.00014475	-0.35338	-0.00013919	393.8835486531986	43.839	0.50994	43.839	43.655	44.165	0					18	9	3	0	0	0	0.93566	1	15322	15322		6.6235	0.75532	1	4621100	+		33264	15442	24217	24389	32396	32396					0.04736782189183941
LSDTHDYRI	9	Unmodified	_LSDTHDYRI_					0	0	0			REV__ENST00000559746.1_1_15:39886299-39886464:+|nuORF	REV__ENST00000559746.1_1_15:39886299-39886464:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	560.6748046875	2	560.275095	1118.53564	-0.67412	-0.00037769	-0.51928	-0.00029094	-1.1934	-0.00066863	560.275022063887	41.749	0.46008	42.523	42.249	42.709	0.77451					21	8	3	0	0	0	0.75164	1	15493	15493		13.906	0	1	3717100	+		33265	26160	24218	24390	32397	32397					-0.01888936913087491
LSDTHDYRI	9	Unmodified	_LSDTHDYRI_					0	0	0			REV__ENST00000559746.1_1_15:39886299-39886464:+|nuORF	REV__ENST00000559746.1_1_15:39886299-39886464:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	560.275095	1118.53564	-0.3524	-0.00019744	0.12242	6.859E-05	-0.22998	-0.00012885	560.2748558432313	42.467	0.45487	42.467	42.183	42.638	0	-0.027988	0.00049024	NaN	13.906	21	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4161100	+		33266	26160	24218	24390							-0.01888936913087491
LSDTKYLEMIY	11	Unmodified	_LSDTKYLEMIY_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	A375_MHC_IP_R1	1	688.744873046875	2	688.344329	1374.6741	-0.54	-0.00037171	0.091314	6.2856E-05	-0.44869	-0.00030885	688.3444492896832	97.514	0.40315	97.514	97.238	97.641	0					15	7	3	0	0	0	0.35749	1	35818	35818		42.312	12.472	1	2486600			33267	9510	24219	24391	32398	32398					0.0017542522036819719
LSDTKYLEMIY	11	Unmodified	_LSDTKYLEMIY_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	A375_MHC_IP_R2	2	688.7445068359375	2	688.344329	1374.6741	-0.81324	-0.00055979	1.37	0.00094305	0.55679	0.00038326	688.3461524495482	96.799	0.60527	97.555	97.268	97.873	0.75587					19	11	3	0	0	0	0.13939	1	36755	36755		63.227	30.922	1	2540600			33268	9510	24219	24391	32399	32399					0.0017542522036819719
LSDTTLMDILP	11	Unmodified	_LSDTTLMDILP_					0	0	0		ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;nc|ENSG00000167716|Q562E7-2|WDR81	ENSG00000167716|ENST00000409644|WDR81	ENSG00000167716|ENST00000409644|WDR81	MULTI-SECPEP	A375_MHC_IP_R1	1	610.2162475585938	2	609.817947	1217.62134	-0.38207	-0.00023299	-3.0432	-0.0018558	-3.4253	-0.0020888	609.8164017278433	64.613	0.86327	64.613	64.343	65.206	0					36	16	4	0	0	0	0.35173	1	23353	23353		53.833	11.993	1	7231300			33269	7216	24220	24392	32400	32400					0.021234671575484754
LSDTVDRLL	9	Unmodified	_LSDTVDRLL_					0	0	0		PPFIA2|p.E669Kfs*20|1|0.33|ENSG00000139220|chr12:81347760-81347760|C/-|frameshift_variant;nc|ENSG00000139220|O75334-5|PPFIA2;nc|ENSG00000139220|O75334-2|PPFIA2;nc|ENSG00000139220|O75334-4|PPFIA2;nc|ENSG00000139220|O75334-3|PPFIA2;ENSG00000139220|ENST00000549396|PPFIA2;PPFIA2|p.E475D|1|0.23|ENSG00000139220|chr12:81368782-81368782|T/A|missense_variant;nc|ENSG00000139220|O75334-7|PPFIA2;nc|ENSG00000139220|O75334-6|PPFIA2;ENSG00000143847|ENST00000295706|PPFIA4;nc|ENSG00000143847|O75335|PPFIA4	PPFIA2|p.E669Kfs*20|1|0.33|ENSG00000139220|chr12:81347760-81347760|C/-|frameshift_variant;ENSG00000143847|ENST00000295706|PPFIA4	ENSG00000143847|ENST00000295706|PPFIA4	MULTI-MSMS	A375_MHC_IP_R1	1	515.7098388671875	2	516.290214	1030.56587	-0.74418	-0.00038421	-0.13445	-6.9415E-05	-0.87863	-0.00045363	516.2900480303185	85.733	0.55883	85.733	85.362	85.921	0					18	10	2	0	0	0	0.29981	1	31358	31358		30.637	2.1497	1	3841400			33270	5441;5061	24221	24393	32401	32401					0.051814217520814054
LSDVFPGVQY	10	Unmodified	_LSDVFPGVQY_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R1	1	563.1838989257812	2	562.784764	1123.55498	-0.20816	-0.00011715	-0.076625	-4.3124E-05	-0.28479	-0.00016027	562.7846043245539	107.3	0.66581	107.3	106.93	107.6	0					29	12	3	0	0	0	0.0062039	1	39344	39344		103.35	72.085	1	6413900			33271	9114	24222	24394	32402	32402					-0.0018598062217733968
LSDVFPGVQY	10	Unmodified	_LSDVFPGVQY_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R2	2	563.1843872070312	2	562.784764	1123.55498	-0.59999	-0.00033767	-0.066686	-3.753E-05	-0.66668	-0.0003752	562.7847110150202	106.56	0.66162	107.32	107.04	107.7	0.75977					30	12	4	0	0	0	0.01165	1	40252	40252		114.65	80.247	1	5996100			33272	9114	24222	24394	32403	32403					-0.0018598062217733968
LSDVFPGVQY	10	Unmodified	_LSDVFPGVQY_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	A375_MHC_IP_R2	2	1124.923583984375	1	1124.56225	1123.55498	0.068348	7.6861E-05	-0.75027	-0.00084373	-0.68192	-0.00076687	1124.5612391048867	106.64	0.40748	107.4	107.14	107.55	0.75977					11	7	2	0	0	0	0.42334	1	40284	40284		51.63	28.894	1	1137400			33273	9114	24222	24394	32404	32404					-0.0018598062217733968
LSDVHNRLLK	10	Unmodified	_LSDVHNRLLK_					0	0	0		ENSG00000103888|ENST00000394685|CEMIP	ENSG00000103888|ENST00000394685|CEMIP	ENSG00000103888|ENST00000394685|CEMIP	MSMS	A375_MHC_IP_R1	1	597.9019775390625	2	597.851304	1193.68806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.48	1	99.48	98.98	99.98	0								0	0	0	0.14983	1	36545	36545		18.146	0	1				33274	2473	24223	24395	32405	32405					0.09895883554327156
LSEAFHEEY	9	Unmodified	_LSEAFHEEY_					0	0	0		nc|ENSG00000048028|Q96RU2-2|USP28;ENST00000540438.5_1_11:113669964-113691034:-|nuORF	nc|ENSG00000048028|Q96RU2-2|USP28	nc|ENSG00000048028|Q96RU2-2|USP28	MULTI-SECPEP	A375_MHC_IP_R1	1	563.148193359375	2	562.748379	1123.4822	-0.33557	-0.00018884	0.15816	8.9005E-05	-0.17741	-9.9837E-05	562.7483466840969	44.147	0.61217	44.147	43.859	44.471	0					22	11	3	0	0	0	0.027983	1	15399	15399		103.75	52.893	1	4317700			33275	14463	24224	24396	32406	32406					-0.07459734415601815
LSEAFHEEY	9	Unmodified	_LSEAFHEEY_					0	0	0		nc|ENSG00000048028|Q96RU2-2|USP28;ENST00000540438.5_1_11:113669964-113691034:-|nuORF	nc|ENSG00000048028|Q96RU2-2|USP28	nc|ENSG00000048028|Q96RU2-2|USP28	MULTI-MSMS	A375_MHC_IP_R2	2	563.148193359375	2	562.748379	1123.4822	-0.40009	-0.00022515	-0.083269	-4.6859E-05	-0.48336	-0.00027201	562.7482530839112	43.422	0.65723	44.195	43.926	44.583	0.7724					17	12	2	0	0	0	0.012968	1	16167	16167		92.491	50.397	1	3451100			33276	14463	24224	24396	32407	32407					-0.07459734415601815
LSEAKKKW	8	Unmodified	_LSEAKKKW_					0	0	0			REV__ENST00000548943.1_1_12:106565027-106566212:+|nuORF	REV__ENST00000548943.1_1_12:106565027-106566212:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	494.6715393066406	2	495.292559	988.570566	-0.18246	-9.0371E-05	0.27714	0.00013727	0.094681	4.6895E-05	495.29255277414205	92.358	0.25285	92.358	92.211	92.463	0					8	4	2	0	0	0	0.95424	1	33944	33944		19.257	9.8739	1	1055900	+		33277	26021	24225	24397	32408	32408					0.07582350685515848
LSEAKKKW	8	Unmodified	_LSEAKKKW_					0	0	0			REV__ENST00000548943.1_1_12:106565027-106566212:+|nuORF	REV__ENST00000548943.1_1_12:106565027-106566212:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	495.292559	988.570566	-0.38143	-0.00018892	0.011622	5.7563E-06	-0.36981	-0.00018316	495.292561867292	91.427	0.3555	92.162	92.021	92.376	0.7345	-0.098189	-0.00017918	NaN	19.257	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1068500	+		33278	26021	24225	24397							0.07582350685515848
LSEALIQNL	9	Unmodified	_LSEALIQNL_					0	0	0		DIAPH2|p.D982Afs*5|1|0.38|ENSG00000147202|chrX:97348216-97348216|A/-|frameshift_variant;nc|ENSG00000147202|O60879-2|DIAPH2;nc|ENSG00000147202|O60879-3|DIAPH2;ENSG00000147202|ENST00000324765|DIAPH2	DIAPH2|p.D982Afs*5|1|0.38|ENSG00000147202|chrX:97348216-97348216|A/-|frameshift_variant	DIAPH2|p.D982Afs*5|1|0.38|ENSG00000147202|chrX:97348216-97348216|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	501.1871337890625	2	500.787307	999.560061	-0.44585	-0.00022328	0.85089	0.00042612	0.40504	0.00020284	500.7873854214473	109.81	1.683	110.56	110.28	111.97	0.74684					41	32	2	0	0	0	0.16229	1	41458	41458		39.957	18.42	1	2346500			33279	744	24226	24398	32409	32409					0.060263232404167866
LSEAPLESFY	10	Unmodified	_LSEAPLESFY_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2;ENST00000463054.1_1_13:96529939-96547453:-|nuORF	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	A375_MHC_IP_R1	1	577.7080688476562	2	578.282054	1154.54956	-0.18758	-0.00010847	4.4442	0.00257	4.2566	0.0024615	578.2835769765585	55.333	0.55795	55.333	54.924	55.482	0					12	10	2	0	0	0	0.72086	1	19767	19767		30.637	16.73	1	1697700			33280	2385	24227	24399	32410	32410					-0.021537042046475108
LSEASFQEAL	10	Unmodified	_LSEASFQEAL_					0	0	0		nc|ENSG00000023909|P48507-2|GCLM;ENSG00000023909|ENST00000370238|GCLM	nc|ENSG00000023909|P48507-2|GCLM	nc|ENSG00000023909|P48507-2|GCLM	MULTI-SECPEP	A375_MHC_IP_R2	2	547.16357421875	2	547.771854	1093.52915	-0.79876	-0.00043754	0.74145	0.00040614	-0.05731	-3.1393E-05	547.7724969532802	32.064	1.0675	32.801	32.146	33.213	0.73692					40	20	3	0	0	0	0.60238	1	11193	11193		39.95	21.803	1	11672000			33281	1081	24228	24400	32411	32411					-0.01386874864465426
LSEASWEPV	9	Unmodified	_LSEASWEPV_					0	0	0		nc|ENSG00000108389|Q9NYA4|MTMR4;ENSG00000108389|ENST00000682306|MTMR4	nc|ENSG00000108389|Q9NYA4|MTMR4	nc|ENSG00000108389|Q9NYA4|MTMR4	MULTI-SECPEP	A375_MHC_IP_R1	1	508.7103271484375	2	509.248015	1016.48148	-0.36908	-0.00018795	3.0493	0.0015529	2.6802	0.0013649	509.2489383274755	55.695	0.55935	55.695	55.482	56.041	0					13	10	2	0	0	0	0.55359	1	19917	19917		28.487	1.6032	1	707700			33282	2797	24229	24401	32412	32412					-0.0261052906465693
LSEASWEPV	9	Unmodified	_LSEASWEPV_					0	0	0		nc|ENSG00000108389|Q9NYA4|MTMR4;ENSG00000108389|ENST00000682306|MTMR4	nc|ENSG00000108389|Q9NYA4|MTMR4	nc|ENSG00000108389|Q9NYA4|MTMR4	MULTI-SECPEP	A375_MHC_IP_R2	2	508.71002197265625	2	509.248015	1016.48148	-0.89712	-0.00045686	4.1349	0.0021057	3.2378	0.0016488	509.2498091010609	54.988	0.40777	55.738	55.422	55.83	0.75075					12	7	2	0	0	0	0.52144	1	20651	20651		23.148	7.3012	1	1393000			33283	2797	24229	24401	32413	32413					-0.0261052906465693
LSEDVKSYY	9	Unmodified	_LSEDVKSYY_					0	0	0		ENSG00000175354|ENST00000309660|PTPN2;ENST00000423212.1_1_1:178716132-178716684:-|nuORF;nc|ENSG00000175354|P17706-3|PTPN2;nc|ENSG00000175354|P17706-2|PTPN2;nc|ENSG00000175354|P17706-4|PTPN2	ENSG00000175354|ENST00000309660|PTPN2	ENSG00000175354|ENST00000309660|PTPN2	MULTI-SECPEP	A375_MHC_IP_R2	2	552.66650390625	2	552.266404	1102.51826	-0.899	-0.00049649	0.4089	0.00022582	-0.4901	-0.00027066	552.2666846875366	44.973	0.51058	45.742	45.441	45.951	0.7691					16	9	2	0	0	0	0.58126	1	16806	16806		33.445	33.445	1	2273100			33284	7954	24230	24402	32414	32414					-0.0289027723874824
LSEDVRRVI	9	Unmodified	_LSEDVRRVI_					0	0	0		ENSG00000214891|ENST00000617704|TRIM64C	ENSG00000214891|ENST00000617704|TRIM64C	ENSG00000214891|ENST00000617704|TRIM64C	MULTI-SECPEP	A375_MHC_IP_R2	2	544.3896484375	2	543.81693	1085.61931	-0.7415	-0.00040324	-3.2358	-0.0017597	-3.9773	-0.0021629	544.3182668000402	88.792	0.3043	89.524	89.381	89.685	0.7318					6	5	2	0	0	0	0.65246	1	33737	33737		15.847	0	1	907640			33285	9629	24231	24403	32415	32415					0.07992219254629163
LSEDVRYVI	9	Unmodified	_LSEDVRYVI_					0	0	0		ENSG00000204450|ENST00000533122|TRIM64;ENSG00000189253|ENST00000329862|TRIM64B	ENSG00000204450|ENST00000533122|TRIM64	ENSG00000204450|ENST00000533122|TRIM64	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6978759765625	2	547.298039	1092.58152	-0.425	-0.0002326	0.17901	9.7973E-05	-0.24599	-0.00013463	547.2981556409143	81.915	0.60743	81.915	81.657	82.265	0					20	11	2	0	0	0	0.55534	1	29935	29935		27.629	1.3607	1	5350300			33286	8974	24232	24404	32416	32416					0.0389370826915183
LSEDVRYVI	9	Unmodified	_LSEDVRYVI_					0	0	0		ENSG00000204450|ENST00000533122|TRIM64;ENSG00000189253|ENST00000329862|TRIM64B	ENSG00000204450|ENST00000533122|TRIM64	ENSG00000204450|ENST00000533122|TRIM64	MULTI-SECPEP	A375_MHC_IP_R2	2	547.6975708007812	2	547.298039	1092.58152	-0.8896	-0.00048688	-0.14269	-7.8095E-05	-1.0323	-0.00056497	547.2980748293605	81.094	0.55803	81.839	81.622	82.18	0.74474					25	10	3	0	0	0	0.59614	1	30785	30785		24.021	0	1	5573000			33287	8974	24232	24404	32417	32417					0.0389370826915183
LSEDYEDFY	9	Unmodified	_LSEDYEDFY_					0	0	0		ENST00000462119.5_1_6:111621047-111621194:-|nuORF	ENST00000462119.5_1_6:111621047-111621194:-|nuORF	ENST00000462119.5_1_6:111621047-111621194:-|nuORF	MSMS	A375_MHC_IP_R1	1	590.6637573242188	2	590.737677	1179.4608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.703	1	54.703	54.203	55.203	0								0	0	0	0.15283	1	19544	19544		16.942	3.0362	1				33288	12196	24233	24405	32418	32418					-0.12175164234986369
LSEEDRRLWME	11	Unmodified	_LSEEDRRLWME_					0	0	0		ENSG00000145819|ENST00000645722|ARHGAP26;nc|ENSG00000145819|Q9UNA1|ARHGAP26	ENSG00000145819|ENST00000645722|ARHGAP26	ENSG00000145819|ENST00000645722|ARHGAP26	MSMS	A375_MHC_IP_R2	2	488.4687805175781	3	488.569764	1462.68746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.712	1	62.457	61.957	62.957	0.7446								0	0	0	0.16232	1	23390	23390		6.6235	4.1887	1				33289	5585	24234	24406	32419	32419					-0.025373239476948584
LSEEELERLE	10	Unmodified	_LSEEELERLE_					0	0	0		nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31;ENST00000498612.1_1_19:54622012-54631467:+|nuORF	nc|ENSG00000105618|Q8WWY3-2|PRPF31	nc|ENSG00000105618|Q8WWY3-2|PRPF31	MULTI-MSMS	A375_MHC_IP_R1	1	624.302001953125	2	623.811707	1245.60886	-0.26418	-0.0001648	0.4527	0.0002824	0.18852	0.0001176	623.8122346368365	109.08	0.35492	109.08	108.86	109.22	0					10	6	2	0	0	0	0.71245	1	39987	39987		6.7232	0	1	916670			33290	14526	24235	24407	32420	32420					-0.004118529811194094
LSEEEPDEY	9	Unmodified	_LSEEEPDEY_					0	0	0			REV__TBC1D8B|p.H1004Y|1|0.36|ENSG00000133138|chrX:106873612-106873612|C/T|missense_variant	REV__TBC1D8B|p.H1004Y|1|0.36|ENSG00000133138|chrX:106873612-106873612|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	555.6826782226562	2	555.727309	1109.44006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.118	1	34.118	33.618	34.618	0								0	0	0	0.15486	1	11212	11212		12.532	2.4576	1		+		33291	28084	24236	24408	32421	32421					-0.1102775461465626
LSEEEQEELRR	11	Unmodified	_LSEEEQEELRR_					0	0	0		nc|ENSG00000076554|P55327-3|TPD52;nc|ENSG00000076554|P55327-8|TPD52;nc|ENSG00000076554|P55327-2|TPD52;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52	nc|ENSG00000076554|P55327-3|TPD52	nc|ENSG00000076554|P55327-3|TPD52	MSMS	A375_MHC_IP_R2	2	709.512939453125	2	709.34952	1416.68449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.187	1	58.936	58.436	59.436	0.74894								0	0	0	0.16249	1	22010	22010		5.7319	2.7366	1				33292	14482	24237	24409	32422	32422					-0.007188758008624063
LSEEESENFY	10	Unmodified	_LSEEESENFY_					0	0	0			REV__ENST00000440623.5_1_2:182756982-182781157:+|nuORF	REV__ENST00000440623.5_1_2:182756982-182781157:+|nuORF	MSMS	A375_MHC_IP_R1	1	623.67626953125	2	623.75914	1245.50373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.985	1	67.985	67.485	68.485	0								0	0	0	0.15038	1	24642	24642		17.113	0.96379	1		+		33293	19095	24238	24410	32423	32423					-0.10920394177560411
LSEEGEEEEE	10	Unmodified	_LSEEGEEEEE_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;nc|ENSG00000197653|Q8IVF4-2|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MSMS	A375_MHC_IP_R1	1	590.2061157226562	2	590.230413	1178.44627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.364	1	81.364	80.864	81.864	0								0	0	0	0.15158	1	29732	29732		14.838	0	1				33294	9182	24239	24411	32424	32424					-0.1358128117378783
LSEEKLRKL	9	Unmodified	_LSEEKLRKL_					0	0	0			REV__ENSG00000150627|ENST00000508596|WDR17	REV__ENSG00000150627|ENST00000508596|WDR17	MULTI-MSMS	A375_MHC_IP_R2	2	372.6161193847656	3	372.564279	1114.67101	0.1186	4.4185E-05	-0.21731	-8.0962E-05	-0.098714	-3.6777E-05	372.56417318238516	20.424	0.86459	21.034	20.651	21.516	0.61029					28	16	3	0	0	0	0.69884	1	6461	6461		7.1017	0	1	2310200	+		33295	19717	24240	24412	32425	32425					0.11825962948501001
LSEEMENSSS	10	Unmodified	_LSEEMENSSS_					0	0	0		ENSG00000109787|ENST00000261438|KLF3;nc|ENSG00000109787|P57682-2|KLF3	ENSG00000109787|ENST00000261438|KLF3	ENSG00000109787|ENST00000261438|KLF3	MSMS	A375_MHC_IP_R2	2	556.688720703125	2	556.724243	1111.43393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.245	1	86.978	86.478	87.478	0.733								0	0	0	0.15372	1	32799	32799		8.7454	0.15213	1				33296	2892	24241	24413	32426	32426					-0.11732596117826688
LSEEPLNVW	9	Unmodified	_LSEEPLNVW_					0	0	0			REV__ENSG00000174684|ENST00000311181|B4GAT1	REV__ENSG00000174684|ENST00000311181|B4GAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	363.61712646484375	3	362.853718	1085.53933	0.41447	0.00015039	-0.48717	-0.00017677	-0.072698	-2.6379E-05	362.8534416322863	42.935	0.45675	42.935	42.638	43.095	0					13	8	2	0	0	0	0.75466	1	14828	14828		4.897	0	1	955380	+		33297	21295	24242	24414	32427	32427					-2.2671392343909247E-05
LSEESWGWGF	10	Unmodified	_LSEESWGWGF_					0	0	0			REV__LTR1_dup85|chr7:101629186-101629993:-|2.490429247572933|0.0003248618387484|12.9|470.0|3|1|sense	REV__LTR1_dup85|chr7:101629186-101629993:-|2.490429247572933|0.0003248618387484|12.9|470.0|3|1|sense	MULTI-SECPEP	A375_MHC_IP_R1	1	599.6644287109375	2	599.264196	1196.51384	-0.39299	-0.00023551	0.3758	0.0002252	-0.017197	-1.0305E-05	599.2643786855695	73.852	0.40514	73.852	73.64	74.045	0					12	7	2	0	0	0	0.91556	1	26940	26940		3.2813	0	1	1057600	+		33298	26964	24243	24415	32428	32428					-0.07655741661665161
LSEETTENDDD	11	Unmodified	_LSEETTENDDD_					0	0	0		VAV2|p.P130L|1|0.48|ENSG00000160293|chr9:133834332-133834332|G/A|missense_variant	VAV2|p.P130L|1|0.48|ENSG00000160293|chr9:133834332-133834332|G/A|missense_variant	VAV2|p.P130L|1|0.48|ENSG00000160293|chr9:133834332-133834332|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	634.6869506835938	2	634.244051	1266.47355	-0.57021	-0.00036165	1.255	0.00079596	0.68476	0.00043431	634.2450657402962	56.032	0.65979	56.032	55.635	56.295	0					20	9	3	0	0	0	0.7342	1	20130	20130		4.897	1.3005	1	2457500			33299	30136	24244	24416	32429	32429					-0.14902797633408227
LSEETTENDDD	11	Unmodified	_LSEETTENDDD_					0	0	0		VAV2|p.P130L|1|0.48|ENSG00000160293|chr9:133834332-133834332|G/A|missense_variant	VAV2|p.P130L|1|0.48|ENSG00000160293|chr9:133834332-133834332|G/A|missense_variant	VAV2|p.P130L|1|0.48|ENSG00000160293|chr9:133834332-133834332|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	634.1849365234375	2	634.244051	1266.47355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.495	1	56.246	55.746	56.746	0.75075								0	0	0	0.16203	1	20965	20965		8.1555	0.8663	1				33300	30136	24244	24416	32430	32430					-0.14902797633408227
LSEFDVHEL	9	Unmodified	_LSEFDVHEL_					0	0	0			REV__nc|ENSG00000146966|Q9ULE3-2|DENND2A	REV__nc|ENSG00000146966|Q9ULE3-2|DENND2A	MSMS	A375_MHC_IP_R2	2	544.6919555664062	2	544.766571	1087.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.774	1	79.519	79.019	80.019	0.74474								0	0	0	0.15283	1	29902	29902		16.942	0	1		+		33301	19561	24245	24417	32431	32431					-0.021668575189096373
LSEGVTISY	9	Unmodified	_LSEGVTISY_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-SECPEP	A375_MHC_IP_R1	1	485.1501770019531	2	484.75039	967.486227	-0.28469	-0.000138	-0.39891	-0.00019337	-0.6836	-0.00033137	484.7502272889257	74.081	0.65878	74.081	73.792	74.451	0					21	12	2	0	0	0	0.014271	1	26990	26990		112.59	51.236	1	1856600			33302	5837	24246	24418	32432	32432					0.0011835507810928902
LSEGVTISY	9	Unmodified	_LSEGVTISY_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-SECPEP	A375_MHC_IP_R2	2	485.1500549316406	2	484.75039	967.486227	-0.54406	-0.00026373	0.09233	4.4757E-05	-0.45173	-0.00021898	484.7500888042682	73.439	0.76614	74.174	73.836	74.602	0.73541					35	14	4	0	0	0	0.040439	1	27878	27878		81.613	39.519	1	2966300			33303	5837	24246	24418	32433	32433					0.0011835507810928902
LSEIFPSKL	9	Unmodified	_LSEIFPSKL_					0	0	0		ENSG00000108963|ENST00000263083|DPH1;nc|ENSG00000108963|Q9BZG8-1|DPH1;nc|ENSG00000108963|Q9BZG8-2|DPH1	ENSG00000108963|ENST00000263083|DPH1	ENSG00000108963|ENST00000263083|DPH1	MULTI-MSMS	A375_MHC_IP_R1	1	517.6996459960938	2	517.30005	1032.58555	-0.54321	-0.000281	-0.70233	-0.00036332	-1.2455	-0.00064432	517.2995951187775	99.417	0.55698	99.417	99.067	99.624	0					17	10	2	0	0	0	0.094655	1	36508	36508		51.63	2.1026	1	3080700			33304	2848	24247	24419	32434	32434					0.07055797762859584
LSEIKQPLTA	10	Unmodified	_LSEIKQPLTA_					0	0	0			REV__ENST00000489033.5_1_X:110924556-110931204:+|nuORF	REV__ENST00000489033.5_1_X:110924556-110931204:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	367.6169738769531	3	367.216768	1098.62847	0.084301	3.0957E-05	-0.27775	-0.000102	-0.19345	-7.1039E-05	367.2168568563486	66.239	0.91438	66.239	65.666	66.58	0					34	17	4	0	0	0	0.70925	1	23960	23960		7.4771	3.2876	1	4609400	+		33305	25364	24248	24420	32435	32435					0.08310567820285542
LSEIKQPLTA	10	Unmodified	_LSEIKQPLTA_					0	0	0			REV__ENST00000489033.5_1_X:110924556-110931204:+|nuORF	REV__ENST00000489033.5_1_X:110924556-110931204:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	367.216768	1098.62847	0.084301	3.0957E-05	-0.27775	-0.000102	-0.19345	-7.1039E-05	367.2168568563486	66.239	0.91438	66.239	65.666	66.58	0	0	0	NaN	7.4771	34	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4609400	+		33306	25364	24248	24420							0.08310567820285542
LSEINKPNFY	10	Unmodified	_LSEINKPNFY_					0	0	0		ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	MULTI-MSMS	A375_MHC_IP_R1	1	613.2161865234375	2	612.816596	1223.61864	-0.34508	-0.00021147	-0.74114	-0.00045419	-1.0862	-0.00066566	612.8164844242948	57.746	0.86153	57.746	57.467	58.328	0					44	16	3	0	0	0	0.011756	1	20695	20695		140.63	98.678	1	23889000			33307	1436	24249	24421	32436	32436					0.015773798148984497
LSEINKPNFY	10	Unmodified	_LSEINKPNFY_					0	0	0		ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	MULTI-MSMS	A375_MHC_IP_R2	2	613.2156372070312	2	612.816596	1223.61864	-0.95748	-0.00058676	-0.62879	-0.00038533	-1.5863	-0.00097209	612.8166064261115	56.987	0.81482	57.737	57.51	58.324	0.75015					47	15	5	0	0	0	0.006963	2	21528	21509;21528		152.89	103.33	1	20586000			33308	1436	24249	24421	32437;32438	32438					0.015773798148984497
LSEIWDGDIM	10	Unmodified	_LSEIWDGDIM_					0	0	0			REV__tr|U7STC9|U7STC9_FUSNUPhosphoribosylglycinamideformyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purNPE=3SV=1	REV__tr|U7STC9|U7STC9_FUSNUPhosphoribosylglycinamideformyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purNPE=3SV=1	MSMS	A375_MHC_IP_R1	1	589.7266845703125	2	589.773539	1177.53253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.356	1	55.356	54.856	55.856	0								0	0	0	0.14179	1	19796	19796		29.082	3.6823	1		+		33309	28475	24250	24422	32439	32439					-0.049139480821168036
LSEIWDGDIM	10	Unmodified	_LSEIWDGDIM_					0	0	0			REV__tr|U7STC9|U7STC9_FUSNUPhosphoribosylglycinamideformyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purNPE=3SV=1	REV__tr|U7STC9|U7STC9_FUSNUPhosphoribosylglycinamideformyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purNPE=3SV=1	MSMS	A375_MHC_IP_R2	2	589.7262573242188	2	589.773539	1177.53253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.702	1	55.452	54.952	55.952	0.75075								0	0	0	0.14483	1	20647	20647		27.629	4.8925	1		+		33310	28475	24250	24422	32440	32440					-0.049139480821168036
LSEKCMEAVV	10	Unmodified	_LSEKCMEAVV_					0	0	0		GALNT15|p.G601E|1|0.08|ENSG00000131386|chr3:16227382-16227382|G/A|missense_variant	GALNT15|p.G601E|1|0.08|ENSG00000131386|chr3:16227382-16227382|G/A|missense_variant	GALNT15|p.G601E|1|0.08|ENSG00000131386|chr3:16227382-16227382|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	555.17236328125	2	554.772485	1107.53042	-1.0206	-0.0005662	1.1175	0.00061998	0.096945	5.3783E-05	554.7729883686751	29.409	0.30382	29.409	29.149	29.453	0					9	5	2	0	0	0	0.30287	1	9163	9163		39.95	5.548	1	9104800			33311	14035	24251	24423	32441	32441					-0.019047000915861645
LSEKEIVGQ	9	Unmodified	_LSEKEIVGQ_					0	0	0			REV__nc|ENSG00000084676|Q15788-2|NCOA1	REV__nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-MSMS	A375_MHC_IP_R2	2	501.68438720703125	2	501.776939	1001.53933	-1.0563	-0.00053004	0.31166	0.00015638	-0.74467	-0.00037366	501.7770555720431	52.507	1.0118	53.259	52.78	53.791	0.75225					50	19	4	0	0	0	0.32092	1	19679	19679		29.082	3.6823	1	49858000	+		33312	16826	24252	24424	32442	32442					0.038617328607642776
LSEKGLSYL	9	Unmodified	_LSEKGLSYL_					0	0	0			REV__ENST00000466480.1_1_1:114448336-114454776:+|nuORF	REV__ENST00000466480.1_1_1:114448336-114454776:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	505.6814880371094	2	505.281857	1008.54916	-0.87411	-0.00044167	0.52069	0.00026309	-0.35342	-0.00017858	505.28208548209614	65.594	0.5593	66.333	66.121	66.68	0.73812					18	10	2	0	0	0	0.34064	1	24890	24890		27.629	1.3607	1	1353000	+		33313	18049	24253	24425	32443	32443					0.045229208661339726
LSEKIEKIWHI	11	Unmodified	_LSEKIEKIWHI_					0	0	0			REV__nc|ENSG00000054654|Q8WXH0|SYNE2	REV__nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-SECPEP	A375_MHC_IP_R2	2	465.6860656738281	3	465.938005	1394.79219	-1.0485	-0.00048851	4.0418	0.0018832	2.9934	0.0013947	465.93915277170294	59.035	0.50746	59.782	59.59	60.098	0.74714					11	9	2	0	0	0	0.99606	1	22461	22461		0.45452	0	1	1133100	+		33314	16407	24254	24426	32444	32444					0.11058165591180114
LSEKIPWRY	9	Unmodified	_LSEKIPWRY_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1;REV__ENSG00000198626|ENST00000366574|RYR2	REV__nc|ENSG00000196218|P21817-3|RYR1	MSMS	A375_MHC_IP_R2	2	596.383056640625	2	596.329673	1190.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.39	1	105.15	104.65	105.65	0.76308								0	0	0	0.15486	1	39499	39499		15.847	7.6917	1		+		33315	22171;22389	24255	24427	32445	32445					0.05709693777043867
LSEKLRRELRR	11	Unmodified	_LSEKLRRELRR_					0	0	0			REV__ENSG00000188070|ENST00000433688|ZFTA	REV__ENSG00000188070|ENST00000433688|ZFTA	MSMS	A375_MHC_IP_R1	1	728.8466186523438	2	728.446966	1454.87938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.267	1	86.267	85.767	86.767	0								0	0	0	0.16307	1	31628	31628		2.7352	1.4057	1		+		33316	22071	24256	24428	32446	32446					0.17013384585425229
LSEKLRRELRR	11	Unmodified	_LSEKLRRELRR_					0	0	0			REV__ENSG00000188070|ENST00000433688|ZFTA	REV__ENSG00000188070|ENST00000433688|ZFTA	MSMS	A375_MHC_IP_R1	1	728.4337158203125	2	728.446966	1454.87938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.333	1	86.333	85.833	86.833	0								0	0	0	0.16334	1	31655	31655		1.3295	0	1		+		33317	22071	24256	24428	32447	32447					0.17013384585425229
LSEKPPYSKY	10	Unmodified	_LSEKPPYSKY_					0	0	0		nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2	nc|ENSG00000144824|Q86SQ0-2|PHLDB2	nc|ENSG00000144824|Q86SQ0-2|PHLDB2	MULTI-SECPEP	A375_MHC_IP_R1	1	404.9482727050781	3	404.548406	1210.62339	-0.77583	-0.00031386	0.36408	0.00014729	-0.41175	-0.00016657	404.54853884266697	26.399	0.7109	26.399	26.017	26.728	0					32	13	3	0	0	0	0.76455	1	7887	7887		32.616	16.342	1	9197500			33318	5518	24257	24429	32448	32448					0.026502639576619913
LSEKPPYSKY	10	Unmodified	_LSEKPPYSKY_					0	0	0		nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2	nc|ENSG00000144824|Q86SQ0-2|PHLDB2	nc|ENSG00000144824|Q86SQ0-2|PHLDB2	MULTI-SECPEP	A375_MHC_IP_R2	2	404.9484558105469	3	404.548406	1210.62339	-0.4281	-0.00017319	0.14788	5.9824E-05	-0.28022	-0.00011336	404.5483919241621	25.986	0.71333	26.646	26.194	26.907	0.65992					43	13	4	0	0	0	0.65002	1	8674	8674		35.996	18.947	1	8498600			33319	5518	24257	24429	32449	32449					0.026502639576619913
LSEKREELEKI	11	Unmodified	_LSEKREELEKI_					0	0	0		KCNF1|p.E140K|1|0.38|ENSG00000162975|chr2:10912844-10912844|G/A|missense_variant	KCNF1|p.E140K|1|0.38|ENSG00000162975|chr2:10912844-10912844|G/A|missense_variant	KCNF1|p.E140K|1|0.38|ENSG00000162975|chr2:10912844-10912844|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	458.99249267578125	3	458.592675	1372.75619	-0.79086	-0.00036268	0.028019	1.2849E-05	-0.76284	-0.00034983	458.59270311871273	56.818	1.1222	57.568	57.306	58.428	0.75015					64	21	5	0	0	0	0.9836	1	21781	21781		9.2438	0	1	94527000			33320	14195	24258	24430	32450	32450					0.08472663623660992
LSEKTKQTPN	10	Unmodified	_LSEKTKQTPN_					0	0	0			REV__nc|ENSG00000166278|P06681-3|C2	REV__nc|ENSG00000166278|P06681-3|C2	MULTI-SECPEP	A375_MHC_IP_R2	2	573.6793823242188	2	573.311677	1144.6088	-0.28517	-0.00016349	-2.235	-0.0012814	-2.5202	-0.0014449	573.8117060526022	106.54	0.50924	107.3	106.99	107.5	0.75977					18	9	3	0	0	0	0.83355	1	40313	40313		17.113	0	1	1287700	+		33321	20666	24259	24431	32451	32451					0.0422819180953411
LSEKWTRCERY	11	Unmodified	_LSEKWTRCERY_					0	0	0			REV__SLC43A3|p.P487L|1|0.33|ENSG00000134802|chr11:57407808-57407808|G/A|missense_variant	REV__SLC43A3|p.P487L|1|0.33|ENSG00000134802|chr11:57407808-57407808|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	490.67919921875	3	490.910121	1469.70853	0.12728	6.2483E-05	-3.5046	-0.0017205	-3.3773	-0.001658	491.2438094461058	38.878	0.15217	38.878	38.78	38.933	0					4	2	2	0	0	0	0.99847	1	13252	13252		2.8433	0	1	656910	+		33322	27996	24260	24432	32452	32452					-0.007533138481903734
LSELAACYMGT	11	Unmodified	_LSELAACYMGT_					0	0	0			REV__IL13|p.A74T|1|0.12|ENSG00000169194|chr5:132659463-132659463|G/A|missense_variant	REV__IL13|p.A74T|1|0.12|ENSG00000169194|chr5:132659463-132659463|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	580.1614990234375	2	579.762117	1157.50968	-0.93568	-0.00054247	-0.72311	-0.00041923	-1.6588	-0.0009617	579.7614807252651	28.726	0.25083	29.425	29.333	29.584	0.69872					6	4	2	0	0	0	0.20809	1	9997	9997		53.833	6.0841	1	4679300	+		33323	26786	24261	24433	32453	32453					-0.06277290471257402
LSELAACYMGT	11	Unmodified	_LSELAACYMGT_					0	0	0			REV__IL13|p.A74T|1|0.12|ENSG00000169194|chr5:132659463-132659463|G/A|missense_variant	REV__IL13|p.A74T|1|0.12|ENSG00000169194|chr5:132659463-132659463|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	579.762117	1157.50968	-0.93568	-0.00054247	-0.72311	-0.00041923	-1.6588	-0.0009617	579.7614807252651	28.726	0.25083	29.425	29.333	29.584	0.69872	0.062762	0.00027969	NaN	53.833	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4679300	+		33324	26786	24261	24433							-0.06277290471257402
LSELAMWKV	9	Unmodified	_LSELAMWKV_					0	0	0			REV__ENSG00000105976|ENST00000397752|MET	REV__ENSG00000105976|ENST00000397752|MET	MULTI-SECPEP	A375_MHC_IP_R2	2	539.1730346679688	2	538.794078	1075.5736	-0.77398	-0.00041701	-4.3446	-0.0023409	-5.1186	-0.0027579	539.2922313679223	78.926	0.3069	79.67	79.489	79.796	0.74474					10	5	3	0	0	0	0.62767	1	29903	29903		11.64	0	1	615340	+		33325	17422	24262	24434	32454	32454					0.03883857747996444
LSELKGTKKK	10	Unmodified	_LSELKGTKKK_					0	0	0		nc|ENSG00000110931|Q96RR4-7|CAMKK2	nc|ENSG00000110931|Q96RR4-7|CAMKK2	nc|ENSG00000110931|Q96RR4-7|CAMKK2	MULTI-MSMS	A375_MHC_IP_R2	2	378.2609558105469	3	377.908046	1130.70231	0.063866	2.4135E-05	-0.40969	-0.00015483	-0.34583	-0.00013069	377.90774377536235	40.42	0.50924	41.194	40.98	41.489	0.77451					15	9	2	0	0	0	0.69726	1	15038	15038		13.519	2.0008	1	2494400			33326	14541	24263	24435	32455	32455					0.14218535982604408
LSELKKRIF	9	Unmodified	_LSELKKRIF_					0	0	0			REV__nc|ENSG00000114805|Q4KWH8-2|PLCH1	REV__nc|ENSG00000114805|Q4KWH8-2|PLCH1	MULTI-MSMS	A375_MHC_IP_R1	1	378.6058044433594	3	378.572886	1132.69683	0.01296	4.9062E-06	0.0086322	3.2679E-06	0.021592	8.1741E-06	378.5729238079545	26.399	0.30363	26.399	26.271	26.575	0					10	5	2	0	0	0	0.70411	1	7838	7838		6.6304	0	1	3338100	+		33327	17842	24264	24436	32456	32456					0.13578857190805138
LSELKKRIF	9	Unmodified	_LSELKKRIF_					0	0	0			REV__nc|ENSG00000114805|Q4KWH8-2|PLCH1	REV__nc|ENSG00000114805|Q4KWH8-2|PLCH1	MULTI-SECPEP	A375_MHC_IP_R1	1	378.972900390625	3	378.572886	1132.69683	0.01296	4.9062E-06	0.0086322	3.2679E-06	0.021592	8.1741E-06	378.5729238079545	26.399	0.30363	26.399	26.271	26.575	0					10	5	2	0	0	0	0.74169	1	7898	7898		7.9454	0	1	3338100	+		33328	17842	24264	24436	32457	32457					0.13578857190805138
LSELKKRIF	9	Unmodified	_LSELKKRIF_					0	0	0			REV__nc|ENSG00000114805|Q4KWH8-2|PLCH1	REV__nc|ENSG00000114805|Q4KWH8-2|PLCH1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	378.572886	1132.69683	-0.33205	-0.00012571	-0.037325	-1.413E-05	-0.36938	-0.00013984	378.5727325183826	25.529	0.2522	26.18	26.034	26.286	0.6503	-0.10948	-3.1114E-05	NaN	6.6304	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1991200	+		33329	17842	24264	24436							0.13578857190805138
LSELKPMSY	9	Unmodified	_LSELKPMSY_					0	0	0		ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	MULTI-MSMS	A375_MHC_IP_R1	1	534.6754150390625	2	534.275718	1066.53688	-0.61882	-0.00033062	0.048931	2.6143E-05	-0.56989	-0.00030448	534.2756935583226	54.726	0.50869	54.726	54.415	54.924	0					17	9	2	0	0	0	0.04093	1	19516	19516		67.838	23.98	1	4104400			33330	5070	24265	24437	32458	32458					0.006275611314549678
LSELKPMSY	9	Unmodified	_LSELKPMSY_					0	0	0		ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	MULTI-MSMS	A375_MHC_IP_R2	2	534.6751098632812	2	534.275718	1066.53688	-1.1877	-0.00063459	-1.4114	-0.00075408	-2.5991	-0.0013887	534.2757260020696	53.892	0.66764	54.643	54.198	54.866	0.75105					25	12	3	0	0	0	0.012447	1	20349	20349		93.166	31.808	1	3889900			33331	5070	24265	24437	32459	32459					0.006275611314549678
LSELKPMSY	9	Oxidation (M)	_LSELKPM(Oxidation (M))SY_		LSELKPM(1)SY		LSELKPM(52)SY	0	0	1		ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	MULTI-SECPEP	A375_MHC_IP_R2	2	542.6728515625	2	542.273175	1082.5318	-1.1101	-0.00060198	0.59599	0.00032319	-0.51412	-0.0002788	542.2733981179015	37.65	1.0248	38.424	37.972	38.997	0.77451					27	19	2	0	0	0	0.27742	1	13871	13871		51.63	17.527	1	5292700			33332	5070	24265	24438	32460	32460		270			-0.006167427311766005
LSELLKCLL	9	Unmodified	_LSELLKCLL_					0	0	0		ENST00000306107.9_3_3:105085858-105238971:+|nuORF	ENST00000306107.9_3_3:105085858-105238971:+|nuORF	ENST00000306107.9_3_3:105085858-105238971:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	516.6842651367188	2	516.312103	1030.60965	-0.44827	-0.00023145	4.1116	0.0021228	3.6633	0.0018914	516.3168178827591	82.849	0.15152	82.849	82.772	82.924	0					4	2	2	0	0	0	0.52144	1	30292	30292		16.942	0	1	274820			33333	10574	24266	24439	32461	32461					0.09557314924882121
LSELLWQV	8	Unmodified	_LSELLWQV_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	A375_MHC_IP_R1	1	493.6507873535156	2	494.279118	986.543683	-0.1197	-5.9167E-05	-0.36804	-0.00018191	-0.48774	-0.00024108	494.2790643056522	108.95	0.60872	108.95	108.66	109.27	0					23	11	3	0	0	0	0.93416	1	39871	39871		9.3474	9.3474	1	1555700			33334	3905	24267	24440	32462	32462					0.0498724207432133
LSELQRPYA	9	Unmodified	_LSELQRPYA_					0	0	0			REV__ENSG00000104738|ENST00000649973|MCM4	REV__ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	A375_MHC_IP_R2	2	359.61077880859375	3	359.529346	1075.56621	-0.58071	-0.00020878	-0.034728	-1.2486E-05	-0.61544	-0.00022127	359.5292182887335	24.64	0.8132	25.283	25.06	25.873	0.64368					39	15	3	0	0	0	0.69317	1	8049	8049		7.609	0.50723	1	29319000	+		33335	17335	24268	24441	32463	32463					0.03144841471953441
LSELREFY	8	Unmodified	_LSELREFY_					0	0	0		ENSG00000178904|ENST00000392250|DPY19L3;ENST00000588648.7_1_19:32959648-32972015:+|nuORF;ENST00000590651.1_1_19:32949377-32959920:+|nuORF	ENSG00000178904|ENST00000392250|DPY19L3	ENSG00000178904|ENST00000392250|DPY19L3	MULTI-MSMS	A375_MHC_IP_R1	1	529.2183837890625	2	528.771657	1055.52876	-0.5141	-0.00027184	0.021317	1.1272E-05	-0.49278	-0.00026057	528.7716388316629	57.426	0.60996	57.426	57.059	57.669	0					18	11	2	0	0	0	0.57209	1	20632	20632		46.021	5.7817	1	6769900			33336	8185	24269	24442	32464	32464					0.003217502063534994
LSEMFGYAT	9	Unmodified	_LSEMFGYAT_					0	0	0		tr|U7T3A9|U7T3A9_FUSNUElongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fusAPE=3SV=1	tr|U7T3A9|U7T3A9_FUSNUElongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fusAPE=3SV=1	tr|U7T3A9|U7T3A9_FUSNUElongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fusAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	509.7042541503906	2	509.731143	1017.44773	-0.34018	-0.0001734	-0.54314	-0.00027685	-0.88331	-0.00045025	509.7308107644912	79.316	0.46125	79.316	79.061	79.522	0					14	8	3	0	0	0	0.58047	1	28916	28916		15.847	2.3393	1	1007800			33337	29959	24270	24443	32465	32465					-0.06029273828073656
LSEMFGYAT	9	Unmodified	_LSEMFGYAT_					0	0	0		tr|U7T3A9|U7T3A9_FUSNUElongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fusAPE=3SV=1	tr|U7T3A9|U7T3A9_FUSNUElongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fusAPE=3SV=1	tr|U7T3A9|U7T3A9_FUSNUElongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fusAPE=3SV=1	MSMS	A375_MHC_IP_R2	2	509.69439697265625	2	509.731143	1017.44773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.653	1	79.398	78.898	79.898	0.74474								0	0	0	0.1499	1	29860	29860		21.747	1.293	1				33338	29959	24270	24443	32466	32466					-0.06029273828073656
LSEMLDIAI	9	Unmodified	_LSEMLDIAI_					0	0	0		ENST00000375695.2_1_X:51644997-51645279:+|nuORF	ENST00000375695.2_1_X:51644997-51645279:+|nuORF	ENST00000375695.2_1_X:51644997-51645279:+|nuORF	MSMS	A375_MHC_IP_R1	1	502.7003479003906	2	502.770268	1003.52598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.52	1	103.52	103.02	104.02	0								0	0	0	0.15486	1	38020	38020		12.532	2.3482	1				33339	11274	24271	24444	32467	32467					0.024361587571547716
LSEMVMKLE	9	Unmodified	_LSEMVMKLE_					0	0	0		nc|ENSG00000182923|Q96MT8-4|CEP63;nc|ENSG00000182923|Q96MT8-3|CEP63;nc|ENSG00000182923|Q96MT8-2|CEP63;ENSG00000182923|ENST00000675561|CEP63	nc|ENSG00000182923|Q96MT8-4|CEP63	nc|ENSG00000182923|Q96MT8-4|CEP63	MULTI-SECPEP	A375_MHC_IP_R1	1	540.6769409179688	2	540.277403	1078.54025	-0.3295	-0.00017802	0.16621	8.9801E-05	-0.16328	-8.8219E-05	540.2773215574381	69.998	0.65974	69.998	69.732	70.392	0					22	12	3	0	0	0	0.43207	1	25418	25418		36.127	0	1	2368600			33340	14806	24272	24445	32468	32468					0.004124879137862081
LSENMEIQV	9	Unmodified	_LSENMEIQV_					0	0	0		ENST00000464099.5_1_10:126477706-126480371:-|nuORF	ENST00000464099.5_1_10:126477706-126480371:-|nuORF	ENST00000464099.5_1_10:126477706-126480371:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	532.16845703125	2	531.760432	1061.50631	-1.0434	-0.00055485	-2.7889	-0.001483	-3.8323	-0.0020379	531.758565165891	58.886	0.66012	59.633	59.336	59.996	0.74714					20	12	2	0	0	0	0.4261	1	22420	22420		18.146	0	1	2555300			33341	12221	24273	24446	32469	32469					-0.02198217253612711
LSENQLNKY	9	Unmodified	_LSENQLNKY_					0	0	0		ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	MULTI-SECPEP	A375_MHC_IP_R1	1	555.1975708007812	2	554.785296	1107.55604	-0.6573	-0.00036466	-4.0741	-0.0022602	-4.7314	-0.0026249	554.7847383443733	47.133	0.15604	47.133	47.003	47.159	0					4	2	2	0	0	0	0.60917	1	16521	16521		13.906	5.3128	1	822920			33342	1226	24274	24447	32470	32470					0.006562337467130419
LSENTYHVY	9	Unmodified	_LSENTYHVY_					0	0	0		ENSG00000107719|ENST00000263563|PALD1	ENSG00000107719|ENST00000263563|PALD1	ENSG00000107719|ENST00000263563|PALD1	MULTI-SECPEP	A375_MHC_IP_R1	1	562.6326293945312	2	563.264196	1124.51384	-0.24328	-0.00013703	0.47851	0.00026953	0.23523	0.0001325	563.2646945710867	45.672	0.40597	45.672	45.484	45.89	0					16	7	3	0	0	0	0.74412	1	16024	16024		10.074	0	1	1780600			33343	2751	24275	24448	32471	32471					-0.04343741661659806
LSENWAQEF	9	Unmodified	_LSENWAQEF_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5;ENST00000539304.1_1_12:7344181-7354515:+|nuORF;PEX5|p.A113S|1|0.08|ENSG00000139197|chr12:7191589-7191589|G/T|missense_variant;ENST00000545220.1_1_12:7343495-7354840:+|nuORF	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MSMS	A375_MHC_IP_R2	2	562.1372680664062	2	562.256371	1122.49819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.943	1	86.676	86.176	87.176	0.733								0	0	0	0.15486	1	32683	32683		11.64	2.2572	1				33344	5059	24276	24449	32472	32472					-0.05816028178742272
LSENYQLEV	9	Unmodified	_LSENYQLEV_					0	0	0			REV__ENST00000548316.1_1_12:41903559-41967689:+|nuORF	REV__ENST00000548316.1_1_12:41903559-41967689:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	548.1710205078125	2	547.771854	1093.52915	-0.44115	-0.00024165	-0.41472	-0.00022717	-0.85588	-0.00046883	547.771646956778	43.539	0.45663	43.539	43.3	43.757	0					12	8	2	0	0	0	0.50702	1	15133	15133		25.399	2.663	1	3085400	+		33345	20640	24277	24450	32473	32473					-0.01386874864465426
LSEPDVHGQWK	11	Unmodified	_LSEPDVHGQWK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;TTN|p.L14011*|1|0.26|ENSG00000155657|chr2:178618595-178618595|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R2	2	648.1638793945312	2	648.322576	1294.6306	-1.0477	-0.00067926	-1.1876	-0.00076995	-2.2353	-0.0014492	648.3216611319752	58.919	0.35506	59.666	59.387	59.742	0.74714					11	6	2	0	0	0	0.94168	1	22245	22245		20.415	2.2682	1	1846500			33346	6151;14694	24278	24451	32474	32474					-0.004930034419203366
LSEPEEAAALY	11	Unmodified	_LSEPEEAAALY_					0	0	0		ENSG00000164062|ENST00000296456|APEH;ENST00000463616.1_1_3:49711921-49713416:+|nuORF	ENSG00000164062|ENST00000296456|APEH	ENSG00000164062|ENST00000296456|APEH	MULTI-SECPEP	A375_MHC_IP_R1	1	597.4637451171875	2	596.790244	1191.56593	-0.35218	-0.00021018	0.26143	0.00015602	-0.090754	-5.4161E-05	596.7902808711355	79.538	0.76955	79.538	79.161	79.931	0					42	14	4	0	0	0	0.031929	1	29025	29025		92.491	92.491	1	13781000			33347	6767	24279	24452	32475	32475					-0.02218623038561418
LSEPEEAAALY	11	Unmodified	_LSEPEEAAALY_					0	0	0		ENSG00000164062|ENST00000296456|APEH;ENST00000463616.1_1_3:49711921-49713416:+|nuORF	ENSG00000164062|ENST00000296456|APEH	ENSG00000164062|ENST00000296456|APEH	MULTI-MSMS	A375_MHC_IP_R2	2	597.4637451171875	2	596.790244	1191.56593	-0.4835	-0.00028855	0.13858	8.2706E-05	-0.34491	-0.00020584	596.790228562235	78.868	0.76082	79.613	79.287	80.047	0.74473					39	14	4	0	0	0	0.20809	1	30011	30011		53.833	24.751	1	14675000			33348	6767	24279	24452	32476	32476					-0.02218623038561418
LSEPLPDL	8	Unmodified	_LSEPLPDL_					0	0	0		nc|ENSG00000148219|O75129-2|ASTN2;nc|ENSG00000148219|O75129-3|ASTN2;ENSG00000148219|ENST00000313400|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	MSMS	A375_MHC_IP_R1	1	442.1859130859375	2	442.242201	882.469849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.674	1	91.674	91.174	92.174	0								0	0	0	0.16876	1	33683	33683		18.135	0	1				33349	5725	24280	24453	32477	32477					0.023912739119850812
LSEPQEHRY	9	Unmodified	_LSEPQEHRY_					0	0	0		ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-4|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	387.4970703125	3	386.856122	1157.54654	0.061134	2.365E-05	0.66724	0.00025813	0.72837	0.00028178	386.8562132783705	19.343	0.20283	19.343	19.268	19.471	0					5	3	2	0	0	0	0.73008	1	4712	4712		8.4443	5.7091	1	4092700			33350	1139	24281	24454	32478	32478					-0.025935345388234055
LSEPSSLQY	9	Unmodified	_LSEPSSLQY_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-SECPEP	A375_MHC_IP_R1	1	511.686767578125	2	512.253297	1022.49204	-0.50949	-0.00026099	-0.2091	-0.00010711	-0.71859	-0.0003681	512.2531338625773	61.4	0.97004	61.4	60.973	61.943	0					47	18	4	0	0	0	0.010998	1	22135	22135		126.57	55.432	1	43269000			33351	3128	24282	24455	32479	32479					-0.01830546410246825
LSEPSSLQY	9	Unmodified	_LSEPSSLQY_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-SECPEP	A375_MHC_IP_R2	2	511.61334228515625	2	512.253297	1022.49204	-1.0507	-0.00053824	0.070134	3.5926E-05	-0.98059	-0.00050231	512.2532813688656	60.723	0.9101	61.468	61.16	62.07	0.74503					52	17	4	0	0	0	0.034037	1	23057	23057		99.799	53.778	1	47942000			33352	3128	24282	24455	32480	32480					-0.01830546410246825
LSEPWAFGF	9	Unmodified	_LSEPWAFGF_					0	0	0			REV__ENSG00000174804|ENST00000531380|FZD4	REV__ENSG00000174804|ENST00000531380|FZD4	MULTI-MSMS	A375_MHC_IP_R2	2	527.2081298828125	2	527.255643	1052.49673	-0.43165	-0.00022759	-0.73985	-0.00039009	-1.1715	-0.00061768	527.2548737466338	73.606	0.45919	74.341	74.091	74.551	0.7354					12	8	2	0	0	0	0.55818	1	27868	27868		16.942	0	1	898400	+		33353	21302	24283	24456	32481	32481					-0.027416174767949997
LSEPYSIYTY	10	Unmodified	_LSEPYSIYTY_					0	0	0		nc|ENSG00000139977|Q147X3-2|NAA30;ENSG00000139977|ENST00000556492|NAA30	nc|ENSG00000139977|Q147X3-2|NAA30	nc|ENSG00000139977|Q147X3-2|NAA30	MULTI-SECPEP	A375_MHC_IP_R2	2	411.9411315917969	3	412.532533	1234.57577	-0.18049	-7.4456E-05	-1.7343	-0.00071546	-1.9148	-0.00078991	412.53176126073663	34.601	0.40618	35.364	35.119	35.525	0.76338					11	7	2	0	0	0	0.9269	1	12487	12487		6.1918	0	1	1859300			33354	5120	24284	24457	32482	32482					-0.03213435033171663
LSEQDKVLSNN	11	Unmodified	_LSEQDKVLSNN_					0	0	0			REV__ENSG00000253490.5,LINC02099,chr8,+,I5.1,29791882,29796834|82|18.58|1|intron	REV__ENSG00000253490.5,LINC02099,chr8,+,I5.1,29791882,29796834|82|18.58|1|intron	MULTI-SECPEP	A375_MHC_IP_R1	1	623.258544921875	2	623.817324	1245.62009	-0.40761	-0.00025427	-0.68728	-0.00042874	-1.0949	-0.00068301	623.8169523757381	97.282	0.3028	97.282	97.137	97.44	0					6	5	2	0	0	0	0.8205	1	35720	35720		34.932	14.518	1	550450	+		33355	22853	24285	24458	32483	32483					0.007109691130153806
LSEQLKFQN	9	Unmodified	_LSEQLKFQN_					0	0	0		GCC2|p.N877Sfs*6|1|0.13|ENSG00000135968|chr2:108471956-108471957|AG/-|frameshift_variant;ENSG00000135968|ENST00000309863|GCC2	GCC2|p.N877Sfs*6|1|0.13|ENSG00000135968|chr2:108471956-108471957|AG/-|frameshift_variant	GCC2|p.N877Sfs*6|1|0.13|ENSG00000135968|chr2:108471956-108471957|AG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	369.2889404296875	3	369.532868	1105.57677	0.40928	0.00015124	-0.80292	-0.00029671	-0.39365	-0.00014546	369.5325056017439	43.032	0.91045	43.805	43.523	44.433	0.7724					23	17	2	0	0	0	0.775	1	16160	16160		7.1017	0.90987	1	1423200			33356	4735	24286	24459	32484	32484					0.028208241263882883
LSEQLSKDANS	11	Unmodified	_LSEQLSKDANS_					0	0	0			REV__ENSG00000067900|ENST00000399799|ROCK1	REV__ENSG00000067900|ENST00000399799|ROCK1	MULTI-MSMS	A375_MHC_IP_R1	1	596.7706909179688	2	596.296224	1190.5779	-0.40909	-0.00024394	-3.0785	-0.0018357	-3.4876	-0.0020796	596.7977442534259	99.293	0.25368	99.293	99.117	99.371	0					6	4	2	0	0	0	0.73284	1	36415	36415		6.1918	1.663	1	1189100	+		33357	16536	24287	24460	32485	32485					-0.009770062953748493
LSEQPNGLY	9	Unmodified	_LSEQPNGLY_					0	0	0			REV__ENSG00000171853|ENST00000324266|TRAPPC12	REV__ENSG00000171853|ENST00000324266|TRAPPC12	MULTI-MSMS	A375_MHC_IP_R1	1	511.21331787109375	2	510.753464	1019.49238	-0.36684	-0.00018736	-3.0245	-0.0015448	-3.3913	-0.0017321	510.75331051538024	43.534	1.0699	43.534	43.095	44.165	0					82	20	7	0	0	0	0.41409	1	15318	15318		24.021	0.87215	1	68601000	+		33358	21102	24288	24461	32486	32486					-0.01659126690390167
LSEQYPEW	8	Unmodified	_LSEQYPEW_					0	0	0		ENST00000601004.1_1_19:23567552-23568092:+|nuORF	ENST00000601004.1_1_19:23567552-23568092:+|nuORF	ENST00000601004.1_1_19:23567552-23568092:+|nuORF	MSMS	A375_MHC_IP_R1	1	525.91845703125	2	526.24019	1050.46583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.3	1	104.3	103.8	104.8	0								0	0	0	0.16876	1	38298	38298		12.532	0.89125	1				33359	13870	24289	24462	32487	32487					-0.05738815581730705
LSERAAGEPV	10	Unmodified	_LSERAAGEPV_					0	0	0			REV__nc|ENSG00000136099|O95206-2|PCDH8	REV__nc|ENSG00000136099|O95206-2|PCDH8	MULTI-SECPEP	A375_MHC_IP_R2	2	514.1475830078125	2	514.772188	1027.52982	-0.69404	-0.00035727	-0.67805	-0.00034904	-1.3721	-0.00070632	514.7720930777584	42.594	0.71171	43.367	42.962	43.674	0.7724					20	13	2	0	0	0	0.77204	1	15779	15779		16.149	2.2431	1	1985200	+		33360	18916	24290	24463	32488	32488					0.01715964575214457
LSERAAGEPV	10	Unmodified	_LSERAAGEPV_					0	0	0			REV__nc|ENSG00000136099|O95206-2|PCDH8	REV__nc|ENSG00000136099|O95206-2|PCDH8	MULTI-MATCH	A375_MHC_IP_R1	1		2	514.772188	1027.52982	-0.37589	-0.0001935	-0.18991	-9.776E-05	-0.5658	-0.00029126	514.7720775635643	43.387	0.61142	43.387	43.043	43.655	0	0.0099553	0.00020175	NaN	16.149	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1624400	+		33361	18916	24290	24463							0.01715964575214457
LSERADWQY	9	Unmodified	_LSERADWQY_					0	0	0		ENSG00000136379|ENST00000258884|ABHD17C;nc|ENSG00000136379|Q6PCB6-2|ABHD17C;ENSG00000107362|ENST00000333421|ABHD17B;nc|ENSG00000107362|Q5VST6-2|ABHD17B	ENSG00000136379|ENST00000258884|ABHD17C;ENSG00000107362|ENST00000333421|ABHD17B	ENSG00000136379|ENST00000258884|ABHD17C	MULTI-MSMS	A375_MHC_IP_R1	1	584.675048828125	2	584.275095	1166.53564	0.024536	1.4336E-05	-0.54424	-0.00031799	-0.5197	-0.00030365	584.2749224821611	48.096	1.9299	48.096	46.952	48.882	0					85	37	4	0	0	0	0.012447	2	16870	16870;17030		93.166	61.898	1	142580000			33362	4783;2736	24291	24464	32489;32490	32489					-0.040969369131062194
LSERADWQY	9	Unmodified	_LSERADWQY_					0	0	0		ENSG00000136379|ENST00000258884|ABHD17C;nc|ENSG00000136379|Q6PCB6-2|ABHD17C;ENSG00000107362|ENST00000333421|ABHD17B;nc|ENSG00000107362|Q5VST6-2|ABHD17B	ENSG00000136379|ENST00000258884|ABHD17C;ENSG00000107362|ENST00000333421|ABHD17B	ENSG00000136379|ENST00000258884|ABHD17C	MULTI-MSMS	A375_MHC_IP_R2	2	584.6748657226562	2	584.275095	1166.53564	-0.29391	-0.00017173	-0.12652	-7.3923E-05	-0.42043	-0.00024565	584.2750472826682	47.438	1.32	48.2	47.613	48.933	0.76128					76	25	4	0	0	0	0.017012	3	17711	17711;17913;17936		87.258	55.99	1	138320000			33363	4783;2736	24291	24464	32491;32492;32493	32491					-0.040969369131062194
LSERDQSDQ	9	Unmodified	_LSERDQSDQ_					0	0	0			REV__ZNF311|p.P127S|1|0.22|ENSG00000197935|chr6:28998770-28998770|G/A|missense_variant	REV__ZNF311|p.P127S|1|0.22|ENSG00000197935|chr6:28998770-28998770|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	540.2212524414062	2	539.243992	1076.47343	-1.1928	-0.00064324	-0.80678	-0.00043505	-1.9996	-0.0010783	539.2435741746989	60.082	0.50638	60.829	60.45	60.957	0.74714					19	9	3	0	0	0	0.70886	1	22671	22671		6.2058	6.2058	1	2863000	+		33364	29036	24292	24465	32494	32494					-0.06174708052094502
LSERGWLL	8	Unmodified	_LSERGWLL_					0	0	0		ENST00000344111.3_1_7:1007829-1008150:-|nuORF	ENST00000344111.3_1_7:1007829-1008150:-|nuORF	ENST00000344111.3_1_7:1007829-1008150:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	487.6763916015625	2	487.276909	972.539266	-0.25223	-0.0001229	-0.51468	-0.00025079	-0.7669	-0.00037369	487.27658280612104	59.473	0.55799	59.473	59.194	59.752	0					16	10	2	0	0	0	0.87643	1	21398	21398		32.305	0	1	3422400			33365	10892	24293	24466	32495	32495					0.0518977765142381
LSERLFVKT	9	Unmodified	_LSERLFVKT_					0	0	0			REV__ENSG00000145555|ENST00000513610|MYO10	REV__ENSG00000145555|ENST00000513610|MYO10	MULTI-SECPEP	A375_MHC_IP_R1	1	365.2852783203125	3	364.885241	1091.63389	0.18797	6.8586E-05	-0.12411	-4.5287E-05	0.063853	2.3299E-05	364.88516947347233	24.928	0.30375	24.928	24.801	25.104	0					6	5	2	0	0	0	0.71341	1	7214	7214		12.873	0.69786	1	5361000	+		33366	19480	24294	24467	32496	32496					0.09174291402769086
LSERLFVKT	9	Unmodified	_LSERLFVKT_					0	0	0			REV__ENSG00000145555|ENST00000513610|MYO10	REV__ENSG00000145555|ENST00000513610|MYO10	MULTI-MATCH	A375_MHC_IP_R2	2		3	364.885241	1091.63389	-0.27098	-9.8875E-05	0.26739	9.7567E-05	-0.0035843	-1.3079E-06	364.8852897986589	24.238	0.2026	24.882	24.755	24.958	0.64368	-0.023054	0.0002863	NaN	12.873	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4761700	+		33367	19480	24294	24467							0.09174291402769086
LSERRLFF	8	Unmodified	_LSERRLFF_					0	0	0		ENSG00000172869|ENST00000539542|DMXL1;nc|ENSG00000172869|Q9Y485|DMXL1	ENSG00000172869|ENST00000539542|DMXL1	ENSG00000172869|ENST00000539542|DMXL1	MSMS	A375_MHC_IP_R2	2	356.60479736328125	3	356.538064	1066.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.271	1	33.008	32.508	33.508	0.73692								0	0	0	0.16876	1	11469	11469		18.146	7.3224	1				33368	7739	24295	24468	32497	32497					0.061731554340894945
LSESACQFVY	10	Unmodified	_LSESACQFVY_					0	0	0			REV__nc|ENSG00000136111|O60343-3|TBC1D4	REV__nc|ENSG00000136111|O60343-3|TBC1D4	MULTI-MSMS	A375_MHC_IP_R2	2	573.6879272460938	2	573.760432	1145.50631	-0.32249	-0.00018503	0.827	0.0004745	0.5045	0.00028946	574.2620227263044	45.231	0.40598	45.996	45.642	46.048	0.76519					11	7	2	0	0	0	0.59108	1	16813	16813		21.537	0	1	561530	+		33369	27243	24296	24469	32498	32498					-0.060622172536113794
LSESACQFVY	10	Unmodified	_LSESACQFVY_					0	0	0			REV__nc|ENSG00000136111|O60343-3|TBC1D4	REV__nc|ENSG00000136111|O60343-3|TBC1D4	MULTI-SECPEP	A375_MHC_IP_R2	2	573.6879272460938	2	573.760432	1145.50631	-0.32249	-0.00018503	0.827	0.0004745	0.5045	0.00028946	574.2620227263044	45.231	0.40598	45.996	45.642	46.048	0.76519					11	7	2	0	0	0	0.8528	1	16813	16813		21.537	0	1	561530	+		33370	27243	24296	24469	32499	32499					-0.060622172536113794
LSESANRIF	9	Unmodified	_LSESANRIF_					0	0	0		ENSG00000180488|ENST00000370791|MIGA1;nc|ENSG00000180488|Q8NAN2|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1739501953125	2	518.774731	1035.53491	-1.0596	-0.00054968	0.10606	5.5022E-05	-0.95352	-0.00049466	518.7743562570471	58.758	0.4057	59.505	59.336	59.742	0.74714					12	7	2	0	0	0	0.50702	1	22310	22310		13.906	0	1	1918300			33371	8301	24297	24470	32500	32500					0.018562684378366612
LSESDDHMY	9	Unmodified	_LSESDDHMY_					0	0	0			REV__ENSG00000164946|ENST00000380880|FREM1	REV__ENSG00000164946|ENST00000380880|FREM1	MULTI-MSMS	A375_MHC_IP_R2	2	549.1159057617188	2	548.716221	1095.41789	-0.80302	-0.00044063	-0.060138	-3.2999E-05	-0.86316	-0.00047363	548.716201770377	67.217	1.1683	67.954	67.393	68.562	0.73631					50	22	3	0	0	0	0.63811	1	25389	25389		12.532	0.29089	1	8502300	+		33372	20533	24298	24471	32501	32501					-0.12600257564054118
LSESDDHMY	9	Unmodified	_LSESDDHMY_					0	0	0			REV__ENSG00000164946|ENST00000380880|FREM1	REV__ENSG00000164946|ENST00000380880|FREM1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	548.716221	1095.41789	-0.90033	-0.00049403	0.51399	0.00028203	-0.38635	-0.00021199	548.716437966757	67.673	1.0678	67.673	67.091	68.159	0	-0.14033	0.00035359	NaN	12.532	50	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7429200	+		33373	20533	24298	24471							-0.12600257564054118
LSESKKNMF	9	Unmodified	_LSESKKNMF_					0	0	0		ENST00000480137.1_1_7:128450376-128461960:+|nuORF;nc|ENSG00000128596|Q96JN2-4|CCDC136	ENST00000480137.1_1_7:128450376-128461960:+|nuORF	ENST00000480137.1_1_7:128450376-128461960:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	541.6564331054688	2	542.278792	1082.54303	-0.57853	-0.00031373	4.1119	0.0022298	3.5333	0.0019161	542.7817185871936	79.592	0.66653	79.592	79.161	79.828	0					15	12	2	0	0	0	0.39388	1	29099	29099		25.399	4.5281	1	628860			33374	12490	24299	24472	32502	32502					0.005060793629809268
LSETLEVFFPD	11	Unmodified	_LSETLEVFFPD_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-6|THADA	REV__nc|ENSG00000115970|Q6YHU6-6|THADA	MSMS	A375_MHC_IP_R2	2	432.93829345703125	3	432.883455	1295.62853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.523	1	39.297	38.797	39.797	0.77451								0	0	0	0.15837	1	14185	14185		8.7518	2.1283	1		+		33375	17926	24300	24473	32503	32503					-0.007454769703599595
LSEVHLDPY	9	Unmodified	_LSEVHLDPY_					0	0	0		nc|ENSG00000137393|Q7Z419-2|RNF144B	nc|ENSG00000137393|Q7Z419-2|RNF144B	nc|ENSG00000137393|Q7Z419-2|RNF144B	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1583251953125	2	536.769114	1071.52368	-0.66865	-0.00035891	1.6417	0.00088119	0.97301	0.00052228	536.7693344413441	79.595	0.76955	79.595	79.214	79.983	0					28	14	3	0	0	0	0.55359	1	29071	29071		28.487	6.9499	1	3865500			33376	14628	24301	24474	32504	32504					-0.00922553656278069
LSEVHLDPY	9	Unmodified	_LSEVHLDPY_					0	0	0		nc|ENSG00000137393|Q7Z419-2|RNF144B	nc|ENSG00000137393|Q7Z419-2|RNF144B	nc|ENSG00000137393|Q7Z419-2|RNF144B	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1580200195312	2	536.769114	1071.52368	-0.80743	-0.0004334	1.2448	0.00066819	0.43741	0.00023479	536.7692172411756	78.736	0.66158	79.481	79.134	79.796	0.74474					29	12	3	0	0	0	0.55359	1	29960	29960		21.747	0	1	3635900			33377	14628	24301	24474	32505	32505					-0.00922553656278069
LSEVIIRFEI	10	Unmodified	_LSEVIIRFEI_					0	0	0		ENST00000411827.1_1_1:22379824-22405029:+|nuORF	ENST00000411827.1_1_1:22379824-22405029:+|nuORF	ENST00000411827.1_1_1:22379824-22405029:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	610.2584838867188	2	609.858264	1217.70197	-0.39698	-0.0002421	1.0818	0.00065975	0.68483	0.00041765	609.8588786762205	67.913	0.4073	68.648	68.409	68.816	0.73511					16	7	3	0	0	0	0.91442	1	25735	25735		7.609	0	1	2497100			33378	11644	24302	24475	32506	32506					0.1018311626276045
LSEVNRTGTQY	11	Unmodified	_LSEVNRTGTQY_					0	0	0		ENSG00000166401|ENST00000397985|SERPINB8;nc|ENSG00000166401|P50452-2|SERPINB8	ENSG00000166401|ENST00000397985|SERPINB8	ENSG00000166401|ENST00000397985|SERPINB8	MULTI-MSMS	A375_MHC_IP_R1	1	634.7169189453125	2	634.317491	1266.62043	-0.99177	-0.0006291	-0.16302	-0.00010341	-1.1548	-0.00073251	634.3173822944563	26.55	1.0603	26.55	26.118	27.179	0					59	20	5	0	0	0	2.3882E-21	1	7906	7906		219.32	151.48	1	151160000			33379	7069	24303	24476	32507	32507					-0.0022161116712595685
LSEVNRTGTQY	11	Unmodified	_LSEVNRTGTQY_					0	0	0		ENSG00000166401|ENST00000397985|SERPINB8;nc|ENSG00000166401|P50452-2|SERPINB8	ENSG00000166401|ENST00000397985|SERPINB8	ENSG00000166401|ENST00000397985|SERPINB8	MULTI-MSMS	A375_MHC_IP_R2	2	634.716796875	2	634.317491	1266.62043	-1.224	-0.00077639	0.094772	6.0115E-05	-1.1292	-0.00071627	634.3175620390087	25.968	0.86426	26.628	26.245	27.109	0.65992					55	16	5	0	0	0	1.7205E-17	1	8735	8735		206.84	139	1	159420000			33380	7069	24303	24476	32508	32508					-0.0022161116712595685
LSEVPVDLPD	10	Unmodified	_LSEVPVDLPD_					0	0	0			REV__ENST00000412120.2_1_1:1853728-1858343:-|nuORF	REV__ENST00000412120.2_1_1:1853728-1858343:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	542.6544799804688	2	542.282054	1082.54956	-0.40368	-0.00021891	-0.68423	-0.00037105	-1.0879	-0.00058996	542.2816101657293	47.895	0.60505	47.895	47.618	48.223	0					15	11	2	0	0	0	0.52461	1	16882	16882		22.736	0	1	2375100	+		33381	19314	24304	24477	32509	32509					0.011582957953123696
LSEWHQPSI	9	Unmodified	_LSEWHQPSI_					0	0	0			REV__ENSG00000124201|ENST00000396105|ZNFX1	REV__ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	A375_MHC_IP_R2	2	548.1422119140625	2	548.774731	1095.53491	-0.73027	-0.00040075	0.099924	5.4836E-05	-0.63035	-0.00034592	548.7750295278853	63.374	1.0153	64.114	63.734	64.749	0.74022					23	19	2	0	0	0	0.74412	1	24272	24272		10.074	0	1	1595200	+		33382	18282	24305	24478	32510	32510					-0.009037315621299058
LSEWQKELY	9	Unmodified	_LSEWQKELY_					0	0	0		ENSG00000196453|ENST00000247930|ZNF777	ENSG00000196453|ENST00000247930|ZNF777	ENSG00000196453|ENST00000247930|ZNF777	MULTI-SECPEP	A375_MHC_IP_R1	1	598.185546875	2	598.303321	1194.59209	-0.5795	-0.00034672	0.63078	0.0003774	0.051275	3.0678E-05	598.303644848231	66.313	0.81308	66.313	65.871	66.684	0					35	15	4	0	0	0	0.0078253	1	24042	24042		168.54	108.46	1	12521000			33383	9043	24306	24479	32511	32511					0.0025769092358132184
LSEWQKELY	9	Unmodified	_LSEWQKELY_					0	0	0		ENSG00000196453|ENST00000247930|ZNF777	ENSG00000196453|ENST00000247930|ZNF777	ENSG00000196453|ENST00000247930|ZNF777	MULTI-SECPEP	A375_MHC_IP_R2	2	598.703369140625	2	598.303321	1194.59209	-0.71224	-0.00042613	0.22803	0.00013643	-0.48421	-0.0002897	598.3033795817429	65.662	0.91557	66.4	66.018	66.934	0.73811					38	17	4	0	0	0	0.011093	1	24830	24830		128.57	62.116	1	8930500			33384	9043	24306	24479	32512	32512					0.0025769092358132184
LSFAELFSF	9	Unmodified	_LSFAELFSF_					0	0	0		FEM1C|p.F483Sfs*15|1|0.08|ENSG00000145780|chr5:115524716-115524716|G/-|frameshift_variant;ENSG00000145780|ENST00000274457|FEM1C	FEM1C|p.F483Sfs*15|1|0.08|ENSG00000145780|chr5:115524716-115524716|G/-|frameshift_variant	FEM1C|p.F483Sfs*15|1|0.08|ENSG00000145780|chr5:115524716-115524716|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	530.9403076171875	2	530.771126	1059.5277	-0.55038	-0.00029213	-3.4485	-0.0018304	-3.9989	-0.0021225	530.7700247288385	93.005	0.30267	93.744	93.596	93.899	0.73902					7	5	2	0	0	0	0.62767	1	35343	35343		3.9444	0	1	573630			33385	5581	24307	24480	32513	32513					0.00031535837410956447
LSFAVFFTI	9	Unmodified	_LSFAVFFTI_					0	0	0			REV__LRRC66|p.L388F|1|0.3|ENSG00000188993|chr4:51995860-51995860|G/A|missense_variant	REV__LRRC66|p.L388F|1|0.3|ENSG00000188993|chr4:51995860-51995860|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1318359375	2	522.791861	1043.56917	-0.64147	-0.00033536	-2.2652	-0.0011843	-2.9067	-0.0015196	522.7899075598897	36.907	0.60626	36.907	36.592	37.198	0					31	11	4	0	0	0	0.39388	1	12450	12450		32.305	2.8683	1	12135000	+		33386	26953	24308	24481	32514	32514					0.049127165967547626
LSFCFNEDTSF	11	Unmodified	_LSFCFNEDTSF_					0	0	0			REV__ENST00000376946.2_1_10:22209591-22217997:-|nuORF	REV__ENST00000376946.2_1_10:22209591-22217997:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	654.6448974609375	2	655.273903	1308.53325	-0.33521	-0.00021965	-1.6737	-0.0010967	-2.0089	-0.0013164	655.7733715140334	92.063	0.50508	92.063	91.756	92.261	0					13	9	2	0	0	0	0.99738	1	33816	33816		2.7352	0.89096	1	1574500	+		33387	24152	24309	24482	32515	32515					-0.10867153433082422
LSFDEGRSWS	10	Unmodified	_LSFDEGRSWS_					0	0	0		nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1;nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1	nc|ENSG00000108018|Q8WY21-4|SORCS1	nc|ENSG00000108018|Q8WY21-4|SORCS1	MULTI-MSMS	A375_MHC_IP_R1	1	592.6719360351562	2	592.272552	1182.53055	-0.32868	-0.00019467	-0.42319	-0.00025065	-0.75187	-0.00044531	592.2724605786636	42.182	1.1162	42.182	41.674	42.79	0					44	21	3	0	0	0	0.60608	1	14601	14601		20.415	2.2682	1	3776500			33388	2778	24310	24483	32516	32516					-0.053412407757150504
LSFDEGRSWS	10	Unmodified	_LSFDEGRSWS_					0	0	0		nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1;nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1	nc|ENSG00000108018|Q8WY21-4|SORCS1	nc|ENSG00000108018|Q8WY21-4|SORCS1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	592.272552	1182.53055	-0.32868	-0.00019467	-0.42319	-0.00025065	-0.75187	-0.00044531	592.2724605786636	42.182	1.1162	42.182	41.674	42.79	0	-0.0092123	-0.0002589	NaN	20.415	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3776500			33389	2778	24310	24483							-0.053412407757150504
LSFDEGRSWS	10	Unmodified	_LSFDEGRSWS_					0	0	0		nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1;nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1	nc|ENSG00000108018|Q8WY21-4|SORCS1	nc|ENSG00000108018|Q8WY21-4|SORCS1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	592.272552	1182.53055	-0.69893	-0.00041396	-0.059724	-3.5373E-05	-0.75866	-0.00044933	592.2726126320626	41.426	0.96622	42.201	41.845	42.811	0.77451	0.0092123	0.00017165	NaN	20.415	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2926200			33390	2778	24310	24483							-0.053412407757150504
LSFDQRKL	8	Unmodified	_LSFDQRKL_					0	0	0			REV__ENSG00000162738|ENST00000368061|VANGL2	REV__ENSG00000162738|ENST00000368061|VANGL2	MULTI-SECPEP	A375_MHC_IP_R1	1	504.1878356933594	2	503.787641	1005.56073	0.21731	0.00010948	-0.25947	-0.00013072	-0.042156	-2.1238E-05	503.78735655761585	44.903	0.40419	44.903	44.676	45.081	0					15	7	3	0	0	0	0.81376	1	15697	15697		13.906	0	1	4085100	+		33391	20300	24311	24484	32517	32517					0.058171626801254206
LSFEDLKQL	9	Unmodified	_LSFEDLKQL_					0	0	0			REV__nc|ENSG00000171509|Q9HBX9-4|RXFP1	REV__nc|ENSG00000171509|Q9HBX9-4|RXFP1	MULTI-SECPEP	A375_MHC_IP_R2	2	547.1997680664062	2	546.800414	1091.58628	-1.0849	-0.00059323	0.77977	0.00042638	-0.30515	-0.00016686	546.8003801816576	58.257	0.35741	59.006	58.879	59.237	0.74894					10	6	2	0	0	0	0.50702	1	22075	22075		25.399	2.663	1	2091600	+		33392	27358	24312	24485	32518	32518					0.04414592411899321
LSFGAQTLRW	10	Unmodified	_LSFGAQTLRW_					0	0	0		ENST00000483882.1_1_11:47281281-47282064:+|nuORF	ENST00000483882.1_1_11:47281281-47282064:+|nuORF	ENST00000483882.1_1_11:47281281-47282064:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	394.9365539550781	3	393.548741	1177.62439	0.01866	7.3435E-06	0.086521	3.405E-05	0.10518	4.1394E-05	393.54874959010255	52.461	0.60863	52.461	52.085	52.694	0					35	11	5	0	0	0	0.69833	1	18636	18636		7.9454	3.2295	1	16575000			33393	12549	24313	24486	32519	32519					0.04268523117252698
LSFGRGVP	8	Unmodified	_LSFGRGVP_					0	0	0			REV__ENST00000440687.1_1_20:44728270-44728609:+|nuORF	REV__ENST00000440687.1_1_20:44728270-44728609:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	417.1375732421875	2	416.73742	831.460287	0.39197	0.00016335	-0.30128	-0.00012555	0.090685	3.7792E-05	416.7372749664685	35.38	0.45844	35.38	35.167	35.625	0					11	8	2	0	0	0	0.972	1	11783	11783		7.9102	4.3137	1	2011500	+		33394	24798	24314	24487	32520	32520					0.03781550417136259
LSFHVLTKTR	10	Unmodified	_LSFHVLTKTR_					0	0	0		ENST00000482540.1_1_7:8110532-8125911:+|nuORF	ENST00000482540.1_1_7:8110532-8125911:+|nuORF	ENST00000482540.1_1_7:8110532-8125911:+|nuORF	MSMS	A375_MHC_IP_R2	2	401.30462646484375	3	401.239907	1200.69789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.705	1	56.455	55.955	56.955	0.75025								0	0	0	0.15464	1	21047	21047		5.7834	1.3773	1				33395	12526	24315	24488	32521	32521					0.10557071559696851
LSFIDLFAW	9	Unmodified	_LSFIDLFAW_					0	0	0			REV__ASCC2|p.P264S|1|0.5|ENSG00000100325|chr22:29813473-29813473|G/A|missense_variant	REV__ASCC2|p.P264S|1|0.5|ENSG00000100325|chr22:29813473-29813473|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	556.7051391601562	2	556.294768	1110.57498	-0.68864	-0.00038309	-0.52711	-0.00029323	-1.2158	-0.00067632	556.2944021326188	109.16	0.81471	109.9	109.52	110.33	0.74683					22	15	2	0	0	0	0.52144	1	41269	41269		23.148	0	1	1373300	+		33396	15461	24316	24489	32522	32522					0.02411815108416704
LSFILFMFQLY	11	Unmodified	_LSFILFMFQLY_					0	0	0		ENSG00000142227|ENST00000270221|EMP3	ENSG00000142227|ENST00000270221|EMP3	ENSG00000142227|ENST00000270221|EMP3	MULTI-SECPEP	A375_MHC_IP_R2	2	475.1220703125	3	474.589437	1420.74648	-0.80107	-0.00038018	0.47273	0.00022435	-0.32833	-0.00015582	474.5897275618361	49.873	0.45947	50.627	50.344	50.804	0.75406					14	8	2	0	0	0	0.99681	1	18715	18715		4.4062	2.1534	1	1041100			33397	5297	24317	24490	32523	32523					0.052938040845901924
LSFISISHTI	10	Unmodified	_LSFISISHTI_					0	0	0		MRGPRX1|p.P91S|1|0.06|ENSG00000170255|chr11:18934514-18934514|G/A|missense_variant	MRGPRX1|p.P91S|1|0.06|ENSG00000170255|chr11:18934514-18934514|G/A|missense_variant	MRGPRX1|p.P91S|1|0.06|ENSG00000170255|chr11:18934514-18934514|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	559.3168334960938	2	559.316232	1116.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.97	1	113.97	113.47	114.47	0								0	0	0	0.15308	1	41792	41792		10.824	0.75	1				33398	14399	24318	24491	32524	32524					0.06426585165854704
LSFIVWKKTFI	11	Unmodified	_LSFIVWKKTFI_					0	0	0		ENSG00000169006|ENST00000306928|NTSR2	ENSG00000169006|ENST00000306928|NTSR2	ENSG00000169006|ENST00000306928|NTSR2	MULTI-SECPEP	A375_MHC_IP_R1	1	691.2425537109375	2	691.415749	1380.81694	-0.3886	-0.00026868	-3.2906	-0.0022752	-3.6792	-0.0025439	691.91705750121	109.22	0.15385	109.22	109.12	109.27	0					4	2	2	0	0	0	0.99606	1	40080	40080		3.2813	0	1	627330			33399	7368	24319	24492	32525	32525					0.14176845464544385
LSFKKFKVLK	10	Unmodified	_LSFKKFKVLK_					0	0	0		ENST00000533597.1_1_11:108016907-108018114:+|nuORF	ENST00000533597.1_1_11:108016907-108018114:+|nuORF	ENST00000533597.1_1_11:108016907-108018114:+|nuORF	MSMS	A375_MHC_IP_R2	2	619.4388427734375	2	619.405184	1236.79581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.37	1	113.1	112.6	113.6	0.72458								0	0	0	0.15591	1	42364	42364		1.6526	0	1				33400	13201	24320	24493	32526	32526					0.18688880155696097
LSFKNKDI	8	Unmodified	_LSFKNKDI_					0	0	0			REV__tr|U7T4B6|U7T4B6_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00410PE=4SV=1	REV__tr|U7T4B6|U7T4B6_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00410PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	482.63140869140625	2	482.776742	963.538931	-0.59044	-0.00028505	-0.7525	-0.00036329	-1.3429	-0.00064834	482.7765208338648	77.695	0.40808	78.438	78.216	78.624	0.74293					10	7	2	0	0	0	0.8824	1	29517	29517		23.148	0	1	730270	+		33401	28798	24321	24494	32527	32527					0.05570357931560466
LSFKPPRQLG	10	Unmodified	_LSFKPPRQLG_					0	0	0		ENST00000488504.5_1_22:50691832-50695243:-|nuORF;nc|ENSG00000188130|P53778-2|MAPK12;ENSG00000188130|ENST00000215659|MAPK12;ENST00000497036.5_1_22:50691832-50699551:-|nuORF	ENST00000488504.5_1_22:50691832-50695243:-|nuORF	ENST00000488504.5_1_22:50691832-50695243:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	572.226318359375	2	571.837665	1141.66078	-0.29993	-0.00017151	0.01292	7.3883E-06	-0.28701	-0.00016412	571.8373840775633	61.018	0.30499	61.018	60.77	61.075	0					8	5	2	0	0	0	0.87043	1	21966	21966		15.248	5.0979	1	788180			33402	8885	24322	24495	32528	32528					0.09561400013922139
LSFKPPRQLG	10	Unmodified	_LSFKPPRQLG_					0	0	0		ENST00000488504.5_1_22:50691832-50695243:-|nuORF;nc|ENSG00000188130|P53778-2|MAPK12;ENSG00000188130|ENST00000215659|MAPK12;ENST00000497036.5_1_22:50691832-50699551:-|nuORF	ENST00000488504.5_1_22:50691832-50695243:-|nuORF	ENST00000488504.5_1_22:50691832-50695243:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	571.837665	1141.66078	-0.62534	-0.00035759	-0.085459	-4.8869E-05	-0.7108	-0.00040646	571.8373980100397	59.91	0.25081	60.657	60.553	60.804	0.74714	-0.18037	-6.3244E-05	NaN	10.8	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	607460			33403	8885	24322	24495							0.09561400013922139
LSFLETWY	8	Unmodified	_LSFLETWY_					0	0	0		ENSG00000221813|ENST00000641698|OR6B1	ENSG00000221813|ENST00000641698|OR6B1	ENSG00000221813|ENST00000641698|OR6B1	MSMS	A375_MHC_IP_R2	2	529.7164306640625	2	529.7633	1057.51205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.598	1	47.363	46.863	47.863	0.76519								0	0	0	0.16876	1	17454	17454		13.508	0.97634	1				33404	9663	24323	24496	32529	32529					-0.01440750679626035
LSFLEYHLPD	10	Unmodified	_LSFLEYHLPD_					0	0	0			REV__NETO2|p.P396L|1|0.2|ENSG00000171208|chr16:47083612-47083612|G/A|missense_variant	REV__NETO2|p.P396L|1|0.2|ENSG00000171208|chr16:47083612-47083612|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	617.7108154296875	2	617.311146	1232.60774	-0.33859	-0.00020901	-0.10494	-6.4781E-05	-0.44353	-0.0002738	617.3110889955879	63.873	0.45989	63.873	63.58	64.04	0					17	8	3	0	0	0	0.88918	1	23126	23126		18.146	5.1039	1	1873200	+		33405	27594	24324	24497	32530	32530					0.0007397744061563571
LSFLKLSSL	9	Unmodified	_LSFLKLSSL_					0	0	0		PEX1|p.P549S|1|0.35|ENSG00000127980|chr7:92509354-92509354|G/A|missense_variant	PEX1|p.P549S|1|0.35|ENSG00000127980|chr7:92509354-92509354|G/A|missense_variant	PEX1|p.P549S|1|0.35|ENSG00000127980|chr7:92509354-92509354|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	504.70989990234375	2	504.310418	1006.60628	-0.11639	-5.8696E-05	-0.26659	-0.00013444	-0.38298	-0.00019314	504.31010579828325	108.18	1.7766	108.18	107.9	109.68	0					64	34	3	0	0	0	0.05021	1	39674	39674		69.105	7.503	1	13398000			33406	15159	24325	24498	32531	32531					0.10324388142510088
LSFLLNTVSV	10	Unmodified	_LSFLLNTVSV_					0	0	0		ENSG00000006638|ENST00000375190|TBXA2R;nc|ENSG00000006638|P21731-2|TBXA2R	ENSG00000006638|ENST00000375190|TBXA2R	ENSG00000006638|ENST00000375190|TBXA2R	MULTI-MSMS	A375_MHC_IP_R2	2	365.2815246582031	3	364.881497	1091.62266	-0.30628	-0.00011176	0.21274	7.7624E-05	-0.093544	-3.4132E-05	364.8814976525449	61.552	0.55418	62.297	61.919	62.473	0.74503					21	10	3	0	0	0	0.66857	1	23321	23321		15.739	0.49014	1	2299800			33407	923	24326	24499	32532	32532					0.08051469308611559
LSFLPACTPP	10	Unmodified	_LSFLPACTPP_					0	0	0		ENST00000392263.6_2_2:202098201-202098773:+|nuORF	ENST00000392263.6_2_2:202098201-202098773:+|nuORF	ENST00000392263.6_2_2:202098201-202098773:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	524.2911376953125	2	523.272978	1044.5314	-0.47126	-0.0002466	-0.88906	-0.00046522	-1.3603	-0.00071182	523.2727929808151	92.639	2.2298	93.378	92.432	94.661	0.73902					88	43	4	0	0	0	0.62155	1	35398	35398		19.257	2.3147	1	12318000			33408	11420	24327	24500	32533	32533					0.010918823396195876
LSFLPDHC	8	Unmodified	_LSFLPDHC_					0	0	0			REV__ENST00000405844.5_1_7:19765203-19769053:-|nuORF	REV__ENST00000405844.5_1_7:19765203-19769053:-|nuORF	MSMS	A375_MHC_IP_R1	1	466.1773986816406	2	466.220746	930.426938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.9	1	111.9	111.4	112.4	0								0	0	0	0.16876	1	41019	41019		5.2307	0	1		+		33409	24438	24328	24501	32534	32534					-0.041058194170886964
LSFLTLLLLVK	11	Unmodified	_LSFLTLLLLVK_					0	0	0			REV__tr|U7T007|U7T007_FUSNUDUF112domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00764PE=4SV=1	REV__tr|U7T007|U7T007_FUSNUDUF112domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00764PE=4SV=1	MSMS	A375_MHC_IP_R2	2	630.2420654296875	2	630.4205	1258.82645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.75	1	125.08	124.58	125.58	0.32969								0	0	0	0.15541	1	48350	48350		17.113	9.5039	1		+		33410	28662	24329	24502	32535	32535					0.2073861375006345
LSFLYDIM	8	Unmodified	_LSFLYDIM_					0	0	0		nc|ENSG00000198363|Q12797-7|ASPH	nc|ENSG00000198363|Q12797-7|ASPH	nc|ENSG00000198363|Q12797-7|ASPH	MULTI-SECPEP	A375_MHC_IP_R2	2	1001.30029296875	1	1001.50123	1000.49396	-0.047564	-4.7636E-05	1.5319	0.0015342	1.4844	0.0014866	1001.5040909701396	128.76	0.3533	129	128.76	129.11	0.23946					8	6	2	0	0	0	0.8824	1	50586	50586		16.942	6.8684	1	10259000			33411	14851	24330	24503	32536	32536					-0.006272089259709901
LSFMFLFCFV	10	Unmodified	_LSFMFLFCFV_					0	0	0			REV__ENST00000472196.1_1_10:108426948-108434841:-|nuORF	REV__ENST00000472196.1_1_10:108426948-108434841:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	627.7086181640625	2	627.308506	1252.60246	-0.57797	-0.00036257	0.67929	0.00042612	0.10132	6.3556E-05	627.3088950972988	46.22	0.40146	46.22	46.043	46.444	0					12	7	2	0	0	0	0.66712	1	16236	16236		15.847	0	1	2683300	+		33412	25131	24331	24504	32537	32537					-0.01373740947224178
LSFMFLFCFV	10	Unmodified	_LSFMFLFCFV_					0	0	0			REV__ENST00000472196.1_1_10:108426948-108434841:-|nuORF	REV__ENST00000472196.1_1_10:108426948-108434841:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	627.308506	1252.60246	-0.84431	-0.00052965	0.95605	0.00059974	0.11174	7.0093E-05	627.3091805793781	45.547	0.40381	46.312	46.099	46.503	0.76519	0.046127	0.00023528	NaN	15.847	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2406500	+		33413	25131	24331	24504							-0.01373740947224178
LSFPDPCDQA	10	Unmodified	_LSFPDPCDQA_					0	0	0		ENST00000501855.6_1_5:180258872-180261320:+|nuORF	ENST00000501855.6_1_5:180258872-180261320:+|nuORF	ENST00000501855.6_1_5:180258872-180261320:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	547.1368408203125	2	546.736957	1091.45936	-0.74907	-0.00040954	0.52752	0.00028841	-0.22155	-0.00012113	546.737281640617	130.13	0.25497	130.13	129.95	130.21	0					8	4	3	0	0	0	0.63381	1	50083	50083		24.991	6.8446	1	9986800			33414	12786	24332	24505	32538	32538					-0.082710768047491
LSFPDPCDQA	10	Unmodified	_LSFPDPCDQA_					0	0	0		ENST00000501855.6_1_5:180258872-180261320:+|nuORF	ENST00000501855.6_1_5:180258872-180261320:+|nuORF	ENST00000501855.6_1_5:180258872-180261320:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	546.736957	1091.45936	-0.8173	-0.00044685	0.64382	0.000352	-0.17348	-9.4847E-05	546.7371439875885	129.92	0.1515	130.13	130.05	130.2	0.2142	0.00025109	7.1881E-05	NaN	24.991	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3969200			33415	12786	24332	24505							-0.082710768047491
LSFPDWLKE	9	Unmodified	_LSFPDWLKE_					0	0	0			REV__ENSG00000187605|ENST00000409262|TET3	REV__ENSG00000187605|ENST00000409262|TET3	MULTI-SECPEP	A375_MHC_IP_R2	2	567.15771484375	2	567.795132	1133.57571	-0.31744	-0.00018024	-0.98862	-0.00056134	-1.3061	-0.00074158	567.7943799651038	48.226	1.4178	48.983	48.374	49.792	0.75737					32	27	2	0	0	0	0.53748	1	18338	18338		24.021	8.1734	1	1554100	+		33416	22032	24333	24506	32539	32539					0.014266097574591186
LSFPLGKWF	9	Unmodified	_LSFPLGKWF_					0	0	0		ENST00000428670.7_1_12:90049866-90102507:-|nuORF	ENST00000428670.7_1_12:90049866-90102507:-|nuORF	ENST00000428670.7_1_12:90049866-90102507:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	365.2693786621094	3	365.539294	1093.59605	-0.047395	-1.7325E-05	-2.0955	-0.00076598	-2.1429	-0.0007833	365.5385017599923	40.498	0.40557	41.272	40.98	41.386	0.77451					9	7	2	0	0	0	0.76642	1	15016	15016		5.7834	0	1	750080			33417	11836	24334	24507	32540	32540					0.05299825207930553
LSFPQSCSFW	10	Unmodified	_LSFPQSCSFW_					0	0	0		ENST00000463704.5_1_2:74710222-74710678:+|nuORF	ENST00000463704.5_1_2:74710222-74710678:+|nuORF	ENST00000463704.5_1_2:74710222-74710678:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	401.6034851074219	3	401.18307	1200.52738	-0.050006	-2.0062E-05	0.461	0.00018494	0.41099	0.00016488	401.18314357713723	30.797	0.25197	31.515	31.417	31.669	0.71857					6	4	2	0	0	0	0.91932	1	10899	10899		5.0475	1.7279	1	635620			33418	12215	24335	24508	32541	32541					-0.0648620715405741
LSFPTTKTY	9	Unmodified	_LSFPTTKTY_					0	0	0		CON__P01966;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;ENST00000487791.1_1_16:226802-227261:+|nuORF	CON__P01966;ENSG00000206172|ENST00000320868|HBA1	CON__P01966	MULTI-SECPEP	A375_MHC_IP_R2	2	529.9622192382812	2	529.281857	1056.54916	-0.98492	-0.0005213	0.1545	8.1773E-05	-0.83043	-0.00043953	529.7830082903096	57.003	0.91644	57.753	57.306	58.222	0.75015					23	15	3	0	0	0	0.38578	1	21479	21479		21.537	3.3906	1	3065200		+	33419	579;8913	24336	24509	32542	32542					0.02314920866160719
LSFPVAAAYI	10	Unmodified	_LSFPVAAAYI_					0	0	0			REV__nc|ENSG00000109066|Q8NE00-2|TMEM104	REV__nc|ENSG00000109066|Q8NE00-2|TMEM104	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1920166015625	2	526.294768	1050.57498	-0.48007	-0.00025266	-3.7321	-0.0019642	-4.2121	-0.0022168	526.2935827763639	74.31	0.25453	75.047	74.857	75.111	0.73752					7	4	2	0	0	0	0.89109	1	28225	28225		7.2892	0.56607	1	835220	+		33420	17569	24337	24510	32543	32543					0.05171815108406008
LSFRHRPW	8	Unmodified	_LSFRHRPW_					0	0	0			REV__ENST00000463679.5_1_11:62458718-62458802:-|nuORF	REV__ENST00000463679.5_1_11:62458718-62458802:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	550.19970703125	2	549.801417	1097.58828	-0.61197	-0.00033646	-1.3637	-0.00074976	-1.9757	-0.0010862	549.800570364863	40.911	0.30081	40.911	40.762	41.063	0					9	5	2	0	0	0	0.90224	1	14136	14136		8.5933	0.98433	1	2007700	+		33421	20814	24338	24511	32544	32544					0.043391107310071675
LSFRSSRKV	9	Unmodified	_LSFRSSRKV_					0	0	0		nc|ENSG00000135248|Q96KD3|GARIN1B	nc|ENSG00000135248|Q96KD3|GARIN1B	nc|ENSG00000135248|Q96KD3|GARIN1B	MULTI-MSMS	A375_MHC_IP_R2	2	359.9486389160156	3	360.548852	1078.62473	-0.49027	-0.00017676	0.029751	1.0727E-05	-0.46052	-0.00016604	360.5488118855383	24.288	0.20318	24.932	24.806	25.009	0.64368					8	3	3	0	0	0	0.70307	1	7899	7899		4.1895	0.90819	1	7890500			33422	14617	24339	24512	32545	32545					0.0885594283708997
LSFRSSWDY	9	Unmodified	_LSFRSSWDY_					0	0	0		ENST00000541592.1_1_12:14922201-14923048:-|nuORF	ENST00000541592.1_1_12:14922201-14923048:-|nuORF	ENST00000541592.1_1_12:14922201-14923048:-|nuORF	MSMS	A375_MHC_IP_R1	1	580.7034912109375	2	580.772188	1159.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.47	1	104.47	103.97	104.97	0								0	0	0	0.15486	1	38361	38361		12.532	0	1				33423	13288	24340	24513	32546	32546					-0.04356035424757465
LSFSETCYTL	10	Unmodified	_LSFSETCYTL_					0	0	0		ENSG00000198967|ENST00000641002|OR10Z1;ENSG00000279111|ENST00000623167|OR10X1	ENSG00000198967|ENST00000641002|OR10Z1	ENSG00000198967|ENST00000641002|OR10Z1	MSMS	A375_MHC_IP_R2	2	582.258544921875	2	582.26809	1162.52163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.203	1	89.935	89.435	90.435	0.7318								0	0	0	0.14862	1	33949	33949		20.454	9.6297	1				33424	9386	24341	24514	32547	32547					-0.05313350456412991
LSFSETCYTL	10	Unmodified	_LSFSETCYTL_					0	0	0		ENSG00000198967|ENST00000641002|OR10Z1;ENSG00000279111|ENST00000623167|OR10X1	ENSG00000198967|ENST00000641002|OR10Z1	ENSG00000198967|ENST00000641002|OR10Z1	MSMS	A375_MHC_IP_R2	2	582.2390747070312	2	582.26809	1162.52163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.74	1	103.51	103.01	104.01	0.76428								0	0	0	0.14862	1	38923	38923		20.454	7.4112	1				33425	9386	24341	24514	32548	32548					-0.05313350456412991
LSFSHRPI	8	Unmodified	_LSFSHRPI_					0	0	0		ENST00000575124.1_1_16:3070552-3071824:+|nuORF	ENST00000575124.1_1_16:3070552-3071824:+|nuORF	ENST00000575124.1_1_16:3070552-3071824:+|nuORF	MSMS	A375_MHC_IP_R1	1	478.6688537597656	2	478.769252	955.52395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.08	1	124.08	123.58	124.58	0								0	0	0	0.16876	1	46561	46561		12.532	0	1				33426	13633	24342	24515	32549	32549					0.0444091085423679
LSFSISSLTL	10	Unmodified	_LSFSISSLTL_					0	0	0		nc|ENSG00000168216|Q9NUN5-2|LMBRD1;ENSG00000168216|ENST00000649934|LMBRD1;nc|ENSG00000168216|Q9NUN5-3|LMBRD1	nc|ENSG00000168216|Q9NUN5-2|LMBRD1	nc|ENSG00000168216|Q9NUN5-2|LMBRD1	MULTI-SECPEP	A375_MHC_IP_R2	2	534.6591796875	2	534.30279	1066.59103	-0.83385	-0.00044553	-0.016886	-9.0223E-06	-0.85074	-0.00045455	534.3026760378523	81.867	0.61057	82.61	82.381	82.992	0.74293					18	11	2	0	0	0	0.52461	1	31186	31186		29.082	0	1	3757800			33427	7275	24343	24516	32550	32550					0.06039476554656176
LSFSKNRIPD	10	Unmodified	_LSFSKNRIPD_					0	0	0			REV__ENSG00000112796|ENST00000371383|ENPP5	REV__ENSG00000112796|ENST00000371383|ENPP5	MULTI-SECPEP	A375_MHC_IP_R1	1	393.6072998046875	3	392.8839	1175.62987	0.36404	0.00014302	-0.28266	-0.00011105	0.081374	3.1971E-05	392.8835482119445	21.675	0.25255	21.675	21.505	21.757	0					5	4	2	0	0	0	0.92199	1	5721	5721		7.4771	3.0709	1	452280	+		33428	17756	24344	24517	32551	32551					0.04908201909051968
LSFTERVKY	9	Unmodified	_LSFTERVKY_					0	0	0		DNAH5|p.S1880F|1|0.57|ENSG00000039139|chr5:13840976-13840976|G/A|missense_variant	DNAH5|p.S1880F|1|0.57|ENSG00000039139|chr5:13840976-13840976|G/A|missense_variant	DNAH5|p.S1880F|1|0.57|ENSG00000039139|chr5:13840976-13840976|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	381.6130065917969	3	381.544996	1141.61316	-0.12347	-4.7111E-05	1.9158	0.00073096	1.7923	0.00068385	381.54622301040854	40.312	0.50642	41.086	40.879	41.386	0.77451					22	9	4	0	0	0	0.46038	1	15008	15008		15.248	6.8042	1	2549100			33429	770	24345	24518	32552	32552					0.04801701023075111
LSFTIFFGF	9	Unmodified	_LSFTIFFGF_					0	0	0			REV__ENST00000256255.10_2_8:29921247-29921394:-|nuORF	REV__ENST00000256255.10_2_8:29921247-29921394:-|nuORF	MSMS	A375_MHC_IP_R1	1	539.7112426757812	2	539.784036	1077.55352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.835	1	35.835	35.335	36.335	0								0	0	0	0.15486	1	11948	11948		7.9102	0.62092	1		+		33430	23146	24346	24519	32553	32553					0.017844300797150936
LSFTIPSLSK	10	Unmodified	_LSFTIPSLSK_					0	0	0		nc|ENSG00000122591|Q9BYI3-3|HYCC1;ENSG00000122591|ENST00000432176|HYCC1;ENST00000409923.5_1_7:23016960-23017008:-|nuORF;ENST00000498780.5_1_2:201862166-201888732:-|nuORF;nc|ENSG00000155744|Q8IXS8|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF;ENSG00000155744|ENST00000681958|HYCC2	nc|ENSG00000122591|Q9BYI3-3|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	MULTI-MSMS	A375_MHC_IP_R1	1	365.2818908691406	3	364.881497	1091.62266	0.32918	0.00012011	0.22292	8.1339E-05	0.5521	0.00020145	364.88152972534533	62.497	0.56427	62.497	62.198	62.762	0					17	10	2	0	0	0	0.70312	1	22581	22581		10.899	0.58372	1	1323300			33431	14572	24347	24520	32554	32554					0.08051469308588821
LSFVLSTPQY	10	Unmodified	_LSFVLSTPQY_					0	0	0		ENSG00000166148|ENST00000299178|AVPR1A	ENSG00000166148|ENST00000299178|AVPR1A	ENSG00000166148|ENST00000299178|AVPR1A	MULTI-MSMS	A375_MHC_IP_R2	2	578.8856811523438	2	577.808239	1153.60193	-0.19714	-0.00011391	-0.23452	-0.00013551	-0.43167	-0.00024942	577.8081655092972	96.23	0.55853	96.98	96.653	97.211	0.75045					36	10	4	0	0	0	0.71364	1	36457	36457		10.824	0	1	14149000			33432	7028	24348	24521	32555	32555					0.03126878928969745
LSFWWPLA	8	Unmodified	_LSFWWPLA_					0	0	0		ENSG00000154122|ENST00000284268|ANKH;ENST00000503939.5_1_5:14741448-14751330:-|nuORF;nc|ENSG00000154122|Q9HCJ1-2|ANKH	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MULTI-SECPEP	A375_MHC_IP_R1	1	509.95904541015625	2	510.271096	1018.52764	-0.6849	-0.00034948	-0.78523	-0.00040068	-1.4701	-0.00075016	510.2707724345232	23.915	0.30431	23.915	23.787	24.092	0					7	5	2	0	0	0	0.972	1	6691	6691		5.7604	0	1	1265500			33433	6058	24349	24522	32556	32556					0.019115806280638026
LSFYLFILPEN	11	Unmodified	_LSFYLFILPEN_					0	0	0		OR4M1|p.G41E|5|0.2|ENSG00000176299|chr14:19780444-19780444|G/A|missense_variant	OR4M1|p.G41E|5|0.2|ENSG00000176299|chr14:19780444-19780444|G/A|missense_variant	OR4M1|p.G41E|5|0.2|ENSG00000176299|chr14:19780444-19780444|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	678.7661743164062	2	678.365921	1354.71729	-0.49249	-0.00033409	0.95331	0.00064669	0.46083	0.00031261	678.3666172366397	47.438	0.40709	48.2	48.022	48.429	0.76128					16	7	3	0	0	0	0.73016	1	17809	17809		8.7454	1.1365	1	10196000			33434	15081	24350	24523	32557	32557					0.054119830599574925
LSFYLFILPEN	11	Unmodified	_LSFYLFILPEN_					0	0	0		OR4M1|p.G41E|5|0.2|ENSG00000176299|chr14:19780444-19780444|G/A|missense_variant	OR4M1|p.G41E|5|0.2|ENSG00000176299|chr14:19780444-19780444|G/A|missense_variant	OR4M1|p.G41E|5|0.2|ENSG00000176299|chr14:19780444-19780444|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	678.365921	1354.71729	-0.2934	-0.00019903	2.2421	0.001521	1.9487	0.001322	678.8684207629567	48.27	0.15253	48.27	48.173	48.325	0	0.034947	0.0016651	NaN	8.7454	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2701200			33435	15081	24350	24523							0.054119830599574925
LSFYLFILPEN	11	Unmodified	_LSFYLFILPEN_					0	0	0		OR4M1|p.G41E|5|0.2|ENSG00000176299|chr14:19780444-19780444|G/A|missense_variant	OR4M1|p.G41E|5|0.2|ENSG00000176299|chr14:19780444-19780444|G/A|missense_variant	OR4M1|p.G41E|5|0.2|ENSG00000176299|chr14:19780444-19780444|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	678.365921	1354.71729	-0.49249	-0.00033409	0.95331	0.00064669	0.46083	0.00031261	678.3666172366397	47.438	0.40709	48.2	48.022	48.429	0.76128	-0.034947	-8.353E-05	NaN	8.7454	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10196000			33436	15081	24350	24523							0.054119830599574925
LSGAGKSSL	9	Unmodified	_LSGAGKSSL_					0	0	0		tr|U7SWZ0|U7SWZ0_FUSNUMethionineimportATP-bindingproteinMetNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01221PE=4SV=1	tr|U7SWZ0|U7SWZ0_FUSNUMethionineimportATP-bindingproteinMetNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01221PE=4SV=1	tr|U7SWZ0|U7SWZ0_FUSNUMethionineimportATP-bindingproteinMetNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01221PE=4SV=1	MSMS	A375_MHC_IP_R2	2	410.2497863769531	2	410.232168	818.449782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.706	1	35.47	34.97	35.97	0.76338								0	0	0	0.15486	1	12544	12544		11.64	0	1				33437	29821	24351	24524	32558	32558					0.033295229720351927
LSGCATTVIV	10	Unmodified	_LSGCATTVIV_					0	0	0			REV__nc|ENSG00000099810|Q13126-7|MTAP	REV__nc|ENSG00000099810|Q13126-7|MTAP	MULTI-SECPEP	A375_MHC_IP_R2	2	481.695068359375	2	482.26261	962.510668	-0.33728	-0.00016266	-2.4003	-0.0011576	-2.7376	-0.0013202	482.2614075535231	95.137	0.35905	95.888	95.785	96.144	0.75045					9	6	2	0	0	0	0.72086	1	36165	36165		24.021	2.2739	1	417070	+		33438	17022	24352	24525	32559	32559					0.02791291959965747
LSGCGPSPVW	10	Unmodified	_LSGCGPSPVW_					0	0	0			REV__ENSG00000158481|ENST00000368170|CD1C	REV__ENSG00000158481|ENST00000368170|CD1C	MSMS	A375_MHC_IP_R2	2	501.71527099609375	2	501.739302	1001.46405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.619	1	75.356	74.856	75.856	0.73752								0	0	0	0.14601	1	28323	28323		25.399	7.2643	1		+		33439	20078	24353	24526	32560	32560					-0.03662147871318666
LSGDTLHW	8	Unmodified	_LSGDTLHW_					0	0	0		ENST00000444995.7_1_22:25771803-25801278:-|nuORF	ENST00000444995.7_1_22:25771803-25801278:-|nuORF	ENST00000444995.7_1_22:25771803-25801278:-|nuORF	MSMS	A375_MHC_IP_R1	1	464.6606750488281	2	464.729792	927.445031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.12	1	49.12	48.62	49.62	0								0	0	0	0.16876	1	17361	17361		26.341	0	1				33440	12023	24354	24527	32561	32561					-0.02159361170720331
LSGEFSVLQR	10	Unmodified	_LSGEFSVLQR_					0	0	0		ENST00000461640.1_1_2:676097-676768:-|nuORF	ENST00000461640.1_1_2:676097-676768:-|nuORF	ENST00000461640.1_1_2:676097-676768:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	568.7086791992188	2	568.308938	1134.60332	-0.65026	-0.00036955	-0.73996	-0.00042052	-1.3902	-0.00079007	568.3088219712495	51.848	0.40836	52.6	52.423	52.831	0.75225					17	7	3	0	0	0	0.89369	1	19559	19559		23.79	23.79	1	2555100			33441	12189	24355	24528	32562	32562					0.04140513017705416
LSGEPGSFNW	10	Unmodified	_LSGEPGSFNW_					0	0	0			REV__nc|ENSG00000063015|Q53EL9-4|SEZ6	REV__nc|ENSG00000063015|Q53EL9-4|SEZ6	MSMS	A375_MHC_IP_R2	2	547.1812133789062	2	547.251089	1092.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.625	1	54.376	53.876	54.876	0.75105								0	0	0	0.15207	1	20242	20242		13.906	0.86358	1		+		33442	16462	24356	24529	32563	32563					-0.054920108331543815
LSGFHTYL	8	Unmodified	_LSGFHTYL_					0	0	0		ENST00000523706.5_1_6:158066772-158067346:+|nuORF;ENST00000478902.1_1_1:27177620-27179357:+|nuORF;nc|ENSG00000204160|Q9NUE0-2|ZDHHC18;ENSG00000204160|ENST00000374142|ZDHHC18;nc|ENSG00000175048|Q8IZN3-2|ZDHHC14;ENSG00000175048|ENST00000359775|ZDHHC14	ENST00000523706.5_1_6:158066772-158067346:+|nuORF	ENST00000523706.5_1_6:158066772-158067346:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	468.6689147949219	2	469.242535	936.470518	-0.54724	-0.00025679	0.085148	3.9955E-05	-0.46209	-0.00021683	469.24233689650436	68.457	0.76087	68.457	68.159	68.92	0					18	14	2	0	0	0	0.78043	1	24768	24768		32.117	5.7757	1	1478600			33443	7926	24357	24530	32564	32564					-0.00025886648302275717
LSGFVNLDVR	10	Unmodified	_LSGFVNLDVR_					0	0	0			REV__nc|ENSG00000153487|Q9UK53|ING1	REV__nc|ENSG00000153487|Q9UK53|ING1	MULTI-SECPEP	A375_MHC_IP_R1	1	374.2767639160156	3	373.876746	1118.60841	0.2077	7.7656E-05	-0.28787	-0.00010763	-0.080167	-2.9973E-05	373.87664762096074	52.683	0.50971	52.683	52.387	52.897	0					17	9	2	0	0	0	0.83447	1	18771	18771		16.275	7.2983	1	2169500	+		33444	27296	24358	24531	32565	32565					0.053848168803369845
LSGGLIAFST	10	Unmodified	_LSGGLIAFST_					0	0	0		ENSG00000065320|ENST00000173229|NTN1	ENSG00000065320|ENST00000173229|NTN1	ENSG00000065320|ENST00000173229|NTN1	MULTI-SECPEP	A375_MHC_IP_R2	2	482.67877197265625	2	483.26875	964.522947	-0.78587	-0.00037979	-0.6201	-0.00029967	-1.406	-0.00067946	483.2689287866264	65.941	0.71283	66.679	66.324	67.037	0.73811					24	13	3	0	0	0	0.33054	1	24895	24895		39.95	1.7741	1	843780			33445	1375	24359	24532	32566	32566					0.039266516946554475
LSGHHSHVLV	10	Unmodified	_LSGHHSHVLV_					0	0	0		ENST00000525188.5_1_11:20409237-20415368:+|nuORF	ENST00000525188.5_1_11:20409237-20415368:+|nuORF	ENST00000525188.5_1_11:20409237-20415368:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	362.87164306640625	3	362.533202	1084.57778	0.01504	5.4526E-06	0.29425	0.00010667	0.30929	0.00011213	362.53323656055545	19.446	0.15259	19.446	19.318	19.471	0					4	2	2	0	0	0	0.53946	1	4693	4693		16.566	9.5288	1	646240			33446	13067	24360	24533	32567	32567					0.03887083285940207
LSGHTGHILAL	11	Unmodified	_LSGHTGHILAL_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MULTI-SECPEP	A375_MHC_IP_R1	1	559.218017578125	2	559.819473	1117.62439	-0.72285	-0.00040467	0.041179	2.3053E-05	-0.68167	-0.00038161	559.8198132326766	131.28	0.55537	131.28	131.02	131.58	0					15	10	2	0	0	0	0.84606	1	50527	50527		27.629	2.2295	1	1036600			33447	1812	24361	24534	32568	32568					0.07028523117219265
LSGIAQKNF	9	Unmodified	_LSGIAQKNF_					0	0	0		ENSG00000156804|ENST00000517956|FBXO32;ENST00000521719.5_1_8:124526414-124553254:-|nuORF;ENST00000287396.2_1_8:124515615-124544254:-|nuORF	ENSG00000156804|ENST00000517956|FBXO32	ENSG00000156804|ENST00000517956|FBXO32	MULTI-SECPEP	A375_MHC_IP_R2	2	489.622802734375	2	489.274367	976.53418	-0.6268	-0.00030668	-0.5593	-0.00027365	-1.1861	-0.00058033	489.2740446521617	81.735	1.1671	82.478	82.078	83.246	0.74293					29	22	2	0	0	0	0.71541	1	30993	30993		16.942	6.7589	1	3801700			33448	6210	24362	24535	32569	32569					0.04497473788808293
LSGIEVDLN	9	Unmodified	_LSGIEVDLN_					0	0	0			REV__tr|U7SRL1|U7SRL1_FUSNUManganese/zinc/irontransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01563PE=4SV=1	REV__tr|U7SRL1|U7SRL1_FUSNUManganese/zinc/irontransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01563PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	479.6895446777344	2	480.25584	958.497126	-0.46294	-0.00022233	3.5844	0.0017214	3.1214	0.0014991	480.25846539800716	90.044	0.25396	90.776	90.699	90.953	0.7318					6	4	2	0	0	0	0.55359	1	34303	34303		15.847	1.9411	1	515850	+		33449	28402	24363	24536	32570	32570					0.016217574523807343
LSGIGFLKNL	10	Unmodified	_LSGIGFLKNL_					0	0	0		ENST00000461745.5_2_3:77089843-77089924:+|nuORF	ENST00000461745.5_2_3:77089843-77089924:+|nuORF	ENST00000461745.5_2_3:77089843-77089924:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	531.7191772460938	2	531.321317	1060.62808	-0.81789	-0.00043456	-3.881	-0.0020621	-4.6989	-0.0024966	531.3194660876022	130.04	0.35521	130.04	129.85	130.21	0					14	6	3	0	0	0	0.70496	1	50058	50058		10.074	0	1	3059500			33450	12191	24364	24537	32571	32571					0.10019192891104467
LSGIHLFLE	9	Unmodified	_LSGIHLFLE_					0	0	0			REV__ENST00000395146.8_1_4:88056873-88057011:+|nuORF	REV__ENST00000395146.8_1_4:88056873-88057011:+|nuORF	MSMS	A375_MHC_IP_R1	1	514.7228393554688	2	514.792392	1027.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.35	1	105.35	104.85	105.85	0								0	0	0	0.14677	1	38674	38674		26.884	1.4843	1		+		33451	24318	24365	24538	32572	32572					0.057549309656678815
LSGILAATIVK	11	Unmodified	_LSGILAATIVK_					0	0	0			REV__ENST00000590278.1_1_19:33696051-33698478:+|nuORF	REV__ENST00000590278.1_1_19:33696051-33698478:+|nuORF	MSMS	A375_MHC_IP_R2	2	362.4675598144531	3	362.569142	1084.6856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.866	1	52.618	52.118	53.118	0.75225								0	0	0	0.14796	1	19531	19531		21.799	6.0608	1		+		33452	18571	24366	24539	32573	32573					0.14664035096643602
LSGILASRGP	10	Unmodified	_LSGILASRGP_					0	0	0		ENST00000369902.7_1_10:104391017-104391560:+|nuORF	ENST00000369902.7_1_10:104391017-104391560:+|nuORF	ENST00000369902.7_1_10:104391017-104391560:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	486.6917724609375	2	485.787641	969.56073	-0.27402	-0.00013311	2.0579	0.00099969	1.7839	0.00086658	485.7875325287737	60.848	0.96734	60.848	60.312	61.279	0					53	18	4	0	0	0	0.21466	1	21974	21974		47.749	5.9091	1	10771000			33453	11145	24367	24540	32574	32574					0.07473162680139467
LSGISSLKL	9	Unmodified	_LSGISSLKL_					0	0	0		ENST00000418729.1_1_11:5364849-5367079:-|nuORF;ENST00000380259.6_2_11:5276313-5367061:-|nuORF;ENST00000415970.5_1_11:5362522-5367079:-|nuORF	ENST00000418729.1_1_11:5364849-5367079:-|nuORF	ENST00000418729.1_1_11:5364849-5367079:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	459.6685791015625	2	459.286943	916.559333	0.26574	0.00012205	0.89902	0.00041291	1.1648	0.00053496	459.28720403603336	49.008	0.25195	49.008	48.882	49.134	0					8	4	2	0	0	0	0.53748	1	17357	17357		24.021	0	1	2183300			33454	11349	24368	24541	32575	32575					0.09771528591375045
LSGKRASIRK	10	Unmodified	_LSGKRASIRK_					0	0	0			REV__TP53|p.N268Ifs*85|1|0.88|ENSG00000141510|chr17:7673817-7673818|-/TCCGTCCCAGTAGATTACCACTA|frameshift_variant	REV__TP53|p.N268Ifs*85|1|0.88|ENSG00000141510|chr17:7673817-7673818|-/TCCGTCCCAGTAGATTACCACTA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	372.9718933105469	3	372.571768	1114.69348	0.31643	0.00011789	-0.88684	-0.00033041	-0.57041	-0.00021252	372.5711714158344	24.977	0.91372	24.977	24.801	25.714	0					21	17	2	0	0	0	0.72061	1	7223	7223		3.0723	0	1	6320500	+		33455	28152	24369	24542	32576	32576					0.14071607136793318
LSGKRASIRK	10	Unmodified	_LSGKRASIRK_					0	0	0			REV__TP53|p.N268Ifs*85|1|0.88|ENSG00000141510|chr17:7673817-7673818|-/TCCGTCCCAGTAGATTACCACTA|frameshift_variant	REV__TP53|p.N268Ifs*85|1|0.88|ENSG00000141510|chr17:7673817-7673818|-/TCCGTCCCAGTAGATTACCACTA|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	372.571768	1114.69348	0.1673	6.233E-05	-0.22628	-8.4306E-05	-0.058986	-2.1976E-05	372.5716617014643	24.23	0.25327	24.873	24.705	24.958	0.64368	-0.0521	9.6411E-05	NaN	3.0723	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4342300	+		33456	28152	24369	24542							0.14071607136793318
LSGKVKPG	8	Unmodified	_LSGKVKPG_					0	0	0			REV__AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	REV__AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	393.28118896484375	2	393.247621	784.480688	-0.38182	-0.00015015	0.16347	6.4283E-05	-0.21835	-8.5868E-05	393.2476614889946	36.325	0.4577	37.096	36.901	37.359	0.7709					13	8	2	0	0	0	0.77643	1	13322	13322		7.9102	0	1	1954600	+		33457	15345	24370	24543	32577	32577					0.07982721076950838
LSGKVKPG	8	Unmodified	_LSGKVKPG_					0	0	0			REV__AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	REV__AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	393.247621	784.480688	0.14546	5.72E-05	-0.01153	-4.534E-06	0.13393	5.2666E-05	393.24753784957227	37.206	0.3559	37.206	36.996	37.351	0	0.05501	-9.088E-05	NaN	7.9102	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	963060	+		33458	15345	24370	24543							0.07982721076950838
LSGKVKPG	8	Unmodified	_LSGKVKPG_					0	0	0			REV__AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	REV__AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	393.247621	784.480688	-0.38182	-0.00015015	0.16347	6.4283E-05	-0.21835	-8.5868E-05	393.2476614889946	36.325	0.4577	37.096	36.901	37.359	0.7709	-0.05501	4.6753E-05	NaN	7.9102	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1954600	+		33459	15345	24370	24543							0.07982721076950838
LSGLDIFTEL	10	Unmodified	_LSGLDIFTEL_					0	0	0		ENSG00000237765|ENST00000422728|FAM200B	ENSG00000237765|ENST00000422728|FAM200B	ENSG00000237765|ENST00000422728|FAM200B	MULTI-MSMS	A375_MHC_IP_R2	2	554.699462890625	2	554.300247	1106.58594	-0.76283	-0.00042284	-0.17119	-9.4889E-05	-0.93402	-0.00051772	554.3000220076848	78.077	0.56328	78.82	78.468	79.031	0.74293					19	10	2	0	0	0	0.57505	1	29610	29610		22.736	0	1	5952000			33460	9760	24371	24544	32578	32578					0.036911726920379806
LSGLLGVAWG	10	Unmodified	_LSGLLGVAWG_					0	0	0		nc|ENSG00000179915|P58400-1|NRXN1;nc|ENSG00000179915|P58400|NRXN1	nc|ENSG00000179915|P58400-1|NRXN1	nc|ENSG00000179915|P58400-1|NRXN1	MSMS	A375_MHC_IP_R2	2	486.6915283203125	2	486.779285	971.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.095	1	60.842	60.342	61.342	0.74714								0	0	0	0.13854	1	22744	22744		30.637	2.1497	1				33461	14794	24372	24545	32579	32579					0.057106617941940385
LSGLLKFNN	9	Unmodified	_LSGLLKFNN_					0	0	0		nc|ENSG00000214413|A8MTZ0-4|BBIP1	nc|ENSG00000214413|A8MTZ0-4|BBIP1	nc|ENSG00000214413|A8MTZ0-4|BBIP1	MSMS	A375_MHC_IP_R2	2	503.2106628417969	2	503.290017	1004.56548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.66	1	95.405	94.905	95.905	0.74474								0	0	0	0.11922	1	35969	35969		36.127	2.0246	1				33462	14897	24373	24546	32580	32580					0.06338046822895649
LSGLLLPFFFL	11	Unmodified	_LSGLLLPFFFL_					0	0	0		ENST00000322038.5_2_18:72922772-72923027:+|nuORF	ENST00000322038.5_2_18:72922772-72923027:+|nuORF	ENST00000322038.5_2_18:72922772-72923027:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	422.630859375	3	422.921404	1265.74238	0.29607	0.00012521	-0.19648	-8.3098E-05	0.099585	4.2117E-05	422.921131155059	22.025	0.25332	22.025	21.911	22.164	0					6	4	2	0	0	0	0.99332	1	5834	5834		7.0371	2.6309	1	936320			33463	10700	24374	24547	32581	32581					0.12014082653172409
LSGLLSGLPFM	11	Unmodified	_LSGLLSGLPFM_					0	0	0			REV__SLC2A7|p.G88S|1|0.25|ENSG00000197241|chr1:9022967-9022967|C/T|missense_variant	REV__SLC2A7|p.G88S|1|0.25|ENSG00000197241|chr1:9022967-9022967|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	378.6424255371094	3	378.879099	1133.61547	0.36797	0.00013942	1.599	0.00060583	1.967	0.00074524	378.87952537340817	59.794	0.45736	59.794	59.548	60.006	0					14	8	2	0	0	0	0.9889	1	21563	21563		6.6235	3.0364	1	1092100	+		33464	27989	24375	24548	32582	32582					0.05400413436541385
LSGLPHYETL	10	Unmodified	_LSGLPHYETL_					0	0	0			REV__ENSG00000185900|ENST00000331373|POMK	REV__ENSG00000185900|ENST00000331373|POMK	MULTI-SECPEP	A375_MHC_IP_R1	1	377.9476013183594	3	377.201118	1128.58152	0.14501	5.4696E-05	0.26247	9.9004E-05	0.40748	0.0001537	377.20111126694724	19.243	0.29937	19.243	19.221	19.521	0					12	7	3	0	0	0	0.91556	1	4844	4844		3.3196	0	1	34022000	+		33465	21929	24376	24549	32583	32583					0.02237708269126415
LSGLQKNPR	9	Unmodified	_LSGLQKNPR_					0	0	0			REV__TRIM38|p.S70N|1|0.47|ENSG00000112343|chr6:25966731-25966731|G/A|missense_variant	REV__TRIM38|p.S70N|1|0.47|ENSG00000112343|chr6:25966731-25966731|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	507.695556640625	2	506.79854	1011.58253	-1.0528	-0.00053355	-1.4397	-0.00072965	-2.4925	-0.0012632	506.7984553369782	24.381	0.81213	25.025	24.602	25.414	0.64368					26	15	4	0	0	0	0.35581	1	7990	7990		26.884	2.2098	1	18221000	+		33466	17727	24377	24550	32584	32584					0.07719967428704422
LSGLTPSLHI	10	Unmodified	_LSGLTPSLHI_					0	0	0			REV__ENST00000541477.5_1_12:7032669-7032828:+|nuORF	REV__ENST00000541477.5_1_12:7032669-7032828:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	519.2109375	2	519.303124	1036.5917	-0.45158	-0.0002345	-0.50025	-0.00025978	-0.95182	-0.00049428	519.3025521850599	63.256	0.71525	63.256	62.762	63.477	0					22	13	3	0	0	0	0.76414	1	22905	22905		10.074	0	1	3238400	+		33467	25959	24378	24551	32585	32585					0.07486315994378856
LSGMKKAWL	9	Unmodified	_LSGMKKAWL_					0	0	0		ENST00000451726.1_1_19:36205079-36205238:+|nuORF	ENST00000451726.1_1_19:36205079-36205238:+|nuORF	ENST00000451726.1_1_19:36205079-36205238:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	517.5589599609375	2	517.296788	1032.57902	-0.54522	-0.00028204	-2.8679	-0.0014836	-3.4132	-0.0017656	518.2981084904598	141.61	0.86925	141.65	141.17	142.04	0.04216					33	16	3	0	0	0	0.78798	1	55489	55489		7.2892	0.56607	1	2673200			33468	12077	24379	24552	32586	32586					0.06403581330482666
LSGNDDYVE	9	Unmodified	_LSGNDDYVE_					0	0	0		nc|ENSG00000196353|Q96A23-2|CPNE4;ENSG00000196353|ENST00000429747|CPNE4	nc|ENSG00000196353|Q96A23-2|CPNE4	nc|ENSG00000196353|Q96A23-2|CPNE4	MSMS	A375_MHC_IP_R2	2	506.1790771484375	2	506.216911	1010.41927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.044	1	77.787	77.287	78.287	0.74293								0	0	0	0.15486	1	29253	29253		12.532	2.3482	1				33469	9028	24380	24553	32587	32587					-0.08552300203666618
LSGNDGNWFDI	11	Unmodified	_LSGNDGNWFDI_					0	0	0		ENSG00000175065|ENST00000308128|DSG4;nc|ENSG00000175065|Q86SJ6-2|DSG4	ENSG00000175065|ENST00000308128|DSG4	ENSG00000175065|ENST00000308128|DSG4	MULTI-SECPEP	A375_MHC_IP_R1	1	619.6773681640625	2	619.277835	1236.54112	0.076243	4.7216E-05	-0.55549	-0.000344	-0.47925	-0.00029679	619.2776099359646	114.64	0.60847	114.64	114.36	114.97	0					17	11	2	0	0	0	0.98591	1	42069	42069		9.3831	0	1	3333900			33470	7928	24381	24554	32588	32588					-0.0676925812126683
LSGNKTHCLPE	11	Unmodified	_LSGNKTHCLPE_					0	0	0			REV__ENSG00000134917|ENST00000257359|ADAMTS8	REV__ENSG00000134917|ENST00000257359|ADAMTS8	MULTI-SECPEP	A375_MHC_IP_R2	2	399.9638366699219	3	400.201012	1197.58121	-0.47941	-0.00019186	0.51518	0.00020618	0.035772	1.4316E-05	400.53595811060205	52.407	1.0116	53.159	52.729	53.74	0.75225					35	19	3	0	0	0	0.99133	1	19949	19949		5.8681	2.7959	1	2889700	+		33471	18812	24382	24555	32589	32589					-0.009680347223593344
LSGNSFYHF	9	Unmodified	_LSGNSFYHF_					0	0	0			REV__NMUR2|p.P193S|1|0.13|ENSG00000132911|chr5:152404537-152404537|G/A|missense_variant	REV__NMUR2|p.P193S|1|0.13|ENSG00000132911|chr5:152404537-152404537|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	535.6687622070312	2	536.248349	1070.48214	-0.4708	-0.00025246	-1.3669	-0.00073298	-1.8377	-0.00098544	536.2475059028069	107.6	0.40943	107.6	107.29	107.7	0					11	7	2	0	0	0	0.78798	1	39382	39382		3.9444	0	1	842050	+		33472	27618	24383	24556	32590	32590					-0.050276896249670244
LSGNVLSYTF	10	Unmodified	_LSGNVLSYTF_					0	0	0		ENSG00000112936|ENST00000313164|C7	ENSG00000112936|ENST00000313164|C7	ENSG00000112936|ENST00000313164|C7	MULTI-SECPEP	A375_MHC_IP_R2	2	551.1846313476562	2	550.784764	1099.55498	-0.71279	-0.0003926	0.21177	0.00011664	-0.50103	-0.00027596	550.7846575815687	63.905	0.40514	64.645	64.394	64.8	0.74022					17	7	3	0	0	0	0.33054	1	24245	24245		39.95	0	1	4379000			33473	3118	24384	24557	32591	32591					0.009180193778092871
LSGPACKSW	9	Unmodified	_LSGPACKSW_					0	0	0		ENST00000554578.5_1_12:57637331-57638104:-|nuORF	ENST00000554578.5_1_12:57637331-57638104:-|nuORF	ENST00000554578.5_1_12:57637331-57638104:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	475.13323974609375	2	474.73402	947.453487	-0.48524	-0.00023036	-0.28506	-0.00013533	-0.77029	-0.00036569	474.73376639857565	63.68	0.50901	64.42	64.088	64.597	0.74022					15	9	2	0	0	0	0.41409	1	24173	24173		24.021	24.021	1	1949000			33474	13423	24385	24558	32592	32592					-0.022341305257555177
LSGPACKSW	9	Unmodified	_LSGPACKSW_					0	0	0		ENST00000554578.5_1_12:57637331-57638104:-|nuORF	ENST00000554578.5_1_12:57637331-57638104:-|nuORF	ENST00000554578.5_1_12:57637331-57638104:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	474.73402	947.453487	-0.52579	-0.00024961	0.13389	6.3562E-05	-0.3919	-0.00018605	474.7339748424554	64.305	0.50687	64.305	64.09	64.597	0	-0.057152	0.00016683	NaN	24.021	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1833300			33475	13423	24385	24558							-0.022341305257555177
LSGPALAATPV	11	Unmodified	_LSGPALAATPV_					0	0	0			REV__ENST00000315302.6_1_4:183064065-183064260:-|nuORF	REV__ENST00000315302.6_1_4:183064065-183064260:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	499.18927001953125	2	498.78985	995.565146	-0.26069	-0.00013003	-0.059239	-2.9548E-05	-0.31993	-0.00015958	498.7897429491947	88.977	0.55748	88.977	88.663	89.221	0					17	10	2	0	0	0	0.053158	1	32668	32668		78.728	9.6231	1	2994000	+		33476	23531	24386	24559	32593	32593					0.06718627103032304
LSGPALAATPV	11	Unmodified	_LSGPALAATPV_					0	0	0			REV__ENST00000315302.6_1_4:183064065-183064260:-|nuORF	REV__ENST00000315302.6_1_4:183064065-183064260:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	498.78985	995.565146	-0.26069	-0.00013003	-0.059239	-2.9548E-05	-0.31993	-0.00015958	498.7897429491947	88.977	0.55748	88.977	88.663	89.221	0	0.048456	0.00016863	NaN	78.728	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2994000	+		33477	23531	24386	24559							0.06718627103032304
LSGPALAATPV	11	Unmodified	_LSGPALAATPV_					0	0	0			REV__ENST00000315302.6_1_4:183064065-183064260:-|nuORF	REV__ENST00000315302.6_1_4:183064065-183064260:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	498.78985	995.565146	-0.47075	-0.0002348	-0.34218	-0.00017068	-0.81293	-0.00040548	498.7897372768404	88.148	0.60737	88.88	88.621	89.228	0.7318	-0.048456	-0.00011363	NaN	78.728	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2945800	+		33478	23531	24386	24559							0.06718627103032304
LSGPFVQKW	9	Unmodified	_LSGPFVQKW_					0	0	0		ENST00000424203.5_1_21:34876433-34900844:-|nuORF;ENSG00000159131|ENST00000381815|GART	ENST00000424203.5_1_21:34876433-34900844:-|nuORF	ENST00000424203.5_1_21:34876433-34900844:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	531.2344970703125	2	531.292559	1060.57057	-0.66877	-0.00035531	-0.29576	-0.00015714	-0.96454	-0.00051245	531.2923038438905	76.496	1.2195	76.496	76.067	77.286	0					31	23	2	0	0	0	0.022401	1	27902	27902		110.67	54.498	1	4721800			33479	6351	24387	24560	32594	32594					0.042703506855104933
LSGQAYDEAY	10	Unmodified	_LSGQAYDEAY_					0	0	0		nc|ENSG00000101605|P52179-2|MYOM1;ENSG00000101605|ENST00000356443|MYOM1	nc|ENSG00000101605|P52179-2|MYOM1	nc|ENSG00000101605|P52179-2|MYOM1	MULTI-MSMS	A375_MHC_IP_R2	2	559.703857421875	2	558.745836	1115.47712	-1.0134	-0.00056622	0.73794	0.00041232	-0.27544	-0.0001539	558.7461747090894	51.858	0.45901	52.611	52.423	52.882	0.75225					20	8	3	0	0	0	0.62155	2	19561	19561;19581		19.257	7.0163	1	2686400			33480	2312	24388	24561	32595;32596	32595					-0.07600038278246757
LSGQKLSAPFF	11	Unmodified	_LSGQKLSAPFF_					0	0	0			REV__nc|ENSG00000290724|O14609|XKRY	REV__nc|ENSG00000290724|O14609|XKRY	MULTI-SECPEP	A375_MHC_IP_R2	2	598.2111206054688	2	597.829506	1193.64446	-0.5939	-0.00035505	2.6132	0.0015623	2.0193	0.0012072	597.8315051426833	67.098	0.3032	67.834	67.648	67.951	0.73631					9	5	2	0	0	0	0.94168	1	25447	25447		20.415	1.1575	1	971030	+		33481	27559	24389	24562	32597	32597					0.055382740571758404
LSGQKRQLCL	10	Unmodified	_LSGQKRQLCL_					0	0	0		ENST00000573057.1_1_17:7495442-7495673:-|nuORF	ENST00000573057.1_1_17:7495442-7495673:-|nuORF	ENST00000573057.1_1_17:7495442-7495673:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	382.95257568359375	3	382.553497	1144.63866	-0.27403	-0.00010483	-1.2146	-0.00046466	-1.4887	-0.00056949	382.55272027881574	49.144	0.76352	49.901	49.332	50.096	0.75736					22	14	2	0	0	0	0.70312	1	18437	18437		10.899	10.899	1	3798300			33482	13623	24390	24563	32598	32598					0.0721285227386943
LSGQPCMEPHP	11	Unmodified	_LSGQPCMEPHP_					0	0	0			REV__ENST00000573379.1_1_16:11035860-11036382:+|nuORF	REV__ENST00000573379.1_1_16:11035860-11036382:+|nuORF	MSMS	A375_MHC_IP_R2	2	598.2111206054688	2	598.265358	1194.51616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.175	1	67.911	67.411	68.411	0.73631								0	0	0	0.15541	1	25447	25447		17.113	4.0704	1		+		33483	26294	24391	24564	32599	32599					-0.0733135251987278
LSGRAVLDV	9	Unmodified	_LSGRAVLDV_					0	0	0		ENSG00000189350|ENST00000379558|TOGARAM2;nc|ENSG00000189350|Q6ZUX3-2|TOGARAM2;nc|ENSG00000189350|Q6ZUX3-3|TOGARAM2;ENST00000475900.1_1_2:29256310-29268401:+|nuORF	ENSG00000189350|ENST00000379558|TOGARAM2	ENSG00000189350|ENST00000379558|TOGARAM2	MULTI-SECPEP	A375_MHC_IP_R2	2	465.67401123046875	2	465.274367	928.53418	-0.89395	-0.00041593	0.22075	0.00010271	-0.6732	-0.00031322	465.2744626198373	49.87	0.45947	50.624	50.344	50.804	0.75406					15	8	2	0	0	0	0.47368	1	18746	18746		10.074	0	1	3723700			33484	8981	24392	24565	32600	32600					0.06705473788804284
LSGRGTRLY	9	Unmodified	_LSGRGTRLY_					0	0	0		ENST00000502781.5_1_4:147097488-147097572:+|nuORF	ENST00000502781.5_1_4:147097488-147097572:+|nuORF	ENST00000502781.5_1_4:147097488-147097572:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	511.9882507324219	2	511.790715	1021.56688	-0.95256	-0.00048751	-1.6188	-0.00082848	-2.5713	-0.001316	511.79068102744077	39.011	0.25613	39.786	39.658	39.914	0.77451					7	4	2	0	0	0	0.65246	1	14428	14428		21.747	16.991	1	904330			33485	12793	24393	24566	32601	32601					0.05695680911662748
LSGRLEESL	9	Unmodified	_LSGRLEESL_					0	0	0		nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-4|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;ENSG00000162869|ENST00000294952|PPP1R21	nc|ENSG00000162869|Q6ZMI0-3|PPP1R21	nc|ENSG00000162869|Q6ZMI0-3|PPP1R21	MULTI-MSMS	A375_MHC_IP_R1	1	502.6742858886719	2	502.274564	1002.53457	-0.23119	-0.00011612	-0.37066	-0.00018617	-0.60185	-0.00030229	502.2744034988174	71.298	0.56225	71.298	70.953	71.516	0					16	10	2	0	0	0	0.14922	1	25952	25952		41.84	3.8656	1	1346600			33486	14716	24394	24567	32602	32602					0.03340848718016787
LSGRLEESL	9	Unmodified	_LSGRLEESL_					0	0	0		nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-4|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;ENSG00000162869|ENST00000294952|PPP1R21	nc|ENSG00000162869|Q6ZMI0-3|PPP1R21	nc|ENSG00000162869|Q6ZMI0-3|PPP1R21	MULTI-MSMS	A375_MHC_IP_R2	2	502.6740417480469	2	502.274564	1002.53457	-0.58022	-0.00029143	-0.15077	-7.5728E-05	-0.73099	-0.00036716	502.27454351763095	70.491	0.45622	71.225	70.946	71.402	0.73421					14	8	2	0	0	0	0.12771	1	26735	26735		45.7	3.7441	1	2192500			33487	14716	24394	24567	32603	32603					0.03340848718016787
LSGRPYRHI	9	Unmodified	_LSGRPYRHI_					0	0	0		ENSG00000044446|ENST00000379942|PHKA2;ENST00000464455.1_1_X:18942433-18943881:-|nuORF	ENSG00000044446|ENST00000379942|PHKA2	ENSG00000044446|ENST00000379942|PHKA2	MULTI-SECPEP	A375_MHC_IP_R2	2	366.5976257324219	3	366.87708	1097.60941	-0.062065	-2.277E-05	1.9614	0.00071961	1.8994	0.00069684	367.212121168373	54.552	0.50832	55.303	55.118	55.626	0.75075					14	9	2	0	0	0	0.71541	1	20519	20519		7.609	0.50723	1	945710			33488	1185	24395	24568	32604	32604					0.06451076039888903
LSGRQWVVV	9	Unmodified	_LSGRQWVVV_					0	0	0		nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3;ENST00000570773.5_1_17:3828718-3833746:-|nuORF;ENST00000571245.5_1_17:3831639-3833719:-|nuORF	nc|ENSG00000074370|Q93084-4|ATP2A3	nc|ENSG00000074370|Q93084-4|ATP2A3	MSMS	A375_MHC_IP_R2	2	522.53564453125	2	522.303458	1042.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.196	1	82.939	82.439	83.439	0.74293								0	0	0	0.15283	1	31222	31222		16.942	2.104	1				33489	1583	24396	24569	32605	32605					0.07277155434076121
LSGRSILAKL	10	Unmodified	_LSGRSILAKL_					0	0	0		ENST00000404127.6_1_X:153173185-153186849:-|nuORF;ENSG00000089820|ENST00000350060|ARHGAP4;nc|ENSG00000089820|P98171-2|ARHGAP4;ENST00000470209.5_1_X:153173185-153178999:-|nuORF	ENST00000404127.6_1_X:153173185-153186849:-|nuORF	ENST00000404127.6_1_X:153173185-153186849:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	353.6289978027344	3	353.229119	1056.66553	-0.14789	-5.2241E-05	0.044052	1.5561E-05	-0.10384	-3.668E-05	353.22903763946704	27.356	0.45499	27.356	27.179	27.634	0					15	8	2	0	0	0	0.42595	1	8331	8331		32.616	3.1793	1	2444000			33490	1936	24397	24570	32606	32606					0.13946284156713773
LSGSDLQAWK	10	Unmodified	_LSGSDLQAWK_					0	0	0		ENST00000396504.6_1_22:41923400-41923763:-|nuORF	ENST00000396504.6_1_22:41923400-41923763:-|nuORF	ENST00000396504.6_1_22:41923400-41923763:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	369.9300842285156	3	368.860984	1103.56112	-0.087851	-3.2405E-05	0.35525	0.00013104	0.2674	9.8633E-05	368.86080837355524	22.815	0.91627	23.445	23.113	24.029	0.63014					40	17	4	0	0	0	0.69875	1	7256	7256		12.856	1.2246	1	8345200			33491	11491	24398	24571	32607	32607					0.013485376093285595
LSGSFIERERK	11	Unmodified	_LSGSFIERERK_					0	0	0			REV__ENSG00000080200|ENST00000389622|CRYBG3	REV__ENSG00000080200|ENST00000389622|CRYBG3	MSMS	A375_MHC_IP_R2	2	661.340087890625	2	661.364776	1320.715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.33	1	125.63	125.13	126.13	0.2951								0	0	0	0.15791	1	48823	48823		24.991	11.948	1		+		33492	16744	24399	24572	32608	32608					0.06746947374858792
LSGSKQQLSR	10	Unmodified	_LSGSKQQLSR_					0	0	0		ENSG00000256525|ENST00000539111|POLG2;ENST00000585141.5_1_17:62481823-62493086:-|nuORF	ENSG00000256525|ENST00000539111|POLG2	ENSG00000256525|ENST00000539111|POLG2	MULTI-MSMS	A375_MHC_IP_R2	2	368.2488708496094	3	368.543767	1102.60947	-0.070676	-2.6047E-05	-0.13207	-4.8674E-05	-0.20275	-7.4721E-05	368.5437697189445	23.474	0.60727	24.104	23.726	24.333	0.63014					12	5	3	0	0	0	0.71076	1	7667	7667		7.4771	0.7539	1	7094900			33493	9898	24400	24573	32609	32609					0.06227031249227366
LSGSLWPQI	9	Unmodified	_LSGSLWPQI_					0	0	0			REV__ENST00000464699.5_1_2:27666013-27666819:+|nuORF	REV__ENST00000464699.5_1_2:27666013-27666819:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	501.20538330078125	2	500.776742	999.538931	-0.25544	-0.00012792	-1.2133	-0.0006076	-1.4688	-0.00073552	500.77661559049375	56.456	0.66072	56.456	56.092	56.753	0					16	12	2	0	0	0	0.50702	1	20291	20291		19.257	13.051	1	2203400	+		33494	25017	24401	24574	32610	32610					0.03914357931569157
LSGSQAKLAL	10	Unmodified	_LSGSQAKLAL_					0	0	0			REV__ENSG00000196422|ENST00000356818|PPP1R26	REV__ENSG00000196422|ENST00000356818|PPP1R26	MULTI-SECPEP	A375_MHC_IP_R2	2	494.6427001953125	2	494.295299	986.576045	-0.61911	-0.00030603	0.50752	0.00025086	-0.11159	-5.5161E-05	494.2955959548639	50.633	0.40477	51.387	51.108	51.513	0.75406					10	7	2	0	0	0	0.87043	1	18960	18960		15.248	7.3383	1	1774700	+		33495	22196	24402	24575	32611	32611					0.08222029477315118
LSGSQAKLAL	10	Unmodified	_LSGSQAKLAL_					0	0	0			REV__ENSG00000196422|ENST00000356818|PPP1R26	REV__ENSG00000196422|ENST00000356818|PPP1R26	MULTI-MATCH	A375_MHC_IP_R1	1		2	494.295299	986.576045	-0.22222	-0.00010984	0.35755	0.00017674	0.13533	6.6894E-05	494.2955275874441	51.512	0.4567	51.512	51.168	51.625	0	0.062322	-8.3312E-05	NaN	15.248	13	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1656100	+		33496	22196	24402	24575							0.08222029477315118
LSGSRFRL	8	Unmodified	_LSGSRFRL_					0	0	0			REV__ENSG00000197380|ENST00000391916|DACT3	REV__ENSG00000197380|ENST00000391916|DACT3	MULTI-MSMS	A375_MHC_IP_R1	1	468.6745300292969	2	468.274701	934.534849	-0.2732	-0.00012793	-0.05279	-2.472E-05	-0.32599	-0.00015265	468.2745444734706	33.924	0.45501	33.924	33.648	34.103	0					11	8	2	0	0	0	0.73946	1	11134	11134		23.148	3.8914	1	3791600	+		33497	22282	24403	24576	32612	32612					0.06496313228524286
LSGSRFRL	8	Unmodified	_LSGSRFRL_					0	0	0			REV__ENSG00000197380|ENST00000391916|DACT3	REV__ENSG00000197380|ENST00000391916|DACT3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	468.274701	934.534849	-0.2732	-0.00012793	-0.05279	-2.472E-05	-0.32599	-0.00015265	468.2745444734706	33.924	0.45501	33.924	33.648	34.103	0	0.097025	0.00013505	NaN	23.148	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3791600	+		33498	22282	24403	24576							0.06496313228524286
LSGSTFARPW	10	Unmodified	_LSGSTFARPW_					0	0	0			REV__ENST00000544888.5_1_12:7077022-7079603:-|nuORF	REV__ENST00000544888.5_1_12:7077022-7079603:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	374.2767333984375	3	374.529458	1120.56654	0.77404	0.0002899	0.038256	1.4328E-05	0.81229	0.00030423	374.5305754944917	44.651	0.25625	44.651	44.42	44.676	0					6	4	2	0	0	0	0.83425	1	15566	15566		14.957	6.5129	1	736910	+		33499	25991	24404	24577	32613	32613					0.011082611918027396
LSGSVDLETF	10	Unmodified	_LSGSVDLETF_					0	0	0		ENSG00000169933|ENST00000675598|FRMPD4	ENSG00000169933|ENST00000675598|FRMPD4	ENSG00000169933|ENST00000675598|FRMPD4	MULTI-SECPEP	A375_MHC_IP_R2	2	534.6657104492188	2	534.266404	1066.51826	-1.0737	-0.00057363	0.08655	4.6241E-05	-0.98713	-0.00052739	534.2664810990987	56.363	1.1225	57.113	56.54	57.662	0.75015					26	21	2	0	0	0	0.42954	1	21313	21313		16.149	7.9936	1	3720400			33500	7454	24405	24578	32614	32614					-0.012342772387455625
LSGTGSKGSF	10	Unmodified	_LSGTGSKGSF_					0	0	0			REV__ENST00000452837.6_1_3:9406940-9408611:+|nuORF	REV__ENST00000452837.6_1_3:9406940-9408611:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	470.642578125	2	470.740357	939.46616	-0.71798	-0.00033798	1.8938	0.00089147	1.1758	0.00055349	470.7411179280372	40.535	0.50779	41.31	41.082	41.59	0.77451					16	9	2	0	0	0	0.63639	1	15109	15109		18.146	1.2041	1	3450400	+		33501	24904	24406	24579	32615	32615					-0.005993958618432771
LSGTLNAMKA	10	Unmodified	_LSGTLNAMKA_					0	0	0		ENST00000597347.5_1_3:180892826-180892943:+|nuORF	ENST00000597347.5_1_3:180892826-180892943:+|nuORF	ENST00000597347.5_1_3:180892826-180892943:+|nuORF	MSMS	A375_MHC_IP_R2	2	503.3082275390625	2	503.273509	1004.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.954	1	72.689	72.189	73.189	0.73421								0	0	0	0.14179	1	27304	27304		29.082	5.061	1				33502	13845	24407	24580	32616	32616					0.03038096708530702
LSGTNEQREQ	10	Unmodified	_LSGTNEQREQ_					0	0	0			REV__ENSG00000106246|ENST00000292478|PTCD1	REV__ENSG00000106246|ENST00000292478|PTCD1	MSMS	A375_MHC_IP_R1	1	581.211669921875	2	581.278366	1160.54218	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.038	1	45.038	44.538	45.538	0								0	0	0	0.15353	1	15741	15741		9.3831	0.63772	1		+		33503	17434	24408	24581	32617	32617					-0.03167043752364407
LSGTPIQNNV	10	Unmodified	_LSGTPIQNNV_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1;nc|ENSG00000095564|O14981-2|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-MSMS	A375_MHC_IP_R2	2	522.6954345703125	2	521.780013	1041.54547	-0.55751	-0.0002909	0.79801	0.00041638	0.24049	0.00012549	521.7802873173844	125.55	0.50409	125.85	125.72	126.23	0.2951					19	9	3	0	0	0	0.63336	1	49080	49080		18.373	0	1	36157000			33504	2045	24409	24582	32618	32618					0.026362510922808724
LSGTSPRL	8	Unmodified	_LSGTSPRL_					0	0	0			REV__ENST00000421223.5_1_7:44613483-44613774:-|nuORF	REV__ENST00000421223.5_1_7:44613483-44613774:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	415.6072082519531	2	415.74016	829.465767	0.064988	2.7018E-05	0.36169	0.00015037	0.42668	0.00017739	415.74014400135496	27.946	0.35238	27.946	27.786	28.138	0					9	6	2	0	0	0	0.93777	1	8596	8596		17.113	0	1	1395400	+		33505	24587	24410	24583	32619	32619					0.044212292089468974
LSGTSRPRTW	10	Unmodified	_LSGTSRPRTW_					0	0	0			REV__nc|ENSG00000179750|Q9UH17-2|APOBEC3B	REV__nc|ENSG00000179750|Q9UH17-2|APOBEC3B	MULTI-MSMS	A375_MHC_IP_R1	1	580.7325439453125	2	580.812179	1159.60981	0.3669	0.0002131	-0.39424	-0.00022898	-0.027343	-1.5881E-05	580.8116781467387	44.908	0.45475	44.908	44.626	45.081	0					17	8	3	0	0	0	0.70741	1	15753	15753		14.838	0.93222	1	2919500	+		33506	27384	24411	24584	32620	32620					0.03638450969083351
LSGTWQQCP	9	Unmodified	_LSGTWQQCP_					0	0	0		ENST00000317114.1_1_18:3594184-3596682:+|nuORF	ENST00000317114.1_1_18:3594184-3596682:+|nuORF	ENST00000317114.1_1_18:3594184-3596682:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	510.97625732421875	2	510.234384	1018.45422	-0.66709	-0.00034037	3.3617	0.0017153	2.6946	0.0013749	510.7354588410417	87.789	0.30457	88.521	88.316	88.621	0.7318					6	5	2	0	0	0	0.62767	1	33343	33343		16.942	2.104	1	497480			33507	10665	24412	24585	32621	32621					-0.054273358766863566
LSGVETTQVAA	11	Unmodified	_LSGVETTQVAA_					0	0	0			REV__ENST00000546525.5_1_6:169959286-169959583:-|nuORF	REV__ENST00000546525.5_1_6:169959286-169959583:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	538.684814453125	2	538.285128	1074.5557	-1.0017	-0.00053921	-0.22423	-0.0001207	-1.2259	-0.00065991	538.2850908816736	36.037	0.45926	36.8	36.486	36.946	0.76338					15	8	2	0	0	0	0.9574	1	13147	13147		10.151	2.5416	1	2722200	+		33508	26000	24413	24586	32622	32622					0.0214081402687043
LSGVETTQVAA	11	Unmodified	_LSGVETTQVAA_					0	0	0			REV__ENST00000546525.5_1_6:169959286-169959583:-|nuORF	REV__ENST00000546525.5_1_6:169959286-169959583:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	538.285128	1074.5557	-0.92395	-0.00049735	-0.60987	-0.00032828	-1.5338	-0.00082563	538.2852346363503	36.858	0.40451	36.858	36.541	36.945	0	0.028951	-0.00027498	NaN	10.151	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1573500	+		33509	26000	24413	24586							0.0214081402687043
LSGVIGLLKWG	11	Unmodified	_LSGVIGLLKWG_					0	0	0			REV__nc|ENSG00000198685|O15544|LINC01565	REV__nc|ENSG00000198685|O15544|LINC01565	MSMS	A375_MHC_IP_R2	2	381.6315612792969	3	381.569253	1141.68593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.567	1	30.265	29.765	30.765	0.69872								0	0	0	0.16275	1	10332	10332		4.4062	0.81909	1		+		33510	27449	24414	24587	32623	32623					0.12075454816522324
LSGVIVKEDV	10	Unmodified	_LSGVIVKEDV_					0	0	0			REV__nc|ENSG00000104635|Q15043-2|SLC39A14	REV__nc|ENSG00000104635|Q15043-2|SLC39A14	MULTI-SECPEP	A375_MHC_IP_R2	2	353.30560302734375	3	353.541252	1057.60193	-0.35278	-0.00012472	-0.19485	-6.8888E-05	-0.54763	-0.00019361	353.541227105382	65.408	0.15311	66.147	66.069	66.222	0.73811					4	2	2	0	0	0	0.78945	1	24785	24785		12.175	0	1	465650	+		33511	17329	24415	24588	32624	32624					0.0754287892893899
LSGVLLSEYL	10	Unmodified	_LSGVLLSEYL_					0	0	0			REV__nc|ENSG00000104812|P13807-2|GYS1	REV__nc|ENSG00000104812|P13807-2|GYS1	MULTI-MSMS	A375_MHC_IP_R2	2	547.7103881835938	2	547.310615	1092.60668	-0.7701	-0.00042149	0.04854	2.6567E-05	-0.72156	-0.00039492	547.3105760752916	78.035	2.3404	78.778	78.315	80.656	0.74293					140	45	7	0	0	0	0.053475	1	29778	29778		74.929	6.8483	1	222770000	+		33512	17339	24416	24589	32625	32625					0.0640776307170654
LSGWAKFLDP	10	Unmodified	_LSGWAKFLDP_					0	0	0		USP8|p.P652L|1|0.27|ENSG00000138592|chr15:50489865-50489865|C/T|missense_variant	USP8|p.P652L|1|0.27|ENSG00000138592|chr15:50489865-50489865|C/T|missense_variant	USP8|p.P652L|1|0.27|ENSG00000138592|chr15:50489865-50489865|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	377.9619140625	3	378.537842	1132.5917	0.30543	0.00011562	0.18252	6.9093E-05	0.48795	0.00018471	378.53668465644716	25.359	0.96417	25.359	25.002	25.966	0					49	18	4	0	0	0	0.74754	1	7330	7330		14.957	3.8919	1	6483800			33513	30131	24417	24590	32626	32626					0.030703159943641367
LSGWIVFHN	9	Unmodified	_LSGWIVFHN_					0	0	0			REV__ENSG00000068650|ENST00000375645|ATP11A;REV__ENSG00000101974|ENST00000682941|ATP11C	REV__ENSG00000101974|ENST00000682941|ATP11C	MULTI-SECPEP	A375_MHC_IP_R1	1	357.6411437988281	3	358.190665	1071.55016	0.019665	7.0439E-06	1.2196	0.00043685	1.2393	0.00044389	358.19049274675734	34.222	0.50581	34.222	34.001	34.507	0					18	9	3	0	0	0	0.77003	1	11236	11236		7.609	0	1	1102100	+		33514	17195;16542	24418	24591	32627	32627					0.017251800257099603
LSGYCCVAALT	11	Unmodified	_LSGYCCVAALT_					0	0	0		nc|ENSG00000157992|Q53RY4-2|KRTCAP3;ENSG00000157992|ENST00000288873|KRTCAP3	nc|ENSG00000157992|Q53RY4-2|KRTCAP3	nc|ENSG00000157992|Q53RY4-2|KRTCAP3	MULTI-SECPEP	A375_MHC_IP_R2	2	551.1583251953125	2	550.759378	1099.5042	-0.67943	-0.0003742	-0.6004	-0.00033068	-1.2798	-0.00070488	550.7592427979989	47.992	1.0597	48.753	48.429	49.489	0.76128					40	20	4	0	0	0	0.88813	1	17958	17958		14.405	0	1	18017000			33515	6280	24419	24592	32628	32628					-0.041569692630901045
LSGYRPYL	8	Unmodified	_LSGYRPYL_					0	0	0		nc|ENSG00000164823|Q9Y236|OSGIN2;ENSG00000164823|ENST00000451899|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	MULTI-MSMS	A375_MHC_IP_R1	1	485.163330078125	2	484.763635	967.512717	-0.25282	-0.00012256	-0.38028	-0.00018435	-0.6331	-0.0003069	484.7634453424012	77.628	0.6101	77.628	77.336	77.946	0					18	11	2	0	0	0	0.7256	1	28330	28330		26.884	6.0124	1	1661600			33516	6884	24420	24593	32629	32629					0.027660887600859496
LSGYRPYL	8	Unmodified	_LSGYRPYL_					0	0	0		nc|ENSG00000164823|Q9Y236|OSGIN2;ENSG00000164823|ENST00000451899|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	MULTI-SECPEP	A375_MHC_IP_R2	2	485.1633605957031	2	484.763635	967.512717	-0.59382	-0.00028786	0.36648	0.00017766	-0.22734	-0.00011021	484.76377302727457	76.765	0.55495	77.505	77.25	77.805	0.74052					17	10	2	0	0	0	0.90775	1	29165	29165		26.884	12.302	1	1810900			33517	6884	24420	24593	32630	32630					0.027660887600859496
LSGYVIMW	8	Unmodified	_LSGYVIMW_					0	0	0		STXBP5L|p.I824*|1|0.32|ENSG00000145087|chr3:121381342-121381343|TA/-|frameshift_variant;STXBP5L|p.A1171Ffs*5|1|0.07|ENSG00000145087|chr3:121418548-121418549|-/TTTGTCA|frameshift_variant;ENSG00000145087|ENST00000471454|STXBP5L;nc|ENSG00000145087|Q9Y2K9|STXBP5L;nc|ENSG00000164506|Q5T5C0-3|STXBP5;nc|ENSG00000164506|Q5T5C0-2|STXBP5;ENSG00000164506|ENST00000321680|STXBP5	STXBP5L|p.I824*|1|0.32|ENSG00000145087|chr3:121381342-121381343|TA/-|frameshift_variant;nc|ENSG00000164506|Q5T5C0-3|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	MSMS	A375_MHC_IP_R2	2	484.67138671875	2	484.749139	967.483725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.977	1	98.737	98.237	99.237	0.75977								0	0	0	0.16876	1	37179	37179		20.871	2.7362	1				33518	5537;6845	24421	24594	32631	32631					-0.001317718605605478
LSHADEKLLEV	11	Unmodified	_LSHADEKLLEV_					0	0	0			REV__VAV3|p.G630E|1|0.1|ENSG00000134215|chr1:107642644-107642644|C/T|missense_variant	REV__VAV3|p.G630E|1|0.1|ENSG00000134215|chr1:107642644-107642644|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	419.2701721191406	3	418.562715	1252.66632	0.063264	2.648E-05	0.94502	0.00039555	1.0083	0.00042203	418.5631067564568	19.628	0.50879	19.628	19.42	19.928	0					22	9	3	0	0	0	0.70919	1	5016	5016		14.838	5.5941	1	4096400	+		33519	28979	24422	24595	32632	32632					0.05009034015074576
LSHCRKEGLIY	11	Unmodified	_LSHCRKEGLIY_					0	0	0			REV__nc|ENSG00000182352|Q96MU5|CD300LD-AS1	REV__nc|ENSG00000182352|Q96MU5|CD300LD-AS1	MSMS	A375_MHC_IP_R2	2	659.682861328125	2	659.850447	1317.68634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.92	1	105.68	105.18	106.18	0.76308								0	0	0	0.16108	1	39689	39689		13.042	2.2185	1		+		33520	27394	24423	24596	32633	32633					0.040205064740575835
LSHDPILF	8	Unmodified	_LSHDPILF_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	A375_MHC_IP_R2	2	471.6578674316406	2	471.258185	940.501818	-0.54168	-0.00025527	-0.13465	-6.3455E-05	-0.67633	-0.00031872	471.25798239191016	78.451	0.60928	79.196	78.88	79.489	0.74474					22	11	3	0	0	0	0.38921	1	29782	29782		53.576	0	1	3649000			33521	3978	24424	24597	32634	32634					0.029186863858058132
LSHDVHSTY	9	Unmodified	_LSHDVHSTY_					0	0	0		nc|ENSG00000197658|Q8N4F4-1|SLC22A24	nc|ENSG00000197658|Q8N4F4-1|SLC22A24	nc|ENSG00000197658|Q8N4F4-1|SLC22A24	MULTI-SECPEP	A375_MHC_IP_R1	1	529.9620361328125	2	529.748713	1057.48287	-0.16991	-9.0007E-05	-3.9953	-0.0021165	-4.1652	-0.0022065	529.7459930322428	49.452	0.30595	49.452	49.285	49.591	0					7	5	2	0	0	0	0.62767	1	17524	17524		16.942	0	1	684870			33522	14847	24425	24598	32635	32635					-0.04356894975899195
LSHEGVLQ	8	Unmodified	_LSHEGVLQ_					0	0	0		nc|ENSG00000163749|Q5M9N0|CCDC158;ENSG00000163749|ENST00000682701|CCDC158;nc|ENSG00000163749|Q5M9N0-3|CCDC158;nc|ENSG00000163749|Q5M9N0-2|CCDC158	nc|ENSG00000163749|Q5M9N0|CCDC158	nc|ENSG00000163749|Q5M9N0|CCDC158	MULTI-SECPEP	A375_MHC_IP_R2	2	882.3125	1	882.467958	881.460681	-0.59539	-0.00052541	-0.076239	-6.7279E-05	-0.67163	-0.00059269	882.467823198057	55.575	0.60978	56.326	56.084	56.694	0.75075					30	11	3	0	0	0	0.8957	1	21007	21007		28.487	5.3384	1	16318000			33523	6714	24426	24599	32636	32636					0.015209253463240202
LSHEVQLYY	9	Unmodified	_LSHEVQLYY_					0	0	0			REV__PDCD7|p.A434V|1|0.41|ENSG00000090470|chr15:65119409-65119409|G/A|missense_variant	REV__PDCD7|p.A434V|1|0.41|ENSG00000090470|chr15:65119409-65119409|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	576.65771484375	2	576.290214	1150.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.088	1	78.831	78.331	79.331	0.74293								0	0	0	0.15486	1	29654	29654		7.2892	0.56607	1		+		33524	27751	24427	24600	32637	32637					-0.0033857824791994062
LSHFFWFHVL	10	Unmodified	_LSHFFWFHVL_					0	0	0			REV__ENST00000510164.5_1_5:175775015-175775063:-|nuORF	REV__ENST00000510164.5_1_5:175775015-175775063:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	444.1788635253906	3	444.901114	1331.68151	-0.30408	-0.00013528	3.0915	0.0013754	2.7875	0.0012401	444.9028471867079	32.575	0.30088	32.575	32.485	32.785	0					6	5	2	0	0	0	0.93615	1	10547	10547		0.13989	0	1	733780	+		33525	25598	24428	24601	32638	32638					0.02893990393590684
LSHFLGRKL	9	Unmodified	_LSHFLGRKL_					0	0	0			REV__RITA1|p.S199F|1|0.28|ENSG00000139405|chr12:113191603-113191603|C/T|missense_variant	REV__RITA1|p.S199F|1|0.28|ENSG00000139405|chr12:113191603-113191603|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	357.9378662109375	3	357.553826	1069.63965	0.048066	1.7186E-05	-0.10429	-3.729E-05	-0.056226	-2.0104E-05	357.5537055011811	39.375	0.65797	39.375	39.136	39.794	0					22	12	3	0	0	0	0.26169	1	13405	13405		33.445	10.709	1	6892900	+		33526	27890	24429	24602	32639	32639					0.10761434705068496
LSHFQSLSY	9	Unmodified	_LSHFQSLSY_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	A375_MHC_IP_R1	1	540.6890258789062	2	541.269281	1080.52401	-0.50316	-0.00027234	0.85278	0.00046158	0.34962	0.00018924	541.7711829852504	54.426	0.25345	54.426	54.314	54.567	0					6	4	2	0	0	0	0.69507	1	19394	19394		9.3831	3.1773	1	2100000			33527	4099;14587	24430	24603	32640	32640					-0.01303133936426093
LSHGNLIRW	9	Unmodified	_LSHGNLIRW_					0	0	0			REV__nc|ENSG00000168924|O95202-3|LETM1	REV__nc|ENSG00000168924|O95202-3|LETM1	MULTI-SECPEP	A375_MHC_IP_R1	1	365.27325439453125	3	365.873447	1094.59851	0.20594	7.5349E-05	-0.98043	-0.00035871	-0.77448	-0.00028336	365.8729727462267	57.949	0.55901	57.949	57.669	58.228	0					17	10	2	0	0	0	0.76187	1	20730	20730		4.5289	0	1	3145900	+		33528	20896	24431	24604	32641	32641					0.05499673665599403
LSHGQCFVR	9	Unmodified	_LSHGQCFVR_					0	0	0			REV__ENST00000413366.7_1_17:64803756-64804182:+|nuORF	REV__ENST00000413366.7_1_17:64803756-64804182:+|nuORF	MSMS	A375_MHC_IP_R2	2	523.7012939453125	2	523.763643	1045.51273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.834	1	100.6	100.1	101.1	0.76278								0	0	0	0.15486	1	37867	37867		10.824	2.2306	1		+		33529	24494	24432	24605	32642	32642					-0.008202345115705612
LSHHIGPRLG	10	Unmodified	_LSHHIGPRLG_					0	0	0			REV__nc|ENSG00000102316|Q9UNF1-2|MAGED2	REV__nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-SECPEP	A375_MHC_IP_R1	1	362.46771240234375	3	362.87708	1085.60941	0.70673	0.00025646	-0.5007	-0.00018169	0.20604	7.4766E-05	362.87664423793586	49.159	0.25122	49.159	48.933	49.184	0					6	4	2	0	0	0	0.93194	1	17338	17338		5.4027	2.6675	1	704150	+		33530	17215	24433	24606	32643	32643					0.07003076039904954
LSHHIGPRLG	10	Unmodified	_LSHHIGPRLG_					0	0	0			REV__nc|ENSG00000102316|Q9UNF1-2|MAGED2	REV__nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MATCH	A375_MHC_IP_R2	2		3	362.87708	1085.60941	-0.0099476	-3.6097E-06	-0.55733	-0.00020224	-0.56728	-0.00020585	362.87693411231174	48.07	0.25078	48.832	48.682	48.933	0.76127	-0.16346	-2.3992E-05	NaN	5.4027	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	855770	+		33531	17215	24433	24606							0.07003076039904954
LSHHRCCRSY	10	Unmodified	_LSHHRCCRSY_					0	0	0		LCE3B|p.H64Y|1|0.59|ENSG00000187238|chr1:152614000-152614000|C/T|missense_variant	LCE3B|p.H64Y|1|0.59|ENSG00000187238|chr1:152614000-152614000|C/T|missense_variant	LCE3B|p.H64Y|1|0.59|ENSG00000187238|chr1:152614000-152614000|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	631.3525390625	2	631.287491	1260.56043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.434	1	72.434	71.934	72.934	0								0	0	0	0.15451	1	26352	26352		6.2058	0	1				33532	14288	24434	24607	32644	32644					-0.059429035830135035
LSHIKNNK	8	Unmodified	_LSHIKNNK_					0	0	0			REV__ENST00000369936.2_1_1:109730792-109745631:+|nuORF	REV__ENST00000369936.2_1_1:109730792-109745631:+|nuORF	MSMS	A375_MHC_IP_R1	1	477.32037353515625	2	477.279983	952.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.085	1	53.085	52.585	53.585	0								0	0	0	0.16876	1	18910	18910		6.7232	1.4925	1		+		33533	17953	24435	24608	32645	32645					0.06724295882941078
LSHIVKEESD	10	Unmodified	_LSHIVKEESD_					0	0	0		nc|ENSG00000154957|P17022-2|ZNF18;ENSG00000154957|ENST00000580306|ZNF18	nc|ENSG00000154957|P17022-2|ZNF18	nc|ENSG00000154957|P17022-2|ZNF18	MULTI-SECPEP	A375_MHC_IP_R2	2	386.5926513671875	3	386.199666	1155.57717	-0.14827	-5.7262E-05	2.4009	0.00092724	2.2527	0.00086998	386.2014360946659	32.128	0.35706	32.865	32.755	33.112	0.73692					9	6	2	0	0	0	0.90513	1	11472	11472		7.4771	3.6007	1	917510			33534	6118	24436	24609	32646	32646					0.005601990555760494
LSHLFHQPPH	10	Unmodified	_LSHLFHQPPH_					0	0	0			REV__ENST00000418081.5_1_2:208442294-208442369:+|nuORF	REV__ENST00000418081.5_1_2:208442294-208442369:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	404.9208984375	3	404.880602	1211.61998	-0.46236	-0.0001872	0.52904	0.0002142	0.066678	2.6997E-05	404.88081507094324	60.958	0.40653	60.958	60.821	61.227	0					20	7	3	0	0	0	0.72061	1	21927	21927		3.0723	3.0723	1	2552000	+		33535	24551	24437	24610	32647	32647					0.02263058694325082
LSHLLKPRF	9	Unmodified	_LSHLLKPRF_					0	0	0		ENST00000527115.1_1_11:74203099-74203183:-|nuORF	ENST00000527115.1_1_11:74203099-74203183:-|nuORF	ENST00000527115.1_1_11:74203099-74203183:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	556.4927978515625	2	555.842751	1109.67095	-0.4509	-0.00025063	-0.079716	-4.4309E-05	-0.53062	-0.00029494	555.8426247620821	72.643	1.2681	72.643	72.271	73.539	0					63	24	4	0	0	0	0.72761	1	26628	26628		7.2892	7.2892	1	21496000			33536	13091	24438	24611	32648	32648					0.12050007739162538
LSHLLSQALS	10	Unmodified	_LSHLLSQALS_					0	0	0			REV__nc|ENSG00000144554|Q9BXW9-3|FANCD2	REV__nc|ENSG00000144554|Q9BXW9-3|FANCD2	MULTI-MSMS	A375_MHC_IP_R1	1	357.2486572265625	3	356.873113	1067.59751	0.17141	6.1173E-05	-0.38686	-0.00013806	-0.21545	-7.6889E-05	356.8730469818582	20.664	0.76486	20.664	20.283	21.048	0					19	14	2	0	0	0	0.7086	1	5382	5382		8.4443	0	1	1049900	+		33537	19430	24439	24612	32649	32649					0.06641414506043475
LSHLNRFPA	9	Unmodified	_LSHLNRFPA_					0	0	0		nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	MULTI-SECPEP	A375_MHC_IP_R2	2	351.9292907714844	3	352.197931	1053.57196	-0.60263	-0.00021224	-0.066396	-2.3384E-05	-0.66903	-0.00023563	352.1979187055926	38.349	0.61155	39.124	38.739	39.351	0.77451					16	11	2	0	0	0	0.71541	1	14083	14083		11.495	11.495	1	7903400			33538	6340	24440	24613	32650	32650					0.04731984774275588
LSHNELSFVP	10	Unmodified	_LSHNELSFVP_					0	0	0		ENSG00000132000|ENST00000588872|PODNL1	ENSG00000132000|ENST00000588872|PODNL1	ENSG00000132000|ENST00000588872|PODNL1	MULTI-MSMS	A375_MHC_IP_R1	1	381.5833740234375	3	381.532868	1141.57677	0.46414	0.00017709	-0.33412	-0.00012748	0.13002	4.9606E-05	381.5327615025858	40.62	0.50666	40.62	40.406	40.913	0					18	9	3	0	0	0	0.6502	1	14005	14005		14.957	1.4385	1	3072300			33539	4365	24441	24614	32651	32651					0.011648241263856107
LSHNRISHL	9	Unmodified	_LSHNRISHL_					0	0	0		ENSG00000101916|ENST00000218032|TLR8;nc|ENSG00000101916|Q9NR97-2|TLR8	ENSG00000101916|ENST00000218032|TLR8	ENSG00000101916|ENST00000218032|TLR8	MULTI-SECPEP	A375_MHC_IP_R2	2	358.913330078125	3	359.536835	1075.58868	-0.51093	-0.0001837	-2.8415	-0.0010216	-3.3525	-0.0012053	359.870479084155	23.415	0.35243	24.045	23.777	24.129	0.63014					9	6	2	0	0	0	0.71071	1	7489	7489		19.362	7.1213	1	3593200			33540	2336	24442	24615	32652	32652					0.05390485660223021
LSHPESKQFYF	11	Unmodified	_LSHPESKQFYF_					0	0	0			REV__nc|ENSG00000184047|Q9NR28-2|DIABLO	REV__nc|ENSG00000184047|Q9NR28-2|DIABLO	MSMS	A375_MHC_IP_R2	2	461.6426696777344	3	461.562827	1381.66665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.451	1	38.222	37.722	38.722	0.7709								0	0	0	0.16191	1	13703	13703		4.4062	0.28952	1		+		33541	27404	24443	24616	32653	32653					-0.008915462650520567
LSHPFAVTLY	10	Unmodified	_LSHPFAVTLY_					0	0	0		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MSMS	A375_MHC_IP_R1	1	574.2422485351562	2	574.310949	1146.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.56	1	101.56	101.06	102.06	0								0	0	0	0.15332	1	37323	37323		10.074	0.6908	1				33542	3844	24444	24617	32654	32654					0.03990602511430552
LSHPISSSV	9	Unmodified	_LSHPISSSV_					0	0	0		LNPEP|p.S526L|1|0.2|ENSG00000113441|chr5:96998069-96998069|C/T|missense_variant	LNPEP|p.S526L|1|0.2|ENSG00000113441|chr5:96998069-96998069|C/T|missense_variant	LNPEP|p.S526L|1|0.2|ENSG00000113441|chr5:96998069-96998069|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	463.99603271484375	2	463.750724	925.486896	-0.048359	-2.2427E-05	-1.1841	-0.00054912	-1.2324	-0.00057154	463.7507625643855	43.143	0.50871	43.143	42.942	43.451	0					14	9	2	0	0	0	0.74412	1	15092	15092		6.2058	0.47393	1	972140			33543	14306	24445	24618	32655	32655					0.02117194517813914
LSHPISSSV	9	Unmodified	_LSHPISSSV_					0	0	0		LNPEP|p.S526L|1|0.2|ENSG00000113441|chr5:96998069-96998069|C/T|missense_variant	LNPEP|p.S526L|1|0.2|ENSG00000113441|chr5:96998069-96998069|C/T|missense_variant	LNPEP|p.S526L|1|0.2|ENSG00000113441|chr5:96998069-96998069|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	463.750724	925.486896	-0.51576	-0.00023918	-1.4138	-0.00065565	-1.9295	-0.00089483	463.75049092392015	42.343	0.40868	43.115	42.91	43.319	0.7724	-0.0139	-6.9862E-05	NaN	6.2058	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	871790			33544	14306	24445	24618							0.02117194517813914
LSHQEKLLL	9	Unmodified	_LSHQEKLLL_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MSMS	A375_MHC_IP_R1	1	540.7290649414062	2	540.824224	1079.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.54	1	131.54	131.04	132.04	0								0	0	0	0.083165	1	50712	50712		46.021	2.1627	1				33545	1262	24446	24619	32656	32656					0.09726291402762399
LSHQSGNVEL	10	Unmodified	_LSHQSGNVEL_					0	0	0			REV__nc|ENSG00000168685|P16871-4|IL7R	REV__nc|ENSG00000168685|P16871-4|IL7R	MULTI-MSMS	A375_MHC_IP_R2	2	542.6732788085938	2	542.275095	1082.53564	-0.75935	-0.00041178	0.012705	6.8899E-06	-0.74665	-0.00040489	542.2745512368588	87.951	1.0643	88.683	88.266	89.331	0.7318					28	20	2	0	0	0	0.6502	1	33450	33450		17.113	0.1706	1	3985200	+		33546	20877	24447	24620	32657	32657					-0.0023293691308481357
LSHQSGNVEL	10	Unmodified	_LSHQSGNVEL_					0	0	0			REV__nc|ENSG00000168685|P16871-4|IL7R	REV__nc|ENSG00000168685|P16871-4|IL7R	MULTI-MATCH	A375_MHC_IP_R1	1		2	542.275095	1082.53564	-0.4758	-0.00025802	0.17953	9.7353E-05	-0.29628	-0.00016066	542.2749779999773	88.728	0.66011	88.728	88.409	89.069	0	0.022615	4.4417E-05	NaN	17.113	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4116800	+		33547	20877	24447	24620							-0.0023293691308481357
LSHRHSKCI	9	Unmodified	_LSHRHSKCI_					0	0	0		ALMS1|p.S2718L|1|0.32|ENSG00000116127|chr2:73490112-73490112|C/T|missense_variant	ALMS1|p.S2718L|1|0.32|ENSG00000116127|chr2:73490112-73490112|C/T|missense_variant	ALMS1|p.S2718L|1|0.32|ENSG00000116127|chr2:73490112-73490112|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	360.2392578125	3	360.862554	1079.56583	-0.17944	-6.4751E-05	-3.2358	-0.0011677	-3.4152	-0.0012324	361.1953436721518	26.45	0.50661	26.45	26.221	26.728	0					16	9	3	0	0	0	0.67483	1	7897	7897		10.151	0.6066	1	1498500			33548	106	24448	24621	32658	32658					0.02923143271095796
LSHRQELRGW	10	Unmodified	_LSHRQELRGW_					0	0	0		ENST00000570036.5_1_16:84513521-84531159:-|nuORF;ENSG00000140950|ENST00000343629|MEAK7	ENST00000570036.5_1_16:84513521-84531159:-|nuORF	ENST00000570036.5_1_16:84513521-84531159:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	428.166015625	3	427.898544	1280.6738	-0.0021832	-9.3418E-07	2.1214	0.00090776	2.1193	0.00090683	427.8995706584847	51.932	0.3574	51.932	51.728	52.085	0					10	6	2	0	0	0	0.93961	1	18498	18498		1.5923	0.26264	1	1549400			33549	5197	24449	24622	32659	32659					0.04469231126017803
LSHTKLKTRL	10	Unmodified	_LSHTKLKTRL_					0	0	0			REV__ENST00000477908.1_1_1:109358795-109359618:-|nuORF	REV__ENST00000477908.1_1_1:109358795-109359618:-|nuORF	MSMS	A375_MHC_IP_R2	2	598.88037109375	2	598.877322	1195.74009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.991	1	91.725	91.225	92.225	0.7345								0	0	0	0.15435	1	34622	34622		6.7232	2.7788	1		+		33550	25202	24450	24623	32660	32660					0.15005046968076385
LSHTRRPPPPP	11	Unmodified	_LSHTRRPPPPP_					0	0	0			REV__nc|ENSG00000162522|Q9P206|NHSL3	REV__nc|ENSG00000162522|Q9P206|NHSL3	MULTI-SECPEP	A375_MHC_IP_R1	1	419.2701721191406	3	418.907039	1253.69929	0.13152	5.5097E-05	-0.98009	-0.00041057	-0.84857	-0.00035547	418.9065512887419	19.954	0.20304	19.954	19.827	20.03	0					5	3	2	0	0	0	0.9907	1	5016	5016		9.2438	0	1	1611700	+		33551	20263	24451	24624	32661	32661					0.08258705648449904
LSHVGLLR	8	Unmodified	_LSHVGLLR_					0	0	0			REV__ENSG00000167103|ENST00000388747|PIP5KL1	REV__ENSG00000167103|ENST00000388747|PIP5KL1	MULTI-SECPEP	A375_MHC_IP_R1	1	448.1792907714844	2	447.779619	893.544686	-0.55114	-0.00024679	-0.10118	-4.5306E-05	-0.65232	-0.0002921	447.7795782693229	29.227	0.30552	29.227	29.047	29.353	0					8	5	2	0	0	0	0.972	1	9147	9147		6.7232	0	1	3974600	+		33552	20731	24452	24625	32662	32662					0.09365501233878604
LSHVNMNRIW	10	Unmodified	_LSHVNMNRIW_					0	0	0			REV__nc|ENSG00000135108|O94952|FBXO21	REV__nc|ENSG00000135108|O94952|FBXO21	MSMS	A375_MHC_IP_R2	2	423.9545593261719	3	423.88888	1268.64481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.824	1	24.454	23.954	24.954	0.63014								0	0	0	0.14983	1	7727	7727		11.518	1.5016	1		+		33553	18824	24453	24626	32663	32663					0.021233705053873564
LSHYKLSA	8	Unmodified	_LSHYKLSA_					0	0	0		nc|ENSG00000124225|Q969W9-3|PMEPA1;nc|ENSG00000124225|Q969W9-2|PMEPA1;ENSG00000124225|ENST00000341744|PMEPA1	nc|ENSG00000124225|Q969W9-3|PMEPA1	nc|ENSG00000124225|Q969W9-3|PMEPA1	MULTI-SECPEP	A375_MHC_IP_R1	1	460.1554870605469	2	459.75581	917.497067	-0.040148	-1.8458E-05	-0.53126	-0.00024425	-0.57141	-0.00026271	459.7556581770691	42.764	0.35442	42.764	42.537	42.891	0					10	6	2	0	0	0	0.77651	1	14838	14838		20.454	1.1966	1	4230300			33554	3888	24454	24627	32664	32664					0.035018022430335805
LSHYKLSA	8	Unmodified	_LSHYKLSA_					0	0	0		nc|ENSG00000124225|Q969W9-3|PMEPA1;nc|ENSG00000124225|Q969W9-2|PMEPA1;ENSG00000124225|ENST00000341744|PMEPA1	nc|ENSG00000124225|Q969W9-3|PMEPA1	nc|ENSG00000124225|Q969W9-3|PMEPA1	MULTI-SECPEP	A375_MHC_IP_R2	2	460.1556701660156	2	459.75581	917.497067	-0.35944	-0.00016525	-0.20232	-9.3018E-05	-0.56176	-0.00025827	459.75576350729045	41.959	0.40833	42.734	42.504	42.913	0.77451					12	7	2	0	0	0	0.77651	1	15585	15585		26.884	0	1	3126800			33555	3888	24454	24627	32665	32665					0.035018022430335805
LSHYLPDLQ	9	Unmodified	_LSHYLPDLQ_					0	0	0		ENST00000563160.5_1_15:45879945-45897659:+|nuORF;nc|ENSG00000104164|Q9UL45-2|BLOC1S6;ENST00000568816.5_1_15:45879846-45893495:+|nuORF;ENSG00000104164|ENST00000220531|BLOC1S6	ENST00000563160.5_1_15:45879945-45897659:+|nuORF	ENST00000563160.5_1_15:45879945-45897659:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	363.2853088378906	3	362.525713	1084.55531	-0.35251	-0.0001278	-0.86543	-0.00031374	-1.2179	-0.00044154	362.5256091973421	34.374	2.133	35.126	34.904	37.037	0.75225					69	41	2	0	0	0	0.62767	1	13192	13192		16.149	7.1729	1	2358300			33556	2489	24455	24628	32666	32666					0.016414390976706272
LSIAGIFKEV	10	Unmodified	_LSIAGIFKEV_					0	0	0		nc|ENSG00000080189|Q9NQQ7-2|SLC35C2;ENSG00000080189|ENST00000372230|SLC35C2;nc|ENSG00000080189|Q9NQQ7-3|SLC35C2;ENST00000480329.5_1_20:44979343-44983832:-|nuORF;ENST00000493599.1_1_20:44979343-44980935:-|nuORF	nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	MULTI-MSMS	A375_MHC_IP_R1	1	539.220703125	2	538.82115	1075.62775	-0.68637	-0.00036983	-1.5335	-0.00082629	-2.2199	-0.0011961	538.8211071387525	87.648	0.50814	87.648	87.34	87.848	0					18	9	3	0	0	0	0.42311	1	32178	32178		32.786	1.5173	1	1926400			33557	1708	24456	24629	32667	32667					0.0929577317122039
LSIASKMFGVP	11	Unmodified	_LSIASKMFGVP_					0	0	0			REV__ENSG00000106258|ENST00000222982|CYP3A5	REV__ENSG00000106258|ENST00000222982|CYP3A5	MULTI-MSMS	A375_MHC_IP_R1	1	575.3713989257812	2	575.32046	1148.62637	-0.4029	-0.0002318	-2.0102	-0.0011565	-2.4131	-0.0013883	575.3210101410207	41.123	0.20166	41.123	41.013	41.215	0					5	3	2	0	0	0	0.69231	1	14188	14188		16.149	0	1	992570	+		33558	17435	24457	24630	32668	32668					0.05799815810837572
LSICLEENNRF	11	Unmodified	_LSICLEENNRF_					0	0	0		nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123170580-123298708:-|nuORF	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	446.15338134765625	3	446.555455	1336.64454	0.087702	3.9164E-05	-2.1904	-0.00097815	-2.1027	-0.00093899	446.55473944533327	51.599	0.35426	51.599	51.424	51.778	0					9	6	2	0	0	0	1.0011	1	18349	18349		0.45452	0.38125	1	749890			33559	4830	24458	24631	32669	32669					-0.010320940051542493
LSICMKKL	8	Unmodified	_LSICMKKL_					0	0	0		ENST00000438314.1_3_2:44587770-44588590:-|nuORF	ENST00000438314.1_3_2:44587770-44588590:-|nuORF	ENST00000438314.1_3_2:44587770-44588590:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	468.6741027832031	2	468.274467	934.53438	-0.71102	-0.00033295	0.077727	3.6397E-05	-0.63329	-0.00029655	468.2744428895465	32.993	0.30674	33.73	33.569	33.876	0.73692					9	5	2	0	0	0	0.75805	1	11805	11805		18.135	1.1927	1	3032700			33560	11948	24459	24632	32670	32670					0.06449434192802528
LSIFFIFHRP	10	Unmodified	_LSIFFIFHRP_					0	0	0			REV__ADGRG7|p.L568F|1|0.33|ENSG00000144820|chr3:100655157-100655157|C/T|missense_variant	REV__ADGRG7|p.L568F|1|0.33|ENSG00000144820|chr3:100655157-100655157|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	639.2614135742188	2	638.863683	1275.71281	-0.60625	-0.00038731	-2.4043	-0.0015361	-3.0106	-0.0019234	638.8617818578385	62.122	0.3578	62.122	61.891	62.249	0					9	6	2	0	0	0	0.93799	1	22463	22463		6.7232	0.51738	1	1694100	+		33561	15330	24460	24633	32671	32671					0.08598563427699446
LSIFGDHQDV	10	Unmodified	_LSIFGDHQDV_					0	0	0		tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1;tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1;tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	566.1768798828125	2	565.77747	1129.54039	-0.37408	-0.00021165	-1.1604	-0.0006565	-1.5344	-0.00086815	565.7770997691248	63.387	0.81225	64.128	63.785	64.597	0.74022					30	13	4	0	0	0	0.8528	1	24011	24011		7.609	0	1	5134500			33562	29629;30059	24461	24634	32672	32672					-0.019200527703333137
LSIGVERIF	9	Unmodified	_LSIGVERIF_					0	0	0		nc|ENSG00000170445|P12081-2|HARS1;ENSG00000170445|ENST00000504156|HARS1;nc|ENSG00000170445|P12081-3|HARS1;nc|ENSG00000170445|P12081-4|HARS1;ENST00000506579.5_1_5:140056223-140057407:-|nuORF;ENSG00000112855|ENST00000230771|HARS2;nc|ENSG00000112855|P49590-2|HARS2	nc|ENSG00000170445|P12081-2|HARS1;ENSG00000112855|ENST00000230771|HARS2	nc|ENSG00000170445|P12081-2|HARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	517.7052001953125	2	517.305667	1032.59678	-0.50323	-0.00026033	0.1635	8.458E-05	-0.33973	-0.00017575	517.3056996851851	100.61	0.35513	100.61	100.43	100.79	0					11	6	2	0	0	0	0.37663	1	37002	37002		36.506	5.2379	1	2128300			33563	7505;3115	24462	24635	32673	32673					0.08178619856971636
LSIIRLRIVFT	11	Unmodified	_LSIIRLRIVFT_					0	0	0			REV__ENST00000562413.2_1_6:147124559-147124826:-|nuORF	REV__ENST00000562413.2_1_6:147124559-147124826:-|nuORF	MSMS	A375_MHC_IP_R1	1	666.3963012695312	2	665.932097	1329.84964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.26	1	107.26	106.76	107.76	0								0	0	0	0.16337	1	39359	39359		1.1933	0.12188	1		+		33564	26189	24463	24636	32674	32674					0.19791052587379454
LSIKIRIGY	9	Unmodified	_LSIKIRIGY_					0	0	0		tr|U7SSI6|U7SSI6_FUSNUtRNA-dihydrouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01281PE=3SV=1	tr|U7SSI6|U7SSI6_FUSNUtRNA-dihydrouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01281PE=3SV=1	tr|U7SSI6|U7SSI6_FUSNUtRNA-dihydrouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01281PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	531.669677734375	2	531.837134	1061.65972	-1.1151	-0.00059306	-0.16995	-9.0388E-05	-1.2851	-0.00068345	531.8371868176314	52.44	0.55721	53.192	53.032	53.59	0.75225					17	10	2	0	0	0	0.75466	1	19863	19863		7.9102	7.2198	1	2038500			33565	29637	24464	24637	32675	32675					0.1313518564502374
LSIKRWTCI	9	Unmodified	_LSIKRWTCI_					0	0	0			REV__ENST00000476149.1_1_2:118582113-118584081:+|nuORF	REV__ENST00000476149.1_1_2:118582113-118584081:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	374.26837158203125	3	373.882955	1118.62703	-0.28267	-0.00010569	-1.5771	-0.00058966	-1.8598	-0.00069534	373.8819723302977	37.019	0.812	37.79	37.308	38.12	0.7709					31	15	4	0	0	0	0.60982	1	13588	13588		14.405	1.5328	1	10288000	+		33566	25179	24465	24638	32676	32676					0.07246655250514777
LSILAETASP	10	Unmodified	_LSILAETASP_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-3|VCAN	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-MSMS	A375_MHC_IP_R1	1	501.20599365234375	2	501.279315	1000.54408	-0.30747	-0.00015413	-2.5966	-0.0013016	-2.904	-0.0014557	501.2790619126908	54.622	0.35526	54.622	54.415	54.771	0					10	6	3	0	0	0	0.53946	1	19431	19431		25.399	0.72543	1	927950			33567	1154	24466	24639	32677	32677					0.04382617003523137
LSILILIVIKF	11	Unmodified	_LSILILIVIKF_					0	0	0			REV__tr|U7SPR8|U7SPR8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01875PE=4SV=1	REV__tr|U7SPR8|U7SPR8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01875PE=4SV=1	MSMS	A375_MHC_IP_R2	2	636.337158203125	2	636.438692	1270.86283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.53	1	118.16	117.66	118.66	0.62995								0	0	0	0.16297	1	44490	44490		3.2813	0	1		+		33568	28363	24467	24640	32678	32678					0.23823490646759637
LSILLKRKRF	10	Unmodified	_LSILLKRKRF_					0	0	0			REV__ENST00000391974.3_1_1:198190099-198190180:+|nuORF	REV__ENST00000391974.3_1_1:198190099-198190180:+|nuORF	MSMS	A375_MHC_IP_R1	1	425.28375244140625	3	425.28708	1272.83941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.909	1	64.909	64.409	65.409	0								0	0	0	0.15583	1	23494	23494		1.9064	1.1298	1		+		33569	24266	24468	24641	32679	32679					0.21390489652821998
LSILRNQV	8	Unmodified	_LSILRNQV_					0	0	0		tr|U7STY1|U7STY1_FUSNUCobyrinatea,c-diamidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiAPE=3SV=1	tr|U7STY1|U7STY1_FUSNUCobyrinatea,c-diamidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiAPE=3SV=1	tr|U7STY1|U7STY1_FUSNUCobyrinatea,c-diamidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	471.6684875488281	2	471.790184	941.565815	-0.51649	-0.00024367	-0.080301	-3.7885E-05	-0.59679	-0.00028156	471.7902503836808	83.75	2.1429	84.489	84.099	86.242	0.73962					82	41	4	0	0	0	0.86765	1	32085	32085		24.674	13.034	1	40262000			33570	29725	24469	24642	32680	32680					0.0926946654275298
LSIPQGKQ	8	Unmodified	_LSIPQGKQ_					0	0	0			REV__nc|ENSG00000050628|P43115-2|PTGER3	REV__nc|ENSG00000050628|P43115-2|PTGER3	MULTI-SECPEP	A375_MHC_IP_R1	1	435.28253173828125	2	435.75581	869.497067	-0.14098	-6.1434E-05	-0.78199	-0.00034076	-0.92297	-0.00040219	435.7560219264786	59.966	0.30601	59.966	59.803	60.109	0					9	5	2	0	0	0	0.8957	1	21622	21622		28.487	1.6032	1	456790	+		33571	27103	24470	24643	32681	32681					0.05709802243052309
LSIRESRLFG	10	Unmodified	_LSIRESRLFG_					0	0	0		nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000064726|ENST00000261721|BTBD1	nc|ENSG00000064726|Q9H0C5-2|BTBD1	nc|ENSG00000064726|Q9H0C5-2|BTBD1	MULTI-MSMS	A375_MHC_IP_R2	2	393.2524108886719	3	393.227779	1176.66151	-0.67178	-0.00026416	1.3322	0.00052387	0.66046	0.00025971	393.22793414260343	37.353	0.25428	38.124	37.917	38.171	0.7709					6	4	2	0	0	0	0.70442	1	13647	13647		10.315	0.77126	1	669420			33572	1358	24471	24644	32682	32682					0.0802419466297124
LSIRQKVAV	9	Unmodified	_LSIRQKVAV_					0	0	0		ENST00000482195.5_1_6:31499071-31508296:-|nuORF	ENST00000482195.5_1_6:31499071-31508296:-|nuORF	ENST00000482195.5_1_6:31499071-31508296:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.15643310546875	2	507.326934	1012.63931	-0.27792	-0.000141	-0.17348	-8.8011E-05	-0.4514	-0.00022901	507.32673151456487	42.411	0.50551	42.411	42.132	42.638	0					15	9	2	0	0	0	0.67483	1	14666	14666		6.2058	0.9089	1	5013600			33573	12521	24472	24645	32683	32683					0.13350014985235248
LSIRSCKCS	9	Unmodified	_LSIRSCKCS_					0	0	0		nc|ENSG00000020181|Q96PE1-3|ADGRA2;nc|ENSG00000020181|Q96PE1-2|ADGRA2;ENSG00000020181|ENST00000412232|ADGRA2	nc|ENSG00000020181|Q96PE1-3|ADGRA2	nc|ENSG00000020181|Q96PE1-3|ADGRA2	MULTI-SECPEP	A375_MHC_IP_R2	2	499.1517333984375	2	498.751887	995.489221	-0.54425	-0.00027144	0.73538	0.00036677	0.19114	9.533E-05	498.75210223019974	67.284	0.4048	68.021	67.801	68.205	0.73631					13	7	2	0	0	0	0.35487	1	25501	25501		36.127	36.127	1	1852800			33574	1057	24473	24646	32684	32684					-0.008704163403876919
LSISLHVTL	9	Unmodified	_LSISLHVTL_					0	0	0		chr3:44862527-44864197|394|10.84|0.0|20.05|+|0|None,TMEM42|1	chr3:44862527-44864197|394|10.84|0.0|20.05|+|0|None,TMEM42|1	chr3:44862527-44864197|394|10.84|0.0|20.05|+|0|None,TMEM42|1	MULTI-SECPEP	A375_MHC_IP_R2	2	491.150390625	2	491.800217	981.585882	-0.37045	-0.00018219	-0.35081	-0.00017253	-0.72126	-0.00035471	491.80005049057564	85.347	0.55985	86.083	85.831	86.391	0.73602					15	10	2	0	0	0	0.71541	1	32382	32382		1.6526	0	1	1789500			33575	473	24474	24647	32685	32685					0.09435217482723601
LSITRAVRF	9	Unmodified	_LSITRAVRF_					0	0	0		VARS|p.S1120F|1|0.28|ENSG00000204394|chr6:31779466-31779466|G/A|missense_variant	VARS|p.S1120F|1|0.28|ENSG00000204394|chr6:31779466-31779466|G/A|missense_variant	VARS|p.S1120F|1|0.28|ENSG00000204394|chr6:31779466-31779466|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	532.2239379882812	2	531.824558	1061.63456	-0.64228	-0.00034158	0.0045901	2.4411E-06	-0.63769	-0.00033914	531.8245349111661	47.34	0.35965	47.34	47.107	47.467	0					11	6	2	0	0	0	0.49205	1	16638	16638		21.537	0	1	4433300			33576	30135	24475	24648	32686	32686					0.10621130842446291
LSIWEASEW	9	Unmodified	_LSIWEASEW_					0	0	0		ENSG00000140470|ENST00000268070|ADAMTS17	ENSG00000140470|ENST00000268070|ADAMTS17	ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-SECPEP	A375_MHC_IP_R1	1	560.2144775390625	2	560.769114	1119.52368	0.047648	2.672E-05	4.2429	0.0023793	4.2906	0.002406	560.7728220707698	49.159	0.15099	49.159	49.084	49.235	0					4	2	2	0	0	0	0.71541	1	17365	17365		16.942	1.0951	1	461360			33577	5157	24476	24649	32687	32687					-0.03130553656296797
LSIYSAHLCL	10	Unmodified	_LSIYSAHLCL_					0	0	0			REV__ENST00000369774.8_3_10:105353809-105353989:-|nuORF	REV__ENST00000369774.8_3_10:105353809-105353989:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	560.1952514648438	2	560.296985	1118.57942	-0.48883	-0.00027389	0.49214	0.00027575	0.003315	1.8574E-06	560.2972822581062	74.236	0.76105	74.236	73.792	74.553	0					19	14	2	0	0	0	0.76414	1	27036	27036		14.838	14.838	1	1699600	+		33578	24017	24477	24650	32688	32688					0.024869562596677497
LSKDDVMNKRK	11	Unmodified	_LSKDDVMNKRK_					0	0	0			REV__tr|U7STU6|U7STU6_FUSNUMalonatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01193PE=3SV=1	REV__tr|U7STU6|U7STU6_FUSNUMalonatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01193PE=3SV=1	MSMS	A375_MHC_IP_R2	2	667.3388061523438	2	667.366461	1332.71837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.28	1	124.61	124.11	125.11	0.32969								0	0	0	0.15183	1	48006	48006		19.362	2.249	1		+		33579	28507	24478	24651	32689	32689					0.06531874157167294
LSKDEELFLT	10	Unmodified	_LSKDEELFLT_					0	0	0			REV__ENSG00000011426|ENST00000265748|ANLN	REV__ENSG00000011426|ENST00000265748|ANLN	MULTI-SECPEP	A375_MHC_IP_R2	2	399.2799987792969	3	398.879933	1193.61797	-0.0048581	-1.9378E-06	-0.66811	-0.00026649	-0.67296	-0.00026843	398.88029196679446	42.485	0.66021	43.257	43.014	43.674	0.7724					18	12	2	0	0	0	0.92199	1	15818	15818		14.957	2.7824	1	1990900	+		33580	16209	24479	24652	32690	32690					0.028905403751650738
LSKDSIRTL	9	Unmodified	_LSKDSIRTL_					0	0	0		ENSG00000177853|ENST00000316045|ZNF518A;nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	ENSG00000177853|ENST00000316045|ZNF518A	ENSG00000177853|ENST00000316045|ZNF518A	MULTI-SECPEP	A375_MHC_IP_R1	1	517.2057495117188	2	516.806031	1031.59751	-0.52656	-0.00027213	-0.036031	-1.8621E-05	-0.56259	-0.00029075	516.8059709528026	39.411	0.35458	39.411	39.238	39.592	0					12	6	3	0	0	0	0.61758	1	13461	13461		16.566	16.566	1	4257400			33581	8113	24480	24653	32691	32691					0.08297414506046152
LSKEGPVLKY	10	Unmodified	_LSKEGPVLKY_					0	0	0		nc|ENSG00000206199|A6NFN9-1|ANKUB1;nc|ENSG00000206199|A6NFN9|ANKUB1;ENSG00000206199|ENST00000446160|ANKUB1	nc|ENSG00000206199|A6NFN9-1|ANKUB1	nc|ENSG00000206199|A6NFN9-1|ANKUB1	MULTI-SECPEP	A375_MHC_IP_R2	2	378.2767028808594	3	378.557013	1132.64921	-0.16808	-6.3626E-05	2.3751	0.00089912	2.207	0.00083549	378.5579803344704	24.226	0.25396	24.87	24.755	25.009	0.64368					7	4	2	0	0	0	0.91556	1	7952	7952		5.7834	0.38072	1	1007200			33582	9538	24481	24654	32692	32692					0.0881915819995811
LSKEQKQRL	9	Unmodified	_LSKEQKQRL_					0	0	0		ENST00000562938.5_1_15:78207528-78213944:-|nuORF;ENSG00000215186|ENST00000421285|GOLGA6B;ENSG00000167195|ENST00000300576|GOLGA6C;ENSG00000159289|ENST00000290438|GOLGA6A;ENSG00000140478|ENST00000434739|GOLGA6D	ENST00000562938.5_1_15:78207528-78213944:-|nuORF	ENST00000562938.5_1_15:78207528-78213944:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	377.6206970214844	3	377.227779	1128.66151	-0.14891	-5.6174E-05	-0.51162	-0.000193	-0.66054	-0.00024917	377.2277447482487	21.194	0.91277	21.813	21.219	22.132	0.61932					29	17	3	0	0	0	0.54799	1	6442	6442		17.443	0.87677	1	2037500			33583	5159	24482	24655	32693	32693					0.10232194662989968
LSKFFFGIY	9	Unmodified	_LSKFFFGIY_					0	0	0		L1M3_dup291|chr1:173794566-173795729:+|1.1839404940679334|0.3648644439828962|1.7|470.0|74|2|anti-sense	L1M3_dup291|chr1:173794566-173795729:+|1.1839404940679334|0.3648644439828962|1.7|470.0|74|2|anti-sense	L1M3_dup291|chr1:173794566-173795729:+|1.1839404940679334|0.3648644439828962|1.7|470.0|74|2|anti-sense	MULTI-SECPEP	A375_MHC_IP_R2	2	561.2033081054688	2	561.305136	1120.59572	-0.67438	-0.00037853	-0.79263	-0.00044491	-1.467	-0.00082344	561.3050056713498	74.72	0.40685	75.457	75.264	75.671	0.73752					9	7	2	0	0	0	0.65246	1	28388	28388		15.847	1.0089	1	911020			33584	14251	24483	24656	32694	32694					0.04024405488098637
LSKGKTPA	8	Unmodified	_LSKGKTPA_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-SECPEP	A375_MHC_IP_R2	2	401.136962890625	2	401.245078	800.475603	0.061104	2.4518E-05	-1.7814	-0.00071479	-1.7203	-0.00069028	401.2436881958237	92.608	1.2636	93.347	92.483	93.746	0.73902					43	24	3	0	0	0	0.972	1	34924	34924		4.756	0	1	1094900			33585	2532	24484	24657	32695	32695					0.06738417214307901
LSKHRKKPV	9	Unmodified	_LSKHRKKPV_					0	0	0			REV__ENST00000509041.5_1_4:71841034-71841175:+|nuORF	REV__ENST00000509041.5_1_4:71841034-71841175:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	364.945068359375	3	364.904859	1091.69275	0.21188	7.7317E-05	0.16971	6.1928E-05	0.38159	0.00013925	364.90490195299236	47.131	0.66212	47.893	47.563	48.225	0.76128					30	12	3	0	0	0	0.65748	1	17762	17762		10.8	1.2555	1	11444000	+		33586	25589	24485	24658	32696	32696					0.15056812487728166
LSKIMTVE	8	Oxidation (M)	_LSKIM(Oxidation (M))TVE_		LSKIM(1)TVE		LSKIM(46)TVE	0	0	1		ENST00000356362.6_1_7:105148838-105148922:-|nuORF	ENST00000356362.6_1_7:105148838-105148922:-|nuORF	ENST00000356362.6_1_7:105148838-105148922:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	469.15679931640625	2	468.757161	935.499769	-0.55069	-0.00025814	-0.11106	-5.2059E-05	-0.66174	-0.0003102	468.75708055674124	42.692	0.764	43.465	42.809	43.573	0.7724					17	14	2	0	0	0	0.57209	1	15895	15895		46.021	46.021	1	1661600			33587	10964	24486	24659	32697	32697		449			0.029438895856969793
LSKIQRDLY	9	Unmodified	_LSKIQRDLY_					0	0	0		ENSG00000164080|ENST00000684192|RAD54L2;ENST00000487093.5_1_3:51669772-51697433:+|nuORF	ENSG00000164080|ENST00000684192|RAD54L2	ENSG00000164080|ENST00000684192|RAD54L2	MULTI-SECPEP	A375_MHC_IP_R1	1	379.4478759765625	3	379.220513	1134.63971	0.013738	5.2097E-06	0.13179	4.9978E-05	0.14553	5.5188E-05	379.2204881353523	26.414	0.5072	26.414	26.271	26.779	0					14	9	2	0	0	0	0.75519	1	7920	7920		6.6304	0	1	2838800			33588	6773	24487	24660	32698	32698					0.07777389914417654
LSKKGCGG	8	Unmodified	_LSKKGCGG_					0	0	0			REV__TNRC18|p.P612L|1|0.62|ENSG00000182095|chr7:5387989-5387989|G/A|missense_variant	REV__TNRC18|p.P612L|1|0.62|ENSG00000182095|chr7:5387989-5387989|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	375.6027526855469	2	375.202356	748.390159	0.085235	3.198E-05	0.95279	0.00035749	1.038	0.00038947	375.20261910048936	71.292	0.45735	72.026	71.806	72.264	0.7342					13	8	2	0	0	0	0.972	1	27081	27081		7.9102	2.6795	1	1505500	+		33589	28148	24488	24661	32699	32699					0.005899287570287015
LSKKKRLKKK	10	Unmodified	_LSKKKRLKKK_					0	0	0			REV__nc|ENSG00000103994|Q9H2Y7-2|ZNF106	REV__nc|ENSG00000103994|Q9H2Y7-2|ZNF106	MSMS	A375_MHC_IP_R2	2	628.97119140625	2	628.948082	1255.88161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.58	1	109.33	108.83	109.83	0.74684								0	0	0	0.15629	1	40996	40996		0.40072	0	1		+		33590	17295	24489	24662	32700	32700					0.26390465061217583
LSKKLMEMPV	10	Unmodified	_LSKKLMEMPV_					0	0	0		nc|ENSG00000116198|O60308-3|CEP104;ENST00000494653.5_1_1:3750422-3768971:-|nuORF;ENSG00000116198|ENST00000378230|CEP104	nc|ENSG00000116198|O60308-3|CEP104	nc|ENSG00000116198|O60308-3|CEP104	MULTI-MSMS	A375_MHC_IP_R1	1	392.6280517578125	3	392.555739	1174.64539	-0.016409	-6.4413E-06	3.1297	0.0012286	3.1133	0.0012221	392.5571261535332	52.767	0.71177	52.767	52.387	53.099	0					24	13	2	0	0	0	0.55789	1	18795	18795		15.739	8.2616	1	1796500			33591	3382	24490	24663	32701	32701					0.06505029110235228
LSKKLVVRW	9	Unmodified	_LSKKLVVRW_					0	0	0		ENSG00000119446|ENST00000417201|RBM18	ENSG00000119446|ENST00000417201|RBM18	ENSG00000119446|ENST00000417201|RBM18	MULTI-SECPEP	A375_MHC_IP_R2	2	377.6412658691406	3	376.913243	1127.7179	-0.012746	-4.8041E-06	1.5087	0.00056867	1.496	0.00056386	376.91371009585686	37.879	0.56474	38.654	38.483	39.047	0.77451					15	10	2	0	0	0	0.76642	1	13844	13844		12.873	10.374	1	2679400			33592	3595	24491	24664	32702	32702					0.15914867290302936
LSKKMKWPLEQ	11	Unmodified	_LSKKMKWPLEQ_					0	0	0			REV__ENST00000290846.8_1_22:46739262-46746193:+|nuORF	REV__ENST00000290846.8_1_22:46739262-46746193:+|nuORF	MSMS	A375_MHC_IP_R1	1	694.5153198242188	2	694.391948	1386.76934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.214	1	81.214	80.714	81.714	0								0	0	0	0.16258	1	29676	29676		5.2969	0	1		+		33593	23358	24492	24665	32703	32703					0.09142823202068939
LSKKPDIPTF	10	Unmodified	_LSKKPDIPTF_					0	0	0		ENSG00000122254|ENST00000261374|HS3ST2	ENSG00000122254|ENST00000261374|HS3ST2	ENSG00000122254|ENST00000261374|HS3ST2	MULTI-MSMS	A375_MHC_IP_R1	1	382.9327392578125	3	382.557013	1144.64921	0.28898	0.00011055	-1.5571	-0.00059569	-1.2681	-0.00048514	382.5574155026821	50.466	0.55974	50.466	50.204	50.764	0					18	10	2	0	0	0	0.70174	1	17814	17814		11.518	0.61892	1	2499100			33594	3770	24493	24666	32704	32704					0.08267158199919322
LSKKTLLRF	9	Unmodified	_LSKKTLLRF_					0	0	0		ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	MULTI-MSMS	A375_MHC_IP_R1	1	369.6413269042969	3	369.241248	1104.70191	-0.043329	-1.5999E-05	0.40957	0.00015123	0.36624	0.00013523	369.2413531478574	38.146	0.50898	38.146	37.862	38.371	0					21	9	3	0	0	0	0.053667	2	12895	12895;12948		62.869	20.033	1	8118000			33595	3851	24494	24667	32705;32706	32705					0.15375161053407282
LSKKVDVP	8	Unmodified	_LSKKVDVP_					0	0	0		CFAP221|p.N279D|1|0.16|ENSG00000163075|chr2:119604715-119604715|A/G|missense_variant	CFAP221|p.N279D|1|0.16|ENSG00000163075|chr2:119604715-119604715|A/G|missense_variant	CFAP221|p.N279D|1|0.16|ENSG00000163075|chr2:119604715-119604715|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	442.99188232421875	2	443.273835	884.533118	-0.30574	-0.00013553	0.13112	5.8124E-05	-0.17462	-7.7405E-05	443.273792874985	73.37	0.76546	74.106	73.785	74.551	0.7354					32	14	3	0	0	0	0.95423	1	27960	27960		18.135	2.2878	1	5705900			33596	366	24495	24668	32707	32707					0.08623259419891838
LSKLAFLVS	9	Unmodified	_LSKLAFLVS_					0	0	0		nc|ENSG00000154556|O94875-7|SORBS2;nc|ENSG00000154556|O94875|SORBS2;nc|ENSG00000154556|O94875-11|SORBS2;ENSG00000154556|ENST00000695409|SORBS2	nc|ENSG00000154556|O94875-7|SORBS2	nc|ENSG00000154556|O94875-7|SORBS2	MULTI-SECPEP	A375_MHC_IP_R1	1	489.6863098144531	2	489.305136	976.595718	-0.29603	-0.00014485	0.11197	5.479E-05	-0.18406	-9.0059E-05	489.30527515224287	73.422	0.20222	73.422	73.285	73.488	0					5	3	2	0	0	0	0.75164	1	26701	26701		5.7319	1.4026	1	352120			33597	6096	24496	24669	32708	32708					0.1064840548808661
LSKLEKKIW	9	Unmodified	_LSKLEKKIW_					0	0	0			REV__ENSG00000108055|ENST00000361804|SMC3	REV__ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	A375_MHC_IP_R1	1	382.6254577636719	3	382.241137	1143.70158	0.25748	9.8418E-05	-0.13462	-5.1457E-05	0.12286	4.6961E-05	382.5755047246011	46.493	0.2011	46.493	46.395	46.596	0					5	3	2	0	0	0	0.60982	1	16331	16331		14.405	2.2306	1	559830	+		33598	17511	24497	24670	32709	32709					0.13547741333559316
LSKLELSRL	9	Unmodified	_LSKLELSRL_					0	0	0		ENST00000488673.6_1_9:37763841-37777701:+|nuORF	ENST00000488673.6_1_9:37763841-37777701:+|nuORF	ENST00000488673.6_1_9:37763841-37777701:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	529.681640625	2	529.832049	1057.64954	-0.57498	-0.00030464	0.052838	2.7995E-05	-0.52214	-0.00027665	529.8320309304954	57.835	0.35522	57.835	57.669	58.024	0					11	6	2	0	0	0	0.67539	1	20750	20750		11.495	0	1	1176100			33599	12620	24498	24671	32710	32710					0.12302577919808755
LSKLKLSAIFF	11	Unmodified	_LSKLKLSAIFF_					0	0	0			REV__ENSG00000172967|ENST00000684488|XKR3	REV__ENSG00000172967|ENST00000684488|XKR3	MSMS	A375_MHC_IP_R2	2	633.6378784179688	2	633.894649	1265.77475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.05	1	119.62	119.12	120.12	0.57376								0	0	0	0.1624	1	45297	45297		6.2058	0.47393	1		+		33600	21185	24499	24672	32711	32711					0.1524887005614346
LSKLNANNK	9	Unmodified	_LSKLNANNK_					0	0	0			REV__nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	REV__nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	MULTI-MSMS	A375_MHC_IP_R2	2	501.1985778808594	2	501.290548	1000.56654	-0.5611	-0.00028128	-0.62729	-0.00031445	-1.1884	-0.00059573	501.29011625691896	132.19	0.91315	132.38	131.7	132.61	0.18953					21	17	2	0	0	0	0.61998	1	51806	51806		13.906	0.39817	1	1695200	+		33601	18066	24500	24673	32712	32712					0.06628261191792717
LSKLQQGIK	9	Unmodified	_LSKLQQGIK_					0	0	0		nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3;DIS3|p.P233L|1|0.39|ENSG00000083520|chr13:72776049-72776049|G/A|missense_variant	nc|ENSG00000083520|Q9Y2L1-2|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	MULTI-MSMS	A375_MHC_IP_R2	2	508.2184753417969	2	507.818941	1013.62333	-1.0512	-0.00053383	0.04227	2.1465E-05	-1.009	-0.00051236	507.8190477089845	24.391	0.20319	25.035	24.907	25.11	0.64368					5	3	2	0	0	0	0.59266	1	8039	8039		15.248	3.0078	1	7294200			33602	1779	24501	24674	32713	32713					0.11706308748318861
LSKMDKAFKK	10	Unmodified	_LSKMDKAFKK_					0	0	0			REV__DNAH17|p.R1321K|1|0.31|ENSG00000187775|chr17:78514925-78514925|C/T|missense_variant	REV__DNAH17|p.R1321K|1|0.31|ENSG00000187775|chr17:78514925-78514925|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	399.2799987792969	3	399.233765	1194.67946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.519	1	43.291	42.791	43.791	0.7724								0	0	0	0.15246	1	15818	15818		12.856	2.5407	1		+		33603	16007	24502	24675	32714	32714					0.08991193593465141
LSKMIIHLSW	10	Unmodified	_LSKMIIHLSW_					0	0	0			REV__ENST00000370035.7_1_1:109177820-109178099:+|nuORF	REV__ENST00000370035.7_1_1:109177820-109178099:+|nuORF	MSMS	A375_MHC_IP_R1	1	614.4932861328125	2	614.349551	1226.68455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.387	1	84.387	83.887	84.887	0								0	0	0	0.15435	1	30907	30907		6.7232	0.99131	1		+		33604	24026	24503	24676	32715	32715					0.08027497456123456
LSKNLEQVF	9	Unmodified	_LSKNLEQVF_					0	0	0			REV__nc|ENSG00000147130|Q14202-2|ZMYM3	REV__nc|ENSG00000147130|Q14202-2|ZMYM3	MULTI-SECPEP	A375_MHC_IP_R1	1	539.7000122070312	2	539.300581	1076.58661	-0.72566	-0.00039135	0.10692	5.7661E-05	-0.61874	-0.00033368	539.3005211415611	94.166	0.55473	94.166	93.84	94.394	0					19	10	3	0	0	0	0.67483	1	34602	34602		20.454	0	1	2305100	+		33605	19571	24504	24677	32716	32716					0.05138012131760661
LSKNLNNSQS	10	Unmodified	_LSKNLNNSQS_					0	0	0		ENSG00000161638|ENST00000293379|ITGA5;ENST00000552564.5_1_12:54794620-54797174:-|nuORF	ENSG00000161638|ENST00000293379|ITGA5	ENSG00000161638|ENST00000293379|ITGA5	MULTI-SECPEP	A375_MHC_IP_R1	1	369.25897216796875	3	368.859643	1103.5571	0.21218	7.8264E-05	-2.7818	-0.0010261	-2.5696	-0.00094783	368.85880179292974	24.691	0.50548	24.691	24.547	25.053	0					13	9	2	0	0	0	0.88918	1	7095	7095		11.518	2.5416	1	3282400			33606	6481	24505	24678	32717	32717					0.009464481156101101
LSKNSEVGFT	10	Unmodified	_LSKNSEVGFT_					0	0	0			REV__L1M3_dup291|chr1:173794566-173795729:+|1.1839404940679334|0.3648644439828962|1.7|470.0|62|2|anti-sense	REV__L1M3_dup291|chr1:173794566-173795729:+|1.1839404940679334|0.3648644439828962|1.7|470.0|62|2|anti-sense	MULTI-SECPEP	A375_MHC_IP_R2	2	541.6375122070312	2	541.279846	1080.54514	-1.2462	-0.00067457	0.39146	0.00021189	-0.85478	-0.00046267	541.2801436248999	52.357	0.40279	53.109	52.882	53.285	0.75225					11	7	2	0	0	0	0.63381	1	19765	19765		24.991	8.0487	1	1758500	+		33607	26880	24506	24679	32718	32718					0.008088313724329055
LSKPADWNL	9	Unmodified	_LSKPADWNL_					0	0	0		ENST00000569860.1_1_2:12856079-12856172:+|nuORF	ENST00000569860.1_1_2:12856079-12856172:+|nuORF	ENST00000569860.1_1_2:12856079-12856172:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	522.169189453125	2	522.279649	1042.54475	-0.5423	-0.00028323	-0.54941	-0.00028695	-1.0917	-0.00057018	522.2793692887293	76.091	0.65663	76.091	75.815	76.471	0					19	12	2	0	0	0	0.083712	1	27790	27790		47.749	14.963	1	3139000			33608	13596	24507	24680	32719	32719					0.025174564432063562
LSKPADWNL	9	Unmodified	_LSKPADWNL_					0	0	0		ENST00000569860.1_1_2:12856079-12856172:+|nuORF	ENST00000569860.1_1_2:12856079-12856172:+|nuORF	ENST00000569860.1_1_2:12856079-12856172:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	522.6371459960938	2	522.279649	1042.54475	-0.61495	-0.00032118	0.4229	0.00022087	-0.19205	-0.00010031	522.2797322119138	75.304	0.61011	76.044	75.724	76.334	0.74007					20	11	3	0	0	0	0.39388	1	28630	28630		9.3831	0	1	3136200			33609	13596	24507	24680	32720	32720					0.025174564432063562
LSKPCREEVC	10	Unmodified	_LSKPCREEVC_					0	0	0		ENST00000437657.5_2_7:97499100-97501078:-|nuORF	ENST00000437657.5_2_7:97499100-97501078:-|nuORF	ENST00000437657.5_2_7:97499100-97501078:-|nuORF	MSMS	A375_MHC_IP_R1	1	582.2261962890625	2	582.281008	1162.54746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.221	1	53.221	52.721	53.721	0								0	0	0	0.1524	1	18964	18964		13.042	2.2185	1				33610	11943	24508	24681	32721	32721					-0.027307794857733825
LSKPLLLFTPQ	11	Unmodified	_LSKPLLLFTPQ_					0	0	0			REV__ENST00000535977.5_1_16:677627-678308:+|nuORF	REV__ENST00000535977.5_1_16:677627-678308:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	628.7822265625	2	628.884281	1255.75401	-0.8786	-0.00055254	0.26804	0.00016857	-0.61056	-0.00038397	628.8850796767566	127.97	0.40521	128.23	128.02	128.42	0.26594					10	7	2	0	0	0	0.99676	1	50245	50245		2.9952	1.8019	1	2867000	+		33611	25910	24509	24682	32722	32722					0.1363627967652974
LSKPNPPSL	9	Unmodified	_LSKPNPPSL_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-SECPEP	A375_MHC_IP_R1	1	477.1763000488281	2	476.776742	951.538931	-0.79898	-0.00038093	0.33889	0.00016157	-0.46009	-0.00021936	476.7768684566882	41.652	1.0185	41.652	41.164	42.183	0					33	19	2	0	0	0	0.031881	1	14344	14344		88.364	20.283	1	3272000			33612	2388	24510	24683	32723	32723					0.06122357931565148
LSKPNPPSL	9	Unmodified	_LSKPNPPSL_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-SECPEP	A375_MHC_IP_R2	2	477.1767883300781	2	476.776742	951.538931	-0.74877	-0.000357	0.36146	0.00017234	-0.38731	-0.00018466	476.77697854255194	40.911	0.9657	41.685	41.183	42.149	0.77451					37	18	3	0	0	0	0.09145	1	15130	15130		78.06	19.382	1	2963300			33613	2388	24510	24683	32724	32724					0.06122357931565148
LSKPPAPH	8	Unmodified	_LSKPPAPH_					0	0	0		ENST00000374024.3_1_1:27721341-27721638:+|nuORF	ENST00000374024.3_1_1:27721341-27721638:+|nuORF	ENST00000374024.3_1_1:27721341-27721638:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	423.6032409667969	2	423.745245	845.475937	-0.59377	-0.00025161	-0.21244	-9.0019E-05	-0.80621	-0.00034163	423.7452361168536	56.865	0.30417	57.615	57.408	57.712	0.75015					9	5	2	0	0	0	0.94479	1	21523	21523		8.5933	0	1	656720			33614	11247	24511	24684	32725	32725					0.047018369341685684
LSKPRESAYI	10	Unmodified	_LSKPRESAYI_					0	0	0			REV__ENSG00000197380|ENST00000391916|DACT3	REV__ENSG00000197380|ENST00000391916|DACT3	MSMS	A375_MHC_IP_R1	1	582.6671752929688	2	582.324588	1162.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.46	1	132.46	131.96	132.96	0								0	0	0	0.15435	1	51074	51074		6.7232	2.7788	1		+		33615	22282	24512	24685	32726	32726					0.059810860518155096
LSKPVGWG	8	Unmodified	_LSKPVGWG_					0	0	0			REV__ENST00000343638.9_1_17:42283916-42284555:-|nuORF	REV__ENST00000343638.9_1_17:42283916-42284555:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	422.1708984375	2	422.239796	842.465038	-0.010776	-4.5499E-06	0.16224	6.8506E-05	0.15147	6.3956E-05	422.238354280808	74.605	0.15159	74.605	74.502	74.653	0					4	2	2	0	0	0	0.7754	1	27192	27192		11.64	1.4569	1	283070	+		33616	23752	24513	24686	32727	32727					0.03750434559901805
LSKRKFFHLWR	11	Unmodified	_LSKRKFFHLWR_					0	0	0		ENST00000370008.3_1_1:109351697-109351763:+|nuORF	ENST00000370008.3_1_1:109351697-109351763:+|nuORF	ENST00000370008.3_1_1:109351697-109351763:+|nuORF	MSMS	A375_MHC_IP_R1	1	506.6369934082031	3	506.63325	1516.87792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.041	1	88.041	87.541	88.541	0								0	0	0	0.16334	1	32314	32314		1.3296	0.87513	1				33617	11146	24514	24687	32728	32728					0.14015795287355104
LSKRNPRQINW	11	Unmodified	_LSKRNPRQINW_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	A375_MHC_IP_R2	2	471.6679382324219	3	471.268748	1410.78442	-0.87812	-0.00041383	-0.20327	-9.5793E-05	-1.0814	-0.00050962	471.2684434887961	24.288	0.20318	24.932	24.806	25.009	0.64368					5	3	2	0	0	0	0.72964	1	7989	7989		9.2438	4.8376	1	5549400			33618	3217	24515	24688	32729	32729					0.09545451114286152
LSKRRTERRMR	11	Unmodified	_LSKRRTERRMR_					0	0	0		ENST00000593605.1_3_19:40561332-40561410:-|nuORF	ENST00000593605.1_3_19:40561332-40561410:-|nuORF	ENST00000593605.1_3_19:40561332-40561410:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	373.6409606933594	4	372.971759	1487.85793	0.0063833	2.3808E-06	-0.49688	-0.00018532	-0.4905	-0.00018294	372.9716079706816	26.399	0.86099	26.399	26.017	26.878	0					60	16	6	0	0	0	1.0005	1	7831	7831		2.4348	2.4348	1	160250000			33619	13828	24516	24689	32730	32730					0.1335167628506042
LSKRRTERRMR	11	Unmodified	_LSKRRTERRMR_					0	0	0		ENST00000593605.1_3_19:40561332-40561410:-|nuORF	ENST00000593605.1_3_19:40561332-40561410:-|nuORF	ENST00000593605.1_3_19:40561332-40561410:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	497.6933288574219	3	496.95992	1487.85793	-0.94123	-0.00046775	-0.36784	-0.0001828	-1.3091	-0.00065055	496.9597609872993	25.723	0.66033	26.383	25.992	26.653	0.65992					43	12	5	0	0	0	0.99945	1	8564	8564		2.2527	1.143	1	27142000			33620	13828	24516	24689	32731	32731					0.1335167628506042
LSKTCMEGIN	10	Unmodified	_LSKTCMEGIN_					0	0	0			REV__ENSG00000177483|ENST00000316997|RBM44	REV__ENSG00000177483|ENST00000316997|RBM44	MSMS	A375_MHC_IP_R1	1	548.1787719726562	2	548.262284	1094.51002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.11	1	114.11	113.61	114.61	0								0	0	0	0.12273	1	41833	41833		38.176	0	1		+		33621	21461	24517	24690	32732	32732					-0.03345870751354596
LSKTEFLSF	9	Unmodified	_LSKTEFLSF_					0	0	0		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-SECPEP	A375_MHC_IP_R1	1	536.9887084960938	2	536.289682	1070.56481	-0.75342	-0.00040405	0.27431	0.00014711	-0.47911	-0.00025694	536.2896667699322	87.517	0.66131	87.517	87.237	87.898	0					26	12	3	0	0	0	0.31976	1	32165	32165		55.503	11.644	1	8056300			33622	6637	24518	24691	32733	32733					0.03235207383158922
LSKTEFLSF	9	Unmodified	_LSKTEFLSF_					0	0	0		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-SECPEP	A375_MHC_IP_R2	2	536.6364135742188	2	536.289682	1070.56481	-0.7299	-0.00039144	0.36475	0.00019561	-0.36515	-0.00019583	536.2898511455821	86.693	0.71347	87.426	87.049	87.762	0.733					25	13	3	0	0	0	0.091861	1	32922	32922		86.332	18.251	1	6302500			33623	6637	24518	24691	32734	32734					0.03235207383158922
LSKTSVKKY	9	Unmodified	_LSKTSVKKY_					0	0	0		tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	MSMS	A375_MHC_IP_R1	1	351.9089660644531	3	351.881608	1052.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.161	1	33.161	32.661	33.661	0								0	0	0	0.15486	1	10795	10795		11.495	3.5493	1				33624	30043	24519	24692	32735	32735					0.09878889028482263
LSKVNKEII	9	Unmodified	_LSKVNKEII_					0	0	0		tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	522.6422119140625	2	522.326599	1042.63865	-0.47268	-0.00024689	-0.077418	-4.0437E-05	-0.5501	-0.00028733	522.3261591277253	43.71	0.20412	43.71	43.553	43.757	0					5	3	2	0	0	0	0.77396	1	15152	15152		6.2058	0	1	629850			33625	29746	24520	24693	32736	32736					0.11903175545512568
LSKWCTGLVP	10	Unmodified	_LSKWCTGLVP_					0	0	0		ENST00000467738.1_1_3:58512417-58512465:-|nuORF	ENST00000467738.1_1_3:58512417-58512465:-|nuORF	ENST00000467738.1_1_3:58512417-58512465:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	368.9354553222656	3	368.535444	1102.5845	0.31127	0.00011472	-0.35367	-0.00013034	-0.042399	-1.5625E-05	368.5353359261661	63.606	0.66428	63.606	63.326	63.99	0					24	12	3	0	0	0	0.93961	1	22976	22976		0.56317	0	1	4491200			33626	12286	24521	24694	32737	32737					0.03731260122276581
LSLAHCDW	8	Unmodified	_LSLAHCDW_					0	0	0		ENSG00000107872|ENST00000369956|FBXL15	ENSG00000107872|ENST00000369956|FBXL15	ENSG00000107872|ENST00000369956|FBXL15	MSMS	A375_MHC_IP_R2	2	472.6902770996094	2	472.71837	943.422187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.173	1	83.913	83.413	84.413	0.73962								0	0	0	0.16876	1	31611	31611		19.439	4.8573	1				33627	2766	24522	24695	32738	32738					-0.05178703559852238
LSLAIRKRRRR	11	Unmodified	_LSLAIRKRRRR_					0	0	0			REV__ENST00000544313.5_1_11:114271388-114271457:+|nuORF	REV__ENST00000544313.5_1_11:114271388-114271457:+|nuORF	MSMS	A375_MHC_IP_R2	2	712.9765014648438	2	712.973485	1423.93242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.801	1	59.548	59.048	60.048	0.74714								0	0	0	0.16334	1	22248	22248		1.3295	1.3295	1		+		33628	25985	24523	24696	32739	32739					0.23740807158765165
LSLAKKKKKK	10	Unmodified	_LSLAKKKKKK_					0	0	0		ENST00000205636.3_1_3:32524128-32524239:-|nuORF	ENST00000205636.3_1_3:32524128-32524239:-|nuORF	ENST00000205636.3_1_3:32524128-32524239:-|nuORF	MSMS	A375_MHC_IP_R1	1	586.4320678710938	2	586.416083	1170.81761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.53	1	147.53	147.03	148.03	0								0	0	0	0.15642	1	56374	56374		0	0	1				33629	10080	24524	24697	32740	32740					0.23903684904257716
LSLASSVLPF	10	Unmodified	_LSLASSVLPF_					0	0	0		ENST00000461497.5_1_3:145787423-145787570:-|nuORF	ENST00000461497.5_1_3:145787423-145787570:-|nuORF	ENST00000461497.5_1_3:145787423-145787570:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	517.69970703125	2	517.30005	1032.58555	-0.77628	-0.00040157	0.13904	7.1927E-05	-0.63724	-0.00032964	517.3001169574826	67.139	0.65973	67.875	67.546	68.205	0.73631					39	12	4	0	0	0	0.16517	1	25380	25380		52.268	8.4101	1	20357000			33630	12187	24525	24698	32741	32741					0.07055797762859584
LSLASYEEE	9	Unmodified	_LSLASYEEE_					0	0	0		ENSG00000011028|ENST00000303375|MRC2	ENSG00000011028|ENST00000303375|MRC2	ENSG00000011028|ENST00000303375|MRC2	MULTI-MSMS	A375_MHC_IP_R1	1	520.7322387695312	2	520.742762	1039.47097	-0.56474	-0.00029408	0.073416	3.8231E-05	-0.49132	-0.00025585	520.7427551183695	83.608	0.96588	83.608	83.175	84.141	0					41	18	3	0	0	0	0.72985	1	30463	30463		4.3292	0	1	12720000			33631	990	24526	24699	32742	32742					-0.04718556509737937
LSLAVRKSKVV	11	Unmodified	_LSLAVRKSKVV_					0	0	0			REV__nc|ENSG00000157193|Q14114-4|LRP8	REV__nc|ENSG00000157193|Q14114-4|LRP8	MULTI-MSMS	A375_MHC_IP_R2	2	400.9991760253906	3	400.599324	1198.77614	-0.35996	-0.0001442	0.015454	6.1908E-06	-0.34451	-0.00013801	400.5992939522498	20.341	2.0788	20.952	20.197	22.276	0.61029					116	40	5	0	0	0	0.73239	1	6182	6182		6.6235	2.2173	1	56894000	+		33632	20017	24527	24700	32743	32743					0.18470504144943334
LSLAVSGPAV	10	Unmodified	_LSLAVSGPAV_					0	0	0			REV__ENST00000344337.10_1_3:122215408-122233633:-|nuORF	REV__ENST00000344337.10_1_3:122215408-122233633:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	456.6345520019531	2	457.271293	912.528032	0.25018	0.0001144	-0.093508	-4.2759E-05	0.15668	7.1644E-05	457.271116587486	44.692	0.40693	44.692	44.471	44.878	0					18	7	3	0	0	0	0.48072	1	15616	15616		37.974	1.847	1	2592300	+		33633	23758	24528	24701	32744	32744					0.06826955557289693
LSLCEYKDI	9	Unmodified	_LSLCEYKDI_					0	0	0		ENSG00000077044|ENST00000264057|DGKD;nc|ENSG00000077044|Q16760-2|DGKD	ENSG00000077044|ENST00000264057|DGKD	ENSG00000077044|ENST00000264057|DGKD	MSMS	A375_MHC_IP_R2	2	542.2322387695312	2	542.273175	1082.5318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.516	1	69.251	68.751	69.751	0.73511								0	0	0	0.14767	1	25964	25964		25.399	3.8623	1				33634	1643	24529	24702	32745	32745					-0.006167427311766005
LSLCRLMAPY	10	Unmodified	_LSLCRLMAPY_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	583.1985473632812	2	583.806662	1165.59877	-0.35483	-0.00020715	-0.18185	-0.00010616	-0.53668	-0.00031331	583.805860251022	91.894	0.45473	92.631	92.429	92.884	0.7366					17	8	3	0	0	0	0.92227	1	34987	34987		13.042	4.2971	1	2404700			33635	9025	24530	24703	32746	32746					0.022595892789468053
LSLCSSUNL	9	Unmodified	_LSLCSSUNL_					0	0	0			REV__ENSG00000162430|ENST00000361547|SELENON	REV__ENSG00000162430|ENST00000361547|SELENON	MSMS	A375_MHC_IP_R2	2	494.1503601074219	2	494.189571	986.364589	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.156	1	44.925	44.425	45.425	0.7691								0	0	0	0.15486	1	16473	16473		0	0	0		+		33636	20253	24531	24704	32747	32747					-0.12913834111020606
LSLDDQPGTPD	11	Unmodified	_LSLDDQPGTPD_					0	0	0			REV__ENST00000588320.1_1_17:40720799-40723580:+|nuORF	REV__ENST00000588320.1_1_17:40720799-40723580:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	579.6242065429688	2	579.269675	1156.5248	-0.33369	-0.00019329	0.58612	0.00033952	0.25243	0.00014623	579.2701274746037	46.75	0.20348	46.75	46.596	46.799	0					6	3	2	0	0	0	0.99676	1	16385	16385		1.1933	0	1	753960	+		33637	26414	24532	24705	32748	32748					-0.047203840780412065
LSLDELHRKY	10	Unmodified	_LSLDELHRKY_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1;ENST00000488733.1_1_1:116916118-116927596:+|nuORF	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	A375_MHC_IP_R1	1	425.6346740722656	3	425.234822	1272.68264	-0.2378	-0.00010112	-0.57409	-0.00024412	-0.81189	-0.00034524	425.23439854396275	41.024	0.70726	41.024	40.712	41.419	0					28	10	4	0	0	0	0.018806	2	14105	14080;14105		66.683	28.912	1	18558000			33638	6659	24533	24706	32749;32750	32750					0.05720159971860994
LSLDELHRKY	10	Unmodified	_LSLDELHRKY_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1;ENST00000488733.1_1_1:116916118-116927596:+|nuORF	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-SECPEP	A375_MHC_IP_R1	1	637.7059326171875	2	637.348594	1272.68264	-0.82161	-0.00052365	-0.53441	-0.00034061	-1.356	-0.00086426	637.3480974579743	41.007	0.30135	41.007	40.813	41.114	0					7	5	2	0	0	0	0.91796	1	14079	14079		10.151	5.2536	1	1380500			33639	6659	24533	24706	32751	32751					0.05720159971860994
LSLDELHRKY	10	Unmodified	_LSLDELHRKY_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1;ENST00000488733.1_1_1:116916118-116927596:+|nuORF	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	A375_MHC_IP_R2	2	425.63433837890625	3	425.234822	1272.68264	-0.22178	-9.4307E-05	-0.82887	-0.00035246	-1.0506	-0.00044677	425.23435925015417	40.187	0.55798	40.961	40.727	41.285	0.77451					26	10	4	0	0	0	0.10955	3	14870	14870;14872;14927		63.227	32.796	1	17934000			33640	6659	24533	24706	32752;32753;32754	32752					0.05720159971860994
LSLDELHRKY	10	Unmodified	_LSLDELHRKY_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1;ENST00000488733.1_1_1:116916118-116927596:+|nuORF	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-SECPEP	A375_MHC_IP_R2	2	637.7063598632812	2	637.348594	1272.68264	-0.83431	-0.00053175	-0.12663	-8.071E-05	-0.96094	-0.00061246	637.3485911343075	40.212	0.30455	40.986	40.828	41.133	0.77451					7	5	2	0	0	0	0.56884	1	14887	14887		48.073	22.052	1	1162100			33641	6659	24533	24706	32755	32755					0.05720159971860994
LSLDGNPKPI	10	Unmodified	_LSLDGNPKPI_					0	0	0		ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L	ENSG00000196141|ENST00000409140|SPATS2L	ENSG00000196141|ENST00000409140|SPATS2L	MULTI-SECPEP	A375_MHC_IP_R1	1	352.3490905761719	3	351.86948	1052.58661	0.086005	3.0262E-05	0.29957	0.00010541	0.38557	0.00013567	352.2047231391662	35.56	0.25587	35.56	35.421	35.676	0					6	4	2	0	0	0	0.92227	1	11781	11781		7.9454	5.6626	1	803120			33642	9004	24534	24707	32756	32756					0.062420121317472876
LSLDHILCT	9	Unmodified	_LSLDHILCT_					0	0	0			REV__ENST00000046640.7_1_17:3564587-3564764:+|nuORF	REV__ENST00000046640.7_1_17:3564587-3564764:+|nuORF	MSMS	A375_MHC_IP_R1	1	507.8260803222656	2	507.76806	1013.52157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.31	1	103.31	102.81	103.81	0								0	0	0	0.15411	1	37949	37949		14.838	0.93222	1		+		33643	23008	24535	24708	32757	32757					0.015346943342706254
LSLDNGYKY	9	Unmodified	_LSLDNGYKY_					0	0	0			REV__ZNF215|p.E356K|1|0.33|ENSG00000149054|chr11:6956043-6956043|G/A|missense_variant	REV__ZNF215|p.E356K|1|0.33|ENSG00000149054|chr11:6956043-6956043|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	536.6998901367188	2	536.769114	1071.52368	-0.84296	-0.00045247	-1.4745	-0.00079146	-2.3174	-0.0012439	536.7680336641694	80.402	0.70949	80.402	80.086	80.795	0					22	13	3	0	0	0	0.13797	1	29328	29328		43.858	7.7313	1	5519500	+		33644	29031	24536	24709	32758	32758					-0.00922553656278069
LSLDPFNLY	9	Unmodified	_LSLDPFNLY_					0	0	0			REV__ENSG00000197948|ENST00000435817|FCHSD1	REV__ENSG00000197948|ENST00000435817|FCHSD1	MULTI-SECPEP	A375_MHC_IP_R1	1	541.153076171875	2	541.281857	1080.54916	-0.75165	-0.00040685	0.06043	3.271E-05	-0.69122	-0.00037414	541.7841695986524	65.576	1.1717	65.576	65.206	66.377	0					32	22	2	0	0	0	0.3213	1	23949	23949		30.637	0	1	3068600	+		33645	22330	24537	24710	32759	32759					0.012109208661513549
LSLDQLFVF	9	Unmodified	_LSLDQLFVF_					0	0	0		ENST00000583660.5_1_11:117710519-117712798:-|nuORF	ENST00000583660.5_1_11:117710519-117712798:-|nuORF	ENST00000583660.5_1_11:117710519-117712798:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	541.2019653320312	2	541.30005	1080.58555	-0.73905	-0.00040005	0.94406	0.00051102	0.20501	0.00011097	541.3005227775268	134.19	0.71623	134.32	134.13	134.85	0.13901					24	13	4	0	0	0	0.38603	1	52849	52849		25.399	6.1423	1	33696000			33646	13697	24538	24711	32760	32760					0.04847797762840855
LSLDRLDYL	9	Unmodified	_LSLDRLDYL_					0	0	0			REV__nc|ENSG00000131725|Q5JSH3-4|WDR44	REV__nc|ENSG00000131725|Q5JSH3-4|WDR44	MULTI-SECPEP	A375_MHC_IP_R1	1	554.6204833984375	2	554.305864	1106.59717	-0.49933	-0.00027678	0.31401	0.00017406	-0.18532	-0.00010272	554.3059619428805	98.067	0.81357	98.067	97.743	98.557	0					35	15	5	0	0	0	0.67483	1	35914	35914		20.454	5.6154	1	4656300	+		33647	18618	24539	24712	32761	32761					0.048139947861727705
LSLDRLLAS	9	Unmodified	_LSLDRLLAS_					0	0	0		nc|ENSG00000079616|Q14807-2|KIF22;ENSG00000079616|ENST00000160827|KIF22	nc|ENSG00000079616|Q14807-2|KIF22	nc|ENSG00000079616|Q14807-2|KIF22	MULTI-SECPEP	A375_MHC_IP_R1	1	494.6947326660156	2	494.295299	986.576045	-0.47341	-0.000234	0.28301	0.00013989	-0.1904	-9.4114E-05	494.2951761135419	87.09	0.4577	87.09	86.831	87.289	0					12	8	2	0	0	0	0.5212	1	31984	31984		26.268	0	1	1333800			33648	1699	24540	24713	32762	32762					0.08222029477326487
LSLDRLLAS	9	Unmodified	_LSLDRLLAS_					0	0	0		nc|ENSG00000079616|Q14807-2|KIF22;ENSG00000079616|ENST00000160827|KIF22	nc|ENSG00000079616|Q14807-2|KIF22	nc|ENSG00000079616|Q14807-2|KIF22	MULTI-MSMS	A375_MHC_IP_R2	2	494.8741760253906	2	494.295299	986.576045	-0.32306	-0.00015969	-0.70521	-0.00034858	-1.0283	-0.00050827	494.2951860008406	86.087	0.55987	86.82	86.592	87.151	0.733					16	10	2	0	0	0	0.29123	1	32735	32735		31.268	0.6318	1	1456800			33649	1699	24540	24713	32763	32763					0.08222029477326487
LSLECREFHL	10	Unmodified	_LSLECREFHL_					0	0	0		ENST00000428046.7_1_15:43622876-43623026:+|nuORF	ENST00000428046.7_1_15:43622876-43623026:+|nuORF	ENST00000428046.7_1_15:43622876-43623026:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	416.3854064941406	3	416.213141	1245.61759	-0.43782	-0.00018223	2.4849	0.0010343	2.0471	0.00085203	416.54791694742096	36.632	0.15279	37.403	37.308	37.461	0.7709					4	2	2	0	0	0	0.92389	1	13330	13330		0.69767	0	1	405790			33650	11830	24541	24714	32764	32764					0.004608421743569124
LSLEGISLLV	10	Unmodified	_LSLEGISLLV_					0	0	0			REV__ENSG00000187010|ENST00000328664|RHD	REV__ENSG00000187010|ENST00000328664|RHD	MULTI-SECPEP	A375_MHC_IP_R1	1	522.7208251953125	2	522.320983	1042.62741	-0.40415	-0.00021109	0.41168	0.00021503	0.0075293	3.9327E-06	522.3211314316591	96.896	0.60793	96.896	96.68	97.288	0					17	11	3	0	0	0	0.33054	1	35615	35615		47.749	5.9091	1	1141700	+		33651	22003	24542	24715	32765	32765					0.10780353451400515
LSLEGISLLV	10	Unmodified	_LSLEGISLLV_					0	0	0			REV__ENSG00000187010|ENST00000328664|RHD	REV__ENSG00000187010|ENST00000328664|RHD	MULTI-MATCH	A375_MHC_IP_R2	2		2	522.320983	1042.62741	-0.52978	-0.00027671	-0.10062	-5.2557E-05	-0.6304	-0.00032927	522.3207856669322	96.015	0.4061	96.766	96.5	96.906	0.75045	-0.064837	-0.00024418	NaN	47.749	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1042800	+		33652	22003	24542	24715							0.10780353451400515
LSLEHRLVK	9	Unmodified	_LSLEHRLVK_					0	0	0			REV__ENSG00000198742|ENST00000361368|SMURF1	REV__ENSG00000198742|ENST00000361368|SMURF1	MULTI-SECPEP	A375_MHC_IP_R1	1	548.2135620117188	2	547.837665	1093.66078	-0.60083	-0.00032916	-0.12688	-6.9511E-05	-0.72771	-0.00039867	547.8375360282888	58.835	0.5605	58.835	58.582	59.143	0					18	10	2	0	0	0	0.67483	1	21115	21115		10.074	0	1	1790200	+		33653	22409	24543	24716	32766	32766					0.11769400013940867
LSLEPPTLGP	10	Unmodified	_LSLEPPTLGP_					0	0	0		ENST00000474879.6_3_22:50941400-50941703:-|nuORF	ENST00000474879.6_3_22:50941400-50941703:-|nuORF	ENST00000474879.6_3_22:50941400-50941703:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	512.6886596679688	2	512.289682	1022.56481	-0.61698	-0.00031608	-2.4945	-0.0012779	-3.1115	-0.001594	512.2886332860198	94.879	0.4585	94.879	94.651	95.109	0					13	8	2	0	0	0	0.52461	1	34903	34903		43.858	3.4097	1	1919200			33654	12412	24544	24717	32767	32767					0.05443207383200388
LSLETHGIVY	10	Unmodified	_LSLETHGIVY_					0	0	0		ENST00000540779.1_1_12:122359430-122370014:+|nuORF;nc|ENSG00000158023|Q8TBY9-3|CFAP251	ENST00000540779.1_1_12:122359430-122370014:+|nuORF	ENST00000540779.1_1_12:122359430-122370014:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	565.6582641601562	2	566.305864	1130.59717	-0.658	-0.00037263	0.19733	0.00011175	-0.46067	-0.00026088	566.305815819781	33.265	0.61137	34.017	33.686	34.298	0.75225					19	11	2	0	0	0	0.83086	1	11813	11813		15.847	7.937	1	2772900			33655	13276	24545	24718	32768	32768					0.03709994786186144
LSLEYIGKIE	10	Unmodified	_LSLEYIGKIE_					0	0	0		tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1	tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1	tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	583.1723022460938	2	582.829172	1163.64379	-0.43362	-0.00025273	1.0362	0.00060393	0.60258	0.0003512	582.829842194911	84.739	0.86928	84.739	84.442	85.311	0					39	16	4	0	0	0	0.70179	1	30971	30971		11.495	2.1116	1	9746300			33656	29968	24546	24719	32769	32769					0.06851434617487939
LSLEYIIALCK	11	Unmodified	_LSLEYIIALCK_					0	0	0		tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	MSMS	A375_MHC_IP_R2	2	633.35595703125	2	633.362324	1264.7101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.657	1	100.42	99.919	100.92	0.76278								0	0	0	0.16203	1	37801	37801		8.1555	1.5252	1				33657	29746	24547	24720	32770	32770					0.08832927187859241
LSLFEKDEY	9	Unmodified	_LSLFEKDEY_					0	0	0			REV__ENSG00000198077|ENST00000301146|CYP2A7	REV__ENSG00000198077|ENST00000301146|CYP2A7	MULTI-SECPEP	A375_MHC_IP_R2	2	381.2850646972656	3	381.857128	1142.54956	-0.33498	-0.00012791	3.3282	0.0012709	2.9933	0.001143	381.8585657696894	36.48	0.20222	37.251	37.106	37.308	0.7709					5	3	2	0	0	0	0.76187	1	13261	13261		4.5289	0	1	753810	+		33658	22322	24548	24721	32771	32771					-0.016017042046541974
LSLFHAQLAY	10	Unmodified	_LSLFHAQLAY_					0	0	0		nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E	nc|ENSG00000154001|Q16537-3|PPP2R5E	nc|ENSG00000154001|Q16537-3|PPP2R5E	MULTI-MSMS	A375_MHC_IP_R2	2	582.2161865234375	2	581.816399	1161.61824	-0.54579	-0.00031755	1.8438	0.0010727	1.298	0.00075519	581.817624914568	34.819	0.4548	35.582	35.273	35.727	0.76338					11	8	2	0	0	0	0.68889	1	12617	12617		16.149	2.2431	1	1464300			33659	6053	24549	24722	32772	32772					0.04390004885704002
LSLGATVRSF	10	Unmodified	_LSLGATVRSF_					0	0	0		CDC14A|p.S468L|1|0.27|ENSG00000079335|chr1:100498189-100498189|C/T|missense_variant	CDC14A|p.S468L|1|0.27|ENSG00000079335|chr1:100498189-100498189|C/T|missense_variant	CDC14A|p.S468L|1|0.27|ENSG00000079335|chr1:100498189-100498189|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	525.6973266601562	2	525.800749	1049.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.307	1	94.046	93.546	94.546	0.73902								0	0	0	0.14983	1	35473	35473		18.146	1.0335	1				33660	341	24550	24723	32773	32773					0.06413431851615314
LSLGCTGA	8	Unmodified	_LSLGCTGA_					0	0	0		ENST00000498020.1_1_6:32906368-32908584:-|nuORF;ENSG00000242574|ENST00000418107|HLA-DMB	ENST00000498020.1_1_6:32906368-32908584:-|nuORF	ENST00000498020.1_1_6:32906368-32908584:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	361.58111572265625	2	361.181089	720.347625	0.02121	7.6607E-06	-0.08277	-2.9895E-05	-0.06156	-2.2234E-05	361.1810242029431	27.511	1.16	27.511	27.179	28.339	0					38	22	2	0	0	0	0.97144	1	8349	8349		5.2307	4.7059	1	2195000			33661	9800	24551	24724	32774	32774					-0.02373466371216182
LSLGELRR	8	Unmodified	_LSLGELRR_					0	0	0			REV__ENST00000562846.1_1_16:67595834-67596182:-|nuORF	REV__ENST00000562846.1_1_16:67595834-67596182:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	473.186767578125	2	472.287808	942.561064	-0.57964	-0.00027376	-0.13757	-6.4974E-05	-0.71721	-0.00033873	472.2877271991767	130.62	1.7281	130.83	130.1	131.82	0.2142					77	33	4	0	0	0	0.5503	2	51309	51309;51317		46.921	14.804	1	149000000	+		33662	26195	24552	24725	32775;32776	32775					0.08748582400005489
LSLGMMPVF	9	Unmodified	_LSLGMMPVF_					0	0	0			REV__ENSG00000184698|ENST00000642046|OR51M1	REV__ENSG00000184698|ENST00000642046|OR51M1	MULTI-MSMS	A375_MHC_IP_R1	1	498.1588134765625	2	497.758649	993.502746	-0.093314	-4.6448E-05	0.40451	0.00020135	0.3112	0.0001549	497.7588067237113	70.06	0.65974	70.06	69.732	70.392	0					19	12	2	0	0	0	0.46038	1	25446	25446		21.747	1.293	1	2529800	+		33663	21833	24553	24726	32777	32777					0.005734414388484765
LSLGRARSVVH	11	Unmodified	_LSLGRARSVVH_					0	0	0		HUS1B|p.S120L|1|0.47|ENSG00000188996|chr6:656586-656586|G/A|missense_variant	HUS1B|p.S120L|1|0.47|ENSG00000188996|chr6:656586-656586|G/A|missense_variant	HUS1B|p.S120L|1|0.47|ENSG00000188996|chr6:656586-656586|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	598.2544555664062	2	597.856921	1193.69929	-0.20032	-0.00011976	-1.5007	-0.00089719	-1.701	-0.001017	597.8558688207906	127.95	0.65903	127.95	127.77	128.43	0					43	12	4	0	0	0	0.73459	1	49092	49092		4.5289	1.2476	1	123130000			33664	14140	24554	24727	32778	32778					0.11018705648439209
LSLGWRLF	8	Unmodified	_LSLGWRLF_					0	0	0			REV__AluSx1_dup71795|chr11:89242203-89242509:-|3.1424341242328664|0.0010071562561761|11.61|439.0|16|1|anti-sense	REV__AluSx1_dup71795|chr11:89242203-89242509:-|3.1424341242328664|0.0010071562561761|11.61|439.0|16|1|anti-sense	MSMS	A375_MHC_IP_R1	1	496.3883056640625	2	496.28982	990.565087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.086	1	87.086	86.586	87.586	0								0	0	0	0.16876	1	31948	31948		24.021	3.5669	1		+		33665	15380	24555	24728	32779	32779					0.06942671893693841
LSLHDGWFW	9	Unmodified	_LSLHDGWFW_					0	0	0			REV__ENST00000339728.5_1_2:235403839-235404196:-|nuORF	REV__ENST00000339728.5_1_2:235403839-235404196:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	580.6609497070312	2	580.779816	1159.54508	-0.245	-0.00014229	-1.2103	-0.00070293	-1.4553	-0.00084522	580.7789407126077	73.418	0.20287	74.153	73.99	74.192	0.73541					5	3	2	0	0	0	0.75466	1	27843	27843		7.9102	0	1	1168600	+		33666	23715	24556	24729	32780	32780					-0.028311238369042258
LSLHKKKIV	9	Unmodified	_LSLHKKKIV_					0	0	0		ENST00000553576.5_1_14:77901517-77909492:-|nuORF	ENST00000553576.5_1_14:77901517-77909492:-|nuORF	ENST00000553576.5_1_14:77901517-77909492:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	355.5794677734375	3	355.90961	1064.707	-0.24082	-8.5709E-05	0.0015994	5.6925E-07	-0.23922	-8.514E-05	355.90951377312194	31.566	0.40823	32.295	31.985	32.393	0.72892					12	7	2	0	0	0	0.79713	1	11208	11208		3.8763	0	1	1095500			33667	13402	24557	24730	32781	32781					0.17723464916025478
LSLHNDHPY	9	Unmodified	_LSLHNDHPY_					0	0	0		ENST00000576921.1_1_16:3072866-3073436:-|nuORF;nc|ENSG00000103145|Q9NWW0-2|HCFC1R1;ENSG00000103145|ENST00000248089|HCFC1R1	ENST00000576921.1_1_16:3072866-3073436:-|nuORF	ENST00000576921.1_1_16:3072866-3073436:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	366.2453918457031	3	365.845446	1094.51451	0.046752	1.7104E-05	-0.098936	-3.6195E-05	-0.052184	-1.9091E-05	365.845379773459	28.928	0.25203	28.928	28.795	29.047	0					7	4	2	0	0	0	0.77003	1	9017	9017		11.495	0.6952	1	1905900			33668	2422	24558	24731	32782	32782					-0.028969022219598628
LSLHYLLLPY	10	Unmodified	_LSLHYLLLPY_					0	0	0		ENST00000493944.5_1_7:6618325-6621932:+|nuORF;ENST00000474097.5_1_7:6620192-6623202:+|nuORF;ENSG00000136247|ENST00000335965|ZDHHC4	ENST00000493944.5_1_7:6618325-6621932:+|nuORF	ENST00000493944.5_1_7:6618325-6621932:+|nuORF	MSMS	A375_MHC_IP_R2	2	616.4173583984375	2	616.357899	1230.70125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.467	1	100.23	99.729	100.73	0.7619								0	0	0	0.15308	1	37731	37731		10.824	4.1008	1				33669	4771	24559	24732	32783	32783					0.09512321613715358
LSLICLMNF	9	Unmodified	_LSLICLMNF_					0	0	0		ENST00000371728.7_1_10:91465142-91465181:+|nuORF	ENST00000371728.7_1_10:91465142-91465181:+|nuORF	ENST00000371728.7_1_10:91465142-91465181:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	527.1752319335938	2	527.277206	1052.53986	-0.41057	-0.00021648	0.21192	0.00011174	-0.19865	-0.00010474	527.2772631885133	42.449	0.30543	43.222	43.014	43.319	0.7724					8	5	2	0	0	0	0.73363	1	15809	15809		15.847	1.2655	1	1171100			33670	11183	24560	24733	32784	32784					0.015691129845890828
LSLIFEEW	8	Unmodified	_LSLIFEEW_					0	0	0			REV__L1M5_dup28841|chr9:65483556-65484299:+|1.3564882829808078|0.0115049656346113|6.88|416.0|36|2|anti-sense	REV__L1M5_dup28841|chr9:65483556-65484299:+|1.3564882829808078|0.0115049656346113|6.88|416.0|36|2|anti-sense	MSMS	A375_MHC_IP_R1	1	518.69482421875	2	518.771126	1035.5277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.127	1	62.127	61.627	62.627	0								0	0	0	0.16876	1	22426	22426		38.151	0.17718	1		+		33671	26882	24561	24734	32785	32785					0.011355358374203206
LSLIWSVSV	9	Unmodified	_LSLIWSVSV_					0	0	0			REV__ENST00000396653.2_1_2:224630006-224642407:-|nuORF	REV__ENST00000396653.2_1_2:224630006-224642407:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.6944580078125	2	502.294768	1002.57498	-0.37692	-0.00018932	-0.18709	-9.3975E-05	-0.56401	-0.0002833	502.29467564348505	77.411	0.71078	77.411	77.133	77.844	0					22	13	2	0	0	0	0.14422	1	28317	28317		43.858	0	1	10480000	+		33672	24344	24562	24735	32786	32786					0.07379815108436105
LSLKGDDN	8	Unmodified	_LSLKGDDN_					0	0	0			REV__ENSG00000103154|ENST00000305202|NECAB2	REV__ENSG00000103154|ENST00000305202|NECAB2	MSMS	A375_MHC_IP_R1	1	431.1761779785156	2	431.219257	860.423961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.268	1	57.268	56.768	57.768	0								0	0	0	0.16876	1	20538	20538		18.135	0	1		+		33673	17254	24563	24736	32787	32787					-0.011833712702355115
LSLKNAKQL	9	Unmodified	_LSLKNAKQL_					0	0	0		ENSG00000122728|ENST00000242310|TAF1L;nc|ENSG00000147133|P21675-25|TAF1;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675|TAF1;ENSG00000147133|ENST00000423759|TAF1;nc|ENSG00000147133|P21675-1|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-13|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-21|TAF1;nc|ENSG00000147133|P21675-24|TAF1;nc|ENSG00000147133|P21675-23|TAF1	ENSG00000122728|ENST00000242310|TAF1L	ENSG00000122728|ENST00000242310|TAF1L	MULTI-SECPEP	A375_MHC_IP_R2	2	508.21826171875	2	507.818941	1013.62333	-1.0844	-0.00055066	0.66708	0.00033876	-0.41728	-0.0002119	507.8189306376294	57.501	0.45849	58.25	57.917	58.375	0.74895					18	8	3	0	0	0	0.47368	1	21752	21752		26.884	3.7352	1	2358800			33674	3804	24564	24737	32788	32788					0.1170630874833023
LSLKNLKKI	9	Unmodified	_LSLKNLKKI_					0	0	0		tr|U7SWF0|U7SWF0_FUSNUAmidophosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purFPE=3SV=1	tr|U7SWF0|U7SWF0_FUSNUAmidophosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purFPE=3SV=1	tr|U7SWF0|U7SWF0_FUSNUAmidophosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purFPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	352.3490905761719	3	352.909498	1055.70667	0.073123	2.5806E-05	0.5473	0.00019315	0.62042	0.00021895	353.24362614126693	35.467	0.30423	35.467	35.218	35.522	0					8	5	2	0	0	0	0.67539	1	11781	11781		21.537	6.2885	1	592210			33675	29807	24565	24738	32789	32789					0.1810404519619624
LSLKPRIW	8	Unmodified	_LSLKPRIW_					0	0	0			REV__ENSG00000151320|ENST00000280979|AKAP6	REV__ENSG00000151320|ENST00000280979|AKAP6	MULTI-SECPEP	A375_MHC_IP_R2	2	506.6781005859375	2	506.818744	1011.62294	-0.73113	-0.00037055	0.45884	0.00023255	-0.2723	-0.000138	506.8189149037835	76.515	0.45734	77.256	76.994	77.451	0.74052					12	8	2	0	0	0	0.97144	1	29022	29022		5.2307	0	1	1050100	+		33676	19747	24566	24739	32790	32790					0.11758933819135109
LSLKRLEGF	9	Unmodified	_LSLKRLEGF_					0	0	0			REV__tr|U7SZJ7|U7SZJ7_FUSNUGeneralsecretionpathwayproteinFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00777PE=3SV=1	REV__tr|U7SZJ7|U7SZJ7_FUSNUGeneralsecretionpathwayproteinFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00777PE=3SV=1	MSMS	A375_MHC_IP_R1	1	354.95709228515625	3	354.88172	1061.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.865	1	28.865	28.365	29.365	0								0	0	0	0.15486	1	8957	8957		4.5289	0.94181	1		+		33677	28650	24567	24740	32791	32791					0.09498308748334239
LSLKVLRKL	9	Unmodified	_LSLKVLRKL_					0	0	0		ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11;ENST00000507640.1_1_5:61763053-61779022:+|nuORF	ENSG00000086200|ENST00000325324|IPO11	ENSG00000086200|ENST00000325324|IPO11	MULTI-SECPEP	A375_MHC_IP_R2	2	357.9309387207031	3	357.253376	1068.7383	-0.33475	-0.00011959	0.15433	5.5135E-05	-0.18042	-6.4454E-05	357.2534739426488	50.633	0.35481	51.387	51.209	51.564	0.75406					10	6	2	0	0	0	0.77948	1	19007	19007		10.151	0	1	944140			33678	1831	24568	24741	32792	32792					0.20668037950144935
LSLKYIAPN	9	Unmodified	_LSLKYIAPN_					0	0	0			REV__SLC14A2|p.P885S|1|0.32|ENSG00000132874|chr18:45682409-45682409|C/T|missense_variant	REV__SLC14A2|p.P885S|1|0.32|ENSG00000132874|chr18:45682409-45682409|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	509.72039794921875	2	509.800217	1017.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.731	1	94.731	94.231	95.231	0								0	0	0	0.14631	1	34819	34819		27.629	0.74515	1		+		33679	27973	24569	24742	32793	32793					0.07779217482709555
LSLLARRAW	9	Unmodified	_LSLLARRAW_					0	0	0			REV__nc|ENSG00000102316|Q9UNF1-2|MAGED2	REV__nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-SECPEP	A375_MHC_IP_R1	1	543.7316284179688	2	543.33255	1084.65055	-0.012779	-6.9435E-06	-1.6435	-0.00089298	-1.6563	-0.00089992	543.3312977614376	44.946	0.55793	44.946	44.523	45.081	0					12	10	2	0	0	0	0.78351	1	15747	15747		4.756	0	1	1960600	+		33680	17215	24570	24743	32794	32794					0.11160837079364683
LSLLDHEYL	9	Unmodified	_LSLLDHEYL_					0	0	0		ENST00000522492.1_1_5:148651531-148685943:+|nuORF;nc|ENSG00000157510|Q8TED9-3|AFAP1L1;ENST00000455574.6_1_5:148651531-148691878:+|nuORF;nc|ENSG00000157510|Q8TED9-2|AFAP1L1;ENSG00000157510|ENST00000296721|AFAP1L1	ENST00000522492.1_1_5:148651531-148685943:+|nuORF	ENST00000522492.1_1_5:148651531-148685943:+|nuORF	MSMS	A375_MHC_IP_R1	1	551.7354736328125	2	551.792589	1101.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.36	1	134.36	133.86	134.86	0								0	0	0	0.13141	1	51814	51814		32.305	8.2849	1				33681	6249	24571	24744	32795	32795					0.02390305894869016
LSLLEKIW	8	Unmodified	_LSLLEKIW_					0	0	0		ENST00000291574.8_1_21:45497625-45499446:+|nuORF	ENST00000291574.8_1_21:45497625-45499446:+|nuORF	ENST00000291574.8_1_21:45497625-45499446:+|nuORF	MSMS	A375_MHC_IP_R2	2	501.47607421875	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.226	1	79.971	79.471	80.471	0.74474								0	0	0	0.16876	1	30067	30067		23.148	1.4018	1				33682	10476	24572	24745	32796	32796					0.09544405488077246
LSLLHRILLY	10	Unmodified	_LSLLHRILLY_					0	0	0		ENST00000356300.8_1_14:24047750-24047927:-|nuORF	ENST00000356300.8_1_14:24047750-24047927:-|nuORF	ENST00000356300.8_1_14:24047750-24047927:-|nuORF	MSMS	A375_MHC_IP_R2	2	620.8555908203125	2	620.892441	1239.77033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.731	1	99.491	98.991	99.991	0.75977								0	0	0	0.1552	1	37452	37452		3.9444	0.3479	1				33683	10962	24573	24746	32797	32797					0.16003405633296097
LSLLHSPFSTF	11	Unmodified	_LSLLHSPFSTF_					0	0	0			REV__nc|ENSG00000147162|O15294-2|OGT	REV__nc|ENSG00000147162|O15294-2|OGT	MSMS	A375_MHC_IP_R1	1	624.6363525390625	2	624.834788	1247.65502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.17	1	65.17	64.67	65.67	0								0	0	0	0.16191	1	23590	23590		8.7454	0	1		+		33684	27279	24574	24747	32798	32798					0.04110256711624061
LSLLRGRIT	9	Unmodified	_LSLLRGRIT_					0	0	0			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MULTI-MSMS	A375_MHC_IP_R1	1	515.23193359375	2	514.832383	1027.65021	-0.41522	-0.00021377	-0.14544	-7.4878E-05	-0.56066	-0.00028865	514.8323551376616	62.356	0.51218	62.356	62.148	62.66	0					14	9	2	0	0	0	0.38603	1	22556	22556		25.399	0	1	2047200	+		33685	22389	24575	24748	32799	32799					0.13749417359508698
LSLLVLCLCL	10	Unmodified	_LSLLVLCLCL_					0	0	0			REV__ENST00000519759.1_1_5:156649807-156665140:+|nuORF	REV__ENST00000519759.1_1_5:156649807-156665140:+|nuORF	MSMS	A375_MHC_IP_R1	1	545.45751953125	2	545.324156	1088.63376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.068	1	92.068	91.568	92.568	0								0	0	0	0.15283	1	33832	33832		11.64	0.14559	1		+		33686	25689	24576	24749	32800	32800					0.09298832086869879
LSLNSLLP	8	Unmodified	_LSLNSLLP_					0	0	0		ENSG00000068323|ENST00000315869|TFE3;TFE3|p.S406Gfs*19|1|1.0|ENSG00000068323|chrX:49031447-49031465|GGCTCTCCAGGTCTTTGGA/-|frameshift_variant	ENSG00000068323|ENST00000315869|TFE3	ENSG00000068323|ENST00000315869|TFE3	MULTI-SECPEP	A375_MHC_IP_R1	1	429.16064453125	2	428.760561	855.506569	-0.024109	-1.0337E-05	0.10088	4.3254E-05	0.076773	3.2917E-05	428.7606512023563	51.956	0.61192	51.956	51.625	52.237	0					18	11	2	0	0	0	0.73227	1	18468	18468		37.974	0	1	4642800			33687	1456	24577	24750	32801	32801					0.07303570528563341
LSLNSLLP	8	Unmodified	_LSLNSLLP_					0	0	0		ENSG00000068323|ENST00000315869|TFE3;TFE3|p.S406Gfs*19|1|1.0|ENSG00000068323|chrX:49031447-49031465|GGCTCTCCAGGTCTTTGGA/-|frameshift_variant	ENSG00000068323|ENST00000315869|TFE3	ENSG00000068323|ENST00000315869|TFE3	MULTI-SECPEP	A375_MHC_IP_R2	2	429.1602783203125	2	428.760561	855.506569	-0.32994	-0.00014146	-0.10791	-4.6267E-05	-0.43784	-0.00018773	428.7605112140338	51.152	0.65712	51.905	51.614	52.271	0.75354					18	12	2	0	0	0	0.55873	1	19236	19236		41.84	3.8656	1	2283100			33688	1456	24577	24750	32802	32802					0.07303570528563341
LSLPDSCCV	9	2 Carbamidomethyl (C)	_LSLPDSC(Carbamidomethyl (C))C(Carbamidomethyl (C))V_	LSLPDSC(1)C(1)V		LSLPDSC(51)C(51)V		0	2	0			REV__ENST00000441488.6_1_11:67925157-67938746:-|nuORF	REV__ENST00000441488.6_1_11:67925157-67938746:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	526.1326904296875	2	525.73336	1049.45217	-0.52218	-0.00027453	-1.3051	-0.00068612	-1.8273	-0.00096065	525.7329588640027	39.984	0.45573	40.759	40.524	40.98	0.77451					29	8	4	0	0	0	0.098973	1	14788	14788		50.855	6.448	1	15834000	+		33689	17612	24578	24751	32803	32803	73;74				-0.07058132676820605
LSLPRFPSV	9	Unmodified	_LSLPRFPSV_					0	0	0		ENST00000536668.2_1_12:10999664-11034822:-|nuORF;ENSG00000111215|ENST00000228811|PRR4	ENST00000536668.2_1_12:10999664-11034822:-|nuORF	ENST00000536668.2_1_12:10999664-11034822:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	508.16717529296875	2	508.300384	1014.58622	-0.85351	-0.00043384	0.12317	6.2609E-05	-0.73034	-0.00037123	508.30045321906834	70.845	1.4679	71.579	71.352	72.82	0.73421					36	28	2	0	0	0	0.49205	1	26843	26843		34.402	6.7729	1	16561000			33690	2971	24579	24752	32804	32804					0.07950637202566213
LSLPRRWRWLG	11	Unmodified	_LSLPRRWRWLG_					0	0	0		ENST00000338745.10_3_3:18465897-18466173:-|nuORF	ENST00000338745.10_3_3:18465897-18466173:-|nuORF	ENST00000338745.10_3_3:18465897-18466173:-|nuORF	MSMS	A375_MHC_IP_R1	1	480.69537353515625	3	480.6176	1438.83097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.17	1	131.17	130.67	131.67	0								0	0	0	0.16334	1	50570	50570		1.3296	0.11481	1				33691	10838	24580	24753	32805	32805					0.1291093573620401
LSLPSAPATW	10	Unmodified	_LSLPSAPATW_					0	0	0		ENST00000336596.6_1_3:89156791-89156962:+|nuORF	ENST00000336596.6_1_3:89156791-89156962:+|nuORF	ENST00000336596.6_1_3:89156791-89156962:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	522.1820678710938	2	521.782025	1041.5495	-0.10493	-5.475E-05	-0.044962	-2.346E-05	-0.14989	-7.8211E-05	521.7818586439025	112.97	0.45206	112.97	112.74	113.19	0					14	8	2	0	0	0	0.1433	1	41435	41435		56.177	12.319	1	2176100			33692	10818	24581	24754	32806	32806					0.030383405859765844
LSLPSAPATW	10	Unmodified	_LSLPSAPATW_					0	0	0		ENST00000336596.6_1_3:89156791-89156962:+|nuORF	ENST00000336596.6_1_3:89156791-89156962:+|nuORF	ENST00000336596.6_1_3:89156791-89156962:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	521.782025	1041.5495	-0.39712	-0.00020721	-0.31301	-0.00016332	-0.71013	-0.00037054	521.7820728414449	112.19	0.50848	112.91	112.71	113.22	0.72459	-0.026898	-0.00022949	NaN	56.177	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1269800			33693	10818	24581	24754							0.030383405859765844
LSLQAWGSGGA	11	Unmodified	_LSLQAWGSGGA_					0	0	0			REV__nc|ENSG00000008130|O95544-2|NADK	REV__nc|ENSG00000008130|O95544-2|NADK	MULTI-MSMS	A375_MHC_IP_R2	2	524.1668701171875	2	523.766906	1045.51926	-1.0126	-0.00053035	-0.97691	-0.00051167	-1.9895	-0.001042	523.7672264635676	33.935	0.40371	34.687	34.45	34.853	0.75225					12	7	2	0	0	0	0.57844	1	12207	12207		24.991	24.991	1	2488400	+		33694	27090	24582	24755	32807	32807					-0.0016801807917090628
LSLQCIWA	8	Unmodified	_LSLQCIWA_					0	0	0			REV__ENSG00000179832|ENST00000326134|MROH1	REV__ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	A375_MHC_IP_R2	2	467.646240234375	2	467.246763	932.478974	-0.42836	-0.00020015	-0.38799	-0.00018128	-0.81634	-0.00038143	467.24681440017946	94.113	2.539	94.858	94.412	96.951	0.74473					89	49	4	0	0	0	0.7758	1	35716	35716		10.183	0	1	5202200	+		33695	21580	24583	24756	32808	32808					0.010033439966719016
LSLQDLIGY	9	Unmodified	_LSLQDLIGY_					0	0	0		ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;RYR2|p.V3402Sfs*10|1|0.5|ENSG00000198626|chr1:237709538-237709539|-/A|frameshift_variant;RYR2|p.E492*|1|0.44|ENSG00000198626|chr1:237454571-237454572|-/T|frameshift_variant	ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-SECPEP	A375_MHC_IP_R1	1	511.66925048828125	2	511.281857	1020.54916	-0.61813	-0.00031604	2.7942	0.0014286	2.176	0.0011126	511.2829486400692	65.945	0.76094	65.945	65.717	66.478	0					26	14	3	0	0	0	0.67483	1	24055	24055		10.074	0	1	1641300			33696	9292	24584	24757	32809	32809					0.03970920866152028
LSLQRENFKK	10	Unmodified	_LSLQRENFKK_					0	0	0		nc|ENSG00000140527|Q6P2C0-2|WDR93;ENSG00000140527|ENST00000268130|WDR93	nc|ENSG00000140527|Q6P2C0-2|WDR93	nc|ENSG00000140527|Q6P2C0-2|WDR93	MULTI-MSMS	A375_MHC_IP_R2	2	421.9788513183594	3	421.5787	1261.71427	-0.40683	-0.00017151	0.13842	5.8356E-05	-0.26841	-0.00011316	421.5787556416285	19.481	0.60826	20.087	19.836	20.445	0.60612					20	11	2	0	0	0	0.51689	1	5997	5997		27.088	3.1242	1	2196800			33697	5164	24585	24758	32810	32810					0.0938815272577358
LSLRARPV	8	Unmodified	_LSLRARPV_					0	0	0		ENST00000469820.1_1_X:102884578-102884773:+|nuORF	ENST00000469820.1_1_X:102884578-102884773:+|nuORF	ENST00000469820.1_1_X:102884578-102884773:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	456.6923522949219	2	456.292894	910.571235	-0.36784	-0.00016785	-0.060372	-2.7547E-05	-0.42822	-0.00019539	456.29280830394833	36.144	0.5111	36.915	36.646	37.157	0.7709					15	9	2	0	0	0	0.77515	1	13176	13176		12.532	1.7076	1	2041400			33698	12328	24586	24759	32811	32811					0.11237190125223151
LSLRARPV	8	Unmodified	_LSLRARPV_					0	0	0		ENST00000469820.1_1_X:102884578-102884773:+|nuORF	ENST00000469820.1_1_X:102884578-102884773:+|nuORF	ENST00000469820.1_1_X:102884578-102884773:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	456.292894	910.571235	-0.17378	-7.9295E-05	0.30023	0.00013699	0.12645	5.7699E-05	456.2929336350397	37.174	0.60833	37.174	36.845	37.454	0	0.12925	0.0001216	NaN	12.532	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2750600			33699	12328	24586	24759							0.11237190125223151
LSLRIKLLVSE	11	Unmodified	_LSLRIKLLVSE_					0	0	0		ACSM2B|p.P175L|1|0.4|ENSG00000066813|chr16:20555341-20555341|G/A|missense_variant	ACSM2B|p.P175L|1|0.4|ENSG00000066813|chr16:20555341-20555341|G/A|missense_variant	ACSM2B|p.P175L|1|0.4|ENSG00000066813|chr16:20555341-20555341|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	636.1271362304688	2	635.908288	1269.80202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.59	1	118.2	117.7	118.7	0.60909								0	0	0	0.16249	1	44519	44519		5.7319	0.43497	1				33700	36	24587	24760	32812	32812					0.17791353596567205
LSLRLRYDP	9	Unmodified	_LSLRLRYDP_					0	0	0			REV__nc|ENSG00000165506|Q9NVR5-2|DNAAF2	REV__nc|ENSG00000165506|Q9NVR5-2|DNAAF2	MULTI-SECPEP	A375_MHC_IP_R1	1	567.2032470703125	2	566.827298	1131.64004	-0.29816	-0.000169	-0.030137	-1.7082E-05	-0.32829	-0.00018609	566.8275431901907	51.043	0.35546	51.043	50.915	51.27	0					10	6	2	0	0	0	0.73363	1	18151	18151		6.7232	0	1	829580	+		33701	20589	24588	24761	32813	32813					0.07948809634262943
LSLRQHELSF	10	Unmodified	_LSLRQHELSF_					0	0	0			REV__ENST00000540430.5_1_11:18421050-18422395:+|nuORF	REV__ENST00000540430.5_1_11:18421050-18422395:+|nuORF	MSMS	A375_MHC_IP_R2	2	615.2462768554688	2	615.335487	1228.65642	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.52	1	101.29	100.79	101.79	0.76278								0	0	0	0.15372	1	38115	38115		8.7454	0.58988	1		+		33702	24698	24589	24762	32814	32814					0.05123890800382469
LSLRRLQDRER	11	Unmodified	_LSLRRLQDRER_					0	0	0			REV__ENST00000285279.9_1_7:55539512-55539692:-|nuORF	REV__ENST00000285279.9_1_7:55539512-55539692:-|nuORF	MSMS	A375_MHC_IP_R1	1	721.3352661132812	2	721.420948	1440.82734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.49	1	142.49	141.99	142.99	0								0	0	0	0.16337	1	54673	54673		1.1933	0	1		+		33703	23337	24590	24763	32815	32815					0.12456221171669313
LSLRRQETW	9	Unmodified	_LSLRRQETW_					0	0	0			REV__ENST00000334527.11_1_17:8371148-8371226:+|nuORF	REV__ENST00000334527.11_1_17:8371148-8371226:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	594.1633911132812	2	594.827829	1187.64111	-0.24765	-0.00014731	2.8311	0.001684	2.5834	0.0015367	595.3310115788787	71.203	0.2055	71.203	71.108	71.313	0					5	3	2	0	0	0	0.78348	1	25900	25900		7.9102	1.187	1	1372400	+		33704	23661	24591	24764	32816	32816					0.054790240031934445
LSLSAQVAQY	10	Unmodified	_LSLSAQVAQY_					0	0	0		nc|ENSG00000174227|Q5H8A4-3|PIGG;nc|ENSG00000174227|Q5H8A4-2|PIGG;ENSG00000174227|ENST00000453061|PIGG;ENST00000507493.1_1_4:514867-515974:+|nuORF	nc|ENSG00000174227|Q5H8A4-3|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-MSMS	A375_MHC_IP_R1	1	540.6788940429688	2	540.290214	1078.56587	-0.67292	-0.00036357	0.091299	4.9328E-05	-0.58162	-0.00031424	540.2902111147883	58.049	1.8295	58.049	57.618	59.448	0					82	35	4	0	0	0	0.69833	1	20701	20701		13.042	0.51092	1	46314000			33705	7863	24592	24765	32817	32817					0.029734217520854145
LSLSEYRRRRQ	11	Unmodified	_LSLSEYRRRRQ_					0	0	0		ENSG00000148840|ENST00000278070|PPRC1;nc|ENSG00000148840|Q5VV67-2|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	MULTI-MSMS	A375_MHC_IP_R2	2	489.010498046875	3	488.611174	1462.81169	-0.5191	-0.00025364	-0.49195	-0.00024037	-1.0111	-0.00049401	488.6106588309769	132.57	1.019	132.76	132.2	133.22	0.18953					56	19	3	0	0	0	0.7328	1	52004	52004		6.2344	0	1	18875000			33706	5768	24593	24766	32818	32818					0.09879934654622957
LSLSKSPAK	9	Unmodified	_LSLSKSPAK_					0	0	0		nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2	nc|ENSG00000187627|P0DJD0|RGPD1	nc|ENSG00000187627|P0DJD0|RGPD1	MULTI-SECPEP	A375_MHC_IP_R1	1	465.66876220703125	2	465.784567	929.554582	-0.52167	-0.00024299	0.07608	3.5437E-05	-0.44559	-0.00020755	465.7844515097936	36.587	0.50653	36.587	36.339	36.845	0					14	9	2	0	0	0	0.65527	1	12295	12295		17.113	0	1	1589400			33707	8657	24594	24767	32819	32819					0.08698644448611503
LSLSLPPKPL	10	Unmodified	_LSLSLPPKPL_					0	0	0		ENST00000382214.7_1_20:388826-389303:+|nuORF	ENST00000382214.7_1_20:388826-389303:+|nuORF	ENST00000382214.7_1_20:388826-389303:+|nuORF	MSMS	A375_MHC_IP_R1	1	355.46002197265625	3	355.561987	1063.66413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.738	1	40.738	40.238	41.238	0								0	0	0	0.15588	1	14020	14020		1.7423	0.67081	1				33708	11384	24595	24768	32820	32820					0.13484650067948678
LSLSMRQRY	9	Unmodified	_LSLSMRQRY_					0	0	0			REV__ENST00000359060.5_1_1:1497385-1497550:-|nuORF	REV__ENST00000359060.5_1_1:1497385-1497550:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	577.1704711914062	2	577.310958	1152.60736	-0.12735	-7.3523E-05	-2.3646	-0.0013651	-2.4919	-0.0014386	577.3092978099936	67.568	0.50934	68.304	68.205	68.715	0.73631					12	9	2	0	0	0	0.60917	1	25570	25570		25.399	4.9848	1	1152600	+		33709	23870	24596	24769	32821	32821					0.037162792397793964
LSLSNKFV	8	Unmodified	_LSLSNKFV_					0	0	0		ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-MSMS	A375_MHC_IP_R1	1	454.6653137207031	2	454.26601	906.517468	-0.26966	-0.0001225	0.031613	1.4361E-05	-0.23805	-0.00010814	454.2659983102402	81.228	2.9403	81.228	80.795	83.736	0					149	57	5	0	0	0	0.71451	1	30029	30029		30.225	1.1432	1	323170000			33710	1799	24597	24770	32822	32822					0.06046972902856851
LSLSNRLD	8	Unmodified	_LSLSNRLD_					0	0	0			REV__ENST00000404372.1_1_6:151256177-151256594:+|nuORF	REV__ENST00000404372.1_1_6:151256177-151256594:+|nuORF	MSMS	A375_MHC_IP_R1	1	459.28887939453125	2	459.256174	916.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.079	1	35.079	34.579	35.579	0								0	0	0	0.16876	1	11635	11635		16.149	0.30192	1		+		33711	18215	24598	24771	32823	32823					0.03620596892096728
LSLSPVSACGP	11	Unmodified	_LSLSPVSACGP_					0	0	0		ENST00000269593.4_1_17:38612915-38613080:+|nuORF	ENST00000269593.4_1_17:38612915-38613080:+|nuORF	ENST00000269593.4_1_17:38612915-38613080:+|nuORF	MSMS	A375_MHC_IP_R1	1	515.689697265625	2	515.765517	1029.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.119	1	68.119	67.619	68.619	0								0	0	0	0.16124	1	24691	24691		12.241	0.60036	1				33712	10371	24599	24772	32824	32824					0.0029039047165042575
LSLSRTPAL	9	Unmodified	_LSLSRTPAL_					0	0	0		ENST00000262455.6_1_9:102822450-102861151:-|nuORF	ENST00000262455.6_1_9:102822450-102861151:-|nuORF	ENST00000262455.6_1_9:102822450-102861151:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	479.6895446777344	2	479.290017	956.565481	-0.82955	-0.00039759	0.090566	4.3407E-05	-0.73898	-0.00035419	479.2900289282617	33.247	0.66118	34	33.789	34.45	0.75225					24	12	3	0	0	0	0.13797	1	11894	11894		43.858	2.0187	1	7716300			33713	10305	24600	24773	32825	32825					0.0854604682289164
LSLSSHMEPV	10	Unmodified	_LSLSSHMEPV_					0	0	0		ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6502685546875	2	550.276249	1098.53795	-0.83565	-0.00045984	-1.8653	-0.0010264	-2.701	-0.0014863	550.275455848987	74.542	0.61127	75.279	75.06	75.671	0.73751					13	11	2	0	0	0	0.78945	1	28228	28228		19.257	10.512	1	1243400			33714	2203	24601	24774	32826	32826					-0.007382244996506415
LSLSSHMEPV	10	Unmodified	_LSLSSHMEPV_					0	0	0		ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	MULTI-MATCH	A375_MHC_IP_R1	1		2	550.276249	1098.53795	-0.53842	-0.00029628	-2.0797	-0.0011444	-2.6181	-0.0014407	550.2751900706471	75.359	0.50434	75.359	75.009	75.514	0	0.040094	-0.00015768	NaN	19.257	10	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	994210			33715	2203	24601	24774							-0.007382244996506415
LSLSTAIHLY	10	Unmodified	_LSLSTAIHLY_					0	0	0		ENST00000306910.8_1_19:58929280-58929493:+|nuORF	ENST00000306910.8_1_19:58929280-58929493:+|nuORF	ENST00000306910.8_1_19:58929280-58929493:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	559.1612548828125	2	559.316232	1116.61791	-0.83814	-0.00046879	1.3763	0.00076981	0.5382	0.00030102	559.3181842703822	97.434	0.30405	98.19	98.077	98.381	0.75587					7	5	2	0	0	0	0.85226	1	37041	37041		20.454	10.38	1	1092000			33716	10584	24602	24775	32827	32827					0.06426585165854704
LSLSVRLTY	9	Unmodified	_LSLSVRLTY_					0	0	0			REV__nc|ENSG00000166471|Q5BJD5-2|TMEM41B	REV__nc|ENSG00000166471|Q5BJD5-2|TMEM41B	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1843872070312	2	526.310949	1050.60735	-0.44983	-0.00023675	-0.78019	-0.00041062	-1.23	-0.00064737	526.3103905201531	78.008	0.71616	78.751	78.416	79.132	0.74293					26	11	3	0	0	0	0.38578	1	29570	29570		27.629	0	1	11689000	+		33717	27338	24603	24776	32828	32828					0.08406602511445271
LSLTDSLFI	9	Unmodified	_LSLTDSLFI_					0	0	0			REV__ENSG00000156920|ENST00000394143|ADGRG4	REV__ENSG00000156920|ENST00000394143|ADGRG4	MULTI-SECPEP	A375_MHC_IP_R2	2	505.1840515136719	2	504.784233	1007.55391	-0.63958	-0.00032285	0.95442	0.00048178	0.31484	0.00015893	504.7842899395276	132.49	0.30806	132.68	132.46	132.76	0.18953					7	5	2	0	0	0	0.43707	1	52151	52151		28.487	5.3384	1	2364500	+		33718	20000	24604	24777	32829	32829					0.05043805008892832
LSLTDSLFI	9	Unmodified	_LSLTDSLFI_					0	0	0			REV__ENSG00000156920|ENST00000394143|ADGRG4	REV__ENSG00000156920|ENST00000394143|ADGRG4	MULTI-MATCH	A375_MHC_IP_R1	1		2	504.784233	1007.55391	-0.62085	-0.00031339	0.50763	0.00025625	-0.11321	-5.7148E-05	504.78445736032984	132.67	0.15279	132.67	132.59	132.74	0	-0.0060281	-8.0746E-06	NaN	28.487	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2544900	+		33719	20000	24604	24777							0.05043805008892832
LSLTIELAVV	10	Unmodified	_LSLTIELAVV_					0	0	0			REV__ENST00000562058.5_1_16:28620169-28631399:-|nuORF	REV__ENST00000562058.5_1_16:28620169-28631399:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	529.7288818359375	2	529.328808	1056.64306	-0.63082	-0.00033391	-0.36404	-0.0001927	-0.99486	-0.00052661	529.328527043348	107.3	0.60834	108.05	107.64	108.25	0.75436					18	11	2	0	0	0	0.57563	1	40536	40536		25.399	0	1	2174800	+		33720	26182	24605	24778	32830	32830					0.11700639968398718
LSLTLVNSSR	10	Unmodified	_LSLTLVNSSR_					0	0	0			REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	545.7164916992188	2	545.316763	1088.61897	-0.80209	-0.0004374	0.07871	4.2922E-05	-0.72338	-0.00039447	545.3166609458929	122.78	3.5444	123.15	121.75	125.3	0.3766					134	69	4	0	0	0	0.70925	1	46723	46723		8.1555	4.559	1	72117000	+		33721	17443	24606	24779	32831	32831					0.07820799534761136
LSLTNKSGGI	10	Unmodified	_LSLTNKSGGI_					0	0	0			REV__OGDHL|p.E185K|1|0.34|ENSG00000197444|chr10:49752174-49752174|C/T|missense_variant	REV__OGDHL|p.E185K|1|0.34|ENSG00000197444|chr10:49752174-49752174|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	495.2091064453125	2	495.284931	988.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.943	1	91.677	91.177	92.177	0.7345								0	0	0	0.14483	1	34601	34601		27.629	4.8925	1		+		33722	27640	24607	24780	32832	32832					0.06057439097673978
LSLTQRGR	8	Unmodified	_LSLTQRGR_					0	0	0		nc|ENSG00000146426|Q8IVF5-4|TIAM2;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2	nc|ENSG00000146426|Q8IVF5-4|TIAM2	nc|ENSG00000146426|Q8IVF5-4|TIAM2	MULTI-MSMS	A375_MHC_IP_R2	2	466.1769714355469	2	465.777608	929.540663	-0.50804	-0.00023663	0.397	0.00018491	-0.11104	-5.1718E-05	465.77771799315013	109.83	1.2246	110.57	110.18	111.41	0.74684					42	23	2	0	0	0	0.77643	2	41399	41399;41603		7.9102	0	1	11479000			33723	5623	24608	24781	32833;32834	32833					0.07307411740180214
LSLTQRGR	8	Unmodified	_LSLTQRGR_					0	0	0		nc|ENSG00000146426|Q8IVF5-4|TIAM2;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2	nc|ENSG00000146426|Q8IVF5-4|TIAM2	nc|ENSG00000146426|Q8IVF5-4|TIAM2	MULTI-MSMS	A375_MHC_IP_R2	2	466.1774597167969	2	465.777608	929.540663	-0.46747	-0.00021774	0.69979	0.00032595	0.23232	0.00010821	465.77766589526306	111.29	2.7072	112.02	110.37	113.08	0.73691					133	52	4	0	0	0	0.77741	1	42005	42005		4.3292	0.38484	1	8671100			33724	5623	24608	24781	32835	32835					0.07307411740180214
LSLTRDKKRC	10	Unmodified	_LSLTRDKKRC_					0	0	0		ENSG00000151320|ENST00000280979|AKAP6	ENSG00000151320|ENST00000280979|AKAP6	ENSG00000151320|ENST00000280979|AKAP6	MULTI-MSMS	A375_MHC_IP_R1	1	407.97064208984375	3	407.236168	1218.68668	-0.26279	-0.00010702	0.0091239	3.7156E-06	-0.25366	-0.0001033	407.2361971360615	39.416	1.1179	39.416	39.033	40.151	0					73	21	5	0	0	0	0.70793	1	13680	13680		5.0475	5.0475	1	152430000			33725	5894	24609	24782	32836	32836					0.08607926193917592
LSLTTSRTPG	10	Unmodified	_LSLTTSRTPG_					0	0	0		ENST00000398868.7_1_11:63410848-63410896:-|nuORF	ENST00000398868.7_1_11:63410848-63410896:-|nuORF	ENST00000398868.7_1_11:63410848-63410896:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1878662109375	2	516.787838	1031.56112	-0.96692	-0.00049969	0.32945	0.00017025	-0.63747	-0.00032944	516.7882468279614	34.858	0.70715	35.621	35.171	35.878	0.76338					18	13	2	0	0	0	0.83355	1	12622	12622		17.113	4.5813	1	3124000			33726	11529	24610	24783	32837	32837					0.04660537609311177
LSLVFGHVVL	10	Unmodified	_LSLVFGHVVL_					0	0	0		ENST00000389301.7_1_16:89804327-89804663:-|nuORF	ENST00000389301.7_1_16:89804327-89804663:-|nuORF	ENST00000389301.7_1_16:89804327-89804663:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	541.867919921875	2	542.331685	1082.64882	-0.35811	-0.00019422	2.1976	0.0011918	1.8395	0.0009976	543.336003652596	107.32	0.46008	107.32	107.19	107.65	0					18	8	4	0	0	0	0.9269	1	39426	39426		3.5965	2.267	1	920750			33727	11397	24611	24784	32838	32838					0.11079783270747612
LSLVFGHVVL	10	Unmodified	_LSLVFGHVVL_					0	0	0		ENST00000389301.7_1_16:89804327-89804663:-|nuORF	ENST00000389301.7_1_16:89804327-89804663:-|nuORF	ENST00000389301.7_1_16:89804327-89804663:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	542.331685	1082.64882	-0.86425	-0.00046871	1.9939	0.0010813	1.1296	0.00061262	542.8344159076744	106.32	0.45847	107.08	106.88	107.34	0.75977	-0.12252	-0.00012296	NaN	3.5965	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	714780			33728	11397	24611	24784							0.11079783270747612
LSLVLNFRKIT	11	Unmodified	_LSLVLNFRKIT_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MSMS	A375_MHC_IP_R1	1	435.2818603515625	3	435.274729	1302.80236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.36	1	141.36	140.86	141.86	0								0	0	0	0.16338	1	54259	54259		1.1098	0.096179	1				33729	4710	24612	24785	32839	32839					0.16306773316409817
LSLVWLLACV	10	Unmodified	_LSLVWLLACV_					0	0	0			REV__ENSG00000172935|ENST00000309099|MRGPRF	REV__ENSG00000172935|ENST00000309099|MRGPRF	MULTI-SECPEP	A375_MHC_IP_R2	2	558.275146484375	2	558.827921	1115.64129	-0.7816	-0.00043678	-2.4464	-0.0013671	-3.228	-0.0018039	558.8287889004564	80.853	0.25701	81.598	81.365	81.622	0.74474					5	4	2	0	0	0	0.89109	1	30634	30634		11.64	2.2929	1	1894400	+		33730	21181	24613	24786	32840	32840					0.08809307678802725
LSLWNKPD	8	Unmodified	_LSLWNKPD_					0	0	0			REV__chr6:34243518-34243616|137|58.82|0.69|6.42|+|1|HMGA1,None|1	REV__chr6:34243518-34243616|137|58.82|0.69|6.42|+|1|HMGA1,None|1	MULTI-SECPEP	A375_MHC_IP_R2	2	486.1529235839844	2	486.761092	971.507631	-0.73956	-0.00035999	-0.11022	-5.3653E-05	-0.84978	-0.00041364	486.76096896165404	70.896	1.9762	71.631	70.895	72.871	0.73421					60	38	2	0	0	0	0.77651	1	27070	27070		26.884	0	1	4048000	+		33731	15766	24614	24787	32841	32841					0.02073784897470432
LSLWPQVRE	9	Unmodified	_LSLWPQVRE_					0	0	0		ENST00000491016.1_1_22:29706398-29706989:+|nuORF	ENST00000491016.1_1_22:29706398-29706989:+|nuORF	ENST00000491016.1_1_22:29706398-29706989:+|nuORF	MSMS	A375_MHC_IP_R1	1	376.9559631347656	3	376.545108	1126.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.606	1	20.606	20.106	21.106	0								0	0	0	0.15486	1	5315	5315		4.897	0	1				33732	12652	24615	24788	32842	32842					0.055251207429591886
LSLWREKK	8	Unmodified	_LSLWREKK_					0	0	0			REV__ENSG00000135249|ENST00000257700|RINT1	REV__ENSG00000135249|ENST00000257700|RINT1	MULTI-SECPEP	A375_MHC_IP_R2	2	353.62896728515625	3	353.881831	1058.62366	-0.51029	-0.00018058	0.23263	8.2322E-05	-0.27766	-9.8259E-05	353.8820142346182	23.554	0.30498	24.184	24.079	24.384	0.63014					7	5	2	0	0	0	0.972	1	7604	7604		6.2058	0.42235	1	1057400	+		33733	18835	24616	24789	32843	32843					0.09669728468179528
LSLYGHGRW	9	Unmodified	_LSLYGHGRW_					0	0	0			REV__ENST00000246117.8_1_19:3208068-3208281:+|nuORF	REV__ENST00000246117.8_1_19:3208068-3208281:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	362.8502502441406	3	363.526047	1087.55631	0.03991	1.4508E-05	2.2017	0.00080037	2.2416	0.00081487	363.52683288691577	19.424	0.35488	19.424	19.268	19.623	0					12	6	2	0	0	0	0.55359	1	4877	4877		7.1017	2.2047	1	1796400	+		33734	23112	24617	24790	32844	32844					0.016036982572359193
LSLYVMHPF	9	Unmodified	_LSLYVMHPF_					0	0	0		ENST00000260585.11_1_2:26569100-26611935:+|nuORF;ENSG00000138018|ENST00000260585|SELENOI	ENST00000260585.11_1_2:26569100-26611935:+|nuORF	ENST00000260585.11_1_2:26569100-26611935:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	553.7031860351562	2	553.788795	1105.56304	-0.89649	-0.00049647	-1.8109	-0.0010028	-2.7073	-0.0014993	554.2879168358797	36.211	0.46027	36.982	36.646	37.106	0.7709					8	5	2	0	0	0	0.48581	1	13185	13185		24.674	5.3119	1	1048100			33735	4943	24618	24791	32845	32845					0.014478750935950302
LSMDEPDP	8	Unmodified	_LSMDEPDP_					0	0	0			REV__nc|ENSG00000100490|Q00532-2|CDKL1	REV__nc|ENSG00000100490|Q00532-2|CDKL1	MULTI-SECPEP	A375_MHC_IP_R1	1	903.7760620117188	1	903.376425	902.369149	-0.17838	-0.00016115	-1.7423	-0.0015739	-1.9206	-0.0017351	903.3752836586101	129	1.1191	129	128.28	129.4	0					31	21	2	0	0	0	0.97144	1	49609	49609		2.3027	0	1	10908000	+		33736	27143	24619	24792	32846	32846					-0.0859412613317545
LSMEEFKKI	9	Unmodified	_LSMEEFKKI_					0	0	0		ENSG00000104490|ENST00000220931|NCALD	ENSG00000104490|ENST00000220931|NCALD	ENSG00000104490|ENST00000220931|NCALD	MULTI-MSMS	A375_MHC_IP_R1	1	375.6045837402344	3	375.538854	1123.59473	0.11222	4.2142E-05	0.4782	0.00017958	0.59042	0.00022173	375.53911258813787	24.117	0.35576	24.117	23.889	24.245	0					9	6	2	0	0	0	0.69317	1	6795	6795		7.609	0.88579	1	6002700			33737	2515	24620	24793	32847	32847					0.03787823056882189
LSMEKIIQV	9	Unmodified	_LSMEKIIQV_					0	0	0		ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	MULTI-SECPEP	A375_MHC_IP_R1	1	531.20556640625	2	530.807185	1059.59982	-0.4267	-0.00022649	-1.3803	-0.0007327	-1.807	-0.00095919	530.8061682394588	92.278	0.66113	92.278	91.956	92.617	0					23	12	3	0	0	0	0.05021	1	33898	33898		78.728	0	1	6439800			33738	1665	24621	24794	32848	32848					0.07240126919487011
LSMEKIIQV	9	Unmodified	_LSMEKIIQV_					0	0	0		ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	MULTI-SECPEP	A375_MHC_IP_R2	2	531.2059936523438	2	530.807185	1059.59982	-0.53744	-0.00028528	2.7734	0.0014721	2.2359	0.0011869	530.8083933315858	91.439	1.064	92.173	91.919	92.983	0.7345					28	20	2	0	0	0	0.10103	1	34778	34778		62.573	14.824	1	5885800			33739	1665	24621	24794	32849	32849					0.07240126919487011
LSMGFTPP	8	Unmodified	_LSMGFTPP_					0	0	0		ENST00000254846.9_1_17:7756835-7757354:+|nuORF	ENST00000254846.9_1_17:7756835-7757354:+|nuORF	ENST00000254846.9_1_17:7756835-7757354:+|nuORF	MSMS	A375_MHC_IP_R2	2	425.1297607421875	2	425.212389	848.410226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.531	1	44.304	43.804	44.804	0.7724								0	0	0	0.16876	1	16220	16220		19.439	3.6708	1				33740	10229	24622	24795	32850	32850					-0.02004320303046825
LSMHRFSASTY	11	Unmodified	_LSMHRFSASTY_					0	0	0			REV__ENSG00000249437|ENST00000517649|NAIP	REV__ENSG00000249437|ENST00000517649|NAIP	MULTI-SECPEP	A375_MHC_IP_R2	2	649.69970703125	2	650.311155	1298.60776	-1.159	-0.00075373	1.6695	0.0010857	0.51043	0.00033194	650.3121923917192	25.986	0.35635	26.646	26.551	26.907	0.65992					8	6	2	0	0	0	0.88813	1	8753	8753		19.362	0	1	3022400	+		33741	22836	24623	24796	32851	32851					-0.029603458310248243
LSMHVRTDSMN	11	Unmodified	_LSMHVRTDSMN_					0	0	0			REV__ENSG00000142233|ENST00000270235|NTN5	REV__ENSG00000142233|ENST00000270235|NTN5	MSMS	A375_MHC_IP_R1	1	645.978759765625	2	645.800097	1289.58564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.99	1	108.99	108.49	109.49	0								0	0	0	0.16138	1	39980	39980		11.495	0.67078	1		+		33742	19302	24624	24797	32852	32852					-0.04756893571106957
LSMIFEHIE	9	Unmodified	_LSMIFEHIE_					0	0	0			REV__tr|U7SUJ0|U7SUJ0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01184PE=4SV=1	REV__tr|U7SUJ0|U7SUJ0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01184PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	373.5889587402344	3	373.523204	1117.54778	0.225	8.4043E-05	0.51404	0.000192	0.73904	0.00027605	373.5233772851136	33.075	0.50572	33.075	32.785	33.291	0					12	9	2	0	0	0	0.75466	1	10823	10823		8.1555	8.1555	1	4952300	+		33743	28562	24625	24798	32853	32853					-0.006290364942742599
LSMILLGHSL	10	Unmodified	_LSMILLGHSL_					0	0	0		ABHD4|p.P138L|1|0.58|ENSG00000100439|chr14:22603690-22603690|C/T|missense_variant	ABHD4|p.P138L|1|0.58|ENSG00000100439|chr14:22603690-22603690|C/T|missense_variant	ABHD4|p.P138L|1|0.58|ENSG00000100439|chr14:22603690-22603690|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	362.6058654785156	3	361.87921	1082.6158	0.48404	0.00017516	-2.1593	-0.00078142	-1.6753	-0.00060626	361.87786527323914	49.562	0.76352	49.562	49.235	49.998	0					32	14	3	0	0	0	0.85226	1	17635	17635		3.3196	2.5431	1	3595200			33744	19	24626	24799	32854	32854					0.07779833156405402
LSMMAYDRF	9	Unmodified	_LSMMAYDRF_					0	0	0		ENSG00000179919|ENST00000326258|OR10A7	ENSG00000179919|ENST00000326258|OR10A7	ENSG00000179919|ENST00000326258|OR10A7	MULTI-SECPEP	A375_MHC_IP_R1	1	566.697021484375	2	567.259545	1132.50454	-0.33517	-0.00019013	0.30312	0.00017195	-0.032052	-1.8182E-05	567.2596419806453	77.639	0.66033	77.639	77.286	77.946	0					37	12	4	0	0	0	0.74412	1	28230	28230		14.838	0	1	13719000			33745	8265	24627	24800	32855	32855					-0.05641549543202018
LSMMDAIPTL	10	Unmodified	_LSMMDAIPTL_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	A375_MHC_IP_R2	2	545.681640625	2	546.277403	1090.54025	-1.0673	-0.00058306	-1.4066	-0.00076838	-2.4739	-0.0013514	546.7787168520794	61.837	0.35258	62.58	62.471	62.824	0.74263					10	6	2	0	0	0	0.87163	1	23426	23426		5.7319	0	1	1074200			33746	1157	24628	24801	32856	32856					-0.0013951208620710531
LSMNLYELI	9	Unmodified	_LSMNLYELI_					0	0	0		nc|ENSG00000127334|Q92630-2|DYRK2;ENSG00000127334|ENST00000344096|DYRK2	nc|ENSG00000127334|Q92630-2|DYRK2	nc|ENSG00000127334|Q92630-2|DYRK2	MULTI-SECPEP	A375_MHC_IP_R1	1	548.6913452148438	2	548.291368	1094.56818	-0.48364	-0.00026518	1.8573	0.0010183	1.3736	0.00075316	548.2923829409837	101.36	1.6695	101.36	100.63	102.3	0					60	32	3	0	0	0	0.62767	1	37275	37275		23.148	6.2061	1	17142000			33747	4084	24629	24802	32857	32857					0.02468134165542324
LSMRIWHYRFC	11	Unmodified	_LSMRIWHYRFC_					0	0	0			REV__ENST00000373344.9_1_X:76762287-76762440:-|nuORF	REV__ENST00000373344.9_1_X:76762287-76762440:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	504.66107177734375	3	504.584803	1510.73258	-0.6131	-0.00030936	0.74213	0.00037447	0.12903	6.5109E-05	504.58510339142015	42.781	0.50665	43.553	43.268	43.775	0.7724					21	9	3	0	0	0	0.7359	1	16010	16010		1.3296	0.21989	1	4820400	+		33748	24092	24630	24803	32858	32858					-0.002357518955022897
LSMSPFQDPAL	11	Unmodified	_LSMSPFQDPAL_					0	0	0			REV__ENST00000470306.5_1_1:156126086-156128580:+|nuORF	REV__ENST00000470306.5_1_1:156126086-156128580:+|nuORF	MSMS	A375_MHC_IP_R1	1	603.1942749023438	2	603.297181	1204.57981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.69	1	49.69	49.19	50.19	0								0	0	0	0.15837	1	17579	17579		15.248	0.8431	1		+		33749	25102	24631	24804	32859	32859					-0.01429668811101692
LSMTKKRKGIK	11	Unmodified	_LSMTKKRKGIK_					0	0	0		ENST00000592120.5_2_16:4903156-4908042:+|nuORF	ENST00000592120.5_2_16:4903156-4908042:+|nuORF	ENST00000592120.5_2_16:4903156-4908042:+|nuORF	MSMS	A375_MHC_IP_R2	2	645.46923828125	2	645.407932	1288.80131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.277	1	78.02	77.52	78.52	0.74293								0	0	0	0.16307	1	29345	29345		2.7352	0	1				33750	13809	24632	24805	32860	32860					0.1684623567584822
LSMVEEGNPHH	11	Unmodified	_LSMVEEGNPHH_					0	0	0		nc|ENSG00000147679|Q9BRU9-2|UTP23;ENST00000519443.1_1_8:117778842-117782740:+|nuORF;ENSG00000147679|ENST00000309822|UTP23	nc|ENSG00000147679|Q9BRU9-2|UTP23	nc|ENSG00000147679|Q9BRU9-2|UTP23	MULTI-MSMS	A375_MHC_IP_R2	2	417.5923767089844	3	417.192517	1248.55572	-0.2566	-0.00010705	-0.090823	-3.7891E-05	-0.34743	-0.00014494	417.19254628175327	35.02	0.40373	35.783	35.525	35.929	0.76338					15	7	3	0	0	0	0.72565	1	12678	12678		7.0371	1.1689	1	2243400			33751	5700	24633	24806	32861	32861					-0.058615092447780626
LSNDECKRI	9	Unmodified	_LSNDECKRI_					0	0	0		ENST00000548316.1_1_12:41903559-41967689:+|nuORF;nc|ENSG00000165966|Q6ZMN7-4|PDZRN4;nc|ENSG00000165966|Q6ZMN7-2|PDZRN4;ENSG00000165966|ENST00000402685|PDZRN4	ENST00000548316.1_1_12:41903559-41967689:+|nuORF	ENST00000548316.1_1_12:41903559-41967689:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	359.9288330078125	3	359.850091	1076.52844	-0.54513	-0.00019616	-3.6796	-0.0013241	-4.2247	-0.0015203	360.1830233695746	24.57	0.25446	25.214	25.06	25.314	0.64368					6	4	2	0	0	0	0.71071	1	8117	8117		14.405	0	1	2019600			33752	7010	24634	24807	32862	32862					-0.006759927851589964
LSNDSKSSF	9	Unmodified	_LSNDSKSSF_					0	0	0			REV__ABCG8|p.E31K|1|0.52|ENSG00000143921|chr2:43844534-43844534|G/A|missense_variant	REV__ABCG8|p.E31K|1|0.52|ENSG00000143921|chr2:43844534-43844534|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	492.4509582519531	2	492.735271	983.45599	-0.52096	-0.00025669	0.48028	0.00023665	-0.040676	-2.0042E-05	492.73538033891055	32.133	0.30553	32.87	32.654	32.96	0.73691					8	5	2	0	0	0	0.67483	1	11364	11364		14.838	0	1	1375200	+		33753	15290	24635	24808	32863	32863					-0.0364000358707699
LSNELKWV	8	Unmodified	_LSNELKWV_					0	0	0			REV__ENSG00000131686|ENST00000377443|CA6	REV__ENSG00000131686|ENST00000377443|CA6	MULTI-SECPEP	A375_MHC_IP_R2	2	494.11383056640625	2	494.776742	987.538931	-0.70062	-0.00034665	-0.053323	-2.6383E-05	-0.75394	-0.00037303	494.77653120660153	35.554	0.4054	36.317	36.081	36.486	0.76338					13	7	2	0	0	0	0.84294	1	12845	12845		18.146	3.3081	1	2103800	+		33754	18616	24636	24809	32864	32864					0.0446635793156247
LSNERYTVL	9	Unmodified	_LSNERYTVL_					0	0	0			REV__ENSG00000166825|ENST00000300060|ANPEP	REV__ENSG00000166825|ENST00000300060|ANPEP	MULTI-SECPEP	A375_MHC_IP_R2	2	548.1953735351562	2	547.795663	1093.57677	-1.37	-0.00075051	0.49826	0.00027294	-0.87179	-0.00047756	547.7960040599473	53.35	0.5114	54.101	53.842	54.353	0.75105					22	9	3	0	0	0	0.50484	1	20133	20133		34.932	25.549	1	5733600	+		33755	20704	24637	24810	32865	32865					0.03372824126358864
LSNESVSRVP	10	Unmodified	_LSNESVSRVP_					0	0	0			REV__ENST00000482397.1_1_7:50672830-50674105:-|nuORF	REV__ENST00000482397.1_1_7:50672830-50674105:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	544.68994140625	2	544.290745	1086.56694	-1.1167	-0.00060779	-0.11927	-6.492E-05	-1.2359	-0.0006727	544.2906154675447	19.764	0.70811	20.374	20.044	20.752	0.61029					23	13	2	0	0	0	0.63639	1	6178	6178		18.146	2.8979	1	8553100	+		33756	17429	24638	24811	32866	32866					0.027116361209891693
LSNFDELYL	9	Unmodified	_LSNFDELYL_					0	0	0			REV__tr|U7SJA1|U7SJA1_FUSNUXyloseisomerase-likeTIMbarreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02159PE=4SV=1	REV__tr|U7SJA1|U7SJA1_FUSNUXyloseisomerase-likeTIMbarreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02159PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	556.6885986328125	2	557.276772	1112.53899	-0.68657	-0.00038261	-1.1971	-0.00066709	-1.8836	-0.0010497	557.2763362734796	86.801	0.25316	86.801	86.679	86.933	0					6	4	2	0	0	0	0.73363	1	31801	31801		15.847	5.0233	1	488490	+		33757	28229	24639	24812	32867	32867					-0.012776868591117818
LSNFERII	8	Unmodified	_LSNFERII_					0	0	0			REV__tr|U7SVL2|U7SVL2_FUSNUDNApolymeraseIVOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dinBPE=3SV=1	REV__tr|U7SVL2|U7SVL2_FUSNUDNApolymeraseIVOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dinBPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	496.1900939941406	2	496.282192	990.549831	-0.24363	-0.00012091	-0.4537	-0.00022516	-0.69733	-0.00034607	496.28190894256915	43.376	0.35622	43.376	43.146	43.502	0					10	6	2	0	0	0	0.84748	1	15098	15098		36.044	7.5574	1	3118800	+		33758	28595	24640	24813	32868	32868					0.054177603058633395
LSNFHTVFL	9	Unmodified	_LSNFHTVFL_					0	0	0			REV__nc|ENSG00000122966|O14578|CIT	REV__nc|ENSG00000122966|O14578|CIT	MULTI-SECPEP	A375_MHC_IP_R1	1	359.95721435546875	3	359.862437	1076.56548	0.12866	4.63E-05	-0.15907	-5.7244E-05	-0.030412	-1.0944E-05	360.1967094477278	55.344	0.25408	55.344	55.228	55.482	0					6	4	2	0	0	0	0.78348	1	19753	19753		4.897	0	1	1486200	+		33759	18225	24641	24814	32869	32869					0.030260468229016624
LSNFRFFV	8	Unmodified	_LSNFRFFV_					0	0	0			REV__nc|ENSG00000162600|Q96E52-2|OMA1	REV__nc|ENSG00000162600|Q96E52-2|OMA1	MULTI-SECPEP	A375_MHC_IP_R1	1	515.130859375	2	515.279452	1028.54435	-0.22051	-0.00011362	0.60733	0.00031294	0.38682	0.00019932	515.2796473694981	112.36	0.35806	112.36	112.18	112.53	0					9	6	2	0	0	0	0.84294	1	41170	41170		24.021	0	1	639220	+		33760	20271	24642	24815	32870	32870					0.03122081514038655
LSNGERGDNK	10	Unmodified	_LSNGERGDNK_					0	0	0		ENST00000414406.2_1_12:20095430-20095949:+|nuORF	ENST00000414406.2_1_12:20095430-20095949:+|nuORF	ENST00000414406.2_1_12:20095430-20095949:+|nuORF	MSMS	A375_MHC_IP_R2	2	545.1845703125	2	545.267801	1088.52105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.41	1	103.17	102.67	103.67	0.76428								0	0	0	0.15038	1	38803	38803		17.113	1.2657	1				33761	11667	24643	24816	32871	32871					-0.019670090612407876
LSNGLLGVV	9	Unmodified	_LSNGLLGVV_					0	0	0			REV__ENSG00000278195|ENST00000610913|SSTR3	REV__ENSG00000278195|ENST00000610913|SSTR3	MULTI-SECPEP	A375_MHC_IP_R1	1	435.64678955078125	2	436.26601	870.517468	-0.33078	-0.00014431	0.043665	1.905E-05	-0.28712	-0.00012526	436.2660003140319	52.822	0.70887	52.822	52.541	53.25	0					18	13	2	0	0	0	0.74169	1	18909	18909		16.149	8.8599	1	1499100	+		33762	22976	24644	24817	32872	32872					0.07702972902859528
LSNGTDASTF	10	Unmodified	_LSNGTDASTF_					0	0	0			REV__nc|ENSG00000138286|Q96BN6-2|FAM149B1	REV__nc|ENSG00000138286|Q96BN6-2|FAM149B1	MULTI-MSMS	A375_MHC_IP_R1	1	506.6788635253906	2	506.732729	1011.4509	-0.45041	-0.00022824	-1.163	-0.00058932	-1.6134	-0.00081756	507.23326712434977	87.39	0.30547	87.39	87.186	87.491	0					7	5	2	0	0	0	0.6806	1	32036	32036		14.838	0.25658	1	967370	+		33763	19081	24645	24818	32873	32873					-0.0543630744971324
LSNHLGPLRV	10	Unmodified	_LSNHLGPLRV_					0	0	0			REV__ENSG00000110799|ENST00000261405|VWF	REV__ENSG00000110799|ENST00000261405|VWF	MULTI-SECPEP	A375_MHC_IP_R1	1	369.4447326660156	3	369.220735	1104.64038	0.14469	5.3424E-05	-0.77137	-0.00028481	-0.62668	-0.00023138	369.55476315274024	25.674	0.35538	25.674	25.511	25.866	0					9	6	2	0	0	0	0.94707	1	7458	7458		0.56317	0.32733	1	1229300	+		33764	17641	24646	24819	32874	32874					0.09224229354140334
LSNIERLKLEV	11	Unmodified	_LSNIERLKLEV_					0	0	0		ENST00000600677.5_1_19:6744980-6751219:+|nuORF;nc|ENSG00000125733|Q15642-4|TRIP10;ENST00000595305.5_1_19:6739772-6750443:+|nuORF;nc|ENSG00000125733|Q15642-2|TRIP10;nc|ENSG00000125733|Q15642-3|TRIP10;ENSG00000125733|ENST00000313244|TRIP10	ENST00000600677.5_1_19:6744980-6751219:+|nuORF	ENST00000600677.5_1_19:6744980-6751219:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	656.7327270507812	2	657.393002	1312.77145	-0.40299	-0.00026492	-1.0119	-0.00066524	-1.4149	-0.00093016	657.3921594363842	54.672	0.25381	54.672	54.467	54.72	0					7	4	2	0	0	0	0.99507	1	19528	19528		4.5289	0	1	1219900			33765	3982	24647	24820	32875	32875					0.12757575211480798
LSNKEGEYV	9	Unmodified	_LSNKEGEYV_					0	0	0			REV__ENSG00000183090|ENST00000329798|FREM3	REV__ENSG00000183090|ENST00000329798|FREM3	MULTI-SECPEP	A375_MHC_IP_R2	2	520.1583251953125	2	519.758746	1037.50294	-0.69997	-0.00036382	0.28825	0.00014982	-0.41172	-0.000214	519.7586796281197	31.128	0.50909	31.846	31.618	32.128	0.71857					25	9	3	0	0	0	0.4465	1	10963	10963		19.362	3.2128	1	12429000	+		33766	21735	24648	24821	32876	32876					-0.014311440359733751
LSNKFLNNK	9	Unmodified	_LSNKFLNNK_					0	0	0			REV__ENST00000519583.5_1_5:178044267-178044471:-|nuORF	REV__ENST00000519583.5_1_5:178044267-178044471:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	539.7056884765625	2	539.306198	1076.59784	-0.62554	-0.00033736	-0.28608	-0.00015429	-0.91163	-0.00049165	539.3061193810895	44.065	0.45936	44.065	43.808	44.267	0					14	8	3	0	0	0	0.61452	1	15381	15381		26.268	0	1	2147700	+		33767	25687	24649	24822	32877	32877					0.06260834225872713
LSNKKTERE	9	Unmodified	_LSNKKTERE_					0	0	0			REV__ARHGAP29|p.Q777R|1|0.27|ENSG00000137962|chr1:94179875-94179875|T/C|missense_variant	REV__ARHGAP29|p.Q777R|1|0.27|ENSG00000137962|chr1:94179875-94179875|T/C|missense_variant	MSMS	A375_MHC_IP_R1	1	552.6580810546875	2	552.80402	1103.59349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.63	1	85.63	85.13	86.13	0								0	0	0	0.15411	1	31385	31385		14.838	0.43289	1		+		33768	15434	24650	24823	32878	32878					0.04583325012345085
LSNLDIQV	8	Unmodified	_LSNLDIQV_					0	0	0			REV__ENSG00000169330|ENST00000305428|MINAR1	REV__ENSG00000169330|ENST00000305428|MINAR1	MSMS	A375_MHC_IP_R1	1	451.1503601074219	2	451.2531	900.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.463	1	85.463	84.963	85.963	0								0	0	0	0.16876	1	31321	31321		14.582	0	1		+		33769	20924	24651	24824	32879	32879					0.037420786605594
LSNLIDIFV	9	Unmodified	_LSNLIDIFV_					0	0	0		ENSG00000156502|ENST00000359655|SUPV3L1	ENSG00000156502|ENST00000359655|SUPV3L1	ENSG00000156502|ENST00000359655|SUPV3L1	MULTI-MSMS	A375_MHC_IP_R2	2	517.5587158203125	2	517.30005	1032.58555	-0.74208	-0.00038388	-0.13794	-7.1357E-05	-0.88002	-0.00045523	517.3001562103275	77.855	0.56259	78.598	78.315	78.878	0.74293					31	10	4	0	0	0	0.033557	1	29504	29504		71.922	3.8416	1	13759000			33770	6195	24652	24825	32880	32880					0.07055797762859584
LSNLNTEVL	9	Unmodified	_LSNLNTEVL_					0	0	0		ENST00000440859.7_1_7:107384347-107384455:+|nuORF	ENST00000440859.7_1_7:107384347-107384455:+|nuORF	ENST00000440859.7_1_7:107384347-107384455:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.17657470703125	2	501.776939	1001.53933	-0.31243	-0.00015677	-0.079727	-4.0005E-05	-0.39216	-0.00019678	501.77679667844654	39.311	0.60985	39.311	39.033	39.643	0					18	11	3	0	0	0	0.4465	1	13485	13485		31.268	5.0002	1	1958700			33771	11975	24653	24826	32881	32881					0.038617328607642776
LSNLQQGAGSL	11	Unmodified	_LSNLQQGAGSL_					0	0	0		THBS4|p.R136Q|1|0.36|ENSG00000113296|chr5:80055899-80055899|G/A|missense_variant	THBS4|p.R136Q|1|0.36|ENSG00000113296|chr5:80055899-80055899|G/A|missense_variant	THBS4|p.R136Q|1|0.36|ENSG00000113296|chr5:80055899-80055899|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	544.187744140625	2	544.290745	1086.56694	-0.34443	-0.00018747	-0.47475	-0.0002584	-0.81918	-0.00044587	544.2904661668166	21.224	0.86251	21.224	20.946	21.808	0					29	16	2	0	0	0	0.72494	1	5722	5722		13.615	0.74226	1	23385000			33772	29336	24654	24827	32882	32882					0.027116361210119067
LSNLSLEGIAV	11	Unmodified	_LSNLSLEGIAV_					0	0	0		ENSG00000065357|ENST00000331886|DGKA;ENST00000551739.5_1_12:56346469-56347287:+|nuORF;ENST00000552478.5_1_12:56346125-56347287:+|nuORF	ENSG00000065357|ENST00000331886|DGKA	ENSG00000065357|ENST00000331886|DGKA	MULTI-SECPEP	A375_MHC_IP_R1	1	557.7294921875	2	558.318971	1114.62339	-0.43595	-0.0002434	0.093142	5.2003E-05	-0.3428	-0.00019139	558.31875402871	70.857	0.40967	70.857	70.698	71.108	0					14	7	3	0	0	0	0.68458	1	25723	25723		35.612	2.8266	1	1357700			33773	1378	24655	24828	32883	32883					0.0706626395767671
LSNMSMDFQNH	11	Unmodified	_LSNMSMDFQNH_					0	0	0		ENSG00000146648|ENST00000275493|EGFR;nc|ENSG00000146648|P00533-2|EGFR;nc|ENSG00000146648|P00533-4|EGFR;nc|ENSG00000146648|P00533-3|EGFR	ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	MSMS	A375_MHC_IP_R1	1	662.443603515625	2	662.276454	1322.53836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.35	1	121.35	120.85	121.85	0								0	0	0	0.16203	1	45058	45058		8.1555	1.9497	1				33774	5630	24656	24829	32884	32884					-0.11001172842088636
LSNNPGLLELW	11	Unmodified	_LSNNPGLLELW_					0	0	0			REV__ENSG00000112981|ENST00000265191|NME5	REV__ENSG00000112981|ENST00000265191|NME5	MULTI-SECPEP	A375_MHC_IP_R2	2	628.7371826171875	2	628.337695	1254.66084	-0.78331	-0.00049219	0.27535	0.00017301	-0.50796	-0.00031917	628.3376664764753	105.25	0.61014	106.02	105.67	106.28	0.76308					27	11	3	0	0	0	0.46316	1	39809	39809		43.982	4.0321	1	5962400	+		33775	17762	24657	24830	32885	32885					0.04369355223275306
LSNNPGLLELW	11	Unmodified	_LSNNPGLLELW_					0	0	0			REV__ENSG00000112981|ENST00000265191|NME5	REV__ENSG00000112981|ENST00000265191|NME5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	628.337695	1254.66084	-0.45111	-0.00028345	0.12615	7.9263E-05	-0.32496	-0.00020419	628.3378868845251	106.09	0.6654	106.09	105.81	106.47	0	0.035006	-6.7176E-05	NaN	43.982	32	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7855000	+		33776	17762	24657	24830							0.04369355223275306
LSNPLPVPRL	10	Unmodified	_LSNPLPVPRL_					0	0	0		ENST00000460939.5_1_11:62369776-62370417:-|nuORF;nc|ENSG00000149499|Q32P44-2|EML3	ENST00000460939.5_1_11:62369776-62370417:-|nuORF	ENST00000460939.5_1_11:62369776-62370417:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	368.9266662597656	3	369.229119	1104.66553	-0.099461	-3.6724E-05	-3.1666	-0.0011692	-3.266	-0.0012059	369.227737394427	24.796	1.323	25.439	24.705	26.028	0.64368					42	25	3	0	0	0	0.70496	1	8166	8166		5.7834	1.2546	1	13877000			33777	12177	24658	24831	32886	32886					0.11738284156695045
LSNPSEVEVL	10	Unmodified	_LSNPSEVEVL_					0	0	0		ENST00000483821.1_1_6:33162461-33163032:-|nuORF;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB	ENST00000483821.1_1_6:33162461-33163032:-|nuORF	ENST00000483821.1_1_6:33162461-33163032:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	362.5733947753906	3	362.860761	1085.56045	0.45457	0.00016495	0.29199	0.00010595	0.74657	0.0002709	362.860829286991	21.632	0.61015	21.632	21.301	21.911	0					30	11	4	0	0	0	0.6774	1	5744	5744		23.801	8.8439	1	14477000			33778	9417	24659	24832	32887	32887					0.021096981696246075
LSNPSPFQTL	10	Unmodified	_LSNPSPFQTL_					0	0	0		ENSG00000118496|ENST00000237281|FBXO30	ENSG00000118496|ENST00000237281|FBXO30	ENSG00000118496|ENST00000237281|FBXO30	MULTI-MSMS	A375_MHC_IP_R1	1	368.927001953125	3	368.529235	1102.56587	0.1565	5.7674E-05	-1.6416	-0.00060496	-1.4851	-0.00054729	368.5282941210772	25.472	1.067	25.472	25.255	26.322	0					38	20	4	0	0	0	0.71455	1	7427	7427		5.7834	0	1	4953100			33779	3544	24660	24833	32888	32888					0.018694217520987877
LSNQLVPDL	9	Unmodified	_LSNQLVPDL_					0	0	0			REV__BNC2|p.P553S|1|0.25|ENSG00000173068|chr9:16436537-16436537|G/A|missense_variant	REV__BNC2|p.P553S|1|0.25|ENSG00000173068|chr9:16436537-16436537|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	500.1791687011719	2	499.779482	997.544411	-0.61801	-0.00030887	-0.38804	-0.00019394	-1.0061	-0.0005028	500.28042812861526	131.91	0.25203	131.91	131.78	132.03	0					10	4	3	0	0	0	0.35581	1	50876	50876		26.884	5.137	1	5508500	+		33780	15518	24661	24834	32889	32889					0.04554036723357058
LSNQLVPDL	9	Unmodified	_LSNQLVPDL_					0	0	0			REV__BNC2|p.P553S|1|0.25|ENSG00000173068|chr9:16436537-16436537|G/A|missense_variant	REV__BNC2|p.P553S|1|0.25|ENSG00000173068|chr9:16436537-16436537|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	499.779482	997.544411	-0.61801	-0.00030887	-0.38804	-0.00019394	-1.0061	-0.0005028	500.28042812861526	131.91	0.25203	131.91	131.78	132.03	0	0.016714	0.00013134	NaN	26.884	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5508500	+		33781	15518	24661	24834							0.04554036723357058
LSNQLVPDL	9	Unmodified	_LSNQLVPDL_					0	0	0			REV__BNC2|p.P553S|1|0.25|ENSG00000173068|chr9:16436537-16436537|G/A|missense_variant	REV__BNC2|p.P553S|1|0.25|ENSG00000173068|chr9:16436537-16436537|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	499.779482	997.544411	-0.53354	-0.00026665	-1.4272	-0.0007133	-1.9608	-0.00097995	499.77912864976764	131.68	0.2028	131.87	131.75	131.95	0.18953	-0.016714	-0.00090739	NaN	26.884	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4943100	+		33782	15518	24661	24834							0.04554036723357058
LSNQVLVN	8	Unmodified	_LSNQVLVN_					0	0	0			REV__ENSG00000142102|ENST00000409548|PGGHG	REV__ENSG00000142102|ENST00000409548|PGGHG	MULTI-MSMS	A375_MHC_IP_R2	2	443.6793518066406	2	443.753267	885.491981	-0.30547	-0.00013555	0.20875	9.2633E-05	-0.096725	-4.2922E-05	443.7533409805887	67.8	0.56092	68.535	68.255	68.816	0.73511					16	10	2	0	0	0	0.73111	1	25786	25786		25.399	0	1	3166300	+		33783	19293	24662	24835	32890	32890					0.04465498380432109
LSNRNQAGK	9	Unmodified	_LSNRNQAGK_					0	0	0		ENSG00000008086|ENST00000623535|CDKL5;nc|ENSG00000008086|O76039-1|CDKL5	ENSG00000008086|ENST00000623535|CDKL5	ENSG00000008086|ENST00000623535|CDKL5	MSMS	A375_MHC_IP_R2	2	494.3117980957031	2	494.270147	986.525741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.335	1	88.068	87.568	88.568	0.733								0	0	0	0.15411	1	33213	33213		14.838	0.93222	1				33784	951	24663	24836	32891	32891					0.0319391987218296
LSNSKRCRKK	10	Unmodified	_LSNSKRCRKK_					0	0	0			REV__ENSG00000198924|ENST00000361384|DCLRE1A	REV__ENSG00000198924|ENST00000361384|DCLRE1A	MULTI-SECPEP	A375_MHC_IP_R2	2	407.3131408691406	3	407.239913	1218.69791	-0.26602	-0.00010834	0.25853	0.00010528	-0.0074957	-3.0525E-06	407.24001650848163	24.238	0.30462	24.882	24.705	25.009	0.64368					8	5	2	0	0	0	0.92445	1	7913	7913		4.4062	0	1	2621600	+		33785	22449	24664	24837	32892	32892					0.09730748288029645
LSNVWTVEY	9	Unmodified	_LSNVWTVEY_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MSMS	A375_MHC_IP_R2	2	555.7078247070312	2	555.776939	1109.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.471	1	79.215	78.715	79.715	0.74474								0	0	0	0.15069	1	29799	29799		20.454	2.3073	1				33786	14846;9178	24665	24838	32893	32893					-0.01106267139243755
LSNYHCKLLS	10	Unmodified	_LSNYHCKLLS_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-SECPEP	A375_MHC_IP_R1	1	393.6072998046875	3	393.205986	1176.59613	0.32004	0.00012584	-3.718	-0.0014619	-3.3979	-0.0013361	393.5378948915445	21.477	0.86454	21.477	21.148	22.013	0					35	16	4	0	0	0	0.9267	1	5721	5721		6.6235	0	1	3361300			33787	7930	24666	24839	32894	32894					0.014894571456352423
LSNYKDNI	8	Unmodified	_LSNYKDNI_					0	0	0		ENSG00000143971|ENST00000272342|ETAA1;ETAA1|p.L456*|1|0.37|ENSG00000143971|chr2:67404048-67404048|T/-|frameshift_variant	ENSG00000143971|ENST00000272342|ETAA1	ENSG00000143971|ENST00000272342|ETAA1	MULTI-SECPEP	A375_MHC_IP_R1	1	483.64715576171875	2	483.748182	965.481811	-0.51586	-0.00024955	1.4429	0.00069801	0.92706	0.00044846	483.74864306351725	85.247	0.55959	85.247	85.107	85.667	0					12	10	2	0	0	0	0.93416	1	31326	31326		5.2307	0	1	959170			33788	5453	24667	24840	32895	32895					-0.002311093448156498
LSNYLEQNK	9	Unmodified	_LSNYLEQNK_					0	0	0			REV__tr|U7T519|U7T519_FUSNUMethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00275PE=3SV=1	REV__tr|U7T519|U7T519_FUSNUMethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00275PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	554.1893920898438	2	554.785296	1107.55604	-1.3022	-0.00072245	-0.22787	-0.00012642	-1.5301	-0.00084887	554.7856354005596	52.884	0.5079	53.635	53.385	53.893	0.75105					23	9	3	0	0	0	0.63327	1	19855	19855		8.7454	8.7454	1	2718900	+		33789	28814	24668	24841	32896	32896					0.006562337466903045
LSNYQFLFQDL	11	Unmodified	_LSNYQFLFQDL_					0	0	0		ENSG00000127249|ENST00000342695|ATP13A4	ENSG00000127249|ENST00000342695|ATP13A4	ENSG00000127249|ENST00000342695|ATP13A4	MULTI-SECPEP	A375_MHC_IP_R1	1	464.00762939453125	3	463.234599	1386.68197	0.064639	2.9943E-05	-0.41632	-0.00019285	-0.35168	-0.00016291	463.2343916197104	21.811	0.30604	21.811	21.656	21.962	0					6	5	2	0	0	0	1.0005	1	5729	5729		1.1098	0.18422	1	483210			33790	4081	24669	24842	32897	32897					0.004093205321396454
LSPAALPTPV	10	Unmodified	_LSPAALPTPV_					0	0	0			REV__nc|ENSG00000118156|Q9H0D2-2|ZNF541	REV__nc|ENSG00000118156|Q9H0D2-2|ZNF541	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6498718261719	2	483.286943	964.559333	-0.62328	-0.00030122	0.20612	9.9617E-05	-0.41716	-0.00020161	483.28709052795546	82.004	0.91383	82.747	82.533	83.447	0.74293					24	17	2	0	0	0	0.64716	1	31358	31358		22.736	0	1	983940	+		33791	18032	24670	24843	32898	32898					0.07563528591367685
LSPAALSLLL	10	Unmodified	_LSPAALSLLL_					0	0	0		ARHGEF35|p.P451L|1|0.19|ENSG00000213214|chr7:144187032-144187032|G/A|missense_variant	ARHGEF35|p.P451L|1|0.19|ENSG00000213214|chr7:144187032-144187032|G/A|missense_variant	ARHGEF35|p.P451L|1|0.19|ENSG00000213214|chr7:144187032-144187032|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	499.1824951171875	2	499.318243	996.621933	-0.62729	-0.00031321	0.26047	0.00013006	-0.36681	-0.00018316	499.3182257719882	132.56	0.15315	132.56	132.44	132.59	0					4	2	2	0	0	0	0.12314	1	51090	51090		58.679	3.9053	1	2462400			33792	176	24671	24844	32899	32899					0.12348674659574499
LSPAALSLLL	10	Unmodified	_LSPAALSLLL_					0	0	0		ARHGEF35|p.P451L|1|0.19|ENSG00000213214|chr7:144187032-144187032|G/A|missense_variant	ARHGEF35|p.P451L|1|0.19|ENSG00000213214|chr7:144187032-144187032|G/A|missense_variant	ARHGEF35|p.P451L|1|0.19|ENSG00000213214|chr7:144187032-144187032|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	499.318243	996.621933	-0.50128	-0.0002503	-0.53076	-0.00026502	-1.032	-0.00051532	499.3179796412728	132.34	0.15457	132.53	132.4	132.56	0.18953	-0.0147	-0.00022275	NaN	58.679	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2481100			33793	176	24671	24844							0.12348674659574499
LSPACAEVVW	10	Unmodified	_LSPACAEVVW_					0	0	0		nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.R4794Afs*50|1|0.26|ENSG00000154358|chr1:228319130-228319130|C/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.C2753Afs*104|1|0.16|ENSG00000154358|chr1:228281992-228282004|TGCAGCTTTGAGT/-|frameshift_variant;OBSCN|p.V3655Wfs*18|1|0.18|ENSG00000154358|chr1:228293443-228293443|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9-3|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	MSMS	A375_MHC_IP_R2	2	537.7188110351562	2	537.76806	1073.52157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.871	1	33.608	33.108	34.108	0.73692								0	0	0	0.15158	1	11735	11735		14.838	1.3304	1				33794	14690	24672	24845	32900	32900					-0.01225305665752785
LSPAPGGPG	9	Unmodified	_LSPAPGGPG_					0	0	0		ENSG00000213999|ENST00000424583|MEF2B;ENST00000409224.5_1_19:19256608-19257444:-|nuORF	ENSG00000213999|ENST00000424583|MEF2B	ENSG00000213999|ENST00000424583|MEF2B	MULTI-SECPEP	A375_MHC_IP_R2	2	751.7512817382812	1	752.39373	751.386454	-0.61214	-0.00046057	1.0694	0.00080459	0.45723	0.00034401	752.3941690953624	95.059	0.4564	95.81	95.533	95.99	0.75045					11	8	2	0	0	0	0.69504	1	36127	36127		12.532	0	1	1727700			33795	9596	24673	24846	32901	32901					0.0008158225482475245
LSPAPGGPG	9	Unmodified	_LSPAPGGPG_					0	0	0		ENSG00000213999|ENST00000424583|MEF2B;ENST00000409224.5_1_19:19256608-19257444:-|nuORF	ENSG00000213999|ENST00000424583|MEF2B	ENSG00000213999|ENST00000424583|MEF2B	MULTI-MATCH	A375_MHC_IP_R1	1		1	752.39373	751.386454	-0.52127	-0.0003922	0.3898	0.00029328	-0.13147	-9.8919E-05	752.3940801787642	95.993	0.3557	95.993	95.867	96.223	0	0.091512	-0.00018877	NaN	12.532	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2141900			33796	9596	24673	24846							0.0008158225482475245
LSPARYVTV	9	Unmodified	_LSPARYVTV_					0	0	0		nc|ENSG00000173011|Q86TJ2-3|TADA2B;nc|ENSG00000173011|Q86TJ2-2|TADA2B;ENSG00000173011|ENST00000310074|TADA2B	nc|ENSG00000173011|Q86TJ2-3|TADA2B	nc|ENSG00000173011|Q86TJ2-3|TADA2B	MULTI-SECPEP	A375_MHC_IP_R1	1	503.659912109375	2	503.290017	1004.56548	-0.47583	-0.00023948	-0.31739	-0.00015974	-0.79322	-0.00039922	503.2900898995991	65.321	0.50795	65.321	64.954	65.462	0					18	9	3	0	0	0	0.20645	1	23631	23631		56.177	3.9087	1	2511300			33797	7759	24674	24847	32902	32902					0.06338046822907017
LSPARYVTV	9	Unmodified	_LSPARYVTV_					0	0	0		nc|ENSG00000173011|Q86TJ2-3|TADA2B;nc|ENSG00000173011|Q86TJ2-2|TADA2B;ENSG00000173011|ENST00000310074|TADA2B	nc|ENSG00000173011|Q86TJ2-3|TADA2B	nc|ENSG00000173011|Q86TJ2-3|TADA2B	MULTI-SECPEP	A375_MHC_IP_R2	2	503.6896057128906	2	503.290017	1004.56548	-0.58137	-0.0002926	-0.69551	-0.00035004	-1.2769	-0.00064264	503.28998280517584	64.367	0.66345	65.108	64.749	65.412	0.74022					30	12	4	0	0	0	0.31606	1	24441	24441		47.749	5.6541	1	2352900			33798	7759	24674	24847	32903	32903					0.06338046822907017
LSPCPSPTSY	10	Unmodified	_LSPCPSPTSY_					0	0	0			REV__ENST00000338779.10_1_16:70695390-70695915:-|nuORF	REV__ENST00000338779.10_1_16:70695390-70695915:-|nuORF	MSMS	A375_MHC_IP_R1	1	526.0216064453125	2	526.241875	1050.4692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.182	1	72.182	71.682	72.682	0								0	0	0	0.13854	1	26253	26253		30.637	0.41173	1		+		33799	23702	24675	24848	32904	32904					-0.054018887993379394
LSPDCPKPTSP	11	Unmodified	_LSPDCPKPTSP_					0	0	0			REV__ENST00000528662.6_1_11:102584081-102593757:-|nuORF	REV__ENST00000528662.6_1_11:102584081-102593757:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	571.6988525390625	2	571.281531	1140.54851	-0.70921	-0.00040516	-2.3886	-0.0013645	-3.0978	-0.0017697	571.2797469976227	25.012	0.357	25.656	25.465	25.822	0.64368					14	6	3	0	0	0	0.98524	1	8227	8227		7.1017	1.3699	1	2053600	+		33800	18030	24676	24849	32905	32905					-0.01614241845209108
LSPDGDILERY	11	Unmodified	_LSPDGDILERY_					0	0	0			REV__nc|ENSG00000181982|Q6ZUS6-3|CCDC149	REV__nc|ENSG00000181982|Q6ZUS6-3|CCDC149	MULTI-MSMS	A375_MHC_IP_R2	2	639.7216796875	2	639.322242	1276.62993	-1.0455	-0.00066841	0.49287	0.0003151	-0.55263	-0.00035331	639.3226075167066	58.223	0.55746	58.972	58.578	59.135	0.74894					15	10	2	0	0	0	0.72728	1	22025	22025		11.495	0	1	3167300	+		33801	21670	24677	24850	32906	32906					0.002681571183984488
LSPDIEMAFL	10	Unmodified	_LSPDIEMAFL_					0	0	0			REV__ENST00000590633.1_1_19:12848319-12856427:+|nuORF	REV__ENST00000590633.1_1_19:12848319-12856427:+|nuORF	MSMS	A375_MHC_IP_R2	2	568.1406860351562	2	568.288825	1134.5631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.7	1	122.15	121.65	122.65	0.44488								0	0	0	0.15158	1	46582	46582		14.838	0	1		+		33802	22364	24678	24851	32907	32907					0.0011983030292412877
LSPDMDEMY	9	Unmodified	_LSPDMDEMY_					0	0	0		OLIG3|p.S13L|1|0.4|ENSG00000177468|chr6:137494133-137494133|G/A|missense_variant	OLIG3|p.S13L|1|0.4|ENSG00000177468|chr6:137494133-137494133|G/A|missense_variant	OLIG3|p.S13L|1|0.4|ENSG00000177468|chr6:137494133-137494133|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	550.616943359375	2	550.717375	1099.4202	-0.16502	-9.0877E-05	0.83518	0.00045995	0.67017	0.00036907	551.2184535112696	69.291	1.1673	69.291	68.463	69.631	0					31	22	2	0	0	0	0.6898	1	25168	25168		7.9102	0.62092	1	2565200			33803	15053	24679	24852	32908	32908					-0.12553545150603895
LSPDMDEMY	9	Unmodified	_LSPDMDEMY_					0	0	0		OLIG3|p.S13L|1|0.4|ENSG00000177468|chr6:137494133-137494133|G/A|missense_variant	OLIG3|p.S13L|1|0.4|ENSG00000177468|chr6:137494133-137494133|G/A|missense_variant	OLIG3|p.S13L|1|0.4|ENSG00000177468|chr6:137494133-137494133|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	551.2311401367188	2	550.717375	1099.4202	-0.78303	-0.00043123	0.82468	0.00045416	0.041651	2.2938E-05	551.2184871491556	76.897	1.5237	77.64	76.996	78.52	0.74293					42	29	2	0	0	0	0.72507	1	29419	29419		4.756	0	1	1501900			33804	15053	24679	24852	32909	32909					-0.12553545150603895
LSPDNTQIF	9	Unmodified	_LSPDNTQIF_					0	0	0			REV__ENSG00000140836|ENST00000268489|ZFHX3	REV__ENSG00000140836|ENST00000268489|ZFHX3	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1607666015625	2	517.761289	1033.50803	-1.1403	-0.00059042	0.74071	0.00038351	-0.39962	-0.00020691	517.7616997196272	57.057	0.56093	57.807	57.51	58.071	0.75015					13	10	2	0	0	0	0.59098	1	21579	21579		21.537	5.3879	1	1613700	+		33805	19232	24680	24853	32910	32910					-0.007388401733351202
LSPDRFDVEF	10	Unmodified	_LSPDRFDVEF_					0	0	0			REV__nc|ENSG00000075826|Q9NQW1-5|SEC31B	REV__nc|ENSG00000075826|Q9NQW1-5|SEC31B	MULTI-SECPEP	A375_MHC_IP_R1	1	613.1982421875	2	612.798403	1223.58225	-0.3649	-0.00022361	0.25972	0.00015916	-0.10518	-6.4453E-05	612.7984594294027	89.515	1.4677	89.515	88.97	90.437	0					69	28	3	0	0	0	0.6774	1	32937	32937		34.402	5.9072	1	6518600	+		33806	16663	24681	24854	32911	32911					-0.02059497081813788
LSPDRIQPH	9	Unmodified	_LSPDRIQPH_					0	0	0		nc|ENSG00000136541|Q8TAM6-2|ERMN	nc|ENSG00000136541|Q8TAM6-2|ERMN	nc|ENSG00000136541|Q8TAM6-2|ERMN	MULTI-SECPEP	A375_MHC_IP_R2	2	355.260986328125	3	354.861207	1061.56179	-0.13655	-4.8458E-05	-0.63412	-0.00022502	-0.77067	-0.00027348	354.8609896473181	44.241	0.40611	45.01	44.833	45.239	0.7691					10	7	2	0	0	0	0.78348	1	16543	16543		0.96228	0.96228	1	1972800			33807	14620	24682	24855	32912	32912					0.03347377049044553
LSPDRQYIK	9	Unmodified	_LSPDRQYIK_					0	0	0		nc|ENSG00000012504|Q96RI1-5|NR1H4;nc|ENSG00000012504|Q96RI1-2|NR1H4;ENSG00000012504|ENST00000392986|NR1H4;nc|ENSG00000012504|Q96RI1-4|NR1H4;nc|ENSG00000012504|Q96RI1|NR1H4	nc|ENSG00000012504|Q96RI1-5|NR1H4	nc|ENSG00000012504|Q96RI1-5|NR1H4	MULTI-SECPEP	A375_MHC_IP_R2	2	374.3009033203125	3	373.876746	1118.60841	0.33499	0.00012524	-0.4678	-0.0001749	-0.13281	-4.9655E-05	374.2120021642035	31.109	0.30468	31.828	31.618	31.923	0.71857					8	5	2	0	0	0	0.60917	1	10937	10937		13.615	0.74226	1	2792600			33808	1011	24683	24856	32913	32913					0.05384816880314247
LSPDSIQND	9	Unmodified	_LSPDSIQND_					0	0	0		nc|ENSG00000007516|O94812-7|BAIAP3;nc|ENSG00000007516|O94812-5|BAIAP3;nc|ENSG00000007516|O94812-3|BAIAP3;ENSG00000007516|ENST00000426824|BAIAP3;nc|ENSG00000007516|O94812-2|BAIAP3;nc|ENSG00000007516|O94812|BAIAP3;ENST00000564213.1_1_16:1396269-1397350:+|nuORF	nc|ENSG00000007516|O94812-7|BAIAP3	nc|ENSG00000007516|O94812-7|BAIAP3	MULTI-SECPEP	A375_MHC_IP_R2	2	495.1402893066406	2	494.732729	987.450904	-0.92363	-0.00045695	-3.9959	-0.0019769	-4.9195	-0.0024338	494.7305980854231	56.869	0.20247	57.619	57.51	57.712	0.75014					5	3	2	0	0	0	0.65246	1	21524	21524		15.847	4.2069	1	444310			33809	943	24684	24857	32914	32914					-0.04332307449715245
LSPEDIPDPV	10	Unmodified	_LSPEDIPDPV_					0	0	0			REV__ENSG00000101115|ENST00000217086|SALL4	REV__ENSG00000101115|ENST00000217086|SALL4	MULTI-SECPEP	A375_MHC_IP_R2	2	541.1129760742188	2	541.274229	1080.53391	-0.85567	-0.00046315	0.45075	0.00024398	-0.40492	-0.00021917	541.2741719247815	72.941	0.56053	73.677	73.429	73.99	0.7354					13	10	2	0	0	0	0.69172	1	27762	27762		13.906	0	1	1572000	+		33810	17143	24685	24858	32915	32915					-0.0031399072172462184
LSPEHLVHPV	10	Unmodified	_LSPEHLVHPV_					0	0	0			REV__ENST00000369037.8_1_6:107655524-107780637:-|nuORF	REV__ENST00000369037.8_1_6:107655524-107780637:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	375.9212951660156	3	376.545108	1126.61349	0.16697	6.287E-05	3.6644	0.0013798	3.8314	0.0014427	376.54672416091745	27.811	0.15245	27.811	27.684	27.836	0					4	2	2	0	0	0	0.92389	1	8442	8442		3.8763	2.2841	1	585530	+		33811	24005	24686	24859	32916	32916					0.055251207429591886
LSPESQTVW	9	Unmodified	_LSPESQTVW_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;USH2A|p.V2904Tfs*33|1|0.04|ENSG00000042781|chr1:215867142-215867143|CG/-|frameshift_variant	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	A375_MHC_IP_R1	1	523.674560546875	2	523.761289	1045.50803	-0.18196	-9.5301E-05	3.8058	0.0019933	3.6239	0.001898	524.2643198526704	48.137	0.30491	48.137	48.02	48.325	0					13	5	3	0	0	0	0.75164	1	17006	17006		13.906	2.2658	1	1814000			33812	1177	24687	24860	32917	32917					-0.012908401733284336
LSPETPLEV	9	Unmodified	_LSPETPLEV_					0	0	0			REV__ENSG00000129465|ENST00000216274|RIPK3	REV__ENSG00000129465|ENST00000216274|RIPK3	MULTI-MSMS	A375_MHC_IP_R2	2	493.1664123535156	2	492.76604	983.517527	-0.56082	-0.00027635	-0.10904	-5.373E-05	-0.66986	-0.00033008	492.7659069699056	107.46	1.4261	108.21	107.49	108.92	0.75436					50	27	3	0	0	0	0.17328	1	40537	40537		39.957	5.8549	1	2242300	+		33813	18491	24688	24861	32918	32918					0.02510928112201327
LSPFAITYLD	10	Unmodified	_LSPFAITYLD_					0	0	0		nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214;ENST00000460904.1_1_2:27259408-27260666:+|nuORF	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	MULTI-SECPEP	A375_MHC_IP_R1	1	381.2853088378906	3	380.537619	1138.59103	0.53882	0.00020504	-2.5192	-0.00095864	-1.9804	-0.0007536	380.53675869368993	37.469	0.30693	37.469	37.249	37.556	0					13	5	3	0	0	0	0.92227	1	12609	12609		5.0475	0	1	1366700			33814	3621	24689	24862	32919	32919					0.027274765546508206
LSPFDEEEF	9	Unmodified	_LSPFDEEEF_					0	0	0			REV__ENSG00000159592|ENST00000355105|GPBP1L1	REV__ENSG00000159592|ENST00000355105|GPBP1L1	MSMS	A375_MHC_IP_R1	1	556.6495971679688	2	556.742762	1111.47097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.31	1	103.31	102.81	103.81	0								0	0	0	0.1521	1	37951	37951		18.135	2.2878	1		+		33815	20128	24690	24863	32920	32920					-0.08030556509766029
LSPFDYDI	8	Unmodified	_LSPFDYDI_					0	0	0			REV__ENST00000477693.1_1_2:122488402-122494426:-|nuORF	REV__ENST00000477693.1_1_2:122488402-122494426:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	485.13702392578125	2	485.231833	968.449113	-0.2749	-0.00013339	-0.173	-8.3947E-05	-0.4479	-0.00021734	485.2317185281045	99.554	1.568	99.554	99.067	100.63	0					59	30	3	0	0	0	0.5503	1	36747	36747		46.921	14.804	1	19121000	+		33816	19923	24691	24864	32921	32921					-0.03637316467666096
LSPFDYDI	8	Unmodified	_LSPFDYDI_					0	0	0			REV__ENST00000477693.1_1_2:122488402-122494426:-|nuORF	REV__ENST00000477693.1_1_2:122488402-122494426:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	485.6834716796875	2	485.231833	968.449113	-0.48346	-0.00023459	0.066656	3.2344E-05	-0.4168	-0.00020225	485.2318113220265	98.821	1.3202	99.581	99.251	100.57	0.75977					49	25	3	0	0	0	0.6817	2	37636	37636;37646		40.449	14.107	1	22303000	+		33817	19923	24691	24864	32922;32923	32922					-0.03637316467666096
LSPFGRETV	9	Unmodified	_LSPFGRETV_					0	0	0			REV__TMEM26|p.S236F|1|0.28|ENSG00000196932|chr10:61410722-61410722|G/A|missense_variant	REV__TMEM26|p.S236F|1|0.28|ENSG00000196932|chr10:61410722-61410722|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	503.6896057128906	2	503.271824	1004.5291	-0.65074	-0.0003275	0.096635	4.8634E-05	-0.5541	-0.00027886	503.2717633624368	64.808	0.91457	65.546	65.155	66.069	0.73811					70	17	5	0	0	0	0.58047	1	24441	24441		15.847	1.0089	1	82158000	+		33818	22239	24692	24865	32924	32924					0.02701169926183411
LSPFPLVLD	9	Unmodified	_LSPFPLVLD_					0	0	0			REV__ENST00000524856.1_1_11:65381806-65381956:-|nuORF	REV__ENST00000524856.1_1_11:65381806-65381956:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	500.220947265625	2	500.789318	999.564084	-0.68281	-0.00034194	-2.6973	-0.0013508	-3.3801	-0.0016927	500.78856478470834	41.585	0.25447	42.36	42.198	42.453	0.77451					7	4	2	0	0	0	0.58271	1	15446	15446		20.454	1.1966	1	736530	+		33819	25761	24693	24866	32925	32925					0.06428412734123867
LSPGLRPLVFL	11	Unmodified	_LSPGLRPLVFL_					0	0	0		ENST00000348165.9_1_7:157061267-157061384:+|nuORF	ENST00000348165.9_1_7:157061267-157061384:+|nuORF	ENST00000348165.9_1_7:157061267-157061384:+|nuORF	MSMS	A375_MHC_IP_R1	1	404.6298828125	3	404.588536	1210.74378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.826	1	22.826	22.326	23.326	0								0	0	0	0.1628	1	6169	6169		4.1166	0.79699	1				33820	10916	24694	24867	32926	32926					0.14683716741933495
LSPGPSTPPGV	11	Unmodified	_LSPGPSTPPGV_					0	0	0		VWCE|p.A854V|1|0.4|ENSG00000167992|chr11:61258982-61258982|G/A|missense_variant	VWCE|p.A854V|1|0.4|ENSG00000167992|chr11:61258982-61258982|G/A|missense_variant	VWCE|p.A854V|1|0.4|ENSG00000167992|chr11:61258982-61258982|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	505.1988220214844	2	504.771657	1007.52876	-1.0579	-0.00053398	0.27376	0.00013819	-0.7841	-0.00039579	504.7716602379385	52.133	0.71031	52.885	52.574	53.285	0.75225					19	13	2	0	0	0	0.86796	1	19621	19621		20.415	8.7742	1	1562500			33821	30154	24695	24868	32927	32927					0.025297502063381216
LSPGVPPGV	9	Unmodified	_LSPGVPPGV_					0	0	0		ENST00000379339.5_2_1:1017356-1017647:-|nuORF	ENST00000379339.5_2_1:1017356-1017647:-|nuORF	ENST00000379339.5_2_1:1017356-1017647:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	823.051513671875	1	822.47198	821.464704	-0.44888	-0.00036919	0.06658	5.476E-05	-0.3823	-0.00031443	822.4719465606148	76.446	0.81193	76.446	76.067	76.878	0					29	15	3	0	0	0	0.71541	1	27999	27999		16.942	3.4344	1	7079700			33822	11333	24696	24869	32928	32928					0.04683014840054511
LSPGVPPGV	9	Unmodified	_LSPGVPPGV_					0	0	0		ENST00000379339.5_2_1:1017356-1017647:-|nuORF	ENST00000379339.5_2_1:1017356-1017647:-|nuORF	ENST00000379339.5_2_1:1017356-1017647:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	822.47198	821.464704	-0.80995	-0.00066616	0.14194	0.00011674	-0.66801	-0.00054942	822.4720227912534	75.674	0.76566	76.415	76.026	76.792	0.74052	-0.01573	4.124E-05	NaN	16.942	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8518600			33823	11333	24696	24869							0.04683014840054511
LSPHKHVSGF	10	Unmodified	_LSPHKHVSGF_					0	0	0		ENSG00000178031|ENST00000380548|ADAMTSL1;ENST00000380559.7_1_9:18706652-18908543:+|nuORF	ENSG00000178031|ENST00000380548|ADAMTSL1	ENSG00000178031|ENST00000380548|ADAMTSL1	MULTI-SECPEP	A375_MHC_IP_R1	1	369.60076904296875	3	370.201452	1107.58253	0.72886	0.00026982	-0.39138	-0.00014489	0.33748	0.00012494	370.20133917443684	48.661	0.50544	48.661	48.325	48.831	0					13	9	2	0	0	0	0.93615	1	17227	17227		0.69767	0	1	1064800			33824	8125	24697	24870	32929	32929					0.03303967428701071
LSPHLIGP	8	Unmodified	_LSPHLIGP_					0	0	0			REV__ENST00000523643.5_1_8:30240060-30240704:-|nuORF	REV__ENST00000523643.5_1_8:30240060-30240704:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	834.0015258789062	1	833.487965	832.480688	-0.98958	-0.0008248	0.49808	0.00041514	-0.4915	-0.00040966	833.4883613633324	49.94	0.40715	50.694	50.548	50.955	0.75406					10	7	2	0	0	0	0.972	1	18822	18822		9.3474	0	1	1481500	+		33825	25745	24698	24871	32930	32930					0.057747210769548474
LSPHTPLNSP	10	Unmodified	_LSPHTPLNSP_					0	0	0			REV__ENST00000573130.2_1_16:3104061-3104997:-|nuORF	REV__ENST00000573130.2_1_16:3104061-3104997:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	531.669677734375	2	531.782556	1061.55056	-1.1842	-0.00062976	1.1222	0.00059674	-0.06209	-3.3018E-05	531.7826295922325	52.838	0.35385	53.589	53.385	53.739	0.75105					10	6	2	0	0	0	0.87163	1	19863	19863		19.257	7.0163	1	1209700	+		33826	26292	24699	24872	32931	32931					0.022245549548870258
LSPIGGDSIMI	11	Unmodified	_LSPIGGDSIMI_					0	0	0			REV__ENSG00000145526|ENST00000382275|CDH18	REV__ENSG00000145526|ENST00000382275|CDH18	MULTI-MSMS	A375_MHC_IP_R2	2	368.5977783203125	3	368.198609	1101.574	-0.24406	-8.9862E-05	-1.8801	-0.00069226	-2.1242	-0.00078212	368.19773633743415	25.577	0.50819	26.236	25.941	26.449	0.65992					16	9	2	0	0	0	0.72515	1	8587	8587		13.519	6.0416	1	3117700	+		33827	19478	24700	24873	32932	32932					0.027272326771935695
LSPISMGFL	9	Unmodified	_LSPISMGFL_					0	0	0			REV__nc|ENSG00000158865|Q8WWX8-5|SLC5A11	REV__nc|ENSG00000158865|Q8WWX8-5|SLC5A11	MSMS	A375_MHC_IP_R1	1	482.6684265136719	2	482.762246	963.50994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.72	1	110.72	110.22	111.22	0								0	0	0	0.14359	1	40593	40593		28.487	3.813	1		+		33828	20093	24701	24874	32933	32933					0.02672497310925337
LSPKGLRAEIY	11	Unmodified	_LSPKGLRAEIY_					0	0	0			REV__ENSG00000215915|ENST00000378785|ATAD3C	REV__ENSG00000215915|ENST00000378785|ATAD3C	MULTI-SECPEP	A375_MHC_IP_R1	1	416.43072509765625	3	416.243317	1245.70812	-0.0045112	-1.8778E-06	0.24764	0.00010308	0.24313	0.0001012	416.57784214762484	39.777	0.45729	39.777	39.541	39.999	0					18	8	3	0	0	0	0.99252	1	13591	13591		8.2864	0	1	4793900	+		33829	22679	24702	24875	32934	32934					0.09509634494270358
LSPKWPPL	8	Unmodified	_LSPKWPPL_					0	0	0			REV__ENST00000376609.1_1_17:47923566-47924646:+|nuORF	REV__ENST00000376609.1_1_17:47923566-47924646:+|nuORF	MSMS	A375_MHC_IP_R2	2	469.2783508300781	2	469.278921	936.543289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.321	1	94.06	93.56	94.56	0.73902								0	0	0	0.16876	1	35478	35478		10.183	0	1		+		33830	24147	24703	24876	32935	32935					0.072478671451222
LSPLLRSRSI	10	Unmodified	_LSPLLRSRSI_					0	0	0		ENST00000360338.3_1_19:57804034-57804283:+|nuORF	ENST00000360338.3_1_19:57804034-57804283:+|nuORF	ENST00000360338.3_1_19:57804034-57804283:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	380.9364318847656	3	381.239907	1140.69789	-0.023429	-8.932E-06	0.31935	0.00012175	0.29592	0.00011282	381.2400392083886	27.211	0.35678	27.889	27.69	28.047	0.67857					12	6	3	0	0	0	0.93407	1	9316	9316		4.4062	0	1	2392600			33831	11026	24704	24877	32936	32936					0.13317071559708893
LSPLNLEVDP	10	Unmodified	_LSPLNLEVDP_					0	0	0		ENST00000430398.2_1_1:73570714-73571443:+|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552	ENST00000430398.2_1_1:73570714-73571443:+|nuORF	ENST00000430398.2_1_1:73570714-73571443:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	548.2015380859375	2	548.797872	1095.58119	-0.44372	-0.00024351	0.90033	0.0004941	0.45661	0.00025058	548.7980525594949	28.542	0.25347	28.542	28.39	28.643	0					7	4	2	0	0	0	0.87043	1	8755	8755		10.8	2.644	1	1335800		+	33832	633	24705	24878	32937	32937					0.03722288549283803
LSPLPLHSSW	10	Unmodified	_LSPLPLHSSW_					0	0	0		ENST00000503766.5_1_6:43190510-43190918:+|nuORF	ENST00000503766.5_1_6:43190510-43190918:+|nuORF	ENST00000503766.5_1_6:43190510-43190918:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	378.9244689941406	3	379.541475	1135.60259	-0.25629	-9.7273E-05	0.50009	0.00018981	0.2438	9.2532E-05	379.5417528525614	52.001	0.30749	52.754	52.524	52.831	0.75225					9	5	2	0	0	0	0.90853	1	19556	19556		18.373	0.93045	1	2164700			33833	12810	24706	24879	32938	32938					0.04021718368676375
LSPLQQNLF	9	Unmodified	_LSPLQQNLF_					0	0	0		ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1	ENSG00000136731|ENST00000259253|UGGT1	ENSG00000136731|ENST00000259253|UGGT1	MSMS	A375_MHC_IP_R1	1	530.2216186523438	2	530.295299	1058.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.459	1	92.459	91.959	92.959	0								0	0	0	0.14812	1	33979	33979		24.674	1.5255	1				33834	4810	24707	24880	32939	32939					0.04910029477309763
LSPLREPILLT	11	Unmodified	_LSPLREPILLT_					0	0	0		AK9|p.P1787S|1|0.34|ENSG00000155085|chr6:109495397-109495397|G/A|missense_variant	AK9|p.P1787S|1|0.34|ENSG00000155085|chr6:109495397-109495397|G/A|missense_variant	AK9|p.P1787S|1|0.34|ENSG00000155085|chr6:109495397-109495397|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	418.3270568847656	3	417.927218	1250.75982	-0.34523	-0.00014428	-0.57888	-0.00024193	-0.92412	-0.00038621	417.9271323477392	51.98	1.268	52.732	52.118	53.386	0.75225					31	24	2	0	0	0	0.99856	1	19668	19668		5.5233	3.0885	1	2605800			33835	93	24708	24881	32940	32940					0.14447378188197035
LSPLRFSTN	9	Unmodified	_LSPLRFSTN_					0	0	0			REV__nc|ENSG00000075391|Q9UJF2|RASAL2	REV__nc|ENSG00000075391|Q9UJF2|RASAL2	MULTI-MSMS	A375_MHC_IP_R2	2	517.7052001953125	2	517.785099	1033.55564	-0.71646	-0.00037097	0.32446	0.000168	-0.392	-0.00020297	517.785181900477	70.67	0.35379	71.405	71.099	71.453	0.73421					17	6	3	0	0	0	0.064406	1	26801	26801		58.679	16.584	1	3126000	+		33836	16655	24709	24882	32941	32941					0.04020858817534645
LSPLRFSTN	9	Unmodified	_LSPLRFSTN_					0	0	0			REV__nc|ENSG00000075391|Q9UJF2|RASAL2	REV__nc|ENSG00000075391|Q9UJF2|RASAL2	MULTI-SECPEP	A375_MHC_IP_R2	2	518.184326171875	2	517.785099	1033.55564	-0.71646	-0.00037097	0.32446	0.000168	-0.392	-0.00020297	517.785181900477	70.67	0.35379	71.405	71.099	71.453	0.73421					17	6	3	0	0	0	0.39388	1	26792	26792		32.305	2.0807	1	3126000	+		33837	16655	24709	24882	32942	32942					0.04020858817534645
LSPLRFSTN	9	Unmodified	_LSPLRFSTN_					0	0	0			REV__nc|ENSG00000075391|Q9UJF2|RASAL2	REV__nc|ENSG00000075391|Q9UJF2|RASAL2	MULTI-SECPEP	A375_MHC_IP_R2	2	517.6456909179688	2	517.785099	1033.55564	-1.0033	-0.00051948	0.12406	6.4237E-05	-0.87922	-0.00045524	517.7850831443216	71.418	0.40461	72.153	71.959	72.364	0.73421					12	7	2	0	0	0	0.28216	1	27084	27084		49.933	15.831	1	3164400	+		33838	16655	24709	24882	32943	32943					0.04020858817534645
LSPLRPAA	8	Unmodified	_LSPLRPAA_					0	0	0		ENST00000536896.2_1_1:26146746-26147157:-|nuORF	ENST00000536896.2_1_1:26146746-26147157:-|nuORF	ENST00000536896.2_1_1:26146746-26147157:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	412.2955627441406	2	412.75307	823.491587	-0.35782	-0.00014769	0.47594	0.00019645	0.11812	4.8753E-05	412.7531861776639	38.588	0.45605	39.362	38.997	39.453	0.77451					11	8	2	0	0	0	0.8957	1	14250	14250		15.847	0	1	1712600			33839	13243	24710	24883	32944	32944					0.07278123451226293
LSPLSPFTGGG	11	Unmodified	_LSPLSPFTGGG_					0	0	0			REV__ENST00000589796.2_1_17:43246178-43246817:-|nuORF	REV__ENST00000589796.2_1_17:43246178-43246817:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1712646484375	2	516.771657	1031.52876	-0.74717	-0.00038612	-0.0091124	-4.709E-06	-0.75629	-0.00039083	516.7716591948441	70.643	0.45489	71.377	71.048	71.503	0.73421					13	8	2	0	0	0	0.75408	1	26814	26814		34.402	2.0962	1	2652600	+		33840	26425	24711	24884	32945	32945					0.014257502063401262
LSPLSYRVV	9	Unmodified	_LSPLSYRVV_					0	0	0		ENST00000530796.1_1_8:145140395-145141025:+|nuORF	ENST00000530796.1_1_8:145140395-145141025:+|nuORF	ENST00000530796.1_1_8:145140395-145141025:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	517.7054443359375	2	517.305667	1032.59678	-0.72562	-0.00037537	-0.66713	-0.00034511	-1.3928	-0.00072048	517.3052619784711	84.385	0.86297	84.385	83.989	84.852	0					29	16	3	0	0	0	0.63327	1	30885	30885		13.042	0	1	1340700			33841	13157	24712	24885	32946	32946					0.08178619856994374
LSPLTPARLL	10	Unmodified	_LSPLTPARLL_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;ENST00000460658.5_1_22:31484094-31491444:+|nuORF;ENST00000489337.5_1_22:31484532-31494796:+|nuORF	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	MSMS	A375_MHC_IP_R2	2	360.92572021484375	3	360.89737	1079.67028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.65	1	32.387	31.887	32.887	0.73692								0	0	0	0.15332	1	11203	11203		8.9762	3.5735	1				33842	8546	24713	24886	32947	32947					0.13363168299474637
LSPMSLLVIW	10	Unmodified	_LSPMSLLVIW_					0	0	0			REV__ENSG00000197121|ENST00000354764|PGAP1	REV__ENSG00000197121|ENST00000354764|PGAP1	MULTI-MSMS	A375_MHC_IP_R1	1	386.94873046875	3	386.891227	1157.65185	0.37074	0.00014343	2.3025	0.00089083	2.6733	0.0010343	386.89202479062385	47.693	1.0601	47.693	47.366	48.426	0					56	20	4	0	0	0	0.70496	1	16688	16688		8.9762	0.53194	1	27750000	+		33843	22256	24714	24887	32948	32948					0.07933290333244258
LSPNTLDEL	9	Unmodified	_LSPNTLDEL_					0	0	0		SBNO1|p.P870S|1|0.21|ENSG00000139697|chr12:123320491-123320491|G/A|missense_variant	SBNO1|p.P870S|1|0.21|ENSG00000139697|chr12:123320491-123320491|G/A|missense_variant	SBNO1|p.P870S|1|0.21|ENSG00000139697|chr12:123320491-123320491|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	501.18682861328125	2	501.261122	1000.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.899	1	54.65	54.15	55.15	0.75105								0	0	0	0.15069	1	20348	20348		20.454	0	1				33844	29110	24715	24888	32949	32949					0.007457401068108993
LSPNYTGQCP	10	Unmodified	_LSPNYTGQCP_					0	0	0		nc|ENSG00000114378|Q12794-3|HYAL1;nc|ENSG00000114378|Q12794-2|HYAL1;ENSG00000114378|ENST00000395144|HYAL1;nc|ENSG00000114378|Q12794-7|HYAL1	nc|ENSG00000114378|Q12794-3|HYAL1	nc|ENSG00000114378|Q12794-3|HYAL1	MULTI-MSMS	A375_MHC_IP_R1	1	540.1801147460938	2	540.244949	1078.47534	-0.98383	-0.00053151	-0.57421	-0.00031022	-1.558	-0.00084172	540.2450320245058	29.164	0.81123	29.164	28.592	29.403	0					23	15	3	0	0	0	0.6502	1	8895	8895		17.113	17.113	1	3637200			33845	3215	24716	24889	32950	32950					-0.06075370567828031
LSPPFSRQMS	10	Unmodified	_LSPPFSRQMS_					0	0	0		ENST00000425712.1_1_7:156265258-156395789:-|nuORF;ENST00000447933.5_1_7:156265258-156398034:-|nuORF	ENST00000425712.1_1_7:156265258-156395789:-|nuORF	ENST00000425712.1_1_7:156265258-156395789:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	575.6889038085938	2	575.289691	1148.56483	-0.12888	-7.4141E-05	-1.5891	-0.00091418	-1.718	-0.00098832	575.789855699255	79.631	1.2688	80.376	79.997	81.265	0.74474					30	24	2	0	0	0	0.52785	1	30207	30207		26.268	6.9062	1	4250200			33846	11791	24717	24890	32951	32951					-0.003511158884748511
LSPPKRRRKRK	11	Unmodified	_LSPPKRRRKRK_					0	0	0		nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	MSMS	A375_MHC_IP_R2	2	711.5285034179688	2	711.468035	1420.92152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.176	1	89.907	89.407	90.407	0.7318								0	0	0	0.16354	1	33939	33939		0.30703	0	1				33847	8681	24718	24891	32952	32952					0.22789404784452927
LSPPSVKDNF	10	Unmodified	_LSPPSVKDNF_					0	0	0			REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MULTI-SECPEP	A375_MHC_IP_R2	2	368.2801208496094	3	368.529235	1102.56587	-0.19744	-7.2761E-05	0.076358	2.814E-05	-0.12108	-4.4621E-05	368.52866315045486	25.197	0.563	25.841	25.465	26.028	0.64368					22	10	3	0	0	0	0.91909	1	8451	8451		5.4027	0	1	2747000	+		33848	19903	24719	24892	32953	32953					0.018694217520987877
LSPQISLGV	9	Unmodified	_LSPQISLGV_					0	0	0		ENSG00000163961|ENST00000318037|RNF168	ENSG00000163961|ENST00000318037|RNF168	ENSG00000163961|ENST00000318037|RNF168	MULTI-MSMS	A375_MHC_IP_R2	2	457.67071533203125	2	457.271293	912.528032	-0.43841	-0.00020047	1.7651	0.00080711	1.3266	0.00060663	457.2711537089629	51.298	0.55618	52.051	51.663	52.219	0.75225					23	10	3	0	0	0	0.054426	1	19333	19333		62.573	1.2152	1	1713400			33849	6755	24720	24893	32954	32954					0.06826955557301062
LSPQYVHNL	9	Unmodified	_LSPQYVHNL_					0	0	0		ENSG00000182197|ENST00000378204|EXT1	ENSG00000182197|ENST00000378204|EXT1	ENSG00000182197|ENST00000378204|EXT1	MULTI-SECPEP	A375_MHC_IP_R1	1	535.16796875	2	535.785099	1069.55564	-0.64396	-0.00034502	0.14262	7.6415E-05	-0.50134	-0.00026861	535.7851006380087	57.087	0.40669	57.087	56.804	57.211	0					11	7	2	0	0	0	0.55359	1	20419	20419		10.824	0	1	1749400			33850	8387	24721	24894	32955	32955					0.0236485881750923
LSPRESIQL	9	Unmodified	_LSPRESIQL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	A375_MHC_IP_R2	2	522.197998046875	2	521.798206	1041.58186	-0.62136	-0.00032423	-0.027157	-1.417E-05	-0.64852	-0.0003384	521.798125292615	75.516	0.51103	76.256	75.925	76.436	0.74052					16	9	2	0	0	0	0.56537	1	28650	28650		17.113	0	1	5696800			33851	4900	24722	24895	32956	32956					0.06273127989015848
LSPRHWQTTRN	11	Unmodified	_LSPRHWQTTRN_					0	0	0			REV__nc|ENSG00000049759|Q96PU5-9|NEDD4L	REV__nc|ENSG00000049759|Q96PU5-9|NEDD4L	MULTI-MSMS	A375_MHC_IP_R2	2	699.031982421875	2	698.365641	1394.71673	-0.65507	-0.00045748	2.9625	0.0020689	2.3075	0.0016114	698.8697863791027	78.466	0.15231	79.211	79.134	79.287	0.74474					4	2	2	0	0	0	0.73472	1	29811	29811		1.0715	0	1	1432500	+		33852	15729	24723	24896	32957	32957					0.0351600118344777
LSPRLQLVF	9	Unmodified	_LSPRLQLVF_					0	0	0			REV__ENSG00000152578|ENST00000282499|GRIA4	REV__ENSG00000152578|ENST00000282499|GRIA4	MULTI-SECPEP	A375_MHC_IP_R1	1	537.2283325195312	2	536.829309	1071.64407	-1.0607	-0.00056941	0.021629	1.1611E-05	-1.0391	-0.00055779	536.8291620493717	67.648	1.0654	67.648	67.245	68.31	0					56	20	4	0	0	0	0.50484	1	24472	24472		30.637	4.3684	1	25688000	+		33853	19807	24724	24897	32958	32958					0.11110899127993434
LSPRLTIHA	9	Unmodified	_LSPRLTIHA_					0	0	0		TPR|p.P2082S|1|0.37|ENSG00000047410|chr1:186323739-186323739|G/A|missense_variant	TPR|p.P2082S|1|0.37|ENSG00000047410|chr1:186323739-186323739|G/A|missense_variant	TPR|p.P2082S|1|0.37|ENSG00000047410|chr1:186323739-186323739|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	504.7030334472656	2	504.303458	1006.59236	-0.89011	-0.00044888	2.002	0.0010096	1.1119	0.00056073	504.3035095005404	50.133	0.50849	50.887	50.65	51.159	0.75406					16	9	3	0	0	0	0.75842	1	18885	18885		8.7454	6.1679	1	1836300			33854	29380	24725	24898	32959	32959					0.0893315543406743
LSPRRRRWRR	10	Unmodified	_LSPRRRRWRR_					0	0	0		ENST00000375344.7_1_9:97136898-97137102:+|nuORF	ENST00000375344.7_1_9:97136898-97137102:+|nuORF	ENST00000375344.7_1_9:97136898-97137102:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	360.6053161621094	4	360.473626	1437.8654	-0.52759	-0.00019018	-0.99019	-0.00035694	-1.5178	-0.00054712	360.4732786650831	20.702	0.50751	21.312	21.059	21.566	0.61029					13	9	2	0	0	0	0.94755	1	6449	6449		0.50596	0.50596	1	803790			33855	11269	24726	24899	32960	32960					0.1639819666766016
LSPRSLGW	8	Unmodified	_LSPRSLGW_					0	0	0			REV__ENST00000317271.2_1_7:99816887-99817430:+|nuORF	REV__ENST00000317271.2_1_7:99816887-99817430:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	458.65533447265625	2	458.255977	914.497401	-0.65376	-0.00029959	0.42283	0.00019376	-0.23093	-0.00010582	458.25610712018465	56.367	0.61186	57.117	56.745	57.356	0.75015					23	11	3	0	0	0	0.73622	1	21302	21302		24.021	0.87215	1	7143700	+		33856	23544	24727	24900	32961	32961					0.036732219628902385
LSPRTWRAD	9	Unmodified	_LSPRTWRAD_					0	0	0			REV__ENSG00000174137|ENST00000308132|FAM53A	REV__ENSG00000174137|ENST00000308132|FAM53A	MULTI-SECPEP	A375_MHC_IP_R2	2	367.5965881347656	3	367.86484	1100.57269	-0.062706	-2.3067E-05	2.5394	0.00093416	2.4767	0.00091109	367.86603514447137	41.171	0.35499	41.945	41.794	42.149	0.77451					9	6	2	0	0	0	0.76827	1	15331	15331		2.086	0	1	824760	+		33857	21267	24728	24901	32962	32962					0.026427794233086388
LSPSDTDHY	9	Unmodified	_LSPSDTDHY_					0	0	0		nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	MULTI-SECPEP	A375_MHC_IP_R1	1	518.1241455078125	2	517.724904	1033.43525	-0.8548	-0.00044255	-0.34741	-0.00017986	-1.2022	-0.00062241	517.7246106836872	26.593	0.35524	26.593	26.423	26.779	0					11	6	3	0	0	0	0.55359	1	7986	7986		21.747	6.9084	1	2982100			33858	14576	24729	24902	32963	32963					-0.08012593966759596
LSPSDTDHY	9	Unmodified	_LSPSDTDHY_					0	0	0		nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	MULTI-MATCH	A375_MHC_IP_R2	2		2	517.724904	1033.43525	-1.1501	-0.00059545	0.51271	0.00026544	-0.63742	-0.00033001	517.7248939513794	26.063	0.3556	26.723	26.602	26.957	0.65992	0.064988	0.00078938	NaN	21.747	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1833800			33859	14576	24729	24902							-0.08012593966759596
LSPSELGTSPF	11	Unmodified	_LSPSELGTSPF_					0	0	0			REV__ENST00000551964.5_2_12:99039456-99042104:+|nuORF	REV__ENST00000551964.5_2_12:99039456-99042104:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	379.2612609863281	3	378.860761	1133.56045	0.44214	0.00016751	0.76063	0.00028817	1.2028	0.00045568	378.86105408690645	35.943	0.96732	35.943	35.269	36.236	0					24	18	2	0	0	0	0.67989	1	12004	12004		9.7643	0	1	3044000	+		33860	26048	24730	24903	32964	32964					-0.0009830183039412077
LSPSLEGEVT	10	Unmodified	_LSPSLEGEVT_					0	0	0			REV__ENST00000496429.1_1_5:132202352-132203185:+|nuORF	REV__ENST00000496429.1_1_5:132202352-132203185:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	516.6663818359375	2	516.266404	1030.51826	-0.96279	-0.00049705	0.43014	0.00022207	-0.53265	-0.00027499	516.2665552108331	34.768	0.45451	35.531	35.324	35.778	0.76338					16	8	3	0	0	0	0.91909	1	12633	12633		13.906	1.3745	1	2918300	+		33861	25460	24731	24904	32965	32965					0.004217227612343777
LSPSLEGEVT	10	Unmodified	_LSPSLEGEVT_					0	0	0			REV__ENST00000496429.1_1_5:132202352-132203185:+|nuORF	REV__ENST00000496429.1_1_5:132202352-132203185:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	516.266404	1030.51826	-0.3211	-0.00016577	0.46004	0.00023751	0.13894	7.1732E-05	516.2664993952894	35.677	0.46034	35.677	35.472	35.932	0	0.073215	1.3183E-05	NaN	13.906	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3454700	+		33862	25460	24731	24904							0.004217227612343777
LSPSPPRLL	9	Unmodified	_LSPSPPRLL_					0	0	0		ENST00000552421.5_1_14:75230108-75230153:+|nuORF	ENST00000552421.5_1_14:75230108-75230153:+|nuORF	ENST00000552421.5_1_14:75230108-75230153:+|nuORF	MSMS	A375_MHC_IP_R2	2	490.685546875	2	490.300384	978.586216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.925	1	71.659	71.159	72.159	0.73421								0	0	0	0.15069	1	26895	26895		20.454	3.5113	1				33863	13390	24732	24905	32966	32966					0.09606637202557522
LSPTEGHQGS	10	Unmodified	_LSPTEGHQGS_					0	0	0			REV__ENST00000596390.1_1_19:7587593-7590231:+|nuORF	REV__ENST00000596390.1_1_19:7587593-7590231:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	506.1846923828125	2	506.738345	1011.46214	-0.20746	-0.00010513	0.17437	8.8359E-05	-0.03309	-1.6768E-05	506.738315250104	44.253	0.20525	44.253	44.113	44.318	0					6	3	2	0	0	0	0.78945	1	15395	15395		9.3831	0	1	1036600	+		33864	26472	24733	24906	32967	32967					-0.04313485355555713
LSPTKIGHLN	10	Unmodified	_LSPTKIGHLN_					0	0	0		ENSG00000171206|ENST00000643721|TRIM8	ENSG00000171206|ENST00000643721|TRIM8	ENSG00000171206|ENST00000643721|TRIM8	MULTI-SECPEP	A375_MHC_IP_R2	2	361.2452697753906	3	360.545108	1078.61349	-0.48509	-0.0001749	-0.13249	-4.777E-05	-0.61758	-0.00022267	360.54505257656575	30.075	0.40592	30.794	30.454	30.86	0.71857					10	7	2	0	0	0	0.93232	1	10563	10563		2.6312	0.88896	1	854230			33865	7581	24734	24907	32968	32968					0.0773312074295518
LSPTPLNIQT	10	Unmodified	_LSPTPLNIQT_					0	0	0			REV__ENST00000423931.1_1_3:192873384-192874521:-|nuORF	REV__ENST00000423931.1_1_3:192873384-192874521:-|nuORF	MSMS	A375_MHC_IP_R1	1	361.93292236328125	3	361.873001	1082.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.857	1	39.857	39.357	40.357	0								0	0	0	0.15306	1	13658	13658		10.899	0.58372	1		+		33866	24618	24735	24908	32969	32969					0.05917994786159397
LSPTQNESL	9	Unmodified	_LSPTQNESL_					0	0	0		nc|ENSG00000103723|Q13367-3|AP3B2;nc|ENSG00000103723|Q13367|AP3B2;ENSG00000103723|ENST00000535359|AP3B2	nc|ENSG00000103723|Q13367-3|AP3B2	nc|ENSG00000103723|Q13367-3|AP3B2	MULTI-MSMS	A375_MHC_IP_R2	2	494.6949462890625	2	494.750921	987.48729	-1.2563	-0.00062156	-0.28047	-0.00013876	-1.5368	-0.00076032	494.75101564872926	29.388	0.45561	30.087	29.83	30.286	0.69872					16	8	4	0	0	0	0.29981	1	10217	10217		30.637	3.7529	1	2734100			33867	2467	24736	24909	32970	32970					-0.006954305530030069
LSPTRQLAM	9	Unmodified	_LSPTRQLAM_					0	0	0		ENST00000450119.1_1_10:92813377-92813905:+|nuORF	ENST00000450119.1_1_10:92813377-92813905:+|nuORF	ENST00000450119.1_1_10:92813377-92813905:+|nuORF	MSMS	A375_MHC_IP_R2	2	508.71099853515625	2	508.781502	1015.54845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.774	1	46.539	46.039	47.039	0.76519								0	0	0	0.15486	1	17122	17122		8.5933	1.8701	1				33868	12064	24737	24910	32971	32971					0.041298029454537755
LSPTSSEAEF	10	Unmodified	_LSPTSSEAEF_					0	0	0		nc|ENSG00000164830|Q8N573-3|OXR1;nc|ENSG00000164830|Q8N573-2|OXR1;nc|ENSG00000164830|Q8N573-5|OXR1;ENSG00000164830|ENST00000517566|OXR1;nc|ENSG00000164830|Q8N573|OXR1	nc|ENSG00000164830|Q8N573-3|OXR1	nc|ENSG00000164830|Q8N573-3|OXR1	MULTI-SECPEP	A375_MHC_IP_R1	1	534.6480102539062	2	534.248212	1066.48187	-0.70413	-0.00037618	0.59423	0.00031747	-0.10989	-5.871E-05	534.2486547578916	77.258	1.1707	77.258	76.776	77.946	0					58	22	4	0	0	0	0.78945	1	28110	28110		19.257	1.1106	1	12213000			33869	6886	24738	24911	32972	32972					-0.04871154135480538
LSPTVVLPD	9	Unmodified	_LSPTVVLPD_					0	0	0		ENST00000445289.6_1_17:18067119-18075721:+|nuORF	ENST00000445289.6_1_17:18067119-18075721:+|nuORF	ENST00000445289.6_1_17:18067119-18075721:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	940.3925170898438	1	940.534975	939.527698	0.049776	4.6816E-05	-3.0274	-0.0028473	-2.9776	-0.0028005	940.5365213049599	128.63	0.20206	128.63	128.48	128.68	0					5	3	2	0	0	0	0.75466	1	49359	49359		4.3292	0	1	4359800			33870	12024	24739	24912	32973	32973					0.05551535837423671
LSPWKQEIK	9	Unmodified	_LSPWKQEIK_					0	0	0		chr19:14800149-14800256|274|14.89|0.56|4.74|-|2|OR7C1,OR7C1|1	chr19:14800149-14800256|274|14.89|0.56|4.74|-|2|OR7C1,OR7C1|1	chr19:14800149-14800256|274|14.89|0.56|4.74|-|2|OR7C1,OR7C1|1	MULTI-SECPEP	A375_MHC_IP_R1	1	565.2239990234375	2	564.824224	1127.63389	-0.3517	-0.00019865	-0.066946	-3.7813E-05	-0.41865	-0.00023646	564.8241061175657	62.014	0.61419	62.014	61.737	62.351	0					28	11	3	0	0	0	0.3213	1	22360	22360		30.637	0.79596	1	10812000			33871	451	24740	24913	32974	32974					0.07518291402743671
LSPWKQEIK	9	Unmodified	_LSPWKQEIK_					0	0	0		chr19:14800149-14800256|274|14.89|0.56|4.74|-|2|OR7C1,OR7C1|1	chr19:14800149-14800256|274|14.89|0.56|4.74|-|2|OR7C1,OR7C1|1	chr19:14800149-14800256|274|14.89|0.56|4.74|-|2|OR7C1,OR7C1|1	MULTI-SECPEP	A375_MHC_IP_R2	2	565.2235717773438	2	564.824224	1127.63389	-0.77551	-0.00043803	0.28201	0.00015929	-0.4935	-0.00027874	564.8242626527131	61.137	0.75543	61.882	61.566	62.322	0.74503					33	14	4	0	0	0	0.4261	1	23140	23140		30.637	1.555	1	8458600			33872	451	24740	24913	32975	32975					0.07518291402743671
LSPWPLPAPS	10	Unmodified	_LSPWPLPAPS_					0	0	0		ENST00000359297.6_1_1:36806610-36807063:-|nuORF	ENST00000359297.6_1_1:36806610-36807063:-|nuORF	ENST00000359297.6_1_1:36806610-36807063:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	354.95709228515625	3	355.530687	1063.57023	-0.48185	-0.00017131	-1.3931	-0.0004953	-1.875	-0.00066661	355.53013036248484	28.354	0.7111	29.032	28.502	29.214	0.67857					15	13	2	0	0	0	0.78945	1	9603	9603		16.566	16.566	1	1016800			33873	11012	24741	24914	32976	32976					0.040989309656424666
LSPWPRLQ	8	Unmodified	_LSPWPRLQ_					0	0	0		ENST00000359092.7_1_19:41727901-41736877:+|nuORF	ENST00000359092.7_1_19:41727901-41736877:+|nuORF	ENST00000359092.7_1_19:41727901-41736877:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	499.184326171875	2	498.784902	995.55525	0.094296	4.7033E-05	0.20274	0.00010112	0.29704	0.00014816	498.78470228105897	49.3	0.65905	49.3	48.831	49.49	0					26	12	3	0	0	0	0.86263	1	17445	17445		26.884	2.2098	1	2521600			33874	11007	24742	24915	32977	32977					0.057294838883080956
LSPWPRLQ	8	Unmodified	_LSPWPRLQ_					0	0	0		ENST00000359092.7_1_19:41727901-41736877:+|nuORF	ENST00000359092.7_1_19:41727901-41736877:+|nuORF	ENST00000359092.7_1_19:41727901-41736877:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	498.784902	995.55525	-0.48182	-0.00024032	0.82609	0.00041204	0.34427	0.00017172	498.78489485761037	48.318	0.65447	49.075	48.628	49.282	0.75737	-0.11235	0.00020293	NaN	26.884	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3287500			33875	11007	24742	24915							0.057294838883080956
LSPYVYYTF	9	Unmodified	_LSPYVYYTF_					0	0	0		L1CAM|p.H684Y|1|0.76|ENSG00000198910|chrX:153867443-153867443|G/A|missense_variant	L1CAM|p.H684Y|1|0.76|ENSG00000198910|chrX:153867443-153867443|G/A|missense_variant	L1CAM|p.H684Y|1|0.76|ENSG00000198910|chrX:153867443-153867443|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	576.7031860351562	2	576.784233	1151.55391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.392	1	48.153	47.653	48.653	0.76128								0	0	0	0.1535	1	17769	17769		15.847	2.8047	1				33876	14245	24743	24916	32978	32978					-0.015801949911065094
LSQAEKNNCP	10	Unmodified	_LSQAEKNNCP_					0	0	0			REV__ENST00000421315.1_1_6:74000565-74000652:+|nuORF	REV__ENST00000421315.1_1_6:74000565-74000652:+|nuORF	MSMS	A375_MHC_IP_R2	2	552.18896484375	2	552.26113	1102.50771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.29	1	105.05	104.55	105.55	0.76308								0	0	0	0.15288	1	39462	39462		11.495	0.67078	1		+		33877	24589	24744	24917	32979	32979					-0.03944583164843607
LSQAFEQF	8	Unmodified	_LSQAFEQF_					0	0	0			REV__ENST00000533291.5_1_11:120531027-120833419:+|nuORF	REV__ENST00000533291.5_1_11:120531027-120833419:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	485.19232177734375	2	485.23745	968.460347	-0.13567	-6.5831E-05	-1.4432	-0.00070031	-1.5789	-0.00076614	485.23715794526123	49.947	0.91789	49.947	49.49	50.408	0					22	17	2	0	0	0	0.7754	1	17535	17535		11.64	0.52583	1	1147100	+		33878	19677	24745	24918	32980	32980					-0.025144943735199377
LSQCHHYF	8	Unmodified	_LSQCHHYF_					0	0	0			REV__nc|ENSG00000196338|Q9NZ94-3|NLGN3	REV__nc|ENSG00000196338|Q9NZ94-3|NLGN3	MSMS	A375_MHC_IP_R2	2	517.7055053710938	2	517.729269	1033.44399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.519	1	49.276	48.776	49.776	0.75737								0	0	0	0.16876	1	18220	18220		10.183	0	1		+		33879	22182	24746	24919	32981	32981					-0.07139898811283274
LSQEAGGPEV	10	Unmodified	_LSQEAGGPEV_					0	0	0		ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	MULTI-MSMS	A375_MHC_IP_R1	1	494.66290283203125	2	493.743096	985.47164	-0.30505	-0.00015061	-0.75012	-0.00037037	-1.0552	-0.00052098	493.74289447856376	102.62	0.50606	102.62	102.35	102.86	0					14	9	3	0	0	0	0.60556	1	37693	37693		20.454	1.0146	1	1316100			33880	1872	24747	24920	32982	32982					-0.021677170700399984
LSQEAGGPEV	10	Unmodified	_LSQEAGGPEV_					0	0	0		ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1424865722656	2	493.743096	985.47164	-0.44978	-0.00022207	-0.55858	-0.00027579	-1.0084	-0.00049787	493.7429514677396	101.97	0.50837	102.74	102.41	102.92	0.76428					15	9	2	0	0	0	0.76414	1	38660	38660		26.884	3.7352	1	1151300			33881	1872	24747	24920	32983	32983					-0.021677170700399984
LSQELAEDL	9	Unmodified	_LSQELAEDL_					0	0	0		SPTA1|p.S1313L|1|0.16|ENSG00000163554|chr1:158645553-158645553|G/A|missense_variant	SPTA1|p.S1313L|1|0.16|ENSG00000163554|chr1:158645553-158645553|G/A|missense_variant	SPTA1|p.S1313L|1|0.16|ENSG00000163554|chr1:158645553-158645553|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	509.166259765625	2	509.258579	1016.50261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.881	1	58.63	58.13	59.13	0.74894								0	0	0	0.15142	1	21891	21891		19.257	2.3147	1				33882	29241	24748	24921	32984	32984					-0.00498563755820669
LSQELFQQS	9	Unmodified	_LSQELFQQS_					0	0	0			REV__ENSG00000170122|ENST00000382500|FOXD4	REV__ENSG00000170122|ENST00000382500|FOXD4	MSMS	A375_MHC_IP_R2	2	540.2158813476562	2	540.272021	1078.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.329	1	32.048	31.548	32.548	0.71857								0	0	0	0.14357	1	11068	11068		28.495	0	1		+		33883	20967	24749	24922	32985	32985					-0.006634551446268233
LSQERIIQF	9	Unmodified	_LSQERIIQF_					0	0	0		ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ;nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ;ENST00000411556.2_1_9:44472681-44473188:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	567.678955078125	2	567.319306	1132.62406	-0.13702	-7.7732E-05	-2.0558	-0.0011663	-2.1928	-0.001244	567.317964396763	71.852	0.65462	71.852	71.565	72.22	0					21	12	2	0	0	0	0.10495	1	26142	26142		65.474	23.518	1	4635400			33884	7274	24750	24923	32986	32986					0.06305103397380662
LSQERIIQF	9	Unmodified	_LSQERIIQF_					0	0	0		ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ;nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ;ENST00000411556.2_1_9:44472681-44473188:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	567.319306	1132.62406	-0.52065	-0.00029537	-1.6567	-0.00093986	-2.1773	-0.0012352	567.3185854362374	71.025	0.6081	71.759	71.503	72.111	0.73421	-0.046496	8.2735E-05	NaN	65.474	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6270300			33885	7274	24750	24923							0.06305103397380662
LSQETVCEE	9	Unmodified	_LSQETVCEE_					0	0	0			REV__ENSG00000172671|ENST00000344646|ZFAND4	REV__ENSG00000172671|ENST00000344646|ZFAND4	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1694946289062	2	519.226422	1036.43829	-0.27046	-0.00014043	-2.165	-0.0011241	-2.4354	-0.0012645	519.2261272686018	107.95	0.30483	107.95	107.75	108.05	0					7	5	2	0	0	0	0.67483	1	39586	39586		14.838	2.3067	1	718280	+		33886	21162	24751	24924	32987	32987					-0.07847086904257594
LSQFFILLLII	11	Unmodified	_LSQFFILLLII_					0	0	0		ENST00000497404.1_1_1:111436939-111441814:+|nuORF	ENST00000497404.1_1_1:111436939-111441814:+|nuORF	ENST00000497404.1_1_1:111436939-111441814:+|nuORF	MSMS	A375_MHC_IP_R1	1	660.5011596679688	2	660.4205	1318.82645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.697	1	74.697	74.197	75.197	0								0	0	0	0.16334	1	27209	27209		1.3295	0	1				33887	12743	24752	24925	32988	32988					0.1797861375011962
LSQFGYRWV	9	Unmodified	_LSQFGYRWV_					0	0	0			REV__PCYOX1|p.R151C|1|0.22|ENSG00000116005|chr2:70261343-70261343|C/T|missense_variant	REV__PCYOX1|p.R151C|1|0.22|ENSG00000116005|chr2:70261343-70261343|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	386.2695617675781	3	385.869703	1154.58728	-0.39095	-0.00015085	0.064199	2.4773E-05	-0.32675	-0.00012608	385.86971000345085	51.715	0.40718	52.467	52.27	52.677	0.75225					12	7	2	0	0	0	0.7235	1	19500	19500		4.897	0	1	1939300	+		33888	17930	24753	24926	32989	32989					0.01616851571452571
LSQFHPEKL	9	Unmodified	_LSQFHPEKL_					0	0	0			REV__ENSG00000105926|ENST00000222644|PALS2	REV__ENSG00000105926|ENST00000222644|PALS2	MULTI-SECPEP	A375_MHC_IP_R1	1	366.64483642578125	3	366.869591	1097.58694	0.0036124	1.3253E-06	1.4975	0.00054937	1.5011	0.0005507	366.8698634344402	36.542	0.7617	36.542	36.084	36.845	0					29	14	3	0	0	0	0.69504	1	12274	12274		2.4985	0	1	2904500	+		33889	17418	24754	24927	32990	32990					0.04205431851596586
LSQFKEGEK	9	Unmodified	_LSQFKEGEK_					0	0	0			REV__tr|U7SWY0|U7SWY0_FUSNUAmidohydrolase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01211PE=4SV=1	REV__tr|U7SWY0|U7SWY0_FUSNUAmidohydrolase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01211PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	533.9706420898438	2	533.282389	1064.55022	-1.0017	-0.00053418	-1.2968	-0.00069156	-2.2985	-0.0012257	533.281858041489	33.297	0.45909	34.049	33.686	34.146	0.75225					13	8	3	0	0	0	0.71341	1	11766	11766		13.042	0.80181	1	1832500	+		33890	28614	24755	24928	32991	32991					0.020531352350417365
LSQFNENPL	9	Unmodified	_LSQFNENPL_					0	0	0			REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	MULTI-MSMS	A375_MHC_IP_R1	1	531.2000732421875	2	531.266739	1060.51892	-0.80111	-0.0004256	0.32294	0.00017157	-0.47817	-0.00025404	531.2668024719471	29.084	1.2654	29.084	28.188	29.453	0					36	24	2	0	0	0	0.61998	1	9219	9219		13.906	0	1	2345300	+		33891	18698	24756	24929	32992	32992					-0.008914377990549838
LSQFNNRAIK	10	Unmodified	_LSQFNNRAIK_					0	0	0			REV__ENSG00000137473|ENST00000325106|TTC29	REV__ENSG00000137473|ENST00000325106|TTC29	MULTI-MSMS	A375_MHC_IP_R1	1	397.95947265625	3	397.559528	1189.65676	-0.033886	-1.3472E-05	0.61098	0.0002429	0.5771	0.00022943	397.55950725621796	35.179	0.509	35.179	34.963	35.472	0					22	9	4	0	0	0	0.36067	1	11690	11690		25.997	6.8535	1	6387500	+		33892	19008	24757	24930	32993	32993					0.06951310520207699
LSQFNNRAIK	10	Unmodified	_LSQFNNRAIK_					0	0	0			REV__ENSG00000137473|ENST00000325106|TTC29	REV__ENSG00000137473|ENST00000325106|TTC29	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	397.559528	1189.65676	-0.033886	-1.3472E-05	0.61098	0.0002429	0.5771	0.00022943	397.55950725621796	35.179	0.509	35.179	34.963	35.472	0	0.022549	0.00065476	NaN	25.997	22	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6387500	+		33893	19008	24757	24930							0.06951310520207699
LSQFNNRAIK	10	Unmodified	_LSQFNNRAIK_					0	0	0			REV__ENSG00000137473|ENST00000325106|TTC29	REV__ENSG00000137473|ENST00000325106|TTC29	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	397.559528	1189.65676	-0.3697	-0.00014698	-0.33112	-0.00013164	-0.70082	-0.00027862	397.5595297292711	34.382	0.40844	35.134	34.904	35.312	0.75225	-0.022549	-0.00046887	NaN	25.997	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4831300	+		33894	19008	24757	24930							0.06951310520207699
LSQHQPII	8	Unmodified	_LSQHQPII_					0	0	0		nc|ENSG00000187790|Q8IYD8-3|FANCM;ENSG00000187790|ENST00000267430|FANCM;nc|ENSG00000187790|Q8IYD8-2|FANCM	nc|ENSG00000187790|Q8IYD8-3|FANCM	nc|ENSG00000187790|Q8IYD8-3|FANCM	MULTI-SECPEP	A375_MHC_IP_R2	2	468.6629638671875	2	468.269084	934.523616	-0.88537	-0.00041459	0.67548	0.00031631	-0.20989	-9.8286E-05	468.2693683470594	49.346	0.30268	50.103	49.944	50.247	0.75736					9	5	2	0	0	0	0.69059	1	18480	18480		46.921	4.8263	1	1069700			33895	8857	24758	24931	32994	32994					0.05373491134378128
LSQISAELME	10	Unmodified	_LSQISAELME_					0	0	0		nc|ENSG00000293487|P0DO92|CDIPTOSP;ENST00000565014.5_2_16:29874917-29876497:+|nuORF	nc|ENSG00000293487|P0DO92|CDIPTOSP	nc|ENSG00000293487|P0DO92|CDIPTOSP	MULTI-SECPEP	A375_MHC_IP_R2	2	560.3824462890625	2	560.781364	1119.54818	-1.0172	-0.00057044	-4.1145	-0.0023073	-5.1317	-0.0028778	560.7776299093665	57.104	0.30816	57.854	57.712	58.02	0.75015					11	5	3	0	0	0	0.83355	1	21611	21611		22.736	5.2936	1	845210			33896	13542	24759	24932	32995	32995					-0.006816615650905078
LSQKGTQIPD	10	Unmodified	_LSQKGTQIPD_					0	0	0		ENSG00000156860|ENST00000356166|FBRS;nc|ENSG00000156860|Q9HAH7|FBRS;nc|ENSG00000156860|Q9HAH7-1|FBRS	ENSG00000156860|ENST00000356166|FBRS	ENSG00000156860|ENST00000356166|FBRS	MULTI-SECPEP	A375_MHC_IP_R1	1	543.6619873046875	2	543.793121	1085.57169	-0.74654	-0.00040597	-0.087512	-4.7589E-05	-0.83406	-0.00045355	544.2932815626242	91.115	0.35303	91.115	90.946	91.299	0					8	6	2	0	0	0	0.83447	1	33470	33470		13.615	2.1202	1	1357100			33897	6212	24760	24933	32996	32996					0.032325202637593975
LSQKGTQIPD	10	Unmodified	_LSQKGTQIPD_					0	0	0		ENSG00000156860|ENST00000356166|FBRS;nc|ENSG00000156860|Q9HAH7|FBRS;nc|ENSG00000156860|Q9HAH7-1|FBRS	ENSG00000156860|ENST00000356166|FBRS	ENSG00000156860|ENST00000356166|FBRS	MULTI-MATCH	A375_MHC_IP_R2	2		2	543.793121	1085.57169	-0.71851	-0.00039072	2.2164	0.0012052	1.4979	0.00081453	544.2957577251303	90.041	0.5107	90.773	90.493	91.004	0.7318	-0.1709	0.00058046	NaN	13.615	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1076300			33898	6212	24760	24933							0.032325202637593975
LSQKKADPY	9	Unmodified	_LSQKKADPY_					0	0	0			REV__SLC22A14|p.R167Q|1|0.48|ENSG00000144671|chr3:38306526-38306526|G/A|missense_variant	REV__SLC22A14|p.R167Q|1|0.48|ENSG00000144671|chr3:38306526-38306526|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	525.133056640625	2	525.284931	1048.55531	-0.58429	-0.00030692	0.59815	0.0003142	0.013858	7.2794E-06	525.7866040937322	65.335	0.40861	65.335	65.105	65.514	0					12	7	2	0	0	0	0.3213	1	23687	23687		37.974	26.334	1	1775000	+		33899	27978	24761	24934	32997	32997					0.032974390976505674
LSQKKADPY	9	Unmodified	_LSQKKADPY_					0	0	0			REV__SLC22A14|p.R167Q|1|0.48|ENSG00000144671|chr3:38306526-38306526|G/A|missense_variant	REV__SLC22A14|p.R167Q|1|0.48|ENSG00000144671|chr3:38306526-38306526|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	524.6949462890625	2	525.284931	1048.55531	-0.41082	-0.0002158	-1.0101	-0.00053058	-1.4209	-0.00074637	525.2842646292721	64.407	0.30549	65.147	64.954	65.259	0.74022					9	5	2	0	0	0	0.58271	1	24417	24417		14.838	0	1	1155600	+		33900	27978	24761	24934	32998	32998					0.032974390976505674
LSQKKQKKRRF	11	Unmodified	_LSQKKQKKRRF_					0	0	0		ENST00000515800.6_1_5:86682715-86685204:+|nuORF	ENST00000515800.6_1_5:86682715-86685204:+|nuORF	ENST00000515800.6_1_5:86682715-86685204:+|nuORF	MSMS	A375_MHC_IP_R1	1	723.9564819335938	2	723.954427	1445.8943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.535	1	63.535	63.035	64.035	0								0	0	0	0.16334	1	22967	22967		1.3295	0	1				33901	12957	24762	24935	32999	32999					0.18918876453426492
LSQKLEELQR	10	Unmodified	_LSQKLEELQR_					0	0	0		ENSG00000136935|ENST00000373555|GOLGA1	ENSG00000136935|ENST00000373555|GOLGA1	ENSG00000136935|ENST00000373555|GOLGA1	MULTI-MSMS	A375_MHC_IP_R1	1	415.63885498046875	3	415.238343	1242.6932	0.41813	0.00017363	0.34216	0.00014208	0.76029	0.0003157	415.2385352715669	20.48	0.45791	20.48	20.18	20.638	0					14	8	2	0	0	0	0.71076	1	5274	5274		7.4771	1.9538	1	1228700			33902	4843	24763	24936	33000	33000					0.08156142626262408
LSQKTLLSY	9	Unmodified	_LSQKTLLSY_					0	0	0		ENST00000481118.1_1_10:915951-931670:-|nuORF	ENST00000481118.1_1_10:915951-931670:-|nuORF	ENST00000481118.1_1_10:915951-931670:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	526.1331176757812	2	526.802957	1051.59136	-0.57451	-0.00030265	0.90933	0.00047904	0.33482	0.00017638	526.8033559493883	40.941	0.30081	40.941	40.762	41.063	0					9	5	2	0	0	0	0.69504	1	14084	14084		12.532	0	1	1902900			33903	12507	24764	24937	33001	33001					0.06762896274540253
LSQLLKQRLH	10	Unmodified	_LSQLLKQRLH_					0	0	0			REV__ENSG00000164125|ENST00000585682|GASK1B	REV__ENSG00000164125|ENST00000585682|GASK1B	MSMS	A375_MHC_IP_R2	2	618.4614868164062	2	618.382771	1234.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.77	1	102.53	102.03	103.03	0.76428								0	0	0	0.15531	1	38573	38573		3.5965	0.31518	1		+		33904	20455	24765	24938	33002	33002					0.14300449342363208
LSQLPILKPRF	11	Unmodified	_LSQLPILKPRF_					0	0	0		nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2	nc|ENSG00000007171|P35228-2|NOS2	nc|ENSG00000007171|P35228-2|NOS2	MSMS	A375_MHC_IP_R1	1	656.4993286132812	2	656.410998	1310.80744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.037	1	94.037	93.537	94.537	0								0	0	0	0.16213	1	34564	34564		7.609	1.8771	1				33905	936	24766	24939	33003	33003					0.1644707717903202
LSQLRYWQRAL	11	Unmodified	_LSQLRYWQRAL_					0	0	0			REV__ENST00000338564.9_1_15:37393130-37393349:-|nuORF	REV__ENST00000338564.9_1_15:37393130-37393349:-|nuORF	MSMS	A375_MHC_IP_R2	2	717.4050903320312	2	717.404235	1432.79392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.615	1	78.358	77.858	78.858	0.74293								0	0	0	0.16302	1	29473	29473		2.9952	0	1		+		33906	23700	24767	24940	33004	33004					0.0948321939977177
LSQLVLKRL	9	Unmodified	_LSQLVLKRL_					0	0	0			REV__ENST00000533210.5_1_8:144650334-144650907:-|nuORF	REV__ENST00000533210.5_1_8:144650334-144650907:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	357.6045227050781	3	357.241248	1068.70191	-0.24074	-8.6003E-05	-0.12943	-4.6238E-05	-0.37017	-0.00013224	357.24105891136094	32.328	0.30476	33.065	32.909	33.213	0.73691					11	5	3	0	0	0	0.54799	2	11512	11477;11512		17.443	0.87677	1	1117700	+		33907	22542	24768	24941	33005;33006	33006					0.1703116105340996
LSQLVLKRL	9	Unmodified	_LSQLVLKRL_					0	0	0			REV__ENST00000533210.5_1_8:144650334-144650907:-|nuORF	REV__ENST00000533210.5_1_8:144650334-144650907:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	357.241248	1068.70191	0.036793	1.3144E-05	-0.44809	-0.00016008	-0.4113	-0.00014693	357.24099518244896	33.387	0.35678	33.387	33.241	33.597	0	0.16079	-0.00017583	NaN	17.443	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1025700	+		33908	22542	24768	24941							0.1703116105340996
LSQLVNEEVT	10	Unmodified	_LSQLVNEEVT_					0	0	0			REV__nc|ENSG00000266200|P54317|PNLIPRP2	REV__nc|ENSG00000266200|P54317|PNLIPRP2	MULTI-MSMS	A375_MHC_IP_R2	2	378.9244689941406	3	377.867916	1130.58192	-0.17067	-6.4491E-05	-3.5706	-0.0013492	-3.7413	-0.0014137	377.8646018165045	51.883	0.6117	52.635	52.321	52.932	0.75225					38	11	5	0	0	0	0.70312	1	19556	19556		10.899	4.7071	1	6351700	+		33909	27538	24769	24942	33007	33007					0.021850831983329044
LSQPAEASSN	10	Unmodified	_LSQPAEASSN_					0	0	0			REV__nc|ENSG00000165626|Q8N7W2-3|BEND7	REV__nc|ENSG00000165626|Q8N7W2-3|BEND7	MULTI-MSMS	A375_MHC_IP_R1	1	502.6597900390625	2	502.238178	1002.4618	-0.3786	-0.00019015	1.3549	0.0006805	0.97634	0.00049036	502.2388027575315	74.242	0.60777	74.242	73.843	74.451	0					13	11	2	0	0	0	0.63639	1	27076	27076		18.146	3.5647	1	734370	+		33910	27332	24770	24943	33008	33008					-0.03932905075430426
LSQPKIVKW	9	Unmodified	_LSQPKIVKW_					0	0	0		ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-SECPEP	A375_MHC_IP_R1	1	366.6449890136719	3	366.893848	1097.65972	0.71026	0.00026059	-0.13829	-5.0737E-05	0.57197	0.00020985	366.89371082406706	48.8	0.45663	48.8	48.526	48.983	0					17	8	3	0	0	0	0.31606	1	17244	17244		19.626	17.54	1	3545400			33911	7105	24771	24944	33009	33009					0.11479185645021062
LSQPSKEVH	9	Unmodified	_LSQPSKEVH_					0	0	0			REV__nc|ENSG00000106009|Q6PJG6-3|BRAT1	REV__nc|ENSG00000106009|Q6PJG6-3|BRAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	512.9775390625	2	512.774731	1023.53491	-0.33481	-0.00017168	0.16047	8.2284E-05	-0.17434	-8.9398E-05	512.774588345384	20.695	0.61232	20.695	20.384	20.997	0					16	11	2	0	0	0	0.79535	1	5413	5413		6.2058	0.47393	1	1413200	+		33912	17425	24772	24945	33010	33010					0.02408268437852712
LSQQDHKFI	9	Unmodified	_LSQQDHKFI_					0	0	0		ENST00000484212.5_1_7:115624506-115750814:-|nuORF	ENST00000484212.5_1_7:115624506-115750814:-|nuORF	ENST00000484212.5_1_7:115624506-115750814:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	559.0387573242188	2	558.29583	1114.57711	-0.68429	-0.00038204	2.5467	0.0014218	1.8624	0.0010398	558.2971830989025	126.52	0.20165	126.81	126.73	126.93	0.2951					7	3	3	0	0	0	0.46045	1	49556	49556		29.082	5.061	1	8715500			33913	12558	24773	24946	33011	33011					0.024402438462402642
LSQQLFEH	8	Unmodified	_LSQQLFEH_					0	0	0			REV__nc|ENSG00000112282|Q9ULK4-2|MED23	REV__nc|ENSG00000112282|Q9ULK4-2|MED23	MULTI-MSMS	A375_MHC_IP_R1	1	501.1927185058594	2	501.256174	1000.49779	-0.37169	-0.00018631	1.0559	0.00052928	0.68421	0.00034296	501.25617156828656	57.612	0.50871	57.612	57.364	57.873	0					31	9	5	0	0	0	0.76248	1	20690	20690		16.942	0	1	3520700	+		33914	17723	24774	24947	33012	33012					-0.0024340310790194053
LSQQLFEH	8	Unmodified	_LSQQLFEH_					0	0	0			REV__nc|ENSG00000112282|Q9ULK4-2|MED23	REV__nc|ENSG00000112282|Q9ULK4-2|MED23	MULTI-SECPEP	A375_MHC_IP_R1	1	501.6561584472656	2	501.256174	1000.49779	-0.37169	-0.00018631	1.0559	0.00052928	0.68421	0.00034296	501.25617156828656	57.612	0.50871	57.612	57.364	57.873	0					31	9	5	0	0	0	0.96266	1	20655	20655		11.64	4.3511	1	3520700	+		33915	17723	24774	24947	33013	33013					-0.0024340310790194053
LSQQLFEH	8	Unmodified	_LSQQLFEH_					0	0	0			REV__nc|ENSG00000112282|Q9ULK4-2|MED23	REV__nc|ENSG00000112282|Q9ULK4-2|MED23	MULTI-SECPEP	A375_MHC_IP_R2	2	501.1924133300781	2	501.256174	1000.49779	-1.0394	-0.00052098	-0.26704	-0.00013386	-1.3064	-0.00065484	501.25615766056796	56.785	0.76606	57.535	57.152	57.918	0.75015					25	14	3	0	0	0	0.92636	1	21467	21467		16.942	5.302	1	4242700	+		33916	17723	24774	24947	33014	33014					-0.0024340310790194053
LSQRGYEW	8	Unmodified	_LSQRGYEW_					0	0	0		nc|ENSG00000171791|P10415-2|BCL2;ENSG00000171791|ENST00000333681|BCL2	nc|ENSG00000171791|P10415-2|BCL2	nc|ENSG00000171791|P10415-2|BCL2	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1867065429688	2	519.753798	1037.49304	-0.88003	-0.0004574	-0.073421	-3.8161E-05	-0.95345	-0.00049556	519.7535121339195	41.528	0.40902	41.528	41.368	41.777	0					9	7	2	0	0	0	0.96266	1	14346	14346		3.9444	1.6417	1	1159900			33917	7638	24775	24948	33015	33015					-0.024202872506748463
LSQRHGVSIF	10	Unmodified	_LSQRHGVSIF_					0	0	0			REV__ENST00000553745.5_1_14:74753379-74769587:-|nuORF	REV__ENST00000553745.5_1_14:74753379-74769587:-|nuORF	MSMS	A375_MHC_IP_R1	1	381.94525146484375	3	381.88049	1142.61964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.178	1	41.178	40.678	41.678	0								0	0	0	0.15225	1	14202	14202		13.519	1.3439	1		+		33918	18086	24776	24949	33016	33016					0.0540363897446241
LSQRPDKKF	9	Unmodified	_LSQRPDKKF_					0	0	0			REV__ENSG00000130758|ENST00000253055|MAP3K10	REV__ENSG00000130758|ENST00000253055|MAP3K10	MULTI-SECPEP	A375_MHC_IP_R2	2	374.2767639160156	3	373.548741	1117.62439	0.13972	5.2192E-05	-0.36071	-0.00013474	-0.22099	-8.2551E-05	373.5484993118948	51.651	0.91468	52.403	52.169	53.083	0.75225					29	17	3	0	0	0	0.58271	1	19553	19553		14.405	4.2548	1	12450000	+		33919	18562	24777	24950	33017	33017					0.07028523117219265
LSQRSLFKF	9	Unmodified	_LSQRSLFKF_					0	0	0		ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	MULTI-SECPEP	A375_MHC_IP_R2	2	375.52593994140625	3	375.885353	1124.63423	0.1339	5.0331E-05	0.19617	7.3736E-05	0.33007	0.00012407	375.88535004322705	55.882	0.45799	56.632	56.287	56.745	0.75014					12	8	2	0	0	0	0.80101	1	21066	21066		5.2969	0	1	1496600			33920	7552	24778	24951	33018	33018					0.0768971112258896
LSQRSLFKF	9	Unmodified	_LSQRSLFKF_					0	0	0		ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	MULTI-MATCH	A375_MHC_IP_R1	1		3	375.885353	1124.63423	0.41757	0.00015696	0.38558	0.00014493	0.80314	0.00030189	375.8854979677294	56.837	0.40861	56.837	56.65	57.059	0	0.10249	0.00012041	NaN	5.2969	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1121500			33921	7552	24778	24951							0.0768971112258896
LSQRTTILL	9	Unmodified	_LSQRTTILL_					0	0	0			REV__ENSG00000084444|ENST00000197268|FAM234B	REV__ENSG00000084444|ENST00000197268|FAM234B	MULTI-SECPEP	A375_MHC_IP_R2	2	523.223388671875	2	522.824224	1043.63389	-0.50549	-0.00026428	-0.50654	-0.00026483	-1.012	-0.00052911	522.8239610519464	63.63	0.61038	64.37	63.987	64.597	0.74022					30	11	4	0	0	0	0.16676	1	24069	24069		58.679	4.846	1	12509000	+		33922	16820	24779	24952	33019	33019					0.11382291402765077
LSQSHLTRPVW	11	Unmodified	_LSQSHLTRPVW_					0	0	0		ENST00000373998.5_1_X:70474497-70474767:-|nuORF	ENST00000373998.5_1_X:70474497-70474767:-|nuORF	ENST00000373998.5_1_X:70474497-70474767:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	441.6166687011719	3	441.910449	1322.70952	-0.36518	-0.00016138	0.12636	5.5842E-05	-0.23882	-0.00010554	441.9103585777435	30.674	0.25083	31.392	31.216	31.467	0.71857					6	4	2	0	0	0	0.99916	1	10805	10805		2.4348	0	1	1060300			33923	11245	24780	24953	33020	33020					0.061072685830367845
LSQSLHLQF	9	Unmodified	_LSQSLHLQF_					0	0	0		ENST00000529940.5_1_11:8752463-8832809:-|nuORF	ENST00000529940.5_1_11:8752463-8832809:-|nuORF	ENST00000529940.5_1_11:8752463-8832809:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1923828125	2	536.792924	1071.57129	-0.85653	-0.00045978	-0.43656	-0.00023434	-1.2931	-0.00069412	536.7929875222	67.518	0.6104	68.255	68.001	68.612	0.73631					20	11	3	0	0	0	0.23894	1	25574	25574		61.357	17.499	1	3724200			33924	13140	24781	24954	33021	33021					0.03837145334568959
LSQSLKGWDY	10	Unmodified	_LSQSLKGWDY_					0	0	0		HFE|p.H96Y|1|0.2|ENSG00000010704|chr6:26091050-26091050|C/T|missense_variant	HFE|p.H96Y|1|0.2|ENSG00000010704|chr6:26091050-26091050|C/T|missense_variant	HFE|p.H96Y|1|0.2|ENSG00000010704|chr6:26091050-26091050|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	598.6624145507812	2	598.800946	1195.58734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.039	1	98.799	98.299	99.299	0.75977								0	0	0	0.15207	1	37201	37201		13.906	3.0821	1				33925	14120	24782	24955	33022	33022					-0.0026319321918890637
LSQTFSDFS	9	Unmodified	_LSQTFSDFS_					0	0	0			REV__nc|ENSG00000196188|P14091-2|CTSE	REV__nc|ENSG00000196188|P14091-2|CTSE	MSMS	A375_MHC_IP_R1	1	516.1380615234375	2	516.237647	1030.46074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.16	1	31.16	30.66	31.66	0								0	0	0	0.1535	1	9961	9961		15.847	1.0089	1		+		33926	27435	24783	24956	33023	33023					-0.053271194443368586
LSQVKARPL	9	Unmodified	_LSQVKARPL_					0	0	0			REV__ENSG00000178015|ENST00000380007|GPR150	REV__ENSG00000178015|ENST00000380007|GPR150	MULTI-MSMS	A375_MHC_IP_R2	2	506.6957092285156	2	506.319109	1010.62366	-0.68403	-0.00034634	-0.37838	-0.00019158	-1.0624	-0.00053792	506.3189273065652	70.232	1.9248	70.966	70.591	72.516	0.73421					75	37	5	0	0	0	0.64808	1	26526	26526		11.64	1.4569	1	37306000	+		33927	21479	24784	24957	33024	33024					0.11877728468175519
LSQWPLLPQ	9	Unmodified	_LSQWPLLPQ_					0	0	0		nc|ENSG00000142224|Q9UHD0-3|IL19	nc|ENSG00000142224|Q9UHD0-3|IL19	nc|ENSG00000142224|Q9UHD0-3|IL19	MULTI-SECPEP	A375_MHC_IP_R1	1	540.6812133789062	2	541.305667	1080.59678	-0.56929	-0.00030816	-3.3832	-0.0018313	-3.9525	-0.0021395	541.8035768684252	93.625	0.55991	93.625	93.381	93.941	0					14	10	2	0	0	0	0.49205	1	34337	34337		21.537	11.463	1	4448800			33928	14650	24785	24958	33025	33025					0.059706198569983826
LSRAARGPLES	11	Unmodified	_LSRAARGPLES_					0	0	0			REV__ENST00000555019.5_2_14:94442850-94442979:-|nuORF	REV__ENST00000555019.5_2_14:94442850-94442979:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	386.2861328125	3	386.219283	1155.63602	-0.26141	-0.00010096	3.3429	0.0012911	3.0815	0.0011901	386.2201113686439	30.156	0.30518	30.875	30.759	31.064	0.71857					7	5	2	0	0	0	0.73135	1	10629	10629		3.8459	0.25323	1	894140	+		33929	26089	24786	24959	33026	33026					0.06442720140557867
LSRAARMARI	10	Unmodified	_LSRAARMARI_					0	0	0			REV__nc|ENSG00000135870|Q5TC82-2|RC3H1	REV__nc|ENSG00000135870|Q5TC82-2|RC3H1	MULTI-SECPEP	A375_MHC_IP_R2	2	381.6022644042969	3	382.229237	1143.66588	-0.43944	-0.00016797	-0.68083	-0.00026023	-1.1203	-0.0004282	382.5641583087258	22.83	0.35708	23.46	23.215	23.572	0.63014					8	6	2	0	0	0	0.93594	1	7202	7202		2.6312	2.0044	1	1784400	+		33930	18893	24787	24960	33027	33027					0.09979380604886501
LSRAARMARI	10	Unmodified	_LSRAARMARI_					0	0	0			REV__nc|ENSG00000135870|Q5TC82-2|RC3H1	REV__nc|ENSG00000135870|Q5TC82-2|RC3H1	MULTI-MATCH	A375_MHC_IP_R1	1		3	382.229237	1143.66588	0.10996	4.2031E-05	-3.0149	-0.0011524	-2.9049	-0.0011103	382.2280405545777	23.406	0.20485	23.406	23.278	23.483	0	-0.027251	-2.4156E-05	NaN	2.6312	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4792900	+		33931	18893	24787	24960							0.09979380604886501
LSRAELRL	8	Unmodified	_LSRAELRL_					0	0	0		ENSG00000105329|ENST00000221930|TGFB1	ENSG00000105329|ENST00000221930|TGFB1	ENSG00000105329|ENST00000221930|TGFB1	MULTI-MSMS	A375_MHC_IP_R1	1	479.6957092285156	2	479.295633	956.576714	-0.44055	-0.00021115	-0.031924	-1.5301E-05	-0.47247	-0.00022646	479.2956066353619	43.98	0.35697	43.98	43.808	44.165	0					15	6	3	0	0	0	0.76248	1	15329	15329		16.942	0	1	5302900			33932	2591	24788	24961	33028	33028					0.09668868917015061
LSRAELRL	8	Unmodified	_LSRAELRL_					0	0	0		ENSG00000105329|ENST00000221930|TGFB1	ENSG00000105329|ENST00000221930|TGFB1	ENSG00000105329|ENST00000221930|TGFB1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	479.295633	956.576714	-0.44055	-0.00021115	-0.031924	-1.5301E-05	-0.47247	-0.00022646	479.2956066353619	43.98	0.35697	43.98	43.808	44.165	0	0.12819	-7.0654E-05	NaN	16.942	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5302900			33933	2591	24788	24961							0.09668868917015061
LSRAIHLQPD	10	Unmodified	_LSRAIHLQPD_					0	0	0		ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	MULTI-SECPEP	A375_MHC_IP_R2	2	575.2186889648438	2	575.32238	1148.63021	-0.74805	-0.00043037	-2.9926	-0.0017217	-3.7406	-0.0021521	575.3197897187601	53.547	0.46019	54.298	53.893	54.353	0.75105					9	8	2	0	0	0	0.90144	1	20229	20229		13.615	7.883	1	1911400			33934	5115	24789	24962	33029	33029					0.061836216289066215
LSRARDHLQLC	11	Unmodified	_LSRARDHLQLC_					0	0	0			REV__ENSG00000115488|ENST00000233840|NEU2	REV__ENSG00000115488|ENST00000233840|NEU2	MULTI-MSMS	A375_MHC_IP_R1	1	438.30279541015625	3	437.903189	1310.68774	-0.29451	-0.00012897	-0.47992	-0.00021016	-0.77443	-0.00033912	437.90294906314006	41.04	0.45339	41.04	40.813	41.266	0					24	8	4	0	0	0	0.65093	1	14146	14146		11.631	2.8796	1	8643200	+		33935	17892	24790	24963	33030	33030					0.044821405628226785
LSRARDHLQLC	11	Unmodified	_LSRARDHLQLC_					0	0	0			REV__ENSG00000115488|ENST00000233840|NEU2	REV__ENSG00000115488|ENST00000233840|NEU2	MULTI-MSMS	A375_MHC_IP_R2	2	438.3028259277344	3	437.903189	1310.68774	-0.35731	-0.00015647	-0.36919	-0.00016167	-0.7265	-0.00031814	437.9029810523977	40.174	0.45647	40.949	40.777	41.234	0.77451					23	8	4	0	0	0	0.71476	1	14880	14880		8.2864	1.663	1	7682900	+		33936	17892	24790	24963	33031	33031					0.044821405628226785
LSRARDHLQLC	11	Unmodified	_LSRARDHLQLC_					0	0	0			REV__ENSG00000115488|ENST00000233840|NEU2	REV__ENSG00000115488|ENST00000233840|NEU2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	437.903189	1310.68774	-0.29451	-0.00012897	-0.47992	-0.00021016	-0.77443	-0.00033912	437.90294906314006	41.04	0.45339	41.04	40.813	41.266	0	0.045597	-6.8722E-05	NaN	11.631	24	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8643200	+		33937	17892	24790	24963							0.044821405628226785
LSRARDHLQLC	11	Unmodified	_LSRARDHLQLC_					0	0	0			REV__ENSG00000115488|ENST00000233840|NEU2	REV__ENSG00000115488|ENST00000233840|NEU2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	437.903189	1310.68774	-0.35731	-0.00015647	-0.36919	-0.00016167	-0.7265	-0.00031814	437.9029810523977	40.174	0.45647	40.949	40.777	41.234	0.77451	-0.045597	7.6741E-05	NaN	11.631	23	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7682900	+		33938	17892	24790	24963							0.044821405628226785
LSRARSINV	9	Unmodified	_LSRARSINV_					0	0	0		MYO18B|p.T2180I|1|0.5|ENSG00000133454|chr22:26026513-26026513|C/T|missense_variant	MYO18B|p.T2180I|1|0.5|ENSG00000133454|chr22:26026513-26026513|C/T|missense_variant	MYO18B|p.T2180I|1|0.5|ENSG00000133454|chr22:26026513-26026513|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	508.2133483886719	2	508.30399	1014.59343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.588	1	79.333	78.833	79.833	0.74474								0	0	0	0.14677	1	29843	29843		26.884	5.3467	1				33939	14438	24791	24964	33032	33032					0.08671369802982554
LSRAWGVSR	9	Unmodified	_LSRAWGVSR_					0	0	0			REV__ENST00000563051.1_1_16:781392-781641:-|nuORF	REV__ENST00000563051.1_1_16:781392-781641:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	515.69140625	2	516.290882	1030.56721	-1.1934	-0.00061615	3.7883	0.0019558	2.5948	0.0013397	516.2932311079227	33.52	0.5581	34.272	33.942	34.5	0.75225					14	10	2	0	0	0	0.67483	1	12014	12014		14.838	0	1	4234600	+		33940	26201	24792	24965	33033	33033					0.05315100631491987
LSRCWHLEHL	10	Unmodified	_LSRCWHLEHL_					0	0	0		ENST00000555003.5_1_9:34658586-34660388:+|nuORF	ENST00000555003.5_1_9:34658586-34660388:+|nuORF	ENST00000555003.5_1_9:34658586-34660388:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	431.1529846191406	3	431.88888	1292.64481	-0.069059	-2.9826E-05	4.3538	0.0018804	4.2847	0.0018505	431.8916444194581	62.979	0.46114	62.979	62.762	63.223	0					11	8	2	0	0	0	0.93615	1	22676	22676		0.69767	0	1	739200			33941	13426	24793	24966	33034	33034					0.010193705054007296
LSRDKKVLVPV	11	Unmodified	_LSRDKKVLVPV_					0	0	0		RIC8B|p.P316*|1|0.32|ENSG00000111785|chr12:106842697-106842701|GCCCA/-|frameshift_variant;nc|ENSG00000111785|Q9NVN3-3|RIC8B;nc|ENSG00000111785|Q9NVN3|RIC8B;nc|ENSG00000111785|Q9NVN3-1|RIC8B;ENSG00000111785|ENST00000392837|RIC8B	RIC8B|p.P316*|1|0.32|ENSG00000111785|chr12:106842697-106842701|GCCCA/-|frameshift_variant	RIC8B|p.P316*|1|0.32|ENSG00000111785|chr12:106842697-106842701|GCCCA/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	627.4144287109375	2	627.40063	1252.78671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.48	1	74.215	73.715	74.715	0.73541								0	0	0	0.16297	1	27890	27890		3.2813	0.28607	1				33942	3027	24794	24967	33035	33035					0.1704248679934608
LSRDQGTFTS	10	Unmodified	_LSRDQGTFTS_					0	0	0		ENST00000374994.8_2_9:101915404-101915491:+|nuORF	ENST00000374994.8_2_9:101915404-101915491:+|nuORF	ENST00000374994.8_2_9:101915404-101915491:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	555.6681518554688	2	556.272552	1110.53055	-0.57638	-0.00032063	1.095	0.00060912	0.51863	0.0002885	556.2729714448061	46.37	0.35086	46.37	46.195	46.545	0					9	6	2	0	0	0	0.70528	1	16284	16284		26.268	8.1218	1	1013400			33943	11264	24795	24968	33036	33036					-0.020292407757096953
LSRDQVRLL	9	Unmodified	_LSRDQVRLL_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	A375_MHC_IP_R1	1	550.6867065429688	2	550.332747	1098.65094	-0.8899	-0.00048974	0.47778	0.00026294	-0.41212	-0.0002268	550.3329617303655	68.285	0.661	68.285	67.955	68.616	0					29	12	3	0	0	0	0.57806	1	24762	24762		20.415	3.3016	1	10889000			33944	7983	24796	24969	33037	33037					0.10556212008555121
LSRDQVRLL	9	Unmodified	_LSRDQVRLL_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	A375_MHC_IP_R2	2	550.732666015625	2	550.332747	1098.65094	-0.79019	-0.00043487	0.029881	1.6445E-05	-0.76031	-0.00041842	550.3327263615668	67.327	0.60938	68.063	67.75	68.359	0.73631					32	11	4	0	0	0	0.656	1	25461	25461		26.268	3.5319	1	11721000			33945	7983	24796	24969	33038	33038					0.10556212008555121
LSRDVAKQL	9	Unmodified	_LSRDVAKQL_					0	0	0			REV__nc|ENSG00000151746|Q96G01-4|BICD1	REV__nc|ENSG00000151746|Q96G01-4|BICD1	MULTI-SECPEP	A375_MHC_IP_R1	1	515.7061157226562	2	515.306198	1028.59784	-0.26749	-0.00013784	0.048159	2.4817E-05	-0.21933	-0.00011302	515.3061283365056	39.156	0.40752	39.156	38.933	39.34	0					18	7	3	0	0	0	0.0575	1	13338	13338		67.838	0	1	8317500	+		33946	19770	24797	24970	33039	33039					0.08468834225891442
LSREALIAL	9	Unmodified	_LSREALIAL_					0	0	0		ENSG00000185863|ENST00000413619|TMEM210	ENSG00000185863|ENST00000413619|TMEM210	ENSG00000185863|ENST00000413619|TMEM210	MULTI-SECPEP	A375_MHC_IP_R2	2	493.7049560546875	2	493.305667	984.596781	-0.28477	-0.00014048	-0.10912	-5.3832E-05	-0.39389	-0.00019431	493.305685709865	94.438	0.60818	95.183	94.818	95.426	0.74474					22	11	3	0	0	0	0.49205	1	35893	35893		21.537	0	1	1548500			33947	8699	24798	24971	33040	33040					0.10386619856978996
LSREGWVDSG	10	Unmodified	_LSREGWVDSG_					0	0	0			REV__ENSG00000253276|ENST00000523505|CCDC71L	REV__ENSG00000253276|ENST00000523505|CCDC71L	MSMS	A375_MHC_IP_R1	1	553.2002563476562	2	553.26727	1104.51999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.968	1	53.968	53.468	54.468	0								0	0	0	0.15372	1	19253	19253		8.7454	0	1		+		33948	22849	24799	24972	33041	33041					-0.028092234301539065
LSREKQPPI	9	Unmodified	_LSREKQPPI_					0	0	0		ENSG00000182481|ENST00000330459|KPNA2	ENSG00000182481|ENST00000330459|KPNA2	ENSG00000182481|ENST00000330459|KPNA2	MULTI-MSMS	A375_MHC_IP_R2	2	356.94866943359375	3	356.545108	1066.61349	-0.47047	-0.00016774	-0.3413	-0.00012169	-0.81177	-0.00028943	356.8795071612499	23.829	0.15289	24.459	24.384	24.537	0.63014					4	2	2	0	0	0	0.41409	1	7698	7698		17.443	3.2245	1	1315300			33949	8410	24800	24973	33042	33042					0.08285120742925756
LSRELFESW	9	Unmodified	_LSRELFESW_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-SECPEP	A375_MHC_IP_R2	2	584.1322021484375	2	583.795663	1165.57677	-0.33965	-0.00019828	-0.46492	-0.00027142	-0.80457	-0.0004697	583.7952619338731	89.891	0.41063	90.623	90.391	90.801	0.7318					12	7	2	0	0	0	0.5212	1	34244	34244		20.415	0	1	721300			33950	3576	24801	24974	33043	33043					0.0006082412637624657
LSRERWPLETC	11	Unmodified	_LSRERWPLETC_					0	0	0		ENST00000331222.5_2_8:1732883-1733240:+|nuORF	ENST00000331222.5_2_8:1732883-1733240:+|nuORF	ENST00000331222.5_2_8:1732883-1733240:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	695.0716552734375	2	695.350811	1388.68707	-0.64143	-0.00044602	0.68153	0.0004739	0.040104	2.7886E-05	695.349137399971	126.09	0.20363	126.38	126.23	126.43	0.2951					5	3	2	0	0	0	0.73135	1	49238	49238		7.609	0.50723	1	2660800			33951	10769	24802	24975	33044	33044					0.008273011231040073
LSREVQLY	8	Unmodified	_LSREVQLY_					0	0	0			REV__ENST00000550036.1_1_12:105556619-105558145:+|nuORF	REV__ENST00000550036.1_1_12:105556619-105558145:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	504.1115417480469	2	504.279649	1006.54475	-0.2598	-0.00013101	0.47262	0.00023833	0.21282	0.00010732	504.2799518021587	56.344	0.81126	56.344	55.687	56.498	0					23	15	3	0	0	0	0.95423	1	19992	19992		7.9102	1.187	1	1273600	+		33952	26031	24803	24976	33045	33045					0.041734564432204024
LSREVQLY	8	Unmodified	_LSREVQLY_					0	0	0			REV__ENST00000550036.1_1_12:105556619-105558145:+|nuORF	REV__ENST00000550036.1_1_12:105556619-105558145:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1112976074219	2	504.279649	1006.54475	-0.76505	-0.0003858	0.9885	0.00049848	0.22345	0.00011268	504.280124277939	55.502	0.86322	56.252	55.779	56.642	0.75075					20	16	2	0	0	0	0.95423	1	20910	20910		12.532	3.9383	1	1339300	+		33953	26031	24803	24976	33046	33046					0.041734564432204024
LSREWSWLW	9	Unmodified	_LSREWSWLW_					0	0	0			REV__ENST00000607221.1_1_6:76000883-76000985:+|nuORF	REV__ENST00000607221.1_1_6:76000883-76000985:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	421.9483337402344	3	421.548741	1261.62439	-0.22689	-9.5644E-05	-0.54046	-0.00022783	-0.76735	-0.00032348	421.5484286356369	36.476	0.6092	36.476	36.236	36.845	0					23	11	3	0	0	0	0.35581	1	12211	12211		19.362	0	1	3445600	+		33954	26547	24804	24977	33047	33047					0.004045231172312924
LSRFKKLKYLW	11	Unmodified	_LSRFKKLKYLW_					0	0	0		ENSG00000205858|ENST00000401542|LRRC72	ENSG00000205858|ENST00000401542|LRRC72	ENSG00000205858|ENST00000401542|LRRC72	MSMS	A375_MHC_IP_R2	2	494.68438720703125	3	494.63789	1480.89184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.063	1	46.828	46.328	47.328	0.76519								0	0	0	0.16297	1	17241	17241		1.3296	0.21989	1				33955	9531	24805	24978	33048	33048					0.1706302799580044
LSRFKPKRLIL	11	Unmodified	_LSRFKPKRLIL_					0	0	0			REV__ENST00000488146.5_1_1:68942617-68947320:-|nuORF	REV__ENST00000488146.5_1_1:68942617-68947320:-|nuORF	MSMS	A375_MHC_IP_R1	1	685.9526977539062	2	685.953364	1369.89217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.29	1	117.29	116.79	117.79	0								0	0	0	0.16354	1	43058	43058		0.30703	0	1		+		33956	15676	24806	24979	33049	33049					0.22202447715653761
LSRGDVSL	8	Unmodified	_LSRGDVSL_					0	0	0			REV__nc|ENSG00000130396|P55196-1|AFDN	REV__nc|ENSG00000130396|P55196-1|AFDN	MULTI-SECPEP	A375_MHC_IP_R2	2	424.1372375488281	2	423.737617	845.460681	-0.73496	-0.00031143	0.60439	0.0002561	-0.13057	-5.5329E-05	423.73785429745243	53.336	0.5114	54.087	53.842	54.353	0.75105					16	9	2	0	0	0	0.76996	1	20131	20131		36.127	2.0246	1	2951600	+		33957	18537	24807	24980	33050	33050					0.03176925346326698
LSRGHTTATT	10	Unmodified	_LSRGHTTATT_					0	0	0			REV__ENSG00000117983|ENST00000529681|MUC5B	REV__ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	A375_MHC_IP_R1	1	523.7054443359375	2	522.775262	1043.53597	-0.31873	-0.00016663	2.1933	0.0011466	1.8746	0.00097997	522.7771919916212	42.646	0.70795	42.646	42.285	42.993	0					27	13	3	0	0	0	0.70793	1	14665	14665		8.7454	1.4562	1	3474700	+		33958	18026	24808	24981	33051	33051					0.01594482806740416
LSRGLSPL	8	Unmodified	_LSRGLSPL_					0	0	0			REV__ENST00000600284.5_1_19:50490096-50500767:-|nuORF	REV__ENST00000600284.5_1_19:50490096-50500767:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	422.1579284667969	2	421.758352	841.502152	-0.11856	-5.0003E-05	-0.31198	-0.00013158	-0.43054	-0.00018158	421.75812862170494	77.004	0.66004	77.747	77.453	78.113	0.74293					25	12	3	0	0	0	0.46955	1	29223	29223		56.177	0	1	3700500	+		33959	17356	24809	24982	33052	33052					0.07506106105654453
LSRGRGGG	8	Unmodified	_LSRGRGGG_					0	0	0			REV__ENST00000453744.6_1_4:103747768-103748756:-|nuORF	REV__ENST00000453744.6_1_4:103747768-103748756:-|nuORF	MSMS	A375_MHC_IP_R2	2	380.11376953125	2	380.214643	758.414734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.511	1	77.251	76.751	77.751	0.74052								0	0	0	0.16876	1	29049	29049		7.2892	0	1		+		33960	23574	24810	24983	33053	33053					0.025863249547569467
LSRHILTH	8	Unmodified	_LSRHILTH_					0	0	0		ENST00000470606.5_1_13:28000472-28009731:+|nuORF;nc|ENSG00000122034|Q92664-2|GTF3A;ENSG00000122034|ENST00000381140|GTF3A	ENST00000470606.5_1_13:28000472-28009731:+|nuORF	ENST00000470606.5_1_13:28000472-28009731:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	977.2632446289062	1	976.568675	975.561398	0.36083	0.00035237	-2.2284	-0.0021762	-1.8676	-0.0018239	976.5708623901212	117.33	0.15111	117.33	117.21	117.36	0					4	2	2	0	0	0	0.972	1	43074	43074		2.3027	0	1	8535500			33961	3759	24811	24984	33054	33054					0.07264002119836732
LSRHLPQLW	9	Unmodified	_LSRHLPQLW_					0	0	0			REV__ENST00000376334.3_1_9:68455190-68455343:-|nuORF	REV__ENST00000376334.3_1_9:68455190-68455343:-|nuORF	MSMS	A375_MHC_IP_R1	1	383.91876220703125	3	383.889097	1148.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.132	1	37.132	36.632	37.632	0								0	0	0	0.15142	1	12494	12494		13.615	1.4401	1		+		33962	24141	24812	24985	33055	33055					0.07708533216737123
LSRHRRRRERE	11	Unmodified	_LSRHRRRRERE_					0	0	0			REV__LAD1|p.N36S|1|0.55|ENSG00000159166|chr1:201389235-201389235|T/C|missense_variant	REV__LAD1|p.N36S|1|0.55|ENSG00000159166|chr1:201389235-201389235|T/C|missense_variant	MSMS	A375_MHC_IP_R2	2	775.9453735351562	2	775.945987	1549.87742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.761	1	93.5	93	94	0.73902								0	0	0	0.16334	1	35272	35272		1.3295	0	1		+		33963	26914	24813	24986	33056	33056					0.12447768620177158
LSRIQELSF	9	Unmodified	_LSRIQELSF_					0	0	0		HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant;HTT|p.S2672Rfs*25|1|0.31|ENSG00000197386|chr4:3228913-3228913|T/-|frameshift_variant;ENSG00000197386|ENST00000355072|HTT;ENST00000510626.5_1_4:3131970-3189635:+|nuORF;HTT|p.S1702F|1|0.49|ENSG00000197386|chr4:3187766-3187766|C/T|missense_variant	HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant	HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	364.2633361816406	3	364.873113	1091.59751	-0.052364	-1.9106E-05	-0.71752	-0.0002618	-0.76989	-0.00028091	364.8728685624459	44.596	0.45674	45.365	45.035	45.492	0.7691					14	8	2	0	0	0	0.74412	1	16595	16595		3.8763	0	1	2351000			33964	9151	24814	24987	33057	33057					0.05537414506011373
LSRISFDRTTF	11	Unmodified	_LSRISFDRTTF_					0	0	0			REV__nc|ENSG00000126561|P42229-2|STAT5A	REV__nc|ENSG00000126561|P42229-2|STAT5A	MULTI-SECPEP	A375_MHC_IP_R1	1	447.64013671875	3	448.241976	1341.7041	-0.0019838	-8.8923E-07	-0.033939	-1.5213E-05	-0.035923	-1.6102E-05	448.57619238333086	51.978	0.55813	51.978	51.778	52.336	0					21	10	3	0	0	0	0.99732	1	18592	18592		4.1166	1.8639	1	2666100	+		33965	18388	24815	24988	33058	33058					0.046915450005371895
LSRITSIKL	9	Unmodified	_LSRITSIKL_					0	0	0			REV__ENST00000524747.1_1_11:31451062-31451257:+|nuORF	REV__ENST00000524747.1_1_11:31451062-31451257:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	516.2344360351562	2	515.834591	1029.65463	-1.031	-0.00053184	-0.24711	-0.00012747	-1.2781	-0.00065931	515.8344387025985	57.911	0.70844	58.66	58.427	59.135	0.74894					26	13	3	0	0	0	0.20451	1	21887	21887		49.554	0	1	7343400	+		33966	24331	24816	24989	33059	33059					0.140988817824109
LSRKAEEII	9	Unmodified	_LSRKAEEII_					0	0	0			REV__nc|ENSG00000150753|P48643-2|CCT5	REV__nc|ENSG00000150753|P48643-2|CCT5	MULTI-SECPEP	A375_MHC_IP_R1	1	353.9450378417969	3	353.544996	1057.61316	0.20125	7.1149E-05	0.40774	0.00014415	0.60898	0.0002153	353.54497702066385	45.509	0.40275	45.509	45.284	45.687	0					14	7	3	0	0	0	0.67483	1	15957	15957		6.6304	0	1	3058000	+		33967	19726	24817	24990	33060	33060					0.0866570102307378
LSRKGLEL	8	Unmodified	_LSRKGLEL_					0	0	0			REV__ENST00000371322.9_2_X:119660227-119660401:-|nuORF	REV__ENST00000371322.9_2_X:119660227-119660401:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	458.6844787597656	2	458.284734	914.554916	-0.70291	-0.00032213	0.12171	5.5776E-05	-0.58121	-0.00026636	458.28480329961343	38.386	0.50655	39.16	38.895	39.401	0.77451					20	9	3	0	0	0	0.62444	1	14112	14112		43.858	2.0187	1	6724400	+		33968	24043	24818	24991	33061	33061					0.09422064168461475
LSRKGLEL	8	Unmodified	_LSRKGLEL_					0	0	0			REV__ENST00000371322.9_2_X:119660227-119660401:-|nuORF	REV__ENST00000371322.9_2_X:119660227-119660401:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	458.284734	914.554916	-0.31078	-0.00014243	0.16412	7.5212E-05	-0.14666	-6.7213E-05	458.284784162633	39.466	0.55631	39.466	39.238	39.794	0	0.15274	1.7624E-05	NaN	43.858	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12611000	+		33969	24043	24818	24991							0.09422064168461475
LSRKGLEL	8	Unmodified	_LSRKGLEL_					0	0	0			REV__ENST00000371322.9_2_X:119660227-119660401:-|nuORF	REV__ENST00000371322.9_2_X:119660227-119660401:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	458.284734	914.554916	-0.70291	-0.00032213	0.12171	5.5776E-05	-0.58121	-0.00026636	458.28480329961343	38.386	0.50655	39.16	38.895	39.401	0.77451	-0.15274	-2.1249E-05	NaN	43.858	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6724400	+		33970	24043	24818	24991							0.09422064168461475
LSRKIYSGDY	10	Unmodified	_LSRKIYSGDY_					0	0	0		ENSG00000092445|ENST00000263798|TYRO3	ENSG00000092445|ENST00000263798|TYRO3	ENSG00000092445|ENST00000263798|TYRO3	MULTI-SECPEP	A375_MHC_IP_R1	1	401.1529235839844	3	401.211906	1200.61389	-0.24761	-9.9342E-05	1.6945	0.00067984	1.4469	0.0005805	401.2118708437497	40.691	0.45403	40.691	40.559	41.013	0					13	8	3	0	0	0	0.93961	1	14058	14058		0.56317	0	1	1530000			33971	2006	24819	24992	33062	33062					0.02160495672160323
LSRKKLPNH	9	Unmodified	_LSRKKLPNH_					0	0	0		ENST00000478383.5_1_3:160821891-160822176:-|nuORF;ENST00000460353.1_1_3:160821276-160822176:-|nuORF;ENST00000320474.8_1_3:160821276-160822176:-|nuORF	ENST00000478383.5_1_3:160821891-160822176:-|nuORF	ENST00000478383.5_1_3:160821891-160822176:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	547.2352294921875	2	546.835457	1091.65636	-0.81486	-0.0004456	0.14763	8.073E-05	-0.66723	-0.00036487	546.8355419897692	31.538	0.35706	32.257	32.026	32.383	0.71857					9	6	2	0	0	0	0.58271	1	11147	11147		26.884	0	1	3629800			33972	10691	24820	24993	33063	33063					0.11419935591038666
LSRKPGDR	8	Unmodified	_LSRKPGDR_					0	0	0		nc|ENSG00000135318|P21589-2|NT5E;ENSG00000135318|ENST00000257770|NT5E	nc|ENSG00000135318|P21589-2|NT5E	nc|ENSG00000135318|P21589-2|NT5E	MULTI-MSMS	A375_MHC_IP_R1	1	465.1697082519531	2	464.769783	927.525013	0.2387	0.00011094	-0.018158	-8.4395E-06	0.22054	0.0001025	464.7696725343882	114.34	3.0504	114.34	113.34	116.4	0					75	59	2	0	0	0	0.77624	2	41909	41720;41909		8.5933	3.8373	1	13534000			33973	4668	24821	24994	33064;33065	33065					0.05835125223131854
LSRKPGDR	8	Unmodified	_LSRKPGDR_					0	0	0		nc|ENSG00000135318|P21589-2|NT5E;ENSG00000135318|ENST00000257770|NT5E	nc|ENSG00000135318|P21589-2|NT5E	nc|ENSG00000135318|P21589-2|NT5E	MSMS	A375_MHC_IP_R2	2	465.1695556640625	2	464.769783	927.525013	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.54	1	116.23	115.73	116.73	0.68999								0	0	0	0.16876	1	43555	43555		8.5933	3.8373	1				33974	4668	24821	24994	33066	33066					0.05835125223131854
LSRLARTL	8	Unmodified	_LSRLARTL_					0	0	0			REV__ENST00000491898.5_1_6:43023672-43027146:-|nuORF	REV__ENST00000491898.5_1_6:43023672-43027146:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	465.6980895996094	2	465.298176	928.581799	-0.45873	-0.00021345	0.29477	0.00013715	-0.16397	-7.6294E-05	465.2982829012708	41.74	0.41093	41.74	41.521	41.932	0					16	7	3	0	0	0	0.8957	1	14436	14436		21.747	0	1	3453600	+		33975	17743	24822	24995	33067	33067					0.1146517277966268
LSRLEAAI	8	Unmodified	_LSRLEAAI_					0	0	0		ENSG00000167880|ENST00000301607|EVPL;EVPL|p.L1944Sfs*20|1|0.58|ENSG00000167880|chr17:76007376-76007376|C/-|frameshift_variant	ENSG00000167880|ENST00000301607|EVPL	ENSG00000167880|ENST00000301607|EVPL	MULTI-MSMS	A375_MHC_IP_R2	2	437.1541748046875	2	436.763635	871.512717	-0.46568	-0.00020339	-0.025955	-1.1336E-05	-0.49164	-0.00021473	436.7635854255416	65.637	0.50813	66.375	66.121	66.629	0.73811					16	9	2	0	0	0	0.7011	1	24841	24841		34.402	0	1	1804500			33976	7232	24823	24996	33068	33068					0.071820887600893
LSRLHLRLLLQ	11	Unmodified	_LSRLHLRLLLQ_					0	0	0		ENST00000299964.3_1_11:114166574-114166922:+|nuORF	ENST00000299964.3_1_11:114166574-114166922:+|nuORF	ENST00000299964.3_1_11:114166574-114166922:+|nuORF	MSMS	A375_MHC_IP_R2	2	681.6273193359375	2	681.440621	1360.86669	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.29	1	112.02	111.52	112.52	0.73692								0	0	0	0.16334	1	41963	41963		1.3295	0	1				33977	10533	24824	24997	33069	33069					0.20068973193224338
LSRLIVEERKR	11	Unmodified	_LSRLIVEERKR_					0	0	0		nc|ENSG00000182541|P53671-2|LIMK2;ENSG00000182541|ENST00000331728|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2;ENST00000482270.5_1_22:31668491-31671520:+|nuORF	nc|ENSG00000182541|P53671-2|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	MULTI-SECPEP	A375_MHC_IP_R2	2	700.3304443359375	2	699.930617	1397.84668	-0.69579	-0.00048701	1.6027	0.0011218	0.90689	0.00063476	699.9316544298528	123.48	0.45409	123.86	123.73	124.19	0.3766					9	8	2	0	0	0	0.99738	1	47474	47474		5.2969	3.9674	1	26484000			33978	8415	24825	24998	33070	33070					0.16367177462575455
LSRLKVYKLKH	11	Unmodified	_LSRLKVYKLKH_					0	0	0		EEFSEC|p.P465S|1|0.11|ENSG00000132394|chr3:128341839-128341839|C/T|missense_variant	EEFSEC|p.P465S|1|0.11|ENSG00000132394|chr3:128341839-128341839|C/T|missense_variant	EEFSEC|p.P465S|1|0.11|ENSG00000132394|chr3:128341839-128341839|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	692.905029296875	2	692.942996	1383.87144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.21	1	118.82	118.32	119.32	0.60909								0	0	0	0.16302	1	44864	44864		2.9952	0.49676	1				33979	823	24826	24999	33071	33071					0.19485857335962464
LSRLLAHM	8	Unmodified	_LSRLLAHM_					0	0	0		ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MSMS	A375_MHC_IP_R1	1	470.67181396484375	2	470.77348	939.532406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.66	1	130.66	130.16	131.16	0								0	0	0	0.16876	1	50315	50315		2.5775	0	1				33980	1572	24827	25000	33072	33072					0.06022141499192912
LSRLNEFLAG	10	Unmodified	_LSRLNEFLAG_					0	0	0		ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	MULTI-MSMS	A375_MHC_IP_R1	1	373.92437744140625	3	373.876746	1118.60841	0.30123	0.00011262	-0.1861	-6.958E-05	0.11512	4.3041E-05	374.21232664116866	24.906	0.1522	24.906	24.801	24.953	0					4	2	2	0	0	0	0.70179	1	7165	7165		7.0371	0	1	1700800			33981	7007	24828	25001	33073	33073					0.053848168803369845
LSRLRHRRRRK	11	Unmodified	_LSRLRHRRRRK_					0	0	0			REV__ENST00000492155.5_1_10:13749216-13749624:-|nuORF	REV__ENST00000492155.5_1_10:13749216-13749624:-|nuORF	MSMS	A375_MHC_IP_R1	1	511.9883728027344	3	511.997697	1532.97126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.294	1	35.294	34.794	35.794	0								0	0	0	0.16351	1	11730	11730		0.45452	0.45452	1		+		33982	25406	24829	25002	33074	33074					0.22609532513115482
LSRLRHRRRRK	11	Unmodified	_LSRLRHRRRRK_					0	0	0			REV__ENST00000492155.5_1_10:13749216-13749624:-|nuORF	REV__ENST00000492155.5_1_10:13749216-13749624:-|nuORF	MSMS	A375_MHC_IP_R1	1	511.9880065917969	3	511.997697	1532.97126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.46	1	41.46	40.96	41.96	0								0	0	0	0.16351	1	14313	14313		0.45452	0.45452	1		+		33983	25406	24829	25002	33075	33075					0.22609532513115482
LSRLRHRRRRK	11	Unmodified	_LSRLRHRRRRK_					0	0	0			REV__ENST00000492155.5_1_10:13749216-13749624:-|nuORF	REV__ENST00000492155.5_1_10:13749216-13749624:-|nuORF	MSMS	A375_MHC_IP_R1	1	511.9886474609375	3	511.997697	1532.97126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.953	1	42.953	42.453	43.453	0								0	0	0	0.16358	1	14909	14909		0.08335	0.08335	1		+		33984	25406	24829	25002	33076	33076					0.22609532513115482
LSRLRHRRRRK	11	Unmodified	_LSRLRHRRRRK_					0	0	0			REV__ENST00000492155.5_1_10:13749216-13749624:-|nuORF	REV__ENST00000492155.5_1_10:13749216-13749624:-|nuORF	MSMS	A375_MHC_IP_R1	1	511.98883056640625	3	511.997697	1532.97126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.246	1	43.246	42.746	43.746	0								0	0	0	0.16358	1	15024	15024		0.08335	0.08335	1		+		33985	25406	24829	25002	33077	33077					0.22609532513115482
LSRLRHRRRRK	11	Unmodified	_LSRLRHRRRRK_					0	0	0			REV__ENST00000492155.5_1_10:13749216-13749624:-|nuORF	REV__ENST00000492155.5_1_10:13749216-13749624:-|nuORF	MSMS	A375_MHC_IP_R1	1	511.98828125	3	511.997697	1532.97126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.624	1	43.624	43.124	44.124	0								0	0	0	0.16351	1	15176	15176		0.45452	0.45452	1		+		33986	25406	24829	25002	33078	33078					0.22609532513115482
LSRLRHRRRRK	11	Unmodified	_LSRLRHRRRRK_					0	0	0			REV__ENST00000492155.5_1_10:13749216-13749624:-|nuORF	REV__ENST00000492155.5_1_10:13749216-13749624:-|nuORF	MSMS	A375_MHC_IP_R2	2	511.9883728027344	3	511.997697	1532.97126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.673	1	40.448	39.948	40.948	0.77451								0	0	0	0.16358	1	14661	14661		0.08335	0.08335	1		+		33987	25406	24829	25002	33079	33079					0.22609532513115482
LSRLRHRRRRK	11	Unmodified	_LSRLRHRRRRK_					0	0	0			REV__ENST00000492155.5_1_10:13749216-13749624:-|nuORF	REV__ENST00000492155.5_1_10:13749216-13749624:-|nuORF	MSMS	A375_MHC_IP_R2	2	511.9885559082031	3	511.997697	1532.97126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.801	1	41.575	41.075	42.075	0.77451								0	0	0	0.16351	1	15119	15119		0.45452	0.37117	1		+		33988	25406	24829	25002	33080	33080					0.22609532513115482
LSRLRHRRRRK	11	Unmodified	_LSRLRHRRRRK_					0	0	0			REV__ENST00000492155.5_1_10:13749216-13749624:-|nuORF	REV__ENST00000492155.5_1_10:13749216-13749624:-|nuORF	MSMS	A375_MHC_IP_R2	2	511.9883728027344	3	511.997697	1532.97126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.604	1	43.376	42.876	43.876	0.7724								0	0	0	0.16358	1	15854	15854		0.08335	0.08335	1		+		33989	25406	24829	25002	33081	33081					0.22609532513115482
LSRLRTKY	8	Unmodified	_LSRLRTKY_					0	0	0			REV__ENSG00000215045|ENST00000457091|GRID2IP	REV__ENSG00000215045|ENST00000457091|GRID2IP	MULTI-SECPEP	A375_MHC_IP_R1	1	518.69482421875	2	518.816733	1035.61891	-0.43834	-0.00022742	-0.85739	-0.00044483	-1.2957	-0.00067225	518.8160862613082	62.203	0.35772	62.203	62.046	62.403	0					10	6	2	0	0	0	0.96184	1	22426	22426		18.146	7.3224	1	1604100	+		33990	22669	24830	25003	33082	33082					0.10252844325418664
LSRLSRCCIMG	11	Unmodified	_LSRLSRCCIMG_					0	0	0		nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	MULTI-SECPEP	A375_MHC_IP_R1	1	412.9590759277344	3	413.543727	1237.60935	0.34223	0.00014153	0.25758	0.00010652	0.59981	0.00024805	413.5436544165534	33.795	0.30039	33.795	33.547	33.848	0					7	5	2	0	0	0	0.98782	1	11053	11053		15.538	3.3637	1	630030			33991	14622	24831	25004	33083	33083					5.248661682344391E-05
LSRLSTAL	8	Unmodified	_LSRLSTAL_					0	0	0			REV__ENST00000519589.1_1_8:133153289-133492518:-|nuORF	REV__ENST00000519589.1_1_8:133153289-133492518:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	431.16363525390625	2	430.763635	859.512717	-0.14916	-6.4254E-05	0.34348	0.00014796	0.19431	8.3703E-05	430.7637386072428	60.294	0.61185	60.294	60.006	60.618	0					21	11	3	0	0	0	0.76996	1	21707	21707		29.082	3.6823	1	3518100	+		33992	21799	24832	25005	33084	33084					0.07734088760071245
LSRLSTAL	8	Unmodified	_LSRLSTAL_					0	0	0			REV__ENST00000519589.1_1_8:133153289-133492518:-|nuORF	REV__ENST00000519589.1_1_8:133153289-133492518:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	431.163330078125	2	430.763635	859.512717	-0.63115	-0.00027188	-0.26278	-0.0001132	-0.89394	-0.00038507	430.7635041081235	59.37	0.50567	60.117	59.793	60.299	0.74714					21	9	3	0	0	0	0.76996	1	22441	22441		36.127	0	1	3699500	+		33993	21799	24832	25005	33085	33085					0.07734088760071245
LSRLYFGTSGY	11	Unmodified	_LSRLYFGTSGY_					0	0	0		nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG	nc|ENSG00000042832|P01266-2|TG	nc|ENSG00000042832|P01266-2|TG	MULTI-MSMS	A375_MHC_IP_R2	2	422.62628173828125	3	421.883789	1262.62954	-0.42214	-0.00017809	0.70215	0.00029623	0.28002	0.00011813	421.8841247815201	24.341	0.91604	24.985	24.448	25.364	0.64368					41	17	3	0	0	0	0.54446	1	8022	8022		17.049	0	1	7876000			33994	1178	24833	25006	33086	33086					0.008727821891852727
LSRMKDLL	8	Unmodified	_LSRMKDLL_					0	0	0			REV__ENSG00000144452|ENST00000272895|ABCA12	REV__ENSG00000144452|ENST00000272895|ABCA12	MSMS	A375_MHC_IP_R2	2	488.684326171875	2	488.28642	974.558287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.655	1	85.391	84.891	85.891	0.73601								0	0	0	0.16876	1	32182	32182		16.942	2.104	1		+		33995	19424	24834	25007	33087	33087					0.06998990950819461
LSRMPMKL	8	Unmodified	_LSRMPMKL_					0	0	0		DEPDC5|p.P603L|1|0.4|ENSG00000100150|chr22:31819163-31819163|C/T|missense_variant	DEPDC5|p.P603L|1|0.4|ENSG00000100150|chr22:31819163-31819163|C/T|missense_variant	DEPDC5|p.P603L|1|0.4|ENSG00000100150|chr22:31819163-31819163|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	489.0967102050781	2	488.277541	974.540528	-0.75568	-0.00036898	-0.95944	-0.00046847	-1.7151	-0.00083745	488.27700896744375	39.114	0.3585	39.888	39.658	40.016	0.77451					10	6	2	0	0	0	0.73111	1	14380	14380		25.399	0.40835	1	2763600			33996	736	24835	25008	33088	33088					0.05223952424319123
LSRPSIRYY	9	Unmodified	_LSRPSIRYY_					0	0	0		ENST00000342756.9_1_4:57333862-57335845:+|nuORF	ENST00000342756.9_1_4:57333862-57335845:+|nuORF	ENST00000342756.9_1_4:57333862-57335845:+|nuORF	MSMS	A375_MHC_IP_R1	1	577.6622924804688	2	577.819473	1153.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.797	1	72.797	72.297	73.297	0								0	0	0	0.15486	1	26492	26492		8.5933	3.8373	1				33997	10880	24836	25009	33089	33089					0.05372523117216588
LSRQHLSYLQE	11	Unmodified	_LSRQHLSYLQE_					0	0	0		ENSG00000142235|ENST00000600059|LMTK3	ENSG00000142235|ENST00000600059|LMTK3	ENSG00000142235|ENST00000600059|LMTK3	MULTI-SECPEP	A375_MHC_IP_R2	2	458.28216552734375	3	458.577247	1372.70991	-0.60248	-0.00027628	-0.059415	-2.7247E-05	-0.66189	-0.00030353	458.5771708579334	23.887	0.56027	24.517	24.384	24.944	0.63014					24	10	3	0	0	0	0.99424	1	7887	7887		0.32927	0	1	13227000			33998	5300	24837	25010	33090	33090					0.03846643512201808
LSRQLIFQI	9	Unmodified	_LSRQLIFQI_					0	0	0		ENST00000295974.12_1_4:41035287-41102691:-|nuORF	ENST00000295974.12_1_4:41035287-41102691:-|nuORF	ENST00000295974.12_1_4:41035287-41102691:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	373.6285400390625	3	373.229119	1116.66553	0.15158	5.6575E-05	-0.34356	-0.00012823	-0.19198	-7.1651E-05	373.22863650037715	24.314	0.60635	24.314	23.991	24.597	0					21	11	3	0	0	0	0.69674	1	6945	6945		4.5289	0.94181	1	3514700			33999	10501	24838	25011	33091	33091					0.11186284156701731
LSRQLQQGDMY	11	Unmodified	_LSRQLQQGDMY_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-SECPEP	A375_MHC_IP_R1	1	446.63336181640625	3	446.887205	1337.63978	-0.35574	-0.00015898	-0.7449	-0.00033289	-1.1006	-0.00049187	447.22126629165575	30.728	0.25456	30.728	30.653	30.908	0					6	4	2	0	0	0	0.99921	1	9834	9834		0	0	1	812340			34000	8951	24839	25012	33092	33092					-0.015529781478790028
LSRQLVMW	8	Unmodified	_LSRQLVMW_					0	0	0			REV__ENSG00000180104|ENST00000512944|EXOC3	REV__ENSG00000180104|ENST00000512944|EXOC3	MULTI-MSMS	A375_MHC_IP_R2	2	516.6663818359375	2	516.786587	1031.55862	-0.96692	-0.00049969	2.7506	0.0014215	1.7837	0.00092177	516.7882468279614	34.858	0.70715	35.621	35.171	35.878	0.76338					18	13	2	0	0	0	0.7754	1	12633	12633		11.64	2.8949	1	3124000	+		34001	21596	24840	25013	33093	33093					0.044104106706754465
LSRQMWLCLTV	11	Unmodified	_LSRQMWLCLTV_					0	0	0			REV__ENST00000392973.7_1_16:90075326-90076003:-|nuORF	REV__ENST00000392973.7_1_16:90075326-90076003:-|nuORF	MSMS	A375_MHC_IP_R2	2	675.40966796875	2	675.35705	1348.69955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.299	1	86.035	85.535	86.535	0.73601								0	0	0	0.16258	1	32427	32427		5.2969	1.3525	1		+		34002	24284	24841	25014	33094	33094					0.03914621261787943
LSRRDIESY	9	Unmodified	_LSRRDIESY_					0	0	0			REV__ENSG00000118985|ENST00000237853|ELL2	REV__ENSG00000118985|ENST00000237853|ELL2	MULTI-SECPEP	A375_MHC_IP_R1	1	569.1536865234375	2	569.796195	1137.57784	-0.44905	-0.00025587	-0.44883	-0.00025574	-0.89788	-0.00051161	569.7960123370832	27.167	0.40301	27.167	26.928	27.331	0					11	7	2	0	0	0	0.77396	1	8260	8260		10.074	0	1	2199900	+		34003	18058	24842	25015	33095	33095					0.01455038495282679
LSRRELIFT	9	Unmodified	_LSRRELIFT_					0	0	0			REV__ENST00000533825.1_1_1:52237763-52247292:+|nuORF	REV__ENST00000533825.1_1_1:52237763-52247292:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	378.9483947753906	3	378.892507	1133.65569	-0.14667	-5.5571E-05	1.6492	0.00062486	1.5025	0.00056929	378.89324961898694	26.82	0.25653	27.48	27.363	27.62	0.65992					8	4	2	0	0	0	0.58268	1	9113	9113		15.739	8.6369	1	782230	+		34004	18022	24843	25016	33096	33096					0.09421096151299935
LSRRFRLF	8	Unmodified	_LSRRFRLF_					0	0	0			REV__nc|ENSG00000058804|Q9BTX1-4|NDC1	REV__nc|ENSG00000058804|Q9BTX1-4|NDC1	MULTI-MSMS	A375_MHC_IP_R2	2	365.9575500488281	3	365.55757	1093.65088	-0.19155	-7.0022E-05	0.30209	0.00011043	0.11054	4.041E-05	365.5576132141048	49.954	0.56052	50.708	50.394	50.955	0.75406					16	10	2	0	0	0	0.77488	1	18806	18806		10.074	0	1	1683900	+		34005	16436	24844	25017	33097	33097					0.10780256799216659
LSRRKRRRKR	10	Unmodified	_LSRRKRRRKR_					0	0	0			REV__nc|ENSG00000213471|A6NNM8-2|TTLL13	REV__nc|ENSG00000213471|A6NNM8-2|TTLL13	MSMS	A375_MHC_IP_R2	2	706.554443359375	2	706.468901	1410.92325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.13	1	120.66	120.16	121.16	0.5321								0	0	0	0.15631	1	45803	45803		0.35063	0	1		+		34006	22624	24845	25018	33098	33098					0.23422458593086048
LSRRLKPV	8	Unmodified	_LSRRLKPV_					0	0	0			REV__SOWAHB|p.P488S|1|0.32|ENSG00000186212|chr4:76896388-76896388|G/A|missense_variant	REV__SOWAHB|p.P488S|1|0.32|ENSG00000186212|chr4:76896388-76896388|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	484.9171447753906	2	484.821818	967.629084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.396	1	80.141	79.641	80.641	0.74474								0	0	0	0.16876	1	30129	30129		5.7604	0.52976	1		+		34007	21956	24846	25019	33099	33099					0.14397452050650372
LSRRPPSQW	9	Unmodified	_LSRRPPSQW_					0	0	0		ENST00000547068.5_1_14:34145504-34150054:+|nuORF	ENST00000547068.5_1_14:34145504-34150054:+|nuORF	ENST00000547068.5_1_14:34145504-34150054:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	564.1749267578125	2	563.809439	1125.60433	-0.43716	-0.00024648	1.1351	0.00063998	0.69794	0.00039351	563.8111152328036	96.023	0.20284	96.023	95.917	96.12	0					5	3	2	0	0	0	0.75466	1	35273	35273		7.9102	0	1	606190			34008	13339	24847	25020	33100	33100					0.046547721772640216
LSRRQVGA	8	Unmodified	_LSRRQVGA_					0	0	0			REV__ENST00000588980.5_1_19:36234054-36235075:-|nuORF	REV__ENST00000588980.5_1_19:36234054-36235075:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	444.1643981933594	2	443.764501	885.514448	-0.40841	-0.00018124	0.2967	0.00013166	-0.11171	-4.9574E-05	443.7645130365351	107.33	1.3272	108.09	107.84	109.17	0.75436					53	25	4	0	0	0	0.972	1	40861	40861		2.0598	2.0598	1	4093900	+		34009	26417	24848	25021	33101	33101					0.06711142568701689
LSRRRRRRGG	10	Unmodified	_LSRRRRRRGG_					0	0	0		ENST00000448464.6_1_8:95952396-95952444:-|nuORF	ENST00000448464.6_1_8:95952396-95952444:-|nuORF	ENST00000448464.6_1_8:95952396-95952444:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	635.6671142578125	2	635.395402	1268.77625	-0.74242	-0.00047173	3.836	0.0024374	3.0936	0.0019657	635.4001840946636	70.491	0.20341	71.225	71.099	71.302	0.73421					5	3	2	0	0	0	0.94421	1	26678	26678		1.6526	0.32309	1	641630			34010	12051	24849	25022	33102	33102					0.1526136170814425
LSRRVLPF	8	Unmodified	_LSRRVLPF_					0	0	0		ENST00000222990.7_1_7:2293201-2294050:-|nuORF	ENST00000222990.7_1_7:2293201-2294050:-|nuORF	ENST00000222990.7_1_7:2293201-2294050:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	494.7079772949219	2	494.308544	986.602535	-0.53945	-0.00026666	-0.1401	-6.925E-05	-0.67955	-0.00033591	494.30844174391547	72.799	0.76329	73.535	73.226	73.99	0.73541					33	14	3	0	0	0	0.90224	1	27608	27608		19.439	5.9311	1	3958000			34011	10114	24850	25023	33103	33103					0.10869763159314516
LSRRWRRW	8	Unmodified	_LSRRWRRW_					0	0	0		nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000157388|Q01668-4|CACNA1D;CACNA1D|p.S499F|1|0.41|ENSG00000157388|chr3:53719772-53719772|C/T|missense_variant	nc|ENSG00000157388|Q01668-3|CACNA1D	nc|ENSG00000157388|Q01668-3|CACNA1D	MULTI-SECPEP	A375_MHC_IP_R1	1	406.303955078125	3	405.903852	1214.68973	-0.38311	-0.00015551	1.2104	0.00049129	0.82724	0.00033578	405.9043091784537	36.173	0.30517	36.173	35.982	36.287	0					9	5	2	0	0	0	0.95423	1	12117	12117		9.3831	2.66	1	1715000			34012	6240	24851	25024	33104	33104					0.090969821535964
LSRRYAATYLW	11	Unmodified	_LSRRYAATYLW_					0	0	0			REV__tr|U7T8D7|U7T8D7_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00019PE=3SV=1	REV__tr|U7T8D7|U7T8D7_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00019PE=3SV=1	MSMS	A375_MHC_IP_R1	1	700.3777465820312	2	700.377686	1398.74082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.775	1	56.775	56.275	57.275	0								0	0	0	0.16297	1	20346	20346		3.2813	0.28607	1		+		34013	28886	24852	25025	33105	33105					0.0573984161712815
LSRSLGHFF	9	Unmodified	_LSRSLGHFF_					0	0	0		nc|ENSG00000170949|Q9HCG1-2|ZNF160	nc|ENSG00000170949|Q9HCG1-2|ZNF160	nc|ENSG00000170949|Q9HCG1-2|ZNF160	MULTI-MSMS	A375_MHC_IP_R1	1	355.5796813964844	3	355.194298	1062.56106	0.0073175	2.5991E-06	0.96815	0.00034388	0.97547	0.00034648	355.19429917641	31.539	0.71036	31.539	31.211	31.921	0					19	13	2	0	0	0	0.64808	1	10114	10114		7.609	0	1	1558900			34014	14766	24853	25026	33106	33106					0.03228582399970037
LSRSLKEFPR	10	Unmodified	_LSRSLKEFPR_					0	0	0		nc|ENSG00000214694|A8MVX0|ARHGEF33;ENSG00000214694|ENST00000409978|ARHGEF33	nc|ENSG00000214694|A8MVX0|ARHGEF33	nc|ENSG00000214694|A8MVX0|ARHGEF33	MULTI-MSMS	A375_MHC_IP_R1	1	618.392822265625	2	616.859129	1231.70371	-0.31968	-0.00019719	-0.34869	-0.00021509	-0.66836	-0.00041228	616.8588313195845	98.629	0.61276	98.629	98.352	98.964	0					37	11	4	0	0	0	0.72112	1	36162	36162		5.2969	0	1	13628000			34015	9622	24854	25027	33107	33107					0.0971217007136147
LSRSLKEFPR	10	Unmodified	_LSRSLKEFPR_					0	0	0		nc|ENSG00000214694|A8MVX0|ARHGEF33;ENSG00000214694|ENST00000409978|ARHGEF33	nc|ENSG00000214694|A8MVX0|ARHGEF33	nc|ENSG00000214694|A8MVX0|ARHGEF33	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	616.859129	1231.70371	-0.31968	-0.00019719	-0.34869	-0.00021509	-0.66836	-0.00041228	616.8588313195845	98.629	0.61276	98.629	98.352	98.964	0	0.09797	-0.00020015	NaN	5.2969	37	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13628000			34016	9622	24854	25027							0.0971217007136147
LSRSQRLF	8	Unmodified	_LSRSQRLF_					0	0	0		nc|ENSG00000135333|Q15375-2|EPHA7;nc|ENSG00000135333|Q15375-4|EPHA7;ENSG00000135333|ENST00000369303|EPHA7;nc|ENSG00000135333|Q15375-5|EPHA7	nc|ENSG00000135333|Q15375-2|EPHA7	nc|ENSG00000135333|Q15375-2|EPHA7	MULTI-SECPEP	A375_MHC_IP_R1	1	504.19317626953125	2	503.793258	1005.57196	-0.25618	-0.00012906	-0.19374	-9.7604E-05	-0.44992	-0.00022667	503.79307412095017	43.436	0.35466	43.436	43.249	43.603	0					15	6	3	0	0	0	0.94587	1	15097	15097		10.074	1.3285	1	2780900			34017	4669	24855	25028	33108	33108					0.06939984774282948
LSRSVGRSFRY	11	Unmodified	_LSRSVGRSFRY_					0	0	0			REV__CNTNAP1|p.P188S|1|0.14|ENSG00000108797|chr17:42685267-42685267|C/T|missense_variant	REV__CNTNAP1|p.P188S|1|0.14|ENSG00000108797|chr17:42685267-42685267|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	443.2723388671875	3	443.245832	1326.71567	-0.13491	-5.9797E-05	-1.0859	-0.0004813	-1.2208	-0.0005411	443.2450602441068	41.945	0.66208	41.945	41.674	42.336	0					12	12	2	0	0	0	0.73238	1	14667	14667		3.3557	0	1	1511600	+		34018	15818	24856	25029	33109	33109					0.06537786814578794
LSRTAPVYL	9	Unmodified	_LSRTAPVYL_					0	0	0		ENSG00000277858|ENST00000354514|H2AB2;ENSG00000277745|ENST00000615853|H2AB3;ENSG00000274183|ENST00000620016|H2AB1	ENSG00000277858|ENST00000354514|H2AB2	ENSG00000277858|ENST00000354514|H2AB2	MULTI-MSMS	A375_MHC_IP_R2	2	511.2074890136719	2	510.297842	1018.58113	-0.67345	-0.00034366	0.31878	0.00016267	-0.35467	-0.00018099	510.2980584705784	92.906	0.71014	93.645	93.291	94.001	0.73902					28	12	3	0	0	0	0.53367	1	35257	35257		18.146	1.2041	1	8553400			34019	10001	24857	25030	33110	33110					0.07258333339939327
LSRTFLSIPS	10	Unmodified	_LSRTFLSIPS_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	A375_MHC_IP_R2	2	374.61700439453125	3	374.21688	1119.62881	0.14448	5.4066E-05	0.030688	1.1484E-05	0.17517	6.555E-05	374.216831523055	35.668	0.60794	36.432	36.03	36.638	0.76338					27	11	3	0	0	0	0.69726	1	12936	12936		13.519	5.5733	1	2022000			34020	7983	24858	25031	33111	33111					0.07377987540144204
LSRTVFSHRKG	11	Unmodified	_LSRTVFSHRKG_					0	0	0		nc|ENSG00000079691|Q5VZK9-3|CARMIL1;nc|ENSG00000079691|Q5VZK9-2|CARMIL1;ENSG00000079691|ENST00000329474|CARMIL1	nc|ENSG00000079691|Q5VZK9-3|CARMIL1	nc|ENSG00000079691|Q5VZK9-3|CARMIL1	MULTI-SECPEP	A375_MHC_IP_R1	1	429.2912902832031	3	429.914194	1286.72075	-0.077357	-3.3257E-05	-2.2151	-0.0009523	-2.2925	-0.00098556	430.24716028481805	50.097	0.20553	50.097	49.998	50.204	0					6	3	2	0	0	0	0.99548	1	17759	17759		3.5927	2.5212	1	777480			34021	1701	24859	25032	33112	33112					0.08886090677151515
LSRTVTLV	8	Unmodified	_LSRTVTLV_					0	0	0		ENST00000393085.3_1_7:135613116-135613200:-|nuORF	ENST00000393085.3_1_7:135613116-135613200:-|nuORF	ENST00000393085.3_1_7:135613116-135613200:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	445.2996520996094	2	444.779285	887.544017	0.032549	1.4477E-05	-0.05679	-2.5259E-05	-0.02424	-1.0782E-05	444.779294661446	70.979	0.61456	70.979	70.648	71.262	0					22	11	3	0	0	0	0.68964	1	25782	25782		37.974	0	1	6290200			34022	11434	24860	25033	33113	33113					0.09574661794181338
LSRVDLVSI	9	Unmodified	_LSRVDLVSI_					0	0	0			REV__ENSG00000185798|ENST00000332629|WDR53	REV__ENSG00000185798|ENST00000332629|WDR53	MULTI-SECPEP	A375_MHC_IP_R2	2	501.21099853515625	2	501.303124	1000.5917	-0.63547	-0.00031856	-0.3786	-0.00018979	-1.0141	-0.00050836	501.8042023202659	39.525	0.30426	40.3	40.169	40.473	0.77451					6	5	2	0	0	0	0.60917	1	14620	14620		5.7319	0	1	766860	+		34023	21920	24861	25034	33114	33114					0.09142315994370165
LSRVIDESY	9	Unmodified	_LSRVIDESY_					0	0	0			REV__nc|ENSG00000123901|Q9NYM4-2|GPR83	REV__nc|ENSG00000123901|Q9NYM4-2|GPR83	MSMS	A375_MHC_IP_R2	2	541.2786254882812	2	541.279846	1080.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.359	1	68.096	67.596	68.596	0.73631								0	0	0	0.15411	1	25518	25518		14.838	1.3304	1		+		34024	18262	24862	25035	33115	33115					0.008088313724329055
LSRWKKKRTRF	11	Unmodified	_LSRWKKKRTRF_					0	0	0			REV__RAPGEF2|p.I1087Ffs*98|1|0.31|ENSG00000109756|chr4:159350159-159350159|A/-|frameshift_variant	REV__RAPGEF2|p.I1087Ffs*98|1|0.31|ENSG00000109756|chr4:159350159-159350159|A/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	753.7408447265625	2	753.462419	1504.91028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.55	1	126.84	126.34	127.34	0.2951								0	0	0	0.16297	1	49510	49510		3.2813	1.9518	1		+		34025	17594	24863	25036	33116	33116					0.17802582690319468
LSRWQNRTMEN	11	Unmodified	_LSRWQNRTMEN_					0	0	0		nc|ENSG00000078246|O75386-2|TULP3;ENSG00000078246|ENST00000448120|TULP3	nc|ENSG00000078246|O75386-2|TULP3	nc|ENSG00000078246|O75386-2|TULP3	MULTI-SECPEP	A375_MHC_IP_R1	1	358.91339111328125	4	359.428122	1433.68338	-0.11589	-4.1654E-05	-0.4144	-0.00014895	-0.53029	-0.0001906	359.678649419612	24.063	0.50729	24.063	23.94	24.447	0					17	9	4	0	0	0	0.99738	1	6823	6823		2.4348	1.5093	1	4231300			34026	1670	24864	25037	33117	33117					-0.016113686507424063
LSRYAEAVL	9	Unmodified	_LSRYAEAVL_					0	0	0			REV__ENST00000572686.1_1_17:47677742-47677928:-|nuORF	REV__ENST00000572686.1_1_17:47677742-47677928:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	511.9881286621094	2	511.287474	1020.5604	-1.1354	-0.00058051	1.9356	0.00098964	0.8002	0.00040913	511.2884901167251	38.45	0.50655	39.225	38.895	39.401	0.77451					11	9	2	0	0	0	0.65527	1	14199	14199		17.113	2.2746	1	2438800	+		34027	18146	24865	25038	33118	33118					0.05093742960275449
LSRYAHWV	8	Unmodified	_LSRYAHWV_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000105576|ENST00000425528|TNPO2;ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF;nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-SECPEP	A375_MHC_IP_R1	1	515.70947265625	2	516.274701	1030.53485	-0.57365	-0.00029616	-1.4151	-0.00073057	-1.9887	-0.0010267	516.2738396885998	76.031	0.55547	76.031	75.714	76.269	0					13	10	2	0	0	0	0.96266	1	27771	27771		16.942	4.4107	1	1669900			34028	1776	24866	25039	33119	33119					0.020803132284981984
LSRYDGLMML	10	Unmodified	_LSRYDGLMML_					0	0	0			REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	A375_MHC_IP_R2	2	400.6200866699219	3	400.203477	1197.5886	-0.27791	-0.00011122	1.1046	0.00044208	0.82674	0.00033087	400.53766231735983	35.271	0.25233	36.034	35.829	36.081	0.76338					5	4	2	0	0	0	0.88918	1	12730	12730		15.739	2.22	1	456440	+		34029	22186	24867	25040	33120	33120					-0.0022901844629359402
LSRYDVRL	8	Unmodified	_LSRYDVRL_					0	0	0		ENSG00000268089|ENST00000598523|GABRQ	ENSG00000268089|ENST00000598523|GABRQ	ENSG00000268089|ENST00000598523|GABRQ	MULTI-SECPEP	A375_MHC_IP_R2	2	511.21337890625	2	511.293091	1020.57163	-0.65951	-0.0003372	-0.46745	-0.00023901	-1.127	-0.00057621	511.29279712710246	42.977	0.40395	43.749	43.573	43.977	0.7724					11	7	2	0	0	0	0.96184	1	16017	16017		18.146	0	1	1908600			34030	9970	24868	25041	33121	33121					0.06216565054421608
LSRYFWVPNRI	11	Unmodified	_LSRYFWVPNRI_					0	0	0		MTMR11|p.P230S|1|0.49|ENSG00000014914|chr1:149933938-149933938|G/A|missense_variant	MTMR11|p.P230S|1|0.49|ENSG00000014914|chr1:149933938-149933938|G/A|missense_variant	MTMR11|p.P230S|1|0.49|ENSG00000014914|chr1:149933938-149933938|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	726.2113037109375	2	725.901328	1449.7881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123	1	123.38	122.88	123.88	0.3766								0	0	0	0.16124	1	47211	47211		12.241	3.4953	1				34031	14414	24869	25042	33122	33122					0.08120120888133897
LSRYSELLQ	9	Unmodified	_LSRYSELLQ_					0	0	0			REV__nc|ENSG00000163636|Q15008-3|PSMD6	REV__nc|ENSG00000163636|Q15008-3|PSMD6	MULTI-MSMS	A375_MHC_IP_R1	1	370.6048889160156	3	370.204751	1107.59242	0.0052612	1.9477E-06	0.1051	3.891E-05	0.11036	4.0858E-05	370.2049450447326	23.506	0.30592	23.506	23.381	23.687	0					13	5	3	0	0	0	0.75032	1	6502	6502		2.4985	0	1	6192300	+		34032	20392	24870	25043	33123	33123					0.0429311064342528
LSRYSELLQ	9	Unmodified	_LSRYSELLQ_					0	0	0			REV__nc|ENSG00000163636|Q15008-3|PSMD6	REV__nc|ENSG00000163636|Q15008-3|PSMD6	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	370.204751	1107.59242	0.0052612	1.9477E-06	0.1051	3.891E-05	0.11036	4.0858E-05	370.2049450447326	23.506	0.30592	23.506	23.381	23.687	0	0	0	NaN	2.4985	13	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6192300	+		34033	20392	24870	25043							0.0429311064342528
LSSAEGASSSP	11	Unmodified	_LSSAEGASSSP_					0	0	0			REV__ENST00000492173.1_1_1:10718563-10720675:-|nuORF	REV__ENST00000492173.1_1_1:10718563-10720675:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	496.1408386230469	2	496.730186	991.445819	-0.38745	-0.00019246	-1.0847	-0.0005388	-1.4721	-0.00073125	496.72962728030853	74.099	0.45604	74.099	73.893	74.349	0					11	8	2	0	0	0	0.90584	1	26984	26984		17.113	0	1	528900	+		34034	25407	24871	25044	33124	33124					-0.050246113123193936
LSSASTSSHN	10	Unmodified	_LSSASTSSHN_					0	0	0		ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MULTI-MSMS	A375_MHC_IP_R1	1	495.6973876953125	2	495.727978	989.441402	-0.31005	-0.0001537	0.045986	2.2796E-05	-0.26407	-0.00013091	495.72785269964567	63.151	0.41046	63.151	62.966	63.377	0					10	7	2	0	0	0	0.6806	1	22799	22799		14.838	1.7958	1	689030			34035	1035	24872	25045	33125	33125					-0.05374075735232964
LSSCPVPGFNL	11	Unmodified	_LSSCPVPGFNL_					0	0	0		ENST00000421004.3_1_5:77654706-77654847:-|nuORF	ENST00000421004.3_1_5:77654706-77654847:-|nuORF	ENST00000421004.3_1_5:77654706-77654847:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	567.19677734375	2	567.286617	1132.55868	-0.20111	-0.00011409	-4.337	-0.0024603	-4.5381	-0.0025744	567.7862031123584	110.35	0.81399	110.35	110.04	110.85	0					20	15	2	0	0	0	0.90584	1	40353	40353		12.241	0	1	3235000			34036	11734	24873	25046	33126	33126					-0.002296341199780727
LSSCSELVP	9	Unmodified	_LSSCSELVP_					0	0	0		LTR8_dup2971|chr17:8380695-8381392:+|3.434572253229892|0.2447948664736123|3.81|472.0|53|3|anti-sense	LTR8_dup2971|chr17:8380695-8381392:+|3.434572253229892|0.2447948664736123|3.81|472.0|53|3|anti-sense	LTR8_dup2971|chr17:8380695-8381392:+|3.434572253229892|0.2447948664736123|3.81|472.0|53|3|anti-sense	MULTI-MSMS	A375_MHC_IP_R2	2	467.6625671386719	2	467.731143	933.447733	-0.55172	-0.00025806	0.12893	6.0304E-05	-0.4228	-0.00019775	467.7311845544376	69.743	1.4214	70.477	70.031	71.453	0.73421					59	27	3	0	0	0	0.43185	1	26723	26723		23.148	5.0134	1	39505000			34037	14331	24874	25047	33127	33127					-0.021652738280636186
LSSCTIFSTQ	10	Unmodified	_LSSCTIFSTQ_					0	0	0			REV__ENST00000391785.7_1_19:53087137-53087215:+|nuORF	REV__ENST00000391785.7_1_19:53087137-53087215:+|nuORF	MSMS	A375_MHC_IP_R2	2	543.6609497070312	2	543.760432	1085.50631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.827	1	95.572	95.072	96.072	0.74474								0	0	0	0.14741	1	36030	36030		22.736	0.98964	1		+		34038	24264	24875	25048	33128	33128					-0.03302217253599338
LSSEDRACLPE	11	Unmodified	_LSSEDRACLPE_					0	0	0		BAZ1B|p.R513C|1|0.1|ENSG00000009954|chr7:73477924-73477924|G/A|missense_variant	BAZ1B|p.R513C|1|0.1|ENSG00000009954|chr7:73477924-73477924|G/A|missense_variant	BAZ1B|p.R513C|1|0.1|ENSG00000009954|chr7:73477924-73477924|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	610.6856079101562	2	610.284802	1218.55505	-0.32129	-0.00019608	-0.44798	-0.0002734	-0.76927	-0.00046947	610.2852085722252	55.401	0.81565	55.401	55.025	55.841	0					34	15	4	0	0	0	0.72656	1	19794	19794		12.175	0.68004	1	2683600			34039	225	24876	25049	33129	33129					-0.04548348684488701
LSSEKKSEKSP	11	Unmodified	_LSSEKKSEKSP_					0	0	0			REV__nc|ENSG00000147133|P21675-25|TAF1	REV__nc|ENSG00000147133|P21675-25|TAF1	MSMS	A375_MHC_IP_R1	1	407.2765808105469	3	407.22247	1218.64558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.378	1	38.378	37.878	38.878	0								0	0	0	0.16182	1	13013	13013		9.2438	2.6134	1		+		34040	19572	24877	25050	33130	33130					0.045004436354247446
LSSEPSRGSSQ	11	Unmodified	_LSSEPSRGSSQ_					0	0	0			REV__ENST00000543741.6_1_14:24436525-24436753:+|nuORF	REV__ENST00000543741.6_1_14:24436525-24436753:+|nuORF	MSMS	A375_MHC_IP_R2	2	567.6744384765625	2	567.772916	1133.53128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.16	1	115.85	115.35	116.35	0.68999								0	0	0	0.16138	1	43410	43410		11.495	0.67078	1		+		34041	25979	24878	25051	33131	33131					-0.030144461266672806
LSSERSYW	8	Unmodified	_LSSERSYW_					0	0	0		ENST00000344204.8_1_5:14336708-14336831:+|nuORF	ENST00000344204.8_1_5:14336708-14336831:+|nuORF	ENST00000344204.8_1_5:14336708-14336831:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	514.1901245117188	2	514.245806	1026.47706	0.049692	2.5554E-05	-1.0767	-0.00055367	-1.027	-0.00052812	514.2450192767028	44.799	0.81383	44.799	44.318	45.132	0					20	15	2	0	0	0	0.77603	1	15521	15521		9.3474	0.75416	1	1923500			34042	10893	24879	25052	33132	33132					-0.03511993487563814
LSSFASNIYF	10	Unmodified	_LSSFASNIYF_					0	0	0		SLC16A9|p.P100S|1|0.3|ENSG00000165449|chr10:59672812-59672812|G/A|missense_variant	SLC16A9|p.P100S|1|0.3|ENSG00000165449|chr10:59672812-59672812|G/A|missense_variant	SLC16A9|p.P100S|1|0.3|ENSG00000165449|chr10:59672812-59672812|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	574.831298828125	2	574.784764	1147.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.49	1	102.25	101.75	102.75	0.76428								0	0	0	0.15332	1	38467	38467		10.074	1.3285	1				34043	29167	24880	25053	33133	33133					-0.012899806222094412
LSSGLDAVQWL	11	Unmodified	_LSSGLDAVQWL_					0	0	0			REV__ENSG00000124486|ENST00000378308|USP9X	REV__ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	A375_MHC_IP_R1	1	396.9279479980469	3	396.880156	1187.61864	0.14414	5.7208E-05	0.16804	6.6692E-05	0.31218	0.0001239	396.88019620257774	22.842	0.91138	22.842	22.469	23.381	0					33	17	3	0	0	0	0.88813	1	6403	6403		8.2864	0.80937	1	7252400	+		34044	18305	24881	25054	33134	33134					0.03233379814901127
LSSGPGQEPV	10	Unmodified	_LSSGPGQEPV_					0	0	0		CON__Q6T181	CON__Q6T181	CON__Q6T181	MULTI-MSMS	A375_MHC_IP_R2	2	487.6467590332031	2	485.745639	969.476725	-0.60169	-0.00029227	-0.58161	-0.00028252	-1.1833	-0.00057478	485.7455270691734	75.665	0.66388	76.405	76.078	76.742	0.74052					49	12	6	0	0	0	0.70651	1	28712	28712		9.3831	0.035688	1	21678000		+	34045	628	24882	25055	33135	33135					-0.009234132074311674
LSSGRLLR	8	Unmodified	_LSSGRLLR_					0	0	0		GPR179|p.K1829Pfs*6|1|0.44|ENSG00000277399|chr17:38328074-38328084|TCCAATCCCTT/-|frameshift_variant;nc|ENSG00000277399|Q6PRD1|GPR179;ENSG00000277399|ENST00000616987|GPR179	GPR179|p.K1829Pfs*6|1|0.44|ENSG00000277399|chr17:38328074-38328084|TCCAATCCCTT/-|frameshift_variant	GPR179|p.K1829Pfs*6|1|0.44|ENSG00000277399|chr17:38328074-38328084|TCCAATCCCTT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	451.6819152832031	2	451.282526	900.550499	-0.22634	-0.00010214	-0.058149	-2.6242E-05	-0.28449	-0.00012838	451.28241347303043	36.245	0.40683	36.245	35.982	36.389	0					12	7	2	0	0	0	0.77501	1	12119	12119		13.042	2.2185	1	2271000			34046	10028	24883	25056	33136	33136					0.09624599745552587
LSSGRNTLVF	10	Unmodified	_LSSGRNTLVF_					0	0	0			REV__nc|ENSG00000105426|Q13332-7|PTPRS	REV__nc|ENSG00000105426|Q13332-7|PTPRS	MULTI-SECPEP	A375_MHC_IP_R2	2	365.6047668457031	3	365.204862	1092.59276	-0.018517	-6.7624E-06	-0.077016	-2.8126E-05	-0.095532	-3.4889E-05	365.2047861982308	32.655	0.55937	33.392	33.112	33.671	0.73692					25	9	4	0	0	0	0.81532	1	11648	11648		9.2438	1.2984	1	4408100	+		34047	17382	24884	25057	33137	33137					0.050165303632638825
LSSGTQTPSN	10	Unmodified	_LSSGTQTPSN_					0	0	0		ZNF281|p.P652S|1|0.35|ENSG00000162702|chr1:200407752-200407752|G/A|missense_variant	ZNF281|p.P652S|1|0.35|ENSG00000162702|chr1:200407752-200407752|G/A|missense_variant	ZNF281|p.P652S|1|0.35|ENSG00000162702|chr1:200407752-200407752|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	496.1717834472656	2	496.238178	990.461803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.704	1	62.449	61.949	62.949	0.74502								0	0	0	0.14925	1	23388	23388		19.257	3.4098	1				34048	30209	24885	25058	33138	33138					-0.033809050754143755
LSSGTVNANQ	10	Unmodified	_LSSGTVNANQ_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MSMS	A375_MHC_IP_R2	2	495.6969909667969	2	495.74617	989.477788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.552	1	62.297	61.797	62.797	0.74503								0	0	0	0.12703	1	23329	23329		36.127	15.256	1		+		34049	21583	24886	25059	33139	33139					-0.017371988385320947
LSSGWAEPLNL	11	Unmodified	_LSSGWAEPLNL_					0	0	0		ENST00000372390.8_1_X:106957508-106957742:-|nuORF	ENST00000372390.8_1_X:106957508-106957742:-|nuORF	ENST00000372390.8_1_X:106957508-106957742:-|nuORF	MSMS	A375_MHC_IP_R1	1	593.8967895507812	2	593.808771	1185.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.452	1	90.452	89.952	90.952	0								0	0	0	0.15902	1	33240	33240		13.615	2.1202	1				34050	11196	24887	25060	33140	33140					0.017610932978641358
LSSHCILLL	9	Unmodified	_LSSHCILLL_					0	0	0		ENST00000546916.1_1_12:58114003-58114195:+|nuORF	ENST00000546916.1_1_12:58114003-58114195:+|nuORF	ENST00000546916.1_1_12:58114003-58114195:+|nuORF	MSMS	A375_MHC_IP_R2	2	499.6878662109375	2	499.788795	997.563038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.093	1	82.836	82.336	83.336	0.74293								0	0	0	0.107	1	31182	31182		39.957	3.9131	1				34051	13337	24888	25061	33141	33141					0.06415875093591694
LSSHHLIV	8	Unmodified	_LSSHHLIV_					0	0	0		ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-2|ANKLE2;ENST00000538591.5_1_12:133311987-133319805:-|nuORF	ENSG00000176915|ENST00000357997|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	MULTI-MSMS	A375_MHC_IP_R2	2	453.68194580078125	2	453.263802	904.513051	-0.21655	-9.8155E-05	-0.24495	-0.00011103	-0.4615	-0.00020918	453.26373348160706	64.672	0.56039	65.413	65.157	65.717	0.74022					20	10	3	0	0	0	0.7338	1	24510	24510		24.674	0	1	1457200			34052	8043	24889	25062	33142	33142					0.056975084799546494
LSSHPARRPY	10	Unmodified	_LSSHPARRPY_					0	0	0			REV__ENST00000323703.10_1_2:27601338-27601512:-|nuORF	REV__ENST00000323703.10_1_2:27601338-27601512:-|nuORF	MSMS	A375_MHC_IP_R1	1	592.1622924804688	2	592.320171	1182.62579	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.804	1	91.804	91.304	92.304	0								0	0	0	0.15451	1	33733	33733		6.2058	0.47393	1		+		34053	23585	24890	25063	33143	33143					0.04178157205979005
LSSHSLEPPY	10	Unmodified	_LSSHSLEPPY_					0	0	0			REV__nc|ENSG00000131149|Q14687-2|GSE1	REV__nc|ENSG00000131149|Q14687-2|GSE1	MULTI-SECPEP	A375_MHC_IP_R1	1	565.6796264648438	2	565.279846	1128.54514	-0.10541	-5.9586E-05	-0.27291	-0.00015427	-0.37832	-0.00021386	565.2797143773527	70.008	0.6088	70.008	69.732	70.341	0					26	11	3	0	0	0	0.61429	1	25404	25404		37.974	3.5723	1	6744500	+		34054	18592	24891	25064	33144	33144					-0.013991686275630855
LSSHSLEPPY	10	Unmodified	_LSSHSLEPPY_					0	0	0			REV__nc|ENSG00000131149|Q14687-2|GSE1	REV__nc|ENSG00000131149|Q14687-2|GSE1	MULTI-MSMS	A375_MHC_IP_R2	2	565.6795043945312	2	565.279846	1128.54514	-0.35812	-0.00020244	-0.88216	-0.00049867	-1.2403	-0.00070111	565.2796093212258	69.433	0.81361	70.167	69.879	70.693	0.73421					42	15	4	0	0	0	0.36703	1	26296	26296		36.127	3.3413	1	7559300	+		34055	18592	24891	25064	33145	33145					-0.013991686275630855
LSSIFSSRISN	11	Unmodified	_LSSIFSSRISN_					0	0	0			REV__ENSG00000177294|ENST00000321535|FBXO39	REV__ENSG00000177294|ENST00000321535|FBXO39	MULTI-SECPEP	A375_MHC_IP_R2	2	404.9510803222656	3	404.21906	1209.63535	-0.26443	-0.00010689	1.4186	0.00057344	1.1542	0.00046655	404.21889870604707	19.186	0.40378	19.789	19.633	20.037	0.60308					9	7	2	0	0	0	0.99424	1	5849	5849		1.0136	0.1492	1	819210	+		34056	21450	24892	25065	33146	33146					0.0389188070084856
LSSIRVPIIVP	11	Unmodified	_LSSIRVPIIVP_					0	0	0		nc|ENSG00000103723|Q13367-3|AP3B2;nc|ENSG00000103723|Q13367|AP3B2;ENSG00000103723|ENST00000535359|AP3B2;ENSG00000132842|ENST00000255194|AP3B1;nc|ENSG00000132842|O00203-3|AP3B1	nc|ENSG00000103723|Q13367-3|AP3B2;ENSG00000132842|ENST00000255194|AP3B1	nc|ENSG00000103723|Q13367-3|AP3B2	MSMS	A375_MHC_IP_R2	2	597.42724609375	2	597.384448	1192.75434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.404	1	97.157	96.657	97.657	0.75256								0	0	0	0.16297	1	36603	36603		3.2813	1.2216	1				34057	2467;4457	24893	25066	33147	33147					0.16567699396341595
LSSIVEIKKE	10	Unmodified	_LSSIVEIKKE_					0	0	0		ENSG00000143740|ENST00000617596|SNAP47;nc|ENSG00000143740|Q5SQN1-2|SNAP47;nc|ENSG00000143740|Q5SQN1|SNAP47	ENSG00000143740|ENST00000617596|SNAP47	ENSG00000143740|ENST00000617596|SNAP47	MSMS	A375_MHC_IP_R2	2	382.60467529296875	3	382.564056	1144.67034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.978	1	24.608	24.108	25.108	0.63014								0	0	0	0.15191	1	7804	7804		14.218	1.9906	1				34058	5427	24894	25067	33148	33148					0.10379123508801058
LSSIWLEPS	9	Unmodified	_LSSIWLEPS_					0	0	0			REV__nc|ENSG00000117595|O14896-2|IRF6	REV__nc|ENSG00000117595|O14896-2|IRF6	MULTI-SECPEP	A375_MHC_IP_R1	1	516.126953125	2	516.274032	1030.53351	-0.28323	-0.00014623	0.22305	0.00011515	-0.060186	-3.1072E-05	516.7758059954554	44.335	0.86852	44.335	43.959	44.827	0					33	16	3	0	0	0	0.73363	1	15351	15351		10.824	1.4765	1	11257000	+		34059	18014	24895	25068	33149	33149					0.01946634349087617
LSSKMSGR	8	Unmodified	_LSSKMSGR_					0	0	0			REV__ENST00000446176.6_1_9:132650088-132650340:-|nuORF	REV__ENST00000446176.6_1_9:132650088-132650340:-|nuORF	MSMS	A375_MHC_IP_R1	1	433.28509521484375	2	433.231645	864.448736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.04	1	135.04	134.54	135.54	0								0	0	0	0.16876	1	52076	52076		2.0598	0	1		+		34060	24851	24896	25069	33150	33150					0.011089853315070286
LSSLDRWQ	8	Unmodified	_LSSLDRWQ_					0	0	0			REV__chr16:14659002-14661892|101|10.26|0.2|5.67|+|1|TE_info:AluSq2,AluSq2_dup48272,Alu,SINE,donor,-,14658909,14659002|None,BFAR|1	REV__chr16:14659002-14661892|101|10.26|0.2|5.67|+|1|TE_info:AluSq2,AluSq2_dup48272,Alu,SINE,donor,-,14658909,14659002|None,BFAR|1	MULTI-MSMS	A375_MHC_IP_R2	2	502.6924743652344	2	502.761623	1003.50869	-0.96172	-0.00048352	0.10246	5.1513E-05	-0.85926	-0.000432	502.7614993149502	60.286	0.91607	61.031	60.398	61.314	0.74503					25	17	2	0	0	0	0.71451	1	22782	22782		30.225	1.738	1	3486800	+		34061	15379	24897	25070	33151	33151					0.007079992663761914
LSSLEEELL	9	Unmodified	_LSSLEEELL_					0	0	0			REV__nc|ENSG00000044459|Q9NXG0|CNTLN;REV__ENSG00000113555|ENST00000231484|PCDH12	REV__ENSG00000113555|ENST00000231484|PCDH12	MSMS	A375_MHC_IP_R1	1	516.7025146484375	2	516.776605	1031.53866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.871	1	51.871	51.371	52.371	0								0	0	0	0.1499	1	18426	18426		21.747	2.4897	1		+		34062	16355;17785	24898	25071	33152	33152					0.024148934210643347
LSSLHGSP	8	Unmodified	_LSSLHGSP_					0	0	0			REV__ENST00000543026.5_1_12:31242773-31246356:+|nuORF	REV__ENST00000543026.5_1_12:31242773-31246356:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	398.5903625488281	2	399.211235	796.407917	-0.1829	-7.3015E-05	0.036015	1.4377E-05	-0.14688	-5.8638E-05	399.2115380201386	37.633	0.3065	37.633	37.505	37.812	0					8	5	2	0	0	0	0.95423	1	12728	12728		7.9102	0	1	1111400	+		34063	25971	24899	25072	33153	33153					0.0015696728353304934
LSSLKAAL	8	Unmodified	_LSSLKAAL_					0	0	0		ENST00000572179.5_1_17:3620010-3620070:-|nuORF	ENST00000572179.5_1_17:3620010-3620070:-|nuORF	ENST00000572179.5_1_17:3620010-3620070:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	402.1551818847656	2	401.755278	801.496004	-0.21833	-8.7717E-05	-0.1142	-4.5881E-05	-0.33254	-0.0001336	401.7551743658996	62.092	0.5589	62.835	62.571	63.13	0.74263					15	10	2	0	0	0	0.84294	1	23553	23553		30.637	1.555	1	1381100			34064	13614	24900	25073	33154	33154					0.0873158787412649
LSSLMSTIIGY	11	Unmodified	_LSSLMSTIIGY_					0	0	0			REV__OR2B3|p.N286S|1|0.09|ENSG00000204703|chr6:29086392-29086392|T/C|missense_variant	REV__OR2B3|p.N286S|1|0.09|ENSG00000204703|chr6:29086392-29086392|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	593.2137451171875	2	592.815207	1183.61586	-0.56402	-0.00033436	-2.4042	-0.0014253	-2.9683	-0.0017596	592.8136029708421	102.69	0.45731	103.46	103.12	103.58	0.76428					11	8	2	0	0	0	0.4264	1	38920	38920		34.402	0	1	1840600	+		34065	27660	24901	25074	33155	33155					0.03139788365729146
LSSLPTQMDY	10	Unmodified	_LSSLPTQMDY_					0	0	0		nc|ENSG00000114902|Q9Y6A9|SPCS1;ENSG00000114902|ENST00000619898|SPCS1;ENST00000448693.2_1_3:52740223-52740934:+|nuORF	nc|ENSG00000114902|Q9Y6A9|SPCS1	nc|ENSG00000114902|Q9Y6A9|SPCS1	MULTI-SECPEP	A375_MHC_IP_R1	1	578.1729736328125	2	577.773539	1153.53253	-0.17005	-9.8252E-05	0.19679	0.0001137	0.026732	1.5445E-05	577.7736405390835	83.284	0.45749	83.284	82.974	83.432	0					11	8	2	0	0	0	0.66275	1	30486	30486		23.79	20.508	1	2410500			34066	3255	24902	25075	33156	33156					-0.03809948082130177
LSSLPTQMDY	10	Unmodified	_LSSLPTQMDY_					0	0	0		nc|ENSG00000114902|Q9Y6A9|SPCS1;ENSG00000114902|ENST00000619898|SPCS1;ENST00000448693.2_1_3:52740223-52740934:+|nuORF	nc|ENSG00000114902|Q9Y6A9|SPCS1	nc|ENSG00000114902|Q9Y6A9|SPCS1	MULTI-MATCH	A375_MHC_IP_R2	2		2	577.773539	1153.53253	-0.19515	-0.00011275	-0.4476	-0.00025861	-0.64275	-0.00037136	577.7731064073616	82.668	0.50418	83.41	83.144	83.648	0.74293	0.063336	-0.00052958	NaN	23.79	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1941800			34067	3255	24902	25075							-0.03809948082130177
LSSLRELCI	9	Unmodified	_LSSLRELCI_					0	0	0		ENSG00000174799|ENST00000257287|CEP135	ENSG00000174799|ENST00000257287|CEP135	ENSG00000174799|ENST00000257287|CEP135	MULTI-SECPEP	A375_MHC_IP_R1	1	517.6608276367188	2	517.289159	1032.56377	-0.55174	-0.00028541	-2.9298	-0.0015156	-3.4815	-0.001801	517.7898748453274	53.431	0.50774	53.431	53.148	53.656	0					22	9	4	0	0	0	0.69504	1	19081	19081		4.3292	0	1	1898200			34068	7903	24903	25076	33157	33157					0.048786697426066894
LSSLRLRNV	9	Unmodified	_LSSLRLRNV_					0	0	0		ENSG00000170458|ENST00000302014|CD14	ENSG00000170458|ENST00000302014|CD14	ENSG00000170458|ENST00000302014|CD14	MULTI-SECPEP	A375_MHC_IP_R2	2	529.72705078125	2	529.327465	1056.64038	-0.50793	-0.00026886	-0.37848	-0.00020034	-0.88642	-0.0004692	529.3272358566065	42.112	0.40848	42.884	42.656	43.065	0.7724					12	7	2	0	0	0	0.58271	1	15665	15665		14.838	0	1	4028600			34069	7508	24904	25077	33158	33158					0.11432229354113588
LSSLRSVSL	9	Unmodified	_LSSLRSVSL_					0	0	0		ENSG00000174004|ENST00000328557|NRROS	ENSG00000174004|ENST00000328557|NRROS	ENSG00000174004|ENST00000328557|NRROS	MULTI-SECPEP	A375_MHC_IP_R1	1	481.6115417480469	2	481.287474	960.560395	-0.49588	-0.00023866	-0.33261	-0.00016008	-0.8285	-0.00039874	481.2875679403363	39.535	0.2011	39.535	39.391	39.592	0					5	3	2	0	0	0	0.65527	1	13497	13497		12.241	0	1	1104200			34070	7847	24905	25078	33159	33159					0.07853742960276122
LSSLSVTTGA	10	Unmodified	_LSSLSVTTGA_					0	0	0		NMBR|p.N8S|1|0.35|ENSG00000135577|chr6:142088636-142088636|T/C|missense_variant	NMBR|p.N8S|1|0.35|ENSG00000135577|chr6:142088636-142088636|T/C|missense_variant	NMBR|p.N8S|1|0.35|ENSG00000135577|chr6:142088636-142088636|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	468.6635437011719	2	468.25584	934.497126	-0.17213	-8.06E-05	-1.3854	-0.00064871	-1.5575	-0.00072931	468.25509859404195	111.17	0.61443	111.17	110.8	111.41	0					16	11	2	0	0	0	0.45919	1	40782	40782		30.637	30.637	1	813710			34071	15008	24906	25079	33160	33160					0.02725757452367361
LSSLSVTTGA	10	Unmodified	_LSSLSVTTGA_					0	0	0		NMBR|p.N8S|1|0.35|ENSG00000135577|chr6:142088636-142088636|T/C|missense_variant	NMBR|p.N8S|1|0.35|ENSG00000135577|chr6:142088636-142088636|T/C|missense_variant	NMBR|p.N8S|1|0.35|ENSG00000135577|chr6:142088636-142088636|T/C|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	468.25584	934.497126	-0.17213	-8.06E-05	-1.3854	-0.00064871	-1.5575	-0.00072931	468.25509859404195	111.17	0.61443	111.17	110.8	111.41	0	0	0	NaN	30.637	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	813710			34072	15008	24906	25079							0.02725757452367361
LSSLTVRGRSW	11	Unmodified	_LSSLTVRGRSW_					0	0	0		ENST00000422053.3_1_20:368928-376885:+|nuORF	ENST00000422053.3_1_20:368928-376885:+|nuORF	ENST00000422053.3_1_20:368928-376885:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	421.63861083984375	3	421.238566	1260.69387	0.13014	5.482E-05	-0.23782	-0.00010018	-0.10768	-4.536E-05	421.2384790738509	43.492	0.45753	43.492	43.249	43.706	0					17	8	3	0	0	0	0.50979	1	15145	15145		30.354	4.2335	1	3884400			34073	11744	24907	25080	33161	33161					0.07394982065989097
LSSLTVRGRSW	11	Unmodified	_LSSLTVRGRSW_					0	0	0		ENST00000422053.3_1_20:368928-376885:+|nuORF	ENST00000422053.3_1_20:368928-376885:+|nuORF	ENST00000422053.3_1_20:368928-376885:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	421.6382751464844	3	421.238566	1260.69387	-0.039917	-1.6814E-05	-0.23745	-0.00010002	-0.27737	-0.00011684	421.2384988730462	42.674	0.4069	43.446	43.116	43.523	0.7724					16	7	3	0	0	0	0.57632	1	15872	15872		25.155	3.9136	1	4787100			34074	11744	24907	25080	33162	33162					0.07394982065989097
LSSMADPNCY	10	Unmodified	_LSSMADPNCY_					0	0	0			REV__nc|ENSG00000137812|Q8NG31-3|KNL1	REV__nc|ENSG00000137812|Q8NG31-3|KNL1	MSMS	A375_MHC_IP_R2	2	550.7388916015625	2	550.722992	1099.43143	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.392	1	53.144	52.644	53.644	0.75225								0	0	0	0.15435	1	19747	19747		6.7232	0.96273	1		+		34075	19035	24908	25081	33163	33163					-0.11430723056469105
LSSMEMQTMW	10	Unmodified	_LSSMEMQTMW_					0	0	0			REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	MSMS	A375_MHC_IP_R1	1	622.1847534179688	2	622.261427	1242.5083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.371	1	50.371	49.871	50.871	0								0	0	0	0.14673	1	17844	17844		24.021	4.7636	1		+		34076	20096	24909	25082	33164	33164					-0.1032524783165627
LSSMFRELGQ	10	Unmodified	_LSSMFRELGQ_					0	0	0		nc|ENSG00000178217|Q5SQS7-3|SH2D4B;nc|ENSG00000178217|Q5SQS7-2|SH2D4B;nc|ENSG00000178217|Q5SQS7|SH2D4B;ENSG00000178217|ENST00000646907|SH2D4B	nc|ENSG00000178217|Q5SQS7-3|SH2D4B	nc|ENSG00000178217|Q5SQS7-3|SH2D4B	MULTI-SECPEP	A375_MHC_IP_R1	1	584.2481079101562	2	584.294973	1166.57539	-0.31172	-0.00018214	-3.1072	-0.0018155	-3.4189	-0.0019977	584.7941835898087	64.877	0.25426	64.877	64.649	64.903	0					5	4	2	0	0	0	0.91556	1	23402	23402		6.2058	0	1	785810			34077	8144	24910	25083	33165	33165					-0.0012313323402395326
LSSMLCIPLW	10	Unmodified	_LSSMLCIPLW_					0	0	0		ENST00000464828.1_1_3:10975690-10977074:+|nuORF;ENSG00000132164|ENST00000254488|SLC6A11	ENST00000464828.1_1_3:10975690-10977074:+|nuORF	ENST00000464828.1_1_3:10975690-10977074:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	387.6014404296875	3	388.204818	1161.59262	0.34533	0.00013406	0.15273	5.9289E-05	0.49806	0.00019335	388.20482067425695	70.367	0.46059	70.367	70.085	70.545	0					12	8	2	0	0	0	0.94598	1	25527	25527		5.7834	5.2203	1	1526600			34078	4377	24911	25084	33166	33166					0.018290710474047955
LSSMVRELEL	10	Unmodified	_LSSMVRELEL_					0	0	0			REV__ENST00000475860.1_1_2:242038724-242041688:-|nuORF	REV__ENST00000475860.1_1_2:242038724-242041688:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	393.28143310546875	3	392.88128	1175.62201	0.17364	6.8218E-05	0.088413	3.4736E-05	0.26205	0.00010295	393.21553772251673	37.505	0.7148	37.505	37.249	37.964	0					23	13	2	0	0	0	0.63381	1	12686	12686		17.049	0	1	3672500	+		34079	18186	24912	25085	33167	33167					0.04122306597264469
LSSMVRELEL	10	Unmodified	_LSSMVRELEL_					0	0	0			REV__ENST00000475860.1_1_2:242038724-242041688:-|nuORF	REV__ENST00000475860.1_1_2:242038724-242041688:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	393.28118896484375	3	392.88128	1175.62201	-0.57233	-0.00022486	0.23129	9.0871E-05	-0.34104	-0.00013399	392.8814896698983	36.461	0.66017	37.232	37.056	37.716	0.7709					22	12	2	0	0	0	0.63381	1	13322	13322		32.898	2.1943	1	4499900	+		34080	18186	24912	25085	33168	33168					0.04122306597264469
LSSNGNPITI	10	Unmodified	_LSSNGNPITI_					0	0	0		ENST00000425487.2_1_X:46299833-46299950:-|nuORF	ENST00000425487.2_1_X:46299833-46299950:-|nuORF	ENST00000425487.2_1_X:46299833-46299950:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	508.6800231933594	2	508.274564	1014.53457	-0.31582	-0.00016052	0.20093	0.00010213	-0.11489	-5.8395E-05	508.2746169225582	51.16	0.60982	51.16	50.915	51.525	0					19	11	2	0	0	0	0.15934	2	18091	18091;18222		53.404	5.6553	1	27478000			34081	11790	24913	25086	33169;33170	33169					0.027888487179893673
LSSNLIALW	9	Unmodified	_LSSNLIALW_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|155|1|anti-sense;L1P2_dup1208|chr11:88107546-88109129:-|1.8698902225432863|0.3715451182625647|2.33|469.0|53|1|anti-sense	L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|155|1|anti-sense	L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|155|1|anti-sense	MULTI-SECPEP	A375_MHC_IP_R2	2	509.1921081542969	2	508.792392	1015.57023	-0.67131	-0.00034156	-0.73029	-0.00037156	-1.4016	-0.00071312	508.79219888042866	88.793	0.50713	89.525	89.228	89.735	0.7318					18	9	3	0	0	0	0.4465	1	33781	33781		38.176	0	1	2827400			34082	14267	24914	25087	33171	33171					0.06306930965638458
LSSNYLRY	8	Unmodified	_LSSNYLRY_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-MSMS	A375_MHC_IP_R1	1	508.663818359375	2	508.263999	1014.51345	-0.48968	-0.00024889	0.3277	0.00016656	-0.16199	-8.2332E-05	508.2638981489888	76.571	0.55904	76.571	76.319	76.878	0					29	10	3	0	0	0	0.7256	1	27908	27908		26.884	3.7352	1	5650200	+		34083	22122	24915	25088	33172	33172					0.006768834091303688
LSSPFLKGF	9	Unmodified	_LSSPFLKGF_					0	0	0		nc|ENSG00000176087|L0R6Q1|SLC35A4	nc|ENSG00000176087|L0R6Q1|SLC35A4	nc|ENSG00000176087|L0R6Q1|SLC35A4	MULTI-SECPEP	A375_MHC_IP_R2	2	497.64727783203125	2	498.28166	994.548768	-0.4409	-0.00021969	-0.032307	-1.6098E-05	-0.4732	-0.00023579	498.2816018108716	92.605	0.75908	93.344	93.038	93.797	0.73901					21	14	2	0	0	0	0.28216	1	35225	35225		41.84	11.203	1	2027500			34084	14780	24916	25089	33173	33173					0.05127545936943534
LSSPFLKGF	9	Unmodified	_LSSPFLKGF_					0	0	0		nc|ENSG00000176087|L0R6Q1|SLC35A4	nc|ENSG00000176087|L0R6Q1|SLC35A4	nc|ENSG00000176087|L0R6Q1|SLC35A4	MULTI-MATCH	A375_MHC_IP_R1	1		2	498.28166	994.548768	-0.28506	-0.00014204	0.062524	3.1155E-05	-0.22254	-0.00011089	498.28153302373113	93.508	0.56159	93.508	93.125	93.686	0	0.082434	5.1537E-05	NaN	41.84	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2662700			34085	14780	24916	25089							0.05127545936943534
LSSPGTKQF	9	Unmodified	_LSSPGTKQF_					0	0	0			REV__ENSG00000139354|ENST00000547754|GAS2L3	REV__ENSG00000139354|ENST00000547754|GAS2L3	MULTI-SECPEP	A375_MHC_IP_R2	2	483.15777587890625	2	482.758549	963.502546	-0.72544	-0.00035021	-0.57011	-0.00027522	-1.2955	-0.00062543	482.75850652388857	41.399	0.66101	42.174	41.946	42.607	0.77451					21	12	2	0	0	0	0.37663	1	15377	15377		43.772	19.752	1	4087300	+		34086	19153	24917	25090	33174	33174					0.019334810348595965
LSSPIDQKLY	10	Unmodified	_LSSPIDQKLY_					0	0	0		TENM4|p.E1585K|1|0.51|ENSG00000149256|chr11:78701860-78701860|C/T|missense_variant	TENM4|p.E1585K|1|0.51|ENSG00000149256|chr11:78701860-78701860|C/T|missense_variant	TENM4|p.E1585K|1|0.51|ENSG00000149256|chr11:78701860-78701860|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	582.533935546875	2	582.318971	1162.62339	-0.07109	-4.1397E-05	0.076125	4.4329E-05	0.0050354	2.9322E-06	582.31965078533	51.582	0.35493	51.582	51.373	51.728	0					10	5	3	0	0	0	0.70793	1	18281	18281		8.7454	0.58988	1	2117400			34087	29326	24918	25091	33175	33175					0.04858263957657982
LSSQYSNPD	9	Unmodified	_LSSQYSNPD_					0	0	0			REV__tr|U7ST90|U7ST90_FUSNUYkuDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01333PE=4SV=1	REV__tr|U7ST90|U7ST90_FUSNUYkuDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01333PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	506.12420654296875	2	505.724904	1009.43525	-0.72499	-0.00036664	-0.29931	-0.00015137	-1.0243	-0.00051801	505.7247872521518	41.565	0.66563	41.565	41.266	41.932	0					18	12	2	0	0	0	0.75466	1	14364	14364		1.8442	0	1	3840700	+		34088	28464	24919	25092	33176	33176					-0.069085939667616
LSSRGRRRGY	10	Unmodified	_LSSRGRRRGY_					0	0	0			REV__nc|ENSG00000137449|Q7Z5Q1-7|CPEB2	REV__nc|ENSG00000137449|Q7Z5Q1-7|CPEB2	MULTI-SECPEP	A375_MHC_IP_R1	1	603.5679321289062	2	604.341969	1206.66939	-0.10833	-6.5466E-05	-0.35463	-0.00021432	-0.46296	-0.00027979	604.3417178023554	108.91	0.50668	108.91	108.76	109.27	0					13	9	2	0	0	0	0.93799	1	39936	39936		3.5965	0	1	1302500	+		34089	19007	24920	25093	33177	33177					0.07431766703143694
LSSRLQLL	8	Unmodified	_LSSRLQLL_					0	0	0		ENST00000296417.5_1_4:100869650-100870027:-|nuORF	ENST00000296417.5_1_4:100869650-100870027:-|nuORF	ENST00000296417.5_1_4:100869650-100870027:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	465.692138671875	2	465.292559	928.570566	0.0044443	2.0679E-06	-0.38625	-0.00017972	-0.38181	-0.00017765	465.2924436265482	43.032	0.5607	43.032	42.79	43.351	0					19	10	3	0	0	0	0.57209	1	14960	14960		46.021	0	1	2227300			34090	10508	24921	25094	33178	33178					0.10342350685516521
LSSRRTKAP	9	Unmodified	_LSSRRTKAP_					0	0	0		ENST00000442751.1_1_1:112532780-112533510:+|nuORF;ENST00000428461.1_1_1:112532936-112533510:+|nuORF	ENST00000442751.1_1_1:112532780-112533510:+|nuORF	ENST00000442751.1_1_1:112532780-112533510:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9800109863281	2	508.30399	1014.59343	-0.68201	-0.00034667	-0.030059	-1.5279E-05	-0.71206	-0.00036195	508.3038336006868	70.235	0.55753	70.969	70.642	71.2	0.73421					16	10	2	0	0	0	0.54812	1	26700	26700		24.991	24.991	1	1683600			34091	11835	24922	25095	33179	33179					0.08671369802982554
LSSRRWSPF	9	Unmodified	_LSSRRWSPF_					0	0	0			REV__nc|ENSG00000160683|P32302-2|CXCR5	REV__nc|ENSG00000160683|P32302-2|CXCR5	MULTI-SECPEP	A375_MHC_IP_R1	1	568.6848754882812	2	568.30399	1134.59343	-0.45881	-0.00026075	0.50832	0.00028888	0.049505	2.8134E-05	568.3041705613092	40.979	1.012	40.979	40.559	41.571	0					34	19	3	0	0	0	0.46045	1	14299	14299		17.113	0	1	5632600	+		34092	20178	24923	25096	33180	33180					0.031513698029812076
LSSSQHCYYTA	11	Unmodified	_LSSSQHCYYTA_					0	0	0			REV__nc|ENSG00000211611|A0A0C4DH24|IGKV6-21	REV__nc|ENSG00000211611|A0A0C4DH24|IGKV6-21	MULTI-MSMS	A375_MHC_IP_R1	1	630.6719970703125	2	630.271695	1258.52884	-0.61246	-0.00038601	-0.086371	-5.4437E-05	-0.69883	-0.00044045	630.271740682929	43.777	0.61084	43.777	43.502	44.113	0					22	11	3	0	0	0	0.63737	1	15226	15226		20.415	2.0414	1	4315500	+		34093	27463	24924	25097	33181	33181					-0.09008617855965895
LSSSQRYF	8	Unmodified	_LSSSQRYF_					0	0	0			REV__ZNF256|p.S275F|1|0.28|ENSG00000152454|chr19:57941984-57941984|G/A|missense_variant	REV__ZNF256|p.S275F|1|0.28|ENSG00000152454|chr19:57941984-57941984|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	493.6542663574219	2	494.248349	986.482145	-0.83839	-0.00041437	0.76333	0.00037727	-0.075056	-3.7096E-05	494.2482912060366	33.368	0.20391	34.12	34.043	34.247	0.75225					5	3	2	0	0	0	0.8824	1	11956	11956		23.148	6.0355	1	859220	+		34094	29032	24925	25098	33182	33182					-0.011636896249569872
LSSSRIKKV	9	Unmodified	_LSSSRIKKV_					0	0	0		ENSG00000152402|ENST00000526355|GUCY1A2;nc|ENSG00000152402|P33402-3|GUCY1A2;nc|ENSG00000152402|P33402-2|GUCY1A2;GUCY1A2|p.S719F|1|0.41|ENSG00000152402|chr11:106687592-106687592|G/A|missense_variant	ENSG00000152402|ENST00000526355|GUCY1A2	ENSG00000152402|ENST00000526355|GUCY1A2	MSMS	A375_MHC_IP_R1	1	509.1470947265625	2	509.324391	1016.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.145	1	97.145	96.645	97.645	0								0	0	0	0.1535	1	35694	35694		15.847	0.078963	1				34095	5962	24926	25099	33183	33183					0.12657711122608362
LSSSVLREL	9	Unmodified	_LSSSVLREL_					0	0	0			REV__ENST00000597537.1_2_19:23433131-23433182:-|nuORF	REV__ENST00000597537.1_2_19:23433131-23433182:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.6928405761719	2	502.292756	1002.57096	-0.41794	-0.00020993	-0.16453	-8.2641E-05	-0.58246	-0.00029257	502.2926516926863	61.223	0.91685	61.223	60.871	61.788	0					50	17	4	0	0	0	0.076731	1	22018	22018		80.676	0	1	57230000	+		34096	26482	24927	25100	33184	33184					0.06977725614717656
LSSSVLREL	9	Unmodified	_LSSSVLREL_					0	0	0			REV__ENST00000597537.1_2_19:23433131-23433182:-|nuORF	REV__ENST00000597537.1_2_19:23433131-23433182:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	502.6924743652344	2	502.292756	1002.57096	-0.93741	-0.00047085	-0.051306	-2.5771E-05	-0.98872	-0.00049663	502.29273823156194	60.333	1.117	61.078	60.601	61.718	0.74503					56	21	4	0	0	0	0.035151	1	22782	22782		93.938	0	1	75909000	+		34097	26482	24927	25100	33185	33185					0.06977725614717656
LSSTSTFIQL	10	Unmodified	_LSSTSTFIQL_					0	0	0		ENST00000544944.6_1_19:45542792-45543053:+|nuORF	ENST00000544944.6_1_19:45542792-45543053:+|nuORF	ENST00000544944.6_1_19:45542792-45543053:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	549.1983032226562	2	548.797872	1095.58119	-0.79721	-0.00043751	1.2499	0.00068595	0.45271	0.00024844	548.7984747102271	27.799	0.30296	28.477	28.301	28.604	0.67857					7	5	2	0	0	0	0.91442	1	9579	9579		16.149	6.766	1	2472400			34098	13318	24928	25101	33186	33186					0.03722288549283803
LSSVDQPLKI	10	Unmodified	_LSSVDQPLKI_					0	0	0		nc|ENSG00000077549|P47756-1|CAPZB;ENSG00000077549|ENST00000264202|CAPZB;ENST00000482808.1_1_1:19700942-19811932:-|nuORF	nc|ENSG00000077549|P47756-1|CAPZB	nc|ENSG00000077549|P47756-1|CAPZB	MULTI-SECPEP	A375_MHC_IP_R1	1	550.7206420898438	2	550.321514	1098.62847	-0.71623	-0.00039416	0.020726	1.1406E-05	-0.69551	-0.00038275	550.3212885085929	66.205	0.50723	66.205	65.921	66.428	0					19	9	3	0	0	0	0.91442	1	23966	23966		11.495	1.4208	1	2469300			34099	1659	24929	25102	33187	33187					0.08310567820262804
LSSVDQPLKI	10	Unmodified	_LSSVDQPLKI_					0	0	0		nc|ENSG00000077549|P47756-1|CAPZB;ENSG00000077549|ENST00000264202|CAPZB;ENST00000482808.1_1_1:19700942-19811932:-|nuORF	nc|ENSG00000077549|P47756-1|CAPZB	nc|ENSG00000077549|P47756-1|CAPZB	MULTI-SECPEP	A375_MHC_IP_R2	2	550.720947265625	2	550.321514	1098.62847	-0.84743	-0.00046636	-0.26266	-0.00014455	-1.1101	-0.00061091	550.3212144172147	65.154	0.45651	65.892	65.613	66.069	0.73811					16	8	3	0	0	0	0.77204	1	24695	24695		21.537	10.042	1	2457600			34100	1659	24929	25102	33188	33188					0.08310567820262804
LSSVPPQK	8	Unmodified	_LSSVPPQK_					0	0	0			REV__nc|ENSG00000153820|Q2M3C7-2|SPHKAP	REV__nc|ENSG00000153820|Q2M3C7-2|SPHKAP	MSMS	A375_MHC_IP_R2	2	428.2785339355469	2	428.25036	854.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.208	1	55.959	55.459	56.459	0.75075								0	0	0	0.16876	1	20852	20852		10.074	2.1638	1		+		34101	19850	24930	25103	33189	33189					0.053103998687561216
LSSVTKVLLL	10	Unmodified	_LSSVTKVLLL_					0	0	0		nc|ENSG00000119326|Q9UBT7-3|CTNNAL1;nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1	nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	MULTI-SECPEP	A375_MHC_IP_R2	2	537.2062377929688	2	536.85245	1071.69035	-0.90039	-0.00048338	1.022	0.00054865	0.12159	6.5275E-05	536.853065872862	74.297	0.35693	75.035	74.857	75.214	0.73752					8	6	2	0	0	0	0.93799	1	28243	28243		3.5965	0.31518	1	885700			34102	3583	24931	25104	33190	33190					0.1573691923942988
LSSWDYSY	8	Unmodified	_LSSWDYSY_					0	0	0		ENST00000497010.1_1_1:45435697-45452248:-|nuORF	ENST00000497010.1_1_1:45435697-45452248:-|nuORF	ENST00000497010.1_1_1:45435697-45452248:-|nuORF	MSMS	A375_MHC_IP_R1	1	510.6318054199219	2	510.71909	1019.42363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.803	1	66.803	66.303	67.303	0								0	0	0	0.16876	1	24202	24202		13.508	0.46542	1				34103	12735	24932	25105	33191	33191					-0.08530790990096193
LSSYASHP	8	Unmodified	_LSSYASHP_					0	0	0		ENSG00000141448|ENST00000269216|GATA6	ENSG00000141448|ENST00000269216|GATA6	ENSG00000141448|ENST00000269216|GATA6	MULTI-SECPEP	A375_MHC_IP_R1	1	860.6703491210938	1	861.410108	860.402832	-0.10535	-9.0747E-05	-0.601	-0.00051771	-0.70635	-0.00060846	861.4091872125388	54.202	0.50337	54.202	53.912	54.415	0					14	9	2	0	0	0	0.94479	1	19314	19314		4.756	0	1	1540500			34104	5240	24933	25106	33192	33192					-0.032953365791058786
LSSYASHP	8	Unmodified	_LSSYASHP_					0	0	0		ENSG00000141448|ENST00000269216|GATA6	ENSG00000141448|ENST00000269216|GATA6	ENSG00000141448|ENST00000269216|GATA6	MULTI-MATCH	A375_MHC_IP_R2	2		1	861.410108	860.402832	-1.1945	-0.0010289	0.38039	0.00032767	-0.8141	-0.00070127	861.4100648497117	53.393	0.5114	54.144	53.842	54.353	0.75105	-0.029163	0.00032215	NaN	4.756	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1840500			34105	5240	24933	25106							-0.032953365791058786
LSTASNILY	9	Unmodified	_LSTASNILY_					0	0	0		ENST00000477573.1_1_20:55091947-55092040:+|nuORF	ENST00000477573.1_1_20:55091947-55092040:+|nuORF	ENST00000477573.1_1_20:55091947-55092040:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	491.6663513183594	2	491.266207	980.517862	-0.44105	-0.00021667	0.33643	0.00016528	-0.10462	-5.1396E-05	491.26635476748675	91.376	0.50627	91.376	91.048	91.554	0					18	9	2	0	0	0	0.29981	1	33534	33534		30.637	1.555	1	2520500			34106	12444	24934	25107	33193	33193					0.02682347832035248
LSTAVRLSA	9	Unmodified	_LSTAVRLSA_					0	0	0			REV__ENSG00000070601|ENST00000377765|FRMPD1	REV__ENSG00000070601|ENST00000377765|FRMPD1	MULTI-SECPEP	A375_MHC_IP_R1	1	459.6742248535156	2	459.274367	916.53418	-0.016999	-7.8071E-06	-0.17111	-7.8585E-05	-0.18811	-8.6392E-05	459.27421966453994	35.702	0.4099	35.702	35.522	35.932	0					13	7	2	0	0	0	0.61452	1	11923	11923		15.248	2.206	1	4180800	+		34107	16577	24935	25108	33194	33194					0.07257473788808966
LSTCQIATR	9	Unmodified	_LSTCQIATR_					0	0	0		nc|ENSG00000079156|Q9BZF3-6|OSBPL6	nc|ENSG00000079156|Q9BZF3-6|OSBPL6	nc|ENSG00000079156|Q9BZF3-6|OSBPL6	MSMS	A375_MHC_IP_R1	1	496.69146728515625	2	496.763309	991.512065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.517	1	44.517	44.017	45.017	0								0	0	0	0.14851	1	15536	15536		24.021	5.8856	1				34108	14487	24936	25109	33195	33195					0.01596926048739533
LSTDRILF	8	Unmodified	_LSTDRILF_					0	0	0			REV__nc|ENSG00000167130|Q86YN1-2|DOLPP1	REV__nc|ENSG00000167130|Q86YN1-2|DOLPP1	MULTI-SECPEP	A375_MHC_IP_R2	2	483.1761474609375	2	482.776742	963.538931	-0.89718	-0.00043314	0.21375	0.00010319	-0.68343	-0.00032995	482.77663121207814	60.286	0.40909	61.031	60.751	61.16	0.74503					13	7	3	0	0	0	0.55873	1	22860	22860		49.933	0	1	1919200	+		34109	20736	24937	25110	33196	33196					0.05570357931571834
LSTDRILF	8	Unmodified	_LSTDRILF_					0	0	0			REV__nc|ENSG00000167130|Q86YN1-2|DOLPP1	REV__nc|ENSG00000167130|Q86YN1-2|DOLPP1	MULTI-MATCH	A375_MHC_IP_R1	1		2	482.776742	963.538931	-0.37954	-0.00018323	-0.25606	-0.00012362	-0.6356	-0.00030685	482.7765738382019	61.201	0.40842	61.201	60.922	61.331	0	0.08498	-0.00015645	NaN	49.933	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1565500	+		34110	20736	24937	25110							0.05570357931571834
LSTEKDTHF	9	Unmodified	_LSTEKDTHF_					0	0	0		NDNF|p.V161I|1|0.26|ENSG00000173376|chr4:121037490-121037490|C/T|missense_variant;NDNF|p.D149N|1|0.22|ENSG00000173376|chr4:121037526-121037526|C/T|missense_variant;ENSG00000173376|ENST00000379692|NDNF	NDNF|p.V161I|1|0.26|ENSG00000173376|chr4:121037490-121037490|C/T|missense_variant	NDNF|p.V161I|1|0.26|ENSG00000173376|chr4:121037490-121037490|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	539.207763671875	2	539.264196	1076.51384	-0.82485	-0.00044481	-0.0057154	-3.0821E-06	-0.83057	-0.0004479	539.264070106748	86.657	0.86029	86.657	86.325	87.186	0					38	16	4	0	0	0	0.6898	1	31675	31675		7.9102	0	1	5042700			34111	7792	24938	25111	33197	33197					-0.021357416616638147
LSTERLNY	8	Unmodified	_LSTERLNY_					0	0	0			REV__tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1	REV__tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	498.2419128417969	2	498.261456	994.50836	-0.45188	-0.00022515	0.11751	5.855E-05	-0.33437	-0.0001666	498.2614972024996	47.138	0.81764	47.138	46.85	47.668	0					35	15	3	0	0	0	0.75805	1	16767	16767		18.135	1.1927	1	6629900	+		34112	28173	24939	25112	33198	33198					0.010885795465128467
LSTESGEYSP	10	Unmodified	_LSTESGEYSP_					0	0	0			REV__ENSG00000132357|ENST00000254691|CARD6	REV__ENSG00000132357|ENST00000254691|CARD6	MULTI-SECPEP	A375_MHC_IP_R1	1	357.929443359375	3	357.160988	1068.46113	-0.14574	-5.2053E-05	0.857	0.00030609	0.71126	0.00025403	357.1613230904336	27.002	0.5029	27.002	26.878	27.381	0					14	9	2	0	0	0	0.92957	1	8136	8136		3.3196	0.82116	1	3940400	+		34113	18646	24940	25113	33199	33199					-0.07035744515110309
LSTFSPIRL	9	Unmodified	_LSTFSPIRL_					0	0	0		ENST00000536896.2_1_1:26145941-26146436:-|nuORF;ENST00000442055.5_1_1:26144159-26146178:-|nuORF	ENST00000536896.2_1_1:26145941-26146436:-|nuORF	ENST00000536896.2_1_1:26145941-26146436:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	517.7050170898438	2	517.305667	1032.59678	-0.84652	-0.00043791	-0.59737	-0.00030902	-1.4439	-0.00074693	517.3054335824071	70.875	5.8895	71.609	71.149	77.038	0.73421					312	115	6	0	0	0	0.037683	1	27460	27460		69.105	1.2667	1	4190899999.9999995			34114	13242	24941	25114	33200	33200					0.08178619856994374
LSTGEIHAF	9	Unmodified	_LSTGEIHAF_					0	0	0		ENSG00000162063|ENST00000397066|CCNF	ENSG00000162063|ENST00000397066|CCNF	ENSG00000162063|ENST00000397066|CCNF	MULTI-MSMS	A375_MHC_IP_R1	1	487.6814880371094	2	487.750724	973.486896	-0.10246	-4.9976E-05	-0.89619	-0.00043712	-0.99865	-0.00048709	487.75002936189236	35.392	0.71465	35.392	35.167	35.881	0					25	13	3	0	0	0	0.63811	1	11676	11676		12.532	0.89125	1	5459300			34115	6505	24942	25115	33201	33201					-0.0009080548219344564
LSTGLDMVGL	10	Unmodified	_LSTGLDMVGL_					0	0	0		ENSG00000136750|ENST00000376261|GAD2	ENSG00000136750|ENST00000376261|GAD2	ENSG00000136750|ENST00000376261|GAD2	MULTI-SECPEP	A375_MHC_IP_R1	1	503.6673583984375	2	503.267893	1004.52123	-0.10134	-5.1001E-05	-0.35839	-0.00018036	-0.45973	-0.00023137	503.26770348219367	48.115	0.7076	48.115	47.668	48.375	0					28	13	3	0	0	0	0.8125	1	16919	16919		13.042	0	1	4139300			34116	4813	24943	25116	33202	33202					0.019152746144072808
LSTGLWHN	8	Unmodified	_LSTGLWHN_					0	0	0		nc|ENSG00000136492|Q9BX63-2|BRIP1;ENSG00000136492|ENST00000259008|BRIP1	nc|ENSG00000136492|Q9BX63-2|BRIP1	nc|ENSG00000136492|Q9BX63-2|BRIP1	MULTI-MSMS	A375_MHC_IP_R2	2	464.67877197265625	2	464.237784	926.461016	-0.84809	-0.00039372	-0.1216	-5.645E-05	-0.96969	-0.00045017	464.23756557946746	51.732	0.40646	52.485	52.219	52.626	0.75225					11	7	2	0	0	0	0.77488	1	19489	19489		13.508	0	1	1057700			34117	4794	24944	25117	33203	33203					-0.005156549338153127
LSTGLWHN	8	Unmodified	_LSTGLWHN_					0	0	0		nc|ENSG00000136492|Q9BX63-2|BRIP1;ENSG00000136492|ENST00000259008|BRIP1	nc|ENSG00000136492|Q9BX63-2|BRIP1	nc|ENSG00000136492|Q9BX63-2|BRIP1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	464.237784	926.461016	-0.26487	-0.00012296	-0.70831	-0.00032882	-0.97318	-0.00045179	464.23754661284266	52.446	0.40575	52.446	52.237	52.643	0	-0.019248	-0.00021913	NaN	13.508	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1653200			34118	4794	24944	25117							-0.005156549338153127
LSTGLWHN	8	Unmodified	_LSTGLWHN_					0	0	0		nc|ENSG00000136492|Q9BX63-2|BRIP1;ENSG00000136492|ENST00000259008|BRIP1	nc|ENSG00000136492|Q9BX63-2|BRIP1	nc|ENSG00000136492|Q9BX63-2|BRIP1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	464.237784	926.461016	-0.84809	-0.00039372	-0.1216	-5.645E-05	-0.96969	-0.00045017	464.23756557946746	51.732	0.40646	52.485	52.219	52.626	0.75225	0.019248	0.00032562	NaN	13.508	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1057700			34119	4794	24944	25117							-0.005156549338153127
LSTIDRELL	9	Unmodified	_LSTIDRELL_					0	0	0		ENSG00000013275|ENST00000157812|PSMC4;ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;ENST00000601697.5_1_19:40477100-40486546:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4	ENSG00000013275|ENST00000157812|PSMC4	ENSG00000013275|ENST00000157812|PSMC4	MULTI-SECPEP	A375_MHC_IP_R2	2	529.6946411132812	2	530.305864	1058.59717	-0.92804	-0.00049214	1.1849	0.00062837	0.25688	0.00013622	530.807805654093	61.35	0.25195	62.095	62.02	62.272	0.74503					6	4	2	0	0	0	0.73363	1	23260	23260		6.7232	0	1	655790			34120	1016	24945	25118	33204	33204					0.07021994786191499
LSTIKKRSYKF	11	Unmodified	_LSTIKKRSYKF_					0	0	0			REV__ENST00000524003.1_1_8:92080798-92080900:-|nuORF	REV__ENST00000524003.1_1_8:92080798-92080900:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	457.6823425292969	3	457.61	1369.80817	-0.52558	-0.00024051	-2.123	-0.00097151	-2.6486	-0.001212	457.60920310816584	134.95	1.17	134.95	134.73	135.9	0					38	22	2	0	0	0	0.73807	1	52003	52003		1.2148	0.588	1	1619500	+		34121	25749	24946	25119	33205	33205					0.1380587182804902
LSTIKKRSYKF	11	Unmodified	_LSTIKKRSYKF_					0	0	0			REV__ENST00000524003.1_1_8:92080798-92080900:-|nuORF	REV__ENST00000524003.1_1_8:92080798-92080900:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	457.6823425292969	3	457.61	1369.80817	-0.52558	-0.00024051	-2.123	-0.00097151	-2.6486	-0.001212	457.60920310816584	134.95	1.17	134.95	134.73	135.9	0					38	22	2	0	0	0	1.0012	1	52003	52003		1.2148	0.588	1	1619500	+		34122	25749	24946	25119	33206	33206					0.1380587182804902
LSTILKAIHF	10	Unmodified	_LSTILKAIHF_					0	0	0		nc|ENSG00000113456|O60671-3|RAD1;ENST00000506311.1_1_5:34914790-34915562:-|nuORF;nc|ENSG00000113456|O60671-2|RAD1;ENSG00000113456|ENST00000382038|RAD1	nc|ENSG00000113456|O60671-3|RAD1	nc|ENSG00000113456|O60671-3|RAD1	MSMS	A375_MHC_IP_R2	2	381.6086730957031	3	381.569253	1141.68593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.885	1	37.656	37.156	38.156	0.7709								0	0	0	0.15438	1	13470	13470		6.6304	1.3335	1				34123	3153	24947	25120	33207	33207					0.12075454816499587
LSTILRRLF	9	Unmodified	_LSTILRRLF_					0	0	0			REV__ENSG00000173769|ENST00000309765|TOPAZ1	REV__ENSG00000173769|ENST00000309765|TOPAZ1	MSMS	A375_MHC_IP_R2	2	559.7880249023438	2	559.855858	1117.69716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.996	1	99.756	99.256	100.26	0.75977								0	0	0	0.15486	1	37554	37554		7.9102	0	1		+		34124	21247	24948	25121	33208	33208					0.1430227691064374
LSTKAPVSI	9	Unmodified	_LSTKAPVSI_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	A375_MHC_IP_R2	2	458.6789855957031	2	458.279118	914.543683	-0.31845	-0.00014594	-0.16169	-7.4101E-05	-0.48014	-0.00022004	458.278981884377	102.93	1.0178	103.69	103.48	104.5	0.76428					32	19	2	0	0	0	0.05754	1	38979	38979		61.357	9.0891	1	4245700	+		34125	21639	24949	25122	33209	33209					0.08299242074338053
LSTKEKNRMG	10	Unmodified	_LSTKEKNRMG_					0	0	0			REV__ENSG00000124251|ENST00000372726|TP53TG5	REV__ENSG00000124251|ENST00000372726|TP53TG5	MSMS	A375_MHC_IP_R1	1	388.6059875488281	3	388.54489	1162.61284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.573	1	27.573	27.073	28.073	0								0	0	0	0.15288	1	8384	8384		7.0371	1.9896	1		+		34126	18291	24950	25123	33210	33210					0.038039580315626154
LSTKINLS	8	Unmodified	_LSTKINLS_					0	0	0		ENST00000477063.5_1_3:122928052-122962678:+|nuORF;ENSG00000121542|ENST00000492595|SEC22A	ENST00000477063.5_1_3:122928052-122962678:+|nuORF	ENST00000477063.5_1_3:122928052-122962678:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	875.3137817382812	1	875.519659	874.512382	-0.80028	-0.00070066	0.38487	0.00033696	-0.41541	-0.0003637	875.520068847981	49.889	0.35907	50.643	50.394	50.753	0.75406					9	6	2	0	0	0	0.91117	1	18718	18718		27.629	3.6082	1	2049000			34127	3723	24951	25124	33211	33211					0.07010669040232642
LSTKQYQELTY	11	Unmodified	_LSTKQYQELTY_					0	0	0			REV__ENSG00000138792|ENST00000265162|ENPEP	REV__ENSG00000138792|ENST00000265162|ENPEP	MULTI-MSMS	A375_MHC_IP_R1	1	458.9697265625	3	458.569759	1372.68745	-0.31943	-0.00014648	-0.20735	-9.5084E-05	-0.52678	-0.00024157	458.56964883785037	32.074	0.51336	32.074	31.87	32.383	0					12	9	2	0	0	0	0.71476	1	10344	10344		8.2864	8.2864	1	4815100	+		34128	19123	24952	25125	33212	33212					0.016009993239549658
LSTKQYQELTY	11	Unmodified	_LSTKQYQELTY_					0	0	0			REV__ENSG00000138792|ENST00000265162|ENPEP	REV__ENSG00000138792|ENST00000265162|ENPEP	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	458.569759	1372.68745	-0.31943	-0.00014648	-0.20735	-9.5084E-05	-0.52678	-0.00024157	458.56964883785037	32.074	0.51336	32.074	31.87	32.383	0	-0.051732	-9.1072E-05	NaN	8.2864	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4815100	+		34129	19123	24952	25125							0.016009993239549658
LSTLGRVY	8	Unmodified	_LSTLGRVY_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;ENSG00000153827|ENST00000675903|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	A375_MHC_IP_R1	1	455.16375732421875	2	454.763635	907.512717	-0.39095	-0.00017779	0.3706	0.00016854	-0.020346	-9.2526E-06	454.7637597300207	46.935	0.56405	46.935	46.699	47.263	0					29	10	4	0	0	0	0.16365	1	16472	16472		81.89	9.9679	1	14722000			34130	6043	24953	25126	33213	33213					0.055260887600866226
LSTLGRVY	8	Unmodified	_LSTLGRVY_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;ENSG00000153827|ENST00000675903|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-SECPEP	A375_MHC_IP_R2	2	455.1632995605469	2	454.763635	907.512717	-0.1487	-6.7623E-05	-0.039818	-1.8108E-05	-0.18852	-8.5731E-05	454.7635793932318	46.065	0.70969	46.83	46.552	47.262	0.76519					27	13	3	0	0	0	0.32469	1	17222	17222		74.929	14.539	1	16955000			34131	6043	24953	25126	33214	33214					0.055260887600866226
LSTLKHLKF	9	Unmodified	_LSTLKHLKF_					0	0	0			REV__POF1B|p.E505K|1|0.33|ENSG00000124429|chrX:85304396-85304396|C/T|missense_variant	REV__POF1B|p.E505K|1|0.33|ENSG00000124429|chrX:85304396-85304396|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	362.9549865722656	3	362.893848	1085.65972	0.12477	4.5278E-05	0.21395	7.7642E-05	0.33872	0.00012292	363.22809944604893	64.725	0.30497	64.725	64.495	64.8	0					8	5	2	0	0	0	0.64808	1	23416	23416		7.609	2.7119	1	799170	+		34132	27817	24954	25127	33215	33215					0.12031185645037112
LSTLKHLKF	9	Unmodified	_LSTLKHLKF_					0	0	0			REV__POF1B|p.E505K|1|0.33|ENSG00000124429|chrX:85304396-85304396|C/T|missense_variant	REV__POF1B|p.E505K|1|0.33|ENSG00000124429|chrX:85304396-85304396|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	362.893848	1085.65972	0.12477	4.5278E-05	0.21395	7.7642E-05	0.33872	0.00012292	363.22809944604893	64.725	0.30497	64.725	64.495	64.8	0	0.16942	-6.7368E-05	NaN	7.609	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	799170	+		34133	27817	24954	25127							0.12031185645037112
LSTLLTSSVLY	11	Unmodified	_LSTLLTSSVLY_					0	0	0			REV__ENSG00000185294|ENST00000329196|SPPL2C	REV__ENSG00000185294|ENST00000329196|SPPL2C	MULTI-SECPEP	A375_MHC_IP_R1	1	398.95458984375	3	399.563945	1195.67001	0.18068	7.2194E-05	0.54296	0.00021695	0.72364	0.00028914	399.56392973283283	49.384	0.50796	49.384	49.184	49.692	0					18	9	3	0	0	0	0.92455	1	17454	17454		9.2438	3.4603	1	1085600	+		34134	21887	24955	25128	33216	33216					0.07999703788959778
LSTLLTSSVLY	11	Unmodified	_LSTLLTSSVLY_					0	0	0			REV__ENSG00000185294|ENST00000329196|SPPL2C	REV__ENSG00000185294|ENST00000329196|SPPL2C	MULTI-MSMS	A375_MHC_IP_R2	2	399.9640808105469	3	399.563945	1195.67001	-0.051669	-2.0645E-05	0.23924	9.5591E-05	0.18757	7.4946E-05	399.5639716510474	48.448	0.40363	49.205	49.03	49.434	0.75737					14	7	3	0	0	0	0.67989	1	18231	18231		9.7643	0	1	2539800	+		34135	21887	24955	25128	33217	33217					0.07999703788959778
LSTLPPPRRTR	11	Unmodified	_LSTLPPPRRTR_					0	0	0		ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3;ENST00000498057.1_1_3:48675640-48678188:-|nuORF;ENST00000461362.5_1_3:48675640-48681145:-|nuORF	ENSG00000008300|ENST00000164024|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	MULTI-MSMS	A375_MHC_IP_R2	2	647.7901611328125	2	647.391128	1292.7677	-0.4748	-0.00030738	-1.4109	-0.0009134	-1.8857	-0.0012208	647.390190365812	141.99	0.55627	142.02	141.77	142.33	0.030731					19	10	2	0	0	0	0.73795	1	55545	55545		1.3295	0	1	950950			34136	957	24956	25129	33218	33218					0.13302950228285226
LSTLPPPRRTR	11	Unmodified	_LSTLPPPRRTR_					0	0	0		ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3;ENST00000498057.1_1_3:48675640-48678188:-|nuORF;ENST00000461362.5_1_3:48675640-48681145:-|nuORF	ENSG00000008300|ENST00000164024|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	647.391128	1292.7677	-0.70662	-0.00045746	-1.1872	-0.00076856	-1.8938	-0.001226	647.3903301569503	141.99	0.7101	141.99	141.47	142.18	0	-0.016593	7.734E-05	NaN	1.3295	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1570600			34137	957	24956	25129							0.13302950228285226
LSTLPPPRRTR	11	Unmodified	_LSTLPPPRRTR_					0	0	0		ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3;ENST00000498057.1_1_3:48675640-48678188:-|nuORF;ENST00000461362.5_1_3:48675640-48681145:-|nuORF	ENSG00000008300|ENST00000164024|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	647.391128	1292.7677	-0.4748	-0.00030738	-1.4109	-0.0009134	-1.8857	-0.0012208	647.390190365812	141.99	0.55627	142.02	141.77	142.33	0.030731	0.016593	-0.00021233	NaN	1.3295	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	950950			34138	957	24956	25129							0.13302950228285226
LSTLPPREAR	10	Unmodified	_LSTLPPREAR_					0	0	0			REV__ENST00000393614.8_1_1:110527389-110528040:+|nuORF	REV__ENST00000393614.8_1_1:110527389-110528040:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	570.7608032226562	2	570.330205	1138.64586	-0.11839	-6.752E-05	-0.43994	-0.00025091	-0.55832	-0.00031843	570.3297118951914	149.65	0.95453	149.67	149.06	150.01	0.01825					85	46	3	0	0	0	0.7245	1	58106	58106		1.3295	1.3295	1	125550	+		34139	24296	24957	25130	33219	33219					0.08207908145936926
LSTLSWPLHV	10	Unmodified	_LSTLSWPLHV_					0	0	0			REV__ENSG00000205784|ENST00000650722|ARRDC5	REV__ENSG00000205784|ENST00000650722|ARRDC5	MULTI-SECPEP	A375_MHC_IP_R2	2	576.75927734375	2	576.824224	1151.63389	-0.016352	-9.4321E-06	-0.80005	-0.00046149	-0.81641	-0.00047092	576.8239460139656	100.89	0.66774	101.65	101.29	101.96	0.76278					16	12	2	0	0	0	0.9269	1	38142	38142		6.7232	3.7279	1	1945600	+		34140	22584	24958	25131	33220	33220					0.06414291402734307
LSTLTPLHIAA	11	Unmodified	_LSTLTPLHIAA_					0	0	0		nc|ENSG00000144504|Q9P2S6-2|ANKMY1;ENSG00000144504|ENST00000401804|ANKMY1;nc|ENSG00000144504|Q9P2S6-4|ANKMY1;nc|ENSG00000144504|Q9P2S6|ANKMY1	nc|ENSG00000144504|Q9P2S6-2|ANKMY1	nc|ENSG00000144504|Q9P2S6-2|ANKMY1	MULTI-SECPEP	A375_MHC_IP_R1	1	569.2371826171875	2	568.837331	1135.66011	-0.48483	-0.00027579	0.25532	0.00014524	-0.22951	-0.00013055	568.8374198820512	46.815	0.61216	46.815	46.495	47.107	0					26	11	3	0	0	0	0.4264	1	16411	16411		49.933	2.1843	1	13985000			34141	5490	24959	25132	33221	33221					0.09770560574247611
LSTLTPLHIAA	11	Unmodified	_LSTLTPLHIAA_					0	0	0		nc|ENSG00000144504|Q9P2S6-2|ANKMY1;ENSG00000144504|ENST00000401804|ANKMY1;nc|ENSG00000144504|Q9P2S6-4|ANKMY1;nc|ENSG00000144504|Q9P2S6|ANKMY1	nc|ENSG00000144504|Q9P2S6-2|ANKMY1	nc|ENSG00000144504|Q9P2S6-2|ANKMY1	MULTI-SECPEP	A375_MHC_IP_R2	2	569.236572265625	2	568.837331	1135.66011	-0.31474	-0.00017903	-0.152	-8.6462E-05	-0.46673	-0.0002655	568.837167616084	45.857	0.65429	46.622	46.303	46.957	0.76518					29	12	3	0	0	0	0.4264	1	17125	17125		49.933	9.9833	1	13199000			34142	5490	24959	25132	33222	33222					0.09770560574247611
LSTMKDQDLSY	11	Unmodified	_LSTMKDQDLSY_					0	0	0			REV__ENSG00000187612|ENST00000344514|OR5W2	REV__ENSG00000187612|ENST00000344514|OR5W2	MULTI-SECPEP	A375_MHC_IP_R2	2	651.2073364257812	2	650.80811	1299.60167	-0.78328	-0.00050976	-0.17572	-0.00011436	-0.959	-0.00062412	650.808118639657	39.913	0.60998	40.687	40.32	40.93	0.77451					15	11	2	0	0	0	0.99955	1	14844	14844		0.26902	0.26902	1	2409000	+		34143	22034	24960	25133	33223	33223					-0.03614908853205634
LSTNIGYKKL	10	Unmodified	_LSTNIGYKKL_					0	0	0			REV__tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1	REV__tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	379.9169921875	3	379.560646	1135.66011	0.086828	3.2957E-05	0.03992	1.5152E-05	0.12675	4.8109E-05	379.5606259582974	45.863	1.2647	46.628	46.252	47.517	0.76519					71	24	5	0	0	0	0.7154	1	17345	17345		5.4027	0.68679	1	106680000	+		34144	28637	24961	25134	33224	33224					0.09770560574247611
LSTPAAACTEP	11	Unmodified	_LSTPAAACTEP_					0	0	0		ENSG00000038532|ENST00000409790|CLEC16A;nc|ENSG00000038532|Q2KHT3-3|CLEC16A;ENST00000261657.5_1_16:11260358-11272544:+|nuORF	ENSG00000038532|ENST00000409790|CLEC16A	ENSG00000038532|ENST00000409790|CLEC16A	MULTI-MSMS	A375_MHC_IP_R2	2	531.1748046875	2	530.752607	1059.49066	-1.0499	-0.00055725	1.2301	0.0006529	0.18023	9.5656E-05	530.7527285198983	37.375	0.35833	38.146	37.968	38.327	0.7709					11	6	2	0	0	0	0.56199	1	13720	13720		26.268	2.2476	1	1762600			34145	1155	24962	25135	33225	33225					-0.0367050377067244
LSTPFVIRT	9	Unmodified	_LSTPFVIRT_					0	0	0		ENSG00000152402|ENST00000526355|GUCY1A2;nc|ENSG00000152402|P33402-3|GUCY1A2;nc|ENSG00000152402|P33402-2|GUCY1A2	ENSG00000152402|ENST00000526355|GUCY1A2	ENSG00000152402|ENST00000526355|GUCY1A2	MULTI-SECPEP	A375_MHC_IP_R1	1	517.7052612304688	2	517.305667	1032.59678	-0.51003	-0.00026384	-0.082557	-4.2707E-05	-0.59259	-0.00030655	517.3055934751206	47.391	1.9279	47.391	47.055	48.983	0					69	37	5	0	0	0	0.13208	1	16630	16630		41.956	0	1	60375000			34146	5962	24963	25136	33226	33226					0.08178619856994374
LSTPLIRTF	9	Unmodified	_LSTPLIRTF_					0	0	0		ENSG00000180008|ENST00000555846|SOCS4	ENSG00000180008|ENST00000555846|SOCS4	ENSG00000180008|ENST00000555846|SOCS4	MULTI-SECPEP	A375_MHC_IP_R2	2	524.1607666015625	2	524.313492	1046.61243	-0.61942	-0.00032477	-0.40774	-0.00021378	-1.0272	-0.00053855	524.3132375257672	72.623	1.4741	73.358	72.922	74.396	0.73541					61	26	4	0	0	0	0.087712	1	27542	27542		66.457	8.9853	1	82204000			34147	8271	24964	25137	33227	33227					0.09098906374038052
LSTPLPSLAP	10	Unmodified	_LSTPLPSLAP_					0	0	0			REV__ENST00000435366.2_2_20:33865391-33865571:-|nuORF	REV__ENST00000435366.2_2_20:33865391-33865571:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	498.69183349609375	2	498.292225	994.569897	-0.32193	-0.00016042	0.26831	0.0001337	-0.053624	-2.672E-05	498.29195085278656	77.817	0.51134	77.817	77.588	78.099	0					19	9	3	0	0	0	0.30274	1	28405	28405		39.957	0.0076237	1	1763700	+		34148	24749	24965	25138	33228	33228					0.07239511245802532
LSTPYIHSL	9	Unmodified	_LSTPYIHSL_					0	0	0		ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	MULTI-MSMS	A375_MHC_IP_R1	1	516.1914672851562	2	515.782025	1029.5495	-0.94504	-0.00048743	-0.76191	-0.00039298	-1.7069	-0.00088041	516.2827597940039	68.157	0.35583	68.157	67.955	68.31	0					11	6	2	0	0	0	0.14922	1	24704	24704		41.84	7.7372	1	891040			34149	965	24966	25139	33229	33229					0.035903405860153725
LSTQCFCFL	9	Unmodified	_LSTQCFCFL_					0	0	0			REV__ENST00000296028.3_1_4:74852930-74853077:-|nuORF	REV__ENST00000296028.3_1_4:74852930-74853077:-|nuORF	MSMS	A375_MHC_IP_R1	1	531.2007446289062	2	531.243363	1060.47217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.49	1	132.49	131.99	132.99	0								0	0	0	0.15486	1	51085	51085		13.508	1.8676	1		+		34150	23384	24967	25140	33230	33230					-0.055643369462131886
LSTQGDYIN	9	Unmodified	_LSTQGDYIN_					0	0	0		nc|ENSG00000117280|O14966-3|RAB29;nc|ENSG00000117280|O14966-2|RAB29;ENSG00000117280|ENST00000367139|RAB29;ENST00000468887.1_1_1:205739472-205744529:-|nuORF	nc|ENSG00000117280|O14966-3|RAB29	nc|ENSG00000117280|O14966-3|RAB29	MSMS	A375_MHC_IP_R1	1	505.66290283203125	2	505.743096	1009.47164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.73	1	92.73	92.23	93.23	0								0	0	0	0.1521	1	34082	34082		18.146	0.011366	1				34151	3469	24968	25141	33231	33231					-0.032717170700493625
LSTQPISSLDW	11	Unmodified	_LSTQPISSLDW_					0	0	0		ENSG00000243667|ENST00000295121|DNAAF10;ENST00000492039.6_1_2:68352461-68384592:-|nuORF	ENSG00000243667|ENST00000295121|DNAAF10	ENSG00000243667|ENST00000295121|DNAAF10	MULTI-MSMS	A375_MHC_IP_R2	2	416.61492919921875	3	416.215316	1245.62412	-0.38934	-0.00016205	0.0091025	3.7886E-06	-0.38024	-0.00015826	416.2152131159672	38.574	0.61007	39.349	39.098	39.708	0.77451					29	11	4	0	0	0	0.72585	1	14207	14207		12.856	1.7907	1	7673900			34152	9811	24969	25142	33232	33232					0.011130586067110926
LSTQPNQLFSY	11	Unmodified	_LSTQPNQLFSY_					0	0	0			REV__ENSG00000136487|ENST00000423893|GH2	REV__ENSG00000136487|ENST00000423893|GH2	MSMS	A375_MHC_IP_R1	1	433.2850646972656	3	433.218949	1296.63502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.76	1	133.76	133.26	134.26	0								0	0	0	0.16302	1	51585	51585		1.2148	0	1		+		34153	18940	24970	25143	33233	33233					-0.0014353901899539778
LSTQRGSLHVF	11	Unmodified	_LSTQRGSLHVF_					0	0	0		ENSG00000157796|ENST00000399820|WDR19;nc|ENSG00000157796|Q8NEZ3-2|WDR19	ENSG00000157796|ENST00000399820|WDR19	ENSG00000157796|ENST00000399820|WDR19	MULTI-SECPEP	A375_MHC_IP_R1	1	414.95562744140625	3	415.56305	1243.66732	0.21332	8.865E-05	0.1364	5.6682E-05	0.34972	0.00014533	415.5630271978456	27.508	0.25285	27.508	27.331	27.584	0					5	4	2	0	0	0	0.99018	1	8361	8361		6.2344	3.6031	1	1007900			34154	6266	24971	25144	33234	33234					0.055232931746331815
LSTRDASIL	9	Unmodified	_LSTRDASIL_					0	0	0		ENSG00000166342|ENST00000327305|NETO1;nc|ENSG00000166342|Q8TDF5-2|NETO1	ENSG00000166342|ENST00000327305|NETO1	ENSG00000166342|ENST00000327305|NETO1	MULTI-MSMS	A375_MHC_IP_R1	1	488.6770935058594	2	488.277106	974.53966	-0.4733	-0.0002311	0.39307	0.00019193	-0.080228	-3.9173E-05	488.27723521820883	39.905	0.30565	39.905	39.744	40.05	0					10	5	2	0	0	0	0.22013	1	13723	13723		36.506	5.2379	1	2520800			34155	7062	24972	25145	33235	33235					0.051371525806075624
LSTRDASIL	9	Unmodified	_LSTRDASIL_					0	0	0		ENSG00000166342|ENST00000327305|NETO1;nc|ENSG00000166342|Q8TDF5-2|NETO1	ENSG00000166342|ENST00000327305|NETO1	ENSG00000166342|ENST00000327305|NETO1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	488.277106	974.53966	-0.75568	-0.00036898	-0.070196	-3.4275E-05	-0.82587	-0.00040325	488.27700896744375	39.114	0.3585	39.888	39.658	40.016	0.77451	-0.0082237	-0.00020136	NaN	36.506	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2763600			34156	7062	24972	25145							0.051371525806075624
LSTRRPAL	8	Unmodified	_LSTRRPAL_					0	0	0			REV__CNTN6|p.G808R|1|0.4|ENSG00000134115|chr3:1383313-1383313|G/A|missense_variant	REV__CNTN6|p.G808R|1|0.4|ENSG00000134115|chr3:1383313-1383313|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	457.68218994140625	2	457.282526	912.550499	-0.027269	-1.247E-05	-0.25561	-0.00011689	-0.28288	-0.00012936	457.28223590586754	44.276	0.25574	44.276	44.165	44.42	0					6	4	2	0	0	0	0.95423	1	15481	15481		7.9102	2.6795	1	1311800	+		34157	15817	24973	25146	33236	33236					0.09072599745559273
LSTSFHTQY	9	Unmodified	_LSTSFHTQY_					0	0	0			REV__ENST00000330149.9_1_14:39639441-39639498:-|nuORF	REV__ENST00000330149.9_1_14:39639441-39639498:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	543.2109375	2	542.258914	1082.50327	-1.1845	-0.00064228	0.22401	0.00012147	-0.96045	-0.00052081	542.2591355739902	59.899	0.75797	60.646	60.148	60.906	0.74714					27	14	3	0	0	0	0.63811	1	22541	22541		12.532	0.89125	1	3627200	+		34158	23616	24974	25147	33237	33237					-0.03467724316078602
LSTSIWGSL	9	Unmodified	_LSTSIWGSL_					0	0	0			REV__ENST00000392627.5_1_17:72427082-72427565:+|nuORF	REV__ENST00000392627.5_1_17:72427082-72427565:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	482.6612243652344	2	482.260925	962.507297	-0.39475	-0.00019037	-0.096045	-4.6319E-05	-0.49079	-0.00023669	482.2608878656515	100.52	0.56361	101.28	101.03	101.6	0.76278					18	10	2	0	0	0	0.25276	1	38114	38114		34.102	1.3168	1	1948400	+		34159	24275	24975	25148	33238	33238					0.02454365177618456
LSTSIWGSL	9	Unmodified	_LSTSIWGSL_					0	0	0			REV__ENST00000392627.5_1_17:72427082-72427565:+|nuORF	REV__ENST00000392627.5_1_17:72427082-72427565:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	481.69073486328125	2	482.260925	962.507297	-0.39475	-0.00019037	-0.096045	-4.6319E-05	-0.49079	-0.00023669	482.2608878656515	100.52	0.56361	101.28	101.03	101.6	0.76278					18	10	2	0	0	0	0.47368	1	38099	38099		26.884	0	1	1948400	+		34160	24275	24975	25148	33239	33239					0.02454365177618456
LSTSKFPQLL	10	Unmodified	_LSTSKFPQLL_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-SECPEP	A375_MHC_IP_R2	2	567.7001953125	2	567.331882	1132.64921	-0.19726	-0.00011191	-0.55118	-0.0003127	-0.74844	-0.00042461	567.3313322626154	111.34	0.30914	112.08	111.9	112.21	0.73692					9	5	2	0	0	0	0.77698	1	41960	41960		22.658	7.4096	1	1664100	+		34161	27230	24976	25149	33240	33240					0.0881915819995811
LSTTIQEELY	10	Unmodified	_LSTTIQEELY_					0	0	0		MCM6|p.F83L|1|0.22|ENSG00000076003|chr2:135872704-135872704|A/G|missense_variant	MCM6|p.F83L|1|0.22|ENSG00000076003|chr2:135872704-135872704|A/G|missense_variant	MCM6|p.F83L|1|0.22|ENSG00000076003|chr2:135872704-135872704|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	598.2031860351562	2	598.805894	1195.59723	-0.75549	-0.00045239	0.98003	0.00058685	0.22453	0.00013445	598.8067278320073	50.075	0.71232	50.829	50.548	51.26	0.75406					15	13	2	0	0	0	0.83355	1	18716	18716		22.736	4.5899	1	2082100			34162	14360	24977	25150	33241	33241					0.0072594999553530215
LSTTNQLI	8	Unmodified	_LSTTNQLI_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	A375_MHC_IP_R1	1	445.6531677246094	2	445.2531	888.491647	-0.16539	-7.3639E-05	0.27219	0.00012119	0.1068	4.7554E-05	445.2530539647468	47.133	0.4125	47.133	46.85	47.263	0					12	7	3	0	0	0	0.75801	1	16600	16600		18.146	0	1	2017000	+		34163	18137	24978	25151	33242	33242					0.04294078660575451
LSTTNQLI	8	Unmodified	_LSTTNQLI_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	A375_MHC_IP_R2	2	445.653076171875	2	445.2531	888.491647	-0.3153	-0.00014039	0.35042	0.00015602	0.03512	1.5637E-05	445.25314926827593	46.139	0.65611	46.904	46.503	47.159	0.76519					13	12	2	0	0	0	0.92867	1	17313	17313		13.042	0	1	1888300	+		34164	18137	24978	25151	33243	33243					0.04294078660575451
LSTTNQLI	8	Unmodified	_LSTTNQLI_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	445.2531	888.491647	-0.16539	-7.3639E-05	0.27219	0.00012119	0.1068	4.7554E-05	445.2530539647468	47.133	0.4125	47.133	46.85	47.263	0	0.11439	-2.4783E-05	NaN	18.146	12	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2017000	+		34165	18137	24978	25151							0.04294078660575451
LSTTQQEK	8	Unmodified	_LSTTQQEK_					0	0	0		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MSMS	A375_MHC_IP_R1	1	467.6847839355469	2	467.745639	933.476725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.862	1	30.862	30.362	31.362	0								0	0	0	0.16876	1	9847	9847		18.135	1.1927	1				34166	6487	24979	25152	33244	33244					0.007325867925715102
LSTVRPGT	8	Unmodified	_LSTVRPGT_					0	0	0		nc|ENSG00000150967|Q9NP78-3|ABCB9;ENST00000538895.5_1_12:123424612-123444782:-|nuORF;nc|ENSG00000150967|Q9NP78-6|ABCB9;nc|ENSG00000150967|Q9NP78-5|ABCB9;nc|ENSG00000150967|Q9NP78-7|ABCB9;nc|ENSG00000150967|Q9NP78-2|ABCB9;ENSG00000150967|ENST00000280560|ABCB9	nc|ENSG00000150967|Q9NP78-3|ABCB9	nc|ENSG00000150967|Q9NP78-3|ABCB9	MULTI-MSMS	A375_MHC_IP_R2	2	415.6067810058594	2	415.74016	829.465767	0.043434	1.8057E-05	0.069394	2.885E-05	0.11283	4.6907E-05	415.74012032190114	27.292	0.40734	27.971	27.843	28.251	0.67857					11	7	2	0	0	0	0.75389	1	9390	9390		19.257	0	1	1733600			34167	5871	24980	25153	33245	33245					0.044212292089468974
LSTVTLATV	9	Unmodified	_LSTVTLATV_					0	0	0		nc|ENSG859|P60507|ERVFC1	nc|ENSG859|P60507|ERVFC1	nc|ENSG859|P60507|ERVFC1	MULTI-MSMS	A375_MHC_IP_R1	1	453.1708984375	2	452.771126	903.527698	-0.18839	-8.5296E-05	0.23078	0.00010449	0.042399	1.9197E-05	452.771121564975	91.762	1.1132	91.762	91.299	92.413	0					39	21	3	0	0	0	0.012712	1	33650	33650		92.822	7.4654	1	4718500			34168	14974	24981	25154	33246	33246					0.07207535837437717
LSTVTVAWV	9	Unmodified	_LSTVTVAWV_					0	0	0			REV__TLR6|p.L598W|1|0.54|ENSG00000174130|chr4:38827681-38827681|A/C|missense_variant	REV__TLR6|p.L598W|1|0.54|ENSG00000174130|chr4:38827681-38827681|A/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	488.689208984375	2	488.279118	974.543683	-0.042499	-2.0752E-05	-0.54379	-0.00026552	-0.58629	-0.00028627	488.2786099893089	71.757	0.40259	71.757	71.615	72.018	0					12	7	2	0	0	0	0.35581	1	26055	26055		26.884	0	1	2618400	+		34169	28123	24982	25155	33247	33247					0.05539242074326012
LSTWAWISY	9	Unmodified	_LSTWAWISY_					0	0	0		ENST00000482392.1_1_2:232070951-232079819:+|nuORF	ENST00000482392.1_1_2:232070951-232079819:+|nuORF	ENST00000482392.1_1_2:232070951-232079819:+|nuORF	MSMS	A375_MHC_IP_R1	1	563.700439453125	2	563.782025	1125.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.935	1	59.935	59.435	60.435	0								0	0	0	0.15283	1	21570	21570		16.942	0	1				34170	12523	24983	25156	33248	33248					-0.008256594139993467
LSTYRLLHS	9	Unmodified	_LSTYRLLHS_					0	0	0		ENSG00000197272|ENST00000356897|IL27	ENSG00000197272|ENST00000356897|IL27	ENSG00000197272|ENST00000356897|IL27	MULTI-MSMS	A375_MHC_IP_R2	2	363.9169616699219	3	363.873224	1088.59784	-0.069721	-2.537E-05	0.53766	0.00019564	0.46794	0.00017027	363.8733510112613	31.588	0.56057	32.325	32.044	32.605	0.73692					15	10	2	0	0	0	0.57432	1	11158	11158		16.149	2.6304	1	1911000			34171	9138	24984	25157	33249	33249					0.057088342259021374
LSVAHSFNLF	10	Unmodified	_LSVAHSFNLF_					0	0	0			REV__ENSG00000179542|ENST00000356928|SLITRK4	REV__ENSG00000179542|ENST00000356928|SLITRK4	MULTI-SECPEP	A375_MHC_IP_R2	2	568.201171875	2	567.800749	1133.58694	-0.25315	-0.00014374	-0.28061	-0.00015933	-0.53377	-0.00030307	567.8010321590295	68.66	0.60674	69.395	69.07	69.677	0.73512					24	11	4	0	0	0	0.64716	1	26017	26017		29.082	2.1979	1	1612900	+		34172	21569	24985	25158	33250	33250					0.025494318515939085
LSVAIIPLE	9	Unmodified	_LSVAIIPLE_					0	0	0		tr|U7SSC2|U7SSC2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01681PE=4SV=1	tr|U7SSC2|U7SSC2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01681PE=4SV=1	tr|U7SSC2|U7SSC2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01681PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	478.35919189453125	2	477.797143	953.579734	-0.51831	-0.00024765	-0.0059129	-2.8252E-06	-0.52423	-0.00025047	477.79705592084275	131.68	0.40384	131.87	131.75	132.15	0.18953					13	7	3	0	0	0	0.72985	1	51763	51763		4.3292	0	1	42127000			34173	29627	24986	25159	33251	33251					0.10108699251168218
LSVALPYFW	9	Unmodified	_LSVALPYFW_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-SECPEP	A375_MHC_IP_R2	2	365.616943359375	3	365.867299	1094.58007	0.15155	5.5448E-05	-0.54501	-0.0001994	-0.39345	-0.00014395	365.8671120268918	48.175	0.55285	48.934	48.731	49.284	0.75905					17	10	3	0	0	0	0.71541	1	18145	18145		11.495	0	1	2635600			34174	9882	24987	25160	33252	33252					0.03656118971025535
LSVAPSKAREY	11	Unmodified	_LSVAPSKAREY_					0	0	0		ENSG00000174917|ENST00000309324|MICOS13	ENSG00000174917|ENST00000309324|MICOS13	ENSG00000174917|ENST00000309324|MICOS13	MULTI-MSMS	A375_MHC_IP_R1	1	407.959228515625	3	407.559305	1219.65609	-0.48743	-0.00019866	0.40411	0.0001647	-0.08332	-3.3958E-05	407.55943446316155	25.942	0.60741	25.942	25.714	26.322	0					19	11	2	0	0	0	0.082464	1	7660	7660		54.259	30.295	1	21710000			34175	7913	24988	25161	33253	33253					0.05504471080530493
LSVAPSKAREY	11	Unmodified	_LSVAPSKAREY_					0	0	0		ENSG00000174917|ENST00000309324|MICOS13	ENSG00000174917|ENST00000309324|MICOS13	ENSG00000174917|ENST00000309324|MICOS13	MULTI-MSMS	A375_MHC_IP_R1	1	611.235107421875	2	610.83532	1219.65609	-0.60072	-0.00036694	0.15921	9.7249E-05	-0.44151	-0.00026969	610.8353168001438	25.964	0.35417	25.964	25.816	26.17	0					15	6	3	0	0	0	0.43294	1	7687	7687		36.395	18.952	1	4415500			34176	7913	24988	25161	33254	33254					0.05504471080530493
LSVAPSKAREY	11	Unmodified	_LSVAPSKAREY_					0	0	0		ENSG00000174917|ENST00000309324|MICOS13	ENSG00000174917|ENST00000309324|MICOS13	ENSG00000174917|ENST00000309324|MICOS13	MULTI-MSMS	A375_MHC_IP_R2	2	407.9590148925781	3	407.559305	1219.65609	-0.42396	-0.00017279	-0.19038	-7.759E-05	-0.61434	-0.00025038	407.55925450684924	25.255	0.7136	25.898	25.719	26.433	0.64368					22	13	2	0	0	0	0.1293	1	8420	8420		47.724	24.709	1	21299000			34177	7913	24988	25161	33255	33255					0.05504471080530493
LSVAPSKAREY	11	Unmodified	_LSVAPSKAREY_					0	0	0		ENSG00000174917|ENST00000309324|MICOS13	ENSG00000174917|ENST00000309324|MICOS13	ENSG00000174917|ENST00000309324|MICOS13	MULTI-MSMS	A375_MHC_IP_R2	2	611.2347412109375	2	610.83532	1219.65609	-0.93182	-0.00056919	0.007069	4.318E-06	-0.92476	-0.00056487	610.8352308548466	25.234	0.50958	25.877	25.719	26.229	0.64368					16	9	2	0	0	0	0.43294	1	8453	8453		36.395	18.952	1	3390700			34178	7913	24988	25161	33256	33256					0.05504471080530493
LSVATDWVGL	10	Unmodified	_LSVATDWVGL_					0	0	0			REV__ENSG00000244617|ENST00000320256|ASPRV1	REV__ENSG00000244617|ENST00000320256|ASPRV1	MULTI-SECPEP	A375_MHC_IP_R2	2	531.187255859375	2	530.787307	1059.56006	-0.66982	-0.00035553	0.25995	0.00013798	-0.40987	-0.00021755	530.78752714896	74.435	0.55977	75.172	74.907	75.467	0.73752					14	10	2	0	0	0	0.42954	1	28308	28308		49.933	9.9833	1	1075600	+		34179	22825	24989	25162	33257	33257					0.03266323240427482
LSVAWSIIV	9	Unmodified	_LSVAWSIIV_					0	0	0			REV__OR4K5|p.M146I|1|0.76|ENSG00000176281|chr14:19921044-19921044|G/A|missense_variant	REV__OR4K5|p.M146I|1|0.76|ENSG00000176281|chr14:19921044-19921044|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	493.7052307128906	2	494.29731	986.580068	-0.3909	-0.00019322	0.68782	0.00033999	0.29692	0.00014677	494.2975548017421	95.932	0.70917	95.932	95.565	96.274	0					22	13	3	0	0	0	0.43707	1	35159	35159		15.847	0	1	1337600	+		34180	27672	24990	25163	33258	33258					0.08624118971044936
LSVCHRCV	8	Unmodified	_LSVCHRCV_					0	0	0			REV__ENST00000558780.5_2_14:24651254-24657791:-|nuORF	REV__ENST00000558780.5_2_14:24651254-24657791:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	458.66650390625	2	458.728215	915.441877	-0.52149	-0.00023922	-4.1531	-0.0019052	-4.6746	-0.0021444	458.72569506894206	37.862	0.25642	38.636	38.483	38.739	0.77451					6	4	2	0	0	0	0.75805	1	13832	13832		18.135	0	1	965560	+		34181	26140	24991	25164	33259	33259					-0.019226508207339066
LSVCPGIAGAI	11	Unmodified	_LSVCPGIAGAI_					0	0	0			REV__SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	REV__SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	500.694580078125	2	500.778428	999.542302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.776	1	64.516	64.016	65.016	0.74022								0	0	0	0.15377	1	24184	24184		18.146	4.6385	1		+		34182	17157	24992	25165	33260	33260					0.04251284713905079
LSVELKHY	8	Unmodified	_LSVELKHY_					0	0	0		nc|ENSG00000048028|Q96RU2-2|USP28;USP28|p.V940Gfs*26|1|0.33|ENSG00000048028|chr11:113803201-113803202|-/C|frameshift_variant;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28;ENST00000540438.5_1_11:113669964-113691034:-|nuORF	nc|ENSG00000048028|Q96RU2-2|USP28	nc|ENSG00000048028|Q96RU2-2|USP28	MULTI-SECPEP	A375_MHC_IP_R1	1	495.1659851074219	2	494.776742	987.538931	-0.48178	-0.00023837	-0.43586	-0.00021565	-0.91763	-0.00045402	494.7764397219565	36.277	0.45732	36.277	36.084	36.541	0					13	8	2	0	0	0	0.86263	1	12152	12152		34.102	0	1	1818400			34183	14463	24993	25166	33261	33261					0.0446635793156247
LSVELVCGEF	10	Unmodified	_LSVELVCGEF_					0	0	0			REV__ENST00000443616.1_1_1:119669641-119669854:-|nuORF	REV__ENST00000443616.1_1_1:119669641-119669854:-|nuORF	MSMS	A375_MHC_IP_R2	2	548.1992797851562	2	548.273175	1094.5318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.095	1	61.84	61.34	62.34	0.74503								0	0	0	0.14862	1	23149	23149		20.454	1.1966	1		+		34184	24827	24994	25167	33262	33262					-0.011687427311699139
LSVEPLHLG	9	Unmodified	_LSVEPLHLG_					0	0	0			REV__nc|ENSG00000177602|Q8TF76-2|HASPIN	REV__nc|ENSG00000177602|Q8TF76-2|HASPIN	MULTI-SECPEP	A375_MHC_IP_R2	2	483.1762390136719	2	482.776742	963.538931	-0.64252	-0.0003102	0.27434	0.00013245	-0.36818	-0.00017775	482.7766999260886	74.826	0.70913	75.563	75.163	75.872	0.73751					22	13	2	0	0	0	0.40041	1	28410	28410		38.151	0	1	1524400	+		34185	21464	24995	25168	33263	33263					0.05570357931571834
LSVEPTDQGCY	11	Unmodified	_LSVEPTDQGCY_					0	0	0		ENSG00000162458|ENST00000375766|FBLIM1;ENST00000509138.1_1_1:16103614-16111153:+|nuORF;ENST00000514156.1_1_1:16103511-16111153:+|nuORF;nc|ENSG00000162458|Q8WUP2-3|FBLIM1	ENSG00000162458|ENST00000375766|FBLIM1	ENSG00000162458|ENST00000375766|FBLIM1	MSMS	A375_MHC_IP_R2	2	606.2073364257812	2	606.266078	1210.5176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.15	1	112.87	112.37	113.37	0.72458								0	0	0	0.16179	1	42282	42282		9.3831	0	1				34186	6537	24996	25169	33264	33264					-0.07923439950127431
LSVFRGRV	8	Unmodified	_LSVFRGRV_					0	0	0			REV__ENST00000409820.2_1_2:191110936-191115119:-|nuORF	REV__ENST00000409820.2_1_2:191110936-191115119:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	467.6475830078125	2	467.285069	932.555585	-0.84026	-0.00039264	0.20462	9.5618E-05	-0.63564	-0.00029702	467.285062157774	30.032	0.71091	30.737	30.492	31.203	0.70547					24	13	2	0	0	0	0.77624	1	10576	10576		8.5933	0	1	4314900	+		34187	24475	24997	25170	33265	33265					0.08660903608188164
LSVGAKGR	8	Unmodified	_LSVGAKGR_					0	0	0			REV__ENST00000367627.7_1_1:179050729-179050927:+|nuORF	REV__ENST00000367627.7_1_1:179050729-179050927:+|nuORF	MSMS	A375_MHC_IP_R2	2	394.2340087890625	2	394.24287	786.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.247	1	61.992	61.492	62.492	0.74503								0	0	0	0.16876	1	23209	23209		5.2307	0	1		+		34188	23976	24998	25171	33266	33266					0.0694095279142175
LSVGDKVVP	9	Unmodified	_LSVGDKVVP_					0	0	0			REV__ENST00000453289.1_1_2:27580061-27580693:+|nuORF	REV__ENST00000453289.1_1_2:27580061-27580693:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	457.6709899902344	2	457.271293	912.528032	-0.28219	-0.00012904	-0.22304	-0.00010199	-0.50523	-0.00023103	457.2711936734174	41.858	0.66372	42.633	42.249	42.913	0.77451					19	12	2	0	0	0	0.39388	1	15557	15557		32.305	4.6767	1	4120700	+		34189	24907	24999	25172	33267	33267					0.06826955557289693
LSVGFQQNP	9	Unmodified	_LSVGFQQNP_					0	0	0			REV__ENSG00000175220|ENST00000311956|ARHGAP1	REV__ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	495.18218994140625	2	495.256174	988.497795	-0.4023	-0.00019924	0.43859	0.00021721	0.03629	1.7973E-05	495.2563204468953	60.948	0.25352	60.948	60.77	61.024	0					7	4	2	0	0	0	0.63327	1	21924	21924		13.042	0	1	1481300	+		34190	21332	25000	25173	33268	33268					0.0030859689209137287
LSVGISQYH	9	Unmodified	_LSVGISQYH_					0	0	0			REV__ENST00000314471.10_1_19:39842996-39844702:+|nuORF	REV__ENST00000314471.10_1_19:39842996-39844702:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	502.21331787109375	2	502.263999	1002.51345	0.10871	5.4599E-05	0.29751	0.00014943	0.40622	0.00020403	502.26437964764057	49.012	1.216	49.012	48.577	49.793	0					33	23	3	0	0	0	0.61998	1	17563	17563		13.906	0.39817	1	4638500	+		34191	23524	25001	25174	33269	33269					0.012288834091350509
LSVGLSFL	8	Unmodified	_LSVGLSFL_					0	0	0		ENSG00000006638|ENST00000375190|TBXA2R;nc|ENSG00000006638|P21731-2|TBXA2R	ENSG00000006638|ENST00000375190|TBXA2R	ENSG00000006638|ENST00000375190|TBXA2R	MULTI-SECPEP	A375_MHC_IP_R2	2	418.6498107910156	2	418.249829	834.485105	-0.0079534	-3.3265E-06	0.20435	8.547E-05	0.1964	8.2144E-05	418.249784402058	64.545	0.50942	65.285	65.054	65.564	0.74022					23	9	3	0	0	0	0.27673	1	24462	24462		63.563	0	1	3651700			34192	923	25002	25175	33270	33270					0.06124185499857049
LSVGPLSTHSP	11	Unmodified	_LSVGPLSTHSP_					0	0	0			REV__ENST00000274853.7_1_6:30654106-30654274:-|nuORF	REV__ENST00000274853.7_1_6:30654106-30654274:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	548.1951904296875	2	547.795663	1093.57677	-0.54858	-0.00030051	-0.27088	-0.00014839	-0.81946	-0.0004489	547.7954835795942	25.26	0.45854	25.26	25.154	25.613	0					14	8	2	0	0	0	0.84606	1	7395	7395		21.537	0	1	2858700	+		34193	23293	25003	25176	33271	33271					0.03372824126381602
LSVHVVGYGKY	11	Unmodified	_LSVHVVGYGKY_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	A375_MHC_IP_R2	2	408.2923278808594	3	407.892396	1220.65536	-0.072432	-2.9544E-05	-0.07384	-3.0119E-05	-0.14627	-5.9663E-05	407.8922290927057	48.805	0.96551	49.562	49.08	50.046	0.75737					35	18	2	0	0	0	0.72649	1	18266	18266		6.6235	0.3891	1	2568400			34194	1676	25004	25177	33272	33272					0.05385676431478714
LSVHYLWK	8	Unmodified	_LSVHYLWK_					0	0	0		ENSG00000232113|ENST00000417563|TEX50	ENSG00000232113|ENST00000417563|TEX50	ENSG00000232113|ENST00000417563|TEX50	MULTI-SECPEP	A375_MHC_IP_R1	1	523.6697998046875	2	523.295102	1044.57565	-0.47048	-0.0002462	-0.53791	-0.00028149	-1.0084	-0.00052769	523.2947120331571	59.928	0.40757	59.928	59.752	60.159	0					14	7	3	0	0	0	0.972	1	21628	21628		4.756	0	1	586950			34195	9727	25005	25178	33273	33273					0.05514654548119324
LSVIEWLFVGF	11	Unmodified	_LSVIEWLFVGF_					0	0	0			REV__TIE1|p.L1042F|1|0.43|ENSG00000066056|chr1:43321285-43321285|C/T|missense_variant	REV__TIE1|p.L1042F|1|0.43|ENSG00000066056|chr1:43321285-43321285|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	655.43017578125	2	655.363182	1308.71181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.819	1	86.555	86.055	87.055	0.73601								0	0	0	0.16249	1	32632	32632		5.7319	0.43497	1		+		34196	28108	25006	25179	33274	33274					0.06980304268131476
LSVKKKPPKKK	11	Unmodified	_LSVKKKPPKKK_					0	0	0			REV__RERE|p.S84Vfs*4|1|0.36|ENSG00000142599|chr1:8656049-8656050|-/T|frameshift_variant	REV__RERE|p.S84Vfs*4|1|0.36|ENSG00000142599|chr1:8656049-8656050|-/T|frameshift_variant	MSMS	A375_MHC_IP_R2	2	641.1053466796875	2	640.942465	1279.87038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.91	1	119.52	119.02	120.02	0.60909								0	0	0	0.16337	1	45220	45220		1.1933	0.735	1		+		34197	27882	25007	25180	33275	33275					0.2416364296707343
LSVKLKVKVKI	11	Unmodified	_LSVKLKVKVKI_					0	0	0		ENSG00000051341|ENST00000264233|POLQ;nc|ENSG00000051341|O75417-2|POLQ	ENSG00000051341|ENST00000264233|POLQ	ENSG00000051341|ENST00000264233|POLQ	MSMS	A375_MHC_IP_R2	2	627.8466796875	2	627.947216	1253.87988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.125	1	97.881	97.381	98.381	0.75586								0	0	0	0.16354	1	36865	36865		0.30703	0.03801	1				34198	1235	25008	25181	33276	33276					0.2630941125260051
LSVLARSAP	9	Unmodified	_LSVLARSAP_					0	0	0		ENST00000444563.5_1_1:43310314-43312030:-|nuORF;ENST00000425076.1_1_1:43309084-43312030:-|nuORF	ENST00000444563.5_1_1:43310314-43312030:-|nuORF	ENST00000444563.5_1_1:43310314-43312030:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	457.67694091796875	2	457.276909	912.539266	-0.34597	-0.0001582	0.28543	0.00013052	-0.060536	-2.7682E-05	457.2770708884559	40.104	0.40899	40.104	39.845	40.254	0					18	7	3	0	0	0	0.31606	1	13733	13733		47.749	5.6541	1	12421000			34199	11785	25009	25182	33277	33277					0.07949777651424483
LSVLARSAP	9	Unmodified	_LSVLARSAP_					0	0	0		ENST00000444563.5_1_1:43310314-43312030:-|nuORF;ENST00000425076.1_1_1:43309084-43312030:-|nuORF	ENST00000444563.5_1_1:43310314-43312030:-|nuORF	ENST00000444563.5_1_1:43310314-43312030:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	457.676513671875	2	457.276909	912.539266	-0.43011	-0.00019668	-0.41085	-0.00018787	-0.84096	-0.00038455	457.2767188682102	39.216	0.46	39.991	39.658	40.118	0.77451					19	8	3	0	0	0	0.083712	1	14460	14460		65.235	12.967	1	10314000			34200	11785	25009	25182	33278	33278					0.07949777651424483
LSVLGSVAW	9	Unmodified	_LSVLGSVAW_					0	0	0			REV__ENST00000489702.6_2_7:128588792-128589140:+|nuORF	REV__ENST00000489702.6_2_7:128588792-128589140:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	466.6658630371094	2	466.26601	930.517468	-0.24151	-0.00011261	-0.69008	-0.00032176	-0.93159	-0.00043437	466.26561399036336	55.34	0.40712	55.34	55.126	55.533	0					10	7	2	0	0	0	0.4867	1	19831	19831		20.454	0	1	1285400	+		34201	25375	25010	25183	33279	33279					0.04942972902847487
LSVLKEEW	8	Unmodified	_LSVLKEEW_					0	0	0			REV__ENST00000280527.6_1_2:36776140-36776209:+|nuORF	REV__ENST00000280527.6_1_2:36776140-36776209:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	501.6575927734375	2	502.276575	1002.5386	-0.33933	-0.00017044	-0.39236	-0.00019707	-0.73168	-0.00036751	502.2762431953917	73.101	0.30376	73.101	72.88	73.184	0					7	5	2	0	0	0	0.95424	1	26551	26551		13.906	2.2658	1	641130	+		34202	23314	25011	25184	33280	33280					0.0374293821170113
LSVLKLHH	8	Unmodified	_LSVLKLHH_					0	0	0		ENSG00000197019|ENST00000357949|SERTAD1	ENSG00000197019|ENST00000357949|SERTAD1	ENSG00000197019|ENST00000357949|SERTAD1	MULTI-SECPEP	A375_MHC_IP_R2	2	473.6934814453125	2	473.795269	945.575986	-0.37584	-0.00017807	0.23793	0.00011273	-0.13791	-6.5343E-05	473.7953549289674	100.54	0.61417	101.3	100.98	101.6	0.76278					20	11	2	0	0	0	0.972	1	38071	38071		7.9102	2.6795	1	5225200			34203	9104	25012	25185	33281	33281					0.10102074267967964
LSVLMLLKWVK	11	Unmodified	_LSVLMLLKWVK_					0	0	0			REV__tr|U7SJK9|U7SJK9_FUSNUPhosphonatetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02092PE=3SV=1	REV__tr|U7SJK9|U7SJK9_FUSNUPhosphonatetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02092PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	665.8187866210938	2	665.419977	1328.8254	-0.85961	-0.000572	-1.2662	-0.00084258	-2.1259	-0.0014146	665.4187836251815	136.64	0.40881	136.64	136.46	136.87	0					11	7	2	0	0	0	0.73795	1	52646	52646		1.3295	0	1	2525900	+		34204	28239	25013	25186	33282	33282					0.17414076109503185
LSVLYPIWYQ	10	Unmodified	_LSVLYPIWYQ_					0	0	0		MAS1|p.R141Q|2|0.27|ENSG00000130368|chr6:159907377-159907377|G/A|missense_variant	MAS1|p.R141Q|2|0.27|ENSG00000130368|chr6:159907377-159907377|G/A|missense_variant	MAS1|p.R141Q|2|0.27|ENSG00000130368|chr6:159907377-159907377|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	641.4973754882812	2	641.347532	1280.68051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.88	1	102.65	102.15	103.15	0.76428								0	0	0	0.15451	1	38615	38615		6.2058	0.47393	1				34205	14354	25014	25187	33283	33283					0.051397312340441204
LSVNELQKF	9	Unmodified	_LSVNELQKF_					0	0	0			REV__ENST00000596078.5_1_19:6741032-6743282:+|nuORF	REV__ENST00000596078.5_1_19:6741032-6743282:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	539.6861572265625	2	539.300581	1076.58661	-0.60711	-0.00032741	1.4565	0.00078549	0.8494	0.00045808	539.3004391440728	104.54	0.65723	104.54	104.29	104.94	0					13	7	3	0	0	0	0.52144	1	38307	38307		30.225	3.3412	1	985530	+		34206	26471	25015	25188	33284	33284					0.05138012131760661
LSVNFVDRDTY	11	Unmodified	_LSVNFVDRDTY_					0	0	0		ENSG00000187122|ENST00000266058|SLIT1	ENSG00000187122|ENST00000266058|SLIT1	ENSG00000187122|ENST00000266058|SLIT1	MULTI-SECPEP	A375_MHC_IP_R1	1	665.2271118164062	2	664.827692	1327.64083	-0.044885	-2.9841E-05	0.33484	0.00022261	0.28996	0.00019277	664.8276794676066	45.031	0.4562	45.031	44.878	45.334	0					18	8	3	0	0	0	0.99133	1	15757	15757		4.1895	0	1	2868700			34207	8807	25016	25189	33285	33285					-0.00988440507330779
LSVPKNEPGV	10	Unmodified	_LSVPKNEPGV_					0	0	0			REV__ENST00000517342.1_1_8:57389388-57389772:-|nuORF	REV__ENST00000517342.1_1_8:57389388-57389772:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	519.6096801757812	2	520.292756	1038.57096	-0.76217	-0.00039655	0.41145	0.00021408	-0.35072	-0.00018248	520.2930272283172	41.189	0.25287	41.189	41.013	41.266	0					6	4	2	0	0	0	0.92957	1	14220	14220		1.3295	0	1	1075200	+		34208	25668	25017	25190	33286	33286					0.053217256147036096
LSVPPPRA	8	Unmodified	_LSVPPPRA_					0	0	0			REV__ENST00000262366.7_1_16:4387729-4387855:+|nuORF	REV__ENST00000262366.7_1_16:4387729-4387855:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	419.1528625488281	2	418.75307	835.491587	0.094301	3.9489E-05	0.073012	3.0574E-05	0.16731	7.0063E-05	418.75299145005823	47.485	0.40758	48.247	47.97	48.378	0.76128					14	7	3	0	0	0	0.72008	1	17797	17797		28.487	1.6032	1	7273600	+		34209	23203	25018	25191	33287	33287					0.0672612345122161
LSVPPPVSQL	10	Unmodified	_LSVPPPVSQL_					0	0	0			REV__ENST00000372923.7_1_9:131017318-131017513:+|nuORF	REV__ENST00000372923.7_1_9:131017318-131017513:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	518.6764526367188	2	518.8055	1035.59645	-0.60751	-0.00031518	1.5844	0.000822	0.97689	0.00050682	519.3083593437005	69.545	0.45706	70.28	70.031	70.488	0.73421					13	8	2	0	0	0	0.64716	1	26353	26353		17.113	4.8722	1	1387800	+		34210	24078	25019	25192	33288	33288					0.08007200137149084
LSVQARQTI	9	Unmodified	_LSVQARQTI_					0	0	0			REV__ENST00000544888.5_1_12:7077022-7079603:-|nuORF	REV__ENST00000544888.5_1_12:7077022-7079603:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	508.663818359375	2	508.298373	1014.58219	-0.47752	-0.00024272	-1.5262	-0.00077578	-2.0038	-0.0010185	508.79774012972314	76.465	0.45387	76.465	76.168	76.622	0					9	8	2	0	0	0	0.47368	1	27908	27908		26.884	5.137	1	455670	+		34211	25991	25020	25193	33289	33289					0.07548547708859132
LSVQSPEAPE	10	Unmodified	_LSVQSPEAPE_					0	0	0			REV__ENST00000399627.3_1_22:50906187-50913269:-|nuORF	REV__ENST00000399627.3_1_22:50906187-50913269:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	529.1730346679688	2	528.764029	1055.5135	-0.57508	-0.00030408	-0.85093	-0.00044994	-1.426	-0.00075403	528.763432926056	31.128	0.50909	31.846	31.618	32.128	0.71857					15	9	2	0	0	0	0.62015	1	11037	11037		19.362	3.2128	1	4382600	+		34212	24395	25021	25194	33290	33290					-0.012031613815224773
LSVQWPWSYPV	11	Unmodified	_LSVQWPWSYPV_					0	0	0			REV__ENSG00000219073|ENST00000337107|CELA3B	REV__ENSG00000219073|ENST00000337107|CELA3B	MULTI-SECPEP	A375_MHC_IP_R1	1	681.48046875	2	681.348063	1360.68157	-0.56444	-0.00038458	0.973	0.00066295	0.40856	0.00027837	681.3485289797488	51.015	0.61033	51.015	50.814	51.424	0					17	11	3	0	0	0	0.99921	1	18155	18155		0	0	1	2203200	+		34213	19324	25022	25195	33291	33291					0.015659456029197827
LSVRKLQKI	9	Unmodified	_LSVRKLQKI_					0	0	0		nc|ENSG00000156671|Q96LT4-2|SAMD8;ENSG00000156671|ENST00000542569|SAMD8	nc|ENSG00000156671|Q96LT4-2|SAMD8	nc|ENSG00000156671|Q96LT4-2|SAMD8	MSMS	A375_MHC_IP_R1	1	362.29547119140625	3	362.244881	1083.71281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.072	1	30.072	29.572	30.572	0								0	0	0	0.15486	1	9507	9507		7.1017	0	1				34214	6203	25023	25196	33292	33292					0.1743056342768341
LSVRLEFDY	9	Unmodified	_LSVRLEFDY_					0	0	0		nc|ENSG00000138162|O95359-1|TACC2;nc|ENSG00000138162|O95359-5|TACC2;ENSG00000138162|ENST00000369005|TACC2;nc|ENSG00000138162|O95359-6|TACC2;nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-1|TACC2	nc|ENSG00000138162|O95359-1|TACC2	MULTI-SECPEP	A375_MHC_IP_R2	2	571.8780517578125	2	571.298039	1140.58152	-0.1313	-7.501E-05	-0.15456	-8.8299E-05	-0.28586	-0.00016331	571.2975854060704	86.277	0.71448	87.01	86.693	87.407	0.733					25	13	3	0	0	0	0.70759	1	32845	32845		21.537	3.1639	1	3200600			34215	4967	25024	25197	33293	33293					0.01685708269155839
LSVRNLQQI	9	Unmodified	_LSVRNLQQI_					0	0	0			REV__ENSG00000154920|ENST00000338165|EME1	REV__ENSG00000154920|ENST00000338165|EME1	MULTI-SECPEP	A375_MHC_IP_R1	1	536.2191772460938	2	535.819473	1069.62439	-0.69506	-0.00037243	0.13014	6.973E-05	-0.56493	-0.0003027	535.819509242353	50.739	0.40457	50.739	50.561	50.966	0					13	7	2	0	0	0	0.78719	1	18007	18007		2.7352	2.7352	1	2444200	+		34216	19906	25025	25198	33294	33294					0.09236523117237994
LSVRNLQQI	9	Unmodified	_LSVRNLQQI_					0	0	0			REV__ENSG00000154920|ENST00000338165|EME1	REV__ENSG00000154920|ENST00000338165|EME1	MULTI-MATCH	A375_MHC_IP_R2	2		2	535.819473	1069.62439	-1.094	-0.0005862	-0.049097	-2.6307E-05	-1.1431	-0.00061251	535.8194212801088	49.891	0.35907	50.645	50.394	50.753	0.75406	-0.046733	-8.8317E-05	NaN	2.7352	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2177800	+		34217	19906	25025	25198							0.09236523117237994
LSVRRGPP	8	Unmodified	_LSVRRGPP_					0	0	0		ENST00000517547.5_1_5:160838012-160973588:-|nuORF	ENST00000517547.5_1_5:160838012-160973588:-|nuORF	ENST00000517547.5_1_5:160838012-160973588:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	441.6763610839844	2	441.269419	880.524284	-0.51236	-0.00022609	-0.058922	-2.6E-05	-0.57129	-0.00025209	441.26932886904143	50.312	0.45639	51.066	50.804	51.26	0.75406					13	8	2	0	0	0	0.72008	1	18941	18941		28.487	0	1	1237500			34218	12962	25026	25199	33295	33295					0.07924330574087435
LSVSTSARKI	10	Unmodified	_LSVSTSARKI_					0	0	0			REV__ENST00000275767.3_1_7:134850078-134850300:+|nuORF	REV__ENST00000275767.3_1_7:134850078-134850300:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	530.6403198242188	2	531.319306	1060.62406	-0.60277	-0.00032027	3.1662	0.0016822	2.5634	0.001362	531.8222025936932	74.557	0.30462	74.557	74.349	74.653	0					7	5	2	0	0	0	0.91442	1	27171	27171		11.495	1.4208	1	796450	+		34219	23302	25027	25200	33296	33296					0.0961710339736328
LSVWIGGQL	9	Unmodified	_LSVWIGGQL_					0	0	0		nc|ENSG00000158296|Q8WWT9-3|SLC13A3;nc|ENSG00000158296|Q8WWT9-5|SLC13A3;nc|ENSG00000158296|Q8WWT9-6|SLC13A3;ENSG00000158296|ENST00000279027|SLC13A3;SLC13A3|p.S446L|1|0.09|ENSG00000158296|chr20:46566386-46566386|G/A|missense_variant	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	MULTI-SECPEP	A375_MHC_IP_R1	1	486.1454162597656	2	486.779285	971.544017	-0.32458	-0.000158	-0.15334	-7.4641E-05	-0.47792	-0.00023264	486.77915185006134	76.492	0.40413	76.492	76.319	76.724	0					11	7	2	0	0	0	0.52144	1	27847	27847		23.148	15.238	1	904670			34220	6300	25028	25201	33297	33297					0.057106617941940385
LSVYGKREPD	10	Unmodified	_LSVYGKREPD_					0	0	0			REV__SPTA1|p.G2329E|1|0.4|ENSG00000163554|chr1:158613724-158613724|C/T|missense_variant	REV__SPTA1|p.G2329E|1|0.4|ENSG00000163554|chr1:158613724-158613724|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	582.669677734375	2	582.306395	1162.59824	-0.34767	-0.00020245	0.83729	0.00048756	0.48962	0.00028511	582.3071449087794	47.029	0.56522	47.029	46.749	47.315	0					19	10	3	0	0	0	0.67512	1	16503	16503		15.248	1.3424	1	3145700	+		34221	28039	25029	25202	33298	33298					0.023442091550805344
LSVYGKREPD	10	Unmodified	_LSVYGKREPD_					0	0	0			REV__SPTA1|p.G2329E|1|0.4|ENSG00000163554|chr1:158613724-158613724|C/T|missense_variant	REV__SPTA1|p.G2329E|1|0.4|ENSG00000163554|chr1:158613724-158613724|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	582.306395	1162.59824	-0.28743	-0.00016737	0.88542	0.00051558	0.59799	0.00034821	582.3064436799237	46.218	0.50508	46.983	46.654	47.159	0.76519	-0.022839	3.5534E-05	NaN	15.248	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2634000	+		34222	28039	25029	25202							0.023442091550805344
LSVYMVWGQ	9	Unmodified	_LSVYMVWGQ_					0	0	0			REV__RGPD5-MALL|1|fusion	REV__RGPD5-MALL|1|fusion	MULTI-SECPEP	A375_MHC_IP_R2	2	541.13818359375	2	541.770603	1081.52665	-0.87975	-0.00047662	1.5905	0.00086167	0.71072	0.00038505	541.7714753516121	82.063	0.61081	82.805	82.482	83.093	0.74294					12	11	2	0	0	0	0.65246	1	31050	31050		10.824	0	1	1238200	+		34223	19411	25030	25203	33299	33299					-0.010850018031305808
LSVYVKALY	9	Unmodified	_LSVYVKALY_					0	0	0			REV__nc|ENSG00000165533|Q8TAM2-3|TTC8	REV__nc|ENSG00000165533|Q8TAM2-3|TTC8	MSMS	A375_MHC_IP_R1	1	528.4805908203125	2	528.310418	1054.60628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.958	1	77.958	77.458	78.458	0								0	0	0	0.15486	1	28453	28453		13.508	0.46542	1		+		34224	20594	25031	25204	33300	33300					0.08116388142502728
LSWEDSGLYQ	10	Unmodified	_LSWEDSGLYQ_					0	0	0		nc|ENSG00000162723|Q96A28-2|SLAMF9;chr1:159951866-159953309|258|12.04|0.18|6.04|-|ENST00000368092|SLAMF9,SLAMF9;ENSG00000162723|ENST00000368093|SLAMF9	nc|ENSG00000162723|Q96A28-2|SLAMF9	nc|ENSG00000162723|Q96A28-2|SLAMF9	MULTI-SECPEP	A375_MHC_IP_R2	2	599.6741333007812	2	599.274761	1196.53497	-0.54772	-0.00032824	0.47095	0.00028223	-0.076767	-4.6005E-05	599.2752331616232	62.717	0.70795	63.46	63.13	63.838	0.74263					21	13	2	0	0	0	0.72086	1	23829	23829		18.146	0	1	2387500			34225	392	25032	25205	33301	33301					-0.05543776352783425
LSWGIIVNY	9	Unmodified	_LSWGIIVNY_					0	0	0			REV__nc|ENSG00000072041|Q9H2J7-2|SLC6A15	REV__nc|ENSG00000072041|Q9H2J7-2|SLC6A15	MSMS	A375_MHC_IP_R2	2	355.5792541503906	3	355.530687	1063.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.921	1	31.639	31.139	32.139	0.71857								0	0	0	0.15486	1	10901	10901		7.609	0	1		+		34226	16593	25033	25206	33302	33302					0.04098930965665204
LSWGLIPFF	9	Unmodified	_LSWGLIPFF_					0	0	0			REV__ENST00000534843.1_1_12:12982539-12982698:+|nuORF	REV__ENST00000534843.1_1_12:12982539-12982698:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	360.6010437011719	3	360.535661	1078.58515	-0.65198	-0.00023506	-0.066623	-2.402E-05	-0.7186	-0.00025908	360.5356048215515	25.712	0.60905	26.372	26.044	26.653	0.65992					14	11	2	0	0	0	0.64808	1	8646	8646		7.609	2.2062	1	4004500	+		34227	25894	25034	25207	33303	33303					0.04900422833657103
LSWKNLKML	9	Unmodified	_LSWKNLKML_					0	0	0		ENST00000266079.4_1_20:62641597-62641636:+|nuORF	ENST00000266079.4_1_20:62641597-62641636:+|nuORF	ENST00000266079.4_1_20:62641597-62641636:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	378.8491516113281	3	378.223088	1131.64744	-0.17308	-6.5463E-05	4.293	0.0016237	4.12	0.0015583	378.226667268622	19.656	0.40637	20.266	19.942	20.349	0.61029					15	7	4	0	0	0	0.65527	1	5973	5973		12.241	4.6317	1	602230			34228	10353	25035	25208	33304	33304					0.08687825910351421
LSWLPFFIKEL	11	Unmodified	_LSWLPFFIKEL_					0	0	0		ENSG00000168830|ENST00000305344|HTR1E	ENSG00000168830|ENST00000305344|HTR1E	ENSG00000168830|ENST00000305344|HTR1E	MULTI-MSMS	A375_MHC_IP_R1	1	465.6695251464844	3	464.935713	1391.78531	-0.4759	-0.00022126	-0.1233	-5.7325E-05	-0.59919	-0.00027859	464.93552695202214	132.35	1.9309	132.35	131.83	133.76	0					78	37	4	0	0	0	0.7362	1	50831	50831		1.2148	0.20126	1	19793000			34229	7351	25036	25209	33305	33305					0.10508852710609062
LSWLVWLL	8	Unmodified	_LSWLVWLL_					0	0	0		ENSG00000158859|ENST00000367996|ADAMTS4;nc|ENSG00000158859|O75173-2|ADAMTS4	ENSG00000158859|ENST00000367996|ADAMTS4	ENSG00000158859|ENST00000367996|ADAMTS4	MULTI-SECPEP	A375_MHC_IP_R2	2	515.2122192382812	2	515.310221	1028.60589	-0.85408	-0.00044012	0.81857	0.00042182	-0.035509	-1.8298E-05	515.3107950590047	81.354	0.65616	82.097	81.826	82.482	0.74317					25	11	3	0	0	0	0.86765	1	31007	31007		4.3292	0	1	3517300			34230	6336	25037	25210	33306	33306					0.0927301321332834
LSWNLSLDR	9	Unmodified	_LSWNLSLDR_					0	0	0			REV__ADAD2|p.G484D|1|0.92|ENSG00000140955|chr16:84196295-84196295|G/A|missense_variant	REV__ADAD2|p.G484D|1|0.92|ENSG00000140955|chr16:84196295-84196295|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	551.703857421875	2	552.29583	1102.57711	-0.80911	-0.00044687	-0.92417	-0.00051041	-1.7333	-0.00095728	552.2954241572351	31.014	0.60505	31.733	31.216	31.821	0.71857					16	11	2	0	0	0	0.71341	1	10884	10884		13.042	0	1	2015300	+		34231	15308	25038	25211	33307	33307					0.029922438462335776
LSWNWSLSW	9	Unmodified	_LSWNWSLSW_					0	0	0			REV__ENST00000502900.2_1_X:148690480-148693128:-|nuORF	REV__ENST00000502900.2_1_X:148690480-148693128:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	590.1843872070312	2	589.785099	1177.55564	-0.47175	-0.00027823	-0.87576	-0.00051651	-1.3475	-0.00079474	589.7845635201862	69.393	0.55636	70.127	69.778	70.335	0.73421					25	10	3	0	0	0	0.28216	1	26273	26273		41.84	9.0539	1	4759900	+		34232	25509	25039	25212	33308	33308					-0.026031411824760653
LSWPHAEVPD	10	Unmodified	_LSWPHAEVPD_					0	0	0		ENST00000449997.1_1_7:44097442-44098349:+|nuORF	ENST00000449997.1_1_7:44097442-44098349:+|nuORF	ENST00000449997.1_1_7:44097442-44098349:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	576.7271728515625	2	575.780013	1149.54547	-0.069378	-3.9946E-05	-0.91963	-0.0005295	-0.989	-0.00056945	575.7795885534473	88.589	0.56036	88.589	88.358	88.919	0					20	10	3	0	0	0	0.69306	1	32487	32487		13.906	0.86358	1	3715000			34233	12063	25040	25213	33309	33309					-0.023317489077271603
LSWPRHCPL	9	Unmodified	_LSWPRHCPL_					0	0	0		ENST00000498830.5_1_20:62608707-62611232:-|nuORF	ENST00000498830.5_1_20:62608707-62611232:-|nuORF	ENST00000498830.5_1_20:62608707-62611232:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	554.2002563476562	2	554.789661	1107.56477	-0.95667	-0.00053075	3.0172	0.0016739	2.0605	0.0011431	554.7910291775539	40.761	0.40811	41.536	41.335	41.743	0.77451					10	7	2	0	0	0	0.72623	1	15041	15041		9.3831	9.3831	1	689130			34234	12769	25041	25214	33310	33310					0.015289289021893637
LSWRLFFFF	9	Unmodified	_LSWRLFFFF_					0	0	0			REV__ENST00000594780.1_1_19:6361708-6364854:+|nuORF	REV__ENST00000594780.1_1_19:6361708-6364854:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	422.6345520019531	3	421.56221	1261.6648	-0.22285	-9.3946E-05	4.1085	0.001732	3.8856	0.001638	421.5628764589389	36.852	0.60692	36.852	36.489	37.096	0					33	11	5	0	0	0	0.68216	1	12456	12456		5.2969	0	1	8713800	+		34235	26465	25042	25215	33311	33311					0.04443489507616505
LSWRRRQQLFS	11	Unmodified	_LSWRRRQQLFS_					0	0	0			REV__ENST00000372661.3_X:102611453-102612049:+|nuORF	REV__ENST00000372661.3_X:102611453-102612049:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	492.4509582519531	3	492.944265	1475.81096	-0.48331	-0.00023825	-1.0216	-0.00050357	-1.5049	-0.00074182	492.9436864893202	32.298	0.35714	32.298	32.127	32.485	0					12	6	3	0	0	0	1.0004	1	10379	10379		0.40827	0	1	2554000	+		34236	24071	25043	25216	33312	33312					0.09209140005577865
LSWRVRTF	8	Unmodified	_LSWRVRTF_					0	0	0		nc|ENSG00000198598|Q9ULZ9-2|MMP17;ENSG00000198598|ENST00000360564|MMP17	nc|ENSG00000198598|Q9ULZ9-2|MMP17	nc|ENSG00000198598|Q9ULZ9-2|MMP17	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1813354492188	2	532.803626	1063.5927	-0.99485	-0.00053006	0.44727	0.00023831	-0.54758	-0.00029175	532.8034534512599	67.68	0.60678	67.68	67.348	67.955	0					16	11	2	0	0	0	0.95424	1	24536	24536		13.906	0	1	1270200			34237	9289	25044	25217	33313	33313					0.06344575153934784
LSWSGLCTVWA	11	Unmodified	_LSWSGLCTVWA_					0	0	0			REV__ENST00000377103.2_1_20:23029966-23030299:-|nuORF	REV__ENST00000377103.2_1_20:23029966-23030299:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	612.1996459960938	2	611.799891	1221.58523	-0.85412	-0.00052255	0.28696	0.00017556	-0.56715	-0.00034698	611.8000575853943	34.199	0.4585	34.952	34.753	35.211	0.75225					12	8	2	0	0	0	0.72801	1	12330	12330		10.8	1.4164	1	6402400	+		34238	24156	25045	25218	33314	33314					-0.016699452286275118
LSWSGLCTVWA	11	Unmodified	_LSWSGLCTVWA_					0	0	0			REV__ENST00000377103.2_1_20:23029966-23030299:-|nuORF	REV__ENST00000377103.2_1_20:23029966-23030299:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	611.799891	1221.58523	-0.85412	-0.00052255	0.28696	0.00017556	-0.56715	-0.00034698	611.8000575853943	34.199	0.4585	34.952	34.753	35.211	0.75225	-0.046543	-0.00024869	NaN	10.8	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6402400	+		34239	24156	25045	25218							-0.016699452286275118
LSWSRARRRRR	11	Unmodified	_LSWSRARRRRR_					0	0	0			REV__CACTIN|p.P111L|1|0.29|ENSG00000105298|chr19:3623998-3623998|G/A|missense_variant	REV__CACTIN|p.P111L|1|0.29|ENSG00000105298|chr19:3623998-3623998|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	750.4905395507812	2	750.448166	1498.88178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.72	1	127.72	127.22	128.22	0								0	0	0	0.16302	1	48989	48989		2.9952	1.8019	1		+		34240	15558	25046	25219	33315	33315					0.15229277833736887
LSWSWEAWW	9	Unmodified	_LSWSWEAWW_					0	0	0		ENSG00000163449|ENST00000437356|TMEM169	ENSG00000163449|ENST00000437356|TMEM169	ENSG00000163449|ENST00000437356|TMEM169	MULTI-SECPEP	A375_MHC_IP_R1	1	418.1327209472656	3	417.525825	1249.55564	0.43292	0.00018076	1.6221	0.00067726	2.055	0.00085801	417.5264602854316	35.765	0.30734	35.765	35.522	35.83	0					9	5	2	0	0	0	0.77834	1	11850	11850		2.7352	0.10396	1	1460200			34241	6664	25047	25220	33316	33316					-0.05915141182504158
LSWVDSHIGY	10	Unmodified	_LSWVDSHIGY_					0	0	0			REV__nc|ENSG00000137764|Q13163-4|MAP2K5	REV__nc|ENSG00000137764|Q13163-4|MAP2K5	MULTI-SECPEP	A375_MHC_IP_R1	1	393.6087646484375	3	392.860984	1175.56112	0.26088	0.00010249	-0.099805	-3.9209E-05	0.16108	6.328E-05	392.8609327630355	51.765	0.35559	51.765	51.575	51.93	0					10	6	2	0	0	0	0.93733	1	18371	18371		3.0723	3.0723	1	990480	+		34242	19029	25048	25221	33317	33317					-0.019634623906767956
LSWVQILAD	9	Unmodified	_LSWVQILAD_					0	0	0			REV__NWD1|p.S1147F|2|0.43|ENSG00000188039|chr19:16797867-16797867|C/T|missense_variant	REV__NWD1|p.S1147F|2|0.43|ENSG00000188039|chr19:16797867-16797867|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	522.2155151367188	2	522.78985	1043.56515	-0.50528	-0.00026416	-0.46182	-0.00024143	-0.9671	-0.00050559	522.789426142359	83.858	0.66576	84.598	84.305	84.971	0.73962					28	11	3	0	0	0	0.27742	1	31988	31988		43.772	7.6454	1	3068400	+		34243	22068	25049	25222	33318	33318					0.04510627103036313
LSWVQKGRV	9	Unmodified	_LSWVQKGRV_					0	0	0			REV__ENST00000256383.8_1_14:67827044-67827122:+|nuORF	REV__ENST00000256383.8_1_14:67827044-67827122:+|nuORF	MSMS	A375_MHC_IP_R2	2	358.2801208496094	3	358.213581	1071.61891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.336	1	34.088	33.588	34.588	0.75225								0	0	0	0.14905	1	11935	11935		16.149	0	1		+		34244	23148	25050	25223	33319	33319					0.08596844325415987
LSWWCTSY	8	Unmodified	_LSWWCTSY_					0	0	0			REV__ENST00000567274.5_1_15:43103896-43132622:-|nuORF	REV__ENST00000567274.5_1_15:43103896-43132622:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	523.6690673828125	2	523.226028	1044.4375	-0.76282	-0.00039913	-1.6454	-0.00086091	-2.4082	-0.00126	523.2246095745836	35.617	0.20225	36.38	36.233	36.435	0.76338					5	3	2	0	0	0	0.77488	2	12879	12879;12926		13.508	3.587	1	735150	+		34245	26251	25051	25224	33320;33321	33320					-0.08293836762641149
LSWYININF	9	Unmodified	_LSWYININF_					0	0	0			REV__HRH4|p.M195I|1|0.25|ENSG00000134489|chr18:24476974-24476974|G/A|missense_variant	REV__HRH4|p.M195I|1|0.25|ENSG00000134489|chr18:24476974-24476974|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	585.7229614257812	2	585.303124	1168.5917	-0.91124	-0.00053335	4.1926	0.002454	3.2814	0.0019206	585.3052128752043	52.407	0.40374	53.159	52.932	53.336	0.75225					11	7	2	0	0	0	0.63622	1	19664	19664		20.454	0	1	2599300	+		34246	26758	25052	25225	33322	33322					0.014143159943841965
LSYAAKSLIVV	11	Unmodified	_LSYAAKSLIVV_					0	0	0			REV__ENSG00000141449|ENST00000424526|GREB1L	REV__ENSG00000141449|ENST00000424526|GREB1L	MULTI-SECPEP	A375_MHC_IP_R2	2	388.2580261230469	3	388.572663	1162.69616	-0.55784	-0.00021676	-0.29721	-0.00011549	-0.85504	-0.00033225	388.57247961481556	24.846	0.55875	25.49	25.314	25.873	0.64368					23	10	3	0	0	0	0.9836	1	8175	8175		3.8459	1.4111	1	21739000	+		34247	19268	25053	25226	33323	33323					0.1213201775105972
LSYDQKPYKKM	11	Unmodified	_LSYDQKPYKKM_					0	0	0		ZAP70|p.G536D|1|0.39|ENSG00000115085|chr2:97737881-97737881|G/A|missense_variant	ZAP70|p.G536D|1|0.39|ENSG00000115085|chr2:97737881-97737881|G/A|missense_variant	ZAP70|p.G536D|1|0.39|ENSG00000115085|chr2:97737881-97737881|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	467.64300537109375	3	467.579601	1399.71697	-0.18119	-8.472E-05	-0.89407	-0.00041805	-1.0753	-0.00050277	467.57906164298294	40.475	0.25442	40.475	40.355	40.609	0					5	4	2	0	0	0	0.73557	1	13907	13907		3.5927	0	1	1378800			34248	30177	25054	25227	33324	33324					0.03310240068412895
LSYDQNDGFY	10	Unmodified	_LSYDQNDGFY_					0	0	0		ENSG00000122482|ENST00000337393|ZNF644;nc|ENSG00000122482|Q9H582-2|ZNF644	ENSG00000122482|ENST00000337393|ZNF644	ENSG00000122482|ENST00000337393|ZNF644	MULTI-MSMS	A375_MHC_IP_R1	1	611.2008056640625	2	611.256568	1220.49858	-0.17558	-0.00010732	0.3717	0.0002272	0.19612	0.00011988	611.2566332252501	47.732	1.0598	47.732	47.416	48.476	0					70	20	5	0	0	0	0.70651	1	16712	16712		9.3831	0.63772	1	74753000			34249	3782	25055	25228	33325	33325					-0.10284653249505027
LSYDTVPDTW	10	Unmodified	_LSYDTVPDTW_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	A375_MHC_IP_R2	2	598.6942749023438	2	598.777136	1195.53972	-0.71939	-0.00043076	-0.095105	-5.6947E-05	-0.8145	-0.0004877	598.7771044907463	54.619	0.76156	55.37	55.068	55.83	0.75075					37	14	3	0	0	0	0.60385	1	20744	20744		30.637	6.616	1	9440600			34250	2647	25056	25229	33326	33326					-0.05022892210035934
LSYFDDLLWYF	11	Unmodified	_LSYFDDLLWYF_					0	0	0			REV__ENST00000557373.1_1_14:35344023-35344692:+|nuORF	REV__ENST00000557373.1_1_14:35344023-35344692:+|nuORF	MSMS	A375_MHC_IP_R1	1	741.7521362304688	2	741.353011	1480.69147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.14	1	147.14	146.64	147.64	0								0	0	0	0.16353	1	56252	56252		0.35063	0	1		+		34251	26122	25057	25230	33327	33327					-0.029649111823346175
LSYFDRRSF	9	Unmodified	_LSYFDRRSF_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	A375_MHC_IP_R1	1	397.9364318847656	3	397.536612	1189.58801	-0.21633	-8.6E-05	0.28534	0.00011343	0.069011	2.7434E-05	397.5367040946085	53.303	0.70999	53.303	52.997	53.707	0					30	13	3	0	0	0	0.095445	1	18959	18959		51.488	25.467	1	6052500			34252	2483	25058	25231	33328	33328					0.0007964622050167236
LSYFDRRSF	9	Unmodified	_LSYFDRRSF_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	A375_MHC_IP_R2	2	397.9364929199219	3	397.536612	1189.58801	-0.54418	-0.00021633	0.23553	9.3631E-05	-0.30865	-0.0001227	397.5366711522169	52.558	0.60696	53.31	53.032	53.639	0.75225					25	11	3	0	0	0	0.18338	1	19801	19801		39.213	18.632	1	8514500			34253	2483	25058	25231	33329	33329					0.0007964622050167236
LSYFIFRMLIS	11	Unmodified	_LSYFIFRMLIS_					0	0	0		ENST00000307296.7_1_3:33908633-33908810:+|nuORF	ENST00000307296.7_1_3:33908633-33908810:+|nuORF	ENST00000307296.7_1_3:33908633-33908810:+|nuORF	MSMS	A375_MHC_IP_R2	2	695.28076171875	2	695.383591	1388.75263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.152	1	82.895	82.395	83.395	0.74293								0	0	0	0.16179	1	31205	31205		9.3831	0.63772	1				34254	10588	25059	25232	33330	33330					0.07380322316112142
LSYFTTQSW	9	Unmodified	_LSYFTTQSW_					0	0	0		ENSG00000196074|ENST00000357552|SYCP2	ENSG00000196074|ENST00000357552|SYCP2	ENSG00000196074|ENST00000357552|SYCP2	MULTI-SECPEP	A375_MHC_IP_R2	2	566.6600341796875	2	566.769114	1131.52368	-0.32243	-0.00018274	-0.638	-0.0003616	-0.96043	-0.00054434	566.7698608921592	64.289	1.3228	65.029	64.292	65.615	0.74022					51	25	3	0	0	0	0.55359	1	24232	24232		15.847	2.8047	1	5642200			34255	8989	25060	25233	33331	33331					-0.03682553656290111
LSYFYKCPV	9	Unmodified	_LSYFYKCPV_					0	0	0		ENSG00000062582|ENST00000317534|MRPS24	ENSG00000062582|ENST00000317534|MRPS24	ENSG00000062582|ENST00000317534|MRPS24	MULTI-SECPEP	A375_MHC_IP_R2	2	560.6798706054688	2	560.280803	1118.54705	-1.1073	-0.00062038	-0.054726	-3.0662E-05	-1.162	-0.00065104	560.2808973075144	33.553	0.30419	34.305	34.146	34.45	0.75225					10	5	3	0	0	0	0.60917	1	12079	12079		13.906	0	1	2113500			34256	1331	25061	25234	33332	33332					-0.007478311433260387
LSYGWAATSV	10	Unmodified	_LSYGWAATSV_					0	0	0			REV__ENST00000379400.7_1_20:4781691-4803023:-|nuORF	REV__ENST00000379400.7_1_20:4781691-4803023:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	528.16357421875	2	527.763832	1053.51311	-0.27304	-0.0001441	-0.58415	-0.00030829	-0.85718	-0.00045239	527.7635153643962	92.528	0.40628	92.528	92.312	92.718	0					13	7	2	0	0	0	0.78945	1	34020	34020		25.399	7.253	1	1201000	+		34257	24198	25062	25235	33333	33333					-0.011505363107289668
LSYGWAATSV	10	Unmodified	_LSYGWAATSV_					0	0	0			REV__ENST00000379400.7_1_20:4781691-4803023:-|nuORF	REV__ENST00000379400.7_1_20:4781691-4803023:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	527.763832	1053.51311	-0.4098	-0.00021628	-1.3325	-0.00070325	-1.7423	-0.00091953	527.7630056078651	91.742	0.5067	92.476	92.273	92.78	0.7345	-0.025848	-0.00068036	NaN	25.399	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1062100	+		34258	24198	25062	25235							-0.011505363107289668
LSYIKLCGNIS	11	Unmodified	_LSYIKLCGNIS_					0	0	0			REV__ENST00000556631.1_1_14:56139269-56139539:+|nuORF	REV__ENST00000556631.1_1_14:56139269-56139539:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	403.9159240722656	3	404.221525	1209.64274	-0.61616	-0.00024907	-0.53883	-0.00021781	-1.155	-0.00046687	404.22140048199316	37.865	0.60986	37.865	37.658	38.268	0					15	11	2	0	0	0	0.99018	1	12879	12879		3.8459	1.9184	1	2066900	+		34259	26111	25063	25236	33334	33334					0.046308969769143005
LSYKAKEVVKM	11	Unmodified	_LSYKAKEVVKM_					0	0	0			REV__ENSG00000197786|ENST00000357377|OR5B17	REV__ENSG00000197786|ENST00000357377|OR5B17	MULTI-MSMS	A375_MHC_IP_R1	1	649.2733154296875	2	648.373223	1294.73189	-0.56353	-0.00036538	0.35704	0.0002315	-0.20649	-0.00013388	648.3742787953945	131.64	2.1282	131.64	130.87	133	0					94	41	4	0	0	0	0.73647	1	51041	51041		2.7352	0	1	24364000	+		34260	22315	25064	25237	33335	33335					0.09631731936428878
LSYKRLTPL	9	Unmodified	_LSYKRLTPL_					0	0	0			REV__ENST00000287908.7_1_7:89866161-89866233:+|nuORF	REV__ENST00000287908.7_1_7:89866161-89866233:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	365.28521728515625	3	364.225486	1089.65463	-0.11339	-4.1298E-05	-0.53707	-0.00019561	-0.65045	-0.00023691	364.2254374345822	50.943	0.45416	51.697	51.462	51.917	0.75406					16	8	4	0	0	0	0.54799	1	19184	19184		17.443	7.8987	1	1506500	+		34261	23342	25065	25238	33336	33336					0.11338881782421595
LSYLGRLPE	9	Unmodified	_LSYLGRLPE_					0	0	0		ENST00000440408.5_1_Y:14774428-14774548:+|nuORF	ENST00000440408.5_1_Y:14774428-14774548:+|nuORF	ENST00000440408.5_1_Y:14774428-14774548:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	524.6957397460938	2	524.295299	1046.57605	-0.60739	-0.00031845	0.16368	8.5819E-05	-0.4437	-0.00023263	524.2954175138327	96.585	1.1641	97.341	96.658	97.822	0.75586					69	22	5	0	0	0	0.53367	1	36817	36817		18.146	2.2992	1	72973000			34262	11970	25066	25239	33337	33337					0.054620294773030764
LSYLLPVSL	9	Unmodified	_LSYLLPVSL_					0	0	0			REV__ENSG00000183307|ENST00000331437|TMEM121B	REV__ENSG00000183307|ENST00000331437|TMEM121B	MULTI-SECPEP	A375_MHC_IP_R2	2	502.1710205078125	2	502.804968	1003.59538	-0.6858	-0.00034482	-2.6539	-0.0013344	-3.3397	-0.0016792	502.8037196720349	40.098	0.40535	40.872	40.626	41.031	0.77451					9	6	2	0	0	0	0.67483	1	14837	14837		10.074	0.6908	1	1474700	+		34263	21748	25067	25240	33338	33338					0.09372985768243325
LSYLYEKLY	9	Unmodified	_LSYLYEKLY_					0	0	0		nc|ENSG00000137944|Q6YP21-2|KYAT3;ENST00000446900.6_1_1:89430347-89454033:-|nuORF;nc|ENSG00000137944|Q6YP21-3|KYAT3;ENSG00000137944|ENST00000260508|KYAT3	nc|ENSG00000137944|Q6YP21-2|KYAT3	nc|ENSG00000137944|Q6YP21-2|KYAT3	MULTI-SECPEP	A375_MHC_IP_R2	2	397.2997131347656	3	397.881385	1190.62233	-0.14743	-5.866E-05	3.8511	0.0015323	3.7037	0.0014736	397.8829294269623	32.686	0.25314	33.423	33.265	33.518	0.73691					6	4	2	0	0	0	0.78798	1	11607	11607		2.2828	0	1	1131500			34264	4936	25068	25241	33339	33339					0.03464049588774287
LSYNEYEE	8	Unmodified	_LSYNEYEE_					0	0	0			REV__tr|U7SUH8|U7SUH8_FUSNUHPr(Ser)kinase/phosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01425PE=3SV=1	REV__tr|U7SUH8|U7SUH8_FUSNUHPr(Ser)kinase/phosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01425PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1767578125	2	523.719287	1045.42402	-0.25937	-0.00013584	1.4629	0.00076617	1.2036	0.00063033	523.7196560409484	42.904	0.55904	42.904	42.638	43.197	0					15	10	2	0	0	0	0.972	1	14803	14803		2.0598	0	1	1513800	+		34265	28561	25069	25242	33340	33340					-0.09687416060887699
LSYNLRLMG	9	Unmodified	_LSYNLRLMG_					0	0	0			REV__ENST00000495935.1_1_6:112021235-112021421:-|nuORF	REV__ENST00000495935.1_1_6:112021235-112021421:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	534.739501953125	2	533.789327	1065.5641	-0.74937	-0.00040001	-0.45151	-0.00024101	-1.2009	-0.00064102	533.7893422177941	80.06	0.76319	80.06	79.778	80.541	0					36	14	3	0	0	0	0.38603	1	29390	29390		25.399	4.9848	1	10448000	+		34266	25453	25070	25243	33341	33341					0.03394089462494776
LSYQGGSFHGE	11	Unmodified	_LSYQGGSFHGE_					0	0	0		ENST00000262144.10_1_16:74907771-74907879:-|nuORF	ENST00000262144.10_1_16:74907771-74907879:-|nuORF	ENST00000262144.10_1_16:74907771-74907879:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	591.681640625	2	591.264727	1180.5149	-0.40235	-0.00023789	1.8644	0.0011023	1.462	0.00086444	591.2647281472514	47.452	0.6129	48.213	47.919	48.532	0.76128					26	11	3	0	0	0	0.71476	1	17719	17719		14.405	1.3629	1	6613500			34267	10292	25071	25244	33342	33342					-0.06813527292752042
LSYQPAALGV	10	Unmodified	_LSYQPAALGV_					0	0	0		nc|ENSG00000175224|O75143|ATG13;ENSG00000175224|ENST00000683050|ATG13	nc|ENSG00000175224|O75143|ATG13	nc|ENSG00000175224|O75143|ATG13	MULTI-MSMS	A375_MHC_IP_R2	2	510.6819763183594	2	509.782025	1017.5495	-0.73107	-0.00037269	-0.64251	-0.00032754	-1.3736	-0.00070023	509.78176763979206	103.13	0.61087	103.89	103.58	104.19	0.76428					17	11	2	0	0	0	0.63639	1	39077	39077		18.146	2.2992	1	1713700			34268	7944	25072	25245	33343	33343					0.04142340586008686
LSYRESQS	8	Unmodified	_LSYRESQS_					0	0	0			REV__nc|ENSG00000162391|Q8WW52-2|FAM151A	REV__nc|ENSG00000162391|Q8WW52-2|FAM151A	MSMS	A375_MHC_IP_R2	2	485.17364501953125	2	485.235439	968.456324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.16	1	71.894	71.394	72.394	0.73421								0	0	0	0.16876	1	26988	26988		24.674	0	1		+		34269	20248	25073	25246	33344	33344					-0.029165838672270183
LSYRGNAAF	9	Unmodified	_LSYRGNAAF_					0	0	0			REV__ENSG00000137975|ENST00000370565|CLCA2	REV__ENSG00000137975|ENST00000370565|CLCA2	MULTI-SECPEP	A375_MHC_IP_R2	2	499.3009948730469	2	499.756341	997.498129	-0.57709	-0.0002884	0.29237	0.00014612	-0.28472	-0.00014229	499.7563447537451	45.563	0.40472	46.328	46.048	46.453	0.76519					10	7	2	0	0	0	0.65246	1	17080	17080		15.847	0	1	1500000	+		34270	19053	25074	25247	33345	33345					-0.0007198338804528248
LSYRWRRRKR	10	Unmodified	_LSYRWRRRKR_					0	0	0			REV__ENST00000433071.2_1_21:32931573-32932426:+|nuORF	REV__ENST00000433071.2_1_21:32931573-32932426:+|nuORF	MSMS	A375_MHC_IP_R1	1	738.9413452148438	2	738.942185	1475.86982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.525	1	76.525	76.025	77.025	0								0	0	0	0.15591	1	27897	27897		1.6526	0.32309	1		+		34271	24724	25075	25248	33346	33346					0.15091661090559683
LSYSRPRY	8	Unmodified	_LSYSRPRY_					0	0	0		ENST00000480222.1_1_11:116744315-116744384:-|nuORF	ENST00000480222.1_1_11:116744315-116744384:-|nuORF	ENST00000480222.1_1_11:116744315-116744384:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	520.6866455078125	2	521.277441	1040.54033	-0.3049	-0.00015894	-1.2312	-0.00064179	-1.5361	-0.00080073	521.2768580535925	54.037	0.75984	54.037	53.707	54.467	0					15	13	2	0	0	0	0.972	1	19428	19428		0.6015	0	1	1175600			34272	12494	25076	25249	33347	33347					0.021679920203496295
LSYSSLLETI	10	Unmodified	_LSYSSLLETI_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.R7429Ifs*19|1|0.07|ENSG00000131018|chr6:152214911-152214966|TCTTTCTGTAGTCTGAGAGGAGATCAGAGACCAATGGCGGTTCAGATTCTGCATTC/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000471834.1_1_6:152657861-152688565:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	A375_MHC_IP_R1	1	563.7049560546875	2	563.305529	1124.59651	-0.50641	-0.00028527	-0.54458	-0.00030677	-1.051	-0.00059203	563.3051508745608	89.852	1.0632	89.852	89.323	90.387	0					32	20	3	0	0	0	0.52461	1	33038	33038		43.858	0	1	2637400			34273	4300	25077	25250	33348	33348					0.03919155346511616
LSYVIRTTAL	10	Unmodified	_LSYVIRTTAL_					0	0	0		nc|ENSG00000111846|Q8N0V5-2|GCNT2;ENST00000459872.1_1_6:10557103-10619499:+|nuORF	nc|ENSG00000111846|Q8N0V5-2|GCNT2	nc|ENSG00000111846|Q8N0V5-2|GCNT2	MULTI-SECPEP	A375_MHC_IP_R1	1	379.9605712890625	3	379.560646	1135.66011	0.188	7.1359E-05	0.18122	6.8784E-05	0.36922	0.00014014	379.56069907230227	46.825	1.0722	46.825	46.444	47.517	0					66	20	5	0	0	0	0.51493	1	16390	16390		32.898	0	1	106120000			34274	14544	25078	25251	33349	33349					0.09770560574224874
LSYVIRTTAL	10	Unmodified	_LSYVIRTTAL_					0	0	0		nc|ENSG00000111846|Q8N0V5-2|GCNT2;ENST00000459872.1_1_6:10557103-10619499:+|nuORF	nc|ENSG00000111846|Q8N0V5-2|GCNT2	nc|ENSG00000111846|Q8N0V5-2|GCNT2	MULTI-MSMS	A375_MHC_IP_R2	2	379.9607238769531	3	379.560646	1135.66011	0.086828	3.2957E-05	0.03992	1.5152E-05	0.12675	4.8109E-05	379.5606259582974	45.863	1.2647	46.628	46.252	47.517	0.76519					71	24	5	0	0	0	0.42123	1	17086	17086		32.898	10.123	1	106680000			34275	14544	25078	25251	33350	33350					0.09770560574224874
LSYVRIPG	8	Unmodified	_LSYVRIPG_					0	0	0		nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1;ENSG00000011143|ENST00000393119|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	MSMS	A375_MHC_IP_R1	1	452.5679626464844	2	452.766178	903.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.301	1	61.301	60.801	61.801	0								0	0	0	0.16876	1	22094	22094		18.135	1.0221	1				34276	992	25079	25252	33351	33351					0.062183926227248776
LSYYDKDDM	9	Unmodified	_LSYYDKDDM_					0	0	0			REV__ENSG00000151623|ENST00000358102|NR3C2	REV__ENSG00000151623|ENST00000358102|NR3C2	MULTI-MSMS	A375_MHC_IP_R2	2	574.7109375	2	575.242072	1148.46959	-0.3558	-0.00020467	-0.52255	-0.00030059	-0.87835	-0.00050526	575.2416908343617	97.373	0.45779	98.129	97.974	98.432	0.75586					12	7	2	0	0	0	0.6898	1	37025	37025		7.9102	0	1	1444300	+		34277	19762	25080	25253	33352	33352					-0.09870513870168907
LSYYDKDDM	9	Unmodified	_LSYYDKDDM_					0	0	0			REV__ENSG00000151623|ENST00000358102|NR3C2	REV__ENSG00000151623|ENST00000358102|NR3C2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	575.242072	1148.46959	-0.3558	-0.00020467	-0.52255	-0.00030059	-0.87835	-0.00050526	575.2416908343617	97.373	0.45779	98.129	97.974	98.432	0.75586	-0.040816	0.00022635	NaN	7.9102	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1444300	+		34278	19762	25080	25253							-0.09870513870168907
LTAAQQQQY	9	Unmodified	_LTAAQQQQY_					0	0	0		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2;nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	MULTI-MSMS	A375_MHC_IP_R1	1	526.1637573242188	2	525.764363	1049.51417	-0.697	-0.00036646	-0.58654	-0.00030838	-1.2835	-0.00067484	525.7638691615218	28.909	0.45516	28.909	28.694	29.149	0					16	8	3	0	0	0	0.015701	1	9011	9011		88.954	10.804	1	4242200			34279	4592;1273	25081	25254	33353	33353					-0.008603219417864238
LTADGLYLY	9	Unmodified	_LTADGLYLY_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;HECTD4|p.T2131Nfs*17|1|0.26|ENSG00000173064|chr12:112228151-112228152|-/G|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-5|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MSMS	A375_MHC_IP_R2	2	1028.4349365234375	1	1028.52989	1027.52261	0.2087	0.00021466	0.61605	0.00063363	0.82475	0.00084828	1028.5298627113623	110.89	0.76543	111.63	111.29	112.06	0.73691					30	14	3	0	0	0	0.1478	1	41759	41759		42.095	0	1	8366500			34280	7762	25082	25255	33354	33354					0.009952319748208538
LTADSHPSY	9	Unmodified	_LTADSHPSY_					0	0	0		ENSG00000101152|ENST00000360864|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	MSMS	A375_MHC_IP_R1	1	495.6755676269531	2	495.729989	989.445425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.883	1	25.883	25.383	26.383	0								0	0	0	0.15411	1	7628	7628		14.838	0	1				34281	2256	25083	25256	33355	33355					-0.049719862415145144
LTAEEIKRE	9	Unmodified	_LTAEEIKRE_					0	0	0		ENSG00000167671|ENST00000301281|UBXN6;nc|ENSG00000167671|Q9BZV1-2|UBXN6;ENST00000588238.1_1_19:4446489-4446828:-|nuORF	ENSG00000167671|ENST00000301281|UBXN6	ENSG00000167671|ENST00000301281|UBXN6	MSMS	A375_MHC_IP_R1	1	544.7106323242188	2	544.800946	1087.58734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.03	1	88.03	87.53	88.53	0								0	0	0	0.1535	1	32310	32310		15.847	0.5987	1				34282	7208	25084	25257	33356	33356					0.04704806780819126
LTAGRDQLSL	10	Unmodified	_LTAGRDQLSL_					0	0	0			REV__ENST00000525586.5_1_11:119185190-119185971:-|nuORF	REV__ENST00000525586.5_1_11:119185190-119185971:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	537.7008056640625	2	537.301113	1072.58767	-0.83877	-0.00045067	-0.57201	-0.00030734	-1.4108	-0.00075802	537.301272437129	64.611	0.5091	65.351	65.157	65.666	0.74023					21	9	3	0	0	0	0.60238	1	24540	24540		32.786	0	1	2153300	+		34283	16679	25085	25258	33357	33357					0.054282265006804664
LTAKVFRTY	9	Unmodified	_LTAKVFRTY_					0	0	0		ENSG00000198900|ENST00000361337|TOP1;ENSG00000184428|ENST00000329245|TOP1MT;nc|ENSG00000184428|Q969P6-2|TOP1MT	ENSG00000198900|ENST00000361337|TOP1;ENSG00000184428|ENST00000329245|TOP1MT	ENSG00000198900|ENST00000361337|TOP1	MULTI-SECPEP	A375_MHC_IP_R1	1	367.28192138671875	3	366.88172	1097.62333	0.10935	4.0119E-05	0.40609	0.00014899	0.51544	0.00018911	366.88178735749847	39.998	0.5102	39.998	39.794	40.304	0					27	9	4	0	0	0	0.47206	1	13710	13710		39.213	24.808	1	12800000			34284	9362;8583	25086	25259	33358	33358					0.07842308748331561
LTAKVFRTY	9	Unmodified	_LTAKVFRTY_					0	0	0		ENSG00000198900|ENST00000361337|TOP1;ENSG00000184428|ENST00000329245|TOP1MT;nc|ENSG00000184428|Q969P6-2|TOP1MT	ENSG00000198900|ENST00000361337|TOP1;ENSG00000184428|ENST00000329245|TOP1MT	ENSG00000198900|ENST00000361337|TOP1	MULTI-MSMS	A375_MHC_IP_R2	2	367.2817077636719	3	366.88172	1097.62333	-0.039608	-1.4531E-05	-0.073007	-2.6785E-05	-0.11261	-4.1316E-05	366.8816619725439	39.114	0.61158	39.888	39.658	40.269	0.77451					30	11	4	0	0	0	0.073067	1	14410	14410		44.392	24.766	1	18196000			34285	9362;8583	25086	25259	33359	33359					0.07842308748331561
LTAKVFRTY	9	Unmodified	_LTAKVFRTY_					0	0	0		ENSG00000198900|ENST00000361337|TOP1;ENSG00000184428|ENST00000329245|TOP1MT;nc|ENSG00000184428|Q969P6-2|TOP1MT	ENSG00000198900|ENST00000361337|TOP1;ENSG00000184428|ENST00000329245|TOP1MT	ENSG00000198900|ENST00000361337|TOP1	MULTI-SECPEP	A375_MHC_IP_R2	2	550.1748046875	2	549.818941	1097.62333	-0.96346	-0.00052973	-0.048866	-2.6868E-05	-1.0123	-0.0005566	549.8188137074285	39.114	0.4088	39.888	39.607	40.016	0.77451					9	7	2	0	0	0	0.63763	1	14404	14404		22.658	3.4011	1	2676200			34286	9362;8583	25086	25259	33360	33360					0.07842308748331561
LTALGKVSY	9	Unmodified	_LTALGKVSY_					0	0	0		nc|ENSG00000164542|Q8NCT3|MATCAP2;nc|ENSG00000164542|Q8NCT3-5|MATCAP2;nc|ENSG00000164542|Q8NCT3-3|MATCAP2;nc|ENSG00000164542|Q8NCT3-2|MATCAP2;ENSG00000164542|ENST00000440378|MATCAP2	nc|ENSG00000164542|Q8NCT3|MATCAP2	nc|ENSG00000164542|Q8NCT3|MATCAP2	MULTI-MSMS	A375_MHC_IP_R2	2	476.6788024902344	2	476.279118	950.543683	-0.51039	-0.00024309	-0.39238	-0.00018688	-0.90277	-0.00042997	476.27898599507824	45.854	0.35085	46.62	46.353	46.704	0.76518					12	6	2	0	0	0	0.32899	1	17151	17151		28.487	3.4959	1	2019000			34287	14730	25087	25260	33361	33361					0.06643242074324007
LTALGKVSY	9	Unmodified	_LTALGKVSY_					0	0	0		nc|ENSG00000164542|Q8NCT3|MATCAP2;nc|ENSG00000164542|Q8NCT3-5|MATCAP2;nc|ENSG00000164542|Q8NCT3-3|MATCAP2;nc|ENSG00000164542|Q8NCT3-2|MATCAP2;ENSG00000164542|ENST00000440378|MATCAP2	nc|ENSG00000164542|Q8NCT3|MATCAP2	nc|ENSG00000164542|Q8NCT3|MATCAP2	MULTI-MATCH	A375_MHC_IP_R1	1		2	476.279118	950.543683	-0.66664	-0.0003175	0.17192	8.1884E-05	-0.49471	-0.00023562	476.2791230318692	46.697	0.40611	46.697	46.495	46.901	0	0.038879	0.00019262	NaN	28.487	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1568900			34288	14730	25087	25260							0.06643242074324007
LTALHSLQEKF	11	Unmodified	_LTALHSLQEKF_					0	0	0			REV__nc|ENSG00000158286|Q6ZRF8-4|RNF207	REV__nc|ENSG00000158286|Q6ZRF8-4|RNF207	MULTI-SECPEP	A375_MHC_IP_R2	2	428.94317626953125	3	429.574955	1285.70304	-0.23774	-0.00010213	-0.56521	-0.0002428	-0.80295	-0.00034493	429.5748391558577	30.824	0.25197	31.542	31.417	31.669	0.71857					7	4	2	0	0	0	0.99411	1	10906	10906		4.1166	2.3744	1	1499500	+		34289	20068	25088	25261	33362	33362					0.07161330631652163
LTALIKCI	8	Unmodified	_LTALIKCI_					0	0	0			REV__ENST00000380523.8_1_X:14038468-14044204:-|nuORF	REV__ENST00000380523.8_1_X:14038468-14044204:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	438.2923278808594	2	437.775157	873.53576	-0.84423	-0.00036958	0.30589	0.00013391	-0.53834	-0.00023567	437.77528034220825	53.472	0.40946	54.223	53.995	54.404	0.75105					13	7	2	0	0	0	0.77515	1	20251	20251		12.532	0	1	2503600	+		34290	24217	25089	25262	33363	33363					0.0939339155321477
LTALIKCI	8	Unmodified	_LTALIKCI_					0	0	0			REV__ENST00000380523.8_1_X:14038468-14044204:-|nuORF	REV__ENST00000380523.8_1_X:14038468-14044204:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	437.775157	873.53576	-0.84423	-0.00036958	0.30589	0.00013391	-0.53834	-0.00023567	437.77528034220825	53.472	0.40946	54.223	53.995	54.404	0.75105	-0.08308	0.00025662	NaN	12.532	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2503600	+		34291	24217	25089	25262							0.0939339155321477
LTALKTLHG	9	Unmodified	_LTALKTLHG_					0	0	0			REV__ENSG00000153107|ENST00000341068|ANAPC1	REV__ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MSMS	A375_MHC_IP_R2	2	477.69219970703125	2	477.292559	952.570566	-0.60915	-0.00029074	0.0075105	3.5847E-06	-0.60164	-0.00028716	477.2925210714261	45.356	1.7232	46.121	45.285	47.008	0.76518					96	33	4	0	0	0	0.34064	1	17185	17185		27.629	0	1	70817000	+		34292	19827	25090	25263	33364	33364					0.09238350685529895
LTALLRKSL	9	Unmodified	_LTALLRKSL_					0	0	0		ENST00000402456.4_1_19:43414555-43422019:-|nuORF	ENST00000402456.4_1_19:43414555-43422019:-|nuORF	ENST00000402456.4_1_19:43414555-43422019:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	508.1132507324219	2	507.837134	1013.65972	-0.66813	-0.0003393	0.14422	7.3242E-05	-0.5239	-0.00026606	507.83719506748326	66.971	0.40932	66.971	66.785	67.194	0					13	7	2	0	0	0	0.73363	1	24295	24295		10.824	0	1	539900			34293	11565	25091	25264	33365	33365					0.15343185645053836
LTALSRWYLY	10	Unmodified	_LTALSRWYLY_					0	0	0		ENSG00000198133|ENST00000554480|TMEM229B	ENSG00000198133|ENST00000554480|TMEM229B	ENSG00000198133|ENST00000554480|TMEM229B	MSMS	A375_MHC_IP_R2	2	643.3900146484375	2	643.350606	1284.68666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.46	1	115.17	114.67	115.67	0.70985								0	0	0	0.15435	1	43148	43148		6.7232	0	1				34294	9233	25092	25265	33366	33366					0.05570249465563393
LTAMSKVR	8	Unmodified	_LTAMSKVR_					0	0	0		ENST00000572607.1_1_17:454958-465900:-|nuORF	ENST00000572607.1_1_17:454958-465900:-|nuORF	ENST00000572607.1_1_17:454958-465900:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	453.1651916503906	2	453.265487	904.516422	-0.051839	-2.3497E-05	3.9732	0.0018009	3.9214	0.0017774	453.26882672317845	143.1	0.96408	143.13	142.53	143.5	0.030746					23	18	3	0	0	0	0.972	1	55919	55919		2.5775	0.27475	1	1690700			34295	13620	25093	25266	33367	33367					0.060344352623019404
LTAPQFCSWCT	11	Unmodified	_LTAPQFCSWCT_					0	0	0			REV__ENST00000522695.5_1_8:74332630-74332726:-|nuORF	REV__ENST00000522695.5_1_8:74332630-74332726:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	629.1929931640625	2	628.775559	1255.53657	-0.84408	-0.00053074	-0.63963	-0.00040218	-1.4837	-0.00093292	628.7750331013115	68.438	0.60947	68.438	68.108	68.717	0					19	11	2	0	0	0	0.72565	1	24698	24698		13.042	0.80181	1	3739100	+		34296	25735	25094	25267	33368	33368					-0.08098181860054865
LTAQDENGDTP	11	Unmodified	_LTAQDENGDTP_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-SECPEP	A375_MHC_IP_R2	2	580.1680297851562	2	580.756932	1159.49931	-0.61965	-0.00035987	-2.1221	-0.0012324	-2.7418	-0.0015923	580.7559798522872	71.607	0.4565	72.341	72.162	72.618	0.73421					12	8	2	0	0	0	0.88813	1	27152	27152		19.362	0	1	1595200			34297	1647	25095	25268	33369	33369					-0.07405858600463944
LTAQRAAI	8	Unmodified	_LTAQRAAI_					0	0	0		ENSG00000174032|ENST00000519676|SLC25A30;nc|ENSG00000174032|Q5SVS4-2|SLC25A30;ENST00000523988.5_1_13:45973026-45978512:-|nuORF	ENSG00000174032|ENST00000519676|SLC25A30	ENSG00000174032|ENST00000519676|SLC25A30	MULTI-SECPEP	A375_MHC_IP_R2	2	421.9556579589844	2	422.255977	842.497401	-0.16432	-6.9387E-05	0.031739	1.3402E-05	-0.13259	-5.5985E-05	422.2559400962307	39.754	0.40702	40.529	40.32	40.727	0.77451					17	7	3	0	0	0	0.77651	1	14751	14751		42.095	0	1	3786500			34298	7851	25096	25269	33370	33370					0.06985221962884225
LTAREAKQI	9	Unmodified	_LTAREAKQI_					0	0	0		nc|ENSG00000275954|A6NER0|TBC1D3F;ENSG00000278599|ENST00000621587|TBC1D3E;ENSG00000278299|ENST00000622206|TBC1D3C;ENSG00000274933|ENST00000621034|TBC1D3I;ENSG00000274808|ENST00000611257|TBC1D3B;ENSG00000274611|ENST00000620215|TBC1D3;ENSG00000274512|ENST00000612727|TBC1D3L;ENSG00000274419|ENST00000616101|TBC1D3D;ENSG00000274226|ENST00000610350|TBC1D3H;ENSG00000273513|ENST00000620247|TBC1D3K;ENSG00000260287|ENST00000569055|TBC1D3G;nc|ENSG00000274611|Q8IZP1-2|TBC1D3;ENSG00000275954|ENST00000620210|TBC1D3F	nc|ENSG00000275954|A6NER0|TBC1D3F	nc|ENSG00000275954|A6NER0|TBC1D3F	MULTI-SECPEP	A375_MHC_IP_R2	2	515.7054443359375	2	515.306198	1028.59784	-1.0655	-0.00054908	0.42777	0.00022043	-0.63776	-0.00032864	515.3063071332109	38.197	0.41002	38.971	38.739	39.149	0.77451					16	7	3	0	0	0	0.14572	1	14032	14032		38.176	0	1	8913700			34299	9930	25097	25270	33371	33371					0.08468834225891442
LTARKGVTTL	10	Unmodified	_LTARKGVTTL_					0	0	0			REV__tr|U7SP94|U7SP94_FUSNUAdenylosuccinatelyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01775PE=3SV=1	REV__tr|U7SP94|U7SP94_FUSNUAdenylosuccinatelyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01775PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	354.280517578125	3	353.888874	1058.64479	-0.016532	-5.8503E-06	-0.18696	-6.6164E-05	-0.2035	-7.2015E-05	353.8887809077276	33.573	0.40587	33.573	33.342	33.748	0					18	7	3	0	0	0	0.72061	1	11003	11003		3.0723	0	1	5736800	+		34300	28351	25098	25271	33372	33372					0.11781693777038527
LTARQRALL	9	Unmodified	_LTARQRALL_					0	0	0		ENSG00000115274|ENST00000233331|INO80B	ENSG00000115274|ENST00000233331|INO80B	ENSG00000115274|ENST00000233331|INO80B	MULTI-SECPEP	A375_MHC_IP_R1	1	520.664306640625	2	521.330008	1040.64546	-0.49416	-0.00025762	0.47256	0.00024636	-0.021598	-1.126E-05	521.3304572227732	60.121	0.25482	60.121	59.955	60.21	0					7	4	2	0	0	0	0.77834	1	21638	21638		0.52476	0	1	516450			34301	3293	25099	25272	33373	33373					0.12676533216745156
LTARRWLW	8	Unmodified	_LTARRWLW_					0	0	0		ENST00000463462.5_1_7:148982563-148988696:+|nuORF;ENST00000426347.5_1_7:148982610-148985528:+|nuORF;ENST00000481817.5_1_7:148984700-148990670:+|nuORF	ENST00000463462.5_1_7:148982563-148988696:+|nuORF	ENST00000463462.5_1_7:148982563-148988696:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	551.7179565429688	2	551.319443	1100.62433	-0.70783	-0.00039024	-1.3242	-0.00073004	-2.032	-0.0011203	551.318462225649	80.681	0.91295	80.681	80.187	81.1	0					35	17	4	0	0	0	0.69122	1	29452	29452		48.346	0	1	9303500			34302	11804	25100	25273	33374	33374					0.07804567907896853
LTARSTLV	8	Unmodified	_LTARSTLV_					0	0	0			REV__ENSG00000033100|ENST00000035307|CHPF2	REV__ENSG00000033100|ENST00000035307|CHPF2	MULTI-SECPEP	A375_MHC_IP_R1	1	431.1634521484375	2	430.763635	859.512717	-0.16642	-7.1687E-05	-0.10232	-4.4078E-05	-0.26874	-0.00011577	430.76354002414524	50.591	0.7631	50.591	50.305	51.068	0					28	14	3	0	0	0	0.64636	1	17898	17898		42.095	16.695	1	6272900	+		34303	16305	25101	25274	33375	33375					0.07734088760105351
LTARSTLV	8	Unmodified	_LTARSTLV_					0	0	0			REV__ENSG00000033100|ENST00000035307|CHPF2	REV__ENSG00000033100|ENST00000035307|CHPF2	MULTI-SECPEP	A375_MHC_IP_R2	2	431.1635437011719	2	430.763635	859.512717	-0.51918	-0.00022364	0.31648	0.00013633	-0.2027	-8.7316E-05	430.76368945777955	49.515	0.55628	50.272	50.046	50.602	0.75737					26	10	3	0	0	0	0.55372	1	18591	18591		48.346	10.372	1	11839000	+		34304	16305	25101	25274	33376	33376					0.07734088760105351
LTASGPEQGEA	11	Unmodified	_LTASGPEQGEA_					0	0	0			REV__ENST00000259254.8_1_2:127413658-127447834:+|nuORF	REV__ENST00000259254.8_1_2:127413658-127447834:+|nuORF	MSMS	A375_MHC_IP_R1	1	530.1741943359375	2	530.251286	1058.48802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.365	1	96.365	95.865	96.865	0								0	0	0	0.16124	1	35415	35415		12.241	0.60036	1		+		34305	23172	25102	25275	33377	33377					-0.038886359039452145
LTASNEQNV	9	Unmodified	_LTASNEQNV_					0	0	0			REV__tr|U7T590|U7T590_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00485PE=4SV=1	REV__tr|U7T590|U7T590_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00485PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	489.652099609375	2	488.240721	974.466889	-0.28443	-0.00013887	-0.70823	-0.00034579	-0.99266	-0.00048466	488.24033437495973	99.554	1.7703	99.554	99.117	100.89	0					81	34	4	0	0	0	0.51106	1	36484	36484		19.257	3.4098	1	37531000	+		34306	28821	25103	25276	33378	33378					-0.021366012128055445
LTATQDAHFN	10	Unmodified	_LTATQDAHFN_					0	0	0		ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	MULTI-MSMS	A375_MHC_IP_R2	2	559.6632690429688	2	559.26727	1116.51999	-0.57254	-0.0003202	-3.9338	-0.0022	-4.5063	-0.0025202	559.2645591787817	79.372	0.30276	80.117	79.997	80.299	0.74473					10	5	3	0	0	0	0.66308	1	30134	30134		16.149	2.2431	1	1362300			34307	957	25104	25277	33379	33379					-0.0336122343014722
LTAVGNVLI	9	Unmodified	_LTAVGNVLI_					0	0	0		ENSG00000136939|ENST00000259466|OR1L4	ENSG00000136939|ENST00000259466|OR1L4	ENSG00000136939|ENST00000259466|OR1L4	MULTI-SECPEP	A375_MHC_IP_R2	2	450.6814270019531	2	450.28166	898.548768	-0.52129	-0.00023473	-0.21497	-9.6797E-05	-0.73626	-0.00033152	450.2816163704987	41.247	0.45507	42.022	41.794	42.249	0.77451					13	8	2	0	0	0	0.58271	1	15328	15328		20.454	2.3186	1	2336600			34308	4846	25105	25278	33380	33380					0.09543545936958253
LTAVHLNNL	9	Unmodified	_LTAVHLNNL_					0	0	0		ENST00000372813.3_1_20:43571317-43571440:-|nuORF	ENST00000372813.3_1_20:43571317-43571440:-|nuORF	ENST00000372813.3_1_20:43571317-43571440:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	498.18798828125	2	497.787641	993.56073	-0.46392	-0.00023093	0.29864	0.00014866	-0.16528	-8.2276E-05	497.7877387639973	73.349	0.81512	74.085	73.53	74.345	0.7354					24	15	2	0	0	0	0.4261	1	27813	27813		24.021	0	1	2313100			34309	11214	25106	25279	33381	33381					0.06369162680130103
LTAVVQKRF	9	Unmodified	_LTAVVQKRF_					0	0	0		ENST00000529173.5_1_11:75110591-75112804:+|nuORF;ENST00000407940.1_1_6:7339375-7339741:-|nuORF;ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000407121.1_1_6:100023791-100023977:+|nuORF	ENST00000529173.5_1_11:75110591-75112804:+|nuORF	ENST00000529173.5_1_11:75110591-75112804:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	354.9534912109375	3	354.553715	1060.63931	-0.25747	-9.1286E-05	-0.35446	-0.00012568	-0.61193	-0.00021696	354.5535374739285	31.147	0.40761	31.865	31.669	32.077	0.71857					10	7	2	0	0	0	0.39434	1	11028	11028		24.991	9.7425	1	2051600			34310	5796	25107	25280	33382	33382					0.1114201498521652
LTAYLWIRQIW	11	Unmodified	_LTAYLWIRQIW_					0	0	0		ENSG00000174343|ENST00000310169|CHRNA9	ENSG00000174343|ENST00000310169|CHRNA9	ENSG00000174343|ENST00000310169|CHRNA9	MULTI-MSMS	A375_MHC_IP_R2	2	732.311279296875	2	731.913904	1461.81326	-0.64096	-0.00046913	-1.7568	-0.0012858	-2.3978	-0.001755	731.9119186050967	93.929	0.45573	94.673	94.463	94.919	0.74474					18	8	3	0	0	0	0.73378	1	35720	35720		5.2969	3.9674	1	2109300			34311	7871	25108	25281	33383	33383					0.10082175690695294
LTCFSRWLM	9	Unmodified	_LTCFSRWLM_					0	0	0		ENST00000380995.5_1_22:47570871-47571156:+|nuORF	ENST00000380995.5_1_22:47570871-47571156:+|nuORF	ENST00000380995.5_1_22:47570871-47571156:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	385.57330322265625	3	386.192912	1155.55691	-0.22404	-8.6524E-05	-1.348	-0.00052059	-1.572	-0.00060711	386.528177504712	45.106	0.25333	45.875	45.698	45.951	0.7691					5	4	2	0	0	0	0.78348	1	16788	16788		0.96228	0	1	478640			34312	11363	25109	25282	33384	33384					-0.014649664095941262
LTCISMDRY	9	Unmodified	_LTCISMDRY_					0	0	0		ENSG00000112486|ENST00000341935|CCR6	ENSG00000112486|ENST00000341935|CCR6	ENSG00000112486|ENST00000341935|CCR6	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6868896484375	2	551.257002	1100.49945	-1.1189	-0.0006168	-0.89558	-0.0004937	-2.0145	-0.0011105	551.256845901464	57.346	1.218	58.095	57.865	59.083	0.74894					33	23	3	0	0	0	0.58271	1	21650	21650		20.454	8.8133	1	2113300			34313	3089	25110	25283	33385	33385					-0.04677853405814858
LTCKMSLPPE	10	Unmodified	_LTCKMSLPPE_					0	0	0			REV__nc|ENSG00000140563|Q6DN12-4|MCTP2	REV__nc|ENSG00000140563|Q6DN12-4|MCTP2	MULTI-SECPEP	A375_MHC_IP_R1	1	560.1830444335938	2	559.782853	1117.55115	-0.80515	-0.00045071	1.679	0.00093985	0.8738	0.00048914	559.7834681496915	137.31	0.20726	137.31	137.18	137.39	0					6	3	2	0	0	0	0.93194	1	52881	52881		2.9952	0	1	1380000	+		34314	27262	25111	25284	33386	33386					-0.002921097119269689
LTCKMSLPPE	10	Unmodified	_LTCKMSLPPE_					0	0	0			REV__nc|ENSG00000140563|Q6DN12-4|MCTP2	REV__nc|ENSG00000140563|Q6DN12-4|MCTP2	MULTI-MATCH	A375_MHC_IP_R2	2		2	559.782853	1117.55115	-0.48249	-0.00027009	1.0568	0.00059156	0.57427	0.00032147	559.7831208340939	137.19	0.15411	137.27	137.2	137.35	0.083969	-0.016282	-0.00038985	NaN	2.9952	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	926070	+		34315	27262	25111	25284							-0.002921097119269689
LTCRVSSGVYE	11	Unmodified	_LTCRVSSGVYE_					0	0	0		ENST00000465821.5_1_9:130705473-130705584:-|nuORF	ENST00000465821.5_1_9:130705473-130705584:-|nuORF	ENST00000465821.5_1_9:130705473-130705584:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	607.6953735351562	2	607.297713	1212.58087	-0.32233	-0.00019575	-1.6879	-0.001025	-2.0102	-0.0012208	607.2960914755837	75.08	0.60765	75.08	74.754	75.362	0					22	11	3	0	0	0	0.90673	1	27425	27425		18.373	2.224	1	2966700			34316	12249	25112	25285	33387	33387					-0.01691454442197937
LTCVPFSATV	10	Unmodified	_LTCVPFSATV_					0	0	0			REV__ENST00000564440.5_1_15:72491534-72491750:-|nuORF	REV__ENST00000564440.5_1_15:72491534-72491750:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	519.181640625	2	519.270435	1036.52632	-0.73483	-0.00038157	0.056709	2.9447E-05	-0.67812	-0.00035213	519.7718060912829	96.493	0.80991	97.248	96.709	97.519	0.75586					36	15	4	0	0	0	0.91909	1	36531	36531		1.1933	0	1	2712200	+		34317	26217	25113	25286	33388	33388					0.009515784770201208
LTDADFVSSSE	11	Unmodified	_LTDADFVSSSE_					0	0	0			REV__ENSG00000117000|ENST00000372771|RLF	REV__ENSG00000117000|ENST00000372771|RLF	MSMS	A375_MHC_IP_R2	2	585.70751953125	2	585.761683	1169.50881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.83	1	108.58	108.08	109.08	0.75436								0	0	0	0.15377	1	40730	40730		18.146	2.2992	1		+		34318	17988	25114	25287	33389	33389					-0.06916090314939538
LTDAEERSFLF	11	Unmodified	_LTDAEERSFLF_					0	0	0			REV__nc|ENSG00000002822|Q9Y6D9-3|MAD1L1	REV__nc|ENSG00000002822|Q9Y6D9-3|MAD1L1	MULTI-MSMS	A375_MHC_IP_R2	2	443.6224365234375	3	443.22247	1326.64558	-0.32085	-0.00014221	-1.8571	-0.00082309	-2.1779	-0.0009653	443.2223890549267	44.359	0.55712	45.128	44.782	45.34	0.7691					28	10	4	0	0	0	0.70017	1	16561	16561		15.538	3.9071	1	4791800	+		34319	16090	25115	25288	33390	33390					-0.004675563645832881
LTDAGQRASL	10	Unmodified	_LTDAGQRASL_					0	0	0			REV__ENST00000495589.5_1_1:155181271-155183486:+|nuORF	REV__ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MSMS	A375_MHC_IP_R1	1	516.1821899414062	2	516.277638	1030.54072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.871	1	59.871	59.371	60.371	0								0	0	0	0.14555	1	21546	21546		26.268	3.5319	1		+		34320	21199	25116	25289	33391	33391					0.026673669495039576
LTDAQQQFSVK	11	Unmodified	_LTDAQQQFSVK_					0	0	0		ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	421.6551818847656	3	422.222582	1263.64592	-0.3239	-0.00013676	-0.042771	-1.8059E-05	-0.36667	-0.00015482	422.2225596783666	54.586	0.40534	55.337	55.118	55.523	0.75075					15	7	3	0	0	0	0.90673	1	20670	20670		14.838	12.585	1	1446400			34321	192	25117	25290	33392	33392					0.02463863355274043
LTDAYFKKK	9	Unmodified	_LTDAYFKKK_					0	0	0		ENSG00000089009|ENST00000202773|RPL6;ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENST00000553205.1_1_12:112843569-112844143:-|nuORF;ENST00000456481.1_1_7:137407104-137407545:+|nuORF	ENSG00000089009|ENST00000202773|RPL6	ENSG00000089009|ENST00000202773|RPL6	MULTI-MSMS	A375_MHC_IP_R2	2	558.3878784179688	2	557.318774	1112.623	-0.68947	-0.00038426	0.08998	5.0148E-05	-0.59949	-0.00033411	557.3187953555699	88.334	1.4681	89.066	88.418	89.886	0.7318					79	28	4	0	0	0	0.60101	1	33676	33676		14.838	0.93222	1	10889000			34322	1907	25118	25291	33393	33393					0.07118889028470221
LTDDDLLRY	9	Unmodified	_LTDDDLLRY_					0	0	0		ENSG00000114480|ENST00000429644|GBE1;ENST00000484687.1_1_3:81584326-81627079:-|nuORF	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	A375_MHC_IP_R2	2	562.684814453125	2	562.285128	1122.5557	-0.56151	-0.00031573	0.22638	0.00012729	-0.33513	-0.00018844	562.2852564402738	73.944	1.3237	74.682	74.348	75.671	0.73751					72	25	5	0	0	0	0.0018976	3	28029	28029;28249;28348		145.13	85.056	1	66224000			34323	3223	25119	25292	33394;33395;33396	33394					-0.0006718597312556085
LTDDEAWNGF	10	Unmodified	_LTDDEAWNGF_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MULTI-MSMS	A375_MHC_IP_R1	1	584.6504516601562	2	584.251286	1166.48802	-0.013625	-7.9603E-06	-0.69221	-0.00040443	-0.70584	-0.00041239	584.2507717428681	111.84	1.0704	111.84	111.41	112.48	0					51	20	4	0	0	0	0.6806	1	40930	40930		14.838	0.93222	1	15890000			34324	4134	25120	25293	33397	33397					-0.08856635903953247
LTDDGNKWLY	10	Unmodified	_LTDDGNKWLY_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000466987.1_1_3:184021130-184021370:+|nuORF;ENST00000460628.1_1_3:184020551-184021585:+|nuORF	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-MSMS	A375_MHC_IP_R1	1	613.1983642578125	2	612.798403	1223.58225	-0.68501	-0.00041977	-0.10769	-6.5991E-05	-0.79269	-0.00048576	612.7986218340184	68.185	2.5362	68.185	67.804	70.341	0					140	49	8	0	0	0	3.0522E-05	2	24854	24800;24854		163.69	71.033	1	284620000			34325	7937	25121	25294	33398;33399	33399					-0.020594970817910507
LTDDGNKWLY	10	Unmodified	_LTDDGNKWLY_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000466987.1_1_3:184021130-184021370:+|nuORF;ENST00000460628.1_1_3:184020551-184021585:+|nuORF	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-SECPEP	A375_MHC_IP_R1	1	612.6677856445312	2	612.798403	1223.58225	-0.23978	-0.00014694	0.010328	6.329E-06	-0.22945	-0.00014061	612.7982408351502	70.402	0.97212	70.402	70.085	71.057	0					25	18	2	0	0	0	0.81654	1	25760	25760		20.581	6.1756	1	1074200			34326	7937	25121	25294	33400	33400					-0.020594970817910507
LTDDGNKWLY	10	Unmodified	_LTDDGNKWLY_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000466987.1_1_3:184021130-184021370:+|nuORF;ENST00000460628.1_1_3:184020551-184021585:+|nuORF	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-MSMS	A375_MHC_IP_R2	2	613.1976928710938	2	612.798403	1223.58225	-0.52109	-0.00031932	-0.16699	-0.00010233	-0.68809	-0.00042166	612.7983019796676	67.546	2.2829	68.282	67.801	70.084	0.73631					99	44	4	0	0	0	4.0434E-07	3	25494	25494;25663;25713		203.64	77.073	1	293900000			34327	7937	25121	25294	33401;33402;33403	33401					-0.020594970817910507
LTDDGNKWLY	10	Unmodified	_LTDDGNKWLY_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000466987.1_1_3:184021130-184021370:+|nuORF;ENST00000460628.1_1_3:184020551-184021585:+|nuORF	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-MATCH	A375_MHC_IP_R2	2		2	612.798403	1223.58225	-0.45644	-0.0002797	-0.71902	-0.00044061	-1.1755	-0.00072032	612.7981705347602	69.454	0.61087	70.188	70.031	70.642	0.73421	-0.10686	-0.00045679	NaN	32.037	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1436000			34328	7937	25121	25294							-0.020594970817910507
LTDDGRVFLW	10	Unmodified	_LTDDGRVFLW_					0	0	0		nc|ENSG00000180198|P18754-2|RCC1;ENSG00000180198|ENST00000683442|RCC1;ENST00000429051.1_1_1:28858469-28862138:+|nuORF	nc|ENSG00000180198|P18754-2|RCC1	nc|ENSG00000180198|P18754-2|RCC1	MULTI-SECPEP	A375_MHC_IP_R2	2	610.6983642578125	2	611.316763	1220.61897	-0.50267	-0.00030729	-2.645	-0.0016169	-3.1477	-0.0019242	611.3159325241495	105.73	0.81579	106.49	105.97	106.78	0.75977					29	15	3	0	0	0	0.75968	1	40012	40012		30.703	8.0454	1	1392700			34329	8281	25122	25295	33404	33404					0.017487995347664764
LTDDKLSQY	9	Unmodified	_LTDDKLSQY_					0	0	0		ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	MULTI-SECPEP	A375_MHC_IP_R1	1	542.1715087890625	2	541.771854	1081.52915	-0.54747	-0.0002966	-0.03167	-1.7158E-05	-0.57914	-0.00031376	541.7718057116622	36.014	0.66162	36.014	35.727	36.389	0					41	12	4	0	0	0	0.038931	1	11986	11986		100.09	37.518	1	50505000			34330	3743	25123	25296	33405	33405					-0.008348748644721127
LTDDKLSQY	9	Unmodified	_LTDDKLSQY_					0	0	0		ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	MULTI-MSMS	A375_MHC_IP_R2	2	542.171630859375	2	541.771854	1081.52915	-1.0727	-0.00058115	0.27953	0.00015144	-0.79316	-0.00042971	541.7719817076206	35.343	0.80969	36.107	35.829	36.638	0.76338					32	15	3	0	0	0	0.0074709	1	12772	12772		187.3	91.012	1	55430000			34331	3743	25123	25296	33406	33406					-0.008348748644721127
LTDDPNLQI	9	Unmodified	_LTDDPNLQI_					0	0	0		ENSG00000198283|ENST00000360374|OR5B21	ENSG00000198283|ENST00000360374|OR5B21	ENSG00000198283|ENST00000360374|OR5B21	MSMS	A375_MHC_IP_R2	2	514.7007446289062	2	514.766571	1027.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.794	1	82.537	82.037	83.037	0.74293								0	0	0	0.15486	1	31070	31070		11.64	0	1				34332	9250	25124	25297	33407	33407					0.005931424811024044
LTDDSYIAPPH	11	Unmodified	_LTDDSYIAPPH_					0	0	0			REV__ENST00000430515.1_1_3:194476389-194476791:+|nuORF	REV__ENST00000430515.1_1_3:194476389-194476791:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	615.1949462890625	2	614.79586	1227.57717	-0.91788	-0.00056431	0.1509	9.2775E-05	-0.76697	-0.00047153	614.7959479706707	58.479	0.56158	59.228	58.98	59.542	0.74894					16	10	2	0	0	0	0.55166	1	22144	22144		38.176	10.547	1	2220800	+		34333	24695	25125	25298	33408	33408					-0.02751800944452043
LTDEEILSKY	10	Unmodified	_LTDEEILSKY_					0	0	0		ENSG00000103528|ENST00000355377|SYT17	ENSG00000103528|ENST00000355377|SYT17	ENSG00000103528|ENST00000355377|SYT17	MULTI-SECPEP	A375_MHC_IP_R2	2	404.95526123046875	3	404.211571	1209.61288	-0.17928	-7.2468E-05	1.1994	0.00048481	1.0201	0.00041235	404.2118404565379	35.627	0.50616	36.39	36.132	36.638	0.76338					12	9	2	0	0	0	0.92957	1	13000	13000		1.5923	0	1	1388800			34334	2460	25126	25299	33409	33409					0.016462365126017175
LTDEGYEHFY	10	Unmodified	_LTDEGYEHFY_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	A375_MHC_IP_R1	1	637.6717529296875	2	637.272218	1272.52988	-0.73737	-0.00046991	0.01371	8.7373E-06	-0.72366	-0.00046117	637.2721436411625	61.297	0.45925	61.297	61.024	61.483	0					17	8	3	0	0	0	0.0095045	1	22101	22101		128.37	100.74	1	2641700			34335	1676	25127	25300	33410	33410					-0.09548080215427035
LTDEGYEHFY	10	Unmodified	_LTDEGYEHFY_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-SECPEP	A375_MHC_IP_R2	2	637.6712646484375	2	637.272218	1272.52988	-1.0724	-0.00068342	-0.067377	-4.2938E-05	-1.1398	-0.00072635	637.2719966661264	60.717	0.35515	61.462	61.211	61.566	0.74503					12	6	2	0	0	0	0.24499	1	23004	23004		52.268	46.063	1	2842200			34336	1676	25127	25300	33411	33411					-0.09548080215427035
LTDEHRKGY	9	Unmodified	_LTDEHRKGY_					0	0	0			REV__ENSG00000198734|ENST00000367797|F5;REV__CON__Q28107	REV__ENSG00000198734|ENST00000367797|F5	MULTI-SECPEP	A375_MHC_IP_R2	2	560.1827392578125	2	559.783087	1117.55162	-1.068	-0.00059786	0.071673	4.0122E-05	-0.99634	-0.00055774	559.7832021520975	59.455	0.65666	60.202	59.896	60.553	0.74714					21	12	2	0	0	0	0.58271	1	22462	22462		10.074	0	1	3985400	+	+	34337	22406;15875	25128	25301	33412	33412					-0.0024523067620521033
LTDEQLLY	8	Unmodified	_LTDEQLLY_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	A375_MHC_IP_R1	1	498.1575622558594	2	497.758215	993.501877	-0.58324	-0.00029031	-0.47263	-0.00023526	-1.0559	-0.00052557	497.7580232247281	84.551	0.71301	84.551	84.191	84.904	0					19	13	2	0	0	0	0.23604	1	30956	30956		64.236	6.765	1	1711700			34338	9113	25129	25302	33413	33413					0.00486641595148285
LTDEQLLY	8	Unmodified	_LTDEQLLY_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-SECPEP	A375_MHC_IP_R2	2	498.15777587890625	2	497.758215	993.501877	-0.44836	-0.00022317	-0.11362	-5.6557E-05	-0.56198	-0.00027973	497.7580200781841	83.822	0.76823	84.562	84.049	84.817	0.73962					26	14	3	0	0	0	0.40488	1	31836	31836		57.471	0	1	2804600			34339	9113	25129	25302	33414	33414					0.00486641595148285
LTDFADREFRG	11	Unmodified	_LTDFADREFRG_					0	0	0			REV__nc|ENSG00000188677|Q9HBI1-3|PARVB	REV__nc|ENSG00000188677|Q9HBI1-3|PARVB	MULTI-MSMS	A375_MHC_IP_R2	2	664.2242431640625	2	663.825483	1325.63641	-0.88589	-0.00058808	-0.71118	-0.0004721	-1.5971	-0.0010602	663.8250409719516	39.724	0.40702	40.499	40.32	40.727	0.77451					18	7	3	0	0	0	0.43152	1	14693	14693		36.506	0.37917	1	7092600	+		34340	22106	25130	25303	33415	33415					-0.013379049302557178
LTDFADREFRG	11	Unmodified	_LTDFADREFRG_					0	0	0			REV__nc|ENSG00000188677|Q9HBI1-3|PARVB	REV__nc|ENSG00000188677|Q9HBI1-3|PARVB	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	663.825483	1325.63641	-0.88589	-0.00058808	-0.71118	-0.0004721	-1.5971	-0.0010602	663.8250409719516	39.724	0.40702	40.499	40.32	40.727	0.77451	0.079897	5.5765E-05	NaN	36.506	18	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7092600	+		34341	22106	25130	25303							-0.013379049302557178
LTDFDIRFY	9	Unmodified	_LTDFDIRFY_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENST00000562367.1_1_16:58208309-58230657:-|nuORF	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-SECPEP	A375_MHC_IP_R1	1	595.6974487304688	2	595.298039	1188.58152	-0.13008	-7.7439E-05	0.17416	0.00010368	0.044079	2.624E-05	595.2980643250935	108.53	1.268	108.53	108.15	109.42	0					52	24	4	0	0	0	0.11849	1	39761	39761		70.332	26.56	1	16244000			34342	1500	25131	25304	33416	33416					-0.00522291730840152
LTDFDIRFY	9	Unmodified	_LTDFDIRFY_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENST00000562367.1_1_16:58208309-58230657:-|nuORF	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-SECPEP	A375_MHC_IP_R2	2	595.69775390625	2	595.298039	1188.58152	-0.59362	-0.00035338	0.23626	0.00014064	-0.35737	-0.00021274	595.2981966811669	107.73	1.175	108.48	108.05	109.22	0.75436					46	22	4	0	0	0	0.090157	1	40656	40656		67.838	25.883	1	15805000			34343	1500	25131	25304	33417	33417					-0.00522291730840152
LTDFENSAY	9	Unmodified	_LTDFENSAY_					0	0	0		ENSG00000001084|ENST00000650454|GCLC	ENSG00000001084|ENST00000650454|GCLC	ENSG00000001084|ENST00000650454|GCLC	MULTI-SECPEP	A375_MHC_IP_R1	1	530.6347045898438	2	530.235104	1058.45566	-0.54612	-0.00028957	0.017935	9.5098E-06	-0.52819	-0.00028006	530.2349010645343	63.648	0.76469	63.648	63.326	64.09	0					15	14	2	0	0	0	0.4261	1	23002	23002		37.974	23.136	1	2282300			34344	842	25132	25305	33418	33418					-0.0712342330696174
LTDFENSAY	9	Unmodified	_LTDFENSAY_					0	0	0		ENSG00000001084|ENST00000650454|GCLC	ENSG00000001084|ENST00000650454|GCLC	ENSG00000001084|ENST00000650454|GCLC	MULTI-SECPEP	A375_MHC_IP_R1	1	1058.802490234375	1	1059.46293	1058.45566	0.16827	0.00017827	0.35421	0.00037527	0.52248	0.00055355	1059.4632582825866	63.606	0.4096	63.606	63.377	63.786	0					12	7	2	0	0	0	0.53748	1	23015	23015		30.637	8.8899	1	2316400			34345	842	25132	25305	33419	33419					-0.0712342330696174
LTDFENSAY	9	Unmodified	_LTDFENSAY_					0	0	0		ENSG00000001084|ENST00000650454|GCLC	ENSG00000001084|ENST00000650454|GCLC	ENSG00000001084|ENST00000650454|GCLC	MULTI-SECPEP	A375_MHC_IP_R2	2	529.6724853515625	2	530.235104	1058.45566	-0.56188	-0.00029793	-0.056004	-2.9695E-05	-0.61789	-0.00032762	530.2350410971494	63.054	0.50541	63.796	63.484	63.989	0.74263					15	9	2	0	0	0	0.53748	1	23916	23916		30.637	14.487	1	2205400			34346	842	25132	25305	33420	33420					-0.0712342330696174
LTDFENSAY	9	Unmodified	_LTDFENSAY_					0	0	0		ENSG00000001084|ENST00000650454|GCLC	ENSG00000001084|ENST00000650454|GCLC	ENSG00000001084|ENST00000650454|GCLC	MULTI-MATCH	A375_MHC_IP_R2	2		1	1059.46293	1058.45566	0.10697	0.00011333	0.33675	0.00035678	0.44373	0.00047011	1059.4630006075981	63.071	0.35437	63.813	63.584	63.938	0.74263	0.1034	-9.6594E-06	NaN	30.637	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1862800			34347	842	25132	25305							-0.0712342330696174
LTDFIQKY	8	Unmodified	_LTDFIQKY_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000565738.1_1_16:75674022-75675473:-|nuORF	ENSG00000065427|ENST00000302445|KARS1;ENST00000565738.1_1_16:75674022-75675473:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	MULTI-MSMS	A375_MHC_IP_R1	1	514.6761474609375	2	514.276575	1026.5386	-0.47081	-0.00024213	-0.39521	-0.00020325	-0.86602	-0.00044537	514.2762771829149	61.917	0.56207	61.917	61.585	62.148	0					33	10	4	0	0	0	1.8552E-08	1	22324	22324		214.14	57.982	1	23878000			34348	1382;13550	25133	25306	33421	33421					0.026389382117031346
LTDFIQKY	8	Unmodified	_LTDFIQKY_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000565738.1_1_16:75674022-75675473:-|nuORF	ENSG00000065427|ENST00000302445|KARS1;ENST00000565738.1_1_16:75674022-75675473:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	MULTI-MSMS	A375_MHC_IP_R2	2	514.6759643554688	2	514.276575	1026.5386	-1.0709	-0.00055073	-0.14065	-7.2333E-05	-1.2115	-0.00062306	514.2763881552269	61.147	0.90697	61.892	61.566	62.473	0.74503					45	17	4	0	0	0	2.9158E-06	1	23133	23133		197.17	55.341	1	24624000			34349	1382;13550	25133	25306	33422	33422					0.026389382117031346
LTDFIREEY	9	Unmodified	_LTDFIREEY_					0	0	0		nc|ENSG00000185418|A2RTX5-2|TARS3;ENSG00000185418|ENST00000335968|TARS3	nc|ENSG00000185418|A2RTX5-2|TARS3	nc|ENSG00000185418|A2RTX5-2|TARS3	MULTI-MSMS	A375_MHC_IP_R1	1	593.69287109375	2	593.292953	1184.57135	0.10868	6.4477E-05	-0.046437	-2.7551E-05	0.06224	3.6927E-05	593.2928979019039	69.326	1.3666	69.326	68.819	70.185	0					74	26	5	0	0	0	0.058226	1	25302	25302		61.09	32.008	1	88313000			34350	8664	25134	25307	33423	33423					-0.013548994561006111
LTDFIREEY	9	Unmodified	_LTDFIREEY_					0	0	0		nc|ENSG00000185418|A2RTX5-2|TARS3;ENSG00000185418|ENST00000335968|TARS3	nc|ENSG00000185418|A2RTX5-2|TARS3	nc|ENSG00000185418|A2RTX5-2|TARS3	MULTI-MSMS	A375_MHC_IP_R2	2	593.6925659179688	2	593.292953	1184.57135	-0.45829	-0.0002719	0.23002	0.00013647	-0.22827	-0.00013543	593.2930585528519	68.692	1.5736	69.427	69.018	70.592	0.73511					87	30	5	0	0	0	0.010044	2	25959	25959;26181		125.04	79.017	1	92336000			34351	8664	25134	25307	33424;33425	33424					-0.013548994561006111
LTDFQKAVY	9	Unmodified	_LTDFQKAVY_					0	0	0		ENSG00000182150|ENST00000653738|ERCC6L2;nc|ENSG00000182150|Q5T890-2|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	MULTI-SECPEP	A375_MHC_IP_R2	2	542.5375366210938	2	542.787307	1083.56006	-1.2908	-0.00070064	0.40578	0.00022025	-0.88505	-0.00048039	542.787508938567	52.605	0.65707	53.357	53.032	53.69	0.75225					28	12	3	0	0	0	0.078412	1	19811	19811		90.135	48.295	1	9435100			34352	8378	25135	25308	33426	33426					0.02162323240418118
LTDGSLTLTF	10	Unmodified	_LTDGSLTLTF_					0	0	0			REV__ENST00000444995.7_1_22:25771803-25801278:-|nuORF	REV__ENST00000444995.7_1_22:25771803-25801278:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	534.6841430664062	2	534.284597	1066.55464	-0.54683	-0.00029216	0.34351	0.00018353	-0.20332	-0.00010863	534.2850149650166	40.484	0.30541	40.484	40.355	40.66	0					9	5	2	0	0	0	0.27864	1	13953	13953		41.84	10.571	1	2055000	+		34353	24836	25136	25309	33427	33427					0.02402599657943938
LTDGSLTLTF	10	Unmodified	_LTDGSLTLTF_					0	0	0			REV__ENST00000444995.7_1_22:25771803-25801278:-|nuORF	REV__ENST00000444995.7_1_22:25771803-25801278:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	534.284597	1066.55464	-0.81572	-0.00043583	0.36503	0.00019503	-0.45069	-0.00024079	534.2848903380404	39.743	0.35641	40.517	40.32	40.676	0.77451	0.016741	6.6427E-06	NaN	41.84	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1686700	+		34354	24836	25136	25309							0.02402599657943938
LTDGSYFGAW	10	Unmodified	_LTDGSYFGAW_					0	0	0		ENST00000496230.5_1_1:155254296-155257077:+|nuORF	ENST00000496230.5_1_1:155254296-155257077:+|nuORF	ENST00000496230.5_1_1:155254296-155257077:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1115.8701171875	1	1116.49965	1115.49238	0.30617	0.00034184	0.65388	0.00073005	0.96005	0.0010719	1116.501237144857	140.56	0.25217	140.6	140.45	140.7	0.04216					6	4	2	0	0	0	0.9269	1	55030	55030		10.824	2.0785	1	560120			34355	12721	25137	25310	33428	33428					-0.0607512669037078
LTDGVSQIHY	10	Unmodified	_LTDGVSQIHY_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	A375_MHC_IP_R1	1	567.1849975585938	2	566.785296	1131.55604	-0.24724	-0.00014013	3.6857	0.002089	3.4385	0.0019489	566.785510360873	37.251	0.55826	37.251	36.895	37.454	0					25	10	4	0	0	0	0.44858	1	12542	12542		31.268	0	1	3353300			34356	3357	25138	25311	33429	33429					-0.004477662532735849
LTDIDTLHE	9	Unmodified	_LTDIDTLHE_					0	0	0		ENST00000473857.5_1_20:36384780-36460672:+|nuORF;nc|ENSG00000132792|Q8WYA6-4|CTNNBL1;ENSG00000132792|ENST00000361383|CTNNBL1	ENST00000473857.5_1_20:36384780-36460672:+|nuORF	ENST00000473857.5_1_20:36384780-36460672:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	529.1635131835938	2	528.764029	1055.5135	-0.57508	-0.00030408	-0.85093	-0.00044994	-1.426	-0.00075403	528.763432926056	31.128	0.50909	31.846	31.618	32.128	0.71857					15	9	2	0	0	0	0.27715	1	10981	10981		32.305	13.932	1	4382600			34357	4449	25139	25312	33430	33430					-0.0120316138149974
LTDIDTLHE	9	Unmodified	_LTDIDTLHE_					0	0	0		ENST00000473857.5_1_20:36384780-36460672:+|nuORF;nc|ENSG00000132792|Q8WYA6-4|CTNNBL1;ENSG00000132792|ENST00000361383|CTNNBL1	ENST00000473857.5_1_20:36384780-36460672:+|nuORF	ENST00000473857.5_1_20:36384780-36460672:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	528.764029	1055.5135	-0.51263	-0.00027106	-0.36297	-0.00019192	-0.87559	-0.00046298	528.7638473383361	31.818	0.51056	31.818	31.565	32.075	0	-0.014059	0.00020656	NaN	32.305	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3721700			34358	4449	25139	25312							-0.0120316138149974
LTDIFQHDTY	10	Unmodified	_LTDIFQHDTY_					0	0	0		ENSG00000164366|ENST00000296824|CCDC127	ENSG00000164366|ENST00000296824|CCDC127	ENSG00000164366|ENST00000296824|CCDC127	MULTI-MSMS	A375_MHC_IP_R1	1	627.1961669921875	2	626.79586	1251.57717	-0.4772	-0.00029911	-0.23955	-0.00015015	-0.71675	-0.00044926	626.7958213165346	72.77	1.5685	72.77	71.615	73.184	0					53	30	3	0	0	0	3.2789E-05	1	26455	26455		174.48	122.85	1	15433000			34359	6834	25140	25313	33431	33431					-0.038558009444159325
LTDIFQHDTY	10	Unmodified	_LTDIFQHDTY_					0	0	0		ENSG00000164366|ENST00000296824|CCDC127	ENSG00000164366|ENST00000296824|CCDC127	ENSG00000164366|ENST00000296824|CCDC127	MULTI-MSMS	A375_MHC_IP_R2	2	627.195068359375	2	626.79586	1251.57717	-1.0516	-0.00065912	-0.29644	-0.00018581	-1.348	-0.00084493	626.7957908753519	72.06	1.6201	72.795	71.605	73.225	0.73421					42	31	2	0	0	0	3.2789E-05	2	27327	27327;27468		174.48	126.73	1	17692000			34360	6834	25140	25313	33432;33433	33432					-0.038558009444159325
LTDIHGNVLQY	11	Unmodified	_LTDIHGNVLQY_					0	0	0		nc|ENSG00000162813|O95861-3|BPNT1;nc|ENSG00000162813|O95861-4|BPNT1;ENSG00000162813|ENST00000322067|BPNT1;nc|ENSG00000162813|O95861-2|BPNT1	nc|ENSG00000162813|O95861-3|BPNT1	nc|ENSG00000162813|O95861-3|BPNT1	MULTI-SECPEP	A375_MHC_IP_R1	1	637.2330932617188	2	636.832777	1271.651	-0.76544	-0.00048745	1.7177	0.0010939	0.95231	0.00060646	636.8336503400709	64.969	0.50638	64.969	64.75	65.257	0					13	9	2	0	0	0	0.14752	1	23543	23543		69.338	27.383	1	1668700			34361	6598	25141	25314	33434	33434					0.026041672179189845
LTDIHGNVLQY	11	Unmodified	_LTDIHGNVLQY_					0	0	0		nc|ENSG00000162813|O95861-3|BPNT1;nc|ENSG00000162813|O95861-4|BPNT1;ENSG00000162813|ENST00000322067|BPNT1;nc|ENSG00000162813|O95861-2|BPNT1	nc|ENSG00000162813|O95861-3|BPNT1	nc|ENSG00000162813|O95861-3|BPNT1	MULTI-SECPEP	A375_MHC_IP_R2	2	637.2328491210938	2	636.832777	1271.651	-0.7003	-0.00044598	1.2134	0.00077272	0.51308	0.00032675	636.8338374279392	64.272	0.66207	65.012	64.699	65.361	0.74022					17	12	3	0	0	0	0.33234	1	24365	24365		57.249	7.6948	1	1888100			34362	6598	25141	25314	33435	33435					0.026041672179189845
LTDIKLGKY	9	Unmodified	_LTDIKLGKY_					0	0	0		ENSG00000165392|ENST00000298139|WRN	ENSG00000165392|ENST00000298139|WRN	ENSG00000165392|ENST00000298139|WRN	MULTI-SECPEP	A375_MHC_IP_R1	1	525.15576171875	2	525.813325	1049.6121	-0.34454	-0.00018117	-1.1779	-0.00061934	-1.5224	-0.00080051	525.8130356120249	43.376	0.2534	43.376	43.249	43.502	0					7	4	2	0	0	0	0.59098	1	15071	15071		27.629	6.0918	1	1095900			34363	6947	25142	25315	33436	33436					0.089274866542155
LTDITKGVQY	10	Unmodified	_LTDITKGVQY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	A375_MHC_IP_R1	1	569.1505737304688	2	569.311146	1136.60774	-0.49363	-0.00028103	-0.014852	-8.4552E-06	-0.50848	-0.00028948	569.3110365856659	53.022	1.1156	53.022	52.49	53.605	0					70	21	5	0	0	0	3.1002E-05	1	18859	18859		187.14	80.043	1	200330000			34364	7207	25143	25316	33437	33437					0.04489977440630355
LTDITKGVQY	10	Unmodified	_LTDITKGVQY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	A375_MHC_IP_R2	2	569.7107543945312	2	569.311146	1136.60774	-0.74771	-0.00042568	-0.061473	-3.4998E-05	-0.80919	-0.00046068	569.3110234521295	52.406	0.90884	53.159	52.831	53.74	0.75225					67	17	5	0	0	0	3.3044E-05	1	19694	19694		192.32	63.389	1	223300000			34365	7207	25143	25316	33438	33438					0.04489977440630355
LTDKDDYHGY	10	Unmodified	_LTDKDDYHGY_					0	0	0			REV__C5AR1|p.D10N|1|0.3|ENSG00000197405|chr19:47319805-47319805|G/A|missense_variant	REV__C5AR1|p.D10N|1|0.3|ENSG00000197405|chr19:47319805-47319805|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	613.6902465820312	2	613.769842	1225.52513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.449	1	73.185	72.685	73.685	0.73541								0	0	0	0.14925	1	27493	27493		19.257	6.2145	1		+		34366	15543	25144	25317	33439	33439					-0.07860964358178535
LTDKDTGVTRY	11	Unmodified	_LTDKDTGVTRY_					0	0	0		nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	MULTI-SECPEP	A375_MHC_IP_R1	1	423.95416259765625	3	423.55422	1267.64083	-0.32964	-0.00013962	-0.034498	-1.4612E-05	-0.36414	-0.00015423	423.55417480750964	23.863	0.25367	23.863	23.737	23.991	0					9	4	3	0	0	0	0.16379	1	6654	6654		59.935	35.707	1	8764200			34367	2935	25145	25318	33440	33440					0.017715594926585254
LTDKDTGVTRY	11	Unmodified	_LTDKDTGVTRY_					0	0	0		nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	MULTI-SECPEP	A375_MHC_IP_R2	2	423.95416259765625	3	423.55422	1267.64083	-0.47467	-0.00020105	0.0037297	1.5798E-06	-0.47094	-0.00019947	423.554235277818	23.172	0.40747	23.802	23.521	23.928	0.63014					12	7	2	0	0	0	0.13337	1	7419	7419		70.345	46.116	1	6770600			34368	2935	25145	25318	33441	33441					0.017715594926585254
LTDKKNYIF	9	Unmodified	_LTDKKNYIF_					0	0	0		tr|U7STY8|U7STY8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01035PE=4SV=1	tr|U7STY8|U7STY8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01035PE=4SV=1	tr|U7STY8|U7STY8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01035PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	571.5679321289062	2	571.316232	1140.61791	-0.20575	-0.00011755	0.71654	0.00040937	0.51079	0.00029182	571.318579425616	92.202	0.25346	92.941	92.734	92.987	0.73902					5	4	2	0	0	0	0.76827	1	35058	35058		3.5965	0	1	435710			34369	29728	25146	25319	33442	33442					0.05322585165822602
LTDLEREY	8	Unmodified	_LTDLEREY_					0	0	0			REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	MULTI-SECPEP	A375_MHC_IP_R1	1	520.1588134765625	2	519.758746	1037.50294	-0.49284	-0.00025616	0.96345	0.00050076	0.47061	0.00024461	519.7588058553439	31.783	0.6651	31.783	31.514	32.179	0					29	12	4	0	0	0	0.8957	1	10185	10185		21.747	0	1	10508000	+		34370	27175	25147	25320	33443	33443					-0.014311440359506378
LTDLIFEQF	9	Unmodified	_LTDLIFEQF_					0	0	0			REV__ENSG00000100218|ENST00000216036|RSPH14	REV__ENSG00000100218|ENST00000216036|RSPH14	MULTI-MSMS	A375_MHC_IP_R1	1	563.6952514648438	2	563.294965	1124.57538	-0.44432	-0.00025028	0.18475	0.00010407	-0.25957	-0.00014622	563.295070322811	99.372	0.65785	99.372	99.015	99.673	0					28	12	3	0	0	0	0.29981	1	36468	36468		30.637	2.4633	1	4396400	+		34371	17059	25148	25321	33444	33444					0.018071900376071426
LTDLIFEQF	9	Unmodified	_LTDLIFEQF_					0	0	0			REV__ENSG00000100218|ENST00000216036|RSPH14	REV__ENSG00000100218|ENST00000216036|RSPH14	MULTI-SECPEP	A375_MHC_IP_R1	1	563.1124877929688	2	563.294965	1124.57538	-0.44432	-0.00025028	0.18475	0.00010407	-0.25957	-0.00014622	563.295070322811	99.372	0.65785	99.372	99.015	99.673	0					28	12	3	0	0	0	0.63622	1	36549	36549		26.884	6.0124	1	4396400	+		34372	17059	25148	25321	33445	33445					0.018071900376071426
LTDLLLNTL	9	Unmodified	_LTDLLLNTL_					0	0	0			REV__ENST00000464935.6_1_X:2179666-2184977:-|nuORF	REV__ENST00000464935.6_1_X:2179666-2184977:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	509.36126708984375	2	508.305332	1014.59611	-0.68808	-0.00034975	-0.074566	-3.7902E-05	-0.76264	-0.00038766	508.30516828551765	132.7	0.55875	132.87	132.64	133.2	0.16487					21	10	3	0	0	0	0.51106	1	52233	52233		19.257	4.4187	1	15834000	+		34373	20904	25149	25322	33446	33446					0.08939780417290422
LTDLNQDPN	9	Unmodified	_LTDLNQDPN_					0	0	0		nc|ENSG00000117600|Q7Z2D5-2|PLPPR4;nc|ENSG00000117600|Q7Z2D5-3|PLPPR4;ENSG00000117600|ENST00000370185|PLPPR4;nc|ENSG00000117600|Q7Z2D5|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	MULTI-SECPEP	A375_MHC_IP_R1	1	515.1900634765625	2	515.246003	1028.47745	-0.38783	-0.00019983	-1.0251	-0.00052817	-1.4129	-0.000728	515.7461163401988	43.388	1.1687	43.388	42.841	44.01	0					50	22	4	0	0	0	0.58271	1	14867	14867		14.838	9.5414	1	6043200			34374	3499	25150	25323	33447	33447					-0.035646185583800616
LTDLRLHSGEV	11	Unmodified	_LTDLRLHSGEV_					0	0	0		nc|ENSG00000163026|Q9H6R7-2|WDCP;ENSG00000163026|ENST00000295148|WDCP	nc|ENSG00000163026|Q9H6R7-2|WDCP	nc|ENSG00000163026|Q9H6R7-2|WDCP	MULTI-SECPEP	A375_MHC_IP_R1	1	620.679931640625	2	620.338227	1238.6619	-0.32472	-0.00020144	-1.1537	-0.00071566	-1.4784	-0.00091709	620.3373753885776	72.742	0.45651	72.742	72.575	73.031	0					12	8	2	0	0	0	0.95991	1	26430	26430		8.7454	0	1	1161100			34375	6623	25151	25324	33448	33448					0.05211569592188425
LTDLTNYAE	9	Unmodified	_LTDLTNYAE_					0	0	0		tr|U7SK73|U7SK73_FUSNUV-typeATPsynthasebetachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpBPE=3SV=1	tr|U7SK73|U7SK73_FUSNUV-typeATPsynthasebetachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpBPE=3SV=1	tr|U7SK73|U7SK73_FUSNUV-typeATPsynthasebetachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpBPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	520.650634765625	2	520.250754	1038.48696	-1.1163	-0.00058074	0.35835	0.00018643	-0.75791	-0.00039431	520.25092369904	29.633	0.85925	30.332	30.134	30.993	0.69872					30	16	2	0	0	0	0.41434	1	10387	10387		32.786	10.049	1	3510800			34376	29467	25152	25325	33449	33449					-0.03074850272855656
LTDLVDDNY	9	Unmodified	_LTDLVDDNY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R1	1	534.6473999023438	2	534.248212	1066.48187	-0.67409	-0.00036013	-0.41273	-0.0002205	-1.0868	-0.00058063	534.247909240132	74.194	0.86086	74.194	73.843	74.704	0					47	15	4	0	0	0	0.010171	2	26981	26981;27017		96.111	24.189	1	32707000			34377	7864	25153	25326	33450;33451	33450					-0.04871154135480538
LTDLVDDNY	9	Unmodified	_LTDLVDDNY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R2	2	534.6473388671875	2	534.248212	1066.48187	-0.73675	-0.00039361	-0.35372	-0.00018897	-1.0905	-0.00058258	534.2478915399503	73.626	1.0188	74.361	73.836	74.855	0.73541					57	19	5	0	0	0	0.030038	2	27872	27872;28089		74.929	18.752	1	38168000			34378	7864	25153	25326	33452;33453	33452					-0.04871154135480538
LTDLVDDNYFY	11	Unmodified	_LTDLVDDNYFY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R2	2	690.0852661132812	2	689.314083	1376.61361	-0.68844	-0.00047455	0.52776	0.00036379	-0.16068	-0.00011076	689.8163132333738	121.86	0.40547	122.3	122.08	122.48	0.44488					12	7	2	0	0	0	0.41028	1	46601	46601		38.176	16.639	1	10327000			34379	7864	25154	25327	33454	33454					-0.059629688383893154
LTDLVPGTEY	10	Unmodified	_LTDLVPGTEY_					0	0	0		ENSG00000116147|ENST00000367674|TNR;nc|ENSG00000116147|Q92752-2|TNR;TNR|p.T988Nfs*60|1|0.08|ENSG00000116147|chr1:175359623-175359623|G/-|frameshift_variant;TNR|p.G663R|1|0.09|ENSG00000116147|chr1:175367274-175367274|C/T|missense_variant	ENSG00000116147|ENST00000367674|TNR	ENSG00000116147|ENST00000367674|TNR	MSMS	A375_MHC_IP_R1	1	554.1614990234375	2	554.282054	1106.54956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.088	1	86.088	85.588	86.588	0								0	0	0	0.14862	1	31559	31559		20.454	1.1966	1				34380	3376	25155	25328	33455	33455					0.0005429579534848017
LTDMTLLHY	9	Oxidation (M)	_LTDM(Oxidation (M))TLLHY_		LTDM(1)TLLHY		LTDM(42)TLLHY	0	0	1		nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4;ENST00000491701.1_1_2:29355008-29355161:+|nuORF;ENSG00000105270|ENST00000360535|CLIP3	nc|ENSG00000115295|Q8N3C7-3|CLIP4	nc|ENSG00000115295|Q8N3C7-3|CLIP4	MULTI-MSMS	A375_MHC_IP_R1	1	562.1776123046875	2	561.778625	1121.5427	-0.61468	-0.00034532	-0.5844	-0.00032831	-1.1991	-0.00067362	561.7783815508996	65.794	0.86384	65.794	65.514	66.377	0					26	16	2	0	0	0	0.1478	1	23857	23857		42.095	27.256	1	1240600			34381	3297	25156	25329	33456	33456		159			-0.013213403568897775
LTDMTLLHY	9	Unmodified	_LTDMTLLHY_					0	0	0		nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4;ENST00000491701.1_1_2:29355008-29355161:+|nuORF;ENSG00000105270|ENST00000360535|CLIP3	nc|ENSG00000115295|Q8N3C7-3|CLIP4	nc|ENSG00000115295|Q8N3C7-3|CLIP4	MULTI-SECPEP	A375_MHC_IP_R2	2	554.1806030273438	2	553.781167	1105.54778	-0.62531	-0.00034629	-1.5607	-0.00086428	-2.186	-0.0012106	553.7802551466848	85.341	0.56026	86.077	85.78	86.341	0.73601					15	10	2	0	0	0	0.040439	1	32482	32482		81.613	39.658	1	2111900			34382	3297	25156	25330	33457	33457					-0.0007703649425820913
LTDMWWCPG	9	Unmodified	_LTDMWWCPG_					0	0	0		ENST00000401957.6_1_7:22233026-22233254:-|nuORF	ENST00000401957.6_1_7:22233026-22233254:-|nuORF	ENST00000401957.6_1_7:22233026-22233254:-|nuORF	MSMS	A375_MHC_IP_R1	1	554.6813354492188	2	554.733163	1107.45177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.14	1	86.14	85.64	86.64	0								0	0	0	0.14905	1	31578	31578		23.148	3.7094	1				34383	11562	25157	25331	33458	33458					-0.09765507606016399
LTDNEFKDP	9	Unmodified	_LTDNEFKDP_					0	0	0		ENSG00000196689|ENST00000572705|TRPV1;ENST00000572919.1_3_17:3488830-3495572:-|nuORF	ENSG00000196689|ENST00000572705|TRPV1	ENSG00000196689|ENST00000572705|TRPV1	MULTI-MSMS	A375_MHC_IP_R1	1	540.1557006835938	2	539.756204	1077.49785	-0.9854	-0.00053188	0.40177	0.00021686	-0.58364	-0.00031502	539.7564779672764	30.271	0.50399	30.271	30.099	30.603	0					15	9	2	0	0	0	0.2487	1	9617	9617		34.402	6.7729	1	4174200			34384	9076	25158	25332	33459	33459					-0.03779447898568833
LTDNEFKDP	9	Unmodified	_LTDNEFKDP_					0	0	0		ENSG00000196689|ENST00000572705|TRPV1;ENST00000572919.1_3_17:3488830-3495572:-|nuORF	ENSG00000196689|ENST00000572705|TRPV1	ENSG00000196689|ENST00000572705|TRPV1	MULTI-MSMS	A375_MHC_IP_R2	2	540.1549682617188	2	539.756204	1077.49785	-1.4025	-0.000757	0.55576	0.00029998	-0.84672	-0.00045702	539.7563516471498	29.668	0.50408	30.367	30.134	30.638	0.69872					16	9	2	0	0	0	0.29981	1	10371	10371		30.637	3.0077	1	3224400			34385	9076	25158	25332	33460	33460					-0.03779447898568833
LTDNEKNELIY	11	Unmodified	_LTDNEKNELIY_					0	0	0		tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1	tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1	tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	676.7408447265625	2	676.340632	1350.66671	-0.59143	-0.00040001	0.3187	0.00021555	-0.27273	-0.00018446	676.3408612153812	103.03	0.50942	103.03	102.71	103.22	0					18	9	3	0	0	0	0.56199	1	37854	37854		26.268	0	1	1412700			34386	29393	25159	25333	33461	33461					0.005404089442890836
LTDNEKNELIY	11	Unmodified	_LTDNEKNELIY_					0	0	0		tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1	tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1	tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	676.340632	1350.66671	-0.65886	-0.00044561	-0.76578	-0.00051793	-1.4246	-0.00096354	676.3403825716904	102.12	0.40491	102.88	102.72	103.12	0.76428	-0.073187	-0.00082423	NaN	26.268	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1733700			34387	29393	25159	25333							0.005404089442890836
LTDNGRHITY	10	Unmodified	_LTDNGRHITY_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	A375_MHC_IP_R1	1	397.60357666015625	3	397.203522	1188.58874	-0.22565	-8.9629E-05	0.43883	0.00017431	0.21318	8.4677E-05	397.203716873696	24.523	0.55562	24.523	24.397	24.953	0					18	10	2	0	0	0	0.21149	1	7010	7010		48.073	13.671	1	17759000			34388	2430	25160	25334	33462	33462					0.0019844086957618856
LTDNGRHITY	10	Unmodified	_LTDNGRHITY_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	A375_MHC_IP_R2	2	397.6032409667969	3	397.203522	1188.58874	-0.35216	-0.00013988	0.13335	5.2968E-05	-0.2188	-8.691E-05	397.20354188333386	23.88	0.40866	24.51	24.333	24.742	0.63014					22	7	4	0	0	0	0.12159	1	7766	7766		59.013	24.611	1	16172000			34389	2430	25160	25334	33463	33463					0.0019844086957618856
LTDPDGALAK	10	Unmodified	_LTDPDGALAK_					0	0	0		ENSG00000175203|ENST00000548249|DCTN2;nc|ENSG00000175203|Q13561-3|DCTN2;nc|ENSG00000175203|Q13561-2|DCTN2;ENST00000551872.1_1_12:57927977-57928175:-|nuORF;ENST00000552390.5_1_12:57926966-57928919:-|nuORF	ENSG00000175203|ENST00000548249|DCTN2	ENSG00000175203|ENST00000548249|DCTN2	MULTI-SECPEP	A375_MHC_IP_R1	1	501.1688537597656	2	500.769114	999.523675	-0.33855	-0.00016954	0.13654	6.8377E-05	-0.20201	-0.00010116	500.76916599190383	31.524	1.3747	31.524	31.16	32.535	0					71	26	5	0	0	0	0.015005	1	10051	10051		100.71	39.107	1	154000000			34390	7939	25161	25335	33464	33464					0.023894463437159175
LTDPDGALAK	10	Unmodified	_LTDPDGALAK_					0	0	0		ENSG00000175203|ENST00000548249|DCTN2;nc|ENSG00000175203|Q13561-3|DCTN2;nc|ENSG00000175203|Q13561-2|DCTN2;ENST00000551872.1_1_12:57927977-57928175:-|nuORF;ENST00000552390.5_1_12:57926966-57928919:-|nuORF	ENSG00000175203|ENST00000548249|DCTN2	ENSG00000175203|ENST00000548249|DCTN2	MULTI-SECPEP	A375_MHC_IP_R2	2	499.9829406738281	2	500.769114	999.523675	-0.61588	-0.00030842	-0.020894	-1.0463E-05	-0.63678	-0.00031888	500.76908365980114	30.92	1.3203	31.639	31.266	32.586	0.71857					68	25	5	0	0	0	0.20175	1	10926	10926		53.404	13.454	1	167040000			34391	7939	25161	25335	33465	33465					0.023894463437159175
LTDPEAAKY	9	Unmodified	_LTDPEAAKY_					0	0	0		nc|ENSG00000177628|P04062-4|GBA1;nc|ENSG00000177628|P04062-5|GBA1;nc|ENSG00000177628|P04062-2|GBA1;ENSG00000177628|ENST00000368373|GBA1;nc|ENSG00000177628|P04062-3|GBA1;ENST00000459805.5_1_1:155184905-155186549:-|nuORF;ENST00000486197.5_1_1:155184905-155187358:-|nuORF;ENST00000566701.5_1_1:155184905-155187601:-|nuORF;chr1:155236469-155237344|158|24.01|0.59|5.34|-|0|GBA1,None|1	nc|ENSG00000177628|P04062-4|GBA1	nc|ENSG00000177628|P04062-4|GBA1	MULTI-MSMS	A375_MHC_IP_R1	1	504.6553039550781	2	504.25584	1006.49713	-0.70704	-0.00035653	0.067435	3.4004E-05	-0.6396	-0.00032252	504.25582366414665	30.225	2.0224	30.225	29.899	31.921	0					88	39	5	0	0	0	0.010055	1	9534	9534		125.53	47.38	1	338110000			34392	8096	25162	25336	33466	33466					-0.005862425476266253
LTDPIQGTEY	10	Unmodified	_LTDPIQGTEY_					0	0	0		nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	MULTI-MSMS	A375_MHC_IP_R1	1	569.6785278320312	2	568.777136	1135.53972	-0.13986	-7.9547E-05	0.25351	0.00014419	0.11365	6.4644E-05	568.7772560640766	72.192	0.91234	72.192	71.815	72.728	0					55	17	4	0	0	0	2.8699E-05	1	26183	26183		160.69	118.85	1	44854000			34393	7685	25163	25337	33467	33467					-0.022628922100466298
LTDPIQGTEY	10	Unmodified	_LTDPIQGTEY_					0	0	0		nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	MULTI-MSMS	A375_MHC_IP_R2	2	568.7166137695312	2	568.777136	1135.53972	-0.64747	-0.00036826	0.04172	2.3729E-05	-0.60575	-0.00034454	568.7771427088356	71.603	0.9617	72.337	71.959	72.921	0.73421					55	18	4	0	0	0	0.0012231	2	27237	27237;27256		145.13	103.29	1	59159000			34394	7685	25163	25337	33468;33469	33468					-0.022628922100466298
LTDPSRDWDL	10	Unmodified	_LTDPSRDWDL_					0	0	0		ENST00000526177.5_1_11:75161715-75162177:-|nuORF	ENST00000526177.5_1_11:75161715-75162177:-|nuORF	ENST00000526177.5_1_11:75161715-75162177:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	407.1711730957031	3	406.531415	1216.57242	-0.053872	-2.1901E-05	0.10447	4.2472E-05	0.050601	2.0571E-05	406.8658453758839	74.807	0.30553	75.545	75.416	75.721	0.73752					8	5	2	0	0	0	0.93615	1	28428	28428		0.69767	0	1	940010			34395	13080	25164	25338	33470	33470					-0.02720685087183483
LTDPSTQLQL	10	Unmodified	_LTDPSTQLQL_					0	0	0		nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19	nc|ENSG00000155229|Q96T76-5|MMS19	nc|ENSG00000155229|Q96T76-5|MMS19	MULTI-SECPEP	A375_MHC_IP_R2	2	557.6693115234375	2	558.300778	1114.587	-0.52319	-0.0002921	1.2996	0.00072557	0.77641	0.00043347	558.301564883755	46.961	0.50805	47.723	47.462	47.97	0.76127					10	9	2	0	0	0	0.69172	1	17663	17663		19.257	1.1106	1	1886900			34396	6132	25165	25339	33471	33471					0.03429387060964473
LTDPVTICCGH	11	Unmodified	_LTDPVTICCGH_					0	0	0		ENSG00000214414|ENST00000398290|TRIM77	ENSG00000214414|ENST00000398290|TRIM77	ENSG00000214414|ENST00000398290|TRIM77	MULTI-SECPEP	A375_MHC_IP_R1	1	580.1680908203125	2	579.767734	1157.52091	-0.01379	-7.9952E-06	1.1042	0.00064017	1.0904	0.00063217	579.768156916302	72.259	0.70884	72.259	71.866	72.575	0					27	13	3	0	0	0	0.49142	1	26228	26228		47.749	9.5731	1	4786900			34397	9616	25166	25340	33472	33472					-0.05154468377122612
LTDPVTICCGH	11	Unmodified	_LTDPVTICCGH_					0	0	0		ENSG00000214414|ENST00000398290|TRIM77	ENSG00000214414|ENST00000398290|TRIM77	ENSG00000214414|ENST00000398290|TRIM77	MULTI-SECPEP	A375_MHC_IP_R2	2	580.1680297851562	2	579.767734	1157.52091	-0.57533	-0.00033356	0.68398	0.00039655	0.10865	6.2993E-05	579.7679889431175	71.572	0.50734	72.306	72.111	72.618	0.73421					17	9	2	0	0	0	0.55166	1	27152	27152		38.176	6.9072	1	6379100			34398	9616	25166	25340	33473	33473					-0.05154468377122612
LTDQAKQKSKL	11	Unmodified	_LTDQAKQKSKL_					0	0	0			REV__ENSG00000153879|ENST00000284000|CEBPG	REV__ENSG00000153879|ENST00000284000|CEBPG	MSMS	A375_MHC_IP_R2	2	630.4675903320312	2	630.369527	1258.7245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.571	1	80.315	79.815	80.815	0.74474								0	0	0	0.1534	1	30197	30197		18.373	3.1246	1		+		34399	19852	25167	25341	33474	33474					0.10548715660365815
LTDQDVSFYF	10	Unmodified	_LTDQDVSFYF_					0	0	0		MROH2B|p.R1379Q|2|0.31|ENSG00000171495|chr5:41004404-41004404|C/T|missense_variant	MROH2B|p.R1379Q|2|0.31|ENSG00000171495|chr5:41004404-41004404|C/T|missense_variant	MROH2B|p.R1379Q|2|0.31|ENSG00000171495|chr5:41004404-41004404|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	618.4288940429688	2	617.784961	1233.55537	-0.28649	-0.00017699	-0.086069	-5.3172E-05	-0.37256	-0.00023016	617.7848875551687	88.335	0.76434	88.335	87.848	88.612	0					31	14	4	0	0	0	0.70329	1	32397	32397		10.824	1.28	1	4284500			34400	14403	25168	25342	33475	33475					-0.0520660569300162
LTDQHIQVAK	10	Unmodified	_LTDQHIQVAK_					0	0	0			REV__nc|ENSG00000126070|Q9H9G7-2|AGO3	REV__nc|ENSG00000126070|Q9H9G7-2|AGO3	MULTI-SECPEP	A375_MHC_IP_R1	1	576.1896362304688	2	576.822212	1151.62987	-0.26674	-0.00015386	-0.29901	-0.00017247	-0.56575	-0.00032633	576.8220473070976	52.512	0.91335	52.512	52.336	53.25	0					38	17	3	0	0	0	0.87163	1	18884	18884		19.257	6.2145	1	12107000	+		34401	18378	25169	25343	33476	33476					0.060122019090158574
LTDQPYTPSDP	11	Unmodified	_LTDQPYTPSDP_					0	0	0		ENST00000498794.1_1_3:49053846-49053972:-|nuORF	ENST00000498794.1_1_3:49053846-49053972:-|nuORF	ENST00000498794.1_1_3:49053846-49053972:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	617.7221069335938	2	617.285325	1232.5561	-0.54842	-0.00033853	0.16671	0.0001029	-0.38172	-0.00023563	617.2852184047367	68.683	0.50549	69.418	69.171	69.677	0.73511					14	9	2	0	0	0	0.53345	1	25970	25970		28.495	3.5035	1	1322500			34402	12768	25170	25344	33477	33477					-0.05087811043972579
LTDQRPSVL	9	Unmodified	_LTDQRPSVL_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-SECPEP	A375_MHC_IP_R2	2	515.1900024414062	2	514.790381	1027.56621	-0.7067	-0.0003638	2.3014	0.0011848	1.5947	0.00082096	514.7903801620541	42.112	0.56207	42.884	42.605	43.167	0.7724					25	10	4	0	0	0	0.33896	1	15643	15643		40.239	2.0636	1	9106500	+		34403	16952	25171	25345	33478	33478					0.05352841471949432
LTDQSQELDR	10	Unmodified	_LTDQSQELDR_					0	0	0			REV__PDZRN4|p.G589E|1|0.96|ENSG00000165966|chr12:41572545-41572545|G/A|missense_variant	REV__PDZRN4|p.G589E|1|0.96|ENSG00000165966|chr12:41572545-41572545|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	604.7534790039062	2	602.793849	1203.57314	-0.37861	-0.00022822	-0.24808	-0.00014954	-0.62669	-0.00037776	603.2952257040209	87.662	1.4174	88.394	87.913	89.331	0.7318					79	27	5	0	0	0	0.70329	1	33397	33397		10.824	0	1	87473000	+		34404	27762	25172	25346	33479	33479					-0.02049890438138391
LTDRELEEY	9	Unmodified	_LTDRELEEY_					0	0	0		nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ENST00000513762.2_1_4:2911056-2928400:+|nuORF;nc|ENSG00000087274|P35611-4|ADD1;ENSG00000087274|ENST00000683351|ADD1	nc|ENSG00000087274|P35611-2|ADD1	nc|ENSG00000087274|P35611-2|ADD1	MULTI-MSMS	A375_MHC_IP_R2	2	584.6826782226562	2	584.280043	1166.54553	-0.26269	-0.00015349	1.0441	0.00061004	0.78139	0.00045655	584.2810009576381	43.763	0.90921	44.532	44.025	44.934	0.7691					36	17	3	0	0	0	0.085252	1	16249	16249		53.317	14.702	1	7139500			34405	14492	25173	25347	33480	33480					-0.03107793698382011
LTDRGGPLGY	10	Unmodified	_LTDRGGPLGY_					0	0	0		ENSG00000143382|ENST00000271643|ADAMTSL4;nc|ENSG00000143382|Q6UY14-3|ADAMTSL4;nc|ENSG00000143382|Q6UY14-2|ADAMTSL4	ENSG00000143382|ENST00000271643|ADAMTSL4	ENSG00000143382|ENST00000271643|ADAMTSL4	MULTI-SECPEP	A375_MHC_IP_R1	1	525.1746215820312	2	524.774731	1047.53491	-0.13248	-6.9525E-05	-0.19538	-0.00010253	-0.32786	-0.00017205	524.7745887974858	45.389	0.65689	45.389	44.98	45.636	0					30	12	3	0	0	0	0.47871	1	15836	15836		51.488	33.342	1	7166500			34406	5380	25174	25348	33481	33481					0.013042684378660852
LTDRGGPLGY	10	Unmodified	_LTDRGGPLGY_					0	0	0		ENSG00000143382|ENST00000271643|ADAMTSL4;nc|ENSG00000143382|Q6UY14-3|ADAMTSL4;nc|ENSG00000143382|Q6UY14-2|ADAMTSL4	ENSG00000143382|ENST00000271643|ADAMTSL4	ENSG00000143382|ENST00000271643|ADAMTSL4	MULTI-MSMS	A375_MHC_IP_R2	2	525.1741333007812	2	524.774731	1047.53491	-0.55731	-0.00029246	-0.31776	-0.00016675	-0.87506	-0.00045921	524.7744131896548	44.557	0.5589	45.326	45.035	45.594	0.7691					25	10	3	0	0	0	0.051218	1	16596	16596		75.571	29.871	1	7097500			34407	5380	25174	25348	33482	33482					0.013042684378660852
LTDRGVMSY	9	Oxidation (M)	_LTDRGVM(Oxidation (M))SY_		LTDRGVM(1)SY		LTDRGVM(100)SY	0	0	1		ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3;ENST00000602190.1_1_19:50164877-50165571:-|nuORF	ENSG00000126456|ENST00000377139|IRF3	ENSG00000126456|ENST00000377139|IRF3	MULTI-MSMS	A375_MHC_IP_R1	1	529.6524658203125	2	529.252774	1056.491	-0.63703	-0.00033715	-0.32587	-0.00017247	-0.9629	-0.00050962	529.2526612428604	27.302	0.70809	27.302	27.078	27.786	0					28	13	3	0	0	0	0.0092755	1	8244	8244		103.82	51.555	1	21243000			34408	4042	25175	25349	33483	33483		210			-0.034990840507816756
LTDRGVMSY	9	Oxidation (M)	_LTDRGVM(Oxidation (M))SY_		LTDRGVM(1)SY		LTDRGVM(58)SY	0	0	1		ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3;ENST00000602190.1_1_19:50164877-50165571:-|nuORF	ENSG00000126456|ENST00000377139|IRF3	ENSG00000126456|ENST00000377139|IRF3	MULTI-MSMS	A375_MHC_IP_R1	1	529.7213745117188	2	529.252774	1056.491	-0.64428	-0.00034099	-0.1094	-5.7901E-05	-0.75368	-0.00039889	529.2527482175324	28.809	1.5666	28.809	27.836	29.403	0					51	30	2	0	0	0	0.066859	1	8666	8666		57.722	9.3761	1	3539600			34409	4042	25175	25349	33484	33484		210			-0.034990840507816756
LTDRGVMSY	9	Oxidation (M)	_LTDRGVM(Oxidation (M))SY_		LTDRGVM(1)SY		LTDRGVM(50)SY	0	0	1		ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3;ENST00000602190.1_1_19:50164877-50165571:-|nuORF	ENSG00000126456|ENST00000377139|IRF3	ENSG00000126456|ENST00000377139|IRF3	MULTI-MSMS	A375_MHC_IP_R1	1	529.7160034179688	2	529.252774	1056.491	-0.43938	-0.00023255	-1.3524	-0.00071576	-1.7918	-0.0009483	529.2522572796275	42.437	0.35401	42.437	42.183	42.537	0					14	6	3	0	0	0	0.10622	1	14687	14687		49.554	17.249	1	1583800			34410	4042	25175	25349	33485	33485		210			-0.034990840507816756
LTDRGVMSY	9	Oxidation (M)	_LTDRGVM(Oxidation (M))SY_		LTDRGVM(1)SY		LTDRGVM(110)SY	0	0	1		ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3;ENST00000602190.1_1_19:50164877-50165571:-|nuORF	ENSG00000126456|ENST00000377139|IRF3	ENSG00000126456|ENST00000377139|IRF3	MULTI-MSMS	A375_MHC_IP_R2	2	529.6522216796875	2	529.252774	1056.491	-0.86449	-0.00045754	-0.18231	-9.6487E-05	-1.0468	-0.00055402	529.252655185946	26.728	0.61344	27.388	27.109	27.722	0.65992					25	11	3	0	0	0	0.0098082	1	9045	9045		114.19	46.843	1	24004000			34411	4042	25175	25349	33486	33486		210			-0.034990840507816756
LTDRGVMSY	9	Unmodified	_LTDRGVMSY_					0	0	0		ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3;ENST00000602190.1_1_19:50164877-50165571:-|nuORF	ENSG00000126456|ENST00000377139|IRF3	ENSG00000126456|ENST00000377139|IRF3	MULTI-MSMS	A375_MHC_IP_R1	1	521.6555786132812	2	521.255317	1040.49608	-0.38705	-0.00020175	-0.95041	-0.0004954	-1.3375	-0.00069715	521.2545815316321	42.367	0.85832	42.367	41.932	42.79	0					38	16	4	0	0	0	0.085252	1	14652	14652		53.317	16.811	1	9651400			34412	4042	25175	25350	33487	33487					-0.022547801881728446
LTDRQVKIW	9	Unmodified	_LTDRQVKIW_					0	0	0		ENST00000514415.1_1_12:54380145-54383227:+|nuORF;ENST00000511575.1_1_12:54379937-54383227:+|nuORF;ENST00000243082.4_1_12:54367506-54369194:+|nuORF;ENSG00000123388|ENST00000546378|HOXC11;ENSG00000005073|ENST00000006015|HOXA11;ENSG00000128713|ENST00000249504|HOXD11;ENSG00000128710|ENST00000249501|HOXD10;ENSG00000180818|ENST00000303460|HOXC10;nc|ENSG00000253293|P31260-2|HOXA10;ENST00000519593.1_1_7:27211520-27212237:-|nuORF;ENSG00000253293|ENST00000283921|HOXA10	ENST00000514415.1_1_12:54380145-54383227:+|nuORF	ENST00000514415.1_1_12:54380145-54383227:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	387.2926330566406	3	386.892507	1157.65569	0.37074	0.00014343	-1.0057	-0.00038911	-0.63499	-0.00024567	386.89202479062385	47.693	1.0601	47.693	47.366	48.426	0					56	20	4	0	0	0	0.26911	1	16737	16737		32.898	0	1	27750000			34413	881	25176	25351	33488	33488					0.08317096151336045
LTDRQVKIW	9	Unmodified	_LTDRQVKIW_					0	0	0		ENST00000514415.1_1_12:54380145-54383227:+|nuORF;ENST00000511575.1_1_12:54379937-54383227:+|nuORF;ENST00000243082.4_1_12:54367506-54369194:+|nuORF;ENSG00000123388|ENST00000546378|HOXC11;ENSG00000005073|ENST00000006015|HOXA11;ENSG00000128713|ENST00000249504|HOXD11;ENSG00000128710|ENST00000249501|HOXD10;ENSG00000180818|ENST00000303460|HOXC10;nc|ENSG00000253293|P31260-2|HOXA10;ENST00000519593.1_1_7:27211520-27212237:-|nuORF;ENSG00000253293|ENST00000283921|HOXA10	ENST00000514415.1_1_12:54380145-54383227:+|nuORF	ENST00000514415.1_1_12:54380145-54383227:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	387.29241943359375	3	386.892507	1157.65569	0.043304	1.6754E-05	-0.73846	-0.0002857	-0.69515	-0.00026895	386.8921315391583	46.781	1.2743	47.542	47.155	48.429	0.76128					54	24	4	0	0	0	0.14368	1	17496	17496		42.835	9.9374	1	33312000			34414	881	25176	25351	33489	33489					0.08317096151336045
LTDRQVKIW	9	Unmodified	_LTDRQVKIW_					0	0	0		ENST00000514415.1_1_12:54380145-54383227:+|nuORF;ENST00000511575.1_1_12:54379937-54383227:+|nuORF;ENST00000243082.4_1_12:54367506-54369194:+|nuORF;ENSG00000123388|ENST00000546378|HOXC11;ENSG00000005073|ENST00000006015|HOXA11;ENSG00000128713|ENST00000249504|HOXD11;ENSG00000128710|ENST00000249501|HOXD10;ENSG00000180818|ENST00000303460|HOXC10;nc|ENSG00000253293|P31260-2|HOXA10;ENST00000519593.1_1_7:27211520-27212237:-|nuORF;ENSG00000253293|ENST00000283921|HOXA10	ENST00000514415.1_1_12:54380145-54383227:+|nuORF	ENST00000514415.1_1_12:54380145-54383227:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	386.892507	1157.65569	0.37074	0.00014343	-1.0057	-0.00038911	-0.63499	-0.00024567	386.89202479062385	47.693	1.0601	47.693	47.366	48.426	0	0.075316	-0.00015812	NaN	42.835	56	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27750000			34415	881	25176	25351							0.08317096151336045
LTDSNADTYW	10	Unmodified	_LTDSNADTYW_					0	0	0		ENSG00000126107|ENST00000372172|HECTD3	ENSG00000126107|ENST00000372172|HECTD3	ENSG00000126107|ENST00000372172|HECTD3	MULTI-MSMS	A375_MHC_IP_R2	2	593.6558227539062	2	593.256568	1184.49858	-0.46016	-0.000273	-0.44005	-0.00026106	-0.90021	-0.00053406	593.2561641239254	68.797	0.40652	69.532	69.373	69.779	0.73511					11	7	2	0	0	0	0.70329	1	26130	26130		10.824	1.4408	1	2358500			34416	4026	25177	25352	33490	33490					-0.08628653249525087
LTDSNADTYW	10	Unmodified	_LTDSNADTYW_					0	0	0		ENSG00000126107|ENST00000372172|HECTD3	ENSG00000126107|ENST00000372172|HECTD3	ENSG00000126107|ENST00000372172|HECTD3	MULTI-MATCH	A375_MHC_IP_R1	1		2	593.256568	1184.49858	0.17331	0.00010282	-1.2929	-0.00076705	-1.1196	-0.00066423	593.2553852722634	69.538	0.25414	69.538	69.377	69.631	0	0.0026096	-0.00064367	NaN	10.824	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1190000			34417	4026	25177	25352							-0.08628653249525087
LTDSNADTYW	10	Unmodified	_LTDSNADTYW_					0	0	0		ENSG00000126107|ENST00000372172|HECTD3	ENSG00000126107|ENST00000372172|HECTD3	ENSG00000126107|ENST00000372172|HECTD3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	593.256568	1184.49858	-0.46016	-0.000273	-0.44005	-0.00026106	-0.90021	-0.00053406	593.2561641239254	68.797	0.40652	69.532	69.373	69.779	0.73511	-0.0026096	0.0003683	NaN	10.824	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2358500			34418	4026	25177	25352							-0.08628653249525087
LTDSNNIKEVL	11	Unmodified	_LTDSNNIKEVL_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MSMS	A375_MHC_IP_R1	1	415.9591369628906	3	415.894354	1244.66123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.73	1	23.73	23.23	24.23	0								0	0	0	0.16124	1	6579	6579		12.228	1.1623	1				34419	1382	25178	25353	33491	33491					0.04868730152452372
LTDSSLKY	8	Unmodified	_LTDSSLKY_					0	0	0		nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;ENST00000331103.5_1_22:38150943-38151269:+|nuORF;nc|ENSG00000100106|Q9H2D6-6|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-SECPEP	A375_MHC_IP_R2	2	464.1446228027344	2	463.745108	925.475663	-0.79701	-0.00036961	1.4207	0.00065886	0.62372	0.00028925	463.74496197738813	34.484	0.50839	35.237	35.006	35.514	0.75225					22	9	3	0	0	0	0.46955	1	12473	12473		56.177	22.075	1	5580000			34420	2120	25179	25354	33492	33492					0.009943724236563867
LTDSWEALS	9	Unmodified	_LTDSWEALS_					0	0	0		ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-MSMS	A375_MHC_IP_R1	1	512.1900634765625	2	511.245472	1020.47639	-0.79549	-0.00040669	0.4442	0.0002271	-0.35129	-0.00017959	511.24548736478806	30.205	0.60447	30.205	29.999	30.603	0					23	11	3	0	0	0	0.4867	1	9657	9657		20.454	1.1966	1	10536000			34421	3562	25180	25355	33493	33493					-0.03302832927295185
LTDSWEALS	9	Unmodified	_LTDSWEALS_					0	0	0		ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-SECPEP	A375_MHC_IP_R2	2	511.64495849609375	2	511.245472	1020.47639	-1.2856	-0.00065724	0.64392	0.0003292	-0.64164	-0.00032803	511.2456519335642	29.634	0.70699	30.333	30.083	30.79	0.69872					29	13	3	0	0	0	0.24479	1	10352	10352		50.855	3.1063	1	10755000			34422	3562	25180	25355	33494	33494					-0.03302832927295185
LTDTFTAYY	9	Unmodified	_LTDTFTAYY_					0	0	0		ENSG00000134779|ENST00000334295|TPGS2;nc|ENSG00000134779|Q68CL5-3|TPGS2;nc|ENSG00000134779|Q68CL5-1|TPGS2;nc|ENSG00000134779|Q68CL5-4|TPGS2;nc|ENSG00000134779|Q68CL5-5|TPGS2	ENSG00000134779|ENST00000334295|TPGS2;nc|ENSG00000134779|Q68CL5-5|TPGS2	ENSG00000134779|ENST00000334295|TPGS2	MULTI-MSMS	A375_MHC_IP_R1	1	548.1549682617188	2	547.755672	1093.49679	-0.66883	-0.00036635	0.58275	0.0003192	-0.086078	-4.715E-05	547.7554821434532	94.471	0.96265	94.471	93.84	94.802	0					32	18	3	0	0	0	0.1478	2	34714	34714;34760		42.095	7.9921	1	4302700			34423	4608;14612	25181	25356	33495;33496	33495					-0.046216622674592145
LTDTFTAYY	9	Unmodified	_LTDTFTAYY_					0	0	0		ENSG00000134779|ENST00000334295|TPGS2;nc|ENSG00000134779|Q68CL5-3|TPGS2;nc|ENSG00000134779|Q68CL5-1|TPGS2;nc|ENSG00000134779|Q68CL5-4|TPGS2;nc|ENSG00000134779|Q68CL5-5|TPGS2	ENSG00000134779|ENST00000334295|TPGS2;nc|ENSG00000134779|Q68CL5-5|TPGS2	ENSG00000134779|ENST00000334295|TPGS2	MULTI-MSMS	A375_MHC_IP_R1	1	1095.398193359375	1	1094.50407	1093.49679	-0.041191	-4.5084E-05	-0.28185	-0.00030849	-0.32304	-0.00035357	1094.5036952931875	94.471	1.1192	94.471	94.041	95.16	0					61	21	4	0	0	0	0.0094266	1	34730	34730		97.075	46.22	1	63852000			34424	4608;14612	25181	25356	33497	33497					-0.046216622674592145
LTDTFTAYY	9	Unmodified	_LTDTFTAYY_					0	0	0		ENSG00000134779|ENST00000334295|TPGS2;nc|ENSG00000134779|Q68CL5-3|TPGS2;nc|ENSG00000134779|Q68CL5-1|TPGS2;nc|ENSG00000134779|Q68CL5-4|TPGS2;nc|ENSG00000134779|Q68CL5-5|TPGS2	ENSG00000134779|ENST00000334295|TPGS2;nc|ENSG00000134779|Q68CL5-5|TPGS2	ENSG00000134779|ENST00000334295|TPGS2	MULTI-MSMS	A375_MHC_IP_R2	2	548.1546020507812	2	547.755672	1093.49679	-0.62801	-0.000344	-0.50043	-0.00027412	-1.1284	-0.00061811	547.7551612947082	93.8	0.86223	94.545	94.006	94.869	0.74473					28	16	3	0	0	0	0.11296	1	35628	35628		48.346	25.197	1	3355900			34425	4608;14612	25181	25356	33498	33498					-0.046216622674592145
LTDTPKATSY	10	Unmodified	_LTDTPKATSY_					0	0	0		ENST00000466854.5_1_3:122081873-122084420:-|nuORF;ENST00000460810.1_1_3:122081873-122084409:-|nuORF	ENST00000466854.5_1_3:122081873-122084420:-|nuORF	ENST00000466854.5_1_3:122081873-122084420:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	549.1665649414062	2	548.779679	1095.5448	-0.62025	-0.00034038	-0.46212	-0.0002536	-1.0824	-0.00059398	548.7793666837318	27.494	0.35302	27.494	27.331	27.684	0					10	6	2	0	0	0	0.32288	1	8360	8360		51.415	14.909	1	3500900			34426	12173	25182	25357	33499	33499					0.0008541165257156536
LTDTPKATSY	10	Unmodified	_LTDTPKATSY_					0	0	0		ENST00000466854.5_1_3:122081873-122084420:-|nuORF;ENST00000460810.1_1_3:122081873-122084409:-|nuORF	ENST00000466854.5_1_3:122081873-122084420:-|nuORF	ENST00000466854.5_1_3:122081873-122084420:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	549.1669921875	2	548.779679	1095.5448	-0.92725	-0.00050886	1.2611	0.00069207	0.33386	0.00018322	548.779683284473	26.966	0.51269	27.626	27.414	27.927	0.65992					15	9	2	0	0	0	0.22519	1	9161	9161		51.415	14.909	1	2072900			34427	12173	25182	25357	33500	33500					0.0008541165257156536
LTDVKDFSLPL	11	Unmodified	_LTDVKDFSLPL_					0	0	0		ENST00000480292.5_1_3:158520095-158542024:+|nuORF;nc|ENSG00000118855|Q9H3U5-5|MFSD1;ENST00000465624.5_1_3:158537406-158546768:+|nuORF;nc|ENSG00000118855|Q9H3U5-4|MFSD1;nc|ENSG00000118855|Q9H3U5-3|MFSD1;ENSG00000118855|ENST00000415822|MFSD1;nc|ENSG00000118855|Q9H3U5-6|MFSD1	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	MSMS	A375_MHC_IP_R2	2	624.6770629882812	2	624.347729	1246.6809	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.821	1	74.558	74.058	75.058	0.7367								0	0	0	0.16179	1	28021	28021		9.3831	2.0939	1				34428	12496	25183	25358	33501	33501					0.06743106163253287
LTDVWTYSNT	10	Unmodified	_LTDVWTYSNT_					0	0	0		LY75|p.D358N|1|0.15|ENSG00000054219|chr2:159882298-159882298|C/T|missense_variant	LY75|p.D358N|1|0.15|ENSG00000054219|chr2:159882298-159882298|C/T|missense_variant	LY75|p.D358N|1|0.15|ENSG00000054219|chr2:159882298-159882298|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	601.1842041015625	2	600.282586	1198.55062	-0.40369	-0.00024233	-0.58806	-0.000353	-0.99175	-0.00059533	600.2813169365303	68.705	0.9627	69.44	68.867	69.83	0.73512					21	13	2	0	0	0	0.63336	1	26061	26061		18.373	0.93045	1	3128200			34429	14333	25184	25359	33502	33502					-0.04071489835769171
LTDWNQFE	8	Unmodified	_LTDWNQFE_					0	0	0			REV__nc|ENSG00000119684|Q9UHC1-2|MLH3	REV__nc|ENSG00000119684|Q9UHC1-2|MLH3	MULTI-SECPEP	A375_MHC_IP_R2	2	527.1371459960938	2	526.737814	1051.46108	-0.4799	-0.00025278	0.0065772	3.4645E-06	-0.47332	-0.00024932	526.7376551511309	107.83	1.5821	108.58	108.05	109.63	0.75436					34	13	3	0	0	0	0.95423	1	40707	40707		7.9102	0.62092	1	4486100	+		34430	18084	25185	25360	33503	33503					-0.06259699724455459
LTDYAVTEAG	10	Unmodified	_LTDYAVTEAG_					0	0	0		tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1	tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1	tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	520.6503295898438	2	520.250754	1038.48696	-0.84638	-0.00044033	0.2512	0.00013069	-0.59518	-0.00030964	520.2507995644999	30.225	0.70466	30.225	30.049	30.754	0					21	13	2	0	0	0	0.48529	1	9598	9598		29.082	0	1	6704000			34431	29887	25186	25361	33504	33504					-0.03074850272855656
LTDYINANY	9	Unmodified	_LTDYINANY_					0	0	0		nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000106278|P23471-3|PTPRZ1	nc|ENSG00000106278|P23471-2|PTPRZ1	nc|ENSG00000106278|P23471-2|PTPRZ1	MULTI-SECPEP	A375_MHC_IP_R2	2	543.6428833007812	2	543.758746	1085.50294	-0.81334	-0.00044226	-0.013354	-7.2613E-06	-0.8267	-0.00044952	543.7587224862249	73.049	0.56109	73.784	73.53	74.091	0.73541					15	10	2	0	0	0	0.49205	1	27760	27760		27.629	12.791	1	1045400			34432	2679	25187	25362	33505	33505					-0.03639144035969366
LTDYNVETQF	10	Unmodified	_LTDYNVETQF_					0	0	0			REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	MULTI-SECPEP	A375_MHC_IP_R1	1	615.9615478515625	2	615.287868	1228.56118	-0.23282	-0.00014325	-0.24778	-0.00015246	-0.4806	-0.00029571	615.2877008764896	72.684	0.55786	72.684	72.372	72.93	0					18	10	2	0	0	0	0.70528	1	26518	26518		26.268	0	1	3673300	+		34433	15922	25188	25363	33506	33506					-0.04395507181334324
LTEADCWVS	9	Unmodified	_LTEADCWVS_					0	0	0			REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF	REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF	MSMS	A375_MHC_IP_R1	1	512.1793823242188	2	512.226225	1022.4379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.489	1	60.489	59.989	60.989	0								0	0	0	0.14905	1	21778	21778		23.148	2.2772	1		+		34434	19437	25189	25364	33507	33507					-0.07242461833459402
LTEADLQY	8	Unmodified	_LTEADLQY_					0	0	0		nc|ENSG00000108094|Q13617-2|CUL2;ENSG00000108094|ENST00000374749|CUL2	nc|ENSG00000108094|Q13617-2|CUL2	nc|ENSG00000108094|Q13617-2|CUL2	MULTI-SECPEP	A375_MHC_IP_R1	1	952.9248046875	1	952.462204	951.454927	0.0040863	3.892E-06	2.2856	0.0021769	2.2896	0.0021808	952.4656070058084	58.172	0.15276	58.172	58.075	58.228	0					4	2	2	0	0	0	0.972	1	20908	20908		12.532	3.1841	1	740420			34435	2784	25190	25365	33508	33508					-0.02274217956016855
LTEAGAPEL	9	Unmodified	_LTEAGAPEL_					0	0	0		ENSG00000185163|ENST00000397333|DDX51	ENSG00000185163|ENST00000397333|DDX51	ENSG00000185163|ENST00000397333|DDX51	MSMS	A375_MHC_IP_R1	1	450.6346435546875	2	450.737283	899.460012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.129	1	42.129	41.629	42.629	0								0	0	0	0.14905	1	14583	14583		23.148	2.2772	1				34436	8648	25191	25366	33509	33509					0.006260859066173907
LTEDDDFEI	9	Unmodified	_LTEDDDFEI_					0	0	0		nc|ENSG00000183117|Q96PZ7-2|CSMD1;CSMD1|p.G3420Afs*7|1|0.38|ENSG00000183117|chr8:2950294-2950294|A/-|frameshift_variant;ENSG00000183117|ENST00000635120|CSMD1	nc|ENSG00000183117|Q96PZ7-2|CSMD1	nc|ENSG00000183117|Q96PZ7-2|CSMD1	MSMS	A375_MHC_IP_R1	1	548.6878662109375	2	548.737677	1095.4608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.309	1	56.309	55.809	56.809	0								0	0	0	0.1521	1	20170	20170		18.135	0	1				34437	671	25192	25367	33510	33510					-0.083111642349877
LTEDDDFEI	9	Unmodified	_LTEDDDFEI_					0	0	0		nc|ENSG00000183117|Q96PZ7-2|CSMD1;CSMD1|p.G3420Afs*7|1|0.38|ENSG00000183117|chr8:2950294-2950294|A/-|frameshift_variant;ENSG00000183117|ENST00000635120|CSMD1	nc|ENSG00000183117|Q96PZ7-2|CSMD1	nc|ENSG00000183117|Q96PZ7-2|CSMD1	MSMS	A375_MHC_IP_R1	1	548.6744384765625	2	548.737677	1095.4608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.326	1	56.326	55.826	56.826	0								0	0	0	0.1521	1	20176	20176		18.135	0	1				34438	671	25192	25367	33511	33511					-0.083111642349877
LTEDFRFF	8	Unmodified	_LTEDFRFF_					0	0	0		tr|U7T0T9|U7T0T9_FUSNUOsmoprotectanttransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00647PE=3SV=1	tr|U7T0T9|U7T0T9_FUSNUOsmoprotectanttransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00647PE=3SV=1	tr|U7T0T9|U7T0T9_FUSNUOsmoprotectanttransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00647PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	538.1680297851562	2	537.766374	1073.5182	-0.89857	-0.00048322	1.6546	0.00088979	0.75603	0.00040657	537.7674965014966	98.076	0.61229	98.835	98.589	99.201	0.75977					16	11	2	0	0	0	0.93661	1	37242	37242		10.824	4.1008	1	1227300			34439	29889	25193	25368	33512	33512					-0.01562232448100076
LTEDKIRIF	9	Unmodified	_LTEDKIRIF_					0	0	0		PKDREJ|p.E1693K|1|0.47|ENSG00000130943|chr22:46258246-46258246|C/T|missense_variant	PKDREJ|p.E1693K|1|0.47|ENSG00000130943|chr22:46258246-46258246|C/T|missense_variant	PKDREJ|p.E1693K|1|0.47|ENSG00000130943|chr22:46258246-46258246|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	567.7066650390625	2	567.829506	1133.64446	0.065342	3.7103E-05	-0.58629	-0.00033291	-0.52095	-0.00029581	567.8290428101318	38.857	0.30394	38.857	38.73	39.033	0					10	5	2	0	0	0	0.78353	1	13196	13196		13.906	5.1606	1	2392200			34440	15187	25194	25369	33513	33513					0.08298274057165145
LTEDKIRIF	9	Unmodified	_LTEDKIRIF_					0	0	0		PKDREJ|p.E1693K|1|0.47|ENSG00000130943|chr22:46258246-46258246|C/T|missense_variant	PKDREJ|p.E1693K|1|0.47|ENSG00000130943|chr22:46258246-46258246|C/T|missense_variant	PKDREJ|p.E1693K|1|0.47|ENSG00000130943|chr22:46258246-46258246|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	567.829506	1133.64446	-0.58538	-0.00033239	-0.0031442	-1.7853E-06	-0.58852	-0.00033418	567.8293924354947	37.991	0.36108	38.765	38.585	38.946	0.77451	-0.045918	0.00045545	NaN	9.3831	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2522600			34441	15187	25194	25369							0.08298274057165145
LTEDQIEY	8	Unmodified	_LTEDQIEY_					0	0	0		RBM33|p.E1103Gfs*12|1|0.21|ENSG00000184863|chr7:155766588-155766588|A/-|frameshift_variant;ENSG00000184863|ENST00000401878|RBM33;nc|ENSG00000184863|Q96EV2-2|RBM33	RBM33|p.E1103Gfs*12|1|0.21|ENSG00000184863|chr7:155766588-155766588|A/-|frameshift_variant	RBM33|p.E1103Gfs*12|1|0.21|ENSG00000184863|chr7:155766588-155766588|A/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	505.6687927246094	2	505.73748	1009.46041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.358	1	36.358	35.858	36.858	0								0	0	0	0.16876	1	12165	12165		8.5933	0.68312	1				34442	8615	25195	25370	33514	33514					-0.043945391641841525
LTEEFRLNY	9	Unmodified	_LTEEFRLNY_					0	0	0		nc|ENSG00000063761|Q86TW2-3|ADCK1;ADCK1|p.R501Afs*3|1|0.21|ENSG00000063761|chr14:77933320-77933336|CGTGTGAAGGGGTTGAA/-|frameshift_variant;ENSG00000063761|ENST00000238561|ADCK1;nc|ENSG00000063761|Q86TW2|ADCK1	nc|ENSG00000063761|Q86TW2-3|ADCK1	nc|ENSG00000063761|Q86TW2-3|ADCK1	MULTI-SECPEP	A375_MHC_IP_R1	1	593.201171875	2	592.800946	1183.58734	-0.35224	-0.00020881	0.70115	0.00041564	0.3489	0.00020683	592.8007887191488	74.779	0.45671	74.779	74.553	75.009	0					12	8	2	0	0	0	0.20059	1	27276	27276		59.368	24.967	1	1098300			34443	56	25196	25371	33515	33515					0.0028880678080440703
LTEEGQVSYD	10	Unmodified	_LTEEGQVSYD_					0	0	0		ENST00000296487.8_2_3:52283629-52283827:+|nuORF;nc|ENSG00000164088|Q96MI6-3|PPM1M;ENST00000482724.1_1_3:52282581-52283827:+|nuORF;ENST00000489606.5_1_3:52282326-52283827:+|nuORF;nc|ENSG00000164088|Q96MI6-4|PPM1M;ENSG00000164088|ENST00000323588|PPM1M	ENST00000296487.8_2_3:52283629-52283827:+|nuORF	ENST00000296487.8_2_3:52283629-52283827:+|nuORF	MSMS	A375_MHC_IP_R2	2	570.6665649414062	2	570.756401	1139.49825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.22	1	100.98	100.48	101.48	0.76278								0	0	0	0.15158	1	38003	38003		14.838	0.25658	1				34444	6777	25197	25372	33516	33516					-0.06592072969374385
LTEEIIRIKKF	11	Unmodified	_LTEEIIRIKKF_					0	0	0		tr|U7SYS3|U7SYS3_FUSNUIntegrationhostfactorsubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00898PE=4SV=1	tr|U7SYS3|U7SYS3_FUSNUIntegrationhostfactorsubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00898PE=4SV=1	tr|U7SYS3|U7SYS3_FUSNUIntegrationhostfactorsubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00898PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	464.6557312011719	3	463.953655	1388.83914	-0.18367	-8.5216E-05	-0.13318	-6.1788E-05	-0.31685	-0.000147	463.9536148969804	63.452	0.6652	63.452	63.121	63.786	0					24	12	3	0	0	0	0.73472	1	22960	22960		4.4062	0	1	5507100			34445	29845	25198	25373	33517	33517					0.160270251422844
LTEFCVVCY	9	Unmodified	_LTEFCVVCY_					0	0	0			REV__nc|ENSG00000115641|Q14192-2|FHL2	REV__nc|ENSG00000115641|Q14192-2|FHL2	MULTI-SECPEP	A375_MHC_IP_R2	2	537.9859008789062	2	538.743196	1075.47184	-0.88324	-0.00047584	2.2412	0.0012074	1.3579	0.00073158	539.2457438948095	98.284	0.56081	99.044	98.589	99.15	0.75977					14	10	2	0	0	0	0.69504	1	37296	37296		1.8442	1.8442	1	663970	+		34446	17901	25199	25374	33518	33518					-0.06287756666051791
LTEFLDDVFKQ	11	Unmodified	_LTEFLDDVFKQ_					0	0	0			REV__ENSG00000076356|ENST00000367033|PLXNA2	REV__ENSG00000076356|ENST00000367033|PLXNA2	MULTI-SECPEP	A375_MHC_IP_R1	1	678.2481079101562	2	677.848093	1353.68163	-0.74304	-0.00050367	0.51678	0.0003503	-0.22626	-0.00015337	677.848307507903	65.441	0.51108	65.441	65.105	65.616	0					14	9	2	0	0	0	0.98994	1	23746	23746		17.443	0	1	1527100	+		34447	16673	25200	25375	33519	33519					0.018939008122742962
LTEGEAIDIS	10	Unmodified	_LTEGEAIDIS_					0	0	0			REV__tr|U7SN85|U7SN85_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01748PE=3SV=1	REV__tr|U7SN85|U7SN85_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01748PE=3SV=1	MSMS	A375_MHC_IP_R1	1	524.2080078125	2	524.263862	1046.51317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.204	1	29.204	28.704	29.704	0								0	0	0	0.13064	1	9105	9105		34.402	4.1769	1		+		34448	28313	25201	25376	33520	33520					-0.008225811013744533
LTEGPHLYY	9	Unmodified	_LTEGPHLYY_					0	0	0		nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	MULTI-MSMS	A375_MHC_IP_R1	1	547.1712036132812	2	546.771657	1091.52876	-0.59321	-0.00032435	0.30687	0.00016779	-0.28634	-0.00015656	546.7717518243127	58.435	0.55871	58.435	58.075	58.633	0					16	10	2	0	0	0	0.015336	1	20975	20975		89.427	43.727	1	2862900			34449	5204	25202	25377	33521	33521					-0.013342497936719155
LTEGPHLYY	9	Unmodified	_LTEGPHLYY_					0	0	0		nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	MULTI-MSMS	A375_MHC_IP_R2	2	547.1710815429688	2	546.771657	1091.52876	-1.1075	-0.00060557	-1.3636	-0.00074557	-2.4711	-0.0013511	546.7718422290994	57.662	0.91788	58.411	57.711	58.629	0.74894					28	17	3	0	0	0	0.17328	1	21796	21796		39.957	1.7818	1	4291700			34450	5204	25202	25377	33522	33522					-0.013342497936719155
LTEHKRLLRLW	11	Unmodified	_LTEHKRLLRLW_					0	0	0		ENST00000468074.1_1_3:136455757-136455820:-|nuORF	ENST00000468074.1_1_3:136455757-136455820:-|nuORF	ENST00000468074.1_1_3:136455757-136455820:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	488.6781921386719	3	488.964777	1463.8725	-0.63678	-0.00031136	-0.75151	-0.00036746	-1.3883	-0.00067882	488.9645549780667	143.04	0.55487	143.04	142.69	143.24	0					13	10	2	0	0	0	1.0014	1	54946	54946		0.08335	0	1	747800			34451	12294	25203	25378	33523	33523					0.159120717048836
LTEHLKNSY	9	Unmodified	_LTEHLKNSY_					0	0	0		ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MULTI-SECPEP	A375_MHC_IP_R2	2	369.2608337402344	3	368.860984	1103.56112	-0.085286	-3.1459E-05	-0.13889	-5.123E-05	-0.22417	-8.2689E-05	368.86086813204577	21.136	0.70921	21.756	21.219	21.928	0.61932					28	13	3	0	0	0	0.71071	1	6620	6620		7.0371	3.45	1	3237500			34452	1537	25204	25379	33524	33524					0.013485376093512969
LTEIISHDP	9	Unmodified	_LTEIISHDP_					0	0	0			REV__ENSG00000080824|ENST00000216281|HSP90AA1	REV__ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-SECPEP	A375_MHC_IP_R1	1	512.1793823242188	2	512.769114	1023.52368	-0.49314	-0.00025287	-0.51198	-0.00026253	-1.0051	-0.00051539	512.768969723354	60.559	0.40777	60.559	60.312	60.719	0					12	7	2	0	0	0	0.16229	1	21778	21778		57.471	15.377	1	1485900	+		34453	16759	25205	25380	33525	33525					0.012854463437065533
LTEIISHDP	9	Unmodified	_LTEIISHDP_					0	0	0			REV__ENSG00000080824|ENST00000216281|HSP90AA1	REV__ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1788940429688	2	512.769114	1023.52368	-1.1164	-0.00057248	0.53426	0.00027395	-0.58218	-0.00029852	512.769289996957	59.78	0.40386	60.527	60.349	60.753	0.74714					12	7	2	0	0	0	0.16229	1	22567	22567		57.471	23.369	1	1932700	+		34454	16759	25205	25380	33526	33526					0.012854463437065533
LTEIKGSVY	9	Unmodified	_LTEIKGSVY_					0	0	0		ENSG00000153975|ENST00000368576|ZUP1;ENST00000471919.1_1_6:116981518-116989864:-|nuORF	ENSG00000153975|ENST00000368576|ZUP1	ENSG00000153975|ENST00000368576|ZUP1	MULTI-SECPEP	A375_MHC_IP_R1	1	504.6572265625	2	505.281857	1008.54916	-0.71796	-0.00036277	0.21994	0.00011113	-0.49802	-0.00025164	505.28194302530716	41.591	0.7143	41.591	41.114	41.828	0					34	13	3	0	0	0	0.50484	1	14249	14249		28.495	4.4739	1	29013000			34455	6052	25206	25381	33527	33527					0.04522920866145341
LTEINIAFL	9	Unmodified	_LTEINIAFL_					0	0	0		ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	516.6795043945312	2	517.30005	1032.58555	-0.51256	-0.00026515	0.11136	5.7607E-05	-0.4012	-0.00020754	517.3000229201647	59.975	0.35667	59.975	59.803	60.159	0					11	6	2	0	0	0	0.38578	1	21617	21617		41.84	12.758	1	923500			34456	4828	25207	25382	33528	33528					0.07055797762859584
LTEITKGWLY	10	Unmodified	_LTEITKGWLY_					0	0	0		nc|ENSG00000139263|Q6UXM1-2|LRIG3;ENSG00000139263|ENST00000320743|LRIG3	nc|ENSG00000139263|Q6UXM1-2|LRIG3	nc|ENSG00000139263|Q6UXM1-2|LRIG3	MULTI-SECPEP	A375_MHC_IP_R1	1	612.73583984375	2	612.337164	1222.65977	-0.36271	-0.0002221	0.023942	1.4661E-05	-0.33877	-0.00020744	612.3370442412805	91.645	0.708	91.645	91.299	92.007	0					39	13	4	0	0	0	0.027638	1	33620	33620		97.741	97.741	1	9310200			34457	5064	25208	25383	33529	33529					0.05735140854380916
LTEITKGWLY	10	Unmodified	_LTEITKGWLY_					0	0	0		nc|ENSG00000139263|Q6UXM1-2|LRIG3;ENSG00000139263|ENST00000320743|LRIG3	nc|ENSG00000139263|Q6UXM1-2|LRIG3	nc|ENSG00000139263|Q6UXM1-2|LRIG3	MULTI-SECPEP	A375_MHC_IP_R2	2	612.7368774414062	2	612.337164	1222.65977	-0.43604	-0.000267	-0.22418	-0.00013727	-0.66022	-0.00040428	612.3368658668365	90.906	0.7598	91.641	91.261	92.021	0.7345					41	14	4	0	0	0	0.011428	1	34570	34570		128.57	71.324	1	7982600			34458	5064	25208	25383	33530	33530					0.05735140854380916
LTEIVEQLRG	10	Unmodified	_LTEIVEQLRG_					0	0	0			REV__ENST00000581618.1_1_17:65346414-65362695:-|nuORF	REV__ENST00000581618.1_1_17:65346414-65362695:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	386.6020812988281	3	386.555672	1156.64519	-0.6749	-0.00026088	0.97913	0.00037849	0.30424	0.0001176	386.5563783625962	33.772	0.25218	34.525	34.399	34.651	0.75225					6	4	2	0	0	0	0.70479	1	12151	12151		6.2344	0	1	855870	+		34459	22267	25209	25384	33531	33531					0.0731306870620756
LTEKANHYY	9	Unmodified	_LTEKANHYY_					0	0	0		nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENST00000478641.5_1_1:1248876-1249468:-|nuORF;ENST00000470030.6_1_1:1248876-1250311:-|nuORF	nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	MULTI-MSMS	A375_MHC_IP_R1	1	570.1799926757812	2	569.780013	1137.54547	-0.20643	-0.00011762	-0.21495	-0.00012248	-0.42138	-0.00024009	569.7798141773744	20.404	0.5607	20.404	20.129	20.69	0					32	10	4	0	0	0	0.0091913	1	5196	5196		185.05	120.81	1	31603000			34460	4074	25210	25385	33532	33532					-0.017797489077111095
LTEKANHYY	9	Unmodified	_LTEKANHYY_					0	0	0		nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENST00000478641.5_1_1:1248876-1249468:-|nuORF;ENST00000470030.6_1_1:1248876-1250311:-|nuORF	nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	MULTI-MSMS	A375_MHC_IP_R1	1	570.1802368164062	2	569.780013	1137.54547	0.090908	5.1798E-05	-0.31457	-0.00017924	-0.22366	-0.00012744	569.7799661212914	22.698	0.70921	22.698	22.164	22.873	0					16	13	2	0	0	0	0.010171	1	6127	6127		96.111	31.875	1	4013200			34461	4074	25210	25385	33533	33533					-0.017797489077111095
LTEKANHYY	9	Unmodified	_LTEKANHYY_					0	0	0		nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENST00000478641.5_1_1:1248876-1249468:-|nuORF;ENST00000470030.6_1_1:1248876-1250311:-|nuORF	nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	MULTI-SECPEP	A375_MHC_IP_R1	1	380.9400634765625	3	380.189101	1137.54547	0.44293	0.0001684	-0.25062	-9.5283E-05	0.19231	7.3114E-05	380.1889527000164	20.409	0.71356	20.409	20.079	20.793	0					47	13	5	0	0	0	0.0575	1	5163	5163		86.332	42.559	1	104680000			34462	4074	25210	25385	33534	33534					-0.017797489077111095
LTEKANHYY	9	Unmodified	_LTEKANHYY_					0	0	0		nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENST00000478641.5_1_1:1248876-1249468:-|nuORF;ENST00000470030.6_1_1:1248876-1250311:-|nuORF	nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	MULTI-MSMS	A375_MHC_IP_R2	2	570.1793212890625	2	569.780013	1137.54547	-0.60058	-0.0003422	-0.0098136	-5.5916E-06	-0.61039	-0.00034779	569.7798904652072	19.256	0.45491	19.859	19.633	20.088	0.60308					27	8	4	0	0	0	0.0091913	1	5877	5877		185.05	120.81	1	24607000			34463	4074	25210	25385	33535	33535					-0.017797489077111095
LTEKANHYY	9	Unmodified	_LTEKANHYY_					0	0	0		nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENST00000478641.5_1_1:1248876-1249468:-|nuORF;ENST00000470030.6_1_1:1248876-1250311:-|nuORF	nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	MULTI-MSMS	A375_MHC_IP_R2	2	380.5890197753906	3	380.189101	1137.54547	-0.32241	-0.00012258	-0.2867	-0.000109	-0.60911	-0.00023158	380.1891833528182	22.224	0.81766	22.843	22.336	23.153	0.61932					28	15	4	0	0	0	0.022213	1	7053	7053		63.961	35.466	1	7344600			34464	4074	25210	25385	33536	33536					-0.017797489077111095
LTEKANHYY	9	Unmodified	_LTEKANHYY_					0	0	0		nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENST00000478641.5_1_1:1248876-1249468:-|nuORF;ENST00000470030.6_1_1:1248876-1250311:-|nuORF	nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	MULTI-SECPEP	A375_MHC_IP_R2	2	380.58905029296875	3	380.189101	1137.54547	-0.25928	-9.8575E-05	0.3668	0.00013945	0.10752	4.0877E-05	380.1891748968322	19.255	0.6566	19.858	19.533	20.19	0.60308					46	12	5	0	0	0	0.13244	1	5861	5861		59.368	36.71	1	79877000			34465	4074	25210	25385	33537	33537					-0.017797489077111095
LTEKGNELY	9	Unmodified	_LTEKGNELY_					0	0	0			REV__ENST00000496081.5_1_6:29910330-29912419:+|nuORF;REV__ENSG00000204525|ENST00000376228|HLA-C	REV__ENSG00000204525|ENST00000376228|HLA-C	MSMS	A375_MHC_IP_R1	1	533.6818237304688	2	533.774396	1065.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.23	1	32.23	31.73	32.73	0								0	0	0	0.13472	1	10395	10395		31.268	2.7815	1		+		34466	22596;22523	25211	25386	33538	33538					0.004094289981594557
LTEKLKLLY	9	Unmodified	_LTEKLKLLY_					0	0	0		ENSG00000109436|ENST00000442267|TBC1D9	ENSG00000109436|ENST00000442267|TBC1D9	ENSG00000109436|ENST00000442267|TBC1D9	MULTI-MSMS	A375_MHC_IP_R1	1	374.6373291015625	3	374.237392	1119.69035	0.36763	0.00013758	-0.5944	-0.00022245	-0.22677	-8.4866E-05	374.2371843492143	63.535	0.46082	63.535	63.326	63.786	0					17	8	3	0	0	0	0.26169	1	22980	22980		25.997	10.459	1	2052400			34467	2868	25212	25387	33539	33539					0.13528919239411152
LTEKLKLLY	9	Unmodified	_LTEKLKLLY_					0	0	0		ENSG00000109436|ENST00000442267|TBC1D9	ENSG00000109436|ENST00000442267|TBC1D9	ENSG00000109436|ENST00000442267|TBC1D9	MULTI-SECPEP	A375_MHC_IP_R2	2	374.9718322753906	3	374.237392	1119.69035	0.29462	0.00011026	-0.18952	-7.0925E-05	0.1051	3.9332E-05	374.5717188948246	62.565	0.40376	63.308	63.13	63.534	0.74263					13	7	2	0	0	0	0.10362	1	23746	23746		59.052	22.657	1	2290500			34468	2868	25212	25387	33540	33540					0.13528919239411152
LTEKLKLLY	9	Unmodified	_LTEKLKLLY_					0	0	0		ENSG00000109436|ENST00000442267|TBC1D9	ENSG00000109436|ENST00000442267|TBC1D9	ENSG00000109436|ENST00000442267|TBC1D9	MULTI-SECPEP	A375_MHC_IP_R2	2	560.6746826171875	2	560.85245	1119.69035	-0.67206	-0.00037693	-0.23627	-0.00013251	-0.90833	-0.00050944	560.851944630608	62.639	0.30393	63.382	63.18	63.484	0.74263					9	5	2	0	0	0	0.61452	1	23712	23712		20.415	5.1661	1	745110			34469	2868	25212	25387	33541	33541					0.13528919239411152
LTEKLNQL	8	Unmodified	_LTEKLNQL_					0	0	0		ENSG00000166046|ENST00000299045|TCP11L2;TCP11L2|p.K340N|1|0.13|ENSG00000166046|chr12:106336091-106336091|A/C|missense_variant	ENSG00000166046|ENST00000299045|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	MSMS	A375_MHC_IP_R2	2	479.695556640625	2	479.782025	957.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.993	1	43.766	43.266	44.266	0.7724								0	0	0	0.16876	1	16007	16007		10.824	0	1				34470	7020	25213	25388	33542	33542					0.06902340585986622
LTELHQQTI	9	Unmodified	_LTELHQQTI_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.R7429Ifs*19|1|0.07|ENSG00000131018|chr6:152214911-152214966|TCTTTCTGTAGTCTGAGAGGAGATCAGAGACCAATGGCGGTTCAGATTCTGCATTC/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-2|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	A375_MHC_IP_R2	2	360.9571228027344	3	361.532868	1081.57677	-0.40151	-0.00014516	-0.26252	-9.4911E-05	-0.66403	-0.00024007	361.5327808303603	51.575	0.50777	52.327	51.966	52.473	0.75225					16	9	2	0	0	0	0.62767	1	19289	19289		11.495	0	1	1158600			34471	4300	25214	25389	33543	33543					0.03924824126374915
LTELIDRFKRW	11	Unmodified	_LTELIDRFKRW_					0	0	0		nc|ENSG00000134602|Q9P289-2|STK26;nc|ENSG00000134602|Q9P289-3|STK26;ENSG00000134602|ENST00000394334|STK26	nc|ENSG00000134602|Q9P289-2|STK26	nc|ENSG00000134602|Q9P289-2|STK26	MULTI-SECPEP	A375_MHC_IP_R1	1	493.6527099609375	3	492.948904	1475.82488	-0.34911	-0.00017209	2.289	0.0011284	1.9399	0.00095627	492.94971500145823	77.411	0.25163	77.411	77.235	77.486	0					5	4	2	0	0	0	0.99883	1	28227	28227		4.7159	2.0847	1	728600			34472	4590	25215	25390	33544	33544					0.10600372714020523
LTELIDRY	8	Unmodified	_LTELIDRY_					0	0	0		ENSG00000102572|ENST00000539966|STK24;nc|ENSG00000102572|Q9Y6E0|STK24;ENST00000495143.5_1_2:242438052-242438731:-|nuORF;ENST00000478403.5_1_2:242436769-242438604:-|nuORF;ENST00000487962.5_1_2:242435079-242438851:-|nuORF;nc|ENSG00000115694|O00506-3|STK25;nc|ENSG00000115694|O00506-2|STK25;ENSG00000115694|ENST00000316586|STK25	ENSG00000102572|ENST00000539966|STK24	ENSG00000102572|ENST00000539966|STK24	MULTI-SECPEP	A375_MHC_IP_R1	1	512.1793823242188	2	511.779482	1021.54441	-0.47348	-0.00024232	-2.2158	-0.001134	-2.6893	-0.0013763	511.77939423570115	60.428	1.2717	60.428	59.854	61.126	0					60	24	4	0	0	0	0.096909	1	21778	21778		110.67	0	1	15353000			34473	2383	25216	25391	33545	33545					0.03450036723370431
LTELKRKERYK	11	Unmodified	_LTELKRKERYK_					0	0	0			REV__nc|ENSG00000082258|O60583-2|CCNT2	REV__nc|ENSG00000082258|O60583-2|CCNT2	MSMS	A375_MHC_IP_R2	2	732.4384155273438	2	732.438275	1462.862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.701	1	19.304	18.804	19.804	0.60308								0	0	0	0.1636	1	5576	5576		0	0	1		+		34474	16789	25217	25392	33546	33546					0.14908044259777853
LTELPDWSY	9	Unmodified	_LTELPDWSY_					0	0	0		ENST00000557543.5_1_14:23299153-23299471:+|nuORF;ENST00000311892.10_1_14:23299153-23300177:+|nuORF;ENST00000553482.5_1_14:23299112-23299471:+|nuORF;nc|ENSG00000172590|Q86TS9-4|MRPL52;ENSG00000172590|ENST00000397496|MRPL52;nc|ENSG00000172590|Q86TS9|MRPL52	ENST00000557543.5_1_14:23299153-23299471:+|nuORF	ENST00000557543.5_1_14:23299153-23299471:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	562.668212890625	2	562.268947	1122.52334	-0.21343	-0.00012	-0.1078	-6.061E-05	-0.32122	-0.00018061	562.2688040662443	111.8	1.8306	111.8	111.31	113.14	0					99	35	4	0	0	0	0.0022313	2	40910	40910;41109		141.83	93.481	1	103700000			34475	7724	25218	25393	33547;33548	33547					-0.033019733761420866
LTELPDWSY	9	Unmodified	_LTELPDWSY_					0	0	0		ENST00000557543.5_1_14:23299153-23299471:+|nuORF;ENST00000311892.10_1_14:23299153-23300177:+|nuORF;ENST00000553482.5_1_14:23299112-23299471:+|nuORF;nc|ENSG00000172590|Q86TS9-4|MRPL52;ENSG00000172590|ENST00000397496|MRPL52;nc|ENSG00000172590|Q86TS9|MRPL52	ENST00000557543.5_1_14:23299153-23299471:+|nuORF	ENST00000557543.5_1_14:23299153-23299471:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1123.0357666015625	1	1123.53062	1122.52334	0.30043	0.00033755	-0.73378	-0.00082443	-0.43335	-0.00048688	1123.5306092329245	111.85	2.5966	111.85	110.8	113.4	0					158	50	5	0	0	0	4.3535E-05	1	40996	40996		197.17	122.74	1	249420000			34476	7724	25218	25393	33549	33549					-0.033019733761420866
LTELPDWSY	9	Unmodified	_LTELPDWSY_					0	0	0		ENST00000557543.5_1_14:23299153-23299471:+|nuORF;ENST00000311892.10_1_14:23299153-23300177:+|nuORF;ENST00000553482.5_1_14:23299112-23299471:+|nuORF;nc|ENSG00000172590|Q86TS9-4|MRPL52;ENSG00000172590|ENST00000397496|MRPL52;nc|ENSG00000172590|Q86TS9|MRPL52	ENST00000557543.5_1_14:23299153-23299471:+|nuORF	ENST00000557543.5_1_14:23299153-23299471:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1123.367431640625	1	1123.53062	1122.52334	0.3019	0.00033919	-0.45827	-0.00051488	-0.15638	-0.00017569	1123.5305987784106	111.19	2.3499	111.93	110.73	113.08	0.73692					92	45	3	0	0	0	0.009271	3	41808	41802;41808;42309		103.75	65.774	1	235360000			34477	7724	25218	25393	33550;33551;33552	33551					-0.033019733761420866
LTELPDWSY	9	Unmodified	_LTELPDWSY_					0	0	0		ENST00000557543.5_1_14:23299153-23299471:+|nuORF;ENST00000311892.10_1_14:23299153-23300177:+|nuORF;ENST00000553482.5_1_14:23299112-23299471:+|nuORF;nc|ENSG00000172590|Q86TS9-4|MRPL52;ENSG00000172590|ENST00000397496|MRPL52;nc|ENSG00000172590|Q86TS9|MRPL52	ENST00000557543.5_1_14:23299153-23299471:+|nuORF	ENST00000557543.5_1_14:23299153-23299471:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	562.6683959960938	2	562.268947	1122.52334	-0.38595	-0.00021701	0.066444	3.736E-05	-0.31951	-0.00017965	562.2689256823711	111.16	2.1962	111.89	111.45	113.64	0.73691					102	42	4	0	0	0	0.0016247	1	42041	42041		147.83	101.81	1	135840000			34478	7724	25218	25393	33553	33553					-0.033019733761420866
LTELQRQRL	9	Unmodified	_LTELQRQRL_					0	0	0		nc|ENSG00000092098|Q96EP0-3|RNF31;ENSG00000092098|ENST00000324103|RNF31	nc|ENSG00000092098|Q96EP0-3|RNF31	nc|ENSG00000092098|Q96EP0-3|RNF31	MULTI-SECPEP	A375_MHC_IP_R1	1	578.6634521484375	2	578.843479	1155.67241	-0.32515	-0.00018821	-2.2179	-0.0012838	-2.5431	-0.001472	579.3451133996917	83.892	0.45526	83.892	83.786	84.241	0					12	8	2	0	0	0	0.62767	1	30745	30745		11.64	0	1	817550			34479	1994	25219	25394	33554	33554					0.10079597037270105
LTELRELSL	9	Unmodified	_LTELRELSL_					0	0	0		nc|ENSG00000172061|Q8TF66-2|LRRC15;ENSG00000172061|ENST00000347624|LRRC15;LRRC15|p.H349Y|1|0.22|ENSG00000172061|chr3:194359999-194359999|G/A|missense_variant	nc|ENSG00000172061|Q8TF66-2|LRRC15	nc|ENSG00000172061|Q8TF66-2|LRRC15	MULTI-MSMS	A375_MHC_IP_R2	2	537.7129516601562	2	537.313689	1072.61282	-0.83143	-0.00044674	-0.36945	-0.00019851	-1.2009	-0.00064525	537.3136441136418	78.45	0.55861	79.195	78.828	79.387	0.74474					16	10	2	0	0	0	0.082375	1	29751	29751		53.833	2.203	1	3120700			34480	7677	25220	25395	33555	33555					0.07942281303235177
LTEMVHFI	8	Unmodified	_LTEMVHFI_					0	0	0		ENSG00000184860|ENST00000328945|SDR42E1	ENSG00000184860|ENST00000328945|SDR42E1	ENSG00000184860|ENST00000328945|SDR42E1	MULTI-SECPEP	A375_MHC_IP_R1	1	494.6352233886719	2	495.259871	988.505189	-0.40821	-0.00020217	0.089909	4.4529E-05	-0.3183	-0.00015764	495.25979603120703	31.308	0.50693	31.308	31.109	31.616	0					12	9	2	0	0	0	0.91495	1	10073	10073		18.135	0	1	1269400			34481	8614	25221	25396	33556	33556					0.010476131681571133
LTENKHSF	8	Unmodified	_LTENKHSF_					0	0	0		ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	MULTI-SECPEP	A375_MHC_IP_R2	2	487.4795227050781	2	488.248349	974.482145	-0.48435	-0.00023648	-1.6991	-0.00082959	-2.1835	-0.0010661	488.24718470531485	42.983	0.7601	43.755	43.319	44.079	0.7724					25	14	3	0	0	0	0.93416	1	15932	15932		14.582	5.9884	1	4454000			34482	6973	25222	25397	33557	33557					-0.006116896249523052
LTENPWRCDCA	11	Unmodified	_LTENPWRCDCA_					0	0	0		nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	MULTI-MSMS	A375_MHC_IP_R2	2	654.7467041015625	2	654.278997	1306.54344	-0.72732	-0.00047587	1.6639	0.0010887	0.93658	0.00061278	654.2796037532155	90.938	0.40496	91.673	91.463	91.868	0.7345					11	7	2	0	0	0	0.72728	1	34578	34578		11.495	3.8858	1	1944400			34483	14922	25223	25398	33558	33558					-0.09756868979457067
LTENRIEDY	9	Unmodified	_LTENRIEDY_					0	0	0		tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1	tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1	tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1	MSMS	A375_MHC_IP_R2	2	576.7047119140625	2	576.78021	1151.54587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.31	1	112.05	111.55	112.55	0.73692								0	0	0	0.1521	1	41973	41973		18.135	1.1927	1				34484	29600	25224	25399	33559	33559					-0.023843739785206708
LTEPAARR	8	Unmodified	_LTEPAARR_					0	0	0		nc|ENSG00000159147|Q9NYP3-2|DONSON;nc|ENSG00000159147|Q9NYP3-3|DONSON;ENSG00000159147|ENST00000303071|DONSON	nc|ENSG00000159147|Q9NYP3-2|DONSON	nc|ENSG00000159147|Q9NYP3-2|DONSON	MULTI-MSMS	A375_MHC_IP_R1	1	457.6643981933594	2	457.264333	912.514114	-0.0093697	-4.2844E-06	0.19438	8.8882E-05	0.18501	8.4597E-05	457.26432263275507	109.18	6.309	109.18	107.95	114.26	0					351	123	3	0	0	0	0.77123	1	41037	41037		14.582	14.582	1	34386000			34485	6352	25225	25400	33560	33560					0.054357228488470355
LTEPAARR	8	Unmodified	_LTEPAARR_					0	0	0		nc|ENSG00000159147|Q9NYP3-2|DONSON;nc|ENSG00000159147|Q9NYP3-3|DONSON;ENSG00000159147|ENST00000303071|DONSON	nc|ENSG00000159147|Q9NYP3-2|DONSON	nc|ENSG00000159147|Q9NYP3-2|DONSON	MULTI-MSMS	A375_MHC_IP_R2	2	457.66424560546875	2	457.264333	912.514114	-0.25959	-0.0001187	0.046537	2.128E-05	-0.21305	-9.742E-05	457.2642448379316	104.53	4.78	105.29	103.48	108.26	0.76308					181	93	3	0	0	0	0.77603	1	39284	39284		9.3474	9.3474	1	10426000			34486	6352	25225	25400	33561	33561					0.054357228488470355
LTEPAARR	8	Unmodified	_LTEPAARR_					0	0	0		nc|ENSG00000159147|Q9NYP3-2|DONSON;nc|ENSG00000159147|Q9NYP3-3|DONSON;ENSG00000159147|ENST00000303071|DONSON	nc|ENSG00000159147|Q9NYP3-2|DONSON	nc|ENSG00000159147|Q9NYP3-2|DONSON	MULTI-MSMS	A375_MHC_IP_R2	2	457.6639709472656	2	457.264333	912.514114	-0.16701	-7.6366E-05	0.16619	7.5991E-05	-0.00081954	-3.7474E-07	457.2643102122108	108.83	6.2759	109.57	108.24	114.52	0.74683					354	122	3	0	0	0	0.77603	1	42116	42116		9.3474	9.3474	1	33927000			34487	6352	25225	25400	33562	33562					0.054357228488470355
LTEPKEKP	8	Unmodified	_LTEPKEKP_					0	0	0			REV__GEMIN5|p.L1343Efs*7|1|0.2|ENSG00000082516|chr5:154891475-154891476|AA/-|frameshift_variant	REV__GEMIN5|p.L1343Efs*7|1|0.2|ENSG00000082516|chr5:154891475-154891476|AA/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	471.4908447265625	2	471.26875	940.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.848	1	41.848	41.348	42.348	0								0	0	0	0.16876	1	14470	14470		15.847	1.0089	1		+		34488	16793	25226	25401	33563	33563					0.05030651694664812
LTEPTGLLY	9	Unmodified	_LTEPTGLLY_					0	0	0		SEMA4C|p.D154Mfs*48|1|0.2|ENSG00000168758|chr2:96865498-96865498|C/-|frameshift_variant;ENSG00000168758|ENST00000305476|SEMA4C	SEMA4C|p.D154Mfs*48|1|0.2|ENSG00000168758|chr2:96865498-96865498|C/-|frameshift_variant	SEMA4C|p.D154Mfs*48|1|0.2|ENSG00000168758|chr2:96865498-96865498|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	503.7030029296875	2	503.776408	1005.53826	-0.37264	-0.00018773	0.36598	0.00018437	-0.0066583	-3.3543E-06	503.77643287871444	99.092	1.2656	99.092	98.659	99.925	0					47	24	4	0	0	0	0.026461	1	36401	36401		77.984	24.409	1	14687000			34489	7339	25227	25402	33564	33564					0.03571518491844472
LTEPTGLLY	9	Unmodified	_LTEPTGLLY_					0	0	0		SEMA4C|p.D154Mfs*48|1|0.2|ENSG00000168758|chr2:96865498-96865498|C/-|frameshift_variant;ENSG00000168758|ENST00000305476|SEMA4C	SEMA4C|p.D154Mfs*48|1|0.2|ENSG00000168758|chr2:96865498-96865498|C/-|frameshift_variant	SEMA4C|p.D154Mfs*48|1|0.2|ENSG00000168758|chr2:96865498-96865498|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	503.7026062011719	2	503.776408	1005.53826	-0.65014	-0.00032752	0.74784	0.00037674	0.097705	4.9222E-05	503.77667019397796	98.279	1.3733	99.039	98.335	99.708	0.75977					59	26	4	0	0	0	0.1478	1	37211	37211		42.095	11.87	1	16745000			34490	7339	25227	25402	33565	33565					0.03571518491844472
LTEQAELKY	9	Unmodified	_LTEQAELKY_					0	0	0			REV__ENSG00000173905|ENST00000470487|GOLIM4	REV__ENSG00000173905|ENST00000470487|GOLIM4	MULTI-MSMS	A375_MHC_IP_R1	1	547.224365234375	2	547.790047	1093.56554	-0.47308	-0.00025915	-2.3785	-0.0013029	-2.8516	-0.0015621	547.7881704392108	51.055	0.35428	51.055	50.864	51.219	0					8	6	2	0	0	0	0.55818	1	18133	18133		16.942	0	1	723780	+		34491	21254	25228	25403	33566	33566					0.022500020322468117
LTEQAMGTSS	10	Unmodified	_LTEQAMGTSS_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;ENST00000509849.5_1_5:37125538-37138928:-|nuORF	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	A375_MHC_IP_R1	1	513.1683349609375	2	512.734414	1023.45428	-0.51271	-0.00026288	-0.19921	-0.00010214	-0.71191	-0.00036502	512.7340886537096	60.92	0.76458	60.92	60.514	61.279	0					30	14	3	0	0	0	0.62155	1	21805	21805		19.257	3.4098	1	2971600			34492	14846	25229	25404	33567	33567					-0.05651380667336525
LTEQAVVAL	9	Unmodified	_LTEQAVVAL_					0	0	0		RHBDD3|p.P338L|1|0.43|ENSG00000100263|chr22:29260208-29260208|G/A|missense_variant	RHBDD3|p.P338L|1|0.43|ENSG00000100263|chr22:29260208-29260208|G/A|missense_variant	RHBDD3|p.P338L|1|0.43|ENSG00000100263|chr22:29260208-29260208|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	472.6767578125	2	472.276575	942.538597	-0.77955	-0.00036816	1.0109	0.00047743	0.23137	0.00010927	472.2768276583244	143.71	0.49358	143.71	143.54	144.03	0					11	9	2	0	0	0	0.72985	1	55130	55130		4.3292	0.38484	1	3984800			34493	29076	25230	25405	33568	33568					0.06502938211713172
LTEQDLQLY	9	Unmodified	_LTEQDLQLY_					0	0	0		ENSG00000096968|ENST00000381652|JAK2;JAK2|p.E577Sfs*8|1|0.71|ENSG00000096968|chr9:5072578-5072579|AG/-|frameshift_variant;JAK2|p.S339Afs*4|1|0.28|ENSG00000096968|chr9:5055745-5055745|A/-|frameshift_variant	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	MULTI-SECPEP	A375_MHC_IP_R1	1	562.1875	2	561.787504	1121.56045	-0.67275	-0.00037794	0.50795	0.00028536	-0.16481	-9.2586E-05	561.7876562237709	66.572	0.56046	66.572	66.326	66.887	0					24	10	3	0	0	0	0.16764	1	24107	24107		57.471	13.613	1	3668500			34494	2064	25231	25406	33569	33569					0.004536981696446674
LTEQDNLEI	9	Unmodified	_LTEQDNLEI_					0	0	0			REV__tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	REV__tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	MSMS	A375_MHC_IP_R2	2	537.6864624023438	2	537.769311	1073.52407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.56	1	101.32	100.82	101.82	0.76278								0	0	0	0.14905	1	38127	38127		23.148	0	1		+		34495	28413	25232	25407	33570	33570					-0.009751787271170542
LTEQFNEDSG	10	Unmodified	_LTEQFNEDSG_					0	0	0		nc|ENSG00000292277|Q9UJ98|STAG3;ENSG00000066923|ENST00000615138|STAG3	nc|ENSG00000292277|Q9UJ98|STAG3	nc|ENSG00000292277|Q9UJ98|STAG3	MULTI-MSMS	A375_MHC_IP_R1	1	570.6458129882812	2	570.2462	1138.47785	-0.046558	-2.6549E-05	-0.60168	-0.0003431	-0.64823	-0.00036965	570.2459082826966	112.02	0.71306	112.02	111.67	112.38	0					19	13	2	0	0	0	0.70329	1	41081	41081		10.824	1.4408	1	1733800			34496	1422	25233	25408	33571	33571					-0.08585243629204342
LTEQKITSKV	10	Unmodified	_LTEQKITSKV_					0	0	0		ENST00000554574.1_1_14:91942052-91948315:-|nuORF	ENST00000554574.1_1_14:91942052-91948315:-|nuORF	ENST00000554574.1_1_14:91942052-91948315:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	573.189453125	2	573.840071	1145.66559	-0.12596	-7.2282E-05	0.98418	0.00056476	0.85821	0.00049248	573.8404785008086	56.117	0.45426	56.117	55.841	56.295	0					13	8	2	0	0	0	0.72086	1	19995	19995		24.021	2.4836	1	3438900			34497	13422	25234	25409	33572	33572					0.09858239366008092
LTEQLRTEW	9	Unmodified	_LTEQLRTEW_					0	0	0			REV__ENSG00000148384|ENST00000371712|INPP5E	REV__ENSG00000148384|ENST00000371712|INPP5E	MULTI-SECPEP	A375_MHC_IP_R2	2	588.1212768554688	2	588.306395	1174.59824	-0.69151	-0.00040682	0.45044	0.000265	-0.24107	-0.00014182	588.3066159390892	65.408	0.50732	66.147	65.867	66.375	0.73811					15	9	2	0	0	0	0.46121	1	24759	24759		34.402	9.0024	1	2994200	+		34498	19627	25235	25410	33573	33573					0.017922091551099584
LTEQNGDNY	9	Unmodified	_LTEQNGDNY_					0	0	0			REV__nc|ENSG00000154556|O94875-11|SORBS2	REV__nc|ENSG00000154556|O94875-11|SORBS2	MULTI-SECPEP	A375_MHC_IP_R2	2	526.6552734375	2	527.22781	1052.44107	-0.77289	-0.00040749	-2.0831	-0.0010982	-2.856	-0.0015057	527.2269722350621	60.373	0.35791	61.118	61.006	61.364	0.74503					9	6	2	0	0	0	0.50702	1	22890	22890		32.305	15.193	1	836420	+		34499	27299	25236	25411	33574	33574					-0.08305495455101664
LTEQQKALY	9	Unmodified	_LTEQQKALY_					0	0	0		ENSG00000143157|ENST00000367876|POGK	ENSG00000143157|ENST00000367876|POGK	ENSG00000143157|ENST00000367876|POGK	MULTI-MSMS	A375_MHC_IP_R1	1	547.6976928710938	2	547.298039	1092.58152	-0.56579	-0.00030966	0.73518	0.00040236	0.16939	9.2704E-05	547.2977730226	31.916	0.5636	31.916	31.718	32.282	0					31	10	4	0	0	0	0.0014143	1	10267	10267		149.91	61.01	1	6538900			34500	5351	25237	25412	33575	33575					0.0389370826915183
LTEQQKALY	9	Unmodified	_LTEQQKALY_					0	0	0		ENSG00000143157|ENST00000367876|POGK	ENSG00000143157|ENST00000367876|POGK	ENSG00000143157|ENST00000367876|POGK	MULTI-MSMS	A375_MHC_IP_R2	2	547.697265625	2	547.298039	1092.58152	-0.82004	-0.00044881	0.065191	3.5679E-05	-0.75485	-0.00041313	547.2978923528806	31.281	0.46058	32	31.719	32.18	0.71857					18	8	3	0	0	0	0.0078915	1	11044	11044		168.66	87.046	1	6250900			34501	5351	25237	25412	33576	33576					0.0389370826915183
LTEQRALLY	9	Unmodified	_LTEQRALLY_					0	0	0		ENSG00000196663|ENST00000359520|TECPR2;nc|ENSG00000196663|O15040-2|TECPR2	ENSG00000196663|ENST00000359520|TECPR2	ENSG00000196663|ENST00000359520|TECPR2	MULTI-MSMS	A375_MHC_IP_R1	1	554.2129516601562	2	553.813856	1105.61316	-0.41347	-0.00022899	-0.29676	-0.00016435	-0.71023	-0.00039333	553.8135466453114	54.389	0.45387	54.389	54.113	54.567	0					18	8	3	0	0	0	0.035419	1	19413	19413		70.332	14.155	1	6486800			34502	9072	25238	25413	33577	33577					0.06457701023100526
LTEQRALLY	9	Unmodified	_LTEQRALLY_					0	0	0		ENSG00000196663|ENST00000359520|TECPR2;nc|ENSG00000196663|O15040-2|TECPR2	ENSG00000196663|ENST00000359520|TECPR2	ENSG00000196663|ENST00000359520|TECPR2	MULTI-MSMS	A375_MHC_IP_R2	2	554.212646484375	2	553.813856	1105.61316	-1.305	-0.00072271	-0.16813	-9.3113E-05	-1.4731	-0.00081582	553.8136513557358	53.576	0.51118	54.327	54.046	54.557	0.75105					17	9	2	0	0	0	0.0090297	1	20194	20194		99.755	27.833	1	5322200			34503	9072	25238	25413	33578	33578					0.06457701023100526
LTEQRERF	8	Unmodified	_LTEQRERF_					0	0	0			REV__ENSG00000120278|ENST00000696526|PLEKHG1	REV__ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-SECPEP	A375_MHC_IP_R2	2	540.1853637695312	2	539.78563	1077.55671	-0.64417	-0.00034771	-0.031782	-1.7155E-05	-0.67595	-0.00036487	539.7855405902858	43.829	0.4529	44.598	44.38	44.833	0.7691					14	8	2	0	0	0	0.86263	1	16364	16364		34.102	3.399	1	1876200	+		34504	18119	25239	25414	33579	33579					0.02103073186435722
LTEQWPYRT	9	Unmodified	_LTEQWPYRT_					0	0	0		nc|ENSG00000134313|Q9ULH0-3|KIDINS220;nc|ENSG00000134313|Q9ULH0-2|KIDINS220;ENST00000488729.5_1_2:8870852-8965899:-|nuORF;nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220	nc|ENSG00000134313|Q9ULH0-3|KIDINS220	nc|ENSG00000134313|Q9ULH0-3|KIDINS220	MULTI-SECPEP	A375_MHC_IP_R2	2	597.6084594726562	2	597.301113	1192.58767	-0.40741	-0.00024335	2.0889	0.0012477	1.6815	0.0010043	597.3020875236916	85.341	0.81432	86.077	85.677	86.492	0.73602					19	15	2	0	0	0	0.65246	1	32323	32323		10.824	4.1008	1	2371700			34505	4565	25240	25415	33580	33580					-0.00091773499343617
LTEQYNEQY	9	Unmodified	_LTEQYNEQY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	A375_MHC_IP_R1	1	594.6476440429688	2	594.264393	1186.51423	-0.67807	-0.00040295	0.60692	0.00036067	-0.071154	-4.2284E-05	594.2647690782553	41.596	2.2361	41.596	41.215	43.451	0					113	43	5	0	0	0	0.0028773	2	14316	14316;14515		193.29	125.21	1	344930000			34506	7843	25241	25416	33581;33582	33581					-0.07156366732488095
LTEQYNEQY	9	Unmodified	_LTEQYNEQY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	A375_MHC_IP_R1	1	1188.42236328125	1	1187.52151	1186.51423	-0.3195	-0.00037942	0.5842	0.00069375	0.2647	0.00031433	1187.522097561173	41.646	0.9675	41.646	41.266	42.233	0					53	18	4	0	0	0	1.3235000000000002E-25	1	14386	14386		258.17	176.28	1	77131000			34507	7843	25241	25416	33583	33583					-0.07156366732488095
LTEQYNEQY	9	Unmodified	_LTEQYNEQY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	A375_MHC_IP_R2	2	1188.4232177734375	1	1187.52151	1186.51423	-0.073585	-8.7384E-05	-0.046075	-5.4716E-05	-0.11966	-0.0001421	1187.52136497273	41.037	0.9125	41.812	41.438	42.35	0.77451					57	17	5	0	0	0	1.2418E-35	1	15225	15225		275.29	171.54	1	71840000			34508	7843	25241	25416	33584	33584					-0.07156366732488095
LTEQYNEQY	9	Unmodified	_LTEQYNEQY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	A375_MHC_IP_R2	2	594.664306640625	2	594.264393	1186.51423	-0.81143	-0.00048221	0.41185	0.00024475	-0.39958	-0.00023745	594.2646462824515	41.045	1.9358	41.82	41.335	43.27	0.77451					112	37	5	0	0	0	0.0028773	1	15340	15340		193.29	125.21	1	282980000			34509	7843	25241	25416	33585	33585					-0.07156366732488095
LTERGYSF	8	Unmodified	_LTERGYSF_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000570019.1_1_15:34666200-34666557:-|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000436287.1_1_1:224051789-224052101:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000159251|ENST00000290378|ACTC1;ENST00000436287.1_1_1:224051789-224052101:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	MSMS	A375_MHC_IP_R1	1	486.693115234375	2	486.742899	971.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.764	1	43.764	43.264	44.264	0								0	0	0	0.16876	1	15234	15234		26.268	0.86883	1				34510	1615;5418;11926	25242	25417	33586	33586					-0.01563091999230437
LTERGYSF	8	Unmodified	_LTERGYSF_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000570019.1_1_15:34666200-34666557:-|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000436287.1_1_1:224051789-224052101:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000159251|ENST00000290378|ACTC1;ENST00000436287.1_1_1:224051789-224052101:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	A375_MHC_IP_R2	2	486.6922912597656	2	486.742899	971.471246	-0.51232	-0.00024937	-1.7001	-0.00082753	-2.2125	-0.0010769	486.7428174245779	42.913	1.2647	43.685	43.268	44.533	0.7724					42	24	3	0	0	0	0.23934	2	15876	15876;15888		63.961	24.003	1	12050000			34511	1615;5418;11926	25242	25417	33587;33588	33587					-0.01563091999230437
LTESAIDPN	9	Unmodified	_LTESAIDPN_					0	0	0			REV__ENSG00000110237|ENST00000263674|ARHGEF17	REV__ENSG00000110237|ENST00000263674|ARHGEF17	MSMS	A375_MHC_IP_R1	1	480.1639404296875	2	480.237647	958.460741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.789	1	97.789	97.289	98.289	0								0	0	0	0.13673	1	35926	35926		30.637	2.1497	1		+		34512	17621	25243	25418	33589	33589					-0.02015119444342872
LTESELEQF	9	Unmodified	_LTESELEQF_					0	0	0			REV__ENSG00000014257|ENST00000336375|ACP3	REV__ENSG00000014257|ENST00000336375|ACP3	MULTI-SECPEP	A375_MHC_IP_R2	2	365.62060546875	3	365.845	1094.51317	-0.19748	-7.2247E-05	1.1753	0.00042997	0.9778	0.00035772	366.17967249713587	28.185	0.30406	28.864	28.706	29.01	0.67857					8	5	2	0	0	0	0.78351	1	9761	9761		5.2969	5.2969	1	2536000	+		34513	16242	25244	25419	33590	33590					-0.030305811013704442
LTESGVPEHD	10	Unmodified	_LTESGVPEHD_					0	0	0			REV__PCDH9|p.G1077E|2|0.28|ENSG00000184226|chr13:66631320-66631320|C/T|missense_variant	REV__PCDH9|p.G1077E|2|0.28|ENSG00000184226|chr13:66631320-66631320|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	543.7035522460938	2	542.251286	1082.48802	-0.54651	-0.00029635	-0.3515	-0.0001906	-0.89801	-0.00048695	542.2510686376692	102.05	1.0615	102.05	101.65	102.71	0					53	20	4	0	0	0	0.6806	1	37462	37462		14.838	2.3067	1	8765100	+		34514	27728	25245	25420	33591	33591					-0.04992635903954579
LTESIWAI	8	Unmodified	_LTESIWAI_					0	0	0			REV__ENSG00000164163|ENST00000296577|ABCE1	REV__ENSG00000164163|ENST00000296577|ABCE1	MULTI-MSMS	A375_MHC_IP_R1	1	935.4080810546875	1	932.50876	931.501483	-0.053036	-4.9456E-05	-0.24558	-0.00022901	-0.29862	-0.00027846	932.5086605984615	93.904	0.96417	93.904	93.584	94.548	0					53	18	4	0	0	0	0.70843	1	34510	34510		32.117	1.8922	1	26214000	+		34515	20459	25246	25421	33592	33592					0.032992666659424685
LTESIWAI	8	Unmodified	_LTESIWAI_					0	0	0			REV__ENSG00000164163|ENST00000296577|ABCE1	REV__ENSG00000164163|ENST00000296577|ABCE1	MULTI-MSMS	A375_MHC_IP_R2	2	935.4095458984375	1	932.50876	931.501483	-0.16088	-0.00015002	0.47662	0.00044445	0.31574	0.00029443	932.5093073439842	93.138	0.91185	93.877	93.546	94.458	0.73901					48	17	4	0	0	0	0.70843	1	35451	35451		32.117	0	1	32653000	+		34516	20459	25246	25421	33593	33593					0.032992666659424685
LTESIWAI	8	Unmodified	_LTESIWAI_					0	0	0			REV__ENSG00000164163|ENST00000296577|ABCE1	REV__ENSG00000164163|ENST00000296577|ABCE1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	932.50876	931.501483	-0.16088	-0.00015002	0.47662	0.00044445	0.31574	0.00029443	932.5093073439842	93.138	0.91185	93.877	93.546	94.458	0.73901	-0.013387	0.00041238	NaN	32.117	48	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32653000	+		34517	20459	25246	25421							0.032992666659424685
LTESRVQVW	9	Unmodified	_LTESRVQVW_					0	0	0		ENSG00000171540|ENST00000306422|OTP	ENSG00000171540|ENST00000306422|OTP	ENSG00000171540|ENST00000306422|OTP	MULTI-MSMS	A375_MHC_IP_R2	2	372.9365234375	3	373.204862	1116.59276	0.40166	0.0001499	0.07971	2.9748E-05	0.48137	0.00017965	373.2049022313343	27.216	0.56258	27.894	27.484	28.047	0.67857					14	10	2	0	0	0	0.75274	1	9221	9221		2.2828	0.19677	1	5043200			34518	7614	25247	25422	33594	33594					0.03912530363299993
LTESRVQVW	9	Unmodified	_LTESRVQVW_					0	0	0		ENSG00000171540|ENST00000306422|OTP	ENSG00000171540|ENST00000306422|OTP	ENSG00000171540|ENST00000306422|OTP	MULTI-MATCH	A375_MHC_IP_R1	1		3	373.204862	1116.59276	0.12979	4.8437E-05	0.66509	0.00024821	0.79488	0.00029665	373.20501291815543	27.881	0.5037	27.881	27.533	28.037	0	-0.0065172	0.00033976	NaN	2.2828	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4767300			34519	7614	25247	25422							0.03912530363299993
LTESSAILIY	10	Unmodified	_LTESSAILIY_					0	0	0		nc|ENSG00000133433|P0CG29|GSTT2;ENSG00000133433|ENST00000290765|GSTT2B	nc|ENSG00000133433|P0CG29|GSTT2	nc|ENSG00000133433|P0CG29|GSTT2	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1741943359375	2	555.308072	1108.60159	-0.9666	-0.00053676	-0.59572	-0.00033081	-1.5623	-0.00086757	555.3075197060044	65.768	0.60995	66.506	66.172	66.782	0.73812					23	11	3	0	0	0	0.79749	1	24936	24936		39.957	13.074	1	5024600			34520	4510	25248	25423	33595	33595					0.051634592090977094
LTESSAILIY	10	Unmodified	_LTESSAILIY_					0	0	0		nc|ENSG00000133433|P0CG29|GSTT2;ENSG00000133433|ENST00000290765|GSTT2B	nc|ENSG00000133433|P0CG29|GSTT2	nc|ENSG00000133433|P0CG29|GSTT2	MULTI-MATCH	A375_MHC_IP_R1	1		2	555.308072	1108.60159	-0.77851	-0.00043232	-0.35882	-0.00019926	-1.1373	-0.00063157	555.3077474321932	66.606	0.56195	66.606	66.428	66.99	0	0.050229	9.7835E-05	NaN	39.957	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4436100			34521	4510	25248	25423							0.051634592090977094
LTETEDWLY	9	Unmodified	_LTETEDWLY_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-SECPEP	A375_MHC_IP_R1	1	585.6715087890625	2	585.271687	1168.52882	-0.17064	-9.9869E-05	0.23112	0.00013527	0.060484	3.54E-05	585.2717667347513	105.16	0.40619	105.16	104.89	105.3	0					15	7	3	0	0	0	0.24324	1	38622	38622		60.39	53.666	1	1037200			34522	3678	25249	25424	33596	33596					-0.048702945843160705
LTETEDWLY	9	Unmodified	_LTETEDWLY_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MATCH	A375_MHC_IP_R2	2		2	585.271687	1168.52882	-0.44731	-0.0002618	0.7351	0.00043023	0.28779	0.00016844	585.7733871156472	104.43	0.51038	105.19	104.85	105.36	0.76308	0.013185	0.00036593	NaN	60.39	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1801900			34523	3678	25249	25424							-0.048702945843160705
LTETIYKNYY	10	Unmodified	_LTETIYKNYY_					0	0	0		ENSG00000146834|ENST00000310512|MEPCE;nc|ENSG00000289690|Q7L2J0-2|MEPCE	ENSG00000146834|ENST00000310512|MEPCE	ENSG00000146834|ENST00000310512|MEPCE	MULTI-SECPEP	A375_MHC_IP_R1	1	654.7295532226562	2	654.329536	1306.64452	-0.40885	-0.00026752	0.083279	5.4492E-05	-0.32557	-0.00021303	654.3294869057236	57.488	0.45737	57.488	57.313	57.771	0					19	8	3	0	0	0	0.033308	1	20637	20637		152.89	67.244	1	3357600			34524	5641	25250	25425	33597	33597					0.0034622926652900787
LTETIYKNYY	10	Unmodified	_LTETIYKNYY_					0	0	0		ENSG00000146834|ENST00000310512|MEPCE;nc|ENSG00000289690|Q7L2J0-2|MEPCE	ENSG00000146834|ENST00000310512|MEPCE	ENSG00000146834|ENST00000310512|MEPCE	MULTI-MSMS	A375_MHC_IP_R2	2	655.231201171875	2	654.329536	1306.64452	-1.2751	-0.00083435	0.64032	0.00041898	-0.63481	-0.00041537	654.329614775626	56.847	0.40709	57.597	57.408	57.815	0.75014					18	7	3	0	0	0	0.092645	1	21501	21501		65.235	6.5562	1	4171700			34525	5641	25250	25425	33598	33598					0.0034622926652900787
LTETQRLY	8	Unmodified	_LTETQRLY_					0	0	0			REV__nc|ENSG00000181722|Q9HC78-2|ZBTB20	REV__nc|ENSG00000181722|Q9HC78-2|ZBTB20	MULTI-SECPEP	A375_MHC_IP_R2	2	512.6769409179688	2	512.277106	1022.53966	-1.1396	-0.00058379	3.6902	0.0018904	2.5506	0.0013066	512.2792258787704	59.628	1.0099	60.375	59.845	60.855	0.74714					36	19	2	0	0	0	0.46955	1	22528	22528		65.235	11.918	1	7662900	+		34526	21663	25251	25426	33599	33599					0.029291525806002028
LTETVDPMTVT	11	Unmodified	_LTETVDPMTVT_					0	0	0			REV__nc|ENSG00000134452|Q8NFZ0-2|FBH1	REV__nc|ENSG00000134452|Q8NFZ0-2|FBH1	MSMS	A375_MHC_IP_R1	1	603.8592529296875	2	603.799754	1205.58495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.93	1	106.93	106.43	107.43	0								0	0	0	0.15541	1	39245	39245		17.113	2.2746	1		+		34527	27235	25252	25427	33600	33600					-0.009614097391931864
LTEVDNYHFY	10	Unmodified	_LTEVDNYHFY_					0	0	0		NFE2L2|p.Q556Tfs*15|1|0.32|ENSG00000116044|chr2:177230937-177230938|-/T|frameshift_variant;nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2	NFE2L2|p.Q556Tfs*15|1|0.32|ENSG00000116044|chr2:177230937-177230938|-/T|frameshift_variant	NFE2L2|p.Q556Tfs*15|1|0.32|ENSG00000116044|chr2:177230937-177230938|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	651.1959838867188	2	650.79586	1299.57717	-0.16547	-0.00010769	0.17663	0.00011495	0.011157	7.2611E-06	650.7959394623473	72.094	0.65833	72.094	71.815	72.474	0					36	12	4	0	0	0	0.031595	1	26204	26204		140.63	96.861	1	16601000			34528	3364	25253	25428	33601	33601					-0.06063800944434661
LTEVDNYHFY	10	Unmodified	_LTEVDNYHFY_					0	0	0		NFE2L2|p.Q556Tfs*15|1|0.32|ENSG00000116044|chr2:177230937-177230938|-/T|frameshift_variant;nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2	NFE2L2|p.Q556Tfs*15|1|0.32|ENSG00000116044|chr2:177230937-177230938|-/T|frameshift_variant	NFE2L2|p.Q556Tfs*15|1|0.32|ENSG00000116044|chr2:177230937-177230938|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	651.1953125	2	650.79586	1299.57717	-1.0398	-0.00067672	0.42846	0.00027884	-0.61137	-0.00039788	650.796082023737	71.556	0.70992	72.29	71.908	72.618	0.73421					32	13	4	0	0	0	0.014566	1	27089	27089		118.07	76.229	1	15796000			34529	3364	25253	25428	33602	33602					-0.06063800944434661
LTEVIEKAI	9	Unmodified	_LTEVIEKAI_					0	0	0		tr|U7SYX7|U7SYX7_FUSNUD-alanyl-D-alaninecarboxypeptidase(Penicillin-bindingprotein5/6)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00797PE=3SV=1	tr|U7SYX7|U7SYX7_FUSNUD-alanyl-D-alaninecarboxypeptidase(Penicillin-bindingprotein5/6)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00797PE=3SV=1	tr|U7SYX7|U7SYX7_FUSNUD-alanyl-D-alaninecarboxypeptidase(Penicillin-bindingprotein5/6)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00797PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	508.71099853515625	2	508.305332	1014.59611	-0.73974	-0.00037602	-0.74658	-0.00037949	-1.4863	-0.00075551	508.8081944323755	45.743	0.45255	46.508	46.15	46.603	0.76519					11	8	2	0	0	0	0.73363	1	17122	17122		3.5965	0.31518	1	851800			34530	29849	25254	25429	33603	33603					0.08939780417267684
LTEVNKTGTQY	11	Unmodified	_LTEVNKTGTQY_					0	0	0		ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	MULTI-MSMS	A375_MHC_IP_R1	1	627.721923828125	2	627.322242	1252.62993	-0.91582	-0.00057452	0.28836	0.00018089	-0.62746	-0.00039362	627.3224470530993	26.246	0.55815	26.246	26.068	26.626	0					38	10	5	0	0	0	4.0280000000000004E-27	2	7780	7780;7866		234.99	164.66	1	122500000			34531	3914	25255	25430	33604;33605	33604					0.01372157118407813
LTEVNKTGTQY	11	Unmodified	_LTEVNKTGTQY_					0	0	0		ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	MULTI-MSMS	A375_MHC_IP_R2	2	627.7219848632812	2	627.322242	1252.62993	-1.2759	-0.00080037	0.50394	0.00031613	-0.77191	-0.00048424	627.3225751685954	25.712	0.71273	26.372	26.144	26.857	0.65992					44	13	5	0	0	0	1.5792E-54	2	8603	8603;8647		275.67	196.08	1	129400000			34532	3914	25255	25430	33606;33607	33606					0.01372157118407813
LTEVSNPITV	10	Unmodified	_LTEVSNPITV_					0	0	0		OLFM2|p.G200E|1|0.39|ENSG00000105088|chr19:9856895-9856895|C/T|missense_variant	OLFM2|p.G200E|1|0.39|ENSG00000105088|chr19:9856895-9856895|C/T|missense_variant	OLFM2|p.G200E|1|0.39|ENSG00000105088|chr19:9856895-9856895|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1974487304688	2	536.797872	1071.58119	-0.99143	-0.0005322	-0.38919	-0.00020892	-1.3806	-0.00074111	536.7974105214747	55.16	0.91555	55.911	55.422	56.337	0.75075					24	10	3	0	0	0	0.51493	1	20873	20873		45.7	1.8413	1	9884700			34533	15050	25256	25431	33608	33608					0.0482628854927043
LTEVTRKVSLN	11	Unmodified	_LTEVTRKVSLN_					0	0	0			REV__nc|ENSG00000186001|Q96II8-2|LRCH3	REV__nc|ENSG00000186001|Q96II8-2|LRCH3	MSMS	A375_MHC_IP_R2	2	630.4686889648438	2	630.369527	1258.7245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.496	1	72.23	71.73	72.73	0.73421								0	0	0	0.16213	1	27123	27123		7.609	0	1		+		34534	27419	25257	25432	33609	33609					0.10548715660388552
LTEVTTFLEI	10	Unmodified	_LTEVTTFLEI_					0	0	0			REV__ENST00000469080.5_1_X:47092634-47106681:+|nuORF	REV__ENST00000469080.5_1_X:47092634-47106681:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	583.7200927734375	2	583.32118	1164.62781	-0.1667	-9.7242E-05	-1.8416	-0.0010742	-2.0083	-0.0011715	583.3197579599104	63.156	0.46247	63.156	62.914	63.377	0					18	8	3	0	0	0	0.85074	1	22846	22846		21.537	0	1	1573200	+		34535	17212	25258	25433	33610	33610					0.05207728380560184
LTEWLRFYNKW	11	Unmodified	_LTEWLRFYNKW_					0	0	0		nc|ENSG00000157800|Q8NCC5-3|SLC37A3;nc|ENSG00000157800|Q8NCC5-2|SLC37A3;ENSG00000157800|ENST00000326232|SLC37A3;ENST00000473707.5_1_7:140051761-140069464:-|nuORF;ENST00000464865.5_1_7:140051761-140082350:-|nuORF	nc|ENSG00000157800|Q8NCC5-3|SLC37A3	nc|ENSG00000157800|Q8NCC5-3|SLC37A3	MSMS	A375_MHC_IP_R1	1	778.2328491210938	2	778.406444	1554.79833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.62	1	127.62	127.12	128.12	0								0	0	0	0.16302	1	48944	48944		2.9952	0	1				34536	6267	25259	25434	33611	33611					0.043126838227181
LTEYPRETF	9	Unmodified	_LTEYPRETF_					0	0	0		ENST00000473682.5_1_1:111740397-111743081:-|nuORF;nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D	ENST00000473682.5_1_1:111740397-111743081:-|nuORF	ENST00000473682.5_1_1:111740397-111743081:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	577.73193359375	2	578.287671	1154.56079	-0.13894	-8.0345E-05	0.049138	2.8416E-05	-0.089798	-5.1929E-05	578.7877059097357	72.985	0.50758	72.985	72.676	73.184	0					13	9	2	0	0	0	0.73363	1	26592	26592		6.7232	0	1	1398700			34537	6595	25260	25435	33612	33612					-0.010308821105354582
LTFDRDGV	8	Unmodified	_LTFDRDGV_					0	0	0			REV__ENSG00000165238|ENST00000427277|WNK2	REV__ENSG00000165238|ENST00000427277|WNK2	MULTI-SECPEP	A375_MHC_IP_R2	2	462.13470458984375	2	461.735074	921.455596	-0.44791	-0.00020682	-0.21214	-9.795E-05	-0.66005	-0.00030477	461.7349672771427	103.81	0.5049	104.57	104.4	104.9	0.76428					14	9	2	0	0	0	0.97144	1	39305	39305		0.6015	0	1	2082600	+		34538	20564	25261	25436	33613	33613					-0.008273785162828062
LTFEQIRKL	9	Unmodified	_LTFEQIRKL_					0	0	0		ENSG00000006007|ENST00000353258|GDE1	ENSG00000006007|ENST00000353258|GDE1	ENSG00000006007|ENST00000353258|GDE1	MSMS	A375_MHC_IP_R1	1	383.27789306640625	3	383.232641	1146.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.909	1	61.909	61.409	62.409	0								0	0	0	0.14987	1	22340	22340		21.799	3.0782	1				34539	905	25262	25437	33614	33614					0.10862266811136578
LTFHACIFD	9	Unmodified	_LTFHACIFD_					0	0	0			REV__nc|ENSG00000157119|Q2TBA0-2|KLHL40	REV__nc|ENSG00000157119|Q2TBA0-2|KLHL40	MULTI-SECPEP	A375_MHC_IP_R1	1	534.1740112304688	2	533.754953	1065.49535	-0.83539	-0.00044589	-0.45957	-0.0002453	-1.295	-0.00069119	533.7545503272166	52.883	0.76142	52.883	52.287	53.048	0					25	14	3	0	0	0	0.76187	1	18637	18637		7.2892	5.8073	1	3156700	+		34540	20015	25263	25438	33615	33615					-0.0347757483721125
LTFLAPAP	8	Unmodified	_LTFLAPAP_					0	0	0			REV__ENST00000524558.5_1_11:75274622-75277455:+|nuORF	REV__ENST00000524558.5_1_11:75274622-75277455:+|nuORF	MSMS	A375_MHC_IP_R2	2	415.1432800292969	2	415.244547	828.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.13	1	103.89	103.39	104.39	0.76428								0	0	0	0.16876	1	39061	39061		14.582	5.2343	1		+		34541	25756	25264	25439	33616	33616					0.05344202845424206
LTFLFSFWLK	10	Unmodified	_LTFLFSFWLK_					0	0	0			REV__ENST00000237654.8_1_4:77968731-77968890:-|nuORF	REV__ENST00000237654.8_1_4:77968731-77968890:-|nuORF	MSMS	A375_MHC_IP_R1	1	651.3449096679688	2	651.368267	1300.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.29	1	125.29	124.79	125.79	0								0	0	0	0.15038	1	47585	47585		17.113	4.0704	1		+		34542	23088	25265	25440	33617	33617					0.08364911993339774
LTFLGKYREF	10	Unmodified	_LTFLGKYREF_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;nc|ENSG00000125450|Q9BW27-2|NUP85;ENST00000581104.5_1_17:73208151-73231006:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MULTI-MSMS	A375_MHC_IP_R1	1	425.6365661621094	3	425.236163	1272.68666	-0.10266	-4.3655E-05	0.34511	0.00014675	0.24245	0.0001031	425.2364200789955	73.274	0.76021	73.274	72.93	73.69	0					20	14	3	0	0	0	0.69858	1	26667	26667		12.929	2.0297	1	1351500			34543	3964	25266	25441	33618	33618					0.06122249465556706
LTFLGKYREF	10	Unmodified	_LTFLGKYREF_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;nc|ENSG00000125450|Q9BW27-2|NUP85;ENST00000581104.5_1_17:73208151-73231006:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MULTI-MSMS	A375_MHC_IP_R2	2	425.6360778808594	3	425.236163	1272.68666	-0.3325	-0.00014139	0.16942	7.2042E-05	-0.16308	-6.9349E-05	425.5703499429251	72.353	0.50694	73.088	72.821	73.328	0.7354					19	9	3	0	0	0	0.69858	1	27478	27478		12.929	3.1644	1	1544700			34544	3964	25266	25441	33619	33619					0.06122249465556706
LTFLLEESR	9	Unmodified	_LTFLLEESR_					0	0	0		ENSG00000198765|ENST00000369522|SYCP1	ENSG00000198765|ENST00000369522|SYCP1	ENSG00000198765|ENST00000369522|SYCP1	MULTI-MSMS	A375_MHC_IP_R2	2	370.2733154296875	3	369.873001	1106.59717	0.21947	8.1177E-05	-0.71683	-0.00026514	-0.49736	-0.00018396	369.8728813360589	40.448	0.50924	41.222	40.98	41.489	0.77451					15	9	2	0	0	0	0.69317	1	15007	15007		7.609	1.8771	1	2342800			34545	9321	25267	25442	33620	33620					0.04813994786195508
LTFNCWFY	8	Unmodified	_LTFNCWFY_					0	0	0			REV__nc|ENSG859|P60507|ERVFC1	REV__nc|ENSG859|P60507|ERVFC1	MSMS	A375_MHC_IP_R2	2	547.1890869140625	2	547.244221	1092.47389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.931	1	64.671	64.171	65.171	0.74022								0	0	0	0.16876	1	24243	24243		19.439	4.8573	1		+		34546	27577	25268	25443	33621	33621					-0.0686495986594764
LTFNIYLRNYW	11	Unmodified	_LTFNIYLRNYW_					0	0	0			REV__nc|ENSG00000146276|P24046-3|GABRR1	REV__nc|ENSG00000146276|P24046-3|GABRR1	MSMS	A375_MHC_IP_R1	1	751.9000244140625	2	751.893169	1501.77178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.66	1	126.66	126.16	127.16	0								0	0	0	0.16307	1	48403	48403		2.7352	0	1		+		34547	17703	25269	25444	33622	33622					0.04096994931364861
LTFNWPHGTQ	10	Unmodified	_LTFNWPHGTQ_					0	0	0			REV__nc|ENSG00000112511|O43189-2|PHF1	REV__nc|ENSG00000112511|O43189-2|PHF1	MULTI-MSMS	A375_MHC_IP_R1	1	601.6957397460938	2	600.793455	1199.57236	-0.377	-0.0002265	-0.87089	-0.00052322	-1.2479	-0.00074972	601.2955581841439	75.568	0.55251	75.568	75.262	75.815	0					25	10	3	0	0	0	0.59108	1	27525	27525		21.537	1.1224	1	5771500	+		34548	27177	25270	25445	33623	33623					-0.019446402965286325
LTFQLEVF	8	Unmodified	_LTFQLEVF_					0	0	0			REV__nc|ENSG00000183317|Q5JZY3-3|EPHA10	REV__nc|ENSG00000183317|Q5JZY3-3|EPHA10	MULTI-SECPEP	A375_MHC_IP_R2	2	499.4603271484375	2	498.773668	995.532783	-0.83309	-0.00041552	-0.57197	-0.00028528	-1.4051	-0.00070081	498.7716826053958	56.346	0.45893	57.097	56.796	57.255	0.75014					16	8	3	0	0	0	0.972	1	21192	21192		13.508	0	1	1524600	+		34549	21749	25271	25446	33624	33624					0.034838397000498844
LTFQQYQRSS	10	Unmodified	_LTFQQYQRSS_					0	0	0			REV__ENST00000560764.5_1_15:57511653-57526277:+|nuORF	REV__ENST00000560764.5_1_15:57511653-57526277:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	629.7138061523438	2	629.314751	1256.61495	-1.0269	-0.00064621	-0.35993	-0.00022651	-1.3868	-0.00087273	629.3144088210644	54.576	0.5568	55.327	54.916	55.473	0.75075					16	10	2	0	0	0	0.44858	1	20586	20586		31.268	2.7738	1	4755400	+		34550	26171	25272	25447	33625	33625					-0.003092899589546505
LTFQQYQRSS	10	Unmodified	_LTFQQYQRSS_					0	0	0			REV__ENST00000560764.5_1_15:57511653-57526277:+|nuORF	REV__ENST00000560764.5_1_15:57511653-57526277:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	629.7138061523438	2	629.314751	1256.61495	-0.91081	-0.00057318	0.092581	5.8262E-05	-0.81823	-0.00051492	629.314781450136	62.457	0.76025	63.2	62.874	63.634	0.74263					40	14	4	0	0	0	0.63336	1	23628	23628		18.373	0.22675	1	23119000	+		34551	26171	25272	25447	33626	33626					-0.003092899589546505
LTFRINYY	8	Unmodified	_LTFRINYY_					0	0	0		nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4	nc|ENSG00000125247|Q5T4D3-2|TMTC4	nc|ENSG00000125247|Q5T4D3-2|TMTC4	MULTI-SECPEP	A375_MHC_IP_R1	1	363.9581298828125	3	363.862437	1088.56548	0.21009	7.6445E-05	-1.9443	-0.00070744	-1.7342	-0.000631	364.1963918830165	25.179	0.86334	25.179	24.647	25.511	0					20	16	2	0	0	0	0.972	1	7340	7340		7.609	1.4032	1	3233200			34552	3946	25273	25448	33627	33627					0.024740468228856116
LTFRTNSFRA	10	Unmodified	_LTFRTNSFRA_					0	0	0			REV__nc|ENSG00000131044|Q3SXZ7-2|TTLL9	REV__nc|ENSG00000131044|Q3SXZ7-2|TTLL9	MULTI-SECPEP	A375_MHC_IP_R1	1	404.16595458984375	3	404.887645	1211.64111	-0.38771	-0.00015698	0.35885	0.00014529	-0.028853	-1.1682E-05	404.88771360115646	42.158	0.55507	42.158	41.932	42.487	0					15	10	2	0	0	0	0.93873	1	14589	14589		5.0475	5.0475	1	1680800	+		34553	27224	25274	25449	33628	33628					0.043750240031840804
LTFSDCDPTY	10	Unmodified	_LTFSDCDPTY_					0	0	0			REV__ME3|p.Y584C|1|0.28|ENSG00000151376|chr11:86441343-86441343|T/C|missense_variant	REV__ME3|p.Y584C|1|0.28|ENSG00000151376|chr11:86441343-86441343|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	581.6419067382812	2	581.242072	1160.46959	0.016056	9.3327E-06	0.25833	0.00015015	0.27439	0.00015949	581.2421639312739	111.87	0.86462	111.87	111.46	112.33	0					39	16	4	0	0	0	0.14594	1	40954	40954		54.774	29.374	1	10472000	+		34554	27002	25275	25450	33629	33629					-0.1042251387016222
LTFSDCDPTY	10	Unmodified	_LTFSDCDPTY_					0	0	0			REV__ME3|p.Y584C|1|0.28|ENSG00000151376|chr11:86441343-86441343|T/C|missense_variant	REV__ME3|p.Y584C|1|0.28|ENSG00000151376|chr11:86441343-86441343|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	581.6412963867188	2	581.242072	1160.46959	-0.15328	-8.9094E-05	0.29845	0.00017347	0.14517	8.438E-05	581.2422069154766	111.19	0.76964	111.93	111.6	112.37	0.73692					33	14	3	0	0	0	0.11068	1	41884	41884		61.357	25.313	1	11827000	+		34555	27002	25275	25450	33630	33630					-0.1042251387016222
LTFSDCDPTY	10	Unmodified	_LTFSDCDPTY_					0	0	0			REV__ME3|p.Y584C|1|0.28|ENSG00000151376|chr11:86441343-86441343|T/C|missense_variant	REV__ME3|p.Y584C|1|0.28|ENSG00000151376|chr11:86441343-86441343|T/C|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	581.242072	1160.46959	0.016056	9.3327E-06	0.25833	0.00015015	0.27439	0.00015949	581.2421639312739	111.87	0.86462	111.87	111.46	112.33	0	-0.028985	-1.656E-05	NaN	61.357	39	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10472000	+		34556	27002	25275	25450							-0.1042251387016222
LTFSDCDPTY	10	Unmodified	_LTFSDCDPTY_					0	0	0			REV__ME3|p.Y584C|1|0.28|ENSG00000151376|chr11:86441343-86441343|T/C|missense_variant	REV__ME3|p.Y584C|1|0.28|ENSG00000151376|chr11:86441343-86441343|T/C|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	581.242072	1160.46959	-0.15328	-8.9094E-05	0.29845	0.00017347	0.14517	8.438E-05	581.2422069154766	111.19	0.76964	111.93	111.6	112.37	0.73692	0.028985	3.008E-05	NaN	61.357	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11827000	+		34557	27002	25275	25450							-0.1042251387016222
LTFTSLFCLQ	10	Unmodified	_LTFTSLFCLQ_					0	0	0		PRMT1|p.P270L|1|0.33|ENSG00000126457|chr19:49686142-49686142|C/T|missense_variant	PRMT1|p.P270L|1|0.33|ENSG00000126457|chr19:49686142-49686142|C/T|missense_variant	PRMT1|p.P270L|1|0.33|ENSG00000126457|chr19:49686142-49686142|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	586.6988525390625	2	586.804642	1171.59473	-0.54661	-0.00032075	-3.735	-0.0021917	-4.2816	-0.0025124	587.3029011235743	108.34	0.45973	109.09	108.81	109.27	0.75436					11	8	2	0	0	0	0.69306	1	40936	40936		13.906	3.0821	1	596370			34558	15231	25276	25451	33631	33631					0.015798230568861982
LTFVDRLQKF	10	Unmodified	_LTFVDRLQKF_					0	0	0		ENSG00000138615|ENST00000261883|CILP	ENSG00000138615|ENST00000261883|CILP	ENSG00000138615|ENST00000261883|CILP	MSMS	A375_MHC_IP_R1	1	423.29266357421875	3	422.911679	1265.71321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.738	1	31.738	31.238	32.238	0								0	0	0	0.15451	1	10189	10189		6.1918	1.4759	1				34559	5007	25277	25452	33632	33632					0.09097938356876512
LTFWWAGRRRR	11	Unmodified	_LTFWWAGRRRR_					0	0	0		ENST00000371417.3_1_9:140513107-140513176:-|nuORF	ENST00000371417.3_1_9:140513107-140513176:-|nuORF	ENST00000371417.3_1_9:140513107-140513176:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	753.322021484375	2	752.923461	1503.83237	-0.93073	-0.00070076	-1.156	-0.00087035	-2.0867	-0.0015711	753.4239997397506	106.62	0.66151	107.38	106.99	107.65	0.75977					25	12	3	0	0	0	0.99676	1	40235	40235		2.9952	1.6657	1	2228100			34560	11175	25278	25453	33633	33633					0.10060569824941012
LTFYIQNL	8	Unmodified	_LTFYIQNL_					0	0	0			REV__ENST00000562396.1_1_16:10481007-10481265:+|nuORF	REV__ENST00000562396.1_1_16:10481007-10481265:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	506.6405029296875	2	506.279118	1010.54368	-0.34276	-0.00017353	-0.843	-0.00042679	-1.1858	-0.00060032	506.27870231206447	77.411	1.5232	77.411	77.133	78.657	0					68	29	3	0	0	0	0.77651	1	28320	28320		26.884	0	1	8792400	+		34561	26187	25279	25454	33634	33634					0.038832420743119656
LTFYTEQY	8	Unmodified	_LTFYTEQY_					0	0	0		nc|ENSG00000148219|O75129-2|ASTN2;nc|ENSG00000148219|O75129-3|ASTN2;ENSG00000148219|ENST00000313400|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1663818359375	2	532.75039	1063.48623	-0.38727	-0.00020632	-2.8954	-0.0015425	-3.2826	-0.0017488	532.7486358745192	70.175	0.2027	70.175	70.034	70.237	0					5	3	2	0	0	0	0.93416	1	25490	25490		9.3474	0	1	736720			34562	5725	25280	25455	33635	33635					-0.042976449218940616
LTGATFLKKF	10	Unmodified	_LTGATFLKKF_					0	0	0			REV__ENSG00000184828|ENST00000590800|ZBTB7C	REV__ENSG00000184828|ENST00000590800|ZBTB7C	MULTI-MSMS	A375_MHC_IP_R1	1	376.2936706542969	3	375.893737	1124.65938	0.29886	0.00011234	-0.14239	-5.3523E-05	0.15647	5.8817E-05	375.8936559121611	61.375	0.45997	61.375	61.126	61.585	0					22	8	3	0	0	0	0.58757	1	22125	22125		21.799	6.551	1	6629900	+		34563	21839	25281	25456	33636	33636					0.10203765925166408
LTGATFLKKF	10	Unmodified	_LTGATFLKKF_					0	0	0			REV__ENSG00000184828|ENST00000590800|ZBTB7C	REV__ENSG00000184828|ENST00000590800|ZBTB7C	MULTI-MSMS	A375_MHC_IP_R2	2	376.29364013671875	3	375.893737	1124.65938	-0.043477	-1.6343E-05	-0.26662	-0.00010022	-0.3101	-0.00011656	375.8935859983549	60.426	0.56063	61.171	60.903	61.464	0.74503					30	10	4	0	0	0	0.64017	1	22866	22866		17.863	2.6147	1	5609800	+		34564	21839	25281	25456	33637	33637					0.10203765925166408
LTGATFLKKF	10	Unmodified	_LTGATFLKKF_					0	0	0			REV__ENSG00000184828|ENST00000590800|ZBTB7C	REV__ENSG00000184828|ENST00000590800|ZBTB7C	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	375.893737	1124.65938	0.29886	0.00011234	-0.14239	-5.3523E-05	0.15647	5.8817E-05	375.8936559121611	61.375	0.45997	61.375	61.126	61.585	0	0.10235	4.5329E-05	NaN	21.799	22	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6629900	+		34565	21839	25281	25456							0.10203765925166408
LTGATFLKKF	10	Unmodified	_LTGATFLKKF_					0	0	0			REV__ENSG00000184828|ENST00000590800|ZBTB7C	REV__ENSG00000184828|ENST00000590800|ZBTB7C	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	375.893737	1124.65938	-0.043477	-1.6343E-05	-0.26662	-0.00010022	-0.3101	-0.00011656	375.8935859983549	60.426	0.56063	61.171	60.903	61.464	0.74503	-0.10235	-9.4768E-05	NaN	21.799	30	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5609800	+		34566	21839	25281	25456							0.10203765925166408
LTGDACMCLKY	11	Unmodified	_LTGDACMCLKY_					0	0	0			REV__nc|ENSG00000163069|Q16585-2|SGCB	REV__nc|ENSG00000163069|Q16585-2|SGCB	MULTI-SECPEP	A375_MHC_IP_R1	1	609.7222900390625	2	609.271795	1216.52904	-0.53368	-0.00032516	-2.4018	-0.0014633	-2.9354	-0.0017885	609.2702164663674	90.513	0.66102	90.513	90.184	90.845	0					17	12	2	0	0	0	0.99018	1	33157	33157		7.609	0	1	3055100	+		34567	20333	25282	25457	33638	33638					-0.07056657451994397
LTGDLHLFKPP	11	Unmodified	_LTGDLHLFKPP_					0	0	0			REV__ENST00000358387.8_1_5:134209678-134209915:+|nuORF	REV__ENST00000358387.8_1_5:134209678-134209915:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	618.7297973632812	2	619.350606	1236.68666	-0.38322	-0.00023734	1.146	0.00070977	0.76278	0.00047243	619.3522436078418	91.781	0.65814	91.781	91.452	92.11	0					23	12	3	0	0	0	0.94168	1	33618	33618		15.248	3.0078	1	3686700	+		34568	23856	25283	25458	33639	33639					0.07778249465582121
LTGGPGGGGQG	11	Unmodified	_LTGGPGGGGQG_					0	0	0		ENST00000566044.5_1_16:47495210-47497806:+|nuORF;ENST00000566037.6_1_16:47495183-47497811:+|nuORF	ENST00000566044.5_1_16:47495210-47497806:+|nuORF	ENST00000566044.5_1_16:47495210-47497806:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	429.6087951660156	2	429.209224	856.403895	-0.42308	-0.00018159	-0.60419	-0.00025932	-1.0273	-0.00044091	429.2090076027996	34.989	0.40423	35.752	35.576	35.98	0.76338					12	7	2	0	0	0	0.73016	1	12698	12698		8.7454	0.83525	1	2328000			34569	13556	25284	25459	33640	33640					-0.030051222101633357
LTGGPGGGGQG	11	Unmodified	_LTGGPGGGGQG_					0	0	0		ENST00000566044.5_1_16:47495210-47497806:+|nuORF;ENST00000566037.6_1_16:47495183-47497811:+|nuORF	ENST00000566044.5_1_16:47495210-47497806:+|nuORF	ENST00000566044.5_1_16:47495210-47497806:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	429.209224	856.403895	0.076372	3.2779E-05	-0.84948	-0.0003646	-0.77311	-0.00033182	429.2089235144721	35.684	0.46088	35.684	35.421	35.881	0	-0.034215	-0.0001135	NaN	8.7454	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1679500			34570	13556	25284	25459							-0.030051222101633357
LTGGSESNDF	10	Unmodified	_LTGGSESNDF_					0	0	0		ENSG00000113248|ENST00000231173|PCDHB15	ENSG00000113248|ENST00000231173|PCDHB15	ENSG00000113248|ENST00000231173|PCDHB15	MSMS	A375_MHC_IP_R1	1	513.6687622070312	2	513.722361	1025.43017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.916	1	70.916	70.416	71.416	0								0	0	0	0.15332	1	25757	25757		10.074	0.6908	1				34571	3133	25285	25460	33641	33641					-0.081528978293818
LTGHPHLKIL	10	Unmodified	_LTGHPHLKIL_					0	0	0		nc|ENSG00000081913|O60346-2|PHLPP1;ENSG00000081913|ENST00000262719|PHLPP1	nc|ENSG00000081913|O60346-2|PHLPP1	nc|ENSG00000081913|O60346-2|PHLPP1	MSMS	A375_MHC_IP_R1	1	376.9610290527344	3	376.901114	1127.68151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.012	1	33.012	32.512	33.512	0								0	0	0	0.15531	1	10725	10725		3.5871	0.85186	1				34572	1748	25286	25461	33642	33642					0.12277990393613436
LTGIVSQHI	9	Unmodified	_LTGIVSQHI_					0	0	0		AXDND1|p.P657S|1|0.26|ENSG00000162779|chr1:179468613-179468613|C/T|missense_variant	AXDND1|p.P657S|1|0.26|ENSG00000162779|chr1:179468613-179468613|C/T|missense_variant	AXDND1|p.P657S|1|0.26|ENSG00000162779|chr1:179468613-179468613|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	484.681640625	2	484.282192	966.549831	-0.46382	-0.00022462	0.50193	0.00024308	0.038113	1.8457E-05	484.28232669042967	47.781	0.30428	48.543	48.378	48.682	0.76128					8	5	2	0	0	0	0.69381	1	17972	17972		20.415	1.1575	1	1464500			34573	219	25287	25462	33643	33643					0.06521760305861335
LTGLIRYKKN	10	Unmodified	_LTGLIRYKKN_					0	0	0			REV__tr|U7SQ35|U7SQ35_FUSNUDUF374domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01674PE=4SV=1	REV__tr|U7SQ35|U7SQ35_FUSNUDUF374domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01674PE=4SV=1	MSMS	A375_MHC_IP_R1	1	603.74462890625	2	603.371872	1204.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.681	1	68.681	68.181	69.181	0								0	0	0	0.15353	1	24910	24910		9.3831	1.2276	1		+		34574	28374	25288	25463	33644	33644					0.13501644593793571
LTGMLGNLTV	10	Unmodified	_LTGMLGNLTV_					0	0	0		ENSG00000122375|ENST00000241891|OPN4;nc|ENSG00000122375|Q9UHM6-2|OPN4	ENSG00000122375|ENST00000241891|OPN4	ENSG00000122375|ENST00000241891|OPN4	MULTI-SECPEP	A375_MHC_IP_R2	2	510.1695251464844	2	509.78371	1017.55287	-0.6417	-0.00032713	1.6247	0.00082824	0.98298	0.00050111	509.7843050691268	46.441	0.66043	47.206	46.704	47.364	0.76519					14	12	2	0	0	0	0.85226	1	17231	17231		6.2058	0	1	1580400			34575	3775	25289	25464	33645	33645					0.04479267368355977
LTGNAMLPNAD	11	Unmodified	_LTGNAMLPNAD_					0	0	0			REV__nc|ENSG00000198561|O60716-8|CTNND1	REV__nc|ENSG00000198561|O60716-8|CTNND1	MULTI-MSMS	A375_MHC_IP_R2	2	559.170654296875	2	558.771331	1115.52811	-0.92545	-0.00051711	0.18204	0.00010172	-0.74341	-0.0004154	558.7715173649797	50.041	0.40737	50.795	50.599	51.006	0.75406					12	7	2	0	0	0	0.50535	1	18840	18840		30.703	3.4802	1	1629300	+		34576	22382	25290	25465	33646	33646					-0.025034125050297007
LTGPWKLW	8	Unmodified	_LTGPWKLW_					0	0	0		ENSG00000082293|ENST00000620364|COL19A1;ENST00000476656.1_1_6:70589459-70599853:+|nuORF	ENSG00000082293|ENST00000620364|COL19A1	ENSG00000082293|ENST00000620364|COL19A1	MULTI-MSMS	A375_MHC_IP_R2	2	501.1843566894531	2	500.78437	999.554188	-0.50826	-0.00025453	0.52891	0.00026487	0.020647	1.034E-05	500.7845347750176	109.17	0.71201	109.92	109.57	110.28	0.74683					34	13	4	0	0	0	0.16582	1	41163	41163		78.149	35.181	1	7085700			34577	1757	25291	25466	33647	33647					0.054392695194110274
LTGQEETRER	10	Unmodified	_LTGQEETRER_					0	0	0		ENST00000488819.1_1_1:160709091-160709345:+|nuORF	ENST00000488819.1_1_1:160709091-160709345:+|nuORF	ENST00000488819.1_1_1:160709091-160709345:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	609.2327880859375	2	609.807291	1217.60003	-0.50924	-0.00031054	1.2333	0.00075208	0.72406	0.00044154	609.8073775445779	75.18	0.25188	75.917	75.772	76.023	0.73752					6	4	2	0	0	0	0.91442	1	28499	28499		11.495	0	1	890970			34578	12624	25292	25467	33648	33648					-6.78182695992291E-05
LTGTLAPG	8	Unmodified	_LTGTLAPG_					0	0	0		ENSG00000253958|ENST00000519106|CLDN23	ENSG00000253958|ENST00000519106|CLDN23	ENSG00000253958|ENST00000519106|CLDN23	MSMS	A375_MHC_IP_R1	1	365.26605224609375	2	365.210704	728.406855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.821	1	35.821	35.321	36.321	0								0	0	0	0.16876	1	11943	11943		15.768	1.1865	1				34579	9872	25293	25468	33649	33649					0.03178752914618599
LTGVNIIG	8	Unmodified	_LTGVNIIG_					0	0	0		tr|U7T084|U7T084_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00768PE=4SV=1	tr|U7T084|U7T084_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00768PE=4SV=1	tr|U7T084|U7T084_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00768PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	393.62103271484375	2	393.739628	785.464704	0.18961	7.4658E-05	1.008	0.00039691	1.1977	0.00047156	393.73965436345685	54.347	0.40369	54.347	54.163	54.567	0					10	7	2	0	0	0	0.972	1	19476	19476		0.6015	0	1	561810			34580	29875	25294	25469	33650	33650					0.06339014840057189
LTGVNIIG	8	Unmodified	_LTGVNIIG_					0	0	0		tr|U7T084|U7T084_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00768PE=4SV=1	tr|U7T084|U7T084_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00768PE=4SV=1	tr|U7T084|U7T084_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00768PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	393.739628	785.464704	-0.77435	-0.00030489	0.40944	0.00016121	-0.36492	-0.00014368	393.73974660576437	53.297	0.30573	54.048	53.842	54.147	0.75105	-0.14954	-0.00010951	NaN	0.6015	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	552990			34581	29875	25294	25469							0.06339014840057189
LTGVPRRT	8	Unmodified	_LTGVPRRT_					0	0	0		nc|ENSG00000005379|O95153-2|TSPOAP1;ENSG00000005379|ENST00000343736|TSPOAP1;nc|ENSG00000005379|O95153-3|TSPOAP1	nc|ENSG00000005379|O95153-2|TSPOAP1	nc|ENSG00000005379|O95153-2|TSPOAP1	MULTI-MSMS	A375_MHC_IP_R1	1	450.6744384765625	2	450.274701	898.534849	-0.32865	-0.00014798	0.90334	0.00040675	0.57469	0.00025877	450.2749999640742	129.47	1.1669	129.47	129.25	130.41	0					60	22	4	0	0	0	0.77797	1	49990	49990		2.3027	1.5091	1	145450000			34582	891	25295	25470	33651	33651					0.08152313228526964
LTGVQKVSL	9	Unmodified	_LTGVQKVSL_					0	0	0			REV__PLEKHG2|p.E143K|1|0.31|ENSG00000090924|chr19:39415387-39415387|G/A|missense_variant	REV__PLEKHG2|p.E143K|1|0.31|ENSG00000090924|chr19:39415387-39415387|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	472.11328125	2	472.792392	943.570232	-0.80032	-0.00037839	0.5063	0.00023938	-0.29402	-0.00013901	472.7925433637791	49.974	0.35662	50.728	50.548	50.904	0.75406					11	6	2	0	0	0	0.67483	1	18751	18751		3.2813	0	1	1186700	+		34583	27803	25296	25471	33652	33652					0.0961893096566655
LTGVRARN	8	Unmodified	_LTGVRARN_					0	0	0			REV__SLC2A6|p.D26N|1|0.9|ENSG00000160326|chr9:133478984-133478984|C/T|missense_variant	REV__SLC2A6|p.D26N|1|0.9|ENSG00000160326|chr9:133478984-133478984|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	443.15667724609375	2	443.764501	885.514448	0.19005	8.4339E-05	0.19251	8.5429E-05	0.38256	0.00016977	443.7644804970161	108.58	0.70853	108.58	108.36	109.07	0					27	13	3	0	0	0	0.972	1	39857	39857		5.2307	5.2307	1	2518900	+		34584	27988	25297	25472	33653	33653					0.06711142568701689
LTHAKLLLN	9	Unmodified	_LTHAKLLLN_					0	0	0			REV__nc|ENSG00000172159|A2A2Y4-5|FRMD3	REV__nc|ENSG00000172159|A2A2Y4-5|FRMD3	MULTI-SECPEP	A375_MHC_IP_R2	2	512.22119140625	2	511.821484	1021.62842	-0.75179	-0.00038478	-0.16889	-8.6444E-05	-0.92069	-0.00047123	511.82133905793273	76.872	2.5413	77.615	76.49	79.031	0.74294					86	49	2	0	0	0	0.50702	1	29062	29062		19.257	1.1106	1	2223000	+		34585	21125	25298	25473	33654	33654					0.11846612610941065
LTHDAASTLLF	11	Unmodified	_LTHDAASTLLF_					0	0	0			REV__ENST00000422665.1_1_1:155170029-155174976:+|nuORF	REV__ENST00000422665.1_1_1:155170029-155174976:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	397.2802429199219	3	396.880156	1187.61864	-0.24898	-9.8815E-05	0.54275	0.00021541	0.29377	0.00011659	396.8803109943712	37.859	0.50992	37.859	37.658	38.168	0					22	9	3	0	0	0	0.82225	1	12808	12808		17.863	0	1	4650200	+		34586	24609	25299	25474	33655	33655					0.03233379814901127
LTHDALGLSTF	11	Unmodified	_LTHDALGLSTF_					0	0	0		ENSG00000215187|ENST00000399742|FAM166B	ENSG00000215187|ENST00000399742|FAM166B	ENSG00000215187|ENST00000399742|FAM166B	MULTI-SECPEP	A375_MHC_IP_R1	1	588.1687622070312	2	587.808771	1173.60299	-0.3583	-0.00021061	0.82042	0.00048225	0.46212	0.00027164	587.8089555261176	58.811	0.45658	58.811	58.43	58.887	0					10	8	2	0	0	0	0.99411	1	21010	21010		12.241	12.241	1	813470			34587	9640	25300	25475	33656	33656					0.02313093297834712
LTHDVYKPF	9	Unmodified	_LTHDVYKPF_					0	0	0		nc|ENSG00000142675|Q969H4|CNKSR1;ENSG00000142675|ENST00000361530|CNKSR1;ENST00000484874.2_1_1:26513821-26514866:+|nuORF	nc|ENSG00000142675|Q969H4|CNKSR1	nc|ENSG00000142675|Q969H4|CNKSR1	MULTI-SECPEP	A375_MHC_IP_R2	2	559.697265625	2	560.295299	1118.57605	-1.0963	-0.00061425	-2.3606	-0.0013227	-3.4569	-0.0019369	560.2920519459018	53.762	0.35943	54.513	54.249	54.609	0.75105					10	6	3	0	0	0	0.60917	1	20207	20207		19.257	5.3509	1	1485400			34588	5325	25301	25476	33657	33657					0.021500294773204587
LTHGRFLQSL	10	Unmodified	_LTHGRFLQSL_					0	0	0			REV__ENST00000597008.5_1_19:4100806-4102439:-|nuORF	REV__ENST00000597008.5_1_19:4100806-4102439:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	585.9423828125	2	586.332747	1170.65094	-0.42456	-0.00024893	-0.042325	-2.4817E-05	-0.46688	-0.00027375	586.3324042510587	84.089	0.45399	84.089	83.937	84.391	0					11	8	2	0	0	0	0.87163	1	30814	30814		13.906	4.5229	1	1303700	+		34589	26477	25302	25477	33658	33658					0.07244212008549766
LTHGVISSYN	10	Unmodified	_LTHGVISSYN_					0	0	0			REV__ENSG00000107611|ENST00000377833|CUBN	REV__ENSG00000107611|ENST00000377833|CUBN	MULTI-SECPEP	A375_MHC_IP_R1	1	1090.02880859375	1	1090.55275	1089.54547	0.36491	0.00039795	-3.7693	-0.0041107	-3.4044	-0.0037127	1091.551226444078	126.33	0.25353	126.33	126.15	126.41	0					8	4	3	0	0	0	0.60238	1	48205	48205		32.786	11.249	1	5242400	+		34590	17491	25303	25478	33659	33659					0.0042825109228488145
LTHILVLYLFY	11	Unmodified	_LTHILVLYLFY_					0	0	0			REV__LRRC8C|p.P128L|1|0.08|ENSG00000171488|chr1:89712953-89712953|C/T|missense_variant	REV__LRRC8C|p.P128L|1|0.08|ENSG00000171488|chr1:89712953-89712953|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	465.6085510253906	3	465.607596	1393.80096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.614	1	29.614	29.114	30.114	0								0	0	0	0.16309	1	9304	9304		2.6312	1.3016	1		+		34591	26956	25304	25479	33660	33660					0.11981139227623316
LTHLLRLLVL	10	Unmodified	_LTHLLRLLVL_					0	0	0		nc|ENSG00000214160|Q92685-2|ALG3;ENSG00000214160|ENST00000397676|ALG3;ENST00000485912.1_1_3:183960304-183960812:-|nuORF	nc|ENSG00000214160|Q92685-2|ALG3	nc|ENSG00000214160|Q92685-2|ALG3	MSMS	A375_MHC_IP_R1	1	596.0125732421875	2	595.902808	1189.79106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.215	1	78.215	77.715	78.715	0								0	0	0	0.15629	1	28551	28551		0.40072	0	1				34592	9607	25305	25480	33661	33661					0.2037599601292186
LTHLRAVGGP	10	Unmodified	_LTHLRAVGGP_					0	0	0			REV__ENST00000164024.4_1_3:48689051-48689879:-|nuORF	REV__ENST00000164024.4_1_3:48689051-48689879:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	510.7156066894531	2	510.801083	1019.58761	-0.81265	-0.0004151	0.14094	7.1991E-05	-0.67171	-0.00034311	510.80125281955003	38.307	0.40808	38.307	38.118	38.526	0					17	7	3	0	0	0	0.76414	1	12926	12926		26.884	26.884	1	3500100	+		34593	23011	25306	25481	33662	33662					0.07860271291326626
LTHPMTTGFM	10	Unmodified	_LTHPMTTGFM_					0	0	0			REV__nc|ENSG00000176225|Q86VV8-4|RTTN	REV__nc|ENSG00000176225|Q86VV8-4|RTTN	MULTI-SECPEP	A375_MHC_IP_R1	1	379.92816162109375	3	379.180672	1134.52019	0.42423	0.00016086	-1.2821	-0.00048613	-0.85784	-0.00032528	379.18024315426396	23.078	0.40279	23.078	22.773	23.176	0					10	7	2	0	0	0	0.92603	1	6153	6153		12.873	7.5757	1	1863200	+		34594	27373	25307	25482	33663	33663					-0.041692630261650265
LTHRKLSLIL	10	Unmodified	_LTHRKLSLIL_					0	0	0			REV__ENSG00000221937|ENST00000408947|TAS2R40	REV__ENSG00000221937|ENST00000408947|TAS2R40	MSMS	A375_MHC_IP_R2	2	597.562744140625	2	597.390065	1192.76558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.558	1	75.295	74.795	75.795	0.73752								0	0	0	0.15601	1	28300	28300		1.3295	0	1		+		34595	22696	25308	25483	33664	33664					0.1769052149052186
LTHSILVTYL	10	Unmodified	_LTHSILVTYL_					0	0	0			REV__ENSG00000172324|ENST00000302040|OR5A2	REV__ENSG00000172324|ENST00000302040|OR5A2	MSMS	A375_MHC_IP_R1	1	580.7859497070312	2	580.339707	1158.66486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.4	1	113.4	112.9	113.9	0								0	0	0	0.15332	1	41565	41565		10.074	0.6908	1		+		34596	21136	25309	25484	33665	33665					0.09187444717008475
LTHTPLAAL	9	Unmodified	_LTHTPLAAL_					0	0	0		LTR2752_dup21|chr2:81481148-81482372:-|1.6527395747859144|0.0780133736102343|4.4|397.0|31|3|sense	LTR2752_dup21|chr2:81481148-81482372:-|1.6527395747859144|0.0780133736102343|4.4|397.0|31|3|sense	LTR2752_dup21|chr2:81481148-81482372:-|1.6527395747859144|0.0780133736102343|4.4|397.0|31|3|sense	MULTI-SECPEP	A375_MHC_IP_R2	2	469.17901611328125	2	468.779285	935.544017	-0.5639	-0.00026434	-0.19972	-9.3625E-05	-0.76362	-0.00035797	468.7792239345129	78.517	0.40585	79.261	79.134	79.54	0.74474					10	7	2	0	0	0	0.52144	1	29852	29852		7.2892	0	1	1565900			34597	14330	25310	25485	33666	33666					0.07366661794185347
LTHTTWSF	8	Unmodified	_LTHTTWSF_					0	0	0			REV__ENST00000359653.4_1_10:126673604-126673718:+|nuORF	REV__ENST00000359653.4_1_10:126673604-126673718:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	496.7004089355469	2	496.745442	991.476331	0.007895	3.9218E-06	1.8008	0.00089456	1.8087	0.00089848	496.7453214788423	69.171	0.71208	69.171	68.969	69.681	0					18	13	3	0	0	0	0.68907	1	25082	25082		38.151	1.645	1	1130600	+		34598	23880	25311	25486	33667	33667					-0.019747881366242837
LTHYTTETPVS	11	Unmodified	_LTHYTTETPVS_					0	0	0			REV__ENST00000488519.1_1_9:130825709-130828462:-|nuORF	REV__ENST00000488519.1_1_9:130825709-130828462:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	417.62786865234375	3	416.875071	1247.60338	-0.19262	-8.03E-05	1.6245	0.00067722	1.4319	0.00059692	417.21058740041957	29.183	0.45797	29.183	28.945	29.403	0					14	8	3	0	0	0	0.9889	1	9022	9022		4.1166	2.5243	1	3110200	+		34599	25352	25312	25487	33668	33668					-0.010515317729641538
LTHYTTETPVS	11	Unmodified	_LTHYTTETPVS_					0	0	0			REV__ENST00000488519.1_1_9:130825709-130828462:-|nuORF	REV__ENST00000488519.1_1_9:130825709-130828462:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	416.875071	1247.60338	-0.53936	-0.00022484	-0.8762	-0.00036527	-1.4156	-0.00059011	416.87469428282884	28.488	0.20303	29.166	29.06	29.263	0.67857	-0.008235	-0.0015923	NaN	4.1166	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2714800	+		34600	25352	25312	25487							-0.010515317729641538
LTIDGNDIPPP	11	Unmodified	_LTIDGNDIPPP_					0	0	0			REV__CFHR2|p.S162L|1|0.19|ENSG00000080910|chr1:196957945-196957945|C/T|missense_variant	REV__CFHR2|p.S162L|1|0.19|ENSG00000080910|chr1:196957945-196957945|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	576.1896362304688	2	576.300778	1150.587	-0.34392	-0.0001982	0.66118	0.00038104	0.31727	0.00018284	576.3015500932418	53.107	0.65826	53.107	52.592	53.25	0					16	12	2	0	0	0	0.53535	1	18884	18884		47.594	3.7361	1	2720300	+		34601	15652	25313	25488	33669	33669					0.01773387060939058
LTIDGRYLSV	10	Unmodified	_LTIDGRYLSV_					0	0	0			REV__ENST00000494602.5_1_20:13976409-14547255:+|nuORF	REV__ENST00000494602.5_1_20:13976409-14547255:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	379.6051025390625	3	379.548518	1135.62372	0.012708	4.8232E-06	-0.69771	-0.00026482	-0.685	-0.00025999	379.54816575544737	40.028	0.35443	40.803	40.626	40.98	0.77451					11	6	2	0	0	0	0.67901	1	14805	14805		14.957	1.4222	1	2687000	+		34602	21132	25314	25489	33670	33670					0.06133683677512636
LTIDIRRS	8	Unmodified	_LTIDIRRS_					0	0	0			REV__ENSG00000108679|ENST00000262776|LGALS3BP	REV__ENSG00000108679|ENST00000262776|LGALS3BP	MSMS	A375_MHC_IP_R2	2	487.3587341308594	2	487.293091	972.571629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.75	1	134.89	134.39	135.39	0.13901								0	0	0	0.16876	1	53000	53000		32.117	7.4431	1		+		34603	17549	25315	25490	33671	33671					0.08424565054417599
LTIFGQKGA	9	Unmodified	_LTIFGQKGA_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	A375_MHC_IP_R1	1	468.17181396484375	2	467.77146	933.528367	-0.30595	-0.00014312	0.61569	0.000288	0.30974	0.00014489	467.7716704972465	59.27	0.35567	59.27	59.092	59.448	0					13	6	3	0	0	0	0.67483	1	21353	21353		6.2058	0	1	1523100	+		34604	17711	25316	25491	33672	33672					0.05894375277148356
LTIFKKRLK	9	Unmodified	_LTIFKKRLK_					0	0	0			REV__ENST00000487863.5_1_19:53056461-53056563:+|nuORF	REV__ENST00000487863.5_1_19:53056461-53056563:+|nuORF	MSMS	A375_MHC_IP_R1	1	573.8882446289062	2	573.889701	1145.76485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.011	1	89.011	88.511	89.511	0								0	0	0	0.15486	1	32693	32693		4.3292	0	1		+		34605	25341	25317	25492	33673	33673					0.19779726841443335
LTIHRRKRRRR	11	Unmodified	_LTIHRRKRRRR_					0	0	0		nc|ENSG00000062650|Q7Z5K2-2|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	MSMS	A375_MHC_IP_R1	1	774.5007934570312	2	774.500733	1546.98691	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.016	1	93.016	92.516	93.516	0								0	0	0	0.16354	1	34188	34188		0.30703	0.30703	1				34606	14469	25318	25493	33674	33674					0.2352981903015916
LTIKAVIFL	9	Unmodified	_LTIKAVIFL_					0	0	0		ENSG00000164855|ENST00000297477|TMEM184A;ENST00000468535.5_1_7:1586590-1589169:-|nuORF	ENSG00000164855|ENST00000297477|TMEM184A	ENSG00000164855|ENST00000297477|TMEM184A	MULTI-SECPEP	A375_MHC_IP_R2	2	509.1739501953125	2	509.338978	1016.6634	-0.71401	-0.00036367	-0.40061	-0.00020405	-1.1146	-0.00056772	509.33887800794145	126.61	0.15182	126.88	126.75	126.9	0.26593					4	2	2	0	0	0	0.71341	1	49563	49563		13.042	0	1	1670200			34607	6887	25319	25494	33675	33675					0.1557385541889289
LTIKSIGHQW	10	Unmodified	_LTIKSIGHQW_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	A375_MHC_IP_R1	1	395.2925720214844	3	394.892507	1181.65569	-0.012497	-4.9349E-06	0.50287	0.00019858	0.49038	0.00019365	394.8926410184397	53.459	0.55944	53.459	53.25	53.809	0					21	10	3	0	0	0	0.094079	1	19055	19055		64.927	48.361	1	5173200			34608	9304	25320	25495	33676	33676					0.07213096151326681
LTIKSIGHQW	10	Unmodified	_LTIKSIGHQW_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	A375_MHC_IP_R2	2	395.29248046875	3	394.892507	1181.65569	-0.60648	-0.00023949	0.41922	0.00016555	-0.18725	-7.3944E-05	394.8925858414173	52.571	0.55609	53.323	53.083	53.639	0.75225					22	10	3	0	0	0	0.13045	1	19816	19816		57.108	44.933	1	5496800			34609	9304	25320	25495	33677	33677					0.07213096151326681
LTILIKKII	9	Unmodified	_LTILIKKII_					0	0	0		ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	MSMS	A375_MHC_IP_R2	2	352.65850830078125	3	352.258127	1053.75255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.25	1	137.33	136.83	137.83	0.083969								0	0	0	0.15486	1	53875	53875		0	0	1				34610	2288	25321	25496	33678	33678					0.22782690378426196
LTILKTLRY	9	Unmodified	_LTILKTLRY_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-SECPEP	A375_MHC_IP_R2	2	560.07373046875	2	560.858067	1119.70158	-0.48888	-0.00027419	-0.42191	-0.00023663	-0.91079	-0.00051082	560.8578804389306	84.953	0.86677	85.689	85.322	86.188	0.73602					42	16	4	0	0	0	0.80005	1	32214	32214		4.756	0.81161	1	13154000			34611	4296	25322	25497	33679	33679					0.1465174133356868
LTIQEREFI	9	Unmodified	_LTIQEREFI_					0	0	0			REV__ENSG00000107854|ENST00000371627|TNKS2	REV__ENSG00000107854|ENST00000371627|TNKS2	MULTI-MSMS	A375_MHC_IP_R1	1	383.94866943359375	3	383.548518	1147.62372	0.43342	0.00016624	-0.31542	-0.00012098	0.118	4.5259E-05	383.54841412009284	54.389	0.50576	54.389	54.113	54.619	0					14	9	2	0	0	0	0.6324	1	19445	19445		12.873	0	1	3619400	+		34612	17500	25323	25498	33680	33680					0.055816836775193224
LTIQEREFI	9	Unmodified	_LTIQEREFI_					0	0	0			REV__ENSG00000107854|ENST00000371627|TNKS2	REV__ENSG00000107854|ENST00000371627|TNKS2	MULTI-SECPEP	A375_MHC_IP_R2	2	383.948486328125	3	383.548518	1147.62372	-0.6494	-0.00024908	1.0168	0.00038998	0.36738	0.00014091	383.54855223645484	53.472	0.5614	54.223	53.893	54.454	0.75105					19	10	3	0	0	0	0.59098	1	20214	20214		15.739	2.8827	1	4014200	+		34613	17500	25323	25498	33681	33681					0.055816836775193224
LTIQWTSSP	9	Unmodified	_LTIQWTSSP_					0	0	0			REV__ENST00000525063.2_2_11:10326682-10327306:+|nuORF	REV__ENST00000525063.2_2_11:10326682-10327306:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	517.1713256835938	2	516.771657	1031.52876	-0.73945	-0.00038213	-0.96708	-0.00049976	-1.7065	-0.00088188	517.272047107462	38.425	0.46088	38.425	38.218	38.679	0					14	8	2	0	0	0	0.10103	1	13060	13060		53.833	6.0841	1	3059000	+		34614	25763	25324	25499	33682	33682					0.014257502063401262
LTISWQKKKW	10	Unmodified	_LTISWQKKKW_					0	0	0			REV__ENST00000361060.5_1_2:69575455-69581668:-|nuORF	REV__ENST00000361060.5_1_2:69575455-69581668:-|nuORF	MSMS	A375_MHC_IP_R1	1	659.5081787109375	2	659.387522	1316.76049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.77	1	102.77	102.27	103.27	0								0	0	0	0.15435	1	37767	37767		6.7232	1.4263	1		+		34615	23901	25325	25500	33683	33683					0.11478217627904996
LTITADEAAP	10	Unmodified	_LTITADEAAP_					0	0	0		nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.M1658Sfs*11|1|0.32|ENSG00000171587|chr21:40055787-40055787|A/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM;DSCAM|p.E974K|2|0.39|ENSG00000171587|chr21:40178954-40178954|C/T|missense_variant	nc|ENSG00000171587|O60469-2|DSCAM	nc|ENSG00000171587|O60469-2|DSCAM	MULTI-MSMS	A375_MHC_IP_R1	1	502.68182373046875	2	501.261122	1000.50769	-0.75874	-0.00038033	0.64302	0.00032232	-0.11572	-5.8006E-05	501.2613121727181	68.173	0.76125	68.173	67.854	68.616	0					39	14	4	0	0	0	0.57505	1	24707	24707		22.736	0	1	9470000			34616	805	25326	25501	33684	33684					0.007457401068108993
LTIYIEWPS	9	Unmodified	_LTIYIEWPS_					0	0	0			REV__ENST00000463188.5_1_2:219529923-219536693:-|nuORF	REV__ENST00000463188.5_1_2:219529923-219536693:-|nuORF	MSMS	A375_MHC_IP_R2	2	374.4335021972656	3	374.534097	1120.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.329	1	38.1	37.6	38.6	0.7709								0	0	0	0.15486	1	13651	13651		2.2828	0	1		+		34617	20367	25327	25502	33685	33685					0.0249949390022266
LTIYYWFVDWW	11	Unmodified	_LTIYYWFVDWW_					0	0	0			REV__ENSG00000197147|ENST00000330947|LRRC8B	REV__ENSG00000197147|ENST00000330947|LRRC8B	MULTI-MSMS	A375_MHC_IP_R2	2	531.630859375	3	531.258856	1590.75474	-0.54025	-0.00028701	3.4499	0.0018328	2.9097	0.0015458	531.2598765681528	101.35	0.45699	102.11	101.85	102.31	0.76428					11	8	2	0	0	0	0.73658	2	38432	38432;38448		2.6312	1.3016	1	2144200	+		34618	22262	25328	25503	33686;33687	33686					-0.01700925674458631
LTKADTLIKE	10	Unmodified	_LTKADTLIKE_					0	0	0			REV__ENST00000474562.1_1_1:115321817-115323228:-|nuORF	REV__ENST00000474562.1_1_1:115321817-115323228:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	378.2926025390625	3	377.892173	1130.65469	0.078931	2.9828E-05	0.99218	0.00037494	1.0711	0.00040476	377.89249565606235	41.657	0.40834	42.432	42.198	42.607	0.77451					15	7	3	0	0	0	0.70682	1	15505	15505		9.2438	0.26753	1	2450300	+		34619	25160	25329	25504	33688	33688					0.0945883699175738
LTKADTLIKE	10	Unmodified	_LTKADTLIKE_					0	0	0			REV__ENST00000474562.1_1_1:115321817-115323228:-|nuORF	REV__ENST00000474562.1_1_1:115321817-115323228:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	377.892173	1130.65469	0.49778	0.00018811	0.91369	0.00034527	1.4115	0.00053338	377.89250792239415	42.572	0.40388	42.572	42.386	42.79	0	0.0703	-4.5052E-05	NaN	9.2438	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2701500	+		34620	25160	25329	25504							0.0945883699175738
LTKADTLIKE	10	Unmodified	_LTKADTLIKE_					0	0	0			REV__ENST00000474562.1_1_1:115321817-115323228:-|nuORF	REV__ENST00000474562.1_1_1:115321817-115323228:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	377.892173	1130.65469	0.078931	2.9828E-05	0.99218	0.00037494	1.0711	0.00040476	377.89249565606235	41.657	0.40834	42.432	42.198	42.607	0.77451	-0.0703	4.3931E-05	NaN	9.2438	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2450300	+		34621	25160	25329	25504							0.0945883699175738
LTKAIHTSP	9	Unmodified	_LTKAIHTSP_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	A375_MHC_IP_R1	1	484.6693420410156	2	484.282192	966.549831	0.14501	7.0225E-05	-0.4869	-0.0002358	-0.34189	-0.00016557	484.2817715526768	48.727	0.45652	48.727	48.476	48.933	0					12	8	2	0	0	0	0.53748	1	17110	17110		13.042	0	1	615740	+		34622	21639	25330	25505	33689	33689					0.06521760305838598
LTKDNPYEY	9	Unmodified	_LTKDNPYEY_					0	0	0		ENSG00000198105|ENST00000395867|ZNF248	ENSG00000198105|ENST00000395867|ZNF248	ENSG00000198105|ENST00000395867|ZNF248	MSMS	A375_MHC_IP_R1	1	571.6923217773438	2	571.771854	1141.52915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.775	1	57.775	57.275	58.275	0								0	0	0	0.14851	1	20737	20737		24.021	4.7636	1				34623	9229	25331	25506	33690	33690					-0.035948748644841544
LTKELQKRL	9	Unmodified	_LTKELQKRL_					0	0	0			REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	MULTI-SECPEP	A375_MHC_IP_R1	1	377.30780029296875	3	376.908157	1127.70264	-0.038577	-1.454E-05	-0.17842	-6.7247E-05	-0.21699	-8.1786E-05	376.90802478335877	29.632	1.8076	29.632	29.201	31.009	0					64	35	2	0	0	0	0.33896	1	9655	9655		40.239	1.6245	1	28686000	+		34624	20763	25332	25507	33691	33691					0.14389955702472434
LTKGRNLVVF	10	Unmodified	_LTKGRNLVVF_					0	0	0			REV__nc|ENSG00000196876|Q9UQD0-4|SCN8A	REV__nc|ENSG00000196876|Q9UQD0-4|SCN8A	MULTI-MSMS	A375_MHC_IP_R1	1	383.30474853515625	3	382.904636	1145.69208	0.55452	0.00021233	-0.27847	-0.00010663	0.27604	0.0001057	382.9045326979961	44.312	0.4618	44.312	44.113	44.575	0					14	8	2	0	0	0	0.69871	1	15469	15469		12.873	4.4283	1	2992600	+		34625	22235	25333	25508	33692	33692					0.1250597304801886
LTKGRNLVVF	10	Unmodified	_LTKGRNLVVF_					0	0	0			REV__nc|ENSG00000196876|Q9UQD0-4|SCN8A	REV__nc|ENSG00000196876|Q9UQD0-4|SCN8A	MULTI-MSMS	A375_MHC_IP_R1	1	383.3043212890625	3	382.904636	1145.69208	0.69784	0.00026721	-0.31545	-0.00012079	0.38239	0.00014642	382.90442714356203	48.405	0.60774	48.405	48.223	48.831	0					26	11	3	0	0	0	0.56082	1	17090	17090		23.801	2.9299	1	6785900	+		34626	22235	25333	25508	33693	33693					0.1250597304801886
LTKHNIKKI	9	Unmodified	_LTKHNIKKI_					0	0	0		nc|ENSG00000147481|Q9NSN8-2|SNTG1;ENSG00000147481|ENST00000642720|SNTG1	nc|ENSG00000147481|Q9NSN8-2|SNTG1	nc|ENSG00000147481|Q9NSN8-2|SNTG1	MSMS	A375_MHC_IP_R2	2	365.6002502441406	3	365.572998	1093.69716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.213	1	33.965	33.465	34.465	0.75225								0	0	0	0.15486	1	11879	11879		7.1017	0	1				34627	5687	25334	25509	33694	33694					0.15406276910653105
LTKIKKKLFKI	11	Unmodified	_LTKIKKKLFKI_					0	0	0			REV__tr|U7SLC0|U7SLC0_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01962PE=4SV=1	REV__tr|U7SLC0|U7SLC0_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01962PE=4SV=1	MSMS	A375_MHC_IP_R2	2	680.474365234375	2	680.476141	1358.93773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.35	1	117.01	116.51	117.51	0.65962								0	0	0	0.16354	1	43931	43931		0.30703	0.30703	1		+		34628	28269	25335	25510	33695	33695					0.27261673178009005
LTKKGIFAAQ	10	Unmodified	_LTKKGIFAAQ_					0	0	0			REV__KRBOX4|p.E113K|1|0.44|ENSG00000147121|chrX:46472833-46472833|G/A|missense_variant	REV__KRBOX4|p.E113K|1|0.44|ENSG00000147121|chrX:46472833-46472833|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	539.1715698242188	2	538.826766	1075.63898	-0.94308	-0.00050816	-0.98518	-0.00053084	-1.9283	-0.001039	538.8261979326426	55.701	0.30284	56.451	56.186	56.489	0.7503					6	5	2	0	0	0	0.87163	1	20997	20997		5.7319	0	1	936910	+		34629	26869	25336	25511	33696	33696					0.1041859526535518
LTKLKEMLN	9	Unmodified	_LTKLKEMLN_					0	0	0			REV__DZIP1|p.E554K|1|0.37|ENSG00000134874|chr13:95593964-95593964|C/T|missense_variant	REV__DZIP1|p.E554K|1|0.37|ENSG00000134874|chr13:95593964-95593964|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	364.6105651855469	3	363.882732	1088.62637	-0.49554	-0.00018032	-1.7352	-0.00063142	-2.2308	-0.00081174	363.88130026474266	36.69	0.20427	37.461	37.308	37.513	0.7709					5	3	2	0	0	0	0.75842	1	13359	13359		8.9762	0	1	350350	+		34630	16051	25337	25512	33697	33697					0.08559815810826876
LTKMKKTK	8	Unmodified	_LTKMKKTK_					0	0	0			REV__ENST00000225728.7_1_17:6547672-6547756:-|nuORF	REV__ENST00000225728.7_1_17:6547672-6547756:-|nuORF	MSMS	A375_MHC_IP_R2	2	489.71343994140625	2	489.312438	976.610322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.68	1	130.9	130.4	131.4	0.2142								0	0	0	0.16876	1	51395	51395		2.0598	0	1		+		34631	23059	25338	25513	33698	33698					0.12108154364591428
LTKMLRNA	8	Unmodified	_LTKMLRNA_					0	0	0			REV__ENST00000440623.5_1_2:182756982-182781157:+|nuORF	REV__ENST00000440623.5_1_2:182756982-182781157:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	473.66119384765625	2	473.778762	945.542971	-0.54356	-0.00025753	-1.9308	-0.00091479	-2.4744	-0.0011723	473.7773000423441	58.728	0.55846	58.728	58.278	58.836	0					15	10	2	0	0	0	0.94479	1	20965	20965		8.5933	0	1	971780	+		34632	19095	25339	25514	33699	33699					0.06802124153625755
LTKPTIVTSYS	11	Unmodified	_LTKPTIVTSYS_					0	0	0			REV__ENSG00000181693|ENST00000641600|OR8H1	REV__ENSG00000181693|ENST00000641600|OR8H1	MULTI-MSMS	A375_MHC_IP_R1	1	605.7395629882812	2	605.339904	1208.66525	-0.037653	-2.2793E-05	-0.5334	-0.00032289	-0.57105	-0.00034568	605.339517397808	21.852	0.45742	21.852	21.555	22.013	0					22	8	4	0	0	0	0.38403	1	5781	5781		40.239	8.9709	1	7023500	+		34633	21661	25340	25515	33700	33700					0.06926819646196236
LTKPTIVTSYS	11	Unmodified	_LTKPTIVTSYS_					0	0	0			REV__ENSG00000181693|ENST00000641600|OR8H1	REV__ENSG00000181693|ENST00000641600|OR8H1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	605.339904	1208.66525	-0.037653	-2.2793E-05	-0.5334	-0.00032289	-0.57105	-0.00034568	605.339517397808	21.852	0.45742	21.852	21.555	22.013	0	0	0	NaN	40.239	22	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7023500	+		34634	21661	25340	25515							0.06926819646196236
LTKQEFQTL	9	Unmodified	_LTKQEFQTL_					0	0	0		ENSG00000163527|ENST00000295770|STT3B;ENST00000436236.1_1_3:31638325-31661336:+|nuORF;ENST00000423527.5_1_3:31574490-31661461:+|nuORF;STT3B|p.F353I|1|0.48|ENSG00000163527|chr3:31617009-31617009|T/A|missense_variant;ENST00000453168.5_1_3:31574490-31661308:+|nuORF	ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	MULTI-SECPEP	A375_MHC_IP_R1	1	554.7050170898438	2	554.305864	1106.59717	-0.52198	-0.00028933	0.087005	4.8228E-05	-0.43497	-0.00024111	554.3056564516611	47.442	0.45543	47.442	47.263	47.718	0					14	8	2	0	0	0	0.43207	1	16728	16728		33.445	3.6043	1	2986200			34635	6678	25341	25516	33701	33701					0.04813994786195508
LTKQEFQTL	9	Unmodified	_LTKQEFQTL_					0	0	0		ENSG00000163527|ENST00000295770|STT3B;ENST00000436236.1_1_3:31638325-31661336:+|nuORF;ENST00000423527.5_1_3:31574490-31661461:+|nuORF;STT3B|p.F353I|1|0.48|ENSG00000163527|chr3:31617009-31617009|T/A|missense_variant;ENST00000453168.5_1_3:31574490-31661308:+|nuORF	ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	MULTI-MATCH	A375_MHC_IP_R2	2		2	554.305864	1106.59717	-0.62468	-0.00034627	0.040617	2.2514E-05	-0.58407	-0.00032375	554.3058162370274	46.598	0.40805	47.364	47.159	47.567	0.76519	-0.038962	-1.3527E-05	NaN	33.445	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1769700			34636	6678	25341	25516							0.04813994786195508
LTKQYRELLKK	11	Unmodified	_LTKQYRELLKK_					0	0	0		tr|U7T3E4|U7T3E4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00241PE=4SV=1	tr|U7T3E4|U7T3E4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00241PE=4SV=1	tr|U7T3E4|U7T3E4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00241PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	474.3605651855469	3	473.960921	1418.86093	-0.47034	-0.00022292	0.10423	4.9402E-05	-0.36611	-0.00017352	473.9608679403667	50.714	0.45585	50.714	50.459	50.915	0					19	8	3	0	0	0	0.99856	1	17978	17978		5.5233	4.1936	1	3753200			34637	29971	25342	25517	33702	33702					0.16825829890854038
LTKRRLLHEKL	11	Unmodified	_LTKRRLLHEKL_					0	0	0			REV__nc|ENSG00000136108|Q8WWK9-4|CKAP2	REV__nc|ENSG00000136108|Q8WWK9-4|CKAP2	MSMS	A375_MHC_IP_R1	1	469.6355895996094	3	469.636661	1405.88815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.988	1	19.988	19.488	20.488	0								0	0	0	0.16351	1	5063	5063		0.45452	0.29519	1		+		34638	15792	25343	25518	33703	33703					0.20144358221955372
LTKSTFLNI	9	Unmodified	_LTKSTFLNI_					0	0	0			REV__ENST00000246868.6_1_7:66453265-66453361:-|nuORF	REV__ENST00000246868.6_1_7:66453265-66453361:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1583862304688	2	518.8055	1035.59645	-0.45839	-0.00023782	-0.03765	-1.9533E-05	-0.49604	-0.00025735	518.8054033114746	70.593	0.30712	70.593	70.341	70.648	0					8	5	2	0	0	0	0.60917	1	25592	25592		9.3831	3.1773	1	888260	+		34639	23114	25344	25519	33704	33704					0.08007200137126347
LTKTALTSLE	10	Unmodified	_LTKTALTSLE_					0	0	0			REV__ENST00000561671.5_1_16:30017707-30020344:-|nuORF	REV__ENST00000561671.5_1_16:30017707-30020344:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	538.7160034179688	2	538.813522	1075.61249	-1.0571	-0.00056957	-0.86251	-0.00046473	-1.9196	-0.0010343	538.8163332121939	34.657	0.66025	35.42	35.017	35.677	0.76338					40	12	5	0	0	0	0.8528	1	12516	12516		21.537	17.208	1	15987000	+		34640	19703	25345	25520	33705	33705					0.0777086158336715
LTKYPLLL	8	Unmodified	_LTKYPLLL_					0	0	0		nc|ENSG00000171680|O94827-4|PLEKHG5;ENSG00000171680|ENST00000377728|PLEKHG5;nc|ENSG00000171680|O94827-3|PLEKHG5;nc|ENSG00000171680|O94827-7|PLEKHG5;ENST00000529970.5_1_11:120278459-120348246:+|nuORF;nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12;ENSG00000132694|ENST00000368194|ARHGEF11;nc|ENSG00000132694|O15085|ARHGEF11;ENST00000461678.1_1_1:156915777-156917159:-|nuORF;ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000595897.5_1_19:42402462-42407822:+|nuORF	nc|ENSG00000171680|O94827-4|PLEKHG5;ENSG00000132694|ENST00000368194|ARHGEF11;ENST00000600274.5_1_19:42396347-42410935:+|nuORF	nc|ENSG00000171680|O94827-4|PLEKHG5	MULTI-SECPEP	A375_MHC_IP_R1	1	481.2097473144531	2	480.810054	959.605554	-0.29948	-0.00014399	-0.37681	-0.00018117	-0.67629	-0.00032517	480.80978593940483	88.434	0.60985	88.434	88.154	88.764	0					17	11	2	0	0	0	0.68299	1	32492	32492		51.63	0	1	2018200			34641	7627;4442;1641	25346	25521	33706	33706					0.12413593493465669
LTLAAPVPHI	10	Unmodified	_LTLAAPVPHI_					0	0	0			REV__nc|ENSG00000116525|Q9BVG3-2|TRIM62	REV__nc|ENSG00000116525|Q9BVG3-2|TRIM62	MULTI-MSMS	A375_MHC_IP_R1	1	516.7161254882812	2	516.316035	1030.61752	-0.50991	-0.00026327	0.83876	0.00043307	0.32886	0.00016979	516.316645035214	96.35	0.56123	96.35	96.018	96.58	0					16	10	2	0	0	0	0.23156	1	35441	35441		46.021	23.285	1	1205300	+		34642	17957	25347	25522	33707	33707					0.10343210236646883
LTLAGYIASF	10	Unmodified	_LTLAGYIASF_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	A375_MHC_IP_R1	1	527.6731567382812	2	528.292225	1054.5699	-0.71864	-0.00037965	0.62675	0.00033111	-0.091894	-4.8547E-05	528.2923929036041	66.38	0.51016	66.38	66.122	66.632	0					10	9	2	0	0	0	0.8125	1	24067	24067		18.146	0	1	607580	+		34643	16747	25348	25523	33708	33708					0.04479511245813228
LTLAGYIASF	10	Unmodified	_LTLAGYIASF_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6731567382812	2	528.292225	1054.5699	-0.69519	-0.00036726	0.5967	0.00031523	-0.098483	-5.2028E-05	528.2920622471822	65.681	0.35361	66.419	66.172	66.526	0.73812					10	6	2	0	0	0	0.8125	1	24844	24844		13.042	0	1	531960	+		34644	16747	25348	25523	33709	33709					0.04479511245813228
LTLAIKKLLNY	11	Unmodified	_LTLAIKKLLNY_					0	0	0			REV__tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1	REV__tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	645.1873168945312	2	645.413206	1288.81186	-0.70591	-0.00045561	0.048775	3.148E-05	-0.65714	-0.00042413	645.4135181814783	68.361	0.30513	68.361	68.209	68.514	0					6	5	2	0	0	0	0.99606	1	24734	24734		6.2058	0	1	986770	+		34645	28208	25349	25524	33710	33710					0.17900541601966324
LTLANRQLY	9	Unmodified	_LTLANRQLY_					0	0	0			REV__ENSG00000147050|ENST00000611820|KDM6A	REV__ENSG00000147050|ENST00000611820|KDM6A	MULTI-SECPEP	A375_MHC_IP_R2	2	546.6714477539062	2	546.314023	1090.61349	-1.0724	-0.00058584	-1.3118	-0.00071664	-2.3841	-0.0013025	546.3139617248133	51.868	1.1684	52.62	51.864	53.032	0.75225					29	22	3	0	0	0	0.69504	1	19637	19637		18.135	0	1	4043400	+		34646	19563	25350	25525	33711	33711					0.07181120742961866
LTLCHVPSDSI	11	Unmodified	_LTLCHVPSDSI_					0	0	0			REV__nc|ENSG00000172349|Q14005-2|IL16	REV__nc|ENSG00000172349|Q14005-2|IL16	MULTI-SECPEP	A375_MHC_IP_R1	1	593.214111328125	2	592.802631	1183.59071	-0.38862	-0.00023038	-3.5228	-0.0020883	-3.9114	-0.0023187	592.8013597947577	68.652	0.35554	68.652	68.463	68.819	0					9	6	2	0	0	0	0.92455	1	24852	24852		2.2828	0	1	1195300	+		34647	21137	25351	25526	33712	33712					0.00625733563151698
LTLCLELRSEL	11	Unmodified	_LTLCLELRSEL_					0	0	0		ENSG00000101446|ENST00000217428|SPINT3	ENSG00000101446|ENST00000217428|SPINT3	ENSG00000101446|ENST00000217428|SPINT3	MSMS	A375_MHC_IP_R1	1	430.6658935546875	3	430.575968	1288.70607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.606	1	30.606	30.106	31.106	0								0	0	0	0.16179	1	9743	9743		7.4771	3.0709	1				34648	2298	25352	25527	33713	33713					0.07326837694176902
LTLDKIKITGD	11	Unmodified	_LTLDKIKITGD_					0	0	0			REV__ENSG00000135040|ENST00000361671|NAA35	REV__ENSG00000135040|ENST00000361671|NAA35	MULTI-SECPEP	A375_MHC_IP_R1	1	609.2609252929688	2	608.861003	1215.70745	-0.20595	-0.0001254	-0.15745	-9.5864E-05	-0.3634	-0.00022126	608.8610995703879	62.553	0.35949	62.553	62.351	62.711	0					9	6	2	0	0	0	0.95449	1	22624	22624		15.739	0	1	1593800	+		34649	18818	25353	25528	33714	33714					0.1082279505455972
LTLDQLQLT	9	Unmodified	_LTLDQLQLT_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	A375_MHC_IP_R1	1	523.2002563476562	2	522.800414	1043.58628	-0.57104	-0.00029854	-0.20033	-0.00010473	-0.77137	-0.00040327	522.8003304895263	68.617	0.70983	68.617	68.26	68.969	0					17	13	2	0	0	0	0.59098	1	24927	24927		27.629	0	1	1987700	+		34650	18059	25354	25529	33715	33715					0.06622592411895312
LTLDVHRWL	9	Unmodified	_LTLDVHRWL_					0	0	0			REV__ENSG00000127452|ENST00000247977|FBXL12	REV__ENSG00000127452|ENST00000247977|FBXL12	MULTI-SECPEP	A375_MHC_IP_R1	1	577.2298583984375	2	576.82984	1151.64513	-0.33499	-0.00019323	0.11573	6.6756E-05	-0.21926	-0.00012648	576.8299403207495	68.472	0.40688	68.472	68.31	68.717	0					12	7	2	0	0	0	0.775	1	24864	24864		3.5965	0	1	2522500	+		34651	18420	25355	25530	33716	33716					0.07537113496914571
LTLEGIRQF	9	Unmodified	_LTLEGIRQF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-SECPEP	A375_MHC_IP_R1	1	539.2083740234375	2	538.808574	1075.60259	-0.48912	-0.00026354	0.19649	0.00010587	-0.29263	-0.00015767	538.8086577403084	82.357	0.81214	82.357	82.011	82.823	0					40	15	4	0	0	0	0.010978	1	30074	30074		129.77	40.818	1	21096000			34652	6498;13685	25356	25531	33717	33717					0.06781718368665679
LTLEGIRQF	9	Unmodified	_LTLEGIRQF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-SECPEP	A375_MHC_IP_R2	2	539.2080078125	2	538.808574	1075.60259	-0.93729	-0.00050502	0.2447	0.00013185	-0.69259	-0.00037317	538.8086854281083	81.561	0.75618	82.304	81.928	82.684	0.74293					35	14	3	0	0	0	0.011357	1	30925	30925		83.429	14.324	1	18236000			34653	6498;13685	25356	25531	33718	33718					0.06781718368665679
LTLEVSRGV	9	Unmodified	_LTLEVSRGV_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MSMS	A375_MHC_IP_R2	2	487.1842346191406	2	487.287474	972.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.07	1	135.21	134.71	135.71	0.13901								0	0	0	0.11948	1	53118	53118		36.044	3.9272	1				34654	3923	25357	25532	33719	33719					0.07301742960294177
LTLFPRRIF	9	Unmodified	_LTLFPRRIF_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	A375_MHC_IP_R1	1	388.641357421875	3	388.241359	1161.70225	0.060657	2.3549E-05	0.28038	0.00010885	0.34103	0.0001324	388.2414469652719	90.098	1.7223	90.098	89.73	91.452	0					80	33	4	0	0	0	0.59266	1	33266	33266		15.248	0.8431	1	13053000			34655	7927	25358	25533	33720	33720					0.12786580773263267
LTLFTHRGFLL	11	Unmodified	_LTLFTHRGFLL_					0	0	0		nc|ENSG00000155380|P53985-2|SLC16A1;ENSG00000155380|ENST00000369626|SLC16A1	nc|ENSG00000155380|P53985-2|SLC16A1	nc|ENSG00000155380|P53985-2|SLC16A1	MSMS	A375_MHC_IP_R2	2	659.5081787109375	2	659.387522	1316.76049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.22	1	100.98	100.48	101.48	0.76278								0	0	0	0.15377	1	38005	38005		18.146	5.9057	1				34656	6141	25359	25534	33721	33721					0.11478217627904996
LTLGFAAAL	9	Unmodified	_LTLGFAAAL_					0	0	0			REV__ENSG00000143816|ENST00000272164|WNT9A	REV__ENSG00000143816|ENST00000272164|WNT9A	MSMS	A375_MHC_IP_R2	2	438.6602783203125	2	438.763104	875.511654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.43	1	141.47	140.97	141.97	0.04216								0	0	0	0.15486	1	55319	55319		7.9102	0	1		+		34657	19388	25360	25535	33722	33722					0.06891874391169495
LTLGIDRLV	9	Unmodified	_LTLGIDRLV_					0	0	0			REV__ENST00000531489.1_1_11:34356761-34356935:-|nuORF	REV__ENST00000531489.1_1_11:34356761-34356935:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	500.71343994140625	2	500.313492	998.612431	-0.51051	-0.00025541	0.13373	6.6905E-05	-0.37678	-0.00018851	500.31358852969663	95.131	0.66252	95.131	94.701	95.364	0					26	12	3	0	0	0	0.38578	1	34953	34953		34.402	0	1	2121300	+		34658	25851	25361	25536	33723	33723					0.11306906374045411
LTLGRQNW	8	Unmodified	_LTLGRQNW_					0	0	0		ENST00000493688.5_1_20:56813265-56820980:-|nuORF;ENST00000497138.5_1_20:56807969-56820980:-|nuORF;ENST00000577667.1_1_18:9557167-9559563:-|nuORF;ENST00000606437.2_1_20:56814667-56814961:-|nuORF;ENST00000285124.12_1_18:9547789-9562973:-|nuORF;nc|ENSG00000154845|Q8TF05-2|PPP4R1;ENSG00000154845|ENST00000400556|PPP4R1	ENST00000493688.5_1_20:56813265-56820980:-|nuORF;ENST00000285124.12_1_18:9547789-9562973:-|nuORF	ENST00000285124.12_1_18:9547789-9562973:-|nuORF	MSMS	A375_MHC_IP_R2	2	494.2155456542969	2	494.272158	986.529764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.35	1	90.082	89.582	90.582	0.7318								0	0	0	0.16876	1	34003	34003		18.135	2.2878	1				34659	6113;12683	25362	25537	33724	33724					0.035960093658900405
LTLHGNDIF	9	Unmodified	_LTLHGNDIF_					0	0	0		SLIT3|p.S836F|1|0.48|ENSG00000184347|chr5:168712331-168712331|G/A|missense_variant	SLIT3|p.S836F|1|0.48|ENSG00000184347|chr5:168712331-168712331|G/A|missense_variant	SLIT3|p.S836F|1|0.48|ENSG00000184347|chr5:168712331-168712331|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	515.2027587890625	2	515.271824	1028.5291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.197	1	85.933	85.433	86.433	0.73601								0	0	0	0.1499	1	32388	32388		21.747	0	1				34660	29207	25363	25538	33725	33725					0.015971699261854155
LTLIKKKKK	9	Unmodified	_LTLIKKKKK_					0	0	0		ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	MSMS	A375_MHC_IP_R1	1	367.2818908691406	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.455	1	51.455	50.955	51.955	0								0	0	0	0.15486	1	18265	18265		0.96228	0	1				34661	12352	25364	25539	33726	33726					0.23980897501246545
LTLISEGAQL	10	Unmodified	_LTLISEGAQL_					0	0	0		nc|ENSG858|P60608|ERVFC1-1	nc|ENSG858|P60608|ERVFC1-1	nc|ENSG858|P60608|ERVFC1-1	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1995849609375	2	522.800414	1043.58628	-0.50979	-0.00026652	-0.33547	-0.00017538	-0.84525	-0.0004419	522.8001873109463	67.718	0.71338	68.454	68.205	68.919	0.73631					20	13	2	0	0	0	0.90513	1	25743	25743		12.241	1.4167	1	1925500			34662	14973	25365	25540	33727	33727					0.06622592411895312
LTLKELQNRL	10	Unmodified	_LTLKELQNRL_					0	0	0		nc|ENSG00000101191|Q9BTC0-1|DIDO1;ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-2|DIDO1;nc|ENSG00000101191|Q9BTC0-3|DIDO1	nc|ENSG00000101191|Q9BTC0-1|DIDO1	nc|ENSG00000101191|Q9BTC0-1|DIDO1	MULTI-SECPEP	A375_MHC_IP_R1	1	410.61224365234375	3	409.918834	1226.73467	-0.24601	-0.00010085	1.1225	0.00046014	0.8765	0.00035929	409.9193094692407	39.637	0.40381	39.637	39.441	39.845	0					12	7	2	0	0	0	0.92772	1	13636	13636		2.4348	0.8425	1	1570200			34663	2268	25366	25541	33728	33728					0.13037323385606214
LTLKELQNRL	10	Unmodified	_LTLKELQNRL_					0	0	0		nc|ENSG00000101191|Q9BTC0-1|DIDO1;ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-2|DIDO1;nc|ENSG00000101191|Q9BTC0-3|DIDO1	nc|ENSG00000101191|Q9BTC0-1|DIDO1	nc|ENSG00000101191|Q9BTC0-1|DIDO1	MULTI-MATCH	A375_MHC_IP_R2	2		3	409.918834	1226.73467	-0.3609	-0.00014794	0.88266	0.00036182	0.52176	0.00021388	409.91920281603126	38.503	0.50899	39.277	39.047	39.556	0.77451	-0.18018	-0.00013019	NaN	2.4348	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1266200			34664	2268	25366	25541							0.13037323385606214
LTLKPMIFA	9	Unmodified	_LTLKPMIFA_					0	0	0		tr|U7SKZ1|U7SKZ1_FUSNURibosome-bindingATPaseYchFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ychFPE=3SV=1	tr|U7SKZ1|U7SKZ1_FUSNURibosome-bindingATPaseYchFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ychFPE=3SV=1	tr|U7SKZ1|U7SKZ1_FUSNURibosome-bindingATPaseYchFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ychFPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	517.711181640625	2	517.309364	1032.60417	-0.48656	-0.0002517	2.7232	0.0014087	2.2366	0.001157	517.3111542244478	40.723	0.55441	40.723	40.509	41.063	0					16	10	2	0	0	0	0.53748	1	14038	14038		18.146	0	1	2645900			34665	29487	25367	25542	33729	33729					0.08917636133060114
LTLKPVKF	8	Unmodified	_LTLKPVKF_					0	0	0		nc|ENSG00000149100|Q7L2H7-2|EIF3M;ENSG00000149100|ENST00000531120|EIF3M	nc|ENSG00000149100|Q7L2H7-2|EIF3M;ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	MULTI-SECPEP	A375_MHC_IP_R1	1	473.7099914550781	2	473.310221	944.605889	-0.37049	-0.00017536	0.25413	0.00012028	-0.11636	-5.5074E-05	473.3102794156711	54.541	0.40681	54.541	54.314	54.72	0					11	7	2	0	0	0	0.93661	1	19513	19513		21.747	4.8044	1	2068600			34666	5782;14672	25368	25543	33730	33730					0.1313701321332701
LTLLDLSSNKL	11	Unmodified	_LTLLDLSSNKL_					0	0	0		ENSG00000181754|ENST00000369864|AMIGO1	ENSG00000181754|ENST00000369864|AMIGO1	ENSG00000181754|ENST00000369864|AMIGO1	MULTI-MSMS	A375_MHC_IP_R2	2	406.6428527832031	3	406.243094	1215.70745	-0.29353	-0.00011924	0.43709	0.00017757	0.14357	5.8324E-05	406.24326440940115	61.7	1.1599	62.445	61.819	62.979	0.74503					50	22	4	0	0	0	0.61555	1	23389	23389		22.109	0.8675	1	6736200			34667	8359	25369	25544	33731	33731					0.10822795054582457
LTLLHVLH	8	Unmodified	_LTLLHVLH_					0	0	0		ENSG00000059377|ENST00000448866|TBXAS1;nc|ENSG00000059377|P24557-3|TBXAS1;nc|ENSG00000059377|P24557-2|TBXAS1	ENSG00000059377|ENST00000448866|TBXAS1	ENSG00000059377|ENST00000448866|TBXAS1	MULTI-SECPEP	A375_MHC_IP_R1	1	473.6981201171875	2	473.297645	944.580737	-0.4462	-0.00021118	0.26057	0.00012333	-0.18562	-8.7855E-05	473.2977836447348	53.479	0.45698	53.479	53.301	53.758	0					13	8	2	0	0	0	0.73517	1	19083	19083		34.187	7.8461	1	3283600			34668	1300	25370	25545	33732	33732					0.10622958410738192
LTLLIEPN	8	Unmodified	_LTLLIEPN_					0	0	0			REV__ENSG00000103313|ENST00000219596|MEFV	REV__ENSG00000103313|ENST00000219596|MEFV	MULTI-SECPEP	A375_MHC_IP_R2	2	912.9376831054688	1	912.54006	911.532783	-0.31698	-0.00028926	-1.5988	-0.001459	-1.9158	-0.0017482	912.5382151389455	126.26	0.45389	126.56	126.38	126.83	0.2951					13	8	2	0	0	0	0.97144	1	49485	49485		2.3027	0	1	11190000	+		34669	17269	25371	25546	33733	33733					0.07347839700048553
LTLLRKKWA	9	Unmodified	_LTLLRKKWA_					0	0	0		OTULIN|p.S191F|1|0.38|ENSG00000154124|chr5:14687624-14687624|C/T|missense_variant;ENSG00000154124|ENST00000284274|OTULIN	OTULIN|p.S191F|1|0.38|ENSG00000154124|chr5:14687624-14687624|C/T|missense_variant	OTULIN|p.S191F|1|0.38|ENSG00000154124|chr5:14687624-14687624|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	377.31304931640625	3	376.913243	1127.7179	0.23318	8.7888E-05	0.099432	3.7477E-05	0.33261	0.00012537	376.91323815452586	41.914	0.45866	41.914	41.674	42.132	0					22	8	3	0	0	0	0.22013	1	14505	14505		36.506	8.0117	1	4781300			34670	6059	25372	25547	33734	33734					0.15914867290302936
LTLLYDNRA	9	Unmodified	_LTLLYDNRA_					0	0	0			REV__nc|ENSG00000137478|O94868-3|FCHSD2	REV__nc|ENSG00000137478|O94868-3|FCHSD2	MSMS	A375_MHC_IP_R2	2	359.9451904296875	3	360.201229	1077.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.642	1	52.394	51.894	52.894	0.75225								0	0	0	0.15486	1	19439	19439		10.151	3.9448	1		+		34671	19010	25373	25548	33735	33735					0.0461712798901317
LTLMDTEFPS	10	Unmodified	_LTLMDTEFPS_					0	0	0			REV__ENSG00000130957|ENST00000375337|FBP2	REV__ENSG00000130957|ENST00000375337|FBP2	MULTI-SECPEP	A375_MHC_IP_R1	1	385.24884033203125	3	385.186369	1152.53728	0.20651	7.9543E-05	-2.2358	-0.00086118	-2.0293	-0.00078164	385.5206519316066	47.207	0.51489	47.207	46.952	47.467	0					19	9	4	0	0	0	0.93961	1	16667	16667		0.10794	0	1	2162200	+		34672	18576	25374	25549	33736	33736					-0.032890639393599486
LTLMIKIRM	9	Unmodified	_LTLMIKIRM_					0	0	0			REV__ENST00000360104.7_1_7:151873953-151874022:-|nuORF	REV__ENST00000360104.7_1_7:151873953-151874022:-|nuORF	MSMS	A375_MHC_IP_R2	2	373.6009521484375	3	373.564457	1117.67154	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.166	1	28.844	28.344	29.344	0.67857								0	0	0	0.15486	1	9700	9700		7.1017	0.06761	1		+		34673	23887	25375	25550	33737	33737					0.11741343072367272
LTLMLVFASFG	11	Unmodified	_LTLMLVFASFG_					0	0	0		ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MSMS	A375_MHC_IP_R2	2	600.0147705078125	2	599.83066	1197.64677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.144	1	85.88	85.38	86.38	0.73601								0	0	0	0.16191	1	32368	32368		8.7454	1.1365	1				34674	2380	25376	25551	33738	33738					0.055849864706488006
LTLNEIFRL	9	Unmodified	_LTLNEIFRL_					0	0	0			REV__tr|U7STY0|U7STY0_FUSNU4-hydroxybutyryl-CoAdehydratase/vinylacetyl-CoA-Delta-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01228PE=4SV=1	REV__tr|U7STY0|U7STY0_FUSNU4-hydroxybutyryl-CoAdehydratase/vinylacetyl-CoA-Delta-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01228PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	373.957275390625	3	373.557125	1117.64954	0.023389	8.7373E-06	-0.073825	-2.7578E-05	-0.050436	-1.8841E-05	373.5571700214654	30.557	0.80782	30.557	30.251	31.059	0					24	15	2	0	0	0	0.54812	1	9735	9735		24.991	0	1	3103800	+		34675	28517	25377	25552	33739	33739					0.09542577919796713
LTLNMWPGF	9	Unmodified	_LTLNMWPGF_					0	0	0			REV__ENST00000507576.1_1_6:17855827-17987694:-|nuORF	REV__ENST00000507576.1_1_6:17855827-17987694:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	539.2074584960938	2	539.773145	1077.53174	-0.98657	-0.00053252	2.1304	0.0011499	1.1438	0.00061741	540.2751678755872	55.838	0.15274	56.589	56.489	56.642	0.75014					4	2	2	0	0	0	0.58271	1	21068	21068		14.838	0	1	533640	+		34676	25568	25378	25553	33740	33740					-0.003926979405150632
LTLPRNLRK	9	Unmodified	_LTLPRNLRK_					0	0	0			REV__ACO2|p.R56C|1|0.33|ENSG00000100412|chr22:41499855-41499855|C/T|missense_variant	REV__ACO2|p.R56C|1|0.33|ENSG00000100412|chr22:41499855-41499855|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	556.205810546875	2	555.858932	1109.70331	-0.86242	-0.00047938	0.083838	4.6602E-05	-0.77858	-0.00043278	555.8588984257253	62.462	0.50766	63.205	62.976	63.484	0.74263					15	9	2	0	0	0	0.80535	1	23729	23729		3.9444	0	1	4748700	+		34677	15296	25379	25554	33741	33741					0.15284795142179064
LTLPVRIAE	9	Unmodified	_LTLPVRIAE_					0	0	0			REV__SIRPG|p.P252L|1|0.49|ENSG00000089012|chr20:1635593-1635593|G/A|missense_variant	REV__SIRPG|p.P252L|1|0.49|ENSG00000089012|chr20:1635593-1635593|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	506.6529541015625	2	506.313492	1010.61243	-0.39158	-0.00019826	-0.050826	-2.5734E-05	-0.44241	-0.000224	506.31380931034903	60.694	0.5084	60.694	60.414	60.922	0					13	9	2	0	0	0	0.76187	1	21936	21936		3.9444	0	1	1322900	+		34678	27969	25380	25555	33742	33742					0.1075490637402936
LTLRCYEFL	9	Unmodified	_LTLRCYEFL_					0	0	0		ENST00000506043.1_1_X:77218054-77218261:+|nuORF	ENST00000506043.1_1_X:77218054-77218261:+|nuORF	ENST00000506043.1_1_X:77218054-77218261:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	579.1649780273438	2	579.30481	1156.59507	0.091066	5.2755E-05	0.32214	0.00018662	0.4132	0.00023937	579.3049757493002	112.24	0.40555	112.24	111.98	112.38	0					16	7	3	0	0	0	0.53748	1	41063	41063		30.637	11.38	1	1288300			34679	12848	25381	25556	33743	33743					0.02303242776724801
LTLRCYEFL	9	Unmodified	_LTLRCYEFL_					0	0	0		ENST00000506043.1_1_X:77218054-77218261:+|nuORF	ENST00000506043.1_1_X:77218054-77218261:+|nuORF	ENST00000506043.1_1_X:77218054-77218261:+|nuORF	MSMS	A375_MHC_IP_R2	2	579.70458984375	2	579.30481	1156.59507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.31	1	112.04	111.54	112.54	0.73692								0	0	0	0.14851	1	41970	41970		24.021	3.5669	1				34680	12848	25381	25556	33744	33744					0.02303242776724801
LTLRGDRVF	9	Unmodified	_LTLRGDRVF_					0	0	0		ENSG00000181751|ENST00000319933|MACIR	ENSG00000181751|ENST00000319933|MACIR	ENSG00000181751|ENST00000319933|MACIR	MULTI-SECPEP	A375_MHC_IP_R2	2	359.9451904296875	3	359.545219	1075.61383	-0.42379	-0.00015237	0.38241	0.00013749	-0.041384	-1.4879E-05	359.5452581978274	51.543	0.45601	52.296	52.017	52.473	0.75225					10	8	2	0	0	0	0.73008	1	19439	19439		5.4027	0	1	2427800			34681	8358	25382	25557	33745	33745					0.07904540462800469
LTLRNTTLF	9	Unmodified	_LTLRNTTLF_					0	0	0		nc|ENSG00000291158|P0C866|LINC00869	nc|ENSG00000291158|P0C866|LINC00869	nc|ENSG00000291158|P0C866|LINC00869	MULTI-MSMS	A375_MHC_IP_R1	1	360.6131286621094	3	360.213358	1077.61824	0.24832	8.945E-05	-0.55336	-0.00019933	-0.30503	-0.00010988	360.2131342773869	43.39	0.55981	43.39	43.197	43.757	0					25	10	3	0	0	0	0.54799	1	15066	15066		17.443	0.87677	1	8503200			34682	14961	25383	25558	33746	33746					0.0825400488570267
LTLRPLPLLRL	11	Unmodified	_LTLRPLPLLRL_					0	0	0			REV__ENST00000489935.1_1_1:110754015-110754261:+|nuORF	REV__ENST00000489935.1_1_1:110754015-110754261:+|nuORF	MSMS	A375_MHC_IP_R1	1	652.9957275390625	2	652.942465	1303.87038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.898	1	98.898	98.398	99.398	0								0	0	0	0.16334	1	36333	36333		1.3295	1.3295	1		+		34683	25378	25384	25559	33747	33747					0.23059642967086802
LTLRPSISL	9	Unmodified	_LTLRPSISL_					0	0	0			REV__nc|ENSG00000204267|Q03519-2|TAP2	REV__nc|ENSG00000204267|Q03519-2|TAP2	MULTI-SECPEP	A375_MHC_IP_R2	2	499.98284912109375	2	500.313492	998.612431	-0.59284	-0.00029661	0.37649	0.00018836	-0.21635	-0.00010824	500.31377246417026	31.69	0.35512	32.427	32.249	32.605	0.73691					12	6	3	0	0	0	0.75466	1	11155	11155		1.8442	0	1	1466400	+		34684	22502	25385	25560	33748	33748					0.1130690637405678
LTLRRFLVWTY	11	Unmodified	_LTLRRFLVWTY_					0	0	0		TUBGCP3|p.L367F|1|0.15|ENSG00000126216|chr13:112547689-112547689|G/A|missense_variant	TUBGCP3|p.L367F|1|0.15|ENSG00000126216|chr13:112547689-112547689|G/A|missense_variant	TUBGCP3|p.L367F|1|0.15|ENSG00000126216|chr13:112547689-112547689|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	490.6549072265625	3	489.953878	1466.8398	-0.06517	-3.193E-05	1.8583	0.00091048	1.7931	0.00087855	489.9546037968915	69.011	0.40414	69.011	68.769	69.173	0					10	7	2	0	0	0	1.0012	1	25054	25054		1.2148	0.88556	1	1222500			34685	30099	25386	25561	33749	33749					0.12505864582021786
LTLSHLVLC	9	Unmodified	_LTLSHLVLC_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MSMS	A375_MHC_IP_R1	1	499.687255859375	2	499.788795	997.563038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.411	1	56.411	55.911	56.911	0								0	0	0	0.15283	1	20208	20208		16.942	4.4107	1		+		34686	17912	25387	25562	33750	33750					0.06415875093580325
LTLSQILFFFF	11	Unmodified	_LTLSQILFFFF_					0	0	0			REV__ENST00000489097.5_1_1:6526697-6527309:-|nuORF	REV__ENST00000489097.5_1_1:6526697-6527309:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	688.8565673828125	2	688.386657	1374.75876	-0.62416	-0.00042967	-0.56984	-0.00039227	-1.194	-0.00082194	688.3861756117348	132.24	1.6264	132.43	131.95	133.58	0.18953					59	31	2	0	0	0	0.73647	1	52417	52417		2.7352	0	1	52637000	+		34687	25366	25388	25563	33751	33751					0.08637163819275884
LTLTHTQVL	9	Unmodified	_LTLTHTQVL_					0	0	0			REV__TTC24|p.S419L|1|0.94|ENSG00000187862|chr1:156584881-156584881|C/T|missense_variant	REV__TTC24|p.S419L|1|0.94|ENSG00000187862|chr1:156584881-156584881|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	513.393310546875	2	513.303124	1024.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.757	1	77.757	77.257	78.257	0								0	0	0	0.14851	1	28374	28374		24.021	0	1		+		34688	28922	25389	25564	33752	33752					0.0803831599437217
LTMEWADVLY	10	Oxidation (M)	_LTM(Oxidation (M))EWADVLY_		LTM(1)EWADVLY		LTM(46)EWADVLY	0	0	1			REV__ENSG00000144815|ENST00000273347|NXPE3	REV__ENSG00000144815|ENST00000273347|NXPE3	MULTI-MSMS	A375_MHC_IP_R2	2	629.1929321289062	2	628.797014	1255.57948	-1.0227	-0.0006431	0.6772	0.00042582	-0.34554	-0.00021728	628.797420981029	40.752	0.66214	41.526	41.335	41.997	0.77451					29	12	3	0	0	0	0.23156	1	15251	15251		46.021	6.0713	1	8679900	+		34689	19446	25390	25565	33753	33753		479			-0.03809088530988447
LTMKMRFF	8	Unmodified	_LTMKMRFF_					0	0	0			REV__ENSG00000147117|ENST00000377073|ZNF157	REV__ENSG00000147117|ENST00000377073|ZNF157	MULTI-SECPEP	A375_MHC_IP_R2	2	359.272705078125	3	358.526003	1072.55618	-0.84777	-0.00030395	-1.9661	-0.00070491	-2.8139	-0.0010089	358.5256598030512	29.661	0.8586	30.36	29.88	30.739	0.69872					20	16	2	0	0	0	0.972	1	10219	10219		5.7319	0	1	2012900	+		34690	19568	25391	25566	33754	33754					0.022802389413527635
LTMLCWMSYF	10	Unmodified	_LTMLCWMSYF_					0	0	0		ENSG00000184857|ENST00000333050|TMEM186	ENSG00000184857|ENST00000333050|TMEM186	ENSG00000184857|ENST00000333050|TMEM186	MULTI-MSMS	A375_MHC_IP_R1	1	432.1502685546875	3	432.193813	1293.55961	-0.23621	-0.00010209	-1.9666	-0.00084995	-2.2028	-0.00095204	432.1931364915214	24.714	0.65664	24.714	24.296	24.953	0					15	12	2	0	0	0	0.71245	1	7045	7045		3.5871	0	1	1848500			34691	8613	25392	25567	33755	33755					-0.07542879066932073
LTMLGLCLVDL	11	Unmodified	_LTMLGLCLVDL_					0	0	0			REV__nc|ENSG00000180663|Q9BXE9|VN1R3	REV__nc|ENSG00000180663|Q9BXE9|VN1R3	MULTI-SECPEP	A375_MHC_IP_R1	1	398.3118591308594	3	397.555627	1189.64505	-0.12456	-4.9518E-05	-2.2916	-0.00091104	-2.4162	-0.00096056	397.88878490455716	43.884	0.66371	43.884	43.706	44.37	0					18	12	2	0	0	0	0.9836	1	15251	15251		6.2344	0	1	2351600	+		34692	27388	25393	25568	33756	33756					0.057816093903738874
LTMLLMLKL	9	Unmodified	_LTMLLMLKL_					0	0	0		nc|ENSG00000122490|Q8N2U9-3|SLC66A2;ENST00000466449.5_1_18:77690306-77703530:-|nuORF;ENST00000351365.7_1_18:77663978-77709700:-|nuORF;nc|ENSG00000122490|Q8N2U9-2|SLC66A2;ENSG00000122490|ENST00000397778|SLC66A2	nc|ENSG00000122490|Q8N2U9-3|SLC66A2;ENST00000351365.7_1_18:77663978-77709700:-|nuORF	ENST00000351365.7_1_18:77663978-77709700:-|nuORF	MSMS	A375_MHC_IP_R1	1	359.4283752441406	3	359.225442	1074.6545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.93	1	30.93	30.43	31.43	0								0	0	0	0.15486	1	9877	9877		2.2828	0	1				34693	14571;3785	25394	25569	33757	33757					0.12015422466561176
LTMMMTTV	8	Unmodified	_LTMMMTTV_					0	0	0		HEATR5B|p.N1450Ifs*20|1|0.31|ENSG00000008869|chr2:37008789-37008789|A/-|frameshift_variant	HEATR5B|p.N1450Ifs*20|1|0.31|ENSG00000008869|chr2:37008789-37008789|A/-|frameshift_variant	HEATR5B|p.N1450Ifs*20|1|0.31|ENSG00000008869|chr2:37008789-37008789|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	464.6214294433594	2	464.221042	926.427532	-0.99554	-0.00046215	0.94552	0.00043893	-0.050016	-2.3218E-05	464.22185265364067	56.576	1.1734	57.326	56.745	57.918	0.75015					48	22	4	0	0	0	0.7338	1	21373	21373		24.674	1.5255	1	15181000			34694	14103	25395	25570	33758	33758					-0.03862484083890649
LTMPLMSW	8	Unmodified	_LTMPLMSW_					0	0	0			REV__ENST00000527247.5_1_11:126110850-126110940:+|nuORF	REV__ENST00000527247.5_1_11:126110850-126110940:+|nuORF	MSMS	A375_MHC_IP_R1	1	489.67364501953125	2	489.742999	977.471446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.81	1	65.81	65.31	66.31	0								0	0	0	0.16876	1	23829	23829		18.135	1.1927	1		+		34695	25784	25396	25571	33759	33759					-0.018191315952435616
LTMPLMSW	8	Unmodified	_LTMPLMSW_					0	0	0			REV__ENST00000527247.5_1_11:126110850-126110940:+|nuORF	REV__ENST00000527247.5_1_11:126110850-126110940:+|nuORF	MSMS	A375_MHC_IP_R2	2	489.6736755371094	2	489.742999	977.471446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.968	1	65.706	65.206	66.206	0.73811								0	0	0	0.16876	1	24632	24632		24.674	1.5255	1		+		34696	25784	25396	25571	33760	33760					-0.018191315952435616
LTMRKREVYL	10	Unmodified	_LTMRKREVYL_					0	0	0		ENST00000229214.8_1_12:75892610-75892730:-|nuORF	ENST00000229214.8_1_12:75892610-75892730:-|nuORF	ENST00000229214.8_1_12:75892610-75892730:-|nuORF	MSMS	A375_MHC_IP_R2	2	654.7741088867188	2	654.876465	1307.73838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.03	1	133.19	132.69	133.69	0.16487								0	0	0	0.15591	1	52335	52335		1.6526	0	1				34697	10131	25397	25572	33761	33761					0.09681669887822864
LTNCVFMTF	9	Unmodified	_LTNCVFMTF_					0	0	0		nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;nc|ENSG00000196876|Q9UQD0-4|SCN8A;ENSG00000196876|ENST00000627620|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	MULTI-MSMS	A375_MHC_IP_R1	1	538.7162475585938	2	538.251188	1074.48782	-0.51771	-0.00027866	-0.81664	-0.00043955	-1.3343	-0.00071821	538.2507382897064	35.395	0.40723	35.395	35.218	35.625	0					12	7	2	0	0	0	0.63811	1	11832	11832		12.532	0.89125	1	1683800			34698	14841	25398	25573	33762	33762					-0.046440504291695106
LTNEGNSSNWL	11	Unmodified	_LTNEGNSSNWL_					0	0	0			REV__ENSG00000049167|ENST00000676185|ERCC8	REV__ENSG00000049167|ENST00000676185|ERCC8	MULTI-SECPEP	A375_MHC_IP_R1	1	618.2140502929688	2	617.788566	1233.56258	-0.28979	-0.00017903	0.29387	0.00018155	0.0040786	2.5197E-06	617.7885624934269	101.74	0.35173	101.74	101.5	101.85	0					8	6	2	0	0	0	0.99018	1	37337	37337		4.5289	1.7937	1	432370	+		34699	16378	25399	25574	33763	33763					-0.04485873092562542
LTNIWSYISHI	11	Unmodified	_LTNIWSYISHI_					0	0	0			REV__TMC5|p.D883N|1|0.09|ENSG00000103534|chr16:19490468-19490468|G/A|missense_variant	REV__TMC5|p.D883N|1|0.09|ENSG00000103534|chr16:19490468-19490468|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	449.1363525390625	3	449.574955	1345.70304	-0.35629	-0.00016018	0.033249	1.4948E-05	-0.32304	-0.00014523	449.5748588297276	40.104	0.30401	40.878	40.676	40.98	0.77451					9	5	2	0	0	0	0.99732	1	14867	14867		4.1166	0	1	1150900	+		34700	28126	25400	25575	33764	33764					0.044013306316628587
LTNLEVKKL	9	Unmodified	_LTNLEVKKL_					0	0	0		TSPYL6|p.E284K|1|0.17|ENSG00000178021|chr2:54255302-54255302|C/T|missense_variant	TSPYL6|p.E284K|1|0.17|ENSG00000178021|chr2:54255302-54255302|C/T|missense_variant	TSPYL6|p.E284K|1|0.17|ENSG00000178021|chr2:54255302-54255302|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	353.6035461425781	3	353.225375	1056.6543	-0.51663	-0.00018249	2.5953	0.00091671	2.0786	0.00073423	353.22527494217127	19.451	0.55809	20.054	19.833	20.392	0.60308					22	10	4	0	0	0	0.6656	1	5927	5927		6.6304	0.43853	1	1148100			34701	30089	25401	25576	33765	33765					0.12823462062578983
LTNLHFPPPL	10	Unmodified	_LTNLHFPPPL_					0	0	0		CRTC2|p.D277G|1|0.45|ENSG00000160741|chr1:153952185-153952185|T/C|missense_variant;ENST00000487235.5_1_1:153921840-153927447:-|nuORF;ENSG00000160741|ENST00000368633|CRTC2	CRTC2|p.D277G|1|0.45|ENSG00000160741|chr1:153952185-153952185|T/C|missense_variant	CRTC2|p.D277G|1|0.45|ENSG00000160741|chr1:153952185-153952185|T/C|missense_variant	MSMS	A375_MHC_IP_R2	2	383.6178283691406	3	383.553603	1147.63898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.98	1	35.743	35.243	36.243	0.76338								0	0	0	0.15332	1	12658	12658		5.7834	0	1				34702	665	25402	25577	33766	33766					0.07106595265395299
LTNPSGGKTS	10	Unmodified	_LTNPSGGKTS_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.K10017Ifs*3|1|0.07|ENSG00000181143|chr19:8946720-8946721|-/A|frameshift_variant;MUC16|p.L10196Yfs*32|1|0.2|ENSG00000181143|chr19:8946183-8946183|A/-|frameshift_variant;MUC16|p.N7637Ifs*2|1|0.95|ENSG00000181143|chr19:8953860-8953860|T/-|frameshift_variant;MUC16|p.Q4739Sfs*3|1|0.33|ENSG00000181143|chr19:8962555-8962556|-/A|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	A375_MHC_IP_R1	1	481.6504821777344	2	481.251089	960.487624	-0.35511	-0.0001709	-0.43223	-0.00020801	-0.78734	-0.00037891	481.25095429025197	104.01	0.71176	104.01	103.63	104.34	0					32	13	3	0	0	0	0.81532	1	38157	38157		10.151	0	1	4895500			34703	8335	25403	25578	33767	33767					0.0057998916687438395
LTNRQVLSP	9	Unmodified	_LTNRQVLSP_					0	0	0			REV__ENSG00000173517|ENST00000682557|PEAK1	REV__ENSG00000173517|ENST00000682557|PEAK1	MULTI-SECPEP	A375_MHC_IP_R1	1	515.036376953125	2	514.298373	1026.58219	-0.76198	-0.00039189	0.19312	9.9321E-05	-0.56886	-0.00029257	514.2983766115187	132.75	2.4398	132.75	132.18	134.62	0					65	47	2	0	0	0	0.79191	1	51780	51780		6.7232	3.4419	1	4029400	+		34704	21227	25404	25579	33768	33768					0.0699654770885445
LTNRRFPVW	9	Unmodified	_LTNRRFPVW_					0	0	0		nc|ENSG00000118961|Q9H6V9-2|LDAH;ENSG00000118961|ENST00000237822|LDAH	nc|ENSG00000118961|Q9H6V9-2|LDAH	nc|ENSG00000118961|Q9H6V9-2|LDAH	MULTI-SECPEP	A375_MHC_IP_R1	1	594.3562622070312	2	594.835457	1187.65636	-0.31837	-0.00018938	-0.31927	-0.00018992	-0.63765	-0.0003793	595.3367916692143	77.841	0.40838	77.841	77.69	78.099	0					12	7	2	0	0	0	0.77834	1	28450	28450		4.756	0.81161	1	944180			34705	3565	25405	25580	33769	33769					0.07003935591023946
LTNSMNDDML	10	Unmodified	_LTNSMNDDML_					0	0	0			REV__nc|ENSG00000185697|P10243-2|MYBL1	REV__nc|ENSG00000185697|P10243-2|MYBL1	MULTI-MSMS	A375_MHC_IP_R2	2	577.6429443359375	2	577.246831	1152.47911	-0.17475	-0.00010087	-3.3608	-0.00194	-3.5356	-0.0020409	577.2431553584356	76.464	0.81219	77.205	76.843	77.655	0.74052					48	15	5	0	0	0	0.6806	1	28983	28983		14.838	2.3067	1	11272000	+		34706	21912	25406	25581	33770	33770					-0.09103068856302343
LTNTHFDLT	9	Unmodified	_LTNTHFDLT_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B	REV__ENSG00000168702|ENST00000389484|LRP1B	MULTI-SECPEP	A375_MHC_IP_R1	1	531.666259765625	2	531.266739	1060.51892	-0.80111	-0.0004256	0.32294	0.00017157	-0.47817	-0.00025404	531.2668024719471	29.084	1.2654	29.084	28.188	29.453	0					36	24	2	0	0	0	0.56537	1	8916	8916		29.082	1.4528	1	2345300	+		34707	20879	25407	25582	33771	33771					-0.008914377990549838
LTNTWLDDR	9	Unmodified	_LTNTWLDDR_					0	0	0		nc|ENSG00000120915|P34913-3|EPHX2;nc|ENSG00000120915|P34913-2|EPHX2;ENSG00000120915|ENST00000521400|EPHX2;EPHX2|p.N359Ifs*43|1|0.12|ENSG00000120915|chr8:27525378-27525378|A/-|frameshift_variant;ENST00000520623.5_1_8:27348689-27396319:+|nuORF	nc|ENSG00000120915|P34913-3|EPHX2	nc|ENSG00000120915|P34913-3|EPHX2	MULTI-SECPEP	A375_MHC_IP_R2	2	378.26458740234375	3	378.524372	1132.55129	-0.18818	-7.123E-05	0.027693	1.0483E-05	-0.16048	-6.0747E-05	378.5243927086448	51.88	0.61107	52.632	52.372	52.983	0.75225					17	11	2	0	0	0	0.63327	1	19567	19567		8.9762	0.53194	1	2292400			34708	3699	25408	25583	33772	33772					-0.009686503960665505
LTNYNLFRR	9	Unmodified	_LTNYNLFRR_					0	0	0			REV__tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	REV__tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	599.2293090820312	2	598.830372	1195.64619	-0.89004	-0.00053299	-1.0936	-0.00065485	-1.9836	-0.0011878	598.8299085373787	59.84	0.45502	60.587	60.4	60.855	0.74714					13	8	2	0	0	0	0.71341	1	22699	22699		18.146	14.865	1	1415500	+		34709	28466	25409	25584	33773	33773					0.05619327865792911
LTPCTEKIRF	10	Unmodified	_LTPCTEKIRF_					0	0	0		ENSG00000167967|ENST00000301727|E4F1;ENST00000569796.1_1_16:2282158-2283271:+|nuORF	ENSG00000167967|ENST00000301727|E4F1	ENSG00000167967|ENST00000301727|E4F1	MSMS	A375_MHC_IP_R2	2	604.3187866210938	2	604.328816	1206.64308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.245	1	89.977	89.477	90.477	0.7318								0	0	0	0.15265	1	33964	33964		12.241	2.1667	1				34710	7242	25410	25585	33774	33774					0.0480231669675959
LTPEALVGAGG	11	Unmodified	_LTPEALVGAGG_					0	0	0		ENSG00000160957|ENST00000617875|RECQL4	ENSG00000160957|ENST00000617875|RECQL4	ENSG00000160957|ENST00000617875|RECQL4	MSMS	A375_MHC_IP_R2	2	492.7101135253906	2	492.771657	983.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.923	1	79.668	79.168	80.168	0.74474								0	0	0	0.14085	1	29955	29955		26.268	2.2476	1				34711	6452	25411	25586	33775	33775					0.03633750206336117
LTPEIMAPIL	10	Unmodified	_LTPEIMAPIL_					0	0	0		ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	MULTI-SECPEP	A375_MHC_IP_R2	2	549.7178955078125	2	549.317386	1096.62022	-0.70714	-0.00038844	1.1131	0.00061147	0.406	0.00022302	549.317929547398	133.46	0.30206	133.63	133.5	133.8	0.16487					9	5	2	0	0	0	0.93799	1	52554	52554		6.7232	6.7232	1	3935700			34712	4266	25412	25587	33776	33776					0.0757729757931429
LTPELPRYR	9	Unmodified	_LTPELPRYR_					0	0	0			REV__ENSG00000162814|ENST00000366933|SPATA17	REV__ENSG00000162814|ENST00000366933|SPATA17	MULTI-MSMS	A375_MHC_IP_R1	1	382.6204528808594	3	382.220624	1143.64004	0.39709	0.00015178	-0.24417	-9.3325E-05	0.15293	5.8452E-05	382.55484006925604	28.694	0.30449	28.694	28.491	28.795	0					9	5	2	0	0	0	0.69884	1	8918	8918		7.1017	0.86737	1	2750600	+		34713	20310	25413	25588	33777	33777					0.0739680963426963
LTPEPEHEPNP	11	Unmodified	_LTPEPEHEPNP_					0	0	0			REV__ENSG00000132793|ENST00000373257|LPIN3	REV__ENSG00000132793|ENST00000373257|LPIN3	MULTI-SECPEP	A375_MHC_IP_R1	1	629.732421875	2	630.298767	1258.58298	-0.45759	-0.00028842	-0.32965	-0.00020778	-0.78724	-0.0004962	630.2983242329797	51.63	0.45497	51.63	51.424	51.879	0					13	8	2	0	0	0	0.90673	1	18375	18375		18.373	6.8784	1	3355500	+		34714	18682	25414	25589	33778	33778					-0.03596702432764687
LTPGAYWSY	9	Unmodified	_LTPGAYWSY_					0	0	0			REV__CEACAM16|p.A50T|1|0.17|ENSG00000213892|chr19:44703459-44703459|G/A|missense_variant	REV__CEACAM16|p.A50T|1|0.17|ENSG00000213892|chr19:44703459-44703459|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	528.6847534179688	2	529.2531	1056.49165	-0.70228	-0.00037169	-0.89012	-0.0004711	-1.5924	-0.00084278	529.252610201127	27.778	1.1152	28.457	28.098	29.214	0.67857					27	21	2	0	0	0	0.74412	1	9851	9851		10.074	0	1	2182200	+		34715	15631	25415	25590	33779	33779					-0.034339213394332546
LTPGTVHLAP	10	Unmodified	_LTPGTVHLAP_					0	0	0		ENST00000370179.7_1_20:62153458-62153500:+|nuORF	ENST00000370179.7_1_20:62153458-62153500:+|nuORF	ENST00000370179.7_1_20:62153458-62153500:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	503.68890380859375	2	503.290017	1004.56548	-0.96131	-0.00048382	-0.27264	-0.00013722	-1.234	-0.00062104	503.2897948678424	51.899	0.45874	52.651	52.473	52.932	0.75225					13	7	2	0	0	0	0.65982	1	19571	19571		26.884	11.036	1	3544300			34716	11148	25416	25591	33780	33780					0.0633804682288428
LTPKAQQAL	9	Unmodified	_LTPKAQQAL_					0	0	0		ENSG00000152223|ENST00000282041|EPG5	ENSG00000152223|ENST00000282041|EPG5	ENSG00000152223|ENST00000282041|EPG5	MULTI-SECPEP	A375_MHC_IP_R1	1	485.68975830078125	2	485.290017	968.565481	-0.21751	-0.00010556	0.11093	5.3832E-05	-0.10658	-5.1723E-05	485.2898544543332	33.823	0.40363	33.823	33.597	34.001	0					17	7	3	0	0	0	0.04395	1	11089	11089		81.89	24.419	1	5061500			34717	5953	25417	25592	33781	33781					0.07994046822898326
LTPKAQQAL	9	Unmodified	_LTPKAQQAL_					0	0	0		ENSG00000152223|ENST00000282041|EPG5	ENSG00000152223|ENST00000282041|EPG5	ENSG00000152223|ENST00000282041|EPG5	MULTI-SECPEP	A375_MHC_IP_R2	2	485.6894226074219	2	485.290017	968.565481	-0.72304	-0.00035088	0.24514	0.00011897	-0.4779	-0.00023192	485.28995922524285	33.045	0.45869	33.792	33.579	34.038	0.74721					17	8	3	0	0	0	0.13064	1	11822	11822		56.177	10.477	1	4961700			34718	5953	25417	25592	33782	33782					0.07994046822898326
LTPLITPPR	9	Unmodified	_LTPLITPPR_					0	0	0			REV__TEKT5|p.R82H|1|0.35|ENSG00000153060|chr16:10694629-10694629|C/T|missense_variant	REV__TEKT5|p.R82H|1|0.35|ENSG00000153060|chr16:10694629-10694629|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	504.7159118652344	2	504.316035	1006.61752	-0.52824	-0.0002664	0.26432	0.0001333	-0.26392	-0.0001331	504.3161948894389	90.241	0.86197	90.241	89.88	90.742	0					30	16	3	0	0	0	0.59266	1	33127	33127		15.248	2.206	1	3155500	+		34719	19824	25418	25593	33783	33783					0.11447210236644878
LTPLITPPR	9	Unmodified	_LTPLITPPR_					0	0	0			REV__TEKT5|p.R82H|1|0.35|ENSG00000153060|chr16:10694629-10694629|C/T|missense_variant	REV__TEKT5|p.R82H|1|0.35|ENSG00000153060|chr16:10694629-10694629|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	504.7156677246094	2	504.316035	1006.61752	-0.59493	-0.00030003	0.29854	0.00015056	-0.29639	-0.00014948	504.3162023722451	89.176	0.96053	89.907	89.533	90.493	0.7318					26	18	2	0	0	0	0.4465	1	33924	33924		19.362	3.2128	1	3102500	+		34720	19824	25418	25593	33784	33784					0.11447210236644878
LTPLRIRKM	9	Unmodified	_LTPLRIRKM_					0	0	0			REV__chr15:94066879-94070524|202|28.65|0.98|4.87|-|2|LINC01579,LINC01579|1	REV__chr15:94066879-94070524|202|28.65|0.98|4.87|-|2|LINC01579,LINC01579|1	MSMS	A375_MHC_IP_R2	2	564.3212280273438	2	564.357711	1126.70087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.498	1	95.243	94.743	95.743	0.74474								0	0	0	0.15486	1	35911	35911		4.3292	2.0265	1		+		34721	15718	25419	25594	33785	33785					0.14258623412843008
LTPPCHAL	8	Unmodified	_LTPPCHAL_					0	0	0			REV__KMT2D|p.P2390Rfs*36|1|0.37|ENSG00000167548|chr12:49040601-49040601|G/-|frameshift_variant	REV__KMT2D|p.P2390Rfs*36|1|0.37|ENSG00000167548|chr12:49040601-49040601|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	851.84326171875	1	851.444385	850.437109	-0.67725	-0.00057664	-0.048496	-4.1292E-05	-0.72574	-0.00061793	851.4442475407535	145.48	0.096771	145.48	145.42	145.52	0					18	11	2	0	0	0	0.77839	1	55755	55755		0.79363	0	1	178300	+		34722	26866	25420	25595	33786	33786					0.005907883081363252
LTPQENESL	9	Unmodified	_LTPQENESL_					0	0	0		ENSG00000106299|ENST00000223023|WASL	ENSG00000106299|ENST00000223023|WASL	ENSG00000106299|ENST00000223023|WASL	MULTI-MSMS	A375_MHC_IP_R2	2	516.1555786132812	2	515.756204	1029.49785	-0.72067	-0.00037169	-0.33685	-0.00017373	-1.0575	-0.00054543	515.7557882939375	101.93	0.71173	102.69	102.36	103.07	0.76428					23	13	2	0	0	0	0.41409	1	38645	38645		24.021	7.0783	1	1676300			34723	2681	25421	25596	33787	33787					-0.01571447898572842
LTPQRQLIW	9	Unmodified	_LTPQRQLIW_					0	0	0			REV__ENSG00000174482|ENST00000698399|LINGO2	REV__ENSG00000174482|ENST00000698399|LINGO2	MULTI-SECPEP	A375_MHC_IP_R1	1	577.52587890625	2	577.837665	1153.66078	-0.19152	-0.00011067	0.22296	0.00012884	0.031441	1.8168E-05	577.8377668981133	99.648	0.60405	99.648	99.371	99.975	0					16	11	2	0	0	0	0.71341	1	36629	36629		8.7454	0	1	2331800	+		34724	21287	25422	25597	33788	33788					0.09009400013951563
LTPQRQLIW	9	Unmodified	_LTPQRQLIW_					0	0	0			REV__ENSG00000174482|ENST00000698399|LINGO2	REV__ENSG00000174482|ENST00000698399|LINGO2	MULTI-SECPEP	A375_MHC_IP_R2	2	578.4622802734375	2	577.837665	1153.66078	-0.10952	-6.3283E-05	-0.14298	-8.2622E-05	-0.2525	-0.0001459	577.8373957881075	98.618	0.55714	99.377	99.201	99.758	0.75977					13	10	2	0	0	0	0.65527	1	37479	37479		12.241	5.1389	1	2432900	+		34725	21287	25422	25597	33789	33789					0.09009400013951563
LTPQWARWRRL	11	Unmodified	_LTPQWARWRRL_					0	0	0		ENST00000598330.1_1_19:44031310-44031349:-|nuORF	ENST00000598330.1_1_19:44031310-44031349:-|nuORF	ENST00000598330.1_1_19:44031310-44031349:-|nuORF	MSMS	A375_MHC_IP_R1	1	741.8272094726562	2	741.925669	1481.83679	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.4	1	132.4	131.9	132.9	0								0	0	0	0.1628	1	51049	51049		2.4985	1.0166	1				34726	13852	25423	25598	33790	33790					0.11514034247852578
LTPRLLHVVAK	11	Unmodified	_LTPRLLHVVAK_					0	0	0			REV__ENSG00000099991|ENST00000263119|CABIN1	REV__ENSG00000099991|ENST00000263119|CABIN1	MSMS	A375_MHC_IP_R1	1	416.58758544921875	3	416.271319	1245.79213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.698	1	23.698	23.198	24.198	0								0	0	0	0.16269	1	6562	6562		4.7159	1.8726	1		+		34727	17038	25424	25599	33791	33791					0.1790621038185236
LTPRLLKFWKR	11	Unmodified	_LTPRLLKFWKR_					0	0	0		ENSG00000135372|ENST00000257829|NAT10;nc|ENSG00000135372|Q9H0A0-2|NAT10	ENSG00000135372|ENST00000257829|NAT10	ENSG00000135372|ENST00000257829|NAT10	MULTI-SECPEP	A375_MHC_IP_R2	2	729.8973999023438	2	729.458813	1456.90307	-0.79578	-0.00058049	-0.44695	-0.00032603	-1.2427	-0.00090653	729.9613100045307	108.26	0.25599	109.02	108.81	109.07	0.75436					5	4	2	0	0	0	1.0008	1	40832	40832		0	0	1	826900			34728	4676	25425	25600	33792	33792					0.19289850089921856
LTPTQRESI	9	Unmodified	_LTPTQRESI_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;ENST00000470782.5_1_17:15935612-15971511:-|nuORF	nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-MSMS	A375_MHC_IP_R1	1	522.685546875	2	522.787838	1043.56112	-0.4179	-0.00021847	0.086814	4.5385E-05	-0.33108	-0.00017309	522.7878445649733	56.88	0.96959	56.88	56.548	57.518	0					28	18	2	0	0	0	0.55471	1	20562	20562		17.113	7.039	1	13064000			34729	5209	25426	25601	33793	33793					0.04108537609317864
LTPVDIKLN	9	Unmodified	_LTPVDIKLN_					0	0	0			REV__ENSG00000125780|ENST00000381458|TGM3	REV__ENSG00000125780|ENST00000381458|TGM3	MULTI-MSMS	A375_MHC_IP_R2	2	508.5165710449219	2	506.8055	1011.59645	-0.74277	-0.00037644	-0.15934	-8.0752E-05	-0.9021	-0.00045719	506.8053588786673	77.227	1.3206	77.97	77.303	78.624	0.74293					58	25	4	0	0	0	0.69674	1	29503	29503		7.2892	0	1	26290000	+		34730	18363	25427	25602	33794	33794					0.09111200137135711
LTPVTAVSVH	10	Unmodified	_LTPVTAVSVH_					0	0	0		ENSG00000148468|ENST00000378116|FAM171A1	ENSG00000148468|ENST00000378116|FAM171A1	ENSG00000148468|ENST00000378116|FAM171A1	MULTI-SECPEP	A375_MHC_IP_R2	2	512.343505859375	2	512.295299	1022.57605	-0.81118	-0.00041556	-2.4862	-0.0012737	-3.2974	-0.0016892	512.2950180520693	80.697	0.20297	81.442	81.265	81.468	0.74474					5	3	2	0	0	0	0.87163	1	30589	30589		19.257	11.968	1	334900			34731	5743	25428	25603	33795	33795					0.06566029477323809
LTPWNAIKAKL	11	Unmodified	_LTPWNAIKAKL_					0	0	0			REV__RASGRF2|p.R313K|1|0.24|ENSG00000113319|chr5:81080171-81080171|G/A|missense_variant	REV__RASGRF2|p.R313K|1|0.24|ENSG00000113319|chr5:81080171-81080171|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	419.32244873046875	3	418.923807	1253.74959	0.44766	0.00018754	-1.9338	-0.00081011	-1.4861	-0.00062257	418.92234168939797	45.388	0.4534	45.388	45.183	45.636	0					17	8	3	0	0	0	0.99625	1	15920	15920		0.40827	0	1	2144800	+		34732	27868	25429	25604	33796	33796					0.13286815253582063
LTQDGKVFTF	10	Unmodified	_LTQDGKVFTF_					0	0	0		ENST00000506714.5_1_4:89300148-89319290:+|nuORF;nc|ENSG00000138642|Q8IVU3-3|HERC6;nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6	ENST00000506714.5_1_4:89300148-89319290:+|nuORF	ENST00000506714.5_1_4:89300148-89319290:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	386.2728271484375	3	385.873001	1154.59717	0.26486	0.0001022	-0.78925	-0.00030455	-0.52439	-0.00020235	385.8727290279129	43.763	0.45685	43.763	43.502	43.959	0					15	8	2	0	0	0	0.71564	1	15240	15240		2.8433	0.59056	1	3055800			34733	5015	25430	25605	33797	33797					0.02605994786199517
LTQFKRRKRLY	11	Unmodified	_LTQFKRRKRLY_					0	0	0			REV__CCDC27|p.S206F|1|0.44|ENSG00000162592|chr1:3756796-3756796|C/T|missense_variant	REV__CCDC27|p.S206F|1|0.44|ENSG00000162592|chr1:3756796-3756796|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	755.1431274414062	2	754.962252	1507.90995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.78	1	129.02	128.52	129.52	0.23946								0	0	0	0.16351	1	50590	50590		1.3295	0.13619	1		+		34734	15594	25431	25606	33798	33798					0.17631162970519654
LTQGEDQYY	9	Unmodified	_LTQGEDQYY_					0	0	0		nc|ENSG00000120885|P10909-3|CLU;nc|ENSG00000120885|P10909-4|CLU;ENST00000522299.5_1_8:27457218-27472184:-|nuORF;nc|ENSG00000120885|P10909-6|CLU;ENSG00000120885|ENST00000316403|CLU;nc|ENSG00000120885|P10909-5|CLU;nc|ENSG00000120885|P10909-2|CLU	nc|ENSG00000120885|P10909-3|CLU	nc|ENSG00000120885|P10909-3|CLU	MULTI-MSMS	A375_MHC_IP_R1	1	559.1463623046875	2	558.745836	1115.47712	-0.6575	-0.00036738	1.7535	0.00097978	1.096	0.0006124	558.7465691290969	94.619	0.56107	94.619	94.191	94.752	0					16	10	2	0	0	0	0.46465	1	34770	34770		21.537	1.0834	1	1637800			34735	3693	25432	25607	33799	33799					-0.07600038278246757
LTQGETLRKLY	11	Unmodified	_LTQGETLRKLY_					0	0	0		nc|ENSG00000116133|Q15392-2|DHCR24;ENSG00000116133|ENST00000371269|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	MULTI-SECPEP	A375_MHC_IP_R2	2	661.7765502929688	2	661.377352	1320.74015	-0.97875	-0.00064732	0.42348	0.00028008	-0.55527	-0.00036724	661.8791548051012	55.308	0.4062	56.059	55.881	56.287	0.75075					14	7	2	0	0	0	0.80621	1	20920	20920		24.991	0	1	2922300			34736	3373	25433	25608	33800	33800					0.0926100217743624
LTQGVPWEY	9	Unmodified	_LTQGVPWEY_					0	0	0		USP29|p.P324S|1|0.19|ENSG00000131864|chr19:57129645-57129645|C/T|missense_variant;ENSG00000131864|ENST00000254181|USP29	USP29|p.P324S|1|0.19|ENSG00000131864|chr19:57129645-57129645|C/T|missense_variant	USP29|p.P324S|1|0.19|ENSG00000131864|chr19:57129645-57129645|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	546.9690551757812	2	546.771657	1091.52876	-0.24942	-0.00013638	-0.89682	-0.00049035	-1.1462	-0.00062673	546.7712971034096	21.732	0.55871	21.732	21.454	22.013	0					16	10	2	0	0	0	0.60917	1	5774	5774		25.399	1.3787	1	931320			34737	4353	25434	25609	33801	33801					-0.013342497936719155
LTQHDSASV	9	Unmodified	_LTQHDSASV_					0	0	0		ENST00000519655.6_1_8:90624043-90640412:-|nuORF	ENST00000519655.6_1_8:90624043-90640412:-|nuORF	ENST00000519655.6_1_8:90624043-90640412:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	478.681884765625	2	479.235439	956.456324	-0.55148	-0.00026429	1.4193	0.00068018	0.86782	0.00041589	479.23614439054643	76.758	0.30334	77.498	77.352	77.655	0.74052					8	5	2	0	0	0	0.78348	1	29096	29096		1.8442	1.4435	1	484000			34738	12982	25435	25610	33802	33802					-0.02364583867233705
LTQHDSASV	9	Unmodified	_LTQHDSASV_					0	0	0		ENST00000519655.6_1_8:90624043-90640412:-|nuORF	ENST00000519655.6_1_8:90624043-90640412:-|nuORF	ENST00000519655.6_1_8:90624043-90640412:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	479.235439	956.456324	-0.42726	-0.00020476	1.8326	0.00087827	1.4054	0.00067351	479.23596613846155	77.544	0.35423	77.544	77.336	77.69	0	0.022689	0.00027441	NaN	1.8442	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	509250			34739	12982	25435	25610							-0.02364583867233705
LTQKTFAYT	9	Unmodified	_LTQKTFAYT_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-SECPEP	A375_MHC_IP_R1	1	537.170654296875	2	536.787307	1071.56006	-0.84301	-0.00045251	-4.176	-0.0022416	-5.019	-0.0026941	537.286624673079	65.775	0.25459	65.775	65.666	65.921	0					6	4	2	0	0	0	0.62767	1	23819	23819		11.64	3.7301	1	1895100			34740	2187	25436	25611	33803	33803					0.027143232404114315
LTQLQVHLL	9	Unmodified	_LTQLQVHLL_					0	0	0			REV__ENST00000341744.7_2_20:56227391-56284786:-|nuORF	REV__ENST00000341744.7_2_20:56227391-56284786:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1846313476562	2	532.826766	1063.63898	-0.54944	-0.00029276	-0.053017	-2.8249E-05	-0.60246	-0.00032101	532.8266718351119	55.966	0.45461	55.966	55.79	56.244	0					13	8	2	0	0	0	0.67483	1	20049	20049		14.838	0	1	2521800	+		34741	23735	25437	25612	33804	33804					0.1097059526537123
LTQLSEAKR	9	Unmodified	_LTQLSEAKR_					0	0	0		nc|ENSG00000067208|O60447|EVI5;nc|ENSG00000067208|O60447-2|EVI5;ENSG00000067208|ENST00000684568|EVI5;ENST00000492513.5_1_1:93073119-93091404:-|nuORF	nc|ENSG00000067208|O60447|EVI5	nc|ENSG00000067208|O60447|EVI5	MULTI-SECPEP	A375_MHC_IP_R2	2	522.6957397460938	2	523.303655	1044.59276	-0.51524	-0.00026963	-0.10059	-5.2641E-05	-0.61583	-0.00032227	523.3034426845016	126.51	0.65633	126.81	126.43	127.09	0.2951					33	12	3	0	0	0	0.77396	1	49365	49365		10.074	0	1	39976000			34742	1432	25438	25613	33805	33805					0.07224530363282611
LTQLSFLCLD	10	Unmodified	_LTQLSFLCLD_					0	0	0		ENST00000476549.6_2_6:26405834-26406223:+|nuORF	ENST00000476549.6_2_6:26405834-26406223:+|nuORF	ENST00000476549.6_2_6:26405834-26406223:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	384.3045959472656	3	384.870492	1151.58965	-0.13496	-5.194E-05	-0.17879	-6.8812E-05	-0.31375	-0.00012075	384.87037631327195	32.198	0.7611	32.935	32.401	33.162	0.73692					27	14	2	0	0	0	0.91909	1	11370	11370		5.4027	0	1	11001000			34743	12433	25439	25614	33806	33806					0.0199151919423457
LTQNQSKQI	9	Unmodified	_LTQNQSKQI_					0	0	0		ENST00000409330.5_2_8:90967775-90970983:-|nuORF	ENST00000409330.5_2_8:90967775-90970983:-|nuORF	ENST00000409330.5_2_8:90967775-90970983:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	530.6919555664062	2	530.293288	1058.57202	-0.5691	-0.00030179	-0.064045	-3.3963E-05	-0.63314	-0.00033575	530.2929856567305	125.74	2.0721	126.04	125.67	127.74	0.2951					68	40	2	0	0	0	0.63811	1	49113	49113		12.532	12.532	1	10293000			34744	11631	25440	25615	33807	33807					0.04507939983614051
LTQNQSKQI	9	Unmodified	_LTQNQSKQI_					0	0	0		ENST00000409330.5_2_8:90967775-90970983:-|nuORF	ENST00000409330.5_2_8:90967775-90970983:-|nuORF	ENST00000409330.5_2_8:90967775-90970983:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	530.293288	1058.57202	-0.5691	-0.00030179	-0.064045	-3.3963E-05	-0.63314	-0.00033575	530.2929856567305	125.74	2.0721	126.04	125.67	127.74	0.2951	-0.089399	0.00013375	NaN	12.532	68	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10293000			34745	11631	25440	25615							0.04507939983614051
LTQNWDLSK	9	Unmodified	_LTQNWDLSK_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant;nc|ENSG00000066279|Q8IZT6-2|ASPM;ASPM|p.V2172Sfs*9|1|0.47|ENSG00000066279|chr1:197102741-197102741|A/-|frameshift_variant;ASPM|p.L1368*|1|0.77|ENSG00000066279|chr1:197105149-197105149|G/-|frameshift_variant	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	A375_MHC_IP_R1	1	369.6026306152344	3	368.860984	1103.56112	0.21832	8.0528E-05	0.48526	0.00017899	0.70358	0.00025952	368.86091748799544	23.235	1.3693	23.235	22.368	23.737	0					80	26	5	0	0	0	0.69507	1	6196	6196		3.5871	0.26742	1	22941000			34746	1407	25441	25616	33808	33808					0.013485376093285595
LTQQAECFD	9	Unmodified	_LTQQAECFD_					0	0	0			REV__ENSG00000130589|ENST00000467148|HELZ2	REV__ENSG00000130589|ENST00000467148|HELZ2	MULTI-MSMS	A375_MHC_IP_R1	1	527.7186279296875	2	527.729132	1053.44371	-0.50274	-0.00026531	0.21203	0.00011189	-0.29071	-0.00015342	527.7292173672507	60.006	0.76313	60.006	59.803	60.566	0					21	14	2	0	0	0	0.4867	3	21566	21566;21588;21608		20.454	7.9221	1	1223900	+		34747	18549	25442	25617	33809;33810;33811	33809					-0.08087363321783414
LTQQAECFD	9	Unmodified	_LTQQAECFD_					0	0	0			REV__ENSG00000130589|ENST00000467148|HELZ2	REV__ENSG00000130589|ENST00000467148|HELZ2	MULTI-MSMS	A375_MHC_IP_R2	2	527.6689453125	2	527.729132	1053.44371	-0.88762	-0.00046842	-0.73565	-0.00038823	-1.6233	-0.00085665	527.7288000120004	59.422	0.80854	60.169	59.845	60.653	0.74714					23	15	2	0	0	0	0.35581	2	22383	22383;22590		26.884	8.7487	1	1487900	+		34748	18549	25442	25617	33812;33813	33812					-0.08087363321783414
LTQSRHQKHGE	11	Unmodified	_LTQSRHQKHGE_					0	0	0			REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	MULTI-MSMS	A375_MHC_IP_R1	1	440.962890625	3	440.897092	1319.66945	0.041606	1.8344E-05	0.25503	0.00011244	0.29664	0.00013079	440.89728151378125	20.65	0.86476	20.65	20.334	21.199	0					20	16	2	0	0	0	0.73658	1	5333	5333		2.6312	0	1	825650	+		34749	18896	25443	25618	33814	33814					0.02239721912474124
LTQSSMYSLPN	11	Unmodified	_LTQSSMYSLPN_					0	0	0		ENSG00000134779|ENST00000334295|TPGS2;nc|ENSG00000134779|Q68CL5-3|TPGS2;nc|ENSG00000134779|Q68CL5-5|TPGS2	ENSG00000134779|ENST00000334295|TPGS2;nc|ENSG00000134779|Q68CL5-5|TPGS2	ENSG00000134779|ENST00000334295|TPGS2	MULTI-SECPEP	A375_MHC_IP_R1	1	414.6263732910156	3	414.200789	1239.58054	0.18186	7.5327E-05	0.22172	9.1836E-05	0.40358	0.00016716	414.20078419387914	24.351	1.4682	24.351	23.838	25.306	0					36	28	2	0	0	0	0.99331	1	6883	6883		2.4348	1.325	1	2439800			34750	4608;14612	25444	25619	33815	33815					-0.029668741620525907
LTQTDFSNWH	10	Unmodified	_LTQTDFSNWH_					0	0	0			REV__ENSG00000188211|ENST00000338965|NCR3LG1	REV__ENSG00000188211|ENST00000338965|NCR3LG1	MULTI-MSMS	A375_MHC_IP_R2	2	625.1978149414062	2	624.785827	1247.5571	-0.85259	-0.00053268	-2.2844	-0.0014272	-3.1369	-0.0019599	625.2875186349378	74.823	0.35587	75.561	75.365	75.721	0.73752					12	6	3	0	0	0	0.70179	1	28419	28419		11.495	0	1	1733000	+		34751	22077	25445	25620	33816	33816					-0.05677551884377863
LTQYDLSEF	9	Unmodified	_LTQYDLSEF_					0	0	0		ENSG00000269058|ENST00000269881|CALR3	ENSG00000269058|ENST00000269881|CALR3	ENSG00000269058|ENST00000269881|CALR3	MSMS	A375_MHC_IP_R1	1	558.1817626953125	2	558.266404	1114.51826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.28	1	89.28	88.78	89.78	0								0	0	0	0.15486	1	32794	32794		12.532	2.4576	1				34752	9976	25446	25621	33817	33817					-0.03442277238764291
LTQYDLSEF	9	Unmodified	_LTQYDLSEF_					0	0	0		ENSG00000269058|ENST00000269881|CALR3	ENSG00000269058|ENST00000269881|CALR3	ENSG00000269058|ENST00000269881|CALR3	MSMS	A375_MHC_IP_R1	1	558.1817016601562	2	558.266404	1114.51826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.314	1	89.314	88.814	89.814	0								0	0	0	0.15486	1	32807	32807		12.532	0	1				34753	9976	25446	25621	33818	33818					-0.03442277238764291
LTRDKATFQL	10	Unmodified	_LTRDKATFQL_					0	0	0			REV__ENST00000568604.5_1_15:31235080-31253097:-|nuORF	REV__ENST00000568604.5_1_15:31235080-31253097:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	398.6275634765625	3	398.227667	1191.66117	-0.4917	-0.00019581	0.24808	9.8792E-05	-0.24362	-9.7017E-05	398.2278913941582	26.676	0.50445	26.676	26.423	26.928	0					19	9	3	0	0	0	0.57132	1	8008	8008		23.016	0	1	2656200	+		34754	20716	25447	25622	33819	33819					0.073007749431099
LTRDKATFQL	10	Unmodified	_LTRDKATFQL_					0	0	0			REV__ENST00000568604.5_1_15:31235080-31253097:-|nuORF	REV__ENST00000568604.5_1_15:31235080-31253097:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	398.227667	1191.66117	-0.4917	-0.00019581	0.24808	9.8792E-05	-0.24362	-9.7017E-05	398.2278913941582	26.676	0.50445	26.676	26.423	26.928	0	0.039314	5.557E-05	NaN	23.016	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2656200	+		34755	20716	25447	25622							0.073007749431099
LTRDKATFQL	10	Unmodified	_LTRDKATFQL_					0	0	0			REV__ENST00000568604.5_1_15:31235080-31253097:-|nuORF	REV__ENST00000568604.5_1_15:31235080-31253097:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	398.227667	1191.66117	-0.52414	-0.00020873	0.063838	2.5422E-05	-0.46031	-0.00018331	398.2278622428282	25.938	0.50892	26.598	26.296	26.805	0.65992	-0.039314	-0.00016454	NaN	23.016	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2692200	+		34756	20716	25447	25622							0.073007749431099
LTREDLEKF	9	Unmodified	_LTREDLEKF_					0	0	0		nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2;ENST00000486955.2_1_10:126686512-126691658:-|nuORF;ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1	nc|ENSG00000175029|P56545|CTBP2	nc|ENSG00000175029|P56545|CTBP2	MULTI-MSMS	A375_MHC_IP_R1	1	384.60833740234375	3	384.208273	1149.60299	0.32547	0.00012505	-0.088985	-3.4189E-05	0.23648	9.0858E-05	384.20822216365735	46.194	0.96052	46.194	45.839	46.799	0					41	18	5	0	0	0	0.11176	1	16151	16151		48.561	21.472	1	9971200			34757	7924	25448	25623	33820	33820					0.03417093297844076
LTREDLEKF	9	Unmodified	_LTREDLEKF_					0	0	0		nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2;ENST00000486955.2_1_10:126686512-126691658:-|nuORF;ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1	nc|ENSG00000175029|P56545|CTBP2	nc|ENSG00000175029|P56545|CTBP2	MULTI-SECPEP	A375_MHC_IP_R2	2	384.608154296875	3	384.208273	1149.60299	-0.15438	-5.9314E-05	0.27715	0.00010648	0.12277	4.7168E-05	384.2083772561331	45.372	0.75644	46.138	45.846	46.603	0.76519					40	14	4	0	0	0	0.40495	1	16932	16932		25.997	10.259	1	12730000			34758	7924	25448	25623	33821	33821					0.03417093297844076
LTREEITET	9	Unmodified	_LTREEITET_					0	0	0		ENST00000466346.1_1_11:1973436-1974044:+|nuORF	ENST00000466346.1_1_11:1973436-1974044:+|nuORF	ENST00000466346.1_1_11:1973436-1974044:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	364.9233703613281	3	364.524149	1090.55062	-0.2299	-8.3803E-05	-1.0437	-0.00038045	-1.2736	-0.00046425	364.5236894196705	35.395	2.6397	36.158	34.814	37.454	0.76338					82	51	2	0	0	0	0.53367	1	12315	12315		12.873	2.722	1	10480000			34759	12259	25449	25624	33822	33822					0.008965101642388618
LTREKLRL	8	Unmodified	_LTREKLRL_					0	0	0			REV__ENST00000554270.5_1_14:88936247-89016761:-|nuORF	REV__ENST00000554270.5_1_14:88936247-89016761:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	514.6707153320312	2	514.832383	1027.65021	-0.41522	-0.00021377	-0.14544	-7.4878E-05	-0.56066	-0.00028865	514.8323551376616	62.356	0.51218	62.356	62.148	62.66	0					14	9	2	0	0	0	0.972	1	22469	22469		7.2892	2.5332	1	2047200	+		34760	16580	25450	25625	33823	33823					0.13749417359508698
LTRGILHQDKN	11	Unmodified	_LTRGILHQDKN_					0	0	0		nc|ENSG00000165526|Q96CM3-2|RPUSD4;ENSG00000165526|ENST00000298317|RPUSD4	nc|ENSG00000165526|Q96CM3-2|RPUSD4	nc|ENSG00000165526|Q96CM3-2|RPUSD4	MULTI-SECPEP	A375_MHC_IP_R2	2	648.25048828125	2	647.864943	1293.71533	-0.64987	-0.00042103	-1.4907	-0.00096575	-2.1405	-0.0013868	647.8646821855108	126.71	0.55716	126.97	126.75	127.31	0.26592					15	10	2	0	0	0	0.98673	1	49545	49545		10.151	1.4052	1	3815700			34761	6965	25451	25626	33824	33824					0.08022367094713445
LTRHEHSY	8	Unmodified	_LTRHEHSY_					0	0	0		ENST00000494390.5_1_7:137137567-137137789:-|nuORF	ENST00000494390.5_1_7:137137567-137137789:-|nuORF	ENST00000494390.5_1_7:137137567-137137789:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	522.2338256835938	2	521.756872	1041.49919	-0.68494	-0.00035737	-1.3263	-0.000692	-2.0112	-0.0010494	521.7565835878561	41.63	0.5098	42.405	42.149	42.659	0.77451					23	9	3	0	0	0	0.62444	2	15477	15429;15477		43.858	7.3521	1	5685300			34762	12692	25452	25627	33825;33826	33826					-0.01989769019155574
LTRHQSRVW	9	Unmodified	_LTRHQSRVW_					0	0	0			REV__ENST00000265052.9_1_3:127408587-127408710:-|nuORF	REV__ENST00000265052.9_1_3:127408587-127408710:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	394.62799072265625	3	394.887868	1181.64177	-0.13521	-5.3394E-05	0.17682	6.9825E-05	0.04161	1.6431E-05	394.8877372482606	27.271	0.65405	27.271	26.828	27.482	0					30	12	3	0	0	0	0.77948	1	8297	8297		0.69767	0.69767	1	6031600	+		34763	23244	25453	25628	33827	33827					0.05821863442884023
LTRIFVVNN	9	Unmodified	_LTRIFVVNN_					0	0	0			REV__ENST00000569768.1_1_16:20750201-20753061:-|nuORF	REV__ENST00000569768.1_1_16:20750201-20753061:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	358.9779357910156	3	359.213469	1074.61858	0.085459	3.0698E-05	0.13634	4.8976E-05	0.2218	7.9674E-05	359.2135342241385	40.216	1.5218	40.216	39.744	41.266	0					43	29	2	0	0	0	0.59614	1	14049	14049		22.658	12.508	1	1541900	+		34764	16521	25454	25629	33828	33828					0.0842542460554796
LTRIRTVSY	9	Unmodified	_LTRIRTVSY_					0	0	0		ENSG00000257138|ENST00000547270|TAS2R38	ENSG00000257138|ENST00000547270|TAS2R38	ENSG00000257138|ENST00000547270|TAS2R38	MSMS	A375_MHC_IP_R2	2	370.2726135253906	3	370.220624	1107.64004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.879	1	25.523	25.023	26.023	0.64368								0	0	0	0.15486	1	8247	8247		10.151	3.5202	1				34765	9905	25455	25630	33829	33829					0.09052809634272307
LTRISDPEKW	10	Unmodified	_LTRISDPEKW_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-MSMS	A375_MHC_IP_R1	1	415.9593811035156	3	415.559305	1243.65609	0.27622	0.00011479	-0.28715	-0.00011933	-0.010929	-4.5417E-06	415.55920042912464	43.884	0.45839	43.884	43.706	44.165	0					14	8	2	0	0	0	0.16588	1	15310	15310		52.735	30.626	1	5004900			34766	1441	25456	25631	33830	33830					0.044004710804983915
LTRISDPEKW	10	Unmodified	_LTRISDPEKW_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-MSMS	A375_MHC_IP_R2	2	415.9591979980469	3	415.559305	1243.65609	0.096937	4.0283E-05	-0.38732	-0.00016095	-0.29038	-0.00012067	415.5591050988962	43.205	0.70873	43.977	43.523	44.231	0.7724					29	13	3	0	0	0	0.13408	1	16068	16068		56.328	38.756	1	4469100			34767	1441	25456	25631	33831	33831					0.044004710804983915
LTRIWSRK	8	Unmodified	_LTRIWSRK_					0	0	0			REV__ENST00000599056.5_1_19:53594910-53606571:-|nuORF	REV__ENST00000599056.5_1_19:53594910-53606571:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	353.58544921875	3	353.885576	1058.6349	-0.14833	-5.2493E-05	-1.6164	-0.00057204	-1.7648	-0.00062453	353.884932314656	32.117	0.25754	32.117	31.973	32.231	0					7	4	2	0	0	0	0.96184	1	10373	10373		8.7454	5.4641	1	1100400	+		34768	26491	25457	25632	33832	33832					0.10792550562314318
LTRKEPVLK	9	Unmodified	_LTRKEPVLK_					0	0	0			REV__ENSG00000108773|ENST00000225916|KAT2A	REV__ENSG00000108773|ENST00000225916|KAT2A	MULTI-SECPEP	A375_MHC_IP_R2	2	362.3007507324219	3	361.901003	1082.68118	-0.55304	-0.00020014	0.014186	5.1338E-06	-0.53885	-0.00019501	361.90094992876425	26.475	0.76109	27.135	26.653	27.414	0.65992					35	14	3	0	0	0	0.51395	1	8860	8860		23.801	0	1	12181000	+		34769	17552	25458	25633	33833	33833					0.143145706737414
LTRKVEDLW	9	Unmodified	_LTRKVEDLW_					0	0	0			REV__nc|ENSG00000126012|P41229-5|KDM5C	REV__nc|ENSG00000126012|P41229-5|KDM5C	MULTI-MSMS	A375_MHC_IP_R1	1	580.727294921875	2	580.327131	1158.63971	-0.033566	-1.9479E-05	-0.65985	-0.00038293	-0.69342	-0.00040241	580.3270162410834	78.53	0.45541	78.53	78.352	78.807	0					10	8	2	0	0	0	0.63811	1	28690	28690		12.532	6.7711	1	1978100	+		34770	27206	25459	25634	33834	33834					0.0667338991440829
LTRKVEDLW	9	Unmodified	_LTRKVEDLW_					0	0	0			REV__nc|ENSG00000126012|P41229-5|KDM5C	REV__nc|ENSG00000126012|P41229-5|KDM5C	MULTI-SECPEP	A375_MHC_IP_R1	1	579.6735229492188	2	580.327131	1158.63971	-0.033566	-1.9479E-05	-0.65985	-0.00038293	-0.69342	-0.00040241	580.3270162410834	78.53	0.45541	78.53	78.352	78.807	0					10	8	2	0	0	0	0.78348	1	28643	28643		4.3292	1.7518	1	1978100	+		34771	27206	25459	25634	33835	33835					0.0667338991440829
LTRKVEDLW	9	Unmodified	_LTRKVEDLW_					0	0	0			REV__nc|ENSG00000126012|P41229-5|KDM5C	REV__nc|ENSG00000126012|P41229-5|KDM5C	MULTI-SECPEP	A375_MHC_IP_R2	2	580.659912109375	2	580.327131	1158.63971	-0.2977	-0.00017276	-0.64659	-0.00037524	-0.9443	-0.000548	580.3267686868327	77.498	0.76614	78.241	78.01	78.776	0.74293					20	14	2	0	0	0	0.73363	1	29431	29431		15.847	9.124	1	1206200	+		34772	27206	25459	25634	33836	33836					0.0667338991440829
LTRKYYFNNPE	11	Unmodified	_LTRKYYFNNPE_					0	0	0		nc|ENSG00000125037|Q9P0I2-2|EMC3;ENSG00000125037|ENST00000245046|EMC3;ENST00000487465.5_1_3:10011273-10028351:-|nuORF	nc|ENSG00000125037|Q9P0I2-2|EMC3	nc|ENSG00000125037|Q9P0I2-2|EMC3	MULTI-MSMS	A375_MHC_IP_R2	2	482.67864990234375	3	482.245498	1443.71466	-0.54424	-0.00026246	-1.6266	-0.00078444	-2.1709	-0.0010469	482.5796167187526	73.747	0.25689	74.482	74.294	74.551	0.73541					5	4	2	0	0	0	0.73472	1	27945	27945		4.4062	0	1	1199800			34773	3939	25460	25635	33837	33837					0.010555276550121562
LTRLKKAQR	9	Unmodified	_LTRLKKAQR_					0	0	0		ENSG00000178395|ENST00000366875|CCDC185	ENSG00000178395|ENST00000366875|CCDC185	ENSG00000178395|ENST00000366875|CCDC185	MULTI-SECPEP	A375_MHC_IP_R2	2	371.5743103027344	3	371.912013	1112.71421	0.21632	8.045E-05	-0.79233	-0.00029468	-0.57601	-0.00021423	371.91175838412215	38.992	0.40941	39.767	39.504	39.914	0.77451					10	7	2	0	0	0	0.81516	1	14381	14381		0.69767	0	1	727880			34774	8157	25461	25636	33838	33838					0.16236197516445827
LTRLPQYY	8	Unmodified	_LTRLPQYY_					0	0	0		ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	MULTI-SECPEP	A375_MHC_IP_R2	2	526.6746215820312	2	527.290017	1052.56548	-0.39142	-0.00020639	-0.63536	-0.00033502	-1.0268	-0.00054141	527.2897975827884	67.953	0.35713	68.688	68.51	68.867	0.73511					11	6	2	0	0	0	0.93416	1	25776	25776		9.3474	0	1	854740			34775	8280	25462	25637	33839	33839					0.04130046822888289
LTRLRSRLE	9	Unmodified	_LTRLRSRLE_					0	0	0			REV__nc|ENSG00000263528|Q14164-2|IKBKE	REV__nc|ENSG00000263528|Q14164-2|IKBKE	MULTI-SECPEP	A375_MHC_IP_R2	2	381.9156494140625	3	381.903406	1142.68839	-0.59641	-0.00022777	-2.1445	-0.00081899	-2.7409	-0.0010468	382.2358193165657	37.28	0.35488	38.05	37.816	38.171	0.7709					20	6	4	0	0	0	0.77576	1	13644	13644		7.9454	0	1	3553200	+		34776	22920	25463	25638	33840	33840					0.12275303274168436
LTRMPECYFY	10	Unmodified	_LTRMPECYFY_					0	0	0		ENSG00000187959|ENST00000344935|CPSF4L	ENSG00000187959|ENST00000344935|CPSF4L	ENSG00000187959|ENST00000344935|CPSF4L	MSMS	A375_MHC_IP_R2	2	661.7667236328125	2	661.799034	1321.58352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.475	1	96.225	95.725	96.725	0.75045								0	0	0	0.15332	1	36267	36267		10.074	2.1638	1				34777	8870	25464	25639	33841	33841					-0.06441322308910458
LTRMRQLEQEN	11	Unmodified	_LTRMRQLEQEN_					0	0	0		KRT32|p.V114M|2|0.4|ENSG00000108759|chr17:41466986-41466986|C/T|missense_variant	KRT32|p.V114M|2|0.4|ENSG00000108759|chr17:41466986-41466986|C/T|missense_variant	KRT32|p.V114M|2|0.4|ENSG00000108759|chr17:41466986-41466986|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	709.6989135742188	2	709.36445	1416.71435	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.3	1	106.3	105.8	106.8	0								0	0	0	0.16124	1	39022	39022		12.241	2.0901	1				34778	14235	25465	25640	33842	33842					0.022657846635183887
LTRNNDDDMI	10	Unmodified	_LTRNNDDDMI_					0	0	0			REV__ENSG00000152611|ENST00000651391|CAPSL	REV__ENSG00000152611|ENST00000651391|CAPSL	MULTI-MSMS	A375_MHC_IP_R2	2	604.1746826171875	2	603.774602	1205.53465	-0.86083	-0.00051975	0.090756	5.4796E-05	-0.77007	-0.00046495	603.7745939229884	52.368	0.75973	53.12	52.677	53.437	0.75225					28	14	3	0	0	0	0.33265	1	19721	19721		38.176	10.547	1	7849300	+		34779	19811	25466	25641	33843	33843					-0.05989519344325345
LTRNNDDDMI	10	Unmodified	_LTRNNDDDMI_					0	0	0			REV__ENSG00000152611|ENST00000651391|CAPSL	REV__ENSG00000152611|ENST00000651391|CAPSL	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	603.774602	1205.53465	-0.86083	-0.00051975	0.090756	5.4796E-05	-0.77007	-0.00046495	603.7745939229884	52.368	0.75973	53.12	52.677	53.437	0.75225	0.079338	-0.00029718	NaN	38.176	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7849300	+		34780	19811	25466	25641							-0.05989519344325345
LTRPGSSYF	9	Unmodified	_LTRPGSSYF_					0	0	0		ENST00000489277.5_1_1:28527761-28556683:-|nuORF;ENSG00000126698|ENST00000263697|DNAJC8;ENST00000488868.1_1_1:28537058-28556683:-|nuORF;ENST00000482674.5_1_1:28537058-28559509:-|nuORF	ENST00000489277.5_1_1:28527761-28556683:-|nuORF	ENST00000489277.5_1_1:28527761-28556683:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	514.6636352539062	2	514.263999	1026.51345	-0.4822	-0.00024798	-0.11244	-5.7826E-05	-0.59465	-0.00030581	514.2639385426662	47.442	0.66009	47.442	47.159	47.819	0					38	12	4	0	0	0	0.20059	1	16662	16662		59.368	21.193	1	26665000			34781	4054	25467	25642	33844	33844					0.0012488340912568674
LTRPGSSYF	9	Unmodified	_LTRPGSSYF_					0	0	0		ENST00000489277.5_1_1:28527761-28556683:-|nuORF;ENSG00000126698|ENST00000263697|DNAJC8;ENST00000488868.1_1_1:28537058-28556683:-|nuORF;ENST00000482674.5_1_1:28537058-28559509:-|nuORF	ENST00000489277.5_1_1:28527761-28556683:-|nuORF	ENST00000489277.5_1_1:28527761-28556683:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	514.2222290039062	2	514.263999	1026.51345	-0.5988	-0.00030794	-0.10011	-5.1482E-05	-0.69891	-0.00035942	514.2639071726518	46.69	0.71228	47.451	47.054	47.766	0.76128					38	13	4	0	0	0	0.062639	2	17524	17448;17524		59.368	21.193	1	16363000			34782	4054	25467	25642	33845;33846	33846					0.0012488340912568674
LTRPKVQPL	9	Unmodified	_LTRPKVQPL_					0	0	0			REV__ENST00000577781.1_1_3:186501651-186501927:-|nuORF	REV__ENST00000577781.1_1_3:186501651-186501927:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	351.30963134765625	3	351.225598	1050.65496	-0.4844	-0.00017013	1.7546	0.00061625	1.2702	0.00044612	351.2266469451542	29.986	0.2517	29.986	29.798	30.049	0					6	4	2	0	0	0	0.60917	1	9495	9495		18.373	0	1	3794100	+		34783	26323	25468	25643	33847	33847					0.13166301502269562
LTRPLLRAL	9	Unmodified	_LTRPLLRAL_					0	0	0			REV__ENST00000445317.1_1_1:2984233-2984575:-|nuORF	REV__ENST00000445317.1_1_1:2984233-2984575:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	351.9695129394531	3	351.569476	1051.6866	-0.30393	-0.00010685	0.25471	8.9549E-05	-0.049213	-1.7302E-05	351.56952346561536	27.789	0.55441	27.789	27.533	28.088	0					16	10	2	0	0	0	0.70411	1	8528	8528		6.6304	1.7334	1	2439300	+		34784	24841	25469	25644	33848	33848					0.1628229425623431
LTRPWPELRW	10	Unmodified	_LTRPWPELRW_					0	0	0		nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.R4794Afs*50|1|0.26|ENSG00000154358|chr1:228319130-228319130|C/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.C2753Afs*104|1|0.16|ENSG00000154358|chr1:228281992-228282004|TGCAGCTTTGAGT/-|frameshift_variant;OBSCN|p.V3655Wfs*18|1|0.18|ENSG00000154358|chr1:228293443-228293443|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9-3|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-SECPEP	A375_MHC_IP_R2	2	452.3188781738281	3	451.919056	1352.73534	-0.38932	-0.00017594	-0.26863	-0.0001214	-0.65795	-0.00029734	451.91906033387346	48.859	0.45992	49.617	49.434	49.894	0.75737					13	8	2	0	0	0	0.94521	1	18396	18396		4.7159	0	1	2559500			34785	14690	25470	25645	33849	33849					0.07308162825302134
LTRQDITGPY	10	Unmodified	_LTRQDITGPY_					0	0	0			REV__nc|ENSG00000100628|Q96Q27-1|ASB2	REV__nc|ENSG00000100628|Q96Q27-1|ASB2	MULTI-SECPEP	A375_MHC_IP_R1	1	582.7064208984375	2	582.306395	1162.59824	-0.055109	-3.209E-05	0.42675	0.0002485	0.37164	0.00021641	582.3066850896618	45.796	0.75889	45.796	45.284	46.043	0					19	14	2	0	0	0	0.90513	1	16071	16071		12.241	12.241	1	2917900	+		34786	17113	25471	25646	33850	33850					0.023442091550805344
LTRQEGFVL	9	Unmodified	_LTRQEGFVL_					0	0	0			REV__ENST00000520328.5_1_14:91691273-91691387:+|nuORF	REV__ENST00000520328.5_1_14:91691273-91691387:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	532.2006225585938	2	531.800749	1061.58694	-0.62654	-0.0003332	1.0775	0.00057303	0.45098	0.00023983	531.8012134322581	81.481	0.86165	81.481	80.846	81.707	0					29	16	2	0	0	0	0.58271	1	29781	29781		26.884	6.43	1	3441400	+		34787	25695	25472	25647	33851	33851					0.05861431851622001
LTRQISWV	8	Unmodified	_LTRQISWV_					0	0	0		ENST00000520849.5_1_8:89341227-89341371:+|nuORF	ENST00000520849.5_1_8:89341227-89341371:+|nuORF	ENST00000520849.5_1_8:89341227-89341371:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.35797119140625	2	501.790184	1001.56581	-0.28828	-0.00014465	0.55758	0.00027979	0.2693	0.00013513	502.29273864126884	82.823	0.55399	82.823	82.571	83.125	0					14	10	2	0	0	0	0.86263	1	30300	30300		26.884	12.045	1	600750			34788	13000	25473	25648	33852	33852					0.06509466542763676
LTRQQQEAPG	10	Unmodified	_LTRQQQEAPG_					0	0	0			REV__ENST00000561819.1_1_16:50099919-50102714:+|nuORF	REV__ENST00000561819.1_1_16:50099919-50102714:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	376.6401672363281	3	376.531638	1126.57309	0.57966	0.00021826	2.7423	0.0010326	3.322	0.0012508	376.5323625154623	21.401	0.35661	21.401	21.199	21.555	0					9	6	2	0	0	0	0.92227	1	5671	5671		5.0475	3.4552	1	903510	+		34789	26180	25474	25649	33853	33853					0.014861543525057641
LTRRAALL	8	Unmodified	_LTRRAALL_					0	0	0			REV__ENST00000427391.1_1_X:130964423-130964573:-|nuORF	REV__ENST00000427391.1_1_X:130964423-130964573:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	457.6711120605469	2	457.300719	912.586885	-0.03718	-1.7002E-05	-0.15645	-7.1545E-05	-0.19363	-8.8548E-05	457.3004869143804	42.764	0.35497	42.764	42.587	42.942	0					11	6	2	0	0	0	0.86263	1	14807	14807		20.454	0	1	2213600	+		34790	24665	25475	25650	33854	33854					0.12709476642260142
LTRRILGWD	9	Unmodified	_LTRRILGWD_					0	0	0		ENST00000252840.10_1_19:7069531-7069681:+|nuORF	ENST00000252840.10_1_19:7069531-7069681:+|nuORF	ENST00000252840.10_1_19:7069531-7069681:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	376.9450988769531	3	377.220735	1128.64038	0.39527	0.0001491	-0.14415	-5.4375E-05	0.25113	9.473E-05	377.22064774163096	57.015	0.35746	57.015	56.905	57.263	0					10	6	2	0	0	0	0.78753	1	20516	20516		2.4985	2.4985	1	1045000			34791	10212	25476	25651	33855	33855					0.0812022935413097
LTRRKRRRKK	10	Unmodified	_LTRRKRRRKK_					0	0	0		ENST00000321521.13_1_5:102544671-102544749:+|nuORF	ENST00000321521.13_1_5:102544671-102544749:+|nuORF	ENST00000321521.13_1_5:102544671-102544749:+|nuORF	MSMS	A375_MHC_IP_R1	1	699.77392578125	2	699.473652	1396.93275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.45	1	119.45	118.95	119.95	0								0	0	0	0.15631	1	44155	44155		0.35063	0.043601	1				34792	10698	25477	25652	33856	33856					0.2501622687859708
LTRRRDLVY	9	Unmodified	_LTRRRDLVY_					0	0	0			REV__nc|ENSG00000113532|Q92187-2|ST8SIA4	REV__nc|ENSG00000113532|Q92187-2|ST8SIA4	MULTI-SECPEP	A375_MHC_IP_R1	1	595.9667358398438	2	596.351471	1190.68839	-0.04423	-2.6377E-05	2.6447	0.0015772	2.6005	0.0015508	596.3524501446655	69.911	0.50555	69.911	69.579	70.085	0					12	9	2	0	0	0	0.78798	1	25312	25312		3.9444	2.6149	1	1318900	+		34793	17784	25478	25653	33857	33857					0.10067303274172446
LTRRRDLVY	9	Unmodified	_LTRRRDLVY_					0	0	0			REV__nc|ENSG00000113532|Q92187-2|ST8SIA4	REV__nc|ENSG00000113532|Q92187-2|ST8SIA4	MULTI-MATCH	A375_MHC_IP_R2	2		2	596.351471	1190.68839	-0.46305	-0.00027614	1.8908	0.0011276	1.4277	0.00085142	596.3525409334459	69.018	0.40652	69.753	69.626	70.032	0.73511	-0.078825	-0.00027448	NaN	3.9444	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1300400	+		34794	17784	25478	25653							0.10067303274172446
LTRRREQSQII	11	Unmodified	_LTRRREQSQII_					0	0	0		ENST00000505904.1_1_3:42700310-42703020:+|nuORF	ENST00000505904.1_1_3:42700310-42703020:+|nuORF	ENST00000505904.1_1_3:42700310-42703020:+|nuORF	MSMS	A375_MHC_IP_R2	2	700.329345703125	2	700.410049	1398.80554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.09	1	148.11	147.61	148.61	0.018707								0	0	0	0.16352	1	57529	57529		0.26902	0	1				34795	12846	25479	25654	33858	33858					0.12209416423138464
LTRSDWRR	8	Unmodified	_LTRSDWRR_					0	0	0			REV__ENST00000359551.6_1_8:145158926-145159115:-|nuORF	REV__ENST00000359551.6_1_8:145158926-145159115:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	545.2117919921875	2	545.299239	1088.58392	-0.71822	-0.00039165	0.49205	0.00026832	-0.22617	-0.00012333	545.2995857847493	84.156	1.4271	84.895	84.254	85.681	0.73962					55	27	3	0	0	0	0.9187	1	31793	31793		18.135	18.135	1	36643000	+		34796	23879	25480	25655	33859	33859					0.043176015174594795
LTRSEDLM	8	Unmodified	_LTRSEDLM_					0	0	0			REV__CON__Q3KUS7	REV__CON__Q3KUS7	MULTI-SECPEP	A375_MHC_IP_R2	2	483.1762390136719	2	482.742042	963.469531	-0.65714	-0.00031723	0.63392	0.00030602	-0.023225	-1.1212E-05	482.74224709592903	106.86	0.5578	107.62	107.44	108	0.75977					14	10	2	0	0	0	0.90057	1	40352	40352		29.082	9.6426	1	1033900	+	+	34797	15884	25481	25656	33860	33860					-0.013664690795053502
LTRSLAFSVR	10	Unmodified	_LTRSLAFSVR_					0	0	0		ENST00000356641.7_2_11:120207720-120207762:+|nuORF	ENST00000356641.7_2_11:120207720-120207762:+|nuORF	ENST00000356641.7_2_11:120207720-120207762:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	384.28643798828125	3	383.89614	1148.66659	0.27982	0.00010742	0.075659	2.9045E-05	0.35548	0.00013647	383.89621478767253	34.076	1.52	34.076	33.698	35.218	0					75	29	5	0	0	0	0.70174	1	11427	11427		11.518	3.0736	1	239410000			34798	10969	25482	25657	33861	33861					0.09820498525618859
LTRSLKRLL	9	Unmodified	_LTRSLKRLL_					0	0	0		ENSG00000169933|ENST00000675598|FRMPD4	ENSG00000169933|ENST00000675598|FRMPD4	ENSG00000169933|ENST00000675598|FRMPD4	MULTI-MSMS	A375_MHC_IP_R1	1	367.64862060546875	3	367.248514	1098.72371	0.15333	5.6311E-05	0.103	3.7826E-05	0.25633	9.4138E-05	367.2484915861973	40.095	0.5102	40.095	39.794	40.304	0					12	8	2	0	0	0	0.58268	2	13782	13710;13782		15.739	2.866	1	2237500			34799	7454	25483	25658	33862;33863	33863					0.17829965802002334
LTRSTLAPTGK	11	Unmodified	_LTRSTLAPTGK_					0	0	0		ENST00000374823.9_1_10:33515081-33515138:-|nuORF	ENST00000374823.9_1_10:33515081-33515138:-|nuORF	ENST00000374823.9_1_10:33515081-33515138:-|nuORF	MSMS	A375_MHC_IP_R2	2	382.2851867675781	3	382.227667	1143.66117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.18	1	19.783	19.283	20.283	0.60308								0	0	0	0.15674	1	5865	5865		16.275	5.3756	1				34800	11260	25484	25659	33864	33864					0.09508774943151366
LTRSTLCSM	9	Unmodified	_LTRSTLCSM_					0	0	0			REV__nc|ENSG00000137474|Q13402-4|MYO7A;REV__nc|ENSG00000137474|Q13402-8|MYO7A	REV__nc|ENSG00000137474|Q13402-8|MYO7A	MULTI-MSMS	A375_MHC_IP_R1	1	506.1846923828125	2	506.25172	1010.48889	-0.28555	-0.00014456	2.9672	0.0015022	2.6817	0.0013576	506.25237658669664	44.101	0.30806	44.101	43.959	44.267	0					8	5	2	0	0	0	0.60101	1	15395	15395		14.838	0.93222	1	1330000	+		34801	27248;19009	25485	25660	33865	33865					-0.015938360602376633
LTRSTLCSM	9	Unmodified	_LTRSTLCSM_					0	0	0			REV__nc|ENSG00000137474|Q13402-4|MYO7A;REV__nc|ENSG00000137474|Q13402-8|MYO7A	REV__nc|ENSG00000137474|Q13402-8|MYO7A	MSMS	A375_MHC_IP_R2	2	506.185302734375	2	506.25172	1010.48889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.507	1	44.279	43.779	44.779	0.7724								0	0	0	0.15069	1	16211	16211		20.454	4.6064	1		+		34802	27248;19009	25485	25660	33866	33866					-0.015938360602376633
LTRSTLCSM	9	Unmodified	_LTRSTLCSM_					0	0	0			REV__nc|ENSG00000137474|Q13402-4|MYO7A;REV__nc|ENSG00000137474|Q13402-8|MYO7A	REV__nc|ENSG00000137474|Q13402-8|MYO7A	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	506.25172	1010.48889	-0.28555	-0.00014456	2.9672	0.0015022	2.6817	0.0013576	506.25237658669664	44.101	0.30806	44.101	43.959	44.267	0	0	0	NaN	14.838	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1330000	+		34803	27248;19009	25485	25660							-0.015938360602376633
LTRTAHVIAL	10	Unmodified	_LTRTAHVIAL_					0	0	0			REV__ENST00000439871.1_1_2:218925303-218925771:-|nuORF	REV__ENST00000439871.1_1_2:218925303-218925771:-|nuORF	MSMS	A375_MHC_IP_R1	1	365.60491943359375	3	365.560869	1093.66078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.637	1	33.637	33.137	34.137	0								0	0	0	0.15191	1	11004	11004		14.218	4.6742	1		+		34804	20365	25486	25661	33867	33867					0.1176940001391813
LTRVAHRLV	9	Unmodified	_LTRVAHRLV_					0	0	0			REV__nc|ENSG00000214290|A8K830-3|POU2AF3	REV__nc|ENSG00000214290|A8K830-3|POU2AF3	MSMS	A375_MHC_IP_R1	1	355.4599914550781	3	355.561092	1063.66145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.377	1	37.377	36.877	37.877	0								0	0	0	0.15486	1	12596	12596		6.6304	0.43853	1		+		34805	27491	25487	25662	33868	33868					0.1321623945364081
LTRVAKQP	8	Unmodified	_LTRVAKQP_					0	0	0			REV__ENSG00000113749|ENST00000636584|HRH2	REV__ENSG00000113749|ENST00000636584|HRH2	MULTI-SECPEP	A375_MHC_IP_R1	1	457.1846008300781	2	456.784902	911.55525	-0.26608	-0.00012154	-0.21946	-0.00010024	-0.48554	-0.00022179	456.78476323825953	55.092	0.30364	55.092	54.975	55.279	0					8	5	2	0	0	0	0.94479	1	19724	19724		8.5933	1.304	1	1765300	+		34806	17802	25488	25663	33869	33869					0.09593483888318133
LTRVEVTEF	9	Unmodified	_LTRVEVTEF_					0	0	0		nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;SET|p.D163*|1|0.21|ENSG00000119335|chr9:128692935-128692936|-/T|frameshift_variant	nc|ENSG00000119335|Q01105-3|SET	nc|ENSG00000119335|Q01105-3|SET	MULTI-SECPEP	A375_MHC_IP_R1	1	547.1693725585938	2	547.298039	1092.58152	-0.47176	-0.00025819	-0.15537	-8.5035E-05	-0.62713	-0.00034323	547.297911690002	62.173	0.81776	62.173	61.585	62.403	0					21	15	2	0	0	0	0.18129	1	22291	22291		61.09	11.536	1	5047000			34807	3585	25489	25664	33870	33870					0.0389370826915183
LTRVEVTEF	9	Unmodified	_LTRVEVTEF_					0	0	0		nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;SET|p.D163*|1|0.21|ENSG00000119335|chr9:128692935-128692936|-/T|frameshift_variant	nc|ENSG00000119335|Q01105-3|SET	nc|ENSG00000119335|Q01105-3|SET	MULTI-SECPEP	A375_MHC_IP_R2	2	547.1690063476562	2	547.298039	1092.58152	-1.0891	-0.00059609	-0.021502	-1.1768E-05	-1.1106	-0.00060785	547.2980264478355	60.948	0.40457	61.693	61.464	61.869	0.74504					16	7	3	0	0	0	0.42978	1	23124	23124		38.615	0	1	5197700			34808	3585	25489	25664	33871	33871					0.0389370826915183
LTRVEVTEF	9	Unmodified	_LTRVEVTEF_					0	0	0		nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;SET|p.D163*|1|0.21|ENSG00000119335|chr9:128692935-128692936|-/T|frameshift_variant	nc|ENSG00000119335|Q01105-3|SET	nc|ENSG00000119335|Q01105-3|SET	MULTI-MATCH	A375_MHC_IP_R2	2		2	547.298039	1092.58152	-1.1034	-0.00060387	0.14149	7.7435E-05	-0.96188	-0.00052643	547.298243590478	61.343	0.45327	62.088	61.819	62.272	0.74504	-0.042348	0.00013043	NaN	53.317	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5430000			34809	3585	25489	25664							0.0389370826915183
LTRVKGLQL	9	Unmodified	_LTRVKGLQL_					0	0	0			REV__ENST00000304623.12_2_5:11904029-11904119:-|nuORF	REV__ENST00000304623.12_2_5:11904029-11904119:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	513.5361938476562	2	514.334759	1026.65496	-0.56963	-0.00029298	-0.53016	-0.00027268	-1.0998	-0.00056566	514.3346217920762	143.47	0.35046	143.5	143.29	143.64	0.024429					9	6	2	0	0	0	0.8028	1	56027	56027		0.45834	0	1	566400	+		34810	23457	25490	25665	33872	33872					0.14270301502278926
LTSATWSQPL	10	Unmodified	_LTSATWSQPL_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-SECPEP	A375_MHC_IP_R2	2	551.6513671875	2	552.290214	1102.56587	-0.76765	-0.00042396	-0.89132	-0.00049227	-1.659	-0.00091623	552.2897005693953	76.177	0.45576	76.918	76.691	77.146	0.74052					12	8	2	0	0	0	0.90513	1	28907	28907		4.897	4.897	1	1250700			34811	5536	25491	25666	33873	33873					0.018694217520987877
LTSDEYNKI	9	Unmodified	_LTSDEYNKI_					0	0	0		tr|U7SJ15|U7SJ15_FUSNUDNAhelicaseRecQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02060PE=3SV=1	tr|U7SJ15|U7SJ15_FUSNUDNAhelicaseRecQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02060PE=3SV=1	tr|U7SJ15|U7SJ15_FUSNUDNAhelicaseRecQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02060PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	362.28167724609375	3	361.516995	1081.52915	0.21297	7.6992E-05	1.0152	0.00036702	1.2282	0.00044401	361.8519145688451	28.506	0.45656	28.506	28.339	28.795	0					10	8	2	0	0	0	0.55359	1	8744	8744		7.1017	0	1	2681300			34812	29441	25492	25667	33874	33874					-0.0083487486449485
LTSEADVEAV	10	Unmodified	_LTSEADVEAV_					0	0	0		ENSG00000135537|ENST00000368977|AFG1L	ENSG00000135537|ENST00000368977|AFG1L	ENSG00000135537|ENST00000368977|AFG1L	MULTI-SECPEP	A375_MHC_IP_R1	1	517.687255859375	2	517.256037	1032.49752	-0.45395	-0.00023481	1.4642	0.00075736	1.0102	0.00052256	517.2564943371448	40.347	0.61175	40.347	40.1	40.712	0					18	11	3	0	0	0	0.8125	1	13980	13980		13.042	2.9685	1	1925400			34813	4693	25493	25668	33875	33875					-0.017428676184408687
LTSEADVEAV	10	Unmodified	_LTSEADVEAV_					0	0	0		ENSG00000135537|ENST00000368977|AFG1L	ENSG00000135537|ENST00000368977|AFG1L	ENSG00000135537|ENST00000368977|AFG1L	MULTI-MATCH	A375_MHC_IP_R2	2		2	517.256037	1032.49752	-0.77235	-0.0003995	2.0313	0.0010507	1.2589	0.00065119	518.2600736797461	39.602	0.35517	40.377	40.118	40.473	0.77451	0.01487	0.00015186	NaN	13.042	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1568600			34814	4693	25493	25668							-0.017428676184408687
LTSESSRYQF	10	Unmodified	_LTSESSRYQF_					0	0	0		ENST00000583772.1_1_17:73016361-73017097:+|nuORF;ENSG00000167862|ENST00000301585|MRPL58	ENST00000583772.1_1_17:73016361-73017097:+|nuORF	ENST00000583772.1_1_17:73016361-73017097:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	609.6932373046875	2	609.293485	1216.57242	-0.33241	-0.00020254	-0.11823	-7.204E-05	-0.45065	-0.00027458	609.2930275006636	75.574	0.90571	75.574	75.009	75.915	0					47	17	4	0	0	0	0.81532	1	27503	27503		24.991	2.2547	1	13863000			34815	7229	25494	25669	33876	33876					-0.02720685087183483
LTSESSRYQF	10	Unmodified	_LTSESSRYQF_					0	0	0		ENST00000583772.1_1_17:73016361-73017097:+|nuORF;ENSG00000167862|ENST00000301585|MRPL58	ENST00000583772.1_1_17:73016361-73017097:+|nuORF	ENST00000583772.1_1_17:73016361-73017097:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	608.6849975585938	2	609.293485	1216.57242	-0.51883	-0.00031612	0.22642	0.00013795	-0.29242	-0.00017817	609.2931799337996	74.808	1.7271	75.546	74.348	76.075	0.73751					62	33	4	0	0	0	0.27246	1	28380	28380		41.84	3.6641	1	17591000			34816	7229	25494	25669	33877	33877					-0.02720685087183483
LTSFFSFLY	9	Unmodified	_LTSFFSFLY_					0	0	0		ENSG00000139988|ENST00000551171|RDH12	ENSG00000139988|ENST00000551171|RDH12	ENSG00000139988|ENST00000551171|RDH12	MULTI-SECPEP	A375_MHC_IP_R2	2	375.95196533203125	3	375.526943	1123.559	-0.042251	-1.5866E-05	1.5742	0.00059114	1.5319	0.00057527	375.8617562888994	20.088	0.86156	20.698	20.197	21.059	0.61029					21	16	2	0	0	0	0.69504	1	6299	6299		8.1555	0	1	681880			34817	5122	25495	25670	33878	33878					0.002161088715411097
LTSHILRAF	9	Unmodified	_LTSHILRAF_					0	0	0		ENSG00000106266|ENST00000222990|SNX8;ENST00000480807.1_1_7:2294693-2297236:-|nuORF	ENSG00000106266|ENST00000222990|SNX8	ENSG00000106266|ENST00000222990|SNX8	MULTI-SECPEP	A375_MHC_IP_R1	1	353.6097412109375	3	353.209948	1056.60801	-0.067642	-2.3892E-05	-0.35937	-0.00012693	-0.42701	-0.00015083	353.2098337607547	55.371	0.40712	55.371	55.126	55.533	0					12	7	3	0	0	0	0.49205	1	19828	19828		7.9454	5.8594	1	1764300			34818	2678	25496	25671	33879	33879					0.081974419511198
LTSINKVYI	9	Unmodified	_LTSINKVYI_					0	0	0			REV__tr|U7SUZ2|U7SUZ2_FUSNUGlycogendebranchingenzymeGlgXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01446PE=4SV=1	REV__tr|U7SUZ2|U7SUZ2_FUSNUGlycogendebranchingenzymeGlgXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01446PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1951904296875	2	525.813325	1049.6121	-0.35937	-0.00018896	-0.24448	-0.00012855	-0.60385	-0.00031751	525.8132111816429	68.503	0.50665	69.238	68.968	69.474	0.73512					20	9	3	0	0	0	0.28216	1	25956	25956		34.402	0	1	2840000	+		34819	28573	25497	25672	33880	33880					0.08927486654192762
LTSITEIWQG	10	Unmodified	_LTSITEIWQG_					0	0	0		ENST00000311841.7_2_1:54618851-54661198:-|nuORF;ENST00000420054.5_1_1:54651905-54661258:-|nuORF	ENST00000311841.7_2_1:54618851-54661198:-|nuORF	ENST00000311841.7_2_1:54618851-54661198:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	383.6124572753906	3	383.20464	1146.59209	0.21424	8.2098E-05	-0.24284	-9.3059E-05	-0.028603	-1.0961E-05	383.20462709387766	40.103	0.45934	40.103	39.845	40.304	0					16	8	3	0	0	0	0.91909	1	13678	13678		5.4027	3.6604	1	2546200			34820	10632	25498	25673	33881	33881					0.024656909235773128
LTSKLCTHPQY	11	Unmodified	_LTSKLCTHPQY_					0	0	0			REV__nc|ENSG00000082126|Q96JB8-5|MPP4	REV__nc|ENSG00000082126|Q96JB8-5|MPP4	MSMS	A375_MHC_IP_R2	2	430.925537109375	3	430.888546	1289.64381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.244	1	47.009	46.509	47.509	0.76519								0	0	0	0.16213	1	17314	17314		3.8459	0	1		+		34821	16785	25499	25674	33882	33882					0.010571113458354375
LTSLRKLWLMH	11	Unmodified	_LTSLRKLWLMH_					0	0	0		ENSG00000131409|ENST00000652263|LRRC4B	ENSG00000131409|ENST00000652263|LRRC4B	ENSG00000131409|ENST00000652263|LRRC4B	MULTI-MSMS	A375_MHC_IP_R2	2	699.8076782226562	2	699.407932	1396.80131	-0.51488	-0.00036011	0.7672	0.00053659	0.25232	0.00017648	699.4082057230529	143.15	0.95804	143.18	142.74	143.69	0.030731					34	18	3	0	0	0	0.73795	1	55952	55952		1.3295	0.9789	1	1556000			34822	4327	25500	25675	33883	33883					0.11878235675862925
LTSLRLVFL	9	Unmodified	_LTSLRLVFL_					0	0	0		ENST00000589797.5_1_17:40738856-40760685:-|nuORF;ENST00000586796.1_1_17:40739748-40761384:-|nuORF;ENSG00000141699|ENST00000309428|RETREG3	ENST00000589797.5_1_17:40738856-40760685:-|nuORF	ENST00000589797.5_1_17:40738856-40760685:-|nuORF	MSMS	A375_MHC_IP_R1	1	531.7366943359375	2	531.33951	1060.66447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.84	1	110.84	110.34	111.34	0								0	0	0	0.15486	1	40638	40638		7.9102	1.5561	1				34823	5269	25501	25676	33884	33884					0.13656069787793967
LTSLRLVFL	9	Unmodified	_LTSLRLVFL_					0	0	0		ENST00000589797.5_1_17:40738856-40760685:-|nuORF;ENST00000586796.1_1_17:40739748-40761384:-|nuORF;ENSG00000141699|ENST00000309428|RETREG3	ENST00000589797.5_1_17:40738856-40760685:-|nuORF	ENST00000589797.5_1_17:40738856-40760685:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	531.7392578125	2	531.33951	1060.66447	-0.65654	-0.00034885	-0.33683	-0.00017897	-0.99337	-0.00052782	531.339740741467	74.044	0.50718	74.781	74.604	75.111	0.73752					16	9	2	0	0	0	0.61452	1	28151	28151		15.248	0	1	2098100			34824	5269	25501	25676	33885	33885					0.13656069787793967
LTSLRPQP	8	Unmodified	_LTSLRPQP_					0	0	0			REV__ENST00000575277.1_1_16:67976333-67976859:-|nuORF	REV__ENST00000575277.1_1_16:67976333-67976859:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	456.6688537597656	2	456.269084	910.523616	-0.42311	-0.00019305	-0.17783	-8.1138E-05	-0.60094	-0.00027419	456.2690538867561	40.753	0.40811	41.528	41.335	41.743	0.77451					11	7	2	0	0	0	0.84748	1	15129	15129		21.747	0	1	2701700	+		34825	26306	25502	25677	33886	33886					0.06477491134364755
LTSMLLMLVS	10	Unmodified	_LTSMLLMLVS_					0	0	0			REV__ENSG00000100263|ENST00000216085|RHBDD3	REV__ENSG00000100263|ENST00000216085|RHBDD3	MULTI-MSMS	A375_MHC_IP_R1	1	370.2767333984375	3	369.876589	1106.60794	0.50106	0.00018533	-0.41378	-0.00015305	0.087281	3.2283E-05	369.87646796081674	35.582	0.81471	35.582	35.319	36.133	0					23	15	2	0	0	0	0.63639	1	11844	11844		11.518	0.61892	1	7049200	+		34826	17065	25503	25678	33887	33887					0.05889937844608539
LTSMTWAASL	10	Unmodified	_LTSMTWAASL_					0	0	0			REV__ENST00000523401.5_1_8:67702988-67703051:+|nuORF	REV__ENST00000523401.5_1_8:67702988-67703051:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	541.2680053710938	2	540.773342	1079.53213	-0.69243	-0.00037445	-0.54155	-0.00029286	-1.234	-0.00066731	541.274312707998	86.445	0.46098	87.178	86.896	87.357	0.73301					16	8	2	0	0	0	0.36703	1	32813	32813		36.127	10.728	1	930390	+		34827	25744	25504	25679	33888	33888					-0.004453230113085738
LTSMTWAASL	10	Unmodified	_LTSMTWAASL_					0	0	0			REV__ENST00000523401.5_1_8:67702988-67703051:+|nuORF	REV__ENST00000523401.5_1_8:67702988-67703051:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	541.1911010742188	2	540.773342	1079.53213	-0.69243	-0.00037445	-0.54155	-0.00029286	-1.234	-0.00066731	541.274312707998	86.445	0.46098	87.178	86.896	87.357	0.73301					16	8	2	0	0	0	0.38158	1	32864	32864		52.268	10.429	1	930390	+		34828	25744	25504	25679	33889	33889					-0.004453230113085738
LTSNFVCAI	9	Unmodified	_LTSNFVCAI_					0	0	0			REV__ENSG00000204740|ENST00000454679|MALRD1	REV__ENSG00000204740|ENST00000454679|MALRD1	MSMS	A375_MHC_IP_R2	2	484.16558837890625	2	484.249503	966.484453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.423	1	94.166	93.666	94.666	0.74281								0	0	0	0.1521	1	35517	35517		18.135	1.1927	1		+		34829	22538	25505	25680	33890	33890					-0.0001297721150876896
LTSNPLASHDY	11	Unmodified	_LTSNPLASHDY_					0	0	0		nc|ENSG00000113719|Q969X5-2|ERGIC1;ENSG00000113719|ENST00000393784|ERGIC1	nc|ENSG00000113719|Q969X5-2|ERGIC1	nc|ENSG00000113719|Q969X5-2|ERGIC1	MULTI-SECPEP	A375_MHC_IP_R2	2	609.69287109375	2	609.293485	1216.57242	-0.72394	-0.00044109	0.92695	0.00056479	0.20301	0.00012369	609.2935489263511	49.385	0.55499	50.142	49.843	50.398	0.75737					28	10	4	0	0	0	0.86796	1	18553	18553		20.415	0	1	4251400			34830	3176	25506	25681	33891	33891					-0.027206850871607458
LTSQFEEFRG	10	Unmodified	_LTSQFEEFRG_					0	0	0			REV__ENSG00000164440|ENST00000358430|TXLNB	REV__ENSG00000164440|ENST00000358430|TXLNB	MULTI-SECPEP	A375_MHC_IP_R2	2	607.6958618164062	2	607.296027	1212.5775	-0.43658	-0.00026514	1.2628	0.00076692	0.82626	0.00050179	607.2961020742335	74.4	1.1676	75.137	74.604	75.772	0.73752					31	22	2	0	0	0	0.73104	1	28248	28248		31.268	0	1	3755900	+		34831	20494	25507	25682	33892	33892					-0.020283812245679655
LTSRDQSYQ	9	Unmodified	_LTSRDQSYQ_					0	0	0		ENSG00000067836|ENST00000322048|ROGDI	ENSG00000067836|ENST00000322048|ROGDI	ENSG00000067836|ENST00000322048|ROGDI	MSMS	A375_MHC_IP_R1	1	549.1613159179688	2	549.264727	1096.5149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.079	1	36.079	35.579	36.579	0								0	0	0	0.15142	1	12047	12047		19.257	1.1106	1				34832	1446	25508	25683	33893	33893					-0.029495272927761107
LTSRERKVKY	10	Unmodified	_LTSRERKVKY_					0	0	0		ENST00000368811.7_1_1:151955452-151955545:-|nuORF	ENST00000368811.7_1_1:151955452-151955545:-|nuORF	ENST00000368811.7_1_1:151955452-151955545:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	427.988525390625	3	427.254216	1278.74082	-0.32184	-0.00013751	-0.016283	-6.9568E-06	-0.33812	-0.00014447	427.2542105533477	24.248	0.35507	24.248	24.143	24.498	0					9	6	2	0	0	0	0.94269	1	6878	6878		3.3196	0	1	3342800			34833	11123	25509	25684	33894	33894					0.11259841617129496
LTSTGFEY	8	Unmodified	_LTSTGFEY_					0	0	0		ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2	ENSG00000134759|ENST00000358232|ELP2	ENSG00000134759|ENST00000358232|ELP2	MULTI-MSMS	A375_MHC_IP_R1	1	918.4981689453125	1	917.42509	916.417813	-0.33561	-0.0003079	0.16068	0.00014741	-0.17494	-0.00016049	917.4251729334196	66.709	0.40979	66.709	66.529	66.938	0					13	7	2	0	0	0	0.76248	1	24192	24192		16.942	7.5949	1	1482800			34834	4605	25510	25685	33895	33895					-0.04373889501755457
LTSTGFEY	8	Unmodified	_LTSTGFEY_					0	0	0		ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2	ENSG00000134759|ENST00000358232|ELP2	ENSG00000134759|ENST00000358232|ELP2	MULTI-MATCH	A375_MHC_IP_R2	2		1	917.42509	916.417813	-0.53392	-0.00048983	0.37238	0.00034163	-0.16154	-0.0001482	917.4251020895814	66.018	0.45943	66.756	66.526	66.985	0.73811	0.023596	9.3716E-05	NaN	16.942	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1715400			34835	4605	25510	25685							-0.04373889501755457
LTSVEVPGND	10	Unmodified	_LTSVEVPGND_					0	0	0			REV__ENST00000530122.1_1_20:57266543-57280604:+|nuORF	REV__ENST00000530122.1_1_20:57266543-57280604:+|nuORF	MSMS	A375_MHC_IP_R2	2	515.68994140625	2	515.756204	1029.49785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.594	1	96.344	95.844	96.844	0.75045								0	0	0	0.14925	1	36309	36309		19.257	3.4098	1		+		34836	22675	25511	25686	33896	33896					-0.01571447898572842
LTSVVTKRIP	10	Unmodified	_LTSVVTKRIP_					0	0	0			REV__ENSG00000178997|ENST00000458580|EXD1	REV__ENSG00000178997|ENST00000458580|EXD1	MULTI-MSMS	A375_MHC_IP_R2	2	372.2578125	3	371.904524	1112.69174	0.43344	0.0001612	-0.13926	-5.1793E-05	0.29417	0.0001094	371.90444731368154	32.181	0.50717	32.918	32.605	33.112	0.73691					15	9	2	0	0	0	0.70682	1	11430	11430		9.2438	0.49199	1	1866900	+		34837	21533	25512	25687	33897	33897					0.13990553328198985
LTSVVTKRIP	10	Unmodified	_LTSVVTKRIP_					0	0	0			REV__ENSG00000178997|ENST00000458580|EXD1	REV__ENSG00000178997|ENST00000458580|EXD1	MULTI-MATCH	A375_MHC_IP_R1	1		3	371.904524	1112.69174	0.19132	7.1154E-05	-0.27149	-0.00010097	-0.080168	-2.9815E-05	371.90443968923654	33.057	0.55636	33.057	32.684	33.241	0	0.069492	-9.2552E-05	NaN	9.2438	16	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1689100	+		34838	21533	25512	25687							0.13990553328198985
LTSVVTKRIP	10	Unmodified	_LTSVVTKRIP_					0	0	0			REV__ENSG00000178997|ENST00000458580|EXD1	REV__ENSG00000178997|ENST00000458580|EXD1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	371.904524	1112.69174	0.43344	0.0001612	-0.13926	-5.1793E-05	0.29417	0.0001094	371.90444731368154	32.181	0.50717	32.918	32.605	33.112	0.73691	-0.069492	5.4975E-05	NaN	9.2438	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1866900	+		34839	21533	25512	25687							0.13990553328198985
LTSYFDIMSI	10	Unmodified	_LTSYFDIMSI_					0	0	0		tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1	tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1	tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	596.2474365234375	2	595.294107	1188.57366	-0.27099	-0.00016132	-0.19289	-0.00011483	-0.46388	-0.00027615	595.2944341640474	93.322	0.96779	93.322	92.973	93.941	0					43	18	3	0	0	0	0.70329	1	34330	34330		10.824	0.75	1	8756400			34840	29672	25513	25688	33898	33898					-0.013081870426503883
LTSYHDPTY	9	Unmodified	_LTSYHDPTY_					0	0	0			REV__ENSG00000135540|ENST00000343505|NHSL1	REV__ENSG00000135540|ENST00000343505|NHSL1	MSMS	A375_MHC_IP_R1	1	548.6688842773438	2	548.750921	1095.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.391	1	32.391	31.891	32.891	0								0	0	0	0.14359	1	10461	10461		28.487	4.4663	1		+		34841	18862	25514	25689	33899	33899					-0.05663430552999671
LTSYWSLLL	9	Unmodified	_LTSYWSLLL_					0	0	0		ENST00000471841.5_1_3:179066694-179069717:+|nuORF	ENST00000471841.5_1_3:179066694-179069717:+|nuORF	ENST00000471841.5_1_3:179066694-179069717:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	548.7059936523438	2	548.307875	1094.6012	-0.56188	-0.00030808	-2.6025	-0.001427	-3.1644	-0.0017351	548.3069056154633	57.992	0.70948	57.992	57.568	58.278	0					22	13	3	0	0	0	0.20094	1	20833	20833		53.576	13.618	1	2332400			34842	12361	25515	25690	33900	33900					0.05768084279907271
LTTAGFLEQH	10	Unmodified	_LTTAGFLEQH_					0	0	0		ENST00000389793.6_1_1:235972384-235972480:-|nuORF	ENST00000389793.6_1_1:235972384-235972480:-|nuORF	ENST00000389793.6_1_1:235972384-235972480:-|nuORF	MSMS	A375_MHC_IP_R2	2	558.7056274414062	2	558.787838	1115.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.709	1	80.454	79.954	80.954	0.74474								0	0	0	0.14971	1	30252	30252		18.373	0.22675	1				34843	11403	25516	25691	33901	33901					0.007965376093352461
LTTENSGNYY	10	Unmodified	_LTTENSGNYY_					0	0	0		ENST00000481082.1_1_1:157512505-157514867:-|nuORF;nc|ENSG00000143297|Q96RD9-4|FCRL5;nc|ENSG00000143297|Q96RD9-3|FCRL5;ENSG00000143297|ENST00000361835|FCRL5	ENST00000481082.1_1_1:157512505-157514867:-|nuORF	ENST00000481082.1_1_1:157512505-157514867:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	580.6661987304688	2	581.256568	1160.49858	-0.51078	-0.00029689	-0.94534	-0.00054948	-1.4561	-0.00084638	581.2556790610153	97.193	0.86162	97.949	97.368	98.23	0.75586					20	16	2	0	0	0	0.91442	1	36803	36803		4.5289	0	1	1503200			34844	5365	25517	25692	33902	33902					-0.07524653249515723
LTTEQIEETL	10	Unmodified	_LTTEQIEETL_					0	0	0		ENSG00000182606|ENST00000327628|TRAK1	ENSG00000182606|ENST00000327628|TRAK1	ENSG00000182606|ENST00000327628|TRAK1	MULTI-SECPEP	A375_MHC_IP_R1	1	589.203857421875	2	588.803351	1175.59215	0.24108	0.00014195	-0.82726	-0.00048709	-0.58618	-0.00034514	588.8033163542395	69.453	0.40623	69.453	69.275	69.681	0					12	7	2	0	0	0	0.20175	1	25227	25227		61.602	0	1	2421500			34845	8423	25518	25693	33903	33903					0.011376461329064114
LTTEVTTMTR	10	Unmodified	_LTTEVTTMTR_					0	0	0		ENST00000452761.1_1_2:110745136-110745940:-|nuORF	ENST00000452761.1_1_2:110745136-110745940:-|nuORF	ENST00000452761.1_1_2:110745136-110745940:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	384.2863464355469	3	384.869151	1151.58562	-0.30348	-0.0001168	1.5183	0.00058436	1.2149	0.00046756	384.869800551605	28.146	0.20312	28.824	28.655	28.858	0.67857					8	3	3	0	0	0	0.87163	1	9673	9673		8.4443	2.921	1	1375400			34846	12089	25519	25694	33904	33904					0.01589429700538858
LTTFIFHY	8	Unmodified	_LTTFIFHY_					0	0	0			REV__ENSG00000163873|ENST00000373091|GRIK3	REV__ENSG00000163873|ENST00000373091|GRIK3	MULTI-SECPEP	A375_MHC_IP_R2	2	521.9667358398438	2	521.273835	1040.53312	-0.48262	-0.00025158	0.3118	0.00016253	-0.17082	-8.9044E-05	521.7764286603245	47.766	0.35587	48.527	48.326	48.682	0.76128					9	6	2	0	0	0	0.91495	1	17939	17939		7.9102	0	1	946410	+		34847	20422	25520	25695	33905	33905					0.014472594198878141
LTTGVFEGIY	10	Unmodified	_LTTGVFEGIY_					0	0	0			REV__tr|U7T5A8|U7T5A8_FUSNUGlyceroluptakefacilitatorproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00505PE=3SV=1	REV__tr|U7T5A8|U7T5A8_FUSNUGlyceroluptakefacilitatorproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00505PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6868896484375	2	550.28714	1098.55973	-1.1438	-0.00062941	0.34831	0.00019167	-0.79548	-0.00043774	550.287182538838	57.346	0.71553	58.095	57.762	58.477	0.74894					27	13	3	0	0	0	0.64789	1	21650	21650		46.021	9.8939	1	10117000	+		34848	28822	25521	25696	33906	33906					0.014389035205795153
LTTGVFEGIY	10	Unmodified	_LTTGVFEGIY_					0	0	0			REV__tr|U7T5A8|U7T5A8_FUSNUGlyceroluptakefacilitatorproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00505PE=3SV=1	REV__tr|U7T5A8|U7T5A8_FUSNUGlyceroluptakefacilitatorproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00505PE=3SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	550.28714	1098.55973	-0.57808	-0.00031811	0.17221	9.4764E-05	-0.40587	-0.00022335	550.2871687577626	58.084	0.81163	58.084	57.72	58.531	0	-0.0055834	-7.1383E-05	NaN	46.021	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7106100	+		34849	28822	25521	25696							0.014389035205795153
LTTHKLAESY	10	Unmodified	_LTTHKLAESY_					0	0	0			REV__ENST00000508110.5_1_4:187347442-187347706:-|nuORF	REV__ENST00000508110.5_1_4:187347442-187347706:-|nuORF	MSMS	A375_MHC_IP_R1	1	581.8035278320312	2	581.808771	1161.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.44	1	89.44	88.94	89.94	0								0	0	0	0.15207	1	32855	32855		13.906	3.8321	1		+		34850	25575	25522	25697	33907	33907					0.028650932978507626
LTTHKRIY	8	Unmodified	_LTTHKRIY_					0	0	0		ZNF98|p.H428Y|1|0.18|ENSG00000197360|chr19:22391953-22391953|G/A|missense_variant;ZNF98|p.H372Y|1|0.33|ENSG00000197360|chr19:22392121-22392121|G/A|missense_variant;ZNF93|p.H335Y|1|0.33|ENSG00000184635|chr19:19933958-19933958|C/T|missense_variant;ZNF737|p.H447Y|1|0.24|ENSG00000237440|chr19:20544864-20544864|G/A|missense_variant;ZNF730|p.H446Y|1|0.27|ENSG00000183850|chr19:23146380-23146380|C/T|missense_variant;ZNF675|p.H334Y|1|0.1|ENSG00000197372|chr19:23653933-23653933|G/A|missense_variant;ZNF492|p.H331Y|1|0.41|ENSG00000229676|chr19:22664660-22664660|C/T|missense_variant;ZNF117|p.H299Y|1|0.23|ENSG00000152926|chr7:64978676-64978676|G/A|missense_variant	ZNF98|p.H428Y|1|0.18|ENSG00000197360|chr19:22391953-22391953|G/A|missense_variant	ZNF98|p.H428Y|1|0.18|ENSG00000197360|chr19:22391953-22391953|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	516.1593627929688	2	516.303458	1030.59236	-0.68201	-0.00035212	3.7488	0.0019355	3.0668	0.0015834	516.8083753238316	91.999	0.30113	92.738	92.585	92.886	0.73901					7	5	2	0	0	0	0.94479	1	35044	35044		13.508	4.9146	1	1294400			34851	30203	25523	25698	33908	33908					0.07829155434092172
LTTIGFGDTV	10	Unmodified	_LTTIGFGDTV_					0	0	0		ENSG00000186795|ENST00000334549|KCNK18	ENSG00000186795|ENST00000334549|KCNK18	ENSG00000186795|ENST00000334549|KCNK18	MULTI-SECPEP	A375_MHC_IP_R2	2	512.6904907226562	2	512.27149	1022.52843	-1.326	-0.00067925	0.40023	0.00020503	-0.92572	-0.00047422	512.2716408786473	53.082	0.71495	53.833	53.638	54.353	0.75105					22	13	2	0	0	0	0.72086	1	20197	20197		18.146	0	1	2200200			34852	8777	25524	25699	33909	33909					0.018063304864767815
LTTLSKKF	8	Unmodified	_LTTLSKKF_					0	0	0		SLIT2|p.P901L|1|0.18|ENSG00000145147|chr4:20553945-20553945|C/T|missense_variant	SLIT2|p.P901L|1|0.18|ENSG00000145147|chr4:20553945-20553945|C/T|missense_variant	SLIT2|p.P901L|1|0.18|ENSG00000145147|chr4:20553945-20553945|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	468.6445617675781	2	469.289485	936.564418	-0.94959	-0.00044563	0.45497	0.00021351	-0.49462	-0.00023212	469.2895506345838	56.214	0.86814	56.964	56.693	57.561	0.75015					25	16	2	0	0	0	0.972	1	21471	21471		4.3292	4.3292	1	1300600			34853	29205	25525	25700	33910	33910					0.09359832453992567
LTTNDLYHAGE	11	Unmodified	_LTTNDLYHAGE_					0	0	0		nc|ENSG00000108684|Q16515|ASIC2	nc|ENSG00000108684|Q16515|ASIC2	nc|ENSG00000108684|Q16515|ASIC2	MULTI-MSMS	A375_MHC_IP_R1	1	617.7476806640625	2	617.290942	1232.56733	-0.35176	-0.00021714	-0.37771	-0.00023315	-0.72946	-0.00045029	617.2905368652916	75.565	0.80581	75.565	75.16	75.966	0					35	14	4	0	0	0	0.47047	1	27550	27550		33.445	9.6551	1	8851900			34854	14535	25526	25701	33911	33911					-0.03964988949837789
LTTNDLYHAGE	11	Unmodified	_LTTNDLYHAGE_					0	0	0		nc|ENSG00000108684|Q16515|ASIC2	nc|ENSG00000108684|Q16515|ASIC2	nc|ENSG00000108684|Q16515|ASIC2	MULTI-SECPEP	A375_MHC_IP_R2	2	617.6906127929688	2	617.290942	1232.56733	-0.72072	-0.00044489	-0.094625	-5.8411E-05	-0.81535	-0.00050331	617.2908620823125	74.807	0.60706	75.545	75.315	75.922	0.73752					21	11	2	0	0	0	0.75073	1	28376	28376		37.075	37.075	1	13755000			34855	14535	25526	25701	33912	33912					-0.03964988949837789
LTTNHPAPLK	10	Unmodified	_LTTNHPAPLK_					0	0	0		ENST00000435981.5_1_7:114758794-114765548:+|nuORF	ENST00000435981.5_1_7:114758794-114765548:+|nuORF	ENST00000435981.5_1_7:114758794-114765548:+|nuORF	MSMS	A375_MHC_IP_R2	2	364.6549072265625	3	364.545108	1090.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.304	1	47.069	46.569	47.569	0.76519								0	0	0	0.15329	1	17337	17337		6.2344	0	1				34856	11921	25527	25702	33913	33913					0.07181120742939129
LTTNNKRNMPF	11	Unmodified	_LTTNNKRNMPF_					0	0	0		tr|U7SZM4|U7SZM4_FUSNUMetal-dependentcarboxypeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00798PE=3SV=1	tr|U7SZM4|U7SZM4_FUSNUMetal-dependentcarboxypeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00798PE=3SV=1	tr|U7SZM4|U7SZM4_FUSNUMetal-dependentcarboxypeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00798PE=3SV=1	MSMS	A375_MHC_IP_R1	1	668.3442993164062	2	668.345529	1334.6765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.48	1	122.48	121.98	122.98	0								0	0	0	0.16108	1	45591	45591		13.042	2.8919	1				34857	29867	25528	25703	33914	33914					0.022553184686785244
LTTPLRAPV	9	Unmodified	_LTTPLRAPV_					0	0	0		ENST00000330736.9_1_16:89351181-89351220:-|nuORF	ENST00000330736.9_1_16:89351181-89351220:-|nuORF	ENST00000330736.9_1_16:89351181-89351220:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	483.64501953125	2	484.300384	966.586216	-0.26459	-0.00012814	0.086909	4.209E-05	-0.17768	-8.6052E-05	484.30031533554455	59.764	0.30579	59.764	59.599	59.905	0					8	5	2	0	0	0	0.67483	1	21479	21479		14.838	0	1	950970			34858	10761	25529	25704	33915	33915					0.10158637202573573
LTTQIVKDI	9	Unmodified	_LTTQIVKDI_					0	0	0		GGT1|p.A235T|1|0.64|ENSG00000100031|chr22:24621040-24621040|G/A|missense_variant	GGT1|p.A235T|1|0.64|ENSG00000100031|chr22:24621040-24621040|G/A|missense_variant	GGT1|p.A235T|1|0.64|ENSG00000100031|chr22:24621040-24621040|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	516.2105712890625	2	515.810782	1029.60701	-0.47504	-0.00024503	-0.28849	-0.00014881	-0.76353	-0.00039384	515.8105723963489	54.68	0.40615	54.68	54.467	54.873	0					13	7	2	0	0	0	0.59098	1	19564	19564		16.149	0	1	4116900			34859	14045	25530	25705	33916	33916					0.09339182791586609
LTTQKILHT	9	Unmodified	_LTTQKILHT_					0	0	0		ENSG00000196247|ENST00000620827|ZNF107;nc|ENSG00000196247|Q9UII5|ZNF107	ENSG00000196247|ENST00000620827|ZNF107	ENSG00000196247|ENST00000620827|ZNF107	MULTI-MSMS	A375_MHC_IP_R2	2	528.2156982421875	2	527.816399	1053.61824	-0.38867	-0.00020515	-0.50219	-0.00026506	-0.89086	-0.00047021	527.8160704904881	43.134	0.80993	43.906	43.523	44.333	0.7724					31	15	3	0	0	0	0.06083	1	16046	16046		60.074	0	1	7474200			34860	9019	25531	25706	33917	33917					0.09358004885712035
LTTQKMMEEL	10	Unmodified	_LTTQKMMEEL_					0	0	0		ENSG00000111860|ENST00000368491|CEP85L;nc|ENSG00000111860|Q5SZL2-4|CEP85L	ENSG00000111860|ENST00000368491|CEP85L	ENSG00000111860|ENST00000368491|CEP85L	MULTI-MSMS	A375_MHC_IP_R2	2	612.64208984375	2	612.304149	1222.59375	-0.54885	-0.00033606	0.059481	3.642E-05	-0.48937	-0.00029964	612.3043463992802	73.006	0.81379	73.741	73.278	74.091	0.7354					26	15	2	0	0	0	0.71361	1	27830	27830		6.2058	6.2058	1	3652900			34861	3035	25532	25707	33918	33918					-0.008647593743262405
LTTQSNPNV	9	Unmodified	_LTTQSNPNV_					0	0	0			REV__ENSG00000066777|ENST00000262215|ARFGEF1	REV__ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-SECPEP	A375_MHC_IP_R1	1	487.6005554199219	2	487.251089	972.487624	-0.34987	-0.00017048	-0.77071	-0.00037553	-1.1206	-0.000546	487.2509819901158	47.114	0.5662	47.114	46.85	47.416	0					16	10	2	0	0	0	0.65246	1	16487	16487		21.747	4.8044	1	2946100	+		34862	16524	25533	25708	33919	33919					0.0002798916685833319
LTTQYVYRRI	10	Unmodified	_LTTQYVYRRI_					0	0	0		nc|ENSG00000139508|Q7Z3Q1-2|SLC46A3;ENSG00000139508|ENST00000266943|SLC46A3	nc|ENSG00000139508|Q7Z3Q1-2|SLC46A3	nc|ENSG00000139508|Q7Z3Q1-2|SLC46A3	MULTI-MSMS	A375_MHC_IP_R1	1	438.588623046875	3	438.250583	1311.72992	-0.21232	-9.3049E-05	0.28329	0.00012415	0.070974	3.1105E-05	438.2507835938138	25.523	0.35711	25.523	25.357	25.714	0					10	6	2	0	0	0	0.71619	1	7511	7511		5.0475	0	1	1382700			34863	5081	25534	25709	33920	33920					0.08652439242837318
LTTSLFSRHI	10	Unmodified	_LTTSLFSRHI_					0	0	0		CCZ1|p.P254S|1|0.39|ENSG00000146574|chr7:5910096-5910096|C/T|missense_variant	CCZ1|p.P254S|1|0.39|ENSG00000146574|chr7:5910096-5910096|C/T|missense_variant	CCZ1|p.P254S|1|0.39|ENSG00000146574|chr7:5910096-5910096|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	392.62432861328125	3	392.224146	1173.65061	0.038599	1.5139E-05	0.34424	0.00013502	0.38284	0.00015016	392.2241987896332	40.102	0.4079	40.102	39.896	40.304	0					17	7	3	0	0	0	0.58757	1	13769	13769		21.799	6.8423	1	3661500			34864	327	25535	25710	33921	33921					0.07072792288727214
LTTSLFSRHI	10	Unmodified	_LTTSLFSRHI_					0	0	0		CCZ1|p.P254S|1|0.39|ENSG00000146574|chr7:5910096-5910096|C/T|missense_variant	CCZ1|p.P254S|1|0.39|ENSG00000146574|chr7:5910096-5910096|C/T|missense_variant	CCZ1|p.P254S|1|0.39|ENSG00000146574|chr7:5910096-5910096|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	392.224146	1173.65061	0.038599	1.5139E-05	0.34424	0.00013502	0.38284	0.00015016	392.2241987896332	40.102	0.4079	40.102	39.896	40.304	0	0.0018868	7.0514E-05	NaN	21.799	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3661500			34865	327	25535	25710							0.07072792288727214
LTTTTPIVWS	10	Unmodified	_LTTTTPIVWS_					0	0	0		ENST00000230053.10_1_6:71571672-71665663:-|nuORF	ENST00000230053.10_1_6:71571672-71665663:-|nuORF	ENST00000230053.10_1_6:71571672-71665663:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	560.20703125	2	559.808239	1117.60193	-0.98237	-0.00054994	-0.382	-0.00021385	-1.3644	-0.00076378	559.8080901942674	61.274	0.90595	62.019	61.718	62.624	0.74503					25	17	2	0	0	0	0.88918	1	23198	23198		13.042	7.7456	1	3857000			34866	10137	25536	25711	33922	33922					0.04782878928926948
LTVAVGNII	9	Unmodified	_LTVAVGNII_					0	0	0		ENSG00000088386|ENST00000376503|SLC15A1	ENSG00000088386|ENST00000376503|SLC15A1	ENSG00000088386|ENST00000376503|SLC15A1	MULTI-SECPEP	A375_MHC_IP_R1	1	449.6612243652344	2	450.28166	898.548768	-0.16419	-7.3932E-05	-0.041065	-1.8491E-05	-0.20526	-9.2423E-05	450.281633820175	42.057	0.60793	42.057	41.828	42.436	0					16	11	2	0	0	0	0.67483	1	14526	14526		20.454	2.3186	1	1702700			34867	1891	25537	25712	33923	33923					0.09543545936958253
LTVAVLLF	8	Unmodified	_LTVAVLLF_					0	0	0		ENST00000574196.1_2_17:7761685-7761781:+|nuORF	ENST00000574196.1_2_17:7761685-7761781:+|nuORF	ENST00000574196.1_2_17:7761685-7761781:+|nuORF	MSMS	A375_MHC_IP_R1	1	438.65997314453125	2	438.283672	874.552791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.43	1	141.43	140.93	141.93	0								0	0	0	0.16876	1	54285	54285		5.2307	0	1				34868	13629	25538	25713	33924	33924					0.1104963543066333
LTVELTVNL	9	Unmodified	_LTVELTVNL_					0	0	0			REV__ENST00000534359.1_1_11:3690561-3692570:-|nuORF	REV__ENST00000534359.1_1_11:3690561-3692570:-|nuORF	MSMS	A375_MHC_IP_R1	1	501.2174072265625	2	501.297507	1000.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.77	1	130.77	130.27	131.27	0								0	0	0	0.026562	1	50372	50372		77.984	0	1		+		34869	18509	25539	25714	33925	33925					0.08019493900224006
LTVETIHEGTF	11	Unmodified	_LTVETIHEGTF_					0	0	0		SETBP1|p.S606F|1|0.17|ENSG00000152217|chr18:44951157-44951157|C/T|missense_variant	SETBP1|p.S606F|1|0.17|ENSG00000152217|chr18:44951157-44951157|C/T|missense_variant	SETBP1|p.S606F|1|0.17|ENSG00000152217|chr18:44951157-44951157|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	624.2196044921875	2	623.819335	1245.62412	-0.50896	-0.0003175	0.11116	6.9342E-05	-0.3978	-0.00024816	623.8194805234077	39.382	0.40528	39.382	39.187	39.592	0					11	7	2	0	0	0	0.9889	1	13480	13480		12.241	10.759	1	2832100			34870	29141	25540	25715	33926	33926					0.011130586067110926
LTVFWSPEL	9	Unmodified	_LTVFWSPEL_					0	0	0		ENST00000590158.1_1_19:10225792-10226817:-|nuORF	ENST00000590158.1_1_19:10225792-10226817:-|nuORF	ENST00000590158.1_1_19:10225792-10226817:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	546.1354370117188	2	546.292225	1090.5699	-0.70953	-0.00038761	-1.602	-0.00087514	-2.3115	-0.0012628	546.2919803736171	66.145	0.76092	66.145	65.819	66.58	0					29	14	3	0	0	0	0.29981	1	24090	24090		30.637	1.555	1	5358200			34871	13782	25541	25716	33927	33927					0.028235112458105505
LTVGFGITV	9	Unmodified	_LTVGFGITV_					0	0	0			REV__ENST00000443649.7_1_12:122702921-122709131:-|nuORF	REV__ENST00000443649.7_1_12:122702921-122709131:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	906.7315063476562	1	906.529495	905.522219	-0.43659	-0.00039579	0.52749	0.00047819	0.090898	8.2402E-05	906.5298064410129	129.4	0.50304	129.64	129.36	129.87	0.23946					17	9	3	0	0	0	0.1277	1	50913	50913		46.021	0	1	52120000	+		34872	21793	25542	25717	33928	33928					0.0656785704561571
LTVHFQTDYP	10	Unmodified	_LTVHFQTDYP_					0	0	0		UBE2D1|p.P57Q|1|0.08|ENSG00000072401|chr10:58363658-58363658|C/A|missense_variant	UBE2D1|p.P57Q|1|0.08|ENSG00000072401|chr10:58363658-58363658|C/A|missense_variant	UBE2D1|p.P57Q|1|0.08|ENSG00000072401|chr10:58363658-58363658|C/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	610.6986694335938	2	610.800946	1219.58734	-0.19133	-0.00011686	-0.22819	-0.00013938	-0.41952	-0.00025624	611.302414651983	82.646	0.55849	82.646	82.265	82.823	0					13	10	2	0	0	0	0.92227	1	30276	30276		13.042	2.2185	1	1391800			34873	30105	25543	25718	33929	33929					-0.013671932191755332
LTVHLSKKF	9	Unmodified	_LTVHLSKKF_					0	0	0		ENSG00000189357|ENST00000419782|SPATA31D4;ENSG00000186788|ENST00000445385|SPATA31D3	ENSG00000189357|ENST00000419782|SPATA31D4	ENSG00000189357|ENST00000419782|SPATA31D4	MSMS	A375_MHC_IP_R2	2	358.2814025878906	3	358.221965	1071.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.213	1	57.962	57.462	58.462	0.7497								0	0	0	0.15486	1	21631	21631		4.897	0.36815	1				34874	8775	25544	25719	33930	33930					0.11110899127993434
LTVHRYETL	9	Unmodified	_LTVHRYETL_					0	0	0			REV__nc|ENSG00000169826|Q8N6G5-2|CSGALNACT2	REV__nc|ENSG00000169826|Q8N6G5-2|CSGALNACT2	MULTI-SECPEP	A375_MHC_IP_R1	1	377.9728088378906	3	377.876746	1130.60841	0.63964	0.00024171	-0.062646	-2.3672E-05	0.577	0.00021803	377.87651725378925	44.423	0.25586	44.423	44.267	44.523	0					7	4	2	0	0	0	0.78351	1	15439	15439		5.2969	0	1	683530	+		34875	20945	25545	25720	33931	33931					0.04832816880343671
LTVKEQTAL	9	Unmodified	_LTVKEQTAL_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-SECPEP	A375_MHC_IP_R1	1	501.092041015625	2	501.795132	1001.57571	0.13282	6.6649E-05	-0.029072	-1.4588E-05	0.10375	5.2061E-05	501.7943199156866	49.057	0.45468	49.057	48.933	49.387	0					14	8	2	0	0	0	0.67539	1	17353	17353		7.609	4.8738	1	1284200	+		34876	21494	25546	25721	33932	33932					0.07498609757453778
LTVKLPDGYEF	11	Unmodified	_LTVKLPDGYEF_					0	0	0		ENST00000472321.1_1_22:38074415-38075753:+|nuORF;ENSG00000100097|ENST00000215909|LGALS1;ENST00000425542.5_1_22:38072875-38075753:+|nuORF	ENST00000472321.1_1_22:38074415-38075753:+|nuORF	ENST00000472321.1_1_22:38074415-38075753:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	641.7398071289062	2	641.339904	1280.66525	-0.80868	-0.00051864	-0.28667	-0.00018385	-1.0954	-0.00070249	641.3396888339003	106.91	0.65926	107.67	107.29	107.95	0.75977					24	12	3	0	0	0	0.041676	1	40415	40415		80.896	54.875	1	1508200			34877	2116	25547	25722	33933	33933					0.03614819646168144
LTVKLPDGYEF	11	Unmodified	_LTVKLPDGYEF_					0	0	0		ENST00000472321.1_1_22:38074415-38075753:+|nuORF;ENSG00000100097|ENST00000215909|LGALS1;ENST00000425542.5_1_22:38072875-38075753:+|nuORF	ENST00000472321.1_1_22:38074415-38075753:+|nuORF	ENST00000472321.1_1_22:38074415-38075753:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	641.339904	1280.66525	-0.33389	-0.00021414	0.42738	0.00027409	0.093486	5.9956E-05	641.340151666832	107.69	0.7153	107.69	107.24	107.95	0	0.010417	0.00050652	NaN	80.896	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2003400			34878	2116	25547	25722							0.03614819646168144
LTVKRQPKL	9	Unmodified	_LTVKRQPKL_					0	0	0			REV__ENSG00000165633|ENST00000332853|VSTM4	REV__ENSG00000165633|ENST00000332853|VSTM4	MULTI-MSMS	A375_MHC_IP_R1	1	361.96087646484375	3	361.572998	1081.69716	0.069282	2.5051E-05	-0.30812	-0.00011141	-0.23884	-8.6358E-05	361.5728750497655	28.313	0.90846	28.313	27.786	28.694	0					26	17	2	0	0	0	0.65748	1	8806	8806		10.8	2.0541	1	4001000	+		34879	20602	25548	25723	33934	33934					0.15958276910646418
LTVKYAYY	8	Unmodified	_LTVKYAYY_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F;ENST00000530219.1_1_11:8014470-8016722:+|nuORF	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MSMS	A375_MHC_IP_R2	2	510.60943603515625	2	510.773668	1019.53278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.633	1	94.378	93.878	94.878	0.74474								0	0	0	0.16876	1	35594	35594		16.942	4.4107	1				34880	7956	25549	25724	33935	33935					0.023798397000291516
LTVLERLLS	9	Unmodified	_LTVLERLLS_					0	0	0			REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF	REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	522.726318359375	2	522.326599	1042.63865	-0.60869	-0.00031793	-0.046017	-2.4036E-05	-0.65471	-0.00034197	522.3265194794484	37.731	0.66454	37.731	37.454	38.118	0					16	12	2	0	0	0	0.75164	1	12741	12741		9.3831	0	1	2429900	+		34881	17605	25550	25725	33936	33936					0.11903175545512568
LTVLEVKYI	9	Unmodified	_LTVLEVKYI_					0	0	0			REV__ENSG00000166578|ENST00000416617|IQCD	REV__ENSG00000166578|ENST00000416617|IQCD	MSMS	A375_MHC_IP_R1	1	539.7310791015625	2	539.33135	1076.64815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.73	1	131.73	131.23	132.23	0								0	0	0	0.14677	1	50786	50786		26.884	0	1		+		34882	20687	25551	25726	33937	33937					0.11288943831027609
LTVLYLMFF	9	Unmodified	_LTVLYLMFF_					0	0	0			REV__OR14C36|p.S28F|1|0.44|ENSG00000177174|chr1:248348857-248348857|C/T|missense_variant	REV__OR14C36|p.S28F|1|0.44|ENSG00000177174|chr1:248348857-248348857|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	574.0740966796875	2	573.817021	1145.61949	-0.24888	-0.00014281	-0.96733	-0.00055507	-1.2162	-0.00069789	573.8162605140367	75.762	0.80582	75.762	75.413	76.219	0					27	15	2	0	0	0	0.65246	1	27498	27498		15.847	4.2069	1	1460000	+		34883	21443	25552	25727	33938	33938					0.05250502930243783
LTVNIENRPS	10	Unmodified	_LTVNIENRPS_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MSMS	A375_MHC_IP_R2	2	572.009033203125	2	571.811845	1141.60914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.694	1	63.437	62.937	63.937	0.74263								0	0	0	0.15038	1	23765	23765		17.113	2.2746	1		+		34884	20554	25553	25728	33939	33939					0.04399611529379399
LTVNQTIRF	9	Unmodified	_LTVNQTIRF_					0	0	0			REV__ENST00000400011.6_1_15:30112733-30113639:-|nuORF	REV__ENST00000400011.6_1_15:30112733-30113639:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	364.94476318359375	3	364.545108	1090.61349	-0.20457	-7.4574E-05	-0.18814	-6.8587E-05	-0.39271	-0.00014316	364.54484397729664	34.637	0.50601	35.401	35.171	35.677	0.76338					16	9	2	0	0	0	0.57432	1	12546	12546		11.518	0.71837	1	5198400	+		34885	24397	25554	25729	33940	33940					0.07181120742961866
LTVQNEQYWQQ	11	Unmodified	_LTVQNEQYWQQ_					0	0	0			REV__nc|ENSG00000159625|Q8IY82-2|DRC7	REV__nc|ENSG00000159625|Q8IY82-2|DRC7	MSMS	A375_MHC_IP_R1	1	479.6427917480469	3	479.565008	1435.67319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.272	1	54.272	53.772	54.772	0								0	0	0	0.1626	1	19366	19366		5.1984	0.79229	1		+		34886	20129	25555	25730	33941	33941					-0.02721653104345023
LTVQNEQYWQQ	11	Unmodified	_LTVQNEQYWQQ_					0	0	0			REV__nc|ENSG00000159625|Q8IY82-2|DRC7	REV__nc|ENSG00000159625|Q8IY82-2|DRC7	MSMS	A375_MHC_IP_R2	2	479.64239501953125	3	479.565008	1435.67319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.489	1	54.24	53.74	54.74	0.75105								0	0	0	0.16253	1	20185	20185		5.5233	1.6774	1		+		34887	20129	25555	25730	33942	33942					-0.02721653104345023
LTVSENLNGI	10	Unmodified	_LTVSENLNGI_					0	0	0			REV__IGF2BP1|p.P15L|1|0.25|ENSG00000159217|chr17:48997789-48997789|C/T|missense_variant	REV__IGF2BP1|p.P15L|1|0.25|ENSG00000159217|chr17:48997789-48997789|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	530.6765747070312	2	530.287671	1058.56079	-0.49911	-0.00026467	0.026703	1.416E-05	-0.47241	-0.00025051	530.2875609102839	68.9	0.50727	69.635	69.323	69.83	0.73511					16	9	2	0	0	0	0.6774	1	26155	26155		27.629	4.8925	1	2003700	+		34888	26779	25556	25731	33943	33943					0.03385117889479261
LTVSLSLSASV	11	Unmodified	_LTVSLSLSASV_					0	0	0		ENSG00000113262|ENST00000517717|GRM6	ENSG00000113262|ENST00000517717|GRM6	ENSG00000113262|ENST00000517717|GRM6	MULTI-MSMS	A375_MHC_IP_R1	1	359.428466796875	3	359.544773	1075.61249	0.090869	3.2671E-05	1.5169	0.00054538	1.6077	0.00057805	359.5451923302239	52.361	0.35463	52.361	52.186	52.541	0					9	6	2	0	0	0	0.73078	1	18571	18571		4.1166	0	1	1568900			34889	3134	25557	25732	33944	33944					0.07770861583389888
LTVSRRGRF	9	Unmodified	_LTVSRRGRF_					0	0	0			REV__ENST00000304191.3_1_15:83654967-83655093:+|nuORF	REV__ENST00000304191.3_1_15:83654967-83655093:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	364.2948913574219	3	364.552597	1090.63596	0.099121	3.6135E-05	1.6813	0.00061291	1.7804	0.00064904	364.55316578227104	37.817	0.40889	37.817	37.658	38.067	0					16	7	3	0	0	0	0.71541	1	12818	12818		11.495	0	1	1266400	+		34890	23453	25558	25733	33945	33945					0.09426764931231446
LTVSSESLQVK	11	Unmodified	_LTVSSESLQVK_					0	0	0			REV__ENSG00000134250|ENST00000256646|NOTCH2	REV__ENSG00000134250|ENST00000256646|NOTCH2	MULTI-MSMS	A375_MHC_IP_R2	2	397.9593811035156	3	397.559082	1189.65542	-0.3697	-0.00014698	0.79023	0.00031416	0.42053	0.00016718	397.5595297292711	34.382	0.40844	35.134	34.904	35.312	0.75225					16	7	3	0	0	0	0.66366	1	12413	12413		11.065	0	1	4831300	+		34891	18763	25559	25734	33946	33946					0.06817631640797117
LTVTLPKNISY	11	Unmodified	_LTVTLPKNISY_					0	0	0		PCDH7|p.P740L|1|0.32|ENSG00000169851|chr4:30723641-30723641|C/T|missense_variant	PCDH7|p.P740L|1|0.32|ENSG00000169851|chr4:30723641-30723641|C/T|missense_variant	PCDH7|p.P740L|1|0.32|ENSG00000169851|chr4:30723641-30723641|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	624.763427734375	2	624.863546	1247.71254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.01	1	135.15	134.65	135.65	0.13901								0	0	0	0.16307	1	53097	53097		2.7352	0	1				34892	15122	25560	25735	33947	33947					0.09859098917195297
LTVTPDEGYY	10	Unmodified	_LTVTPDEGYY_					0	0	0		nc|ENSG00000184182|Q969M7-4|UBE2F;ENST00000417231.5_1_2:238882367-238949976:+|nuORF;nc|ENSG00000184182|Q969M7-7|UBE2F;nc|ENSG00000184182|Q969M7-6|UBE2F;ENSG00000184182|ENST00000272930|UBE2F;nc|ENSG00000184182|Q969M7-2|UBE2F	nc|ENSG00000184182|Q969M7-4|UBE2F	nc|ENSG00000184182|Q969M7-4|UBE2F	MULTI-SECPEP	A375_MHC_IP_R1	1	579.6715087890625	2	579.271687	1156.52882	-0.19524	-0.0001131	-0.41149	-0.00023836	-0.60673	-0.00035146	579.2715021258366	74.544	0.50813	74.544	74.349	74.857	0					14	9	2	0	0	0	0.89109	1	27172	27172		7.2892	2.96	1	1612200			34893	8557	25561	25736	33948	33948					-0.043182945843454945
LTVTPDEGYY	10	Unmodified	_LTVTPDEGYY_					0	0	0		nc|ENSG00000184182|Q969M7-4|UBE2F;ENST00000417231.5_1_2:238882367-238949976:+|nuORF;nc|ENSG00000184182|Q969M7-7|UBE2F;nc|ENSG00000184182|Q969M7-6|UBE2F;ENSG00000184182|ENST00000272930|UBE2F;nc|ENSG00000184182|Q969M7-2|UBE2F	nc|ENSG00000184182|Q969M7-4|UBE2F	nc|ENSG00000184182|Q969M7-4|UBE2F	MULTI-MATCH	A375_MHC_IP_R2	2		2	579.271687	1156.52882	-0.22282	-0.00012907	-0.39122	-0.00022662	-0.61403	-0.00035569	579.2714454197842	73.807	0.46088	74.543	74.244	74.705	0.73612	-0.00068577	1.1627E-05	NaN	7.2892	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1444900			34894	8557	25561	25736							-0.043182945843454945
LTVTRSLL	8	Unmodified	_LTVTRSLL_					0	0	0			REV__ENST00000393085.3_1_7:135613116-135613200:-|nuORF	REV__ENST00000393085.3_1_7:135613116-135613200:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	452.1868591308594	2	451.78711	901.559667	-0.29239	-0.0001321	-0.13303	-6.01E-05	-0.42542	-0.0001922	451.78693187266157	80.392	0.50781	81.137	80.961	81.468	0.74474					14	9	2	0	0	0	0.64636	1	30550	30550		42.095	0	1	1964400	+		34895	24286	25562	25737	33949	33949					0.10494948311225016
LTVVESSLAIT	11	Unmodified	_LTVVESSLAIT_					0	0	0			REV__ENSG00000132429|ENST00000254765|POPDC3	REV__ENSG00000132429|ENST00000254765|POPDC3	MULTI-SECPEP	A375_MHC_IP_R2	2	567.203369140625	2	566.826629	1131.63871	-0.51442	-0.00029159	-0.58148	-0.0003296	-1.0959	-0.00062119	566.8263695240169	50.701	0.91111	51.455	50.804	51.715	0.75406					39	17	3	0	0	0	0.9754	1	19049	19049		17.113	17.113	1	17692000	+		34896	18651	25563	25738	33950	33950					0.07815130754852362
LTVVLNNLR	9	Unmodified	_LTVVLNNLR_					0	0	0		VPS13D|p.F2391L|1|0.25|ENSG00000048707|chr1:12318096-12318096|T/A|missense_variant	VPS13D|p.F2391L|1|0.25|ENSG00000048707|chr1:12318096-12318096|T/A|missense_variant	VPS13D|p.F2391L|1|0.25|ENSG00000048707|chr1:12318096-12318096|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	521.7255859375	2	521.324391	1040.63423	-0.44503	-0.00023201	0.46137	0.00024052	0.016339	8.5182E-06	521.324693844992	47.337	0.51056	48.099	47.867	48.378	0.76128					20	9	3	0	0	0	0.53748	1	17729	17729		24.021	0	1	10512000			34897	30148	25564	25739	33951	33951					0.11553711122587629
LTVVRSIV	8	Unmodified	_LTVVRSIV_					0	0	0			REV__ENSG00000172967|ENST00000684488|XKR3	REV__ENSG00000172967|ENST00000684488|XKR3	MULTI-SECPEP	A375_MHC_IP_R2	2	443.1633605957031	2	443.789653	885.564752	-0.43285	-0.0001921	0.023988	1.0646E-05	-0.40886	-0.00018145	443.7896214420965	74.789	0.40573	75.527	75.315	75.721	0.73752					11	7	2	0	0	0	0.86765	1	28363	28363		18.135	0	1	1255500	+		34898	21185	25565	25740	33952	33952					0.11739252173856585
LTVWTKIH	8	Unmodified	_LTVWTKIH_					0	0	0			REV__nc|ENSG00000226807|Q6ZUA9|MROH5	REV__nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-SECPEP	A375_MHC_IP_R1	1	499.64935302734375	2	499.295102	996.575651	-0.39151	-0.00019548	0.90931	0.00045401	0.5178	0.00025853	499.29536116996	47.374	0.25568	47.374	47.211	47.467	0					6	4	2	0	0	0	0.94479	1	16643	16643		8.5933	0	1	1113800	+		34899	27507	25566	25741	33953	33953					0.07722654548115315
LTVWTKIH	8	Unmodified	_LTVWTKIH_					0	0	0			REV__nc|ENSG00000226807|Q6ZUA9|MROH5	REV__nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-SECPEP	A375_MHC_IP_R2	2	498.6611633300781	2	499.295102	996.575651	-0.4195	-0.00020946	-0.35351	-0.00017651	-0.77302	-0.00038596	499.29478081090326	46.497	0.35769	47.263	47.058	47.416	0.76519					8	6	2	0	0	0	0.94479	1	17353	17353		8.5933	4.6489	1	1519600	+		34900	27507	25566	25741	33954	33954					0.07722654548115315
LTVWTSSSF	9	Unmodified	_LTVWTSSSF_					0	0	0			REV__nc|ENSG00000120526|Q96RS6-3|NUDCD1	REV__nc|ENSG00000120526|Q96RS6-3|NUDCD1	MULTI-SECPEP	A375_MHC_IP_R2	2	514.6500854492188	2	514.258382	1026.50221	-0.8196	-0.00042149	1.1204	0.00057619	0.30083	0.00015471	514.2588017041475	67.007	0.35537	67.743	67.495	67.85	0.73631					9	6	2	0	0	0	0.47368	1	25377	25377		20.454	0	1	1454300	+		34901	18127	25567	25742	33955	33955					-0.009979386850091032
LTVYVPRGYI	10	Unmodified	_LTVYVPRGYI_					0	0	0			REV__ENSG00000112367|ENST00000230124|FIG4	REV__ENSG00000112367|ENST00000230124|FIG4	MULTI-SECPEP	A375_MHC_IP_R1	1	393.9606628417969	3	394.229008	1179.66519	-0.23536	-9.2787E-05	1.3883	0.00054729	1.1529	0.0004545	394.22907294055454	29.039	0.30272	29.039	28.795	29.098	0					7	5	2	0	0	0	0.94269	1	9049	9049		1.5923	0	1	1288100	+		34902	17729	25568	25743	33956	33956					0.08254864436867138
LTWAKQHQQR	10	Unmodified	_LTWAKQHQQR_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	A375_MHC_IP_R1	1	432.9701232910156	3	432.570427	1294.68945	-0.27079	-0.00011714	-0.96726	-0.00041841	-1.238	-0.00053554	432.569874763339	19.43	0.63953	19.43	19.238	19.877	0					19	12	3	0	0	0	0.94269	1	4945	4945		3.3196	0	1	3530600			34903	4099;14587;14586	25569	25744	33957	33957					0.05389517643061481
LTWAQLKKL	9	Unmodified	_LTWAQLKKL_					0	0	0		nc|ENSG806|P61576|HERV-K104_rec	nc|ENSG806|P61576|HERV-K104_rec	nc|ENSG806|P61576|HERV-K104_rec	MULTI-MSMS	A375_MHC_IP_R2	2	367.9658508300781	3	367.565732	1099.67537	0.1186	4.3593E-05	0.016612	6.1059E-06	0.13521	4.9699E-05	367.56567392408505	75.137	0.50573	75.874	75.467	75.973	0.73752					16	9	2	0	0	0	0.67152	1	28504	28504		9.544	0.56773	1	2429800			34904	14967	25570	25745	33958	33958					0.1295147216208079
LTWAWLGGL	9	Unmodified	_LTWAWLGGL_					0	0	0			REV__nc|ENSG00000086289|Q9UM22-2|EPDR1	REV__nc|ENSG00000086289|Q9UM22-2|EPDR1	MULTI-SECPEP	A375_MHC_IP_R1	1	509.1470947265625	2	508.781828	1015.5491	-0.31687	-0.00016122	3.1488	0.0016021	2.832	0.0014409	509.2857978018917	97.111	0.20226	97.111	96.985	97.187	0					5	3	2	0	0	0	0.28418	1	35694	35694		30.225	0	1	294940	+		34905	16852	25571	25746	33959	33959					0.04194965656813565
LTWDLPPMSQ	10	Unmodified	_LTWDLPPMSQ_					0	0	0		ENST00000347624.3_1_3:194078774-194078948:-|nuORF	ENST00000347624.3_1_3:194078774-194078948:-|nuORF	ENST00000347624.3_1_3:194078774-194078948:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	396.5840148925781	3	396.530358	1186.56925	-0.59923	-0.00023761	3.3975	0.0013472	2.7983	0.0011096	396.5301346370224	34.004	0.35316	34.756	34.45	34.803	0.75225					10	6	2	0	0	0	0.91442	1	12140	12140		7.0371	0	1	1031300			34906	10914	25572	25747	33960	33960					-0.01657651465575327
LTWEIEDVY	9	Unmodified	_LTWEIEDVY_					0	0	0			REV__ENST00000553777.1_1_14:23386935-23387010:-|nuORF	REV__ENST00000553777.1_1_14:23386935-23387010:-|nuORF	MSMS	A375_MHC_IP_R2	2	584.3799438476562	2	584.282054	1166.54956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.304	1	84.043	83.543	84.543	0.73962								0	0	0	0.15486	1	31662	31662		12.532	2.4576	1		+		34907	26069	25573	25748	33961	33961					-0.027057042046635615
LTWKRWRRCWE	11	Unmodified	_LTWKRWRRCWE_					0	0	0		ENST00000415950.4_2_19:35528037-35528250:+|nuORF	ENST00000415950.4_2_19:35528037-35528250:+|nuORF	ENST00000415950.4_2_19:35528037-35528250:+|nuORF	MSMS	A375_MHC_IP_R1	1	540.6890258789062	3	540.617383	1618.83032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.971	1	83.971	83.471	84.471	0								0	0	0	0.16334	1	30742	30742		0.45452	0.35968	1				34908	11685	25574	25749	33962	33962					0.04565773024842201
LTWKSNRHF	9	Unmodified	_LTWKSNRHF_					0	0	0			REV__ENSG00000106328|ENST00000265825|FSCN3	REV__ENSG00000106328|ENST00000265825|FSCN3	MULTI-SECPEP	A375_MHC_IP_R2	2	397.280029296875	3	396.880602	1187.61998	-0.74863	-0.00029712	-0.11192	-4.4418E-05	-0.86055	-0.00034154	396.88047204536605	36.915	0.71012	37.686	37.461	38.171	0.7709					25	13	3	0	0	0	0.47368	1	13499	13499		14.405	0	1	5280300	+		34909	17441	25575	25750	33963	33963					0.03367058694311709
LTWLYFWWEVH	11	Unmodified	_LTWLYFWWEVH_					0	0	0		ENSG00000158555|ENST00000336898|GDPD5;ENST00000528031.1_1_11:75167699-75188792:-|nuORF	ENSG00000158555|ENST00000336898|GDPD5	ENSG00000158555|ENST00000336898|GDPD5	MSMS	A375_MHC_IP_R2	2	790.56884765625	2	790.390262	1578.76597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.37	1	115.08	114.58	115.58	0.70985								0	0	0	0.16337	1	43118	43118		1.1933	0.84271	1				34910	6314	25576	25751	33964	33964					-0.00026103580307790253
LTWQKGLK	8	Unmodified	_LTWQKGLK_					0	0	0			REV__DGKE|p.P219L|1|0.15|ENSG00000153933|chr17:56845721-56845721|C/T|missense_variant	REV__DGKE|p.P219L|1|0.15|ENSG00000153933|chr17:56845721-56845721|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	487.3585510253906	2	487.295102	972.575651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.18	1	134.32	133.82	134.82	0.13901								0	0	0	0.16876	1	52785	52785		34.102	1.9855	1		+		34911	15989	25577	25752	33965	33965					0.0882665454812468
LTWSRGEPD	9	Unmodified	_LTWSRGEPD_					0	0	0			REV__ENST00000564333.1_1_16:2487101-2487449:+|nuORF	REV__ENST00000564333.1_1_16:2487101-2487449:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	530.12109375	2	530.756538	1059.49852	-0.67612	-0.00035885	-0.34511	-0.00018317	-1.0212	-0.00054202	530.7563903456905	28.82	0.50622	28.82	28.643	29.149	0					14	9	2	0	0	0	0.38578	1	8990	8990		34.402	7.5181	1	5599100	+		34912	26214	25578	25753	33966	33966					-0.028846084588622034
LTWVLNKIL	9	Unmodified	_LTWVLNKIL_					0	0	0			REV__ENST00000487010.1_1_2:189876447-189876516:+|nuORF	REV__ENST00000487010.1_1_2:189876447-189876516:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	550.2479248046875	2	550.347335	1098.68012	-0.7716	-0.00042465	0.49095	0.00027019	-0.28065	-0.00015446	550.3477231733802	131.15	0.40567	131.15	130.92	131.33	0					13	7	3	0	0	0	0.74651	1	50528	50528		8.5933	0	1	6236200	+		34913	25328	25579	25754	33967	33967					0.1347235630485102
LTWWSTRFRRE	11	Unmodified	_LTWWSTRFRRE_					0	0	0			REV__ENST00000221132.7_1_8:23049241-23049358:-|nuORF	REV__ENST00000221132.7_1_8:23049241-23049358:-|nuORF	MSMS	A375_MHC_IP_R1	1	769.4560546875	2	769.404766	1536.79498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.16	1	129.16	128.66	129.66	0								0	0	0	0.16213	1	49639	49639		7.609	0.50723	1		+		34914	23052	25580	25755	33968	33968					0.0480543376870628
LTYAHGEV	8	Unmodified	_LTYAHGEV_					0	0	0			REV__nc|ENSG00000214711|A8MX76-2|CAPN14	REV__nc|ENSG00000214711|A8MX76-2|CAPN14	MULTI-SECPEP	A375_MHC_IP_R2	2	445.6239013671875	2	445.224342	888.434132	-0.60727	-0.00027037	0.037281	1.6598E-05	-0.56999	-0.00025377	445.2243786156818	56.134	0.56129	56.884	56.54	57.101	0.75015					14	10	2	0	0	0	0.972	1	21243	21243		8.5933	0	1	1284200	+		34915	22658	25581	25756	33969	33969					-0.014547635449957852
LTYEQSKNQ	9	Unmodified	_LTYEQSKNQ_					0	0	0			REV__tr|U7T6I0|U7T6I0_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00244PE=4SV=1	REV__tr|U7T6I0|U7T6I0_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00244PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	556.1866455078125	2	555.774928	1109.5353	-0.41025	-0.00022801	0.092697	5.1518E-05	-0.31756	-0.00017649	555.7747945399286	20.73	0.56148	20.73	20.384	20.946	0					16	10	2	0	0	0	0.38603	1	5247	5247		25.399	1.3787	1	1751200	+		34916	28862	25582	25757	33970	33970					-0.015083566329394671
LTYFFLQHLTF	11	Unmodified	_LTYFFLQHLTF_					0	0	0		OR5AK2|p.A67T|1|0.55|ENSG00000181273|chr11:56989112-56989112|G/A|missense_variant	OR5AK2|p.A67T|1|0.55|ENSG00000181273|chr11:56989112-56989112|G/A|missense_variant	OR5AK2|p.A67T|1|0.55|ENSG00000181273|chr11:56989112-56989112|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	715.7325439453125	2	715.379363	1428.74417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.76	1	106.76	106.26	107.26	0								0	0	0	0.16265	1	39183	39183		4.897	0.36815	1				34917	15089	25583	25758	33971	33971					0.04695091671123919
LTYGEYCECYY	11	Unmodified	_LTYGEYCECYY_					0	0	0			REV__MATN3|p.H330Y|1|0.18|ENSG00000132031|chr2:20002009-20002009|G/A|missense_variant	REV__MATN3|p.H330Y|1|0.18|ENSG00000132031|chr2:20002009-20002009|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	703.7679443359375	2	703.767597	1405.52064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.708	1	56.458	55.958	56.958	0.75021								0	0	0	0.16334	1	21048	21048		1.3295	0.13619	1		+		34918	26992	25584	25759	33972	33972					-0.16589932887609393
LTYGICPNTQY	11	Unmodified	_LTYGICPNTQY_					0	0	0			REV__ITGB5|p.K206T|1|0.18|ENSG00000082781|chr3:124841546-124841546|T/G|missense_variant	REV__ITGB5|p.K206T|1|0.18|ENSG00000082781|chr3:124841546-124841546|T/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	636.0670776367188	2	636.800088	1271.58562	-0.68963	-0.00043916	-4.3788	-0.0027884	-5.0685	-0.0032276	636.7979504798857	75.509	0.30193	75.509	75.312	75.614	0					6	5	2	0	0	0	0.99227	1	27518	27518		2.9952	0	1	781800	+		34919	26807	25585	25760	33973	33973					-0.03930570299462488
LTYHDKDLYQ	10	Unmodified	_LTYHDKDLYQ_					0	0	0			REV__ENSG00000112796|ENST00000371383|ENPP5	REV__ENSG00000112796|ENST00000371383|ENPP5	MULTI-SECPEP	A375_MHC_IP_R2	2	648.7164306640625	2	648.31696	1294.61937	-0.8554	-0.00055457	-0.097907	-6.3475E-05	-0.9533	-0.00061804	648.3170361426718	97.295	0.7114	98.051	97.67	98.381	0.75586					20	13	2	0	0	0	0.42954	1	36961	36961		41.84	10.571	1	1841100	+		34920	17756	25586	25761	33974	33974					-0.016158255360551266
LTYKKIYFTLF	11	Unmodified	_LTYKKIYFTLF_					0	0	0			REV__ENSG00000167895|ENST00000318430|TMC8	REV__ENSG00000167895|ENST00000318430|TMC8	MULTI-SECPEP	A375_MHC_IP_R2	2	719.31201171875	2	718.913039	1435.81152	-0.73817	-0.00053068	-0.45988	-0.00033062	-1.198	-0.00086129	718.912715717696	131.92	1.0158	132.11	131.59	132.61	0.18953					50	19	3	0	0	0	0.99227	1	52052	52052		2.9952	2.9952	1	7607800	+		34921	20803	25587	25762	33975	33975					0.1110512188206485
LTYKTVARSF	10	Unmodified	_LTYKTVARSF_					0	0	0			REV__SDK1|p.E862K|1|0.4|ENSG00000146555|chr7:4017334-4017334|G/A|missense_variant	REV__SDK1|p.E862K|1|0.4|ENSG00000146555|chr7:4017334-4017334|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	395.60516357421875	3	395.892396	1184.65536	0.13612	5.3889E-05	-0.11559	-4.5762E-05	0.020527	8.1265E-06	395.8922453455738	53.962	0.65713	53.962	53.707	54.364	0					17	12	2	0	0	0	0.93873	1	19188	19188		1.3296	0	1	1127200	+		34922	27928	25588	25763	33976	33976					0.07041676431458654
LTYMLGPDW	9	Unmodified	_LTYMLGPDW_					0	0	0		nc|ENSG00000139364|Q14DG7-3|TMEM132B;nc|ENSG00000139364|Q14DG7|TMEM132B;ENSG00000139364|ENST00000682704|TMEM132B	nc|ENSG00000139364|Q14DG7-3|TMEM132B	nc|ENSG00000139364|Q14DG7-3|TMEM132B	MSMS	A375_MHC_IP_R1	1	548.15283203125	2	548.26261	1094.51067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.241	1	76.241	75.741	76.741	0								0	0	0	0.15283	1	27788	27788		16.942	2.104	1				34923	5074	25589	25764	33977	33977					-0.0328070804005165
LTYPEVKNK	9	Unmodified	_LTYPEVKNK_					0	0	0		ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENST00000504558.1_1_5:75967701-75969415:+|nuORF;ENST00000512383.1_1_5:75964652-75969784:+|nuORF	ENSG00000145703|ENST00000274364|IQGAP2	ENSG00000145703|ENST00000274364|IQGAP2	MULTI-SECPEP	A375_MHC_IP_R2	2	546.9131469726562	2	546.308406	1090.60226	-0.77085	-0.00042112	-0.39036	-0.00021326	-1.1612	-0.00063438	546.3081345338953	83.287	1.1138	84.026	83.242	84.356	0.73962					32	16	3	0	0	0	0.53783	1	31607	31607		36.506	36.506	1	2587300			34924	5571	25590	25765	33978	33978					0.06058298648804339
LTYPNLQSI	9	Unmodified	_LTYPNLQSI_					0	0	0			REV__nc|ENSG00000117114|O95490-3|ADGRL2	REV__nc|ENSG00000117114|O95490-3|ADGRL2	MULTI-SECPEP	A375_MHC_IP_R2	2	524.1791381835938	2	524.787307	1047.56006	-0.43371	-0.00022761	-3.4971	-0.0018352	-3.9308	-0.0020628	524.7833360084855	109.06	0.3065	109.81	109.67	109.98	0.74684					6	5	2	0	0	0	0.60917	1	41203	41203		9.3831	0	1	563670	+		34925	17992	25591	25766	33979	33979					0.03818323240443533
LTYPRAVVL	9	Unmodified	_LTYPRAVVL_					0	0	0		ENST00000415075.5_1_9:134378361-134382761:+|nuORF	ENST00000415075.5_1_9:134378361-134382761:+|nuORF	ENST00000415075.5_1_9:134378361-134382761:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	515.6660766601562	2	516.316035	1030.61752	-0.5789	-0.00029889	0.088572	4.5731E-05	-0.49033	-0.00025316	516.3158830138711	115.31	0.66197	116	115.63	116.29	0.68999					21	12	3	0	0	0	0.67483	1	43455	43455		10.074	0	1	1988300			34926	11673	25592	25767	33980	33980					0.10343210236646883
LTYRQIKY	8	Unmodified	_LTYRQIKY_					0	0	0		nc|ENSG00000105143|P48664-2|SLC1A6;ENSG00000105143|ENST00000594383|SLC1A6	nc|ENSG00000105143|P48664-2|SLC1A6	nc|ENSG00000105143|P48664-2|SLC1A6	MULTI-SECPEP	A375_MHC_IP_R2	2	543.2109375	2	542.811116	1083.60768	-1.2101	-0.00065686	0.048446	2.6297E-05	-1.1617	-0.00063056	542.8109136180778	59.518	0.70708	60.266	59.946	60.653	0.74714					19	13	2	0	0	0	0.92867	1	22541	22541		30.225	10.786	1	1917300			34927	2570	25593	25768	33981	33981					0.06922022231265146
LTYRVEVERLS	11	Unmodified	_LTYRVEVERLS_					0	0	0			REV__ENST00000425245.1_1_1:214706446-214706704:+|nuORF	REV__ENST00000425245.1_1_1:214706446-214706704:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	455.1655578613281	3	455.589265	1363.74596	-0.24053	-0.00010958	0.2272	0.00010351	-0.013332	-6.0739E-06	455.58929133506274	60.262	0.55999	60.262	60.006	60.566	0					15	10	2	0	0	0	0.98524	1	21700	21700		3.5927	0.96144	1	2034300	+	+	34928	15849	25594	25769	33982	33982					0.07864100689107545
LTYSREPIL	9	Unmodified	_LTYSREPIL_					0	0	0			REV__ADAM15|p.T146I|1|0.15|ENSG00000143537|chr1:155054331-155054331|C/T|missense_variant	REV__ADAM15|p.T146I|1|0.15|ENSG00000143537|chr1:155054331-155054331|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	546.2486572265625	2	546.308406	1090.60226	-0.69037	-0.00037715	-0.17106	-9.3451E-05	-0.86143	-0.0004706	546.3083252792235	84.087	0.96194	84.087	83.736	84.697	0					38	18	3	0	0	0	0.71071	1	30799	30799		6.2058	6.2058	1	2819100	+		34929	15309	25595	25770	33983	33983					0.06058298648804339
LTYTIKPNLY	10	Unmodified	_LTYTIKPNLY_					0	0	0		tr|U7SKV9|U7SKV9_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01950PE=4SV=1	tr|U7SKV9|U7SKV9_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01950PE=4SV=1	tr|U7SKV9|U7SKV9_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01950PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	613.1981811523438	2	613.344989	1224.67542	0.057564	3.5307E-05	-2.3608	-0.001448	-2.3033	-0.0014127	613.3434546127091	69.216	0.25632	69.216	69.07	69.326	0					6	4	2	0	0	0	0.92389	1	25071	25071		7.2892	1.0834	1	773140			34930	29486	25596	25771	33984	33984					0.07207427371417907
LTYTNWNEG	9	Unmodified	_LTYTNWNEG_					0	0	0		ENSG00000165471|ENST00000674931|MBL2	ENSG00000165471|ENST00000674931|MBL2	ENSG00000165471|ENST00000674931|MBL2	MULTI-MSMS	A375_MHC_IP_R2	2	366.4359130859375	3	366.501456	1096.48254	-0.26359	-9.6606E-05	-0.28196	-0.00010334	-0.54555	-0.00019994	366.50120228097046	26.511	0.45784	27.171	27.008	27.466	0.65992					14	8	2	0	0	0	0.7235	1	8898	8898		4.897	4.897	1	2827500			34931	6955	25597	25772	33985	33985					-0.06184314695769899
LTYTNWNEG	9	Unmodified	_LTYTNWNEG_					0	0	0		ENSG00000165471|ENST00000674931|MBL2	ENSG00000165471|ENST00000674931|MBL2	ENSG00000165471|ENST00000674931|MBL2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	366.501456	1096.48254	-0.26359	-9.6606E-05	-0.28196	-0.00010334	-0.54555	-0.00019994	366.50120228097046	26.511	0.45784	27.171	27.008	27.466	0.65992	0.0092887	2.7843E-05	NaN	4.897	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2827500			34932	6955	25597	25772							-0.06184314695769899
LTYYETSN	8	Unmodified	_LTYYETSN_					0	0	0			REV__ENSG00000138829|ENST00000262464|FBN2	REV__ENSG00000138829|ENST00000262464|FBN2	MULTI-SECPEP	A375_MHC_IP_R1	1	495.13433837890625	2	495.724372	989.434192	-0.59016	-0.00029256	1.9148	0.00094922	1.3247	0.00065666	495.72310587551954	86.088	0.20076	86.088	85.971	86.172	0					5	3	2	0	0	0	0.92636	1	31568	31568		16.942	5.302	1	403480	+		34933	19127	25598	25773	33986	33986					-0.060948083356493044
LTYYIDWW	8	Unmodified	_LTYYIDWW_					0	0	0			REV__ENST00000513648.5_1_5:102201854-102209236:+|nuORF	REV__ENST00000513648.5_1_5:102201854-102209236:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	580.6748657226562	2	580.276575	1158.5386	-0.39445	-0.00022889	-0.88428	-0.00051313	-1.2787	-0.00074202	580.2757594577109	71.018	0.75905	71.752	71.302	72.061	0.73421					22	14	2	0	0	0	0.972	1	26858	26858		0.69038	0	1	2342100	+		34934	25643	25599	25774	33987	33987					-0.03433061788291525
LVAASLSVP	9	Unmodified	_LVAASLSVP_					0	0	0			REV__ENST00000270139.7_1_21:34728337-34728493:+|nuORF	REV__ENST00000270139.7_1_21:34728337-34728493:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	429.2908630371094	2	428.760561	855.506569	-0.16424	-7.0422E-05	-0.04032	-1.7288E-05	-0.20456	-8.7709E-05	428.76050600617583	41.959	0.71654	42.734	42.401	43.118	0.77451					31	13	3	0	0	0	0.58047	1	15475	15475		15.847	4.2069	1	8772800	+		34935	23271	25600	25775	33988	33988					0.0730357052857471
LVAASQAALGL	11	Unmodified	_LVAASQAALGL_					0	0	0		nc|ENSG00000163631|P02768-3|ALB;ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-2|ALB	nc|ENSG00000163631|P02768-3|ALB	nc|ENSG00000163631|P02768-3|ALB	MULTI-MSMS	A375_MHC_IP_R1	1	507.7027282714844	2	507.303124	1012.5917	-0.55606	-0.00028209	0.0083391	4.2305E-06	-0.54772	-0.00027786	507.30305249100803	90.256	0.86197	90.256	89.88	90.742	0					27	16	3	0	0	0	0.033021	1	33170	33170		82.529	30.9	1	3641600		+	34936	585	25601	25776	33989	33989					0.08590315994376851
LVADVLTSL	9	Unmodified	_LVADVLTSL_					0	0	0		nc|ENSG00000068137|Q7Z736-4|PLEKHH3;ENST00000456950.6_1_17:40821512-40828020:-|nuORF;nc|ENSG00000068137|Q7Z736-2|PLEKHH3;ENST00000591490.5_1_17:40821740-40828722:-|nuORF	nc|ENSG00000068137|Q7Z736-4|PLEKHH3	nc|ENSG00000068137|Q7Z736-4|PLEKHH3	MSMS	A375_MHC_IP_R1	1	465.6867370605469	2	465.778951	929.543348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.567	1	76.567	76.067	77.067	0								0	0	0	0.13805	1	27913	27913		30.225	5.5509	1				34937	12138	25602	25777	33990	33990					0.07575822354476713
LVAERLRPRA	10	Unmodified	_LVAERLRPRA_					0	0	0		ENST00000553532.5_2_12:56843110-56843170:-|nuORF	ENST00000553532.5_2_12:56843110-56843170:-|nuORF	ENST00000553532.5_2_12:56843110-56843170:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	590.2247924804688	2	590.867289	1179.72002	-0.60895	-0.00035981	-0.73148	-0.0004322	-1.3404	-0.00079201	590.8666416824988	134.95	0.86391	134.95	134.78	135.64	0					36	16	4	0	0	0	0.93615	1	52119	52119		7.2892	7.2892	1	22925000			34938	13401	25603	25778	33991	33991					0.13735296028130506
LVAKIHKQ	8	Unmodified	_LVAKIHKQ_					0	0	0			REV__ENSG00000078898|ENST00000170150|BPIFB2	REV__ENSG00000078898|ENST00000170150|BPIFB2	MULTI-SECPEP	A375_MHC_IP_R2	2	936.8367919921875	1	936.598912	935.591636	-0.56099	-0.00052543	0.068902	6.4533E-05	-0.49209	-0.00046089	936.5989637868403	60.224	0.20461	60.969	60.802	61.006	0.74551					5	3	2	0	0	0	0.972	1	22784	22784		0.69038	0	1	1549600	+		34939	16721	25604	25779	33992	33992					0.12126360785043744
LVALIHMVKK	10	Unmodified	_LVALIHMVKK_					0	0	0		ENST00000494880.5_1_1:185269193-185269247:-|nuORF	ENST00000494880.5_1_1:185269193-185269247:-|nuORF	ENST00000494880.5_1_1:185269193-185269247:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	384.94647216796875	3	384.582617	1150.72602	-0.74299	-0.00028574	-0.70515	-0.00027119	-1.4481	-0.00055693	384.5822560820296	36.896	0.55836	37.667	37.41	37.968	0.7709					24	10	3	0	0	0	0.7154	2	13397	13397;13508		5.4027	5.4027	1	8042300			34940	12697	25605	25780	33993;33994	33993					0.1566867821543383
LVAPLIAKLPT	11	Unmodified	_LVAPLIAKLPT_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MSMS	A375_MHC_IP_R1	1	379.2889709472656	3	379.253154	1134.73763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.684	1	60.684	60.184	61.184	0								0	0	0	0.1628	1	21852	21852		4.1166	1.8339	1				34941	8598	25606	25781	33995	33995					0.17565198510419577
LVAPRFTHYLD	11	Unmodified	_LVAPRFTHYLD_					0	0	0			REV__ENST00000477168.6_1_19:36037622-36038346:+|nuORF	REV__ENST00000477168.6_1_19:36037622-36038346:+|nuORF	MSMS	A375_MHC_IP_R2	2	666.059326171875	2	666.358962	1330.70337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.74	1	104.51	104.01	105.01	0.76428								0	0	0	0.16138	1	39277	39277		11.495	3.3392	1		+		34942	25197	25607	25782	33996	33996					0.05124750351524199
LVAQNGLVI	9	Unmodified	_LVAQNGLVI_					0	0	0			REV__ENST00000302517.7_1_5:139063018-139063435:+|nuORF	REV__ENST00000302517.7_1_5:139063018-139063435:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	464.1869201660156	2	463.78711	925.559667	-0.76831	-0.00035633	-0.61572	-0.00028556	-1.384	-0.0006419	463.78716397826366	66.032	0.45943	66.77	66.526	66.985	0.73812					10	8	2	0	0	0	0.55359	1	25055	25055		15.847	2.3393	1	1103000	+		34943	23437	25608	25783	33997	33997					0.09390948311227021
LVARLIIHF	9	Unmodified	_LVARLIIHF_					0	0	0		SPECC1L-MED15|5|fusion;SPECC1L-MED15|1|fusion;SPECC1L-MED15|6|fusion;SPECC1L-MED15|2|fusion;SPECC1L-MED15|3|fusion;SPECC1L-MED15|4|fusion;nc|ENSG00000099917|Q96RN5-3|MED15;nc|ENSG00000099917|Q96RN5-2|MED15;ENSG00000099917|ENST00000263205|MED15	SPECC1L-MED15|5|fusion;nc|ENSG00000099917|Q96RN5-3|MED15	SPECC1L-MED15|5|fusion	MSMS	A375_MHC_IP_R1	1	361.17578125	3	361.234205	1080.68079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.129	1	18.129	17.629	18.629	0								0	0	0	0.15486	1	4303	4303		0.23584	0	1				34944	29231;2093	25609	25784	33998	33998					0.14367195744557648
LVARWKGY	8	Unmodified	_LVARWKGY_					0	0	0			REV__ALDOB|p.F145Y|1|0.41|ENSG00000136872|chr9:101427588-101427588|A/T|missense_variant	REV__ALDOB|p.F145Y|1|0.41|ENSG00000136872|chr9:101427588-101427588|A/T|missense_variant	MSMS	A375_MHC_IP_R1	1	496.7218933105469	2	496.787444	991.560336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.77	1	135.77	135.27	136.27	0								0	0	0	0.16876	1	52322	52322		5.2307	0	1		+		34945	15356	25610	25785	33999	33999					0.0642178775094635
LVASTAKAER	10	Unmodified	_LVASTAKAER_					0	0	0			REV__RGPD4|p.E1677K|1|0.18|ENSG00000196862|chr2:107880072-107880072|G/A|missense_variant	REV__RGPD4|p.E1677K|1|0.18|ENSG00000196862|chr2:107880072-107880072|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	523.702880859375	2	523.303655	1044.59276	-1.0478	-0.0005483	0.2247	0.00011759	-0.82306	-0.00043071	523.3035940771431	123.2	2.8266	123.2	121.97	124.8	0					123	55	4	0	0	0	0.71047	1	46979	46979		7.609	1.4032	1	217080000	+		34946	27885	25611	25786	34000	34000					0.07224530363282611
LVASTAKAER	10	Unmodified	_LVASTAKAER_					0	0	0			REV__RGPD4|p.E1677K|1|0.18|ENSG00000196862|chr2:107880072-107880072|G/A|missense_variant	REV__RGPD4|p.E1677K|1|0.18|ENSG00000196862|chr2:107880072-107880072|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	523.7036743164062	2	523.303655	1044.59276	-0.54498	-0.00028519	-0.10731	-5.6154E-05	-0.65228	-0.00034134	523.3034170946491	123.08	3.6957	123.46	121.81	125.5	0.3766					181	72	4	0	0	0	0.70334	1	47401	47401		10.8	5.0677	1	222110000	+		34947	27885	25611	25786	34001	34001					0.07224530363282611
LVASVTALSI	10	Unmodified	_LVASVTALSI_					0	0	0			REV__nc|ENSG00000104299|Q9NV88-3|INTS9	REV__nc|ENSG00000104299|Q9NV88-3|INTS9	MULTI-SECPEP	A375_MHC_IP_R2	2	487.7372741699219	2	487.30005	972.585547	-0.64808	-0.00031581	0.12332	6.0096E-05	-0.52476	-0.00025571	487.3000927472959	72.668	0.81444	73.404	73.226	74.041	0.73541					20	15	2	0	0	0	0.42954	1	27581	27581		34.402	0	1	1399500	+		34948	17312	25612	25787	34002	34002					0.09815797762848888
LVATDNYLI	9	Unmodified	_LVATDNYLI_					0	0	0			REV__nc|ENSG00000073417|O60658-6|PDE8A	REV__nc|ENSG00000073417|O60658-6|PDE8A	MULTI-SECPEP	A375_MHC_IP_R1	1	511.6817626953125	2	511.281857	1020.54916	-0.46279	-0.00023661	0.40003	0.00020453	-0.062755	-3.2085E-05	511.2820564429546	73.462	0.65894	73.462	73.031	73.69	0					18	12	2	0	0	0	0.55359	1	26759	26759		15.847	0	1	3000300	+		34949	16619	25613	25788	34003	34003					0.03970920866152028
LVATDNYLI	9	Unmodified	_LVATDNYLI_					0	0	0			REV__nc|ENSG00000073417|O60658-6|PDE8A	REV__nc|ENSG00000073417|O60658-6|PDE8A	MULTI-MATCH	A375_MHC_IP_R2	2		2	511.281857	1020.54916	-0.8454	-0.00043224	0.24392	0.00012471	-0.60148	-0.00030753	511.281843513923	72.631	0.50903	73.366	73.124	73.633	0.73541	-0.047907	-6.5067E-05	NaN	19.257	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2490800	+		34950	16619	25613	25788							0.03970920866152028
LVAVDVRAVW	10	Unmodified	_LVAVDVRAVW_					0	0	0		ENST00000602725.5_1_1:32373878-32374037:-|nuORF	ENST00000602725.5_1_1:32373878-32374037:-|nuORF	ENST00000602725.5_1_1:32373878-32374037:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	564.1813354492188	2	564.332216	1126.64988	-0.42575	-0.00024026	0.14145	7.9823E-05	-0.2843	-0.00016044	564.3322580863857	57.79	0.40594	57.79	57.568	57.974	0					18	7	3	0	0	0	0.87163	1	20743	20743		13.906	0	1	7085100			34951	13888	25614	25789	34004	34004					0.09161997639648689
LVAVILLLLLL	11	Unmodified	_LVAVILLLLLL_					0	0	0		nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6-3|LILRB1;ENSG00000104972|ENST00000324602|LILRB1;ENST00000462628.5_1_19:55146093-55147330:+|nuORF	nc|ENSG00000104972|Q8NHL6|LILRB1	nc|ENSG00000104972|Q8NHL6|LILRB1	MSMS	A375_MHC_IP_R2	2	596.9736328125	2	596.935786	1191.85702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.945	1	81.69	81.19	82.19	0.74474								0	0	0	0.1636	1	30737	30737		0	0	1				34952	2560	25615	25790	34005	34005					0.2687639213515922
LVAYKREL	8	Unmodified	_LVAYKREL_					0	0	0			REV__ENST00000549988.5_1_12:76453547-76478450:-|nuORF	REV__ENST00000549988.5_1_12:76453547-76478450:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	496.7003479003906	2	496.300384	990.586216	-0.23962	-0.00011893	0.43539	0.00021608	0.19576	9.7156E-05	496.30058795854205	94.492	0.45712	95.237	94.969	95.426	0.74473					14	8	2	0	0	0	0.69583	1	35956	35956		36.044	1.9418	1	3162100	+		34953	22009	25616	25791	34006	34006					0.0905463720255284
LVCFTVNDP	9	Unmodified	_LVCFTVNDP_					0	0	0			REV__ENSG00000130222|ENST00000252506|GADD45G	REV__ENSG00000130222|ENST00000252506|GADD45G	MSMS	A375_MHC_IP_R2	2	504.1999816894531	2	504.24696	1006.47937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.861	1	68.596	68.096	69.096	0.73511								0	0	0	0.1521	1	25716	25716		18.135	3.5533	1		+		34954	18527	25617	25792	34007	34007					-0.02361281074126964
LVCVERRERAR	11	Unmodified	_LVCVERRERAR_					0	0	0		ENST00000588173.1_1_19:13263882-13264203:+|nuORF	ENST00000588173.1_1_19:13263882-13264203:+|nuORF	ENST00000588173.1_1_19:13263882-13264203:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	694.2901000976562	2	693.890969	1385.76739	-0.93437	-0.00064835	-1.0817	-0.00075057	-2.016	-0.0013989	693.8906606250075	137.92	0.25885	137.92	137.79	138.05	0					10	4	3	0	0	0	0.99526	1	53073	53073		3.5965	0	1	3798800			34955	13757	25618	25793	34008	34008					0.0899320723681285
LVDAFVEHRY	10	Unmodified	_LVDAFVEHRY_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-MSMS	A375_MHC_IP_R1	1	417.6474304199219	3	416.8839	1247.62987	0.22521	9.3887E-05	-0.3883	-0.00016188	-0.16309	-6.7989E-05	416.88379646070086	50.634	0.45713	50.634	50.357	50.814	0					17	8	3	0	0	0	0.57453	1	17981	17981		22.775	11.876	1	2254400			34956	4399	25619	25794	34009	34009					0.01596201909046613
LVDAFVEHRY	10	Unmodified	_LVDAFVEHRY_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-SECPEP	A375_MHC_IP_R2	2	417.6473388671875	3	416.8839	1247.62987	-0.28692	-0.00011961	0.012095	5.0422E-06	-0.27483	-0.00011457	416.88381720396313	49.873	0.35907	50.627	50.394	50.753	0.75406					11	6	2	0	0	0	0.85215	1	18717	18717		19.987	11.543	1	2290000			34957	4399	25619	25794	34010	34010					0.01596201909046613
LVDALKHDL	9	Unmodified	_LVDALKHDL_					0	0	0		nc|ENSG00000183914|Q9P225-2|DNAH2;ENSG00000183914|ENST00000572933|DNAH2	nc|ENSG00000183914|Q9P225-2|DNAH2	nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-SECPEP	A375_MHC_IP_R1	1	512.6950073242188	2	512.295299	1022.57605	-0.66239	-0.00033934	0.049828	2.5526E-05	-0.61257	-0.00031381	512.295195298928	86.527	0.80887	86.527	86.022	86.831	0					23	15	2	0	0	0	0.56537	1	31741	31741		17.113	7.039	1	2934700			34958	8541	25620	25795	34011	34011					0.0656602947731244
LVDASGEFTE	10	Unmodified	_LVDASGEFTE_					0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	MULTI-SECPEP	A375_MHC_IP_R2	2	534.647705078125	2	534.248212	1066.48187	-0.77533	-0.00041422	0.36824	0.00019673	-0.40708	-0.00021748	534.2485943126242	76.441	0.91167	77.182	76.893	77.805	0.74052					51	17	4	0	0	0	0.72086	1	28986	28986		30.637	13.694	1	12817000	+		34959	16329	25621	25796	34012	34012					-0.048711541354578
LVDDNYFYL	9	Unmodified	_LVDDNYFYL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	A375_MHC_IP_R2	2	581.6757202148438	2	581.276772	1160.53899	-0.29186	-0.00016965	-1.09	-0.00063357	-1.3818	-0.00080322	581.2761428605533	125.69	0.25327	125.98	125.87	126.12	0.2951					10	4	3	0	0	0	0.65246	1	49142	49142		21.747	7.165	1	8257200			34960	7864	25622	25797	34013	34013					-0.034856868590850354
LVDEWLDSY	9	Unmodified	_LVDEWLDSY_					0	0	0		nc|ENSG00000292277|Q9UJ98|STAG3;ENSG00000066923|ENST00000615138|STAG3;nc|ENSG00000292277|Q9UJ98-2|STAG3;ENST00000416602.6_1_7:66767701-66771051:+|nuORF;ENST00000496157.5_1_7:99775584-99786236:+|nuORF	nc|ENSG00000292277|Q9UJ98|STAG3	nc|ENSG00000292277|Q9UJ98|STAG3	MULTI-MSMS	A375_MHC_IP_R1	1	570.2099609375	2	570.266404	1138.51826	-0.012107	-6.904E-06	0.39935	0.00022774	0.38724	0.00022083	570.2667129214648	116.64	0.71313	116.64	116.34	117.06	0					29	13	3	0	0	0	0.0097736	1	42791	42791		112.59	66.572	1	8025400			34961	1422	25623	25798	34014	34014					-0.045462772387509176
LVDEWLDSY	9	Unmodified	_LVDEWLDSY_					0	0	0		nc|ENSG00000292277|Q9UJ98|STAG3;ENSG00000066923|ENST00000615138|STAG3;nc|ENSG00000292277|Q9UJ98-2|STAG3;ENST00000416602.6_1_7:66767701-66771051:+|nuORF;ENST00000496157.5_1_7:99775584-99786236:+|nuORF	nc|ENSG00000292277|Q9UJ98|STAG3	nc|ENSG00000292277|Q9UJ98|STAG3	MULTI-MSMS	A375_MHC_IP_R2	2	570.6655883789062	2	570.266404	1138.51826	-0.13411	-7.6481E-05	-0.3882	-0.00022138	-0.52231	-0.00029786	570.266062350534	115.99	0.60999	116.68	116.29	116.9	0.68999					23	11	4	0	0	0	0.0090669	2	43691	43659;43691		100.37	54.351	1	10367000			34962	1422	25623	25798	34015;34016	34016					-0.045462772387509176
LVDGGQALE	9	Unmodified	_LVDGGQALE_					0	0	0			REV__nc|ENSG00000139908|Q6SA08-3|TSSK4	REV__nc|ENSG00000139908|Q6SA08-3|TSSK4	MULTI-SECPEP	A375_MHC_IP_R1	1	900.855224609375	1	901.462538	900.455261	0.043167	3.8913E-05	-0.39554	-0.00035656	-0.35237	-0.00031765	901.4615745910386	72.012	1.1151	72.012	71.765	72.88	0					30	21	3	0	0	0	0.47368	1	26498	26498		34.102	13.649	1	6600600	+		34963	27259	25624	25799	34017	34017					0.001052017638585312
LVDGGQALE	9	Unmodified	_LVDGGQALE_					0	0	0			REV__nc|ENSG00000139908|Q6SA08-3|TSSK4	REV__nc|ENSG00000139908|Q6SA08-3|TSSK4	MULTI-MATCH	A375_MHC_IP_R2	2		1	901.462538	900.455261	-0.64525	-0.00058166	-0.089139	-8.0356E-05	-0.73438	-0.00066202	901.4623820054189	71.267	0.50798	72.001	71.756	72.264	0.73421	-0.0051344	4.2011E-05	NaN	34.102	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6111500	+		34964	27259	25624	25799							0.001052017638585312
LVDGYNVHY	9	Unmodified	_LVDGYNVHY_					0	0	0		nc|ENSG00000162129|Q9H078-5|CLPB;nc|ENSG00000162129|Q9H078-3|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB;ENST00000538021.5_2_11:72004413-72018253:-|nuORF	nc|ENSG00000162129|Q9H078-5|CLPB	nc|ENSG00000162129|Q9H078-5|CLPB	MULTI-MSMS	A375_MHC_IP_R1	1	540.6612548828125	2	540.261456	1078.50836	-0.48048	-0.00025958	-0.95162	-0.00051412	-1.4321	-0.00077371	540.2613188829774	51.65	1.0679	51.65	51.017	52.085	0					29	20	3	0	0	0	0.12592	2	18334	18334;18341		46.021	17.534	1	5345400			34965	6509	25625	25800	34018;34019	34018					-0.027754204534630844
LVDIRVTGPV	10	Unmodified	_LVDIRVTGPV_					0	0	0		ENSG00000173269|ENST00000372027|MMRN2	ENSG00000173269|ENST00000372027|MMRN2	ENSG00000173269|ENST00000372027|MMRN2	MULTI-SECPEP	A375_MHC_IP_R2	2	535.223876953125	2	534.824224	1067.63389	-0.91525	-0.0004895	0.4651	0.00024875	-0.45014	-0.00024075	534.8242620605533	50.741	0.40549	51.495	51.209	51.615	0.75406					15	7	3	0	0	0	0.91556	1	19095	19095		6.2058	0	1	2097900			34966	7782	25626	25801	34020	34020					0.10278291402755713
LVDLRNYQY	9	Unmodified	_LVDLRNYQY_					0	0	0		ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	MULTI-MSMS	A375_MHC_IP_R1	1	592.7097778320312	2	592.308938	1182.60332	-0.63697	-0.00037728	0.24489	0.00014505	-0.39208	-0.00023223	592.3091444335143	67.117	0.51212	67.117	66.887	67.399	0					15	9	2	0	0	0	0.04447	1	24336	24336		66.457	30.33	1	2942200			34967	1158	25627	25802	34021	34021					0.019325130177094252
LVDLRNYQY	9	Unmodified	_LVDLRNYQY_					0	0	0		ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	MULTI-MSMS	A375_MHC_IP_R2	2	592.7083740234375	2	592.308938	1182.60332	-0.69181	-0.00040977	0.06259	3.7073E-05	-0.62922	-0.00037269	592.3090249694895	66.528	0.40948	67.265	67.035	67.445	0.73631					13	7	2	0	0	0	0.066859	1	25200	25200		57.722	21.595	1	3045900			34968	1158	25627	25802	34022	34022					0.019325130177094252
LVDNHHEVY	9	Unmodified	_LVDNHHEVY_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-SECPEP	A375_MHC_IP_R1	1	376.2489013671875	3	375.848967	1124.52507	0.061163	2.2988E-05	-0.040254	-1.5129E-05	0.020909	7.8586E-06	375.84891681163054	23.762	0.50735	23.762	23.635	24.143	0					13	9	3	0	0	0	0.69507	1	6621	6621		13.615	9.4254	1	10574000			34969	9143	25628	25803	34023	34023					-0.03220919567525016
LVDNHHEVY	9	Unmodified	_LVDNHHEVY_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-SECPEP	A375_MHC_IP_R2	2	376.2489318847656	3	375.848967	1124.52507	-0.078372	-2.9456E-05	-0.17984	-6.7593E-05	-0.25821	-9.7049E-05	375.848907179598	23.073	0.3578	23.703	23.47	23.828	0.63015					17	6	4	0	0	0	0.41434	1	7379	7379		30.703	19.186	1	6529700			34970	9143	25628	25803	34024	34024					-0.03220919567525016
LVDPSVYGY	9	Unmodified	_LVDPSVYGY_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MSMS	A375_MHC_IP_R1	1	507.1526184082031	2	506.752933	1011.49131	-0.58179	-0.00029482	0.19204	9.7315E-05	-0.38976	-0.00019751	506.7530138980593	84.508	0.70962	84.508	84.091	84.8	0					25	13	3	0	0	0	0.083809	1	30927	30927		53.576	43.392	1	2839500			34971	2729	25629	25804	34025	34025					-0.01397341059282553
LVDPSVYGY	9	Unmodified	_LVDPSVYGY_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MSMS	A375_MHC_IP_R1	1	1013.2532958984375	1	1012.49859	1011.49131	-0.0078041	-7.9016E-06	-0.10672	-0.00010805	-0.11452	-0.00011595	1012.498369617453	84.475	2.3869	84.475	83.989	86.376	0					123	46	5	0	0	0	0.034481	1	31422	31422		71.134	50.68	1	237070000			34972	2729	25629	25804	34026	34026					-0.01397341059282553
LVDPSVYGY	9	Unmodified	_LVDPSVYGY_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MSMS	A375_MHC_IP_R2	2	1013.8651733398438	1	1012.49859	1011.49131	0.089022	9.0134E-05	-0.015527	-1.5721E-05	0.073494	7.4413E-05	1012.4984548950957	83.845	2.8534	84.585	84.152	87.005	0.73962					128	55	5	0	0	0	0.012712	2	32019	32019;32531		92.822	58.72	1	245700000			34973	2729	25629	25804	34027;34028	34027					-0.01397341059282553
LVDPSVYGY	9	Unmodified	_LVDPSVYGY_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MSMS	A375_MHC_IP_R2	2	506.71319580078125	2	506.752933	1011.49131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.744	1	84.483	83.983	84.983	0.73962								0	0	0	0.037467	1	31832	31832		60.39	42.243	1				34974	2729	25629	25804	34029	34029					-0.01397341059282553
LVDPWTPHLY	10	Unmodified	_LVDPWTPHLY_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-MSMS	A375_MHC_IP_R2	2	621.2224731445312	2	620.821681	1239.62881	-0.65875	-0.00040897	2.0191	0.0012535	1.3604	0.00084455	620.8232004806414	101.84	0.30724	102.6	102.41	102.72	0.76428					7	5	2	0	0	0	0.41205	2	38594	38594;38624		39.957	23.808	1	1380500			34975	976	25630	25805	34030;34031	34030					0.01857987540142858
LVDQEDRNMS	10	Unmodified	_LVDQEDRNMS_					0	0	0			REV__ENST00000578001.1_1_17:27182052-27185217:+|nuORF	REV__ENST00000578001.1_1_17:27182052-27185217:+|nuORF	MSMS	A375_MHC_IP_R1	1	603.7218627929688	2	603.774602	1205.53465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.711	1	73.711	73.211	74.211	0								0	0	0	0.15332	1	26845	26845		10.074	0.6908	1		+		34976	18665	25631	25806	34032	34032					-0.059895193443026074
LVDQPHSLLSI	11	Unmodified	_LVDQPHSLLSI_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	A375_MHC_IP_R1	1	611.7449340820312	2	611.34552	1220.67649	-0.51169	-0.00031282	0.2984	0.00018242	-0.21329	-0.00013039	611.3456101808156	66.245	1.0679	66.245	65.871	66.938	0					46	20	4	0	0	0	0.43152	1	23938	23938		36.506	1.5741	1	14379000			34977	9962	25632	25807	34033	34033					0.0749764174036045
LVDQPHSLLSI	11	Unmodified	_LVDQPHSLLSI_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	A375_MHC_IP_R2	2	611.7449340820312	2	611.34552	1220.67649	-0.64125	-0.00039203	0.10083	6.164E-05	-0.54043	-0.00033039	611.3455263385307	65.452	0.8626	66.19	65.766	66.629	0.73811					47	16	4	0	0	0	0.28899	1	24764	24764		47.594	7.3552	1	12970000			34978	9962	25632	25807	34034	34034					0.0749764174036045
LVDQQTSIY	9	Unmodified	_LVDQQTSIY_					0	0	0			REV__GNAI1|p.P169S|1|0.17|ENSG00000127955|chr7:80203747-80203747|C/T|missense_variant	REV__GNAI1|p.P169S|1|0.17|ENSG00000127955|chr7:80203747-80203747|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	534.1744384765625	2	533.774396	1065.53424	-0.88808	-0.00047403	-3.0119	-0.0016077	-3.9	-0.0020817	534.2725149865969	32.771	0.96501	32.771	32.024	32.989	0					23	17	2	0	0	0	0.13208	1	10589	10589		66.457	0	1	8831200	+		34979	26689	25633	25808	34035	34035					0.004094289981594557
LVDQRVAEY	9	Unmodified	_LVDQRVAEY_					0	0	0		ENSG00000143157|ENST00000367876|POGK	ENSG00000143157|ENST00000367876|POGK	ENSG00000143157|ENST00000367876|POGK	MULTI-MSMS	A375_MHC_IP_R1	1	547.2288818359375	2	546.787838	1091.56112	-0.36524	-0.00019971	0.13089	7.1569E-05	-0.23435	-0.00012814	546.7878345533828	37.478	0.86918	37.478	37.249	38.118	0					35	16	4	0	0	0	0.0095341	2	12672	12619;12672		125.04	55.933	1	27809000			34980	5351	25634	25809	34036;34037	34037					0.019005376093446102
LVDQRVAEY	9	Unmodified	_LVDQRVAEY_					0	0	0		ENSG00000143157|ENST00000367876|POGK	ENSG00000143157|ENST00000367876|POGK	ENSG00000143157|ENST00000367876|POGK	MULTI-SECPEP	A375_MHC_IP_R2	2	547.1876220703125	2	546.787838	1091.56112	-1.3186	-0.00072098	0.47017	0.00025709	-0.84841	-0.0004639	546.7880451732927	36.789	0.50803	37.56	37.308	37.816	0.7709					28	9	4	0	0	0	0.011031	1	13398	13398		128.93	57.01	1	25898000			34981	5351	25634	25809	34038	34038					0.019005376093446102
LVDRESRSRTL	11	Unmodified	_LVDRESRSRTL_					0	0	0			REV__ENSG00000187714|ENST00000374115|SLC18A3	REV__ENSG00000187714|ENST00000374115|SLC18A3	MULTI-MSMS	A375_MHC_IP_R2	2	444.98455810546875	3	444.584513	1330.73171	-0.38261	-0.0001701	0.020191	8.9765E-06	-0.36242	-0.00016113	444.5844613046506	130.62	1.2175	130.83	130.1	131.31	0.2142					41	23	2	0	0	0	0.73378	1	51313	51313		2.4348	0	1	12369000	+		34982	22040	25635	25810	34039	34039					0.07957448260822275
LVDRVYQL	8	Unmodified	_LVDRVYQL_					0	0	0			REV__nc|ENSG00000136709|Q9C0J8-2|WDR33	REV__nc|ENSG00000136709|Q9C0J8-2|WDR33	MULTI-MSMS	A375_MHC_IP_R1	1	503.69012451171875	2	503.290017	1004.56548	-0.47496	-0.00023904	0.16164	8.135E-05	-0.31332	-0.00015769	503.2901569106538	68.523	0.81043	68.523	68.26	69.07	0					37	15	4	0	0	0	0.74945	1	24915	24915		20.454	1.0146	1	13477000	+		34983	27244	25636	25811	34040	34040					0.06338046822895649
LVDYLPETI	9	Unmodified	_LVDYLPETI_					0	0	0		ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MULTI-SECPEP	A375_MHC_IP_R2	2	532.1696166992188	2	531.789515	1061.56448	-0.85282	-0.00045352	-3.5929	-0.0019106	-4.4457	-0.0023642	531.7857765499481	35.743	0.20357	36.507	36.384	36.587	0.76338					5	3	2	0	0	0	0.52144	1	12987	12987		16.942	0	1	351130			34984	1572	25637	25812	34041	34041					0.03615787663329684
LVEALDVN	8	Unmodified	_LVEALDVN_					0	0	0		BBOX1|p.L53F|1|0.1|ENSG00000129151|chr11:27055587-27055587|C/T|missense_variant;ENST00000527505.1_1_11:27076962-27137060:+|nuORF;ENSG00000129151|ENST00000263182|BBOX1	BBOX1|p.L53F|1|0.1|ENSG00000129151|chr11:27055587-27055587|C/T|missense_variant	BBOX1|p.L53F|1|0.1|ENSG00000129151|chr11:27055587-27055587|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	436.6657409667969	2	436.739825	871.465098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.63	1	40.405	39.905	40.905	0.77451								0	0	0	0.16876	1	14640	14640		18.135	1.0484	1				34985	226	25638	25813	34042	34042					0.024223897692422725
LVEEDYPDSY	10	Unmodified	_LVEEDYPDSY_					0	0	0		nc|ENSG00000283228|O00305-4|CACNB4;nc|ENSG00000283228|O00305-2|CACNB4;nc|ENSG00000283228|O00305-3|CACNB4;ENSG00000182389|ENST00000539935|CACNB4	nc|ENSG00000283228|O00305-4|CACNB4	nc|ENSG00000283228|O00305-4|CACNB4	MULTI-MSMS	A375_MHC_IP_R1	1	615.6637573242188	2	615.264059	1228.51356	-0.27583	-0.00016971	-0.026868	-1.6531E-05	-0.3027	-0.00018624	615.2639440885275	33.731	0.45386	33.731	33.547	34.001	0					18	8	3	0	0	0	0.53946	1	11069	11069		25.399	0	1	4477500			34986	8405	25639	25814	34043	34043					-0.09155206172181352
LVEEDYPDSY	10	Unmodified	_LVEEDYPDSY_					0	0	0		nc|ENSG00000283228|O00305-4|CACNB4;nc|ENSG00000283228|O00305-2|CACNB4;nc|ENSG00000283228|O00305-3|CACNB4;ENSG00000182389|ENST00000539935|CACNB4	nc|ENSG00000283228|O00305-4|CACNB4	nc|ENSG00000283228|O00305-4|CACNB4	MULTI-MSMS	A375_MHC_IP_R2	2	615.6637573242188	2	615.264059	1228.51356	-0.78033	-0.00048011	0.15683	9.6491E-05	-0.6235	-0.00038362	615.2640535304499	33.137	0.4593	33.889	33.635	34.095	0.75225					18	8	3	0	0	0	0.43117	1	11871	11871		32.305	6.9062	1	2934300			34987	8405	25639	25814	34044	34044					-0.09155206172181352
LVEEDYPDSY	10	Unmodified	_LVEEDYPDSY_					0	0	0		nc|ENSG00000283228|O00305-4|CACNB4;nc|ENSG00000283228|O00305-2|CACNB4;nc|ENSG00000283228|O00305-3|CACNB4;ENSG00000182389|ENST00000539935|CACNB4	nc|ENSG00000283228|O00305-4|CACNB4	nc|ENSG00000283228|O00305-4|CACNB4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	615.264059	1228.51356	-0.27583	-0.00016971	-0.026868	-1.6531E-05	-0.3027	-0.00018624	615.2639440885275	33.731	0.45386	33.731	33.547	34.001	0	-0.079054	-8.3779E-05	NaN	32.305	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4477500			34988	8405	25639	25814							-0.09155206172181352
LVEEDYPDSY	10	Unmodified	_LVEEDYPDSY_					0	0	0		nc|ENSG00000283228|O00305-4|CACNB4;nc|ENSG00000283228|O00305-2|CACNB4;nc|ENSG00000283228|O00305-3|CACNB4;ENSG00000182389|ENST00000539935|CACNB4	nc|ENSG00000283228|O00305-4|CACNB4	nc|ENSG00000283228|O00305-4|CACNB4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	615.264059	1228.51356	-0.78033	-0.00048011	0.15683	9.6491E-05	-0.6235	-0.00038362	615.2640535304499	33.137	0.4593	33.889	33.635	34.095	0.75225	0.079054	0.00014226	NaN	32.305	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2934300			34989	8405	25639	25814							-0.09155206172181352
LVEFLATGGV	10	Unmodified	_LVEFLATGGV_					0	0	0		PKD2|p.P446L|1|0.46|ENSG00000118762|chr4:88046659-88046659|C/T|missense_variant	PKD2|p.P446L|1|0.46|ENSG00000118762|chr4:88046659-88046659|C/T|missense_variant	PKD2|p.P446L|1|0.46|ENSG00000118762|chr4:88046659-88046659|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	502.6952819824219	2	503.2844	1004.55425	-0.58437	-0.00029411	1.8321	0.00092207	1.2477	0.00062796	503.28513678934064	129.76	0.25197	129.76	129.65	129.9	0					6	4	2	0	0	0	0.43292	1	49945	49945		48.346	3.9388	1	4634200			34990	15186	25640	25815	34045	34045					0.05215224728760859
LVEKKQLRA	9	Unmodified	_LVEKKQLRA_					0	0	0			REV__nc|ENSG00000104221|Q9HAW0-2|BRF2	REV__nc|ENSG00000104221|Q9HAW0-2|BRF2	MULTI-MSMS	A375_MHC_IP_R1	1	362.6327209472656	3	362.232752	1083.67643	0.16511	5.9807E-05	-0.44234	-0.00016023	-0.27723	-0.00010042	362.2326119247678	46.355	0.75731	46.355	45.89	46.647	0					22	14	3	0	0	0	0.65748	1	16222	16222		10.8	0.64894	1	7223700	+		34991	17308	25641	25816	34046	34046					0.1379368653099391
LVEKLDVKK	9	Unmodified	_LVEKLDVKK_					0	0	0		nc|ENSG00000073712|Q96AC1-2|FERMT2;ENSG00000073712|ENST00000341590|FERMT2;nc|ENSG00000073712|Q96AC1-3|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	MULTI-MSMS	A375_MHC_IP_R2	2	358.2400817871094	3	357.897258	1070.66995	-0.54657	-0.00019562	0.060806	2.1762E-05	-0.48577	-0.00017385	357.8972451800094	21.741	2.6457	22.361	20.66	23.306	0.61932					121	51	5	0	0	0	0.68382	1	6332	6332		8.4443	0	1	65488000			34992	1568	25642	25817	34047	34047					0.13743748579599924
LVEKSQLGY	9	Unmodified	_LVEKSQLGY_					0	0	0		ENSG00000149289|ENST00000278590|ZC3H12C;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C	ENSG00000149289|ENST00000278590|ZC3H12C	ENSG00000149289|ENST00000278590|ZC3H12C	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1869506835938	2	518.787307	1035.56006	-0.58953	-0.00030584	0.2284	0.00011849	-0.36113	-0.00018735	518.7872481791118	36.241	0.50647	36.241	35.932	36.439	0					15	9	2	0	0	0	0.61452	1	12123	12123		26.268	4.5215	1	1835600			34993	5797	25643	25818	34048	34048					0.04370323240414109
LVELDTHI	8	Unmodified	_LVELDTHI_					0	0	0		nc|ENSG00000166343|Q4VC12-2|MSS51;ENSG00000166343|ENST00000299432|MSS51	nc|ENSG00000166343|Q4VC12-2|MSS51	nc|ENSG00000166343|Q4VC12-2|MSS51	MULTI-MSMS	A375_MHC_IP_R1	1	470.6607971191406	2	470.260925	938.507297	-0.18679	-8.7841E-05	-0.097251	-4.5733E-05	-0.28404	-0.00013357	470.26087815506065	45.677	0.50896	45.677	45.534	46.043	0					14	9	2	0	0	0	0.6817	1	16037	16037		40.449	6.2612	1	2122200			34994	7063	25644	25819	34049	34049					0.035583651776164515
LVEPDDHHL	9	Unmodified	_LVEPDDHHL_					0	0	0			REV__ENSG00000182481|ENST00000330459|KPNA2	REV__ENSG00000182481|ENST00000330459|KPNA2	MULTI-MSMS	A375_MHC_IP_R1	1	537.7083129882812	2	537.764363	1073.51417	-0.66274	-0.0003564	0.45949	0.0002471	-0.20325	-0.0001093	537.7644756895888	59.581	0.71101	59.581	59.194	59.905	0					19	13	2	0	0	0	0.67372	1	21325	21325		9.3474	1.4373	1	1347100	+		34995	21693	25645	25820	34050	34050					-0.019643219418185254
LVEPDDHHL	9	Unmodified	_LVEPDDHHL_					0	0	0			REV__ENSG00000182481|ENST00000330459|KPNA2	REV__ENSG00000182481|ENST00000330459|KPNA2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	537.764363	1073.51417	-0.66274	-0.0003564	0.45949	0.0002471	-0.20325	-0.0001093	537.7644756895888	59.581	0.71101	59.581	59.194	59.905	0	0.051491	-0.00032336	NaN	9.3474	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1347100	+		34996	21693	25645	25820							-0.019643219418185254
LVEPRDFEV	9	Unmodified	_LVEPRDFEV_					0	0	0			REV__nc|ENSG00000121270|Q96J66-2|ABCC11	REV__nc|ENSG00000121270|Q96J66-2|ABCC11	MULTI-SECPEP	A375_MHC_IP_R1	1	552.6902465820312	2	552.290214	1102.56587	-0.53126	-0.00029341	-0.14298	-7.8968E-05	-0.67425	-0.00037238	552.2901757416555	61.73	0.61366	61.73	61.432	62.046	0					26	11	3	0	0	0	0.096726	1	22275	22275		71.134	12.455	1	4785400	+		34997	18153	25646	25821	34051	34051					0.018694217520987877
LVEPRDFEV	9	Unmodified	_LVEPRDFEV_					0	0	0			REV__nc|ENSG00000121270|Q96J66-2|ABCC11	REV__nc|ENSG00000121270|Q96J66-2|ABCC11	MULTI-SECPEP	A375_MHC_IP_R2	2	552.644775390625	2	552.290214	1102.56587	-1.0812	-0.00059713	-0.22613	-0.00012489	-1.3073	-0.00072202	552.2901127150789	60.948	0.50533	61.693	61.414	61.919	0.74503					17	9	2	0	0	0	0.05755	1	23040	23040		81.613	13.532	1	5789200	+		34998	18153	25646	25821	34052	34052					0.018694217520987877
LVEQERLGI	9	Unmodified	_LVEQERLGI_					0	0	0		ENST00000444201.6_1_9:79074160-79115902:+|nuORF	ENST00000444201.6_1_9:79074160-79115902:+|nuORF	ENST00000444201.6_1_9:79074160-79115902:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	529.2053833007812	2	528.806031	1055.59751	-0.47727	-0.00025238	-0.039018	-2.0633E-05	-0.51628	-0.00027301	528.8057448853081	89.202	0.6078	89.202	88.97	89.577	0					25	11	3	0	0	0	0.50702	1	32747	32747		32.305	9.5692	1	3741000			34999	12015	25647	25822	34053	34053					0.07193414506036788
LVERFFRLRKE	11	Unmodified	_LVERFFRLRKE_					0	0	0			REV__nc|ENSG00000100266|Q9UNF0-2|PACSIN2	REV__nc|ENSG00000100266|Q9UNF0-2|PACSIN2	MSMS	A375_MHC_IP_R1	1	746.8515014648438	2	746.940985	1491.86742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.6	1	115.6	115.1	116.1	0								0	0	0	0.16265	1	42395	42395		4.897	3.7037	1		+		35000	17066	25648	25823	34054	34054					0.1411576784225872
LVEYDEARS	9	Unmodified	_LVEYDEARS_					0	0	0			REV__nc|ENSG00000117650|P51955-3|NEK2	REV__nc|ENSG00000117650|P51955-3|NEK2	MSMS	A375_MHC_IP_R2	2	541.213623046875	2	541.261653	1080.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.83	1	135.94	135.44	136.44	0.11134								0	0	0	0.15486	1	53377	53377		7.2892	0	1		+		35001	18018	25649	25824	34055	34055					-0.028280455243020697
LVFFERRT	8	Unmodified	_LVFFERRT_					0	0	0		ENST00000511906.5_1_5:37379391-37721408:+|nuORF;ENSG00000082068|ENST00000265107|WDR70	ENST00000511906.5_1_5:37379391-37721408:+|nuORF	ENST00000511906.5_1_5:37379391-37721408:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	533.7020263671875	2	534.303458	1066.59236	-0.93117	-0.00049753	3.0959	0.0016541	2.1647	0.0011566	534.3048735968443	133.69	0.255	133.69	133.51	133.76	0					6	4	2	0	0	0	0.91495	1	51576	51576		24.674	15.326	1	2192200			35002	1752	25650	25825	34056	34056					0.061731554340894945
LVFGEDHPE	9	Unmodified	_LVFGEDHPE_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000574210.5_1_17:2594901-2597328:-|nuORF;ENST00000572014.1_1_17:2595653-2597426:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MSMS	A375_MHC_IP_R1	1	521.6905517578125	2	521.745639	1041.47673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.865	1	88.865	88.365	89.365	0								0	0	0	0.15486	1	32636	32636		4.756	0	1				35003	4399	25651	25826	34057	34057					-0.04235413207447891
LVFLHMRFRKR	11	Unmodified	_LVFLHMRFRKR_					0	0	0			REV__AVPR1B|p.S67F|1|0.11|ENSG00000198049|chr1:206116691-206116691|G/A|missense_variant	REV__AVPR1B|p.S67F|1|0.11|ENSG00000198049|chr1:206116691-206116691|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	502.0341796875	3	501.634485	1501.88163	-0.73192	-0.00036716	-0.18824	-9.4426E-05	-0.92016	-0.00046158	501.63432898147096	141.62	2.2013	141.62	140.18	142.38	0					57	42	2	0	0	0	0.73924	1	54336	54336		0.094841	0.094841	1	815630	+		35004	15490	25652	25827	34058	34058					0.15076141789540998
LVFLHMRFRKR	11	Unmodified	_LVFLHMRFRKR_					0	0	0			REV__AVPR1B|p.S67F|1|0.11|ENSG00000198049|chr1:206116691-206116691|G/A|missense_variant	REV__AVPR1B|p.S67F|1|0.11|ENSG00000198049|chr1:206116691-206116691|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	502.0335693359375	3	501.634485	1501.88163	-0.73192	-0.00036716	-0.18824	-9.4426E-05	-0.92016	-0.00046158	501.63432898147096	141.62	2.2013	141.62	140.18	142.38	0					57	42	2	0	0	0	1.0014	1	54404	54404		0.094841	0	1	815630	+		35005	15490	25652	25827	34059	34059					0.15076141789540998
LVFLHMRFRKR	11	Unmodified	_LVFLHMRFRKR_					0	0	0			REV__AVPR1B|p.S67F|1|0.11|ENSG00000198049|chr1:206116691-206116691|G/A|missense_variant	REV__AVPR1B|p.S67F|1|0.11|ENSG00000198049|chr1:206116691-206116691|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	502.0343933105469	3	501.634485	1501.88163	-0.41566	-0.00020851	-0.15103	-7.5761E-05	-0.56669	-0.00028427	501.6344717221427	139.37	1.2035	139.43	138.7	139.9	0.059906					32	23	2	0	0	0	0.73924	1	54617	54617		0.094841	0.094841	1	2056700	+		35006	15490	25652	25827	34060	34060					0.15076141789540998
LVFLHMRFRKR	11	Unmodified	_LVFLHMRFRKR_					0	0	0			REV__AVPR1B|p.S67F|1|0.11|ENSG00000198049|chr1:206116691-206116691|G/A|missense_variant	REV__AVPR1B|p.S67F|1|0.11|ENSG00000198049|chr1:206116691-206116691|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	502.0342102050781	3	501.634485	1501.88163	-0.41352	-0.00020744	-0.18975	-9.5184E-05	-0.60327	-0.00030262	501.6343398861235	141.86	1.6375	141.89	140.74	142.38	0.030731					42	31	2	0	0	0	0.73881	1	55392	55392		0.50596	0.50596	1	1286600	+		35007	15490	25652	25827	34061	34061					0.15076141789540998
LVFLLIVLLM	10	Unmodified	_LVFLLIVLLM_					0	0	0			REV__ENSG00000122375|ENST00000241891|OPN4	REV__ENSG00000122375|ENST00000241891|OPN4	MULTI-MSMS	A375_MHC_IP_R2	2	587.7866821289062	2	587.387614	1172.76067	-0.3769	-0.00022139	-0.036021	-2.1158E-05	-0.41292	-0.00024254	587.3874390616063	149.72	1.5766	149.74	148.44	150.01	0.01825					183	59	4	0	0	0	0.72645	1	57878	57878		0.45834	0	1	670840	+		35008	18199	25653	25828	34062	34062					0.18120501303519632
LVFLLIVLLM	10	Unmodified	_LVFLLIVLLM_					0	0	0			REV__ENSG00000122375|ENST00000241891|OPN4	REV__ENSG00000122375|ENST00000241891|OPN4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	587.387614	1172.76067	-0.63588	-0.00037351	-0.033032	-1.9402E-05	-0.66892	-0.00039291	587.3874612891794	149.69	1.7899	149.69	148.21	150	0	-0.024508	2.2682E-06	NaN	0.45834	164	58	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	733580	+		35009	18199	25653	25828							0.18120501303519632
LVFPNGVERKD	11	Unmodified	_LVFPNGVERKD_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R2	2	637.819580078125	2	637.348594	1272.68264	-0.77556	-0.0004943	-0.39819	-0.00025379	-1.1738	-0.00074809	637.3467541510945	130.95	0.76376	131.17	130.86	131.62	0.2142					22	14	2	0	0	0	0.73378	1	51402	51402		5.2969	0.39987	1	5041900			35010	6151;14694	25654	25829	34063	34063					0.05720159971838257
LVFVFFWWRWG	11	Unmodified	_LVFVFFWWRWG_					0	0	0		SVA_E_dup408|chr10:31969059-31970051:+|2.313722725691701|0.275459818795955|3.07|456.0|17|3|sense	SVA_E_dup408|chr10:31969059-31970051:+|2.313722725691701|0.275459818795955|3.07|456.0|17|3|sense	SVA_E_dup408|chr10:31969059-31970051:+|2.313722725691701|0.275459818795955|3.07|456.0|17|3|sense	MULTI-MSMS	A375_MHC_IP_R1	1	772.8079833984375	2	771.905882	1541.79721	-0.26046	-0.00020105	1.0429	0.00080499	0.7824	0.00060394	772.4082673477982	109.5	0.45939	109.5	109.27	109.73	0					18	8	3	0	0	0	0.73779	1	40165	40165		1.4819	0.15237	1	2930900			35011	29274	25655	25830	34064	34064					0.047985142444304074
LVFVFFWWRWG	11	Unmodified	_LVFVFFWWRWG_					0	0	0		SVA_E_dup408|chr10:31969059-31970051:+|2.313722725691701|0.275459818795955|3.07|456.0|17|3|sense	SVA_E_dup408|chr10:31969059-31970051:+|2.313722725691701|0.275459818795955|3.07|456.0|17|3|sense	SVA_E_dup408|chr10:31969059-31970051:+|2.313722725691701|0.275459818795955|3.07|456.0|17|3|sense	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	771.905882	1541.79721	-0.89882	-0.0006938	2.109	0.001628	1.2102	0.00093417	771.90742420677	108.56	0.45707	109.31	109.11	109.57	0.74684	-0.09841	0.0012142	NaN	1.4819	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2696200			35012	29274	25655	25830							0.047985142444304074
LVFWTRGL	8	Unmodified	_LVFWTRGL_					0	0	0			REV__ENST00000330539.1_1_8:37593400-37593877:-|nuORF	REV__ENST00000330539.1_1_8:37593400-37593877:-|nuORF	MSMS	A375_MHC_IP_R2	2	496.2482604980469	2	496.28982	990.565087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.04	1	103.81	103.31	104.31	0.76428								0	0	0	0.16876	1	39029	39029		11.114	0.93107	1		+		35013	23620	25656	25831	34065	34065					0.0694267189370521
LVGAPRAEAL	10	Unmodified	_LVGAPRAEAL_					0	0	0		nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;ITGA6|p.F99Lfs*31|1|0.34|ENSG00000091409|chr2:172465651-172465651|T/-|frameshift_variant	nc|ENSG00000091409|P23229-4|ITGA6	nc|ENSG00000091409|P23229-4|ITGA6	MULTI-SECPEP	A375_MHC_IP_R2	2	499.4601135253906	2	498.795466	995.57638	-0.70915	-0.00035372	0.052322	2.6098E-05	-0.65683	-0.00032762	498.79571791528537	51.384	0.45654	52.136	51.864	52.321	0.75225					14	8	2	0	0	0	0.91909	1	19405	19405		9.3831	0	1	1153600			35014	14499	25657	25832	34066	34066					0.07841449197167094
LVGGKNIV	8	Unmodified	_LVGGKNIV_					0	0	0		nc|ENSG00000101350|O15066-2|KIF3B;ENSG00000101350|ENST00000375712|KIF3B	nc|ENSG00000101350|O15066-2|KIF3B	nc|ENSG00000101350|O15066-2|KIF3B	MULTI-MSMS	A375_MHC_IP_R1	1	400.655517578125	2	400.255446	798.496338	-0.27096	-0.00010845	0.57673	0.00023084	0.30577	0.00012239	400.25552808927836	64.03	0.60754	64.03	63.735	64.343	0					16	11	2	0	0	0	0.7338	1	23162	23162		24.674	1.5255	1	1916400			35015	2284	25658	25833	34067	34067					0.08903007593994516
LVGGKNIV	8	Unmodified	_LVGGKNIV_					0	0	0		nc|ENSG00000101350|O15066-2|KIF3B;ENSG00000101350|ENST00000375712|KIF3B	nc|ENSG00000101350|O15066-2|KIF3B	nc|ENSG00000101350|O15066-2|KIF3B	MULTI-MSMS	A375_MHC_IP_R2	2	400.65545654296875	2	400.255446	798.496338	-0.004126	-1.6515E-06	0.18716	7.4913E-05	0.18304	7.3261E-05	400.2554671754013	62.917	0.45428	63.659	63.484	63.938	0.74263					14	8	2	0	0	0	0.77515	1	23877	23877		12.532	0.89125	1	2985300			35016	2284	25658	25833	34068	34068					0.08903007593994516
LVGIILVLFKK	11	Unmodified	_LVGIILVLFKK_					0	0	0			REV__tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	REV__tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	MSMS	A375_MHC_IP_R1	1	621.931884765625	2	621.931035	1241.84752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.27	1	123.27	122.77	123.77	0								0	0	0	0.16297	1	46039	46039		3.2813	0	1		+		35017	28801	25659	25834	34069	34069					0.236266238495773
LVGKFFLPAPS	11	Unmodified	_LVGKFFLPAPS_					0	0	0			REV__ENST00000477157.5_1_22:17618913-17622310:-|nuORF	REV__ENST00000477157.5_1_22:17618913-17622310:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	392.9653625488281	3	392.56562	1174.67503	-0.0063493	-2.4925E-06	0.050579	1.9856E-05	0.04423	1.7363E-05	392.56549646158453	24.682	0.75739	24.682	24.245	25.002	0					26	14	2	0	0	0	0.7328	1	6964	6964		6.2344	6.2344	1	5861100	+		35018	25196	25660	25835	34070	34070					0.09468052442207409
LVGLGGGW	8	Unmodified	_LVGLGGGW_					0	0	0		ENST00000257915.9_1_12:51566268-51566466:-|nuORF	ENST00000257915.9_1_12:51566268-51566466:-|nuORF	ENST00000257915.9_1_12:51566268-51566466:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	380.1134033203125	2	379.713414	757.412274	-0.14425	-5.4772E-05	0.87634	0.00033276	0.7321	0.00027799	379.71358557062706	65.967	0.66499	66.706	66.526	67.191	0.73811					18	12	2	0	0	0	0.972	1	25010	25010		6.3541	3.4649	1	1930700			35019	10253	25661	25836	34071	34071					0.023864764970994656
LVGLGGGW	8	Unmodified	_LVGLGGGW_					0	0	0		ENST00000257915.9_1_12:51566268-51566466:-|nuORF	ENST00000257915.9_1_12:51566268-51566466:-|nuORF	ENST00000257915.9_1_12:51566268-51566466:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	379.713414	757.412274	0.070851	2.6903E-05	0.9657	0.00036669	1.0366	0.00039359	379.7136784427196	67.035	0.56277	67.035	66.734	67.297	0	0.16467	2.286E-05	NaN	6.3541	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1773100			35020	10253	25661	25836							0.023864764970994656
LVGMGRWTSI	10	Unmodified	_LVGMGRWTSI_					0	0	0		ENST00000423538.6_1_1:156182331-156182481:+|nuORF	ENST00000423538.6_1_1:156182331-156182481:+|nuORF	ENST00000423538.6_1_1:156182331-156182481:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	560.7296752929688	2	560.302601	1118.59065	-0.37685	-0.00021115	-0.62592	-0.00035071	-1.0028	-0.00056185	560.8036554177838	72.651	0.45741	72.651	72.423	72.88	0					11	8	2	0	0	0	0.77204	1	26351	26351		21.537	7.6309	1	1270200			35021	11759	25662	25837	34072	34072					0.03609778353825277
LVGPTRDR	8	Unmodified	_LVGPTRDR_					0	0	0			REV__ENST00000462742.1_1_21:45751724-45754149:-|nuORF	REV__ENST00000462742.1_1_21:45751724-45754149:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	913.9203491210938	1	913.52139	912.514114	-0.17003	-0.00015533	-0.47199	-0.00043117	-0.64202	-0.0005865	913.5208083345161	149.7	1.006	149.72	149.01	150.01	0.01825					89	47	2	0	0	0	0.77839	1	58072	58072		0.79363	0	1	131090	+		35022	24995	25663	25838	34073	34073					0.054357228488470355
LVGPTRDR	8	Unmodified	_LVGPTRDR_					0	0	0			REV__ENST00000462742.1_1_21:45751724-45754149:-|nuORF	REV__ENST00000462742.1_1_21:45751724-45754149:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	913.52139	912.514114	-0.47289	-0.000432	-0.29116	-0.00026598	-0.76405	-0.00069798	913.5207974239443	149.65	1.3974	149.65	148.61	150	0	-0.032335	8.4411E-05	NaN	0.79363	88	50	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153130	+		35023	24995	25663	25838							0.054357228488470355
LVGPTRDR	8	Unmodified	_LVGPTRDR_					0	0	0			REV__ENST00000462742.1_1_21:45751724-45754149:-|nuORF	REV__ENST00000462742.1_1_21:45751724-45754149:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	913.52139	912.514114	-0.17003	-0.00015533	-0.47199	-0.00043117	-0.64202	-0.0005865	913.5208083345161	149.7	1.006	149.72	149.01	150.01	0.01825	0.032335	-8.0786E-05	NaN	0.79363	89	47	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131090	+		35024	24995	25663	25838							0.054357228488470355
LVGSFRPEPV	10	Unmodified	_LVGSFRPEPV_					0	0	0			REV__ENST00000590887.5_1_19:797434-804304:+|nuORF	REV__ENST00000590887.5_1_19:797434-804304:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2083129882812	2	550.808574	1099.60259	-0.48484	-0.00026705	0.021939	1.2084E-05	-0.4629	-0.00025497	550.8082690487017	72.96	0.71089	72.96	72.625	73.336	0					28	13	4	0	0	0	0.92389	1	26561	26561		7.2892	5.8073	1	2840000	+		35025	26441	25664	25839	34074	34074					0.05677718368656315
LVGWGGLG	8	Unmodified	_LVGWGGLG_					0	0	0		nc|ENSG00000106948|Q7Z591-6|AKNA	nc|ENSG00000106948|Q7Z591-6|AKNA	nc|ENSG00000106948|Q7Z591-6|AKNA	MULTI-SECPEP	A375_MHC_IP_R1	1	380.11370849609375	2	379.713414	757.412274	0.17863	6.7828E-05	0.5329	0.00020235	0.71153	0.00027018	379.7136052004264	91.174	0.40466	91.174	90.997	91.401	0					11	7	2	0	0	0	0.972	1	33527	33527		2.8892	0	1	1387800			35026	14530	25665	25840	34075	34075					0.023864764971108343
LVGWTLYSV	9	Unmodified	_LVGWTLYSV_					0	0	0			REV__nc|ENSG00000157593|Q8TB61-4|SLC35B2	REV__nc|ENSG00000157593|Q8TB61-4|SLC35B2	MULTI-SECPEP	A375_MHC_IP_R1	1	519.9859619140625	2	519.286943	1036.55933	-0.90359	-0.00046922	0.040524	2.1044E-05	-0.86307	-0.00044818	519.2872429838806	67.852	0.65863	67.852	67.5	68.159	0					27	12	4	0	0	0	0.75466	1	24697	24697		4.3292	0	1	3408500	+		35027	20035	25666	25841	34076	34076					0.042515285913850676
LVGYKNLVY	9	Unmodified	_LVGYKNLVY_					0	0	0		nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13;ENSG00000177054|ENST00000446113|ZDHHC13;ENST00000525490.5_1_11:19138758-19188042:+|nuORF	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	MULTI-SECPEP	A375_MHC_IP_R1	1	534.1796264648438	2	534.808042	1067.60153	-0.74915	-0.00040065	-0.0079893	-4.2727E-06	-0.75714	-0.00040492	534.80809997081	58.861	0.86434	58.861	58.228	59.092	0					23	16	2	0	0	0	0.73008	1	21155	21155		18.135	18.135	1	2413200			35028	8060	25667	25842	34077	34077					0.07043503999739187
LVHCCFPSI	9	Unmodified	_LVHCCFPSI_					0	0	0		ENST00000415095.5_2_2:110303401-110303572:-|nuORF	ENST00000415095.5_2_2:110303401-110303572:-|nuORF	ENST00000415095.5_2_2:110303401-110303572:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	510.14715576171875	2	509.746073	1017.47759	-0.58193	-0.00029664	0.51664	0.00026336	-0.065293	-3.3283E-05	509.7463264593377	91.174	1.4161	91.174	90.845	92.261	0					53	27	3	0	0	0	0.63811	1	33786	33786		12.532	1.4171	1	11041000			35029	11674	25668	25843	34078	34078					-0.030446133637269668
LVHCCFPSI	9	Unmodified	_LVHCCFPSI_					0	0	0		ENST00000415095.5_2_2:110303401-110303572:-|nuORF	ENST00000415095.5_2_2:110303401-110303572:-|nuORF	ENST00000415095.5_2_2:110303401-110303572:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	510.1458740234375	2	509.746073	1017.47759	-0.64227	-0.00032739	0.62137	0.00031674	-0.020894	-1.0651E-05	509.74635780147935	90.552	1.4204	91.286	90.904	92.325	0.7345					59	27	4	0	0	0	0.47368	1	34421	34421		20.454	0	1	18224000			35030	11674	25668	25843	34079	34079					-0.030446133637269668
LVHCLSCSWEE	11	Unmodified	_LVHCLSCSWEE_					0	0	0			REV__ENST00000595974.5_1_19:59060841-59061245:+|nuORF	REV__ENST00000595974.5_1_19:59060841-59061245:+|nuORF	MSMS	A375_MHC_IP_R1	1	653.2858276367188	2	653.283748	1304.55294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.65	1	119.65	119.15	120.15	0								0	0	0	0.1624	1	44247	44247		6.2058	0.9089	1		+		35031	18560	25669	25844	34080	34080					-0.08715100693939348
LVHDPEFDR	9	Unmodified	_LVHDPEFDR_					0	0	0		nc|ENSG00000112200|Q9Y4E5-4|ZNF451	nc|ENSG00000112200|Q9Y4E5-4|ZNF451	nc|ENSG00000112200|Q9Y4E5-4|ZNF451	MULTI-SECPEP	A375_MHC_IP_R2	2	377.25518798828125	3	376.520851	1126.54072	0.15733	5.9239E-05	-0.19528	-7.3528E-05	-0.037948	-1.4288E-05	376.52077656809917	45.24	0.55817	46.005	45.694	46.252	0.76519					21	10	3	0	0	0	0.73926	1	16927	16927		17.443	5.202	1	2869900			35032	14548	25670	25845	34081	34081					-0.017486330504880243
LVHDYHTL	8	Unmodified	_LVHDYHTL_					0	0	0			REV__ENSG00000076003|ENST00000264156|MCM6	REV__ENSG00000076003|ENST00000264156|MCM6	MULTI-SECPEP	A375_MHC_IP_R1	1	499.6749267578125	2	499.258717	996.50288	-0.51199	-0.00025562	-2.183	-0.0010899	-2.695	-0.0013455	499.25665308216605	68.624	0.60967	68.624	68.209	68.819	0					18	11	2	0	0	0	0.93416	1	24736	24736		9.3474	0.75416	1	865110	+		35033	16668	25671	25846	34082	34082					0.004489007547249457
LVHDYHTL	8	Unmodified	_LVHDYHTL_					0	0	0			REV__ENSG00000076003|ENST00000264156|MCM6	REV__ENSG00000076003|ENST00000264156|MCM6	MULTI-MATCH	A375_MHC_IP_R2	2		2	499.258717	996.50288	-0.4922	-0.00024574	-2.1617	-0.0010792	-2.6539	-0.001325	499.2572137529732	67.837	0.45743	68.572	68.204	68.662	0.73511	-0.025816	7.8623E-06	NaN	9.3474	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	758680	+		35034	16668	25671	25846							0.004489007547249457
LVHFPFRNSFY	11	Unmodified	_LVHFPFRNSFY_					0	0	0			REV__ENST00000352732.9_1_15:89740436-89740625:+|nuORF	REV__ENST00000352732.9_1_15:89740436-89740625:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	476.6403503417969	3	476.247062	1425.71936	-0.4885	-0.00023265	0.42174	0.00020085	-0.06676	-3.1794E-05	476.58131108513084	132.38	0.71335	132.57	132.1	132.82	0.18953					27	13	3	0	0	0	0.73795	1	52119	52119		0.45452	0.046251	1	1943900	+		35035	23802	25672	25847	34083	34083					0.02352456588437235
LVHIFLLIL	9	Unmodified	_LVHIFLLIL_					0	0	0		ENSG00000154767|ENST00000285021|XPC;nc|ENSG00000154767|Q01831-2|XPC	ENSG00000154767|ENST00000285021|XPC	ENSG00000154767|ENST00000285021|XPC	MSMS	A375_MHC_IP_R2	2	360.9691162109375	3	360.910839	1079.71069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.335	1	30.033	29.533	30.533	0.69872								0	0	0	0.15486	1	10234	10234		5.7319	0	1				35036	6107	25673	25848	34084	34084					0.17402134689905324
LVHLFEDAY	9	Unmodified	_LVHLFEDAY_					0	0	0		ENST00000472719.5_1_2:27008929-27016144:+|nuORF;nc|ENSG00000115163|P49450-2|CENPA;ENST00000419525.5_1_2:27015485-27016144:+|nuORF;ENST00000475662.5_1_2:26987167-27016144:+|nuORF;ENSG00000115163|ENST00000335756|CENPA	ENST00000472719.5_1_2:27008929-27016144:+|nuORF	ENST00000472719.5_1_2:27008929-27016144:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	554.377197265625	2	553.779482	1105.54441	-0.37277	-0.00020643	-2.178	-0.0012061	-2.5508	-0.0014126	553.7784601403265	37.479	0.25526	37.479	37.351	37.607	0					7	4	2	0	0	0	0.65246	1	12612	12612		15.847	2.8047	1	1840700			35037	3276	25674	25849	34085	34085					-0.004139632766282375
LVHLKDVSI	9	Unmodified	_LVHLKDVSI_					0	0	0			REV__ENSG00000179299|ENST00000381782|NSUN7	REV__ENSG00000179299|ENST00000381782|NSUN7	MSMS	A375_MHC_IP_R2	2	512.4611206054688	2	512.313492	1022.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.66	1	142.69	142.19	143.19	0.030731								0	0	0	0.15486	1	55769	55769		4.3292	0.73274	1		+		35038	21554	25675	25850	34086	34086					0.10202906374036047
LVHLQVRTV	9	Unmodified	_LVHLQVRTV_					0	0	0			REV__nc|ENSG00000001617|Q13275-2|SEMA3F	REV__nc|ENSG00000001617|Q13275-2|SEMA3F	MULTI-MSMS	A375_MHC_IP_R2	2	355.6011962890625	3	355.557348	1063.65021	-0.50142	-0.00017828	-0.36471	-0.00012967	-0.86613	-0.00030796	355.5572114799035	28.154	0.4571	28.833	28.706	29.163	0.67857					13	8	2	0	0	0	0.50892	1	9783	9783		19.362	0	1	2849200	+		35039	16083	25676	25851	34087	34087					0.1209341735950602
LVHQPVPR	8	Unmodified	_LVHQPVPR_					0	0	0			REV__nc|ENSG00000205268|Q13946-3|PDE7A	REV__nc|ENSG00000205268|Q13946-3|PDE7A	MULTI-SECPEP	A375_MHC_IP_R1	1	473.6846618652344	2	473.285069	944.555585	-0.43718	-0.00020691	0.087735	4.1523E-05	-0.34945	-0.00016539	473.28501421514767	50.792	0.55753	50.792	50.561	51.119	0					19	10	3	0	0	0	0.86765	1	17999	17999		32.117	0	1	6123300	+		35040	27459	25677	25852	34088	34088					0.08108903608172113
LVHRKRVAT	9	Unmodified	_LVHRKRVAT_					0	0	0		ENST00000417391.1_1_2:216974075-216975204:+|nuORF;ENST00000429133.5_1_2:216974075-216982480:+|nuORF;ENST00000476360.1_1_2:216974075-216981630:+|nuORF	ENST00000417391.1_1_2:216974075-216975204:+|nuORF	ENST00000417391.1_1_2:216974075-216975204:+|nuORF	MSMS	A375_MHC_IP_R2	2	360.60491943359375	3	360.564725	1078.67235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.834	1	31.553	31.053	32.053	0.71857								0	0	0	0.15486	1	10865	10865		4.897	0.36815	1				35041	11700	25678	25853	34089	34089					0.1361564182791426
LVHRNLPAIL	10	Unmodified	_LVHRNLPAIL_					0	0	0		ENSG00000240891|ENST00000636933|PLCXD2	ENSG00000240891|ENST00000636933|PLCXD2	ENSG00000240891|ENST00000636933|PLCXD2	MULTI-SECPEP	A375_MHC_IP_R1	1	573.761474609375	2	573.361308	1144.70806	-0.12758	-7.3152E-05	-0.05485	-3.1449E-05	-0.18243	-0.0001046	573.3612536258742	62.737	0.61492	62.737	62.454	63.069	0					24	11	3	0	0	0	0.85226	1	22663	22663		6.2058	0	1	5258200			35042	9779	25679	25854	34090	34090					0.14149679284923877
LVICCEAEF	9	Unmodified	_LVICCEAEF_					0	0	0			REV__ENSG00000170871|ENST00000307659|KIAA0232	REV__ENSG00000170871|ENST00000307659|KIAA0232	MSMS	A375_MHC_IP_R1	1	513.7027587890625	2	513.735371	1025.45619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.614	1	69.614	69.114	70.114	0								0	0	0	0.15486	1	25264	25264		13.508	0.97634	1		+		35043	21026	25680	25855	34091	34091					-0.05552043183115529
LVIDIFFYLF	10	Unmodified	_LVIDIFFYLF_					0	0	0			REV__tr|U7SNK8|U7SNK8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02026PE=4SV=1	REV__tr|U7SNK8|U7SNK8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02026PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	645.762939453125	2	645.36265	1288.71075	-0.32411	-0.00020917	2.3194	0.0014968	1.9953	0.0012877	645.865522476827	89.052	0.50842	89.052	88.815	89.323	0					20	9	3	0	0	0	0.73628	1	32725	32725		28.487	8.0723	1	2036300	+		35044	28334	25681	25856	34092	34092					0.07794089899221035
LVIGYDAIF	9	Unmodified	_LVIGYDAIF_					0	0	0			REV__tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	REV__tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	505.148681640625	2	505.781493	1009.54843	-0.26001	-0.00013151	-3.9822	-0.0020141	-4.2422	-0.0021456	506.2812165819374	82.811	0.25246	82.811	82.622	82.874	0					5	4	2	0	0	0	0.67221	1	30218	30218		8.5933	0	1	713290	+		35045	28760	25682	25857	34093	34093					0.044041262170935624
LVILKRKWWKY	11	Unmodified	_LVILKRKWWKY_					0	0	0		ENSG00000110660|ENST00000525815|SLC35F2;nc|ENSG00000110660|Q8IXU6-2|SLC35F2;nc|ENSG00000110660|Q8IXU6-3|SLC35F2	ENSG00000110660|ENST00000525815|SLC35F2	ENSG00000110660|ENST00000525815|SLC35F2	MSMS	A375_MHC_IP_R1	1	767.3366088867188	2	766.976839	1531.93913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.26	1	59.26	58.76	59.76	0								0	0	0	0.16353	1	21312	21312		0.35063	0.35063	1				35046	2937	25683	25858	34094	34094					0.19443307266760712
LVIQTQEKVYE	11	Unmodified	_LVIQTQEKVYE_					0	0	0		FRY|p.G704E|1|0.55|ENSG00000073910|chr13:32171230-32171230|G/A|missense_variant	FRY|p.G704E|1|0.55|ENSG00000073910|chr13:32171230-32171230|G/A|missense_variant	FRY|p.G704E|1|0.55|ENSG00000073910|chr13:32171230-32171230|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	675.7686157226562	2	675.369192	1348.72383	-0.91762	-0.00061973	0.082515	5.5728E-05	-0.8351	-0.000564	675.3693238014298	67.096	0.46118	67.096	66.887	67.348	0					15	8	3	0	0	0	0.9574	1	24334	24334		19.362	4.1135	1	2363900			35047	14020	25684	25859	34095	34095					0.06341876220676568
LVISGREVFE	10	Unmodified	_LVISGREVFE_					0	0	0		ENSG00000065548|ENST00000337859|ZC3H15;nc|ENSG00000065548|Q8WU90-2|ZC3H15	ENSG00000065548|ENST00000337859|ZC3H15	ENSG00000065548|ENST00000337859|ZC3H15	MULTI-MSMS	A375_MHC_IP_R1	1	575.2373046875	2	574.819138	1147.62372	-0.082046	-4.7162E-05	-0.38935	-0.00022381	-0.4714	-0.00027097	574.818860742036	54.41	0.55758	54.41	54.213	54.771	0					18	10	3	0	0	0	0.70012	1	19548	19548		12.241	1.4167	1	3086700			35048	1388	25685	25860	34096	34096					0.055816836775193224
LVIYKYII	8	Unmodified	_LVIYKYII_					0	0	0		L1MA1_dup2411|chrX:76191796-76193207:-|1.4180499830709992|0.4902543273978149|1.53|471.0|89|3|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.4180499830709992|0.4902543273978149|1.53|471.0|89|3|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.4180499830709992|0.4902543273978149|1.53|471.0|89|3|anti-sense	MSMS	A375_MHC_IP_R1	1	512.6947021484375	2	512.825704	1023.63685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.89	1	85.89	85.39	86.39	0								0	0	0	0.16876	1	31485	31485		26.341	2.3207	1				35049	14253	25686	25861	34097	34097					0.12598166527561716
LVKAKNRI	8	Unmodified	_LVKAKNRI_					0	0	0		tr|U7SZL5|U7SZL5_FUSNUUrocanatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00788PE=3SV=1	tr|U7SZL5|U7SZL5_FUSNUUrocanatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00788PE=3SV=1	tr|U7SZL5|U7SZL5_FUSNUUrocanatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00788PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	471.71630859375	2	471.316369	940.618185	-0.40926	-0.00019289	0.076395	3.6006E-05	-0.33287	-0.00015688	471.3163713788025	52.361	1.0659	52.361	51.982	53.048	0					46	20	4	0	0	0	0.88799	1	18565	18565		20.871	2.7249	1	50730000			35050	29866	25687	25862	34098	34098					0.14550049676358867
LVKCCAYNSL	10	Unmodified	_LVKCCAYNSL_					0	0	0		nc|ENSG00000122025|P36888-2|FLT3;ENSG00000122025|ENST00000241453|FLT3	nc|ENSG00000122025|P36888-2|FLT3	nc|ENSG00000122025|P36888-2|FLT3	MSMS	A375_MHC_IP_R2	2	557.2425537109375	2	557.275195	1112.53584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.276	1	69.011	68.511	69.511	0.73511								0	0	0	0.14862	1	25873	25873		20.454	4.6064	1				35051	3757	25688	25863	34099	34099					-0.01592976509118671
LVKEDNLLMA	10	Unmodified	_LVKEDNLLMA_					0	0	0		ENSG00000173692|ENST00000308696|PSMD1;nc|ENSG00000173692|Q99460-2|PSMD1	ENSG00000173692|ENST00000308696|PSMD1	ENSG00000173692|ENST00000308696|PSMD1	MULTI-SECPEP	A375_MHC_IP_R2	2	573.7130737304688	2	573.315374	1144.6162	-0.28526	-0.00016354	-1.8528	-0.0010623	-2.1381	-0.0012258	573.8162248945024	74.925	1.1687	75.663	75.009	76.178	0.73752					35	22	3	0	0	0	0.91643	1	28556	28556		9.3831	0	1	4281200			35052	7821	25689	25864	34100	34100					0.0496720808559985
LVKFPHPMIY	10	Unmodified	_LVKFPHPMIY_					0	0	0			REV__ENST00000381298.6_1_5:55235198-55235360:-|nuORF	REV__ENST00000381298.6_1_5:55235198-55235360:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	415.9666442871094	3	415.566855	1243.67874	-0.028985	-1.2045E-05	0.32766	0.00013617	0.29868	0.00012412	415.5669325865497	31.879	0.45585	32.616	32.35	32.806	0.73692					20	8	3	0	0	0	0.69695	1	11293	11293		13.615	4.6386	1	4839200	+		35053	24232	25690	25865	34101	34101					0.06664398944440109
LVKFRKRRRLF	11	Unmodified	_LVKFRKRRRLF_					0	0	0			REV__ENSG00000204612|ENST00000376708|FOXB2;REV__ENSG00000171956|ENST00000396057|FOXB1	REV__ENSG00000204612|ENST00000376708|FOXB2	MSMS	A375_MHC_IP_R2	2	506.99078369140625	3	507.000045	1517.9783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.119	1	38.893	38.393	39.393	0.77451								0	0	0	0.16358	1	14002	14002		0.094841	0.094841	1		+		35054	22530;21113	25691	25866	34102	34102					0.2400345234100314
LVKHRRQIKKK	11	Unmodified	_LVKHRRQIKKK_					0	0	0		ENST00000405954.1_1_2:241501074-241501230:+|nuORF	ENST00000405954.1_1_2:241501074-241501230:+|nuORF	ENST00000405954.1_1_2:241501074-241501230:+|nuORF	MSMS	A375_MHC_IP_R2	2	717.3601684570312	2	717.480611	1432.94667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.32	1	119.86	119.36	120.36	0.5321								0	0	0	0.16331	1	45447	45447		1.4819	1.0236	1				35055	11596	25692	25867	34103	34103					0.2475145958703706
LVKKHVLARLL	11	Unmodified	_LVKKHVLARLL_					0	0	0		nc|ENSG00000133318|O95197-7|RTN3;nc|ENSG00000133318|O95197-2|RTN3;ENSG00000133318|ENST00000377819|RTN3	nc|ENSG00000133318|O95197-7|RTN3	nc|ENSG00000133318|O95197-7|RTN3	MSMS	A375_MHC_IP_R1	1	645.4093627929688	2	645.442632	1288.87071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.79	1	101.79	101.29	102.29	0								0	0	0	0.1636	1	37408	37408		0	0	1				35056	4505	25693	25868	34104	34104					0.23783062686948142
LVKKKATLPQE	11	Unmodified	_LVKKKATLPQE_					0	0	0			REV__ENSG00000120725|ENST00000394817|SIL1	REV__ENSG00000120725|ENST00000394817|SIL1	MSMS	A375_MHC_IP_R2	2	627.7223510742188	2	627.892638	1253.77072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.18	1	126.47	125.97	126.97	0.2951								0	0	0	0.16249	1	49344	49344		5.7319	0.43497	1		+		35057	18134	25694	25869	34105	34105					0.15398780562486536
LVKKKKKQLI	10	Unmodified	_LVKKKKKQLI_					0	0	0			REV__ENST00000265339.6_1_5:133726122-133726257:+|nuORF	REV__ENST00000265339.6_1_5:133726122-133726257:+|nuORF	MSMS	A375_MHC_IP_R1	1	409.6583557128906	3	409.295464	1224.86456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.63	1	143.63	143.13	144.13	0								0	0	0	0.15637	1	55098	55098		0.13989	0.13989	1		+		35058	23248	25695	25870	34106	34106					0.26112544455418174
LVKKTSLQAKS	11	Unmodified	_LVKKTSLQAKS_					0	0	0			REV__nc|ENSG00000170234|Q96N64-3|PWWP2A	REV__nc|ENSG00000170234|Q96N64-3|PWWP2A	MSMS	A375_MHC_IP_R1	1	601.9400024414062	2	601.876988	1201.73942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.86	1	146.86	146.36	147.36	0								0	0	0	0.16337	1	56168	56168		1.1933	0	1		+		35059	20975	25696	25871	34107	34107					0.14662207528385807
LVKLLLMH	8	Unmodified	_LVKLLLMH_					0	0	0		nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16;nc|ENSG00000041515|Q9Y6X6-4|MYO16;ENST00000375857.6_1_13:109445985-109707944:+|nuORF;nc|ENSG00000041515|Q9Y6X6-3|MYO16;nc|ENSG00000041515|Q9Y6X6-2|MYO16;MYO16|p.M315*|1|0.27|ENSG00000041515|chr13:108823185-108823185|A/-|frameshift_variant	nc|ENSG00000041515|Q9Y6X6|MYO16	nc|ENSG00000041515|Q9Y6X6|MYO16	MULTI-SECPEP	A375_MHC_IP_R2	2	967.0159301757812	1	966.61687	965.609594	-0.36564	-0.00035343	-0.7667	-0.00074111	-1.1323	-0.0010945	966.6163430805684	23.606	1.8314	24.236	23.164	24.996	0.63015					53	35	2	0	0	0	0.972	1	7740	7740		0	0	1	6159700			35060	1169	25697	25872	34108	34108					0.12541359715521594
LVKLLLMH	8	Unmodified	_LVKLLLMH_					0	0	0		nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16;nc|ENSG00000041515|Q9Y6X6-4|MYO16;ENST00000375857.6_1_13:109445985-109707944:+|nuORF;nc|ENSG00000041515|Q9Y6X6-3|MYO16;nc|ENSG00000041515|Q9Y6X6-2|MYO16;MYO16|p.M315*|1|0.27|ENSG00000041515|chr13:108823185-108823185|A/-|frameshift_variant	nc|ENSG00000041515|Q9Y6X6|MYO16	nc|ENSG00000041515|Q9Y6X6|MYO16	MULTI-SECPEP	A375_MHC_IP_R2	2	967.0162963867188	1	966.61687	965.609594	-0.42159	-0.00040751	-0.68982	-0.00066679	-1.1114	-0.0010743	966.6161535097697	22.2	0.76675	22.819	22.387	23.153	0.61932					22	14	2	0	0	0	0.972	1	6955	6955		0	0	1	1891100			35061	1169	25697	25872	34109	34109					0.12541359715521594
LVKLLLMH	8	Unmodified	_LVKLLLMH_					0	0	0		nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16;nc|ENSG00000041515|Q9Y6X6-4|MYO16;ENST00000375857.6_1_13:109445985-109707944:+|nuORF;nc|ENSG00000041515|Q9Y6X6-3|MYO16;nc|ENSG00000041515|Q9Y6X6-2|MYO16;MYO16|p.M315*|1|0.27|ENSG00000041515|chr13:108823185-108823185|A/-|frameshift_variant	nc|ENSG00000041515|Q9Y6X6|MYO16	nc|ENSG00000041515|Q9Y6X6|MYO16	MULTI-MATCH	A375_MHC_IP_R1	1		1	966.61687	965.609594	-0.10107	-9.7692E-05	-1.1743	-0.0011351	-1.2753	-0.0012328	966.6160535083789	24.117	1.9786	24.117	22.873	24.852	0	-0.059408	-0.00018733	NaN	0	64	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7074200			35062	1169	25697	25872							0.12541359715521594
LVKLSQRILGP	11	Unmodified	_LVKLSQRILGP_					0	0	0		ENSG00000198650|ENST00000355962|TAT	ENSG00000198650|ENST00000355962|TAT	ENSG00000198650|ENST00000355962|TAT	MSMS	A375_MHC_IP_R1	1	612.3855590820312	2	612.395348	1222.77614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.9	1	117.9	117.4	118.4	0								0	0	0	0.1623	1	43343	43343		6.7232	2.3939	1				35063	9295	25698	25873	34110	34110					0.1736650414493397
LVKLVPLVPLA	11	Unmodified	_LVKLVPLVPLA_					0	0	0		ENST00000225964.9_1_17:48265286-48266811:-|nuORF	ENST00000225964.9_1_17:48265286-48266811:-|nuORF	ENST00000225964.9_1_17:48265286-48266811:-|nuORF	MSMS	A375_MHC_IP_R1	1	581.4710693359375	2	581.40211	1160.78967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.033	1	94.033	93.533	94.533	0								0	0	0	0.16353	1	34562	34562		0.35063	0.35063	1				35064	10120	25699	25874	34111	34111					0.2157036192418218
LVKMQVMLK	9	Unmodified	_LVKMQVMLK_					0	0	0			REV__ENSG00000135968|ENST00000309863|GCC2	REV__ENSG00000135968|ENST00000309863|GCC2	MULTI-SECPEP	A375_MHC_IP_R2	2	364.14691162109375	3	363.888941	1088.64499	-0.7196	-0.00026185	0.4838	0.00017605	-0.2358	-8.5805E-05	363.88895290358965	28.716	0.79804	29.415	29.234	30.032	0.69872					19	15	2	0	0	0	0.67539	1	9927	9927		7.609	4.3276	1	17888000	+		35065	18905	25700	25875	34112	34112					0.10421654181027407
LVKQQPQQTVP	11	Unmodified	_LVKQQPQQTVP_					0	0	0			REV__ENST00000409014.5_1_14:69676187-69676861:+|nuORF	REV__ENST00000409014.5_1_14:69676187-69676861:+|nuORF	MSMS	A375_MHC_IP_R2	2	633.6651611328125	2	633.364244	1264.71394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.366	1	91.099	90.599	91.599	0.73273								0	0	0	0.1629	1	34383	34383		3.5965	0	1		+		35066	16770	25701	25876	34113	34113					0.0921673300592829
LVKREDYLY	9	Unmodified	_LVKREDYLY_					0	0	0		ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000259112|E9PQ53|NDUFC2-KCTD14	ENSG00000151366|ENST00000281031|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	MULTI-MSMS	A375_MHC_IP_R1	1	600.7283935546875	2	599.826963	1197.63937	-0.36309	-0.00021779	0.31346	0.00018802	-0.049629	-2.9769E-05	599.8272130589518	36.059	0.35527	36.059	35.932	36.287	0					14	6	3	0	0	0	0.26169	1	12049	12049		29.082	7.3349	1	4273500			35067	5900	25702	25877	34114	34114					0.04845970194560323
LVKREDYLY	9	Unmodified	_LVKREDYLY_					0	0	0		ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000259112|E9PQ53|NDUFC2-KCTD14	ENSG00000151366|ENST00000281031|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	MULTI-MSMS	A375_MHC_IP_R2	2	600.7279052734375	2	599.826963	1197.63937	-0.75086	-0.00045038	0.21696	0.00013014	-0.53389	-0.00032024	599.8270567653524	35.192	0.35416	35.955	35.778	36.132	0.76338					16	6	3	0	0	0	0.21241	1	12758	12758		32.786	9.6373	1	5345500			35068	5900	25702	25877	34115	34115					0.04845970194560323
LVKREDYLY	9	Unmodified	_LVKREDYLY_					0	0	0		ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000259112|E9PQ53|NDUFC2-KCTD14	ENSG00000151366|ENST00000281031|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	MULTI-SECPEP	A375_MHC_IP_R2	2	400.6200866699219	3	400.220401	1197.63937	-0.2746	-0.0001099	0.23232	9.2978E-05	-0.042282	-1.6922E-05	400.22041485760917	35.192	0.60567	35.955	35.727	36.333	0.76338					24	11	3	0	0	0	0.55534	1	12730	12730		32.037	4.8142	1	16947000			35069	5900	25702	25877	34116	34116					0.04845970194560323
LVKRHTLG	8	Unmodified	_LVKRHTLG_					0	0	0			REV__ENST00000587992.1_1_19:10445108-10445636:-|nuORF	REV__ENST00000587992.1_1_19:10445108-10445636:-|nuORF	MSMS	A375_MHC_IP_R2	2	462.3414306640625	2	462.292894	922.571235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.16	1	143.19	142.69	143.69	0.030731								0	0	0	0.16876	1	55954	55954		2.5775	0	1		+		35070	26407	25703	25878	34117	34117					0.10685190125241206
LVKRLNAFAMA	11	Unmodified	_LVKRLNAFAMA_					0	0	0			REV__ENST00000496756.1_1_1:120254528-120263945:+|nuORF	REV__ENST00000496756.1_1_1:120254528-120263945:+|nuORF	MSMS	A375_MHC_IP_R1	1	411.934814453125	3	411.909392	1232.70635	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.168	1	32.168	31.668	32.668	0								0	0	0	0.16179	1	10369	10369		4.7159	0	1		+		35071	25461	25704	25879	34118	34118					0.09930302204656982
LVKSELLKKL	10	Unmodified	_LVKSELLKKL_					0	0	0			REV__tr|U7T2V9|U7T2V9_FUSNULargeribosomalsubunitproteinbL9OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplIPE=3SV=1	REV__tr|U7T2V9|U7T2V9_FUSNULargeribosomalsubunitproteinbL9OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplIPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	1170.0257568359375	1	1170.78202	1169.77475	-0.58143	-0.00068072	0.038761	4.538E-05	-0.54267	-0.00063534	1171.7851440077325	122.94	0.70486	122.94	122.83	123.54	0					22	13	3	0	0	0	0.94421	1	46008	46008		1.6526	0	1	272740000	+		35072	28759	25705	25880	34119	34119					0.19664870056180916
LVKSGLNFL	9	Unmodified	_LVKSGLNFL_					0	0	0			REV__ENST00000507493.1_1_4:514867-515974:+|nuORF	REV__ENST00000507493.1_1_4:514867-515974:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	495.68707275390625	2	495.80276	989.590967	-0.46591	-0.000231	-1.6633	-0.00082468	-2.1292	-0.0010557	495.80167484540107	64.815	0.20248	65.553	65.41	65.613	0.73811					5	3	2	0	0	0	0.39388	1	24546	24546		25.399	0	1	811120	+		35073	21273	25706	25881	34120	34120					0.09575521345323068
LVKSKRYKFKR	11	Unmodified	_LVKSKRYKFKR_					0	0	0			REV__ENST00000290209.9_1_15:34610859-34610970:-|nuORF	REV__ENST00000290209.9_1_15:34610859-34610970:-|nuORF	MSMS	A375_MHC_IP_R1	1	485.0082702636719	3	484.976906	1451.90889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.601	1	92.601	92.101	93.101	0								0	0	0	0.16305	1	34032	34032		2.8433	2.3373	1		+		35074	23352	25707	25882	34121	34121					0.20100948601566415
LVKTDIKKF	9	Unmodified	_LVKTDIKKF_					0	0	0			REV__nc|ENSG00000172915|Q8NFP9|NBEA	REV__nc|ENSG00000172915|Q8NFP9|NBEA	MULTI-MSMS	A375_MHC_IP_R1	1	364.96563720703125	3	364.56562	1090.67503	0.1316	4.7975E-05	-0.071985	-2.6243E-05	0.059611	2.1732E-05	364.56564061282313	27.339	0.50598	27.339	27.128	27.634	0					23	9	3	0	0	0	0.65748	1	8298	8298		10.8	3.1906	1	4093000	+		35075	21180	25708	25883	34122	34122					0.13332052442206077
LVKVHSLLN	9	Unmodified	_LVKVHSLLN_					0	0	0			REV__nc|ENSG00000147124|P51814-4|ZNF41	REV__nc|ENSG00000147124|P51814-4|ZNF41	MSMS	A375_MHC_IP_R1	1	511.9390869140625	2	511.821484	1021.62842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.481	1	79.481	78.981	79.981	0								0	0	0	0.15069	1	29013	29013		20.454	1.1966	1		+		35076	19570	25709	25884	34123	34123					0.11846612610941065
LVKYIQGF	8	Unmodified	_LVKYIQGF_					0	0	0			REV__nc|ENSG00000165209|Q96SI9-2|STRBP	REV__nc|ENSG00000165209|Q96SI9-2|STRBP	MSMS	A375_MHC_IP_R1	1	484.71685791015625	2	484.284203	966.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.296	1	96.296	95.796	96.796	0								0	0	0	0.16876	1	35391	35391		11.114	0	1		+		35077	20560	25710	25885	34124	34124					0.06923849799557047
LVLAFLRQPT	10	Unmodified	_LVLAFLRQPT_					0	0	0			REV__ENST00000544032.5_1_12:12966301-12974356:+|nuORF	REV__ENST00000544032.5_1_12:12966301-12974356:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	386.3157043457031	3	386.572886	1156.69683	0.29817	0.00011526	1.4262	0.00055134	1.7244	0.0006666	386.57351800242697	40.484	0.56014	40.484	40.1	40.66	0					14	10	2	0	0	0	0.75488	1	13985	13985		16.275	9.1728	1	1407200	+		35078	22630	25711	25886	34125	34125					0.12474857190773037
LVLAFLRQPT	10	Unmodified	_LVLAFLRQPT_					0	0	0			REV__ENST00000544032.5_1_12:12966301-12974356:+|nuORF	REV__ENST00000544032.5_1_12:12966301-12974356:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	386.2889099121094	3	386.572886	1156.69683	-0.18396	-7.1115E-05	-0.14973	-5.7883E-05	-0.3337	-0.000129	386.9071836778093	39.443	0.25318	40.217	40.118	40.371	0.77451					7	4	2	0	0	0	0.91773	1	14598	14598		9.7643	4.3615	1	1110700	+		35079	22630	25711	25886	34126	34126					0.12474857190773037
LVLALIYNLVG	11	Unmodified	_LVLALIYNLVG_					0	0	0		nc|ENSG00000123191|P35670-2|ATP7B;nc|ENSG00000123191|P35670-3|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B	nc|ENSG00000123191|P35670-2|ATP7B	nc|ENSG00000123191|P35670-2|ATP7B	MSMS	A375_MHC_IP_R1	1	396.605224609375	3	396.584792	1186.73255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.138	1	65.138	64.638	65.638	0								0	0	0	0.16301	1	23578	23578		3.0723	0.33707	1				35080	3833	25712	25887	34127	34127					0.14664894647785331
LVLCEQLW	8	Unmodified	_LVLCEQLW_					0	0	0			REV__ENST00000571796.5_1_17:80869637-80887508:+|nuORF	REV__ENST00000571796.5_1_17:80869637-80887508:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	501.6417236328125	2	502.267696	1002.52084	-0.74091	-0.00037214	-2.6218	-0.0013169	-3.3627	-0.001689	502.2672599201493	67.655	0.45559	67.655	67.399	67.854	0					10	8	2	0	0	0	0.92636	1	24538	24538		11.64	2.2929	1	455480	+		35081	26284	25713	25888	34128	34128					0.019678996852007913
LVLEEQLHLI	10	Unmodified	_LVLEEQLHLI_					0	0	0			REV__ENST00000519325.1_1_5:153476744-153529428:+|nuORF	REV__ENST00000519325.1_1_5:153476744-153529428:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	604.258544921875	2	603.858264	1205.70197	-0.62646	-0.00037829	1.2183	0.00073566	0.5918	0.00035736	603.8588703498007	134.55	0.40408	134.55	134.32	134.73	0					11	7	2	0	0	0	0.60238	1	51890	51890		39.95	0	1	10020000	+		35082	25684	25714	25889	34129	34129					0.10735116262753763
LVLEETKLD	9	Unmodified	_LVLEETKLD_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-MSMS	A375_MHC_IP_R1	1	530.7001342773438	2	530.300247	1058.58594	-0.41343	-0.00021924	-0.33267	-0.00017641	-0.7461	-0.00039565	530.2994088836224	42.644	0.80961	42.644	42.082	42.891	0					22	15	2	0	0	0	0.14922	1	14777	14777		41.84	5.3334	1	4253100	+		35083	22689	25715	25890	34130	34130					0.058991726920339715
LVLEETKLD	9	Unmodified	_LVLEETKLD_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-MSMS	A375_MHC_IP_R2	2	530.700439453125	2	530.300247	1058.58594	-0.67934	-0.00036025	0.4259	0.00022586	-0.25344	-0.0001344	530.2999992346117	41.681	0.60998	42.456	41.997	42.607	0.77451					15	11	2	0	0	0	0.14922	1	15473	15473		41.84	5.3334	1	3086300	+		35084	22689	25715	25890	34131	34131					0.058991726920339715
LVLERINKV	9	Unmodified	_LVLERINKV_					0	0	0			REV__ENSG00000109323|ENST00000647097|MANBA	REV__ENSG00000109323|ENST00000647097|MANBA	MULTI-MSMS	A375_MHC_IP_R2	2	362.30078125	3	361.901003	1082.68118	-0.11255	-4.0733E-05	0.13554	4.9051E-05	0.022984	8.3179E-06	361.9008527486074	42.042	0.51035	42.817	42.659	43.169	0.77451					15	9	2	0	0	0	0.39434	1	15667	15667		24.991	1.2012	1	2613800	+		35085	17577	25716	25891	34132	34132					0.143145706737414
LVLETICNF	9	Unmodified	_LVLETICNF_					0	0	0			REV__ENSG00000111737|ENST00000229340|RAB35	REV__ENSG00000111737|ENST00000229340|RAB35	MSMS	A375_MHC_IP_R2	2	526.166259765625	2	526.27826	1050.54197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.402	1	86.138	85.638	86.638	0.73601								0	0	0	0.15486	1	32467	32467		8.5933	0	1		+		35086	17691	25717	25892	34133	34133					0.018718649940410614
LVLFTEGAAF	10	Unmodified	_LVLFTEGAAF_					0	0	0			REV__nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD	REV__nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD	MULTI-SECPEP	A375_MHC_IP_R2	2	534.6892700195312	2	534.292225	1066.5699	-0.96324	-0.00051465	-1.6077	-0.000859	-2.571	-0.0013737	534.7939356825469	54.673	1.2693	55.424	55.068	56.337	0.75075					31	24	2	0	0	0	0.57563	1	20650	20650		32.305	5.4218	1	5312600	+		35087	22627	25718	25893	34134	34134					0.03927511245797177
LVLGLSTYPV	10	Unmodified	_LVLGLSTYPV_					0	0	0		ENST00000391352.1_1_17:39464259-39464415:-|nuORF	ENST00000391352.1_1_17:39464259-39464415:-|nuORF	ENST00000391352.1_1_17:39464259-39464415:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	531.7158203125	2	531.3157	1060.61685	-0.80703	-0.00042879	-0.015697	-8.3399E-06	-0.82272	-0.00043713	531.3157966380139	85.614	0.50884	85.614	85.412	85.921	0					17	9	2	0	0	0	0.5761	1	31474	31474		26.884	5.3467	1	2859800			35088	11407	25719	25894	34135	34135					0.0889637079694694
LVLHLLRFREF	11	Unmodified	_LVLHLLRFREF_					0	0	0		ADAM7|p.S77F|1|0.4|ENSG00000069206|chr8:24447259-24447259|C/T|missense_variant	ADAM7|p.S77F|1|0.4|ENSG00000069206|chr8:24447259-24447259|C/T|missense_variant	ADAM7|p.S77F|1|0.4|ENSG00000069206|chr8:24447259-24447259|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	721.8958740234375	2	721.935171	1441.85579	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.19	1	113.19	112.69	113.69	0								0	0	0	0.1629	1	41490	41490		3.5965	0	1				35089	51	25720	25895	34136	34136					0.15253570818936169
LVLILLHTV	9	Unmodified	_LVLILLHTV_					0	0	0		ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	MULTI-SECPEP	A375_MHC_IP_R1	1	510.7098083496094	2	510.844428	1019.6743	-0.20909	-0.00010681	0.10898	5.5673E-05	-0.10011	-5.114E-05	511.3458823109019	109.1	0.50668	109.1	108.76	109.27	0					11	9	2	0	0	0	0.69504	1	39929	39929		12.532	0.89125	1	456680			35090	9445	25721	25896	34137	34137					0.16525257793171022
LVLIVVKKAV	10	Unmodified	_LVLIVVKKAV_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	MSMS	A375_MHC_IP_R1	1	541.4535522460938	2	541.389003	1080.76345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.115	1	24.115	23.615	24.615	0								0	0	0	0.15585	1	6762	6762		1.8442	1.3195	1		+		35091	19624	25722	25897	34138	34138					0.22630092752683595
LVLIVVKKAV	10	Unmodified	_LVLIVVKKAV_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	MSMS	A375_MHC_IP_R2	2	541.4530639648438	2	541.389003	1080.76345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.409	1	24.039	23.539	24.539	0.63014								0	0	0	0.15585	1	7525	7525		1.8442	1.3195	1		+		35092	19624	25722	25897	34139	34139					0.22630092752683595
LVLKLIFSIFN	11	Unmodified	_LVLKLIFSIFN_					0	0	0			REV__CETP|p.T191I|1|0.29|ENSG00000087237|chr16:56971077-56971077|C/T|missense_variant	REV__CETP|p.T191I|1|0.29|ENSG00000087237|chr16:56971077-56971077|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	654.2269287109375	2	653.910299	1305.80605	-0.62223	-0.00040688	0.56792	0.00037137	-0.054311	-3.5515E-05	654.4118627573102	90.544	0.40646	90.544	90.235	90.641	0					9	7	2	0	0	0	0.99606	1	33239	33239		6.2058	4.3615	1	1298100	+		35093	15642	25723	25898	34140	34140					0.16537443090282977
LVLKSSEPV	9	Unmodified	_LVLKSSEPV_					0	0	0		SON-ITSN1|1|fusion;SON-ITSN1|3|fusion;SON-ITSN1|2|fusion;SON-ITSN1|4|fusion;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-5|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-8|SON	SON-ITSN1|1|fusion	SON-ITSN1|1|fusion	MULTI-SECPEP	A375_MHC_IP_R2	2	486.19976806640625	2	486.292225	970.569897	-0.53622	-0.00026076	0.92633	0.00045047	0.39012	0.00018971	486.2926213305804	42.594	0.45769	43.366	43.065	43.523	0.7724					11	8	2	0	0	0	0.62767	1	15802	15802		11.64	0	1	2002600			35094	29217	25724	25899	34141	34141					0.08343511245811897
LVLLPIKKQR	10	Unmodified	_LVLLPIKKQR_					0	0	0		nc|ENSG00000143469|Q8NB59-2|SYT14;nc|ENSG00000143469|Q8NB59-3|SYT14;nc|ENSG00000143469|Q8NB59|SYT14;ENSG00000143469|ENST00000367019|SYT14;nc|ENSG00000143469|Q8NB59-5|SYT14;nc|ENSG00000143469|Q8NB59-7|SYT14	nc|ENSG00000143469|Q8NB59-2|SYT14	nc|ENSG00000143469|Q8NB59-2|SYT14	MULTI-SECPEP	A375_MHC_IP_R2	2	603.9735107421875	2	604.416083	1206.81761	-0.32602	-0.00019705	-0.070592	-4.2667E-05	-0.39661	-0.00023972	604.9165462571156	93.407	0.3062	94.148	93.952	94.258	0.74099					7	5	2	0	0	0	0.94819	1	35528	35528		0	0	1	2333500			35095	5395	25725	25900	34142	34142					0.22247684904255038
LVLLQLLPVL	10	Unmodified	_LVLLQLLPVL_					0	0	0			REV__ENSG00000170439|ENST00000394252|METTL7B	REV__ENSG00000170439|ENST00000394252|METTL7B	MSMS	A375_MHC_IP_R1	1	560.9646606445312	2	560.888835	1119.76312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.8	1	100.8	100.3	101.3	0								0	0	0	0.15256	1	37050	37050		12.532	0.89125	1		+		35096	20991	25726	25901	34143	34143					0.20802673032835628
LVLMLWYLW	9	Unmodified	_LVLMLWYLW_					0	0	0		ENST00000366955.7_1_1:214818152-214818242:+|nuORF	ENST00000366955.7_1_1:214818152-214818242:+|nuORF	ENST00000366955.7_1_1:214818152-214818242:+|nuORF	MSMS	A375_MHC_IP_R1	1	618.9212646484375	2	618.846113	1235.67767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.31	1	104.31	103.81	104.81	0								0	0	0	0.15427	1	38302	38302		14.582	0.67564	1				35097	11072	25727	25902	34144	34144					0.06926184575536354
LVLNELESW	9	Unmodified	_LVLNELESW_					0	0	0			REV__nc|ENSG00000122884|P13674-3|P4HA1	REV__nc|ENSG00000122884|P13674-3|P4HA1	MULTI-SECPEP	A375_MHC_IP_R1	1	552.1914672851562	2	551.792589	1101.57063	-0.48675	-0.00026859	-0.26468	-0.00014605	-0.75143	-0.00041463	552.2941639093395	101.42	0.65712	101.42	101.09	101.75	0					19	12	2	0	0	0	0.74651	1	37306	37306		4.756	4.2977	1	1478500	+		35098	18221	25728	25903	34145	34145					0.023903058948462785
LVLQNELKIDQ	11	Unmodified	_LVLQNELKIDQ_					0	0	0		ENSG00000159433|ENST00000290607|STARD9;ENST00000564158.5_1_15:42955968-42961628:+|nuORF	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-SECPEP	A375_MHC_IP_R2	2	437.95050048828125	3	438.253882	1311.73982	-0.72957	-0.00031974	-0.31145	-0.0001365	-1.041	-0.00045623	438.2534121499787	26.042	0.3556	26.702	26.602	26.957	0.65992					8	6	2	0	0	0	0.98968	1	8787	8787		13.519	3.7544	1	936010			35099	6371	25729	25904	34146	34146					0.09641582457561526
LVLRDNKIR	9	Unmodified	_LVLRDNKIR_					0	0	0		ENSG00000083782|ENST00000261172|EPYC	ENSG00000083782|ENST00000261172|EPYC	ENSG00000083782|ENST00000261172|EPYC	MULTI-SECPEP	A375_MHC_IP_R2	2	376.91375732421875	3	376.240018	1125.69823	-0.13692	-5.1515E-05	0.13691	5.1511E-05	-1.0897E-05	-4.0999E-09	376.24019668484044	26.475	0.40606	27.135	27.008	27.414	0.65992					9	7	2	0	0	0	0.78353	1	8967	8967		6.1918	0	1	2367600			35100	1785	25730	25905	34147	34147					0.14040491279547496
LVLRRRKRRRI	11	Unmodified	_LVLRRRKRRRI_					0	0	0		ENST00000496567.5_1_9:97782205-97782394:+|nuORF	ENST00000496567.5_1_9:97782205-97782394:+|nuORF	ENST00000496567.5_1_9:97782205-97782394:+|nuORF	MSMS	A375_MHC_IP_R1	1	507.98040771484375	3	508.01821	1521.0328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.544	1	61.544	61.044	62.044	0								0	0	0	0.1636	1	22194	22194		0	0	1				35101	12728	25731	25906	34148	34148					0.2931246421242122
LVLRRRKRRRI	11	Unmodified	_LVLRRRKRRRI_					0	0	0		ENST00000496567.5_1_9:97782205-97782394:+|nuORF	ENST00000496567.5_1_9:97782205-97782394:+|nuORF	ENST00000496567.5_1_9:97782205-97782394:+|nuORF	MSMS	A375_MHC_IP_R1	1	761.5210571289062	2	761.523676	1521.0328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.48	1	124.48	123.98	124.98	0								0	0	0	0.1636	1	46889	46889		0	0	1				35102	12728	25731	25906	34149	34149					0.2931246421242122
LVLRRYLRFAF	11	Unmodified	_LVLRRYLRFAF_					0	0	0			REV__nc|ENSG00000170054|Q86WD7-2|SERPINA9	REV__nc|ENSG00000170054|Q86WD7-2|SERPINA9	MULTI-SECPEP	A375_MHC_IP_R1	1	726.8402099609375	2	727.443163	1452.87177	-0.17943	-0.00013052	-3.7376	-0.0027189	-3.917	-0.0028494	727.4399165898517	126.6	0.25296	126.6	126.51	126.76	0					6	4	2	0	0	0	0.99921	1	48384	48384		1.3295	0.13619	1	3946700	+		35103	20963	25732	25907	34150	34150					0.16345277055825136
LVLTGFKKKII	11	Unmodified	_LVLTGFKKKII_					0	0	0		ENST00000325875.7_1_9:86615947-86616031:+|nuORF	ENST00000325875.7_1_9:86615947-86616031:+|nuORF	ENST00000325875.7_1_9:86615947-86616031:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	630.9249877929688	2	630.426116	1258.83768	-0.39086	-0.00024641	-1.047	-0.00066009	-1.4379	-0.0009065	630.926096747333	107.34	0.15323	107.34	107.24	107.39	0					4	2	2	0	0	0	0.73557	1	39374	39374		3.5965	1.7523	1	585420			35104	10725	25733	25908	34151	34151					0.21861435844243715
LVLTLLCLAM	10	Unmodified	_LVLTLLCLAM_					0	0	0			REV__MUC17|p.T2550Lfs*27|1|0.35|ENSG00000169876|chr7:101039063-101039063|T/-|frameshift_variant	REV__MUC17|p.T2550Lfs*27|1|0.35|ENSG00000169876|chr7:101039063-101039063|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	544.634521484375	2	545.324156	1088.63376	-0.23843	-0.00013002	0.074571	4.0665E-05	-0.16385	-8.9354E-05	545.3239085089981	70.008	0.45644	70.008	69.832	70.289	0					17	8	3	0	0	0	0.92051	1	25410	25410		4.3292	0	1	4611500	+		35105	20948	25734	25909	34152	34152					0.09298832086869879
LVLVAFLGTV	10	Unmodified	_LVLVAFLGTV_					0	0	0		tr|U7T4W4|U7T4W4_FUSNUProteintranslocasesubunitSecYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secYPE=3SV=1	tr|U7T4W4|U7T4W4_FUSNUProteintranslocasesubunitSecYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secYPE=3SV=1	tr|U7T4W4|U7T4W4_FUSNUProteintranslocasesubunitSecYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secYPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1551513671875	2	516.328611	1030.64267	-0.49483	-0.0002555	0.36167	0.00018674	-0.13317	-6.8757E-05	516.3287228901391	102.91	0.61053	102.91	102.61	103.22	0					19	11	2	0	0	0	0.76414	1	37731	37731		26.884	1.4843	1	2114700			35106	30005	25735	25910	34153	34153					0.1285726503922433
LVLVKRLLAV	10	Unmodified	_LVLVKRLLAV_					0	0	0		nc|ENSG00000143452|Q86X24-2|HORMAD1;ENSG00000143452|ENST00000361824|HORMAD1	nc|ENSG00000143452|Q86X24-2|HORMAD1	nc|ENSG00000143452|Q86X24-2|HORMAD1	MSMS	A375_MHC_IP_R2	2	562.3612060546875	2	562.399902	1122.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.301	1	97.051	96.551	97.551	0.75045								0	0	0	0.15628	1	36566	36566		0.45834	0	1				35107	5393	25736	25911	34154	34154					0.22876897501282656
LVMDPRLLDYC	11	Unmodified	_LVMDPRLLDYC_					0	0	0			REV__ENSG00000070371|ENST00000427926|CLTCL1	REV__ENSG00000070371|ENST00000427926|CLTCL1	MSMS	A375_MHC_IP_R1	1	669.31298828125	2	669.333241	1336.65193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.344	1	84.344	83.844	84.844	0								0	0	0	0.16051	1	30889	30889		13.906	7.1829	1		+		35108	16574	25737	25912	34155	34155					-0.002930777290430342
LVMQMVPSL	9	Unmodified	_LVMQMVPSL_					0	0	0		ENST00000476264.6_1_2:27700082-27706238:-|nuORF	ENST00000476264.6_1_2:27700082-27706238:-|nuORF	ENST00000476264.6_1_2:27700082-27706238:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	508.6748046875	2	509.277206	1016.53986	-0.65087	-0.00033147	-0.77159	-0.00039295	-1.4225	-0.00072443	509.2783602736673	90.495	0.60998	90.495	90.387	90.997	0					13	11	2	0	0	0	0.73363	1	33303	33303		6.7232	1.9672	1	923820			35109	12430	25738	25913	34156	34156					0.03225112984614498
LVMWLKNV	8	Unmodified	_LVMWLKNV_					0	0	0			REV__nc|ENSG00000108506|Q9H0H0|INTS2	REV__nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MSMS	A375_MHC_IP_R1	1	502.6952819824219	2	501.793881	1001.57321	-0.58748	-0.00029479	-1.0492	-0.00052647	-1.6367	-0.00082127	502.2950476695485	129.85	0.50638	129.85	129.65	130.16	0					21	9	4	0	0	0	0.72761	1	49945	49945		26.341	9.2284	1	26555000	+		35110	17534	25739	25914	34157	34157					0.07248482818818047
LVMWLKNV	8	Unmodified	_LVMWLKNV_					0	0	0			REV__nc|ENSG00000108506|Q9H0H0|INTS2	REV__nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-SECPEP	A375_MHC_IP_R1	1	501.18939208984375	2	501.793881	1001.57321	-0.58748	-0.00029479	-1.0492	-0.00052647	-1.6367	-0.00082127	502.2950476695485	129.85	0.50638	129.85	129.65	130.16	0					21	9	4	0	0	0	0.93416	1	49965	49965		9.3474	0	1	26555000	+		35111	17534	25739	25914	34158	34158					0.07248482818818047
LVMYPKLEYVI	11	Unmodified	_LVMYPKLEYVI_					0	0	0		CAPZA3|p.G285E|1|0.11|ENSG00000177938|chr12:18739122-18739122|G/A|missense_variant	CAPZA3|p.G285E|1|0.11|ENSG00000177938|chr12:18739122-18739122|G/A|missense_variant	CAPZA3|p.G285E|1|0.11|ENSG00000177938|chr12:18739122-18739122|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	684.7828979492188	2	684.3858	1366.75705	-0.88275	-0.00060414	-0.63631	-0.00043548	-1.5191	-0.0010396	684.3851609592857	133.28	1.2234	133.28	132.69	133.91	0					58	23	4	0	0	0	0.73795	1	51593	51593		1.3295	0	1	9506100			35112	289	25740	25915	34159	34159					0.0883378673900097
LVMYPKLEYVI	11	Unmodified	_LVMYPKLEYVI_					0	0	0		CAPZA3|p.G285E|1|0.11|ENSG00000177938|chr12:18739122-18739122|G/A|missense_variant	CAPZA3|p.G285E|1|0.11|ENSG00000177938|chr12:18739122-18739122|G/A|missense_variant	CAPZA3|p.G285E|1|0.11|ENSG00000177938|chr12:18739122-18739122|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	456.99224853515625	3	456.592959	1366.75705	-0.50157	-0.00022901	-0.70887	-0.00032366	-1.2104	-0.00055268	456.5924511059345	133.28	1.2227	133.28	132.64	133.86	0					47	23	3	0	0	0	0.99921	1	51364	51364		0.45452	0.046251	1	5902700			35113	289	25740	25915	34160	34160					0.0883378673900097
LVNELTEFAK	10	Unmodified	_LVNELTEFAK_					0	0	0		CON__P02769	CON__P02769	CON__P02769	MULTI-SECPEP	A375_MHC_IP_R1	1	582.7185668945312	2	582.318971	1162.62339	-0.061697	-3.5928E-05	-0.47815	-0.00027843	-0.53984	-0.00031436	582.318667632067	71.376	0.35696	71.376	71.159	71.516	0					11	6	2	0	0	0	0.4546	1	25967	25967		43.982	5.8063	1	2475800		+	35114	586	25741	25916	34161	34161					0.04858263957657982
LVNELTEFAK	10	Unmodified	_LVNELTEFAK_					0	0	0		CON__P02769	CON__P02769	CON__P02769	MULTI-MSMS	A375_MHC_IP_R2	2	582.7186889648438	2	582.318971	1162.62339	-0.38987	-0.00022703	0.39357	0.00022918	0.0037012	2.1553E-06	582.3195240760172	70.65	0.40536	71.384	71.2	71.605	0.73421					14	7	3	0	0	0	0.12141	1	26811	26811		59.052	17.097	1	2985200		+	35115	586	25741	25916	34162	34162					0.04858263957657982
LVNEVTEFAK	10	Unmodified	_LVNEVTEFAK_					0	0	0		nc|ENSG00000163631|P02768-3|ALB;ENSG00000163631|ENST00000295897|ALB;CON__P02768-1	nc|ENSG00000163631|P02768-3|ALB	nc|ENSG00000163631|P02768-3|ALB	MULTI-SECPEP	A375_MHC_IP_R1	1	575.7107543945312	2	575.311146	1148.60774	-0.1317	-7.5769E-05	0.055221	3.1769E-05	-0.076479	-4.3999E-05	575.3111391164966	55.815	0.61009	55.815	55.533	56.143	0					17	11	2	0	0	0	0.25253	1	19961	19961		70.929	17.525	1	5572200		+	35116	585	25742	25917	34163	34163					0.03937977440614304
LVNEVTEFAK	10	Unmodified	_LVNEVTEFAK_					0	0	0		nc|ENSG00000163631|P02768-3|ALB;ENSG00000163631|ENST00000295897|ALB;CON__P02768-1	nc|ENSG00000163631|P02768-3|ALB	nc|ENSG00000163631|P02768-3|ALB	MULTI-SECPEP	A375_MHC_IP_R2	2	575.7105712890625	2	575.311146	1148.60774	-0.33525	-0.00019287	-0.0318	-1.8295E-05	-0.36705	-0.00021117	575.3110554458005	55.008	0.61148	55.759	55.523	56.135	0.75075					20	11	3	0	0	0	0.15514	1	20778	20778		75.571	22.167	1	7622300		+	35117	585	25742	25917	34164	34164					0.03937977440614304
LVNNAGIF	8	Unmodified	_LVNNAGIF_					0	0	0		RDH16|p.S116F|3|0.26|ENSG00000139547|chr12:56955131-56955131|G/A|missense_variant;HSD17B6|p.L116F|1|0.16|ENSG00000025423|chr12:56782006-56782006|C/T|missense_variant	RDH16|p.S116F|3|0.26|ENSG00000139547|chr12:56955131-56955131|G/A|missense_variant	RDH16|p.S116F|3|0.26|ENSG00000139547|chr12:56955131-56955131|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	424.63720703125	2	424.237253	846.459953	-0.082128	-3.4842E-05	0.078287	3.3212E-05	-0.0038413	-1.6296E-06	424.23713027479846	64.31	0.86638	65.05	64.8	65.666	0.74023					28	16	3	0	0	0	0.72761	1	24388	24388		26.341	0	1	2640600			35118	14135	25743	25918	34165	34165					0.030581306972976563
LVNNQIPTGSL	11	Unmodified	_LVNNQIPTGSL_					0	0	0			REV__nc|ENSG00000095564|O14981-2|BTAF1	REV__nc|ENSG00000095564|O14981-2|BTAF1	MULTI-MSMS	A375_MHC_IP_R1	1	578.7215576171875	2	578.322045	1154.62954	-0.020386	-1.179E-05	-1.6988	-0.00098244	-1.7192	-0.00099423	578.3202990601666	127.95	1.6757	127.95	127.62	129.3	0					77	32	4	0	0	0	0.72869	1	49442	49442		10.151	1.4052	1	82630000	+		35119	16994	25744	25919	34166	34166					0.05840782189170568
LVNNSPAF	8	Unmodified	_LVNNSPAF_					0	0	0			REV__tr|U7T730|U7T730_FUSNUMajorcapsidproteinEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00096PE=4SV=1	REV__tr|U7T730|U7T730_FUSNUMajorcapsidproteinEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00096PE=4SV=1	MSMS	A375_MHC_IP_R1	1	431.1839294433594	2	431.226885	860.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.99	1	107.99	107.49	108.49	0								0	0	0	0.16876	1	39618	39618		6.3541	1.1234	1		+		35120	28876	25745	25920	34167	34167					0.0034154031760635917
LVNNTPLNW	9	Unmodified	_LVNNTPLNW_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1851806640625	2	535.785099	1069.55564	-0.64923	-0.00034785	0.26409	0.00014149	-0.38515	-0.00020635	535.7851504755791	96.604	0.91342	96.604	96.274	97.187	0					38	17	3	0	0	0	0.008833	1	35452	35452		160.52	95.281	1	7702500			35121	5711	25746	25921	34168	34168					0.023648588175319674
LVNNTPLNW	9	Unmodified	_LVNNTPLNW_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MATCH	A375_MHC_IP_R2	2		2	535.785099	1069.55564	-0.75043	-0.00040207	0.24702	0.00013235	-0.50341	-0.00026972	535.7851968223794	95.832	0.81277	96.582	96.144	96.957	0.75045	-0.010999	-9.7269E-06	NaN	160.52	42	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8241100			35122	5711	25746	25921							0.023648588175319674
LVNPKQRE	8	Unmodified	_LVNPKQRE_					0	0	0		ENST00000254616.10_1_11:6503514-6503556:+|nuORF	ENST00000254616.10_1_11:6503514-6503556:+|nuORF	ENST00000254616.10_1_11:6503514-6503556:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	492.68536376953125	2	492.285266	982.555979	-0.54265	-0.00026714	-0.008408	-4.1391E-06	-0.55106	-0.00027128	492.28514361079465	129.91	1.8218	130.12	129.39	131.21	0.2142					68	35	4	0	0	0	0.7773	1	51305	51305		4.756	0.22714	1	121960000			35123	10227	25747	25922	34169	34169					0.06400278537364557
LVNPLSFAF	9	Unmodified	_LVNPLSFAF_					0	0	0			REV__nc|ENSG00000173567|Q8IZF5-2|ADGRF3	REV__nc|ENSG00000173567|Q8IZF5-2|ADGRF3	MSMS	A375_MHC_IP_R1	1	504.2005615234375	2	504.28166	1006.54877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.704	1	68.704	68.204	69.204	0								0	0	0	0.15486	1	24919	24919		13.508	0.97634	1		+		35124	21232	25748	25923	34170	34170					0.045755459369502205
LVNPRCFPLP	10	Unmodified	_LVNPRCFPLP_					0	0	0			REV__OR4D9|p.G170R|1|0.1|ENSG00000172742|chr11:59515420-59515420|G/A|missense_variant	REV__OR4D9|p.G170R|1|0.1|ENSG00000172742|chr11:59515420-59515420|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	578.7207641601562	2	578.320794	1154.62703	-0.26112	-0.00015101	0.86536	0.00050046	0.60425	0.00034945	578.3205936199026	127.64	3.0413	127.9	126.8	129.84	0.26592					141	59	4	0	0	0	0.93194	1	49564	49564		2.9952	0	1	51263000	+		35125	27669	25749	25924	34171	34171					0.055906552505121
LVNQKTKSQ	9	Unmodified	_LVNQKTKSQ_					0	0	0			REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	523.7024536132812	2	523.303655	1044.59276	-0.46357	-0.00024259	-0.10116	-5.2938E-05	-0.56473	-0.00029553	523.3034537104251	118.52	2.2827	119.12	118.44	120.73	0.60909					103	44	4	0	0	0	0.69674	1	44763	44763		7.2892	1.0834	1	84574000	+		35126	18436	25750	25925	34172	34172					0.07224530363282611
LVNQWKTL	8	Unmodified	_LVNQWKTL_					0	0	0			REV__ENSG00000160218|ENST00000291574|TRAPPC10	REV__ENSG00000160218|ENST00000291574|TRAPPC10	MULTI-MSMS	A375_MHC_IP_R1	1	501.19854736328125	2	501.292559	1000.57057	-0.61452	-0.00030805	-3.2597	-0.001634	-3.8742	-0.0019421	501.792858999071	131.89	0.4045	131.89	131.58	131.98	0					12	7	2	0	0	0	0.70843	1	50792	50792		32.117	10.37	1	1475700	+		35127	20154	25751	25926	34173	34173					0.07030350685522535
LVNQWKTL	8	Unmodified	_LVNQWKTL_					0	0	0			REV__ENSG00000160218|ENST00000291574|TRAPPC10	REV__ENSG00000160218|ENST00000291574|TRAPPC10	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	501.292559	1000.57057	-0.61452	-0.00030805	-3.2597	-0.001634	-3.8742	-0.0019421	501.792858999071	131.89	0.4045	131.89	131.58	131.98	0	0	0	NaN	32.117	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1475700	+		35128	20154	25751	25926							0.07030350685522535
LVNRQIQFEI	10	Unmodified	_LVNRQIQFEI_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-MSMS	A375_MHC_IP_R2	2	420.9748840332031	3	420.575067	1258.70337	-0.2306	-9.6984E-05	0.31991	0.00013455	0.089313	3.7563E-05	420.5749717331905	36.051	0.96723	36.815	36.486	37.454	0.76338					42	18	4	0	0	0	0.69871	2	13066	13066;13097		12.873	3.6288	1	55247000			35129	9382	25752	25927	34174;34175	34174					0.08436750351506817
LVNSNCVL	8	Unmodified	_LVNSNCVL_					0	0	0		ENSG00000087095|ENST00000407008|NLK	ENSG00000087095|ENST00000407008|NLK	ENSG00000087095|ENST00000407008|NLK	MSMS	A375_MHC_IP_R1	1	431.1711730957031	2	431.228571	860.442588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.18	1	74.18	73.68	74.68	0								0	0	0	0.16876	1	27019	27019		11.114	0	1				35130	1857	25753	25928	34176	34176					0.006784670999536502
LVNSSRILIWE	11	Unmodified	_LVNSSRILIWE_					0	0	0		ENSG00000018236|ENST00000551295|CNTN1;nc|ENSG00000018236|Q12860-2|CNTN1;nc|ENSG00000018236|Q12860-3|CNTN1	ENSG00000018236|ENST00000551295|CNTN1	ENSG00000018236|ENST00000551295|CNTN1	MSMS	A375_MHC_IP_R1	1	665.262451171875	2	665.379894	1328.74524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.41	1	133.41	132.91	133.91	0								0	0	0	0.16258	1	51449	51449		5.2969	0.39987	1				35131	1045	25754	25929	34177	34177					0.09401306040058444
LVNVIDYIRRR	11	Unmodified	_LVNVIDYIRRR_					0	0	0			REV__nc|ENSG00000165891|Q96AV8-3|E2F7	REV__nc|ENSG00000165891|Q96AV8-3|E2F7	MULTI-SECPEP	A375_MHC_IP_R2	2	472.68353271484375	3	472.952649	1415.83612	-0.3773	-0.00017844	-0.78979	-0.00037353	-1.1671	-0.00055198	472.952389819097	138.6	0.25296	138.68	138.52	138.77	0.083969					6	4	2	0	0	0	1.0015	1	54349	54349		0.094841	0	1	509700	+		35132	20633	25755	25930	34178	34178					0.1448319480812188
LVPDSYFDA	9	Unmodified	_LVPDSYFDA_					0	0	0		nc|ENSG00000115423|Q9C0G6-4|DNAH6;ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000115423|Q9C0G6-3|DNAH6;ENST00000476689.5_1_2:84775422-84811380:+|nuORF	nc|ENSG00000115423|Q9C0G6-4|DNAH6	nc|ENSG00000115423|Q9C0G6-4|DNAH6	MULTI-MSMS	A375_MHC_IP_R2	2	1026.877685546875	1	1026.47785	1025.47058	0.10021	0.00010286	0.24218	0.00024859	0.34238	0.00035145	1026.4779283418497	83.912	0.46155	84.652	84.407	84.868	0.73962					15	8	2	0	0	0	0.4867	1	31920	31920		20.454	3.5113	1	1908600			35133	3308	25756	25931	34179	34179					-0.04113931438951113
LVPDSYFDA	9	Unmodified	_LVPDSYFDA_					0	0	0		nc|ENSG00000115423|Q9C0G6-4|DNAH6;ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000115423|Q9C0G6-3|DNAH6;ENST00000476689.5_1_2:84775422-84811380:+|nuORF	nc|ENSG00000115423|Q9C0G6-4|DNAH6	nc|ENSG00000115423|Q9C0G6-4|DNAH6	MULTI-MATCH	A375_MHC_IP_R1	1		1	1026.47785	1025.47058	-0.025751	-2.6433E-05	0.4611	0.00047331	0.43535	0.00044688	1026.478083668636	84.498	0.40585	84.498	84.292	84.697	0	-0.076664	7.7076E-05	NaN	20.454	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1986900			35134	3308	25756	25931							-0.04113931438951113
LVPEPPRIL	9	Unmodified	_LVPEPPRIL_					0	0	0		ENST00000494373.1_1_2:54014347-54015815:+|nuORF	ENST00000494373.1_1_2:54014347-54015815:+|nuORF	ENST00000494373.1_1_2:54014347-54015815:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	516.7025146484375	2	517.32386	1032.63317	-0.35549	-0.0001839	-0.57874	-0.0002994	-0.93423	-0.0004833	517.3232992378174	51.803	0.25415	51.803	51.625	51.879	0					6	4	2	0	0	0	0.60012	1	18426	18426		7.9102	3.5809	1	987180			35135	12691	25757	25932	34180	34180					0.11815496753706611
LVPFIHSA	8	Unmodified	_LVPFIHSA_					0	0	0		nc|ENSG00000159753|Q6F5E8-2|CARMIL2;ENSG00000159753|ENST00000334583|CARMIL2	nc|ENSG00000159753|Q6F5E8-2|CARMIL2	nc|ENSG00000159753|Q6F5E8-2|CARMIL2	MULTI-SECPEP	A375_MHC_IP_R1	1	442.6534118652344	2	442.255446	882.496338	-0.26946	-0.00011917	-1.1955	-0.00052872	-1.465	-0.00064789	442.25348143438845	36.854	0.81053	36.854	36.541	37.351	0					35	15	4	0	0	0	0.78043	1	12351	12351		40.449	14.18	1	7756700			35136	6387	25758	25933	34181	34181					0.05039007593995848
LVPGRRALP	9	Unmodified	_LVPGRRALP_					0	0	0		nc|ENSG00000115266|O95996-3|APC2;ENSG00000115266|ENST00000590469|APC2;nc|ENSG00000115266|O95996-2|APC2	nc|ENSG00000115266|O95996-3|APC2	nc|ENSG00000115266|O95996-3|APC2	MULTI-SECPEP	A375_MHC_IP_R1	1	490.2137145996094	2	489.813993	977.613434	-0.20334	-9.9598E-05	-0.29016	-0.00014212	-0.4935	-0.00024172	489.8138197261313	51.208	0.35556	51.208	51.017	51.373	0					12	6	2	0	0	0	0.48581	1	18174	18174		18.135	0	1	3214600			35137	3289	25759	25934	34182	34182					0.1237316553359733
LVPHVDCFYY	10	Unmodified	_LVPHVDCFYY_					0	0	0			REV__OR4S2|p.H174Y|1|0.16|ENSG00000174982|chr11:55651423-55651423|C/T|missense_variant	REV__OR4S2|p.H174Y|1|0.16|ENSG00000174982|chr11:55651423-55651423|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	628.0359497070312	2	628.294442	1254.57433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.441	1	94.186	93.686	94.686	0.74474								0	0	0	0.15398	1	35524	35524		7.9102	1.187	1		+		35138	27673	25760	25935	34183	34183					-0.0427734760291969
LVPHVPMV	8	Unmodified	_LVPHVPMV_					0	0	0		nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1;ENSG00000184708|ENST00000330125|EIF4ENIF1;nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1	nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1	nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1	MSMS	A375_MHC_IP_R1	1	446.3051452636719	2	446.259674	890.504795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.294	1	25.294	24.794	25.794	0								0	0	0	0.16876	1	7359	7359		2.8892	0	1				35139	8605	25761	25936	34184	34184					0.05516238238965343
LVPLYSTNQLI	11	Unmodified	_LVPLYSTNQLI_					0	0	0			REV__nc|ENSG00000268500|O15389|SIGLEC5	REV__nc|ENSG00000268500|O15389|SIGLEC5	MULTI-SECPEP	A375_MHC_IP_R1	1	421.14373779296875	3	420.911456	1259.71254	0.27923	0.00011753	-0.090733	-3.8191E-05	0.1885	7.9341E-05	421.2455071859674	107.3	0.76713	107.3	106.83	107.6	0					25	14	2	0	0	0	0.99676	1	39288	39288		2.6312	0.19645	1	1300500	+		35140	27539	25762	25937	34185	34185					0.09307098917179246
LVPMMPGI	8	Unmodified	_LVPMMPGI_					0	0	0			REV__nc|ENSG00000221957|P43632|KIR2DS4	REV__nc|ENSG00000221957|P43632|KIR2DS4	MSMS	A375_MHC_IP_R1	1	429.2911682128906	2	429.23481	856.455067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.162	1	99.162	98.662	99.662	0								0	0	0	0.16876	1	36428	36428		2.8892	0.31174	1		+		35141	27501	25763	25938	34186	34186					0.021097872386690142
LVPNVCCHVLS	11	Unmodified	_LVPNVCCHVLS_					0	0	0			REV__ENSG00000144476|ENST00000272928|ACKR3	REV__ENSG00000144476|ENST00000272928|ACKR3	MULTI-SECPEP	A375_MHC_IP_R1	1	592.1708984375	2	592.301744	1182.58893	-0.052019	-3.0811E-05	-0.27965	-0.00016564	-0.33167	-0.00019645	592.3014465982818	49.56	0.66237	49.56	49.285	49.947	0					20	12	3	0	0	0	0.92455	1	17616	17616		11.495	3.8858	1	2151200	+		35142	19426	25764	25939	34187	34187					0.004944012735677461
LVPRGDRT	8	Unmodified	_LVPRGDRT_					0	0	0			REV__ENSG00000122547|ENST00000242108|EEPD1	REV__ENSG00000122547|ENST00000242108|EEPD1	MULTI-SECPEP	A375_MHC_IP_R1	1	456.6563720703125	2	457.264333	912.514114	0.16167	7.3926E-05	-0.15249	-6.9728E-05	0.0091822	4.1987E-06	457.26408786566	115.24	1.8276	115.24	114.36	116.19	0					61	35	2	0	0	0	0.972	1	42457	42457		2.3027	0	1	4145300	+		35143	18213	25765	25940	34188	34188					0.054357228488470355
LVPRGDRT	8	Unmodified	_LVPRGDRT_					0	0	0			REV__ENSG00000122547|ENST00000242108|EEPD1	REV__ENSG00000122547|ENST00000242108|EEPD1	MULTI-SECPEP	A375_MHC_IP_R2	2	456.6553955078125	2	457.264333	912.514114	-0.093361	-4.269E-05	-0.13836	-6.3268E-05	-0.23172	-0.00010596	457.2640975282098	114.84	2.2818	115.53	114.36	116.64	0.68999					72	44	2	0	0	0	0.972	1	43488	43488		5.2307	0	1	3931300	+		35144	18213	25765	25940	34189	34189					0.054357228488470355
LVPRRAGPL	9	Unmodified	_LVPRRAGPL_					0	0	0			REV__ENST00000530934.5_1_11:67160948-67163588:+|nuORF	REV__ENST00000530934.5_1_11:67160948-67163588:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	490.2135925292969	2	489.813993	977.613434	-0.74389	-0.00036437	-0.023797	-1.1656E-05	-0.76769	-0.00037603	489.81402741472084	50.209	0.4558	50.963	50.753	51.209	0.75406					14	8	2	0	0	0	0.62767	1	18901	18901		23.148	2.2772	1	2498500	+		35145	25845	25766	25941	34190	34190					0.1237316553359733
LVPRRGYQ	8	Unmodified	_LVPRRGYQ_					0	0	0		nc|ENSG00000066827|Q9P243-3|ZFAT;nc|ENSG00000066827|Q9P243-2|ZFAT;ENSG00000066827|ENST00000377838|ZFAT;nc|ENSG00000066827|Q9P243-4|ZFAT	nc|ENSG00000066827|Q9P243-3|ZFAT	nc|ENSG00000066827|Q9P243-3|ZFAT	MULTI-SECPEP	A375_MHC_IP_R2	2	494.6229248046875	2	494.787976	987.561398	-0.85241	-0.00042176	-1.2097	-0.00059853	-2.0621	-0.0010203	494.7871075111048	33.454	0.30567	34.206	33.992	34.298	0.75225					9	5	2	0	0	0	0.94479	1	11892	11892		13.508	4.9146	1	1343500			35146	1421	25767	25942	34191	34191					0.06712002119843419
LVPRRGYQ	8	Unmodified	_LVPRRGYQ_					0	0	0		nc|ENSG00000066827|Q9P243-3|ZFAT;nc|ENSG00000066827|Q9P243-2|ZFAT;ENSG00000066827|ENST00000377838|ZFAT;nc|ENSG00000066827|Q9P243-4|ZFAT	nc|ENSG00000066827|Q9P243-3|ZFAT	nc|ENSG00000066827|Q9P243-3|ZFAT	MULTI-MATCH	A375_MHC_IP_R1	1		2	494.787976	987.561398	-0.40183	-0.00019882	-1.3107	-0.00064854	-1.7126	-0.00084736	494.7873266434558	34.194	0.3019	34.194	34.001	34.303	0	-0.0058773	-1.0675E-05	NaN	13.508	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1819000			35147	1421	25767	25942							0.06712002119843419
LVPSIPTTA	9	Unmodified	_LVPSIPTTA_					0	0	0		ENST00000391834.6_1_19:50372434-50372704:-|nuORF	ENST00000391834.6_1_19:50372434-50372704:-|nuORF	ENST00000391834.6_1_19:50372434-50372704:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	902.88232421875	1	898.52441	897.517133	-0.21848	-0.00019631	-0.056394	-5.0671E-05	-0.27487	-0.00024698	898.5243144467509	95.741	2.3795	95.741	95.364	97.743	0					100	46	5	0	0	0	0.46038	1	35142	35142		21.747	0	1	194930000			35148	11409	25768	25943	34192	34192					0.06427553182970769
LVPSIPTTA	9	Unmodified	_LVPSIPTTA_					0	0	0		ENST00000391834.6_1_19:50372434-50372704:-|nuORF	ENST00000391834.6_1_19:50372434-50372704:-|nuORF	ENST00000391834.6_1_19:50372434-50372704:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	898.52441	897.517133	-0.17767	-0.00015964	-0.063314	-5.6889E-05	-0.24098	-0.00021653	898.5243461970792	95.009	2.2337	95.759	95.33	97.564	0.75045	0.0089862	-4.0228E-06	NaN	21.747	113	43	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206720000			35149	11409	25768	25943							0.06427553182970769
LVQGHLLRWVM	11	Unmodified	_LVQGHLLRWVM_					0	0	0			REV__nc|ENSG00000165046|Q2VYF4-3|LETM2	REV__nc|ENSG00000165046|Q2VYF4-3|LETM2	MULTI-MSMS	A375_MHC_IP_R1	1	451.6605224609375	3	451.260425	1350.75945	-0.42837	-0.0001933	0.65098	0.00029376	0.22262	0.00010046	451.260667855659	133.69	0.71365	133.69	133.3	134.02	0					18	13	2	0	0	0	0.73795	1	51594	51594		1.3296	0.70282	1	2453400	+		35150	20543	25769	25944	34193	34193					0.09809679987347408
LVQGHLLRWVM	11	Unmodified	_LVQGHLLRWVM_					0	0	0			REV__nc|ENSG00000165046|Q2VYF4-3|LETM2	REV__nc|ENSG00000165046|Q2VYF4-3|LETM2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	451.260425	1350.75945	-0.42837	-0.0001933	0.65098	0.00029376	0.22262	0.00010046	451.260667855659	133.69	0.71365	133.69	133.3	134.02	0	-0.070984	-4.288E-05	NaN	1.3296	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2453400	+		35151	20543	25769	25944							0.09809679987347408
LVQGHLLRWVM	11	Unmodified	_LVQGHLLRWVM_					0	0	0			REV__nc|ENSG00000165046|Q2VYF4-3|LETM2	REV__nc|ENSG00000165046|Q2VYF4-3|LETM2	MULTI-MATCH	A375_MHC_IP_R2	2		3	451.260425	1350.75945	-0.19481	-8.7909E-05	0.75945	0.00034271	0.56464	0.0002548	451.5951112125093	133.66	0.66008	133.83	133.35	134.01	0.16487	0.070984	0.00010396	NaN	1.3296	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2177100	+		35152	20543	25769	25944							0.09809679987347408
LVQHKLPL	8	Unmodified	_LVQHKLPL_					0	0	0		WDR91|p.P229L|1|0.26|ENSG00000105875|chr7:135205967-135205967|G/A|missense_variant	WDR91|p.P229L|1|0.26|ENSG00000105875|chr7:135205967-135205967|G/A|missense_variant	WDR91|p.P229L|1|0.26|ENSG00000105875|chr7:135205967-135205967|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	474.36065673828125	2	474.30547	946.596387	-0.80649	-0.00038252	0.15027	7.1273E-05	-0.65623	-0.00031125	474.3055680152242	49.313	0.50482	50.071	49.843	50.348	0.75737					12	9	2	0	0	0	0.7758	1	18635	18635		10.183	0	1	2041200			35153	30162	25770	25945	34194	34194					0.12095244927797921
LVQKDFTLF	9	Unmodified	_LVQKDFTLF_					0	0	0			REV__nc|ENSG00000096093|Q5JVL4-3|EFHC1	REV__nc|ENSG00000096093|Q5JVL4-3|EFHC1	MULTI-SECPEP	A375_MHC_IP_R1	1	370.2673034667969	3	370.877975	1109.6121	0.31382	0.00011639	2.4893	0.00092322	2.8031	0.0010396	371.2125660889256	43.995	0.25402	43.995	43.859	44.113	0					7	4	2	0	0	0	0.78348	1	15321	15321		2.4985	0.41248	1	284670	+		35154	17006	25771	25946	34195	34195					0.061674866541807205
LVQPHAAL	8	Unmodified	_LVQPHAAL_					0	0	0			REV__nc|ENSG00000020129|Q9UBB6-2|NCDN	REV__nc|ENSG00000020129|Q9UBB6-2|NCDN	MULTI-SECPEP	A375_MHC_IP_R2	2	425.1526794433594	2	424.75307	847.491587	-0.6818	-0.0002896	0.24153	0.00010259	-0.44028	-0.00018701	424.75309996141743	53.594	0.40889	54.345	54.097	54.505	0.75105					12	7	2	0	0	0	0.90224	1	20286	20286		26.341	3.1929	1	1948700	+		35155	16261	25772	25947	34196	34196					0.061741234512169285
LVQPIQAH	8	Unmodified	_LVQPIQAH_					0	0	0			REV__ENST00000394321.9_1_19:7592406-7592778:+|nuORF	REV__ENST00000394321.9_1_19:7592406-7592778:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	453.6639099121094	2	453.263802	904.513051	-0.035801	-1.6227E-05	-0.59273	-0.00026866	-0.62853	-0.00028489	453.2636341233841	35.476	0.66328	35.476	35.064	35.727	0					28	12	3	0	0	0	0.73517	1	11773	11773		42.968	16.627	1	6018700	+		35156	24305	25773	25948	34197	34197					0.05697508479931912
LVQPIQAH	8	Unmodified	_LVQPIQAH_					0	0	0			REV__ENST00000394321.9_1_19:7592406-7592778:+|nuORF	REV__ENST00000394321.9_1_19:7592406-7592778:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	454.1333312988281	2	453.263802	904.513051	-0.43763	-0.00019836	-0.6079	-0.00027554	-1.0455	-0.0004739	453.2636345283188	34.707	0.55559	35.47	35.223	35.778	0.76338					26	10	3	0	0	0	0.72109	1	12616	12616		28.173	5.0248	1	5693400	+		35157	24305	25773	25948	34198	34198					0.05697508479931912
LVQPIQAH	8	Unmodified	_LVQPIQAH_					0	0	0			REV__ENST00000394321.9_1_19:7592406-7592778:+|nuORF	REV__ENST00000394321.9_1_19:7592406-7592778:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	453.66351318359375	2	453.263802	904.513051	-0.43763	-0.00019836	-0.6079	-0.00027554	-1.0455	-0.0004739	453.2636345283188	34.707	0.55559	35.47	35.223	35.778	0.76338					26	10	3	0	0	0	0.73517	1	12541	12541		42.968	8.7807	1	5693400	+		35158	24305	25773	25948	34199	34199					0.05697508479931912
LVQPTRHPV	9	Unmodified	_LVQPTRHPV_					0	0	0			REV__ENST00000467201.5_1_7:100174858-100176198:-|nuORF	REV__ENST00000467201.5_1_7:100174858-100176198:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	524.1400146484375	2	523.808908	1045.60326	-0.33489	-0.00017542	-1.8485	-0.00096825	-2.1834	-0.0011437	523.8080846593515	82.139	0.55835	82.139	81.911	82.469	0					15	10	2	0	0	0	0.74651	1	30103	30103		13.508	0	1	4901900	+		35159	25053	25774	25949	34200	34200					0.08228557808365622
LVQQIRILLLG	11	Unmodified	_LVQQIRILLLG_					0	0	0		ENSG00000137965|ENST00000370747|IFI44;ENST00000467790.5_1_1:79115880-79120915:+|nuORF;ENST00000495254.5_1_1:79119932-79128426:+|nuORF	ENSG00000137965|ENST00000370747|IFI44	ENSG00000137965|ENST00000370747|IFI44	MULTI-SECPEP	A375_MHC_IP_R2	2	422.1516418457031	3	422.614974	1264.82309	-0.091729	-3.8766E-05	0.54164	0.0002289	0.44991	0.00019014	422.9495477420537	102.01	0.25284	102.77	102.57	102.82	0.76428					5	4	2	0	0	0	1.0014	1	38591	38591		0.094841	0	1	334090			35160	4940	25775	25950	34201	34201					0.20127363696065004
LVQQLRRLCQ	10	Unmodified	_LVQQLRRLCQ_					0	0	0			REV__nc|ENSG00000165801|Q8TER5-4|ARHGEF40	REV__nc|ENSG00000165801|Q8TER5-4|ARHGEF40	MULTI-SECPEP	A375_MHC_IP_R2	2	628.7095947265625	2	628.866431	1255.71831	-0.75401	-0.00047417	2.9543	0.0018578	2.2003	0.0013837	628.8691566245002	88.403	0.20207	89.134	89.026	89.228	0.7318					5	3	2	0	0	0	0.91909	1	33652	33652		5.7319	2.4505	1	596160	+		35161	20622	25776	25951	34202	34202					0.10067918947879662
LVQRKVLRPLR	11	Unmodified	_LVQRKVLRPLR_					0	0	0		ENST00000475818.5_1_3:13522761-13543460:+|nuORF;ENSG00000163517|ENST00000295757|HDAC11	ENST00000475818.5_1_3:13522761-13543460:+|nuORF	ENST00000475818.5_1_3:13522761-13543460:+|nuORF	MSMS	A375_MHC_IP_R2	2	689.463134765625	2	689.461887	1376.90922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.928	1	51.682	51.182	52.182	0.75406								0	0	0	0.16353	1	19158	19158		0.35063	0	1				35162	6675	25777	25952	34203	34203					0.23584368321439797
LVQRRKQLGWF	11	Unmodified	_LVQRRKQLGWF_					0	0	0		ENSG00000226124|ENST00000420128|FTCDNL1;nc|ENSG00000226124|E5RQL4|FTCDNL1	ENSG00000226124|ENST00000420128|FTCDNL1	ENSG00000226124|ENST00000420128|FTCDNL1	MULTI-SECPEP	A375_MHC_IP_R1	1	715.2542724609375	2	715.922595	1429.83064	-0.77414	-0.00055423	-0.71856	-0.00051443	-1.4927	-0.0010687	715.92241916637	90.382	0.3554	90.382	90.235	90.59	0					10	6	2	0	0	0	0.99606	1	33279	33279		3.2813	2.088	1	1673300			35163	9702	25778	25953	34204	34204					0.13291516016352034
LVQSVLRIW	9	Unmodified	_LVQSVLRIW_					0	0	0		ERAL1|p.V18I|1|0.58|ENSG00000132591|chr17:28855086-28855086|G/A|missense_variant	ERAL1|p.V18I|1|0.58|ENSG00000132591|chr17:28855086-28855086|G/A|missense_variant	ERAL1|p.V18I|1|0.58|ENSG00000132591|chr17:28855086-28855086|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	372.6099853515625	3	371.897481	1112.67061	0.25318	9.4157E-05	-3.4908	-0.0012982	-3.2376	-0.0012041	371.8957952160629	34.618	0.40728	35.382	35.068	35.475	0.76338					9	7	2	0	0	0	0.81275	1	12412	12412		2.4985	2.317	1	1056000			35164	13953	25779	25954	34205	34205					0.11878588019317249
LVQTTDYIY	9	Unmodified	_LVQTTDYIY_					0	0	0		nc|ENSG00000086475|P49903-2|SEPHS1;nc|ENSG00000086475|P49903-4|SEPHS1;nc|ENSG00000086475|P49903-3|SEPHS1;ENSG00000086475|ENST00000327347|SEPHS1	nc|ENSG00000086475|P49903-2|SEPHS1	nc|ENSG00000086475|P49903-2|SEPHS1	MULTI-MSMS	A375_MHC_IP_R1	1	558.6849975585938	2	558.284597	1114.55464	-0.40446	-0.00022581	0.24119	0.00013465	-0.16328	-9.1155E-05	558.284704054696	54.389	0.7094	54.389	54.163	54.873	0					22	13	3	0	0	0	0.32899	1	19441	19441		28.487	3.0875	1	4258100			35165	1836	25780	25955	34206	34206					0.0019459965794794698
LVQTTDYIY	9	Unmodified	_LVQTTDYIY_					0	0	0		nc|ENSG00000086475|P49903-2|SEPHS1;nc|ENSG00000086475|P49903-4|SEPHS1;nc|ENSG00000086475|P49903-3|SEPHS1;ENSG00000086475|ENST00000327347|SEPHS1	nc|ENSG00000086475|P49903-2|SEPHS1	nc|ENSG00000086475|P49903-2|SEPHS1	MULTI-MSMS	A375_MHC_IP_R2	2	558.6842651367188	2	558.284597	1114.55464	-1.1785	-0.00065795	0.3264	0.00018223	-0.85211	-0.00047572	558.2848072896555	53.748	0.46318	54.499	54.249	54.712	0.75105					15	8	2	0	0	0	0.32899	1	20295	20295		28.487	5.3384	1	4818200			35166	1836	25780	25955	34207	34207					0.0019459965794794698
LVQTTDYIY	9	Unmodified	_LVQTTDYIY_					0	0	0		nc|ENSG00000086475|P49903-2|SEPHS1;nc|ENSG00000086475|P49903-4|SEPHS1;nc|ENSG00000086475|P49903-3|SEPHS1;ENSG00000086475|ENST00000327347|SEPHS1	nc|ENSG00000086475|P49903-2|SEPHS1	nc|ENSG00000086475|P49903-2|SEPHS1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	558.284597	1114.55464	-0.40446	-0.00022581	0.24119	0.00013465	-0.16328	-9.1155E-05	558.284704054696	54.389	0.7094	54.389	54.163	54.873	0	-0.05473	-5.1727E-05	NaN	28.487	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4258100			35167	1836	25780	25955							0.0019459965794794698
LVQTTDYIY	9	Unmodified	_LVQTTDYIY_					0	0	0		nc|ENSG00000086475|P49903-2|SEPHS1;nc|ENSG00000086475|P49903-4|SEPHS1;nc|ENSG00000086475|P49903-3|SEPHS1;ENSG00000086475|ENST00000327347|SEPHS1	nc|ENSG00000086475|P49903-2|SEPHS1	nc|ENSG00000086475|P49903-2|SEPHS1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	558.284597	1114.55464	-1.1785	-0.00065795	0.3264	0.00018223	-0.85211	-0.00047572	558.2848072896555	53.748	0.46318	54.499	54.249	54.712	0.75105	0.05473	4.3423E-05	NaN	28.487	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4818200			35168	1836	25780	25955							0.0019459965794794698
LVQYRWPRWLR	11	Unmodified	_LVQYRWPRWLR_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MSMS	A375_MHC_IP_R1	1	786.9485473632812	2	786.949144	1571.88374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.26	1	105.26	104.76	105.76	0								0	0	0	0.16334	1	38644	38644		1.3295	0	1				35169	2385	25781	25956	34208	34208					0.12066893799010359
LVRALPKTY	9	Unmodified	_LVRALPKTY_					0	0	0		ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;RYR2|p.V3402Sfs*10|1|0.5|ENSG00000198626|chr1:237709538-237709539|-/A|frameshift_variant	ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-SECPEP	A375_MHC_IP_R2	2	354.6107482910156	3	354.221965	1059.64407	-0.74849	-0.00026513	0.53806	0.00019059	-0.21043	-7.4538E-05	354.2221312857163	33.815	0.35427	34.568	34.348	34.702	0.75225					9	6	2	0	0	0	0.79429	1	12138	12138		7.1017	0.90987	1	1415600			35170	9292	25782	25957	34209	34209					0.11662899127986748
LVRCGVYSSLY	11	Unmodified	_LVRCGVYSSLY_					0	0	0		ENST00000267859.7_1_15:59955189-59955258:-|nuORF	ENST00000267859.7_1_15:59955189-59955258:-|nuORF	ENST00000267859.7_1_15:59955189-59955258:-|nuORF	MSMS	A375_MHC_IP_R1	1	630.3017578125	2	630.326273	1258.63799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.58	1	106.58	106.08	107.08	0								0	0	0	0.16179	1	39119	39119		9.3831	1.473	1				35171	10359	25783	25958	34210	34210					0.019020128341708187
LVREQLKL	8	Unmodified	_LVREQLKL_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	A375_MHC_IP_R1	1	500.22186279296875	2	499.821484	997.628415	-0.17476	-8.7351E-05	0.57629	0.00028804	0.40153	0.00020069	499.8218880470381	72.071	0.40442	72.071	71.917	72.321	0					13	7	3	0	0	0	0.70629	1	26231	26231		32.786	1.5173	1	1527200	+		35172	22284	25784	25959	34211	34211					0.12950612610927692
LVREQLKL	8	Unmodified	_LVREQLKL_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	499.821484	997.628415	-0.17476	-8.7351E-05	0.57629	0.00028804	0.40153	0.00020069	499.8218880470381	72.071	0.40442	72.071	71.917	72.321	0	0.15996	0.00034445	NaN	32.786	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1527200	+		35173	22284	25784	25959							0.12950612610927692
LVRFRYKKKN	10	Unmodified	_LVRFRYKKKN_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	A375_MHC_IP_R1	1	675.9680786132812	2	676.419688	1350.82482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.294	1	90.294	89.794	90.794	0								0	0	0	0.15591	1	33182	33182		1.6526	0.32309	1		+		35174	19932	25785	25960	34212	34212					0.16344417504683406
LVRFTSETF	9	Unmodified	_LVRFTSETF_					0	0	0		RHOH|p.E31K|1|0.59|ENSG00000168421|chr4:40243477-40243477|G/A|missense_variant;ENSG00000168421|ENST00000381799|RHOH	RHOH|p.E31K|1|0.59|ENSG00000168421|chr4:40243477-40243477|G/A|missense_variant	RHOH|p.E31K|1|0.59|ENSG00000168421|chr4:40243477-40243477|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	367.12396240234375	3	367.197596	1098.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.157	1	52.157	51.657	52.657	0								0	0	0	0.15071	1	18538	18538		20.415	7.3721	1				35175	7300	25786	25961	34213	34213					0.025617256147143053
LVRHYMRLSLS	11	Unmodified	_LVRHYMRLSLS_					0	0	0			REV__nc|ENSG00000181381|Q5H9U9-2|DDX60L	REV__nc|ENSG00000181381|Q5H9U9-2|DDX60L	MULTI-MSMS	A375_MHC_IP_R2	2	458.99249267578125	3	458.927335	1373.76017	-0.68334	-0.0003136	0.72348	0.00033203	0.04014	1.8421E-05	458.9269726704076	57.497	0.25642	58.246	58.17	58.427	0.74894					6	4	2	0	0	0	0.73078	1	21781	21781		4.1166	1.2733	1	1201100	+		35176	15981	25787	25962	34214	34214					0.08824474636389823
LVRKGNVQ	8	Unmodified	_LVRKGNVQ_					0	0	0			REV__nc|ENSG00000100167|Q9UH03-2|SEPTIN3	REV__nc|ENSG00000100167|Q9UH03-2|SEPTIN3	MULTI-SECPEP	A375_MHC_IP_R2	2	457.6824645996094	2	457.282526	912.550499	-0.17383	-7.949E-05	0.21986	0.00010054	0.04603	2.1049E-05	457.28250076706433	134.79	2.3491	134.93	134.7	137.05	0.13901					110	45	5	0	0	0	0.972	1	53396	53396		10.183	1.5901	1	114000000	+		35177	17055	25788	25963	34215	34215					0.09072599745559273
LVRKLSIPVQ	10	Unmodified	_LVRKLSIPVQ_					0	0	0			REV__ENST00000237654.8_1_4:77968731-77968890:-|nuORF	REV__ENST00000237654.8_1_4:77968731-77968890:-|nuORF	MSMS	A375_MHC_IP_R1	1	576.780029296875	2	576.876791	1151.73903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.19	1	110.19	109.69	110.69	0								0	0	0	0.15308	1	40406	40406		10.824	3.5347	1		+		35178	23088	25789	25964	34216	34216					0.16922832599175308
LVRKRRFQLRR	11	Unmodified	_LVRKRRFQLRR_					0	0	0		ENSG00000230358|ENST00000424157|SPDYE21;nc|ENSG00000136206|Q8NFV5|SPDYE1;ENSG00000136206|ENST00000693451|SPDYE1	ENSG00000230358|ENST00000424157|SPDYE21	ENSG00000230358|ENST00000424157|SPDYE21	MSMS	A375_MHC_IP_R1	1	764.4489135742188	2	764.494585	1526.97462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.53	1	109.53	109.03	110.03	0								0	0	0	0.1636	1	40173	40173		0	0	1				35179	9716	25790	25965	34217	34217					0.23220782567136666
LVRKRRFQLRR	11	Unmodified	_LVRKRRFQLRR_					0	0	0		ENSG00000230358|ENST00000424157|SPDYE21;nc|ENSG00000136206|Q8NFV5|SPDYE1;ENSG00000136206|ENST00000693451|SPDYE1	ENSG00000230358|ENST00000424157|SPDYE21	ENSG00000230358|ENST00000424157|SPDYE21	MSMS	A375_MHC_IP_R2	2	764.5541381835938	2	764.494585	1526.97462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.988	1	79.733	79.233	80.233	0.74474								0	0	0	0.16353	1	29975	29975		0.35063	0.043601	1				35180	9716	25790	25965	34218	34218					0.23220782567136666
LVRLETMFRF	10	Unmodified	_LVRLETMFRF_					0	0	0		ENSG00000014216|ENST00000279247|CAPN1;ENST00000530567.1_1_11:64977449-64978754:+|nuORF;ENST00000528165.5_1_11:64977175-64978433:+|nuORF	ENSG00000014216|ENST00000279247|CAPN1	ENSG00000014216|ENST00000279247|CAPN1	MSMS	A375_MHC_IP_R2	2	437.94586181640625	3	437.912914	1310.71691	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.709	1	35.472	34.972	35.972	0.76338								0	0	0	0.15308	1	12545	12545		6.1918	0	1				35181	1030	25791	25966	34219	34219					0.07398284859073101
LVRLLKRLQV	10	Unmodified	_LVRLLKRLQV_					0	0	0			REV__nc|ENSG00000196277|Q14831-5|GRM7	REV__nc|ENSG00000196277|Q14831-5|GRM7	MSMS	A375_MHC_IP_R2	2	619.425537109375	2	619.426982	1236.83941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.457	1	76.198	75.698	76.698	0.74052								0	0	0	0.15628	1	28645	28645		0.45834	0	1		+		35182	22178	25792	25967	34220	34220					0.23046489652824675
LVRLLREELQL	11	Unmodified	_LVRLLREELQL_					0	0	0		ENST00000581764.1_1_17:61907183-61907321:+|nuORF	ENST00000581764.1_1_17:61907183-61907321:+|nuORF	ENST00000581764.1_1_17:61907183-61907321:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	461.688720703125	3	461.289038	1380.84528	-0.20618	-9.5109E-05	-0.21314	-9.832E-05	-0.41932	-0.00019343	461.2890201945065	59.707	0.76258	59.707	59.397	60.159	0					36	14	4	0	0	0	0.73807	1	21459	21459		1.2148	1.2148	1	14645000			35183	13687	25793	25968	34221	34221					0.17009543373842462
LVRLLREELQL	11	Unmodified	_LVRLLREELQL_					0	0	0		ENST00000581764.1_1_17:61907183-61907321:+|nuORF	ENST00000581764.1_1_17:61907183-61907321:+|nuORF	ENST00000581764.1_1_17:61907183-61907321:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	461.6884765625	3	461.289038	1380.84528	-0.8243	-0.00038024	-0.078851	-3.6373E-05	-0.90315	-0.00041661	461.2889671943133	58.767	0.5071	59.514	59.235	59.742	0.74714					27	9	3	0	0	0	0.73807	1	22217	22217		1.2148	1.2148	1	17036000			35184	13687	25793	25968	34222	34222					0.17009543373842462
LVRLLREELQL	11	Unmodified	_LVRLLREELQL_					0	0	0		ENST00000581764.1_1_17:61907183-61907321:+|nuORF	ENST00000581764.1_1_17:61907183-61907321:+|nuORF	ENST00000581764.1_1_17:61907183-61907321:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	461.289038	1380.84528	-0.20618	-9.5109E-05	-0.21314	-9.832E-05	-0.41932	-0.00019343	461.2890201945065	59.707	0.76258	59.707	59.397	60.159	0	0.096371	-0.0001372	NaN	1.2148	36	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14645000			35185	13687	25793	25968							0.17009543373842462
LVRLLREELQL	11	Unmodified	_LVRLLREELQL_					0	0	0		ENST00000581764.1_1_17:61907183-61907321:+|nuORF	ENST00000581764.1_1_17:61907183-61907321:+|nuORF	ENST00000581764.1_1_17:61907183-61907321:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	461.289038	1380.84528	-0.8243	-0.00038024	-0.078851	-3.6373E-05	-0.90315	-0.00041661	461.2889671943133	58.767	0.5071	59.514	59.235	59.742	0.74714	-0.096371	4.8641E-05	NaN	1.2148	27	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17036000			35186	13687	25793	25968							0.17009543373842462
LVRMKSFLEV	10	Unmodified	_LVRMKSFLEV_					0	0	0			REV__nc|ENSG00000078674|Q15154-4|PCM1	REV__nc|ENSG00000078674|Q15154-4|PCM1	MULTI-SECPEP	A375_MHC_IP_R2	2	611.7247314453125	2	611.354834	1220.69511	-0.53474	-0.00032692	1.9197	0.0011736	1.385	0.00084671	611.3558319972159	127.47	0.50744	127.74	127.41	127.92	0.26593					22	9	3	0	0	0	0.93799	1	50028	50028		3.5965	1.3137	1	24397000	+		35187	16714	25794	25969	34223	34223					0.09359480110538243
LVRMWRVRWRY	11	Unmodified	_LVRMWRVRWRY_					0	0	0		ENSG00000184345|ENST00000333127|IQCF2	ENSG00000184345|ENST00000333127|IQCF2	ENSG00000184345|ENST00000333127|IQCF2	MSMS	A375_MHC_IP_R1	1	540.9439697265625	3	540.97339	1619.89834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.138	1	86.138	85.638	86.638	0								0	0	0	0.16358	1	31577	31577		0.094841	0	1				35188	8573	25795	25970	34224	34224					0.11318642675519186
LVRNATIIV	9	Unmodified	_LVRNATIIV_					0	0	0			REV__ENSG00000145555|ENST00000513610|MYO10	REV__ENSG00000145555|ENST00000513610|MYO10	MULTI-SECPEP	A375_MHC_IP_R1	1	500.22137451171875	2	499.821484	997.628415	-0.20611	-0.00010302	-0.1921	-9.6015E-05	-0.39821	-0.00019903	499.82135419677564	42.659	0.55613	42.659	42.386	42.942	0					21	10	3	0	0	0	0.46045	1	14770	14770		36.127	0	1	4327900	+		35189	19480	25796	25971	34225	34225					0.1295061261093906
LVRNATIIV	9	Unmodified	_LVRNATIIV_					0	0	0			REV__ENSG00000145555|ENST00000513610|MYO10	REV__ENSG00000145555|ENST00000513610|MYO10	MULTI-SECPEP	A375_MHC_IP_R2	2	500.220947265625	2	499.821484	997.628415	-0.65562	-0.00032769	0.076011	3.7992E-05	-0.57961	-0.0002897	499.8214949303867	41.571	0.40646	42.346	42.149	42.555	0.77451					16	7	3	0	0	0	0.60917	1	15446	15446		25.399	7.253	1	3589100	+		35190	19480	25796	25971	34226	34226					0.1295061261093906
LVRNQLLSH	9	Unmodified	_LVRNQLLSH_					0	0	0		ENST00000487863.5_1_19:53057832-53058279:+|nuORF	ENST00000487863.5_1_19:53057832-53058279:+|nuORF	ENST00000487863.5_1_19:53057832-53058279:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1079.7965087890625	1	1079.632	1078.62473	0.53927	0.00058221	-2.6988	-0.0029137	-2.1595	-0.0023315	1079.6306976996486	115.26	1.0652	115.26	114.41	115.48	0					28	20	2	0	0	0	0.76187	1	42091	42091		3.9444	0	1	5724600			35191	12602	25797	25972	34227	34227					0.0885594283708997
LVRPGTALEL	10	Unmodified	_LVRPGTALEL_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	MULTI-SECPEP	A375_MHC_IP_R1	1	534.7321166992188	2	534.824224	1067.63389	-0.59795	-0.0003198	-0.69864	-0.00037365	-1.2966	-0.00069345	535.3251119211877	70.489	0.25606	70.489	70.341	70.597	0					7	4	2	0	0	0	0.93406	1	25588	25588		6.1918	0	1	606720			35192	2060	25798	25973	34228	34228					0.10278291402732975
LVRPLSRSKGK	11	Unmodified	_LVRPLSRSKGK_					0	0	0			REV__ENSG00000165757|ENST00000375377|JCAD	REV__ENSG00000165757|ENST00000375377|JCAD	MSMS	A375_MHC_IP_R2	2	414.29705810546875	3	414.266456	1239.77754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.646	1	67.383	66.883	67.883	0.73631								0	0	0	0.16124	1	25250	25250		6.6235	1.2207	1		+		35193	20621	25799	25974	34229	34229					0.167241382336897
LVRPRLSRL	9	Unmodified	_LVRPRLSRL_					0	0	0			REV__ENST00000404569.5_3_22:39900474-39905499:+|nuORF	REV__ENST00000404569.5_3_22:39900474-39905499:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	370.9259033203125	3	370.580375	1108.7193	-0.014056	-5.209E-06	-0.18296	-6.7802E-05	-0.19702	-7.3011E-05	370.5802857001737	38.4	0.76447	39.174	38.843	39.607	0.77451					39	14	4	0	0	0	0.70411	1	14079	14079		6.6304	2.4409	1	19364000	+		35194	24428	25800	25975	34230	34230					0.16928501379061345
LVRQSVELRRQ	11	Unmodified	_LVRQSVELRRQ_					0	0	0		ENSG00000058453|ENST00000375541|CROCC	ENSG00000058453|ENST00000375541|CROCC	ENSG00000058453|ENST00000375541|CROCC	MSMS	A375_MHC_IP_R2	2	692.7777099609375	2	692.412592	1382.81063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.54	1	114.25	113.75	114.75	0.70985								0	0	0	0.16258	1	42811	42811		5.2969	0.39987	1				35195	1293	25801	25976	34231	34231					0.13453720285724557
LVRRRKRRFFR	11	Unmodified	_LVRRRKRRFFR_					0	0	0		RGS7BP|p.G250R|1|0.55|ENSG00000186479|chr5:64609226-64609226|G/A|missense_variant	RGS7BP|p.G250R|1|0.55|ENSG00000186479|chr5:64609226-64609226|G/A|missense_variant	RGS7BP|p.G250R|1|0.55|ENSG00000186479|chr5:64609226-64609226|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	795.47900390625	2	795.508026	1589.0015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.47	1	127.73	127.23	128.23	0.26593								0	0	0	0.16353	1	49996	49996		0.35063	0	1				35196	29075	25802	25977	34232	34232					0.23055891178296406
LVRRYDVFYRK	11	Unmodified	_LVRRYDVFYRK_					0	0	0			REV__ENST00000466099.1_1_20:60768659-60775121:+|nuORF	REV__ENST00000466099.1_1_20:60768659-60775121:+|nuORF	MSMS	A375_MHC_IP_R2	2	505.69146728515625	3	505.624532	1513.85177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.75	1	131.94	131.44	132.44	0.18953								0	0	0	0.16313	1	51826	51826		2.4348	1.9288	1		+		35197	17146	25803	25978	34233	34233					0.11539481325212364
LVRSTHQA	8	Unmodified	_LVRSTHQA_					0	0	0			REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B	REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B	MULTI-MSMS	A375_MHC_IP_R2	2	456.6560974121094	2	456.256508	910.498464	-0.088559	-4.0406E-05	1.8852	0.00086013	1.7966	0.00081972	456.25607726953007	116.18	1.7806	116.84	116.16	117.94	0.65962					73	34	3	0	0	0	0.77717	1	43732	43732		5.2307	1.2863	1	20206000	+		35198	22126	25804	25979	34234	34234					0.03963436331787307
LVRSTHQA	8	Unmodified	_LVRSTHQA_					0	0	0			REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B	REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B	MULTI-SECPEP	A375_MHC_IP_R2	2	456.6563720703125	2	456.256508	910.498464	-0.040184	-1.8334E-05	-0.12445	-5.6781E-05	-0.16463	-7.5115E-05	456.2563881595968	113.64	3.0478	114.35	113.46	116.51	0.70985					137	59	4	0	0	0	0.972	1	42868	42868		3.9444	0	1	31151000	+		35199	22126	25804	25979	34235	34235					0.03963436331787307
LVRSTHQA	8	Unmodified	_LVRSTHQA_					0	0	0			REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B	REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	456.256508	910.498464	0.02086	9.5177E-06	0.013011	5.9365E-06	0.033872	1.5454E-05	456.25640721189586	117.06	1.6747	117.06	116.24	117.92	0	0.11268	-0.00013322	NaN	5.2307	44	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10394000	+		35200	22126	25804	25979							0.03963436331787307
LVRSTKTIPD	10	Unmodified	_LVRSTKTIPD_					0	0	0			REV__ENSG00000138078|ENST00000409411|PREPL	REV__ENSG00000138078|ENST00000409411|PREPL	MULTI-MSMS	A375_MHC_IP_R1	1	377.2732238769531	3	377.224034	1128.65027	0.15653	5.9047E-05	-0.67962	-0.00025637	-0.52309	-0.00019732	377.2237942941766	32.957	0.70646	32.957	32.383	33.09	0					18	13	3	0	0	0	0.70741	1	10495	10495		8.9762	0.53194	1	2190100	+		35201	19060	25805	25980	34236	34236					0.09109372568855179
LVRSTKTIPD	10	Unmodified	_LVRSTKTIPD_					0	0	0			REV__ENSG00000138078|ENST00000409411|PREPL	REV__ENSG00000138078|ENST00000409411|PREPL	MSMS	A375_MHC_IP_R2	2	377.2733154296875	3	377.224034	1128.65027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.701	1	32.438	31.938	32.938	0.73692								0	0	0	0.15245	1	11224	11224		12.873	4.1272	1		+		35202	19060	25805	25980	34237	34237					0.09109372568855179
LVRTLRVLL	9	Unmodified	_LVRTLRVLL_					0	0	0		ENSG00000095397|ENST00000362057|WHRN;nc|ENSG00000095397|Q9P202-2|WHRN	ENSG00000095397|ENST00000362057|WHRN	ENSG00000095397|ENST00000362057|WHRN	MULTI-MSMS	A375_MHC_IP_R1	1	361.9850769042969	3	361.585126	1081.73355	0.22039	7.969E-05	-0.3026	-0.00010942	-0.082213	-2.9727E-05	361.58497310417	33.756	0.65813	33.756	33.445	34.103	0					34	12	4	0	0	0	0.22013	1	11022	11022		36.506	1.5741	1	18940000			35203	2043	25806	25981	34238	34238					0.19595153807381394
LVRYLLHRAK	10	Unmodified	_LVRYLLHRAK_					0	0	0		ENSG00000171303|ENST00000302909|KCNK3	ENSG00000171303|ENST00000302909|KCNK3	ENSG00000171303|ENST00000302909|KCNK3	MULTI-SECPEP	A375_MHC_IP_R2	2	634.7610473632812	2	634.901131	1267.78771	-0.7556	-0.00047973	-2.9038	-0.0018436	-3.6594	-0.0023234	635.4010909070764	105.31	0.15351	106.08	105.97	106.12	0.76308					4	2	2	0	0	0	0.94516	1	39820	39820		1.4819	0	1	320440			35204	7593	25807	25982	34239	34239					0.16452745958918058
LVSASRDKTL	10	Unmodified	_LVSASRDKTL_					0	0	0		ENSG00000176871|ENST00000315436|WSB2;nc|ENSG00000176871|Q9NYS7-2|WSB2;nc|ENSG00000109046|Q9Y6I7-3|WSB1;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1	ENSG00000176871|ENST00000315436|WSB2;nc|ENSG00000109046|Q9Y6I7-2|WSB1	nc|ENSG00000109046|Q9Y6I7-2|WSB1	MULTI-SECPEP	A375_MHC_IP_R2	2	545.6431884765625	2	545.316763	1088.61897	-0.86089	-0.00046946	-0.48606	-0.00026506	-1.3469	-0.00073451	545.316225749391	128.65	2.1252	128.89	128.6	130.73	0.23946					96	41	5	0	0	0	0.93615	1	51279	51279		7.2892	0	1	93676000			35205	8035;2849	25808	25983	34240	34240					0.07820799534761136
LVSEQRLKL	9	Unmodified	_LVSEQRLKL_					0	0	0		ENST00000502495.1_1_4:129805634-129873545:-|nuORF;ENSG00000151466|ENST00000281142|SCLT1	ENST00000502495.1_1_4:129805634-129873545:-|nuORF	ENST00000502495.1_1_4:129805634-129873545:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	543.737060546875	2	543.337498	1084.66044	-0.77912	-0.00042333	0.071838	3.9032E-05	-0.70729	-0.00038429	543.3374460242372	67.672	0.45703	68.409	68.155	68.612	0.73631					14	8	2	0	0	0	0.65527	1	25664	25664		17.113	0	1	1804300			35206	5909	25809	25984	34241	34241					0.12149980294066154
LVSGEASLLV	10	Unmodified	_LVSGEASLLV_					0	0	0			REV__ENST00000487614.1_1_10:134540479-134540797:+|nuORF	REV__ENST00000487614.1_1_10:134540479-134540797:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	494.6605224609375	2	494.289682	986.564812	-0.61186	-0.00030243	1.2706	0.00062803	0.65871	0.0003256	494.29033432075227	51.173	0.45517	51.926	51.613	52.069	0.75277					11	8	2	0	0	0	0.78945	1	19305	19305		25.399	13.759	1	1426300	+		35207	25337	25810	25985	34242	34242					0.07099207383203066
LVSGIPSLQI	10	Unmodified	_LVSGIPSLQI_					0	0	0		nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E;ENSG00000198216|ENST00000367573|CACNA1E;ENST00000533229.1_1_1:181452799-181620578:+|nuORF	nc|ENSG00000198216|Q15878-2|CACNA1E	nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-SECPEP	A375_MHC_IP_R1	1	514.2135009765625	2	513.813325	1025.6121	-0.70309	-0.00036126	-0.05612	-2.8835E-05	-0.75921	-0.00039009	513.8133407630922	84.981	0.46037	84.981	84.8	85.261	0					11	8	2	0	0	0	0.63381	1	31171	31171		24.991	2.2547	1	1515500			35208	9243	25811	25986	34243	34243					0.10031486654179389
LVSGKIIAIL	10	Unmodified	_LVSGKIIAIL_					0	0	0		SLC30A10|p.T348I|1|0.14|ENSG00000196660|chr1:219915864-219915864|G/A|missense_variant	SLC30A10|p.T348I|1|0.14|ENSG00000196660|chr1:219915864-219915864|G/A|missense_variant	SLC30A10|p.T348I|1|0.14|ENSG00000196660|chr1:219915864-219915864|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	514.258056640625	2	513.84971	1025.68487	-0.48063	-0.00024697	0.28403	0.00014595	-0.1966	-0.00010102	514.3511107927736	79.603	0.5122	79.603	79.367	79.879	0					15	9	2	0	0	0	0.93615	1	29147	29147		3.9444	1.0552	1	752360			35209	29181	25812	25987	34244	34244					0.17305240447603865
LVSHLNNVF	9	Unmodified	_LVSHLNNVF_					0	0	0		EXOC1|p.A348V|1|0.48|ENSG00000090989|chr4:55871927-55871927|C/T|missense_variant	EXOC1|p.A348V|1|0.48|ENSG00000090989|chr4:55871927-55871927|C/T|missense_variant	EXOC1|p.A348V|1|0.48|ENSG00000090989|chr4:55871927-55871927|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	522.1875610351562	2	521.787641	1041.56073	-0.72843	-0.00038009	0.26923	0.00014048	-0.4592	-0.0002396	521.7876578821662	72.526	1.6242	73.262	72.517	74.141	0.7354					41	31	2	0	0	0	0.43707	1	27484	27484		36.044	36.044	1	9988100			35210	13962	25813	25988	34245	34245					0.04161162680134112
LVSHLNNVF	9	Unmodified	_LVSHLNNVF_					0	0	0		EXOC1|p.A348V|1|0.48|ENSG00000090989|chr4:55871927-55871927|C/T|missense_variant	EXOC1|p.A348V|1|0.48|ENSG00000090989|chr4:55871927-55871927|C/T|missense_variant	EXOC1|p.A348V|1|0.48|ENSG00000090989|chr4:55871927-55871927|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	521.787641	1041.56073	-0.50335	-0.00026264	0.015809	8.2488E-06	-0.48754	-0.00025439	521.7875280129364	73.361	1.0146	73.361	72.98	73.995	0	0.049746	-0.00014852	NaN	28.487	54	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13927000			35211	13962	25813	25988							0.04161162680134112
LVSIIDALLW	10	Unmodified	_LVSIIDALLW_					0	0	0			REV__ENSG00000178795|ENST00000315938|GDPD4	REV__ENSG00000178795|ENST00000315938|GDPD4	MULTI-SECPEP	A375_MHC_IP_R2	2	381.2763671875	3	381.565509	1141.6747	-0.084346	-3.2184E-05	-2.675	-0.0010207	-2.7593	-0.0010529	381.5647137625712	30.932	0.30408	31.651	31.517	31.821	0.71857					11	5	3	0	0	0	0.79749	1	10914	10914		27.223	12.266	1	1776800	+		35212	21520	25814	25989	34246	34246					0.10952632722364797
LVSKLNTEV	9	Unmodified	_LVSKLNTEV_					0	0	0		nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-SECPEP	A375_MHC_IP_R2	2	501.18695068359375	2	501.795132	1001.57571	-0.55051	-0.00027624	-1.4563	-0.00073078	-2.0068	-0.001007	501.7943595724456	42.267	0.30706	43.039	42.86	43.167	0.7724					9	5	2	0	0	0	0.4261	1	15663	15663		24.021	1.2843	1	3539700			35213	14445	25815	25990	34247	34247					0.07498609757476515
LVSKNQKPPIY	11	Unmodified	_LVSKNQKPPIY_					0	0	0			REV__ENST00000477426.1_1_3:81704122-81720126:-|nuORF	REV__ENST00000477426.1_1_3:81704122-81720126:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	643.9634399414062	2	643.876988	1285.73942	-0.51661	-0.00033264	-0.4292	-0.00027635	-0.94581	-0.00060899	643.8765200372475	77.082	0.86382	77.082	76.93	77.793	0					20	16	2	0	0	0	0.72949	1	28332	28332		9.3831	3.6513	1	2001200	+		35214	17826	25816	25991	34248	34248					0.10798207528387138
LVSLGHTLGY	10	Unmodified	_LVSLGHTLGY_					0	0	0			REV__ENST00000367142.4_1_1:205687259-205687394:-|nuORF	REV__ENST00000367142.4_1_1:205687259-205687394:-|nuORF	MSMS	A375_MHC_IP_R1	1	530.2030639648438	2	530.295299	1058.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.174	1	91.174	90.674	91.674	0								0	0	0	0.14304	1	33503	33503		28.487	3.813	1		+		35215	23955	25817	25992	34249	34249					0.049100294773325004
LVSLQDEIEF	10	Unmodified	_LVSLQDEIEF_					0	0	0		ENST00000466151.1_1_1:17402167-17409162:-|nuORF	ENST00000466151.1_1_1:17402167-17409162:-|nuORF	ENST00000466151.1_1_1:17402167-17409162:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	597.2085571289062	2	596.808436	1191.60232	-0.47657	-0.00028442	0.2934	0.00017511	-0.18317	-0.00010932	596.8084907072922	89.509	0.86459	90.241	89.886	90.751	0.7318					35	16	3	0	0	0	0.6774	1	34017	34017		34.402	6.7729	1	7635400			35216	12257	25818	25993	34250	34250					0.014182538581280824
LVSNLDITAN	10	Unmodified	_LVSNLDITAN_					0	0	0			REV__nc|ENSG00000146426|Q8IVF5-3|TIAM2	REV__nc|ENSG00000146426|Q8IVF5-3|TIAM2	MSMS	A375_MHC_IP_R2	2	530.2022705078125	2	530.287671	1058.56079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.361	1	91.093	90.593	91.593	0.7324								0	0	0	0.14622	1	34380	34380		24.991	0.97039	1		+		35217	19536	25819	25994	34251	34251					0.03385117889456524
LVSNLLKVIL	10	Unmodified	_LVSNLLKVIL_					0	0	0			REV__SLC34A3|p.M512Hfs*81|1|0.67|ENSG00000198569|chr9:137236143-137236144|-/G|frameshift_variant	REV__SLC34A3|p.M512Hfs*81|1|0.67|ENSG00000198569|chr9:137236143-137236144|-/G|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	556.7769165039062	2	556.376092	1110.73763	-0.69627	-0.00038739	1.4861	0.00082683	0.78983	0.00043944	556.3768544281221	92.678	0.65858	93.417	93.038	93.696	0.73902					21	12	2	0	0	0	0.93404	1	35263	35263		1.8442	1.3859	1	1852800	+		35218	22383	25820	25995	34252	34252					0.18669198510428942
LVSPNPGN	8	Unmodified	_LVSPNPGN_					0	0	0		ENST00000504223.1_1_4:8211385-8214524:+|nuORF	ENST00000504223.1_1_4:8211385-8214524:+|nuORF	ENST00000504223.1_1_4:8211385-8214524:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	398.5902099609375	2	399.211235	796.407917	-0.65187	-0.00026024	-0.5574	-0.00022252	-1.2093	-0.00048276	399.2108014642152	36.928	0.35676	37.699	37.41	37.767	0.7709					9	6	2	0	0	0	0.92636	1	13418	13418		23.148	2.6948	1	1224900			35219	12815	25821	25996	34253	34253					0.0015696728352168066
LVSQLNNL	8	Unmodified	_LVSQLNNL_					0	0	0			REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	MSMS	A375_MHC_IP_R2	2	450.6812438964844	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.483	1	53.235	52.735	53.735	0.75225								0	0	0	0.16876	1	19783	19783		30.637	3.0077	1		+		35220	17885	25822	25997	34254	34254					0.053857848974644185
LVSRISETE	9	Unmodified	_LVSRISETE_					0	0	0		ENSG00000044459|ENST00000380647|CNTLN;nc|ENSG00000044459|Q9NXG0|CNTLN	ENSG00000044459|ENST00000380647|CNTLN	ENSG00000044459|ENST00000380647|CNTLN	MULTI-MSMS	A375_MHC_IP_R1	1	517.6798095703125	2	517.279846	1032.54514	-0.45838	-0.00023711	0.38517	0.00019924	-0.073217	-3.7874E-05	517.2799599483338	62.12	0.7178	62.12	61.839	62.557	0					19	13	2	0	0	0	0.58047	1	22447	22447		15.847	0	1	2747500			35221	1186	25823	25998	34255	34255					0.030168313724516338
LVSRKLSLV	9	Unmodified	_LVSRKLSLV_					0	0	0		nc|ENSG00000129646|Q9H0J4|QRICH2;ENSG00000129646|ENST00000680821|QRICH2;nc|ENSG00000129646|Q9H0J4-2|QRICH2	nc|ENSG00000129646|Q9H0J4|QRICH2	nc|ENSG00000129646|Q9H0J4|QRICH2	MULTI-SECPEP	A375_MHC_IP_R2	2	507.6794738769531	2	507.837134	1013.65972	-0.88667	-0.00045028	0.19132	9.7158E-05	-0.69535	-0.00035313	507.83708268790775	54.977	0.35765	55.728	55.523	55.881	0.75075					13	6	3	0	0	0	0.73363	1	20757	20757		10.824	0	1	1542100			35222	4202	25824	25999	34256	34256					0.15343185645042468
LVSRTFKEL	9	Unmodified	_LVSRTFKEL_					0	0	0			REV__nc|ENSG00000182732|P49758-12|RGS6	REV__nc|ENSG00000182732|P49758-12|RGS6	MULTI-SECPEP	A375_MHC_IP_R2	2	547.5938720703125	2	546.824224	1091.63389	-0.5927	-0.00032411	-3.5701	-0.0019522	-4.1628	-0.0022763	546.8224552522892	111.92	0.20497	112.65	112.56	112.76	0.72459					5	3	2	0	0	0	0.75466	1	42176	42176		7.9102	0	1	868700	+		35223	27397	25825	26000	34257	34257					0.09174291402746348
LVSRVLFEGT	10	Unmodified	_LVSRVLFEGT_					0	0	0		ENSG00000016391|ENST00000315251|CHDH	ENSG00000016391|ENST00000315251|CHDH	ENSG00000016391|ENST00000315251|CHDH	MULTI-SECPEP	A375_MHC_IP_R2	2	374.97845458984375	3	374.21688	1119.62881	0.2388	8.9365E-05	-0.031287	-1.1708E-05	0.20752	7.7657E-05	374.5511316300893	50.707	0.50555	51.461	51.209	51.715	0.75406					15	9	2	0	0	0	0.94755	1	18996	18996		3.0723	0.22898	1	1946600			35224	1037	25826	26001	34258	34258					0.07377987540144204
LVSSILMHS	9	Unmodified	_LVSSILMHS_					0	0	0		SLC9C2|p.P358S|1|0.25|ENSG00000162753|chr1:173557483-173557483|G/A|missense_variant	SLC9C2|p.P358S|1|0.25|ENSG00000162753|chr1:173557483-173557483|G/A|missense_variant	SLC9C2|p.P358S|1|0.25|ENSG00000162753|chr1:173557483-173557483|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	493.1838684082031	2	493.770603	985.526652	-0.31969	-0.00015785	0.88229	0.00043565	0.5626	0.00027779	493.77103746016326	103.58	0.61015	103.58	103.27	103.88	0					19	11	2	0	0	0	0.43707	1	38142	38142		28.487	12.64	1	1045200			35225	29199	25827	26002	34259	34259					0.0333099819687277
LVSSILMHS	9	Unmodified	_LVSSILMHS_					0	0	0		SLC9C2|p.P358S|1|0.25|ENSG00000162753|chr1:173557483-173557483|G/A|missense_variant	SLC9C2|p.P358S|1|0.25|ENSG00000162753|chr1:173557483-173557483|G/A|missense_variant	SLC9C2|p.P358S|1|0.25|ENSG00000162753|chr1:173557483-173557483|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	493.1839599609375	2	493.770603	985.526652	-0.49098	-0.00024243	1.3016	0.00064268	0.8106	0.00040025	493.7710824625476	102.74	1.0166	103.51	103.02	104.04	0.76428					29	19	2	0	0	0	0.43707	1	39038	39038		28.487	11.545	1	1278500			35226	29199	25827	26002	34260	34260					0.0333099819687277
LVSSSDAWDG	10	Unmodified	_LVSSSDAWDG_					0	0	0			REV__nc|ENSG00000078687|Q9HCJ0-1|TNRC6C	REV__nc|ENSG00000078687|Q9HCJ0-1|TNRC6C	MULTI-MSMS	A375_MHC_IP_R1	1	519.193359375	2	518.732729	1035.4509	-0.72074	-0.00037387	-1.1013	-0.00057127	-1.822	-0.00094514	518.7320760155528	84.422	0.70962	84.422	84.091	84.8	0					28	13	3	0	0	0	0.6806	1	30992	30992		14.838	0.93222	1	4675500	+		35227	16715	25828	26003	34261	34261					-0.06540307449722604
LVSSSDAWDG	10	Unmodified	_LVSSSDAWDG_					0	0	0			REV__nc|ENSG00000078687|Q9HCJ0-1|TNRC6C	REV__nc|ENSG00000078687|Q9HCJ0-1|TNRC6C	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1312866210938	2	518.732729	1035.4509	-0.6347	-0.00032924	-1.0588	-0.00054926	-1.6935	-0.0008785	518.732031891248	83.879	0.71748	84.619	84.254	84.971	0.73962					29	13	3	0	0	0	0.91556	1	31856	31856		14.838	14.838	1	4092800	+		35228	16715	25828	26003	34262	34262					-0.06540307449722604
LVSVDEESY	9	Unmodified	_LVSVDEESY_					0	0	0		ENSG00000118496|ENST00000237281|FBXO30	ENSG00000118496|ENST00000237281|FBXO30	ENSG00000118496|ENST00000237281|FBXO30	MSMS	A375_MHC_IP_R1	1	520.7105102539062	2	520.742762	1039.47097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.234	1	56.234	55.734	56.734	0								0	0	0	0.15486	1	20140	20140		8.5933	2.2392	1				35229	3544	25829	26004	34263	34263					-0.04718556509737937
LVSVKKEKTV	10	Unmodified	_LVSVKKEKTV_					0	0	0		CON__Q9TRI1	CON__Q9TRI1	CON__Q9TRI1	MSMS	A375_MHC_IP_R1	1	565.8939208984375	2	565.860806	1129.70706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.041	1	89.041	88.541	89.541	0								0	0	0	0.15283	1	32704	32704		11.64	1.5664	1			+	35230	637	25830	26005	34264	34264					0.14739420125351899
LVSVTAVVSF	10	Unmodified	_LVSVTAVVSF_					0	0	0		tr|U7STT8|U7STT8_FUSNUManganese/zinc/irontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01565PE=3SV=1	tr|U7STT8|U7STT8_FUSNUManganese/zinc/irontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01565PE=3SV=1	tr|U7STT8|U7STT8_FUSNUManganese/zinc/irontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01565PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	511.6999206542969	2	511.30005	1020.58555	-0.57163	-0.00029228	0.35423	0.00018112	-0.2174	-0.00011116	511.3001515947334	95.466	0.66343	96.217	95.888	96.551	0.75044					34	12	4	0	0	0	0.16517	1	36214	36214		61.357	2.6787	1	11873000			35231	29712	25831	26006	34265	34265					0.07607797762852897
LVTDGIFLAY	10	Unmodified	_LVTDGIFLAY_					0	0	0			REV__SUPT16H|p.T398I|1|0.47|ENSG00000092201|chr14:21364867-21364867|G/A|missense_variant	REV__SUPT16H|p.T398I|1|0.47|ENSG00000092201|chr14:21364867-21364867|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	555.6990966796875	2	556.305332	1110.59611	-0.67769	-0.000377	0.08398	4.6718E-05	-0.59371	-0.00033028	556.3050467497148	109.43	0.55602	110.17	109.83	110.38	0.74683					22	10	3	0	0	0	0.63639	1	41329	41329		18.146	1.2041	1	2761600	+		35232	16966	25832	26007	34266	34266					0.045237804172757023
LVTGTILGEA	10	Unmodified	_LVTGTILGEA_					0	0	0			REV__ENSG00000088179|ENST00000263708|PTPN4	REV__ENSG00000088179|ENST00000263708|PTPN4	MULTI-SECPEP	A375_MHC_IP_R1	1	487.6814880371094	2	487.281857	972.549162	-0.15286	-7.4486E-05	1.6308	0.00079468	1.478	0.0007202	487.2817462239477	35.135	0.55944	35.135	34.963	35.522	0					20	10	3	0	0	0	0.22217	1	11676	11676		56.177	0.6743	1	2768200	+		35233	16880	25833	26008	34267	34267					0.0617892086613665
LVTGVTTV	8	Unmodified	_LVTGVTTV_					0	0	0		UQCRFS1|p.S114F|1|0.18|ENSG00000169021|chr19:29208032-29208032|G/A|missense_variant;UQCRFS1|p.V137Nfs*11|1|0.12|ENSG00000169021|chr19:29207964-29207965|-/GAACTGGGTGACGGCATATT|frameshift_variant;ENSG00000169021|ENST00000304863|UQCRFS1;nc|ENSG00000226085|P0C7P4|UQCRFS1P1	UQCRFS1|p.S114F|1|0.18|ENSG00000169021|chr19:29208032-29208032|G/A|missense_variant	UQCRFS1|p.S114F|1|0.18|ENSG00000169021|chr19:29208032-29208032|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	395.6395568847656	2	395.239461	788.46437	0.012283	4.8549E-06	0.21412	8.4629E-05	0.2264	8.9484E-05	395.23943510594466	33.838	0.50523	33.838	33.597	34.103	0					22	9	3	0	0	0	0.78043	1	11087	11087		40.449	2.2974	1	4516800			35234	7372	25834	26009	34268	34268					0.06167595120189162
LVTGVTTV	8	Unmodified	_LVTGVTTV_					0	0	0		UQCRFS1|p.S114F|1|0.18|ENSG00000169021|chr19:29208032-29208032|G/A|missense_variant;UQCRFS1|p.V137Nfs*11|1|0.12|ENSG00000169021|chr19:29207964-29207965|-/GAACTGGGTGACGGCATATT|frameshift_variant;ENSG00000169021|ENST00000304863|UQCRFS1;nc|ENSG00000226085|P0C7P4|UQCRFS1P1	UQCRFS1|p.S114F|1|0.18|ENSG00000169021|chr19:29208032-29208032|G/A|missense_variant	UQCRFS1|p.S114F|1|0.18|ENSG00000169021|chr19:29208032-29208032|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	395.59332275390625	2	395.239461	788.46437	-0.3199	-0.00012644	0.17914	7.0803E-05	-0.14076	-5.5634E-05	395.2394727730273	33.114	0.56045	33.866	33.686	34.247	0.75225					16	10	2	0	0	0	0.78043	1	11844	11844		40.449	2.2974	1	6049800			35235	7372	25834	26009	34269	34269					0.06167595120189162
LVTLHLIV	8	Unmodified	_LVTLHLIV_					0	0	0			REV__ENSG00000153207|ENST00000648844|AHCTF1	REV__ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MSMS	A375_MHC_IP_R1	1	454.7021484375	2	454.302396	906.590239	-0.26557	-0.00012065	0.42905	0.00019492	0.16348	7.427E-05	454.30251176631214	76.038	1.2658	76.038	75.664	76.93	0					63	24	4	0	0	0	0.70179	1	27879	27879		34.187	2.0704	1	64406000	+		35236	19832	25835	26010	34270	34270					0.13320726696292695
LVTLHLIV	8	Unmodified	_LVTLHLIV_					0	0	0			REV__ENSG00000153207|ENST00000648844|AHCTF1	REV__ENSG00000153207|ENST00000648844|AHCTF1	MULTI-SECPEP	A375_MHC_IP_R1	1	454.702392578125	2	454.302396	906.590239	-0.26557	-0.00012065	0.42905	0.00019492	0.16348	7.427E-05	454.30251176631214	76.038	1.2658	76.038	75.664	76.93	0					63	24	4	0	0	0	0.58504	1	27644	27644		52.693	9.7251	1	64406000	+		35237	19832	25835	26010	34271	34271					0.13320726696292695
LVTLHLIV	8	Unmodified	_LVTLHLIV_					0	0	0			REV__ENSG00000153207|ENST00000648844|AHCTF1	REV__ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MSMS	A375_MHC_IP_R2	2	454.7022399902344	2	454.302396	906.590239	-0.27558	-0.0001252	0.17953	8.1561E-05	-0.096053	-4.3637E-05	454.3024207506313	75.043	1.1191	75.78	75.365	76.484	0.73751					60	21	5	0	0	0	0.24611	1	28414	28414		63.394	10.701	1	51806000	+		35238	19832	25835	26010	34272	34272					0.13320726696292695
LVTLHLIV	8	Unmodified	_LVTLHLIV_					0	0	0			REV__ENSG00000153207|ENST00000648844|AHCTF1	REV__ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	454.302396	906.590239	-0.27558	-0.0001252	0.17953	8.1561E-05	-0.096053	-4.3637E-05	454.3024207506313	75.043	1.1191	75.78	75.365	76.484	0.73751	-0.12871	-8.917E-05	NaN	63.394	60	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51806000	+		35239	19832	25835	26010							0.13320726696292695
LVTLRDVVI	9	Unmodified	_LVTLRDVVI_					0	0	0		ENST00000334116.7_2_19:37042871-37064163:-|nuORF;ENSG00000186020|ENST00000591340|ZNF529	ENST00000334116.7_2_19:37042871-37064163:-|nuORF	ENST00000334116.7_2_19:37042871-37064163:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	514.7289428710938	2	514.329142	1026.64373	-0.85594	-0.00044023	0.27607	0.00014199	-0.57986	-0.00029824	514.329212347599	97.753	0.71214	98.509	98.178	98.891	0.75586					30	13	4	0	0	0	0.27715	1	37068	37068		32.305	3.2239	1	7177700			35240	8716	25836	26011	34273	34273					0.13147479408144136
LVTLRDVVI	9	Unmodified	_LVTLRDVVI_					0	0	0		ENST00000334116.7_2_19:37042871-37064163:-|nuORF;ENSG00000186020|ENST00000591340|ZNF529	ENST00000334116.7_2_19:37042871-37064163:-|nuORF	ENST00000334116.7_2_19:37042871-37064163:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	514.329142	1026.64373	-0.85594	-0.00044023	0.27607	0.00014199	-0.57986	-0.00029824	514.329212347599	97.753	0.71214	98.509	98.178	98.891	0.75586	-0.17229	0.00019469	NaN	32.305	30	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7177700			35241	8716	25836	26011							0.13147479408144136
LVTNEAPI	8	Unmodified	_LVTNEAPI_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-SECPEP	A375_MHC_IP_R2	2	429.2912902832031	2	428.742368	855.470183	-0.012283	-5.2661E-06	1.3897	0.00059583	1.3774	0.00059056	428.7408595477956	140.62	0.61038	140.66	140.2	140.81	0.042175					16	11	2	0	0	0	0.972	1	55023	55023		2.5775	0	1	1212300	+		35242	22555	25837	26012	34274	34274					0.03666693631839735
LVTNEKSTYS	10	Unmodified	_LVTNEKSTYS_					0	0	0			REV__ENSG00000165195|ENST00000333590|PIGA	REV__ENSG00000165195|ENST00000333590|PIGA	MULTI-SECPEP	A375_MHC_IP_R2	2	570.9296264648438	2	571.290411	1140.56627	-0.19653	-0.00011228	2.6697	0.0015252	2.4732	0.0014129	571.7920978168767	91.598	1.064	92.332	91.767	92.831	0.7345					25	20	2	0	0	0	0.87163	1	34894	34894		9.3831	0	1	2867200	+		35243	20559	25838	26013	34275	34275					0.001607966813025996
LVTRIRKTL	9	Unmodified	_LVTRIRKTL_					0	0	0			REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9;REV__nc|ENSG00000135905|Q96BY6-3|DOCK10;REV__ENSG00000147251|ENST00000276202|DOCK11	REV__ENSG00000147251|ENST00000276202|DOCK11	MULTI-MSMS	A375_MHC_IP_R1	1	366.95965576171875	3	367.248514	1098.72371	0.080607	2.9603E-05	2.7503	0.00101	2.8309	0.0010396	367.24950900949267	19.275	0.85812	19.275	19.221	20.079	0					26	13	3	0	0	0	0.66474	1	4666	4666		10.151	4.8537	1	38751000	+		35244	19581;18896;16886	25839	26014	34276	34276					0.17829965801979597
LVTRVRTT	8	Unmodified	_LVTRVRTT_					0	0	0			REV__ENSG00000016082|ENST00000230658|ISL1	REV__ENSG00000016082|ENST00000230658|ISL1	MULTI-SECPEP	A375_MHC_IP_R2	2	473.69512939453125	2	473.295633	944.576714	-0.59554	-0.00028187	-0.32405	-0.00015337	-0.91959	-0.00043524	473.2953884625608	32.363	0.45937	33.1	32.857	33.317	0.73691					16	8	3	0	0	0	0.91495	1	11539	11539		18.135	10.225	1	4087500	+		35245	16250	25840	26015	34277	34277					0.1022086891704248
LVTRVRTT	8	Unmodified	_LVTRVRTT_					0	0	0			REV__ENSG00000016082|ENST00000230658|ISL1	REV__ENSG00000016082|ENST00000230658|ISL1	MULTI-MATCH	A375_MHC_IP_R1	1		2	473.295633	944.576714	-0.48327	-0.00022873	-0.00035182	-1.6652E-07	-0.48362	-0.00022889	473.2956021662987	33.279	0.5079	33.279	33.09	33.597	0	0.089196	0.0001288	NaN	18.135	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3733100	+		35246	16250	25840	26015							0.1022086891704248
LVTSRRERRRR	11	Unmodified	_LVTSRRERRRR_					0	0	0			REV__nc|ENSG00000162522|Q9P206|NHSL3	REV__nc|ENSG00000162522|Q9P206|NHSL3	MSMS	A375_MHC_IP_R1	1	495.6508483886719	3	495.637946	1483.89201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.147	1	88.147	87.647	88.647	0								0	0	0	0.16305	1	32354	32354		2.8433	0.21205	1		+		35247	20263	25841	26016	34278	34278					0.16941840768322436
LVTVENRLK	9	Unmodified	_LVTVENRLK_					0	0	0			REV__ENST00000543205.1_1_12:122762601-122763649:-|nuORF	REV__ENST00000543205.1_1_12:122762601-122763649:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	358.3128356933594	3	357.888874	1070.64479	-0.18344	-6.5651E-05	-0.44597	-0.00015961	-0.62941	-0.00022526	357.8885797880699	32.749	0.151	32.749	32.634	32.785	0					4	2	2	0	0	0	0.69507	1	10604	10604		9.544	0.56773	1	1062700	+		35248	18565	25842	26017	34279	34279					0.11229693777045213
LVTVPVQQW	9	Unmodified	_LVTVPVQQW_					0	0	0		ENST00000243077.7_1_12:57589876-57589927:+|nuORF	ENST00000243077.7_1_12:57589876-57589927:+|nuORF	ENST00000243077.7_1_12:57589876-57589927:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	534.6715087890625	2	535.305667	1068.59678	-0.85116	-0.00045563	-1.7911	-0.00095877	-2.6422	-0.0014144	535.303277008729	32.368	0.25359	33.105	32.909	33.162	0.73691					5	4	2	0	0	0	0.74651	1	11490	11490		8.5933	0.68312	1	769320			35249	10172	25843	26018	34280	34280					0.06522619856991696
LVVCVWLA	8	Unmodified	_LVVCVWLA_					0	0	0			REV__nc|ENSG00000132003|Q9H7M6|ZSWIM4	REV__nc|ENSG00000132003|Q9H7M6|ZSWIM4	MSMS	A375_MHC_IP_R2	2	451.65045166015625	2	451.762049	901.509546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.19	1	42.963	42.463	43.463	0.7724								0	0	0	0.16876	1	15687	15687		11.114	0.93107	1		+		35250	18634	25844	26019	34281	34281					0.054851223817195205
LVVEPMENW	9	Unmodified	_LVVEPMENW_					0	0	0		ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	MULTI-SECPEP	A375_MHC_IP_R2	2	558.2212524414062	2	558.773342	1115.53213	-0.88225	-0.00049298	-1.9734	-0.0011027	-2.8556	-0.0015956	558.7719318808842	51.416	0.55892	52.169	51.864	52.423	0.75225					24	10	3	0	0	0	0.65246	1	19406	19406		10.824	0	1	1516800			35251	9563	25845	26020	34282	34282					-0.021013230113112513
LVVGAVAATV	10	Unmodified	_LVVGAVAATV_					0	0	0			REV__nc|ENSG00000225697|Q9BXS9-2|SLC26A6	REV__nc|ENSG00000225697|Q9BXS9-2|SLC26A6	MSMS	A375_MHC_IP_R1	1	450.66973876953125	2	450.28166	898.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.845	1	58.845	58.345	59.345	0								0	0	0	0.119	1	21147	21147		39.957	11.47	1		+		35252	22717	25846	26021	34283	34283					0.09543545936946884
LVVGPVLHW	9	Unmodified	_LVVGPVLHW_					0	0	0			REV__ENST00000409863.5_1_7:24870486-24873964:-|nuORF	REV__ENST00000409863.5_1_7:24870486-24873964:-|nuORF	MSMS	A375_MHC_IP_R2	2	510.2037353515625	2	510.30547	1018.59639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.46	1	118.12	117.62	118.62	0.65962								0	0	0	0.15486	1	44456	44456		5.2307	0	1		+		35253	24476	25847	26022	34284	34284					0.08783244927781197
LVVIKLLLKI	10	Unmodified	_LVVIKLLLKI_					0	0	0			REV__nc|ENSG00000173889|Q8NDX5-3|PHC3	REV__nc|ENSG00000173889|Q8NDX5-3|PHC3	MSMS	A375_MHC_IP_R2	2	384.6208190917969	3	384.621177	1150.8417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.893	1	29.592	29.092	30.092	0.69872								0	0	0	0.1562	1	10035	10035		0.69767	0.07084	1		+		35254	27365	25848	26023	34285	34285					0.2723152533792472
LVVKQLKVPR	10	Unmodified	_LVVKQLKVPR_					0	0	0			REV__ENSG00000162669|ENST00000370425|HFM1	REV__ENSG00000162669|ENST00000370425|HFM1	MULTI-MSMS	A375_MHC_IP_R1	1	394.336181640625	3	393.936047	1178.78631	-0.24971	-9.8368E-05	0.28766	0.00011332	0.037953	1.4951E-05	393.93616992141904	67.093	0.30664	67.093	66.938	67.245	0					12	5	3	0	0	0	0.72281	1	24355	24355		2.086	0.17963	1	1198800	+		35255	20288	25849	26024	34286	34286					0.20407111870144945
LVVKQLKVPR	10	Unmodified	_LVVKQLKVPR_					0	0	0			REV__ENSG00000162669|ENST00000370425|HFM1	REV__ENSG00000162669|ENST00000370425|HFM1	MULTI-MSMS	A375_MHC_IP_R2	2	394.3359680175781	3	393.936047	1178.78631	-0.3686	-0.0001452	0.28438	0.00011203	-0.08422	-3.3177E-05	393.93619269791657	65.991	0.35793	66.729	66.526	66.884	0.73811					10	6	2	0	0	0	0.71946	1	25041	25041		3.5871	0.74377	1	1121600	+		35256	20288	25849	26024	34287	34287					0.20407111870144945
LVVKRLGY	8	Unmodified	_LVVKRLGY_					0	0	0		ENST00000547581.5_1_12:48529049-48539488:+|nuORF;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	474.3605651855469	2	474.30547	946.596387	-0.51373	-0.00024367	0.18637	8.8394E-05	-0.32737	-0.00015527	474.30546867855014	50.519	0.55925	50.519	50.254	50.814	0					15	10	2	0	0	0	0.77686	1	17978	17978		6.3541	0	1	1899500			35257	5973	25850	26025	34288	34288					0.12095244927797921
LVVLISVTILY	11	Unmodified	_LVVLISVTILY_					0	0	0		ENSG00000182489|ENST00000372956|XKRX;nc|ENSG00000182489|Q6PP77-2|XKRX	ENSG00000182489|ENST00000372956|XKRX	ENSG00000182489|ENST00000372956|XKRX	MSMS	A375_MHC_IP_R2	2	616.8045043945312	2	616.896857	1231.77916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.115	1	99.875	99.375	100.37	0.75977								0	0	0	0.1629	1	37599	37599		3.5965	0	1				35258	8411	25851	26026	34289	34289					0.17254334479093814
LVVLLLIGVPV	11	Unmodified	_LVVLLLIGVPV_					0	0	0			REV__ENST00000415947.1_1_2:205410861-205912470:+|nuORF	REV__ENST00000415947.1_1_2:205410861-205912470:+|nuORF	MSMS	A375_MHC_IP_R2	2	378.932861328125	3	378.933532	1133.77877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.885	1	29.584	29.084	30.084	0.69872								0	0	0	0.1635	1	10032	10032		0.50596	0.2991	1		+		35259	24527	25852	26027	34290	34290					0.21722959549879306
LVVLVIVLVPV	11	Unmodified	_LVVLVIVLVPV_					0	0	0			REV__ENST00000482827.1_1_X:74722059-74742841:-|nuORF	REV__ENST00000482827.1_1_X:74722059-74742841:-|nuORF	MSMS	A375_MHC_IP_R2	2	581.8770141601562	2	581.91231	1161.81007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.04	1	88.772	88.272	89.272	0.7318								0	0	0	0.1629	1	33499	33499		3.5965	2.1146	1		+		35260	17218	25853	26028	34291	34291					0.23563532583966662
LVVLVSRRK	9	Unmodified	_LVVLVSRRK_					0	0	0		ENSG00000172497|ENST00000307624|ACOT12	ENSG00000172497|ENST00000307624|ACOT12	ENSG00000172497|ENST00000307624|ACOT12	MULTI-MSMS	A375_MHC_IP_R1	1	357.2570495605469	3	357.244992	1068.71315	-0.20608	-7.3621E-05	-0.10389	-3.7115E-05	-0.30997	-0.00011074	357.2448279703248	23.965	0.25364	23.965	23.838	24.092	0					7	4	2	0	0	0	0.70902	1	6697	6697		6.1918	2.0023	1	2345000			35261	7715	25854	26029	34292	34292					0.1815398314754475
LVVNRNALL	9	Unmodified	_LVVNRNALL_					0	0	0			REV__ENSG00000256683|ENST00000243644|ZNF350	REV__ENSG00000256683|ENST00000243644|ZNF350	MULTI-SECPEP	A375_MHC_IP_R2	2	506.7185363769531	2	506.319109	1010.62366	-0.80178	-0.00040596	0.36261	0.0001836	-0.43917	-0.00022236	506.31914445444806	32.857	0.5591	33.594	33.317	33.876	0.73692					18	10	3	0	0	0	0.43707	1	11736	11736		28.487	6.7402	1	4660200	+		35262	22884	25855	26030	34293	34293					0.11877728468175519
LVVPNREGP	9	Unmodified	_LVVPNREGP_					0	0	0			REV__ENSG00000185736|ENST00000381312|ADARB2	REV__ENSG00000185736|ENST00000381312|ADARB2	MSMS	A375_MHC_IP_R2	2	490.66717529296875	2	490.779816	979.545079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50	1	50.754	50.254	51.254	0.75406								0	0	0	0.15486	1	18797	18797		13.508	4.7625	1		+		35263	21914	25856	26031	34294	34294					0.054488761630864246
LVVPVFTFLQF	11	Unmodified	_LVVPVFTFLQF_					0	0	0		ENST00000529265.5_1_11:61717864-61725974:+|nuORF;ENST00000524877.5_1_11:61722897-61725974:+|nuORF;nc|ENSG00000167995|O76090-4|BEST1;ENSG00000167995|ENST00000378043|BEST1;nc|ENSG00000167995|O76090-3|BEST1	ENST00000529265.5_1_11:61717864-61725974:+|nuORF	ENST00000529265.5_1_11:61717864-61725974:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	655.7818603515625	2	655.381374	1308.7482	-0.67237	-0.00044066	0.47485	0.00031121	-0.19752	-0.00012945	655.3827373548427	137.54	2.0749	137.63	137.3	139.37	0.083969					72	40	3	0	0	0	0.7362	1	54341	54341		2.9952	0.26005	1	2350600			35264	7249	25857	26032	34295	34295					0.10617181164820977
LVVPVLGRM	9	Unmodified	_LVVPVLGRM_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1;nc|ENSG00000095564|O14981-2|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-SECPEP	A375_MHC_IP_R2	2	492.6851501464844	2	492.307155	982.599758	-0.53695	-0.00026434	3.0217	0.0014876	2.4848	0.0012233	492.30818338240766	130.17	0.60826	130.38	129.89	130.5	0.21419					25	11	3	0	0	0	0.77244	1	51017	51017		9.3474	3.587	1	12421000			35265	2045	25858	26033	34296	34296					0.10776171710153903
LVVRGMGH	8	Unmodified	_LVVRGMGH_					0	0	0		nc|ENSG00000148357|Q8NDA2-4|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	MSMS	A375_MHC_IP_R2	2	434.6739196777344	2	434.744722	867.474891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.626	1	42.401	41.901	42.901	0.77451								0	0	0	0.16876	1	15453	15453		2.8892	0	1				35266	14668	25859	26034	34297	34297					0.035852992936384
LVVRHQLLKT	10	Unmodified	_LVVRHQLLKT_					0	0	0		ENSG00000127184|ENST00000247655|COX7C;ENST00000511472.5_1_5:85913768-85915283:+|nuORF	ENSG00000127184|ENST00000247655|COX7C	ENSG00000127184|ENST00000247655|COX7C	MULTI-SECPEP	A375_MHC_IP_R1	1	403.3272399902344	3	402.927552	1205.76083	-0.67366	-0.00027144	0.42093	0.0001696	-0.25274	-0.00010183	402.92766904989986	29.022	0.30425	29.022	28.845	29.149	0					12	5	3	0	0	0	0.74574	1	9055	9055		28.181	16.663	1	5502900			35267	4079	25860	26035	34298	34298					0.1661763734773558
LVVRHQLLKT	10	Unmodified	_LVVRHQLLKT_					0	0	0		ENSG00000127184|ENST00000247655|COX7C;ENST00000511472.5_1_5:85913768-85915283:+|nuORF	ENSG00000127184|ENST00000247655|COX7C	ENSG00000127184|ENST00000247655|COX7C	MULTI-SECPEP	A375_MHC_IP_R2	2	402.6083679199219	3	402.927552	1205.76083	-0.15331	-6.1774E-05	-0.32106	-0.00012936	-0.47437	-0.00019114	402.9273946048423	28.076	0.30474	28.755	28.604	28.909	0.67857					13	5	3	0	0	0	0.64262	1	9677	9677		23.964	15.52	1	4898900			35268	4079	25860	26035	34299	34299					0.1661763734773558
LVVRKKRKSQQ	11	Unmodified	_LVVRKKRKSQQ_					0	0	0		ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111	ENSG00000157450|ENST00000348370|RNF111	ENSG00000157450|ENST00000348370|RNF111	MSMS	A375_MHC_IP_R2	2	685.542236328125	2	685.441152	1368.86775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.02	1	108.78	108.28	109.28	0.75436								0	0	0	0.16331	1	40799	40799		1.4819	0	1				35269	6245	25861	26036	34300	34300					0.19807187562128092
LVVRLRRRQYI	11	Unmodified	_LVVRLRRRQYI_					0	0	0			REV__ENSG00000179846|ENST00000686631|NKPD1	REV__ENSG00000179846|ENST00000686631|NKPD1	MSMS	A375_MHC_IP_R1	1	736.8330078125	2	736.470244	1470.92593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.65	1	143.65	143.15	144.15	0								0	0	0	0.16354	1	55105	55105		0.30703	0.30703	1		+		35270	21582	25862	26037	34301	34301					0.20930869207404612
LVVRPRKRY	9	Unmodified	_LVVRPRKRY_					0	0	0			REV__ENST00000562330.5_1_16:84216724-84218621:-|nuORF	REV__ENST00000562330.5_1_16:84216724-84218621:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	396.6557312011719	3	396.255891	1185.74584	-0.25938	-0.00010278	0.2115	8.3806E-05	-0.047885	-1.8975E-05	396.2559481191004	27.811	0.75506	27.811	27.533	28.288	0					35	14	3	0	0	0	0.68705	1	8467	8467		8.1555	0.21013	1	16160000	+		35271	17255	25863	26038	34302	34302					0.1604019027040522
LVVRPRKRY	9	Unmodified	_LVVRPRKRY_					0	0	0			REV__ENST00000562330.5_1_16:84216724-84218621:-|nuORF	REV__ENST00000562330.5_1_16:84216724-84218621:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	396.9716491699219	3	396.255891	1185.74584	-0.34521	-0.00013679	0.15986	6.3347E-05	-0.18534	-7.3443E-05	396.25598413106854	26.831	0.56321	27.491	27.313	27.876	0.65992					26	10	3	0	0	0	0.74768	1	9144	9144		2.7352	0	1	19572000	+		35272	17255	25863	26038	34303	34303					0.1604019027040522
LVVRRQWLKML	11	Unmodified	_LVVRRQWLKML_					0	0	0			REV__OR10A6|p.R306Q|2|0.34|ENSG00000279000|chr11:7927746-7927746|C/T|missense_variant	REV__OR10A6|p.R306Q|2|0.34|ENSG00000279000|chr11:7927746-7927746|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	721.4450073242188	2	721.444849	1440.87514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112	1	112.73	112.23	113.23	0.72458								0	0	0	0.16297	1	42227	42227		3.2813	0	1		+		35273	27646	25864	26039	34304	34304					0.17234203838188478
LVVRRRRRRR	10	Unmodified	_LVVRRRRRRR_					0	0	0		ENST00000356978.8_1_14:90863393-90866410:+|nuORF;ENST00000447653.7_1_14:90863393-90865345:+|nuORF	ENST00000356978.8_1_14:90863393-90866410:+|nuORF	ENST00000356978.8_1_14:90863393-90866410:+|nuORF	MSMS	A375_MHC_IP_R1	1	711.9754028320312	2	711.976893	1421.93923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.86	1	107.86	107.36	108.36	0								0	0	0	0.15628	1	39573	39573		0.45834	0.10771	1				35274	10975	25865	26040	34305	34305					0.24514164829975016
LVVSVSSKQGL	11	Unmodified	_LVVSVSSKQGL_					0	0	0		LRP1B|p.S4105L|1|0.24|ENSG00000168702|chr2:140325788-140325788|G/A|missense_variant	LRP1B|p.S4105L|1|0.24|ENSG00000168702|chr2:140325788-140325788|G/A|missense_variant	LRP1B|p.S4105L|1|0.24|ENSG00000168702|chr2:140325788-140325788|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	372.95733642578125	3	372.892284	1115.65502	0.12668	4.7236E-05	3.8576	0.0014385	3.9843	0.0014857	373.22862803718044	23.47	0.60697	24.1	23.878	24.485	0.63014					28	11	4	0	0	0	0.7328	1	7580	7580		6.2344	0.45093	1	4079200			35275	14315	25866	26041	34306	34306					0.1018225671161872
LVWEEPEV	8	Unmodified	_LVWEEPEV_					0	0	0		ENST00000405860.7_1_17:49286686-49286758:-|nuORF	ENST00000405860.7_1_17:49286686-49286758:-|nuORF	ENST00000405860.7_1_17:49286686-49286758:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	500.70745849609375	2	500.752933	999.491313	-0.45385	-0.00022727	0.20927	0.00010479	-0.24458	-0.00012247	500.7529669333933	64.725	1.2724	64.725	64.444	65.717	0					44	24	2	0	0	0	0.72761	1	23643	23643		26.341	1.6674	1	3888500			35276	11595	25867	26042	34307	34307					-0.008453410592892396
LVWEPEDME	9	Unmodified	_LVWEPEDME_					0	0	0		ENSG00000144535|ENST00000325385|DIS3L2;ENST00000429283.2_1_2:233200464-233200857:+|nuORF;ENST00000433430.5_1_2:233196570-233200992:+|nuORF;ENST00000445090.5_1_2:233194598-233200857:+|nuORF	ENSG00000144535|ENST00000325385|DIS3L2	ENSG00000144535|ENST00000325385|DIS3L2	MULTI-SECPEP	A375_MHC_IP_R2	2	383.960205078125	3	383.170719	1146.49033	-0.49084	-0.00018807	0.11177	4.2828E-05	-0.37906	-0.00014525	383.1705554979667	54.027	0.51246	54.778	54.353	54.866	0.75105					12	9	2	0	0	0	0.80005	1	20267	20267		1.0715	0.9486	1	871460			35277	5491	25868	26043	34308	34308					-0.0770592349049366
LVWKAQNTW	9	Unmodified	_LVWKAQNTW_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156106882-156107552:+|nuORF	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-SECPEP	A375_MHC_IP_R1	1	573.7085571289062	2	573.308741	1144.60293	0.14913	8.5496E-05	0.45027	0.00025814	0.5994	0.00034364	573.3088192430887	69.859	0.60622	69.859	69.579	70.185	0					29	11	4	0	0	0	0.063333	1	25328	25328		92.653	44.307	1	6483000			35278	6442	25869	26044	34309	34309					0.03641138088505613
LVWLLCILL	9	Unmodified	_LVWLLCILL_					0	0	0			REV__nc|ENSG00000116641|Q96N67-4|DOCK7	REV__nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	A375_MHC_IP_R1	1	362.6174011230469	3	362.564563	1084.67186	0.17799	6.4532E-05	-0.24169	-8.7629E-05	-0.063706	-2.3097E-05	362.5644298322377	60.286	0.66243	60.286	59.955	60.618	0					34	12	4	0	0	0	0.74477	1	21655	21655		2.9952	0	1	14531000	+		35279	17960	25870	26045	34310	34310					0.13291086063850344
LVWPSSPSL	9	Unmodified	_LVWPSSPSL_					0	0	0		ENST00000537606.5_1_2:27599853-27599982:+|nuORF	ENST00000537606.5_1_2:27599853-27599982:+|nuORF	ENST00000537606.5_1_2:27599853-27599982:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	493.2132263183594	2	493.271293	984.528032	-0.39531	-0.000195	0.11967	5.9029E-05	-0.27564	-0.00013597	493.27155461590814	76.244	0.40369	76.244	75.966	76.37	0					10	7	2	0	0	0	0.5339	1	27809	27809		18.135	0	1	909750			35280	13250	25871	26046	34311	34311					0.03514955557295707
LVWPWLTL	8	Unmodified	_LVWPWLTL_					0	0	0		ENST00000508532.5_1_3:130613078-130613580:+|nuORF	ENST00000508532.5_1_3:130613078-130613580:+|nuORF	ENST00000508532.5_1_3:130613078-130613580:+|nuORF	MSMS	A375_MHC_IP_R1	1	514.4293823242188	2	514.302396	1026.59024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.971	1	79.971	79.471	80.471	0								0	0	0	0.16876	1	29194	29194		22.453	4.3177	1				35281	12880	25872	26047	34312	34312					0.07800726696268612
LVWVDWEW	8	Unmodified	_LVWVDWEW_					0	0	0		ENST00000602772.5_1_X:73289164-73289383:+|nuORF	ENST00000602772.5_1_X:73289164-73289383:+|nuORF	ENST00000602772.5_1_X:73289164-73289383:+|nuORF	MSMS	A375_MHC_IP_R2	2	566.873046875	2	566.776742	1131.53893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.416	1	80.16	79.66	80.66	0.74474								0	0	0	0.16876	1	30137	30137		14.582	1.5392	1				35282	13889	25873	26048	34313	34313					-0.021576420684596087
LVWYYCTLTIR	11	Unmodified	_LVWYYCTLTIR_					0	0	0		ENST00000540377.1_1_12:122190073-122212999:+|nuORF;nc|ENSG00000189077|Q9BXJ8-2|TMEM120A;ENSG00000188735|ENST00000449592|TMEM120B;ENSG00000189077|ENST00000493111|TMEM120A	ENST00000540377.1_1_12:122190073-122212999:+|nuORF	ENST00000540377.1_1_12:122190073-122212999:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	716.7822265625	2	715.878673	1429.74279	-0.4963	-0.00035529	1.7186	0.0012303	1.2223	0.00087504	716.3818027142929	89.156	0.50842	89.156	88.815	89.323	0					17	9	3	0	0	0	0.72649	1	32739	32739		12.241	6.5088	1	2404200			35283	8928	25874	26049	34314	34314					0.04511134310723719
LVYITYHW	8	Unmodified	_LVYITYHW_					0	0	0		nc|ENSG00000136141|Q9Y2L9|LRCH1;ENSG00000136141|ENST00000389797|LRCH1	nc|ENSG00000136141|Q9Y2L9|LRCH1	nc|ENSG00000136141|Q9Y2L9|LRCH1	MULTI-SECPEP	A375_MHC_IP_R2	2	365.9328918457031	3	365.527165	1093.55967	-0.38288	-0.00013995	-0.66674	-0.00024371	-1.0496	-0.00038366	365.5269016020065	25.901	1.0672	26.561	26.347	27.414	0.65992					33	20	3	0	0	0	0.972	1	9032	9032		3.9444	0	1	4893800			35284	4755	25875	26050	34315	34315					0.016629483112183152
LVYNNEVF	8	Unmodified	_LVYNNEVF_					0	0	0		PIK3CB|p.K793E|1|0.31|ENSG00000051382|chr3:138683726-138683726|T/C|missense_variant	PIK3CB|p.K793E|1|0.31|ENSG00000051382|chr3:138683726-138683726|T/C|missense_variant	PIK3CB|p.K793E|1|0.31|ENSG00000051382|chr3:138683726-138683726|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	499.6531066894531	2	499.2531	996.491647	-0.4954	-0.00024733	0.28951	0.00014454	-0.20589	-0.00010279	499.25313470053294	65.468	0.511	65.468	65.206	65.717	0					17	9	2	0	0	0	0.86765	1	23675	23675		32.117	13.971	1	5851700			35285	15176	25876	26051	34316	34316					-0.006739213394212129
LVYQFKDMP	9	Unmodified	_LVYQFKDMP_					0	0	0		nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000109381|Q15723-2|ELF2;nc|ENSG00000109381|Q15723-3|ELF2;nc|ENSG00000109381|Q15723-1|ELF2;ENSG00000109381|ENST00000686138|ELF2;ENST00000404600.2_1_6:1514778-1515111:-|nuORF	nc|ENSG00000109381|Q15723-4|ELF2	nc|ENSG00000109381|Q15723-4|ELF2	MULTI-SECPEP	A375_MHC_IP_R2	2	380.1134033203125	3	380.863449	1139.56852	-0.20385	-7.7639E-05	1.2437	0.00047368	1.0398	0.00039604	380.86430043961633	66.105	0.30624	66.843	66.577	66.884	0.73811					7	5	2	0	0	0	0.74412	1	25010	25010		6.6304	3.0433	1	626760			35286	2867	25877	26052	34317	34317					0.004315538854143597
LVYRAHRI	8	Unmodified	_LVYRAHRI_					0	0	0		ENST00000576348.1_1_16:14014055-14020614:+|nuORF;nc|ENSG00000175595|Q92889-2|ERCC4;ENSG00000175595|ENST00000311895|ERCC4	ENST00000576348.1_1_16:14014055-14020614:+|nuORF	ENST00000576348.1_1_16:14014055-14020614:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	514.1858520507812	2	514.311618	1026.60868	-0.52048	-0.00026769	-1.4376	-0.00073939	-1.9581	-0.0010071	514.3110436231979	91.741	0.86102	91.741	91.249	92.11	0					36	16	3	0	0	0	0.93416	1	33598	33598		9.3474	0	1	7945100			35287	7971	25878	26053	34318	34318					0.0964428139084248
LVYRCAMY	8	Unmodified	_LVYRCAMY_					0	0	0			REV__nc|ENSG00000130396|P55196-1|AFDN	REV__nc|ENSG00000130396|P55196-1|AFDN	MULTI-MSMS	A375_MHC_IP_R1	1	510.14581298828125	2	509.746073	1017.47759	-0.58193	-0.00029664	0.51664	0.00026336	-0.065293	-3.3283E-05	509.7463264593377	91.174	1.4161	91.174	90.845	92.261	0					53	27	3	0	0	0	0.70843	1	33465	33465		32.117	5.7757	1	11041000	+		35288	18537	25879	26054	34319	34319					-0.030446133637269668
LVYSERTGQSK	11	Unmodified	_LVYSERTGQSK_					0	0	0		nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1;ENST00000592208.5_1_19:10433104-10439782:-|nuORF;nc|ENSG00000161847|Q8IY67|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	MSMS	A375_MHC_IP_R2	2	634.2705078125	2	634.335684	1266.65681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.89	1	134.06	133.56	134.56	0.16487								0	0	0	0.16273	1	52673	52673		4.5289	1.2476	1				35289	6489	25880	26055	34320	34320					0.034152657295635436
LVYSGISNQKT	11	Unmodified	_LVYSGISNQKT_					0	0	0			REV__ENST00000476275.5_1_1:78046613-78098535:-|nuORF	REV__ENST00000476275.5_1_1:78046613-78098535:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	403.3273010253906	3	403.88731	1208.6401	-0.17098	-6.9056E-05	0.79012	0.00031912	0.61914	0.00025006	403.88764664341744	28.104	0.35551	28.782	28.604	28.96	0.67857					9	6	2	0	0	0	0.98748	1	9680	9680		2.4348	0.18206	1	2790400	+		35290	16321	25881	26056	34321	34321					0.04412764843618788
LVYTNKVLQE	10	Unmodified	_LVYTNKVLQE_					0	0	0			REV__ENSG00000167642|ENST00000301244|SPINT2	REV__ENSG00000167642|ENST00000301244|SPINT2	MULTI-MSMS	A375_MHC_IP_R1	1	402.9212951660156	3	402.895806	1205.66559	-0.38709	-0.00015596	1.7989	0.00072477	1.4118	0.00056882	402.89618048392464	40.218	0.4085	40.218	40.1	40.509	0					12	7	2	0	0	0	0.7086	1	13889	13889		8.4443	5.0886	1	1950100	+		35291	20781	25882	26057	34322	34322					0.07098239366041525
LVYYPAWCV	9	Unmodified	_LVYYPAWCV_					0	0	0			REV__ENSG00000128285|ENST00000249016|MCHR1	REV__ENSG00000128285|ENST00000249016|MCHR1	MULTI-SECPEP	A375_MHC_IP_R1	1	557.7019653320312	2	557.275521	1112.53649	-0.53246	-0.00029673	-0.71846	-0.00040038	-1.2509	-0.00069711	557.2751884490805	93.854	0.30443	93.854	93.686	93.991	0					7	5	2	0	0	0	0.73662	1	34544	34544		9.3474	0	1	748440	+		35292	18448	25883	26058	34323	34323					-0.0152781379777025
LWAIFMAYE	9	Unmodified	_LWAIFMAYE_					0	0	0			REV__ENSG00000151503|ENST00000534548|NCAPD3	REV__ENSG00000151503|ENST00000534548|NCAPD3	MSMS	A375_MHC_IP_R1	1	381.8094482421875	3	381.856294	1142.54705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.844	1	16.844	16.344	17.344	0								0	0	0	0.15486	1	3939	3939		0.23584	0	1		+		35293	19759	25884	26059	34324	34324					-0.01851831143335403
LWALWAMW	8	Unmodified	_LWALWAMW_					0	0	0		ENST00000441645.1_1_2:237317178-237317583:-|nuORF	ENST00000441645.1_1_2:237317178-237317583:-|nuORF	ENST00000441645.1_1_2:237317178-237317583:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	539.1751098632812	2	538.772948	1075.53134	-1.0552	-0.0005685	1.5566	0.00083867	0.50145	0.00027017	538.7736973805647	66.085	0.96814	66.824	66.222	67.191	0.73811					32	18	2	0	0	0	0.73552	1	24945	24945		24.21	4.953	1	6368300			35294	11984	25885	26060	34325	34325					-0.0034007286969881534
LWATFLSWTL	10	Unmodified	_LWATFLSWTL_					0	0	0			REV__nc|ENSG00000185332|Q8N8V8|TMEM105	REV__nc|ENSG00000185332|Q8N8V8|TMEM105	MSMS	A375_MHC_IP_R1	1	619.2608032226562	2	619.334424	1236.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.95	1	130.95	130.45	131.45	0								0	0	0	0.15372	1	50472	50472		8.7454	1.6437	1		+		35295	27413	25886	26061	34326	34326					0.04543462062542858
LWCIWHHWWLR	11	Unmodified	_LWCIWHHWWLR_					0	0	0			REV__SGMS1|p.Y307H|1|0.35|ENSG00000198964|chr10:50308125-50308125|A/G|missense_variant	REV__SGMS1|p.Y307H|1|0.35|ENSG00000198964|chr10:50308125-50308125|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	818.215576171875	2	818.41134	1634.80813	-0.82031	-0.00067135	4.1404	0.0033885	3.3201	0.0027172	818.4150336891415	131.2	0.30499	131.39	131.24	131.54	0.18953					8	5	3	0	0	0	0.73902	1	51577	51577		0.30703	0.30703	1	3965600	+		35296	27955	25887	26062	34327	34327					0.016115933470928212
LWCSGGGSCSC	11	Unmodified	_LWCSGGGSCSC_					0	0	0		ENST00000550159.5_1_12:56680357-56694091:-|nuORF;ENST00000549143.5_1_12:56677640-56694091:-|nuORF;ENST00000551430.6_1_12:56685548-56694145:-|nuORF;ENST00000551137.5_1_12:56685565-56694091:-|nuORF;ENST00000548849.5_1_12:56679784-56694145:-|nuORF;ENST00000551441.5_1_12:56680357-56694091:-|nuORF;ENST00000547283.5_1_12:56680283-56694145:-|nuORF	ENST00000550159.5_1_12:56680357-56694091:-|nuORF	ENST00000550159.5_1_12:56680357-56694091:-|nuORF	MSMS	A375_MHC_IP_R1	1	530.1722412109375	2	530.188262	1058.36197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.958	1	81.958	81.458	82.458	0								0	0	0	0.1624	1	29958	29958		6.2058	0.44535	1				35297	13342	25888	26063	34328	34328					-0.16487505276859338
LWDDKLLCHWE	11	Unmodified	_LWDDKLLCHWE_					0	0	0			REV__ENSG00000164142|ENST00000435205|FHIP1A	REV__ENSG00000164142|ENST00000435205|FHIP1A	MULTI-MSMS	A375_MHC_IP_R2	2	486.96722412109375	3	486.567583	1456.68092	-0.91178	-0.00044364	0.14569	7.0889E-05	-0.76609	-0.00037276	486.567699931471	19.933	0.40322	20.543	20.349	20.752	0.6103					11	7	2	0	0	0	0.73807	1	6172	6172		1.2148	0	1	956020	+		35298	20457	25889	26064	34329	34329					-0.02915217108397883
LWEFIRDI	8	Unmodified	_LWEFIRDI_					0	0	0		nc|ENSG00000135373|Q9NZC4-2|EHF;ENSG00000135373|ENST00000257831|EHF;nc|ENSG00000135373|Q9NZC4-3|EHF;EHF|p.N219S|1|0.3|ENSG00000135373|chr11:34658581-34658581|A/G|missense_variant;ENST00000475698.1_1_1:201982922-201984448:+|nuORF;nc|ENSG00000163435|P78545-2|ELF3;ENSG00000163435|ENST00000367284|ELF3	nc|ENSG00000135373|Q9NZC4-2|EHF;ENST00000475698.1_1_1:201982922-201984448:+|nuORF	ENST00000475698.1_1_1:201982922-201984448:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6976318359375	2	546.297842	1090.58113	-0.52147	-0.00028488	-0.10485	-5.7277E-05	-0.62632	-0.00034216	546.2976146143835	77.556	0.7625	77.556	77.184	77.946	0					33	14	4	0	0	0	0.90224	1	28262	28262		19.439	0	1	15152000			35299	4677;6662	25890	26065	34330	34330					0.039463333399453404
LWEPSKQRHLW	11	Unmodified	_LWEPSKQRHLW_					0	0	0			REV__ENST00000436639.6_1_6:109415622-109415931:-|nuORF	REV__ENST00000436639.6_1_6:109415622-109415931:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	740.1480712890625	2	740.39641	1478.77827	-0.78271	-0.00057952	-0.61952	-0.00045869	-1.4022	-0.0010382	740.3957318328502	132.66	0.51044	132.66	132.38	132.89	0					12	9	2	0	0	0	1.0008	1	51093	51093		4.5289	3.1993	1	1576800	+		35300	24767	25891	26066	34331	34331					0.058029328827615245
LWEVEVRV	8	Unmodified	_LWEVEVRV_					0	0	0		ENST00000467056.5_1_3:4536161-4687445:+|nuORF	ENST00000467056.5_1_3:4536161-4687445:+|nuORF	ENST00000467056.5_1_3:4536161-4687445:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	515.189697265625	2	515.290017	1028.56548	-0.55687	-0.00028695	2.3108	0.0011907	1.7539	0.00090378	515.2912922995913	61.457	0.61279	61.457	60.973	61.585	0					16	11	2	0	0	0	0.73111	1	22122	22122		25.399	2.2509	1	2454500			35301	12274	25892	26067	34332	34332					0.05234046822897653
LWEWVHRKTWY	11	Unmodified	_LWEWVHRKTWY_					0	0	0			REV__nc|ENSG00000135374|Q9UKW6-3|ELF5	REV__nc|ENSG00000135374|Q9UKW6-3|ELF5	MSMS	A375_MHC_IP_R1	1	802.2974853515625	2	802.41206	1602.80957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.12	1	118.12	117.62	118.62	0								0	0	0	0.16307	1	43438	43438		2.7352	1.2533	1		+		35302	18846	25893	26068	34333	34333					0.03227505916834161
LWFKFQRYFRQ	11	Unmodified	_LWFKFQRYFRQ_					0	0	0		WSCD2|p.R14Q|1|0.33|ENSG00000075035|chr12:108195873-108195873|G/A|missense_variant	WSCD2|p.R14Q|1|0.33|ENSG00000075035|chr12:108195873-108195873|G/A|missense_variant	WSCD2|p.R14Q|1|0.33|ENSG00000075035|chr12:108195873-108195873|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	809.934326171875	2	809.935702	1617.85685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.482	1	85.482	84.982	85.982	0								0	0	0	0.16354	1	31328	31328		0.30703	0.30703	1				35303	30167	25894	26069	34334	34334					0.07263785187819849
LWFKVKKMP	9	Unmodified	_LWFKVKKMP_					0	0	0		nc|ENSG00000170289|Q9NQW8-2|CNGB3;ENSG00000170289|ENST00000320005|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	MULTI-SECPEP	A375_MHC_IP_R1	1	589.07080078125	2	588.85173	1175.68891	-0.56489	-0.00033264	-0.79468	-0.00046795	-1.3596	-0.00080058	588.850980618968	133.75	0.55946	133.75	133.61	134.17	0					18	10	3	0	0	0	0.8028	1	51569	51569		4.3292	3.7277	1	5156200			35304	7489	25895	26070	34335	34335					0.10809006669660448
LWFLWTGL	8	Unmodified	_LWFLWTGL_					0	0	0		ENST00000532572.1_1_11:86644220-86644259:+|nuORF	ENST00000532572.1_1_11:86644220-86644259:+|nuORF	ENST00000532572.1_1_11:86644220-86644259:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	518.6853637695312	2	518.286746	1034.55894	-0.79282	-0.00041091	-1.1282	-0.00058473	-1.921	-0.00099564	518.2859998075666	65.235	0.71091	65.973	65.461	66.172	0.73812					23	13	2	0	0	0	0.7479	1	24747	24747		20.871	0.41758	1	2784100			35305	13186	25896	26071	34336	34336					0.04304153662178578
LWGICDGMSIY	11	Unmodified	_LWGICDGMSIY_					0	0	0			REV__ENSG00000155918|ENST00000367341|RAET1L	REV__ENSG00000155918|ENST00000367341|RAET1L	MULTI-MSMS	A375_MHC_IP_R1	1	629.6837158203125	2	629.28576	1256.55697	-0.50393	-0.00031711	-1.1536	-0.00072595	-1.6575	-0.0010431	629.2847735058368	72.622	0.50803	72.622	72.372	72.88	0					21	9	3	0	0	0	0.52598	1	26445	26445		29.082	2.8134	1	2368000	+		35306	19950	25897	26072	34337	34337					-0.06105011200224908
LWHLCHPPGW	10	Unmodified	_LWHLCHPPGW_					0	0	0		nc|ENSG00000158850|O60512-2|B4GALT3	nc|ENSG00000158850|O60512-2|B4GALT3	nc|ENSG00000158850|O60512-2|B4GALT3	MSMS	A375_MHC_IP_R2	2	623.2996215820312	2	623.302936	1244.59132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.08	1	149.1	148.6	149.6	0.018707								0	0	0	0.15585	1	57873	57873		1.8442	0	1				35307	14702	25898	26073	34338	34338					-0.021193822064788037
LWHRLRRGR	9	Unmodified	_LWHRLRRGR_					0	0	0			REV__ENST00000308595.9_1_11:67051219-67051395:+|nuORF	REV__ENST00000308595.9_1_11:67051219-67051395:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	625.7769775390625	2	625.378689	1248.74283	-0.90119	-0.00056359	-0.021608	-1.3513E-05	-0.9228	-0.0005771	625.3778282819221	149.38	2.1776	149.38	147.83	150	0					218	69	4	0	0	0	0.77154	1	56941	56941		0.6015	0	1	1046400	+		35308	23483	25899	26074	34339	34339					0.12840359936262757
LWHRLRRGR	9	Unmodified	_LWHRLRRGR_					0	0	0			REV__ENST00000308595.9_1_11:67051219-67051395:+|nuORF	REV__ENST00000308595.9_1_11:67051219-67051395:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	625.7777709960938	2	625.378689	1248.74283	-0.60328	-0.00037728	-0.033837	-2.1161E-05	-0.63712	-0.00039844	625.377785018685	149.37	1.8348	149.38	148.18	150.01	0.01825					226	66	4	0	0	0	0.77154	1	58000	58000		0.6015	0	1	758490	+		35309	23483	25899	26074	34340	34340					0.12840359936262757
LWHRLRRGR	9	Unmodified	_LWHRLRRGR_					0	0	0			REV__ENST00000308595.9_1_11:67051219-67051395:+|nuORF	REV__ENST00000308595.9_1_11:67051219-67051395:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	625.378689	1248.74283	-0.90119	-0.00056359	-0.021608	-1.3513E-05	-0.9228	-0.0005771	625.3778282819221	149.38	2.1776	149.38	147.83	150	0	-0.0020351	7.6461E-06	NaN	0.6015	218	69	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1046400	+		35310	23483	25899	26074							0.12840359936262757
LWHRLRRGR	9	Unmodified	_LWHRLRRGR_					0	0	0			REV__ENST00000308595.9_1_11:67051219-67051395:+|nuORF	REV__ENST00000308595.9_1_11:67051219-67051395:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	625.378689	1248.74283	-0.60328	-0.00037728	-0.033837	-2.1161E-05	-0.63712	-0.00039844	625.377785018685	149.37	1.8348	149.38	148.18	150.01	0.01825	0.0020351	-7.6495E-06	NaN	0.6015	226	66	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	758490	+		35311	23483	25899	26074							0.12840359936262757
LWKDAAAL	8	Unmodified	_LWKDAAAL_					0	0	0			REV__ENSG00000109576|ENST00000337664|AADAT	REV__ENSG00000109576|ENST00000337664|AADAT	MULTI-SECPEP	A375_MHC_IP_R1	1	444.9654541015625	2	444.252903	886.491253	-0.13009	-5.7792E-05	-0.11928	-5.2988E-05	-0.24936	-0.00011078	444.2523696746554	77.065	0.30536	77.065	76.878	77.184	0					9	5	2	0	0	0	0.972	1	28089	28089		5.7604	3.1829	1	508350	+		35312	17583	25900	26075	34341	34341					0.04346703731357593
LWKFRWRETVF	11	Unmodified	_LWKFRWRETVF_					0	0	0		ENST00000487919.5_1_2:36785633-36788595:-|nuORF	ENST00000487919.5_1_2:36785633-36788595:-|nuORF	ENST00000487919.5_1_2:36785633-36788595:-|nuORF	MSMS	A375_MHC_IP_R1	1	784.1270141601562	2	784.430253	1566.84595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.54	1	114.54	114.04	115.04	0								0	0	0	0.16331	1	42006	42006		1.4819	0.15237	1				35313	12605	25901	26076	34342	34342					0.08520382813503602
LWKHIWRE	8	Unmodified	_LWKHIWRE_					0	0	0		ENST00000464356.6_2_1:156436618-156436717:-|nuORF	ENST00000464356.6_2_1:156436618-156436717:-|nuORF	ENST00000464356.6_2_1:156436618-156436717:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	390.2848815917969	3	389.885576	1166.6349	-0.29252	-0.00011405	-1.5434	-0.00060174	-1.8359	-0.00071579	389.88517131046643	62.375	0.50944	63.117	62.874	63.383	0.74263					19	9	3	0	0	0	0.93777	1	23655	23655		22.736	5.6234	1	2153100			35314	12224	25902	26077	34343	34343					0.05824550562329023
LWKMRLFQRQW	11	Unmodified	_LWKMRLFQRQW_					0	0	0		ENSG00000215910|ENST00000688073|C1orf167;nc|nan|Q5SNV9-2|C1orf167;nc|nan|Q5SNV9-3|C1orf167;ENST00000484153.1_1_1:11826815-11837330:+|nuORF	ENSG00000215910|ENST00000688073|C1orf167	ENSG00000215910|ENST00000688073|C1orf167	MULTI-MSMS	A375_MHC_IP_R2	2	531.3594360351562	3	531.294129	1590.86056	-0.81524	-0.00043313	0.014325	7.6109E-06	-0.80091	-0.00042552	531.2940818993152	54.847	1.3718	55.598	54.865	56.237	0.75075					79	26	5	0	0	0	0.73795	1	20878	20878		1.3296	0.87513	1	210590000			35315	9650	25903	26078	34344	34344					0.08876131690044531
LWKNYFRLWET	11	Unmodified	_LWKNYFRLWET_					0	0	0			REV__ENST00000473707.5_1_7:140051761-140069464:-|nuORF	REV__ENST00000473707.5_1_7:140051761-140069464:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	778.8074951171875	2	778.406444	1554.79833	-1.1609	-0.00090369	1.6763	0.0013048	0.51533	0.00040114	778.407721582576	49.153	0.35578	49.911	49.69	50.046	0.75737					16	6	3	0	0	0	0.73809	1	18499	18499		1.1933	0.88631	1	3610400	+		35316	20045	25904	26079	34345	34345					0.043126838227181
LWKRLLFRKRR	11	Unmodified	_LWKRLLFRKRR_					0	0	0			REV__ENSG00000023171|ENST00000635736|GRAMD1B	REV__ENSG00000023171|ENST00000635736|GRAMD1B	MSMS	A375_MHC_IP_R2	2	786.512939453125	2	786.509703	1571.00485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.92	1	113.64	113.14	114.14	0.72458								0	0	0	0.16358	1	42570	42570		0.30703	0	1		+		35317	16274	25905	26080	34346	34346					0.2421914123233364
LWKRRKLKHLK	11	Unmodified	_LWKRRKLKHLK_					0	0	0		ENST00000542123.5_1_12:12966350-12967071:+|nuORF	ENST00000542123.5_1_12:12966350-12967071:+|nuORF	ENST00000542123.5_1_12:12966350-12967071:+|nuORF	MSMS	A375_MHC_IP_R1	1	753.1981201171875	2	753.498804	1504.98306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.64	1	112.64	112.14	113.14	0								0	0	0	0.1636	1	41284	41284		0	0	1				35318	13295	25906	26081	34347	34347					0.2507633648376668
LWKSERKI	8	Unmodified	_LWKSERKI_					0	0	0		ENST00000402924.5_1_7:43843373-43843412:+|nuORF	ENST00000402924.5_1_7:43843373-43843412:+|nuORF	ENST00000402924.5_1_7:43843373-43843412:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	354.2816467285156	3	353.881831	1058.62366	-0.32071	-0.00011349	0.0015983	5.6562E-07	-0.31911	-0.00011293	353.8818155008455	23.813	0.456	23.813	23.687	24.143	0					15	8	2	0	0	0	0.7011	1	6639	6639		34.402	5.3201	1	12364000			35319	11570	25907	26082	34348	34348					0.09669728468179528
LWKSERKI	8	Unmodified	_LWKSERKI_					0	0	0		ENST00000402924.5_1_7:43843373-43843412:+|nuORF	ENST00000402924.5_1_7:43843373-43843412:+|nuORF	ENST00000402924.5_1_7:43843373-43843412:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	354.28173828125	3	353.881831	1058.62366	-0.57312	-0.00020282	0.25309	8.9566E-05	-0.32002	-0.00011325	353.8818121841648	22.957	0.61253	23.587	23.164	23.777	0.63014					20	11	4	0	0	0	0.74543	1	7322	7322		21.537	4.4241	1	4199800			35320	11570	25907	26082	34349	34349					0.09669728468179528
LWLGRPAGRRR	11	Unmodified	_LWLGRPAGRRR_					0	0	0			REV__ENST00000361762.3_2_4:30722797-30723229:+|nuORF	REV__ENST00000361762.3_2_4:30722797-30723229:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1338.2017822265625	1	1337.80253	1336.79525	-0.36813	-0.00049248	-0.39451	-0.00052778	-0.76264	-0.0010203	1337.801636338988	149.26	1.6599	149.26	148.11	149.77	0					92	37	4	0	0	0	0.73897	1	57001	57001		0.35063	0	1	353550	+		35321	23923	25908	26083	34350	34350					0.14032898279174333
LWLIRYLRC	9	Unmodified	_LWLIRYLRC_					0	0	0			REV__ENST00000496055.5_1_1:76251925-76253282:+|nuORF	REV__ENST00000496055.5_1_1:76251925-76253282:+|nuORF	MSMS	A375_MHC_IP_R1	1	412.6314697265625	3	412.574233	1234.70087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.207	1	47.207	46.707	47.707	0								0	0	0	0.15486	1	16597	16597		8.7454	0.80001	1		+		35322	25149	25909	26084	34351	34351					0.09290623412857713
LWLLKRLP	8	Unmodified	_LWLLKRLP_					0	0	0		ENST00000534225.1_1_11:112024279-112034806:-|nuORF	ENST00000534225.1_1_11:112024279-112034806:-|nuORF	ENST00000534225.1_1_11:112024279-112034806:-|nuORF	MSMS	A375_MHC_IP_R1	1	519.7901000976562	2	519.844762	1037.67497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.095	1	83.095	82.595	83.595	0								0	0	0	0.16876	1	30399	30399		0.69038	0	1				35323	13209	25910	26085	34352	34352					0.15764097232886343
LWLYTWLKL	9	Unmodified	_LWLYTWLKL_					0	0	0			REV__ENST00000360565.7_2_19:50161652-50161889:+|nuORF	REV__ENST00000360565.7_2_19:50161652-50161889:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	412.9775390625	3	412.577749	1234.71142	-0.23751	-9.7992E-05	-1.075	-0.00044351	-1.3125	-0.0005415	412.577341771995	23.968	0.56027	24.598	24.384	24.944	0.63015					16	10	2	0	0	0	0.71902	1	7825	7825		5.2969	0.58097	1	2886200	+		35324	23894	25911	26086	34353	34353					0.10344929338930342
LWLYTWLKL	9	Unmodified	_LWLYTWLKL_					0	0	0			REV__ENST00000360565.7_2_19:50161652-50161889:+|nuORF	REV__ENST00000360565.7_2_19:50161652-50161889:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	412.577749	1234.71142	-0.23751	-9.7992E-05	-1.075	-0.00044351	-1.3125	-0.0005415	412.577341771995	23.968	0.56027	24.598	24.384	24.944	0.63015	-0.046508	0.00024721	NaN	5.2969	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2886200	+		35325	23894	25911	26086							0.10344929338930342
LWNRPRFSH	9	Unmodified	_LWNRPRFSH_					0	0	0		ENST00000456414.2_1_1:117035720-117035894:-|nuORF	ENST00000456414.2_1_1:117035720-117035894:-|nuORF	ENST00000456414.2_1_1:117035720-117035894:-|nuORF	MSMS	A375_MHC_IP_R1	1	404.9487609863281	3	404.884346	1211.63121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.664	1	30.664	30.164	31.164	0								0	0	0	0.15486	1	9765	9765		4.897	0.49086	1				35326	12135	25912	26087	34354	34354					0.03385880788459872
LWNYMELW	8	Unmodified	_LWNYMELW_					0	0	0		ENST00000530122.1_1_20:57266543-57280604:+|nuORF	ENST00000530122.1_1_20:57266543-57280604:+|nuORF	ENST00000530122.1_1_20:57266543-57280604:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	578.1696166992188	2	577.770603	1153.52665	-0.081061	-4.6835E-05	-1.0723	-0.00061953	-1.1533	-0.00066636	577.7702127126846	56.117	0.45553	56.117	55.891	56.347	0					13	8	2	0	0	0	0.92636	1	20090	20090		23.148	8.743	1	3998200			35327	13144	25913	26088	34355	34355					-0.04397001803135936
LWPEANHV	8	Unmodified	_LWPEANHV_					0	0	0			REV__ENSG00000175711|ENST00000320865|B3GNTL1	REV__ENSG00000175711|ENST00000320865|B3GNTL1	MULTI-MSMS	A375_MHC_IP_R1	1	483.64501953125	2	483.245609	964.476666	-0.29636	-0.00014322	-0.37285	-0.00018018	-0.66921	-0.00032339	483.2453639509066	59.674	0.45722	59.674	59.448	59.905	0					14	8	2	0	0	0	0.72109	1	21479	21479		28.173	3.4993	1	1350400	+		35328	21361	25914	26089	34356	34356					-0.006993684167696301
LWPEANHV	8	Unmodified	_LWPEANHV_					0	0	0			REV__ENSG00000175711|ENST00000320865|B3GNTL1	REV__ENSG00000175711|ENST00000320865|B3GNTL1	MULTI-SECPEP	A375_MHC_IP_R1	1	483.6318664550781	2	483.245609	964.476666	-0.29636	-0.00014322	-0.37285	-0.00018018	-0.66921	-0.00032339	483.2453639509066	59.674	0.45722	59.674	59.448	59.905	0					14	8	2	0	0	0	0.93416	1	21408	21408		14.582	1.0738	1	1350400	+		35329	21361	25914	26089	34357	34357					-0.006993684167696301
LWPEANHV	8	Unmodified	_LWPEANHV_					0	0	0			REV__ENSG00000175711|ENST00000320865|B3GNTL1	REV__ENSG00000175711|ENST00000320865|B3GNTL1	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6449279785156	2	483.245609	964.476666	-0.95002	-0.00045909	-0.30364	-0.00014673	-1.2537	-0.00060583	483.24538962091833	58.834	0.4063	59.581	59.387	59.793	0.74714					12	7	2	0	0	0	0.88799	1	22280	22280		20.871	0	1	1845300	+		35330	21361	25914	26089	34358	34358					-0.006993684167696301
LWPKIQGL	8	Unmodified	_LWPKIQGL_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	MULTI-SECPEP	A375_MHC_IP_R1	1	478.1919250488281	2	477.792195	953.569838	-0.68835	-0.00032889	0.21239	0.00010148	-0.47596	-0.00022741	477.7922410076188	91.067	0.45557	91.067	90.794	91.249	0					20	8	3	0	0	0	0.44468	1	33452	33452		63.563	23.114	1	2329000			35331	7273	25915	26090	34359	34359					0.09119556036466747
LWPKIQGL	8	Unmodified	_LWPKIQGL_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	MULTI-SECPEP	A375_MHC_IP_R2	2	478.1917724609375	2	477.792195	953.569838	-0.44262	-0.00021148	0.39833	0.00019032	-0.044292	-2.1162E-05	477.79228703245724	90.246	0.50915	90.978	90.699	91.208	0.7318					15	9	2	0	0	0	0.73563	1	34332	34332		44.407	16.234	1	2193700			35332	7273	25915	26090	34360	34360					0.09119556036466747
LWRIFHWKERL	11	Unmodified	_LWRIFHWKERL_					0	0	0		ENST00000360566.6_1_2:10269382-10269442:+|nuORF	ENST00000360566.6_1_2:10269382-10269442:+|nuORF	ENST00000360566.6_1_2:10269382-10269442:+|nuORF	MSMS	A375_MHC_IP_R1	1	528.6294555664062	3	528.636772	1582.88849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.227	1	83.227	82.727	83.727	0								0	0	0	0.1635	1	30450	30450		0.50596	0	1				35333	11033	25916	26091	34361	34361					0.12035777941787273
LWRILYKKTLW	11	Unmodified	_LWRILYKKTLW_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	A375_MHC_IP_R1	1	507.7099609375	3	507.309773	1518.90749	-0.64797	-0.00032872	0.49425	0.00025074	-0.15372	-7.7982E-05	507.30991522194137	133.19	0.9695	133.19	132.64	133.61	0					62	18	4	0	0	0	0.73896	1	51464	51464		0.36667	0.27183	1	23839000			35334	14846;9178	25917	26092	34362	34362					0.16879314512834753
LWRILYKKTLW	11	Unmodified	_LWRILYKKTLW_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	A375_MHC_IP_R1	1	760.8603515625	2	760.461022	1518.90749	-0.76247	-0.00057983	0.3274	0.00024897	-0.43507	-0.00033086	760.4611125833892	133.99	1.0146	133.99	133.56	134.57	0					61	19	4	0	0	0	0.73896	1	51692	51692		1.0715	0.76443	1	28546000			35335	14846;9178	25917	26092	34363	34363					0.16879314512834753
LWRILYKKTLW	11	Unmodified	_LWRILYKKTLW_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	A375_MHC_IP_R2	2	507.7095947265625	3	507.309773	1518.90749	-0.64714	-0.0003283	0.4928	0.00025	-0.15435	-7.8302E-05	507.3099258394159	133.94	1.5261	134.11	133.7	135.23	0.16487					100	29	5	0	0	0	0.73896	2	52685	52685;52906		0.36667	0.27183	1	40918000			35336	14846;9178	25917	26092	34364;34365	34364					0.16879314512834753
LWRILYKKTLW	11	Unmodified	_LWRILYKKTLW_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	760.461022	1518.90749	-0.76247	-0.00057983	0.3274	0.00024897	-0.43507	-0.00033086	760.4611125833892	133.99	1.0146	133.99	133.56	134.57	0	-0.04644	-0.00018557	NaN	1.0715	61	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28546000			35337	14846;9178	25917	26092							0.16879314512834753
LWRNCNFNYKD	11	Unmodified	_LWRNCNFNYKD_					0	0	0			REV__ENSG00000167210|ENST00000642948|LOXHD1	REV__ENSG00000167210|ENST00000642948|LOXHD1	MSMS	A375_MHC_IP_R2	2	491.4627685546875	3	491.562832	1471.66667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.004	1	32.741	32.241	33.241	0.73692								0	0	0	0.16269	1	11350	11350		4.7159	0.59929	1		+		35338	20742	25918	26093	34366	34366					-0.05029869536701881
LWRPWVWEWCR	11	Unmodified	_LWRPWVWEWCR_					0	0	0		ENSG00000175707|ENST00000320567|KDF1	ENSG00000175707|ENST00000320567|KDF1	ENSG00000175707|ENST00000320567|KDF1	MSMS	A375_MHC_IP_R1	1	539.6455688476562	3	539.602962	1615.78706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.82	1	27.82	27.32	28.32	0								0	0	0	0.16309	1	8492	8492		2.6312	1.4164	1				35339	7977	25919	26094	34367	34367					0.0037958324758164963
LWRQFWQKMLE	11	Unmodified	_LWRQFWQKMLE_					0	0	0		ENSG00000162733|ENST00000367921|DDR2	ENSG00000162733|ENST00000367921|DDR2	ENSG00000162733|ENST00000367921|DDR2	MULTI-MSMS	A375_MHC_IP_R2	2	522.6748657226562	3	522.274623	1563.80204	-0.53609	-0.00027998	0.44496	0.00023239	-0.091122	-4.7591E-05	522.6091940698674	73.575	0.71449	74.311	73.99	74.704	0.73541					24	13	3	0	0	0	0.73795	1	27924	27924		1.3296	0.82369	1	2036700			35340	6582	25920	26095	34368	34368					0.04269030324894629
LWRQPRRPIRI	11	Unmodified	_LWRQPRRPIRI_					0	0	0		nc|ENSG00000285188|Q08493|PDE4C	nc|ENSG00000285188|Q08493|PDE4C	nc|ENSG00000285188|Q08493|PDE4C	MSMS	A375_MHC_IP_R2	2	497.6473693847656	3	497.644149	1489.91062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.026	1	74.763	74.263	75.263	0.73752								0	0	0	0.16305	1	28096	28096		2.8433	1.5136	1				35341	14946	25921	26096	34369	34369					0.18526002410226283
LWRSPLIL	8	Unmodified	_LWRSPLIL_					0	0	0		ENST00000520191.5_1_8:30402888-30402969:+|nuORF	ENST00000520191.5_1_8:30402888-30402969:+|nuORF	ENST00000520191.5_1_8:30402888-30402969:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	499.71331787109375	2	499.313295	996.612037	-0.54923	-0.00027424	0.77128	0.00038511	0.22205	0.00011087	499.3133144857701	90.317	0.60931	90.317	90.032	90.641	0					19	11	3	0	0	0	0.73622	1	33220	33220		24.021	4.5816	1	1027200			35342	12988	25922	26097	34370	34370					0.11359531444861659
LWSFRRRRRKK	11	Unmodified	_LWSFRRRRRKK_					0	0	0		ENST00000331161.8_1_10:25304892-25304985:-|nuORF	ENST00000331161.8_1_10:25304892-25304985:-|nuORF	ENST00000331161.8_1_10:25304892-25304985:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	795.3911743164062	2	794.992209	1587.96987	-0.78485	-0.00062395	-0.19115	-0.00015196	-0.976	-0.00077591	794.9920126127345	142.58	0.30348	142.58	142.38	142.69	0					7	5	2	0	0	0	0.73934	1	54728	54728		0	0	1	1293500			35343	10768	25923	26098	34371	34371					0.19939898424377134
LWSFRRRRRKK	11	Unmodified	_LWSFRRRRRKK_					0	0	0		ENST00000331161.8_1_10:25304892-25304985:-|nuORF	ENST00000331161.8_1_10:25304892-25304985:-|nuORF	ENST00000331161.8_1_10:25304892-25304985:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	795.3916015625	2	794.992209	1587.96987	-0.75788	-0.00060251	-0.064732	-5.1462E-05	-0.82261	-0.00065397	794.9923157572869	142.63	0.20544	142.66	142.53	142.74	0.030731					6	3	2	0	0	0	0.73934	1	55780	55780		0	0	1	2144400			35344	10768	25923	26098	34372	34372					0.19939898424377134
LWSQIVRKLLI	11	Unmodified	_LWSQIVRKLLI_					0	0	0			REV__ENSG00000163617|ENST00000295878|CCDC191	REV__ENSG00000163617|ENST00000295878|CCDC191	MSMS	A375_MHC_IP_R2	2	684.9418334960938	2	684.939922	1367.86529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.34	1	112.08	111.58	112.58	0.73692								0	0	0	0.16302	1	41983	41983		2.9952	1.5133	1		+		35345	20384	25924	26099	34373	34373					0.19607339104459243
LWTEWRLV	8	Unmodified	_LWTEWRLV_					0	0	0		ENST00000417549.1_1_13:28789417-28789675:+|nuORF	ENST00000417549.1_1_13:28789417-28789675:+|nuORF	ENST00000417549.1_1_13:28789417-28789675:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	552.1834716796875	2	551.805834	1101.59712	-0.50124	-0.00027659	-0.019607	-1.0819E-05	-0.52085	-0.00028741	552.3075881430659	101.01	0.20278	101.01	100.94	101.14	0					5	3	2	0	0	0	0.94479	1	37148	37148		19.439	12.716	1	918900			35346	11701	25925	26100	34374	34374					0.05038039576834308
LWVERTSLY	9	Unmodified	_LWVERTSLY_					0	0	0		nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0|DOCK4	nc|ENSG00000128512|Q8N1I0|DOCK4	MULTI-SECPEP	A375_MHC_IP_R1	1	584.2137451171875	2	583.813856	1165.61316	-0.33145	-0.00019351	-0.28924	-0.00016886	-0.62069	-0.00036237	583.8135404215767	89.927	0.80894	89.927	89.476	90.285	0					20	12	3	0	0	0	0.39388	1	33059	33059		32.305	0	1	3347000			35347	4139	25926	26101	34375	34375					0.03697701023111222
LWWQQMYAHQY	11	Unmodified	_LWWQQMYAHQY_					0	0	0		ENSG00000122557|ENST00000311350|HERPUD2	ENSG00000122557|ENST00000311350|HERPUD2	ENSG00000122557|ENST00000311350|HERPUD2	MSMS	A375_MHC_IP_R1	1	518.6297607421875	3	518.571328	1552.69215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.622	1	36.622	36.122	37.122	0								0	0	0	0.16336	1	12270	12270		1.2148	0.80657	1				35348	3791	25927	26102	34376	34376					-0.062083950142323374
LWWRNWFWVHF	11	Unmodified	_LWWRNWFWVHF_					0	0	0		ENST00000437634.1_1_2:154277901-154278186:-|nuORF	ENST00000437634.1_1_2:154277901-154278186:-|nuORF	ENST00000437634.1_1_2:154277901-154278186:-|nuORF	MSMS	A375_MHC_IP_R1	1	559.5119018554688	3	559.613967	1675.82007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.005	1	24.005	23.505	24.505	0								0	0	0	0.1635	1	6709	6709		0.50596	0.4226	1				35349	11942	25928	26103	34377	34377					0.009195333619118173
LWWRNWFWVHF	11	Unmodified	_LWWRNWFWVHF_					0	0	0		ENST00000437634.1_1_2:154277901-154278186:-|nuORF	ENST00000437634.1_1_2:154277901-154278186:-|nuORF	ENST00000437634.1_1_2:154277901-154278186:-|nuORF	MSMS	A375_MHC_IP_R2	2	559.6671142578125	3	559.613967	1675.82007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.608	1	22.228	21.728	22.728	0.61932								0	0	0	0.1635	1	6819	6819		0.50596	0.4226	1				35350	11942	25928	26103	34378	34378					0.009195333619118173
LWWRNWFWVHF	11	Unmodified	_LWWRNWFWVHF_					0	0	0		ENST00000437634.1_1_2:154277901-154278186:-|nuORF	ENST00000437634.1_1_2:154277901-154278186:-|nuORF	ENST00000437634.1_1_2:154277901-154278186:-|nuORF	MSMS	A375_MHC_IP_R2	2	559.5120239257812	3	559.613967	1675.82007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.74	1	24.371	23.871	24.871	0.63014								0	0	0	0.16358	1	7689	7689		0.094841	0	1				35351	11942	25928	26103	34379	34379					0.009195333619118173
LWWRRRRHLK	10	Unmodified	_LWWRRRRHLK_					0	0	0			REV__ENST00000297293.5_1_7:97832983-97833265:+|nuORF	REV__ENST00000297293.5_1_7:97832983-97833265:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	502.669189453125	3	502.972489	1505.89564	-0.71768	-0.00036097	-1.9562	-0.00098394	-2.6739	-0.0013449	503.3058240162847	32.892	0.30521	33.629	33.468	33.773	0.73692					7	5	2	0	0	0	0.95034	1	11780	11780		0.13989	0	1	1448400	+		35352	23396	25929	26104	34380	34380					0.16292555332870506
LWWRRRWTRSQ	11	Unmodified	_LWWRRRWTRSQ_					0	0	0		ENST00000554052.2_2_14:35515721-35519263:+|nuORF;ENST00000280987.8_1_14:35515634-35522487:+|nuORF	ENST00000554052.2_2_14:35515721-35519263:+|nuORF	ENST00000554052.2_2_14:35515721-35519263:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	544.6746826171875	3	544.299042	1629.8753	-0.50883	-0.00027695	0.66783	0.0003635	0.159	8.6546E-05	544.2993324748498	53.6	0.50937	53.6	53.352	53.861	0					25	9	4	0	0	0	0.73881	1	19109	19109		0.50596	0.50596	1	7216000			35353	10422	25930	26105	34381	34381					0.08555339882400403
LWWRRRWTRSQ	11	Unmodified	_LWWRRRWTRSQ_					0	0	0		ENST00000554052.2_2_14:35515721-35519263:+|nuORF;ENST00000280987.8_1_14:35515634-35522487:+|nuORF	ENST00000554052.2_2_14:35515721-35519263:+|nuORF	ENST00000554052.2_2_14:35515721-35519263:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	545.0333251953125	3	544.299042	1629.8753	-1.3242	-0.00072076	0.49013	0.00026678	-0.83407	-0.00045398	544.2994595535374	52.847	0.50699	53.598	53.335	53.842	0.75105					25	9	4	0	0	0	0.73881	2	19929	19929;19959		0.50596	0.50596	1	8847500			35354	10422	25930	26105	34382;34383	34382					0.08555339882400403
LWWRRRWTRSQ	11	Unmodified	_LWWRRRWTRSQ_					0	0	0		ENST00000554052.2_2_14:35515721-35519263:+|nuORF;ENST00000280987.8_1_14:35515634-35522487:+|nuORF	ENST00000554052.2_2_14:35515721-35519263:+|nuORF	ENST00000554052.2_2_14:35515721-35519263:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	544.1818237304688	3	544.299042	1629.8753	-1.1246	-0.00061211	1.9341	0.0010527	0.80949	0.00044061	544.3003712091124	57.642	0.30682	58.391	58.17	58.477	0.74894					8	5	2	0	0	0	1.0004	1	21795	21795		0.40827	0	1	823850			35355	10422	25930	26105	34384	34384					0.08555339882400403
LWWRRRWTRSQ	11	Unmodified	_LWWRRRWTRSQ_					0	0	0		ENST00000554052.2_2_14:35515721-35519263:+|nuORF;ENST00000280987.8_1_14:35515634-35522487:+|nuORF	ENST00000554052.2_2_14:35515721-35519263:+|nuORF	ENST00000554052.2_2_14:35515721-35519263:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	544.6467895507812	3	544.299042	1629.8753	-1.4094	-0.00076714	0.98224	0.00053463	-0.42717	-0.00023251	544.2996042060006	53.311	0.45902	54.062	53.79	54.249	0.75105					24	8	4	0	0	0	1.0014	1	20012	20012		0.08335	0	1	12164000			35356	10422	25930	26105	34385	34385					0.08555339882400403
LWYLRRRPQK	10	Unmodified	_LWYLRRRPQK_					0	0	0			REV__ENST00000333762.5_1_3:129033834-129033906:-|nuORF	REV__ENST00000333762.5_1_3:129033834-129033906:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	708.8218994140625	2	708.422762	1414.83097	-0.95014	-0.0006731	-1.1345	-0.00080373	-2.0847	-0.0014768	708.4219745995022	143.58	0.6925	143.58	143.19	143.89	0					17	13	2	0	0	0	0.72645	1	54990	54990		0.45834	0	1	742440	+		35357	23649	25931	26106	34386	34386					0.14014935736190637
LWYLRRRPQK	10	Unmodified	_LWYLRRRPQK_					0	0	0			REV__ENST00000333762.5_1_3:129033834-129033906:-|nuORF	REV__ENST00000333762.5_1_3:129033834-129033906:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	708.422762	1414.83097	-0.95014	-0.0006731	-1.1345	-0.00080373	-2.0847	-0.0014768	708.4219745995022	143.58	0.6925	143.58	143.19	143.89	0	-0.058672	-4.8477E-05	NaN	0.45834	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	742440	+		35358	23649	25931	26106							0.14014935736190637
LWYLRRRPQK	10	Unmodified	_LWYLRRRPQK_					0	0	0			REV__ENST00000333762.5_1_3:129033834-129033906:-|nuORF	REV__ENST00000333762.5_1_3:129033834-129033906:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	708.422762	1414.83097	-0.54355	-0.00038506	-1.0789	-0.00076429	-1.6224	-0.0011494	708.4218778278772	143.67	0.50409	143.7	143.34	143.84	0.024414	0.058672	3.0401E-05	NaN	0.45834	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	577790	+		35359	23649	25931	26106							0.14014935736190637
LYAKIKTI	8	Unmodified	_LYAKIKTI_					0	0	0			REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	MSMS	A375_MHC_IP_R1	1	475.61669921875	2	475.307678	948.600803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.172	1	75.172	74.672	75.672	0								0	0	0	0.16876	1	27385	27385		0.69038	0	1		+		35360	28415	25932	26107	34387	34387					0.1244470935072286
LYALGVSYAIV	11	Unmodified	_LYALGVSYAIV_					0	0	0		tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1	tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1	tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	584.1337280273438	2	584.834257	1167.65396	-0.4803	-0.0002809	0.30677	0.00017941	-0.17353	-0.00010149	584.8344251191643	96.232	0.45698	96.982	96.754	97.211	0.75045					14	8	2	0	0	0	0.86298	1	36577	36577		13.906	3.0821	1	1467400			35361	29955	25933	26108	34388	34388					0.07684042342702924
LYCGLLWFL	9	Unmodified	_LYCGLLWFL_					0	0	0			REV__ENST00000451805.2_1_1:220440715-220441180:-|nuORF	REV__ENST00000451805.2_1_1:220440715-220441180:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	565.2017822265625	2	564.301539	1126.58852	-0.59705	-0.00033692	0.14514	8.1903E-05	-0.45191	-0.00025502	564.301359257827	55.247	0.60968	55.998	55.678	56.287	0.75075					23	11	3	0	0	0	0.67332	1	20862	20862		14.582	5.9884	1	2915100	+		35362	24896	25934	26109	34389	34389					0.03029349615985666
LYCGLLWFL	9	Unmodified	_LYCGLLWFL_					0	0	0			REV__ENST00000451805.2_1_1:220440715-220441180:-|nuORF	REV__ENST00000451805.2_1_1:220440715-220441180:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	564.301539	1126.58852	-0.59705	-0.00033692	0.14514	8.1903E-05	-0.45191	-0.00025502	564.301359257827	55.247	0.60968	55.998	55.678	56.287	0.75075	-0.057358	-8.6391E-05	NaN	14.582	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2915100	+		35363	24896	25934	26109							0.03029349615985666
LYCYHCIY	8	Unmodified	_LYCYHCIY_					0	0	0		ENST00000609928.5_3_1:179821843-179834581:-|nuORF	ENST00000609928.5_3_1:179821843-179834581:-|nuORF	ENST00000609928.5_3_1:179821843-179834581:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	539.2085571289062	2	539.230256	1076.44596	-0.73806	-0.00039798	0.61353	0.00033083	-0.12453	-6.715E-05	539.2306138267058	76.682	1.016	76.682	76.117	77.133	0					36	19	3	0	0	0	0.77554	1	28042	28042		11.114	0.93107	1	2766500			35364	13940	25935	26110	34390	34390					-0.08920606117681018
LYCYRPFGR	9	Unmodified	_LYCYRPFGR_					0	0	0			REV__DTX1|p.H535Y|1|0.21|ENSG00000135144|chr12:113095379-113095379|C/T|missense_variant	REV__DTX1|p.H535Y|1|0.21|ENSG00000135144|chr12:113095379-113095379|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	587.7277221679688	2	587.794943	1173.57533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.211	1	93.95	93.45	94.45	0.73902								0	0	0	0.15486	1	35438	35438		11.64	1.5664	1		+		35365	16043	25936	26111	34391	34391					-0.004510884433557294
LYDCIQKTL	9	Unmodified	_LYDCIQKTL_					0	0	0		GCLM|p.H44Y|1|0.32|ENSG00000023909|chr1:93904585-93904585|G/A|missense_variant	GCLM|p.H44Y|1|0.32|ENSG00000023909|chr1:93904585-93904585|G/A|missense_variant	GCLM|p.H44Y|1|0.32|ENSG00000023909|chr1:93904585-93904585|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	549.18701171875	2	548.788992	1095.56343	-0.85638	-0.00046997	2.5116	0.0013783	1.6552	0.00090836	549.2903430414636	70.823	0.86054	71.557	71.099	71.959	0.73421					35	16	3	0	0	0	0.27715	1	26745	26745		32.305	2.0807	1	6529200			35366	14039	25937	26112	34392	34392					0.019472500227720957
LYDERKVLY	9	Unmodified	_LYDERKVLY_					0	0	0			REV__nc|ENSG00000259112|E9PQ53|NDUFC2-KCTD14	REV__nc|ENSG00000259112|E9PQ53|NDUFC2-KCTD14	MULTI-SECPEP	A375_MHC_IP_R1	1	400.6202392578125	3	400.220401	1197.63937	-0.24164	-9.6709E-05	0.16668	6.6709E-05	-0.074958	-3E-05	400.2204010303298	36.059	0.76242	36.059	35.778	36.541	0					23	14	2	0	0	0	0.61758	1	12022	12022		27.223	1.2025	1	12412000	+		35367	19749	25938	26113	34393	34393					0.0484597019458306
LYDEWSLEV	9	Unmodified	_LYDEWSLEV_					0	0	0			REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	MULTI-SECPEP	A375_MHC_IP_R2	2	577.6739501953125	2	577.274229	1152.53391	-0.13561	-7.8282E-05	0.084035	4.8511E-05	-0.051572	-2.9771E-05	577.273583445625	103.86	0.96345	104.62	103.99	104.95	0.76428					36	18	3	0	0	0	0.40041	1	39320	39320		30.225	6.2042	1	2396600	+		35368	20427	25939	26114	34394	34394					-0.036259907217072396
LYDGWFADLY	10	Unmodified	_LYDGWFADLY_					0	0	0			REV__nc|ENSG00000160570|Q8WXF8-2|DEDD2	REV__nc|ENSG00000160570|Q8WXF8-2|DEDD2	MSMS	A375_MHC_IP_R1	1	631.7552490234375	2	631.790047	1261.56554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.86	1	105.86	105.36	106.36	0								0	0	0	0.15105	1	38861	38861		15.847	5.0233	1		+		35369	20175	25940	26115	34395	34395					-0.054779979677732626
LYDKKQQE	8	Unmodified	_LYDKKQQE_					0	0	0			REV__tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1	REV__tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	525.5962524414062	2	526.274564	1050.53457	-0.47685	-0.00025096	0.12	6.3154E-05	-0.35685	-0.0001878	526.2751580586976	64.943	0.45803	65.681	65.359	65.817	0.73812					15	8	2	0	0	0	0.94479	1	24538	24538		19.439	4.1905	1	1517100	+		35370	28189	25941	26116	34396	34396					0.011328487179980584
LYDLELIVN	9	Unmodified	_LYDLELIVN_					0	0	0		ENSG00000136881|ENST00000259407|BAAT	ENSG00000136881|ENST00000259407|BAAT	ENSG00000136881|ENST00000259407|BAAT	MSMS	A375_MHC_IP_R1	1	546.3041381835938	2	546.30279	1090.59103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.757	1	87.757	87.257	88.257	0								0	0	0	0.15486	1	32206	32206		10.824	0	1				35371	4836	25942	26117	34397	34397					0.04935476554669549
LYDNKLQTI	9	Unmodified	_LYDNKLQTI_					0	0	0		nc|ENSG00000184347|O75094-3|SLIT3;ENSG00000184347|ENST00000519560|SLIT3;nc|ENSG00000184347|O75094-4|SLIT3;SLIT3|p.S409F|1|0.64|ENSG00000184347|chr5:168774304-168774304|G/A|missense_variant;SLIT2|p.A412V|1|0.43|ENSG00000145147|chr4:20523864-20523864|C/T|missense_variant;ENST00000519486.5_1_5:168179958-168216668:-|nuORF;ENST00000518140.5_1_5:168199753-168727722:-|nuORF;nc|ENSG00000184347|O75094-2|SLIT3;nc|ENSG00000145147|O94813-3|SLIT2;nc|ENSG00000145147|O94813-2|SLIT2;ENSG00000145147|ENST00000504154|SLIT2	nc|ENSG00000184347|O75094-3|SLIT3	nc|ENSG00000184347|O75094-3|SLIT3	MULTI-SECPEP	A375_MHC_IP_R1	1	554.7054443359375	2	554.305864	1106.59717	-0.46394	-0.00025716	0.11214	6.2158E-05	-0.3518	-0.00019501	554.305769777728	97.386	0.40303	97.386	97.137	97.54	0					12	7	2	0	0	0	0.65246	1	35819	35819		15.847	10.95	1	1406400			35372	8574	25943	26118	34398	34398					0.04813994786195508
LYDNRKKI	8	Unmodified	_LYDNRKKI_					0	0	0		tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1	tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1	tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6929931640625	2	525.308741	1048.60293	-0.73131	-0.00038416	-2.2312	-0.0011721	-2.9625	-0.0015562	525.8085508393783	66.81	0.35637	66.81	66.684	67.04	0					9	6	2	0	0	0	0.972	1	24201	24201		8.5933	0.68312	1	1471500			35373	29484	25944	26119	34399	34399					0.08057138088520333
LYDPHLRVP	9	Unmodified	_LYDPHLRVP_					0	0	0			REV__ENST00000479007.5_1_7:1474234-1478659:-|nuORF	REV__ENST00000479007.5_1_7:1474234-1478659:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	370.6046142578125	3	370.541586	1108.60293	0.0096488	3.5753E-06	0.28507	0.00010563	0.29472	0.00010921	370.541621066159	21.59	0.6637	22.21	21.979	22.643	0.61932					20	12	2	0	0	0	0.73415	1	6743	6743		2.2828	0.19677	1	7319900	+		35374	20521	25945	26120	34400	34400					0.05297138088508291
LYDPPFSYQP	10	Unmodified	_LYDPPFSYQP_					0	0	0			REV__ENST00000471717.1_1_7:99772169-99774834:-|nuORF	REV__ENST00000471717.1_1_7:99772169-99774834:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	613.174560546875	2	613.790047	1225.56554	-0.50246	-0.00030841	-1.5626	-0.00095912	-2.0651	-0.0012675	613.7889936696805	53.123	0.55625	53.123	52.694	53.25	0					15	10	2	0	0	0	0.91556	1	18787	18787		6.2058	0.47393	1	1622000	+		35375	22622	25946	26121	34401	34401					-0.03821997967770585
LYDPPFSYQP	10	Unmodified	_LYDPPFSYQP_					0	0	0			REV__ENST00000471717.1_1_7:99772169-99774834:-|nuORF	REV__ENST00000471717.1_1_7:99772169-99774834:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	613.790047	1225.56554	-0.98915	-0.00060713	-2.2938	-0.0014079	-3.283	-0.002015	614.2904096282017	52.385	0.60674	53.138	52.882	53.489	0.75225	0.0071829	-0.00039929	NaN	6.2058	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2100400	+		35376	22622	25946	26121							-0.03821997967770585
LYDYMDHH	8	Unmodified	_LYDYMDHH_					0	0	0			REV__ENSG00000079462|ENST00000262890|PAFAH1B3	REV__ENSG00000079462|ENST00000262890|PAFAH1B3	MSMS	A375_MHC_IP_R2	2	547.17138671875	2	547.224017	1092.43348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.73	1	102.5	102	103	0.76428								0	0	0	0.16876	1	38559	38559		5.7604	0	1		+		35377	16734	25947	26122	34402	34402					-0.1090392625635559
LYEAYCIQRRL	11	Unmodified	_LYEAYCIQRRL_					0	0	0		nc|ENSG00000111913|Q9Y4F9-2|RIPOR2;ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2	nc|ENSG00000111913|Q9Y4F9-2|RIPOR2	nc|ENSG00000111913|Q9Y4F9-2|RIPOR2	MSMS	A375_MHC_IP_R2	2	476.485107421875	3	476.586978	1426.7391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.018	1	75.755	75.255	76.255	0.73752								0	0	0	0.16332	1	28473	28473		1.4551	0	1				35378	3042	25948	26123	34403	34403					0.04280464536850559
LYECNPMAY	9	Unmodified	_LYECNPMAY_					0	0	0		ENSG00000165140|ENST00000375326|FBP1	ENSG00000165140|ENST00000375326|FBP1	ENSG00000165140|ENST00000375326|FBP1	MULTI-MSMS	A375_MHC_IP_R1	1	552.6775512695312	2	552.230453	1102.44635	-0.59773	-0.00033008	0.84368	0.0004659	0.24595	0.00013582	552.2324127084555	64.55	0.56093	64.55	64.393	64.954	0					13	10	2	0	0	0	0.63811	1	23336	23336		12.532	0	1	649900			35379	6920	25949	26124	34404	34404					-0.10077231188483893
LYEEARYYQLQ	11	Unmodified	_LYEEARYYQLQ_					0	0	0		nc|ENSG00000153885|Q96SI1-2|KCTD15;ENSG00000153885|ENST00000683859|KCTD15	nc|ENSG00000153885|Q96SI1-2|KCTD15	nc|ENSG00000153885|Q96SI1-2|KCTD15	MSMS	A375_MHC_IP_R1	1	492.63751220703125	3	492.577025	1474.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.623	1	40.623	40.123	41.123	0								0	0	0	0.16258	1	13972	13972		2.4348	0	1				35380	6045	25950	26125	34405	34405					-0.009121959274807523
LYEESPFGW	9	Unmodified	_LYEESPFGW_					0	0	0			REV__ENSG00000107798|ENST00000336233|LIPA	REV__ENSG00000107798|ENST00000336233|LIPA	MULTI-SECPEP	A375_MHC_IP_R1	1	563.6834106445312	2	564.25584	1126.49713	-0.76063	-0.00042919	-0.031582	-1.782E-05	-0.79221	-0.00044701	564.7561588207645	67.507	1.1667	67.507	67.297	68.463	0					35	22	3	0	0	0	0.74651	1	24608	24608		8.5933	4.264	1	1517100	+		35381	17497	25951	26126	34406	34406					-0.06106242547616603
LYEILWSF	8	Unmodified	_LYEILWSF_					0	0	0			REV__ENST00000282003.6_1_13:79188644-79188734:-|nuORF	REV__ENST00000282003.6_1_13:79188644-79188734:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	535.1574096679688	2	535.781493	1069.54843	-0.57815	-0.00030976	-4.2948	-0.0023011	-4.873	-0.0026109	536.2808437791421	43.376	0.20223	43.376	43.249	43.451	0					5	3	2	0	0	0	0.97144	1	15038	15038		5.2307	0.90143	1	788340	+		35382	23322	25952	26127	34407	34407					0.016441262170928894
LYEIPDVPR	9	Unmodified	_LYEIPDVPR_					0	0	0			REV__ENSG00000170788|ENST00000372202|DYDC1	REV__ENSG00000170788|ENST00000372202|DYDC1	MULTI-SECPEP	A375_MHC_IP_R2	2	550.7444458007812	2	551.300581	1100.58661	-1.0877	-0.00059965	-0.65959	-0.00036363	-1.7473	-0.00096329	551.3002471620423	61.731	0.30303	62.475	62.371	62.674	0.74368					10	5	2	0	0	0	0.76642	1	23369	23369		18.146	1.0335	1	2959200	+		35383	21018	25953	26128	34408	34408					0.04034012131751297
LYELARIRS	9	Unmodified	_LYELARIRS_					0	0	0			REV__ENST00000275364.7_1_7:2770568-2770751:-|nuORF	REV__ENST00000275364.7_1_7:2770568-2770751:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	375.25286865234375	3	374.220624	1119.64004	0.32295	0.00012085	0.22235	8.3208E-05	0.5453	0.00020406	374.22069521122665	43.829	0.96899	43.829	43.502	44.471	0					55	18	5	0	0	0	0.51106	1	15334	15334		13.615	0.74226	1	81136000	+		35384	23298	25954	26129	34409	34409					0.08500809634256257
LYELARIRS	9	Unmodified	_LYELARIRS_					0	0	0			REV__ENST00000275364.7_1_7:2770568-2770751:-|nuORF	REV__ENST00000275364.7_1_7:2770568-2770751:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	375.2526550292969	3	374.220624	1119.64004	0.44538	0.00016667	-0.27731	-0.00010378	0.16806	6.2893E-05	374.22051693466034	42.977	1.1622	43.749	43.472	44.634	0.7724					57	22	5	0	0	0	0.38603	1	16066	16066		18.373	0.93045	1	82356000	+		35385	23298	25954	26129	34410	34410					0.08500809634256257
LYELLPESPF	10	Unmodified	_LYELLPESPF_					0	0	0		ENST00000575531.5_1_16:4407102-4412712:-|nuORF;ENST00000575714.5_1_16:4408319-4455566:-|nuORF;nc|ENSG00000262246|P57737-2|CORO7;nc|ENSG00000262246|P57737-4|CORO7;ENSG00000262246|ENST00000251166|CORO7;nc|ENSG00000262246|P57737-3|CORO7;ENST00000572125.1_1_16:4409158-4409606:-|nuORF	ENST00000575531.5_1_16:4407102-4412712:-|nuORF	ENST00000575531.5_1_16:4407102-4412712:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	403.9508361816406	3	403.213024	1206.61724	-0.57453	-0.00023166	3.813	0.0015374	3.2384	0.0013058	403.2141331503034	19.327	0.50369	19.327	19.221	19.725	0					16	11	2	0	0	0	0.87163	1	4840	4840		16.566	5.0712	1	17221000			35386	9944	25955	26130	34411	34411					0.02219745726142719
LYEMCCMNH	9	Unmodified	_LYEMCCMNH_					0	0	0		nc|ENSG00000114670|Q8NG66-4|NEK11;ENSG00000114670|ENST00000383366|NEK11;nc|ENSG00000114670|Q8NG66-2|NEK11;nc|ENSG00000114670|Q8NG66-3|NEK11	nc|ENSG00000114670|Q8NG66-4|NEK11	nc|ENSG00000114670|Q8NG66-4|NEK11	MSMS	A375_MHC_IP_R2	2	572.21142578125	2	572.20814	1142.40173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.21	1	103.97	103.47	104.47	0.76428								0	0	0	0.15486	1	39089	39089		4.756	1.1595	1				35387	3237	25956	26131	34412	34412					-0.16377701597821215
LYETWNKTF	9	Unmodified	_LYETWNKTF_					0	0	0		NLRP1|p.R726W|1|0.2|ENSG00000091592|chr17:5558520-5558520|G/A|missense_variant	NLRP1|p.R726W|1|0.2|ENSG00000091592|chr17:5558520-5558520|G/A|missense_variant	NLRP1|p.R726W|1|0.2|ENSG00000091592|chr17:5558520-5558520|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	601.6798706054688	2	601.298039	1200.58152	-0.44314	-0.00026646	-1.8844	-0.0011331	-2.3275	-0.0013995	601.7998299501967	80.095	0.35928	80.095	79.879	80.238	0					13	6	3	0	0	0	0.73363	1	29270	29270		3.5965	0	1	2558200			35388	15001	25957	26132	34413	34413					-0.010742917308789401
LYEVKAMMA	9	Unmodified	_LYEVKAMMA_					0	0	0			REV__PSMD6|p.A108V|1|0.36|ENSG00000163636|chr3:64022346-64022346|G/A|missense_variant	REV__PSMD6|p.A108V|1|0.36|ENSG00000163636|chr3:64022346-64022346|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	528.1869506835938	2	528.266838	1054.51912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.444	1	51.198	50.698	51.698	0.75406								0	0	0	0.15486	1	18971	18971		12.532	0.89125	1		+		35389	27851	25958	26133	34414	34414					-0.005954773950406889
LYEWVLQW	8	Unmodified	_LYEWVLQW_					0	0	0		ENSG00000128829|ENST00000263791|EIF2AK4;nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;nc|ENSG00000128829|Q9P2K8-3|EIF2AK4	ENSG00000128829|ENST00000263791|EIF2AK4	ENSG00000128829|ENST00000263791|EIF2AK4	MULTI-SECPEP	A375_MHC_IP_R1	1	378.98529052734375	3	379.530687	1135.57023	0.84647	0.00032126	2.7971	0.0010616	3.6436	0.0013828	379.86680405184427	44.721	0.3046	44.721	44.523	44.827	0					7	5	2	0	0	0	0.96296	1	15622	15622		7.2892	4.4459	1	1344900			35390	4165	25959	26134	34415	34415					0.007869309656598489
LYFNEVDYCEH	11	Unmodified	_LYFNEVDYCEH_					0	0	0			REV__ZNF836|p.G392Efs*43|1|0.12|ENSG00000196267|chr19:52156508-52156508|C/-|frameshift_variant	REV__ZNF836|p.G392Efs*43|1|0.12|ENSG00000196267|chr19:52156508-52156508|C/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	716.430419921875	2	716.29791	1430.58127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.028	1	94.773	94.273	95.273	0.74474								0	0	0	0.1629	1	35739	35739		3.5965	0.31518	1		+		35391	22177	25960	26135	34416	34416					-0.11680079512984776
LYFSLELPLL	10	Unmodified	_LYFSLELPLL_					0	0	0			REV__nc|ENSG00000119402|Q9UKT8-2|FBXW2	REV__nc|ENSG00000119402|Q9UKT8-2|FBXW2	MULTI-MSMS	A375_MHC_IP_R2	2	1207.697265625	1	1207.69729	1206.69001	0.20587	0.00024863	3.8789	0.0046845	4.0847	0.0049331	1207.701144795467	123.23	0.5069	123.61	123.23	123.73	0.3766					10	9	2	0	0	0	0.71118	1	47312	47312		7.2892	1.0834	1	20714000	+		35392	18071	25961	26136	34417	34417					0.09493499519567195
LYFWHALE	8	Unmodified	_LYFWHALE_					0	0	0			REV__nc|ENSG00000172795|Q8IU60-2|DCP2	REV__nc|ENSG00000172795|Q8IU60-2|DCP2	MULTI-SECPEP	A375_MHC_IP_R1	1	1079.1475830078125	1	1078.53564	1077.52837	-0.075866	-8.1825E-05	-2.0465	-0.0022072	-2.1224	-0.0022891	1078.5340875184459	120.23	0.25204	120.23	120.05	120.3	0					7	4	2	0	0	0	0.96296	1	44494	44494		15.768	5.6943	1	18016000	+		35393	21172	25962	26137	34418	34418					-0.0072962472286235425
LYFYPKYKNLF	11	Unmodified	_LYFYPKYKNLF_					0	0	0		ENST00000488374.5_1_3:167517863-167543108:+|nuORF	ENST00000488374.5_1_3:167517863-167543108:+|nuORF	ENST00000488374.5_1_3:167517863-167543108:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	500.0042724609375	3	499.270984	1494.79112	-0.59829	-0.00029871	3.1765	0.0015859	2.5782	0.0012872	499.2747849007803	62.584	1.7763	63.326	62.824	64.6	0.74263					62	34	4	0	0	0	0.73228	2	23674	23674;23738		5.4027	3.9476	1	13242000			35394	12614	25963	26138	34419;34420	34419					0.06351951222268326
LYGARVEPTL	10	Unmodified	_LYGARVEPTL_					0	0	0			REV__nc|ENSG00000005844|P20701-3|ITGAL	REV__nc|ENSG00000005844|P20701-3|ITGAL	MULTI-SECPEP	A375_MHC_IP_R2	2	559.1519775390625	2	559.813856	1117.61316	-0.66205	-0.00037062	-4.2291	-0.0023675	-4.8911	-0.0027381	560.3108927958144	105.82	0.25662	106.58	106.37	106.63	0.75977					5	4	2	0	0	0	0.92514	1	39976	39976		8.1555	5.8528	1	684250	+		35395	16126	25964	26139	34421	34421					0.05905701023107213
LYGHFLSG	8	Unmodified	_LYGHFLSG_					0	0	0			REV__tr|U7SEM2|U7SEM2_FUSNUCRISPR-associatedendoribonucleasecas6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02350PE=4SV=1	REV__tr|U7SEM2|U7SEM2_FUSNUCRISPR-associatedendoribonucleasecas6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02350PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	893.5428466796875	1	893.451579	892.444303	-0.4138	-0.00036971	-3.8163	-0.0034097	-4.2301	-0.0037794	893.4479610091188	119.98	0.50964	120.51	120.09	120.6	0.5321					11	9	2	0	0	0	0.7758	1	45563	45563		10.183	0	1	7500800	+		35396	28161	25965	26140	34422	34422					-0.006221558197694321
LYGLNLTSL	9	Unmodified	_LYGLNLTSL_					0	0	0		ENSG00000174482|ENST00000698399|LINGO2;nc|ENSG00000169783|Q96FE5-2|LINGO1;ENSG00000169783|ENST00000355300|LINGO1	ENSG00000174482|ENST00000698399|LINGO2	ENSG00000174482|ENST00000698399|LINGO2	MULTI-SECPEP	A375_MHC_IP_R1	1	497.68426513671875	2	497.2844	992.554247	-0.34694	-0.00017253	0.2574	0.000128	-0.089548	-4.4531E-05	497.2843970646525	103.28	0.56032	103.28	103.06	103.63	0					15	10	2	0	0	0	0.46045	1	37971	37971		36.127	15.673	1	1115700			35397	7885	25966	26141	34423	34423					0.05767224728754172
LYGNVEKV	8	Unmodified	_LYGNVEKV_					0	0	0		ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000595164.5_1_19:39327364-39331218:-|nuORF;ENST00000597731.1_1_19:39327364-39331218:-|nuORF;ENST00000601664.1_1_19:39329532-39330816:-|nuORF	ENSG00000104824|ENST00000221419|HNRNPL	ENSG00000104824|ENST00000221419|HNRNPL	MULTI-SECPEP	A375_MHC_IP_R2	2	461.65618896484375	2	461.255643	920.496732	-0.97522	-0.00044983	1.013	0.00046724	0.037755	1.7415E-05	461.2562716356492	33.882	0.60732	34.634	34.146	34.753	0.75225					19	11	3	0	0	0	0.37815	1	12177	12177		53.833	9.9745	1	3694700			35398	2539	25967	26142	34424	34424					0.03330382523188291
LYGVTPLLTW	10	Unmodified	_LYGVTPLLTW_					0	0	0			REV__ENST00000335798.8_2_3:23244714-23574076:+|nuORF	REV__ENST00000335798.8_2_3:23244714-23574076:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	582.229736328125	2	581.828975	1161.6434	0.03748	2.1807E-05	0.83886	0.00048807	0.87634	0.00050988	581.829071871909	108.32	1.0637	108.32	107.9	108.97	0					28	20	2	0	0	0	0.88918	1	39717	39717		18.146	3.5647	1	1453400	+		35399	23674	25968	26143	34425	34425					0.0690405968828145
LYHIISSNL	9	Unmodified	_LYHIISSNL_					0	0	0		ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENSG00000100911|ENST00000216802|PSME2;ENST00000559042.1_1_14:24612620-24612713:-|nuORF;ENST00000559005.2_1_14:24612620-24612898:-|nuORF	ENST00000442824.1_1_5:97549420-97549822:+|nuORF	ENST00000442824.1_1_5:97549420-97549822:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	530.6957397460938	2	530.295299	1058.57605	-0.35266	-0.00018701	0.27555	0.00014612	-0.07711	-4.0891E-05	530.2955354620788	72.007	0.5565	72.007	71.765	72.321	0					17	10	2	0	0	0	0.14572	1	26205	26205		70.716	20.783	1	3217400			35400	2230	25969	26144	34426	34426					0.049100294773325004
LYHIISSNL	9	Unmodified	_LYHIISSNL_					0	0	0		ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENSG00000100911|ENST00000216802|PSME2;ENST00000559042.1_1_14:24612620-24612713:-|nuORF;ENST00000559005.2_1_14:24612620-24612898:-|nuORF	ENST00000442824.1_1_5:97549420-97549822:+|nuORF	ENST00000442824.1_1_5:97549420-97549822:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	530.6945190429688	2	530.295299	1058.57605	-0.78019	-0.00041373	0.21141	0.00011211	-0.56878	-0.00030162	530.2956013487303	71.087	0.91119	71.821	71.656	72.567	0.73421					19	17	2	0	0	0	0.03497	1	26999	26999		70.716	2.6348	1	3352100			35401	2230	25969	26144	34427	34427					0.049100294773325004
LYIILLLVTAW	11	Unmodified	_LYIILLLVTAW_					0	0	0			REV__ENSG00000175077|ENST00000312295|RTP1	REV__ENSG00000175077|ENST00000312295|RTP1	MSMS	A375_MHC_IP_R1	1	659.4212036132812	2	659.412675	1316.8108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.111	1	78.111	77.611	78.611	0								0	0	0	0.16331	1	28511	28511		1.4819	0.15237	1		+		35402	21323	25970	26145	34428	34428					0.16506327233059892
LYILIMRKNK	10	Unmodified	_LYILIMRKNK_					0	0	0			REV__nc|ENSG00000126226|Q5JVF3-3|PCID2	REV__nc|ENSG00000126226|Q5JVF3-3|PCID2	MSMS	A375_MHC_IP_R2	2	646.5863647460938	2	646.399576	1290.7846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.5	1	119.11	118.61	119.61	0.60909								0	0	0	0.15417	1	44989	44989		7.2892	2.96	1		+		35403	18381	25971	26146	34429	34429					0.15083734789891423
LYIVLPALV	9	Unmodified	_LYIVLPALV_					0	0	0			REV__ENSG00000177283|ENST00000374694|FZD8	REV__ENSG00000177283|ENST00000374694|FZD8	MULTI-SECPEP	A375_MHC_IP_R2	2	1000.9842529296875	1	1000.64413	999.636855	0.11753	0.0001176	-0.18302	-0.00018313	-0.065489	-6.5532E-05	1000.6441693138897	134.48	0.20238	134.62	134.49	134.7	0.13901					6	3	2	0	0	0	0.81122	1	52855	52855		2.3027	0	1	6173800	+		35404	21449	25972	26147	34430	34430					0.13702166527548343
LYIVLPALV	9	Unmodified	_LYIVLPALV_					0	0	0			REV__ENSG00000177283|ENST00000374694|FZD8	REV__ENSG00000177283|ENST00000374694|FZD8	MULTI-MATCH	A375_MHC_IP_R1	1		1	1000.64413	999.636855	-0.069694	-6.9739E-05	-0.77389	-0.00077438	-0.84358	-0.00084412	1000.6428457723625	134.65	0.30338	134.65	134.42	134.73	0	0.014046	-0.00028613	NaN	2.3027	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7877200	+		35405	21449	25972	26147							0.13702166527548343
LYKAFKMQI	9	Unmodified	_LYKAFKMQI_					0	0	0			REV__tr|U7SZM4|U7SZM4_FUSNUMetal-dependentcarboxypeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00798PE=3SV=1	REV__tr|U7SZM4|U7SZM4_FUSNUMetal-dependentcarboxypeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00798PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	571.7363891601562	2	571.325545	1140.63654	-0.16539	-9.4492E-05	-2.3359	-0.0013346	-2.5013	-0.0014291	571.3239463765959	71.098	0.41115	71.098	70.8	71.211	0					15	7	3	0	0	0	0.65246	1	25827	25827		21.747	1.293	1	1630200	+		35406	28653	25973	26148	34431	34431					0.0718442353604587
LYKCFRNKF	9	Unmodified	_LYKCFRNKF_					0	0	0			REV__ENST00000334512.9_1_10:81074272-81074494:+|nuORF	REV__ENST00000334512.9_1_10:81074272-81074494:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	406.9522399902344	3	406.886588	1217.63793	-0.1271	-5.1716E-05	0.42458	0.00017276	0.29748	0.00012104	406.88687951690974	35.868	0.30558	35.868	35.727	36.033	0					7	5	2	0	0	0	0.71416	1	11985	11985		5.7319	5.7319	1	3031700	+		35407	23659	25974	26149	34432	34432					0.03782057624812296
LYKDKREI	8	Unmodified	_LYKDKREI_					0	0	0		nc|ENSG00000139926|Q96NE9-2|FRMD6;ENSG00000139926|ENST00000344768|FRMD6	nc|ENSG00000139926|Q96NE9-2|FRMD6	nc|ENSG00000139926|Q96NE9-2|FRMD6	MULTI-SECPEP	A375_MHC_IP_R2	2	533.2074584960938	2	532.808574	1063.60259	-1.5168	-0.00080817	0.16477	8.7792E-05	-1.352	-0.00072037	532.8085658834583	29.02	0.24593	29.719	29.584	29.83	0.69872					6	4	2	0	0	0	0.972	1	10107	10107		13.906	1.3745	1	4394500			35408	5117	25975	26150	34433	34433					0.07333718368658992
LYKFRHSPN	9	Unmodified	_LYKFRHSPN_					0	0	0		ENSG00000113048|ENST00000261413|MRPS27	ENSG00000113048|ENST00000261413|MRPS27	ENSG00000113048|ENST00000261413|MRPS27	MULTI-SECPEP	A375_MHC_IP_R1	1	388.2769470214844	3	387.876969	1160.60908	0.3323	0.00012889	0.061535	2.3868E-05	0.39384	0.00015276	387.87692135597007	20.5	0.56116	20.5	20.232	20.793	0					25	10	3	0	0	0	0.75519	1	5267	5267		10.151	10.151	1	3431500			35409	3123	25976	26151	34434	34434					0.03519656320031572
LYKILIYLI	9	Unmodified	_LYKILIYLI_					0	0	0		tr|U7T3B9|U7T3B9_FUSNUCompetenceproteinComECOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00372PE=4SV=1	tr|U7T3B9|U7T3B9_FUSNUCompetenceproteinComECOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00372PE=4SV=1	tr|U7T3B9|U7T3B9_FUSNUCompetenceproteinComECOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00372PE=4SV=1	MSMS	A375_MHC_IP_R1	1	576.3733520507812	2	576.375561	1150.73657	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.331	1	83.331	82.831	83.831	0								0	0	0	0.15486	1	30492	30492		2.3027	0	1				35410	29961	25977	26152	34435	34435					0.16722984141506458
LYKKKKKIK	9	Unmodified	_LYKKKKKIK_					0	0	0			REV__ENST00000376510.7_1_10:23409918-23410092:+|nuORF	REV__ENST00000376510.7_1_10:23409918-23410092:+|nuORF	MSMS	A375_MHC_IP_R2	2	588.9036865234375	2	588.913176	1175.8118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.294	1	75.031	74.531	75.531	0.73752								0	0	0	0.15486	1	28202	28202		0.6015	0.14316	1		+		35411	24145	25978	26153	34436	34436					0.2309258639259042
LYKKRPVKIEK	11	Unmodified	_LYKKRPVKIEK_					0	0	0		ENSG00000112276|ENST00000314641|BVES	ENSG00000112276|ENST00000314641|BVES	ENSG00000112276|ENST00000314641|BVES	MSMS	A375_MHC_IP_R1	1	701.6559448242188	2	701.450654	1400.88676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.4	1	119.4	118.9	119.9	0								0	0	0	0.16331	1	44126	44126		1.4819	0	1				35412	3065	25979	26154	34437	34437					0.20234724133138116
LYKLLKLLKRK	11	Unmodified	_LYKLLKLLKRK_					0	0	0			REV__ENST00000545279.5_1_5:135468581-135489282:+|nuORF	REV__ENST00000545279.5_1_5:135468581-135489282:+|nuORF	MSMS	A375_MHC_IP_R1	1	708.4531860351562	2	708.494865	1414.97518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.31	1	128.31	127.81	128.81	0								0	0	0	0.1636	1	49262	49262		0	0	1		+		35413	25993	25980	26155	34438	34438					0.2842876444360627
LYKNEEVVL	9	Unmodified	_LYKNEEVVL_					0	0	0		nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-2|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A;ENSG00000082269|ENST00000418814|FAM135A;ENST00000393299.6_1_6:71138108-71233862:+|nuORF	nc|ENSG00000082269|Q9P2D6-3|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	MULTI-MSMS	A375_MHC_IP_R1	1	369.94110107421875	3	369.541252	1105.60193	-0.010011	-3.6994E-06	-0.074181	-2.7413E-05	-0.084192	-3.1112E-05	369.54126375785717	26.043	2.1726	26.043	25.664	27.836	0					125	42	6	0	0	0	0.6343	1	7930	7930		12.873	2.0731	1	978980000			35414	1756	25981	26156	34439	34439					0.05334878928965736
LYKNNESYF	9	Unmodified	_LYKNNESYF_					0	0	0			REV__tr|U7T4Z9|U7T4Z9_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00618PE=4SV=1	REV__tr|U7T4Z9|U7T4Z9_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00618PE=4SV=1	MSMS	A375_MHC_IP_R2	2	589.3616333007812	2	589.279846	1176.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.77	1	89.502	89.002	90.002	0.7318								0	0	0	0.15486	1	33783	33783		9.3474	0.75416	1		+		35415	28811	25982	26157	34440	34440					-0.03607168627581814
LYKNNPKLL	9	Unmodified	_LYKNNPKLL_					0	0	0		ENSG00000112855|ENST00000230771|HARS2;nc|ENSG00000112855|P49590-2|HARS2	ENSG00000112855|ENST00000230771|HARS2	ENSG00000112855|ENST00000230771|HARS2	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1981201171875	2	551.834591	1101.65463	-0.69925	-0.00038587	0.25166	0.00013888	-0.44759	-0.000247	551.8346422500545	87.779	0.406	88.511	88.316	88.722	0.7318					11	7	2	0	0	0	0.69504	1	33407	33407		18.135	18.135	1	2031600			35416	3115	25983	26158	34441	34441					0.10786881782428281
LYKPRRRD	8	Unmodified	_LYKPRRRD_					0	0	0		ENST00000564704.5_1_16:67289660-67296168:+|nuORF	ENST00000564704.5_1_16:67289660-67296168:+|nuORF	ENST00000564704.5_1_16:67289660-67296168:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1104.73046875	1	1103.64324	1102.63596	-0.20809	-0.00022966	0.60692	0.00066982	0.39883	0.00044017	1104.6446170205522	120.93	0.15249	120.93	120.85	121.01	0					4	2	2	0	0	0	0.77781	1	44820	44820		2.8892	0	1	37181000			35417	13540	25984	26159	34442	34442					0.08874764931215395
LYLAVLSH	8	Unmodified	_LYLAVLSH_					0	0	0			REV__ENSG00000186105|ENST00000334994|LRRC70	REV__ENSG00000186105|ENST00000334994|LRRC70	MULTI-SECPEP	A375_MHC_IP_R1	1	916.2412109375	1	915.52983	914.522553	0.043049	3.9412E-05	2.9628	0.0027125	3.0058	0.0027519	915.5316103689943	117.82	0.50787	117.82	117.51	118.02	0					16	9	2	0	0	0	0.96296	1	43209	43209		15.768	9.4141	1	7455300	+		35418	21947	25985	26160	34443	34443					0.06187276765479055
LYLCCDSI	8	Unmodified	_LYLCCDSI_					0	0	0			REV__tr|U7SVD5|U7SVD5_FUSNUSeleniummetabolismproteinYedFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01222PE=4SV=1	REV__tr|U7SVD5|U7SVD5_FUSNUSeleniummetabolismproteinYedFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01222PE=4SV=1	MSMS	A375_MHC_IP_R2	2	465.1839294433594	2	465.208989	928.403426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.725	1	58.474	57.974	58.974	0.74894								0	0	0	0.16876	1	21829	21829		15.768	4.6538	1		+		35419	28590	25986	26161	34444	34444					-0.06364001245901818
LYLCFVQGF	9	Unmodified	_LYLCFVQGF_					0	0	0			REV__ENSG00000266714|ENST00000645453|MYO15B	REV__ENSG00000266714|ENST00000645453|MYO15B	MULTI-SECPEP	A375_MHC_IP_R2	2	1088.753173828125	1	1089.54377	1088.53649	0.16119	0.00017562	-0.28336	-0.00030873	-0.12216	-0.0001331	1090.5449149286792	119.18	0.56021	119.71	119.38	119.94	0.5321					13	10	2	0	0	0	0.75466	1	45440	45440		12.532	2.3482	1	24707000	+		35420	22927	25987	26162	34445	34445					-0.004238137977381484
LYLCLRGCP	9	Unmodified	_LYLCLRGCP_					0	0	0		nc|ENSG00000182175|Q96B86-3|RGMA;ENSG00000182175|ENST00000329082|RGMA;nc|ENSG00000182175|Q96B86-4|RGMA	nc|ENSG00000182175|Q96B86-3|RGMA	nc|ENSG00000182175|Q96B86-3|RGMA	MULTI-SECPEP	A375_MHC_IP_R1	1	1037.38671875	1	1037.52707	1036.51979	0.38738	0.00040192	-0.35548	-0.00036882	0.031897	3.3094E-05	1037.5262921027654	109.27	0.25429	109.27	109.17	109.42	0					5	4	2	0	0	0	0.77244	1	40100	40100		9.3474	0.75416	1	1700300			35421	8383	25988	26163	34446	34446					0.0029936204466594063
LYLCLRGCP	9	Unmodified	_LYLCLRGCP_					0	0	0		nc|ENSG00000182175|Q96B86-3|RGMA;ENSG00000182175|ENST00000329082|RGMA;nc|ENSG00000182175|Q96B86-4|RGMA	nc|ENSG00000182175|Q96B86-3|RGMA	nc|ENSG00000182175|Q96B86-3|RGMA	MULTI-MATCH	A375_MHC_IP_R2	2		1	1037.52707	1036.51979	0.075163	7.7984E-05	1.0232	0.0010616	1.0984	0.0011396	1037.5276189909473	108.59	0.30549	109.34	109.06	109.37	0.74684	0.034357	0.00017322	NaN	9.3474	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1163700			35422	8383	25988	26163							0.0029936204466594063
LYLEMAELQTQ	11	Unmodified	_LYLEMAELQTQ_					0	0	0			REV__ENST00000479375.6_1_9:130556974-130569527:+|nuORF	REV__ENST00000479375.6_1_9:130556974-130569527:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1338.7269287109375	1	1338.66098	1337.6537	-0.10084	-0.000135	3.1316	0.0041922	3.0308	0.0040572	1338.6687971215526	119.6	0.45747	119.6	119.18	119.64	0					10	8	2	0	0	0	0.73016	1	44169	44169		8.7454	0.58988	1	20387000	+		35423	18967	25989	26164	34447	34447					-0.0016174543948181963
LYLETSNK	8	Unmodified	_LYLETSNK_					0	0	0		ENST00000337179.9_1_12:93795963-93796278:+|nuORF	ENST00000337179.9_1_12:93795963-93796278:+|nuORF	ENST00000337179.9_1_12:93795963-93796278:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	483.7157287597656	2	484.258382	966.502212	-0.6352	-0.0003076	0.051074	2.4733E-05	-0.58413	-0.00028287	484.2582963374468	30.175	0.30183	30.175	30.049	30.351	0					7	5	2	0	0	0	0.8957	1	9587	9587		28.487	0	1	2732800			35424	10825	25990	26165	34448	34448					0.017620613149915698
LYLEWVYMF	9	Unmodified	_LYLEWVYMF_					0	0	0		ENST00000514931.5_1_5:34757716-34757935:+|nuORF	ENST00000514931.5_1_5:34757716-34757935:+|nuORF	ENST00000514931.5_1_5:34757716-34757935:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	631.7535400390625	2	632.309561	1262.60457	-0.60588	-0.00038311	3.036	0.0019197	2.4301	0.0015366	632.3124606632935	103.19	0.2542	103.19	103.06	103.32	0					5	4	2	0	0	0	0.77834	1	37944	37944		8.5933	5.598	1	523670			35425	12943	25991	26166	34449	34449					-0.016229889377655127
LYLFILIA	8	Unmodified	_LYLFILIA_					0	0	0			REV__tr|U7T138|U7T138_FUSNUP-typeconjugativetransferproteinTrbLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00885PE=4SV=1	REV__tr|U7T138|U7T138_FUSNUP-typeconjugativetransferproteinTrbLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00885PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	483.2056579589844	2	483.307147	964.599741	-0.39395	-0.0001904	1.1451	0.00055346	0.75119	0.00036306	483.3074704984235	143.89	0.24954	143.92	143.74	143.99	0.024414					7	4	3	0	0	0	0.972	1	56240	56240		0.79363	0	1	809070	+		35426	28693	25992	26167	34450	34450					0.11602494981809741
LYLFRKDAI	9	Unmodified	_LYLFRKDAI_					0	0	0			REV__ENSG00000177807|ENST00000644903|KCNJ10	REV__ENSG00000177807|ENST00000644903|KCNJ10	MULTI-SECPEP	A375_MHC_IP_R1	1	379.89068603515625	3	380.225486	1137.65463	0.1726	6.5627E-05	-0.14505	-5.5151E-05	0.027553	1.0476E-05	380.2254715047845	86.675	0.4547	86.675	86.376	86.831	0					11	8	2	0	0	0	0.79683	1	31696	31696		1.1933	0.41681	1	969680	+		35427	21472	25993	26168	34451	34451					0.09130881782425604
LYLFRKDAI	9	Unmodified	_LYLFRKDAI_					0	0	0			REV__ENSG00000177807|ENST00000644903|KCNJ10	REV__ENSG00000177807|ENST00000644903|KCNJ10	MULTI-MATCH	A375_MHC_IP_R2	2		3	380.225486	1137.65463	0.19118	7.2692E-05	-0.11586	-4.4052E-05	0.075324	2.864E-05	380.55971740593185	85.651	0.35601	86.387	86.085	86.441	0.73601	-0.144	1.58E-05	NaN	1.1933	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	920010	+		35428	21472	25993	26168							0.09130881782425604
LYLIEKLPW	9	Unmodified	_LYLIEKLPW_					0	0	0		ENST00000442394.5_1_7:142965976-142966441:+|nuORF	ENST00000442394.5_1_7:142965976-142966441:+|nuORF	ENST00000442394.5_1_7:142965976-142966441:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1174.2872314453125	1	1174.68706	1173.67978	0.26908	0.00031609	0.37169	0.00043662	0.64078	0.00075271	1175.6913488119326	134.33	0.20496	134.47	134.34	134.55	0.13901					5	3	2	0	0	0	0.79683	1	52840	52840		5.2307	0	1	1632500			35429	11992	25994	26169	34452	34452					0.09988936584977637
LYLIICHWL	9	Unmodified	_LYLIICHWL_					0	0	0			REV__ENST00000415076.6_1_7:43648087-43648366:-|nuORF	REV__ENST00000415076.6_1_7:43648087-43648366:-|nuORF	MSMS	A375_MHC_IP_R2	2	587.5010375976562	2	587.328088	1172.64162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.568	1	80.313	79.813	80.813	0.74474								0	0	0	0.15427	1	30196	30196		14.582	0	1		+		35430	24513	25995	26170	34453	34453					0.0622072739865871
LYLKNEFPV	9	Unmodified	_LYLKNEFPV_					0	0	0			REV__ENSG00000213160|ENST00000392647|KLHL23	REV__ENSG00000213160|ENST00000392647|KLHL23	MULTI-SECPEP	A375_MHC_IP_R1	1	374.6204833984375	3	374.877975	1121.6121	0.33228	0.00012456	-2.8982	-0.0010865	-2.5659	-0.0009619	374.87705244832074	43.778	0.25455	43.778	43.655	43.909	0					6	4	2	0	0	0	0.73363	1	15214	15214		7.1017	2.0542	1	523500	+		35431	22616	25996	26171	34454	34454					0.05615486654187407
LYLKTDNYI	9	Unmodified	_LYLKTDNYI_					0	0	0		nc|ENSG00000116748|P23109-2|AMPD1;ENSG00000116748|ENST00000520113|AMPD1	nc|ENSG00000116748|P23109-2|AMPD1	nc|ENSG00000116748|P23109-2|AMPD1	MULTI-SECPEP	A375_MHC_IP_R2	2	571.1304321289062	2	571.808239	1141.60193	-0.20951	-0.0001198	-0.84007	-0.00048036	-1.0496	-0.00060016	572.3077133236152	88.177	1.0138	88.909	88.57	89.584	0.7318					24	19	2	0	0	0	0.77244	1	33700	33700		9.3474	0	1	3257800			35432	3427	25997	26172	34455	34455					0.03678878928940321
LYLLGYKLY	9	Unmodified	_LYLLGYKLY_					0	0	0		tr|U7SW05|U7SW05_FUSNULipopolysaccharideexportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01409PE=4SV=1	tr|U7SW05|U7SW05_FUSNULipopolysaccharideexportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01409PE=4SV=1	tr|U7SW05|U7SW05_FUSNULipopolysaccharideexportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01409PE=4SV=1	MSMS	A375_MHC_IP_R2	2	573.3712768554688	2	573.333893	1144.65323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.23	1	61.975	61.475	62.475	0.74503								0	0	0	0.15486	1	23203	23203		8.5933	0.68312	1				35433	29801	25998	26173	34456	34456					0.08669247693683246
LYLLILIPV	9	Unmodified	_LYLLILIPV_					0	0	0			REV__ENST00000590651.1_1_19:32949377-32959920:+|nuORF	REV__ENST00000590651.1_1_19:32949377-32959920:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1056.8126220703125	1	1056.70673	1055.69945	-0.36176	-0.00038227	3.7411	0.0039533	3.3794	0.003571	1056.7102485083292	122.45	0.15144	122.45	122.33	122.48	0					4	2	2	0	0	0	0.74477	1	45559	45559		5.2307	4.0373	1	41120000	+		35434	21523	25999	26174	34457	34457					0.17383312595734424
LYLMEQPNKS	10	Unmodified	_LYLMEQPNKS_					0	0	0			REV__MDN1|p.H4158Y|1|0.25|ENSG00000112159|chr6:89677637-89677637|G/A|missense_variant	REV__MDN1|p.H4158Y|1|0.25|ENSG00000112159|chr6:89677637-89677637|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	408.1617431640625	3	408.209396	1221.60636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.14	1	143.14	142.64	143.64	0								0	0	0	0.15531	1	54917	54917		1.7423	1.0446	1		+		35435	27001	26000	26175	34458	34458					0.004420200801860119
LYLNNNAI	8	Unmodified	_LYLNNNAI_					0	0	0		ENSG00000205858|ENST00000401542|LRRC72	ENSG00000205858|ENST00000401542|LRRC72	ENSG00000205858|ENST00000401542|LRRC72	MSMS	A375_MHC_IP_R2	2	467.6974182128906	2	467.753267	933.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.272	1	51.026	50.526	51.526	0.75406								0	0	0	0.16876	1	18906	18906		30.225	5.5509	1				35436	9531	26001	26176	34459	34459					0.022574983804247495
LYLPMAQSV	9	Unmodified	_LYLPMAQSV_					0	0	0		nc|ENSG00000183283|Q15038-2|DAZAP2;ENSG00000183283|ENST00000412716|DAZAP2;nc|ENSG00000183283|Q15038-5|DAZAP2	nc|ENSG00000183283|Q15038-2|DAZAP2	nc|ENSG00000183283|Q15038-2|DAZAP2	MULTI-MSMS	A375_MHC_IP_R1	1	511.6723937988281	2	511.272978	1020.5314	-0.25258	-0.00012914	0.12545	6.4139E-05	-0.12714	-6.5001E-05	511.2731541208719	109.6	0.40855	109.6	109.42	109.83	0					14	7	3	0	0	0	0.022213	1	40211	40211		81.613	45.569	1	1696100			35437	8480	26002	26177	34460	34460					0.021958823396403204
LYLPMAQSV	9	Unmodified	_LYLPMAQSV_					0	0	0		nc|ENSG00000183283|Q15038-2|DAZAP2;ENSG00000183283|ENST00000412716|DAZAP2;nc|ENSG00000183283|Q15038-5|DAZAP2	nc|ENSG00000183283|Q15038-2|DAZAP2	nc|ENSG00000183283|Q15038-2|DAZAP2	MULTI-MSMS	A375_MHC_IP_R2	2	511.673095703125	2	511.272978	1020.5314	-0.69452	-0.00035509	0.91884	0.00046978	0.22432	0.00011469	511.27369167659407	108.8	0.66323	109.54	109.37	110.03	0.74684					17	12	2	0	0	0	0.042197	2	41104	41084;41104		67.344	31.3	1	1467000			35438	8480	26002	26177	34461;34462	34462					0.021958823396403204
LYLQILLLL	9	Unmodified	_LYLQILLLL_					0	0	0		ENST00000436639.6_1_6:109322603-109322675:-|nuORF	ENST00000436639.6_1_6:109322603-109322675:-|nuORF	ENST00000436639.6_1_6:109322603-109322675:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1102.4921875	1	1101.7282	1100.72092	-0.062574	-6.894E-05	0.23999	0.00026441	0.17742	0.00019547	1101.7297747435023	119.95	0.25471	119.95	119.74	120	0					5	4	2	0	0	0	0.79683	1	44387	44387		5.2307	5.2307	1	7369200			35439	11929	26003	26178	34463	34463					0.17458697624465458
LYLREGETY	9	Unmodified	_LYLREGETY_					0	0	0			REV__nc|ENSG00000186635|Q96P48-2|ARAP1	REV__nc|ENSG00000186635|Q96P48-2|ARAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	572.190185546875	2	572.287671	1142.56079	-0.6166	-0.00035287	0.9189	0.00052588	0.3023	0.000173	572.7894545106343	59.925	0.85892	60.672	60.098	60.957	0.74714					26	16	2	0	0	0	0.62767	1	22497	22497		23.148	0	1	2366300	+		35440	21978	26004	26179	34464	34464					-0.004788821105194074
LYLREGETY	9	Unmodified	_LYLREGETY_					0	0	0			REV__nc|ENSG00000186635|Q96P48-2|ARAP1	REV__nc|ENSG00000186635|Q96P48-2|ARAP1	MULTI-MATCH	A375_MHC_IP_R1	1		2	572.287671	1142.56079	-0.27855	-0.00015941	0.25352	0.00014509	-0.025028	-1.4323E-05	572.2876644863481	60.755	0.50882	60.755	60.464	60.973	0	0.041744	-0.00024246	NaN	16.942	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2703200	+		35441	21978	26004	26179							-0.004788821105194074
LYLRPLQPN	9	Unmodified	_LYLRPLQPN_					0	0	0			REV__ENSG00000138246|ENST00000260818|DNAJC13	REV__ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	A375_MHC_IP_R2	2	557.7076416015625	2	557.324391	1112.63423	-0.93818	-0.00052287	0.13308	7.4168E-05	-0.8051	-0.0004487	557.3244445848492	97.007	0.55518	97.763	97.368	97.923	0.75586					16	10	2	0	0	0	0.77834	1	36879	36879		8.5933	6.749	1	1306100	+		35442	19079	26005	26180	34465	34465					0.08241711122627748
LYLVATSKKNA	11	Unmodified	_LYLVATSKKNA_					0	0	0		ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	MULTI-MSMS	A375_MHC_IP_R2	2	1207.5980224609375	1	1207.7045	1206.69722	0.20587	0.00024863	-2.0917	-0.0025261	-1.8858	-0.0022775	1207.701144795467	123.23	0.5069	123.61	123.23	123.73	0.3766					10	9	2	0	0	0	0.73283	1	47328	47328		6.2058	0.47393	1	20714000			35443	1554	26006	26181	34466	34466					0.10214232120006272
LYLVLLLIK	9	Unmodified	_LYLVLLLIK_					0	0	0		ENST00000539764.1_3_11:73689441-73691800:-|nuORF	ENST00000539764.1_3_11:73689441-73691800:-|nuORF	ENST00000539764.1_3_11:73689441-73691800:-|nuORF	MSMS	A375_MHC_IP_R1	1	363.284912109375	3	363.254494	1086.74165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.584	1	57.584	57.084	58.084	0								0	0	0	0.15486	1	20664	20664		5.2969	4.1035	1				35444	13265	26007	26182	34467	34467					0.20175288004134018
LYMFHWTL	8	Unmodified	_LYMFHWTL_					0	0	0			REV__ENST00000298999.7_2_10:99923151-99968013:+|nuORF	REV__ENST00000298999.7_2_10:99923151-99968013:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	555.3502197265625	2	555.775688	1109.53682	-0.80004	-0.00044464	3.017	0.0016768	2.2169	0.0012321	555.7769662282375	96.284	0.50783	97.035	96.805	97.313	0.75045					11	9	2	0	0	0	0.96296	1	36624	36624		10.183	3.4602	1	498660	+		35445	23402	26008	26183	34468	34468					-0.013563940778794858
LYMFHWTL	8	Unmodified	_LYMFHWTL_					0	0	0			REV__ENST00000298999.7_2_10:99923151-99968013:+|nuORF	REV__ENST00000298999.7_2_10:99923151-99968013:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	555.775688	1109.53682	-0.45915	-0.00025519	2.8309	0.0015733	2.3717	0.0013181	555.777176004784	96.937	0.50703	96.937	96.68	97.187	0	-0.048921	-6.9729E-05	NaN	10.183	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1384700	+		35446	23402	26008	26183							-0.013563940778794858
LYMPMYLHPD	10	Unmodified	_LYMPMYLHPD_					0	0	0			REV__OR5AC2|p.H58Y|1|0.34|ENSG00000196578|chr3:98087344-98087344|C/T|missense_variant	REV__OR5AC2|p.H58Y|1|0.34|ENSG00000196578|chr3:98087344-98087344|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	640.2247924804688	2	640.296127	1278.5777	-0.69782	-0.00044681	0.81359	0.00052094	0.11577	7.4129E-05	640.2966251168563	48.272	0.80635	49.029	48.678	49.485	0.75737					21	15	2	0	0	0	0.93799	1	18236	18236		6.7232	0	1	1247400	+		35447	27685	26009	26184	34469	34469					-0.05044420820581763
LYMWDLPLPRL	11	Unmodified	_LYMWDLPLPRL_					0	0	0			REV__ENST00000481541.1_1_2:85786016-85788551:-|nuORF	REV__ENST00000481541.1_1_2:85786016-85788551:-|nuORF	MSMS	A375_MHC_IP_R1	1	708.7532958984375	2	708.889041	1415.76353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.122	1	72.122	71.622	72.622	0								0	0	0	0.1624	1	26230	26230		6.2058	0.47393	1		+		35448	17891	26010	26185	34470	34470					0.07227724690369541
LYMYMLGPF	9	Unmodified	_LYMYMLGPF_					0	0	0		ENST00000378536.4_1_1:2240819-2241002:+|nuORF	ENST00000378536.4_1_1:2240819-2241002:+|nuORF	ENST00000378536.4_1_1:2240819-2241002:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	568.2112426757812	2	567.771757	1133.52896	-0.12346	-7.0096E-05	-4.4463	-0.0025245	-4.5697	-0.0025946	567.7685791998016	92.922	0.30496	92.922	92.718	93.023	0					6	5	2	0	0	0	0.60623	1	34182	34182		14.582	2.0501	1	1003900			35449	11317	26011	26186	34471	34471					-0.03246289389676349
LYNATIWEY	9	Unmodified	_LYNATIWEY_					0	0	0			REV__ENTPD3|p.G186E|1|0.08|ENSG00000168032|chr3:40414800-40414800|G/A|missense_variant	REV__ENTPD3|p.G186E|1|0.08|ENSG00000168032|chr3:40414800-40414800|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	391.62530517578125	3	391.525602	1171.55498	-0.093176	-3.6481E-05	0.24732	9.6834E-05	0.15415	6.0353E-05	391.5256252146696	91.853	0.55615	92.587	92.376	92.933	0.73451					14	10	2	0	0	0	0.6656	2	34877	34877;34970		6.6304	0	1	1471100	+		35450	26578	26012	26187	34472;34473	34472					-0.02393980622196068
LYNFLLLKIN	10	Unmodified	_LYNFLLLKIN_					0	0	0		ENSG00000175877|ENST00000320531|TMEM270	ENSG00000175877|ENST00000320531|TMEM270	ENSG00000175877|ENST00000320531|TMEM270	MULTI-MSMS	A375_MHC_IP_R1	1	625.7783813476562	2	625.878999	1249.74344	-0.91697	-0.00057391	0.14151	8.8569E-05	-0.77546	-0.00048534	626.380781835136	141.95	0.71049	141.95	141.37	142.08	0					28	13	4	0	0	0	0.72378	1	54501	54501		1.6526	0	1	1276200			35451	7987	26013	26188	34474	34474					0.12856297022108265
LYNFLLLKIN	10	Unmodified	_LYNFLLLKIN_					0	0	0		ENSG00000175877|ENST00000320531|TMEM270	ENSG00000175877|ENST00000320531|TMEM270	ENSG00000175877|ENST00000320531|TMEM270	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	625.878999	1249.74344	-0.91697	-0.00057391	0.14151	8.8569E-05	-0.77546	-0.00048534	626.380781835136	141.95	0.71049	141.95	141.37	142.08	0	0.0091396	0.00025365	NaN	1.6526	28	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1276200			35452	7987	26013	26188							0.12856297022108265
LYNIVKEY	8	Unmodified	_LYNIVKEY_					0	0	0			REV__ENSG00000267978|ENST00000595065|MAGEA9B	REV__ENSG00000267978|ENST00000595065|MAGEA9B	MULTI-SECPEP	A375_MHC_IP_R1	1	521.6834716796875	2	521.2844	1040.55425	-0.51216	-0.00026698	-0.54889	-0.00028613	-1.0611	-0.00055311	521.283810235689	59.32	0.35467	59.32	59.194	59.548	0					8	6	2	0	0	0	0.972	1	21365	21365		2.0598	0	1	1392500	+		35453	18250	26014	26189	34475	34475					0.035592247287468126
LYNKQVWDQT	10	Unmodified	_LYNKQVWDQT_					0	0	0			REV__MAGEA10|p.E278K|1|0.54|ENSG00000124260|chrX:152134789-152134789|C/T|missense_variant	REV__MAGEA10|p.E278K|1|0.54|ENSG00000124260|chrX:152134789-152134789|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	647.7491455078125	2	647.824952	1293.63535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.015	1	85.015	84.515	85.515	0								0	0	0	0.15465	1	31152	31152		5.7319	1.5423	1		+		35454	26973	26015	26190	34476	34476					0.0002788070084989158
LYNLIDEKL	9	Unmodified	_LYNLIDEKL_					0	0	0			REV__ENSG00000137992|ENST00000370132|DBT	REV__ENSG00000137992|ENST00000370132|DBT	MULTI-SECPEP	A375_MHC_IP_R1	1	561.2159423828125	2	560.816064	1119.61758	-0.52878	-0.00029655	0.536	0.0003006	0.0072161	4.0469E-06	560.8162612449293	76.172	0.35286	76.172	76.017	76.37	0					10	6	2	0	0	0	0.4465	1	27793	27793		31.268	6.2774	1	1258400	+		35455	19054	26016	26191	34477	34477					0.06255165445986677
LYNLTGLSV	9	Unmodified	_LYNLTGLSV_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-SECPEP	A375_MHC_IP_R1	1	490.6760559082031	2	490.276575	978.538597	-0.47286	-0.00023183	-1.0934	-0.00053606	-1.5663	-0.0007679	490.2761782997918	91.116	0.70796	91.116	90.896	91.604	0					20	13	2	0	0	0	0.14572	1	33488	33488		38.176	0	1	1575400			35456	8031	26017	26192	34478	34478					0.048469382116991255
LYPADWSV	8	Unmodified	_LYPADWSV_					0	0	0		ENST00000608357.1_1_1:113060547-113060847:-|nuORF	ENST00000608357.1_1_1:113060547-113060847:-|nuORF	ENST00000608357.1_1_1:113060547-113060847:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	475.66009521484375	2	475.734543	949.454533	-0.57383	-0.00027299	0.23316	0.00011092	-0.34066	-0.00016207	475.7347555153383	52.668	1.6244	52.668	51.575	53.199	0					71	31	3	0	0	0	0.73946	1	18423	18423		23.148	3.7094	1	7438500			35457	13928	26018	26193	34479	34479					-0.022215928851892386
LYPCHYLHS	9	Unmodified	_LYPCHYLHS_					0	0	0			REV__ENST00000432928.1_1_7:109639130-109639220:-|nuORF	REV__ENST00000432928.1_1_7:109639130-109639220:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	566.6973266601562	2	566.765852	1131.51715	-0.45027	-0.0002552	1.2745	0.00072235	0.82424	0.00046715	566.7665839586634	80.682	0.91839	81.427	80.961	81.879	0.74473					30	17	3	0	0	0	0.67372	1	30455	30455		9.3474	9.3474	1	4037900	+		35458	24722	26019	26194	34480	34480					-0.04334770088644291
LYPDLTQGL	9	Unmodified	_LYPDLTQGL_					0	0	0			REV__ENST00000536995.5_1_11:72535848-72537775:+|nuORF	REV__ENST00000536995.5_1_11:72535848-72537775:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	511.68121337890625	2	510.274032	1018.53351	-0.39913	-0.00020367	0.74441	0.00037985	0.34528	0.00017619	510.2738160561982	61.933	1.5346	61.933	61.534	63.069	0					99	29	7	0	0	0	0.55818	1	22493	22493		16.942	3.8998	1	111740000	+		35459	25918	26020	26195	34481	34481					0.02498634349092299
LYPEIPRKL	9	Unmodified	_LYPEIPRKL_					0	0	0		ENSG00000039650|ENST00000322344|PNKP;ENST00000594661.5_1_19:50364507-50367546:-|nuORF;nc|ENSG00000039650|Q96T60-2|PNKP;ENST00000593946.5_1_19:50364507-50370327:-|nuORF	ENSG00000039650|ENST00000322344|PNKP	ENSG00000039650|ENST00000322344|PNKP	MULTI-MSMS	A375_MHC_IP_R1	1	377.2975158691406	3	376.89737	1127.67028	0.40717	0.00015346	0.020079	7.5679E-06	0.42725	0.00016103	376.8973627611393	55.866	0.7621	55.866	55.482	56.244	0					31	14	3	0	0	0	0.38603	1	19977	19977		23.79	4.4278	1	10565000			35460	1161	26021	26196	34482	34482					0.11155168299455909
LYPEIPRKL	9	Unmodified	_LYPEIPRKL_					0	0	0		ENSG00000039650|ENST00000322344|PNKP;ENST00000594661.5_1_19:50364507-50367546:-|nuORF;nc|ENSG00000039650|Q96T60-2|PNKP;ENST00000593946.5_1_19:50364507-50370327:-|nuORF	ENSG00000039650|ENST00000322344|PNKP	ENSG00000039650|ENST00000322344|PNKP	MULTI-SECPEP	A375_MHC_IP_R1	1	564.1844482421875	2	564.842416	1127.67028	-0.33614	-0.00018987	-0.6881	-0.00038867	-1.0242	-0.00057854	564.8423927505414	55.93	0.45691	55.93	55.635	56.092	0					14	8	2	0	0	0	0.65623	1	19981	19981		19.257	13.497	1	1474900			35461	1161	26021	26196	34483	34483					0.11155168299455909
LYPEIPRKL	9	Unmodified	_LYPEIPRKL_					0	0	0		ENSG00000039650|ENST00000322344|PNKP;ENST00000594661.5_1_19:50364507-50367546:-|nuORF;nc|ENSG00000039650|Q96T60-2|PNKP;ENST00000593946.5_1_19:50364507-50370327:-|nuORF	ENSG00000039650|ENST00000322344|PNKP	ENSG00000039650|ENST00000322344|PNKP	MULTI-MSMS	A375_MHC_IP_R2	2	377.29754638671875	3	376.89737	1127.67028	0.064481	2.4303E-05	0.12909	4.8653E-05	0.19357	7.2956E-05	376.89740455993876	55.003	0.81541	55.754	55.422	56.237	0.75075					32	15	3	0	0	0	0.2002	1	20739	20739		28.495	17.695	1	14561000			35462	1161	26021	26196	34484	34484					0.11155168299455909
LYPEIPRKL	9	Unmodified	_LYPEIPRKL_					0	0	0		ENSG00000039650|ENST00000322344|PNKP;ENST00000594661.5_1_19:50364507-50367546:-|nuORF;nc|ENSG00000039650|Q96T60-2|PNKP;ENST00000593946.5_1_19:50364507-50370327:-|nuORF	ENSG00000039650|ENST00000322344|PNKP	ENSG00000039650|ENST00000322344|PNKP	MULTI-SECPEP	A375_MHC_IP_R2	2	565.2421875	2	564.842416	1127.67028	-0.6109	-0.00034506	-0.27292	-0.00015416	-0.88383	-0.00049922	564.842200446198	55.033	0.40863	55.783	55.575	55.984	0.75075					11	7	2	0	0	0	0.74597	1	20822	20822		17.113	17.113	1	2578200			35463	1161	26021	26196	34485	34485					0.11155168299455909
LYPEYQYIYVF	11	Unmodified	_LYPEYQYIYVF_					0	0	0			REV__ENSG00000213996|ENST00000389363|TM6SF2	REV__ENSG00000213996|ENST00000389363|TM6SF2	MULTI-SECPEP	A375_MHC_IP_R1	1	500.6665344238281	3	499.914866	1496.72277	-0.49682	-0.00024837	1.5853	0.0007925	1.0884	0.00054413	500.24855604951813	52.7	0.20322	52.7	52.541	52.744	0					5	3	2	0	0	0	1.001	1	18737	18737		0.50596	0.051438	1	538590	+		35464	22639	26022	26197	34486	34486					-0.00572338148253948
LYPLRKYAVKA	11	Unmodified	_LYPLRKYAVKA_					0	0	0		ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENST00000373570.8_1_9:127620199-127620799:-|nuORF	ENSG00000136942|ENST00000348462|RPL35	ENSG00000136942|ENST00000348462|RPL35	MULTI-MSMS	A375_MHC_IP_R1	1	441.671142578125	3	441.271207	1320.79179	-0.046609	-2.0567E-05	0.09777	4.3143E-05	0.051161	2.2576E-05	441.2711270557875	36.041	0.35474	36.041	35.83	36.184	0					11	6	2	0	0	0	0.73239	1	12074	12074		6.6235	2.5068	1	1887500			35465	4848	26023	26198	34487	34487					0.1442279066197898
LYPSLEKFE	9	Unmodified	_LYPSLEKFE_					0	0	0		ENSG00000131697|ENST00000378156|NPHP4;nc|ENSG00000131697|O75161-2|NPHP4;ENST00000478423.6_1_1:5965468-6029316:-|nuORF	ENSG00000131697|ENST00000378156|NPHP4	ENSG00000131697|ENST00000378156|NPHP4	MULTI-MSMS	A375_MHC_IP_R2	2	376.2659912109375	3	375.865735	1124.57538	0.20786	7.8127E-05	0.32968	0.00012391	0.53754	0.00020204	375.8658468179007	27.862	0.7089	28.541	28.301	29.01	0.67857					18	13	2	0	0	0	0.51106	1	9571	9571		13.615	2.8154	1	3535200			35466	4342	26024	26199	34488	34488					0.0180719003762988
LYPSLEKFE	9	Unmodified	_LYPSLEKFE_					0	0	0		ENSG00000131697|ENST00000378156|NPHP4;nc|ENSG00000131697|O75161-2|NPHP4;ENST00000478423.6_1_1:5965468-6029316:-|nuORF	ENSG00000131697|ENST00000378156|NPHP4	ENSG00000131697|ENST00000378156|NPHP4	MULTI-MATCH	A375_MHC_IP_R1	1		3	375.865735	1124.57538	0.34944	0.00013134	-0.054382	-2.044E-05	0.29506	0.0001109	376.2001529614896	28.467	0.96153	28.467	28.188	29.149	0	-0.036979	-0.00036912	NaN	13.615	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6215100			35467	4342	26024	26199							0.0180719003762988
LYPSLEKFE	9	Unmodified	_LYPSLEKFE_					0	0	0		ENSG00000131697|ENST00000378156|NPHP4;nc|ENSG00000131697|O75161-2|NPHP4;ENST00000478423.6_1_1:5965468-6029316:-|nuORF	ENSG00000131697|ENST00000378156|NPHP4	ENSG00000131697|ENST00000378156|NPHP4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	375.865735	1124.57538	0.20786	7.8127E-05	0.32968	0.00012391	0.53754	0.00020204	375.8658468179007	27.862	0.7089	28.541	28.301	29.01	0.67857	0.036979	6.3948E-05	NaN	13.615	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3535200			35468	4342	26024	26199							0.0180719003762988
LYPVFKHI	8	Unmodified	_LYPVFKHI_					0	0	0			REV__ENST00000466147.5_1_3:49062090-49062580:-|nuORF	REV__ENST00000466147.5_1_3:49062090-49062580:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	509.1834411621094	2	508.80002	1015.58549	-0.28909	-0.00014709	0.88472	0.00045014	0.59563	0.00030306	508.800384446968	53.715	0.4073	53.715	53.555	53.962	0					18	7	3	0	0	0	0.90224	1	19235	19235		13.508	0	1	1354500	+		35469	21482	26025	26200	34489	34489					0.07831842553514434
LYPVFKHI	8	Unmodified	_LYPVFKHI_					0	0	0			REV__ENST00000466147.5_1_3:49062090-49062580:-|nuORF	REV__ENST00000466147.5_1_3:49062090-49062580:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	508.80002	1015.58549	-1.2418	-0.00063183	2.564	0.0013046	1.3222	0.00067272	508.80092987765073	52.766	0.50673	53.517	53.284	53.79	0.75105	-0.098654	0.00050162	NaN	13.508	16	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	819700	+		35470	21482	26025	26200							0.07831842553514434
LYQGAAQY	8	Unmodified	_LYQGAAQY_					0	0	0		ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENSG00000142347|ENST00000644032|MYO1F;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;ENST00000594774.5_1_19:8618146-8642307:-|nuORF	ENST00000594977.5_1_19:8612968-8642307:-|nuORF	ENST00000594977.5_1_19:8612968-8642307:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	457.62322998046875	2	457.224342	912.434132	-0.18408	-8.4166E-05	-0.53874	-0.00024632	-0.72282	-0.00033049	457.22403478072215	118.11	0.40472	118.72	118.59	119	0.60909					12	7	2	0	0	0	0.77123	1	44850	44850		14.582	2.9414	1	6278200			35471	5305	26026	26201	34490	34490					-0.025587635450051494
LYQGLSTAT	9	Unmodified	_LYQGLSTAT_					0	0	0		ENST00000483825.5_1_1:167400920-167403349:-|nuORF;ENST00000470379.1_1_1:167400920-167408655:-|nuORF;ENST00000476733.5_1_1:167400920-167408655:-|nuORF;nc|ENSG00000198821|P20963-3|CD247;ENSG00000198821|ENST00000362089|CD247	ENST00000483825.5_1_1:167400920-167403349:-|nuORF	ENST00000483825.5_1_1:167400920-167403349:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	476.6606140136719	2	477.250557	952.486562	-0.40178	-0.00019175	0.01835	8.7577E-06	-0.38343	-0.00018299	477.2504620661648	35.986	0.40595	35.986	35.727	36.133	0					11	7	2	0	0	0	0.53748	1	11939	11939		13.042	2.9685	1	1929900			35472	9335	26027	26202	34491	34491					0.008417747979478918
LYQIGELSV	9	Unmodified	_LYQIGELSV_					0	0	0			REV__nc|ENSG00000112877|Q9P209-2|CEP72	REV__nc|ENSG00000112877|Q9P209-2|CEP72	MULTI-SECPEP	A375_MHC_IP_R1	1	511.1892395019531	2	511.281857	1020.54916	-0.0092708	-4.74E-06	-2.8414	-0.0014528	-2.8507	-0.0014575	511.2817745865367	126.87	0.55539	126.87	126.46	127.01	0					16	10	3	0	0	0	0.24548	1	48359	48359		22.736	0	1	7197500	+		35473	17760	26028	26203	34492	34492					0.039709208661633966
LYQLTART	8	Unmodified	_LYQLTART_					0	0	0			REV__nc|ENSG00000174233|O43306-2|ADCY6	REV__nc|ENSG00000174233|O43306-2|ADCY6	MULTI-MSMS	A375_MHC_IP_R1	1	483.15966796875	2	483.274367	964.53418	-0.60451	-0.00029214	-0.34941	-0.00016886	-0.95392	-0.00046101	483.274337294193	25.991	0.15112	25.991	25.917	26.068	0					4	2	2	0	0	0	0.7338	1	7662	7662		24.674	2.9272	1	1261300	+		35474	21275	26029	26204	34493	34493					0.05049473788801606
LYQMMMQF	8	Unmodified	_LYQMMMQF_					0	0	0			REV__nc|ENSG00000166016|Q8N961-2|ABTB2	REV__nc|ENSG00000166016|Q8N961-2|ABTB2	MULTI-MSMS	A375_MHC_IP_R2	2	546.7264404296875	2	546.239766	1090.46498	-0.79827	-0.00043605	3.2422	0.001771	2.4439	0.001335	546.7410782438085	75.599	0.56158	76.34	76.129	76.691	0.74052					15	10	2	0	0	0	0.7758	1	28688	28688		10.183	0.10947	1	1068600	+		35475	20645	26030	26205	34494	34494					-0.07663392818267312
LYQNRENWRRY	11	Unmodified	_LYQNRENWRRY_					0	0	0		ENST00000519078.6_1_10:62538154-62544481:+|nuORF;ENST00000316629.8_1_10:62538265-62544481:+|nuORF	ENST00000519078.6_1_10:62538154-62544481:+|nuORF	ENST00000519078.6_1_10:62538154-62544481:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	532.7047729492188	3	533.270929	1596.79096	-0.94345	-0.00050311	1.1407	0.00060833	0.1973	0.00010521	533.271401038651	68.336	0.30468	68.336	68.159	68.463	0					7	5	2	0	0	0	1.0004	1	24765	24765		0.40827	0	1	756040			35476	10661	26031	26206	34495	34495					0.016433442749757887
LYQQIKAGAY	10	Unmodified	_LYQQIKAGAY_					0	0	0		ENST00000508662.5_1_5:149618053-149669203:-|nuORF;ENST00000523845.5_1_7:44260423-44302632:-|nuORF;nc|ENSG00000148660|Q13555-11|CAMK2G;ENST00000497584.5_1_7:44259663-44373862:-|nuORF;nc|ENSG00000148660|Q13555-3|CAMK2G;nc|ENSG00000145349|Q13557-11|CAMK2D;nc|ENSG00000148660|Q13555-5|CAMK2G;nc|ENSG00000148660|Q13555-4|CAMK2G;nc|ENSG00000148660|Q13555-7|CAMK2G;ENSG00000145349|ENST00000511664|CAMK2D;nc|ENSG00000148660|Q13555-9|CAMK2G;nc|ENSG00000058404|Q13554-5|CAMK2B;nc|ENSG00000058404|Q13554-2|CAMK2B;nc|ENSG00000148660|Q13555-2|CAMK2G;nc|ENSG00000148660|Q13555-8|CAMK2G;nc|ENSG00000148660|Q13555|CAMK2G;nc|ENSG00000148660|Q13555-6|CAMK2G;ENSG00000148660|ENST00000423381|CAMK2G;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000058404|Q13554-8|CAMK2B;ENST00000472912.5_1_10:75578585-75620616:-|nuORF;nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000058404|Q13554-7|CAMK2B;nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000070808|Q9UQM7|CAMK2A;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000058404|Q13554-4|CAMK2B;ENSG00000070808|ENST00000671881|CAMK2A;nc|ENSG00000058404|Q13554-6|CAMK2B;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000148660|Q13555-10|CAMK2G;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000058404|Q13554-3|CAMK2B;nc|ENSG00000145349|Q13557-3|CAMK2D;ENSG00000058404|ENST00000395749|CAMK2B	ENST00000508662.5_1_5:149618053-149669203:-|nuORF	ENST00000508662.5_1_5:149618053-149669203:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	577.7675170898438	2	577.813856	1153.61316	-0.0045812	-2.6471E-06	0.52431	0.00030295	0.51973	0.00030031	577.8144771017171	71.471	0.25233	71.471	71.313	71.565	0					8	4	2	0	0	0	0.70496	1	25912	25912		10.074	1.3285	1	1351700			35477	12881	26032	26207	34496	34496					0.04249701023104535
LYQQIKAGAY	10	Unmodified	_LYQQIKAGAY_					0	0	0		ENST00000508662.5_1_5:149618053-149669203:-|nuORF;ENST00000523845.5_1_7:44260423-44302632:-|nuORF;nc|ENSG00000148660|Q13555-11|CAMK2G;ENST00000497584.5_1_7:44259663-44373862:-|nuORF;nc|ENSG00000148660|Q13555-3|CAMK2G;nc|ENSG00000145349|Q13557-11|CAMK2D;nc|ENSG00000148660|Q13555-5|CAMK2G;nc|ENSG00000148660|Q13555-4|CAMK2G;nc|ENSG00000148660|Q13555-7|CAMK2G;ENSG00000145349|ENST00000511664|CAMK2D;nc|ENSG00000148660|Q13555-9|CAMK2G;nc|ENSG00000058404|Q13554-5|CAMK2B;nc|ENSG00000058404|Q13554-2|CAMK2B;nc|ENSG00000148660|Q13555-2|CAMK2G;nc|ENSG00000148660|Q13555-8|CAMK2G;nc|ENSG00000148660|Q13555|CAMK2G;nc|ENSG00000148660|Q13555-6|CAMK2G;ENSG00000148660|ENST00000423381|CAMK2G;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000058404|Q13554-8|CAMK2B;ENST00000472912.5_1_10:75578585-75620616:-|nuORF;nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000058404|Q13554-7|CAMK2B;nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000070808|Q9UQM7|CAMK2A;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000058404|Q13554-4|CAMK2B;ENSG00000070808|ENST00000671881|CAMK2A;nc|ENSG00000058404|Q13554-6|CAMK2B;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000148660|Q13555-10|CAMK2G;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000058404|Q13554-3|CAMK2B;nc|ENSG00000145349|Q13557-3|CAMK2D;ENSG00000058404|ENST00000395749|CAMK2B	ENST00000508662.5_1_5:149618053-149669203:-|nuORF	ENST00000508662.5_1_5:149618053-149669203:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	577.813856	1153.61316	-0.18557	-0.00010723	1.1852	0.00068481	0.9996	0.00057758	577.8145782568735	70.593	0.25298	71.327	71.2	71.453	0.73421	-0.071807	0.00017091	NaN	10.074	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1620300			35478	12881	26032	26207							0.04249701023104535
LYQRHKKT	8	Unmodified	_LYQRHKKT_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	A375_MHC_IP_R1	1	1073.6385498046875	1	1073.62144	1072.61416	-0.48407	-0.00051971	1.4599	0.0015674	0.97583	0.0010477	1075.6267776572756	123.7	1.1073	123.7	123.18	124.29	0					47	21	4	0	0	0	0.77702	1	46507	46507		5.7604	1.0044	1	44397000			35479	10030	26033	26208	34497	34497					0.08075960182668496
LYQSLLTQV	9	Unmodified	_LYQSLLTQV_					0	0	0		nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;ENSG00000143493|ENST00000366994|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	MULTI-SECPEP	A375_MHC_IP_R1	1	533.2032470703125	2	532.802957	1063.59136	-0.60168	-0.00032058	0.56971	0.00030355	-0.031963	-1.703E-05	532.8031666588935	104.5	0.75964	104.5	104.18	104.94	0					25	14	3	0	0	0	0.076731	1	38365	38365		69.105	25.333	1	1420600			35480	5400	26034	26209	34498	34498					0.062108962745242025
LYQSLLTQV	9	Unmodified	_LYQSLLTQV_					0	0	0		nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;ENSG00000143493|ENST00000366994|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	532.802957	1063.59136	-0.68631	-0.00036567	0.73924	0.00039387	0.052931	2.8202E-05	532.8032554474695	103.62	0.66144	104.38	104.04	104.7	0.76428	-0.057254	0.00011474	NaN	69.105	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1593000			35481	5400	26034	26209							0.062108962745242025
LYQYLLFL	8	Unmodified	_LYQYLLFL_					0	0	0			REV__ENSG00000103335|ENST00000301015|PIEZO1	REV__ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	A375_MHC_IP_R2	2	537.47802734375	2	536.807511	1071.60047	-0.77424	-0.00041562	-0.42634	-0.00022886	-1.2006	-0.00064448	536.8069485352567	109.49	0.50536	110.23	109.93	110.43	0.74683					11	9	2	0	0	0	0.7758	1	41271	41271		10.183	0.80027	1	1363600	+		35482	17272	26035	26210	34499	34499					0.06753289630842119
LYQYRVFGTYT	11	Unmodified	_LYQYRVFGTYT_					0	0	0		ENSG00000084090|ENST00000337288|STARD7;ENST00000462501.1_1_2:96858901-96861247:-|nuORF	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	MSMS	A375_MHC_IP_R1	1	705.75537109375	2	705.856252	1409.69795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.133	1	76.133	75.633	76.633	0								0	0	0	0.16191	1	27747	27747		8.7454	2.5396	1				35483	1793	26036	26211	34500	34500					0.009490267690352994
LYRAERIA	8	Unmodified	_LYRAERIA_					0	0	0		RYR3|p.G4567R|1|0.35|ENSG00000198838|chr15:33853582-33853582|G/A|missense_variant	RYR3|p.G4567R|1|0.35|ENSG00000198838|chr15:33853582-33853582|G/A|missense_variant	RYR3|p.G4567R|1|0.35|ENSG00000198838|chr15:33853582-33853582|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	496.1846923828125	2	496.287808	990.561064	0.084379	4.1876E-05	-2.2246	-0.0011041	-2.1403	-0.0010622	496.2871248942695	69.605	0.45494	69.605	69.427	69.882	0					9	8	2	0	0	0	0.7338	1	25363	25363		24.674	2.9272	1	1224700			35484	29105	26037	26212	34501	34501					0.06540582399986761
LYRHFDQH	8	Unmodified	_LYRHFDQH_					0	0	0		ENSG00000074657|ENST00000591808|ZNF532;ENST00000394628.2_1_10:79492938-79493973:+|nuORF	ENSG00000074657|ENST00000591808|ZNF532	ENSG00000074657|ENST00000591808|ZNF532	MSMS	A375_MHC_IP_R1	1	558.1687622070312	2	558.27269	1114.53083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.651	1	61.651	61.151	62.151	0								0	0	0	0.16876	1	22238	22238		12.532	0.89125	1				35485	1588	26038	26213	34502	34502					-0.02185776265196182
LYRHKFRVM	9	Unmodified	_LYRHKFRVM_					0	0	0			REV__ENST00000543355.5_1_12:121017699-121019165:-|nuORF	REV__ENST00000543355.5_1_12:121017699-121019165:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	416.6318054199219	3	417.237732	1248.69137	-0.30695	-0.00012807	1.1075	0.00046208	0.80052	0.00033401	417.2381052276151	18.905	0.18035	19.508	19.452	19.633	0.60308					7	3	3	0	0	0	0.7911	1	5632	5632		7.609	4.7657	1	23823000	+		35486	20746	26039	26214	34503	34503					0.07696855127323943
LYRLKLLR	8	Unmodified	_LYRLKLLR_					0	0	0			REV__nc|ENSG00000198836|O60313-13|OPA1	REV__nc|ENSG00000198836|O60313-13|OPA1	MULTI-SECPEP	A375_MHC_IP_R2	2	1075.2576904296875	1	1074.71461	1073.70733	0.15119	0.00016249	-0.70544	-0.00075814	-0.55424	-0.00059565	1075.7161808098836	119.18	1.5739	119.71	118.77	120.34	0.5321					56	30	2	0	0	0	0.972	1	45460	45460		2.8892	0	1	125820000	+		35487	22426	26040	26215	34504	34504					0.17342884635877454
LYRLKLLR	8	Unmodified	_LYRLKLLR_					0	0	0			REV__nc|ENSG00000198836|O60313-13|OPA1	REV__nc|ENSG00000198836|O60313-13|OPA1	MULTI-MATCH	A375_MHC_IP_R1	1		1	1074.71461	1073.70733	0.02133	2.2924E-05	-0.722	-0.00077594	-0.70067	-0.00075302	1075.7164217848097	119.54	1.6247	119.54	118.58	120.2	0	-0.086516	-7.003E-06	NaN	2.8892	47	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126040000	+		35488	22426	26040	26215							0.17342884635877454
LYRPMLPFYVK	11	Unmodified	_LYRPMLPFYVK_					0	0	0			REV__ENST00000481096.6_1_X:51805328-51806235:-|nuORF	REV__ENST00000481096.6_1_X:51805328-51806235:-|nuORF	MSMS	A375_MHC_IP_R1	1	713.763427734375	2	713.899408	1425.78426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.691	1	94.691	94.191	95.191	0								0	0	0	0.16258	1	34804	34804		5.2969	0.76802	1		+		35489	25254	26041	26216	34505	34505					0.08840315070051474
LYRPNPIDLY	10	Unmodified	_LYRPNPIDLY_					0	0	0			REV__nc|ENSG00000122966|O14578|CIT	REV__nc|ENSG00000122966|O14578|CIT	MULTI-SECPEP	A375_MHC_IP_R1	1	631.7552490234375	2	632.340238	1262.66592	-0.50101	-0.00031681	2.1586	0.001365	1.6576	0.0010482	632.3435740757095	105.96	0.25359	105.96	105.81	106.06	0					6	4	2	0	0	0	0.92389	1	38861	38861		11.64	5.4345	1	1036900	+		35490	18225	26042	26217	34506	34506					0.04509659085920248
LYRQEITY	8	Unmodified	_LYRQEITY_					0	0	0			REV__tr|U7SU73|U7SU73_FUSNUDUF4375domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01044PE=4SV=1	REV__tr|U7SU73|U7SU73_FUSNUDUF4375domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01044PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	543.6845703125	2	543.284931	1084.55531	-0.7634	-0.00041474	-0.54227	-0.00029461	-1.3057	-0.00070935	543.2849562659917	63.476	1.9319	64.217	63.531	65.463	0.74022					71	37	2	0	0	0	0.45507	1	24386	24386		50.855	8.8995	1	45712000	+		35491	28538	26043	26218	34507	34507					0.016414390976706272
LYRREEKVQK	10	Unmodified	_LYRREEKVQK_					0	0	0			REV__nc|ENSG00000122432|Q5VX52-4|SPATA1	REV__nc|ENSG00000122432|Q5VX52-4|SPATA1	MSMS	A375_MHC_IP_R2	2	450.66015625	3	450.261371	1347.76228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.42	1	132.61	132.11	133.11	0.18953								0	0	0	0.15541	1	52092	52092		1.5923	0.37745	1		+		35492	18206	26044	26219	34508	34508					0.10231226645851166
LYRRPRKVV	9	Unmodified	_LYRRPRKVV_					0	0	0			REV__ENST00000490491.5_2_1:156203516-156212950:+|nuORF	REV__ENST00000490491.5_2_1:156203516-156212950:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	396.2801208496094	3	396.255891	1185.74584	-0.34521	-0.00013679	0.15986	6.3347E-05	-0.18534	-7.3443E-05	396.25598413106854	26.831	0.56321	27.491	27.313	27.876	0.65992					26	10	3	0	0	0	0.68705	1	9129	9129		8.1555	8.1555	1	19572000	+		35493	25385	26045	26220	34509	34509					0.16040190270382482
LYRRVIRPD	9	Unmodified	_LYRRVIRPD_					0	0	0			REV__nc|ENSG00000181085|Q8TD08-2|MAPK15	REV__nc|ENSG00000181085|Q8TD08-2|MAPK15	MULTI-SECPEP	A375_MHC_IP_R2	2	594.7536010742188	2	594.354014	1186.69348	-0.70562	-0.00041939	0.1753	0.00010419	-0.53031	-0.00031519	594.3541920086237	55.041	0.30633	55.791	55.626	55.933	0.75075					10	5	3	0	0	0	0.78798	1	20826	20826		1.6526	0.32309	1	2719100	+		35494	21636	26046	26221	34510	34510					0.107596071368107
LYRSRLCWYDY	11	Unmodified	_LYRSRLCWYDY_					0	0	0		nc|ENSG00000168487|P13497-4|BMP1;nc|ENSG00000168487|P13497-5|BMP1;nc|ENSG00000168487|P13497-2|BMP1;nc|ENSG00000168487|P13497-6|BMP1;ENSG00000168487|ENST00000306385|BMP1;ENST00000518913.5_1_8:22034120-22058713:+|nuORF;ENST00000354870.5_1_8:22035226-22069238:+|nuORF;ENST00000520982.5_1_8:22034120-22069238:+|nuORF;ENST00000523457.5_1_8:22037227-22049699:+|nuORF	nc|ENSG00000168487|P13497-4|BMP1	nc|ENSG00000168487|P13497-4|BMP1	MULTI-SECPEP	A375_MHC_IP_R2	2	512.44970703125	3	513.246733	1536.71837	-0.78363	-0.0004022	-0.033366	-1.7125E-05	-0.817	-0.00041932	513.2466376649194	82.37	0.30531	83.113	82.992	83.297	0.74294					7	5	2	0	0	0	1.001	1	31286	31286		0.50596	0.41111	1	1134800			35495	7309	26047	26222	34511	34511					-0.028521258427872453
LYRSRRRYSWR	11	Unmodified	_LYRSRRRYSWR_					0	0	0		ENST00000491215.1_1_6:32163881-32163974:-|nuORF	ENST00000491215.1_1_6:32163881-32163974:-|nuORF	ENST00000491215.1_1_6:32163881-32163974:-|nuORF	MSMS	A375_MHC_IP_R2	2	533.6543579101562	3	533.63068	1597.87021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.342	1	54.093	53.593	54.593	0.75105								0	0	0	0.1635	1	20127	20127		0.50596	0	1				35496	12656	26048	26223	34512	34512					0.09519036019787563
LYSDKKQVL	9	Unmodified	_LYSDKKQVL_					0	0	0		ENST00000463950.1_1_1:44679383-44680189:+|nuORF	ENST00000463950.1_1_1:44679383-44680189:+|nuORF	ENST00000463950.1_1_1:44679383-44680189:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	365.6131591796875	3	365.213246	1092.61791	0.16504	6.0276E-05	0.20104	7.3424E-05	0.36609	0.0001337	365.21333034054203	34.522	0.45623	34.522	34.303	34.759	0					16	8	3	0	0	0	0.46038	1	11403	11403		15.248	4.449	1	2622300			35497	12219	26049	26224	34513	34513					0.0753058516584133
LYSDPADYF	9	Unmodified	_LYSDPADYF_					0	0	0		nc|ENSG00000086205|Q04609-6|FOLH1;ENST00000529567.5_1_11:89372457-89431764:+|nuORF;nc|ENSG00000086205|Q04609-3|FOLH1;nc|ENSG00000086205|Q04609-9|FOLH1;nc|ENSG00000086205|Q04609-8|FOLH1;FOLH1|p.F705Sfs*24|1|0.63|ENSG00000086205|chr11:49146895-49146895|A/-|frameshift_variant;nc|ENSG00000086205|Q04609-7|FOLH1;ENSG00000086205|ENST00000256999|FOLH1;ENST00000526226.1_1_11:49207215-49208312:-|nuORF;nc|ENSG00000077616|Q9Y3Q0-2|NAALAD2;ENST00000524501.1_1_11:89867955-89891467:+|nuORF;ENSG00000077616|ENST00000534061|NAALAD2	nc|ENSG00000086205|Q04609-6|FOLH1	nc|ENSG00000086205|Q04609-6|FOLH1	MULTI-MSMS	A375_MHC_IP_R2	2	364.5630798339844	3	364.16244	1089.46549	0.14807	5.3922E-05	0.40476	0.0001474	0.55283	0.00020132	364.1629901045158	85.793	0.66101	86.529	86.29	86.951	0.73602					21	12	3	0	0	0	0.72985	1	32656	32656		2.4985	0	1	2810500			35498	1832	26050	26225	34514	34514					-0.07566235301578672
LYSLGLVSSP	10	Unmodified	_LYSLGLVSSP_					0	0	0			REV__nc|ENSG00000136574|P43694|GATA4	REV__nc|ENSG00000136574|P43694|GATA4	MULTI-SECPEP	A375_MHC_IP_R1	1	517.7052001953125	2	518.289682	1034.56481	-0.52737	-0.00027333	-0.2801	-0.00014517	-0.80748	-0.00041851	518.2895253071972	74.121	1.0133	74.121	73.792	74.805	0					37	19	3	0	0	0	0.64716	1	27053	27053		29.082	0	1	8456800	+		35499	18948	26051	26226	34515	34515					0.04891207383184337
LYSPGELLWV	10	Unmodified	_LYSPGELLWV_					0	0	0			REV__ENST00000303277.6_1_4:1717874-1718024:-|nuORF	REV__ENST00000303277.6_1_4:1717874-1718024:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	393.61370849609375	3	392.881497	1175.62266	-0.37068	-0.00014563	-2.4774	-0.00097331	-2.8481	-0.0011189	393.2146259690435	39.07	1.0202	39.844	39.453	40.473	0.77451					46	19	4	0	0	0	0.64579	1	14393	14393		17.443	3.2245	1	4623800	+		35500	23444	26052	26227	34516	34516					0.0418746930861289
LYSPGELLWV	10	Unmodified	_LYSPGELLWV_					0	0	0			REV__ENST00000303277.6_1_4:1717874-1718024:-|nuORF	REV__ENST00000303277.6_1_4:1717874-1718024:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	589.218017578125	2	588.818607	1175.62266	-0.73174	-0.00043086	-0.26843	-0.00015805	-1.0002	-0.00058891	588.8183142112659	39.12	0.40949	39.894	39.708	40.118	0.77451					14	7	3	0	0	0	0.53116	1	14467	14467		37.974	11.953	1	3622000	+		35501	23444	26052	26227	34517	34517					0.0418746930861289
LYSSCTSF	8	Unmodified	_LYSSCTSF_					0	0	0			REV__OR8K1|p.H250Y|1|0.39|ENSG00000150261|chr11:56346786-56346786|C/T|missense_variant	REV__OR8K1|p.H250Y|1|0.39|ENSG00000150261|chr11:56346786-56346786|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	454.1556091308594	2	454.196936	906.379319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.693	1	38.468	37.968	38.968	0.77451								0	0	0	0.16876	1	13810	13810		15.768	3.2367	1		+		35502	27653	26053	26228	34518	34518					-0.07761518407914991
LYSYDLTCTQH	11	Unmodified	_LYSYDLTCTQH_					0	0	0			REV__nc|ENSG00000007516|O94812-7|BAIAP3	REV__nc|ENSG00000007516|O94812-7|BAIAP3	MSMS	A375_MHC_IP_R2	2	672.0568237304688	2	672.300452	1342.58635	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.73	1	119.34	118.84	119.84	0.60909								0	0	0	0.16179	1	45127	45127		9.3831	1.7742	1		+		35503	16159	26054	26229	34519	34519					-0.07123775650416064
LYTAFFVAY	9	Unmodified	_LYTAFFVAY_					0	0	0			REV__nc|ENSG00000135472|Q9BWQ8-2|FAIM2	REV__nc|ENSG00000135472|Q9BWQ8-2|FAIM2	MULTI-MSMS	A375_MHC_IP_R2	2	548.182861328125	2	547.781493	1093.54843	-1.0544	-0.0005776	4.3384	0.0023765	3.284	0.0017989	547.7834789941264	23.677	0.35663	24.308	24.232	24.588	0.63014					8	6	2	0	0	0	0.62719	1	7703	7703		13.508	0	1	2315900	+		35504	18855	26055	26230	34520	34520					0.005401262171062626
LYTAFFVAY	9	Unmodified	_LYTAFFVAY_					0	0	0			REV__nc|ENSG00000135472|Q9BWQ8-2|FAIM2	REV__nc|ENSG00000135472|Q9BWQ8-2|FAIM2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	547.781493	1093.54843	-1.0544	-0.0005776	4.3384	0.0023765	3.284	0.0017989	547.7834789941264	23.677	0.35663	24.308	24.232	24.588	0.63014	-0.067758	0.000199	NaN	13.508	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2315900	+		35505	18855	26055	26230							0.005401262171062626
LYTGEFGMED	10	Unmodified	_LYTGEFGMED_					0	0	0		ENST00000554644.1_1_14:93723510-93760888:-|nuORF;ENSG00000011114|ENST00000334746|BTBD7;ENST00000447253.1_1_10:13199146-13199323:-|nuORF;nc|ENSG00000011114|Q9P203-3|BTBD7	ENST00000554644.1_1_14:93723510-93760888:-|nuORF	ENST00000554644.1_1_14:93723510-93760888:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	388.2311096191406	3	387.830473	1160.46959	0.031902	1.2373E-05	0.77955	0.00030233	0.81145	0.0003147	387.8308216429854	111.18	0.86811	111.91	111.29	112.16	0.73692					30	16	3	0	0	0	0.6806	1	41934	41934		8.9762	0	1	3234400			35506	991	26056	26231	34521	34521					-0.1042251387016222
LYTLIKKI	8	Unmodified	_LYTLIKKI_					0	0	0			REV__ENST00000506030.5_2_5:65349313-65349352:+|nuORF	REV__ENST00000506030.5_2_5:65349313-65349352:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	992.3145141601562	1	991.65503	990.647754	0.22573	0.00022385	2.5796	0.0025581	2.8054	0.002782	991.6570549482661	113.35	0.30879	114.06	113.87	114.18	0.70985					7	5	2	0	0	0	0.972	1	42777	42777		2.5775	0	1	2590900	+		35507	25545	26057	26232	34522	34522					0.15205568901853894
LYTNWTTV	8	Unmodified	_LYTNWTTV_					0	0	0			REV__ENSG00000001626|ENST00000003084|CFTR	REV__ENSG00000001626|ENST00000003084|CFTR	MULTI-SECPEP	A375_MHC_IP_R2	2	498.7337341308594	2	499.2531	996.491647	-0.48204	-0.00024066	0.11215	5.5989E-05	-0.36989	-0.00018467	499.25300463498473	101.78	0.50919	102.54	102.26	102.77	0.76428					11	9	2	0	0	0	0.96296	1	38484	38484		10.183	10.183	1	1201000	+		35508	16084	26058	26233	34523	34523					-0.006739213394325816
LYVDGTSHEPF	11	Unmodified	_LYVDGTSHEPF_					0	0	0		ENSG00000171603|ENST00000377298|CLSTN1;nc|ENSG00000171603|O94985-2|CLSTN1	ENSG00000171603|ENST00000377298|CLSTN1	ENSG00000171603|ENST00000377298|CLSTN1	MULTI-SECPEP	A375_MHC_IP_R1	1	633.1949462890625	2	632.79586	1263.57717	-0.67086	-0.00042452	-1.2174	-0.00077036	-1.8882	-0.0011949	632.795144731291	59.254	0.61004	59.254	58.938	59.548	0					21	11	3	0	0	0	0.90584	1	21287	21287		17.113	0	1	3027200			35509	7619	26059	26234	34524	34524					-0.04407800944431983
LYVKGIGCYA	10	Unmodified	_LYVKGIGCYA_					0	0	0			REV__nc|ENSG00000182670|P53804-3|TTC3	REV__nc|ENSG00000182670|P53804-3|TTC3	MSMS	A375_MHC_IP_R1	1	543.7006225585938	2	543.786253	1085.55795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.719	1	99.719	99.219	100.22	0								0	0	0	0.15283	1	36636	36636		11.64	0.52583	1		+		35510	21703	26060	26235	34525	34525					0.018595712309661394
LYVYYKFWYFF	11	Unmodified	_LYVYYKFWYFF_					0	0	0			REV__ENST00000505799.1_1_5:37379427-37381852:+|nuORF	REV__ENST00000505799.1_1_5:37379427-37381852:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	546.2042846679688	3	546.939235	1637.79587	-0.4489	-0.00024552	3.642	0.0019919	3.1931	0.0017464	546.9428265089675	82.849	0.60442	82.849	82.571	83.175	0					17	11	2	0	0	0	1.0002	1	30256	30256		2.8433	2.3373	1	1014900	+		35511	25541	26061	26236	34526	34526					0.002488353650278441
LYVYYKFWYFF	11	Unmodified	_LYVYYKFWYFF_					0	0	0			REV__ENST00000505799.1_1_5:37379427-37381852:+|nuORF	REV__ENST00000505799.1_1_5:37379427-37381852:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	546.4266357421875	3	546.939235	1637.79587	-0.52453	-0.00028689	-2.4676	-0.0013496	-2.9922	-0.0016365	547.2714881418123	95.01	0.55948	95.76	95.533	96.093	0.75045					16	10	2	0	0	0	1.0011	1	36205	36205		0.45452	0.45452	1	1560300	+		35512	25541	26061	26236	34527	34527					0.002488353650278441
LYWEPEALY	9	Unmodified	_LYWEPEALY_					0	0	0		nc|ENSG00000151136|A6QL63-2|ABTB3;nc|ENSG00000151136|A6QL63-3|ABTB3;ENSG00000151136|ENST00000280758|ABTB3	nc|ENSG00000151136|A6QL63-2|ABTB3	nc|ENSG00000151136|A6QL63-2|ABTB3	MSMS	A375_MHC_IP_R1	1	592.1537475585938	2	592.28714	1182.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.1	1	104.1	103.6	104.6	0								0	0	0	0.15486	1	38227	38227		13.508	1.8676	1				35513	5881	26062	26237	34528	34528					-0.024250964794418906
LYWEPEALY	9	Unmodified	_LYWEPEALY_					0	0	0		nc|ENSG00000151136|A6QL63-2|ABTB3;nc|ENSG00000151136|A6QL63-3|ABTB3;ENSG00000151136|ENST00000280758|ABTB3	nc|ENSG00000151136|A6QL63-2|ABTB3	nc|ENSG00000151136|A6QL63-2|ABTB3	MSMS	A375_MHC_IP_R1	1	592.4469604492188	2	592.28714	1182.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.39	1	104.39	103.89	104.89	0								0	0	0	0.15486	1	38330	38330		8.5933	0.68312	1				35514	5881	26062	26237	34529	34529					-0.024250964794418906
LYWEPEALY	9	Unmodified	_LYWEPEALY_					0	0	0		nc|ENSG00000151136|A6QL63-2|ABTB3;nc|ENSG00000151136|A6QL63-3|ABTB3;ENSG00000151136|ENST00000280758|ABTB3	nc|ENSG00000151136|A6QL63-2|ABTB3	nc|ENSG00000151136|A6QL63-2|ABTB3	MSMS	A375_MHC_IP_R2	2	592.2415161132812	2	592.28714	1182.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.07	1	103.84	103.34	104.34	0.76428								0	0	0	0.15486	1	39040	39040		13.508	1.8676	1				35515	5881	26062	26237	34530	34530					-0.024250964794418906
LYWITENKLQ	10	Unmodified	_LYWITENKLQ_					0	0	0			REV__ENSG00000113732|ENST00000519374|ATP6V0E1	REV__ENSG00000113732|ENST00000519374|ATP6V0E1	MULTI-SECPEP	A375_MHC_IP_R2	2	654.6923217773438	2	654.353345	1306.69214	-0.81864	-0.00053568	-0.25698	-0.00016816	-1.0756	-0.00070384	654.353176748304	80.133	0.50492	80.878	80.607	81.112	0.74474					15	9	2	0	0	0	0.93615	1	30324	30324		7.2892	0	1	2008400	+		35516	17801	26063	26238	34531	34531					0.051059282573760356
LYWIYLATF	9	Unmodified	_LYWIYLATF_					0	0	0		ENST00000549850.1_1_14:31917543-31917612:-|nuORF	ENST00000549850.1_1_14:31917543-31917612:-|nuORF	ENST00000549850.1_1_14:31917543-31917612:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	397.2801513671875	3	397.214587	1188.62193	0.1714	6.8081E-05	-0.40466	-0.00016074	-0.23327	-9.2656E-05	397.21444230397765	21.782	0.55761	21.782	21.505	22.062	0					16	10	2	0	0	0	0.65748	1	5738	5738		10.8	10.8	1	3481900			35517	13364	26064	26239	34532	34532					0.035166746595450604
LYWIYLATF	9	Unmodified	_LYWIYLATF_					0	0	0		ENST00000549850.1_1_14:31917543-31917612:-|nuORF	ENST00000549850.1_1_14:31917543-31917612:-|nuORF	ENST00000549850.1_1_14:31917543-31917612:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	397.214587	1188.62193	0.1714	6.8081E-05	-0.40466	-0.00016074	-0.23327	-9.2656E-05	397.21444230397765	21.782	0.55761	21.782	21.505	22.062	0	0	0	NaN	10.8	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3481900			35518	13364	26064	26239							0.035166746595450604
LYWKDTRTS	9	Unmodified	_LYWKDTRTS_					0	0	0		ENSG00000125744|ENST00000245923|RTN2;nc|ENSG00000125744|O75298-3|RTN2;nc|ENSG00000125744|O75298-2|RTN2	ENSG00000125744|ENST00000245923|RTN2	ENSG00000125744|ENST00000245923|RTN2	MULTI-SECPEP	A375_MHC_IP_R1	1	584.6828002929688	2	585.301113	1168.58767	-0.1208	-7.0702E-05	-0.37401	-0.00021891	-0.49481	-0.00028961	585.3009747884292	82.082	0.76216	82.082	81.758	82.52	0					25	14	3	0	0	0	0.76827	1	29928	29928		10.824	4.6181	1	7163600			35519	3985	26065	26240	34533	34533					0.010122265006657472
LYWKDTRTS	9	Unmodified	_LYWKDTRTS_					0	0	0		ENSG00000125744|ENST00000245923|RTN2;nc|ENSG00000125744|O75298-3|RTN2;nc|ENSG00000125744|O75298-2|RTN2	ENSG00000125744|ENST00000245923|RTN2	ENSG00000125744|ENST00000245923|RTN2	MULTI-MATCH	A375_MHC_IP_R2	2		2	585.301113	1168.58767	-0.59404	-0.00034769	0.098128	5.7435E-05	-0.49591	-0.00029026	585.3012603533722	81.292	0.65868	82.037	81.673	82.332	0.74474	-0.022975	0.00034403	NaN	6.7232	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6866800			35520	3985	26065	26240							0.010122265006657472
LYWLPGAHVP	10	Unmodified	_LYWLPGAHVP_					0	0	0			REV__ENST00000414035.5_1_7:100875905-100880680:-|nuORF	REV__ENST00000414035.5_1_7:100875905-100880680:-|nuORF	MSMS	A375_MHC_IP_R2	2	576.744384765625	2	576.813659	1151.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.444	1	97.2	96.7	97.7	0.75586								0	0	0	0.14984	1	36617	36617		18.135	1.1927	1		+		35521	24500	26066	26241	34534	34534					0.04302326093898046
LYWMHIYL	8	Unmodified	_LYWMHIYL_					0	0	0		L1P2_dup1208|chr11:88107546-88109129:-|1.8698902225432863|0.3715451182625647|2.33|469.0|80|2|anti-sense	L1P2_dup1208|chr11:88107546-88109129:-|1.8698902225432863|0.3715451182625647|2.33|469.0|80|2|anti-sense	L1P2_dup1208|chr11:88107546-88109129:-|1.8698902225432863|0.3715451182625647|2.33|469.0|80|2|anti-sense	MULTI-SECPEP	A375_MHC_IP_R2	2	570.1895751953125	2	569.791338	1137.56812	-0.54146	-0.00030852	-1.5846	-0.00090288	-2.126	-0.0012114	569.7903900014968	51.534	0.45601	52.287	52.017	52.473	0.75225					18	8	3	0	0	0	0.90851	1	19456	19456		17.087	0	1	2665300			35522	14264	26067	26242	34535	34535					0.004841789562078702
LYWMNSWIPDN	11	Unmodified	_LYWMNSWIPDN_					0	0	0			REV__nc|ENSG00000140479|P29122-2|PCSK6	REV__nc|ENSG00000140479|P29122-2|PCSK6	MSMS	A375_MHC_IP_R1	1	719.8171997070312	2	719.826637	1437.63872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.892	1	97.892	97.392	98.392	0								0	0	0	0.16265	1	35965	35965		4.897	0.70751	1		+		35523	19217	26068	26243	34536	34536					-0.0625919251679079
LYWRRKQRKEL	11	Unmodified	_LYWRRKQRKEL_					0	0	0		nc|ENSG00000154134|Q96MS0-2|ROBO3;ENSG00000154134|ENST00000397801|ROBO3	nc|ENSG00000154134|Q96MS0-2|ROBO3	nc|ENSG00000154134|Q96MS0-2|ROBO3	MULTI-SECPEP	A375_MHC_IP_R2	2	526.2149658203125	3	525.979198	1574.91576	-0.29069	-0.0001529	1.7525	0.0009218	1.4618	0.0007689	526.3145665828462	136.6	1.5369	136.71	136.25	137.79	0.11134					44	29	2	0	0	0	1.0014	1	53644	53644		0.45452	0.35968	1	22272000			35524	6062	26069	26244	34537	34537					0.15130261482158858
LYWWDFNY	8	Unmodified	_LYWWDFNY_					0	0	0			REV__ENST00000582678.5_1_17:61557143-61562826:+|nuORF	REV__ENST00000582678.5_1_17:61557143-61562826:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	604.753662109375	2	603.766374	1205.5182	-0.34646	-0.00020918	-1.989	-0.0012009	-2.3355	-0.0014101	604.2655780319701	90.296	1.2173	91.028	90.699	91.916	0.7318					42	23	4	0	0	0	0.77554	1	34480	34480		11.114	2.3691	1	2409500	+		35525	20130	26070	26245	34538	34538					-0.07634232448094735
LYYFWDPDY	9	Unmodified	_LYYFWDPDY_					0	0	0		ENSG00000239713|ENST00000407997|APOBEC3G	ENSG00000239713|ENST00000407997|APOBEC3G	ENSG00000239713|ENST00000407997|APOBEC3G	MULTI-SECPEP	A375_MHC_IP_R1	1	640.6871337890625	2	641.276772	1280.53899	-0.62165	-0.00039865	3.3694	0.0021607	2.7478	0.0017621	641.278813412114	77.182	0.25361	77.182	77.083	77.336	0					6	4	2	0	0	0	0.77834	1	28126	28126		4.756	1.7608	1	730390			35526	9765	26071	26246	34539	34539					-0.09005686859086381
LYYHVFRR	8	Unmodified	_LYYHVFRR_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MSMS	A375_MHC_IP_R1	1	577.52587890625	2	577.3169	1152.61925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.698	1	99.698	99.198	100.2	0								0	0	0	0.16876	1	36629	36629		14.582	0	1				35527	9326	26072	26247	34540	34540					0.049042640452626074
LYYNDDLI	8	Unmodified	_LYYNDDLI_					0	0	0			REV__tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1	REV__tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1	MSMS	A375_MHC_IP_R2	2	514.710205078125	2	514.75039	1027.48623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.654	1	91.388	90.888	91.888	0.7345								0	0	0	0.16876	1	34493	34493		11.114	0	1		+		35528	28319	26073	26248	34541	34541					-0.02641644921891384
LYYNNIPSL	9	Unmodified	_LYYNNIPSL_					0	0	0		ENSG00000159708|ENST00000329956|LRRC36	ENSG00000159708|ENST00000329956|LRRC36	ENSG00000159708|ENST00000329956|LRRC36	MULTI-SECPEP	A375_MHC_IP_R1	1	548.699951171875	2	548.787307	1095.56006	-0.38494	-0.00021125	2.5812	0.0014165	2.1962	0.0012053	548.7895280811996	71.288	0.81133	71.288	70.953	71.765	0					21	15	2	0	0	0	0.60917	1	25942	25942		13.906	0.39817	1	4207100			35529	6384	26074	26249	34542	34542					0.016103232404248047
LYYNRVNII	9	Unmodified	_LYYNRVNII_					0	0	0		CNTNAP5|p.G337R|1|0.21|ENSG00000155052|chr2:124474829-124474829|G/A|missense_variant	CNTNAP5|p.G337R|1|0.21|ENSG00000155052|chr2:124474829-124474829|G/A|missense_variant	CNTNAP5|p.G337R|1|0.21|ENSG00000155052|chr2:124474829-124474829|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	390.28875732421875	3	389.888874	1166.64479	0.38119	0.00014862	-0.37073	-0.00014454	0.01046	4.0782E-06	389.88877052298557	35.648	0.51228	35.648	35.369	35.881	0					26	9	4	0	0	0	0.55471	1	11882	11882		17.113	1.8644	1	3470500			35530	553	26075	26250	34543	34543					0.06813693777030494
LYYNRVNII	9	Unmodified	_LYYNRVNII_					0	0	0		CNTNAP5|p.G337R|1|0.21|ENSG00000155052|chr2:124474829-124474829|G/A|missense_variant	CNTNAP5|p.G337R|1|0.21|ENSG00000155052|chr2:124474829-124474829|G/A|missense_variant	CNTNAP5|p.G337R|1|0.21|ENSG00000155052|chr2:124474829-124474829|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	390.288818359375	3	389.888874	1166.64479	-0.3612	-0.00014083	0.09272	3.6151E-05	-0.26848	-0.00010468	389.88890064075025	34.72	0.60677	35.483	35.171	35.778	0.76338					21	11	3	0	0	0	0.57432	1	12564	12564		16.149	0.90062	1	5170900			35531	553	26075	26250	34544	34544					0.06813693777030494
LYYYMFFY	8	Unmodified	_LYYYMFFY_					0	0	0		VN1R2|p.L114F|1|0.16|ENSG00000196131|chr19:53258715-53258715|C/T|missense_variant	VN1R2|p.L114F|1|0.16|ENSG00000196131|chr19:53258715-53258715|C/T|missense_variant	VN1R2|p.L114F|1|0.16|ENSG00000196131|chr19:53258715-53258715|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	605.2466430664062	2	605.269904	1208.52526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.572	1	84.311	83.811	84.811	0.73962								0	0	0	0.16876	1	31764	31764		6.3541	0.14832	1				35532	30140	26076	26251	34545	34545					-0.07066635891897022
MAADGRLVF	9	Oxidation (M)	_M(Oxidation (M))AADGRLVF_		M(1)AADGRLVF		M(42)AADGRLVF	0	0	1		ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENSG00000134987|ENST00000513710|WDR36	ENSG00000134987|ENST00000513710|WDR36	MULTI-MSMS	A375_MHC_IP_R1	1	498.6524658203125	2	498.252577	994.490601	-0.42698	-0.00021275	0.2793	0.00013916	-0.14768	-7.3584E-05	498.252782985294	58.559	2.3887	58.559	57.974	60.363	0					95	46	3	0	0	0	0.14858	1	20972	20972		41.956	16.556	1	3957700			35533	4633	26077	26252	34546	34546		241			-0.006864589799647547
MAADGRLVF	9	Oxidation (M)	_M(Oxidation (M))AADGRLVF_		M(1)AADGRLVF		M(50)AADGRLVF	0	0	1		ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENSG00000134987|ENST00000513710|WDR36	ENSG00000134987|ENST00000513710|WDR36	MULTI-SECPEP	A375_MHC_IP_R1	1	498.6526184082031	2	498.252577	994.490601	-0.31009	-0.00015451	-0.021723	-1.0823E-05	-0.33182	-0.00016533	498.2525876731993	56.94	0.76521	56.94	56.599	57.364	0					34	14	3	0	0	0	0.30925	1	20368	20368		49.554	17.249	1	9452300			35534	4633	26077	26252	34547	34547		241			-0.006864589799647547
MAADGRLVF	9	Oxidation (M)	_M(Oxidation (M))AADGRLVF_		M(1)AADGRLVF		M(42)AADGRLVF	0	0	1		ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENSG00000134987|ENST00000513710|WDR36	ENSG00000134987|ENST00000513710|WDR36	MULTI-MSMS	A375_MHC_IP_R2	2	498.6521911621094	2	498.252577	994.490601	-0.82184	-0.00040948	0.076088	3.7911E-05	-0.74575	-0.00037157	498.2526193316558	58.226	2.0303	58.975	58.069	60.1	0.74894					71	39	3	0	0	0	0.14858	1	21827	21827		41.956	16.556	1	3459700			35535	4633	26077	26252	34548	34548		241			-0.006864589799647547
MAADGRLVF	9	Oxidation (M)	_M(Oxidation (M))AADGRLVF_		M(1)AADGRLVF		M(48)AADGRLVF	0	0	1		ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENSG00000134987|ENST00000513710|WDR36	ENSG00000134987|ENST00000513710|WDR36	MULTI-SECPEP	A375_MHC_IP_R2	2	498.6527404785156	2	498.252577	994.490601	-0.74534	-0.00037137	-0.024508	-1.2211E-05	-0.76985	-0.00038358	498.2525928598915	56.094	1.0202	56.844	56.438	57.459	0.75014					45	19	3	0	0	0	0.33896	1	21137	21137		47.594	22.195	1	9718000			35536	4633	26077	26252	34549	34549		241			-0.006864589799647547
MAADGRLVF	9	Unmodified	_MAADGRLVF_					0	0	0		ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENSG00000134987|ENST00000513710|WDR36	ENSG00000134987|ENST00000513710|WDR36	MULTI-MSMS	A375_MHC_IP_R1	1	490.6549072265625	2	490.25512	978.495686	0.049647	2.434E-05	0.13403	6.5708E-05	0.18367	9.0047E-05	490.25525017076137	69.198	1.2685	69.198	68.463	69.732	0					36	24	2	0	0	0	0.032333	1	25054	25054		72.968	24.622	1	14722000			35537	4633	26077	26253	34550	34550					0.005578448826440763
MAADGRLVF	9	Unmodified	_MAADGRLVF_					0	0	0		ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENSG00000134987|ENST00000513710|WDR36	ENSG00000134987|ENST00000513710|WDR36	MULTI-MSMS	A375_MHC_IP_R2	2	490.65631103515625	2	490.25512	978.495686	-0.43667	-0.00021408	0.38289	0.00018772	-0.05378	-2.6366E-05	490.2553310557578	68.208	1.5228	68.943	68.409	69.932	0.73511					42	29	2	0	0	0	0.056914	1	25804	25804		61.602	29.296	1	13862000			35538	4633	26077	26253	34551	34551					0.005578448826440763
MAAERAVAF	9	Oxidation (M)	_M(Oxidation (M))AAERAVAF_		M(1)AAERAVAF		M(46)AAERAVAF	0	0	1		ENSG00000160113|ENST00000291442|NR2F6	ENSG00000160113|ENST00000291442|NR2F6	ENSG00000160113|ENST00000291442|NR2F6	MULTI-MSMS	A375_MHC_IP_R1	1	491.6443176269531	2	491.244752	980.474951	-0.55632	-0.00027329	0.0081413	3.9994E-06	-0.54818	-0.00026929	491.2448713838689	36.472	0.76191	36.472	36.133	36.895	0					35	14	4	0	0	0	0.12748	1	12175	12175		45.74	13.434	1	16609000			35539	6398	26078	26254	34552	34552		343			-0.0160674549703117
MAAERAVAF	9	Oxidation (M)	_M(Oxidation (M))AAERAVAF_		M(1)AAERAVAF		M(42)AAERAVAF	0	0	1		ENSG00000160113|ENST00000291442|NR2F6	ENSG00000160113|ENST00000291442|NR2F6	ENSG00000160113|ENST00000291442|NR2F6	MULTI-MSMS	A375_MHC_IP_R1	1	491.6447448730469	2	491.244752	980.474951	-0.30063	-0.00014768	-0.031978	-1.5709E-05	-0.33261	-0.00016339	491.2447195715675	37.39	1.9352	37.39	36.845	38.78	0					66	37	2	0	0	0	0.14858	2	12489	12489;12507		41.956	20.209	1	5781700			35540	6398	26078	26254	34553;34554	34553		343			-0.0160674549703117
MAAERAVAF	9	Oxidation (M)	_M(Oxidation (M))AAERAVAF_		M(1)AAERAVAF		M(46)AAERAVAF	0	0	1		ENSG00000160113|ENST00000291442|NR2F6	ENSG00000160113|ENST00000291442|NR2F6	ENSG00000160113|ENST00000291442|NR2F6	MULTI-MSMS	A375_MHC_IP_R2	2	491.64410400390625	2	491.244752	980.474951	-0.72913	-0.00035818	0.31907	0.00015674	-0.41007	-0.00020144	491.2448928432412	35.623	0.76112	36.386	36.081	36.842	0.76338					40	14	4	0	0	0	0.12748	1	12885	12885		45.74	20.341	1	21567000			35541	6398	26078	26254	34555	34555		343			-0.0160674549703117
MAAERAVAF	9	Oxidation (M)	_M(Oxidation (M))AAERAVAF_		M(1)AAERAVAF		M(53)AAERAVAF	0	0	1		ENSG00000160113|ENST00000291442|NR2F6	ENSG00000160113|ENST00000291442|NR2F6	ENSG00000160113|ENST00000291442|NR2F6	MULTI-MSMS	A375_MHC_IP_R2	2	491.6441955566406	2	491.244752	980.474951	-0.97646	-0.00047968	0.13181	6.4751E-05	-0.84465	-0.00041493	491.24493032691674	36.685	1.5788	37.455	36.85	38.429	0.7709					62	30	3	0	0	0	0.084766	1	13323	13323		53.404	28.005	1	4158800			35542	6398	26078	26254	34556	34556		343			-0.0160674549703117
MACFYDSC	8	Unmodified	_MACFYDSC_					0	0	0			REV__ENSG00000117153|ENST00000367261|KLHL12	REV__ENSG00000117153|ENST00000367261|KLHL12	MULTI-MSMS	A375_MHC_IP_R2	2	940.20654296875	1	939.304522	938.297246	-0.62604	-0.00058804	0.17353	0.000163	-0.45251	-0.00042505	939.3048307094556	56.632	0.51019	57.382	57.152	57.662	0.75015					16	9	2	0	0	0	0.77842	1	21378	21378		0.69038	0	1	6991800	+		35543	17996	26079	26255	34557	34557					-0.17437080082891043
MACFYDSC	8	Unmodified	_MACFYDSC_					0	0	0			REV__ENSG00000117153|ENST00000367261|KLHL12	REV__ENSG00000117153|ENST00000367261|KLHL12	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	939.304522	938.297246	-0.62604	-0.00058804	0.17353	0.000163	-0.45251	-0.00042505	939.3048307094556	56.632	0.51019	57.382	57.152	57.662	0.75015	-0.0037812	-0.00013489	NaN	0.69038	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6991800	+		35544	17996	26079	26255							-0.17437080082891043
MADKNIQYY	9	Oxidation (M)	_M(Oxidation (M))ADKNIQYY_		M(1)ADKNIQYY		M(56)ADKNIQYY	0	0	1		ENSG00000148158|ENST00000374232|SNX30;ENST00000604751.1_1_9:115618996-115637523:+|nuORF	ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	MULTI-MSMS	A375_MHC_IP_R1	1	581.665283203125	2	581.265881	1160.51721	-0.22045	-0.00012814	-0.22415	-0.00013029	-0.44459	-0.00025843	581.2657113801171	31.367	1.4254	31.367	31.109	32.535	0					47	27	2	0	0	0	0.073067	1	10183	10183		55.503	9.8031	1	7217000			35545	5719	26080	26256	34558	34558		306			-0.056628148793379296
MADKNIQYY	9	Unmodified	_MADKNIQYY_					0	0	0		ENSG00000148158|ENST00000374232|SNX30;ENST00000604751.1_1_9:115618996-115637523:+|nuORF	ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	MULTI-SECPEP	A375_MHC_IP_R1	1	573.66796875	2	573.268424	1144.5223	-0.3604	-0.00020661	-0.080306	-4.6037E-05	-0.44071	-0.00025264	573.26840756837	37.92	0.86918	37.92	37.249	38.118	0					28	15	3	0	0	0	0.50702	1	12876	12876		32.305	13.049	1	11186000			35546	5719	26080	26257	34559	34559					-0.04418511016706361
MADKNIQYY	9	Unmodified	_MADKNIQYY_					0	0	0		ENSG00000148158|ENST00000374232|SNX30;ENST00000604751.1_1_9:115618996-115637523:+|nuORF	ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	MULTI-MSMS	A375_MHC_IP_R2	2	573.6679077148438	2	573.268424	1144.5223	-0.83791	-0.00048035	0.069064	3.9592E-05	-0.76885	-0.00044076	573.2683101627276	37.127	0.60825	37.898	37.615	38.223	0.7709					28	11	3	0	0	0	0.0037351	1	13560	13560		137.42	65.502	1	11918000			35547	5719	26080	26257	34560	34560					-0.04418511016706361
MADQLRIEY	9	Unmodified	_MADQLRIEY_					0	0	0			REV__tr|U7SIR8|U7SIR8_FUSNUATP-dependenthelicaseIRC3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02152PE=4SV=1	REV__tr|U7SIR8|U7SIR8_FUSNUATP-dependenthelicaseIRC3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02152PE=4SV=1	MSMS	A375_MHC_IP_R2	2	569.70166015625	2	569.781699	1137.54884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.906	1	61.651	61.151	62.151	0.74503								0	0	0	0.14631	1	23070	23070		27.629	2.2295	1		+		35548	28213	26081	26258	34561	34561					-0.014428221253865559
MAEHNPQY	8	Unmodified	_MAEHNPQY_					0	0	0		ENSG00000155085|ENST00000424296|AK9;nc|ENSG00000155085|Q5TCS8-3|AK9;nc|ENSG00000155085|Q5TCS8-6|AK9;nc|ENSG00000155085|Q5TCS8-1|AK9;nc|ENSG00000155085|Q5TCS8-2|AK9	ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	MULTI-SECPEP	A375_MHC_IP_R2	2	494.6229248046875	2	495.210909	988.407265	-0.76929	-0.00038096	0.69734	0.00034533	-0.071956	-3.5633E-05	495.21120824406967	33.32	0.50826	34.072	33.84	34.348	0.75225					14	9	2	0	0	0	0.8957	1	11892	11892		28.487	2.1456	1	1349800			35549	6123	26082	26259	34562	34562					-0.0874019542784481
MAFDRYLAIC	10	Unmodified	_MAFDRYLAIC_					0	0	0		ENSG00000196832|ENST00000641879|OR11G2;nc|ENSG00000196832|Q8NGC1|OR11G2	ENSG00000196832|ENST00000641879|OR11G2	ENSG00000196832|ENST00000641879|OR11G2	MULTI-MSMS	A375_MHC_IP_R1	1	602.6593627929688	2	601.788469	1201.56239	-0.34465	-0.00020741	-4.0357	-0.0024286	-4.3804	-0.002636	602.2886216308841	50.831	0.30231	50.831	50.613	50.915	0					12	5	4	0	0	0	0.57505	1	18040	18040		22.736	0	1	1959200			35550	9088	26083	26260	34563	34563					-0.0303328761776811
MAFDRYLAIC	10	Unmodified	_MAFDRYLAIC_					0	0	0		ENSG00000196832|ENST00000641879|OR11G2;nc|ENSG00000196832|Q8NGC1|OR11G2	ENSG00000196832|ENST00000641879|OR11G2	ENSG00000196832|ENST00000641879|OR11G2	MULTI-SECPEP	A375_MHC_IP_R2	2	602.184814453125	2	601.788469	1201.56239	-0.70574	-0.00042471	-4.1556	-0.0025008	-4.8614	-0.0029255	601.7847903246493	50.064	0.56001	50.818	50.599	51.159	0.75406					14	10	2	0	0	0	0.74754	1	18832	18832		29.082	0	1	1918600			35551	9088	26083	26260	34564	34564					-0.0303328761776811
MAFLAFGATV	10	Unmodified	_MAFLAFGATV_					0	0	0			REV__tr|U7T202|U7T202_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00790PE=3SV=1	REV__tr|U7T202|U7T202_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00790PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	513.6865844726562	2	514.267696	1026.52084	-0.82217	-0.00042281	1.6213	0.00083378	0.79912	0.00041096	514.2686113505437	74.942	0.45673	75.68	75.365	75.822	0.73751					13	8	2	0	0	0	0.65982	1	28430	28430		34.102	10.082	1	1050900	+		35552	28711	26084	26261	34565	34565					0.008638996851914271
MAGCCGFFGV	10	Unmodified	_MAGCCGFFGV_					0	0	0			REV__TSPAN2|p.K154Tfs*19|1|0.44|ENSG00000134198|chr1:115057579-115057592|TTCGGAGCTTTCTT/-|frameshift_variant	REV__TSPAN2|p.K154Tfs*19|1|0.44|ENSG00000134198|chr1:115057579-115057592|TTCGGAGCTTTCTT/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	496.1683349609375	2	496.195359	990.376165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.742	1	54.742	54.242	55.242	0								0	0	0	0.15398	1	19559	19559		7.9102	2.6795	1		+		35553	18756	26085	26262	34566	34566					-0.11940808057920549
MAGCCGFFGV	10	Unmodified	_MAGCCGFFGV_					0	0	0			REV__TSPAN2|p.K154Tfs*19|1|0.44|ENSG00000134198|chr1:115057579-115057592|TTCGGAGCTTTCTT/-|frameshift_variant	REV__TSPAN2|p.K154Tfs*19|1|0.44|ENSG00000134198|chr1:115057579-115057592|TTCGGAGCTTTCTT/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	496.1673278808594	2	496.195359	990.376165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.983	1	54.735	54.235	55.235	0.75105								0	0	0	0.15398	1	20380	20380		7.9102	2.6795	1		+		35554	18756	26085	26262	34567	34567					-0.11940808057920549
MAGVRTEDSI	10	Unmodified	_MAGVRTEDSI_					0	0	0		ENSG00000074201|ENST00000525428|CLNS1A;ENST00000525359.1_1_11:77333524-77333638:-|nuORF;ENST00000435954.2_1_6:54350035-54350290:-|nuORF	ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	MSMS	A375_MHC_IP_R2	2	539.6834106445312	2	539.763506	1077.51246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.868	1	65.606	65.106	66.106	0.73811								0	0	0	0.14804	1	24593	24593		21.537	4.5947	1				35555	1577	26086	26263	34568	34568					-0.02319699022086752
MAKKEVVRRQK	11	Unmodified	_MAKKEVVRRQK_					0	0	0			REV__ENST00000553756.1_1_14:24036504-24036892:-|nuORF	REV__ENST00000553756.1_1_14:24036504-24036892:-|nuORF	MSMS	A375_MHC_IP_R2	2	686.7303466796875	2	686.913913	1371.81327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.98	1	135.12	134.62	135.62	0.13901								0	0	0	0.16312	1	53088	53088		2.4985	1.0166	1		+		35556	23485	26087	26264	34569	34569					0.14223852419058858
MAKKGIQK	8	Unmodified	_MAKKGIQK_					0	0	0			REV__KCNK5|p.D303N|2|0.36|ENSG00000164626|chr6:39191483-39191483|C/T|missense_variant	REV__KCNK5|p.D303N|2|0.36|ENSG00000164626|chr6:39191483-39191483|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	452.33233642578125	2	452.275855	902.537157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.27	1	136.27	135.77	136.77	0								0	0	0	0.16876	1	52498	52498		2.3027	0	1		+		35557	20504	26088	26265	34570	34570					0.08199025641977187
MAKMNAQGNL	10	Unmodified	_MAKMNAQGNL_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-MSMS	A375_MHC_IP_R2	2	539.6878051757812	2	539.262619	1076.51068	-1.2344	-0.00066567	1.9027	0.001026	0.66826	0.00036037	539.2637113304473	59.678	0.30341	60.425	60.198	60.501	0.74714					7	5	2	0	0	0	0.6806	1	22572	22572		14.838	0.93222	1	762050			35558	9143	26089	26266	34571	34571					-0.02451031311670704
MALDYAGISI	10	Unmodified	_MALDYAGISI_					0	0	0		nc|ENSG00000163291|Q6TCH7-3|PAQR3;ENST00000512760.5_1_4:79841695-79860421:-|nuORF;nc|ENSG00000163291|Q6TCH7-2|PAQR3;ENSG00000163291|ENST00000512733|PAQR3	nc|ENSG00000163291|Q6TCH7-3|PAQR3	nc|ENSG00000163291|Q6TCH7-3|PAQR3	MULTI-SECPEP	A375_MHC_IP_R1	1	526.7105102539062	2	527.267893	1052.52123	-0.50729	-0.00026748	0.8558	0.00045124	0.34851	0.00018376	527.2681742314109	74.369	0.40633	74.369	74.095	74.502	0					13	7	3	0	0	0	0.78945	1	27074	27074		13.906	4.5586	1	1369900			35559	6643	26090	26267	34572	34572					-0.002927253855887102
MALDYAGISI	10	Unmodified	_MALDYAGISI_					0	0	0		nc|ENSG00000163291|Q6TCH7-3|PAQR3;ENST00000512760.5_1_4:79841695-79860421:-|nuORF;nc|ENSG00000163291|Q6TCH7-2|PAQR3;ENSG00000163291|ENST00000512733|PAQR3	nc|ENSG00000163291|Q6TCH7-3|PAQR3	nc|ENSG00000163291|Q6TCH7-3|PAQR3	MULTI-SECPEP	A375_MHC_IP_R2	2	526.7105102539062	2	527.267893	1052.52123	-0.42212	-0.00022257	-0.96146	-0.00050695	-1.3836	-0.00072951	527.2670144822532	73.61	0.40646	74.346	74.041	74.447	0.73541					13	7	2	0	0	0	0.72086	1	27932	27932		18.146	2.2992	1	1053800			35560	6643	26090	26267	34573	34573					-0.002927253855887102
MALNRYVAI	9	Unmodified	_MALNRYVAI_					0	0	0		OR13C8|p.D121N|1|0.14|ENSG00000186943|chr9:104569528-104569528|G/A|missense_variant	OR13C8|p.D121N|1|0.14|ENSG00000186943|chr9:104569528-104569528|G/A|missense_variant	OR13C8|p.D121N|1|0.14|ENSG00000186943|chr9:104569528-104569528|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	526.19140625	2	525.791869	1049.56919	-0.47395	-0.0002492	0.53188	0.00027966	0.05793	3.0459E-05	525.7923158688701	75.237	0.86008	75.237	74.502	75.362	0					19	16	2	0	0	0	0.65246	1	27444	27444		21.747	6.9084	1	1520700			35561	15062	26091	26268	34574	34574					0.04638393325103607
MAMCARPSL	9	Unmodified	_MAMCARPSL_					0	0	0			REV__ENSG00000175398|ENST00000309675|OR10P1	REV__ENSG00000175398|ENST00000309675|OR10P1	MULTI-MSMS	A375_MHC_IP_R1	1	490.70098876953125	2	490.229733	978.444913	-0.26711	-0.00013094	-3.2602	-0.0015982	-3.5273	-0.0017292	490.22943687136336	57.338	0.25589	57.338	57.159	57.415	0					8	4	2	0	0	0	0.38603	1	20541	20541		25.399	7.2643	1	975660	+		35562	21342	26092	26269	34575	34575					-0.04517143758232578
MANVLASSTP	10	Unmodified	_MANVLASSTP_					0	0	0			REV__ENST00000537175.1_1_12:16552809-16553013:-|nuORF	REV__ENST00000537175.1_1_12:16552809-16553013:-|nuORF	MSMS	A375_MHC_IP_R2	2	495.6521301269531	2	495.749867	989.485181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.565	1	54.316	53.816	54.816	0.75105								0	0	0	0.15207	1	20218	20218		13.906	1.3745	1		+		35563	25920	26093	26270	34576	34576					-0.009981825624549856
MAPFTDLFLI	10	Unmodified	_MAPFTDLFLI_					0	0	0		ENSG00000136546|ENST00000643258|SCN7A;SCN7A|p.I966Ffs*3|1|0.2|ENSG00000136546|chr2:166423394-166423394|A/-|frameshift_variant	ENSG00000136546|ENST00000643258|SCN7A	ENSG00000136546|ENST00000643258|SCN7A	MULTI-MSMS	A375_MHC_IP_R2	2	584.70849609375	2	584.309561	1166.60457	-0.26057	-0.00015225	-1.7428	-0.0010183	-2.0034	-0.0011706	584.3089145594632	137.89	0.3562	137.97	137.76	138.11	0.083969					9	6	2	0	0	0	0.51963	1	54122	54122		26.884	3.7352	1	2086100			35564	4799	26094	26271	34577	34577					0.027930110622492066
MAPPAHKSI	9	Unmodified	_MAPPAHKSI_					0	0	0		nc|ENSG00000108021|Q5VWN6-2|TASOR2;ENSG00000108021|ENST00000695737|TASOR2	nc|ENSG00000108021|Q5VWN6-2|TASOR2	nc|ENSG00000108021|Q5VWN6-2|TASOR2	MULTI-MSMS	A375_MHC_IP_R2	2	476.6575012207031	2	476.257662	950.500772	-0.52322	-0.00024919	0.085392	4.0669E-05	-0.43783	-0.00020852	476.2577516492048	27.63	0.81182	28.308	27.996	28.808	0.67857					26	15	2	0	0	0	0.44024	1	9530	9530		22.736	3.2973	1	2815900			35565	2779	26095	26272	34578	34578					0.023541487452462206
MAPPAHKSI	9	Unmodified	_MAPPAHKSI_					0	0	0		nc|ENSG00000108021|Q5VWN6-2|TASOR2;ENSG00000108021|ENST00000695737|TASOR2	nc|ENSG00000108021|Q5VWN6-2|TASOR2	nc|ENSG00000108021|Q5VWN6-2|TASOR2	MULTI-MATCH	A375_MHC_IP_R1	1		2	476.257662	950.500772	-0.59564	-0.00028368	0.28609	0.00013625	-0.30954	-0.00014742	476.2578238488318	28.219	0.90834	28.219	27.836	28.745	0	-0.044708	9.7108E-05	NaN	22.736	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2463600			35566	2779	26095	26272							0.023541487452462206
MAPQYILPP	9	Unmodified	_MAPQYILPP_					0	0	0			REV__ENST00000307790.7_3_22:30184749-30184881:-|nuORF	REV__ENST00000307790.7_3_22:30184749-30184881:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	516.6207885742188	2	515.275521	1028.53649	-0.68651	-0.00035374	-0.23145	-0.00011926	-0.91797	-0.00047301	515.2754303871588	92.577	1.1663	93.316	92.886	94.053	0.73902					60	22	5	0	0	0	0.55818	1	35276	35276		16.942	3.0362	1	49772000	+		35567	23478	26096	26273	34579	34579					0.02336186202251156
MAQAMRGLTL	10	Unmodified	_MAQAMRGLTL_					0	0	0		nc|ENSG829|Q9HDB9|ERVK-5_gag	nc|ENSG829|Q9HDB9|ERVK-5_gag	nc|ENSG829|Q9HDB9|ERVK-5_gag	MSMS	A375_MHC_IP_R1	1	546.1832885742188	2	546.288637	1090.56272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.574	1	62.574	62.074	63.074	0								0	0	0	0.14804	1	22602	22602		21.537	3.3906	1				35568	14969	26097	26274	34580	34580					0.02106132102085212
MASKGRYVSR	10	Unmodified	_MASKGRYVSR_					0	0	0		ENSG00000103888|ENST00000394685|CEMIP	ENSG00000103888|ENST00000394685|CEMIP	ENSG00000103888|ENST00000394685|CEMIP	MSMS	A375_MHC_IP_R2	2	385.58538818359375	3	385.54148	1153.60261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.989	1	23.619	23.119	24.119	0.63014								0	0	0	0.15382	1	7340	7340		8.4443	0	1				35569	2473	26098	26275	34581	34581					0.03195395097009168
MAVEPTQIQ	9	Unmodified	_MAVEPTQIQ_					0	0	0		nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD	nc|ENSG00000198947|P11532-4|DMD	nc|ENSG00000198947|P11532-4|DMD	MULTI-MSMS	A375_MHC_IP_R2	2	508.6923522949219	2	508.757692	1015.50083	-1.0653	-0.000542	-0.91655	-0.0004663	-1.9819	-0.0010083	508.75713191180523	57.497	0.60972	58.246	58.019	58.629	0.74894					15	11	2	0	0	0	0.38603	1	21705	21705		25.399	3.6527	1	1649900			35570	9381	26099	26276	34582	34582					-0.006298960453932523
MAVKWKRAFKK	11	Unmodified	_MAVKWKRAFKK_					0	0	0		ENST00000277141.10_2_9:88967948-88968005:-|nuORF	ENST00000277141.10_2_9:88967948-88968005:-|nuORF	ENST00000277141.10_2_9:88967948-88968005:-|nuORF	MSMS	A375_MHC_IP_R1	1	696.8189086914062	2	696.918467	1391.82238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.02	1	145.02	144.52	145.52	0								0	0	0	0.16353	1	55599	55599		0.35063	0.043601	1				35571	10409	26100	26277	34583	34583					0.14214245775337986
MCACACMCTC	10	Unmodified	_MCACACMCTC_					0	0	0		ENST00000544665.7_1_16:31343047-31343377:+|nuORF	ENST00000544665.7_1_16:31343047-31343377:+|nuORF	ENST00000544665.7_1_16:31343047-31343377:+|nuORF	MSMS	A375_MHC_IP_R2	2	520.220703125	2	520.136958	1038.25936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.03	1	121.47	120.97	121.97	0.44488								0	0	0	0.15642	1	46244	46244		0	0	1				35572	13315	26101	26278	34584	34584					-0.2582369692752309
MCCETPPTV	9	Unmodified	_MCCETPPTV_					0	0	0		nc|ENSG00000163806|Q5MJ70-1|SPDYA;ENST00000462832.5_1_2:29038880-29063343:+|nuORF;ENSG00000163806|ENST00000334056|SPDYA	nc|ENSG00000163806|Q5MJ70-1|SPDYA	nc|ENSG00000163806|Q5MJ70-1|SPDYA	MULTI-SECPEP	A375_MHC_IP_R2	2	489.9442443847656	2	490.697931	979.38131	-0.43545	-0.00021367	-0.3088	-0.00015153	-0.74425	-0.0003652	490.69763207916486	43.094	0.60786	43.866	43.623	44.231	0.7724					16	11	2	0	0	0	0.75466	1	16151	16151		12.532	8.2023	1	1811600			35573	6724	26102	26279	34585	34585					-0.10920548985984624
MCHCLFIYLFF	11	Unmodified	_MCHCLFIYLFF_					0	0	0		ENST00000496187.5_1_7:6863683-6865828:-|nuORF	ENST00000496187.5_1_7:6863683-6865828:-|nuORF	ENST00000496187.5_1_7:6863683-6865828:-|nuORF	MSMS	A375_MHC_IP_R1	1	479.4571533203125	3	479.556974	1435.64909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.369	1	22.369	21.869	22.869	0								0	0	0	0.16358	1	5998	5998		0.094841	0.011491	1				35574	12719	26103	26280	34586	34586					-0.05130624387584248
MCLAKWKSGY	10	Carbamidomethyl (C)	_MC(Carbamidomethyl (C))LAKWKSGY_	MC(1)LAKWKSGY		MC(46)LAKWKSGY		0	1	0		LYZ|p.E53K|1|0.2|ENSG00000090382|chr12:69350128-69350128|G/A|missense_variant	LYZ|p.E53K|1|0.2|ENSG00000090382|chr12:69350128-69350128|G/A|missense_variant	LYZ|p.E53K|1|0.2|ENSG00000090382|chr12:69350128-69350128|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	622.7008666992188	2	622.301744	1242.58893	-0.45333	-0.00028211	-0.52221	-0.00032497	-0.97554	-0.00060708	622.3013841164092	33.495	0.40701	33.495	33.241	33.648	0					16	7	3	0	0	0	0.51493	1	10944	10944		45.7	25.285	1	4371100			35575	14335	26104	26281	34587	34587	63				-0.022655987264442956
MCLAKWKSGY	10	Carbamidomethyl (C)	_MC(Carbamidomethyl (C))LAKWKSGY_	MC(1)LAKWKSGY		MC(46)LAKWKSGY		0	1	0		LYZ|p.E53K|1|0.2|ENSG00000090382|chr12:69350128-69350128|G/A|missense_variant	LYZ|p.E53K|1|0.2|ENSG00000090382|chr12:69350128-69350128|G/A|missense_variant	LYZ|p.E53K|1|0.2|ENSG00000090382|chr12:69350128-69350128|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	622.700927734375	2	622.301744	1242.58893	-0.80896	-0.00050342	0.051254	3.1895E-05	-0.75771	-0.00047152	622.3014530336604	32.762	0.40554	33.499	33.317	33.722	0.73691					20	7	4	0	0	0	0.2347	1	11718	11718		45.7	18.071	1	4463500			35576	14335	26104	26281	34588	34588	63				-0.022655987264442956
MCLRRESL	8	Unmodified	_MCLRRESL_					0	0	0			REV__ENST00000373302.7_1_9:130374692-130413896:+|nuORF	REV__ENST00000373302.7_1_9:130374692-130413896:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1814880371094	2	504.259879	1006.50521	-0.60761	-0.00030639	3.7704	0.0019012	3.1627	0.0015948	504.7614347029303	69.788	0.81494	70.522	70.284	71.099	0.73421					33	15	4	0	0	0	0.88903	1	26402	26402		24.021	0	1	3064900	+		35577	24089	26105	26282	34589	34589					0.002212898965012755
MCRQEWKF	8	Unmodified	_MCRQEWKF_					0	0	0		ENSG00000141552|ENST00000344877|ANAPC11;ENST00000573956.1_1_17:79857674-79857938:+|nuORF;ENST00000357385.7_1_17:79857297-79857938:+|nuORF	ENSG00000141552|ENST00000344877|ANAPC11	ENSG00000141552|ENST00000344877|ANAPC11	MSMS	A375_MHC_IP_R1	1	564.2159423828125	2	564.259879	1126.50521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.28	1	50.28	49.78	50.78	0								0	0	0	0.16876	1	17810	17810		8.5933	0.68312	1				35578	5253	26106	26283	34590	34590					-0.05298710103488702
MCSFLGANDVP	11	Unmodified	_MCSFLGANDVP_					0	0	0			REV__nc|ENSG00000114770|O15440-3|ABCC5;REV__ENSG00000114770|ENST00000334444|ABCC5	REV__ENSG00000114770|ENST00000334444|ABCC5	MULTI-MSMS	A375_MHC_IP_R2	2	577.6283569335938	2	577.254459	1152.49437	-0.16447	-9.4939E-05	3.6878	0.0021288	3.5233	0.0020338	577.7589347088747	74.09	0.81532	74.828	74.348	75.163	0.73752					25	15	3	0	0	0	0.72649	1	28046	28046		12.241	2.8575	1	2055100	+		35579	17841;27183	26107	26284	34591	34591					-0.07578157268426366
MCSYLSCCCC	10	Unmodified	_MCSYLSCCCC_					0	0	0			REV__ENST00000409158.5_1_2:131904864-131905029:+|nuORF	REV__ENST00000409158.5_1_2:131904864-131905029:+|nuORF	MSMS	A375_MHC_IP_R2	2	558.1921997070312	2	558.161487	1114.30842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.313	1	42.087	41.587	42.587	0.77451								0	0	0	0.15628	1	15324	15324		0.45834	0.45834	1		+		35580	24461	26108	26285	34592	34592					-0.24416085366920015
MCVFTDRCP	9	Unmodified	_MCVFTDRCP_					0	0	0		ENST00000452690.1_1_X:40145577-40145655:+|nuORF	ENST00000452690.1_1_X:40145577-40145655:+|nuORF	ENST00000452690.1_1_X:40145577-40145655:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	535.6663208007812	2	536.224648	1070.43474	-0.6715	-0.00036007	-0.06975	-3.7402E-05	-0.74125	-0.00039747	536.2245516636765	43.724	0.50415	44.493	44.228	44.732	0.7691					11	9	2	0	0	0	0.76827	1	16388	16388		10.824	4.6181	1	1073200			35581	12088	26109	26286	34593	34593					-0.09765751483450913
MDCPCNCDD	9	Unmodified	_MDCPCNCDD_					0	0	0			REV__ENST00000431629.5_2_7:114654517-114655986:+|nuORF	REV__ENST00000431629.5_2_7:114654517-114655986:+|nuORF	MSMS	A375_MHC_IP_R2	2	508.2184753417969	2	508.134838	1014.25512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.376	1	76.116	75.616	76.616	0.74052								0	0	0	0.15486	1	28612	28612		0.52476	0.066424	1		+		35582	18839	26110	26287	34594	34594					-0.25143423553583943
MDDEGDDDP	9	Unmodified	_MDDEGDDDP_					0	0	0		nc|ENSG00000113558|P63208-2|SKP1;ENSG00000113558|ENST00000353411|SKP1	nc|ENSG00000113558|P63208-2|SKP1	nc|ENSG00000113558|P63208-2|SKP1	MSMS	A375_MHC_IP_R1	1	504.7215576171875	2	504.658569	1007.30259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.44	1	149.44	148.94	149.94	0								0	0	0	0.15486	1	57033	57033		0	0	1				35583	3160	26111	26288	34595	34595					-0.20077406485734173
MDDRRLMY	8	Unmodified	_MDDRRLMY_					0	0	0		ENST00000478000.5_1_7:938560-944975:-|nuORF;nc|ENSG00000105963|O75689-3|ADAP1;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1	ENST00000478000.5_1_7:938560-944975:-|nuORF	ENST00000478000.5_1_7:938560-944975:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	549.6842651367188	2	550.254794	1098.49503	-1.052	-0.00057886	-2.7983	-0.0015398	-3.8503	-0.0021186	550.7553089890955	58.077	0.45477	58.826	58.629	59.083	0.74894					13	8	2	0	0	0	0.93661	1	21967	21967		21.747	2.4897	1	812180			35584	2653	26112	26289	34596	34596					-0.050273178287170595
MDEEEMDEED	10	Unmodified	_MDEEEMDEED_					0	0	0		ENST00000592005.5_1_18:44497857-44526095:+|nuORF	ENST00000592005.5_1_18:44497857-44526095:+|nuORF	ENST00000592005.5_1_18:44497857-44526095:+|nuORF	MSMS	A375_MHC_IP_R2	2	636.1141357421875	2	636.199941	1270.38533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.703	1	68.44	67.94	68.94	0.73631								0	0	0	0.15541	1	25655	25655		3.2813	0.54611	1				35585	13805	26113	26290	34597	34597					-0.2390487753987145
MDEHMRSML	9	Unmodified	_MDEHMRSML_					0	0	0		ENSG00000103994|ENST00000564754|ZNF106;nc|ENSG00000103994|Q9H2Y7-2|ZNF106;ZNF106|p.S482Pfs*33|1|0.38|ENSG00000103994|chr15:42450759-42450759|A/-|frameshift_variant	ENSG00000103994|ENST00000564754|ZNF106	ENSG00000103994|ENST00000564754|ZNF106	MSMS	A375_MHC_IP_R1	1	575.2027587890625	2	575.246111	1148.47767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.98	1	100.98	100.48	101.48	0								0	0	0	0.15486	1	37116	37116		11.64	1.4569	1				35586	2477	26114	26291	34598	34598					-0.09062981426018268
MDEPPPLDY	9	Unmodified	_MDEPPPLDY_					0	0	0		nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3	nc|ENSG00000170004|Q12873-3|CHD3	nc|ENSG00000170004|Q12873-3|CHD3	MSMS	A375_MHC_IP_R2	2	538.6735229492188	2	538.733883	1075.45321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.245	1	67.981	67.481	68.481	0.73631								0	0	0	0.15071	1	25473	25473		15.847	4.2069	1				35587	14761	26115	26292	34599	34599					-0.08149595036252322
MDEWWKQTLLS	11	Unmodified	_MDEWWKQTLLS_					0	0	0			REV__TRPM4|p.G682E|1|0.35|ENSG00000130529|chr19:49190233-49190233|G/A|missense_variant	REV__TRPM4|p.G682E|1|0.35|ENSG00000130529|chr19:49190233-49190233|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	479.6470642089844	3	479.567472	1435.68059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.17	1	52.922	52.422	53.422	0.75225								0	0	0	0.16182	1	19657	19657		9.2438	4.5279	1		+		35588	28913	26116	26293	34600	34600					-0.019826368282565454
MDGIMVHR	8	Unmodified	_MDGIMVHR_					0	0	0			REV__chr6:33285009-33286795|220|20.6|0.89|4.54|-|0|None,WDR46|1	REV__chr6:33285009-33286795|220|20.6|0.89|4.54|-|0|None,WDR46|1	MSMS	A375_MHC_IP_R1	1	479.6714172363281	2	479.733497	957.452441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.482	1	42.482	41.982	42.982	0								0	0	0	0.16876	1	14728	14728		18.135	2.2878	1		+		35589	15765	26117	26294	34601	34601					-0.02798668166292373
MDGSFDCDCGE	11	Unmodified	_MDGSFDCDCGE_					0	0	0		ENST00000558841.1_1_15:52312224-52338096:+|nuORF	ENST00000558841.1_1_15:52312224-52338096:+|nuORF	ENST00000558841.1_1_15:52312224-52338096:+|nuORF	MSMS	A375_MHC_IP_R2	2	589.7420654296875	2	589.675382	1177.33621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.09	1	132.28	131.78	132.78	0.18953								0	0	0	0.1636	1	51965	51965		0	0	1				35590	13475	26118	26295	34602	34602					-0.2453644430984241
MDIQLPVWKHK	11	Unmodified	_MDIQLPVWKHK_					0	0	0			REV__nc|ENSG00000155506|Q6PKG0-3|LARP1	REV__nc|ENSG00000155506|Q6PKG0-3|LARP1	MULTI-SECPEP	A375_MHC_IP_R1	1	698.3234252929688	2	697.88429	1393.75403	-0.5561	-0.0003881	-3.5662	-0.0024888	-4.1223	-0.0028769	698.383123954141	125.68	0.30153	125.68	125.55	125.85	0					6	5	2	0	0	0	0.92455	1	47857	47857		16.149	0.90062	1	8630300	+		35591	19924	26119	26296	34603	34603					0.07289956404838449
MDKVNSVDW	9	Unmodified	_MDKVNSVDW_					0	0	0			REV__tr|U7T505|U7T505_FUSNUBacterialsurfaceprotein26-residueOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00260PE=4SV=1	REV__tr|U7T505|U7T505_FUSNUBacterialsurfaceprotein26-residueOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00260PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	547.2000732421875	2	547.252774	1092.491	-0.80791	-0.00044213	-1.971	-0.0010786	-2.7789	-0.0015208	547.2516766198136	75.354	0.61228	76.095	75.875	76.487	0.74052					15	11	2	0	0	0	0.46465	2	28590	28590;28678		21.537	1.0834	1	1471600	+		35592	28813	26120	26297	34604;34605	34604					-0.05155084050784353
MDLIVLNCL	9	Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))DLIVLNC(Carbamidomethyl (C))L_	MDLIVLNC(1)L	M(1)DLIVLNCL	MDLIVLNC(64)L	M(64)DLIVLNCL	0	1	1			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MULTI-MSMS	A375_MHC_IP_R2	2	554.182861328125	2	553.782853	1105.55115	-0.89328	-0.00049468	0.77225	0.00042766	-0.12103	-6.7024E-05	553.7832622379594	27.039	0.56258	27.717	27.484	28.047	0.67857					33	10	5	0	0	0	0.050162	1	9182	9182		64.236	8.0593	1	17324000	+		35593	18629	26121	26298	34606	34606	76	477			0.0025989028811181925
MDLLASSEW	9	Unmodified	_MDLLASSEW_					0	0	0			REV__ENST00000300692.8_1_11:118210185-118211143:-|nuORF	REV__ENST00000300692.8_1_11:118210185-118211143:-|nuORF	MSMS	A375_MHC_IP_R1	1	526.1581420898438	2	526.241875	1050.4692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.056	1	99.056	98.556	99.556	0								0	0	0	0.1499	1	36390	36390		21.747	3.6117	1		+		35594	23415	26122	26299	34607	34607					-0.05401888799360677
MDLLASSEW	9	Unmodified	_MDLLASSEW_					0	0	0			REV__ENST00000300692.8_1_11:118210185-118211143:-|nuORF	REV__ENST00000300692.8_1_11:118210185-118211143:-|nuORF	MSMS	A375_MHC_IP_R2	2	526.1581420898438	2	526.241875	1050.4692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.229	1	98.989	98.489	99.489	0.75977								0	0	0	0.1499	1	37269	37269		21.747	3.6117	1		+		35595	23415	26122	26299	34608	34608					-0.05401888799360677
MDLNRSYF	8	Unmodified	_MDLNRSYF_					0	0	0		tr|U7SKG3|U7SKG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01983PE=4SV=1	tr|U7SKG3|U7SKG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01983PE=4SV=1	tr|U7SKG3|U7SKG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01983PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	522.6538696289062	2	523.242209	1044.46987	-0.42506	-0.00022241	0.18088	9.4644E-05	-0.24418	-0.00012777	523.2423896093236	84.947	0.51212	85.683	85.472	85.984	0.73602					17	9	2	0	0	0	0.95423	1	32256	32256		7.9102	2.6795	1	1422200			35596	29471	26123	26300	34609	34609					-0.05059049359670098
MDNQMKLEY	9	Unmodified	_MDNQMKLEY_					0	0	0		RELN|p.V948M|1|0.45|ENSG00000189056|chr7:103611664-103611664|C/T|missense_variant	RELN|p.V948M|1|0.45|ENSG00000189056|chr7:103611664-103611664|C/T|missense_variant	RELN|p.V948M|1|0.45|ENSG00000189056|chr7:103611664-103611664|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	586.1887817382812	2	586.259742	1170.50493	-0.25739	-0.0001509	-0.27826	-0.00016313	-0.53565	-0.00031403	586.2596076674872	24.995	0.71011	24.995	24.903	25.613	0					17	13	2	0	0	0	0.44024	1	7276	7276		22.736	7.4878	1	4657700			35597	15276	26124	26301	34610	34610					-0.07350174614020943
MDNQMKLEY	9	Unmodified	_MDNQMKLEY_					0	0	0		RELN|p.V948M|1|0.45|ENSG00000189056|chr7:103611664-103611664|C/T|missense_variant	RELN|p.V948M|1|0.45|ENSG00000189056|chr7:103611664-103611664|C/T|missense_variant	RELN|p.V948M|1|0.45|ENSG00000189056|chr7:103611664-103611664|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	586.188720703125	2	586.259742	1170.50493	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.55	1	25.194	24.694	25.694	0.64368								0	0	0	0.1493	1	8080	8080		22.736	3.4793	1				35598	15276	26124	26301	34611	34611					-0.07350174614020943
MDNWKQRLDLI	11	Unmodified	_MDNWKQRLDLI_					0	0	0			REV__nc|ENSG00000163492|Q6ZP82-1|CCDC141	REV__nc|ENSG00000163492|Q6ZP82-1|CCDC141	MULTI-SECPEP	A375_MHC_IP_R1	1	358.28411865234375	4	358.690781	1430.73402	-0.014312	-5.1334E-06	0.08878	3.1844E-05	0.074468	2.6711E-05	358.9416272051767	27.25	0.65703	27.25	27.078	27.735	0					16	12	2	0	0	0	0.99945	1	8173	8173		4.1166	3.75	1	1105000	+		35599	20369	26125	26302	34612	34612					0.03588160674257779
MDNWKQRLDLI	11	Unmodified	_MDNWKQRLDLI_					0	0	0			REV__nc|ENSG00000163492|Q6ZP82-1|CCDC141	REV__nc|ENSG00000163492|Q6ZP82-1|CCDC141	MULTI-MATCH	A375_MHC_IP_R2	2		4	358.690781	1430.73402	-0.57274	-0.00020544	-0.04888	-1.7533E-05	-0.62162	-0.00022297	358.9416227990383	26.598	0.3049	27.258	27.109	27.414	0.65992	0.0041049	-0.00014604	NaN	4.1166	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1267100	+		35600	20369	26125	26302							0.03588160674257779
MDREFRKWMKW	11	Unmodified	_MDREFRKWMKW_					0	0	0		nc|ENSG00000104885|Q8TEK3-1|DOT1L;ENSG00000104885|ENST00000398665|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	MULTI-SECPEP	A375_MHC_IP_R1	1	538.1459350585938	3	538.267362	1611.78026	-0.74644	-0.00040179	-2.5214	-0.0013572	-3.2679	-0.001759	538.2648882021138	46.601	0.35174	46.601	46.295	46.647	0					9	6	2	0	0	0	1.0013	1	16340	16340		0.32927	0.23443	1	1335400			35601	14521	26126	26303	34613	34613					-0.0011609769533151848
MDSAEQSHQLK	11	Unmodified	_MDSAEQSHQLK_					0	0	0		ENST00000359890.7_2_14:23370637-23370934:-|nuORF	ENST00000359890.7_2_14:23370637-23370934:-|nuORF	ENST00000359890.7_2_14:23370637-23370934:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1273.9898681640625	1	1273.58413	1272.57685	0.34817	0.00044343	3.8528	0.0049069	4.201	0.0053503	1274.5942982353279	109.34	0.71201	110.09	109.57	110.28	0.74684					23	13	3	0	0	0	0.99227	1	41227	41227		5.7319	0.43497	1	4838800			35602	11019	26127	26304	34614	34614					-0.04853543935928428
MDSDPQQDK	9	Unmodified	_MDSDPQQDK_					0	0	0			REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	A375_MHC_IP_R1	1	532.2129516601562	2	532.221671	1062.42879	-0.59763	-0.00031807	-1.3345	-0.00071025	-1.9321	-0.0010283	532.22065938835	104.31	0.20448	104.31	104.13	104.34	0					5	3	2	0	0	0	0.67332	1	38269	38269		9.3831	0	1	686110	+		35603	22186	26128	26305	34615	34615					-0.09992855189784677
MDSNILGKKKT	11	Unmodified	_MDSNILGKKKT_					0	0	0		ENST00000554360.5_1_14:58732774-58732990:-|nuORF	ENST00000554360.5_1_14:58732774-58732990:-|nuORF	ENST00000554360.5_1_14:58732774-58732990:-|nuORF	MSMS	A375_MHC_IP_R2	2	412.1563720703125	3	412.232312	1233.67511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.59	1	142.62	142.12	143.12	0.030731								0	0	0	0.16336	1	55741	55741		1.2148	0.14337	1				35604	13419	26129	26306	34616	34616					0.06761684379921462
MDTEHRLQT	9	Unmodified	_MDTEHRLQT_					0	0	0			REV__ENST00000578456.1_1_17:9820547-9830233:-|nuORF	REV__ENST00000578456.1_1_17:9820547-9830233:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1130.593017578125	1	1130.52588	1129.51861	0.39508	0.00044665	0.59078	0.00066789	0.98585	0.0011145	1131.5290508970502	115.98	0.91479	115.98	115.63	116.55	0					23	17	2	0	0	0	0.6898	1	42581	42581		7.9102	0	1	8733300	+		35605	16152	26130	26307	34617	34617					-0.040971807905634705
MDYPLQGP	8	Unmodified	_MDYPLQGP_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MSMS	A375_MHC_IP_R1	1	460.6479797363281	2	460.712753	919.410954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.402	1	42.402	41.902	42.902	0								0	0	0	0.16876	1	14695	14695		5.2307	0	1				35606	3161	26131	26308	34618	34618					-0.051975256539890324
MEADPELSKF	10	Unmodified	_MEADPELSKF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;nc|ENSG00000144028|O75643-2|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	A375_MHC_IP_R1	1	584.1737060546875	2	583.773539	1165.53253	-0.26806	-0.00015649	0.57612	0.00033633	0.30806	0.00017984	583.7738533802873	60.897	0.50713	60.897	60.669	61.176	0					13	9	2	0	0	0	0.084058	1	21954	21954		67.081	35.812	1	3697000			35607	5456	26132	26309	34619	34619					-0.0436194808212349
MEADPELSKF	10	Unmodified	_MEADPELSKF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;nc|ENSG00000144028|O75643-2|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-SECPEP	A375_MHC_IP_R2	2	584.1731567382812	2	583.773539	1165.53253	-0.75402	-0.00044018	0.18446	0.00010768	-0.56956	-0.0003325	583.7736327090186	60.202	0.50983	60.949	60.703	61.213	0.74638					12	9	2	0	0	0	0.57412	1	22789	22789		30.703	5.7125	1	3047000			35608	5456	26132	26309	34620	34620					-0.0436194808212349
MEADPELSKF	10	Oxidation (M)	_M(Oxidation (M))EADPELSKF_		M(1)EADPELSKF		M(57)EADPELSKF	0	0	1		ENSG00000144028|ENST00000323853|SNRNP200;nc|ENSG00000144028|O75643-2|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	A375_MHC_IP_R2	2	592.1707153320312	2	591.770997	1181.52744	-0.71931	-0.00042567	0.75404	0.00044622	0.03473	2.0552E-05	591.771389396101	48.996	0.76211	49.754	49.434	50.196	0.75737					18	14	2	0	0	0	0.13045	1	18377	18377		57.108	32.117	1	2871200			35609	5456	26132	26310	34621	34621		292			-0.056062519447550585
MEAIPVKQF	9	Unmodified	_MEAIPVKQF_					0	0	0		nc|ENSG00000144724|P23470-2|PTPRG;ENSG00000144724|ENST00000474889|PTPRG;ENST00000475012.5_1_3:62203523-62278979:+|nuORF;ENST00000468576.1_1_3:62229532-62248574:+|nuORF	nc|ENSG00000144724|P23470-2|PTPRG	nc|ENSG00000144724|P23470-2|PTPRG	MULTI-MSMS	A375_MHC_IP_R1	1	532.716064453125	2	531.786253	1061.55795	-0.71446	-0.00037994	0.69527	0.00036974	-0.01919	-1.0205E-05	531.7864401892309	65.262	1.3241	65.262	64.495	65.819	0					61	25	4	0	0	0	0.6656	1	23726	23726		10.074	3.3508	1	10232000			35610	5509	26133	26311	34622	34622					0.029635712309755036
MEAPAAGLF	9	Unmodified	_MEAPAAGLF_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	A375_MHC_IP_R1	1	454.1229248046875	2	453.723121	905.431689	-0.1589	-7.2095E-05	-1.1232	-0.00050964	-1.2821	-0.00058174	453.7230477741887	102.02	0.4061	102.02	101.75	102.15	0					14	7	3	0	0	0	0.17328	1	37516	37516		39.957	19.086	1	1510900			35611	6741	26134	26312	34623	34623					-0.024809352743204727
MEAPAAGLF	9	Unmodified	_MEAPAAGLF_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	A375_MHC_IP_R2	2	454.1231994628906	2	453.723121	905.431689	-0.1177	-5.3405E-05	0.20509	9.3054E-05	0.087385	3.9649E-05	453.72312942010274	101.26	0.45911	102.03	101.7	102.16	0.76428					18	8	3	0	0	0	0.17328	1	38356	38356		39.957	3.4912	1	2945900			35612	6741	26134	26312	34624	34624					-0.024809352743204727
MEAPAAGLF	9	Unmodified	_MEAPAAGLF_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	A375_MHC_IP_R2	2	906.8948974609375	1	906.438966	905.431689	-0.28082	-0.00025455	-0.39762	-0.00036042	-0.67844	-0.00061497	906.4389840802378	101.26	0.91794	102.02	101.6	102.51	0.76429					37	17	4	0	0	0	0.012712	1	38366	38366		92.822	43.153	1	13544000			35613	6741	26134	26312	34625	34625					-0.024809352743204727
MECCCCCCEE	10	Unmodified	_MECCCCCCEE_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R1	1	578.1784057617188	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.733	1	41.733	41.233	42.233	0								0	0	0	0.15629	1	14427	14427		0.40072	0.40072	1				35614	7535	26135	26313	34626	34626					-0.33701216240615395
MECCCCCCEE	10	Unmodified	_MECCCCCCEE_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R1	1	578.1776123046875	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.682	1	44.682	44.182	45.182	0								0	0	0	0.15642	1	15601	15601		0	0	1				35615	7535	26135	26313	34627	34627					-0.33701216240615395
MECCCCCCEE	10	Unmodified	_MECCCCCCEE_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R1	1	578.1503295898438	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.931	1	46.931	46.431	47.431	0								0	0	0	0.15642	1	16490	16490		0	0	1				35616	7535	26135	26313	34628	34628					-0.33701216240615395
MECCCCCCEE	10	Unmodified	_MECCCCCCEE_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R1	1	578.1822509765625	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.928	1	47.928	47.428	48.428	0								0	0	0	0.15642	1	16879	16879		0	0	1				35617	7535	26135	26313	34629	34629					-0.33701216240615395
MECCCCCCEE	10	Unmodified	_MECCCCCCEE_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R1	1	578.1502075195312	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.707	1	53.707	53.207	54.207	0								0	0	0	0.15642	1	19159	19159		0	0	1				35618	7535	26135	26313	34630	34630					-0.33701216240615395
MECCCCCCEE	10	Unmodified	_MECCCCCCEE_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R1	1	578.200927734375	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.514	1	54.514	54.014	55.014	0								0	0	0	0.15642	1	19468	19468		0	0	1				35619	7535	26135	26313	34631	34631					-0.33701216240615395
MECCCCCCEE	10	Unmodified	_MECCCCCCEE_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R1	1	578.1696166992188	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.103	1	56.103	55.603	56.603	0								0	0	0	0.15642	1	20090	20090		0	0	1				35620	7535	26135	26313	34632	34632					-0.33701216240615395
MECCCCCCEE	10	Unmodified	_MECCCCCCEE_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R1	1	578.1494140625	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.554	1	57.554	57.054	58.054	0								0	0	0	0.15642	1	20651	20651		0	0	1				35621	7535	26135	26313	34633	34633					-0.33701216240615395
MECCCCCCEE	10	Unmodified	_MECCCCCCEE_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R1	1	577.9564208984375	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.796	1	77.796	77.296	78.296	0								0	0	0	0.15642	1	28390	28390		0	0	1				35622	7535	26135	26313	34634	34634					-0.33701216240615395
MECCCCCCEE	10	Unmodified	_MECCCCCCEE_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R1	1	578.1729736328125	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.316	1	83.316	82.816	83.816	0								0	0	0	0.15642	1	30486	30486		0	0	1				35623	7535	26135	26313	34635	34635					-0.33701216240615395
MECCCCCCEE	10	Unmodified	_MECCCCCCEE_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R1	1	578.1903686523438	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.9	1	108.9	108.4	109.4	0								0	0	0	0.15642	1	39948	39948		0	0	1				35624	7535	26135	26313	34636	34636					-0.33701216240615395
MECCCCCCEE	10	Unmodified	_MECCCCCCEE_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R1	1	578.1559448242188	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.78	1	112.78	112.28	113.28	0								0	0	0	0.15642	1	41335	41335		0	0	1				35625	7535	26135	26313	34637	34637					-0.33701216240615395
MECCCCCCEE	10	Unmodified	_MECCCCCCEE_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R2	2	578.1966552734375	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.56	1	38.331	37.831	38.831	0.7709								0	0	0	0.15642	1	13753	13753		0	0	1				35626	7535	26135	26313	34638	34638					-0.33701216240615395
MECCCCCCEE	10	Unmodified	_MECCCCCCEE_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R2	2	578.1801147460938	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.812	1	38.587	38.087	39.087	0.77451								0	0	0	0.15642	1	13863	13863		0	0	1				35627	7535	26135	26313	34639	34639					-0.33701216240615395
MECCCCCCEE	10	Unmodified	_MECCCCCCEE_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R2	2	578.1776123046875	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.991	1	41.765	41.265	42.265	0.77451								0	0	0	0.15629	1	15197	15197		0.40072	0.40072	1				35628	7535	26135	26313	34640	34640					-0.33701216240615395
MECCCCCCEE	10	Unmodified	_MECCCCCCEE_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R2	2	578.177734375	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.899	1	44.668	44.168	45.168	0.7691								0	0	0	0.15642	1	16371	16371		0	0	1				35629	7535	26135	26313	34641	34641					-0.33701216240615395
MECCCCCCEE	10	Unmodified	_MECCCCCCEE_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R2	2	578.1505737304688	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.283	1	47.048	46.548	47.548	0.76519								0	0	0	0.15642	1	17329	17329		0	0	1				35630	7535	26135	26313	34642	34642					-0.33701216240615395
MECCCCCCEE	10	Unmodified	_MECCCCCCEE_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R2	2	578.0250244140625	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.78	1	94.525	94.025	95.025	0.74474								0	0	0	0.15642	1	35647	35647		0	0	1				35631	7535	26135	26313	34643	34643					-0.33701216240615395
MECCCCCCEE	10	Unmodified	_MECCCCCCEE_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MSMS	A375_MHC_IP_R2	2	578.1886596679688	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.9	1	105.66	105.16	106.16	0.76308								0	0	0	0.15642	1	39681	39681		0	0	1				35632	7535	26135	26313	34644	34644					-0.33701216240615395
MECFGDNCY	9	Unmodified	_MECFGDNCY_					0	0	0			REV__ENSG00000184611|ENST00000332142|KCNH7	REV__ENSG00000184611|ENST00000332142|KCNH7	MULTI-MSMS	A375_MHC_IP_R2	2	361.5190734863281	3	361.118972	1080.33509	-0.59795	-0.00021593	1.6812	0.00060711	1.0833	0.00039118	361.1196924604642	59.11	0.50746	59.857	59.59	60.098	0.74714					16	9	2	0	0	0	0.75251	1	22413	22413		1.1933	0	1	1341900	+		35633	21827	26136	26314	34645	34645					-0.2018661388806322
MECFGDNCY	9	Unmodified	_MECFGDNCY_					0	0	0			REV__ENSG00000184611|ENST00000332142|KCNH7	REV__ENSG00000184611|ENST00000332142|KCNH7	MULTI-MATCH	A375_MHC_IP_R1	1		3	361.118972	1080.33509	0.17817	6.434E-05	1.3254	0.00047863	1.5036	0.00054297	361.1196110977931	59.698	0.50803	59.698	59.397	59.905	0	-0.079888	-0.00019972	NaN	1.1933	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1388500	+		35634	21827	26136	26314							-0.2018661388806322
MECFGDNCY	9	Unmodified	_MECFGDNCY_					0	0	0			REV__ENSG00000184611|ENST00000332142|KCNH7	REV__ENSG00000184611|ENST00000332142|KCNH7	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	361.118972	1080.33509	-0.59795	-0.00021593	1.6812	0.00060711	1.0833	0.00039118	361.1196924604642	59.11	0.50746	59.857	59.59	60.098	0.74714	0.079888	0.00018574	NaN	1.1933	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1341900	+		35635	21827	26136	26314							-0.2018661388806322
MECFQLFN	8	Unmodified	_MECFQLFN_					0	0	0			REV__MITD1|p.R136Q|1|0.16|ENSG00000158411|chr2:99171413-99171413|C/T|missense_variant	REV__MITD1|p.R136Q|1|0.16|ENSG00000158411|chr2:99171413-99171413|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	516.2095336914062	2	516.219888	1030.42522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.726	1	70.461	69.961	70.961	0.73421								0	0	0	0.16876	1	26426	26426		5.2307	0	1		+		35636	27016	26137	26315	34646	34646					-0.08877196497337536
MECRHRDSL	9	Unmodified	_MECRHRDSL_					0	0	0			REV__ENSG00000273820|ENST00000621775|USP27X	REV__ENSG00000273820|ENST00000621775|USP27X	MULTI-MSMS	A375_MHC_IP_R1	1	573.674072265625	2	573.760775	1145.507	-0.21867	-0.00012546	-0.68447	-0.00039272	-0.90314	-0.00051818	574.2619773288883	60.247	0.60952	60.247	59.905	60.514	0					29	11	4	0	0	0	0.27715	1	21748	21748		32.305	1.602	1	5469300	+		35637	18303	26138	26316	34647	34647					-0.059937010855264816
MEDDDMDY	8	Unmodified	_MEDDDMDY_					0	0	0			REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	A375_MHC_IP_R1	1	517.164306640625	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.45	1	19.45	18.95	19.95	0								0	0	0	0.16876	1	4829	4829		0.79363	0	1		+		35638	17937	26139	26317	34648	34648					-0.20963274352425287
MEDDDMDY	8	Unmodified	_MEDDDMDY_					0	0	0			REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	A375_MHC_IP_R1	1	517.1768798828125	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.546	1	42.546	42.046	43.046	0								0	0	0	0.16876	1	14748	14748		0.79363	0	1		+		35639	17937	26139	26317	34649	34649					-0.20963274352425287
MEDDDMDY	8	Unmodified	_MEDDDMDY_					0	0	0			REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	A375_MHC_IP_R1	1	517.1990356445312	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.651	1	42.651	42.151	43.151	0								0	0	0	0.16876	1	14789	14789		0.79363	0	1		+		35640	17937	26139	26317	34650	34650					-0.20963274352425287
MEDDDMDY	8	Unmodified	_MEDDDMDY_					0	0	0			REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	A375_MHC_IP_R1	1	517.1636962890625	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.728	1	60.728	60.228	61.228	0								0	0	0	0.16876	1	21869	21869		0.79363	0	1		+		35641	17937	26139	26317	34651	34651					-0.20963274352425287
MEDDDMDY	8	Unmodified	_MEDDDMDY_					0	0	0			REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	A375_MHC_IP_R1	1	517.1801147460938	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.758	1	60.758	60.258	61.258	0								0	0	0	0.16876	1	21880	21880		0.79363	0	1		+		35642	17937	26139	26317	34652	34652					-0.20963274352425287
MEDDDMDY	8	Unmodified	_MEDDDMDY_					0	0	0			REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	A375_MHC_IP_R1	1	517.1473999023438	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.267	1	76.267	75.767	76.767	0								0	0	0	0.16876	1	27797	27797		0.79363	0	1		+		35643	17937	26139	26317	34653	34653					-0.20963274352425287
MEDDDMDY	8	Unmodified	_MEDDDMDY_					0	0	0			REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	A375_MHC_IP_R1	1	517.2132568359375	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.951	1	78.951	78.451	79.451	0								0	0	0	0.16876	1	28816	28816		0.79363	0	1		+		35644	17937	26139	26317	34654	34654					-0.20963274352425287
MEDDDMDY	8	Unmodified	_MEDDDMDY_					0	0	0			REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	A375_MHC_IP_R1	1	517.15576171875	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.92	1	82.92	82.42	83.42	0								0	0	0	0.16876	1	30332	30332		0.79363	0	1		+		35645	17937	26139	26317	34655	34655					-0.20963274352425287
MEDDDMDY	8	Unmodified	_MEDDDMDY_					0	0	0			REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	A375_MHC_IP_R1	1	517.11669921875	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.173	1	86.173	85.673	86.673	0								0	0	0	0.16876	1	31592	31592		2.5775	0	1		+		35646	17937	26139	26317	34656	34656					-0.20963274352425287
MEDDDMDY	8	Unmodified	_MEDDDMDY_					0	0	0			REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	A375_MHC_IP_R2	2	517.176513671875	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.817	1	42.592	42.092	43.092	0.77451								0	0	0	0.16876	1	15533	15533		0.79363	0	1		+		35647	17937	26139	26317	34657	34657					-0.20963274352425287
MEDDDMDY	8	Unmodified	_MEDDDMDY_					0	0	0			REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	A375_MHC_IP_R2	2	517.1495971679688	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.841	1	49.599	49.099	50.099	0.75737								0	0	0	0.16876	1	18343	18343		0.79363	0	1		+		35648	17937	26139	26317	34658	34658					-0.20963274352425287
MEDDDMDY	8	Unmodified	_MEDDDMDY_					0	0	0			REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	A375_MHC_IP_R2	2	517.1163330078125	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.394	1	86.13	85.63	86.63	0.73601								0	0	0	0.16876	1	32464	32464		5.2307	0	1		+		35649	17937	26139	26317	34659	34659					-0.20963274352425287
MEDDDMDY	8	Unmodified	_MEDDDMDY_					0	0	0			REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	A375_MHC_IP_R2	2	517.1575927734375	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.55	1	101.31	100.81	101.81	0.76278								0	0	0	0.16876	1	38124	38124		0.79363	0	1		+		35650	17937	26139	26317	34660	34660					-0.20963274352425287
MEDEVQRRL	9	Unmodified	_MEDEVQRRL_					0	0	0		ENSG00000179115|ENST00000314606|FARSA;nc|ENSG00000179115|Q9Y285-2|FARSA;ENST00000592662.5_1_19:13039347-13044510:-|nuORF	ENSG00000179115|ENST00000314606|FARSA	ENSG00000179115|ENST00000314606|FARSA	MULTI-SECPEP	A375_MHC_IP_R1	1	392.9715881347656	3	392.532762	1174.57646	-0.21499	-8.439E-05	0.012618	4.9528E-06	-0.20237	-7.9437E-05	392.5327344997372	26.147	0.70927	26.147	25.917	26.626	0					32	13	4	0	0	0	0.76642	1	7846	7846		12.873	7.0892	1	17062000			35651	8205	26140	26318	34661	34661					-0.0038491886512019846
MEDEVQRRL	9	Unmodified	_MEDEVQRRL_					0	0	0		ENSG00000179115|ENST00000314606|FARSA;nc|ENSG00000179115|Q9Y285-2|FARSA;ENST00000592662.5_1_19:13039347-13044510:-|nuORF	ENSG00000179115|ENST00000314606|FARSA	ENSG00000179115|ENST00000314606|FARSA	MULTI-SECPEP	A375_MHC_IP_R2	2	392.9325256347656	3	392.532762	1174.57646	-0.64086	-0.00025156	0.26338	0.00010339	-0.37748	-0.00014817	392.53288711143165	25.561	0.71224	26.221	25.941	26.653	0.65992					31	13	4	0	0	0	0.39273	1	8546	8546		37.075	12.193	1	21332000			35652	8205	26140	26318	34662	34662					-0.0038491886512019846
MEDEVQRRL	9	Oxidation (M)	_M(Oxidation (M))EDEVQRRL_		M(1)EDEVQRRL		M(44)EDEVQRRL	0	0	1		ENSG00000179115|ENST00000314606|FARSA;nc|ENSG00000179115|Q9Y285-2|FARSA;ENST00000592662.5_1_19:13039347-13044510:-|nuORF	ENSG00000179115|ENST00000314606|FARSA	ENSG00000179115|ENST00000314606|FARSA	MULTI-MSMS	A375_MHC_IP_R2	2	398.2643737792969	3	397.8644	1190.57137	-0.43454	-0.00017289	0.066312	2.6383E-05	-0.36822	-0.0001465	397.8644923687399	22.661	1.122	23.291	22.907	24.029	0.63014					42	21	3	0	0	0	0.13728	1	7198	7198		43.982	22.392	1	12060000			35653	8205	26140	26319	34663	34663		399			-0.016292227277517668
MEDEVQRRL	9	Oxidation (M)	_M(Oxidation (M))EDEVQRRL_		M(1)EDEVQRRL		M(44)EDEVQRRL	0	0	1		ENSG00000179115|ENST00000314606|FARSA;nc|ENSG00000179115|Q9Y285-2|FARSA;ENST00000592662.5_1_19:13039347-13044510:-|nuORF	ENSG00000179115|ENST00000314606|FARSA	ENSG00000179115|ENST00000314606|FARSA	MULTI-SECPEP	A375_MHC_IP_R2	2	398.2642822265625	3	397.8644	1190.57137	-0.39604	-0.00015757	-0.48366	-0.00019243	-0.8797	-0.00035	397.86443517080704	19.894	0.70835	20.505	20.095	20.803	0.61029					47	13	5	0	0	0	0.30133	1	6081	6081		43.982	14.545	1	12538000			35654	8205	26140	26319	34664	34664		399			-0.016292227277517668
MEDSQPSGQV	10	Unmodified	_MEDSQPSGQV_					0	0	0		ENSG00000178409|ENST00000369042|BEND3	ENSG00000178409|ENST00000369042|BEND3	ENSG00000178409|ENST00000369042|BEND3	MSMS	A375_MHC_IP_R1	1	539.220947265625	2	539.229496	1076.44444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.341	1	88.341	87.841	88.841	0								0	0	0	0.15451	1	32428	32428		6.2058	1.4498	1				35655	8159	26141	26320	34665	34665					-0.09072568672741
MEEDDEDDEM	10	Unmodified	_MEEDDEDDEM_					0	0	0			REV__ENSG00000141449|ENST00000424526|GREB1L	REV__ENSG00000141449|ENST00000424526|GREB1L	MSMS	A375_MHC_IP_R2	2	629.5908813476562	2	629.192116	1256.36968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.987	1	18.59	18.09	19.09	0.60308								0	0	0	0.15642	1	5324	5324		0	0	1		+		35656	19268	26142	26321	34666	34666					-0.24825164056960602
MEEEIPKNY	9	Unmodified	_MEEEIPKNY_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.T2707Mfs*5|1|0.21|ENSG00000196367|chr7:98976664-98976688|CGCTGATGTTGGAGCACCAGGCTTT/-|frameshift_variant;TRRAP|p.I1891Sfs*37|1|0.32|ENSG00000196367|chr7:98953393-98953393|T/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	A375_MHC_IP_R1	1	576.6881713867188	2	576.765714	1151.51688	-0.14875	-8.5793E-05	0.33484	0.00019313	0.18609	0.00010733	577.267416225564	40.279	0.20322	40.279	40.203	40.406	0					6	3	2	0	0	0	0.16595	1	13845	13845		45.74	25.325	1	1293200			35657	9031	26143	26322	34667	34667					-0.05282234599167168
MEEEIPKNY	9	Unmodified	_MEEEIPKNY_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.T2707Mfs*5|1|0.21|ENSG00000196367|chr7:98976664-98976688|CGCTGATGTTGGAGCACCAGGCTTT/-|frameshift_variant;TRRAP|p.I1891Sfs*37|1|0.32|ENSG00000196367|chr7:98953393-98953393|T/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	A375_MHC_IP_R2	2	576.6880493164062	2	576.765714	1151.51688	-0.20077	-0.0001158	-0.46943	-0.00027075	-0.67021	-0.00038655	576.7652720912226	39.724	0.306	40.499	40.32	40.626	0.77451					9	5	2	0	0	0	0.29123	1	14645	14645		31.268	10.854	1	1524400			35658	9031	26143	26322	34668	34668					-0.05282234599167168
MEEGNPRLW	9	Unmodified	_MEEGNPRLW_					0	0	0		ENSG00000132824|ENST00000342374|SERINC3;nc|ENSG00000132824|Q13530-2|SERINC3	ENSG00000132824|ENST00000342374|SERINC3	ENSG00000132824|ENST00000342374|SERINC3	MULTI-SECPEP	A375_MHC_IP_R1	1	566.666259765625	2	566.266216	1130.51788	-0.42725	-0.00024194	-0.1283	-7.2654E-05	-0.55555	-0.00031459	566.2661256874436	59.067	0.81441	59.067	58.582	59.397	0					21	15	2	0	0	0	0.41731	1	21249	21249		45.7	18.071	1	2484900			35659	4454	26144	26323	34669	34669					-0.04215975439592512
MEEGNPRLW	9	Unmodified	_MEEGNPRLW_					0	0	0		ENSG00000132824|ENST00000342374|SERINC3;nc|ENSG00000132824|Q13530-2|SERINC3	ENSG00000132824|ENST00000342374|SERINC3	ENSG00000132824|ENST00000342374|SERINC3	MULTI-SECPEP	A375_MHC_IP_R2	2	566.6661376953125	2	566.266216	1130.51788	-0.70683	-0.00040025	-0.5203	-0.00029463	-1.2271	-0.00069488	566.2661461292471	58.335	0.71082	59.084	58.729	59.44	0.74894					26	13	3	0	0	0	0.25548	1	22069	22069		53.404	40.362	1	2433700			35660	4454	26144	26323	34670	34670					-0.04215975439592512
MEELHMLLR	9	Unmodified	_MEELHMLLR_					0	0	0			REV__ENST00000600274.5_1_19:42396347-42410935:+|nuORF	REV__ENST00000600274.5_1_19:42396347-42410935:+|nuORF	MSMS	A375_MHC_IP_R1	1	391.23333740234375	3	391.203588	1170.58893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.449	1	18.449	17.949	18.949	0								0	0	0	0.15486	1	4405	4405		0.26902	0	1		+		35661	16683	26145	26324	34671	34671					0.010464012735610595
MEELHMLLR	9	Unmodified	_MEELHMLLR_					0	0	0			REV__ENST00000600274.5_1_19:42396347-42410935:+|nuORF	REV__ENST00000600274.5_1_19:42396347-42410935:+|nuORF	MSMS	A375_MHC_IP_R1	1	391.2333679199219	3	391.203588	1170.58893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.96	1	18.96	18.46	19.46	0								0	0	0	0.15486	1	4559	4559		0.26902	0	1		+		35662	16683	26145	26324	34672	34672					0.010464012735610595
MEEPISLHTW	10	Unmodified	_MEEPISLHTW_					0	0	0		ENST00000318410.11_1_8:126096196-126103965:-|nuORF	ENST00000318410.11_1_8:126096196-126103965:-|nuORF	ENST00000318410.11_1_8:126096196-126103965:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	621.713134765625	2	621.794806	1241.57506	-0.61857	-0.00038462	1.3351	0.00083015	0.71651	0.00044552	621.7956018519291	84.695	0.30151	85.431	85.222	85.523	0.73601					9	5	2	0	0	0	0.56504	1	32167	32167		41.84	24.897	1	1208900			35663	10672	26146	26325	34673	34673					-0.03606552953874598
MEEPKGYYW	9	Unmodified	_MEEPKGYYW_					0	0	0		nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	MSMS	A375_MHC_IP_R1	1	601.6954345703125	2	601.762975	1201.5114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.293	1	65.293	64.793	65.793	0								0	0	0	0.15142	1	23636	23636		19.257	5.7491	1				35664	3085	26147	26326	34674	34674					-0.08129913390985166
MEEPVLLTW	9	Unmodified	_MEEPVLLTW_					0	0	0			REV__nc|ENSG00000183378|Q7RTZ1|OVCH2	REV__nc|ENSG00000183378|Q7RTZ1|OVCH2	MULTI-SECPEP	A375_MHC_IP_R1	1	558.7083129882812	2	559.283543	1116.55253	-0.48135	-0.00026921	-1.2501	-0.00069918	-1.7315	-0.00096839	559.7835998536958	60.072	1.0173	60.072	59.548	60.566	0					46	19	5	0	0	0	0.67483	1	21641	21641		20.454	8.9589	1	2413100	+		35665	21753	26148	26327	34675	34675					-0.0010815235150403169
MEEQDEMPSQ	10	Unmodified	_MEEQDEMPSQ_					0	0	0			REV__PALLD|p.G228E|1|0.22|ENSG00000129116|chr4:168512187-168512187|G/A|missense_variant	REV__PALLD|p.G228E|1|0.22|ENSG00000129116|chr4:168512187-168512187|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	612.0686645507812	2	612.231378	1222.4482	-0.27385	-0.00016766	0.015608	9.5557E-06	-0.25825	-0.00015811	612.2309084801198	99.657	0.45683	100.42	100.22	100.68	0.76278					11	8	2	0	0	0	0.88918	1	37864	37864		13.042	1.5478	1	1193300	+		35666	27710	26149	26328	34676	34676					-0.15412266961175192
MEETIYQNY	9	Unmodified	_MEETIYQNY_					0	0	0		ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2;ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000474964.5_1_3:127323572-127340613:+|nuORF	ENST00000474964.5_1_3:127323572-127340613:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	596.1555786132812	2	595.755346	1189.49614	-0.45582	-0.00027156	0.8964	0.00053403	0.44057	0.00026247	595.7556605363969	64.767	0.40825	64.767	64.546	64.954	0					11	7	2	0	0	0	0.16676	1	23452	23452		41.84	32.457	1	1516200			35667	1558	26150	26329	34677	34677					-0.09102824978822355
MEFALDLFPV	10	Unmodified	_MEFALDLFPV_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	A375_MHC_IP_R2	2	393.92779541015625	3	394.535221	1180.58383	-0.49303	-0.00019452	-0.7597	-0.00029973	-1.2527	-0.00049425	394.5349940130796	21.352	0.65977	21.971	21.625	22.285	0.61932					14	12	2	0	0	0	0.92957	1	6607	6607		3.3196	1.9901	1	3059700	+		35668	21583	26151	26330	34678	34678					0.0007642068255790946
MEFERQAEI	9	Oxidation (M)	_M(Oxidation (M))EFERQAEI_		M(1)EFERQAEI		M(41)EFERQAEI	0	0	1		ENSG00000130724|ENST00000312547|CHMP2A	ENSG00000130724|ENST00000312547|CHMP2A	ENSG00000130724|ENST00000312547|CHMP2A	MULTI-MSMS	A375_MHC_IP_R2	2	585.16845703125	2	584.768788	1167.52302	-1.1375	-0.00066517	1.1689	0.00068352	0.031388	1.8355E-05	584.7694473909735	37.021	0.45584	37.792	37.461	37.917	0.7709					11	8	2	0	0	0	0.16286	1	13562	13562		40.725	22.579	1	2807400			35669	4271	26152	26331	34679	34679		220			-0.05403716367641209
MEFLKGSGDY	10	Oxidation (M)	_M(Oxidation (M))EFLKGSGDY_		M(1)EFLKGSGDY		M(120)EFLKGSGDY	0	0	1		ENST00000470661.1_1_6:64237905-64286433:+|nuORF	ENST00000470661.1_1_6:64237905-64286433:+|nuORF	ENST00000470661.1_1_6:64237905-64286433:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	582.1578369140625	2	581.757889	1161.50123	-0.19585	-0.00011394	0.13622	7.925E-05	-0.059623	-3.4686E-05	581.7579872107905	43.698	0.45831	43.698	43.451	43.909	0					15	8	2	0	0	0	0.011634	1	15197	15197		115.06	80.957	1	3937200			35670	12341	26153	26332	34680	34680		460			-0.07306521116197473
MEFLKGSGDY	10	Unmodified	_MEFLKGSGDY_					0	0	0		ENST00000470661.1_1_6:64237905-64286433:+|nuORF	ENST00000470661.1_1_6:64237905-64286433:+|nuORF	ENST00000470661.1_1_6:64237905-64286433:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	574.703857421875	2	573.760432	1145.50631	-0.21867	-0.00012546	-0.087116	-4.9983E-05	-0.30578	-0.00017545	574.2619773288883	60.247	0.60952	60.247	59.905	60.514	0					29	11	4	0	0	0	0.56097	1	21749	21749		23.79	4.5328	1	5469300			35671	12341	26153	26333	34681	34681					-0.06062217253588642
MEFLKGSGDY	10	Unmodified	_MEFLKGSGDY_					0	0	0		ENST00000470661.1_1_6:64237905-64286433:+|nuORF	ENST00000470661.1_1_6:64237905-64286433:+|nuORF	ENST00000470661.1_1_6:64237905-64286433:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	573.6738891601562	2	573.760432	1145.50631	-0.624	-0.00035802	0.062219	3.5699E-05	-0.56178	-0.00032233	573.7605159282338	59.491	0.7078	60.238	59.845	60.553	0.74714					26	13	3	0	0	0	0.028893	2	22543	22488;22543		81.915	41.958	1	5511300			35672	12341	26153	26333	34682;34683	34683					-0.06062217253588642
MEFLKGSGDY	10	Unmodified	_MEFLKGSGDY_					0	0	0		ENST00000470661.1_1_6:64237905-64286433:+|nuORF	ENST00000470661.1_1_6:64237905-64286433:+|nuORF	ENST00000470661.1_1_6:64237905-64286433:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	573.760432	1145.50631	-0.21867	-0.00012546	-0.087116	-4.9983E-05	-0.30578	-0.00017545	574.2619773288883	60.247	0.60952	60.247	59.905	60.514	0	0.0047694	-7.4234E-05	NaN	81.915	29	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5469300			35673	12341	26153	26333							-0.06062217253588642
MEFPTMIDY	9	Unmodified	_MEFPTMIDY_					0	0	0			REV__nc|ENSG00000198363|Q12797-7|ASPH	REV__nc|ENSG00000198363|Q12797-7|ASPH	MULTI-MSMS	A375_MHC_IP_R1	1	573.6836547851562	2	573.745936	1145.47732	-0.22271	-0.00012778	-3.9116	-0.0022442	-4.1343	-0.002372	574.242831676799	60.236	0.25452	60.236	60.159	60.414	0					5	4	2	0	0	0	0.64808	1	21662	21662		11.64	0.81637	1	493920	+		35674	27447	26154	26334	34684	34684					-0.0896007787423514
MEGDKLILLY	10	Unmodified	_MEGDKLILLY_					0	0	0		ENST00000318948.6_1_21:16340594-16340633:-|nuORF	ENST00000318948.6_1_21:16340594-16340633:-|nuORF	ENST00000318948.6_1_21:16340594-16340633:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	598.226318359375	2	597.825575	1193.6366	-0.37328	-0.00022316	0.15491	9.2609E-05	-0.21837	-0.00013055	597.825734601375	104.11	0.61089	104.11	103.83	104.44	0					27	11	3	0	0	0	0.70912	1	38202	38202		42.312	16.913	1	4888300			35675	10678	26155	26335	34685	34685					0.04752378745411079
MEIAQTQKG	9	Unmodified	_MEIAQTQKG_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MSMS	A375_MHC_IP_R1	1	503.1921691894531	2	503.255317	1004.49608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.921	1	77.921	77.421	78.421	0								0	0	0	0.1521	1	28439	28439		18.146	1.2041	1				35676	1208	26156	26336	34686	34686					-0.005987801881701671
MEIDIPHVW	9	Oxidation (M)	_M(Oxidation (M))EIDIPHVW_		M(1)EIDIPHVW		M(61)EIDIPHVW	0	0	1		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046395-184046545:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	A375_MHC_IP_R1	1	578.8138427734375	2	578.278792	1154.54303	-0.19821	-0.00011462	-0.42737	-0.00024714	-0.62558	-0.00036176	578.2784853089739	99.412	0.60671	99.412	99.067	99.673	0					21	11	3	0	0	0	0.05754	1	36550	36550		61.357	42.1	1	3023000			35677	3254	26157	26337	34687	34687		155			-0.028059206370244283
MEIDIPHVW	9	Oxidation (M)	_M(Oxidation (M))EIDIPHVW_		M(1)EIDIPHVW		M(89)EIDIPHVW	0	0	1		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046395-184046545:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MSMS	A375_MHC_IP_R2	2	578.238037109375	2	578.278792	1154.54303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.7	1	99.459	98.959	99.959	0.75977								0	0	0	0.01665	1	37441	37441		88.904	61.275	1				35678	3254	26157	26337	34688	34688		155			-0.028059206370244283
MEIDIPHVW	9	Unmodified	_MEIDIPHVW_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046395-184046545:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	A375_MHC_IP_R1	1	570.6809692382812	2	570.281334	1138.54812	0.044835	2.5569E-05	0.12204	6.96E-05	0.16688	9.5169E-05	570.2812942099306	116.08	0.61013	116.08	115.68	116.29	0					31	11	3	0	0	0	0.012712	2	42518	42518;42536		92.822	73.565	1	9369400			35679	3254	26157	26338	34689;34690	34689					-0.0156161677439286
MEIDIPHVW	9	Unmodified	_MEIDIPHVW_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046395-184046545:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	A375_MHC_IP_R2	2	570.6803588867188	2	570.281334	1138.54812	-0.12482	-7.1181E-05	-0.70253	-0.00040064	-0.82735	-0.00047182	570.2808677796443	115.26	0.86427	115.95	115.52	116.39	0.68999					32	16	3	0	0	0	0.018481	1	43400	43400		85.357	63.61	1	10542000			35680	3254	26157	26338	34691	34691					-0.0156161677439286
MEIDIPHVWL	10	Unmodified	_MEIDIPHVWL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046395-184046545:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	A375_MHC_IP_R1	1	627.224853515625	2	626.823366	1251.63218	-0.2626	-0.00016461	2.4252	0.0015201	2.1626	0.0013555	626.824918122669	127.65	0.35437	127.65	127.42	127.77	0					8	6	2	0	0	0	0.26783	1	48988	48988		49.933	36.891	1	9103300			35681	3254	26158	26339	34692	34692					0.016429143224968357
MEIFISGFPL	10	Unmodified	_MEIFISGFPL_					0	0	0			REV__ENSG00000077147|ENST00000371142|TM9SF3	REV__ENSG00000077147|ENST00000371142|TM9SF3	MULTI-SECPEP	A375_MHC_IP_R2	2	577.205078125	2	577.301736	1152.58892	-0.21511	-0.00012418	-0.50675	-0.00029255	-0.72186	-0.00041673	577.301224831626	45.359	0.30484	46.124	45.947	46.252	0.76519					7	5	2	0	0	0	0.91556	1	16945	16945		10.074	3.8681	1	2798300	+		35682	16689	26159	26340	34693	34693					0.018727245452055286
MEKFWNKFL	9	Unmodified	_MEKFWNKFL_					0	0	0		nc|ENSG00000165264|O95139-2|NDUFB6;ENSG00000165264|ENST00000379847|NDUFB6	nc|ENSG00000165264|O95139-2|NDUFB6	nc|ENSG00000165264|O95139-2|NDUFB6	MULTI-MSMS	A375_MHC_IP_R2	2	1243.0341796875	1	1242.63398	1241.6267	0.43265	0.00053763	-1.1443	-0.001422	-0.71167	-0.00088435	1242.632901429589	144.54	0.19092	144.56	144.5	144.69	0.024414					7	4	2	0	0	0	0.75764	1	56479	56479		1.8442	0.36234	1	278280			35683	6932	26160	26341	34694	34694					0.015552355306908794
MEKILFYLFL	10	Unmodified	_MEKILFYLFL_					0	0	0		ENSG00000165379|ENST00000298119|LRFN5	ENSG00000165379|ENST00000298119|LRFN5	ENSG00000165379|ENST00000298119|LRFN5	MULTI-MSMS	A375_MHC_IP_R2	2	440.62518310546875	3	439.582282	1315.72502	-0.45176	-0.00019859	-0.40239	-0.00017688	-0.85415	-0.00037547	439.5820694883906	36.032	0.71287	36.796	36.537	37.25	0.76338					34	13	4	0	0	0	0.71619	1	13056	13056		5.0475	0.64137	1	12340000			35684	6946	26161	26342	34695	34695					0.079784190558712
MEKIREKDKQS	11	Unmodified	_MEKIREKDKQS_					0	0	0			REV__ENSG00000076650|ENST00000170564|GPATCH1	REV__ENSG00000076650|ENST00000170564|GPATCH1	MULTI-MSMS	A375_MHC_IP_R2	2	696.7686767578125	2	696.369201	1390.72385	-0.65274	-0.00045455	-0.040355	-2.8102E-05	-0.6931	-0.00048265	696.3690202010099	132.24	1.0173	132.43	132	133.02	0.18953					46	19	3	0	0	0	0.7342	1	51969	51969		4.897	0	1	8997400	+		35685	16678	26162	26343	34696	34696					0.044115529490227345
MEKIWHHTF	9	Unmodified	_MEKIWHHTF_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;POTEF|p.D780N|1|0.31|ENSG00000196604|chr2:130075134-130075134|C/T|missense_variant;ENST00000418351.1_1_15:44281927-44282254:-|nuORF;ENST00000441772.1_1_11:1824983-1825307:-|nuORF;ENST00000428275.1_1_X:53172740-53172956:-|nuORF;ENST00000420887.2_1_3:180538532-180538697:+|nuORF;ENST00000520036.1_1_8:85861015-85861132:+|nuORF;POTEE|p.D780N|1|0.4|ENSG00000188219|chr2:131263793-131263793|G/A|missense_variant;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-SECPEP	A375_MHC_IP_R2	2	410.60260009765625	3	410.202576	1227.5859	-0.64676	-0.0002653	0.47492	0.00019481	-0.17184	-7.0489E-05	410.2027652044289	36.976	0.40436	37.747	37.564	37.968	0.7709					12	7	2	0	0	0	0.63622	1	13563	13563		19.362	19.362	1	3311700			35686	1615;5418;9064	26163	26344	34697	34697					-0.01879105788952984
MEKIWHHTF	9	Unmodified	_MEKIWHHTF_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;POTEF|p.D780N|1|0.31|ENSG00000196604|chr2:130075134-130075134|C/T|missense_variant;ENST00000418351.1_1_15:44281927-44282254:-|nuORF;ENST00000441772.1_1_11:1824983-1825307:-|nuORF;ENST00000428275.1_1_X:53172740-53172956:-|nuORF;ENST00000420887.2_1_3:180538532-180538697:+|nuORF;ENST00000520036.1_1_8:85861015-85861132:+|nuORF;POTEE|p.D780N|1|0.4|ENSG00000188219|chr2:131263793-131263793|G/A|missense_variant;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MATCH	A375_MHC_IP_R1	1		3	410.202576	1227.5859	-0.22523	-9.2389E-05	0.5652	0.00023185	0.33998	0.00013946	410.20293319623727	37.983	0.81659	37.983	37.607	38.423	0	0.11813	6.86E-05	NaN	19.362	21	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2657900			35687	1615;5418;9064	26163	26344							-0.01879105788952984
MEKRKELQQN	10	Unmodified	_MEKRKELQQN_					0	0	0			REV__nc|ENSG00000109881|Q96HJ3-2|CCDC34	REV__nc|ENSG00000109881|Q96HJ3-2|CCDC34	MULTI-MSMS	A375_MHC_IP_R1	1	652.7421264648438	2	652.342986	1302.67142	-0.6141	-0.0004006	-0.61528	-0.00040137	-1.2294	-0.00080198	652.3425288073983	130.89	0.91141	130.89	130.62	131.53	0					25	17	3	0	0	0	0.70179	1	50474	50474		11.495	1.9507	1	20177000	+		35688	17600	26164	26345	34698	34698					0.032190146060656843
MELCSLLSCV	10	Unmodified	_MELCSLLSCV_					0	0	0		ENST00000462306.5_1_2:128047812-128051699:-|nuORF	ENST00000462306.5_1_2:128047812-128051699:-|nuORF	ENST00000462306.5_1_2:128047812-128051699:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	548.7390747070312	2	549.255613	1096.49667	-0.56587	-0.00031081	0.1185	6.5085E-05	-0.44738	-0.00024572	549.2554873459533	59.187	0.45835	59.187	58.938	59.397	0					21	8	4	0	0	0	0.87163	1	21192	21192		13.906	0	1	1130700			35689	12200	26165	26346	34699	34699					-0.04771444854986839
MELDDTLKY	9	Oxidation (M)	_M(Oxidation (M))ELDDTLKY_		M(1)ELDDTLKY		M(110)ELDDTLKY	0	0	1		ENST00000472253.1_1_5:133533465-133534901:-|nuORF;nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB	ENST00000472253.1_1_5:133533465-133534901:-|nuORF	ENST00000472253.1_1_5:133533465-133534901:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	572.66552734375	2	572.265547	1142.51654	-0.27428	-0.00015696	-0.37443	-0.00021428	-0.64871	-0.00037124	572.265511840316	55.084	0.65974	55.084	54.67	55.33	0					43	12	5	0	0	0	0.0098082	2	19603	19603;19756		114.19	66.438	1	12396000			35690	2527	26166	26347	34700;34701	34700		114			-0.04901654319019144
MELDDTLKY	9	Oxidation (M)	_M(Oxidation (M))ELDDTLKY_		M(1)ELDDTLKY		M(94)ELDDTLKY	0	0	1		ENST00000472253.1_1_5:133533465-133534901:-|nuORF;nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB	ENST00000472253.1_1_5:133533465-133534901:-|nuORF	ENST00000472253.1_1_5:133533465-133534901:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	572.66552734375	2	572.265547	1142.51654	-0.50707	-0.00029018	-0.25124	-0.00014378	-0.75831	-0.00043396	572.2655357244795	54.338	0.60703	55.089	54.763	55.37	0.75075					37	11	4	0	0	0	0.021951	1	20459	20459		93.938	53.988	1	11870000			35691	2527	26166	26347	34702	34702		114			-0.04901654319019144
MELDDTLKY	9	Unmodified	_MELDDTLKY_					0	0	0		ENST00000472253.1_1_5:133533465-133534901:-|nuORF;nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB	ENST00000472253.1_1_5:133533465-133534901:-|nuORF	ENST00000472253.1_1_5:133533465-133534901:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	564.7080688476562	2	564.26809	1126.52163	-0.25114	-0.00014171	-0.48124	-0.00027155	-0.73238	-0.00041326	564.2679683981921	71.388	1.2696	71.388	70.698	71.968	0					68	24	5	0	0	0	0.019126	2	25917	25917;25984		84.522	44.572	1	22618000			35692	2527	26166	26348	34703;34704	34703					-0.03657350456387576
MELDDTLKY	9	Unmodified	_MELDDTLKY_					0	0	0		ENST00000472253.1_1_5:133533465-133534901:-|nuORF;nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB	ENST00000472253.1_1_5:133533465-133534901:-|nuORF	ENST00000472253.1_1_5:133533465-133534901:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	564.2554321289062	2	564.26809	1126.52163	-0.53791	-0.00030353	-0.6161	-0.00034765	-1.154	-0.00065118	564.2678690177831	70.768	1.2685	71.502	70.793	72.061	0.7342					51	24	4	0	0	0	0.0098082	3	26851	26755;26802;26851		114.19	66.438	1	23141000			35693	2527	26166	26348	34705;34706;34707	34707					-0.03657350456387576
MELERLYLQMW	11	Unmodified	_MELERLYLQMW_					0	0	0		nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-3|OGT	nc|ENSG00000147162|O15294-3|OGT	MULTI-MSMS	A375_MHC_IP_R1	1	504.98486328125	3	504.584357	1510.73124	-0.23722	-0.0001197	0.79345	0.00040036	0.55623	0.00028067	504.58488659707973	43.365	0.50862	43.365	43.095	43.603	0					22	9	3	0	0	0	0.73672	1	15101	15101		1.0136	0.50762	1	3863700			35694	5664	26167	26349	34708	34708					-0.003694307749356085
MELFYFNKK	9	Unmodified	_MELFYFNKK_					0	0	0			REV__nc|ENSG00000175198|P05165-3|PCCA	REV__nc|ENSG00000175198|P05165-3|PCCA	MULTI-SECPEP	A375_MHC_IP_R2	2	407.3131408691406	3	407.210849	1218.61072	-0.27859	-0.00011345	-1.9155	-0.00078001	-2.1941	-0.00089346	407.21010532843565	24.238	0.55878	24.882	24.705	25.263	0.64368					12	10	2	0	0	0	0.75519	1	7913	7913		10.151	1.5233	1	3540000	+		35695	21330	26168	26350	34709	34709					0.010155292937497507
MELPHGGEGW	10	Unmodified	_MELPHGGEGW_					0	0	0		ENST00000575981.1_1_16:3022956-3024767:-|nuORF;nc|ENSG00000127564|Q99640-4|PKMYT1;nc|ENSG00000127564|Q99640-2|PKMYT1;nc|ENSG00000127564|Q99640-3|PKMYT1;ENSG00000127564|ENST00000262300|PKMYT1	ENST00000575981.1_1_16:3022956-3024767:-|nuORF	ENST00000575981.1_1_16:3022956-3024767:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	556.6132202148438	2	556.745116	1111.47568	-0.68209	-0.00037975	-0.25914	-0.00014427	-0.94123	-0.00052402	557.2460695323379	65.745	0.25428	65.745	65.565	65.819	0					7	4	2	0	0	0	0.83355	1	23787	23787		22.736	5.794	1	716610			35696	4097	26169	26351	34710	34710					-0.07559950847962682
MELPHGGEGW	10	Unmodified	_MELPHGGEGW_					0	0	0		ENST00000575981.1_1_16:3022956-3024767:-|nuORF;nc|ENSG00000127564|Q99640-4|PKMYT1;nc|ENSG00000127564|Q99640-2|PKMYT1;nc|ENSG00000127564|Q99640-3|PKMYT1;ENSG00000127564|ENST00000262300|PKMYT1	ENST00000575981.1_1_16:3022956-3024767:-|nuORF	ENST00000575981.1_1_16:3022956-3024767:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	556.6124267578125	2	556.745116	1111.47568	-0.81302	-0.00045264	-1.3347	-0.00074311	-2.1478	-0.0011958	557.2452260016406	65.003	0.45637	65.741	65.511	65.968	0.73812					12	8	2	0	0	0	0.83355	1	24640	24640		22.736	5.6234	1	822850			35697	4097	26169	26351	34711	34711					-0.07559950847962682
MELPLSSNP	9	Unmodified	_MELPLSSNP_					0	0	0			REV__ENST00000527274.2_1_11:66245031-66245460:-|nuORF	REV__ENST00000527274.2_1_11:66245031-66245460:-|nuORF	MSMS	A375_MHC_IP_R2	2	494.177490234375	2	494.244418	986.474282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.421	1	83.164	82.664	83.664	0.74293								0	0	0	0.14767	1	31308	31308		25.399	2.663	1		+		35698	25785	26170	26352	34712	34712					-0.019495849367331175
MELVYDAHT	9	Unmodified	_MELVYDAHT_					0	0	0			REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF	REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF	MSMS	A375_MHC_IP_R1	1	539.6962890625	2	539.747324	1077.4801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.073	1	67.073	66.573	67.573	0								0	0	0	0.15283	1	24301	24301		16.942	7.5949	1		+		35699	21116	26171	26353	34713	34713					-0.055544864250805404
MELYSDKYY	9	Unmodified	_MELYSDKYY_					0	0	0			REV__tr|U7SVR4|U7SVR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01314PE=4SV=1	REV__tr|U7SVR4|U7SVR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01314PE=4SV=1	MSMS	A375_MHC_IP_R2	2	606.22705078125	2	606.26809	1210.52163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.222	1	83.962	83.462	84.462	0.73962								0	0	0	0.15411	1	31631	31631		14.838	0	1		+		35700	28596	26172	26354	34714	34714					-0.07521350456386244
MENDLPQKI	9	Unmodified	_MENDLPQKI_					0	0	0		nc|ENSG00000116815|P19256-2|CD58;nc|ENSG00000116815|P19256-3|CD58;ENSG00000116815|ENST00000369489|CD58	nc|ENSG00000116815|P19256-2|CD58	nc|ENSG00000116815|P19256-2|CD58	MULTI-SECPEP	A375_MHC_IP_R1	1	544.1549072265625	2	544.276249	1086.53795	-0.58424	-0.00031799	-0.52774	-0.00028724	-1.112	-0.00060523	544.2759027817111	46.399	0.45162	46.399	46.094	46.545	0					15	8	3	0	0	0	0.58126	1	16289	16289		33.445	24.062	1	2257700			35701	3435	26173	26355	34715	34715					-0.0018622449965732812
MENDLPQKI	9	Unmodified	_MENDLPQKI_					0	0	0		nc|ENSG00000116815|P19256-2|CD58;nc|ENSG00000116815|P19256-3|CD58;ENSG00000116815|ENST00000369489|CD58	nc|ENSG00000116815|P19256-2|CD58	nc|ENSG00000116815|P19256-2|CD58	MULTI-SECPEP	A375_MHC_IP_R2	2	544.6759643554688	2	544.276249	1086.53795	-0.82736	-0.00045031	-0.54734	-0.0002979	-1.3747	-0.00074821	544.2760160621464	45.553	0.40381	46.319	46.099	46.503	0.76519					16	7	3	0	0	0	0.40495	1	17051	17051		40.239	40.239	1	2759000			35702	3435	26173	26355	34716	34716					-0.0018622449965732812
MENDLPQKI	9	Oxidation (M)	_M(Oxidation (M))ENDLPQKI_		M(1)ENDLPQKI		M(85)ENDLPQKI	0	0	1		nc|ENSG00000116815|P19256-2|CD58;nc|ENSG00000116815|P19256-3|CD58;ENSG00000116815|ENST00000369489|CD58	nc|ENSG00000116815|P19256-2|CD58	nc|ENSG00000116815|P19256-2|CD58	MULTI-SECPEP	A375_MHC_IP_R1	1	552.6734619140625	2	552.273706	1102.53286	-0.72966	-0.00040297	0.24771	0.0001368	-0.48195	-0.00026617	552.2738099000921	37.938	0.5584	37.938	37.71	38.268	0					14	10	2	0	0	0	0.049608	1	12836	12836		84.522	70.616	1	6098400			35703	3435	26173	26356	34717	34717		174			-0.014305283622661591
MENDLPQKI	9	Oxidation (M)	_M(Oxidation (M))ENDLPQKI_		M(1)ENDLPQKI		M(160)ENDLPQKI	0	0	1		nc|ENSG00000116815|P19256-2|CD58;nc|ENSG00000116815|P19256-3|CD58;ENSG00000116815|ENST00000369489|CD58	nc|ENSG00000116815|P19256-2|CD58	nc|ENSG00000116815|P19256-2|CD58	MULTI-SECPEP	A375_MHC_IP_R2	2	552.673095703125	2	552.273706	1102.53286	-1.3615	-0.0007519	0.34039	0.00018799	-1.0211	-0.00056392	552.2737841151903	37.167	0.60979	37.938	37.665	38.275	0.7709					16	11	3	0	0	0	0.010806	1	13598	13598		159.1	93.866	1	3838400			35704	3435	26173	26356	34718	34718		174			-0.014305283622661591
MENGIVRNW	9	Unmodified	_MENGIVRNW_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MSMS	A375_MHC_IP_R1	1	559.6942749023438	2	559.774208	1117.53386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.652	1	56.652	56.152	57.152	0								0	0	0	0.14851	1	20299	20299		24.021	11.489	1				35705	4950	26174	26357	34719	34719					-0.020202692027169178
MENGIVRNW	9	Unmodified	_MENGIVRNW_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MSMS	A375_MHC_IP_R2	2	559.6941528320312	2	559.774208	1117.53386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.826	1	56.576	56.076	57.076	0.75015								0	0	0	0.092288	1	21094	21094		43.858	21.122	1				35706	4950	26174	26357	34720	34720					-0.020202692027169178
MENYKELS	8	Unmodified	_MENYKELS_					0	0	0			REV__tr|U7SGW6|U7SGW6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02193PE=4SV=1	REV__tr|U7SGW6|U7SGW6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02193PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	506.9273681640625	2	507.23405	1012.45355	-0.51456	-0.000261	-0.47805	-0.00024248	-0.99261	-0.00050348	507.23376439087343	32.205	0.40954	32.205	32.024	32.434	0					11	7	2	0	0	0	0.8957	1	10352	10352		15.847	0	1	2912600	+		35707	28197	26175	26358	34721	34721					-0.05218175316406359
MENYYHVEL	9	Unmodified	_MENYYHVEL_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	MSMS	A375_MHC_IP_R1	1	599.2192993164062	2	599.265881	1196.51721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.04	1	105.04	104.54	105.54	0								0	0	0	0.15283	1	38567	38567		16.942	3.8998	1		+		35708	22333	26176	26359	34722	34722					-0.0731881487931787
MEPCNEDDY	9	Unmodified	_MEPCNEDDY_					0	0	0			REV__ENST00000475700.1_1_1:112305552-112305606:+|nuORF	REV__ENST00000475700.1_1_1:112305552-112305606:+|nuORF	MSMS	A375_MHC_IP_R2	2	558.1398315429688	2	558.186439	1114.35833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.25	1	110.99	110.49	111.49	0.73692								0	0	0	0.15486	1	41594	41594		4.756	0.42677	1		+		35709	25173	26177	26360	34723	34723					-0.1942789656975492
MEPGSAVGAL	10	Unmodified	_MEPGSAVGAL_					0	0	0		ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	MSMS	A375_MHC_IP_R2	2	466.1612548828125	2	466.23131	930.448068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.891	1	45.66	45.16	46.16	0.7691								0	0	0	0.15105	1	16766	16766		15.847	2.3393	1				35710	5754	26178	26361	34724	34724					-0.01993854108229698
MEPRMRWRRR	10	Unmodified	_MEPRMRWRRR_					0	0	0		ENST00000592505.1_1_19:11038470-11038518:-|nuORF;ENST00000253031.6_1_19:11034814-11038527:-|nuORF	ENST00000592505.1_1_19:11038470-11038518:-|nuORF	ENST00000592505.1_1_19:11038470-11038518:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	492.3313293457031	3	491.931196	1472.77176	0.13299	6.5422E-05	0.68201	0.0003355	0.815	0.00040092	491.9315045182133	48.787	0.35438	48.787	48.629	48.983	0					10	6	2	0	0	0	0.94163	1	17253	17253		6.1918	2.0752	1	3120100			35711	10214	26179	26362	34725	34725					0.054283931787040274
MEPSTAARAW	10	Oxidation (M)	_M(Oxidation (M))EPSTAARAW_		M(1)EPSTAARAW		M(64)EPSTAARAW	0	0	1		nc|ENSG00000244038|P39656-2|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENST00000477229.1_1_1:20987242-20987843:-|nuORF	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	A375_MHC_IP_R1	1	568.6630859375	2	568.263673	1134.51279	-0.32338	-0.00018377	0.18185	0.00010334	-0.14153	-8.0429E-05	568.2638168734971	33.462	1.6697	33.462	33.09	34.759	0					48	32	3	0	0	0	0.098574	3	10914	10914;10963;11281		63.961	24.463	1	4996000			35712	9818	26180	26363	34726;34727;34728	34726		443			-0.04908279302230767
MEPSTAARAW	10	Oxidation (M)	_M(Oxidation (M))EPSTAARAW_		M(1)EPSTAARAW		M(57)EPSTAARAW	0	0	1		nc|ENSG00000244038|P39656-2|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENST00000477229.1_1_1:20987242-20987843:-|nuORF	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	A375_MHC_IP_R2	2	568.1878662109375	2	568.263673	1134.51279	-0.44105	-0.00025063	0.23115	0.00013135	-0.2099	-0.00011928	568.263735014445	32.844	1.221	33.581	33.112	34.333	0.73692					44	23	3	0	0	0	0.1298	2	11640	11640;11705		57.249	24.463	1	5582300			35713	9818	26180	26363	34729;34730	34729		443			-0.04908279302230767
MEPSTAARAW	10	Unmodified	_MEPSTAARAW_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENST00000477229.1_1_1:20987242-20987843:-|nuORF	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-SECPEP	A375_MHC_IP_R1	1	560.665771484375	2	560.266216	1118.51788	-0.24775	-0.00013881	-0.15103	-8.4615E-05	-0.39878	-0.00022342	560.2661405500309	42.974	0.61071	42.974	42.638	43.249	0					27	11	3	0	0	0	0.22519	1	14919	14919		59.368	28.732	1	5230800			35714	9818	26180	26364	34731	34731					-0.036639754395991986
MEPSTAARAW	10	Unmodified	_MEPSTAARAW_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENST00000477229.1_1_1:20987242-20987843:-|nuORF	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-SECPEP	A375_MHC_IP_R2	2	560.6658325195312	2	560.266216	1118.51788	-0.58301	-0.00032664	-0.12936	-7.2478E-05	-0.71237	-0.00039912	560.2661509058554	42.213	0.86617	42.985	42.656	43.523	0.7724					35	15	4	0	0	0	0.66275	1	15720	15720		36.506	17.249	1	7019500			35715	9818	26180	26364	34732	34732					-0.036639754395991986
MEPYLPGDFY	10	Unmodified	_MEPYLPGDFY_					0	0	0			REV__ENSG00000176971|ENST00000318627|FIBIN	REV__ENSG00000176971|ENST00000318627|FIBIN	MSMS	A375_MHC_IP_R2	2	616.1572875976562	2	616.270632	1230.52671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.175	1	96.925	96.425	97.425	0.75045								0	0	0	0.15308	1	36520	36520		10.824	2.0785	1		+		35716	21431	26181	26365	34733	34733					-0.07933046593780091
MESDFEQKL	9	Unmodified	_MESDFEQKL_					0	0	0		ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	MULTI-MSMS	A375_MHC_IP_R2	2	564.2158813476562	2	563.757889	1125.50123	-0.78185	-0.00044077	-0.91078	-0.00051346	-1.6926	-0.00095423	563.7579524498583	49.461	0.45459	50.218	49.843	50.297	0.75736					11	8	2	0	0	0	0.34064	1	18554	18554		27.629	3.6082	1	1595800			35717	4337	26182	26366	34734	34734					-0.056505211161947955
MESDYEDDDDD	11	Unmodified	_MESDYEDDDDD_					0	0	0			REV__ENST00000536336.5_1_11:18633859-18655855:-|nuORF	REV__ENST00000536336.5_1_11:18633859-18655855:-|nuORF	MSMS	A375_MHC_IP_R2	2	674.4351196289062	2	674.703902	1347.39325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.005	1	10.452	9.9517	10.952	0.44698								0	0	0	0.1636	1	3114	3114		0	0	1		+		35718	21544	26183	26367	34735	34735					-0.2665502701877358
MESDYEDDDDD	11	Unmodified	_MESDYEDDDDD_					0	0	0			REV__ENST00000536336.5_1_11:18633859-18655855:-|nuORF	REV__ENST00000536336.5_1_11:18633859-18655855:-|nuORF	MSMS	A375_MHC_IP_R2	2	674.4345092773438	2	674.703902	1347.39325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.141	1	13.686	13.186	14.186	0.54443								0	0	0	0.1636	1	4036	4036		0	0	1		+		35719	21544	26183	26367	34736	34736					-0.2665502701877358
MESKLKLLKKS	11	Unmodified	_MESKLKLLKKS_					0	0	0			REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1	REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1	MSMS	A375_MHC_IP_R2	2	652.8154296875	2	652.902148	1303.78974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.295	1	64.035	63.535	64.535	0.74022								0	0	0	0.16334	1	23995	23995		1.3295	0	1		+		35720	18037	26184	26368	34737	34737					0.1499999386185209
MESPLGSHW	9	Oxidation (M)	_M(Oxidation (M))ESPLGSHW_		M(1)ESPLGSHW		M(93)ESPLGSHW	0	0	1		ENST00000288235.8_1_15:59664829-59664865:-|nuORF	ENST00000288235.8_1_15:59664829-59664865:-|nuORF	ENST00000288235.8_1_15:59664829-59664865:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	530.6317138671875	2	530.231842	1058.44913	-0.74218	-0.00039353	-0.64073	-0.00033974	-1.3829	-0.00073327	530.2319889309011	52.934	0.81166	52.934	52.438	53.25	0					28	15	3	0	0	0	0.012712	1	18893	18893		92.822	25.478	1	3674000			35721	10459	26185	26369	34738	34738		448			-0.07775639739293183
MESPLGSHW	9	Oxidation (M)	_M(Oxidation (M))ESPLGSHW_		M(1)ESPLGSHW		M(82)ESPLGSHW	0	0	1		ENST00000288235.8_1_15:59664829-59664865:-|nuORF	ENST00000288235.8_1_15:59664829-59664865:-|nuORF	ENST00000288235.8_1_15:59664829-59664865:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	530.6317749023438	2	530.231842	1058.44913	-0.99058	-0.00052524	-0.61827	-0.00032783	-1.6089	-0.00085307	530.2319752034117	52.264	0.65917	53.016	52.626	53.285	0.75225					27	12	3	0	0	0	0.022213	1	19723	19723		81.613	39.519	1	3195400			35722	10459	26185	26369	34739	34739		448			-0.07775639739293183
MESPLGSHW	9	Unmodified	_MESPLGSHW_					0	0	0		ENST00000288235.8_1_15:59664829-59664865:-|nuORF	ENST00000288235.8_1_15:59664829-59664865:-|nuORF	ENST00000288235.8_1_15:59664829-59664865:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	522.6342163085938	2	522.234384	1042.45422	-0.87302	-0.00045592	0.30009	0.00015672	-0.57294	-0.00029921	522.2344433580827	67.706	0.76002	67.706	67.348	68.108	0					26	14	3	0	0	0	0.20567	1	24531	24531		37.974	16.227	1	2176900			35723	10459	26185	26370	34740	34740					-0.06531335876684352
MESPLGSHW	9	Unmodified	_MESPLGSHW_					0	0	0		ENST00000288235.8_1_15:59664829-59664865:-|nuORF	ENST00000288235.8_1_15:59664829-59664865:-|nuORF	ENST00000288235.8_1_15:59664829-59664865:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	522.6336669921875	2	522.234384	1042.45422	-0.65489	-0.00034201	-0.60917	-0.00031813	-1.2641	-0.00066013	522.2341050613043	66.886	0.55752	67.623	67.393	67.951	0.73631					19	10	2	0	0	0	0.034481	2	25348	25335;25348		71.134	31.176	1	3055800			35724	10459	26185	26370	34741;34742	34742					-0.06531335876684352
MESRESSQL	9	Unmodified	_MESRESSQL_					0	0	0			REV__ENST00000475066.1_1_7:154759501-154775093:-|nuORF	REV__ENST00000475066.1_1_7:154759501-154775093:-|nuORF	MSMS	A375_MHC_IP_R1	1	533.7032470703125	2	533.745313	1065.47607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.118	1	57.118	56.618	57.618	0								0	0	0	0.15142	1	20480	20480		19.257	1.122	1		+		35725	20018	26186	26371	34743	34743					-0.05404575918782939
MEVEVDGQKF	10	Oxidation (M)	_M(Oxidation (M))EVEVDGQKF_		M(1)EVEVDGQKF		M(160)EVEVDGQKF	0	0	1		nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000492885.1_1_9:125898316-125898746:-|nuORF;nc|ENSG00000165209|Q96SI9-2|STRBP;ENSG00000165209|ENST00000348403|STRBP	nc|ENSG00000129351|Q12906-2|ILF3	nc|ENSG00000129351|Q12906-2|ILF3	MULTI-MSMS	A375_MHC_IP_R1	1	599.6759643554688	2	599.276446	1196.53834	-0.42618	-0.0002554	-0.0093326	-5.5928E-06	-0.43551	-0.00026099	599.2764328316167	46.377	0.65565	46.377	46.043	46.699	0					26	12	3	0	0	0	2.5819E-05	1	16264	16264		155.95	114.11	1	8228300			35726	14595	26187	26372	34744	34744		468			-0.05206849570458871
MEVEVDGQKF	10	Oxidation (M)	_M(Oxidation (M))EVEVDGQKF_		M(1)EVEVDGQKF		M(140)EVEVDGQKF	0	0	1		nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000492885.1_1_9:125898316-125898746:-|nuORF;nc|ENSG00000165209|Q96SI9-2|STRBP;ENSG00000165209|ENST00000348403|STRBP	nc|ENSG00000129351|Q12906-2|ILF3	nc|ENSG00000129351|Q12906-2|ILF3	MULTI-MSMS	A375_MHC_IP_R1	1	599.6759643554688	2	599.276446	1196.53834	-0.53345	-0.00031968	0.050182	3.0073E-05	-0.48326	-0.00028961	599.2767177789864	46.902	1.2229	46.902	46.647	47.87	0					37	23	3	0	0	0	0.0042118	1	16492	16492		136.39	94.437	1	6369000			35727	14595	26187	26372	34745	34745		468			-0.05206849570458871
MEVEVDGQKF	10	Oxidation (M)	_M(Oxidation (M))EVEVDGQKF_		M(1)EVEVDGQKF		M(110)EVEVDGQKF	0	0	1		nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000492885.1_1_9:125898316-125898746:-|nuORF;nc|ENSG00000165209|Q96SI9-2|STRBP;ENSG00000165209|ENST00000348403|STRBP	nc|ENSG00000129351|Q12906-2|ILF3	nc|ENSG00000129351|Q12906-2|ILF3	MULTI-MSMS	A375_MHC_IP_R1	1	599.6764526367188	2	599.276446	1196.53834	-0.27727	-0.00016616	-0.84522	-0.00050652	-1.1225	-0.00067268	599.2764708886585	62.737	0.66639	62.737	62.351	63.018	0					25	12	3	0	0	0	0.0086801	1	22674	22674		107.1	63.327	1	3282500			35728	14595	26187	26372	34746	34746		468			-0.05206849570458871
MEVEVDGQKF	10	Oxidation (M)	_M(Oxidation (M))EVEVDGQKF_		M(1)EVEVDGQKF		M(130)EVEVDGQKF	0	0	1		nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000492885.1_1_9:125898316-125898746:-|nuORF;nc|ENSG00000165209|Q96SI9-2|STRBP;ENSG00000165209|ENST00000348403|STRBP	nc|ENSG00000129351|Q12906-2|ILF3	nc|ENSG00000129351|Q12906-2|ILF3	MULTI-MSMS	A375_MHC_IP_R2	2	599.6761474609375	2	599.276446	1196.53834	-0.43137	-0.00025851	-0.45631	-0.00027346	-0.88768	-0.00053197	599.2763817168033	46.241	0.4568	47.006	46.805	47.262	0.76519					20	8	3	0	0	0	0.0068576	2	17325	17254;17325		132.38	96.253	1	7066500			35729	14595	26187	26372	34747;34748	34748		468			-0.05206849570458871
MEVEVDGQKF	10	Oxidation (M)	_M(Oxidation (M))EVEVDGQKF_		M(1)EVEVDGQKF		M(55)EVEVDGQKF	0	0	1		nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000492885.1_1_9:125898316-125898746:-|nuORF;nc|ENSG00000165209|Q96SI9-2|STRBP;ENSG00000165209|ENST00000348403|STRBP	nc|ENSG00000129351|Q12906-2|ILF3	nc|ENSG00000129351|Q12906-2|ILF3	MULTI-MSMS	A375_MHC_IP_R2	2	599.6753540039062	2	599.276446	1196.53834	-0.72035	-0.00043169	-0.93273	-0.00055897	-1.6531	-0.00099065	599.7774505300387	62.086	1.1136	62.829	62.521	63.634	0.74263					35	21	3	0	0	0	0.14143	1	23588	23588		55.235	35.978	1	3287900			35730	14595	26187	26372	34749	34749		468			-0.05206849570458871
MEVEVDGQKF	10	Oxidation (M)	_M(Oxidation (M))EVEVDGQKF_		M(1)EVEVDGQKF		M(140)EVEVDGQKF	0	0	1		nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000492885.1_1_9:125898316-125898746:-|nuORF;nc|ENSG00000165209|Q96SI9-2|STRBP;ENSG00000165209|ENST00000348403|STRBP	nc|ENSG00000129351|Q12906-2|ILF3	nc|ENSG00000129351|Q12906-2|ILF3	MULTI-SECPEP	A375_MHC_IP_R2	2	599.6767578125	2	599.276446	1196.53834	-0.51645	-0.0003095	0.14639	8.7727E-05	-0.37006	-0.00022177	599.276482572509	45.746	0.55304	46.511	46.252	46.805	0.76519					25	10	3	0	0	0	0.011428	1	17102	17102		139.78	103.65	1	8564500			35731	14595	26187	26372	34750	34750		468			-0.05206849570458871
MEVEVDGQKF	10	Unmodified	_MEVEVDGQKF_					0	0	0		nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000492885.1_1_9:125898316-125898746:-|nuORF;nc|ENSG00000165209|Q96SI9-2|STRBP;ENSG00000165209|ENST00000348403|STRBP	nc|ENSG00000129351|Q12906-2|ILF3	nc|ENSG00000129351|Q12906-2|ILF3	MULTI-SECPEP	A375_MHC_IP_R1	1	591.6790771484375	2	591.278989	1180.54342	-0.22443	-0.0001327	0.049294	2.9146E-05	-0.17514	-0.00010355	591.2790985308436	62.718	0.97424	62.718	62.351	63.326	0					39	18	4	0	0	0	0.030251	1	22618	22618		154.75	120.35	1	18548000			35732	14595	26187	26373	34751	34751					-0.03962545707827303
MEVEVDGQKF	10	Unmodified	_MEVEVDGQKF_					0	0	0		nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000492885.1_1_9:125898316-125898746:-|nuORF;nc|ENSG00000165209|Q96SI9-2|STRBP;ENSG00000165209|ENST00000348403|STRBP	nc|ENSG00000129351|Q12906-2|ILF3	nc|ENSG00000129351|Q12906-2|ILF3	MULTI-SECPEP	A375_MHC_IP_R2	2	591.1664428710938	2	591.278989	1180.54342	-0.77578	-0.0004587	-0.17364	-0.00010267	-0.94942	-0.00056137	591.2790243119692	62.058	0.81261	62.801	62.521	63.333	0.74263					40	15	4	0	0	0	0.79749	1	23443	23443		21.59	5.441	1	17814000			35733	14595	26187	26373	34752	34752					-0.03962545707827303
MEVFLPQSY	9	Unmodified	_MEVFLPQSY_					0	0	0		ENST00000513565.6_1_5:122694091-122724023:-|nuORF;nc|ENSG00000168944|Q8N960-2|CEP120;ENSG00000168944|ENST00000306467|CEP120	ENST00000513565.6_1_5:122694091-122724023:-|nuORF	ENST00000513565.6_1_5:122694091-122724023:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	556.7109985351562	2	557.267893	1112.52123	-0.40596	-0.00022623	0.97869	0.00054539	0.57273	0.00031917	557.2683541645675	111.09	0.61443	111.09	110.8	111.41	0					16	11	2	0	0	0	0.30925	1	40708	40708		34.932	16.786	1	1778800			35734	7364	26188	26374	34753	34753					-0.030527253855780145
MEVGPTMVG	9	Unmodified	_MEVGPTMVG_					0	0	0		ENSG00000137880|ENST00000260447|GCHFR	ENSG00000137880|ENST00000260447|GCHFR	ENSG00000137880|ENST00000260447|GCHFR	MSMS	A375_MHC_IP_R1	1	460.6899719238281	2	460.714439	919.414325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.321	1	43.321	42.821	43.821	0								0	0	0	0.15486	1	15052	15052		7.2892	0.56607	1				35735	4934	26189	26375	34754	34754					-0.04860598871619004
MEVRQRVFG	9	Unmodified	_MEVRQRVFG_					0	0	0		ENST00000561810.1_1_15:52708302-52718136:-|nuORF	ENST00000561810.1_1_15:52708302-52718136:-|nuORF	ENST00000561810.1_1_15:52708302-52718136:-|nuORF	MSMS	A375_MHC_IP_R1	1	374.4335632324219	3	374.534326	1120.58115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.393	1	40.393	39.893	40.893	0								0	0	0	0.15486	1	13877	13877		2.7352	0	1				35736	13513	26190	26376	34755	34755					0.02568010068307558
MEWWDESEESL	11	Unmodified	_MEWWDESEESL_					0	0	0		nc|ENSG00000205238|Q495Y8-2|SPDYE2;ENSG00000260097|ENST00000563237|SPDYE6;ENSG00000205238|ENST00000691607|SPDYE2;ENSG00000173678|ENST00000507450|SPDYE2B;ENSG00000170092|ENST00000625065|SPDYE5	nc|ENSG00000205238|Q495Y8-2|SPDYE2	nc|ENSG00000205238|Q495Y8-2|SPDYE2	MSMS	A375_MHC_IP_R2	2	720.7849731445312	2	720.784832	1439.55511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.15	1	101.91	101.41	102.41	0.76428								0	0	0	0.16334	1	38343	38343		1.3295	0.13619	1				35737	7820	26191	26377	34756	34756					-0.1470839347512083
MEYGGEKSL	9	Unmodified	_MEYGGEKSL_					0	0	0		ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK	ENSG00000168078|ENST00000301905|PBK	ENSG00000168078|ENST00000301905|PBK	MULTI-MSMS	A375_MHC_IP_R2	2	507.6335754394531	2	507.23405	1012.45355	-0.76195	-0.00038649	-0.21944	-0.00011131	-0.98139	-0.00049779	507.23391838221033	31.538	0.4599	32.257	32.077	32.536	0.71857					13	8	2	0	0	0	0.41879	1	11176	11176		23.79	6.8475	1	2743200			35738	7261	26192	26378	34757	34757					-0.05218175316406359
MEYITKQGF	9	Unmodified	_MEYITKQGF_					0	0	0		ENSG00000168301|ENST00000404589|KCTD6	ENSG00000168301|ENST00000404589|KCTD6	ENSG00000168301|ENST00000404589|KCTD6	MULTI-MSMS	A375_MHC_IP_R1	1	559.1726684570312	2	558.773342	1115.53213	-0.52527	-0.00029351	-1.5297	-0.00085473	-2.0549	-0.0011482	558.7725810846979	55.235	0.55829	55.235	54.873	55.431	0					18	10	2	0	0	0	0.027818	1	19763	19763		76.825	48.338	1	2040900			35739	7286	26193	26379	34758	34758					-0.021013230113112513
MEYITKQGF	9	Unmodified	_MEYITKQGF_					0	0	0		ENSG00000168301|ENST00000404589|KCTD6	ENSG00000168301|ENST00000404589|KCTD6	ENSG00000168301|ENST00000404589|KCTD6	MULTI-MSMS	A375_MHC_IP_R2	2	559.1730346679688	2	558.773342	1115.53213	-0.90942	-0.00050816	0.23532	0.00013149	-0.6741	-0.00037667	558.7733205666142	54.486	0.40425	55.237	55.018	55.422	0.75075					17	7	3	0	0	0	0.050868	1	20613	20613		63.961	39.94	1	2309100			35740	7286	26193	26379	34759	34759					-0.021013230113112513
MFAKLRPLV	9	Unmodified	_MFAKLRPLV_					0	0	0			REV__ENSG00000117069|ENST00000477717|ST6GALNAC5	REV__ENSG00000117069|ENST00000477717|ST6GALNAC5	MULTI-MSMS	A375_MHC_IP_R1	1	537.7269897460938	2	537.828255	1073.64196	-1.0383	-0.00055841	-0.55781	-0.00030001	-1.5961	-0.00085842	537.8274318190296	149.91	0.94484	149.91	149.06	150	0					68	41	2	0	0	0	0.77154	1	56964	56964		0.6015	0.076735	1	91595	+		35741	17990	26194	26380	34760	34760					0.10808147118518718
MFDGKFVV	8	Unmodified	_MFDGKFVV_					0	0	0		nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	MULTI-SECPEP	A375_MHC_IP_R1	1	472.1407470703125	2	471.741314	941.468075	-0.40831	-0.00019262	-0.03676	-1.7341E-05	-0.44507	-0.00020996	471.74117051576155	83.336	0.50885	83.336	83.075	83.583	0					15	9	2	0	0	0	0.84294	1	30497	30497		24.021	9.4389	1	1390400			35742	5957	26195	26381	34761	34761					-0.0050005837759954375
MFDGKFVV	8	Unmodified	_MFDGKFVV_					0	0	0		nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	MULTI-SECPEP	A375_MHC_IP_R2	2	472.1408996582031	2	471.741314	941.468075	-0.60611	-0.00028593	-0.20781	-9.8032E-05	-0.81392	-0.00038396	471.74125556428254	82.443	0.50684	83.186	82.94	83.447	0.74293					13	9	2	0	0	0	0.76996	1	31323	31323		36.127	14.38	1	1797300			35743	5957	26195	26381	34762	34762					-0.0050005837759954375
MFFENKDIQG	10	Unmodified	_MFFENKDIQG_					0	0	0		tr|U7SIS5|U7SIS5_FUSNUCRISPR-associatedendoribonucleasecas6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02168PE=4SV=1	tr|U7SIS5|U7SIS5_FUSNUCRISPR-associatedendoribonucleasecas6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02168PE=4SV=1	tr|U7SIS5|U7SIS5_FUSNUCRISPR-associatedendoribonucleasecas6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02168PE=4SV=1	MSMS	A375_MHC_IP_R1	1	614.6692504882812	2	614.786981	1227.55941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.35	1	138.35	137.85	138.85	0								0	0	0	0.15451	1	53220	53220		6.2058	0.9089	1				35744	29433	26196	26382	34763	34763					-0.04526839470941013
MFFTRMQSF	9	2 Oxidation (M)	_M(Oxidation (M))FFTRM(Oxidation (M))QSF_		M(1)FFTRM(1)QSF		M(78)FFTRM(78)QSF	0	0	2		ENST00000372724.5_1_10:76598507-76602417:+|nuORF;ENST00000372714.5_1_10:76586522-76602417:+|nuORF	ENST00000372724.5_1_10:76598507-76602417:+|nuORF	ENST00000372724.5_1_10:76598507-76602417:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	614.1699829101562	2	613.770277	1225.526	-0.3163	-0.00019414	0.25619	0.00015724	-0.060112	-3.6895E-05	613.7703764249094	59.677	0.86436	59.677	59.498	60.363	0					31	16	2	0	0	0	0.026372	2	21492	21492;21585		78.06	60.948	1	2730000			35745	11211	26197	26383	34764;34765	34764		450;451			-0.07774164514466975
MFFTRMQSF	9	2 Oxidation (M)	_M(Oxidation (M))FFTRM(Oxidation (M))QSF_		M(1)FFTRM(1)QSF		M(53)FFTRM(53)QSF	0	0	2		ENST00000372724.5_1_10:76598507-76602417:+|nuORF;ENST00000372714.5_1_10:76586522-76602417:+|nuORF	ENST00000372724.5_1_10:76598507-76602417:+|nuORF	ENST00000372724.5_1_10:76598507-76602417:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	614.1703491210938	2	613.770277	1225.526	-0.96799	-0.00059412	0.04366	2.6797E-05	-0.92433	-0.00056732	613.7705034328867	59.188	1.0637	59.935	59.286	60.349	0.74714					41	20	3	0	0	0	0.084766	1	22365	22365		53.404	30.668	1	1869600			35746	11211	26197	26383	34766	34766		450;451			-0.07774164514466975
MFFTRMQSF	9	Oxidation (M)	_MFFTRM(Oxidation (M))QSF_		MFFTRM(1)QSF		M(-90)FFTRM(90)QSF	0	0	1		ENST00000372724.5_1_10:76598507-76602417:+|nuORF;ENST00000372714.5_1_10:76586522-76602417:+|nuORF	ENST00000372724.5_1_10:76598507-76602417:+|nuORF	ENST00000372724.5_1_10:76598507-76602417:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	606.1729125976562	2	605.772819	1209.53109	-0.33928	-0.00020553	-0.86791	-0.00052575	-1.2072	-0.00073128	605.7729666261483	74.139	0.86086	74.139	73.843	74.704	0					35	16	3	0	0	0	0.0098859	1	26976	26976		117.76	89.274	2	3806700			35747	11211	26197	26384	34767	34767		450;451			-0.06529860651880881
MFFTRMQSF	9	Oxidation (M)	_MFFTRM(Oxidation (M))QSF_		MFFTRM(1)QSF		M(-70)FFTRM(70)QSF	0	0	1		ENST00000372724.5_1_10:76598507-76602417:+|nuORF;ENST00000372714.5_1_10:76586522-76602417:+|nuORF	ENST00000372724.5_1_10:76598507-76602417:+|nuORF	ENST00000372724.5_1_10:76598507-76602417:+|nuORF	MSMS	A375_MHC_IP_R1	1	606.1729125976562	2	605.772819	1209.53109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.5	1	77.5	77	78	0								0	0	0	0.026862	1	28273	28273		75.761	43.455	2				35748	11211	26197	26384	34768	34768		450;451			-0.06529860651880881
MFFTRMQSF	9	Oxidation (M)	_MFFTRM(Oxidation (M))QSF_		MFFTRM(1)QSF		M(-98)FFTRM(98)QSF	0	0	1		ENST00000372724.5_1_10:76598507-76602417:+|nuORF;ENST00000372714.5_1_10:76586522-76602417:+|nuORF	ENST00000372724.5_1_10:76598507-76602417:+|nuORF	ENST00000372724.5_1_10:76598507-76602417:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	606.1727905273438	2	605.772819	1209.53109	-0.37397	-0.00022654	-0.32487	-0.0001968	-0.69884	-0.00042334	605.772839224967	73.227	0.6619	73.963	73.734	74.396	0.73541					30	12	3	0	0	0	0.0064781	1	27793	27793		132.38	101.11	2	4060800			35749	11211	26197	26384	34769	34769		450;451			-0.06529860651880881
MFFTRMQSF	9	Unmodified	_MFFTRMQSF_					0	0	0		ENST00000372724.5_1_10:76598507-76602417:+|nuORF;ENST00000372714.5_1_10:76586522-76602417:+|nuORF	ENST00000372724.5_1_10:76598507-76602417:+|nuORF	ENST00000372724.5_1_10:76598507-76602417:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	598.1754150390625	2	597.775362	1193.53617	-0.50063	-0.00029927	-0.37172	-0.00022221	-0.87235	-0.00052147	597.7753168431277	94.319	0.71019	94.319	93.941	94.651	0					33	13	3	0	0	0	0.042716	1	34634	34634		96.367	56.417	1	5794000			35750	11211	26197	26385	34770	34770					-0.05285556789249313
MFFTRMQSF	9	Unmodified	_MFFTRMQSF_					0	0	0		ENST00000372724.5_1_10:76598507-76602417:+|nuORF;ENST00000372714.5_1_10:76586522-76602417:+|nuORF	ENST00000372724.5_1_10:76598507-76602417:+|nuORF	ENST00000372724.5_1_10:76598507-76602417:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	598.17529296875	2	597.775362	1193.53617	-0.42167	-0.00025207	-0.2186	-0.00013067	-0.64027	-0.00038274	597.7755339808654	93.443	0.81288	94.188	93.904	94.717	0.74474					41	15	5	0	0	0	0.030244	1	35493	35493		107.1	74.794	1	8779000			35751	11211	26197	26385	34771	34771					-0.05285556789249313
MFGGRGGK	8	Unmodified	_MFGGRGGK_					0	0	0			REV__ENST00000434618.6_1_6:33281817-33282111:-|nuORF	REV__ENST00000434618.6_1_6:33281817-33282111:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	809.8079833984375	1	809.408669	808.401392	-0.75727	-0.00061294	1.2575	0.0010179	0.50026	0.00040492	809.4091630126948	144.37	0.19629	144.37	144.25	144.45	0					5	4	2	0	0	0	0.77861	1	55384	55384		0	0	1	219980	+		35752	24739	26198	26386	34772	34772					-0.010472491488258129
MFILIRRLLHL	11	Unmodified	_MFILIRRLLHL_					0	0	0		ENST00000409054.1_1_2:87883245-87883284:+|nuORF	ENST00000409054.1_1_2:87883245-87883284:+|nuORF	ENST00000409054.1_1_2:87883245-87883284:+|nuORF	MSMS	A375_MHC_IP_R2	2	475.66021728515625	3	475.635603	1423.88498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.775	1	48.536	48.036	49.036	0.76128								0	0	0	0.16301	1	17925	17925		3.0723	2.6177	1				35753	11620	26199	26387	34773	34773					0.18999391843590274
MFIYIKPS	8	Unmodified	_MFIYIKPS_					0	0	0		ENSG00000184954|ENST00000327335|OR6C70	ENSG00000184954|ENST00000327335|OR6C70	ENSG00000184954|ENST00000327335|OR6C70	MSMS	A375_MHC_IP_R2	2	499.6745910644531	2	499.772614	997.530675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.104	1	67.84	67.34	68.34	0.73631								0	0	0	0.16876	1	25421	25421		23.148	3.7094	1				35754	8622	26200	26388	34774	34774					0.03181087690597906
MFLKDKNPT	9	Unmodified	_MFLKDKNPT_					0	0	0		ENST00000358154.7_1_16:21666912-21667038:+|nuORF	ENST00000358154.7_1_16:21666912-21667038:+|nuORF	ENST00000358154.7_1_16:21666912-21667038:+|nuORF	MSMS	A375_MHC_IP_R1	1	365.1794128417969	3	365.195198	1092.56377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.75	1	141.75	141.25	142.25	0								0	0	0	0.15486	1	54401	54401		1.0715	0	1				35755	10994	26201	26389	34775	34775					0.021186697426401224
MFLLQDRWRPR	11	Unmodified	_MFLLQDRWRPR_					0	0	0			REV__TMEM140|p.L82Pfs*28|1|0.17|ENSG00000146859|chr7:135164680-135164681|-/G|frameshift_variant	REV__TMEM140|p.L82Pfs*28|1|0.17|ENSG00000146859|chr7:135164680-135164681|-/G|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	758.7319946289062	2	759.411537	1516.80852	-0.081174	-6.1644E-05	0.60445	0.00045903	0.52328	0.00039738	759.4119481279325	44.601	0.45752	44.601	44.37	44.827	0					23	8	4	0	0	0	1.0007	1	15620	15620		1.4819	0.28856	1	11694000	+		35756	19556	26202	26390	34776	34776					0.0707896827627792
MFLSEFETF	9	Unmodified	_MFLSEFETF_					0	0	0			REV__ENST00000438503.1_1_2:149627595-149627934:-|nuORF	REV__ENST00000438503.1_1_2:149627595-149627934:-|nuORF	MSMS	A375_MHC_IP_R2	2	575.692138671875	2	575.759901	1149.50525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.24	1	44.013	43.513	44.513	0.7724								0	0	0	0.1535	1	16106	16106		15.847	0	1		+		35757	24785	26203	26391	34777	34777					-0.06352431622508448
MFLSFPTTK	9	Oxidation (M)	_M(Oxidation (M))FLSFPTTK_		M(1)FLSFPTTK		M(150)FLSFPTTK	0	0	1		CON__P01966;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;ENST00000487791.1_1_16:226802-227261:+|nuORF	CON__P01966;ENSG00000206172|ENST00000320868|HBA1	CON__P01966	MULTI-MSMS	A375_MHC_IP_R1	1	544.2125244140625	2	544.27826	1086.54197	-0.56125	-0.00030547	-0.24814	-0.00013506	-0.80939	-0.00044053	544.278151525732	74.985	1.1103	74.985	74.653	75.764	0					68	21	4	0	0	0	0.0014143	1	27397	27397		149.91	61.01	1	77799000		+	35758	579;8913	26204	26392	34778	34778		2			0.0021586499406112125
MFLSFPTTK	9	Oxidation (M)	_M(Oxidation (M))FLSFPTTK_		M(1)FLSFPTTK		M(150)FLSFPTTK	0	0	1		CON__P01966;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;ENST00000487791.1_1_16:226802-227261:+|nuORF	CON__P01966;ENSG00000206172|ENST00000320868|HBA1	CON__P01966	MULTI-MSMS	A375_MHC_IP_R2	2	544.715576171875	2	544.27826	1086.54197	-0.83535	-0.00045466	0.046165	2.5127E-05	-0.78918	-0.00042953	544.2783339894182	74.262	1.1185	74.999	74.553	75.671	0.73752					81	21	5	0	0	0	0.0014143	1	28160	28160		149.91	81.833	1	74922000		+	35759	579;8913	26204	26392	34779	34779		2			0.0021586499406112125
MFLVNSFLKG	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MFLVNSFLKG_					1	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	MULTI-MSMS	A375_MHC_IP_R1	1	599.7203369140625	2	599.32046	1196.62637	-0.71583	-0.00042901	0.78551	0.00047078	0.069686	4.1764E-05	599.3208369306468	138.71	0.35191	138.71	138.56	138.91	0					12	6	3	0	0	0	0.064809	1	53355	53355		71.708	37.605	1	3232700			35760	4032	26205	26393	34780	34780					0.035918158108188436
MFLVNSFLKG	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MFLVNSFLKG_					1	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	MULTI-MSMS	A375_MHC_IP_R2	2	599.7201538085938	2	599.32046	1196.62637	-0.33696	-0.00020195	-0.31522	-0.00018892	-0.65218	-0.00039087	599.3202707730869	138.62	0.30421	138.7	138.57	138.87	0.083954					12	5	3	0	0	0	0.056042	1	54367	54367		74.2	40.097	1	2676700			35761	4032	26205	26393	34781	34781					0.035918158108188436
MFNGLIYLN	9	Unmodified	_MFNGLIYLN_					0	0	0			REV__nc|ENSG00000187021|P54315-2|PNLIPRP1	REV__nc|ENSG00000187021|P54315-2|PNLIPRP1	MSMS	A375_MHC_IP_R1	1	542.6905517578125	2	542.778428	1083.5423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.913	1	84.913	84.413	85.413	0								0	0	0	0.1499	1	31112	31112		21.747	4.6338	1		+		35762	27424	26206	26394	34782	34782					0.00387284713929148
MFSNDPTHP	9	Unmodified	_MFSNDPTHP_					0	0	0			REV__ENSG00000167889|ENST00000569840|MGAT5B	REV__ENSG00000167889|ENST00000569840|MGAT5B	MSMS	A375_MHC_IP_R2	2	523.199951171875	2	523.224017	1044.43348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.82	1	143.85	143.35	144.35	0.024414								0	0	0	0.15486	1	56197	56197		4.3292	1.7518	1		+		35763	20802	26207	26395	34783	34783					-0.08695926256359598
MFYTQMKQT	9	Unmodified	_MFYTQMKQT_					0	0	0		ENST00000587757.5_1_18:13611494-13611524:+|nuORF	ENST00000587757.5_1_18:13611494-13611524:+|nuORF	ENST00000587757.5_1_18:13611494-13611524:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	588.4857177734375	2	589.272652	1176.53075	-0.66425	-0.00039143	0.60864	0.00035865	-0.055614	-3.2772E-05	589.2726585607729	55.649	0.45558	56.4	56.187	56.642	0.75075					10	8	2	0	0	0	0.73363	1	21109	21109		15.847	5.7733	1	812210			35764	13750	26208	26396	34784	34784					-0.05045280371723493
MGCFTFLGV	9	Unmodified	_MGCFTFLGV_					0	0	0		ENSG00000174482|ENST00000698399|LINGO2	ENSG00000174482|ENST00000698399|LINGO2	ENSG00000174482|ENST00000698399|LINGO2	MULTI-MSMS	A375_MHC_IP_R1	1	488.1281433105469	2	487.727349	973.440145	-0.23882	-0.00011648	0.75023	0.00036591	0.51142	0.00024943	487.7280819803394	103.99	0.61095	103.99	103.63	104.24	0					18	11	2	0	0	0	0.1209	1	38181	38181		46.921	10.877	1	1851200			35765	7885	26209	26397	34785	34785					-0.047637046293516505
MGCWSIEHV	9	Unmodified	_MGCWSIEHV_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MSMS	A375_MHC_IP_R2	2	531.2310791015625	2	531.230787	1060.44702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.536	1	64.276	63.776	64.776	0.74022								0	0	0	0.15486	1	24088	24088		12.532	3.1841	1				35766	1997	26210	26398	34786	34786					-0.08078391748790636
MGESYFTTV	9	Unmodified	_MGESYFTTV_					0	0	0			REV__nc|ENSG00000186335|Q495M3-3|SLC36A2	REV__nc|ENSG00000186335|Q495M3-3|SLC36A2	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1681518554688	2	517.7286	1033.44265	-0.90024	-0.00046608	-4.069	-0.0021066	-4.9692	-0.0025727	518.2272602899425	97.208	1.3174	97.963	97.216	98.534	0.75586					29	25	2	0	0	0	0.71541	1	37055	37055		7.2892	5.445	1	935430	+		35767	18256	26211	26399	34787	34787					-0.07273577690693855
MGFGGGCG	8	Unmodified	_MGFGGGCG_					0	0	0			REV__ENST00000529511.2_1_11:84256393-84256642:-|nuORF	REV__ENST00000529511.2_1_11:84256393-84256642:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	685.2953491210938	1	685.243243	684.235966	-0.59899	-0.00041045	-3.3406	-0.0022891	-3.9396	-0.0026996	685.2377394269521	101.81	0.25671	102.58	102.41	102.67	0.76428					6	4	2	0	0	0	0.972	1	38605	38605		0	0	1	647370	+		35768	25824	26212	26400	34788	34788					-0.11878223999997317
MGHDGPCG	8	Unmodified	_MGHDGPCG_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-MSMS	A375_MHC_IP_R1	1	773.6741943359375	1	773.27052	772.263244	-0.66446	-0.00051381	2.0846	0.0016119	1.4201	0.0010981	773.2745340530811	8.2412	0.38714	8.2412	8.0769	8.464	0					79	58	2	0	0	0	0.77861	1	1883	1883		0	0	1	124670	+		35769	16766	26213	26401	34789	34789					-0.13199740459606346
MGHDGPCG	8	Unmodified	_MGHDGPCG_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-MSMS	A375_MHC_IP_R1	1	773.673828125	1	773.27052	772.263244	-0.66448	-0.00051382	2.2833	0.0017656	1.6189	0.0012518	773.2743184304916	9.6314	0.20172	9.6314	9.4906	9.6923	0					46	29	2	0	0	0	0.77861	1	2189	2189		0	0	1	131540	+		35770	16766	26213	26401	34790	34790					-0.13199740459606346
MGHDGPCG	8	Unmodified	_MGHDGPCG_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-MSMS	A375_MHC_IP_R1	1	773.6738891601562	1	773.27052	772.263244	-0.66459	-0.00051391	3.1041	0.0024003	2.4395	0.0018864	773.2749585325246	18.999	0.10736	18.999	18.944	19.051	0					13	12	2	0	0	0	0.77861	1	4564	4564		0	0	1	128440	+		35771	16766	26213	26401	34791	34791					-0.13199740459606346
MGHDGPCG	8	Unmodified	_MGHDGPCG_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-SECPEP	A375_MHC_IP_R1	1	772.6728515625	1	773.27052	772.263244	-0.66446	-0.00051381	2.0846	0.0016119	1.4201	0.0010981	773.2745340530811	8.2412	0.38714	8.2412	8.0769	8.464	0					79	58	2	0	0	0	0.972	1	1913	1913		0	0	1	124670	+		35772	16766	26213	26401	34792	34792					-0.13199740459606346
MGHDGPCG	8	Unmodified	_MGHDGPCG_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-SECPEP	A375_MHC_IP_R1	1	772.6731567382812	1	773.27052	772.263244	-0.66449	-0.00051383	2.7247	0.0021069	2.0602	0.0015931	773.2747907337599	7.2377	0.19613	7.2377	7.1446	7.3407	0					51	29	2	0	0	0	0.972	1	1669	1669		0	0	1	121700	+		35773	16766	26213	26401	34793	34793					-0.13199740459606346
MGHDGPCG	8	Unmodified	_MGHDGPCG_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-SECPEP	A375_MHC_IP_R1	1	772.67333984375	1	773.27052	772.263244	-0.66444	-0.00051379	2.1848	0.0016895	1.5204	0.0011757	773.27439685867	11.466	0.22648	11.466	11.269	11.495	0					59	34	2	0	0	0	0.972	1	2626	2626		0	0	1	92293	+		35774	16766	26213	26401	34794	34794					-0.13199740459606346
MGHDGPCG	8	Unmodified	_MGHDGPCG_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-SECPEP	A375_MHC_IP_R1	1	772.6731567382812	1	773.27052	772.263244	-0.66449	-0.00051383	2.5928	0.0020049	1.9283	0.0014911	773.2745169241365	12.968	0.18921	12.968	12.869	13.058	0					47	28	2	0	0	0	0.972	1	2989	2989		0	0	1	106470	+		35775	16766	26213	26401	34795	34795					-0.13199740459606346
MGHDGPCG	8	Unmodified	_MGHDGPCG_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-SECPEP	A375_MHC_IP_R1	1	772.6737670898438	1	773.27052	772.263244	-0.66443	-0.00051378	2.5149	0.0019447	1.8505	0.0014309	773.2747200541031	7.7674	0.21535	7.7674	7.6282	7.8435	0					47	30	2	0	0	0	0.972	1	1793	1793		0	0	1	105260	+		35776	16766	26213	26401	34796	34796					-0.13199740459606346
MGHDGPCG	8	Unmodified	_MGHDGPCG_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-SECPEP	A375_MHC_IP_R1	1	773.6744384765625	1	773.27052	772.263244	-0.66449	-0.00051383	3.0143	0.0023309	2.3498	0.001817	773.2748490835717	14.844	0.22827	14.844	14.711	14.939	0					52	34	2	0	0	0	0.972	1	3428	3428		0	0	1	127250	+		35777	16766	26213	26401	34797	34797					-0.13199740459606346
MGHDGPCG	8	Unmodified	_MGHDGPCG_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-SECPEP	A375_MHC_IP_R1	1	772.673095703125	1	773.27052	772.263244	-0.66441	-0.00051377	2.3944	0.0018515	1.73	0.0013378	773.2745910734295	5.1736	0.14554	5.1736	5.129	5.2746	0					33	20	2	0	0	0	0.972	1	1197	1197		0	0	1	100320	+		35778	16766	26213	26401	34798	34798					-0.13199740459606346
MGHDGPCG	8	Unmodified	_MGHDGPCG_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-SECPEP	A375_MHC_IP_R2	2	772.6728515625	1	773.27052	772.263244	-1.206	-0.00093255	2.6959	0.0020847	1.49	0.0011521	773.274528490162	6.5935	0.21388	7.0086	6.9457	7.1595	0.4151					40	27	2	0	0	0	0.972	1	2118	2118		0	0	1	92606	+		35779	16766	26213	26401	34799	34799					-0.13199740459606346
MGHDGPCG	8	Unmodified	_MGHDGPCG_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-SECPEP	A375_MHC_IP_R2	2	772.6736450195312	1	773.27052	772.263244	-1.2059	-0.00093247	3.0327	0.0023451	1.8268	0.0014126	773.2747859640851	2.9173	0.23186	3.3532	3.2476	3.4794	0.43585					40	30	2	0	0	0	0.972	1	933	933		0	0	1	111830	+		35780	16766	26213	26401	34800	34800					-0.13199740459606346
MGHDGPCG	8	Unmodified	_MGHDGPCG_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-SECPEP	A375_MHC_IP_R2	2	772.6729736328125	1	773.27052	772.263244	-1.2059	-0.00093249	3.1478	0.0024341	1.9419	0.0015016	773.2747788705062	1.0185	0.13781	1.4889	1.3855	1.5233	0.47044					23	15	2	0	0	0	0.972	1	338	338		0	0	1	91706	+		35781	16766	26213	26401	34801	34801					-0.13199740459606346
MGHDGPCG	8	Unmodified	_MGHDGPCG_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	773.27052	772.263244	-0.66448	-0.00051382	2.2833	0.0017656	1.6189	0.0012518	773.2743184304916	9.6314	0.20172	9.6314	9.4906	9.6923	0	-0.16172	-0.00031128	NaN	0	46	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131540	+		35782	16766	26213	26401							-0.13199740459606346
MGHDGPCG	8	Unmodified	_MGHDGPCG_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	773.27052	772.263244	-0.66459	-0.00051391	3.1041	0.0024003	2.4395	0.0018864	773.2749585325246	18.999	0.10736	18.999	18.944	19.051	0	-0.12366	-0.00023637	NaN	0	13	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128440	+		35783	16766	26213	26401							-0.13199740459606346
MGHDGPCG	8	Unmodified	_MGHDGPCG_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-MATCH	A375_MHC_IP_R2	2		1	773.27052	772.263244	-1.2062	-0.00093271	2.6194	0.0020255	1.4132	0.0010928	773.275061613774	4.8494	0.040408	5.2663	5.2389	5.2793	0.41691	0.046396	0.00013584	NaN	0	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80363	+		35784	16766	26213	26401							-0.13199740459606346
MGHDGPCG	8	Unmodified	_MGHDGPCG_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-MATCH	A375_MHC_IP_R2	2		1	773.27052	772.263244	-1.206	-0.00093257	3.0239	0.0023383	1.8179	0.0014057	773.2748473203351	9.5078	0.30729	9.9548	9.805	10.112	0.44698	0.16172	0.00026138	NaN	0	53	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106340	+		35785	16766	26213	26401							-0.13199740459606346
MGHDGPCG	8	Unmodified	_MGHDGPCG_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-MATCH	A375_MHC_IP_R2	2		1	773.27052	772.263244	-1.2061	-0.00093264	2.9336	0.0022685	1.7275	0.0013359	773.2751715578079	7.0078	0.16001	7.4229	7.3207	7.4807	0.4151	0.092587	0.00010667	NaN	0	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78144	+		35786	16766	26213	26401							-0.13199740459606346
MGIFYLIF	8	Unmodified	_MGIFYLIF_					0	0	0			REV__ENSG00000121318|ENST00000240619|TAS2R10	REV__ENSG00000121318|ENST00000240619|TAS2R10	MULTI-MSMS	A375_MHC_IP_R2	2	502.192626953125	2	502.269707	1002.52486	-0.6575	-0.00033024	-0.23501	-0.00011804	-0.89251	-0.00044828	502.26715265740364	74.372	0.35718	75.11	74.958	75.315	0.73752					9	6	2	0	0	0	0.76194	1	28192	28192		17.087	0.14425	1	406630	+		35787	18157	26214	26402	34802	34802					0.023699891789306093
MGLDHADQP	9	Unmodified	_MGLDHADQP_					0	0	0			REV__ENSG00000171872|ENST00000372299|KLF17	REV__ENSG00000171872|ENST00000372299|KLF17	MULTI-MSMS	A375_MHC_IP_R2	2	492.6426696777344	2	492.216192	982.41783	-1.1287	-0.00055556	-2.1643	-0.0010653	-3.293	-0.0016209	492.21483491565203	29.562	0.30007	30.261	30.185	30.485	0.69872					6	5	2	0	0	0	0.27715	1	10314	10314		32.305	3.8186	1	1118600	+		35788	21104	26215	26403	34803	34803					-0.07408212773418654
MGQIQHPEL	9	Unmodified	_MGQIQHPEL_					0	0	0			REV__ENSG00000125633|ENST00000376300|CCDC93	REV__ENSG00000125633|ENST00000376300|CCDC93	MULTI-SECPEP	A375_MHC_IP_R2	2	527.1937255859375	2	526.763309	1051.51206	-0.64547	-0.00034001	-1.2564	-0.00066181	-1.9018	-0.0010018	527.2643921164512	40.74	0.30634	41.515	41.386	41.692	0.77451					7	5	2	0	0	0	0.69507	1	15093	15093		19.257	12.534	1	573510	+		35789	18353	26216	26404	34804	34804					-0.011630739512838772
MGQIQHPEL	9	Unmodified	_MGQIQHPEL_					0	0	0			REV__ENSG00000125633|ENST00000376300|CCDC93	REV__ENSG00000125633|ENST00000376300|CCDC93	MULTI-MATCH	A375_MHC_IP_R1	1		2	526.763309	1051.51206	-0.84034	-0.00044266	-1.4237	-0.00074996	-2.264	-0.0011926	526.7623662624766	41.611	0.25451	41.611	41.419	41.674	0	0.048051	-7.3377E-05	NaN	19.257	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1010000	+		35790	18353	26216	26404							-0.011630739512838772
MGRTPIWRL	9	Unmodified	_MGRTPIWRL_					0	0	0		ENST00000558230.1_1_15:48936863-48936899:-|nuORF	ENST00000558230.1_1_15:48936863-48936899:-|nuORF	ENST00000558230.1_1_15:48936863-48936899:-|nuORF	MSMS	A375_MHC_IP_R1	1	377.2731628417969	3	377.214816	1128.62262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.253	1	59.253	58.753	59.753	0								0	0	0	0.15486	1	21309	21309		10.8	2.3552	1				35791	13464	26217	26405	34805	34805					0.06345190827619263
MGRYLGTI	8	Unmodified	_MGRYLGTI_					0	0	0			REV__ENST00000440964.1_1_3:48895145-48933199:-|nuORF	REV__ENST00000440964.1_1_3:48895145-48933199:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	456.14410400390625	2	455.744388	909.474223	-0.27535	-0.00012549	-0.48101	-0.00021922	-0.75636	-0.00034471	455.7441824008295	64.267	0.45628	64.267	64.141	64.597	0					13	8	2	0	0	0	0.9187	1	23281	23281		19.257	3.4098	1	1696700	+		35792	21508	26218	26406	34806	34806					0.01586459853933775
MGVECQHDEY	10	Unmodified	_MGVECQHDEY_					0	0	0			REV__nc|ENSG00000106633|P35557-3|GCK	REV__nc|ENSG00000106633|P35557-3|GCK	MULTI-MSMS	A375_MHC_IP_R1	1	606.12841796875	2	605.728806	1209.44306	-0.32071	-0.00019426	-0.34128	-0.00020672	-0.66198	-0.00040098	605.7287105907684	25.261	0.40648	25.261	25.104	25.511	0					21	7	4	0	0	0	0.36703	1	7357	7357		36.127	2.0246	1	13081000	+		35793	17458	26219	26407	34807	34807					-0.15328526033135859
MGYAPVPPPT	10	Unmodified	_MGYAPVPPPT_					0	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;ENST00000563441.5_1_15:75651254-75660924:-|nuORF;ENST00000567163.5_1_15:75651578-75652319:-|nuORF;ENST00000563368.5_1_15:75650962-75652298:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-MSMS	A375_MHC_IP_R2	2	515.6626586914062	2	515.257328	1028.5001	-0.82914	-0.00042722	4.3768	0.0022552	3.5476	0.0018279	515.2630674916811	74.782	0.45668	75.519	75.264	75.721	0.73752					22	8	4	0	0	0	0.63639	1	28387	28387		18.146	1.2041	1	2786800			35794	5152	26220	26408	34808	34808					-0.013006906944610819
MGYDLTFWY	9	Unmodified	_MGYDLTFWY_					0	0	0		ENST00000475659.1_1_1:197237491-197326220:+|nuORF	ENST00000475659.1_1_1:197237491-197326220:+|nuORF	ENST00000475659.1_1_1:197237491-197326220:+|nuORF	MSMS	A375_MHC_IP_R1	1	598.2113647460938	2	598.260068	1194.50558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.15	1	103.15	102.65	103.65	0								0	0	0	0.15486	1	37904	37904		8.5933	0	1				35795	12423	26221	26409	34809	34809					-0.08389011902659149
MGYRITGL	8	Unmodified	_MGYRITGL_					0	0	0		nc|ENSG00000142784|Q8N5D0-4|WDTC1;ENSG00000142784|ENST00000319394|WDTC1	nc|ENSG00000142784|Q8N5D0-4|WDTC1	nc|ENSG00000142784|Q8N5D0-4|WDTC1	MULTI-SECPEP	A375_MHC_IP_R2	2	456.1439514160156	2	455.744388	909.474223	-0.16413	-7.4801E-05	-1.2513	-0.00057027	-1.4154	-0.00064507	455.7439608822744	63.476	0.45848	64.217	63.987	64.446	0.74022					15	8	2	0	0	0	0.77651	1	24077	24077		26.884	9.9414	1	2201700			35796	5331	26222	26410	34810	34810					0.015864598539110375
MHCPLAGPFT	10	Unmodified	_MHCPLAGPFT_					0	0	0			REV__ENSG00000117983|ENST00000529681|MUC5B	REV__ENSG00000117983|ENST00000529681|MUC5B	MULTI-SECPEP	A375_MHC_IP_R1	1	536.6710815429688	2	537.24898	1072.48341	-0.59126	-0.00031765	-0.36734	-0.00019735	-0.9586	-0.00051501	537.2483338921568	62.816	0.56416	62.816	62.557	63.121	0					20	10	3	0	0	0	0.83086	1	22634	22634		15.847	8.558	1	1023500	+		35797	18026	26223	26411	34811	34811					-0.04993514852048975
MHCSCLAEGI	10	Unmodified	_MHCSCLAEGI_					0	0	0		ENSG00000253831|ENST00000454449|ETV3L	ENSG00000253831|ENST00000454449|ETV3L	ENSG00000253831|ENST00000454449|ETV3L	MSMS	A375_MHC_IP_R2	2	532.1842651367188	2	532.222105	1062.42966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.035	1	97.791	97.291	98.291	0.75586								0	0	0	0.15308	1	36833	36833		10.824	1.4765	1				35798	9869	26224	26412	34812	34812					-0.09906055346073117
MHRVSVILKL	10	Unmodified	_MHRVSVILKL_					0	0	0		ENST00000512584.5_1_4:156828908-156831355:+|nuORF;ENSG00000151790|ENST00000536354|TDO2	ENST00000512584.5_1_4:156828908-156831355:+|nuORF	ENST00000512584.5_1_4:156828908-156831355:+|nuORF	MSMS	A375_MHC_IP_R1	1	399.65081787109375	3	399.249638	1194.72708	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.769	1	15.769	15.269	16.269	0								0	0	0	0.15637	1	3647	3647		0.15932	0.064481	1				35799	5928	26225	26413	34813	34813					0.13750892584334906
MHSFPLQF	8	Unmodified	_MHSFPLQF_					0	0	0		ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	MSMS	A375_MHC_IP_R1	1	503.70611572265625	2	503.744388	1005.47422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.41	1	109.41	108.91	109.91	0								0	0	0	0.16876	1	40129	40129		18.135	0	1				35800	4957	26226	26414	34814	34814					-0.028295401460809444
MHSSSPGH	8	Unmodified	_MHSSSPGH_					0	0	0			REV__ENST00000602506.5_1_16:67760333-67793575:-|nuORF	REV__ENST00000602506.5_1_16:67760333-67793575:-|nuORF	MSMS	A375_MHC_IP_R2	2	420.1239318847656	2	420.176869	838.339186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.66	1	104.43	103.93	104.93	0.76428								0	0	0	0.16876	1	39249	39249		5.7604	0	1		+		35801	19244	26227	26415	34815	34815					-0.0864502028782681
MIAKTITAI	9	Unmodified	_MIAKTITAI_					0	0	0		ENST00000406156.2_1_6:121975405-121975696:+|nuORF	ENST00000406156.2_1_6:121975405-121975696:+|nuORF	ENST00000406156.2_1_6:121975405-121975696:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	481.169189453125	2	481.291171	960.567789	-0.50198	-0.0002416	-1.5687	-0.00075502	-2.0707	-0.00099662	481.29043719202804	83.938	0.25795	84.678	84.508	84.766	0.73962					6	4	2	0	0	0	0.60623	1	31882	31882		14.582	2.0501	1	452070			35802	11600	26228	26416	34816	34816					0.08592759236330494
MIALLLWRPRA	11	Unmodified	_MIALLLWRPRA_					0	0	0		nc|ENSG00000112494|Q86WB7-2|UNC93A;ENSG00000112494|ENST00000230256|UNC93A	nc|ENSG00000112494|Q86WB7-2|UNC93A	nc|ENSG00000112494|Q86WB7-2|UNC93A	MULTI-MSMS	A375_MHC_IP_R2	2	447.4990234375	3	447.272554	1338.79583	-0.15905	-7.1137E-05	0.77931	0.00034856	0.62026	0.00027743	447.2728018961277	137.09	2.4393	137.2	136.86	139.3	0.11134					107	47	3	0	0	0	0.73924	1	54298	54298		0.094841	0.094841	1	35363000			35803	3090	26229	26417	34817	34817					0.1399855688405296
MIDVTKSYY	9	Oxidation (M)	_M(Oxidation (M))IDVTKSYY_		M(1)IDVTKSYY		M(59)IDVTKSYY	0	0	1		ENSG00000166847|ENST00000300087|DCTN5;ENST00000566053.5_1_16:23652819-23678462:+|nuORF	ENSG00000166847|ENST00000300087|DCTN5	ENSG00000166847|ENST00000300087|DCTN5	MULTI-MSMS	A375_MHC_IP_R1	1	568.6703491210938	2	568.270632	1134.52671	0.11695	6.6459E-05	-1.0079	-0.00057275	-0.89093	-0.00050629	568.2700226573387	48.759	0.85941	48.759	48.375	49.235	0					26	16	2	0	0	0	0.062639	1	17192	17192		59.368	30.287	1	2456500			35804	7117	26230	26418	34818	34818		362			-0.03517046593765372
MIDVTKSYY	9	Oxidation (M)	_M(Oxidation (M))IDVTKSYY_		M(1)IDVTKSYY		M(50)IDVTKSYY	0	0	1		ENSG00000166847|ENST00000300087|DCTN5;ENST00000566053.5_1_16:23652819-23678462:+|nuORF	ENSG00000166847|ENST00000300087|DCTN5	ENSG00000166847|ENST00000300087|DCTN5	MULTI-MSMS	A375_MHC_IP_R2	2	568.6705932617188	2	568.270632	1134.52671	-0.2703	-0.0001536	-1.0817	-0.00061471	-1.352	-0.00076831	568.2705870916534	48.022	0.95793	48.784	48.378	49.336	0.76128					33	18	3	0	0	0	0.10637	2	18031	18031;18076		49.527	26.379	1	2711100			35805	7117	26230	26418	34819;34820	34819		362			-0.03517046593765372
MIDVTKSYY	9	Unmodified	_MIDVTKSYY_					0	0	0		ENSG00000166847|ENST00000300087|DCTN5;ENST00000566053.5_1_16:23652819-23678462:+|nuORF	ENSG00000166847|ENST00000300087|DCTN5	ENSG00000166847|ENST00000300087|DCTN5	MULTI-SECPEP	A375_MHC_IP_R1	1	560.6729125976562	2	560.273175	1118.5318	-0.50399	-0.00028237	-0.15772	-8.8364E-05	-0.66171	-0.00037074	560.2731244296593	60.716	0.61071	60.716	60.312	60.922	0					21	11	2	0	0	0	0.14273	1	21842	21842		74.2	22.57	1	6067100			35806	7117	26230	26419	34821	34821					-0.022727427311565407
MIDVTKSYY	9	Unmodified	_MIDVTKSYY_					0	0	0		ENSG00000166847|ENST00000300087|DCTN5;ENST00000566053.5_1_16:23652819-23678462:+|nuORF	ENSG00000166847|ENST00000300087|DCTN5	ENSG00000166847|ENST00000300087|DCTN5	MULTI-MSMS	A375_MHC_IP_R2	2	560.196044921875	2	560.273175	1118.5318	-0.98814	-0.00055363	-0.036362	-2.0372E-05	-1.0245	-0.000574	560.2730871667901	60.031	0.76055	60.778	60.299	61.059	0.74714					25	14	2	0	0	0	0.39434	1	22647	22647		24.991	11.085	1	7504400			35807	7117	26230	26419	34822	34822					-0.022727427311565407
MIELTKLLKIW	11	Unmodified	_MIELTKLLKIW_					0	0	0		nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-MSMS	A375_MHC_IP_R2	2	463.6836242675781	3	463.284236	1386.83088	-0.47282	-0.00021905	-0.9175	-0.00042506	-1.3903	-0.00064411	463.28382298305013	133.57	0.45534	133.73	133.5	133.96	0.16487					17	8	3	0	0	0	0.73886	1	52577	52577		0.45452	0.31463	1	2973800			35808	5625	26231	26420	34823	34823					0.15293754901335888
MIEPRTLQY	9	Oxidation (M)	_M(Oxidation (M))IEPRTLQY_		M(1)IEPRTLQY		M(58)IEPRTLQY	0	0	1		ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	A375_MHC_IP_R1	1	583.7218627929688	2	583.797349	1165.58014	-0.17556	-0.00010249	-0.11556	-6.7462E-05	-0.29111	-0.00016995	583.7971367130145	57.043	0.76521	57.043	56.599	57.364	0					19	14	2	0	0	0	0.066859	1	20401	20401		57.722	15.627	1	3465600			35809	2573	26232	26421	34824	34824		116			0.0039775090874627494
MIEPRTLQY	9	Oxidation (M)	_M(Oxidation (M))IEPRTLQY_		M(1)IEPRTLQY		M(81)IEPRTLQY	0	0	1		ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-SECPEP	A375_MHC_IP_R1	1	584.1976928710938	2	583.797349	1165.58014	0.048218	2.815E-05	-0.3697	-0.00021583	-0.32149	-0.00018768	583.7971037469537	47.938	1.8184	47.938	47.416	49.235	0					94	35	3	0	0	0	0.076731	1	16811	16811		80.676	44.549	1	20069000			35810	2573	26232	26421	34825	34825		116			0.0039775090874627494
MIEPRTLQY	9	Oxidation (M)	_M(Oxidation (M))IEPRTLQY_		M(1)IEPRTLQY		M(56)IEPRTLQY	0	0	1		ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-SECPEP	A375_MHC_IP_R2	2	584.1968383789062	2	583.797349	1165.58014	-0.70881	-0.0004138	-0.31887	-0.00018616	-1.0277	-0.00059996	583.7970606614084	56.19	0.51022	56.94	56.693	57.203	0.75014					15	9	2	0	0	0	0.23894	1	21271	21271		55.503	13.663	1	5507900			35811	2573	26232	26421	34826	34826		116			0.0039775090874627494
MIEPRTLQY	9	Oxidation (M)	_M(Oxidation (M))IEPRTLQY_		M(1)IEPRTLQY		M(64)IEPRTLQY	0	0	1		ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-SECPEP	A375_MHC_IP_R2	2	584.197265625	2	583.797349	1165.58014	-0.31397	-0.0001833	-0.20549	-0.00011997	-0.51947	-0.00030326	583.7971494681802	47.426	2.3856	48.187	47.613	49.999	0.76128					115	46	3	0	0	0	0.10362	1	18139	18139		63.961	25.785	1	18001000			35812	2573	26232	26421	34827	34827		116			0.0039775090874627494
MIEPRTLQY	9	Oxidation (M)	_M(Oxidation (M))IEPRTLQY_		M(1)IEPRTLQY		M(100)IEPRTLQY	0	0	1		ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-SECPEP	A375_MHC_IP_R2	2	584.0953979492188	2	583.797349	1165.58014	-0.36597	-0.00021365	0.14665	8.5613E-05	-0.21932	-0.00012804	583.7974463598468	46.015	1.0648	46.78	46.552	47.617	0.76519					50	20	3	0	0	0	0.01147	1	17223	17223		100.09	61.915	1	64050000			35813	2573	26232	26421	34828	34828		116			0.0039775090874627494
MIEPRTLQY	9	Unmodified	_MIEPRTLQY_					0	0	0		ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-SECPEP	A375_MHC_IP_R1	1	576.199951171875	2	575.799891	1149.58523	-0.11807	-6.7987E-05	-0.39237	-0.00022593	-0.51045	-0.00029392	575.7997716480045	56.985	0.81631	56.985	56.599	57.415	0					52	15	5	0	0	0	0.016541	1	20408	20408		117.76	59.082	1	51979000			35814	2573	26232	26422	34829	34829					0.01642054771355106
MIEPRTLQY	9	Unmodified	_MIEPRTLQY_					0	0	0		ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-SECPEP	A375_MHC_IP_R2	2	576.1995849609375	2	575.799891	1149.58523	-0.46089	-0.00026538	-0.51735	-0.00029789	-0.97824	-0.00056327	575.7996844007331	56.23	0.76637	56.98	56.642	57.408	0.75014					46	14	5	0	0	0	0.013591	1	21210	21210		106.94	52.167	1	58581000			35815	2573	26232	26422	34830	34830					0.01642054771355106
MIFCRNDY	8	Unmodified	_MIFCRNDY_					0	0	0		LMO4|p.L72F|1|0.41|ENSG00000143013|chr1:87332229-87332229|C/T|missense_variant	LMO4|p.L72F|1|0.41|ENSG00000143013|chr1:87332229-87332229|C/T|missense_variant	LMO4|p.L72F|1|0.41|ENSG00000143013|chr1:87332229-87332229|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	531.6309814453125	2	531.230787	1060.44702	-0.54197	-0.00028791	0.87419	0.0004644	0.33222	0.00017649	531.2312358947243	102.06	0.35543	102.06	101.9	102.25	0					11	6	2	0	0	0	0.77488	1	37517	37517		13.508	3.3245	1	1790400			35816	14303	26233	26423	34831	34831					-0.08078391748790636
MIFPRKRTLYS	11	Unmodified	_MIFPRKRTLYS_					0	0	0		ENST00000486738.5_1_X:153608322-153609415:+|nuORF;ENST00000494443.5_1_X:153608322-153608766:+|nuORF;ENST00000369835.3_1_X:153608334-153608692:+|nuORF	ENST00000486738.5_1_X:153608322-153609415:+|nuORF	ENST00000486738.5_1_X:153608322-153609415:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	706.4745483398438	2	706.397564	1410.78058	-0.8633	-0.00060983	0.86764	0.0006129	0.0043424	3.0675E-06	706.3981947318176	133.84	1.0151	133.84	133.41	134.42	0					46	19	4	0	0	0	0.99955	1	51806	51806		1.1933	0	1	6689000			35817	12586	26234	26424	34832	34832					0.09161645296217102
MIGGTIWKI	9	Unmodified	_MIGGTIWKI_					0	0	0		CPSF2|p.L682Vfs*4|1|0.2|ENSG00000165934|chr14:92159204-92159205|TC/-|frameshift_variant;ENSG00000165934|ENST00000298875|CPSF2	CPSF2|p.L682Vfs*4|1|0.2|ENSG00000165934|chr14:92159204-92159205|TC/-|frameshift_variant	CPSF2|p.L682Vfs*4|1|0.2|ENSG00000165934|chr14:92159204-92159205|TC/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	1017.8986206054688	1	1018.5754	1017.56812	0.22477	0.00022894	-1.106	-0.0011265	-0.88118	-0.00089755	1018.5753336105929	114.55	2.3819	115.24	114.11	116.49	0.68999					80	46	3	0	0	0	0.67221	1	43013	43013		4.756	4.756	1	19132000			35818	651	26235	26425	34833	34833					0.06004178956186479
MIGWGTCGL	9	Unmodified	_MIGWGTCGL_					0	0	0		ENST00000263674.3_1_11:73078903-73079227:+|nuORF	ENST00000263674.3_1_11:73078903-73079227:+|nuORF	ENST00000263674.3_1_11:73078903-73079227:+|nuORF	MSMS	A375_MHC_IP_R2	2	469.1648864746094	2	469.217149	936.419744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.89	1	101.66	101.16	102.16	0.76278								0	0	0	0.15283	1	38249	38249		16.942	0	1				35819	10322	26236	26426	34834	34834					-0.05100875289133455
MIHHLNSPHGQ	11	Unmodified	_MIHHLNSPHGQ_					0	0	0			REV__nc|ENSG00000136715|Q9H0E3|SAP130	REV__nc|ENSG00000136715|Q9H0E3|SAP130	MSMS	A375_MHC_IP_R1	1	424.2622985839844	3	424.208501	1269.60367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.133	1	33.133	32.633	33.633	0								0	0	0	0.15837	1	10782	10782		8.7518	0	1		+		35820	18953	26237	26427	34835	34835					-0.020343905340723722
MIIIFQHY	8	Unmodified	_MIIIFQHY_					0	0	0			REV__ENSG00000128833|ENST00000261839|MYO5C	REV__ENSG00000128833|ENST00000261839|MYO5C	MSMS	A375_MHC_IP_R2	2	355.5794677734375	3	355.524767	1063.55247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.661	1	32.398	31.898	32.898	0.73692								0	0	0	0.16876	1	11208	11208		3.5965	1.3137	1		+		35821	18471	26238	26428	34836	34836					0.023238924391534965
MIIRYHLLHCI	11	Unmodified	_MIIRYHLLHCI_					0	0	0			REV__OR7E24|p.P147L|1|0.15|ENSG00000237521|chr19:9251483-9251483|C/T|missense_variant	REV__OR7E24|p.P147L|1|0.15|ENSG00000237521|chr19:9251483-9251483|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	706.4005737304688	2	706.388685	1410.76282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.94	1	103.94	103.44	104.44	0								0	0	0	0.1629	1	38169	38169		3.5965	0.0094347	1		+		35822	27699	26239	26429	34837	34837					0.07386606769705395
MIKEEMVQLR	10	Unmodified	_MIKEEMVQLR_					0	0	0		CCDC146|p.E620K|1|0.51|ENSG00000135205|chr7:77280592-77280592|G/A|missense_variant	CCDC146|p.E620K|1|0.51|ENSG00000135205|chr7:77280592-77280592|G/A|missense_variant	CCDC146|p.E620K|1|0.51|ENSG00000135205|chr7:77280592-77280592|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	425.61590576171875	3	426.229914	1275.66791	-0.47253	-0.0002014	0.29423	0.00012541	-0.17829	-7.5994E-05	426.2299536063635	19.519	0.6579	20.129	19.892	20.549	0.61029					19	12	2	0	0	0	0.93566	1	5963	5963		6.6235	1.9075	1	1184500			35823	307	26240	26430	34838	34838					0.04110628507851288
MIKHYEVKVY	10	Unmodified	_MIKHYEVKVY_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	A375_MHC_IP_R2	2	655.7821044921875	2	655.352291	1308.69003	-0.88636	-0.00058088	-0.2483	-0.00016272	-1.1347	-0.0007436	655.3523737942171	129.76	0.85928	129.97	129.59	130.45	0.2142					23	16	2	0	0	0	0.71619	2	50935	50935;50998		8.7454	4.5559	1	7247900			35824	5371	26241	26431	34839;34840	34839					0.048031762479013196
MIKIIKILQ	9	Unmodified	_MIKIIKILQ_					0	0	0			REV__nc|ENSG00000186638|Q5T7B8-3|KIF24	REV__nc|ENSG00000186638|Q5T7B8-3|KIF24	MULTI-MSMS	A375_MHC_IP_R2	2	367.29766845703125	3	367.247234	1098.71987	0.11966	4.3946E-05	1.1792	0.00043305	1.2988	0.00047699	367.2476538988682	30.976	1.2191	31.695	31.417	32.636	0.71857					30	23	2	0	0	0	0.69317	1	11000	11000		7.609	2.7119	1	1632300	+		35825	21979	26242	26432	34841	34841					0.17446159983910547
MIKRSPSQGI	10	Unmodified	_MIKRSPSQGI_					0	0	0			REV__nc|ENSG00000180263|Q6ZV73-2|FGD6	REV__nc|ENSG00000180263|Q6ZV73-2|FGD6	MULTI-MSMS	A375_MHC_IP_R2	2	372.92462158203125	3	372.877981	1115.61211	0.41219	0.0001537	-0.43377	-0.00016174	-0.021586	-8.0489E-06	372.8778605360219	30.597	0.65726	31.315	30.809	31.467	0.71857					22	12	3	0	0	0	0.72061	1	10644	10644		3.0723	0.57378	1	8009200	+		35826	21601	26243	26433	34842	34842					0.05893163382552302
MILFFIVK	8	Unmodified	_MILFFIVK_					0	0	0			REV__ENST00000370587.5_1_1:85491576-85491813:-|nuORF	REV__ENST00000370587.5_1_1:85491576-85491813:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	506.1789855957031	2	505.808999	1009.60345	-0.3855	-0.00019499	-0.71318	-0.00036073	-1.0987	-0.00055572	505.80862458466567	36.123	0.45694	36.123	35.932	36.389	0					12	8	2	0	0	0	0.972	1	12115	12115		5.7604	0.52976	1	1144500	+		35827	24033	26244	26434	34843	34843					0.0990284148400633
MILRHKDLNI	10	Unmodified	_MILRHKDLNI_					0	0	0			REV__ENST00000531090.5_1_11:9005420-9009149:-|nuORF	REV__ENST00000531090.5_1_11:9005420-9009149:-|nuORF	MSMS	A375_MHC_IP_R1	1	626.7606201171875	2	626.863357	1251.71216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.77	1	103.77	103.27	104.27	0								0	0	0	0.15391	1	38105	38105		8.1555	1.9497	1		+		35828	21339	26245	26435	34844	34844					0.09637400716337652
MILSLQAFQK	10	Unmodified	_MILSLQAFQK_					0	0	0		ENSG00000132793|ENST00000373257|LPIN3;nc|ENSG00000132793|Q9BQK8-2|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	MSMS	A375_MHC_IP_R1	1	393.62432861328125	3	393.558248	1177.65292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.748	1	55.748	55.248	56.248	0								0	0	0	0.15391	1	19949	19949		4.7159	0	1				35829	4450	26246	26436	34845	34845					0.07119504702131962
MIMGCIFY	8	Unmodified	_MIMGCIFY_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	A375_MHC_IP_R1	1	489.164306640625	2	489.218303	976.422053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.362	1	35.362	34.862	35.862	0								0	0	0	0.16876	1	11758	11758		11.114	0.29054	1				35830	4716	26247	26437	34846	34846					-0.06710162875697279
MINILITSI	9	Unmodified	_MINILITSI_					0	0	0		ENST00000299638.7_2_15:58008553-58008757:+|nuORF	ENST00000299638.7_2_15:58008553-58008757:+|nuORF	ENST00000299638.7_2_15:58008553-58008757:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	508.6819152832031	2	509.304278	1016.594	-0.79745	-0.00040614	0.58748	0.00029921	-0.20997	-0.00010694	509.304805300902	72.802	0.60946	73.537	73.226	73.836	0.7354					16	11	2	0	0	0	0.62767	1	27740	27740		16.942	5.302	1	730510			35831	10528	26248	26438	34847	34847					0.08637028407838443
MINMFDKTK	9	Unmodified	_MINMFDKTK_					0	0	0		ENST00000461006.5_1_1:32096163-32098865:-|nuORF;ENSG00000162517|ENST00000373703|PEF1	ENST00000461006.5_1_1:32096163-32098865:-|nuORF	ENST00000461006.5_1_1:32096163-32098865:-|nuORF	MSMS	A375_MHC_IP_R1	1	376.5763244628906	3	376.524439	1126.55149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.64	1	146.64	146.14	147.14	0								0	0	0	0.15486	1	56091	56091		0.96228	0.33545	1				35832	6542	26249	26439	34848	34848					-0.006726899920749929
MINMKIDFW	9	Unmodified	_MINMKIDFW_					0	0	0		CCDC178|p.S204F|1|0.25|ENSG00000166960|chr18:33346258-33346258|G/A|missense_variant	CCDC178|p.S204F|1|0.25|ENSG00000166960|chr18:33346258-33346258|G/A|missense_variant	CCDC178|p.S204F|1|0.25|ENSG00000166960|chr18:33346258-33346258|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	399.930419921875	3	399.864684	1196.57222	-0.25235	-0.00010091	0.58964	0.00023578	0.33729	0.00013487	399.86501858435753	47.361	0.56081	47.361	47.107	47.668	0					14	10	2	0	0	0	0.6324	1	16656	16656		13.042	0.80181	1	1919700			35833	310	26250	26440	34849	34849					-0.018200996123823643
MIPLRYSKCL	10	Unmodified	_MIPLRYSKCL_					0	0	0			REV__ENST00000392253.2_1_2:202275976-202276645:-|nuORF	REV__ENST00000392253.2_1_2:202275976-202276645:-|nuORF	MSMS	A375_MHC_IP_R2	2	612.23486328125	2	612.335587	1222.65662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.53	1	121.06	120.56	121.56	0.5321								0	0	0	0.15417	1	46010	46010		7.2892	0	1		+		35834	24270	26251	26441	34850	34850					0.054198512043740266
MIQYWKRFDFW	11	Unmodified	_MIQYWKRFDFW_					0	0	0			REV__nc|ENSG00000115750|Q53T94-3|TAF1B	REV__nc|ENSG00000115750|Q53T94-3|TAF1B	MSMS	A375_MHC_IP_R2	2	540.65380859375	3	540.599107	1618.77549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.936	1	68.671	68.171	69.171	0.73511								0	0	0	0.16232	1	25745	25745		6.6235	6.1175	1		+		35835	17910	26252	26442	34851	34851					-0.009146585664439044
MIRQVPKIL	9	Unmodified	_MIRQVPKIL_					0	0	0			REV__nc|ENSG00000038382|O75962-2|TRIO	REV__nc|ENSG00000038382|O75962-2|TRIO	MSMS	A375_MHC_IP_R2	2	366.60174560546875	3	366.566967	1096.67907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.838	1	28.516	28.016	29.016	0.67857								0	0	0	0.15486	1	9560	9560		4.897	2.1618	1		+		35836	16328	26253	26443	34852	34852					0.13459818664296108
MISRNFFFYFQ	11	Unmodified	_MISRNFFFYFQ_					0	0	0		ENST00000514335.1_1_5:37051847-37064632:+|nuORF	ENST00000514335.1_1_5:37051847-37064632:+|nuORF	ENST00000514335.1_1_5:37051847-37064632:+|nuORF	MSMS	A375_MHC_IP_R1	1	500.4750671386719	3	500.57619	1498.70674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.37	1	104.37	103.87	104.87	0								0	0	0	0.16297	1	38324	38324		1.3296	0	1				35837	12938	26254	26444	34853	34853					-0.022663228661258472
MISRNFFFYFQ	11	Unmodified	_MISRNFFFYFQ_					0	0	0		ENST00000514335.1_1_5:37051847-37064632:+|nuORF	ENST00000514335.1_1_5:37051847-37064632:+|nuORF	ENST00000514335.1_1_5:37051847-37064632:+|nuORF	MSMS	A375_MHC_IP_R1	1	500.474853515625	3	500.57619	1498.70674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.1	1	105.1	104.6	105.6	0								0	0	0	0.16297	1	38587	38587		1.3296	0.70282	1				35838	12938	26254	26444	34854	34854					-0.022663228661258472
MISRNFFFYFQ	11	Unmodified	_MISRNFFFYFQ_					0	0	0		ENST00000514335.1_1_5:37051847-37064632:+|nuORF	ENST00000514335.1_1_5:37051847-37064632:+|nuORF	ENST00000514335.1_1_5:37051847-37064632:+|nuORF	MSMS	A375_MHC_IP_R2	2	500.47503662109375	3	500.57619	1498.70674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.71	1	104.48	103.98	104.98	0.76428								0	0	0	0.16297	1	39267	39267		1.3296	0.82369	1				35839	12938	26254	26444	34855	34855					-0.022663228661258472
MITVTRYLPKY	11	Unmodified	_MITVTRYLPKY_					0	0	0		nc|ENSG00000100150|O75140-8|DEPDC5;nc|ENSG00000100150|O75140-5|DEPDC5;nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5;nc|ENSG00000100150|O75140-6|DEPDC5	nc|ENSG00000100150|O75140-8|DEPDC5	nc|ENSG00000100150|O75140-8|DEPDC5	MULTI-MSMS	A375_MHC_IP_R2	2	462.6710510253906	3	462.260091	1383.75844	-0.77982	-0.00036048	-2.455	-0.0011348	-3.2348	-0.0014953	462.25897955474716	23.677	0.25481	24.308	24.129	24.384	0.63014					7	4	2	0	0	0	0.72713	1	7664	7664		11.631	5.7632	1	2323900			35840	2126	26255	26445	34856	34856					0.08191420827779439
MIVNPWHMVPR	11	Unmodified	_MIVNPWHMVPR_					0	0	0			REV__ENSG00000174206|ENST00000398055|KICS2	REV__ENSG00000174206|ENST00000398055|KICS2	MSMS	A375_MHC_IP_R1	1	690.35302734375	2	690.357385	1378.70022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.85	1	102.85	102.35	103.35	0								0	0	0	0.16249	1	37796	37796		5.7319	0.43497	1		+		35841	21271	26256	26446	34857	34857					0.02601460701475844
MIYSLRNKDVK	11	Unmodified	_MIYSLRNKDVK_					0	0	0		ENSG00000174914|ENST00000642097|OR9G1;ENSG00000174937|ENST00000641993|OR5M3;ENSG00000150269|ENST00000279791|OR5M9	ENSG00000174914|ENST00000642097|OR9G1	ENSG00000174914|ENST00000642097|OR9G1	MULTI-MSMS	A375_MHC_IP_R1	1	456.6551208496094	3	456.255228	1365.74386	-0.56701	-0.0002587	-0.030321	-1.3834E-05	-0.59734	-0.00027254	456.255132987738	26.15	0.55782	26.15	25.966	26.524	0					24	10	3	0	0	0	0.68072	1	7777	7777		17.049	2.2107	1	11536000			35842	5838	26257	26447	34858	34858					0.07561348679610091
MKAFLSGLMFA	11	Unmodified	_MKAFLSGLMFA_					0	0	0			REV__nc|ENSG00000205754|G3V0H7|SLCO1B7	REV__nc|ENSG00000205754|G3V0H7|SLCO1B7	MULTI-MSMS	A375_MHC_IP_R2	2	608.7167358398438	2	608.316863	1214.61917	-0.48493	-0.00029499	-0.17163	-0.00010441	-0.65656	-0.0003994	608.3165943284008	128.72	1.6697	128.96	128.6	130.27	0.23946					71	32	3	0	0	0	0.73135	1	50841	50841		7.609	0.88579	1	10411000	+		35843	27461	26258	26448	34859	34859					0.02044759938758034
MKALRGARGF	10	Unmodified	_MKALRGARGF_					0	0	0			REV__ENST00000417626.6_1_3:50329737-50329869:-|nuORF	REV__ENST00000417626.6_1_3:50329737-50329869:-|nuORF	MSMS	A375_MHC_IP_R2	2	369.5964050292969	3	369.546566	1105.61787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.25	1	27.928	27.428	28.428	0.67857								0	0	0	0.14925	1	9286	9286		12.175	4.0192	1		+		35844	24546	26259	26449	34860	34860					0.06928306684858399
MKAPVLPEPIL	11	Unmodified	_MKAPVLPEPIL_					0	0	0		ENSG00000165338|ENST00000298068|HECTD2;nc|ENSG00000165338|Q5U5R9-2|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	MULTI-MSMS	A375_MHC_IP_R2	2	604.7594604492188	2	604.359585	1206.70462	-0.25615	-0.00015481	-1.6118	-0.00097411	-1.868	-0.0011289	604.3593802929109	142.69	0.76089	142.72	142.53	143.29	0.030746					22	14	2	0	0	0	0.7362	1	55870	55870		2.9952	0.26005	1	2523600			35845	6943	26260	26450	34861	34861					0.10953248396049275
MKEKSQIRIRM	11	Unmodified	_MKEKSQIRIRM_					0	0	0			REV__ENST00000494364.5_1_15:32976832-32988877:+|nuORF	REV__ENST00000494364.5_1_15:32976832-32988877:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	710.7991333007812	2	710.399781	1418.78501	-0.8443	-0.00059979	0.30814	0.0002189	-0.53616	-0.00038089	710.3994603533217	132.91	1.8851	132.91	132.18	134.07	0					114	36	5	0	0	0	0.7342	1	51214	51214		4.897	0.36815	1	36687000	+		35846	25434	26261	26451	34862	34862					0.09236786447422674
MKEKSQIRIRM	11	Unmodified	_MKEKSQIRIRM_					0	0	0			REV__ENST00000494364.5_1_15:32976832-32988877:+|nuORF	REV__ENST00000494364.5_1_15:32976832-32988877:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	710.399781	1418.78501	-0.68102	-0.0004838	0.0046416	3.2974E-06	-0.67638	-0.0004805	710.3993225272176	132.85	1.5263	133.02	132.33	133.85	0.16487	0.056028	-0.00020283	NaN	4.897	101	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40465000	+		35847	25434	26261	26451							0.09236786447422674
MKEKVLFFSM	10	Unmodified	_MKEKVLFFSM_					0	0	0			REV__TLN2|p.V313M|1|0.34|ENSG00000171914|chr15:62675301-62675301|G/A|missense_variant	REV__TLN2|p.V313M|1|0.34|ENSG00000171914|chr15:62675301-62675301|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	630.7297973632812	2	630.32997	1258.64539	-0.83938	-0.00052909	0.2105	0.00013268	-0.62888	-0.0003964	630.3297825223409	130.08	1.2695	130.08	129.55	130.82	0					40	24	3	0	0	0	0.71466	1	49971	49971		2.9952	0	1	19170000	+		35848	28119	26262	26452	34863	34863					0.02641029110236559
MKEVVRSCTP	10	Unmodified	_MKEVVRSCTP_					0	0	0		nc|ENSG00000102290|Q9BZA7-6|PCDH11X;nc|ENSG00000102290|Q9BZA7-4|PCDH11X;nc|ENSG00000102290|Q9BZA7-3|PCDH11X;nc|ENSG00000102290|Q9BZA7-8|PCDH11X;ENSG00000102290|ENST00000682573|PCDH11X	nc|ENSG00000102290|Q9BZA7-6|PCDH11X	nc|ENSG00000102290|Q9BZA7-6|PCDH11X	MULTI-SECPEP	A375_MHC_IP_R2	2	384.28369140625	3	383.863343	1148.5682	-0.43758	-0.00016797	3.8089	0.0014621	3.3713	0.0012941	383.8651329390383	23.172	0.25384	23.802	23.675	23.928	0.63014					5	4	2	0	0	0	0.87043	1	7439	7439		17.863	10.254	1	553770			35849	2370	26263	26453	34864	34864					-0.00014189106104822713
MKGGGGGG	8	Unmodified	_MKGGGGGG_					0	0	0			REV__ENST00000428095.1_1_3:196098887-196159300:-|nuORF	REV__ENST00000428095.1_1_3:196098887-196159300:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	620.4531860351562	1	620.282071	619.274795	-0.52015	-0.00032264	1.7321	0.0010744	1.2119	0.00075173	620.2822201202137	141.2	0.36237	141.24	141.06	141.43	0.04216					10	6	2	0	0	0	0.972	1	55185	55185		0	0	1	296000	+		35850	23428	26264	26454	34865	34865					-0.05007175373964401
MKIYKPSLY	9	Unmodified	_MKIYKPSLY_					0	0	0			REV__ENST00000448133.1_1_13:61211649-61211793:-|nuORF	REV__ENST00000448133.1_1_13:61211649-61211793:-|nuORF	MSMS	A375_MHC_IP_R2	2	381.5735168457031	3	381.547461	1141.62055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.225	1	42	41.5	42.5	0.77451								0	0	0	0.15486	1	15289	15289		7.1017	2.5729	1		+		35851	20225	26265	26455	34866	34866					0.05540717299163589
MKKEKNVTL	9	Unmodified	_MKKEKNVTL_					0	0	0		LEPR|p.L663R|1|0.09|ENSG00000116678|chr1:65610289-65610289|T/G|missense_variant;LEPR|p.L663F|1|0.15|ENSG00000116678|chr1:65610288-65610288|C/T|missense_variant;nc|ENSG00000116678|P48357-5|LEPR;nc|ENSG00000116678|P48357-2|LEPR;nc|ENSG00000116678|P48357-4|LEPR;nc|ENSG00000116678|P48357-3|LEPR;ENSG00000116678|ENST00000349533|LEPR	LEPR|p.L663R|1|0.09|ENSG00000116678|chr1:65610289-65610289|T/G|missense_variant	LEPR|p.L663R|1|0.09|ENSG00000116678|chr1:65610289-65610289|T/G|missense_variant	MSMS	A375_MHC_IP_R1	1	545.7163696289062	2	545.818084	1089.62162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.04	1	121.04	120.54	121.54	0								0	0	0	0.1521	1	44918	44918		18.146	4.6385	1				35852	3415	26266	26456	34867	34867					0.08038931668056648
MKKIEKQT	8	Unmodified	_MKKIEKQT_					0	0	0			REV__tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	REV__tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	502.69635009765625	2	503.291702	1004.56885	-0.27762	-0.00013972	-2.6783	-0.001348	-2.956	-0.0014877	503.2902757081481	54.561	0.40681	54.561	54.314	54.72	0					10	7	2	0	0	0	0.93777	1	19425	19425		12.241	7.9114	1	1304800	+		35853	28494	26267	26457	34868	34868					0.06674973605254308
MKKKKRAKLY	10	Unmodified	_MKKKKRAKLY_					0	0	0			REV__ENST00000309334.5_2_10:63845597-63850657:+|nuORF	REV__ENST00000309334.5_2_10:63845597-63850657:+|nuORF	MSMS	A375_MHC_IP_R1	1	647.3745727539062	2	647.413017	1292.81148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.392	1	93.392	92.892	93.892	0								0	0	0	0.1552	1	34329	34329		3.9444	2.1002	1		+		35854	15447	26268	26458	34869	34869					0.1767884340110868
MKKLFPTEE	9	Unmodified	_MKKLFPTEE_					0	0	0		ENST00000481965.6_1_3:122990587-122990722:+|nuORF	ENST00000481965.6_1_3:122990587-122990722:+|nuORF	ENST00000481965.6_1_3:122990587-122990722:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	374.9452209472656	3	374.86697	1121.57908	0.24235	9.0849E-05	1.3241	0.00049636	1.5665	0.00058721	374.8675928222196	44.539	0.30358	45.308	45.188	45.492	0.76909					7	5	2	0	0	0	0.74412	1	16616	16616		10.151	5.2536	1	842910			35855	12520	26269	26459	34870	34870					0.023155365398451977
MKKWCHEL	8	Unmodified	_MKKWCHEL_					0	0	0			REV__nc|ENSG00000101180|Q9Y5N1-2|HRH3	REV__nc|ENSG00000101180|Q9Y5N1-2|HRH3	MULTI-SECPEP	A375_MHC_IP_R1	1	538.1965942382812	2	537.764797	1073.51504	-0.7463	-0.00040133	-0.7409	-0.00039843	-1.4872	-0.00079976	538.2665736658192	58.42	0.40522	58.42	58.177	58.582	0					10	7	2	0	0	0	0.94479	1	20951	20951		13.508	0.97634	1	851770	+		35856	27148	26270	26460	34871	34871					-0.01877522098106965
MKKWCHEL	8	Unmodified	_MKKWCHEL_					0	0	0			REV__nc|ENSG00000101180|Q9Y5N1-2|HRH3	REV__nc|ENSG00000101180|Q9Y5N1-2|HRH3	MULTI-MATCH	A375_MHC_IP_R2	2		2	537.764797	1073.51504	-1.1667	-0.00062742	0.0085896	4.6192E-06	-1.1581	-0.0006228	538.2667866164975	57.642	0.45826	58.391	58.221	58.679	0.74894	-0.014524	0.00026008	NaN	13.508	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1793900	+		35857	27148	26270	26460							-0.01877522098106965
MKKWWEMKREI	11	Unmodified	_MKKWWEMKREI_					0	0	0		ENSG00000130234|ENST00000252519|ACE2;nc|ENSG00000130234|Q9BYF1-3|ACE2	ENSG00000130234|ENST00000252519|ACE2	ENSG00000130234|ENST00000252519|ACE2	MULTI-MSMS	A375_MHC_IP_R2	2	522.2218017578125	3	522.275746	1563.80541	-0.87305	-0.00045597	-0.86202	-0.00045021	-1.7351	-0.00090619	522.2752437103211	58.257	0.45593	59.006	58.679	59.135	0.74894					10	8	2	0	0	0	0.73891	1	22005	22005		0.40827	0.31342	1	1480000			35858	4231	26271	26461	34872	34872					0.04605957107264658
MKKWWEMKREI	11	Unmodified	_MKKWWEMKREI_					0	0	0		ENSG00000130234|ENST00000252519|ACE2;nc|ENSG00000130234|Q9BYF1-3|ACE2	ENSG00000130234|ENST00000252519|ACE2	ENSG00000130234|ENST00000252519|ACE2	MULTI-MATCH	A375_MHC_IP_R1	1		3	522.275746	1563.80541	-0.54629	-0.00028531	-0.71459	-0.00037322	-1.2609	-0.00065853	522.2755144499091	58.996	0.35688	58.996	58.786	59.143	0	-0.0050059	0.00020732	NaN	0.40827	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1308800			35859	4231	26271	26461							0.04605957107264658
MKLFLKMLCA	10	Unmodified	_MKLFLKMLCA_					0	0	0		ENST00000314970.10_1_4:185580560-185587128:+|nuORF	ENST00000314970.10_1_4:185580560-185587128:+|nuORF	ENST00000314970.10_1_4:185580560-185587128:+|nuORF	MSMS	A375_MHC_IP_R2	2	399.650634765625	3	399.890064	1196.64836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.273	1	18.876	18.376	19.376	0.60308								0	0	0	0.15642	1	5426	5426		0	0	1				35860	10652	26272	26462	34873	34873					0.05790580963389402
MKLNISFPATG	11	Unmodified	_MKLNISFPATG_					0	0	0		ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-SECPEP	A375_MHC_IP_R1	1	590.2152709960938	2	589.815541	1177.61653	-0.40812	-0.00024071	0.7933	0.0004679	0.38519	0.00022719	590.3176847323405	87.116	0.76276	87.116	86.881	87.644	0					22	14	2	0	0	0	0.14821	1	31964	31964		59.368	37.831	1	3211900			35861	4863	26273	26463	34874	34874					0.03482627805442462
MKLNISFPATG	11	Unmodified	_MKLNISFPATG_					0	0	0		ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	589.815541	1177.61653	-0.41965	-0.00024752	1.1106	0.00065506	0.69096	0.00040754	590.3180687220053	86.396	0.81738	87.129	86.845	87.662	0.73301	0.0065463	0.00021351	NaN	80.676	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2745000			35862	4863	26273	26463							0.03482627805442462
MKLPDNTVK	9	Unmodified	_MKLPDNTVK_					0	0	0		ENSG00000159166|ENST00000391967|LAD1	ENSG00000159166|ENST00000391967|LAD1	ENSG00000159166|ENST00000391967|LAD1	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1585693359375	2	523.289159	1044.56377	-0.71743	-0.00037542	0.076371	3.9964E-05	-0.64106	-0.00033546	523.2891551307818	23.933	0.80977	23.933	23.787	24.597	0					21	15	2	0	0	0	0.63327	1	6766	6766		18.146	1.0335	1	21662000			35863	6354	26274	26464	34875	34875					0.043266697426361134
MKLRWFLKRWR	11	Unmodified	_MKLRWFLKRWR_					0	0	0		nc|ENSG00000149639|O94964-4|MTCL2;nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1	nc|ENSG00000149639|O94964-4|MTCL2	nc|ENSG00000149639|O94964-4|MTCL2	MSMS	A375_MHC_IP_R1	1	540.718994140625	3	540.653769	1618.93948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.48	1	137.48	136.98	137.98	0								0	0	0	0.16354	1	52918	52918		0.08335	0.08335	1				35864	5824	26275	26465	34876	34876					0.15476403714956177
MKLRWFLKRWR	11	Unmodified	_MKLRWFLKRWR_					0	0	0		nc|ENSG00000149639|O94964-4|MTCL2;nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1	nc|ENSG00000149639|O94964-4|MTCL2	nc|ENSG00000149639|O94964-4|MTCL2	MSMS	A375_MHC_IP_R2	2	810.3956909179688	2	810.477015	1618.93948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.26	1	148.28	147.78	148.78	0.018707								0	0	0	0.1636	1	57587	57587		0	0	1				35865	5824	26275	26465	34877	34877					0.15476403714956177
MKLRWFLKRWR	11	Unmodified	_MKLRWFLKRWR_					0	0	0		nc|ENSG00000149639|O94964-4|MTCL2;nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1	nc|ENSG00000149639|O94964-4|MTCL2	nc|ENSG00000149639|O94964-4|MTCL2	MULTI-SECPEP	A375_MHC_IP_R2	2	540.3844604492188	3	540.653769	1618.93948	-0.65363	-0.00035339	-0.51582	-0.00027888	-1.1695	-0.00063227	540.653647215183	138.27	0.50668	138.36	138.17	138.67	0.083969					12	9	2	0	0	0	1.0015	1	54319	54319		0	0	1	719580			35866	5824	26275	26465	34878	34878					0.15476403714956177
MKMHWPLE	8	Unmodified	_MKMHWPLE_					0	0	0			REV__nc|ENSG00000214198|Q6P2S7-2|TTC41P	REV__nc|ENSG00000214198|Q6P2S7-2|TTC41P	MSMS	A375_MHC_IP_R1	1	357.7362060546875	3	357.841991	1070.50414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.609	1	18.609	18.109	19.109	0								0	0	0	0.16876	1	4446	4446		0.40072	0	1		+		35867	27490	26276	26466	34879	34879					-0.028289244723964657
MKMHWPLE	8	Unmodified	_MKMHWPLE_					0	0	0			REV__nc|ENSG00000214198|Q6P2S7-2|TTC41P	REV__nc|ENSG00000214198|Q6P2S7-2|TTC41P	MSMS	A375_MHC_IP_R1	1	357.6998596191406	3	357.841991	1070.50414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.699	1	18.699	18.199	19.199	0								0	0	0	0.16876	1	4473	4473		0.40072	0	1		+		35868	27490	26276	26466	34880	34880					-0.028289244723964657
MKNTCKSLF	9	Unmodified	_MKNTCKSLF_					0	0	0		ENST00000550411.5_1_12:54653145-54653241:-|nuORF	ENST00000550411.5_1_12:54653145-54653241:-|nuORF	ENST00000550411.5_1_12:54653145-54653241:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	536.66943359375	2	536.269912	1070.52527	-0.69264	-0.00037144	-1.0924	-0.00058582	-1.785	-0.00095726	536.2695854035866	110.86	0.45587	111.59	111.4	111.85	0.73692					13	8	2	0	0	0	0.69674	1	41827	41827		7.2892	0	1	1629500			35869	13370	26277	26467	34881	34881					-0.0071695916353746725
MKPLLQYRW	9	Unmodified	_MKPLLQYRW_					0	0	0			REV__ENSG00000109911|ENST00000640961|ELP4	REV__ENSG00000109911|ENST00000640961|ELP4	MULTI-SECPEP	A375_MHC_IP_R1	1	411.6206970214844	3	412.230355	1233.66923	0.63002	0.00025971	1.0896	0.00044917	1.7196	0.00070889	412.2309025862231	45.165	0.25405	45.165	45.03	45.284	0					6	4	2	0	0	0	0.80713	1	15776	15776		4.1895	4.1895	1	832470	+		35870	17601	26278	26468	34882	34882					0.06174630658915703
MKRKYRFPRSI	11	Unmodified	_MKRKYRFPRSI_					0	0	0			REV__ENSG00000169676|ENST00000304374|DRD5	REV__ENSG00000169676|ENST00000304374|DRD5	MSMS	A375_MHC_IP_R2	2	494.5013732910156	3	494.622246	1480.84491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.95	1	86.683	86.183	87.183	0.733								0	0	0	0.16297	1	32686	32686		1.3296	0	1		+		35871	20938	26279	26469	34883	34883					0.12371845172992835
MKRRRGLWWLV	11	Unmodified	_MKRRRGLWWLV_					0	0	0		OPALIN|p.E126K|1|0.62|ENSG00000197430|chr10:96345991-96345991|C/T|missense_variant	OPALIN|p.E126K|1|0.62|ENSG00000197430|chr10:96345991-96345991|C/T|missense_variant	OPALIN|p.E126K|1|0.62|ENSG00000197430|chr10:96345991-96345991|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	500.725341796875	3	500.962602	1499.86598	-0.65052	-0.00032589	0.028287	1.4171E-05	-0.62223	-0.00031172	501.2970201918571	134.49	0.30153	134.49	134.27	134.57	0					8	5	2	0	0	0	1.001	1	51822	51822		1.4551	1.3718	1	1291900			35872	15054	26280	26470	34884	34884					0.13603855272504006
MKRRRWQWWKK	11	Unmodified	_MKRRRWQWWKK_					0	0	0		ENST00000324344.8_1_16:20911624-20911678:-|nuORF	ENST00000324344.8_1_16:20911624-20911678:-|nuORF	ENST00000324344.8_1_16:20911624-20911678:-|nuORF	MSMS	A375_MHC_IP_R2	2	844.7492065429688	2	844.97517	1687.93579	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.41	1	121.86	121.36	122.36	0.44488								0	0	0	0.16354	1	46434	46434		0.30703	0.03801	1				35873	10716	26281	26471	34885	34885					0.11933733941123137
MKSHSTTFF	9	Unmodified	_MKSHSTTFF_					0	0	0		ENST00000359904.7_1_17:66244441-66244810:+|nuORF	ENST00000359904.7_1_17:66244441-66244810:+|nuORF	ENST00000359904.7_1_17:66244441-66244810:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	543.684326171875	2	543.257859	1084.50117	-0.49895	-0.00027106	-1.0633	-0.00057763	-1.5622	-0.00084869	543.25771960128	63.034	0.46192	63.034	62.711	63.173	0					12	8	2	0	0	0	0.51106	1	22722	22722		19.257	1.1106	1	923490			35874	11021	26282	26472	34886	34886					-0.03770476325553318
MKSSKDLQFA	10	Unmodified	_MKSSKDLQFA_					0	0	0		ENST00000509818.5_1_4:119687763-119745832:-|nuORF	ENST00000509818.5_1_4:119687763-119745832:-|nuORF	ENST00000509818.5_1_4:119687763-119745832:-|nuORF	MSMS	A375_MHC_IP_R1	1	385.5858154296875	3	385.533991	1153.58014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.731	1	41.731	41.231	42.231	0								0	0	0	0.1524	1	14426	14426		7.9454	0.46833	1				35875	12894	26283	26473	34887	34887					0.009497509087395883
MKTKFWKTVRY	11	Unmodified	_MKTKFWKTVRY_					0	0	0		nc|ENSG00000115598|Q9HB29-2|IL1RL2;ENSG00000115598|ENST00000264257|IL1RL2	nc|ENSG00000115598|Q9HB29-2|IL1RL2	nc|ENSG00000115598|Q9HB29-2|IL1RL2	MULTI-SECPEP	A375_MHC_IP_R2	2	373.2889404296875	4	372.710245	1486.81188	0.18981	7.0743E-05	0.29391	0.00010954	0.48372	0.00018029	372.9610504135715	24.036	0.30506	24.679	24.602	24.907	0.64368					7	5	2	0	0	0	0.99883	1	7798	7798		2.6312	1.1761	1	1374500			35876	3324	26284	26474	34888	34888					0.08794218330262993
MKVDDCHLW	9	Unmodified	_MKVDDCHLW_					0	0	0			REV__NGLY1|p.A354Dfs*14|1|0.54|ENSG00000151092|chr3:25736092-25736092|G/-|frameshift_variant	REV__NGLY1|p.A354Dfs*14|1|0.54|ENSG00000151092|chr3:25736092-25736092|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	383.2950744628906	3	382.840538	1145.49979	0.74325	0.00028454	0.14402	5.5135E-05	0.88726	0.00033968	382.8404199971766	44.587	0.40708	44.587	44.37	44.777	0					11	7	2	0	0	0	0.80101	1	15534	15534		5.2969	3.7046	1	1144200	+		35877	27601	26285	26475	34889	34889					-0.0671443368596556
MKWRLNKY	8	Unmodified	_MKWRLNKY_					0	0	0		ENST00000230124.7_1_6:110064325-110064367:+|nuORF	ENST00000230124.7_1_6:110064325-110064367:+|nuORF	ENST00000230124.7_1_6:110064325-110064367:+|nuORF	MSMS	A375_MHC_IP_R1	1	380.2682189941406	3	380.211183	1137.61172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.982	1	24.982	24.482	25.482	0								0	0	0	0.16876	1	7202	7202		6.7232	1.4263	1				35878	10140	26286	26476	34890	34890					0.04841788453359186
MLAGDGMF	8	Unmodified	_MLAGDGMF_					0	0	0		ADGRB3|p.S596F|1|0.14|ENSG00000135298|chr6:68993820-68993820|C/T|missense_variant	ADGRB3|p.S596F|1|0.14|ENSG00000135298|chr6:68993820-68993820|C/T|missense_variant	ADGRB3|p.S596F|1|0.14|ENSG00000135298|chr6:68993820-68993820|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	421.1434020996094	2	421.182774	840.350996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.86	1	104.62	104.12	105.12	0.76428								0	0	0	0.16876	1	39317	39317		2.5775	0	1				35879	67	26287	26477	34891	34891					-0.075565395888475
MLAMILLLGV	10	Unmodified	_MLAMILLLGV_					0	0	0			REV__ENSG00000185900|ENST00000331373|POMK	REV__ENSG00000185900|ENST00000331373|POMK	MULTI-MSMS	A375_MHC_IP_R2	2	537.7261352539062	2	537.326699	1072.63885	-0.68096	-0.0003659	0.10241	5.5029E-05	-0.57854	-0.00031087	537.3268148384752	149.86	2.5456	149.88	147.47	150.01	0.01825					186	114	3	0	0	0	0.72747	1	58027	58027		0	0	1	235400	+		35880	21929	26288	26478	34892	34892					0.10543135949546922
MLARLASA	8	Oxidation (M)	_M(Oxidation (M))LARLASA_		M(1)LARLASA		M(79)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.V1071Wfs*3|1|0.24|ENSG00000173546|chr15:75687855-75687856|-/GCCAC|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R1	1	425.13641357421875	2	424.736563	847.458573	-0.44649	-0.00018964	0.14177	6.0214E-05	-0.30472	-0.00012943	424.7365771460183	30.024	1.7621	30.024	29.703	31.465	0					60	34	2	0	0	0	0.16549	1	9432	9432		78.728	26.46	1	18450000			35881	7807	26289	26479	34893	34893		390			0.028741733368860878
MLARLASA	8	Oxidation (M)	_M(Oxidation (M))LARLASA_		M(1)LARLASA		M(89)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.V1071Wfs*3|1|0.24|ENSG00000173546|chr15:75687855-75687856|-/GCCAC|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R2	2	425.1365966796875	2	424.736563	847.458573	-0.79701	-0.00033852	0.20645	8.7689E-05	-0.59056	-0.00025083	424.7366057592033	29.336	1.4151	30.035	29.73	31.145	0.69872					48	27	2	0	0	0	0.13337	1	10215	10215		88.954	36.686	1	8305200			35882	7807	26289	26479	34894	34894		390			0.028741733368860878
MLARLASA	8	Unmodified	_MLARLASA_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.V1071Wfs*3|1|0.24|ENSG00000173546|chr15:75687855-75687856|-/GCCAC|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R1	1	417.13909912109375	2	416.739105	831.463658	-0.007922	-3.3014E-06	0.10042	4.185E-05	0.0925	3.8549E-05	416.7391047659512	39.708	0.55747	39.708	39.441	39.999	0					16	10	2	0	0	0	0.16945	1	13588	13588		71.922	21.989	1	5989700			35883	7807	26289	26480	34895	34895					0.04118477199494919
MLARLASA	8	Unmodified	_MLARLASA_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.V1071Wfs*3|1|0.24|ENSG00000173546|chr15:75687855-75687856|-/GCCAC|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	A375_MHC_IP_R2	2	417.1388854980469	2	416.739105	831.463658	-0.32713	-0.00013633	-0.0048158	-2.0069E-06	-0.33194	-0.00013833	416.73905242554014	38.753	0.61343	39.528	39.3	39.914	0.77451					24	11	3	0	0	0	0.1561	1	14274	14274		81.89	33.544	1	10462000			35884	7807	26289	26480	34896	34896					0.04118477199494919
MLARNADDHE	10	Unmodified	_MLARNADDHE_					0	0	0			REV__tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	REV__tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	391.1639099121094	3	391.176867	1170.50877	-0.29932	-0.00011709	0.71425	0.0002794	0.41493	0.00016231	391.17710533732196	44.917	0.51058	45.686	45.441	45.951	0.76909					13	9	2	0	0	0	0.70496	1	16810	16810		5.7834	3.0482	1	2629700	+		35885	28773	26290	26481	34897	34897					-0.06966368795929156
MLARNADDHE	10	Unmodified	_MLARNADDHE_					0	0	0			REV__tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	REV__tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		3	391.176867	1170.50877	0.31589	0.00012357	0.085798	3.3562E-05	0.40169	0.00015713	391.17688416452717	45.794	0.50896	45.794	45.534	46.043	0	0.054	-0.00056096	NaN	5.7834	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2025500	+		35886	28773	26290	26481							-0.06966368795929156
MLARNADDHE	10	Unmodified	_MLARNADDHE_					0	0	0			REV__tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	REV__tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	391.176867	1170.50877	-0.29932	-0.00011709	0.71425	0.0002794	0.41493	0.00016231	391.17710533732196	44.917	0.51058	45.686	45.441	45.951	0.76909	-0.054	0.00017655	NaN	5.7834	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2629700	+		35887	28773	26290	26481							-0.06966368795929156
MLCAGFEEGK	10	Unmodified	_MLCAGFEEGK_					0	0	0		ENSG00000172382|ENST00000302641|PRSS27	ENSG00000172382|ENST00000302641|PRSS27	ENSG00000172382|ENST00000302641|PRSS27	MULTI-MSMS	A375_MHC_IP_R1	1	543.2048950195312	2	542.743728	1083.4729	-0.33986	-0.00018446	0.091878	4.9866E-05	-0.24798	-0.00013459	542.7437924187567	49.717	0.50845	49.717	49.439	49.947	0					12	9	2	0	0	0	0.6502	1	17637	17637		17.113	3.2068	1	1388100			35888	7707	26291	26482	34898	34898					-0.06549542297148037
MLCEDRWQRRA	11	Unmodified	_MLCEDRWQRRA_					0	0	0			REV__nc|ENSG00000165475|Q9Y2S2-2|CRYL1	REV__nc|ENSG00000165475|Q9Y2S2-2|CRYL1	MSMS	A375_MHC_IP_R1	1	488.469482421875	3	488.571334	1462.69217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.05	1	55.05	54.55	55.55	0								0	0	0	0.16334	1	19678	19678		1.3296	0.70282	1		+		35889	20586	26292	26483	34899	34899					-0.02066718285936986
MLCLLLTLGV	10	Unmodified	_MLCLLLTLGV_					0	0	0		nc|ENSG00000122133|P09466-3|PAEP;nc|ENSG00000122133|P09466-2|PAEP;chr9:135564354-135565414|170|96.62|0.43|7.82|+|ENST00000371768|PAEP,PAEP;ENSG00000122133|ENST00000479141|PAEP	nc|ENSG00000122133|P09466-3|PAEP	nc|ENSG00000122133|P09466-3|PAEP	MULTI-MSMS	A375_MHC_IP_R2	2	538.717041015625	2	538.316331	1074.61811	-0.72937	-0.00039263	1.5321	0.00082473	0.80268	0.0004321	538.3168595577481	117.19	0.45621	117.85	117.63	118.09	0.65962					17	8	3	0	0	0	0.19699	1	44325	44325		60.39	12.044	1	8222900			35890	513	26293	26484	34900	34900					0.08378545569848939
MLDDRAYLV	9	Oxidation (M)	_M(Oxidation (M))LDDRAYLV_		M(1)LDDRAYLV		M(40)LDDRAYLV	0	0	1		nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-MSMS	A375_MHC_IP_R1	1	556.6760864257812	2	556.276249	1110.53795	-0.45739	-0.00025444	-0.52486	-0.00029197	-0.98225	-0.0005464	556.2761338810717	62.922	1.0233	62.922	62.454	63.477	0					27	19	2	0	0	0	0.16945	1	22717	22717		40.239	17.503	1	1776700			35891	2039	26294	26485	34901	34901		75			-0.012902244996666923
MLDDRAYLV	9	Unmodified	_MLDDRAYLV_					0	0	0		nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-SECPEP	A375_MHC_IP_R1	1	548.6770629882812	2	548.278792	1094.54303	-0.53851	-0.00029526	-2.145	-0.0011761	-2.6835	-0.0014713	548.2777268556512	74.579	0.71098	74.579	74.197	74.908	0					22	13	2	0	0	0	0.54812	1	27117	27117		31.268	9.7314	1	3427300			35892	2039	26294	26486	34902	34902					-0.00045920637057861313
MLDEPTNHL	9	Oxidation (M)	_M(Oxidation (M))LDEPTNHL_		M(1)LDEPTNHL		M(77)LDEPTNHL	0	0	1		nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	MULTI-SECPEP	A375_MHC_IP_R1	1	543.6500244140625	2	543.250231	1084.48591	-0.86207	-0.00046832	-0.43228	-0.00023484	-1.2943	-0.00070316	543.2504418078562	36.725	0.65635	36.725	36.389	37.045	0					22	12	3	0	0	0	0.0575	1	12310	12310		76.825	38.851	1	2503800			35893	9458	26295	26487	34903	34903		435			-0.05295387913406557
MLDEPTNHL	9	Oxidation (M)	_M(Oxidation (M))LDEPTNHL_		M(1)LDEPTNHL		M(77)LDEPTNHL	0	0	1		nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	MULTI-SECPEP	A375_MHC_IP_R2	2	543.650146484375	2	543.250231	1084.48591	-0.97202	-0.00052805	0.226	0.00012278	-0.74602	-0.00040527	543.2503503078443	36.053	0.96643	36.817	36.132	37.099	0.76338					27	18	2	0	0	0	0.0575	1	13035	13035		76.825	42.722	1	3620200			35894	9458	26295	26487	34904	34904		435			-0.05295387913406557
MLDHQPPQY	9	Oxidation (M)	_M(Oxidation (M))LDHQPPQY_		M(1)LDHQPPQY		M(96)LDHQPPQY	0	0	1		nc|ENSG00000108604|Q92925-3|SMARCD2;nc|ENSG00000108604|Q92925-2|SMARCD2;ENSG00000108604|ENST00000448276|SMARCD2	nc|ENSG00000108604|Q92925-3|SMARCD2	nc|ENSG00000108604|Q92925-3|SMARCD2	MULTI-MSMS	A375_MHC_IP_R1	1	573.1580200195312	2	572.758223	1143.50189	-0.31636	-0.0001812	-0.10507	-6.0182E-05	-0.42144	-0.00024138	572.7580822996516	28.331	1.6172	28.331	27.887	29.504	0					96	31	4	0	0	0	0.010171	2	8683	8680;8683		96.111	54.271	1	18495000			35895	2822	26296	26488	34905;34906	34906		127			-0.06411681676490844
MLDHQPPQY	9	Oxidation (M)	_M(Oxidation (M))LDHQPPQY_		M(1)LDHQPPQY		M(130)LDHQPPQY	0	0	1		nc|ENSG00000108604|Q92925-3|SMARCD2;nc|ENSG00000108604|Q92925-2|SMARCD2;ENSG00000108604|ENST00000448276|SMARCD2	nc|ENSG00000108604|Q92925-3|SMARCD2	nc|ENSG00000108604|Q92925-3|SMARCD2	MULTI-MSMS	A375_MHC_IP_R2	2	573.1578369140625	2	572.758223	1143.50189	-0.39391	-0.00022562	-0.22387	-0.00012822	-0.61778	-0.00035384	572.7580341905184	27.758	1.4153	28.436	28.098	29.514	0.67857					76	27	4	0	0	0	0.0096397	2	9720	9459;9720		126.57	76.633	1	14618000			35896	2822	26296	26488	34907;34908	34908		127			-0.06411681676490844
MLDHQPPQY	9	Unmodified	_MLDHQPPQY_					0	0	0		nc|ENSG00000108604|Q92925-3|SMARCD2;nc|ENSG00000108604|Q92925-2|SMARCD2;ENSG00000108604|ENST00000448276|SMARCD2	nc|ENSG00000108604|Q92925-3|SMARCD2	nc|ENSG00000108604|Q92925-3|SMARCD2	MULTI-SECPEP	A375_MHC_IP_R1	1	565.1605224609375	2	564.760766	1127.50698	-0.21713	-0.00012263	-0.26424	-0.00014923	-0.48137	-0.00027186	564.7606898423301	35.804	0.91735	35.804	35.319	36.236	0					40	17	3	0	0	0	0.028087	1	11858	11858		106.94	82.92	1	12092000			35897	2822	26296	26489	34909	34909					-0.051673778138820126
MLDHQPPQY	9	Unmodified	_MLDHQPPQY_					0	0	0		nc|ENSG00000108604|Q92925-3|SMARCD2;nc|ENSG00000108604|Q92925-2|SMARCD2;ENSG00000108604|ENST00000448276|SMARCD2	nc|ENSG00000108604|Q92925-3|SMARCD2	nc|ENSG00000108604|Q92925-3|SMARCD2	MULTI-MSMS	A375_MHC_IP_R2	2	564.6948852539062	2	564.760766	1127.50698	-0.692	-0.00039082	0.33258	0.00018783	-0.35943	-0.00020299	564.7607942665463	35.037	1.0111	35.8	35.475	36.486	0.76338					60	19	4	0	0	0	0.007896	1	12745	12745		129.77	99.548	1	14921000			35898	2822	26296	26489	34910	34910					-0.051673778138820126
MLDSHEELY	9	Unmodified	_MLDSHEELY_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R1	1	568.708740234375	2	568.750064	1135.48558	-0.49433	-0.00028115	0.21123	0.00012013	-0.2831	-0.00016102	568.7503179533471	52.836	0.45583	52.836	52.541	52.997	0					14	8	3	0	0	0	0.32899	1	18789	18789		28.487	7.6156	1	2462100			35899	9114	26297	26490	34911	34911					-0.07674807633247838
MLDSHEELY	9	Unmodified	_MLDSHEELY_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R2	2	569.2006225585938	2	568.750064	1135.48558	-0.70427	-0.00040055	0.42046	0.00023914	-0.28381	-0.00016142	568.7502759893949	52.155	0.35521	52.907	52.677	53.032	0.75225					11	6	2	0	0	0	0.55818	1	19663	19663		16.942	0	1	3010900			35900	9114	26297	26490	34912	34912					-0.07674807633247838
MLDYDDSNEA	10	Unmodified	_MLDYDDSNEA_					0	0	0			REV__ENSG00000163661|ENST00000295927|PTX3	REV__ENSG00000163661|ENST00000295927|PTX3	MULTI-MSMS	A375_MHC_IP_R1	1	587.1256713867188	2	586.724243	1171.43393	-0.048977	-2.8736E-05	1.5764	0.00092492	1.5274	0.00089618	586.7253397754782	109.3	0.56201	109.3	109.12	109.68	0					21	10	3	0	0	0	0.70179	2	40114	40070;40114		11.495	2.1473	1	2027500	+		35901	20396	26298	26491	34913;34914	34914					-0.1449259611783873
MLERRALLWQR	11	Unmodified	_MLERRALLWQR_					0	0	0		nc|ENSG00000125746|O95834-3|EML2	nc|ENSG00000125746|O95834-3|EML2	nc|ENSG00000125746|O95834-3|EML2	MULTI-MSMS	A375_MHC_IP_R1	1	736.8162841796875	2	736.419362	1470.82417	-0.87224	-0.00064233	-1.1075	-0.00081562	-1.9798	-0.001458	736.4182172321474	138.84	0.25352	138.84	138.71	138.97	0					10	4	3	0	0	0	0.73078	1	53412	53412		8.1555	2.8586	1	2392800			35902	14582	26299	26492	34915	34915					0.10759254793310902
MLEVLNEFFKK	11	Unmodified	_MLEVLNEFFKK_					0	0	0			REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	699.7786254882812	2	699.378506	1396.74246	-0.66292	-0.00046363	-0.53931	-0.00037718	-1.2022	-0.00084081	699.3779279270892	132.24	0.61249	132.43	132.15	132.76	0.18953					36	11	4	0	0	0	0.73332	1	51992	51992		5.7319	2.9967	1	8950000	+		35903	28336	26300	26493	34916	34916					0.059957145908356324
MLEVLNEFFKK	11	Unmodified	_MLEVLNEFFKK_					0	0	0			REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	699.378506	1396.74246	-0.8556	-0.00059839	-0.3219	-0.00022513	-1.1775	-0.00082352	699.3784402731557	132.36	0.60669	132.36	132.08	132.69	0	-0.034111	0.00015889	NaN	5.7319	31	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12112000	+		35904	28336	26300	26493							0.059957145908356324
MLEVLNEFFKK	11	Unmodified	_MLEVLNEFFKK_					0	0	0			REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	699.378506	1396.74246	-0.66292	-0.00046363	-0.53931	-0.00037718	-1.2022	-0.00084081	699.3779279270892	132.24	0.61249	132.43	132.15	132.76	0.18953	0.034111	-0.00014521	NaN	5.7319	36	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8950000	+		35905	28336	26300	26493							0.059957145908356324
MLFGHPLLV	9	Unmodified	_MLFGHPLLV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-SECPEP	A375_MHC_IP_R1	1	514.1936645507812	2	513.793881	1025.57321	-0.3638	-0.00018692	0.080086	4.1148E-05	-0.28371	-0.00014577	513.7938640973633	110.75	1.3293	110.75	110.44	111.77	0					48	25	3	0	0	0	0.011425	1	40580	40580		109.15	72.688	1	10769000			35906	2365	26301	26494	34917	34917					0.06144482818808683
MLFGHPLLV	9	Unmodified	_MLFGHPLLV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-MSMS	A375_MHC_IP_R2	2	514.1937255859375	2	513.793881	1025.57321	-0.632	-0.00032472	-0.019335	-9.9342E-06	-0.65133	-0.00033465	513.7938900217026	109.73	2.0903	110.48	110.08	112.17	0.74683					65	40	4	0	0	0	0.0095977	1	41351	41351		109.15	63.404	1	16518000			35907	2365	26301	26494	34918	34918					0.06144482818808683
MLFGHPLLV	9	Oxidation (M)	_M(Oxidation (M))LFGHPLLV_		M(1)LFGHPLLV		M(110)LFGHPLLV	0	0	1		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-SECPEP	A375_MHC_IP_R1	1	522.190673828125	2	521.791338	1041.56812	-0.49936	-0.00026056	-0.33624	-0.00017545	-0.8356	-0.00043601	521.7911898298953	99.59	1.9727	99.59	99.168	101.14	0					89	38	3	0	0	0	0.010994	1	36812	36812		109.15	63.404	1	6289200			35908	2365	26301	26495	34919	34919		100			0.04900178956177115
MLFGHPLLV	9	Oxidation (M)	_M(Oxidation (M))LFGHPLLV_		M(1)LFGHPLLV		M(110)LFGHPLLV	0	0	1		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-SECPEP	A375_MHC_IP_R1	1	522.1915283203125	2	521.791338	1041.56812	-0.48082	-0.00025089	-0.30417	-0.00015871	-0.78499	-0.0004096	521.7912022011715	98.635	1.2202	98.635	98.151	99.371	0					83	23	6	0	0	0	0.011425	1	36171	36171		109.15	80.981	1	16240000			35909	2365	26301	26495	34920	34920		100			0.04900178956177115
MLFGHPLLV	9	Oxidation (M)	_M(Oxidation (M))LFGHPLLV_		M(1)LFGHPLLV		M(110)LFGHPLLV	0	0	1		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-MSMS	A375_MHC_IP_R2	2	522.4568481445312	2	521.791338	1041.56812	-0.68915	-0.00035959	0.046626	2.4329E-05	-0.64252	-0.00033526	521.7912940353956	97.564	1.4772	98.32	97.72	99.197	0.75586					88	28	5	0	0	0	0.0095977	1	37104	37104		109.15	72.688	1	9424500			35910	2365	26301	26495	34921	34921		100			0.04900178956177115
MLFGHPLLV	9	Oxidation (M)	_M(Oxidation (M))LFGHPLLV_		M(1)LFGHPLLV		M(110)LFGHPLLV	0	0	1		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-SECPEP	A375_MHC_IP_R2	2	522.1909790039062	2	521.791338	1041.56812	-0.44981	-0.00023471	-0.41813	-0.00021818	-0.86794	-0.00045288	521.7911733198778	98.846	2.136	99.606	99.047	101.18	0.75977					89	41	3	0	0	0	0.011425	1	37605	37605		109.15	63.404	1	7044600			35911	2365	26301	26495	34922	34922		100			0.04900178956177115
MLFPGSIAL	9	Unmodified	_MLFPGSIAL_					0	0	0		ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	MULTI-MSMS	A375_MHC_IP_R1	1	475.1647644042969	2	474.764789	947.515025	-0.70853	-0.00033638	0.61658	0.00029273	-0.09195	-4.3654E-05	474.7650643161918	130.08	0.30397	130.08	129.85	130.16	0					6	5	2	0	0	0	0.051888	1	50067	50067		63.563	29.46	1	5825400			35912	2286	26302	26496	34923	34923					0.03916801173522799
MLFPGSIAL	9	Unmodified	_MLFPGSIAL_					0	0	0		ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	MULTI-SECPEP	A375_MHC_IP_R2	2	948.9204711914062	1	948.522301	947.515025	-0.20227	-0.00019185	-0.049931	-4.7361E-05	-0.2522	-0.00023922	948.5219390180054	129.86	0.25337	130.07	129.94	130.2	0.2142					7	4	2	0	0	0	0.011416	1	51054	51054		114.94	65.275	1	16268000			35913	2286	26302	26496	34924	34924					0.03916801173522799
MLFPGSIAL	9	Unmodified	_MLFPGSIAL_					0	0	0		ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	MULTI-MATCH	A375_MHC_IP_R1	1		1	948.522301	947.515025	-0.18481	-0.00017529	0.48986	0.00046465	0.30506	0.00028935	948.5228911435048	130.08	0.50804	130.08	129.85	130.36	0	0.00555	0.00020844	NaN	114.94	14	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18701000			35914	2286	26302	26496							0.03916801173522799
MLGPKLTKVA	10	Unmodified	_MLGPKLTKVA_					0	0	0			REV__FRK|p.S268L|1|0.47|ENSG00000111816|chr6:115956607-115956607|G/A|missense_variant	REV__FRK|p.S268L|1|0.47|ENSG00000111816|chr6:115956607-115956607|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	353.26959228515625	3	353.219455	1056.63654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.996	1	34.748	34.248	35.248	0.75225								0	0	0	0.14741	1	12223	12223		14.957	4.0582	1		+		35915	26649	26303	26497	34925	34925					0.11048423536067276
MLGPVSHP	8	Unmodified	_MLGPVSHP_					0	0	0			REV__nc|ENSG00000276644|Q9UI36-4|DACH1	REV__nc|ENSG00000276644|Q9UI36-4|DACH1	MULTI-MSMS	A375_MHC_IP_R1	1	837.82861328125	1	837.428735	836.421459	-0.61529	-0.00051526	0.99277	0.00083137	0.37748	0.00031611	837.4291674624064	134.02	0.35616	134.02	133.81	134.17	0					9	6	2	0	0	0	0.75805	1	51709	51709		18.135	1.0484	1	2007000	+		35916	22969	26304	26498	34926	34926					-0.0032949820888461545
MLGPVSHP	8	Unmodified	_MLGPVSHP_					0	0	0			REV__nc|ENSG00000276644|Q9UI36-4|DACH1	REV__nc|ENSG00000276644|Q9UI36-4|DACH1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	837.428735	836.421459	-0.61529	-0.00051526	0.99277	0.00083137	0.37748	0.00031611	837.4291674624064	134.02	0.35616	134.02	133.81	134.17	0	0.019742	-9.7089E-05	NaN	18.135	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2007000	+		35917	22969	26304	26498							-0.0032949820888461545
MLGPVSHP	8	Unmodified	_MLGPVSHP_					0	0	0			REV__nc|ENSG00000276644|Q9UI36-4|DACH1	REV__nc|ENSG00000276644|Q9UI36-4|DACH1	MULTI-MATCH	A375_MHC_IP_R2	2		1	837.428735	836.421459	-0.64898	-0.00054347	1.2803	0.0010722	0.63135	0.00052871	837.4297955534242	133.82	0.40691	133.98	133.8	134.21	0.16487	-0.019742	0.00014372	NaN	18.135	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2971500	+		35918	22969	26304	26498							-0.0032949820888461545
MLHKKLQAEQ	10	Unmodified	_MLHKKLQAEQ_					0	0	0			REV__nc|ENSG00000142025|Q8IXT2-2|DMRTC2	REV__nc|ENSG00000142025|Q8IXT2-2|DMRTC2	MULTI-SECPEP	A375_MHC_IP_R2	2	408.6260070800781	3	409.228902	1224.66488	-0.31171	-0.00012756	-4.0795	-0.0016695	-4.3912	-0.001797	409.5608905306024	20.322	0.30693	20.932	20.752	21.059	0.61029					7	5	2	0	0	0	0.93873	1	6261	6261		7.9454	2.8979	1	682690	+		35919	19292	26305	26499	34927	34927					0.061531214453452776
MLIFRVIKW	9	Unmodified	_MLIFRVIKW_					0	0	0		tr|U7SNL5|U7SNL5_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01803PE=4SV=1	tr|U7SNL5|U7SNL5_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01803PE=4SV=1	tr|U7SNL5|U7SNL5_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01803PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	1206.1229248046875	1	1205.72273	1204.71546	-0.36812	-0.00044385	0.26942	0.00032485	-0.098694	-0.000119	1205.722799217893	149.51	1.5322	149.51	148.36	149.89	0					97	43	3	0	0	0	0.81896	1	57003	57003		0	0	1	464490			35920	29556	26306	26500	34928	34928					0.1212869556102305
MLIGEIFEL	9	Oxidation (M)	_M(Oxidation (M))LIGEIFEL_		M(1)LIGEIFEL		M(71)LIGEIFEL	0	0	1		ENSG00000109762|ENST00000652585|SNX25;nc|ENSG00000109762|Q9H3E2|SNX25;ENST00000466217.5_1_2:220090131-220093204:-|nuORF;ENST00000504959.5_1_4:186260544-186290945:+|nuORF;nc|ENSG00000109762|Q9H3E2-2|SNX25;nc|ENSG00000198925|Q7Z3C6-3|ATG9A;nc|ENSG00000198925|Q7Z3C6-2|ATG9A;ENSG00000198925|ENST00000361242|ATG9A	ENSG00000109762|ENST00000652585|SNX25;nc|ENSG00000198925|Q7Z3C6-3|ATG9A	ENSG00000109762|ENST00000652585|SNX25	MSMS	A375_MHC_IP_R1	1	541.18505859375	2	540.785918	1079.55728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.13	1	132.13	131.63	132.63	0								0	0	0	0.027545	1	50947	50947		70.716	17.14	1				35921	2890;9373	26307	26501	34929	34929		134			0.02068731791268874
MLIGEIFEL	9	Unmodified	_MLIGEIFEL_					0	0	0		ENSG00000109762|ENST00000652585|SNX25;nc|ENSG00000109762|Q9H3E2|SNX25;ENST00000466217.5_1_2:220090131-220093204:-|nuORF;ENST00000504959.5_1_4:186260544-186290945:+|nuORF;nc|ENSG00000109762|Q9H3E2-2|SNX25;nc|ENSG00000198925|Q7Z3C6-3|ATG9A;nc|ENSG00000198925|Q7Z3C6-2|ATG9A;ENSG00000198925|ENST00000361242|ATG9A	ENSG00000109762|ENST00000652585|SNX25;nc|ENSG00000198925|Q7Z3C6-3|ATG9A	ENSG00000109762|ENST00000652585|SNX25	MULTI-SECPEP	A375_MHC_IP_R1	1	533.0364379882812	2	532.788461	1063.56237	-0.91693	-0.00048853	0.41533	0.00022128	-0.5016	-0.00026725	532.7885207893523	135.16	0.2049	135.16	135.03	135.23	0					5	3	2	0	0	0	0.47368	1	52118	52118		34.102	12.356	1	3380200			35922	2890;9373	26307	26502	34930	34930					0.03313035653877705
MLILSREW	8	Unmodified	_MLILSREW_					0	0	0			REV__ENST00000508913.5_1_5:43043449-43044931:+|nuORF	REV__ENST00000508913.5_1_5:43043449-43044931:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	524.7078247070312	2	524.28642	1046.55829	-0.45398	-0.00023802	-2.3416	-0.0012277	-2.7956	-0.0014657	524.284748638733	98.514	0.35841	98.514	98.3	98.659	0					12	6	3	0	0	0	0.7338	1	36127	36127		24.674	2.9272	1	1203900	+		35923	25587	26308	26503	34931	34931					0.03686990950814106
MLIPMASV	8	Unmodified	_MLIPMASV_					0	0	0		ENSG00000198855|ENST00000552695|FICD	ENSG00000198855|ENST00000552695|FICD	ENSG00000198855|ENST00000552695|FICD	MSMS	A375_MHC_IP_R2	2	431.2875061035156	2	431.232267	860.449982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.618	1	53.37	52.87	53.87	0.75225								0	0	0	0.16876	1	19837	19837		9.3474	3.587	1				35924	9351	26309	26504	34932	34932					0.01417483376042128
MLIVFHWKY	9	Unmodified	_MLIVFHWKY_					0	0	0		GLT8D2|p.G279W|1|0.1|ENSG00000120820|chr12:103993437-103993437|C/A|missense_variant	GLT8D2|p.G279W|1|0.1|ENSG00000120820|chr12:103993437-103993437|C/A|missense_variant	GLT8D2|p.G279W|1|0.1|ENSG00000120820|chr12:103993437-103993437|C/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	413.2908630371094	3	412.89145	1235.65252	0.30406	0.00012554	-1.1947	-0.00049329	-0.89066	-0.00036774	412.8909711576573	20.322	0.45658	20.322	20.079	20.536	0					17	8	3	0	0	0	0.65527	1	5175	5175		12.241	0	1	2057500			35925	14053	26310	26505	34933	34933					0.04412129772981643
MLKEATLK	8	Unmodified	_MLKEATLK_					0	0	0			REV__ENSG00000206073|ENST00000341074|SERPINB4	REV__ENSG00000206073|ENST00000341074|SERPINB4	MSMS	A375_MHC_IP_R1	1	467.3421936035156	2	467.275521	932.536489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.06	1	141.06	140.56	141.56	0								0	0	0	0.16876	1	54158	54158		5.2307	0	1		+		35926	16425	26311	26506	34934	34934					0.06752186202243138
MLKLFIIDMLF	11	Unmodified	_MLKLFIIDMLF_					0	0	0		TMC3|p.S512F|1|0.22|ENSG00000188869|chr15:81344029-81344029|G/A|missense_variant	TMC3|p.S512F|1|0.22|ENSG00000188869|chr15:81344029-81344029|G/A|missense_variant	TMC3|p.S512F|1|0.22|ENSG00000188869|chr15:81344029-81344029|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	462.33056640625	3	461.930806	1382.77059	-0.42619	-0.00019687	0.0026713	1.2339E-06	-0.42352	-0.00019564	461.93080890243573	19.293	0.19848	19.293	19.221	19.42	0					7	5	2	0	0	0	0.99999	1	4767	4767		3.0723	1.6171	1	9601000			35927	29355	26312	26507	34935	34935					0.0945132124659267
MLKRKMKP	8	Unmodified	_MLKRKMKP_					0	0	0		GRXCR1|p.E5K|1|0.35|ENSG00000215203|chr4:42893279-42893279|G/A|missense_variant	GRXCR1|p.E5K|1|0.35|ENSG00000215203|chr4:42893279-42893279|G/A|missense_variant	GRXCR1|p.E5K|1|0.35|ENSG00000215203|chr4:42893279-42893279|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	516.7097778320312	2	516.314457	1030.61436	-0.78764	-0.00040667	-0.64581	-0.00033344	-1.4335	-0.00074011	516.3139928484222	132.77	0.91945	132.77	132.59	133.51	0					42	17	5	0	0	0	0.972	1	51416	51416		2.3027	0	1	91511000			35928	14094	26313	26508	34936	34936					0.10027920586639993
MLKRQRIKREK	11	Unmodified	_MLKRQRIKREK_					0	0	0		ENSG00000169981|ENST00000396056|ZNF35	ENSG00000169981|ENST00000396056|ZNF35	ENSG00000169981|ENST00000396056|ZNF35	MULTI-SECPEP	A375_MHC_IP_R2	2	743.0571899414062	2	743.461561	1484.90857	-0.81549	-0.00060629	2.6691	0.0019844	1.8536	0.0013781	743.9650015445601	125.15	0.25357	125.45	125.32	125.57	0.2951					5	4	2	0	0	0	0.99955	1	48671	48671		1.1933	1.1933	1	127380000			35929	7460	26314	26509	34937	34937					0.18551205610083343
MLKRQTINYLS	11	Unmodified	_MLKRQTINYLS_					0	0	0			REV__ENST00000368678.8_1_6:112020843-112024153:-|nuORF	REV__ENST00000368678.8_1_6:112020843-112024153:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	456.65496826171875	3	456.255228	1365.74386	-0.69831	-0.00031861	0.073355	3.3468E-05	-0.62496	-0.00028514	456.2552304858155	25.442	0.61022	26.086	25.924	26.535	0.64368					36	11	4	0	0	0	0.59166	1	8519	8519		23.964	6.9156	1	8455200	+		35930	24000	26315	26510	34938	34938					0.07561348679632829
MLKRQTINYLS	11	Unmodified	_MLKRQTINYLS_					0	0	0			REV__ENST00000368678.8_1_6:112020843-112024153:-|nuORF	REV__ENST00000368678.8_1_6:112020843-112024153:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	456.255228	1365.74386	-0.69831	-0.00031861	0.073355	3.3468E-05	-0.62496	-0.00028514	456.2552304858155	25.442	0.61022	26.086	25.924	26.535	0.64368	-0.03202	4.2585E-05	NaN	23.964	36	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8455200	+		35931	24000	26315	26510							0.07561348679632829
MLLAESSV	8	Unmodified	_MLLAESSV_					0	0	0			REV__ENSG00000183655|ENST00000337975|KLHL25	REV__ENSG00000183655|ENST00000337975|KLHL25	MSMS	A375_MHC_IP_R2	2	425.1308898925781	2	425.222954	848.431355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.643	1	50.398	49.898	50.898	0.75555								0	0	0	0.16876	1	18656	18656		11.114	0	1		+		35932	21767	26316	26511	34939	34939					0.00107645005834911
MLLEGLREL	9	Unmodified	_MLLEGLREL_					0	0	0		nc|ENSG00000126756|Q9UBK9-2|UXT;ENSG00000126756|ENST00000333119|UXT	nc|ENSG00000126756|Q9UBK9-2|UXT	nc|ENSG00000126756|Q9UBK9-2|UXT	MULTI-MSMS	A375_MHC_IP_R2	2	537.70751953125	2	537.30481	1072.59507	-0.77299	-0.00041533	0.23896	0.0001284	-0.53403	-0.00028693	537.3049728685919	91.007	3.4973	91.742	91.058	94.556	0.73451					165	68	5	0	0	0	0.11629	1	34516	34516		47.749	3.8904	1	121920000			35933	4057	26317	26512	34940	34940					0.061672427767234694
MLLEKMIDP	9	Unmodified	_MLLEKMIDP_					0	0	0			REV__tr|U7SLU1|U7SLU1_FUSNUGlycerophosphoryldiesterphosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01892PE=4SV=1	REV__tr|U7SLU1|U7SLU1_FUSNUGlycerophosphoryldiesterphosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01892PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	546.6846313476562	2	545.287771	1088.56099	-0.70261	-0.00038312	0.081245	4.4302E-05	-0.62136	-0.00033882	545.287934349099	69.195	1.2678	69.93	69.221	70.489	0.73511					64	24	4	0	0	0	0.55471	1	26090	26090		17.113	17.113	1	19988000	+		35934	28279	26318	26513	34941	34941					0.02025078293468141
MLLGVFLNN	9	Unmodified	_MLLGVFLNN_					0	0	0			REV__ENSG00000070269|ENST00000261556|TMEM260	REV__ENSG00000070269|ENST00000261556|TMEM260	MSMS	A375_MHC_IP_R1	1	510.6789245605469	2	510.78097	1019.54739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.703	1	30.703	30.203	31.203	0								0	0	0	0.15283	1	9780	9780		16.942	1.0951	1		+		35935	16571	26319	26514	34942	34942					0.03839588576522601
MLLKLKKKA	9	Unmodified	_MLLKLKKKA_					0	0	0		CMA1|p.E118K|1|0.2|ENSG00000092009|chr14:24506276-24506276|C/T|missense_variant	CMA1|p.E118K|1|0.2|ENSG00000092009|chr14:24506276-24506276|C/T|missense_variant	CMA1|p.E118K|1|0.2|ENSG00000092009|chr14:24506276-24506276|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	536.6366577148438	2	536.86738	1071.72021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.476	1	95.221	94.721	95.721	0.74474								0	0	0	0.15486	1	35903	35903		0.6015	0	1				35936	541	26320	26515	34943	34943					0.187215797037652
MLLKRIFPC	9	Unmodified	_MLLKRIFPC_					0	0	0			REV__ENST00000312465.11_1_4:81209004-81209070:+|nuORF	REV__ENST00000312465.11_1_4:81209004-81209070:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	374.6172180175781	3	374.217169	1119.62968	0.35365	0.00013234	-1.0993	-0.00041136	-0.74561	-0.00027902	374.2169038924305	59.88	1.1175	59.88	59.397	60.514	0					32	21	3	0	0	0	0.69317	1	21537	21537		7.609	7.609	1	4336600	+		35937	23515	26321	26516	34944	34944					0.07464787383833027
MLLKRIFPC	9	Unmodified	_MLLKRIFPC_					0	0	0			REV__ENST00000312465.11_1_4:81209004-81209070:+|nuORF	REV__ENST00000312465.11_1_4:81209004-81209070:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	374.94586181640625	3	374.217169	1119.62968	0.35365	0.00013234	-1.0993	-0.00041136	-0.74561	-0.00027902	374.2169038924305	59.88	1.1175	59.88	59.397	60.514	0					32	21	3	0	0	0	0.80535	1	21633	21633		4.5289	0.33936	1	4336600	+		35938	23515	26321	26516	34945	34945					0.07464787383833027
MLLRLKSVLY	10	Unmodified	_MLLRLKSVLY_					0	0	0		nc|ENSG00000170289|Q9NQW8-2|CNGB3;ENSG00000170289|ENST00000320005|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	MSMS	A375_MHC_IP_R2	2	618.7271118164062	2	618.380852	1234.74715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.527	1	91.261	90.761	91.761	0.7345								0	0	0	0.15398	1	34444	34444		7.9102	4.3137	1				35939	7489	26322	26517	34946	34946					0.13916643524316896
MLLSVPLLL	9	Unmodified	_MLLSVPLLL_					0	0	0		ENSG00000179218|ENST00000316448|CALR;ENST00000590325.1_1_19:13049472-13051084:+|nuORF;ENST00000587486.6_1_19:13049472-13049670:+|nuORF	ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	MULTI-SECPEP	A375_MHC_IP_R1	1	500.21917724609375	2	499.819564	997.624575	-0.68881	-0.00034428	0.20241	0.00010117	-0.4864	-0.00024311	499.8195694143552	137.2	0.25761	137.2	137.08	137.33	0					6	4	2	0	0	0	0.23974	1	52846	52846		49.669	19.444	1	1394800			35940	8214	26323	26518	34947	34947					0.12566806792892748
MLLSVPLLL	9	Unmodified	_MLLSVPLLL_					0	0	0		ENSG00000179218|ENST00000316448|CALR;ENST00000590325.1_1_19:13049472-13051084:+|nuORF;ENST00000587486.6_1_19:13049472-13049670:+|nuORF	ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	MULTI-SECPEP	A375_MHC_IP_R2	2	500.21905517578125	2	499.819564	997.624575	-0.37813	-0.000189	-0.12198	-6.0968E-05	-0.50011	-0.00024996	499.8192697543679	137.09	0.30954	137.2	137.07	137.38	0.11134					7	5	2	0	0	0	0.67221	1	53844	53844		19.439	1.304	1	1427000			35941	8214	26323	26518	34948	34948					0.12566806792892748
MLLSVPLLLG	10	Unmodified	_MLLSVPLLLG_					0	0	0		ENSG00000179218|ENST00000316448|CALR;ENST00000590325.1_1_19:13049472-13051084:+|nuORF;ENST00000587486.6_1_19:13049472-13049670:+|nuORF	ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	MULTI-SECPEP	A375_MHC_IP_R1	1	528.7297973632812	2	528.330296	1054.64604	-0.82175	-0.00043415	-0.72327	-0.00038212	-1.545	-0.00081628	528.3298017882934	136.02	0.76523	136.02	135.44	136.2	0					22	14	3	0	0	0	0.10302	1	52430	52430		77.984	35.89	1	6791300			35942	8214	26324	26519	34949	34949					0.12090191821584995
MLLSVPLLLG	10	Unmodified	_MLLSVPLLLG_					0	0	0		ENSG00000179218|ENST00000316448|CALR;ENST00000590325.1_1_19:13049472-13051084:+|nuORF;ENST00000587486.6_1_19:13049472-13049670:+|nuORF	ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	MULTI-SECPEP	A375_MHC_IP_R2	2	528.7294921875	2	528.330296	1054.64604	-0.37668	-0.00019901	-1.0338	-0.00054619	-1.4105	-0.0007452	528.3295609733776	135.91	0.81735	136.02	135.38	136.2	0.11134					24	15	3	0	0	0	0.028105	1	53410	53410		85.357	34.502	1	4085900			35943	8214	26324	26519	34950	34950					0.12090191821584995
MLLTQRLDPSL	11	Unmodified	_MLLTQRLDPSL_					0	0	0			REV__nc|ENSG00000135637|Q17RM4-3|CCDC142	REV__nc|ENSG00000135637|Q17RM4-3|CCDC142	MSMS	A375_MHC_IP_R1	1	429.6453857421875	3	429.576079	1285.70641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.831	1	42.831	42.331	43.331	0								0	0	0	0.15541	1	14859	14859		9.7643	0.52048	1		+		35944	18872	26325	26520	34951	34951					0.07498257414022191
MLLYLDRRTSM	11	Unmodified	_MLLYLDRRTSM_					0	0	0			REV__ENST00000343889.8_1_1:2411150-2434522:+|nuORF	REV__ENST00000343889.8_1_1:2411150-2434522:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	467.3109130859375	3	466.912585	1397.71593	-0.92502	-0.0004319	-1.7743	-0.00082844	-2.6993	-0.0012603	466.91141576241483	58.205	0.91141	58.954	58.477	59.389	0.74894					21	17	2	0	0	0	0.99681	1	22046	22046		4.4062	0	1	2297000	+		35945	19686	26326	26521	34952	34952					0.03297702427880722
MLLYQWRRDP	10	Unmodified	_MLLYQWRRDP_					0	0	0			REV__SF3A2|p.A172V|1|0.22|ENSG00000104897|chr19:2246991-2246991|C/T|missense_variant	REV__SF3A2|p.A172V|1|0.22|ENSG00000104897|chr19:2246991-2246991|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	690.1473388671875	2	689.358439	1376.70233	-0.55983	-0.00038592	-1.0356	-0.00071392	-1.5955	-0.0010998	689.8589367567641	101.76	0.40282	101.76	101.5	101.9	0					9	7	2	0	0	0	0.93799	1	37438	37438		6.7232	5.3936	1	1810000	+		35946	17349	26327	26522	34953	34953					0.0290421271095056
MLNNVSAESL	10	Unmodified	_MLNNVSAESL_					0	0	0			REV__nc|ENSG00000008838|O75448-2|MED24	REV__nc|ENSG00000008838|O75448-2|MED24	MULTI-SECPEP	A375_MHC_IP_R2	2	539.664306640625	2	539.265881	1076.51721	-0.75622	-0.0004078	-2.2616	-0.0012196	-3.0178	-0.0016274	539.2642415748393	91.007	0.30211	91.742	91.566	91.868	0.7345					7	5	2	0	0	0	0.91556	1	34657	34657		10.074	3.8681	1	1520900	+		35947	16179	26328	26523	34954	34954					-0.017988148793165237
MLNQRKWKKRK	11	Unmodified	_MLNQRKWKKRK_					0	0	0		ENST00000424556.2_1_11:1856509-1858658:+|nuORF;ENSG00000149043|ENST00000341958|SYT8	ENST00000424556.2_1_11:1856509-1858658:+|nuORF	ENST00000424556.2_1_11:1856509-1858658:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	505.77130126953125	3	505.973278	1514.89801	-0.5297	-0.00026801	2.9275	0.0014813	2.3978	0.0012132	505.97503559506197	142.48	1.7854	142.51	141.05	142.84	0.030731					69	34	3	0	0	0	0.73902	1	55536	55536		0.08335	0	1	3678600			35948	5778	26329	26524	34955	34955					0.16115222955613717
MLPHAPGV	8	Oxidation (M)	_M(Oxidation (M))LPHAPGV_		M(1)LPHAPGV		M(77)LPHAPGV	0	0	1		ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	A375_MHC_IP_R1	1	419.6178283691406	2	419.218006	836.421459	0.28179	0.00011813	-0.39762	-0.00016669	-0.11583	-4.8558E-05	419.21780306572504	39.185	1.0137	39.185	38.78	39.794	0					36	19	2	0	0	0	0.16638	1	13304	13304		77.196	52.986	1	9001200			35949	3399	26330	26525	34956	34956		171			-0.0032949820887324677
MLPHAPGV	8	Oxidation (M)	_M(Oxidation (M))LPHAPGV_		M(1)LPHAPGV		M(64)LPHAPGV	0	0	1		ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-SECPEP	A375_MHC_IP_R2	2	419.6178283691406	2	419.218006	836.421459	-0.42084	-0.00017642	0.0024376	1.0219E-06	-0.4184	-0.0001754	419.2179284566206	38.333	0.91716	39.107	38.791	39.708	0.77451					36	17	3	0	0	0	0.16399	1	14050	14050		64.081	39.871	1	6424700			35950	3399	26330	26525	34957	34957		171			-0.0032949820887324677
MLPHAPGV	8	Unmodified	_MLPHAPGV_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-SECPEP	A375_MHC_IP_R1	1	411.6206970214844	2	411.220549	820.426544	0.53619	0.00022049	-0.25395	-0.00010443	0.28224	0.00011606	411.2203507747926	45.212	0.55538	45.212	44.928	45.484	0					23	10	3	0	0	0	0.56184	1	15776	15776		32.454	15.367	1	4506000			35951	3399	26330	26526	34958	34958					0.009148056537355842
MLPHAPGV	8	Unmodified	_MLPHAPGV_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-SECPEP	A375_MHC_IP_R2	2	411.62054443359375	2	411.220549	820.426544	0.050837	2.0905E-05	-0.26166	-0.0001076	-0.21083	-8.6696E-05	411.2203926818704	44.391	0.50707	45.16	44.833	45.34	0.76909					22	9	3	0	0	0	0.16399	1	16531	16531		91.927	59.473	1	6639600			35952	3399	26330	26526	34959	34959					0.009148056537355842
MLPLFHTKL	9	Unmodified	_MLPLFHTKL_					0	0	0			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MULTI-SECPEP	A375_MHC_IP_R2	2	366.9550476074219	3	367.215934	1098.62597	-0.023797	-8.7386E-06	2.1781	0.00079983	2.1543	0.00079109	367.21725396443816	49	0.40785	49.758	49.536	49.944	0.75737					9	7	2	0	0	0	0.74651	1	18415	18415		2.7352	0.23671	1	845020	+		35953	22389	26331	26527	34960	34960					0.08060440881627073
MLPLLLLL	8	Unmodified	_MLPLLLLL_					0	0	0			REV__ENSG00000189377|ENST00000601181|CXCL17	REV__ENSG00000189377|ENST00000601181|CXCL17	MULTI-MSMS	A375_MHC_IP_R1	1	927.7431640625	1	925.615473	924.608197	0.27649	0.00025592	-1.7257	-0.0015974	-1.4492	-0.0013414	925.6156650693268	116.08	0.91479	116.08	115.63	116.55	0					35	17	3	0	0	0	0.77839	1	42537	42537		0.79363	0	1	8535200	+		35954	22152	26332	26528	34961	34961					0.14287725626775227
MLPLLLLL	8	Unmodified	_MLPLLLLL_					0	0	0			REV__ENSG00000189377|ENST00000601181|CXCL17	REV__ENSG00000189377|ENST00000601181|CXCL17	MULTI-SECPEP	A375_MHC_IP_R1	1	924.833740234375	1	925.615473	924.608197	0.27649	0.00025592	-1.7257	-0.0015974	-1.4492	-0.0013414	925.6156650693268	116.08	0.91479	116.08	115.63	116.55	0					35	17	3	0	0	0	0.972	1	42420	42420		0	0	1	8535200	+		35955	22152	26332	26528	34962	34962					0.14287725626775227
MLPPPPLTA	9	Unmodified	_MLPPPPLTA_					0	0	0		nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1	nc|ENSG00000105486|P18858-2|LIG1	nc|ENSG00000105486|P18858-2|LIG1	MULTI-MSMS	A375_MHC_IP_R1	1	469.1648864746094	2	468.764789	935.515025	-0.5148	-0.00024132	0.43819	0.00020541	-0.076612	-3.5913E-05	468.76491917437716	90.388	1.3183	90.388	89.78	91.098	0					51	25	3	0	0	0	0.01789	1	33158	33158		86.121	47.97	1	2263100			35956	2610	26333	26529	34963	34963					0.0446880117353885
MLPPPPLTA	9	Unmodified	_MLPPPPLTA_					0	0	0		nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1	nc|ENSG00000105486|P18858-2|LIG1	nc|ENSG00000105486|P18858-2|LIG1	MULTI-MSMS	A375_MHC_IP_R2	2	469.1646423339844	2	468.764789	935.515025	-0.52706	-0.00024707	1.2306	0.00057684	0.70351	0.00032978	468.76484193608735	89.542	1.3188	90.273	89.685	91.004	0.7318					65	25	4	0	0	0	0.0094581	2	34002	34002;34256		106.85	68.694	1	3025700			35957	2610	26333	26529	34964;34965	34964					0.0446880117353885
MLPPPPLTA	9	Oxidation (M)	_M(Oxidation (M))LPPPPLTA_		M(1)LPPPPLTA		M(67)LPPPPLTA	0	0	1		nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1	nc|ENSG00000105486|P18858-2|LIG1	nc|ENSG00000105486|P18858-2|LIG1	MULTI-SECPEP	A375_MHC_IP_R1	1	477.16168212890625	2	476.762246	951.50994	-0.5213	-0.00024853	0.14655	6.9872E-05	-0.37474	-0.00017866	476.76223930487384	76.969	2.994	76.969	75.915	78.909	0					79	58	2	0	0	0	0.057343	1	28119	28119		67.035	24.941	1	2276800			35958	2610	26333	26530	34966	34966		118			0.03224497310930019
MLPPPPLTA	9	Oxidation (M)	_M(Oxidation (M))LPPPPLTA_		M(1)LPPPPLTA		M(99)LPPPPLTA	0	0	1		nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1	nc|ENSG00000105486|P18858-2|LIG1	nc|ENSG00000105486|P18858-2|LIG1	MULTI-SECPEP	A375_MHC_IP_R2	2	477.16229248046875	2	476.762246	951.50994	-0.52837	-0.00025191	0.0023915	1.1402E-06	-0.52598	-0.00025077	476.7622619019117	76.077	1.5256	76.817	75.925	77.451	0.74052					55	29	2	0	0	0	0.027731	1	28931	28931		98.807	68.582	1	3263700			35959	2610	26333	26530	34967	34967		118			0.03224497310930019
MLPPPPLTA	9	Oxidation (M)	_M(Oxidation (M))LPPPPLTA_		M(1)LPPPPLTA		M(64)LPPPPLTA	0	0	1		nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1	nc|ENSG00000105486|P18858-2|LIG1	nc|ENSG00000105486|P18858-2|LIG1	MULTI-SECPEP	A375_MHC_IP_R2	2	477.162353515625	2	476.762246	951.50994	-0.53449	-0.00025482	-0.099698	-4.7532E-05	-0.63419	-0.00030236	476.7621745044828	77.32	1.8314	78.063	77.453	79.285	0.74293					61	35	2	0	0	0	0.068175	1	29209	29209		63.563	33.338	1	1150100			35960	2610	26333	26530	34968	34968		118			0.03224497310930019
MLQNSAVLL	9	Unmodified	_MLQNSAVLL_					0	0	0		ENSG00000159167|ENST00000290271|STC1	ENSG00000159167|ENST00000290271|STC1	ENSG00000159167|ENST00000290271|STC1	MULTI-MSMS	A375_MHC_IP_R2	2	495.1781921386719	2	494.778428	987.542302	-0.40071	-0.00019826	0.19998	9.8946E-05	-0.20073	-9.9316E-05	494.77847196338377	95.899	0.60972	96.65	96.347	96.957	0.75045					17	11	2	0	0	0	0.11296	1	36410	36410		48.346	10.195	1	1233400			35961	6355	26334	26531	34969	34969					0.0480328471392113
MLQNSAVLL	9	Unmodified	_MLQNSAVLL_					0	0	0		ENSG00000159167|ENST00000290271|STC1	ENSG00000159167|ENST00000290271|STC1	ENSG00000159167|ENST00000290271|STC1	MULTI-MATCH	A375_MHC_IP_R1	1		2	494.778428	987.542302	-0.28974	-0.00014336	-0.4777	-0.00023635	-0.76744	-0.00037971	494.77841621334983	96.728	0.50696	96.728	96.478	96.985	0	0.039038	-0.00021861	NaN	48.346	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	773110			35962	6355	26334	26531							0.0480328471392113
MLRAPPRM	8	Unmodified	_MLRAPPRM_					0	0	0			REV__ENST00000514820.1_1_3:129918586-129918748:+|nuORF	REV__ENST00000514820.1_1_3:129918586-129918748:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	486.6911926269531	2	486.267507	970.520461	-0.31286	-0.00015214	-1.3222	-0.00064295	-1.6351	-0.00079508	486.26671898711925	119.32	0.20203	119.32	119.23	119.44	0					5	3	2	0	0	0	0.70843	1	44098	44098		32.117	1.8922	1	4771900	+		35963	25653	26335	26532	34970	34970					0.034022014843571924
MLRAPPRM	8	Unmodified	_MLRAPPRM_					0	0	0			REV__ENST00000514820.1_1_3:129918586-129918748:+|nuORF	REV__ENST00000514820.1_1_3:129918586-129918748:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	486.267507	970.520461	-0.31286	-0.00015214	-1.3222	-0.00064295	-1.6351	-0.00079508	486.26671898711925	119.32	0.20203	119.32	119.23	119.44	0	0	0	NaN	32.117	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4771900	+		35964	25653	26335	26532							0.034022014843571924
MLRRLFFCRWI	11	Unmodified	_MLRRLFFCRWI_					0	0	0		ENST00000356136.7_2_11:75599912-75672525:+|nuORF	ENST00000356136.7_2_11:75599912-75672525:+|nuORF	ENST00000356136.7_2_11:75599912-75672525:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	514.6981811523438	3	514.284576	1539.8319	-0.76157	-0.00039166	-1.6657	-0.00085663	-2.4272	-0.0012483	514.2840153779247	133.18	0.66464	133.18	132.69	133.36	0					16	12	2	0	0	0	1.0012	1	51391	51391		0.40827	0.40827	1	1587200			35965	10960	26336	26533	34971	34971					0.08357690789262051
MLRRLFFCRWI	11	Unmodified	_MLRRLFFCRWI_					0	0	0		ENST00000356136.7_2_11:75599912-75672525:+|nuORF	ENST00000356136.7_2_11:75599912-75672525:+|nuORF	ENST00000356136.7_2_11:75599912-75672525:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	514.284576	1539.8319	-0.69597	-0.00035793	-1.6822	-0.00086512	-2.3781	-0.001223	514.2836847858935	133.02	0.40582	133.19	132.99	133.4	0.16487	0.00609	-1.6699E-05	NaN	0.40827	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1276400			35966	10960	26336	26533							0.08357690789262051
MLSILPVLPI	10	Unmodified	_MLSILPVLPI_					0	0	0			REV__ENST00000543872.6_1_17:57288025-57288112:+|nuORF	REV__ENST00000543872.6_1_17:57288025-57288112:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6709594726562	2	548.345946	1094.67734	-0.70033	-0.00038402	2.2033	0.0012082	1.5029	0.00082413	548.3482501394805	94.573	0.1535	94.573	94.497	94.651	0					4	2	2	0	0	0	0.93615	1	34760	34760		3.9444	0.66309	1	585010	+		35967	25981	26337	26534	34972	34972					0.13378764855679037
MLSIYLLF	8	Unmodified	_MLSIYLLF_					0	0	0		ENST00000527932.1_1_1:46080644-46081380:+|nuORF	ENST00000527932.1_1_1:46080644-46081380:+|nuORF	ENST00000527932.1_1_1:46080644-46081380:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	500.6817626953125	2	500.282815	998.551076	-0.5293	-0.0002648	0.17167	8.5881E-05	-0.35763	-0.00017892	500.2825497094055	126.01	1.5654	126.31	125.62	127.19	0.2951					73	30	4	0	0	0	0.77603	1	49127	49127		9.3474	0	1	23081000			35968	13109	26338	26535	34973	34973					0.051742583504051254
MLSKFLTMK	9	Unmodified	_MLSKFLTMK_					0	0	0			REV__nc|ENSG00000054654|Q8WXH0|SYNE2	REV__nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-SECPEP	A375_MHC_IP_R2	2	367.2737121582031	3	366.873179	1097.59771	0.19293	7.0781E-05	0.55126	0.00020224	0.74419	0.00027302	366.8733041892706	46.015	0.4053	46.78	46.603	47.008	0.76519					11	7	2	0	0	0	0.74597	1	17259	17259		16.566	7.1828	1	3107700	+		35969	16407	26339	26536	34974	34974					0.05281374910032355
MLSPSTQLL	9	Unmodified	_MLSPSTQLL_					0	0	0		nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;PTPRZ1|p.N1301Tfs*23|1|0.25|ENSG00000106278|chr7:122012947-122012947|A/-|frameshift_variant	nc|ENSG00000106278|P23471-2|PTPRZ1	nc|ENSG00000106278|P23471-2|PTPRZ1	MULTI-MSMS	A375_MHC_IP_R2	2	495.6971740722656	2	495.270435	988.526318	-0.41431	-0.00020519	2.3334	0.0011557	1.9191	0.00095047	495.2722536583515	63.622	1.1168	64.362	63.734	64.85	0.74022					28	21	2	0	0	0	0.32092	1	24039	24039		29.082	0	1	1986500			35970	2679	26340	26537	34975	34975					0.03159578477038849
MLSQDAPTV	9	Unmodified	_MLSQDAPTV_					0	0	0		ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	MULTI-MSMS	A375_MHC_IP_R2	2	481.6365966796875	2	481.236593	960.458632	-0.86276	-0.00041519	-0.39653	-0.00019083	-1.2593	-0.00060602	481.23657001004364	54.22	0.40586	54.971	54.712	55.118	0.75075					11	7	2	0	0	0	0.13797	1	20487	20487		43.858	13.222	1	1875800			35971	2496	26341	26538	34976	34976					-0.023178714537948508
MLTRAPDIS	9	Unmodified	_MLTRAPDIS_					0	0	0			REV__ENSG00000241360|ENST00000215904|PDXP	REV__ENSG00000241360|ENST00000215904|PDXP	MSMS	A375_MHC_IP_R1	1	502.1953430175781	2	502.265684	1002.51682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.064	1	51.064	50.564	51.564	0								0	0	0	0.1521	1	18113	18113		18.146	3.3081	1		+		35972	22787	26342	26539	34977	34977					0.015658101914937106
MLTSANLEEA	10	Unmodified	_MLTSANLEEA_					0	0	0			REV__ENST00000570934.5_1_17:4098183-4145738:-|nuORF	REV__ENST00000570934.5_1_17:4098183-4145738:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	540.1813354492188	2	539.757889	1077.50123	-0.94238	-0.00050866	-0.014411	-7.7785E-06	-0.95679	-0.00051644	540.2588498862444	136.18	0.56418	136.18	135.79	136.36	0					13	10	2	0	0	0	0.71118	1	52415	52415		7.2892	0.56607	1	1401400	+		35973	21913	26343	26540	34978	34978					-0.034425211161988045
MLTWLPLW	8	Unmodified	_MLTWLPLW_					0	0	0			REV__ENST00000506359.1_1_4:73012322-73013526:+|nuORF	REV__ENST00000506359.1_1_4:73012322-73013526:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	530.6885375976562	2	530.288431	1058.56231	-0.66155	-0.00035081	0.27729	0.00014704	-0.38426	-0.00020377	530.289323050129	128.83	0.45462	129.07	128.76	129.21	0.23946					13	8	2	0	0	0	0.64599	1	50627	50627		42.968	0.87343	1	8263600	+		35974	16421	26344	26541	34979	34979					0.03537080444539242
MLVACTKRPIT	11	Unmodified	_MLVACTKRPIT_					0	0	0			REV__ENST00000609281.1_1_7:105926403-105926484:+|nuORF	REV__ENST00000609281.1_1_7:105926403-105926484:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	411.9665832519531	3	411.566638	1231.67808	-0.2822	-0.00011615	0.019921	8.199E-06	-0.26228	-0.00010795	411.56663963692984	19.562	0.55701	20.172	19.942	20.499	0.61029					18	10	2	0	0	0	0.72883	1	6042	6042		10.016	4.1481	1	1625100	+		35975	26566	26345	26542	34980	34980					0.07151236233062264
MLVLFGVCV	9	Unmodified	_MLVLFGVCV_					0	0	0			REV__ENSG00000139182|ENST00000266546|CLSTN3	REV__ENSG00000139182|ENST00000266546|CLSTN3	MSMS	A375_MHC_IP_R2	2	490.93994140625	2	490.769017	979.523481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.319	1	64.06	63.56	64.56	0.74022								0	0	0	0.15427	1	24004	24004		14.582	1.0738	1		+		35976	19140	26346	26543	34981	34981					0.032900318185056676
MLWPSPLFWTL	11	Unmodified	_MLWPSPLFWTL_					0	0	0			REV__ENST00000537345.5_1_1:116941641-116942090:+|nuORF	REV__ENST00000537345.5_1_1:116941641-116942090:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	464.1502685546875	3	464.245782	1389.71552	-0.65012	-0.00030182	4.0487	0.0018796	3.3985	0.0015778	464.58086572828756	30.265	0.75814	30.983	30.759	31.517	0.71857					27	14	4	0	0	0	0.99883	1	10709	10709		4.7159	2.4632	1	3215300	+		35977	25922	26347	26544	34982	34982					0.03624650770370863
MLWRLHWRRL	10	Unmodified	_MLWRLHWRRL_					0	0	0		nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;ENST00000465966.4_1_6:30861134-30864801:+|nuORF;DDR1|p.T531Hfs*21|1|0.45|ENSG00000204580|chr6:30895473-30895474|-/C|frameshift_variant	nc|ENSG00000204580|Q08345-2|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	MSMS	A375_MHC_IP_R1	1	734.2529296875	2	733.919333	1465.82411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.85	1	101.85	101.35	102.35	0								0	0	0	0.15585	1	37428	37428		1.8442	0	1				35978	9460	26348	26545	34983	34983					0.10983299583972439
MLWRLHWRRLL	11	Unmodified	_MLWRLHWRRLL_					0	0	0		nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;ENST00000465966.4_1_6:30861134-30864801:+|nuORF;DDR1|p.T531Hfs*21|1|0.45|ENSG00000204580|chr6:30895473-30895474|-/C|frameshift_variant	nc|ENSG00000204580|Q08345-2|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	MULTI-SECPEP	A375_MHC_IP_R2	2	790.891357421875	2	790.461365	1578.90818	-0.78495	-0.00062048	-0.40565	-0.00032065	-1.1906	-0.00094113	790.962552904635	148.79	1.7431	148.81	147.79	149.53	0.018707					132	47	4	0	0	0	1.0015	1	57586	57586		0	0	1	550630			35979	9460	26349	26546	34984	34984					0.14187830680884872
MLYFRIRFYFW	11	Unmodified	_MLYFRIRFYFW_					0	0	0		TYK2|p.R110W|1|0.24|ENSG00000105397|chr19:10368192-10368192|G/A|missense_variant	TYK2|p.R110W|1|0.24|ENSG00000105397|chr19:10368192-10368192|G/A|missense_variant	TYK2|p.R110W|1|0.24|ENSG00000105397|chr19:10368192-10368192|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	547.7101440429688	3	547.95148	1640.83261	-0.56243	-0.00030819	3.3106	0.0018141	2.7482	0.0015059	547.9522141454572	79.853	0.15273	79.853	79.778	79.931	0					4	2	2	0	0	0	1.0014	1	29135	29135		0.50596	0.50596	1	548570			35980	30102	26350	26547	34985	34985					0.03782808709956953
MLYLLDQFVKQ	11	Unmodified	_MLYLLDQFVKQ_					0	0	0			REV__nc|ENSG00000173898|O15020-2|SPTBN2	REV__nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-MSMS	A375_MHC_IP_R1	1	699.7776489257812	2	699.378506	1396.74246	-0.84235	-0.00058912	-0.63048	-0.00044094	-1.4728	-0.0010301	699.3783336938013	131.42	0.80898	131.42	131.02	131.83	0					33	15	3	0	0	0	0.73647	1	50602	50602		2.7352	0	1	4606000	+		35981	21253	26351	26548	34986	34986					0.059957145908356324
MLYYYLWLRW	10	Unmodified	_MLYYYLWLRW_					0	0	0		ENST00000306621.7_1_4:76955462-76955498:-|nuORF	ENST00000306621.7_1_4:76955462-76955498:-|nuORF	ENST00000306621.7_1_4:76955462-76955498:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	503.32452392578125	3	502.924931	1505.75296	-0.29078	-0.00014624	-1.1094	-0.00055794	-1.4002	-0.00070418	502.92438959211614	97.415	0.45349	97.415	97.187	97.641	0					19	8	3	0	0	0	0.72358	1	35824	35824		1.7423	0.41263	1	1826600			35982	10580	26352	26549	34987	34987					0.020317420359333482
MMAVPALVQW	10	Unmodified	_MMAVPALVQW_					0	0	0		ENST00000367261.7_1_1:202864736-202864784:-|nuORF	ENST00000367261.7_1_1:202864736-202864784:-|nuORF	ENST00000367261.7_1_1:202864736-202864784:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	573.6956787109375	2	573.29593	1144.57731	0.054056	3.099E-05	0.11846	6.7912E-05	0.17251	9.8902E-05	573.2957985640038	45.459	0.30113	45.459	45.284	45.585	0					9	5	2	0	0	0	0.60556	1	15933	15933		20.454	1.1966	1	3033500			35983	11085	26353	26550	34988	34988					0.010802042502064069
MMDPNSTQRY	10	2 Oxidation (M)	_M(Oxidation (M))M(Oxidation (M))DPNSTQRY_		M(1)M(1)DPNSTQRY		M(170)M(170)DPNSTQRY	0	0	2		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	A375_MHC_IP_R1	1	638.1600341796875	2	637.760637	1273.50672	-0.47264	-0.00030143	-0.56999	-0.00036352	-1.0426	-0.00066495	637.7605944261145	21.02	2.539	21.02	20.485	23.024	0					128	49	4	0	0	0	3.1676E-05	5	5593	5364;5400;5593;5818;6043		165.58	141.79	1	24141000			35984	3915	26354	26551	34989;34990;34991;34992;34993	34991		201;202			-0.11909165596034654
MMDPNSTQRY	10	2 Oxidation (M)	_M(Oxidation (M))M(Oxidation (M))DPNSTQRY_		M(1)M(1)DPNSTQRY		M(53)M(53)DPNSTQRY	0	0	2		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MSMS	A375_MHC_IP_R1	1	638.1610107421875	2	637.760637	1273.50672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.071	1	23.071	22.571	23.571	0								0	0	0	0.04142	1	6272	6272		53.317	39.411	1				35985	3915	26354	26551	34994	34994		201;202			-0.11909165596034654
MMDPNSTQRY	10	2 Oxidation (M)	_M(Oxidation (M))M(Oxidation (M))DPNSTQRY_		M(1)M(1)DPNSTQRY		M(46)M(46)DPNSTQRY	0	0	2		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MSMS	A375_MHC_IP_R1	1	638.1598510742188	2	637.760637	1273.50672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.818	1	24.818	24.318	25.318	0								0	0	0	0.087728	1	7129	7129		46.022	32.116	1				35986	3915	26354	26551	34995	34995		201;202			-0.11909165596034654
MMDPNSTQRY	10	2 Oxidation (M)	_M(Oxidation (M))M(Oxidation (M))DPNSTQRY_		M(1)M(1)DPNSTQRY		M(140)M(140)DPNSTQRY	0	0	2		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	A375_MHC_IP_R2	2	638.1602172851562	2	637.760637	1273.50672	-1.1066	-0.00070576	-0.14427	-9.2012E-05	-1.2509	-0.00079777	637.7608005850855	20.914	2.9998	21.524	20.349	23.348	0.61029					141	58	4	0	0	0	0.0022803	4	6593	6369;6593;6817;7054		139.32	124.92	1	11918000			35987	3915	26354	26551	34996;34997;34998;34999	34997		201;202			-0.11909165596034654
MMDPNSTQRY	10	2 Oxidation (M)	_M(Oxidation (M))M(Oxidation (M))DPNSTQRY_		M(1)M(1)DPNSTQRY		M(61)M(61)DPNSTQRY	0	0	2		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	A375_MHC_IP_R2	2	638.1595458984375	2	637.760637	1273.50672	-1.096	-0.00069896	0.20327	0.00012964	-0.89268	-0.00056932	637.7607209151264	23.312	0.86344	23.942	23.368	24.232	0.63014					28	16	2	0	0	0	0.11281	1	7456	7456		60.899	52.154	1	3125400			35988	3915	26354	26551	35000	35000		201;202			-0.11909165596034654
MMDPNSTQRY	10	2 Oxidation (M)	_M(Oxidation (M))M(Oxidation (M))DPNSTQRY_		M(1)M(1)DPNSTQRY		M(50)M(50)DPNSTQRY	0	0	2		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	A375_MHC_IP_R2	2	638.1597900390625	2	637.760637	1273.50672	-1.033	-0.00065879	-0.41863	-0.00026698	-1.4516	-0.00092577	637.7602234722696	23.855	0.35663	24.485	24.232	24.588	0.63014					12	6	3	0	0	0	0.19516	1	7745	7745		49.742	42.64	1	2352500			35989	3915	26354	26551	35001	35001		201;202			-0.11909165596034654
MMDPNSTQRY	10	2 Oxidation (M)	_M(Oxidation (M))M(Oxidation (M))DPNSTQRY_					0	0	2		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MATCH	A375_MHC_IP_R1	1		2	637.760637	1273.50672	-0.94461	-0.00060244	0.2346	0.00014962	-0.71002	-0.00045282	637.7608970729624	23.552	0.96755	23.552	23.074	24.042	0	-0.19512	1.6088E-05	NaN	60.899	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2994400			35990	3915	26354	26551				201;202			-0.11909165596034654
MMDPNSTQRY	10	Oxidation (M)	_MM(Oxidation (M))DPNSTQRY_		M(0.029)M(0.971)DPNSTQRY		M(-15)M(15)DPNSTQRY	0	0	1		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	A375_MHC_IP_R1	1	630.1627807617188	2	629.76318	1257.51181	-0.89453	-0.00056334	-0.086552	-5.4507E-05	-0.98108	-0.00061785	629.7633674821053	23.699	0.76238	23.699	23.432	24.194	0					42	14	4	0	0	0	3.2662E-05	2	6571	6571;6619		177.58	151.31	2	30264000			35991	3915	26354	26552	35002;35003	35002		201;202			-0.10664861733448561
MMDPNSTQRY	10	Oxidation (M)	_M(Oxidation (M))MDPNSTQRY_		M(0.932)M(0.068)DPNSTQRY		M(11)M(-11)DPNSTQRY	0	0	1		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	A375_MHC_IP_R1	1	630.1629028320312	2	629.76318	1257.51181	-0.72563	-0.00045698	-0.14346	-9.0343E-05	-0.86909	-0.00054732	629.7632840398727	24.673	0.91035	24.673	24.143	25.053	0					48	17	4	0	0	0	2.711E-05	2	6907	6907;7185		158.08	135.34	2	35462000			35992	3915	26354	26552	35004;35005	35004		201;202			-0.10664861733448561
MMDPNSTQRY	10	Oxidation (M)	_MM(Oxidation (M))DPNSTQRY_		M(0.025)M(0.975)DPNSTQRY		M(-16)M(16)DPNSTQRY	0	0	1		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-SECPEP	A375_MHC_IP_R1	1	630.1626586914062	2	629.76318	1257.51181	-0.6455	-0.00040651	-0.70506	-0.00044402	-1.3506	-0.00085053	629.7630738610413	23.196	0.45716	23.196	22.974	23.432	0					27	8	5	0	0	0	0.0001004	1	6311	6311		210.93	170.98	2	55716000			35993	3915	26354	26552	35006	35006		201;202			-0.10664861733448561
MMDPNSTQRY	10	Oxidation (M)	_MM(Oxidation (M))DPNSTQRY_		M(0.031)M(0.969)DPNSTQRY		M(-15)M(15)DPNSTQRY	0	0	1		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	A375_MHC_IP_R2	2	630.16259765625	2	629.76318	1257.51181	-1.146	-0.00072173	0.081764	5.1492E-05	-1.0643	-0.00067023	629.7635357145753	20.904	0.6084	21.515	21.16	21.768	0.61029					36	11	4	0	0	0	3.1676E-05	1	6485	6485		165.58	139.32	2	34291000			35994	3915	26354	26552	35007	35007		201;202			-0.10664861733448561
MMDPNSTQRY	10	Oxidation (M)	_M(Oxidation (M))MDPNSTQRY_		M(0.992)M(0.008)DPNSTQRY		M(21)M(-21)DPNSTQRY	0	0	1		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	A375_MHC_IP_R2	2	630.16259765625	2	629.76318	1257.51181	-1.1063	-0.00069674	-0.21688	-0.00013658	-1.3232	-0.00083332	629.7633090436603	23.327	0.96526	23.958	23.675	24.64	0.63014					52	18	4	0	0	0	0.0022429	2	7730	7420;7730		139.38	114.39	2	25378000			35995	3915	26354	26552	35008;35009	35009		201;202			-0.10664861733448561
MMDPNSTQRY	10	Oxidation (M)	_M(Oxidation (M))MDPNSTQRY_		M(0.959)M(0.041)DPNSTQRY		M(14)M(-14)DPNSTQRY	0	0	1		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	A375_MHC_IP_R2	2	630.1627197265625	2	629.76318	1257.51181	-1.1126	-0.00070066	-0.092549	-5.8284E-05	-1.2051	-0.00075894	629.7632939196138	24.273	0.86241	24.917	24.653	25.516	0.64368					43	16	4	0	0	0	0.011507	1	8006	8006		118.21	92.81	2	34090000			35996	3915	26354	26552	35010	35010		201;202			-0.10664861733448561
MMDPNSTQRY	10	Unmodified	_MMDPNSTQRY_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	A375_MHC_IP_R1	1	622.1650390625	2	621.765723	1241.51689	-0.78157	-0.00048595	0.30085	0.00018706	-0.48072	-0.00029889	621.7657747559161	30.458	0.55343	30.458	30.15	30.703	0					18	10	2	0	0	0	0.091534	1	9640	9640		65.474	56.091	1	4845700			35997	3915	26354	26553	35011	35011					-0.09420557870816992
MMDPNSTQRY	10	Unmodified	_MMDPNSTQRY_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	A375_MHC_IP_R2	2	622.1651611328125	2	621.765723	1241.51689	-1.1867	-0.00073784	-0.22135	-0.00013763	-1.408	-0.00087546	621.7658972226586	29.864	0.65541	30.563	30.185	30.84	0.69872					32	12	4	0	0	0	0.011657	1	10402	10402		114.5	89.097	1	13155000			35998	3915	26354	26553	35012	35012					-0.09420557870816992
MMFCDMCD	8	Unmodified	_MMFCDMCD_					0	0	0		nc|ENSG00000130024|Q8WUB8-3|PHF10;nc|ENSG00000130024|Q8WUB8-2|PHF10;ENSG00000130024|ENST00000339209|PHF10	nc|ENSG00000130024|Q8WUB8-3|PHF10	nc|ENSG00000130024|Q8WUB8-3|PHF10	MULTI-SECPEP	A375_MHC_IP_R2	2	995.643310546875	1	995.279964	994.272687	0.024382	2.4267E-05	-1.6486	-0.0016408	-1.6242	-0.0016165	995.276914947275	123.97	0.30504	124.3	124.19	124.5	0.32969					6	5	2	0	0	0	0.972	1	47768	47768		0.79363	0.79363	1	20564000			35999	4219	26355	26554	35013	35013					-0.22467799552271117
MMFRDNFY	8	Unmodified	_MMFRDNFY_					0	0	0			REV__tr|U7SPB8|U7SPB8_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01806PE=3SV=1	REV__tr|U7SPB8|U7SPB8_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01806PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	562.1821899414062	2	562.238612	1122.46267	-0.51775	-0.0002911	-0.37813	-0.0002126	-0.89588	-0.0005037	562.2384090906273	47.22	0.56481	47.22	46.952	47.517	0					18	10	3	0	0	0	0.7758	1	16549	16549		10.183	4.4515	1	2627400	+		36000	28355	26356	26555	35014	35014					-0.09366105231720212
MMIGLFLKKL	10	Unmodified	_MMIGLFLKKL_					0	0	0			REV__tr|U7T532|U7T532_FUSNUThioredoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00415PE=4SV=1	REV__tr|U7T532|U7T532_FUSNUThioredoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00415PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	398.97607421875	3	398.576474	1192.70759	-0.30518	-0.00012164	-0.40246	-0.00016041	-0.70764	-0.00028205	398.5762953289574	46.695	0.70771	46.695	46.295	47.003	0					34	13	3	0	0	0	0.66857	1	16398	16398		15.739	10.336	1	6465300	+		36001	28815	26357	26556	35015	35015					0.11894800249206128
MMIGLFLKKL	10	Unmodified	_MMIGLFLKKL_					0	0	0			REV__tr|U7T532|U7T532_FUSNUThioredoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00415PE=4SV=1	REV__tr|U7T532|U7T532_FUSNUThioredoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00415PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	398.9760437011719	3	398.576474	1192.70759	-0.08019	-3.1962E-05	-0.62583	-0.00024944	-0.70602	-0.0002814	398.5762177069898	45.697	0.55483	46.463	46.099	46.654	0.76518					27	10	3	0	0	0	0.7154	1	17035	17035		5.4027	2.3304	1	5057200	+		36002	28815	26357	26556	35016	35016					0.11894800249206128
MMIGLFLKKL	10	Unmodified	_MMIGLFLKKL_					0	0	0			REV__tr|U7T532|U7T532_FUSNUThioredoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00415PE=4SV=1	REV__tr|U7T532|U7T532_FUSNUThioredoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00415PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	398.576474	1192.70759	-0.30518	-0.00012164	-0.40246	-0.00016041	-0.70764	-0.00028205	398.5762953289574	46.695	0.70771	46.695	46.295	47.003	0	0.11613	0.00014731	NaN	15.739	34	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6465300	+		36003	28815	26357	26556							0.11894800249206128
MMIGLFLKKL	10	Unmodified	_MMIGLFLKKL_					0	0	0			REV__tr|U7T532|U7T532_FUSNUThioredoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00415PE=4SV=1	REV__tr|U7T532|U7T532_FUSNUThioredoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00415PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	398.576474	1192.70759	-0.08019	-3.1962E-05	-0.62583	-0.00024944	-0.70602	-0.0002814	398.5762177069898	45.697	0.55483	46.463	46.099	46.654	0.76518	-0.11613	-0.00011978	NaN	15.739	27	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5057200	+		36004	28815	26357	26556							0.11894800249206128
MMKRFHREQYL	11	Unmodified	_MMKRFHREQYL_					0	0	0		ENST00000511141.1_1_4:153717542-153717788:-|nuORF	ENST00000511141.1_1_4:153717542-153717788:-|nuORF	ENST00000511141.1_1_4:153717542-153717788:-|nuORF	MSMS	A375_MHC_IP_R1	1	513.67529296875	3	513.595479	1537.76461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.21	1	109.21	108.71	109.71	0								0	0	0	0.16331	1	40059	40059		0.50596	0	1				36005	12905	26358	26557	35017	35017					0.017236157876595826
MMLDDLLQL	9	Unmodified	_MMLDDLLQL_					0	0	0		nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6769409179688	2	546.277403	1090.54025	-0.81045	-0.00044273	-0.12085	-6.6015E-05	-0.93129	-0.00050874	546.2773376954511	134.78	0.2038	134.78	134.67	134.88	0					6	3	2	0	0	0	0.58271	1	51995	51995		20.454	10.38	1	2761800			36006	4699	26359	26558	35018	35018					-0.0013951208618436794
MMLDIRNEV	9	Unmodified	_MMLDIRNEV_					0	0	0		ENSG00000153294|ENST00000283303|ADGRF4	ENSG00000153294|ENST00000283303|ADGRF4	ENSG00000153294|ENST00000283303|ADGRF4	MULTI-MSMS	A375_MHC_IP_R1	1	561.202880859375	2	560.778102	1119.54165	-0.87635	-0.00049144	-0.3525	-0.00019768	-1.2288	-0.00068911	560.7783626847245	68.087	1.0124	68.087	67.654	68.666	0					65	19	5	0	0	0	0.46038	1	24795	24795		21.747	3.6003	1	27382000			36007	6025	26360	26559	35019	35019					-0.01333877997444688
MMLSIHLLS	9	Unmodified	_MMLSIHLLS_					0	0	0			REV__ENSG00000188000|ENST00000641288|OR7D2	REV__ENSG00000188000|ENST00000641288|OR7D2	MSMS	A375_MHC_IP_R1	1	522.7208251953125	2	522.782656	1043.55076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.923	1	96.923	96.423	97.423	0								0	0	0	0.1535	1	35615	35615		15.847	1.9411	1		+		36008	22063	26361	26560	35020	35020					0.030725153589173715
MMNSASGPLPD	11	Unmodified	_MMNSASGPLPD_					0	0	0		nc|ENSG00000137693|P46937-4|YAP1;nc|ENSG00000137693|P46937-2|YAP1;nc|ENSG00000137693|P46937-8|YAP1;ENSG00000137693|ENST00000282441|YAP1;nc|ENSG00000137693|P46937-9|YAP1;ENST00000526594.1_1_11:102033229-102056975:+|nuORF	nc|ENSG00000137693|P46937-4|YAP1;ENST00000526594.1_1_11:102033229-102056975:+|nuORF	nc|ENSG00000137693|P46937-4|YAP1	MULTI-MSMS	A375_MHC_IP_R2	2	560.2118530273438	2	560.244092	1118.47363	-0.64326	-0.00036038	-0.88098	-0.00049356	-1.5242	-0.00085394	560.2434639771626	27.68	0.55676	28.358	28.149	28.706	0.67857					22	10	3	0	0	0	0.73078	1	9510	9510		8.1555	8.1555	1	4521200			36009	4904;13085	26362	26561	35021	35021					-0.08086747648076198
MMRETFIY	8	Unmodified	_MMRETFIY_					0	0	0			REV__ST6GALNAC4|p.T183I|1|0.9|ENSG00000136840|chr9:127912331-127912331|G/A|missense_variant	REV__ST6GALNAC4|p.T183I|1|0.9|ENSG00000136840|chr9:127912331-127912331|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	546.1798706054688	2	545.756638	1089.49872	-0.41801	-0.00022813	-0.71703	-0.00039132	-1.135	-0.00061945	545.7565625876919	56.431	0.5575	56.431	56.041	56.599	0					17	10	2	0	0	0	0.74466	1	20254	20254		21.747	0	1	1341900	+		36010	28052	26363	26562	35022	35022					-0.04244648054850586
MMRRKTKRKME	11	Unmodified	_MMRRKTKRKME_					0	0	0		ENST00000553612.5_1_14:81651936-81658969:-|nuORF	ENST00000553612.5_1_14:81651936-81658969:-|nuORF	ENST00000553612.5_1_14:81651936-81658969:-|nuORF	MSMS	A375_MHC_IP_R2	2	747.9158935546875	2	747.912533	1493.81051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.814	1	92.549	92.049	93.049	0.7345								0	0	0	0.16297	1	34920	34920		3.2813	0.28607	1				36011	13404	26364	26563	35023	35023					0.08335937698211637
MMTRKLFAK	9	Unmodified	_MMTRKLFAK_					0	0	0			REV__tr|U7T2Z3|U7T2Z3_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00513PE=4SV=1	REV__tr|U7T2Z3|U7T2Z3_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00513PE=4SV=1	MSMS	A375_MHC_IP_R1	1	563.7378540039062	2	563.317197	1124.61984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.9	1	139.9	139.4	140.4	0								0	0	0	0.15486	1	53754	53754		4.3292	0	1		+		36012	28761	26365	26564	35024	35024					0.06251599378447281
MNEELKREA	9	Unmodified	_MNEELKREA_					0	0	0		ENSG00000158445|ENST00000371741|KCNB1;KCNB1|p.T154I|1|0.12|ENSG00000158445|chr20:49482020-49482020|G/A|missense_variant	ENSG00000158445|ENST00000371741|KCNB1	ENSG00000158445|ENST00000371741|KCNB1	MULTI-SECPEP	A375_MHC_IP_R1	1	559.810302734375	2	560.27678	1118.53901	-0.45069	-0.00025251	1.17	0.0006555	0.71926	0.00040299	560.7789134491713	83.149	0.15154	83.149	83.075	83.226	0					4	2	2	0	0	0	0.46045	1	30432	30432		36.127	3.8215	1	1548900			36013	6306	26366	26565	35025	35025					-0.015520101307174627
MNERYKRRHDA	11	Unmodified	_MNERYKRRHDA_					0	0	0			REV__ENSG00000173572|ENST00000342929|NLRP13	REV__ENSG00000173572|ENST00000342929|NLRP13	MSMS	A375_MHC_IP_R1	1	492.47747802734375	3	492.580998	1474.72116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.271	1	49.271	48.771	49.771	0								0	0	0	0.16316	1	17420	17420		2.2527	1.6259	1		+		36014	21233	26367	26566	35026	35026					0.002791423347161981
MNFIQFWFDFY	11	Unmodified	_MNFIQFWFDFY_					0	0	0			REV__ENSG00000109181|ENST00000265403|UGT2B10	REV__ENSG00000109181|ENST00000265403|UGT2B10	MULTI-MSMS	A375_MHC_IP_R1	1	779.7459106445312	2	779.347206	1556.67986	-0.48568	-0.00037852	-0.72794	-0.00056732	-1.2136	-0.00094583	779.3465964431861	79.878	0.4608	79.878	79.625	80.086	0					19	8	3	0	0	0	0.7039	1	29153	29153		15.248	7.6395	1	2332900	+		36015	17573	26368	26567	35027	35027					-0.0762143147730967
MNFIQFWFDFY	11	Unmodified	_MNFIQFWFDFY_					0	0	0			REV__ENSG00000109181|ENST00000265403|UGT2B10	REV__ENSG00000109181|ENST00000265403|UGT2B10	MULTI-MSMS	A375_MHC_IP_R2	2	779.745849609375	2	779.347206	1556.67986	-0.8582	-0.00066884	-1.0597	-0.00082588	-1.9179	-0.0014947	779.3459527492679	79.349	0.45328	80.094	79.796	80.249	0.74474					17	8	3	0	0	0	0.7039	1	30101	30101		15.248	9.5166	1	2965100	+		36016	17573	26368	26567	35028	35028					-0.0762143147730967
MNFIQFWFDFY	11	Unmodified	_MNFIQFWFDFY_					0	0	0			REV__ENSG00000109181|ENST00000265403|UGT2B10	REV__ENSG00000109181|ENST00000265403|UGT2B10	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	779.347206	1556.67986	-0.48568	-0.00037852	-0.72794	-0.00056732	-1.2136	-0.00094583	779.3465964431861	79.878	0.4608	79.878	79.625	80.086	0	-0.10766	0.00010502	NaN	15.248	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2332900	+		36017	17573	26368	26567							-0.0762143147730967
MNFIQFWFDFY	11	Unmodified	_MNFIQFWFDFY_					0	0	0			REV__ENSG00000109181|ENST00000265403|UGT2B10	REV__ENSG00000109181|ENST00000265403|UGT2B10	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	779.347206	1556.67986	-0.8582	-0.00066884	-1.0597	-0.00082588	-1.9179	-0.0014947	779.3459527492679	79.349	0.45328	80.094	79.796	80.249	0.74474	0.10766	-0.0004121	NaN	15.248	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2965100	+		36018	17573	26368	26567							-0.0762143147730967
MNGTREAIDL	10	Unmodified	_MNGTREAIDL_					0	0	0			REV__nc|ENSG00000111199|Q9HBA0-6|TRPV4	REV__nc|ENSG00000111199|Q9HBA0-6|TRPV4	MSMS	A375_MHC_IP_R1	1	560.277587890625	2	560.27678	1118.53901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.97	1	125.97	125.47	126.47	0								0	0	0	0.14862	1	48049	48049		20.454	3.5113	1		+		36019	17652	26369	26568	35029	35029					-0.015520101307402001
MNLKNSGLY	9	Unmodified	_MNLKNSGLY_					0	0	0		ENST00000486860.5_1_7:87839387-87846454:-|nuORF	ENST00000486860.5_1_7:87839387-87846454:-|nuORF	ENST00000486860.5_1_7:87839387-87846454:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	520.1644287109375	2	520.265684	1038.51682	-0.35722	-0.00018585	0.10089	5.2489E-05	-0.25633	-0.00013336	520.2659434698768	47.77	0.55365	47.77	47.467	48.02	0					25	10	3	0	0	0	0.75466	1	16799	16799		7.9102	0	1	2914100			36020	12588	26370	26569	35030	35030					-0.0009018980849759828
MNLLMPWRFYE	11	Unmodified	_MNLLMPWRFYE_					0	0	0			REV__ENSG00000137040|ENST00000259569|RANBP6	REV__ENSG00000137040|ENST00000259569|RANBP6	MSMS	A375_MHC_IP_R1	1	500.4748840332031	3	500.577314	1498.71011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.778	1	71.778	71.278	72.278	0								0	0	0	0.16307	1	26093	26093		1.1098	0.096179	1		+		36021	18981	26371	26570	35031	35031					-0.01929396083755819
MNLRESSA	8	Unmodified	_MNLRESSA_					0	0	0			REV__nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	REV__nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	MSMS	A375_MHC_IP_R1	1	454.1684265136719	2	454.218734	906.422915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.574	1	94.574	94.074	95.074	0								0	0	0	0.16876	1	34763	34763		16.942	3.0362	1		+		36022	22487	26372	26571	35032	35032					-0.03403908910786413
MNSQQTISDR	10	Unmodified	_MNSQQTISDR_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MSMS	A375_MHC_IP_R2	2	590.6743774414062	2	590.274769	1178.53499	-0.71153	-0.00042	0.82882	0.00048923	0.11729	6.9232E-05	590.2750171061306	51.217	0.50611	51.969	51.713	52.219	0.75225					15	9	2	0	0	0	0.42311	1	19284	19284		32.786	7.7947	1	2364800			36023	3341	26373	26572	35033	35033					-0.04714099624447954
MNTTFMLNFF	10	Unmodified	_MNTTFMLNFF_					0	0	0			REV__nc|ENSG00000122550|Q8IXQ5-5|KLHL7	REV__nc|ENSG00000122550|Q8IXQ5-5|KLHL7	MULTI-SECPEP	A375_MHC_IP_R2	2	633.6875610351562	2	633.288302	1264.56205	-0.69609	-0.00044082	-0.10259	-6.4971E-05	-0.79868	-0.00050579	633.2874808137461	90.861	1.0116	91.595	91.211	92.222	0.73451					35	19	3	0	0	0	0.6774	1	34539	34539		34.402	11.665	1	2757500	+		36024	18214	26374	26573	35034	35034					-0.05964707337625441
MNVAEVDKV	9	Unmodified	_MNVAEVDKV_					0	0	0		ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	MULTI-SECPEP	A375_MHC_IP_R1	1	503.15765380859375	2	502.757692	1003.50083	-0.41059	-0.00020643	-0.56844	-0.00028579	-0.97902	-0.00049221	502.7578813121829	40.196	0.71398	40.196	39.845	40.559	0					18	13	2	0	0	0	0.37663	1	13795	13795		43.772	3.8227	1	3692900			36025	7651	26375	26574	35035	35035					-0.0007789604541130757
MNVPKLIED	9	Unmodified	_MNVPKLIED_					0	0	0		tr|U7SLA3|U7SLA3_FUSNUdihydrofolatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02029PE=3SV=1	tr|U7SLA3|U7SLA3_FUSNUdihydrofolatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02029PE=3SV=1	tr|U7SLA3|U7SLA3_FUSNUdihydrofolatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02029PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	530.1624755859375	2	529.781167	1057.54778	-0.54086	-0.00028654	-3.1403	-0.0016637	-3.6812	-0.0019502	530.2807204918308	125.83	0.35455	126.13	125.87	126.23	0.2951					9	6	2	0	0	0	0.64971	1	49074	49074		11.495	0.67078	1	7771200			36026	29499	26376	26575	35036	35036					0.021309635057377818
MNVSLKVK	8	Unmodified	_MNVSLKVK_					0	0	0			REV__ENST00000506566.1_1_4:130824308-130824734:+|nuORF	REV__ENST00000506566.1_1_4:130824308-130824734:+|nuORF	MSMS	A375_MHC_IP_R1	1	459.87420654296875	2	459.775688	917.536823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.108	1	66.108	65.608	66.608	0								0	0	0	0.16876	1	23934	23934		7.9102	0	1		+		36027	25555	26377	26576	35037	35037					0.07475605922127215
MNYWNFLLWNV	11	Unmodified	_MNYWNFLLWNV_					0	0	0			REV__ENSG00000171316|ENST00000423902|CHD7	REV__ENSG00000171316|ENST00000423902|CHD7	MSMS	A375_MHC_IP_R2	2	500.5018310546875	3	500.57619	1498.70674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.85	1	76.59	76.09	77.09	0.74052								0	0	0	0.16334	1	28793	28793		0.45452	0	1		+		36028	21060	26378	26577	35038	35038					-0.022663228661258472
MPGMMSSV	8	Unmodified	_MPGMMSSV_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;ENST00000489741.1_1_2:153551046-153571111:-|nuORF;ENST00000450303.6_1_2:153551046-153573920:-|nuORF;nc|ENSG00000196504|O75400-5|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MSMS	A375_MHC_IP_R2	2	420.12408447265625	2	420.176635	838.338717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.26	1	102.02	101.52	102.52	0.76428								0	0	0	0.16876	1	38382	38382		5.2307	0	1				36029	9050	26379	26578	35039	35039					-0.08691899323548569
MPLELNPNVQ	10	Unmodified	_MPLELNPNVQ_					0	0	0			REV__ENST00000450801.1_1_X:138811061-138819898:-|nuORF	REV__ENST00000450801.1_1_X:138811061-138819898:-|nuORF	MSMS	A375_MHC_IP_R1	1	385.57366943359375	3	385.533991	1153.58014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.721	1	51.721	51.221	52.221	0								0	0	0	0.15531	1	18367	18367		1.7423	0.28716	1		+		36030	24887	26380	26579	35040	35040					0.00949750908716851
MPLGARTAS	9	Unmodified	_MPLGARTAS_					0	0	0		ENST00000529437.1_1_10:102286710-102289623:-|nuORF;ENST00000466088.5_1_10:102286131-102289614:-|nuORF;nc|ENSG00000255339|O95169-2|NDUFB8;ENSG00000166136|ENST00000299166|NDUFB8	ENST00000529437.1_1_10:102286710-102289623:-|nuORF	ENST00000529437.1_1_10:102286710-102289623:-|nuORF	MSMS	A375_MHC_IP_R2	2	452.1875915527344	2	452.23947	902.464386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.27	1	143.29	142.79	143.79	0.024414								0	0	0	0.15486	1	55994	55994		4.3292	0.38484	1				36031	7026	26381	26580	35041	35041					0.009252718485299738
MPLIPKVDKP	10	Unmodified	_MPLIPKVDKP_					0	0	0			REV__nc|ENSG00000142611|Q9HAZ2-4|PRDM16	REV__nc|ENSG00000142611|Q9HAZ2-4|PRDM16	MULTI-MSMS	A375_MHC_IP_R2	2	379.96044921875	3	379.89486	1136.66275	-0.27007	-0.0001026	0.66883	0.00025408	0.39876	0.00015149	379.8950971731952	23.324	0.20245	23.954	23.777	23.979	0.63014					6	3	2	0	0	0	0.70015	1	7492	7492		12.228	2.077	1	3957100	+		36032	19315	26382	26581	35042	35042					0.09988692707543123
MPQKKRFLMLF	11	Unmodified	_MPQKKRFLMLF_					0	0	0		ENST00000454079.5_1_3:50009564-50012795:+|nuORF	ENST00000454079.5_1_3:50009564-50012795:+|nuORF	ENST00000454079.5_1_3:50009564-50012795:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	479.67120361328125	3	480.273566	1437.79887	-0.54482	-0.00026166	0.55432	0.00026623	0.0094989	4.5621E-06	480.60827272936467	131.3	0.81377	131.49	131.19	132	0.18954					18	15	2	0	0	0	1.0004	1	51585	51585		1.2148	0	1	1383700			36033	12107	26383	26582	35043	35043					0.09748063946540242
MQDKYHNW	8	Unmodified	_MQDKYHNW_					0	0	0			REV__ENSG00000131477|ENST00000253796|RAMP2	REV__ENSG00000131477|ENST00000253796|RAMP2	MSMS	A375_MHC_IP_R2	2	374.4333190917969	3	374.499281	1120.47601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.851	1	41.625	41.125	42.125	0.77451								0	0	0	0.16876	1	15140	15140		1.3295	0.36726	1		+		36034	18608	26384	26583	35044	35044					-0.07940531128133443
MQFGGSDTLL	10	Unmodified	_MQFGGSDTLL_					0	0	0			REV__ENSG00000213339|ENST00000250237|QTRT1	REV__ENSG00000213339|ENST00000250237|QTRT1	MSMS	A375_MHC_IP_R1	1	534.65380859375	2	534.755149	1067.49575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.785	1	41.785	41.285	42.285	0								0	0	0	0.15207	1	14447	14447		13.906	3.0821	1		+		36035	22619	26385	26584	35045	35045					-0.03530199908027498
MQFSKPRKL	9	Unmodified	_MQFSKPRKL_					0	0	0		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1;ENST00000600689.1_1_19:18974163-18976510:+|nuORF	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MULTI-MSMS	A375_MHC_IP_R1	1	379.2865905761719	3	378.886588	1133.63793	0.14317	5.4247E-05	-0.18362	-6.9572E-05	-0.040447	-1.5325E-05	378.8864910543529	24.22	0.96293	24.22	23.94	24.903	0					26	18	2	0	0	0	0.50355	1	6826	6826		19.626	8.8264	1	25708000			36036	878	26386	26585	35046	35046					0.07646057624833702
MQFSKPRKL	9	Unmodified	_MQFSKPRKL_					0	0	0		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1;ENST00000600689.1_1_19:18974163-18976510:+|nuORF	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	378.886588	1133.63793	-0.15607	-5.9134E-05	-0.98309	-0.00037248	-1.1392	-0.00043161	378.8863927265513	23.881	0.40866	24.511	24.333	24.742	0.63014	0.14565	-0.00078326	NaN	19.626	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5097700			36037	878	26386	26585							0.07646057624833702
MQFYKTAKDWW	11	Unmodified	_MQFYKTAKDWW_					0	0	0		nc|ENSG00000136160|P24530-2|EDNRB;ENSG00000136160|ENST00000646607|EDNRB;chr13:77918624-77975347|131|46.99|0.06|9.71|-|ENST00000646948|EDNRB,EDNRB;nc|ENSG00000136160|P24530-3|EDNRB	nc|ENSG00000136160|P24530-2|EDNRB	nc|ENSG00000136160|P24530-2|EDNRB	MSMS	A375_MHC_IP_R2	2	502.189208984375	3	501.907829	1502.70166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.885	1	71.619	71.119	72.119	0.73421								0	0	0	0.16302	1	26880	26880		1.2148	0	1				36038	424	26387	26586	35047	35047					-0.029586267287413648
MQIFVKTLTGK	11	Unmodified	_MQIFVKTLTGK_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000143947|ENST00000272317|RPS27A;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000598814.1_1_19:18682694-18684218:+|nuORF;ENST00000471772.6_1_2:55459960-55460558:+|nuORF;ENST00000463185.1_1_2:55459960-55460026:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MSMS	A375_MHC_IP_R2	2	422.6394958496094	3	422.581053	1264.72133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.319	1	61.064	60.564	61.564	0.74503								0	0	0	0.15801	1	22835	22835		15.478	9.2441	1				36039	9678	26388	26587	35048	35048					0.09955749281994031
MQISSISPEKY	11	Unmodified	_MQISSISPEKY_					0	0	0			REV__ENSG00000179152|ENST00000342649|TCAIM	REV__ENSG00000179152|ENST00000342649|TCAIM	MULTI-MSMS	A375_MHC_IP_R2	2	428.5643005371094	3	428.216439	1281.62749	-0.49499	-0.00021196	-0.16415	-7.0292E-05	-0.65914	-0.00028225	428.21643830809967	19.713	0.91126	20.323	19.841	20.752	0.61029					41	17	3	0	0	0	0.73658	1	6087	6087		2.6312	0	1	12314000	+		36040	21545	26389	26588	35049	35049					-0.002060146109215566
MQISSKRAVP	10	Unmodified	_MQISSKRAVP_					0	0	0		ENST00000456210.5_1_3:50311877-50313205:+|nuORF	ENST00000456210.5_1_3:50311877-50313205:+|nuORF	ENST00000456210.5_1_3:50311877-50313205:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	372.9291076660156	3	372.877981	1115.61211	0.41219	0.0001537	-0.43377	-0.00016174	-0.021586	-8.0489E-06	372.8778605360219	30.597	0.65726	31.315	30.809	31.467	0.71857					22	12	3	0	0	0	0.72112	1	10557	10557		2.8433	2.8433	1	8009200			36041	12126	26390	26589	35050	35050					0.05893163382552302
MQKINLWDA	9	Unmodified	_MQKINLWDA_					0	0	0			REV__ENSG00000112249|ENST00000369162|ASCC3	REV__ENSG00000112249|ENST00000369162|ASCC3	MULTI-SECPEP	A375_MHC_IP_R2	2	373.2683410644531	3	373.526948	1117.55902	-0.073636	-2.7505E-05	-0.58881	-0.00021993	-0.66244	-0.00024744	373.5266017254302	33.52	0.30419	34.272	34.146	34.45	0.75225					9	5	2	0	0	0	0.78753	1	12062	12062		8.1555	3.966	1	1230500	+		36042	17721	26391	26590	35051	35051					0.0049378559986053006
MQLKPMEINP	10	Unmodified	_MQLKPMEINP_					0	0	0		ENST00000472501.5_1_4:41258993-41259135:+|nuORF;ENST00000504818.5_1_4:41258993-41262665:+|nuORF;ENSG00000154277|ENST00000284440|UCHL1	ENST00000472501.5_1_4:41258993-41259135:+|nuORF	ENST00000472501.5_1_4:41258993-41259135:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	401.3028869628906	3	400.87536	1199.60425	-0.40501	-0.00016236	4.253	0.0017049	3.848	0.0015426	400.87723456839694	28.221	0.50337	28.221	27.937	28.44	0					17	9	2	0	0	0	0.93041	1	8564	8564		2.8433	0	1	1846000			36043	6079	26392	26591	35052	35052					0.012432680707661348
MQNEQSELR	9	Unmodified	_MQNEQSELR_					0	0	0			REV__ENST00000490506.5_1_14:23421645-23426291:-|nuORF	REV__ENST00000490506.5_1_14:23421645-23426291:-|nuORF	MSMS	A375_MHC_IP_R2	2	567.6842041015625	2	567.764037	1133.51352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.931	1	33.668	33.168	34.168	0.73692								0	0	0	0.15069	1	11760	11760		20.454	3.3407	1		+		36044	25386	26393	26592	35053	35053					-0.04789484653178988
MQPICNWDP	9	Unmodified	_MQPICNWDP_					0	0	0			REV__ENSG00000169933|ENST00000675598|FRMPD4	REV__ENSG00000169933|ENST00000675598|FRMPD4	MULTI-MSMS	A375_MHC_IP_R2	2	552.673095703125	2	552.23607	1102.45759	-1.1775	-0.00065025	-0.3837	-0.00021189	-1.5612	-0.00086215	552.23581072115	37.426	0.6124	38.197	37.867	38.479	0.7709					28	11	4	0	0	0	0.6656	1	13598	13598		10.074	0.72649	1	7960900	+		36045	20954	26394	26593	35054	35054					-0.08954409094349103
MQPKYDEVM	9	Unmodified	_MQPKYDEVM_					0	0	0			REV__tr|U7SH87|U7SH87_FUSNUPenicillin-bindingprotein1AOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02222PE=4SV=1	REV__tr|U7SH87|U7SH87_FUSNUPenicillin-bindingprotein1AOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02222PE=4SV=1	MSMS	A375_MHC_IP_R2	2	570.68994140625	2	570.756835	1139.49912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.711	1	100.47	99.973	100.97	0.76278								0	0	0	0.13673	1	37821	37821		30.637	2.1497	1		+		36046	28201	26395	26594	35055	35055					-0.06505273125685562
MQRQEDDPRKI	11	Unmodified	_MQRQEDDPRKI_					0	0	0			REV__nc|ENSG00000134444|Q9P260|RELCH	REV__nc|ENSG00000134444|Q9P260|RELCH	MSMS	A375_MHC_IP_R1	1	472.6695251464844	3	472.573509	1414.6987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.979	1	20.979	20.479	21.479	0								0	0	0	0.16191	1	5455	5455		4.4062	0	1		+		36047	18780	26396	26595	35056	35056					0.007934981464359225
MREQEKMWEQV	11	Unmodified	_MREQEKMWEQV_					0	0	0		nc|ENSG00000174450|Q8N9W4-1|GOLGA6L2;ENSG00000174450|ENST00000567107|GOLGA6L2	nc|ENSG00000174450|Q8N9W4-1|GOLGA6L2	nc|ENSG00000174450|Q8N9W4-1|GOLGA6L2	MSMS	A375_MHC_IP_R1	1	498.4674987792969	3	498.567366	1492.68027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.168	1	76.168	75.668	76.668	0								0	0	0	0.16297	1	27761	27761		1.3296	0	1				36048	7882	26397	26596	35057	35057					-0.046363798197489814
MREVARTKL	9	Unmodified	_MREVARTKL_					0	0	0			REV__ENST00000559713.1_1_15:78506166-78526843:-|nuORF	REV__ENST00000559713.1_1_15:78506166-78526843:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	552.7235107421875	2	552.321325	1102.6281	-0.66914	-0.00036958	2.4847	0.0013724	1.8156	0.0010028	552.8228328976597	129.12	1.2708	129.12	128.84	130.11	0					45	24	4	0	0	0	0.69884	1	49648	49648		6.7232	1.4263	1	22727000	+		36049	26159	26398	26597	35058	35058					0.08088869619450634
MREYKLVVLG	10	Unmodified	_MREYKLVVLG_					0	0	0		nc|ENSG00000127314|P61224-2|RAP1B;nc|ENSG00000127314|P61224-4|RAP1B;ENST00000494982.1_1_1:112233982-112249293:+|nuORF;nc|ENSG00000127314|P61224-3|RAP1B;nc|ENSG00000254893|A6NIZ1|RAP1BL;ENSG00000127314|ENST00000250559|RAP1B;ENSG00000116473|ENST00000369709|RAP1A;ENST00000535492.5_2_12:69042504-69047907:+|nuORF;ENST00000501412.2_1_12:69042504-69042582:+|nuORF;ENST00000460800.5_1_12:69042504-69044290:+|nuORF	nc|ENSG00000127314|P61224-2|RAP1B	nc|ENSG00000127314|P61224-2|RAP1B	MULTI-MSMS	A375_MHC_IP_R1	1	403.63372802734375	3	403.233765	1206.67946	-0.31365	-0.00012647	0.4894	0.00019734	0.17575	7.0869E-05	403.23373939797335	62.317	0.76803	62.317	61.943	62.711	0					27	14	3	0	0	0	0.70792	1	22537	22537		8.7518	2.1283	1	2875200			36050	3398	26399	26598	35059	35059					0.08439193593494565
MRFLRRQELRE	11	Unmodified	_MRFLRRQELRE_					0	0	0		ENSG00000072786|ENST00000176763|STK10	ENSG00000072786|ENST00000176763|STK10	ENSG00000072786|ENST00000176763|STK10	MSMS	A375_MHC_IP_R1	1	767.4232177734375	2	767.425176	1532.8358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.002	1	94.002	93.502	94.502	0								0	0	0	0.16337	1	34551	34551		1.1933	0	1				36051	1547	26400	26599	35060	35060					0.09069451816662877
MRFSPDVAL	9	Unmodified	_MRFSPDVAL_					0	0	0		ENSG00000162512|ENST00000339394|SDC3	ENSG00000162512|ENST00000339394|SDC3	ENSG00000162512|ENST00000339394|SDC3	MULTI-SECPEP	A375_MHC_IP_R1	1	518.66796875	2	518.268227	1034.5219	-0.55253	-0.00028636	0.076754	3.9779E-05	-0.47578	-0.00024658	518.2683166929459	64.437	1.168	64.437	63.786	64.954	0					36	22	2	0	0	0	0.75842	1	23442	23442		8.7454	1.4562	1	1110000			36052	6541	26401	26600	35061	35061					0.006021140541179193
MRGRRWGALW	10	Unmodified	_MRGRRWGALW_					0	0	0			REV__ENSG00000266714|ENST00000645453|MYO15B	REV__ENSG00000266714|ENST00000645453|MYO15B	MULTI-SECPEP	A375_MHC_IP_R2	2	429.8785400390625	3	430.232981	1287.67711	-0.48515	-0.00020873	1.0162	0.00043722	0.5311	0.0002285	430.23353985965554	18.955	0.24981	19.559	19.483	19.733	0.60308					5	4	2	0	0	0	0.95026	1	5687	5687		0.15932	0	1	2091700	+		36053	22927	26402	26601	35062	35062					0.04478202699033318
MRIMLLFTAI	10	Unmodified	_MRIMLLFTAI_					0	0	0		nc|ENSG00000166863|Q9UHF0-3|TAC3;ENSG00000166863|ENST00000458521|TAC3;nc|ENSG00000166863|Q9UHF0-2|TAC3	nc|ENSG00000166863|Q9UHF0-3|TAC3	nc|ENSG00000166863|Q9UHF0-3|TAC3	MULTI-SECPEP	A375_MHC_IP_R1	1	402.9402160644531	3	403.567979	1207.68211	-0.52544	-0.00021205	-0.31191	-0.00012588	-0.83734	-0.00033792	403.5678504467261	27.254	0.50572	27.254	27.027	27.533	0					12	9	2	0	0	0	0.94651	1	8160	8160		3.5871	1.9948	1	2630000			36054	7123	26403	26602	35063	35063					0.08657325726812815
MRKERWWETYF	11	Unmodified	_MRKERWWETYF_					0	0	0			REV__ENST00000292599.3_1_5:179203171-179203312:+|nuORF	REV__ENST00000292599.3_1_5:179203171-179203312:+|nuORF	MSMS	A375_MHC_IP_R2	2	544.6550903320312	3	544.597766	1630.77147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.274	1	89.006	88.506	89.506	0.7318								0	0	0	0.16358	1	33591	33591		0.094841	0	1		+		36055	23369	26404	26603	35064	35064					-0.018687480601329298
MRKGLGTFVF	10	Unmodified	_MRKGLGTFVF_					0	0	0			REV__ENST00000496978.5_1_4:154143422-154143545:+|nuORF	REV__ENST00000496978.5_1_4:154143422-154143545:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	578.7207641601562	2	578.320794	1154.62703	-0.26112	-0.00015101	0.86536	0.00050046	0.60425	0.00034945	578.3205936199026	127.64	3.0413	127.9	126.8	129.84	0.26592					141	59	4	0	0	0	0.71466	1	49564	49564		5.7319	1.4026	1	51263000	+		36056	25464	26405	26604	35065	35065					0.05590655250534837
MRKMPRLNWPV	11	Unmodified	_MRKMPRLNWPV_					0	0	0		ENST00000245157.9_1_16:56535387-56536245:-|nuORF	ENST00000245157.9_1_16:56535387-56536245:-|nuORF	ENST00000245157.9_1_16:56535387-56536245:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	714.790771484375	2	714.391759	1426.76896	-0.70847	-0.00050613	-2.0183	-0.0014419	-2.7268	-0.001948	714.3906029431128	126.35	0.55513	126.65	126.48	127.04	0.2951					14	10	3	0	0	0	0.95991	1	49433	49433		13.042	0	1	33305000			36057	10185	26406	26605	35066	35066					0.07265125001231354
MRKSQYRLHFY	11	Unmodified	_MRKSQYRLHFY_					0	0	0		ENSG00000215529|ENST00000400522|EFCAB8;nc|ENSG00000215529|A8MWE9|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	MULTI-MSMS	A375_MHC_IP_R1	1	765.797607421875	2	764.89572	1527.77689	-0.48678	-0.00037234	1.0855	0.00083032	0.59876	0.00045799	764.8963899880521	75.432	0.70497	75.432	75.16	75.865	0					30	13	3	0	0	0	0.73078	1	27459	27459		8.1555	5.1603	1	7043700			36058	9647	26407	26606	35067	35067					0.034109755223425964
MRPRKAFLL	9	Unmodified	_MRPRKAFLL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	A375_MHC_IP_R1	1	378.2989501953125	3	377.898828	1130.67465	0.43084	0.00016281	-0.3048	-0.00011518	0.12604	4.763E-05	377.89872181503563	40.634	0.70765	40.634	40.406	41.114	0					36	13	4	0	0	0	0.31062	1	13962	13962		29.841	10.479	1	11891000			36059	6152	26408	26607	35068	35068					0.11454354241391229
MRPRKAFLL	9	Unmodified	_MRPRKAFLL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	A375_MHC_IP_R2	2	378.2767333984375	3	377.898828	1130.67465	0.091854	3.4711E-05	-0.034225	-1.2934E-05	0.057629	2.1778E-05	377.89881043529624	39.419	0.61027	40.194	39.965	40.575	0.77451					33	11	4	0	0	0	0.22013	3	14592	14536;14585;14592		36.506	17.144	1	32035000			36060	6152	26408	26607	35069;35070;35071	35071					0.11454354241391229
MRPTLDLSP	9	Unmodified	_MRPTLDLSP_					0	0	0			REV__ENST00000470882.5_1_1:161143647-161146009:-|nuORF	REV__ENST00000470882.5_1_1:161143647-161146009:-|nuORF	MSMS	A375_MHC_IP_R2	2	515.2025146484375	2	515.273509	1028.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.027	1	85.763	85.263	86.263	0.73601								0	0	0	0.1493	1	32324	32324		22.736	0.98964	1		+		36061	25109	26409	26608	35072	35072					0.019340967085327065
MRQLWPEL	8	Unmodified	_MRQLWPEL_					0	0	0		ENST00000479668.5_1_7:150068827-150068932:+|nuORF	ENST00000479668.5_1_7:150068827-150068932:+|nuORF	ENST00000479668.5_1_7:150068827-150068932:+|nuORF	MSMS	A375_MHC_IP_R2	2	358.2427978515625	3	358.191788	1071.55354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.759	1	16.347	15.847	16.847	0.58774								0	0	0	0.16876	1	4691	4691		0.40072	0	1				36062	12480	26410	26609	35073	35073					0.020621068080572513
MRRCFEAACF	10	Unmodified	_MRRCFEAACF_					0	0	0			REV__chr16:77200-79425|214|13.09|0.73|4.16|+|0|None,MPG|1	REV__chr16:77200-79425|214|13.09|0.73|4.16|+|0|None,MPG|1	MSMS	A375_MHC_IP_R1	1	411.572021484375	3	411.849039	1232.52529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.618	1	16.618	16.118	17.118	0								0	0	0	0.15628	1	3875	3875		0.15932	0.01943	1		+		36063	15719	26411	26610	35074	35074					-0.08167282435192647
MRRCFEAACF	10	Unmodified	_MRRCFEAACF_					0	0	0			REV__chr16:77200-79425|214|13.09|0.73|4.16|+|0|None,MPG|1	REV__chr16:77200-79425|214|13.09|0.73|4.16|+|0|None,MPG|1	MSMS	A375_MHC_IP_R1	1	411.572021484375	3	411.849039	1232.52529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.717	1	17.717	17.217	18.217	0								0	0	0	0.15628	1	4171	4171		0.15932	0.01943	1		+		36064	15719	26411	26610	35075	35075					-0.08167282435192647
MRRCFEAACF	10	Unmodified	_MRRCFEAACF_					0	0	0			REV__chr16:77200-79425|214|13.09|0.73|4.16|+|0|None,MPG|1	REV__chr16:77200-79425|214|13.09|0.73|4.16|+|0|None,MPG|1	MSMS	A375_MHC_IP_R2	2	411.5718994140625	3	411.849039	1232.52529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.2243	1	2.6833	2.1833	3.1833	0.45901								0	0	0	0.15628	1	721	721		0.15932	0.01943	1		+		36065	15719	26411	26610	35076	35076					-0.08167282435192647
MRRCFEAACF	10	Unmodified	_MRRCFEAACF_					0	0	0			REV__chr16:77200-79425|214|13.09|0.73|4.16|+|0|None,MPG|1	REV__chr16:77200-79425|214|13.09|0.73|4.16|+|0|None,MPG|1	MSMS	A375_MHC_IP_R2	2	411.57183837890625	3	411.849039	1232.52529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.609	1	14.182	13.682	14.682	0.573								0	0	0	0.15628	1	4161	4161		0.15932	0.01943	1		+		36066	15719	26411	26610	35077	35077					-0.08167282435192647
MRRCFEAACF	10	Unmodified	_MRRCFEAACF_					0	0	0			REV__chr16:77200-79425|214|13.09|0.73|4.16|+|0|None,MPG|1	REV__chr16:77200-79425|214|13.09|0.73|4.16|+|0|None,MPG|1	MSMS	A375_MHC_IP_R2	2	411.57171630859375	3	411.849039	1232.52529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.691	1	15.264	14.764	15.764	0.573								0	0	0	0.15628	1	4425	4425		0.15932	0.01943	1		+		36067	15719	26411	26610	35078	35078					-0.08167282435192647
MRRCFEAACF	10	Unmodified	_MRRCFEAACF_					0	0	0			REV__chr16:77200-79425|214|13.09|0.73|4.16|+|0|None,MPG|1	REV__chr16:77200-79425|214|13.09|0.73|4.16|+|0|None,MPG|1	MSMS	A375_MHC_IP_R2	2	411.57177734375	3	411.849039	1232.52529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.411	1	15.999	15.499	16.499	0.58774								0	0	0	0.15628	1	4606	4606		0.15932	0.01943	1		+		36068	15719	26411	26610	35079	35079					-0.08167282435192647
MRRCFEAACF	10	Unmodified	_MRRCFEAACF_					0	0	0			REV__chr16:77200-79425|214|13.09|0.73|4.16|+|0|None,MPG|1	REV__chr16:77200-79425|214|13.09|0.73|4.16|+|0|None,MPG|1	MSMS	A375_MHC_IP_R2	2	411.5718994140625	3	411.849039	1232.52529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.925	1	16.512	16.012	17.012	0.58774								0	0	0	0.15628	1	4738	4738		0.15932	0.01943	1		+		36069	15719	26411	26610	35080	35080					-0.08167282435192647
MRRCFEAACF	10	Unmodified	_MRRCFEAACF_					0	0	0			REV__chr16:77200-79425|214|13.09|0.73|4.16|+|0|None,MPG|1	REV__chr16:77200-79425|214|13.09|0.73|4.16|+|0|None,MPG|1	MSMS	A375_MHC_IP_R2	2	411.57171630859375	3	411.849039	1232.52529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.594	1	17.19	16.69	17.69	0.59616								0	0	0	0.15628	1	4909	4909		0.15932	0.01943	1		+		36070	15719	26411	26610	35081	35081					-0.08167282435192647
MRRHKRRRRKQ	11	Unmodified	_MRRHKRRRRKQ_					0	0	0		ENST00000478247.1_1_3:183882805-183888540:+|nuORF;nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3;DVL3|p.N246Tfs*37|1|0.31|ENSG00000161202|chr3:184165464-184165464|A/-|frameshift_variant	ENST00000478247.1_1_3:183882805-183888540:+|nuORF	ENST00000478247.1_1_3:183882805-183888540:+|nuORF	MSMS	A375_MHC_IP_R2	2	536.711181640625	3	536.66232	1606.96513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.53	1	133.69	133.19	134.19	0.16487								0	0	0	0.16358	1	52529	52529		0.08335	0.08335	1				36071	6466	26412	26611	35082	35082					0.18592691009962437
MRRIYFRMRRE	11	Unmodified	_MRRIYFRMRRE_					0	0	0			REV__nc|ENSG00000141837|O00555-5|CACNA1A	REV__nc|ENSG00000141837|O00555-5|CACNA1A	MSMS	A375_MHC_IP_R2	2	807.8341064453125	2	807.435021	1612.85549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.56	1	143.58	143.08	144.08	0.024414								0	0	0	0.1636	1	56100	56100		0	0	1		+		36072	19286	26413	26612	35083	35083					0.0735750455573907
MRRMRRRRRWT	11	Unmodified	_MRRMRRRRRWT_					0	0	0		ENST00000281708.8_1_4:153271275-153332654:-|nuORF	ENST00000281708.8_1_4:153271275-153332654:-|nuORF	ENST00000281708.8_1_4:153271275-153332654:-|nuORF	MSMS	A375_MHC_IP_R2	2	830.971435546875	2	830.970428	1659.9263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.71	1	144.73	144.23	145.23	0.022552								0	0	0	0.1636	1	56516	56516		0	0	1				36073	10429	26414	26613	35084	35084					0.12273642383934202
MRRPWKTVPRK	11	Unmodified	_MRRPWKTVPRK_					0	0	0		ENST00000304141.4_1_2:192701235-192701394:-|nuORF	ENST00000304141.4_1_2:192701235-192701394:-|nuORF	ENST00000304141.4_1_2:192701235-192701394:-|nuORF	MSMS	A375_MHC_IP_R2	2	727.9306640625	2	727.929897	1453.84524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.844	1	68.579	68.079	69.079	0.73511								0	0	0	0.16334	1	25709	25709		1.3295	0	1				36074	10560	26415	26614	35085	35085					0.1364726489282475
MRRVPGRVGG	10	Unmodified	_MRRVPGRVGG_					0	0	0		nc|ENSG00000100207|Q9UGU0-2|TCF20;ENSG00000100207|ENST00000677622|TCF20	nc|ENSG00000100207|Q9UGU0-2|TCF20	nc|ENSG00000100207|Q9UGU0-2|TCF20	MULTI-SECPEP	A375_MHC_IP_R1	1	362.62420654296875	3	362.210065	1083.60837	0.19437	7.0402E-05	-0.98896	-0.00035821	-0.79459	-0.00028781	362.20960655843464	42.381	0.75897	42.381	41.828	42.587	0					15	14	2	0	0	0	0.92603	1	14625	14625		12.873	8.3437	1	1489700			36075	2132	26416	26615	35086	35086					0.06990538399350044
MRSAKKGG	8	Unmodified	_MRSAKKGG_					0	0	0			REV__ENSG00000111642|ENST00000544040|CHD4	REV__ENSG00000111642|ENST00000544040|CHD4	MSMS	A375_MHC_IP_R1	1	417.5722351074219	2	417.734354	833.454156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.941	1	58.941	58.441	59.441	0								0	0	0	0.16876	1	21186	21186		2.3027	0	1		+		36076	17680	26417	26616	35087	35087					0.030767089139771997
MRTAWTFPWTF	11	Unmodified	_MRTAWTFPWTF_					0	0	0		ENST00000549253.5_1_18:3449645-3457414:+|nuORF;ENST00000345133.9_1_18:3451757-3457414:+|nuORF	ENST00000549253.5_1_18:3449645-3457414:+|nuORF	ENST00000549253.5_1_18:3449645-3457414:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	482.6720275878906	3	481.900786	1442.68053	-0.3253	-0.00015676	-1.6952	-0.00081692	-2.0205	-0.00097368	481.90006369997866	20.148	0.3034	20.148	19.98	20.283	0					8	5	2	0	0	0	1.0002	1	5098	5098		2.8433	1.3882	1	1039500			36077	10904	26418	26617	35088	35088					-0.02310592037611059
MRTEMPCDQSL	11	Unmodified	_MRTEMPCDQSL_					0	0	0			REV__nc|ENSG00000036565|P54219-3|SLC18A1	REV__nc|ENSG00000036565|P54219-3|SLC18A1	MSMS	A375_MHC_IP_R2	2	655.7162475585938	2	655.780515	1309.54648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.38	1	83.123	82.623	83.623	0.74293								0	0	0	0.16108	1	31293	31293		13.042	0	1		+		36078	16322	26419	26618	35089	35089					-0.09591361916977803
MRTWLSRKWWH	11	Unmodified	_MRTWLSRKWWH_					0	0	0			REV__ENST00000526626.6_1_11:118898396-118900027:-|nuORF	REV__ENST00000526626.6_1_11:118898396-118900027:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	529.9623413085938	3	529.610228	1585.80886	-0.57628	-0.00030521	0.35603	0.00018855	-0.22026	-0.00011665	529.6103994856086	55.186	0.55795	55.186	54.924	55.482	0					34	10	5	0	0	0	0.73881	1	19745	19745		0.50596	0	1	14944000	+		36079	25778	26420	26619	35090	35090					0.039383879961633284
MRTWLSRKWWH	11	Unmodified	_MRTWLSRKWWH_					0	0	0			REV__ENST00000526626.6_1_11:118898396-118900027:-|nuORF	REV__ENST00000526626.6_1_11:118898396-118900027:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	530.0099487304688	3	529.610228	1585.80886	-0.57628	-0.00030521	0.35603	0.00018855	-0.22026	-0.00011665	529.6103994856086	55.186	0.55795	55.186	54.924	55.482	0					34	10	5	0	0	0	0.99999	1	19700	19700		3.0723	3.0723	1	14944000	+		36080	25778	26420	26619	35091	35091					0.039383879961633284
MRTWLSRKWWH	11	Unmodified	_MRTWLSRKWWH_					0	0	0			REV__ENST00000526626.6_1_11:118898396-118900027:-|nuORF	REV__ENST00000526626.6_1_11:118898396-118900027:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	529.9623413085938	3	529.610228	1585.80886	-0.80343	-0.00042551	0.17249	9.1354E-05	-0.63094	-0.00033415	529.9446481341757	54.456	0.65804	55.207	54.865	55.523	0.75075					38	12	4	0	0	0	0.73881	1	20576	20576		0.50596	0.09769	1	14790000	+		36081	25778	26420	26619	35092	35092					0.039383879961633284
MRTWLSRKWWH	11	Unmodified	_MRTWLSRKWWH_					0	0	0			REV__ENST00000526626.6_1_11:118898396-118900027:-|nuORF	REV__ENST00000526626.6_1_11:118898396-118900027:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	529.610228	1585.80886	-0.80343	-0.00042551	0.17249	9.1354E-05	-0.63094	-0.00033415	529.9446481341757	54.456	0.65804	55.207	54.865	55.523	0.75075	0.010292	-0.00013965	NaN	0.50596	38	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14790000	+		36082	25778	26420	26619							0.039383879961633284
MRVKKLLV	8	Unmodified	_MRVKKLLV_					0	0	0		ENSG00000139985|ENST00000603540|ADAM21;ENST00000530196.1_1_14:70713981-70714470:-|nuORF	ENSG00000139985|ENST00000603540|ADAM21	ENSG00000139985|ENST00000603540|ADAM21	MULTI-MSMS	A375_MHC_IP_R1	1	986.5534057617188	1	986.654319	985.647042	0.053099	5.2391E-05	0.00056136	5.5387E-07	0.053661	5.2944E-05	986.6544569623682	25.596	3.5934	25.596	23.838	27.432	0					90	70	2	0	0	0	0.77861	4	7404	7404;7661;7934;8203		0	0	1	9084500			36083	5121	26421	26620	35093;35094;35095;35096	35093					0.1536445098116701
MRYIFSVGWF	10	Unmodified	_MRYIFSVGWF_					0	0	0			REV__ACSM1|p.S319F|1|0.16|ENSG00000166743|chr16:20661830-20661830|G/A|missense_variant	REV__ACSM1|p.S319F|1|0.16|ENSG00000166743|chr16:20661830-20661830|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	654.6434936523438	2	653.326076	1304.6376	-0.73405	-0.00047957	2.004	0.0013092	1.2699	0.00082968	653.8287934445066	92.398	0.91239	93.137	92.734	93.646	0.73902					49	17	5	0	0	0	0.71564	1	35028	35028		5.2969	0.39987	1	19868000	+		36084	15299	26422	26621	35097	35097					-0.0025336209503166174
MRYLHRIYV	9	Oxidation (M)	_M(Oxidation (M))RYLHRIYV_		M(1)RYLHRIYV		M(53)RYLHRIYV	0	0	1		ENSG00000140526|ENST00000352732|ABHD2;ENST00000568308.1_1_15:89728670-89736600:+|nuORF	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-MSMS	A375_MHC_IP_R1	1	423.297607421875	3	422.897375	1265.6703	0.13635	5.766E-05	-0.35267	-0.00014914	-0.21632	-9.1481E-05	422.897163616434	35.508	0.96798	35.508	35.116	36.084	0					43	18	3	0	0	0	0.084766	1	11762	11762		53.404	34.683	1	2879600			36085	5163	26423	26622	35098	35098		274			0.048088450278100936
MRYLHRIYV	9	Unmodified	_MRYLHRIYV_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2;ENST00000568308.1_1_15:89728670-89736600:+|nuORF	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-MSMS	A375_MHC_IP_R1	1	417.6474914550781	3	417.565737	1249.67538	0.26862	0.00011217	-0.12108	-5.056E-05	0.14754	6.1606E-05	417.5656021876006	43.573	0.55872	43.573	43.3	43.859	0					24	10	3	0	0	0	0.062639	1	15184	15184		59.368	59.368	1	5113100			36086	5163	26423	26623	35099	35099					0.06053148890441662
MRYLHRIYV	9	Unmodified	_MRYLHRIYV_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2;ENST00000568308.1_1_15:89728670-89736600:+|nuORF	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-MSMS	A375_MHC_IP_R2	2	417.9654235839844	3	417.565737	1249.67538	0.014797	6.1788E-06	-0.5585	-0.00023321	-0.5437	-0.00022703	417.56551145122216	42.511	0.50891	43.284	43.014	43.523	0.7724					26	9	4	0	0	0	0.0092511	1	15805	15805		103.42	83.005	1	5632300			36087	5163	26423	26623	35100	35100					0.06053148890441662
MRYVASYLL	9	Unmodified	_MRYVASYLL_					0	0	0		ENST00000524867.1_1_11:810234-811767:+|nuORF;ENSG00000177600|ENST00000321153|RPLP2	ENST00000524867.1_1_11:810234-811767:+|nuORF	ENST00000524867.1_1_11:810234-811767:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	558.6998291015625	2	558.299527	1114.5845	-0.55334	-0.00030893	0.52591	0.00029361	-0.027426	-1.5312E-05	558.299740166815	89.699	0.65676	89.699	89.375	90.032	0					35	12	4	0	0	0	0.56537	1	32905	32905		29.082	2.1979	1	10191000			36088	8092	26424	26624	35101	35101					0.031792601223060046
MSAGPRYEY	9	Unmodified	_MSAGPRYEY_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000114978|Q9H8S9-2|MOB1A;ENST00000463975.1_1_2:74392309-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	537.7191772460938	2	537.239667	1072.46478	-0.62871	-0.00033777	0.6749	0.00036258	0.046197	2.4819E-05	537.2394524564844	33.797	0.30099	33.797	33.597	33.898	0					12	5	3	0	0	0	0.50892	1	11016	11016		19.362	4.5237	1	1743000			36089	3262	26425	26625	35102	35102					-0.06855353222272242
MSCGCCDSSA	10	Unmodified	_MSCGCCDSSA_					0	0	0			REV__nc|ENSG00000130653|Q6ZV29-2|PNPLA7	REV__nc|ENSG00000130653|Q6ZV29-2|PNPLA7	MSMS	A375_MHC_IP_R1	1	482.1361083984375	2	482.137381	962.260208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.393	1	87.393	86.893	87.893	0								0	0	0	0.15596	1	32065	32065		1.4819	0.79152	1		+		36090	27221	26426	26626	35103	35103					-0.22243119690949698
MSCSSDWTV	9	Unmodified	_MSCSSDWTV_					0	0	0		ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	MULTI-MSMS	A375_MHC_IP_R1	1	508.167724609375	2	508.19661	1014.37867	-0.41128	-0.00020901	-0.97758	-0.0004968	-1.3889	-0.00070582	508.1950380704106	74.283	0.76105	74.283	73.792	74.553	0					23	14	3	0	0	0	0.63811	1	27077	27077		12.532	3.1841	1	582560			36091	3806	26427	26627	35104	35104					-0.12794681119271445
MSDLLSPLLY	10	Unmodified	_MSDLLSPLLY_					0	0	0		ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;nc|ENSG00000121749|Q8TC07|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	MULTI-MSMS	A375_MHC_IP_R1	1	576.703857421875	2	576.304475	1150.5944	-0.41029	-0.00023645	-0.54214	-0.00031244	-0.95243	-0.00054889	576.3040653662799	131.6	0.25262	131.6	131.48	131.73	0					7	4	2	0	0	0	0.028981	1	50748	50748		81.89	0	1	9801100			36092	3734	26428	26628	35105	35105					0.025124033370275356
MSDLLSPLLY	10	Unmodified	_MSDLLSPLLY_					0	0	0		ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;nc|ENSG00000121749|Q8TC07|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	MULTI-MSMS	A375_MHC_IP_R1	1	1152.685791015625	1	1151.60167	1150.5944	-0.20581	-0.00023701	-1.3738	-0.001582	-1.5796	-0.001819	1151.6012159012166	131.57	0.2532	131.57	131.43	131.68	0					10	4	3	0	0	0	0.21466	1	50754	50754		47.749	0	1	5227200			36093	3734	26428	26628	35106	35106					0.025124033370275356
MSDLLSPLLY	10	Unmodified	_MSDLLSPLLY_					0	0	0		ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;nc|ENSG00000121749|Q8TC07|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	MULTI-MATCH	A375_MHC_IP_R2	2		1	1151.60167	1150.5944	0.16407	0.00018895	-0.38626	-0.00044482	-0.22219	-0.00025587	1151.6026870703602	131.43	0.15414	131.62	131.49	131.65	0.18953	0.026434	0.00032971	NaN	47.749	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6662100			36094	3734	26428	26628							0.025124033370275356
MSDPYMPSYY	10	2 Oxidation (M)	_M(Oxidation (M))SDPYM(Oxidation (M))PSYY_		M(1)SDPYM(1)PSYY		M(69)SDPYM(69)PSYY	0	0	2		ENSG00000185728|ENST00000539294|YTHDF3	ENSG00000185728|ENST00000539294|YTHDF3	ENSG00000185728|ENST00000539294|YTHDF3	MULTI-SECPEP	A375_MHC_IP_R1	1	643.640625	2	643.241215	1284.46788	-0.40191	-0.00025852	-0.065914	-4.2399E-05	-0.46782	-0.00030092	643.2411586749505	62.95	0.87073	62.95	62.403	63.274	0					39	16	3	0	0	0	0.19943	1	22754	22754		69.105	60.512	1	2257400			36095	8688	26429	26629	35107	35107		410;411			-0.16297890950386318
MSDPYMPSYY	10	2 Oxidation (M)	_M(Oxidation (M))SDPYM(Oxidation (M))PSYY_		M(1)SDPYM(1)PSYY		M(60)SDPYM(60)PSYY	0	0	2		ENSG00000185728|ENST00000539294|YTHDF3	ENSG00000185728|ENST00000539294|YTHDF3	ENSG00000185728|ENST00000539294|YTHDF3	MULTI-MSMS	A375_MHC_IP_R2	2	643.6405639648438	2	643.241215	1284.46788	-0.84112	-0.00054104	-0.38043	-0.00024471	-1.2216	-0.00078575	643.742533796189	62.53	0.81203	63.273	62.622	63.434	0.74263					33	15	3	0	0	0	0.11665	1	23711	23711		60.074	48.579	1	1999300			36096	8688	26429	26629	35108	35108		410;411			-0.16297890950386318
MSDPYMPSYY	10	Oxidation (M)	_MSDPYM(Oxidation (M))PSYY_		M(0.001)SDPYM(0.999)PSYY		M(-30)SDPYM(30)PSYY	0	0	1		ENSG00000185728|ENST00000539294|YTHDF3	ENSG00000185728|ENST00000539294|YTHDF3	ENSG00000185728|ENST00000539294|YTHDF3	MULTI-MSMS	A375_MHC_IP_R2	2	635.643798828125	2	635.243757	1268.47296	-0.81024	-0.0005147	-0.16558	-0.00010519	-0.97582	-0.00061988	635.2439214510845	72.963	0.51003	73.699	73.48	73.99	0.73541					19	9	3	0	0	0	0.028981	1	27732	27732		81.89	73.145	2	1960000			36097	8688	26429	26630	35109	35109		410;411			-0.15053587087800224
MSDPYMPSYY	10	Unmodified	_MSDPYMPSYY_					0	0	0		ENSG00000185728|ENST00000539294|YTHDF3	ENSG00000185728|ENST00000539294|YTHDF3	ENSG00000185728|ENST00000539294|YTHDF3	MULTI-MSMS	A375_MHC_IP_R2	2	628.1477661132812	2	627.2463	1252.47805	-0.67518	-0.0004235	-0.23169	-0.00014533	-0.90687	-0.00056883	627.2460430356406	93.736	0.60788	94.481	94.109	94.717	0.74474					20	11	3	0	0	0	0.6502	1	35588	35588		17.113	6.289	1	3605100			36098	8688	26429	26631	35110	35110					-0.13809283225168656
MSDQGQPLS	9	Unmodified	_MSDQGQPLS_					0	0	0		ENST00000375446.4_1_9:95883958-95884504:-|nuORF	ENST00000375446.4_1_9:95883958-95884504:-|nuORF	ENST00000375446.4_1_9:95883958-95884504:-|nuORF	MSMS	A375_MHC_IP_R2	2	481.6685485839844	2	481.716024	961.417496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.71	1	37.481	36.981	37.981	0.7709								0	0	0	0.15486	1	13399	13399		12.241	0.60036	1				36099	11271	26430	26632	35111	35111					-0.0647563249325458
MSDSYLPSYY	10	Oxidation (M)	_M(Oxidation (M))SDSYLPSYY_		M(1)SDSYLPSYY		M(63)SDSYLPSYY	0	0	1		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-MSMS	A375_MHC_IP_R1	1	621.654541015625	2	621.255179	1240.49581	-0.33733	-0.00020957	-0.47898	-0.00029757	-0.81631	-0.00050714	621.2550565482122	88.434	1.4258	88.434	88	89.426	0					46	27	2	0	0	0	0.10503	1	32472	32472		62.573	47.734	1	3605300			36100	9273	26431	26633	35112	35112		421			-0.11482244698686372
MSDSYLPSYY	10	Oxidation (M)	_M(Oxidation (M))SDSYLPSYY_		M(1)SDSYLPSYY		M(65)SDSYLPSYY	0	0	1		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-SECPEP	A375_MHC_IP_R1	1	621.6542358398438	2	621.255179	1240.49581	-0.56996	-0.00035409	-0.19631	-0.00012196	-0.76627	-0.00047605	621.2548381854873	86.931	0.71024	86.931	86.578	87.289	0					37	13	3	0	0	0	0.1433	1	31830	31830		65.235	43.698	1	12976000			36101	9273	26431	26633	35113	35113		421			-0.11482244698686372
MSDSYLPSYY	10	Oxidation (M)	_M(Oxidation (M))SDSYLPSYY_		M(1)SDSYLPSYY		M(50)SDSYLPSYY	0	0	1		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-SECPEP	A375_MHC_IP_R2	2	621.654541015625	2	621.255179	1240.49581	-0.6549	-0.00040686	-0.30438	-0.0001891	-0.95928	-0.00059596	621.2551562898594	88.013	1.4191	88.744	88.316	89.735	0.7318					42	27	2	0	0	0	0.27864	1	33473	33473		49.933	30.676	1	2083100			36102	9273	26431	26633	35114	35114		421			-0.11482244698686372
MSDSYLPSYY	10	Oxidation (M)	_M(Oxidation (M))SDSYLPSYY_		M(1)SDSYLPSYY		M(120)SDSYLPSYY	0	0	1		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-SECPEP	A375_MHC_IP_R2	2	621.4786987304688	2	621.255179	1240.49581	-0.57789	-0.00035901	0.66153	0.00041098	0.083649	5.1967E-05	621.2551739180955	86.41	1.8797	87.143	86.438	88.318	0.73301					60	36	3	0	0	0	0.012551	1	32843	32843		118.89	75.036	1	11519000			36103	9273	26431	26633	35115	35115		421			-0.11482244698686372
MSDSYLPSYY	10	Unmodified	_MSDSYLPSYY_					0	0	0		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-MSMS	A375_MHC_IP_R1	1	613.2816162109375	2	613.257722	1224.50089	-0.43915	-0.00026931	0.055695	3.4156E-05	-0.38346	-0.00023516	613.257769504147	95.236	1.2674	95.236	94.599	95.867	0					52	24	3	0	0	0	0.0075909	2	35017	34955;35017		131.27	78.999	1	12671000			36104	9273	26431	26634	35116;35117	35117					-0.10237940836054804
MSDSYLPSYY	10	Unmodified	_MSDSYLPSYY_					0	0	0		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-MSMS	A375_MHC_IP_R1	1	1226.27099609375	1	1225.50817	1224.50089	-0.11754	-0.00014404	0.33551	0.00041117	0.21797	0.00026712	1225.508720501404	95.267	0.70906	95.267	94.905	95.614	0					35	13	4	0	0	0	0.48529	1	35121	35121		29.082	7.5446	1	10835000			36105	9273	26431	26634	35118	35118					-0.10237940836054804
MSDSYLPSYY	10	Unmodified	_MSDSYLPSYY_					0	0	0		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-MSMS	A375_MHC_IP_R2	2	613.6580810546875	2	613.257722	1224.50089	-0.30976	-0.00018996	-0.51607	-0.00031648	-0.82582	-0.00050644	613.2575102319386	94.745	1.1182	95.49	95.02	96.138	0.74474					59	21	4	0	0	0	0.028981	1	35925	35925		81.89	56.491	1	11874000			36106	9273	26431	26634	35119	35119					-0.10237940836054804
MSDVVKGVY	9	Unmodified	_MSDVVKGVY_					0	0	0		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MULTI-MSMS	A375_MHC_IP_R1	1	499.3009948730469	2	499.254785	996.495018	-0.41179	-0.00020559	0.16025	8.0004E-05	-0.25154	-0.00012558	499.25488284608986	46.4	0.452	46.4	46.144	46.596	0					13	8	2	0	0	0	0.11715	1	16300	16300		47.594	22.195	1	3323900			36107	6487	26432	26635	35120	35120					-0.003369945570625532
MSDVVKGVY	9	Unmodified	_MSDVVKGVY_					0	0	0		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MSMS	A375_MHC_IP_R2	2	499.3009948730469	2	499.254785	996.495018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.671	1	46.436	45.936	46.936	0.76519								0	0	0	0.03854	1	17080	17080		59.368	33.969	1				36108	6487	26432	26635	35121	35121					-0.003369945570625532
MSDVVKGVY	9	Oxidation (M)	_M(Oxidation (M))SDVVKGVY_		M(1)SDVVKGVY		M(46)SDVVKGVY	0	0	1		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MULTI-SECPEP	A375_MHC_IP_R1	1	507.6517028808594	2	507.252243	1012.48993	-0.24059	-0.00012204	-0.40037	-0.00020309	-0.64096	-0.00032513	507.2519090148261	35.932	0.50816	35.932	35.625	36.133	0					20	9	3	0	0	0	0.27114	1	11991	11991		45.74	33.499	1	2500200			36109	6487	26432	26636	35122	35122		347			-0.015812984196713842
MSDVVKGVY	9	Oxidation (M)	_M(Oxidation (M))SDVVKGVY_		M(1)SDVVKGVY		M(53)SDVVKGVY	0	0	1		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MULTI-SECPEP	A375_MHC_IP_R2	2	507.6517333984375	2	507.252243	1012.48993	-0.96865	-0.00049135	0.087796	4.4535E-05	-0.88085	-0.00044681	507.25221674244074	35.143	0.70645	35.907	35.677	36.384	0.76338					22	13	3	0	0	0	0.16595	1	12715	12715		53.404	36.291	1	5747600			36110	6487	26432	26636	35123	35123		347			-0.015812984196713842
MSEADFAEIE	10	Unmodified	_MSEADFAEIE_					0	0	0			REV__ENST00000570844.1_1_16:30002083-30002886:+|nuORF	REV__ENST00000570844.1_1_16:30002083-30002886:+|nuORF	MSMS	A375_MHC_IP_R1	1	381.2643737792969	3	381.162112	1140.46451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.981	1	17.981	17.481	18.481	0								0	0	0	0.15637	1	4250	4250		0.15932	0	1		+		36111	26280	26433	26637	35124	35124					-0.10010817732791111
MSEADFAEIE	10	Unmodified	_MSEADFAEIE_					0	0	0			REV__ENST00000570844.1_1_16:30002083-30002886:+|nuORF	REV__ENST00000570844.1_1_16:30002083-30002886:+|nuORF	MSMS	A375_MHC_IP_R1	1	381.2647705078125	3	381.162112	1140.46451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.614	1	18.614	18.114	19.114	0								0	0	0	0.15637	1	4448	4448		0.15932	0	1		+		36112	26280	26433	26637	35125	35125					-0.10010817732791111
MSEADFAEIE	10	Unmodified	_MSEADFAEIE_					0	0	0			REV__ENST00000570844.1_1_16:30002083-30002886:+|nuORF	REV__ENST00000570844.1_1_16:30002083-30002886:+|nuORF	MSMS	A375_MHC_IP_R1	1	381.2483215332031	3	381.162112	1140.46451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.742	1	18.742	18.242	19.242	0								0	0	0	0.15637	1	4487	4487		0.15932	0	1		+		36113	26280	26433	26637	35126	35126					-0.10010817732791111
MSEDKPQDY	9	Unmodified	_MSEDKPQDY_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENST00000465552.1_1_3:41277978-41278230:+|nuORF;ENST00000485265.1_1_3:41277322-41278230:+|nuORF	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	A375_MHC_IP_R1	1	557.1317749023438	2	556.731871	1111.44919	-0.72323	-0.00040265	0.43562	0.00024252	-0.28761	-0.00016012	556.7320992848706	23.322	0.71326	23.322	23.176	23.889	0					17	13	2	0	0	0	0.005606	1	6396	6396		189.73	89.933	1	17629000			36114	7257	26434	26638	35127	35127					-0.10207684529973449
MSEDKPQDY	9	Unmodified	_MSEDKPQDY_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENST00000465552.1_1_3:41277978-41278230:+|nuORF;ENST00000485265.1_1_3:41277322-41278230:+|nuORF	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	A375_MHC_IP_R2	2	557.1317749023438	2	556.731871	1111.44919	-1.1061	-0.00061582	-1.1674	-0.00064991	-2.2735	-0.0012657	556.7319569316418	22.481	0.76578	23.105	22.698	23.464	0.62424					52	14	6	0	0	0	0.0071491	1	7137	7137		166.77	97.664	1	8488100			36115	7257	26434	26638	35128	35128					-0.10207684529973449
MSEEHTAVY	9	Oxidation (M)	_M(Oxidation (M))SEEHTAVY_		M(1)SEEHTAVY		M(82)SEEHTAVY	0	0	1		ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF	ENSG00000167716|ENST00000409644|WDR81	ENSG00000167716|ENST00000409644|WDR81	MULTI-MSMS	A375_MHC_IP_R1	1	542.1513671875	2	541.726589	1081.43863	-0.86461	-0.00046838	0.36716	0.0001989	-0.49744	-0.00026948	541.7263708744537	23.853	0.71189	23.853	23.635	24.347	0					25	13	3	0	0	0	0.022213	1	6635	6635		81.613	57.593	1	5491200			36116	7216	26435	26639	35129	35129		366			-0.09883667184408296
MSEEHTAVY	9	Oxidation (M)	_M(Oxidation (M))SEEHTAVY_		M(1)SEEHTAVY		M(78)SEEHTAVY	0	0	1		ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF	ENSG00000167716|ENST00000409644|WDR81	ENSG00000167716|ENST00000409644|WDR81	MULTI-MSMS	A375_MHC_IP_R2	2	542.15185546875	2	541.726589	1081.43863	-1.1293	-0.00061179	-0.48868	-0.00026473	-1.618	-0.00087652	541.725693798926	23.424	0.70838	24.054	23.777	24.485	0.63014					22	13	2	0	0	0	0.026268	1	7543	7543		78.149	49.068	1	5403400			36117	7216	26435	26639	35130	35130		366			-0.09883667184408296
MSEEHTAVY	9	Unmodified	_MSEEHTAVY_					0	0	0		ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF	ENSG00000167716|ENST00000409644|WDR81	ENSG00000167716|ENST00000409644|WDR81	MULTI-SECPEP	A375_MHC_IP_R1	1	534.1289672851562	2	533.729132	1065.44371	-0.82187	-0.00043866	-1.0382	-0.00055412	-1.8601	-0.00099278	533.7293518824429	27.053	0.45308	27.053	26.928	27.381	0					21	8	3	0	0	0	0.20567	1	8175	8175		46.021	24.274	1	7541000			36118	7216	26435	26640	35131	35131					-0.08639363321776727
MSEEHTAVY	9	Unmodified	_MSEEHTAVY_					0	0	0		ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF	ENSG00000167716|ENST00000409644|WDR81	ENSG00000167716|ENST00000409644|WDR81	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1288452148438	2	533.729132	1065.44371	-1.1224	-0.00059906	-0.74427	-0.00039724	-1.8667	-0.0009963	533.7291450530334	26.546	0.50916	27.206	27.008	27.517	0.65992					22	9	3	0	0	0	0.07754	1	8994	8994		46.021	24.274	1	6797300			36119	7216	26435	26640	35132	35132					-0.08639363321776727
MSEERTLLY	9	Unmodified	_MSEERTLLY_					0	0	0		nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28;nc|ENSG00000214944|Q8N1W1-5|ARHGEF28;ENST00000510312.6_1_5:73178320-73193923:+|nuORF	nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	MULTI-SECPEP	A375_MHC_IP_R1	1	571.1630249023438	2	571.281531	1140.54851	-0.15111	-8.6326E-05	0.44144	0.00025218	0.29033	0.00016586	571.2813366499482	54.421	0.60633	54.421	54.013	54.619	0					14	11	2	0	0	0	0.53098	1	19399	19399		27.223	10.281	1	1652200			36120	9632	26436	26641	35133	35133					-0.016142418451863705
MSEERTLLY	9	Unmodified	_MSEERTLLY_					0	0	0		nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28;nc|ENSG00000214944|Q8N1W1-5|ARHGEF28;ENST00000510312.6_1_5:73178320-73193923:+|nuORF	nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	MULTI-SECPEP	A375_MHC_IP_R2	2	571.1638793945312	2	571.281531	1140.54851	-0.78705	-0.00044963	0.967	0.00055243	0.17995	0.0001028	571.2817297601895	53.641	0.45967	54.392	54.046	54.505	0.75105					12	8	3	0	0	0	0.65623	1	20209	20209		18.373	5.3306	1	1552000			36121	9632	26436	26641	35134	35134					-0.016142418451863705
MSFDLRESP	9	Unmodified	_MSFDLRESP_					0	0	0			REV__ENSG00000135406|ENST00000257860|PRPH	REV__ENSG00000135406|ENST00000257860|PRPH	MULTI-SECPEP	A375_MHC_IP_R2	2	541.6795043945312	2	541.252774	1080.491	-0.63852	-0.0003456	-0.074838	-4.0506E-05	-0.71336	-0.00038611	541.2524106153735	43.877	0.50428	44.646	44.43	44.934	0.7691					16	9	2	0	0	0	0.67539	1	16424	16424		11.495	2.1116	1	1224000	+		36122	18848	26437	26642	35135	35135					-0.0460308405079104
MSFNWTTNREY	11	Unmodified	_MSFNWTTNREY_					0	0	0			REV__ENSG00000212128|ENST00000390677|TAS2R13	REV__ENSG00000212128|ENST00000390677|TAS2R13	MULTI-MSMS	A375_MHC_IP_R2	2	483.94635009765625	3	483.546959	1447.61905	-0.60646	-0.00029325	-0.69488	-0.000336	-1.3013	-0.00062926	483.88094705372055	30.64	0.4028	31.359	31.114	31.517	0.71857					20	7	4	0	0	0	0.60387	1	10779	10779		23.016	8.7975	1	8972800	+		36123	22605	26438	26643	35136	35136					-0.08685568527539544
MSGVTSVLTKY	11	Unmodified	_MSGVTSVLTKY_					0	0	0			REV__nc|ENSG00000125844|Q9P2E9-3|RRBP1	REV__nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	396.2654113769531	3	395.877647	1184.61111	-0.26579	-0.00010522	1.2868	0.00050942	1.021	0.00040419	395.8781180640536	24.158	0.40553	24.158	24.042	24.447	0					17	7	3	0	0	0	0.98397	1	6737	6737		13.519	13.519	1	7328600	+		36124	18367	26439	26644	35137	35137					0.026189042229589177
MSGVTSVLTKY	11	Unmodified	_MSGVTSVLTKY_					0	0	0			REV__nc|ENSG00000125844|Q9P2E9-3|RRBP1	REV__nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MSMS	A375_MHC_IP_R2	2	396.26519775390625	3	395.877647	1184.61111	-0.4387	-0.00017367	3.4717	0.0013744	3.0331	0.0012007	395.8791191459462	23.338	0.7088	23.968	23.726	24.435	0.63014					21	13	2	0	0	0	0.67023	1	7494	7494		17.863	4.2483	1	5213100	+		36125	18367	26439	26644	35138	35138					0.026189042229589177
MSGWKKNL	8	Unmodified	_MSGWKKNL_					0	0	0			REV__ENST00000309784.8_1_3:160155667-160155736:-|nuORF	REV__ENST00000309784.8_1_3:160155667-160155736:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	482.6241760253906	2	482.257662	962.500772	-0.47593	-0.00022952	-0.56144	-0.00027076	-1.0374	-0.00050028	482.2576648372406	69.088	0.40566	69.823	69.677	70.082	0.73511					9	7	2	0	0	0	0.91495	1	26129	26129		12.532	0	1	613610	+		36126	23491	26440	26645	35139	35139					0.018021487452415386
MSHMLGLPVP	10	Unmodified	_MSHMLGLPVP_					0	0	0		tr|U7SL15|U7SL15_FUSNUCopper-translocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02035PE=3SV=1	tr|U7SL15|U7SL15_FUSNUCopper-translocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02035PE=3SV=1	tr|U7SL15|U7SL15_FUSNUCopper-translocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02035PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	540.6831665039062	2	541.28028	1080.54601	-0.71455	-0.00038677	-0.75275	-0.00040745	-1.4673	-0.00079422	541.2796434000769	68.703	0.40711	68.703	68.361	68.769	0					11	7	2	0	0	0	0.72086	1	24866	24866		18.146	6.6516	1	819060			36127	29491	26441	26646	35140	35140					0.008956312161444657
MSIQLKQTF	9	Unmodified	_MSIQLKQTF_					0	0	0			REV__ENST00000268182.9_1_15:90972869-90982583:+|nuORF	REV__ENST00000268182.9_1_15:90972869-90982583:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	366.2672119140625	3	365.867082	1094.57942	0.18112	6.6266E-05	-0.14669	-5.367E-05	0.034428	1.2596E-05	365.86701372311006	34.526	0.6573	34.526	34.203	34.861	0					29	12	4	0	0	0	0.63327	1	11438	11438		5.7834	0	1	17440000	+		36128	23265	26442	26647	35141	35141					0.03590956259677114
MSLEFYGK	8	Unmodified	_MSLEFYGK_					0	0	0		CCDC136|p.S743F|1|0.27|ENSG00000128596|chr7:128811999-128811999|C/T|missense_variant	CCDC136|p.S743F|1|0.27|ENSG00000128596|chr7:128811999-128811999|C/T|missense_variant	CCDC136|p.S743F|1|0.27|ENSG00000128596|chr7:128811999-128811999|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	487.7372741699219	2	487.736228	973.457904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.261	1	67.997	67.497	68.497	0.73631								0	0	0	0.15041	1	25479	25479		48.346	10.372	1				36129	303	26443	26648	35142	35142					-0.029886661028285744
MSLFHAEFQ	9	Unmodified	_MSLFHAEFQ_					0	0	0			REV__tr|U7SEN4|U7SEN4_FUSNUGlutamate-1-semialdehyde2,1-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemLPE=3SV=1	REV__tr|U7SEN4|U7SEN4_FUSNUGlutamate-1-semialdehyde2,1-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemLPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	555.677001953125	2	555.257859	1108.50117	-0.91908	-0.00051032	-2.2316	-0.0012391	-3.1506	-0.0017494	555.7578544370706	33.055	0.7634	33.805	33.38	34.143	0.75015					24	14	3	0	0	0	0.61998	1	11755	11755		13.906	0.86358	1	1365100	+		36130	28163	26444	26649	35143	35143					-0.04874476325562682
MSLRNSRVF	9	Unmodified	_MSLRNSRVF_					0	0	0		ENST00000380701.7_1_9:15564009-15564066:+|nuORF	ENST00000380701.7_1_9:15564009-15564066:+|nuORF	ENST00000380701.7_1_9:15564009-15564066:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	370.9342041015625	3	370.534326	1108.58115	0.11739	4.3495E-05	-0.098651	-3.6553E-05	0.018735	6.9421E-06	370.53431687729653	41.103	0.45405	41.103	40.863	41.317	0					20	8	3	0	0	0	0.75782	1	14170	14170		7.4771	0.84669	1	7292900			36131	11357	26445	26650	35144	35144					0.031200100683008714
MSLRNSRVF	9	Unmodified	_MSLRNSRVF_					0	0	0		ENST00000380701.7_1_9:15564009-15564066:+|nuORF	ENST00000380701.7_1_9:15564009-15564066:+|nuORF	ENST00000380701.7_1_9:15564009-15564066:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	370.93438720703125	3	370.534326	1108.58115	0.29459	0.00010916	-0.23571	-8.734E-05	0.05888	2.1817E-05	370.534213109827	40.18	0.60858	40.955	40.676	41.285	0.77451					17	11	2	0	0	0	0.56023	1	14863	14863		17.049	17.049	1	9771200			36132	11357	26445	26650	35145	35145					0.031200100683008714
MSLSRPRRR	9	Unmodified	_MSLSRPRRR_					0	0	0		ENST00000405260.5_1_2:242082421-242089560:-|nuORF	ENST00000405260.5_1_2:242082421-242089560:-|nuORF	ENST00000405260.5_1_2:242082421-242089560:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	387.304931640625	3	386.892736	1157.65638	0.37964	0.00014688	-0.7657	-0.00029624	-0.38605	-0.00014936	386.8924560571963	71.313	0.30703	71.313	71.057	71.364	0					7	5	2	0	0	0	0.73363	1	25864	25864		10.8	1.2555	1	1012900			36133	11589	26446	26651	35146	35146					0.08385612319375468
MSLTAFSPED	10	Unmodified	_MSLTAFSPED_					0	0	0		ADGRV1|p.V1760M|1|0.24|ENSG00000164199|chr5:90675410-90675410|G/A|missense_variant	ADGRV1|p.V1760M|1|0.24|ENSG00000164199|chr5:90675410-90675410|G/A|missense_variant	ADGRV1|p.V1760M|1|0.24|ENSG00000164199|chr5:90675410-90675410|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	549.705078125	2	549.244615	1096.47468	-0.74197	-0.00040752	-2.2855	-0.0012553	-3.0275	-0.0016628	549.243371976304	98.467	0.61098	99.227	98.945	99.556	0.75977					19	11	2	0	0	0	0.60556	1	37287	37287		20.454	3.5113	1	2156800			36134	74	26447	26652	35147	35147					-0.0697021000753466
MSMMSCDATY	10	Unmodified	_MSMMSCDATY_					0	0	0			REV__SON|p.R1122C|1|0.29|ENSG00000159140|chr21:33552595-33552595|C/T|missense_variant	REV__SON|p.R1122C|1|0.29|ENSG00000159140|chr21:33552595-33552595|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	570.1956787109375	2	570.197438	1138.38032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.337	1	27.337	26.837	27.837	0								0	0	0	0.15531	1	8277	8277		3.5965	0.70727	1		+		36135	28025	26448	26653	35148	35148					-0.18333131417193727
MSNEDMDDD	9	Unmodified	_MSNEDMDDD_					0	0	0			REV__SALL3|p.Q1022Sfs*4|1|0.58|ENSG00000256463|chr18:78995055-78995055|C/-|frameshift_variant	REV__SALL3|p.Q1022Sfs*4|1|0.58|ENSG00000256463|chr18:78995055-78995055|C/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	536.1502685546875	2	536.165704	1070.31685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.497	1	23.497	22.997	23.997	0								0	0	0	0.15486	1	6460	6460		4.756	2.6963	1		+		36136	22882	26449	26654	35149	35149					-0.21549077329086685
MSSPLSKEL	9	Oxidation (M)	_M(Oxidation (M))SSPLSKEL_		M(1)SSPLSKEL		M(87)SSPLSKEL	0	0	1		ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENST00000451325.1_1_10:5346696-5346741:-|nuORF;ENST00000578115.1_1_17:8285406-8285628:-|nuORF	ENSG00000161970|ENST00000648839|RPL26	ENSG00000161970|ENST00000648839|RPL26	MULTI-MSMS	A375_MHC_IP_R1	1	504.6591491699219	2	504.257525	1006.5005	-0.50939	-0.00025686	-0.49012	-0.00024715	-0.9995	-0.00050401	504.25725208166045	41.051	2.8916	41.051	40.203	43.095	0					89	54	3	0	0	0	0.017012	1	14011	14011		87.258	16.125	1	7039800			36137	1144	26450	26655	35150	35150		17			-0.0024931576525659693
MSSPLSKEL	9	Oxidation (M)	_M(Oxidation (M))SSPLSKEL_		M(1)SSPLSKEL		M(93)SSPLSKEL	0	0	1		ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENST00000451325.1_1_10:5346696-5346741:-|nuORF;ENST00000578115.1_1_17:8285406-8285628:-|nuORF	ENSG00000161970|ENST00000648839|RPL26	ENSG00000161970|ENST00000648839|RPL26	MULTI-MSMS	A375_MHC_IP_R1	1	504.65704345703125	2	504.257525	1006.5005	-0.29522	-0.00014887	-0.26021	-0.00013121	-0.55543	-0.00028008	504.2573002178758	52.111	0.86362	52.111	51.575	52.438	0					22	16	2	0	0	0	0.012447	1	18505	18505		93.166	18.237	1	2747800			36138	1144	26450	26655	35151	35151		17			-0.0024931576525659693
MSSPLSKEL	9	Oxidation (M)	_M(Oxidation (M))SSPLSKEL_		M(1)SSPLSKEL		M(140)SSPLSKEL	0	0	1		ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENST00000451325.1_1_10:5346696-5346741:-|nuORF;ENST00000578115.1_1_17:8285406-8285628:-|nuORF	ENSG00000161970|ENST00000648839|RPL26	ENSG00000161970|ENST00000648839|RPL26	MULTI-SECPEP	A375_MHC_IP_R1	1	504.1797180175781	2	504.257525	1006.5005	-0.5931	-0.00029908	0.76101	0.00038374	0.16791	8.4668E-05	504.25761523954134	39.746	1.0157	39.746	39.289	40.304	0					58	19	5	0	0	0	0.010931	1	13660	13660		136.39	58.243	1	28120000			36139	1144	26450	26655	35152	35152		17			-0.0024931576525659693
MSSPLSKEL	9	Oxidation (M)	_M(Oxidation (M))SSPLSKEL_		M(1)SSPLSKEL		M(130)SSPLSKEL	0	0	1		ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENST00000451325.1_1_10:5346696-5346741:-|nuORF;ENST00000578115.1_1_17:8285406-8285628:-|nuORF	ENSG00000161970|ENST00000648839|RPL26	ENSG00000161970|ENST00000648839|RPL26	MULTI-MSMS	A375_MHC_IP_R2	2	504.6551818847656	2	504.257525	1006.5005	-0.92755	-0.00046773	0.42467	0.00021414	-0.50288	-0.00025358	504.2574173705616	38.934	1.1207	39.709	39.25	40.371	0.77451					57	21	6	0	0	0	0.010044	1	14252	14252		125.04	53.116	1	28815000			36140	1144	26450	26655	35153	35153		17			-0.0024931576525659693
MSSPLSKEL	9	Unmodified	_MSSPLSKEL_					0	0	0		ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENST00000451325.1_1_10:5346696-5346741:-|nuORF;ENST00000578115.1_1_17:8285406-8285628:-|nuORF	ENSG00000161970|ENST00000648839|RPL26	ENSG00000161970|ENST00000648839|RPL26	MULTI-MSMS	A375_MHC_IP_R1	1	496.6596984863281	2	496.260068	990.505582	-0.3142	-0.00015593	0.060431	2.9989E-05	-0.25377	-0.00012594	496.2601018739239	52.109	1.2205	52.109	51.676	52.897	0					54	23	4	0	0	0	0.014789	1	18464	18464		90.135	28.777	1	25012000			36141	1144	26450	26656	35154	35154					0.00994988097352234
MSSPLSKEL	9	Unmodified	_MSSPLSKEL_					0	0	0		ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENST00000451325.1_1_10:5346696-5346741:-|nuORF;ENST00000578115.1_1_17:8285406-8285628:-|nuORF	ENSG00000161970|ENST00000648839|RPL26	ENSG00000161970|ENST00000648839|RPL26	MULTI-MSMS	A375_MHC_IP_R2	2	496.659423828125	2	496.260068	990.505582	-0.62752	-0.00031141	-0.34119	-0.00016932	-0.96871	-0.00048073	496.25989629469325	51.286	1.2686	52.038	51.511	52.78	0.75225					56	24	4	0	0	0	0.027818	1	19228	19228		76.825	22.051	1	22852000			36142	1144	26450	26656	35155	35155					0.00994988097352234
MSSPTQRTY	9	Unmodified	_MSSPTQRTY_					0	0	0		ENSG00000159166|ENST00000391967|LAD1	ENSG00000159166|ENST00000391967|LAD1	ENSG00000159166|ENST00000391967|LAD1	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1502685546875	2	535.750398	1069.48624	-0.9831	-0.0005267	0.27907	0.00014951	-0.70403	-0.00037718	535.7506672349883	23.457	0.35688	23.457	23.33	23.687	0					14	6	3	0	0	0	0.076731	1	6460	6460		80.676	29.821	1	8495600			36143	6354	26451	26657	35156	35156					-0.0457196819352248
MSTSVTRGY	9	Unmodified	_MSTSVTRGY_					0	0	0		ENST00000565642.5_1_16:71777395-71799448:-|nuORF;ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.70281982421875	2	501.239667	1000.46478	-0.4755	-0.00023834	-0.15741	-7.8898E-05	-0.6329	-0.00031724	501.23960620564753	27.508	0.35366	27.508	27.381	27.735	0					12	6	2	0	0	0	0.29123	2	8380	8347;8380		31.268	13.122	1	5691600			36144	7107	26452	26658	35157;35158	35158					-0.035433532222555186
MSWVLGEYSY	10	Unmodified	_MSWVLGEYSY_					0	0	0		nc|ENSG00000081014|Q9UPM8-2|AP4E1;ENSG00000081014|ENST00000261842|AP4E1	nc|ENSG00000081014|Q9UPM8-2|AP4E1	nc|ENSG00000081014|Q9UPM8-2|AP4E1	MSMS	A375_MHC_IP_R1	1	617.7837524414062	2	617.776082	1233.53761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.089	1	77.089	76.589	77.589	0								0	0	0	0.15332	1	28117	28117		10.074	3.3508	1				36145	1727	26453	26659	35159	35159					-0.06981644219513328
MSYIYIYI	8	Unmodified	_MSYIYIYI_					0	0	0			REV__ENST00000454857.5_1_10:119966135-119966366:+|nuORF	REV__ENST00000454857.5_1_10:119966135-119966366:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	533.7003784179688	2	533.269904	1064.52526	-0.57166	-0.00030485	2.8278	0.001508	2.2561	0.0012031	533.7727366825709	77.986	1.0696	77.986	77.537	78.606	0					47	20	4	0	0	0	0.76683	2	28303	28303;28369		15.768	6.4208	1	3575600	+		36146	24924	26454	26660	35160;35161	35160					-0.0044263589190904895
MTAEPRSL	8	Unmodified	_MTAEPRSL_					0	0	0		ENST00000451648.1_1_20:61294700-61297915:-|nuORF;ENST00000433126.1_1_20:61297286-61297915:-|nuORF;ENST00000411824.1_1_20:61294700-61297915:-|nuORF	ENST00000451648.1_1_20:61294700-61297915:-|nuORF	ENST00000451648.1_1_20:61294700-61297915:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	453.13116455078125	2	452.731477	903.448402	-0.62548	-0.00028317	0.28058	0.00012703	-0.3449	-0.00015615	452.7315695679581	29.175	0.5078	29.175	28.996	29.504	0					14	9	2	0	0	0	0.21478	1	9092	9092		82.529	27.756	1	12403000			36147	11643	26455	26661	35162	35162					-0.00718434388352307
MTAEPRSL	8	Unmodified	_MTAEPRSL_					0	0	0		ENST00000451648.1_1_20:61294700-61297915:-|nuORF;ENST00000433126.1_1_20:61297286-61297915:-|nuORF;ENST00000411824.1_1_20:61294700-61297915:-|nuORF	ENST00000451648.1_1_20:61294700-61297915:-|nuORF	ENST00000451648.1_1_20:61294700-61297915:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	453.1311950683594	2	452.731477	903.448402	-0.75342	-0.0003411	-0.05417	-2.4525E-05	-0.80759	-0.00036562	452.7314345759623	28.55	0.40398	29.245	28.976	29.38	0.69477					11	7	2	0	0	0	0.16549	1	9832	9832		78.728	23.954	1	20556000			36148	11643	26455	26661	35163	35163					-0.00718434388352307
MTAEPRSL	8	Oxidation (M)	_M(Oxidation (M))TAEPRSL_		M(1)TAEPRSL		M(69)TAEPRSL	0	0	1		ENST00000451648.1_1_20:61294700-61297915:-|nuORF;ENST00000433126.1_1_20:61297286-61297915:-|nuORF;ENST00000411824.1_1_20:61294700-61297915:-|nuORF	ENST00000451648.1_1_20:61294700-61297915:-|nuORF	ENST00000451648.1_1_20:61294700-61297915:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	461.1285095214844	2	460.728935	919.443317	-0.46403	-0.00021379	0.12486	5.7529E-05	-0.33916	-0.00015626	460.72893593606585	24.02	1.0638	24.02	23.533	24.597	0					38	20	3	0	0	0	0.28442	1	6710	6710		69.105	14.331	1	16388000			36149	11643	26455	26662	35164	35164		452			-0.01962738250961138
MTAEPRSL	8	Oxidation (M)	_M(Oxidation (M))TAEPRSL_		M(1)TAEPRSL		M(69)TAEPRSL	0	0	1		ENST00000451648.1_1_20:61294700-61297915:-|nuORF;ENST00000433126.1_1_20:61297286-61297915:-|nuORF;ENST00000411824.1_1_20:61294700-61297915:-|nuORF	ENST00000451648.1_1_20:61294700-61297915:-|nuORF	ENST00000451648.1_1_20:61294700-61297915:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	461.1285400390625	2	460.728935	919.443317	-0.71978	-0.00033162	0.089191	4.1093E-05	-0.63059	-0.00029053	460.7289310637979	23.562	1.0159	24.192	23.928	24.944	0.63014					33	19	3	0	0	0	0.28442	1	7601	7601		69.105	14.331	1	8560500			36150	11643	26455	26662	35165	35165		452			-0.01962738250961138
MTAGVDGHSW	10	Unmodified	_MTAGVDGHSW_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	A375_MHC_IP_R2	2	531.2085571289062	2	530.729466	1059.44438	-0.43495	-0.00023084	-0.56251	-0.00029854	-0.99746	-0.00052938	531.2307193534838	43.734	0.20052	44.503	44.38	44.58	0.7691					5	3	2	0	0	0	0.57505	1	16305	16305		22.736	0.98964	1	476850			36151	3161	26456	26663	35166	35166					-0.08296523882063411
MTAHFHLKRKF	11	Unmodified	_MTAHFHLKRKF_					0	0	0		GABRA2|p.I250F|1|0.32|ENSG00000151834|chr4:46303568-46303568|T/A|missense_variant	GABRA2|p.I250F|1|0.32|ENSG00000151834|chr4:46303568-46303568|T/A|missense_variant	GABRA2|p.I250F|1|0.32|ENSG00000151834|chr4:46303568-46303568|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	709.415283203125	2	708.390074	1414.76559	-0.59507	-0.00042154	1.6166	0.0011452	1.0216	0.00072367	708.392875261999	96.074	0.9641	96.074	95.817	96.781	0					38	18	3	0	0	0	0.7359	1	35516	35516		3.2813	0.28607	1	3241900			36152	14031	26457	26664	35167	35167					0.07480198218831902
MTAPEEDTPA	10	Unmodified	_MTAPEEDTPA_					0	0	0		nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB	nc|ENSG00000168477|P22105-1|TNXB	nc|ENSG00000168477|P22105-1|TNXB	MULTI-MSMS	A375_MHC_IP_R2	2	531.6839599609375	2	531.226422	1060.43829	-0.93988	-0.00049929	0.63711	0.00033845	-0.30277	-0.00016084	531.2267619506107	60.796	0.60849	61.541	61.16	61.769	0.74503					17	11	2	0	0	0	0.70329	1	22920	22920		10.824	0.75	1	1956700			36153	7306	26458	26665	35168	35168					-0.08951086904244221
MTCCEPFCEC	10	Unmodified	_MTCCEPFCEC_					0	0	0		ENST00000537802.5_1_13:111317902-111318010:-|nuORF	ENST00000537802.5_1_13:111317902-111318010:-|nuORF	ENST00000537802.5_1_13:111317902-111318010:-|nuORF	MSMS	A375_MHC_IP_R1	1	583.1767578125	2	583.178191	1164.34183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.814	1	29.814	29.314	30.314	0								0	0	0	0.15591	1	9393	9393		1.6526	1.0511	1				36154	13252	26459	26666	35169	35169					-0.23376760323367307
MTDIKNDSY	9	Unmodified	_MTDIKNDSY_					0	0	0		ENSG00000137819|ENST00000395407|PAQR5	ENSG00000137819|ENST00000395407|PAQR5	ENSG00000137819|ENST00000395407|PAQR5	MULTI-MSMS	A375_MHC_IP_R1	1	544.1423950195312	2	543.742239	1085.46993	-0.67439	-0.00036669	0.53944	0.00029332	-0.13495	-7.3378E-05	543.7428213297898	27.559	0.50553	27.559	27.28	27.786	0					16	9	3	0	0	0	0.0083527	1	8387	8387		128.93	81.184	1	5552500			36155	4922	26460	26667	35170	35170					-0.06939094150311576
MTDIKNDSY	9	Unmodified	_MTDIKNDSY_					0	0	0		ENSG00000137819|ENST00000395407|PAQR5	ENSG00000137819|ENST00000395407|PAQR5	ENSG00000137819|ENST00000395407|PAQR5	MULTI-MSMS	A375_MHC_IP_R2	2	544.142333984375	2	543.742239	1085.46993	-0.93548	-0.00050866	0.87028	0.00047321	-0.065203	-3.5454E-05	543.7428144220003	26.986	0.41024	27.646	27.466	27.876	0.65992					13	7	2	0	0	0	0.0012561	2	9184	9146;9184		151.48	87.244	1	5521800			36156	4922	26460	26667	35171;35172	35172					-0.06939094150311576
MTDIKNDSY	9	Oxidation (M)	_M(Oxidation (M))TDIKNDSY_		M(1)TDIKNDSY		M(76)TDIKNDSY	0	0	1		ENSG00000137819|ENST00000395407|PAQR5	ENSG00000137819|ENST00000395407|PAQR5	ENSG00000137819|ENST00000395407|PAQR5	MULTI-MSMS	A375_MHC_IP_R2	2	551.6693115234375	2	551.739696	1101.46484	-1.1126	-0.00061384	0.079303	4.3755E-05	-1.0333	-0.00057009	551.7396977500495	23.087	0.50859	23.717	23.521	24.029	0.63014					22	9	4	0	0	0	0.029287	2	7377	7377;7389		75.571	46.489	1	6166700			36157	4922	26460	26668	35173;35174	35173		262			-0.08183398012920406
MTDKAPPGV	9	Unmodified	_MTDKAPPGV_					0	0	0		ENSG00000162545|ENST00000375078|CAMK2N1;ENST00000489020.1_1_1:20810144-20811127:-|nuORF	ENSG00000162545|ENST00000375078|CAMK2N1	ENSG00000162545|ENST00000375078|CAMK2N1	MULTI-SECPEP	A375_MHC_IP_R1	1	458.6339111328125	2	458.233853	914.453153	-0.43625	-0.00019991	-0.021309	-9.7645E-06	-0.45756	-0.00020967	458.2338390686862	27.102	0.80588	27.102	26.575	27.381	0					22	15	2	0	0	0	0.14606	1	8121	8121		63.961	49.122	1	2996800			36158	6548	26461	26669	35175	35175					-0.007495502455867609
MTDKAPPGV	9	Oxidation (M)	_M(Oxidation (M))TDKAPPGV_		M(1)TDKAPPGV		M(54)TDKAPPGV	0	0	1		ENSG00000162545|ENST00000375078|CAMK2N1;ENST00000489020.1_1_1:20810144-20811127:-|nuORF	ENSG00000162545|ENST00000375078|CAMK2N1	ENSG00000162545|ENST00000375078|CAMK2N1	MULTI-SECPEP	A375_MHC_IP_R1	1	466.6310119628906	2	466.23131	930.448068	-0.521	-0.00024291	-0.58018	-0.0002705	-1.1012	-0.00051341	466.2308787156782	23.538	0.66224	23.538	23.227	23.889	0					20	12	2	0	0	0	0.24324	1	6514	6514		53.833	21.527	1	2526500			36159	6548	26461	26670	35176	35176		349			-0.019938541082069605
MTDKAPPGV	9	Oxidation (M)	_M(Oxidation (M))TDKAPPGV_		M(1)TDKAPPGV		M(44)TDKAPPGV	0	0	1		ENSG00000162545|ENST00000375078|CAMK2N1;ENST00000489020.1_1_1:20810144-20811127:-|nuORF	ENSG00000162545|ENST00000375078|CAMK2N1	ENSG00000162545|ENST00000375078|CAMK2N1	MULTI-SECPEP	A375_MHC_IP_R2	2	466.6312255859375	2	466.23131	930.448068	-0.98146	-0.00045759	0.22541	0.00010509	-0.75606	-0.0003525	466.2312772887692	23.109	0.50859	23.739	23.521	24.029	0.63014					12	9	2	0	0	0	0.37663	1	7435	7435		43.772	15.286	1	2139000			36160	6548	26461	26670	35177	35177		349			-0.019938541082069605
MTDPSKNLGY	10	Unmodified	_MTDPSKNLGY_					0	0	0		nc|ENSG00000198797|Q9C0B6-2|BRINP2;ENST00000478325.1_1_1:177226076-177250661:+|nuORF;ENSG00000198797|ENST00000361539|BRINP2;BRINP2|p.M678I|1|0.27|ENSG00000198797|chr1:177281210-177281210|G/A|missense_variant	nc|ENSG00000198797|Q9C0B6-2|BRINP2	nc|ENSG00000198797|Q9C0B6-2|BRINP2	MULTI-MSMS	A375_MHC_IP_R1	1	563.665771484375	2	563.265881	1124.51721	-0.74844	-0.00042157	0.11129	6.2686E-05	-0.63715	-0.00035889	563.2660227789903	41.296	0.76084	41.296	40.913	41.674	0					40	14	4	0	0	0	0.011121	1	14200	14200		110.79	48.22	1	18218000			36161	9330	26462	26671	35178	35178					-0.04006814879312515
MTDPSKNLGY	10	Unmodified	_MTDPSKNLGY_					0	0	0		nc|ENSG00000198797|Q9C0B6-2|BRINP2;ENST00000478325.1_1_1:177226076-177250661:+|nuORF;ENSG00000198797|ENST00000361539|BRINP2;BRINP2|p.M678I|1|0.27|ENSG00000198797|chr1:177281210-177281210|G/A|missense_variant	nc|ENSG00000198797|Q9C0B6-2|BRINP2	nc|ENSG00000198797|Q9C0B6-2|BRINP2	MULTI-MSMS	A375_MHC_IP_R2	2	563.6653442382812	2	563.265881	1124.51721	-0.67342	-0.00037931	0.015589	8.7806E-06	-0.65783	-0.00037053	563.2660205121051	40.592	1.0674	41.366	41.031	42.098	0.77451					41	20	4	0	0	0	0.0013911	1	15006	15006		143.91	87.732	1	20336000			36162	9330	26462	26671	35179	35179					-0.04006814879312515
MTDPSKNLGY	10	Oxidation (M)	_M(Oxidation (M))TDPSKNLGY_		M(1)TDPSKNLGY		M(100)TDPSKNLGY	0	0	1		nc|ENSG00000198797|Q9C0B6-2|BRINP2;ENST00000478325.1_1_1:177226076-177250661:+|nuORF;ENSG00000198797|ENST00000361539|BRINP2;BRINP2|p.M678I|1|0.27|ENSG00000198797|chr1:177281210-177281210|G/A|missense_variant	nc|ENSG00000198797|Q9C0B6-2|BRINP2	nc|ENSG00000198797|Q9C0B6-2|BRINP2	MULTI-SECPEP	A375_MHC_IP_R1	1	571.663818359375	2	571.263339	1140.51212	-0.38956	-0.00022254	0.68541	0.00039155	0.29585	0.00016901	571.7650562279756	32.964	1.2156	32.964	32.734	33.95	0					32	23	2	0	0	0	0.020754	1	10745	10745		100.71	67.923	1	4427900			36163	9330	26462	26672	35180	35180		430			-0.052511187419213456
MTDPSKNLGY	10	Oxidation (M)	_M(Oxidation (M))TDPSKNLGY_		M(1)TDPSKNLGY		M(110)TDPSKNLGY	0	0	1		nc|ENSG00000198797|Q9C0B6-2|BRINP2;ENST00000478325.1_1_1:177226076-177250661:+|nuORF;ENSG00000198797|ENST00000361539|BRINP2;BRINP2|p.M678I|1|0.27|ENSG00000198797|chr1:177281210-177281210|G/A|missense_variant	nc|ENSG00000198797|Q9C0B6-2|BRINP2	nc|ENSG00000198797|Q9C0B6-2|BRINP2	MULTI-MSMS	A375_MHC_IP_R2	2	571.2105712890625	2	571.263339	1140.51212	-0.32124	-0.00018352	1.7296	0.00098805	1.4083	0.00080454	571.2631202357219	31.055	0.71053	31.774	31.417	32.128	0.71857					36	13	3	0	0	0	0.011121	1	10934	10934		110.79	54.616	1	19397000			36164	9330	26462	26672	35181	35181		430			-0.052511187419213456
MTDPSKNLGY	10	Oxidation (M)	_M(Oxidation (M))TDPSKNLGY_		M(1)TDPSKNLGY		M(97)TDPSKNLGY	0	0	1		nc|ENSG00000198797|Q9C0B6-2|BRINP2;ENST00000478325.1_1_1:177226076-177250661:+|nuORF;ENSG00000198797|ENST00000361539|BRINP2;BRINP2|p.M678I|1|0.27|ENSG00000198797|chr1:177281210-177281210|G/A|missense_variant	nc|ENSG00000198797|Q9C0B6-2|BRINP2	nc|ENSG00000198797|Q9C0B6-2|BRINP2	MULTI-MSMS	A375_MHC_IP_R2	2	571.6625366210938	2	571.263339	1140.51212	-0.45181	-0.0002581	0.40121	0.0002292	-0.0506	-2.8906E-05	571.2636816118694	40.637	0.71171	41.412	41.082	41.794	0.77451					15	13	2	0	0	0	0.0036544	1	15063	15063		96.936	49.187	1	2665000			36165	9330	26462	26672	35182	35182		430			-0.052511187419213456
MTEEEQIAY	9	Unmodified	_MTEEEQIAY_					0	0	0		ENSG00000159352|ENST00000368884|PSMD4;ENST00000470396.1_1_1:151238797-151239150:+|nuORF;ENST00000427779.5_2_1:151238655-151239816:+|nuORF	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MULTI-MSMS	A375_MHC_IP_R1	1	557.6419067382812	2	557.242072	1112.46959	-0.48826	-0.00027208	0.29095	0.00016213	-0.19731	-0.00010995	557.2421649128873	54.715	0.66161	54.715	54.314	54.975	0					33	12	4	0	0	0	0.018546	1	19507	19507		85.272	49.145	1	9477200			36166	6368	26463	26673	35183	35183					-0.08214513870143492
MTEEEQIAY	9	Unmodified	_MTEEEQIAY_					0	0	0		ENSG00000159352|ENST00000368884|PSMD4;ENST00000470396.1_1_1:151238797-151239150:+|nuORF;ENST00000427779.5_2_1:151238655-151239816:+|nuORF	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MULTI-MSMS	A375_MHC_IP_R2	2	557.6417846679688	2	557.242072	1112.46959	-1.0904	-0.00060761	0.27295	0.0001521	-0.81744	-0.00045551	557.2422380332407	54.089	0.66338	54.84	54.505	55.169	0.75105					30	12	3	0	0	0	0.0095277	1	20385	20385		108	71.87	1	10109000			36167	6368	26463	26673	35184	35184					-0.08214513870143492
MTEEEQIAY	9	Oxidation (M)	_M(Oxidation (M))TEEEQIAY_		M(1)TEEEQIAY		M(48)TEEEQIAY	0	0	1		ENSG00000159352|ENST00000368884|PSMD4;ENST00000470396.1_1_1:151238797-151239150:+|nuORF;ENST00000427779.5_2_1:151238655-151239816:+|nuORF	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MULTI-SECPEP	A375_MHC_IP_R1	1	565.6390991210938	2	565.239529	1128.46451	-0.44336	-0.00025061	-0.50483	-0.00028535	-0.94819	-0.00053595	565.2392725693428	46.483	0.40139	46.483	46.195	46.596	0					17	7	3	0	0	0	0.20645	1	16279	16279		47.749	28.492	1	4805500			36168	6368	26463	26674	35185	35185		341			-0.0945881773277506
MTEKQLNLY	9	Unmodified	_MTEKQLNLY_					0	0	0		ENST00000536250.1_1_11:61204372-61205638:+|nuORF;ENSG00000256591|ENST00000541135|unknown;ENSG00000167985|ENST00000301761|SDHAF2	ENST00000536250.1_1_11:61204372-61205638:+|nuORF	ENST00000536250.1_1_11:61204372-61205638:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	570.6915283203125	2	570.291899	1138.56925	-0.33286	-0.00018983	-0.13341	-7.6082E-05	-0.46627	-0.00026591	570.2919916481324	50.422	0.66233	50.422	50.101	50.764	0					25	12	3	0	0	0	0.028087	1	17847	17847		96.367	62.264	1	6122100			36169	7246	26464	26675	35186	35186					0.0055034853444340115
MTEKQLNLY	9	Unmodified	_MTEKQLNLY_					0	0	0		ENST00000536250.1_1_11:61204372-61205638:+|nuORF;ENSG00000256591|ENST00000541135|unknown;ENSG00000167985|ENST00000301761|SDHAF2	ENST00000536250.1_1_11:61204372-61205638:+|nuORF	ENST00000536250.1_1_11:61204372-61205638:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	570.6914672851562	2	570.291899	1138.56925	-0.59445	-0.00033901	-0.039664	-2.262E-05	-0.63412	-0.00036163	570.291966391091	49.622	0.71069	50.379	49.994	50.705	0.75695					26	13	3	0	0	0	0.087712	1	18636	18636		66.457	30.33	1	8266100			36170	7246	26464	26675	35187	35187					0.0055034853444340115
MTEKQLNLY	9	Oxidation (M)	_M(Oxidation (M))TEKQLNLY_		M(1)TEKQLNLY		M(48)TEKQLNLY	0	0	1		ENST00000536250.1_1_11:61204372-61205638:+|nuORF;ENSG00000256591|ENST00000541135|unknown;ENSG00000167985|ENST00000301761|SDHAF2	ENST00000536250.1_1_11:61204372-61205638:+|nuORF	ENST00000536250.1_1_11:61204372-61205638:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	578.6979370117188	2	578.289356	1154.56416	-0.57037	-0.00032984	-0.98224	-0.00056802	-1.5526	-0.00089786	578.2890163989442	41.491	0.45957	41.491	41.266	41.725	0					18	8	3	0	0	0	0.14606	1	14289	14289		47.594	16.326	1	3437000			36171	7246	26464	26676	35188	35188		368			-0.006939553281654298
MTEKQLNLY	9	Oxidation (M)	_M(Oxidation (M))TEKQLNLY_		M(1)TEKQLNLY		M(56)TEKQLNLY	0	0	1		ENST00000536250.1_1_11:61204372-61205638:+|nuORF;ENSG00000256591|ENST00000541135|unknown;ENSG00000167985|ENST00000301761|SDHAF2	ENST00000536250.1_1_11:61204372-61205638:+|nuORF	ENST00000536250.1_1_11:61204372-61205638:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	578.6984252929688	2	578.289356	1154.56416	-0.36342	-0.00021016	-0.88197	-0.00051003	-1.2454	-0.00072019	578.2891596875544	40.689	0.40701	41.464	41.234	41.641	0.77451					16	7	3	0	0	0	0.14606	1	15065	15065		55.503	55.503	1	3816000			36172	7246	26464	26676	35189	35189		368			-0.006939553281654298
MTELPAPLSY	10	Oxidation (M)	_M(Oxidation (M))TELPAPLSY_		M(1)TELPAPLSY		M(93)TELPAPLSY	0	0	1		nc|ENSG00000080815|P49768-4|PSEN1;nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1	nc|ENSG00000080815|P49768-4|PSEN1	nc|ENSG00000080815|P49768-4|PSEN1	MULTI-MSMS	A375_MHC_IP_R1	1	569.6779174804688	2	569.278457	1136.54236	-0.28657	-0.00016314	-0.19945	-0.00011354	-0.48602	-0.00027668	569.278448262256	96.429	0.66085	96.429	96.069	96.73	0					27	12	3	0	0	0	0.0097732	2	35416	35416;35489		92.653	38.821	1	2468300			36173	1721	26465	26677	35190;35191	35190		55			-0.020447600767283802
MTELPAPLSY	10	Oxidation (M)	_M(Oxidation (M))TELPAPLSY_		M(1)TELPAPLSY		M(100)TELPAPLSY	0	0	1		nc|ENSG00000080815|P49768-4|PSEN1;nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1	nc|ENSG00000080815|P49768-4|PSEN1	nc|ENSG00000080815|P49768-4|PSEN1	MULTI-SECPEP	A375_MHC_IP_R2	2	569.6790161132812	2	569.278457	1136.54236	-0.20335	-0.00011576	-0.61291	-0.00034892	-0.81626	-0.00046468	569.2778859081807	95.667	0.71371	96.418	95.99	96.703	0.75045					30	13	3	0	0	0	0.021795	1	36314	36314		103.35	49.521	1	2966200			36174	1721	26465	26677	35192	35192		55			-0.020447600767283802
MTELPAPLSY	10	Unmodified	_MTELPAPLSY_					0	0	0		nc|ENSG00000080815|P49768-4|PSEN1;nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1	nc|ENSG00000080815|P49768-4|PSEN1	nc|ENSG00000080815|P49768-4|PSEN1	MULTI-SECPEP	A375_MHC_IP_R1	1	561.6812744140625	2	561.281	1120.54745	-0.27939	-0.00015682	0.075761	4.2523E-05	-0.20363	-0.00011429	561.280966262041	106.65	0.71643	106.65	106.27	106.98	0					22	13	2	0	0	0	0.043964	1	39153	39153		118.89	56.322	1	2427500			36175	1721	26465	26678	35193	35193					-0.008004562141195493
MTELPAPLSY	10	Unmodified	_MTELPAPLSY_					0	0	0		nc|ENSG00000080815|P49768-4|PSEN1;nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1	nc|ENSG00000080815|P49768-4|PSEN1	nc|ENSG00000080815|P49768-4|PSEN1	MULTI-SECPEP	A375_MHC_IP_R2	2	561.6803588867188	2	561.281	1120.54745	-0.60816	-0.00034135	-0.014787	-8.2998E-06	-0.62295	-0.00034965	561.2806821139981	105.88	0.81521	106.64	106.17	106.99	0.75977					27	15	3	0	0	0	0.084015	1	40055	40055		107.19	40.73	1	1731600			36176	1721	26465	26678	35194	35194					-0.008004562141195493
MTELVELYPD	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MTELVELYPD_					1	0	0			REV__CLCN6|p.N58Y|1|0.42|ENSG00000011021|chr1:11815870-11815870|A/T|missense_variant	REV__CLCN6|p.N58Y|1|0.42|ENSG00000011021|chr1:11815870-11815870|A/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	626.6932983398438	2	626.294304	1250.57406	-0.60948	-0.00038171	-0.28778	-0.00018023	-0.89725	-0.00056195	626.2940164080685	58.161	1.6772	58.161	57.618	59.295	0					58	32	3	0	0	0	0.19329	1	20838	20838		49.933	30.571	1	6079300	+		36177	15797	26466	26679	35195	35195					-0.04120812113433203
MTERQDLVY	9	Unmodified	_MTERQDLVY_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-SECPEP	A375_MHC_IP_R1	1	578.1784057617188	2	577.779156	1153.54376	-0.4072	-0.00023527	-0.47787	-0.0002761	-0.88507	-0.00051138	577.7789391972665	41.765	0.46127	41.765	41.521	41.982	0					18	8	3	0	0	0	0.30133	1	14427	14427		51.415	27.395	1	4703200			36178	2516	26467	26680	35196	35196					-0.026871259879726495
MTERQDLVY	9	Unmodified	_MTERQDLVY_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-SECPEP	A375_MHC_IP_R2	2	578.1776123046875	2	577.779156	1153.54376	-0.44277	-0.00025582	-0.2503	-0.00014462	-0.69307	-0.00040044	577.7787217911932	41.009	0.40611	41.784	41.54	41.946	0.77451					17	7	3	0	0	0	0.23894	1	15197	15197		55.503	35.049	1	6129600			36179	2516	26467	26680	35197	35197					-0.026871259879726495
MTFPEYSL	8	Unmodified	_MTFPEYSL_					0	0	0			REV__MUSK|p.P599S|1|0.29|ENSG00000030304|chr9:110787706-110787706|C/T|missense_variant	REV__MUSK|p.P599S|1|0.29|ENSG00000030304|chr9:110787706-110787706|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	495.15234375	2	494.228236	986.44192	-0.79258	-0.00039171	-0.0097838	-4.8354E-06	-0.80236	-0.00039655	494.2257061209556	56.321	0.50922	57.071	56.847	57.356	0.75015					16	9	3	0	0	0	0.77123	1	21260	21260		14.582	0	1	837590	+		36180	27056	26468	26681	35198	35198					-0.05184372339749643
MTGPFFRY	8	Unmodified	_MTGPFFRY_					0	0	0		nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7;ENSG00000125505|ENST00000245615|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-SECPEP	A375_MHC_IP_R1	1	510.1304931640625	2	509.744388	1017.47422	-0.31744	-0.00016181	-0.97451	-0.00049675	-1.292	-0.00065857	509.7435849729402	79.159	0.66475	79.159	78.909	79.574	0					16	12	2	0	0	0	0.95423	1	28976	28976		12.532	12.532	1	731080			36181	3971	26469	26682	35199	35199					-0.03381540146074258
MTGVAFIEIN	10	Unmodified	_MTGVAFIEIN_					0	0	0			REV__ENST00000372829.7_1_X:100809276-100809327:+|nuORF	REV__ENST00000372829.7_1_X:100809276-100809327:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	548.197265625	2	547.781167	1093.54778	-0.73999	-0.00040535	0.048343	2.6481E-05	-0.69164	-0.00037887	547.7811405971518	90.463	0.61041	90.463	90.235	90.845	0					14	11	2	0	0	0	0.77204	1	33361	33361		21.537	0	1	876760	+		36182	24075	26470	26683	35200	35200					0.004749635057351043
MTGWCRASL	9	Unmodified	_MTGWCRASL_					0	0	0			REV__EPOR|p.E336A|1|0.31|ENSG00000187266|chr19:11378504-11378504|T/G|missense_variant	REV__EPOR|p.E336A|1|0.31|ENSG00000187266|chr19:11378504-11378504|T/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	512.2027587890625	2	512.73878	1023.46301	-0.76883	-0.00039421	-1.3565	-0.00069551	-2.1253	-0.0010897	513.2392212741025	45.662	0.25109	46.427	46.201	46.453	0.76519					6	4	2	0	0	0	0.69504	1	17001	17001		7.9102	0	1	506980	+		36183	26586	26471	26684	35201	35201					-0.04778685511871572
MTHLMVDF	8	Unmodified	_MTHLMVDF_					0	0	0		nc|ENSG00000106701|Q9BXM9-2|FSD1L;ENSG00000106701|ENST00000481272|FSD1L	nc|ENSG00000106701|Q9BXM9-2|FSD1L	nc|ENSG00000106701|Q9BXM9-2|FSD1L	MULTI-MSMS	A375_MHC_IP_R1	1	497.6495361328125	2	497.230256	992.445959	-0.56009	-0.00027849	-0.62676	-0.00031165	-1.1869	-0.00059014	497.2298695425573	66.242	0.65807	66.242	65.871	66.529	0					26	12	3	0	0	0	0.77123	1	23872	23872		14.582	0	1	4689400			36184	2708	26472	26685	35202	35202					-0.05056606117670981
MTIILDAGT	9	Oxidation (M)	_M(Oxidation (M))TIILDAGT_		M(1)TIILDAGT		M(46)TIILDAGT	0	0	1		tr|U7T2Z3|U7T2Z3_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00513PE=4SV=1	tr|U7T2Z3|U7T2Z3_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00513PE=4SV=1	tr|U7T2Z3|U7T2Z3_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00513PE=4SV=1	MSMS	A375_MHC_IP_R1	1	475.681396484375	2	475.746793	949.479033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.411	1	41.411	40.911	41.911	0								0	0	0	0.083165	1	14292	14292		46.021	19.137	1				36185	29950	26473	26686	35203	35203		494			0.0022729920602841958
MTILEIRTCP	10	Unmodified	_MTILEIRTCP_					0	0	0			REV__ITGA6|p.F99Lfs*31|1|0.34|ENSG00000091409|chr2:172465651-172465651|T/-|frameshift_variant	REV__ITGA6|p.F99Lfs*31|1|0.34|ENSG00000091409|chr2:172465651-172465651|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	589.2056274414062	2	588.809402	1175.60425	-0.41658	-0.00024528	-4.2845	-0.0025228	-4.7011	-0.002768	588.8059667735438	83.88	0.50694	83.88	83.634	84.141	0					21	9	3	0	0	0	0.66308	1	30730	30730		16.149	2.5342	1	3456800	+		36186	26802	26474	26687	35204	35204					0.02347268070775499
MTLDNISRAA	10	Unmodified	_MTLDNISRAA_					0	0	0		ENST00000564746.1_1_16:19078986-19083491:+|nuORF;nc|ENSG00000167186|Q99807-2|COQ7;ENSG00000167186|ENST00000321998|COQ7	ENST00000564746.1_1_16:19078986-19083491:+|nuORF	ENST00000564746.1_1_16:19078986-19083491:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	546.2486572265625	2	546.279323	1090.54409	-0.7198	-0.00039321	0.50723	0.00027709	-0.21257	-0.00011612	546.2794059862005	84.33	0.55617	84.33	83.989	84.545	0					16	10	2	0	0	0	0.60608	1	30799	30799		20.415	6.5085	1	1707400			36187	7165	26475	26688	35205	35205					0.002442937318846816
MTLGFFTCLR	10	Unmodified	_MTLGFFTCLR_					0	0	0			REV__nc|ENSG00000050628|P43115-2|PTGER3;REV__nc|ENSG00000050628|P43115-4|PTGER3	REV__nc|ENSG00000050628|P43115-2|PTGER3	MSMS	A375_MHC_IP_R1	1	594.7730712890625	2	594.798837	1187.58312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.072	1	82.072	81.572	82.572	0								0	0	0	0.15451	1	30002	30002		6.2058	0.9089	1		+		36188	27103;27104	26476	26689	35206	35206					-0.0031669723814502504
MTLIVNTMV	9	Unmodified	_MTLIVNTMV_					0	0	0			REV__nc|ENSG00000135124|Q99571-3|P2RX4	REV__nc|ENSG00000135124|Q99571-3|P2RX4	MULTI-MSMS	A375_MHC_IP_R2	2	511.1890563964844	2	511.274664	1020.53477	-0.70278	-0.00035931	-1.2773	-0.00065305	-1.9801	-0.0010124	511.2740069484949	126.05	0.76094	126.34	125.92	126.68	0.2951					17	14	2	0	0	0	0.11629	1	49336	49336		47.749	7.799	1	1812300	+		36189	18826	26477	26690	35207	35207					0.0253280912199898
MTLLLMNSV	9	Unmodified	_MTLLLMNSV_					0	0	0		PXDN|p.S891L|1|0.2|ENSG00000130508|chr2:1649108-1649108|G/A|missense_variant	PXDN|p.S891L|1|0.2|ENSG00000130508|chr2:1649108-1649108|G/A|missense_variant	PXDN|p.S891L|1|0.2|ENSG00000130508|chr2:1649108-1649108|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	511.1894836425781	2	511.274664	1020.53477	-0.70278	-0.00035931	-1.2773	-0.00065305	-1.9801	-0.0010124	511.2740069484949	126.05	0.76094	126.34	125.92	126.68	0.2951					17	14	2	0	0	0	0.27064	1	49297	49297		32.786	0	1	1812300			36190	15258	26478	26691	35208	35208					0.0253280912199898
MTLMLPFKI	9	Unmodified	_MTLMLPFKI_					0	0	0		nc|ENSG00000181631|Q9BPV8-2|P2RY13;ENSG00000181631|ENST00000325602|P2RY13	nc|ENSG00000181631|Q9BPV8-2|P2RY13	nc|ENSG00000181631|Q9BPV8-2|P2RY13	MULTI-SECPEP	A375_MHC_IP_R2	2	365.6101379394531	3	365.209791	1092.60755	0.099245	3.6245E-05	0.48394	0.00017674	0.58318	0.00021298	365.2099747672494	63.656	0.50901	64.396	64.088	64.597	0.74022					23	9	4	0	0	0	0.62767	1	24155	24155		11.495	4.393	1	2373300			36191	8355	26479	26692	35209	35209					0.064945629154181
MTLRKLLFF	9	Unmodified	_MTLRKLLFF_					0	0	0		ENST00000498406.1_1_22:21355751-21355970:-|nuORF	ENST00000498406.1_1_22:21355751-21355970:-|nuORF	ENST00000498406.1_1_22:21355751-21355970:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	390.6355895996094	3	390.235217	1167.68382	0.41304	0.00016118	-0.73496	-0.00028681	-0.32192	-0.00012563	390.23498509179166	107.9	0.76305	107.9	107.44	108.21	0					20	14	2	0	0	0	0.72761	1	39591	39591		4.5289	2.0304	1	1363000			36192	12759	26480	26693	35210	35210					0.10668702807060981
MTLRSTLSK	9	Unmodified	_MTLRSTLSK_					0	0	0		ENST00000487904.5_1_2:61408529-61412771:+|nuORF	ENST00000487904.5_1_2:61408529-61412771:+|nuORF	ENST00000487904.5_1_2:61408529-61412771:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1942138671875	2	518.794609	1035.57467	-1.1193	-0.0005807	0.033775	1.7522E-05	-1.0855	-0.00056317	518.7946560832593	37.411	0.56194	38.182	37.917	38.479	0.7709					26	10	4	0	0	0	0.74412	1	13653	13653		14.838	9.5414	1	12431000			36193	12604	26481	26694	35211	35211					0.058300721169189273
MTMSAPSLTL	10	Unmodified	_MTMSAPSLTL_					0	0	0		ENST00000375734.6_1_2:151331438-151331486:-|nuORF	ENST00000375734.6_1_2:151331438-151331486:-|nuORF	ENST00000375734.6_1_2:151331438-151331486:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	526.686767578125	2	526.261753	1050.50895	-0.44182	-0.00023251	4.3165	0.0022716	3.8747	0.0020391	526.7670008523667	57.237	0.45905	57.237	57.007	57.467	0					9	8	2	0	0	0	0.62155	1	20582	20582		19.257	0	1	817480			36194	11275	26482	26695	35212	35212					-0.014280851202784106
MTNEQELSEY	10	Unmodified	_MTNEQELSEY_					0	0	0			REV__ENST00000478275.1_1_1:212860135-212870482:-|nuORF	REV__ENST00000478275.1_1_1:212860135-212870482:-|nuORF	MSMS	A375_MHC_IP_R2	2	622.1934204101562	2	622.260993	1242.50743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.823	1	78.566	78.066	79.066	0.74293								0	0	0	0.15435	1	29551	29551		6.7232	0.51738	1		+		36195	18258	26483	26696	35213	35213					-0.10412047675345093
MTNKTLSH	8	Unmodified	_MTNKTLSH_					0	0	0		ENSG00000110723|ENST00000265843|EXPH5;nc|ENSG00000110723|Q8NEV8-2|EXPH5	ENSG00000110723|ENST00000265843|EXPH5	ENSG00000110723|ENST00000265843|EXPH5	MULTI-MSMS	A375_MHC_IP_R2	2	932.3255615234375	1	931.466577	930.459301	-0.16157	-0.0001505	1.775	0.0016534	1.6134	0.0015029	931.4698163310471	118.09	0.45477	118.7	118.54	119	0.60909					9	8	2	0	0	0	0.77562	1	44874	44874		10.824	2.9138	1	10074000			36196	2945	26484	26697	35214	35214					-0.008710320140835393
MTPEIIQKL	9	Oxidation (M)	_M(Oxidation (M))TPEIIQKL_		M(1)TPEIIQKL		M(42)TPEIIQKL	0	0	1		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-MSMS	A375_MHC_IP_R2	2	545.204345703125	2	544.804642	1087.59473	-0.7483	-0.00040768	-0.63176	-0.00034419	-1.3801	-0.00075186	544.8045673983713	63.573	0.56036	64.313	63.936	64.496	0.74022					22	10	3	0	0	0	0.14922	1	24096	24096		41.84	12.758	1	2421900			36197	2921	26485	26698	35215	35215		138			0.05443823056862129
MTPIALYFS	9	Unmodified	_MTPIALYFS_					0	0	0			REV__tr|U7SL96|U7SL96_FUSNUUndecaprenyl-diphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uppPPE=3SV=1	REV__tr|U7SL96|U7SL96_FUSNUUndecaprenyl-diphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uppPPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	522.6666259765625	2	521.767529	1041.5205	-0.56843	-0.00029659	1.0876	0.00056748	0.51919	0.0002709	521.7699997458838	58.467	0.81193	58.467	58.075	58.887	0					31	15	3	0	0	0	0.69674	1	20984	20984		7.2892	0	1	3829900	+		36198	28266	26486	26699	35216	35216					0.0014047996535282437
MTQERGNV	8	Unmodified	_MTQERGNV_					0	0	0			REV__CON__Q29RQ1	REV__CON__Q29RQ1	MSMS	A375_MHC_IP_R1	1	467.6386413574219	2	467.724184	933.433814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.104	1	93.104	92.604	93.604	0								0	0	0	0.16876	1	34221	34221		34.102	3.8776	1		+	+	36199	15877	26487	26700	35217	35217					-0.03556506536494908
MTQNLRPGSP	10	Unmodified	_MTQNLRPGSP_					0	0	0		REV3L|p.P1963L|1|0.05|ENSG00000009413|chr6:111367900-111367900|G/A|missense_variant	REV3L|p.P1963L|1|0.05|ENSG00000009413|chr6:111367900-111367900|G/A|missense_variant	REV3L|p.P1963L|1|0.05|ENSG00000009413|chr6:111367900-111367900|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	550.6170043945312	2	550.77949	1099.54443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.848	1	30.547	30.047	31.047	0.69872								0	0	0	0.15372	1	10455	10455		8.7454	0	1				36200	29064	26488	26701	35218	35218					-0.001362865482633424
MTQQITELT	9	Unmodified	_MTQQITELT_					0	0	0			REV__L1MDa_dup787|chr2:111343913-111344229:-|1.113196635366928|0.3438758665129249|1.69|470.0|5|2|sense	REV__L1MDa_dup787|chr2:111343913-111344229:-|1.113196635366928|0.3438758665129249|1.69|470.0|5|2|sense	MULTI-SECPEP	A375_MHC_IP_R2	2	532.1998901367188	2	532.768257	1063.52196	-0.77119	-0.00041087	3.1743	0.0016911	2.4031	0.0012803	532.7695006743439	80.629	0.25478	81.374	81.265	81.52	0.74474					5	4	2	0	0	0	0.47368	1	30606	30606		26.884	2.8631	1	887530	+		36201	26886	26489	26702	35219	35219					-0.007259307365529821
MTQQPRPVL	9	Unmodified	_MTQQPRPVL_					0	0	0		ENST00000557912.1_1_15:34634171-34635317:-|nuORF;ENSG00000182117|ENST00000328848|NOP10	ENST00000557912.1_1_15:34634171-34635317:-|nuORF	ENST00000557912.1_1_15:34634171-34635317:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	535.6945190429688	2	535.294776	1068.575	-1.0572	-0.00056592	0.51325	0.00027474	-0.54396	-0.00029118	535.2950445694588	38.308	0.40752	38.308	38.067	38.475	0					13	7	2	0	0	0	0.20451	1	12976	12976		34.932	24.858	1	5075800			36202	8376	26490	26703	35220	35220					0.043454918367842765
MTQQPRPVL	9	Unmodified	_MTQQPRPVL_					0	0	0		ENST00000557912.1_1_15:34634171-34635317:-|nuORF;ENSG00000182117|ENST00000328848|NOP10	ENST00000557912.1_1_15:34634171-34635317:-|nuORF	ENST00000557912.1_1_15:34634171-34635317:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	535.6941528320312	2	535.294776	1068.575	-1.203	-0.00064394	0.20702	0.00011082	-0.99595	-0.00053313	535.2948451440941	37.465	0.51071	38.236	37.968	38.479	0.7709					13	9	2	0	0	0	0.31606	1	13712	13712		47.749	31.902	1	6422000			36203	8376	26490	26703	35221	35221					0.043454918367842765
MTQQPRPVL	9	Oxidation (M)	_M(Oxidation (M))TQQPRPVL_		M(1)TQQPRPVL		M(89)TQQPRPVL	0	0	1		ENST00000557912.1_1_15:34634171-34635317:-|nuORF;ENSG00000182117|ENST00000328848|NOP10	ENST00000557912.1_1_15:34634171-34635317:-|nuORF	ENST00000557912.1_1_15:34634171-34635317:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	543.691650390625	2	543.292233	1084.56991	-0.79171	-0.00043013	-1.4243	-0.00077379	-2.216	-0.0012039	543.2921031645014	32.841	0.45346	32.841	32.485	32.938	0					25	8	4	0	0	0	0.036758	1	10663	10663		89.401	39.846	1	8240000			36204	8376	26490	26704	35222	35222		404			0.031011879741527082
MTQQPRPVL	9	Oxidation (M)	_M(Oxidation (M))TQQPRPVL_					0	0	1		ENST00000557912.1_1_15:34634171-34635317:-|nuORF;ENSG00000182117|ENST00000328848|NOP10	ENST00000557912.1_1_15:34634171-34635317:-|nuORF	ENST00000557912.1_1_15:34634171-34635317:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	543.292233	1084.56991	-0.8269	-0.00044925	-1.1802	-0.00064119	-2.0071	-0.0010904	543.2922836348575	32.036	0.40467	32.772	32.453	32.857	0.73691	-0.034074	0.00014706	NaN	89.401	20	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6065700			36205	8376	26490	26704				404			0.031011879741527082
MTSPSPSVDAD	11	Unmodified	_MTSPSPSVDAD_					0	0	0		ENSG00000276747|ENST00000619609|PADI6	ENSG00000276747|ENST00000619609|PADI6	ENSG00000276747|ENST00000619609|PADI6	MSMS	A375_MHC_IP_R1	1	553.6504516601562	2	553.737154	1105.45975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.587	1	34.587	34.087	35.087	0								0	0	0	0.15694	1	11416	11416		16.149	0	1				36206	10023	26491	26705	35223	35223					-0.08875701875535924
MTSRTLSKI	9	Unmodified	_MTSRTLSKI_					0	0	0			REV__ENST00000588073.1_1_17:42231773-42239297:+|nuORF	REV__ENST00000588073.1_1_17:42231773-42239297:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1945190429688	2	518.794609	1035.57467	-0.63372	-0.00032877	0.24827	0.0001288	-0.38544	-0.00019997	518.7947604331655	38.475	0.4613	38.475	38.268	38.73	0					18	8	3	0	0	0	0.74412	1	13053	13053		14.838	0.93222	1	10067000	+		36207	18334	26492	26706	35224	35224					0.058300721169189273
MTTFSRGE	8	Unmodified	_MTTFSRGE_					0	0	0			REV__ENST00000563518.5_1_15:41796196-41797203:-|nuORF	REV__ENST00000563518.5_1_15:41796196-41797203:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	465.114013671875	2	464.713285	927.412016	-0.17441	-8.105E-05	1.7298	0.00080385	1.5554	0.0007228	464.7138278412871	102.04	0.45694	102.04	101.8	102.25	0					11	8	2	0	0	0	0.73946	1	37523	37523		23.148	3.8914	1	928740	+		36208	26207	26493	26707	35225	35225					-0.0545931128506254
MTTLDSNNNTG	11	Unmodified	_MTTLDSNNNTG_					0	0	0		ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	MULTI-SECPEP	A375_MHC_IP_R2	2	583.7029418945312	2	584.25096	1166.48737	-0.459	-0.00026817	0.87425	0.00051078	0.41525	0.00024261	584.2512936245546	77.007	0.70783	77.749	77.354	78.062	0.74293					25	13	3	0	0	0	0.92455	1	29273	29273		21.537	6.2885	1	2122500			36209	4039	26494	26708	35226	35226					-0.08921798615324406
MTTLLGHDSF	10	Unmodified	_MTTLLGHDSF_					0	0	0			REV__ENST00000505994.1_1_4:120314876-120316112:-|nuORF	REV__ENST00000505994.1_1_4:120314876-120316112:-|nuORF	MSMS	A375_MHC_IP_R1	1	374.4335632324219	3	374.514708	1120.5223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.685	1	39.685	39.185	40.185	0								0	0	0	0.15451	1	13586	13586		3.3196	0.24738	1		+		36210	25544	26495	26709	35227	35227					-0.03314511016696997
MTTLTQNASL	10	Unmodified	_MTTLTQNASL_					0	0	0		ING3|p.S291L|1|0.29|ENSG00000071243|chr7:120969168-120969168|C/T|missense_variant	ING3|p.S291L|1|0.29|ENSG00000071243|chr7:120969168-120969168|C/T|missense_variant	ING3|p.S291L|1|0.29|ENSG00000071243|chr7:120969168-120969168|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	541.739990234375	2	540.273706	1078.53286	-0.091938	-4.9672E-05	-1.4845	-0.00080205	-1.5765	-0.00085172	540.2717743693698	44.98	0.80954	44.98	44.575	45.384	0					47	15	5	0	0	0	0.54492	1	15688	15688		24.991	0.97039	1	19623000			36211	14164	26496	26710	35228	35228					-0.003265283622795323
MTVFDSNSV	9	Unmodified	_MTVFDSNSV_					0	0	0			REV__nc|ENSG00000172752|A8TX70-2|COL6A5	REV__nc|ENSG00000172752|A8TX70-2|COL6A5	MSMS	A375_MHC_IP_R1	1	500.1849060058594	2	500.226225	998.437897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.24	1	41.24	40.74	41.74	0								0	0	0	0.14905	1	14228	14228		23.148	1.4018	1		+		36212	21167	26497	26711	35229	35229					-0.061384618334500374
MTVFSGLFVGG	11	Unmodified	_MTVFSGLFVGG_					0	0	0		nc|ENSG00000179915|Q9ULB1|NRXN1;nc|ENSG00000179915|Q9ULB1-2|NRXN1;ENSG00000179915|ENST00000401669|NRXN1;nc|ENSG00000179915|Q9ULB1-3|NRXN1	nc|ENSG00000179915|Q9ULB1|NRXN1	nc|ENSG00000179915|Q9ULB1|NRXN1	MULTI-MSMS	A375_MHC_IP_R1	1	558.2156982421875	2	557.78371	1113.55287	-0.34394	-0.00019185	-0.21921	-0.00012227	-0.56315	-0.00031412	557.7836094234802	106.48	0.66492	106.48	106.27	106.93	0					18	12	2	0	0	0	0.60747	1	39137	39137		22.736	2.3217	1	1153700			36213	8263	26498	26712	35230	35230					0.0006326736834125768
MTVVALIEEKM	11	Unmodified	_MTVVALIEEKM_					0	0	0			REV__ENST00000435711.5_2_2:178081475-178083842:+|nuORF	REV__ENST00000435711.5_2_2:178081475-178083842:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	632.3062133789062	2	632.337992	1262.66143	-0.52936	-0.00033474	2.9325	0.0018543	2.4031	0.0015196	632.8409184779731	105.53	0.45554	105.53	105.35	105.81	0					10	8	2	0	0	0	0.9754	1	38769	38769		17.113	9.5039	1	2312200	+		36214	24752	26499	26713	35231	35231					0.04060690556434565
MTWDWKEKY	9	Unmodified	_MTWDWKEKY_					0	0	0		tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	429.9336853027344	3	429.533991	1285.58014	-0.0065682	-2.8213E-06	-0.75132	-0.00032272	-0.75789	-0.00032554	429.5336806229794	20.612	0.35825	20.612	20.435	20.793	0					10	6	2	0	0	0	0.81166	1	5353	5353		1.0715	0	1	1622900			36215	29903	26500	26714	35232	35232					-0.05122249091255071
MTWDYADSM	9	Unmodified	_MTWDYADSM_					0	0	0			REV__PNP|p.R168W|1|0.54|ENSG00000198805|chr14:20475102-20475102|C/T|missense_variant	REV__PNP|p.R168W|1|0.54|ENSG00000198805|chr14:20475102-20475102|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	560.2190551757812	2	560.209718	1118.40488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.835	1	88.567	88.067	89.067	0.7318								0	0	0	0.15486	1	33415	33415		4.756	0	1		+		36216	27814	26501	26715	35233	35233					-0.14958411947804962
MTWKKIKERKK	11	Unmodified	_MTWKKIKERKK_					0	0	0		ENST00000399799.2_1_18:18608764-18608845:-|nuORF	ENST00000399799.2_1_18:18608764-18608845:-|nuORF	ENST00000399799.2_1_18:18608764-18608845:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	493.0343322753906	3	492.634151	1474.88062	-0.46091	-0.00022706	0.64368	0.0003171	0.18277	9.0038E-05	492.96889107180425	132.6	1.0692	132.79	132.15	133.22	0.18954					66	20	4	0	0	0	0.739	1	51996	51996		0.32927	0.23443	1	21729000			36217	11546	26502	26716	35234	35234					0.16217882629962332
MTWTQVECPF	10	Unmodified	_MTWTQVECPF_					0	0	0		ENSG00000198915|ENST00000395810|RASGEF1A;nc|ENSG00000198915|Q8N9B8-2|RASGEF1A	ENSG00000198915|ENST00000395810|RASGEF1A	ENSG00000198915|ENST00000395810|RASGEF1A	MULTI-MSMS	A375_MHC_IP_R1	1	621.2537231445312	2	621.270109	1240.52567	-0.67017	-0.00041636	0.12272	7.6239E-05	-0.54746	-0.00034012	621.2705350919634	90.973	1.0148	90.973	90.437	91.452	0					33	16	3	0	0	0	0.71245	1	33271	33271		6.7232	0	1	5270300			36218	9369	26503	26717	35235	35235					-0.08497584234351052
MVASQTHLV	9	Unmodified	_MVASQTHLV_					0	0	0			REV__nc|ENSG00000124496|Q96PN7|TRERF1	REV__nc|ENSG00000124496|Q96PN7|TRERF1	MULTI-SECPEP	A375_MHC_IP_R1	1	493.6600646972656	2	493.260402	984.506251	-0.15582	-7.6858E-05	-0.19592	-9.6639E-05	-0.35173	-0.0001735	493.2600752181565	35.539	0.76432	35.539	35.269	36.033	0					30	14	3	0	0	0	0.24548	1	11809	11809		52.268	18.166	1	7944100	+		36219	18309	26504	26718	35236	35236					0.013378275370655501
MVASQTHLV	9	Unmodified	_MVASQTHLV_					0	0	0			REV__nc|ENSG00000124496|Q96PN7|TRERF1	REV__nc|ENSG00000124496|Q96PN7|TRERF1	MULTI-SECPEP	A375_MHC_IP_R2	2	493.6600036621094	2	493.260402	984.506251	-0.70445	-0.00034748	-0.20678	-0.000102	-0.91123	-0.00044947	493.2603724912673	34.74	0.85855	35.504	35.223	36.081	0.76338					35	16	3	0	0	0	0.35487	1	12547	12547		43.858	13.222	1	11335000	+		36220	18309	26504	26718	35237	35237					0.013378275370655501
MVCSDCDDCE	10	Unmodified	_MVCSDCDDCE_					0	0	0			REV__nc|ENSG00000053747|Q16787-3|LAMA3	REV__nc|ENSG00000053747|Q16787-3|LAMA3	MSMS	A375_MHC_IP_R2	2	560.218994140625	2	560.15851	1118.30247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.598	1	52.35	51.85	52.85	0.75225								0	0	0	0.15642	1	19420	19420		0	0	1		+		36221	16399	26505	26719	35238	35238					-0.25195189073247093
MVDGTLLLL	9	Oxidation (M)	_M(Oxidation (M))VDGTLLLL_		M(1)VDGTLLLL		M(57)VDGTLLLL	0	0	1		ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-SECPEP	A375_MHC_IP_R1	1	990.9539184570312	1	990.553995	989.546719	0.09644	9.5529E-05	-0.16679	-0.00016521	-0.070348	-6.9683E-05	990.5538858489014	129.11	1.3222	129.11	128.84	130.16	0					38	25	4	0	0	0	0.10969	1	49735	49735		57.471	9.1255	1	33313000			36222	9462	26506	26720	35239	35239		436			0.051527491368574374
MVDIIEKLRIY	11	Unmodified	_MVDIIEKLRIY_					0	0	0		ENSG00000148483|ENST00000377495|TMEM236	ENSG00000148483|ENST00000377495|TMEM236	ENSG00000148483|ENST00000377495|TMEM236	MULTI-SECPEP	A375_MHC_IP_R2	2	696.7686767578125	2	696.899605	1391.78466	-0.65355	-0.00045546	0.17903	0.00012477	-0.47451	-0.00033069	696.8996138788576	132.27	1.4736	132.46	131.9	133.37	0.18953					80	28	5	0	0	0	0.99838	1	51969	51969		4.5289	1.5336	1	25217000			36223	5746	26507	26721	35240	35240					0.10443689999260641
MVDPLLTKY	9	Unmodified	_MVDPLLTKY_					0	0	0		nc|ENSG00000101452|Q9H5Z1-2|DHX35;ENSG00000101452|ENST00000252011|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	MULTI-MSMS	A375_MHC_IP_R1	1	540.693603515625	2	540.293911	1078.57327	-0.52453	-0.0002834	-0.30929	-0.00016711	-0.83382	-0.00045051	540.2937882161959	78.142	0.81245	78.142	77.844	78.657	0					31	15	3	0	0	0	0.04699	1	28519	28519		65.474	33.168	1	10471000			36224	2299	26508	26722	35241	35241					0.03712438028151155
MVDPLLTKY	9	Unmodified	_MVDPLLTKY_					0	0	0		nc|ENSG00000101452|Q9H5Z1-2|DHX35;ENSG00000101452|ENST00000252011|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	MULTI-SECPEP	A375_MHC_IP_R2	2	540.6932373046875	2	540.293911	1078.57327	-0.85212	-0.00046039	-0.31099	-0.00016802	-1.1631	-0.00062842	540.2938812646998	77.328	0.96458	78.071	77.555	78.52	0.74294					36	18	3	0	0	0	0.10495	1	29352	29352		74.2	45.118	1	11186000			36225	2299	26508	26722	35242	35242					0.03712438028151155
MVDPLLTKY	9	Oxidation (M)	_M(Oxidation (M))VDPLLTKY_		M(1)VDPLLTKY		M(57)VDPLLTKY	0	0	1		nc|ENSG00000101452|Q9H5Z1-2|DHX35;ENSG00000101452|ENST00000252011|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	MULTI-SECPEP	A375_MHC_IP_R1	1	548.6907348632812	2	548.291368	1094.56818	-0.51815	-0.0002841	-0.17741	-9.7271E-05	-0.69556	-0.00038137	548.2911789200485	63.71	0.6133	63.71	63.427	64.04	0					26	11	3	0	0	0	0.23313	1	23020	23020		57.249	33.229	1	9034100			36226	2299	26508	26723	35243	35243		96			0.024681341655195865
MVDPLLTKY	9	Oxidation (M)	_M(Oxidation (M))VDPLLTKY_		M(1)VDPLLTKY		M(81)VDPLLTKY	0	0	1		nc|ENSG00000101452|Q9H5Z1-2|DHX35;ENSG00000101452|ENST00000252011|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	MULTI-SECPEP	A375_MHC_IP_R2	2	548.690673828125	2	548.291368	1094.56818	-0.76158	-0.00041757	0.0066159	3.6274E-06	-0.75496	-0.00041394	548.2913891732462	62.917	0.70741	63.659	63.282	63.989	0.74263					31	13	3	0	0	0	0.076731	1	23814	23814		80.676	42.5	1	7929500			36227	2299	26508	26723	35244	35244		96			0.024681341655195865
MVDRERTV	8	Unmodified	_MVDRERTV_					0	0	0			REV__nc|ENSG00000140992|O15530-2|PDPK1	REV__nc|ENSG00000140992|O15530-2|PDPK1	MULTI-MSMS	A375_MHC_IP_R1	1	503.659912109375	2	503.260933	1004.50731	-0.46848	-0.00023577	-2.7221	-0.0013699	-3.1906	-0.0016057	503.25960607225625	65.185	0.45679	65.185	64.954	65.411	0					14	8	2	0	0	0	0.73946	1	23631	23631		23.148	1.4018	1	1078900	+		36228	19238	26509	26724	35245	35245					0.0052404190596462286
MVECYHLKK	9	Unmodified	_MVECYHLKK_					0	0	0		ENST00000422653.1_1_9:88371036-88385349:+|nuORF	ENST00000422653.1_1_9:88371036-88385349:+|nuORF	ENST00000422653.1_1_9:88371036-88385349:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	383.9190368652344	3	384.196434	1149.56747	-0.002378	-9.1363E-07	0.27444	0.00010544	0.27206	0.00010452	384.1965811841893	38.406	0.45901	38.406	38.118	38.577	0					12	8	2	0	0	0	0.75466	1	12965	12965		2.4985	0	1	1268100			36229	11748	26510	26725	35246	35246					-0.0013298375515660155
MVEIKQGDW	9	Unmodified	_MVEIKQGDW_					0	0	0		ENST00000373603.5_1_9:127114663-127114750:+|nuORF	ENST00000373603.5_1_9:127114663-127114750:+|nuORF	ENST00000373603.5_1_9:127114663-127114750:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	369.2806701660156	3	369.18307	1104.52738	0.23379	8.6312E-05	0.16795	6.2003E-05	0.40174	0.00014831	369.1829225314624	32.236	1.121	32.973	32.755	33.876	0.73691					28	21	3	0	0	0	0.77834	1	11505	11505		5.2969	3.4526	1	5894100			36230	11234	26511	26726	35247	35247					-0.020702071540654288
MVEWMVIGY	9	Unmodified	_MVEWMVIGY_					0	0	0			REV__ENST00000487222.5_1_7:100401085-100421908:-|nuORF;REV__nc|ENSG00000135333|Q15375-2|EPHA7;REV__nc|ENSG00000154928|P54762-5|EPHB1;REV__nc|ENSG00000116106|P54764-2|EPHA4	REV__nc|ENSG00000135333|Q15375-2|EPHA7	MULTI-MSMS	A375_MHC_IP_R2	2	564.7623901367188	2	564.266838	1126.51912	-0.38009	-0.00021447	-0.66883	-0.0003774	-1.0489	-0.00059187	564.2665638436353	87.298	2.132	88.031	86.592	88.724	0.733					91	41	5	0	0	0	0.64808	1	33058	33058		11.64	0	1	34601000	+		36231	22193;18843;19907;17936	26512	26727	35248	35248					-0.03907477395046044
MVFQLNESP	9	Unmodified	_MVFQLNESP_					0	0	0			REV__tr|U7SU71|U7SU71_FUSNUImidazolonepropionaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutIPE=3SV=1	REV__tr|U7SU71|U7SU71_FUSNUImidazolonepropionaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutIPE=3SV=1	MSMS	A375_MHC_IP_R1	1	532.6551513671875	2	532.757692	1063.50083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.56	1	106.56	106.06	107.06	0								0	0	0	0.14851	1	39112	39112		24.021	4.7636	1		+		36232	28536	26513	26728	35249	35249					-0.028378960454119806
MVGLTACLKAW	11	Unmodified	_MVGLTACLKAW_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	A375_MHC_IP_R2	2	398.6396789550781	3	398.212084	1191.61442	-0.13623	-5.4247E-05	-0.50948	-0.00020288	-0.64571	-0.00025713	398.21193637157336	27.951	0.35546	28.63	28.401	28.757	0.67857					11	6	2	0	0	0	0.73228	1	9529	9529		3.0723	0.22898	1	3256500			36233	4900	26514	26729	35250	35250					0.0262787579599717
MVKDPPDVLDR	11	Unmodified	_MVKDPPDVLDR_					0	0	0		ENSG00000056097|ENST00000265069|ZFR;ENST00000514356.5_1_5:32380105-32380342:-|nuORF;ENST00000510369.5_1_5:32355868-32383900:-|nuORF	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MSMS	A375_MHC_IP_R1	1	428.9433288574219	3	428.892067	1283.65437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.605	1	31.605	31.105	32.105	0								0	0	0	0.162	1	10132	10132		8.2864	0.34103	1				36234	1276	26515	26730	35251	35251					0.023890940002274874
MVLDIVQHW	9	Unmodified	_MVLDIVQHW_					0	0	0		ENSG00000133065|ENST00000367137|SLC41A1;ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000133065|ENST00000367137|SLC41A1	ENSG00000133065|ENST00000367137|SLC41A1	MULTI-SECPEP	A375_MHC_IP_R1	1	571.197021484375	2	570.797152	1139.57975	-0.10582	-6.0403E-05	-1.9013	-0.0010852	-2.0071	-0.0011456	570.7965672226259	110.11	0.71059	110.11	109.78	110.49	0					27	13	4	0	0	0	0.11436	1	40403	40403		68.081	43.871	1	1721000			36235	4481	26516	26731	35252	35252					0.015543759795491496
MVLLEIEVM	9	Unmodified	_MVLLEIEVM_					0	0	0		ENSG00000101306|ENST00000375985|MYLK2	ENSG00000101306|ENST00000375985|MYLK2	ENSG00000101306|ENST00000375985|MYLK2	MULTI-SECPEP	A375_MHC_IP_R1	1	539.1898193359375	2	538.790146	1075.56574	-0.66264	-0.00035702	0.55382	0.00029839	-0.10882	-5.863E-05	538.790194413164	25.28	0.45742	25.28	25.104	25.562	0					18	8	3	0	0	0	0.65246	1	7360	7360		10.824	0	1	7538600			36236	2278	26517	26732	35253	35253					0.030979624362089453
MVLLLLFIVI	10	Unmodified	_MVLLLLFIVI_					0	0	0		ENST00000491089.1_1_7:135330799-135333301:+|nuORF	ENST00000491089.1_1_7:135330799-135333301:+|nuORF	ENST00000491089.1_1_7:135330799-135333301:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	587.78662109375	2	587.387614	1172.76067	-0.63588	-0.00037351	-0.033032	-1.9402E-05	-0.66892	-0.00039291	587.3874612891794	149.69	1.7899	149.69	148.21	150	0					164	58	4	0	0	0	0.72747	2	56855	56855;57053		0	0	1	733580			36237	12654	26518	26733	35254;35255	35254					0.18120501303519632
MVLSELLPVS	10	Unmodified	_MVLSELLPVS_					0	0	0			REV__nc|ENSG00000174038|Q5VYM1-3|SPATA31G1	REV__nc|ENSG00000174038|Q5VYM1-3|SPATA31G1	MULTI-SECPEP	A375_MHC_IP_R2	2	544.6775512695312	2	544.307018	1086.59948	-0.82751	-0.00045042	-2.4804	-0.0013501	-3.308	-0.0018005	544.3045666836144	75.404	0.96696	76.144	75.775	76.742	0.74052					32	18	3	0	0	0	0.83086	1	28500	28500		10.824	4.1008	1	2116400	+		36238	21261	26519	26734	35256	35256					0.059647071996323575
MVLSTLVGVL	10	Unmodified	_MVLSTLVGVL_					0	0	0		chr8:10834775-10835234|155|13.01|0.0|12.09|-|0|TE_info:MIRb,MIRb_dup99017,MIR,SINE,donor,-,10835234,10835435|PINX1,None|5	chr8:10834775-10835234|155|13.01|0.0|12.09|-|0|TE_info:MIRb,MIRb_dup99017,MIR,SINE,donor,-,10835234,10835435|PINX1,None|5	chr8:10834775-10835234|155|13.01|0.0|12.09|-|0|TE_info:MIRb,MIRb_dup99017,MIR,SINE,donor,-,10835234,10835435|PINX1,None|5	MULTI-SECPEP	A375_MHC_IP_R1	1	516.6900024414062	2	516.312103	1030.60965	-0.74357	-0.00038391	1.19	0.0006144	0.44641	0.00023049	516.313155304853	85.715	0.25464	85.715	85.513	85.768	0					7	4	2	0	0	0	0.69172	1	31431	31431		25.399	0	1	548670			36239	504	26520	26735	35257	35257					0.09557314924882121
MVLTYHMW	8	Unmodified	_MVLTYHMW_					0	0	0		ENST00000523237.1_1_8:1721944-1728730:+|nuORF;ENSG00000182372|ENST00000331222|CLN8	ENST00000523237.1_1_8:1721944-1728730:+|nuORF	ENST00000523237.1_1_8:1721944-1728730:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	540.6788940429688	2	540.753898	1079.49324	-0.59881	-0.00032381	-0.028096	-1.5193E-05	-0.62691	-0.000339	540.7538827868325	52.202	0.66036	52.202	51.982	52.643	0					17	12	2	0	0	0	0.77488	1	18472	18472		13.508	2.3934	1	2884000			36240	8403	26521	26736	35258	35258					-0.0433232684667928
MVMTTIFF	8	Unmodified	_MVMTTIFF_					0	0	0			REV__ENSG00000101916|ENST00000218032|TLR8	REV__ENSG00000101916|ENST00000218032|TLR8	MULTI-MSMS	A375_MHC_IP_R1	1	495.64599609375	2	495.245375	988.476197	-0.34858	-0.00017263	0.59392	0.00029414	0.24533	0.0001215	495.245681595828	61.763	1.2277	61.763	61.483	62.711	0					72	23	5	0	0	0	0.77123	1	22492	22492		14.582	0	1	142800000	+		36241	17190	26522	26737	35259	35259					-0.018502474524780155
MVNKDDLPV	9	Unmodified	_MVNKDDLPV_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MSMS	A375_MHC_IP_R2	2	515.7169799804688	2	515.765517	1029.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.498	1	100.26	99.761	100.76	0.76278								0	0	0	0.1535	1	37742	37742		15.847	1.2655	1				36242	4421	26523	26738	35260	35260					0.002903904716276884
MVPEDVPRL	9	Unmodified	_MVPEDVPRL_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.P1556Afs*122|1|0.27|ENSG00000272333|chr19:35728865-35728866|-/A|frameshift_variant;KMT2B|p.G1602Rfs*76|1|0.53|ENSG00000272333|chr19:35729180-35729181|-/T|frameshift_variant	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MULTI-MSMS	A375_MHC_IP_R1	1	528.7174072265625	2	528.281334	1054.54812	-0.31293	-0.00016532	1.2742	0.00067315	0.96129	0.00050783	528.2820078712862	111.77	0.30567	111.77	111.57	111.87	0					7	5	2	0	0	0	0.4867	1	40963	40963		20.454	4.6064	1	481800			36243	9990	26524	26739	35261	35261					0.023023832256058085
MVPILLVLRK	10	Unmodified	_MVPILLVLRK_					0	0	0			REV__tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1	REV__tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1	MSMS	A375_MHC_IP_R2	2	591.392822265625	2	591.393762	1180.77297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.19	1	120.72	120.22	121.22	0.5321								0	0	0	0.15585	1	45829	45829		1.8442	1.3195	1		+		36244	28349	26525	26740	35262	35262					0.18981537766558176
MVQFLRNF	8	Unmodified	_MVQFLRNF_					0	0	0		ENST00000506586.1_1_5:93928514-93929327:+|nuORF	ENST00000506586.1_1_5:93928514-93929327:+|nuORF	ENST00000506586.1_1_5:93928514-93929327:+|nuORF	MSMS	A375_MHC_IP_R1	1	352.1020202636719	3	352.188267	1053.54297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.54	1	108.54	108.04	109.04	0								0	0	0	0.16876	1	39817	39817		3.9444	0	1				36245	12857	26526	26741	35263	35263					0.018341241536063535
MVRIQLPSLT	10	Unmodified	_MVRIQLPSLT_					0	0	0			REV__ENST00000561194.1_1_15:51669621-51676112:+|nuORF	REV__ENST00000561194.1_1_15:51669621-51676112:+|nuORF	MSMS	A375_MHC_IP_R2	2	386.62420654296875	3	386.561881	1156.66381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.074	1	64.815	64.315	65.315	0.74022								0	0	0	0.15435	1	24296	24296		3.5871	0	1		+		36246	25007	26527	26742	35264	35264					0.09174907076430827
MVRMHIETP	9	Unmodified	_MVRMHIETP_					0	0	0			REV__nc|ENSG00000147274|P38159-3|RBMX	REV__nc|ENSG00000147274|P38159-3|RBMX	MULTI-SECPEP	A375_MHC_IP_R2	2	372.2560729980469	3	371.8563	1112.54707	0.3728	0.00013863	-0.70603	-0.00026254	-0.33323	-0.00012391	371.8561546411854	39.419	0.5588	40.194	39.863	40.422	0.77451					25	10	3	0	0	0	0.7911	1	14539	14539		7.609	0	1	10094000	+		36247	27280	26528	26743	35265	35265					-0.004701544149611436
MVRSPTLSLLS	11	Unmodified	_MVRSPTLSLLS_					0	0	0			REV__ENSG00000100441|ENST00000553935|KHNYN	REV__ENSG00000100441|ENST00000553935|KHNYN	MSMS	A375_MHC_IP_R1	1	401.9525146484375	3	401.897041	1202.66929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.644	1	51.644	51.144	52.144	0								0	0	0	0.16203	1	18338	18338		6.6235	2.0946	1		+		36248	17093	26529	26744	35266	35266					0.0760658586827958
MVSKEVNSLKS	11	Unmodified	_MVSKEVNSLKS_					0	0	0		ENST00000525971.6_1_12:85431954-85518298:+|nuORF;ENSG00000133640|ENST00000393217|LRRIQ1;nc|ENSG00000133640|Q96JM4-2|LRRIQ1	ENST00000525971.6_1_12:85431954-85518298:+|nuORF	ENST00000525971.6_1_12:85431954-85518298:+|nuORF	MSMS	A375_MHC_IP_R2	2	611.3980102539062	2	611.329013	1220.64347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.038	1	85.774	85.274	86.274	0.73601								0	0	0	0.16265	1	32329	32329		4.897	0.56777	1				36249	4519	26530	26745	35267	35267					0.04197691625972766
MVSKEVNSLKS	11	Unmodified	_MVSKEVNSLKS_					0	0	0		ENST00000525971.6_1_12:85431954-85518298:+|nuORF;ENSG00000133640|ENST00000393217|LRRIQ1;nc|ENSG00000133640|Q96JM4-2|LRRIQ1	ENST00000525971.6_1_12:85431954-85518298:+|nuORF	ENST00000525971.6_1_12:85431954-85518298:+|nuORF	MSMS	A375_MHC_IP_R2	2	611.3394775390625	2	611.329013	1220.64347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.68	1	114.39	113.89	114.89	0.70985								0	0	0	0.16223	1	42859	42859		7.1017	0.47135	1				36250	4519	26530	26745	35268	35268					0.04197691625972766
MVSLVLTTTL	10	Unmodified	_MVSLVLTTTL_					0	0	0			REV__ENSG00000116209|ENST00000234831|TMEM59	REV__ENSG00000116209|ENST00000234831|TMEM59	MULTI-SECPEP	A375_MHC_IP_R1	1	539.6824951171875	2	539.314843	1076.61513	-0.60689	-0.0003273	0.49824	0.00026871	-0.10865	-5.8596E-05	539.8162421511172	102.48	0.55528	102.48	102.25	102.81	0					13	10	2	0	0	0	0.83086	1	37691	37691		15.847	0	1	1052800	+		36251	17947	26531	26746	35269	35269					0.07988993716662662
MVTLFFTPL	9	Unmodified	_MVTLFFTPL_					0	0	0			REV__ENSG00000197977|ENST00000354666|ELOVL2	REV__ENSG00000197977|ENST00000354666|ELOVL2	MSMS	A375_MHC_IP_R2	2	356.9206237792969	3	356.86479	1067.57254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.534	1	29.222	28.722	29.722	0.68832								0	0	0	0.15486	1	9863	9863		8.1555	1.5252	1		+		36252	22334	26532	26747	35270	35270					0.041456433790926894
MVVLIYSPPF	10	Unmodified	_MVVLIYSPPF_					0	0	0			REV__UGT2B28|p.P195L|1|0.35|ENSG00000135226|chr4:69281084-69281084|C/T|missense_variant	REV__UGT2B28|p.P195L|1|0.35|ENSG00000135226|chr4:69281084-69281084|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	388.5980224609375	3	389.215711	1164.6253	-0.4259	-0.00016577	-0.24438	-9.5117E-05	-0.67028	-0.00026088	389.5492779323474	18.951	0.23048	19.554	19.452	19.683	0.60308					6	4	2	0	0	0	0.93406	1	5801	5801		3.5871	0	1	3779900	+		36253	28945	26533	26748	35271	35271					0.049576014419017156
MVVTTLLTLS	10	Unmodified	_MVVTTLLTLS_					0	0	0			REV__CACNA2D4|p.A511V|1|0.62|ENSG00000151062|chr12:1879835-1879835|G/A|missense_variant	REV__CACNA2D4|p.A511V|1|0.62|ENSG00000151062|chr12:1879835-1879835|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	539.6421508789062	2	539.314843	1076.61513	-0.77509	-0.00041802	1.517	0.00081812	0.74188	0.00040011	539.3160284911801	101.69	0.60986	102.46	102.06	102.67	0.76428					13	11	2	0	0	0	0.90853	1	38408	38408		10.824	4.6181	1	794720	+		36254	15554	26534	26749	35272	35272					0.079889937166854
MVYDLFSY	8	Unmodified	_MVYDLFSY_					0	0	0			REV__ENST00000483495.5_1_20:34218821-34220289:-|nuORF	REV__ENST00000483495.5_1_20:34218821-34220289:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	519.1923217773438	2	519.236061	1036.45757	-1.2769	-0.00066302	1.4652	0.0007608	0.18832	9.7783E-05	519.236825776908	28.593	0.45331	29.292	29.08	29.534	0.69872					14	8	2	0	0	0	0.76248	1	9981	9981		16.942	4.4107	1	17462000	+		36255	22644	26535	26750	35273	35273					-0.059200858226859054
MWGSRSSTT	9	Unmodified	_MWGSRSSTT_					0	0	0		ENSG00000102452|ENST00000251127|NALCN;nc|ENSG00000102452|Q8IZF0-2|NALCN;ENST00000470333.1_1_13:101833448-102051507:-|nuORF;NALCN|p.I927Tfs*7|1|0.09|ENSG00000102452|chr13:101104406-101104407|-/TATGGATAGTT|frameshift_variant;ENST00000497170.5_1_13:101795259-101997694:-|nuORF	ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MULTI-SECPEP	A375_MHC_IP_R1	1	506.1412048339844	2	506.729466	1011.44438	-0.63173	-0.00032012	0.85492	0.00043321	0.22319	0.00011309	506.7298648778231	41.173	0.91529	41.173	40.913	41.828	0					35	17	3	0	0	0	0.50702	1	14133	14133		32.305	15.363	1	5693800			36256	2380	26536	26751	35274	35274					-0.0608852388206742
MWICLVSI	8	Carbamidomethyl (C)	_MWIC(Carbamidomethyl (C))LVSI_	MWIC(1)LVSI		MWIC(40)LVSI		0	1	0			REV__APOL1|p.V9I|1|0.43|ENSG00000100342|chr22:36254980-36254980|G/A|missense_variant	REV__APOL1|p.V9I|1|0.43|ENSG00000100342|chr22:36254980-36254980|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	511.705322265625	2	511.264099	1020.51364	-0.55133	-0.00028187	-0.30124	-0.00015401	-0.85256	-0.00043589	511.263726454688	89.965	0.75883	89.965	89.476	90.235	0					39	14	4	0	0	0	0.6817	2	33024	33024;33061		40.449	10.224	1	2418200	+		36257	15427	26537	26752	35275;35276	35275	68				0.00420843813128613
MWLARRRRRRW	11	Unmodified	_MWLARRRRRRW_					0	0	0			REV__ENST00000400913.5_1_1:6535562-6545948:-|nuORF	REV__ENST00000400913.5_1_1:6535562-6545948:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	411.98712158203125	4	411.491656	1641.93752	-0.18337	-7.5455E-05	-2.9498	-0.0012138	-3.1332	-0.0012893	411.7405240436006	41.284	0.71055	41.284	40.963	41.674	0					25	13	3	0	0	0	1.0014	1	14345	14345		0.50596	0.50596	1	6588900	+		36258	24406	26538	26753	35277	35277					0.1422278774971346
MWLFLKEY	8	Unmodified	_MWLFLKEY_					0	0	0			REV__ENSG00000109063|ENST00000583535|MYH3	REV__ENSG00000109063|ENST00000583535|MYH3	MULTI-SECPEP	A375_MHC_IP_R2	2	376.5739440917969	3	377.196539	1128.56779	-0.074804	-2.8216E-05	-0.43916	-0.00016565	-0.51396	-0.00019387	377.1963034616618	19.005	0.24981	19.608	19.483	19.733	0.60308					7	4	2	0	0	0	0.972	1	5836	5836		7.2892	2.7604	1	6405100	+		36259	17568	26539	26754	35278	35278					0.008647592363558942
MWLLLTTTCL	10	Unmodified	_MWLLLTTTCL_					0	0	0		ENSG00000204020|ENST00000404459|LIPN	ENSG00000204020|ENST00000404459|LIPN	ENSG00000204020|ENST00000404459|LIPN	MULTI-SECPEP	A375_MHC_IP_R1	1	398.3118591308594	3	398.880222	1193.61884	-0.070227	-2.8012E-05	-1.0333	-0.00041217	-1.1036	-0.00044019	398.8802892658788	43.434	0.91662	43.434	42.993	43.909	0					30	17	3	0	0	0	0.94044	1	15251	15251		3.8763	0	1	1578400			36260	9406	26540	26755	35279	35279					0.02977340218876634
MWLRLRRLF	9	Unmodified	_MWLRLRRLF_					0	0	0			REV__nc|ENSG00000008710|P98161-2|PKD1	REV__nc|ENSG00000008710|P98161-2|PKD1	MULTI-MSMS	A375_MHC_IP_R2	2	431.3243103027344	3	430.925377	1289.7543	-0.072427	-3.121E-05	-1.4174	-0.00061081	-1.4899	-0.00064202	430.92461206505783	136.05	0.25467	136.16	136.04	136.3	0.11134					8	4	2	0	0	0	0.77526	1	53491	53491		0.26902	0.062163	1	1271800	+		36261	16177	26541	26756	35280	35280					0.12101420915382732
MWLRLRRLF	9	Unmodified	_MWLRLRRLF_					0	0	0			REV__nc|ENSG00000008710|P98161-2|PKD1	REV__nc|ENSG00000008710|P98161-2|PKD1	MULTI-MATCH	A375_MHC_IP_R1	1		3	430.925377	1289.7543	-0.44494	-0.00019173	-1.1013	-0.00047459	-1.5463	-0.00066633	430.9248028460491	136.13	0.25455	136.13	136	136.25	0	-0.017861	6.5645E-05	NaN	0.26902	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	719250	+		36262	16177	26541	26756							0.12101420915382732
MWLRLRRLF	9	Unmodified	_MWLRLRRLF_					0	0	0			REV__nc|ENSG00000008710|P98161-2|PKD1	REV__nc|ENSG00000008710|P98161-2|PKD1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	430.925377	1289.7543	-0.072427	-3.121E-05	-1.4174	-0.00061081	-1.4899	-0.00064202	430.92461206505783	136.05	0.25467	136.16	136.04	136.3	0.11134	0.017861	-0.000343	NaN	0.26902	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1271800	+		36263	16177	26541	26756							0.12101420915382732
MWNHNDSL	8	Unmodified	_MWNHNDSL_					0	0	0		MUC5AC|p.D192N|1|0.18|ENSG00000215182|chr11:1162632-1162632|G/A|missense_variant	MUC5AC|p.D192N|1|0.18|ENSG00000215182|chr11:1162632-1162632|G/A|missense_variant	MUC5AC|p.D192N|1|0.18|ENSG00000215182|chr11:1162632-1162632|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	509.68914794921875	2	508.716359	1015.41816	-0.71176	-0.00036208	0.95844	0.00048757	0.24668	0.00012549	508.71672735526835	64.642	0.61152	65.383	65.054	65.666	0.74023					24	11	3	0	0	0	0.77603	1	24449	24449		9.3474	0	1	4130100			36264	14425	26542	26757	35281	35281					-0.08892793053553305
MWNNSKSPIRY	11	Unmodified	_MWNNSKSPIRY_					0	0	0		nc|ENSG00000008226|Q9Y238-2|DLEC1;ENSG00000008226|ENST00000308059|DLEC1;nc|ENSG00000008226|Q9Y238-3|DLEC1	nc|ENSG00000008226|Q9Y238-2|DLEC1	nc|ENSG00000008226|Q9Y238-2|DLEC1	MULTI-MSMS	A375_MHC_IP_R1	1	466.2999572753906	3	465.899445	1394.6765	-0.2368	-0.00011032	1.3928	0.00064892	1.156	0.00053859	465.9001522636583	34.809	0.30347	34.809	34.557	34.861	0					10	5	3	0	0	0	0.72713	1	11514	11514		11.631	2.1013	1	9973400			36265	955	26543	26758	35282	35282					-0.005046815313335173
MWQCCLYKYT	10	Unmodified	_MWQCCLYKYT_					0	0	0		ENST00000324052.10_2_4:113567999-113568038:+|nuORF	ENST00000324052.10_2_4:113567999-113568038:+|nuORF	ENST00000324052.10_2_4:113567999-113568038:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	447.0216064453125	3	446.860834	1337.56067	-0.6945	-0.00031034	1.6937	0.00075684	0.99919	0.0004465	446.86172725930413	33.379	0.50768	34.132	33.891	34.399	0.75225					13	9	2	0	0	0	0.94862	1	12007	12007		0.13989	0	1	1501400			36266	10713	26544	26759	35283	35283					-0.09460664698030996
MWQKISPF	8	Unmodified	_MWQKISPF_					0	0	0		ENST00000361138.6_1_9:72892257-72892326:+|nuORF	ENST00000361138.6_1_9:72892257-72892326:+|nuORF	ENST00000361138.6_1_9:72892257-72892326:+|nuORF	MSMS	A375_MHC_IP_R2	2	518.6948852539062	2	518.767863	1035.52117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.265	1	51.019	50.519	51.519	0.75406								0	0	0	0.16876	1	18903	18903		21.747	6.9084	1				36267	11037	26545	26760	35284	35284					0.004833194050434031
MWSSRIGVSL	10	Unmodified	_MWSSRIGVSL_					0	0	0			REV__ENST00000532042.5_1_11:65479717-65480742:+|nuORF	REV__ENST00000532042.5_1_11:65479717-65480742:+|nuORF	MSMS	A375_MHC_IP_R2	2	568.3631591796875	2	568.300059	1134.58556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.33	1	30.029	29.529	30.529	0.69872								0	0	0	0.15308	1	10232	10232		10.824	0.75	1		+		36268	25862	26546	26761	35285	35285					0.02365474491216446
MWWIRTDSWNR	11	Unmodified	_MWWIRTDSWNR_					0	0	0		ENST00000349714.9_1_20:33971865-33981976:-|nuORF;ENST00000438533.5_1_20:33971865-33981976:-|nuORF	ENST00000349714.9_1_20:33971865-33981976:-|nuORF	ENST00000349714.9_1_20:33971865-33981976:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	776.269287109375	2	775.869702	1549.72485	-0.8768	-0.00068029	1.6309	0.0012654	0.75409	0.00058507	775.870472656058	101.55	0.6599	102.32	102.01	102.67	0.76428					27	12	3	0	0	0	0.99424	1	38485	38485		8.1555	2.8586	1	2886700			36269	10922	26547	26762	35286	35286					-0.02802187891415997
MYCYFFTL	8	Unmodified	_MYCYFFTL_					0	0	0			REV__ENSG00000184986|ENST00000392519|TMEM121	REV__ENSG00000184986|ENST00000392519|TMEM121	MSMS	A375_MHC_IP_R1	1	544.2114868164062	2	544.235007	1086.45546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.213	1	80.213	79.713	80.713	0								0	0	0	0.16876	1	29288	29288		15.768	3.2367	1		+		36270	21852	26548	26763	35287	35287					-0.08430837832133875
MYEDELVP	8	Unmodified	_MYEDELVP_					0	0	0		nc|ENSG00000151962|Q8TBY0-2|RBM46;nc|ENSG00000151962|Q8TBY0-3|RBM46;ENSG00000151962|ENST00000281722|RBM46	nc|ENSG00000151962|Q8TBY0-2|RBM46	nc|ENSG00000151962|Q8TBY0-2|RBM46	MSMS	A375_MHC_IP_R1	1	498.17486572265625	2	498.223151	994.431749	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.09	1	134.09	133.59	134.59	0								0	0	0	0.16876	1	51711	51711		14.582	1.0738	1				36271	5938	26549	26764	35288	35288					-0.06568980064980678
MYEDELVP	8	Unmodified	_MYEDELVP_					0	0	0		nc|ENSG00000151962|Q8TBY0-2|RBM46;nc|ENSG00000151962|Q8TBY0-3|RBM46;ENSG00000151962|ENST00000281722|RBM46	nc|ENSG00000151962|Q8TBY0-2|RBM46	nc|ENSG00000151962|Q8TBY0-2|RBM46	MSMS	A375_MHC_IP_R2	2	498.1747131347656	2	498.223151	994.431749	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.97	1	134.13	133.63	134.63	0.16487								0	0	0	0.16876	1	52704	52704		14.582	1.0738	1				36272	5938	26549	26764	35289	35289					-0.06568980064980678
MYIVTNQY	8	Unmodified	_MYIVTNQY_					0	0	0			REV__ENSG00000212128|ENST00000390677|TAS2R13	REV__ENSG00000212128|ENST00000390677|TAS2R13	MULTI-MSMS	A375_MHC_IP_R1	1	516.1456909179688	2	516.24696	1030.47937	-0.48542	-0.00025059	0.50243	0.00025938	0.017017	8.7847E-06	516.2471661162118	43.61	0.50884	43.61	43.4	43.909	0					17	9	3	0	0	0	0.74945	1	15224	15224		20.454	3.5113	1	2709400	+		36273	22605	26550	26765	35290	35290					-0.03465281074136328
MYKCAAYNPV	10	Unmodified	_MYKCAAYNPV_					0	0	0		nc|ENSG00000144857|Q9BWV1|BOC;ENSG00000144857|ENST00000682979|BOC;ENST00000466059.5_1_3:112989541-112990141:+|nuORF;ENST00000471963.6_1_3:112968649-112990141:+|nuORF	nc|ENSG00000144857|Q9BWV1|BOC	nc|ENSG00000144857|Q9BWV1|BOC	MULTI-MSMS	A375_MHC_IP_R1	1	580.6680908203125	2	580.26737	1158.52019	0.15499	8.9934E-05	0.4289	0.00024888	0.58389	0.00033881	580.2676107652452	112.66	1.0147	112.66	112.28	113.29	0					31	19	2	0	0	0	0.69306	1	41315	41315		13.906	13.906	1	3377900			36274	5523	26551	26766	35291	35291					-0.05273263026174391
MYKCAAYNPV	10	Unmodified	_MYKCAAYNPV_					0	0	0		nc|ENSG00000144857|Q9BWV1|BOC;ENSG00000144857|ENST00000682979|BOC;ENST00000466059.5_1_3:112989541-112990141:+|nuORF;ENST00000471963.6_1_3:112968649-112990141:+|nuORF	nc|ENSG00000144857|Q9BWV1|BOC	nc|ENSG00000144857|Q9BWV1|BOC	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	580.26737	1158.52019	0.15499	8.9934E-05	0.4289	0.00024888	0.58389	0.00033881	580.2676107652452	112.66	1.0147	112.66	112.28	113.29	0	0.0057072	-7.4811E-05	NaN	13.906	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3377900			36275	5523	26551	26766							-0.05273263026174391
MYKIAVYY	8	Unmodified	_MYKIAVYY_					0	0	0			REV__ENST00000479290.5_1_19:39380134-39380626:-|nuORF	REV__ENST00000479290.5_1_19:39380134-39380626:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	526.1950073242188	2	525.770071	1049.52559	-0.42214	-0.00022195	-2.1704	-0.0011411	-2.5925	-0.0013631	525.7689633183339	55.764	0.30709	55.764	55.584	55.891	0					7	5	2	0	0	0	0.93416	1	19989	19989		14.582	1.0738	1	1283900	+		36276	25229	26552	26767	35292	35292					0.0028078382797502854
MYLFLSNLS	9	Unmodified	_MYLFLSNLS_					0	0	0		ENSG00000180016|ENST00000322608|OR1E1;ENSG00000186881|ENST00000334726|OR13F1	ENSG00000180016|ENST00000322608|OR1E1	ENSG00000180016|ENST00000322608|OR1E1	MULTI-SECPEP	A375_MHC_IP_R1	1	544.7105102539062	2	544.27826	1086.54197	-0.48699	-0.00026506	-0.23468	-0.00012773	-0.72167	-0.00039279	544.2778513683294	56	0.86417	56	55.533	56.397	0					26	16	2	0	0	0	0.39388	1	19988	19988		25.399	2.663	1	1181800			36277	8273	26553	26768	35293	35293					0.0021586499406112125
MYMTGKGKTCW	11	Unmodified	_MYMTGKGKTCW_					0	0	0		ENST00000522695.5_1_8:74332630-74332726:-|nuORF	ENST00000522695.5_1_8:74332630-74332726:-|nuORF	ENST00000522695.5_1_8:74332630-74332726:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	653.692626953125	2	653.293062	1304.57157	-0.6291	-0.00041099	-0.69991	-0.00045725	-1.329	-0.00086824	653.2928343052022	43.635	0.3526	44.404	44.177	44.53	0.7691					16	6	3	0	0	0	0.73494	1	16275	16275		4.1895	0.59301	1	2916000			36278	13029	26554	26769	35294	35294					-0.06853262323738818
MYTMSHYYD	9	Unmodified	_MYTMSHYYD_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	A375_MHC_IP_R2	2	605.684326171875	2	605.730817	1209.44708	-0.26193	-0.00015866	-1.2939	-0.00078376	-1.5558	-0.00094242	605.7300931988024	110.49	0.61331	111.22	110.83	111.45	0.73692					19	11	3	0	0	0	0.6898	1	41581	41581		7.9102	2.6133	1	1910900			36279	5837	26555	26770	35295	35295					-0.14926436539440147
MYYEGTEDP	9	Unmodified	_MYYEGTEDP_					0	0	0			REV__ENST00000464779.1_1_6:170117898-170118989:-|nuORF	REV__ENST00000464779.1_1_6:170117898-170118989:-|nuORF	MSMS	A375_MHC_IP_R1	1	552.671875	2	552.713147	1103.41174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.006	1	33.006	32.506	33.506	0								0	0	0	0.15486	1	10722	10722		11.64	0.81637	1		+		36280	18515	26556	26771	35296	35296					-0.1358277579558944
MYYKHLQSGR	10	Unmodified	_MYYKHLQSGR_					0	0	0			REV__ENSG00000241973|ENST00000255882|PI4KA	REV__ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	A375_MHC_IP_R2	2	428.61639404296875	3	428.216885	1281.62883	-0.54085	-0.0002316	1.2566	0.00053811	0.71578	0.00030651	428.21761706874594	22.406	0.66283	23.025	22.643	23.306	0.61932					17	12	2	0	0	0	0.94102	1	7141	7141		1.4551	0.44154	1	1484800	+		36281	22796	26557	26772	35297	35297					-0.0007233573153371253
NAAPFRSEV	9	Unmodified	_NAAPFRSEV_					0	0	0		nc|ENSG00000163938|Q9BVP2-2|GNL3;ENSG00000163938|ENST00000418458|GNL3	nc|ENSG00000163938|Q9BVP2-2|GNL3	nc|ENSG00000163938|Q9BVP2-2|GNL3	MULTI-MSMS	A375_MHC_IP_R2	2	496.15313720703125	2	495.753798	989.493044	-0.66158	-0.00032798	-0.64722	-0.00032086	-1.3088	-0.00064885	495.75369278398534	34.687	0.40468	35.45	35.273	35.677	0.76338					17	7	3	0	0	0	0.31062	1	12576	12576		29.841	0.759	1	2895900			36282	6749	26558	26773	35298	35298					-0.0021228725065611798
NAAPFRSEV	9	Unmodified	_NAAPFRSEV_					0	0	0		nc|ENSG00000163938|Q9BVP2-2|GNL3;ENSG00000163938|ENST00000418458|GNL3	nc|ENSG00000163938|Q9BVP2-2|GNL3	nc|ENSG00000163938|Q9BVP2-2|GNL3	MULTI-MATCH	A375_MHC_IP_R1	1		2	495.753798	989.493044	-0.20571	-0.00010198	-0.36205	-0.00017949	-0.56776	-0.00028147	495.7535649267912	35.497	0.45844	35.497	35.167	35.625	0	0.023611	0.00015473	NaN	29.841	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1541600			36283	6749	26558	26773							-0.0021228725065611798
NAAPFRSEV	9	Unmodified	_NAAPFRSEV_					0	0	0		nc|ENSG00000163938|Q9BVP2-2|GNL3;ENSG00000163938|ENST00000418458|GNL3	nc|ENSG00000163938|Q9BVP2-2|GNL3	nc|ENSG00000163938|Q9BVP2-2|GNL3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	495.753798	989.493044	-0.66158	-0.00032798	-0.64722	-0.00032086	-1.3088	-0.00064885	495.75369278398534	34.687	0.40468	35.45	35.273	35.677	0.76338	-0.023611	-0.00012802	NaN	29.841	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2895900			36284	6749	26558	26773							-0.0021228725065611798
NAAQPKASY	9	Unmodified	_NAAQPKASY_					0	0	0			REV__nc|ENSG00000156219|Q13508-2|ART3	REV__nc|ENSG00000156219|Q13508-2|ART3	MSMS	A375_MHC_IP_R1	1	475.1665344238281	2	475.240524	948.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.251	1	29.251	28.751	29.751	0								0	0	0	0.14631	1	9125	9125		27.629	9.4825	1		+		36285	19968	26559	26774	35299	35299					-0.009799761420026698
NAEQCSVLLKE	11	Unmodified	_NAEQCSVLLKE_					0	0	0			REV__nc|ENSG00000170927|P08F94-2|PKHD1	REV__nc|ENSG00000170927|P08F94-2|PKHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	412.5995788574219	3	411.876306	1232.60709	-0.023743	-9.7793E-06	-1.6935	-0.00069753	-1.7173	-0.00070731	412.2100554378648	19.394	0.28278	19.394	19.238	19.521	0					7	5	2	0	0	0	0.98673	1	4831	4831		5.5233	3.5958	1	2995200	+		36286	21034	26560	26775	35300	35300					8.814729244477348E-05
NAFFGSVI	8	Unmodified	_NAFFGSVI_					0	0	0			REV__nc|ENSG00000101452|Q9H5Z1-2|DHX35	REV__nc|ENSG00000101452|Q9H5Z1-2|DHX35	MULTI-MSMS	A375_MHC_IP_R1	1	854.4974975585938	1	854.44068	853.433404	-0.33035	-0.00028226	-0.18904	-0.00016152	-0.51938	-0.00044378	854.4403734045973	99.463	0.50618	99.463	99.268	99.774	0					12	9	2	0	0	0	0.68328	1	36611	36611		39.957	9.759	1	3232900	+		36287	17173	26561	26776	35301	35301					0.0008244180595511352
NAGEREISL	9	Unmodified	_NAGEREISL_					0	0	0		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	MULTI-MSMS	A375_MHC_IP_R1	1	495.65673828125	2	494.756538	987.498523	-0.39539	-0.00019562	-0.16629	-8.2272E-05	-0.56168	-0.00027789	494.75656319919784	37.685	1.0727	37.685	37.402	38.475	0					67	20	4	0	0	0	0.073067	1	12871	12871		55.503	3.8729	1	67694000			36288	2789	26562	26777	35302	35302					0.004273915411431517
NAHRIGVT	8	Unmodified	_NAHRIGVT_					0	0	0		CFAP52|p.F515Vfs*19|1|0.17|ENSG00000166596|chr17:9638676-9638677|-/A|frameshift_variant;nc|ENSG00000166596|Q8N1V2-3|CFAP52;ENSG00000166596|ENST00000352665|CFAP52;nc|ENSG00000166596|Q8N1V2-2|CFAP52;ENST00000576630.5_1_17:9487588-9546512:+|nuORF	CFAP52|p.F515Vfs*19|1|0.17|ENSG00000166596|chr17:9638676-9638677|-/A|frameshift_variant	CFAP52|p.F515Vfs*19|1|0.17|ENSG00000166596|chr17:9638676-9638677|-/A|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	434.6430969238281	2	434.243401	866.472249	-0.17925	-7.7838E-05	0.16532	7.1788E-05	-0.013931	-6.0494E-06	434.24339750099534	108.73	3.2105	109.48	108.4	111.61	0.74684					131	62	3	0	0	0	0.77797	1	40774	40774		2.3027	0	1	26795000			36289	368	26563	26778	35303	35303					0.03367167160331519
NAHSGVYTSC	10	Unmodified	_NAHSGVYTSC_					0	0	0			REV__nc|ENSG00000107679|Q9HB21-2|PLEKHA1	REV__nc|ENSG00000107679|Q9HB21-2|PLEKHA1	MSMS	A375_MHC_IP_R2	2	519.63623046875	2	519.719098	1037.42364	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.095	1	30.813	30.313	31.313	0.71857								0	0	0	0.15541	1	10558	10558		3.2813	1.2216	1		+		36290	27162	26564	26779	35304	35304					-0.09357114261729294
NAIHRRVE	8	Unmodified	_NAIHRRVE_					0	0	0		ENSG00000101493|ENST00000443185|ZNF516	ENSG00000101493|ENST00000443185|ZNF516	ENSG00000101493|ENST00000443185|ZNF516	MULTI-SECPEP	A375_MHC_IP_R1	1	497.64501953125	2	497.780682	993.546811	-0.59038	-0.00029388	0.15388	7.6597E-05	-0.4365	-0.00021728	497.78093199072447	86.35	0.45573	86.35	86.072	86.527	0					13	8	2	0	0	0	0.90224	1	31709	31709		26.341	16.267	1	1002600			36291	2305	26565	26780	35305	35305					0.04977929971710182
NAIHRRVE	8	Unmodified	_NAIHRRVE_					0	0	0		ENSG00000101493|ENST00000443185|ZNF516	ENSG00000101493|ENST00000443185|ZNF516	ENSG00000101493|ENST00000443185|ZNF516	MULTI-SECPEP	A375_MHC_IP_R2	2	497.6448974609375	2	497.780682	993.546811	-0.33863	-0.00016856	-1.0261	-0.00051075	-1.3647	-0.00067932	497.7802950331928	85.664	0.40661	86.4	86.085	86.492	0.73602					10	7	2	0	0	0	0.90224	1	32585	32585		26.341	26.341	1	694750			36292	2305	26565	26780	35306	35306					0.04977929971710182
NAILKENNK	9	Unmodified	_NAILKENNK_					0	0	0			REV__tr|U7SLQ0|U7SLQ0_FUSNUMultifunctionalfusionproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rphPE=3SV=1	REV__tr|U7SLQ0|U7SLQ0_FUSNUMultifunctionalfusionproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rphPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	522.695068359375	2	522.29583	1042.57711	-0.64997	-0.00033947	-0.67781	-0.00035402	-1.3278	-0.00069349	522.2954268377691	128.74	0.65903	128.98	128.6	129.26	0.23946					16	12	2	0	0	0	0.73804	1	50574	50574		3.5965	0	1	7794600	+		36293	28274	26566	26781	35307	35307					0.05752243846222882
NAKALIIQPI	10	Unmodified	_NAKALIIQPI_					0	0	0			REV__NEB|p.V4554Gfs*42|1|0.12|ENSG00000183091|chr2:151562738-151562739|-/CC|frameshift_variant	REV__NEB|p.V4554Gfs*42|1|0.12|ENSG00000183091|chr2:151562738-151562739|-/CC|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	541.2415771484375	2	540.842416	1079.67028	-0.90814	-0.00049116	0.12794	6.9194E-05	-0.78021	-0.00042197	540.8423035936886	106.82	0.55801	107.58	107.29	107.85	0.75977					18	10	2	0	0	0	0.50967	1	40358	40358		27.629	2.6378	1	1268800	+		36294	21736	26567	26782	35308	35308					0.13363168299497374
NAKDFFRVL	9	Unmodified	_NAKDFFRVL_					0	0	0		ENSG00000141562|ENST00000309794|NARF;nc|ENSG00000141562|Q9UHQ1-2|NARF;nc|ENSG00000141562|Q9UHQ1-4|NARF;NARF|p.S203Ffs*3|1|0.6|ENSG00000141562|chr17:82478887-82478887|C/-|frameshift_variant;ENST00000577812.5_1_17:80416679-80441656:+|nuORF;NARF|p.L82F|1|0.5|ENSG00000141562|chr17:82464422-82464422|C/T|missense_variant	ENSG00000141562|ENST00000309794|NARF	ENSG00000141562|ENST00000309794|NARF	MSMS	A375_MHC_IP_R1	1	370.5992126464844	3	370.541586	1108.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.303	1	76.303	75.803	76.803	0								0	0	0	0.15486	1	27811	27811		0.96228	0	1				36295	5256	26568	26783	35309	35309					0.05297138088508291
NAKDFFRVL	9	Unmodified	_NAKDFFRVL_					0	0	0		ENSG00000141562|ENST00000309794|NARF;nc|ENSG00000141562|Q9UHQ1-2|NARF;nc|ENSG00000141562|Q9UHQ1-4|NARF;NARF|p.S203Ffs*3|1|0.6|ENSG00000141562|chr17:82478887-82478887|C/-|frameshift_variant;ENST00000577812.5_1_17:80416679-80441656:+|nuORF;NARF|p.L82F|1|0.5|ENSG00000141562|chr17:82464422-82464422|C/T|missense_variant	ENSG00000141562|ENST00000309794|NARF	ENSG00000141562|ENST00000309794|NARF	MULTI-MSMS	A375_MHC_IP_R2	2	370.9415588378906	3	370.541586	1108.60293	0.30663	0.00011362	-0.37198	-0.00013783	-0.065347	-2.4214E-05	370.5414323762265	75.169	0.50541	75.906	75.621	76.126	0.73751					17	9	3	0	0	0	0.70886	1	28562	28562		3.8763	1.5936	1	1436000			36296	5256	26568	26783	35310	35310					0.05297138088508291
NAKGKILVL	9	Unmodified	_NAKGKILVL_					0	0	0		ENSG00000117222|ENST00000264515|RBBP5;nc|ENSG00000117222|Q15291-2|RBBP5;RBBP5|p.S203*|1|0.56|ENSG00000117222|chr1:205101624-205101624|G/-|frameshift_variant	ENSG00000117222|ENST00000264515|RBBP5	ENSG00000117222|ENST00000264515|RBBP5	MULTI-SECPEP	A375_MHC_IP_R1	1	478.7181091308594	2	478.318577	954.622602	-0.70786	-0.00033858	0.25974	0.00012424	-0.44813	-0.00021435	478.31857532744993	41.184	0.35464	41.184	41.013	41.368	0					12	6	3	0	0	0	0.60917	1	14241	14241		19.257	6.7254	1	2522900			36297	3464	26569	26784	35311	35311					0.14347514099279124
NAKNYFSKY	9	Unmodified	_NAKNYFSKY_					0	0	0		tr|U7T3K2|U7T3K2_FUSNUCelldivisionproteinFtsWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00694PE=4SV=1	tr|U7T3K2|U7T3K2_FUSNUCelldivisionproteinFtsWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00694PE=4SV=1	tr|U7T3K2|U7T3K2_FUSNUCelldivisionproteinFtsWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00694PE=4SV=1	MSMS	A375_MHC_IP_R1	1	567.72998046875	2	567.782556	1133.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.12	1	131.12	130.62	131.62	0								0	0	0	0.1535	1	50550	50550		15.847	0.5987	1				36298	29976	26570	26785	35312	35312					-0.01087445045095592
NAKYFGIISV	10	Unmodified	_NAKYFGIISV_					0	0	0			REV__NDST4|p.H165Y|1|0.19|ENSG00000138653|chr4:115076544-115076544|G/A|missense_variant	REV__NDST4|p.H165Y|1|0.19|ENSG00000138653|chr4:115076544-115076544|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	557.2621459960938	2	556.310949	1110.60735	-0.61307	-0.00034106	0.10521	5.853E-05	-0.50786	-0.00028253	556.3109767867143	110.36	1.2761	111.1	110.73	112.01	0.73692					53	24	4	0	0	0	0.39599	1	41577	41577		34.402	1.616	1	8479600	+		36299	27586	26571	26786	35313	35313					0.0564660251143323
NALEEHNF	8	Unmodified	_NALEEHNF_					0	0	0		ENST00000419037.5_1_7:99753435-99755466:-|nuORF;ENST00000498638.1_1_7:99753991-99754759:-|nuORF;ENSG00000146826|ENST00000316937|TRAPPC14	ENST00000419037.5_1_7:99753435-99755466:-|nuORF	ENST00000419037.5_1_7:99753435-99755466:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	487.2078857421875	2	487.222331	972.430109	-0.013812	-6.7297E-06	-0.1274	-6.2071E-05	-0.14121	-6.88E-05	487.2222072988622	38.736	0.50812	38.736	38.475	38.983	0					16	9	2	0	0	0	0.7754	1	13098	13098		11.64	11.64	1	6366300			36300	5637	26572	26787	35314	35314					-0.05720853038712903
NALEIASEIL	10	Unmodified	_NALEIASEIL_					0	0	0		nc|ENSG00000242515|Q9HAW8-2|UGT1A10;nc|ENSG00000242366|Q9HAW9-2|UGT1A8;nc|ENSG00000241119|O60656-2|UGT1A9;ENSG00000242515|ENST00000344644|UGT1A10;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000241119|ENST00000354728|UGT1A9	nc|ENSG00000242515|Q9HAW8-2|UGT1A10	nc|ENSG00000242515|Q9HAW8-2|UGT1A10	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1973876953125	2	536.797872	1071.58119	-0.9936	-0.00053336	0.14127	7.5831E-05	-0.85234	-0.00045753	536.7978324739323	55.767	0.66132	56.517	56.186	56.847	0.75015					30	12	3	0	0	0	0.328	1	21092	21092		49.554	11.379	1	11527000			36301	9781	26573	26788	35315	35315					0.04826288549293167
NALLEEFRL	9	Unmodified	_NALLEEFRL_					0	0	0			REV__ENST00000496324.5_1_1:155642327-155650230:-|nuORF	REV__ENST00000496324.5_1_1:155642327-155650230:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	369.2806091308594	3	368.873113	1103.59751	0.28092	0.00010363	0.29421	0.00010853	0.57513	0.00021215	368.87316242652344	33.4	0.45737	33.4	33.241	33.698	0					13	8	3	0	0	0	0.80332	1	10846	10846		4.897	2.3985	1	2172000	+		36302	20353	26574	26789	35316	35316					0.04985414506040797
NAMAKVQIFE	10	Unmodified	_NAMAKVQIFE_					0	0	0		ENSG00000085415|ENST00000399892|SEH1L;nc|ENSG00000085415|Q96EE3|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	MULTI-SECPEP	A375_MHC_IP_R2	2	384.92779541015625	3	384.202353	1149.58523	-0.4344	-0.0001669	-0.398	-0.00015291	-0.8324	-0.00031981	384.20218720220697	24.403	0.81213	25.046	24.602	25.414	0.64368					20	15	2	0	0	0	0.90513	1	7892	7892		10.899	6.183	1	6587700			36303	1811	26575	26790	35317	35317					0.01642054771355106
NANEMFRIF	9	Oxidation (M)	_NANEM(Oxidation (M))FRIF_		NANEM(1)FRIF		NANEM(53)FRIF	0	0	1		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R1	1	579.6735229492188	2	579.274041	1156.53353	-0.045529	-2.6374E-05	-0.64659	-0.00037455	-0.69212	-0.00040093	579.2736372428323	78.436	0.60561	78.436	78.15	78.756	0					20	11	3	0	0	0	0.084766	1	28643	28643		53.404	38.566	1	4721800			36304	9114	26576	26791	35318	35318		418			-0.03847688922564885
NANEMFRIF	9	Oxidation (M)	_NANEM(Oxidation (M))FRIF_		NANEM(1)FRIF		NANEM(46)FRIF	0	0	1		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	A375_MHC_IP_R1	1	579.6737060546875	2	579.274041	1156.53353	-0.11752	-6.8076E-05	-0.41725	-0.0002417	-0.53477	-0.00030978	579.2737921401501	78.01	0.51157	78.01	77.639	78.15	0					21	9	3	0	0	0	0.36673	1	28440	28440		45.74	32.697	1	4351800			36305	9114	26576	26791	35319	35319		418			-0.03847688922564885
NANEMFRIF	9	Oxidation (M)	_NANEM(Oxidation (M))FRIF_		NANEM(1)FRIF		NANEM(89)FRIF	0	0	1		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R2	2	579.6734619140625	2	579.274041	1156.53353	-0.2546	-0.00014748	-0.34499	-0.00019984	-0.59959	-0.00034733	579.2736084785025	77.054	0.80962	77.797	77.252	78.062	0.74293					30	15	3	0	0	0	0.015356	1	29275	29275		89.401	62.517	1	4600100			36306	9114	26576	26791	35320	35320		418			-0.03847688922564885
NANEMFRIF	9	Unmodified	_NANEMFRIF_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R1	1	571.6766967773438	2	571.276583	1140.53861	-0.25226	-0.00014411	-0.40877	-0.00023352	-0.66102	-0.00037763	571.2764873675385	100.49	0.65941	100.49	100.18	100.84	0					37	12	4	0	0	0	0.0098085	1	36890	36890		114.2	114.2	1	7754000			36307	9114	26576	26792	35321	35321					-0.026033850599333164
NANEMFRIF	9	Unmodified	_NANEMFRIF_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	A375_MHC_IP_R2	2	571.1683349609375	2	571.276583	1140.53861	-0.039084	-2.2328E-05	-0.63896	-0.00036502	-0.67804	-0.00038735	571.2760904715843	99.637	0.81396	100.4	99.964	100.78	0.76278					40	15	4	0	0	0	0.011066	1	37732	37732		125.53	106.27	1	11312000			36308	9114	26576	26792	35322	35322					-0.026033850599333164
NAPAPPFL	8	Unmodified	_NAPAPPFL_					0	0	0			REV__ENST00000473156.5_1_19:55112802-55113006:+|nuORF	REV__ENST00000473156.5_1_19:55112802-55113006:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	413.6383972167969	2	413.726521	825.438489	0.20929	8.6588E-05	-0.055229	-2.285E-05	0.15406	6.3738E-05	413.72651762732903	94.199	0.45496	94.944	94.616	95.071	0.74474					10	8	2	0	0	0	0.77702	1	35843	35843		5.7604	0	1	1151200	+		36309	25145	26577	26793	35323	35323					0.018787456685686266
NAPLCSAFL	9	Unmodified	_NAPLCSAFL_					0	0	0		ZNF488|p.T232A|1|0.29|ENSG00000265763|chr10:47368136-47368136|T/C|missense_variant	ZNF488|p.T232A|1|0.29|ENSG00000265763|chr10:47368136-47368136|T/C|missense_variant	ZNF488|p.T232A|1|0.29|ENSG00000265763|chr10:47368136-47368136|T/C|missense_variant	MSMS	A375_MHC_IP_R2	2	468.1633605957031	2	468.236396	934.458238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.28	1	126.57	126.07	127.07	0.2951								0	0	0	0.1535	1	49391	49391		15.847	6.4997	1				36310	30222	26578	26794	35324	35324					-0.011612463829806075
NARMPEKVTW	10	Unmodified	_NARMPEKVTW_					0	0	0		ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENSG00000108298|ENST00000225430|RPL19;ENST00000418154.1_1_1:64254543-64254969:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	411.6132507324219	3	411.213252	1230.61793	0.09225	3.7934E-05	-0.01549	-6.3696E-06	0.07676	3.1565E-05	411.54754159590084	39.401	0.35458	39.401	39.238	39.592	0					14	6	3	0	0	0	0.23565	1	13482	13482		45.603	45.603	1	4310500			36311	11882	26579	26795	35325	35325					0.011842618941955152
NARMPEKVTW	10	Unmodified	_NARMPEKVTW_					0	0	0		ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENSG00000108298|ENST00000225430|RPL19;ENST00000418154.1_1_1:64254543-64254969:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	411.6131896972656	3	411.213252	1230.61793	-0.35099	-0.00014433	-0.35185	-0.00014469	-0.70284	-0.00028902	411.2131889524265	38.536	0.50899	39.311	39.047	39.556	0.77451					15	9	2	0	0	0	0.36923	1	14226	14226		35.996	23.821	1	3468900			36312	11882	26579	26795	35326	35326					0.011842618941955152
NASPINRIV	9	Unmodified	_NASPINRIV_					0	0	0		nc|ENSG00000137776|Q9NWH9-3|SLTM;ENSG00000137776|ENST00000380516|SLTM	nc|ENSG00000137776|Q9NWH9-3|SLTM	nc|ENSG00000137776|Q9NWH9-3|SLTM	MULTI-MSMS	A375_MHC_IP_R1	1	492.68487548828125	2	492.285266	982.555979	-0.09573	-4.7126E-05	-0.47542	-0.00023404	-0.57115	-0.00028117	492.28500302419945	47.995	0.60646	47.995	47.668	48.274	0					29	11	3	0	0	0	0.018261	1	16878	16878		85.642	29.464	1	15501000			36313	4913	26580	26796	35327	35327					0.06400278537364557
NASPINRIV	9	Unmodified	_NASPINRIV_					0	0	0		nc|ENSG00000137776|Q9NWH9-3|SLTM;ENSG00000137776|ENST00000380516|SLTM	nc|ENSG00000137776|Q9NWH9-3|SLTM	nc|ENSG00000137776|Q9NWH9-3|SLTM	MULTI-MSMS	A375_MHC_IP_R2	2	492.68511962890625	2	492.285266	982.555979	-0.31661	-0.00015586	-0.18182	-8.9507E-05	-0.49843	-0.00024537	492.28518064360935	47.068	0.61124	47.829	47.563	48.174	0.76128					30	11	4	0	0	0	0.029064	1	17627	17627		75.761	28.012	1	13410000			36314	4913	26580	26796	35328	35328					0.06400278537364557
NATDLLRKM	9	Oxidation (M)	_NATDLLRKM(Oxidation (M))_		NATDLLRKM(1)		NATDLLRKM(57)	0	0	1		nc|ENSG00000155636|Q8IUH3|RBM45;ENSG00000155636|ENST00000286070|RBM45	nc|ENSG00000155636|Q8IUH3|RBM45	nc|ENSG00000155636|Q8IUH3|RBM45	MULTI-MSMS	A375_MHC_IP_R1	1	360.26214599609375	3	359.862219	1076.56483	-0.12047	-4.3353E-05	1.3985	0.00050328	1.2781	0.00045993	359.86270914969896	29.004	0.55776	29.004	28.745	29.302	0					27	10	3	0	0	0	0.068071	1	8988	8988		57.249	42.292	1	7459600			36315	6150	26581	26797	35329	35329		329			0.02960884111530504
NATDLLRKM	9	Oxidation (M)	_NATDLLRKM(Oxidation (M))_		NATDLLRKM(1)		NATDLLRKM(61)	0	0	1		nc|ENSG00000155636|Q8IUH3|RBM45;ENSG00000155636|ENST00000286070|RBM45	nc|ENSG00000155636|Q8IUH3|RBM45	nc|ENSG00000155636|Q8IUH3|RBM45	MULTI-MSMS	A375_MHC_IP_R1	1	539.6890869140625	2	539.289691	1076.56483	-0.87628	-0.00047257	1.3828	0.00074572	0.5065	0.00027315	539.2903687185404	29.008	0.4046	29.008	28.745	29.149	0					13	7	2	0	0	0	0.058226	1	8989	8989		61.09	32.595	1	3897400			36316	6150	26581	26797	35330	35330		329			0.02960884111530504
NATDLLRKM	9	Unmodified	_NATDLLRKM_					0	0	0		nc|ENSG00000155636|Q8IUH3|RBM45;ENSG00000155636|ENST00000286070|RBM45	nc|ENSG00000155636|Q8IUH3|RBM45	nc|ENSG00000155636|Q8IUH3|RBM45	MULTI-SECPEP	A375_MHC_IP_R1	1	531.70849609375	2	531.292233	1060.56991	-0.63689	-0.00033838	0.11484	6.1013E-05	-0.52206	-0.00027736	531.2922143921858	50.453	0.35809	50.453	50.254	50.613	0					8	6	2	0	0	0	0.48845	1	17862	17862		30.703	15.865	1	1383300			36317	6150	26581	26798	35331	35331					0.042051879741620724
NATDLLRKM	9	Unmodified	_NATDLLRKM_					0	0	0		nc|ENSG00000155636|Q8IUH3|RBM45;ENSG00000155636|ENST00000286070|RBM45	nc|ENSG00000155636|Q8IUH3|RBM45	nc|ENSG00000155636|Q8IUH3|RBM45	MULTI-SECPEP	A375_MHC_IP_R2	2	354.9305114746094	3	354.530581	1060.56991	-0.51568	-0.00018283	0.18602	6.5952E-05	-0.32966	-0.00011687	354.5306363701241	49.615	0.50536	50.373	50.046	50.551	0.75737					15	9	2	0	0	0	0.56537	1	18614	18614		16.566	9.9355	1	5321500			36318	6150	26581	26798	35332	35332					0.042051879741620724
NATGPRPAL	9	Unmodified	_NATGPRPAL_					0	0	0		nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;nc|ENSG00000087470|O00429-7|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	MULTI-SECPEP	A375_MHC_IP_R1	1	449.1509094238281	2	448.751059	895.487565	-0.31086	-0.0001395	0.61606	0.00027646	0.3052	0.00013696	448.7510490411649	28.098	0.45193	28.098	27.836	28.288	0					14	8	2	0	0	0	0.34746	1	8641	8641		38.176	16.429	1	3881300			36319	1874	26582	26799	35333	35333					0.03564033957513857
NATGPRPAL	9	Unmodified	_NATGPRPAL_					0	0	0		nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;nc|ENSG00000087470|O00429-7|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	MULTI-SECPEP	A375_MHC_IP_R2	2	449.15045166015625	2	448.751059	895.487565	-0.23859	-0.00010707	0.15164	6.805E-05	-0.086948	-3.9018E-05	448.75093959172904	27.394	0.40657	28.073	27.895	28.301	0.67857					10	7	2	0	0	0	0.087712	1	9383	9383		66.457	26.499	1	5047100			36320	1874	26582	26799	35334	35334					0.03564033957513857
NATGPSERPWL	11	Unmodified	_NATGPSERPWL_					0	0	0			REV__ENSG00000005238|ENST00000322813|ATOSB	REV__ENSG00000005238|ENST00000322813|ATOSB	MULTI-MSMS	A375_MHC_IP_R1	1	410.27545166015625	3	409.875405	1226.60439	-0.085867	-3.5195E-05	-0.11817	-4.8437E-05	-0.20404	-8.3631E-05	409.875433707038	31.224	0.70842	31.224	30.959	31.667	0					37	13	4	0	0	0	0.60848	1	9967	9967		14.171	2.5394	1	8397100	+		36321	16117	26583	26800	35335	35335					0.00014727386610502435
NATIRNVL	8	Unmodified	_NATIRNVL_					0	0	0		ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;ENST00000450651.5_1_22:21841260-21846319:-|nuORF;ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000290425|Q8N8J0|PI4KAP1	ENST00000467443.5_1_22:21831964-21846319:-|nuORF;ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	A375_MHC_IP_R1	1	451.1670227050781	2	450.766709	899.518865	0.42508	0.00019161	-0.65039	-0.00029318	-0.22532	-0.00010157	450.7663963191921	44.85	0.40488	44.85	44.575	44.98	0					13	7	3	0	0	0	0.80467	1	15684	15684		41.84	5.7126	1	2525000			36322	9791;12280	26584	26801	35336	35336					0.06508606991610577
NATKARIPF	9	Unmodified	_NATKARIPF_					0	0	0		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-SECPEP	A375_MHC_IP_R2	2	509.6732177734375	2	509.295633	1016.57671	-1.1398	-0.0005805	-0.56126	-0.00028585	-1.7011	-0.00086635	509.29548000789555	34.111	0.55622	34.863	34.45	35.006	0.75225					14	10	2	0	0	0	0.0575	1	12248	12248		76.825	42.722	1	6403200			36323	2227	26585	26802	35337	35337					0.06908868917025757
NATKLERVF	9	Unmodified	_NATKLERVF_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13;nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	A375_MHC_IP_R1	1	360.27313232421875	3	359.873224	1076.59784	-0.14742	-5.3053E-05	0.11287	4.0617E-05	-0.034557	-1.2436E-05	359.8732392747147	38.041	0.9693	38.041	37.71	38.679	0					40	18	3	0	0	0	0.052747	1	12847	12847		63.227	39.438	1	87109000			36324	6895	26586	26803	35338	35338					0.06260834225895451
NATKLERVF	9	Unmodified	_NATKLERVF_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13;nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	A375_MHC_IP_R2	2	539.7059936523438	2	539.306198	1076.59784	-1.4953	-0.0008064	1.1249	0.00060664	-0.3704	-0.00019976	539.3069098630455	37.037	1.1196	37.808	37.513	38.632	0.7709					40	20	4	0	0	0	0.0062394	1	13519	13519		192.32	116.56	1	33353000			36325	6895	26586	26803	35339	35339					0.06260834225895451
NATKLERVF	9	Unmodified	_NATKLERVF_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13;nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-SECPEP	A375_MHC_IP_R2	2	360.2731628417969	3	359.873224	1076.59784	-0.84745	-0.00030497	0.6741	0.00024259	-0.17334	-6.2382E-05	359.8734293290612	37.049	0.66014	37.82	37.615	38.275	0.7709					41	12	4	0	0	0	0.070665	1	13509	13509		63.227	44.506	1	79004000			36326	6895	26586	26803	35340	35340					0.06260834225895451
NATKTFREF	9	Unmodified	_NATKTFREF_					0	0	0		nc|ENSG00000143156|Q9Y5B8-2|NME7;ENSG00000143156|ENST00000367811|NME7	nc|ENSG00000143156|Q9Y5B8-2|NME7	nc|ENSG00000143156|Q9Y5B8-2|NME7	MULTI-SECPEP	A375_MHC_IP_R1	1	371.5809020996094	3	371.861096	1112.56146	-0.12167	-4.5244E-05	0.24568	9.136E-05	0.12401	4.6116E-05	371.8611547391906	29.428	0.45732	29.428	29.149	29.607	0					24	8	4	0	0	0	0.14572	1	9187	9187		35.612	21.394	1	387190000			36327	5350	26587	26804	35341	35341					0.009679573292032728
NATKTFREF	9	Unmodified	_NATKTFREF_					0	0	0		nc|ENSG00000143156|Q9Y5B8-2|NME7;ENSG00000143156|ENST00000367811|NME7	nc|ENSG00000143156|Q9Y5B8-2|NME7	nc|ENSG00000143156|Q9Y5B8-2|NME7	MULTI-SECPEP	A375_MHC_IP_R1	1	557.687744140625	2	557.288005	1112.56146	-0.98714	-0.00055012	0.33221	0.00018514	-0.65492	-0.00036498	557.2881506130333	29.428	0.40494	29.428	29.252	29.657	0					15	7	3	0	0	0	0.011204	1	9191	9191		104.48	58.744	1	145780000			36328	5350	26587	26804	35342	35342					0.009679573292032728
NATKTFREF	9	Unmodified	_NATKTFREF_					0	0	0		nc|ENSG00000143156|Q9Y5B8-2|NME7;ENSG00000143156|ENST00000367811|NME7	nc|ENSG00000143156|Q9Y5B8-2|NME7	nc|ENSG00000143156|Q9Y5B8-2|NME7	MULTI-SECPEP	A375_MHC_IP_R2	2	372.260986328125	3	371.861096	1112.56146	-0.12255	-4.5573E-05	-0.21214	-7.8888E-05	-0.3347	-0.00012446	371.8609808604721	28.61	0.40198	29.308	29.132	29.534	0.69872					23	7	4	0	0	0	0.11849	1	9884	9884		57.108	38.386	1	345350000			36329	5350	26587	26804	35343	35343					0.009679573292032728
NATKTFREF	9	Unmodified	_NATKTFREF_					0	0	0		nc|ENSG00000143156|Q9Y5B8-2|NME7;ENSG00000143156|ENST00000367811|NME7	nc|ENSG00000143156|Q9Y5B8-2|NME7	nc|ENSG00000143156|Q9Y5B8-2|NME7	MULTI-SECPEP	A375_MHC_IP_R2	2	557.6875	2	557.288005	1112.56146	-1.3291	-0.00074071	0.1991	0.00011096	-1.13	-0.00062976	557.2881155401176	28.61	0.25082	29.308	29.183	29.434	0.69872					11	4	3	0	0	0	0.29257	1	9902	9902		46.022	15.386	1	102760000			36330	5350	26587	26804	35344	35344					0.009679573292032728
NATPLAPSPN	10	Unmodified	_NATPLAPSPN_					0	0	0			REV__nc|ENSG00000056487|Q96EK2-4|PHF21B	REV__nc|ENSG00000056487|Q96EK2-4|PHF21B	MULTI-SECPEP	A375_MHC_IP_R1	1	491.17388916015625	2	491.253631	980.49271	-0.7004	-0.00034408	0.57651	0.00028321	-0.12389	-6.0863E-05	491.25382511093454	38.275	0.35575	38.275	38.016	38.371	0					10	6	2	0	0	0	0.66275	1	12861	12861		29.841	2.9569	1	977840	+		36331	16422	26588	26805	35345	35345					0.0016829302946916869
NATPTGRIL	9	Unmodified	_NATPTGRIL_					0	0	0		ENSG00000124574|ENST00000372530|ABCC10;nc|ENSG00000124574|Q5T3U5-2|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	MULTI-SECPEP	A375_MHC_IP_R1	1	472.40155029296875	2	471.771991	941.529429	-0.40928	-0.00019309	0.35263	0.00016636	-0.05665	-2.6726E-05	471.7721101722817	37.718	0.40732	37.718	37.505	37.913	0					12	7	2	0	0	0	0.49205	1	12718	12718		21.537	0	1	2414900			36332	3916	26589	26806	35346	35346					0.05632589646052111
NATPTGRIL	9	Unmodified	_NATPTGRIL_					0	0	0		ENSG00000124574|ENST00000372530|ABCC10;nc|ENSG00000124574|Q5T3U5-2|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	MULTI-MATCH	A375_MHC_IP_R2	2		2	471.771991	941.529429	-1.1387	-0.00053721	0.61985	0.00029243	-0.51886	-0.00024478	471.7723788759811	36.818	0.40759	37.589	37.359	37.767	0.7709	-0.064433	9.8959E-05	NaN	21.537	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2664900			36333	3916	26589	26806							0.05632589646052111
NATRYGVNAVY	11	Unmodified	_NATRYGVNAVY_					0	0	0		tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	614.708740234375	2	614.309469	1226.60439	-0.39732	-0.00024408	-0.55283	-0.00033961	-0.95015	-0.00058369	614.3090525455693	31.338	0.6584	31.338	31.009	31.667	0					19	12	2	0	0	0	0.33856	1	10007	10007		43.772	1.8168	1	3923800			36334	29814	26590	26807	35347	35347					0.00014727386610502435
NATWFCSA	8	Unmodified	_NATWFCSA_					0	0	0		ENST00000379278.3_1_6:13470666-13486268:-|nuORF	ENST00000379278.3_1_6:13470666-13486268:-|nuORF	ENST00000379278.3_1_6:13470666-13486268:-|nuORF	MSMS	A375_MHC_IP_R1	1	450.1127624511719	2	450.189445	898.364338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.629	1	81.629	81.129	82.129	0								0	0	0	0.16876	1	29833	29833		7.9102	1.187	1				36335	11329	26591	26808	35348	35348					-0.08890965485272773
NAVEGLRTL	9	Unmodified	_NAVEGLRTL_					0	0	0		ENST00000459908.5_1_13:113439469-113512287:+|nuORF;ATP11A|p.S1038Rfs*15|1|0.23|ENSG00000068650|chr13:112873622-112873622|G/-|frameshift_variant;ENSG00000068650|ENST00000375645|ATP11A	ENST00000459908.5_1_13:113439469-113512287:+|nuORF	ENST00000459908.5_1_13:113439469-113512287:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	487.1764831542969	2	486.777274	971.539994	-0.2744	-0.00013357	-0.98859	-0.00048122	-1.263	-0.0006148	486.7770382448294	50.586	0.71115	50.586	50.254	50.966	0					28	13	4	0	0	0	0.23226	1	17975	17975		35.612	7.9835	1	1829000			36336	202	26592	26809	35349	35349					0.05308572300486958
NAVEGLRTL	9	Unmodified	_NAVEGLRTL_					0	0	0		ENST00000459908.5_1_13:113439469-113512287:+|nuORF;ATP11A|p.S1038Rfs*15|1|0.23|ENSG00000068650|chr13:112873622-112873622|G/-|frameshift_variant;ENSG00000068650|ENST00000375645|ATP11A	ENST00000459908.5_1_13:113439469-113512287:+|nuORF	ENST00000459908.5_1_13:113439469-113512287:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	487.1766662597656	2	486.777274	971.539994	-0.86635	-0.00042172	-1.2395	-0.00060337	-2.1059	-0.0010251	486.7771464089276	49.745	0.86261	50.499	50.092	50.955	0.75406					36	16	3	0	0	0	0.29257	1	18719	18719		39.213	17.466	1	3473300			36337	202	26592	26809	35350	35350					0.05308572300486958
NAVEMCCAL	9	Unmodified	_NAVEMCCAL_					0	0	0			REV__ENST00000578759.1_1_17:60214444-60217453:-|nuORF	REV__ENST00000578759.1_1_17:60214444-60217453:-|nuORF	MSMS	A375_MHC_IP_R2	2	477.2312316894531	2	477.198099	952.381644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.249	1	50.006	49.506	50.506	0.75737								0	0	0	0.15283	1	18503	18503		16.942	5.302	1		+		36338	17025	26593	26810	35351	35351					-0.09645129266141339
NAVGQDTQEVI	11	Unmodified	_NAVGQDTQEVI_					0	0	0		ENST00000520579.5_1_5:149495328-149514444:-|nuORF;ENSG00000113721|ENST00000261799|PDGFRB	ENST00000520579.5_1_5:149495328-149514444:-|nuORF	ENST00000520579.5_1_5:149495328-149514444:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	587.6906127929688	2	587.290942	1172.56733	-0.59831	-0.00035138	-0.67458	-0.00039617	-1.2729	-0.00074755	587.290897581303	32.303	0.86526	33.039	32.755	33.62	0.73692					43	16	4	0	0	0	0.23666	1	11533	11533		51.63	5.9302	1	12904000			36339	3177	26594	26811	35352	35352					-0.012049889498030097
NAVPDGRIL	9	Unmodified	_NAVPDGRIL_					0	0	0		ENSG00000103888|ENST00000394685|CEMIP;nc|ENSG00000103888|Q8WUJ3-2|CEMIP	ENSG00000103888|ENST00000394685|CEMIP	ENSG00000103888|ENST00000394685|CEMIP	MULTI-SECPEP	A375_MHC_IP_R2	2	478.1717834472656	2	477.771991	953.529429	-0.68946	-0.0003294	0.11494	5.4914E-05	-0.57452	-0.00027449	477.7719879493087	49.009	0.71362	49.767	49.332	50.046	0.75737					33	13	3	0	0	0	0.38578	1	18346	18346		41.84	11.203	1	9322800			36340	2473	26595	26812	35353	35353					0.05080589646047429
NAYARLLEY	9	Unmodified	_NAYARLLEY_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;HECTD4|p.T2131Nfs*17|1|0.26|ENSG00000173064|chr12:112228151-112228152|-/G|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-5|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-SECPEP	A375_MHC_IP_R1	1	557.1900634765625	2	556.790381	1111.56621	-0.54967	-0.00030605	0.26211	0.00014594	-0.28756	-0.00016011	556.7904046194262	73.562	0.86096	73.562	73.285	74.146	0					39	16	4	0	0	0	0.019499	1	26768	26768		114.2	78.075	1	14304000			36341	7762	26596	26813	35354	35354					0.014888414719507637
NAYARLLEY	9	Unmodified	_NAYARLLEY_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;HECTD4|p.T2131Nfs*17|1|0.26|ENSG00000173064|chr12:112228151-112228152|-/G|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-5|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-SECPEP	A375_MHC_IP_R2	2	557.1900634765625	2	556.790381	1111.56621	-0.84028	-0.00046786	-0.018351	-1.0218E-05	-0.85863	-0.00047808	556.7902733105886	72.766	1.1176	73.501	72.872	73.99	0.7354					43	21	4	0	0	0	0.0085579	1	27621	27621		149.91	101.57	1	15240000			36342	7762	26596	26813	35355	35355					0.014888414719507637
NCDEEPTPV	9	Unmodified	_NCDEEPTPV_					0	0	0		OTOGL|p.D1904N|1|0.45|ENSG00000165899|chr12:80355915-80355915|G/A|missense_variant	OTOGL|p.D1904N|1|0.45|ENSG00000165899|chr12:80355915-80355915|G/A|missense_variant	OTOGL|p.D1904N|1|0.45|ENSG00000165899|chr12:80355915-80355915|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	501.69677734375	2	502.205489	1002.39643	-0.52809	-0.00026521	1.591	0.00079903	1.0629	0.00053382	502.70691782870676	91.299	0.60818	92.034	91.717	92.325	0.73451					18	11	2	0	0	0	0.68216	1	34697	34697		8.5933	0	1	651630			36343	15100	26597	26814	35356	35356					-0.10467642592777793
NCDSPKSPV	9	Unmodified	_NCDSPKSPV_					0	0	0			REV__ENST00000486117.1_1_2:100048385-100055261:-|nuORF	REV__ENST00000486117.1_1_2:100048385-100055261:-|nuORF	MSMS	A375_MHC_IP_R1	1	473.6842956542969	2	473.718567	945.422581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.469	1	45.469	44.969	45.969	0								0	0	0	0.15069	1	15912	15912		20.454	1.0146	1		+		36344	18901	26598	26815	35357	35357					-0.0523132863063438
NCKLELIEN	9	Unmodified	_NCKLELIEN_					0	0	0			REV__ENSG00000047410|ENST00000367478|TPR	REV__ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	A375_MHC_IP_R2	2	538.2489624023438	2	538.276249	1074.53795	-0.76783	-0.0004133	1.3953	0.00075104	0.62743	0.00033773	538.7786244494009	91.412	0.65778	92.147	91.514	92.172	0.7345					13	12	2	0	0	0	0.43945	1	34605	34605		23.79	0	1	1570400	+		36345	16360	26599	26816	35358	35358					0.0036577550035872264
NCLEQQVTF	9	Unmodified	_NCLEQQVTF_					0	0	0			REV__ENST00000603821.1_1_4:153244231-153244309:-|nuORF	REV__ENST00000603821.1_1_4:153244231-153244309:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	541.16943359375	2	541.252774	1080.491	-0.94127	-0.00050947	0.32367	0.00017518	-0.61761	-0.00033428	541.2538944696171	38.293	0.56246	38.293	37.964	38.526	0					15	10	2	0	0	0	0.53748	1	12971	12971		30.637	7.9003	1	1556600	+		36346	23390	26600	26817	35359	35359					-0.0460308405079104
NCMIISVCAE	10	Unmodified	_NCMIISVCAE_					0	0	0			REV__ENST00000547276.5_1_12:54678945-54679011:+|nuORF	REV__ENST00000547276.5_1_12:54678945-54679011:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	542.1375732421875	2	541.737588	1081.46062	-0.73517	-0.00039827	-0.208	-0.00011268	-0.94318	-0.00051095	541.7375836128158	79.542	0.5599	80.287	79.997	80.556	0.74473					15	10	2	0	0	0	0.69833	1	30173	30173		13.042	0.51092	1	1599200	+		36347	26008	26601	26818	35360	35360					-0.07684902031837737
NCQDSHWF	8	Unmodified	_NCQDSHWF_					0	0	0			REV__nc|ENSG00000073060|Q8WTV0-3|SCARB1	REV__nc|ENSG00000073060|Q8WTV0-3|SCARB1	MSMS	A375_MHC_IP_R2	2	518.6765747070312	2	518.700709	1035.38686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.434	1	50.191	49.691	50.691	0.75737								0	0	0	0.16876	1	18575	18575		2.8892	0.58649	1		+		36348	16616	26602	26819	35361	35361					-0.1294136608764802
NCRRLQCFPQP	11	Unmodified	_NCRRLQCFPQP_					0	0	0		nc|ENSG00000186204|Q9HCS2-2|CYP4F12;ENST00000451750.5_1_19:15783919-15791491:+|nuORF;ENSG00000186204|ENST00000550308|CYP4F12;ENSG00000171903|ENST00000402119|CYP4F11	nc|ENSG00000186204|Q9HCS2-2|CYP4F12	nc|ENSG00000186204|Q9HCS2-2|CYP4F12	MSMS	A375_MHC_IP_R2	2	681.3331298828125	2	681.331898	1360.64924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.65	1	120.18	119.68	120.68	0.5321								0	0	0	0.16258	1	45591	45591		5.2969	0.76802	1				36349	7657	26603	26820	35362	35362					-0.016654883433602663
NCTAALQSSVW	11	Unmodified	_NCTAALQSSVW_					0	0	0			REV__ENST00000529404.5_1_11:61643581-61643947:-|nuORF	REV__ENST00000529404.5_1_11:61643581-61643947:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	590.6751098632812	2	590.27678	1178.53901	-0.23923	-0.00014121	-2.1328	-0.0012589	-2.372	-0.0014001	590.2744402268393	51.143	0.71131	51.143	50.764	51.475	0					28	13	3	0	0	0	0.28899	1	18171	18171		47.594	13.193	1	3353600	+		36350	22697	26604	26821	35363	35363					-0.043120101307295045
NCVLNAGSQY	10	Unmodified	_NCVLNAGSQY_					0	0	0			REV__nc|ENSG00000126012|P41229-5|KDM5C	REV__nc|ENSG00000126012|P41229-5|KDM5C	MSMS	A375_MHC_IP_R1	1	534.6737060546875	2	534.742573	1067.47059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.93	1	107.93	107.43	108.43	0								0	0	0	0.15353	1	39599	39599		9.3831	2.0939	1		+		36351	27206	26605	26822	35364	35364					-0.06044254710604946
NDAGDHVTKL	10	Unmodified	_NDAGDHVTKL_					0	0	0		ENSG00000138792|ENST00000265162|ENPEP	ENSG00000138792|ENST00000265162|ENPEP	ENSG00000138792|ENST00000265162|ENPEP	MULTI-MSMS	A375_MHC_IP_R2	2	535.6978149414062	2	535.26727	1068.51999	-1.2219	-0.00065405	1.7485	0.00093592	0.52661	0.00028188	535.2680665139403	56.774	0.91572	57.524	56.847	57.763	0.75014					39	17	3	0	0	0	0.71361	1	21277	21277		6.2058	0	1	4374800			36352	5035	26606	26823	35365	35365					-0.01153223430151229
NDATQKQSL	9	Unmodified	_NDATQKQSL_					0	0	0			REV__ENSG00000204510|ENST00000697200|PRAMEF7	REV__ENSG00000204510|ENST00000697200|PRAMEF7	MULTI-SECPEP	A375_MHC_IP_R2	2	502.69464111328125	2	502.753995	1003.49344	-0.63603	-0.00031977	-3.8242	-0.0019227	-4.4603	-0.0022424	502.7510358442187	76.761	0.45412	77.502	77.301	77.755	0.74052					12	8	2	0	0	0	0.71341	1	29099	29099		13.042	9.0981	1	454420	+		36353	21685	26607	26824	35366	35366					-0.00816912321477048
NDAVFPEEQ	9	Unmodified	_NDAVFPEEQ_					0	0	0		nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2	nc|ENSG00000187627|P0DJD0|RGPD1	nc|ENSG00000187627|P0DJD0|RGPD1	MSMS	A375_MHC_IP_R2	2	524.6944580078125	2	524.732729	1047.4509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.435	1	97.191	96.691	97.691	0.75586								0	0	0	0.14851	1	36615	36615		24.021	10.115	1				36354	8657	26608	26825	35367	35367					-0.0709230744969318
NDCSCNCDMD	10	Unmodified	_NDCSCNCDMD_					0	0	0		ENSG00000242120|ENST00000567252|MDFIC2;nc|ENSG00000242120|A0A1B0GVS7-2|MDFIC2	ENSG00000242120|ENST00000567252|MDFIC2	ENSG00000242120|ENST00000567252|MDFIC2	MSMS	A375_MHC_IP_R2	2	560.180908203125	2	560.145934	1118.27732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.683	1	83.426	82.926	83.926	0.74293								0	0	0	0.15642	1	31411	31411		0	0	1				36355	9793	26609	26826	35368	35368					-0.27709243875801803
NDDDDDDDD	9	Unmodified	_NDDDDDDDD_					0	0	0		ENSG00000106344|ENST00000223073|RBM28;nc|ENSG00000106344|Q9NW13-2|RBM28;ENST00000488249.1_1_7:127975899-127977248:-|nuORF	ENSG00000106344|ENST00000223073|RBM28	ENSG00000106344|ENST00000223073|RBM28	MSMS	A375_MHC_IP_R1	1	527.137939453125	2	527.141795	1052.26904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.05	1	67.05	66.55	67.55	0								0	0	0	0.15486	1	24293	24293		0	0	1				36356	2684	26610	26827	35369	35369					-0.25500736723915907
NDDDDDDDDE	10	Unmodified	_NDDDDDDDDE_					0	0	0		ENSG00000106344|ENST00000223073|RBM28;nc|ENSG00000106344|Q9NW13-2|RBM28;ENST00000488249.1_1_7:127975899-127977248:-|nuORF	ENSG00000106344|ENST00000223073|RBM28	ENSG00000106344|ENST00000223073|RBM28	MSMS	A375_MHC_IP_R1	1	591.727783203125	2	591.663091	1181.31163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.207	1	89.207	88.707	89.707	0								0	0	0	0.15642	1	32768	32768		0	0	1				36357	2684	26611	26828	35370	35370					-0.2717738638634728
NDDNNLNSI	9	Unmodified	_NDDNNLNSI_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-3|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MSMS	A375_MHC_IP_R1	1	509.6773376464844	2	509.725435	1017.43632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.253	1	58.253	57.753	58.753	0								0	0	0	0.14905	1	20922	20922		23.148	6.2061	1				36358	4709	26612	26829	35371	35371					-0.07170379597857846
NDDNNLNSI	9	Unmodified	_NDDNNLNSI_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-3|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MSMS	A375_MHC_IP_R2	2	509.6767578125	2	509.725435	1017.43632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.303	1	58.052	57.552	58.552	0.74894								0	0	0	0.14905	1	21666	21666		23.148	6.2061	1				36359	4709	26612	26829	35372	35372					-0.07170379597857846
NDDNNLNSI	9	Unmodified	_NDDNNLNSI_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-3|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MSMS	A375_MHC_IP_R2	2	509.6768798828125	2	509.725435	1017.43632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.619	1	58.368	57.868	58.868	0.74894								0	0	0	0.14905	1	21789	21789		23.148	6.2061	1				36360	4709	26612	26829	35373	35373					-0.07170379597857846
NDDQLYLKQ	9	Unmodified	_NDDQLYLKQ_					0	0	0			REV__ENSG00000174145|ENST00000309447|NWD2	REV__ENSG00000174145|ENST00000309447|NWD2	MULTI-MSMS	A375_MHC_IP_R1	1	379.5469970703125	3	379.524261	1135.55095	0.23935	9.0839E-05	-1.0755	-0.00040817	-0.83614	-0.00031733	379.5240788236297	27.256	0.95915	27.256	27.027	27.987	0					31	18	3	0	0	0	0.52905	1	8385	8385		18.373	7.4741	1	2547300	+		36361	21268	26613	26830	35374	35374					-0.011400701159345772
NDDQLYLKQ	9	Unmodified	_NDDQLYLKQ_					0	0	0			REV__ENSG00000174145|ENST00000309447|NWD2	REV__ENSG00000174145|ENST00000309447|NWD2	MULTI-SECPEP	A375_MHC_IP_R1	1	378.9486389160156	3	379.524261	1135.55095	0.23935	9.0839E-05	-1.0755	-0.00040817	-0.83614	-0.00031733	379.5240788236297	27.256	0.95915	27.256	27.027	27.987	0					31	18	3	0	0	0	0.76106	1	8346	8346		9.544	5.3545	1	2547300	+		36362	21268	26613	26830	35375	35375					-0.011400701159345772
NDEIINPGI	9	Unmodified	_NDEIINPGI_					0	0	0		tr|U7SQX1|U7SQX1_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01612PE=4SV=1	tr|U7SQX1|U7SQX1_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01612PE=4SV=1	tr|U7SQX1|U7SQX1_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01612PE=4SV=1	MSMS	A375_MHC_IP_R1	1	492.6798400878906	2	492.753464	983.492375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.445	1	67.445	66.945	67.945	0								0	0	0	0.14767	1	24441	24441		25.399	0.72543	1				36363	29603	26614	26831	35376	35376					-3.126690376120678E-05
NDEKYKAVSI	10	Unmodified	_NDEKYKAVSI_					0	0	0		ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1;ENST00000491967.1_1_22:24135798-24143581:+|nuORF	ENSG00000099956|ENST00000644036|SMARCB1	ENSG00000099956|ENST00000644036|SMARCB1	MULTI-MSMS	A375_MHC_IP_R1	1	583.8781127929688	2	583.806228	1165.5979	0.015799	9.2238E-06	0.39409	0.00023007	0.40989	0.00023929	583.805924583297	92.631	0.91571	92.631	92.312	93.228	0					22	17	2	0	0	0	0.70496	1	34074	34074		10.074	0	1	2304800			36364	2096	26615	26832	35377	35377					0.02172789435235245
NDENLHSLY	9	Unmodified	_NDENLHSLY_					0	0	0			REV__ENSG00000176102|ENST00000323959|CSTF3	REV__ENSG00000176102|ENST00000323959|CSTF3	MULTI-SECPEP	A375_MHC_IP_R1	1	553.1749877929688	2	552.751453	1103.48835	-0.079398	-4.3887E-05	-1.734	-0.00095845	-1.8134	-0.0010023	552.7505602007976	48.839	0.45534	48.839	48.629	49.084	0					11	8	2	0	0	0	0.62767	1	17170	17170		23.148	19.867	1	1703100	+		36365	21385	26616	26833	35378	35378					-0.05925216184073179
NDESIQLDSNI	11	Unmodified	_NDESIQLDSNI_					0	0	0			REV__nc|ENSG00000188994|O60281-2|ZNF292	REV__nc|ENSG00000188994|O60281-2|ZNF292	MSMS	A375_MHC_IP_R2	2	416.4307861328125	3	416.529851	1246.56773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.735	1	42.509	42.009	43.009	0.77451								0	0	0	0.16258	1	15498	15498		2.4348	0	1		+		36366	22131	26617	26834	35379	35379					-0.04569614020579138
NDESTVNV	8	Unmodified	_NDESTVNV_					0	0	0			REV__ENST00000559764.2_1_15:88675272-88679265:-|nuORF	REV__ENST00000559764.2_1_15:88675272-88679265:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	439.5986633300781	2	439.198522	876.38249	-0.39829	-0.00017493	1.1363	0.00049907	0.73804	0.00032415	439.19879961137747	72.675	1.3238	73.41	73.073	74.396	0.73541					40	25	3	0	0	0	0.68964	1	27565	27565		37.974	3.8716	1	6424100	+		36367	19223	26618	26835	35380	35380					-0.0606455202955658
NDESTVNV	8	Unmodified	_NDESTVNV_					0	0	0			REV__ENST00000559764.2_1_15:88675272-88679265:-|nuORF	REV__ENST00000559764.2_1_15:88675272-88679265:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	439.198522	876.38249	-0.12748	-5.599E-05	1.6266	0.00071441	1.4991	0.00065842	439.19905639051143	73.425	0.60825	73.425	73.132	73.74	0	0.007298	7.3903E-05	NaN	37.974	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4418400	+		36368	19223	26618	26835							-0.0606455202955658
NDESTVNV	8	Unmodified	_NDESTVNV_					0	0	0			REV__ENST00000559764.2_1_15:88675272-88679265:-|nuORF	REV__ENST00000559764.2_1_15:88675272-88679265:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	439.198522	876.38249	-0.39829	-0.00017493	1.1363	0.00049907	0.73804	0.00032415	439.19879961137747	72.675	1.3238	73.41	73.073	74.396	0.73541	-0.007298	-0.00035678	NaN	37.974	40	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6424100	+		36369	19223	26618	26835							-0.0606455202955658
NDETLNEQAA	10	Unmodified	_NDETLNEQAA_					0	0	0			REV__ENST00000507916.6_1_4:90640987-90641107:+|nuORF	REV__ENST00000507916.6_1_4:90640987-90641107:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1105.386474609375	1	1104.48037	1103.4731	0.31182	0.0003444	2.0309	0.0022431	2.3427	0.0025875	1104.4818937826506	112.32	0.30359	113.05	112.87	113.17	0.72458					8	5	2	0	0	0	0.70334	1	42348	42348		10.8	2.644	1	2132000	+		36370	25573	26619	26836	35381	35381					-0.07450127771926418
NDFKPQDF	8	Unmodified	_NDFKPQDF_					0	0	0		nc|ENSG00000015532|Q9H1B5-2|XYLT2;ENSG00000015532|ENST00000017003|XYLT2;ENSG00000103489|ENST00000261381|XYLT1;XYLT1|p.P576L|1|0.39|ENSG00000103489|chr16:17138392-17138392|G/A|missense_variant	nc|ENSG00000015532|Q9H1B5-2|XYLT2;ENSG00000103489|ENST00000261381|XYLT1;XYLT1|p.P576L|1|0.39|ENSG00000103489|chr16:17138392-17138392|G/A|missense_variant	nc|ENSG00000015532|Q9H1B5-2|XYLT2	MSMS	A375_MHC_IP_R1	1	505.677001953125	2	505.732532	1009.45051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.462	1	83.462	82.962	83.962	0								0	0	0	0.16876	1	30541	30541		10.824	0.64053	1				36371	14456;2453;30175	26620	26837	35382	35382					-0.05383682378908361
NDFSMDTSDFN	11	Unmodified	_NDFSMDTSDFN_					0	0	0			REV__ENSG00000214212|ENST00000397820|C19orf38	REV__ENSG00000214212|ENST00000397820|C19orf38	MSMS	A375_MHC_IP_R1	1	646.7499389648438	2	646.740425	1291.4663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.828	1	92.828	92.328	93.328	0								0	0	0	0.16152	1	34120	34120		10.8	0.72558	1		+		36372	22647	26621	26838	35383	35383					-0.1677780871482355
NDFTGHLNFQ	10	Unmodified	_NDFTGHLNFQ_					0	0	0		nc|ENSG00000274150|A8MWK0|FADS2B	nc|ENSG00000274150|A8MWK0|FADS2B	nc|ENSG00000274150|A8MWK0|FADS2B	MULTI-MSMS	A375_MHC_IP_R1	1	398.1478576660156	3	398.184238	1191.53089	0.17948	7.1465E-05	-0.56305	-0.0002242	-0.38357	-0.00015273	398.1839579434353	45.409	0.30085	45.409	45.183	45.484	0					8	5	2	0	0	0	0.71944	1	15843	15843		1.7423	0.14999	1	1387500			36373	14938	26622	26839	35384	35384					-0.057218210558630744
NDFVTTHRVF	10	Unmodified	_NDFVTTHRVF_					0	0	0			REV__ENSG00000163975|ENST00000296350|MELTF	REV__ENSG00000163975|ENST00000296350|MELTF	MULTI-SECPEP	A375_MHC_IP_R2	2	412.58770751953125	3	412.543767	1234.60947	0.079298	3.2714E-05	2.4515	0.0010114	2.5308	0.0010441	412.87937416171843	27.374	0.45614	28.052	27.945	28.401	0.67857					13	8	2	0	0	0	0.91909	1	9438	9438		8.4443	2.2525	1	1411800	+		36374	20435	26623	26840	35385	35385					0.0015503124920996925
NDINLLPEGM	10	Unmodified	_NDINLLPEGM_					0	0	0			REV__tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1	REV__tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1	MSMS	A375_MHC_IP_R2	2	558.197998046875	2	558.273706	1114.53286	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.101	1	48.862	48.362	49.362	0.76128								0	0	0	0.12703	1	18056	18056		36.127	12.106	1		+		36375	28215	26624	26841	35386	35386					-0.0198252836228221
NDIRINILY	9	Unmodified	_NDIRINILY_					0	0	0		OR52B4|p.W199L|1|0.37|ENSG00000221996|chr11:4367700-4367700|C/A|missense_variant	OR52B4|p.W199L|1|0.37|ENSG00000221996|chr11:4367700-4367700|C/A|missense_variant	OR52B4|p.W199L|1|0.37|ENSG00000221996|chr11:4367700-4367700|C/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	378.9486389160156	3	378.548629	1132.62406	0.26421	0.00010002	0.0054952	2.0802E-06	0.26971	0.0001021	378.54862107077537	27.473	0.45447	27.473	27.28	27.735	0					15	8	2	0	0	0	0.69507	1	8346	8346		13.615	9.4254	1	3365100			36376	15087	26625	26842	35387	35387					0.06305103397380662
NDKALGLMC	9	Unmodified	_NDKALGLMC_					0	0	0		NPC1|p.L176M|1|0.24|ENSG00000141458|chr18:23561465-23561465|G/T|missense_variant	NPC1|p.L176M|1|0.24|ENSG00000141458|chr18:23561465-23561465|G/T|missense_variant	NPC1|p.L176M|1|0.24|ENSG00000141458|chr18:23561465-23561465|G/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	483.15777587890625	2	482.733163	963.451773	-0.60306	-0.00029111	1.4474	0.00069868	0.8443	0.00040757	482.7329199379042	41.786	1.3244	42.561	41.997	43.321	0.77451					31	25	2	0	0	0	0.4867	1	15377	15377		20.454	1.0146	1	5317700			36377	15019	26626	26843	35388	35388					-0.03141507606017058
NDKDRTYAVSY	11	Unmodified	_NDKDRTYAVSY_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	A375_MHC_IP_R1	1	444.9454345703125	3	444.545724	1330.61534	0.28986	0.00012886	-0.23495	-0.00010445	0.05491	2.441E-05	444.54535379880843	22.19	0.30556	22.19	22.062	22.368	0					9	5	3	0	0	0	0.73698	1	5940	5940		2.2527	0.16672	1	5643700			36378	4149	26627	26844	35389	35389					-0.03673915029753516
NDKLKKEIF	9	Unmodified	_NDKLKKEIF_					0	0	0		ENSG00000137831|ENST00000322954|UACA;nc|ENSG00000137831|Q9BZF9-2|UACA	ENSG00000137831|ENST00000322954|UACA	ENSG00000137831|ENST00000322954|UACA	MULTI-SECPEP	A375_MHC_IP_R2	2	379.60919189453125	3	378.888763	1133.64446	-0.1318	-4.9937E-05	0.42045	0.0001593	0.28865	0.00010937	378.888737677371	56.056	0.71547	56.806	56.54	57.255	0.75015					24	13	3	0	0	0	0.80332	1	21261	21261		0.96228	0.96228	1	1248200			36379	4925	26628	26845	35390	35390					0.08298274057187882
NDKLKKEIF	9	Unmodified	_NDKLKKEIF_					0	0	0		ENSG00000137831|ENST00000322954|UACA;nc|ENSG00000137831|Q9BZF9-2|UACA	ENSG00000137831|ENST00000322954|UACA	ENSG00000137831|ENST00000322954|UACA	MULTI-MATCH	A375_MHC_IP_R1	1		3	378.888763	1133.64446	0.40789	0.00015454	0.13247	5.0191E-05	0.54035	0.00020473	378.88874330914444	56.982	0.45776	56.982	56.753	57.211	0	0.08783	-0.00017604	NaN	0.96228	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1249600			36380	4925	26628	26845							0.08298274057187882
NDKRYLVLD	9	Unmodified	_NDKRYLVLD_					0	0	0		nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENSG00000113649|ENST00000679501|TCERG1;ENST00000549332.1_1_5:145889637-145890202:+|nuORF	nc|ENSG00000113649|O14776-2|TCERG1	nc|ENSG00000113649|O14776-2|TCERG1	MULTI-MSMS	A375_MHC_IP_R2	2	379.5469665527344	3	379.208384	1134.60332	-0.16365	-6.2056E-05	0.10993	4.1688E-05	-0.053712	-2.0368E-05	379.2084793988778	26.861	0.35876	27.52	27.313	27.671	0.65992					10	6	2	0	0	0	0.66474	1	9170	9170		10.151	2.2052	1	1047600			36381	3172	26629	26846	35391	35391					0.04140513017682679
NDLEADSSYY	10	Unmodified	_NDLEADSSYY_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;ENST00000479369.6_1_1:144864133-144875987:-|nuORF	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MSMS	A375_MHC_IP_R2	2	588.7301025390625	2	588.738208	1175.46186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.339	1	66.077	65.577	66.577	0.73811								0	0	0	0.1524	1	24772	24772		13.042	0.51092	1				36382	8133	26630	26847	35392	35392					-0.118849498660893
NDLEADSSYY	10	Unmodified	_NDLEADSSYY_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;ENST00000479369.6_1_1:144864133-144875987:-|nuORF	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MSMS	A375_MHC_IP_R2	2	588.70654296875	2	588.738208	1175.46186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.428	1	66.166	65.666	66.666	0.73811								0	0	0	0.15288	1	24805	24805		11.495	0.67078	1				36383	8133	26630	26847	35393	35393					-0.118849498660893
NDLLFLLVY	9	Unmodified	_NDLLFLLVY_					0	0	0			REV__ENST00000555284.1_1_14:81736911-81745120:-|nuORF	REV__ENST00000555284.1_1_14:81736911-81745120:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	555.148681640625	2	555.3157	1108.61685	-0.46622	-0.0002589	-2.8482	-0.0015816	-3.3144	-0.0018405	555.3137658211486	28.532	0.25347	28.532	28.39	28.643	0					6	4	2	0	0	0	0.78348	1	8791	8791		7.9102	0	1	1253500	+		36384	26096	26631	26848	35394	35394					0.06688370796950949
NDLLWQLHSN	10	Unmodified	_NDLLWQLHSN_					0	0	0			REV__ENSG00000080298|ENST00000617270|RFX3;REV__nc|ENSG00000080298|P48380-2|RFX3	REV__nc|ENSG00000080298|P48380-2|RFX3	MULTI-SECPEP	A375_MHC_IP_R1	1	414.2980651855469	3	413.875405	1238.60439	0.14948	6.1866E-05	1.7251	0.00071396	1.8745	0.00077582	413.87602035086	24.376	0.55503	24.376	24.194	24.749	0					16	10	2	0	0	0	0.92227	1	6851	6851		1.3296	1.2068	1	1891100	+		36385	16746;27122	26632	26849	35395	35395					-0.005372726133600736
NDLSKSGQPY	10	Unmodified	_NDLSKSGQPY_					0	0	0			REV__EEPD1|p.N482Y|1|0.17|ENSG00000122547|chr7:36297121-36297121|A/T|missense_variant	REV__EEPD1|p.N482Y|1|0.17|ENSG00000122547|chr7:36297121-36297121|A/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	555.2268676757812	2	554.767103	1107.51965	-0.72033	-0.00039962	-0.0036923	-2.0484E-06	-0.72402	-0.00040166	554.7671318721848	25.689	1.1673	25.689	25.306	26.474	0					68	22	5	0	0	0	0.66308	1	7855	7855		16.149	0.30192	1	235850000	+		36386	16064	26633	26850	35396	35396					-0.029806431499764585
NDNAPEHALR	10	Unmodified	_NDNAPEHALR_					0	0	0		ENSG00000109270|ENST00000499666|LAMTOR3	ENSG00000109270|ENST00000499666|LAMTOR3	ENSG00000109270|ENST00000499666|LAMTOR3	MULTI-MSMS	A375_MHC_IP_R1	1	379.1398620605469	3	379.519621	1135.53703	0.44773	0.00016992	1.6823	0.00063848	2.1301	0.00080841	379.5203040469657	42.349	0.3036	42.349	42.183	42.487	0					8	5	2	0	0	0	0.69833	1	14704	14704		7.9454	2.5427	1	1129200			36387	2862	26634	26851	35397	35397					-0.025313028243544977
NDNFYSSVTW	10	Unmodified	_NDNFYSSVTW_					0	0	0		FAM78A|p.P164S|1|0.76|ENSG00000126882|chr9:131261184-131261184|G/A|missense_variant	FAM78A|p.P164S|1|0.76|ENSG00000126882|chr9:131261184-131261184|G/A|missense_variant	FAM78A|p.P164S|1|0.76|ENSG00000126882|chr9:131261184-131261184|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	616.7249145507812	2	616.76456	1231.51457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.891	1	67.627	67.127	68.127	0.73631								0	0	0	0.1524	1	25341	25341		13.042	4.8869	1				36388	13976	26635	26852	35398	35398					-0.09192947012593322
NDNQDNENSGN	11	Unmodified	_NDNQDNENSGN_					0	0	0		OGFRL1|p.P439S|1|0.38|ENSG00000119900|chr6:71302008-71302008|C/T|missense_variant	OGFRL1|p.P439S|1|0.38|ENSG00000119900|chr6:71302008-71302008|C/T|missense_variant	OGFRL1|p.P439S|1|0.38|ENSG00000119900|chr6:71302008-71302008|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	610.6810302734375	2	610.724152	1219.43375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.343	1	93.343	92.843	93.843	0								0	0	0	0.16265	1	34311	34311		4.897	0.95262	1				36389	15048	26636	26853	35399	35399					-0.16718879793461383
NDQSCCFCWA	10	Unmodified	_NDQSCCFCWA_					0	0	0			REV__ENST00000415076.6_1_7:43688212-43769078:-|nuORF	REV__ENST00000415076.6_1_7:43688212-43769078:-|nuORF	MSMS	A375_MHC_IP_R1	1	588.6554565429688	2	588.698994	1175.38344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.225	1	46.225	45.725	46.725	0								0	0	0	0.15531	1	16207	16207		3.5965	1.2938	1		+		36390	24514	26637	26854	35400	35400					-0.19724120248179133
NDRIIVDY	8	Unmodified	_NDRIIVDY_					0	0	0		tr|U7SLG5|U7SLG5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01926PE=4SV=1	tr|U7SLG5|U7SLG5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01926PE=4SV=1	tr|U7SLG5|U7SLG5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01926PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	504.6607360839844	2	504.261456	1006.50836	-0.45797	-0.00023094	-0.73728	-0.00037178	-1.1952	-0.00060272	504.2610657896366	46.525	0.50615	46.525	46.395	46.901	0					20	9	3	0	0	0	0.69557	1	16329	16329		36.127	3.3413	1	7429100			36391	29502	26638	26855	35401	35401					0.005365795465081646
NDRYWEVLLNY	11	Unmodified	_NDRYWEVLLNY_					0	0	0			REV__tr|U7T0B4|U7T0B4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00933PE=4SV=1	REV__tr|U7T0B4|U7T0B4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00933PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	495.97674560546875	3	495.577136	1483.70958	-0.27578	-0.00013667	-0.55667	-0.00027587	-0.83245	-0.00041254	495.5769654664496	44.139	0.35925	44.139	43.959	44.318	0					10	6	2	0	0	0	0.73472	1	15414	15414		4.4062	4.4062	1	3555800	+		36392	28674	26639	26856	35402	35402					-0.01292776207606039
NDRYWEVLLNY	11	Unmodified	_NDRYWEVLLNY_					0	0	0			REV__tr|U7T0B4|U7T0B4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00933PE=4SV=1	REV__tr|U7T0B4|U7T0B4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00933PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		3	495.577136	1483.70958	-0.32433	-0.00016073	0.15372	7.6179E-05	-0.17061	-8.4553E-05	495.57717854589043	43.383	0.40612	44.155	43.977	44.383	0.7724	0.0084875	0.00079095	NaN	4.4062	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2008500	+		36393	28674	26639	26856							-0.01292776207606039
NDSMMTTDSY	10	Unmodified	_NDSMMTTDSY_					0	0	0			REV__AKAP4|p.D13N|1|0.85|ENSG00000147081|chrX:50198743-50198743|C/T|missense_variant	REV__AKAP4|p.D13N|1|0.85|ENSG00000147081|chrX:50198743-50198743|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	582.667724609375	2	582.712821	1163.41109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.94	1	101.71	101.21	102.21	0.76372								0	0	0	0.15435	1	38267	38267		6.7232	1.4925	1		+		36394	15349	26640	26857	35403	35403					-0.16407938506949904
NDTENHQPV	9	Unmodified	_NDTENHQPV_					0	0	0		nc|ENSG00000162086|Q96N20|ZNF75A;ENSG00000162086|ENST00000669516|ZNF75A	nc|ENSG00000162086|Q96N20|ZNF75A	nc|ENSG00000162086|Q96N20|ZNF75A	MULTI-SECPEP	A375_MHC_IP_R1	1	526.675048828125	2	527.233427	1052.4523	-0.65011	-0.00034276	0.68695	0.00036218	0.036843	1.9425E-05	527.2339528533386	27.76	0.4544	27.76	27.482	27.937	0					11	8	2	0	0	0	0.75466	1	8386	8386		7.9102	5.3327	1	1171200			36395	6506	26641	26858	35404	35404					-0.07182673360944136
NDTEPQFSV	9	Unmodified	_NDTEPQFSV_					0	0	0			REV__ENSG00000140326|ENST00000356231|CDAN1	REV__ENSG00000140326|ENST00000356231|CDAN1	MULTI-MSMS	A375_MHC_IP_R1	1	518.689208984375	2	518.732729	1035.4509	-0.55967	-0.00029032	-0.056622	-2.9371E-05	-0.6163	-0.00031969	518.7327103913171	58.09	0.86261	58.09	57.771	58.633	0					24	16	2	0	0	0	0.60101	1	21050	21050		14.838	3.198	1	1879700	+		36396	19204	26642	26859	35405	35405					-0.06540307449699867
NDTLEEEYDE	10	Unmodified	_NDTLEEEYDE_					0	0	0			REV__ENSG00000067191|ENST00000394303|CACNB1	REV__ENSG00000067191|ENST00000394303|CACNB1	MSMS	A375_MHC_IP_R2	2	628.6755981445312	2	628.743687	1255.47282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.057	1	93.796	93.296	94.296	0.73902								0	0	0	0.15353	1	35381	35381		9.3831	0.63772	1		+		36397	16529	26643	26860	35406	35406					-0.14469592282443955
NDTPTSFMM	9	Unmodified	_NDTPTSFMM_					0	0	0			REV__ENSG00000136021|ENST00000360820|SCYL2	REV__ENSG00000136021|ENST00000360820|SCYL2	MULTI-SECPEP	A375_MHC_IP_R2	2	1044.0540771484375	1	1043.41724	1042.40997	-0.25407	-0.0002651	-0.77687	-0.0008106	-1.0309	-0.0010757	1043.4162097295064	36.48	1.0669	37.251	36.901	37.968	0.7709					25	20	2	0	0	0	0.75466	1	13374	13374		7.9102	0	1	3333600	+		36398	18910	26644	26861	35407	35407					-0.10954108085184089
NDTTTQNSKF	10	Unmodified	_NDTTTQNSKF_					0	0	0			REV__nc|ENSG00000182973|Q9H9A5-4|CNOT10	REV__nc|ENSG00000182973|Q9H9A5-4|CNOT10	MULTI-SECPEP	A375_MHC_IP_R1	1	578.206787109375	2	578.267467	1154.52038	-0.26255	-0.00015182	0.028861	1.6689E-05	-0.23369	-0.00013514	578.2673436671244	27.433	0.96	27.433	27.128	28.088	0					50	18	4	0	0	0	0.90513	1	8615	8615		17.113	5.6182	1	64027000	+		36399	21723	26645	26862	35408	35408					-0.05069848500943408
NDTVFELQ	8	Unmodified	_NDTVFELQ_					0	0	0		nc|ENSG00000133863|Q9BXT5|TEX15;ENSG00000133863|ENST00000643185|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	MSMS	A375_MHC_IP_R2	2	483.158203125	2	483.232364	964.450176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.564	1	49.321	48.821	49.821	0.75737								0	0	0	0.16876	1	18237	18237		37.974	1.847	1				36400	4534	26646	26863	35409	35409					-0.03347102098746291
NDVDVLAVL	9	Unmodified	_NDVDVLAVL_					0	0	0			REV__ENST00000565539.5_1_16:57684180-57697491:+|nuORF	REV__ENST00000565539.5_1_16:57684180-57697491:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	478.6368713378906	2	479.266207	956.517862	-0.48807	-0.00023392	0.05327	2.553E-05	-0.4348	-0.00020838	479.26612547739376	98.583	0.40603	99.343	99.15	99.556	0.75977					10	7	2	0	0	0	0.60917	1	37451	37451		13.906	0	1	1124600	+		36401	22568	26647	26864	35410	35410					0.03786347832055981
NDYDCSMDD	9	Unmodified	_NDYDCSMDD_					0	0	0			REV__ENSG00000204381|ENST00000375614|LAYN	REV__ENSG00000204381|ENST00000375614|LAYN	MSMS	A375_MHC_IP_R2	2	539.1724243164062	2	539.160422	1076.30629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.578	1	79.323	78.823	79.823	0.74474								0	0	0	0.15486	1	29839	29839		1.6526	0.17072	1		+		36402	22510	26648	26865	35411	35411					-0.2288105998352421
NEAEFHKPDY	10	Unmodified	_NEAEFHKPDY_					0	0	0		nc|ENSG00000170921|Q9HCD6-4|TANC2;nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;nc|ENSG00000170921|Q9HCD6-3|TANC2;TANC1|p.G605R|1|0.31|ENSG00000115183|chr2:159176429-159176429|G/A|missense_variant;ENSG00000115183|ENST00000263635|TANC1;nc|ENSG00000115183|Q9C0D5-2|TANC1	nc|ENSG00000170921|Q9HCD6-4|TANC2;ENSG00000115183|ENST00000263635|TANC1	ENSG00000115183|ENST00000263635|TANC1	MULTI-SECPEP	A375_MHC_IP_R1	1	417.5877380371094	3	417.187649	1248.54112	-0.10927	-4.5588E-05	0.092978	3.8789E-05	-0.016297	-6.7989E-06	417.18762412345484	26.406	0.45524	26.406	26.221	26.677	0					19	8	3	0	0	0	0.81606	1	7895	7895		18.34	14.15	1	4870700			36403	3279;7560	26649	26866	35412	35412					-0.07321258121260144
NEAEFHKPDY	10	Unmodified	_NEAEFHKPDY_					0	0	0		nc|ENSG00000170921|Q9HCD6-4|TANC2;nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;nc|ENSG00000170921|Q9HCD6-3|TANC2;TANC1|p.G605R|1|0.31|ENSG00000115183|chr2:159176429-159176429|G/A|missense_variant;ENSG00000115183|ENST00000263635|TANC1;nc|ENSG00000115183|Q9C0D5-2|TANC1	nc|ENSG00000170921|Q9HCD6-4|TANC2;ENSG00000115183|ENST00000263635|TANC1	ENSG00000115183|ENST00000263635|TANC1	MULTI-SECPEP	A375_MHC_IP_R2	2	417.58734130859375	3	417.187649	1248.54112	-0.48388	-0.00020187	0.29238	0.00012198	-0.1915	-7.9892E-05	417.1876184718756	25.89	0.45823	26.55	26.347	26.805	0.65992					18	8	3	0	0	0	0.87697	1	8721	8721		18.34	11.716	1	4108800			36404	3279;7560	26649	26866	35413	35413					-0.07321258121260144
NEAERRRWW	9	Unmodified	_NEAERRRWW_					0	0	0			REV__tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	REV__tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	651.9811401367188	2	651.826152	1301.63775	-0.70175	-0.00045742	-0.34908	-0.00022754	-1.0508	-0.00068495	651.8259242123961	67.424	0.35734	67.424	67.143	67.5	0					8	6	2	0	0	0	0.8028	1	24360	24360		1.8442	1.3859	1	1197300	+		36405	28254	26650	26867	35414	35414					-0.0010022605083577218
NEAFGDTKF	9	Unmodified	_NEAFGDTKF_					0	0	0		nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000598355.1_1_19:59061017-59061917:+|nuORF	nc|ENSG00000130726|Q13263-2|TRIM28	nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-SECPEP	A375_MHC_IP_R1	1	515.1376342773438	2	514.737814	1027.46108	-0.28746	-0.00014797	-0.4188	-0.00021557	-0.70626	-0.00036354	514.737578524777	47.978	0.60712	47.978	47.718	48.325	0					24	11	3	0	0	0	0.054506	1	16890	16890		73.196	13.122	1	8537800			36406	4272	26651	26868	35415	35415					-0.051556997244460945
NEAFGDTKF	9	Unmodified	_NEAFGDTKF_					0	0	0		nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000598355.1_1_19:59061017-59061917:+|nuORF	nc|ENSG00000130726|Q13263-2|TRIM28	nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-MSMS	A375_MHC_IP_R2	2	515.1375732421875	2	514.737814	1027.46108	-0.57544	-0.0002962	-0.70827	-0.00036458	-1.2837	-0.00066078	514.7378082354164	47.235	0.56087	47.996	47.613	48.174	0.76128					28	10	4	0	0	0	0.026372	1	17671	17671		78.06	17.987	1	13130000			36407	4272	26651	26868	35416	35416					-0.051556997244460945
NEAGEVSKHF	10	Unmodified	_NEAGEVSKHF_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	A375_MHC_IP_R1	1	559.6664428710938	2	559.26727	1116.51999	-0.79842	-0.00044653	0.014166	7.9226E-06	-0.78425	-0.00043861	559.2673597956626	23.661	0.35658	23.661	23.381	23.737	0					8	6	2	0	0	0	0.017076	1	6550	6550		102.55	66.422	1	8427800			36408	5371	26652	26869	35417	35417					-0.0336122343014722
NEAGEVSKHF	10	Unmodified	_NEAGEVSKHF_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	A375_MHC_IP_R2	2	373.5806579589844	3	373.180605	1116.51999	0.070476	2.63E-05	-0.54996	-0.00020523	-0.47948	-0.00017893	373.18057025969836	21.627	0.25521	22.246	22.081	22.336	0.61932					12	4	3	0	0	0	0.7116	1	6848	6848		6.6235	5.4301	1	1702200			36409	5371	26652	26869	35418	35418					-0.0336122343014722
NEAGEVSKHF	10	Unmodified	_NEAGEVSKHF_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	A375_MHC_IP_R2	2	559.6671142578125	2	559.26727	1116.51999	-1.02	-0.00057046	0.6737	0.00037678	-0.3463	-0.00019368	559.2677204508545	21.64	0.4594	22.259	21.979	22.439	0.61932					17	8	3	0	0	0	0.29764	1	6819	6819		57.204	28.122	1	3971800			36410	5371	26652	26869	35419	35419					-0.0336122343014722
NEAGLVHGY	9	Unmodified	_NEAGLVHGY_					0	0	0		ENSG00000179431|ENST00000317811|FJX1	ENSG00000179431|ENST00000317811|FJX1	ENSG00000179431|ENST00000317811|FJX1	MULTI-SECPEP	A375_MHC_IP_R1	1	480.47174072265625	2	480.232699	958.450845	-0.23475	-0.00011274	0.17673	8.4873E-05	-0.05802	-2.7863E-05	480.2329625129012	35.821	0.4583	35.821	35.625	36.084	0					12	8	2	0	0	0	0.1277	1	11933	11933		54.774	18.647	1	1161400			36411	8231	26653	26870	35420	35420					-0.030042626590443433
NEAGLVHGY	9	Unmodified	_NEAGLVHGY_					0	0	0		ENSG00000179431|ENST00000317811|FJX1	ENSG00000179431|ENST00000317811|FJX1	ENSG00000179431|ENST00000317811|FJX1	MULTI-MATCH	A375_MHC_IP_R2	2		2	480.232699	958.450845	-0.78482	-0.0003769	0.75974	0.00036485	-0.025077	-1.2043E-05	480.23305029383505	35.09	0.40354	35.854	35.627	36.03	0.76338	0.016559	0.00030836	NaN	54.774	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1621900			36412	8231	26653	26870							-0.030042626590443433
NEAGPPEGY	9	Unmodified	_NEAGPPEGY_					0	0	0		ENSG00000143401|ENST00000583931|ANP32E;nc|ENSG00000143401|Q9BTT0-3|ANP32E;nc|ENSG00000143401|Q9BTT0-2|ANP32E;ENST00000533654.5_1_1:150192985-150202975:-|nuORF	ENSG00000143401|ENST00000583931|ANP32E	ENSG00000143401|ENST00000583931|ANP32E	MULTI-SECPEP	A375_MHC_IP_R2	2	467.6004638671875	2	467.201064	932.387576	-1.1384	-0.00053186	-0.73946	-0.00034548	-1.8779	-0.00087734	467.20071624022756	33.786	0.60678	34.539	34.196	34.803	0.75225					19	11	2	0	0	0	0.49205	1	12185	12185		34.402	15.145	1	1900600			36413	5385	26654	26871	35421	35421					-0.08132248166930367
NEAGPPEGY	9	Unmodified	_NEAGPPEGY_					0	0	0		ENSG00000143401|ENST00000583931|ANP32E;nc|ENSG00000143401|Q9BTT0-3|ANP32E;nc|ENSG00000143401|Q9BTT0-2|ANP32E;ENST00000533654.5_1_1:150192985-150202975:-|nuORF	ENSG00000143401|ENST00000583931|ANP32E	ENSG00000143401|ENST00000583931|ANP32E	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	467.201064	932.387576	-0.31707	-0.00014814	-1.7314	-0.0008089	-2.0484	-0.00095703	467.20016358135007	34.431	1.0112	34.431	33.748	34.759	0	-0.053898	-0.00049149	NaN	49.527	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1717100			36414	5385	26654	26871							-0.08132248166930367
NEAKCCHPII	10	Unmodified	_NEAKCCHPII_					0	0	0			REV__CON__Q3SZ57	REV__CON__Q3SZ57	MULTI-SECPEP	A375_MHC_IP_R2	2	563.669189453125	2	564.270444	1126.52633	-0.39419	-0.00022243	1.0337	0.00058326	0.63947	0.00036083	564.2708012668018	84.353	0.354	85.089	84.968	85.322	0.7364					9	6	2	0	0	0	0.90513	1	32024	32024		4.897	0	1	503610	+	+	36415	15887	26655	26872	35422	35422					-0.031867447946297034
NEAKLDRHVIY	11	Unmodified	_NEAKLDRHVIY_					0	0	0			REV__MARK1|p.I276Ffs*13|1|0.41|ENSG00000116141|chr1:220618671-220618671|T/-|frameshift_variant	REV__MARK1|p.I276Ffs*13|1|0.41|ENSG00000116141|chr1:220618671-220618671|T/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	679.4739379882812	2	679.364776	1356.715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.627	1	63.627	63.127	64.127	0								0	0	0	0.16051	1	23003	23003		13.906	1.6654	1		+		36416	17940	26656	26873	35423	35423					0.050909473748788514
NEALEVEYE	9	Unmodified	_NEALEVEYE_					0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	A375_MHC_IP_R2	2	549.1755981445312	2	548.245669	1094.47678	-1.005	-0.00055098	4.4163	0.0024212	3.4113	0.0018702	548.2462371357001	49.223	0.65803	49.98	49.639	50.297	0.75736					36	12	4	0	0	0	0.22528	1	18577	18577		36.127	3.8215	1	3818600	+		36417	16815	26657	26874	35424	35424					-0.06667457998082682
NEALFVIYVSC	11	Unmodified	_NEALFVIYVSC_					0	0	0			REV__ENST00000524875.1_1_11:92903372-92916023:-|nuORF	REV__ENST00000524875.1_1_11:92903372-92916023:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	420.3099060058594	3	419.877647	1256.61111	0.024732	1.0385E-05	0.12131	5.0936E-05	0.14604	6.1321E-05	419.8776305409837	47.956	0.3012	48.717	48.532	48.833	0.76128					8	5	2	0	0	0	0.9754	1	17954	17954		6.6235	2.7775	1	583060	+		36418	21621	26658	26875	35425	35425					-0.006930957770009627
NEALPALVEF	10	Unmodified	_NEALPALVEF_					0	0	0			REV__nc|ENSG00000138698|P52306-6|RAP1GDS1	REV__nc|ENSG00000138698|P52306-6|RAP1GDS1	MULTI-SECPEP	A375_MHC_IP_R1	1	551.12646484375	2	551.792589	1101.57063	-0.74991	-0.0004138	2.1896	0.0012082	1.4397	0.0007944	551.7920566500602	84.919	0.86929	84.919	84.391	85.261	0					28	16	3	0	0	0	0.88918	1	31105	31105		18.146	7.3224	1	1209300	+		36419	19113	26659	26876	35426	35426					0.023903058948462785
NEAMLFESTS	10	Unmodified	_NEAMLFESTS_					0	0	0			REV__ENSG00000110318|ENST00000263468|CEP126	REV__ENSG00000110318|ENST00000263468|CEP126	MULTI-MSMS	A375_MHC_IP_R1	1	565.6613159179688	2	564.747521	1127.48049	-0.42613	-0.00024066	0.22369	0.00012633	-0.20244	-0.00011433	564.7475145015311	57.871	0.60905	57.871	57.568	58.177	0					30	11	3	0	0	0	0.62015	1	20714	20714		19.362	2.249	1	4078700	+		36420	17623	26660	26877	35427	35427					-0.07815111495870042
NEAMLFESTS	10	Unmodified	_NEAMLFESTS_					0	0	0			REV__ENSG00000110318|ENST00000263468|CEP126	REV__ENSG00000110318|ENST00000263468|CEP126	MULTI-MSMS	A375_MHC_IP_R2	2	565.661376953125	2	564.747521	1127.48049	-0.85349	-0.00048201	0.14928	8.4305E-05	-0.70421	-0.0003977	564.7474749908201	57.209	0.6608	57.959	57.612	58.273	0.74979					29	12	3	0	0	0	0.60608	1	21576	21576		20.415	1.1575	1	4753100	+		36421	17623	26660	26877	35428	35428					-0.07815111495870042
NEAMVRFYY	9	Unmodified	_NEAMVRFYY_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R1	1	597.1796264648438	2	596.776416	1191.53828	-0.25115	-0.00014988	3.0127	0.0017979	2.7616	0.0016481	596.7788449339955	111.28	0.46236	111.28	111.1	111.57	0					15	8	2	0	0	0	0.63327	1	40801	40801		24.021	9.1823	1	2179000	+		36422	19932	26661	26878	35429	35429					-0.04982804779774597
NEANEQYV	8	Unmodified	_NEANEQYV_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	A375_MHC_IP_R1	1	483.6560974121094	2	483.711796	965.40904	-0.15047	-7.2782E-05	-0.054968	-2.6589E-05	-0.20543	-9.9371E-05	483.7116870678883	45.78	0.70987	45.78	45.434	46.144	0					21	13	2	0	0	0	0.72008	1	15992	15992		28.487	5.7506	1	1654900			36423	8235	26662	26879	35430	35430					-0.07504863138228757
NEANEQYV	8	Unmodified	_NEANEQYV_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	A375_MHC_IP_R2	2	483.6564025878906	2	483.711796	965.40904	-0.68246	-0.00033011	-0.35989	-0.00017409	-1.0424	-0.0005042	483.7116860928972	45.121	0.81537	45.889	45.389	46.204	0.76799					25	15	2	0	0	0	0.7338	1	16762	16762		24.674	1.9376	1	1937900			36424	8235	26662	26879	35431	35431					-0.07504863138228757
NEARGNSSL	9	Unmodified	_NEARGNSSL_					0	0	0		ENSG00000177000|ENST00000376590|MTHFR;nc|ENSG00000177000|P42898-2|MTHFR	ENSG00000177000|ENST00000376590|MTHFR	ENSG00000177000|ENST00000376590|MTHFR	MSMS	A375_MHC_IP_R2	2	474.152587890625	2	474.230687	946.446822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.289	1	62.034	61.534	62.534	0.74503								0	0	0	0.1521	1	23226	23226		18.146	1.2041	1				36425	8053	26663	26880	35432	35432					-0.028543521527353732
NEASVLHNL	9	Unmodified	_NEASVLHNL_					0	0	0		nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;MYH14|p.R126W|1|0.33|ENSG00000105357|chr19:50210741-50210741|C/T|missense_variant;nc|ENSG00000078814|A7E2Y1-2|MYH7B;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;nc|ENSG00000078814|A7E2Y1|MYH7B;ENSG00000078814|ENST00000262873|MYH7B;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000078814|A7E2Y1|MYH7B;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-SECPEP	A375_MHC_IP_R1	1	499.1585388183594	2	498.759081	995.503609	-0.34285	-0.000171	0.42053	0.00020974	0.07768	3.8744E-05	498.7592752460536	50.89	1.0135	50.89	50.561	51.575	0					38	19	3	0	0	0	0.011107	1	18000	18000		110.67	46.438	1	10297000			36426	2162;2592;4474;4507;1684	26664	26881	35433	35433					0.005676954037653559
NEASVLHNL	9	Unmodified	_NEASVLHNL_					0	0	0		nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;MYH14|p.R126W|1|0.33|ENSG00000105357|chr19:50210741-50210741|C/T|missense_variant;nc|ENSG00000078814|A7E2Y1-2|MYH7B;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;nc|ENSG00000078814|A7E2Y1|MYH7B;ENSG00000078814|ENST00000262873|MYH7B;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000078814|A7E2Y1|MYH7B;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-SECPEP	A375_MHC_IP_R2	2	499.1591491699219	2	498.759081	995.503609	-0.76646	-0.00038228	0.52151	0.00026011	-0.24495	-0.00012217	498.759368881799	49.936	0.71207	50.69	50.294	51.006	0.75406					27	13	3	0	0	0	0.0082179	1	18758	18758		128.93	57.01	1	9613500			36427	2162;2592;4474;4507;1684	26664	26881	35434	35434					0.005676954037653559
NEAWFWSGF	9	Unmodified	_NEAWFWSGF_					0	0	0			REV__ENSG00000198932|ENST00000537097|GPRASP1	REV__ENSG00000198932|ENST00000537097|GPRASP1	MULTI-SECPEP	A375_MHC_IP_R1	1	572.6685791015625	2	572.248349	1142.48214	-0.25572	-0.00014634	2.7391	0.0015674	2.4834	0.0014211	572.250193104045	25.131	0.76097	25.131	24.852	25.613	0					22	14	2	0	0	0	0.62767	1	7432	7432		7.2892	0	1	2425000	+		36428	22451	26665	26882	35435	35435					-0.08339689624949642
NECGERCCGC	10	Unmodified	_NECGERCCGC_					0	0	0			REV__ENSG00000144655|ENST00000273153|CSRNP1	REV__ENSG00000144655|ENST00000273153|CSRNP1	MSMS	A375_MHC_IP_R1	1	537.166748046875	2	537.167004	1072.31945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.361	1	46.361	45.861	46.861	0								0	0	0	0.15531	1	16261	16261		3.5965	1.2938	1		+		36429	19438	26666	26883	35436	35436					-0.21381223676758054
NECGKALCV	9	Unmodified	_NECGKALCV_					0	0	0		ENSG00000165097|ENST00000650836|KDM1B	ENSG00000165097|ENST00000650836|KDM1B	ENSG00000165097|ENST00000650836|KDM1B	MSMS	A375_MHC_IP_R2	2	468.6688537597656	2	468.717513	935.420473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.258	1	67.994	67.494	68.494	0.73631								0	0	0	0.15486	1	25478	25478		11.64	1.4569	1				36430	6911	26667	26884	35437	35437					-0.049820806401157824
NECGKSFSWW	10	Unmodified	_NECGKSFSWW_					0	0	0		ENSG00000196456|ENST00000329630|ZNF775	ENSG00000196456|ENST00000329630|ZNF775	ENSG00000196456|ENST00000329630|ZNF775	MSMS	A375_MHC_IP_R1	1	622.1820068359375	2	622.263673	1242.51279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.833	1	82.833	82.333	83.333	0								0	0	0	0.15391	1	30297	30297		8.1555	1.4324	1				36431	9044	26668	26885	35438	35438					-0.09876279302193325
NECIITSYIN	10	Unmodified	_NECIITSYIN_					0	0	0			REV__LVRN|p.R768C|4|0.29|ENSG00000172901|chr5:116012428-116012428|C/T|missense_variant	REV__LVRN|p.R768C|4|0.29|ENSG00000172901|chr5:116012428-116012428|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	584.6979370117188	2	585.278989	1168.54342	-0.56842	-0.00033269	1.1233	0.00065745	0.55489	0.00032477	585.280054019491	41.832	1.2215	42.606	41.743	42.964	0.77451					31	23	2	0	0	0	0.87043	1	15305	15305		7.1017	0	1	2115900	+		36432	26970	26669	26886	35439	35439					-0.034105457078339896
NEDDCVVRF	9	Unmodified	_NEDDCVVRF_					0	0	0		nc|ENSG00000259207|P05106-2|ITGB3;nc|ENSG00000259207|P05106-3|ITGB3;ENSG00000259207|ENST00000559488|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	MULTI-MSMS	A375_MHC_IP_R2	2	549.1392211914062	2	548.740031	1095.46551	-1.0282	-0.00056422	-1.2237	-0.00067152	-2.252	-0.0012357	549.2404940237982	61.839	1.2641	62.582	62.17	63.434	0.74263					48	24	4	0	0	0	0.13845	2	23511	23511;23660		43.772	16.889	1	3429200			36433	9926	26670	26887	35440;35441	35440					-0.0784055857320709
NEDDEDMEDE	10	Unmodified	_NEDDEDMEDE_					0	0	0		nc|ENSG00000102935|Q2M1K9|ZNF423;ENSG00000102935|ENST00000563137|ZNF423	nc|ENSG00000102935|Q2M1K9|ZNF423	nc|ENSG00000102935|Q2M1K9|ZNF423	MSMS	A375_MHC_IP_R2	2	620.5485229492188	2	620.693337	1239.37212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.476	1	94.221	93.721	94.721	0.74474								0	0	0	0.15591	1	35536	35536		1.6526	0	1				36434	2404	26671	26888	35442	35442					-0.2379899232760181
NEDDVDAHWY	10	Unmodified	_NEDDVDAHWY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;TTN|p.L14011*|1|0.26|ENSG00000155657|chr2:178618595-178618595|A/-|frameshift_variant;TTN|p.V5956Efs*8|1|0.3|ENSG00000155657|chr2:178729292-178729338|CAGGGCAACTCTAGTACTGCATGAGCAGCTGCCGCCTTCATTGGATA/-|frameshift_variant;TTN|p.F5884Lfs*5|1|0.04|ENSG00000155657|chr2:178729553-178729553|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R1	1	632.470458984375	2	632.249274	1262.484	-0.48492	-0.00030659	1.0563	0.00066786	0.57141	0.00036127	632.2498211984222	71.472	0.60803	71.472	71.057	71.665	0					18	11	2	0	0	0	0.87163	1	25931	25931		19.257	1.1106	1	3702000			36435	6151;14694;14693	26672	26889	35443	35443					-0.13674725397663678
NEDEDSPNKLY	11	Unmodified	_NEDEDSPNKLY_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31;ENST00000480540.1_1_14:59261390-59261744:+|nuORF	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-SECPEP	A375_MHC_IP_R1	1	662.6880493164062	2	662.288596	1322.56264	-0.46224	-0.00030614	0.13225	8.759E-05	-0.32999	-0.00021855	662.2886397359547	33.651	0.55668	33.651	33.393	33.95	0					29	10	4	0	0	0	2.5081E-07	1	10993	10993		216.43	152.47	1	11469000			36436	1508	26673	26890	35444	35444					-0.08573917883222748
NEDEDSPNKLY	11	Unmodified	_NEDEDSPNKLY_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31;ENST00000480540.1_1_14:59261390-59261744:+|nuORF	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-SECPEP	A375_MHC_IP_R2	2	662.6881713867188	2	662.288596	1322.56264	-0.98306	-0.00065107	-0.25691	-0.00017015	-1.24	-0.00082121	662.2885857231237	33.05	0.56082	33.799	33.53	34.091	0.74868					25	10	4	0	0	0	3.6723E-17	1	11781	11781		224.31	151.34	1	13844000			36437	1508	26673	26890	35445	35445					-0.08573917883222748
NEDEEETTKRY	11	Unmodified	_NEDEEETTKRY_					0	0	0			REV__LRP8|p.D876N|1|0.2|ENSG00000157193|chr1:53250740-53250740|C/T|missense_variant	REV__LRP8|p.D876N|1|0.2|ENSG00000157193|chr1:53250740-53250740|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	472.27484130859375	3	471.875799	1412.60557	-0.91729	-0.00043285	0.52879	0.00024952	-0.38851	-0.00018333	471.87568975120786	21.613	0.66054	22.232	21.726	22.387	0.61932					24	12	3	0	0	0	0.73557	1	6856	6856		3.5927	0.96144	1	2835900	+		36438	26950	26674	26891	35446	35446					-0.08423147825806154
NEDEPIRVSY	10	Unmodified	_NEDEPIRVSY_					0	0	0		nc|ENSG00000068308|Q96G74-4|OTUD5;nc|ENSG00000068308|Q96G74-2|OTUD5;nc|ENSG00000068308|Q96G74-3|OTUD5;ENSG00000068308|ENST00000376488|OTUD5;nc|ENSG00000068308|Q96G74|OTUD5	nc|ENSG00000068308|Q96G74-4|OTUD5	nc|ENSG00000068308|Q96G74-4|OTUD5	MULTI-MSMS	A375_MHC_IP_R1	1	407.8830261230469	3	407.863053	1220.56733	-0.063361	-2.5842E-05	0.72476	0.0002956	0.6614	0.00026976	407.86340818491607	20.612	0.45865	20.612	20.283	20.742	0					12	8	2	0	0	0	0.70496	1	5346	5346		8.9762	3.9287	1	2954400			36439	1455	26675	26892	35447	35447					-0.03412988949799001
NEDEPIRVSY	10	Unmodified	_NEDEPIRVSY_					0	0	0		nc|ENSG00000068308|Q96G74-4|OTUD5;nc|ENSG00000068308|Q96G74-2|OTUD5;nc|ENSG00000068308|Q96G74-3|OTUD5;ENSG00000068308|ENST00000376488|OTUD5;nc|ENSG00000068308|Q96G74|OTUD5	nc|ENSG00000068308|Q96G74-4|OTUD5	nc|ENSG00000068308|Q96G74-4|OTUD5	MULTI-MSMS	A375_MHC_IP_R1	1	611.6900634765625	2	611.290942	1220.56733	-0.366	-0.00022374	-0.03495	-2.1364E-05	-0.40095	-0.0002451	611.2909649230355	50.379	0.61388	50.379	50.049	50.663	0					29	11	4	0	0	0	3.2532E-05	1	17822	17822		180.74	94.405	1	12683000			36440	1455	26675	26892	35448	35448					-0.03412988949799001
NEDEPIRVSY	10	Unmodified	_NEDEPIRVSY_					0	0	0		nc|ENSG00000068308|Q96G74-4|OTUD5;nc|ENSG00000068308|Q96G74-2|OTUD5;nc|ENSG00000068308|Q96G74-3|OTUD5;ENSG00000068308|ENST00000376488|OTUD5;nc|ENSG00000068308|Q96G74|OTUD5	nc|ENSG00000068308|Q96G74-4|OTUD5	nc|ENSG00000068308|Q96G74-4|OTUD5	MULTI-SECPEP	A375_MHC_IP_R2	2	611.6901245117188	2	611.290942	1220.56733	-0.78035	-0.00047702	-0.074592	-4.5597E-05	-0.85494	-0.00052262	611.2909743962969	49.767	0.61036	50.521	50.244	50.854	0.75406					31	11	4	0	0	0	0.029137	1	18661	18661		157.49	71.156	1	13463000			36441	1455	26675	26892	35449	35449					-0.03412988949799001
NEDFEFLY	8	Unmodified	_NEDFEFLY_					0	0	0		nc|ENSG00000164675|Q8NA54-2|IQUB;ENSG00000164675|ENST00000324698|IQUB	nc|ENSG00000164675|Q8NA54-2|IQUB	nc|ENSG00000164675|Q8NA54-2|IQUB	MULTI-MSMS	A375_MHC_IP_R1	1	539.13330078125	2	538.732197	1075.44984	-0.54284	-0.00029244	1.2203	0.00065739	0.67742	0.00036495	538.7334511198626	105.56	2.0394	105.56	105.1	107.14	0					113	39	4	0	0	0	0.73111	1	38891	38891		24.674	3.8027	1	70780000			36442	6864	26676	26893	35450	35450					-0.08486521818599613
NEDFLHDLK	9	Unmodified	_NEDFLHDLK_					0	0	0		ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	MULTI-SECPEP	A375_MHC_IP_R1	1	566.1770629882812	2	565.77747	1129.54039	-0.59564	-0.000337	-0.83604	-0.00047301	-1.4317	-0.00081001	565.7770741011205	85.011	0.61385	85.011	84.697	85.311	0					19	11	2	0	0	0	0.65246	1	31160	31160		15.847	0	1	3470300			36443	1047	26677	26894	35451	35451					-0.019200527703333137
NEDFLHDLK	9	Unmodified	_NEDFLHDLK_					0	0	0		ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	MULTI-SECPEP	A375_MHC_IP_R2	2	566.17626953125	2	565.77747	1129.54039	-0.34239	-0.00019372	-1.2176	-0.0006889	-1.56	-0.00088262	565.7769096036258	84.189	0.66443	84.929	84.611	85.276	0.73962					25	12	3	0	0	0	0.65246	1	32017	32017		10.824	2.9138	1	3730500			36444	1047	26677	26894	35452	35452					-0.019200527703333137
NEDHETIRNY	10	Unmodified	_NEDHETIRNY_					0	0	0		ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-SECPEP	A375_MHC_IP_R1	1	431.2882995605469	3	430.861824	1289.56364	-0.26841	-0.00011565	-0.34811	-0.00014999	-0.61652	-0.00026564	430.8616540176592	19.579	0.25439	19.579	19.42	19.674	0					6	4	2	0	0	0	0.94521	1	4861	4861		1.2148	0.4383	1	1030400			36445	4773	26678	26895	35453	35453					-0.06955658723632041
NEDIDIVEAS	10	Unmodified	_NEDIDIVEAS_					0	0	0			REV__tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1	REV__tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	552.6716918945312	2	552.756401	1103.49825	-0.80604	-0.00044554	1.3346	0.0007377	0.52854	0.00029216	552.7568128130278	66.926	0.40727	66.926	66.684	67.091	0					12	7	2	0	0	0	0.91442	1	24166	24166		11.495	2.1116	1	1544700	+		36446	28680	26679	26896	35454	35454					-0.049360729693717076
NEDKNDGCSV	10	Unmodified	_NEDKNDGCSV_					0	0	0			REV__tr|U7STU3|U7STU3_FUSNUSpermidine/putrescinetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01188PE=4SV=1	REV__tr|U7STU3|U7STU3_FUSNUSpermidine/putrescinetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01188PE=4SV=1	MSMS	A375_MHC_IP_R2	2	540.7101440429688	2	540.716753	1079.41895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.46	1	102.22	101.72	102.72	0.76428								0	0	0	0.15372	1	38457	38457		8.7454	0	1		+		36447	28505	26680	26897	35455	35455					-0.11758043195163737
NEDKYEYEI	9	Unmodified	_NEDKYEYEI_					0	0	0			REV__tr|U7SRW6|U7SRW6_FUSNUDiamineN-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01453PE=4SV=1	REV__tr|U7SRW6|U7SRW6_FUSNUDiamineN-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01453PE=4SV=1	MSMS	A375_MHC_IP_R2	2	601.6956787109375	2	601.764226	1201.5139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.873	1	65.611	65.111	66.111	0.73811								0	0	0	0.15468	1	24595	24595		13.906	0.86358	1		+		36448	28407	26681	26898	35456	35456					-0.07879786452326698
NEDLNKVHF	9	Unmodified	_NEDLNKVHF_					0	0	0			REV__CDK1|p.S251F|1|0.34|ENSG00000170312|chr10:60792246-60792246|C/T|missense_variant	REV__CDK1|p.S251F|1|0.34|ENSG00000170312|chr10:60792246-60792246|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	558.8167114257812	2	558.277638	1114.54072	-0.58181	-0.00032481	-1.3132	-0.00073313	-1.895	-0.0010579	558.2771782068431	91.356	1.1124	91.356	91.098	92.211	0					28	21	2	0	0	0	0.32092	1	33498	33498		29.082	7.3349	1	2254000	+		36449	15625	26682	26899	35457	35457					-0.011966330504719735
NEDLNQLIKRY	11	Unmodified	_NEDLNQLIKRY_					0	0	0		ENSG00000173145|ENST00000371361|NOC3L	ENSG00000173145|ENST00000371361|NOC3L	ENSG00000173145|ENST00000371361|NOC3L	MULTI-SECPEP	A375_MHC_IP_R2	2	468.6873474121094	3	469.252652	1404.73613	-0.79318	-0.0003722	-0.028956	-1.3588E-05	-0.82213	-0.00038579	469.2527384336524	62.172	0.30534	62.915	62.774	63.079	0.74263					7	5	2	0	0	0	0.98663	1	23515	23515		8.7518	4.6352	1	679110			36450	7772	26683	26900	35458	35458					0.04994912683696384
NEDLRADDL	9	Unmodified	_NEDLRADDL_					0	0	0		ENSG00000165516|ENST00000298307|KLHDC2;nc|ENSG00000165516|Q9Y2U9-2|KLHDC2	ENSG00000165516|ENST00000298307|KLHDC2	ENSG00000165516|ENST00000298307|KLHDC2	MULTI-SECPEP	A375_MHC_IP_R2	2	530.1714477539062	2	530.74891	1059.48327	-0.71374	-0.00037882	-1.0104	-0.00053629	-1.7242	-0.00091511	530.7483906626944	80.931	0.61513	81.675	81.365	81.981	0.74474					18	11	2	0	0	0	0.3213	1	30845	30845		24.021	4.7636	1	1299300			36451	6962	26684	26901	35459	35459					-0.04409520046715443
NEDLRLHLLLN	11	Unmodified	_NEDLRLHLLLN_					0	0	0		ENSG00000185269|ENST00000409678|NOTUM	ENSG00000185269|ENST00000409678|NOTUM	ENSG00000185269|ENST00000409678|NOTUM	MSMS	A375_MHC_IP_R1	1	675.3829956054688	2	675.380426	1348.7463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.36	1	110.36	109.86	110.86	0								0	0	0	0.16307	1	40466	40466		2.7352	0.23671	1				36452	8654	26685	26902	35460	35460					0.08587520408968885
NEDNGIIKAF	10	Unmodified	_NEDNGIIKAF_					0	0	0		ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135660-185136437:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	561.1851806640625	2	560.785296	1119.55604	-0.63719	-0.00035733	0.75232	0.00042189	0.11512	6.456E-05	560.7856346575732	66.001	0.50661	66.001	65.768	66.275	0					19	9	3	0	0	0	0.01835	1	23888	23888		162.31	75.983	1	3851800			36453	7879	26686	26903	35461	35461					0.0010423374671972852
NEDNGIIKAF	10	Unmodified	_NEDNGIIKAF_					0	0	0		ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135660-185136437:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	560.6334228515625	2	560.785296	1119.55604	-0.71439	-0.00040062	-0.10079	-5.6522E-05	-0.81518	-0.00045714	560.7852722645696	65.233	0.66029	65.971	65.664	66.324	0.73811					22	12	2	0	0	0	0.0025034	1	24777	24777		97.741	29.903	1	4340200			36454	7879	26686	26903	35462	35462					0.0010423374671972852
NEDPEGSRITY	11	Unmodified	_NEDPEGSRITY_					0	0	0		ENSG00000124596|ENST00000424266|OARD1;chr6:41071675-41097713|367|14.32|0.3|5.56|-|ENST00000480585|OARD1,OARD1;ENST00000465893.1_1_6:41037763-41039373:-|nuORF;chr6:41071675-41075267|362|10.85|0.55|4.31|-|ENST00000488238|OARD1,OARD1	ENSG00000124596|ENST00000424266|OARD1	ENSG00000124596|ENST00000424266|OARD1	MULTI-MSMS	A375_MHC_IP_R1	1	641.19091796875	2	640.791306	1279.56806	-0.57887	-0.00037093	-0.12591	-8.068E-05	-0.70478	-0.00045161	640.7911857621297	33.969	0.50517	33.969	33.748	34.253	0					20	9	3	0	0	0	0.00032653	1	11135	11135		119.6	71.854	1	6781700			36455	3918	26687	26904	35463	35463					-0.06054194300736526
NEDPEGSRITY	11	Unmodified	_NEDPEGSRITY_					0	0	0		ENSG00000124596|ENST00000424266|OARD1;chr6:41071675-41097713|367|14.32|0.3|5.56|-|ENST00000480585|OARD1,OARD1;ENST00000465893.1_1_6:41037763-41039373:-|nuORF;chr6:41071675-41075267|362|10.85|0.55|4.31|-|ENST00000488238|OARD1,OARD1	ENSG00000124596|ENST00000424266|OARD1	ENSG00000124596|ENST00000424266|OARD1	MULTI-MSMS	A375_MHC_IP_R2	2	641.19091796875	2	640.791306	1279.56806	-1.0535	-0.00067504	0.15366	9.8467E-05	-0.89979	-0.00057658	640.7913385172793	33.317	0.45708	34.069	33.891	34.348	0.75225					19	8	3	0	0	0	8.584E-05	1	11936	11936		136.86	93.092	1	8123600			36456	3918	26687	26904	35464	35464					-0.06054194300736526
NEDPNARLI	9	Unmodified	_NEDPNARLI_					0	0	0		ENSG00000129250|ENST00000320785|KIF1C	ENSG00000129250|ENST00000320785|KIF1C	ENSG00000129250|ENST00000320785|KIF1C	MULTI-SECPEP	A375_MHC_IP_R1	1	521.66943359375	2	521.269813	1040.52507	-0.61279	-0.00031943	0.474	0.00024708	-0.13879	-7.2349E-05	521.2699313475305	39.531	0.5564	39.531	39.289	39.845	0					21	10	3	0	0	0	0.13064	1	13504	13504		47.749	0	1	5328800			36457	4183	26688	26905	35465	35465					0.006430804324736528
NEDPNARLI	9	Unmodified	_NEDPNARLI_					0	0	0		ENSG00000129250|ENST00000320785|KIF1C	ENSG00000129250|ENST00000320785|KIF1C	ENSG00000129250|ENST00000320785|KIF1C	MULTI-MSMS	A375_MHC_IP_R2	2	521.6691284179688	2	521.269813	1040.52507	-0.92685	-0.00048314	0.40712	0.00021222	-0.51973	-0.00027092	521.270123253125	38.704	0.56171	39.479	39.25	39.812	0.77451					20	10	3	0	0	0	0.04093	1	14263	14263		67.838	0	1	5234000			36458	4183	26688	26905	35466	35466					0.006430804324736528
NEDPTVAAF	9	Unmodified	_NEDPTVAAF_					0	0	0		nc|ENSG00000138496|Q8IXQ6|PARP9;nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9	nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6|PARP9	MULTI-MSMS	A375_MHC_IP_R1	1	482.6241760253906	2	482.224539	962.434526	0.091632	4.4187E-05	-0.051508	-2.4838E-05	0.040124	1.9349E-05	482.22445955513626	69.674	0.80895	69.674	69.377	70.185	0					23	15	2	0	0	0	0.13845	1	25295	25295		43.772	9.67	1	1900200			36459	14635	26689	26906	35467	35467					-0.048193886158060195
NEDPTVAAF	9	Unmodified	_NEDPTVAAF_					0	0	0		nc|ENSG00000138496|Q8IXQ6|PARP9;nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9	nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6|PARP9	MULTI-MSMS	A375_MHC_IP_R2	2	482.6241760253906	2	482.224539	962.434526	-0.47313	-0.00022815	-0.17913	-8.638E-05	-0.65226	-0.00031453	482.2244661012788	68.95	1.0129	69.685	69.323	70.335	0.73511					26	19	2	0	0	0	0.13845	1	26129	26129		43.772	16.889	1	2702200			36460	14635	26689	26906	35468	35468					-0.048193886158060195
NEDQDDEEFL	10	Unmodified	_NEDQDDEEFL_					0	0	0		nc|ENSG00000136940|Q13371-2|PDCL;ENSG00000136940|ENST00000259467|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	MSMS	A375_MHC_IP_R1	1	627.185302734375	2	627.243854	1252.47316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.206	1	79.206	78.706	79.706	0								0	0	0	0.15508	1	28910	28910		4.3292	1.0479	1				36461	4847	26690	26907	35469	35469					-0.14298172562598666
NEDTEQEWEY	10	Unmodified	_NEDTEQEWEY_					0	0	0			REV__WWOX|p.G62E|1|0.55|ENSG00000186153|chr16:78109790-78109790|G/A|missense_variant	REV__WWOX|p.G62E|1|0.55|ENSG00000186153|chr16:78109790-78109790|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	672.5069580078125	2	671.757129	1341.49971	-0.82505	-0.00055424	-1.2911	-0.00086731	-2.1162	-0.0014215	671.75644692611	84.8	0.30771	84.8	84.596	84.904	0					8	5	2	0	0	0	0.9269	1	31075	31075		6.7232	3.7279	1	1497200	+		36462	29001	26691	26908	35470	35470					-0.15738483671248105
NEDTSYMSF	9	Unmodified	_NEDTSYMSF_					0	0	0			REV__ENST00000590367.5_1_17:42931463-42950195:-|nuORF	REV__ENST00000590367.5_1_17:42931463-42950195:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	546.8392944335938	2	547.210772	1092.40699	-0.68327	-0.00037389	2.7273	0.0014924	2.0441	0.0011185	547.2124204142286	86.77	0.25316	86.77	86.679	86.933	0					6	4	2	0	0	0	0.67483	1	31855	31855		10.074	3.3508	1	1321700	+		36463	26432	26692	26909	35471	35471					-0.1355165993834362
NEDVQPPLEN	10	Unmodified	_NEDVQPPLEN_					0	0	0		nc|ENSG00000137713|P30154-3|PPP2R1B	nc|ENSG00000137713|P30154-3|PPP2R1B	nc|ENSG00000137713|P30154-3|PPP2R1B	MSMS	A375_MHC_IP_R1	1	385.5958251953125	3	385.515654	1153.52513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.959	1	28.959	28.459	29.459	0								0	0	0	0.15561	1	8999	8999		2.6312	0.34846	1				36464	14629	26693	26910	35472	35472					-0.04548964358195917
NEDYKNPY	8	Unmodified	_NEDYKNPY_					0	0	0		tr|U7SFN9|U7SFN9_FUSNULipopolysaccharideheptosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02362PE=4SV=1	tr|U7SFN9|U7SFN9_FUSNULipopolysaccharideheptosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02362PE=4SV=1	tr|U7SFN9|U7SFN9_FUSNULipopolysaccharideheptosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02362PE=4SV=1	MSMS	A375_MHC_IP_R1	1	521.66943359375	2	521.727446	1041.44034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.491	1	39.491	38.991	39.991	0								0	0	0	0.16876	1	13504	13504		18.135	3.5533	1				36465	29390	26694	26911	35473	35473					-0.07872290104137392
NEDYNLYTF	9	Unmodified	_NEDYNLYTF_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	A375_MHC_IP_R2	2	590.1525268554688	2	589.753661	1177.49277	-0.54673	-0.00032243	-0.72278	-0.00042626	-1.2695	-0.0007487	589.7534546570984	102.2	0.65997	102.96	102.62	103.28	0.76428					16	12	2	0	0	0	0.53367	1	38755	38755		18.146	5.6148	1	1311600			36466	6895	26695	26912	35474	35474					-0.08887751761176332
NEDYSFEV	8	Unmodified	_NEDYSFEV_					0	0	0			REV__ENSG00000105875|ENST00000354475|WDR91	REV__ENSG00000105875|ENST00000354475|WDR91	MULTI-MSMS	A375_MHC_IP_R2	2	502.10626220703125	2	501.70618	1001.39781	-0.60991	-0.00030599	0.60183	0.00030194	-0.0080731	-4.0503E-06	501.7065246648975	130.77	0.25493	130.98	130.86	131.11	0.2142					7	4	2	0	0	0	0.73111	1	51463	51463		25.399	0	1	10420000	+		36467	17415	26696	26913	35475	35475					-0.10283685232366224
NEDYSFEV	8	Unmodified	_NEDYSFEV_					0	0	0			REV__ENSG00000105875|ENST00000354475|WDR91	REV__ENSG00000105875|ENST00000354475|WDR91	MULTI-MATCH	A375_MHC_IP_R1	1		2	501.70618	1001.39781	-0.603	-0.00030253	2.1091	0.0010581	1.5061	0.0007556	501.7066670191887	131	0.25592	131	130.87	131.13	0	0.0072742	0.0014087	NaN	25.399	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4304800	+		36468	17415	26696	26913							-0.10283685232366224
NEDYSFEV	8	Unmodified	_NEDYSFEV_					0	0	0			REV__ENSG00000105875|ENST00000354475|WDR91	REV__ENSG00000105875|ENST00000354475|WDR91	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	501.70618	1001.39781	-0.60991	-0.00030599	0.60183	0.00030194	-0.0080731	-4.0503E-06	501.7065246648975	130.77	0.25493	130.98	130.86	131.11	0.2142	-0.0072742	-0.00010364	NaN	25.399	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10420000	+		36469	17415	26696	26913							-0.10283685232366224
NEEAENLKKW	10	Unmodified	_NEEAENLKKW_					0	0	0			REV__ENST00000333942.10_1_17:30529870-30530925:+|nuORF	REV__ENST00000333942.10_1_17:30529870-30530925:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	420.3099060058594	3	420.878815	1259.61462	0.027202	1.1449E-05	0.82331	0.00034651	0.85051	0.00035796	420.8790956962368	47.74	0.60788	48.501	48.225	48.833	0.76128					16	11	2	0	0	0	0.91643	1	17954	17954		8.4443	4.3277	1	1814800	+		36470	23651	26697	26914	35476	35476					-0.004807096787999399
NEEARQAEM	9	Unmodified	_NEEARQAEM_					0	0	0			REV__ENSG00000113504|ENST00000264930|SLC12A7	REV__ENSG00000113504|ENST00000264930|SLC12A7	MSMS	A375_MHC_IP_R2	2	539.2074584960938	2	539.235113	1076.45567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.761	1	56.511	56.011	57.011	0.75015								0	0	0	0.15486	1	21068	21068		11.64	0	1		+		36471	17781	26698	26915	35477	35477					-0.07949746578583472
NEEDTLCFV	9	Carbamidomethyl (C)	_NEEDTLC(Carbamidomethyl (C))FV_	NEEDTLC(1)FV		NEEDTLC(48)FV		0	1	0		ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	MULTI-MSMS	A375_MHC_IP_R1	1	564.180419921875	2	563.739696	1125.46484	-0.28673	-0.00016164	-0.29041	-0.00016372	-0.57714	-0.00032536	563.7395137813336	72.49	0.91147	72.49	72.069	72.98	0					50	17	4	0	0	0	0.11296	1	26244	26244		48.346	16.04	1	9051800			36472	1436	26699	26916	35478	35478	8				-0.0928739801292977
NEEDTPTPGL	10	Unmodified	_NEEDTPTPGL_					0	0	0		ENSG00000115183|ENST00000263635|TANC1;nc|ENSG00000115183|Q9C0D5-2|TANC1;ENST00000470074.1_1_2:160076105-160087520:+|nuORF	ENSG00000115183|ENST00000263635|TANC1	ENSG00000115183|ENST00000263635|TANC1	MSMS	A375_MHC_IP_R2	2	536.70556640625	2	536.743293	1071.47203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.52	1	110.27	109.77	110.77	0.74684								0	0	0	0.15158	1	41331	41331		14.838	2.3067	1				36473	3279	26700	26917	35479	35479					-0.06084342140843546
NEEESTRTRWR	11	Unmodified	_NEEESTRTRWR_					0	0	0			REV__ENST00000379278.3_1_6:13470666-13486268:-|nuORF	REV__ENST00000379278.3_1_6:13470666-13486268:-|nuORF	MSMS	A375_MHC_IP_R1	1	488.4690856933594	3	488.571044	1462.6913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.587	1	50.587	50.087	51.087	0								0	0	0	0.16316	1	17927	17927		2.2527	1.0379	1		+		36474	24195	26701	26918	35480	35480					-0.021535181296258088
NEEESTRTRWR	11	Unmodified	_NEEESTRTRWR_					0	0	0			REV__ENST00000379278.3_1_6:13470666-13486268:-|nuORF	REV__ENST00000379278.3_1_6:13470666-13486268:-|nuORF	MSMS	A375_MHC_IP_R1	1	488.46923828125	3	488.571044	1462.6913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.524	1	59.524	59.024	60.024	0								0	0	0	0.16232	1	21412	21412		6.6235	5.2938	1		+		36475	24195	26701	26918	35481	35481					-0.021535181296258088
NEEGDTGNW	9	Unmodified	_NEEGDTGNW_					0	0	0		ENSG00000130749|ENST00000253048|ZC3H4	ENSG00000130749|ENST00000253048|ZC3H4	ENSG00000130749|ENST00000253048|ZC3H4	MULTI-MSMS	A375_MHC_IP_R2	2	511.1534729003906	2	511.19651	1020.37847	-1.1097	-0.0005673	-1.0756	-0.00054984	-2.1853	-0.0011171	511.19783328094945	34.135	0.61061	34.887	34.651	35.262	0.75225					39	11	4	0	0	0	0.6656	1	12429	12429		10.074	0.72649	1	20923000			36476	4277	26702	26919	35482	35482					-0.1309064152327437
NEEGEEEEI	9	Unmodified	_NEEGEEEEI_					0	0	0		tr|U7T5Y3|U7T5Y3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00129PE=4SV=1	tr|U7T5Y3|U7T5Y3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00129PE=4SV=1	tr|U7T5Y3|U7T5Y3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00129PE=4SV=1	MSMS	A375_MHC_IP_R1	1	359.7304992675781	3	359.812136	1076.41458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.593	1	18.593	18.093	19.093	0								0	0	0	0.15486	1	4440	4440		0.23584	0	1				36477	30037	26703	26920	35483	35483					-0.1205722913707632
NEEGFVRLY	9	Unmodified	_NEEGFVRLY_					0	0	0		ENSG00000143476|ENST00000366991|DTL;nc|ENSG00000143476|Q9NZJ0-2|DTL	ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	MULTI-SECPEP	A375_MHC_IP_R1	1	564.1399536132812	2	563.780013	1125.54547	-0.22877	-0.00012897	0.24765	0.00013962	0.01888	1.0644E-05	563.7801196012588	72.139	0.60782	72.139	71.866	72.474	0					22	11	3	0	0	0	0.37663	1	26322	26322		43.772	18.373	1	2548900			36478	5397	26704	26921	35484	35484					-0.012277489076950587
NEEGNTPLLF	10	Unmodified	_NEEGNTPLLF_					0	0	0		nc|ENSG00000187984|Q9H560|ANKRD19P;ENST00000473204.5_1_9:95571946-95584543:+|nuORF	nc|ENSG00000187984|Q9H560|ANKRD19P	nc|ENSG00000187984|Q9H560|ANKRD19P	MULTI-MSMS	A375_MHC_IP_R1	1	567.2395629882812	2	567.277303	1132.54005	-0.56707	-0.00032169	-0.30381	-0.00017235	-0.87089	-0.00049403	567.2771548289728	85.247	1.016	85.247	84.955	85.971	0					27	19	2	0	0	0	0.57505	1	31159	31159		22.736	3.4793	1	2841600			36479	12384	26705	26922	35485	35485					-0.020914724902013404
NEEGRGGNML	10	Unmodified	_NEEGRGGNML_					0	0	0		ENSG00000153339|ENST00000283351|TRAPPC8;nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	ENSG00000153339|ENST00000283351|TRAPPC8	ENSG00000153339|ENST00000283351|TRAPPC8	MSMS	A375_MHC_IP_R1	1	538.6798706054688	2	538.743105	1075.47166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.029	1	64.029	63.529	64.529	0								0	0	0	0.1524	1	23158	23158		13.042	0.51092	1				36480	6027	26706	26923	35486	35486					-0.06306040341678454
NEEHFRGQEF	10	Unmodified	_NEEHFRGQEF_					0	0	0		ENSG00000116984|ENST00000366577|MTR;nc|ENSG00000116984|Q99707-2|MTR	ENSG00000116984|ENST00000366577|MTR	ENSG00000116984|ENST00000366577|MTR	MULTI-MSMS	A375_MHC_IP_R1	1	647.1860961914062	2	646.786358	1291.55816	-0.46418	-0.00030022	0.070608	4.5668E-05	-0.39357	-0.00025456	646.7865302275538	27.254	0.40558	27.254	27.128	27.533	0					14	7	3	0	0	0	0.13045	1	8308	8308		57.108	20.601	1	3569900			36481	3448	26707	26924	35487	35487					-0.07595337515476785
NEEHFRGQEF	10	Unmodified	_NEEHFRGQEF_					0	0	0		ENSG00000116984|ENST00000366577|MTR;nc|ENSG00000116984|Q99707-2|MTR	ENSG00000116984|ENST00000366577|MTR	ENSG00000116984|ENST00000366577|MTR	MULTI-SECPEP	A375_MHC_IP_R1	1	431.92633056640625	3	431.526664	1291.55816	-0.24925	-0.00010756	-0.10824	-4.6707E-05	-0.35749	-0.00015426	431.5265721188481	27.262	0.4048	27.262	27.078	27.482	0					20	7	3	0	0	0	0.5901	1	8245	8245		37.771	24.899	1	15797000			36482	3448	26707	26924	35488	35488					-0.07595337515476785
NEEHFRGQEF	10	Unmodified	_NEEHFRGQEF_					0	0	0		ENSG00000116984|ENST00000366577|MTR;nc|ENSG00000116984|Q99707-2|MTR	ENSG00000116984|ENST00000366577|MTR	ENSG00000116984|ENST00000366577|MTR	MULTI-MSMS	A375_MHC_IP_R2	2	431.9264221191406	3	431.526664	1291.55816	-0.57689	-0.00024894	-0.13399	-5.7822E-05	-0.71088	-0.00030676	431.52657087316766	26.659	0.45909	27.319	27.109	27.568	0.65992					24	8	4	0	0	0	0.13881	1	9028	9028		62.869	47.33	1	12416000			36483	3448	26707	26924	35489	35489					-0.07595337515476785
NEEHFRGQEF	10	Unmodified	_NEEHFRGQEF_					0	0	0		ENSG00000116984|ENST00000366577|MTR;nc|ENSG00000116984|Q99707-2|MTR	ENSG00000116984|ENST00000366577|MTR	ENSG00000116984|ENST00000366577|MTR	MULTI-MSMS	A375_MHC_IP_R2	2	647.185302734375	2	646.786358	1291.55816	-1.0141	-0.00065592	-0.11329	-7.3272E-05	-1.1274	-0.00072919	646.7861747766049	26.678	0.30489	27.338	27.161	27.466	0.65992					11	5	3	0	0	0	0.061707	1	9078	9078		72.59	42.749	1	2342300			36484	3448	26707	26924	35490	35490					-0.07595337515476785
NEEILSMIY	9	Unmodified	_NEEILSMIY_					0	0	0			REV__ENST00000417282.1_1_7:56372411-56373020:-|nuORF	REV__ENST00000417282.1_1_7:56372411-56373020:-|nuORF	MSMS	A375_MHC_IP_R2	2	556.4839477539062	2	556.270632	1110.52671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.092	1	32.829	32.329	33.329	0.73692								0	0	0	0.15468	1	11386	11386		13.906	0	1		+		36485	19860	26708	26925	35491	35491					-0.02413046593778745
NEEKRNWEK	9	Unmodified	_NEEKRNWEK_					0	0	0			REV__ENST00000272647.9_1_2:128641813-128643454:-|nuORF	REV__ENST00000272647.9_1_2:128641813-128643454:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	411.2791748046875	3	411.538793	1231.59455	0.18626	7.6653E-05	-2.5142	-0.0010347	-2.3279	-0.00095802	411.53755898049985	23.071	0.15039	23.071	22.974	23.125	0					4	2	2	0	0	0	0.63749	1	6251	6251		20.581	0	1	916550	+		36486	23280	26709	26926	35492	35492					-0.011984606187752433
NEELATQLQQ	10	Unmodified	_NEELATQLQQ_					0	0	0		ENST00000555870.5_1_14:37739712-37970779:+|nuORF;nc|ENSG00000151338|Q8TD10-2|MIPOL1;ENSG00000151338|ENST00000684589|MIPOL1	ENST00000555870.5_1_14:37739712-37970779:+|nuORF	ENST00000555870.5_1_14:37739712-37970779:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	588.191162109375	2	587.290942	1172.56733	-0.59831	-0.00035138	-0.67458	-0.00039617	-1.2729	-0.00074755	587.290897581303	32.303	0.86526	33.039	32.755	33.62	0.73692					43	16	4	0	0	0	0.69695	1	11461	11461		13.615	2.1202	1	12904000			36487	5897	26710	26927	35493	35493					-0.012049889498030097
NEELLSTDF	9	Unmodified	_NEELLSTDF_					0	0	0			REV__nc|ENSG00000151422|P16591-2|FER	REV__nc|ENSG00000151422|P16591-2|FER	MULTI-MSMS	A375_MHC_IP_R1	1	535.22412109375	2	534.248212	1066.48187	-0.53458	-0.0002856	-2.9401	-0.0015708	-3.4747	-0.0018564	534.2483054918572	51.484	0.6605	51.484	51.168	51.829	0					30	12	3	0	0	0	0.67332	1	18327	18327		9.3831	0	1	5661500	+		36488	19751	26711	26928	35494	35494					-0.04871154135480538
NEEMITKTI	9	Unmodified	_NEEMITKTI_					0	0	0		ENST00000354752.5_1_9:99942307-99949763:-|nuORF	ENST00000354752.5_1_9:99942307-99949763:-|nuORF	ENST00000354752.5_1_9:99942307-99949763:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	540.1737060546875	2	539.776082	1077.53761	-0.7592	-0.0004098	-2.4865	-0.0013422	-3.2457	-0.001752	539.7748183125495	79.077	0.66	79.821	79.438	80.098	0.74474					17	12	2	0	0	0	0.3213	1	30040	30040		24.021	0	1	1980400			36489	10945	26712	26929	35495	35495					0.001943557804906959
NEERDGVRFSW	11	Unmodified	_NEERDGVRFSW_					0	0	0		ENSG00000100934|ENST00000307712|SEC23A;SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant;ENSG00000101310|ENST00000650089|SEC23B	ENSG00000100934|ENST00000307712|SEC23A;SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	466.1477966308594	3	465.553102	1393.63748	-0.24206	-0.00011269	-0.76544	-0.00035635	-1.0075	-0.00046904	465.5529668820975	55.194	0.40654	55.194	55.075	55.482	0					13	7	3	0	0	0	0.93193	1	19751	19751		16.137	9.9028	1	1462500			36490	2280;2234	26713	26930	35496	35496					-0.04359690561341267
NEERETGETNT	11	Unmodified	_NEERETGETNT_					0	0	0		tr|U7ST79|U7ST79_FUSNUPenicillin-bindingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01252PE=4SV=1	tr|U7ST79|U7ST79_FUSNUPenicillin-bindingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01252PE=4SV=1	tr|U7ST79|U7ST79_FUSNUPenicillin-bindingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01252PE=4SV=1	MSMS	A375_MHC_IP_R2	2	640.218994140625	2	640.273478	1278.5324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.097	1	62.84	62.34	63.34	0.74263								0	0	0	0.16203	1	23536	23536		8.1555	0	1				36491	29664	26714	26931	35497	35497					-0.09572276548419723
NEESIKGFY	9	Unmodified	_NEESIKGFY_					0	0	0			REV__ENST00000466598.5_1_3:183894781-183896942:+|nuORF	REV__ENST00000466598.5_1_3:183894781-183896942:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	544.2347412109375	2	543.758746	1085.50294	-0.53596	-0.00029143	-2.4716	-0.001344	-3.0076	-0.0016354	543.7572394683655	57.233	0.61185	57.233	56.855	57.467	0					13	11	2	0	0	0	0.12592	2	20507	20507;20578		46.021	11.619	1	1223700	+		36492	20202	26715	26932	35498;35499	35498					-0.03639144035946629
NEESIKGFY	9	Unmodified	_NEESIKGFY_					0	0	0			REV__ENST00000466598.5_1_3:183894781-183896942:+|nuORF	REV__ENST00000466598.5_1_3:183894781-183896942:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	544.2347412109375	2	543.758746	1085.50294	-0.53596	-0.00029143	-2.4716	-0.001344	-3.0076	-0.0016354	543.7572394683655	57.233	0.61185	57.233	56.855	57.467	0					13	11	2	0	0	0	0.20567	1	20507	20507		46.021	11.619	1	1223700	+		36493	20202	26715	26932	35500	35500					-0.03639144035946629
NEEYEEDR	8	Unmodified	_NEEYEEDR_					0	0	0			REV__nc|ENSG00000205189|Q96DT7-4|ZBTB10	REV__nc|ENSG00000205189|Q96DT7-4|ZBTB10	MULTI-MSMS	A375_MHC_IP_R1	1	542.6142578125	2	542.2149	1082.41525	-0.7383	-0.00040032	0.3637	0.00019721	-0.37459	-0.00020311	542.214823817363	40.018	0.81454	40.018	39.643	40.458	0					35	15	3	0	0	0	0.75805	1	13691	13691		18.135	1.1927	1	10857000	+		36494	22562	26716	26933	35501	35501					-0.12266389697379054
NEEYEEDR	8	Unmodified	_NEEYEEDR_					0	0	0			REV__nc|ENSG00000205189|Q96DT7-4|ZBTB10	REV__nc|ENSG00000205189|Q96DT7-4|ZBTB10	MULTI-MSMS	A375_MHC_IP_R2	2	542.6143188476562	2	542.2149	1082.41525	-0.90858	-0.00049264	0.16692	9.0508E-05	-0.74165	-0.00040214	542.2146862133035	39.364	0.66217	40.138	39.76	40.422	0.77451					31	12	3	0	0	0	0.75805	1	14518	14518		18.135	1.1927	1	6197700	+		36495	22562	26716	26933	35502	35502					-0.12266389697379054
NEFCERFFYY	10	Unmodified	_NEFCERFFYY_					0	0	0		SLC15A2|p.S59F|1|0.32|ENSG00000163406|chr3:121896476-121896476|C/T|missense_variant;SLC15A1|p.S29F|1|0.23|ENSG00000088386|chr13:98726385-98726385|G/A|missense_variant	SLC15A2|p.S59F|1|0.32|ENSG00000163406|chr3:121896476-121896476|C/T|missense_variant	SLC15A2|p.S59F|1|0.32|ENSG00000163406|chr3:121896476-121896476|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	709.8963012695312	2	709.297713	1416.58087	-0.8121	-0.00057602	-4.4223	-0.0031367	-5.2344	-0.0037128	709.2940573073685	106.9	0.20238	107.66	107.55	107.75	0.75977					5	3	2	0	0	0	0.9269	1	40413	40413		6.7232	0.99131	1	1783200			36496	29166	26717	26934	35503	35503					-0.11075454442220689
NEFDWQQL	8	Unmodified	_NEFDWQQL_					0	0	0			REV__ENSG00000081320|ENST00000263955|STK17B	REV__ENSG00000081320|ENST00000263955|STK17B	MULTI-MSMS	A375_MHC_IP_R1	1	540.7078247070312	2	540.243264	1078.47197	-0.58555	-0.00031634	-0.05478	-2.9594E-05	-0.64033	-0.00034593	540.2431884827531	101.16	0.65883	101.16	100.89	101.55	0					18	12	2	0	0	0	0.76654	1	37190	37190		15.847	1.9411	1	543230	+		36497	16774	26718	26935	35504	35504					-0.06412297350175322
NEFHRIRD	8	Unmodified	_NEFHRIRD_					0	0	0			REV__HEPACAM|p.L101H|1|0.07|ENSG00000165478|chr11:124924853-124924853|A/T|missense_variant	REV__HEPACAM|p.L101H|1|0.07|ENSG00000165478|chr11:124924853-124924853|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	543.1686401367188	2	543.775597	1085.53664	-0.74995	-0.00040781	0.94721	0.00051507	0.19726	0.00010726	543.7757401626725	70.05	0.25246	70.784	70.591	70.844	0.73421					6	4	2	0	0	0	0.8957	1	26574	26574		15.847	0	1	1570000	+		36498	26729	26719	26936	35505	35505					-0.002706777535195215
NEFIDASRLVY	11	Unmodified	_NEFIDASRLVY_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-3|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	A375_MHC_IP_R1	1	664.23779296875	2	663.838059	1325.66157	-0.55848	-0.00037074	-0.27695	-0.00018385	-0.83543	-0.00055459	663.8376599443317	95.959	0.60816	95.959	95.614	96.223	0					21	11	3	0	0	0	0.065406	2	35288	35288;35298		76.416	42.971	1	2725100			36499	1184;1400	26720	26937	35506;35507	35506					0.011761498723444674
NEFIDASRLVY	11	Unmodified	_NEFIDASRLVY_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-3|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	A375_MHC_IP_R2	2	664.238037109375	2	663.838059	1325.66157	-0.63758	-0.00042325	-0.18696	-0.00012411	-0.82453	-0.00054736	663.8379015625734	95.25	0.66325	96.001	95.735	96.398	0.75045					19	12	3	0	0	0	0.024878	2	36231	36226;36231		84.738	51.293	1	2533700			36500	1184;1400	26720	26937	35508;35509	35509					0.011761498723444674
NEFLDAEGRTW	11	Unmodified	_NEFLDAEGRTW_					0	0	0		nc|ENSG00000182013|Q86V59-2|PNMA8A;ENSG00000182013|ENST00000313683|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	MULTI-MSMS	A375_MHC_IP_R1	1	669.7091674804688	2	669.309666	1336.60478	-0.62334	-0.00041721	0.33348	0.0002232	-0.28986	-0.00019401	669.309762141536	77.261	0.55628	77.261	77.083	77.639	0					26	10	4	0	0	0	0.00093561	1	28188	28188		104.94	75.103	1	5039100			36501	8372	26721	26938	35510	35510					-0.05005897684191041
NEFLDAEGRTW	11	Unmodified	_NEFLDAEGRTW_					0	0	0		nc|ENSG00000182013|Q86V59-2|PNMA8A;ENSG00000182013|ENST00000313683|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	MULTI-MSMS	A375_MHC_IP_R2	2	669.7091674804688	2	669.309666	1336.60478	-0.77102	-0.00051605	0.054825	3.6695E-05	-0.7162	-0.00047936	669.3095208799865	76.668	0.60976	77.409	77.095	77.705	0.74052					25	11	3	0	0	0	0.045151	1	29085	29085		80.24	58.649	1	4709600			36502	8372	26721	26938	35511	35511					-0.05005897684191041
NEFLLPPVF	9	Unmodified	_NEFLLPPVF_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-MSMS	A375_MHC_IP_R2	2	538.7262573242188	2	538.294768	1074.57498	-0.78356	-0.00042179	-0.22674	-0.00012205	-1.0103	-0.00054384	538.2942279880792	133.5	0.76028	133.67	133.45	134.21	0.16487					25	14	3	0	0	0	0.11715	1	52488	52488		47.594	11.467	1	1972900			36503	3732	26722	26939	35512	35512					0.04067815108442119
NEFNRFNKI	9	Unmodified	_NEFNRFNKI_					0	0	0			REV__tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1	REV__tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	591.1561889648438	2	591.306729	1180.59891	-0.34177	-0.00020209	0.52224	0.0003088	0.18047	0.00010671	591.307176874876	40.844	0.40416	40.844	40.559	40.963	0					10	7	2	0	0	0	0.65246	1	13988	13988		15.847	1.9411	1	1584500	+		36504	28465	26723	26940	35513	35513					0.015830485948072237
NEFPEPIKL	9	Unmodified	_NEFPEPIKL_					0	0	0		ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	MULTI-MSMS	A375_MHC_IP_R1	1	544.194580078125	2	543.795132	1085.57571	-0.77552	-0.00042172	-0.024544	-1.3347E-05	-0.80006	-0.00043507	543.7952203626133	84.981	3.6088	84.981	84.596	88.205	0					193	70	4	0	0	0	0.0012561	1	31099	31099		151.48	79.558	1	1033099999.9999999			36505	1621	26724	26941	35514	35514					0.036346097574551095
NEFPEPIKL	9	Unmodified	_NEFPEPIKL_					0	0	0		ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	MULTI-MSMS	A375_MHC_IP_R2	2	543.700439453125	2	543.795132	1085.57571	-0.72717	-0.00039543	-0.10741	-5.8408E-05	-0.83458	-0.00045384	543.795161877721	84.206	3.1077	84.946	84.611	87.719	0.73962					146	60	3	0	0	0	0.0016844	3	32011	31950;32011;32379		176.43	103.46	1	1117700000			36506	1621	26724	26941	35515;35516;35517	35516					0.036346097574551095
NEFPEPIKL	9	Unmodified	_NEFPEPIKL_					0	0	0		ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	MULTI-SECPEP	A375_MHC_IP_R2	2	1086.631591796875	1	1086.58299	1085.57571	0.17478	0.00018991	-0.41997	-0.00045633	-0.24519	-0.00026642	1086.5824193065787	84.183	0.91492	84.923	84.663	85.578	0.73962					47	17	4	0	0	0	0.75475	1	32216	32216		21.59	21.59	1	59007000			36507	1621	26724	26941	35518	35518					0.036346097574551095
NEFPEPIKL	9	Unmodified	_NEFPEPIKL_					0	0	0		ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	MULTI-MATCH	A375_MHC_IP_R1	1		1	1086.58299	1085.57571	-0.098886	-0.00010745	0.0064355	6.9927E-06	-0.092451	-0.00010046	1086.5828202762711	84.982	0.86706	84.982	84.697	85.565	0	0.029619	0.00012375	NaN	21.59	48	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69361000			36508	1621	26724	26941							0.036346097574551095
NEFPNIGSW	9	Unmodified	_NEFPNIGSW_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	A375_MHC_IP_R1	1	532.6454467773438	2	532.245806	1062.47706	-0.29745	-0.00015832	0.13222	7.0373E-05	-0.16523	-8.7945E-05	532.2458375891341	116.11	0.86536	116.11	115.73	116.6	0					40	16	3	0	0	0	0.0020209	1	42572	42572		143.91	93.976	1	11781000			36509	4093	26725	26942	35519	35519					-0.05167993487566491
NEFPNIGSW	9	Unmodified	_NEFPNIGSW_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	A375_MHC_IP_R1	1	1063.5960693359375	1	1063.48434	1062.47706	0.46107	0.00049034	1.9453	0.0020688	2.4064	0.0025592	1063.4860433201425	116.16	0.71239	116.16	115.78	116.5	0					23	13	2	0	0	0	0.26374	1	42729	42729		40.725	21.468	1	5625800			36510	4093	26725	26942	35520	35520					-0.05167993487566491
NEFPNIGSW	9	Unmodified	_NEFPNIGSW_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	A375_MHC_IP_R2	2	532.6453857421875	2	532.245806	1062.47706	-0.51222	-0.00027263	-0.35717	-0.0001901	-0.86939	-0.00046273	532.2455610067119	115.44	0.968	116.13	115.63	116.59	0.68999					43	18	3	0	0	0	0.0096967	1	43440	43440		110.79	74.666	1	11905000			36511	4093	26725	26942	35521	35521					-0.05167993487566491
NEFPVFKAD	9	Unmodified	_NEFPVFKAD_					0	0	0		CSE1L|p.L480F|1|0.4|ENSG00000124207|chr20:49078578-49078578|C/T|missense_variant	CSE1L|p.L480F|1|0.4|ENSG00000124207|chr20:49078578-49078578|C/T|missense_variant	CSE1L|p.L480F|1|0.4|ENSG00000124207|chr20:49078578-49078578|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	534.16357421875	2	533.763832	1065.51311	-0.66489	-0.00035489	0.38744	0.0002068	-0.27745	-0.00014809	533.7638735099738	73.939	1.3689	73.939	73.539	74.908	0					42	26	3	0	0	0	0.31606	1	26891	26891		26.268	4.7312	1	4726700			36512	669	26726	26943	35522	35522					-0.017025363107222802
NEFPVPEQF	9	Unmodified	_NEFPVPEQF_					0	0	0		ENST00000461993.1_1_1:40535258-40537202:+|nuORF;nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1;ENST00000494114.1_1_1:40536414-40537202:+|nuORF;ENST00000417455.1_1_10:44100293-44100833:-|nuORF	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	554.1615600585938	2	553.761289	1105.50803	-0.52334	-0.0002898	0.13712	7.5934E-05	-0.38621	-0.00021387	553.7612975210905	103.89	0.6618	103.89	103.52	104.18	0					27	12	3	0	0	0	0.0090873	1	38103	38103		100.71	50.776	1	4931500			36513	4316	26727	26944	35523	35523					-0.04050840173340475
NEFPVPEQF	9	Unmodified	_NEFPVPEQF_					0	0	0		ENST00000461993.1_1_1:40535258-40537202:+|nuORF;nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1;ENST00000494114.1_1_1:40536414-40537202:+|nuORF;ENST00000417455.1_1_10:44100293-44100833:-|nuORF	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	ENST00000461993.1_1_1:40535258-40537202:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	554.160400390625	2	553.761289	1105.50803	-0.75866	-0.00042012	-0.45671	-0.00025291	-1.2154	-0.00067303	553.7609990289615	103.2	0.61031	103.96	103.63	104.24	0.76428					28	11	3	0	0	0	0.0093155	1	39051	39051		104.48	54.551	1	5718000			36514	4316	26727	26944	35524	35524					-0.04050840173340475
NEFRASFNHF	10	Unmodified	_NEFRASFNHF_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000077522|P35609-2|ACTN2;ENSG00000077522|ENST00000366578|ACTN2;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	A375_MHC_IP_R1	1	423.9318542480469	3	423.53175	1267.57342	0.04737	2.0063E-05	0.27365	0.0001159	0.32102	0.00013596	423.53180362368846	51.296	0.5063	51.296	51.068	51.575	0					17	9	2	0	0	0	0.069075	1	18216	18216		70.496	58.978	1	5594100			36515	1529;9835	26728	26945	35525	35525					-0.049664259276369194
NEFRASFNHF	10	Unmodified	_NEFRASFNHF_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000077522|P35609-2|ACTN2;ENSG00000077522|ENST00000366578|ACTN2;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	A375_MHC_IP_R2	2	423.93170166015625	3	423.53175	1267.57342	-0.27702	-0.00011733	0.1644	6.963E-05	-0.11262	-4.7697E-05	423.5317984503431	50.633	0.65869	51.387	51.006	51.665	0.75406					17	12	2	0	0	0	0.027029	1	19028	19028		82.445	68.926	1	4314800			36516	1529;9835	26728	26945	35526	35526					-0.049664259276369194
NEFSQIFQL	9	Unmodified	_NEFSQIFQL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	A375_MHC_IP_R2	2	563.6822509765625	2	563.282389	1124.55022	-0.5783	-0.00032574	0.097409	5.4869E-05	-0.48089	-0.00027088	563.2823328363851	129.25	0.25247	129.49	129.31	129.57	0.23946					7	4	2	0	0	0	0.047602	1	50822	50822		65.235	9.058	1	5851900			36517	1768	26729	26946	35527	35527					-0.007068647649475679
NEFSQIFQL	9	Unmodified	_NEFSQIFQL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MATCH	A375_MHC_IP_R1	1		2	563.282389	1124.55022	-0.61314	-0.00034537	0.22747	0.00012813	-0.38566	-0.00021724	563.7839167060348	129.47	0.20256	129.47	129.35	129.55	0	-0.0082492	8.445E-05	NaN	65.235	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3887600			36518	1768	26729	26946							-0.007068647649475679
NEFTHLEF	8	Unmodified	_NEFTHLEF_					0	0	0		ENSG00000111110|ENST00000228705|PPM1H;PPM1H|p.R337K|1|0.09|ENSG00000111110|chr12:62720234-62720234|C/T|missense_variant	ENSG00000111110|ENST00000228705|PPM1H	ENSG00000111110|ENST00000228705|PPM1H	MULTI-MSMS	A375_MHC_IP_R1	1	518.7001953125	2	518.740357	1035.46616	-0.22286	-0.00011561	-0.59323	-0.00030773	-0.81608	-0.00042334	518.7401009801022	48.17	0.6062	48.17	47.87	48.476	0					27	11	3	0	0	0	0.77515	1	17038	17038		12.532	3.7861	1	11412000			36519	2965	26730	26947	35528	35528					-0.05015395861846628
NEFTHLEF	8	Unmodified	_NEFTHLEF_					0	0	0		ENSG00000111110|ENST00000228705|PPM1H;PPM1H|p.R337K|1|0.09|ENSG00000111110|chr12:62720234-62720234|C/T|missense_variant	ENSG00000111110|ENST00000228705|PPM1H	ENSG00000111110|ENST00000228705|PPM1H	MULTI-MSMS	A375_MHC_IP_R2	2	519.670654296875	2	518.740357	1035.46616	-0.52792	-0.00027385	-0.26309	-0.00013647	-0.79101	-0.00041033	518.7402037212912	47.405	0.51056	48.167	47.867	48.378	0.76128					24	9	3	0	0	0	0.77562	1	17830	17830		10.824	3.5347	1	12072000			36520	2965	26730	26947	35529	35529					-0.05015395861846628
NEFTITGSTY	10	Unmodified	_NEFTITGSTY_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;ENST00000550262.1_1_12:110770401-110771957:+|nuORF	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	A375_MHC_IP_R1	1	566.6962890625	2	566.761486	1131.50842	-0.25268	-0.00014321	-0.21594	-0.00012238	-0.46862	-0.00026559	566.7611008431832	79.188	0.56087	79.188	78.909	79.47	0					15	10	2	0	0	0	0.49514	1	28955	28955		28.495	11.552	1	1895700			36521	7877	26731	26948	35530	35530					-0.052074652441206126
NEFTITGSTY	10	Unmodified	_NEFTITGSTY_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;ENST00000550262.1_1_12:110770401-110771957:+|nuORF	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	A375_MHC_IP_R2	2	567.161376953125	2	566.761486	1131.50842	-0.34355	-0.00019471	-0.80428	-0.00045583	-1.1478	-0.00065054	566.7613819220351	78.559	0.50699	79.304	79.084	79.591	0.74473					15	9	2	0	0	0	0.21617	1	29849	29849		47.594	23.805	1	1841400			36522	7877	26731	26948	35531	35531					-0.052074652441206126
NEFVLTTKNY	10	Unmodified	_NEFVLTTKNY_					0	0	0		ENSG00000109606|ENST00000336812|DHX15;ENST00000510645.5_1_4:24519211-24534570:-|nuORF;ENST00000512903.1_1_4:24529549-24534804:-|nuORF;ENST00000508032.5_1_4:24529549-24538851:-|nuORF	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	A375_MHC_IP_R1	1	615.2139282226562	2	614.814053	1227.61355	-0.32735	-0.00020126	-0.27944	-0.0001718	-0.60679	-0.00037306	614.8138065396303	59.524	0.50771	59.524	59.194	59.701	0					16	9	2	0	0	0	0.016155	1	21416	21416		121.5	88.718	1	3280600			36523	2877	26732	26949	35532	35532					0.008850759522829321
NEFVLTTKNY	10	Unmodified	_NEFVLTTKNY_					0	0	0		ENSG00000109606|ENST00000336812|DHX15;ENST00000510645.5_1_4:24519211-24534570:-|nuORF;ENST00000512903.1_1_4:24529549-24534804:-|nuORF;ENST00000508032.5_1_4:24529549-24538851:-|nuORF	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	A375_MHC_IP_R2	2	615.2134399414062	2	614.814053	1227.61355	-0.94269	-0.00057958	-0.34254	-0.0002106	-1.2852	-0.00079018	614.8138091910268	58.716	0.45654	59.464	59.235	59.691	0.74714					13	8	2	0	0	0	0.028865	1	22227	22227		93.938	61.152	1	2787600			36524	2877	26732	26949	35533	35533					0.008850759522829321
NEFVRQLEF	9	Unmodified	_NEFVRQLEF_					0	0	0		ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	MULTI-MSMS	A375_MHC_IP_R1	1	591.7009887695312	2	591.301113	1180.58767	-0.36	-0.00021287	-1.1274	-0.00066661	-1.4874	-0.00087948	591.3008604235157	83.406	0.50948	83.406	83.226	83.736	0					18	9	3	0	0	0	0.02331	1	30535	30535		80.676	44.17	1	2830800			36525	8266	26733	26950	35534	35534					0.004602265006496964
NEFVRQLEF	9	Unmodified	_NEFVRQLEF_					0	0	0		ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	MULTI-MSMS	A375_MHC_IP_R2	2	591.7005615234375	2	591.301113	1180.58767	-0.57828	-0.00034194	-0.21677	-0.00012817	-0.79504	-0.00047011	591.30084193044	82.687	0.50418	83.43	83.144	83.648	0.74293					18	9	3	0	0	0	0.02331	1	31394	31394		80.676	36.904	1	3130200			36526	8266	26733	26950	35535	35535					0.004602265006496964
NEGDCEWQRS	10	Unmodified	_NEGDCEWQRS_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MSMS	A375_MHC_IP_R1	1	612.1808471679688	2	612.240926	1222.4673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.717	1	84.717	84.217	85.217	0								0	0	0	0.15549	1	31038	31038		2.9952	0.93549	1		+		36527	18241	26734	26951	35536	35536					-0.1350354955527564
NEGDLHDLL	9	Unmodified	_NEGDLHDLL_					0	0	0			REV__ENSG00000010292|ENST00000315579|NCAPD2	REV__ENSG00000010292|ENST00000315579|NCAPD2	MULTI-SECPEP	A375_MHC_IP_R1	1	512.6503295898438	2	513.248546	1024.48254	-0.48441	-0.00024862	-0.070759	-3.6317E-05	-0.55517	-0.00028494	513.2484966812586	34.026	0.30606	34.026	33.848	34.154	0					7	5	2	0	0	0	0.73363	1	11092	11092		3.5965	0.31518	1	1955100	+		36528	16192	26735	26952	35537	35537					-0.028723146957418066
NEGDQVVLI	9	Unmodified	_NEGDQVVLI_					0	0	0		ENSG00000088179|ENST00000263708|PTPN4	ENSG00000088179|ENST00000263708|PTPN4	ENSG00000088179|ENST00000263708|PTPN4	MULTI-SECPEP	A375_MHC_IP_R2	2	493.17852783203125	2	493.761289	985.508025	-0.52652	-0.00025997	1.5126	0.00074685	0.98605	0.00048687	493.76194025882216	80.444	0.50616	81.188	80.91	81.416	0.74474					13	9	2	0	0	0	0.53748	1	30467	30467		30.637	5.2372	1	1437100			36529	1884	26736	26953	35538	35538					0.014691598266836081
NEGQNCNGRQY	11	Unmodified	_NEGQNCNGRQY_					0	0	0			REV__MBNL1|p.R195Q|1|0.33|ENSG00000152601|chr3:152445316-152445316|G/A|missense_variant	REV__MBNL1|p.R195Q|1|0.33|ENSG00000152601|chr3:152445316-152445316|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	640.9896240234375	2	641.7651	1281.51565	-0.91617	-0.00058796	2.2923	0.0014711	1.3761	0.00088314	641.7669114879243	62.181	0.45723	62.924	62.673	63.13	0.74263					12	8	2	0	0	0	0.99227	1	23581	23581		2.9952	1.151	1	662000	+		36530	26994	26737	26954	35539	35539					-0.11385055915366138
NEGQNCNGRQY	11	Unmodified	_NEGQNCNGRQY_					0	0	0			REV__MBNL1|p.R195Q|1|0.33|ENSG00000152601|chr3:152445316-152445316|G/A|missense_variant	REV__MBNL1|p.R195Q|1|0.33|ENSG00000152601|chr3:152445316-152445316|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	641.7651	1281.51565	-0.44345	-0.00028459	2.351	0.0015088	1.9075	0.0012242	641.766642282246	62.624	0.40941	62.624	62.403	62.813	0	-0.14988	2.7648E-05	NaN	2.9952	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1085000	+		36531	26994	26737	26954							-0.11385055915366138
NEGQTALHY	9	Unmodified	_NEGQTALHY_					0	0	0		ENSG00000230124|ENST00000367595|ACBD6	ENSG00000230124|ENST00000367595|ACBD6	ENSG00000230124|ENST00000367595|ACBD6	MULTI-MSMS	A375_MHC_IP_R1	1	516.6624145507812	2	516.740888	1031.46722	-0.89324	-0.00046157	-0.12703	-6.5643E-05	-1.0203	-0.00052722	516.7408095858351	29.874	0.39675	29.874	29.703	30.099	0					13	7	2	0	0	0	0.035419	1	9375	9375		70.332	26.56	1	30160000			36532	9714	26738	26955	35540	35540					-0.047251814929495595
NEGQTALHY	9	Unmodified	_NEGQTALHY_					0	0	0		ENSG00000230124|ENST00000367595|ACBD6	ENSG00000230124|ENST00000367595|ACBD6	ENSG00000230124|ENST00000367595|ACBD6	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1400146484375	2	516.740888	1031.46722	-1.6369	-0.00084584	0.32986	0.00017045	-1.307	-0.00067539	516.7410554069489	29.219	0.5558	29.918	29.73	30.286	0.69872					24	10	3	0	0	0	0.011405	1	10181	10181		110.67	68.835	1	23150000			36533	9714	26738	26955	35541	35541					-0.047251814929495595
NEGRLYRGY	9	Unmodified	_NEGRLYRGY_					0	0	0		ENST00000295087.12_1_2:152657041-152657143:-|nuORF	ENST00000295087.12_1_2:152657041-152657143:-|nuORF	ENST00000295087.12_1_2:152657041-152657143:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	563.669189453125	2	564.283254	1126.55196	-0.39888	-0.00022508	-1.0113	-0.00057068	-1.4102	-0.00079576	564.2825826529577	84.377	0.81199	85.113	84.762	85.574	0.73602					20	15	2	0	0	0	0.73363	1	32024	32024		3.5965	3.5965	1	1792600			36534	10491	26739	26956	35542	35542					-0.00625810956330497
NEGSYDRPQDK	11	Unmodified	_NEGSYDRPQDK_					0	0	0			REV__ENSG00000204920|ENST00000270014|ZNF155	REV__ENSG00000204920|ENST00000270014|ZNF155	MSMS	A375_MHC_IP_R1	1	654.7450561523438	2	654.79438	1307.57421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.102	1	33.102	32.602	33.602	0								0	0	0	0.16279	1	10768	10768		4.1895	0.59301	1		+		36535	22548	26740	26957	35543	35543					-0.06727676069249355
NEGVVDHQT	9	Unmodified	_NEGVVDHQT_					0	0	0		nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400	nc|ENSG00000183495|Q96L91-4|EP400	nc|ENSG00000183495|Q96L91-4|EP400	MULTI-SECPEP	A375_MHC_IP_R2	2	499.9826354980469	2	499.73052	997.446488	-1.0131	-0.00050629	1.0986	0.000549	0.085461	4.2708E-05	500.23248048154176	25.764	0.50896	26.424	26.144	26.653	0.65992					14	9	2	0	0	0	0.76452	1	8736	8736		8.1555	1.4324	1	1527200			36536	8499	26741	26958	35544	35544					-0.05233771872622128
NEGYIKKLL	9	Unmodified	_NEGYIKKLL_					0	0	0		nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B;nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	A375_MHC_IP_R1	1	360.2815856933594	3	359.881608	1076.623	0.1487	5.3513E-05	1.4431	0.00051934	1.5918	0.00057285	359.88211331567305	50.917	1.4254	50.917	49.845	51.27	0					44	27	3	0	0	0	0.34064	1	18041	18041		20.581	13.479	1	4399800			36537	2219;10008	26742	26959	35545	35545					0.08774889028472899
NEGYIKKLL	9	Unmodified	_NEGYIKKLL_					0	0	0		nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B;nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-SECPEP	A375_MHC_IP_R1	1	538.712158203125	2	539.318774	1076.623	-0.62805	-0.00033872	0.59208	0.00031932	-0.035962	-1.9395E-05	539.3189929351478	50.887	1.0699	50.887	49.998	51.068	0					26	20	2	0	0	0	0.14572	1	18052	18052		53.833	23.196	1	3511200			36538	2219;10008	26742	26959	35546	35546					0.08774889028472899
NEGYIKKLL	9	Unmodified	_NEGYIKKLL_					0	0	0		nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B;nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	A375_MHC_IP_R2	2	360.28155517578125	3	359.881608	1076.623	-0.45031	-0.00016206	1.1333	0.00040785	0.68299	0.0002458	359.8818903116253	49.901	0.71134	50.656	50.244	50.955	0.75406					30	13	3	0	0	0	0.19747	1	18747	18747		29.437	15.032	1	5120100			36539	2219;10008	26742	26959	35547	35547					0.08774889028472899
NEGYIKKLL	9	Unmodified	_NEGYIKKLL_					0	0	0		nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B;nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-SECPEP	A375_MHC_IP_R2	2	539.7182006835938	2	539.318774	1076.623	-1.1115	-0.00059943	0.28142	0.00015178	-0.83004	-0.00044766	539.3188213930654	49.87	0.91304	50.625	49.941	50.854	0.75406					25	17	2	0	0	0	0.16595	1	18770	18770		61.602	32.52	1	3134100			36540	2219;10008	26742	26959	35548	35548					0.08774889028472899
NEHAPAYSY	9	Unmodified	_NEHAPAYSY_					0	0	0		nc|ENSG00000144642|Q6XE24-3|RBMS3;nc|ENSG00000144642|Q6XE24-4|RBMS3;nc|ENSG00000144642|Q6XE24-5|RBMS3;nc|ENSG00000144642|Q6XE24-2|RBMS3;ENSG00000144642|ENST00000383767|RBMS3	nc|ENSG00000144642|Q6XE24-3|RBMS3	nc|ENSG00000144642|Q6XE24-3|RBMS3	MULTI-SECPEP	A375_MHC_IP_R2	2	526.4385986328125	2	526.227613	1050.44067	-0.49717	-0.00026163	2.3579	0.0012408	1.8607	0.00097914	526.2273845634437	27.118	0.46016	27.797	27.587	28.047	0.67857					22	8	4	0	0	0	0.59614	1	9280	9280		22.658	11.834	1	2133800			36541	5499	26743	26960	35549	35549					-0.08252870384285416
NEHDLLKLKKF	11	Unmodified	_NEHDLLKLKKF_					0	0	0		ENSG00000119541|ENST00000238497|VPS4B	ENSG00000119541|ENST00000238497|VPS4B	ENSG00000119541|ENST00000238497|VPS4B	MULTI-SECPEP	A375_MHC_IP_R1	1	463.00421142578125	3	462.269755	1383.78744	0.029381	1.3582E-05	0.14432	6.6716E-05	0.1737	8.0298E-05	462.60413727564253	38.755	0.40639	38.755	38.526	38.933	0					13	7	2	0	0	0	0.99581	1	13216	13216		0.84494	0	1	3587600			36542	3601	26744	26961	35550	35550					0.11089281448403199
NEHDYLLS	8	Unmodified	_NEHDYLLS_					0	0	0			REV__ENSG00000139618|ENST00000380152|BRCA2	REV__ENSG00000139618|ENST00000380152|BRCA2	MULTI-SECPEP	A375_MHC_IP_R1	1	495.6867370605469	2	495.729989	989.445425	-0.50625	-0.00025096	-0.20985	-0.00010403	-0.7161	-0.00035499	495.7300255285717	65.591	0.56268	65.591	65.257	65.819	0					16	10	2	0	0	0	0.96266	1	23812	23812		7.2892	0	1	1820300	+		36543	19166	26745	26962	35551	35551					-0.049719862415145144
NEHMTNSTMS	10	Unmodified	_NEHMTNSTMS_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MSMS	A375_MHC_IP_R2	2	576.1901245117188	2	576.22643	1150.43831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.044	1	78.787	78.287	79.287	0.74293								0	0	0	0.15435	1	29638	29638		6.7232	1.4925	1				36544	5023	26746	26963	35552	35552					-0.13089410175916782
NEHTLRIY	8	Unmodified	_NEHTLRIY_					0	0	0		nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;ENST00000563542.5_1_15:72185266-72338904:-|nuORF;nc|ENSG00000066933|B2RTY4-3|MYO9A;MYO9A|p.N791Kfs*4|1|0.35|ENSG00000066933|chr15:71938857-71938858|-/T|frameshift_variant	nc|ENSG00000066933|B2RTY4-5|MYO9A	nc|ENSG00000066933|B2RTY4-5|MYO9A	MULTI-SECPEP	A375_MHC_IP_R2	2	522.979248046875	2	523.274898	1044.53524	-1.1892	-0.0006223	1.1137	0.00058277	-0.075546	-3.9531E-05	523.7772183950507	36.938	0.50707	37.709	37.461	37.968	0.7709					23	9	3	0	0	0	0.972	1	13580	13580		1.8442	0	1	6807300			36545	1423	26747	26964	35553	35553					0.014756881577113745
NEHVKTDW	8	Unmodified	_NEHVKTDW_					0	0	0		ENST00000593832.1_1_19:17691448-17692250:+|nuORF;ENSG00000130309|ENST00000252599|COLGALT1	ENST00000593832.1_1_19:17691448-17692250:+|nuORF	ENST00000593832.1_1_19:17691448-17692250:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	514.9249267578125	2	514.743431	1027.47231	-1.0334	-0.00053192	-0.66312	-0.00034134	-1.6965	-0.00087325	514.7434872531841	58.09	0.35237	58.839	58.679	59.032	0.74894					9	6	2	0	0	0	0.94479	1	22047	22047		4.756	0	1	852370			36546	4235	26748	26965	35554	35554					-0.04032877630334042
NEHWTPCI	8	Unmodified	_NEHWTPCI_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-SECPEP	A375_MHC_IP_R1	1	500.62109375	2	500.221277	998.428001	-0.22981	-0.00011496	0.25368	0.0001269	0.023871	1.1941E-05	500.22150686439596	51.536	0.45664	51.536	51.322	51.778	0					19	8	3	0	0	0	0.97144	1	18294	18294		5.2307	0.90143	1	3618700			36547	4172	26749	26966	35555	35555					-0.07127605048185615
NEHWTPCI	8	Unmodified	_NEHWTPCI_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MATCH	A375_MHC_IP_R2	2		2	500.221277	998.428001	-0.67004	-0.00033517	0.36861	0.00018439	-0.30143	-0.00015078	500.22147905960054	50.733	0.45387	51.488	51.311	51.765	0.75406	-0.024258	5.3615E-05	NaN	5.2307	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3823100			36548	4172	26749	26966							-0.07127605048185615
NEICKHFALQP	11	Unmodified	_NEICKHFALQP_					0	0	0		THSD7B|p.E160K|2|0.21|ENSG00000144229|chr2:137056758-137056758|G/A|missense_variant	THSD7B|p.E160K|2|0.21|ENSG00000144229|chr2:137056758-137056758|G/A|missense_variant	THSD7B|p.E160K|2|0.21|ENSG00000144229|chr2:137056758-137056758|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	650.1635131835938	2	650.329347	1298.64414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.081	1	48.081	47.581	48.581	0								0	0	0	0.15971	1	16942	16942		14.405	0.49933	1				36549	29339	26750	26967	35556	35556					0.006765310656646761
NEIDDMQVF	9	Oxidation (M)	_NEIDDM(Oxidation (M))QVF_		NEIDDM(1)QVF		NEIDDM(93)QVF	0	0	1		nc|ENSG00000146122|Q86T65-4|DAAM2;ENSG00000146122|ENST00000274867|DAAM2	nc|ENSG00000146122|Q86T65-4|DAAM2	nc|ENSG00000146122|Q86T65-4|DAAM2	MULTI-MSMS	A375_MHC_IP_R1	1	564.1399536132812	2	563.739696	1125.46484	-0.28673	-0.00016164	-0.29041	-0.00016372	-0.57714	-0.00032536	563.7395137813336	72.49	0.91147	72.49	72.069	72.98	0					50	17	4	0	0	0	0.012843	1	26322	26322		92.653	60.348	1	9051800			36550	5605	26751	26968	35557	35557		297			-0.0928739801292977
NEIDDMQVF	9	Oxidation (M)	_NEIDDM(Oxidation (M))QVF_		NEIDDM(1)QVF		NEIDDM(86)QVF	0	0	1		nc|ENSG00000146122|Q86T65-4|DAAM2;ENSG00000146122|ENST00000274867|DAAM2	nc|ENSG00000146122|Q86T65-4|DAAM2	nc|ENSG00000146122|Q86T65-4|DAAM2	MULTI-MSMS	A375_MHC_IP_R2	2	564.1393432617188	2	563.739696	1125.46484	-0.78419	-0.00044208	-0.2841	-0.00016016	-1.0683	-0.00060223	563.7394657382341	71.823	0.85824	72.558	72.213	73.071	0.73421					42	16	3	0	0	0	0.017727	2	27225	27225;27302		86.332	60.064	1	9867100			36551	5605	26751	26968	35558;35559	35558		297			-0.0928739801292977
NEIDDMQVF	9	Unmodified	_NEIDDMQVF_					0	0	0		nc|ENSG00000146122|Q86T65-4|DAAM2;ENSG00000146122|ENST00000274867|DAAM2	nc|ENSG00000146122|Q86T65-4|DAAM2	nc|ENSG00000146122|Q86T65-4|DAAM2	MULTI-SECPEP	A375_MHC_IP_R1	1	556.141845703125	2	555.742239	1109.46993	-0.50405	-0.00028012	-0.40041	-0.00022252	-0.90446	-0.00050264	555.7421081757466	102.27	0.70688	102.27	102	102.71	0					31	13	3	0	0	0	0.011236	1	37560	37560		129.77	91.798	1	5946200			36552	5605	26751	26969	35560	35560					-0.08043094150298202
NEIDDMQVF	9	Unmodified	_NEIDDMQVF_					0	0	0		nc|ENSG00000146122|Q86T65-4|DAAM2;ENSG00000146122|ENST00000274867|DAAM2	nc|ENSG00000146122|Q86T65-4|DAAM2	nc|ENSG00000146122|Q86T65-4|DAAM2	MULTI-MSMS	A375_MHC_IP_R2	2	556.1423950195312	2	555.742239	1109.46993	-0.70651	-0.00039264	0.12393	6.8873E-05	-0.58258	-0.00032376	555.7423644253497	101.73	0.91294	102.49	102.06	102.97	0.76428					35	17	3	0	0	0	0.0028027	1	38502	38502		139.14	93.118	1	5298000			36553	5605	26751	26969	35561	35561					-0.08043094150298202
NEIDWLKRI	9	Unmodified	_NEIDWLKRI_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	A375_MHC_IP_R1	1	396.6240539550781	3	396.224146	1185.65061	-0.27387	-0.00010851	0.25243	0.00010002	-0.02144	-8.495E-06	396.2241975890556	84.601	0.56058	84.601	84.292	84.852	0					24	10	3	0	0	0	0.25114	1	30973	30973		34.222	17.656	1	3960800			36554	3905	26752	26970	35562	35562					0.06520792288711164
NEIDWLKRI	9	Unmodified	_NEIDWLKRI_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	A375_MHC_IP_R2	2	396.62396240234375	3	396.224146	1185.65061	-0.064233	-2.5451E-05	0.14528	5.7563E-05	0.081044	3.2112E-05	396.2240733739565	83.78	0.51225	84.519	84.254	84.766	0.73962					23	9	3	0	0	0	0.33243	1	31845	31845		28.234	8.6077	1	3060300			36555	3905	26752	26970	35563	35563					0.06520792288711164
NEIDWLKRI	9	Unmodified	_NEIDWLKRI_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	A375_MHC_IP_R2	2	594.2321166992188	2	593.83258	1185.65061	-0.50736	-0.00030129	0.036648	2.1763E-05	-0.47071	-0.00027952	593.8324057009346	83.766	0.25635	84.505	84.407	84.663	0.73962					6	4	2	0	0	0	0.74597	1	31862	31862		12.241	7.3436	1	1208000			36556	3905	26752	26970	35564	35564					0.06520792288711164
NEIDWLKRI	9	Unmodified	_NEIDWLKRI_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-MATCH	A375_MHC_IP_R1	1		2	593.83258	1185.65061	-0.5704	-0.00033872	1.111	0.00065974	0.54058	0.00032102	593.8334424883789	84.564	0.30606	84.564	84.391	84.697	0	0.029477	0.00047809	NaN	20.415	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1114200			36557	3905	26752	26970							0.06520792288711164
NEIEDRCSL	9	Unmodified	_NEIEDRCSL_					0	0	0			REV__ENSG00000164309|ENST00000446378|CMYA5	REV__ENSG00000164309|ENST00000446378|CMYA5	MSMS	A375_MHC_IP_R2	2	539.7182006835938	2	539.745313	1077.47607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.932	1	50.686	50.186	51.186	0.75406								0	0	0	0.1499	1	18770	18770		21.747	4.8044	1		+		36558	20481	26753	26971	35565	35565					-0.059565759187762524
NEIEDTFRQF	10	Unmodified	_NEIEDTFRQF_					0	0	0		ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	MULTI-MSMS	A375_MHC_IP_R1	1	650.203857421875	2	649.804217	1297.59388	-0.55053	-0.00035774	-0.12758	-8.29E-05	-0.67811	-0.00044064	649.8041369508427	84.723	1.9301	84.723	84.191	86.121	0					111	37	6	0	0	0	1.0833E-10	4	30948	30917;30948;31178;31397		218.93	171.34	1	239200000			36559	4142	26754	26972	35566;35567;35568;35569	35567					-0.04301300058477864
NEIEDTFRQF	10	Unmodified	_NEIEDTFRQF_					0	0	0		ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	MULTI-SECPEP	A375_MHC_IP_R1	1	433.9383239746094	3	433.53857	1297.59388	-0.36899	-0.00015997	-0.015984	-6.9297E-06	-0.38498	-0.0001669	433.5385653684129	84.781	0.71429	84.781	84.341	85.056	0					38	13	4	0	0	0	0.019736	1	31025	31025		110.18	92.316	1	4994300			36560	4142	26754	26972	35570	35570					-0.04301300058477864
NEIEDTFRQF	10	Unmodified	_NEIEDTFRQF_					0	0	0		ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	MULTI-MSMS	A375_MHC_IP_R2	2	650.2037353515625	2	649.804217	1297.59388	-0.6376	-0.00041432	-0.079905	-5.1923E-05	-0.7175	-0.00046624	649.8041857481297	84.204	1.9377	84.943	84.407	86.344	0.73962					128	37	6	0	0	0	7.0711E-16	5	31895	31895;32108;32155;32298;32432		232.63	181.22	1	279120000			36561	4142	26754	26972	35571;35572;35573;35574;35575	35571					-0.04301300058477864
NEIEDTFRQF	10	Unmodified	_NEIEDTFRQF_					0	0	0		ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	MULTI-SECPEP	A375_MHC_IP_R2	2	433.9386901855469	3	433.53857	1297.59388	-0.1723	-7.4697E-05	-0.25173	-0.00010913	-0.42402	-0.00018383	433.53842259811904	84.17	0.76614	84.91	84.559	85.325	0.73962					42	14	4	0	0	0	0.051307	1	31952	31952		94.801	81.282	1	12237000			36562	4142	26754	26972	35576	35576					-0.04301300058477864
NEIEHIPVW	9	Unmodified	_NEIEHIPVW_					0	0	0		nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL	nc|ENSG00000119397|Q7Z7A1-5|CNTRL	nc|ENSG00000119397|Q7Z7A1-5|CNTRL	MULTI-SECPEP	A375_MHC_IP_R2	2	568.4051513671875	2	568.790381	1135.56621	-0.39782	-0.00022628	1.1391	0.00064791	0.74128	0.00042163	569.2919825617826	96.361	0.4564	97.111	96.957	97.413	0.75045					10	8	2	0	0	0	0.60917	1	36649	36649		19.257	0	1	419540			36563	3588	26755	26973	35577	35577					0.003848414719413995
NEIEHKEPL	9	Unmodified	_NEIEHKEPL_					0	0	0			REV__ENSG00000203485|ENST00000392634|INF2	REV__ENSG00000203485|ENST00000392634|INF2	MULTI-SECPEP	A375_MHC_IP_R2	2	554.2073364257812	2	554.785296	1107.55604	-0.69723	-0.00038682	-0.52177	-0.00028947	-1.219	-0.00067628	555.286136007096	84.194	0.91949	84.933	84.356	85.276	0.73962					50	17	4	0	0	0	0.31606	1	32014	32014		32.786	5.1569	1	5112100	+		36564	22462	26756	26974	35578	35578					0.006562337467130419
NEIELKKIA	9	Unmodified	_NEIELKKIA_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1;ENST00000522311.1_1_8:103848756-103855898:-|nuORF	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-SECPEP	A375_MHC_IP_R1	1	529.6925659179688	2	529.316232	1056.61791	-0.39404	-0.00020857	-0.26323	-0.00013933	-0.65727	-0.0003479	529.3160963591183	35.41	0.40639	35.41	35.167	35.573	0					11	7	2	0	0	0	0.41731	1	11792	11792		42.312	5.2378	1	2181100			36565	6126	26757	26975	35579	35579					0.09186585165866745
NEIELKKIA	9	Unmodified	_NEIELKKIA_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1;ENST00000522311.1_1_8:103848756-103855898:-|nuORF	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-SECPEP	A375_MHC_IP_R2	2	529.692626953125	2	529.316232	1056.61791	-0.76846	-0.00040676	-0.26948	-0.00014264	-1.0379	-0.0005494	529.3160602856033	34.539	0.30604	35.293	35.109	35.415	0.75335					9	5	2	0	0	0	0.41731	1	12471	12471		42.312	11.044	1	1451000			36566	6126	26757	26975	35580	35580					0.09186585165866745
NEIEQEHDR	9	Unmodified	_NEIEQEHDR_					0	0	0			REV__CEP112|p.R692Q|1|0.25|ENSG00000154240|chr17:65902240-65902240|C/T|missense_variant	REV__CEP112|p.R692Q|1|0.25|ENSG00000154240|chr17:65902240-65902240|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	585.6630249023438	2	585.262716	1168.51088	-0.49021	-0.0002869	0.68781	0.00040255	0.1976	0.00011565	585.2632436288934	76.269	0.55923	77.01	76.742	77.301	0.74052					25	10	3	0	0	0	0.31606	1	28961	28961		47.749	3.9763	1	4421400	+		36567	15636	26758	26976	35581	35581					-0.06663616786477178
NEIFCNGY	8	Unmodified	_NEIFCNGY_					0	0	0			REV__ENST00000432176.6_1_7:22984676-22984820:-|nuORF	REV__ENST00000432176.6_1_7:22984676-22984820:-|nuORF	MSMS	A375_MHC_IP_R1	1	480.1817321777344	2	480.20001	958.385467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.932	1	80.932	80.432	81.432	0								0	0	0	0.16876	1	29570	29570		12.532	0	1		+		36568	24711	26759	26977	35582	35582					-0.09539000176403079
NEIFSTHLW	9	Unmodified	_NEIFSTHLW_					0	0	0			REV__nc|ENSG00000274391|P56180-4|TPTE	REV__nc|ENSG00000274391|P56180-4|TPTE	MULTI-SECPEP	A375_MHC_IP_R2	2	573.6607666015625	2	573.782556	1145.55056	-0.22108	-0.00012685	-1.0933	-0.00062732	-1.3144	-0.00075417	573.7814809084334	75.82	0.4066	76.561	76.385	76.792	0.74052					12	7	2	0	0	0	0.60917	1	28854	28854		19.257	0	1	1167400	+		36569	22957	26760	26978	35583	35583					-0.016394450450889053
NEIGQFQSF	9	Unmodified	_NEIGQFQSF_					0	0	0		ENSG00000168917|ENST00000446465|SLC35G2	ENSG00000168917|ENST00000446465|SLC35G2	ENSG00000168917|ENST00000446465|SLC35G2	MULTI-MSMS	A375_MHC_IP_R1	1	535.6507568359375	2	535.251089	1068.48762	-0.86946	-0.00046538	0.71392	0.00038212	-0.15554	-8.3255E-05	535.2511026678714	86.634	1.3697	86.634	86.224	87.593	0					81	26	5	0	0	0	0.0099638	2	31725	31725;31945		121.35	38.817	1	36295000			36570	7359	26761	26979	35584;35585	35584					-0.043880108331450174
NEIGQFQSF	9	Unmodified	_NEIGQFQSF_					0	0	0		ENSG00000168917|ENST00000446465|SLC35G2	ENSG00000168917|ENST00000446465|SLC35G2	ENSG00000168917|ENST00000446465|SLC35G2	MULTI-SECPEP	A375_MHC_IP_R2	2	535.6505737304688	2	535.251089	1068.48762	-0.66068	-0.00035363	0.31328	0.00016768	-0.34741	-0.00018595	535.2509905829936	85.972	1.4271	86.705	86.082	87.509	0.733					78	27	5	0	0	0	0.011031	1	32640	32640		107.1	24.57	1	30905000			36571	7359	26761	26979	35586	35586					-0.043880108331450174
NEIHALLY	8	Unmodified	_NEIHALLY_					0	0	0			REV__tr|U7SHB2|U7SHB2_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02247PE=4SV=1	REV__tr|U7SHB2|U7SHB2_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02247PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	487.7376403808594	2	486.761092	971.507631	0.10597	5.158E-05	-0.10127	-4.9293E-05	0.0046982	2.2869E-06	486.76103022209895	69.181	1.7731	69.181	68.412	70.185	0					101	34	4	0	0	0	0.6817	1	25207	25207		40.449	0.49126	1	21545000	+		36572	28205	26762	26980	35587	35587					0.020737848974818007
NEIHALLY	8	Unmodified	_NEIHALLY_					0	0	0			REV__tr|U7SHB2|U7SHB2_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02247PE=4SV=1	REV__tr|U7SHB2|U7SHB2_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02247PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	487.1764831542969	2	486.761092	971.507631	-0.2828	-0.00013765	-0.10058	-4.8958E-05	-0.38338	-0.00018661	486.76099585669635	50.366	0.61214	50.366	50.101	50.713	0					18	11	2	0	0	0	0.95423	1	17975	17975		7.9102	0.62092	1	3754100	+		36573	28205	26762	26980	35588	35588					0.020737848974818007
NEIKENWK	8	Unmodified	_NEIKENWK_					0	0	0			REV__tr|U7T2B0|U7T2B0_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00617PE=4SV=1	REV__tr|U7T2B0|U7T2B0_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00617PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	531.174560546875	2	530.774731	1059.53491	-0.5911	-0.00031374	0.62993	0.00033435	0.038828	2.0609E-05	530.7751583430235	73.883	0.60733	73.883	73.589	74.197	0					17	11	2	0	0	0	0.72637	1	26913	26913		48.346	0	1	1899500	+		36574	28732	26763	26981	35589	35589					0.007522684378500344
NEIKLQII	8	Unmodified	_NEIKLQII_					0	0	0			REV__ENST00000501695.3_1_5:147758402-147763328:-|nuORF	REV__ENST00000501695.3_1_5:147758402-147763328:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	486.1529541015625	2	485.800217	969.585882	-0.51796	-0.00025162	0.022187	1.0778E-05	-0.49577	-0.00024084	485.8001761848842	69.622	0.86237	70.356	69.981	70.844	0.73421					32	16	3	0	0	0	0.10446	1	26379	26379		100.37	0	1	6667600	+		36575	25493	26764	26982	35590	35590					0.09987217482728283
NEIKPPIIHY	10	Unmodified	_NEIKPPIIHY_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;nc|ENSG00000198586|Q9UKI8-3|TLK1;nc|ENSG00000198586|Q9UKI8-4|TLK1;nc|ENSG00000198586|Q9UKI8-5|TLK1;ENSG00000198586|ENST00000431350|TLK1;nc|ENSG00000198586|Q9UKI8-2|TLK1;ENST00000530992.1_1_17:32364642-32365872:-|nuORF	nc|ENSG00000146872|Q86UE8-3|TLK2;ENST00000530992.1_1_17:32364642-32365872:-|nuORF	nc|ENSG00000146872|Q86UE8-3|TLK2	MULTI-MSMS	A375_MHC_IP_R1	1	408.9640808105469	3	408.564279	1222.67101	0.088313	3.6081E-05	0.17422	7.1182E-05	0.26254	0.00010726	408.5641762203541	54.062	0.60623	54.062	53.758	54.364	0					22	11	3	0	0	0	0.60385	1	19329	19329		20.581	15.865	1	1819300			36576	5645;13160	26765	26983	35591	35591					0.06857962948538443
NEIKPPIIHY	10	Unmodified	_NEIKPPIIHY_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;nc|ENSG00000198586|Q9UKI8-3|TLK1;nc|ENSG00000198586|Q9UKI8-4|TLK1;nc|ENSG00000198586|Q9UKI8-5|TLK1;ENSG00000198586|ENST00000431350|TLK1;nc|ENSG00000198586|Q9UKI8-2|TLK1;ENST00000530992.1_1_17:32364642-32365872:-|nuORF	nc|ENSG00000146872|Q86UE8-3|TLK2;ENST00000530992.1_1_17:32364642-32365872:-|nuORF	nc|ENSG00000146872|Q86UE8-3|TLK2	MULTI-MATCH	A375_MHC_IP_R2	2		3	408.564279	1222.67101	-0.57361	-0.00023436	0.56197	0.0002296	-0.011637	-4.7547E-06	408.56442558050304	53.347	0.45902	54.099	53.79	54.249	0.75105	0.018168	0.00029709	NaN	20.581	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1697500			36577	5645;13160	26765	26983							0.06857962948538443
NEIKRFGV	8	Unmodified	_NEIKRFGV_					0	0	0		tr|U7T3Y0|U7T3Y0_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00655PE=3SV=1	tr|U7T3Y0|U7T3Y0_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00655PE=3SV=1	tr|U7T3Y0|U7T3Y0_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00655PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	481.1604309082031	2	481.774534	961.534515	-0.55797	-0.00026882	0.92938	0.00044775	0.37141	0.00017894	481.774945800401	80.141	0.2012	80.885	80.759	80.961	0.74474					5	3	2	0	0	0	0.86765	1	30385	30385		24.674	1.5255	1	381700			36578	29989	26766	26984	35592	35592					0.05220893508669633
NEIKYYKNNTD	11	Unmodified	_NEIKYYKNNTD_					0	0	0		ENST00000529712.5_1_11:47690447-47736202:-|nuORF;ENSG00000165923|ENST00000525123|AGBL2	ENST00000529712.5_1_11:47690447-47736202:-|nuORF	ENST00000529712.5_1_11:47690447-47736202:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	701.734619140625	2	701.335881	1400.65721	-0.58984	-0.00041368	0.95941	0.00067287	0.36957	0.00025919	701.3357600227763	73.209	0.60904	73.209	72.93	73.539	0					24	11	3	0	0	0	0.52344	1	26619	26619		23.79	0	1	3479700			36579	7005	26767	26985	35593	35593					-0.027093593412473638
NEILDLQRLQ	10	Unmodified	_NEILDLQRLQ_					0	0	0		nc|ENSG00000029153|Q8WYA1-9|BMAL2;nc|ENSG00000029153|Q8WYA1-6|BMAL2;nc|ENSG00000029153|Q8WYA1-8|BMAL2;nc|ENSG00000029153|Q8WYA1-7|BMAL2;nc|ENSG00000029153|Q8WYA1-4|BMAL2;nc|ENSG00000029153|Q8WYA1-3|BMAL2;nc|ENSG00000029153|Q8WYA1-5|BMAL2;nc|ENSG00000029153|Q8WYA1-2|BMAL2;ENSG00000029153|ENST00000266503|BMAL2	nc|ENSG00000029153|Q8WYA1-9|BMAL2	nc|ENSG00000029153|Q8WYA1-9|BMAL2	MSMS	A375_MHC_IP_R2	2	621.2371215820312	2	621.346052	1240.67755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.799	1	66.537	66.037	67.037	0.73811								0	0	0	0.1524	1	24948	24948		13.042	1.4022	1				36580	1103	26768	26986	35594	35594					0.06683856109225417
NEILGSLRW	9	Unmodified	_NEILGSLRW_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	A375_MHC_IP_R1	1	544.6984252929688	2	544.298373	1086.58219	-0.47375	-0.00025786	-0.18935	-0.00010306	-0.66309	-0.00036092	544.298166565662	97.32	0.96213	97.32	96.781	97.743	0					45	17	4	0	0	0	0.011143	1	35719	35719		125.04	10.389	1	11016000			36581	3055	26769	26987	35595	35595					0.042365477088424086
NEILGSLRW	9	Unmodified	_NEILGSLRW_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	A375_MHC_IP_R2	2	544.6974487304688	2	544.298373	1086.58219	-0.86649	-0.00047163	0.070935	3.861E-05	-0.79555	-0.00043302	544.2983351583432	96.407	1.0118	97.16	96.655	97.667	0.75289					40	18	3	0	0	0	0.0012561	1	36616	36616		151.48	24.914	1	10597000			36582	3055	26769	26987	35596	35596					0.042365477088424086
NEILKKSFY	9	Unmodified	_NEILKKSFY_					0	0	0			REV__tr|U7SSK8|U7SSK8_FUSNUNADH:flavinoxidoreductase/NADHoxidaseN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01301PE=4SV=1	REV__tr|U7SSK8|U7SSK8_FUSNUNADH:flavinoxidoreductase/NADHoxidaseN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01301PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	570.580078125	2	571.316232	1140.61791	-0.18847	-0.00010768	-1.5035	-0.00085896	-1.6919	-0.00096664	571.3155092315648	90.331	0.35569	91.063	90.801	91.157	0.7318					9	6	2	0	0	0	0.75466	1	34330	34330		1.8442	0	1	614950	+		36583	28435	26770	26988	35597	35597					0.053225851658453394
NEILLSPGD	9	Unmodified	_NEILLSPGD_					0	0	0			REV__ENSG00000185010|ENST00000360256|F8	REV__ENSG00000185010|ENST00000360256|F8	MSMS	A375_MHC_IP_R2	2	479.17327880859375	2	479.248015	956.481476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.48	1	108.23	107.73	108.73	0.75436								0	0	0	0.14169	1	40603	40603		29.082	0	1		+		36584	21858	26771	26989	35598	35598					0.001494709353437429
NEIMVAPDKDY	11	Oxidation (M)	_NEIM(Oxidation (M))VAPDKDY_		NEIM(1)VAPDKDY		NEIM(84)VAPDKDY	0	0	1		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	A375_MHC_IP_R1	1	656.1995239257812	2	655.800285	1309.58602	-0.80873	-0.00053036	-0.089505	-5.8698E-05	-0.89823	-0.00058906	655.8002328875307	41.558	0.45957	41.558	41.266	41.725	0					19	8	3	0	0	0	0.026094	1	14391	14391		84.06	65.687	1	2772500			36585	4016	26772	26990	35599	35599		206			-0.05639195370258676
NEIMVAPDKDY	11	Oxidation (M)	_NEIM(Oxidation (M))VAPDKDY_		NEIM(1)VAPDKDY		NEIM(65)VAPDKDY	0	0	1		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	A375_MHC_IP_R2	2	656.1995849609375	2	655.800285	1309.58602	-1.09	-0.00071482	0.23469	0.00015391	-0.85531	-0.00056091	655.8004648612487	40.892	0.45708	41.667	41.438	41.895	0.77451					12	8	2	0	0	0	0.13072	1	15192	15192		64.688	46.315	1	2713400			36586	4016	26772	26990	35600	35600		206			-0.05639195370258676
NEIMVAPDKDY	11	Unmodified	_NEIMVAPDKDY_					0	0	0		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	A375_MHC_IP_R2	2	648.2015991210938	2	647.802828	1293.5911	-0.90833	-0.00058842	-0.10555	-6.8373E-05	-1.0139	-0.00065679	647.802271602235	51.626	0.55986	52.378	52.169	52.729	0.75225					14	10	2	0	0	0	0.64117	1	19474	19474		29.281	13.434	1	2527100			36587	4016	26772	26991	35601	35601					-0.04394891507627108
NEINEEYFN	9	Unmodified	_NEINEEYFN_					0	0	0			REV__tr|U7SF19|U7SF19_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02364PE=4SV=1	REV__tr|U7SF19|U7SF19_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02364PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	585.6630249023438	2	586.248743	1170.48293	-0.53156	-0.00031163	-0.13059	-7.6558E-05	-0.66215	-0.00038819	586.2486876804705	76.434	1.0625	77.175	76.843	77.905	0.74052					53	20	4	0	0	0	0.58047	1	28961	28961		15.847	0	1	10339000	+		36588	28165	26773	26992	35602	35602					-0.09548939766546027
NEINEEYFNK	10	Unmodified	_NEINEEYFNK_					0	0	0			REV__tr|U7SF19|U7SF19_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02364PE=4SV=1	REV__tr|U7SF19|U7SF19_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02364PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	650.6954956054688	2	650.296224	1298.5779	-0.64808	-0.00042145	0.374	0.00024321	-0.27408	-0.00017824	650.7984662354091	89.526	0.45497	90.257	89.936	90.391	0.7318					15	8	3	0	0	0	0.60608	1	34096	34096		20.415	0	1	1561400	+		36589	28165	26774	26993	35603	35603					-0.05945006295382882
NEINIMNQL	9	Unmodified	_NEINIMNQL_					0	0	0		ENST00000564731.5_1_16:46761123-46772038:-|nuORF;nc|ENSG00000140795|Q32MK0-4|MYLK3;ENSG00000140795|ENST00000394809|MYLK3	ENST00000564731.5_1_16:46761123-46772038:-|nuORF	ENST00000564731.5_1_16:46761123-46772038:-|nuORF	MSMS	A375_MHC_IP_R2	2	544.6973266601562	2	544.773874	1087.53319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.747	1	97.503	97.003	98.003	0.75586								0	0	0	0.15486	1	36727	36727		13.042	2.9685	1				36590	5184	26775	26994	35604	35604					-0.00707108642404819
NEIQEALSRSY	11	Unmodified	_NEIQEALSRSY_					0	0	0		nc|ENSG00000086065|Q9NZZ3-2|CHMP5;ENSG00000086065|ENST00000223500|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	MULTI-MSMS	A375_MHC_IP_R1	1	655.72265625	2	655.322773	1308.63099	-0.56565	-0.00037068	-0.70801	-0.00046397	-1.2737	-0.00083466	655.3223979446509	65.618	0.76569	65.618	65.206	65.972	0					28	14	3	0	0	0	0.0042241	1	23758	23758		96.24	62.018	1	4289100			36591	1829	26776	26995	35605	35605					-0.010976285127071606
NEIQEALSRSY	11	Unmodified	_NEIQEALSRSY_					0	0	0		nc|ENSG00000086065|Q9NZZ3-2|CHMP5;ENSG00000086065|ENST00000223500|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	MULTI-SECPEP	A375_MHC_IP_R2	2	655.7218627929688	2	655.322773	1308.63099	-0.90482	-0.00059295	-0.32124	-0.00021052	-1.2261	-0.00080346	655.3227384882288	65.028	0.5071	65.766	65.511	66.018	0.73812					20	9	3	0	0	0	0.17719	1	24657	24657		68.484	43.602	1	3684500			36592	1829	26776	26995	35606	35606					-0.010976285127071606
NEIQNENASL	10	Unmodified	_NEIQNENASL_					0	0	0		HHLA2|p.G102E|2|0.35|ENSG00000114455|chr3:108353667-108353667|G/A|missense_variant	HHLA2|p.G102E|2|0.35|ENSG00000114455|chr3:108353667-108353667|G/A|missense_variant	HHLA2|p.G102E|2|0.35|ENSG00000114455|chr3:108353667-108353667|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	566.6163330078125	2	566.267467	1130.52038	-0.46835	-0.00026521	-2.2895	-0.0012965	-2.7578	-0.0015617	566.768220955184	65.049	0.8121	65.787	65.41	66.222	0.73811					33	15	3	0	0	0	0.91556	1	24582	24582		10.074	0.6908	1	1798400			36593	14124	26777	26996	35607	35607					-0.03965848500956781
NEIQSPWL	8	Unmodified	_NEIQSPWL_					0	0	0			REV__ENST00000254322.2_1_19:14626154-14626388:-|nuORF	REV__ENST00000254322.2_1_19:14626154-14626388:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	494.1506042480469	2	493.750724	985.486896	-0.48099	-0.00023749	0.37496	0.00018514	-0.10603	-5.235E-05	493.75078811278166	80.82	0.96459	80.82	80.541	81.506	0					26	18	2	0	0	0	0.64713	1	29500	29500		43.858	0	1	6474400	+		36594	23138	26778	26997	35608	35608					-0.006428054821981277
NEISEETTIQ	10	Unmodified	_NEISEETTIQ_					0	0	0		ENSG00000164118|ENST00000503780|CEP44	ENSG00000164118|ENST00000503780|CEP44	ENSG00000164118|ENST00000503780|CEP44	MULTI-MSMS	A375_MHC_IP_R1	1	582.67529296875	2	582.274958	1162.53536	-0.4021	-0.00023413	1.0111	0.00058874	0.60901	0.00035461	582.2755522842642	32.967	0.40507	32.967	32.734	33.14	0					11	7	2	0	0	0	0.17879	1	10697	10697		51.415	11.466	1	2359900			36595	6784	26779	26998	35609	35609					-0.03940401423596995
NEISEETTIQ	10	Unmodified	_NEISEETTIQ_					0	0	0		ENSG00000164118|ENST00000503780|CEP44	ENSG00000164118|ENST00000503780|CEP44	ENSG00000164118|ENST00000503780|CEP44	MULTI-MATCH	A375_MHC_IP_R2	2		2	582.274958	1162.53536	-0.39256	-0.00022858	0.95335	0.00055511	0.56079	0.00032654	582.2755436578663	32.216	0.40715	32.952	32.806	33.213	0.73692	-0.0073741	-4.0938E-05	NaN	51.415	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2149000			36596	6784	26779	26998							-0.03940401423596995
NEISKAWI	8	Unmodified	_NEISKAWI_					0	0	0			REV__Tigger1_dup5491|chr7:22483914-22485489:+|2.0575126454345183|0.2644366730707643|2.96|467.0|7|1|sense	REV__Tigger1_dup5491|chr7:22483914-22485489:+|2.0575126454345183|0.2644366730707643|2.96|467.0|7|1|sense	MULTI-MSMS	A375_MHC_IP_R1	1	481.69012451171875	2	480.761092	959.507631	-0.5294	-0.00025451	0.32179	0.0001547	-0.20761	-9.9811E-05	480.76115979181577	80.799	0.76193	80.799	80.541	81.303	0					39	14	4	0	0	0	0.68328	1	29584	29584		39.957	39.957	1	10871000	+		36597	28110	26780	26999	35610	35610					0.026257848974637454
NEISKAWI	8	Unmodified	_NEISKAWI_					0	0	0			REV__Tigger1_dup5491|chr7:22483914-22485489:+|2.0575126454345183|0.2644366730707643|2.96|467.0|7|1|sense	REV__Tigger1_dup5491|chr7:22483914-22485489:+|2.0575126454345183|0.2644366730707643|2.96|467.0|7|1|sense	MULTI-SECPEP	A375_MHC_IP_R1	1	481.16064453125	2	480.761092	959.507631	-0.5294	-0.00025451	0.32179	0.0001547	-0.20761	-9.9811E-05	480.76115979181577	80.799	0.76193	80.799	80.541	81.303	0					39	14	4	0	0	0	0.51146	1	29587	29587		61.357	9.0891	1	10871000	+		36598	28110	26780	26999	35611	35611					0.026257848974637454
NEISKAWI	8	Unmodified	_NEISKAWI_					0	0	0			REV__Tigger1_dup5491|chr7:22483914-22485489:+|2.0575126454345183|0.2644366730707643|2.96|467.0|7|1|sense	REV__Tigger1_dup5491|chr7:22483914-22485489:+|2.0575126454345183|0.2644366730707643|2.96|467.0|7|1|sense	MULTI-MSMS	A375_MHC_IP_R2	2	481.6902160644531	2	480.761092	959.507631	-0.53584	-0.00025761	-0.39374	-0.00018929	-0.92958	-0.00044691	480.7608382771507	80.044	0.81299	80.788	80.401	81.214	0.74473					37	15	3	0	0	0	0.77562	1	30284	30284		10.824	10.824	1	10300000	+		36599	28110	26780	26999	35612	35612					0.026257848974637454
NEISKAWI	8	Unmodified	_NEISKAWI_					0	0	0			REV__Tigger1_dup5491|chr7:22483914-22485489:+|2.0575126454345183|0.2644366730707643|2.96|467.0|7|1|sense	REV__Tigger1_dup5491|chr7:22483914-22485489:+|2.0575126454345183|0.2644366730707643|2.96|467.0|7|1|sense	MULTI-SECPEP	A375_MHC_IP_R2	2	481.1604309082031	2	480.761092	959.507631	-0.53584	-0.00025761	-0.39374	-0.00018929	-0.92958	-0.00044691	480.7608382771507	80.044	0.81299	80.788	80.401	81.214	0.74473					37	15	3	0	0	0	0.36486	1	30385	30385		52.268	0	1	10300000	+		36600	28110	26780	26999	35613	35613					0.026257848974637454
NEISKLGI	8	Unmodified	_NEISKLGI_					0	0	0		ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENSG00000131981|ENST00000254301|LGALS3	ENSG00000131981|ENST00000254301|LGALS3	MULTI-MSMS	A375_MHC_IP_R2	2	437.65533447265625	2	437.255643	872.496732	-0.45966	-0.00020099	0.038676	1.6911E-05	-0.42098	-0.00018408	437.25567909323433	54.809	0.45926	55.56	55.37	55.83	0.75075					10	8	2	0	0	0	0.25593	1	20717	20717		62.573	8.7399	1	2005200			36601	4364	26781	27000	35614	35614					0.05538382523195651
NEISLQFQ	8	Unmodified	_NEISLQFQ_					0	0	0			REV__nc|ENSG00000134215|Q9UKW4-2|VAV3	REV__nc|ENSG00000134215|Q9UKW4-2|VAV3	MSMS	A375_MHC_IP_R1	1	489.6651611328125	2	489.748182	977.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.733	1	63.733	63.233	64.233	0								0	0	0	0.16876	1	23047	23047		10.074	0	1		+		36602	18757	26782	27001	35615	35615					-0.007831093448089632
NEISTNVVV	9	Unmodified	_NEISTNVVV_					0	0	0			REV__DNAH17|p.D1295N|1|0.21|ENSG00000187775|chr17:78515004-78515004|C/T|missense_variant	REV__DNAH17|p.D1295N|1|0.21|ENSG00000187775|chr17:78515004-78515004|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	487.1609802246094	2	487.761289	973.508025	-0.23866	-0.00011641	0.14934	7.2843E-05	-0.089317	-4.3565E-05	487.7614518927267	50.242	0.71608	50.242	49.845	50.561	0					19	13	2	0	0	0	0.39388	1	17855	17855		25.399	3.6527	1	2187300	+		36603	16005	26783	27002	35616	35616					0.020211598266882902
NEITCYENF	9	Unmodified	_NEITCYENF_					0	0	0		ENSG00000126262|ENST00000599180|FFAR2	ENSG00000126262|ENST00000599180|FFAR2	ENSG00000126262|ENST00000599180|FFAR2	MSMS	A375_MHC_IP_R1	1	566.671875	2	566.734414	1131.45428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.27	1	102.27	101.77	102.77	0								0	0	0	0.15273	1	37582	37582		17.113	1.2657	1				36604	4037	26784	27003	35617	35617					-0.10619380667367295
NEITSNSRY	9	Unmodified	_NEITSNSRY_					0	0	0		ENST00000576348.1_1_16:14014055-14020614:+|nuORF;nc|ENSG00000175595|Q92889-2|ERCC4;ENSG00000175595|ENST00000311895|ERCC4	ENST00000576348.1_1_16:14014055-14020614:+|nuORF	ENST00000576348.1_1_16:14014055-14020614:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	542.69775390625	2	542.256902	1082.49925	-1.163	-0.00063064	-0.52344	-0.00028384	-1.6864	-0.00091448	542.2568307527097	23.126	0.56003	23.756	23.368	23.928	0.63014					17	10	3	0	0	0	0.095851	2	7385	7385;7425		51.415	17.97	1	4578200			36605	7971	26785	27004	35618;35619	35618					-0.03869813809819789
NEIVGPLYY	9	Unmodified	_NEIVGPLYY_					0	0	0		ENSG00000107021|ENST00000372648|TBC1D13;nc|ENSG00000107021|Q9NVG8-3|TBC1D13	ENSG00000107021|ENST00000372648|TBC1D13	ENSG00000107021|ENST00000372648|TBC1D13	MULTI-SECPEP	A375_MHC_IP_R2	2	534.6738891601562	2	534.274032	1066.53351	-0.76878	-0.00041074	0.49327	0.00026354	-0.27551	-0.0001472	534.2741549290395	102.81	0.55915	103.58	103.28	103.84	0.76428					18	10	2	0	0	0	0.23894	1	38961	38961		47.594	24.858	1	2324100			36606	2721	26786	27005	35620	35620					0.0029063434908493946
NEIVTMQPKSF	11	Unmodified	_NEIVTMQPKSF_					0	0	0			REV__ENST00000310389.5_1_5:175799850-175800087:+|nuORF	REV__ENST00000310389.5_1_5:175799850-175800087:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	431.6064758300781	3	431.888434	1292.64347	-0.27393	-0.00011831	2.4483	0.0010574	2.1744	0.0009391	431.88986681624743	32.484	0.30624	33.221	33.01	33.317	0.73692					7	5	2	0	0	0	0.99424	1	11476	11476		0.32927	0	1	2059900	+		36607	23499	26787	27006	35621	35621					0.008856916259674108
NEIVWSGAI	9	Unmodified	_NEIVWSGAI_					0	0	0			REV__OR1A2|p.G152E|1|0.13|ENSG00000172150|chr17:3197973-3197973|G/A|missense_variant	REV__OR1A2|p.G152E|1|0.13|ENSG00000172150|chr17:3197973-3197973|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	495.18719482421875	2	494.758549	987.502546	-0.5042	-0.00024946	0.24454	0.00012099	-0.25966	-0.00012847	494.75856557746994	80.822	0.86187	80.822	80.492	81.353	0					40	16	4	0	0	0	0.05755	1	29513	29513		71.134	10.744	1	18021000	+		36608	27654	26788	27007	35622	35622					0.00829481034861601
NEIVWSGAI	9	Unmodified	_NEIVWSGAI_					0	0	0			REV__OR1A2|p.G152E|1|0.13|ENSG00000172150|chr17:3197973-3197973|G/A|missense_variant	REV__OR1A2|p.G152E|1|0.13|ENSG00000172150|chr17:3197973-3197973|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	495.1866760253906	2	494.758549	987.502546	-0.45092	-0.00022309	-0.56499	-0.00027953	-1.0159	-0.00050263	494.75819143563245	80.035	0.70956	80.78	80.453	81.163	0.74473					31	13	3	0	0	0	0.034481	1	30366	30366		71.134	6.8973	1	16911000	+		36609	27654	26788	27007	35623	35623					0.00829481034861601
NEIYDNGF	8	Unmodified	_NEIYDNGF_					0	0	0			REV__nc|ENSG00000171174|Q9H477-2|RBKS	REV__nc|ENSG00000171174|Q9H477-2|RBKS	MSMS	A375_MHC_IP_R1	1	486.15283203125	2	486.208889	970.403226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.452	1	70.452	69.952	70.952	0								0	0	0	0.16876	1	25581	25581		18.135	0	1		+		36610	21048	26789	27008	35624	35624					-0.08315961649896053
NEIYDNGF	8	Unmodified	_NEIYDNGF_					0	0	0			REV__nc|ENSG00000171174|Q9H477-2|RBKS	REV__nc|ENSG00000171174|Q9H477-2|RBKS	MSMS	A375_MHC_IP_R2	2	486.1529541015625	2	486.208889	970.403226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.61	1	70.344	69.844	70.844	0.73421								0	0	0	0.16876	1	26379	26379		18.135	0	1		+		36611	21048	26789	27008	35625	35625					-0.08315961649896053
NEIYQRTVSW	10	Unmodified	_NEIYQRTVSW_					0	0	0			REV__tr|U7T5R6|U7T5R6_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00147PE=3SV=1	REV__tr|U7T5R6|U7T5R6_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00147PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	647.9351806640625	2	648.322576	1294.6306	-0.27165	-0.00017611	0.23169	0.00015021	-0.03996	-2.5907E-05	648.3228723174341	81.679	0.35368	81.679	81.506	81.86	0					11	6	2	0	0	0	0.91773	1	29888	29888		15.248	0	1	1044600	+		36612	28834	26790	27009	35626	35626					-0.004930034419203366
NEIYSWFTRTF	11	Unmodified	_NEIYSWFTRTF_					0	0	0		ENSG00000128573|ENST00000350908|FOXP2;nc|ENSG00000128573|O15409-9|FOXP2;nc|ENSG00000128573|O15409-4|FOXP2;ENST00000441290.6_1_7:114296499-114304492:+|nuORF;nc|ENSG00000128573|O15409-2|FOXP2	ENSG00000128573|ENST00000350908|FOXP2	ENSG00000128573|ENST00000350908|FOXP2	MSMS	A375_MHC_IP_R2	2	488.4691162109375	3	488.569981	1462.68811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.246	1	68.981	68.481	69.481	0.73511								0	0	0	0.1628	1	25862	25862		4.1166	1.4854	1				36613	4146	26791	27010	35627	35627					-0.024721612363464374
NEKAEQKRKQY	11	Unmodified	_NEKAEQKRKQY_					0	0	0			REV__SETD5|p.R1072Q|1|0.38|ENSG00000168137|chr3:9473255-9473255|G/A|missense_variant	REV__SETD5|p.R1072Q|1|0.38|ENSG00000168137|chr3:9473255-9473255|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	711.1835327148438	2	711.378414	1420.74228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.47	1	107.23	106.73	107.73	0.75977								0	0	0	0.16265	1	40243	40243		4.897	0.70751	1		+		36614	27949	26792	27011	35628	35628					0.04873430915222343
NEKFSSFSKN	10	Unmodified	_NEKFSSFSKN_					0	0	0			REV__CNR1|p.L86F|1|0.32|ENSG00000118432|chr6:88145019-88145019|G/A|missense_variant	REV__CNR1|p.L86F|1|0.32|ENSG00000118432|chr6:88145019-88145019|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	593.6690063476562	2	594.288202	1186.56185	-0.65545	-0.00038953	0.3534	0.00021002	-0.30205	-0.0001795	594.2882678556899	23.762	0.50821	23.762	23.483	23.991	0					14	9	3	0	0	0	0.92772	1	6666	6666		2.2828	0	1	6538200	+		36615	15812	26793	27012	35629	35629					-0.023966677416183302
NEKIAVLY	8	Unmodified	_NEKIAVLY_					0	0	0		ADAM28|p.G65E|2|0.15|ENSG00000042980|chr8:24309937-24309937|G/A|missense_variant	ADAM28|p.G65E|2|0.15|ENSG00000042980|chr8:24309937-24309937|G/A|missense_variant	ADAM28|p.G65E|2|0.15|ENSG00000042980|chr8:24309937-24309937|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	949.8604125976562	1	949.535309	948.528032	-0.084003	-7.9764E-05	0.26548	0.00025208	0.18148	0.00017232	949.5355308670387	92	0.40274	92.739	92.534	92.937	0.73901					12	7	2	0	0	0	0.51146	1	35049	35049		52.268	0	1	2571400			36616	47	26794	27013	35630	35630					0.05170955557287016
NEKIKKIYRY	10	Unmodified	_NEKIKKIYRY_					0	0	0			REV__tr|U7T5W5|U7T5W5_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00155PE=4SV=1	REV__tr|U7T5W5|U7T5W5_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00155PE=4SV=1	MSMS	A375_MHC_IP_R1	1	677.9293823242188	2	677.895712	1353.77687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.72	1	65.72	65.22	66.22	0								0	0	0	0.15435	1	23801	23801		6.7232	1.8262	1		+		36617	28842	26795	27014	35631	35631					0.11413298793991089
NEKIKRLAI	9	Unmodified	_NEKIKRLAI_					0	0	0			REV__ENSG00000198707|ENST00000552810|CEP290	REV__ENSG00000198707|ENST00000552810|CEP290	MULTI-SECPEP	A375_MHC_IP_R1	1	543.2449340820312	2	542.84549	1083.67643	-0.5948	-0.00032289	-0.1983	-0.00010765	-0.7931	-0.00043053	542.8453057069788	46.288	0.30052	46.288	46.144	46.444	0					10	5	2	0	0	0	0.775	1	16246	16246		6.7232	0	1	2319600	+		36618	22399	26796	27015	35632	35632					0.13793686530971172
NEKIRELN	8	Unmodified	_NEKIRELN_					0	0	0			REV__AKR1D1|p.K273R|1|0.14|ENSG00000122787|chr7:138107543-138107543|A/G|missense_variant	REV__AKR1D1|p.K273R|1|0.14|ENSG00000122787|chr7:138107543-138107543|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9806213378906	2	508.28018	1014.54581	-0.68505	-0.0003482	-3.5903	-0.0018249	-4.2753	-0.0021731	508.77944262773997	64.546	0.86638	65.286	64.8	65.666	0.74023					22	16	2	0	0	0	0.76996	1	24526	24526		36.127	2.0246	1	1364200	+		36619	15353	26797	27016	35633	35633					0.03911670812124157
NEKISVQAY	9	Unmodified	_NEKISVQAY_					0	0	0		ENSG00000162877|ENST00000367136|PM20D1;ENST00000469861.1_1_1:205797750-205798998:-|nuORF	ENSG00000162877|ENST00000367136|PM20D1	ENSG00000162877|ENST00000367136|PM20D1	MULTI-MSMS	A375_MHC_IP_R2	2	526.720947265625	2	526.274564	1050.53457	-0.43389	-0.00022834	-0.33498	-0.00017629	-0.76887	-0.00040464	526.2743830320169	67.501	2.1321	68.237	67.801	69.933	0.73631					95	41	5	0	0	0	0.27715	1	25817	25817		32.305	3.2239	1	49963000			36620	6607	26798	27017	35634	35634					0.011328487179980584
NEKLINFLYKY	11	Unmodified	_NEKLINFLYKY_					0	0	0			REV__tr|U7SJP3|U7SJP3_FUSNUHelix-turn-helixtype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02041PE=4SV=1	REV__tr|U7SJP3|U7SJP3_FUSNUHelix-turn-helixtype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02041PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	482.66546630859375	3	482.26601	1443.7762	-0.55706	-0.00026865	-0.1799	-8.676E-05	-0.73696	-0.00035541	482.2659593500684	73.229	0.66174	73.964	73.581	74.243	0.73541					22	12	3	0	0	0	0.62292	1	27790	27790		12.856	1.2246	1	1785000	+		36621	28241	26799	27018	35635	35635					0.07206459354279104
NEKLINFLYKY	11	Unmodified	_NEKLINFLYKY_					0	0	0			REV__tr|U7SJP3|U7SJP3_FUSNUHelix-turn-helixtype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02041PE=4SV=1	REV__tr|U7SJP3|U7SJP3_FUSNUHelix-turn-helixtype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02041PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		3	482.26601	1443.7762	-0.35907	-0.00017317	-0.30985	-0.00014943	-0.66892	-0.0003226	482.26602177269444	73.934	0.5573	73.934	73.69	74.247	0	-0.015212	-0.00011134	NaN	12.856	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1382600	+		36622	28241	26799	27018							0.07206459354279104
NEKLINFLYKY	11	Unmodified	_NEKLINFLYKY_					0	0	0			REV__tr|U7SJP3|U7SJP3_FUSNUHelix-turn-helixtype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02041PE=4SV=1	REV__tr|U7SJP3|U7SJP3_FUSNUHelix-turn-helixtype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02041PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	482.26601	1443.7762	-0.55706	-0.00026865	-0.1799	-8.676E-05	-0.73696	-0.00035541	482.2659593500684	73.229	0.66174	73.964	73.581	74.243	0.73541	0.015212	7.6672E-05	NaN	12.856	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1785000	+		36623	28241	26799	27018							0.07206459354279104
NEKLITFNV	9	Unmodified	_NEKLITFNV_					0	0	0			REV__DSC3|p.G398E|1|0.22|ENSG00000134762|chr18:31018141-31018141|C/T|missense_variant	REV__DSC3|p.G398E|1|0.22|ENSG00000134762|chr18:31018141-31018141|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	539.197509765625	2	539.300581	1076.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.705	1	20.705	20.205	21.205	0								0	0	0	0.15486	1	5352	5352		3.5965	0.31518	1		+		36624	16037	26800	27019	35636	35636					0.05138012131760661
NEKLLEKIKYL	11	Unmodified	_NEKLLEKIKYL_					0	0	0			REV__tr|U7ST83|U7ST83_FUSNU23SrRNA(-2'-O)/16SrRNA(-2'-O)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01257PE=3SV=1	REV__tr|U7ST83|U7ST83_FUSNU23SrRNA(-2'-O)/16SrRNA(-2'-O)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01257PE=3SV=1	MSMS	A375_MHC_IP_R2	2	695.9656982421875	2	695.918852	1389.82315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.29	1	125.59	125.09	126.09	0.2951								0	0	0	0.16203	1	48791	48791		8.1555	2.4237	1		+		36625	28461	26801	27020	35637	35637					0.1438331890540212
NEKLTPLKL	9	Unmodified	_NEKLTPLKL_					0	0	0		ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	MULTI-SECPEP	A375_MHC_IP_R1	1	528.725830078125	2	528.326599	1054.63865	-0.74262	-0.00039235	-0.40466	-0.00021379	-1.1473	-0.00060614	528.3262806449003	24.168	0.2031	24.168	24.042	24.245	0					6	3	2	0	0	0	0.75842	1	6838	6838		8.7454	0	1	4662900			36626	868	26802	27021	35638	35638					0.11351175545519254
NEKLTPLKL	9	Unmodified	_NEKLTPLKL_					0	0	0		ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	MULTI-SECPEP	A375_MHC_IP_R2	2	528.184814453125	2	528.326599	1054.63865	-0.82108	-0.0004338	-0.92117	-0.00048668	-1.7422	-0.00092047	528.3261439064645	23.409	0.20083	24.039	23.928	24.129	0.63014					6	3	2	0	0	0	0.74169	1	7572	7572		11.495	0	1	2568600			36627	868	26802	27021	35639	35639					0.11351175545519254
NEKQKDENEKG	11	Unmodified	_NEKQKDENEKG_					0	0	0			REV__nc|ENSG00000170289|Q9NQW8-2|CNGB3	REV__nc|ENSG00000170289|Q9NQW8-2|CNGB3	MULTI-SECPEP	A375_MHC_IP_R1	1	660.2151489257812	2	659.815313	1317.61607	-0.70561	-0.00046557	-0.078994	-5.2121E-05	-0.7846	-0.00051769	659.8153063130063	85.153	0.91861	85.153	84.697	85.616	0					51	17	4	0	0	0	0.98524	1	31121	31121		7.1017	0	1	16736000	+		36628	20982	26803	27022	35640	35640					-0.030031203807311613
NEKYLYSLVP	10	Unmodified	_NEKYLYSLVP_					0	0	0			REV__ENST00000461403.1_1_X:63557232-63569902:-|nuORF	REV__ENST00000461403.1_1_X:63557232-63569902:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	408.59979248046875	3	409.22029	1224.63904	0.11319	4.6321E-05	-0.10273	-4.2041E-05	0.010459	4.28E-06	409.22015702078136	46.499	0.96306	47.264	46.453	47.416	0.76518					22	18	2	0	0	0	0.92832	1	17275	17275		8.4443	6.3583	1	1029100	+		36629	17203	26804	27023	35641	35641					0.03570550474682932
NELAIQKRL	9	Unmodified	_NELAIQKRL_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-MSMS	A375_MHC_IP_R1	1	362.6206970214844	3	362.220624	1083.64004	0.15323	5.5502E-05	-0.4988	-0.00018068	-0.34558	-0.00012518	362.22043313486427	34.147	0.55499	34.147	33.748	34.303	0					17	10	2	0	0	0	0.6343	1	11229	11229		12.873	3.8964	1	4367300			36630	1236	26805	27024	35642	35642					0.10156809634281672
NELAIQKRL	9	Unmodified	_NELAIQKRL_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-MSMS	A375_MHC_IP_R2	2	362.6202392578125	3	362.220624	1083.64004	-0.39766	-0.00014404	-0.039639	-1.4358E-05	-0.4373	-0.0001584	362.220578802604	33.265	0.55957	34.017	33.789	34.348	0.75225					12	10	2	0	0	0	0.50355	1	11910	11910		19.626	6.7534	1	4155600			36631	1236	26805	27024	35643	35643					0.10156809634281672
NELARDLSSEY	11	Unmodified	_NELARDLSSEY_					0	0	0			REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MSMS	A375_MHC_IP_R2	2	648.723388671875	2	648.806956	1295.59936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.71	1	52.462	51.962	52.962	0.75225								0	0	0	0.15183	1	19468	19468		19.362	1.9193	1		+		36632	28544	26806	27025	35644	35644					-0.03661621266678594
NELCIKALLF	10	Unmodified	_NELCIKALLF_					0	0	0			REV__ENSG00000174010|ENST00000328046|KLHL15	REV__ENSG00000174010|ENST00000328046|KLHL15	MSMS	A375_MHC_IP_R1	1	388.6120300292969	3	388.554615	1162.64202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.978	1	28.978	28.478	29.478	0								0	0	0	0.15067	1	9007	9007		16.566	3.6933	1		+		36633	21259	26807	27026	35645	35645					0.0672010232788125
NELDAVQREY	10	Unmodified	_NELDAVQREY_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-MSMS	A375_MHC_IP_R1	1	619.1959228515625	2	618.796392	1235.57823	-0.41122	-0.00025446	0.090293	5.5873E-05	-0.32093	-0.00019859	618.7964233780643	47.302	0.46165	47.302	47.055	47.517	0					20	8	3	0	0	0	3.2845E-05	1	16620	16620		173.14	80.485	1	4220900			36634	1726	26808	27027	35646	35646					-0.030135865755028135
NELDAVQREY	10	Unmodified	_NELDAVQREY_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-SECPEP	A375_MHC_IP_R2	2	619.1956176757812	2	618.796392	1235.57823	-0.51898	-0.00032114	0.12042	7.4517E-05	-0.39855	-0.00024662	618.796328899678	46.682	0.56049	47.443	47.155	47.715	0.76127					23	10	3	0	0	0	0.022695	1	17493	17493		122.57	63.202	1	4471400			36635	1726	26808	27027	35647	35647					-0.030135865755028135
NELDIKKRL	9	Unmodified	_NELDIKKRL_					0	0	0		nc|ENSG00000197362|Q8N393-2|ZNF786;ENSG00000197362|ENST00000491431|ZNF786	nc|ENSG00000197362|Q8N393-2|ZNF786	nc|ENSG00000197362|Q8N393-2|ZNF786	MULTI-SECPEP	A375_MHC_IP_R2	2	376.6002197265625	3	376.896029	1127.66626	0.26285	9.9068E-05	1.2807	0.00048268	1.5435	0.00058175	376.89576772510907	27.48	0.71069	28.158	27.741	28.452	0.67857					28	13	3	0	0	0	0.57806	1	9435	9435		30.703	14.965	1	7334900			36636	9149	26809	27028	35648	35648					0.1075307880573746
NELDQKKVKY	10	Unmodified	_NELDQKKVKY_					0	0	0		ENSG00000101193|ENST00000266069|GID8	ENSG00000101193|ENST00000266069|GID8	ENSG00000101193|ENST00000266069|GID8	MULTI-SECPEP	A375_MHC_IP_R1	1	422.9688720703125	3	422.23471	1263.6823	-0.16895	-7.1337E-05	-0.09355	-3.95E-05	-0.2625	-0.00011084	422.56901942790324	19.414	0.35488	19.414	19.268	19.623	0					11	6	3	0	0	0	0.91516	1	4841	4841		17.863	9.4189	1	5401900			36637	2269	26810	27029	35649	35649					0.06100740251986281
NELDQLNAL	9	Unmodified	_NELDQLNAL_					0	0	0			REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2	REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2	MULTI-MSMS	A375_MHC_IP_R1	1	515.6636962890625	2	515.264196	1028.51384	-0.56213	-0.00028965	0.71695	0.00036942	0.15481	7.977E-05	515.2647709940799	59.067	1.9823	59.067	58.075	60.057	0					70	38	3	0	0	0	0.68046	1	21356	21356		8.7454	8.7454	1	11324000	+		36638	16848	26811	27030	35650	35650					0.0007225833833217621
NELDVLHKF	9	Unmodified	_NELDVLHKF_					0	0	0		ENSG00000137494|ENST00000533342|ANKRD42;nc|ENSG00000137494|Q8N9B4-2|ANKRD42	ENSG00000137494|ENST00000533342|ANKRD42	ENSG00000137494|ENST00000533342|ANKRD42	MULTI-SECPEP	A375_MHC_IP_R1	1	557.682373046875	2	557.798206	1113.58186	-0.73382	-0.00040933	0.12522	6.9849E-05	-0.6086	-0.00033948	557.7980958669015	66.525	0.91769	66.525	66.122	67.04	0					31	17	3	0	0	0	0.42978	1	24046	24046		45.74	17.245	1	3586100			36639	4887	26812	27031	35651	35651					0.029611279890104925
NELDVLHKF	9	Unmodified	_NELDVLHKF_					0	0	0		ENSG00000137494|ENST00000533342|ANKRD42;nc|ENSG00000137494|Q8N9B4-2|ANKRD42	ENSG00000137494|ENST00000533342|ANKRD42	ENSG00000137494|ENST00000533342|ANKRD42	MULTI-SECPEP	A375_MHC_IP_R2	2	372.2782897949219	3	372.201229	1113.58186	0.3053	0.00011363	-0.062903	-2.3413E-05	0.2424	9.022E-05	372.20117896912654	65.459	0.86553	66.197	65.968	66.833	0.73811					27	16	3	0	0	0	0.76642	1	24862	24862		8.9762	1.3673	1	5037000			36640	4887	26812	27031	35652	35652					0.029611279890104925
NELDVLHKF	9	Unmodified	_NELDVLHKF_					0	0	0		ENSG00000137494|ENST00000533342|ANKRD42;nc|ENSG00000137494|Q8N9B4-2|ANKRD42	ENSG00000137494|ENST00000533342|ANKRD42	ENSG00000137494|ENST00000533342|ANKRD42	MULTI-SECPEP	A375_MHC_IP_R2	2	558.197998046875	2	557.798206	1113.58186	-0.91536	-0.00051059	-0.1292	-7.2069E-05	-1.0446	-0.00058266	557.797972215308	65.678	0.66151	66.416	66.018	66.68	0.73812					20	12	2	0	0	0	0.48845	1	24854	24854		26.268	14.027	1	4079900			36641	4887	26812	27031	35653	35653					0.029611279890104925
NELEHVRQQNY	11	Unmodified	_NELEHVRQQNY_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MSMS	A375_MHC_IP_R2	2	715.1666259765625	2	715.344572	1428.67459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.826	1	87.559	87.059	88.059	0.733								0	0	0	0.16249	1	33019	33019		5.7319	0	1		+		36642	19379	26813	27032	35654	35654					-0.02260019015557191
NELEKRSL	8	Unmodified	_NELEKRSL_					0	0	0			REV__nc|ENSG00000122223|Q9BZW8-4|CD244	REV__nc|ENSG00000122223|Q9BZW8-4|CD244	MULTI-SECPEP	A375_MHC_IP_R2	2	495.1579895019531	2	494.774731	987.534909	-1.0586	-0.00052375	1.1147	0.00055151	0.056112	2.7763E-05	494.77505697770357	53.43	0.40952	54.181	53.944	54.353	0.75105					11	7	2	0	0	0	0.50167	1	20112	20112		42.095	0	1	1335100	+		36643	18195	26814	27033	35655	35655					0.04064268437866758
NELENFTKQF	10	Unmodified	_NELENFTKQF_					0	0	0		ENSG00000171109|ENST00000471841|MFN1;nc|ENSG00000171109|Q8IWA4-3|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-SECPEP	A375_MHC_IP_R1	1	635.7080078125	2	635.309135	1268.60372	-0.49909	-0.00031708	0.3429	0.00021785	-0.15619	-9.9227E-05	635.3091572504437	82.316	0.55952	82.316	82.062	82.622	0					19	10	3	0	0	0	0.13439	1	30101	30101		83.278	43.039	1	3280600			36644	7575	26815	27034	35656	35656					-0.019841120531054912
NELENFTKQF	10	Unmodified	_NELENFTKQF_					0	0	0		ENSG00000171109|ENST00000471841|MFN1;nc|ENSG00000171109|Q8IWA4-3|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-SECPEP	A375_MHC_IP_R2	2	635.7088623046875	2	635.309135	1268.60372	-0.85813	-0.00054518	-0.094319	-5.9922E-05	-0.95245	-0.0006051	635.3092762685502	81.713	0.4557	82.456	82.179	82.634	0.74293					15	8	2	0	0	0	0.036009	1	31044	31044		105.35	57.596	1	3609500			36645	7575	26815	27034	35657	35657					-0.019841120531054912
NELFVKLV	8	Unmodified	_NELFVKLV_					0	0	0			REV__ENSG00000147234|ENST00000683843|FRMPD3;REV__ENSG00000278705|ENST00000377745|H4C2	REV__ENSG00000147234|ENST00000683843|FRMPD3	MULTI-SECPEP	A375_MHC_IP_R1	1	481.69012451171875	2	481.289485	960.564418	-0.4279	-0.00020594	0.66552	0.00032031	0.23762	0.00011436	481.2897386848596	81.228	1.1654	81.228	80.846	82.011	0					41	22	3	0	0	0	0.87643	1	29584	29584		25.399	0	1	7736100	+		36646	19580;20071	26816	27035	35658	35658					0.0825583245400594
NELGEFANRSI	11	Unmodified	_NELGEFANRSI_					0	0	0			REV__ENSG00000147485|ENST00000356297|PXDNL	REV__ENSG00000147485|ENST00000356297|PXDNL	MULTI-SECPEP	A375_MHC_IP_R2	2	624.677978515625	2	625.312209	1248.60986	-0.69578	-0.00043508	0.18381	0.00011494	-0.51197	-0.00032014	625.3118731818234	69.213	0.659	69.948	69.525	70.184	0.73511					25	12	4	0	0	0	0.9836	1	26131	26131		4.5289	0	1	3221600	+		36647	19591	26817	27036	35659	35659					-0.004495938215768547
NELGQEAIL	9	Unmodified	_NELGQEAIL_					0	0	0			REV__ENSG00000172482|ENST00000307503|AGXT	REV__ENSG00000172482|ENST00000307503|AGXT	MULTI-SECPEP	A375_MHC_IP_R1	1	493.1786804199219	2	493.761289	985.508025	-0.39515	-0.00019511	-0.56274	-0.00027786	-0.95788	-0.00047297	493.7615180459813	81.17	0.55758	81.17	80.999	81.556	0					16	10	2	0	0	0	0.083712	1	29667	29667		56.177	7.8312	1	1829200	+		36648	21147	26818	27037	35660	35660					0.014691598266608707
NELGVGGTSQW	11	Unmodified	_NELGVGGTSQW_					0	0	0		SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant;ENSG00000101310|ENST00000650089|SEC23B	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	574.6724243164062	2	574.272552	1146.53055	-0.29274	-0.00016811	-0.27737	-0.00015929	-0.57011	-0.0003274	574.2723429900086	76.953	1.3754	76.953	76.622	77.998	0					56	26	4	0	0	0	9.3356E-13	1	28006	28006		227.14	145.25	1	32456000			36649	2280	26819	27038	35661	35661					-0.03685240775712373
NELGVGGTSQW	11	Unmodified	_NELGVGGTSQW_					0	0	0		SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant;ENSG00000101310|ENST00000650089|SEC23B	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	575.2008666992188	2	574.272552	1146.53055	-0.20931	-0.0001202	-0.55272	-0.00031741	-0.76203	-0.00043762	574.2722647269788	76.279	1.1669	77.019	76.538	77.705	0.74052					63	22	4	0	0	0	0.4429	1	29041	29041		35.612	10.213	1	30268000			36650	2280	26819	27038	35662	35662					-0.03685240775712373
NELGVYLMKL	10	Unmodified	_NELGVYLMKL_					0	0	0		GPR4|p.N58K|1|0.23|ENSG00000177464|chr19:45591693-45591693|G/T|missense_variant	GPR4|p.N58K|1|0.23|ENSG00000177464|chr19:45591693-45591693|G/T|missense_variant	GPR4|p.N58K|1|0.23|ENSG00000177464|chr19:45591693-45591693|G/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	590.6630249023438	2	590.325742	1178.63693	-0.55872	-0.00032983	-1.7595	-0.0010387	-2.3182	-0.0013685	590.3247135591193	76.432	0.50821	77.173	76.893	77.401	0.74052					20	9	3	0	0	0	0.91773	1	29021	29021		10.8	2.0541	1	1926600			36651	14067	26820	27039	35663	35663					0.054757984652496816
NELGVYLMKL	10	Unmodified	_NELGVYLMKL_					0	0	0		GPR4|p.N58K|1|0.23|ENSG00000177464|chr19:45591693-45591693|G/T|missense_variant	GPR4|p.N58K|1|0.23|ENSG00000177464|chr19:45591693-45591693|G/T|missense_variant	GPR4|p.N58K|1|0.23|ENSG00000177464|chr19:45591693-45591693|G/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	590.325742	1178.63693	-0.35049	-0.0002069	-2.2049	-0.0013016	-2.5554	-0.0015085	590.3246563607563	77.261	0.30269	77.261	77.133	77.436	0	0.044011	-0.00028209	NaN	10.8	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1630800			36652	14067	26820	27039							0.054757984652496816
NELIHYSI	8	Unmodified	_NELIHYSI_					0	0	0		FAT4|p.G1243E|1|0.46|ENSG00000196159|chr4:125320139-125320139|G/A|missense_variant	FAT4|p.G1243E|1|0.46|ENSG00000196159|chr4:125320139-125320139|G/A|missense_variant	FAT4|p.G1243E|1|0.46|ENSG00000196159|chr4:125320139-125320139|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	494.6768798828125	2	494.758549	987.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.635	1	55.635	55.135	56.135	0								0	0	0	0.12351	1	19903	19903		57.471	9.1255	1				36653	13980	26821	27040	35664	35664					0.008294810348388637
NELIHYSI	8	Unmodified	_NELIHYSI_					0	0	0		FAT4|p.G1243E|1|0.46|ENSG00000196159|chr4:125320139-125320139|G/A|missense_variant	FAT4|p.G1243E|1|0.46|ENSG00000196159|chr4:125320139-125320139|G/A|missense_variant	FAT4|p.G1243E|1|0.46|ENSG00000196159|chr4:125320139-125320139|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	495.1585693359375	2	494.758549	987.502546	-0.29903	-0.00014795	0.45677	0.00022599	0.15774	7.8043E-05	494.7587205212437	70.819	0.66527	70.819	70.545	71.211	0					28	12	3	0	0	0	0.14819	1	25692	25692		77.984	10.64	1	6409600			36654	13980	26821	27040	35665	35665					0.008294810348388637
NELIHYSI	8	Unmodified	_NELIHYSI_					0	0	0		FAT4|p.G1243E|1|0.46|ENSG00000196159|chr4:125320139-125320139|G/A|missense_variant	FAT4|p.G1243E|1|0.46|ENSG00000196159|chr4:125320139-125320139|G/A|missense_variant	FAT4|p.G1243E|1|0.46|ENSG00000196159|chr4:125320139-125320139|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	495.15863037109375	2	494.758549	987.502546	-0.16074	-7.9528E-05	0.8165	0.00040397	0.65576	0.00032444	494.7587088277959	53.973	0.45544	53.973	53.758	54.213	0					12	8	2	0	0	0	0.30564	1	19286	19286		46.021	3.9264	1	1701600			36655	13980	26821	27040	35666	35666					0.008294810348388637
NELIHYSI	8	Unmodified	_NELIHYSI_					0	0	0		FAT4|p.G1243E|1|0.46|ENSG00000196159|chr4:125320139-125320139|G/A|missense_variant	FAT4|p.G1243E|1|0.46|ENSG00000196159|chr4:125320139-125320139|G/A|missense_variant	FAT4|p.G1243E|1|0.46|ENSG00000196159|chr4:125320139-125320139|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	494.6764221191406	2	494.758549	987.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.722	1	55.473	54.973	55.973	0.75075								0	0	0	0.086193	1	20657	20657		67.344	9.8725	1				36656	13980	26821	27040	35667	35667					0.008294810348388637
NELIHYSI	8	Unmodified	_NELIHYSI_					0	0	0		FAT4|p.G1243E|1|0.46|ENSG00000196159|chr4:125320139-125320139|G/A|missense_variant	FAT4|p.G1243E|1|0.46|ENSG00000196159|chr4:125320139-125320139|G/A|missense_variant	FAT4|p.G1243E|1|0.46|ENSG00000196159|chr4:125320139-125320139|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	495.1584777832031	2	494.758549	987.502546	-0.41854	-0.00020707	-0.0013634	-6.7457E-07	-0.4199	-0.00020775	494.7584618776102	70.084	0.86201	70.818	70.54	71.402	0.73421					31	16	3	0	0	0	0.20664	1	26565	26565		67.344	9.8725	1	5518100			36657	13980	26821	27040	35668	35668					0.008294810348388637
NELIHYSI	8	Unmodified	_NELIHYSI_					0	0	0		FAT4|p.G1243E|1|0.46|ENSG00000196159|chr4:125320139-125320139|G/A|missense_variant	FAT4|p.G1243E|1|0.46|ENSG00000196159|chr4:125320139-125320139|G/A|missense_variant	FAT4|p.G1243E|1|0.46|ENSG00000196159|chr4:125320139-125320139|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	495.1579895019531	2	494.758549	987.502546	-1.0712	-0.00053001	1.0144	0.00050189	-0.056842	-2.8123E-05	494.7587873902767	53.217	0.45918	53.969	53.688	54.147	0.75105					14	8	2	0	0	0	0.34394	1	20112	20112		50.855	0	1	2476500			36658	13980	26821	27040	35669	35669					0.008294810348388637
NELIVESSL	9	Unmodified	_NELIVESSL_					0	0	0			REV__nc|ENSG00000150093|P05556-2|ITGB1	REV__nc|ENSG00000150093|P05556-2|ITGB1	MULTI-SECPEP	A375_MHC_IP_R1	1	501.6561584472656	2	502.268947	1002.52334	-0.37165	-0.00018667	-0.17464	-8.7714E-05	-0.54629	-0.00027438	502.26847768373034	57.538	0.61025	57.538	57.263	57.873	0					16	11	2	0	0	0	0.60917	1	20655	20655		13.906	0	1	1310300	+		36659	19707	26822	27041	35670	35670					0.02218026623870628
NELKEVNHQY	10	Unmodified	_NELKEVNHQY_					0	0	0			REV__nc|ENSG00000227345|Q86W56-3|PARG	REV__nc|ENSG00000227345|Q86W56-3|PARG	MULTI-MSMS	A375_MHC_IP_R1	1	425.6103210449219	3	425.210565	1272.60986	-0.18148	-7.7168E-05	-0.25805	-0.00010973	-0.43953	-0.00018689	425.2104899384365	33.223	0.65948	33.223	32.938	33.597	0					33	12	4	0	0	0	0.48529	1	10822	10822		19.626	0.90473	1	11762000	+		36660	22729	26823	27042	35671	35671					-0.015535938215634815
NELKITSIL	9	Unmodified	_NELKITSIL_					0	0	0			REV__nc|ENSG00000196220|O43295-2|SRGAP3	REV__nc|ENSG00000196220|O43295-2|SRGAP3	MULTI-SECPEP	A375_MHC_IP_R1	1	515.1798095703125	2	515.810782	1029.60701	-0.52768	-0.00027218	0.25601	0.00013205	-0.27166	-0.00014013	515.8107701340757	73.158	1.4194	73.158	73.031	74.451	0					36	27	2	0	0	0	0.46045	1	26924	26924		29.082	0	1	3610700	+		36661	22172	26824	27043	35672	35672					0.09339182791586609
NELKRQMA	8	Unmodified	_NELKRQMA_					0	0	0			REV__ACTN3|p.D329N|1|0.35|ENSG00000248746|chr11:66557786-66557786|G/A|missense_variant	REV__ACTN3|p.D329N|1|0.35|ENSG00000248746|chr11:66557786-66557786|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	495.1644287109375	2	495.263476	988.512399	-0.65068	-0.00032226	3.3796	0.0016738	2.7289	0.0013515	495.2650320910116	54.763	0.45916	55.514	55.269	55.729	0.75075					13	8	2	0	0	0	0.71318	1	20697	20697		30.637	2.1497	1	2515400	+		36662	15304	26825	27044	35673	35673					0.017683457685961912
NELLHSFL	8	Unmodified	_NELLHSFL_					0	0	0			REV__ENST00000263239.6_1_2:118579323-118579476:+|nuORF	REV__ENST00000263239.6_1_2:118579323-118579476:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	487.160888671875	2	486.761092	971.507631	-0.73956	-0.00035999	-0.11022	-5.3653E-05	-0.84978	-0.00041364	486.76096896165404	70.896	1.9762	71.631	70.895	72.871	0.73421					60	38	2	0	0	0	0.66714	1	26900	26900		42.095	2.1372	1	4048000	+		36663	23221	26826	27045	35674	35674					0.02073784897470432
NELLHSFL	8	Unmodified	_NELLHSFL_					0	0	0			REV__ENST00000263239.6_1_2:118579323-118579476:+|nuORF	REV__ENST00000263239.6_1_2:118579323-118579476:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	487.1601867675781	2	486.761092	971.507631	-0.57067	-0.00027778	-0.64085	-0.00031194	-1.2115	-0.00058972	486.7606569330912	80.04	0.91222	80.784	80.453	81.365	0.74474					33	17	3	0	0	0	0.16799	1	30405	30405		74.423	14.033	1	7948400	+		36664	23221	26826	27045	35675	35675					0.02073784897470432
NELLHSFL	8	Unmodified	_NELLHSFL_					0	0	0			REV__ENST00000263239.6_1_2:118579323-118579476:+|nuORF	REV__ENST00000263239.6_1_2:118579323-118579476:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	486.761092	971.507631	-0.57067	-0.00027778	-0.64085	-0.00031194	-1.2115	-0.00058972	486.7606569330912	80.04	0.91222	80.784	80.453	81.365	0.74474	-0.018064	-0.0001877	NaN	74.423	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7948400	+		36665	23221	26826	27045							0.02073784897470432
NELLLLTFS	9	Unmodified	_NELLLLTFS_					0	0	0		ENSG00000174957|ENST00000312298|OR5J2	ENSG00000174957|ENST00000312298|OR5J2	ENSG00000174957|ENST00000312298|OR5J2	MULTI-SECPEP	A375_MHC_IP_R1	1	525.6845092773438	2	525.297507	1048.58046	-0.72563	-0.00038117	0.0017628	9.2598E-07	-0.72387	-0.00038025	525.7990951450431	68.387	0.40634	68.387	68.209	68.616	0					12	7	2	0	0	0	0.63327	1	24855	24855		18.146	0	1	1033500			36666	7919	26827	27046	35676	35676					0.05811493900228015
NELLLRTL	8	Unmodified	_NELLLRTL_					0	0	0			REV__ENST00000545213.5_1_14:24789074-24794639:-|nuORF	REV__ENST00000545213.5_1_14:24789074-24794639:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	486.69744873046875	2	486.297842	970.581131	-0.76081	-0.00036998	0.019318	9.3944E-06	-0.74149	-0.00036059	486.2978147653072	72.362	0.862	73.098	72.771	73.633	0.73541					28	16	2	0	0	0	0.84294	1	27414	27414		24.021	0	1	5583200	+		36667	18492	26828	27047	35677	35677					0.09466333339958055
NELMVDFY	8	Unmodified	_NELMVDFY_					0	0	0			REV__nc|ENSG00000121417|Q13398-6|ZNF211	REV__nc|ENSG00000121417|Q13398-6|ZNF211	MSMS	A375_MHC_IP_R2	2	515.6644287109375	2	515.731143	1029.44773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.633	1	59.382	58.882	59.882	0.74894								0	0	0	0.16876	1	22182	22182		24.674	6.5389	1		+		36668	18159	26829	27048	35678	35678					-0.065812738280556
NELMVTTY	8	Unmodified	_NELMVTTY_					0	0	0			REV__ENST00000596094.5_1_19:56884582-56885033:+|nuORF	REV__ENST00000596094.5_1_19:56884582-56885033:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	486.12200927734375	2	485.731143	969.447733	0.08093	3.931E-05	0.49265	0.0002393	0.57358	0.00027861	485.7311108656339	69.147	0.96367	69.147	68.616	69.579	0					26	18	2	0	0	0	0.86765	1	25171	25171		24.674	0	1	1060000	+		36669	25061	26830	27049	35679	35679					-0.03821273828066296
NELNIIHKF	9	Unmodified	_NELNIIHKF_					0	0	0		nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31;ENST00000498612.1_1_19:54622012-54631467:+|nuORF	nc|ENSG00000105618|Q8WWY3-2|PRPF31	nc|ENSG00000105618|Q8WWY3-2|PRPF31	MULTI-MSMS	A375_MHC_IP_R1	1	376.94488525390625	3	376.545108	1126.61349	0.42839	0.00016131	0.20046	7.5481E-05	0.62884	0.00023679	376.54515575711747	56.756	1.7283	56.756	55.738	57.467	0					86	33	6	0	0	0	0.050868	2	20278	20278;20516		51.488	29.898	1	71951000			36670	14526	26831	27050	35680;35681	35680					0.055251207429591886
NELNIIHKF	9	Unmodified	_NELNIIHKF_					0	0	0		nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31;ENST00000498612.1_1_19:54622012-54631467:+|nuORF	nc|ENSG00000105618|Q8WWY3-2|PRPF31	nc|ENSG00000105618|Q8WWY3-2|PRPF31	MULTI-SECPEP	A375_MHC_IP_R1	1	564.713623046875	2	564.314023	1126.61349	-0.32364	-0.00018263	0.12862	7.2585E-05	-0.19501	-0.00011005	564.3140095813782	56.721	1.0184	56.721	56.244	57.263	0					38	19	3	0	0	0	0.0055952	1	20293	20293		151.48	82.375	1	22905000			36671	14526	26831	27050	35682	35682					0.055251207429591886
NELNIIHKF	9	Unmodified	_NELNIIHKF_					0	0	0		nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31;ENST00000498612.1_1_19:54622012-54631467:+|nuORF	nc|ENSG00000105618|Q8WWY3-2|PRPF31	nc|ENSG00000105618|Q8WWY3-2|PRPF31	MULTI-MSMS	A375_MHC_IP_R2	2	376.9449462890625	3	376.545108	1126.61349	0.095029	3.5783E-05	-0.027536	-1.0369E-05	0.067493	2.5414E-05	376.5450896075656	55.764	1.3754	56.514	56.186	57.561	0.75015					44	26	2	0	0	0	0.032333	2	21034	21034;21253		59.052	34.171	1	81106000			36672	14526	26831	27050	35683;35684	35683					0.055251207429591886
NELNIIHKF	9	Unmodified	_NELNIIHKF_					0	0	0		nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31;ENST00000498612.1_1_19:54622012-54631467:+|nuORF	nc|ENSG00000105618|Q8WWY3-2|PRPF31	nc|ENSG00000105618|Q8WWY3-2|PRPF31	MULTI-SECPEP	A375_MHC_IP_R2	2	564.71337890625	2	564.314023	1126.61349	-0.61348	-0.0003462	-0.14131	-7.9744E-05	-0.75479	-0.00042594	564.3139818224788	55.815	0.8142	56.565	56.237	57.051	0.75015					36	15	4	0	0	0	0.0016277	1	21055	21055		163.69	94.582	1	22061000			36673	14526	26831	27050	35685	35685					0.055251207429591886
NELNRVLI	8	Unmodified	_NELNRVLI_					0	0	0			REV__tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1	REV__tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	486.15283203125	2	485.787641	969.56073	0.0029163	1.4167E-06	-0.23313	-0.00011325	-0.23021	-0.00011183	485.7874484461971	70.145	0.6617	70.145	69.832	70.494	0					37	12	4	0	0	0	0.78043	1	25581	25581		32.117	0	1	10743000	+		36674	28581	26832	27051	35686	35686					0.07473162680150836
NELNRVLI	8	Unmodified	_NELNRVLI_					0	0	0			REV__tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1	REV__tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	486.1529541015625	2	485.787641	969.56073	-0.5041	-0.00024489	-0.24964	-0.00012127	-0.75375	-0.00036616	485.7874600164568	69.269	0.91539	70.003	69.625	70.54	0.73427					37	17	4	0	0	0	0.78043	1	26379	26379		32.117	0	1	13188000	+		36675	28581	26832	27051	35687	35687					0.07473162680150836
NELPGLKW	8	Unmodified	_NELPGLKW_					0	0	0		nc|ENSG00000037474|Q08J23-3|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	MULTI-SECPEP	A375_MHC_IP_R1	1	479.1634216308594	2	478.763635	955.512717	-0.58606	-0.00028058	0.36952	0.00017691	-0.21654	-0.00010367	478.7637818118081	80.82	1.8745	80.82	80.39	82.265	0					100	36	4	0	0	0	0.1978	1	29449	29449		96.111	46.442	1	256930000			36676	1146	26833	27052	35688	35688					0.033180887601020004
NELPGLKW	8	Unmodified	_NELPGLKW_					0	0	0		nc|ENSG00000037474|Q08J23-3|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	MULTI-SECPEP	A375_MHC_IP_R2	2	479.1629943847656	2	478.763635	955.512717	-0.52341	-0.00025059	-0.385	-0.00018432	-0.9084	-0.00043491	478.7634029607201	80.04	2.2847	80.784	80.401	82.686	0.74474					105	44	4	0	0	0	0.14575	1	30289	30289		85.642	41.234	1	210840000			36677	1146	26833	27052	35689	35689					0.033180887601020004
NELPKNTLI	9	Unmodified	_NELPKNTLI_					0	0	0			REV__PPP1R3A|p.I1014T|1|0.43|ENSG00000154415|chr7:113878051-113878051|A/G|missense_variant	REV__PPP1R3A|p.I1014T|1|0.43|ENSG00000154415|chr7:113878051-113878051|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	521.6712646484375	2	521.300581	1040.58661	-0.66858	-0.00034853	0.086515	4.51E-05	-0.58207	-0.00030343	521.3007346050509	80.566	0.60822	80.566	80.289	80.897	0					25	11	3	0	0	0	0.775	1	29535	29535		10.8	2.2062	1	4644200	+		36678	27829	26834	27053	35690	35690					0.06794012131763338
NELPRSIQY	9	Unmodified	_NELPRSIQY_					0	0	0		FAP|p.P149S|1|0.49|ENSG00000078098|chr2:162219894-162219894|G/A|missense_variant	FAP|p.P149S|1|0.49|ENSG00000078098|chr2:162219894-162219894|G/A|missense_variant	FAP|p.P149S|1|0.49|ENSG00000078098|chr2:162219894-162219894|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	560.7416381835938	2	560.293288	1118.57202	-0.70576	-0.00039543	-0.3374	-0.00018904	-1.0432	-0.00058448	560.293113425096	96.455	0.3038	97.211	97.064	97.368	0.75586					8	5	2	0	0	0	0.73008	1	36660	36660		17.113	4.8722	1	644420			36679	13979	26835	27054	35691	35691					0.017479399836247467
NELPSAIKF	9	Unmodified	_NELPSAIKF_					0	0	0		ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	MSMS	A375_MHC_IP_R2	2	509.7040710449219	2	509.782025	1017.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.998	1	74.736	74.236	75.236	0.73752								0	0	0	0.05202	1	28086	28086		53.404	17.277	1				36680	2990	26836	27055	35692	35692					0.04142340586008686
NELPSWKV	8	Unmodified	_NELPSWKV_					0	0	0			REV__ENSG00000241685|ENST00000262942|ARPC1A	REV__ENSG00000241685|ENST00000262942|ARPC1A	MULTI-MSMS	A375_MHC_IP_R1	1	487.1609191894531	2	486.761092	971.507631	0.10597	5.158E-05	-0.10127	-4.9293E-05	0.0046982	2.2869E-06	486.76103022209895	69.181	1.7731	69.181	68.412	70.185	0					101	34	4	0	0	0	0.16549	3	25165	24947;24977;25165		78.728	8.0125	1	21545000	+		36681	22789	26837	27056	35693;35694;35695	35695					0.020737848974818007
NELPSWKV	8	Unmodified	_NELPSWKV_					0	0	0			REV__ENSG00000241685|ENST00000262942|ARPC1A	REV__ENSG00000241685|ENST00000262942|ARPC1A	MULTI-MSMS	A375_MHC_IP_R2	2	487.1605529785156	2	486.761092	971.507631	-0.8895	-0.00043297	0.34311	0.00016701	-0.54639	-0.00026596	486.76116061488915	49.515	0.60996	50.272	50.096	50.706	0.75737					19	11	2	0	0	0	0.42086	2	18629	18629;18719		52.268	3.9225	1	5086100	+		36682	22789	26837	27056	35696;35697	35696					0.020737848974818007
NELPSWKV	8	Unmodified	_NELPSWKV_					0	0	0			REV__ENSG00000241685|ENST00000262942|ARPC1A	REV__ENSG00000241685|ENST00000262942|ARPC1A	MULTI-MSMS	A375_MHC_IP_R2	2	487.1607971191406	2	486.761092	971.507631	-0.48556	-0.00023635	0.18821	9.1611E-05	-0.29735	-0.00014474	486.7611662072669	68.423	1.623	69.158	68.459	70.082	0.73511					95	31	4	0	0	0	0.2858	2	25811	25792;25811		60.074	9.2189	1	22358000	+		36683	22789	26837	27056	35698;35699	35699					0.020737848974818007
NELPSWKV	8	Unmodified	_NELPSWKV_					0	0	0			REV__ENSG00000241685|ENST00000262942|ARPC1A	REV__ENSG00000241685|ENST00000262942|ARPC1A	MULTI-SECPEP	A375_MHC_IP_R2	2	487.1605529785156	2	486.761092	971.507631	-0.8895	-0.00043297	0.34311	0.00016701	-0.54639	-0.00026596	486.76116061488915	49.515	0.60996	50.272	50.096	50.706	0.75737					19	11	2	0	0	0	0.51146	1	18629	18629		52.268	7.8613	1	5086100	+		36684	22789	26837	27056	35700	35700					0.020737848974818007
NELQDIEKIM	10	Unmodified	_NELQDIEKIM_					0	0	0		nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1	MSMS	A375_MHC_IP_R1	1	617.210693359375	2	616.813196	1231.61184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.1	1	56.1	55.6	56.6	0								0	0	0	0.14864	1	20088	20088		20.415	0	1				36685	2352;6011	26838	27057	35701	35701					0.005296988720147056
NELQPPFN	8	Unmodified	_NELQPPFN_					0	0	0		nc|ENSG00000141376|Q9H6U6-6|BCAS3;ENSG00000141376|ENST00000407086|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3	nc|ENSG00000141376|Q9H6U6-6|BCAS3	nc|ENSG00000141376|Q9H6U6-6|BCAS3	MULTI-SECPEP	A375_MHC_IP_R1	1	479.1634216308594	2	479.735074	957.455596	-0.5774	-0.000277	0.41059	0.00019697	-0.16681	-8.0026E-05	479.7352121034831	80.746	0.60867	80.746	80.492	81.1	0					22	11	3	0	0	0	0.84748	1	29449	29449		36.044	3.9272	1	2763200			36686	5232	26839	27058	35702	35702					-0.024833785162854838
NELQPYNI	8	Unmodified	_NELQPYNI_					0	0	0			REV__ENSG00000138246|ENST00000260818|DNAJC13	REV__ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	A375_MHC_IP_R2	2	495.1580810546875	2	495.748182	989.481811	-0.43762	-0.00021695	-2.1349	-0.0010584	-2.5725	-0.0012753	495.7469856815525	79.999	0.30376	80.744	80.556	80.86	0.74474					7	5	2	0	0	0	0.8211	1	30329	30329		23.148	0	1	1802000	+		36687	19079	26840	27059	35703	35703					-0.013351093448136453
NELQTQHY	8	Unmodified	_NELQTQHY_					0	0	0			REV__ENSG00000196600|ENST00000306494|SLC22A25	REV__ENSG00000196600|ENST00000306494|SLC22A25	MULTI-MSMS	A375_MHC_IP_R2	2	516.6622314453125	2	516.740888	1031.46722	-1.6369	-0.00084584	0.32986	0.00017045	-1.307	-0.00067539	516.7410554069489	29.219	0.5558	29.918	29.73	30.286	0.69872					24	10	3	0	0	0	0.74466	1	10115	10115		21.747	0	1	23150000	+		36688	22213	26841	27060	35704	35704					-0.04725181492926822
NELRKKRIKRA	11	Unmodified	_NELRKKRIKRA_					0	0	0			REV__ENSG00000118298|ENST00000369111|CA14	REV__ENSG00000118298|ENST00000369111|CA14	MSMS	A375_MHC_IP_R2	2	706.2782592773438	2	706.452051	1410.88955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.524	1	74.259	73.759	74.759	0.73541								0	0	0	0.16339	1	27907	27907		1.0715	0.67075	1		+		36689	15664	26842	27061	35705	35705					0.2005399231068168
NELRLIAQRY	10	Unmodified	_NELRLIAQRY_					0	0	0		ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	426.31048583984375	3	425.910449	1274.70952	0.00042527	1.8113E-07	0.087994	3.7478E-05	0.088419	3.7659E-05	425.9105202565929	51.98	0.40798	51.98	51.778	52.186	0					12	7	2	0	0	0	0.25644	1	18489	18489		43.477	31.249	1	2183900			36690	1168	26843	27062	35706	35706					0.08315268583055513
NELRLIAQRY	10	Unmodified	_NELRLIAQRY_					0	0	0		ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	426.3101806640625	3	425.910449	1274.70952	-0.30177	-0.00012853	0.66512	0.00028328	0.36335	0.00015476	425.91038301910754	51.169	0.45534	51.922	51.664	52.119	0.75293					13	8	2	0	0	0	0.095173	1	19257	19257		64.692	43.82	1	1909400			36691	1168	26843	27062	35707	35707					0.08315268583055513
NELRRCPE	8	Unmodified	_NELRRCPE_					0	0	0			REV__ENSG00000187605|ENST00000409262|TET3	REV__ENSG00000187605|ENST00000409262|TET3	MULTI-MSMS	A375_MHC_IP_R2	2	509.689453125	2	508.750733	1015.48691	-0.94812	-0.00048236	0.10497	5.3406E-05	-0.84315	-0.00042895	508.7473577686882	34.784	0.71001	35.547	35.068	35.778	0.76338					32	13	3	0	0	0	0.76654	1	12523	12523		15.847	1.0089	1	1362000	+		36692	22032	26844	27063	35708	35708					-0.020211287538359102
NELRSGHF	8	Unmodified	_NELRSGHF_					0	0	0			REV__ENSG00000138617|ENST00000649807|PARP16	REV__ENSG00000138617|ENST00000649807|PARP16	MSMS	A375_MHC_IP_R2	2	480.18133544921875	2	480.238316	958.462078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.102	1	80.847	80.347	81.347	0.74474								0	0	0	0.16876	1	30407	30407		18.135	2.2878	1		+		36693	19102	26845	27064	35709	35709					-0.018814405648981847
NELRTIPHL	9	Unmodified	_NELRTIPHL_					0	0	0			REV__ENSG00000101350|ENST00000375712|KIF3B	REV__ENSG00000101350|ENST00000375712|KIF3B	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6412353515625	2	546.811648	1091.60874	-0.70996	-0.00038821	3.803	0.0020795	3.093	0.0016913	547.315015469961	86.654	0.30406	86.654	86.477	86.781	0					6	5	2	0	0	0	0.73363	1	31761	31761		10.824	8.5212	1	1460100	+		36694	17164	26846	27065	35710	35710					0.06660236600191638
NELRVAPEKHP	11	Unmodified	_NELRVAPEKHP_					0	0	0		ACTB|p.E100K|1|0.49|ENSG00000075624|chr7:5529226-5529226|C/T|missense_variant	ACTB|p.E100K|1|0.49|ENSG00000075624|chr7:5529226-5529226|C/T|missense_variant	ACTB|p.E100K|1|0.49|ENSG00000075624|chr7:5529226-5529226|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	430.9701232910156	3	430.570204	1288.68878	-0.56172	-0.00024186	-0.19094	-8.2214E-05	-0.75266	-0.00032407	430.5702062080535	21.773	0.46022	22.392	22.132	22.592	0.61932					16	8	3	0	0	0	0.7279	1	6934	6934		9.0676	5.2216	1	1193700			36695	37	26847	27066	35711	35711					0.05598678203364216
NELSIEVSSGV	11	Unmodified	_NELSIEVSSGV_					0	0	0			REV__ENSG00000184661|ENST00000330560|CDCA2	REV__ENSG00000184661|ENST00000330560|CDCA2	MULTI-SECPEP	A375_MHC_IP_R2	2	567.6770629882812	2	567.287868	1132.56118	-0.41809	-0.00023718	1.3391	0.00075968	0.92106	0.00052251	567.7891298728939	32.552	0.45765	33.289	33.01	33.468	0.73692					16	8	3	0	0	0	0.65968	1	11480	11480		34.932	8.6639	1	8415000	+		36696	21830	26848	27067	35712	35712					0.00020492818657658063
NELSPDQFLA	10	Unmodified	_NELSPDQFLA_					0	0	0			REV__nc|ENSG00000173698|Q8IZP9-9|ADGRG2	REV__nc|ENSG00000173698|Q8IZP9-9|ADGRG2	MULTI-MSMS	A375_MHC_IP_R2	2	567.6770629882812	2	567.277303	1132.54005	-0.40705	-0.00023091	-0.43566	-0.00024714	-0.84271	-0.00047805	567.2770517888015	32.34	0.56063	33.077	32.806	33.367	0.73691					21	10	3	0	0	0	0.36067	1	11480	11480		36.506	1.5741	1	9130000	+		36697	21240	26849	27068	35713	35713					-0.02091472490178603
NELVFHIT	8	Unmodified	_NELVFHIT_					0	0	0			REV__ENSG00000183090|ENST00000329798|FREM3	REV__ENSG00000183090|ENST00000329798|FREM3	MULTI-MSMS	A375_MHC_IP_R1	1	487.1607666015625	2	486.761092	971.507631	-0.37764	-0.00018382	-0.22823	-0.00011109	-0.60586	-0.00029491	486.76077345251366	80.82	1.0652	80.82	80.541	81.607	0					40	20	3	0	0	0	0.28202	1	29496	29496		60.39	0	1	6489700	+		36698	21735	26850	27069	35714	35714					0.02073784897470432
NELVFHIT	8	Unmodified	_NELVFHIT_					0	0	0			REV__ENSG00000183090|ENST00000329798|FREM3	REV__ENSG00000183090|ENST00000329798|FREM3	MULTI-SECPEP	A375_MHC_IP_R1	1	486.12200927734375	2	486.761092	971.507631	0.10597	5.158E-05	-0.10127	-4.9293E-05	0.0046982	2.2869E-06	486.76103022209895	69.181	1.7731	69.181	68.412	70.185	0					101	34	4	0	0	0	0.25559	1	25171	25171		67.344	2.1088	1	21545000	+		36699	21735	26850	27069	35715	35715					0.02073784897470432
NELVFRDNY	9	Unmodified	_NELVFRDNY_					0	0	0			REV__PDE1C|p.S295F|1|0.37|ENSG00000154678|chr7:31848064-31848064|G/A|missense_variant	REV__PDE1C|p.S295F|1|0.37|ENSG00000154678|chr7:31848064-31848064|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	585.6824951171875	2	585.28292	1168.55129	-0.85675	-0.00050144	0.76427	0.00044732	-0.092479	-5.4126E-05	585.2834410335057	59.763	0.91314	60.51	60.198	61.111	0.74714					37	17	3	0	0	0	0.61452	1	22683	22683		26.268	6.9062	1	7786000	+		36700	27752	26851	27070	35716	35716					-0.026246503960464906
NELVFRDNY	9	Unmodified	_NELVFRDNY_					0	0	0			REV__PDE1C|p.S295F|1|0.37|ENSG00000154678|chr7:31848064-31848064|G/A|missense_variant	REV__PDE1C|p.S295F|1|0.37|ENSG00000154678|chr7:31848064-31848064|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	585.28292	1168.55129	-0.26701	-0.00015627	0.45597	0.00026687	0.18896	0.00011059	585.2831733623591	60.506	0.76279	60.506	60.261	61.024	0	-0.0019187	-0.00013788	NaN	26.268	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8195800	+		36701	27752	26851	27070							-0.026246503960464906
NELVSTHGY	9	Unmodified	_NELVSTHGY_					0	0	0		nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1;ENST00000586212.1_1_19:3532513-3533660:+|nuORF	nc|ENSG00000105325|Q9UM11-3|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	MULTI-SECPEP	A375_MHC_IP_R1	1	510.642822265625	2	510.243264	1018.47197	-0.34027	-0.00017362	-0.19132	-9.7622E-05	-0.5316	-0.00027124	510.24306262989944	35.138	1.0195	35.138	34.81	35.83	0					48	19	5	0	0	0	0.027983	1	11636	11636		81.89	35.869	1	30237000			36702	2590	26852	27071	35717	35717					-0.03652297350186018
NELVSTHGY	9	Unmodified	_NELVSTHGY_					0	0	0		nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1;ENST00000586212.1_1_19:3532513-3533660:+|nuORF	nc|ENSG00000105325|Q9UM11-3|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	MULTI-SECPEP	A375_MHC_IP_R2	2	510.64276123046875	2	510.243264	1018.47197	-0.97795	-0.00049899	-0.038396	-1.9591E-05	-1.0163	-0.00051858	510.24322779192784	34.47	0.66106	35.222	34.955	35.616	0.75225					35	12	4	0	0	0	0.012104	1	12402	12402		81.89	35.869	1	29536000			36703	2590	26852	27071	35718	35718					-0.03652297350186018
NELWLSCLR	9	Unmodified	_NELWLSCLR_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MSMS	A375_MHC_IP_R2	2	567.203369140625	2	567.292233	1132.56991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.651	1	51.405	50.905	51.905	0.75406								0	0	0	0.15273	1	19049	19049		17.113	6.289	1		+		36704	19676	26853	27072	35719	35719					0.008931879741339799
NELYDHSL	8	Unmodified	_NELYDHSL_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	MULTI-SECPEP	A375_MHC_IP_R1	1	495.1585693359375	2	495.729989	989.445425	-0.30352	-0.00015046	-0.38632	-0.00019151	-0.68985	-0.00034198	495.7298898828344	70.825	0.92208	70.825	70.237	71.159	0					30	17	3	0	0	0	0.69059	1	25692	25692		30.225	5.5509	1	2390600			36705	1487	26854	27073	35720	35720					-0.049719862415145144
NELYDHSL	8	Unmodified	_NELYDHSL_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	495.729989	989.445425	-0.40575	-0.00020114	-0.94583	-0.00046888	-1.3516	-0.00067002	495.7296660552068	70.111	0.76286	70.845	70.488	71.251	0.73421	0.010144	-0.000183	NaN	30.225	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2629000			36706	1487	26854	27073							-0.049719862415145144
NELYSVMKTY	10	Unmodified	_NELYSVMKTY_					0	0	0		nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;ENSG00000171943|ENST00000367123|SRGAP2C;ENSG00000266028|ENST00000573034|SRGAP2	nc|ENSG00000196369|P0DMP2|SRGAP2B	nc|ENSG00000196369|P0DMP2|SRGAP2B	MULTI-SECPEP	A375_MHC_IP_R1	1	623.7079467773438	2	624.302464	1246.59037	-0.47265	-0.00029508	-1.7706	-0.0011054	-2.2433	-0.0014005	624.8025756167422	70.673	0.25457	70.673	70.494	70.749	0					8	4	2	0	0	0	0.81654	1	25633	25633		20.581	9.0631	1	1267500			36707	7661	26855	27074	35721	35721					-0.023056861566828957
NEMKYYKAFRF	11	Unmodified	_NEMKYYKAFRF_					0	0	0			REV__ENSG00000109991|ENST00000263314|P2RX3	REV__ENSG00000109991|ENST00000263314|P2RX3	MSMS	A375_MHC_IP_R1	1	499.4454040527344	3	499.583345	1495.72821	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.558	1	31.558	31.058	32.058	0								0	0	0	0.16337	1	10112	10112		0.40827	0	1		+		36708	17606	26856	27075	35722	35722					0.00017062162555703253
NEMQPNGKVF	10	Oxidation (M)	_NEM(Oxidation (M))QPNGKVF_		NEM(1)QPNGKVF		NEM(160)QPNGKVF	0	0	1		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	A375_MHC_IP_R1	1	590.676025390625	2	590.27678	1178.53901	-0.66354	-0.00039167	-0.15875	-9.3704E-05	-0.82228	-0.00048538	590.2767391610923	29.973	0.60407	29.973	29.798	30.402	0					14	11	2	0	0	0	3.0522E-05	1	9483	9483		163.69	119.83	1	7124400			36709	1458	26857	27076	35723	35723		42			-0.04312010130752242
NEMQPNGKVF	10	Oxidation (M)	_NEM(Oxidation (M))QPNGKVF_		NEM(1)QPNGKVF		NEM(130)QPNGKVF	0	0	1		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	A375_MHC_IP_R2	2	590.6759033203125	2	590.27678	1178.53901	-1.359	-0.0008022	0.40448	0.00023875	-0.95454	-0.00056344	590.2768202062528	29.376	0.60444	30.074	29.83	30.434	0.69872					21	11	2	0	0	0	0.0068576	1	10221	10221		132.38	96.253	1	5689500			36710	1458	26857	27076	35724	35724		42			-0.04312010130752242
NEMQPNGKVF	10	Unmodified	_NEMQPNGKVF_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	A375_MHC_IP_R2	2	582.678955078125	2	582.279323	1162.54409	-0.6177	-0.00035967	0.38947	0.00022678	-0.22822	-0.00013289	582.2793060391504	41.197	0.35499	41.971	41.794	42.149	0.77451					16	6	4	0	0	0	0.0062475	1	15303	15303		103.42	74.933	1	5087500			36711	1458	26857	27077	35725	35725					-0.030677062681206735
NENDIITHF	9	Unmodified	_NENDIITHF_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-SECPEP	A375_MHC_IP_R1	1	552.1619262695312	2	551.76182	1101.50909	-0.73847	-0.00040746	0.5366	0.00029607	-0.20187	-0.00011138	551.7620784665966	66.383	1.1712	66.383	65.972	67.143	0					54	22	4	0	0	0	0.03109	1	23976	23976		92.653	57.721	1	36055000			36712	3067	26858	27078	35726	35726					-0.03760625804443407
NENDIITHF	9	Unmodified	_NENDIITHF_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-MSMS	A375_MHC_IP_R2	2	551.716796875	2	551.76182	1101.50909	-0.94792	-0.00052302	0.29247	0.00016138	-0.65544	-0.00036165	551.7619616906902	65.638	2.2373	66.376	65.817	68.054	0.73811					79	43	4	0	0	0	0.020264	1	24949	24949		100.09	44.588	1	36069000			36713	3067	26858	27078	35727	35727					-0.03760625804443407
NENHSGELW	9	Unmodified	_NENHSGELW_					0	0	0		nc|ENSG00000166333|Q13418-3|ILK;ENSG00000166333|ENST00000299421|ILK	nc|ENSG00000166333|Q13418-3|ILK	nc|ENSG00000166333|Q13418-3|ILK	MULTI-MSMS	A375_MHC_IP_R1	1	543.6357421875	2	543.23597	1084.45739	-0.41844	-0.00022731	-0.012922	-7.0196E-06	-0.43136	-0.00023433	543.235928721423	42.608	0.65672	42.608	42.336	42.993	0					23	12	3	0	0	0	0.2487	2	14799	14759;14799		34.402	13.133	1	3967100			36714	7059	26859	27079	35728;35729	35729					-0.08146369498331296
NENHSGELW	9	Unmodified	_NENHSGELW_					0	0	0		nc|ENSG00000166333|Q13418-3|ILK;ENSG00000166333|ENST00000299421|ILK	nc|ENSG00000166333|Q13418-3|ILK	nc|ENSG00000166333|Q13418-3|ILK	MULTI-MSMS	A375_MHC_IP_R2	2	543.1923828125	2	543.23597	1084.45739	-0.84434	-0.00045868	-0.095804	-5.2044E-05	-0.94015	-0.00051072	543.2359545807096	41.724	0.66372	42.499	42.249	42.913	0.77451					19	12	2	0	0	0	0.14858	1	15512	15512		41.956	17.282	1	3132600			36715	7059	26859	27079	35730	35730					-0.08146369498331296
NENLGTVKKEW	11	Unmodified	_NENLGTVKKEW_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-SECPEP	A375_MHC_IP_R1	1	440.29791259765625	3	439.898098	1316.67246	-0.085232	-3.7493E-05	-0.097116	-4.2721E-05	-0.18235	-8.0215E-05	439.89807218539966	33.522	0.40693	33.522	33.291	33.698	0					13	7	3	0	0	0	0.66194	1	10990	10990		31.446	20.381	1	2980200			36716	2362	26860	27080	35731	35731					0.026795522466272814
NENLGTVKKEW	11	Unmodified	_NENLGTVKKEW_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-SECPEP	A375_MHC_IP_R1	1	659.448486328125	2	659.343509	1316.67246	-0.46443	-0.00030622	-0.69204	-0.00045629	-1.1565	-0.00076251	659.3421076714814	33.522	0.2543	33.522	33.393	33.648	0					5	4	2	0	0	0	0.57164	1	10968	10968		43.477	23.062	1	1426100			36717	2362	26860	27080	35732	35732					0.026795522466272814
NENLGTVKKEW	11	Unmodified	_NENLGTVKKEW_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-SECPEP	A375_MHC_IP_R2	2	440.2980041503906	3	439.898098	1316.67246	-0.38351	-0.00016871	-0.090928	-3.9999E-05	-0.47444	-0.00020871	439.89809236536973	32.756	0.30336	33.493	33.317	33.62	0.73692					9	5	2	0	0	0	0.71083	1	11715	11715		28.271	14.1	1	4132000			36718	2362	26860	27080	35733	35733					0.026795522466272814
NENLRKYYKYY	11	Unmodified	_NENLRKYYKYY_					0	0	0		tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1	tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1	tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1	MSMS	A375_MHC_IP_R2	2	518.6583251953125	3	518.596419	1552.76743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.602	1	50.359	49.859	50.859	0.75737								0	0	0	0.16351	1	18640	18640		0.45452	0	1				36719	29916	26861	27081	35734	35734					0.013154857178051316
NENNGVLKKF	10	Unmodified	_NENNGVLKKF_					0	0	0		ENSG00000132716|ENST00000368074|DCAF8	ENSG00000132716|ENST00000368074|DCAF8	ENSG00000132716|ENST00000368074|DCAF8	MULTI-MSMS	A375_MHC_IP_R1	1	582.2144165039062	2	581.814387	1161.61422	-0.49452	-0.00028772	0.1007	5.859E-05	-0.39382	-0.00022913	581.8144175252936	28.975	0.4059	28.975	28.795	29.201	0					15	7	3	0	0	0	3.2662E-05	1	9031	9031		177.58	123.74	1	5192800			36720	4443	26862	27082	35735	35735					0.039879153919855526
NENNGVLKKF	10	Unmodified	_NENNGVLKKF_					0	0	0		ENSG00000132716|ENST00000368074|DCAF8	ENSG00000132716|ENST00000368074|DCAF8	ENSG00000132716|ENST00000368074|DCAF8	MULTI-SECPEP	A375_MHC_IP_R1	1	388.6120300292969	3	388.212017	1161.61422	-0.062577	-2.4293E-05	0.15516	6.0237E-05	0.092588	3.5944E-05	388.2120292743724	29.022	0.60896	29.022	28.643	29.252	0					31	11	4	0	0	0	0.15002	1	9007	9007		57.108	23.663	1	40940000			36721	4443	26862	27082	35736	35736					0.039879153919855526
NENNGVLKKF	10	Unmodified	_NENNGVLKKF_					0	0	0		ENSG00000132716|ENST00000368074|DCAF8	ENSG00000132716|ENST00000368074|DCAF8	ENSG00000132716|ENST00000368074|DCAF8	MULTI-MSMS	A375_MHC_IP_R2	2	388.61175537109375	3	388.212017	1161.61422	-0.44295	-0.00017196	0.24575	9.5403E-05	-0.1972	-7.6557E-05	388.21208718323965	28.25	0.55836	28.929	28.655	29.214	0.67857					26	10	3	0	0	0	0.086961	1	9713	9713		57.108	31.087	1	34517000			36722	4443	26862	27082	35737	35737					0.039879153919855526
NENNGVLKKF	10	Unmodified	_NENNGVLKKF_					0	0	0		ENSG00000132716|ENST00000368074|DCAF8	ENSG00000132716|ENST00000368074|DCAF8	ENSG00000132716|ENST00000368074|DCAF8	MULTI-MSMS	A375_MHC_IP_R2	2	582.2138061523438	2	581.814387	1161.61422	-0.64042	-0.0003726	-0.20988	-0.00012211	-0.8503	-0.00049472	581.8141231199141	28.255	0.40562	28.934	28.706	29.112	0.67857					12	7	2	0	0	0	2.4652E-05	1	9747	9747		154.04	106.44	1	5254400			36723	4443	26862	27082	35738	35738					0.039879153919855526
NENPLRALY	9	Unmodified	_NENPLRALY_					0	0	0		ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;ENSG00000077264|ENST00000372007|PAK3;nc|ENSG00000077264|O75914|PAK3;nc|ENSG00000077264|O75914-4|PAK3;nc|ENSG00000077264|O75914-3|PAK3;ENSG00000180370|ENST00000327134|PAK2	ENSG00000149269|ENST00000356341|PAK1	ENSG00000149269|ENST00000356341|PAK1	MULTI-MSMS	A375_MHC_IP_R1	1	545.687744140625	2	545.288005	1088.56146	-0.23405	-0.00012763	-0.50193	-0.0002737	-0.73599	-0.00040132	545.2880441228077	70.012	1.3723	70.012	69.427	70.8	0					79	26	5	0	0	0	0.0028938	1	25339	25339		157.8	102.29	1	21869000			36724	5795	26863	27083	35739	35739					0.020719573291898996
NENPLRALY	9	Unmodified	_NENPLRALY_					0	0	0		ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;ENSG00000077264|ENST00000372007|PAK3;nc|ENSG00000077264|O75914|PAK3;nc|ENSG00000077264|O75914-4|PAK3;nc|ENSG00000077264|O75914-3|PAK3;ENSG00000180370|ENST00000327134|PAK2	ENSG00000149269|ENST00000356341|PAK1	ENSG00000149269|ENST00000356341|PAK1	MULTI-MSMS	A375_MHC_IP_R2	2	545.6876220703125	2	545.288005	1088.56146	-0.70261	-0.00038312	-0.34881	-0.0001902	-1.0514	-0.00057332	545.287934349099	69.195	1.2678	69.93	69.221	70.489	0.73511					64	24	4	0	0	0	0.0098926	2	26133	26133;26167		118.07	74.21	1	19988000			36725	5795	26863	27083	35740;35741	35740					0.020719573291898996
NENPNVLEW	9	Unmodified	_NENPNVLEW_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.L2956*|1|0.6|ENSG00000151835|chr13:23335009-23335009|A/-|frameshift_variant;SACS|p.P3025Hfs*21|1|0.32|ENSG00000151835|chr13:23334784-23334802|AGTAAATTGTCAAAAAATG/-|frameshift_variant	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	A375_MHC_IP_R1	1	558.161865234375	2	557.76182	1113.50909	-0.42586	-0.00023753	0.82951	0.00046267	0.40365	0.00022514	557.7621451431369	97.01	0.55736	97.01	96.63	97.187	0					24	10	4	0	0	0	0.032333	1	35633	35633		72.968	40.182	1	1510500			36726	5930	26864	27084	35742	35742					-0.043126258044367205
NENPNVLEW	9	Unmodified	_NENPNVLEW_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.L2956*|1|0.6|ENSG00000151835|chr13:23335009-23335009|A/-|frameshift_variant;SACS|p.P3025Hfs*21|1|0.32|ENSG00000151835|chr13:23334784-23334802|AGTAAATTGTCAAAAAATG/-|frameshift_variant	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	A375_MHC_IP_R2	2	558.1616821289062	2	557.76182	1113.50909	-0.75056	-0.00041864	0.61033	0.00034042	-0.14023	-7.8216E-05	557.7621065266653	96.232	0.71112	96.982	96.602	97.313	0.75045					21	13	2	0	0	0	0.18869	1	36535	36535		51.415	26.741	1	1781900			36727	5930	26864	27084	35743	35743					-0.043126258044367205
NENPSKDQGW	10	Unmodified	_NENPSKDQGW_					0	0	0		ENSG00000100354|ENST00000454349|TNRC6B;nc|ENSG00000100354|Q9UPQ9-1|TNRC6B;TNRC6B|p.G733E|1|0.36|ENSG00000100354|chr22:40266428-40266428|G/A|missense_variant	ENSG00000100354|ENST00000454349|TNRC6B	ENSG00000100354|ENST00000454349|TNRC6B	MULTI-MSMS	A375_MHC_IP_R1	1	588.1595458984375	2	587.759809	1173.50507	-0.29893	-0.0001757	-0.21155	-0.00012434	-0.51048	-0.00030004	587.7596451257067	25.332	0.40892	25.332	25.204	25.613	0					14	7	2	0	0	0	0.21482	1	7418	7418		47.732	17.891	1	3642300			36728	2167	26865	27085	35744	35744					-0.07474715298144474
NENPSKDQGW	10	Unmodified	_NENPSKDQGW_					0	0	0		ENSG00000100354|ENST00000454349|TNRC6B;nc|ENSG00000100354|Q9UPQ9-1|TNRC6B;TNRC6B|p.G733E|1|0.36|ENSG00000100354|chr22:40266428-40266428|G/A|missense_variant	ENSG00000100354|ENST00000454349|TNRC6B	ENSG00000100354|ENST00000454349|TNRC6B	MULTI-MATCH	A375_MHC_IP_R2	2		2	587.759809	1173.50507	-0.96846	-0.00056922	-0.049776	-2.9256E-05	-1.0182	-0.00059848	588.2611561841446	24.846	0.25451	25.49	25.364	25.619	0.64368	0.078718	9.8819E-05	NaN	47.732	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3559700			36729	2167	26865	27085							-0.07474715298144474
NENSFEKQV	9	Unmodified	_NENSFEKQV_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;SCAF11|p.N670Kfs*2|1|0.23|ENSG00000139218|chr12:45927691-45927692|-/T|frameshift_variant	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-SECPEP	A375_MHC_IP_R1	1	547.1743774414062	2	547.759278	1093.504	-0.73494	-0.00040257	-1.6786	-0.00091945	-2.4135	-0.001322	547.7584916533835	26.976	0.3503	26.976	26.828	27.179	0					9	6	2	0	0	0	0.57304	1	8098	8098		13.615	0	1	2375200			36730	5060	26866	27086	35745	35745					-0.03900929667042874
NENSLFKSL	9	Unmodified	_NENSLFKSL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	A375_MHC_IP_R1	1	526.6924438476562	2	526.274564	1050.53457	-0.61195	-0.00032206	0.041051	2.1604E-05	-0.5709	-0.00030045	526.2746600244378	68.486	1.7743	68.486	68.108	69.882	0					88	34	4	0	0	0	4.7783E-11	3	24809	24764;24809;25233		230.41	130.65	1	46136000			36731	5230	26867	27087	35746;35747;35748	35747					0.011328487180207958
NENSNIQVL	9	Unmodified	_NENSNIQVL_					0	0	0		nc|ENSG00000145216|Q6UN15-4|FIP1L1;nc|ENSG00000145216|Q6UN15-5|FIP1L1;ENSG00000145216|ENST00000337488|FIP1L1;ENST00000513975.5_1_4:54244032-54306933:+|nuORF;ENST00000505125.5_1_4:54245288-54325613:+|nuORF;ENST00000513008.5_1_4:54292015-54325613:+|nuORF;nc|ENSG00000145216|Q6UN15-3|FIP1L1	nc|ENSG00000145216|Q6UN15-4|FIP1L1	nc|ENSG00000145216|Q6UN15-4|FIP1L1	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1614990234375	2	515.76182	1029.50909	-0.56904	-0.00029349	-0.01998	-1.0305E-05	-0.58902	-0.00030379	515.7617488197634	61.392	0.7644	61.392	60.973	61.737	0					24	14	2	0	0	0	0.011405	1	22083	22083		122.18	51.046	1	5668500			36732	5541	26868	27088	35749	35749					-0.00448625804438052
NENSNIQVL	9	Unmodified	_NENSNIQVL_					0	0	0		nc|ENSG00000145216|Q6UN15-4|FIP1L1;nc|ENSG00000145216|Q6UN15-5|FIP1L1;ENSG00000145216|ENST00000337488|FIP1L1;ENST00000513975.5_1_4:54244032-54306933:+|nuORF;ENST00000505125.5_1_4:54245288-54325613:+|nuORF;ENST00000513008.5_1_4:54292015-54325613:+|nuORF;nc|ENSG00000145216|Q6UN15-3|FIP1L1	nc|ENSG00000145216|Q6UN15-4|FIP1L1	nc|ENSG00000145216|Q6UN15-4|FIP1L1	MULTI-SECPEP	A375_MHC_IP_R2	2	515.1900024414062	2	515.76182	1029.50909	-1.0599	-0.00054666	0.21085	0.00010875	-0.84906	-0.00043791	515.7618938862024	60.544	0.66227	61.289	61.006	61.668	0.74503					28	12	3	0	0	0	0.011451	1	22931	22931		107.19	29.038	1	6619100			36733	5541	26868	27088	35750	35750					-0.00448625804438052
NENYYEMKHSV	11	Unmodified	_NENYYEMKHSV_					0	0	0			REV__tr|U7SSF2|U7SSF2_FUSNUHollidayjunctionbranchmigrationcomplexsubunitRuvBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ruvBPE=3SV=1	REV__tr|U7SSF2|U7SSF2_FUSNUHollidayjunctionbranchmigrationcomplexsubunitRuvBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ruvBPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	472.16595458984375	3	471.874965	1412.60306	-0.99736	-0.00047063	-0.0093397	-4.4072E-06	-1.0067	-0.00047504	471.87489445990155	26.142	0.3556	26.802	26.602	26.957	0.65992					11	6	2	0	0	0	0.73283	1	8757	8757		2.8433	0	1	2991500	+		36734	28426	26869	27089	35751	35751					-0.08673274764464622
NEPCNWREW	9	Unmodified	_NEPCNWREW_					0	0	0			REV__nc|ENSG00000061492|Q9H1J5|WNT8A	REV__nc|ENSG00000061492|Q9H1J5|WNT8A	MULTI-MSMS	A375_MHC_IP_R2	2	617.224365234375	2	617.258922	1232.50329	-0.58852	-0.00036327	-0.8754	-0.00054035	-1.4639	-0.00090361	617.2587565816892	63.883	0.5068	64.623	64.344	64.85	0.74022					20	9	3	0	0	0	0.72985	1	24144	24144		4.3292	0.38484	1	4788200	+		36735	16449	26870	27090	35752	35752					-0.10366047587740468
NEPDLGILY	9	Unmodified	_NEPDLGILY_					0	0	0			REV__ENSG00000005469|ENST00000331536|CROT	REV__ENSG00000005469|ENST00000331536|CROT	MULTI-MSMS	A375_MHC_IP_R1	1	1033.578125	1	1033.52005	1032.51278	0.28838	0.00029805	0.2331	0.00024091	0.52148	0.00053896	1033.5192752725752	105.57	1.5294	105.57	105.25	106.78	0					59	29	3	0	0	0	0.51106	1	39138	39138		19.257	0	1	18827000	+		36736	16122	26871	27091	35753	35753					-0.0021795603054215462
NEPILYGRSY	10	Unmodified	_NEPILYGRSY_					0	0	0		ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B;ENSG00000243811|ENST00000216099|APOBEC3D	ENSG00000179750|ENST00000333467|APOBEC3B;ENSG00000243811|ENST00000216099|APOBEC3D	ENSG00000179750|ENST00000333467|APOBEC3B	MULTI-SECPEP	A375_MHC_IP_R1	1	606.7069702148438	2	606.306395	1210.59824	-0.34342	-0.00020822	0.20697	0.00012549	-0.13645	-8.2733E-05	606.3064682066553	52.361	1.0683	52.361	51.778	52.847	0					36	20	3	0	0	0	0.38298	1	18582	18582		51.765	51.765	1	23222000			36737	8248;9815	26872	27092	35754	35754					0.0013620915508454345
NEPILYGRSY	10	Unmodified	_NEPILYGRSY_					0	0	0		ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B;ENSG00000243811|ENST00000216099|APOBEC3D	ENSG00000179750|ENST00000333467|APOBEC3B;ENSG00000243811|ENST00000216099|APOBEC3D	ENSG00000179750|ENST00000333467|APOBEC3B	MULTI-SECPEP	A375_MHC_IP_R2	2	605.956787109375	2	606.306395	1210.59824	-0.66766	-0.0004048	0.21523	0.0001305	-0.45242	-0.00027431	606.3064167204365	51.696	0.7636	52.448	52.169	52.932	0.75225					36	14	3	0	0	0	0.7212	1	19386	19386		28.234	20.323	1	19539000			36738	8248;9815	26872	27092	35755	35755					0.0013620915508454345
NEPKANYEQ	9	Unmodified	_NEPKANYEQ_					0	0	0		ENSG00000143850|ENST00000272203|PLEKHA6	ENSG00000143850|ENST00000272203|PLEKHA6	ENSG00000143850|ENST00000272203|PLEKHA6	MULTI-SECPEP	A375_MHC_IP_R1	1	546.1651611328125	2	546.751453	1091.48835	-0.28135	-0.00015383	1.4259	0.0007796	1.1445	0.00062577	546.7521952344391	108.06	0.30344	108.06	107.95	108.26	0					9	5	2	0	0	0	0.69381	1	39680	39680		10.8	7.203	1	995500			36739	5442	26873	27093	35756	35756					-0.05373216184102603
NEPPESEDD	9	Unmodified	_NEPPESEDD_					0	0	0			REV__ENSG00000137310|ENST00000376257|TCF19	REV__ENSG00000137310|ENST00000376257|TCF19	MSMS	A375_MHC_IP_R1	1	516.1614990234375	2	516.193633	1030.37271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.274	1	61.274	60.774	61.774	0								0	0	0	0.14767	1	22083	22083		25.399	3.6527	1		+		36740	18998	26874	27094	35757	35757					-0.14125784825591836
NEPPYHHRYRI	11	Unmodified	_NEPPYHHRYRI_					0	0	0			REV__nc|ENSG00000167632|Q96Q05-3|TRAPPC9	REV__nc|ENSG00000167632|Q96Q05-3|TRAPPC9	MSMS	A375_MHC_IP_R2	2	494.6511535644531	3	494.584736	1480.73238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.428	1	25.072	24.572	25.572	0.64368								0	0	0	0.16302	1	8019	8019		1.2148	0	1		+		36741	20778	26875	27095	35758	35758					0.011242877005088303
NEQDLGIQY	9	Unmodified	_NEQDLGIQY_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-SECPEP	A375_MHC_IP_R1	1	540.6533203125	2	540.253828	1078.4931	-0.65698	-0.00035493	0.51152	0.00027635	-0.14545	-7.8582E-05	540.2541330257752	68.705	0.86175	68.705	68.26	69.121	0					37	16	3	0	0	0	0.036758	1	24875	24875		99.755	43.578	1	11920000			36742	1184	26876	27096	35759	35759					-0.04300332041339061
NEQDLGIQY	9	Unmodified	_NEQDLGIQY_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	540.253828	1078.4931	-0.74415	-0.00040203	-0.030572	-1.6517E-05	-0.77472	-0.00041854	540.2539647830968	68.153	1.2683	68.888	68.307	69.575	0.73511	0.091284	-0.00031572	NaN	99.755	47	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10556000			36743	1184	26876	27096							-0.04300332041339061
NEQFIRGHF	9	Unmodified	_NEQFIRGHF_					0	0	0			REV__KIR3DL2|p.S79N|1|0.4|ENSG00000240403|chr19:54852163-54852163|G/A|missense_variant	REV__KIR3DL2|p.S79N|1|0.4|ENSG00000240403|chr19:54852163-54852163|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	383.5708312988281	3	383.192957	1146.55704	0.042601	1.6324E-05	-0.080607	-3.0888E-05	-0.038006	-1.4564E-05	383.1930056399305	43.341	0.35572	44.113	43.977	44.333	0.7724					15	6	3	0	0	0	0.77834	1	16179	16179		2.7352	0	1	1845200	+		36744	26852	26877	27097	35760	35760					-0.010375070937243436
NEQSAPLPVP	10	Unmodified	_NEQSAPLPVP_					0	0	0		nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0-4|DOCK4;ENST00000486186.1_7:111368332-111379399:-|nuORF	nc|ENSG00000128512|Q8N1I0|DOCK4	nc|ENSG00000128512|Q8N1I0|DOCK4	MULTI-MSMS	A375_MHC_IP_R1	1	527.714111328125	2	526.274564	1050.53457	-0.61195	-0.00032206	0.041051	2.1604E-05	-0.5709	-0.00030045	526.2746600244378	68.486	1.7743	68.486	68.108	69.882	0					88	34	4	0	0	0	0.66712	1	24989	24989		15.847	1.0089	1	46136000			36745	4139	26878	27098	35761	35761					0.011328487179980584
NEQTLQRSW	9	Unmodified	_NEQTLQRSW_					0	0	0		nc|ENSG00000127952|Q9Y6J8-4|STYXL1;ENSG00000127952|ENST00000359697|STYXL1	nc|ENSG00000127952|Q9Y6J8-4|STYXL1	nc|ENSG00000127952|Q9Y6J8-4|STYXL1	MULTI-SECPEP	A375_MHC_IP_R1	1	581.685546875	2	581.285994	1160.55744	-0.47719	-0.00027738	-0.31021	-0.00018032	-0.7874	-0.0004577	581.2855539602303	36.764	0.70672	36.764	36.339	37.045	0					22	13	2	0	0	0	0.35788	1	12334	12334		61.09	61.09	1	3226200			36746	4113	26879	27099	35762	35762					-0.01642132164533905
NEQYKAHFWPR	11	Unmodified	_NEQYKAHFWPR_					0	0	0		nc|ENSG00000167123|Q5T4B2-2|CERCAM;ENSG00000167123|ENST00000372838|CERCAM	nc|ENSG00000167123|Q5T4B2-2|CERCAM	nc|ENSG00000167123|Q5T4B2-2|CERCAM	MSMS	A375_MHC_IP_R1	1	492.477294921875	3	492.57747	1474.71058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.814	1	45.814	45.314	46.314	0								0	0	0	0.16249	1	16048	16048		2.6312	0	1				36747	7160	26880	27100	35763	35763					-0.007785170480929082
NEQYKAHFWPR	11	Unmodified	_NEQYKAHFWPR_					0	0	0		nc|ENSG00000167123|Q5T4B2-2|CERCAM;ENSG00000167123|ENST00000372838|CERCAM	nc|ENSG00000167123|Q5T4B2-2|CERCAM	nc|ENSG00000167123|Q5T4B2-2|CERCAM	MSMS	A375_MHC_IP_R2	2	492.47723388671875	3	492.57747	1474.71058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.107	1	45.876	45.376	46.376	0.76907								0	0	0	0.16249	1	16855	16855		2.6312	0	1				36748	7160	26880	27100	35764	35764					-0.007785170480929082
NERDGVTYSY	10	Unmodified	_NERDGVTYSY_					0	0	0		ENSG00000111897|ENST00000339697|SERINC1	ENSG00000111897|ENST00000339697|SERINC1	ENSG00000111897|ENST00000339697|SERINC1	MULTI-MSMS	A375_MHC_IP_R1	1	602.6669921875	2	602.267467	1202.52038	-0.60746	-0.00036585	0.15834	9.5363E-05	-0.44912	-0.00027049	602.2675228763405	32.74	0.2518	32.74	32.585	32.836	0					13	4	4	0	0	0	0.28986	1	10603	10603		40.725	4.6807	1	9352900			36749	3039	26881	27101	35765	35765					-0.07277848500962136
NERDGVTYSY	10	Unmodified	_NERDGVTYSY_					0	0	0		ENSG00000111897|ENST00000339697|SERINC1	ENSG00000111897|ENST00000339697|SERINC1	ENSG00000111897|ENST00000339697|SERINC1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	602.267467	1202.52038	-0.60746	-0.00036585	0.15834	9.5363E-05	-0.44912	-0.00027049	602.2675228763405	32.74	0.2518	32.74	32.585	32.836	0	-0.043472	-6.8622E-05	NaN	40.725	13	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9352900			36750	3039	26881	27101							-0.07277848500962136
NERDGVTYSY	10	Unmodified	_NERDGVTYSY_					0	0	0		ENSG00000111897|ENST00000339697|SERINC1	ENSG00000111897|ENST00000339697|SERINC1	ENSG00000111897|ENST00000339697|SERINC1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	602.267467	1202.52038	-0.49151	-0.00029602	0.28527	0.00017181	-0.20624	-0.00012421	602.2677085838964	32.09	0.40578	32.827	32.605	33.01	0.73692	0.043472	8.4276E-05	NaN	40.725	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7197500			36751	3039	26881	27101							-0.07277848500962136
NERELISHL	9	Unmodified	_NERELISHL_					0	0	0		ENSG00000121864|ENST00000496856|ZNF639;ZNF639|p.P480S|1|0.32|ENSG00000121864|chr3:179334402-179334402|C/T|missense_variant	ENSG00000121864|ENST00000496856|ZNF639	ENSG00000121864|ENST00000496856|ZNF639	MULTI-SECPEP	A375_MHC_IP_R2	2	556.1682739257812	2	555.798737	1109.58292	-1.2573	-0.00069879	0.57313	0.00031854	-0.68414	-0.00038025	555.7989315213649	29.702	0.55381	30.401	30.185	30.739	0.69872					23	10	3	0	0	0	0.36673	1	10388	10388		58.679	5.2748	1	4263400			36752	3742	26882	27102	35766	35766					0.03251342357907561
NERLFEHCL	9	Unmodified	_NERLFEHCL_					0	0	0			REV__CPXM1|p.G384E|1|0.2|ENSG00000088882|chr20:2796338-2796338|C/T|missense_variant	REV__CPXM1|p.G384E|1|0.2|ENSG00000088882|chr20:2796338-2796338|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	387.4454345703125	3	387.522086	1159.54443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.42	1	41.195	40.695	41.695	0.77451								0	0	0	0.15486	1	14967	14967		3.5871	0.5148	1		+		36753	15911	26883	27103	35767	35767					-0.028962865482526468
NERLWTLVGH	10	Unmodified	_NERLWTLVGH_					0	0	0			REV__ENSG00000011590|ENST00000392197|ZBTB32	REV__ENSG00000011590|ENST00000392197|ZBTB32	MULTI-MSMS	A375_MHC_IP_R2	2	409.28704833984375	3	408.887645	1223.64111	-0.027966	-1.1435E-05	-1.4202	-0.00058069	-1.4481	-0.00059212	409.2213934561509	32.477	0.40699	33.214	33.01	33.417	0.73691					12	7	2	0	0	0	0.70972	1	11591	11591		7.9454	0.099354	1	2810600	+		36754	16216	26884	27104	35768	35768					0.038230240031680296
NERQAQLL	8	Unmodified	_NERQAQLL_					0	0	0			REV__nc|ENSG00000159899|P20594-2|NPR2	REV__nc|ENSG00000159899|P20594-2|NPR2	MULTI-SECPEP	A375_MHC_IP_R2	2	486.19940185546875	2	486.267073	970.519593	-0.50732	-0.00024669	0.10951	5.3253E-05	-0.3978	-0.00019344	486.26713178088204	69.272	0.50561	70.006	69.829	70.335	0.73421					15	9	2	0	0	0	0.90224	1	26341	26341		26.341	13.81	1	2341900	+		36755	20139	26885	27105	35769	35769					0.03315401640657001
NERRSDIKIVP	11	Unmodified	_NERRSDIKIVP_					0	0	0			REV__ENST00000496760.5_1_9:37899897-37904071:-|nuORF	REV__ENST00000496760.5_1_9:37899897-37904071:-|nuORF	MSMS	A375_MHC_IP_R2	2	663.8399658203125	2	663.87805	1325.74155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.21	1	102.97	102.47	103.47	0.76428								0	0	0	0.16302	1	38731	38731		2.9952	0.26005	1		+		36756	25462	26886	27106	35770	35770					0.09170636266162546
NERVFDWAL	9	Unmodified	_NERVFDWAL_					0	0	0			REV__nc|ENSG00000164308|Q6P179-3|ERAP2	REV__nc|ENSG00000164308|Q6P179-3|ERAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	574.8092651367188	2	575.288005	1148.56146	-0.17576	-0.00010112	2.5681	0.0014774	2.3923	0.0013763	575.7888363166013	83.078	1.0124	83.078	82.622	83.634	0					24	19	2	0	0	0	0.75164	1	30378	30378		1.1933	0	1	2610100	+		36757	20480	26887	27107	35771	35771					-0.006880426707994047
NERVFSLQW	9	Unmodified	_NERVFSLQW_					0	0	0		ENSG00000205403|ENST00000394634|CFI	ENSG00000205403|ENST00000394634|CFI	ENSG00000205403|ENST00000394634|CFI	MULTI-SECPEP	A375_MHC_IP_R1	1	393.2684631347656	3	393.536612	1177.58801	0.22618	8.9012E-05	1.0626	0.00041815	1.2887	0.00050717	393.53703254623355	35.451	0.45844	35.451	35.167	35.625	0					13	8	2	0	0	0	0.775	1	11739	11739		10.8	5.0161	1	1512800			36758	9512	26888	27108	35772	35772					0.006316462205177231
NERVSLHHQY	10	Unmodified	_NERVSLHHQY_					0	0	0			REV__ENSG00000128973|ENST00000249806|CLN6	REV__ENSG00000128973|ENST00000249806|CLN6	MULTI-MSMS	A375_MHC_IP_R1	1	641.7147216796875	2	641.817993	1281.62143	-0.46219	-0.00029664	2.5238	0.0016198	2.0616	0.0013232	642.3218083993659	56	0.76262	56	55.584	56.347	0					45	14	4	0	0	0	0.70972	1	20059	20059		8.7454	1.4562	1	5273300	+		36759	18477	26889	27109	35773	35773					-0.008113520075767156
NESAIFHGW	9	Unmodified	_NESAIFHGW_					0	0	0		ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	MULTI-MSMS	A375_MHC_IP_R1	1	531.2344970703125	2	530.745973	1059.47739	-0.65753	-0.00034898	-0.44799	-0.00023777	-1.1055	-0.00058675	530.745531835709	76.44	1.0656	76.44	75.966	77.032	0					45	20	3	0	0	0	0.0091485	3	27902	27864;27902;28024		101.72	63.571	1	10481000			36760	9564	26890	27110	35774;35775;35776	35775					-0.04996573767721202
NESAIFHGW	9	Unmodified	_NESAIFHGW_					0	0	0		ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	MULTI-MSMS	A375_MHC_IP_R2	2	531.1453247070312	2	530.745973	1059.47739	-0.63189	-0.00033537	-0.95769	-0.00050829	-1.5896	-0.00084366	530.745206631841	75.663	0.91595	76.403	76.078	76.994	0.74052					53	17	4	0	0	0	0.0091485	2	28689	28689;28828		101.72	41.332	1	10317000			36761	9564	26890	27110	35777;35778	35777					-0.04996573767721202
NESAWKMLDP	10	Unmodified	_NESAWKMLDP_					0	0	0			REV__nc|ENSG00000183576|Q86TU7-3|SETD3	REV__nc|ENSG00000183576|Q86TU7-3|SETD3	MULTI-SECPEP	A375_MHC_IP_R1	1	397.2801818847656	3	397.521863	1189.54376	0.25852	0.00010277	2.954	0.0011743	3.2125	0.001277	397.5232540049237	22.546	0.60645	22.546	22.368	22.974	0					16	11	2	0	0	0	0.91556	1	6155	6155		5.7834	0.38072	1	2492100	+		36762	21764	26891	27111	35779	35779					-0.04343125987975327
NESDMIRNW	9	Unmodified	_NESDMIRNW_					0	0	0		ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-MSMS	A375_MHC_IP_R1	1	582.6953735351562	2	582.758755	1163.50296	-0.20565	-0.00011984	0.30354	0.00017689	0.097889	5.7046E-05	582.758572886088	59.702	0.71052	59.702	59.245	59.955	0					31	13	3	0	0	0	0.0096822	2	21452	21440;21452		114.19	74.229	1	4158100			36763	3392	26892	27112	35780;35781	35781					-0.0722546730760314
NESDMIRNW	9	Unmodified	_NESDMIRNW_					0	0	0		ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-MSMS	A375_MHC_IP_R2	2	583.1578979492188	2	582.758755	1163.50296	-0.77468	-0.00045145	0.64675	0.0003769	-0.12793	-7.455E-05	582.758711520384	58.909	0.60948	59.657	59.387	59.996	0.74714					23	11	3	0	0	0	0.010044	2	22287	22218;22287		125.04	83.082	1	6050000			36764	3392	26892	27112	35782;35783	35783					-0.0722546730760314
NESDMIRNW	9	Oxidation (M)	_NESDM(Oxidation (M))IRNW_		NESDM(1)IRNW		NESDM(85)IRNW	0	0	1		ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-SECPEP	A375_MHC_IP_R1	1	591.1561889648438	2	590.756212	1179.49787	-0.26983	-0.00015941	-0.37277	-0.00022022	-0.6426	-0.00037962	590.7560354099032	40.737	0.65689	40.737	40.406	41.063	0					28	12	3	0	0	0	0.035151	1	13988	13988		84.522	51.737	1	6438800			36765	3392	26892	27113	35784	35784		167			-0.0846977117021197
NESDMIRNW	9	Oxidation (M)	_NESDM(Oxidation (M))IRNW_		NESDM(1)IRNW		NESDM(94)IRNW	0	0	1		ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-SECPEP	A375_MHC_IP_R2	2	591.15576171875	2	590.756212	1179.49787	-0.61513	-0.00036339	-0.36158	-0.00021361	-0.97672	-0.000577	590.7560212267429	39.994	0.6091	40.769	40.473	41.082	0.77451					22	11	3	0	0	0	0.011418	1	14795	14795		93.938	61.152	1	4966800			36766	3392	26892	27113	35785	35785		167			-0.0846977117021197
NESEEVRQF	9	Unmodified	_NESEEVRQF_					0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	MULTI-MSMS	A375_MHC_IP_R1	1	570.1634521484375	2	569.262185	1136.50982	-0.65759	-0.00037434	0.14635	8.331E-05	-0.51124	-0.00029103	569.2621770981643	30.175	0.65478	30.175	29.949	30.603	0					32	12	4	0	0	0	0.010852	1	9535	9535		179.17	116.6	1	40928000			36767	4032	26893	27114	35786	35786					-0.052978311553715685
NESEEVRQF	9	Unmodified	_NESEEVRQF_					0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	MULTI-SECPEP	A375_MHC_IP_R2	2	569.6617431640625	2	569.262185	1136.50982	-0.9789	-0.00055725	0.33582	0.00019117	-0.64308	-0.00036608	569.2623758901984	29.523	0.70788	30.222	29.93	30.638	0.69872					37	13	4	0	0	0	6.1184E-09	1	10292	10292		214.05	129.53	1	29142000			36768	4032	26893	27114	35787	35787					-0.052978311553715685
NESEPIVVY	9	Unmodified	_NESEPIVVY_					0	0	0		ENST00000526194.5_1_1:21560049-21616919:-|nuORF;nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-2|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	525.6605834960938	2	525.261122	1048.50769	-0.51165	-0.00026875	-0.96082	-0.00050468	-1.4725	-0.00077343	525.2609389884393	75.336	1.2686	76.077	75.674	76.943	0.74052					45	24	4	0	0	0	0.016309	1	28570	28570		114.65	43.515	1	10776000			36769	3470	26894	27115	35788	35788					-0.01462259893173723
NESERHNDL	9	Unmodified	_NESERHNDL_					0	0	0			REV__ENSG00000103319|ENST00000263026|EEF2K	REV__ENSG00000103319|ENST00000263026|EEF2K	MULTI-MSMS	A375_MHC_IP_R1	1	557.6526489257812	2	557.249609	1112.48466	-0.67884	-0.00037829	1.9666	0.0010959	1.2877	0.00071758	557.250502999958	32.982	0.4557	32.982	32.734	33.19	0					14	8	2	0	0	0	0.55471	1	10746	10746		17.113	2.2746	1	2697000	+		36770	17270	26895	27116	35789	35789					-0.06707885957939652
NESERHNDL	9	Unmodified	_NESERHNDL_					0	0	0			REV__ENSG00000103319|ENST00000263026|EEF2K	REV__ENSG00000103319|ENST00000263026|EEF2K	MULTI-MATCH	A375_MHC_IP_R2	2		2	557.249609	1112.48466	-0.79174	-0.0004412	1.39	0.00077457	0.59824	0.00033337	557.2514675762098	32.354	0.40807	33.091	32.857	33.265	0.73692	0.05465	-0.00027508	NaN	17.113	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3313500	+		36771	17270	26895	27116							-0.06707885957939652
NESEYTVKW	9	Unmodified	_NESEYTVKW_					0	0	0		ENSG00000151694|ENST00000310823|ADAM17;nc|ENSG00000151694|P78536-2|ADAM17;ENST00000478059.1_1_2:9667906-9695734:-|nuORF	ENSG00000151694|ENST00000310823|ADAM17	ENSG00000151694|ENST00000310823|ADAM17	MULTI-MSMS	A375_MHC_IP_R2	2	578.669921875	2	578.269478	1154.5244	-0.378	-0.00021859	1.8221	0.0010537	1.4441	0.00083507	578.2698052522383	54.795	1.018	55.546	55.169	56.187	0.75075					56	19	5	0	0	0	0.0089117	1	20679	20679		97.741	64.955	1	13748000			36772	5922	26896	27117	35790	35790					-0.046677590072249586
NESGGAQYNE	10	Unmodified	_NESGGAQYNE_					0	0	0			REV__ENSG00000153498|ENST00000283550|SPACA7	REV__ENSG00000153498|ENST00000283550|SPACA7	MULTI-SECPEP	A375_MHC_IP_R1	1	534.1559448242188	2	534.715067	1067.41558	-0.90006	-0.00048128	-0.33519	-0.00017923	-1.2353	-0.00066051	534.7148392305685	66.658	0.56046	66.658	66.326	66.887	0					15	10	2	0	0	0	0.79457	1	24165	24165		20.415	7.883	1	1448200	+		36773	19842	26897	27118	35791	35791					-0.11542969977517714
NESGKAFNY	9	Unmodified	_NESGKAFNY_					0	0	0		ENSG00000198346|ENST00000396403|ZNF813;ENSG00000160336|ENST00000684525|ZNF761;ENSG00000213799|ENST00000458035|ZNF845	ENSG00000198346|ENST00000396403|ZNF813	ENSG00000198346|ENST00000396403|ZNF813	MULTI-MSMS	A375_MHC_IP_R1	1	515.6350708007812	2	515.235439	1028.45632	-0.99871	-0.00051457	0.1395	7.1874E-05	-0.85921	-0.0004427	515.2355062309745	29.289	0.30504	29.289	29.098	29.403	0					11	5	3	0	0	0	0.094655	1	9155	9155		51.63	19.324	1	4806400			36774	6419	26898	27119	35792	35792					-0.0567658386723906
NESHVFSLGAE	11	Unmodified	_NESHVFSLGAE_					0	0	0			REV__ENSG00000069020|ENST00000403625|MAST4;REV__nc|ENSG00000069020|O15021-6|MAST4	REV__nc|ENSG00000069020|O15021-6|MAST4	MULTI-SECPEP	A375_MHC_IP_R2	2	594.666015625	2	595.277835	1188.54112	-0.82228	-0.00048949	0.017329	1.0315E-05	-0.80496	-0.00047917	595.277748536539	41.027	0.65878	41.801	41.54	42.198	0.77451					38	12	4	0	0	0	0.94168	1	15117	15117		15.248	15.248	1	32360000	+		36775	16552;27113	26899	27120	35793	35793					-0.04561258121270839
NESILKGGEW	10	Unmodified	_NESILKGGEW_					0	0	0			REV__ENSG00000075089|ENST00000188312|ACTR6	REV__ENSG00000075089|ENST00000188312|ACTR6	MULTI-SECPEP	A375_MHC_IP_R2	2	566.69873046875	2	566.785296	1131.55604	-0.6992	-0.00039629	2.9855	0.0016921	2.2863	0.0012958	566.7858055021408	36.495	0.61068	37.266	36.953	37.564	0.7709					30	11	4	0	0	0	0.26634	1	13199	13199		57.108	22.706	1	4778700	+		36776	16648	26900	27121	35794	35794					-0.004477662532735849
NESKSEMDEM	10	Unmodified	_NESKSEMDEM_					0	0	0		ENSG00000159256|ENST00000400485|MORC3;ENST00000551367.5_1_21:37741970-37758388:+|nuORF;ENST00000547657.1_1_21:37741970-37758388:+|nuORF	ENSG00000159256|ENST00000400485|MORC3	ENSG00000159256|ENST00000400485|MORC3	MSMS	A375_MHC_IP_R2	2	600.230712890625	2	600.231378	1198.4482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.81	1	132	131.5	132.5	0.18953								0	0	0	0.15353	1	51850	51850		9.3831	2.66	1				36777	6361	26901	27122	35795	35795					-0.14308266961211302
NESKTLLIK	9	Unmodified	_NESKTLLIK_					0	0	0			REV__nc|ENSG00000126337|O76013-2|KRT36	REV__nc|ENSG00000126337|O76013-2|KRT36	MULTI-MSMS	A375_MHC_IP_R1	1	523.7159423828125	2	523.316232	1044.61791	-0.3516	-0.000184	-0.21467	-0.00011234	-0.56627	-0.00029634	523.3161673954589	39.249	0.30647	39.249	39.085	39.391	0					8	5	2	0	0	0	0.57432	1	13444	13444		16.149	0	1	1878000	+	+	36778	15850	26902	27123	35796	35796					0.09738585165860059
NESLFGKKY	9	Unmodified	_NESLFGKKY_					0	0	0		ENSG00000115641|ENST00000530340|FHL2;nc|ENSG00000115641|Q14192-2|FHL2	ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	MULTI-MSMS	A375_MHC_IP_R1	1	362.9255676269531	3	362.525713	1084.55531	0.077573	2.8122E-05	-0.35399	-0.00012833	-0.27642	-0.00010021	362.5255907369233	33.116	2.0247	33.116	32.785	34.81	0					127	39	6	0	0	0	0.040308	2	10727	10727;10977		53.404	27.383	1	497610000			36779	3328	26903	27124	35797;35798	35797					0.016414390976706272
NESLFGKKY	9	Unmodified	_NESLFGKKY_					0	0	0		ENSG00000115641|ENST00000530340|FHL2;nc|ENSG00000115641|Q14192-2|FHL2	ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	MULTI-MSMS	A375_MHC_IP_R1	1	543.1558837890625	2	543.284931	1084.55531	-0.67851	-0.00036863	0.060533	3.2886E-05	-0.61798	-0.00033574	543.2850232926002	33.114	1.9234	33.114	32.887	34.81	0					109	37	5	0	0	0	7.2128E-11	3	10789	10728;10789;10976		226.55	130.44	1	394640000			36780	3328	26903	27124	35799;35800;35801	35800					0.016414390976706272
NESLFGKKY	9	Unmodified	_NESLFGKKY_					0	0	0		ENSG00000115641|ENST00000530340|FHL2;nc|ENSG00000115641|Q14192-2|FHL2	ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	MULTI-MSMS	A375_MHC_IP_R2	2	362.92559814453125	3	362.525713	1084.55531	-0.15768	-5.7163E-05	-0.41669	-0.00015106	-0.57437	-0.00020823	362.5255879463691	32.349	1.83	33.086	32.654	34.484	0.73692					114	35	6	0	0	0	0.064406	3	11419	11419;11616;11689		45.74	15.888	1	519080000			36781	3328	26903	27124	35802;35803;35804	35802					0.016414390976706272
NESLFGKKY	9	Unmodified	_NESLFGKKY_					0	0	0		ENSG00000115641|ENST00000530340|FHL2;nc|ENSG00000115641|Q14192-2|FHL2	ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	MULTI-MSMS	A375_MHC_IP_R2	2	543.1561279296875	2	543.284931	1084.55531	-0.8536	-0.00046375	-0.010494	-5.7015E-06	-0.8641	-0.00046945	543.2849568339659	32.249	1.9828	32.986	32.755	34.738	0.73692					106	38	5	0	0	0	1.633E-06	1	11473	11473		211.85	126.21	1	346500000			36782	3328	26903	27124	35805	35805					0.016414390976706272
NESLLFYLE	9	Unmodified	_NESLLFYLE_					0	0	0		ENSG00000101850|ENST00000467482|GPR143	ENSG00000101850|ENST00000467482|GPR143	ENSG00000101850|ENST00000467482|GPR143	MULTI-SECPEP	A375_MHC_IP_R1	1	564.1813354492188	2	564.284597	1126.55464	-0.42879	-0.00024196	-2.0952	-0.0011823	-2.524	-0.0014243	564.2831715350841	57.848	0.40594	57.848	57.568	57.974	0					11	7	2	0	0	0	0.46045	1	20743	20743		29.082	0	1	2351900			36783	2328	26904	27125	35806	35806					-0.003574003420453664
NESNGLQSF	9	Unmodified	_NESNGLQSF_					0	0	0			REV__nc|ENSG00000159708|Q1X8D7-3|LRRC36	REV__nc|ENSG00000159708|Q1X8D7-3|LRRC36	MULTI-MSMS	A375_MHC_IP_R1	1	498.6609802246094	2	498.225071	994.435589	-0.4778	-0.00023805	-0.062823	-3.13E-05	-0.54062	-0.00026935	498.2250771958727	31.195	0.55679	31.195	30.908	31.465	0					14	10	2	0	0	0	0.60101	1	10017	10017		14.838	0	1	1456100	+		36784	20132	26905	27126	35807	35807					-0.0618517424690026
NESPLKYLF	9	Unmodified	_NESPLKYLF_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-MSMS	A375_MHC_IP_R2	2	555.7996215820312	2	555.795132	1109.57571	-0.75167	-0.00041778	1.4465	0.00080397	0.69484	0.00038619	556.2978407737377	102.13	0.40598	102.89	102.77	103.18	0.76428					10	7	2	0	0	0	0.29123	1	38681	38681		31.268	0	1	728040			36785	3195	26906	27127	35808	35808					0.025306097574684827
NESPLKYLF	9	Unmodified	_NESPLKYLF_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-MATCH	A375_MHC_IP_R1	1		2	555.795132	1109.57571	-0.51772	-0.00028775	-0.039498	-2.1953E-05	-0.55722	-0.0003097	556.2963944558946	103.19	0.25514	103.19	103.01	103.27	0	0.15003	-0.00047719	NaN	31.268	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	871060			36786	3195	26906	27127							0.025306097574684827
NESQNLYGY	9	Unmodified	_NESQNLYGY_					0	0	0		nc|ENSG00000007306|Q14002-2|CEACAM7;ENSG00000007306|ENST00000401731|CEACAM7	nc|ENSG00000007306|Q14002-2|CEACAM7	nc|ENSG00000007306|Q14002-2|CEACAM7	MULTI-MSMS	A375_MHC_IP_R2	2	544.6387329101562	2	544.238178	1086.4618	-0.62304	-0.00033908	1.2205	0.00066422	0.59742	0.00032514	544.2387192899802	46.912	0.76377	47.673	47.309	48.073	0.76128					22	14	2	0	0	0	0.46038	1	17578	17578		21.747	0.20967	1	3496200			36787	14451	26907	27128	35809	35809					-0.07796905075406357
NESQNLYGY	9	Unmodified	_NESQNLYGY_					0	0	0		nc|ENSG00000007306|Q14002-2|CEACAM7;ENSG00000007306|ENST00000401731|CEACAM7	nc|ENSG00000007306|Q14002-2|CEACAM7	nc|ENSG00000007306|Q14002-2|CEACAM7	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	544.238178	1086.4618	-0.62304	-0.00033908	1.2205	0.00066422	0.59742	0.00032514	544.2387192899802	46.912	0.76377	47.673	47.309	48.073	0.76128	0.071125	-2.2304E-05	NaN	21.747	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3496200			36788	14451	26907	27128							-0.07796905075406357
NESSGNVCIY	10	Unmodified	_NESSGNVCIY_					0	0	0			REV__ENSG00000123496|ENST00000243213|IL13RA2	REV__ENSG00000123496|ENST00000243213|IL13RA2	MULTI-MSMS	A375_MHC_IP_R1	1	543.6318969726562	2	543.232039	1084.44952	-0.60005	-0.00032597	-0.070931	-3.8532E-05	-0.67098	-0.0003645	543.2319539907104	95.983	0.55788	95.983	95.767	96.325	0					16	10	2	0	0	0	0.70651	1	35307	35307		9.3831	0	1	1396600	+		36789	18247	26908	27129	35810	35810					-0.08932264810118795
NESSRYELL	9	Unmodified	_NESSRYELL_					0	0	0			REV__ENSG00000124491|ENST00000264870|F13A1	REV__ENSG00000124491|ENST00000264870|F13A1	MULTI-MSMS	A375_MHC_IP_R1	1	556.1738891601562	2	555.774928	1109.5353	-0.75764	-0.00042108	-0.65537	-0.00036424	-1.413	-0.00078532	555.7744086850697	85.003	0.76472	85.003	84.697	85.462	0					43	14	5	0	0	0	0.11629	1	31179	31179		47.749	3.8904	1	12589000	+		36790	18307	26909	27130	35811	35811					-0.015083566329394671
NESSRYELL	9	Unmodified	_NESSRYELL_					0	0	0			REV__ENSG00000124491|ENST00000264870|F13A1	REV__ENSG00000124491|ENST00000264870|F13A1	MULTI-SECPEP	A375_MHC_IP_R2	2	556.1732177734375	2	555.774928	1109.5353	-0.68861	-0.00038271	-1.3398	-0.00074462	-2.0284	-0.0011273	555.7740603855053	84.162	0.71224	84.901	84.663	85.375	0.73962					34	13	3	0	0	0	0.27742	1	32007	32007		43.772	3.5332	1	11163000	+		36791	18307	26909	27130	35812	35812					-0.015083566329394671
NESSYWWD	8	Unmodified	_NESSYWWD_					0	0	0			REV__ENSG00000108733|ENST00000225873|PEX12	REV__ENSG00000108733|ENST00000225873|PEX12	MULTI-MSMS	A375_MHC_IP_R1	1	543.7241821289062	2	543.711796	1085.40904	-0.67098	-0.00036482	1.2408	0.00067465	0.56984	0.00030983	543.7133819684167	36.431	1.5224	36.431	35.625	37.148	0					47	29	3	0	0	0	0.77515	1	11876	11876		12.532	4.376	1	2032800	+		36792	17550	26910	27131	35813	35813					-0.13024863138230103
NESVFVIR	8	Unmodified	_NESVFVIR_					0	0	0			REV__nc|ENSG00000084676|Q15788-2|NCOA1	REV__nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-SECPEP	A375_MHC_IP_R2	2	482.99212646484375	2	482.266542	962.51853	-0.84176	-0.00040595	0.69666	0.00033597	-0.1451	-6.9978E-05	482.2665010716971	38.153	0.61427	38.927	38.636	39.25	0.77451					16	11	2	0	0	0	0.8957	1	13917	13917		10.824	0	1	1763100	+		36793	16826	26911	27132	35814	35814					0.03577187271764615
NESYMMSTPV	10	Unmodified	_NESYMMSTPV_					0	0	0			REV__ENST00000473632.1_1_20:39793920-39794467:+|nuORF	REV__ENST00000473632.1_1_20:39793920-39794467:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	580.1444091796875	2	579.743924	1157.4733	-0.31904	-0.00018496	0.24472	0.00014187	-0.074324	-4.3089E-05	579.7439284915107	65.489	0.51141	65.489	65.257	65.768	0					19	9	3	0	0	0	0.91909	1	23703	23703		5.7319	0	1	2573000	+		36794	18279	26912	27133	35815	35815					-0.0991416736796964
NETASIWNQ	9	Unmodified	_NETASIWNQ_					0	0	0		DNAH5|p.G416E|1|0.55|ENSG00000039139|chr5:13914593-13914593|C/T|missense_variant	DNAH5|p.G416E|1|0.55|ENSG00000039139|chr5:13914593-13914593|C/T|missense_variant	DNAH5|p.G416E|1|0.55|ENSG00000039139|chr5:13914593-13914593|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	531.6716918945312	2	531.74617	1061.47779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.652	1	59.401	58.901	59.901	0.74894								0	0	0	0.15069	1	22191	22191		20.454	3.5113	1				36795	766	26913	27134	35816	35816					-0.0504919883853745
NETDILSQY	9	Unmodified	_NETDILSQY_					0	0	0		ENSG00000149480|ENST00000278823|MTA2;ENST00000532239.1_1_11:62365783-62365918:-|nuORF;ENST00000526844.1_1_11:62365783-62368922:-|nuORF	ENSG00000149480|ENST00000278823|MTA2	ENSG00000149480|ENST00000278823|MTA2	MULTI-MSMS	A375_MHC_IP_R1	1	542.184814453125	2	541.753661	1081.49277	-0.61541	-0.0003334	3.2318	0.0017508	2.6164	0.0014174	541.7546117783222	79.752	0.7185	79.752	79.418	80.136	0					33	13	4	0	0	0	0.19747	1	29214	29214		38.176	11.292	1	3544700			36796	5807	26914	27135	35817	35817					-0.04471751761161613
NETDILSQY	9	Unmodified	_NETDILSQY_					0	0	0		ENSG00000149480|ENST00000278823|MTA2;ENST00000532239.1_1_11:62365783-62365918:-|nuORF;ENST00000526844.1_1_11:62365783-62368922:-|nuORF	ENSG00000149480|ENST00000278823|MTA2	ENSG00000149480|ENST00000278823|MTA2	MULTI-SECPEP	A375_MHC_IP_R1	1	1082.9019775390625	1	1082.50005	1081.49277	0.09473	0.00010255	0.92991	0.0010066	1.0246	0.0011092	1082.5013622162767	79.753	0.46053	79.753	79.574	80.034	0					13	8	2	0	0	0	0.011204	1	29124	29124		135.86	60.103	1	1797600			36797	5807	26914	27135	35818	35818					-0.04471751761161613
NETDILSQY	9	Unmodified	_NETDILSQY_					0	0	0		ENSG00000149480|ENST00000278823|MTA2;ENST00000532239.1_1_11:62365783-62365918:-|nuORF;ENST00000526844.1_1_11:62365783-62368922:-|nuORF	ENSG00000149480|ENST00000278823|MTA2	ENSG00000149480|ENST00000278823|MTA2	MULTI-MSMS	A375_MHC_IP_R2	2	542.184326171875	2	541.753661	1081.49277	-0.72983	-0.00039539	0.94622	0.00051262	0.21639	0.00011723	541.7543985853323	79.221	0.8104	79.966	79.489	80.299	0.74474					27	15	3	0	0	0	0.082375	1	30018	30018		53.833	19.431	1	2371400			36798	5807	26914	27135	35819	35819					-0.04471751761161613
NETDILSQY	9	Unmodified	_NETDILSQY_					0	0	0		ENSG00000149480|ENST00000278823|MTA2;ENST00000532239.1_1_11:62365783-62365918:-|nuORF;ENST00000526844.1_1_11:62365783-62368922:-|nuORF	ENSG00000149480|ENST00000278823|MTA2	ENSG00000149480|ENST00000278823|MTA2	MULTI-MSMS	A375_MHC_IP_R2	2	1082.574951171875	1	1082.50005	1081.49277	0.18946	0.00020509	0.35132	0.0003803	0.54078	0.00058539	1082.501009799531	79.245	0.45542	79.99	79.693	80.149	0.74474					12	8	2	0	0	0	0.0035129	1	30077	30077		159.1	73.459	1	2006200			36799	5807	26914	27135	35820	35820					-0.04471751761161613
NETDRLVHW	9	Unmodified	_NETDRLVHW_					0	0	0		ENST00000476479.1_1_7:55479080-55499010:+|nuORF;ENST00000452107.6_1_7:55447520-55499010:+|nuORF;ENSG00000132434|ENST00000254770|LANCL2	ENST00000476479.1_1_7:55479080-55499010:+|nuORF	ENST00000476479.1_1_7:55479080-55499010:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	390.92828369140625	3	390.528117	1168.56252	0.52697	0.0002058	-0.42182	-0.00016473	0.10515	4.1063E-05	390.5278275169307	49.496	0.65867	49.496	49.084	49.743	0					25	12	3	0	0	0	0.22528	1	17509	17509		27.223	15.048	1	2742000			36800	4408	26915	27136	35821	35821					-0.015018283019117007
NETDRLVHW	9	Unmodified	_NETDRLVHW_					0	0	0		ENST00000476479.1_1_7:55479080-55499010:+|nuORF;ENST00000452107.6_1_7:55447520-55499010:+|nuORF;ENSG00000132434|ENST00000254770|LANCL2	ENST00000476479.1_1_7:55479080-55499010:+|nuORF	ENST00000476479.1_1_7:55479080-55499010:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	390.92779541015625	3	390.528117	1168.56252	-0.24989	-9.759E-05	0.065251	2.5482E-05	-0.18464	-7.2108E-05	390.528068673881	48.747	0.61139	49.504	49.231	49.843	0.75737					18	11	2	0	0	0	0.34064	1	18300	18300		20.581	4.3064	1	3434300			36801	4408	26915	27136	35822	35822					-0.015018283019117007
NETDYVEVM	9	Unmodified	_NETDYVEVM_					0	0	0		ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	MULTI-MSMS	A375_MHC_IP_R1	1	550.6504516601562	2	550.234247	1098.45394	-0.53912	-0.00029664	-0.95124	-0.00052341	-1.4904	-0.00082005	550.2335691586935	75.085	0.3534	75.085	74.958	75.312	0					12	6	2	0	0	0	0.41409	1	27318	27318		24.021	4.5816	1	1171900			36802	4911	26916	27137	35823	35823					-0.09134800387209907
NETDYVEVM	9	Unmodified	_NETDYVEVM_					0	0	0		ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6502685546875	2	550.234247	1098.45394	-0.83484	-0.00045936	0.51934	0.00028576	-0.31549	-0.00017359	550.2345561745055	74.668	0.45893	75.405	75.06	75.519	0.73752					13	8	2	0	0	0	0.63327	1	28228	28228		13.042	0	1	1236300			36803	4911	26916	27137	35824	35824					-0.09134800387209907
NETEQHTY	8	Unmodified	_NETEQHTY_					0	0	0		nc|ENSG00000116698|Q92540-4|SMG7;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;ENSG00000116698|ENST00000688051|SMG7	nc|ENSG00000116698|Q92540-4|SMG7	nc|ENSG00000116698|Q92540-4|SMG7	MULTI-SECPEP	A375_MHC_IP_R2	2	510.45123291015625	2	511.214703	1020.41485	-1.0796	-0.00055189	0.91986	0.00047025	-0.15971	-8.1645E-05	511.2149926064544	60.096	0.66069	60.844	60.45	61.111	0.74714					14	12	2	0	0	0	0.972	1	22711	22711		2.3027	0	1	1502500			36804	14558	26917	27138	35825	35825					-0.09453764626562133
NETGFSTGGGY	11	Unmodified	_NETGFSTGGGY_					0	0	0			REV__KRT25|p.G33E|1|0.31|ENSG00000204897|chr17:40755174-40755174|C/T|missense_variant	REV__KRT25|p.G33E|1|0.31|ENSG00000204897|chr17:40755174-40755174|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	545.1538696289062	2	545.22781	1088.44107	-0.50145	-0.00027341	0.10899	5.9423E-05	-0.39246	-0.00021398	545.2272593128321	47.574	0.35331	47.574	47.315	47.668	0					9	6	2	0	0	0	0.73016	1	16646	16646		8.7454	0.83525	1	1376100	+		36805	26871	26918	27139	35826	35826					-0.09961495455058866
NETIWYLKYH	10	Unmodified	_NETIWYLKYH_					0	0	0		ENSG00000113732|ENST00000519374|ATP6V0E1	ENSG00000113732|ENST00000519374|ATP6V0E1	ENSG00000113732|ENST00000519374|ATP6V0E1	MULTI-SECPEP	A375_MHC_IP_R2	2	683.749267578125	2	683.843145	1365.67174	-0.46952	-0.00032108	1.7662	0.0012078	1.2966	0.0008867	683.8460475379335	111.47	0.25678	112.2	112.01	112.26	0.73692					5	4	2	0	0	0	0.92772	1	41991	41991		7.609	0	1	3194200			36806	3178	26919	27140	35827	35827					0.0035275759755677427
NETKIRSY	8	Unmodified	_NETKIRSY_					0	0	0		nc|ENSG00000169607|Q8IYA6-3|CKAP2L;ENSG00000169607|ENST00000302450|CKAP2L	nc|ENSG00000169607|Q8IYA6-3|CKAP2L	nc|ENSG00000169607|Q8IYA6-3|CKAP2L	MSMS	A375_MHC_IP_R1	1	505.72332763671875	2	505.766906	1009.51926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.085	1	59.085	58.585	59.585	0								0	0	0	0.16876	1	21242	21242		15.847	2.3393	1				36807	7421	26920	27141	35828	35828					0.014879819208090339
NETLIKNGY	9	Unmodified	_NETLIKNGY_					0	0	0			REV__tr|U7T5M0|U7T5M0_FUSNUConjugaltransferproteinTraDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00008PE=4SV=1	REV__tr|U7T5M0|U7T5M0_FUSNUConjugaltransferproteinTraDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00008PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	526.1951293945312	2	526.274564	1050.53457	-0.61195	-0.00032206	0.041051	2.1604E-05	-0.5709	-0.00030045	526.2746600244378	68.486	1.7743	68.486	68.108	69.882	0					88	34	4	0	0	0	0.38603	1	25177	25177		25.399	0	1	46136000	+		36808	28829	26921	27142	35829	35829					0.011328487180207958
NETLIKNGY	9	Unmodified	_NETLIKNGY_					0	0	0			REV__tr|U7T5M0|U7T5M0_FUSNUConjugaltransferproteinTraDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00008PE=4SV=1	REV__tr|U7T5M0|U7T5M0_FUSNUConjugaltransferproteinTraDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00008PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	526.1951904296875	2	526.274564	1050.53457	-0.43389	-0.00022834	-0.33498	-0.00017629	-0.76887	-0.00040464	526.2743830320169	67.501	2.1321	68.237	67.801	69.933	0.73631					95	41	5	0	0	0	0.32092	2	25956	25956;25969		29.082	0	1	49963000	+		36809	28829	26921	27142	35830;35831	35830					0.011328487180207958
NETLIVSKF	9	Unmodified	_NETLIVSKF_					0	0	0		ENSG00000116455|ENST00000235090|WDR77	ENSG00000116455|ENST00000235090|WDR77	ENSG00000116455|ENST00000235090|WDR77	MULTI-SECPEP	A375_MHC_IP_R1	1	526.1951904296875	2	525.795132	1049.57571	-0.28161	-0.00014807	-0.0090206	-4.743E-06	-0.29063	-0.00015281	525.7950810814087	68.944	1.3179	68.944	68.514	69.832	0					67	25	5	0	0	0	0.010673	1	24956	24956		150.62	54.252	1	41987000			36810	3396	26922	27143	35832	35832					0.052906097574805244
NETLIVSKF	9	Unmodified	_NETLIVSKF_					0	0	0		ENSG00000116455|ENST00000235090|WDR77	ENSG00000116455|ENST00000235090|WDR77	ENSG00000116455|ENST00000235090|WDR77	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1948852539062	2	525.795132	1049.57571	-0.37361	-0.00019644	-0.46881	-0.0002465	-0.84241	-0.00044294	525.7950122580089	68.055	1.5749	68.79	68.204	69.779	0.73511					71	30	4	0	0	0	0.0069175	1	25736	25736		174.48	67.542	1	39762000			36811	3396	26922	27143	35833	35833					0.052906097574805244
NETLNFWTHFI	11	Unmodified	_NETLNFWTHFI_					0	0	0		ENSG00000188582|ENST00000340634|PAQR9	ENSG00000188582|ENST00000340634|PAQR9	ENSG00000188582|ENST00000340634|PAQR9	MSMS	A375_MHC_IP_R1	1	711.2674560546875	2	711.346052	1420.67755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.613	1	70.613	70.113	71.113	0								0	0	0	0.16152	1	25642	25642		10.8	0	1				36812	8916	26923	27144	35834	35834					-0.015961438907652337
NETLSLVYIY	10	Unmodified	_NETLSLVYIY_					0	0	0			REV__ITGB8|p.H226Y|1|0.2|ENSG00000105855|chr7:20380706-20380706|C/T|missense_variant	REV__ITGB8|p.H226Y|1|0.2|ENSG00000105855|chr7:20380706-20380706|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	607.93994140625	2	607.818804	1213.62306	-0.32593	-0.00019811	-0.22869	-0.000139	-0.55462	-0.00033711	607.8187654971771	74.506	0.96452	74.506	73.943	74.908	0					26	18	2	0	0	0	0.71455	1	27231	27231		10.074	4.8433	1	3327100	+		36813	26808	26924	27145	35835	35835					0.02478844237816702
NETQNPESLL	10	Unmodified	_NETQNPESLL_					0	0	0			REV__SST|p.D66N|1|0.35|ENSG00000157005|chr3:187669220-187669220|C/T|missense_variant	REV__SST|p.D66N|1|0.35|ENSG00000157005|chr3:187669220-187669220|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	573.1299438476562	2	572.777667	1143.54078	-0.18348	-0.00010509	0.0083408	4.7774E-06	-0.17514	-0.00010032	572.777771157099	63.936	0.40495	64.676	64.446	64.85	0.74022					9	7	2	0	0	0	0.87163	1	24277	24277		13.906	1.6654	1	1183100	+		36814	20006	26925	27146	35836	35836					-0.025246778411201376
NETSIFSFK	9	Unmodified	_NETSIFSFK_					0	0	0			REV__KNTC1|p.S193F|1|0.4|ENSG00000184445|chr12:122544178-122544178|C/T|missense_variant	REV__KNTC1|p.S193F|1|0.4|ENSG00000184445|chr12:122544178-122544178|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	358.1101989746094	3	358.181835	1071.52368	-0.14395	-5.1561E-05	-0.15452	-5.5345E-05	-0.29847	-0.00010691	358.181629342271	36.487	0.25345	36.487	36.287	36.541	0					6	4	2	0	0	0	0.69507	1	12197	12197		9.544	2.5069	1	475350	+		36815	26868	26926	27147	35837	35837					-0.00922553656278069
NETSNMSIY	9	Unmodified	_NETSNMSIY_					0	0	0		ENSG00000110723|ENST00000265843|EXPH5;nc|ENSG00000110723|Q8NEV8-2|EXPH5;EXPH5|p.R301Afs*5|1|0.4|ENSG00000110723|chr11:108514602-108514606|TCCCT/-|frameshift_variant	ENSG00000110723|ENST00000265843|EXPH5	ENSG00000110723|ENST00000265843|EXPH5	MSMS	A375_MHC_IP_R1	1	529.7063598632812	2	529.726589	1057.43863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.794	1	81.794	81.294	82.294	0								0	0	0	0.15486	1	29896	29896		12.532	0.89125	1				36816	2945	26927	27148	35838	35838					-0.08779667184376194
NEVARLFDLY	10	Unmodified	_NEVARLFDLY_					0	0	0			REV__nc|ENSG00000186976|Q5THR3-3|EFCAB6	REV__nc|ENSG00000186976|Q5THR3-3|EFCAB6	MULTI-SECPEP	A375_MHC_IP_R1	1	413.64373779296875	3	413.883789	1238.62954	0.44284	0.00018329	-1.2462	-0.00051579	-0.80339	-0.00033251	414.2169900397142	22.999	0.20071	22.999	22.873	23.074	0					5	3	2	0	0	0	0.93194	1	6188	6188		1.4551	0	1	853690	+		36817	22001	26928	27149	35839	35839					0.01976782189194637
NEVASLSKKF	10	Unmodified	_NEVASLSKKF_					0	0	0		ENSG00000197712|ENST00000358869|FAM114A1;ENST00000508737.1_1_4:38930819-38945175:+|nuORF;nc|ENSG00000197712|Q8IWE2-2|FAM114A1	ENSG00000197712|ENST00000358869|FAM114A1	ENSG00000197712|ENST00000358869|FAM114A1	MULTI-SECPEP	A375_MHC_IP_R1	1	374.93634033203125	3	374.876634	1121.60807	0.53959	0.00020228	-2.6469	-0.00099225	-2.1073	-0.00078997	374.87644074652775	35.625	0.91735	35.625	35.319	36.236	0					44	17	5	0	0	0	0.68818	1	11869	11869		32.616	27.32	1	7551300			36818	9186	26929	27150	35840	35840					0.05213397160468958
NEVASLSKKF	10	Unmodified	_NEVASLSKKF_					0	0	0		ENSG00000197712|ENST00000358869|FAM114A1;ENST00000508737.1_1_4:38930819-38945175:+|nuORF;nc|ENSG00000197712|Q8IWE2-2|FAM114A1	ENSG00000197712|ENST00000358869|FAM114A1	ENSG00000197712|ENST00000358869|FAM114A1	MULTI-SECPEP	A375_MHC_IP_R1	1	561.6554565429688	2	561.811313	1121.60807	-0.24526	-0.00013779	-0.89365	-0.00050206	-1.1389	-0.00063985	561.8112074180684	35.658	0.96899	35.658	35.013	35.982	0					34	18	3	0	0	0	0.22091	1	11910	11910		70.321	48.731	1	8974000			36819	9186	26929	27150	35841	35841					0.05213397160468958
NEVASLSKKF	10	Unmodified	_NEVASLSKKF_					0	0	0		ENSG00000197712|ENST00000358869|FAM114A1;ENST00000508737.1_1_4:38930819-38945175:+|nuORF;nc|ENSG00000197712|Q8IWE2-2|FAM114A1	ENSG00000197712|ENST00000358869|FAM114A1	ENSG00000197712|ENST00000358869|FAM114A1	MULTI-MSMS	A375_MHC_IP_R2	2	562.2113647460938	2	561.811313	1121.60807	-0.78247	-0.0004396	-0.69489	-0.0003904	-1.4774	-0.00083	561.8113666170372	34.787	0.55606	35.55	35.273	35.829	0.76338					30	10	4	0	0	0	0.0024994	1	12569	12569		109.15	68.907	1	8812000			36820	9186	26929	27150	35842	35842					0.05213397160468958
NEVASLSKKF	10	Unmodified	_NEVASLSKKF_					0	0	0		ENSG00000197712|ENST00000358869|FAM114A1;ENST00000508737.1_1_4:38930819-38945175:+|nuORF;nc|ENSG00000197712|Q8IWE2-2|FAM114A1	ENSG00000197712|ENST00000358869|FAM114A1	ENSG00000197712|ENST00000358869|FAM114A1	MULTI-SECPEP	A375_MHC_IP_R2	2	375.2763977050781	3	374.876634	1121.60807	0.11458	4.2952E-05	-3.1859	-0.0011943	-3.0713	-0.0011514	375.2090832690897	34.719	0.75788	35.482	35.171	35.929	0.76338					32	14	3	0	0	0	0.74574	1	12582	12582		33.821	19.603	1	6154000			36821	9186	26929	27150	35843	35843					0.05213397160468958
NEVCVDWRT	9	Unmodified	_NEVCVDWRT_					0	0	0		VWF|p.G2188E|1|0.15|ENSG00000110799|chr12:5993897-5993897|C/T|missense_variant	VWF|p.G2188E|1|0.15|ENSG00000110799|chr12:5993897-5993897|C/T|missense_variant	VWF|p.G2188E|1|0.15|ENSG00000110799|chr12:5993897-5993897|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	562.211181640625	2	561.255848	1120.49714	-0.26057	-0.00014625	-0.25421	-0.00014268	-0.51478	-0.00028892	561.2556749283013	35.798	0.51078	35.798	35.522	36.033	0					25	9	3	0	0	0	0.58047	1	11867	11867		15.847	0	1	7845300			36822	30156	26930	27151	35844	35844					-0.05828565819274445
NEVDFRHKYFN	11	Unmodified	_NEVDFRHKYFN_					0	0	0			REV__ENST00000380738.8_1_9:15465400-15465454:-|nuORF	REV__ENST00000380738.8_1_9:15465400-15465454:-|nuORF	MSMS	A375_MHC_IP_R1	1	734.8491821289062	2	734.852032	1467.68951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.2	1	81.2	80.7	81.7	0								0	0	0	0.16307	1	29671	29671		2.7352	0.23671	1		+		36823	24221	26931	27152	35845	35845					-0.02562527147574656
NEVDGEYRY	9	Unmodified	_NEVDGEYRY_					0	0	0		ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071|PRDM15;nc|ENSG00000141956|P57071-6|PRDM15;nc|ENSG00000141956|P57071-5|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	MULTI-SECPEP	A375_MHC_IP_R1	1	572.2300415039062	2	572.74891	1143.48327	-0.38757	-0.00022198	-0.014445	-8.2734E-06	-0.40201	-0.00023025	572.7488513116564	31.063	0.70809	31.063	30.806	31.514	0					39	13	4	0	0	0	0.010931	1	9914	9914		136.39	94.552	1	32434000			36824	5279	26932	27153	35846	35846					-0.08273520046691374
NEVDIAVVKR	10	Unmodified	_NEVDIAVVKR_					0	0	0			REV__tr|U7SND9|U7SND9_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01809PE=4SV=1	REV__tr|U7SND9|U7SND9_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01809PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	572.2300415039062	2	571.830037	1141.64552	-0.45916	-0.00026256	0.11153	6.3776E-05	-0.34763	-0.00019878	571.8300666277322	30.97	0.5079	30.97	30.754	31.262	0					16	9	2	0	0	0	0.6774	1	9914	9914		34.402	16.255	1	2153700	+		36825	28323	26933	27154	35847	35847					0.08036488426091637
NEVDPGDWQKF	11	Unmodified	_NEVDPGDWQKF_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	A375_MHC_IP_R1	1	668.203857421875	2	667.804217	1333.59388	-0.5507	-0.00036776	-0.28476	-0.00019016	-0.83546	-0.00055793	667.8039334982957	73.111	0.65793	73.111	72.779	73.437	0					32	12	4	0	0	0	0.042012	1	26579	26579		93.448	69.659	1	7244000			36826	5295	26934	27155	35848	35848					-0.05957300058503279
NEVDPGDWQKF	11	Unmodified	_NEVDPGDWQKF_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	A375_MHC_IP_R2	2	668.2039794921875	2	667.804217	1333.59388	-0.91966	-0.00061416	0.051135	3.4148E-05	-0.86853	-0.00058001	667.8041313054644	72.512	0.55779	73.247	72.973	73.53	0.7354					32	10	4	0	0	0	0.042435	1	27498	27498		89.609	59.768	1	8676100			36827	5295	26934	27155	35849	35849					-0.05957300058503279
NEVEPGYYF	9	Unmodified	_NEVEPGYYF_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-MSMS	A375_MHC_IP_R1	1	559.6446533203125	2	559.245472	1116.47639	-0.67206	-0.00037585	0.11787	6.5919E-05	-0.55419	-0.00030993	559.2454994365447	91.104	1.1641	91.104	90.742	91.906	0					36	22	2	0	0	0	0.030038	1	33430	33430		74.929	38.885	1	15133000			36828	1971	26935	27156	35850	35850					-0.07718832927298536
NEVEQLLYY	9	Unmodified	_NEVEQLLYY_					0	0	0		nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3;ENST00000538366.5_1_1:170010937-170043656:-|nuORF	nc|ENSG00000075945|Q92845-2|KIFAP3	nc|ENSG00000075945|Q92845-2|KIFAP3	MULTI-MSMS	A375_MHC_IP_R1	1	586.698486328125	2	585.787504	1169.56045	-0.10631	-6.2272E-05	-0.26965	-0.00015796	-0.37596	-0.00022023	585.7873603951856	111.31	1.5323	111.31	110.95	112.48	0					47	19	4	0	0	0	0.27064	1	40877	40877		32.786	11.039	1	15493000			36829	1626	26936	27157	35851	35851					-0.017543018303967983
NEVEQLLYY	9	Unmodified	_NEVEQLLYY_					0	0	0		nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3;ENST00000538366.5_1_1:170010937-170043656:-|nuORF	nc|ENSG00000075945|Q92845-2|KIFAP3	nc|ENSG00000075945|Q92845-2|KIFAP3	MULTI-SECPEP	A375_MHC_IP_R2	2	586.1876831054688	2	585.787504	1169.56045	-0.35578	-0.00020841	0.25846	0.00015141	-0.097313	-5.7005E-05	585.7876520616171	110.57	0.81477	111.31	110.94	111.75	0.73692					38	15	3	0	0	0	0.10535	1	41657	41657		92.653	31.296	1	11204000			36830	1626	26936	27157	35852	35852					-0.017543018303967983
NEVFLAKLI	9	Unmodified	_NEVFLAKLI_					0	0	0		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-SECPEP	A375_MHC_IP_R2	2	523.6939697265625	2	523.815867	1045.61718	-0.56672	-0.00029686	-1.8069	-0.00094648	-2.3736	-0.0012433	523.8150320055393	107.85	0.30658	108.6	108.35	108.66	0.75436					7	5	2	0	0	0	0.71341	1	40716	40716		13.042	9.7612	1	468160			36831	6184	26937	27158	35853	35853					0.0961979051680828
NEVFLKLEG	9	Unmodified	_NEVFLKLEG_					0	0	0		ENST00000541225.5_1_17:66883094-66937097:-|nuORF;nc|ENSG00000141338|O94911-1|ABCA8;ENSG00000141338|ENST00000586539|ABCA8;nc|ENSG00000154258|Q8IUA7-4|ABCA9;nc|ENSG00000154258|Q8IUA7-3|ABCA9;ENSG00000154258|ENST00000340001|ABCA9	ENST00000541225.5_1_17:66883094-66937097:-|nuORF;nc|ENSG00000154258|Q8IUA7-4|ABCA9	nc|ENSG00000154258|Q8IUA7-4|ABCA9	MSMS	A375_MHC_IP_R1	1	524.69677734375	2	524.787307	1047.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.845	1	19.845	19.345	20.345	0								0	0	0	0.15411	1	5008	5008		14.838	0.93222	1				36832	5229;6075	26938	27159	35854	35854					0.038183232404207956
NEVFLSEQS	9	Unmodified	_NEVFLSEQS_					0	0	0			REV__nc|ENSG00000172995|Q9UBL0-4|ARPP21	REV__nc|ENSG00000172995|Q9UBL0-4|ARPP21	MSMS	A375_MHC_IP_R2	2	526.6773681640625	2	526.748379	1051.4822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.059	1	80.804	80.304	81.304	0.74474								0	0	0	0.15468	1	30391	30391		13.906	1.3745	1		+		36833	21189	26939	27160	35855	35855					-0.041477344156191975
NEVGYSIRF	9	Unmodified	_NEVGYSIRF_					0	0	0		ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	MULTI-SECPEP	A375_MHC_IP_R2	2	543.1744995117188	2	542.774731	1083.53491	-0.72812	-0.00039521	-0.15387	-8.3518E-05	-0.88199	-0.00047872	542.7747185380534	69.323	0.65915	70.057	69.727	70.386	0.73421					25	12	4	0	0	0	0.65623	1	26290	26290		23.79	11.258	1	3130700			36834	9456	26940	27161	35856	35856					-0.003517315621365924
NEVKSVAW	8	Unmodified	_NEVKSVAW_					0	0	0		ENSG00000144021|ENST00000488633|CIAO1;ENST00000272402.2_1_2:96932116-96934407:+|nuORF;CIAO1|p.E105K|1|0.15|ENSG00000144021|chr2:96267649-96267649|G/A|missense_variant	ENSG00000144021|ENST00000488633|CIAO1	ENSG00000144021|ENST00000488633|CIAO1	MULTI-SECPEP	A375_MHC_IP_R2	2	467.173828125	2	466.745442	931.476331	-0.69255	-0.00032324	0.086701	4.0467E-05	-0.60585	-0.00028278	466.74542050920866	40.091	0.25356	40.866	40.676	40.93	0.77451					6	4	2	0	0	0	0.90057	1	14852	14852		29.082	29.082	1	1300200			36835	5455	26941	27162	35857	35857					0.007852118633763894
NEVLDVDFNRE	11	Unmodified	_NEVLDVDFNRE_					0	0	0			REV__tr|U7SGC3|U7SGC3_FUSNUPhosphatidylglycerol--prolipoproteindiacylglyceryltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lgtPE=3SV=1	REV__tr|U7SGC3|U7SGC3_FUSNUPhosphatidylglycerol--prolipoproteindiacylglyceryltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lgtPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	450.94854736328125	3	450.549246	1348.62591	-0.23044	-0.00010383	-0.24946	-0.0001124	-0.4799	-0.00021622	450.54899124755894	23.252	1.0144	23.252	22.773	23.787	0					35	12	4	0	0	0	0.73239	1	6335	6335		6.6235	6.6235	1	40944000	+		36836	28181	26942	27163	35858	35858					-0.03445932375325356
NEVLEHID	8	Unmodified	_NEVLEHID_					0	0	0			REV__ENSG00000135063|ENST00000303068|ENTREP1	REV__ENSG00000135063|ENST00000303068|ENTREP1	MULTI-SECPEP	A375_MHC_IP_R1	1	485.13702392578125	2	484.737814	967.461075	-0.29176	-0.00014143	-0.38422	-0.00018625	-0.67598	-0.00032767	484.7374652989345	99.589	1.0105	99.589	99.218	100.23	0					43	19	3	0	0	0	0.92636	1	36747	36747		16.942	3.4344	1	25153000	+		36837	18820	26943	27164	35859	35859					-0.023956997244795275
NEVLIQNGS	9	Unmodified	_NEVLIQNGS_					0	0	0		ENSG00000051341|ENST00000264233|POLQ;nc|ENSG00000051341|O75417-2|POLQ	ENSG00000051341|ENST00000264233|POLQ	ENSG00000051341|ENST00000264233|POLQ	MULTI-SECPEP	A375_MHC_IP_R1	1	486.69189453125	2	487.251089	972.487624	-0.33755	-0.00016447	-0.13163	-6.4136E-05	-0.46918	-0.00022861	487.2507613168354	83.73	0.45462	83.73	83.483	83.937	0					11	8	2	0	0	0	0.65527	1	30627	30627		12.241	4.3305	1	1141500			36838	1235	26944	27165	35860	35860					0.0002798916685833319
NEVNALKW	8	Unmodified	_NEVNALKW_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-SECPEP	A375_MHC_IP_R1	1	486.6737976074219	2	487.258717	972.50288	-0.15374	-7.4913E-05	-0.21527	-0.00010489	-0.36902	-0.00017981	487.2586619774194	56.149	0.55651	56.149	55.841	56.397	0					16	10	2	0	0	0	0.8824	1	20063	20063		30.225	0	1	1240200	+		36839	19422	26945	27166	35861	35861					0.015529007547115725
NEVPEEKLY	9	Unmodified	_NEVPEEKLY_					0	0	0		nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4	nc|ENSG00000058668|P23634-7|ATP2B4	nc|ENSG00000058668|P23634-7|ATP2B4	MULTI-SECPEP	A375_MHC_IP_R1	1	561.1795043945312	2	560.779679	1119.5448	-0.41814	-0.00023448	1.6978	0.00095209	1.2797	0.00071761	560.7799567432562	43.621	0.50825	43.621	43.351	43.859	0					24	9	4	0	0	0	0.28216	1	15199	15199		49.933	13.806	1	4131700			36840	1295	26946	27167	35862	35862					-0.010185883474150614
NEVPEEKLY	9	Unmodified	_NEVPEEKLY_					0	0	0		nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4	nc|ENSG00000058668|P23634-7|ATP2B4	nc|ENSG00000058668|P23634-7|ATP2B4	MULTI-MSMS	A375_MHC_IP_R2	2	561.2269897460938	2	560.779679	1119.5448	-0.53812	-0.00030177	1.586	0.0008894	1.0479	0.00058763	560.7801467362024	42.928	0.55672	43.701	43.369	43.926	0.7724					25	10	4	0	0	0	0.064406	1	16005	16005		58.679	22.552	1	3966700			36841	1295	26946	27167	35863	35863					-0.010185883474150614
NEVQVIHVEFD	11	Unmodified	_NEVQVIHVEFD_					0	0	0			REV__ENSG00000138028|ENST00000402394|CGREF1	REV__ENSG00000138028|ENST00000402394|CGREF1	MSMS	A375_MHC_IP_R1	1	665.1065673828125	2	664.827692	1327.64083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.95	1	89.95	89.45	90.45	0								0	0	0	0.16203	1	33053	33053		8.1555	2.4237	1		+		36842	19056	26947	27168	35864	35864					-0.009884405073535163
NEVSKIVQTY	10	Unmodified	_NEVSKIVQTY_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	A375_MHC_IP_R1	1	591.7153930664062	2	590.814053	1179.61355	-0.33992	-0.00020083	-0.036129	-2.1346E-05	-0.37605	-0.00022218	590.8140643293259	52.365	1.0166	52.365	51.728	52.744	0					47	19	4	0	0	0	0.70179	1	18735	18735		11.495	3.3392	1	17010000			36843	1529	26948	27169	35865	35865					0.030930759523016604
NEVSKIVQTY	10	Unmodified	_NEVSKIVQTY_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	A375_MHC_IP_R2	2	590.6365356445312	2	590.814053	1179.61355	-0.81383	-0.00048082	0.049912	2.9489E-05	-0.76392	-0.00045133	590.8140176453444	51.672	0.91562	52.424	51.813	52.729	0.75225					44	17	4	0	0	0	0.061707	1	19533	19533		72.59	47.599	1	17634000			36844	1529	26948	27169	35866	35866					0.030930759523016604
NEVTSWPVAP	10	Unmodified	_NEVTSWPVAP_					0	0	0			REV__ENSG00000149289|ENST00000278590|ZC3H12C	REV__ENSG00000149289|ENST00000278590|ZC3H12C	MULTI-SECPEP	A375_MHC_IP_R1	1	549.7553100585938	2	550.274564	1098.53457	-0.63761	-0.00035086	0.75006	0.00041274	0.11245	6.188E-05	550.274716490557	33.139	0.8113	33.139	32.836	33.648	0					47	15	4	0	0	0	0.42954	1	10764	10764		41.84	11.203	1	36690000	+		36845	19672	26949	27170	35867	35867					-0.010751512820206699
NEVVAGIKEY	10	Unmodified	_NEVVAGIKEY_					0	0	0		ENSG00000123562|ENST00000441076|MORF4L2;ENST00000560710.1_1_15:79184565-79186592:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	ENSG00000123562|ENST00000441076|MORF4L2;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-SECPEP	A375_MHC_IP_R1	1	561.6949462890625	2	561.295496	1120.57644	-0.53948	-0.00030281	0.046913	2.6332E-05	-0.49257	-0.00027648	561.2954241986721	46.52	1.1712	46.52	46.245	47.416	0					54	22	5	0	0	0	0.062781	1	16276	16276		74.306	30.325	1	62387000			36846	3854;8692;12043	26950	27171	35868	35868					0.02097404406526948
NEVVAGIKEY	10	Unmodified	_NEVVAGIKEY_					0	0	0		ENSG00000123562|ENST00000441076|MORF4L2;ENST00000560710.1_1_15:79184565-79186592:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	ENSG00000123562|ENST00000441076|MORF4L2;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	A375_MHC_IP_R2	2	1121.5750732421875	1	1121.58372	1120.57644	0.13031	0.00014615	0.07092	7.9543E-05	0.20123	0.00022569	1121.583723258405	45.762	0.30035	46.527	46.353	46.654	0.76519					8	5	2	0	0	0	0.11158	1	17087	17087		61.165	18.852	1	2922200			36847	3854;8692;12043	26950	27171	35869	35869					0.02097404406526948
NEVVAGIKEY	10	Unmodified	_NEVVAGIKEY_					0	0	0		ENSG00000123562|ENST00000441076|MORF4L2;ENST00000560710.1_1_15:79184565-79186592:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	ENSG00000123562|ENST00000441076|MORF4L2;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-SECPEP	A375_MHC_IP_R2	2	561.6952514648438	2	561.295496	1120.57644	-0.58855	-0.00033035	-0.15703	-8.8141E-05	-0.74558	-0.00041849	561.2953602486824	45.766	0.85645	46.531	46.201	47.058	0.76518					49	16	4	0	0	0	0.023935	1	17063	17063		99.864	28.156	1	55301000			36848	3854;8692;12043	26950	27171	35870	35870					0.02097404406526948
NEVVAGIKEY	10	Unmodified	_NEVVAGIKEY_					0	0	0		ENSG00000123562|ENST00000441076|MORF4L2;ENST00000560710.1_1_15:79184565-79186592:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	ENSG00000123562|ENST00000441076|MORF4L2;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MATCH	A375_MHC_IP_R1	1		1	1121.58372	1120.57644	-0.0090691	-1.0172E-05	0.12757	0.00014309	0.11851	0.00013291	1121.584041398768	46.52	0.40324	46.52	46.295	46.699	0	-0.003465	1.8039E-05	NaN	61.165	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2978100			36849	3854;8692;12043	26950	27171							0.02097404406526948
NEVVGRLI	8	Unmodified	_NEVVGRLI_					0	0	0		ENSG00000132718|ENST00000368324|SYT11	ENSG00000132718|ENST00000368324|SYT11	ENSG00000132718|ENST00000368324|SYT11	MULTI-MSMS	A375_MHC_IP_R1	1	450.6690979003906	2	450.269084	898.523616	-0.14841	-6.6823E-05	0.17813	8.0205E-05	0.029719	1.3382E-05	450.2692897111088	57.655	1.1186	57.655	57.109	58.228	0					49	21	4	0	0	0	0.13365	1	20631	20631		88.904	38.049	1	5522600			36850	4444	26951	27172	35871	35871					0.07029491134380805
NEVVGRLI	8	Unmodified	_NEVVGRLI_					0	0	0		ENSG00000132718|ENST00000368324|SYT11	ENSG00000132718|ENST00000368324|SYT11	ENSG00000132718|ENST00000368324|SYT11	MULTI-MSMS	A375_MHC_IP_R2	2	450.66900634765625	2	450.269084	898.523616	-0.69198	-0.00031158	0.43734	0.00019692	-0.25464	-0.00011466	450.2692532747673	56.578	0.81505	57.329	57	57.815	0.75015					28	15	3	0	0	0	0.19008	1	21380	21380		68.081	13.307	1	4753200			36851	4444	26951	27172	35872	35872					0.07029491134380805
NEVYDNYQN	9	Unmodified	_NEVYDNYQN_					0	0	0		ENST00000470811.5_1_3:156544101-156697065:+|nuORF;ENSG00000197980|ENST00000356539|LEKR1	ENST00000470811.5_1_3:156544101-156697065:+|nuORF	ENST00000470811.5_1_3:156544101-156697065:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	580.1380004882812	2	579.738542	1157.46253	-0.28108	-0.00016295	-0.46109	-0.00026731	-0.74217	-0.00043027	579.7382795314492	30.489	0.45351	31.208	31.013	31.467	0.71857					12	8	2	0	0	0	0.69381	1	10748	10748		20.415	10.341	1	1898800			36852	9217	26952	27173	35873	35873					-0.10990110426382671
NEVYDNYQN	9	Unmodified	_NEVYDNYQN_					0	0	0		ENST00000470811.5_1_3:156544101-156697065:+|nuORF;ENSG00000197980|ENST00000356539|LEKR1	ENST00000470811.5_1_3:156544101-156697065:+|nuORF	ENST00000470811.5_1_3:156544101-156697065:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	579.738542	1157.46253	-0.33935	-0.00019674	-0.32553	-0.00018872	-0.66488	-0.00038546	579.7383296712579	31.171	0.40483	31.171	30.857	31.262	0	-0.018612	7.8033E-05	NaN	20.415	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1995900			36853	9217	26952	27173							-0.10990110426382671
NEVYEAVKNY	10	Unmodified	_NEVYEAVKNY_					0	0	0		nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;PBRM1|p.E1214Rfs*6|1|0.21|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant;PBRM1|p.S1391Efs*5|1|0.7|ENSG00000163939|chr3:52561877-52561884|ATCTCACT/-|frameshift_variant;nc|ENSG00000163939|Q86U86-6|PBRM1;ENST00000480064.1_1_3:52643285-52649409:-|nuORF	nc|ENSG00000163939|Q86U86-4|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	MULTI-MSMS	A375_MHC_IP_R1	1	615.1954345703125	2	614.79586	1227.57717	-0.3355	-0.00020626	-0.1223	-7.519E-05	-0.4578	-0.00028146	614.7957352899998	46.268	0.90947	46.268	45.941	46.85	0					47	17	4	0	0	0	3.2592E-05	1	16172	16172		179.28	127.65	1	27570000			36854	14724	26953	27174	35874	35874					-0.027518009444293057
NEVYEAVKNY	10	Unmodified	_NEVYEAVKNY_					0	0	0		nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;PBRM1|p.E1214Rfs*6|1|0.21|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant;PBRM1|p.S1391Efs*5|1|0.7|ENSG00000163939|chr3:52561877-52561884|ATCTCACT/-|frameshift_variant;nc|ENSG00000163939|Q86U86-6|PBRM1;ENST00000480064.1_1_3:52643285-52649409:-|nuORF	nc|ENSG00000163939|Q86U86-4|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	MULTI-SECPEP	A375_MHC_IP_R2	2	615.1950073242188	2	614.79586	1227.57717	-0.60466	-0.00037174	0.17538	0.00010782	-0.42927	-0.00026392	614.7959036469066	45.597	0.80767	46.362	46.048	46.855	0.76519					51	15	4	0	0	0	0.036848	1	17002	17002		151.48	99.85	1	25876000			36855	14724	26953	27174	35875	35875					-0.027518009444293057
NEVYFIMEP	9	Unmodified	_NEVYFIMEP_					0	0	0			REV__COL6A6|p.V775I|1|0.46|ENSG00000206384|chr3:130568526-130568526|G/A|missense_variant	REV__COL6A6|p.V775I|1|0.46|ENSG00000206384|chr3:130568526-130568526|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	572.2300415039062	2	571.26535	1140.51615	-0.28313	-0.00016174	1.8014	0.0010291	1.5182	0.00086731	571.2633486643198	31.424	1.3708	31.424	30.653	32.024	0					78	26	4	0	0	0	0.46038	1	9914	9914		21.747	0	1	19956000	+		36856	15834	26954	27175	35876	35876					-0.04849029248202896
NEVYGKESY	9	Unmodified	_NEVYGKESY_					0	0	0		nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6;ENST00000472054.2_1_6:142738255-142764649:+|nuORF	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	MULTI-SECPEP	A375_MHC_IP_R1	1	545.1478271484375	2	544.748379	1087.4822	-0.65164	-0.00035498	-0.1521	-8.2858E-05	-0.80374	-0.00043784	544.7481440235329	25.536	0.56127	25.536	25.255	25.816	0					24	10	4	0	0	0	0.027055	1	7470	7470		100.71	32.628	1	13431000			36857	3085	26955	27176	35877	35877					-0.05803734415599138
NEVYGKESY	9	Unmodified	_NEVYGKESY_					0	0	0		nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6;ENST00000472054.2_1_6:142738255-142764649:+|nuORF	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	MULTI-MSMS	A375_MHC_IP_R2	2	545.14794921875	2	544.748379	1087.4822	-1.2324	-0.00067137	0.12139	6.6125E-05	-1.1111	-0.00060525	544.7483559975041	25.05	0.51181	25.693	25.516	26.028	0.64368					21	9	3	0	0	0	0.0024528	1	8329	8329		139.78	85.008	1	16363000			36858	3085	26955	27176	35878	35878					-0.05803734415599138
NEVYRRTF	8	Unmodified	_NEVYRRTF_					0	0	0			REV__nc|ENSG00000073417|O60658-6|PDE8A	REV__nc|ENSG00000073417|O60658-6|PDE8A	MULTI-SECPEP	A375_MHC_IP_R1	1	542.166748046875	2	542.780348	1083.54614	-0.59669	-0.00032387	1.1091	0.00060201	0.51244	0.00027814	543.282425914842	50.275	0.40953	50.275	50.049	50.459	0					11	7	2	0	0	0	0.73563	1	17771	17771		28.487	10.34	1	1004000	+		36859	16619	26956	27177	35879	35879					0.0077109053199819755
NEWCYCFQRQQ	11	Unmodified	_NEWCYCFQRQQ_					0	0	0		nc|ENSG00000196104|Q9BQ16-9|SPOCK3;nc|ENSG00000196104|Q9BQ16-7|SPOCK3;nc|ENSG00000196104|Q9BQ16-2|SPOCK3;nc|ENSG00000196104|Q9BQ16-5|SPOCK3;nc|ENSG00000196104|Q9BQ16-6|SPOCK3;nc|ENSG00000196104|Q9BQ16-4|SPOCK3;nc|ENSG00000196104|Q9BQ16-8|SPOCK3;ENSG00000196104|ENST00000357545|SPOCK3;nc|ENSG00000196104|Q9BQ16|SPOCK3	nc|ENSG00000196104|Q9BQ16-9|SPOCK3	nc|ENSG00000196104|Q9BQ16-9|SPOCK3	MSMS	A375_MHC_IP_R2	2	752.8060302734375	2	752.808453	1503.60235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.812	1	63.555	63.055	64.055	0.74263								0	0	0	0.16307	1	23812	23812		2.7352	1.2533	1				36860	8996	26957	27178	35880	35880					-0.12930392685166225
NEWFTEYT	8	Unmodified	_NEWFTEYT_					0	0	0		ENST00000586758.1_1_18:13140116-13140272:-|nuORF	ENST00000586758.1_1_18:13140116-13140272:-|nuORF	ENST00000586758.1_1_18:13140116-13140272:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	544.6919555664062	2	545.229822	1088.44509	-1.133	-0.00061775	-4.3204	-0.0023556	-5.4534	-0.0029734	545.2279713371419	33.351	0.20396	34.103	33.992	34.196	0.75225					5	3	2	0	0	0	0.972	1	11945	11945		4.756	0	1	718490			36861	13734	26958	27179	35881	35881					-0.09559405961385892
NEWKDLLL	8	Unmodified	_NEWKDLLL_					0	0	0			REV__nc|ENSG00000139908|Q6SA08-3|TSSK4	REV__nc|ENSG00000139908|Q6SA08-3|TSSK4	MULTI-SECPEP	A375_MHC_IP_R1	1	515.232177734375	2	515.782025	1029.5495	-0.50426	-0.00026009	-0.34547	-0.00017819	-0.84974	-0.00043828	515.7818342853591	59.696	0.50795	59.696	59.346	59.854	0					13	9	2	0	0	0	0.93661	1	21376	21376		10.824	0	1	1656100	+		36862	27259	26959	27180	35882	35882					0.035903405860153725
NEWKFKIM	8	Unmodified	_NEWKFKIM_					0	0	0			REV__ENSG00000166035|ENST00000299022|LIPC	REV__ENSG00000166035|ENST00000299022|LIPC	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6867065429688	2	548.28642	1094.55829	-0.87822	-0.00048152	1.6486	0.00090392	0.77041	0.00042241	548.2872633810024	44.602	0.61201	45.371	45.138	45.75	0.76909					22	11	3	0	0	0	0.972	1	16654	16654		7.9102	7.9102	1	4323500	+		36863	20648	26960	27181	35883	35883					0.014789909508181154
NEWKFKIM	8	Unmodified	_NEWKFKIM_					0	0	0			REV__ENSG00000166035|ENST00000299022|LIPC	REV__ENSG00000166035|ENST00000299022|LIPC	MULTI-MATCH	A375_MHC_IP_R1	1		2	548.28642	1094.55829	-0.22592	-0.00012387	1.5873	0.00087027	1.3613	0.00074641	548.2870890121612	45.379	0.5045	45.379	45.132	45.636	0	0.0036497	-2.1325E-05	NaN	7.9102	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4686500	+		36864	20648	26960	27181							0.014789909508181154
NEWSNDEKL	9	Unmodified	_NEWSNDEKL_					0	0	0			REV__ENSG00000172671|ENST00000344646|ZFAND4	REV__ENSG00000172671|ENST00000344646|ZFAND4	MSMS	A375_MHC_IP_R1	1	567.7130737304688	2	567.756735	1133.49892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.022	1	85.022	84.522	85.522	0								0	0	0	0.15283	1	31155	31155		16.942	7.5949	1		+		36865	21162	26961	27182	35884	35884					-0.06249233529661069
NEYENGEFSF	10	Unmodified	_NEYENGEFSF_					0	0	0		ENSG00000107890|ENST00000376087|ANKRD26;nc|ENSG00000107890|Q9UPS8-2|ANKRD26	ENSG00000107890|ENST00000376087|ANKRD26	ENSG00000107890|ENST00000376087|ANKRD26	MULTI-MSMS	A375_MHC_IP_R1	1	618.64599609375	2	618.2462	1234.47785	-0.20543	-0.00012701	-0.11831	-7.3146E-05	-0.32374	-0.00020015	618.2459484565167	47.794	0.45319	47.794	47.567	48.02	0					20	8	3	0	0	0	0.70012	1	16838	16838		12.241	2.1667	1	3218500			36866	2767	26962	27183	35885	35885					-0.13001243629173587
NEYESRSLW	9	Unmodified	_NEYESRSLW_					0	0	0		nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9;nc|ENSG00000117859|Q96SU4-3|OSBPL9;nc|ENSG00000117859|Q96SU4-5|OSBPL9;nc|ENSG00000117859|Q96SU4-4|OSBPL9	nc|ENSG00000117859|Q96SU4-7|OSBPL9	nc|ENSG00000117859|Q96SU4-7|OSBPL9	MULTI-SECPEP	A375_MHC_IP_R1	1	592.67236328125	2	592.272552	1182.53055	-0.2454	-0.00014534	0.050104	2.9675E-05	-0.1953	-0.00011567	592.2726150421349	56.117	0.75814	56.117	55.841	56.599	0					29	14	3	0	0	0	0.10362	1	20077	20077		55.503	19.376	1	10018000			36867	3514	26963	27184	35886	35886					-0.053412407757150504
NEYESRSLW	9	Unmodified	_NEYESRSLW_					0	0	0		nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9;nc|ENSG00000117859|Q96SU4-3|OSBPL9;nc|ENSG00000117859|Q96SU4-5|OSBPL9;nc|ENSG00000117859|Q96SU4-4|OSBPL9	nc|ENSG00000117859|Q96SU4-7|OSBPL9	nc|ENSG00000117859|Q96SU4-7|OSBPL9	MULTI-MSMS	A375_MHC_IP_R2	2	592.672607421875	2	592.272552	1182.53055	-0.65535	-0.00038815	-0.022415	-1.3276E-05	-0.67777	-0.00040142	592.2727250527205	55.426	0.50711	56.177	55.881	56.388	0.75075					23	9	3	0	0	0	0.0096822	1	20905	20905		110.55	47.98	1	9011000			36868	3514	26963	27184	35887	35887					-0.053412407757150504
NEYHQVHVVIN	11	Unmodified	_NEYHQVHVVIN_					0	0	0			REV__nc|ENSG00000237515|B4DS77-2|SHISA9	REV__nc|ENSG00000237515|B4DS77-2|SHISA9	MULTI-MSMS	A375_MHC_IP_R2	2	451.6296081542969	3	451.229959	1350.66805	-0.27735	-0.00012515	-0.38147	-0.00017213	-0.65882	-0.00029728	451.22958348263563	73.091	0.56109	73.827	73.53	74.091	0.73541					15	10	2	0	0	0	0.71476	1	27764	27764		8.2864	0	1	1459500	+		36869	22766	26964	27185	35888	35888					0.006740878237224024
NEYLNENVD	9	Unmodified	_NEYLNENVD_					0	0	0		MYO3A|p.D761N|1|0.36|ENSG00000095777|chr10:26143466-26143466|G/A|missense_variant	MYO3A|p.D761N|1|0.36|ENSG00000095777|chr10:26143466-26143466|G/A|missense_variant	MYO3A|p.D761N|1|0.36|ENSG00000095777|chr10:26143466-26143466|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	555.640380859375	2	555.240918	1108.46728	-0.69847	-0.00038782	-0.63908	-0.00035484	-1.3375	-0.00074266	555.2405271838493	88.966	1.0598	89.697	89.331	90.391	0.7318					34	20	3	0	0	0	0.64136	1	33814	33814		12.241	0.60036	1	4136500			36870	14439	26965	27186	35889	35889					-0.08261226283616452
NEYPTPRSY	9	Unmodified	_NEYPTPRSY_					0	0	0		ENSG00000237651|ENST00000432605|C2orf74	ENSG00000237651|ENST00000432605|C2orf74	ENSG00000237651|ENST00000432605|C2orf74	MULTI-MSMS	A375_MHC_IP_R1	1	564.1619873046875	2	563.76182	1125.50909	-0.47	-0.00026497	0.32387	0.00018259	-0.14613	-8.2381E-05	563.7618075115981	31.958	0.96985	31.958	31.565	32.535	0					58	18	4	0	0	0	0.11715	2	10198	10198;10411		47.594	11.088	1	15216000			36871	9759	26966	27187	35890;35891	35890					-0.048646258044072965
NEYPTPRSY	9	Unmodified	_NEYPTPRSY_					0	0	0		ENSG00000237651|ENST00000432605|C2orf74	ENSG00000237651|ENST00000432605|C2orf74	ENSG00000237651|ENST00000432605|C2orf74	MULTI-MSMS	A375_MHC_IP_R2	2	563.7020874023438	2	563.76182	1125.50909	-0.53764	-0.0003031	0.36433	0.0002054	-0.17331	-9.7704E-05	563.7617755853946	31.345	0.9678	32.064	31.618	32.586	0.71857					47	18	3	0	0	0	0.04447	2	11142	10997;11142		66.457	22.005	1	11933000			36872	9759	26966	27187	35892;35893	35893					-0.048646258044072965
NEYSKQKW	8	Unmodified	_NEYSKQKW_					0	0	0			REV__CCDC178|p.H410Y|1|0.84|ENSG00000166960|chr18:33267246-33267246|G/A|missense_variant	REV__CCDC178|p.H410Y|1|0.84|ENSG00000166960|chr18:33267246-33267246|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	543.2393188476562	2	541.766906	1081.51926	-0.61678	-0.00033415	0.084679	4.5876E-05	-0.5321	-0.00028828	541.7669558144052	50.278	0.86627	50.278	49.947	50.814	0					52	16	5	0	0	0	0.77374	1	17731	17731		13.906	0.86358	1	40509000	+		36873	15593	26967	27188	35894	35894					-0.018240180791963212
NEYSSSVLITE	11	Unmodified	_NEYSSSVLITE_					0	0	0			REV__ENSG00000253598|ENST00000518568|SLC10A5	REV__ENSG00000253598|ENST00000518568|SLC10A5	MULTI-SECPEP	A375_MHC_IP_R1	1	621.478515625	2	621.298433	1240.58231	-0.26039	-0.00016178	-0.57655	-0.00035821	-0.83694	-0.00051999	621.2979868526583	71.44	0.4543	71.44	71.211	71.665	0					12	8	2	0	0	0	0.86796	1	25903	25903		10.8	0	1	2718200	+		36874	22855	26968	27189	35895	35895					-0.028355418724459014
NEYVLVHQ	8	Unmodified	_NEYVLVHQ_					0	0	0			REV__NGLY1|p.A354Dfs*14|1|0.54|ENSG00000151092|chr3:25736092-25736092|G/-|frameshift_variant	REV__NGLY1|p.A354Dfs*14|1|0.54|ENSG00000151092|chr3:25736092-25736092|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	501.6561584472656	2	501.256174	1000.49779	-0.37169	-0.00018631	1.0559	0.00052928	0.68421	0.00034296	501.25617156828656	57.612	0.50871	57.612	57.364	57.873	0					31	9	5	0	0	0	0.77515	1	20655	20655		12.532	0	1	3520700	+		36875	27601	26969	27190	35896	35896					-0.0024340310789057185
NEYYDKQI	8	Unmodified	_NEYYDKQI_					0	0	0			REV__tr|U7T101|U7T101_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00756PE=4SV=1	REV__tr|U7T101|U7T101_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00756PE=4SV=1	MSMS	A375_MHC_IP_R2	2	536.7235107421875	2	536.750921	1071.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.593	1	37.364	36.864	37.864	0.7709								0	0	0	0.16876	1	13349	13349		9.3474	1.4373	1		+		36876	28688	26970	27191	35897	35897					-0.04559430552990307
NFAMWLQGWWW	11	Unmodified	_NFAMWLQGWWW_					0	0	0		nc|ENSG00000164808|Q14159-3|SPIDR	nc|ENSG00000164808|Q14159-3|SPIDR	nc|ENSG00000164808|Q14159-3|SPIDR	MULTI-MSMS	A375_MHC_IP_R2	2	763.7485961914062	2	762.847707	1523.68086	-0.96759	-0.00073813	0.41578	0.00031717	-0.55182	-0.00042095	762.8478479922886	107.39	0.50867	108.15	107.84	108.35	0.75436					21	9	3	0	0	0	0.7359	1	40574	40574		3.2813	0.28607	1	2839700			36877	14734	26971	27192	35898	35898					-0.06003172317764438
NFAMWLQGWWW	11	Unmodified	_NFAMWLQGWWW_					0	0	0		nc|ENSG00000164808|Q14159-3|SPIDR	nc|ENSG00000164808|Q14159-3|SPIDR	nc|ENSG00000164808|Q14159-3|SPIDR	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	762.847707	1523.68086	-0.96759	-0.00073813	0.41578	0.00031717	-0.55182	-0.00042095	762.8478479922886	107.39	0.50867	108.15	107.84	108.35	0.75436	0.071618	-0.00010385	NaN	3.2813	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2839700			36878	14734	26971	27192							-0.06003172317764438
NFCCCLCCC	9	Unmodified	_NFCCCLCCC_					0	0	0			REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	MULTI-MSMS	A375_MHC_IP_R2	2	506.5379333496094	2	506.137815	1010.26108	-0.537	-0.0002718	1.6851	0.0008529	1.1481	0.0005811	506.1380848722073	141.75	0.30463	141.78	141.62	141.92	0.030746					9	5	3	0	0	0	0.77827	1	55442	55442		0	0	1	644820	+		36879	17145	26972	27193	35899	35899					-0.24364319847268234
NFCCCLCCC	9	Unmodified	_NFCCCLCCC_					0	0	0			REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	MULTI-SECPEP	A375_MHC_IP_R2	2	505.712158203125	2	506.137815	1010.26108	-0.537	-0.0002718	1.6851	0.0008529	1.1481	0.0005811	506.1380848722073	141.75	0.30463	141.78	141.62	141.92	0.030746					9	5	3	0	0	0	0.81896	1	55458	55458		0	0	1	644820	+		36880	17145	26972	27193	35900	35900					-0.24364319847268234
NFCCNLRIL	9	Unmodified	_NFCCNLRIL_					0	0	0		ENST00000504307.1_2_17:48249464-48258440:-|nuORF	ENST00000504307.1_2_17:48249464-48258440:-|nuORF	ENST00000504307.1_2_17:48249464-48258440:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	366.6095886230469	3	365.852778	1094.53651	0.078591	2.8753E-05	-1.3728	-0.00050223	-1.2942	-0.00047348	365.85236924456774	76.143	0.50624	76.884	76.64	77.146	0.74052					13	9	2	0	0	0	0.77834	1	28953	28953		5.2969	2.7984	1	1158200			36881	12818	26973	27194	35901	35901					-0.006981370693893041
NFDGNEVREYH	11	Unmodified	_NFDGNEVREYH_					0	0	0			REV__nc|ENSG00000079335|Q9UNH5-3|CDC14A	REV__nc|ENSG00000079335|Q9UNH5-3|CDC14A	MULTI-MSMS	A375_MHC_IP_R1	1	690.7018432617188	2	690.302372	1378.59019	-0.37962	-0.00026205	0.029977	2.0694E-05	-0.34964	-0.00024136	690.3023116739793	42.989	0.45761	42.989	42.739	43.197	0					22	8	3	0	0	0	0.71476	1	14951	14951		14.405	2.1647	1	2495600	+		36882	16730	26974	27195	35902	35902					-0.08395969832304218
NFDRAIEEF	9	Unmodified	_NFDRAIEEF_					0	0	0			REV__ENSG00000167986|ENST00000301764|DDB1	REV__ENSG00000167986|ENST00000301764|DDB1	MULTI-SECPEP	A375_MHC_IP_R1	1	381.5833740234375	3	380.848856	1139.52474	0.43168	0.00016441	-0.04107	-1.5642E-05	0.39061	0.00014876	380.84877420426415	40.663	0.45502	40.663	40.458	40.913	0					15	8	2	0	0	0	0.74412	1	14005	14005		10.151	5.6217	1	5521700	+		36883	20811	26975	27196	35903	35903					-0.03944339287409093
NFDRAIEEF	9	Unmodified	_NFDRAIEEF_					0	0	0			REV__ENSG00000167986|ENST00000301764|DDB1	REV__ENSG00000167986|ENST00000301764|DDB1	MULTI-SECPEP	A375_MHC_IP_R2	2	381.2490539550781	3	380.848856	1139.52474	-0.056429	-2.1491E-05	0.16743	6.3765E-05	0.111	4.2274E-05	380.8488415125689	39.972	0.40633	40.747	40.473	40.879	0.77451					12	7	2	0	0	0	0.74412	1	14780	14780		10.151	4.3671	1	3896500	+		36884	20811	26975	27196	35904	35904					-0.03944339287409093
NFFNDKRRPFR	11	Unmodified	_NFFNDKRRPFR_					0	0	0		nc|ENSG00000111696|Q86UY8-2|NT5DC3;ENSG00000111696|ENST00000392876|NT5DC3	nc|ENSG00000111696|Q86UY8-2|NT5DC3	nc|ENSG00000111696|Q86UY8-2|NT5DC3	MULTI-MSMS	A375_MHC_IP_R2	2	749.2936401367188	2	748.897109	1495.77966	-0.68309	-0.00051157	-3.3226	-0.0024883	-4.0057	-0.0029999	749.3959612347135	137.17	0.36043	137.26	137.16	137.52	0.097458					8	6	2	0	0	0	0.73135	1	53857	53857		7.609	1.4171	1	3547000			36885	3019	26976	27197	35905	35905					0.05160566971494518
NFGSRPFAY	9	Unmodified	_NFGSRPFAY_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;ENST00000550968.5_1_12:112641421-112665930:-|nuORF	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MSMS	A375_MHC_IP_R1	1	529.734130859375	2	529.756341	1057.49813	-0.61294	-0.00032471	0.63802	0.00033799	0.025081	1.3287E-05	529.7563110963652	58.246	0.50699	58.246	57.974	58.481	0					22	9	3	0	0	0	0.22013	1	20978	20978		36.506	14.76	1	3372400			36886	7762	26977	27198	35906	35906					-0.028319833880459555
NFHWRDWTY	9	Unmodified	_NFHWRDWTY_					0	0	0		ENSG00000132763|ENST00000401061|MMACHC	ENSG00000132763|ENST00000401061|MMACHC	ENSG00000132763|ENST00000401061|MMACHC	MULTI-MSMS	A375_MHC_IP_R1	1	442.5998229980469	3	442.200111	1323.5785	-0.14009	-6.1948E-05	0.15829	6.9995E-05	0.018197	8.0467E-06	442.2001104145181	76.217	1.3693	76.217	75.815	77.184	0					43	26	4	0	0	0	0.28079	1	27753	27753		32.037	32.037	1	2909300			36887	4446	26978	27199	35907	35907					-0.07034122065010706
NFHWRDWTY	9	Unmodified	_NFHWRDWTY_					0	0	0		ENSG00000132763|ENST00000401061|MMACHC	ENSG00000132763|ENST00000401061|MMACHC	ENSG00000132763|ENST00000401061|MMACHC	MULTI-MSMS	A375_MHC_IP_R1	1	663.1966552734375	2	662.796529	1323.5785	-0.58047	-0.00038473	0.4751	0.00031489	-0.10537	-6.9838E-05	662.7971098476238	76.143	0.45458	76.143	75.966	76.421	0					12	8	2	0	0	0	0.41524	1	27785	27785		30.703	11.341	1	1793700			36888	4446	26978	27199	35908	35908					-0.07034122065010706
NFHWRDWTY	9	Unmodified	_NFHWRDWTY_					0	0	0		ENSG00000132763|ENST00000401061|MMACHC	ENSG00000132763|ENST00000401061|MMACHC	ENSG00000132763|ENST00000401061|MMACHC	MULTI-MSMS	A375_MHC_IP_R2	2	442.59991455078125	3	442.200111	1323.5785	-0.35803	-0.00015832	-0.17851	-7.8938E-05	-0.53655	-0.00023726	442.19998732351405	75.523	1.1195	76.263	75.976	77.095	0.74052					33	21	3	0	0	0	0.13728	1	28672	28672		43.982	43.982	1	3858600			36889	4446	26978	27199	35909	35909					-0.07034122065010706
NFHWRDWTY	9	Unmodified	_NFHWRDWTY_					0	0	0		ENSG00000132763|ENST00000401061|MMACHC	ENSG00000132763|ENST00000401061|MMACHC	ENSG00000132763|ENST00000401061|MMACHC	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	662.796529	1323.5785	-0.87517	-0.00058006	0.62015	0.00041103	-0.25502	-0.00016903	662.7967543612582	75.578	0.5115	76.319	75.976	76.487	0.74052	0.087656	0.00013464	NaN	30.703	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1440200			36890	4446	26978	27199							-0.07034122065010706
NFINPTVVEQ	10	Unmodified	_NFINPTVVEQ_					0	0	0			REV__ENST00000504698.1_1_5:33456142-33459991:+|nuORF	REV__ENST00000504698.1_1_5:33456142-33459991:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	387.4175109863281	3	387.536389	1159.58734	-0.56014	-0.00021708	0.5769	0.00022357	0.016753	6.4923E-06	387.5366141700529	36.655	0.30631	37.425	37.258	37.564	0.7709					8	5	2	0	0	0	0.94227	1	13372	13372		2.8433	0.59056	1	1427300	+		36891	17779	26979	27200	35910	35910					0.013928067808137712
NFKAFPMEL	9	Unmodified	_NFKAFPMEL_					0	0	0		ENSG00000178538|ENST00000317995|CA8	ENSG00000178538|ENST00000317995|CA8	ENSG00000178538|ENST00000317995|CA8	MULTI-MSMS	A375_MHC_IP_R2	2	548.6951293945312	2	548.778428	1095.5423	-0.65686	-0.00036047	0.41413	0.00022727	-0.24273	-0.0001332	548.7784137258122	85.04	1.2207	85.776	85.069	86.29	0.73601					34	23	2	0	0	0	0.05754	1	32399	32399		61.357	15.337	1	1393300			36892	8164	26980	27201	35911	35911					-0.0016471528606416541
NFKGFDLTSY	10	Unmodified	_NFKGFDLTSY_					0	0	0			REV__nc|ENSG00000130653|Q6ZV29-3|PNPLA7	REV__nc|ENSG00000130653|Q6ZV29-3|PNPLA7	MULTI-MSMS	A375_MHC_IP_R2	2	597.8545532226562	2	596.287671	1190.56079	-0.49448	-0.00029485	0.43645	0.00026025	-0.05803	-3.4602E-05	596.2877232887064	63.883	0.71243	64.623	64.241	64.954	0.74022					42	13	4	0	0	0	0.70329	1	24176	24176		10.824	0	1	20193000	+		36893	18551	26981	27202	35912	35912					-0.026868821105381357
NFKTPRGPV	9	Unmodified	_NFKTPRGPV_					0	0	0		ENSG00000182774|ENST00000647841|RPS17;ENST00000558397.1_1_15:83205554-83206687:-|nuORF;ENST00000561157.5_1_15:83205554-83205662:-|nuORF;ENST00000561068.5_3_15:83205554-83208094:-|nuORF	ENSG00000182774|ENST00000647841|RPS17	ENSG00000182774|ENST00000647841|RPS17	MULTI-SECPEP	A375_MHC_IP_R1	1	508.6874084472656	2	508.287808	1014.56106	-0.48239	-0.0002452	-1.13	-0.00057435	-1.6124	-0.00081955	508.2870535366253	27.43	0.50527	27.43	27.179	27.684	0					17	9	2	0	0	0	0.056023	1	8304	8304		57.722	19.748	1	3907900			36894	8436	26982	27203	35913	35913					0.05436582399988765
NFKTPRGPV	9	Unmodified	_NFKTPRGPV_					0	0	0		ENSG00000182774|ENST00000647841|RPS17;ENST00000558397.1_1_15:83205554-83206687:-|nuORF;ENST00000561157.5_1_15:83205554-83205662:-|nuORF;ENST00000561068.5_3_15:83205554-83208094:-|nuORF	ENSG00000182774|ENST00000647841|RPS17	ENSG00000182774|ENST00000647841|RPS17	MULTI-SECPEP	A375_MHC_IP_R2	2	508.6869201660156	2	508.287808	1014.56106	-1.0247	-0.00052084	-0.37278	-0.00018948	-1.3975	-0.00071032	508.2874868660445	26.78	0.56247	27.44	27.109	27.671	0.65992					23	10	3	0	0	0	0.10103	1	9084	9084		62.573	28.47	1	5281300			36895	8436	26982	27203	35914	35914					0.05436582399988765
NFKWYEKAKYF	11	Unmodified	_NFKWYEKAKYF_					0	0	0			REV__MMP16|p.G504A|1|0.39|ENSG00000156103|chr8:88041774-88041774|C/G|missense_variant	REV__MMP16|p.G504A|1|0.39|ENSG00000156103|chr8:88041774-88041774|C/G|missense_variant	MSMS	A375_MHC_IP_R1	1	508.6874084472656	3	508.594238	1522.76089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.394	1	27.394	26.894	27.894	0								0	0	0	0.16203	1	8304	8304		4.1166	3.1031	1		+		36896	27025	26983	27204	35915	35915					0.020415925570659965
NFLCYVLLIW	10	Unmodified	_NFLCYVLLIW_					0	0	0		MTNR1A|p.S144F|1|0.38|ENSG00000168412|chr4:186534311-186534311|G/A|missense_variant	MTNR1A|p.S144F|1|0.38|ENSG00000168412|chr4:186534311-186534311|G/A|missense_variant	MTNR1A|p.S144F|1|0.38|ENSG00000168412|chr4:186534311-186534311|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	428.6487121582031	3	428.566744	1282.6784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.315	1	52.067	51.567	52.567	0.75225								0	0	0	0.15508	1	19309	19309		2.086	0.17963	1				36897	14415	26984	27205	35916	35916					0.04836979224592142
NFLGETVLVE	10	Unmodified	_NFLGETVLVE_					0	0	0		DNAH9|p.S4145Ffs*44|1|0.38|ENSG00000007174|chr17:11934016-11934016|C/-|frameshift_variant;nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9	DNAH9|p.S4145Ffs*44|1|0.38|ENSG00000007174|chr17:11934016-11934016|C/-|frameshift_variant	DNAH9|p.S4145Ffs*44|1|0.38|ENSG00000007174|chr17:11934016-11934016|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	560.7220458984375	2	560.797872	1119.58119	-0.44916	-0.00025189	-0.13591	-7.6217E-05	-0.58507	-0.00032811	560.7977356064265	128.66	0.3062	128.66	128.58	128.89	0					7	5	2	0	0	0	0.70012	1	49527	49527		12.241	0.60036	1	4666800			36898	776	26985	27206	35917	35917					0.02618288549274439
NFLKGCVNCEY	11	Unmodified	_NFLKGCVNCEY_					0	0	0			REV__ENSG00000146587|ENST00000396912|RBAK	REV__ENSG00000146587|ENST00000396912|RBAK	MSMS	A375_MHC_IP_R1	1	645.31298828125	2	645.286291	1288.55803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.9	1	149.9	149.4	150.4	0								0	0	0	0.16337	1	57184	57184		1.1933	0.59184	1		+		36899	19544	26986	27207	35918	35918					-0.07470796831353255
NFLKGCVNCEY	11	Unmodified	_NFLKGCVNCEY_					0	0	0			REV__ENSG00000146587|ENST00000396912|RBAK	REV__ENSG00000146587|ENST00000396912|RBAK	MSMS	A375_MHC_IP_R2	2	645.3133544921875	2	645.286291	1288.55803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.43	1	149.44	148.94	149.94	0.01825								0	0	0	0.16337	1	57996	57996		1.1933	0.59184	1		+		36900	19544	26986	27207	35919	35919					-0.07470796831353255
NFLKKTRFCER	11	Unmodified	_NFLKKTRFCER_					0	0	0			REV__EEF2K|p.S153F|1|0.44|ENSG00000103319|chr16:22251162-22251162|C/T|missense_variant	REV__EEF2K|p.S153F|1|0.44|ENSG00000103319|chr16:22251162-22251162|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	722.2930908203125	2	721.390271	1440.76599	-0.7177	-0.00051774	1.1279	0.00081364	0.41017	0.00029589	721.3906095667879	132.85	0.7115	133.02	132.64	133.35	0.16487					34	13	3	0	0	0	0.73891	1	52196	52196		1.1933	0	1	7479000	+		36901	16063	26987	27208	35920	35920					0.06323573148029027
NFLLKTGSI	9	Unmodified	_NFLLKTGSI_					0	0	0		L1MB4_dup3225|chr7:20663211-20663687:+|1.1155096630173194|0.0508094464944072|4.46|407.0|35|3|anti-sense	L1MB4_dup3225|chr7:20663211-20663687:+|1.1155096630173194|0.0508094464944072|4.46|407.0|35|3|anti-sense	L1MB4_dup3225|chr7:20663211-20663687:+|1.1155096630173194|0.0508094464944072|4.46|407.0|35|3|anti-sense	MULTI-SECPEP	A375_MHC_IP_R2	2	497.192138671875	2	496.792392	991.570232	-0.43179	-0.00021451	0.031336	1.5567E-05	-0.40046	-0.00019895	496.79237216958046	63.222	0.30323	63.964	63.788	64.091	0.74263					10	5	2	0	0	0	0.38578	1	24001	24001		41.84	0	1	1508900			36902	14256	26988	27209	35921	35921					0.07410930965670559
NFLLKTGSI	9	Unmodified	_NFLLKTGSI_					0	0	0		L1MB4_dup3225|chr7:20663211-20663687:+|1.1155096630173194|0.0508094464944072|4.46|407.0|35|3|anti-sense	L1MB4_dup3225|chr7:20663211-20663687:+|1.1155096630173194|0.0508094464944072|4.46|407.0|35|3|anti-sense	L1MB4_dup3225|chr7:20663211-20663687:+|1.1155096630173194|0.0508094464944072|4.46|407.0|35|3|anti-sense	MULTI-MATCH	A375_MHC_IP_R1	1		2	496.792392	991.570232	-0.39534	-0.0001964	-0.28161	-0.0001399	-0.67695	-0.0003363	496.7922420026088	64.093	0.40512	64.093	63.887	64.292	0	0.064643	-0.0002115	NaN	41.84	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	834640			36903	14256	26988	27209							0.07410930965670559
NFLQPVWFMFF	11	Unmodified	_NFLQPVWFMFF_					0	0	0			REV__ENST00000395505.6_1_9:95608217-95608430:-|nuORF	REV__ENST00000395505.6_1_9:95608217-95608430:-|nuORF	MSMS	A375_MHC_IP_R1	1	492.4777526855469	3	492.577531	1474.71076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.936	1	42.936	42.436	43.436	0								0	0	0	0.16297	1	14901	14901		1.3296	0	1		+		36904	24324	26989	27210	35922	35922					-0.007602333724435084
NFLRGKLKLY	10	Unmodified	_NFLRGKLKLY_					0	0	0		ENSG00000130427|ENST00000252723|EPO	ENSG00000130427|ENST00000252723|EPO	ENSG00000130427|ENST00000252723|EPO	MULTI-SECPEP	A375_MHC_IP_R2	2	625.7528076171875	2	626.38224	1250.74993	-0.70582	-0.00044212	-3.4648	-0.0021703	-4.1706	-0.0026124	626.3804410574506	134.31	0.3069	134.44	134.29	134.6	0.13901					8	5	2	0	0	0	0.94587	1	52859	52859		0.40072	0	1	895030			36905	4243	26990	27211	35923	35923					0.1345823497345009
NFLSFVVFIVF	11	Unmodified	_NFLSFVVFIVF_					0	0	0		tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	666.7710571289062	2	666.373549	1330.73255	-0.78894	-0.00052573	-1.1362	-0.00075715	-1.9252	-0.0012829	666.3725575826082	130.79	1.0688	130.79	130.11	131.18	0					36	20	2	0	0	0	0.72728	1	50418	50418		11.495	3.8858	1	41668000			36906	29803	26991	27212	35924	35924					0.08040894647797359
NFLSFVVFIVF	11	Unmodified	_NFLSFVVFIVF_					0	0	0		tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	666.7730712890625	2	666.373549	1330.73255	-0.80463	-0.00053619	-0.48702	-0.00032454	-1.2917	-0.00086072	666.3730985373531	131.7	2.1785	131.7	131.13	133.3	0					82	42	2	0	0	0	0.73135	2	50665	50665;50899		7.609	3.6646	1	88708000			36907	29803	26991	27212	35925;35926	35925					0.08040894647797359
NFLSFVVFIVF	11	Unmodified	_NFLSFVVFIVF_					0	0	0		tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	666.7730712890625	2	666.373549	1330.73255	-0.82488	-0.00054968	-0.54891	-0.00036578	-1.3738	-0.00091546	666.3726658134814	130.58	1.2175	130.79	130.1	131.31	0.21419					61	23	3	0	0	0	0.73135	2	51119	51119;51371		7.609	3.4194	1	36187000			36908	29803	26991	27212	35927;35928	35927					0.08040894647797359
NFLSFVVFIVF	11	Unmodified	_NFLSFVVFIVF_					0	0	0		tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	666.7724609375	2	666.373549	1330.73255	-0.78911	-0.00052584	0.38351	0.00025556	-0.4056	-0.00027028	666.3732923472639	131.58	2.4408	131.77	130.93	133.37	0.18954					157	47	5	0	0	0	0.73135	3	51627	51627;51917;51958		7.609	4.6137	1	86943000			36909	29803	26991	27212	35929;35930;35931	35929					0.08040894647797359
NFLSFVVFIVF	11	Unmodified	_NFLSFVVFIVF_					0	0	0		tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	444.9844970703125	3	444.584792	1330.73255	-0.35113	-0.0001561	0.1578	7.0157E-05	-0.19332	-8.5948E-05	444.5845690544628	131.61	2.4408	131.79	130.88	133.32	0.18953					123	47	4	0	0	0	0.73459	1	51801	51801		2.084	0.62885	1	29221000			36910	29803	26991	27212	35932	35932					0.08040894647797359
NFLSFVVFIVF	11	Unmodified	_NFLSFVVFIVF_					0	0	0		tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	666.373549	1330.73255	-0.80463	-0.00053619	-0.48702	-0.00032454	-1.2917	-0.00086072	666.3730985373531	131.7	2.1785	131.7	131.13	133.3	0	-0.033459	-0.00039203	NaN	7.609	82	42	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88708000			36911	29803	26991	27212							0.08040894647797359
NFLVTKKTI	9	Unmodified	_NFLVTKKTI_					0	0	0		nc|ENSG00000254658|Q8NGG1|OR8J2	nc|ENSG00000254658|Q8NGG1|OR8J2	nc|ENSG00000254658|Q8NGG1|OR8J2	MULTI-SECPEP	A375_MHC_IP_R2	2	532.1637573242188	2	532.329142	1062.64373	-1.0167	-0.00054124	-0.28582	-0.00015215	-1.3026	-0.00069339	532.8306340710145	61.241	0.40351	61.986	61.769	62.172	0.74503					14	7	3	0	0	0	0.49205	1	23228	23228		27.629	10.516	1	1384700			36912	14923	26992	27213	35933	35933					0.11491479408141458
NFMTHPEF	8	Unmodified	_NFMTHPEF_					0	0	0		nc|ENSG00000070961|P20020-6|ATP2B1;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000070961|P20020-4|ATP2B1;nc|ENSG00000070961|P20020-1|ATP2B1;ENST00000359142.7_1_12:89984763-89992387:-|nuORF	nc|ENSG00000070961|P20020-6|ATP2B1	nc|ENSG00000070961|P20020-6|ATP2B1	MULTI-MSMS	A375_MHC_IP_R1	1	511.68133544921875	2	511.723652	1021.43275	-0.76014	-0.00038898	0.3375	0.00017271	-0.42264	-0.00021627	512.2252474456183	67.248	0.71552	67.248	66.785	67.5	0					21	13	2	0	0	0	0.74466	1	24279	24279		21.747	4.8044	1	677280			36913	1505	26993	27214	35934	35934					-0.07710720905413382
NFMTHPEF	8	Unmodified	_NFMTHPEF_					0	0	0		nc|ENSG00000070961|P20020-6|ATP2B1;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000070961|P20020-4|ATP2B1;nc|ENSG00000070961|P20020-1|ATP2B1;ENST00000359142.7_1_12:89984763-89992387:-|nuORF	nc|ENSG00000070961|P20020-6|ATP2B1	nc|ENSG00000070961|P20020-6|ATP2B1	MULTI-MATCH	A375_MHC_IP_R2	2		2	511.723652	1021.43275	-0.93098	-0.0004764	-0.84575	-0.00043279	-1.7767	-0.0009092	512.2252689071112	66.213	0.66504	66.951	66.475	67.14	0.73812	-0.14806	-0.0010009	NaN	21.747	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1053600			36914	1505	26993	27214							-0.07710720905413382
NFNDGPATW	9	Unmodified	_NFNDGPATW_					0	0	0			REV__CLCA4|p.D782N|1|0.17|ENSG00000016602|chr1:86579575-86579575|G/A|missense_variant	REV__CLCA4|p.D782N|1|0.17|ENSG00000016602|chr1:86579575-86579575|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	511.1802673339844	2	511.222331	1020.43011	-0.67551	-0.00034534	-0.095334	-4.8737E-05	-0.77085	-0.00039407	511.22216140378765	88.965	0.55463	89.697	89.381	89.936	0.7318					16	10	2	0	0	0	0.6656	1	33775	33775		10.074	0	1	625180	+		36915	15796	26994	27215	35935	35935					-0.07928853038720263
NFPQLLEHKAC	11	Unmodified	_NFPQLLEHKAC_					0	0	0			REV__ENST00000552266.1_1_12:56504682-56504898:+|nuORF	REV__ENST00000552266.1_1_12:56504682-56504898:+|nuORF	MSMS	A375_MHC_IP_R2	2	433.73095703125	3	433.888657	1298.64414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.2955	1	6.7106	6.2106	7.2106	0.4151								0	0	0	0.16354	1	2005	2005		0.08335	0	1		+		36916	20999	26995	27216	35936	35936					0.006765310656874135
NFPQLLEHKAC	11	Unmodified	_NFPQLLEHKAC_					0	0	0			REV__ENST00000552266.1_1_12:56504682-56504898:+|nuORF	REV__ENST00000552266.1_1_12:56504682-56504898:+|nuORF	MSMS	A375_MHC_IP_R2	2	433.6902160644531	3	433.888657	1298.64414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.715	1	16.302	15.802	16.802	0.58774								0	0	0	0.16354	1	4681	4681		0.08335	0	1		+		36917	20999	26995	27216	35937	35937					0.006765310656874135
NFQPRISY	8	Unmodified	_NFQPRISY_					0	0	0		nc|ENSG1000|Q9UN81|L1_ORF1	nc|ENSG1000|Q9UN81|L1_ORF1	nc|ENSG1000|Q9UN81|L1_ORF1	MULTI-SECPEP	A375_MHC_IP_R1	1	513.1639404296875	2	512.764166	1023.51378	-0.35974	-0.00018446	0.13323	6.8317E-05	-0.22651	-0.00011615	512.7641552687542	53.732	0.55817	53.732	53.505	54.063	0					18	10	2	0	0	0	0.24136	1	19160	19160		85.642	56.56	1	11677000			36918	14966	26996	27217	35938	35938					0.0029630312900508216
NFQPRISY	8	Unmodified	_NFQPRISY_					0	0	0		nc|ENSG1000|Q9UN81|L1_ORF1	nc|ENSG1000|Q9UN81|L1_ORF1	nc|ENSG1000|Q9UN81|L1_ORF1	MULTI-SECPEP	A375_MHC_IP_R2	2	513.1636352539062	2	512.764166	1023.51378	-1.315	-0.0006743	-0.090751	-4.6534E-05	-1.4058	-0.00072084	512.7642170704512	53.07	0.71173	53.821	53.436	54.147	0.75105					30	13	3	0	0	0	0.095167	1	19995	19995		118.89	68.04	1	9655700			36919	14966	26996	27217	35939	35939					0.0029630312900508216
NFRDCGQW	8	Unmodified	_NFRDCGQW_					0	0	0		nc|ENSG00000114248|Q6UY01-2|LRRC31;ENSG00000114248|ENST00000316428|LRRC31	nc|ENSG00000114248|Q6UY01-2|LRRC31	nc|ENSG00000114248|Q6UY01-2|LRRC31	MULTI-MSMS	A375_MHC_IP_R1	1	513.1639404296875	2	513.216526	1024.4185	-0.35035	-0.00017981	-1.7129	-0.00087909	-2.0633	-0.0010589	513.2160032979665	53.857	0.4072	53.857	53.605	54.013	0					12	7	2	0	0	0	0.77123	1	19160	19160		14.582	1.5392	1	1710600			36920	3204	26997	27218	35940	35940					-0.09273373333701329
NFRWYRDEQFF	11	Unmodified	_NFRWYRDEQFF_					0	0	0			REV__ENSG00000102996|ENST00000219271|MMP15	REV__ENSG00000102996|ENST00000219271|MMP15	MSMS	A375_MHC_IP_R2	2	536.634765625	3	536.584513	1606.73171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.909	1	84.649	84.149	85.149	0.73962								0	0	0	0.1635	1	31894	31894		0.50596	0.051438	1		+		36921	17243	26998	27219	35941	35941					-0.04738551739205832
NFSAAFSVNY	10	Unmodified	_NFSAAFSVNY_					0	0	0		ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1;ENST00000472564.1_1_13:113960786-113974926:+|nuORF	ENSG00000185896|ENST00000332556|LAMP1	ENSG00000185896|ENST00000332556|LAMP1	MULTI-MSMS	A375_MHC_IP_R1	1	561.1565551757812	2	560.258914	1118.50327	-0.50689	-0.00028399	-0.50342	-0.00028205	-1.0103	-0.00056603	560.2588459228297	61.35	2.9647	61.35	60.77	63.735	0					152	57	5	0	0	0	0.70496	1	21996	21996		10.074	2.1638	1	65167000			36922	8702	26999	27220	35942	35942					-0.051237243160812795
NFSDAFEV	8	Unmodified	_NFSDAFEV_					0	0	0			REV__nc|ENSG00000132437|P20711-4|DDC	REV__nc|ENSG00000132437|P20711-4|DDC	MULTI-MSMS	A375_MHC_IP_R1	1	465.107177734375	2	464.705983	927.397412	-0.24554	-0.0001141	1.3856	0.00064391	1.1401	0.00052981	464.70697135486836	95.998	0.91193	95.998	95.515	96.427	0					27	17	2	0	0	0	0.7256	1	35306	35306		26.884	3.7352	1	2112700	+		36923	18653	27000	27221	35943	35943					-0.06919060161567359
NFSIKITRC	9	Unmodified	_NFSIKITRC_					0	0	0		ENST00000533089.5_1_1:92149068-92149224:-|nuORF	ENST00000533089.5_1_1:92149068-92149224:-|nuORF	ENST00000533089.5_1_1:92149068-92149224:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	361.5988464355469	3	361.198943	1080.575	0.34034	0.00012293	-0.076205	-2.7525E-05	0.26413	9.5405E-05	361.1988074563302	39.206	0.65929	39.206	38.882	39.541	0					26	12	3	0	0	0	0.74875	1	13373	13373		10.8	4.6077	1	3315700			36924	13192	27001	27222	35944	35944					0.03793491836768226
NFSNLEQILY	10	Unmodified	_NFSNLEQILY_					0	0	0			REV__nc|ENSG00000186231|Q96NJ5-2|KLHL32	REV__nc|ENSG00000186231|Q96NJ5-2|KLHL32	MULTI-MSMS	A375_MHC_IP_R2	2	621.213623046875	2	620.814053	1239.61355	-0.61483	-0.0003817	-0.39306	-0.00024402	-1.0079	-0.00062571	620.8138270936753	69.12	0.60786	69.855	69.474	70.082	0.73511					17	11	2	0	0	0	0.49952	1	26186	26186		39.95	5.548	1	3332700	+		36925	21958	27002	27223	35945	35945					0.0033307595228961873
NFSREFYKH	9	Unmodified	_NFSREFYKH_					0	0	0			REV__ENSG00000173404|ENST00000310227|INSM1	REV__ENSG00000173404|ENST00000310227|INSM1	MSMS	A375_MHC_IP_R1	1	614.3760375976562	2	614.298904	1226.58326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.46	1	118.46	117.96	118.96	0								0	0	0	0.15486	1	43614	43614		10.824	1.4408	1		+		36926	21219	27003	27224	35946	35946					-0.02097237922248496
NFYEINVFVKK	11	Unmodified	_NFYEINVFVKK_					0	0	0		tr|U7SIR8|U7SIR8_FUSNUATP-dependenthelicaseIRC3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02152PE=4SV=1	tr|U7SIR8|U7SIR8_FUSNUATP-dependenthelicaseIRC3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02152PE=4SV=1	tr|U7SIR8|U7SIR8_FUSNUATP-dependenthelicaseIRC3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02152PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	467.6147766113281	3	467.590605	1399.74999	-0.90931	-0.00042518	-0.068043	-3.1816E-05	-0.97735	-0.000457	467.59048924976906	19.191	0.45327	19.794	19.583	20.037	0.60308					14	8	2	0	0	0	0.73698	1	5762	5762		2.2527	0	1	2450700			36927	29431	27004	27225	35947	35947					0.06610190182755105
NFYNIFSKKYK	11	Unmodified	_NFYNIFSKKYK_					0	0	0		tr|U7SNU7|U7SNU7_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01953PE=4SV=1	tr|U7SNU7|U7SNU7_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01953PE=4SV=1	tr|U7SNU7|U7SNU7_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01953PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	726.7858276367188	2	726.387719	1450.76089	-0.50341	-0.00036567	-1.8684	-0.0013572	-2.3718	-0.0017228	726.3859970484452	70.769	0.45915	70.769	70.442	70.902	0					15	8	3	0	0	0	0.7039	1	25700	25700		15.248	7.9593	1	2349000			36928	29563	27005	27226	35948	35948					0.053535925570713516
NGAGGKHC	8	Unmodified	_NGAGGKHC_					0	0	0		ZNF544|p.D209G|1|0.21|ENSG00000198131|chr19:58261232-58261232|A/G|missense_variant	ZNF544|p.D209G|1|0.21|ENSG00000198131|chr19:58261232-58261232|A/G|missense_variant	ZNF544|p.D209G|1|0.21|ENSG00000198131|chr19:58261232-58261232|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	743.7249755859375	1	743.325333	742.318056	-0.88345	-0.00065669	-0.20741	-0.00015417	-1.0909	-0.00081086	743.3249857081596	144.18	0.2648	144.18	143.98	144.25	0					6	5	2	0	0	0	0.77861	1	55302	55302		0	0	1	1664500			36929	30226	27006	27227	35949	35949					-0.06340985596705195
NGAVLHIT	8	Unmodified	_NGAVLHIT_					0	0	0			REV__ENST00000463347.5_1_3:45730948-45748420:+|nuORF	REV__ENST00000463347.5_1_3:45730948-45748420:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	412.62982177734375	2	412.734877	823.455202	0.0003719	1.535E-07	-1.4279	-0.00058935	-1.4275	-0.0005892	412.73190447727916	106.03	2.3913	106.79	105.97	108.36	0.75977					83	46	3	0	0	0	0.7773	1	40424	40424		4.756	0	1	3269600	+		36930	22602	27007	27228	35950	35950					0.03641246554514055
NGDGGGGGA	9	Unmodified	_NGDGGGGGA_					0	0	0		ENST00000513117.1_1_5:6633544-6656205:+|nuORF;ENST00000510531.5_1_5:6633544-6644998:+|nuORF;ENST00000274192.6_2_5:6633463-6652038:+|nuORF	ENST00000513117.1_1_5:6633544-6656205:+|nuORF	ENST00000513117.1_1_5:6633544-6656205:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	661.2652587890625	1	661.253608	660.246331	-0.77531	-0.00051268	1.3887	0.00091826	0.61335	0.00040558	661.2562359128045	90.524	0.35451	91.259	91.058	91.413	0.73451					8	6	2	0	0	0	0.75251	1	34448	34448		2.3027	0	1	806190			36931	10393	27008	27229	35951	35951					-0.09738201749564723
NGDPDRSLY	9	Unmodified	_NGDPDRSLY_					0	0	0			REV__ENSG00000070061|ENST00000374647|ELP1	REV__ENSG00000070061|ENST00000374647|ELP1	MULTI-MSMS	A375_MHC_IP_R1	1	519.70263671875	2	518.738345	1035.46214	-0.4772	-0.00024754	-1.665	-0.00086368	-2.1422	-0.0011112	518.7382021997137	34.835	3.549	34.835	32.535	36.084	0					150	69	3	0	0	0	0.64136	1	11848	11848		12.241	7.4846	1	93373000	+		36932	16565	27009	27230	35952	35952					-0.05417485355565077
NGDPDRSLY	9	Unmodified	_NGDPDRSLY_					0	0	0			REV__ENSG00000070061|ENST00000374647|ELP1	REV__ENSG00000070061|ENST00000374647|ELP1	MULTI-MSMS	A375_MHC_IP_R2	2	519.7025146484375	2	518.738345	1035.46214	-1.0195	-0.00052885	-1.4249	-0.00073915	-2.4444	-0.001268	518.7382689220403	34.159	3.4486	34.911	32.975	36.424	0.75225					158	67	4	0	0	0	0.64136	1	12554	12554		12.241	6.5088	1	66591000	+		36933	16565	27009	27230	35953	35953					-0.05417485355565077
NGELGEIKNI	10	Unmodified	_NGELGEIKNI_					0	0	0		DSCAM|p.D1134N|1|0.24|ENSG00000171587|chr21:40142564-40142564|C/T|missense_variant	DSCAM|p.D1134N|1|0.24|ENSG00000171587|chr21:40142564-40142564|C/T|missense_variant	DSCAM|p.D1134N|1|0.24|ENSG00000171587|chr21:40142564-40142564|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	543.1614990234375	2	543.793121	1085.57169	-0.25754	-0.00014005	-0.17484	-9.5078E-05	-0.43238	-0.00023513	543.7929813882453	44.464	0.40979	44.464	44.216	44.626	0					13	7	2	0	0	0	0.6774	1	15418	15418		27.629	0	1	2273700			36934	804	27010	27231	35954	35954					0.032325202637593975
NGERAKQLLR	10	Unmodified	_NGERAKQLLR_					0	0	0		ENSG00000198077|ENST00000301146|CYP2A7	ENSG00000198077|ENST00000301146|CYP2A7	ENSG00000198077|ENST00000301146|CYP2A7	MULTI-MSMS	A375_MHC_IP_R2	2	395.63250732421875	3	395.566794	1183.67855	-0.68195	-0.00026976	1.0606	0.00041954	0.37865	0.00014978	395.56714541686966	29.747	0.55616	30.446	30.032	30.588	0.69872					15	10	2	0	0	0	0.70496	1	10426	10426		5.7834	0.38072	1	2254700			36935	9226	27011	27232	35955	35955					0.09406115268780013
NGFPNPREV	9	Unmodified	_NGFPNPREV_					0	0	0		nc|ENSG00000188501|Q6UWM7-2|LCTL;ENSG00000188501|ENST00000695545|LCTL	nc|ENSG00000188501|Q6UWM7-2|LCTL	nc|ENSG00000188501|Q6UWM7-2|LCTL	MULTI-MSMS	A375_MHC_IP_R1	1	515.1900634765625	2	515.259248	1028.50394	-0.29891	-0.00015402	1.8743	0.00096576	1.5754	0.00081175	515.2592250918349	42.899	0.76342	42.899	42.587	43.351	0					40	14	4	0	0	0	0.22013	1	14867	14867		36.506	11.107	1	5196700			36936	8909	27012	27233	35956	35956					-0.00916884876369295
NGFPNPREV	9	Unmodified	_NGFPNPREV_					0	0	0		nc|ENSG00000188501|Q6UWM7-2|LCTL;ENSG00000188501|ENST00000695545|LCTL	nc|ENSG00000188501|Q6UWM7-2|LCTL	nc|ENSG00000188501|Q6UWM7-2|LCTL	MULTI-SECPEP	A375_MHC_IP_R2	2	515.1900024414062	2	515.259248	1028.50394	-0.70669	-0.00036413	2.0841	0.0010739	1.3774	0.00070974	515.259210065861	42.118	0.66368	42.891	42.605	43.268	0.7724					37	12	4	0	0	0	0.5212	1	15643	15643		26.268	3.5319	1	8796700			36937	8909	27012	27233	35957	35957					-0.00916884876369295
NGFVIGEYFV	10	Unmodified	_NGFVIGEYFV_					0	0	0			REV__OR4F17|p.G29E|1|0.24|ENSG00000176695|chr19:110764-110764|G/A|missense_variant	REV__OR4F17|p.G29E|1|0.24|ENSG00000176695|chr19:110764-110764|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	382.2926330566406	3	382.193963	1143.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.063	1	27.741	27.241	28.241	0.67857								0	0	0	0.15353	1	9208	9208		8.4443	1.7211	1		+		36938	27671	27013	27234	35958	35958					-0.005976767595711863
NGFVKKFEPK	10	Unmodified	_NGFVKKFEPK_					0	0	0		ENSG00000140379|ENST00000267953|BCL2A1;ENST00000335661.6_1_15:80253411-80263066:-|nuORF	ENSG00000140379|ENST00000267953|BCL2A1	ENSG00000140379|ENST00000267953|BCL2A1	MULTI-MSMS	A375_MHC_IP_R1	1	398.9608154296875	3	398.560758	1192.66044	-0.11757	-4.686E-05	0.32141	0.0001281	0.20384	8.1243E-05	398.56081742742583	33.668	0.50507	33.668	33.393	33.898	0					22	9	3	0	0	0	0.51689	1	11009	11009		27.088	1.0677	1	10800000			36939	5148	27014	27235	35959	35959					0.07181980294080859
NGGGYYHYSY	10	Unmodified	_NGGGYYHYSY_					0	0	0		ENSG00000115286|ENST00000233627|NDUFS7;ENST00000591358.1_1_19:1393133-1393403:+|nuORF;ENST00000436115.6_1_19:1390815-1393403:+|nuORF;ENST00000543289.5_1_19:1388924-1393403:+|nuORF;nc|ENSG00000115286|O75251-2|NDUFS7;ENST00000545446.5_1_19:1388688-1393403:+|nuORF;ENST00000538523.5_1_19:1387763-1393403:+|nuORF	ENSG00000115286|ENST00000233627|NDUFS7	ENSG00000115286|ENST00000233627|NDUFS7	MULTI-MSMS	A375_MHC_IP_R2	2	591.6406860351562	2	590.738345	1179.46214	-0.44105	-0.00026054	0.93667	0.00055333	0.49562	0.00029278	591.2403883362603	101.15	0.66419	101.92	101.55	102.21	0.76428					26	12	3	0	0	0	0.71245	1	38375	38375		6.7232	0.99131	1	2092100			36940	3295	27015	27236	35960	35960					-0.12041485355575787
NGGRGGGP	8	Unmodified	_NGGRGGGP_					0	0	0		ENSG00000275832|ENST00000622683|ARHGAP23;nc|ENSG00000275832|Q9P227-2|ARHGAP23	ENSG00000275832|ENST00000622683|ARHGAP23	ENSG00000275832|ENST00000622683|ARHGAP23	MULTI-MSMS	A375_MHC_IP_R2	2	671.720458984375	1	671.321962	670.314686	-1.1167	-0.00074966	-1.38	-0.00092642	-2.4967	-0.0016761	671.3214137010258	29.864	0.40592	30.563	30.434	30.84	0.69872					10	7	2	0	0	0	0.77839	1	10494	10494		0.79363	0.79363	1	2785400			36941	10013	27016	27237	35961	35961					-0.03365912379047131
NGHCCKSCDPP	11	Unmodified	_NGHCCKSCDPP_					0	0	0			REV__nc|ENSG00000082196|Q9BXJ4-2|C1QTNF3	REV__nc|ENSG00000082196|Q9BXJ4-2|C1QTNF3	MULTI-MSMS	A375_MHC_IP_R1	1	387.8810119628906	3	387.480904	1159.42088	0.30503	0.00011819	0.28773	0.00011149	0.59276	0.00022968	387.4810496613917	97.409	0.50421	97.409	97.187	97.691	0					13	9	2	0	0	0	0.73672	1	35807	35807		1.0136	0	1	1539400	+		36942	27123	27017	27238	35962	35962					-0.15245028982553777
NGHKGAPG	8	Unmodified	_NGHKGAPG_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-SECPEP	A375_MHC_IP_R2	2	369.2734680175781	2	369.188094	736.361636	-0.11151	-4.1168E-05	3.548	0.0013099	3.4365	0.0012687	369.18902952169753	38.508	0.30487	39.283	39.2	39.504	0.77451					7	5	2	0	0	0	0.972	1	14231	14231		0.79363	0	1	1605600	+		36943	20509	27018	27239	35963	35963					-0.01709052827902724
NGIEAIADF	9	Unmodified	_NGIEAIADF_					0	0	0			REV__ENSG00000100985|ENST00000372330|MMP9	REV__ENSG00000100985|ENST00000372330|MMP9	MULTI-MSMS	A375_MHC_IP_R2	2	951.841552734375	1	949.462538	948.455261	-0.47842	-0.00045424	-0.17426	-0.00016545	-0.65268	-0.0006197	949.4626189929527	61.093	1.1597	61.838	61.566	62.726	0.74503					45	22	3	0	0	0	0.13797	1	23268	23268		43.858	5.8843	1	9864800	+		36944	17134	27019	27240	35964	35964					-0.021027982361488284
NGIEAIADF	9	Unmodified	_NGIEAIADF_					0	0	0			REV__ENSG00000100985|ENST00000372330|MMP9	REV__ENSG00000100985|ENST00000372330|MMP9	MULTI-MATCH	A375_MHC_IP_R1	1		1	949.462538	948.455261	0.064675	6.1407E-05	-0.36295	-0.00034461	-0.29828	-0.0002832	949.4621623555953	61.827	1.0222	61.827	61.432	62.454	0	-0.0056576	-7.3787E-05	NaN	43.858	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10010000	+		36945	17134	27019	27240							-0.021027982361488284
NGIEAIADF	9	Unmodified	_NGIEAIADF_					0	0	0			REV__ENSG00000100985|ENST00000372330|MMP9	REV__ENSG00000100985|ENST00000372330|MMP9	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	949.462538	948.455261	-0.47842	-0.00045424	-0.17426	-0.00016545	-0.65268	-0.0006197	949.4626189929527	61.093	1.1597	61.838	61.566	62.726	0.74503	0.0056576	0.00010537	NaN	43.858	45	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9864800	+		36946	17134	27019	27240							-0.021027982361488284
NGIHFKDYQSY	11	Unmodified	_NGIHFKDYQSY_					0	0	0			REV__ANGPT1|p.R391K|1|0.41|ENSG00000154188|chr8:107284715-107284715|C/T|missense_variant	REV__ANGPT1|p.R391K|1|0.41|ENSG00000154188|chr8:107284715-107284715|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	458.2821960449219	3	457.882448	1370.62551	-0.6677	-0.00030573	0.58451	0.00026764	-0.083196	-3.8094E-05	458.217391223117	22.957	0.51091	23.587	23.317	23.828	0.63015					17	9	3	0	0	0	0.72585	1	7324	7324		12.856	3.0917	1	4935400	+		36947	15395	27020	27241	35965	35965					-0.04497307304541209
NGILSYAK	8	Unmodified	_NGILSYAK_					0	0	0		tr|U7STX3|U7STX3_FUSNUFormimidoylglutamaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutGPE=3SV=1	tr|U7STX3|U7STX3_FUSNUFormimidoylglutamaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutGPE=3SV=1	tr|U7STX3|U7STX3_FUSNUFormimidoylglutamaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutGPE=3SV=1	MSMS	A375_MHC_IP_R2	2	433.2855224609375	2	433.242535	864.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.366	1	92.101	91.601	92.601	0.7345								0	0	0	0.16876	1	34757	34757		11.64	3.047	1				36948	29721	27021	27242	35966	35966					0.032861133517030794
NGIVATGK	8	Unmodified	_NGIVATGK_					0	0	0		nc|ENSG00000196632|Q9BYP7-4|WNK3;ENSG00000196632|ENST00000354646|WNK3	nc|ENSG00000196632|Q9BYP7-4|WNK3	nc|ENSG00000196632|Q9BYP7-4|WNK3	MSMS	A375_MHC_IP_R1	1	380.62127685546875	2	380.221603	758.428653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.9	1	129.9	129.4	130.4	0								0	0	0	0.16876	1	49973	49973		2.0598	0	1				36949	9065	27022	27243	35967	35967					0.03977557663176867
NGKSIGGIL	9	Unmodified	_NGKSIGGIL_					0	0	0			REV__ENSG00000109736|ENST00000355443|MFSD10	REV__ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	A375_MHC_IP_R2	2	858.9056396484375	1	858.504343	857.497067	-0.44198	-0.00037944	1.871	0.0016063	1.4291	0.0012269	858.5056900586884	144.71	0.10815	144.73	144.65	144.76	0.02243					4	2	2	0	0	0	0.77827	1	56523	56523		0	0	1	536940	+		36950	17593	27023	27244	35968	35968					0.0626180224306836
NGKSIGGIL	9	Unmodified	_NGKSIGGIL_					0	0	0			REV__ENSG00000109736|ENST00000355443|MFSD10	REV__ENSG00000109736|ENST00000355443|MFSD10	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	858.504343	857.497067	-0.66384	-0.00056991	1.8425	0.0015818	1.1786	0.0010118	858.505796150684	144.66	0.13844	144.66	144.59	144.72	0	-0.036362	-5.9263E-06	NaN	0	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	634790	+		36951	17593	27023	27244							0.0626180224306836
NGKSIGGIL	9	Unmodified	_NGKSIGGIL_					0	0	0			REV__ENSG00000109736|ENST00000355443|MFSD10	REV__ENSG00000109736|ENST00000355443|MFSD10	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	858.504343	857.497067	-0.44198	-0.00037944	1.871	0.0016063	1.4291	0.0012269	858.5056900586884	144.71	0.10815	144.73	144.65	144.76	0.02243	0.036362	1.8615E-05	NaN	0	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	536940	+		36952	17593	27023	27244							0.0626180224306836
NGKVVVFQTQ	10	Unmodified	_NGKVVVFQTQ_					0	0	0		ENSG00000105696|ENST00000262817|TMEM59L;ENST00000598660.1_1_19:18723732-18729158:+|nuORF;ENST00000594859.5_1_19:18723732-18728463:+|nuORF	ENSG00000105696|ENST00000262817|TMEM59L	ENSG00000105696|ENST00000262817|TMEM59L	MULTI-SECPEP	A375_MHC_IP_R1	1	560.7277221679688	2	560.31148	1118.60841	-0.44043	-0.00024678	2.8758	0.0016113	2.4354	0.0013646	560.3128725354147	79.58	0.66772	79.58	79.111	79.778	0					16	12	2	0	0	0	0.90144	1	29111	29111		13.615	0	1	1174400			36953	2631	27024	27245	35969	35969					0.053848168803369845
NGMVISEDTV	10	Unmodified	_NGMVISEDTV_					0	0	0		ENSG00000092470|ENST00000263795|WDR76	ENSG00000092470|ENST00000263795|WDR76	ENSG00000092470|ENST00000263795|WDR76	MSMS	A375_MHC_IP_R2	2	532.6650390625	2	532.750064	1063.48558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.041	1	39.816	39.316	40.316	0.77451								0	0	0	0.15207	1	14399	14399		13.906	2.2658	1				36954	2007	27025	27246	35970	35970					-0.0436280763326522
NGQAPKTSSR	10	Unmodified	_NGQAPKTSSR_					0	0	0		nc|ENSG00000251664|Q9UN75-2|PCDHA12;ENSG00000251664|ENST00000398631|PCDHA12	nc|ENSG00000251664|Q9UN75-2|PCDHA12	nc|ENSG00000251664|Q9UN75-2|PCDHA12	MSMS	A375_MHC_IP_R2	2	523.211181640625	2	523.272887	1044.53122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.04	1	131.25	130.75	131.75	0.2142								0	0	0	0.15353	1	51550	51550		9.3831	1.473	1				36955	9854	27026	27247	35971	35971					0.010735986639929251
NGQLRSSR	8	Unmodified	_NGQLRSSR_					0	0	0		TBC1D5|p.N463Ifs*6|1|0.45|ENSG00000131374|chr3:17238363-17238363|T/-|frameshift_variant;nc|ENSG00000131374|Q92609|TBC1D5;ENSG00000131374|ENST00000696125|TBC1D5	TBC1D5|p.N463Ifs*6|1|0.45|ENSG00000131374|chr3:17238363-17238363|T/-|frameshift_variant	TBC1D5|p.N463Ifs*6|1|0.45|ENSG00000131374|chr3:17238363-17238363|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	459.65057373046875	2	459.249215	916.483876	0.13656	6.2715E-05	2.0069	0.00092167	2.1435	0.00098438	459.2499012741192	126.67	0.50591	126.67	126.41	126.91	0					16	9	3	0	0	0	0.77624	1	48428	48428		8.5933	0	1	6768300			36956	4323	27027	27248	35972	35972					0.022293641836654388
NGQLRSSR	8	Unmodified	_NGQLRSSR_					0	0	0		TBC1D5|p.N463Ifs*6|1|0.45|ENSG00000131374|chr3:17238363-17238363|T/-|frameshift_variant;nc|ENSG00000131374|Q92609|TBC1D5;ENSG00000131374|ENST00000696125|TBC1D5	TBC1D5|p.N463Ifs*6|1|0.45|ENSG00000131374|chr3:17238363-17238363|T/-|frameshift_variant	TBC1D5|p.N463Ifs*6|1|0.45|ENSG00000131374|chr3:17238363-17238363|T/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	459.249215	916.483876	-0.33419	-0.00015348	2.2655	0.0010404	1.9313	0.00088696	459.2500981570235	126.27	0.75845	126.56	126.33	127.09	0.2951	-0.051537	0.00010537	NaN	8.5933	30	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18142000			36957	4323	27027	27248							0.022293641836654388
NGTRGTGG	8	Unmodified	_NGTRGTGG_					0	0	0		nc|ENSG00000175040|Q9Y4C5-2|CHST2;ENSG00000175040|ENST00000309575|CHST2	nc|ENSG00000175040|Q9Y4C5-2|CHST2	nc|ENSG00000175040|Q9Y4C5-2|CHST2	MULTI-MSMS	A375_MHC_IP_R2	2	360.5756530761719	2	360.175184	718.335815	0.028681	1.033E-05	0.94409	0.00034004	0.97277	0.00035037	360.1754515879314	99.38	1.067	100.14	99.708	100.78	0.75977					32	20	2	0	0	0	0.77839	1	37701	37701		0.79363	0	1	6224700			36958	7925	27028	27249	35973	35973					-0.03461947070184124
NGTSCMAR	8	Unmodified	_NGTSCMAR_					0	0	0		ENST00000478155.5_1_2:1648438-1667521:-|nuORF	ENST00000478155.5_1_2:1648438-1667521:-|nuORF	ENST00000478155.5_1_2:1648438-1667521:-|nuORF	MSMS	A375_MHC_IP_R1	1	420.12371826171875	2	420.178555	838.342557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.14	1	103.14	102.64	103.64	0								0	0	0	0.16876	1	37901	37901		5.2307	0	1				36959	12458	27029	27250	35974	35974					-0.08308093505479519
NGVDTAIF	8	Unmodified	_NGVDTAIF_					0	0	0			REV__tr|U7SQR6|U7SQR6_FUSNULipopolysaccharideN-acetylglucosaminyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01764PE=4SV=1	REV__tr|U7SQR6|U7SQR6_FUSNULipopolysaccharideN-acetylglucosaminyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01764PE=4SV=1	MSMS	A375_MHC_IP_R1	1	418.6372985839844	2	418.711068	835.407583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.33	1	41.33	40.83	41.83	0								0	0	0	0.16876	1	14261	14261		19.439	3.5918	1		+		36960	28378	27030	27251	35975	35975					-0.016704524363262863
NGVSGAGF	8	Unmodified	_NGVSGAGF_					0	0	0			REV__ENSG00000184384|ENST00000524717|MAML2	REV__ENSG00000184384|ENST00000524717|MAML2	MSMS	A375_MHC_IP_R1	1	354.5677185058594	2	354.669203	707.323853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.4	1	102.4	101.9	102.9	0								0	0	0	0.16876	1	37633	37633		0.79363	0	1		+		36961	21815	27031	27252	35976	35976					-0.041515638133660104
NGVSLRLRRP	10	Unmodified	_NGVSLRLRRP_					0	0	0			REV__nc|ENSG00000143127|O75578-3|ITGA10	REV__nc|ENSG00000143127|O75578-3|ITGA10	MULTI-MSMS	A375_MHC_IP_R1	1	584.7562255859375	2	584.357088	1166.69962	-0.4538	-0.00026518	-0.17457	-0.00010201	-0.62837	-0.00036719	584.3566604971465	129.98	0.86137	129.98	129.25	130.11	0					22	16	3	0	0	0	0.69833	1	50028	50028		13.042	13.042	1	10170000	+		36962	19336	27032	27253	35977	35977					0.122941253683166
NGVTQNKLSL	10	Unmodified	_NGVTQNKLSL_					0	0	0			REV__ADGRV1|p.N3444Tfs*24|1|0.36|ENSG00000164199|chr5:90728837-90728837|A/-|frameshift_variant	REV__ADGRV1|p.N3444Tfs*24|1|0.36|ENSG00000164199|chr5:90728837-90728837|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	537.7005615234375	2	537.301113	1072.58767	-0.81792	-0.00043947	0.18143	9.748E-05	-0.6365	-0.00034199	537.3009479926085	65.623	0.51068	65.623	65.309	65.819	0					15	9	3	0	0	0	0.73104	1	23759	23759		24.991	0	1	1818200	+		36963	15331	27033	27254	35978	35978					0.054282265006804664
NHESEENAV	9	Unmodified	_NHESEENAV_					0	0	0			REV__nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	REV__nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	A375_MHC_IP_R1	1	514.7163696289062	2	514.71761	1027.42067	-0.68338	-0.00035175	-1.3968	-0.00071895	-2.0802	-0.0010707	514.71675073764	27.053	0.35227	27.053	26.928	27.28	0					12	6	2	0	0	0	0.69674	1	8108	8108		7.2892	4.4	1	5906800	+		36964	17135	27034	27255	35979	35979					-0.09194666114899519
NHESEENAV	9	Unmodified	_NHESEENAV_					0	0	0			REV__nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	REV__nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	514.71761	1027.42067	-0.68338	-0.00035175	-1.3968	-0.00071895	-2.0802	-0.0010707	514.71675073764	27.053	0.35227	27.053	26.928	27.28	0	-0.058865	-0.00016022	NaN	7.2892	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5906800	+		36965	17135	27034	27255							-0.09194666114899519
NHFCMSTTF	9	Unmodified	_NHFCMSTTF_					0	0	0			REV__ENST00000569334.1_1_X:26577244-26577541:+|nuORF	REV__ENST00000569334.1_1_X:26577244-26577541:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	544.1763916015625	2	544.22042	1086.42629	-0.58045	-0.00031589	-0.87414	-0.00047573	-1.4546	-0.00079162	544.2199917708322	75.623	0.85681	75.623	75.362	76.219	0					25	16	2	0	0	0	0.63811	1	27694	27694		12.532	0	1	4086300	+		36966	26268	27035	27256	35980	35980					-0.1134698212845251
NHFCMSTTF	9	Unmodified	_NHFCMSTTF_					0	0	0			REV__ENST00000569334.1_1_X:26577244-26577541:+|nuORF	REV__ENST00000569334.1_1_X:26577244-26577541:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	544.22042	1086.42629	-0.8659	-0.00047124	-1.0463	-0.00056943	-1.9122	-0.0010407	544.2197964058394	75.009	0.76218	75.746	75.416	76.178	0.73752	0.061452	-4.4193E-05	NaN	12.532	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3931900	+		36967	26268	27035	27256							-0.1134698212845251
NHFKEEQYPDY	11	Unmodified	_NHFKEEQYPDY_					0	0	0		nc|ENSG00000292995|Q17RH7|TPRXL	nc|ENSG00000292995|Q17RH7|TPRXL	nc|ENSG00000292995|Q17RH7|TPRXL	MSMS	A375_MHC_IP_R1	1	490.4484558105469	3	490.549246	1468.62591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.466	1	23.466	22.966	23.966	0								0	0	0	0.16334	1	6446	6446		1.3296	0	1				36968	14963	27036	27257	35981	35981					-0.08965932375326702
NHGEYDLYY	9	Unmodified	_NHGEYDLYY_					0	0	0		ENST00000548316.1_1_12:41903559-41967689:+|nuORF;nc|ENSG00000165966|Q6ZMN7-4|PDZRN4;nc|ENSG00000165966|Q6ZMN7-2|PDZRN4;ENSG00000165966|ENST00000402685|PDZRN4	ENST00000548316.1_1_12:41903559-41967689:+|nuORF	ENST00000548316.1_1_12:41903559-41967689:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	587.6455078125	2	587.246003	1172.47745	-0.62944	-0.00036964	-0.16671	-9.7898E-05	-0.79615	-0.00046754	587.2457853908064	32.776	0.40582	33.513	33.265	33.671	0.73691					11	7	2	0	0	0	0.60101	1	11724	11724		14.838	0.93222	1	2807800			36969	7010	27037	27258	35982	35982					-0.10188618558390772
NHPDVASKL	9	Unmodified	_NHPDVASKL_					0	0	0		ENST00000546575.1_1_12:54852895-54857111:-|nuORF;ENST00000552395.5_1_12:54852895-54867341:-|nuORF;ENSG00000170627|ENST00000305879|GTSF1	ENST00000546575.1_1_12:54852895-54857111:-|nuORF	ENST00000546575.1_1_12:54852895-54857111:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	491.1614990234375	2	490.761623	979.508694	-0.46916	-0.00023025	0.077729	3.8146E-05	-0.39143	-0.0001921	490.7616934851502	23.304	0.35764	23.304	23.176	23.533	0					13	6	3	0	0	0	0.076731	1	6401	6401		63.227	36.344	1	8729700			36970	7526	27038	27259	35983	35983					0.018119992663855555
NHPDVASKL	9	Unmodified	_NHPDVASKL_					0	0	0		ENST00000546575.1_1_12:54852895-54857111:-|nuORF;ENST00000552395.5_1_12:54852895-54867341:-|nuORF;ENSG00000170627|ENST00000305879|GTSF1	ENST00000546575.1_1_12:54852895-54857111:-|nuORF	ENST00000546575.1_1_12:54852895-54857111:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	491.161376953125	2	490.761623	979.508694	-0.87211	-0.000428	0.32317	0.0001586	-0.54894	-0.0002694	490.7617928805147	21.095	0.40473	21.714	21.473	21.878	0.61932					16	7	3	0	0	0	0.65527	1	6619	6619		17.113	8.5196	1	3245100			36971	7526	27038	27259	35984	35984					0.018119992663855555
NHPNVIKYY	9	Unmodified	_NHPNVIKYY_					0	0	0		ENSG00000151414|ENST00000367385|NEK7	ENSG00000151414|ENST00000367385|NEK7	ENSG00000151414|ENST00000367385|NEK7	MULTI-MSMS	A375_MHC_IP_R1	1	574.6984252929688	2	574.298373	1146.58219	-0.23289	-0.00013375	-0.0081336	-4.6711E-06	-0.24103	-0.00013842	574.2982890067655	31.895	0.30618	31.895	31.769	32.075	0					9	5	2	0	0	0	0.012843	1	10285	10285		104.8	48.258	1	4462100			36972	5904	27039	27260	35985	35985					0.014765477088531043
NHPNVIKYY	9	Unmodified	_NHPNVIKYY_					0	0	0		ENSG00000151414|ENST00000367385|NEK7	ENSG00000151414|ENST00000367385|NEK7	ENSG00000151414|ENST00000367385|NEK7	MULTI-SECPEP	A375_MHC_IP_R2	2	574.6978149414062	2	574.298373	1146.58219	-0.25485	-0.00014636	-0.37928	-0.00021782	-0.63413	-0.00036418	574.2980507430766	31.122	0.45814	31.84	31.618	32.077	0.71857					19	8	3	0	0	0	0.23894	1	11025	11025		71.134	32.982	1	3128800			36973	5904	27039	27260	35986	35986					0.014765477088531043
NHQKSNETL	9	Unmodified	_NHQKSNETL_					0	0	0			REV__ENSG00000118096|ENST00000264021|IFT46	REV__ENSG00000118096|ENST00000264021|IFT46	MULTI-SECPEP	A375_MHC_IP_R2	2	535.6868896484375	2	535.764894	1069.51524	-0.88795	-0.00047573	4.4826	0.0024016	3.5946	0.0019259	535.7656258658349	62.641	0.6571	63.383	63.028	63.685	0.74263					14	12	2	0	0	0	0.71341	1	23620	23620		13.042	3.6593	1	850700	+		36974	18029	27040	27261	35987	35987					-0.016741075728987198
NHSCDPNL	8	Unmodified	_NHSCDPNL_					0	0	0		ENSG00000101945|ENST00000376687|SUV39H1;nc|ENSG00000101945|O43463-2|SUV39H1;ENST00000482260.1_1_X:48563729-48565958:+|nuORF;nc|ENSG00000152455|Q9H5I1-3|SUV39H2;nc|ENSG00000152455|Q9H5I1-2|SUV39H2;ENSG00000152455|ENST00000354919|SUV39H2	ENSG00000101945|ENST00000376687|SUV39H1	ENSG00000101945|ENST00000376687|SUV39H1	MSMS	A375_MHC_IP_R2	2	450.1712341308594	2	450.187434	898.360315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.427	1	67.163	66.663	67.663	0.73631								0	0	0	0.16876	1	25169	25169		12.532	3.1841	1				36975	2337	27041	27262	35988	35988					-0.09293054978979853
NHSHVAKSY	9	Unmodified	_NHSHVAKSY_					0	0	0			REV__ENST00000231368.9_1_5:96366436-96366532:+|nuORF	REV__ENST00000231368.9_1_5:96366436-96366532:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	521.6873779296875	2	521.756872	1041.49919	-0.68494	-0.00035737	-1.3263	-0.000692	-2.0112	-0.0010494	521.7565835878561	41.63	0.5098	42.405	42.149	42.659	0.77451					23	9	3	0	0	0	0.64808	1	15474	15474		11.64	1.5664	1	5685300	+		36976	23069	27042	27263	35989	35989					-0.01989769019155574
NHTYQLDVVER	11	Unmodified	_NHTYQLDVVER_					0	0	0		nc|ENSG00000077782|P11362-21|FGFR1;ENSG00000077782|ENST00000447712|FGFR1;nc|ENSG00000077782|P11362-19|FGFR1;nc|ENSG00000077782|P11362-2|FGFR1;nc|ENSG00000077782|P11362-7|FGFR1;nc|ENSG00000077782|P11362-20|FGFR1;nc|ENSG00000077782|P11362-3|FGFR1;nc|ENSG00000077782|P11362-14|FGFR1;nc|ENSG00000077782|P11362-4|FGFR1;nc|ENSG00000077782|P11362-5|FGFR1;ENST00000526570.5_1_8:38271148-38285795:-|nuORF;nc|ENSG00000077782|P11362-8|FGFR1;nc|ENSG00000077782|P11362-9|FGFR1;nc|ENSG00000077782|P11362-6|FGFR1;nc|ENSG00000077782|P11362-10|FGFR1;nc|ENSG00000077782|P11362-11|FGFR1;ENST00000470826.5_1_8:38281789-38325791:-|nuORF;ENST00000496296.5_1_8:38281789-38325791:-|nuORF;nc|ENSG00000077782|P11362-16|FGFR1;nc|ENSG00000077782|P11362-18|FGFR1;nc|ENSG00000077782|P11362-12|FGFR1;nc|ENSG00000077782|P11362-13|FGFR1	nc|ENSG00000077782|P11362-21|FGFR1	nc|ENSG00000077782|P11362-21|FGFR1	MSMS	A375_MHC_IP_R1	1	458.6195373535156	3	458.565119	1372.67353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.758	1	35.758	35.258	36.258	0								0	0	0	0.16247	1	11917	11917		5.8681	0	1				36977	1662	27043	27264	35990	35990					0.002097666155123079
NHYKMELQIN	10	Unmodified	_NHYKMELQIN_					0	0	0		ARHGAP10|p.K370Rfs*42|1|0.17|ENSG00000071205|chr4:147906710-147906710|A/-|frameshift_variant;ENSG00000071205|ENST00000336498|ARHGAP10	ARHGAP10|p.K370Rfs*42|1|0.17|ENSG00000071205|chr4:147906710-147906710|A/-|frameshift_variant	ARHGAP10|p.K370Rfs*42|1|0.17|ENSG00000071205|chr4:147906710-147906710|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	430.94781494140625	3	430.548412	1288.62341	-0.34145	-0.00014701	-0.86332	-0.0003717	-1.2048	-0.00051871	430.54800883809463	19.243	0.19848	19.243	19.221	19.42	0					7	5	2	0	0	0	0.93041	1	4667	4667		11.518	1.7536	1	74186000			36978	170	27044	27265	35991	35991					-0.009360593139717821
NIACIWEEN	9	Unmodified	_NIACIWEEN_					0	0	0			REV__nc|ENSG00000136044|Q8NEU8-2|APPL2	REV__nc|ENSG00000136044|Q8NEU8-2|APPL2	MSMS	A375_MHC_IP_R1	1	546.3427734375	2	546.244949	1090.47534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.74	1	101.74	101.24	102.24	0								0	0	0	0.15486	1	37389	37389		6.7232	0.51738	1		+		36979	18911	27045	27266	35992	35992					-0.06627370567821345
NIAILLAYE	9	Unmodified	_NIAILLAYE_					0	0	0			REV__nc|ENSG00000131408|P55055-2|NR1H2	REV__nc|ENSG00000131408|P55055-2|NR1H2	MULTI-SECPEP	A375_MHC_IP_R1	1	511.0333557128906	2	510.292225	1018.5699	-0.79626	-0.00040632	-0.88545	-0.00045184	-1.6817	-0.00085816	510.2917342572671	143.24	0.15228	143.24	143.14	143.29	0					4	2	2	0	0	0	0.8028	1	54921	54921		1.8442	1.8442	1	499730	+		36980	18602	27046	27267	35993	35993					0.06135511245804537
NIAKTSVKPS	10	Unmodified	_NIAKTSVKPS_					0	0	0		ENSG00000168454|ENST00000357775|TXNDC2;nc|ENSG00000168454|Q86VQ3-3|TXNDC2;nc|ENSG00000168454|Q86VQ3|TXNDC2	ENSG00000168454|ENST00000357775|TXNDC2	ENSG00000168454|ENST00000357775|TXNDC2	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1787719726562	2	522.806031	1043.59751	-0.56619	-0.00029601	-0.011078	-5.7916E-06	-0.57726	-0.0003018	522.8061041290238	64.835	0.65987	64.835	64.649	65.309	0					21	12	3	0	0	0	0.70528	1	23598	23598		26.268	19.545	1	2361000			36981	7305	27047	27268	35994	35994					0.07745414506052839
NIALVPSP	8	Unmodified	_NIALVPSP_					0	0	0			REV__ENST00000335099.7_2_11:57244565-57244688:+|nuORF	REV__ENST00000335099.7_2_11:57244565-57244688:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	406.1394958496094	2	405.739628	809.464704	-0.1632	-6.6217E-05	1.0454	0.00042418	0.88225	0.00035796	405.7394796481507	72.212	0.96214	72.946	72.669	73.632	0.73421					26	18	2	0	0	0	0.69059	1	27413	27413		23.148	6.2061	1	1496900	+		36982	23667	27048	27269	35995	35995					0.05235014840036456
NIANHFFTV	9	Unmodified	_NIANHFFTV_					0	0	0		nc|ENSG00000117143|Q16222-2|UAP1;nc|ENSG00000117143|Q16222-3|UAP1;ENSG00000117143|ENST00000367925|UAP1	nc|ENSG00000117143|Q16222-2|UAP1	nc|ENSG00000117143|Q16222-2|UAP1	MULTI-MSMS	A375_MHC_IP_R1	1	531.6842041015625	2	531.771991	1061.52943	-0.64429	-0.00034262	0.15717	8.3577E-05	-0.48712	-0.00025904	531.7720337403578	83.411	1.2674	83.411	83.024	84.292	0					49	24	4	0	0	0	0.51106	1	30446	30446		19.257	6.2145	1	20585000			36983	3459	27049	27270	35996	35996					0.0011258964602802735
NIANHFFTV	9	Unmodified	_NIANHFFTV_					0	0	0		nc|ENSG00000117143|Q16222-2|UAP1;nc|ENSG00000117143|Q16222-3|UAP1;ENSG00000117143|ENST00000367925|UAP1	nc|ENSG00000117143|Q16222-2|UAP1	nc|ENSG00000117143|Q16222-2|UAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	531.6842041015625	2	531.771991	1061.52943	-0.69262	-0.00036832	-0.06048	-3.2162E-05	-0.7531	-0.00040048	531.7718372534957	82.455	1.2654	83.198	82.889	84.155	0.74294					45	24	3	0	0	0	0.022401	1	31351	31351		110.67	58.406	1	20313000			36984	3459	27049	27270	35997	35997					0.0011258964602802735
NIATYYRD	8	Unmodified	_NIATYYRD_					0	0	0			REV__nc|ENSG00000088812|O75882-3|ATRN	REV__nc|ENSG00000088812|O75882-3|ATRN	MULTI-MSMS	A375_MHC_IP_R1	1	508.6800231933594	2	508.245806	1014.47706	-0.30337	-0.00015419	-0.51021	-0.00025931	-0.81358	-0.0004135	508.245448429739	50.042	0.51196	50.042	49.743	50.254	0					15	9	2	0	0	0	0.77515	1	17649	17649		12.532	2.4576	1	2067800	+		36985	16890	27050	27271	35998	35998					-0.029599934875705003
NICHYQGY	8	Unmodified	_NICHYQGY_					0	0	0		ADAM2|p.F91I|1|0.1|ENSG00000104755|chr8:39821659-39821659|A/T|missense_variant	ADAM2|p.F91I|1|0.1|ENSG00000104755|chr8:39821659-39821659|A/T|missense_variant	ADAM2|p.F91I|1|0.1|ENSG00000104755|chr8:39821659-39821659|A/T|missense_variant	MSMS	A375_MHC_IP_R1	1	499.1971740722656	2	499.213452	996.412351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.721	1	48.721	48.221	49.221	0								0	0	0	0.16876	1	17202	17202		5.7604	0	1				36986	44	27051	27272	35999	35999					-0.08599891565222606
NIDALRQNFW	10	Unmodified	_NIDALRQNFW_					0	0	0		ENSG00000272899|ENST00000609480|ATP6V1FNB	ENSG00000272899|ENST00000609480|ATP6V1FNB	ENSG00000272899|ENST00000609480|ATP6V1FNB	MULTI-MSMS	A375_MHC_IP_R2	2	426.6103515625	3	426.219283	1275.63602	-0.20523	-8.7474E-05	-0.72828	-0.00031041	-0.93351	-0.00039788	426.2190078221026	31.326	0.86632	32.045	31.77	32.636	0.71857					50	16	4	0	0	0	0.66857	1	11305	11305		15.739	15.739	1	15190000			36987	9995	27052	27273	36000	36000					0.009227201405337837
NIDFDQLVT	9	Unmodified	_NIDFDQLVT_					0	0	0			REV__nc|ENSG832|P63136|ERVK-25_pol	REV__nc|ENSG832|P63136|ERVK-25_pol	MULTI-SECPEP	A375_MHC_IP_R2	2	533.1898193359375	2	532.766571	1063.51859	-0.70294	-0.0003745	-0.45419	-0.00024198	-1.1571	-0.00061648	532.7663229479331	80.108	0.96536	80.853	80.249	81.214	0.74474					35	18	3	0	0	0	0.49205	1	30501	30501		16.149	16.149	1	2786300	+		36988	27571	27053	27274	36001	36001					-0.010628575189002731
NIDIDQAFDA	10	Unmodified	_NIDIDQAFDA_					0	0	0			REV__ENSG00000148143|ENST00000277225|ZNF462	REV__ENSG00000148143|ENST00000277225|ZNF462	MULTI-MSMS	A375_MHC_IP_R1	1	561.1848754882812	2	561.259111	1120.50367	-0.30907	-0.00017347	-0.017061	-9.5755E-06	-0.32613	-0.00018304	561.2588330639866	54.305	0.50428	54.305	54.063	54.567	0					20	9	3	0	0	0	0.50967	1	19357	19357		27.629	2.2295	1	3116500	+		36989	19615	27054	27275	36002	36002					-0.051763493868975274
NIDLIITGRQ	10	Unmodified	_NIDLIITGRQ_					0	0	0		tr|U7SST0|U7SST0_FUSNUElectrontransferflavoproteinbetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01366PE=3SV=1	tr|U7SST0|U7SST0_FUSNUElectrontransferflavoproteinbetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01366PE=3SV=1	tr|U7SST0|U7SST0_FUSNUElectrontransferflavoproteinbetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01366PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	381.9236145019531	3	381.555784	1141.64552	0.0056556	2.1579E-06	0.28945	0.00011044	0.29511	0.0001126	381.5559195267944	30.303	0.35244	30.303	30.2	30.553	0					9	6	2	0	0	0	0.71076	1	9569	9569		7.4771	0.84669	1	2597100			36990	29649	27055	27276	36003	36003					0.08036488426091637
NIDLIITGRQ	10	Unmodified	_NIDLIITGRQ_					0	0	0		tr|U7SST0|U7SST0_FUSNUElectrontransferflavoproteinbetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01366PE=3SV=1	tr|U7SST0|U7SST0_FUSNUElectrontransferflavoproteinbetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01366PE=3SV=1	tr|U7SST0|U7SST0_FUSNUElectrontransferflavoproteinbetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01366PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	381.555784	1141.64552	0.0056556	2.1579E-06	0.28945	0.00011044	0.29511	0.0001126	381.5559195267944	30.303	0.35244	30.303	30.2	30.553	0	0	0	NaN	7.4771	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2597100			36991	29649	27055	27276							0.08036488426091637
NIDLKLKDY	9	Unmodified	_NIDLKLKDY_					0	0	0		nc|ENSG00000291092|Q13401|PMS2P3;nc|ENSG00000291092|Q13401-2|PMS2P3;ENST00000437568.6_1_7:75140404-75155248:-|nuORF;ENST00000418756.5_1_7:75141716-75156997:-|nuORF;ENST00000415839.2_1_7:6043570-6045589:-|nuORF;ENST00000380416.5_1_7:6042077-6048650:-|nuORF;nc|ENSG00000122512|P54278-4|PMS2;nc|ENSG00000241350|Q13670|PMS2P11;nc|ENSG00000291154|O95744|PMS2P2;nc|ENSG00000078319|A4D2B8-3|PMS2P1;nc|ENSG00000078319|A4D2B8-2|PMS2P1;nc|ENSG00000122512|P54278-2|PMS2;nc|ENSG00000122512|P54278-3|PMS2;ENSG00000122512|ENST00000265849|PMS2;nc|ENSG00000078319|A4D2B8|PMS2P1	nc|ENSG00000291092|Q13401|PMS2P3;nc|ENSG00000122512|P54278-2|PMS2;nc|ENSG00000078319|A4D2B8|PMS2P1	nc|ENSG00000078319|A4D2B8|PMS2P1	MULTI-SECPEP	A375_MHC_IP_R1	1	561.1848754882812	2	561.313689	1120.61282	-0.35841	-0.00020118	-0.2512	-0.000141	-0.60961	-0.00034218	561.3136508249249	54.52	0.60724	54.52	54.113	54.72	0					17	11	2	0	0	0	0.47368	1	19357	19357		34.102	3.4659	1	2117200			36992	11712;3787;14486	27056	27277	36004	36004					0.05734281303239186
NIDNFLNRY	9	Unmodified	_NIDNFLNRY_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	MULTI-SECPEP	A375_MHC_IP_R1	1	585.1907958984375	2	584.790912	1167.56727	-0.33284	-0.00019464	-0.0080618	-4.7145E-06	-0.34091	-0.00019936	584.7910314503014	76.597	0.45782	76.597	76.421	76.878	0					10	8	2	0	0	0	0.41434	1	27958	27958		39.95	16.801	1	1599400			36993	4566	27057	27278	36005	36005					-0.009809441591414725
NIDNFLSRY	9	Unmodified	_NIDNFLSRY_					0	0	0		ENSG00000067900|ENST00000399799|ROCK1	ENSG00000067900|ENST00000399799|ROCK1	ENSG00000067900|ENST00000399799|ROCK1	MULTI-SECPEP	A375_MHC_IP_R2	2	571.6849975585938	2	571.285463	1140.55637	-0.37724	-0.00021551	2.3837	0.0013618	2.0065	0.0011463	571.2852537038611	80.954	1.78	81.699	81.416	83.196	0.74474					43	34	2	0	0	0	0.16237	1	30763	30763		63.227	28.826	1	5973500			36994	1447	27058	27279	36006	36006					-0.008283465334216089
NIDNPDLAKY	10	Unmodified	_NIDNPDLAKY_					0	0	0		nc|ENSG00000162971|A2RUC4-2|TYW5;ENST00000452512.6_1_2:200797792-200820219:-|nuORF;ENSG00000162971|ENST00000354611|TYW5	nc|ENSG00000162971|A2RUC4-2|TYW5	nc|ENSG00000162971|A2RUC4-2|TYW5	MULTI-MSMS	A375_MHC_IP_R1	1	582.6939086914062	2	581.790578	1161.5666	-0.015062	-8.763E-06	2.0188	0.0011745	2.0038	0.0011658	581.7904330769431	47.895	0.55481	47.895	47.618	48.173	0					21	10	3	0	0	0	0.41205	1	16904	16904		33.445	9.6551	1	3879700			36995	6619	27059	27280	36007	36007					-0.007717835988614752
NIDNPDLAKY	10	Unmodified	_NIDNPDLAKY_					0	0	0		nc|ENSG00000162971|A2RUC4-2|TYW5;ENST00000452512.6_1_2:200797792-200820219:-|nuORF;ENSG00000162971|ENST00000354611|TYW5	nc|ENSG00000162971|A2RUC4-2|TYW5	nc|ENSG00000162971|A2RUC4-2|TYW5	MULTI-MSMS	A375_MHC_IP_R2	2	582.1903686523438	2	581.790578	1161.5666	-0.16451	-9.5712E-05	2.8911	0.001682	2.7266	0.0015863	581.7917009694572	47.2	0.56076	47.961	47.664	48.225	0.76127					22	10	3	0	0	0	0.43567	1	17764	17764		32.037	2.1969	1	3679500			36996	6619	27059	27280	36008	36008					-0.007717835988614752
NIDPITMAY	9	Oxidation (M)	_NIDPITM(Oxidation (M))AY_		NIDPITM(1)AY		NIDPITM(93)AY	0	0	1		ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	MULTI-MSMS	A375_MHC_IP_R1	1	527.6690063476562	2	527.2497	1052.48485	-0.4589	-0.00024195	-0.6273	-0.00033074	-1.0862	-0.0005727	527.2495198954997	77.775	1.5762	77.775	76.776	78.352	0					62	20	5	0	0	0	0.012843	1	28281	28281		92.653	52.696	1	51871000			36997	3393	27060	27281	36009	36009		169			-0.03929602282300948
NIDPITMAY	9	Oxidation (M)	_NIDPITM(Oxidation (M))AY_		NIDPITM(1)AY		NIDPITM(110)AY	0	0	1		ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	MULTI-MSMS	A375_MHC_IP_R1	1	527.6493530273438	2	527.2497	1052.48485	-0.32404	-0.00017085	-0.19838	-0.0001046	-0.52242	-0.00027545	527.2496440631186	78.73	1.987	78.73	78.251	80.238	0					93	38	5	0	0	0	0.0094639	5	28752	28752;28775;28870;28954;29002		106.94	60.919	1	48379000			36998	3393	27060	27281	36010;36011;36012;36013;36014	36010		169			-0.03929602282300948
NIDPITMAY	9	Oxidation (M)	_NIDPITM(Oxidation (M))AY_		NIDPITM(1)AY		NIDPITM(110)AY	0	0	1		ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	MULTI-MSMS	A375_MHC_IP_R1	1	527.0106201171875	2	527.2497	1052.48485	-0.53792	-0.00028362	-0.058435	-3.081E-05	-0.59636	-0.00031443	527.2496484208434	83.129	4.7683	83.129	81.506	86.274	0					183	93	2	0	0	0	0.0094639	8	30392	29957;30392;30618;30788;30902;31280;31313;31527		106.94	56.409	1	11753000			36999	3393	27060	27281	36015;36016;36017;36018;36019;36020;36021;36022	36016		169			-0.03929602282300948
NIDPITMAY	9	Oxidation (M)	_NIDPITM(Oxidation (M))AY_		NIDPITM(1)AY		NIDPITM(110)AY	0	0	1		ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	MULTI-MSMS	A375_MHC_IP_R1	1	527.6493530273438	2	527.2497	1052.48485	-0.44781	-0.00023611	-0.70688	-0.0003727	-1.1547	-0.00060881	527.2493732955609	102.09	1.7204	102.09	101.24	102.96	0					51	33	2	0	0	0	0.0094639	2	37485	37485;37638		106.94	58.594	1	5038700			37000	3393	27060	27281	36023;36024	36023		169			-0.03929602282300948
NIDPITMAY	9	Oxidation (M)	_NIDPITM(Oxidation (M))AY_		NIDPITM(1)AY		NIDPITM(42)AY	0	0	1		ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	MSMS	A375_MHC_IP_R1	1	527.1512451171875	2	527.2497	1052.48485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.587	1	89.587	89.087	90.087	0								0	0	0	0.1008	1	32911	32911		41.84	19.103	1				37001	3393	27060	27281	36025	36025		169			-0.03929602282300948
NIDPITMAY	9	Oxidation (M)	_NIDPITM(Oxidation (M))AY_		NIDPITM(1)AY		NIDPITM(42)AY	0	0	1		ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	MSMS	A375_MHC_IP_R1	1	527.1860961914062	2	527.2497	1052.48485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.854	1	91.854	91.354	92.354	0								0	0	0	0.1008	1	33751	33751		41.84	17.166	1				37002	3393	27060	27281	36026	36026		169			-0.03929602282300948
NIDPITMAY	9	Oxidation (M)	_NIDPITM(Oxidation (M))AY_		NIDPITM(1)AY		NIDPITM(44)AY	0	0	1		ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	MULTI-SECPEP	A375_MHC_IP_R1	1	526.6769409179688	2	527.2497	1052.48485	-0.6503	-0.00034287	-0.13863	-7.3091E-05	-0.78893	-0.00041596	527.2495682449406	86.413	2.0332	86.413	86.172	88.205	0					50	39	2	0	0	0	0.37663	1	31619	31619		43.772	21.036	1	2613100			37003	3393	27060	27281	36027	36027		169			-0.03929602282300948
NIDPITMAY	9	Oxidation (M)	_NIDPITM(Oxidation (M))AY_		NIDPITM(1)AY		NIDPITM(96)AY	0	0	1		ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	MULTI-MSMS	A375_MHC_IP_R2	2	527.64990234375	2	527.2497	1052.48485	-0.48107	-0.00025365	-0.62308	-0.00032852	-1.1042	-0.00058217	527.2494983900455	77.064	0.91158	77.807	77.404	78.315	0.74293					62	17	5	0	0	0	0.0099737	1	29188	29188		96.367	48.021	1	57525000			37004	3393	27060	27281	36028	36028		169			-0.03929602282300948
NIDPITMAY	9	Oxidation (M)	_NIDPITM(Oxidation (M))AY_		NIDPITM(1)AY		NIDPITM(110)AY	0	0	1		ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	MULTI-MSMS	A375_MHC_IP_R2	2	527.6492919921875	2	527.2497	1052.48485	-0.4593	-0.00024217	-0.40104	-0.00021145	-0.86034	-0.00045362	527.2495140475984	78.107	1.7303	78.85	78.315	80.046	0.74293					88	33	5	0	0	0	0.0094639	4	29625	29625;29837;29870;29895		106.94	60.919	1	57782000			37005	3393	27060	27281	36029;36030;36031;36032	36029		169			-0.03929602282300948
NIDPITMAY	9	Oxidation (M)	_NIDPITM(Oxidation (M))AY_		NIDPITM(1)AY		NIDPITM(110)AY	0	0	1		ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	MULTI-MSMS	A375_MHC_IP_R2	2	527.649169921875	2	527.2497	1052.48485	-0.44823	-0.00023633	-0.2877	-0.00015169	-0.73593	-0.00038802	527.2495194546825	82.953	6.2069	83.693	81.411	87.618	0.73962					253	121	3	0	0	0	0.0094639	5	31675	31558;31675;31696;31770;32110		106.94	56.409	1	10021000			37006	3393	27060	27281	36033;36034;36035;36036;36037	36034		169			-0.03929602282300948
NIDPITMAY	9	Oxidation (M)	_NIDPITM(Oxidation (M))AY_		NIDPITM(1)AY		NIDPITM(96)AY	0	0	1		ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	MULTI-MSMS	A375_MHC_IP_R2	2	527.6489868164062	2	527.2497	1052.48485	-0.38345	-0.00020217	-0.48223	-0.00025426	-0.86568	-0.00045643	527.2493095868072	101.41	1.4263	102.17	101.55	102.97	0.76428					48	27	3	0	0	0	0.0099737	2	38392	38392;38579		96.367	54.272	1	6476900			37007	3393	27060	27281	36038;36039	36038		169			-0.03929602282300948
NIDPITMAY	9	Unmodified	_NIDPITMAY_					0	0	0		ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	MULTI-MSMS	A375_MHC_IP_R1	1	519.65185546875	2	519.252243	1036.48993	-0.4639	-0.00024088	-0.53198	-0.00027623	-0.99588	-0.00051711	519.2520057565117	102.11	1.7737	102.11	101.65	103.42	0					90	34	5	0	0	0	0.073067	3	37439	37439;37610;37646		55.503	23.197	1	56544000			37008	3393	27060	27282	36040;36041;36042	36040					-0.02685298419692117
NIDPITMAY	9	Unmodified	_NIDPITMAY_					0	0	0		ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	MULTI-SECPEP	A375_MHC_IP_R1	1	1036.9197998046875	1	1037.49721	1036.48993	0.21668	0.00022481	-0.49769	-0.00051635	-0.281	-0.00029154	1037.4966272889988	102.12	0.90923	102.12	101.75	102.66	0					40	17	3	0	0	0	0.022401	1	37550	37550		99.755	51.409	1	36125000			37009	3393	27060	27282	36043	36043					-0.02685298419692117
NIDPITMAY	9	Unmodified	_NIDPITMAY_					0	0	0		ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	MULTI-MSMS	A375_MHC_IP_R2	2	520.2268676757812	2	519.252243	1036.48993	-0.58305	-0.00030275	-0.37359	-0.00019398	-0.95664	-0.00049674	519.2520690483632	101.37	1.9325	102.13	101.7	103.63	0.76429					92	37	5	0	0	0	0.2487	1	38525	38525		34.402	15.145	1	64286000			37010	3393	27060	27282	36044	36044					-0.02685298419692117
NIDPITMAY	9	Unmodified	_NIDPITMAY_					0	0	0		ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	MULTI-MATCH	A375_MHC_IP_R2	2		1	1037.49721	1036.48993	0.14417	0.00014958	-0.42872	-0.00044479	-0.28455	-0.00029522	1037.4967584647102	101.37	0.8143	102.14	101.75	102.57	0.76428	0.0099571	2.0824E-05	NaN	125.53	40	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37929000			37011	3393	27060	27282							-0.02685298419692117
NIDQDMRDD	9	Unmodified	_NIDQDMRDD_					0	0	0		nc|ENSG00000141519|Q4G0X9-5|CCDC40;nc|ENSG00000141519|Q4G0X9-4|CCDC40;nc|ENSG00000141519|Q4G0X9-3|CCDC40;ENST00000574799.5_1_17:78022329-78073571:+|nuORF;nc|ENSG00000141519|Q4G0X9-2|CCDC40;ENSG00000141519|ENST00000397545|CCDC40	nc|ENSG00000141519|Q4G0X9-5|CCDC40	nc|ENSG00000141519|Q4G0X9-5|CCDC40	MULTI-MSMS	A375_MHC_IP_R2	2	561.1774291992188	2	561.230027	1120.4455	-0.66323	-0.00037222	-0.02056	-1.1539E-05	-0.68379	-0.00038376	561.2299166492355	66.929	0.76213	67.665	67.342	68.104	0.73631					21	14	2	0	0	0	0.73415	1	25441	25441		3.9444	0.3479	1	1620600			37012	5249	27061	27283	36045	36045					-0.10990354303839922
NIDQVGTFY	9	Unmodified	_NIDQVGTFY_					0	0	0			REV__ENST00000588524.5_1_19:11687775-11688428:-|nuORF	REV__ENST00000588524.5_1_19:11687775-11688428:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	529.1535034179688	2	528.753464	1055.49238	-0.02258	-1.1939E-05	-0.31091	-0.00016439	-0.33349	-0.00017633	528.7531814149233	69.538	0.9635	69.538	69.121	70.085	0					41	18	4	0	0	0	0.60917	1	25191	25191		19.257	0	1	10811000	+		37013	17225	27062	27284	36046	36046					-0.03315126690381476
NIDSKRIVK	9	Unmodified	_NIDSKRIVK_					0	0	0			REV__tr|U7SMC2|U7SMC2_FUSNUN-acetyl-D-galactosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01949PE=3SV=1	REV__tr|U7SMC2|U7SMC2_FUSNUN-acetyl-D-galactosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01949PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	358.297119140625	3	358.220624	1071.64004	0.26728	9.5745E-05	2.8251	0.001012	3.0923	0.0011077	358.2214656121986	21.058	0.45602	21.058	20.895	21.352	0					12	8	2	0	0	0	0.69179	1	5436	5436		12.175	0	1	566100	+		37014	28299	27063	27285	36047	36047					0.10708809634297722
NIDVHEYY	8	Unmodified	_NIDVHEYY_					0	0	0			REV__nc|ENSG00000100478|Q9Y587-4|AP4S1	REV__nc|ENSG00000100478|Q9Y587-4|AP4S1	MULTI-MSMS	A375_MHC_IP_R1	1	527.2389526367188	2	526.737814	1051.46108	-0.68894	-0.00036289	0.44235	0.000233	-0.24659	-0.00012989	526.738145838343	84.631	0.46079	84.631	84.391	84.852	0					12	8	2	0	0	0	0.77624	1	31062	31062		8.5933	0	1	1560100	+		37015	27142	27064	27286	36048	36048					-0.06259699724478196
NIDYPVLY	8	Unmodified	_NIDYPVLY_					0	0	0		ENSG00000105229|ENST00000262971|PIAS4;ENST00000593518.1_1_19:4007758-4017708:+|nuORF;ENST00000599999.5_1_19:4007758-4028181:+|nuORF	ENSG00000105229|ENST00000262971|PIAS4	ENSG00000105229|ENST00000262971|PIAS4	MULTI-MSMS	A375_MHC_IP_R2	2	499.1552734375	2	498.755475	995.496398	-0.49998	-0.00024937	0.29721	0.00014824	-0.20277	-0.00010113	498.75542769219396	105.35	0.45746	106.11	105.87	106.33	0.76308					15	8	3	0	0	0	0.75801	1	39876	39876		18.146	1.2041	1	1174200			37016	2580	27065	27287	36049	36049					-0.0015303719666235338
NIDYPVLY	8	Unmodified	_NIDYPVLY_					0	0	0		ENSG00000105229|ENST00000262971|PIAS4;ENST00000593518.1_1_19:4007758-4017708:+|nuORF;ENST00000599999.5_1_19:4007758-4028181:+|nuORF	ENSG00000105229|ENST00000262971|PIAS4	ENSG00000105229|ENST00000262971|PIAS4	MULTI-MATCH	A375_MHC_IP_R1	1		2	498.755475	995.496398	-0.22973	-0.00011458	0.2554	0.00012738	0.025673	1.2805E-05	498.7554118376106	106.14	0.45861	106.14	105.81	106.27	0	0.013244	-2.8203E-05	NaN	18.146	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	770660			37017	2580	27065	27287							-0.0015303719666235338
NIDYPVLY	8	Unmodified	_NIDYPVLY_					0	0	0		ENSG00000105229|ENST00000262971|PIAS4;ENST00000593518.1_1_19:4007758-4017708:+|nuORF;ENST00000599999.5_1_19:4007758-4028181:+|nuORF	ENSG00000105229|ENST00000262971|PIAS4	ENSG00000105229|ENST00000262971|PIAS4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	498.755475	995.496398	-0.49998	-0.00024937	0.29721	0.00014824	-0.20277	-0.00010113	498.75542769219396	105.35	0.45746	106.11	105.87	106.33	0.76308	-0.013244	1.3504E-05	NaN	18.146	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1174200			37018	2580	27065	27287							-0.0015303719666235338
NIDYQIIM	8	Unmodified	_NIDYQIIM_					0	0	0		ENST00000441178.2_1_10:105006485-105006641:+|nuORF	ENST00000441178.2_1_10:105006485-105006641:+|nuORF	ENST00000441178.2_1_10:105006485-105006641:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1009.4581909179688	1	1009.50229	1008.49502	0.20066	0.00020256	-0.6943	-0.0007009	-0.49365	-0.00049834	1009.5016574268628	100.1	0.45419	100.1	99.825	100.28	0					15	8	2	0	0	0	0.73111	1	36830	36830		25.399	6.1423	1	3596200			37019	11981	27066	27288	36050	36050					-0.00888994557078604
NIDYQIIM	8	Unmodified	_NIDYQIIM_					0	0	0		ENST00000441178.2_1_10:105006485-105006641:+|nuORF	ENST00000441178.2_1_10:105006485-105006641:+|nuORF	ENST00000441178.2_1_10:105006485-105006641:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	1009.50229	1008.49502	0.218	0.00022007	-0.63473	-0.00064076	-0.41673	-0.00042069	1009.5016693736718	99.329	0.46107	100.09	99.858	100.32	0.75977	-0.0067873	3.0693E-05	NaN	25.399	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2617100			37020	11981	27066	27288							-0.00888994557078604
NIEDKTGLWY	10	Unmodified	_NIEDKTGLWY_					0	0	0		ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	MULTI-MSMS	A375_MHC_IP_R1	1	620.2057495117188	2	619.806228	1237.5979	-0.44953	-0.00027862	-0.31325	-0.00019415	-0.76278	-0.00047278	619.8061543026566	77.142	0.70903	77.142	76.878	77.588	0					19	13	2	0	0	0	0.26783	1	28177	28177		42.312	18.292	1	1836600			37021	4563	27067	27289	36051	36051					-0.0113921056477011
NIEDKTGLWY	10	Unmodified	_NIEDKTGLWY_					0	0	0		ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	MULTI-MATCH	A375_MHC_IP_R2	2		2	619.806228	1237.5979	-0.69384	-0.00043005	-0.032304	-2.0022E-05	-0.72615	-0.00045007	619.8061649436387	76.457	0.50821	77.198	76.893	77.401	0.74052	0.027659	9.0109E-05	NaN	42.312	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1899800			37022	4563	27067	27289							-0.0113921056477011
NIEELFELV	9	Unmodified	_NIEELFELV_					0	0	0			REV__nc|ENSG00000142892|Q92643-2|PIGK	REV__nc|ENSG00000142892|Q92643-2|PIGK	MULTI-SECPEP	A375_MHC_IP_R2	2	553.191650390625	2	553.292422	1104.57029	-0.69389	-0.00038392	-0.40439	-0.00022375	-1.0983	-0.00060767	553.2931130150358	84.188	0.51158	84.928	84.663	85.175	0.73962					14	9	3	0	0	0	0.53748	1	32031	32031		18.146	5.1039	1	2571500	+		37023	19328	27068	27290	36052	36052					0.02218886175000989
NIEMKIYCL	9	Unmodified	_NIEMKIYCL_					0	0	0		ENST00000426528.5_1_X:102155714-102155985:+|nuORF	ENST00000426528.5_1_X:102155714-102155985:+|nuORF	ENST00000426528.5_1_X:102155714-102155985:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	563.6876220703125	2	563.785395	1125.55624	-0.38412	-0.00021656	3.1283	0.0017637	2.7442	0.0015471	563.7871598527692	55.601	0.8133	55.601	55.279	56.092	0					48	15	5	0	0	0	0.50702	1	19835	19835		25.399	7.253	1	12346000			37024	11807	27069	27291	36053	36053					-0.001518058493047647
NIFHFLYRKNR	11	Unmodified	_NIFHFLYRKNR_					0	0	0		nc|ENSG00000205238|Q495Y8-2|SPDYE2;ENSG00000260097|ENST00000563237|SPDYE6;ENSG00000205238|ENST00000691607|SPDYE2;ENSG00000173678|ENST00000507450|SPDYE2B	nc|ENSG00000205238|Q495Y8-2|SPDYE2	nc|ENSG00000205238|Q495Y8-2|SPDYE2	MSMS	A375_MHC_IP_R2	2	754.3521728515625	2	754.417677	1506.8208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.14	1	143.17	142.67	143.67	0.030731								0	0	0	0.16302	1	55947	55947		2.9952	0.49676	1				37025	7820	27070	27292	36054	36054					0.0876632801098367
NIFLLSMEI	9	Unmodified	_NIFLLSMEI_					0	0	0		ENST00000519374.5_1_5:172461837-172461912:+|nuORF	ENST00000519374.5_1_5:172461837-172461912:+|nuORF	ENST00000519374.5_1_5:172461837-172461912:+|nuORF	MSMS	A375_MHC_IP_R1	1	540.2037353515625	2	540.293911	1078.57327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.26	1	109.26	108.76	109.76	0								0	0	0	0.15283	1	40077	40077		16.942	1.0951	1				37026	12978	27071	27293	36055	36055					0.03712438028173892
NIFNKEFKQ	9	Unmodified	_NIFNKEFKQ_					0	0	0			REV__ENSG00000116039|ENST00000234396|ATP6V1B1	REV__ENSG00000116039|ENST00000234396|ATP6V1B1	MULTI-SECPEP	A375_MHC_IP_R2	2	390.288818359375	3	389.876746	1166.60841	-0.36735	-0.00014322	4.1276	0.0016093	3.7602	0.001466	389.8779244540414	34.838	0.30212	35.602	35.425	35.727	0.76338					6	5	2	0	0	0	0.69507	1	12564	12564		3.5871	0	1	507540	+		37027	17934	27072	27294	36056	36056					0.031768168803409935
NIFPYPVGV	9	Unmodified	_NIFPYPVGV_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;nc|ENSG00000139218|Q99590-2|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	A375_MHC_IP_R1	1	503.673095703125	2	503.273835	1004.53312	-0.01062	-5.345E-06	0.187	9.4113E-05	0.17638	8.8768E-05	503.2736764422161	126.54	0.35361	126.54	126.41	126.76	0					13	6	3	0	0	0	0.001076	1	48365	48365		153.26	119.16	1	7838300			37028	5060	27073	27295	36057	36057					0.03103259419913229
NIFPYPVGV	9	Unmodified	_NIFPYPVGV_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;nc|ENSG00000139218|Q99590-2|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-SECPEP	A375_MHC_IP_R1	1	1005.3311767578125	1	1005.54039	1004.53312	0.57034	0.0005735	-0.044313	-4.4558E-05	0.52603	0.00052894	1005.5397982805102	126.62	0.55586	126.62	126.41	126.96	0					15	10	3	0	0	0	0.010934	1	48425	48425		123.1	85.122	1	28501000			37029	5060	27073	27295	36058	36058					0.03103259419913229
NIFPYPVGV	9	Unmodified	_NIFPYPVGV_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;nc|ENSG00000139218|Q99590-2|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	A375_MHC_IP_R2	2	1007.5462646484375	1	1005.54039	1004.53312	0.067822	6.8198E-05	0.51593	0.00051879	0.58376	0.00058699	1005.540851642462	126.23	0.45467	126.52	126.33	126.78	0.2951					18	8	3	0	0	0	0.098973	1	49343	49343		50.855	32.72	1	33206000			37030	5060	27073	27295	36059	36059					0.03103259419913229
NIFPYPVGV	9	Unmodified	_NIFPYPVGV_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;nc|ENSG00000139218|Q99590-2|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	A375_MHC_IP_R2	2	503.67352294921875	2	503.273835	1004.53312	-0.59751	-0.00030071	0.29648	0.00014921	-0.30103	-0.0001515	503.27378225295	126.26	0.50636	126.56	126.23	126.73	0.2951					14	9	2	0	0	0	0.001076	1	49389	49389		153.26	119.16	1	12420000			37031	5060	27073	27295	36060	36060					0.03103259419913229
NIFSIVFVFFV	11	Unmodified	_NIFSIVFVFFV_					0	0	0		ENSG00000174944|ENST00000309170|P2RY14	ENSG00000174944|ENST00000309170|P2RY14	ENSG00000174944|ENST00000309170|P2RY14	MULTI-MSMS	A375_MHC_IP_R1	1	666.7722778320312	2	666.373549	1330.73255	-0.78894	-0.00052573	-1.1362	-0.00075715	-1.9252	-0.0012829	666.3725575826082	130.79	1.0688	130.79	130.11	131.18	0					36	20	2	0	0	0	0.7342	1	50105	50105		4.897	0.36815	1	41668000			37032	7917	27074	27296	36061	36061					0.08040894647797359
NIFSQVYNQ	9	Unmodified	_NIFSQVYNQ_					0	0	0		tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1	tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1	tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	371.2818603515625	3	371.517218	1111.52982	0.22959	8.5295E-05	0.0064286	2.3883E-06	0.23602	8.7684E-05	371.51745301822416	27.553	0.55621	27.553	27.28	27.836	0					26	10	4	0	0	0	0.76827	1	8429	8429		7.1017	2.9122	1	3069000			37033	30055	27075	27297	36062	36062					-0.02148035424761474
NIGDLMLIY	9	Unmodified	_NIGDLMLIY_					0	0	0			REV__ENST00000422447.7_1_11:18428940-18429036:+|nuORF	REV__ENST00000422447.7_1_11:18428940-18429036:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	526.6781005859375	2	526.27826	1050.54197	-0.38519	-0.00020272	-1.0315	-0.00054286	-1.4167	-0.00074558	526.2777540878883	79.724	1.776	80.469	79.134	80.91	0.74473					67	34	4	0	0	0	0.098973	1	30165	30165		50.855	4.8341	1	22043000	+		37034	24604	27076	27298	36063	36063					0.018718649940637988
NIGGGHIREV	10	Unmodified	_NIGGGHIREV_					0	0	0			REV__ENSG00000049167|ENST00000676185|ERCC8	REV__ENSG00000049167|ENST00000676185|ERCC8	MULTI-MSMS	A375_MHC_IP_R1	1	526.6856079101562	2	526.285797	1050.55704	-0.79325	-0.00041748	0.8129	0.00042782	0.019643	1.0338E-05	526.2861523586911	137.51	0.25505	137.51	137.39	137.64	0					7	4	2	0	0	0	0.67512	1	52951	52951		15.248	0.66679	1	2064400	+		37035	16378	27077	27299	36064	36064					0.03378492906290376
NIGGGHIREV	10	Unmodified	_NIGGGHIREV_					0	0	0			REV__ENSG00000049167|ENST00000676185|ERCC8	REV__ENSG00000049167|ENST00000676185|ERCC8	MULTI-SECPEP	A375_MHC_IP_R1	1	525.709228515625	2	526.285797	1050.55704	-0.79325	-0.00041748	0.8129	0.00042782	0.019643	1.0338E-05	526.2861523586911	137.51	0.25505	137.51	137.39	137.64	0					7	4	2	0	0	0	0.91442	1	52953	52953		7.609	1.4032	1	2064400	+		37036	16378	27077	27299	36065	36065					0.03378492906290376
NIGKHKVLPA	10	Unmodified	_NIGKHKVLPA_					0	0	0		ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	MULTI-MSMS	A375_MHC_IP_R1	1	539.3818969726562	2	538.832383	1075.65021	-0.70246	-0.00037851	0.18376	9.9016E-05	-0.5187	-0.00027949	538.8324324596049	58.168	0.45545	58.168	57.923	58.379	0					18	8	3	0	0	0	0.71245	1	20905	20905		6.7232	0	1	3502000			37037	1709	27078	27300	36066	36066					0.11541417359512707
NIGKHKVLPA	10	Unmodified	_NIGKHKVLPA_					0	0	0		ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	538.832383	1075.65021	-0.70246	-0.00037851	0.18376	9.9016E-05	-0.5187	-0.00027949	538.8324324596049	58.168	0.45545	58.168	57.923	58.379	0	0	0	NaN	6.7232	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3502000			37038	1709	27078	27300							0.11541417359512707
NIGSNYVY	8	Unmodified	_NIGSNYVY_					0	0	0		nc|ENSG00000211648|P01700|IGLV1-47	nc|ENSG00000211648|P01700|IGLV1-47	nc|ENSG00000211648|P01700|IGLV1-47	MULTI-MSMS	A375_MHC_IP_R1	1	465.6217956542969	2	465.2218	928.429047	-0.18302	-8.5145E-05	1.6523	0.00076869	1.4693	0.00068354	465.2227200646419	57.185	0.86683	57.185	56.701	57.568	0					22	16	2	0	0	0	0.74466	1	20508	20508		21.747	0.20967	1	3312200			37039	14871	27079	27301	36067	36067					-0.03803067407625349
NIHDGSIYGK	10	Unmodified	_NIHDGSIYGK_					0	0	0			REV__nc|ENSG00000137821|Q8IUZ0-3|LRRC49	REV__nc|ENSG00000137821|Q8IUZ0-3|LRRC49	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1506958007812	2	552.277638	1102.54072	-0.7383	-0.00040775	-0.22974	-0.00012688	-0.96804	-0.00053463	552.2778160302254	42.01	0.30662	42.785	42.555	42.862	0.77451					8	5	2	0	0	0	0.87163	1	15604	15604		9.3831	0	1	1201800	+		37040	27250	27080	27302	36068	36068					-0.0064463305047866015
NIINDIWGLQ	10	Unmodified	_NIINDIWGLQ_					0	0	0		tr|U7SZF8|U7SZF8_FUSNUDihydropteroatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00814PE=3SV=1	tr|U7SZF8|U7SZF8_FUSNUDihydropteroatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00814PE=3SV=1	tr|U7SZF8|U7SZF8_FUSNUDihydropteroatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00814PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	396.2559509277344	3	395.880267	1184.61897	-0.29809	-0.00011801	0.49885	0.00019749	0.20077	7.9479E-05	395.8803934589919	26.887	0.81786	27.547	27.313	28.131	0.65992					38	15	3	0	0	0	0.71076	1	9297	9297		7.4771	0	1	23044000			37041	29860	27081	27303	36069	36069					0.034047995347464166
NIINFIKIPP	10	Unmodified	_NIINFIKIPP_					0	0	0			REV__ENSG00000249715|ENST00000624922|FER1L5	REV__ENSG00000249715|ENST00000624922|FER1L5	MULTI-SECPEP	A375_MHC_IP_R1	1	585.2581176757812	2	584.858067	1167.70158	0.10775	6.3019E-05	-0.60393	-0.00035321	-0.49618	-0.00029019	584.857779344474	127.46	0.35432	127.46	127.32	127.67	0					9	6	2	0	0	0	0.93961	1	48890	48890		3.2813	0	1	8550400	+		37042	22838	27082	27304	36070	36070					0.12443741333549951
NIIPRFVQV	9	Unmodified	_NIIPRFVQV_					0	0	0		nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;ENSG00000171943|ENST00000367123|SRGAP2C;ENSG00000266028|ENST00000573034|SRGAP2	nc|ENSG00000196369|P0DMP2|SRGAP2B	nc|ENSG00000196369|P0DMP2|SRGAP2B	MULTI-SECPEP	A375_MHC_IP_R1	1	543.7261962890625	2	543.326934	1084.63931	-0.58183	-0.00031612	-0.085433	-4.6418E-05	-0.66726	-0.00036254	543.3268598474682	93.865	0.81087	93.865	93.329	94.14	0					34	15	3	0	0	0	0.14422	1	34471	34471		61.357	27.255	1	11752000			37043	7661	27083	27305	36071	36071					0.10038014985207155
NIIPRFVQV	9	Unmodified	_NIIPRFVQV_					0	0	0		nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;ENSG00000171943|ENST00000367123|SRGAP2C;ENSG00000266028|ENST00000573034|SRGAP2	nc|ENSG00000196369|P0DMP2|SRGAP2B	nc|ENSG00000196369|P0DMP2|SRGAP2B	MULTI-SECPEP	A375_MHC_IP_R2	2	543.726318359375	2	543.326934	1084.63931	-0.73847	-0.00040123	0.40205	0.00021844	-0.33642	-0.00018279	543.3270546959644	93.031	0.76227	93.77	93.443	94.205	0.73902					34	14	4	0	0	0	0.064992	1	35338	35338		78.149	56.403	1	12292000			37044	7661	27083	27305	36072	36072					0.10038014985207155
NIIQPQKEQRL	11	Unmodified	_NIIQPQKEQRL_					0	0	0			REV__ENSG00000182791|ENST00000333861|CCDC87	REV__ENSG00000182791|ENST00000333861|CCDC87	MULTI-SECPEP	A375_MHC_IP_R1	1	684.24169921875	2	683.8937	1365.77285	-0.85776	-0.00058662	-0.7618	-0.00052099	-1.6196	-0.0011076	683.8934383715456	131.5	0.70638	131.5	131.13	131.83	0					17	13	2	0	0	0	0.99985	1	50779	50779		1.0715	0	1	1650100	+		37045	21709	27084	27306	36073	36073					0.10459209300256589
NIITTKLAN	9	Unmodified	_NIITTKLAN_					0	0	0			REV__tr|U7T016|U7T016_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00853PE=4SV=1	REV__tr|U7T016|U7T016_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00853PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1851501464844	2	494.295299	986.576045	-0.41372	-0.0002045	0.66432	0.00032837	0.25059	0.00012387	494.2955323222219	64.223	0.8146	64.963	64.699	65.513	0.74022					18	15	2	0	0	0	0.59098	1	24390	24390		21.537	14.248	1	1468600	+		37046	28664	27085	27307	36074	36074					0.08222029477315118
NIIYSLEVT	9	Unmodified	_NIIYSLEVT_					0	0	0			REV__nc|ENSG00000121753|O60241-4|ADGRB2	REV__nc|ENSG00000121753|O60241-4|ADGRB2	MULTI-SECPEP	A375_MHC_IP_R1	1	526.18408203125	2	526.28714	1050.55973	-0.35002	-0.00018421	-0.29352	-0.00015448	-0.64354	-0.00033869	526.2868664462577	79.13	1.3232	79.13	78.556	79.879	0					48	25	3	0	0	0	0.55359	1	28756	28756		15.847	0	1	11243000	+		37047	18171	27086	27308	36075	36075					0.03646903520575506
NIKAKVNR	8	Unmodified	_NIKAKVNR_					0	0	0		ENST00000498228.1_1_1:55014277-55063089:+|nuORF;ENSG00000162390|ENST00000343744|ACOT11;nc|ENSG00000162390|Q8WXI4|ACOT11	ENST00000498228.1_1_1:55014277-55063089:+|nuORF	ENST00000498228.1_1_1:55014277-55063089:+|nuORF	MSMS	A375_MHC_IP_R2	2	471.7159423828125	2	471.795801	941.577048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.109	1	51.863	51.363	52.363	0.75406								0	0	0	0.16876	1	19231	19231		12.532	2.3482	1				37048	6524	27087	27309	36076	36076					0.10392288636899139
NIKDHRNI	8	Unmodified	_NIKDHRNI_					0	0	0			REV__ENSG00000233232|ENST00000452313|NPIPB7;REV__ENSG00000254206|ENST00000698511|NPIPB11	REV__ENSG00000254206|ENST00000698511|NPIPB11	MSMS	A375_MHC_IP_R1	1	505.1951599121094	2	505.280515	1008.54648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.359	1	28.359	27.859	28.859	0								0	0	0	0.16876	1	8737	8737		24.021	2.2739	1		+		37049	22198;22862	27088	27310	36077	36077					0.04254510251837473
NIKGYGRK	8	Unmodified	_NIKGYGRK_					0	0	0			REV__ENST00000461513.1_1_17:49579856-49580498:-|nuORF	REV__ENST00000461513.1_1_17:49579856-49580498:-|nuORF	MSMS	A375_MHC_IP_R1	1	468.1884765625	2	468.274701	934.534849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.7	1	127.7	127.2	128.2	0								0	0	0	0.16876	1	48984	48984		19.439	1.304	1		+		37050	19598	27089	27311	36078	36078					0.06496313228524286
NIKKQCCKMRK	11	Unmodified	_NIKKQCCKMRK_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.P3283Nfs*30|1|0.22|ENSG00000118058|chr11:118505746-118505767|TCCCCAACATCATAAAAAGATC/-|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MSMS	A375_MHC_IP_R1	1	690.4688110351562	2	690.375252	1378.73595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.142	1	80.142	79.642	80.642	0								0	0	0	0.16249	1	29259	29259		5.7319	0.83484	1				37051	3522	27090	27312	36079	36079					0.06173174886839661
NIKLDQIW	8	Unmodified	_NIKLDQIW_					0	0	0			REV__nc|ENSG00000138376|Q99728-2|BARD1	REV__nc|ENSG00000138376|Q99728-2|BARD1	MULTI-SECPEP	A375_MHC_IP_R1	1	515.1488647460938	2	515.290017	1028.56548	-0.90796	-0.00046786	0.56678	0.00029205	-0.34118	-0.00017581	515.2902415374699	68.193	0.76	68.193	67.754	68.514	0					24	14	2	0	0	0	0.91495	1	24797	24797		7.9102	3.9658	1	3935600	+		37052	19091	27091	27313	36080	36080					0.05234046822897653
NIKLMCRLI	9	Unmodified	_NIKLMCRLI_					0	0	0			REV__ENST00000392396.7_2_3:195798352-195799015:-|nuORF	REV__ENST00000392396.7_2_3:195798352-195799015:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	552.1511840820312	2	552.325022	1102.63549	-0.35851	-0.00019802	1.6407	0.00090621	1.2822	0.00070819	552.3266119644644	42.64	0.5059	42.64	42.487	42.993	0					19	9	3	0	0	0	0.43707	1	14811	14811		15.847	1.9411	1	1370300	+		37053	24271	27092	27314	36081	36081					0.08827885895493637
NIKSEGKGSSR	11	Unmodified	_NIKSEGKGSSR_					0	0	0		nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27;nc|ENSG00000184465|A2RRH5-2|WDR27;ENST00000546525.5_1_6:170034618-170062491:-|nuORF	nc|ENSG00000184465|A2RRH5|WDR27	nc|ENSG00000184465|A2RRH5|WDR27	MSMS	A375_MHC_IP_R1	1	388.25830078125	3	388.210676	1161.6102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.483	1	22.483	21.983	22.983	0								0	0	0	0.16112	1	6041	6041		7.4291	2.3816	1				37054	8587	27093	27315	36082	36082					0.03585825898312578
NILDARVQ	8	Unmodified	_NILDARVQ_					0	0	0		ENSG00000139572|ENST00000267015|GPR84	ENSG00000139572|ENST00000267015|GPR84	ENSG00000139572|ENST00000267015|GPR84	MULTI-MSMS	A375_MHC_IP_R1	1	465.1822204589844	2	464.764166	927.513779	-0.18792	-8.734E-05	-0.39065	-0.00018156	-0.57857	-0.0002689	464.7640037707673	33.501	0.35592	33.501	33.342	33.698	0					10	6	2	0	0	0	0.74945	1	11005	11005		20.454	3.5113	1	1617000			37055	5086	27094	27316	36083	36083					0.04712303128997064
NILFRGTW	8	Unmodified	_NILFRGTW_					0	0	0			REV__GRIN3A|p.M746I|1|0.75|ENSG00000198785|chr9:101670174-101670174|C/T|missense_variant	REV__GRIN3A|p.M746I|1|0.75|ENSG00000198785|chr9:101670174-101670174|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	503.6795349121094	2	503.777077	1005.5396	-0.29095	-0.00014657	-0.38294	-0.00019292	-0.67389	-0.00033949	503.7773818438974	97.414	2.0307	97.414	96.12	98.151	0					95	39	6	0	0	0	0.7338	1	35920	35920		24.674	5.4169	1	32593000	+		37056	26715	27095	27317	36084	36084					0.03705197371277791
NILFSPLSI	9	Unmodified	_NILFSPLSI_					0	0	0		ENSG00000163536|ENST00000446050|SERPINI1	ENSG00000163536|ENST00000446050|SERPINI1	ENSG00000163536|ENST00000446050|SERPINI1	MULTI-SECPEP	A375_MHC_IP_R1	1	502.69451904296875	2	502.294768	1002.57498	-0.34245	-0.00017201	0.095017	4.7726E-05	-0.24743	-0.00012428	502.29465415477495	104.37	0.91363	104.37	104.08	104.99	0					38	17	4	0	0	0	0.059859	1	38305	38305		71.922	0	1	6990800			37057	6680	27096	27318	36085	36085					0.07379815108436105
NILIERRNV	9	Unmodified	_NILIERRNV_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	A375_MHC_IP_R2	2	375.9292907714844	3	376.22789	1125.66184	-0.020439	-7.6898E-06	-0.76489	-0.00028777	-0.78532	-0.00029546	376.22767525556895	18.967	0.24981	19.57	19.483	19.733	0.60308					8	4	2	0	0	0	0.80535	1	5743	5743		2.2828	0	1	1935300	+		37058	21320	27097	27319	36086	36086					0.10403614382857995
NILKYLKIK	9	Unmodified	_NILKYLKIK_					0	0	0		tr|U7STL0|U7STL0_FUSNUSporephotoproductlyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01098PE=4SV=1	tr|U7STL0|U7STL0_FUSNUSporephotoproductlyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01098PE=4SV=1	tr|U7STL0|U7STL0_FUSNUSporephotoproductlyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01098PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	1132.4832763671875	1	1132.74524	1131.73797	0.067188	7.6107E-05	-0.16475	-0.00018662	-0.097561	-0.00011051	1133.742950558726	106.73	0.35578	107.49	107.29	107.65	0.75977					12	6	3	0	0	0	0.78348	1	40314	40314		4.3292	0	1	1314100			37059	29705	27098	27320	36087	36087					0.1773661823024213
NILLFIGT	8	Unmodified	_NILLFIGT_					0	0	0			REV__nc|ENSG00000144357|Q6ZT12-3|UBR3	REV__nc|ENSG00000144357|Q6ZT12-3|UBR3	MULTI-SECPEP	A375_MHC_IP_R1	1	445.3268737792969	2	445.770929	889.527304	-0.035144	-1.5666E-05	3.2018	0.0014272	3.1666	0.0014116	445.7726675680282	33.976	0.40569	33.976	33.748	34.154	0					11	7	2	0	0	0	0.972	1	11222	11222		4.756	0	1	1605400	+		37060	19419	27099	27321	36088	36088					0.07812160908247279
NILLFIGT	8	Unmodified	_NILLFIGT_					0	0	0			REV__nc|ENSG00000144357|Q6ZT12-3|UBR3	REV__nc|ENSG00000144357|Q6ZT12-3|UBR3	MULTI-MATCH	A375_MHC_IP_R2	2		2	445.770929	889.527304	-0.54587	-0.00024333	4.0299	0.0017964	3.484	0.0015531	445.772539805977	33.114	0.30551	33.866	33.737	34.043	0.75225	-0.055045	0.00016396	NaN	4.756	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1931200	+		37061	19419	27099	27321							0.07812160908247279
NILMDMSPF	9	Unmodified	_NILMDMSPF_					0	0	0			REV__ENST00000531381.1_1_11:121962050-121962143:-|nuORF	REV__ENST00000531381.1_1_11:121962050-121962143:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	534.6795043945312	2	534.248646	1066.48274	-0.48463	-0.00025891	-1.5752	-0.00084155	-2.0598	-0.0011005	534.246676313136	78.805	0.35442	78.805	78.707	79.061	0					8	6	2	0	0	0	0.78348	1	28740	28740		0.45834	0	1	654110	+		37062	25850	27100	27322	36089	36089					-0.047843542917689774
NILNVCCGIV	10	Unmodified	_NILNVCCGIV_					0	0	0			REV__ENST00000602506.5_1_16:67760333-67793575:-|nuORF	REV__ENST00000602506.5_1_16:67760333-67793575:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	524.2393798828125	2	524.269912	1046.52527	-0.53293	-0.0002794	-2.5337	-0.0013284	-3.0667	-0.0016078	524.268872687477	77.597	0.35485	78.34	78.165	78.52	0.74293					9	6	2	0	0	0	0.66712	1	29530	29530		15.847	0.078963	1	956510	+		37063	19244	27101	27323	36090	36090					0.0038704083644915954
NILRFQDL	8	Unmodified	_NILRFQDL_					0	0	0		MYH2|p.L1870F|1|0.11|ENSG00000125414|chr17:10523155-10523155|G/A|missense_variant	MYH2|p.L1870F|1|0.11|ENSG00000125414|chr17:10523155-10523155|G/A|missense_variant	MYH2|p.L1870F|1|0.11|ENSG00000125414|chr17:10523155-10523155|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	509.7034606933594	2	509.787641	1017.56073	-0.64293	-0.00032776	0.38844	0.00019802	-0.25449	-0.00012973	509.787631990902	90.703	0.50589	91.438	91.211	91.717	0.7345					14	9	2	0	0	0	0.8957	1	34593	34593		15.847	0	1	1170600			37064	14432	27102	27324	36091	36091					0.05265162680132107
NILTNELISI	10	Unmodified	_NILTNELISI_					0	0	0			REV__PCDH9|p.P152L|1|0.3|ENSG00000184226|chr13:67227986-67227986|G/A|missense_variant	REV__PCDH9|p.P152L|1|0.3|ENSG00000184226|chr13:67227986-67227986|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	376.9447937011719	3	377.22029	1128.63904	-0.048926	-1.8456E-05	1.0638	0.0004013	1.0149	0.00038285	377.22060419587154	56.156	0.51038	56.906	56.642	57.152	0.75014					14	9	2	0	0	0	0.87163	1	21253	21253		3.0723	1.33	1	1055100	+		37065	27729	27103	27325	36092	36092					0.07986550474720389
NIMTSEDKDAK	11	Unmodified	_NIMTSEDKDAK_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-2|PRR14L	REV__nc|ENSG00000183530|Q5THK1-2|PRR14L	MSMS	A375_MHC_IP_R1	1	626.6976928710938	2	626.29791	1250.58127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.26	1	30.26	29.76	30.76	0								0	0	0	0.16097	1	9592	9592		13.615	1.0833	1		+		37066	21762	27104	27326	36093	36093					-0.034000795130168626
NINDDKHTL	9	Unmodified	_NINDDKHTL_					0	0	0			REV__MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant	REV__MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	535.666748046875	2	535.26727	1068.51999	-0.75822	-0.00040585	-0.36493	-0.00019533	-1.1232	-0.00060119	535.2671253200368	47.073	2.2322	47.073	45.89	48.122	0					75	43	2	0	0	0	0.17338	1	16533	16533		39.95	8.6814	1	5827300	+		37067	19879	27105	27327	36094	36094					-0.01153223430151229
NINKKDPF	8	Unmodified	_NINKKDPF_					0	0	0			REV__ENST00000588191.5_3_18:11897592-11905871:-|nuORF	REV__ENST00000588191.5_3_18:11897592-11905871:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	488.7027282714844	2	488.266542	974.51853	-0.70069	-0.00034212	-2.6879	-0.0013124	-3.3886	-0.0016545	488.2653265796089	44.879	0.3084	45.648	45.492	45.8	0.7691					8	5	2	0	0	0	0.7754	1	16797	16797		11.64	1.4569	1	1223400	+		37068	26412	27106	27328	36095	36095					0.030251872717599326
NINLLPGTSQ	10	Unmodified	_NINLLPGTSQ_					0	0	0		ENST00000298119.8_1_14:42076845-42077079:+|nuORF	ENST00000298119.8_1_14:42076845-42077079:+|nuORF	ENST00000298119.8_1_14:42076845-42077079:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	529.1366577148438	2	528.787838	1055.56112	-0.44519	-0.00023541	-0.41771	-0.00022088	-0.8629	-0.00045629	529.2881520385858	68.74	0.75994	69.475	69.07	69.83	0.73511					29	14	3	0	0	0	0.71464	1	25990	25990		16.566	0	1	3374400			37069	10521	27107	27329	36096	36096					0.03556537609347288
NINTLTPFRP	10	Unmodified	_NINTLTPFRP_					0	0	0			REV__ENSG00000198786|ENST00000361567|MT-ND5	REV__ENSG00000198786|ENST00000361567|MT-ND5	MULTI-SECPEP	A375_MHC_IP_R2	2	391.6121520996094	3	391.552262	1171.63496	-0.0078061	-3.0565E-06	0.82935	0.00032473	0.82155	0.00032168	391.8870500444255	46.763	0.50821	47.525	47.258	47.766	0.76127					12	9	2	0	0	0	0.87043	1	17540	17540		17.863	15.58	1	914280	+		37070	22417	27108	27330	36097	36097					0.056005057716674855
NINYRRRREIL	11	Unmodified	_NINYRRRREIL_					0	0	0			REV__nc|ENSG00000105967|O14948-3|TFEC	REV__nc|ENSG00000105967|O14948-3|TFEC	MULTI-MSMS	A375_MHC_IP_R1	1	752.8368530273438	2	751.936765	1501.85898	-0.867	-0.00065193	-0.69992	-0.0005263	-1.5669	-0.0011782	751.9361168196161	143.15	0.45305	143.15	142.79	143.24	0					20	8	3	0	0	0	0.73924	1	54900	54900		0.35063	0	1	1395600	+		37071	17421	27109	27331	36098	36098					0.12812213925644755
NINYTGNME	9	Unmodified	_NINYTGNME_					0	0	0		tr|U7T1Q1|U7T1Q1_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00530PE=4SV=1	tr|U7T1Q1|U7T1Q1_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00530PE=4SV=1	tr|U7T1Q1|U7T1Q1_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00530PE=4SV=1	MSMS	A375_MHC_IP_R2	2	528.2055053710938	2	528.226756	1054.43896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.465	1	75.203	74.703	75.703	0.73752								0	0	0	0.15486	1	28265	28265		13.042	0.51092	1				37072	29909	27110	27332	36099	36099					-0.08608247464553642
NIPPLTQTPV	10	Unmodified	_NIPPLTQTPV_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	A375_MHC_IP_R1	1	540.8763427734375	2	540.308406	1078.60226	-0.8452	-0.00045667	0.254	0.00013724	-0.5912	-0.00031943	540.3086538904499	85.794	1.2161	85.794	85.261	86.477	0					41	23	2	0	0	0	0.33265	1	31556	31556		38.176	11.907	1	2361100		+	37073	582	27111	27333	36100	36100					0.06610298648797652
NIPPLTQTPV	10	Unmodified	_NIPPLTQTPV_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-SECPEP	A375_MHC_IP_R2	2	540.7078857421875	2	540.308406	1078.60226	-0.7162	-0.00038697	0.2254	0.00012179	-0.4908	-0.00026518	540.3085586227103	84.789	1.1698	85.525	85.171	86.341	0.73602					42	22	2	0	0	0	0.54012	1	32409	32409		38.615	10.986	1	1976100		+	37074	582	27111	27333	36101	36101					0.06610298648797652
NIPRVYHTL	9	Unmodified	_NIPRVYHTL_					0	0	0			REV__nc|ENSG00000108021|Q5VWN6-2|TASOR2	REV__nc|ENSG00000108021|Q5VWN6-2|TASOR2	MULTI-SECPEP	A375_MHC_IP_R1	1	371.9171142578125	3	371.545219	1111.61383	0.24972	9.2781E-05	3.7682	0.0014001	4.0179	0.0014928	371.547338941765	27.509	0.30274	27.509	27.331	27.634	0					12	5	3	0	0	0	0.80005	1	8399	8399		0	0	1	2620700	+		37075	17510	27112	27334	36102	36102					0.06248540462820529
NIPYENFY	8	Unmodified	_NIPYENFY_					0	0	0		ENST00000513085.1_1_5:95728707-95748688:-|nuORF;nc|ENSG00000175426|P29120-2|PCSK1;ENSG00000175426|ENST00000311106|PCSK1	ENST00000513085.1_1_5:95728707-95748688:-|nuORF	ENST00000513085.1_1_5:95728707-95748688:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	530.6427612304688	2	530.242732	1058.47091	-0.51979	-0.00027561	0.78931	0.00041852	0.26952	0.00014291	530.2430588792586	102.11	0.9597	102.11	101.7	102.66	0					33	18	2	0	0	0	0.7256	1	37479	37479		26.884	26.884	1	6215300			37076	7959	27113	27335	36103	36103					-0.055985117190857636
NIPYPIPYRDE	11	Unmodified	_NIPYPIPYRDE_					0	0	0		ENST00000605862.4_1_7:128214806-128231910:+|nuORF;ENST00000479267.2_3_7:128218036-128231910:+|nuORF	ENST00000605862.4_1_7:128214806-128231910:+|nuORF	ENST00000605862.4_1_7:128214806-128231910:+|nuORF	MSMS	A375_MHC_IP_R1	1	688.657470703125	2	688.845884	1375.67722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.09	1	126.09	125.59	126.59	0								0	0	0	0.15837	1	48111	48111		15.248	7.093	1				37077	12470	27114	27336	36104	36104					0.004404363893854679
NIQKDYVF	8	Unmodified	_NIQKDYVF_					0	0	0		nc|ENSG00000152767|Q9Y4F1-2|FARP1;ENSG00000152767|ENST00000319562|FARP1;ENST00000594346.1_1_13:99098688-99099072:+|nuORF	nc|ENSG00000152767|Q9Y4F1-2|FARP1	nc|ENSG00000152767|Q9Y4F1-2|FARP1	MULTI-SECPEP	A375_MHC_IP_R1	1	513.6484375	2	513.766374	1025.5182	-0.63703	-0.00032728	-0.1891	-9.7153E-05	-0.82613	-0.00042444	513.7661209461507	86.844	0.5062	86.844	86.679	87.186	0					12	9	2	0	0	0	0.92867	1	31946	31946		24.021	4.5816	1	1474200			37078	5982	27115	27337	36105	36105					0.0064576755189591495
NIRGPVWS	8	Unmodified	_NIRGPVWS_					0	0	0		ENSG00000129204|ENST00000574788|USP6;nc|ENSG00000129204|P35125-3|USP6;ENST00000357482.5_1_17:5035679-5037292:+|nuORF	ENSG00000129204|ENST00000574788|USP6	ENSG00000129204|ENST00000574788|USP6	MSMS	A375_MHC_IP_R2	2	464.6535949707031	2	464.753601	927.49265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.88	1	114.59	114.09	115.09	0.70985								0	0	0	0.16876	1	42942	42942		4.756	0	1				37079	4181	27116	27338	36106	36106					0.026003378201494343
NIRVMQLAL	9	Unmodified	_NIRVMQLAL_					0	0	0		ENST00000511334.1_1_5:64872783-64879053:+|nuORF;nc|ENSG00000113593|Q96BP3-2|PPWD1;ENSG00000113593|ENST00000261308|PPWD1	ENST00000511334.1_1_5:64872783-64879053:+|nuORF	ENST00000511334.1_1_5:64872783-64879053:+|nuORF	MSMS	A375_MHC_IP_R2	2	529.2236328125	2	529.312969	1056.61138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.831	1	80.575	80.075	81.075	0.74474								0	0	0	0.15071	1	30303	30303		28.487	11.545	1				37080	3164	27117	27339	36107	36107					0.08534368733489828
NISIGNNGAGY	11	Unmodified	_NISIGNNGAGY_					0	0	0			REV__ENST00000527983.5_1_11:122930124-122932032:-|nuORF	REV__ENST00000527983.5_1_11:122930124-122932032:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	539.6820068359375	2	540.259445	1078.50434	-0.84299	-0.00045543	-0.10424	-5.6319E-05	-0.94723	-0.00051175	540.2583499171623	76.875	0.76128	77.618	76.996	77.757	0.74293					20	14	2	0	0	0	0.88813	1	29191	29191		19.362	9.9788	1	1079500	+		37081	25797	27118	27340	36108	36108					-0.03177509947181534
NISKEEKRKKL	11	Unmodified	_NISKEEKRKKL_					0	0	0		ABCB7|p.E732K|1|0.6|ENSG00000131269|chrX:75053435-75053435|C/T|missense_variant	ABCB7|p.E732K|1|0.6|ENSG00000131269|chrX:75053435-75053435|C/T|missense_variant	ABCB7|p.E732K|1|0.6|ENSG00000131269|chrX:75053435-75053435|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	687.0863647460938	2	686.917175	1371.8198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.24	1	126.53	126.03	127.03	0.2951								0	0	0	0.16213	1	49375	49375		7.609	1.8771	1				37082	11	27119	27341	36109	36109					0.14876068851413038
NISKNKRIY	9	Unmodified	_NISKNKRIY_					0	0	0			REV__tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	REV__tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	MSMS	A375_MHC_IP_R2	2	379.29217529296875	3	379.224257	1134.65094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.907	1	23.537	23.037	24.037	0.63014								0	0	0	0.15486	1	7305	7305		10.8	0.64894	1		+		37083	28411	27120	27342	36110	36110					0.08900212008575181
NISQYESY	8	Unmodified	_NISQYESY_					0	0	0			REV__nc|ENSG00000198715|Q8WWB7-2|GLMP	REV__nc|ENSG00000198715|Q8WWB7-2|GLMP	MULTI-MSMS	A375_MHC_IP_R1	1	502.70501708984375	2	502.221997	1002.42944	-0.45162	-0.00022682	-0.27209	-0.00013665	-0.72371	-0.00036347	502.2218919074155	58.587	0.50778	58.587	58.379	58.887	0					15	9	2	0	0	0	0.77624	1	21051	21051		8.5933	0.68312	1	843770	+		37084	22400	27121	27343	36111	36111					-0.07167692478424215
NISVHWSWWRE	11	Unmodified	_NISVHWSWWRE_					0	0	0		NKAIN3|p.R104W|1|0.34|ENSG00000185942|chr8:62746968-62746968|C/T|missense_variant	NKAIN3|p.R104W|1|0.34|ENSG00000185942|chr8:62746968-62746968|C/T|missense_variant	NKAIN3|p.R104W|1|0.34|ENSG00000185942|chr8:62746968-62746968|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	500.4745788574219	3	500.57747	1498.71058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.35	1	91.082	90.582	91.582	0.73181								0	0	0	0.16316	1	34377	34377		0.92553	0.41958	1				37085	14996	27122	27344	36112	36112					-0.01882517048079535
NITAKGITDY	10	Unmodified	_NITAKGITDY_					0	0	0		nc|ENSG00000153956|P54289-4|CACNA2D1;nc|ENSG00000153956|P54289-5|CACNA2D1;nc|ENSG00000153956|P54289-3|CACNA2D1;ENSG00000153956|ENST00000356860|CACNA2D1;nc|ENSG00000153956|P54289|CACNA2D1;ENST00000492734.1_1_7:81641460-81667482:-|nuORF	nc|ENSG00000153956|P54289-4|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	MULTI-MSMS	A375_MHC_IP_R1	1	549.7188720703125	2	548.287671	1094.56079	-0.66271	-0.00036335	-1.867	-0.0010237	-2.5298	-0.001387	548.2874224620376	27.213	0.50483	27.213	26.978	27.482	0					23	8	5	0	0	0	0.70012	1	8289	8289		12.241	2.1667	1	8841100			37086	6051	27123	27345	36113	36113					0.01729117889499321
NITDVEPV	8	Unmodified	_NITDVEPV_					0	0	0			REV__ENST00000337488.10_2_4:54325632-54325692:+|nuORF	REV__ENST00000337488.10_2_4:54325632-54325692:+|nuORF	MSMS	A375_MHC_IP_R2	2	443.6789855957031	2	443.729458	885.444362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.632	1	57.382	56.882	57.882	0.75015								0	0	0	0.16876	1	21409	21409		34.102	1.9855	1		+		37087	23692	27124	27346	36114	36114					-0.0029420061041491863
NITESQHML	9	Oxidation (M)	_NITESQHM(Oxidation (M))L_		NITESQHM(1)L		NITESQHM(42)L	0	0	1		nc|ENSG00000138798|P01133-3|EGF;ENSG00000138798|ENST00000265171|EGF;nc|ENSG00000138798|P01133-2|EGF;ENST00000509996.1_1_4:110902073-110932465:+|nuORF	nc|ENSG00000138798|P01133-3|EGF	nc|ENSG00000138798|P01133-3|EGF	MSMS	A375_MHC_IP_R2	2	544.68994140625	2	544.755681	1087.49681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.397	1	30.096	29.596	30.596	0.69872								0	0	0	0.099728	1	10258	10258		42.095	18.074	1				37088	5038	27125	27347	36115	36115		267			-0.04343985539117057
NITLPPVQ	8	Unmodified	_NITLPPVQ_					0	0	0			REV__nc|ENSG00000013619|Q13495-4|MAMLD1	REV__nc|ENSG00000013619|Q13495-4|MAMLD1	MULTI-MSMS	A375_MHC_IP_R1	1	441.6582336425781	2	441.258185	880.501818	-0.042891	-1.8926E-05	-0.20488	-9.0407E-05	-0.24778	-0.00010933	441.25805302549685	72.86	1.5211	72.86	72.474	73.995	0					78	29	4	0	0	0	0.47739	1	26458	26458		49.933	9.9757	1	41449000	+		37089	16238	27126	27348	36116	36116					0.05678686385806486
NITLPPVQ	8	Unmodified	_NITLPPVQ_					0	0	0			REV__nc|ENSG00000013619|Q13495-4|MAMLD1	REV__nc|ENSG00000013619|Q13495-4|MAMLD1	MULTI-MSMS	A375_MHC_IP_R2	2	441.6819152832031	2	441.258185	880.501818	-0.51595	-0.00022767	0.0045673	2.0154E-06	-0.51138	-0.00022565	441.25814131095507	72.182	1.4724	72.916	72.516	73.988	0.73421					78	28	4	0	0	0	0.47739	2	27497	27497;27560		49.933	7.8384	1	37434000	+		37090	16238	27126	27348	36117;36118	36117					0.05678686385806486
NITQQRQIY	9	Unmodified	_NITQQRQIY_					0	0	0			REV__ENST00000482953.5_1_21:42762449-42780157:+|nuORF	REV__ENST00000482953.5_1_21:42762449-42780157:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	581.7278442382812	2	582.312012	1162.60947	-0.27317	-0.00015907	-0.54412	-0.00031685	-0.81729	-0.00047592	582.311650154397	48.075	0.50219	48.836	48.632	49.134	0.76128					14	9	2	0	0	0	0.71541	1	18050	18050		11.64	4.5386	1	3871300	+		37091	21759	27127	27349	36119	36119					0.03467031249238062
NITRAAQHLS	10	Unmodified	_NITRAAQHLS_					0	0	0		ENSG00000132000|ENST00000588872|PODNL1;ENST00000586075.1_2_19:14044750-14048885:-|nuORF;ENST00000254320.7_1_19:14044750-14048840:-|nuORF;nc|ENSG00000132000|Q6PEZ8-2|PODNL1;nc|ENSG00000132000|Q6PEZ8-3|PODNL1;nc|ENSG00000132000|Q6PEZ8|PODNL1	ENSG00000132000|ENST00000588872|PODNL1	ENSG00000132000|ENST00000588872|PODNL1	MSMS	A375_MHC_IP_R2	2	555.7214965820312	2	555.804354	1109.59415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.64	1	111.38	110.88	111.88	0.73692								0	0	0	0.14804	1	41733	41733		21.537	0.66577	1				37092	4365	27128	27350	36120	36120					0.04374164452019613
NITRLYSLGKS	11	Unmodified	_NITRLYSLGKS_					0	0	0		nc|ENSG00000108582|O75976-2|CPD;ENSG00000108582|ENST00000225719|CPD;CPD|p.N755Lfs*3|1|0.17|ENSG00000108582|chr17:30442339-30442340|AA/-|frameshift_variant	nc|ENSG00000108582|O75976-2|CPD	nc|ENSG00000108582|O75976-2|CPD	MULTI-MSMS	A375_MHC_IP_R1	1	626.7557373046875	2	626.356419	1250.69829	-0.7405	-0.00046381	0.044784	2.8051E-05	-0.69571	-0.00043576	626.3563760771647	31.003	0.5079	31.003	30.754	31.262	0					29	9	4	0	0	0	0.62292	1	9891	9891		21.537	0	1	14314000			37093	2817	27129	27351	36121	36121					0.08296446488861875
NITRLYSLGKS	11	Unmodified	_NITRLYSLGKS_					0	0	0		nc|ENSG00000108582|O75976-2|CPD;ENSG00000108582|ENST00000225719|CPD;CPD|p.N755Lfs*3|1|0.17|ENSG00000108582|chr17:30442339-30442340|AA/-|frameshift_variant	nc|ENSG00000108582|O75976-2|CPD	nc|ENSG00000108582|O75976-2|CPD	MULTI-MSMS	A375_MHC_IP_R2	2	626.75634765625	2	626.356419	1250.69829	-0.82324	-0.00051564	-0.041872	-2.6227E-05	-0.86511	-0.00054187	626.3563693498681	30.388	0.45646	31.106	30.86	31.317	0.71857					24	8	4	0	0	0	0.57844	1	10656	10656		24.991	0	1	13018000			37094	2817	27129	27351	36122	36122					0.08296446488861875
NITRSDAGSY	10	Unmodified	_NITRSDAGSY_					0	0	0		ENSG00000134115|ENST00000446702|CNTN6	ENSG00000134115|ENST00000446702|CNTN6	ENSG00000134115|ENST00000446702|CNTN6	MSMS	A375_MHC_IP_R1	1	542.1715087890625	2	542.256902	1082.49925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.929	1	35.929	35.429	36.429	0								0	0	0	0.11901	1	11986	11986		39.95	5.8473	1				37095	4551	27130	27352	36123	36123					-0.03869813809819789
NITSYDNLF	9	Unmodified	_NITSYDNLF_					0	0	0		nc|ENSG00000119509|Q9Y283-2|INVS;ENSG00000119509|ENST00000262457|INVS	nc|ENSG00000119509|Q9Y283-2|INVS	nc|ENSG00000119509|Q9Y283-2|INVS	MSMS	A375_MHC_IP_R2	2	543.684326171875	2	543.758746	1085.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.258	1	62.003	61.503	62.503	0.74503								0	0	0	0.13472	1	23213	23213		31.268	8.6103	1				37096	3599	27131	27353	36124	36124					-0.03639144035969366
NIVEINTVTV	10	Unmodified	_NIVEINTVTV_					0	0	0			REV__ENST00000457750.1_1_3:195341833-195346985:+|nuORF	REV__ENST00000457750.1_1_3:195341833-195346985:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2264404296875	2	551.311146	1100.60774	-0.24181	-0.00013331	-0.48366	-0.00026665	-0.72547	-0.00039996	551.3107306045833	48.096	0.50605	48.096	47.92	48.426	0					13	9	2	0	0	0	0.63289	1	17005	17005		26.268	0	1	2477500	+		37097	21430	27132	27354	36125	36125					0.061459774406330325
NIVEKLREV	9	Unmodified	_NIVEKLREV_					0	0	0		nc|ENSG00000132256|Q9C035-2|TRIM5;ENSG00000132256|ENST00000380034|TRIM5;nc|ENSG00000132256|Q9C035-6|TRIM5;nc|ENSG00000132256|Q9C035-5|TRIM5;nc|ENSG00000132256|Q9C035-4|TRIM5;nc|ENSG00000132256|Q9C035-3|TRIM5	nc|ENSG00000132256|Q9C035-2|TRIM5	nc|ENSG00000132256|Q9C035-2|TRIM5	MULTI-SECPEP	A375_MHC_IP_R1	1	550.7271728515625	2	550.327131	1098.63971	-0.48329	-0.00026597	0.29359	0.00016157	-0.18971	-0.0001044	550.3272275292576	51.017	0.55692	51.017	50.713	51.27	0					27	10	4	0	0	0	0.30942	1	18080	18080		46.475	10.863	1	8610300			37098	4384	27133	27355	36126	36126					0.09433389914420331
NIVEKLREV	9	Unmodified	_NIVEKLREV_					0	0	0		nc|ENSG00000132256|Q9C035-2|TRIM5;ENSG00000132256|ENST00000380034|TRIM5;nc|ENSG00000132256|Q9C035-6|TRIM5;nc|ENSG00000132256|Q9C035-5|TRIM5;nc|ENSG00000132256|Q9C035-4|TRIM5;nc|ENSG00000132256|Q9C035-3|TRIM5	nc|ENSG00000132256|Q9C035-2|TRIM5	nc|ENSG00000132256|Q9C035-2|TRIM5	MULTI-SECPEP	A375_MHC_IP_R2	2	550.7265625	2	550.327131	1098.63971	-0.99332	-0.00054665	0.16932	9.3184E-05	-0.824	-0.00045347	550.3271898497304	50.126	0.5094	50.88	50.599	51.108	0.75406					24	9	4	0	0	0	0.14273	1	18813	18813		68.76	11.511	1	8513400			37099	4384	27133	27355	36127	36127					0.09433389914420331
NIVERLKEV	9	Unmodified	_NIVERLKEV_					0	0	0		nc|ENSG00000258659|Q9BYJ4-2|TRIM34;ENST00000491385.1_1_11:5653561-5662456:+|nuORF;ENSG00000258659|ENST00000429814|TRIM34	nc|ENSG00000258659|Q9BYJ4-2|TRIM34	nc|ENSG00000258659|Q9BYJ4-2|TRIM34	MULTI-SECPEP	A375_MHC_IP_R1	1	550.7266845703125	2	550.327131	1098.63971	-0.49255	-0.00027106	-0.45555	-0.0002507	-0.9481	-0.00052176	550.3268106312074	50.149	0.40914	50.149	49.947	50.357	0					16	7	3	0	0	0	0.11849	1	17784	17784		64.927	11.523	1	2268000			37100	9920	27134	27356	36128	36128					0.09433389914420331
NIVERLKEV	9	Unmodified	_NIVERLKEV_					0	0	0		nc|ENSG00000258659|Q9BYJ4-2|TRIM34;ENST00000491385.1_1_11:5653561-5662456:+|nuORF;ENSG00000258659|ENST00000429814|TRIM34	nc|ENSG00000258659|Q9BYJ4-2|TRIM34	nc|ENSG00000258659|Q9BYJ4-2|TRIM34	MULTI-SECPEP	A375_MHC_IP_R2	2	550.7264404296875	2	550.327131	1098.63971	-0.99235	-0.00054612	-0.015291	-8.4153E-06	-1.0076	-0.00055453	550.326880820173	49.162	0.40568	49.919	49.69	50.096	0.75737					13	7	2	0	0	0	0.09145	1	18500	18500		69.338	11.616	1	3275500			37101	9920	27134	27356	36129	36129					0.09433389914420331
NIVLYQKGQ	9	Unmodified	_NIVLYQKGQ_					0	0	0		nc|ENSG00000010219|Q9NR20-5|DYRK4;nc|ENSG00000010219|Q9NR20-2|DYRK4;nc|ENSG00000010219|Q9NR20|DYRK4;ENSG00000010219|ENST00000543431|DYRK4;nc|ENSG00000010219|Q9NR20-3|DYRK4;nc|ENSG00000010219|Q9NR20-4|DYRK4	nc|ENSG00000010219|Q9NR20-5|DYRK4	nc|ENSG00000010219|Q9NR20-5|DYRK4	MULTI-SECPEP	A375_MHC_IP_R2	2	531.1503295898438	2	531.800749	1061.58694	-0.60219	-0.00032024	0.74228	0.00039475	0.1401	7.4504E-05	531.8010528008307	70.175	0.20314	70.909	70.743	70.946	0.73421					5	3	2	0	0	0	0.71341	1	26611	26611		5.2969	0	1	1202900			37102	975	27135	27357	36130	36130					0.05861431851622001
NIVPKLTEV	9	Unmodified	_NIVPKLTEV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	A375_MHC_IP_R1	1	507.2052307128906	2	506.8055	1011.59645	0.14846	7.5239E-05	-0.27242	-0.00013807	-0.12397	-6.2827E-05	506.80525418655134	69.523	0.50806	69.523	69.224	69.732	0					14	9	2	0	0	0	0.28216	1	25273	25273		49.933	9.9833	1	1844900			37103	1916	27136	27358	36131	36131					0.0911120013714708
NIVPKLTEV	9	Unmodified	_NIVPKLTEV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	A375_MHC_IP_R2	2	507.2054443359375	2	506.8055	1011.59645	-0.6282	-0.00031838	0.38717	0.00019622	-0.24103	-0.00012216	506.8055944266757	68.625	0.60674	69.36	69.07	69.677	0.73512					14	11	2	0	0	0	0.28216	1	26043	26043		49.933	3.912	1	1868500			37104	1916	27136	27358	36132	36132					0.0911120013714708
NIVRLVKNNFK	11	Unmodified	_NIVRLVKNNFK_					0	0	0			REV__tr|U7SLQ9|U7SLQ9_FUSNUL-lysineexporterfamilyproteinLysE/ArgOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01862PE=3SV=1	REV__tr|U7SLQ9|U7SLQ9_FUSNUL-lysineexporterfamilyproteinLysE/ArgOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01862PE=3SV=1	MSMS	A375_MHC_IP_R2	2	672.8289184570312	2	672.909153	1343.80375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.62	1	143.65	143.15	144.15	0.024414								0	0	0	0.16302	1	56123	56123		2.9952	1.6657	1		+		37105	28275	27137	27359	36133	36133					0.14560407405156184
NIVRVIPSY	9	Unmodified	_NIVRVIPSY_					0	0	0		ENSG00000165695|ENST00000298545|AK8;ENST00000476719.1_1_9:135601077-135753754:-|nuORF;nc|ENSG00000165695|Q96MA6-2|AK8	ENSG00000165695|ENST00000298545|AK8	ENSG00000165695|ENST00000298545|AK8	MSMS	A375_MHC_IP_R2	2	531.2088012695312	2	530.811116	1059.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.05	1	127.31	126.81	127.81	0.26593								0	0	0	0.15486	1	49758	49758		7.2892	1.0834	1				37106	6981	27138	27360	36134	36134					0.08026022231297247
NIVYIHIRDKT	11	Unmodified	_NIVYIHIRDKT_					0	0	0		nc|ENSG00000162929|Q6NSI8-3|SANBR;nc|ENSG00000162929|Q6NSI8-2|SANBR;ENSG00000162929|ENST00000402291|SANBR	nc|ENSG00000162929|Q6NSI8-3|SANBR	nc|ENSG00000162929|Q6NSI8-3|SANBR	MSMS	A375_MHC_IP_R1	1	686.3073120117188	2	686.390793	1370.76703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.3	1	143.3	142.8	143.8	0								0	0	0	0.16307	1	54976	54976		2.7352	1.4057	1				37107	6616	27139	27361	36135	36135					0.09648110788589292
NIYDHTLKE	9	Unmodified	_NIYDHTLKE_					0	0	0			REV__ENSG00000091436|ENST00000375213|MAP3K20	REV__ENSG00000091436|ENST00000375213|MAP3K20	MSMS	A375_MHC_IP_R2	2	566.5608520507812	2	566.785296	1131.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.599	1	75.337	74.837	75.837	0.73752								0	0	0	0.15468	1	28315	28315		13.906	0	1		+		37108	16949	27140	27362	36136	36136					-0.004477662532735849
NIYLRKTKKKI	11	Unmodified	_NIYLRKTKKKI_					0	0	0			REV__ENSG00000092140|ENST00000206595|G2E3	REV__ENSG00000092140|ENST00000206595|G2E3	MULTI-MSMS	A375_MHC_IP_R2	2	703.3556518554688	2	702.956104	1403.89765	-0.52578	-0.0003696	-0.12411	-8.7247E-05	-0.64989	-0.00045685	702.9557222007671	143.74	0.35361	143.77	143.64	143.99	0.024414					8	6	2	0	0	0	0.73934	1	56198	56198		0	0	1	385310	+		37109	16963	27141	27363	36137	36137					0.21186126507427616
NIYYLVSGS	9	Unmodified	_NIYYLVSGS_					0	0	0		ENST00000388918.9_1_9:12709713-12709830:+|nuORF	ENST00000388918.9_1_9:12709713-12709830:+|nuORF	ENST00000388918.9_1_9:12709713-12709830:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	508.1681823730469	2	508.258382	1014.50221	-0.41003	-0.0002084	-0.34063	-0.00017313	-0.75066	-0.00038153	508.258193533464	74.679	0.45729	74.679	74.4	74.857	0					22	8	3	0	0	0	0.58271	1	27185	27185		26.884	9.9414	1	1167600			37110	11394	27142	27364	36138	36138					-0.004459386849816838
NKAFIGTAGQ	10	Unmodified	_NKAFIGTAGQ_					0	0	0			REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	504.6691589355469	2	503.769448	1005.52434	-1.0503	-0.00052912	-0.15908	-8.014E-05	-1.2094	-0.00060926	503.7696985250588	57.183	0.71436	57.933	57.662	58.376	0.75014					28	13	3	0	0	0	0.69871	1	21700	21700		12.873	0.63195	1	4301000	+		37111	28281	27143	27365	36139	36139					0.021802857834245515
NKDGSIDFNE	10	Unmodified	_NKDGSIDFNE_					0	0	0		nc|ENSG00000086717|O14829-5|PPEF1;nc|ENSG00000086717|O14829-2|PPEF1;nc|ENSG00000086717|O14829-3|PPEF1;ENSG00000086717|ENST00000470157|PPEF1	nc|ENSG00000086717|O14829-5|PPEF1	nc|ENSG00000086717|O14829-5|PPEF1	MULTI-MSMS	A375_MHC_IP_R2	2	570.1895751953125	2	569.754192	1137.49383	-0.76098	-0.00043357	-0.056246	-3.2046E-05	-0.81723	-0.00046562	569.7543584066625	25.225	0.45911	25.869	25.668	26.128	0.64368					11	8	2	0	0	0	0.70012	1	8365	8365		12.241	1.4167	1	2544200			37112	1845	27144	27366	36140	36140					-0.06941537392276587
NKDKSLVDI	9	Unmodified	_NKDKSLVDI_					0	0	0			REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	515.6859130859375	2	516.290214	1030.56587	-1.335	-0.00068925	0.23909	0.00012344	-1.0959	-0.00056581	516.2902567076495	53.472	0.35858	54.223	53.995	54.353	0.75105					10	6	2	0	0	0	0.50702	1	20227	20227		32.305	8.2849	1	2333300	+		37113	28309	27145	27367	36141	36141					0.051814217520814054
NKDTAITKF	9	Unmodified	_NKDTAITKF_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-SECPEP	A375_MHC_IP_R1	1	519.9856567382812	2	519.284931	1036.55531	-0.39383	-0.00020451	1.204	0.00062524	0.8102	0.00042073	519.2858308466822	72.532	0.76031	72.532	72.271	73.031	0					15	14	2	0	0	0	0.67483	1	26479	26479		20.454	7.4112	1	1331600			37114	8698	27146	27368	36142	36142					0.03849439097643881
NKEGIAQH	8	Unmodified	_NKEGIAQH_					0	0	0			REV__ENSG00000095777|ENST00000642920|MYO3A	REV__ENSG00000095777|ENST00000642920|MYO3A	MULTI-SECPEP	A375_MHC_IP_R1	1	896.6614990234375	1	896.458456	895.451179	-0.24802	-0.00022234	1.7111	0.001534	1.4631	0.0013116	896.458004833186	119.29	0.15007	119.29	119.18	119.33	0					4	2	2	0	0	0	0.95423	1	44037	44037		18.135	5.6034	1	4338900	+		37115	17000	27147	27369	36143	36143					-0.0007284293919838092
NKEKYRRMS	9	Unmodified	_NKEKYRRMS_					0	0	0		ENSG00000058335|ENST00000558480|RASGRF1;nc|ENSG00000058335|Q13972|RASGRF1;nc|ENSG00000058335|Q13972-2|RASGRF1;ENST00000560334.5_1_15:79271198-79356973:-|nuORF	ENSG00000058335|ENST00000558480|RASGRF1	ENSG00000058335|ENST00000558480|RASGRF1	MULTI-SECPEP	A375_MHC_IP_R1	1	404.94903564453125	3	404.548635	1210.62407	-0.18032	-7.2947E-05	-0.25895	-0.00010476	-0.43927	-0.00017771	404.5489210980012	45.476	0.50363	45.476	45.234	45.738	0					16	9	2	0	0	0	0.70759	1	15935	15935		15.739	2.866	1	2135200			37116	1292	27148	27370	36144	36144					0.027187801257241517
NKELTVEQF	9	Unmodified	_NKELTVEQF_					0	0	0			REV__nc|ENSG00000141562|Q9UHQ1-2|NARF	REV__nc|ENSG00000141562|Q9UHQ1-2|NARF	MULTI-SECPEP	A375_MHC_IP_R2	2	554.704833984375	2	554.287671	1106.56079	-0.82817	-0.00045904	-4.2904	-0.0023781	-5.1186	-0.0028372	554.7856713208868	32.66	0.71139	33.397	32.909	33.62	0.73691					19	13	3	0	0	0	0.39388	1	11517	11517		39.957	7.6518	1	2027900	+		37117	27266	27149	27371	36145	36145					0.011771178894605328
NKEQLIQMM	9	Unmodified	_NKEQLIQMM_					0	0	0			REV__ENST00000482953.5_1_21:42762449-42780157:+|nuORF	REV__ENST00000482953.5_1_21:42762449-42780157:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	567.7131958007812	2	567.785927	1133.5573	-0.35359	-0.00020076	-1.2988	-0.00073742	-1.6523	-0.00093818	568.2865438901929	73.91	0.66154	74.648	74.398	75.06	0.73752					17	12	2	0	0	0	0.17338	1	28114	28114		39.95	14.55	1	13332000	+		37118	21759	27150	27372	36146	36146					-0.004135914803782725
NKESDSPQV	9	Unmodified	_NKESDSPQV_					0	0	0			REV__nc|ENSG00000136111|O60343-3|TBC1D4	REV__nc|ENSG00000136111|O60343-3|TBC1D4	MULTI-MSMS	A375_MHC_IP_R1	1	502.16595458984375	2	502.238178	1002.4618	-0.3786	-0.00019015	1.3549	0.0006805	0.97634	0.00049036	502.2388027575315	74.242	0.60777	74.242	73.843	74.451	0					13	11	2	0	0	0	0.58047	1	27007	27007		15.847	1.0089	1	734370	+		37119	27243	27151	27373	36147	36147					-0.039329050754190575
NKFILRVDA	9	Unmodified	_NKFILRVDA_					0	0	0			REV__nc|ENSG00000197323|Q9UPN9-2|TRIM33	REV__nc|ENSG00000197323|Q9UPN9-2|TRIM33	MULTI-SECPEP	A375_MHC_IP_R2	2	359.30584716796875	3	359.213469	1074.61858	-0.33975	-0.00012204	0.26761	9.6129E-05	-0.072141	-2.5914E-05	359.21347608602946	39.302	0.66188	40.077	39.607	40.269	0.77451					20	12	2	0	0	0	0.775	1	14510	14510		10.8	2.644	1	1227900	+		37120	22278	27152	27374	36148	36148					0.08425424605570697
NKFITKDKRRR	11	Unmodified	_NKFITKDKRRR_					0	0	0		ENSG00000106031|ENST00000649031|HOXA13	ENSG00000106031|ENST00000649031|HOXA13	ENSG00000106031|ENST00000649031|HOXA13	MULTI-SECPEP	A375_MHC_IP_R2	2	730.870361328125	2	731.441683	1460.86881	-0.61953	-0.00045315	0.29557	0.00021619	-0.32397	-0.00023696	731.4416964325774	149.63	0.84442	149.65	149.16	150	0.018265					70	43	2	0	0	0	1.0015	1	58120	58120		0.26902	0.26902	1	100720			37121	2662	27153	27375	36149	36149					0.15681401930987704
NKGKQDELLRY	11	Unmodified	_NKGKQDELLRY_					0	0	0			REV__tr|U7SZK3|U7SZK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00782PE=4SV=1	REV__tr|U7SZK3|U7SZK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00782PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	455.6348876953125	3	455.249131	1362.72556	0.027395	1.2472E-05	-0.15756	-7.1729E-05	-0.13016	-5.9257E-05	455.2487757801466	21.631	0.71236	21.631	21.199	21.911	0					36	13	5	0	0	0	0.72883	1	5752	5752		10.016	2.1702	1	4484500	+		37122	28651	27154	27376	36150	36150					0.05870930029277588
NKGVEETKQC	10	Unmodified	_NKGVEETKQC_					0	0	0			REV__ENST00000482172.5_1_13:21205203-21245170:+|nuORF	REV__ENST00000482172.5_1_13:21205203-21245170:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	379.27667236328125	3	379.185251	1134.53392	0.26783	0.00010156	-0.38841	-0.00014728	-0.12057	-4.572E-05	379.18540009413584	40.101	0.81452	40.101	39.694	40.509	0					21	15	2	0	0	0	0.87163	1	13895	13895		12.175	1.2758	1	2036100	+		37123	25277	27155	27377	36151	36151					-0.027963139933717684
NKGYIRTF	8	Unmodified	_NKGYIRTF_					0	0	0		tr|U7SZ59|U7SZ59_FUSNUSodium/prolinesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00855PE=3SV=1	tr|U7SZ59|U7SZ59_FUSNUSodium/prolinesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00855PE=3SV=1	tr|U7SZ59|U7SZ59_FUSNUSodium/prolinesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00855PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	499.67437744140625	2	499.774534	997.534515	-0.18398	-9.195E-05	1.6887	0.00084396	1.5047	0.00075201	500.27776460429936	71.59	0.45168	71.59	71.313	71.765	0					10	8	2	0	0	0	0.77028	1	26029	26029		14.838	2.3067	1	1291900			37124	29854	27156	27378	36152	36152					0.03564893508666955
NKHAIRSYK	9	Unmodified	_NKHAIRSYK_					0	0	0			REV__tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1	REV__tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	373.2890625	3	372.880602	1115.61998	0.27186	0.00010137	0.62658	0.00023364	0.89844	0.00033501	373.2153177052567	24.775	0.30531	24.775	24.647	24.953	0					8	5	2	0	0	0	0.72623	1	7063	7063		13.615	9.6705	1	3402100	+		37125	28280	27157	27379	36153	36153					0.06679058694317064
NKHAIRSYK	9	Unmodified	_NKHAIRSYK_					0	0	0			REV__tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1	REV__tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	373.2889404296875	3	372.880602	1115.61998	0.1835	6.8423E-05	-0.29068	-0.00010839	-0.10718	-3.9965E-05	372.8802449974649	24.053	0.20405	24.697	24.602	24.806	0.64368					5	3	2	0	0	0	0.76106	1	7798	7798		9.544	0	1	1794900	+		37126	28280	27157	27379	36154	36154					0.06679058694317064
NKHNSICEG	9	Unmodified	_NKHNSICEG_					0	0	0			REV__tr|U7SQH7|U7SQH7_FUSNUProteinkinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01642PE=4SV=1	REV__tr|U7SQH7|U7SQH7_FUSNUProteinkinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01642PE=4SV=1	MSMS	A375_MHC_IP_R2	2	501.1983947753906	2	501.227091	1000.43963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.217	1	23.847	23.347	24.347	0.63014								0	0	0	0.15486	1	7434	7434		7.9102	0.62092	1		+		37127	28375	27158	27380	36155	36155					-0.060574080248329665
NKIFIRNAK	9	Unmodified	_NKIFIRNAK_					0	0	0			REV__tr|U7SN87|U7SN87_FUSNUGlutamatemutaseepsilonsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmEPE=3SV=1	REV__tr|U7SN87|U7SN87_FUSNUGlutamatemutaseepsilonsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmEPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	367.96435546875	3	368.560981	1102.66111	0.30576	0.00011269	-1.1456	-0.00042221	-0.8398	-0.00030952	368.89500364589634	20.104	0.507	20.104	19.877	20.384	0					15	9	2	0	0	0	0.75519	1	5057	5057		10.151	0	1	1764200	+		37128	28314	27159	27381	36156	36156					0.11388819733770106
NKIITVPV	8	Unmodified	_NKIITVPV_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;ENST00000471232.5_1_2:32750532-32815924:+|nuORF	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-SECPEP	A375_MHC_IP_R1	1	441.6168212890625	2	442.284203	882.553853	-0.16896	-7.473E-05	-0.05522	-2.4423E-05	-0.22418	-9.9153E-05	442.28410376133604	31.157	0.35562	31.157	31.059	31.414	0					10	6	2	0	0	0	0.972	1	10035	10035		2.5775	0	1	954200			37129	3337	27160	27382	36157	36157					0.10787849799555715
NKIPPGED	8	Unmodified	_NKIPPGED_					0	0	0		nc|ENSG00000196497|Q8TEX9-2|IPO4	nc|ENSG00000196497|Q8TEX9-2|IPO4	nc|ENSG00000196497|Q8TEX9-2|IPO4	MSMS	A375_MHC_IP_R1	1	435.2820739746094	2	435.2218	868.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.699	1	86.699	86.199	87.199	0								0	0	0	0.16876	1	31797	31797		18.135	0	1				37130	14837	27161	27383	36158	36158					-0.01043067407624676
NKISYFTINKY	11	Unmodified	_NKISYFTINKY_					0	0	0			REV__tr|U7STU9|U7STU9_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00990PE=4SV=1	REV__tr|U7STU9|U7STU9_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00990PE=4SV=1	MSMS	A375_MHC_IP_R1	1	696.2200317382812	2	695.871902	1389.72925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.53	1	105.53	105.03	106.03	0								0	0	0	0.16179	1	38743	38743		9.3831	2.66	1		+		37131	28509	27162	27384	36159	36159					0.04997599803141384
NKIYKRSR	8	Unmodified	_NKIYKRSR_					0	0	0		FLG|p.E258K|1|0.14|ENSG00000143631|chr1:152314114-152314114|C/T|missense_variant	FLG|p.E258K|1|0.14|ENSG00000143631|chr1:152314114-152314114|C/T|missense_variant	FLG|p.E258K|1|0.14|ENSG00000143631|chr1:152314114-152314114|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	355.94873046875	3	355.548964	1063.62506	-0.30703	-0.00010916	-0.17871	-6.3541E-05	-0.48574	-0.0001727	355.54890690059426	23.61	0.50843	23.61	23.381	23.889	0					10	9	2	0	0	0	0.94587	1	6552	6552		11.495	1.9507	1	4900200			37132	14004	27163	27385	36160	36160					0.09579362556928572
NKKEEILQL	9	Unmodified	_NKKEEILQL_					0	0	0			REV__EPB41L2|p.G610E|1|0.55|ENSG00000079819|chr6:130885100-130885100|C/T|missense_variant	REV__EPB41L2|p.G610E|1|0.55|ENSG00000079819|chr6:130885100-130885100|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	371.6121826171875	3	372.220401	1113.63937	0.54092	0.00020134	-0.45715	-0.00017016	0.083778	3.1184E-05	372.220282415542	37.396	0.30693	37.396	37.249	37.556	0					8	5	2	0	0	0	0.80332	1	12604	12604		0.96228	0	1	823960	+		37133	26580	27164	27386	36161	36161					0.08709970194581729
NKKEGRHLFER	11	Unmodified	_NKKEGRHLFER_					0	0	0			REV__nc|ENSG00000115317|O43464-2|HTRA2	REV__nc|ENSG00000115317|O43464-2|HTRA2	MSMS	A375_MHC_IP_R2	2	707.358642578125	2	707.389116	1412.76368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.36	1	118.97	118.47	119.47	0.60909								0	0	0	0.16258	1	44927	44927		5.2969	0.76802	1		+		37134	17874	27165	27387	36162	36162					0.07380860734588168
NKKILLTPRRR	11	Unmodified	_NKKILLTPRRR_					0	0	0		ENSG00000249961|ENST00000433154|TERB1	ENSG00000249961|ENST00000433154|TERB1	ENSG00000249961|ENST00000433154|TERB1	MSMS	A375_MHC_IP_R1	1	698.2667846679688	2	697.956969	1393.89939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.54	1	118.54	118.04	119.04	0								0	0	0	0.16334	1	43686	43686		1.3295	0.13619	1				37135	9844	27166	27388	36163	36163					0.21819180316015263
NKKKEDDIE	9	Unmodified	_NKKKEDDIE_					0	0	0			REV__tr|U7SJP3|U7SJP3_FUSNUHelix-turn-helixtype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02041PE=4SV=1	REV__tr|U7SJP3|U7SJP3_FUSNUHelix-turn-helixtype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02041PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	1118.969970703125	1	1118.56879	1117.56152	0.30787	0.00034438	0.74833	0.00083706	1.0562	0.0011814	1118.5695396482204	144.76	0.15521	144.78	144.69	144.84	0.021408					5	3	2	0	0	0	0.7724	1	56556	56556		0.52476	0.066424	1	501250	+		37136	28241	27167	27389	36164	36164					0.007439125385189982
NKKKPVINLK	10	Unmodified	_NKKKPVINLK_					0	0	0		nc|ENSG00000088970|Q2M2Z5-5|KIZ;nc|ENSG00000088970|Q2M2Z5-2|KIZ;nc|ENSG00000088970|Q2M2Z5-4|KIZ;ENSG00000088970|ENST00000619189|KIZ	nc|ENSG00000088970|Q2M2Z5-5|KIZ	nc|ENSG00000088970|Q2M2Z5-5|KIZ	MULTI-MSMS	A375_MHC_IP_R2	2	395.3302307128906	3	394.595802	1180.76558	-0.48088	-0.00018975	0.24916	9.8318E-05	-0.23172	-9.1435E-05	394.59597087116	20.451	1.2176	21.061	20.449	21.666	0.61029					49	23	3	0	0	0	0.70174	1	6289	6289		11.518	1.2026	1	2655300			37137	1906	27168	27390	36165	36165					0.18242521490492436
NKKKQLILK	9	Unmodified	_NKKKQLILK_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	A375_MHC_IP_R2	2	371.9264831542969	3	371.588648	1111.74411	0.090747	3.3721E-05	-0.11925	-4.4313E-05	-0.028507	-1.0593E-05	371.5885656589686	22.408	0.51069	23.027	22.795	23.306	0.61932					21	9	4	0	0	0	0.77563	1	7072	7072		0.23584	0.028987	1	4951700			37138	1083	27169	27391	36166	36166					0.19271136461793503
NKKKRKKKLR	10	Unmodified	_NKKKRKKKLR_					0	0	0			REV__nc|ENSG00000182670|P53804-3|TTC3	REV__nc|ENSG00000182670|P53804-3|TTC3	MSMS	A375_MHC_IP_R1	1	664.0103149414062	2	663.962055	1325.90956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.41	1	122.41	121.91	122.91	0								0	0	0	0.1562	1	45547	45547		1.6526	0	1		+		37139	21703	27170	27392	36167	36167					0.25963788041303815
NKKQAGTAI	9	Unmodified	_NKKQAGTAI_					0	0	0			REV__ENST00000503561.7_1_5:50057675-50130728:+|nuORF	REV__ENST00000503561.7_1_5:50057675-50130728:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	465.6980895996094	2	465.771991	929.529429	-0.51816	-0.00024134	0.179	8.3371E-05	-0.33916	-0.00015797	465.77206807307914	41.689	0.35823	41.689	41.47	41.828	0					10	6	2	0	0	0	0.12771	1	14436	14436		45.7	7.7256	1	1283200	+		37140	25517	27171	27393	36168	36168					0.06184589646022687
NKKQLAHTK	9	Unmodified	_NKKQLAHTK_					0	0	0			REV__ENST00000512692.6_1_4:141206332-141290472:-|nuORF	REV__ENST00000512692.6_1_4:141206332-141290472:-|nuORF	MSMS	A375_MHC_IP_R2	2	356.58294677734375	3	356.548852	1066.62473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.191	1	20.801	20.301	21.301	0.61029								0	0	0	0.15486	1	6265	6265		12.873	5.7709	1		+		37141	25627	27172	27394	36169	36169					0.09407942837083283
NKLALIPI	8	Unmodified	_NKLALIPI_					0	0	0			REV__tr|U7SU16|U7SU16_FUSNUSodium/pantothenatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01275PE=3SV=1	REV__tr|U7SU16|U7SU16_FUSNUSodium/pantothenatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01275PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	440.604248046875	2	441.294571	880.574589	-0.19022	-8.3943E-05	0.56519	0.00024941	0.37497	0.00016547	441.2946876981554	76.9	0.25702	76.9	76.724	76.981	0					6	4	2	0	0	0	0.97144	1	28010	28010		9.3474	0	1	651810	+		37142	28525	27173	27395	36170	36170					0.1295244017924233
NKLALIPI	8	Unmodified	_NKLALIPI_					0	0	0			REV__tr|U7SU16|U7SU16_FUSNUSodium/pantothenatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01275PE=3SV=1	REV__tr|U7SU16|U7SU16_FUSNUSodium/pantothenatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01275PE=3SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	441.294571	880.574589	-0.32567	-0.00014372	0.43234	0.00019079	0.10668	4.7076E-05	441.2946102438408	75.891	0.25423	76.632	76.487	76.742	0.74052	-0.13414	-6.1463E-05	NaN	9.3474	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	810000	+		37143	28525	27173	27395							0.1295244017924233
NKLFTRELG	9	Unmodified	_NKLFTRELG_					0	0	0		ENST00000289816.9_2_16:89804878-89805280:+|nuORF	ENST00000289816.9_2_16:89804878-89805280:+|nuORF	ENST00000289816.9_2_16:89804878-89805280:+|nuORF	MSMS	A375_MHC_IP_R2	2	359.8825988769531	3	359.873224	1076.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.127	1	46.892	46.392	47.392	0.76519								0	0	0	0.15486	1	17266	17266		2.7352	0.23671	1				37144	10467	27174	27396	36171	36171					0.06260834225895451
NKLGGIHA	8	Unmodified	_NKLGGIHA_					0	0	0		LUZP2|p.C147G|1|0.48|ENSG00000187398|chr11:24906033-24906033|T/G|missense_variant	LUZP2|p.C147G|1|0.48|ENSG00000187398|chr11:24906033-24906033|T/G|missense_variant	LUZP2|p.C147G|1|0.48|ENSG00000187398|chr11:24906033-24906033|T/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	405.6350402832031	2	405.235045	808.455536	0.059418	2.4078E-05	1.2745	0.00051645	1.3339	0.00054053	405.2354785680747	125.7	0.40419	126	125.82	126.23	0.2951					11	7	2	0	0	0	0.77781	1	49131	49131		2.8892	0	1	8582800			37145	14332	27175	27397	36172	36172					0.04364666274364026
NKLGRRCDMCS	11	Unmodified	_NKLGRRCDMCS_					0	0	0		ENST00000575475.2_1_17:5185712-5281605:+|nuORF;nc|ENSG00000029725|Q15276-2|RABEP1;ENSG00000029725|ENST00000537505|RABEP1	ENST00000575475.2_1_17:5185712-5281605:+|nuORF	ENST00000575475.2_1_17:5185712-5281605:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	428.1582946777344	3	428.19862	1281.57403	-0.13916	-5.9588E-05	2.3008	0.00098521	2.1617	0.00092563	428.53403334782405	37.122	0.45533	37.122	36.845	37.301	0					15	8	2	0	0	0	0.73016	1	12534	12534		4.4062	1.3339	1	1356200			37146	1107	27176	27398	36173	36173					-0.055494138660833414
NKLKKKKKALL	11	Unmodified	_NKLKKKKKALL_					0	0	0		ENST00000491139.5_1_6:31924712-31926696:-|nuORF;ENST00000492185.5_1_6:31922795-31926696:-|nuORF;ENST00000488426.5_1_6:31922795-31926316:-|nuORF;ENST00000481121.5_1_6:31921790-31926696:-|nuORF;nc|ENSG00000204356|P18615-4|NELFE;ENSG00000204356|ENST00000375429|NELFE;nc|ENSG00000204356|P18615-3|NELFE	ENST00000491139.5_1_6:31924712-31926696:-|nuORF	ENST00000491139.5_1_6:31924712-31926696:-|nuORF	MSMS	A375_MHC_IP_R1	1	656.4370727539062	2	656.463564	1310.91258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.12	1	106.12	105.62	106.62	0								0	0	0	0.1636	1	38955	38955		0	0	1				37147	9434	27177	27399	36174	36174					0.26955618375450285
NKLKPFIRLKI	11	Unmodified	_NKLKPFIRLKI_					0	0	0			REV__tr|U7T5X0|U7T5X0_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00002PE=4SV=1	REV__tr|U7T5X0|U7T5X0_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00002PE=4SV=1	MSMS	A375_MHC_IP_R1	1	685.4931640625	2	685.455739	1368.89693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.59	1	116.59	116.09	117.09	0								0	0	0	0.16334	1	42772	42772		1.3295	0.9789	1		+		37148	28843	27178	27400	36175	36175					0.22723331858401252
NKLLRWLRNWQ	11	Unmodified	_NKLLRWLRNWQ_					0	0	0		ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1	ENSG00000035928|ENST00000349703|RFC1	ENSG00000035928|ENST00000349703|RFC1	MSMS	A375_MHC_IP_R2	2	763.9381713867188	2	763.938776	1525.863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.97	1	121.42	120.92	121.92	0.44488								0	0	0	0.16336	1	46219	46219		2.9952	0	1				37149	1134	27179	27401	36176	36176					0.1211030341935384
NKLNYLRNYWL	11	Unmodified	_NKLNYLRNYWL_					0	0	0		ENSG00000178607|ENST00000433197|ERN1	ENSG00000178607|ENST00000433197|ERN1	ENSG00000178607|ENST00000433197|ERN1	MULTI-MSMS	A375_MHC_IP_R1	1	500.00469970703125	3	499.605137	1495.79358	-0.32332	-0.00016153	-0.66893	-0.0003342	-0.99225	-0.00049573	499.6047563367914	63.352	0.56334	63.352	63.069	63.632	0					17	10	2	0	0	0	0.7359	1	22851	22851		1.3296	0.11481	1	7676100			37150	8169	27180	27402	36177	36177					0.06551799679937176
NKLRKIVKIKR	11	Unmodified	_NKLRKIVKIKR_					0	0	0		tr|U7T570|U7T570_FUSNUDUF4271domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00465PE=4SV=1	tr|U7T570|U7T570_FUSNUDUF4271domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00465PE=4SV=1	tr|U7T570|U7T570_FUSNUDUF4271domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00465PE=4SV=1	MSMS	A375_MHC_IP_R1	1	698.3181762695312	2	698.485363	1394.95617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.29	1	118.29	117.79	118.79	0								0	0	0	0.16334	1	43511	43511		1.3295	0	1				37151	30014	27181	27403	36178	36178					0.27449227872580195
NKLRQAPDF	9	Unmodified	_NKLRQAPDF_					0	0	0		ENST00000506531.5_1_11:67057839-67066817:+|nuORF;nc|ENSG00000172932|Q6ZTN6-1|ANKRD13D;ENSG00000172932|ENST00000511455|ANKRD13D	ENST00000506531.5_1_11:67057839-67066817:+|nuORF	ENST00000506531.5_1_11:67057839-67066817:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	363.5950622558594	3	363.533091	1087.57744	0.27551	0.00010016	1.6572	0.00060246	1.9327	0.00070261	363.53390391426535	35.024	0.50871	35.024	34.912	35.421	0					12	9	2	0	0	0	0.57432	1	11658	11658		16.149	2.2431	1	2415600			37152	7746	27182	27404	36179	36179					0.037156635660721804
NKLSQLHH	8	Unmodified	_NKLSQLHH_					0	0	0			REV__PRRC2A|p.A420Pfs*151|1|0.32|ENSG00000204469|chr6:31627162-31627162|C/-|frameshift_variant	REV__PRRC2A|p.A420Pfs*151|1|0.32|ENSG00000204469|chr6:31627162-31627162|C/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	488.68426513671875	2	488.769783	975.525013	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.92	1	32.92	32.42	33.42	0								0	0	0	0.16876	1	10684	10684		32.305	9.1571	1		+		37153	27846	27183	27405	36180	36180					0.03627125223135863
NKLTYSHVI	9	Unmodified	_NKLTYSHVI_					0	0	0		ENST00000463317.6_1_X:155111099-155127806:+|nuORF	ENST00000463317.6_1_X:155111099-155127806:+|nuORF	ENST00000463317.6_1_X:155111099-155127806:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	359.26934814453125	3	358.869591	1073.58694	-0.37947	-0.00013618	-0.13493	-4.8423E-05	-0.5144	-0.0001846	358.869463923533	39.114	0.66188	39.888	39.607	40.269	0.77451					18	12	2	0	0	0	0.69507	1	14463	14463		9.544	7.458	1	3957800			37154	12211	27184	27406	36181	36181					0.0530943185160595
NKLVVIRKH	9	Unmodified	_NKLVVIRKH_					0	0	0			REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	MSMS	A375_MHC_IP_R1	1	553.9948120117188	2	553.861475	1105.7084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.12	1	142.12	141.62	142.62	0								0	0	0	0.15486	1	54534	54534		0	0	1		+		37155	27340	27185	27407	36182	36182					0.15977099004794582
NKMQEIRKY	9	Unmodified	_NKMQEIRKY_					0	0	0			REV__tr|U7T8A2|U7T8A2_FUSNU1,4-dihydroxy-2-naphthoateoctaprenyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00172PE=4SV=1	REV__tr|U7T8A2|U7T8A2_FUSNU1,4-dihydroxy-2-naphthoateoctaprenyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00172PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	403.2549133300781	3	403.885135	1208.63358	-0.60167	-0.00024301	0.80602	0.00032554	0.20435	8.2533E-05	403.88547734967017	19.394	0.28278	19.394	19.238	19.521	0					7	5	2	0	0	0	0.73363	1	4776	4776		10.8	10.345	1	3359500	+		37156	28883	27186	27408	36183	36183					0.03760548411264608
NKNGSFANL	9	Unmodified	_NKNGSFANL_					0	0	0		ENSG00000102172|ENST00000404933|SMS;SMS|p.I114*|1|0.36|ENSG00000102172|chrX:21977068-21977068|C/-|frameshift_variant	ENSG00000102172|ENST00000404933|SMS	ENSG00000102172|ENST00000404933|SMS	MULTI-MSMS	A375_MHC_IP_R1	1	482.6986389160156	2	482.745973	963.477394	-0.33235	-0.00016044	0.80779	0.00038996	0.47544	0.00022951	482.74575376966084	33.454	0.45737	33.454	33.241	33.698	0					11	8	2	0	0	0	0.11629	1	10938	10938		47.749	2.0491	1	2704800			37157	2361	27187	27409	36184	36184					-0.0058057376772922
NKNKQTNKKQW	11	Unmodified	_NKNKQTNKKQW_					0	0	0		ENST00000367296.8_2_1:201789623-201789671:+|nuORF	ENST00000367296.8_2_1:201789623-201789671:+|nuORF	ENST00000367296.8_2_1:201789623-201789671:+|nuORF	MSMS	A375_MHC_IP_R2	2	708.89013671875	2	708.888949	1415.76335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.71	1	120.24	119.74	120.74	0.5321								0	0	0	0.16265	1	45617	45617		4.897	0	1				37158	11087	27188	27410	36185	36185					0.07209441014742879
NKNPWSCI	8	Unmodified	_NKNPWSCI_					0	0	0		ENSG00000067066|ENST00000340126|SP100;ENST00000494901.5_1_2:231375770-231407658:+|nuORF	ENSG00000067066|ENST00000340126|SP100	ENSG00000067066|ENST00000340126|SP100	MULTI-MSMS	A375_MHC_IP_R2	2	481.1719970703125	2	481.231645	960.448736	-0.58532	-0.00028167	0.5448	0.00026218	-0.040514	-1.9497E-05	481.23188764057454	31.673	0.50523	32.41	32.249	32.755	0.73691					12	9	2	0	0	0	0.73946	1	11256	11256		23.148	5.0134	1	1080400			37159	1426	27189	27411	36186	36186					-0.03307014668519059
NKNPWSCI	8	Unmodified	_NKNPWSCI_					0	0	0		ENSG00000067066|ENST00000340126|SP100;ENST00000494901.5_1_2:231375770-231407658:+|nuORF	ENSG00000067066|ENST00000340126|SP100	ENSG00000067066|ENST00000340126|SP100	MULTI-MATCH	A375_MHC_IP_R1	1		2	481.231645	960.448736	-0.55234	-0.0002658	0.25945	0.00012486	-0.29289	-0.00014095	481.23187142522056	32.347	0.35529	32.347	32.179	32.535	0	-0.031323	-0.0001674	NaN	23.148	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1098400			37160	1426	27189	27411							-0.03307014668519059
NKNRHRMN	8	Unmodified	_NKNRHRMN_					0	0	0		nc|ENSG00000163875|Q9HAF1-4|MEAF6	nc|ENSG00000163875|Q9HAF1-4|MEAF6	nc|ENSG00000163875|Q9HAF1-4|MEAF6	MULTI-SECPEP	A375_MHC_IP_R1	1	535.6744995117188	2	535.275241	1068.53593	-1.163	-0.00062254	-0.16688	-8.9326E-05	-1.3299	-0.00071187	535.27473397014	29.361	0.35457	29.361	29.149	29.504	0					11	6	3	0	0	0	0.92636	1	9192	9192		11.64	4.9171	1	6090600			37161	14722	27190	27412	36187	36187					0.004402043257641708
NKPKKELIK	9	Unmodified	_NKPKKELIK_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	A375_MHC_IP_R2	2	367.5853576660156	3	366.572886	1096.69683	0.098532	3.6119E-05	0.032433	1.1889E-05	0.13097	4.8008E-05	366.57289187640185	32.146	1.575	32.882	32.504	34.079	0.73692					88	30	5	0	0	0	0.31062	1	11460	11460		28.234	0	1	165200000			37162	4347	27191	27413	36188	36188					0.15234857190785078
NKQDFEYTKE	10	Unmodified	_NKQDFEYTKE_					0	0	0		ENSG00000133131|ENST00000355610|MORC4;nc|ENSG00000133131|Q8TE76-3|MORC4;nc|ENSG00000133131|Q8TE76-2|MORC4	ENSG00000133131|ENST00000355610|MORC4	ENSG00000133131|ENST00000355610|MORC4	MULTI-MSMS	A375_MHC_IP_R1	1	435.9389343261719	3	434.538458	1300.59355	-0.35206	-0.00015298	0.6497	0.00028232	0.29764	0.00012934	434.53898554444777	36.901	0.7597	36.901	36.541	37.301	0					48	14	5	0	0	0	0.67512	1	12509	12509		9.7643	4.3615	1	33356000			37163	4491	27192	27414	36189	36189					-0.04472719778368628
NKQESDCV	8	Unmodified	_NKQESDCV_					0	0	0		PGP|p.N292K|1|0.24|ENSG00000184207|chr16:2213818-2213818|A/C|missense_variant	PGP|p.N292K|1|0.24|ENSG00000184207|chr16:2213818-2213818|A/C|missense_variant	PGP|p.N292K|1|0.24|ENSG00000184207|chr16:2213818-2213818|A/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	461.6577453613281	2	461.700374	921.386196	-0.79971	-0.00036923	-0.51765	-0.000239	-1.3174	-0.00060823	461.7001923324379	51.983	0.86412	52.735	52.27	53.134	0.75225					29	16	2	0	0	0	0.77797	1	19718	19718		2.3027	0	1	3205200			37164	15163	27193	27415	36190	36190					-0.07764205527359991
NKQESDCV	8	Unmodified	_NKQESDCV_					0	0	0		PGP|p.N292K|1|0.24|ENSG00000184207|chr16:2213818-2213818|A/C|missense_variant	PGP|p.N292K|1|0.24|ENSG00000184207|chr16:2213818-2213818|A/C|missense_variant	PGP|p.N292K|1|0.24|ENSG00000184207|chr16:2213818-2213818|A/C|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	461.700374	921.386196	-0.79971	-0.00036923	-0.51765	-0.000239	-1.3174	-0.00060823	461.7001923324379	51.983	0.86412	52.735	52.27	53.134	0.75225	0.055042	-0.00016428	NaN	2.3027	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3205200			37165	15163	27193	27415							-0.07764205527359991
NKQFPNMGLL	10	Unmodified	_NKQFPNMGLL_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-MSMS	A375_MHC_IP_R1	1	388.2585144042969	3	387.874348	1160.60121	-0.072441	-2.8098E-05	-1.6472	-0.00063891	-1.7196	-0.000667	387.873705318706	23.743	0.4575	23.743	23.381	23.838	0					12	8	2	0	0	0	0.6502	1	6536	6536		10.899	0	1	2589000	+		37166	21760	27194	27416	36191	36191					0.027337610082668107
NKQLKKVLK	9	Unmodified	_NKQLKKVLK_					0	0	0		ENSG00000055044|ENST00000264279|NOP58;ENST00000478941.1_1_2:203147084-203155055:+|nuORF;ENST00000488403.5_1_2:203130664-203149205:+|nuORF;ENST00000472050.5_1_2:203130664-203149064:+|nuORF	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	A375_MHC_IP_R2	2	367.3167419433594	3	366.916764	1097.72846	-0.12223	-4.4849E-05	-1.1024	-0.00040448	-1.2246	-0.00044933	366.9168380159763	18.855	0.20984	19.458	19.423	19.633	0.60308					12	5	4	0	0	0	0.31062	1	5685	5685		29.841	15.435	1	35810000			37167	1266	27195	27417	36192	36192					0.18350849944727088
NKREKVIQD	9	Unmodified	_NKREKVIQD_					0	0	0		ENSG00000165972|ENST00000344280|CCDC38	ENSG00000165972|ENST00000344280|CCDC38	ENSG00000165972|ENST00000344280|CCDC38	MULTI-SECPEP	A375_MHC_IP_R1	1	377.1003723144531	3	377.21565	1128.62512	0.23951	9.0349E-05	-2.0101	-0.00075824	-1.7706	-0.00066789	377.54900607913424	32.159	0.41172	32.159	31.921	32.333	0					16	7	3	0	0	0	0.775	1	10366	10366		10.8	2.0477	1	1767400			37168	7011	27196	27418	36193	36193					0.06595317766277731
NKRKRYRKKIK	11	Unmodified	_NKRKRYRKKIK_					0	0	0			REV__KMT2C|p.E4343Kfs*13|1|0.36|ENSG00000055609|chr7:152148900-152148900|C/-|frameshift_variant	REV__KMT2C|p.E4343Kfs*13|1|0.36|ENSG00000055609|chr7:152148900-152148900|C/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	759.4995727539062	2	759.496793	1516.97903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.53	1	122.91	122.41	123.41	0.3766								0	0	0	0.16334	1	46966	46966		1.3295	0	1		+		37169	16415	27197	27419	36194	36194					0.2412224699003218
NKRLLWLI	8	Unmodified	_NKRLLWLI_					0	0	0		tr|U7SV43|U7SV43_FUSNUSeptumformationinitiatorsubfamilyOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01122PE=4SV=1	tr|U7SV43|U7SV43_FUSNUSeptumformationinitiatorsubfamilyOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01122PE=4SV=1	tr|U7SV43|U7SV43_FUSNUSeptumformationinitiatorsubfamilyOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01122PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	352.9625244140625	3	352.562321	1054.66514	-0.22925	-8.0824E-05	1.0955	0.00038623	0.86624	0.0003054	352.56266758570814	76.96	0.65516	77.703	77.303	77.958	0.74293					18	12	2	0	0	0	0.77797	1	29193	29193		1.4819	0	1	1734900			37170	29789	27198	27420	36195	36195					0.1399890922753002
NKRNSDDQSY	10	Unmodified	_NKRNSDDQSY_					0	0	0			REV__ENST00000480171.7_1_2:159519375-159537186:+|nuORF	REV__ENST00000480171.7_1_2:159519375-159537186:+|nuORF	MSMS	A375_MHC_IP_R2	2	613.6902465820312	2	613.773448	1225.53234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.829	1	72.563	72.063	73.063	0.73421								0	0	0	0.14864	1	27254	27254		20.415	2.0414	1		+		37171	19414	27199	27421	36196	36196					-0.07140231757762194
NKRQVAPG	8	Unmodified	_NKRQVAPG_					0	0	0		nc|ENSG00000257103|Q8ND56-3|LSM14A;nc|ENSG00000257103|Q8ND56|LSM14A;ENSG00000257103|ENST00000544216|LSM14A	nc|ENSG00000257103|Q8ND56-3|LSM14A	nc|ENSG00000257103|Q8ND56-3|LSM14A	MULTI-MSMS	A375_MHC_IP_R1	1	435.6508483886719	2	435.251226	868.487899	-0.16108	-7.0109E-05	0.021941	9.55E-06	-0.13914	-6.0559E-05	435.2511357797836	99.557	2.8896	99.557	98.352	101.24	0					89	56	2	0	0	0	0.7779	1	36573	36573		2.5775	2.5775	1	5199800			37172	9904	27200	27422	36197	36197					0.04839453677379879
NKRRAKKAKK	10	Unmodified	_NKRRAKKAKK_					0	0	0		ENST00000477789.5_1_X:119059185-119070773:-|nuORF;ENSG00000101882|ENST00000371410|NKAP	ENST00000477789.5_1_X:119059185-119070773:-|nuORF	ENST00000477789.5_1_X:119059185-119070773:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	614.6558837890625	2	614.409655	1226.80476	-0.40563	-0.00024922	3.6585	0.0022478	3.2529	0.0019986	614.4126131820375	115.57	0.35276	116.26	116.04	116.39	0.68999					11	6	3	0	0	0	0.94516	1	43492	43492		3.5965	1.7523	1	5194900			37173	2332	27201	27423	36198	36198					0.20042666564722822
NKRRRRKESPT	11	Unmodified	_NKRRRRKESPT_					0	0	0		ENST00000428753.1_1_10:71335887-71336873:+|nuORF	ENST00000428753.1_1_10:71335887-71336873:+|nuORF	ENST00000428753.1_1_10:71335887-71336873:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	477.01629638671875	3	476.614919	1426.82293	-0.87157	-0.0004154	2.2585	0.0010764	1.387	0.00066104	476.61674638010084	143.08	0.40263	143.08	142.79	143.19	0					16	7	3	0	0	0	0.73807	1	54888	54888		1.2148	0.76031	1	1136000			37174	11838	27202	27424	36199	36199					0.126587567488059
NKRRRRRRRQ	10	Unmodified	_NKRRRRRRRQ_					0	0	0			REV__ENST00000607809.5_1_12:54472874-54474119:-|nuORF	REV__ENST00000607809.5_1_12:54472874-54474119:-|nuORF	MSMS	A375_MHC_IP_R1	1	741.8260498046875	2	741.464681	1480.91481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.49	1	144.49	143.99	144.99	0								0	0	0	0.15629	1	55411	55411		0.40072	0.093686	1		+		37175	26553	27203	27425	36200	36200					0.1935890467648278
NKRRRRRRRQ	10	Unmodified	_NKRRRRRRRQ_					0	0	0			REV__ENST00000607809.5_1_12:54472874-54474119:-|nuORF	REV__ENST00000607809.5_1_12:54472874-54474119:-|nuORF	MSMS	A375_MHC_IP_R2	2	741.8258056640625	2	741.464681	1480.91481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.54	1	144.56	144.06	145.06	0.024414								0	0	0	0.15629	1	56455	56455		0.40072	0.093686	1		+		37176	26553	27203	27425	36201	36201					0.1935890467648278
NKSAWRHYQTI	11	Unmodified	_NKSAWRHYQTI_					0	0	0		ENST00000512204.5_1_17:48185497-48187458:+|nuORF;nc|ENSG00000005882|Q15119-2|PDK2;ENSG00000005882|ENST00000503176|PDK2	ENST00000512204.5_1_17:48185497-48187458:+|nuORF	ENST00000512204.5_1_17:48185497-48187458:+|nuORF	MSMS	A375_MHC_IP_R2	2	702.1728515625	2	702.362567	1402.71058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.1	1	116.76	116.26	117.26	0.65962								0	0	0	0.15183	1	43791	43791		19.362	11.206	1				37177	902	27204	27426	36202	36202					0.025334829519351842
NKSGAKPPA	9	Unmodified	_NKSGAKPPA_					0	0	0			REV__ENSG00000067798|ENST00000397909|NAV3	REV__ENSG00000067798|ENST00000397909|NAV3	MSMS	A375_MHC_IP_R2	2	435.1612854003906	2	435.245609	868.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.993	1	24.626	24.126	25.126	0.6326								0	0	0	0.15411	1	7811	7811		14.838	0.93222	1		+		37178	16534	27205	27427	36203	36203					0.037166315832337204
NKSIFEAIR	9	Unmodified	_NKSIFEAIR_					0	0	0			REV__tr|U7T461|U7T461_FUSNUHTHrpiR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00267PE=4SV=1	REV__tr|U7T461|U7T461_FUSNUHTHrpiR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00267PE=4SV=1	MSMS	A375_MHC_IP_R1	1	359.8828430175781	3	359.873224	1076.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.611	1	44.611	44.111	45.111	0								0	0	0	0.15486	1	15574	15574		6.1918	0	1		+		37179	28793	27206	27428	36204	36204					0.06260834225872713
NKSKREAIPN	10	Unmodified	_NKSKREAIPN_					0	0	0			REV__nc|ENSG00000175984|Q68D51-2|DENND2C	REV__nc|ENSG00000175984|Q68D51-2|DENND2C	MSMS	A375_MHC_IP_R2	2	386.27252197265625	3	386.219283	1155.63602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.693	1	43.465	42.965	43.965	0.7724								0	0	0	0.15353	1	15887	15887		5.4027	2.047	1		+		37180	21379	27207	27429	36205	36205					0.06442720140557867
NKTCEIVDYC	10	Unmodified	_NKTCEIVDYC_					0	0	0		ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.N3185Ifs*33|1|0.2|ENSG00000168702|chr2:140475211-140475211|A/-|frameshift_variant	ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	MSMS	A375_MHC_IP_R1	1	594.6759033203125	2	594.257199	1186.49985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.192	1	86.192	85.692	86.692	0								0	0	0	0.15353	1	31600	31600		9.3831	0.78985	1				37181	7335	27208	27430	36206	36206					-0.08594478476607037
NKTKQNNEEF	10	Unmodified	_NKTKQNNEEF_					0	0	0		ENSG00000124251|ENST00000372726|TP53TG5	ENSG00000124251|ENST00000372726|TP53TG5	ENSG00000124251|ENST00000372726|TP53TG5	MULTI-SECPEP	A375_MHC_IP_R2	2	417.29425048828125	3	417.87032	1250.58913	-0.35953	-0.00015024	0.82233	0.00034363	0.46281	0.00019339	417.8705622714121	19.901	0.55494	20.512	20.146	20.701	0.61029					16	10	2	0	0	0	0.93578	1	6217	6217		5.7834	5.6435	1	985080			37182	3890	27209	27431	36207	36207					-0.02614184201252101
NKTNKDGLL	9	Unmodified	_NKTNKDGLL_					0	0	0		ENSG00000100628|ENST00000555019|ASB2;nc|ENSG00000100628|Q96Q27-1|ASB2	ENSG00000100628|ENST00000555019|ASB2	ENSG00000100628|ENST00000555019|ASB2	MULTI-SECPEP	A375_MHC_IP_R2	2	502.1829528808594	2	501.782556	1001.55056	-0.41883	-0.00021016	0.88901	0.00044609	0.47017	0.00023592	501.78303210168593	143.24	0.15199	143.26	143.18	143.34	0.024414					4	2	2	0	0	0	0.79191	1	56006	56006		3.5965	0.31518	1	892860			37183	2204	27210	27432	36208	36208					0.04984554954910436
NKVAPVVI	8	Unmodified	_NKVAPVVI_					0	0	0		ENSG00000107719|ENST00000263563|PALD1	ENSG00000107719|ENST00000263563|PALD1	ENSG00000107719|ENST00000263563|PALD1	MULTI-MSMS	A375_MHC_IP_R1	1	420.2440185546875	2	420.271096	838.527639	0.11252	4.7288E-05	-0.17491	-7.351E-05	-0.062393	-2.6222E-05	420.270976998758	61.854	0.40942	61.854	61.636	62.046	0					12	7	2	0	0	0	0.77702	1	22271	22271		5.7604	0	1	2624800			37184	2751	27211	27433	36209	36209					0.1019158062807719
NKVENLLWV	9	Unmodified	_NKVENLLWV_					0	0	0		ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1	ENSG00000035928|ENST00000349703|RFC1	ENSG00000035928|ENST00000349703|RFC1	MULTI-SECPEP	A375_MHC_IP_R1	1	372.9296875	3	372.213358	1113.61824	0.54725	0.00020369	-0.24272	-9.0343E-05	0.30453	0.00011335	372.21316314102444	42.81	0.40537	42.81	42.587	42.993	0					16	7	3	0	0	0	0.77834	1	14784	14784		1.0715	1.0715	1	1934700			37185	1134	27212	27434	36210	36210					0.06598004885699993
NKVKYEKEKKK	11	Unmodified	_NKVKYEKEKKK_					0	0	0		tr|U7T4A0|U7T4A0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00395PE=4SV=1	tr|U7T4A0|U7T4A0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00395PE=4SV=1	tr|U7T4A0|U7T4A0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00395PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	711.8272094726562	2	711.427376	1420.8402	-0.5538	-0.00039399	-0.78962	-0.00056176	-1.3434	-0.00095574	711.9274541659248	145.05	0.27301	145.08	145.01	145.28	0.021408					13	11	2	0	0	0	0.73902	1	56654	56654		0.30703	0	1	481320			37186	29997	27213	27435	36211	36211					0.14661239511178792
NKVLKGEIPW	10	Unmodified	_NKVLKGEIPW_					0	0	0		nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	MULTI-MSMS	A375_MHC_IP_R2	2	395.6324768066406	3	395.232641	1182.67609	-0.13964	-5.5188E-05	0.26415	0.0001044	0.12452	4.9213E-05	395.2327112300989	76.791	0.50395	77.531	77.301	77.805	0.74073					18	9	3	0	0	0	0.66308	1	29172	29172		10.315	2.0288	1	2812800			37187	5204	27214	27436	36212	36212					0.09206266811133901
NKVLKRFVLLV	11	Unmodified	_NKVLKRFVLLV_					0	0	0			REV__MAB21L3|p.E151K|1|0.46|ENSG00000173212|chr1:116124327-116124327|G/A|missense_variant	REV__MAB21L3|p.E151K|1|0.46|ENSG00000173212|chr1:116124327-116124327|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	664.9699096679688	2	664.942465	1327.87038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.65	1	121.65	121.15	122.15	0								0	0	0	0.16334	1	45194	45194		1.3295	0	1		+		37188	26971	27215	27437	36213	36213					0.219556429670547
NKVVVNQDK	9	Unmodified	_NKVVVNQDK_					0	0	0		nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	MULTI-MSMS	A375_MHC_IP_R2	2	522.69775390625	2	522.29583	1042.57711	-0.63421	-0.00033124	0.31414	0.00016407	-0.32007	-0.00016717	522.2959135353661	127.69	1.1185	127.96	127.56	128.68	0.26593					40	21	2	0	0	0	0.71416	1	50051	50051		5.7319	0	1	30242000			37189	3438	27216	27438	36214	36214					0.057522438462456194
NKWFFQKLRF	10	Unmodified	_NKWFFQKLRF_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-SECPEP	A375_MHC_IP_R1	1	471.64581298828125	3	471.931185	1412.77173	-0.4564	-0.00021539	-0.17301	-8.1647E-05	-0.6294	-0.00029703	471.93111827297906	80.009	0.40878	80.009	79.728	80.136	0					11	7	2	0	0	0	0.86608	1	29203	29203		17.863	14.507	1	1031800			37190	4332	27217	27439	36215	36215					0.08185039722025067
NKWTKKRLRFR	11	Unmodified	_NKWTKKRLRFR_					0	0	0			REV__nc|ENSG00000170242|Q96K76-2|USP47	REV__nc|ENSG00000170242|Q96K76-2|USP47	MSMS	A375_MHC_IP_R2	2	766.9669799804688	2	766.967868	1531.92118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.866	1	99.625	99.125	100.13	0.75977								0	0	0	0.16354	1	37501	37501		0.30703	0	1		+		37191	20976	27218	27440	36216	36216					0.17649985064599605
NKYELSKYWK	10	Unmodified	_NKYELSKYWK_					0	0	0			REV__tr|U7T532|U7T532_FUSNUThioredoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00415PE=4SV=1	REV__tr|U7T532|U7T532_FUSNUThioredoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00415PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	452.90045166015625	3	453.574955	1357.70304	-0.54097	-0.00024537	-0.5299	-0.00024035	-1.0709	-0.00048572	453.57478660822903	19.839	0.45452	20.449	20.095	20.549	0.61029					11	8	2	0	0	0	0.94521	1	6029	6029		4.7159	4.7159	1	472070	+		37192	28815	27219	27441	36217	36217					0.03849330631646808
NKYEQEGQEQF	11	Unmodified	_NKYEQEGQEQF_					0	0	0			REV__CACNA1C|p.P1597Qfs*32|1|0.14|ENSG00000151067|chr12:2668954-2668961|CCTCTGAA/-|frameshift_variant	REV__CACNA1C|p.P1597Qfs*32|1|0.14|ENSG00000151067|chr12:2668954-2668961|CCTCTGAA/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	700.2228393554688	2	700.309863	1398.60517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.636	1	27.296	26.796	27.796	0.65992								0	0	0	0.15837	1	9022	9022		15.248	0.8431	1		+		37193	15548	27220	27442	36218	36218					-0.07818522754996593
NKYPQAVFL	9	Unmodified	_NKYPQAVFL_					0	0	0		ENSG00000091164|ENST00000217515|TXNL1	ENSG00000091164|ENST00000217515|TXNL1	ENSG00000091164|ENST00000217515|TXNL1	MULTI-SECPEP	A375_MHC_IP_R2	2	539.6312255859375	2	540.297842	1078.58113	-1.119	-0.00060457	-0.23142	-0.00012504	-1.3504	-0.00072961	540.2976769564524	71.895	0.70724	72.629	72.314	73.021	0.73421					40	13	4	0	0	0	0.046478	1	27253	27253		71.134	38.828	1	11622000			37194	1974	27221	27443	36219	36219					0.04498333339938654
NKYWRYDKYKR	11	Unmodified	_NKYWRYDKYKR_					0	0	0		MMP1|p.E402K|1|0.56|ENSG00000196611|chr11:102790799-102790799|C/T|missense_variant	MMP1|p.E402K|1|0.56|ENSG00000196611|chr11:102790799-102790799|C/T|missense_variant	MMP1|p.E402K|1|0.56|ENSG00000196611|chr11:102790799-102790799|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	810.4229736328125	2	810.425699	1618.83684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.25	1	127.52	127.02	128.02	0.26593								0	0	0	0.16339	1	49866	49866		1.0715	0.72083	1				37195	14389	27222	27444	36220	36220					0.052179894571963814
NLAECGIEED	10	Unmodified	_NLAECGIEED_					0	0	0			REV__MROH7|p.D632N|1|0.55|ENSG00000184313|chr1:54674109-54674109|G/A|missense_variant	REV__MROH7|p.D632N|1|0.55|ENSG00000184313|chr1:54674109-54674109|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	547.4811401367188	2	546.729329	1091.4441	-0.87877	-0.00048045	-2.8112	-0.0015369	-3.6899	-0.0020174	547.2285028243933	80.902	0.46246	81.647	81.416	81.879	0.74474					12	8	2	0	0	0	0.92957	1	30652	30652		3.2813	1.2216	1	1696400	+		37196	27036	27223	27445	36221	36221					-0.09795988392579602
NLAEDIMRL	9	Oxidation (M)	_NLAEDIM(Oxidation (M))RL_		NLAEDIM(1)RL		NLAEDIM(70)RL	0	0	1		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R1	1	545.72412109375	2	545.781699	1089.54884	-0.62094	-0.0003389	-0.20239	-0.00011046	-0.82333	-0.00044936	545.7817418578919	80.059	1.0165	80.059	79.728	80.744	0					57	19	4	0	0	0	0.035419	2	29232	29232;29307		70.332	18.702	1	15499000			37197	1093	27224	27446	36222;36223	36222		15			0.007651778746321725
NLAEDIMRL	9	Oxidation (M)	_NLAEDIM(Oxidation (M))RL_		NLAEDIM(1)RL		NLAEDIM(62)RL	0	0	1		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R2	2	546.1812133789062	2	545.781699	1089.54884	-0.69198	-0.00037767	-0.085585	-4.6711E-05	-0.77756	-0.00042438	545.7816783258958	79.383	0.8633	80.128	79.693	80.556	0.74474					39	16	3	0	0	0	0.056914	2	30049	30049;30124		61.602	18.523	1	14539000			37198	1093	27224	27446	36224;36225	36224		15			0.007651778746321725
NLAEDIMRL	9	Oxidation (M)	_NLAEDIM(Oxidation (M))RL_		NLAEDIM(1)RL		NLAEDIM(53)RL	0	0	1		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	A375_MHC_IP_R2	2	545.7017211914062	2	545.781699	1089.54884	-0.8655	-0.00047237	-0.93351	-0.00050949	-1.799	-0.00098186	545.7815063418136	80.746	1.0699	81.49	80.961	82.03	0.74474					46	20	3	0	0	0	0.11849	1	30642	30642		53.404	16.898	1	16718000			37199	1093	27224	27446	36226	36226		15			0.007651778746321725
NLAEDIMRL	9	Oxidation (M)	_NLAEDIM(Oxidation (M))RL_		NLAEDIM(1)RL		NLAEDIM(53)RL	0	0	1		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	A375_MHC_IP_R2	2	546.1812133789062	2	545.781699	1089.54884	-0.77719	-0.00042418	0.079387	4.3328E-05	-0.69781	-0.00038085	545.7816059799247	108.39	1.1245	109.15	108.71	109.84	0.75436					30	21	2	0	0	0	0.16595	1	40915	40915		53.404	16.898	1	3824500			37200	1093	27224	27446	36227	36227		15			0.007651778746321725
NLAEDIMRL	9	Unmodified	_NLAEDIMRL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1358642578125	2	537.784241	1073.55393	-0.46077	-0.00024779	-0.13527	-7.2748E-05	-0.59604	-0.00032054	537.7842432668261	109.3	1.1205	109.3	108.92	110.04	0					61	21	4	0	0	0	0.030244	1	40097	40097		87.258	22.023	1	38875000			37201	1093	27224	27447	36228	36228					0.020094817372637408
NLAEDIMRL	9	Unmodified	_NLAEDIMRL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	A375_MHC_IP_R2	2	538.18408203125	2	537.784241	1073.55393	-0.84822	-0.00045616	-0.10032	-5.3951E-05	-0.94854	-0.00051011	537.7842669112914	108.38	1.1245	109.13	108.71	109.84	0.75436					66	21	5	0	0	0	0.016541	1	40858	40858		96.936	36.862	1	33611000			37202	1093	27224	27447	36229	36229					0.020094817372637408
NLAEELEGV	9	Unmodified	_NLAEELEGV_					0	0	0		NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	487.6453552246094	2	487.245472	972.476391	-0.26467	-0.00012896	0.17199	8.3799E-05	-0.09268	-4.5158E-05	487.2454793435254	96.127	0.65999	96.127	95.767	96.427	0					22	12	2	0	0	0	0.010171	1	35285	35285		96.111	30.876	1	3386200			37203	4441	27225	27448	36230	36230					-0.010948329272764568
NLAEELEGV	9	Unmodified	_NLAEELEGV_					0	0	0		NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	487.6454772949219	2	487.245472	972.476391	-0.37525	-0.00018284	0.0017337	8.4476E-07	-0.37352	-0.00018199	487.24541085384544	95.27	0.7654	96.02	95.735	96.5	0.75045					31	14	3	0	0	0	0.0070829	1	36186	36186		131.27	27.519	1	4080600			37204	4441	27225	27448	36231	36231					-0.010948329272764568
NLAEKLIGV	9	Unmodified	_NLAEKLIGV_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;ENST00000495949.1_1_20:37126104-37128277:+|nuORF	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-SECPEP	A375_MHC_IP_R1	1	479.19207763671875	2	478.792392	955.570232	-0.40564	-0.00019422	-0.13736	-6.5766E-05	-0.543	-0.00025998	478.79230294399895	82.999	1.0126	82.999	82.672	83.685	0					64	19	5	0	0	0	0.010874	1	30309	30309		137.42	52.152	1	90917000			37205	7511	27226	27449	36232	36232					0.09066930965661868
NLAEKLIGV	9	Unmodified	_NLAEKLIGV_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;ENST00000495949.1_1_20:37126104-37128277:+|nuORF	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-SECPEP	A375_MHC_IP_R2	2	479.1917724609375	2	478.792392	955.570232	-0.59596	-0.00028534	0.23303	0.00011158	-0.36293	-0.00017377	478.792468572239	82.071	1.1162	82.814	82.431	83.547	0.74293					69	21	4	0	0	0	0.011066	1	31100	31100		114.2	39.273	1	99720000			37206	7511	27226	27449	36233	36233					0.09066930965661868
NLAEKPKTV	9	Unmodified	_NLAEKPKTV_					0	0	0		nc|ENSG00000136813|Q5VYK3|ECPAS;ENSG00000136813|ENST00000684092|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-MSMS	A375_MHC_IP_R1	1	500.6699523925781	2	500.295299	998.576045	-0.56901	-0.00028467	0.65771	0.00032905	0.088701	4.4377E-05	500.29538296471384	19.293	0.13068	19.293	19.238	19.368	0					4	2	2	0	0	0	0.29123	1	4685	4685		31.268	5.0002	1	5069500			37207	4820	27227	27450	36234	36234					0.07670029477321805
NLAELGMQY	9	Unmodified	_NLAELGMQY_					0	0	0			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1918334960938	2	519.749867	1037.48518	-0.56265	-0.00029244	-1.5803	-0.00082134	-2.1429	-0.0011138	519.7489263876826	81.228	0.3036	81.228	81.1	81.404	0					7	5	2	0	0	0	0.56537	1	29666	29666		17.113	0	1	1225700	+		37208	22015	27228	27451	36235	36235					-0.03206182562439608
NLAENISRV	9	Unmodified	_NLAENISRV_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENSG00000068976|ENST00000164139|PYGM;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	A375_MHC_IP_R1	1	1015.2525634765625	1	1015.55308	1014.54581	0.55106	0.00055963	-0.62746	-0.00063722	-0.076405	-7.7593E-05	1015.552428640682	48.383	0.91182	48.383	48.071	48.983	0					48	17	4	0	0	0	0.14554	1	17092	17092		65.474	34.205	1	79458000			37209	2241;2187	27229	27452	36236	36236					0.03911670812135526
NLAENISRV	9	Unmodified	_NLAENISRV_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENSG00000068976|ENST00000164139|PYGM;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	A375_MHC_IP_R2	2	508.67999267578125	2	508.28018	1014.54581	-0.59906	-0.00030449	-0.55909	-0.00028417	-1.1581	-0.00058866	508.28003133253486	47.489	3.1453	48.25	47.766	50.912	0.76127					211	61	5	0	0	0	0.0073895	1	17748	17748		159.1	83.34	1	2161700000			37210	2241;2187	27229	27452	36237	36237					0.03911670812135526
NLAENISRV	9	Unmodified	_NLAENISRV_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENSG00000068976|ENST00000164139|PYGM;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	A375_MHC_IP_R2	2	1015.2529907226562	1	1015.55308	1014.54581	0.17842	0.0001812	-0.67545	-0.00068595	-0.49702	-0.00050475	1015.5524199535047	47.469	1.0636	48.231	47.97	49.034	0.76128					55	20	4	0	0	0	0.077986	1	17860	17860		81.915	45.409	1	83234000			37211	2241;2187	27229	27452	36238	36238					0.03911670812135526
NLAEVVERV	9	Unmodified	_NLAEVVERV_					0	0	0		nc|ENSG00000167196|Q8NEZ5-2|FBXO22;ENST00000565131.5_1_15:76196304-76197948:+|nuORF;nc|ENSG00000167196|Q8NEZ5-3|FBXO22;ENSG00000167196|ENST00000308275|FBXO22	nc|ENSG00000167196|Q8NEZ5-2|FBXO22	nc|ENSG00000167196|Q8NEZ5-2|FBXO22	MULTI-MSMS	A375_MHC_IP_R1	1	515.1906127929688	2	514.790381	1027.56621	-0.42774	-0.0002202	0.13187	6.7887E-05	-0.29587	-0.00015231	514.7904171363992	70.965	0.5127	70.965	70.698	71.211	0					20	9	3	0	0	0	0.058226	2	25759	25734;25759		61.09	26.688	1	4327900			37212	7168	27230	27453	36239;36240	36240					0.05352841471949432
NLAEVVERV	9	Unmodified	_NLAEVVERV_					0	0	0		nc|ENSG00000167196|Q8NEZ5-2|FBXO22;ENST00000565131.5_1_15:76196304-76197948:+|nuORF;nc|ENSG00000167196|Q8NEZ5-3|FBXO22;ENSG00000167196|ENST00000308275|FBXO22	nc|ENSG00000167196|Q8NEZ5-2|FBXO22	nc|ENSG00000167196|Q8NEZ5-2|FBXO22	MULTI-SECPEP	A375_MHC_IP_R2	2	514.6412963867188	2	514.790381	1027.56621	-0.69585	-0.00035822	0.148	7.6188E-05	-0.54786	-0.00028203	514.7903551019197	70.08	0.61053	70.814	70.488	71.099	0.73421					23	11	3	0	0	0	0.062502	1	26581	26581		65.474	5.3998	1	5813300			37213	7168	27230	27453	36241	36241					0.05352841471949432
NLAGKKDSSP	10	Unmodified	_NLAGKKDSSP_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP;ENST00000573850.1_1_16:27709674-27761267:+|nuORF	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	MULTI-MSMS	A375_MHC_IP_R2	2	509.171875	2	508.772188	1015.52982	-1.0607	-0.00053967	0.26148	0.00013304	-0.79924	-0.00040663	508.77237228498205	61.382	1.0573	62.127	61.769	62.826	0.74503					44	20	3	0	0	0	0.2347	1	23230	23230		45.7	1.8413	1	9780400			37214	1201	27231	27454	36242	36242					0.022679645752305078
NLAHSDDVP	9	Unmodified	_NLAHSDDVP_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	A375_MHC_IP_R1	1	484.6275939941406	2	484.227613	966.440674	-0.26977	-0.00013063	0.68131	0.00032991	0.41154	0.00019928	484.22789485807704	57.39	0.8649	57.39	57.059	57.923	0					24	16	2	0	0	0	0.62767	1	20570	20570		11.64	0	1	4396000			37215	3905	27232	27455	36243	36243					-0.04388870384286747
NLAIMTEWI	9	Unmodified	_NLAIMTEWI_					0	0	0		ENST00000415279.1_1_1:106434930-106435587:+|nuORF	ENST00000415279.1_1_1:106434930-106435587:+|nuORF	ENST00000415279.1_1_1:106434930-106435587:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	545.705078125	2	545.78371	1089.55287	-0.74299	-0.00040551	-2.9676	-0.0016197	-3.7106	-0.0020252	546.2822483347979	86.457	0.25294	86.457	86.274	86.527	0					5	4	2	0	0	0	0.65246	1	31704	31704		15.847	3.6065	1	855630			37216	11677	27233	27456	36244	36244					0.011672673683506218
NLAKCIVSV	9	Unmodified	_NLAKCIVSV_					0	0	0		ENSG00000140688|ENST00000327237|RUSF1	ENSG00000140688|ENST00000327237|RUSF1	ENSG00000140688|ENST00000327237|RUSF1	MULTI-MSMS	A375_MHC_IP_R1	1	474.1728820800781	2	473.773145	945.531738	-0.80213	-0.00038003	0.33075	0.0001567	-0.47138	-0.00022333	473.7733518416612	67.977	1.8757	67.977	67.552	69.427	0					49	36	2	0	0	0	0.06083	1	24551	24551		60.074	17.979	1	4321200			37217	5177	27234	27457	36245	36245					0.05679302059490965
NLAKCIVSV	9	Unmodified	_NLAKCIVSV_					0	0	0		ENSG00000140688|ENST00000327237|RUSF1	ENSG00000140688|ENST00000327237|RUSF1	ENSG00000140688|ENST00000327237|RUSF1	MULTI-MSMS	A375_MHC_IP_R2	2	474.1726989746094	2	473.773145	945.531738	-0.60793	-0.00028802	-0.16175	-7.6632E-05	-0.76967	-0.00036465	473.7731546618353	66.855	1.9326	67.591	67.087	69.02	0.73631					56	37	2	0	0	0	0.037683	1	25526	25526		69.105	27.01	1	6091500			37218	5177	27234	27457	36246	36246					0.05679302059490965
NLAKCIVSV	9	Carbamidomethyl (C)	_NLAKC(Carbamidomethyl (C))IVSV_	NLAKC(1)IVSV		NLAKC(93)IVSV		0	1	0		ENSG00000140688|ENST00000327237|RUSF1	ENSG00000140688|ENST00000327237|RUSF1	ENSG00000140688|ENST00000327237|RUSF1	MULTI-SECPEP	A375_MHC_IP_R1	1	502.172119140625	2	502.283877	1002.5532	-0.4307	-0.00021633	0.62121	0.00031202	0.19051	9.569E-05	502.2842702451696	58.327	0.66119	58.327	58.024	58.685	0					19	12	2	0	0	0	0.03109	1	20962	20962		92.653	44.307	1	6242100			37219	5177	27234	27458	36247	36247	33				0.052026870882059484
NLAKCIVSV	9	Carbamidomethyl (C)	_NLAKC(Carbamidomethyl (C))IVSV_	NLAKC(1)IVSV		NLAKC(66)IVSV		0	1	0		ENSG00000140688|ENST00000327237|RUSF1	ENSG00000140688|ENST00000327237|RUSF1	ENSG00000140688|ENST00000327237|RUSF1	MULTI-SECPEP	A375_MHC_IP_R2	2	502.6837463378906	2	502.283877	1002.5532	-0.97151	-0.00048798	0.31602	0.00015873	-0.65549	-0.00032924	502.2840781506052	57.352	0.76322	58.101	57.865	58.629	0.74894					25	14	3	0	0	0	0.13208	1	21704	21704		66.457	18.111	1	5491100			37220	5177	27234	27458	36248	36248	33				0.052026870882059484
NLAKEREPV	9	Unmodified	_NLAKEREPV_					0	0	0		ENSG00000004139|ENST00000585482|SARM1;nc|ENSG00000004139|Q6SZW1-2|SARM1	ENSG00000004139|ENST00000585482|SARM1	ENSG00000004139|ENST00000585482|SARM1	MULTI-SECPEP	A375_MHC_IP_R1	1	528.6390380859375	2	528.29583	1054.57711	-0.72741	-0.00038429	-0.28236	-0.00014917	-1.0098	-0.00053346	528.2955828273932	84.395	0.45606	84.395	84.241	84.697	0					11	8	2	0	0	0	0.69504	1	31029	31029		7.9102	0	1	1542100			37221	864	27235	27459	36249	36249					0.052002438462295686
NLANPDVR	8	Unmodified	_NLANPDVR_					0	0	0			REV__KLHL4|p.G227R|1|0.64|ENSG00000102271|chrX:87614522-87614522|G/A|missense_variant	REV__KLHL4|p.G227R|1|0.64|ENSG00000102271|chrX:87614522-87614522|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	450.1713562011719	2	449.740691	897.466829	0.22344	0.00010049	-0.047157	-2.1208E-05	0.17628	7.928E-05	449.74045945410245	48.339	0.70865	48.339	48.122	48.831	0					23	13	3	0	0	0	0.55372	1	17037	17037		48.346	2.3249	1	4368000	+		37222	26861	27236	27460	36250	36250					0.013994435778499792
NLANPDVR	8	Unmodified	_NLANPDVR_					0	0	0			REV__KLHL4|p.G227R|1|0.64|ENSG00000102271|chrX:87614522-87614522|G/A|missense_variant	REV__KLHL4|p.G227R|1|0.64|ENSG00000102271|chrX:87614522-87614522|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	450.14031982421875	2	449.740691	897.466829	-0.14902	-6.7019E-05	-0.010058	-4.5235E-06	-0.15907	-7.1542E-05	449.7405055290095	47.522	0.6096	48.283	48.022	48.632	0.76127					20	11	2	0	0	0	0.68328	1	17820	17820		39.957	0	1	4036100	+		37223	26861	27236	27460	36251	36251					0.013994435778499792
NLAPREAQ	8	Unmodified	_NLAPREAQ_					0	0	0			REV__ENSG00000155034|ENST00000382368|FBXL18	REV__ENSG00000155034|ENST00000382368|FBXL18	MULTI-MSMS	A375_MHC_IP_R2	2	450.1714782714844	2	449.740691	897.466829	-0.14902	-6.7019E-05	-0.010058	-4.5235E-06	-0.15907	-7.1542E-05	449.7405055290095	47.522	0.6096	48.283	48.022	48.632	0.76127					20	11	2	0	0	0	0.51581	1	17771	17771		48.346	0	1	4036100	+		37224	19911	27237	27461	36252	36252					0.013994435778499792
NLAPREAQ	8	Unmodified	_NLAPREAQ_					0	0	0			REV__ENSG00000155034|ENST00000382368|FBXL18	REV__ENSG00000155034|ENST00000382368|FBXL18	MULTI-SECPEP	A375_MHC_IP_R2	2	450.1714782714844	2	449.740691	897.466829	-0.14902	-6.7019E-05	-0.010058	-4.5235E-06	-0.15907	-7.1542E-05	449.7405055290095	47.522	0.6096	48.283	48.022	48.632	0.76127					20	11	2	0	0	0	0.55372	1	17771	17771		48.346	0	1	4036100	+		37225	19911	27237	27461	36253	36253					0.013994435778499792
NLASFIEQV	9	Unmodified	_NLASFIEQV_					0	0	0		ENST00000493228.1_1_10:72643709-72647885:-|nuORF;ENSG00000166228|ENST00000299299|PCBD1	ENST00000493228.1_1_10:72643709-72647885:-|nuORF	ENST00000493228.1_1_10:72643709-72647885:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	511.1704406738281	2	510.771657	1019.52876	-0.6573	-0.00033573	-0.52683	-0.00026909	-1.1841	-0.00060482	510.77126449833924	124.88	0.55175	124.88	124.65	125.2	0					16	10	3	0	0	0	0.001114	1	47221	47221		152.89	5.8268	1	40954000			37226	7045	27238	27462	36254	36254					0.019777502063448082
NLASFIEQV	9	Unmodified	_NLASFIEQV_					0	0	0		ENST00000493228.1_1_10:72643709-72647885:-|nuORF;ENSG00000166228|ENST00000299299|PCBD1	ENST00000493228.1_1_10:72643709-72647885:-|nuORF	ENST00000493228.1_1_10:72643709-72647885:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1021.24267578125	1	1020.53604	1019.52876	-0.027508	-2.8073E-05	-0.52439	-0.00053516	-0.5519	-0.00056324	1020.5349236446048	124.87	0.25007	124.87	124.75	125	0					6	4	2	0	0	0	0.011004	1	47143	47143		143.91	40.556	1	83738000			37227	7045	27238	27462	36255	36255					0.019777502063448082
NLASFIEQV	9	Unmodified	_NLASFIEQV_					0	0	0		ENST00000493228.1_1_10:72643709-72647885:-|nuORF;ENSG00000166228|ENST00000299299|PCBD1	ENST00000493228.1_1_10:72643709-72647885:-|nuORF	ENST00000493228.1_1_10:72643709-72647885:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	511.1715087890625	2	510.771657	1019.52876	-0.72884	-0.00037227	0.0069399	3.5447E-06	-0.7219	-0.00036873	510.7716524560182	124.22	0.5564	124.55	124.29	124.85	0.32968					19	10	3	0	0	0	0.001114	1	47975	47975		152.89	21.618	1	26873000			37228	7045	27238	27462	36256	36256					0.019777502063448082
NLASVAPFTV	10	Unmodified	_NLASVAPFTV_					0	0	0		ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	MULTI-SECPEP	A375_MHC_IP_R2	2	510.4508972167969	2	509.782025	1017.5495	-1.0327	-0.00052646	1.3496	0.00068799	0.31686	0.00016153	509.78267657045916	49.615	0.70836	50.373	49.843	50.551	0.75737					20	13	2	0	0	0	0.87163	1	18521	18521		2.9952	0.26005	1	2994500			37229	9863	27239	27463	36257	36257					0.04142340585997317
NLAVDVNGKS	10	Unmodified	_NLAVDVNGKS_					0	0	0			REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	MULTI-MSMS	A375_MHC_IP_R1	1	509.17205810546875	2	508.772188	1015.52982	-0.33428	-0.00017007	-0.080171	-4.0789E-05	-0.41446	-0.00021086	508.7722611133771	62.166	1.1779	62.166	61.891	63.069	0					49	22	3	0	0	0	0.21617	1	22491	22491		47.594	1.8948	1	10480000	+		37230	20820	27240	27464	36258	36258					0.022679645752418764
NLCDLITSL	9	Unmodified	_NLCDLITSL_					0	0	0		ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	MULTI-SECPEP	A375_MHC_IP_R1	1	496.3590087890625	2	496.260068	990.505582	-0.63979	-0.0003175	0.049542	2.4586E-05	-0.59025	-0.00029292	496.2601872730467	133.14	0.30621	133.14	133	133.3	0					8	5	2	0	0	0	0.79535	1	51337	51337		3.2813	0	1	1874000			37231	6160	27241	27465	36259	36259					0.00994988097352234
NLCPTRIEV	9	Unmodified	_NLCPTRIEV_					0	0	0		ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L;nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	ENSG00000196141|ENST00000409140|SPATS2L	ENSG00000196141|ENST00000409140|SPATS2L	MULTI-SECPEP	A375_MHC_IP_R1	1	522.2107543945312	2	522.778959	1043.54336	-0.60977	-0.00031878	0.081019	4.2355E-05	-0.52875	-0.00027642	522.7789712208607	65.283	1.1679	65.283	64.954	66.122	0					41	22	2	0	0	0	0.04038	1	23659	23659		75.761	14.403	1	11262000			37232	9004	27242	27466	36260	36260					0.023334990828288937
NLCPTRIEV	9	Unmodified	_NLCPTRIEV_					0	0	0		ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L;nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	ENSG00000196141|ENST00000409140|SPATS2L	ENSG00000196141|ENST00000409140|SPATS2L	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1786499023438	2	522.778959	1043.54336	-0.52463	-0.00027427	-0.28758	-0.00015034	-0.81221	-0.00042461	522.7788258873336	64.458	1.2718	65.198	64.8	66.071	0.74022					45	24	2	0	0	0	0.03341	1	24383	24383		103.42	51.151	1	15967000			37233	9004	27242	27466	36261	36261					0.023334990828288937
NLCPTRIEV	9	Carbamidomethyl (C)	_NLC(Carbamidomethyl (C))PTRIEV_	NLC(1)PTRIEV		NLC(65)PTRIEV		0	1	0		ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L;nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	ENSG00000196141|ENST00000409140|SPATS2L	ENSG00000196141|ENST00000409140|SPATS2L	MULTI-MSMS	A375_MHC_IP_R2	2	551.6898803710938	2	551.289691	1100.56483	-0.85829	-0.00047317	-0.26599	-0.00014664	-1.1243	-0.00061981	551.2897525127081	55.562	0.65848	56.312	55.933	56.591	0.75075					23	12	3	0	0	0	0.04699	1	20988	20988		65.474	21.615	1	6638000			37234	9004	27242	27467	36262	36262	44				0.018568841115438772
NLCWMEGPV	9	Unmodified	_NLCWMEGPV_					0	0	0		ENST00000474612.1_1_6:32164788-32165290:-|nuORF	ENST00000474612.1_1_6:32164788-32165290:-|nuORF	ENST00000474612.1_1_6:32164788-32165290:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	524.0156860351562	2	524.733163	1047.45177	-0.589	-0.00030907	-0.022502	-1.1808E-05	-0.6115	-0.00032088	524.7331753335702	65.298	0.56104	65.298	65.055	65.616	0					15	10	2	0	0	0	0.60012	1	23629	23629		7.9102	3.1541	1	1713800			37235	12408	27243	27468	36263	36263					-0.07005507606004358
NLDAATYQV	9	Unmodified	_NLDAATYQV_					0	0	0		nc|ENSG00000283761|Q9Y2D2-2|SLC35A3;nc|ENSG00000283761|Q9Y2D2-3|SLC35A3;ENSG00000117620|ENST00000533028|SLC35A3	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	MULTI-SECPEP	A375_MHC_IP_R1	1	498.1456298828125	2	497.745639	993.476725	-0.26562	-0.00013221	1.344	0.00066897	1.0784	0.00053676	497.7454508420554	62.625	0.51167	62.625	62.351	62.863	0					20	9	3	0	0	0	0.4465	1	22659	22659		31.268	15.421	1	1662700			37236	14944	27244	27469	36264	36264					-0.020274132074405316
NLDAAVYQV	9	Unmodified	_NLDAAVYQV_					0	0	0		ENST00000506888.5_1_6:88187111-88216600:+|nuORF;nc|ENSG00000164414|P78382-2|SLC35A1;ENSG00000164414|ENST00000369552|SLC35A1	ENST00000506888.5_1_6:88187111-88216600:+|nuORF	ENST00000506888.5_1_6:88187111-88216600:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	497.1553649902344	2	496.756007	991.497461	-0.48939	-0.00024311	-0.60252	-0.00029931	-1.0919	-0.00054241	496.755927301682	77.687	0.51038	78.429	78.113	78.624	0.74293					22	9	3	0	0	0	0.04447	1	29508	29508		66.457	11.683	1	2232100			37237	6836	27245	27470	36265	36265					0.0013717717223471482
NLDALHTLSA	10	Unmodified	_NLDALHTLSA_					0	0	0		ENSG00000183034|ENST00000331427|OTOP2	ENSG00000183034|ENST00000331427|OTOP2	ENSG00000183034|ENST00000331427|OTOP2	MULTI-SECPEP	A375_MHC_IP_R1	1	527.649658203125	2	527.780013	1053.54547	-0.70419	-0.00037166	-4.4427	-0.0023448	-5.1469	-0.0027164	528.2774562305925	84.337	0.3007	84.337	84.091	84.391	0					8	5	2	0	0	0	0.8125	1	30843	30843		18.146	0	1	1219700			37238	8458	27246	27471	36266	36266					0.02084251092287559
NLDDHVWC	8	Unmodified	_NLDDHVWC_					0	0	0			REV__ENSG00000011405|ENST00000691414|PIK3C2A	REV__ENSG00000011405|ENST00000691414|PIK3C2A	MSMS	A375_MHC_IP_R2	2	501.17767333984375	2	501.210909	1000.40727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.211	1	84.95	84.45	85.45	0.73962								0	0	0	0.16876	1	32008	32008		13.508	0	1		+		37239	16208	27247	27472	36267	36267					-0.09292195427838124
NLDDNEGENY	10	Unmodified	_NLDDNEGENY_					0	0	0		tr|U7T668|U7T668_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00128PE=4SV=1	tr|U7T668|U7T668_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00128PE=4SV=1	tr|U7T668|U7T668_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00128PE=4SV=1	MSMS	A375_MHC_IP_R2	2	591.7056884765625	2	591.730914	1181.44728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.508	1	87.241	86.741	87.741	0.733								0	0	0	0.14862	1	32898	32898		20.454	7.4112	1				37240	30044	27248	27473	36268	36268					-0.13619022014222537
NLDEEKQLLY	10	Unmodified	_NLDEEKQLLY_					0	0	0		nc|ENSG00000139926|Q96NE9-2|FRMD6;ENSG00000139926|ENST00000344768|FRMD6	nc|ENSG00000139926|Q96NE9-2|FRMD6	nc|ENSG00000139926|Q96NE9-2|FRMD6	MULTI-SECPEP	A375_MHC_IP_R2	2	633.2244262695312	2	632.824618	1263.63468	-0.73451	-0.00046482	-0.029797	-1.8856E-05	-0.76431	-0.00048367	632.8246949076436	63.781	0.40659	64.521	64.292	64.699	0.74022					11	7	2	0	0	0	0.67395	1	24217	24217		37.075	14.338	1	2122400			37241	5117	27249	27474	36269	36269					0.013410412611619904
NLDFQMEQY	9	Oxidation (M)	_NLDFQM(Oxidation (M))EQY_		NLDFQM(1)EQY		NLDFQM(81)EQY	0	0	1		ENSG00000168028|ENST00000301821|RPSA;ENST00000477325.1_1_3:39449144-39450287:+|nuORF	ENSG00000168028|ENST00000301821|RPSA	ENSG00000168028|ENST00000301821|RPSA	MULTI-MSMS	A375_MHC_IP_R1	1	602.6534423828125	2	602.252971	1202.49139	-0.28673	-0.00017268	-0.028229	-1.7001E-05	-0.31496	-0.00018968	602.2529473436015	70.819	0.61365	70.819	70.494	71.108	0					23	11	3	0	0	0	0.02331	1	25751	25751		80.676	30.743	1	3046700			37242	7255	27250	27475	36270	36270		369			-0.10175709121585896
NLDFQMEQY	9	Unmodified	_NLDFQMEQY_					0	0	0		ENSG00000168028|ENST00000301821|RPSA;ENST00000477325.1_1_3:39449144-39450287:+|nuORF	ENSG00000168028|ENST00000301821|RPSA	ENSG00000168028|ENST00000301821|RPSA	MULTI-SECPEP	A375_MHC_IP_R1	1	594.6557006835938	2	594.255514	1186.49647	-0.53492	-0.00031788	0.077324	4.595E-05	-0.4576	-0.00027193	594.2559786162327	94.556	0.66435	94.556	94.241	94.905	0					23	12	3	0	0	0	0.5212	1	34772	34772		26.268	16.921	1	1957300			37243	7255	27250	27476	36271	36271					-0.08931405258977065
NLDGFWFV	8	Unmodified	_NLDGFWFV_					0	0	0			REV__ENST00000461241.1_1_22:31523357-31529733:+|nuORF	REV__ENST00000461241.1_1_22:31523357-31529733:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	500.2195739746094	2	499.242535	996.470518	-0.37372	-0.00018658	0.21448	0.00010708	-0.15924	-7.9498E-05	499.24252101418017	87.932	0.71339	87.932	87.593	88.307	0					26	13	3	0	0	0	0.77624	1	32207	32207		8.5933	8.5933	1	4272200	+		37244	21873	27251	27477	36272	36272					-0.0278588664829158
NLDIIQQEY	9	Unmodified	_NLDIIQQEY_					0	0	0		ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	568.6851806640625	2	568.285128	1134.5557	-0.44178	-0.00025106	2.1844	0.0012414	1.7426	0.0009903	568.2854095322923	89.992	1.1656	89.992	89.526	90.692	0					74	22	5	0	0	0	0.011253	1	33056	33056		148.27	37.715	1	14645000			37245	3304	27252	27478	36273	36273					-0.006191859731416116
NLDIIQQEY	9	Unmodified	_NLDIIQQEY_					0	0	0		ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	568.68505859375	2	568.285128	1134.5557	-0.26863	-0.00015266	1.5088	0.00085745	1.2402	0.00070479	568.2853068912666	89.39	1.4199	90.122	89.331	90.751	0.7318					76	27	5	0	0	0	0.077986	1	33978	33978		89.401	19.069	1	15678000			37246	3304	27252	27478	36274	36274					-0.006191859731416116
NLDKLHTALS	10	Unmodified	_NLDKLHTALS_					0	0	0		NCKAP1|p.H711Afs*9|1|0.13|ENSG00000061676|chr2:182956473-182956485|TATTTCCAGATGA/-|frameshift_variant;NCKAP1|p.S861Lfs*12|1|0.27|ENSG00000061676|chr2:182952409-182952424|AGTTCAGCAACTTGTG/-|frameshift_variant;ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	NCKAP1|p.H711Afs*9|1|0.13|ENSG00000061676|chr2:182956473-182956485|TATTTCCAGATGA/-|frameshift_variant	NCKAP1|p.H711Afs*9|1|0.13|ENSG00000061676|chr2:182956473-182956485|TATTTCCAGATGA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	555.64111328125	2	556.308938	1110.60332	-0.58268	-0.00032415	2.8729	0.0015982	2.2902	0.0012741	556.3106592124559	89.705	0.55679	89.705	89.323	89.88	0					15	10	2	0	0	0	0.87163	1	32908	32908		13.906	3.0821	1	1182900			37247	1321	27253	27479	36275	36275					0.05244513017692043
NLDKNTVGY	9	Unmodified	_NLDKNTVGY_					0	0	0		nc|ENSG00000007923|Q9NVH1-3|DNAJC11;nc|ENSG00000007923|Q9NVH1-2|DNAJC11;ENSG00000007923|ENST00000377577|DNAJC11	nc|ENSG00000007923|Q9NVH1-3|DNAJC11	nc|ENSG00000007923|Q9NVH1-3|DNAJC11	MULTI-MSMS	A375_MHC_IP_R1	1	512.2029418945312	2	512.258914	1022.50327	-0.8263	-0.00042328	-0.21715	-0.00011124	-1.0435	-0.00053452	512.258827010851	29.929	0.64865	29.929	29.703	30.351	0					28	12	3	0	0	0	0.0098859	2	9448	9448;9463		117.76	63.928	1	54956000			37248	946	27254	27480	36276;36277	36276					-0.007077243161006663
NLDKNTVGY	9	Unmodified	_NLDKNTVGY_					0	0	0		nc|ENSG00000007923|Q9NVH1-3|DNAJC11;nc|ENSG00000007923|Q9NVH1-2|DNAJC11;ENSG00000007923|ENST00000377577|DNAJC11	nc|ENSG00000007923|Q9NVH1-3|DNAJC11	nc|ENSG00000007923|Q9NVH1-3|DNAJC11	MULTI-MSMS	A375_MHC_IP_R2	2	512.6583862304688	2	512.258914	1022.50327	-1.5993	-0.00081925	0.35817	0.00018348	-1.2411	-0.00063577	512.2590757455303	29.308	0.60451	30.007	29.78	30.385	0.69872					33	11	4	0	0	0	0.0066517	1	10201	10201		165.72	86.992	1	43293000			37249	946	27254	27480	36278	36278					-0.007077243161006663
NLDLAPALMP	10	Unmodified	_NLDLAPALMP_					0	0	0			REV__ENSG00000117480|ENST00000243167|FAAH	REV__ENSG00000117480|ENST00000243167|FAAH	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6494750976562	2	527.78371	1053.55287	-0.5438	-0.00028701	-3.8678	-0.0020414	-4.4116	-0.0023284	527.7818629100725	82.076	0.35814	82.819	82.684	83.042	0.74293					9	6	2	0	0	0	0.72086	1	31235	31235		30.637	1.555	1	608750	+		37250	18010	27255	27481	36279	36279					0.028232673683760368
NLDLQWNF	8	Unmodified	_NLDLQWNF_					0	0	0		nc|ENSG00000167984|Q7RTR2-4|NLRC3	nc|ENSG00000167984|Q7RTR2-4|NLRC3	nc|ENSG00000167984|Q7RTR2-4|NLRC3	MULTI-MSMS	A375_MHC_IP_R1	1	526.6740112304688	2	525.256174	1048.49779	-0.060687	-3.1876E-05	0.86422	0.00045394	0.80354	0.00042206	525.2565126975502	44.626	1.4753	44.626	43.859	45.334	0					85	28	4	0	0	0	0.77123	1	15356	15356		14.582	1.5392	1	23011000			37251	14752	27256	27482	36280	36280					-0.02451403107920669
NLDNPIQTV	9	Unmodified	_NLDNPIQTV_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;NOMO1|p.S1091F|1|0.27|ENSG00000103512|chr16:14886810-14886810|C/T|missense_variant;ENST00000572932.1_1_16:16374097-16382502:+|nuORF	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-SECPEP	A375_MHC_IP_R2	2	507.666748046875	2	507.266739	1012.51892	-0.73287	-0.00037176	-0.26675	-0.00013531	-0.99963	-0.00050708	507.26694167643757	74.072	1.6284	74.81	74.043	75.671	0.73752					88	31	4	0	0	0	0.01147	1	28049	28049		110.55	27.124	1	13157000			37252	2432	27257	27483	36281	36281					0.013165622009410072
NLDPAALTL	9	Unmodified	_NLDPAALTL_					0	0	0		ENST00000564789.5_1_16:90106452-90109750:+|nuORF;ENST00000569558.5_1_16:90103573-90109750:+|nuORF;ENST00000540721.5_1_16:90089090-90108732:+|nuORF;nc|ENSG00000141013|O95995-2|GAS8;ENSG00000141013|ENST00000268699|GAS8	ENST00000564789.5_1_16:90106452-90109750:+|nuORF	ENST00000564789.5_1_16:90106452-90109750:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	928.9937744140625	1	927.514573	926.507297	0.13418	0.00012445	-1.2768	-0.0011843	-1.1426	-0.0010598	927.514014887947	93.05	0.61142	93.05	92.769	93.381	0					30	11	4	0	0	0	0.2487	1	34248	34248		34.402	3.1334	1	19411000			37253	5208	27258	27484	36282	36282					0.04110365177609765
NLDPAVHEV	9	Unmodified	_NLDPAVHEV_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;ENST00000503738.5_1_2:27851561-27855513:+|nuORF;ENST00000461249.1_1_2:27852141-27855513:+|nuORF;ENST00000478484.5_1_2:27851925-27854072:+|nuORF	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-SECPEP	A375_MHC_IP_R1	1	497.6533508300781	2	497.253631	992.49271	-0.47815	-0.00023776	0.24351	0.00012108	-0.23464	-0.00011668	497.25377789585053	40.076	1.5735	40.076	39.794	41.368	0					61	30	4	0	0	0	0.046478	1	13715	13715		72.968	14.289	1	55505000			37254	9277	27259	27485	36283	36283					-0.003837069705241447
NLDPAVHEV	9	Unmodified	_NLDPAVHEV_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;ENST00000503738.5_1_2:27851561-27855513:+|nuORF;ENST00000461249.1_1_2:27852141-27855513:+|nuORF;ENST00000478484.5_1_2:27851925-27854072:+|nuORF	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-MSMS	A375_MHC_IP_R2	2	497.6529541015625	2	497.253631	992.49271	-0.58657	-0.00029168	-0.13434	-6.6799E-05	-0.72091	-0.00035847	497.25360073392756	39.317	1.3711	40.092	39.812	41.183	0.77451					65	26	4	0	0	0	0.015701	1	14475	14475		88.954	34.18	1	53150000			37255	9277	27259	27485	36284	36284					-0.003837069705241447
NLDPKITEY	9	Unmodified	_NLDPKITEY_					0	0	0		ENSG00000119446|ENST00000417201|RBM18	ENSG00000119446|ENST00000417201|RBM18	ENSG00000119446|ENST00000417201|RBM18	MULTI-MSMS	A375_MHC_IP_R1	1	547.181884765625	2	546.782222	1091.54989	-0.68187	-0.00037284	1.2612	0.00068959	0.57931	0.00031676	546.7831322435773	52.746	0.81091	52.746	52.49	53.301	0					37	15	3	0	0	0	0.0096822	1	18765	18765		110.55	41.448	1	11355000			37256	3595	27260	27486	36285	36285					0.007777155151643456
NLDPLTETY	9	Unmodified	_NLDPLTETY_					0	0	0		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-MSMS	A375_MHC_IP_R1	1	533.6588134765625	2	533.258579	1064.50261	-0.67849	-0.00036181	0.39637	0.00021137	-0.28211	-0.00015044	533.2587356654534	89.565	1.7759	89.565	89.12	90.896	0					118	34	5	0	0	0	0.0092511	2	32844	32844;33057		103.42	59.561	1	55224000			37257	7796	27261	27487	36286;36287	36286					-0.02706563755782554
NLDPLTETY	9	Unmodified	_NLDPLTETY_					0	0	0		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-MSMS	A375_MHC_IP_R2	2	533.6578979492188	2	533.258579	1064.50261	-0.66509	-0.00035467	-0.11424	-6.0919E-05	-0.77933	-0.00041559	533.2584029780711	88.948	1.8268	89.68	89.279	91.106	0.7318					108	35	5	0	0	0	0.0092511	2	33771	33771;33998		103.42	51.79	1	42770000			37258	7796	27261	27487	36288;36289	36288					-0.02706563755782554
NLDQFEKY	8	Unmodified	_NLDQFEKY_					0	0	0			REV__nc|ENSG00000111913|Q9Y4F9-2|RIPOR2	REV__nc|ENSG00000111913|Q9Y4F9-2|RIPOR2	MULTI-SECPEP	A375_MHC_IP_R2	2	529.1366577148438	2	528.753464	1055.49238	-0.44012	-0.00023272	-0.56252	-0.00029743	-1.0026	-0.00053015	528.7530816885262	68.916	0.86075	69.651	69.272	70.133	0.73511					40	16	4	0	0	0	0.77651	1	25990	25990		26.884	7.4447	1	12987000	+		37259	17705	27262	27488	36290	36290					-0.03315126690381476
NLDQPDFYYEY	11	Unmodified	_NLDQPDFYYEY_					0	0	0		TRAPPC12|p.L459F|1|0.2|ENSG00000171853|chr2:3424621-3424621|C/T|missense_variant	TRAPPC12|p.L459F|1|0.2|ENSG00000171853|chr2:3424621-3424621|C/T|missense_variant	TRAPPC12|p.L459F|1|0.2|ENSG00000171853|chr2:3424621-3424621|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	733.4302978515625	2	733.809165	1465.60378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.23	1	131.23	130.73	131.73	0								0	0	0	0.16307	1	50596	50596		2.7352	0.23671	1				37260	30071	27263	27489	36291	36291					-0.11040156843728255
NLDQPDLYY	9	Unmodified	_NLDQPDLYY_					0	0	0		ENSG00000171853|ENST00000324266|TRAPPC12	ENSG00000171853|ENST00000324266|TRAPPC12	ENSG00000171853|ENST00000324266|TRAPPC12	MULTI-SECPEP	A375_MHC_IP_R1	1	571.16552734375	2	570.764029	1139.5135	-0.49604	-0.00028312	1.2961	0.00073976	0.80004	0.00045664	570.7647122370832	86.062	0.45554	86.062	85.819	86.274	0					18	8	3	0	0	0	0.31606	1	31576	31576		47.749	22.349	1	1886300			37261	7650	27264	27490	36292	36292					-0.05067161381521146
NLDQPDLYY	9	Unmodified	_NLDQPDLYY_					0	0	0		ENSG00000171853|ENST00000324266|TRAPPC12	ENSG00000171853|ENST00000324266|TRAPPC12	ENSG00000171853|ENST00000324266|TRAPPC12	MULTI-SECPEP	A375_MHC_IP_R2	2	570.4113159179688	2	570.764029	1139.5135	-0.14116	-8.0571E-05	0.7136	0.0004073	0.57244	0.00032673	570.7645657092045	85.518	0.4075	86.254	85.933	86.341	0.73602					12	7	2	0	0	0	0.74412	1	32430	32430		10.074	0.6908	1	1186400			37262	7650	27264	27490	36293	36293					-0.05067161381521146
NLDRQLLF	8	Unmodified	_NLDRQLLF_					0	0	0			REV__nc|ENSG00000121274|Q8NDF8-5|TENT4B	REV__nc|ENSG00000121274|Q8NDF8-5|TENT4B	MULTI-MSMS	A375_MHC_IP_R2	2	509.703369140625	2	509.787641	1017.56073	-0.95904	-0.0004889	0.19294	9.8358E-05	-0.7661	-0.00039055	509.7878011595036	71.213	0.91278	71.947	71.706	72.618	0.73421					28	17	3	0	0	0	0.72284	1	27047	27047		27.629	5.8822	1	2084700	+		37263	18154	27265	27491	36294	36294					0.05265162680143476
NLDSARFRY	9	Unmodified	_NLDSARFRY_					0	0	0		nc|ENSG00000134333|P00338-4|LDHA;ENST00000538451.1_1_11:18424358-18428825:+|nuORF;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;nc|ENSG00000134333|P00338-5|LDHA;nc|ENSG00000134333|P00338-2|LDHA;ENSG00000166800|ENST00000280706|LDHAL6A;ENST00000398295.3_1_2:85004811-85005102:-|nuORF;ENSG00000166796|ENST00000541669|LDHC;ENSG00000111716|ENST00000350669|LDHB	nc|ENSG00000134333|P00338-4|LDHA	nc|ENSG00000134333|P00338-4|LDHA	MULTI-MSMS	A375_MHC_IP_R1	1	381.91583251953125	3	381.196478	1140.56761	0.52296	0.00019935	-0.31853	-0.00012142	0.20443	7.7928E-05	381.1963967686191	37.486	0.56256	37.486	37.198	37.761	0					33	10	5	0	0	0	0.2989	1	12679	12679		30.703	16.298	1	12662000			37264	14610	27266	27492	36295	36295					0.0029447556071318104
NLDSARFRY	9	Unmodified	_NLDSARFRY_					0	0	0		nc|ENSG00000134333|P00338-4|LDHA;ENST00000538451.1_1_11:18424358-18428825:+|nuORF;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;nc|ENSG00000134333|P00338-5|LDHA;nc|ENSG00000134333|P00338-2|LDHA;ENSG00000166800|ENST00000280706|LDHAL6A;ENST00000398295.3_1_2:85004811-85005102:-|nuORF;ENSG00000166796|ENST00000541669|LDHC;ENSG00000111716|ENST00000350669|LDHB	nc|ENSG00000134333|P00338-4|LDHA	nc|ENSG00000134333|P00338-4|LDHA	MULTI-MSMS	A375_MHC_IP_R2	2	381.5964050292969	3	381.196478	1140.56761	-0.45706	-0.00017423	0.39068	0.00014893	-0.066381	-2.5304E-05	381.196642047667	36.669	0.60964	37.44	37.157	37.767	0.7709					36	11	4	0	0	0	0.068071	2	13343	13343;13395		57.249	57.249	1	9618300			37265	14610	27266	27492	36296;36297	36296					0.0029447556071318104
NLDSESEHF	9	Unmodified	_NLDSESEHF_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	A375_MHC_IP_R2	2	539.6279296875	2	539.22781	1076.44107	-0.85346	-0.00046021	-2.3133	-0.0012474	-3.1668	-0.0017076	539.7278934567693	76.955	0.70679	77.698	77.303	78.01	0.74293					32	13	3	0	0	0	0.60101	1	29288	29288		14.838	6.0929	1	1543600			37266	5800	27267	27493	36298	36298					-0.0940949545508829
NLDSGTDLSFP	11	Unmodified	_NLDSGTDLSFP_					0	0	0		RB1|p.L743*|1|0.55|ENSG00000139687|chr13:48465013-48465043|TTGATCAAAGAAGAGGAGTATGATTCTATTA/-|frameshift_variant;RB1|p.L769Ffs*26|1|0.65|ENSG00000139687|chr13:48465088-48465089|-/T|frameshift_variant;RB1|p.L797Yfs*13|1|0.51|ENSG00000139687|chr13:48465268-48465268|T/-|frameshift_variant;ENSG00000139687|ENST00000267163|RB1	RB1|p.L743*|1|0.55|ENSG00000139687|chr13:48465013-48465043|TTGATCAAAGAAGAGGAGTATGATTCTATTA/-|frameshift_variant	RB1|p.L743*|1|0.55|ENSG00000139687|chr13:48465013-48465043|TTGATCAAAGAAGAGGAGTATGATTCTATTA/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	583.7077026367188	2	583.272218	1164.52988	-0.27741	-0.0001618	1.3109	0.00076461	1.0335	0.00060281	583.2723782959603	86.671	0.2541	87.404	87.255	87.509	0.733					7	4	2	0	0	0	0.62292	1	32935	32935		21.537	4.5947	1	533110			37267	5102	27268	27494	36299	36299					-0.0458008021544174
NLDSKLDFEVT	11	Unmodified	_NLDSKLDFEVT_					0	0	0		ENST00000479383.5_1_1:44267185-44297359:+|nuORF	ENST00000479383.5_1_1:44267185-44297359:+|nuORF	ENST00000479383.5_1_1:44267185-44297359:+|nuORF	MSMS	A375_MHC_IP_R2	2	427.64794921875	3	427.550475	1279.6296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.934	1	32.671	32.171	33.171	0.73691								0	0	0	0.16124	1	11321	11321		6.6235	0	1				37268	12472	27269	27495	36300	36300					0.000967373985076847
NLDSQRLQY	9	Unmodified	_NLDSQRLQY_					0	0	0		nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-7|UEVLD;nc|ENSG00000151116|Q8IX04-4|UEVLD	nc|ENSG00000151116|Q8IX04-3|UEVLD	nc|ENSG00000151116|Q8IX04-3|UEVLD	MULTI-SECPEP	A375_MHC_IP_R1	1	569.1881103515625	2	568.78837	1135.56219	-0.25969	-0.00014771	1.6719	0.00095096	1.4122	0.00080325	568.788254914085	40.388	0.71141	40.388	40.151	40.863	0					42	13	4	0	0	0	0.011145	1	13894	13894		118.89	55.667	1	35125000			37269	5880	27270	27496	36301	36301					-0.00017248021754312504
NLDSQRLQY	9	Unmodified	_NLDSQRLQY_					0	0	0		nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-7|UEVLD;nc|ENSG00000151116|Q8IX04-4|UEVLD	nc|ENSG00000151116|Q8IX04-3|UEVLD	nc|ENSG00000151116|Q8IX04-3|UEVLD	MULTI-MSMS	A375_MHC_IP_R2	2	569.2185668945312	2	568.78837	1135.56219	-0.37951	-0.00021586	1.74	0.00098968	1.3605	0.00077382	568.7882394818153	39.706	0.91333	40.481	40.067	40.98	0.77451					44	17	4	0	0	0	0.51106	1	14817	14817		19.257	6.3844	1	35388000			37270	5880	27270	27496	36302	36302					-0.00017248021754312504
NLDTWEWN	8	Unmodified	_NLDTWEWN_					0	0	0		ENSG00000165516|ENST00000298307|KLHDC2;ENST00000557063.5_1_14:50246474-50246525:+|nuORF;ENST00000555739.5_1_14:50246474-50249278:+|nuORF	ENSG00000165516|ENST00000298307|KLHDC2	ENSG00000165516|ENST00000298307|KLHDC2	MULTI-MSMS	A375_MHC_IP_R2	2	539.63427734375	2	539.235439	1076.45632	-1.134	-0.00061149	-0.042048	-2.2674E-05	-1.176	-0.00063416	539.2352734702699	57.898	0.70823	58.647	58.272	58.98	0.74894					27	13	3	0	0	0	0.7256	1	21870	21870		26.884	0	1	2374700			37271	6962	27271	27497	36303	36303					-0.07884583867257788
NLDVLLWF	8	Unmodified	_NLDVLLWF_					0	0	0			REV__ENSG00000121058|ENST00000240316|COIL	REV__ENSG00000121058|ENST00000240316|COIL	MSMS	A375_MHC_IP_R1	1	510.2232360839844	2	510.28166	1018.54877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.353	1	75.353	74.853	75.853	0								0	0	0	0.16876	1	27453	27453		26.341	5.4701	1		+		37272	18144	27272	27498	36304	36304					0.040235459369455384
NLDVNEEY	8	Unmodified	_NLDVNEEY_					0	0	0			REV__nc|ENSG00000001497|Q9Y4W2-3|LAS1L	REV__nc|ENSG00000001497|Q9Y4W2-3|LAS1L	MULTI-MSMS	A375_MHC_IP_R2	2	498.1408996582031	2	498.219454	994.424355	-0.73705	-0.00036721	0.012922	6.4378E-06	-0.72413	-0.00036078	498.219441888039	36.357	1.5774	37.128	36.698	38.275	0.7709					92	30	5	0	0	0	0.75322	1	13604	13604		19.439	5.9311	1	333020000	+		37273	27084	27273	27499	36305	36305					-0.07307996341046419
NLDVPHSY	8	Unmodified	_NLDVPHSY_					0	0	0		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-MSMS	A375_MHC_IP_R1	1	473.1799011230469	2	472.727249	943.439946	-0.4433	-0.00020956	0.035767	1.6908E-05	-0.40753	-0.00019265	472.72722953725724	43.819	0.50756	43.819	43.502	44.01	0					15	9	2	0	0	0	0.7256	1	15290	15290		26.884	12.302	1	2909400			37274	5850	27274	27500	36306	36306					-0.03403665033329162
NLDYLNFAWNL	11	Unmodified	_NLDYLNFAWNL_					0	0	0			REV__nc|ENSG00000120049|Q9NS61-8|KCNIP2	REV__nc|ENSG00000120049|Q9NS61-8|KCNIP2	MSMS	A375_MHC_IP_R2	2	461.6212463378906	3	461.562827	1381.66665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.606	1	37.377	36.877	37.877	0.7709								0	0	0	0.16297	1	13355	13355		1.3296	0	1		+		37275	18110	27275	27501	36307	36307					-0.00891546265074794
NLEAEIQSL	9	Unmodified	_NLEAEIQSL_					0	0	0			REV__nc|ENSG00000095319|Q5SRE5-2|NUP188	REV__nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-SECPEP	A375_MHC_IP_R1	1	508.21319580078125	2	508.766571	1015.51859	-0.36096	-0.00018364	-0.051314	-2.6107E-05	-0.41227	-0.00020975	508.766588086116	79.562	0.51462	79.562	79.161	79.676	0					11	9	2	0	0	0	0.69507	1	29009	29009		19.257	5.3509	1	1042100	+		37276	16991	27276	27502	36308	36308					0.011451424810957178
NLECQKLI	8	Unmodified	_NLECQKLI_					0	0	0		KLHL1|p.D423N|1|0.23|ENSG00000150361|chr13:69839123-69839123|C/T|missense_variant	KLHL1|p.D423N|1|0.23|ENSG00000150361|chr13:69839123-69839123|C/T|missense_variant	KLHL1|p.D423N|1|0.23|ENSG00000150361|chr13:69839123-69839123|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	480.6919860839844	2	480.762778	959.511002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.979	1	72.979	72.479	73.479	0								0	0	0	0.16876	1	26562	26562		23.148	0	1				37277	14224	27277	27503	36309	36309					0.02962711679822405
NLEEAHEEL	9	Unmodified	_NLEEAHEEL_					0	0	0			REV__ENSG00000139780|ENST00000267273|METTL21C	REV__ENSG00000139780|ENST00000267273|METTL21C	MULTI-MSMS	A375_MHC_IP_R1	1	542.6510620117188	2	542.251286	1082.48802	-0.54651	-0.00029635	-0.3515	-0.0001906	-0.89801	-0.00048695	542.2510686376692	102.05	1.0615	102.05	101.65	102.71	0					53	20	4	0	0	0	0.5339	1	37459	37459		18.135	18.135	1	8765100	+		37278	19182	27278	27504	36310	36310					-0.04992635903954579
NLEEIGKRLI	10	Unmodified	_NLEEIGKRLI_					0	0	0			REV__ENST00000466482.5_1_3:98451275-98491689:+|nuORF	REV__ENST00000466482.5_1_3:98451275-98491689:+|nuORF	MSMS	A375_MHC_IP_R2	2	592.9163208007812	2	592.853512	1183.69247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.49	1	75.228	74.728	75.728	0.73752								0	0	0	0.15372	1	28275	28275		8.7454	0	1		+		37279	25038	27279	27505	36311	36311					0.10797347977245408
NLEENEWH	8	Unmodified	_NLEENEWH_					0	0	0			REV__nc|ENSG00000155906|Q9NWS8-2|RMND1	REV__nc|ENSG00000155906|Q9NWS8-2|RMND1	MULTI-MSMS	A375_MHC_IP_R2	2	537.2277221679688	2	535.73052	1069.44649	-0.9467	-0.00050718	-0.47252	-0.00025314	-1.4192	-0.00076032	535.7301213616635	66.629	1.017	67.366	67.035	68.052	0.73631					52	19	4	0	0	0	0.77624	1	25321	25321		8.5933	0	1	12881000	+		37280	19949	27280	27506	36312	36312					-0.08545771872627483
NLEKLYLYFNK	11	Unmodified	_NLEKLYLYFNK_					0	0	0		nc|ENSG00000131951|Q6ZRR7-2|LRRC9;nc|ENSG00000131951|Q6ZRR7|LRRC9;ENSG00000131951|ENST00000570145|LRRC9	nc|ENSG00000131951|Q6ZRR7-2|LRRC9	nc|ENSG00000131951|Q6ZRR7-2|LRRC9	MULTI-MSMS	A375_MHC_IP_R2	2	723.2950439453125	2	722.895377	1443.7762	-0.76184	-0.00055073	0.0020655	1.4931E-06	-0.75978	-0.00054924	722.8953641591726	73.167	0.40786	73.902	73.684	74.091	0.73541					12	7	3	0	0	0	0.67565	1	27794	27794		17.443	0.32975	1	1290800			37281	4360	27281	27507	36313	36313					0.07206459354279104
NLEKSLRLSW	10	Unmodified	_NLEKSLRLSW_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MSMS	A375_MHC_IP_R2	2	623.6143188476562	2	623.351137	1244.68772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.796	1	95.541	95.041	96.041	0.74474								0	0	0	0.15451	1	36019	36019		6.2058	0.47393	1		+		37282	21862	27282	27508	36314	36314					0.07516463834463138
NLEKTYRLKK	10	Unmodified	_NLEKTYRLKK_					0	0	0		ENST00000524045.6_1_8:106797143-106799334:-|nuORF	ENST00000524045.6_1_8:106797143-106799334:-|nuORF	ENST00000524045.6_1_8:106797143-106799334:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1293.8580322265625	1	1292.7685	1291.76122	0.38537	0.00049819	-2.0946	-0.0027078	-1.7092	-0.0022096	1292.7673189519894	134.61	0.40501	134.75	134.65	135.05	0.13901					11	7	2	0	0	0	0.72078	1	53009	53009		2.9952	0.49676	1	4915100			37283	13053	27283	27509	36315	36315					0.12701012276920665
NLENDFADPH	10	Unmodified	_NLENDFADPH_					0	0	0			REV__UCK2|p.I94N|1|0.37|ENSG00000143179|chr1:165891247-165891247|T/A|missense_variant	REV__UCK2|p.I94N|1|0.37|ENSG00000143179|chr1:165891247-165891247|T/A|missense_variant	MSMS	A375_MHC_IP_R1	1	586.24755859375	2	586.25436	1170.49417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.7	1	133.7	133.2	134.2	0								0	0	0	0.1524	1	51562	51562		13.042	3.6593	1		+		37284	28941	27284	27510	36316	36316					-0.08426117672433975
NLENQTLW	8	Unmodified	_NLENQTLW_					0	0	0			REV__ENST00000434755.5_1_7:30468991-30485839:-|nuORF	REV__ENST00000434755.5_1_7:30468991-30485839:-|nuORF	MSMS	A375_MHC_IP_R1	1	509.17364501953125	2	509.253631	1016.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.227	1	76.227	75.727	76.727	0								0	0	0	0.16876	1	27783	27783		14.838	0	1		+		37285	17432	27285	27511	36317	36317					-0.014877069705221402
NLEQQKQLY	9	Unmodified	_NLEQQKQLY_					0	0	0		nc|ENSG00000116497|Q96BU1-2|S100PBP;ENST00000531123.5_1_1:33290993-33299636:+|nuORF;ENST00000356689.7_1_1:33290993-33299636:+|nuORF;ENSG00000116497|ENST00000373475|S100PBP	nc|ENSG00000116497|Q96BU1-2|S100PBP	nc|ENSG00000116497|Q96BU1-2|S100PBP	MULTI-SECPEP	A375_MHC_IP_R2	2	582.7355346679688	2	582.306395	1162.59824	-0.27516	-0.00016023	-0.54073	-0.00031487	-0.81589	-0.0004751	582.8076302353048	90.331	0.30503	91.063	90.801	91.106	0.7318					6	5	2	0	0	0	0.77834	1	34306	34306		4.756	0	1	883280			37286	3401	27286	27512	36318	36318					0.023442091551032718
NLERLGYSEDG	11	Unmodified	_NLERLGYSEDG_					0	0	0		ENSG00000148602|ENST00000372105|LRIT1	ENSG00000148602|ENST00000372105|LRIT1	ENSG00000148602|ENST00000372105|LRIT1	MULTI-SECPEP	A375_MHC_IP_R1	1	626.5336303710938	2	626.793849	1251.57314	-0.57853	-0.00036262	3.0521	0.0019131	2.4736	0.0015504	627.2968459726371	96.318	0.96162	96.318	95.465	96.427	0					18	18	2	0	0	0	0.97182	1	35275	35275		18.373	16.529	1	1154000			37287	5753	27287	27513	36319	36319					-0.04257890438157119
NLETWTRFER	10	Unmodified	_NLETWTRFER_					0	0	0			REV__ENSG00000171316|ENST00000423902|CHD7	REV__ENSG00000171316|ENST00000423902|CHD7	MULTI-SECPEP	A375_MHC_IP_R2	2	450.58856201171875	3	451.229959	1350.66805	-0.27735	-0.00012515	-0.38147	-0.00017213	-0.65882	-0.00029728	451.22958348263563	73.091	0.56109	73.827	73.53	74.091	0.73541					15	10	2	0	0	0	0.94798	1	27658	27658		1.3296	0.21989	1	1459500	+		37288	21060	27288	27514	36320	36320					0.00674087823699665
NLEVHEQSG	9	Unmodified	_NLEVHEQSG_					0	0	0			REV__ENSG00000115604|ENST00000233957|IL18R1	REV__ENSG00000115604|ENST00000233957|IL18R1	MULTI-SECPEP	A375_MHC_IP_R2	2	506.185302734375	2	506.738345	1011.46214	-0.59292	-0.00030045	-0.56518	-0.0002864	-1.1581	-0.00058685	507.23940509664345	43.382	0.35572	44.155	43.977	44.333	0.7724					9	6	2	0	0	0	0.65246	1	16211	16211		15.847	6.4641	1	1007800	+		37289	17898	27289	27515	36321	36321					-0.04313485355555713
NLFDRVVTL	9	Unmodified	_NLFDRVVTL_					0	0	0		ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123;ENST00000487805.6_1_3:49750857-49758735:+|nuORF	ENSG00000164068|ENST00000327697|RNF123	ENSG00000164068|ENST00000327697|RNF123	MULTI-SECPEP	A375_MHC_IP_R1	1	539.20849609375	2	538.808574	1075.60259	-0.40193	-0.00021656	0.13901	7.4898E-05	-0.26292	-0.00014166	538.8086246373371	108.54	0.91164	108.54	108.21	109.12	0					40	17	4	0	0	0	0.010931	1	39749	39749		136.39	61.463	1	21062000			37290	6769	27290	27516	36322	36322					0.06781718368665679
NLFDRVVTL	9	Unmodified	_NLFDRVVTL_					0	0	0		ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123;ENST00000487805.6_1_3:49750857-49758735:+|nuORF	ENSG00000164068|ENST00000327697|RNF123	ENSG00000164068|ENST00000327697|RNF123	MULTI-SECPEP	A375_MHC_IP_R2	2	539.2076416015625	2	538.808574	1075.60259	-0.89955	-0.00048469	-0.11721	-6.3152E-05	-1.0168	-0.00054784	538.8084540581906	107.62	1.1234	108.38	107.95	109.07	0.75436					47	21	4	0	0	0	0.044425	1	40605	40605		96.936	40.758	1	17875000			37291	6769	27290	27516	36323	36323					0.06781718368665679
NLFDYEDPC	9	Unmodified	_NLFDYEDPC_					0	0	0			REV__CCDC138|p.S35L|1|0.32|ENSG00000163006|chr2:108788042-108788042|C/T|missense_variant	REV__CCDC138|p.S35L|1|0.32|ENSG00000163006|chr2:108788042-108788042|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	558.2286376953125	2	558.221139	1114.42773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.67	1	134.67	134.17	135.17	0								0	0	0	0.15486	1	51932	51932		7.9102	0	1		+		37292	15591	27291	27517	36324	36324					-0.12491069558700474
NLFEWHFTV	9	Unmodified	_NLFEWHFTV_					0	0	0		ENSG00000198833|ENST00000435041|UBE2J1	ENSG00000198833|ENST00000435041|UBE2J1	ENSG00000198833|ENST00000435041|UBE2J1	MULTI-MSMS	A375_MHC_IP_R2	2	597.1925659179688	2	596.792924	1191.57129	-0.51525	-0.0003075	-0.49162	-0.00029339	-1.0069	-0.00060089	596.7925260229282	126.01	0.25403	126.3	126.23	126.48	0.2951					6	4	2	0	0	0	0.2002	1	49303	49303		37.974	20.861	1	6338000			37293	9340	27292	27518	36325	36325					-0.016828546654323873
NLFFASAFAF	10	Unmodified	_NLFFASAFAF_					0	0	0		nc|ENSG00000050628|P43115-8|PTGER3;nc|ENSG00000050628|P43115-3|PTGER3;nc|ENSG00000050628|P43115-4|PTGER3;nc|ENSG00000050628|P43115-2|PTGER3;ENSG00000050628|ENST00000306666|PTGER3;nc|ENSG00000050628|P43115-7|PTGER3;nc|ENSG00000050628|P43115-5|PTGER3;nc|ENSG00000050628|P43115-6|PTGER3;nc|ENSG00000050628|P43115-12|PTGER3;nc|ENSG00000050628|P43115-9|PTGER3;nc|ENSG00000050628|P43115-11|PTGER3;nc|ENSG00000050628|P43115-10|PTGER3	nc|ENSG00000050628|P43115-8|PTGER3;nc|ENSG00000050628|P43115-9|PTGER3	nc|ENSG00000050628|P43115-8|PTGER3	MULTI-SECPEP	A375_MHC_IP_R2	2	567.6798095703125	2	567.784567	1133.55458	-0.35359	-0.00020076	1.0955	0.00062203	0.74194	0.00042126	568.2865438901929	73.91	0.66154	74.648	74.398	75.06	0.73752					17	12	2	0	0	0	0.90853	1	28064	28064		6.7232	6.7232	1	13332000			37294	14467;14466	27293	27519	36326	36326					-0.006853555513998799
NLFFIFLSYVL	11	Unmodified	_NLFFIFLSYVL_					0	0	0		OR51I2|p.D210N|1|0.42|ENSG00000187918|chr11:5454116-5454116|G/A|missense_variant	OR51I2|p.D210N|1|0.42|ENSG00000187918|chr11:5454116-5454116|G/A|missense_variant	OR51I2|p.D210N|1|0.42|ENSG00000187918|chr11:5454116-5454116|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	688.7871704101562	2	688.386657	1374.75876	-0.85311	-0.00058727	0.10379	7.1451E-05	-0.74932	-0.00051582	688.3863857398279	131.5	1.0632	131.5	130.87	131.93	0					52	20	3	0	0	0	0.7342	1	50530	50530		4.897	1.6157	1	22300000			37295	15085	27294	27520	36327	36327					0.08637163819298621
NLFFIFLSYVL	11	Unmodified	_NLFFIFLSYVL_					0	0	0		OR51I2|p.D210N|1|0.42|ENSG00000187918|chr11:5454116-5454116|G/A|missense_variant	OR51I2|p.D210N|1|0.42|ENSG00000187918|chr11:5454116-5454116|G/A|missense_variant	OR51I2|p.D210N|1|0.42|ENSG00000187918|chr11:5454116-5454116|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	689.645751953125	2	688.386657	1374.75876	-0.86676	-0.00059666	0.37858	0.00026061	-0.48817	-0.00033605	688.386389979804	132.37	1.9295	132.37	131.58	133.51	0					127	37	6	0	0	0	0.7342	1	50809	50809		4.897	0.36815	1	57612000			37296	15085	27294	27520	36328	36328					0.08637163819298621
NLFFMCVL	8	Unmodified	_NLFFMCVL_					0	0	0			REV__ENST00000507606.2_1_7:135359502-135359658:+|nuORF	REV__ENST00000507606.2_1_7:135359502-135359658:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	495.2130432128906	2	493.745542	985.476531	-0.018862	-9.313E-06	0.20535	0.00010139	0.18649	9.2079E-05	493.7454844528599	44.502	1.1735	44.502	44.01	45.183	0					63	22	6	0	0	0	0.7758	1	15520	15520		10.183	0.83596	1	43991000	+		37297	25570	27295	27521	36329	36329					-0.01678827732632726
NLFFWFFPVQ	10	Unmodified	_NLFFWFFPVQ_					0	0	0		CPVL|p.A95V|1|0.22|ENSG00000106066|chr7:29112708-29112708|G/A|missense_variant	CPVL|p.A95V|1|0.22|ENSG00000106066|chr7:29112708-29112708|G/A|missense_variant	CPVL|p.A95V|1|0.22|ENSG00000106066|chr7:29112708-29112708|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	672.8073120117188	2	672.842416	1343.67028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.24	1	130.24	129.74	130.74	0								0	0	0	0.15479	1	50104	50104		5.2969	0.39987	1				37298	653	27296	27522	36330	36330					0.012191682994625808
NLFKRSNQY	9	Unmodified	_NLFKRSNQY_					0	0	0			REV__ENST00000310421.4_1_8:67545049-67545196:-|nuORF	REV__ENST00000310421.4_1_8:67545049-67545196:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	585.7057495117188	2	585.306729	1168.59891	-0.47342	-0.00027709	-1.2082	-0.00070717	-1.6816	-0.00098427	585.3059222623615	24.126	0.25395	24.126	23.991	24.245	0					7	4	2	0	0	0	0.51106	1	6801	6801		19.257	2.3147	1	7962900	+		37299	23500	27297	27523	36331	36331					0.021350485948232745
NLFKRSNQY	9	Unmodified	_NLFKRSNQY_					0	0	0			REV__ENST00000310421.4_1_8:67545049-67545196:-|nuORF	REV__ENST00000310421.4_1_8:67545049-67545196:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	585.306729	1168.59891	-0.47342	-0.00027709	-1.2082	-0.00070717	-1.6816	-0.00098427	585.3059222623615	24.126	0.25395	24.126	23.991	24.245	0	0.035858	0.00086777	NaN	19.257	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7962900	+		37300	23500	27297	27523							0.021350485948232745
NLFLWNRFKEY	11	Unmodified	_NLFLWNRFKEY_					0	0	0			REV__nc|ENSG00000170832|Q8NFA0-2|USP32	REV__nc|ENSG00000170832|Q8NFA0-2|USP32	MSMS	A375_MHC_IP_R2	2	510.6466979980469	3	510.601504	1528.78268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.42	1	23.039	22.539	23.539	0.61932								0	0	0	0.16232	1	7121	7121		6.6235	5.2938	1		+		37301	21023	27298	27524	36332	36332					0.03944397305644998
NLFSFFFF	8	Unmodified	_NLFSFFFF_					0	0	0		ENST00000531017.5_1_19:50314409-50316363:-|nuORF	ENST00000531017.5_1_19:50314409-50316363:-|nuORF	ENST00000531017.5_1_19:50314409-50316363:-|nuORF	MSMS	A375_MHC_IP_R2	2	534.6786499023438	2	534.763104	1067.51165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.259	1	65.997	65.497	66.497	0.73811								0	0	0	0.16876	1	24742	24742		24.674	4.2203	1				37302	13162	27299	27525	36333	36333					-0.019401256088031005
NLFVFLWLI	9	Unmodified	_NLFVFLWLI_					0	0	0		nc|ENSG00000137968|Q8NCS7|SLC44A5;nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5	nc|ENSG00000137968|Q8NCS7|SLC44A5	nc|ENSG00000137968|Q8NCS7|SLC44A5	MULTI-SECPEP	A375_MHC_IP_R1	1	583.2442626953125	2	582.844428	1163.6743	-0.58533	-0.00034116	-0.85624	-0.00049905	-1.4416	-0.00084021	582.844311648803	142.9	0.50421	142.9	142.64	143.14	0					14	9	2	0	0	0	0.81254	1	54857	54857		2.0598	1.535	1	1016000			37303	14630	27300	27526	36334	36334					0.09901257793194418
NLGDFLIFL	9	Unmodified	_NLGDFLIFL_					0	0	0		ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	MULTI-MSMS	A375_MHC_IP_R1	1	526.6944580078125	2	526.294768	1050.57498	-0.83781	-0.00044094	-0.14088	-7.4142E-05	-0.97869	-0.00051508	526.2946492876882	140.67	0.46609	140.67	140.39	140.86	0					15	8	3	0	0	0	0.04699	1	54024	54024		81.89	24.419	1	4396500			37304	2932	27301	27527	36335	36335					0.051718151084287456
NLGDFLIFL	9	Unmodified	_NLGDFLIFL_					0	0	0		ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	MULTI-MSMS	A375_MHC_IP_R1	1	1051.4908447265625	1	1051.58226	1050.57498	-0.20971	-0.00022053	-0.49017	-0.00051545	-0.69988	-0.00073598	1051.58192481874	141.74	0.45453	141.74	141.47	141.93	0					12	8	2	0	0	0	0.6421	1	54357	54357		17.113	0	1	746410			37305	2932	27301	27527	36336	36336					0.051718151084287456
NLGDFLIFL	9	Unmodified	_NLGDFLIFL_					0	0	0		ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	MULTI-SECPEP	A375_MHC_IP_R2	2	526.6946411132812	2	526.294768	1050.57498	-0.26884	-0.00014149	-0.60355	-0.00031764	-0.87238	-0.00045913	526.2944163963176	140.64	0.355	140.68	140.45	140.81	0.04216					12	6	3	0	0	0	0.10103	1	55045	55045		71.922	14.451	1	3170900			37306	2932	27301	27527	36337	36337					0.051718151084287456
NLGDFLIFL	9	Unmodified	_NLGDFLIFL_					0	0	0		ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	MULTI-MATCH	A375_MHC_IP_R2	2		1	1051.58226	1050.57498	0.24784	0.00026063	-0.017856	-1.8777E-05	0.22999	0.00024185	1051.5819223862838	141.79	0.4581	141.82	141.47	141.92	0.030746	0.035729	0.00039702	NaN	17.113	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	900600			37307	2932	27301	27527							0.051718151084287456
NLGDKVEAVL	10	Unmodified	_NLGDKVEAVL_					0	0	0		tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	528.6609497070312	2	529.298039	1056.58152	-0.62278	-0.00032963	-1.8733	-0.00099154	-2.4961	-0.0013212	529.2972862636246	74.7	0.35629	75.438	75.214	75.57	0.73752					10	6	2	0	0	0	0.90513	1	28318	28318		12.241	0	1	821250			37308	29771	27302	27528	36338	36338					0.055497082691545074
NLGEVHIAY	9	Unmodified	_NLGEVHIAY_					0	0	0			REV__nc|ENSG00000100241|O95248|SBF1	REV__nc|ENSG00000100241|O95248|SBF1	MULTI-SECPEP	A375_MHC_IP_R1	1	508.6453857421875	2	508.263999	1014.51345	0.075458	3.8353E-05	0.15268	7.7601E-05	0.22814	0.00011595	508.26418277654966	45.048	0.55614	45.048	44.878	45.434	0					18	10	2	0	0	0	0.71341	1	15825	15825		13.042	0	1	1941700	+		37309	17063	27303	27529	36339	36339					0.006768834091303688
NLGLPLSPSF	10	Unmodified	_NLGLPLSPSF_					0	0	0			REV__nc|ENSG00000249158|Q9Y5I1-2|PCDHA11	REV__nc|ENSG00000249158|Q9Y5I1-2|PCDHA11	MULTI-MSMS	A375_MHC_IP_R1	1	522.6893310546875	2	522.78985	1043.56515	-0.41523	-0.00021708	-0.2001	-0.00010461	-0.61533	-0.00032169	522.7897569054571	89.073	1.116	89.073	88.764	89.88	0					47	21	4	0	0	0	0.66712	1	32992	32992		15.847	4.2069	1	9607100	+		37310	22835	27304	27530	36340	36340					0.04510627103036313
NLGNVSALRTF	11	Unmodified	_NLGNVSALRTF_					0	0	0		nc|ENSG00000169432|Q15858-3|SCN9A;ENSG00000169432|ENST00000642356|SCN9A;ENST00000472119.1_1_2:167159564-167162327:-|nuORF;nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;nc|ENSG00000196876|Q9UQD0-4|SCN8A;nc|ENSG00000136531|Q99250-2|SCN2A	nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000196876|Q9UQD0-5|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	MULTI-MSMS	A375_MHC_IP_R1	1	397.889892578125	3	397.887533	1190.64077	-0.35278	-0.00014037	-0.90554	-0.0003603	-1.2583	-0.00050067	397.8874746394113	32.455	0.71137	32.455	31.973	32.684	0					17	12	2	0	0	0	0.72851	1	10560	10560		10.315	1.339	1	3590200			37311	14841;7407	27305	27531	36341	36341					0.053076042833026804
NLHDFQKLLAQ	11	Unmodified	_NLHDFQKLLAQ_					0	0	0			REV__nc|ENSG00000070081|P80303-2|NUCB2	REV__nc|ENSG00000070081|P80303-2|NUCB2	MULTI-SECPEP	A375_MHC_IP_R2	2	443.30999755859375	3	442.910338	1325.70918	-0.36449	-0.00016144	-0.092736	-4.1074E-05	-0.45722	-0.00020251	442.9102409929537	67.312	0.65994	68.049	67.801	68.461	0.73631					23	12	3	0	0	0	0.99661	1	25504	25504		7.846	1.6117	1	2625700	+		37312	16566	27306	27532	36342	36342					0.059358488632142326
NLHLHSVFNL	10	Unmodified	_NLHLHSVFNL_					0	0	0		MLT1F1-int_dup148|chr15:38325957-38327301:+|1.4650218780754924|0.4106847790855086|1.83|471.0|77|2|anti-sense	MLT1F1-int_dup148|chr15:38325957-38327301:+|1.4650218780754924|0.4106847790855086|1.83|471.0|77|2|anti-sense	MLT1F1-int_dup148|chr15:38325957-38327301:+|1.4650218780754924|0.4106847790855086|1.83|471.0|77|2|anti-sense	MSMS	A375_MHC_IP_R1	1	597.2246704101562	2	597.324922	1192.63529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.54	1	132.54	132.04	133.04	0								0	0	0	0.15391	1	51108	51108		8.1555	1.4324	1				37313	14388	27307	27533	36343	36343					0.046679254915488855
NLHLRKRWKRE	11	Unmodified	_NLHLRKRWKRE_					0	0	0		ENSG00000185947|ENST00000300870|ZNF267;ENST00000575471.2_1_16:31925765-31927799:+|nuORF	ENSG00000185947|ENST00000300870|ZNF267	ENSG00000185947|ENST00000300870|ZNF267	MULTI-SECPEP	A375_MHC_IP_R2	2	512.3706665039062	3	512.639176	1534.8957	-0.56425	-0.00028926	0.84691	0.00043416	0.28266	0.0001449	512.6396573689691	143.14	0.60556	143.17	142.89	143.5	0.030731					18	11	2	0	0	0	1.0015	1	55931	55931		0.094841	0.021578	1	3112000			37314	8709	27308	27534	36344	36344					0.14964510542199605
NLHMKRFV	8	Unmodified	_NLHMKRFV_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	MULTI-SECPEP	A375_MHC_IP_R1	1	522.6907348632812	2	522.792204	1043.56985	-0.65851	-0.00034426	0.54465	0.00028474	-0.11386	-5.9523E-05	522.7920405267363	66.047	0.45535	66.047	65.819	66.275	0					10	8	2	0	0	0	0.972	1	23910	23910		5.2307	0	1	1284700			37315	3360	27309	27535	36345	36345					0.04981232764816923
NLIALWSERQF	11	Unmodified	_NLIALWSERQF_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|155|1|anti-sense	L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|155|1|anti-sense	L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|155|1|anti-sense	MULTI-MSMS	A375_MHC_IP_R2	2	459.98211669921875	3	459.582221	1375.72483	-0.51727	-0.00023773	0.23675	0.0001088	-0.28052	-0.00012892	459.5823040438969	27.128	1.1735	27.807	27.128	28.301	0.67857					76	22	5	0	0	0	0.731	1	9309	9309		7.9454	0	1	66654000			37316	14267	27310	27536	36346	36346					0.05200135380209758
NLIDLDDLYV	10	Unmodified	_NLIDLDDLYV_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	A375_MHC_IP_R1	1	597.2079467773438	2	596.808436	1191.60232	-0.64541	-0.00038519	0.049446	2.951E-05	-0.59596	-0.00035568	596.80837044932	132.01	0.75644	132.01	131.83	132.59	0					31	14	4	0	0	0	0.011513	1	50900	50900		118.07	52.833	1	56224000			37317	3978	27311	27537	36347	36347					0.014182538581508197
NLIDLDDLYV	10	Unmodified	_NLIDLDDLYV_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	A375_MHC_IP_R2	2	597.2080688476562	2	596.808436	1191.60232	-0.53401	-0.0003187	-0.09181	-5.4793E-05	-0.62582	-0.0003735	596.8083367376364	131.84	0.45361	132.03	131.85	132.3	0.18953					22	8	4	0	0	0	0.011212	1	51862	51862		125.53	60.294	1	55165000			37318	3978	27311	27537	36348	36348					0.014182538581508197
NLIEINIEDP	10	Unmodified	_NLIEINIEDP_					0	0	0			REV__nc|ENSG00000156256|Q9Y5T5-4|USP16	REV__nc|ENSG00000156256|Q9Y5T5-4|USP16	MULTI-SECPEP	A375_MHC_IP_R2	2	585.7055053710938	2	585.306061	1168.59757	-0.51602	-0.00030203	-0.3049	-0.00017846	-0.82092	-0.00048049	585.3058632780262	30.659	0.40266	31.377	31.165	31.567	0.71857					17	7	3	0	0	0	0.78163	1	10789	10789		28.495	3.5035	1	7434700	+		37319	19973	27312	27538	36349	36349					0.020013697153899557
NLIEVNEEV	9	Unmodified	_NLIEVNEEV_					0	0	0		ENST00000467004.5_1_7:6838857-6844768:-|nuORF;ENST00000474507.1_1_7:5959397-5965315:+|nuORF;ENST00000468078.1_1_7:6838857-6841171:-|nuORF;ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1	ENST00000467004.5_1_7:6838857-6844768:-|nuORF;ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-SECPEP	A375_MHC_IP_R1	1	530.1722412109375	2	529.771854	1057.52915	-0.43386	-0.00022985	0.11994	6.3542E-05	-0.31392	-0.00016631	529.7718645113721	82.088	0.66061	82.088	81.758	82.418	0					27	12	3	0	0	0	0.05021	1	29958	29958		78.728	34.87	1	8118900			37320	3797;12270	27313	27539	36350	36350					0.002691251355145141
NLIEVNEEV	9	Unmodified	_NLIEVNEEV_					0	0	0		ENST00000467004.5_1_7:6838857-6844768:-|nuORF;ENST00000474507.1_1_7:5959397-5965315:+|nuORF;ENST00000468078.1_1_7:6838857-6841171:-|nuORF;ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1	ENST00000467004.5_1_7:6838857-6844768:-|nuORF;ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-SECPEP	A375_MHC_IP_R2	2	530.1714477539062	2	529.771854	1057.52915	-0.67876	-0.00035959	-0.07687	-4.0724E-05	-0.75563	-0.00040031	529.771803018699	81.361	0.86171	82.103	81.671	82.533	0.74293					31	16	3	0	0	0	0.010931	1	30845	30845		114.19	31.657	1	9282800			37321	3797;12270	27313	27539	36351	36351					0.002691251355145141
NLIEYWCM	8	Unmodified	_NLIEYWCM_					0	0	0		ENSG00000164080|ENST00000684192|RAD54L2;ENST00000487093.5_1_3:51669772-51697433:+|nuORF	ENSG00000164080|ENST00000684192|RAD54L2	ENSG00000164080|ENST00000684192|RAD54L2	MULTI-MSMS	A375_MHC_IP_R1	1	536.6531982421875	2	536.235538	1070.45652	-0.71784	-0.00038493	0.051416	2.7571E-05	-0.66642	-0.00035736	536.2360004940404	73.361	0.35443	73.361	73.235	73.589	0					8	6	2	0	0	0	0.76654	1	26771	26771		15.847	3.3156	1	928830			37322	6773	27314	27540	36352	36352					-0.07588623463243493
NLIIHFIEMLK	11	Unmodified	_NLIIHFIEMLK_					0	0	0			REV__nc|ENSG00000100325|Q9H1I8-2|ASCC2	REV__nc|ENSG00000100325|Q9H1I8-2|ASCC2	MULTI-MSMS	A375_MHC_IP_R2	2	686.2962646484375	2	685.896866	1369.77918	-0.4702	-0.00032251	-0.58545	-0.00040156	-1.0556	-0.00072407	685.8966488275825	143.09	0.76089	143.12	142.53	143.29	0.030731					28	14	3	0	0	0	0.73078	1	55898	55898		8.1555	3.2585	1	2665400	+		37323	17074	27315	27541	36353	36353					0.10908011207447998
NLIIHFIEMLK	11	Unmodified	_NLIIHFIEMLK_					0	0	0			REV__nc|ENSG00000100325|Q9H1I8-2|ASCC2	REV__nc|ENSG00000100325|Q9H1I8-2|ASCC2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	685.896866	1369.77918	-0.4702	-0.00032251	-0.58545	-0.00040156	-1.0556	-0.00072407	685.8966488275825	143.09	0.76089	143.12	142.53	143.29	0.030731	0.074502	-0.00047411	NaN	8.1555	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2665400	+		37324	17074	27315	27541							0.10908011207447998
NLINNIFEL	9	Unmodified	_NLINNIFEL_					0	0	0		nc|ENSG00000113441|Q9UIQ6-3|LNPEP;nc|ENSG00000113441|Q9UIQ6-2|LNPEP;ENSG00000113441|ENST00000231368|LNPEP	nc|ENSG00000113441|Q9UIQ6-3|LNPEP	nc|ENSG00000113441|Q9UIQ6-3|LNPEP	MULTI-MSMS	A375_MHC_IP_R1	1	545.7003784179688	2	545.300581	1088.58661	-0.79575	-0.00043392	0.17764	9.6866E-05	-0.61811	-0.00033706	545.3005912081245	132.78	0.25476	132.78	132.64	132.89	0					10	4	3	0	0	0	0.0095277	1	51216	51216		108	32.236	1	10645000			37325	3151	27316	27542	36354	36354					0.045860121317673475
NLINNIFEL	9	Unmodified	_NLINNIFEL_					0	0	0		nc|ENSG00000113441|Q9UIQ6-3|LNPEP;nc|ENSG00000113441|Q9UIQ6-2|LNPEP;ENSG00000113441|ENST00000231368|LNPEP	nc|ENSG00000113441|Q9UIQ6-3|LNPEP	nc|ENSG00000113441|Q9UIQ6-3|LNPEP	MULTI-MSMS	A375_MHC_IP_R2	2	545.7002563476562	2	545.300581	1088.58661	-0.75118	-0.00040962	-0.37368	-0.00020377	-1.1249	-0.00061339	545.3002602044947	132.6	0.25391	132.79	132.66	132.92	0.18953					10	4	3	0	0	0	0.0095277	1	52169	52169		108	25.468	1	8624100			37326	3151	27316	27542	36355	36355					0.045860121317673475
NLIPYSPDV	9	Unmodified	_NLIPYSPDV_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000461353.1_1_1:19545799-19546215:-|nuORF	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-SECPEP	A375_MHC_IP_R1	1	509.666015625	2	509.266207	1016.51786	-0.3856	-0.00019638	0.22373	0.00011394	-0.16188	-8.244E-05	509.2663060604187	103.17	0.61035	103.17	102.86	103.47	0					18	11	2	0	0	0	0.46045	1	37934	37934		29.082	8.628	1	2052900			37327	4092	27317	27543	36356	36356					0.010263478320553077
NLIPYSPDV	9	Unmodified	_NLIPYSPDV_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000461353.1_1_1:19545799-19546215:-|nuORF	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-SECPEP	A375_MHC_IP_R1	1	1017.7720336914062	1	1017.52514	1016.51786	0.22343	0.00022735	0.32042	0.00032603	0.54385	0.00055338	1017.5254981499629	103.23	0.55981	103.23	102.91	103.47	0					18	10	2	0	0	0	0.059859	1	37906	37906		81.89	43.916	1	4986700			37328	4092	27317	27543	36357	36357					0.010263478320553077
NLIPYSPDV	9	Unmodified	_NLIPYSPDV_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000461353.1_1_1:19545799-19546215:-|nuORF	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	A375_MHC_IP_R2	2	509.6657409667969	2	509.266207	1016.51786	-0.7459	-0.00037986	0.39043	0.00019883	-0.35547	-0.00018103	509.2663544980537	102.48	0.76354	103.24	102.92	103.68	0.76428					18	14	2	0	0	0	0.026268	1	38829	38829		78.149	25.881	1	1508700			37329	4092	27317	27543	36358	36358					0.010263478320553077
NLIPYSPDV	9	Unmodified	_NLIPYSPDV_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000461353.1_1_1:19545799-19546215:-|nuORF	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MATCH	A375_MHC_IP_R2	2		1	1017.52514	1016.51786	0.025795	2.6247E-05	-0.1702	-0.00017319	-0.14441	-0.00014694	1017.5250296821832	102.47	0.55872	103.24	102.97	103.53	0.76428	0.0050558	-0.00020937	NaN	81.89	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3730600			37330	4092	27317	27543							0.010263478320553077
NLIQAKKLY	9	Unmodified	_NLIQAKKLY_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	A375_MHC_IP_R1	1	545.7015380859375	2	545.834591	1089.65463	-0.57482	-0.00031376	-4.2213	-0.0023042	-4.7962	-0.0026179	546.332277117697	87.551	0.35674	87.551	87.39	87.747	0					8	6	2	0	0	0	0.71541	1	32121	32121		11.64	0.81637	1	858520	+		37331	18059	27318	27544	36359	36359					0.11338881782421595
NLIQAKKQV	9	Unmodified	_NLIQAKKQV_					0	0	0			REV__DOCK9|p.T62A|1|0.44|ENSG00000088387|chr13:98955494-98955494|T/C|missense_variant	REV__DOCK9|p.T62A|1|0.44|ENSG00000088387|chr13:98955494-98955494|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	521.72412109375	2	521.324391	1040.63423	-0.51257	-0.00026721	-0.1591	-8.2945E-05	-0.67167	-0.00035016	521.3243334252934	73.527	0.4045	73.527	73.336	73.74	0					12	7	2	0	0	0	0.55359	1	26797	26797		10.824	2.0785	1	1513700	+		37332	16028	27319	27545	36360	36360					0.11553711122587629
NLIQKIKY	8	Unmodified	_NLIQKIKY_					0	0	0			REV__tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1	REV__tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	510.6341247558594	2	510.316035	1018.61752	-1.3986	-0.00071373	-0.15144	-7.7284E-05	-1.55	-0.00079101	510.3161954566947	37.07	0.30398	37.841	37.716	38.02	0.7709					7	5	2	0	0	0	0.8824	1	13574	13574		16.942	0	1	959680	+		37333	28649	27320	27546	36361	36361					0.10895210236662933
NLIRHLLLV	9	Unmodified	_NLIRHLLLV_					0	0	0		nc|ENSG00000163354|Q5T1A1-2|DCST2;ENSG00000163354|ENST00000368424|DCST2	nc|ENSG00000163354|Q5T1A1-2|DCST2	nc|ENSG00000163354|Q5T1A1-2|DCST2	MULTI-SECPEP	A375_MHC_IP_R1	1	546.18115234375	2	545.858401	1089.70225	-0.53621	-0.00029269	2.0362	0.0011115	1.5	0.00081879	545.859393945226	87.855	0.30499	87.855	87.644	87.949	0					6	5	2	0	0	0	0.80005	1	32172	32172		2.0598	0	1	1145000			37334	6652	27321	27547	36362	36362					0.16098580773268623
NLISERKTK	9	Unmodified	_NLISERKTK_					0	0	0		nc|ENSG00000001497|Q9Y4W2-4|LAS1L;nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-3|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	MULTI-SECPEP	A375_MHC_IP_R2	2	544.692626953125	2	544.824755	1087.63496	-0.76995	-0.00041949	0.49455	0.00026944	-0.2754	-0.00015004	544.8247890229621	132.04	1.016	132.23	131.9	132.92	0.18953					39	19	3	0	0	0	0.74412	1	51909	51909		6.2058	0	1	31691000			37335	845	27322	27548	36363	36363					0.09464505771643417
NLISKVGGSL	10	Unmodified	_NLISKVGGSL_					0	0	0		ENST00000578150.1_1_18:21594913-21660647:+|nuORF	ENST00000578150.1_1_18:21594913-21660647:+|nuORF	ENST00000578150.1_1_18:21594913-21660647:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	494.6946716308594	2	494.295299	986.576045	-0.4572	-0.00022599	0.27371	0.0001353	-0.18349	-9.0698E-05	494.295592007123	65.143	0.81477	65.143	64.75	65.565	0					41	15	4	0	0	0	0.62001	1	23640	23640		33.445	3.6043	1	2916500			37336	13652	27323	27549	36364	36364					0.08222029477337855
NLISWPNYI	9	Unmodified	_NLISWPNYI_					0	0	0			REV__tr|U7T5C5|U7T5C5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00520PE=4SV=1	REV__tr|U7T5C5|U7T5C5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00520PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	560.1812744140625	2	560.295299	1118.57605	-0.41411	-0.00023203	-0.065559	-3.6733E-05	-0.47967	-0.00026876	560.2954180699945	100.03	0.50841	100.79	100.57	101.08	0.76278					20	9	3	0	0	0	0.60917	1	37891	37891		19.257	2.3147	1	790640	+		37337	28823	27324	27550	36365	36365					0.021500294773204587
NLIYLKHTLE	10	Unmodified	_NLIYLKHTLE_					0	0	0		ENSG00000057468|ENST00000263187|MSH4	ENSG00000057468|ENST00000263187|MSH4	ENSG00000057468|ENST00000263187|MSH4	MULTI-SECPEP	A375_MHC_IP_R2	2	414.6009826660156	3	415.239684	1242.69722	-0.049908	-2.0724E-05	-3.1957	-0.001327	-3.2456	-0.0013477	415.2386600040265	27.9	0.3046	28.579	28.401	28.706	0.67857					11	5	3	0	0	0	0.94651	1	9628	9628		3.5871	0.26742	1	3074100			37338	1284	27325	27551	36366	36366					0.08558232119980858
NLKEEIFNL	9	Unmodified	_NLKEEIFNL_					0	0	0			REV__tr|U7T3X5|U7T3X5_FUSNUProbableGTP-bindingproteinEngBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=engBPE=3SV=1	REV__tr|U7T3X5|U7T3X5_FUSNUProbableGTP-bindingproteinEngBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=engBPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	559.810302734375	2	560.305864	1118.59717	-0.47994	-0.00026891	0.093507	5.2393E-05	-0.38643	-0.00021652	560.3058372912562	83.251	0.86216	83.251	82.924	83.786	0					48	16	4	0	0	0	0.0096967	1	30432	30432		99.755	17.226	1	32661000	+		37339	28790	27326	27552	36367	36367					0.04261994786179457
NLKEEIFNL	9	Unmodified	_NLKEEIFNL_					0	0	0			REV__tr|U7T3X5|U7T3X5_FUSNUProbableGTP-bindingproteinEngBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=engBPE=3SV=1	REV__tr|U7T3X5|U7T3X5_FUSNUProbableGTP-bindingproteinEngBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=engBPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	560.704345703125	2	560.305864	1118.59717	-0.47994	-0.00026891	0.093507	5.2393E-05	-0.38643	-0.00021652	560.3058372912562	83.251	0.86216	83.251	82.924	83.786	0					48	16	4	0	0	0	0.13199	1	30418	30418		66.457	0	1	32661000	+		37340	28790	27326	27552	36368	36368					0.04261994786179457
NLKEEIFNL	9	Unmodified	_NLKEEIFNL_					0	0	0			REV__tr|U7T3X5|U7T3X5_FUSNUProbableGTP-bindingproteinEngBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=engBPE=3SV=1	REV__tr|U7T3X5|U7T3X5_FUSNUProbableGTP-bindingproteinEngBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=engBPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	560.7059936523438	2	560.305864	1118.59717	-0.66567	-0.00037298	0.10767	6.0329E-05	-0.558	-0.00031265	560.3058288798171	82.429	0.8611	83.172	82.787	83.648	0.74293					52	16	5	0	0	0	0.040539	1	31254	31254		110.67	0	1	30884000	+		37341	28790	27326	27552	36369	36369					0.04261994786179457
NLKELADQF	9	Unmodified	_NLKELADQF_					0	0	0			REV__nc|ENSG00000244731|P0C0L4-2|C4A	REV__nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-SECPEP	A375_MHC_IP_R1	1	539.3671875	2	539.282389	1076.55022	-0.6394	-0.00034482	-0.43705	-0.00023569	-1.0765	-0.00058051	539.2821385202835	77.545	0.81372	77.545	77.184	77.998	0					18	15	2	0	0	0	0.49205	1	28282	28282		21.537	5.3879	1	1083500	+		37342	22709	27327	27553	36370	36370					0.01501135235048423
NLKINVAFLY	10	Unmodified	_NLKINVAFLY_					0	0	0			REV__ENSG00000137200|ENST00000373451|CMTR1	REV__ENSG00000137200|ENST00000373451|CMTR1	MULTI-SECPEP	A375_MHC_IP_R1	1	398.615478515625	3	398.900891	1193.68084	-0.27261	-0.00010874	-3.4357	-0.0013705	-3.7083	-0.0014792	398.8997218559108	24.723	0.20464	24.723	24.647	24.852	0					5	3	2	0	0	0	0.86849	1	7133	7133		16.566	9.4642	1	2160200	+		37343	18992	27328	27554	36371	36371					0.09175150953910816
NLKKSISPEPL	11	Unmodified	_NLKKSISPEPL_					0	0	0			REV__ENST00000520776.5_1_17:45405719-45473360:+|nuORF	REV__ENST00000520776.5_1_17:45405719-45473360:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	613.7598876953125	2	613.36117	1224.70779	-0.69215	-0.00042454	0.1579	9.6851E-05	-0.53424	-0.00032768	613.3610799052807	142.97	1.1093	142.97	142.38	143.49	0					65	21	5	0	0	0	0.73332	1	54747	54747		5.7319	2.7366	1	22275000	+		37344	21522	27329	27555	36372	36372					0.1044221477445717
NLKKSISPEPL	11	Unmodified	_NLKKSISPEPL_					0	0	0			REV__ENST00000520776.5_1_17:45405719-45473360:+|nuORF	REV__ENST00000520776.5_1_17:45405719-45473360:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	613.6047973632812	2	613.36117	1224.70779	-0.69215	-0.00042454	0.1579	9.6851E-05	-0.53424	-0.00032768	613.3610799052807	142.97	1.1093	142.97	142.38	143.49	0					65	21	5	0	0	0	0.99676	1	54811	54811		5.7319	4.0792	1	22275000	+		37345	21522	27329	27555	36373	36373					0.1044221477445717
NLKKSISPEPL	11	Unmodified	_NLKKSISPEPL_					0	0	0			REV__ENST00000520776.5_1_17:45405719-45473360:+|nuORF	REV__ENST00000520776.5_1_17:45405719-45473360:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	613.7607421875	2	613.36117	1224.70779	-0.37026	-0.0002271	-0.16572	-0.00010165	-0.53598	-0.00032875	613.3608820757509	142.99	0.96408	143.02	142.53	143.5	0.030731					55	18	4	0	0	0	0.72949	2	56002	55827;56002		9.3831	6.3879	1	22595000	+		37346	21522	27329	27555	36374;36375	36375					0.1044221477445717
NLKMLLKVVL	10	Unmodified	_NLKMLLKVVL_					0	0	0			REV__nc|ENSG00000001631|O00522-2|KRIT1	REV__nc|ENSG00000001631|O00522-2|KRIT1	MULTI-SECPEP	A375_MHC_IP_R2	2	1170.1614990234375	1	1170.76426	1169.75699	0.35421	0.0004147	-0.28238	-0.0003306	0.071834	8.41E-05	1170.764096967682	140.04	0.25864	140.1	139.95	140.21	0.059906					7	4	2	0	0	0	0.95034	1	54829	54829		0.40072	0	1	2039500	+		37347	16086	27330	27556	36376	36376					0.17889831529691946
NLKMTRVLW	9	Unmodified	_NLKMTRVLW_					0	0	0		ENST00000297423.8_1_8:48203675-48206584:+|nuORF	ENST00000297423.8_1_8:48203675-48206584:+|nuORF	ENST00000297423.8_1_8:48203675-48206584:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	580.2113037109375	2	580.834069	1159.65358	-0.1187	-6.8946E-05	-1.8778	-0.0010907	-1.9965	-0.0011597	581.3346191121033	70.953	0.20679	70.953	70.85	71.057	0					5	3	2	0	0	0	0.71071	1	25743	25743		20.454	7.9221	1	551840			37348	10515	27331	27557	36377	36377					0.08014344141861329
NLKNHIKDL	9	Unmodified	_NLKNHIKDL_					0	0	0		tr|U7T4G6|U7T4G6_FUSNURfaE,domainIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00333PE=4SV=1	tr|U7T4G6|U7T4G6_FUSNURfaE,domainIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00333PE=4SV=1	tr|U7T4G6|U7T4G6_FUSNURfaE,domainIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00333PE=4SV=1	MSMS	A375_MHC_IP_R1	1	547.8619384765625	2	547.819473	1093.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.962	1	84.962	84.462	85.462	0								0	0	0	0.15486	1	31131	31131		13.906	5.3128	1				37349	30000	27332	27558	36378	36378					0.0813252311722863
NLKNIRYW	8	Unmodified	_NLKNIRYW_					0	0	0		tr|U7STE7|U7STE7_FUSNUYhcGPDDEXKnucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01383PE=4SV=1	tr|U7STE7|U7STE7_FUSNUYhcGPDDEXKnucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01383PE=4SV=1	tr|U7STE7|U7STE7_FUSNUYhcGPDDEXKnucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01383PE=4SV=1	MSMS	A375_MHC_IP_R2	2	369.63702392578125	3	369.541697	1105.60326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.563	1	28.241	27.741	28.741	0.67857								0	0	0	0.16876	1	9431	9431		6.2058	1.3088	1				37350	29684	27333	27559	36379	36379					0.054685578083763176
NLKNQLIL	8	Unmodified	_NLKNQLIL_					0	0	0		nc|ENSG00000153956|P54289-4|CACNA2D1;nc|ENSG00000153956|P54289-5|CACNA2D1;nc|ENSG00000153956|P54289-3|CACNA2D1;ENSG00000153956|ENST00000356860|CACNA2D1;nc|ENSG00000153956|P54289|CACNA2D1;ENST00000466806.5_1_7:81634729-81641553:-|nuORF	nc|ENSG00000153956|P54289-4|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	MULTI-MSMS	A375_MHC_IP_R2	2	478.7000732421875	2	478.300384	954.586216	-0.53718	-0.00025693	0.24663	0.00011796	-0.29055	-0.00013897	478.3004730047005	102.33	2.1361	103.09	102.36	104.5	0.76428					85	41	4	0	0	0	0.6817	1	38653	38653		40.449	0	1	30577000			37351	6051	27334	27560	36380	36380					0.10710637202578255
NLKRPHVP	8	Unmodified	_NLKRPHVP_					0	0	0		ENST00000603624.1_1_9:138360069-138360393:-|nuORF	ENST00000603624.1_1_9:138360069-138360393:-|nuORF	ENST00000603624.1_1_9:138360069-138360393:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	481.1903991699219	2	480.790518	959.566484	-0.37478	-0.00018019	0.022214	1.068E-05	-0.35257	-0.00016951	480.7905367195162	143.74	0.74574	143.77	143.34	144.08	0.024414					20	14	2	0	0	0	0.972	1	56169	56169		0.79363	0	1	5113800			37352	13898	27335	27561	36381	36381					0.085083059824683
NLKRRRRQYYL	11	Unmodified	_NLKRRRRQYYL_					0	0	0			REV__nc|ENSG00000107897|Q5T8D3-4|ACBD5	REV__nc|ENSG00000107897|Q5T8D3-4|ACBD5	MSMS	A375_MHC_IP_R2	2	522.6900024414062	3	522.642697	1564.90626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.026	1	53.777	53.277	54.277	0.75105								0	0	0	0.16352	1	20004	20004		0.40827	0.041592	1		+		37353	17504	27336	27562	36382	36382					0.1464049319665719
NLKRYLLQYFK	11	Unmodified	_NLKRYLLQYFK_					0	0	0		ENST00000515387.1_1_5:96239260-96245469:+|nuORF;ENST00000513084.5_1_5:96237218-96245469:+|nuORF;nc|ENSG00000164308|Q6P179-3|ERAP2;ENSG00000164308|ENST00000437043|ERAP2	ENST00000515387.1_1_5:96239260-96245469:+|nuORF	ENST00000515387.1_1_5:96239260-96245469:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	496.3585205078125	3	495.9574	1484.85037	-0.62193	-0.00030845	1.7638	0.00087476	1.1418	0.00056631	495.95880064382055	131.81	0.35329	131.81	131.68	132.03	0					15	6	3	0	0	0	1.0014	1	50856	50856		0.45452	0.35968	1	3986100			37354	6822	27337	27563	36383	36383					0.12733847236449947
NLKTHLRLY	9	Unmodified	_NLKTHLRLY_					0	0	0		PRDM1|p.H653Y|1|0.18|ENSG00000057657|chr6:106106965-106106965|C/T|missense_variant	PRDM1|p.H653Y|1|0.18|ENSG00000057657|chr6:106106965-106106965|C/T|missense_variant	PRDM1|p.H653Y|1|0.18|ENSG00000057657|chr6:106106965-106106965|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	386.25628662109375	3	386.564502	1156.67168	0.086502	3.3439E-05	0.11729	4.5342E-05	0.2038	7.878E-05	386.5646098952061	32.325	0.30623	32.325	32.127	32.434	0					7	5	2	0	0	0	0.79966	1	10435	10435		6.1918	0.40842	1	1001900			37355	15221	27338	27564	36384	36384					0.09960802388241063
NLKVDQQLPGP	11	Unmodified	_NLKVDQQLPGP_					0	0	0			REV__ENSG00000160111|ENST00000443236|CPAMD8	REV__ENSG00000160111|ENST00000443236|CPAMD8	MULTI-MSMS	A375_MHC_IP_R1	1	605.3880004882812	2	604.83532	1207.65609	-0.30905	-0.00018693	0.31358	0.00018967	0.0045286	2.7391E-06	604.8355354120689	33.839	0.7603	33.839	33.393	34.154	0					37	14	3	0	0	0	0.72728	1	11028	11028		11.495	0.6952	1	17238000	+		37356	20146	27339	27565	36385	36385					0.060564710805238064
NLLANNEYY	9	Unmodified	_NLLANNEYY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R2	2	557.2207641601562	2	557.264196	1112.51384	-1.0971	-0.00061135	0.96398	0.00053719	-0.13307	-7.4158E-05	557.2647904620787	52.027	0.81364	52.779	52.321	53.134	0.75225					31	15	3	0	0	0	0.60101	2	19486	19482;19486		14.838	1.7958	1	5291800			37357	6151;14694	27340	27566	36386;36387	36387					-0.03791741661666492
NLLCKSPTL	9	Unmodified	_NLLCKSPTL_					0	0	0		ENSG00000131969|ENST00000337334|ABHD12B;nc|ENSG00000131969|Q7Z5M8-2|ABHD12B	ENSG00000131969|ENST00000337334|ABHD12B	ENSG00000131969|ENST00000337334|ABHD12B	MULTI-SECPEP	A375_MHC_IP_R2	2	495.4884948730469	2	494.778428	987.542302	-0.6843	-0.00033858	0.064023	3.1677E-05	-0.62028	-0.0003069	494.7786312180976	38.959	0.51048	39.734	39.556	40.067	0.77451					15	9	2	0	0	0	0.3213	1	14422	14422		37.974	0	1	2190500			37358	4362	27341	27567	36388	36388					0.0480328471392113
NLLDHSCHH	9	Unmodified	_NLLDHSCHH_					0	0	0			REV__ENST00000542038.5_1_12:21654733-21661326:+|nuORF	REV__ENST00000542038.5_1_12:21654733-21661326:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	537.68505859375	2	538.240532	1074.46651	-0.82213	-0.0004425	0.54643	0.00029411	-0.2757	-0.0001484	538.2408251878754	83.689	1.0199	84.429	83.797	84.817	0.73962					26	19	2	0	0	0	0.69507	1	31891	31891		13.906	5.9959	1	1374500	+		37359	25903	27342	27568	36389	36389					-0.06774299413632434
NLLDLLTEV	9	Unmodified	_NLLDLLTEV_					0	0	0		ENSG00000140553|ENST00000418476|UNC45A;nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENST00000556704.1_1_15:91486092-91490047:+|nuORF	ENSG00000140553|ENST00000418476|UNC45A;ENST00000556704.1_1_15:91486092-91490047:+|nuORF	ENSG00000140553|ENST00000418476|UNC45A	MULTI-MSMS	A375_MHC_IP_R1	1	515.69482421875	2	515.294965	1028.57538	-0.8399	-0.00043279	0.19137	9.8614E-05	-0.64852	-0.00033418	515.2950507895054	137.51	0.45967	137.51	137.33	137.79	0					21	8	4	0	0	0	0.0099819	1	52914	52914		122.18	22.424	1	23471000			37360	5168;13444	27343	27569	36390	36390					0.06223190037621862
NLLDLLTEV	9	Unmodified	_NLLDLLTEV_					0	0	0		ENSG00000140553|ENST00000418476|UNC45A;nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENST00000556704.1_1_15:91486092-91490047:+|nuORF	ENSG00000140553|ENST00000418476|UNC45A;ENST00000556704.1_1_15:91486092-91490047:+|nuORF	ENSG00000140553|ENST00000418476|UNC45A	MULTI-MSMS	A375_MHC_IP_R2	2	515.6949462890625	2	515.294965	1028.57538	-0.57349	-0.00029552	-0.12593	-6.489E-05	-0.69942	-0.00036041	515.294899849317	137.4	0.45807	137.48	137.3	137.76	0.083969					25	8	5	0	0	0	0.0015808	1	53928	53928		155.03	32.847	1	20625000			37361	5168;13444	27343	27569	36391	36391					0.06223190037621862
NLLDLTRKS	9	Unmodified	_NLLDLTRKS_					0	0	0			REV__ENSG00000151320|ENST00000280979|AKAP6	REV__ENSG00000151320|ENST00000280979|AKAP6	MULTI-SECPEP	A375_MHC_IP_R2	2	530.1714477539062	2	530.31148	1058.60841	-0.71171	-0.00037743	2.4458	0.001297	1.7341	0.00091961	530.3133145385461	81.109	0.45865	81.854	81.572	82.03	0.74474					14	8	2	0	0	0	0.35487	1	30845	30845		29.082	5.061	1	1501300	+		37362	19747	27344	27570	36392	36392					0.08144816880326289
NLLDNQIKVH	10	Unmodified	_NLLDNQIKVH_					0	0	0			REV__CYP17A1|p.R239Q|1|0.21|ENSG00000148795|chr10:102834073-102834073|C/T|missense_variant	REV__CYP17A1|p.R239Q|1|0.21|ENSG00000148795|chr10:102834073-102834073|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	399.30572509765625	3	398.559417	1192.65642	-0.39166	-0.0001561	0.54852	0.00021862	0.15686	6.2518E-05	398.5596920687176	27.962	0.45193	27.962	27.836	28.288	0					12	8	2	0	0	0	0.91909	1	8505	8505		1.4551	0.49284	1	2614500	+		37363	15947	27345	27571	36393	36393					0.06779890800362409
NLLDNQIKVH	10	Unmodified	_NLLDNQIKVH_					0	0	0			REV__CYP17A1|p.R239Q|1|0.21|ENSG00000148795|chr10:102834073-102834073|C/T|missense_variant	REV__CYP17A1|p.R239Q|1|0.21|ENSG00000148795|chr10:102834073-102834073|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	398.559417	1192.65642	-0.051391	-2.0482E-05	0.14582	5.8119E-05	0.094432	3.7637E-05	398.55947688072035	27.228	0.3572	27.907	27.741	28.098	0.67857	-0.027358	-0.00013675	NaN	1.4551	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2572900	+		37364	15947	27345	27571							0.06779890800362409
NLLDPPPEV	9	Unmodified	_NLLDPPPEV_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000484220.1_1_22:21119034-21147510:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	A375_MHC_IP_R1	1	497.69683837890625	2	497.266207	992.517862	-0.50895	-0.00025308	0.25106	0.00012484	-0.25789	-0.00012824	497.2662050615638	94.41	1.0658	94.41	93.84	94.905	0					45	20	3	0	0	0	0.012447	2	34713	34666;34713		93.166	30.593	1	2200900			37365	9791	27346	27572	36394;36395	36395					0.02130347832053303
NLLDPPPEV	9	Unmodified	_NLLDPPPEV_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000484220.1_1_22:21119034-21147510:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	A375_MHC_IP_R2	2	497.69732666015625	2	497.266207	992.517862	-0.34313	-0.00017063	-0.0085655	-4.2593E-06	-0.3517	-0.00017489	497.2661619694668	93.699	1.116	94.443	93.853	94.969	0.74473					36	21	2	0	0	0	0.16945	1	35729	35729		40.239	9.6027	1	2233800			37366	9791	27346	27572	36396	36396					0.02130347832053303
NLLEEVFHL	9	Unmodified	_NLLEEVFHL_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	A375_MHC_IP_R2	2	557.6997680664062	2	557.300581	1112.58661	-0.79086	-0.00044075	-0.60857	-0.00033915	-1.3994	-0.0007799	557.3001251984377	129.91	0.20219	130.12	130.05	130.25	0.2142					6	3	2	0	0	0	0.026461	1	51090	51090		77.984	27.129	1	5122200			37367	14737	27347	27573	36397	36397					0.03482012131780721
NLLEIAPHL	9	Unmodified	_NLLEIAPHL_					0	0	0		ENSG00000115159|ENST00000438166|GPD2;nc|ENSG00000115159|P43304-2|GPD2	ENSG00000115159|ENST00000438166|GPD2	ENSG00000115159|ENST00000438166|GPD2	MULTI-MSMS	A375_MHC_IP_R1	1	510.69793701171875	2	510.297842	1018.58113	-0.38765	-0.00019782	-0.81781	-0.00041733	-1.2055	-0.00061514	510.29742873127526	102.14	0.4556	102.14	101.9	102.35	0					14	8	2	0	0	0	0.042197	1	37532	37532		67.344	29.37	1	1673600			37368	3275	27348	27574	36398	36398					0.07258333339939327
NLLEIAPHL	9	Unmodified	_NLLEIAPHL_					0	0	0		ENSG00000115159|ENST00000438166|GPD2;nc|ENSG00000115159|P43304-2|GPD2	ENSG00000115159|ENST00000438166|GPD2	ENSG00000115159|ENST00000438166|GPD2	MULTI-SECPEP	A375_MHC_IP_R2	2	510.69757080078125	2	510.297842	1018.58113	-0.63702	-0.00032507	-0.37849	-0.00019314	-1.0155	-0.00051821	510.29761784269965	101.26	0.45715	102.03	101.75	102.21	0.76428					19	8	3	0	0	0	0.43707	1	38384	38384		28.487	21.764	1	2623500			37369	3275	27348	27574	36399	36399					0.07258333339939327
NLLFFRYQHSR	11	Unmodified	_NLLFFRYQHSR_					0	0	0		Tigger16a_dup1470|chr15:48144722-48144890:-|3.5084548021972086|0.1060375097122897|5.05|459.0|8|3|sense	Tigger16a_dup1470|chr15:48144722-48144890:-|3.5084548021972086|0.1060375097122897|5.05|459.0|8|3|sense	Tigger16a_dup1470|chr15:48144722-48144890:-|3.5084548021972086|0.1060375097122897|5.05|459.0|8|3|sense	MSMS	A375_MHC_IP_R1	1	740.8904418945312	2	740.894035	1479.77352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.612	1	94.612	94.112	95.112	0								0	0	0	0.16203	1	34776	34776		8.1555	2.4237	1				37370	29345	27349	27575	36400	36400					0.05282048739968559
NLLHWHCY	8	Unmodified	_NLLHWHCY_					0	0	0		ENST00000358015.7_1_9:110093006-110093297:+|nuORF	ENST00000358015.7_1_9:110093006-110093297:+|nuORF	ENST00000358015.7_1_9:110093006-110093297:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	543.7261962890625	2	543.252911	1084.49127	-0.6518	-0.00035409	0.96917	0.0005265	0.31738	0.00017242	543.2537001724714	94.25	1.0666	94.25	93.584	94.651	0					42	20	3	0	0	0	0.77123	2	34471	34471;34559		14.582	2.0501	1	2133000			37371	10990	27350	27576	36401;36402	36401					-0.047596195402775265
NLLIKLFV	8	Unmodified	_NLLIKLFV_					0	0	0			REV__tr|U7T4H8|U7T4H8_FUSNUSpermidine/putrescinetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00343PE=3SV=1	REV__tr|U7T4H8|U7T4H8_FUSNUSpermidine/putrescinetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00343PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	479.6767578125	2	480.318046	958.621539	-0.40305	-0.00019359	0.14159	6.801E-05	-0.26146	-0.00012558	480.31789222206174	116.54	0.30705	117.2	116.97	117.28	0.65962					8	5	2	0	0	0	0.95423	1	44046	44046		12.532	0	1	7940900	+		37372	28800	27351	27577	36403	36403					0.14057299730382056
NLLIYTLRN	9	Unmodified	_NLLIYTLRN_					0	0	0		OR2C3|p.P288L|1|0.44|ENSG00000196242|chr1:247531649-247531649|G/A|missense_variant;OR13A1|p.P305L|1|0.25|ENSG00000256574|chr10:45303509-45303509|G/A|missense_variant	OR2C3|p.P288L|1|0.44|ENSG00000196242|chr1:247531649-247531649|G/A|missense_variant	OR2C3|p.P288L|1|0.44|ENSG00000196242|chr1:247531649-247531649|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	373.943603515625	3	373.888874	1118.64479	0.42107	0.00015743	-0.58665	-0.00021934	-0.16559	-6.1911E-05	373.8885771073234	28.516	0.15154	28.516	28.44	28.592	0					4	2	2	0	0	0	0.75164	1	8819	8819		6.1918	2.8722	1	1344800			37373	15060	27352	27578	36404	36404					0.09021693777026485
NLLKPLPA	8	Unmodified	_NLLKPLPA_					0	0	0		SCRIB|p.S165P|1|0.09|ENSG00000180900|chr8:143813480-143813480|A/G|missense_variant	SCRIB|p.S165P|1|0.09|ENSG00000180900|chr8:143813480-143813480|A/G|missense_variant	SCRIB|p.S165P|1|0.09|ENSG00000180900|chr8:143813480-143813480|A/G|missense_variant	MSMS	A375_MHC_IP_R1	1	433.28521728515625	2	433.278921	864.543289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.32	1	144.32	143.82	144.82	0								0	0	0	0.16876	1	55350	55350		0.79363	0	1				37374	29121	27353	27579	36405	36405					0.10559867145127555
NLLPKLHIV	9	Unmodified	_NLLPKLHIV_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4	ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	A375_MHC_IP_R1	1	524.4877319335938	2	523.839677	1045.6648	-0.34708	-0.00018181	0.081575	4.2732E-05	-0.2655	-0.00013908	523.8397174944183	79.035	2.3417	79.035	78.606	80.948	0					128	45	5	0	0	0	0.0090669	1	28919	28919		100.37	55.964	1	202670000			37375	9580;7410	27354	27580	36406	36406					0.14379489507655308
NLLPKLHIV	9	Unmodified	_NLLPKLHIV_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4	ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4	ENSG00000213719|ENST00000375784|CLIC1	MULTI-SECPEP	A375_MHC_IP_R2	2	524.2393798828125	2	523.839677	1045.6648	-0.52175	-0.00027331	-0.21121	-0.00011064	-0.73296	-0.00038395	523.8395644923562	77.959	1.9321	78.702	78.315	80.247	0.74293					112	37	5	0	0	0	0.014271	1	29530	29530		112.59	49.03	1	193130000			37376	9580;7410	27354	27580	36407	36407					0.14379489507655308
NLLPKLHIV	9	Unmodified	_NLLPKLHIV_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4	ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4	ENSG00000213719|ENST00000375784|CLIC1	MULTI-SECPEP	A375_MHC_IP_R2	2	1047.0712890625	1	1046.67208	1045.6648	0.059281	6.2047E-05	-1.2538	-0.0013123	-1.1945	-0.0012503	1046.6703744668666	77.976	0.30677	78.719	78.52	78.827	0.74293					8	5	2	0	0	0	0.053904	1	29634	29634		85.272	44.823	1	1773100			37377	9580;7410	27354	27580	36408	36408					0.14379489507655308
NLLPKLHIV	9	Unmodified	_NLLPKLHIV_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4	ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MATCH	A375_MHC_IP_R1	1		1	1046.67208	1045.6648	0.30629	0.00032058	-0.020219	-2.1163E-05	0.28607	0.00029942	1046.6721451423666	79.086	0.35423	79.086	78.807	79.161	0	0.18334	0.00053564	NaN	85.272	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1522400			37378	9580;7410	27354	27580							0.14379489507655308
NLLQQQIQV	9	Unmodified	_NLLQQQIQV_					0	0	0		nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000110693|P35712-4|SOX6;nc|ENSG00000110693|P35712-2|SOX6;nc|ENSG00000110693|P35712-3|SOX6;ENSG00000110693|ENST00000683767|SOX6	nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000110693|P35712-4|SOX6	nc|ENSG00000134532|P35711-2|SOX5	MULTI-SECPEP	A375_MHC_IP_R1	1	542.7109375	2	542.31148	1082.60841	-0.76412	-0.00041439	0.0026733	1.4498E-06	-0.76145	-0.00041294	542.3116065507106	90.291	0.65952	90.291	89.931	90.59	0					23	12	3	0	0	0	0.064992	1	33171	33171		78.149	10.069	1	2796000			37379	4585;2938	27355	27581	36409	36409					0.07040816880316925
NLLQQQIQV	9	Unmodified	_NLLQQQIQV_					0	0	0		nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000110693|P35712-4|SOX6;nc|ENSG00000110693|P35712-2|SOX6;nc|ENSG00000110693|P35712-3|SOX6;ENSG00000110693|ENST00000683767|SOX6	nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000110693|P35712-4|SOX6	nc|ENSG00000134532|P35711-2|SOX5	MULTI-SECPEP	A375_MHC_IP_R2	2	542.7109985351562	2	542.31148	1082.60841	-0.74207	-0.00040243	-0.26913	-0.00014595	-1.0112	-0.00054839	542.3112809241846	89.519	0.65891	90.251	89.886	90.545	0.7318					19	12	2	0	0	0	0.3213	1	34070	34070		46.021	0	1	3123800			37380	4585;2938	27355	27581	36410	36410					0.07040816880316925
NLLQTSSH	8	Unmodified	_NLLQTSSH_					0	0	0			REV__ENST00000562866.1_1_16:89783858-89784437:+|nuORF	REV__ENST00000562866.1_1_16:89783858-89784437:+|nuORF	MSMS	A375_MHC_IP_R2	2	450.1588134765625	2	450.232699	898.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.109	1	48.87	48.37	49.37	0.76128								0	0	0	0.16876	1	18059	18059		37.974	3.8716	1		+		37381	26196	27356	27582	36411	36411					-0.002442626590436703
NLLRRPQTAL	10	Unmodified	_NLLRRPQTAL_					0	0	0			REV__ENSG00000162607|ENST00000339950|USP1	REV__ENSG00000162607|ENST00000339950|USP1	MSMS	A375_MHC_IP_R2	2	591.7581176757812	2	591.359296	1180.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.37	1	142.4	141.9	142.9	0.030731								0	0	0	0.15541	1	55657	55657		3.2813	1.2216	1		+		37382	20273	27357	27583	36412	36412					0.12091589791248225
NLLTHIENV	9	Unmodified	_NLLTHIENV_					0	0	0		ENSG00000129292|ENST00000395386|PHF20L1;ENST00000477051.1_1_8:133854703-133858165:+|nuORF	ENSG00000129292|ENST00000395386|PHF20L1	ENSG00000129292|ENST00000395386|PHF20L1	MULTI-SECPEP	A375_MHC_IP_R1	1	527.18994140625	2	526.790381	1051.56621	-0.5007	-0.00026376	-0.50194	-0.00026442	-1.0026	-0.00052818	526.7904144864409	73.87	0.91147	73.87	73.285	74.197	0					40	17	5	0	0	0	0.011004	1	26877	26877		143.91	68.148	1	12757000			37383	4184	27358	27584	36413	36413					0.04248841471940068
NLLTHIENV	9	Unmodified	_NLLTHIENV_					0	0	0		ENSG00000129292|ENST00000395386|PHF20L1;ENST00000477051.1_1_8:133854703-133858165:+|nuORF	ENSG00000129292|ENST00000395386|PHF20L1	ENSG00000129292|ENST00000395386|PHF20L1	MULTI-SECPEP	A375_MHC_IP_R2	2	527.189697265625	2	526.790381	1051.56621	-0.47998	-0.00025285	-0.34362	-0.00018101	-0.8236	-0.00043386	526.7902857306891	72.982	0.8645	73.718	73.379	74.243	0.7354					43	16	4	0	0	0	0.011004	1	27663	27663		143.91	97.888	1	11905000			37384	4184	27358	27584	36414	36414					0.04248841471940068
NLLTLIPS	8	Unmodified	_NLLTLIPS_					0	0	0			REV__ENSG00000162430|ENST00000361547|SELENON	REV__ENSG00000162430|ENST00000361547|SELENON	MULTI-SECPEP	A375_MHC_IP_R1	1	436.2835693359375	2	435.768386	869.522219	0.34176	0.00014893	1.392	0.00060657	1.7337	0.0007555	435.76883092648944	69.573	0.20309	69.573	69.478	69.681	0					5	3	2	0	0	0	0.972	1	25226	25226		5.2307	0	1	560370	+		37385	20253	27359	27585	36415	36415					0.08223857045629757
NLLTMYTGGI	10	Unmodified	_NLLTMYTGGI_					0	0	0			REV__ENSG00000169359|ENST00000643144|SLC33A1	REV__ENSG00000169359|ENST00000643144|SLC33A1	MSMS	A375_MHC_IP_R1	1	541.8193359375	2	541.781167	1081.54778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.287	1	84.287	83.787	84.787	0								0	0	0	0.13504	1	30867	30867		32.305	3.8186	1		+		37386	20927	27360	27586	36416	36416					0.01026963505751155
NLLVETWKPS	10	Unmodified	_NLLVETWKPS_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MSMS	A375_MHC_IP_R2	2	593.7452392578125	2	593.826963	1185.63937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.42	1	101.18	100.68	101.68	0.76278								0	0	0	0.15121	1	38076	38076		22.658	2.2436	1		+		37387	17289	27361	27587	36417	36417					0.053979701945763736
NLMFIHKI	8	Unmodified	_NLMFIHKI_					0	0	0		tr|U7SL05|U7SL05_FUSNUHXXEEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02020PE=4SV=1	tr|U7SL05|U7SL05_FUSNUHXXEEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02020PE=4SV=1	tr|U7SL05|U7SL05_FUSNUHXXEEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02020PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	508.167724609375	2	508.291505	1014.56846	-0.61767	-0.00031395	-4.1095	-0.0020888	-4.7272	-0.0024028	508.28779647623924	86.251	0.20409	86.251	86.121	86.325	0					5	3	2	0	0	0	0.92636	1	31613	31613		11.64	6.8843	1	515540			37388	29490	27362	27588	36418	36418					0.06175598676065874
NLMLWQNF	8	Unmodified	_NLMLWQNF_					0	0	0		ENST00000298910.11_1_12:40704380-40704428:+|nuORF	ENST00000298910.11_1_12:40704380-40704428:+|nuORF	ENST00000298910.11_1_12:40704380-40704428:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1813354492188	2	533.262945	1064.51134	-1.0291	-0.00054879	1.7334	0.00092434	0.70425	0.00037555	533.2642421722546	67.791	0.45452	67.791	67.5	67.955	0					14	8	3	0	0	0	0.97144	1	24536	24536		5.2307	2.2354	1	521090			37389	10525	27363	27589	36419	36419					-0.018338686003289695
NLMLWQNF	8	Unmodified	_NLMLWQNF_					0	0	0		ENST00000298910.11_1_12:40704380-40704428:+|nuORF	ENST00000298910.11_1_12:40704380-40704428:+|nuORF	ENST00000298910.11_1_12:40704380-40704428:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	533.262945	1064.51134	-0.79194	-0.00042231	0.47909	0.00025548	-0.31285	-0.00016683	533.2638138176484	67.024	0.40513	67.76	67.546	67.951	0.73631	-0.01552	-0.00071611	NaN	5.2307	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	931620			37390	10525	27363	27589							-0.018338686003289695
NLMTLSFFF	9	Unmodified	_NLMTLSFFF_					0	0	0			REV__PIGV|p.S223F|1|0.52|ENSG00000060642|chr1:26794702-26794702|C/T|missense_variant	REV__PIGV|p.S223F|1|0.52|ENSG00000060642|chr1:26794702-26794702|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	560.2119140625	2	560.280803	1118.54705	-0.58079	-0.00032541	0.36484	0.00020441	-0.21596	-0.000121	560.2809579265128	28.295	1.0102	28.295	27.684	28.694	0					29	19	2	0	0	0	0.60917	1	8817	8817		19.257	2.6911	1	9837700	+		37391	27778	27364	27590	36420	36420					-0.007478311433033014
NLMVISTCGY	10	Unmodified	_NLMVISTCGY_					0	0	0			REV__nc|ENSG00000060656|Q92729-4|PTPRU	REV__nc|ENSG00000060656|Q92729-4|PTPRU	MULTI-MSMS	A375_MHC_IP_R2	2	550.68603515625	2	550.759378	1099.5042	-0.70465	-0.00038809	-0.0074339	-4.0943E-06	-0.71208	-0.00039219	550.7594598091963	67.877	1.169	68.612	68.154	69.323	0.73512					48	22	3	0	0	0	0.69306	1	25600	25600		13.906	0.86358	1	4141100	+		37392	27108	27365	27591	36421	36421					-0.0415696926304463
NLNELLELD	9	Unmodified	_NLNELLELD_					0	0	0			REV__ENSG00000178125|ENST00000685739|PPP1R42	REV__ENSG00000178125|ENST00000685739|PPP1R42	MULTI-MSMS	A375_MHC_IP_R2	2	536.767578125	2	536.779679	1071.5448	-0.78459	-0.00042115	1.3164	0.00070663	0.53184	0.00028548	536.7803737771263	46.187	0.30315	46.952	46.855	47.159	0.76519					9	5	2	0	0	0	0.14922	1	17267	17267		41.84	3.6641	1	1429300	+		37393	21488	27366	27592	36422	36422					0.011894116525809295
NLNELLELD	9	Unmodified	_NLNELLELD_					0	0	0			REV__ENSG00000178125|ENST00000685739|PPP1R42	REV__ENSG00000178125|ENST00000685739|PPP1R42	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	536.779679	1071.5448	-0.78459	-0.00042115	1.3164	0.00070663	0.53184	0.00028548	536.7803737771263	46.187	0.30315	46.952	46.855	47.159	0.76519	-0.097869	2.6267E-05	NaN	41.84	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1429300	+		37394	21488	27366	27592							0.011894116525809295
NLNFYKKA	8	Unmodified	_NLNFYKKA_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	A375_MHC_IP_R1	1	499.65496826171875	2	499.276909	996.539266	-0.56915	-0.00028416	-1.7817	-0.00088957	-2.3509	-0.0011737	499.2760315951669	19.293	0.18188	19.293	19.238	19.42	0					5	3	2	0	0	0	0.77603	1	4713	4713		9.3474	1.4373	1	3733900	+		37395	19347	27367	27593	36423	36423					0.04085777651414446
NLNIHPSCK	9	Unmodified	_NLNIHPSCK_					0	0	0		ENST00000441493.6_1_22:18271402-18271729:-|nuORF	ENST00000441493.6_1_22:18271402-18271729:-|nuORF	ENST00000441493.6_1_22:18271402-18271729:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	513.1506958007812	2	513.263476	1024.5124	-0.65831	-0.00033788	-1.6152	-0.000829	-2.2735	-0.0011669	513.2620081020975	87.435	0.65679	88.167	87.761	88.418	0.7318					16	12	2	0	0	0	0.20645	1	33347	33347		39.95	19.496	1	837900			37396	11983	27368	27594	36424	36424					0.0011234576857077627
NLNKNVLLY	9	Unmodified	_NLNKNVLLY_					0	0	0			REV__HHIPL1|p.P159L|1|0.12|ENSG00000182218|chr14:99652444-99652444|C/T|missense_variant	REV__HHIPL1|p.P159L|1|0.12|ENSG00000182218|chr14:99652444-99652444|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	546.0175170898438	2	545.816399	1089.61824	-0.41795	-0.00022813	1.0868	0.00059317	0.6688	0.00036504	545.816822947074	93.36	0.56109	93.36	93.023	93.584	0					13	10	2	0	0	0	0.71541	1	34236	34236		16.942	1.0951	1	832910	+		37397	21678	27369	27595	36425	36425					0.07702004885732094
NLNLLKVSV	9	Unmodified	_NLNLLKVSV_					0	0	0			REV__TRIO|p.P2677L|1|0.06|ENSG00000038382|chr5:14497857-14497857|C/T|missense_variant	REV__TRIO|p.P2677L|1|0.06|ENSG00000038382|chr5:14497857-14497857|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	500.4745788574219	2	500.313492	998.612431	-0.40922	-0.00020474	-0.57476	-0.00028756	-0.98398	-0.0004923	500.3131934350597	93.818	0.6071	94.563	94.362	94.969	0.74473					15	11	2	0	0	0	0.4261	1	35655	35655		30.637	0.79596	1	1643000	+		37398	28906	27370	27596	36426	36426					0.11306906374045411
NLNYDYTL	8	Unmodified	_NLNYDYTL_					0	0	0		tr|U7T6M6|U7T6M6_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00299PE=3SV=1	tr|U7T6M6|U7T6M6_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00299PE=3SV=1	tr|U7T6M6|U7T6M6_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00299PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	508.6802673339844	2	508.24019	1014.46583	-0.27817	-0.00014138	-1.4334	-0.00072853	-1.7116	-0.00086991	508.74054136441777	51.904	0.56115	51.904	51.575	52.136	0					15	10	2	0	0	0	0.77603	1	18314	18314		9.3474	0	1	1395400			37399	30050	27371	27597	36427	36427					-0.0408281558170529
NLNYDYTL	8	Unmodified	_NLNYDYTL_					0	0	0		tr|U7T6M6|U7T6M6_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00299PE=3SV=1	tr|U7T6M6|U7T6M6_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00299PE=3SV=1	tr|U7T6M6|U7T6M6_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00299PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	508.7112731933594	2	508.24019	1014.46583	-0.44364	-0.00022547	-0.15782	-8.0211E-05	-0.60146	-0.00030569	508.2400824058764	61.05	0.71277	61.05	60.77	61.483	0					20	13	2	0	0	0	0.77123	1	21929	21929		14.582	0.67564	1	2934800			37400	30050	27371	27597	36428	36428					-0.0408281558170529
NLNYYIVWCWR	11	Unmodified	_NLNYYIVWCWR_					0	0	0			REV__ENST00000535011.6_1_7:128410370-128410973:+|nuORF	REV__ENST00000535011.6_1_7:128410370-128410973:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	766.2724609375	2	765.371546	1528.72854	-0.94037	-0.00071973	-0.60682	-0.00046444	-1.5472	-0.0011842	765.3709482966631	31.518	0.35706	32.237	32.026	32.383	0.71857					17	6	4	0	0	0	0.73378	1	11139	11139		5.2969	2.3016	1	9345800	+		37401	25897	27372	27598	36429	36429					-0.014675181175789476
NLPDEIYHV	9	Unmodified	_NLPDEIYHV_					0	0	0		ENSG00000148335|ENST00000372483|NTMT1	ENSG00000148335|ENST00000372483|NTMT1	ENSG00000148335|ENST00000372483|NTMT1	MULTI-SECPEP	A375_MHC_IP_R1	1	550.6746215820312	2	550.274564	1098.53457	-0.38009	-0.00020915	0.068787	3.7852E-05	-0.3113	-0.0001713	550.2746320243466	72.301	1.1645	72.301	71.968	73.132	0					51	22	3	0	0	0	0.62767	1	26264	26264		23.148	14.403	1	14861000			37402	5733	27373	27599	36430	36430					-0.010751512820206699
NLPDEIYHV	9	Unmodified	_NLPDEIYHV_					0	0	0		ENSG00000148335|ENST00000372483|NTMT1	ENSG00000148335|ENST00000372483|NTMT1	ENSG00000148335|ENST00000372483|NTMT1	MULTI-MSMS	A375_MHC_IP_R2	2	550.6558227539062	2	550.274564	1098.53457	-1.0821	-0.00059547	1.0798	0.00059416	-0.0023697	-1.304E-06	550.2748882663366	71.635	1.5207	72.369	71.806	73.327	0.73421					71	29	4	0	0	0	0.46038	1	27262	27262		21.747	6.9084	1	18578000			37403	5733	27373	27599	36431	36431					-0.010751512820206699
NLPDPQYGF	9	Unmodified	_NLPDPQYGF_					0	0	0			REV__ENSG00000243749|ENST00000373337|TMEM35B	REV__ENSG00000243749|ENST00000373337|TMEM35B	MULTI-MSMS	A375_MHC_IP_R1	1	526.1767578125	2	525.748182	1049.48181	-0.52123	-0.00027403	-0.093949	-4.9393E-05	-0.61518	-0.00032343	525.7480824249108	40.158	0.66254	40.158	39.896	40.559	0					22	12	2	0	0	0	0.2487	1	13901	13901		34.402	2.0962	1	12949000	+		37404	22813	27374	27600	36432	36432					-0.04095109344825687
NLPDPQYGF	9	Unmodified	_NLPDPQYGF_					0	0	0			REV__ENSG00000243749|ENST00000373337|TMEM35B	REV__ENSG00000243749|ENST00000373337|TMEM35B	MULTI-MSMS	A375_MHC_IP_R2	2	526.1765747070312	2	525.748182	1049.48181	-0.52903	-0.00027814	-0.23125	-0.00012158	-0.76028	-0.00039972	525.7480027786701	39.427	0.6105	40.202	39.914	40.524	0.77451					27	11	3	0	0	0	0.091096	1	14648	14648		52.268	0	1	20122000	+		37405	22813	27374	27600	36433	36433					-0.04095109344825687
NLPEIPRNI	9	Unmodified	_NLPEIPRNI_					0	0	0		nc|ENSG00000242498|Q7Z6K5-2|ARPIN;ENSG00000177879|ENST00000316788|AP3S1;ENSG00000157823|ENST00000336418|AP3S2	nc|ENSG00000242498|Q7Z6K5-2|ARPIN	nc|ENSG00000242498|Q7Z6K5-2|ARPIN	MULTI-MSMS	A375_MHC_IP_R1	1	533.7050170898438	2	533.306198	1064.59784	-0.49373	-0.00026331	-0.82343	-0.00043914	-1.3172	-0.00070245	533.305582490236	72.316	0.81183	72.316	72.018	72.83	0					26	15	2	0	0	0	0.68046	1	26300	26300		8.7454	1.1365	1	3795800			37406	14915	27375	27601	36434	36434					0.06812834225888764
NLPEIPRNI	9	Unmodified	_NLPEIPRNI_					0	0	0		nc|ENSG00000242498|Q7Z6K5-2|ARPIN;ENSG00000177879|ENST00000316788|AP3S1;ENSG00000157823|ENST00000336418|AP3S2	nc|ENSG00000242498|Q7Z6K5-2|ARPIN	nc|ENSG00000242498|Q7Z6K5-2|ARPIN	MULTI-SECPEP	A375_MHC_IP_R2	2	533.7054443359375	2	533.306198	1064.59784	-1.0377	-0.0005534	-0.53873	-0.00028731	-1.5764	-0.00084071	533.3057572229048	71.659	0.80946	72.393	72.061	72.871	0.73421					27	15	2	0	0	0	0.74169	1	27144	27144		16.149	10.417	1	6160500			37407	14915	27375	27601	36435	36435					0.06812834225888764
NLPLNEKNFLK	11	Unmodified	_NLPLNEKNFLK_					0	0	0		ENST00000359139.7_1_22:50781822-50810543:+|nuORF	ENST00000359139.7_1_22:50781822-50810543:+|nuORF	ENST00000359139.7_1_22:50781822-50810543:+|nuORF	MSMS	A375_MHC_IP_R1	1	665.276123046875	2	665.379894	1328.74524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.38	1	134.38	133.88	134.88	0								0	0	0	0.16265	1	51821	51821		4.897	0	1				37408	11009	27376	27602	36436	36436					0.09401306040035706
NLPPDLVNV	9	Unmodified	_NLPPDLVNV_					0	0	0		ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	MULTI-SECPEP	A375_MHC_IP_R2	2	490.1555480957031	2	490.7742	979.533846	-0.64417	-0.00031614	0.042175	2.0698E-05	-0.60199	-0.00029544	490.7740737172219	97.648	1.3241	98.404	97.923	99.248	0.75586					29	25	2	0	0	0	0.65527	1	36984	36984		22.736	10.205	1	695360			37409	1872	27377	27603	36437	36437					0.04326054068951635
NLPQLPHFR	9	Unmodified	_NLPQLPHFR_					0	0	0		ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1;ENST00000470353.1_1_10:5967388-5971349:+|nuORF;ENST00000479433.5_1_10:5967388-5970349:+|nuORF	ENSG00000134452|ENST00000362091|FBH1	ENSG00000134452|ENST00000362091|FBH1	MULTI-SECPEP	A375_MHC_IP_R1	1	374.62567138671875	3	374.545331	1120.61416	0.30183	0.00011305	0.21309	7.9811E-05	0.51491	0.00019286	374.5454101859616	34.199	0.35237	34.199	34.001	34.353	0					10	6	2	0	0	0	0.76827	1	11171	11171		7.1017	0	1	2694600			37410	4577	27378	27604	36438	36438					0.05867960182672505
NLPVLPYV	8	Unmodified	_NLPVLPYV_					0	0	0		nc|ENSG00000114378|Q12794-3|HYAL1;nc|ENSG00000114378|Q12794-2|HYAL1;ENSG00000114378|ENST00000395144|HYAL1;nc|ENSG00000114378|Q12794-5|HYAL1;nc|ENSG00000114378|Q12794-7|HYAL1	nc|ENSG00000114378|Q12794-3|HYAL1	nc|ENSG00000114378|Q12794-3|HYAL1	MULTI-MSMS	A375_MHC_IP_R1	1	914.9340209960938	1	914.534581	913.527304	-0.46775	-0.00042777	-0.20731	-0.00018959	-0.67506	-0.00061737	914.5342559147264	143.56	0.1861	143.56	143.45	143.63	0					7	3	3	0	0	0	0.77717	1	55083	55083		5.2307	0	1	1606300			37411	3215	27379	27605	36439	36439					0.06708160908226546
NLPYKLEIVD	10	Unmodified	_NLPYKLEIVD_					0	0	0			REV__PTPN11|p.G407Wfs*39|1|0.27|ENSG00000179295|chr12:112482197-112482198|-/T|frameshift_variant	REV__PTPN11|p.G407Wfs*39|1|0.27|ENSG00000179295|chr12:112482197-112482198|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	401.5916748046875	3	401.892173	1202.65469	-0.33928	-0.00013635	-2.9815	-0.0011982	-3.3207	-0.0013346	401.89068024185855	31.405	0.71055	31.405	31.059	31.769	0					24	11	3	0	0	0	0.92832	1	10118	10118		5.4027	0	1	2767500	+		37412	21553	27380	27606	36440	36440					0.06146836991752025
NLQEKVPEL	9	Unmodified	_NLQEKVPEL_					0	0	0		ENSG00000186889|ENST00000335390|TMEM17	ENSG00000186889|ENST00000335390|TMEM17	ENSG00000186889|ENST00000335390|TMEM17	MULTI-SECPEP	A375_MHC_IP_R1	1	535.69775390625	2	535.298039	1068.58152	-0.63774	-0.00034138	1.4639	0.00078362	0.82615	0.00044223	535.2980830531202	57.02	0.56018	57.02	56.804	57.364	0					22	10	3	0	0	0	0.23894	1	20457	20457		40.239	11.158	1	2004000			37413	8788	27381	27607	36441	36441					0.04997708269161194
NLQEKVPEL	9	Unmodified	_NLQEKVPEL_					0	0	0		ENSG00000186889|ENST00000335390|TMEM17	ENSG00000186889|ENST00000335390|TMEM17	ENSG00000186889|ENST00000335390|TMEM17	MULTI-SECPEP	A375_MHC_IP_R2	2	535.6978149414062	2	535.298039	1068.58152	-1.1022	-0.00059	0.72858	0.00039001	-0.37361	-0.00019999	535.2976812881848	56.199	0.71536	56.949	56.591	57.306	0.75015					27	13	3	0	0	0	0.54812	1	21277	21277		24.991	21.394	1	2594700			37414	8788	27381	27607	36442	36442					0.04997708269161194
NLQKNSQEV	9	Unmodified	_NLQKNSQEV_					0	0	0		AGXT2|p.E405K|2|0.48|ENSG00000113492|chr5:35010125-35010125|C/T|missense_variant	AGXT2|p.E405K|2|0.48|ENSG00000113492|chr5:35010125-35010125|C/T|missense_variant	AGXT2|p.E405K|2|0.48|ENSG00000113492|chr5:35010125-35010125|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	530.201171875	2	530.275095	1058.53564	-0.58642	-0.00031097	0.3312	0.00017563	-0.25522	-0.00013534	530.2752522856277	37.741	0.61363	37.741	37.454	38.067	0					21	11	3	0	0	0	0.6656	1	12640	12640		10.074	0.72649	1	5907300			37415	86	27382	27608	36443	36443					0.008710630869245506
NLQLPPLS	8	Unmodified	_NLQLPPLS_					0	0	0		ENSG00000184588|ENST00000341517|PDE4B	ENSG00000184588|ENST00000341517|PDE4B	ENSG00000184588|ENST00000341517|PDE4B	MULTI-MSMS	A375_MHC_IP_R1	1	441.68194580078125	2	441.258185	880.501818	-0.042891	-1.8926E-05	-0.20488	-9.0407E-05	-0.24778	-0.00010933	441.25805302549685	72.86	1.5211	72.86	72.474	73.995	0					78	29	4	0	0	0	0.73946	1	26786	26786		23.148	0	1	41449000			37416	8596	27383	27609	36444	36444					0.05678686385817855
NLQLPPPPHTQ	11	Unmodified	_NLQLPPPPHTQ_					0	0	0		ENST00000592670.5_1_17:40908265-40911852:-|nuORF	ENST00000592670.5_1_17:40908265-40911852:-|nuORF	ENST00000592670.5_1_17:40908265-40911852:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	414.93621826171875	3	414.559417	1240.65642	0.19891	8.2461E-05	-0.054494	-2.2591E-05	0.14442	5.987E-05	414.55934353562577	19.497	0.4072	19.497	19.368	19.776	0					18	7	4	0	0	0	0.72773	1	4886	4886		11.065	0.16632	1	10723000			37417	13816	27384	27610	36445	36445					0.04571890800366418
NLQLQPGNAKL	11	Unmodified	_NLQLQPGNAKL_					0	0	0		nc|ENSG00000116171|P22307-4|SCP2;nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;nc|ENSG00000116171|P22307-6|SCP2;nc|ENSG00000116171|P22307-2|SCP2;ENST00000488965.1_1_1:53516256-53516373:+|nuORF	nc|ENSG00000116171|P22307-4|SCP2	nc|ENSG00000116171|P22307-4|SCP2	MULTI-SECPEP	A375_MHC_IP_R1	1	398.6196594238281	3	399.2313	1194.67207	-0.447	-0.00017846	0.18215	7.2718E-05	-0.26486	-0.00010574	399.2313212054902	32.578	0.35132	32.578	32.383	32.734	0					10	6	2	0	0	0	0.99681	1	10465	10465		2.4348	0.97967	1	1106100			37418	3379	27385	27611	36446	36446					0.08252177317422138
NLQNQLEKY	9	Unmodified	_NLQNQLEKY_					0	0	0			REV__nc|ENSG00000174844|Q6ZR08|DNAH12	REV__nc|ENSG00000174844|Q6ZR08|DNAH12	MULTI-MSMS	A375_MHC_IP_R2	2	576.1961059570312	2	575.29857	1148.58259	-0.42371	-0.00024376	-2.641	-0.0015194	-3.0648	-0.0017631	575.7976613824331	40.9	0.712	41.675	41.234	41.946	0.77451					32	13	3	0	0	0	0.35581	1	15112	15112		26.884	2.8631	1	13903000	+		37419	27370	27386	27612	36447	36447					0.014239226380595937
NLQPLSIAN	9	Unmodified	_NLQPLSIAN_					0	0	0			REV__ENSG00000128283|ENST00000249014|CDC42EP1	REV__ENSG00000128283|ENST00000249014|CDC42EP1	MSMS	A375_MHC_IP_R2	2	485.1919250488281	2	485.271824	968.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.691	1	49.448	48.948	49.948	0.75737								0	0	0	0.050211	1	18285	18285		53.833	4.2785	1		+		37420	18446	27387	27613	36448	36448					0.04357169926197457
NLQPSNNQ	8	Unmodified	_NLQPSNNQ_					0	0	0			REV__ENSG00000186952|ENST00000455884|TMEM232	REV__ENSG00000186952|ENST00000455884|TMEM232	MULTI-MSMS	A375_MHC_IP_R1	1	458.1195068359375	2	457.719956	913.425358	-0.21504	-9.8428E-05	0.25547	0.00011693	0.04043	1.8506E-05	457.71985532487804	34.9	0.81229	34.9	34.456	35.269	0					22	15	2	0	0	0	0.76654	1	11598	11598		15.847	0	1	5018100	+		37421	21999	27388	27614	36449	36449					-0.034817371814710896
NLQPTGQLEY	10	Unmodified	_NLQPTGQLEY_					0	0	0		nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-8|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3;ENSG00000160584|ENST00000445177|SIK3	nc|ENSG00000160584|Q9Y2K2-7|SIK3	nc|ENSG00000160584|Q9Y2K2-7|SIK3	MSMS	A375_MHC_IP_R1	1	581.7006225585938	2	581.790578	1161.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.342	1	38.342	37.842	38.842	0								0	0	0	0.15089	1	12998	12998		16.149	3.1066	1				37422	6425	27389	27615	36450	36450					-0.007717835988614752
NLQSLSLRISN	11	Unmodified	_NLQSLSLRISN_					0	0	0			REV__ENST00000511153.5_3_4:16004971-16040619:-|nuORF	REV__ENST00000511153.5_3_4:16004971-16040619:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	414.955322265625	3	415.570093	1243.68845	-0.25644	-0.00010657	2.9966	0.0012453	2.7402	0.0011387	415.57108688561544	26.798	0.25653	27.457	27.363	27.62	0.65992					7	4	2	0	0	0	0.9574	1	9110	9110		5.5233	0	1	1118400	+		37423	16149	27390	27616	36451	36451					0.07635258483537655
NLQTMVDTLQ	10	Unmodified	_NLQTMVDTLQ_					0	0	0		ENSG00000169991|ENST00000455833|IFFO2	ENSG00000169991|ENST00000455833|IFFO2	ENSG00000169991|ENST00000455833|IFFO2	MULTI-MSMS	A375_MHC_IP_R2	2	581.7589111328125	2	581.792263	1161.56997	-0.16451	-9.5712E-05	-0.0058623	-3.4107E-06	-0.17037	-9.9122E-05	581.7917009694572	47.2	0.56076	47.961	47.664	48.225	0.76127					22	10	3	0	0	0	0.38709	1	17642	17642		34.932	3.6637	1	3679500			37424	7461	27391	27617	36452	36452					-0.004348568164914468
NLRAVGWN	8	Unmodified	_NLRAVGWN_					0	0	0		ENST00000493228.1_1_10:72643709-72647885:-|nuORF;ENSG00000166228|ENST00000299299|PCBD1;ENST00000493961.5_1_10:72642146-72645644:-|nuORF	ENST00000493228.1_1_10:72643709-72647885:-|nuORF	ENST00000493228.1_1_10:72643709-72647885:-|nuORF	MSMS	A375_MHC_IP_R1	1	465.1820983886719	2	465.251226	928.487899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.366	1	42.366	41.866	42.866	0								0	0	0	0.16876	1	14680	14680		24.674	2.9272	1				37425	7045	27392	27618	36453	36453					0.02079453677379206
NLRDVANP	8	Unmodified	_NLRDVANP_					0	0	0			REV__nc|ENSG00000104067|Q07157-2|TJP1	REV__nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	A375_MHC_IP_R1	1	450.1405944824219	2	449.740691	897.466829	0.22344	0.00010049	-0.047157	-2.1208E-05	0.17628	7.928E-05	449.74045945410245	48.339	0.70865	48.339	48.122	48.831	0					23	13	3	0	0	0	0.42086	1	17057	17057		52.268	3.9225	1	4368000	+		37426	17301	27393	27619	36454	36454					0.013994435778499792
NLRIVVDYK	9	Unmodified	_NLRIVVDYK_					0	0	0			REV__nc|ENSG00000110080|Q11206-7|ST3GAL4	REV__nc|ENSG00000110080|Q11206-7|ST3GAL4	MULTI-MSMS	A375_MHC_IP_R1	1	560.763916015625	2	560.329673	1118.64479	-0.84102	-0.00047125	0.25518	0.00014299	-0.58583	-0.00032826	560.3297007787207	142.9	0.45428	142.9	142.59	143.04	0					15	8	2	0	0	0	0.72985	1	54879	54879		4.3292	0.38484	1	667840	+		37427	17616	27394	27620	36455	36455					0.09021693777026485
NLRKICKYV	9	Unmodified	_NLRKICKYV_					0	0	0			REV__WEE2|p.D234N|1|0.52|ENSG00000214102|chr7:141719186-141719186|G/A|missense_variant	REV__WEE2|p.D234N|1|0.52|ENSG00000214102|chr7:141719186-141719186|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	568.21875	2	568.834069	1135.65358	-0.39406	-0.00022415	1.1622	0.00066112	0.76817	0.00043696	568.8346098710851	129.13	0.90953	129.37	128.91	129.82	0.23946					44	17	3	0	0	0	0.80005	1	50838	50838		0.52476	0	1	15317000	+		37428	28996	27395	27621	36456	36456					0.09118344141870693
NLRLCSSNL	9	Unmodified	_NLRLCSSNL_					0	0	0		ENST00000550951.5_1_12:50136245-50136326:+|nuORF	ENST00000550951.5_1_12:50136245-50136326:+|nuORF	ENST00000550951.5_1_12:50136245-50136326:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	510.1272277832031	2	510.268758	1018.52296	-0.47864	-0.00024423	0.19307	9.8519E-05	-0.28556	-0.00014571	510.2693470139921	58.203	0.60805	58.203	57.771	58.379	0					17	11	2	0	0	0	0.39388	1	20957	20957		32.305	1.6689	1	3078900			37429	13376	27396	27622	36457	36457					0.014443284230196696
NLRLFIGRPRW	11	Unmodified	_NLRLFIGRPRW_					0	0	0		NOX4|p.S517L|1|0.86|ENSG00000086991|chr11:89335911-89335911|G/A|missense_variant	NOX4|p.S517L|1|0.86|ENSG00000086991|chr11:89335911-89335911|G/A|missense_variant	NOX4|p.S517L|1|0.86|ENSG00000086991|chr11:89335911-89335911|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	477.0167236328125	3	476.6176	1426.83097	-0.34311	-0.00016353	-3.1015	-0.0014782	-3.4446	-0.0016417	476.61643185292075	143.12	0.91451	143.15	142.48	143.39	0.030731					30	17	3	0	0	0	0.73807	1	55945	55945		1.2148	0.70888	1	1278000			37430	15017	27397	27623	36458	36458					0.13462935736197323
NLRQKRLDE	9	Unmodified	_NLRQKRLDE_					0	0	0			REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF	REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	586.6983032226562	2	586.330736	1170.64692	-0.36187	-0.00021218	2.2432	0.0013153	1.8814	0.0011031	586.3339942359797	100.6	0.20435	101.37	101.24	101.44	0.76278					5	3	2	0	0	0	0.6656	1	38146	38146		10.074	1.9184	1	316120	+		37431	17805	27398	27624	36459	36459					0.06842122514831317
NLRSRRLTWKL	11	Unmodified	_NLRSRRLTWKL_					0	0	0		ENST00000265827.7_1_7:127014698-127014806:-|nuORF	ENST00000265827.7_1_7:127014698-127014806:-|nuORF	ENST00000265827.7_1_7:127014698-127014806:-|nuORF	MSMS	A375_MHC_IP_R2	2	481.67657470703125	3	481.628276	1441.863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.236	1	99.996	99.496	100.5	0.75977								0	0	0	0.16305	1	37645	37645		2.8433	0.21205	1				37432	10349	27399	27625	36460	36460					0.1597430341935251
NLRVIKLILL	10	Unmodified	_NLRVIKLILL_					0	0	0		nc|ENSG00000145808|Q8TE59|ADAMTS19;ENSG00000145808|ENST00000274487|ADAMTS19	nc|ENSG00000145808|Q8TE59|ADAMTS19	nc|ENSG00000145808|Q8TE59|ADAMTS19	MSMS	A375_MHC_IP_R1	1	598.0467529296875	2	597.918458	1193.82236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.34	1	113.34	112.84	113.84	0								0	0	0	0.15591	1	41545	41545		1.6526	0	1				37433	5583	27400	27626	36461	36461					0.23320569047041317
NLRWLNEG	8	Unmodified	_NLRWLNEG_					0	0	0		ENST00000258436.9_1_2:103334818-103334878:-|nuORF	ENST00000258436.9_1_2:103334818-103334878:-|nuORF	ENST00000258436.9_1_2:103334818-103334878:-|nuORF	MSMS	A375_MHC_IP_R1	1	501.184326171875	2	501.261791	1000.50903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.06	1	110.06	109.56	110.56	0								0	0	0	0.16876	1	40361	40361		16.942	1.0951	1				37434	10257	27401	27627	36462	36462					0.008794189862328494
NLRWRCPF	8	Unmodified	_NLRWRCPF_					0	0	0			REV__ENST00000537350.5_2_1:167674023-167674290:+|nuORF	REV__ENST00000537350.5_2_1:167674023-167674290:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	546.677001953125	2	546.282003	1090.54945	-0.81892	-0.00044736	0.72823	0.00039782	-0.090693	-4.9544E-05	546.7825960844177	96.272	0.30495	97.023	96.906	97.211	0.75045					6	5	2	0	0	0	0.95423	1	36558	36558		12.532	8.9351	1	721610	+		37435	25923	27402	27628	36463	36463					0.007800621050137124
NLRWRRRFVWL	11	Unmodified	_NLRWRRRFVWL_					0	0	0			REV__nc|ENSG00000169783|Q96FE5-2|LINGO1	REV__nc|ENSG00000169783|Q96FE5-2|LINGO1	MSMS	A375_MHC_IP_R2	2	801.0177612304688	2	801.468035	1600.92152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.52	1	131.7	131.2	132.2	0.18953								0	0	0	0.16358	1	51734	51734		0.30703	0.03801	1		+		37436	20943	27403	27629	36464	36464					0.14509404784485014
NLSCFLLCML	10	Unmodified	_NLSCFLLCML_					0	0	0		ENST00000394607.7_1_4:111026722-111119460:-|nuORF	ENST00000394607.7_1_4:111026722-111119460:-|nuORF	ENST00000394607.7_1_4:111026722-111119460:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	578.7111206054688	2	578.781798	1155.54904	-0.062611	-3.6238E-05	-0.42053	-0.0002434	-0.48314	-0.00027963	578.7816187297321	54.488	0.35394	54.488	54.213	54.567	0					11	6	2	0	0	0	0.63639	1	19364	19364		18.146	1.0335	1	1558600			37437	11453	27404	27630	36465	36465					-0.022508617213588877
NLSCFLLCML	10	Unmodified	_NLSCFLLCML_					0	0	0		ENST00000394607.7_1_4:111026722-111119460:-|nuORF	ENST00000394607.7_1_4:111026722-111119460:-|nuORF	ENST00000394607.7_1_4:111026722-111119460:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	578.781798	1155.54904	-0.70432	-0.00040765	-0.47952	-0.00027754	-1.1838	-0.00068518	578.7815421706051	53.729	0.3077	54.48	54.249	54.557	0.75105	-0.003909	-4.7172E-05	NaN	18.146	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1699400			37438	11453	27404	27630							-0.022508617213588877
NLSDARIFI	9	Unmodified	_NLSDARIFI_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A	ENSG00000134910|ENST00000392708|STT3A	ENSG00000134910|ENST00000392708|STT3A	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6890258789062	2	524.792924	1047.57129	-0.4976	-0.00026114	0.80951	0.00042482	0.3119	0.00016369	524.7933929333858	89.483	0.40469	89.483	89.375	89.78	0					11	7	2	0	0	0	0.75164	1	32904	32904		9.3831	0	1	1409500			37439	4626	27405	27631	36466	36466					0.049411453345555856
NLSEGVLSV	9	Unmodified	_NLSEGVLSV_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;EXT2|p.D431Afs*5|1|0.05|ENSG00000151348|chr11:44171729-44171729|A/-|frameshift_variant;ENST00000531161.5_1_11:44146432-44228372:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	A375_MHC_IP_R1	1	917.8946533203125	1	917.493838	916.486562	-0.036726	-3.3696E-05	-0.27771	-0.0002548	-0.31443	-0.00028849	917.4938459021366	88.25	0.5611	88.25	88	88.561	0					15	10	2	0	0	0	0.0061124	1	32380	32380		133.05	47.411	1	3511600			37440	5898	27406	27632	36467	36467					0.02497774797961938
NLSEGVLSV	9	Unmodified	_NLSEGVLSV_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;EXT2|p.D431Afs*5|1|0.05|ENSG00000151348|chr11:44171729-44171729|A/-|frameshift_variant;ENST00000531161.5_1_11:44146432-44228372:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MATCH	A375_MHC_IP_R2	2		1	917.493838	916.486562	-0.24499	-0.00022478	-0.29638	-0.00027193	-0.54138	-0.00049671	917.4935012706678	87.497	0.40228	88.229	88.016	88.418	0.7318	-0.010598	-1.1868E-05	NaN	133.05	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3267500			37441	5898	27406	27632							0.02497774797961938
NLSETLPRS	9	Unmodified	_NLSETLPRS_					0	0	0			REV__ENST00000282344.10_1_13:27641698-27641779:-|nuORF	REV__ENST00000282344.10_1_13:27641698-27641779:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	508.68060302734375	2	508.772188	1015.52982	-0.3243	-0.00016499	0.072006	3.6635E-05	-0.25229	-0.00012836	508.772131709635	53.687	0.55973	53.687	53.403	53.962	0					29	10	4	0	0	0	0.67332	1	19039	19039		9.3831	0.63772	1	4251200	+		37442	23324	27407	27633	36468	36468					0.02267964575253245
NLSIDPFSGD	10	Unmodified	_NLSIDPFSGD_					0	0	0		PON2|p.S275F|1|0.26|ENSG00000105854|chr7:95406201-95406201|G/A|missense_variant	PON2|p.S275F|1|0.26|ENSG00000105854|chr7:95406201-95406201|G/A|missense_variant	PON2|p.S275F|1|0.26|ENSG00000105854|chr7:95406201-95406201|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1480102539062	2	532.748379	1063.4822	-0.47873	-0.00025504	-0.26188	-0.00013951	-0.7406	-0.00039456	532.7481605085987	111.28	0.61494	111.28	111	111.62	0					13	11	2	0	0	0	0.91909	1	40824	40824		13.906	13.906	1	1669800			37443	15209	27408	27634	36469	36469					-0.046997344155897736
NLSIDPFSGD	10	Unmodified	_NLSIDPFSGD_					0	0	0		PON2|p.S275F|1|0.26|ENSG00000105854|chr7:95406201-95406201|G/A|missense_variant	PON2|p.S275F|1|0.26|ENSG00000105854|chr7:95406201-95406201|G/A|missense_variant	PON2|p.S275F|1|0.26|ENSG00000105854|chr7:95406201-95406201|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	532.748379	1063.4822	-0.55033	-0.00029319	0.12098	6.4449E-05	-0.42936	-0.00022874	532.7483298799913	110.53	0.51034	111.27	110.99	111.5	0.73692	-0.0081301	0.00027855	NaN	13.906	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1370100			37444	15209	27408	27634							-0.046997344155897736
NLSMSSHPF	9	Unmodified	_NLSMSSHPF_					0	0	0		ENST00000480553.1_1_21:47959692-47966956:+|nuORF	ENST00000480553.1_1_21:47959692-47966956:+|nuORF	ENST00000480553.1_1_21:47959692-47966956:+|nuORF	MSMS	A375_MHC_IP_R1	1	510.2289733886719	2	510.234384	1018.45422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.349	1	49.349	48.849	49.849	0								0	0	0	0.1535	1	17450	17450		15.847	3.3156	1				37445	12501	27409	27635	36470	36470					-0.05427335876674988
NLSNPAKKFK	10	Unmodified	_NLSNPAKKFK_					0	0	0		ENSG00000117360|ENST00000324862|PRPF3;PRPF3|p.R549Q|1|0.73|ENSG00000117360|chr1:150346023-150346023|G/A|missense_variant;ENST00000467329.5_1_1:150316853-150325452:+|nuORF	ENSG00000117360|ENST00000324862|PRPF3	ENSG00000117360|ENST00000324862|PRPF3	MULTI-MSMS	A375_MHC_IP_R1	1	383.9188537597656	3	382.892507	1145.65569	0.70967	0.00027173	-0.46772	-0.00017909	0.24195	9.264E-05	382.8922725559315	38.859	0.6605	38.859	38.628	39.289	0					25	12	4	0	0	0	0.70312	1	13298	13298		10.899	4.2686	1	11315000			37446	3475	27410	27636	36471	36471					0.08869096151329359
NLSNVWTVEY	10	Unmodified	_NLSNVWTVEY_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-SECPEP	A375_MHC_IP_R1	1	612.7025146484375	2	612.798403	1223.58225	-0.39343	-0.00024109	0.5703	0.00034948	0.17687	0.00010838	612.7987327130082	58.381	0.50782	58.381	58.177	58.685	0					12	9	2	0	0	0	0.91909	1	21065	21065		13.906	9.009	1	1422200			37447	14846;9178	27411	27637	36472	36472					-0.020594970817910507
NLSQLAAAV	9	Unmodified	_NLSQLAAAV_					0	0	0		nc|ENSG00000113763|Q6ZN44-3|UNC5A;ENSG00000113763|ENST00000329542|UNC5A	nc|ENSG00000113763|Q6ZN44-3|UNC5A	nc|ENSG00000113763|Q6ZN44-3|UNC5A	MULTI-SECPEP	A375_MHC_IP_R1	1	444.1529846191406	2	443.753267	885.491981	-0.39377	-0.00017474	0.2071	9.1903E-05	-0.18666	-8.2833E-05	443.75336841182644	30.643	0.35358	30.643	30.453	30.806	0					11	6	3	0	0	0	0.059859	1	9758	9758		81.89	0	1	2391800			37448	3183	27412	27638	36473	36473					0.04465498380432109
NLSQRVVSY	9	Unmodified	_NLSQRVVSY_					0	0	0		DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant;ENSG00000150990|ENST00000308736|DHX37	DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant	DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	533.6875610351562	2	533.288005	1064.56146	-0.66296	-0.00035355	0.39151	0.00020879	-0.27145	-0.00014476	533.2880315339052	40.279	0.66367	40.279	39.845	40.509	0					24	12	3	0	0	0	0.14438	1	13813	13813		67.081	21.381	1	8427500			37449	741	27413	27639	36474	36474					0.03175957329199264
NLSQRVVSY	9	Unmodified	_NLSQRVVSY_					0	0	0		DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant;ENSG00000150990|ENST00000308736|DHX37	DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant	DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	533.6874389648438	2	533.288005	1064.56146	-0.78893	-0.00042073	0.63012	0.00033603	-0.15881	-8.4693E-05	533.2880085400717	39.47	0.50813	40.245	40.016	40.524	0.77451					23	9	3	0	0	0	0.13199	1	14577	14577		61.09	9.6747	1	9380700			37450	741	27413	27639	36475	36475					0.03175957329199264
NLSTPMLFLDQ	11	Unmodified	_NLSTPMLFLDQ_					0	0	0			REV__ENST00000367166.4_1_6:155619688-155632440:-|nuORF	REV__ENST00000367166.4_1_6:155619688-155632440:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	639.1972045898438	2	639.823563	1277.63257	-0.31724	-0.00020298	-0.017836	-1.1412E-05	-0.33507	-0.00021439	639.823489858611	44.468	0.56366	44.468	44.113	44.676	0					13	10	2	0	0	0	0.9754	1	15440	15440		4.897	0	1	1886300	+		37451	23961	27414	27640	36476	36476					0.004862892516712236
NLSVKPKQPV	10	Unmodified	_NLSVKPKQPV_					0	0	0			REV__ENSG00000179639|ENST00000693622|FCER1A	REV__ENSG00000179639|ENST00000693622|FCER1A	MULTI-SECPEP	A375_MHC_IP_R1	1	555.708251953125	2	555.337498	1108.66044	-0.45975	-0.00025532	-0.92134	-0.00051166	-1.3811	-0.00076698	555.3363998653217	79.242	0.35703	79.242	79.061	79.418	0					8	6	2	0	0	0	0.88918	1	28931	28931		8.7454	0	1	941840	+		37452	21574	27415	27641	36477	36477					0.11045980294102264
NLSYSDIKL	9	Unmodified	_NLSYSDIKL_					0	0	0			REV__IMPG1|p.E671K|1|0.6|ENSG00000112706|chr6:75947347-75947347|C/T|missense_variant	REV__IMPG1|p.E671K|1|0.6|ENSG00000112706|chr6:75947347-75947347|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	526.6771240234375	2	526.784764	1051.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.388	1	93.127	92.627	93.627	0.73902								0	0	0	0.15411	1	35136	35136		14.838	0.93222	1		+		37453	26791	27416	27642	36478	36478					0.03126019377805278
NLTDRQVKIWF	11	Unmodified	_NLTDRQVKIWF_					0	0	0		ENST00000514415.1_1_12:54380145-54383227:+|nuORF;ENST00000511575.1_1_12:54379937-54383227:+|nuORF;ENST00000243082.4_1_12:54367506-54369194:+|nuORF;ENSG00000123388|ENST00000546378|HOXC11;ENSG00000005073|ENST00000006015|HOXA11;ENSG00000128713|ENST00000249504|HOXD11;ENSG00000128710|ENST00000249501|HOXD10;ENSG00000180818|ENST00000303460|HOXC10	ENST00000514415.1_1_12:54380145-54383227:+|nuORF	ENST00000514415.1_1_12:54380145-54383227:+|nuORF	MSMS	A375_MHC_IP_R2	2	710.3260498046875	2	710.390793	1418.76703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.04	1	143.07	142.57	143.57	0.030731								0	0	0	0.16297	1	55911	55911		3.2813	0	1				37454	881	27417	27643	36479	36479					0.07440110788616039
NLTENLQY	8	Unmodified	_NLTENLQY_					0	0	0		ENSG00000182378|ENST00000381657|PLCXD1	ENSG00000182378|ENST00000381657|PLCXD1	ENSG00000182378|ENST00000381657|PLCXD1	MSMS	A375_MHC_IP_R2	2	497.6629333496094	2	497.745639	993.476725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.215	1	41.99	41.49	42.49	0.77451								0	0	0	0.16876	1	15285	15285		21.747	4.6338	1				37455	8404	27418	27644	36480	36480					-0.02027413207429163
NLTETPETEI	10	Unmodified	_NLTETPETEI_					0	0	0		CON__REFSEQ:XP_001252647;CON__A2I7N3	CON__REFSEQ:XP_001252647	CON__REFSEQ:XP_001252647	MULTI-SECPEP	A375_MHC_IP_R1	1	574.1798095703125	2	573.779876	1145.5452	-0.20743	-0.00011902	0.56372	0.00032345	0.35629	0.00020443	573.7801877601075	57.492	0.56045	57.492	57.159	57.72	0					19	10	2	0	0	0	0.87043	1	20639	20639		15.248	6.5031	1	4004800		+	37456	566	27419	27645	36481	36481					-0.02175213418217936
NLTEVVPQL	9	Unmodified	_NLTEVVPQL_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-MSMS	A375_MHC_IP_R1	1	507.1874084472656	2	506.787307	1011.56006	-0.2581	-0.0001308	0.29065	0.0001473	0.032551	1.6496E-05	506.78740423927167	105.66	0.71041	105.66	105.3	106.01	0					20	13	2	0	0	0	0.0098183	1	38819	38819		114.65	42.727	1	2114600			37457	3109	27420	27646	36482	36482					0.05474323240423473
NLTEVVPQL	9	Unmodified	_NLTEVVPQL_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-MSMS	A375_MHC_IP_R2	2	507.1867980957031	2	506.787307	1011.56006	-0.67477	-0.00034197	0.21042	0.00010664	-0.46435	-0.00023533	506.78734827969134	104.81	0.91462	105.57	105.26	106.17	0.76308					23	17	2	0	0	0	0.0099679	1	39680	39680		121.53	45.773	1	2860400			37458	3109	27420	27646	36483	36483					0.05474323240423473
NLTIFFDV	8	Unmodified	_NLTIFFDV_					0	0	0		ENSG00000006007|ENST00000353258|GDE1	ENSG00000006007|ENST00000353258|GDE1	ENSG00000006007|ENST00000353258|GDE1	MSMS	A375_MHC_IP_R2	2	484.681640625	2	484.758018	967.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.892	1	48.654	48.154	49.154	0.76128								0	0	0	0.16876	1	17972	17972		28.487	12.64	1				37459	905	27421	27647	36484	36484					0.016432666659511597
NLTNTKQNCMP	11	Unmodified	_NLTNTKQNCMP_					0	0	0		nc|ENSG00000143624|Q68E01-3|INTS3	nc|ENSG00000143624|Q68E01-3|INTS3	nc|ENSG00000143624|Q68E01-3|INTS3	MULTI-SECPEP	A375_MHC_IP_R1	1	421.6228332519531	3	421.865524	1262.57474	-0.039749	-1.6769E-05	-0.77709	-0.00032783	-0.81684	-0.0003446	422.19813553661396	19.801	0.20358	19.801	19.725	19.928	0					5	3	2	0	0	0	0.99625	1	4980	4980		7.4771	4.7419	1	524570			37460	14653	27422	27648	36485	36485					-0.046042959453870935
NLTRLCRWDKR	11	Unmodified	_NLTRLCRWDKR_					0	0	0		ENSG00000154143|ENST00000284288|PANX3	ENSG00000154143|ENST00000284288|PANX3	ENSG00000154143|ENST00000284288|PANX3	MSMS	A375_MHC_IP_R1	1	730.8401489257812	2	730.898794	1459.78304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.9	1	101.9	101.4	102.4	0								0	0	0	0.16273	1	37446	37446		4.5289	0.93237	1				37461	6063	27423	27649	36486	36486					0.07153493753821749
NLTRRREWRHI	11	Unmodified	_NLTRRREWRHI_					0	0	0			REV__nc|ENSG00000100599|Q8TB24-4|RIN3	REV__nc|ENSG00000100599|Q8TB24-4|RIN3	MULTI-SECPEP	A375_MHC_IP_R1	1	513.6965942382812	3	512.958797	1535.85456	-0.039545	-2.0285E-05	0.74891	0.00038416	0.70937	0.00036388	512.9592068889026	69.783	0.45441	69.783	69.529	69.983	0					11	8	2	0	0	0	1.0005	1	25396	25396		1.1098	1.1098	1	1494700	+		37462	17108	27424	27650	36487	36487					0.10806749502739876
NLTSRYEVP	9	Unmodified	_NLTSRYEVP_					0	0	0		ENSG00000068745|ENST00000328631|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	MULTI-SECPEP	A375_MHC_IP_R1	1	539.718017578125	2	539.780013	1077.54547	-0.64931	-0.00035048	-1.1518	-0.00062169	-1.8011	-0.00097218	539.780025535562	75.537	1.7662	75.537	74.604	76.37	0					75	34	4	0	0	0	0.73008	1	27702	27702		8.1555	0	1	25683000			37463	1464	27425	27651	36488	36488					0.009802510922781948
NLTTDNANI	9	Unmodified	_NLTTDNANI_					0	0	0		ENSG00000186395|ENST00000269576|KRT10;CON__P13645	ENSG00000186395|ENST00000269576|KRT10	ENSG00000186395|ENST00000269576|KRT10	MULTI-SECPEP	A375_MHC_IP_R1	1	487.69488525390625	2	488.240721	974.466889	-0.28443	-0.00013887	-0.70823	-0.00034579	-0.99266	-0.00048466	488.24033437495973	99.554	1.7703	99.554	99.117	100.89	0					81	34	4	0	0	0	0.47368	1	36509	36509		26.884	0	1	37531000		+	37464	596	27426	27652	36489	36489					-0.021366012128055445
NLTTDNANI	9	Unmodified	_NLTTDNANI_					0	0	0		ENSG00000186395|ENST00000269576|KRT10;CON__P13645	ENSG00000186395|ENST00000269576|KRT10	ENSG00000186395|ENST00000269576|KRT10	MULTI-SECPEP	A375_MHC_IP_R2	2	487.61376953125	2	488.240721	974.466889	-0.45701	-0.00022313	-0.43961	-0.00021464	-0.89662	-0.00043777	488.24048264142294	98.825	1.7773	99.585	99.201	100.98	0.75977					85	34	4	0	0	0	0.58271	1	37468	37468		26.884	20.678	1	40834000		+	37465	596	27426	27652	36490	36490					-0.021366012128055445
NLVCLRLRLQR	11	Unmodified	_NLVCLRLRLQR_					0	0	0			REV__nc|ENSG00000124126|Q8TCU6-3|PREX1	REV__nc|ENSG00000124126|Q8TCU6-3|PREX1	MULTI-MSMS	A375_MHC_IP_R1	1	693.4698486328125	2	692.421905	1382.82926	-0.97259	-0.00067344	0.85119	0.00058938	-0.12141	-8.4065E-05	692.4222581081843	142.81	0.40552	142.81	142.54	142.94	0					13	7	3	0	0	0	0.73886	1	54788	54788		1.3295	0.13619	1	559060	+		37466	18272	27427	27653	36491	36491					0.15315558655947825
NLVHRKRR	8	Unmodified	_NLVHRKRR_					0	0	0			REV__ENST00000449895.5_1_1:8489907-8490030:+|nuORF	REV__ENST00000449895.5_1_1:8489907-8490030:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	540.2381591796875	2	539.838865	1077.66318	-1.0023	-0.00054107	-0.21203	-0.00011446	-1.2143	-0.00065553	539.8387468895671	147.37	0.22214	147.37	147.3	147.52	0					37	23	2	0	0	0	0.77842	1	56320	56320		0.69038	0.69038	1	204550	+		37467	24832	27428	27654	36492	36492					0.12745293262264568
NLVILEDQRK	10	Unmodified	_NLVILEDQRK_					0	0	0			REV__nc|ENSG00000171385|Q9UK17-2|KCND3	REV__nc|ENSG00000171385|Q9UK17-2|KCND3	MULTI-SECPEP	A375_MHC_IP_R1	1	614.7863159179688	2	614.356419	1226.69829	-0.69398	-0.00042635	-0.10115	-6.2142E-05	-0.79513	-0.00048849	614.3561925730725	149.42	1.6439	149.42	148.36	150	0					122	55	3	0	0	0	0.95024	1	56899	56899		0.40072	0.40072	1	329580	+		37468	21062	27429	27655	36493	36493					0.09400446488893976
NLVKELRPRDL	11	Unmodified	_NLVKELRPRDL_					0	0	0		ENSG00000100084|ENST00000263208|HIRA;ENST00000509549.5_1_22:19341546-19435194:-|nuORF	ENSG00000100084|ENST00000263208|HIRA	ENSG00000100084|ENST00000263208|HIRA	MSMS	A375_MHC_IP_R1	1	676.910888671875	2	676.904068	1351.79358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.25	1	100.25	99.747	100.75	0								0	0	0	0.16307	1	36844	36844		2.7352	0.23671	1				37469	2113	27430	27656	36494	36494					0.13175799679947886
NLVKGPRSS	9	Unmodified	_NLVKGPRSS_					0	0	0		ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	MULTI-MSMS	A375_MHC_IP_R1	1	479.67730712890625	2	479.277441	956.540328	-0.2405	-0.00011527	0.24507	0.00011745	0.0045651	2.188E-06	479.2774316255571	109.94	4.5331	109.94	108.36	112.89	0					246	88	4	0	0	0	0.73415	1	40633	40633		3.9444	1.6417	1	18064000			37470	912	27431	27657	36495	36495					0.06031992020336929
NLVKGPRSS	9	Unmodified	_NLVKGPRSS_					0	0	0		ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	MULTI-MSMS	A375_MHC_IP_R1	1	479.6773681640625	2	479.277441	956.540328	-0.04758	-2.2804E-05	0.051625	2.4743E-05	0.0040458	1.9391E-06	479.27735550984244	114.71	5.1273	114.71	112.89	118.02	0					275	100	3	0	0	0	0.70886	6	41651	41651;41863;42080;42494;42706;42926		6.2058	2.6093	1	60362000			37471	912	27431	27657	36496;36497;36498;36499;36500;36501	36496					0.06031992020336929
NLVKGPRSS	9	Unmodified	_NLVKGPRSS_					0	0	0		ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	MULTI-MSMS	A375_MHC_IP_R2	2	479.67718505859375	2	479.277441	956.540328	-0.44288	-0.00021226	0.18313	8.7771E-05	-0.25974	-0.00012449	479.27740587608423	109.27	5.8121	110.01	107.38	113.19	0.74683					289	113	4	0	0	0	0.70886	2	41237	41237;41435		6.2058	2.9245	1	18458000			37472	912	27431	27657	36502;36503	36502					0.06031992020336929
NLVKGPRSS	9	Unmodified	_NLVKGPRSS_					0	0	0		ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	MULTI-MSMS	A375_MHC_IP_R2	2	479.6769714355469	2	479.277441	956.540328	-0.36367	-0.0001743	-0.0040912	-1.9608E-06	-0.36776	-0.00017626	479.2773251011022	115.33	5.995	116.02	113.03	119.03	0.68999					294	117	3	0	0	0	0.70886	4	42895	42895;43299;43511;44295		6.2058	2.6093	1	60713000			37473	912	27431	27657	36504;36505;36506;36507	36504					0.06031992020336929
NLVKLDLLEEK	11	Unmodified	_NLVKLDLLEEK_					0	0	0		nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA;ACACA|p.S392Ffs*23|1|0.15|ENSG00000278540|chr17:37263839-37263840|-/A|frameshift_variant	nc|ENSG00000278540|Q13085|ACACA	nc|ENSG00000278540|Q13085|ACACA	MULTI-MSMS	A375_MHC_IP_R1	1	657.786376953125	2	657.387385	1312.76022	-0.82667	-0.00054344	0.19959	0.00013121	-0.62708	-0.00041223	657.3873751882792	143.02	1.0552	143.02	142.49	143.54	0					69	20	5	0	0	0	0.73795	1	54965	54965		1.3295	0	1	33479000			37474	10037	27432	27658	36508	36508					0.11634753117391483
NLVKLDLLEEK	11	Unmodified	_NLVKLDLLEEK_					0	0	0		nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA;ACACA|p.S392Ffs*23|1|0.15|ENSG00000278540|chr17:37263839-37263840|-/A|frameshift_variant	nc|ENSG00000278540|Q13085|ACACA	nc|ENSG00000278540|Q13085|ACACA	MULTI-MSMS	A375_MHC_IP_R2	2	657.7864990234375	2	657.387385	1312.76022	-0.71991	-0.00047326	0.10646	6.9988E-05	-0.61345	-0.00040327	657.3873106384641	143.08	0.96156	143.11	142.58	143.54	0.030731					64	18	5	0	0	0	0.73795	1	56023	56023		1.3295	0	1	36435000			37475	10037	27432	27658	36509	36509					0.11634753117391483
NLVKLDLLEEK	11	Unmodified	_NLVKLDLLEEK_					0	0	0		nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA;ACACA|p.S392Ffs*23|1|0.15|ENSG00000278540|chr17:37263839-37263840|-/A|frameshift_variant	nc|ENSG00000278540|Q13085|ACACA	nc|ENSG00000278540|Q13085|ACACA	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	657.387385	1312.76022	-0.82667	-0.00054344	0.19959	0.00013121	-0.62708	-0.00041223	657.3873751882792	143.02	1.0552	143.02	142.49	143.54	0	-0.046893	5.0016E-05	NaN	1.3295	69	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33479000			37476	10037	27432	27658							0.11634753117391483
NLVKLDLLEEK	11	Unmodified	_NLVKLDLLEEK_					0	0	0		nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA;ACACA|p.S392Ffs*23|1|0.15|ENSG00000278540|chr17:37263839-37263840|-/A|frameshift_variant	nc|ENSG00000278540|Q13085|ACACA	nc|ENSG00000278540|Q13085|ACACA	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	657.387385	1312.76022	-0.71991	-0.00047326	0.10646	6.9988E-05	-0.61345	-0.00040327	657.3873106384641	143.08	0.96156	143.11	142.58	143.54	0.030731	0.046893	-7.242E-05	NaN	1.3295	64	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36435000			37477	10037	27432	27658							0.11634753117391483
NLVKTLTS	8	Unmodified	_NLVKTLTS_					0	0	0			REV__nc|ENSG858|P60608|ERVFC1-1	REV__nc|ENSG858|P60608|ERVFC1-1	MULTI-SECPEP	A375_MHC_IP_R2	2	438.5433044433594	2	438.263468	874.512382	-0.11466	-5.0249E-05	0.67547	0.00029604	0.56082	0.00024579	438.2634008767625	142.78	0.2547	142.81	142.58	142.84	0.030731					5	4	2	0	0	0	0.972	1	55779	55779		2.0598	0	1	1059600	+		37478	27576	27433	27659	36510	36510					0.07010669040232642
NLVLEKSSR	9	Unmodified	_NLVLEKSSR_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-MSMS	A375_MHC_IP_R1	1	523.7035522460938	2	523.303655	1044.59276	-0.24111	-0.00012617	-0.40728	-0.00021313	-0.64839	-0.0003393	523.3033734205653	117.25	1.2694	117.25	116.29	117.56	0					45	24	2	0	0	0	0.73804	1	42769	42769		3.5965	0.60125	1	20638000			37479	6823	27434	27660	36511	36511					0.07224530363305348
NLVLEKSSR	9	Unmodified	_NLVLEKSSR_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-MSMS	A375_MHC_IP_R1	1	523.7030639648438	2	523.303655	1044.59276	-0.80537	-0.00042145	0.14159	7.4095E-05	-0.66377	-0.00034736	523.3035975391789	120.93	1.4689	120.93	120.35	121.82	0					37	28	2	0	0	0	0.73804	1	44837	44837		3.5965	0.31518	1	21904000			37480	6823	27434	27660	36512	36512					0.07224530363305348
NLVLFIVLRRY	11	Unmodified	_NLVLFIVLRRY_					0	0	0		ENST00000430069.5_1_3:176914178-176914250:-|nuORF	ENST00000430069.5_1_3:176914178-176914250:-|nuORF	ENST00000430069.5_1_3:176914178-176914250:-|nuORF	MSMS	A375_MHC_IP_R2	2	703.4357299804688	2	703.437547	1404.86054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.416	1	83.159	82.659	83.659	0.74293								0	0	0	0.16334	1	31306	31306		1.3295	0	1				37481	11851	27435	27661	36513	36513					0.174304549616636
NLVNGRLQ	8	Unmodified	_NLVNGRLQ_					0	0	0			REV__ENST00000340703.5_1_4:9694764-9704575:+|nuORF	REV__ENST00000340703.5_1_4:9694764-9704575:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	457.6639099121094	2	457.264333	912.514114	-0.0093697	-4.2844E-06	0.19438	8.8882E-05	0.18501	8.4597E-05	457.26432263275507	109.18	6.309	109.18	107.95	114.26	0					351	123	3	0	0	0	0.77797	2	40834	40834;41444		2.3027	0	1	34386000	+		37482	23722	27436	27662	36514;36515	36514					0.05435722848869773
NLVQRIQNKP	10	Unmodified	_NLVQRIQNKP_					0	0	0		nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000231991|A6NMY6|ANXA2P2	MULTI-MSMS	A375_MHC_IP_R2	2	1210.4974365234375	1	1209.70623	1208.69895	0.22358	0.00027047	-1.6414	-0.0019856	-1.4178	-0.0017152	1209.7028248723782	124.19	0.15324	124.52	124.39	124.55	0.32969					4	2	2	0	0	0	0.71455	1	47957	47957		6.2058	0.47393	1	13753000			37483	14909	27437	27663	36516	36516					0.10295285928623343
NLVQYYLRWKN	11	Unmodified	_NLVQYYLRWKN_					0	0	0			REV__nc|ENSG00000226098|P0C7V7|SEC11B	REV__nc|ENSG00000226098|P0C7V7|SEC11B	MULTI-MSMS	A375_MHC_IP_R1	1	749.8041381835938	2	748.904068	1495.79358	-0.45869	-0.00034351	-1.2275	-0.00091928	-1.6862	-0.0012628	749.4042411171727	63.281	0.46067	63.281	62.966	63.427	0					12	8	2	0	0	0	0.7362	1	22883	22883		2.9952	0.26005	1	1941900	+		37484	27505	27438	27664	36517	36517					0.06551799679914438
NLVRGKPM	8	Unmodified	_NLVRGKPM_					0	0	0			REV__GPC3|p.D485N|1|0.3|ENSG00000147257|chrX:133596560-133596560|C/T|missense_variant	REV__GPC3|p.D485N|1|0.3|ENSG00000147257|chrX:133596560-133596560|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	457.66387939453125	2	457.765655	913.516756	-0.35802	-0.00016389	0.52138	0.00023867	0.16336	7.478E-05	457.76588867829906	106.22	1.5759	106.98	106.68	108.26	0.75977					44	30	2	0	0	0	0.7773	1	40114	40114		4.756	0.42677	1	1817000	+		37485	26694	27439	27665	36518	36518					0.05653854982165285
NLVTLYWNL	9	Unmodified	_NLVTLYWNL_					0	0	0			REV__TAS2R50|p.T136*|1|0.48|ENSG00000212126|chr12:10986452-10986455|AAGT/-|frameshift_variant	REV__TAS2R50|p.T136*|1|0.48|ENSG00000212126|chr12:10986452-10986455|AAGT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	568.1822509765625	2	568.310949	1134.60735	-0.33137	-0.00018832	-3.0958	-0.0017594	-3.4272	-0.0019477	568.3090601007481	64.759	0.61052	65.497	65.002	65.613	0.73812					15	11	2	0	0	0	0.65246	1	24414	24414		10.824	2.2306	1	754880	+		37486	22604	27440	27666	36519	36519					0.04542602511401128
NLVTSRRFKG	10	Unmodified	_NLVTSRRFKG_					0	0	0			REV__ENST00000380882.5_4:85656-87337:+|nuORF	REV__ENST00000380882.5_4:85656-87337:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	393.6310119628906	3	393.231523	1176.67274	-0.18314	-7.2016E-05	-0.71793	-0.00028231	-0.90107	-0.00035433	393.2311563018118	130.8	0.45723	131.02	130.91	131.36	0.2142					14	8	2	0	0	0	0.72416	1	51492	51492		0.62683	0.063655	1	7227100	+		37487	24226	27441	27667	36520	36520					0.09147016757128767
NLVVPLEASA	10	Unmodified	_NLVVPLEASA_					0	0	0			REV__ENST00000268616.8_1_16:87441547-87441679:-|nuORF	REV__ENST00000268616.8_1_16:87441547-87441679:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1013.6273193359375	1	1012.56734	1011.56006	0.078222	7.9205E-05	1.5617	0.0015813	1.6399	0.0016605	1013.5718305964521	104.9	0.91397	105.66	105.31	106.22	0.76308					27	17	2	0	0	0	0.70651	1	39871	39871		9.3831	2.66	1	4349300	+		37488	23266	27442	27668	36521	36521					0.05474323240434842
NLWEDPYYL	9	Unmodified	_NLWEDPYYL_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-3|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MSMS	A375_MHC_IP_R1	1	606.77001953125	2	606.782222	1211.54989	-0.13204	-8.0118E-05	0.093409	5.6679E-05	-0.038629	-2.3439E-05	607.2837989669733	128.09	0.20277	128.09	127.97	128.18	0					5	3	2	0	0	0	0.6656	1	49180	49180		10.074	0.6908	1	1621700			37489	8815	27443	27669	36522	36522					-0.04742284484791526
NLWGLWEV	8	Unmodified	_NLWGLWEV_					0	0	0			REV__ENSG00000168398|ENST00000554311|BDKRB2	REV__ENSG00000168398|ENST00000554311|BDKRB2	MULTI-MSMS	A375_MHC_IP_R1	1	508.692626953125	2	508.763635	1015.51272	-0.34596	-0.00017601	2.7303	0.0013891	2.3844	0.0012131	509.2663069179357	55.837	0.25256	55.837	55.738	55.991	0					6	4	2	0	0	0	0.77123	1	20017	20017		14.582	14.582	1	2404800	+		37490	20852	27444	27670	36523	36523					0.005580887600899587
NLWHRRHREDE	11	Unmodified	_NLWHRRHREDE_					0	0	0		ENSG00000274588|ENST00000611977|DGKK	ENSG00000274588|ENST00000611977|DGKK	ENSG00000274588|ENST00000611977|DGKK	MSMS	A375_MHC_IP_R1	1	773.9993896484375	2	774.382354	1546.75016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.65	1	101.65	101.15	102.15	0								0	0	0	0.16302	1	37355	37355		2.9952	1.151	1				37491	10006	27445	27671	36524	36524					-0.001349970446426596
NLWIGVVG	8	Unmodified	_NLWIGVVG_					0	0	0			REV__RNF135|p.R372K|1|0.76|ENSG00000181481|chr17:30999007-30999007|G/A|missense_variant	REV__RNF135|p.R372K|1|0.76|ENSG00000181481|chr17:30999007-30999007|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	429.2908020019531	2	429.247621	856.480688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.4	1	141.4	140.9	141.9	0								0	0	0	0.16876	1	54275	54275		0.79363	0	1		+		37492	21652	27446	27672	36525	36525					0.046707210769682206
NLWPMILTL	9	Unmodified	_NLWPMILTL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF;ENST00000507771.5_1_17:48154781-48156326:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2117309570312	2	550.81227	1099.60999	-0.85909	-0.00047319	1.431	0.00078823	0.57194	0.00031503	550.8122585735939	137.59	0.35594	137.59	137.49	137.84	0					11	6	3	0	0	0	0.14606	1	52970	52970		81.613	29.345	1	1271400			37493	903	27447	27673	36526	36526					0.06416734644722055
NLWSLSYVTTL	11	Unmodified	_NLWSLSYVTTL_					0	0	0		ENST00000519705.1_1_8:43052051-43054709:+|nuORF;ENSG00000165102|ENST00000379644|HGSNAT;nc|ENSG00000165102|Q68CP4|HGSNAT	ENST00000519705.1_1_8:43052051-43054709:+|nuORF	ENST00000519705.1_1_8:43052051-43054709:+|nuORF	MSMS	A375_MHC_IP_R2	2	648.7528686523438	2	648.845353	1295.67615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.22	1	110.95	110.45	111.45	0.73692								0	0	0	0.16108	1	41580	41580		13.042	0	1				37494	6912	27448	27674	36527	36527					0.04014222020464331
NLYAERNMF	9	Unmodified	_NLYAERNMF_					0	0	0			REV__tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1	REV__tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	578.6979370117188	2	579.274041	1156.53353	-0.40854	-0.00023666	-0.12468	-7.2221E-05	-0.53322	-0.00030888	579.2738879975564	41.088	0.60718	41.088	40.863	41.47	0					15	11	2	0	0	0	0.74412	1	14289	14289		10.074	10.074	1	2239500	+		37495	28259	27449	27675	36528	36528					-0.03847688922564885
NLYAERNMF	9	Unmodified	_NLYAERNMF_					0	0	0			REV__tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1	REV__tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	579.274041	1156.53353	-0.33036	-0.00019137	0.58438	0.00033852	0.25401	0.00014714	579.7761250083427	40.41	0.45602	41.184	40.93	41.386	0.77451	0.047879	0.00055059	NaN	10.074	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1630100	+		37496	28259	27449	27675							-0.03847688922564885
NLYDRFYL	8	Unmodified	_NLYDRFYL_					0	0	0			REV__tr|U7STY5|U7STY5_FUSNUGrpBfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01030PE=4SV=1	REV__tr|U7STY5|U7STY5_FUSNUGrpBfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01030PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	551.8428344726562	2	552.279649	1102.54475	-0.6549	-0.00036169	-0.73273	-0.00040467	-1.3876	-0.00076636	552.2794764130696	84.002	0.91152	84.002	83.38	84.292	0					29	17	2	0	0	0	0.9187	1	30673	30673		19.257	6.7254	1	2544000	+		37497	28518	27450	27676	36529	36529					-0.0024254355676021078
NLYETNGASL	10	Unmodified	_NLYETNGASL_					0	0	0		tr|U7ST76|U7ST76_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01318PE=4SV=1	tr|U7ST76|U7ST76_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01318PE=4SV=1	tr|U7ST76|U7ST76_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01318PE=4SV=1	MSMS	A375_MHC_IP_R1	1	541.1784057617188	2	541.261653	1080.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.786	1	80.786	80.286	81.286	0								0	0	0	0.12703	1	29514	29514		36.127	10.728	1				37498	29663	27451	27677	36530	36530					-0.028280455243020697
NLYETNGASL	10	Unmodified	_NLYETNGASL_					0	0	0		tr|U7ST76|U7ST76_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01318PE=4SV=1	tr|U7ST76|U7ST76_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01318PE=4SV=1	tr|U7ST76|U7ST76_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01318PE=4SV=1	MSMS	A375_MHC_IP_R2	2	541.2073364257812	2	541.261653	1080.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.005	1	80.75	80.25	81.25	0.74474								0	0	0	0.13854	1	30370	30370		30.637	7.4881	1				37499	29663	27451	27677	36531	36531					-0.028280455243020697
NLYETNWEV	9	Unmodified	_NLYETNWEV_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-3|DNAH1;ENST00000497875.1_1_3:52356446-52387784:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	A375_MHC_IP_R2	2	584.6690673828125	2	584.269478	1166.5244	-0.29778	-0.00017399	-0.5021	-0.00029336	-0.79988	-0.00046735	584.2693357442932	46.656	0.6599	47.419	47.006	47.666	0.76281					19	12	2	0	0	0	0.65527	1	17521	17521		12.241	0	1	2525800			37500	3248	27452	27678	36532	36532					-0.05219759007263747
NLYGLLHGL	9	Unmodified	_NLYGLLHGL_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-MSMS	A375_MHC_IP_R1	1	500.6846923828125	2	500.284734	998.554916	-0.18961	-9.4858E-05	-1.309	-0.00065487	-1.4986	-0.00074972	500.2847365527262	109.91	1.1188	109.91	109.37	110.49	0					73	21	5	0	0	0	0.061545	1	40218	40218		59.795	10.126	1	9184800			37501	3408	27453	27679	36533	36533					0.05558064168462806
NLYGLLHGL	9	Unmodified	_NLYGLLHGL_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-SECPEP	A375_MHC_IP_R2	2	500.6845703125	2	500.284734	998.554916	-0.53258	-0.00026644	0.31359	0.00015689	-0.21899	-0.00010956	500.28477082320563	108.67	0.86658	109.42	109.11	109.98	0.74683					37	16	4	0	0	0	0.079397	1	40998	40998		49.669	9.2203	1	7463800			37502	3408	27453	27679	36534	36534					0.05558064168462806
NLYKAPIL	8	Unmodified	_NLYKAPIL_					0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	MULTI-SECPEP	A375_MHC_IP_R2	2	466.6837158203125	2	466.284203	930.553853	-0.47282	-0.00022047	-0.86804	-0.00040475	-1.3409	-0.00062522	466.2838598063972	99.148	0.35788	99.908	99.808	100.17	0.75977					10	6	3	0	0	0	0.85124	1	37623	37623		19.439	1.304	1	2463200			37503	866	27454	27680	36535	36535					0.08579849799559724
NLYLLVSWD	9	Unmodified	_NLYLLVSWD_					0	0	0		ENST00000513391.2_2_4:48850439-48852008:+|nuORF	ENST00000513391.2_2_4:48850439-48852008:+|nuORF	ENST00000513391.2_2_4:48850439-48852008:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	561.2037353515625	2	561.795132	1121.57571	-0.47698	-0.00026797	-3.5284	-0.0019823	-4.0054	-0.0022502	561.7954142223139	84.725	0.45409	85.461	85.12	85.574	0.73601					12	8	2	0	0	0	0.74412	1	32232	32232		6.2058	0	1	827650			37504	12932	27455	27681	36536	36536					0.019786097574751693
NLYPFVKTV	9	Unmodified	_NLYPFVKTV_					0	0	0		nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF;ENST00000427397.5_1_2:216176945-216197107:+|nuORF	nc|ENSG00000138363|P31939-2|ATIC	nc|ENSG00000138363|P31939-2|ATIC	MULTI-SECPEP	A375_MHC_IP_R1	1	541.208251953125	2	540.808042	1079.60153	-0.70785	-0.00038281	-0.037594	-2.0331E-05	-0.74544	-0.00040314	540.807980717065	81.025	1.6719	81.025	80.492	82.163	0					80	32	4	0	0	0	0.14606	1	29548	29548		47.594	27.141	1	39529000			37505	4983	27456	27682	36537	36537					0.06491503999745873
NLYPFVKTV	9	Unmodified	_NLYPFVKTV_					0	0	0		nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF;ENST00000427397.5_1_2:216176945-216197107:+|nuORF	nc|ENSG00000138363|P31939-2|ATIC	nc|ENSG00000138363|P31939-2|ATIC	MULTI-SECPEP	A375_MHC_IP_R2	2	541.2073364257812	2	540.808042	1079.60153	-0.83552	-0.00045186	-0.088333	-4.7771E-05	-0.92385	-0.00049963	540.8079582085632	80.187	1.7258	80.932	80.505	82.231	0.74474					70	33	4	0	0	0	0.37663	1	30370	30370		36.506	20.659	1	35132000			37506	4983	27456	27682	36538	36538					0.06491503999745873
NLYSFENNY	9	Unmodified	_NLYSFENNY_					0	0	0		nc|ENSG00000009694|Q9UKZ4-2|TENM1;ENSG00000009694|ENST00000371130|TENM1	nc|ENSG00000009694|Q9UKZ4-2|TENM1	nc|ENSG00000009694|Q9UKZ4-2|TENM1	MSMS	A375_MHC_IP_R1	1	582.17919921875	2	582.253828	1162.4931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.165	1	87.165	86.665	87.665	0								0	0	0	0.15486	1	31979	31979		11.64	2.2572	1				37507	969	27457	27683	36539	36539					-0.0816433204133773
NMAEEIIRY	9	Unmodified	_NMAEEIIRY_					0	0	0			REV__tr|U7SNR7|U7SNR7_FUSNU1-deoxy-D-xylulose5-phosphatereductoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dxrPE=3SV=1	REV__tr|U7SNR7|U7SNR7_FUSNU1-deoxy-D-xylulose5-phosphatereductoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dxrPE=3SV=1	MSMS	A375_MHC_IP_R1	1	569.7020874023438	2	569.781699	1137.54884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.56	1	61.56	61.06	62.06	0								0	0	0	0.15003	1	22201	22201		21.537	1.0834	1		+		37508	28338	27458	27684	36540	36540					-0.014428221253638185
NMANMPPQV	9	Unmodified	_NMANMPPQV_					0	0	0		ARID1A|p.R1879Sfs*22|1|0.55|ENSG00000117713|chr1:26779531-26779532|-/T|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.G869S|1|0.32|ENSG00000117713|chr1:26763158-26763158|G/A|missense_variant	ARID1A|p.R1879Sfs*22|1|0.55|ENSG00000117713|chr1:26779531-26779532|-/T|frameshift_variant	ARID1A|p.R1879Sfs*22|1|0.55|ENSG00000117713|chr1:26779531-26779532|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	501.2842102050781	2	501.230787	1000.44702	-0.38177	-0.00019136	2.1827	0.001094	1.8009	0.00090267	501.231450870332	73.987	0.45627	73.987	73.69	74.146	0					12	8	2	0	0	0	0.55359	1	26991	26991		28.487	10.352	1	434460			37509	177	27459	27685	36541	36541					-0.05318391748767226
NMFKLFKD	8	Unmodified	_NMFKLFKD_					0	0	0			REV__PIP5K1B|p.R386K|1|0.2|ENSG00000107242|chr9:68923342-68923342|G/A|missense_variant	REV__PIP5K1B|p.R386K|1|0.2|ENSG00000107242|chr9:68923342-68923342|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	521.7060546875	2	521.773145	1041.53174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.087	1	64.087	63.587	64.587	0								0	0	0	0.16876	1	23181	23181		7.2892	1.5574	1		+		37510	27781	27460	27686	36542	36542					0.012633020594876143
NMLPQIFRV	9	Unmodified	_NMLPQIFRV_					0	0	0		ENSG00000047621|ENST00000261250|C12orf4;ENST00000544258.1_3_12:4598975-4611546:-|nuORF	ENSG00000047621|ENST00000261250|C12orf4	ENSG00000047621|ENST00000261250|C12orf4	MULTI-MSMS	A375_MHC_IP_R1	1	559.7122192382812	2	559.312969	1116.61138	-0.28494	-0.00015937	-0.45993	-0.00025724	-0.74487	-0.00041661	559.3129602956566	109.44	0.71394	109.44	109.02	109.73	0					24	13	3	0	0	0	0.091096	1	40153	40153		52.268	26.869	1	2707500			37511	1203	27461	27687	36543	36543					0.05774368733477786
NMLPQIFRV	9	Unmodified	_NMLPQIFRV_					0	0	0		ENSG00000047621|ENST00000261250|C12orf4;ENST00000544258.1_3_12:4598975-4611546:-|nuORF	ENSG00000047621|ENST00000261250|C12orf4	ENSG00000047621|ENST00000261250|C12orf4	MULTI-SECPEP	A375_MHC_IP_R2	2	559.7132568359375	2	559.312969	1116.61138	-0.65811	-0.00036809	-0.37593	-0.00021026	-1.034	-0.00057835	559.3130251730582	108.46	0.76452	109.21	108.86	109.63	0.75436					22	14	2	0	0	0	0.24548	1	40952	40952		43.858	18.459	1	2799100			37512	1203	27461	27687	36544	36544					0.05774368733477786
NMLTGVSSVVL	11	Unmodified	_NMLTGVSSVVL_					0	0	0		LGR5|p.A611V|1|0.22|ENSG00000139292|chr12:71583842-71583842|C/T|missense_variant	LGR5|p.A611V|1|0.22|ENSG00000139292|chr12:71583842-71583842|C/T|missense_variant	LGR5|p.A611V|1|0.22|ENSG00000139292|chr12:71583842-71583842|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	559.7132568359375	2	560.307549	1118.60055	-0.62628	-0.00035091	-2.4289	-0.0013609	-3.0551	-0.0017118	560.3061473486417	108.39	0.35686	109.15	108.92	109.27	0.75436					9	6	2	0	0	0	0.88538	1	40952	40952		18.146	0	1	1014800			37513	14293	27462	27688	36545	36545					0.045989215685494855
NMMKWKTE	8	Unmodified	_NMMKWKTE_					0	0	0			REV__GHR|p.D208N|1|0.5|ENSG00000112964|chr5:42711210-42711210|G/A|missense_variant	REV__GHR|p.D208N|1|0.5|ENSG00000112964|chr5:42711210-42711210|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1244506835938	2	534.254262	1066.49397	-1.1422	-0.00061024	-0.19445	-0.00010389	-1.3367	-0.00071413	534.2544587279292	59.657	0.7077	60.405	60.198	60.906	0.74714					18	13	2	0	0	0	0.96266	1	22602	22602		16.942	6.8684	1	1739300	+		37514	26679	27463	27689	36546	36546					-0.036615321976341875
NMMSGISSV	9	2 Oxidation (M)	_NM(Oxidation (M))M(Oxidation (M))SGISSV_		NM(1)M(1)SGISSV		NM(44)M(44)SGISSV	0	0	2		ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	A375_MHC_IP_R2	2	479.6043701171875	2	479.204435	956.394317	-0.60417	-0.00028952	-0.058801	-2.8178E-05	-0.66297	-0.0003177	479.2043926115668	32.57	0.66116	33.307	33.061	33.722	0.73692					19	12	2	0	0	0	0.13845	1	11608	11608		43.772	19.752	1	5583500			37515	2276	27464	27690	36547	36547		92;93			-0.08562394602222412
NMMSGISSV	9	2 Oxidation (M)	_NM(Oxidation (M))M(Oxidation (M))SGISSV_		NM(1)M(1)SGISSV		NM(110)M(110)SGISSV	0	0	2		ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	A375_MHC_IP_R2	2	957.8007202148438	1	957.401594	956.394317	-0.17868	-0.00017107	-0.50865	-0.00048699	-0.68734	-0.00065806	957.4010347731879	32.62	0.55937	33.357	33.112	33.671	0.73692					16	10	2	0	0	0	0.0096896	1	11632	11632		110.67	80.038	1	3327600			37516	2276	27464	27690	36548	36548		92;93			-0.08562394602222412
NMMSGISSV	9	2 Oxidation (M)	_NM(Oxidation (M))M(Oxidation (M))SGISSV_					0	0	2		ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MATCH	A375_MHC_IP_R1	1		1	957.401594	956.394317	0.0081642	7.8165E-06	-0.33536	-0.00032107	-0.32719	-0.00031326	957.4012376264428	33.279	0.50774	33.279	33.04	33.547	0	-0.039127	9.888E-05	NaN	110.67	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3752500			37517	2276	27464	27690				92;93			-0.08562394602222412
NMNPSKIAHTE	11	Unmodified	_NMNPSKIAHTE_					0	0	0		PRSS54|p.D101N|1|0.83|ENSG00000103023|chr16:58286158-58286158|C/T|missense_variant	PRSS54|p.D101N|1|0.83|ENSG00000103023|chr16:58286158-58286158|C/T|missense_variant	PRSS54|p.D101N|1|0.83|ENSG00000103023|chr16:58286158-58286158|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	414.6003723144531	3	414.536283	1240.58702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.838	1	38.838	38.338	39.338	0								0	0	0	0.16124	1	13212	13212		12.228	4.2822	1				37518	15237	27465	27691	36549	36549					-0.023649362107107663
NMSDFIMKV	9	Unmodified	_NMSDFIMKV_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2;ENST00000463054.1_1_13:96529939-96547453:-|nuORF	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-MSMS	A375_MHC_IP_R1	1	543.1611328125	2	542.76192	1083.50929	-0.69807	-0.00037889	-0.68193	-0.00037012	-1.38	-0.00074901	542.7619202430459	95.271	1.5257	95.271	94.291	95.817	0					52	29	3	0	0	0	0.0094735	1	35004	35004		107.1	70.973	1	5665400			37519	2385	27466	27692	36550	36550					-0.029126654004357988
NMSDFIMKV	9	Unmodified	_NMSDFIMKV_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2;ENST00000463054.1_1_13:96529939-96547453:-|nuORF	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	A375_MHC_IP_R2	2	543.1614379882812	2	542.76192	1083.50929	-0.60469	-0.0003282	-0.29997	-0.00016281	-0.90466	-0.00049102	542.7620797595657	94.41	1.5198	95.154	94.362	95.882	0.74473					61	29	4	0	0	0	0.048303	1	35877	35877		74.2	45.118	1	6034900			37520	2385	27466	27692	36551	36551					-0.029126654004357988
NMSDFIMKV	9	Oxidation (M)	_NM(Oxidation (M))SDFIMKV_		NM(1)SDFIMKV		NM(46)SDFIM(-46)KV	0	0	1		ENSG00000102595|ENST00000376747|UGGT2;ENST00000463054.1_1_13:96529939-96547453:-|nuORF	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	A375_MHC_IP_R1	1	551.158935546875	2	550.759378	1099.5042	-0.50326	-0.00027717	0.036381	2.0037E-05	-0.46688	-0.00025714	550.7594647958396	68.773	1.015	68.773	68.463	69.478	0					35	19	3	0	0	0	0.13199	1	24901	24901		61.09	40.675	2	5539100			37521	2385	27466	27693	36552	36552		103;104			-0.04156969263067367
NMSDFIMKV	9	Oxidation (M)	_NM(Oxidation (M))SDFIMKV_		NM(1)SDFIMKV		NM(59)SDFIM(-59)KV	0	0	1		ENSG00000102595|ENST00000376747|UGGT2;ENST00000463054.1_1_13:96529939-96547453:-|nuORF	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	A375_MHC_IP_R2	2	551.1588134765625	2	550.759378	1099.5042	-0.70465	-0.00038809	-0.0074339	-4.0943E-06	-0.71208	-0.00039219	550.7594598091963	67.877	1.169	68.612	68.154	69.323	0.73512					48	22	3	0	0	0	0.09145	1	25697	25697		69.338	48.924	2	4141100			37522	2385	27466	27693	36553	36553		103;104			-0.04156969263067367
NMSDFIMKV	9	2 Oxidation (M)	_NM(Oxidation (M))SDFIM(Oxidation (M))KV_		NM(1)SDFIM(1)KV		NM(65)SDFIM(65)KV	0	0	2		ENSG00000102595|ENST00000376747|UGGT2;ENST00000463054.1_1_13:96529939-96547453:-|nuORF	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	A375_MHC_IP_R1	1	559.1566162109375	2	558.756835	1115.49912	-0.46622	-0.00026051	0.07885	4.4058E-05	-0.38737	-0.00021645	558.7569221921733	47.487	0.55751	47.487	47.211	47.768	0					20	10	2	0	0	0	0.11849	1	16719	16719		64.927	44.473	1	4942200			37523	2385	27466	27694	36554	36554		103;104			-0.05401273125653461
NMSDFIMKV	9	2 Oxidation (M)	_NM(Oxidation (M))SDFIM(Oxidation (M))KV_		NM(1)SDFIM(1)KV		NM(57)SDFIM(57)KV	0	0	2		ENSG00000102595|ENST00000376747|UGGT2;ENST00000463054.1_1_13:96529939-96547453:-|nuORF	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-MSMS	A375_MHC_IP_R2	2	559.1561889648438	2	558.756835	1115.49912	-0.53491	-0.00029888	-0.34927	-0.00019516	-0.88418	-0.00049404	558.7566461647343	46.675	0.81493	47.437	47.104	47.919	0.76129					32	15	3	0	0	0	0.068433	1	17492	17492		57.108	28.026	1	4179900			37524	2385	27466	27694	36555	36555		103;104			-0.05401273125653461
NMTASTYSL	9	Unmodified	_NMTASTYSL_					0	0	0		nc|ENSG00000170921|Q9HCD6-4|TANC2;nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;nc|ENSG00000170921|Q9HCD6-3|TANC2	nc|ENSG00000170921|Q9HCD6-4|TANC2	nc|ENSG00000170921|Q9HCD6-4|TANC2	MSMS	A375_MHC_IP_R2	2	494.1790771484375	2	494.226225	986.437897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.247	1	90.978	90.478	91.478	0.7318								0	0	0	0.15283	1	34336	34336		16.942	2.3606	1				37525	7560	27467	27695	36556	36556					-0.05586461833445355
NMVAKVDEV	9	Oxidation (M)	_NM(Oxidation (M))VAKVDEV_		NM(1)VAKVDEV		NM(72)VAKVDEV	0	0	1		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-SECPEP	A375_MHC_IP_R1	1	511.1545104980469	2	510.755149	1019.49575	-0.67611	-0.00034533	-0.34548	-0.00017646	-1.0216	-0.00052178	510.7551140435498	26.973	0.50149	26.973	26.728	27.229	0					16	9	2	0	0	0	0.076731	1	8087	8087		71.708	26.008	1	7471900			37526	9318	27468	27696	36557	36557		429			-0.013221999080201385
NMVAKVDEV	9	Oxidation (M)	_NM(Oxidation (M))VAKVDEV_					0	0	1		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	510.755149	1019.49575	-1.11	-0.00056694	-0.57853	-0.00029549	-1.6885	-0.00086243	510.7551797034317	26.336	1.3257	26.996	26.805	28.131	0.65992	0.011781	-0.00019102	NaN	71.708	30	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7024400			37527	9318	27468	27696				429			-0.013221999080201385
NMVAKVDEV	9	Unmodified	_NMVAKVDEV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1568908691406	2	502.757692	1003.50083	-0.71372	-0.00035883	0.3445	0.0001732	-0.36922	-0.00018563	502.7576885536555	39.419	0.50806	40.194	39.914	40.422	0.77451					18	9	3	0	0	0	0.0575	1	14540	14540		76.825	0	1	8313400			37528	9318	27468	27697	36558	36558					-0.0007789604541130757
NMVDIIHSV	9	Unmodified	_NMVDIIHSV_					0	0	0		ENST00000475214.5_1_3:135974226-136045892:+|nuORF;ENSG00000114054|ENST00000251654|PCCB;nc|ENSG00000114054|P05166-2|PCCB	ENST00000475214.5_1_3:135974226-136045892:+|nuORF	ENST00000475214.5_1_3:135974226-136045892:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	514.665283203125	2	514.265684	1026.51682	-0.5299	-0.00027251	0.21179	0.00010891	-0.31811	-0.00016359	514.2655983962513	87.682	0.60922	87.682	87.34	87.949	0					27	11	3	0	0	0	0.012104	1	32149	32149		103.75	59.89	1	4631600			37529	3194	27469	27698	36559	36559					0.004618101914957151
NMVDIIHSV	9	Unmodified	_NMVDIIHSV_					0	0	0		ENST00000475214.5_1_3:135974226-136045892:+|nuORF;ENSG00000114054|ENST00000251654|PCCB;nc|ENSG00000114054|P05166-2|PCCB	ENST00000475214.5_1_3:135974226-136045892:+|nuORF	ENST00000475214.5_1_3:135974226-136045892:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	514.6653442382812	2	514.265684	1026.51682	-0.63455	-0.00032633	0.34186	0.00017581	-0.2927	-0.00015052	514.2656881275959	86.854	0.86352	87.587	87.203	88.067	0.733					32	16	3	0	0	0	0.012968	1	33014	33014		92.491	56.364	1	3834500			37530	3194	27469	27698	36560	36560					0.004618101914957151
NMYGKVVTV	9	Oxidation (M)	_NM(Oxidation (M))YGKVVTV_		NM(1)YGKVVTV		NM(83)YGKVVTV	0	0	1		SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	514.16796875	2	513.76806	1025.52157	-0.39833	-0.00020465	0.38668	0.00019867	-0.011642	-5.9814E-06	513.768016968454	38.698	1.982	38.698	38.118	40.1	0					87	38	3	0	0	0	0.02114	2	13294	13043;13294		82.529	44.555	1	10979000			37531	9018	27470	27699	36561;36562	36562		415			0.009826943342659433
NMYGKVVTV	9	Oxidation (M)	_NM(Oxidation (M))YGKVVTV_		NM(1)YGKVVTV		NM(120)YGKVVTV	0	0	1		SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	514.1676635742188	2	513.76806	1025.52157	-0.50913	-0.00026157	-0.30336	-0.00015585	-0.81248	-0.00041743	513.7679244832309	37.685	0.76461	37.685	37.454	38.218	0					35	14	4	0	0	0	0.01147	1	12703	12703		121.53	75.834	1	40720000			37532	9018	27470	27699	36563	36563		415			0.009826943342659433
NMYGKVVTV	9	Oxidation (M)	_NM(Oxidation (M))YGKVVTV_		NM(1)YGKVVTV		NM(46)YGKVVTV	0	0	1		SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	513.18359375	2	513.76806	1025.52157	-1.0187	-0.0005234	0.03651	1.8758E-05	-0.98224	-0.00050464	513.767977478408	37.876	1.8911	38.651	38.227	40.118	0.77451					75	36	3	0	0	0	0.12771	1	14001	14001		45.7	20.3	1	7630100			37533	9018	27470	27699	36564	36564		415			0.009826943342659433
NMYGKVVTV	9	Oxidation (M)	_NM(Oxidation (M))YGKVVTV_		NM(1)YGKVVTV		NM(86)YGKVVTV	0	0	1		SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	514.1671752929688	2	513.76806	1025.52157	-1.3724	-0.00070512	0.43955	0.00022583	-0.93289	-0.00047929	513.7682137690925	36.918	0.81311	37.689	37.41	38.223	0.7709					35	15	4	0	0	0	0.042716	1	13441	13441		86.332	51.93	1	38716000			37534	9018	27470	27699	36565	36565		415			0.009826943342659433
NMYGKVVTV	9	Unmodified	_NMYGKVVTV_					0	0	0		SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	506.2212829589844	2	505.770603	1009.52665	-0.69603	-0.00035203	0.058368	2.9521E-05	-0.63766	-0.00032251	505.7705961523836	48.398	0.96307	49.155	48.829	49.792	0.75737					42	18	4	0	0	0	0.0061124	1	18156	18156		133.05	85.304	1	21728000			37535	9018	27470	27700	36566	36566					0.022269981968747743
NNALGDLVLY	10	Unmodified	_NNALGDLVLY_					0	0	0		MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant;ENSG00000105429|ENST00000251268|MEGF8;nc|ENSG00000105429|Q7Z7M0-2|MEGF8;MEGF8|p.N261H|1|0.31|ENSG00000105429|chr19:42335338-42335338|A/C|missense_variant	MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant	MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	546.6897583007812	2	546.290214	1090.56587	-0.33921	-0.0001853	-0.11726	-6.4058E-05	-0.45647	-0.00024936	546.2901266794921	93.092	0.86551	93.092	92.668	93.533	0					40	16	3	0	0	0	0.17669	1	34146	34146		51.63	3.8811	1	5905100			37536	2606	27471	27701	36567	36567					0.02421421752092101
NNATKTFREF	10	Unmodified	_NNATKTFREF_					0	0	0		nc|ENSG00000143156|Q9Y5B8-2|NME7;ENSG00000143156|ENST00000367811|NME7	nc|ENSG00000143156|Q9Y5B8-2|NME7	nc|ENSG00000143156|Q9Y5B8-2|NME7	MULTI-MSMS	A375_MHC_IP_R2	2	410.2751159667969	3	409.875405	1226.60439	0.00081676	3.3477E-07	-0.5833	-0.00023908	-0.58248	-0.00023875	409.8751656175121	30.45	0.60531	31.169	30.911	31.517	0.71857					32	11	5	0	0	0	0.41205	1	10697	10697		23.964	9.7934	1	11756000			37537	5350	27472	27702	36568	36568					0.00014727386587765068
NNATKTFREF	10	Unmodified	_NNATKTFREF_					0	0	0		nc|ENSG00000143156|Q9Y5B8-2|NME7;ENSG00000143156|ENST00000367811|NME7	nc|ENSG00000143156|Q9Y5B8-2|NME7	nc|ENSG00000143156|Q9Y5B8-2|NME7	MULTI-MSMS	A375_MHC_IP_R2	2	614.709716796875	2	614.309469	1226.60439	-0.60183	-0.00036971	0.56412	0.00034654	-0.037705	-2.3163E-05	614.3093480294635	30.503	0.4049	31.221	30.962	31.367	0.71857					18	7	3	0	0	0	0.1587	1	10731	10731		53.47	5.8752	1	3867200			37538	5350	27472	27702	36569	36569					0.00014727386587765068
NNCCECCT	8	Unmodified	_NNCCECCT_					0	0	0			REV__SLCO6A1|p.R106C|1|0.47|ENSG00000205359|chr5:102498529-102498529|G/A|missense_variant	REV__SLCO6A1|p.R106C|1|0.47|ENSG00000205359|chr5:102498529-102498529|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	891.244140625	1	889.230706	888.223429	-0.080605	-7.1676E-05	-1.0101	-0.0008982	-1.0907	-0.00096987	889.2324893679111	50.807	4.5709	50.807	48.375	52.946	0					180	89	3	0	0	0	0.77844	2	17561	17561;17666		0.6015	0.6015	1	2126400	+		37539	22571	27473	27703	36570;36571	36570					-0.22515371516885807
NNCCECCT	8	Unmodified	_NNCCECCT_					0	0	0			REV__SLCO6A1|p.R106C|1|0.47|ENSG00000205359|chr5:102498529-102498529|G/A|missense_variant	REV__SLCO6A1|p.R106C|1|0.47|ENSG00000205359|chr5:102498529-102498529|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	891.05810546875	1	889.230706	888.223429	-0.1716	-0.00015259	-0.75474	-0.00067114	-0.92634	-0.00082373	889.2324632067251	79.984	3.5118	79.984	77.436	80.948	0					126	68	3	0	0	0	0.77861	3	29012	29012;29238;29318		0	0	1	1812100	+		37540	22571	27473	27703	36572;36573;36574	36572					-0.22515371516885807
NNCCECCT	8	Unmodified	_NNCCECCT_					0	0	0			REV__SLCO6A1|p.R106C|1|0.47|ENSG00000205359|chr5:102498529-102498529|G/A|missense_variant	REV__SLCO6A1|p.R106C|1|0.47|ENSG00000205359|chr5:102498529-102498529|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	888.8814086914062	1	889.230706	888.223429	-0.18555	-0.000165	-0.40795	-0.00036277	-0.59351	-0.00052776	889.2324485394784	82.083	3.1428	82.083	80.948	84.091	0					115	61	3	0	0	0	0.77861	1	30108	30108		0	0	1	2443200	+		37541	22571	27473	27703	36575	36575					-0.22515371516885807
NNCCECCT	8	Unmodified	_NNCCECCT_					0	0	0			REV__SLCO6A1|p.R106C|1|0.47|ENSG00000205359|chr5:102498529-102498529|G/A|missense_variant	REV__SLCO6A1|p.R106C|1|0.47|ENSG00000205359|chr5:102498529-102498529|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	888.838623046875	1	889.230706	888.223429	-0.19078	-0.00016965	-0.8108	-0.00072099	-1.0016	-0.00089064	889.2326309286537	99.112	4.0538	99.112	96.934	100.99	0					152	79	3	0	0	0	0.77861	1	36324	36324		0	0	1	1910100	+		37542	22571	27473	27703	36576	36576					-0.22515371516885807
NNCCECCT	8	Unmodified	_NNCCECCT_					0	0	0			REV__SLCO6A1|p.R106C|1|0.47|ENSG00000205359|chr5:102498529-102498529|G/A|missense_variant	REV__SLCO6A1|p.R106C|1|0.47|ENSG00000205359|chr5:102498529-102498529|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	889.6320190429688	1	889.230706	888.223429	-0.57339	-0.00050988	-1.1324	-0.001007	-1.7058	-0.0015169	889.232387416414	142.76	2.0442	142.76	142.44	144.48	0					57	43	3	0	0	0	0.77861	1	55084	55084		0	0	1	656640	+		37543	22571	27473	27703	36577	36577					-0.22515371516885807
NNCCECCT	8	Unmodified	_NNCCECCT_					0	0	0			REV__SLCO6A1|p.R106C|1|0.47|ENSG00000205359|chr5:102498529-102498529|G/A|missense_variant	REV__SLCO6A1|p.R106C|1|0.47|ENSG00000205359|chr5:102498529-102498529|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	889.9102172851562	1	889.230706	888.223429	-0.0088135	-7.8372E-06	-1.0155	-0.00090298	-1.0243	-0.00091081	889.2324654406292	46.19	6.2436	46.19	42.79	49.033	0					213	122	3	0	0	0	0.972	1	16161	16161		0	0	1	1966100	+		37544	22571	27473	27703	36578	36578					-0.22515371516885807
NNCCECCT	8	Unmodified	_NNCCECCT_					0	0	0			REV__SLCO6A1|p.R106C|1|0.47|ENSG00000205359|chr5:102498529-102498529|G/A|missense_variant	REV__SLCO6A1|p.R106C|1|0.47|ENSG00000205359|chr5:102498529-102498529|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	889.3030395507812	1	889.230706	888.223429	-0.1716	-0.00015259	-0.75474	-0.00067114	-0.92634	-0.00082373	889.2324632067251	79.984	3.5118	79.984	77.436	80.948	0					126	68	3	0	0	0	0.972	1	29318	29318		0	0	1	1812100	+		37545	22571	27473	27703	36579	36579					-0.22515371516885807
NNCCECCT	8	Unmodified	_NNCCECCT_					0	0	0			REV__SLCO6A1|p.R106C|1|0.47|ENSG00000205359|chr5:102498529-102498529|G/A|missense_variant	REV__SLCO6A1|p.R106C|1|0.47|ENSG00000205359|chr5:102498529-102498529|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	889.2832641601562	1	889.230706	888.223429	-0.52522	-0.00046705	-0.6657	-0.00059196	-1.1909	-0.001059	889.2324844230634	73.25	4.5665	73.986	71.303	75.87	0.73541					163	89	3	0	0	0	0.77861	1	28179	28179		0	0	1	2156700	+		37546	22571	27473	27703	36580	36580					-0.22515371516885807
NNCCECCT	8	Unmodified	_NNCCECCT_					0	0	0			REV__SLCO6A1|p.R106C|1|0.47|ENSG00000205359|chr5:102498529-102498529|G/A|missense_variant	REV__SLCO6A1|p.R106C|1|0.47|ENSG00000205359|chr5:102498529-102498529|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	889.230706	888.223429	-0.080605	-7.1676E-05	-1.0101	-0.0008982	-1.0907	-0.00096987	889.2324893679111	50.807	4.5709	50.807	48.375	52.946	0	0	0	NaN	0.6015	180	89	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2126400	+		37547	22571	27473	27703							-0.22515371516885807
NNCCECCT	8	Unmodified	_NNCCECCT_					0	0	0			REV__SLCO6A1|p.R106C|1|0.47|ENSG00000205359|chr5:102498529-102498529|G/A|missense_variant	REV__SLCO6A1|p.R106C|1|0.47|ENSG00000205359|chr5:102498529-102498529|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	889.230706	888.223429	-0.57339	-0.00050988	-1.1324	-0.001007	-1.7058	-0.0015169	889.232387416414	142.76	2.0442	142.76	142.44	144.48	0	-0.089497	-0.00014256	NaN	0	57	43	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	656640	+		37548	22571	27473	27703							-0.22515371516885807
NNCCECCT	8	Unmodified	_NNCCECCT_					0	0	0			REV__SLCO6A1|p.R106C|1|0.47|ENSG00000205359|chr5:102498529-102498529|G/A|missense_variant	REV__SLCO6A1|p.R106C|1|0.47|ENSG00000205359|chr5:102498529-102498529|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		1	889.230706	888.223429	-0.28791	-0.00025602	-0.74289	-0.0006606	-1.0308	-0.00091662	889.2324421992976	142.91	1.3611	142.94	142.64	144	0.030731	0.089497	0.00020384	NaN	0	47	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	663000	+		37549	22571	27473	27703							-0.22515371516885807
NNDKSFNFL	9	Unmodified	_NNDKSFNFL_					0	0	0			REV__nc|ENSG00000080493|Q9Y6R1-3|SLC4A4	REV__nc|ENSG00000080493|Q9Y6R1-3|SLC4A4	MULTI-SECPEP	A375_MHC_IP_R2	2	366.9268493652344	3	366.845334	1097.51417	-0.21724	-7.9693E-05	-0.29679	-0.00010887	-0.51402	-0.00018857	366.84523547445224	24.486	0.60989	25.13	24.958	25.568	0.64368					25	11	4	0	0	0	0.58271	1	7977	7977		14.405	0	1	17132000	+		37550	16748	27474	27704	36581	36581					-0.03068321941805152
NNDTQKPV	8	Unmodified	_NNDTQKPV_					0	0	0			REV__ENST00000610253.5_1_11:108042863-108061204:-|nuORF	REV__ENST00000610253.5_1_11:108042863-108061204:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	457.6763916015625	2	458.230156	914.445759	-0.27725	-0.00012704	-0.82285	-0.00037706	-1.1001	-0.0005041	458.22960724908296	63.445	0.40743	64.185	63.987	64.394	0.74022					14	7	2	0	0	0	0.95423	1	24086	24086		7.9102	5.6074	1	738270	+		37551	19675	27475	27705	36582	36582					-0.0148856652166387
NNDTQKPV	8	Unmodified	_NNDTQKPV_					0	0	0			REV__ENST00000610253.5_1_11:108042863-108061204:-|nuORF	REV__ENST00000610253.5_1_11:108042863-108061204:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	458.230156	914.445759	-0.26088	-0.00011954	0.0064453	2.9534E-06	-0.25444	-0.00011659	458.2300536581581	64.243	0.40365	64.243	63.99	64.393	0	0.029093	0.00022026	NaN	7.9102	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	772950	+		37552	19675	27475	27705							-0.0148856652166387
NNEGEIDLMS	10	Unmodified	_NNEGEIDLMS_					0	0	0		nc|ENSG00000126878|Q9BQI0-4|AIF1L;ENSG00000126878|ENST00000247291|AIF1L;nc|ENSG00000126878|Q9BQI0-2|AIF1L	nc|ENSG00000126878|Q9BQI0-4|AIF1L	nc|ENSG00000126878|Q9BQI0-4|AIF1L	MULTI-SECPEP	A375_MHC_IP_R1	1	561.6644897460938	2	561.242603	1120.47065	-0.52423	-0.00029422	-2.3056	-0.001294	-2.8298	-0.0015882	561.7424905006851	77.108	0.71069	77.108	76.776	77.486	0					23	13	3	0	0	0	0.83355	1	28090	28090		17.113	3.605	1	1780200			37553	4067	27476	27706	36583	36583					-0.08476299501262474
NNEQDPYTT	9	Unmodified	_NNEQDPYTT_					0	0	0			REV__nc|ENSG00000163430|Q12841-2|FSTL1	REV__nc|ENSG00000163430|Q12841-2|FSTL1	MULTI-MSMS	A375_MHC_IP_R2	2	541.7216186523438	2	541.225268	1080.43598	-0.64921	-0.00035137	0.29281	0.00015848	-0.3564	-0.0001929	541.2253415020525	143.28	0.65515	143.3	142.88	143.54	0.024414					15	12	2	0	0	0	0.75523	1	55901	55901		2.0598	0	1	3996100	+		37554	20363	27477	27707	36584	36584					-0.10101799317703808
NNEVKKLIN	9	Unmodified	_NNEVKKLIN_					0	0	0			REV__tr|U7T8E8|U7T8E8_FUSNUTIGR00370familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00030PE=4SV=1	REV__tr|U7T8E8|U7T8E8_FUSNUTIGR00370familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00030PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	536.711669921875	2	536.31148	1070.60841	-0.95217	-0.00051066	0.50027	0.0002683	-0.4519	-0.00024236	536.3115850322725	132.21	1.5205	132.21	131.48	133	0					57	29	4	0	0	0	0.80516	1	50893	50893		3.9444	0.3479	1	54445000	+		37555	28887	27478	27708	36585	36585					0.07592816880332975
NNFESREACEE	11	Unmodified	_NNFESREACEE_					0	0	0		ENSG00000173714|ENST00000311378|WFIKKN2	ENSG00000173714|ENST00000311378|WFIKKN2	ENSG00000173714|ENST00000311378|WFIKKN2	MSMS	A375_MHC_IP_R2	2	664.2952270507812	2	664.264598	1326.51464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.72	1	137.8	137.3	138.3	0.083969								0	0	0	0.16265	1	54039	54039		4.897	1.3005	1				37556	7824	27479	27709	36586	36586					-0.13555315074881946
NNGGNGNG	8	Unmodified	_NNGGNGNG_					0	0	0		nc|ENSG00000185591|P08047-3|SP1;nc|ENSG00000185591|P08047-2|SP1;ENSG00000185591|ENST00000327443|SP1;SP1|p.A308Dfs*28|1|0.08|ENSG00000185591|chr12:53382870-53382882|CCAGCTTGGTATC/-|frameshift_variant	nc|ENSG00000185591|P08047-3|SP1	nc|ENSG00000185591|P08047-3|SP1	MULTI-MSMS	A375_MHC_IP_R1	1	352.5408935546875	2	352.141341	702.268129	-0.4057	-0.00014286	-0.47312	-0.0001666	-0.87882	-0.00030947	352.14108868001574	136.38	0.36151	136.38	136.2	136.56	0					11	6	3	0	0	0	0.77861	1	52556	52556		0	0	1	3895500			37557	8677	27480	27710	36587	36587					-0.09491397000999768
NNGGNGNG	8	Unmodified	_NNGGNGNG_					0	0	0		nc|ENSG00000185591|P08047-3|SP1;nc|ENSG00000185591|P08047-2|SP1;ENSG00000185591|ENST00000327443|SP1;SP1|p.A308Dfs*28|1|0.08|ENSG00000185591|chr12:53382870-53382882|CCAGCTTGGTATC/-|frameshift_variant	nc|ENSG00000185591|P08047-3|SP1	nc|ENSG00000185591|P08047-3|SP1	MULTI-MSMS	A375_MHC_IP_R2	2	352.54107666015625	2	352.141341	702.268129	-0.073624	-2.5926E-05	-0.44978	-0.00015839	-0.5234	-0.00018431	352.1411245153703	136.26	0.4059	136.38	136.2	136.6	0.11134					10	7	2	0	0	0	0.77861	1	53551	53551		0	0	1	4557000			37558	8677	27480	27710	36588	36588					-0.09491397000999768
NNHYELCPL	9	Unmodified	_NNHYELCPL_					0	0	0			REV__ENSG00000007202|ENST00000528896|BLTP2	REV__ENSG00000007202|ENST00000528896|BLTP2	MULTI-MSMS	A375_MHC_IP_R1	1	551.641357421875	2	551.752941	1101.49133	-0.51972	-0.00028676	-0.066251	-3.6554E-05	-0.58597	-0.00032331	551.7528383692504	59.621	0.50795	59.621	59.346	59.854	0					16	9	2	0	0	0	0.6898	1	21372	21372		7.9102	2.1783	1	2525000	+		37559	16151	27481	27711	36589	36589					-0.05535664330932377
NNISNNQSLYK	11	Unmodified	_NNISNNQSLYK_					0	0	0			REV__tr|U7SWG2|U7SWG2_FUSNUHelix-turn-helixtype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01026PE=4SV=1	REV__tr|U7SWG2|U7SWG2_FUSNUHelix-turn-helixtype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01026PE=4SV=1	MSMS	A375_MHC_IP_R2	2	432.2750244140625	3	432.217719	1293.63133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.823	1	40.598	40.098	41.098	0.77451								0	0	0	0.12828	1	14723	14723		23.964	16.019	1		+		37560	28603	27482	27712	36590	36590					-0.003742087928685578
NNKKAFII	8	Unmodified	_NNKKAFII_					0	0	0			REV__tr|U7STJ9|U7STJ9_FUSNUPeptidaseS26domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01512PE=4SV=1	REV__tr|U7STJ9|U7STJ9_FUSNUPeptidaseS26domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01512PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	474.68707275390625	2	474.287277	946.560001	-0.47484	-0.00022521	0.08185	3.8821E-05	-0.39299	-0.00018639	474.2871673425168	88.93	0.55463	89.661	89.381	89.936	0.7318					25	10	3	0	0	0	0.72761	1	33850	33850		26.341	0	1	2486100	+		37561	28493	27483	27713	36591	36591					0.08458368031085683
NNKLYSIEM	9	Unmodified	_NNKLYSIEM_					0	0	0			REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	556.1947021484375	2	556.276249	1110.53795	-0.76014	-0.00042285	-1.6794	-0.00093422	-2.4396	-0.0013571	556.2751520482876	75.913	0.55739	76.654	76.385	76.943	0.74052					12	10	2	0	0	0	0.41409	1	28797	28797		24.021	3.5669	1	1090800	+		37562	28309	27484	27714	36592	36592					-0.01290224499643955
NNKSIKIKT	9	Unmodified	_NNKSIKIKT_					0	0	0			REV__NEK4|p.T276I|1|0.22|ENSG00000114904|chr3:52760931-52760931|G/A|missense_variant	REV__NEK4|p.T276I|1|0.22|ENSG00000114904|chr3:52760931-52760931|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	523.7220458984375	2	523.321848	1044.62914	-0.80243	-0.00041993	0.22986	0.00012029	-0.57257	-0.00029964	523.3218663856467	137.2	1.3324	137.2	136.97	138.31	0					73	25	5	0	0	0	0.81363	1	53003	53003		0	0	1	49923000	+		37563	27591	27485	27715	36593	36593					0.10861407259994849
NNLLDSFKF	9	Unmodified	_NNLLDSFKF_					0	0	0			REV__nc|ENSG00000132554|Q8NE09-3|RGS22	REV__nc|ENSG00000132554|Q8NE09-3|RGS22	MULTI-SECPEP	A375_MHC_IP_R1	1	366.90118408203125	3	366.525713	1096.55531	0.13046	4.7815E-05	0.13313	4.8794E-05	0.26358	9.661E-05	366.52565557773363	27.206	0.5029	27.206	26.878	27.381	0					14	6	3	0	0	0	0.75214	1	8229	8229		11.518	11.518	1	3478100	+		37564	18662	27486	27716	36594	36594					0.010894390976773138
NNLLDSFKF	9	Unmodified	_NNLLDSFKF_					0	0	0			REV__nc|ENSG00000132554|Q8NE09-3|RGS22	REV__nc|ENSG00000132554|Q8NE09-3|RGS22	MULTI-SECPEP	A375_MHC_IP_R2	2	366.9256896972656	3	366.525713	1096.55531	-0.25044	-9.1792E-05	0.32687	0.00011981	0.076434	2.8015E-05	366.5259222753541	26.587	0.71212	27.247	26.805	27.517	0.65992					23	13	3	0	0	0	0.58126	1	9031	9031		20.871	12.427	1	4768100	+		37565	18662	27486	27716	36595	36595					0.010894390976773138
NNNGGGGGG	9	Unmodified	_NNNGGGGGG_					0	0	0			REV__FAM117B|p.E359Rfs*144|1|0.32|ENSG00000138439|chr2:202755647-202755647|T/-|frameshift_variant	REV__FAM117B|p.E359Rfs*144|1|0.32|ENSG00000138439|chr2:202755647-202755647|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	352.5412292480469	2	352.141341	702.268129	-0.42492	-0.00014963	0.085995	3.0282E-05	-0.33892	-0.00011935	352.1413706863203	137.75	0.25539	137.75	137.64	137.9	0					7	4	2	0	0	0	0.77827	1	53034	53034		0	0	1	850090	+		37566	26604	27487	27717	36596	36596					-0.094913970009884
NNNGGGGGG	9	Unmodified	_NNNGGGGGG_					0	0	0			REV__FAM117B|p.E359Rfs*144|1|0.32|ENSG00000138439|chr2:202755647-202755647|T/-|frameshift_variant	REV__FAM117B|p.E359Rfs*144|1|0.32|ENSG00000138439|chr2:202755647-202755647|T/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	352.141341	702.268129	-0.42492	-0.00014963	0.085995	3.0282E-05	-0.33892	-0.00011935	352.1413706863203	137.75	0.25539	137.75	137.64	137.9	0	0.034659	5.4054E-05	NaN	0	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	850090	+		37567	26604	27487	27717							-0.094913970009884
NNNGGGGGG	9	Unmodified	_NNNGGGGGG_					0	0	0			REV__FAM117B|p.E359Rfs*144|1|0.32|ENSG00000138439|chr2:202755647-202755647|T/-|frameshift_variant	REV__FAM117B|p.E359Rfs*144|1|0.32|ENSG00000138439|chr2:202755647-202755647|T/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	352.141341	702.268129	-0.040766	-1.4355E-05	-0.21396	-7.5343E-05	-0.25472	-8.9698E-05	352.1411367651032	137.6	0.20093	137.68	137.61	137.81	0.083969	-0.034659	-0.0001572	NaN	0	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	794340	+		37568	26604	27487	27717							-0.094913970009884
NNQKLLLEY	9	Unmodified	_NNQKLLLEY_					0	0	0		ENSG00000243710|ENST00000372492|CFAP57	ENSG00000243710|ENST00000372492|CFAP57	ENSG00000243710|ENST00000372492|CFAP57	MULTI-MSMS	A375_MHC_IP_R1	1	567.728515625	2	567.811313	1133.60807	-0.39784	-0.0002259	0.22739	0.00012912	-0.17045	-9.6784E-05	567.811377388485	39.418	0.86249	39.418	39.136	39.999	0					46	16	4	0	0	0	0.010037	1	13503	13503		96.285	2.3466	1	62638000			37569	9813	27488	27718	36597	36597					0.04661397160475644
NNQLNFIF	8	Unmodified	_NNQLNFIF_					0	0	0		tr|U7SX81|U7SX81_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00905PE=4SV=1	tr|U7SX81|U7SX81_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00905PE=4SV=1	tr|U7SX81|U7SX81_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00905PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	505.6578674316406	2	505.258717	1008.50288	-0.50258	-0.00025393	-0.41065	-0.00020748	-0.91323	-0.00046142	505.2584821107907	86.98	0.76124	86.98	86.527	87.289	0					32	14	3	0	0	0	0.90224	1	31890	31890		26.341	0	1	2241200			37570	29822	27489	27719	36598	36598					-0.0010309924529110503
NNQTPNEW	8	Unmodified	_NNQTPNEW_					0	0	0			REV__nc|ENSG00000142875|P22694-8|PRKACB	REV__nc|ENSG00000142875|P22694-8|PRKACB	MULTI-MSMS	A375_MHC_IP_R1	1	501.69293212890625	2	501.717413	1001.42027	0.084568	4.2429E-05	-0.77245	-0.00038755	-0.68788	-0.00034512	501.71694003415496	69.707	0.35351	69.707	69.529	69.882	0					9	6	2	0	0	0	0.77624	1	25293	25293		8.5933	6.0158	1	692740	+		37571	19327	27490	27720	36599	36599					-0.08038041044096644
NNQTPNEW	8	Unmodified	_NNQTPNEW_					0	0	0			REV__nc|ENSG00000142875|P22694-8|PRKACB	REV__nc|ENSG00000142875|P22694-8|PRKACB	MSMS	A375_MHC_IP_R2	2	501.64117431640625	2	501.717413	1001.42027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.213	1	69.948	69.448	70.448	0.73511								0	0	0	0.16876	1	26229	26229		4.756	1.8668	1		+		37572	19327	27490	27720	36600	36600					-0.08038041044096644
NNSDGEYMAGQ	11	Unmodified	_NNSDGEYMAGQ_					0	0	0		ENSG00000145996|ENST00000274695|CDKAL1;nc|ENSG00000145996|Q5VV42-3|CDKAL1	ENSG00000145996|ENST00000274695|CDKAL1	ENSG00000145996|ENST00000274695|CDKAL1	MULTI-MSMS	A375_MHC_IP_R1	1	593.26025390625	2	593.227484	1184.44042	-0.27762	-0.00016469	1.3892	0.00082411	1.1116	0.00065942	593.2282433068245	97.492	0.45349	97.492	97.187	97.641	0					14	8	2	0	0	0	0.7342	1	35768	35768		4.897	0.95262	1	1305100			37573	5598	27491	27721	36601	36601					-0.14442658166444744
NNSIEKSGWL	10	Unmodified	_NNSIEKSGWL_					0	0	0		nc|ENSG00000197006|Q9H1A3-2|METTL9;ENSG00000197006|ENST00000358154|METTL9	nc|ENSG00000197006|Q9H1A3-2|METTL9	nc|ENSG00000197006|Q9H1A3-2|METTL9	MULTI-SECPEP	A375_MHC_IP_R2	2	573.6596069335938	2	574.290745	1146.56694	-0.22581	-0.00012968	-3.723	-0.0021381	-3.9488	-0.0022678	574.7904611804905	74.085	0.30286	74.823	74.706	75.009	0.73752					7	5	2	0	0	0	0.88918	1	28161	28161		18.146	5.6148	1	2057100			37574	9101	27492	27722	36602	36602					-0.0004836387897739769
NNTYPHLSCF	10	Unmodified	_NNTYPHLSCF_					0	0	0		nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4	nc|ENSG00000091656|Q86UP3|ZFHX4	nc|ENSG00000091656|Q86UP3|ZFHX4	MSMS	A375_MHC_IP_R1	1	598.1744384765625	2	598.263673	1194.51279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.106	1	44.106	43.606	44.606	0								0	0	0	0.15136	1	15374	15374		15.248	0	1				37575	1985	27493	27723	36603	36603					-0.07668279302220071
NNWRRKRRWKR	11	Unmodified	_NNWRRKRRWKR_					0	0	0			REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF	REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF	MSMS	A375_MHC_IP_R1	1	828.8790893554688	2	828.48254	1654.95053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.62	1	103.62	103.12	104.12	0								0	0	0	0.16354	1	38052	38052		0.30703	0.30703	1		+		37576	26065	27494	27724	36604	36604					0.1492494213343889
NNWRRKRRWKR	11	Unmodified	_NNWRRKRRWKR_					0	0	0			REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF	REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	553.0569458007812	3	552.657452	1654.95053	-0.58823	-0.00032509	-0.78776	-0.00043536	-1.376	-0.00076045	552.9912415315324	142.55	0.45895	142.58	142.28	142.74	0.030746					15	8	2	0	0	0	0.73934	1	55787	55787		0	0	1	3167600	+		37577	26065	27494	27724	36605	36605					0.1492494213343889
NNWRRKRRWKR	11	Unmodified	_NNWRRKRRWKR_					0	0	0			REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF	REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	552.729248046875	3	552.657452	1654.95053	-0.58823	-0.00032509	-0.78776	-0.00043536	-1.376	-0.00076045	552.9912415315324	142.55	0.45895	142.58	142.28	142.74	0.030746					15	8	2	0	0	0	1.0015	1	55684	55684		0	0	1	3167600	+		37578	26065	27494	27724	36606	36606					0.1492494213343889
NNWRRKRRWKR	11	Unmodified	_NNWRRKRRWKR_					0	0	0			REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF	REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	552.657452	1654.95053	-0.90366	-0.00049942	-1.0077	-0.00055691	-1.9114	-0.0010563	552.6568089912981	142.54	0.55432	142.54	142.18	142.74	0	-0.02187	-0.00014381	NaN	0	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3090700	+		37579	26065	27494	27724							0.1492494213343889
NPAIAVALP	9	Unmodified	_NPAIAVALP_					0	0	0		ENSG00000182162|ENST00000381297|P2RY8	ENSG00000182162|ENST00000381297|P2RY8	ENSG00000182162|ENST00000381297|P2RY8	MULTI-MSMS	A375_MHC_IP_R2	2	866.8031616210938	1	865.51418	864.506903	-0.60095	-0.00052013	-0.32111	-0.00027792	-0.92206	-0.00079805	865.5137826508081	82.779	0.55464	83.522	83.246	83.8	0.74293					20	10	2	0	0	0	0.35581	1	31440	31440		26.884	2.2098	1	3272900			37580	8381	27495	27725	36607	36607					0.06922990248415317
NPAIAVALP	9	Unmodified	_NPAIAVALP_					0	0	0		ENSG00000182162|ENST00000381297|P2RY8	ENSG00000182162|ENST00000381297|P2RY8	ENSG00000182162|ENST00000381297|P2RY8	MULTI-MATCH	A375_MHC_IP_R1	1		1	865.51418	864.506903	-0.35155	-0.00030427	-0.12144	-0.00010511	-0.47299	-0.00040938	865.5139787720934	83.595	0.60915	83.595	83.277	83.887	0	0.036344	7.7879E-05	NaN	26.884	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3905300			37581	8381	27495	27725							0.06922990248415317
NPDHYRKF	8	Unmodified	_NPDHYRKF_					0	0	0			REV__ENSG00000102974|ENST00000264010|CTCF	REV__ENSG00000102974|ENST00000264010|CTCF	MULTI-MSMS	A375_MHC_IP_R1	1	359.4283447265625	3	359.513919	1075.51993	0.015986	5.7472E-06	-0.5376	-0.00019327	-0.52161	-0.00018753	359.5136355100357	27.241	0.4048	27.241	27.078	27.482	0					12	7	2	0	0	0	0.77624	1	8330	8330		6.2058	6.2058	1	2411100	+		37582	17242	27496	27726	36608	36608					-0.014811786394830051
NPDIWYEGSQK	11	Unmodified	_NPDIWYEGSQK_					0	0	0			REV__ENSG00000204262|ENST00000374866|COL5A2	REV__ENSG00000204262|ENST00000374866|COL5A2	MSMS	A375_MHC_IP_R2	2	668.8062744140625	2	668.812042	1335.60953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.664	1	95.409	94.909	95.909	0.74474								0	0	0	0.16273	1	35970	35970		4.5289	1.2476	1		+		37583	22501	27497	27727	36609	36609					-0.0448501354144355
NPDIYEENLH	10	Unmodified	_NPDIYEENLH_					0	0	0		ENSG00000143919|ENST00000378494|CAMKMT	ENSG00000143919|ENST00000378494|CAMKMT	ENSG00000143919|ENST00000378494|CAMKMT	MULTI-MSMS	A375_MHC_IP_R2	2	415.43658447265625	3	415.19117	1242.55168	-0.34046	-0.00014136	0.82605	0.00034297	0.48558	0.00020161	415.1915384216314	21.204	0.86098	21.824	21.017	21.878	0.61932					24	16	2	0	0	0	0.72422	1	6453	6453		1.4551	0	1	2143400			37584	5446	27498	27728	36610	36610					-0.05989275466845356
NPDNNKMQYI	10	Unmodified	_NPDNNKMQYI_					0	0	0			REV__ADAM18|p.S528Tfs*2|1|0.02|ENSG00000168619|chr8:39677466-39677467|-/TTAATTCTCTGCATGAAAGAAC|frameshift_variant	REV__ADAM18|p.S528Tfs*2|1|0.02|ENSG00000168619|chr8:39677466-39677467|-/TTAATTCTCTGCATGAAAGAAC|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	619.186767578125	2	618.787512	1235.56047	-0.64943	-0.00040186	-0.054516	-3.3734E-05	-0.70395	-0.00043559	618.7871815041804	78.277	0.60921	79.02	78.676	79.285	0.74293					17	9	2	0	0	0	0.6502	1	29731	29731		17.113	1.2657	1	2579300	+		37585	15311	27499	27729	36611	36611					-0.04788625102014521
NPDTALLQQM	10	Unmodified	_NPDTALLQQM_					0	0	0			REV__ENST00000482519.1_1_1:171675557-171707554:-|nuORF	REV__ENST00000482519.1_1_1:171675557-171707554:-|nuORF	MSMS	A375_MHC_IP_R1	1	565.7053833007812	2	565.779156	1129.54376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.385	1	70.385	69.885	70.885	0								0	0	0	0.15136	1	25555	25555		15.248	0.41021	1		+		37586	25283	27500	27730	36612	36612					-0.015831259879860227
NPFVKIGDP	9	Unmodified	_NPFVKIGDP_					0	0	0			REV__ENSG00000108106|ENST00000264552|UBE2S	REV__ENSG00000108106|ENST00000264552|UBE2S	MSMS	A375_MHC_IP_R2	2	493.6871337890625	2	493.768917	985.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.917	1	68.652	68.152	69.152	0.73511								0	0	0	0.14767	1	25738	25738		25.399	4.5281	1		+		37587	17516	27501	27731	36613	36613					0.0299407141451411
NPHKKDLF	8	Unmodified	_NPHKKDLF_					0	0	0			REV__ENST00000458118.5_1_13:41428885-41438465:-|nuORF	REV__ENST00000458118.5_1_13:41428885-41438465:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	499.6951904296875	2	499.774534	997.534515	-0.18398	-9.195E-05	1.6887	0.00084396	1.5047	0.00075201	500.27776460429936	71.59	0.45168	71.59	71.313	71.765	0					10	8	2	0	0	0	0.76248	1	26044	26044		16.942	1.0951	1	1291900	+		37588	24947	27502	27732	36614	36614					0.03564893508666955
NPHPVATF	8	Unmodified	_NPHPVATF_					0	0	0			REV__ENST00000527623.1_1_19:46891683-46893600:+|nuORF	REV__ENST00000527623.1_1_19:46891683-46893600:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	441.6578063964844	2	441.727052	881.439552	-0.17284	-7.635E-05	-0.059083	-2.6099E-05	-0.23193	-0.00010245	441.726995845429	47.425	0.61179	48.186	47.766	48.378	0.76127					18	11	2	0	0	0	0.73946	1	17740	17740		23.148	3.7094	1	972030	+		37589	16213	27503	27733	36615	36615					-0.005910399625349783
NPHYIKTTF	9	Unmodified	_NPHYIKTTF_					0	0	0			REV__ENSG00000156587|ENST00000287156|UBE2L6	REV__ENSG00000156587|ENST00000287156|UBE2L6	MULTI-SECPEP	A375_MHC_IP_R1	1	374.59674072265625	3	374.197708	1119.57129	0.10412	3.8962E-05	-1.2405	-0.00046419	-1.1364	-0.00042522	374.196247847373	30.898	0.60761	30.898	30.603	31.211	0					32	11	4	0	0	0	0.77396	1	9849	9849		6.6304	2.754	1	2612100	+		37590	19990	27504	27734	36616	36616					0.01629145334572968
NPINKSTG	8	Unmodified	_NPINKSTG_					0	0	0			REV__L1P2_dup1208|chr11:88107546-88109129:-|1.8698902225432863|0.3715451182625647|2.33|469.0|5|1|sense	REV__L1P2_dup1208|chr11:88107546-88109129:-|1.8698902225432863|0.3715451182625647|2.33|469.0|5|1|sense	MULTI-MSMS	A375_MHC_IP_R1	1	830.2286376953125	1	830.436658	829.429381	-0.34685	-0.00028804	-0.75965	-0.00063084	-1.1065	-0.00091888	830.4363716121969	100.25	0.65889	100.25	100.03	100.69	0					20	12	2	0	0	0	0.77624	1	36916	36916		8.5933	0.68312	1	5633100	+		37591	26889	27505	27735	36617	36617					0.007843523122346596
NPINKSTG	8	Unmodified	_NPINKSTG_					0	0	0			REV__L1P2_dup1208|chr11:88107546-88109129:-|1.8698902225432863|0.3715451182625647|2.33|469.0|5|1|sense	REV__L1P2_dup1208|chr11:88107546-88109129:-|1.8698902225432863|0.3715451182625647|2.33|469.0|5|1|sense	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	830.436658	829.429381	-0.34685	-0.00028804	-0.75965	-0.00063084	-1.1065	-0.00091888	830.4363716121969	100.25	0.65889	100.25	100.03	100.69	0	0.037063	0.0001579	NaN	8.5933	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5633100	+		37592	26889	27505	27735							0.007843523122346596
NPINKSTG	8	Unmodified	_NPINKSTG_					0	0	0			REV__L1P2_dup1208|chr11:88107546-88109129:-|1.8698902225432863|0.3715451182625647|2.33|469.0|5|1|sense	REV__L1P2_dup1208|chr11:88107546-88109129:-|1.8698902225432863|0.3715451182625647|2.33|469.0|5|1|sense	MULTI-MATCH	A375_MHC_IP_R2	2		1	830.436658	829.429381	-0.55536	-0.00046119	-1.0579	-0.00087856	-1.6133	-0.0013397	830.4359655623452	99.42	0.61167	100.18	99.909	100.52	0.75977	-0.037063	-8.9817E-05	NaN	8.5933	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3211800	+		37593	26889	27505	27735							0.007843523122346596
NPIRPARL	8	Unmodified	_NPIRPARL_					0	0	0			REV__ENST00000585201.5_1_18:74696670-74697120:-|nuORF	REV__ENST00000585201.5_1_18:74696670-74697120:-|nuORF	MSMS	A375_MHC_IP_R2	2	468.6868896484375	2	468.790518	935.566484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.428	1	62.173	61.673	62.673	0.74503								0	0	0	0.16876	1	23282	23282		14.582	1.0738	1		+		37594	26376	27506	27736	36618	36618					0.09612305982454927
NPKIQKEQELY	11	Unmodified	_NPKIQKEQELY_					0	0	0			REV__MLH3|p.H1408Y|1|0.29|ENSG00000119684|chr14:75018849-75018849|G/A|missense_variant	REV__MLH3|p.H1408Y|1|0.29|ENSG00000119684|chr14:75018849-75018849|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	695.77197265625	2	695.372266	1388.72998	-0.80707	-0.00056121	0.048518	3.3738E-05	-0.75855	-0.00052748	695.3722523839199	62.462	0.50974	63.205	62.824	63.333	0.74263					14	9	2	0	0	0	0.72585	1	23708	23708		16.149	0	1	1897200	+		37595	27018	27507	27737	36619	36619					0.051163944522159
NPLMKKVF	8	Unmodified	_NPLMKKVF_					0	0	0		nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;ENSG00000147251|ENST00000276202|DOCK11	nc|ENSG00000088387|Q9BZ29-3|DOCK9;ENSG00000147251|ENST00000276202|DOCK11	nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-MSMS	A375_MHC_IP_R1	1	488.6846008300781	2	488.786056	975.557558	0.29659	0.00014497	-0.23476	-0.00011475	0.061836	3.0225E-05	488.78593870002237	44.853	0.60837	44.853	44.575	45.183	0					28	11	3	0	0	0	0.77515	1	15615	15615		12.532	1.4171	1	21535000			37596	1892;5673	27508	27738	36620	36620					0.06880196301779051
NPLSATIFAQE	11	Unmodified	_NPLSATIFAQE_					0	0	0			REV__ENSG00000011028|ENST00000303375|MRC2	REV__ENSG00000011028|ENST00000303375|MRC2	MSMS	A375_MHC_IP_R2	2	595.7261962890625	2	595.806228	1189.5979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.57	1	58.319	57.819	58.819	0.74894								0	0	0	0.15837	1	21771	21771		15.248	4.449	1		+		37597	16201	27509	27739	36621	36621					0.010687894352258809
NPLTLELVY	9	Unmodified	_NPLTLELVY_					0	0	0			REV__ENSG00000066739|ENST00000359933|ATG2B	REV__ENSG00000066739|ENST00000359933|ATG2B	MSMS	A375_MHC_IP_R2	2	531.2085571289062	2	531.297507	1060.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.67	1	125.96	125.46	126.46	0.2951								0	0	0	0.15486	1	49086	49086		10.824	3.215	1		+		37598	16523	27510	27740	36622	36622					0.05259493900234702
NPLTQTRK	8	Unmodified	_NPLTQTRK_					0	0	0			REV__ARHGAP25|p.R438C|1|0.13|ENSG00000163219|chr2:68822451-68822451|C/T|missense_variant	REV__ARHGAP25|p.R438C|1|0.13|ENSG00000163219|chr2:68822451-68822451|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	479.678466796875	2	479.277441	956.540328	-0.35571	-0.00017048	-0.25654	-0.00012295	-0.61225	-0.00029344	479.2771748898275	118.35	0.40498	118.35	118.02	118.42	0					13	7	2	0	0	0	0.77741	1	43443	43443		4.3292	0.38484	1	22319000	+		37599	15433	27511	27741	36623	36623					0.06031992020314192
NPLTRLRRRPL	11	Unmodified	_NPLTRLRRRPL_					0	0	0			REV__ENST00000562846.1_1_16:67595531-67595669:-|nuORF	REV__ENST00000562846.1_1_16:67595531-67595669:-|nuORF	MSMS	A375_MHC_IP_R2	2	696.48388671875	2	696.438944	1390.86333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.31	1	111.05	110.55	111.55	0.73692								0	0	0	0.16316	1	41614	41614		2.2828	0.80087	1		+		37600	26194	27512	27742	36624	36624					0.1835372313919379
NPLYKSAITT	10	Unmodified	_NPLYKSAITT_					0	0	0		ENSG00000139626|ENST00000267082|ITGB7;nc|ENSG00000139626|P26010-2|ITGB7;ENST00000551319.5_1_12:53585342-53585652:-|nuORF	ENSG00000139626|ENST00000267082|ITGB7	ENSG00000139626|ENST00000267082|ITGB7	MULTI-MSMS	A375_MHC_IP_R1	1	370.27349853515625	3	369.873001	1106.59717	-0.010083	-3.7296E-06	0.17722	6.5548E-05	0.16713	6.1818E-05	369.8730367813918	41.286	0.9185	41.286	41.013	41.932	0					26	17	3	0	0	0	0.66857	1	14271	14271		15.739	7.2943	1	3101200			37601	5093	27513	27743	36625	36625					0.048139947861727705
NPPTRKFPL	9	Unmodified	_NPPTRKFPL_					0	0	0			REV__ENSG00000112234|ENST00000369244|FBXL4	REV__ENSG00000112234|ENST00000369244|FBXL4	MULTI-SECPEP	A375_MHC_IP_R1	1	534.65380859375	2	535.311284	1068.60801	-0.82017	-0.00043904	0.75009	0.00040153	-0.070074	-3.7512E-05	535.3116902085864	41.895	0.30643	41.895	41.725	42.032	0					9	5	2	0	0	0	0.76187	1	14447	14447		7.2892	0	1	1384900	+		37602	17717	27514	27744	36626	36626					0.07645441951149223
NPRRSPTHEK	10	Unmodified	_NPRRSPTHEK_					0	0	0		nc|ENSG00000197430|Q96PE5-3|OPALIN;nc|ENSG00000197430|Q96PE5-4|OPALIN;nc|ENSG00000197430|Q96PE5-2|OPALIN;ENSG00000197430|ENST00000371172|OPALIN	nc|ENSG00000197430|Q96PE5-3|OPALIN	nc|ENSG00000197430|Q96PE5-3|OPALIN	MULTI-MSMS	A375_MHC_IP_R2	2	611.7257690429688	2	611.325985	1220.63742	-0.56229	-0.00034374	-0.67359	-0.00041178	-1.2359	-0.00075552	611.3255594599718	128.81	1.2145	129.05	128.6	129.82	0.23947					65	23	4	0	0	0	0.72078	1	50818	50818		2.9952	2.9952	1	19666000			37603	9158	27515	27745	36627	36627					0.03592354229317607
NPRYFWCGYLW	11	Unmodified	_NPRYFWCGYLW_					0	0	0			REV__PBRM1|p.E1214Rfs*6|1|0.21|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant	REV__PBRM1|p.E1214Rfs*6|1|0.21|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant	MSMS	A375_MHC_IP_R1	1	752.9413452148438	2	752.845165	1503.67578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.34	1	115.34	114.84	115.84	0								0	0	0	0.16297	1	42298	42298		3.2813	0.28607	1		+		37604	20428	27516	27746	36628	36628					-0.055914761803705915
NPSDPPSQPD	10	Unmodified	_NPSDPPSQPD_					0	0	0			REV__GRIA3|p.P599S|1|0.55|ENSG00000125675|chrX:123417696-123417696|C/T|missense_variant	REV__GRIA3|p.P599S|1|0.55|ENSG00000125675|chrX:123417696-123417696|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	1054.4859619140625	1	1053.44834	1052.44107	0.62781	0.00066137	-1.2975	-0.0013668	-0.66964	-0.00070543	1054.4493792497726	114.34	0.65916	114.34	114.26	114.92	0					14	12	2	0	0	0	0.71944	1	42111	42111		3.5965	0.31518	1	10804000	+		37605	26707	27517	27747	36629	36629					-0.08305495455101664
NPSPYHLYY	9	Unmodified	_NPSPYHLYY_					0	0	0		ENSG00000020633|ENST00000308873|RUNX3;nc|ENSG00000020633|Q13761-2|RUNX3	ENSG00000020633|ENST00000308873|RUNX3	ENSG00000020633|ENST00000308873|RUNX3	MULTI-MSMS	A375_MHC_IP_R1	1	577.742919921875	2	577.269281	1152.52401	-0.055765	-3.2191E-05	0.0090403	5.2187E-06	-0.046724	-2.6973E-05	577.2692136275327	79.118	1.7854	79.118	78.756	80.541	0					81	34	4	0	0	0	0.27715	1	29022	29022		32.305	0	1	69763000			37606	1059	27518	27748	36630	36630					-0.046151339364541855
NPTSAVNVA	9	Unmodified	_NPTSAVNVA_					0	0	0		ENST00000298299.3_1_10:45499300-45499360:+|nuORF	ENST00000298299.3_1_10:45499300-45499360:+|nuORF	ENST00000298299.3_1_10:45499300-45499360:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	437.1270751953125	2	436.727249	871.439946	-0.52678	-0.00023006	0.093791	4.0961E-05	-0.43299	-0.0001891	436.7272002067899	34.382	0.45827	35.134	35.006	35.464	0.75225					14	8	2	0	0	0	0.22528	1	12432	12432		36.127	0.082828	1	2350300			37607	10522	27519	27749	36631	36631					-0.0009166503333517539
NPTSAVNVA	9	Unmodified	_NPTSAVNVA_					0	0	0		ENST00000298299.3_1_10:45499300-45499360:+|nuORF	ENST00000298299.3_1_10:45499300-45499360:+|nuORF	ENST00000298299.3_1_10:45499300-45499360:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	436.727249	871.439946	-0.052228	-2.2809E-05	0.11387	4.973E-05	0.06164	2.692E-05	436.7272049516678	35.155	0.66134	35.155	34.912	35.573	0	0.010417	7.4745E-06	NaN	36.127	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2147800			37608	10522	27519	27749							-0.0009166503333517539
NPTVLELRSFT	11	Unmodified	_NPTVLELRSFT_					0	0	0		FREM1|p.A715V|1|0.94|ENSG00000164946|chr9:14824050-14824050|G/A|missense_variant	FREM1|p.A715V|1|0.94|ENSG00000164946|chr9:14824050-14824050|G/A|missense_variant	FREM1|p.A715V|1|0.94|ENSG00000164946|chr9:14824050-14824050|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	638.7943115234375	2	638.848427	1275.6823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.47	1	108.47	107.97	108.97	0								0	0	0	0.15183	1	39790	39790		19.362	3.2128	1				37609	14015	27520	27750	36632	36632					0.0554874025197023
NPVAYYLHH	9	Unmodified	_NPVAYYLHH_					0	0	0		nc|ENSG00000103227|Q96S06-2|LMF1;ENSG00000103227|ENST00000262301|LMF1	nc|ENSG00000103227|Q96S06-2|LMF1	nc|ENSG00000103227|Q96S06-2|LMF1	MULTI-MSMS	A375_MHC_IP_R2	2	558.1744384765625	2	557.277441	1112.54033	-0.70962	-0.00039545	0.96565	0.00053814	0.25604	0.00014268	557.2796152997352	64.556	1.4251	65.296	64.749	66.174	0.74023					58	27	4	0	0	0	0.40079	1	24551	24551		24.674	5.4169	1	6567600			37610	2433	27521	27751	36633	36633					-0.01144007979678463
NPVEHPFG	8	Unmodified	_NPVEHPFG_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-SECPEP	A375_MHC_IP_R2	2	449.1164855957031	2	448.716685	895.418816	-0.48338	-0.0002169	0.10157	4.5575E-05	-0.38181	-0.00017133	448.7166995602365	35.849	0.45839	36.612	36.384	36.842	0.76338					16	8	2	0	0	0	0.86765	1	13018	13018		24.674	0	1	4945300			37611	6459	27522	27752	36634	36634					-0.03307630342192169
NPVSPEHWP	9	Unmodified	_NPVSPEHWP_					0	0	0		ENST00000576789.1_3_19:7427669-7440673:+|nuORF	ENST00000576789.1_3_19:7427669-7440673:+|nuORF	ENST00000576789.1_3_19:7427669-7440673:+|nuORF	MSMS	A375_MHC_IP_R1	1	531.666259765625	2	531.753798	1061.49304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.762	1	28.762	28.262	29.262	0								0	0	0	0.14851	1	8916	8916		24.021	3.5669	1				37612	13643	27523	27753	36635	36635					-0.03524287250661473
NPYRYPEIK	9	Unmodified	_NPYRYPEIK_					0	0	0		SCNN1A|p.E146K|1|0.1|ENSG00000111319|chr12:6363691-6363691|C/T|missense_variant;nc|ENSG00000111319|P37088-3|SCNN1A;nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A	SCNN1A|p.E146K|1|0.1|ENSG00000111319|chr12:6363691-6363691|C/T|missense_variant	SCNN1A|p.E146K|1|0.1|ENSG00000111319|chr12:6363691-6363691|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	394.2769470214844	3	393.876746	1178.60841	0.035155	1.3847E-05	0.14786	5.824E-05	0.18302	7.2086E-05	393.8767546969167	60.385	0.40646	60.385	60.159	60.566	0					18	7	4	0	0	0	0.7911	1	21752	21752		2.2828	1.5851	1	1785500			37613	2983	27524	27754	36636	36636					0.026248168803022054
NPYVIEKLK	9	Unmodified	_NPYVIEKLK_					0	0	0			REV__nc|ENSG00000087053|Q13614-2|MTMR2	REV__nc|ENSG00000087053|Q13614-2|MTMR2	MULTI-SECPEP	A375_MHC_IP_R1	1	367.96063232421875	3	368.553492	1102.63865	0.14875	5.4823E-05	0.97289	0.00035856	1.1216	0.00041339	368.553711316566	19.495	0.45714	19.495	19.268	19.725	0					11	8	2	0	0	0	0.47368	1	4882	4882		19.362	0	1	1780900	+		37614	16861	27525	27755	36637	36637					0.09143175545523263
NQCPGCWPAY	10	Unmodified	_NQCPGCWPAY_					0	0	0			REV__nc|ENSG00000077232|Q8IXB1-2|DNAJC10	REV__nc|ENSG00000077232|Q8IXB1-2|DNAJC10	MULTI-SECPEP	A375_MHC_IP_R1	1	570.1256103515625	2	569.725869	1137.43719	-0.27676	-0.00015768	-0.43482	-0.00024773	-0.71158	-0.00040541	569.7256278881266	103.59	0.96565	103.59	103.12	104.08	0					38	18	4	0	0	0	0.83086	1	38033	38033		21.747	8.7042	1	5035800	+		37615	16690	27526	27756	36638	36638					-0.12603579754159
NQCPGCWPAY	10	Unmodified	_NQCPGCWPAY_					0	0	0			REV__nc|ENSG00000077232|Q8IXB1-2|DNAJC10	REV__nc|ENSG00000077232|Q8IXB1-2|DNAJC10	MULTI-SECPEP	A375_MHC_IP_R2	2	570.1259155273438	2	569.725869	1137.43719	-0.31715	-0.00018069	-0.55648	-0.00031704	-0.87362	-0.00049773	569.7256113047536	102.72	1.0179	103.48	103.12	104.14	0.76428					41	19	3	0	0	0	0.83086	1	38906	38906		21.747	8.7042	1	4334800	+		37616	16690	27526	27756	36639	36639					-0.12603579754159
NQDFDKQY	8	Unmodified	_NQDFDKQY_					0	0	0			REV__ENST00000409283.6_1_2:158594076-158594967:-|nuORF	REV__ENST00000409283.6_1_2:158594076-158594967:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	529.1708374023438	2	529.232896	1056.45124	-0.56615	-0.00029962	0.18869	9.9861E-05	-0.37746	-0.00019976	529.233033557888	62.756	0.3514	63.499	63.333	63.685	0.74263					9	6	2	0	0	0	0.77123	1	23777	23777		14.582	0	1	964560	+		37617	24465	27527	27757	36640	36640					-0.07472887729841204
NQDRIQLW	8	Unmodified	_NQDRIQLW_					0	0	0			REV__ENST00000432560.6_1_22:29763228-29784426:-|nuORF	REV__ENST00000432560.6_1_22:29763228-29784426:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	536.6965942382812	2	536.780348	1071.54614	-1.0559	-0.00056679	0.023591	1.2663E-05	-1.0323	-0.00055413	536.7804119776745	51.362	0.45654	52.114	51.864	52.321	0.75225					16	8	3	0	0	0	0.84748	1	19344	19344		36.044	3.7387	1	3497100	+		37618	24717	27528	27758	36641	36641					0.01323090531991511
NQFFSHLFQ	9	Unmodified	_NQFFSHLFQ_					0	0	0			REV__ENST00000328902.9_1_7:150324506-150324674:-|nuORF	REV__ENST00000328902.9_1_7:150324506-150324674:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	585.2031860351562	2	584.282723	1166.55089	-0.81473	-0.00047603	-1.7385	-0.0010158	-2.5532	-0.0014918	584.2814485834996	37.426	0.45983	38.197	38.07	38.53	0.7709					14	8	3	0	0	0	0.65721	1	13775	13775		10.824	1.4408	1	3015300	+		37619	23612	27529	27759	36642	36642					-0.0257202532525298
NQFITPQKQY	10	Unmodified	_NQFITPQKQY_					0	0	0			REV__ENST00000599167.5_1_19:49999677-50000690:+|nuORF	REV__ENST00000599167.5_1_19:49999677-50000690:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	633.2117309570312	2	633.827495	1265.64044	-0.49574	-0.00031422	0.19968	0.00012656	-0.29606	-0.00018765	633.8276929641172	68.914	0.50642	68.914	68.666	69.173	0					16	9	2	0	0	0	0.85226	1	25049	25049		20.454	5.2051	1	3015100	+		37620	19312	27530	27760	36643	36643					0.01824184563452036
NQFLYNLKE	9	Unmodified	_NQFLYNLKE_					0	0	0		nc|ENSG00000131059|Q9BQP9-2|BPIFA3;ENSG00000131059|ENST00000375454|BPIFA3	nc|ENSG00000131059|Q9BQP9-2|BPIFA3	nc|ENSG00000131059|Q9BQP9-2|BPIFA3	MULTI-SECPEP	A375_MHC_IP_R1	1	390.6051025390625	3	390.204751	1167.59242	0.026645	1.0397E-05	0.80009	0.0003122	0.82673	0.00032259	390.20496342617736	38.474	0.81461	38.474	38.168	38.983	0					30	15	3	0	0	0	0.76106	1	13029	13029		13.615	0	1	9969100			37621	4306	27531	27761	36644	36644					0.01533110643413238
NQFNLFALD	9	Unmodified	_NQFNLFALD_					0	0	0			REV__ENST00000555629.1_1_14:35872865-35873850:-|nuORF	REV__ENST00000555629.1_1_14:35872865-35873850:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	541.6690673828125	2	541.269281	1080.52401	-0.56792	-0.0003074	0.52358	0.0002834	-0.044341	-2.4E-05	541.2694859091988	53.58	1.4691	53.58	52.946	54.415	0					72	28	4	0	0	0	0.12592	1	19222	19222		46.021	0	1	24582000	+		37622	17128	27532	27762	36645	36645					-0.01303133936426093
NQFNLFALD	9	Unmodified	_NQFNLFALD_					0	0	0			REV__ENST00000555629.1_1_14:35872865-35873850:-|nuORF	REV__ENST00000555629.1_1_14:35872865-35873850:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	540.7673950195312	2	541.269281	1080.52401	-1.3491	-0.00073025	0.45644	0.00024706	-0.8927	-0.00048319	541.2694413097923	52.871	1.3182	53.622	52.931	54.249	0.75105					71	25	4	0	0	0	0.16676	1	19907	19907		49.933	0	1	22165000	+		37623	17128	27532	27762	36646	36646					-0.01303133936426093
NQFNSFISV	9	Unmodified	_NQFNSFISV_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	A375_MHC_IP_R1	1	528.6609497070312	2	528.261456	1054.50836	-0.29697	-0.00015688	-0.34336	-0.00018139	-0.64034	-0.00033827	528.2611284624963	107.25	0.6143	107.25	106.98	107.6	0					28	11	3	0	0	0	0.010171	1	39319	39319		96.111	43.843	1	4088900			37624	4742	27533	27763	36647	36647					-0.016714204534764576
NQFNSFISV	9	Unmodified	_NQFNSFISV_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	A375_MHC_IP_R2	2	528.6610717773438	2	528.261456	1054.50836	-0.56667	-0.00029935	-0.20367	-0.00010759	-0.77034	-0.00040694	528.2611551307335	106.48	0.71279	107.24	106.88	107.6	0.75977					26	13	3	0	0	0	0.0070829	1	40206	40206		131.27	60.134	1	4175600			37625	4742	27533	27763	36648	36648					-0.016714204534764576
NQFPGFKEV	9	Unmodified	_NQFPGFKEV_					0	0	0		ENSG00000125870|ENST00000246071|SNRPB2;ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000077312|ENST00000243563|SNRPA	ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	MULTI-MSMS	A375_MHC_IP_R1	1	533.7127075195312	2	533.271824	1064.5291	-0.64208	-0.0003424	-0.11243	-5.9956E-05	-0.75451	-0.00040236	533.2718537763617	61.661	4.3893	61.661	61.176	65.565	0					222	85	5	0	0	0	0.0042961	6	22192	22192;22365;22590;22673;23046;23177		136.39	76.003	1	1146700000			37626	4002	27534	27764	36649;36650;36651;36652;36653;36654	36649					-0.0005883007379452465
NQFPGFKEV	9	Unmodified	_NQFPGFKEV_					0	0	0		ENSG00000125870|ENST00000246071|SNRPB2;ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000077312|ENST00000243563|SNRPA	ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	MULTI-MSMS	A375_MHC_IP_R2	2	533.7124633789062	2	533.271824	1064.5291	-1.0382	-0.00055362	-0.24839	-0.00013246	-1.2865	-0.00068608	533.2717550745982	60.898	3.8493	61.643	61.006	64.855	0.74503					209	75	5	0	0	0	0.0042961	5	22996	22951;22996;23191;23921;23962		136.39	76.003	1	1052299999.9999999			37627	4002	27534	27764	36655;36656;36657;36658;36659	36656					-0.0005883007379452465
NQFSGMCQV	9	Unmodified	_NQFSGMCQV_					0	0	0			REV__DNAH5|p.D3154N|2|0.28|ENSG00000039139|chr5:13770894-13770894|C/T|missense_variant	REV__DNAH5|p.D3154N|2|0.28|ENSG00000039139|chr5:13770894-13770894|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	507.1641540527344	2	507.212595	1012.41064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.418	1	49.418	48.918	49.918	0								0	0	0	0.15486	1	17476	17476		12.532	0	1		+		37628	16010	27535	27765	36660	36660					-0.09507268645472777
NQGFDFDFF	9	Unmodified	_NQGFDFDFF_					0	0	0		MAPK6|p.S529F|1|0.18|ENSG00000069956|chr15:52064420-52064420|C/T|missense_variant	MAPK6|p.S529F|1|0.18|ENSG00000069956|chr15:52064420-52064420|C/T|missense_variant	MAPK6|p.S529F|1|0.18|ENSG00000069956|chr15:52064420-52064420|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	568.6500244140625	2	568.737814	1135.46108	-0.26627	-0.00015144	-1.0808	-0.00061472	-1.3471	-0.00076616	568.7375991637217	64.178	1.1201	64.919	64.139	65.259	0.74022					31	21	3	0	0	0	0.53367	1	24368	24368		18.146	0.011366	1	1131400			37629	14353	27536	27766	36661	36661					-0.10123699724476865
NQINVNKYPA	10	Unmodified	_NQINVNKYPA_					0	0	0			REV__nc|ENSG00000072110|P12814-2|ACTN1	REV__nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	A375_MHC_IP_R1	1	387.93182373046875	3	387.540134	1159.59857	0.46276	0.00017934	-0.62941	-0.00024392	-0.16665	-6.4585E-05	387.539968296127	21.415	0.50744	21.415	21.098	21.606	0					29	9	4	0	0	0	0.65751	1	5700	5700		16.566	7.0219	1	9500100	+		37630	16596	27537	27767	36662	36662					0.02515628874948561
NQKELAKQL	9	Unmodified	_NQKELAKQL_					0	0	0			REV__ENSG00000167202|ENST00000300584|TBC1D2B	REV__ENSG00000167202|ENST00000300584|TBC1D2B	MULTI-MSMS	A375_MHC_IP_R1	1	536.711669921875	2	536.31148	1070.60841	-0.95217	-0.00051066	0.50027	0.0002683	-0.4519	-0.00024236	536.3115850322725	132.21	1.5205	132.21	131.48	133	0					57	29	4	0	0	0	0.75032	1	50893	50893		1.8442	0	1	54445000	+		37631	20739	27538	27768	36663	36663					0.07592816880332975
NQLCQSWPV	9	Unmodified	_NQLCQSWPV_					0	0	0			REV__ENSG00000109046|ENST00000262394|WSB1	REV__ENSG00000109046|ENST00000262394|WSB1	MULTI-SECPEP	A375_MHC_IP_R1	1	537.2283325195312	2	537.755484	1073.49641	-1.0256	-0.0005515	0.32081	0.00017252	-0.70474	-0.00037898	537.7555775063774	67.44	0.40779	67.44	67.297	67.704	0					11	7	2	0	0	0	0.73363	1	24472	24472		1.4819	1.4819	1	1228700	+		37632	17566	27539	27769	36664	36664					-0.03739360468330233
NQLFSGLLRPY	11	Unmodified	_NQLFSGLLRPY_					0	0	0		ENSG00000162722|ENST00000366481|TRIM58	ENSG00000162722|ENST00000366481|TRIM58	ENSG00000162722|ENST00000366481|TRIM58	MSMS	A375_MHC_IP_R1	1	436.6417236328125	3	436.575067	1306.70337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.555	1	28.555	28.055	29.055	0								0	0	0	0.16249	1	8825	8825		4.7159	2.0847	1				37633	6581	27540	27770	36665	36665					0.062287503515108256
NQLKEQLC	8	Unmodified	_NQLKEQLC_					0	0	0		nc|ENSG00000100503|Q8N4C6-10|NIN;ENSG00000100503|ENST00000530997|NIN;ENST00000476352.5_1_14:51190183-51197646:-|nuORF	nc|ENSG00000100503|Q8N4C6-10|NIN	nc|ENSG00000100503|Q8N4C6-10|NIN	MSMS	A375_MHC_IP_R2	2	488.1925354003906	2	488.250034	974.485516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.9	1	30.599	30.099	31.099	0.69872								0	0	0	0.16876	1	10477	10477		21.747	2.4897	1				37634	2186	27541	27771	36666	36666					-0.0027476284261638284
NQLRMELEAR	10	Unmodified	_NQLRMELEAR_					0	0	0			REV__nc|ENSG00000137497|Q14980-4|NUMA1	REV__nc|ENSG00000137497|Q14980-4|NUMA1	MULTI-MSMS	A375_MHC_IP_R2	2	630.7286987304688	2	630.329879	1258.6452	-0.83558	-0.00052669	0.11238	7.0837E-05	-0.7232	-0.00045585	630.3298709189208	129.95	1.3659	130.16	129.54	130.91	0.2142					57	26	3	0	0	0	0.60608	1	51199	51199		20.415	4.5674	1	14576000	+		37635	19013	27542	27772	36667	36667					0.02622745434564422
NQLRMELEAR	10	Unmodified	_NQLRMELEAR_					0	0	0			REV__nc|ENSG00000137497|Q14980-4|NUMA1	REV__nc|ENSG00000137497|Q14980-4|NUMA1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	630.329879	1258.6452	-0.83938	-0.00052909	0.3556	0.00022414	-0.48378	-0.00030494	630.3297825223409	130.08	1.2695	130.08	129.55	130.82	0	-0.038848	0.00023064	NaN	20.415	40	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19170000	+		37636	19013	27542	27772							0.02622745434564422
NQLSEVANK	9	Unmodified	_NQLSEVANK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1;ENST00000476468.5_2_10:103912191-103916993:+|nuORF	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-SECPEP	A375_MHC_IP_R1	1	501.6392517089844	2	501.764363	1001.51417	-0.4534	-0.0002275	-0.17906	-8.9846E-05	-0.63246	-0.00031735	501.7641352279111	27.429	0.70651	27.429	27.28	27.987	0					20	13	3	0	0	0	0.73008	1	8376	8376		17.113	0	1	4146600			37637	7040	27543	27773	36668	36668					0.013476780581868297
NQLSEVANK	9	Unmodified	_NQLSEVANK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1;ENST00000476468.5_2_10:103912191-103916993:+|nuORF	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-SECPEP	A375_MHC_IP_R2	2	501.70269775390625	2	501.764363	1001.51417	-0.85596	-0.00042949	0.2245	0.00011265	-0.63146	-0.00031684	501.7643623136575	26.831	0.46053	27.491	27.262	27.722	0.65992					13	8	2	0	0	0	0.65527	1	9107	9107		22.736	14.143	1	6134700			37638	7040	27543	27773	36669	36669					0.013476780581868297
NQMPTQPQV	9	Unmodified	_NQMPTQPQV_					0	0	0		ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-SECPEP	A375_MHC_IP_R1	1	522.1527709960938	2	521.752941	1041.49133	-0.5048	-0.00026338	0.15772	8.2289E-05	-0.34709	-0.00018109	521.7529674137188	43.844	0.66252	43.844	43.502	44.165	0					25	12	3	0	0	0	0.070665	1	15250	15250		78.728	50.241	1	3662000			37639	2172	27544	27774	36670	36670					-0.02775664330943073
NQMPTQPQV	9	Unmodified	_NQMPTQPQV_					0	0	0		ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-SECPEP	A375_MHC_IP_R2	2	522.1526489257812	2	521.752941	1041.49133	-0.49086	-0.00025611	-0.53048	-0.00027678	-1.0213	-0.00053289	521.7526898135045	43.135	0.55706	43.907	43.623	44.181	0.7724					25	10	3	0	0	0	0.05021	1	16061	16061		88.954	67.207	1	5618300			37640	2172	27544	27774	36671	36671					-0.02775664330943073
NQMPTQPQV	9	Oxidation (M)	_NQM(Oxidation (M))PTQPQV_		NQM(1)PTQPQV		NQM(60)PTQPQV	0	0	1		ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-SECPEP	A375_MHC_IP_R2	2	530.149169921875	2	529.750398	1057.48624	-1.3845	-0.00073342	-0.15813	-8.377E-05	-1.5426	-0.00081719	529.7500944939546	28.951	0.75026	29.649	29.384	30.134	0.69872					19	14	2	0	0	0	0.070665	1	10148	10148		60.074	45.236	1	13789000			37641	2172	27544	27775	36672	36672		85			-0.04019968193551904
NQNFLEGFF	9	Unmodified	_NQNFLEGFF_					0	0	0			REV__nc|ENSG00000175040|Q9Y4C5-2|CHST2	REV__nc|ENSG00000175040|Q9Y4C5-2|CHST2	MULTI-MSMS	A375_MHC_IP_R1	1	558.6611938476562	2	558.261456	1114.50836	-0.51905	-0.00028976	0.88433	0.00049369	0.36528	0.00020392	558.2621827064945	75.422	1.3605	75.422	75.06	76.421	0					38	25	3	0	0	0	0.4867	1	27451	27451		20.454	0	1	6650800	+		37642	21319	27545	27776	36673	36673					-0.04431420453465762
NQPNKEFA	8	Unmodified	_NQPNKEFA_					0	0	0			REV__nc|ENSG00000133858|O60293-2|ZFC3H1	REV__nc|ENSG00000133858|O60293-2|ZFC3H1	MULTI-SECPEP	A375_MHC_IP_R1	1	474.15081787109375	2	474.232699	946.450845	-0.454	-0.0002153	-0.24072	-0.00011416	-0.69473	-0.00032946	474.2324728773741	34.812	0.96524	34.812	34.353	35.319	0					38	18	3	0	0	0	0.91495	1	11420	11420		12.532	12.532	1	20108000	+		37643	18737	27546	27777	36674	36674					-0.0245226265905103
NQQMYRFL	8	Unmodified	_NQQMYRFL_					0	0	0			REV__ENSG00000168612|ENST00000372523|ZSWIM1	REV__ENSG00000168612|ENST00000372523|ZSWIM1	MULTI-SECPEP	A375_MHC_IP_R2	2	549.6082763671875	2	550.271301	1098.52805	-0.78542	-0.0004322	-2.3962	-0.0013186	-3.1817	-0.0017508	550.2698803117178	82.753	0.45171	83.496	83.297	83.749	0.74293					12	8	2	0	0	0	0.972	1	31534	31534		5.2307	0	1	795260	+		37644	20871	27547	27778	36675	36675					-0.017273677143521127
NQQPRLTKL	9	Unmodified	_NQQPRLTKL_					0	0	0		nc|ENSG00000062194|Q86WP2-4|GPBP1;ENSG00000062194|ENST00000506184|GPBP1;nc|ENSG00000062194|Q86WP2-2|GPBP1	nc|ENSG00000062194|Q86WP2-4|GPBP1	nc|ENSG00000062194|Q86WP2-4|GPBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	367.2962646484375	3	366.552374	1096.63529	0.2912	0.00010674	0.092214	3.3801E-05	0.38341	0.00014054	366.55230629916736	31.642	0.66059	31.642	31.312	31.973	0					18	12	2	0	0	0	0.53748	1	10099	10099		17.443	3.8278	1	2812800			37645	1326	27548	27779	36676	36676					0.09083925491495393
NQRLLKVEILR	11	Unmodified	_NQRLLKVEILR_					0	0	0		MYF5|p.P119L|1|0.26|ENSG00000111049|chr12:80717419-80717419|C/T|missense_variant	MYF5|p.P119L|1|0.26|ENSG00000111049|chr12:80717419-80717419|C/T|missense_variant	MYF5|p.P119L|1|0.26|ENSG00000111049|chr12:80717419-80717419|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	691.4332885742188	2	691.435535	1380.85652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.349	1	36.349	35.849	36.849	0								0	0	0	0.16297	1	12161	12161		3.2813	1.7994	1				37646	14428	27549	27780	36677	36677					0.18132365467977252
NQRRRRWGRL	10	Unmodified	_NQRRRRWGRL_					0	0	0			REV__PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant	REV__PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	702.2877807617188	2	699.408509	1396.80247	-0.8505	-0.00059484	0.30807	0.00021547	-0.54242	-0.00037938	699.4086100765478	132.09	1.412	132.09	131.13	132.54	0					138	27	6	0	0	0	0.72416	1	51050	51050		1.4819	1.4819	1	263580000	+		37647	27837	27550	27781	36678	36678					0.11993630879624106
NQRRRRWGRL	10	Unmodified	_NQRRRRWGRL_					0	0	0			REV__PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant	REV__PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	699.408509	1396.80247	-0.8505	-0.00059484	0.30807	0.00021547	-0.54242	-0.00037938	699.4086100765478	132.09	1.412	132.09	131.13	132.54	0	-0.039819	-3.7682E-05	NaN	1.4819	138	27	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263580000	+		37648	27837	27550	27781							0.11993630879624106
NQRRRRWGRL	10	Unmodified	_NQRRRRWGRL_					0	0	0			REV__PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant	REV__PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	699.408509	1396.80247	-0.67459	-0.00047181	0.36129	0.00025269	-0.3133	-0.00021913	699.4086381434917	131.98	1.4228	132.17	131.19	132.61	0.18953	0.039819	3.6757E-05	NaN	1.4819	127	27	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	311880000	+		37649	27837	27550	27781							0.11993630879624106
NQRRRSHLEKL	11	Unmodified	_NQRRRSHLEKL_					0	0	0			REV__ENST00000501938.6_1_5:98105741-98105807:-|nuORF	REV__ENST00000501938.6_1_5:98105741-98105807:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	479.6846008300781	3	479.611285	1435.81203	-0.68156	-0.00032688	-0.2865	-0.00013741	-0.96806	-0.00046429	479.94536259816215	132.96	1.53	132.96	132.59	134.12	0					74	29	4	0	0	0	0.73647	1	51151	51151		1.1098	0	1	20628000	+		37650	25494	27551	27782	36679	36679					0.1115535437447761
NQRRVRPPKR	10	Unmodified	_NQRRVRPPKR_					0	0	0			REV__ENST00000369683.5_2_10:111667506-111683236:-|nuORF	REV__ENST00000369683.5_2_10:111667506-111683236:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	654.3005981445312	2	653.899986	1305.78542	-0.76776	-0.00050204	1.2819	0.00083823	0.51413	0.00033619	653.9006045298073	145.1	0.51895	145.1	144.82	145.34	0					21	15	2	0	0	0	0.95034	1	55596	55596		0.40072	0.1317	1	306220	+		37651	24012	27552	27783	36680	36680					0.14475710273814002
NQSDYTFIL	9	Unmodified	_NQSDYTFIL_					0	0	0			REV__tr|U7SM91|U7SM91_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01919PE=4SV=1	REV__tr|U7SM91|U7SM91_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01919PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	551.166015625	2	550.766571	1099.51859	-0.5275	-0.00029053	0.86947	0.00047887	0.34197	0.00018835	550.7666124393404	89.439	0.96114	89.439	88.97	89.931	0					42	18	4	0	0	0	0.16676	1	32805	32805		58.679	16.839	1	5876300	+		37652	28294	27553	27784	36681	36681					-0.027188575189029507
NQTEFERVF	9	Unmodified	_NQTEFERVF_					0	0	0		ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	ENSG00000136807|ENST00000373264|CDK9	ENSG00000136807|ENST00000373264|CDK9	MULTI-MSMS	A375_MHC_IP_R1	1	585.6832885742188	2	585.28292	1168.55129	-0.31912	-0.00018677	0.5568	0.00032588	0.23768	0.00013911	585.2832002961821	64.812	0.71047	64.812	64.495	65.206	0					33	13	3	0	0	0	0.0093069	1	23425	23425		173.69	127.67	1	12998000			37653	4817	27554	27785	36682	36682					-0.026246503960464906
NQTEFERVF	9	Unmodified	_NQTEFERVF_					0	0	0		ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	ENSG00000136807|ENST00000373264|CDK9	ENSG00000136807|ENST00000373264|CDK9	MULTI-MSMS	A375_MHC_IP_R2	2	585.6827392578125	2	585.28292	1168.55129	-0.4212	-0.00024652	0.6664	0.00039003	0.24519	0.00014351	585.2833934014317	64.053	1.0678	64.794	64.446	65.513	0.74022					33	20	2	0	0	0	0.0092755	1	24229	24229		103.82	72.555	1	12514000			37654	4817	27554	27785	36683	36683					-0.026246503960464906
NQTFSSDSD	9	Unmodified	_NQTFSSDSD_					0	0	0			REV__ENSG00000184675|ENST00000374869|AMER1	REV__ENSG00000184675|ENST00000374869|AMER1	MULTI-MSMS	A375_MHC_IP_R1	1	501.095703125	2	500.696343	999.378133	-0.35248	-0.00017649	-0.55919	-0.00027998	-0.91168	-0.00045647	500.69605397245385	59.69	0.76282	59.69	59.346	60.109	0					23	14	2	0	0	0	0.70307	2	21480	21480;21522		6.7232	0.51738	1	1977100	+		37655	21831	27555	27786	36684;36685	36684					-0.12158061243133034
NQTVTQLQQLL	11	Unmodified	_NQTVTQLQQLL_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1;ENST00000554831.1_1_14:56146303-56146414:+|nuORF	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MSMS	A375_MHC_IP_R2	2	643.3994750976562	2	643.359159	1284.70376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.447	1	51.201	50.701	51.701	0.75406								0	0	0	0.15694	1	18972	18972		16.149	6.6051	1				37656	4058	27556	27787	36686	36686					0.07280125280726679
NQVELLKKLKK	11	Unmodified	_NQVELLKKLKK_					0	0	0		tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1	tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1	tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1	MSMS	A375_MHC_IP_R1	1	670.6764526367188	2	670.934837	1339.85512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.76	1	94.76	94.26	95.26	0								0	0	0	0.16337	1	34829	34829		1.1933	0.12188	1				37657	29683	27557	27788	36687	36687					0.19878731379208148
NQWDGTQHGV	10	Unmodified	_NQWDGTQHGV_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-4|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	MULTI-MSMS	A375_MHC_IP_R2	2	571.6534423828125	2	571.254694	1140.49483	-1.1397	-0.00065108	-0.35159	-0.00020085	-1.4913	-0.00085193	571.2547201754998	29.308	0.40558	30.007	29.83	30.236	0.69872					9	7	2	0	0	0	0.27133	1	10255	10255		41.956	20.209	1	4100300			37658	5986	27558	27789	36688	36688					-0.06979278232734032
NRALTVRLRV	10	Unmodified	_NRALTVRLRV_					0	0	0			REV__ENST00000475622.5_1_5:1463255-1463705:-|nuORF	REV__ENST00000475622.5_1_5:1463255-1463705:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	599.7792358398438	2	599.380563	1196.74657	-0.66522	-0.00039872	-1.0358	-0.00062084	-1.701	-0.0010196	599.3796945479054	134.95	0.30563	134.95	134.83	135.13	0					12	5	3	0	0	0	0.94667	1	52051	52051		2.9952	0.93549	1	4638600	+		37659	25170	27559	27790	36689	36689					0.15606984919440947
NRALTVRLRV	10	Unmodified	_NRALTVRLRV_					0	0	0			REV__ENST00000475622.5_1_5:1463255-1463705:-|nuORF	REV__ENST00000475622.5_1_5:1463255-1463705:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	599.380563	1196.74657	-0.40815	-0.00024464	-1.2235	-0.00073333	-1.6316	-0.00097797	599.3799295606173	134.87	0.3526	135	134.85	135.2	0.13901	0.027301	-9.2672E-05	NaN	2.9952	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2502800	+		37660	25170	27559	27790							0.15606984919440947
NRDLYNIY	8	Unmodified	_NRDLYNIY_					0	0	0			REV__ENST00000515743.5_1_4:10078742-10093271:-|nuORF	REV__ENST00000515743.5_1_4:10078742-10093271:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	535.6851806640625	2	535.766906	1069.51926	-0.88223	-0.00047267	-0.62271	-0.00033363	-1.5049	-0.0008063	535.7663391362173	32.181	2.133	32.917	32.605	34.738	0.73692					78	41	4	0	0	0	0.74945	1	11840	11840		20.454	0	1	39357000	+		37661	16585	27560	27791	36690	36690					-0.012720180792030078
NRDWLDWTY	9	Unmodified	_NRDWLDWTY_					0	0	0		ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;nc|ENSG00000051108|Q15011-4|HERPUD1	ENSG00000051108|ENST00000439977|HERPUD1	ENSG00000051108|ENST00000439977|HERPUD1	MULTI-SECPEP	A375_MHC_IP_R1	1	423.9510498046875	3	423.528005	1267.56219	0.022001	9.318E-06	0.34465	0.00014597	0.36666	0.00015529	423.52804951193707	37.302	1.0672	37.302	36.795	37.862	0					27	20	2	0	0	0	0.79429	1	12711	12711		7.1017	1.3183	1	1049500			37662	1233	27561	27792	36691	36691					-0.06089248021771709
NRELTNQEF	9	Unmodified	_NRELTNQEF_					0	0	0			REV__ENSG00000153975|ENST00000368576|ZUP1	REV__ENSG00000153975|ENST00000368576|ZUP1	MSMS	A375_MHC_IP_R2	2	575.6690673828125	2	575.778002	1149.54145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.772	1	40.547	40.047	41.047	0.77451								0	0	0	0.15142	1	14702	14702		19.257	3.1079	1		+		37663	19859	27562	27793	36692	36692					-0.027338384014456096
NRELYMRRRKP	11	Unmodified	_NRELYMRRRKP_					0	0	0		ENST00000511640.1_1_5:25909808-25910855:+|nuORF	ENST00000511640.1_1_5:25909808-25910855:+|nuORF	ENST00000511640.1_1_5:25909808-25910855:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	380.12445068359375	4	380.46631	1517.83613	0.017051	6.4872E-06	-0.33384	-0.00012702	-0.31679	-0.00012053	380.7158575626741	26.384	0.35416	26.384	26.17	26.524	0					27	6	5	0	0	0	1.0008	1	7782	7782		2.084	0	1	3880400			37664	12910	27563	27794	36693	36693					0.0979287153650148
NRFKGVKYF	9	Unmodified	_NRFKGVKYF_					0	0	0		nc|ENSG00000074603|Q6V1X1-2|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8;nc|ENSG00000074603|Q6V1X1-6|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	MULTI-MSMS	A375_MHC_IP_R1	1	387.2855224609375	3	386.885464	1157.63456	0.2972	0.00011498	0.0089223	3.4519E-06	0.30612	0.00011843	386.88545515302343	33.707	1.1639	33.707	33.393	34.557	0					62	22	5	0	0	0	0.0096822	1	10997	10997		110.55	59.137	1	121840000			37665	1586	27564	27795	36694	36694					0.06205130842477047
NRFKGVKYF	9	Unmodified	_NRFKGVKYF_					0	0	0		nc|ENSG00000074603|Q6V1X1-2|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8;nc|ENSG00000074603|Q6V1X1-6|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	MULTI-MSMS	A375_MHC_IP_R1	1	580.2244873046875	2	579.824558	1157.63456	-0.13279	-7.6993E-05	0.17544	0.00010172	0.042652	2.473E-05	579.8246440823863	33.717	0.40252	33.717	33.496	33.898	0					16	7	3	0	0	0	0.020087	1	11050	11050		92.491	50.652	1	5647300			37666	1586	27564	27795	36695	36695					0.06205130842477047
NRFKGVKYF	9	Unmodified	_NRFKGVKYF_					0	0	0		nc|ENSG00000074603|Q6V1X1-2|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8;nc|ENSG00000074603|Q6V1X1-6|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	MULTI-MSMS	A375_MHC_IP_R2	2	387.285400390625	3	386.885464	1157.63456	-0.19842	-7.6764E-05	0.2793	0.00010806	0.080885	3.1293E-05	386.8855393395552	32.661	1.2721	33.398	33.01	34.282	0.73691					70	24	5	0	0	0	0.0099679	1	11604	11604		121.53	70.119	1	129170000			37667	1586	27564	27795	36696	36696					0.06205130842477047
NRFKGVKYF	9	Unmodified	_NRFKGVKYF_					0	0	0		nc|ENSG00000074603|Q6V1X1-2|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8;nc|ENSG00000074603|Q6V1X1-6|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	MULTI-SECPEP	A375_MHC_IP_R2	2	580.2244873046875	2	579.824558	1157.63456	-0.33283	-0.00019298	-0.032715	-1.8969E-05	-0.36555	-0.00021195	579.8244670023666	32.655	0.40663	33.392	33.213	33.62	0.73692					15	7	3	0	0	0	0.04395	1	11654	11654		92.491	50.652	1	6478800			37668	1586	27564	27795	36697	36697					0.06205130842477047
NRFPAVNSL	9	Unmodified	_NRFPAVNSL_					0	0	0		nc|ENSG00000108587|O95249-2|GOSR1;ENSG00000108587|ENST00000451249|GOSR1;nc|ENSG00000108587|O95249|GOSR1	nc|ENSG00000108587|O95249-2|GOSR1	nc|ENSG00000108587|O95249-2|GOSR1	MULTI-SECPEP	A375_MHC_IP_R1	1	509.6773376464844	2	509.277441	1016.54033	-0.48242	-0.00024569	-1.8624	-0.00094848	-2.3448	-0.0011942	509.27746089829805	58.301	0.91269	58.301	57.974	58.887	0					59	17	6	0	0	0	0.05021	1	20922	20922		78.728	51.844	1	22960000			37669	2818	27565	27796	36698	36698					0.032719920203248876
NRFPAVNSL	9	Unmodified	_NRFPAVNSL_					0	0	0		nc|ENSG00000108587|O95249-2|GOSR1;ENSG00000108587|ENST00000451249|GOSR1;nc|ENSG00000108587|O95249|GOSR1	nc|ENSG00000108587|O95249-2|GOSR1	nc|ENSG00000108587|O95249-2|GOSR1	MULTI-SECPEP	A375_MHC_IP_R2	2	508.6923522949219	2	509.277441	1016.54033	-1.0896	-0.00055493	-2.451	-0.0012482	-3.5407	-0.0018032	509.27741641305454	57.42	0.91349	58.169	57.865	58.779	0.74894					61	17	7	0	0	0	0.034037	1	21705	21705		88.954	39.021	1	19504000			37670	2818	27565	27796	36699	36699					0.032719920203248876
NRFPWPKVL	9	Unmodified	_NRFPWPKVL_					0	0	0		nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-7|EPB41	nc|ENSG00000159023|P11171-6|EPB41	nc|ENSG00000159023|P11171-6|EPB41	MULTI-MSMS	A375_MHC_IP_R1	1	386.62591552734375	3	386.225709	1155.6553	0.28022	0.00010823	-0.0076841	-2.9678E-06	0.27254	0.00010526	386.2256644817514	81.617	1.0637	81.617	81.049	82.113	0					47	20	3	0	0	0	0.70411	1	29753	29753		6.6304	4.8881	1	2745000			37671	6343	27566	27797	36700	36700					0.08369721222129556
NRFPWPKVL	9	Unmodified	_NRFPWPKVL_					0	0	0		nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-7|EPB41	nc|ENSG00000159023|P11171-6|EPB41	nc|ENSG00000159023|P11171-6|EPB41	MULTI-MSMS	A375_MHC_IP_R2	2	386.62554931640625	3	386.225709	1155.6553	-0.1885	-7.2802E-05	-0.08393	-3.2416E-05	-0.27243	-0.00010522	386.2256623028034	80.661	1.1707	81.406	80.759	81.93	0.74473					49	22	3	0	0	0	0.44183	1	30615	30615		22.658	18.129	1	2729500			37672	6343	27566	27797	36701	36701					0.08369721222129556
NRGAAPDP	8	Unmodified	_NRGAAPDP_					0	0	0			REV__nc|ENSG00000186074|Q8TDQ1-4|CD300LF	REV__nc|ENSG00000186074|Q8TDQ1-4|CD300LF	MSMS	A375_MHC_IP_R2	2	399.1303405761719	2	399.198659	796.382765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.922	1	98.679	98.179	99.179	0.75713								0	0	0	0.16876	1	37159	37159		5.2307	0.90143	1		+		37673	27420	27567	27798	36702	36702					-0.023570875190557672
NRGHLECH	8	Unmodified	_NRGHLECH_					0	0	0			REV__ENSG00000196659|ENST00000408939|TTC30B	REV__ENSG00000196659|ENST00000408939|TTC30B	MSMS	A375_MHC_IP_R1	1	483.20556640625	2	483.222143	964.429732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.91	1	143.91	143.41	144.41	0								0	0	0	0.16876	1	55200	55200		2.5775	0.51773	1		+		37674	22218	27568	27799	36703	36703					-0.05390551239565866
NRGLCVDGQCV	11	Unmodified	_NRGLCVDGQCV_					0	0	0		nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC	nc|ENSG00000041982|P24821-6|TNC	nc|ENSG00000041982|P24821-6|TNC	MULTI-SECPEP	A375_MHC_IP_R1	1	581.6987915039062	2	582.268432	1162.52231	-0.15074	-8.777E-05	1.47	0.00085595	1.3193	0.00076818	582.2690965136729	63.132	0.81783	63.132	62.711	63.529	0					35	15	3	0	0	0	0.86796	1	22845	22845		26.268	4.5215	1	3645500			37675	1171	27569	27800	36704	36704					-0.0524483428835083
NRGQEDGVC	9	Unmodified	_NRGQEDGVC_					0	0	0			REV__ENSG00000163975|ENST00000296350|MELTF	REV__ENSG00000163975|ENST00000296350|MELTF	MULTI-MSMS	A375_MHC_IP_R1	1	489.6089172363281	2	489.208898	976.403243	-0.3451	-0.00016882	0.6757	0.00033056	0.3306	0.00016173	489.2091998487313	31.338	1.2165	31.338	30.653	31.87	0					41	23	2	0	0	0	0.38603	1	9951	9951		25.399	2.2509	1	4220200	+		37676	20435	27570	27801	36705	36705					-0.08590284921547209
NRGQEDGVC	9	Unmodified	_NRGQEDGVC_					0	0	0			REV__ENSG00000163975|ENST00000296350|MELTF	REV__ENSG00000163975|ENST00000296350|MELTF	MULTI-SECPEP	A375_MHC_IP_R1	1	489.6089172363281	2	489.208898	976.403243	-0.3451	-0.00016882	0.6757	0.00033056	0.3306	0.00016173	489.2091998487313	31.338	1.2165	31.338	30.653	31.87	0					41	23	2	0	0	0	0.60917	1	9951	9951		25.399	2.2509	1	4220200	+		37677	20435	27570	27801	36706	36706					-0.08590284921547209
NRGQEDGVC	9	Unmodified	_NRGQEDGVC_					0	0	0			REV__ENSG00000163975|ENST00000296350|MELTF	REV__ENSG00000163975|ENST00000296350|MELTF	MULTI-MSMS	A375_MHC_IP_R2	2	489.60906982421875	2	489.208898	976.403243	-0.58384	-0.00028562	0.66765	0.00032662	0.08381	4.1E-05	489.2092123712994	30.587	1.0114	31.305	30.86	31.872	0.71857					36	19	2	0	0	0	0.51106	1	10986	10986		19.257	1.122	1	3481700	+		37678	20435	27570	27801	36707	36707					-0.08590284921547209
NRIVALVNEKT	11	Unmodified	_NRIVALVNEKT_					0	0	0			REV__nc|ENSG00000100473|O43405-2|COCH	REV__nc|ENSG00000100473|O43405-2|COCH	MULTI-MSMS	A375_MHC_IP_R2	2	419.98223876953125	3	419.582221	1255.72483	-0.1459	-6.1218E-05	-0.2449	-0.00010276	-0.3908	-0.00016397	419.58207551370543	27.935	0.30506	28.613	28.452	28.757	0.67857					13	5	3	0	0	0	0.68694	1	9621	9621		10.016	2.1702	1	5839600	+		37679	17096	27571	27802	36708	36708					0.10720135380188367
NRIVALVNEKT	11	Unmodified	_NRIVALVNEKT_					0	0	0			REV__nc|ENSG00000100473|O43405-2|COCH	REV__nc|ENSG00000100473|O43405-2|COCH	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	419.582221	1255.72483	-0.1459	-6.1218E-05	-0.2449	-0.00010276	-0.3908	-0.00016397	419.58207551370543	27.935	0.30506	28.613	28.452	28.757	0.67857	-0.0019057	0.000196	NaN	10.016	13	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5839600	+		37680	17096	27571	27802							0.10720135380188367
NRKFRHDKRVY	11	Unmodified	_NRKFRHDKRVY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000571346.1_1_17:1586825-1588116:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R1	1	760.3211669921875	2	759.923658	1517.83276	-0.73427	-0.00055799	-1.6899	-0.0012842	-2.4241	-0.0018422	759.9221670693317	90.937	0.65804	90.937	90.641	91.299	0					21	12	3	0	0	0	0.73378	1	33410	33410		5.2969	2.3016	1	3687700			37681	7864	27572	27803	36709	36709					0.09455944754154189
NRKFRHDKRVY	11	Unmodified	_NRKFRHDKRVY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000571346.1_1_17:1586825-1588116:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	759.923658	1517.83276	-0.80177	-0.00060928	-1.2327	-0.00093675	-2.0345	-0.001546	759.9226281246256	90.056	0.4072	90.788	90.597	91.004	0.7318	-0.074557	0.00021385	NaN	5.2969	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3374800			37682	7864	27572	27803							0.09455944754154189
NRKQMKRWQRW	11	Unmodified	_NRKQMKRWQRW_					0	0	0		ENST00000216456.6_1_14:68126581-68129225:-|nuORF	ENST00000216456.6_1_14:68126581-68129225:-|nuORF	ENST00000216456.6_1_14:68126581-68129225:-|nuORF	MSMS	A375_MHC_IP_R2	2	539.6450805664062	3	539.628282	1615.86302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.304	1	37.075	36.575	37.575	0.7709								0	0	0	0.16334	1	13224	13224		0.45452	0.12525	1				37683	10095	27573	27804	36710	36710					0.07971980147681279
NRKTEPIAA	9	Unmodified	_NRKTEPIAA_					0	0	0			REV__nc|ENSG00000160710|P55265-5|ADAR	REV__nc|ENSG00000160710|P55265-5|ADAR	MULTI-MSMS	A375_MHC_IP_R2	2	500.6827087402344	2	500.282723	998.550893	-0.57142	-0.00028587	0.50717	0.00025373	-0.064246	-3.2141E-05	500.28254467430327	122.63	1.7211	123	122.57	124.29	0.3766					56	33	3	0	0	0	0.64808	2	47095	47095;47374		11.64	7.3111	1	76280000	+		37684	20181	27574	27805	36711;36712	36711					0.05155974674732988
NRKTEPIAA	9	Unmodified	_NRKTEPIAA_					0	0	0			REV__nc|ENSG00000160710|P55265-5|ADAR	REV__nc|ENSG00000160710|P55265-5|ADAR	MULTI-SECPEP	A375_MHC_IP_R2	2	500.6827087402344	2	500.282723	998.550893	-0.57142	-0.00028587	0.50717	0.00025373	-0.064246	-3.2141E-05	500.28254467430327	122.63	1.7211	123	122.57	124.29	0.3766					56	33	3	0	0	0	0.76187	1	47095	47095		11.64	7.3111	1	76280000	+		37685	20181	27574	27805	36713	36713					0.05155974674732988
NRKVTRKPPV	10	Unmodified	_NRKVTRKPPV_					0	0	0			REV__ENSG00000075131|ENST00000261881|TIPIN	REV__ENSG00000075131|ENST00000261881|TIPIN	MULTI-SECPEP	A375_MHC_IP_R1	1	399.3186340332031	3	398.919168	1193.73567	-0.53367	-0.00021289	-0.96657	-0.00038558	-1.5002	-0.00059847	398.9187910682568	138.89	0.40445	138.89	138.76	139.17	0					13	7	2	0	0	0	0.95024	1	53427	53427		0.13989	0.017027	1	1976000	+		37686	16649	27575	27806	36714	36714					0.14655582545174184
NRLHFWVLLFF	11	Unmodified	_NRLHFWVLLFF_					0	0	0		ENST00000574285.2_1_16:9203969-9204164:+|nuORF	ENST00000574285.2_1_16:9203969-9204164:+|nuORF	ENST00000574285.2_1_16:9203969-9204164:+|nuORF	MSMS	A375_MHC_IP_R2	2	746.4151000976562	2	746.416614	1490.81868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.06	1	113.77	113.27	114.27	0.70985								0	0	0	0.16331	1	42627	42627		1.4819	0.15237	1				37687	13630	27576	27807	36715	36715					0.09289899273153424
NRLKREIEKRR	11	Unmodified	_NRLKREIEKRR_					0	0	0		ENSG00000163322|ENST00000321945|ABRAXAS1;nc|ENSG00000163322|Q6UWZ7-2|ABRAXAS1;ENST00000517431.1_1_8:17946749-17946827:-|nuORF	ENSG00000163322|ENST00000321945|ABRAXAS1	ENSG00000163322|ENST00000321945|ABRAXAS1	MULTI-MSMS	A375_MHC_IP_R1	1	749.85791015625	2	749.457865	1496.90118	-0.87171	-0.00065331	0.84668	0.00063455	-0.025034	-1.8762E-05	749.4582320856723	143.09	0.70689	143.09	142.64	143.34	0					32	13	3	0	0	0	0.73795	1	54839	54839		1.3295	0.13619	1	3698400			37688	6648	27577	27808	36716	36716					0.17260189334001552
NRLQNMEVT	9	Unmodified	_NRLQNMEVT_					0	0	0		ENSG00000031698|ENST00000234677|SARS1;ENST00000468588.1_1_1:109779820-109780507:+|nuORF	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	552.1560668945312	2	552.776948	1103.53934	-0.32076	-0.00017731	3.0387	0.0016797	2.7179	0.0015024	553.2795265318297	70.219	0.5603	70.219	69.882	70.442	0					16	10	2	0	0	0	0.4261	1	25402	25402		30.637	0	1	2581600			37689	1114	27578	27809	36717	36717					-0.008285904109015974
NRLQVTKLI	9	Unmodified	_NRLQVTKLI_					0	0	0			REV__CON__Q3SX14	REV__CON__Q3SX14	MULTI-MSMS	A375_MHC_IP_R2	2	362.5990295410156	3	362.232752	1083.67643	-0.42092	-0.00015247	-0.18135	-6.5691E-05	-0.60226	-0.00021816	362.2326680501226	19.105	0.53321	19.708	19.452	19.986	0.60308					16	10	2	0	0	0	0.74768	1	5722	5722		2.7352	0.23671	1	19070000	+	+	37690	15885	27579	27810	36718	36718					0.1379368653099391
NRLWLSWRRKR	11	Unmodified	_NRLWLSWRRKR_					0	0	0		ENST00000467906.5_1_6:43030793-43034124:+|nuORF	ENST00000467906.5_1_6:43030793-43034124:+|nuORF	ENST00000467906.5_1_6:43030793-43034124:+|nuORF	MSMS	A375_MHC_IP_R2	2	785.8694458007812	2	785.963117	1569.91168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.57	1	129.81	129.31	130.31	0.23946								0	0	0	0.16337	1	50921	50921		1.1933	0.88631	1				37691	12289	27580	27811	36719	36719					0.14952216779079208
NRMCFPPWGLT	11	Unmodified	_NRMCFPPWGLT_					0	0	0		ENST00000375771.5_2_1:16112709-16112913:+|nuORF	ENST00000375771.5_2_1:16112709-16112913:+|nuORF	ENST00000375771.5_2_1:16112709-16112913:+|nuORF	MSMS	A375_MHC_IP_R1	1	441.25982666015625	3	441.210854	1320.61073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.921	1	43.921	43.421	44.421	0								0	0	0	0.16224	1	15298	15298		7.0371	1.6344	1				37692	11277	27581	27812	36720	36720					-0.03674793977893387
NRPGFIKDI	9	Unmodified	_NRPGFIKDI_					0	0	0		ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	MULTI-MSMS	A375_MHC_IP_R1	1	354.2696228027344	3	353.869703	1058.58728	0.10881	3.8505E-05	-0.33626	-0.00011899	-0.22745	-8.0486E-05	353.86958946809654	42.64	1.165	42.64	42.032	43.197	0					25	11	3	0	0	0	0.44024	1	14775	14775		16.566	6.4153	1	5187200			37693	9314	27582	27813	36721	36721					0.0603285157146729
NRPGFIKDI	9	Unmodified	_NRPGFIKDI_					0	0	0		ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	MULTI-MATCH	A375_MHC_IP_R2	2		3	353.869703	1058.58728	-0.28449	-0.00010067	-0.18254	-6.4596E-05	-0.46704	-0.00016527	353.8696080223986	41.685	0.46006	42.46	42.198	42.659	0.77451	-0.090059	6.0146E-05	NaN	16.566	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5219700			37694	9314	27582	27813							0.0603285157146729
NRPIRKRRDRF	11	Unmodified	_NRPIRKRRDRF_					0	0	0			REV__nc|ENSG00000147202|O60879-2|DIAPH2	REV__nc|ENSG00000147202|O60879-2|DIAPH2	MULTI-SECPEP	A375_MHC_IP_R1	1	504.9500427246094	3	505.302675	1512.8862	-0.68996	-0.00034864	0.10944	5.5299E-05	-0.58052	-0.00029334	505.3026475780782	137.69	0.86902	137.69	137.59	138.46	0					21	16	2	0	0	0	1.0015	1	53219	53219		0.40827	0.31342	1	842280	+		37695	19577	27583	27814	36722	36722					0.15026742256668513
NRPKFLNAL	9	Unmodified	_NRPKFLNAL_					0	0	0		ENSG00000198130|ENST00000359678|HIBCH;nc|ENSG00000198130|Q6NVY1-2|HIBCH	ENSG00000198130|ENST00000359678|HIBCH	ENSG00000198130|ENST00000359678|HIBCH	MULTI-SECPEP	A375_MHC_IP_R1	1	537.2162475585938	2	536.816733	1071.61891	-0.80027	-0.0004296	-0.28579	-0.00015342	-1.0861	-0.00058301	536.816256841667	53.168	0.96445	53.168	52.897	53.861	0					30	18	3	0	0	0	0.47368	1	18967	18967		20.454	9.6297	1	3723100			37696	9232	27584	27815	36723	36723					0.08596844325415987
NRPKFLNAL	9	Unmodified	_NRPKFLNAL_					0	0	0		ENSG00000198130|ENST00000359678|HIBCH;nc|ENSG00000198130|Q6NVY1-2|HIBCH	ENSG00000198130|ENST00000359678|HIBCH	ENSG00000198130|ENST00000359678|HIBCH	MULTI-SECPEP	A375_MHC_IP_R2	2	537.2159423828125	2	536.816733	1071.61891	-1.2283	-0.00065939	0.33432	0.00017947	-0.89402	-0.00047993	536.8167562635211	52.108	0.40689	52.86	52.626	53.032	0.75225					17	7	3	0	0	0	0.14422	1	19618	19618		61.357	61.357	1	4462800			37697	9232	27584	27815	36724	36724					0.08596844325415987
NRPNLYYEV	9	Unmodified	_NRPNLYYEV_					0	0	0		ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	MULTI-MSMS	A375_MHC_IP_R1	1	584.6931762695312	2	584.293288	1166.57202	-0.27004	-0.00015779	0.018655	1.09E-05	-0.25139	-0.00014688	584.2932759169954	55.003	0.81211	55.003	54.619	55.431	0					39	15	5	0	0	0	0.012968	1	19625	19625		92.491	52.542	1	20625000			37698	868	27585	27816	36725	36725					-0.00460060016416719
NRPNLYYEV	9	Unmodified	_NRPNLYYEV_					0	0	0		ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	MULTI-MSMS	A375_MHC_IP_R2	2	584.6930541992188	2	584.293288	1166.57202	-0.73615	-0.00043013	0.20986	0.00012262	-0.52629	-0.00030751	584.2933744782399	54.241	0.76185	54.992	54.608	55.37	0.75075					39	14	4	0	0	0	0.012968	1	20425	20425		92.491	52.542	1	20187000			37699	868	27585	27816	36726	36726					-0.00460060016416719
NRPWRDRIRRR	11	Unmodified	_NRPWRDRIRRR_					0	0	0		ENST00000606385.1_1_6:25016058-25042154:-|nuORF	ENST00000606385.1_1_6:25016058-25042154:-|nuORF	ENST00000606385.1_1_6:25016058-25042154:-|nuORF	MSMS	A375_MHC_IP_R2	2	527.6493530273438	3	527.641691	1579.90324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.902	1	84.642	84.142	85.142	0.73962								0	0	0	0.16358	1	31892	31892		0.08335	0.08335	1				37700	13912	27586	27817	36727	36727					0.13648662862465244
NRQFRRYKWFV	11	Unmodified	_NRQFRRYKWFV_					0	0	0			REV__ENSG00000204019|ENST00000371894|CT83	REV__ENSG00000204019|ENST00000371894|CT83	MSMS	A375_MHC_IP_R1	1	533.9710083007812	3	533.960026	1598.85825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.833	1	37.833	37.333	38.333	0								0	0	0	0.1635	1	12781	12781		0.50596	0.051438	1		+		37701	22482	27587	27818	36728	36728					0.08277419276578257
NRQLSPFCD	9	Unmodified	_NRQLSPFCD_					0	0	0		ENST00000508797.1_1_5:179035408-179036813:+|nuORF	ENST00000508797.1_1_5:179035408-179036813:+|nuORF	ENST00000508797.1_1_5:179035408-179036813:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	540.181640625	2	540.250566	1078.48658	-0.85191	-0.00046024	1.0208	0.00055148	0.16888	9.1238E-05	540.2511744204112	39.911	0.65898	39.911	39.441	40.1	0					17	12	2	0	0	0	0.74169	1	13659	13659		7.609	0	1	2023600			37702	12884	27588	27819	36729	36729					-0.04952548473693241
NRQWKLQLHA	10	Unmodified	_NRQWKLQLHA_					0	0	0		ENST00000261479.8_1_14:35782236-35783624:+|nuORF	ENST00000261479.8_1_14:35782236-35783624:+|nuORF	ENST00000261479.8_1_14:35782236-35783624:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	432.3105773925781	3	431.910672	1292.71019	-0.6263	-0.0002705	-0.35564	-0.0001536	-0.98193	-0.00042411	431.91068412265696	26.455	0.5587	27.115	26.703	27.262	0.65992					17	10	2	0	0	0	0.71881	1	8966	8966		3.8763	0.28366	1	2724900			37703	10281	27589	27820	36730	36730					0.07554108022759465
NRQWKLQLHA	10	Unmodified	_NRQWKLQLHA_					0	0	0		ENST00000261479.8_1_14:35782236-35783624:+|nuORF	ENST00000261479.8_1_14:35782236-35783624:+|nuORF	ENST00000261479.8_1_14:35782236-35783624:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	431.910672	1292.71019	-0.32614	-0.00014086	-0.2404	-0.00010383	-0.56653	-0.00024469	432.2447208289322	27.114	0.50255	27.114	26.828	27.331	0	-0.00040878	7.7077E-05	NaN	3.8763	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2948600			37704	10281	27589	27820							0.07554108022759465
NRRKVRRV	8	Unmodified	_NRRKVRRV_					0	0	0			REV__ENST00000514660.1_1_6:11306216-11306354:-|nuORF	REV__ENST00000514660.1_1_6:11306216-11306354:-|nuORF	MSMS	A375_MHC_IP_R2	2	542.709228515625	2	542.35214	1082.68973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.77	1	141.8	141.3	142.3	0.030731								0	0	0	0.16876	1	55439	55439		0.79363	0.19213	1		+		37705	24872	27590	27821	36731	36731					0.1516898215359106
NRRQKSELP	9	Unmodified	_NRRQKSELP_					0	0	0			REV__ENSG00000075568|ENST00000186436|TMEM131	REV__ENSG00000075568|ENST00000186436|TMEM131	MSMS	A375_MHC_IP_R1	1	376.6139221191406	3	376.547511	1126.6207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.128	1	35.128	34.628	35.628	0								0	0	0	0.15486	1	11656	11656		4.897	0.36815	1		+		37706	16659	27591	27822	36732	36732					0.06245853343375529
NRRRRKMWTVK	11	Unmodified	_NRRRRKMWTVK_					0	0	0			REV__ENST00000264447.8_1_2:71650545-71650620:+|nuORF	REV__ENST00000264447.8_1_2:71650545-71650620:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	511.20721435546875	3	510.968527	1529.88375	-0.55927	-0.00028577	0.077244	3.9469E-05	-0.48203	-0.0002463	510.9686872306031	141.73	1.8374	141.76	141	142.84	0.030731					60	35	2	0	0	0	1.0015	1	55483	55483		0	0	1	1900600	+		37707	23237	27592	27823	36733	36733					0.14000570527355194
NRRRRQTWRRF	11	Unmodified	_NRRRRQTWRRF_					0	0	0			REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	545.044189453125	3	544.645324	1630.91414	-0.79255	-0.00043166	1.4953	0.00081441	0.70276	0.00038276	545.3159649836235	131.63	2.9437	131.63	130.82	133.76	0					108	57	3	0	0	0	0.73924	4	50711	50711;50939;50974;51081		0.094841	0.094841	1	5949000	+		37708	23077	27593	27824	36734;36735;36736;36737	36734					0.12392065236736016
NRRRRQTWRRF	11	Unmodified	_NRRRRQTWRRF_					0	0	0			REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	545.0443725585938	3	544.645324	1630.91414	-0.85414	-0.0004652	-0.52599	-0.00028648	-1.3801	-0.00075168	544.6446195775072	136.21	0.77025	136.21	135.9	136.67	0					26	14	3	0	0	0	1.0015	1	52514	52514		0.094841	0.094841	1	1507100	+		37709	23077	27593	27824	36738	36738					0.12392065236736016
NRRRRQTWRRF	11	Unmodified	_NRRRRQTWRRF_					0	0	0			REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	545.2238159179688	3	544.645324	1630.91414	-0.79255	-0.00043166	1.4953	0.00081441	0.70276	0.00038276	545.3159649836235	131.63	2.9437	131.63	130.82	133.76	0					108	57	3	0	0	0	1.0015	1	50974	50974		0.094841	0.094841	1	5949000	+		37710	23077	27593	27824	36739	36739					0.12392065236736016
NRRRRQTWRRF	11	Unmodified	_NRRRRQTWRRF_					0	0	0			REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	545.044677734375	3	544.645324	1630.91414	-0.78607	-0.00042813	-0.54698	-0.00029791	-1.333	-0.00072604	544.6449249233463	131.18	2.4408	131.37	130.88	133.32	0.18954					81	47	2	0	0	0	0.73934	3	51630	51630;51909;52022		0	0	1	4437600	+		37711	23077	27593	27824	36740;36741;36742	36740					0.12392065236736016
NRRRRQTWRRF	11	Unmodified	_NRRRRQTWRRF_					0	0	0			REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	MSMS	A375_MHC_IP_R2	2	544.6880493164062	3	544.645324	1630.91414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.136	1	78.879	78.379	79.379	0.74293								0	0	0	0.1636	1	29672	29672		0	0	1		+		37712	23077	27593	27824	36743	36743					0.12392065236736016
NRRRRQTWRRF	11	Unmodified	_NRRRRQTWRRF_					0	0	0			REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	545.0442504882812	3	544.645324	1630.91414	-0.65441	-0.00035642	-0.84527	-0.00046037	-1.4997	-0.0008168	544.6448407154346	136.23	1.0221	136.34	135.69	136.71	0.11134					25	19	2	0	0	0	1.0015	1	53524	53524		0.094841	0.094841	1	1763300	+		37713	23077	27593	27824	36744	36744					0.12392065236736016
NRRRRQTWRRF	11	Unmodified	_NRRRRQTWRRF_					0	0	0			REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	545.224365234375	3	544.645324	1630.91414	-0.78607	-0.00042813	-0.54698	-0.00029791	-1.333	-0.00072604	544.6449249233463	131.18	2.4408	131.37	130.88	133.32	0.18954					81	47	2	0	0	0	1.0015	1	51945	51945		0.094841	0.094841	1	4437600	+		37714	23077	27593	27824	36745	36745					0.12392065236736016
NRRRRRDWFWR	11	Unmodified	_NRRRRRDWFWR_					0	0	0		ENST00000361972.8_1_10:7212945-7217999:-|nuORF	ENST00000361972.8_1_10:7212945-7217999:-|nuORF	ENST00000361972.8_1_10:7212945-7217999:-|nuORF	MSMS	A375_MHC_IP_R1	1	568.6741943359375	3	568.645324	1702.91414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.139	1	54.139	53.639	54.639	0								0	0	0	0.16358	1	19318	19318		0.08335	0	1				37715	11054	27594	27825	36746	36746					0.09080065236776136
NRSEFVSW	8	Unmodified	_NRSEFVSW_					0	0	0			REV__USP29|p.D116N|2|0.3|ENSG00000131864|chr19:57129021-57129021|G/A|missense_variant	REV__USP29|p.D116N|2|0.3|ENSG00000131864|chr19:57129021-57129021|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	513.1453857421875	2	512.745973	1023.47739	-0.54505	-0.00027947	-0.33802	-0.00017332	-0.88307	-0.00045279	512.7457463376891	58.879	0.76351	58.879	58.582	59.346	0					30	14	3	0	0	0	0.51581	1	21137	21137		48.346	4.4876	1	10845000	+		37716	18623	27595	27826	36747	36747					-0.033405737677071556
NRSEFVSW	8	Unmodified	_NRSEFVSW_					0	0	0			REV__USP29|p.D116N|2|0.3|ENSG00000131864|chr19:57129021-57129021|G/A|missense_variant	REV__USP29|p.D116N|2|0.3|ENSG00000131864|chr19:57129021-57129021|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	513.1452026367188	2	512.745973	1023.47739	-1.0275	-0.00052684	-0.17107	-8.7717E-05	-1.1986	-0.00061456	512.745840875522	58.054	0.60778	58.803	58.528	59.135	0.74894					31	11	4	0	0	0	0.68328	2	21942	21938;21942		39.957	4.3451	1	11172000	+		37717	18623	27595	27826	36748;36749	36749					-0.033405737677071556
NRSILQWI	8	Unmodified	_NRSILQWI_					0	0	0		ENST00000453780.1_1_1:26215480-26215597:+|nuORF	ENST00000453780.1_1_1:26215480-26215597:+|nuORF	ENST00000453780.1_1_1:26215480-26215597:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	515.6951904296875	2	515.295633	1028.57671	-0.49543	-0.00025529	0.35646	0.00018368	-0.13897	-7.1611E-05	515.2957710932361	104.31	0.96395	104.31	103.98	104.94	0					48	18	4	0	0	0	0.72637	1	38267	38267		39.95	9.3132	1	33895000			37718	12102	27596	27827	36750	36750					0.06356868917032443
NRSLAPLWL	9	Unmodified	_NRSLAPLWL_					0	0	0			REV__chr6:41787718-41789232|428|45.11|0.0|22.11|+|1|None,TOMM6|1	REV__chr6:41787718-41789232|428|45.11|0.0|22.11|+|1|None,TOMM6|1	MULTI-MSMS	A375_MHC_IP_R2	2	535.8021240234375	2	535.311284	1068.60801	-0.68586	-0.00036715	-1.2315	-0.00065922	-1.9173	-0.0010264	535.8114993528776	101.01	0.51398	101.78	101.39	101.91	0.76428					13	9	2	0	0	0	0.62591	1	38272	38272		13.906	2.4113	1	1097100	+		37719	15767	27597	27828	36751	36751					0.07645441951149223
NRSLAPLWL	9	Unmodified	_NRSLAPLWL_					0	0	0			REV__chr6:41787718-41789232|428|45.11|0.0|22.11|+|1|None,TOMM6|1	REV__chr6:41787718-41789232|428|45.11|0.0|22.11|+|1|None,TOMM6|1	MULTI-MATCH	A375_MHC_IP_R1	1		2	535.311284	1068.60801	-0.6384	-0.00034174	-0.3336	-0.00017858	-0.972	-0.00052032	535.3109841830437	102.01	0.25487	102.01	101.85	102.1	0	0.11515	9.5475E-05	NaN	13.906	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	693200	+		37720	15767	27597	27828							0.07645441951149223
NRSLAPLWL	9	Unmodified	_NRSLAPLWL_					0	0	0			REV__chr6:41787718-41789232|428|45.11|0.0|22.11|+|1|None,TOMM6|1	REV__chr6:41787718-41789232|428|45.11|0.0|22.11|+|1|None,TOMM6|1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	535.311284	1068.60801	-0.68586	-0.00036715	-1.2315	-0.00065922	-1.9173	-0.0010264	535.8114993528776	101.01	0.51398	101.78	101.39	101.91	0.76428	-0.11515	-0.0008658	NaN	13.906	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1097100	+		37721	15767	27597	27828							0.07645441951149223
NRSTTVRLL	9	Unmodified	_NRSTTVRLL_					0	0	0		nc|ENSG00000130175|P14314-2|PRKCSH;nc|ENSG00000130175|P14314|PRKCSH;ENSG00000130175|ENST00000677123|PRKCSH	nc|ENSG00000130175|P14314-2|PRKCSH	nc|ENSG00000130175|P14314-2|PRKCSH	MULTI-SECPEP	A375_MHC_IP_R1	1	354.280517578125	3	353.88049	1058.61964	-0.0035343	-1.2507E-06	0.038461	1.3611E-05	0.034927	1.236E-05	353.8805293464759	33.573	0.35461	33.573	33.393	33.748	0					11	6	2	0	0	0	0.46121	1	11003	11003		32.037	32.037	1	4830400			37722	4227	27598	27829	36752	36752					0.09267638974483816
NRSTTVRLL	9	Unmodified	_NRSTTVRLL_					0	0	0		nc|ENSG00000130175|P14314-2|PRKCSH;nc|ENSG00000130175|P14314|PRKCSH;ENSG00000130175|ENST00000677123|PRKCSH	nc|ENSG00000130175|P14314-2|PRKCSH	nc|ENSG00000130175|P14314-2|PRKCSH	MULTI-SECPEP	A375_MHC_IP_R2	2	354.288818359375	3	353.88049	1058.61964	-0.2784	-9.8521E-05	0.005841	2.067E-06	-0.27256	-9.6454E-05	353.8806119347973	32.644	0.50896	33.381	33.162	33.671	0.73692					16	9	2	0	0	0	0.41731	1	11653	11653		35.612	35.612	1	3319600			37723	4227	27598	27829	36753	36753					0.09267638974483816
NRTFPLRY	8	Unmodified	_NRTFPLRY_					0	0	0		SH2D3C|p.P760Tfs*5|1|0.4|ENSG00000095370|chr9:127739811-127739812|-/T|frameshift_variant;ENSG00000095370|ENST00000314830|SH2D3C;nc|ENSG00000095370|Q8N5H7-6|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C	SH2D3C|p.P760Tfs*5|1|0.4|ENSG00000095370|chr9:127739811-127739812|-/T|frameshift_variant	SH2D3C|p.P760Tfs*5|1|0.4|ENSG00000095370|chr9:127739811-127739812|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	355.4599304199219	3	356.197931	1065.57196	-0.059816	-2.1306E-05	-0.5302	-0.00018885	-0.59001	-0.00021016	356.1977342018675	36.21	0.40558	36.21	36.033	36.439	0					13	7	2	0	0	0	0.972	1	12127	12127		4.897	0	1	5638200			37724	2041	27599	27830	36754	36754					0.04179984774282275
NRTKAVQP	8	Unmodified	_NRTKAVQP_					0	0	0			REV__ENSG00000049283|ENST00000268933|EPN3	REV__ENSG00000049283|ENST00000268933|EPN3	MULTI-MSMS	A375_MHC_IP_R2	2	457.66461181640625	2	457.264333	912.514114	-0.16701	-7.6366E-05	0.16619	7.5991E-05	-0.00081954	-3.7474E-07	457.2643102122108	108.83	6.2759	109.57	108.24	114.52	0.74683					354	122	3	0	0	0	0.77717	1	40713	40713		5.2307	5.2307	1	33927000	+		37725	16379	27600	27831	36755	36755					0.054357228488470355
NRTRNEFED	9	Unmodified	_NRTRNEFED_					0	0	0			REV__ENSG00000110321|ENST00000339995|EIF4G2	REV__ENSG00000110321|ENST00000339995|EIF4G2	MSMS	A375_MHC_IP_R2	2	394.1450500488281	3	394.182898	1179.52686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.527	1	31.245	30.745	31.745	0.71857								0	0	0	0.15486	1	10735	10735		4.5289	0	1		+		37726	17624	27601	27832	36756	36756					-0.055719105495882104
NRTRYELREF	10	Unmodified	_NRTRYELREF_					0	0	0		ENSG00000101000|ENST00000216968|PROCR	ENSG00000101000|ENST00000216968|PROCR	ENSG00000101000|ENST00000216968|PROCR	MULTI-SECPEP	A375_MHC_IP_R1	1	462.308837890625	3	461.909109	1382.7055	-0.32735	-0.00015121	0.13592	6.2781E-05	-0.19144	-8.8426E-05	461.9091054252581	24.666	0.40527	24.666	24.498	24.903	0					17	7	3	0	0	0	0.94113	1	7061	7061		4.4062	1.0504	1	12563000			37727	2242	27602	27833	36757	36757					0.029451790893062935
NRTTIQEF	8	Unmodified	_NRTTIQEF_					0	0	0		ENSG00000196171|ENST00000359610|OR6K2	ENSG00000196171|ENST00000359610|OR6K2	ENSG00000196171|ENST00000359610|OR6K2	MULTI-SECPEP	A375_MHC_IP_R2	2	504.6154479980469	2	504.759081	1007.50361	-0.88712	-0.00044778	1.031	0.00052039	0.14385	7.2612E-05	504.7599569613696	34.757	0.4548	35.52	35.273	35.727	0.76338					12	8	2	0	0	0	0.972	1	12485	12485		12.532	0.89125	1	1101500			37728	9010	27603	27834	36758	36758					0.00015695403772042482
NRVLQIIPYE	10	Unmodified	_NRVLQIIPYE_					0	0	0		PTPRA|p.T679Pfs*31|1|0.28|ENSG00000132670|chr20:3035698-3035698|C/-|frameshift_variant;nc|ENSG00000132670|P18433-6|PTPRA;ENSG00000132670|ENST00000399903|PTPRA	PTPRA|p.T679Pfs*31|1|0.28|ENSG00000132670|chr20:3035698-3035698|C/-|frameshift_variant	PTPRA|p.T679Pfs*31|1|0.28|ENSG00000132670|chr20:3035698-3035698|C/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	415.6436767578125	3	415.571434	1243.69247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.143	1	36.914	36.414	37.414	0.7709								0	0	0	0.15245	1	13151	13151		12.873	1.3547	1				37729	4435	27604	27835	36759	36759					0.0803734797721063
NRVPLRQLL	9	Unmodified	_NRVPLRQLL_					0	0	0		ENSG00000107872|ENST00000369956|FBXL15	ENSG00000107872|ENST00000369956|FBXL15	ENSG00000107872|ENST00000369956|FBXL15	MULTI-SECPEP	A375_MHC_IP_R1	1	369.9573059082031	3	370.236497	1107.68766	0.12259	4.5388E-05	0.44658	0.00016534	0.56918	0.00021073	370.2365639188649	52.892	0.40552	52.892	52.643	53.048	0					11	7	2	0	0	0	0.76106	1	18830	18830		13.615	2.097	1	1027100			37730	2766	27605	27836	36760	36760					0.13812508625142073
NRVYKSLKV	9	Unmodified	_NRVYKSLKV_					0	0	0		ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7687207-7690948:-|nuORF	ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	MSMS	A375_MHC_IP_R2	2	369.6120910644531	3	369.560869	1105.66078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.067	1	91.802	91.302	92.302	0.7345								0	0	0	0.15486	1	34650	34650		1.0715	0.3738	1				37731	1640	27606	27837	36761	36761					0.11217400013947554
NRWKVLRRFSV	11	Unmodified	_NRWKVLRRFSV_					0	0	0		ENSG00000197408|ENST00000324071|CYP2B6;nc|ENSG00000197408|P20813-2|CYP2B6	ENSG00000197408|ENST00000324071|CYP2B6	ENSG00000197408|ENST00000324071|CYP2B6	MSMS	A375_MHC_IP_R2	2	730.82080078125	2	730.933494	1459.85244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.52	1	143.54	143.04	144.04	0.024414								0	0	0	0.16353	1	56085	56085		0.35063	0.043601	1				37732	9152	27607	27838	36762	36762					0.14090320764898934
NRYDGIYKV	9	Unmodified	_NRYDGIYKV_					0	0	0		ENSG00000147854|ENST00000276893|UHRF2;ENST00000431339.1_1_X:73326627-73327404:+|nuORF;nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043|ENST00000650932|UHRF1;ENST00000540175.1_1_12:20704556-20705942:+|nuORF	ENSG00000147854|ENST00000276893|UHRF2;nc|ENSG00000276043|Q96T88-2|UHRF1	nc|ENSG00000276043|Q96T88-2|UHRF1	MULTI-MSMS	A375_MHC_IP_R1	1	376.9329528808594	3	376.532979	1126.57711	0.3903	0.00014696	-0.069798	-2.6281E-05	0.3205	0.00012068	376.5329336134842	34.972	1.3732	34.972	34.456	35.83	0					57	26	3	0	0	0	0.04093	2	11524	11524;11779		55.249	36.876	1	163810000			37733	10017;5709	27608	27839	36763;36764	36763					0.01888243846201476
NRYDGIYKV	9	Unmodified	_NRYDGIYKV_					0	0	0		ENSG00000147854|ENST00000276893|UHRF2;ENST00000431339.1_1_X:73326627-73327404:+|nuORF;nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043|ENST00000650932|UHRF1;ENST00000540175.1_1_12:20704556-20705942:+|nuORF	ENSG00000147854|ENST00000276893|UHRF2;nc|ENSG00000276043|Q96T88-2|UHRF1	nc|ENSG00000276043|Q96T88-2|UHRF1	MULTI-MSMS	A375_MHC_IP_R1	1	564.6954956054688	2	564.29583	1126.57711	-0.36257	-0.00020459	0.10396	5.8665E-05	-0.2586	-0.00014593	564.2958612499135	34.984	0.91574	34.984	34.657	35.573	0					48	17	4	0	0	0	0.0094735	1	11529	11529		107.1	54.831	1	106160000			37734	10017;5709	27608	27839	36765	36765					0.01888243846201476
NRYDGIYKV	9	Unmodified	_NRYDGIYKV_					0	0	0		ENSG00000147854|ENST00000276893|UHRF2;ENST00000431339.1_1_X:73326627-73327404:+|nuORF;nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043|ENST00000650932|UHRF1;ENST00000540175.1_1_12:20704556-20705942:+|nuORF	ENSG00000147854|ENST00000276893|UHRF2;nc|ENSG00000276043|Q96T88-2|UHRF1	nc|ENSG00000276043|Q96T88-2|UHRF1	MULTI-MSMS	A375_MHC_IP_R2	2	376.93292236328125	3	376.532979	1126.57711	-0.11762	-4.4289E-05	-0.050462	-1.9E-05	-0.16809	-6.329E-05	376.53292341738506	34.177	1.1165	34.929	34.6	35.716	0.75225					60	21	4	0	0	0	0.0099679	2	12263	12263;12531		101.54	71.703	1	223410000			37735	10017;5709	27608	27839	36766;36767	36766					0.01888243846201476
NRYDGIYKV	9	Unmodified	_NRYDGIYKV_					0	0	0		ENSG00000147854|ENST00000276893|UHRF2;ENST00000431339.1_1_X:73326627-73327404:+|nuORF;nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043|ENST00000650932|UHRF1;ENST00000540175.1_1_12:20704556-20705942:+|nuORF	ENSG00000147854|ENST00000276893|UHRF2;nc|ENSG00000276043|Q96T88-2|UHRF1	nc|ENSG00000276043|Q96T88-2|UHRF1	MULTI-SECPEP	A375_MHC_IP_R2	2	564.6954956054688	2	564.29583	1126.57711	-0.83349	-0.00047033	0.018321	1.0338E-05	-0.81517	-0.00046	564.2958341509537	34.182	0.81195	34.934	34.702	35.514	0.75225					46	15	4	0	0	0	0.033115	1	12270	12270		117.76	65.492	1	134710000			37736	10017;5709	27608	27839	36768	36768					0.01888243846201476
NRYPASSLV	9	Unmodified	_NRYPASSLV_					0	0	0		ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	MULTI-SECPEP	A375_MHC_IP_R1	1	504.1690368652344	2	503.769448	1005.52434	-0.26379	-0.00013289	0.34298	0.00017279	0.079198	3.9898E-05	503.76933799975103	42.351	0.90926	42.351	41.932	42.841	0					47	17	4	0	0	0	0.14572	1	14660	14660		62.573	33.491	1	12637000			37737	3384	27609	27840	36769	36769					0.021802857834131828
NRYPASSLV	9	Unmodified	_NRYPASSLV_					0	0	0		ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1689147949219	2	503.769448	1005.52434	-0.76945	-0.00038763	0.8195	0.00041284	0.05005	2.5214E-05	503.76951109439983	41.5	0.86434	42.274	41.895	42.759	0.77451					35	16	3	0	0	0	0.14572	1	15388	15388		53.833	15.859	1	13092000			37738	3384	27609	27840	36770	36770					0.021802857834131828
NSASGLYRL	9	Unmodified	_NSASGLYRL_					0	0	0			REV__ENSG00000163428|ENST00000295628|LRRC58	REV__ENSG00000163428|ENST00000295628|LRRC58	MSMS	A375_MHC_IP_R1	1	490.6760559082031	2	490.761623	979.508694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.136	1	91.136	90.636	91.636	0								0	0	0	0.14767	1	33488	33488		25.399	2.2509	1		+		37739	20362	27610	27841	36771	36771					0.01811999266362818
NSDDLKIEQHT	11	Unmodified	_NSDDLKIEQHT_					0	0	0			REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-MSMS	A375_MHC_IP_R1	1	650.7116088867188	2	650.312406	1298.61026	-0.33466	-0.00021763	-0.87642	-0.00056995	-1.2111	-0.00078758	650.3117322094621	25.248	0.50851	25.248	25.002	25.511	0					15	9	2	0	0	0	0.7039	1	7397	7397		15.248	3.7538	1	3238100	+		37740	20338	27611	27842	36772	36772					-0.027102188923890935
NSDELREVF	9	Unmodified	_NSDELREVF_					0	0	0			REV__ENST00000495156.5_1_X:129473893-129498660:+|nuORF	REV__ENST00000495156.5_1_X:129473893-129498660:+|nuORF	MSMS	A375_MHC_IP_R2	2	554.692626953125	2	554.767103	1107.51965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.704	1	48.465	47.965	48.965	0.76128								0	0	0	0.1499	1	17893	17893		21.747	0	1		+		37741	25008	27612	27843	36773	36773					-0.02980643149999196
NSDEMQLPE	9	Unmodified	_NSDEMQLPE_					0	0	0			REV__nc|ENSG00000140320|Q8TBE0-3|BAHD1	REV__nc|ENSG00000140320|Q8TBE0-3|BAHD1	MULTI-MSMS	A375_MHC_IP_R2	2	532.1243286132812	2	531.724046	1061.43354	-0.59548	-0.00031663	1.0541	0.0005605	0.45864	0.00024387	531.7244270538888	87.877	0.86011	88.608	88.166	89.026	0.7318					32	16	3	0	0	0	0.59266	1	33412	33412		15.248	0	1	5726800	+		37742	19202	27613	27844	36774	36774					-0.09471971046991712
NSDEMQLPE	9	Unmodified	_NSDEMQLPE_					0	0	0			REV__nc|ENSG00000140320|Q8TBE0-3|BAHD1	REV__nc|ENSG00000140320|Q8TBE0-3|BAHD1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	531.724046	1061.43354	-0.50332	-0.00026763	0.54174	0.00028806	0.038425	2.0432E-05	531.7242984057689	88.554	0.66307	88.554	88.256	88.919	0	-0.027213	-0.00015793	NaN	15.248	31	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5711600	+		37743	19202	27613	27844							-0.09471971046991712
NSDEMQLPE	9	Unmodified	_NSDEMQLPE_					0	0	0			REV__nc|ENSG00000140320|Q8TBE0-3|BAHD1	REV__nc|ENSG00000140320|Q8TBE0-3|BAHD1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	531.724046	1061.43354	-0.59548	-0.00031663	1.0541	0.0005605	0.45864	0.00024387	531.7244270538888	87.877	0.86011	88.608	88.166	89.026	0.7318	0.027213	0.00038696	NaN	15.248	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5726800	+		37744	19202	27613	27844							-0.09471971046991712
NSDILFRDK	9	Unmodified	_NSDILFRDK_					0	0	0			REV__ENSG00000165323|ENST00000525166|FAT3	REV__ENSG00000165323|ENST00000525166|FAT3	MULTI-MSMS	A375_MHC_IP_R1	1	554.6926879882812	2	554.293288	1106.57202	-0.17888	-9.9154E-05	-0.41642	-0.00023082	-0.5953	-0.00032997	554.2928208342655	48.429	0.70929	48.429	48.071	48.78	0					20	13	2	0	0	0	0.032333	1	17065	17065		72.968	23.414	1	4751700	+		37745	20574	27614	27845	36775	36775					0.0229993998361806
NSDILFRDK	9	Unmodified	_NSDILFRDK_					0	0	0			REV__ENSG00000165323|ENST00000525166|FAT3	REV__ENSG00000165323|ENST00000525166|FAT3	MULTI-SECPEP	A375_MHC_IP_R2	2	554.692626953125	2	554.293288	1106.57202	-0.63706	-0.00035312	-0.68667	-0.00038062	-1.3237	-0.00073373	554.2926328185861	47.723	0.76267	48.485	47.97	48.733	0.76128					19	14	2	0	0	0	0.14606	1	17893	17893		47.594	24.858	1	4509500	+		37746	20574	27614	27845	36776	36776					0.0229993998361806
NSDLMQTQS	9	Unmodified	_NSDLMQTQS_					0	0	0			REV__nc|ENSG00000152672|Q8N1N0-2|CLEC4F	REV__nc|ENSG00000152672|Q8N1N0-2|CLEC4F	MSMS	A375_MHC_IP_R2	2	512.1664428710938	2	512.224214	1022.43387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.56	1	64.3	63.8	64.8	0.74022								0	0	0	0.1535	1	24100	24100		15.847	0	1		+		37747	19813	27615	27846	36777	36777					-0.07644551327143745
NSDLRLRKL	9	Unmodified	_NSDLRLRKL_					0	0	0			REV__ENSG00000147485|ENST00000356297|PXDNL	REV__ENSG00000147485|ENST00000356297|PXDNL	MULTI-MSMS	A375_MHC_IP_R1	1	372.6161804199219	3	372.22789	1113.66184	0.14951	5.5652E-05	-0.47808	-0.00017796	-0.32857	-0.0001223	372.22772826186304	19.343	0.28278	19.343	19.238	19.521	0					14	5	4	0	0	0	0.57432	2	4726	4726;4795		16.149	3.9084	1	14425000	+		37748	19591	27616	27847	36778;36779	36778					0.10955614382851309
NSDLRLRKL	9	Unmodified	_NSDLRLRKL_					0	0	0			REV__ENSG00000147485|ENST00000356297|PXDNL	REV__ENSG00000147485|ENST00000356297|PXDNL	MULTI-MSMS	A375_MHC_IP_R2	2	372.6163024902344	3	372.22789	1113.66184	0.18565	6.9105E-05	-3.5481	-0.0013207	-3.3625	-0.0012516	372.56082136322925	18.882	0.34496	19.485	19.438	19.783	0.60308					21	7	4	0	0	0	0.57432	1	5630	5630		16.149	0.90062	1	19557000	+		37749	19591	27616	27847	36780	36780					0.10955614382851309
NSDLRLRKL	9	Unmodified	_NSDLRLRKL_					0	0	0			REV__ENSG00000147485|ENST00000356297|PXDNL	REV__ENSG00000147485|ENST00000356297|PXDNL	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	372.22789	1113.66184	0.14951	5.5652E-05	-0.47808	-0.00017796	-0.32857	-0.0001223	372.22772826186304	19.343	0.28278	19.343	19.238	19.521	0	-0.070973	0.00027919	NaN	16.149	14	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14425000	+		37750	19591	27616	27847							0.10955614382851309
NSDNNTIFV	9	Unmodified	_NSDNNTIFV_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487509.6_1_16:31199536-31202756:+|nuORF;SPTBN1-FUS|1|fusion;nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	nc|ENSG00000089280|P35637-2|FUS;nc|ENSG00000270647|Q92804-2|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	MULTI-MSMS	A375_MHC_IP_R1	1	512.6714477539062	2	512.240721	1022.46689	-0.4017	-0.00020577	-0.06603	-3.3823E-05	-0.46773	-0.00023959	512.2406246761268	72.873	0.9128	72.873	72.474	73.386	0					42	17	3	0	0	0	0.032333	2	26502	26457;26502		72.968	38.866	1	11513000			37751	9982;1925	27617	27848	36781;36782	36782					-0.04344601212790167
NSDNNTIFV	9	Unmodified	_NSDNNTIFV_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487509.6_1_16:31199536-31202756:+|nuORF;SPTBN1-FUS|1|fusion;nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	nc|ENSG00000089280|P35637-2|FUS;nc|ENSG00000270647|Q92804-2|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	MULTI-MSMS	A375_MHC_IP_R2	2	512.6710815429688	2	512.240721	1022.46689	-0.99576	-0.00051007	0.01802	9.2306E-06	-0.97774	-0.00050084	512.240702637714	72.042	0.86109	72.776	72.364	73.225	0.73421					40	16	3	0	0	0	0.02114	2	27293	27268;27293		82.529	53.448	1	9729400			37752	9982;1925	27617	27848	36783;36784	36784					-0.04344601212790167
NSDPGLAVGY	10	Unmodified	_NSDPGLAVGY_					0	0	0		ENSG00000113296|ENST00000350881|THBS4;ENST00000504720.5_1_5:79374662-79378961:+|nuORF;nc|ENSG00000105664|P49747-2|COMP;CON__ENSEMBL:ENSBTAP00000006074;ENSG00000105664|ENST00000222271|COMP;ENSG00000169231|ENST00000368378|THBS3;nc|ENSG00000169231|P49746-2|THBS3	ENSG00000113296|ENST00000350881|THBS4;ENSG00000169231|ENST00000368378|THBS3	ENSG00000113296|ENST00000350881|THBS4	MULTI-MSMS	A375_MHC_IP_R1	1	497.13787841796875	2	496.737814	991.461075	-0.48636	-0.00024159	0.51856	0.00025759	0.032205	1.5997E-05	496.7380161087621	65.304	0.76283	65.304	64.903	65.666	0					34	14	3	0	0	0	0.0044674	2	23584	23584;23658		96.367	48.021	1	9952700			37753	3138;7393	27618	27849	36785;36786	36785					-0.03499699724477523
NSDPGLAVGY	10	Unmodified	_NSDPGLAVGY_					0	0	0		ENSG00000113296|ENST00000350881|THBS4;ENST00000504720.5_1_5:79374662-79378961:+|nuORF;nc|ENSG00000105664|P49747-2|COMP;CON__ENSEMBL:ENSBTAP00000006074;ENSG00000105664|ENST00000222271|COMP;ENSG00000169231|ENST00000368378|THBS3;nc|ENSG00000169231|P49746-2|THBS3	ENSG00000113296|ENST00000350881|THBS4;ENSG00000169231|ENST00000368378|THBS3	ENSG00000113296|ENST00000350881|THBS4	MULTI-MSMS	A375_MHC_IP_R2	2	497.1374206542969	2	496.737814	991.461075	-0.45166	-0.00022436	0.12471	6.1946E-05	-0.32696	-0.00016241	496.7377834715024	64.679	0.91521	65.419	65.054	65.97	0.74023					42	17	4	0	0	0	0.0044674	2	24475	24435;24475		96.367	48.021	1	12247000			37754	3138;7393	27618	27849	36787;36788	36788					-0.03499699724477523
NSDPNLHLL	9	Unmodified	_NSDPNLHLL_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-SECPEP	A375_MHC_IP_R1	1	512.1668090820312	2	511.766906	1021.51926	-0.49575	-0.00025371	0.16503	8.4456E-05	-0.33072	-0.00016925	511.7669545113879	64.385	0.40532	64.385	64.141	64.546	0					14	7	2	0	0	0	0.05021	1	23294	23294		69.105	19.172	1	1558700			37755	4826	27619	27850	36789	36789					0.009359819208270892
NSDPNLHLL	9	Unmodified	_NSDPNLHLL_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1664428710938	2	511.766906	1021.51926	-0.69549	-0.00035593	-0.61728	-0.0003159	-1.3128	-0.00067183	511.7666942377853	63.444	0.66146	64.184	63.885	64.547	0.74022					21	12	2	0	0	0	0.13064	1	24100	24100		47.749	13.347	1	1399900			37756	4826	27619	27850	36790	36790					0.009359819208270892
NSDSNLTTY	9	Unmodified	_NSDSNLTTY_					0	0	0		ROBO1|p.N1089Sfs*2|1|0.06|ENSG00000169855|chr3:78635881-78635882|-/ATGA|frameshift_variant;ROBO1|p.N1088Sfs*50|1|0.03|ENSG00000169855|chr3:78635883-78635884|-/AGTGGCAGTGTATTGTGAAAGC|frameshift_variant;nc|ENSG00000169855|Q9Y6N7-6|ROBO1;nc|ENSG00000169855|Q9Y6N7-5|ROBO1;nc|ENSG00000169855|Q9Y6N7-4|ROBO1;nc|ENSG00000169855|Q9Y6N7-3|ROBO1;ENSG00000169855|ENST00000464233|ROBO1;nc|ENSG00000169855|Q9Y6N7-2|ROBO1	ROBO1|p.N1089Sfs*2|1|0.06|ENSG00000169855|chr3:78635881-78635882|-/ATGA|frameshift_variant	ROBO1|p.N1089Sfs*2|1|0.06|ENSG00000169855|chr3:78635881-78635882|-/ATGA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	508.1826171875	2	507.722361	1013.43017	-0.092679	-4.7055E-05	-0.33729	-0.00017125	-0.42997	-0.00021831	507.72223327767045	38.857	0.35545	38.857	38.577	38.933	0					12	6	2	0	0	0	0.39434	1	13189	13189		24.991	5.734	1	3065600			37757	7442	27620	27851	36791	36791					-0.07600897829399855
NSDSNLTTY	9	Unmodified	_NSDSNLTTY_					0	0	0		ROBO1|p.N1089Sfs*2|1|0.06|ENSG00000169855|chr3:78635881-78635882|-/ATGA|frameshift_variant;ROBO1|p.N1088Sfs*50|1|0.03|ENSG00000169855|chr3:78635883-78635884|-/AGTGGCAGTGTATTGTGAAAGC|frameshift_variant;nc|ENSG00000169855|Q9Y6N7-6|ROBO1;nc|ENSG00000169855|Q9Y6N7-5|ROBO1;nc|ENSG00000169855|Q9Y6N7-4|ROBO1;nc|ENSG00000169855|Q9Y6N7-3|ROBO1;ENSG00000169855|ENST00000464233|ROBO1;nc|ENSG00000169855|Q9Y6N7-2|ROBO1	ROBO1|p.N1089Sfs*2|1|0.06|ENSG00000169855|chr3:78635881-78635882|-/ATGA|frameshift_variant	ROBO1|p.N1089Sfs*2|1|0.06|ENSG00000169855|chr3:78635881-78635882|-/ATGA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	507.708251953125	2	507.722361	1013.43017	-1.0054	-0.00051049	0.35758	0.00018155	-0.64786	-0.00032893	507.72249574910205	38.127	0.46227	38.901	38.636	39.098	0.77451					18	8	3	0	0	0	0.61998	1	13994	13994		13.906	1.3745	1	3474000			37758	7442	27620	27851	36792	36792					-0.07600897829399855
NSDTNQLNY	9	Unmodified	_NSDTNQLNY_					0	0	0			REV__ENST00000473000.2_1_6:3267793-3267943:+|nuORF	REV__ENST00000473000.2_1_6:3267793-3267943:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	535.1326904296875	2	534.73326	1067.45197	-0.57821	-0.00030919	-0.51834	-0.00027717	-1.0966	-0.00058636	534.7330107105385	88.536	0.86506	88.536	88.154	89.019	0					32	16	3	0	0	0	0.46045	1	32465	32465		36.127	7.0454	1	8074600	+		37759	21622	27621	27852	36793	36793					-0.07906093080805476
NSDVEMAEAP	10	Unmodified	_NSDVEMAEAP_					0	0	0		ENSG00000197213|ENST00000586855|ZSCAN5B	ENSG00000197213|ENST00000586855|ZSCAN5B	ENSG00000197213|ENST00000586855|ZSCAN5B	MULTI-MSMS	A375_MHC_IP_R1	1	532.1240234375	2	531.724046	1061.43354	-0.50332	-0.00026763	0.54174	0.00028806	0.038425	2.0432E-05	531.7242984057689	88.554	0.66307	88.554	88.256	88.919	0					31	12	3	0	0	0	0.67512	1	32482	32482		15.248	1.7406	1	5711600			37760	9131	27622	27853	36794	36794					-0.09471971047014449
NSDVSLLNY	9	Unmodified	_NSDVSLLNY_					0	0	0		nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	MULTI-MSMS	A375_MHC_IP_R1	1	1025.38818359375	1	1024.49457	1023.48729	0.28369	0.00029064	-0.48855	-0.00050051	-0.20485	-0.00020987	1024.4939487304653	88.571	0.96552	88.571	88.205	89.171	0					50	18	4	0	0	0	0.0023519	2	32537	32537;32619		140.63	62.484	1	50609000			37761	6651	27623	27854	36795;36796	36795					-0.023514305530056845
NSDVSLLNY	9	Unmodified	_NSDVSLLNY_					0	0	0		nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	MULTI-SECPEP	A375_MHC_IP_R1	1	513.1504516601562	2	512.750921	1023.48729	-0.37792	-0.00019378	-0.34624	-0.00017754	-0.72416	-0.00037131	512.7507185855562	88.586	1.6768	88.586	88.103	89.78	0					83	32	5	0	0	0	0.011236	1	32427	32427		106.94	38.859	1	75602000			37762	6651	27623	27854	36797	36797					-0.023514305530056845
NSDVSLLNY	9	Unmodified	_NSDVSLLNY_					0	0	0		nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	MULTI-MSMS	A375_MHC_IP_R2	2	513.1506958007812	2	512.750921	1023.48729	-0.681	-0.00034918	0.15262	7.8258E-05	-0.52838	-0.00027092	512.7509274323806	87.912	1.4173	88.644	88.116	89.533	0.7318					79	27	4	0	0	0	0.0098926	1	33347	33347		118.07	39.919	1	68467000			37763	6651	27623	27854	36798	36798					-0.023514305530056845
NSDVSLLNY	9	Unmodified	_NSDVSLLNY_					0	0	0		nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	MULTI-MATCH	A375_MHC_IP_R2	2		1	1024.49457	1023.48729	0.10807	0.00011072	-0.17587	-0.00018018	-0.067799	-6.946E-05	1024.494301447217	87.915	1.0116	88.647	88.217	89.228	0.7318	0.038198	0.00021877	NaN	140.63	54	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50233000			37764	6651	27623	27854							-0.023514305530056845
NSDWHLVNY	9	Unmodified	_NSDWHLVNY_					0	0	0		nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9	nc|ENSG00000088387|Q9BZ29-3|DOCK9	nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-MSMS	A375_MHC_IP_R2	2	574.9161376953125	2	574.261988	1146.50942	-0.16519	-9.486E-05	-4.4111	-0.0025331	-4.5763	-0.002628	574.7605844679329	70.39	0.20245	71.124	70.997	71.2	0.73421					5	3	2	0	0	0	0.57432	1	26679	26679		16.149	1.3108	1	1174500			37765	1892	27624	27855	36799	36799					-0.05797206084571371
NSEEMKEAYY	10	Unmodified	_NSEEMKEAYY_					0	0	0		ENST00000581302.5_1_18:21033283-21057068:+|nuORF;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581339.1_1_18:21053400-21057068:+|nuORF	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	632.992919921875	2	632.263536	1262.51252	-0.70402	-0.00044513	0.55128	0.00034856	-0.15274	-9.657E-05	632.2640180802237	33.266	0.40507	33.266	33.04	33.445	0					11	7	2	0	0	0	0.64262	1	10866	10866		29.281	13.132	1	3090600			37766	2323	27625	27856	36800	36800					-0.10823743812716202
NSEEMKEAYY	10	Unmodified	_NSEEMKEAYY_					0	0	0		ENST00000581302.5_1_18:21033283-21057068:+|nuORF;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581339.1_1_18:21053400-21057068:+|nuORF	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	632.9920654296875	2	632.263536	1262.51252	-0.85549	-0.00054089	0.43373	0.00027423	-0.42175	-0.00026666	632.2638363968842	32.655	0.4068	33.392	33.162	33.569	0.73692					13	7	2	0	0	0	0.047329	1	11622	11622		83.278	62.863	1	4729800			37767	2323	27625	27856	36801	36801					-0.10823743812716202
NSELGAACSDY	11	Unmodified	_NSELGAACSDY_					0	0	0			REV__ENSG00000122970|ENST00000242591|IFT81	REV__ENSG00000122970|ENST00000242591|IFT81	MULTI-MSMS	A375_MHC_IP_R1	1	565.1634521484375	2	565.226953	1128.43935	-0.42163	-0.00023832	-0.591	-0.00033405	-1.0126	-0.00057237	565.2263491196791	77.261	0.91432	77.261	76.981	77.895	0					22	17	2	0	0	0	0.72565	2	28328	28216;28328		13.042	1.4208	1	1381800	+		37768	18226	27626	27857	36802;36803	36803					-0.11972872535352508
NSELGSETRY	10	Unmodified	_NSELGSETRY_					0	0	0		ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-7|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1	ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-8|YY1AP1	ENST00000442834.6_1_1:155629450-155640310:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	578.6666870117188	2	578.267467	1154.52038	-0.41769	-0.00024153	0.098057	5.6703E-05	-0.31963	-0.00018483	578.2674130582496	26.831	0.81786	27.491	27.313	28.131	0.65992					50	15	4	0	0	0	3.3019E-05	1	9098	9098		168.9	84.38	1	66177000			37769	11999;14719	27627	27858	36804	36804					-0.05069848500943408
NSELIMDQY	9	Oxidation (M)	_NSELIM(Oxidation (M))DQY_		NSELIM(1)DQY		NSELIM(50)DQY	0	0	1		ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	MULTI-MSMS	A375_MHC_IP_R1	1	565.1476440429688	2	564.747521	1127.48049	-0.42613	-0.00024066	0.22369	0.00012633	-0.20244	-0.00011433	564.7475145015311	57.871	0.60905	57.871	57.568	58.177	0					30	11	3	0	0	0	0.10622	1	20769	20769		49.554	30.297	1	4078700			37770	1078	27628	27859	36805	36805		10			-0.07815111495892779
NSELIMDQY	9	Oxidation (M)	_NSELIM(Oxidation (M))DQY_		NSELIM(1)DQY		NSELIM(65)DQY	0	0	1		ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	MULTI-MSMS	A375_MHC_IP_R2	2	565.1464233398438	2	564.747521	1127.48049	-0.85349	-0.00048201	0.14928	8.4305E-05	-0.70421	-0.0003977	564.7474749908201	57.209	0.6608	57.959	57.612	58.273	0.74979					29	12	3	0	0	0	0.04699	1	21613	21613		65.474	38.59	1	4753100			37771	1078	27628	27859	36806	36806		10			-0.07815111495892779
NSELIMDQY	9	Unmodified	_NSELIMDQY_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	MULTI-MSMS	A375_MHC_IP_R1	1	557.1494750976562	2	556.750064	1111.48558	-0.4584	-0.00025521	-0.026406	-1.4701E-05	-0.4848	-0.00026991	556.750028791548	79.323	0.66676	79.323	79.061	79.728	0					24	12	3	0	0	0	0.12748	1	28946	28946		45.74	26.483	1	3325700			37772	1078	27628	27860	36807	36807					-0.06570807633261211
NSELIMDQY	9	Unmodified	_NSELIMDQY_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	MULTI-SECPEP	A375_MHC_IP_R2	2	557.1499633789062	2	556.750064	1111.48558	-0.70454	-0.00039225	0.079129	4.4055E-05	-0.62541	-0.0003482	556.7501746384395	78.703	0.55891	79.448	79.134	79.693	0.74474					26	10	4	0	0	0	0.20451	1	29840	29840		57.722	46.898	1	3846800			37773	1078	27628	27860	36808	36808					-0.06570807633261211
NSELLNDRY	9	Unmodified	_NSELLNDRY_					0	0	0		nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	MULTI-SECPEP	A375_MHC_IP_R1	1	562.6724853515625	2	562.272552	1122.53055	-0.67737	-0.00038087	0.36904	0.0002075	-0.30833	-0.00017337	562.2726152448348	41.731	1.1679	41.731	41.419	42.587	0					40	22	4	0	0	0	0.011256	1	14437	14437		121.35	56.111	1	16218000			37774	2592	27629	27861	36809	36809					-0.025812407757030087
NSELLNDRY	9	Unmodified	_NSELLNDRY_					0	0	0		nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	MULTI-MSMS	A375_MHC_IP_R2	2	562.1686401367188	2	562.272552	1122.53055	-0.80806	-0.00045435	-0.31657	-0.000178	-1.1246	-0.00063235	562.2722875147309	40.979	1.0658	41.753	41.489	42.555	0.77451					39	20	3	0	0	0	0.65637	1	15371	15371		15.248	5.8654	1	18806000			37775	2592	27629	27861	36810	36810					-0.025812407757030087
NSELLNDRY	9	Unmodified	_NSELLNDRY_					0	0	0		nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	562.272552	1122.53055	-0.80806	-0.00045435	-0.31657	-0.000178	-1.1246	-0.00063235	562.2722875147309	40.979	1.0658	41.753	41.489	42.555	0.77451	0.010806	-0.00034108	NaN	159.1	39	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18806000			37776	2592	27629	27861							-0.025812407757030087
NSELSCQLY	9	Unmodified	_NSELSCQLY_					0	0	0		nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS;ENST00000581920.1_1_18:667730-672994:+|nuORF;nc|ENSG00000176890|P04818-3|TYMS;chr18:657947-669072|467|17.35|0.94|4.21|+|ENST00000323250|TYMS,TYMS	nc|ENSG00000176890|P04818-2|TYMS	nc|ENSG00000176890|P04818-2|TYMS	MULTI-MSMS	A375_MHC_IP_R1	1	529.1369018554688	2	528.736957	1055.45936	-0.51613	-0.0002729	-0.49453	-0.00026147	-1.0107	-0.00053437	528.737118171753	77.493	1.7245	77.493	77.032	78.756	0					86	33	5	0	0	0	0.11715	1	28442	28442		47.594	11.467	1	7749800			37777	8037	27630	27862	36811	36811					-0.06615076804746423
NSELSCQLY	9	Unmodified	_NSELSCQLY_					0	0	0		nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS;ENST00000581920.1_1_18:667730-672994:+|nuORF;nc|ENSG00000176890|P04818-3|TYMS;chr18:657947-669072|467|17.35|0.94|4.21|+|ENST00000323250|TYMS,TYMS	nc|ENSG00000176890|P04818-2|TYMS	nc|ENSG00000176890|P04818-2|TYMS	MULTI-SECPEP	A375_MHC_IP_R2	2	529.1373901367188	2	528.736957	1055.45936	-0.54575	-0.00028856	-0.39786	-0.00021036	-0.94361	-0.00049892	528.7369766800289	76.777	1.5252	77.517	77.199	78.724	0.74052					83	29	4	0	0	0	0.016309	1	29106	29106		103.35	63.404	1	9175100			37778	8037	27630	27862	36812	36812					-0.06615076804746423
NSENENSF	8	Unmodified	_NSENENSF_					0	0	0			REV__ENSG00000163781|ENST00000260810|TOPBP1	REV__ENSG00000163781|ENST00000260810|TOPBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	470.1927490234375	2	470.685778	939.357004	-0.38594	-0.00018166	-0.19661	-9.2541E-05	-0.58255	-0.0002742	470.68559224957386	64.068	0.7094	64.068	63.684	64.393	0					28	13	3	0	0	0	0.972	1	23200	23200		13.508	1.8676	1	3894300	+		37779	20409	27631	27863	36813	36813					-0.11510026551991359
NSEPEKRPSFY	11	Unmodified	_NSEPEKRPSFY_					0	0	0		ENSG00000134853|ENST00000257290|PDGFRA	ENSG00000134853|ENST00000257290|PDGFRA	ENSG00000134853|ENST00000257290|PDGFRA	MULTI-MSMS	A375_MHC_IP_R1	1	678.226318359375	2	677.325316	1352.63608	-0.5205	-0.00035255	0.16154	0.00010942	-0.35896	-0.00024313	677.3251469801374	62.451	0.41084	62.451	62.249	62.66	0					17	7	3	0	0	0	0.73078	1	22580	22580		8.1555	2.4237	1	1947400			37780	4616	27632	27864	36814	36814					-0.02613324650087634
NSEPETLEY	9	Unmodified	_NSEPETLEY_					0	0	0		ENSG00000077044|ENST00000264057|DGKD;nc|ENSG00000077044|Q16760-2|DGKD;ENST00000490764.5_1_2:234327938-234366271:+|nuORF	ENSG00000077044|ENST00000264057|DGKD	ENSG00000077044|ENST00000264057|DGKD	MULTI-MSMS	A375_MHC_IP_R1	1	541.6377563476562	2	541.237844	1080.46113	-0.75373	-0.00040794	0.065081	3.5224E-05	-0.68864	-0.00037272	541.2378197869426	53.153	0.70904	53.153	52.796	53.505	0					23	13	2	0	0	0	0.094655	1	18916	18916		51.63	4.7089	1	4663200			37781	1643	27633	27865	36815	36815					-0.07587744515149097
NSEPETLEY	9	Unmodified	_NSEPETLEY_					0	0	0		ENSG00000077044|ENST00000264057|DGKD;nc|ENSG00000077044|Q16760-2|DGKD;ENST00000490764.5_1_2:234327938-234366271:+|nuORF	ENSG00000077044|ENST00000264057|DGKD	ENSG00000077044|ENST00000264057|DGKD	MULTI-MSMS	A375_MHC_IP_R2	2	541.6690673828125	2	541.237844	1080.46113	-1.2855	-0.00069574	0.56282	0.00030462	-0.72263	-0.00039112	541.2380813820091	52.507	0.70717	53.259	52.932	53.639	0.75225					29	13	3	0	0	0	0.12771	1	19818	19818		45.7	21.026	1	5634400			37782	1643	27633	27865	36816	36816					-0.07587744515149097
NSEQYNTLNS	10	Unmodified	_NSEQYNTLNS_					0	0	0			REV__ENSG00000125409|ENST00000395930|TEKT3	REV__ENSG00000125409|ENST00000395930|TEKT3	MULTI-MSMS	A375_MHC_IP_R1	1	585.6565551757812	2	585.257099	1168.49965	-0.32751	-0.00019167	-0.080106	-4.6883E-05	-0.40761	-0.00023856	585.2569116583074	27.457	0.35347	27.457	27.28	27.634	0					12	6	2	0	0	0	0.47255	1	8372	8372		29.841	11.467	1	2654200	+		37783	18340	27634	27866	36817	36817					-0.0778643888058923
NSESCTIGDD	10	Unmodified	_NSESCTIGDD_					0	0	0		ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	MSMS	A375_MHC_IP_R2	2	520.732421875	2	520.695486	1039.37642	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.771	1	84.511	84.011	85.011	0.73962								0	0	0	0.15591	1	31842	31842		1.6526	0	1				37784	7335	27635	27867	36818	36818					-0.1416943832339257
NSFLDQEYRK	10	Unmodified	_NSFLDQEYRK_					0	0	0		nc|ENSG00000149970|Q8WXI2-4|CNKSR2;nc|ENSG00000149970|Q8WXI2-2|CNKSR2;nc|ENSG00000149970|Q8WXI2-5|CNKSR2;ENSG00000149970|ENST00000379510|CNKSR2	nc|ENSG00000149970|Q8WXI2-4|CNKSR2	nc|ENSG00000149970|Q8WXI2-4|CNKSR2	MULTI-MSMS	A375_MHC_IP_R1	1	433.6176452636719	3	433.882448	1298.62551	-0.23051	-0.00010002	0.50967	0.00022114	0.27916	0.00012112	433.88261821792105	23.252	0.70965	23.252	22.773	23.483	0					29	13	3	0	0	0	0.60608	1	6343	6343		13.519	0.66272	1	32960000			37785	5835	27636	27868	36819	36819					-0.011853073045358542
NSFLQNTED	9	Unmodified	_NSFLQNTED_					0	0	0		nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16	nc|ENSG00000041515|Q9Y6X6|MYO16	nc|ENSG00000041515|Q9Y6X6|MYO16	MULTI-MSMS	A375_MHC_IP_R1	1	534.6796264648438	2	534.235635	1066.45672	-0.70661	-0.00037749	-0.70498	-0.00037662	-1.4116	-0.00075412	534.2353321294315	61.388	0.51022	61.388	61.075	61.585	0					19	9	3	0	0	0	0.71416	1	22053	22053		5.7319	0.97584	1	5629800			37786	1169	27637	27869	36820	36820					-0.07385208938035248
NSFPENFVF	9	Unmodified	_NSFPENFVF_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-MSMS	A375_MHC_IP_R1	1	550.67431640625	2	550.756007	1099.49746	-0.57454	-0.00031643	-0.47259	-0.00026028	-1.0471	-0.00057671	550.7562253943133	60.948	0.45678	60.948	60.669	61.126	0					16	8	3	0	0	0	0.51106	1	21965	21965		19.257	0	1	1447800			37787	8061	27638	27870	36821	36821					-0.04830822827761949
NSFTVVPKL	9	Unmodified	_NSFTVVPKL_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MSMS	A375_MHC_IP_R1	1	502.8716735839844	2	502.792392	1003.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.12	1	88.12	87.62	88.62	0								0	0	0	0.12988	1	32344	32344		32.786	3.7041	1				37788	8884	27639	27871	36822	36822					0.06858930965665877
NSFYREASL	9	Unmodified	_NSFYREASL_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14;ENST00000495381.5_1_3:123675585-123680164:-|nuORF;ENST00000477268.5_1_3:123667910-123680164:-|nuORF	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MSMS	A375_MHC_IP_R2	2	543.7097778320312	2	543.764363	1085.51417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.614	1	38.387	37.887	38.887	0.77318								0	0	0	0.14792	1	13776	13776		24.991	2.2547	1				37789	14778	27640	27872	36823	36823					-0.025163219418118388
NSGDDPEDEDE	11	Unmodified	_NSGDDPEDEDE_					0	0	0			REV__CKAP5|p.G838E|1|0.38|ENSG00000175216|chr11:46778520-46778520|C/T|missense_variant	REV__CKAP5|p.G838E|1|0.38|ENSG00000175216|chr11:46778520-46778520|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	611.2067260742188	2	611.204926	1220.3953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.355	1	93.355	92.855	93.855	0								0	0	0	0.16265	1	34316	34316		4.897	1.6157	1		+		37790	15793	27641	27873	36824	36824					-0.20608230218658719
NSGSGLSHDY	10	Unmodified	_NSGSGLSHDY_					0	0	0		nc|ENSG00000139990|Q96JK2-2|DCAF5;nc|ENSG00000139990|Q96JK2-3|DCAF5;ENSG00000139990|ENST00000341516|DCAF5	nc|ENSG00000139990|Q96JK2-2|DCAF5	nc|ENSG00000139990|Q96JK2-2|DCAF5	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1195068359375	2	518.720153	1035.42575	-0.6671	-0.00034604	-0.32143	-0.00016673	-0.98853	-0.00051277	518.7198708345758	64.698	0.61127	65.438	65.157	65.768	0.74022					21	11	3	0	0	0	0.93194	1	24506	24506		5.7319	5.7319	1	2973500			37791	5123	27642	27874	36825	36825					-0.09054362252277315
NSGSGLSHDY	10	Unmodified	_NSGSGLSHDY_					0	0	0		nc|ENSG00000139990|Q96JK2-2|DCAF5;nc|ENSG00000139990|Q96JK2-3|DCAF5;ENSG00000139990|ENST00000341516|DCAF5	nc|ENSG00000139990|Q96JK2-2|DCAF5	nc|ENSG00000139990|Q96JK2-2|DCAF5	MULTI-MATCH	A375_MHC_IP_R1	1		2	518.720153	1035.42575	-0.62493	-0.00032416	-0.24219	-0.00012563	-0.86711	-0.00044979	518.7199619026288	65.283	0.61079	65.283	64.954	65.565	0	-0.077802	4.1361E-05	NaN	5.7319	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3421800			37792	5123	27642	27874							-0.09054362252277315
NSGSVLDYFS	10	Unmodified	_NSGSVLDYFS_					0	0	0		ENST00000556044.5_1_14:71060086-71067354:-|nuORF;ENST00000556423.1_1_14:71063310-71067354:-|nuORF;ENST00000553611.5_1_14:71060082-71067354:-|nuORF;ENST00000554870.5_1_14:71059985-71067354:-|nuORF;ENST00000556495.5_1_14:71059591-71067354:-|nuORF;nc|ENSG00000133997|O75586-3|MED6;ENSG00000133997|ENST00000256379|MED6;nc|ENSG00000133997|O75586-2|MED6	ENST00000556044.5_1_14:71060086-71067354:-|nuORF	ENST00000556044.5_1_14:71060086-71067354:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	544.1423950195312	2	544.748379	1087.4822	-0.63838	-0.00034776	-1.7896	-0.00097488	-2.428	-0.0013226	545.2480660736713	27.33	0.45499	27.33	27.179	27.634	0					10	8	2	0	0	0	0.92076	1	8387	8387		14.405	7.1161	1	1097900			37793	4541	27643	27875	36826	36826					-0.05803734415599138
NSGSVLDYFS	10	Unmodified	_NSGSVLDYFS_					0	0	0		ENST00000556044.5_1_14:71060086-71067354:-|nuORF;ENST00000556423.1_1_14:71063310-71067354:-|nuORF;ENST00000553611.5_1_14:71060082-71067354:-|nuORF;ENST00000554870.5_1_14:71059985-71067354:-|nuORF;ENST00000556495.5_1_14:71059591-71067354:-|nuORF;nc|ENSG00000133997|O75586-3|MED6;ENSG00000133997|ENST00000256379|MED6;nc|ENSG00000133997|O75586-2|MED6	ENST00000556044.5_1_14:71060086-71067354:-|nuORF	ENST00000556044.5_1_14:71060086-71067354:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	544.748379	1087.4822	-1.0955	-0.00059674	-0.55701	-0.00030343	-1.6525	-0.00090018	544.7482772104829	26.788	0.30618	27.448	27.262	27.568	0.65992	0.058927	0.00041939	NaN	22.658	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1250700			37794	4541	27643	27875							-0.05803734415599138
NSHLAQHW	8	Unmodified	_NSHLAQHW_					0	0	0		nc|ENSG00000198464|Q8WV37-3|ZNF480;nc|ENSG00000198464|Q8WV37-2|ZNF480;ENSG00000198464|ENST00000595962|ZNF480	nc|ENSG00000198464|Q8WV37-3|ZNF480	nc|ENSG00000198464|Q8WV37-3|ZNF480	MSMS	A375_MHC_IP_R2	2	496.59344482421875	2	496.738483	991.462413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.699	1	53.451	52.951	53.951	0.75131								0	0	0	0.16876	1	19869	19869		12.532	2.3482	1				37795	9272	27644	27876	36827	36827					-0.03366020845055573
NSHNMELY	8	Unmodified	_NSHNMELY_					0	0	0		nc|ENSG00000131023|O95835-2|LATS1;ENST00000542747.5_1_6:149997344-150023094:-|nuORF;ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENSG00000131023|ENST00000543571|LATS1	nc|ENSG00000131023|O95835-2|LATS1	nc|ENSG00000131023|O95835-2|LATS1	MULTI-MSMS	A375_MHC_IP_R1	1	504.1873474121094	2	504.216192	1006.41783	-0.38885	-0.00019607	1.4968	0.00075473	1.108	0.00055866	504.2170069031727	64.167	0.45493	64.167	63.939	64.393	0					13	8	2	0	0	0	0.72008	1	23206	23206		28.487	10.352	1	587740			37796	4301	27645	27877	36828	36828					-0.0851221277341665
NSHNMELY	8	Unmodified	_NSHNMELY_					0	0	0		nc|ENSG00000131023|O95835-2|LATS1;ENST00000542747.5_1_6:149997344-150023094:-|nuORF;ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENSG00000131023|ENST00000543571|LATS1	nc|ENSG00000131023|O95835-2|LATS1	nc|ENSG00000131023|O95835-2|LATS1	MSMS	A375_MHC_IP_R2	2	504.1873779296875	2	504.216192	1006.41783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.262	1	64.003	63.503	64.503	0.7407								0	0	0	0.16876	1	23982	23982		18.135	1.1927	1				37797	4301	27645	27877	36829	36829					-0.0851221277341665
NSIDSQSMF	9	Unmodified	_NSIDSQSMF_					0	0	0			REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	MSMS	A375_MHC_IP_R1	1	514.6204223632812	2	514.721307	1027.42806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.225	1	66.225	65.725	66.725	0								0	0	0	0.1493	1	23977	23977		22.736	3.4793	1		+		37798	22593	27646	27878	36830	36830					-0.08455649838811041
NSIKELNERW	10	Unmodified	_NSIKELNERW_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	A375_MHC_IP_R1	1	430.626220703125	3	430.226326	1287.65715	-0.48879	-0.00021029	0.23658	0.00010178	-0.2522	-0.0001085	430.2264232783941	41.594	0.66508	41.594	41.317	41.982	0					37	12	4	0	0	0	0.0072551	1	14332	14332		104.94	82.835	1	42809000			37799	9183	27647	27879	36831	36831					0.02482685449422206
NSIKELNERW	10	Unmodified	_NSIKELNERW_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	A375_MHC_IP_R1	1	645.235595703125	2	644.835851	1287.65715	-0.78123	-0.00050376	0.31593	0.00020373	-0.46529	-0.00030004	644.8360339475428	41.579	0.56347	41.579	41.317	41.88	0					28	10	4	0	0	0	3.2616E-05	1	14342	14342		211.53	171.29	1	22846000			37800	9183	27647	27879	36832	36832					0.02482685449422206
NSIKELNERW	10	Unmodified	_NSIKELNERW_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	A375_MHC_IP_R2	2	430.96051025390625	3	430.226326	1287.65715	-0.41207	-0.00017728	0.026569	1.1431E-05	-0.3855	-0.00016585	430.22631858758854	40.766	1.0656	41.541	41.285	42.35	0.77451					41	20	4	0	0	0	0.016596	1	15089	15089		87.878	70.015	1	40576000			37801	9183	27647	27879	36833	36833					0.02482685449422206
NSIKELNERW	10	Unmodified	_NSIKELNERW_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	A375_MHC_IP_R2	2	645.2357177734375	2	644.835851	1287.65715	-0.88487	-0.00057059	0.11252	7.2554E-05	-0.77235	-0.00049804	644.835923465363	40.79	0.45906	41.565	41.335	41.794	0.77451					28	8	4	0	0	0	0.00081399	2	15101	15101;15150		175.66	142.87	1	24929000			37802	9183	27647	27879	36834;36835	36834					0.02482685449422206
NSILEQLF	8	Unmodified	_NSILEQLF_					0	0	0			REV__nc|ENSG00000183199|Q58FF7|HSP90AB3P	REV__nc|ENSG00000183199|Q58FF7|HSP90AB3P	MSMS	A375_MHC_IP_R1	1	482.1867370605469	2	482.260925	962.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.701	1	64.701	64.201	65.201	0								0	0	0	0.16876	1	23415	23415		22.736	2.2827	1		+		37803	27399	27648	27880	36836	36836					0.024543651776298248
NSILPPPVIFK	11	Unmodified	_NSILPPPVIFK_					0	0	0		PTPRO|p.T77I|1|0.27|ENSG00000151490|chr12:15484128-15484128|C/T|missense_variant	PTPRO|p.T77I|1|0.27|ENSG00000151490|chr12:15484128-15484128|C/T|missense_variant	PTPRO|p.T77I|1|0.27|ENSG00000151490|chr12:15484128-15484128|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	408.9521789550781	3	408.916541	1223.72779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.381	1	40.381	39.881	40.881	0								0	0	0	0.16191	1	13872	13872		8.7518	2.5599	1				37804	15252	27649	27881	36837	36837					0.12488010505012426
NSILPPPVIFK	11	Unmodified	_NSILPPPVIFK_					0	0	0		PTPRO|p.T77I|1|0.27|ENSG00000151490|chr12:15484128-15484128|C/T|missense_variant	PTPRO|p.T77I|1|0.27|ENSG00000151490|chr12:15484128-15484128|C/T|missense_variant	PTPRO|p.T77I|1|0.27|ENSG00000151490|chr12:15484128-15484128|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	408.9520568847656	3	408.916541	1223.72779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.635	1	40.41	39.91	40.91	0.77451								0	0	0	0.16124	1	14643	14643		12.228	3.4758	1				37805	15252	27649	27881	36838	36838					0.12488010505012426
NSIVVFFWILN	11	Unmodified	_NSIVVFFWILN_					0	0	0		ENST00000262455.6_1_9:102744343-102744541:-|nuORF	ENST00000262455.6_1_9:102744343-102744541:-|nuORF	ENST00000262455.6_1_9:102744343-102744541:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	451.6513977050781	3	451.251813	1350.73361	-0.19248	-8.6856E-05	-0.5271	-0.00023785	-0.71957	-0.00032471	451.2515940875516	60.891	0.55973	60.891	60.566	61.126	0					18	10	3	0	0	0	0.73388	1	21917	21917		5.1984	0.30613	1	2638800			37806	10304	27650	27882	36839	36839					0.07227109016730537
NSKENRWY	8	Unmodified	_NSKENRWY_					0	0	0		ENST00000572757.5_2_16:3493747-3497509:+|nuORF	ENST00000572757.5_2_16:3493747-3497509:+|nuORF	ENST00000572757.5_2_16:3493747-3497509:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	548.677490234375	2	548.762155	1095.50976	-0.94043	-0.00051607	-0.8089	-0.00044389	-1.7493	-0.00095996	548.7617637857181	66.251	1.072	66.988	66.424	67.496	0.73707					17	14	2	0	0	0	0.75805	1	25199	25199		18.135	0	1	2101900			37807	13621	27651	27883	36840	36840					-0.034177863647073536
NSLFQEDWT	9	Unmodified	_NSLFQEDWT_					0	0	0		ENSG00000168434|ENST00000307149|COG7;COG7|p.P454S|1|0.39|ENSG00000168434|chr16:23413497-23413497|G/A|missense_variant;COG7|p.P454L|1|0.43|ENSG00000168434|chr16:23413496-23413496|G/A|missense_variant	ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	MULTI-MSMS	A375_MHC_IP_R1	1	570.6533813476562	2	570.253828	1138.4931	-0.22674	-0.0001293	-0.14395	-8.2086E-05	-0.37068	-0.00021138	570.2537084334298	105	0.6075	105	104.59	105.2	0					25	11	3	0	0	0	0.51106	1	38590	38590		19.257	7.6167	1	1240300			37808	7301	27652	27884	36841	36841					-0.07060332041328365
NSLHAVAK	8	Unmodified	_NSLHAVAK_					0	0	0			REV__ENST00000479866.5_1_12:48143124-48152369:-|nuORF	REV__ENST00000479866.5_1_12:48143124-48152369:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	838.77294921875	1	839.473377	838.466101	-0.68273	-0.00057314	-0.22084	-0.00018539	-0.90358	-0.00075853	839.4730447584741	30.238	0.50378	30.238	29.999	30.503	0					17	9	2	0	0	0	0.972	1	9628	9628		4.756	2.9118	1	11511000	+		37809	16731	27653	27885	36842	36842					0.040406489287988734
NSLQHILLW	9	Unmodified	_NSLQHILLW_					0	0	0			REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	562.6724853515625	2	562.316566	1122.61858	-0.55884	-0.00031425	0.44949	0.00025275	-0.10936	-6.1493E-05	562.3165519114926	41.912	0.35634	41.912	41.725	42.082	0					13	6	3	0	0	0	0.75466	1	14437	14437		12.532	0	1	2735400	+		37810	16554	27654	27886	36843	36843					0.06217424605574706
NSLRCKLVHEY	11	Unmodified	_NSLRCKLVHEY_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-MSMS	A375_MHC_IP_R2	2	454.6369323730469	3	454.571328	1360.69215	-0.43995	-0.00019999	-0.08833	-4.0152E-05	-0.52828	-0.00024014	454.57133073813037	35.552	0.40496	36.315	36.132	36.537	0.76338					14	7	3	0	0	0	0.72773	1	12913	12913		11.065	2.3135	1	1759800	+		37811	21760	27655	27887	36844	36844					0.02623604985728889
NSLSIKNVVY	10	Unmodified	_NSLSIKNVVY_					0	0	0		ENST00000498108.5_1_1:225685479-225688852:-|nuORF	ENST00000498108.5_1_1:225685479-225688852:-|nuORF	ENST00000498108.5_1_1:225685479-225688852:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	379.58526611328125	3	379.548518	1135.62372	-0.43604	-0.0001655	1.955	0.00074202	1.519	0.00057652	379.549037577046	36.772	0.40751	37.543	37.258	37.665	0.7709					14	7	3	0	0	0	0.71364	1	13313	13313		6.1918	0.78914	1	1489300			37812	12756	27656	27888	36845	36845					0.06133683677535373
NSLSIKNVVY	10	Unmodified	_NSLSIKNVVY_					0	0	0		ENST00000498108.5_1_1:225685479-225688852:-|nuORF	ENST00000498108.5_1_1:225685479-225688852:-|nuORF	ENST00000498108.5_1_1:225685479-225688852:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	379.548518	1135.62372	0.31328	0.00011891	1.8344	0.00069623	2.1476	0.00081513	379.5491950530816	37.764	0.3567	37.764	37.556	37.913	0	0.11057	-2.3949E-05	NaN	6.1918	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1325600			37813	12756	27656	27888							0.06133683677535373
NSMQLARSSF	10	Unmodified	_NSMQLARSSF_					0	0	0		ENST00000515558.1_1_5:126394507-126407313:-|nuORF;ENSG00000164241|ENST00000296662|C5orf63;nc|nan|A6NC05|C5orf63	ENST00000515558.1_1_5:126394507-126407313:-|nuORF	ENST00000515558.1_1_5:126394507-126407313:-|nuORF	MSMS	A375_MHC_IP_R2	2	570.6734619140625	2	570.776948	1139.53934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.034	1	49.792	49.292	50.292	0.75737								0	0	0	0.1524	1	18419	18419		13.042	0.80181	1				37814	6807	27657	27889	36846	36846					-0.02484590410904275
NSNIQAKGVRS	11	Unmodified	_NSNIQAKGVRS_					0	0	0		ENST00000566016.5_1_16:46637844-46655271:-|nuORF;ENSG00000171241|ENST00000303383|SHCBP1	ENST00000566016.5_1_16:46637844-46655271:-|nuORF	ENST00000566016.5_1_16:46637844-46655271:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	586.6487426757812	2	587.320368	1172.62618	-0.4315	-0.00025343	3.312	0.0019452	2.8805	0.0016918	587.320716754305	43.332	0.40557	44.105	43.876	44.282	0.7724					9	7	2	0	0	0	0.88813	1	16128	16128		19.362	0	1	1561700			37815	7587	27658	27890	36847	36847					0.04677532135201545
NSNLTDNQY	9	Unmodified	_NSNLTDNQY_					0	0	0		ENSG00000260314|ENST00000569591|MRC1	ENSG00000260314|ENST00000569591|MRC1	ENSG00000260314|ENST00000569591|MRC1	MULTI-SECPEP	A375_MHC_IP_R2	2	535.132568359375	2	534.73326	1067.45197	-0.72415	-0.00038723	-0.019772	-1.0573E-05	-0.74393	-0.0003978	534.733215336213	87.868	0.75909	88.6	88.166	88.925	0.7318					32	14	3	0	0	0	0.35487	1	33386	33386		43.858	0	1	7548700			37816	9931	27659	27891	36848	36848					-0.07906093080805476
NSPLSLYAAV	10	Unmodified	_NSPLSLYAAV_					0	0	0			REV__ENSG00000135476|ENST00000257934|ESPL1	REV__ENSG00000135476|ENST00000257934|ESPL1	MSMS	A375_MHC_IP_R2	2	517.55908203125	2	517.779482	1033.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.337	1	85.075	84.575	85.575	0.73753								0	0	0	0.15105	1	32058	32058		15.847	1.0089	1		+		37817	18857	27660	27892	36849	36849					0.028980367233543802
NSPLVSRL	8	Unmodified	_NSPLVSRL_					0	0	0		nc|ENSG00000146701|P40926-2|MDH2;ENSG00000146701|ENST00000315758|MDH2;ENST00000461665.5_1_7:75677478-75687456:+|nuORF	nc|ENSG00000146701|P40926-2|MDH2	nc|ENSG00000146701|P40926-2|MDH2	MULTI-SECPEP	A375_MHC_IP_R1	1	443.6612243652344	2	443.261259	884.507966	0.13628	6.0408E-05	-0.39749	-0.00017619	-0.26121	-0.00011578	443.26104936568595	47.918	1.1623	47.918	47.567	48.729	0					50	22	4	0	0	0	0.79439	1	16833	16833		36.506	11.107	1	14142000			37818	5632	27661	27893	36850	36850					0.0610920461731439
NSPLVSRL	8	Unmodified	_NSPLVSRL_					0	0	0		nc|ENSG00000146701|P40926-2|MDH2;ENSG00000146701|ENST00000315758|MDH2;ENST00000461665.5_1_7:75677478-75687456:+|nuORF	nc|ENSG00000146701|P40926-2|MDH2	nc|ENSG00000146701|P40926-2|MDH2	MULTI-MSMS	A375_MHC_IP_R2	2	443.66119384765625	2	443.261259	884.507966	-0.16336	-7.2411E-05	-0.079388	-3.5189E-05	-0.24275	-0.0001076	443.2612482418174	46.979	0.71174	47.741	47.412	48.123	0.76128					36	13	4	0	0	0	0.62652	1	17548	17548		43.772	14.691	1	19454000			37819	5632	27661	27893	36851	36851					0.0610920461731439
NSPRFDFT	8	Unmodified	_NSPRFDFT_					0	0	0		nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;ENST00000398792.3_1_10:73483820-73501738:+|nuORF	nc|ENSG00000107736|Q9H251-4|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-SECPEP	A375_MHC_IP_R2	2	491.6444091796875	2	492.232699	982.450845	-1.1211	-0.00055183	0.66983	0.00032971	-0.45124	-0.00022212	492.2329701322236	37.095	0.40456	37.866	37.716	38.12	0.7709					12	7	2	0	0	0	0.972	1	13554	13554		10.074	10.074	1	1799200			37820	2753	27662	27894	36852	36852					-0.04108262659042339
NSPRFDFT	8	Unmodified	_NSPRFDFT_					0	0	0		nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;ENST00000398792.3_1_10:73483820-73501738:+|nuORF	nc|ENSG00000107736|Q9H251-4|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MATCH	A375_MHC_IP_R1	1		2	492.232699	982.450845	-0.52177	-0.00025683	0.15054	7.4103E-05	-0.37122	-0.00018273	492.2330130149321	37.914	0.50842	37.914	37.71	38.218	0	0.024118	-0.00040083	NaN	6.2058	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1882900			37821	2753	27662	27894							-0.04108262659042339
NSREEEDP	8	Unmodified	_NSREEEDP_					0	0	0		ENST00000335154.9_1_12:50036874-50037087:-|nuORF	ENST00000335154.9_1_12:50036874-50037087:-|nuORF	ENST00000335154.9_1_12:50036874-50037087:-|nuORF	MSMS	A375_MHC_IP_R2	2	488.127685546875	2	488.204335	974.394118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.2	1	103.96	103.46	104.46	0.76428								0	0	0	0.16876	1	39086	39086		16.942	5.8278	1				37822	10803	27663	27895	36853	36853					-0.0941035500623002
NSRPPLQW	8	Unmodified	_NSRPPLQW_					0	0	0		ENSG00000144843|ENST00000357003|ADPRH;ENST00000471850.1_1_3:119298364-119306722:+|nuORF	ENSG00000144843|ENST00000357003|ADPRH	ENSG00000144843|ENST00000357003|ADPRH	MULTI-MSMS	A375_MHC_IP_R1	1	499.66424560546875	2	499.264333	996.514114	-0.34096	-0.00017023	0.43428	0.00021682	0.093325	4.6594E-05	499.26448065269716	54.714	0.6097	54.714	54.415	55.025	0					24	11	3	0	0	0	0.23934	1	19530	19530		63.961	29.559	1	4772300			37823	5521	27664	27896	36854	36854					0.015717228488369983
NSRPPLQW	8	Unmodified	_NSRPPLQW_					0	0	0		ENSG00000144843|ENST00000357003|ADPRH;ENST00000471850.1_1_3:119298364-119306722:+|nuORF	ENSG00000144843|ENST00000357003|ADPRH	ENSG00000144843|ENST00000357003|ADPRH	MULTI-MSMS	A375_MHC_IP_R2	2	499.6643371582031	2	499.264333	996.514114	-0.96833	-0.00048345	0.33793	0.00016872	-0.63039	-0.00031473	499.2643938588302	53.796	0.61476	54.547	54.301	54.916	0.75105					24	11	3	0	0	0	0.16884	1	20314	20314		72.968	31.128	1	3442300			37824	5521	27664	27896	36855	36855					0.015717228488369983
NSRRPLIFW	9	Unmodified	_NSRRPLIFW_					0	0	0		ENST00000253031.6_1_19:11038566-11039058:-|nuORF	ENST00000253031.6_1_19:11038566-11039058:-|nuORF	ENST00000253031.6_1_19:11038566-11039058:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	397.2926940917969	3	396.89273	1187.65636	-0.032207	-1.2783E-05	-0.1662	-6.5963E-05	-0.19841	-7.8746E-05	396.8925543727039	77.972	0.56235	77.972	77.639	78.201	0					24	10	3	0	0	0	0.56537	1	28444	28444		21.59	21.59	1	2267500			37825	10215	27665	27897	36856	36856					0.07003935591023946
NSRRPLIFW	9	Unmodified	_NSRRPLIFW_					0	0	0		ENST00000253031.6_1_19:11038566-11039058:-|nuORF	ENST00000253031.6_1_19:11038566-11039058:-|nuORF	ENST00000253031.6_1_19:11038566-11039058:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	397.6267395019531	3	396.89273	1187.65636	-0.10643	-4.2241E-05	0.076144	3.0221E-05	-0.030286	-1.202E-05	396.8927781552061	76.786	0.55495	77.527	77.25	77.805	0.74052					25	10	3	0	0	0	0.3489	1	29163	29163		27.223	20.593	1	4355000			37826	10215	27665	27897	36857	36857					0.07003935591023946
NSRVPKYIF	9	Unmodified	_NSRVPKYIF_					0	0	0		ENSG00000023330|ENST00000484952|ALAS1	ENSG00000023330|ENST00000484952|ALAS1	ENSG00000023330|ENST00000484952|ALAS1	MULTI-SECPEP	A375_MHC_IP_R2	2	562.6721801757812	2	562.316566	1122.61858	-0.82587	-0.0004644	-0.36048	-0.0002027	-1.1864	-0.00066711	562.316522790704	41.027	0.40611	41.801	41.54	41.946	0.77451					12	7	2	0	0	0	0.65527	1	15179	15179		22.736	3.4793	1	2804700			37827	1077	27666	27898	36858	36858					0.06217424605551969
NSSDTKSGSY	10	Unmodified	_NSSDTKSGSY_					0	0	0			REV__ENSG00000001084|ENST00000650454|GCLC	REV__ENSG00000001084|ENST00000650454|GCLC	MULTI-SECPEP	A375_MHC_IP_R2	2	522.9180297851562	2	523.225268	1044.43598	-0.76282	-0.00039913	-0.19254	-0.00010074	-0.95536	-0.00049987	523.2246095745836	35.617	0.20225	36.38	36.233	36.435	0.76338					5	3	2	0	0	0	0.88918	1	12910	12910		13.042	5.7532	1	735150	+		37828	16081	27667	27899	36859	36859					-0.0844579931770113
NSSFCSLMW	9	Unmodified	_NSSFCSLMW_					0	0	0			REV__ENST00000354431.8_3_1:74663705-74663840:-|nuORF	REV__ENST00000354431.8_3_1:74663705-74663840:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	538.1213989257812	2	537.722795	1073.43104	-0.9269	-0.00049842	-0.93301	-0.0005017	-1.8599	-0.0010001	537.7222028944152	106.67	0.55998	107.43	107.09	107.65	0.75977					15	10	2	0	0	0	0.75466	1	40363	40363		12.532	7.3009	1	1033300	+		37829	23813	27668	27900	36860	36860					-0.1027409798566623
NSSFCSLMW	9	Unmodified	_NSSFCSLMW_					0	0	0			REV__ENST00000354431.8_3_1:74663705-74663840:-|nuORF	REV__ENST00000354431.8_3_1:74663705-74663840:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	537.722795	1073.43104	-0.4493	-0.0002416	-1.4116	-0.00075904	-1.8609	-0.0010006	537.7219865998039	107.49	0.66493	107.49	107.03	107.7	0	0.027679	-0.00019062	NaN	12.532	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1176800	+		37830	23813	27668	27900							-0.1027409798566623
NSSIRPIF	8	Unmodified	_NSSIRPIF_					0	0	0		nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-2|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1	nc|ENSG00000198901|O43663-3|PRC1	nc|ENSG00000198901|O43663-3|PRC1	MULTI-SECPEP	A375_MHC_IP_R1	1	467.6623229980469	2	467.261259	932.507966	-0.27314	-0.00012763	1.2902	0.00060287	1.0171	0.00047524	467.2621161589119	60.272	0.91511	60.272	59.651	60.566	0					29	17	3	0	0	0	0.6033	1	21652	21652		39.95	17.213	1	2634600			37831	9363	27669	27901	36861	36861					0.039012046173297676
NSSLKKAKIL	10	Unmodified	_NSSLKKAKIL_					0	0	0			REV__nc|ENSG00000154822|Q9UPR0-2|PLCL2	REV__nc|ENSG00000154822|Q9UPR0-2|PLCL2	MULTI-MSMS	A375_MHC_IP_R1	1	367.9453430175781	3	367.904524	1100.69174	0.029174	1.0733E-05	0.69395	0.00025531	0.72313	0.00026604	367.90435893279135	39.744	0.71006	39.744	39.289	39.999	0					20	13	3	0	0	0	0.71076	1	13419	13419		7.4771	0.7539	1	1731600	+		37832	19901	27670	27902	36862	36862					0.1454255332816956
NSSLLRML	8	Unmodified	_NSSLLRML_					0	0	0			REV__nc|ENSG00000008838|O75448-2|MED24	REV__nc|ENSG00000008838|O75448-2|MED24	MULTI-SECPEP	A375_MHC_IP_R2	2	467.6612548828125	2	467.262945	932.511337	-1.0118	-0.00047278	-1.2485	-0.0005834	-2.2603	-0.0010562	467.2624085198388	59.236	2.4355	59.983	59.235	61.67	0.74714					59	47	2	0	0	0	0.87643	1	22429	22429		19.257	3.4098	1	2815700	+		37833	16179	27671	27903	36863	36863					0.042381313996770587
NSSPYLWSF	9	Unmodified	_NSSPYLWSF_					0	0	0		FCAR|p.R199S|1|0.23|ENSG00000186431|chr19:54888242-54888242|G/C|missense_variant	FCAR|p.R199S|1|0.23|ENSG00000186431|chr19:54888242-54888242|G/C|missense_variant	FCAR|p.R199S|1|0.23|ENSG00000186431|chr19:54888242-54888242|G/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	550.6744384765625	2	550.756007	1099.49746	-1.0921	-0.0006015	0.063124	3.4766E-05	-1.029	-0.00056674	550.7563125762347	60.283	0.71389	61.028	60.801	61.515	0.74503					17	13	2	0	0	0	0.58047	1	22790	22790		15.847	1.0089	1	936600			37834	13988	27672	27904	36864	36864					-0.048308228277846865
NSSTCAWY	8	Unmodified	_NSSTCAWY_					0	0	0		ENST00000533724.5_1_11:89947115-89956122:-|nuORF	ENST00000533724.5_1_11:89947115-89956122:-|nuORF	ENST00000533724.5_1_11:89947115-89956122:-|nuORF	MSMS	A375_MHC_IP_R1	1	466.1124572753906	2	466.18436	930.354167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.324	1	61.324	60.824	61.824	0								0	0	0	0.16876	1	22102	22102		9.3474	0	1				37835	13203	27673	27905	36865	36865					-0.11379573210501803
NSSTFQDRGWS	11	Unmodified	_NSSTFQDRGWS_					0	0	0		ENST00000577287.5_1_18:67611757-67614608:-|nuORF	ENST00000577287.5_1_18:67611757-67614608:-|nuORF	ENST00000577287.5_1_18:67611757-67614608:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	643.1835327148438	2	642.783815	1283.55308	-0.72698	-0.00046729	0.24876	0.0001599	-0.47822	-0.00030739	642.7839271348989	31.925	0.45616	32.661	32.401	32.857	0.73691					18	8	3	0	0	0	0.79027	1	11298	11298		33.445	16.332	1	6133000			37836	13647	27674	27906	36866	36866					-0.07735641378076252
NSTEKMGLAI	10	Unmodified	_NSTEKMGLAI_					0	0	0			REV__tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	REV__tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	532.2005615234375	2	532.276249	1062.53795	-0.90978	-0.00048426	1.1681	0.00062175	0.25831	0.00013749	532.7797460525358	49.206	0.40441	49.963	49.741	50.145	0.75737					12	7	2	0	0	0	0.60608	1	18491	18491		20.415	2.2682	1	853340	+		37837	28254	27675	27907	36867	36867					0.00917775500352036
NSTPWVKEV	9	Unmodified	_NSTPWVKEV_					0	0	0		ENSG00000146802|ENST00000312814|TMEM168;nc|ENSG00000146802|Q9H0V1-2|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	MULTI-SECPEP	A375_MHC_IP_R1	1	530.676513671875	2	530.277106	1058.53966	-0.43459	-0.00023045	-0.3143	-0.00016667	-0.74889	-0.00039712	530.276964937662	49.939	0.56258	49.939	49.692	50.254	0					23	10	3	0	0	0	0.011204	1	17676	17676		124.95	79.253	1	5722600			37838	5636	27676	27908	36868	36868					0.012731525806202626
NSTPWVKEV	9	Unmodified	_NSTPWVKEV_					0	0	0		ENSG00000146802|ENST00000312814|TMEM168;nc|ENSG00000146802|Q9H0V1-2|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	MULTI-SECPEP	A375_MHC_IP_R2	2	530.6766357421875	2	530.277106	1058.53966	-0.80812	-0.00042853	-0.1835	-9.7308E-05	-0.99162	-0.00052583	530.2770596140934	49.162	0.6077	49.919	49.588	50.196	0.75737					27	11	3	0	0	0	0.14438	1	18433	18433		51.488	32.126	1	7525600			37839	5636	27676	27908	36869	36869					0.012731525806202626
NSTQTSTS	8	Unmodified	_NSTQTSTS_					0	0	0			REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	MSMS	A375_MHC_IP_R1	1	413.1459045410156	2	413.182872	824.35119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.21	1	112.21	111.71	112.71	0								0	0	0	0.16876	1	41131	41131		2.5775	0	1		+		37840	22215	27677	27909	36870	36870					-0.06801125063645941
NSVALEIQQLL	11	Unmodified	_NSVALEIQQLL_					0	0	0		ENSG00000205108|ENST00000378788|FAM205A	ENSG00000205108|ENST00000378788|FAM205A	ENSG00000205108|ENST00000378788|FAM205A	MULTI-MSMS	A375_MHC_IP_R1	1	614.7507934570312	2	614.350803	1226.68705	-0.24196	-0.00014865	-0.16835	-0.00010342	-0.41031	-0.00025207	614.3506951297393	70.996	0.35926	70.996	70.8	71.159	0					10	6	2	0	0	0	0.42429	1	25814	25814		37.075	6.3712	1	1655700			37841	9497	27678	27910	36871	36871					0.08277624394759187
NSVSVYRLDHT	11	Unmodified	_NSVSVYRLDHT_					0	0	0		nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	MULTI-MSMS	A375_MHC_IP_R2	2	645.7507934570312	2	645.825483	1289.63641	-0.51302	-0.00033132	1.4846	0.00095877	0.97155	0.00062745	645.8273094984745	44.04	0.35369	44.809	44.631	44.985	0.7691					8	6	2	0	0	0	0.66366	1	16395	16395		18.373	7.5736	1	929450			37842	2185	27679	27911	36872	36872					0.0031809506976969715
NSYLAKHSI	9	Unmodified	_NSYLAKHSI_					0	0	0		ZNF28|p.K577Nfs*47|1|0.1|ENSG00000198538|chr19:52800114-52800114|T/-|frameshift_variant;nc|ENSG00000198538|P17035-2|ZNF28;ENSG00000198538|ENST00000457749|ZNF28	ZNF28|p.K577Nfs*47|1|0.1|ENSG00000198538|chr19:52800114-52800114|T/-|frameshift_variant	ZNF28|p.K577Nfs*47|1|0.1|ENSG00000198538|chr19:52800114-52800114|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	516.697265625	2	516.777274	1031.53999	-0.7254	-0.00037487	-0.10362	-5.3547E-05	-0.82901	-0.00042841	516.777276182017	41.959	1.1731	42.734	42.198	43.372	0.77451					52	22	3	0	0	0	0.55471	1	15456	15456		17.113	0.1706	1	107890000			37843	9278	27680	27912	36873	36873					0.02548572300474916
NSYLLQLR	8	Unmodified	_NSYLLQLR_					0	0	0			REV__ENST00000522192.5_1_5:158126121-158523561:-|nuORF	REV__ENST00000522192.5_1_5:158126121-158523561:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	504.1873474121094	2	503.787641	1005.56073	-0.39577	-0.00019939	0.075299	3.7935E-05	-0.32047	-0.00016145	503.7876178161663	64.265	0.65857	64.265	63.939	64.597	0					34	12	4	0	0	0	0.2175	1	23206	23206		78.149	29.804	1	14300000	+		37844	20485	27681	27913	36874	36874					0.05817162680136789
NSYLLQLR	8	Unmodified	_NSYLLQLR_					0	0	0			REV__ENST00000522192.5_1_5:158126121-158523561:-|nuORF	REV__ENST00000522192.5_1_5:158126121-158523561:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	503.15069580078125	2	503.787641	1005.56073	-0.61267	-0.00030865	-0.19341	-9.7439E-05	-0.80608	-0.00040609	503.7875182451919	63.345	0.6093	64.085	63.785	64.394	0.74022					28	11	3	0	0	0	0.1561	1	24010	24010		92.491	36.314	1	11721000	+		37845	20485	27681	27913	36875	36875					0.05817162680136789
NSYRMEPL	8	Unmodified	_NSYRMEPL_					0	0	0		ENSG00000184786|ENST00000366774|DYNLT2	ENSG00000184786|ENST00000366774|DYNLT2	ENSG00000184786|ENST00000366774|DYNLT2	MULTI-MSMS	A375_MHC_IP_R2	2	505.6425476074219	2	505.242209	1008.46987	-0.62497	-0.00031576	1.4684	0.0007419	0.84343	0.00042614	505.24323188106797	92.962	0.86356	93.701	93.291	94.154	0.73902					22	16	2	0	0	0	0.76248	1	35397	35397		16.942	1.0951	1	1637700			37846	8608	27682	27914	36876	36876					-0.03403049359644683
NSYWVGEDSTY	11	Unmodified	_NSYWVGEDSTY_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	A375_MHC_IP_R1	1	661.1719970703125	2	660.772582	1319.53061	-0.52477	-0.00034675	0.31344	0.00020712	-0.21132	-0.00013964	660.7726759448133	79.809	0.61568	79.809	79.47	80.086	0					31	11	3	0	0	0	0.00010625	1	29104	29104		135.72	120.47	1	5333800			37847	7898	27683	27915	36877	36877					-0.11637285566371247
NSYWVGEDSTY	11	Unmodified	_NSYWVGEDSTY_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	A375_MHC_IP_R2	2	661.1727294921875	2	660.772582	1319.53061	-0.78089	-0.00051599	0.15389	0.00010169	-0.62701	-0.00041431	660.772679968682	79.34	0.65692	80.084	79.693	80.35	0.74474					30	12	3	0	0	0	0.00072293	1	30071	30071		107.56	96.764	1	5535000			37848	7898	27683	27915	36878	36878					-0.11637285566371247
NTAALVRP	8	Unmodified	_NTAALVRP_					0	0	0			REV__ENST00000519276.1_1_5:158701561-158711936:+|nuORF	REV__ENST00000519276.1_1_5:158701561-158711936:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	421.6478271484375	2	421.248152	840.481751	-0.34767	-0.00014645	3.9615	0.0016688	3.6138	0.0015223	421.2481588725958	35.222	0.70645	35.986	35.677	36.384	0.76338					44	13	5	0	0	0	0.26691	1	12726	12726		58.679	0	1	13596000	+		37849	25683	27684	27916	36879	36879					0.055129354458472335
NTALKPGH	8	Unmodified	_NTALKPGH_					0	0	0		nc|ENSG00000016864|Q68CQ7-2|GLT8D1;ENST00000484163.5_1_3:52729811-52734476:-|nuORF;ENSG00000016864|ENST00000266014|GLT8D1	nc|ENSG00000016864|Q68CQ7-2|GLT8D1	nc|ENSG00000016864|Q68CQ7-2|GLT8D1	MSMS	A375_MHC_IP_R1	1	419.1587219238281	2	419.232502	836.450451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.942	1	34.942	34.442	35.442	0								0	0	0	0.16876	1	11573	11573		16.942	1.1741	1				37850	1039	27685	27917	36880	36880					0.025683624117505133
NTALSLHKTV	10	Unmodified	_NTALSLHKTV_					0	0	0		ENSG00000183808|ENST00000520560|RBM12B	ENSG00000183808|ENST00000520560|RBM12B	ENSG00000183808|ENST00000520560|RBM12B	MSMS	A375_MHC_IP_R2	2	542.4680786132812	2	542.31148	1082.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.159	1	27.837	27.337	28.337	0.67857								0	0	0	0.15207	1	9247	9247		13.906	3.0821	1				37851	8531	27686	27918	36881	36881					0.07040816880316925
NTCTERNVDP	10	Unmodified	_NTCTERNVDP_					0	0	0			REV__ENST00000334350.6_1_16:56691728-56693149:+|nuORF	REV__ENST00000334350.6_1_16:56691728-56693149:+|nuORF	MSMS	A375_MHC_IP_R1	1	574.6956787109375	2	574.753669	1147.49279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.665	1	41.665	41.165	42.165	0								0	0	0	0.10201	1	14399	14399		43.772	17.504	1		+		37852	23654	27687	27919	36882	36882					-0.0750607503282481
NTDANILFY	9	Unmodified	_NTDANILFY_					0	0	0		ENSG00000120820|ENST00000360814|GLT8D2	ENSG00000120820|ENST00000360814|GLT8D2	ENSG00000120820|ENST00000360814|GLT8D2	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1613159179688	2	535.761289	1069.50803	-0.4542	-0.00024334	-0.3458	-0.00018527	-0.8	-0.00042861	535.7612041561164	108.1	1.1202	108.1	107.39	108.51	0					43	21	3	0	0	0	0.11711	1	39621	39621		69.105	20.759	1	3023500			37853	3690	27688	27920	36883	36883					-0.023948401733377978
NTDANILFY	9	Unmodified	_NTDANILFY_					0	0	0		ENSG00000120820|ENST00000360814|GLT8D2	ENSG00000120820|ENST00000360814|GLT8D2	ENSG00000120820|ENST00000360814|GLT8D2	MULTI-SECPEP	A375_MHC_IP_R2	2	536.1607666015625	2	535.761289	1069.50803	-0.91109	-0.00048813	-0.15321	-8.2084E-05	-1.0643	-0.00057021	535.7611931422979	107.25	0.96518	108	107.59	108.56	0.75436					37	18	3	0	0	0	0.20645	1	40506	40506		56.177	16.22	1	4016200			37854	3690	27688	27920	36884	36884					-0.023948401733377978
NTDCLSVTL	9	Unmodified	_NTDCLSVTL_					0	0	0			REV__ENSG00000165195|ENST00000333590|PIGA	REV__ENSG00000165195|ENST00000333590|PIGA	MULTI-SECPEP	A375_MHC_IP_R1	1	483.5849304199219	2	483.23405	964.453547	-0.12941	-6.2535E-05	1.9294	0.00093236	1.8	0.00086982	483.23470768693574	44.328	0.7671	44.328	43.808	44.575	0					25	14	2	0	0	0	0.47368	1	15383	15383		26.884	5.137	1	2641700	+		37855	20559	27689	27921	36885	36885					-0.03010175316387631
NTDDNQLSLL	10	Unmodified	_NTDDNQLSLL_					0	0	0			REV__ENST00000367166.4_1_6:155578855-155578969:-|nuORF	REV__ENST00000367166.4_1_6:155578855-155578969:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	566.6805419921875	2	566.777667	1131.54078	-0.60254	-0.00034151	2.2552	0.0012782	1.6527	0.00093672	566.7782969947216	25.835	0.70908	25.835	25.664	26.373	0					23	13	3	0	0	0	0.64716	1	7776	7776		12.241	1.4411	1	5023500	+		37856	23960	27690	27922	36886	36886					-0.019726778411268242
NTDDTIGDLK	10	Unmodified	_NTDDTIGDLK_					0	0	0		ENST00000589372.1_1_19:9939013-9939570:+|nuORF;ENSG00000198258|ENST00000586895|UBL5	ENST00000589372.1_1_19:9939013-9939570:+|nuORF	ENST00000589372.1_1_19:9939013-9939570:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6637573242188	2	546.264393	1090.51423	-0.51221	-0.0002798	-0.18826	-0.00010284	-0.70047	-0.00038264	546.2642894127587	34.835	0.50788	34.835	34.608	35.116	0					15	9	2	0	0	0	0.24526	1	11527	11527		51.488	27.698	1	19575000			37857	9247	27691	27923	36887	36887					-0.02740366732473376
NTDDTIGDLK	10	Unmodified	_NTDDTIGDLK_					0	0	0		ENST00000589372.1_1_19:9939013-9939570:+|nuORF;ENSG00000198258|ENST00000586895|UBL5	ENST00000589372.1_1_19:9939013-9939570:+|nuORF	ENST00000589372.1_1_19:9939013-9939570:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	546.6638793945312	2	546.264393	1090.51423	-1.1605	-0.00063395	0.055066	3.0081E-05	-1.1055	-0.00060387	546.2643100236033	34.127	0.45779	34.879	34.702	35.16	0.75225					17	8	3	0	0	0	0.011463	1	12302	12302		111.31	34.484	1	20160000			37858	9247	27691	27923	36888	36888					-0.02740366732473376
NTDEAAFYI	9	Unmodified	_NTDEAAFYI_					0	0	0			REV__ENSG00000163746|ENST00000696113|PLSCR2	REV__ENSG00000163746|ENST00000696113|PLSCR2	MULTI-SECPEP	A375_MHC_IP_R1	1	522.1727294921875	2	522.237647	1042.46074	-0.49156	-0.00025671	0.88346	0.00046137	0.3919	0.00020467	522.7397860494465	77.529	0.7625	77.529	77.184	77.946	0					19	14	2	0	0	0	0.75466	1	28315	28315		7.9102	6.0659	1	769740	+		37859	20407	27692	27924	36889	36889					-0.05879119444330172
NTDFGDEFY	9	Unmodified	_NTDFGDEFY_					0	0	0		NFE2L2|p.Q556Tfs*15|1|0.32|ENSG00000116044|chr2:177230937-177230938|-/T|frameshift_variant;nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2	NFE2L2|p.Q556Tfs*15|1|0.32|ENSG00000116044|chr2:177230937-177230938|-/T|frameshift_variant	NFE2L2|p.Q556Tfs*15|1|0.32|ENSG00000116044|chr2:177230937-177230938|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	554.616943359375	2	554.216911	1106.41927	-0.71742	-0.00039761	0.55734	0.00030889	-0.16008	-8.8719E-05	554.217026670125	90.309	0.65952	90.309	89.931	90.59	0					36	12	4	0	0	0	0.03109	1	33153	33153		103.35	71.237	1	4085100			37860	3364	27693	27925	36890	36890					-0.12968300203647232
NTDFGDEFY	9	Unmodified	_NTDFGDEFY_					0	0	0		NFE2L2|p.Q556Tfs*15|1|0.32|ENSG00000116044|chr2:177230937-177230938|-/T|frameshift_variant;nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2	NFE2L2|p.Q556Tfs*15|1|0.32|ENSG00000116044|chr2:177230937-177230938|-/T|frameshift_variant	NFE2L2|p.Q556Tfs*15|1|0.32|ENSG00000116044|chr2:177230937-177230938|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	554.6168212890625	2	554.216911	1106.41927	-0.68486	-0.00037956	0.14826	8.217E-05	-0.53659	-0.00029739	554.2169224111589	89.779	0.91649	90.511	89.985	90.902	0.7318					39	17	3	0	0	0	0.05021	1	34110	34110		88.954	48.505	1	5227300			37861	3364	27693	27925	36891	36891					-0.12968300203647232
NTDFGDSGRLY	11	Unmodified	_NTDFGDSGRLY_					0	0	0		ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	MULTI-MSMS	A375_MHC_IP_R1	1	623.1806640625	2	622.780741	1243.54693	-0.65757	-0.00040952	-1.7414	-0.0010845	-2.3989	-0.001494	622.779686863453	53.039	0.60712	53.039	52.694	53.301	0					17	11	2	0	0	0	0.041676	1	18874	18874		80.896	33.301	1	2988000			37862	5716	27694	27926	36892	36892					-0.06510159609592847
NTDFGDSGRLY	11	Unmodified	_NTDFGDSGRLY_					0	0	0		ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	MULTI-MSMS	A375_MHC_IP_R2	2	623.1793823242188	2	622.780741	1243.54693	-1.1553	-0.00071952	-0.9322	-0.00058056	-2.0875	-0.0013001	622.7796780269504	52.342	0.60569	53.094	52.831	53.437	0.75225					18	11	2	0	0	0	0.34239	2	19760	19760;19789		43.477	18.595	1	3532000			37863	5716	27694	27926	36893;36894	36893					-0.06510159609592847
NTDFVSKH	8	Unmodified	_NTDFVSKH_					0	0	0		nc|ENSG00000049192|Q9UKP5-2|ADAMTS6;nc|ENSG00000049192|Q9UKP5-3|ADAMTS6;ENST00000470597.5_1_5:64558740-64769500:-|nuORF;ENSG00000049192|ENST00000381055|ADAMTS6;nc|ENSG00000049192|Q9UKP5-4|ADAMTS6	nc|ENSG00000049192|Q9UKP5-2|ADAMTS6	nc|ENSG00000049192|Q9UKP5-2|ADAMTS6	MULTI-MSMS	A375_MHC_IP_R1	1	474.6324462890625	2	474.232699	946.450845	-0.47782	-0.0002266	-0.13734	-6.5131E-05	-0.61516	-0.00029173	474.232735351181	61.695	1.842	61.695	61.331	63.173	0					86	35	5	0	0	0	0.31691	1	22202	22202		57.471	6.6163	1	39418000			37864	14465	27695	27927	36895	36895					-0.024522626590396612
NTDFYQTSY	9	Unmodified	_NTDFYQTSY_					0	0	0		ENSG00000145817|ENST00000274496|YIPF5;nc|ENSG00000145817|Q969M3-3|YIPF5;ENST00000522203.5_1_5:143545115-143549519:-|nuORF;ENST00000508754.1_1_5:143543641-143549519:-|nuORF	ENSG00000145817|ENST00000274496|YIPF5	ENSG00000145817|ENST00000274496|YIPF5	MULTI-MSMS	A375_MHC_IP_R1	1	570.1845703125	2	569.738011	1137.46147	-0.21728	-0.00012379	-0.035087	-1.999E-05	-0.25236	-0.00014378	569.7379503738766	62.325	2.0993	62.325	61.839	63.939	0					97	40	5	0	0	0	0.0015806	6	22450	22387;22420;22436;22450;22476;22606		160.69	95.197	1	173010000			37865	5584	27696	27928	36896;36897;36898;36899;36900;36901	36899					-0.10176324795270375
NTDFYQTSY	9	Unmodified	_NTDFYQTSY_					0	0	0		ENSG00000145817|ENST00000274496|YIPF5;nc|ENSG00000145817|Q969M3-3|YIPF5;ENST00000522203.5_1_5:143545115-143549519:-|nuORF;ENST00000508754.1_1_5:143543641-143549519:-|nuORF	ENSG00000145817|ENST00000274496|YIPF5	ENSG00000145817|ENST00000274496|YIPF5	MULTI-MSMS	A375_MHC_IP_R2	2	570.1376953125	2	569.738011	1137.46147	-0.6138	-0.00034971	-0.13916	-7.9283E-05	-0.75296	-0.00042899	569.7379028011741	61.785	2.2248	62.527	61.917	64.142	0.74263					104	43	6	0	0	0	0.0099679	2	23315	23315;23541		121.53	71.601	1	167170000			37866	5584	27696	27928	36902;36903	36902					-0.10176324795270375
NTDFYQTSY	9	Unmodified	_NTDFYQTSY_					0	0	0		ENSG00000145817|ENST00000274496|YIPF5;nc|ENSG00000145817|Q969M3-3|YIPF5;ENST00000522203.5_1_5:143545115-143549519:-|nuORF;ENST00000508754.1_1_5:143543641-143549519:-|nuORF	ENSG00000145817|ENST00000274496|YIPF5	ENSG00000145817|ENST00000274496|YIPF5	MULTI-MSMS	A375_MHC_IP_R2	2	1139.3690185546875	1	1138.46875	1137.46147	-0.15792	-0.00017978	-0.2384	-0.00027141	-0.39632	-0.0004512	1138.4684311452108	61.754	1.5161	62.497	62.068	63.584	0.74263					88	29	5	0	0	0	0.00039373	1	23439	23439		203.64	147.46	1	133790000			37867	5584	27696	27928	36904	36904					-0.10176324795270375
NTDHLSALPPS	11	Unmodified	_NTDHLSALPPS_					0	0	0			REV__nc|ENSG00000112175|P22003-2|BMP5	REV__nc|ENSG00000112175|P22003-2|BMP5	MULTI-SECPEP	A375_MHC_IP_R2	2	575.7261352539062	2	576.288202	1150.56185	-0.51792	-0.00029847	-1.4674	-0.00084565	-1.9853	-0.0011441	576.2877850432071	26.636	0.56025	27.296	27.008	27.568	0.65992					18	10	3	0	0	0	0.80621	1	8963	8963		6.6304	0.89852	1	3690500	+		37868	17714	27697	27929	36905	36905					-0.0074066774163839
NTDHLTTVLY	10	Unmodified	_NTDHLTTVLY_					0	0	0		nc|nan|Q96EF9|ZHX1-C8orf76;ENSG00000189376|ENST00000276704|C8orf76	nc|nan|Q96EF9|ZHX1-C8orf76	nc|nan|Q96EF9|ZHX1-C8orf76	MULTI-SECPEP	A375_MHC_IP_R2	2	589.1514282226562	2	588.798403	1175.58225	-0.85976	-0.00050622	0.27463	0.0001617	-0.58513	-0.00034452	588.7983773624728	61.803	0.45427	62.546	62.319	62.774	0.74263					10	8	2	0	0	0	0.63381	1	23421	23421		38.176	26.681	1	1331600			37869	8983	27698	27930	36906	36906					0.0014850291818220285
NTDHQTQLL	9	Unmodified	_NTDHQTQLL_					0	0	0		nc|ENSG00000051180|Q06609-2|RAD51;nc|ENSG00000051180|Q06609-3|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	MULTI-SECPEP	A375_MHC_IP_R1	1	535.20751953125	2	535.26727	1068.51999	-0.74483	-0.00039868	1.1603	0.00062106	0.41545	0.00022238	535.7682984497609	59.065	1.0171	59.065	58.531	59.548	0					45	19	3	0	0	0	0.56537	1	21171	21171		22.736	0	1	3040200			37870	1234	27699	27931	36907	36907					-0.011532234301284916
NTDHQTQLLY	10	Unmodified	_NTDHQTQLLY_					0	0	0		nc|ENSG00000051180|Q06609-2|RAD51;nc|ENSG00000051180|Q06609-3|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	MULTI-MSMS	A375_MHC_IP_R1	1	617.199462890625	2	616.798934	1231.58332	0.034267	2.1136E-05	-0.38144	-0.00023527	-0.34717	-0.00021414	616.7987208801732	45.258	1.0628	45.258	44.878	45.941	0					66	20	5	0	0	0	0.41205	1	15998	15998		33.445	14.188	1	58602000			37871	1234	27700	27932	36908	36908					-0.02321282712887296
NTDHQTQLLY	10	Unmodified	_NTDHQTQLLY_					0	0	0		nc|ENSG00000051180|Q06609-2|RAD51;nc|ENSG00000051180|Q06609-3|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	MULTI-MSMS	A375_MHC_IP_R2	2	617.1983032226562	2	616.798934	1231.58332	-0.6615	-0.00040801	-0.092493	-5.705E-05	-0.75399	-0.00046506	616.7988926280196	44.494	0.8633	45.263	44.782	45.646	0.76909					58	16	5	0	0	0	0.013372	1	16517	16517		90.135	50.185	1	57429000			37872	1234	27700	27932	36909	36909					-0.02321282712887296
NTDIDYRYF	9	Unmodified	_NTDIDYRYF_					0	0	0			REV__nc|ENSG00000128585|Q9UL63-2|MKLN1	REV__nc|ENSG00000128585|Q9UL63-2|MKLN1	MULTI-MSMS	A375_MHC_IP_R2	2	604.1742553710938	2	603.774928	1205.5353	-1.0087	-0.00060903	-0.42243	-0.00025505	-1.4311	-0.00086408	603.7745429387244	52.968	0.91656	53.72	53.487	54.404	0.75105					33	17	3	0	0	0	0.64136	1	19976	19976		12.241	12.241	1	7385300	+		37873	18455	27701	27933	36910	36910					-0.059243566329541864
NTDIFDCHHW	10	Unmodified	_NTDIFDCHHW_					0	0	0		ENST00000500267.2_1_5:137372575-137372734:+|nuORF	ENST00000500267.2_1_5:137372575-137372734:+|nuORF	ENST00000500267.2_1_5:137372575-137372734:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	644.9981689453125	2	644.264204	1286.51386	-0.38583	-0.00024857	-0.3419	-0.00022028	-0.72773	-0.00046885	644.7655110476433	63.132	0.3597	63.132	62.914	63.274	0					9	6	2	0	0	0	0.8125	1	22804	22804		13.042	0.80181	1	1093000			37874	12775	27702	27934	36911	36911					-0.11794064933314985
NTDLDEMIHE	10	Oxidation (M)	_NTDLDEM(Oxidation (M))IHE_		NTDLDEM(1)IHE		NTDLDEM(44)IHE	0	0	1			REV__ENSG00000163220|ENST00000368738|S100A9	REV__ENSG00000163220|ENST00000368738|S100A9	MULTI-MSMS	A375_MHC_IP_R1	1	617.15869140625	2	616.758617	1231.50268	-0.18694	-0.0001153	-0.37562	-0.00023166	-0.56256	-0.00034696	616.7584017758544	20.736	0.6122	20.736	20.536	21.148	0					21	11	3	0	0	0	0.25271	1	5362	5362		43.858	7.3521	1	2635000	+		37875	20344	27703	27935	36912	36912		482			-0.10380931818122008
NTDLDEMIHE	10	Oxidation (M)	_NTDLDEM(Oxidation (M))IHE_		NTDLDEM(1)IHE		NTDLDEM(44)IHE	0	0	1			REV__ENSG00000163220|ENST00000368738|S100A9	REV__ENSG00000163220|ENST00000368738|S100A9	MULTI-MSMS	A375_MHC_IP_R2	2	617.1578369140625	2	616.758617	1231.50268	-0.97124	-0.00059902	0.31763	0.0001959	-0.65361	-0.00040312	616.75876493445	20.373	0.66114	20.983	20.803	21.464	0.61029					18	12	2	0	0	0	0.25271	1	6368	6368		43.858	18.459	1	2170600	+		37876	20344	27703	27935	36913	36913		482			-0.10380931818122008
NTDLDEMIHE	10	Oxidation (M)	_NTDLDEM(Oxidation (M))IHE_					0	0	1			REV__ENSG00000163220|ENST00000368738|S100A9	REV__ENSG00000163220|ENST00000368738|S100A9	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	616.758617	1231.50268	-0.97124	-0.00059902	0.31763	0.0001959	-0.65361	-0.00040312	616.75876493445	20.373	0.66114	20.983	20.803	21.464	0.61029	0.12337	0.00040246	NaN	43.858	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2170600	+		37877	20344	27703	27935				482			-0.10380931818122008
NTDLGNDLY	9	Unmodified	_NTDLGNDLY_					0	0	0		nc|ENSG00000166477|Q8WVC0-2|LEO1;ENSG00000166477|ENST00000299601|LEO1	nc|ENSG00000166477|Q8WVC0-2|LEO1	nc|ENSG00000166477|Q8WVC0-2|LEO1	MULTI-MSMS	A375_MHC_IP_R1	1	512.6951293945312	2	512.732729	1023.4509	-0.70462	-0.00036128	0.13127	6.7306E-05	-0.57335	-0.00029398	512.7327415771033	66.621	0.66356	66.621	66.326	66.99	0					30	12	3	0	0	0	0.032333	2	24196	24196;24249		72.968	19.392	1	9234900			37878	7078	27704	27936	36914;36915	36914					-0.059883074497065536
NTDLGNDLY	9	Unmodified	_NTDLGNDLY_					0	0	0		nc|ENSG00000166477|Q8WVC0-2|LEO1;ENSG00000166477|ENST00000299601|LEO1	nc|ENSG00000166477|Q8WVC0-2|LEO1	nc|ENSG00000166477|Q8WVC0-2|LEO1	MULTI-MSMS	A375_MHC_IP_R2	2	513.1323852539062	2	512.732729	1023.4509	-0.95345	-0.00048886	0.17844	9.1491E-05	-0.77501	-0.00039737	512.7327518985028	65.966	0.71423	66.704	66.375	67.089	0.73811					39	13	4	0	0	0	0.0098183	2	24980	24946;24980		114.65	61.073	1	8231800			37879	7078	27704	27936	36916;36917	36917					-0.059883074497065536
NTDLMTSQCY	10	Unmodified	_NTDLMTSQCY_					0	0	0			REV__ENSG00000197121|ENST00000354764|PGAP1	REV__ENSG00000197121|ENST00000354764|PGAP1	MULTI-MSMS	A375_MHC_IP_R1	1	588.6387939453125	2	588.239006	1174.46346	-0.22201	-0.0001306	-0.39959	-0.00023505	-0.6216	-0.00036565	588.239034320931	55.885	0.61009	55.885	55.533	56.143	0					32	11	4	0	0	0	0.074642	1	19963	19963		69.105	31.131	1	10089000	+		37880	22256	27705	27937	36918	36918					-0.11679355373325961
NTDLMTSQCY	10	Unmodified	_NTDLMTSQCY_					0	0	0			REV__ENSG00000197121|ENST00000354764|PGAP1	REV__ENSG00000197121|ENST00000354764|PGAP1	MULTI-MSMS	A375_MHC_IP_R2	2	588.639404296875	2	588.239006	1174.46346	-0.68347	-0.00040204	-0.54957	-0.00032328	-1.233	-0.00072532	588.2390931890253	55.186	0.61083	55.937	55.626	56.237	0.75075					32	11	4	0	0	0	0.17879	1	20800	20800		51.415	13.441	1	9938700	+		37881	22256	27705	27937	36919	36919					-0.11679355373325961
NTDLMTSQCY	10	Unmodified	_NTDLMTSQCY_					0	0	0			REV__ENSG00000197121|ENST00000354764|PGAP1	REV__ENSG00000197121|ENST00000354764|PGAP1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	588.239006	1174.46346	-0.22201	-0.0001306	-0.39959	-0.00023505	-0.6216	-0.00036565	588.239034320931	55.885	0.61009	55.885	55.533	56.143	0	-0.025819	4.8653E-05	NaN	69.105	32	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10089000	+		37882	22256	27705	27937							-0.11679355373325961
NTDLMTSQCY	10	Unmodified	_NTDLMTSQCY_					0	0	0			REV__ENSG00000197121|ENST00000354764|PGAP1	REV__ENSG00000197121|ENST00000354764|PGAP1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	588.239006	1174.46346	-0.68347	-0.00040204	-0.54957	-0.00032328	-1.233	-0.00072532	588.2390931890253	55.186	0.61083	55.937	55.626	56.237	0.75075	0.025819	-0.0001278	NaN	69.105	32	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9938700	+		37883	22256	27705	27937							-0.11679355373325961
NTDLVFGQY	9	Unmodified	_NTDLVFGQY_					0	0	0		ENSG00000248098|ENST00000269980|BCKDHA;nc|ENSG00000248098|P12694-2|BCKDHA	ENSG00000248098|ENST00000269980|BCKDHA	ENSG00000248098|ENST00000269980|BCKDHA	MULTI-SECPEP	A375_MHC_IP_R2	2	529.1527099609375	2	528.753464	1055.49238	-0.30081	-0.00015905	-0.19638	-0.00010384	-0.49718	-0.00026289	528.7532014917828	95.214	0.76466	95.964	95.633	96.398	0.75045					21	14	2	0	0	0	0.0085579	1	36140	36140		163.04	74.132	1	5655400			37884	9831	27706	27938	36920	36920					-0.03315126690381476
NTDNLLTEY	9	Unmodified	_NTDNLLTEY_					0	0	0		ENSG00000164151|ENST00000296564|ICE1;ICE1|p.D492Efs*4|1|0.09|ENSG00000164151|chr5:5460809-5460810|-/AGCTTTG|frameshift_variant;ICE1|p.K493Sfs*51|1|0.07|ENSG00000164151|chr5:5460811-5460812|-/GTTTTATG|frameshift_variant;ENST00000505464.1_1_5:5423001-5437265:+|nuORF	ENSG00000164151|ENST00000296564|ICE1;ENST00000505464.1_1_5:5423001-5437265:+|nuORF	ENSG00000164151|ENST00000296564|ICE1	MULTI-MSMS	A375_MHC_IP_R1	1	541.1506958007812	2	541.753661	1081.49277	-0.54838	-0.00029708	0.022011	1.1925E-05	-0.52636	-0.00028516	541.7536895927786	81.724	1.2158	81.724	81.253	82.469	0					55	23	4	0	0	0	0.0094639	2	29819	29819;29952		106.94	10.829	1	17632000			37885	6791;12842	27707	27939	36921;36922	36921					-0.044717517611843505
NTDNLLTEY	9	Unmodified	_NTDNLLTEY_					0	0	0		ENSG00000164151|ENST00000296564|ICE1;ICE1|p.D492Efs*4|1|0.09|ENSG00000164151|chr5:5460809-5460810|-/AGCTTTG|frameshift_variant;ICE1|p.K493Sfs*51|1|0.07|ENSG00000164151|chr5:5460811-5460812|-/GTTTTATG|frameshift_variant;ENST00000505464.1_1_5:5423001-5437265:+|nuORF	ENSG00000164151|ENST00000296564|ICE1;ENST00000505464.1_1_5:5423001-5437265:+|nuORF	ENSG00000164151|ENST00000296564|ICE1	MULTI-MSMS	A375_MHC_IP_R2	2	541.7050170898438	2	541.753661	1081.49277	-0.93273	-0.00050531	-0.037022	-2.0057E-05	-0.96975	-0.00052536	541.7536426247873	81.011	0.9664	81.756	81.365	82.332	0.74473					31	18	2	0	0	0	0.007896	2	30781	30745;30781		129.77	44.131	1	15930000			37886	6791;12842	27707	27939	36923;36924	36924					-0.044717517611843505
NTDPDAEKPRF	11	Unmodified	_NTDPDAEKPRF_					0	0	0		ENSG00000164588|ENST00000303230|HCN1	ENSG00000164588|ENST00000303230|HCN1	ENSG00000164588|ENST00000303230|HCN1	MULTI-SECPEP	A375_MHC_IP_R1	1	644.9981689453125	2	645.309666	1288.60478	-0.34694	-0.00022388	-0.49789	-0.0003213	-0.84483	-0.00054518	645.30926141093	63.147	0.56409	63.147	62.813	63.377	0					16	10	2	0	0	0	0.94168	1	22804	22804		7.1017	0	1	1474500			37887	6851	27708	27940	36925	36925					-0.02797897684217787
NTDPWAGYRY	10	Unmodified	_NTDPWAGYRY_					0	0	0		ENST00000513199.5_1_4:99943548-99960531:+|nuORF;ENST00000510209.5_1_4:99916904-99957225:+|nuORF;ENSG00000164024|ENST00000296411|METAP1	ENST00000513199.5_1_4:99943548-99960531:+|nuORF	ENST00000513199.5_1_4:99943548-99960531:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	622.1799926757812	2	621.780544	1241.54654	-0.38072	-0.00023672	0.41335	0.00025701	0.032628	2.0288E-05	621.7807960207734	63.127	1.0243	63.127	62.711	63.735	0					56	19	4	0	0	0	1.7815E-15	1	22741	22741		224.51	184.55	1	56606000			37888	6759	27709	27941	36926	36926					-0.06457534538822074
NTDPWAGYRY	10	Unmodified	_NTDPWAGYRY_					0	0	0		ENST00000513199.5_1_4:99943548-99960531:+|nuORF;ENST00000510209.5_1_4:99916904-99957225:+|nuORF;ENSG00000164024|ENST00000296411|METAP1	ENST00000513199.5_1_4:99943548-99960531:+|nuORF	ENST00000513199.5_1_4:99943548-99960531:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	622.1798095703125	2	621.780544	1241.54654	-0.80264	-0.00049907	0.1435	8.9223E-05	-0.65914	-0.00040984	621.7806084730739	62.531	0.81083	63.273	62.925	63.736	0.74263					51	15	4	0	0	0	0.028865	1	23640	23640		103.82	94.44	1	58558000			37889	6759	27709	27941	36927	36927					-0.06457534538822074
NTDQASMPDN	10	Unmodified	_NTDQASMPDN_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MSMS	A375_MHC_IP_R1	1	546.6637573242188	2	546.716753	1091.41895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.845	1	34.845	34.345	35.345	0								0	0	0	0.14483	1	11527	11527		27.629	1.3607	1				37890	2162;4507	27710	27942	36928	36928					-0.1231004319515705
NTDSPLRY	8	Unmodified	_NTDSPLRY_					0	0	0		ENSG00000168028|ENST00000301821|RPSA;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENST00000453374.2_1_1:160236508-160236577:-|nuORF;ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENSG00000168028|ENST00000301821|RPSA	ENSG00000168028|ENST00000301821|RPSA	MULTI-MSMS	A375_MHC_IP_R1	1	483.6376647949219	2	483.237981	964.461409	-0.44745	-0.00021622	1.681	0.00081234	1.2336	0.00059612	483.2391894857512	39.567	1.4233	39.567	39.289	40.712	0					40	27	2	0	0	0	0.47739	2	13438	13438;13572		49.933	21.446	1	2761500			37891	7255	27711	27943	36929;36930	36929					-0.022242800046228695
NTDSPLRY	8	Unmodified	_NTDSPLRY_					0	0	0		ENSG00000168028|ENST00000301821|RPSA;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENST00000453374.2_1_1:160236508-160236577:-|nuORF;ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENSG00000168028|ENST00000301821|RPSA	ENSG00000168028|ENST00000301821|RPSA	MULTI-MSMS	A375_MHC_IP_R2	2	483.6376647949219	2	483.237981	964.461409	-0.93702	-0.0004528	-0.53374	-0.00025793	-1.4708	-0.00071073	483.2378087067321	34.127	5.0859	34.879	34.55	39.636	0.75225					292	99	6	0	0	0	0.00058015	16	12214	12193;12214;12249;12467;12704;12752;12817;12938;13075;13121;13182;13232;13427;13469;13957;13976		160.52	78.903	1	7759199999.999999			37892	7255	27711	27943	36931;36932;36933;36934;36935;36936;36937;36938;36939;36940;36941;36942;36943;36944;36945;36946	36932					-0.022242800046228695
NTDSPLRY	8	Unmodified	_NTDSPLRY_					0	0	0		ENSG00000168028|ENST00000301821|RPSA;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENST00000453374.2_1_1:160236508-160236577:-|nuORF;ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENSG00000168028|ENST00000301821|RPSA	ENSG00000168028|ENST00000301821|RPSA	MULTI-MSMS	A375_MHC_IP_R2	2	483.65704345703125	2	483.237981	964.461409	-0.72666	-0.00035115	2.4194	0.0011692	1.6928	0.00081802	483.2393805619048	38.997	1.7817	39.772	39.401	41.183	0.77451					54	34	2	0	0	0	0.57987	1	14699	14699		45.7	20.3	1	6021800			37893	7255	27711	27943	36947	36947					-0.022242800046228695
NTDSPLRY	8	Unmodified	_NTDSPLRY_					0	0	0		ENSG00000168028|ENST00000301821|RPSA;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENST00000453374.2_1_1:160236508-160236577:-|nuORF;ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENSG00000168028|ENST00000301821|RPSA	ENSG00000168028|ENST00000301821|RPSA	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	483.237981	964.461409	-0.28566	-0.00013804	-0.70893	-0.00034258	-0.99459	-0.00048062	483.23771066380743	34.835	4.8839	34.835	34.557	39.441	0	-0.021762	-7.103E-05	NaN	160.52	278	95	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9797000000			37894	7255	27711	27943							-0.022242800046228695
NTDSPLRYV	9	Unmodified	_NTDSPLRYV_					0	0	0		ENSG00000168028|ENST00000301821|RPSA;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENST00000453374.2_1_1:160236508-160236577:-|nuORF;ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENSG00000168028|ENST00000301821|RPSA	ENSG00000168028|ENST00000301821|RPSA	MULTI-SECPEP	A375_MHC_IP_R2	2	533.1715087890625	2	532.772188	1063.52982	-1.029	-0.0005482	1.4224	0.00075784	0.39349	0.00020964	532.7721424552407	57.607	0.6598	58.356	58.069	58.729	0.74895					36	12	4	0	0	0	0.67539	1	21770	21770		16.149	13.154	1	6820500			37895	7255	27712	27944	36948	36948					0.0005996457521177945
NTDSVHLAL	9	Unmodified	_NTDSVHLAL_					0	0	0		ENST00000495224.1_1_1:235295030-235299397:-|nuORF;ENSG00000188739|ENST00000408888|RBM34	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	485.6535949707031	2	485.253631	968.49271	-0.34015	-0.00016506	-0.96517	-0.00046835	-1.3053	-0.00063341	485.25355356929384	58.761	0.50922	58.761	58.481	58.99	0					14	9	2	0	0	0	0.2002	1	21132	21132		37.974	19.828	1	1929300			37896	8929	27713	27945	36949	36949					0.007202930294738508
NTDSVHLAL	9	Unmodified	_NTDSVHLAL_					0	0	0		ENST00000495224.1_1_1:235295030-235299397:-|nuORF;ENSG00000188739|ENST00000408888|RBM34	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	485.65350341796875	2	485.253631	968.49271	-0.8723	-0.00042329	-0.85069	-0.0004128	-1.723	-0.00083609	485.25373810057255	57.852	0.50401	58.601	58.375	58.879	0.74894					14	9	2	0	0	0	0.25276	1	21890	21890		34.102	7.2188	1	1935800			37897	8929	27713	27945	36950	36950					0.007202930294738508
NTDYLRQRALY	11	Unmodified	_NTDYLRQRALY_					0	0	0		nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	MULTI-SECPEP	A375_MHC_IP_R1	1	471.9804382324219	3	471.58088	1411.72081	-0.34876	-0.00016447	0.030612	1.4436E-05	-0.31815	-0.00015003	471.5808490025421	46.11	0.40557	46.11	45.89	46.295	0					16	7	3	0	0	0	0.99089	1	16192	16192		13.535	13.127	1	2721600			37898	1678	27714	27946	36951	36951					0.03142045886534106
NTDYLRQRALY	11	Unmodified	_NTDYLRQRALY_					0	0	0		nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	MULTI-MSMS	A375_MHC_IP_R2	2	471.9809265136719	3	471.58088	1411.72081	-0.63405	-0.00029901	0.18645	8.7927E-05	-0.4476	-0.00021108	471.58099517908937	45.355	0.60568	46.12	45.897	46.503	0.76519					18	11	3	0	0	0	0.68343	1	16967	16967		16.838	12.432	1	3824000			37899	1678	27714	27946	36952	36952					0.03142045886534106
NTEDSYSLAP	10	Unmodified	_NTEDSYSLAP_					0	0	0		ENSG00000111860|ENST00000368491|CEP85L;nc|ENSG00000111860|Q5SZL2-4|CEP85L;ENST00000483035.5_1_6:118886676-118973579:-|nuORF;nc|ENSG00000111860|Q5SZL2-3|CEP85L;nc|ENSG00000111860|Q5SZL2-5|CEP85L;nc|ENSG00000111860|Q5SZL2-2|CEP85L	ENSG00000111860|ENST00000368491|CEP85L	ENSG00000111860|ENST00000368491|CEP85L	MULTI-MSMS	A375_MHC_IP_R1	1	549.2630615234375	2	548.743293	1095.47203	-0.88076	-0.00048331	0.36038	0.00019776	-0.52037	-0.00028555	548.7432608334075	30.104	0.65389	30.104	29.899	30.553	0					29	12	3	0	0	0	0.63639	1	9485	9485		18.146	1.0335	1	27837000			37900	3035	27715	27947	36953	36953					-0.07188342140875648
NTEEEGLKY	9	Unmodified	_NTEEEGLKY_					0	0	0		nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-MSMS	A375_MHC_IP_R1	1	542.1530151367188	2	541.753661	1081.49277	-0.9483	-0.00051375	0.024911	1.3496E-05	-0.92339	-0.00050025	541.7536369282114	30.074	2.4841	30.074	29.798	32.282	0					101	48	5	0	0	0	1.6535E-17	2	9464	9464;9941		243.33	164.6	1	663170000			37901	1104	27716	27948	36954;36955	36954					-0.044717517611843505
NTEEEGLKY	9	Unmodified	_NTEEEGLKY_					0	0	0		nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-MSMS	A375_MHC_IP_R2	2	541.6452026367188	2	541.753661	1081.49277	-1.5265	-0.00082701	0.41388	0.00022422	-1.1127	-0.00060279	541.7538788300282	29.439	2.7863	30.138	29.83	32.616	0.69872					131	54	6	0	0	0	0.11715	2	10716	10716;10942		47.594	21.326	1	523890000			37902	1104	27716	27948	36956;36957	36956					-0.044717517611843505
NTEGLHHLY	9	Unmodified	_NTEGLHHLY_					0	0	0		nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B;nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C;ENSG00000224960|ENST00000412172|PPP4R3C	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	MULTI-MSMS	A375_MHC_IP_R1	1	542.6644897460938	2	542.26453	1082.51451	-0.8116	-0.0004401	-0.24532	-0.00013303	-1.0569	-0.00057313	542.2644202148768	27.918	0.75506	27.918	27.533	28.288	0					36	14	4	0	0	0	1.325E-06	1	8527	8527		214.14	153.75	1	22840000			37903	10008	27717	27949	36958	36958					-0.02344902221943812
NTEGLHHLY	9	Unmodified	_NTEGLHHLY_					0	0	0		nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B;nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C;ENSG00000224960|ENST00000412172|PPP4R3C	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	MULTI-MSMS	A375_MHC_IP_R2	2	542.6641235351562	2	542.26453	1082.51451	-0.79483	-0.00043101	-0.42288	-0.00022931	-1.2177	-0.00066032	542.2643284566319	27.232	0.61253	27.911	27.638	28.251	0.67857					28	11	4	0	0	0	0.0007967	1	9283	9283		197.17	136.78	1	24302000			37904	10008	27717	27949	36959	36959					-0.02344902221943812
NTEKILNY	8	Unmodified	_NTEKILNY_					0	0	0		nc|ENSG00000232388|A0A096LP01-2|SMIM26;ENSG00000232388|ENST00000411646|SMIM26	nc|ENSG00000232388|A0A096LP01-2|SMIM26	nc|ENSG00000232388|A0A096LP01-2|SMIM26	MULTI-SECPEP	A375_MHC_IP_R1	1	498.1636962890625	2	497.763832	993.513111	-0.14291	-7.1137E-05	-0.0068862	-3.4277E-06	-0.1498	-7.4565E-05	497.7639379497677	42.991	0.61115	42.991	42.689	43.3	0					23	11	3	0	0	0	0.2175	1	14940	14940		88.904	31.432	1	3681300			37905	9728	27718	27950	36960	36960					0.01609463689283075
NTEKILNY	8	Unmodified	_NTEKILNY_					0	0	0		nc|ENSG00000232388|A0A096LP01-2|SMIM26;ENSG00000232388|ENST00000411646|SMIM26	nc|ENSG00000232388|A0A096LP01-2|SMIM26	nc|ENSG00000232388|A0A096LP01-2|SMIM26	MULTI-SECPEP	A375_MHC_IP_R2	2	498.1634826660156	2	497.763832	993.513111	-0.4474	-0.0002227	0.0034505	1.7175E-06	-0.44395	-0.00022098	497.7638294697693	42.19	0.66445	42.962	42.553	43.218	0.7724					22	12	3	0	0	0	0.060059	1	15690	15690		149.91	38.627	1	4996100			37906	9728	27718	27950	36961	36961					0.01609463689283075
NTENEDNKY	9	Unmodified	_NTENEDNKY_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	MULTI-MSMS	A375_MHC_IP_R2	2	563.7002563476562	2	563.736	1125.45745	-0.6073	-0.00034236	2.4291	0.0013694	1.8218	0.001027	563.7375550134581	81.155	0.81503	81.9	81.315	82.13	0.74474					25	15	2	0	0	0	0.6324	1	30701	30701		13.042	4.8869	1	1627400			37907	5090	27719	27951	36962	36962					-0.10026414288995511
NTERLFSF	8	Unmodified	_NTERLFSF_					0	0	0		ENST00000232905.3_1_3:40352994-40353473:+|nuORF	ENST00000232905.3_1_3:40352994-40353473:+|nuORF	ENST00000232905.3_1_3:40352994-40353473:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	506.9274597167969	2	507.256174	1012.49779	-0.74189	-0.00037633	-0.56897	-0.00028861	-1.3109	-0.00066494	507.7572737399291	27.737	0.40442	28.416	28.251	28.655	0.67857					15	7	3	0	0	0	0.90775	1	9517	9517		20.454	0	1	3064100			37908	10148	27720	27952	36963	36963					-0.007954031079066226
NTERTVWQY	9	Unmodified	_NTERTVWQY_					0	0	0		nc|ENSG00000179295|Q06124-1|PTPN11;ENSG00000179295|ENST00000351677|PTPN11;nc|ENSG00000179295|Q06124-3|PTPN11	nc|ENSG00000179295|Q06124-1|PTPN11	nc|ENSG00000179295|Q06124-1|PTPN11	MULTI-SECPEP	A375_MHC_IP_R1	1	599.1884155273438	2	598.78837	1195.56219	-0.15326	-9.1768E-05	-0.95331	-0.00057083	-1.1066	-0.0006626	598.7879440939874	49.787	0.66228	49.787	49.439	50.101	0					35	12	4	0	0	0	0.041713	1	17560	17560		110.55	62.804	1	10795000			37909	8219	27721	27953	36964	36964					-0.027772480217663542
NTERTVWQY	9	Unmodified	_NTERTVWQY_					0	0	0		nc|ENSG00000179295|Q06124-1|PTPN11;ENSG00000179295|ENST00000351677|PTPN11;nc|ENSG00000179295|Q06124-3|PTPN11	nc|ENSG00000179295|Q06124-1|PTPN11	nc|ENSG00000179295|Q06124-1|PTPN11	MULTI-MSMS	A375_MHC_IP_R2	2	599.1881713867188	2	598.78837	1195.56219	-0.70262	-0.00042072	-0.31826	-0.00019057	-1.0209	-0.00061129	598.7882029157204	49.055	0.66175	49.813	49.434	50.096	0.75737					33	12	4	0	0	0	0.0099672	1	18367	18367		133.05	76.875	1	11418000			37910	8219	27721	27953	36965	36965					-0.027772480217663542
NTESFGTGIK	10	Unmodified	_NTESFGTGIK_					0	0	0		ENST00000381118.7_1_5:60224765-60240875:-|nuORF	ENST00000381118.7_1_5:60224765-60240875:-|nuORF	ENST00000381118.7_1_5:60224765-60240875:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	527.66357421875	2	527.264196	1052.51384	-0.53701	-0.00028314	-0.12245	-6.4564E-05	-0.65946	-0.00034771	527.2640191360257	31.912	0.41019	31.912	31.769	32.179	0					16	7	3	0	0	0	0.23154	1	10309	10309		46.022	16.941	1	3227200			37911	11368	27722	27954	36966	36966					-0.01031741661677188
NTESFGTGIK	10	Unmodified	_NTESFGTGIK_					0	0	0		ENST00000381118.7_1_5:60224765-60240875:-|nuORF	ENST00000381118.7_1_5:60224765-60240875:-|nuORF	ENST00000381118.7_1_5:60224765-60240875:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	527.264196	1052.51384	-0.51208	-0.00027	-0.30255	-0.00015952	-0.81463	-0.00042953	527.2637454397482	31.281	0.35869	32	31.821	32.18	0.71857	0.043924	-0.00013133	NaN	46.022	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3493300			37912	11368	27722	27954							-0.01031741661677188
NTEVPARSLY	10	Unmodified	_NTEVPARSLY_					0	0	0		ENST00000588552.5_1_19:5159112-5286160:-|nuORF;nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS	ENST00000588552.5_1_19:5159112-5286160:-|nuORF	ENST00000588552.5_1_19:5159112-5286160:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	575.6989135742188	2	575.29857	1148.58259	-0.48178	-0.00027717	-2.4661	-0.0014188	-2.9479	-0.0016959	575.2988005712918	41.625	0.96831	41.625	41.215	42.183	0					49	18	4	0	0	0	0.004656	1	14416	14416		135.72	62.751	1	15778000			37913	13765	27723	27955	36967	36967					0.014239226380595937
NTEVPARSLY	10	Unmodified	_NTEVPARSLY_					0	0	0		ENST00000588552.5_1_19:5159112-5286160:-|nuORF;nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS	ENST00000588552.5_1_19:5159112-5286160:-|nuORF	ENST00000588552.5_1_19:5159112-5286160:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	575.697998046875	2	575.29857	1148.58259	-0.42371	-0.00024376	-2.641	-0.0015194	-3.0648	-0.0017631	575.7976613824331	40.9	0.712	41.675	41.234	41.946	0.77451					32	13	3	0	0	0	0.0010098	2	15200	15124;15200		146.68	68.53	1	13903000			37914	13765	27723	27955	36968;36969	36969					0.014239226380595937
NTGRDKDHL	9	Unmodified	_NTGRDKDHL_					0	0	0		ENSG00000109685|ENST00000508803|NSD2;nc|ENSG00000109685|O96028-6|NSD2;ENST00000508355.5_1_4:1902372-1920392:+|nuORF;nc|ENSG00000109685|O96028-5|NSD2;nc|ENSG00000109685|O96028-3|NSD2;nc|ENSG00000109685|O96028-7|NSD2	ENSG00000109685|ENST00000508803|NSD2	ENSG00000109685|ENST00000508803|NSD2	MULTI-SECPEP	A375_MHC_IP_R1	1	527.705810546875	2	528.265062	1054.51557	-0.72884	-0.00038502	-0.94208	-0.00049767	-1.6709	-0.00088269	528.2654659907279	27.002	0.24958	27.002	26.878	27.128	0					6	4	2	0	0	0	0.58271	1	8086	8086		14.838	1.7958	1	1144500			37915	2884	27724	27956	36970	36970					-0.00950687853060117
NTGSANETW	9	Unmodified	_NTGSANETW_					0	0	0			REV__MMP10|p.D205N|1|0.4|ENSG00000166670|chr11:102778633-102778633|C/T|missense_variant	REV__MMP10|p.D205N|1|0.4|ENSG00000166670|chr11:102778633-102778633|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	490.6272277832031	2	490.209421	978.404288	-0.76904	-0.00037699	0.17337	8.4989E-05	-0.59567	-0.000292	490.2096119362351	35.04	0.40354	35.804	35.627	36.03	0.76338					12	7	2	0	0	0	0.70307	1	12676	12676		6.7232	0.36906	1	1423000	+		37916	27023	27725	27957	36971	36971					-0.08577747281003667
NTHIPERTCI	10	Unmodified	_NTHIPERTCI_					0	0	0		tr|U7T1I5|U7T1I5_FUSNUYlxRdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00658PE=4SV=1	tr|U7T1I5|U7T1I5_FUSNUYlxRdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00658PE=4SV=1	tr|U7T1I5|U7T1I5_FUSNUYlxRdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00658PE=4SV=1	MSMS	A375_MHC_IP_R1	1	592.240478515625	2	592.298047	1182.58154	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.224	1	50.224	49.724	50.724	0								0	0	0	0.15391	1	17787	17787		8.1555	0.54658	1				37917	29907	27726	27958	36972	36972					-0.002446150024979943
NTHTFSTCFC	10	Unmodified	_NTHTFSTCFC_					0	0	0			REV__ENST00000560141.2_1_15:45023912-45024338:+|nuORF	REV__ENST00000560141.2_1_15:45023912-45024338:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	581.1286010742188	2	580.728609	1159.44266	-0.60647	-0.0003522	0.32845	0.00019074	-0.27802	-0.00016146	580.728742067368	61.753	1.2148	62.496	62.118	63.333	0.74263					59	23	4	0	0	0	0.6502	2	23334	23334;23537		17.113	3.2068	1	26668000	+		37918	26162	27727	27959	36973;36974	36973					-0.1306790096232362
NTIESKMVT	9	Unmodified	_NTIESKMVT_					0	0	0		nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000562200.5_1_16:70543798-70557434:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4	nc|ENSG00000103051|Q9H9E3|COG4	nc|ENSG00000103051|Q9H9E3|COG4	MULTI-SECPEP	A375_MHC_IP_R2	2	511.9882507324219	2	511.762975	1021.5114	-1.0561	-0.00054048	-2.3407	-0.0011979	-3.3968	-0.0017384	511.7622395033537	37.603	0.30811	38.375	38.122	38.43	0.77242					8	5	2	0	0	0	0.67483	1	13693	13693		20.454	6.5476	1	2281700			37919	2415	27728	27960	36975	36975					0.001500866090168529
NTIESKMVT	9	Unmodified	_NTIESKMVT_					0	0	0		nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000562200.5_1_16:70543798-70557434:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4	nc|ENSG00000103051|Q9H9E3|COG4	nc|ENSG00000103051|Q9H9E3|COG4	MULTI-MATCH	A375_MHC_IP_R1	1		2	511.762975	1021.5114	-0.69843	-0.00035743	-2.6249	-0.0013433	-3.3233	-0.0017007	511.7617850140689	38.397	0.4099	38.397	38.218	38.628	0	0.010958	-9.2046E-05	NaN	20.454	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1643500			37920	2415	27728	27960							0.001500866090168529
NTISTGLLY	9	Unmodified	_NTISTGLLY_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;SCAF11|p.N670Kfs*2|1|0.23|ENSG00000139218|chr12:45927691-45927692|-/T|frameshift_variant;ENST00000474828.1_1_12:46355467-46384201:-|nuORF;ENST00000547018.5_1_12:46345524-46385838:-|nuORF	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	A375_MHC_IP_R2	2	983.212646484375	1	981.525138	980.517862	0.099732	9.7889E-05	-0.30573	-0.00030008	-0.20599	-0.00020219	981.524606648691	90.505	0.86241	91.239	90.804	91.666	0.73451					40	16	4	0	0	0	0.029064	2	34489	34413;34489		75.761	15.063	1	21488000			37921	5060	27729	27961	36976;36977	36977					0.02682347832035248
NTISTGLLY	9	Unmodified	_NTISTGLLY_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;SCAF11|p.N670Kfs*2|1|0.23|ENSG00000139218|chr12:45927691-45927692|-/T|frameshift_variant;ENST00000474828.1_1_12:46355467-46384201:-|nuORF;ENST00000547018.5_1_12:46345524-46385838:-|nuORF	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MATCH	A375_MHC_IP_R1	1		1	981.525138	980.517862	0.036517	3.5842E-05	-0.11883	-0.00011663	-0.082309	-8.0788E-05	981.5248175066082	91.322	0.96254	91.322	90.794	91.756	0	0.041656	8.6973E-05	NaN	75.761	43	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20544000			37922	5060	27729	27961							0.02682347832035248
NTIYRETKKQY	11	Unmodified	_NTIYRETKKQY_					0	0	0		ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-SECPEP	A375_MHC_IP_R1	1	482.69024658203125	3	481.924536	1442.75178	-0.68986	-0.00033246	-0.11724	-5.65E-05	-0.8071	-0.00038896	482.2587010675884	38.143	0.30561	38.143	37.913	38.218	0					8	5	2	0	0	0	0.99883	1	12905	12905		0.40827	0	1	1280800			37923	7089	27730	27962	36978	36978					0.04811199200776173
NTKDSTKLKY	10	Unmodified	_NTKDSTKLKY_					0	0	0		BLNK|p.R448K|1|0.12|ENSG00000095585|chr10:96192001-96192001|C/T|missense_variant	BLNK|p.R448K|1|0.12|ENSG00000095585|chr10:96192001-96192001|C/T|missense_variant	BLNK|p.R448K|1|0.12|ENSG00000095585|chr10:96192001-96192001|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	399.6336669921875	3	399.88731	1196.6401	-0.31342	-0.00012533	-1.1437	-0.00045733	-1.4571	-0.00058267	399.8872331452775	23.759	0.30584	24.389	24.283	24.588	0.63014					9	5	3	0	0	0	0.93232	1	7749	7749		4.7159	0	1	1560300			37924	237	27731	27963	36979	36979					0.04964764843612102
NTKKKKKKV	9	Unmodified	_NTKKKKKKV_					0	0	0			REV__ENSG00000163814|ENST00000296129|CDCP1	REV__ENSG00000163814|ENST00000296129|CDCP1	MULTI-SECPEP	A375_MHC_IP_R1	1	368.6049499511719	3	367.920397	1100.73936	-0.052372	-1.9269E-05	-3.6637	-0.0013479	-3.716	-0.0013672	367.9195007657273	30.7	0.20131	30.7	30.553	30.754	0					5	3	2	0	0	0	0.79713	1	9720	9720		3.8763	2.9141	1	503070	+		37925	20416	27732	27964	36980	36980					0.19302252319039326
NTKNAAPNQKS	11	Unmodified	_NTKNAAPNQKS_					0	0	0			REV__ENSG00000146410|ENST00000420702|MTFR2	REV__ENSG00000146410|ENST00000420702|MTFR2	MULTI-SECPEP	A375_MHC_IP_R1	1	391.9363708496094	3	391.538793	1171.59455	0.13338	5.2225E-05	-4.1008	-0.0016056	-3.9674	-0.0015534	391.53649943608485	34.793	0.40497	34.793	34.507	34.912	0					16	7	3	0	0	0	0.9348	1	11521	11521		19.144	6.9692	1	4061900	+		37926	19533	27733	27965	36981	36981					0.01561539381214061
NTLGNKLFA	9	Unmodified	_NTLGNKLFA_					0	0	0		ENSG00000138449|ENST00000261024|SLC40A1	ENSG00000138449|ENST00000261024|SLC40A1	ENSG00000138449|ENST00000261024|SLC40A1	MULTI-SECPEP	A375_MHC_IP_R1	1	488.6526794433594	2	489.274367	976.53418	-0.32898	-0.00016096	-0.10877	-5.3217E-05	-0.43775	-0.00021418	489.2742839604361	81.259	0.70942	81.259	80.948	81.657	0					29	13	3	0	0	0	0.35487	1	29614	29614		29.082	3.6823	1	11203000			37927	4997	27734	27966	36982	36982					0.04497473788796924
NTMESALQY	9	Unmodified	_NTMESALQY_					0	0	0		ENST00000531387.5_1_11:3022346-3069017:-|nuORF;nc|ENSG00000110619|P49589-2|CARS1;nc|ENSG00000110619|P49589|CARS1;ENSG00000110619|ENST00000380525|CARS1;ENST00000526890.5_1_11:3039499-3039766:-|nuORF	ENST00000531387.5_1_11:3022346-3069017:-|nuORF	ENST00000531387.5_1_11:3022346-3069017:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	529.1369018554688	2	528.736957	1055.45936	-0.71836	-0.00037982	0.26119	0.0001381	-0.45717	-0.00024172	528.7370758416333	66.313	0.45531	66.313	66.022	66.478	0					13	8	2	0	0	0	0.29123	1	24031	24031		31.268	7.2478	1	1679700			37928	13169	27735	27967	36983	36983					-0.06615076804723685
NTMESALQY	9	Unmodified	_NTMESALQY_					0	0	0		ENST00000531387.5_1_11:3022346-3069017:-|nuORF;nc|ENSG00000110619|P49589-2|CARS1;nc|ENSG00000110619|P49589|CARS1;ENSG00000110619|ENST00000380525|CARS1;ENST00000526890.5_1_11:3039499-3039766:-|nuORF	ENST00000531387.5_1_11:3022346-3069017:-|nuORF	ENST00000531387.5_1_11:3022346-3069017:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	529.1364135742188	2	528.736957	1055.45936	-0.70868	-0.00037471	-0.16178	-8.5541E-05	-0.87047	-0.00046025	528.7368383257615	65.612	0.45676	66.35	66.121	66.577	0.73811					13	8	2	0	0	0	0.19747	1	24903	24903		38.176	7.539	1	1786700			37929	13169	27735	27967	36984	36984					-0.06615076804723685
NTNSLWHSGD	10	Unmodified	_NTNSLWHSGD_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L;nc|ENSG00000177409|Q8IVG5-2|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-SECPEP	A375_MHC_IP_R1	1	565.6250610351562	2	565.746702	1129.47885	-0.73339	-0.00041491	-1.0447	-0.00059106	-1.7781	-0.001006	565.746130563673	30.175	0.75446	30.175	29.899	30.653	0					19	14	2	0	0	0	0.74754	1	9737	9737		17.113	5.6182	1	8759900			37930	8080	27736	27968	36985	36985					-0.08070984469600262
NTNSYDYGDEY	11	Unmodified	_NTNSYDYGDEY_					0	0	0		ENST00000553238.5_1_12:113745708-113770716:-|nuORF;nc|ENSG00000089060|Q6J4K2-2|SLC8B1;ENSG00000089060|ENST00000680972|SLC8B1	ENST00000553238.5_1_12:113745708-113770716:-|nuORF	ENST00000553238.5_1_12:113745708-113770716:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	671.0728149414062	2	670.749304	1339.48405	-0.81324	-0.00054548	0.054968	3.687E-05	-0.75827	-0.00050861	670.7492189897703	84.605	0.35828	84.605	84.442	84.8	0					9	6	2	0	0	0	0.99676	1	30982	30982		2.9952	0	1	1310900			37931	1913	27737	27969	36986	36986					-0.17210770188307833
NTPTRLEKY	9	Unmodified	_NTPTRLEKY_					0	0	0			REV__ENSG00000180245|ENST00000317735|RRH	REV__ENSG00000180245|ENST00000317735|RRH	MULTI-SECPEP	A375_MHC_IP_R1	1	374.9684143066406	3	374.536501	1120.58767	0.10625	3.9796E-05	1.8005	0.00067435	1.9067	0.00071414	374.53777004450944	23.535	0.51039	23.535	23.227	23.737	0					11	9	2	0	0	0	0.71071	1	6492	6492		14.405	6.7964	1	2116600	+		37932	21600	27738	27970	36987	36987					0.032202265006844755
NTQITDIGRY	10	Unmodified	_NTQITDIGRY_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	A375_MHC_IP_R2	2	591.2011108398438	2	590.801477	1179.5884	-0.75542	-0.00044631	0.44198	0.00026112	-0.31345	-0.00018519	590.8016649898844	49.127	0.45634	49.885	49.639	50.096	0.75736					14	8	2	0	0	0	0.10905	1	18444	18444		67.081	34.295	1	2402100			37933	5371	27739	27971	36988	36988					0.005790211497242126
NTRYVPFFFFR	11	Unmodified	_NTRYVPFFFFR_					0	0	0			REV__ENST00000373095.5_1_9:130703123-130703396:-|nuORF	REV__ENST00000373095.5_1_9:130703123-130703396:-|nuORF	MSMS	A375_MHC_IP_R1	1	498.6244201660156	3	498.594461	1492.76155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.474	1	35.474	34.974	35.974	0								0	0	0	0.16291	1	11800	11800		3.5927	0.96144	1		+		37934	24081	27740	27972	36989	36989					0.034884319967659394
NTSDFDQNY	9	Unmodified	_NTSDFDQNY_					0	0	0			REV__ENSG00000129292|ENST00000395386|PHF20L1	REV__ENSG00000129292|ENST00000395386|PHF20L1	MULTI-SECPEP	A375_MHC_IP_R2	2	552.6165161132812	2	552.217443	1102.42033	-0.76737	-0.00042375	-0.86619	-0.00047833	-1.6336	-0.00090208	552.2168309802393	82.964	1.5237	83.704	83.242	84.766	0.73962					43	29	3	0	0	0	0.77901	1	31513	31513		5.7319	1.4026	1	4518300	+		37935	18485	27741	27973	36990	36990					-0.12678085834750163
NTSDTGWAK	9	Unmodified	_NTSDTGWAK_					0	0	0		nc|ENSG00000005187|Q53FZ2-2|ACSM3;ENSG00000005187|ENST00000289416|ACSM3	nc|ENSG00000005187|Q53FZ2-2|ACSM3	nc|ENSG00000005187|Q53FZ2-2|ACSM3	MULTI-MSMS	A375_MHC_IP_R1	1	490.62762451171875	2	490.227613	978.440674	-0.25828	-0.00012661	0.13025	6.3851E-05	-0.12803	-6.2763E-05	490.2275055079436	34.835	1.5766	34.835	34.608	36.184	0					83	30	4	0	0	0	0.054426	1	11489	11489		62.573	14.227	1	288910000			37936	886	27742	27974	36991	36991					-0.049408703842800605
NTSDTGWAK	9	Unmodified	_NTSDTGWAK_					0	0	0		nc|ENSG00000005187|Q53FZ2-2|ACSM3;ENSG00000005187|ENST00000289416|ACSM3	nc|ENSG00000005187|Q53FZ2-2|ACSM3	nc|ENSG00000005187|Q53FZ2-2|ACSM3	MULTI-MSMS	A375_MHC_IP_R2	2	490.6271667480469	2	490.227613	978.440674	-0.88943	-0.00043602	0.20658	0.00010127	-0.68285	-0.00033475	490.227569216392	34.176	1.5207	34.928	34.651	36.172	0.75225					83	29	5	0	0	0	0.070818	2	12239	12239;12457		56.177	7.8312	1	212370000			37937	886	27742	27974	36992;36993	36992					-0.049408703842800605
NTSHETDSRLH	11	Unmodified	_NTSHETDSRLH_					0	0	0			REV__nc|ENSG00000164830|Q8N573-3|OXR1	REV__nc|ENSG00000164830|Q8N573-3|OXR1	MSMS	A375_MHC_IP_R2	2	648.7164306640625	2	648.799997	1295.58544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.379	1	98.135	97.635	98.635	0.75586								0	0	0	0.14479	1	36961	36961		23.79	2.2528	1		+		37938	20520	27743	27975	36994	36994					-0.050528539750985146
NTSKKYKK	8	Unmodified	_NTSKKYKK_					0	0	0		tr|U7SSH1|U7SSH1_FUSNURloB-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01266PE=4SV=1	tr|U7SSH1|U7SSH1_FUSNURloB-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01266PE=4SV=1	tr|U7SSH1|U7SSH1_FUSNURloB-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01266PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	499.19500732421875	2	498.795466	995.57638	-0.39576	-0.0001974	-0.040657	-2.028E-05	-0.43641	-0.00021768	498.7954258328236	55	0.60904	55	54.619	55.228	0					20	11	2	0	0	0	0.77028	1	19673	19673		14.838	1.3304	1	3323600			37939	29634	27744	27976	36995	36995					0.07841449197189831
NTSMHAVQQAQ	11	Unmodified	_NTSMHAVQQAQ_					0	0	0		ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	MSMS	A375_MHC_IP_R1	1	607.6963500976562	2	607.782761	1213.55097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.007	1	75.007	74.507	75.507	0								0	0	0	0.13586	1	27324	27324		28.234	8.9766	1				37940	7658	27745	27977	36996	36996					-0.04726393387522876
NTSSVLRSY	9	Unmodified	_NTSSVLRSY_					0	0	0		ENST00000456324.5_1_19:36726621-36726717:+|nuORF	ENST00000456324.5_1_19:36726621-36726717:+|nuORF	ENST00000456324.5_1_19:36726621-36726717:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	514.1639404296875	2	513.764363	1025.51417	-0.92336	-0.00047439	2.1989	0.0011297	1.2755	0.0006553	513.7657507653777	33.079	0.66233	33.831	33.534	34.196	0.75225					15	12	2	0	0	0	0.31609	1	11852	11852		29.437	10.075	1	2071400			37941	12132	27746	27978	36997	36997					0.0024367805820020294
NTSVRTEDK	9	Unmodified	_NTSVRTEDK_					0	0	0			REV__nc|ENSG00000289720|Q96J02-3|ITCH	REV__nc|ENSG00000289720|Q96J02-3|ITCH	MSMS	A375_MHC_IP_R2	2	525.1919555664062	2	525.264727	1048.5149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.169	1	38.944	38.444	39.444	0.77451								0	0	0	0.12472	1	14024	14024		34.402	11.665	1		+		37942	16717	27747	27979	36998	36998					-0.007415272927573824
NTTAFLTPLE	10	Unmodified	_NTTAFLTPLE_					0	0	0		ENSG00000198087|ENST00000359314|CD2AP;ENST00000486693.1_1_6:47575686-47577041:+|nuORF	ENSG00000198087|ENST00000359314|CD2AP	ENSG00000198087|ENST00000359314|CD2AP	MULTI-SECPEP	A375_MHC_IP_R2	2	554.2305908203125	2	553.790047	1105.56554	-1.2717	-0.00070424	-0.04964	-2.749E-05	-1.3213	-0.00073173	553.7899749915595	52.745	1.065	53.497	53.133	54.198	0.75105					30	20	2	0	0	0	0.55307	1	19838	19838		23.79	2.0431	1	3299500			37943	9227	27748	27980	36999	36999					0.01698002032230761
NTTGYFTNY	9	Unmodified	_NTTGYFTNY_					0	0	0		tr|U7SMP4|U7SMP4_FUSNUIron(III)transportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01771PE=4SV=1	tr|U7SMP4|U7SMP4_FUSNUIron(III)transportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01771PE=4SV=1	tr|U7SMP4|U7SMP4_FUSNUIron(III)transportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01771PE=4SV=1	MSMS	A375_MHC_IP_R1	1	540.6434326171875	2	540.735271	1079.45599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.169	1	63.169	62.669	63.669	0								0	0	0	0.1521	1	22826	22826		18.146	1.0335	1				37944	29532	27749	27981	37000	37000					-0.08056003587103078
NTTKQEHF	8	Unmodified	_NTTKQEHF_					0	0	0		ENSG00000121594|ENST00000264246|CD80	ENSG00000121594|ENST00000264246|CD80	ENSG00000121594|ENST00000264246|CD80	MULTI-SECPEP	A375_MHC_IP_R1	1	503.1431579589844	2	502.743431	1003.47231	-0.32821	-0.000165	-0.48281	-0.00024273	-0.81102	-0.00040773	502.74303753801644	34.846	0.45881	34.846	34.759	35.218	0					15	8	2	0	0	0	0.81376	1	11587	11587		25.399	0	1	8342000			37945	3727	27750	27982	37001	37001					-0.029288776303360464
NTTQARKIYL	10	Unmodified	_NTTQARKIYL_					0	0	0			REV__nc|ENSG00000074054|Q7Z460-2|CLASP1	REV__nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	A375_MHC_IP_R1	1	604.7432861328125	2	604.343312	1206.67207	-0.66853	-0.00040402	0.25973	0.00015696	-0.40881	-0.00024706	604.3434746332515	30.546	0.85849	30.546	30.251	31.109	0					57	16	5	0	0	0	0.52785	1	9668	9668		26.268	2.4784	1	114910000	+		37946	16630	27751	27983	37002	37002					0.07700177317428825
NTTQARKIYL	10	Unmodified	_NTTQARKIYL_					0	0	0			REV__nc|ENSG00000074054|Q7Z460-2|CLASP1	REV__nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-SECPEP	A375_MHC_IP_R1	1	603.7002563476562	2	604.343312	1206.67207	-0.66853	-0.00040402	0.25973	0.00015696	-0.40881	-0.00024706	604.3434746332515	30.546	0.85849	30.546	30.251	31.109	0					57	16	5	0	0	0	0.92227	1	9819	9819		13.042	1.5478	1	114910000	+		37947	16630	27751	27983	37003	37003					0.07700177317428825
NTTQARKIYL	10	Unmodified	_NTTQARKIYL_					0	0	0			REV__nc|ENSG00000074054|Q7Z460-2|CLASP1	REV__nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	A375_MHC_IP_R2	2	604.7428588867188	2	604.343312	1206.67207	-0.76315	-0.00046121	0.1461	8.8293E-05	-0.61705	-0.00037291	604.3434109792424	29.864	1.0619	30.563	30.335	31.397	0.69872					63	20	5	0	0	0	0.60608	1	10427	10427		20.415	0	1	167820000	+		37948	16630	27751	27983	37004	37004					0.07700177317428825
NTVIMSFKL	9	Unmodified	_NTVIMSFKL_					0	0	0		tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1	tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1	tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	526.0114135742188	2	526.794078	1051.5736	-0.41711	-0.00021973	-0.44649	-0.00023521	-0.8636	-0.00045494	526.793922359402	67.62	0.35645	68.357	68.155	68.511	0.73631					9	6	2	0	0	0	0.60917	1	25579	25579		13.906	0	1	1936700			37949	29614	27752	27984	37005	37005					0.04987857748028546
NTVKRFHL	8	Unmodified	_NTVKRFHL_					0	0	0		nc|ENSG00000189212|Q6NXN4|DPY19L2P1	nc|ENSG00000189212|Q6NXN4|DPY19L2P1	nc|ENSG00000189212|Q6NXN4|DPY19L2P1	MULTI-SECPEP	A375_MHC_IP_R1	1	507.6614990234375	2	507.795801	1013.57705	-0.18143	-9.2127E-05	-0.074209	-3.7683E-05	-0.25563	-0.00012981	507.79566883171935	35.723	0.46034	35.723	35.472	35.932	0					14	8	2	0	0	0	0.92636	1	11857	11857		11.64	5.4345	1	2718400			37950	14831	27753	27985	37006	37006					0.07080288636893783
NTVLLCHL	8	Unmodified	_NTVLLCHL_					0	0	0			REV__ENSG00000099860|ENST00000215631|GADD45B	REV__ENSG00000099860|ENST00000215631|GADD45B	MSMS	A375_MHC_IP_R2	2	456.6688537597656	2	456.752213	911.489873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.825	1	41.6	41.1	42.1	0.77451								0	0	0	0.16876	1	15129	15129		20.454	3.5113	1		+		37951	17029	27754	27986	37007	37007					0.030587463709707663
NTVLPPETV	9	Unmodified	_NTVLPPETV_					0	0	0		ENSG00000166847|ENST00000300087|DCTN5;ENST00000566053.5_1_16:23652819-23678462:+|nuORF;nc|ENSG00000166847|Q9BTE1-2|DCTN5	ENSG00000166847|ENST00000300087|DCTN5	ENSG00000166847|ENST00000300087|DCTN5	MULTI-MSMS	A375_MHC_IP_R1	1	487.1893310546875	2	485.266207	968.517862	-0.44374	-0.00021533	-0.090536	-4.3934E-05	-0.53427	-0.00025927	485.26612726204894	86.552	1.98	86.552	86.072	88.052	0					120	38	5	0	0	0	0.29981	1	31641	31641		30.637	2.1497	1	229260000			37952	7117	27755	27987	37008	37008					0.03234347832062667
NTVNLRNTL	9	Unmodified	_NTVNLRNTL_					0	0	0		nc|ENSG00000105379|P38117-2|ETFB	nc|ENSG00000105379|P38117-2|ETFB	nc|ENSG00000105379|P38117-2|ETFB	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1240234375	2	522.793455	1043.57236	-0.48302	-0.00025252	-0.087708	-4.5853E-05	-0.57072	-0.00029837	522.7934750254673	31.794	0.56263	31.794	31.565	32.127	0					17	10	2	0	0	0	0.24324	1	10195	10195		19.362	4.1135	1	7418500			37953	14525	27756	27988	37009	37009					0.05231359703475391
NTVNLRNTL	9	Unmodified	_NTVNLRNTL_					0	0	0		nc|ENSG00000105379|P38117-2|ETFB	nc|ENSG00000105379|P38117-2|ETFB	nc|ENSG00000105379|P38117-2|ETFB	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1928100585938	2	522.793455	1043.57236	-0.60027	-0.00031382	0.026447	1.3826E-05	-0.57382	-0.00029999	522.7932307469555	31.11	0.61078	31.829	31.517	32.128	0.71857					24	11	4	0	0	0	0.34746	1	10971	10971		19.362	19.362	1	5979600			37954	14525	27756	27988	37010	37010					0.05231359703475391
NTVNPREW	8	Unmodified	_NTVNPREW_					0	0	0		ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;ELP2|p.P380S|1|0.74|ENSG00000134759|chr18:36154862-36154862|C/T|missense_variant	ENSG00000134759|ENST00000358232|ELP2	ENSG00000134759|ENST00000358232|ELP2	MULTI-SECPEP	A375_MHC_IP_R1	1	508.6512451171875	2	508.251423	1014.48829	-0.67925	-0.00034523	0.39204	0.00019926	-0.2872	-0.00014597	508.2516507770728	36.736	0.65846	36.736	36.489	37.148	0					17	12	2	0	0	0	0.83673	1	12370	12370		26.268	8.1218	1	2955300			37955	4605	27757	27989	37011	37011					-0.018371713934357103
NTVNPREW	8	Unmodified	_NTVNPREW_					0	0	0		ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;ELP2|p.P380S|1|0.74|ENSG00000134759|chr18:36154862-36154862|C/T|missense_variant	ENSG00000134759|ENST00000358232|ELP2	ENSG00000134759|ENST00000358232|ELP2	MULTI-MSMS	A375_MHC_IP_R2	2	508.1821594238281	2	508.251423	1014.48829	-0.89296	-0.00045385	0.091534	4.6523E-05	-0.80143	-0.00040733	508.251480681198	35.937	0.51007	36.7	36.384	36.894	0.76338					15	9	2	0	0	0	0.6833	1	13054	13054		39.95	3.8227	1	2167900			37956	4605	27757	27989	37012	37012					-0.018371713934357103
NTVPGYDFLV	10	Unmodified	_NTVPGYDFLV_					0	0	0		nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2;ENST00000494371.5_1_1:230807261-230814859:+|nuORF	nc|ENSG00000135775|Q14746-2|COG2	nc|ENSG00000135775|Q14746-2|COG2	MULTI-SECPEP	A375_MHC_IP_R1	1	562.6560668945312	2	562.784764	1123.55498	-0.5429	-0.00030554	-3.1628	-0.00178	-3.7057	-0.0020855	563.2834886976885	83.824	0.2524	83.824	83.685	83.937	0					6	4	2	0	0	0	0.74754	1	30682	30682		17.113	0	1	712700			37957	4712	27758	27990	37013	37013					-0.0018598062220007705
NTWLFLSSC	9	Unmodified	_NTWLFLSSC_					0	0	0		nc|ENSG00000177575|Q86VB7-2|CD163;ENST00000537044.1_1_12:7633616-7656286:-|nuORF;ENSG00000177575|ENST00000432237|CD163;nc|ENSG00000177575|Q86VB7-4|CD163;nc|ENSG00000177575|Q86VB7|CD163	nc|ENSG00000177575|Q86VB7-2|CD163	nc|ENSG00000177575|Q86VB7-2|CD163	MULTI-MSMS	A375_MHC_IP_R1	1	535.6739501953125	2	535.75241	1069.49027	-0.28611	-0.00015328	0.43675	0.00023399	0.15065	8.071E-05	535.7528602409944	48.62	0.55729	48.62	48.375	48.933	0					16	10	2	0	0	0	0.65721	1	17266	17266		10.824	0.75	1	1259400			37958	13246	27759	27991	37014	37014					-0.04169878699826768
NVARLPII	8	Unmodified	_NVARLPII_					0	0	0		ENSG00000204262|ENST00000374866|COL5A2	ENSG00000204262|ENST00000374866|COL5A2	ENSG00000204262|ENST00000374866|COL5A2	MULTI-SECPEP	A375_MHC_IP_R1	1	448.6899108886719	2	448.28982	894.565087	-0.067443	-3.0234E-05	0.37067	0.00016617	0.30323	0.00013593	448.2899247570287	103.04	0.66177	103.04	102.61	103.27	0					18	12	2	0	0	0	0.93661	1	37835	37835		15.847	7.2539	1	1475500			37959	9419	27760	27992	37015	37015					0.1135867189370856
NVARLPII	8	Unmodified	_NVARLPII_					0	0	0		ENSG00000204262|ENST00000374866|COL5A2	ENSG00000204262|ENST00000374866|COL5A2	ENSG00000204262|ENST00000374866|COL5A2	MULTI-MATCH	A375_MHC_IP_R2	2		2	448.28982	894.565087	-0.28059	-0.00012579	0.11724	5.2559E-05	-0.16335	-7.3227E-05	448.2898375453912	101.88	0.76304	102.64	102.26	103.02	0.76428	-0.19807	-0.00012239	NaN	21.747	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1089000			37960	9419	27760	27992							0.1135867189370856
NVASATKKFSY	11	Unmodified	_NVASATKKFSY_					0	0	0		ENST00000491911.5_1_9:140508423-140509541:+|nuORF;ENSG00000197070|ENST00000371421|ARRDC1	ENST00000491911.5_1_9:140508423-140509541:+|nuORF	ENST00000491911.5_1_9:140508423-140509541:+|nuORF	MSMS	A375_MHC_IP_R1	1	405.9657897949219	3	405.883789	1214.62954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.732	1	26.732	26.232	27.232	0								0	0	0	0.16138	1	8009	8009		6.2344	0.83165	1				37961	9112	27761	27993	37016	37016					0.030807821891812637
NVCPIPIR	8	Unmodified	_NVCPIPIR_					0	0	0			REV__nc|ENSG00000181090|Q9H9B1-3|EHMT1	REV__nc|ENSG00000181090|Q9H9B1-3|EHMT1	MSMS	A375_MHC_IP_R2	2	456.18914794921875	2	456.260205	910.505857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.061	1	89.793	89.293	90.293	0.7318								0	0	0	0.16876	1	33896	33896		13.508	2.3934	1		+		37962	21637	27762	27994	37017	37017					0.047024526078757845
NVCRNVNNPI	10	Unmodified	_NVCRNVNNPI_					0	0	0		ENSG00000077274|ENST00000324068|CAPN6	ENSG00000077274|ENST00000324068|CAPN6	ENSG00000077274|ENST00000324068|CAPN6	MSMS	A375_MHC_IP_R2	2	571.8273315429688	2	571.790389	1141.56623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.872	1	86.605	86.105	87.105	0.73374								0	0	0	0.15308	1	32654	32654		10.824	2.6684	1				37963	1652	27763	27995	37018	37018					0.0011051820029024384
NVDDDPCSDY	10	Unmodified	_NVDDDPCSDY_					0	0	0		nc|ENSG00000127329|P23467-4|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB;ENSG00000127329|ENST00000334414|PTPRB	nc|ENSG00000127329|P23467-4|PTPRB	nc|ENSG00000127329|P23467-4|PTPRB	MSMS	A375_MHC_IP_R1	1	571.7030029296875	2	571.700768	1141.38698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.943	1	78.943	78.443	79.443	0								0	0	0	0.15531	1	28813	28813		3.5965	1.5367	1				37964	4083	27764	27996	37019	37019					-0.17805455668963077
NVDDDPCSDY	10	Unmodified	_NVDDDPCSDY_					0	0	0		nc|ENSG00000127329|P23467-4|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB;ENSG00000127329|ENST00000334414|PTPRB	nc|ENSG00000127329|P23467-4|PTPRB	nc|ENSG00000127329|P23467-4|PTPRB	MSMS	A375_MHC_IP_R2	2	571.7030639648438	2	571.700768	1141.38698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.063	1	78.806	78.306	79.306	0.74293								0	0	0	0.1552	1	29645	29645		3.9444	1.8846	1				37965	4083	27764	27996	37020	37020					-0.17805455668963077
NVDESLLGY	9	Unmodified	_NVDESLLGY_					0	0	0		ENSG00000172890|ENST00000319023|NADSYN1;nc|ENSG00000172890|Q6IA69-2|NADSYN1;ENST00000531236.1_1_11:71196518-71209628:+|nuORF	ENSG00000172890|ENST00000319023|NADSYN1	ENSG00000172890|ENST00000319023|NADSYN1	MULTI-SECPEP	A375_MHC_IP_R2	2	505.6451416015625	2	505.245472	1008.47639	-0.60324	-0.00030478	-1.7748	-0.00089671	-2.378	-0.0012015	505.7455416689383	90.552	1.0145	91.286	90.904	91.919	0.7345					39	19	3	0	0	0	0.34746	1	34425	34425		45.7	11.298	1	4272400			37966	7743	27765	27997	37021	37021					-0.027508329272677656
NVDKLVEDH	9	Unmodified	_NVDKLVEDH_					0	0	0		nc|ENSG00000105953|Q02218-2|OGDH;ENSG00000105953|ENST00000222673|OGDH;nc|ENSG00000105953|Q02218-3|OGDH	nc|ENSG00000105953|Q02218-2|OGDH	nc|ENSG00000105953|Q02218-2|OGDH	MSMS	A375_MHC_IP_R1	1	534.691162109375	2	534.769645	1067.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.42	1	106.42	105.92	106.92	0								0	0	0	0.15486	1	39061	39061		13.042	0.51092	1				37967	2652	27766	27998	37022	37022					-0.006323392873810008
NVDPVQHTY	9	Unmodified	_NVDPVQHTY_					0	0	0		nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN;ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;AGRN|p.C774Pfs*25|1|0.27|ENSG00000188157|chr1:1045224-1045246|GCTGCCAGGACAATATCACCGCA/-|frameshift_variant	nc|ENSG00000188157|O00468-4|AGRN	nc|ENSG00000188157|O00468-4|AGRN	MULTI-MSMS	A375_MHC_IP_R1	1	537.1558227539062	2	536.756538	1071.49852	-1.0444	-0.00056056	0.053354	2.8638E-05	-0.991	-0.00053192	536.7565111461814	30.026	0.90537	30.026	29.798	30.703	0					49	17	4	0	0	0	0.0050367	1	9460	9460		162.31	112.38	1	133430000			37968	14823	27767	27999	37023	37023					-0.03436608458855517
NVDPVQHTY	9	Unmodified	_NVDPVQHTY_					0	0	0		nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN;ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;AGRN|p.C774Pfs*25|1|0.27|ENSG00000188157|chr1:1045224-1045246|GCTGCCAGGACAATATCACCGCA/-|frameshift_variant	nc|ENSG00000188157|O00468-4|AGRN	nc|ENSG00000188157|O00468-4|AGRN	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1555786132812	2	536.756538	1071.49852	-1.6321	-0.00087603	0.48332	0.00025943	-1.1488	-0.0006166	536.756784222847	29.408	0.85805	30.107	29.83	30.688	0.69872					51	15	5	0	0	0	0.0073895	1	10225	10225		147.24	105.15	1	128150000			37969	14823	27767	27999	37024	37024					-0.03436608458855517
NVDVKSFIVM	10	Unmodified	_NVDVKSFIVM_					0	0	0			REV__nc|ENSG00000078808|Q9BRK5-4|SDF4	REV__nc|ENSG00000078808|Q9BRK5-4|SDF4	MULTI-SECPEP	A375_MHC_IP_R1	1	384.60833740234375	3	384.542487	1150.60563	0.30001	0.00011537	0.49192	0.00018916	0.79193	0.00030453	384.5426710806461	33.964	0.6553	33.964	33.648	34.303	0					14	12	2	0	0	0	0.88918	1	11182	11182		11.518	0.71837	1	2216000	+		37970	16719	27768	28000	37025	37025					0.036352254311623255
NVEGYILSDG	10	Unmodified	_NVEGYILSDG_					0	0	0		tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	533.6822509765625	2	533.756204	1065.49785	-0.64249	-0.00034293	0.051704	2.7597E-05	-0.59079	-0.00031534	533.7561747050493	50.758	0.60918	50.758	50.459	51.068	0					17	11	2	0	0	0	0.91909	1	17914	17914		13.906	9.5768	1	2065000			37971	29475	27769	28001	37026	37026					-0.03227447898552782
NVELDPEIQ	9	Unmodified	_NVELDPEIQ_					0	0	0		ENSG00000186049|ENST00000305748|KRT73;CON__Q32MB2;nc|ENSG00000186049|Q86Y46-2|KRT73;ENSG00000139648|ENST00000267119|KRT71;CON__Q3SY84;KRT74|p.V136M|1|0.73|ENSG00000170484|chr12:52573372-52573372|C/T|missense_variant;CON__Q6NXH9;KRT74|p.P124S|1|0.16|ENSG00000170484|chr12:52573408-52573408|G/A|missense_variant;KRT71|p.P114L|1|0.28|ENSG00000139648|chr12:52552737-52552737|G/A|missense_variant;CON__Q6IME9;ENSG00000170484|ENST00000305620|KRT74;CON__Q7RTS7;CON__Q9R0H5	ENSG00000186049|ENST00000305748|KRT73;CON__Q6IME9;ENSG00000170484|ENST00000305620|KRT74;CON__Q9R0H5	CON__Q9R0H5	MULTI-MSMS	A375_MHC_IP_R1	1	529.1644287109375	2	528.764029	1055.5135	-0.43734	-0.00023125	0.0041952	2.2183E-06	-0.43314	-0.00022903	528.7639787189189	68.769	0.65896	68.769	68.565	69.224	0					28	12	3	0	0	0	0.0094735	1	24950	24950		107.1	0	1	3739700		+	37972	635;616;629;625	27770	28002	37027	37027					-0.012031613815224773
NVELDPEIQ	9	Unmodified	_NVELDPEIQ_					0	0	0		ENSG00000186049|ENST00000305748|KRT73;CON__Q32MB2;nc|ENSG00000186049|Q86Y46-2|KRT73;ENSG00000139648|ENST00000267119|KRT71;CON__Q3SY84;KRT74|p.V136M|1|0.73|ENSG00000170484|chr12:52573372-52573372|C/T|missense_variant;CON__Q6NXH9;KRT74|p.P124S|1|0.16|ENSG00000170484|chr12:52573408-52573408|G/A|missense_variant;KRT71|p.P114L|1|0.28|ENSG00000139648|chr12:52552737-52552737|G/A|missense_variant;CON__Q6IME9;ENSG00000170484|ENST00000305620|KRT74;CON__Q7RTS7;CON__Q9R0H5	ENSG00000186049|ENST00000305748|KRT73;CON__Q6IME9;ENSG00000170484|ENST00000305620|KRT74;CON__Q9R0H5	CON__Q9R0H5	MULTI-MSMS	A375_MHC_IP_R2	2	529.163330078125	2	528.764029	1055.5135	-0.43647	-0.00023079	-0.27604	-0.00014596	-0.71251	-0.00037675	528.7639123064548	68.184	0.76216	68.92	68.56	69.323	0.73511					34	14	3	0	0	0	0.0095341	1	25830	25830		96.936	0	1	4566800		+	37973	635;616;629;625	27770	28002	37028	37028					-0.012031613815224773
NVERDPSVLY	10	Unmodified	_NVERDPSVLY_					0	0	0		nc|ENSG00000134909|A7KAX9-2|ARHGAP32;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-MSMS	A375_MHC_IP_R1	1	596.7037353515625	2	596.303852	1190.59315	-0.60425	-0.00036031	0.11261	6.7149E-05	-0.49164	-0.00029317	596.3037300126132	27.861	0.55412	27.861	27.684	28.238	0					19	10	3	0	0	0	0.48529	1	8518	8518		29.082	1.8583	1	7273400			37974	4625	27771	28003	37029	37029					0.005479052925011274
NVERDPSVLY	10	Unmodified	_NVERDPSVLY_					0	0	0		nc|ENSG00000134909|A7KAX9-2|ARHGAP32;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-MSMS	A375_MHC_IP_R2	2	596.7034301757812	2	596.303852	1190.59315	-0.51866	-0.00030928	0.13481	8.0387E-05	-0.38386	-0.00022889	596.303829498476	27.241	0.35732	27.92	27.792	28.149	0.67857					16	6	3	0	0	0	0.48529	1	9312	9312		29.082	1.8583	1	7883200			37975	4625	27771	28003	37030	37030					0.005479052925011274
NVERDPSVLY	10	Unmodified	_NVERDPSVLY_					0	0	0		nc|ENSG00000134909|A7KAX9-2|ARHGAP32;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	596.303852	1190.59315	-0.51866	-0.00030928	0.13481	8.0387E-05	-0.38386	-0.00022889	596.303829498476	27.241	0.35732	27.92	27.792	28.149	0.67857	0.029316	1.0985E-05	NaN	29.082	16	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7883200			37976	4625	27771	28003							0.005479052925011274
NVERLTDSW	9	Unmodified	_NVERLTDSW_					0	0	0			REV__nc|ENSG00000145649|P12544-2|GZMA	REV__nc|ENSG00000145649|P12544-2|GZMA	MSMS	A375_MHC_IP_R2	2	560.2347412109375	2	560.275095	1118.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.221	1	74.958	74.458	75.458	0.73752								0	0	0	0.15283	1	28172	28172		16.942	3.4344	1		+		37977	19483	27772	28004	37031	37031					-0.018889369131102285
NVERRILDLY	10	Unmodified	_NVERRILDLY_					0	0	0		nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	MULTI-MSMS	A375_MHC_IP_R1	1	646.2613525390625	2	645.861869	1289.70918	-0.63885	-0.00041261	0.73339	0.00047367	0.094539	6.1059E-05	645.8624862767844	66.759	0.40979	66.759	66.529	66.938	0					11	7	2	0	0	0	0.70972	1	24210	24210		13.042	2.9685	1	1980900			37978	4020	27773	28005	37032	37032					0.07591848863194173
NVERRILDLY	10	Unmodified	_NVERRILDLY_					0	0	0		nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	MULTI-MSMS	A375_MHC_IP_R2	2	646.2615356445312	2	645.861869	1289.70918	-0.88917	-0.00057428	0.3496	0.00022579	-0.53956	-0.00034848	645.8621055454512	65.885	0.40723	66.623	66.375	66.782	0.73812					12	7	2	0	0	0	0.70312	1	24998	24998		12.241	5.5175	1	1801100			37979	4020	27773	28005	37033	37033					0.07591848863194173
NVEVYIVRGS	10	Unmodified	_NVEVYIVRGS_					0	0	0			REV__ENST00000608008.1_1_18:9135885-9135957:-|nuORF	REV__ENST00000608008.1_1_18:9135885-9135957:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	379.9364318847656	3	379.208384	1134.60332	0.21604	8.1926E-05	-1.6199	-0.00061429	-1.4039	-0.00053237	379.54190221319254	52.681	0.56007	52.681	52.336	52.897	0					23	10	4	0	0	0	0.76274	1	18827	18827		25.997	1.1158	1	3199400	+		37980	26556	27774	28006	37034	37034					0.04140513017705416
NVEWAKPSTN	10	Unmodified	_NVEWAKPSTN_					0	0	0		ENST00000590158.1_1_19:10225792-10226817:-|nuORF;ENSG00000130811|ENST00000253108|EIF3G	ENST00000590158.1_1_19:10225792-10226817:-|nuORF	ENST00000590158.1_1_19:10225792-10226817:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	573.6813354492188	2	573.28292	1144.55129	-0.37648	-0.00021583	-0.84885	-0.00048663	-1.2253	-0.00070246	573.2824787592629	33.024	0.4043	33.024	32.836	33.241	0					16	7	3	0	0	0	0.025172	1	10743	10743		62.78	22.541	1	3926000			37981	13782	27775	28007	37035	37035					-0.015206503960371265
NVEWAKPSTN	10	Unmodified	_NVEWAKPSTN_					0	0	0		ENST00000590158.1_1_19:10225792-10226817:-|nuORF;ENSG00000130811|ENST00000253108|EIF3G	ENST00000590158.1_1_19:10225792-10226817:-|nuORF	ENST00000590158.1_1_19:10225792-10226817:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	573.681640625	2	573.28292	1144.55129	-0.27607	-0.00015826	-1.2006	-0.00068828	-1.4767	-0.00084654	573.2823539494591	32.35	0.61211	33.087	32.755	33.367	0.73692					17	11	2	0	0	0	0.012187	1	11516	11516		90.964	50.725	1	6672500			37982	13782	27775	28007	37036	37036					-0.015206503960371265
NVFGYYTDY	9	Unmodified	_NVFGYYTDY_					0	0	0		tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	MSMS	A375_MHC_IP_R1	1	571.2239379882812	2	571.245472	1140.47639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.846	1	78.846	78.346	79.346	0								0	0	0	0.15486	1	28777	28777		12.532	2.3482	1				37983	30058	27776	28008	37037	37037					-0.08822832927262425
NVFKIAQSQ	9	Unmodified	_NVFKIAQSQ_					0	0	0			REV__nc|ENSG00000143952|Q9P1Q0-3|VPS54	REV__nc|ENSG00000143952|Q9P1Q0-3|VPS54	MSMS	A375_MHC_IP_R2	2	517.699951171875	2	517.785099	1033.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.187	1	91.921	91.421	92.421	0.7345								0	0	0	0.15071	1	34695	34695		20.415	1.1575	1		+		37984	19399	27777	28009	37038	37038					0.040208588175119075
NVGGALRFE	9	Unmodified	_NVGGALRFE_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	A375_MHC_IP_R1	1	482.15631103515625	2	481.756341	961.498129	-0.10026	-4.8303E-05	0.25667	0.00012365	0.1564	7.5348E-05	481.7563522838153	39.162	0.356	39.162	38.933	39.289	0					12	6	3	0	0	0	0.31062	1	13389	13389		29.841	1.3537	1	3013600	+		37985	19676	27778	28010	37039	37039					0.01584016611957395
NVGGALRFE	9	Unmodified	_NVGGALRFE_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	A375_MHC_IP_R2	2	482.1867980957031	2	481.756341	961.498129	-0.90929	-0.00043806	0.47594	0.00022929	-0.43336	-0.00020877	481.7563072473501	38.271	0.4072	39.045	38.843	39.25	0.77451					11	7	2	0	0	0	0.13845	2	14076	14076;14116		43.772	7.6454	1	2120700	+		37986	19676	27778	28010	37040;37041	37040					0.01584016611957395
NVGGALRFE	9	Unmodified	_NVGGALRFE_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	A375_MHC_IP_R2	2	482.1867980957031	2	481.756341	961.498129	-0.90929	-0.00043806	0.47594	0.00022929	-0.43336	-0.00020877	481.7563072473501	38.271	0.4072	39.045	38.843	39.25	0.77451					11	7	2	0	0	0	0.37663	1	14076	14076		43.772	7.6454	1	2120700	+		37987	19676	27778	28010	37042	37042					0.01584016611957395
NVGGALRFE	9	Unmodified	_NVGGALRFE_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	481.756341	961.498129	-0.10026	-4.8303E-05	0.25667	0.00012365	0.1564	7.5348E-05	481.7563522838153	39.162	0.356	39.162	38.933	39.289	0	0.058318	-3.4815E-05	NaN	43.772	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3013600	+		37988	19676	27778	28010							0.01584016611957395
NVGLIRKL	8	Unmodified	_NVGLIRKL_					0	0	0		ENSG00000198001|ENST00000613694|IRAK4	ENSG00000198001|ENST00000613694|IRAK4	ENSG00000198001|ENST00000613694|IRAK4	MULTI-SECPEP	A375_MHC_IP_R1	1	457.2026672363281	2	456.803094	911.591636	-0.40969	-0.00018715	0.29523	0.00013486	-0.11446	-5.2285E-05	456.80308199898735	41.038	0.35303	41.038	40.913	41.266	0					9	6	2	0	0	0	0.86263	1	14174	14174		34.102	5.6156	1	3477800			37989	9220	27779	28011	37043	37043					0.1323036078503037
NVGLIRKL	8	Unmodified	_NVGLIRKL_					0	0	0		ENSG00000198001|ENST00000613694|IRAK4	ENSG00000198001|ENST00000613694|IRAK4	ENSG00000198001|ENST00000613694|IRAK4	MULTI-MATCH	A375_MHC_IP_R2	2		2	456.803094	911.591636	-0.31708	-0.00014484	-0.35427	-0.00016183	-0.67135	-0.00030667	456.80292599143894	40.039	0.45559	40.814	40.575	41.031	0.77451	-0.11198	-0.00012551	NaN	34.102	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1772800			37990	9220	27779	28011							0.1323036078503037
NVGWNGIEPS	10	Unmodified	_NVGWNGIEPS_					0	0	0		ENSG00000241322|ENST00000395906|FBXW10B;nc|ENSG00000241322|O95170-2|FBXW10B	ENSG00000241322|ENST00000395906|FBXW10B	ENSG00000241322|ENST00000395906|FBXW10B	MULTI-MSMS	A375_MHC_IP_R1	1	536.6634521484375	2	536.756538	1071.49852	-1.0444	-0.00056056	0.053354	2.8638E-05	-0.991	-0.00053192	536.7565111461814	30.026	0.90537	30.026	29.798	30.703	0					49	17	4	0	0	0	0.70334	1	9392	9392		10.8	2.644	1	133430000			37991	9783	27780	28012	37044	37044					-0.03436608458855517
NVHRSVKPQI	10	Unmodified	_NVHRSVKPQI_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1;KPNB1|p.Q741Rfs*18|1|0.44|ENSG00000108424|chr17:47678164-47678164|A/-|frameshift_variant;ENST00000580573.1_1_17:45754418-45755781:+|nuORF	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MSMS	A375_MHC_IP_R1	1	393.6304626464844	3	393.231523	1176.67274	-0.070659	-2.7785E-05	-0.59244	-0.00023297	-0.6631	-0.00026075	393.2312157879285	129.19	1.5262	129.19	128.68	130.21	0					44	29	2	0	0	0	0.72416	1	49683	49683		0.62683	0.21856	1	6283600			37992	2800	27781	28013	37045	37045					0.09147016757151505
NVHRSVKPQI	10	Unmodified	_NVHRSVKPQI_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1;KPNB1|p.Q741Rfs*18|1|0.44|ENSG00000108424|chr17:47678164-47678164|A/-|frameshift_variant;ENST00000580573.1_1_17:45754418-45755781:+|nuORF	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	393.231523	1176.67274	-0.22664	-8.912E-05	-0.8818	-0.00034675	-1.1084	-0.00043587	393.2310742886111	129.14	1.9747	129.37	128.55	130.53	0.23947	0.093817	-0.00011084	NaN	0.62683	73	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8251700			37993	2800	27781	28013							0.09147016757151505
NVIERLQEA	9	Unmodified	_NVIERLQEA_					0	0	0		nc|ENSG00000126756|Q9UBK9-2|UXT;ENSG00000126756|ENST00000333119|UXT	nc|ENSG00000126756|Q9UBK9-2|UXT	nc|ENSG00000126756|Q9UBK9-2|UXT	MULTI-SECPEP	A375_MHC_IP_R1	1	536.6927490234375	2	536.293288	1070.57202	-0.22808	-0.00012232	-0.44612	-0.00023925	-0.6742	-0.00036157	536.2930544380868	49.209	1.1166	49.209	48.882	49.998	0					42	21	3	0	0	0	0.023846	1	17369	17369		114.5	58.994	1	16735000			37994	4057	27782	28014	37046	37046					0.039559399836207376
NVIERLQEA	9	Unmodified	_NVIERLQEA_					0	0	0		nc|ENSG00000126756|Q9UBK9-2|UXT;ENSG00000126756|ENST00000333119|UXT	nc|ENSG00000126756|Q9UBK9-2|UXT	nc|ENSG00000126756|Q9UBK9-2|UXT	MULTI-MSMS	A375_MHC_IP_R2	2	536.6926879882812	2	536.293288	1070.57202	-0.84868	-0.00045514	0.0016504	8.8508E-07	-0.84703	-0.00045425	536.293265281404	48.443	1.1652	49.2	48.779	49.944	0.75737					49	22	4	0	0	0	0.0095341	1	18120	18120		96.936	41.433	1	19650000			37995	4057	27782	28014	37047	37047					0.039559399836207376
NVIGSLDAYN	10	Unmodified	_NVIGSLDAYN_					0	0	0		nc|ENSG00000177575|Q86VB7-2|CD163;ENST00000537044.1_1_12:7633616-7656286:-|nuORF	nc|ENSG00000177575|Q86VB7-2|CD163	nc|ENSG00000177575|Q86VB7-2|CD163	MULTI-MSMS	A375_MHC_IP_R1	1	533.6632690429688	2	533.264196	1064.51384	-0.53525	-0.00028543	-0.0090183	-4.8091E-06	-0.54427	-0.00029024	533.2641433878599	56.198	0.70897	56.198	55.941	56.65	0					48	13	5	0	0	0	0.42311	1	20086	20086		32.786	9.6373	1	24335000			37996	13246	27783	28015	37048	37048					-0.015837416616705013
NVIKILESKNN	11	Unmodified	_NVIKILESKNN_					0	0	0			REV__tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1	REV__tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	636.7996826171875	2	636.369527	1270.7245	-1.0417	-0.00066293	0.21409	0.00013624	-0.82765	-0.00052669	636.3694112871333	149.4	1.7393	149.4	148.26	150	0					154	57	4	0	0	0	0.73809	3	56720	56720;56820;57102		1.1933	0.12188	1	545220	+		37997	28222	27784	28016	37049;37050;37051	37049					0.09996715660417976
NVIKILESKNN	11	Unmodified	_NVIKILESKNN_					0	0	0			REV__tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1	REV__tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	636.7997436523438	2	636.369527	1270.7245	-0.59249	-0.00037704	-0.3355	-0.0002135	-0.92799	-0.00059054	636.3691547482736	149.46	1.5337	149.48	148.48	150.01	0.01825					161	58	3	0	0	0	0.73809	1	58167	58167		1.1933	0.12188	1	537760	+		37998	28222	27784	28016	37052	37052					0.09996715660417976
NVKFEYRDT	9	Unmodified	_NVKFEYRDT_					0	0	0			REV__nc|ENSG00000169851|O60245|PCDH7	REV__nc|ENSG00000169851|O60245|PCDH7	MSMS	A375_MHC_IP_R1	1	391.1639709472656	3	391.196256	1170.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.045	1	46.045	45.545	46.545	0								0	0	0	0.15486	1	16138	16138		1.9064	0.79662	1		+		37999	20946	27785	28017	37053	37053					-0.011523638790094992
NVKLFLYQIL	10	Unmodified	_NVKLFLYQIL_					0	0	0		nc|ENSG00000059758|Q00537-2|CDK17;ENSG00000059758|ENST00000261211|CDK17	nc|ENSG00000059758|Q00537-2|CDK17	nc|ENSG00000059758|Q00537-2|CDK17	MULTI-MSMS	A375_MHC_IP_R2	2	625.7778930664062	2	625.878999	1249.74344	-0.61219	-0.00038315	-0.21187	-0.00013261	-0.82406	-0.00051576	626.3805013276788	141.9	0.7085	141.94	141.52	142.23	0.030731					25	13	3	0	0	0	0.72378	1	55476	55476		1.6526	0	1	1265500			38000	1305	27786	28018	37054	37054					0.12856297022085528
NVKRLTPLL	9	Unmodified	_NVKRLTPLL_					0	0	0			REV__ENST00000473880.5_1_7:102106264-102108393:+|nuORF	REV__ENST00000473880.5_1_7:102106264-102108393:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	352.29730224609375	3	351.897481	1052.67061	-0.35894	-0.00012631	0.026385	9.2849E-06	-0.33256	-0.00011703	351.89746538649774	48.805	0.96465	49.562	49.231	50.196	0.75737					24	18	2	0	0	0	0.22013	1	18342	18342		36.506	6.6656	1	2940200	+		38001	20198	27787	28019	37055	37055					0.1463858801932929
NVKRLTPLL	9	Unmodified	_NVKRLTPLL_					0	0	0			REV__ENST00000473880.5_1_7:102106264-102108393:+|nuORF	REV__ENST00000473880.5_1_7:102106264-102108393:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	351.897481	1052.67061	-0.35894	-0.00012631	0.026385	9.2849E-06	-0.33256	-0.00011703	351.89746538649774	48.805	0.96465	49.562	49.231	50.196	0.75737	-0.13721	0.00018234	NaN	36.506	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2940200	+		38002	20198	27787	28019							0.1463858801932929
NVKVDPEIQ	9	Unmodified	_NVKVDPEIQ_					0	0	0		ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;CON__P35908	ENSG00000172867|ENST00000309680|KRT2	ENSG00000172867|ENST00000309680|KRT2	MULTI-SECPEP	A375_MHC_IP_R1	1	521.6820678710938	2	521.282389	1040.55022	-0.42097	-0.00021944	0.38111	0.00019867	-0.039854	-2.0775E-05	521.2823102293607	35.114	0.50846	35.114	34.861	35.369	0					20	9	3	0	0	0	0.090157	1	11686	11686		59.368	9.8141	1	5463000		+	38003	602	27788	28020	37056	37056					0.031571352350511006
NVKVDPEIQ	9	Unmodified	_NVKVDPEIQ_					0	0	0		ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;CON__P35908	ENSG00000172867|ENST00000309680|KRT2	ENSG00000172867|ENST00000309680|KRT2	MULTI-MSMS	A375_MHC_IP_R2	2	521.6818237304688	2	521.282389	1040.55022	-0.88187	-0.0004597	0.31333	0.00016333	-0.56855	-0.00029637	521.2824083535406	34.388	0.45991	35.14	34.904	35.364	0.75225					16	8	3	0	0	0	0.020087	1	12401	12401		83.429	19.468	1	6796000		+	38004	602	27788	28020	37057	37057					0.031571352350511006
NVLEKINSIVP	11	Unmodified	_NVLEKINSIVP_					0	0	0		tr|U7STZ0|U7STZ0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01250PE=4SV=1	tr|U7STZ0|U7STZ0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01250PE=4SV=1	tr|U7STZ0|U7STZ0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01250PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	612.6695556640625	2	613.36117	1224.70779	-0.37026	-0.0002271	-0.16572	-0.00010165	-0.53598	-0.00032875	613.3608820757509	142.99	0.96408	143.02	142.53	143.5	0.030731					55	18	4	0	0	0	0.99955	1	55717	55717		2.9952	0.26005	1	22595000			38005	29729	27789	28021	37058	37058					0.10442214774411696
NVLLSTPAPLY	11	Unmodified	_NVLLSTPAPLY_					0	0	0		ENSG00000140274|ENST00000323030|DUOXA2	ENSG00000140274|ENST00000323030|DUOXA2	ENSG00000140274|ENST00000323030|DUOXA2	MSMS	A375_MHC_IP_R1	1	396.59600830078125	3	396.560535	1186.65977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.993	1	28.993	28.493	29.493	0								0	0	0	0.16224	1	9013	9013		7.0371	1.5138	1				38006	5134	27790	28022	37059	37059					0.07391140854360856
NVLRGAVGQ	9	Unmodified	_NVLRGAVGQ_					0	0	0			REV__ENST00000485713.5_1_7:150755703-150755907:+|nuORF	REV__ENST00000485713.5_1_7:150755703-150755907:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	457.6641540527344	2	457.264333	912.514114	-0.0093697	-4.2844E-06	0.19438	8.8882E-05	0.18501	8.4597E-05	457.26432263275507	109.18	6.309	109.18	107.95	114.26	0					351	123	3	0	0	0	0.6656	1	40036	40036		10.074	0	1	34386000	+		38007	25311	27791	28023	37060	37060					0.05435722848869773
NVLRLQDLVDK	11	Unmodified	_NVLRLQDLVDK_					0	0	0		ENSG00000109063|ENST00000583535|MYH3;ENSG00000133020|ENST00000403437|MYH8	ENSG00000109063|ENST00000583535|MYH3;ENSG00000133020|ENST00000403437|MYH8	ENSG00000133020|ENST00000403437|MYH8	MULTI-SECPEP	A375_MHC_IP_R2	2	1313.0537109375	1	1312.75833	1311.75105	0.44966	0.00059029	2.4163	0.003172	2.8659	0.0037623	1312.760414417387	115.81	0.30459	116.5	116.24	116.54	0.68999					6	5	2	0	0	0	0.99955	1	43596	43596		2.9952	0.26005	1	4988800			38008	4473;2851	27792	28024	37061	37061					0.10764404551696316
NVLRRDLKPQ	10	Unmodified	_NVLRRDLKPQ_					0	0	0		ENST00000442838.2_1_8:123781530-123781986:+|nuORF	ENST00000442838.2_1_8:123781530-123781986:+|nuORF	ENST00000442838.2_1_8:123781530-123781986:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	413.9819641113281	3	413.582444	1237.7255	0.060283	2.4932E-05	-1.1824	-0.00048901	-1.1221	-0.00046408	413.5818249328099	130.55	1.7273	130.55	129.5	131.23	0					38	33	2	0	0	0	0.72591	1	50032	50032		0.69767	0	1	13215000			38009	12000	27793	28025	37062	37062					0.11614974819917734
NVLRRDLKPQ	10	Unmodified	_NVLRRDLKPQ_					0	0	0		ENST00000442838.2_1_8:123781530-123781986:+|nuORF	ENST00000442838.2_1_8:123781530-123781986:+|nuORF	ENST00000442838.2_1_8:123781530-123781986:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	413.582444	1237.7255	-0.0049518	-2.048E-06	-1.1369	-0.00047019	-1.1418	-0.00047224	413.5818967489867	130.07	2.0775	130.28	129.49	131.57	0.2142	-0.13446	1.5145E-05	NaN	0.69767	61	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9955200			38010	12000	27793	28025							0.11614974819917734
NVPDSFNEV	9	Unmodified	_NVPDSFNEV_					0	0	0		ENSG00000108506|ENST00000251334|INTS2;nc|ENSG00000108506|Q9H0H0|INTS2	ENSG00000108506|ENST00000251334|INTS2	ENSG00000108506|ENST00000251334|INTS2	MULTI-MSMS	A375_MHC_IP_R1	1	510.6700134277344	2	510.735271	1019.45599	-0.79505	-0.00040606	0.39079	0.00019959	-0.40427	-0.00020647	510.73537539737396	67.539	0.91396	67.539	67.194	68.108	0					28	17	2	0	0	0	0.32092	2	24423	24423;24437		29.082	5.9332	1	3478100			38011	2806	27794	28026	37063;37064	37063					-0.05296003587091036
NVPDVYTQI	9	Unmodified	_NVPDVYTQI_					0	0	0		ENST00000414961.2_1_2:214162027-214228821:+|nuORF;nc|ENSG00000144451|Q8N0X2-4|SPAG16;nc|ENSG00000144451|Q8N0X2-3|SPAG16;nc|ENSG00000144451|Q8N0X2-5|SPAG16;ENSG00000144451|ENST00000331683|SPAG16	ENST00000414961.2_1_2:214162027-214228821:+|nuORF	ENST00000414961.2_1_2:214162027-214228821:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	525.1693115234375	2	524.769114	1047.52368	-0.54027	-0.00028352	0.10675	5.6021E-05	-0.43352	-0.0002275	524.7690747711223	83.58	0.96509	83.58	83.226	84.191	0					39	18	3	0	0	0	0.14606	1	30543	30543		63.961	7.7835	1	8437700			38012	5486	27795	28027	37065	37065					0.001814463437312952
NVPDVYTQI	9	Unmodified	_NVPDVYTQI_					0	0	0		ENST00000414961.2_1_2:214162027-214228821:+|nuORF;nc|ENSG00000144451|Q8N0X2-4|SPAG16;nc|ENSG00000144451|Q8N0X2-3|SPAG16;nc|ENSG00000144451|Q8N0X2-5|SPAG16;ENSG00000144451|ENST00000331683|SPAG16	ENST00000414961.2_1_2:214162027-214228821:+|nuORF	ENST00000414961.2_1_2:214162027-214228821:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	525.168212890625	2	524.769114	1047.52368	-0.4996	-0.00026217	-0.4485	-0.00023536	-0.9481	-0.00049753	524.7688333145435	82.926	0.75578	83.665	83.242	83.998	0.73962					37	14	3	0	0	0	0.0575	1	31443	31443		86.332	21.097	1	9203400			38013	5486	27795	28027	37066	37066					0.001814463437312952
NVPEILYPTF	10	Unmodified	_NVPEILYPTF_					0	0	0		nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MULTI-SECPEP	A375_MHC_IP_R2	2	398.6119384765625	3	398.213135	1191.61758	-0.57912	-0.00023061	1.5118	0.00060203	0.93271	0.00037142	398.214742980526	33.924	0.65691	34.676	34.298	34.955	0.75225					21	12	3	0	0	0	0.93232	1	12162	12162		4.7159	0.18705	1	3749500			38014	9947	27796	28028	37067	37067					0.02943165446004059
NVPGEIVE	8	Unmodified	_NVPGEIVE_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-SECPEP	A375_MHC_IP_R1	1	855.8118896484375	1	856.441074	855.433798	-0.35252	-0.00030191	0.0075711	6.4842E-06	-0.34495	-0.00029543	856.4410377531244	52.347	0.71063	52.347	52.085	52.796	0					22	13	2	0	0	0	0.84294	1	18675	18675		37.974	14.826	1	2607100		+	38015	582	27797	28029	37068	37068					0.00029816735138865624
NVPGEIVE	8	Unmodified	_NVPGEIVE_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-SECPEP	A375_MHC_IP_R2	2	856.1458129882812	1	856.441074	855.433798	-0.91184	-0.00078094	0.3152	0.00026995	-0.59663	-0.00051098	856.4413110300961	51.69	0.76367	52.442	52.118	52.882	0.75225					20	14	2	0	0	0	0.87643	1	19568	19568		25.399	3.6527	1	2264500		+	38016	582	27797	28029	37069	37069					0.00029816735138865624
NVPHSPARAS	10	Unmodified	_NVPHSPARAS_					0	0	0		ENST00000410062.8_1_2:181845483-181845630:+|nuORF	ENST00000410062.8_1_2:181845483-181845630:+|nuORF	ENST00000410062.8_1_2:181845483-181845630:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1036.231201171875	1	1035.53302	1034.52574	0.11237	0.00011637	1.8472	0.0019128	1.9595	0.0020292	1035.5340322658499	88.591	0.45555	89.323	89.077	89.533	0.7318					11	8	2	0	0	0	0.71361	1	33757	33757		6.2058	0.44535	1	1453700			38017	11642	27798	28030	37070	37070					0.009859198721869689
NVQLKTLEC	9	Unmodified	_NVQLKTLEC_					0	0	0			REV__GP1BA|p.D89N|1|0.66|ENSG00000185245|chr17:4932869-4932869|G/A|missense_variant	REV__GP1BA|p.D89N|1|0.66|ENSG00000185245|chr17:4932869-4932869|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	524.2030029296875	2	524.278792	1046.54303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.449	1	68.449	67.949	68.949	0								0	0	0	0.050211	1	24818	24818		53.833	13.883	1		+		38018	26692	27799	28031	37071	37071					0.021620793629836044
NVRNCIRFY	9	Unmodified	_NVRNCIRFY_					0	0	0		ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;ENST00000570934.5_1_17:4098183-4145738:-|nuORF	ENSG00000185722|ENST00000341657|ANKFY1	ENSG00000185722|ENST00000341657|ANKFY1	MSMS	A375_MHC_IP_R1	1	592.7423095703125	2	592.8033	1183.59205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.168	1	50.168	49.668	50.668	0								0	0	0	0.15486	1	17765	17765		4.3292	0.38484	1				38019	8687	27800	28032	37072	37072					0.007594124425850168
NVRRHMCSF	9	Unmodified	_NVRRHMCSF_					0	0	0		ENST00000492807.6_1_6:146720717-146755929:+|nuORF	ENST00000492807.6_1_6:146720717-146755929:+|nuORF	ENST00000492807.6_1_6:146720717-146755929:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	575.6123046875	2	575.273852	1148.53315	-0.5075	-0.00029195	-0.1564	-8.9975E-05	-0.6639	-0.00038193	575.2734581163711	60.315	0.56253	61.06	60.801	61.364	0.74504					17	10	2	0	0	0	0.71541	1	22849	22849		11.64	0.81637	1	1131900			38020	12675	27801	28033	37073	37073					-0.03517387123383742
NVTEPVKT	8	Unmodified	_NVTEPVKT_					0	0	0		ENSG00000032389|ENST00000382125|EIPR1;ENST00000496433.5_1_2:3193107-3197993:-|nuORF	ENSG00000032389|ENST00000382125|EIPR1	ENSG00000032389|ENST00000382125|EIPR1	MSMS	A375_MHC_IP_R1	1	444.2886962890625	2	444.245275	886.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.542	1	45.542	45.042	46.042	0								0	0	0	0.16876	1	15941	15941		4.3292	0	1				38021	1116	27802	28034	37074	37074					0.028217921435384596
NVTSVHLF	8	Unmodified	_NVTSVHLF_					0	0	0		ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	MULTI-SECPEP	A375_MHC_IP_R2	2	459.36993408203125	2	458.747985	915.481417	-0.40296	-0.00018486	-0.94676	-0.00043433	-1.3497	-0.00061918	458.74771204219064	40.01	0.35443	40.784	40.626	40.98	0.77451					10	6	2	0	0	0	0.93416	1	14759	14759		20.871	20.871	1	1285600			38022	3906	27803	28035	37075	37075					0.02029515725996589
NVVQIRGLIV	10	Unmodified	_NVVQIRGLIV_					0	0	0			REV__HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|410|3|anti-sense	REV__HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|410|3|anti-sense	MULTI-SECPEP	A375_MHC_IP_R1	1	370.98040771484375	3	370.904636	1109.69208	0.23986	8.8965E-05	0.095907	3.5572E-05	0.33577	0.00012454	370.90452138395733	39.515	0.40555	39.515	39.289	39.694	0					11	7	2	0	0	0	0.94163	1	13473	13473		6.1918	2.6048	1	1215000	+		38023	26740	27804	28036	37076	37076					0.14161973048044274
NVWLKQEW	8	Unmodified	_NVWLKQEW_					0	0	0		nc|ENSG00000117971|P30926-2|CHRNB4;ENST00000560511.5_1_15:78923416-78927882:-|nuORF;ENSG00000147432|ENST00000289957|CHRNB3;ENSG00000117971|ENST00000261751|CHRNB4;nc|ENSG00000120903|Q15822-2|CHRNA2;ENSG00000120903|ENST00000407991|CHRNA2;ENSG00000169684|ENST00000299565|CHRNA5	nc|ENSG00000117971|P30926-2|CHRNB4;nc|ENSG00000120903|Q15822-2|CHRNA2;ENSG00000169684|ENST00000299565|CHRNA5	ENSG00000169684|ENST00000299565|CHRNA5	MULTI-MSMS	A375_MHC_IP_R2	2	552.6876220703125	2	551.787641	1101.56073	-1.14	-0.00062902	0.16164	8.919E-05	-0.97833	-0.00053983	551.7876255308228	34.149	0.86459	34.901	34.55	35.414	0.75225					52	16	4	0	0	0	0.77488	1	12221	12221		13.508	0.97634	1	86763000			38024	7430;3696;14562	27805	28037	37077	37077					0.0140116268012207
NVYEDEIN	8	Unmodified	_NVYEDEIN_					0	0	0		ENST00000447301.2_1_X:63843342-63843906:+|nuORF	ENST00000447301.2_1_X:63843342-63843906:+|nuORF	ENST00000447301.2_1_X:63843342-63843906:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	498.20574951171875	2	498.219454	994.424355	-0.46984	-0.00023408	0.24601	0.00012257	-0.22383	-0.00011151	498.2195920663399	36.977	1.9341	36.977	36.592	38.526	0					101	37	5	0	0	0	0.77624	1	12913	12913		8.5933	0	1	272220000			38025	12044	27806	28038	37078	37078					-0.07307996341046419
NVYIFPGVALA	11	Unmodified	_NVYIFPGVALA_					0	0	0		ENSG00000082212|ENST00000321341|ME2	ENSG00000082212|ENST00000321341|ME2	ENSG00000082212|ENST00000321341|ME2	MSMS	A375_MHC_IP_R1	1	388.6278381347656	3	388.553492	1162.63865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.245	1	42.245	41.745	42.745	0								0	0	0	0.16166	1	14630	14630		5.0475	0	1				38026	1755	27807	28039	37079	37079					0.06383175545533959
NVYNEPDGI	9	Unmodified	_NVYNEPDGI_					0	0	0		XYLT1|p.D636N|1|0.23|ENSG00000103489|chr16:17134594-17134594|C/T|missense_variant	XYLT1|p.D636N|1|0.23|ENSG00000103489|chr16:17134594-17134594|C/T|missense_variant	XYLT1|p.D636N|1|0.23|ENSG00000103489|chr16:17134594-17134594|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	510.6702575683594	2	510.735271	1019.45599	-0.8241	-0.0004209	0.14163	7.2335E-05	-0.68247	-0.00034856	510.7353155063299	66.854	0.71122	67.591	67.24	67.951	0.73631					31	13	3	0	0	0	0.4867	1	25231	25231		20.454	2.3073	1	4286900			38027	30173	27808	28040	37080	37080					-0.05296003587102405
NVYSNLYNW	9	Unmodified	_NVYSNLYNW_					0	0	0		ENSG00000084674|ENST00000233242|APOB;APOB|p.F2409Lfs*15|1|0.3|ENSG00000084674|chr2:21009641-21009641|A/-|frameshift_variant	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-SECPEP	A375_MHC_IP_R1	1	587.1332397460938	2	586.772188	1171.52982	-0.47295	-0.00027751	-3.4267	-0.0020107	-3.8996	-0.0022882	586.769869304893	28.927	0.35413	28.927	28.795	29.149	0					9	6	2	0	0	0	0.62767	1	9039	9039		11.64	0	1	888700			38028	1799	27809	28041	37081	37081					-0.04908035424773516
NWEIKKKF	8	Unmodified	_NWEIKKKF_					0	0	0			REV__ENSG00000152078|ENST00000370203|TLCD4	REV__ENSG00000152078|ENST00000370203|TLCD4	MULTI-MSMS	A375_MHC_IP_R2	2	364.5830383300781	3	364.878198	1091.61277	0.033671	1.2286E-05	-0.50913	-0.00018577	-0.47545	-0.00017348	365.2128880704113	27.703	0.91407	28.382	27.792	28.706	0.67857					24	15	4	0	0	0	0.77602	1	9231	9231		9.3831	0.40688	1	2501200	+		38029	19789	27810	28042	37082	37082					0.0706232609388735
NWEIKKKF	8	Unmodified	_NWEIKKKF_					0	0	0			REV__ENSG00000152078|ENST00000370203|TLCD4	REV__ENSG00000152078|ENST00000370203|TLCD4	MULTI-MATCH	A375_MHC_IP_R1	1		3	364.878198	1091.61277	0.28286	0.00010321	0.88354	0.00032239	1.1664	0.00042559	364.87875442452656	28.566	0.60665	28.566	28.138	28.745	0	0.092179	0.00058053	NaN	9.3831	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2639900	+		38030	19789	27810	28042							0.0706232609388735
NWESDSTNS	9	Unmodified	_NWESDSTNS_					0	0	0			REV__nc|ENSG00000188158|Q6T4R5-4|NHS	REV__nc|ENSG00000188158|Q6T4R5-4|NHS	MULTI-SECPEP	A375_MHC_IP_R2	2	520.6013793945312	2	520.201793	1038.38903	-0.85635	-0.00044548	-0.44459	-0.00023128	-1.3009	-0.00067675	520.2015058365088	36.348	0.71366	37.119	36.799	37.513	0.7709					39	13	4	0	0	0	0.75164	1	13189	13189		13.906	0.86358	1	20614000	+		38031	22074	27811	28043	37083	37083					-0.1286265886885758
NWFMQESP	8	Unmodified	_NWFMQESP_					0	0	0			REV__ENSG00000004961|ENST00000380762|HCCS	REV__ENSG00000004961|ENST00000380762|HCCS	MULTI-SECPEP	A375_MHC_IP_R2	2	520.1399536132812	2	519.72111	1037.42767	-0.51022	-0.00026517	-0.35564	-0.00018483	-0.86587	-0.00045001	519.7208810011259	46.641	0.35637	47.405	47.209	47.565	0.76397					10	6	2	0	0	0	0.95423	1	17508	17508		18.135	5.6034	1	1277600	+		38032	16106	27812	28044	37084	37084					-0.08955024768033581
NWHYCDGYD	9	Unmodified	_NWHYCDGYD_					0	0	0		ENSG00000185681|ENST00000373764|MORN5;nc|ENSG00000185681|Q5VZ52-2|MORN5	ENSG00000185681|ENST00000373764|MORN5	ENSG00000185681|ENST00000373764|MORN5	MSMS	A375_MHC_IP_R2	2	586.8055419921875	2	586.708731	1171.40291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.314	1	83.057	82.557	83.557	0.74293								0	0	0	0.15486	1	31268	31268		2.0598	0	1				38033	8684	27813	28045	37085	37085					-0.175937046413992
NWILRTASQR	10	Unmodified	_NWILRTASQR_					0	0	0		ENST00000324685.10_1_16:30786705-30787371:+|nuORF	ENST00000324685.10_1_16:30786705-30787371:+|nuORF	ENST00000324685.10_1_16:30786705-30787371:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	415.2713317871094	3	415.566794	1243.67855	-0.032196	-1.338E-05	1.2987	0.0005397	1.2665	0.00052632	415.5670249719799	30.654	0.45351	31.373	31.013	31.467	0.71857					11	8	2	0	0	0	0.92199	1	10777	10777		14.957	5.1929	1	1495300			38034	10718	27814	28046	37086	37086					0.06646115268790709
NWILRTASQR	10	Unmodified	_NWILRTASQR_					0	0	0		ENST00000324685.10_1_16:30786705-30787371:+|nuORF	ENST00000324685.10_1_16:30786705-30787371:+|nuORF	ENST00000324685.10_1_16:30786705-30787371:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	415.566794	1243.67855	0.35936	0.00014934	3.2658	0.0013572	3.6252	0.0015065	415.5680932056485	31.621	0.25348	31.621	31.465	31.718	0	0.1238	0.00010822	NaN	14.957	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1741900			38035	10718	27814	28046							0.06646115268790709
NWIRHKEL	8	Unmodified	_NWIRHKEL_					0	0	0			REV__ZNF512B|p.K425Nfs*25|1|0.45|ENSG00000196700|chr20:63964380-63964381|TC/-|frameshift_variant	REV__ZNF512B|p.K425Nfs*25|1|0.45|ENSG00000196700|chr20:63964380-63964381|TC/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	365.9607849121094	3	365.873447	1094.59851	-0.045106	-1.6503E-05	0.30497	0.00011158	0.25986	9.5076E-05	365.87354494569274	36.093	0.40849	36.863	36.747	37.155	0.76929					12	7	3	0	0	0	0.95423	1	13105	13105		13.906	10.31	1	1726300	+		38036	22225	27815	28047	37087	37087					0.05499673665599403
NWKKKLQVLE	10	Unmodified	_NWKKKLQVLE_					0	0	0		ENSG00000141200|ENST00000268919|KIF2B	ENSG00000141200|ENST00000268919|KIF2B	ENSG00000141200|ENST00000268919|KIF2B	MSMS	A375_MHC_IP_R1	1	429.29119873046875	3	429.259079	1284.75541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.52	1	137.52	137.02	138.02	0								0	0	0	0.1562	1	52932	52932		0.69767	0	1				38037	5220	27816	28048	37088	37088					0.12441913765246682
NWKQFLTS	8	Unmodified	_NWKQFLTS_					0	0	0		nc|ENSG00000186976|Q5THR3-6|EFCAB6;ENST00000404038.5_1_22:44079617-44178198:-|nuORF;nc|ENSG00000186976|Q5THR3-5|EFCAB6;nc|ENSG00000186976|Q5THR3-2|EFCAB6;ENSG00000186976|ENST00000262726|EFCAB6	nc|ENSG00000186976|Q5THR3-6|EFCAB6	nc|ENSG00000186976|Q5THR3-6|EFCAB6	MULTI-MSMS	A375_MHC_IP_R1	1	512.6664428710938	2	512.266542	1022.51853	-0.29875	-0.00015304	-0.14928	-7.6473E-05	-0.44803	-0.00022951	512.2664662060095	70.279	0.51094	70.279	69.983	70.494	0					15	9	2	0	0	0	0.74466	1	25531	25531		21.747	0	1	2587500			38038	8795	27817	28049	37089	37089					0.00817187271752573
NWLISFAP	8	Unmodified	_NWLISFAP_					0	0	0			REV__ENST00000407775.6_1_8:106815204-106815279:+|nuORF	REV__ENST00000407775.6_1_8:106815204-106815279:+|nuORF	MSMS	A375_MHC_IP_R1	1	474.152099609375	2	474.252903	946.491253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.08	1	135.08	134.58	135.58	0								0	0	0	0.16876	1	52087	52087		12.532	0	1		+		38039	24453	27818	28050	37090	37090					0.015867037313796573
NWLNAAIECL	10	Unmodified	_NWLNAAIECL_					0	0	0		ENSG00000166153|ENST00000550587|DEPDC4	ENSG00000166153|ENST00000550587|DEPDC4	ENSG00000166153|ENST00000550587|DEPDC4	MULTI-SECPEP	A375_MHC_IP_R1	1	573.2813720703125	2	573.784241	1145.55393	0.0080493	4.6185E-06	2.1255	0.0012196	2.1335	0.0012242	573.785416789474	68.944	0.40487	68.944	68.819	69.224	0					10	7	2	0	0	0	0.83086	1	25077	25077		10.824	6.4947	1	1053900			38040	7030	27819	28051	37091	37091					-0.013025182627643517
NWQLHLSQELQ	11	Unmodified	_NWQLHLSQELQ_					0	0	0		ENST00000373115.4_1_10:73772609-73772870:+|nuORF	ENST00000373115.4_1_10:73772609-73772870:+|nuORF	ENST00000373115.4_1_10:73772609-73772870:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	466.9596252441406	3	465.905364	1394.69426	-0.9225	-0.0004298	0.11022	5.1353E-05	-0.81228	-0.00037844	465.90537357804914	19.054	0.40093	19.658	19.483	19.884	0.60308					19	7	4	0	0	0	0.73327	1	5752	5752		2.9264	0.29513	1	24473000			38041	11223	27820	28052	37092	37092					0.012703569951781901
NWRPRFKYYHW	11	Unmodified	_NWRPRFKYYHW_					0	0	0		nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;nc|ENSG00000124067|Q9UP95-4|SLC12A4	nc|ENSG00000124067|Q9UP95-3|SLC12A4	nc|ENSG00000124067|Q9UP95-3|SLC12A4	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1301879882812	3	551.612626	1651.81605	-0.69907	-0.00038562	2.4738	0.0013646	1.7748	0.00097899	551.9478246236453	64.265	0.30607	65.005	64.902	65.208	0.74022					8	5	2	0	0	0	1.0004	1	24337	24337		2.6312	2.1253	1	742230			38042	3868	27821	28053	37093	37093					0.016214438682254695
NWRPRFRYYHW	11	Unmodified	_NWRPRFRYYHW_					0	0	0		nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6;ENST00000560023.1_1_15:34533432-34537514:-|nuORF;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000124140|Q9H2X9|SLC12A5;ENSG00000124140|ENST00000243964|SLC12A5	nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000124140|Q9H2X9|SLC12A5	nc|ENSG00000140199|Q9UHW9-3|SLC12A6	MSMS	A375_MHC_IP_R1	1	841.3236694335938	2	840.918375	1679.8222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.35	1	121.35	120.85	121.85	0								0	0	0	0.16358	1	45055	45055		0.30703	0.30703	1				38043	5129;3871	27822	28054	37094	37094					0.00947962099758115
NWRRKRRWKRD	11	Unmodified	_NWRRKRRWKRD_					0	0	0			REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF	REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	553.3875732421875	3	552.985457	1655.93454	-0.83328	-0.00046079	1.2643	0.00069914	0.43101	0.00023834	552.9880455513148	135.26	1.0668	135.26	134.78	135.84	0					56	20	5	0	0	0	0.73925	2	52139	52139;52200		0.08335	0.08335	1	8096500	+		38044	26065	27823	28055	37095;37096	37095					0.1328123589655661
NWRRKRRWKRD	11	Unmodified	_NWRRKRRWKRD_					0	0	0			REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF	REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	552.6929931640625	3	552.985457	1655.93454	-0.83328	-0.00046079	1.2643	0.00069914	0.43101	0.00023834	552.9880455513148	135.26	1.0668	135.26	134.78	135.84	0					56	20	5	0	0	0	1.0015	1	52067	52067		0.08335	0.08335	1	8096500	+		38045	26065	27823	28055	37097	37097					0.1328123589655661
NWRRKRRWKRD	11	Unmodified	_NWRRKRRWKRD_					0	0	0			REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF	REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	553.3873901367188	3	552.985457	1655.93454	-0.64932	-0.00035906	1.8896	0.0010449	1.2403	0.00068587	553.320568381672	135.16	1.0665	135.3	134.85	135.92	0.13901					53	20	3	0	0	0	0.73925	2	53153	53153;53214		0.08335	0.08335	1	5631500	+		38046	26065	27823	28055	37098;37099	37098					0.1328123589655661
NWRRKRRWKRD	11	Unmodified	_NWRRKRRWKRD_					0	0	0			REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF	REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	552.6923217773438	3	552.985457	1655.93454	-0.64932	-0.00035906	1.8896	0.0010449	1.2403	0.00068587	553.320568381672	135.16	1.0665	135.3	134.85	135.92	0.13901					53	20	3	0	0	0	1.0015	1	53170	53170		0.08335	0.08335	1	5631500	+		38047	26065	27823	28055	37100	37100					0.1328123589655661
NWRYHKRVRRW	11	Unmodified	_NWRYHKRVRRW_					0	0	0			REV__ENST00000396757.5_1_9:35615990-35616170:-|nuORF	REV__ENST00000396757.5_1_9:35615990-35616170:-|nuORF	MSMS	A375_MHC_IP_R2	2	828.892333984375	2	828.958366	1655.90218	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.16	1	116.82	116.32	117.32	0.65962								0	0	0	0.16354	1	43833	43833		0.30703	0.30703	1		+		38048	24345	27824	28056	37101	37101					0.1004644849356282
NWVIQKAWT	9	Unmodified	_NWVIQKAWT_					0	0	0			REV__ENST00000426382.2_1_X:67290587-67290683:-|nuORF	REV__ENST00000426382.2_1_X:67290587-67290683:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	573.2813720703125	2	573.308741	1144.60293	0.11435	6.5559E-05	0.16886	9.6809E-05	0.28321	0.00016237	573.8103173869538	69.171	0.55776	69.171	68.769	69.326	0					19	10	3	0	0	0	0.54799	1	25077	25077		24.021	4.7636	1	1948800	+		38049	24651	27825	28057	37102	37102					0.03641138088505613
NWVIQKAWT	9	Unmodified	_NWVIQKAWT_					0	0	0			REV__ENST00000426382.2_1_X:67290587-67290683:-|nuORF	REV__ENST00000426382.2_1_X:67290587-67290683:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	573.308741	1144.60293	-0.1318	-7.5565E-05	1.8055	0.0010351	1.6737	0.00095957	573.8111742059974	68.485	0.65903	69.221	68.714	69.373	0.73511	0.024585	0.0017602	NaN	24.021	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	854100	+		38050	24651	27825	28057							0.03641138088505613
NYAGLYVFY	9	Unmodified	_NYAGLYVFY_					0	0	0			REV__ENSG00000197208|ENST00000200652|SLC22A4	REV__ENSG00000197208|ENST00000200652|SLC22A4	MULTI-SECPEP	A375_MHC_IP_R1	1	555.9300537109375	2	555.26875	1108.52295	-0.616	-0.00034205	-0.90525	-0.00050266	-1.5213	-0.00084471	555.2684422476889	52.537	0.65923	52.537	52.085	52.744	0					15	12	2	0	0	0	0.60012	1	18714	18714		18.135	3.2967	1	2835700	+		38051	22271	27826	28058	37103	37103					-0.026973483053325253
NYAKLIPGATV	11	Unmodified	_NYAKLIPGATV_					0	0	0		nc|ENSG00000115221|P18564-2|ITGB6;ENSG00000115221|ENST00000283249|ITGB6	nc|ENSG00000115221|P18564-2|ITGB6	nc|ENSG00000115221|P18564-2|ITGB6	MULTI-SECPEP	A375_MHC_IP_R1	1	383.28912353515625	3	382.888763	1145.64446	0.39691	0.00015197	0.13612	5.2119E-05	0.53303	0.00020409	382.88880509352174	50.996	1.0641	50.996	50.663	51.728	0					34	20	2	0	0	0	0.95991	1	18081	18081		7.0371	0.41363	1	1761500			38052	3283	27827	28059	37104	37104					0.07746274057171831
NYDLLELI	8	Unmodified	_NYDLLELI_					0	0	0		tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1	tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1	tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	496.68182373046875	2	496.768583	991.522613	-0.25306	-0.00012571	1.5158	0.00075299	1.2627	0.00062727	496.7694627338687	43.454	0.91592	43.454	42.841	43.757	0					27	17	2	0	0	0	0.74945	1	15083	15083		20.454	2.3073	1	4545500			38053	29869	27828	28060	37105	37105					0.026512319748235313
NYFDRIITN	9	Unmodified	_NYFDRIITN_					0	0	0			REV__ENSG00000165215|ENST00000395145|CLDN3	REV__ENSG00000165215|ENST00000395145|CLDN3	MULTI-SECPEP	A375_MHC_IP_R1	1	577.669677734375	2	578.293288	1154.57202	-0.016348	-9.454E-06	0.050277	2.9075E-05	0.033929	1.9621E-05	578.293254554364	78.529	0.85938	78.529	78.251	79.111	0					31	16	4	0	0	0	0.69507	1	28831	28831		19.257	5.3509	1	9217400	+		38054	20561	27829	28061	37106	37106					0.0009193998364480649
NYGALLREL	9	Unmodified	_NYGALLREL_					0	0	0		ENSG00000132329|ENST00000254661|RAMP1	ENSG00000132329|ENST00000254661|RAMP1	ENSG00000132329|ENST00000254661|RAMP1	MULTI-SECPEP	A375_MHC_IP_R1	1	525.192138671875	2	524.792924	1047.57129	-0.37549	-0.00019706	-0.49675	-0.00026069	-0.87224	-0.00045775	524.7925226904375	88.587	0.61125	88.587	88.256	88.867	0					22	11	3	0	0	0	0.43207	1	32499	32499		40.239	16.219	1	7598700			38055	4392	27830	28062	37107	37107					0.04941145334578323
NYGALLREL	9	Unmodified	_NYGALLREL_					0	0	0		ENSG00000132329|ENST00000254661|RAMP1	ENSG00000132329|ENST00000254661|RAMP1	ENSG00000132329|ENST00000254661|RAMP1	MULTI-SECPEP	A375_MHC_IP_R2	2	525.1925048828125	2	524.792924	1047.57129	-0.41316	-0.00021682	-0.64545	-0.00033873	-1.0586	-0.00055555	524.7925670951405	87.703	0.65663	88.435	88.066	88.722	0.7318					31	12	4	0	0	0	0.062502	1	33348	33348		83.429	31.799	1	5456500			38056	4392	27830	28062	37108	37108					0.04941145334578323
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	A375_MHC_IP_R1	1	390.2888488769531	3	389.888874	1166.64479	0.1742	6.7918E-05	0.3918	0.00015276	0.566	0.00022068	389.88892228842167	73.348	1.5705	73.348	72.88	74.451	0					94	30	6	0	0	0	0.047455	1	26633	26633		70.332	33.826	1	110690000			38057	1093	27831	28063	37109	37109					0.06813693777053231
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	A375_MHC_IP_R1	1	584.7296142578125	2	584.329673	1166.64479	-0.24448	-0.00014286	0.14651	8.5609E-05	-0.097975	-5.7249E-05	584.3296649076995	73.314	0.96318	73.314	72.98	73.943	0					56	18	5	0	0	0	0.019499	1	26634	26634		103.42	38.184	1	51173000			38058	1093	27831	28063	37110	37110					0.06813693777053231
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R2	2	584.72900390625	2	584.329673	1166.64479	-0.6047	-0.00035335	0.12985	7.5877E-05	-0.47485	-0.00027747	584.3296725698152	72.44	0.91308	73.175	72.821	73.734	0.73541					52	17	5	0	0	0	0.0013431	1	27441	27441		140.63	58.104	1	43344000			38059	1093	27831	28063	37111	37111					0.06813693777053231
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	A375_MHC_IP_R2	2	390.2886962890625	3	389.888874	1166.64479	-0.30485	-0.00011886	0.2493	9.7198E-05	-0.055549	-2.1658E-05	389.8889607849344	72.459	1.6256	73.194	72.771	74.396	0.73541					73	31	3	0	0	0	0.053904	1	27426	27426		59.368	30.874	1	101640000			38060	1093	27831	28063	37112	37112					0.06813693777053231
NYIEFTRIL	9	Unmodified	_NYIEFTRIL_					0	0	0		ENSG00000118680|ENST00000237500|MYL12B;ENSG00000101608|ENST00000217652|MYL12A	ENSG00000118680|ENST00000237500|MYL12B	ENSG00000118680|ENST00000237500|MYL12B	MULTI-SECPEP	A375_MHC_IP_R1	1	585.2210693359375	2	584.821681	1167.62881	-0.095881	-5.6073E-05	0.025726	1.5045E-05	-0.070155	-4.1028E-05	584.8215684613814	106.09	0.61388	106.09	105.86	106.47	0					25	11	3	0	0	0	0.18129	1	38929	38929		61.09	23.116	1	6716400			38061	2313	27832	28064	37113	37113					0.05169987540148213
NYIEFTRIL	9	Unmodified	_NYIEFTRIL_					0	0	0		ENSG00000118680|ENST00000237500|MYL12B;ENSG00000101608|ENST00000217652|MYL12A	ENSG00000118680|ENST00000237500|MYL12B	ENSG00000118680|ENST00000237500|MYL12B	MULTI-SECPEP	A375_MHC_IP_R2	2	585.2213745117188	2	584.821681	1167.62881	-0.44207	-0.00025853	0.18692	0.00010932	-0.25515	-0.00014922	584.8216634644639	105.22	0.65982	105.99	105.72	106.38	0.76308					27	12	4	0	0	0	0.601	1	39797	39797		32.037	10.291	1	6271500			38062	2313	27832	28064	37114	37114					0.05169987540148213
NYIINGDN	8	Unmodified	_NYIINGDN_					0	0	0			REV__tr|U7SS54|U7SS54_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01548PE=4SV=1	REV__tr|U7SS54|U7SS54_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01548PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	462.1164855957031	2	461.716882	921.41921	-0.17089	-7.8903E-05	-0.19983	-9.2265E-05	-0.37072	-0.00017117	461.71663109584	79.425	0.51462	79.425	79.161	79.676	0					16	9	2	0	0	0	0.972	1	29010	29010		14.838	14.838	1	1746500	+		38063	28418	27833	28065	37115	37115					-0.04464255412995044
NYIINGDN	8	Unmodified	_NYIINGDN_					0	0	0			REV__tr|U7SS54|U7SS54_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01548PE=4SV=1	REV__tr|U7SS54|U7SS54_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01548PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	461.716882	921.41921	-0.42061	-0.0001942	-0.26432	-0.00012204	-0.68493	-0.00031624	461.7167311023402	78.667	0.50755	79.412	79.134	79.642	0.74474	-0.0065123	-1.8913E-05	NaN	14.838	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1288900	+		38064	28418	27833	28065							-0.04464255412995044
NYISGIQTI	9	Unmodified	_NYISGIQTI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-SECPEP	A375_MHC_IP_R2	2	505.1706237792969	2	504.771657	1007.52876	-0.60397	-0.00030487	-0.28996	-0.00014637	-0.89393	-0.00045123	504.77146560963763	87.707	0.55591	88.439	88.116	88.671	0.7318					26	10	3	0	0	0	0.011405	1	33329	33329		122.18	29.688	1	7300100			38065	8958	27834	28066	37116	37116					0.025297502063381216
NYKDFDIDKFF	11	Unmodified	_NYKDFDIDKFF_					0	0	0			REV__tr|U7SSI1|U7SSI1_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01276PE=4SV=1	REV__tr|U7SSI1|U7SSI1_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01276PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	484.1737365722656	3	484.566237	1450.67688	-0.17796	-8.6233E-05	0.24015	0.00011637	0.062193	3.0137E-05	484.9003713268619	38.645	0.20327	38.645	38.526	38.73	0					8	3	3	0	0	0	0.99916	1	13118	13118		2.4348	0.18206	1	895620	+		38066	28430	27835	28067	37117	37117					-0.030429833305106513
NYKQEWFRIKI	11	Unmodified	_NYKQEWFRIKI_					0	0	0			REV__RASSF8|p.E190K|1|0.27|ENSG00000123094|chr12:26064962-26064962|G/A|missense_variant	REV__RASSF8|p.E190K|1|0.27|ENSG00000123094|chr12:26064962-26064962|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	762.917724609375	2	762.919718	1523.82488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.388	1	65.128	64.628	65.628	0.74022								0	0	0	0.16307	1	24412	24412		2.7352	1.4057	1		+		38067	27870	27836	28068	37118	37118					0.08392372714047269
NYKRRRRSWRG	11	Unmodified	_NYKRRRRSWRG_					0	0	0		ENST00000542829.1_2_13:30002925-30054358:+|nuORF	ENST00000542829.1_2_13:30002925-30054358:+|nuORF	ENST00000542829.1_2_13:30002925-30054358:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	512.6907348632812	3	512.290658	1533.85014	-0.32394	-0.00016595	0.45699	0.00023411	0.13306	6.8163E-05	512.2908948605564	54.355	0.45369	54.355	54.063	54.516	0					19	8	3	0	0	0	1.0012	1	19422	19422		1.1098	1.0149	1	4516800			38068	13305	27837	28069	37119	37119					0.10457285079814937
NYLPAINGI	9	Unmodified	_NYLPAINGI_					0	0	0		nc|ENSG00000079332|Q9NR31-2|SAR1A;ENSG00000079332|ENST00000373241|SAR1A;ENSG00000152700|ENST00000402673|SAR1B	nc|ENSG00000079332|Q9NR31-2|SAR1A	nc|ENSG00000079332|Q9NR31-2|SAR1A	MULTI-MSMS	A375_MHC_IP_R1	1	488.1689453125	2	487.768917	973.523281	-0.015991	-7.7999E-06	0.35744	0.00017435	0.34145	0.00016655	487.76908460166607	107.96	0.50777	107.96	107.75	108.26	0					20	9	3	0	0	0	0.03063	1	39617	39617		74.423	38.296	1	2755900			38069	1693	27838	28070	37120	37120					0.03546071414530161
NYLPAINGI	9	Unmodified	_NYLPAINGI_					0	0	0		nc|ENSG00000079332|Q9NR31-2|SAR1A;ENSG00000079332|ENST00000373241|SAR1A;ENSG00000152700|ENST00000402673|SAR1B	nc|ENSG00000079332|Q9NR31-2|SAR1A	nc|ENSG00000079332|Q9NR31-2|SAR1A	MULTI-MSMS	A375_MHC_IP_R1	1	974.732666015625	1	974.530558	973.523281	0.38437	0.00037459	0.50371	0.00049088	0.88808	0.00086546	974.5308414396252	107.96	0.55837	107.96	107.7	108.26	0					17	10	2	0	0	0	0.05754	1	39705	39705		61.357	33.729	1	4664400			38070	1693	27838	28070	37121	37121					0.03546071414530161
NYLPAINGI	9	Unmodified	_NYLPAINGI_					0	0	0		nc|ENSG00000079332|Q9NR31-2|SAR1A;ENSG00000079332|ENST00000373241|SAR1A;ENSG00000152700|ENST00000402673|SAR1B	nc|ENSG00000079332|Q9NR31-2|SAR1A	nc|ENSG00000079332|Q9NR31-2|SAR1A	MULTI-MATCH	A375_MHC_IP_R2	2		1	974.530558	973.523281	-0.10681	-0.00010409	0.2176	0.00021206	0.11079	0.00010797	974.5304447740484	107.25	0.45683	108.01	107.74	108.2	0.75436	0.021276	-0.00012563	NaN	61.357	21	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5164000			38071	1693	27838	28070							0.03546071414530161
NYLTQCHCY	9	Unmodified	_NYLTQCHCY_					0	0	0		ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	MSMS	A375_MHC_IP_R2	2	572.6300659179688	2	572.731151	1143.44775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.909	1	46.674	46.174	47.174	0.76519								0	0	0	0.15468	1	17177	17177		13.906	0	1				38072	1926	27839	28071	37122	37122					-0.11823597099714789
NYLVGFCPEGP	11	Unmodified	_NYLVGFCPEGP_					0	0	0		ENSG00000187959|ENST00000344935|CPSF4L;ENST00000484112.5_1_7:99037182-99048419:+|nuORF;ENST00000471455.1_1_7:99042440-99051625:+|nuORF;nc|ENSG00000160917|O95639-3|CPSF4;nc|ENSG00000160917|O95639-2|CPSF4;ENSG00000160917|ENST00000292476|CPSF4	ENSG00000187959|ENST00000344935|CPSF4L	ENSG00000187959|ENST00000344935|CPSF4L	MSMS	A375_MHC_IP_R1	1	399.1302490234375	3	399.186592	1194.53795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.99	1	98.99	98.49	99.49	0								0	0	0	0.16302	1	36367	36367		1.2148	0.14337	1				38073	8870	27840	28072	37123	37123					-0.051542244996426234
NYRQLLRR	8	Unmodified	_NYRQLLRR_					0	0	0			REV__ENSG00000163554|ENST00000643759|SPTA1	REV__ENSG00000163554|ENST00000643759|SPTA1	MULTI-MSMS	A375_MHC_IP_R1	1	373.60504150390625	3	373.55623	1117.64686	0.90628	0.00033855	1.8726	0.00069953	2.7789	0.0010381	373.55674835819633	44.862	0.35357	44.862	44.626	44.98	0					9	6	2	0	0	0	0.77703	1	15580	15580		5.7319	0.68433	1	918630	+		38074	20378	27841	28073	37124	37124					0.09274167305511583
NYSCMISAIV	10	Unmodified	_NYSCMISAIV_					0	0	0			REV__ENSG00000188641|ENST00000370192|DPYD	REV__ENSG00000188641|ENST00000370192|DPYD	MULTI-MSMS	A375_MHC_IP_R2	2	551.2578125	2	550.759378	1099.5042	-0.56381	-0.00031052	-0.47044	-0.0002591	-1.0342	-0.00056962	550.7594566542683	94.443	0.75921	95.188	94.667	95.426	0.74474					19	14	2	0	0	0	0.70496	1	35938	35938		10.074	0	1	1425400	+		38075	22104	27842	28074	37125	37125					-0.04156969263067367
NYSMNMQPEDV	11	Unmodified	_NYSMNMQPEDV_					0	0	0		nc|ENSG00000176654|Q8N7R0|NANOGP1;nc|ENSG00000111704|Q9H9S0-2|NANOG;ENSG00000255192|ENST00000528386|NANOGP8;ENSG00000111704|ENST00000229307|NANOG	nc|ENSG00000176654|Q8N7R0|NANOGP1	nc|ENSG00000176654|Q8N7R0|NANOGP1	MSMS	A375_MHC_IP_R2	2	664.2940673828125	2	664.268295	1326.52204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.53	1	138.61	138.11	139.11	0.083969								0	0	0	0.16312	1	54318	54318		2.4985	0.21571	1				38076	3021	27843	28075	37126	37126					-0.1281629879886168
NYSPYRDR	8	Unmodified	_NYSPYRDR_					0	0	0		ENSG00000072315|ENST00000262839|TRPC5;TRPC5|p.P19S|1|0.26|ENSG00000072315|chrX:111952366-111952366|G/A|missense_variant	ENSG00000072315|ENST00000262839|TRPC5	ENSG00000072315|ENST00000262839|TRPC5	MSMS	A375_MHC_IP_R2	2	535.651123046875	2	535.75433	1069.49411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.516	1	87.249	86.749	87.749	0.733								0	0	0	0.16876	1	32901	32901		12.532	1.7076	1				38077	1536	27844	28076	37127	37127					-0.037860728817804556
NYSRVYCQY	9	Unmodified	_NYSRVYCQY_					0	0	0		ENST00000545356.5_1_6:56918301-56918409:+|nuORF	ENST00000545356.5_1_6:56918301-56918409:+|nuORF	ENST00000545356.5_1_6:56918301-56918409:+|nuORF	MSMS	A375_MHC_IP_R1	1	598.2589721679688	2	598.263673	1194.51279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.42	1	128.42	127.92	128.92	0								0	0	0	0.15486	1	49319	49319		7.9102	3.1541	1				38078	13323	27845	28077	37128	37128					-0.07668279302197334
NYVLRIDAPLP	11	Unmodified	_NYVLRIDAPLP_					0	0	0		ENST00000503010.1_1_5:114951868-114951916:-|nuORF	ENST00000503010.1_1_5:114951868-114951916:-|nuORF	ENST00000503010.1_1_5:114951868-114951916:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	424.6433410644531	3	424.243317	1269.70812	-0.12213	-5.1814E-05	0.049517	2.1007E-05	-0.072615	-3.0807E-05	424.2433440967296	55.127	0.50824	55.127	54.822	55.33	0					17	9	3	0	0	0	0.73149	1	19710	19710		7.4771	0.84669	1	3215600			38079	12804	27846	28078	37129	37129					0.08405634494260994
NYVLRIDAPLP	11	Unmodified	_NYVLRIDAPLP_					0	0	0		ENST00000503010.1_1_5:114951868-114951916:-|nuORF	ENST00000503010.1_1_5:114951868-114951916:-|nuORF	ENST00000503010.1_1_5:114951868-114951916:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	424.64324951171875	3	424.243317	1269.70812	-0.47027	-0.00019951	0.35148	0.00014911	-0.11879	-5.0398E-05	424.2434952619304	54.174	0.40749	54.925	54.661	55.068	0.75084					17	7	3	0	0	0	0.72713	2	20440	20409;20440		11.631	3.686	1	3383500			38080	12804	27846	28078	37130;37131	37131					0.08405634494260994
NYVLRIDAPLP	11	Unmodified	_NYVLRIDAPLP_					0	0	0		ENST00000503010.1_1_5:114951868-114951916:-|nuORF	ENST00000503010.1_1_5:114951868-114951916:-|nuORF	ENST00000503010.1_1_5:114951868-114951916:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	424.243317	1269.70812	-0.12213	-5.1814E-05	0.049517	2.1007E-05	-0.072615	-3.0807E-05	424.2433440967296	55.127	0.50824	55.127	54.822	55.33	0	0.10081	-0.0001526	NaN	11.631	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3215600			38081	12804	27846	28078							0.08405634494260994
NYVNGKTFL	9	Unmodified	_NYVNGKTFL_					0	0	0		ENST00000433579.1_1_7:42952135-42964395:-|nuORF;ENST00000411875.1_1_7:42961455-42966220:-|nuORF;ENSG00000106588|ENST00000223321|PSMA2	ENST00000433579.1_1_7:42952135-42964395:-|nuORF	ENST00000433579.1_1_7:42952135-42964395:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	528.6797485351562	2	528.279649	1054.54475	-0.46708	-0.00024675	-0.34042	-0.00017984	-0.8075	-0.00042659	528.2794484040808	57.088	0.50971	57.088	56.753	57.263	0					22	9	3	0	0	0	0.023846	1	20434	20434		125.53	51.106	1	6606900			38082	2700	27847	28079	37132	37132					0.0196545644323578
NYVNGKTFL	9	Unmodified	_NYVNGKTFL_					0	0	0		ENST00000433579.1_1_7:42952135-42964395:-|nuORF;ENST00000411875.1_1_7:42961455-42966220:-|nuORF;ENSG00000106588|ENST00000223321|PSMA2	ENST00000433579.1_1_7:42952135-42964395:-|nuORF	ENST00000433579.1_1_7:42952135-42964395:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	528.6791381835938	2	528.279649	1054.54475	-0.77248	-0.00040809	-0.43674	-0.00023072	-1.2092	-0.00063881	528.2793545718142	56.168	0.66312	56.918	56.489	57.152	0.75015					25	12	3	0	0	0	0.0098926	1	21217	21217		118.07	43.646	1	8242900			38083	2700	27847	28079	37133	37133					0.0196545644323578
NYVQTEVEG	9	Unmodified	_NYVQTEVEG_					0	0	0			REV__ENSG00000047410|ENST00000367478|TPR	REV__ENSG00000047410|ENST00000367478|TPR	MSMS	A375_MHC_IP_R1	1	519.6661987304688	2	519.740554	1037.46655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.279	1	46.279	45.779	46.779	0								0	0	0	0.15486	1	16228	16228		9.3831	2.66	1		+		38084	16360	27848	28080	37134	37134					-0.05068020932640138
NYYYELWWFWL	11	Unmodified	_NYYYELWWFWL_					0	0	0		nc|ENSG00000166272|Q9NX94|WBP1L;ENSG00000166272|ENST00000448841|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	MSMS	A375_MHC_IP_R1	1	841.8865356445312	2	841.887552	1681.76055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.31	1	105.31	104.81	105.81	0								0	0	0	0.1636	1	38663	38663		0	0	1				38085	7055	27849	28081	37135	37135					-0.053058271627833165
PAAAAAKPV	9	Unmodified	_PAAAAAKPV_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-SECPEP	A375_MHC_IP_R1	1	398.6398010253906	2	398.239796	794.465038	-0.22783	-9.0731E-05	0.28817	0.00011476	0.060338	2.4029E-05	398.2397895638242	34.318	0.40421	34.318	34.103	34.507	0					10	7	2	0	0	0	0.73662	1	11346	11346		9.3474	4.5914	1	1723600			38086	6654	27850	28082	37136	37136					0.05958434559897796
PAAAGGLKI	9	Unmodified	_PAAAGGLKI_					0	0	0		nc|ENSG00000142910|Q9GZM7-2|TINAGL1;ENST00000481165.5_1_1:32050098-32051133:+|nuORF	nc|ENSG00000142910|Q9GZM7-2|TINAGL1	nc|ENSG00000142910|Q9GZM7-2|TINAGL1	MULTI-MSMS	A375_MHC_IP_R1	1	797.5183715820312	1	797.487965	796.480688	-0.55742	-0.00044454	-0.034809	-2.776E-05	-0.59223	-0.0004723	797.4878384985564	68.526	0.55936	68.526	68.26	68.819	0					18	10	2	0	0	0	0.62719	1	24767	24767		13.508	0	1	4959900			38087	12511	27851	28083	37137	37137					0.07430721076946156
PAAAPARTSQ	10	Unmodified	_PAAAPARTSQ_					0	0	0			REV__nc|ENSG00000169696|Q9BZE9-4|ASPSCR1	REV__nc|ENSG00000169696|Q9BZE9-4|ASPSCR1	MULTI-SECPEP	A375_MHC_IP_R2	2	485.1573181152344	2	485.259248	968.503943	-0.69231	-0.00033595	0.53972	0.0002619	-0.15259	-7.4046E-05	485.25940936582856	80.918	0.81467	81.663	81.416	82.231	0.74474					17	15	2	0	0	0	0.92051	1	30793	30793		12.532	6.1774	1	883650	+		38088	20939	27852	28084	37138	37138					0.018431151236200094
PAAAPESPFTC	11	Unmodified	_PAAAPESPFTC_					0	0	0		ENST00000418388.5_1_9:139010502-139010655:-|nuORF	ENST00000418388.5_1_9:139010502-139010655:-|nuORF	ENST00000418388.5_1_9:139010502-139010655:-|nuORF	MSMS	A375_MHC_IP_R2	2	545.7024536132812	2	545.747324	1089.4801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.322	1	82.067	81.567	82.567	0.74432								0	0	0	0.16151	1	30880	30880		10.824	2.9138	1				38089	11707	27853	28085	37139	37139					-0.061064864250511164
PAAASSCNASL	11	Unmodified	_PAAASSCNASL_					0	0	0		ENSG00000172985|ENST00000309415|SH3RF3	ENSG00000172985|ENST00000309415|SH3RF3	ENSG00000172985|ENST00000309415|SH3RF3	MSMS	A375_MHC_IP_R1	1	496.03570556640625	2	496.229299	990.444045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.656	1	87.656	87.156	88.156	0								0	0	0	0.1501	1	32167	32167		20.454	6.9457	1				38090	7755	27854	28086	37140	37140					-0.05155943601926083
PAAATSARKAN	11	Unmodified	_PAAATSARKAN_					0	0	0			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	MSMS	A375_MHC_IP_R2	2	528.8281860351562	2	529.291079	1056.56761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.951	1	19.554	19.054	20.054	0.60308								0	0	0	0.16179	1	5702	5702		9.3831	2.0939	1		+		38091	22015	27855	28087	37141	37141					0.04158475560689112
PAAECQRPRS	10	Unmodified	_PAAECQRPRS_					0	0	0		ENST00000544691.6_1_14:24911464-24911732:-|nuORF	ENST00000544691.6_1_14:24911464-24911732:-|nuORF	ENST00000544691.6_1_14:24911464-24911732:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	372.5970458984375	3	372.185585	1113.53493	0.012848	4.7817E-06	1.0289	0.00038294	1.0417	0.00038772	372.18585959824856	25.765	0.81343	26.425	26.144	26.957	0.65992					18	15	2	0	0	0	0.9269	1	8729	8729		0.62683	0	1	886640			38092	13316	27856	28088	37142	37142					-0.017300548337971122
PAAELLVKHE	10	Unmodified	_PAAELLVKHE_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MSMS	A375_MHC_IP_R2	2	369.4442443847656	3	369.544996	1105.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.49	1	25.134	24.634	25.634	0.64368								0	0	0	0.1552	1	8050	8050		1.9064	0.57673	1		+		38093	21369	27857	28089	37143	37143					0.06457701023077789
PAAHDFPLG	9	Unmodified	_PAAHDFPLG_					0	0	0		ENSG00000136826|ENST00000374672|KLF4;nc|ENSG00000136826|O43474|KLF4;nc|ENSG00000136826|O43474-4|KLF4;ENST00000497048.5_1_9:110248034-110250560:-|nuORF	ENSG00000136826|ENST00000374672|KLF4	ENSG00000136826|ENST00000374672|KLF4	MULTI-SECPEP	A375_MHC_IP_R2	2	463.1318054199219	2	462.732335	923.450116	-0.84918	-0.00039294	0.0049481	2.2897E-06	-0.84423	-0.00039065	462.73228460346024	61.581	0.65497	62.326	62.02	62.675	0.74503					22	12	2	0	0	0	0.40041	1	23295	23295		30.225	0	1	5892900			38094	4823	27858	28090	37144	37144					-0.014670573081048133
PAAHDNTED	9	Unmodified	_PAAHDNTED_					0	0	0			REV__ZNF28|p.K577Nfs*47|1|0.1|ENSG00000198538|chr19:52800114-52800114|T/-|frameshift_variant	REV__ZNF28|p.K577Nfs*47|1|0.1|ENSG00000198538|chr19:52800114-52800114|T/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	485.1573181152344	2	485.199053	968.383553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.092	1	81.836	81.336	82.336	0.74474								0	0	0	0.15486	1	30793	30793		5.2307	0	1		+		38095	22378	27859	28091	37145	37145					-0.10190337660662863
PAAIVQIKV	9	Unmodified	_PAAIVQIKV_					0	0	0			REV__ENSG00000152580|ENST00000282466|IGSF10	REV__ENSG00000152580|ENST00000282466|IGSF10	MULTI-SECPEP	A375_MHC_IP_R2	2	470.20513916015625	2	469.805303	937.596052	-0.67188	-0.00031565	-0.24958	-0.00011725	-0.92146	-0.00043291	469.8051356286519	70.837	0.70883	71.572	71.2	71.908	0.73421					29	13	3	0	0	0	0.40041	1	26817	26817		30.225	0	1	20119000	+		38096	19808	27860	28092	37146	37146					0.12475825207945945
PAAKRMLSP	9	Unmodified	_PAAKRMLSP_					0	0	0		IGSF9B|p.R813H|1|0.21|ENSG00000080854|chr11:133921287-133921287|C/T|missense_variant;nc|ENSG00000080854|Q9UPX0|IGSF9B;ENSG00000080854|ENST00000533871|IGSF9B	IGSF9B|p.R813H|1|0.21|ENSG00000080854|chr11:133921287-133921287|C/T|missense_variant	IGSF9B|p.R813H|1|0.21|ENSG00000080854|chr11:133921287-133921287|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	485.4960632324219	2	485.778762	969.542971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.99	1	83.99	83.49	84.49	0								0	0	0	0.15486	1	30751	30751		8.5933	0	1				38097	1724	27861	28093	37147	37147					0.056981241536277594
PAAKVVPNLIV	11	Unmodified	_PAAKVVPNLIV_					0	0	0			REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	MULTI-SECPEP	A375_MHC_IP_R1	1	560.1800537109375	2	560.858067	1119.70158	-0.68045	-0.00038164	0.25371	0.0001423	-0.42674	-0.00023934	560.8579862251021	86.292	0.75909	86.292	85.971	86.73	0					36	14	4	0	0	0	0.98977	1	31764	31764		3.5965	0	1	12535000	+		38098	20820	27862	28094	37148	37148					0.1465174133356868
PAALLLPRP	9	Unmodified	_PAALLLPRP_					0	0	0		ENST00000273814.7_1_4:953005-953860:-|nuORF	ENST00000273814.7_1_4:953005-953860:-|nuORF	ENST00000273814.7_1_4:953005-953860:-|nuORF	MSMS	A375_MHC_IP_R2	2	474.34149169921875	2	474.30547	946.596387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.486	1	85.222	84.722	85.722	0.73601								0	0	0	0.15486	1	32117	32117		9.3474	0	1				38099	10391	27863	28095	37149	37149					0.12095244927786553
PAALPLRPFP	10	Unmodified	_PAALPLRPFP_					0	0	0			REV__ENST00000518656.5_1_8:22034120-22035374:+|nuORF	REV__ENST00000518656.5_1_8:22034120-22035374:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1078.3966064453125	1	1078.64078	1077.6335	-0.10451	-0.00011273	0.75621	0.00081568	0.6517	0.00070295	1078.644182790183	130.44	0.25388	130.44	130.21	130.46	0					5	4	2	0	0	0	0.69947	1	50174	50174		12.532	3.7861	1	12369000	+		38100	25676	27864	28096	37150	37150					0.09778916473578647
PAALVPPP	8	Unmodified	_PAALVPPP_					0	0	0		ENST00000339381.5_1_1:1268919-1269807:+|nuORF	ENST00000339381.5_1_1:1268919-1269807:+|nuORF	ENST00000339381.5_1_1:1268919-1269807:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	381.6400146484375	2	381.231439	760.448326	0.1545	5.8902E-05	-1.7413	-0.00066382	-1.5867	-0.00060492	381.23194411658415	19.293	0.19848	19.293	19.221	19.42	0					7	5	2	0	0	0	0.90851	1	4763	4763		11.114	0	1	2226600			38101	10846	27865	28097	37151	37151					0.05851933673943677
PAAPAFGG	8	Unmodified	_PAAPAFGG_					0	0	0		nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	MULTI-SECPEP	A375_MHC_IP_R2	2	687.7457275390625	1	687.346052	686.338775	-0.74658	-0.00051316	0.47328	0.00032531	-0.2733	-0.00018785	687.3464086567157	80.918	0.91848	81.663	81.112	82.03	0.74473					23	17	2	0	0	0	0.972	1	30670	30670		11.114	4.7604	1	2914400			38102	3438	27866	28098	37152	37152					-0.016940719453714337
PAAPAFGG	8	Unmodified	_PAAPAFGG_					0	0	0		nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	MULTI-SECPEP	A375_MHC_IP_R2	2	688.066162109375	1	687.346052	686.338775	-0.67513	-0.00046405	0.26532	0.00018237	-0.40981	-0.00028168	687.346132657618	75.809	3.0991	76.55	75.114	78.213	0.74052					98	60	2	0	0	0	0.972	1	28334	28334		0.79363	0	1	7688600			38103	3438	27866	28098	37153	37153					-0.016940719453714337
PAAPAFGG	8	Unmodified	_PAAPAFGG_					0	0	0		nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	MULTI-SECPEP	A375_MHC_IP_R2	2	687.74560546875	1	687.346052	686.338775	-0.58784	-0.00040405	0.48696	0.00033471	-0.10088	-6.9343E-05	687.3462858457711	89.237	1.5196	89.969	89.077	90.597	0.7318					50	29	2	0	0	0	0.972	1	33729	33729		0.79363	0	1	3426200			38104	3438	27866	28098	37154	37154					-0.016940719453714337
PAAPAFGG	8	Unmodified	_PAAPAFGG_					0	0	0		nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	MULTI-SECPEP	A375_MHC_IP_R2	2	686.7095336914062	1	687.346052	686.338775	-0.56559	-0.00038876	0.36637	0.00025182	-0.19923	-0.00013694	687.3461542260151	90.907	2.2349	91.641	90.445	92.68	0.7345					74	43	2	0	0	0	0.972	1	34406	34406		0	0	1	5286500			38105	3438	27866	28098	37155	37155					-0.016940719453714337
PAAPAFGG	8	Unmodified	_PAAPAFGG_					0	0	0		nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	MULTI-SECPEP	A375_MHC_IP_R2	2	686.7119750976562	1	687.346052	686.338775	-0.43015	-0.00029567	0.41066	0.00028226	-0.019497	-1.3401E-05	687.3462360057322	94.808	1.7232	95.553	94.312	96.035	0.74474					48	33	2	0	0	0	0.972	1	35685	35685		0	0	1	3625800			38106	3438	27866	28098	37156	37156					-0.016940719453714337
PAAPAFGG	8	Unmodified	_PAAPAFGG_					0	0	0		nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	MULTI-SECPEP	A375_MHC_IP_R2	2	687.7456665039062	1	687.346052	686.338775	-0.58349	-0.00040106	0.52237	0.00035905	-0.061117	-4.2008E-05	687.3463051450923	79.429	1.8758	80.173	79.236	81.112	0.74473					52	36	2	0	0	0	0.972	1	30316	30316		6.3541	0	1	6066300			38107	3438	27866	28098	37157	37157					-0.016940719453714337
PAAPAFGG	8	Unmodified	_PAAPAFGG_					0	0	0		nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	MULTI-MATCH	A375_MHC_IP_R1	1		1	687.346052	686.338775	-0.63887	-0.00043913	0.76713	0.00052728	0.12825	8.8155E-05	687.3465522499961	79.913	1.3765	79.913	79.316	80.693	0	-0.12998	8.3299E-05	NaN	6.3541	41	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5428500			38108	3438	27866	28098							-0.016940719453714337
PAAPAFGG	8	Unmodified	_PAAPAFGG_					0	0	0		nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	687.346052	686.338775	-0.65714	-0.00045168	0.96267	0.00066169	0.30553	0.00021	687.3465671304359	90.181	2.3347	90.181	88.307	90.641	0	0.10597	0.00016376	NaN	0.79363	76	45	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4042300			38109	3438	27866	28098							-0.016940719453714337
PAAPCRAQ	8	Unmodified	_PAAPCRAQ_					0	0	0			REV__ENST00000445714.1_1_10:27638689-27639127:-|nuORF	REV__ENST00000445714.1_1_10:27638689-27639127:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	813.0218505859375	1	813.403583	812.396307	-0.54906	-0.00044661	1.6877	0.0013727	1.1386	0.00092614	813.4066187083444	91.199	0.25206	91.199	91.098	91.35	0					5	4	2	0	0	0	0.972	1	33518	33518		2.5775	0	1	592180	+		38110	24847	27867	28099	37158	37158					-0.017395530114640678
PAAPKRGAMRR	11	Unmodified	_PAAPKRGAMRR_					0	0	0			REV__ENST00000406606.7_3_9:136627407-136627686:-|nuORF	REV__ENST00000406606.7_3_9:136627407-136627686:-|nuORF	MSMS	A375_MHC_IP_R2	2	605.7467651367188	2	605.851116	1209.68768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.54	1	130.75	130.25	131.25	0.2142								0	0	0	0.16249	1	51326	51326		5.7319	0.43497	1		+		38111	24446	27868	28100	37159	37159					0.09122185353476198
PAAPLLSV	8	Unmodified	_PAAPLLSV_					0	0	0			REV__nc|ENSG00000005379|O95153-2|TSPOAP1	REV__nc|ENSG00000005379|O95153-2|TSPOAP1	MSMS	A375_MHC_IP_R2	2	384.6175842285156	2	384.236722	766.45889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.582	1	95.327	94.827	95.827	0.74474								0	0	0	0.16876	1	35941	35941		2.5775	0	1		+		38112	16121	27869	28101	37160	37160					0.06631916328376519
PAAPPKPG	8	Unmodified	_PAAPPKPG_					0	0	0		ENSG00000173166|ENST00000319170|RAPH1	ENSG00000173166|ENST00000319170|RAPH1	ENSG00000173166|ENST00000319170|RAPH1	MULTI-SECPEP	A375_MHC_IP_R2	2	367.4964904785156	2	367.713414	733.412274	0.10197	3.7496E-05	0.60448	0.00022228	0.70645	0.00025977	367.7134885551559	65.183	0.50811	65.921	65.664	66.172	0.73812					13	9	2	0	0	0	0.972	1	24732	24732		0.69038	0	1	990320			38113	7773	27870	28102	37161	37161					0.03490476497097461
PAAQAWGPA	9	Unmodified	_PAAQAWGPA_					0	0	0		ENSG00000149634|ENST00000372519|SPATA25	ENSG00000149634|ENST00000372519|SPATA25	ENSG00000149634|ENST00000372519|SPATA25	MSMS	A375_MHC_IP_R1	1	434.7852783203125	2	434.719227	867.423902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.845	1	20.845	20.345	21.345	0								0	0	0	0.15486	1	5405	5405		5.2307	0	1				38114	5822	27871	28103	37162	37162					-0.015113264795786563
PAARRLPLRRR	11	Unmodified	_PAARRLPLRRR_					0	0	0		ENST00000321037.4_1_6:46097759-46107324:+|nuORF	ENST00000321037.4_1_6:46097759-46107324:+|nuORF	ENST00000321037.4_1_6:46097759-46107324:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	681.6273193359375	2	681.439278	1360.864	-0.11837	-8.0659E-05	4.4093	0.0030047	4.291	0.002924	681.4432097170022	113.75	0.20151	113.75	113.6	113.8	0					5	3	2	0	0	0	0.99881	1	41714	41714		0	0	1	2307200			38115	10696	27872	28104	37163	37163					0.1980056257891647
PAARSLNRDHQ	11	Unmodified	_PAARSLNRDHQ_					0	0	0			REV__ENSG00000100603|ENST00000261531|SNW1	REV__ENSG00000100603|ENST00000261531|SNW1	MULTI-SECPEP	A375_MHC_IP_R1	1	632.499755859375	2	632.828892	1263.64323	-0.81934	-0.0005185	-0.76545	-0.0004844	-1.5848	-0.0010029	632.8281912618726	19.374	0.25282	19.374	19.268	19.521	0					6	4	2	0	0	0	0.99109	1	4680	4680		1.3295	0	1	3222100	+		38116	17110	27873	28105	37164	37164					0.021954527409889124
PAASARLY	8	Unmodified	_PAASARLY_					0	0	0		ENST00000367498.7_1_1:185280415-185286453:-|nuORF	ENST00000367498.7_1_1:185280415-185286453:-|nuORF	ENST00000367498.7_1_1:185280415-185286453:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	848.8798828125	1	848.462478	847.455202	-0.013323	-1.1304E-05	0.3148	0.00026709	0.30147	0.00025579	848.463592288523	112.51	1.17	112.51	111.82	112.99	0					29	22	2	0	0	0	0.86765	1	41010	41010		24.674	13.034	1	8941500			38117	11092	27874	28106	37165	37165					0.02537246554527428
PAASFPNSIPN	11	Unmodified	_PAASFPNSIPN_					0	0	0			REV__nc|ENSG00000136715|Q9H0E3|SAP130	REV__nc|ENSG00000136715|Q9H0E3|SAP130	MULTI-SECPEP	A375_MHC_IP_R2	2	558.1216430664062	2	557.780013	1113.54547	-0.87772	-0.00048958	0.99356	0.00055419	0.11584	6.4613E-05	557.7803825709358	39.216	0.51093	39.991	39.708	40.219	0.77451					13	9	2	0	0	0	0.99227	1	14529	14529		1.1933	0.92432	1	1708500	+		38118	18953	27875	28107	37166	37166					-0.006757489077017453
PAASGADGDGW	11	Unmodified	_PAASGADGDGW_					0	0	0			REV__ENSG00000152270|ENST00000282096|PDE3B	REV__ENSG00000152270|ENST00000282096|PDE3B	MULTI-SECPEP	A375_MHC_IP_R2	2	1002.9985961914062	1	1003.41156	1002.40429	0.012867	1.2911E-05	-4.3632	-0.0043781	-4.3503	-0.0043652	1003.4086612974935	130.77	0.3056	130.98	130.86	131.16	0.2142					9	5	3	0	0	0	0.94285	1	51376	51376		19.257	5.7491	1	27154000	+		38119	19799	27876	28108	37167	37167					-0.09681747280990294
PAATELPNQ	9	Unmodified	_PAATELPNQ_					0	0	0		ENST00000473758.5_1_14:23537713-23537824:-|nuORF	ENST00000473758.5_1_14:23537713-23537824:-|nuORF	ENST00000473758.5_1_14:23537713-23537824:-|nuORF	MSMS	A375_MHC_IP_R2	2	470.6825256347656	2	470.740357	939.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.987	1	22.606	22.106	23.106	0.61932								0	0	0	0.15486	1	6959	6959		4.3292	0.38484	1				38120	12395	27877	28109	37168	37168					-0.005993958618546458
PAATPAPSPLW	11	Unmodified	_PAATPAPSPLW_					0	0	0			REV__ENSG00000174807|ENST00000311330|CD248	REV__ENSG00000174807|ENST00000311330|CD248	MULTI-SECPEP	A375_MHC_IP_R1	1	370.6135559082031	3	369.865958	1106.57605	0.25947	9.597E-05	1.8107	0.00066972	2.0702	0.00076569	370.2008629817541	46.45	0.19947	46.45	46.295	46.495	0					5	3	2	0	0	0	0.99526	1	16278	16278		0.094841	0	1	298550	+		38121	21303	27878	28110	37169	37169					0.027020294773365094
PACCCPECC	9	Unmodified	_PACCCPECC_					0	0	0			REV__ENSG00000221859|ENST00000380095|KRTAP10-10	REV__ENSG00000221859|ENST00000380095|KRTAP10-10	MULTI-SECPEP	A375_MHC_IP_R2	2	928.6466064453125	1	928.248998	927.241722	-0.22942	-0.00021296	-3.7337	-0.0034658	-3.9631	-0.0036788	928.2479083338353	104.24	0.20531	105	104.9	105.11	0.76308					5	3	2	0	0	0	0.8175	1	39470	39470		0.6015	0.6015	1	1276300	+		38122	22691	27879	28111	37170	37170					-0.22480952866521875
PADEPSITERY	11	Unmodified	_PADEPSITERY_					0	0	0			REV__CSTF2|p.G116R|1|0.41|ENSG00000101811|chrX:100823330-100823330|G/A|missense_variant	REV__CSTF2|p.G116R|1|0.41|ENSG00000101811|chrX:100823330-100823330|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	426.9383850097656	3	426.538458	1276.59355	-0.29047	-0.0001239	0.68074	0.00029036	0.39028	0.00016647	426.53846450798585	19.385	0.25282	19.385	19.268	19.521	0					9	4	3	0	0	0	0.99606	1	4851	4851		0.45452	0	1	3543300	+		38123	15929	27880	28112	37171	37171					-0.03368719778313789
PADGTRLF	8	Unmodified	_PADGTRLF_					0	0	0			REV__ENSG00000107611|ENST00000377833|CUBN	REV__ENSG00000107611|ENST00000377833|CUBN	MULTI-MSMS	A375_MHC_IP_R2	2	439.1322021484375	2	438.732335	875.450116	-0.78278	-0.00034343	0.24378	0.00010695	-0.539	-0.00023648	438.7323513302384	33.937	0.35364	34.689	34.5	34.853	0.75225					13	6	3	0	0	0	0.69583	1	12202	12202		36.044	12.024	1	4794400	+		38124	17491	27881	28113	37172	37172					0.007409426919025464
PADKDWEDIR	10	Unmodified	_PADKDWEDIR_					0	0	0		nc|ENSG00000155111|Q9BWU1-2|CDK19;ENSG00000155111|ENST00000368911|CDK19	nc|ENSG00000155111|Q9BWU1-2|CDK19	nc|ENSG00000155111|Q9BWU1-2|CDK19	MULTI-MSMS	A375_MHC_IP_R1	1	415.9246826171875	3	415.535048	1243.58332	-0.1784	-7.4133E-05	-0.69222	-0.00028764	-0.87062	-0.00036177	415.8692204926054	29.277	0.30504	29.277	29.098	29.403	0					7	5	2	0	0	0	0.70027	1	9103	9103		12.175	1.3752	1	1280600			38125	6129	27882	28114	37173	37173					-0.02873282712926084
PADVSIVTTL	10	Unmodified	_PADVSIVTTL_					0	0	0			REV__ENST00000506052.1_1_17:48539604-48540054:+|nuORF	REV__ENST00000506052.1_1_17:48539604-48540054:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	508.71783447265625	2	508.28714	1014.55973	-0.4062	-0.00020647	4.0673	0.0020674	3.6611	0.0018609	508.28853724823125	87.873	0.20253	87.873	87.696	87.898	0					5	3	2	0	0	0	0.65982	1	32237	32237		26.884	7.4447	1	484520	+		38126	25546	27883	28115	37174	37174					0.053029035205895525
PAEDDSRDSQ	10	Unmodified	_PAEDDSRDSQ_					0	0	0		nc|ENSG00000050405|Q9UHB6-3|LIMA1;LIMA1|p.A544Dfs*11|1|0.27|ENSG00000050405|chr12:50177700-50177713|CCCTTCCTCCAAGG/-|frameshift_variant;nc|ENSG00000050405|Q9UHB6-2|LIMA1;ENSG00000050405|ENST00000341247|LIMA1	nc|ENSG00000050405|Q9UHB6-3|LIMA1	nc|ENSG00000050405|Q9UHB6-3|LIMA1	MSMS	A375_MHC_IP_R2	2	560.2282104492188	2	560.231081	1118.44761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.064	1	82.807	82.307	83.307	0.74293								0	0	0	0.15435	1	31172	31172		6.7232	2.7788	1				38127	1230	27884	28116	37175	37175					-0.10687602294365206
PAEDRGKPSPS	11	Unmodified	_PAEDRGKPSPS_					0	0	0			REV__ENSG00000133246|ENST00000423345|PRAM1	REV__ENSG00000133246|ENST00000423345|PRAM1	MULTI-SECPEP	A375_MHC_IP_R1	1	380.2680969238281	3	380.859643	1139.5571	0.3303	0.0001258	-0.23352	-8.894E-05	0.096778	3.6859E-05	380.85993976104106	28.387	0.80791	28.387	27.937	28.745	0					19	15	2	0	0	0	0.92455	1	8906	8906		12.856	1.7907	1	1494900	+		38128	18713	27885	28117	37176	37176					-0.007095518843470927
PAEDSEDEV	9	Unmodified	_PAEDSEDEV_					0	0	0		ENSG00000171148|ENST00000301964|TADA3;nc|ENSG00000171148|O75528-2|TADA3;ENST00000492103.1_1_3:9822043-9829075:-|nuORF	ENSG00000171148|ENST00000301964|TADA3	ENSG00000171148|ENST00000301964|TADA3	MSMS	A375_MHC_IP_R2	2	495.7230224609375	2	495.698551	989.38255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.193	1	83.933	83.433	84.433	0.73962								0	0	0	0.15486	1	31619	31619		5.2307	2.3415	1				38129	7577	27886	28118	37177	37177					-0.11256596820214781
PAEELNYTV	9	Unmodified	_PAEELNYTV_					0	0	0		nc|ENSG00000112499|O15244-3|SLC22A2;nc|ENSG00000112499|O15244-2|SLC22A2;ENSG00000112499|ENST00000366953|SLC22A2;nc|ENSG00000175003|O15245-4|SLC22A1;nc|ENSG00000175003|O15245-3|SLC22A1;nc|ENSG00000175003|O15245-2|SLC22A1;ENSG00000175003|ENST00000366963|SLC22A1	nc|ENSG00000112499|O15244-3|SLC22A2;nc|ENSG00000175003|O15245-4|SLC22A1	nc|ENSG00000112499|O15244-3|SLC22A2	MULTI-MSMS	A375_MHC_IP_R2	2	518.2034301757812	2	518.253297	1034.49204	-0.55307	-0.00028663	0.032197	1.6686E-05	-0.52087	-0.00026994	518.2532220426511	86.183	1.6282	86.916	86.338	87.966	0.733					76	31	4	0	0	0	0.68216	1	33038	33038		8.5933	0	1	49689000			38130	3091;7923	27887	28119	37178	37178					-0.023825464102628757
PAEGAIPLPV	10	Unmodified	_PAEGAIPLPV_					0	0	0		nc|ENSG00000186868|P10636|MAPT;nc|ENSG00000186868|P10636-9|MAPT;ENSG00000186868|ENST00000262410|MAPT	nc|ENSG00000186868|P10636|MAPT	nc|ENSG00000186868|P10636|MAPT	MULTI-SECPEP	A375_MHC_IP_R1	1	482.13226318359375	2	482.279118	962.543683	-0.21934	-0.00010578	0.31646	0.00015262	0.097121	4.6839E-05	482.27930190914924	70.367	0.97141	70.367	70.034	71.005	0					21	18	2	0	0	0	0.83086	1	25673	25673		3.5965	0	1	1424700			38131	8786	27888	28120	37179	37179					0.06091242074319325
PAENKPRKR	9	Unmodified	_PAENKPRKR_					0	0	0		ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	MSMS	A375_MHC_IP_R2	2	365.9371337890625	3	365.884235	1094.63087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.394	1	28.073	27.573	28.573	0.67857								0	0	0	0.15486	1	9353	9353		10.151	3.5202	1				38132	2238	27889	28121	37180	37180					0.08734461068593191
PAEPAREL	8	Unmodified	_PAEPAREL_					0	0	0			REV__ENST00000598607.1_3_19:6393018-6393985:-|nuORF	REV__ENST00000598607.1_3_19:6393018-6393985:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	442.1377258300781	2	441.737617	881.460681	0.031373	1.3859E-05	0.16175	7.145E-05	0.19312	8.5308E-05	441.73763314340454	56.372	0.60857	56.372	56.041	56.65	0					29	11	3	0	0	0	0.67331	1	20159	20159		41.84	3.6884	1	9694400	+		38133	26488	27890	28122	37181	37181					0.015209253463240202
PAEPAREL	8	Unmodified	_PAEPAREL_					0	0	0			REV__ENST00000598607.1_3_19:6393018-6393985:-|nuORF	REV__ENST00000598607.1_3_19:6393018-6393985:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	441.737617	881.460681	0.031373	1.3859E-05	0.16175	7.145E-05	0.19312	8.5308E-05	441.73763314340454	56.372	0.60857	56.372	56.041	56.65	0	0.006919	8.7E-05	NaN	41.84	29	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9694400	+		38134	26488	27890	28122							0.015209253463240202
PAFAEEYLY	9	Unmodified	_PAFAEEYLY_					0	0	0		ENSG00000153395|ENST00000283415|LPCAT1;ENST00000503252.1_1_5:1463768-1467406:-|nuORF	ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	MSMS	A375_MHC_IP_R1	1	551.7137451171875	2	551.758215	1101.50188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.342	1	90.342	89.842	90.842	0								0	0	0	0.15486	1	33200	33200		13.508	0.46542	1				38135	6030	27891	28123	37182	37182					-0.04481358404859748
PAFWSEEVPGM	11	Unmodified	_PAFWSEEVPGM_					0	0	0			REV__nc|ENSG00000137275|Q13546-2|RIPK1	REV__nc|ENSG00000137275|Q13546-2|RIPK1	MSMS	A375_MHC_IP_R1	1	625.39599609375	2	625.281531	1248.54851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.54	1	112.54	112.04	113.04	0								0	0	0	0.16249	1	41246	41246		5.7319	0	1		+		38136	18997	27892	28124	37183	37183					-0.06582241845239878
PAGALSLGQL	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))PAGALSLGQL_					1	0	0			REV__ENSG00000122122|ENST00000356892|SASH3	REV__ENSG00000122122|ENST00000356892|SASH3	MULTI-SECPEP	A375_MHC_IP_R1	1	485.17431640625	2	484.7742	967.533846	-0.070378	-3.4117E-05	0.27875	0.00013513	0.20837	0.00010101	484.7741685854119	72.007	1.4643	72.007	71.516	72.98	0					68	28	3	0	0	0	0.16517	1	26320	26320		71.134	21.201	1	24256000	+		38137	18188	27893	28125	37184	37184					0.048780540689335794
PAGALSLGQL	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))PAGALSLGQL_					1	0	0			REV__ENSG00000122122|ENST00000356892|SASH3	REV__ENSG00000122122|ENST00000356892|SASH3	MULTI-SECPEP	A375_MHC_IP_R2	2	485.1226806640625	2	484.7742	967.533846	-0.84124	-0.00040781	0.16838	8.1624E-05	-0.67286	-0.00032619	484.7742211869128	71.298	1.2155	72.032	71.706	72.921	0.73421					67	23	4	0	0	0	0.16517	1	27190	27190		61.357	13.609	1	25760000	+		38138	18188	27893	28125	37185	37185					0.048780540689335794
PAGAVAVPAI	10	Unmodified	_PAGAVAVPAI_					0	0	0			REV__ENSG00000105866|ENST00000222584|SP4	REV__ENSG00000105866|ENST00000222584|SP4	MULTI-MSMS	A375_MHC_IP_R1	1	433.66070556640625	2	433.260728	864.506903	-0.22142	-9.5931E-05	0.091788	3.9768E-05	-0.12963	-5.6163E-05	433.2607102382419	83.544	0.66	83.544	83.277	83.937	0					18	12	2	0	0	0	0.19587	1	30608	30608		49.669	5.2619	1	1479300	+		38139	17414	27894	28126	37186	37186					0.06922990248415317
PAGCCCCC	8	Unmodified	_PAGCCCCC_					0	0	0		ENSG00000143643|ENST00000366661|TTC13;nc|ENSG00000143643|Q8NBP0-2|TTC13	ENSG00000143643|ENST00000366661|TTC13	ENSG00000143643|ENST00000366661|TTC13	MULTI-SECPEP	A375_MHC_IP_R1	1	759.0692138671875	1	759.175105	758.167828	-0.71064	-0.0005395	-0.82839	-0.00062889	-1.539	-0.0011684	759.1748792717556	120.38	0.20158	120.38	120.25	120.45	0					5	3	2	0	0	0	0.972	1	44571	44571		0.79363	0.79363	1	7369300			38140	5421	27895	28127	37187	37187					-0.22092876238195913
PAGDPDFH	8	Unmodified	_PAGDPDFH_					0	0	0			REV__nc|ENSG00000181409|Q6ZMQ8-3|AATK	REV__nc|ENSG00000181409|Q6ZMQ8-3|AATK	MSMS	A375_MHC_IP_R1	1	428.1584777832031	2	428.185217	854.355882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.787	1	37.787	37.287	38.287	0								0	0	0	0.16876	1	12763	12763		6.3541	0	1		+		38141	21648	27896	28128	37188	37188					-0.0771219613023959
PAGGGGRG	8	Unmodified	_PAGGGGRG_					0	0	0		ENST00000441740.6_2_19:47920605-47922558:-|nuORF	ENST00000441740.6_2_19:47920605-47922558:-|nuORF	ENST00000441740.6_2_19:47920605-47922558:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	628.5155029296875	1	628.316148	627.308872	-0.71357	-0.00044835	-0.97298	-0.00061134	-1.6866	-0.0010597	628.3146341475692	90.124	0.35419	90.124	89.83	90.184	0					9	6	2	0	0	0	0.972	1	33069	33069		0.79363	0	1	2334600			38142	11985	27897	28129	37189	37189					-0.019690108907184367
PAGGSGALP	9	Unmodified	_PAGGSGALP_					0	0	0		ENSG00000063515|ENST00000086933|GSC2	ENSG00000063515|ENST00000086933|GSC2	ENSG00000063515|ENST00000086933|GSC2	MULTI-MSMS	A375_MHC_IP_R1	1	727.3768920898438	1	726.37808	725.370804	-0.12363	-8.9805E-05	-2.9865	-0.0021693	-3.1101	-0.0022591	726.3723565055939	115	0.20002	115	114.87	115.07	0					5	3	2	0	0	0	0.72507	1	42180	42180		4.756	0	1	947250			38143	1342	27898	28130	37190	37190					-0.0028670426224834955
PAGISYRQF	9	Unmodified	_PAGISYRQF_					0	0	0		ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;ENST00000428632.7_1_12:113682520-113726187:+|nuORF;ENST00000552077.5_1_12:113664633-113726187:+|nuORF	ENSG00000186815|ENST00000335509|TPCN1	ENSG00000186815|ENST00000335509|TPCN1	MULTI-SECPEP	A375_MHC_IP_R1	1	520.1542358398438	2	519.771991	1037.52943	-0.48037	-0.00024968	1.1513	0.00059842	0.67095	0.00034874	519.7722891484455	79.6	0.36094	79.6	79.367	79.728	0					9	6	2	0	0	0	0.28418	1	29065	29065		30.225	3.3412	1	737130			38144	8779	27899	28131	37191	37191					0.012165896460373915
PAGKKSGF	8	Unmodified	_PAGKKSGF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	A375_MHC_IP_R2	2	396.2763977050781	2	396.224146	790.433738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.721	1	33.458	32.958	33.958	0.73692								0	0	0	0.16876	1	11672	11672		13.508	4.1604	1				38145	6151;14694	27900	28132	37192	37192					0.030138615258124446
PAGPGAAG	8	Unmodified	_PAGPGAAG_					0	0	0		nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENSG00000139641|ENST00000394048|ESYT1;ESYT1|p.G40S|1|0.37|ENSG00000139641|chr12:56128437-56128437|G/A|missense_variant	nc|ENSG00000139641|Q9BSJ8-2|ESYT1	nc|ENSG00000139641|Q9BSJ8-2|ESYT1	MULTI-SECPEP	A375_MHC_IP_R1	1	597.3926391601562	1	597.299101	596.291825	-0.34262	-0.00020465	1.2895	0.00077023	0.9469	0.00056558	597.3007436472863	70.732	0.51001	70.732	70.392	70.902	0					10	9	2	0	0	0	0.972	1	25594	25594		0	0	1	1030600			38146	5098	27901	28133	37193	37193					-0.022469314965178455
PAGPPLDA	8	Unmodified	_PAGPPLDA_					0	0	0			REV__ENSG00000186806|ENST00000335624|VSIG10L	REV__ENSG00000186806|ENST00000335624|VSIG10L	MULTI-SECPEP	A375_MHC_IP_R1	1	737.736083984375	1	737.382831	736.375555	-0.49345	-0.00036386	-1.9322	-0.0014247	-2.4256	-0.0017886	737.3841476539421	102.68	0.20184	102.68	102.56	102.76	0					5	3	2	0	0	0	0.972	1	37694	37694		5.7604	0	1	578230	+		38147	21987	27902	28134	37194	37194					-0.003178201194941721
PAGQRPAW	8	Unmodified	_PAGQRPAW_					0	0	0			REV__ENST00000480290.5_1_7:127991288-127999229:-|nuORF	REV__ENST00000480290.5_1_7:127991288-127999229:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	441.1662292480469	2	441.732669	881.450785	0.087137	3.8491E-05	-0.2682	-0.00011847	-0.18107	-7.9983E-05	441.73253228413313	37.356	0.51051	37.356	37.096	37.607	0					23	9	4	0	0	0	0.73517	1	12628	12628		42.968	42.968	1	9549700	+		38148	25245	27903	28135	37195	37195					0.005317821316111804
PAGRGRPP	8	Unmodified	_PAGRGRPP_					0	0	0			REV__nc|ENSG00000125944|O43390-3|HNRNPR	REV__nc|ENSG00000125944|O43390-3|HNRNPR	MULTI-SECPEP	A375_MHC_IP_R1	1	807.8253784179688	1	807.458396	806.45112	-0.18686	-0.00015088	-0.42246	-0.00034112	-0.60933	-0.00049201	807.457920549437	111.67	0.661	111.67	111.52	112.18	0					16	12	2	0	0	0	0.972	1	41022	41022		0.79363	0	1	1543500	+		38149	18374	27904	28136	37196	37196					0.04015201851461825
PAGRPYRRF	9	Unmodified	_PAGRPYRRF_					0	0	0			REV__ENST00000476333.1_1_6:33280961-33281729:-|nuORF	REV__ENST00000476333.1_1_6:33280961-33281729:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	560.8950805664062	2	560.312149	1118.60975	-0.64108	-0.0003592	3.9002	0.0021853	3.2591	0.0018261	560.816505569016	90.217	0.45583	90.217	90.032	90.488	0					13	8	2	0	0	0	0.69504	1	33233	33233		7.9102	3.9658	1	2968800	+		38150	22743	27905	28137	37197	37197					0.05518495759747566
PAGRSRGK	8	Unmodified	_PAGRSRGK_					0	0	0		ENST00000339142.6_2_17:77020430-77030438:+|nuORF	ENST00000339142.6_2_17:77020430-77030438:+|nuORF	ENST00000339142.6_2_17:77020430-77030438:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	829.1968994140625	1	828.47986	827.472583	-0.32649	-0.00027049	0.21924	0.00018163	-0.10725	-8.8855E-05	828.4799753303399	100.91	1.5695	100.91	100.13	101.7	0					51	30	2	0	0	0	0.972	1	36865	36865		0	0	1	7522100			38151	10842	27906	28138	37198	37198					0.051945868801908546
PAGVILTQ	8	Unmodified	_PAGVILTQ_					0	0	0		ENST00000578660.1_1_17:46124592-46124850:-|nuORF	ENST00000578660.1_1_17:46124592-46124850:-|nuORF	ENST00000578660.1_1_17:46124592-46124850:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	797.9500122070312	1	798.47198	797.464704	-0.30522	-0.00024371	-0.83059	-0.0006632	-1.1358	-0.00090691	798.471240248867	93.304	1.4214	93.304	92.769	94.191	0					31	27	2	0	0	0	0.972	1	34599	34599		0.69038	0.69038	1	3180000			38152	13657	27907	28139	37199	37199					0.05787014840052507
PAHTGMMGV	9	Unmodified	_PAHTGMMGV_					0	0	0		nc|ENSG00000108001|Q9H4W6-2|EBF3;nc|ENSG00000108001|Q9H4W6|EBF3;ENSG00000108001|ENST00000440978|EBF3	nc|ENSG00000108001|Q9H4W6-2|EBF3	nc|ENSG00000108001|Q9H4W6-2|EBF3	MULTI-SECPEP	A375_MHC_IP_R1	1	450.119384765625	2	450.706948	899.399343	-0.15456	-6.9662E-05	1.05	0.00047326	0.89547	0.0004036	450.70740376122546	74.743	0.55898	74.743	74.451	75.009	0					17	10	2	0	0	0	0.60012	1	27211	27211		18.135	5.6034	1	1097100			38153	2776	27908	28140	37200	37200					-0.05438045948949366
PAHTGMMGV	9	Unmodified	_PAHTGMMGV_					0	0	0		nc|ENSG00000108001|Q9H4W6-2|EBF3;nc|ENSG00000108001|Q9H4W6|EBF3;ENSG00000108001|ENST00000440978|EBF3	nc|ENSG00000108001|Q9H4W6-2|EBF3	nc|ENSG00000108001|Q9H4W6-2|EBF3	MULTI-MSMS	A375_MHC_IP_R2	2	450.6327819824219	2	450.706948	899.399343	-0.27169	-0.00012245	1.5433	0.00069556	1.2716	0.00057311	450.7074618908503	73.79	0.55974	74.525	74.396	74.956	0.73541					17	10	2	0	0	0	0.50735	1	28027	28027		19.439	1.304	1	1039100			38154	2776	27908	28140	37201	37201					-0.05438045948949366
PAHTGMMGV	9	Unmodified	_PAHTGMMGV_					0	0	0		nc|ENSG00000108001|Q9H4W6-2|EBF3;nc|ENSG00000108001|Q9H4W6|EBF3;ENSG00000108001|ENST00000440978|EBF3	nc|ENSG00000108001|Q9H4W6-2|EBF3	nc|ENSG00000108001|Q9H4W6-2|EBF3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	450.706948	899.399343	-0.27169	-0.00012245	1.5433	0.00069556	1.2716	0.00057311	450.7074618908503	73.79	0.55974	74.525	74.396	74.956	0.73541	-0.10913	0.00031109	NaN	19.439	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1039100			38155	2776	27908	28140							-0.05438045948949366
PAIAVPLLEM	10	Unmodified	_PAIAVPLLEM_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.R3751Gfs*17|1|0.29|ENSG00000103657|chr15:63643484-63643484|G/-|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	A375_MHC_IP_R1	1	527.7045288085938	2	527.304278	1052.594	-0.75348	-0.00039732	1.3048	0.00068803	0.55132	0.00029072	527.3049564113969	132.77	0.56197	132.77	132.59	133.15	0					15	10	2	0	0	0	0.71245	1	51197	51197		6.7232	6.7232	1	4888300			38156	2464	27909	28141	37202	37202					0.06981028407835765
PAIHWSSL	8	Unmodified	_PAIHWSSL_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-SECPEP	A375_MHC_IP_R2	2	456.14208984375	2	455.742702	909.470852	-0.53273	-0.00024279	-0.24625	-0.00011223	-0.77898	-0.00035501	455.7426060820073	61.738	0.50301	62.482	62.17	62.673	0.74334					16	9	2	0	0	0	0.96296	1	23430	23430		10.183	10.183	1	1660300	+		38157	19379	27910	28142	37203	37203					0.012495330715751152
PAIIFVTKRN	10	Unmodified	_PAIIFVTKRN_					0	0	0		ENSG00000275152|ENST00000611905|CCL16	ENSG00000275152|ENST00000611905|CCL16	ENSG00000275152|ENST00000611905|CCL16	MULTI-MSMS	A375_MHC_IP_R2	2	387.3045349121094	3	386.904636	1157.69208	-0.085623	-3.3128E-05	0.093388	3.6132E-05	0.0077651	3.0043E-06	386.90479280496834	70.272	0.76001	71.006	70.642	71.402	0.73421					27	14	3	0	0	0	0.70741	1	26657	26657		8.9762	0.22446	1	1507400			38158	10009	27911	28143	37204	37204					0.11953973048048283
PAIIFVTKRN	10	Unmodified	_PAIIFVTKRN_					0	0	0		ENSG00000275152|ENST00000611905|CCL16	ENSG00000275152|ENST00000611905|CCL16	ENSG00000275152|ENST00000611905|CCL16	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	386.904636	1157.69208	-0.085623	-3.3128E-05	0.093388	3.6132E-05	0.0077651	3.0043E-06	386.90479280496834	70.272	0.76001	71.006	70.642	71.402	0.73421	-0.073296	0.00015642	NaN	8.9762	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1507400			38159	10009	27911	28143							0.11953973048048283
PAIKKVTPKRP	11	Unmodified	_PAIKKVTPKRP_					0	0	0			REV__ENSG00000011007|ENST00000613537|ELOA	REV__ENSG00000011007|ENST00000613537|ELOA	MULTI-SECPEP	A375_MHC_IP_R2	2	618.3182983398438	2	617.90334	1233.79213	-0.5762	-0.00035604	1.9647	0.001214	1.3885	0.00085797	617.9034858346565	89.787	0.15434	90.519	90.391	90.545	0.7318					4	2	2	0	0	0	0.99881	1	34154	34154		0.35063	0	1	603530	+		38160	16200	27912	28144	37205	37205					0.18458210381845674
PAIKTLRIF	9	Unmodified	_PAIKTLRIF_					0	0	0			REV__AFM|p.L432F|1|0.23|ENSG00000079557|chr4:73499118-73499118|C/T|missense_variant	REV__AFM|p.L432F|1|0.23|ENSG00000079557|chr4:73499118-73499118|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	353.9623107910156	3	353.56221	1057.6648	0.25499	9.0155E-05	-0.16979	-6.0032E-05	0.085198	3.0123E-05	353.56214883011364	69.14	0.60829	69.14	68.819	69.427	0					20	11	2	0	0	0	0.73141	1	25073	25073		4.1895	0	1	2549400	+		38161	15342	27913	28145	37206	37206					0.13827489507639257
PAIKTLRIF	9	Unmodified	_PAIKTLRIF_					0	0	0			REV__AFM|p.L432F|1|0.23|ENSG00000079557|chr4:73499118-73499118|C/T|missense_variant	REV__AFM|p.L432F|1|0.23|ENSG00000079557|chr4:73499118-73499118|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	353.56221	1057.6648	0.25499	9.0155E-05	-0.16979	-6.0032E-05	0.085198	3.0123E-05	353.56214883011364	69.14	0.60829	69.14	68.819	69.427	0	0	0	NaN	4.1895	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2549400	+		38162	15342	27913	28145							0.13827489507639257
PAIVAPDAF	9	Unmodified	_PAIVAPDAF_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MSMS	A375_MHC_IP_R2	2	450.6582336425781	2	450.744911	899.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.309	1	48.07	47.57	48.57	0.76128								0	0	0	0.15131	1	17735	17735		19.439	0	1				38163	5172	27914	28146	37207	37207					0.0215099749447063
PAKAQIHG	8	Unmodified	_PAKAQIHG_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MSMS	A375_MHC_IP_R1	1	411.1473083496094	2	411.235045	820.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.56	1	131.56	131.06	132.06	0								0	0	0	0.16876	1	50723	50723		8.5933	0	1				38164	5332	27915	28147	37208	37208					0.038126662743820816
PAKEERGRGL	10	Unmodified	_PAKEERGRGL_					0	0	0			REV__ENST00000377494.5_1_11:64510647-64510827:-|nuORF	REV__ENST00000377494.5_1_11:64510647-64510827:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	370.9413146972656	3	371.543878	1111.60981	0.16092	5.9789E-05	3.9694	0.0014748	4.1303	0.0015346	371.54484930432835	18.855	0.20984	19.458	19.423	19.633	0.60308					7	5	2	0	0	0	0.92227	1	5712	5712		7.9454	3.7559	1	17996000	+		38165	24159	27916	28148	37209	37209					0.05846450969079342
PAKILWKRP	9	Unmodified	_PAKILWKRP_					0	0	0		ENST00000549311.7_1_12:53443879-53456445:+|nuORF	ENST00000549311.7_1_12:53443879-53456445:+|nuORF	ENST00000549311.7_1_12:53443879-53456445:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	370.9330749511719	3	370.237838	1107.69168	0.21445	7.9397E-05	0.22568	8.3555E-05	0.44013	0.00016295	370.23786287732537	44.974	0.45924	45.743	45.492	45.951	0.7691					9	8	2	0	0	0	0.81645	1	16845	16845		0.26902	0	1	770850			38166	13358	27917	28149	37210	37210					0.14214598118837785
PAKLLNSSCSL	11	Unmodified	_PAKLLNSSCSL_					0	0	0		ENSG00000179213|ENST00000601727|SIGLECL1	ENSG00000179213|ENST00000601727|SIGLECL1	ENSG00000179213|ENST00000601727|SIGLECL1	MULTI-SECPEP	A375_MHC_IP_R1	1	377.6275329589844	3	378.205875	1131.59579	0.021212	8.0224E-06	-0.85176	-0.00032214	-0.83055	-0.00031412	378.2059377470945	26.72	0.2522	26.72	26.626	26.878	0					5	4	2	0	0	0	0.9754	1	8052	8052		9.7643	0	1	748260			38167	8213	27918	28150	37211	37211					0.03526037425785944
PAKMWMSV	8	Unmodified	_PAKMWMSV_					0	0	0		ENST00000598717.5_1_19:41105868-41118026:+|nuORF;ENST00000204005.13_1_19:41114149-41118026:+|nuORF	ENST00000598717.5_1_19:41105868-41118026:+|nuORF	ENST00000598717.5_1_19:41105868-41118026:+|nuORF	MSMS	A375_MHC_IP_R2	2	474.86376953125	2	475.235341	948.45613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.666	1	80.411	79.911	80.911	0.74474								0	0	0	0.16876	1	30234	30234		9.3474	1.4373	1				38168	10077	27919	28151	37212	37212					-0.020159983924372682
PAKQMWKDTDP	11	Unmodified	_PAKQMWKDTDP_					0	0	0			REV__ENSG00000198642|ENST00000359039|KLHL9	REV__ENSG00000198642|ENST00000359039|KLHL9	MULTI-SECPEP	A375_MHC_IP_R2	2	439.6137390136719	3	439.5483	1315.62307	-0.58718	-0.00025809	0.80322	0.00035305	0.21604	9.496E-05	439.54915795331664	19.038	0.28076	19.641	19.452	19.733	0.60308					7	5	2	0	0	0	0.99606	1	5821	5821		2.8433	1.5136	1	2150900	+		38169	22390	27920	28152	37213	37213					-0.02211479033849173
PAKRSAHG	8	Unmodified	_PAKRSAHG_					0	0	0		ENSG00000174672|ENST00000528841|BRSK2;nc|ENSG00000174672|Q8IWQ3-5|BRSK2	ENSG00000174672|ENST00000528841|BRSK2	ENSG00000174672|ENST00000528841|BRSK2	MULTI-SECPEP	A375_MHC_IP_R2	2	823.817138671875	1	823.453311	822.446034	-0.76578	-0.00063059	0.25669	0.00021137	-0.50909	-0.00041921	823.4533289103038	103.87	2.7957	104.63	103.43	106.23	0.76428					88	54	2	0	0	0	0.94479	1	39611	39611		13.508	0	1	4801800			38170	7895	27921	28153	37214	37214					0.02770897988852994
PAKSVIIPKL	10	Unmodified	_PAKSVIIPKL_					0	0	0		ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	MULTI-MSMS	A375_MHC_IP_R1	1	356.9653015136719	3	355.905865	1064.69577	-0.37182	-0.00013233	1.0481	0.00037304	0.67631	0.0002407	355.9047957734494	29.683	1.5557	29.683	29.403	30.959	0					82	30	4	0	0	0	0.70312	1	9364	9364		10.899	3.7972	1	25477000			38171	8292	27922	28154	37215	37215					0.16600642821890688
PAKVKVSK	8	Unmodified	_PAKVKVSK_					0	0	0		EXOSC5|p.E63K|1|0.16|ENSG00000077348|chr19:41392942-41392942|C/T|missense_variant	EXOSC5|p.E63K|1|0.16|ENSG00000077348|chr19:41392942-41392942|C/T|missense_variant	EXOSC5|p.E63K|1|0.16|ENSG00000077348|chr19:41392942-41392942|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	857.2967529296875	1	856.561464	855.554188	-0.56222	-0.00048158	0.12076	0.00010344	-0.44146	-0.00037814	856.5613881560239	89.111	0.39962	89.843	89.685	90.085	0.7318					12	7	2	0	0	0	0.77781	1	33986	33986		2.8892	0	1	2222900			38172	13963	27923	28155	37216	37216					0.12063269519421738
PALAQRTR	8	Unmodified	_PALAQRTR_					0	0	0		ENST00000476284.1_1_22:50964673-50968379:-|nuORF	ENST00000476284.1_1_22:50964673-50968379:-|nuORF	ENST00000476284.1_1_22:50964673-50968379:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	457.1721496582031	2	456.772326	911.530098	0.14085	6.4337E-05	-0.061239	-2.7972E-05	0.079613	3.6365E-05	456.77218717628267	126.6	1.2147	126.6	126.41	127.62	0					51	23	4	0	0	0	0.77717	1	48341	48341		5.2307	0	1	59352000			38173	12431	27924	28156	37217	37217					0.07079429085740685
PALDDCLDVR	10	Unmodified	_PALDDCLDVR_					0	0	0			REV__ENSG00000248920|ENST00000515566|USP17L19	REV__ENSG00000248920|ENST00000515566|USP17L19	MULTI-SECPEP	A375_MHC_IP_R1	1	559.145263671875	2	558.771331	1115.52811	-0.66756	-0.00037301	-1.2665	-0.00070766	-1.934	-0.0010807	558.7696741547743	52.872	0.55831	52.872	52.49	53.048	0					17	10	2	0	0	0	0.87163	1	18693	18693		9.3831	7.9012	1	1780300	+		38174	22731	27925	28157	37218	37218					-0.025034125050297007
PALDDCLDVR	10	Unmodified	_PALDDCLDVR_					0	0	0			REV__ENSG00000248920|ENST00000515566|USP17L19	REV__ENSG00000248920|ENST00000515566|USP17L19	MULTI-MATCH	A375_MHC_IP_R2	2		2	558.771331	1115.52811	-1.0814	-0.00060424	-3.112	-0.0017389	-4.1934	-0.0023431	558.7691366812678	52.257	0.35481	53.009	52.729	53.083	0.75225	0.068715	-0.0010863	NaN	9.3831	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1267700	+		38175	22731	27925	28157							-0.025034125050297007
PALFSRTSI	9	Unmodified	_PALFSRTSI_					0	0	0		PCDHGB1|p.S429F|1|0.17|ENSG00000254221|chr5:141351546-141351546|C/T|missense_variant	PCDHGB1|p.S429F|1|0.17|ENSG00000254221|chr5:141351546-141351546|C/T|missense_variant	PCDHGB1|p.S429F|1|0.17|ENSG00000254221|chr5:141351546-141351546|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	495.5724182128906	2	496.282192	990.549831	-0.35749	-0.00017742	-0.49564	-0.00024598	-0.85313	-0.00042339	496.2818578353785	87.156	0.25452	87.889	87.762	88.017	0.733					7	4	2	0	0	0	0.71541	1	33097	33097		16.942	1.0951	1	788210			38176	15140	27926	28158	37219	37219					0.054177603058633395
PALFVEHLE	9	Unmodified	_PALFVEHLE_					0	0	0			REV__ENST00000371666.7_1_X:117883651-117883723:+|nuORF	REV__ENST00000371666.7_1_X:117883651-117883723:+|nuORF	MSMS	A375_MHC_IP_R1	1	527.7362670898438	2	527.782025	1053.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.549	1	29.549	29.049	30.049	0								0	0	0	0.15486	1	9276	9276		12.532	0.89125	1		+		38177	24047	27927	28159	37220	37220					0.024863405860060084
PALGKTQF	8	Unmodified	_PALGKTQF_					0	0	0			REV__ENSG00000092445|ENST00000263798|TYRO3	REV__ENSG00000092445|ENST00000263798|TYRO3	MSMS	A375_MHC_IP_R1	1	431.2879638671875	2	431.245078	860.475603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.43	1	143.43	142.93	143.93	0								0	0	0	0.16876	1	55023	55023		0.79363	0	1		+		38178	16972	27928	28160	37221	37221					0.039784172143299656
PALHTPLL	8	Unmodified	_PALHTPLL_					0	0	0			REV__ENST00000455503.1_1_1:151319554-151319629:+|nuORF	REV__ENST00000455503.1_1_1:151319554-151319629:+|nuORF	MSMS	A375_MHC_IP_R2	2	431.2882385253906	2	431.263271	860.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.981	1	88.713	88.213	89.213	0.7318								0	0	0	0.16876	1	33474	33474		8.5933	2.8329	1		+		38179	24928	27929	28161	37222	37222					0.07615294111042203
PALKDRKW	8	Unmodified	_PALKDRKW_					0	0	0		nc|ENSG00000120805|P40616-2|ARL1;ENSG00000120805|ENST00000261636|ARL1	nc|ENSG00000120805|P40616-2|ARL1	nc|ENSG00000120805|P40616-2|ARL1	MSMS	A375_MHC_IP_R2	2	507.376953125	2	507.298176	1012.5818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.882	1	80.627	80.127	81.127	0.74474								0	0	0	0.16876	1	30323	30323		6.3541	0.14832	1				38180	3689	27930	28162	37223	37223					0.07601172779652643
PALKNRCHIRY	11	Unmodified	_PALKNRCHIRY_					0	0	0		ENSG00000122756|ENST00000378980|CNTFR	ENSG00000122756|ENST00000378980|CNTFR	ENSG00000122756|ENST00000378980|CNTFR	MSMS	A375_MHC_IP_R2	2	457.65264892578125	3	457.587312	1369.74011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.412	1	24.042	23.542	24.542	0.63014								0	0	0	0.16269	1	7526	7526		4.7159	0.59929	1				38181	3807	27931	28163	37224	37224					0.07002723696427893
PALKNREKF	9	Unmodified	_PALKNREKF_					0	0	0			REV__ENST00000556198.1_3_12:25348525-25356891:+|nuORF	REV__ENST00000556198.1_3_12:25348525-25356891:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	551.6691284179688	2	551.822015	1101.62948	-0.91759	-0.00050634	-0.32574	-0.00017975	-1.2433	-0.00068609	551.8214917996622	44.799	0.3583	45.569	45.34	45.698	0.7691					9	6	2	0	0	0	0.65246	1	16657	16657		21.747	8.7042	1	1118500	+		38182	26105	27932	28164	37225	37225					0.08272826979850834
PALPLLCLLL	10	Unmodified	_PALPLLCLLL_					0	0	0			REV__ENSG00000126243|ENST00000246529|LRFN3	REV__ENSG00000126243|ENST00000246529|LRFN3	MULTI-SECPEP	A375_MHC_IP_R2	2	533.73974609375	2	533.340664	1064.66677	-0.68411	-0.00036486	-0.26131	-0.00013937	-0.94542	-0.00050423	533.3404350677469	132.65	0.50827	132.81	132.64	133.15	0.16643					17	9	3	0	0	0	0.94819	1	52190	52190		1.8442	0	1	7332500	+		38183	18383	27933	28165	37226	37226					0.13702782201266928
PALPLLCLLL	10	Unmodified	_PALPLLCLLL_					0	0	0			REV__ENSG00000126243|ENST00000246529|LRFN3	REV__ENSG00000126243|ENST00000246529|LRFN3	MULTI-MATCH	A375_MHC_IP_R1	1		2	533.340664	1064.66677	-0.90085	-0.00048046	-0.0016647	-8.8787E-07	-0.90252	-0.00048135	533.3405430327771	132.77	0.46027	132.77	132.64	133.1	0	-0.020772	0.00014958	NaN	1.8442	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8153200	+		38184	18383	27933	28165							0.13702782201266928
PALQTVPGP	9	Unmodified	_PALQTVPGP_					0	0	0		ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	MULTI-SECPEP	A375_MHC_IP_R1	1	439.6664123535156	2	440.25036	878.486168	-0.3599	-0.00015845	0.89765	0.00039519	0.53775	0.00023674	440.25073683681467	38.416	0.50996	38.416	38.118	38.628	0					10	9	2	0	0	0	0.73363	1	13069	13069		15.847	1.0089	1	2160700			38185	8443	27934	28166	37227	37227					0.04206399868758126
PALQTVPGP	9	Unmodified	_PALQTVPGP_					0	0	0		ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	MULTI-SECPEP	A375_MHC_IP_R2	2	439.6661071777344	2	440.25036	878.486168	-0.62012	-0.00027301	0.44099	0.00019415	-0.17913	-7.886E-05	440.2505420657879	37.564	0.3588	38.335	38.171	38.53	0.7709					10	6	2	0	0	0	0.60917	1	13807	13807		25.399	0	1	2168100			38186	8443	27934	28166	37228	37228					0.04206399868758126
PALSLCTNATT	11	Unmodified	_PALSLCTNATT_					0	0	0			REV__TIMD4|p.T201A|1|0.1|ENSG00000145850|chr5:156951590-156951590|T/C|missense_variant	REV__TIMD4|p.T201A|1|0.1|ENSG00000145850|chr5:156951590-156951590|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	363.9169616699219	3	364.51823	1090.53286	-0.018898	-6.8885E-06	1.6611	0.00060551	1.6422	0.00059862	364.8535445342232	31.85	0.6083	32.587	32.198	32.806	0.73691					20	11	3	0	0	0	0.82939	1	11158	11158		19.144	3.6055	1	2068300	+		38187	28114	27935	28167	37229	37229					-0.008785283622728457
PALYQPCSL	9	Unmodified	_PALYQPCSL_					0	0	0		ENST00000487398.3_1_9:36572986-36581650:+|nuORF	ENST00000487398.3_1_9:36572986-36581650:+|nuORF	ENST00000487398.3_1_9:36572986-36581650:+|nuORF	MSMS	A375_MHC_IP_R1	1	496.15924072265625	2	496.249503	990.484453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.959	1	68.959	68.459	69.459	0								0	0	0	0.15069	1	25016	25016		20.454	2.3186	1				38188	12597	27936	28168	37230	37230					-0.011169772115067644
PAMFMYDSE	9	Unmodified	_PAMFMYDSE_					0	0	0			REV__ENSG00000133124|ENST00000372129|IRS4	REV__ENSG00000133124|ENST00000372129|IRS4	MSMS	A375_MHC_IP_R2	2	545.697265625	2	545.714636	1089.41472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.114	1	22.733	22.233	23.233	0.61932								0	0	0	0.15486	1	7006	7006		8.5933	3.3626	1		+		38189	18710	27937	28169	37231	37231					-0.1264122394243259
PAMREAPT	8	Unmodified	_PAMREAPT_					0	0	0		ENSG00000198646|ENST00000359003|NCOA6;NCOA6|p.S1490L|1|0.4|ENSG00000198646|chr20:34741787-34741787|G/A|missense_variant	ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	MULTI-SECPEP	A375_MHC_IP_R2	2	436.1308898925781	2	436.71837	871.422187	-0.19108	-8.3449E-05	1.0182	0.00044468	0.82715	0.00036123	436.718808994658	90.112	0.51076	90.844	90.442	90.953	0.7318					13	9	2	0	0	0	0.93661	1	34258	34258		10.824	0	1	648080			38190	9294	27938	28170	37232	37232					-0.01866703559846883
PAMSLPLVN	9	Unmodified	_PAMSLPLVN_					0	0	0			REV__nc|ENSG00000148840|Q5VV67-2|PPRC1	REV__nc|ENSG00000148840|Q5VV67-2|PPRC1	MULTI-SECPEP	A375_MHC_IP_R2	2	941.9104614257812	1	941.512465	940.505189	-0.021061	-1.983E-05	-1.5353	-0.0014455	-1.5564	-0.0014654	941.511096731538	139.99	0.51361	140.05	139.85	140.37	0.059906					11	9	2	0	0	0	0.81254	1	54875	54875		2.0598	0	1	1644900	+		38191	19649	27939	28171	37233	37233					0.03255613168153104
PAMSLPLVN	9	Unmodified	_PAMSLPLVN_					0	0	0			REV__nc|ENSG00000148840|Q5VV67-2|PPRC1	REV__nc|ENSG00000148840|Q5VV67-2|PPRC1	MULTI-MATCH	A375_MHC_IP_R1	1		1	941.512465	940.505189	-0.34784	-0.0003275	-1.3614	-0.0012817	-1.7092	-0.0016092	941.5112934414934	140.08	0.35739	140.08	139.93	140.29	0	0.016467	7.7556E-05	NaN	2.0598	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2145900	+		38192	19649	27939	28171							0.03255613168153104
PANCTNELY	9	Unmodified	_PANCTNELY_					0	0	0		nc|ENSG00000066468|P21802-16|FGFR2;nc|ENSG00000066468|P21802-8|FGFR2;nc|ENSG00000066468|P21802-3|FGFR2;ENSG00000066468|ENST00000358487|FGFR2;nc|ENSG00000066468|P21802-18|FGFR2;nc|ENSG00000066468|P21802-5|FGFR2;nc|ENSG00000066468|P21802-6|FGFR2;nc|ENSG00000066468|P21802-17|FGFR2;nc|ENSG00000066468|P21802-2|FGFR2;nc|ENSG00000066468|P21802-23|FGFR2;nc|ENSG00000066468|P21802-21|FGFR2;nc|ENSG00000066468|P21802-15|FGFR2;nc|ENSG00000066468|P21802-20|FGFR2;nc|ENSG00000066468|P21802-4|FGFR2;nc|ENSG00000066468|P21802-22|FGFR2;ENST00000604236.5_1_10:123239373-123278228:-|nuORF	nc|ENSG00000066468|P21802-16|FGFR2	nc|ENSG00000066468|P21802-16|FGFR2	MULTI-SECPEP	A375_MHC_IP_R1	1	513.1688232421875	2	512.723849	1023.43315	-0.49612	-0.00025437	0.070261	3.6024E-05	-0.42586	-0.00021835	512.723829488852	34.129	0.45501	34.129	33.898	34.353	0					11	8	2	0	0	0	0.65246	1	11277	11277		15.847	11.091	1	2418300			38193	1413	27940	28172	37234	37234					-0.0776334597622963
PANEPVWV	8	Unmodified	_PANEPVWV_					0	0	0			REV__ENSG00000280165|ENST00000409204|PCDH20	REV__ENSG00000280165|ENST00000409204|PCDH20	MULTI-SECPEP	A375_MHC_IP_R2	2	456.2818908691406	2	456.23471	910.454868	-0.44897	-0.00020484	-2.1055	-0.00096058	-2.5544	-0.0011654	456.23404569282957	41.286	0.30355	42.06	41.895	42.198	0.77451					8	5	2	0	0	0	0.972	1	15258	15258		9.3474	1.4373	1	1445600	+		38194	22988	27941	28173	37235	37235					-0.003941731653412717
PANTQPTPLPQ	11	Unmodified	_PANTQPTPLPQ_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.E4343Kfs*13|1|0.36|ENSG00000055609|chr7:152148900-152148900|C/-|frameshift_variant;KMT2C|p.Q2128Rfs*25|1|0.04|ENSG00000055609|chr7:152181476-152181477|CT/-|frameshift_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-SECPEP	A375_MHC_IP_R1	1	1163.9151611328125	1	1163.60551	1162.59824	-0.20316	-0.0002364	-0.38248	-0.00044506	-0.58564	-0.00068145	1164.6060153328915	130.36	0.15173	130.36	130.26	130.41	0					4	2	2	0	0	0	0.86796	1	50187	50187		20.415	11.031	1	4987700			38195	1271	27942	28174	37236	37236					0.023442091550805344
PAPAAPRSPNL	11	Unmodified	_PAPAAPRSPNL_					0	0	0		ENSG00000168502|ENST00000695636|MTCL1;nc|ENSG00000168502|Q9Y4B5|MTCL1;MTCL1|p.P1448Afs*83|1|0.14|ENSG00000168502|chr18:8824888-8824889|-/G|frameshift_variant	ENSG00000168502|ENST00000695636|MTCL1	ENSG00000168502|ENST00000695636|MTCL1	MULTI-SECPEP	A375_MHC_IP_R1	1	545.6904296875	2	545.803823	1089.59309	-0.56778	-0.00030989	0.50062	0.00027324	-0.067159	-3.6656E-05	545.8041525473019	83.547	0.71163	83.547	83.075	83.786	0					23	13	2	0	0	0	0.98734	1	30441	30441		13.906	7.1829	1	1582100			38196	7312	27943	28175	37237	37237					0.05187950083131909
PAPAASGWSG	10	Unmodified	_PAPAASGWSG_					0	0	0			REV__ENST00000393279.2_1_2:96192658-96192829:+|nuORF	REV__ENST00000393279.2_1_2:96192658-96192829:+|nuORF	MSMS	A375_MHC_IP_R2	2	450.65838623046875	2	450.714142	899.413731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.905	1	48.667	48.167	49.167	0.76128								0	0	0	0.15308	1	17977	17977		10.824	0	1		+		38197	24291	27944	28176	37238	37238					-0.03999934204796318
PAPAATHT	8	Unmodified	_PAPAATHT_					0	0	0			REV__ENST00000589786.5_1_19:34287845-34297769:+|nuORF	REV__ENST00000589786.5_1_19:34287845-34297769:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	767.6205444335938	1	765.388979	764.381703	-0.80475	-0.00061595	-1.7503	-0.0013397	-2.555	-0.0019556	765.391897913235	117.86	0.15255	118.47	118.34	118.49	0.60909					6	2	3	0	0	0	0.77488	1	44669	44669		13.508	0	1	55354000	+		38198	23332	27945	28177	37239	37239					-0.009913018879615265
PAPAHPTFSL	10	Unmodified	_PAPAHPTFSL_					0	0	0		ENST00000467086.5_1_17:79817777-79817945:-|nuORF	ENST00000467086.5_1_17:79817777-79817945:-|nuORF	ENST00000467086.5_1_17:79817777-79817945:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	518.6953125	2	519.274367	1036.53418	-0.62293	-0.00032347	0.23459	0.00012182	-0.38835	-0.00020166	519.2746384330641	90.035	0.85983	90.035	89.476	90.336	0					29	16	3	0	0	0	0.76414	1	33132	33132		14.838	2.3067	1	2413800			38199	12275	27946	28178	37240	37240					0.017374737888076197
PAPAVANPD	9	Unmodified	_PAPAVANPD_					0	0	0			REV__ENST00000459765.1_1_1:109824234-109825347:-|nuORF	REV__ENST00000459765.1_1_1:109824234-109825347:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	426.6167907714844	2	426.216517	850.418482	0.031797	1.3552E-05	0.15343	6.5395E-05	0.18523	7.8947E-05	426.21657064113936	35.357	0.61226	35.357	35.064	35.676	0					19	11	2	0	0	0	0.64653	1	11725	11725		20.871	0	1	4617400	+		38200	18758	27947	28179	37241	37241					-0.012710500620528364
PAPGAWRL	8	Unmodified	_PAPGAWRL_					0	0	0			REV__ENST00000414876.5_1_2:231850605-231851715:-|nuORF	REV__ENST00000414876.5_1_2:231850605-231851715:-|nuORF	MSMS	A375_MHC_IP_R2	2	434.1418151855469	2	434.245412	866.476272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.796	1	45.565	45.065	46.065	0.7691								0	0	0	0.16876	1	16728	16728		15.768	4.6538	1		+		38201	24510	27948	28180	37242	37242					0.03769256654027231
PAPGPPSRRLW	11	Unmodified	_PAPGPPSRRLW_					0	0	0		ENST00000564426.5_1_16:2203418-2203928:+|nuORF	ENST00000564426.5_1_16:2203418-2203928:+|nuORF	ENST00000564426.5_1_16:2203418-2203928:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	411.1317443847656	3	411.899885	1232.67783	-0.2045	-8.4234E-05	-0.21225	-8.7425E-05	-0.41675	-0.00017166	411.89943425450247	37.734	0.3583	38.508	38.227	38.585	0.77451					10	6	2	0	0	0	0.99151	1	13750	13750		11.518	0	1	1219600			38202	13530	27949	28181	37243	37243					0.07079320619732243
PAPGPPSRRLW	11	Unmodified	_PAPGPPSRRLW_					0	0	0		ENST00000564426.5_1_16:2203418-2203928:+|nuORF	ENST00000564426.5_1_16:2203418-2203928:+|nuORF	ENST00000564426.5_1_16:2203418-2203928:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	411.899885	1232.67783	0.025199	1.0379E-05	-0.8201	-0.0003378	-0.7949	-0.00032742	411.8996535567701	38.471	0.30887	38.471	38.319	38.628	0	-0.018476	-9.0661E-05	NaN	7.9454	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	988600			38203	13530	27949	28181							0.07079320619732243
PAPKIQGR	8	Unmodified	_PAPKIQGR_					0	0	0		ENST00000380722.2_1_14:85996060-85996315:-|nuORF	ENST00000380722.2_1_14:85996060-85996315:-|nuORF	ENST00000380722.2_1_14:85996060-85996315:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	434.1419982910156	2	433.763969	865.513385	0.00013255	5.7497E-08	0.44883	0.00019468	0.44896	0.00019474	433.76399962877815	42.612	0.40388	42.612	42.386	42.79	0					12	7	2	0	0	0	0.972	1	14715	14715		5.7604	0	1	1096000			38204	11358	27950	28182	37244	37244					0.07524928199791248
PAPKIQGR	8	Unmodified	_PAPKIQGR_					0	0	0		ENST00000380722.2_1_14:85996060-85996315:-|nuORF	ENST00000380722.2_1_14:85996060-85996315:-|nuORF	ENST00000380722.2_1_14:85996060-85996315:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	433.763969	865.513385	-0.37877	-0.0001643	0.14679	6.3672E-05	-0.23198	-0.00010062	433.76388954981815	41.551	0.35453	42.325	42.098	42.453	0.77451	-0.14334	-0.00013759	NaN	5.7604	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1578600			38205	11358	27950	28182							0.07524928199791248
PAPPAAPGP	9	Unmodified	_PAPPAAPGP_					0	0	0			REV__ENSG00000179588|ENST00000319555|ZFPM1	REV__ENSG00000179588|ENST00000319555|ZFPM1	MULTI-SECPEP	A375_MHC_IP_R1	1	388.12152099609375	2	387.710871	773.407189	0.27695	0.00010738	0.20938	8.1179E-05	0.48633	0.00018856	387.71102640587105	50.964	0.35428	50.964	50.864	51.219	0					9	6	2	0	0	0	0.73662	1	18054	18054		9.3474	0	1	469770	+		38206	21571	27951	28183	37245	37245					0.011421726344678973
PAPPAKGG	8	Unmodified	_PAPPAKGG_					0	0	0			REV__ENST00000578895.5_1_17:80405330-80405492:-|nuORF	REV__ENST00000578895.5_1_17:80405330-80405492:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	694.2896728515625	1	694.388251	693.380974	-0.89287	-0.00062	1.9399	0.001347	1.047	0.00072705	694.3912990617536	134.92	0.55981	134.92	134.57	135.13	0					14	10	2	0	0	0	0.77842	1	51947	51947		0.69038	0	1	2530400	+		38207	26333	27952	28184	37246	37246					0.022019034630034184
PAPPLAQQWS	10	Unmodified	_PAPPLAQQWS_					0	0	0			REV__ENST00000550554.5_1_14:105955152-105957428:+|nuORF	REV__ENST00000550554.5_1_14:105955152-105957428:+|nuORF	MSMS	A375_MHC_IP_R1	1	547.6835327148438	2	547.785099	1093.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.45	1	104.45	103.95	104.95	0								0	0	0	0.14925	1	38352	38352		19.257	4.4187	1		+		38208	26036	27953	28185	37247	37247					0.012608588174998658
PAPPPPPPP	9	Unmodified	_PAPPPPPPP_					0	0	0		ENSG00000182601|ENST00000331351|HS3ST4;FHDC1|p.P31L|1|0.19|ENSG00000137460|chr4:152943149-152943149|C/T|missense_variant;ENSG00000197483|ENST00000598519|ZNF628;ENSG00000165821|ENST00000537235|SALL2;ENSG00000095539|ENST00000210633|SEMA4G;nc|ENSG00000095539|Q9NTN9|SEMA4G;ENSG00000167771|ENST00000301459|RCOR2;ENSG00000184937|ENST00000452863|WT1;nc|ENSG00000184937|P19544-8|WT1;nc|ENSG00000184937|P19544|WT1;nc|ENSG00000184937|P19544-4|WT1;nc|ENSG00000184937|P19544-3|WT1;nc|ENSG00000184937|P19544-2|WT1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ENSG00000205177|ENST00000379011|C11orf91;nc|nan|Q3C1V1-2|C11orf91;RB1|p.E166Dfs*6|1|0.84|ENSG00000139687|chr13:48345192-48345193|-/TGGA|frameshift_variant;ENST00000592092.1_1_19:36224173-36224410:+|nuORF;ENST00000378204.6_1_8:119123785-119123992:-|nuORF;ENST00000263228.3_1_9:33817570-33817774:+|nuORF;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;ENSG00000137460|ENST00000511601|FHDC1;nc|ENSG00000103495|P56270-3|MAZ;ENSG00000103495|ENST00000322945|MAZ;nc|ENSG00000103495|P56270-2|MAZ;MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant;ENSG00000105429|ENST00000251268|MEGF8;nc|ENSG00000105429|Q7Z7M0-2|MEGF8;RB1|p.L743*|1|0.55|ENSG00000139687|chr13:48465013-48465043|TTGATCAAAGAAGAGGAGTATGATTCTATTA/-|frameshift_variant;RB1|p.L769Ffs*26|1|0.65|ENSG00000139687|chr13:48465088-48465089|-/T|frameshift_variant;RB1|p.L797Yfs*13|1|0.51|ENSG00000139687|chr13:48465268-48465268|T/-|frameshift_variant;ENSG00000139687|ENST00000267163|RB1;ENSG00000142235|ENST00000600059|LMTK3;ENSG00000158195|ENST00000618852|WASF2;ENSG00000173166|ENST00000319170|RAPH1;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.T2707Mfs*5|1|0.21|ENSG00000196367|chr7:98976664-98976688|CGCTGATGTTGGAGCACCAGGCTTT/-|frameshift_variant;TRRAP|p.I1891Sfs*37|1|0.32|ENSG00000196367|chr7:98953393-98953393|T/-|frameshift_variant;ENSG00000215474|ENST00000425639|SKOR2;ENSG00000272333|ENST00000420124|KMT2B;nc|ENSG00000165821|Q9Y467|SALL2	ENSG00000182601|ENST00000331351|HS3ST4;nc|ENSG00000171634|Q12830-4|BPTF;REV__ENSG00000112320|ENST00000317357|SOBP;REV__TPRN|p.L315Pfs*136|1|0.34|ENSG00000176058|chr9:137199768-137199769|-/GG|frameshift_variant;ENSG00000137460|ENST00000511601|FHDC1;REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000103495|P56270-3|MAZ;MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant;RB1|p.L743*|1|0.55|ENSG00000139687|chr13:48465013-48465043|TTGATCAAAGAAGAGGAGTATGATTCTATTA/-|frameshift_variant;ENSG00000142235|ENST00000600059|LMTK3;ENSG00000158195|ENST00000618852|WASF2;ENSG00000173166|ENST00000319170|RAPH1;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;ENSG00000215474|ENST00000425639|SKOR2;ENSG00000272333|ENST00000420124|KMT2B;nc|ENSG00000165821|Q9Y467|SALL2;REV__ENSG00000060749|ENST00000650167|QSER1;REV__ENSG00000077420|ENST00000376236|APBB1IP;REV__ENSG00000099822|ENST00000251287|HCN2;REV__ENSG00000109920|ENST00000263773|FNBP4;REV__ENSG00000126464|ENST00000418929|PRR12;REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;REV__nc|ENSG00000292372|Q9NQA3|WASH6P;REV__ENSG00000188620|ENST00000357878|HMX3;REV__nc|ENSG00000204463|P46379-5|BAG6;REV__ENSG00000274588|ENST00000611977|DGKK;REV__ENST00000403681.6_2_12:66218024-66218900:+|nuORF;REV__nc|ENSG00000185596|C4AMC7|WASH3P	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	A375_MHC_IP_R1	1	434.1419677734375	2	433.742171	865.469789	-0.1985	-8.6096E-05	0.28525	0.00012373	0.086754	3.7629E-05	433.74221079794216	37.661	6.0963	37.661	36.795	42.891	0					225	119	3	0	0	0	0.0095977	6	12495	12495;12721;12958;13193;13447;13692		109.15	0	1	15524000			38209	9031;7623;9990;7773;16123;5300;4883;2606;5102;22516;16446;16694;18386;27414;21694;17026;22101;22958;17603;18962;9646;24418;6293;2456;21383;17726;14739;8422	27954	28186	37248;37249;37250;37251;37252;37253	37248					0.031673187026513006
PAPPPPPPP	9	Unmodified	_PAPPPPPPP_					0	0	0		ENSG00000182601|ENST00000331351|HS3ST4;FHDC1|p.P31L|1|0.19|ENSG00000137460|chr4:152943149-152943149|C/T|missense_variant;ENSG00000197483|ENST00000598519|ZNF628;ENSG00000165821|ENST00000537235|SALL2;ENSG00000095539|ENST00000210633|SEMA4G;nc|ENSG00000095539|Q9NTN9|SEMA4G;ENSG00000167771|ENST00000301459|RCOR2;ENSG00000184937|ENST00000452863|WT1;nc|ENSG00000184937|P19544-8|WT1;nc|ENSG00000184937|P19544|WT1;nc|ENSG00000184937|P19544-4|WT1;nc|ENSG00000184937|P19544-3|WT1;nc|ENSG00000184937|P19544-2|WT1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ENSG00000205177|ENST00000379011|C11orf91;nc|nan|Q3C1V1-2|C11orf91;RB1|p.E166Dfs*6|1|0.84|ENSG00000139687|chr13:48345192-48345193|-/TGGA|frameshift_variant;ENST00000592092.1_1_19:36224173-36224410:+|nuORF;ENST00000378204.6_1_8:119123785-119123992:-|nuORF;ENST00000263228.3_1_9:33817570-33817774:+|nuORF;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;ENSG00000137460|ENST00000511601|FHDC1;nc|ENSG00000103495|P56270-3|MAZ;ENSG00000103495|ENST00000322945|MAZ;nc|ENSG00000103495|P56270-2|MAZ;MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant;ENSG00000105429|ENST00000251268|MEGF8;nc|ENSG00000105429|Q7Z7M0-2|MEGF8;RB1|p.L743*|1|0.55|ENSG00000139687|chr13:48465013-48465043|TTGATCAAAGAAGAGGAGTATGATTCTATTA/-|frameshift_variant;RB1|p.L769Ffs*26|1|0.65|ENSG00000139687|chr13:48465088-48465089|-/T|frameshift_variant;RB1|p.L797Yfs*13|1|0.51|ENSG00000139687|chr13:48465268-48465268|T/-|frameshift_variant;ENSG00000139687|ENST00000267163|RB1;ENSG00000142235|ENST00000600059|LMTK3;ENSG00000158195|ENST00000618852|WASF2;ENSG00000173166|ENST00000319170|RAPH1;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.T2707Mfs*5|1|0.21|ENSG00000196367|chr7:98976664-98976688|CGCTGATGTTGGAGCACCAGGCTTT/-|frameshift_variant;TRRAP|p.I1891Sfs*37|1|0.32|ENSG00000196367|chr7:98953393-98953393|T/-|frameshift_variant;ENSG00000215474|ENST00000425639|SKOR2;ENSG00000272333|ENST00000420124|KMT2B;nc|ENSG00000165821|Q9Y467|SALL2	ENSG00000182601|ENST00000331351|HS3ST4;nc|ENSG00000171634|Q12830-4|BPTF;REV__ENSG00000112320|ENST00000317357|SOBP;REV__TPRN|p.L315Pfs*136|1|0.34|ENSG00000176058|chr9:137199768-137199769|-/GG|frameshift_variant;ENSG00000137460|ENST00000511601|FHDC1;REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000103495|P56270-3|MAZ;MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant;RB1|p.L743*|1|0.55|ENSG00000139687|chr13:48465013-48465043|TTGATCAAAGAAGAGGAGTATGATTCTATTA/-|frameshift_variant;ENSG00000142235|ENST00000600059|LMTK3;ENSG00000158195|ENST00000618852|WASF2;ENSG00000173166|ENST00000319170|RAPH1;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;ENSG00000215474|ENST00000425639|SKOR2;ENSG00000272333|ENST00000420124|KMT2B;nc|ENSG00000165821|Q9Y467|SALL2;REV__ENSG00000060749|ENST00000650167|QSER1;REV__ENSG00000077420|ENST00000376236|APBB1IP;REV__ENSG00000099822|ENST00000251287|HCN2;REV__ENSG00000109920|ENST00000263773|FNBP4;REV__ENSG00000126464|ENST00000418929|PRR12;REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;REV__nc|ENSG00000292372|Q9NQA3|WASH6P;REV__ENSG00000188620|ENST00000357878|HMX3;REV__nc|ENSG00000204463|P46379-5|BAG6;REV__ENSG00000274588|ENST00000611977|DGKK;REV__ENST00000403681.6_2_12:66218024-66218900:+|nuORF;REV__nc|ENSG00000185596|C4AMC7|WASH3P	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	A375_MHC_IP_R1	1	434.14208984375	2	433.742171	865.469789	0.050087	2.1725E-05	-0.26135	-0.00011336	-0.21126	-9.1631E-05	433.741940745249	44.042	4.3196	44.042	42.891	47.211	0					123	84	2	0	0	0	0.011986	3	15262	15262;15581;15823		93.763	0	1	2212400			38210	9031;7623;9990;7773;16123;5300;4883;2606;5102;22516;16446;16694;18386;27414;21694;17026;22101;22958;17603;18962;9646;24418;6293;2456;21383;17726;14739;8422	27954	28186	37254;37255;37256	37254					0.031673187026513006
PAPPPPPPP	9	Unmodified	_PAPPPPPPP_					0	0	0		ENSG00000182601|ENST00000331351|HS3ST4;FHDC1|p.P31L|1|0.19|ENSG00000137460|chr4:152943149-152943149|C/T|missense_variant;ENSG00000197483|ENST00000598519|ZNF628;ENSG00000165821|ENST00000537235|SALL2;ENSG00000095539|ENST00000210633|SEMA4G;nc|ENSG00000095539|Q9NTN9|SEMA4G;ENSG00000167771|ENST00000301459|RCOR2;ENSG00000184937|ENST00000452863|WT1;nc|ENSG00000184937|P19544-8|WT1;nc|ENSG00000184937|P19544|WT1;nc|ENSG00000184937|P19544-4|WT1;nc|ENSG00000184937|P19544-3|WT1;nc|ENSG00000184937|P19544-2|WT1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ENSG00000205177|ENST00000379011|C11orf91;nc|nan|Q3C1V1-2|C11orf91;RB1|p.E166Dfs*6|1|0.84|ENSG00000139687|chr13:48345192-48345193|-/TGGA|frameshift_variant;ENST00000592092.1_1_19:36224173-36224410:+|nuORF;ENST00000378204.6_1_8:119123785-119123992:-|nuORF;ENST00000263228.3_1_9:33817570-33817774:+|nuORF;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;ENSG00000137460|ENST00000511601|FHDC1;nc|ENSG00000103495|P56270-3|MAZ;ENSG00000103495|ENST00000322945|MAZ;nc|ENSG00000103495|P56270-2|MAZ;MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant;ENSG00000105429|ENST00000251268|MEGF8;nc|ENSG00000105429|Q7Z7M0-2|MEGF8;RB1|p.L743*|1|0.55|ENSG00000139687|chr13:48465013-48465043|TTGATCAAAGAAGAGGAGTATGATTCTATTA/-|frameshift_variant;RB1|p.L769Ffs*26|1|0.65|ENSG00000139687|chr13:48465088-48465089|-/T|frameshift_variant;RB1|p.L797Yfs*13|1|0.51|ENSG00000139687|chr13:48465268-48465268|T/-|frameshift_variant;ENSG00000139687|ENST00000267163|RB1;ENSG00000142235|ENST00000600059|LMTK3;ENSG00000158195|ENST00000618852|WASF2;ENSG00000173166|ENST00000319170|RAPH1;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.T2707Mfs*5|1|0.21|ENSG00000196367|chr7:98976664-98976688|CGCTGATGTTGGAGCACCAGGCTTT/-|frameshift_variant;TRRAP|p.I1891Sfs*37|1|0.32|ENSG00000196367|chr7:98953393-98953393|T/-|frameshift_variant;ENSG00000215474|ENST00000425639|SKOR2;ENSG00000272333|ENST00000420124|KMT2B;nc|ENSG00000165821|Q9Y467|SALL2	ENSG00000182601|ENST00000331351|HS3ST4;nc|ENSG00000171634|Q12830-4|BPTF;REV__ENSG00000112320|ENST00000317357|SOBP;REV__TPRN|p.L315Pfs*136|1|0.34|ENSG00000176058|chr9:137199768-137199769|-/GG|frameshift_variant;ENSG00000137460|ENST00000511601|FHDC1;REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000103495|P56270-3|MAZ;MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant;RB1|p.L743*|1|0.55|ENSG00000139687|chr13:48465013-48465043|TTGATCAAAGAAGAGGAGTATGATTCTATTA/-|frameshift_variant;ENSG00000142235|ENST00000600059|LMTK3;ENSG00000158195|ENST00000618852|WASF2;ENSG00000173166|ENST00000319170|RAPH1;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;ENSG00000215474|ENST00000425639|SKOR2;ENSG00000272333|ENST00000420124|KMT2B;nc|ENSG00000165821|Q9Y467|SALL2;REV__ENSG00000060749|ENST00000650167|QSER1;REV__ENSG00000077420|ENST00000376236|APBB1IP;REV__ENSG00000099822|ENST00000251287|HCN2;REV__ENSG00000109920|ENST00000263773|FNBP4;REV__ENSG00000126464|ENST00000418929|PRR12;REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;REV__nc|ENSG00000292372|Q9NQA3|WASH6P;REV__ENSG00000188620|ENST00000357878|HMX3;REV__nc|ENSG00000204463|P46379-5|BAG6;REV__ENSG00000274588|ENST00000611977|DGKK;REV__ENST00000403681.6_2_12:66218024-66218900:+|nuORF;REV__nc|ENSG00000185596|C4AMC7|WASH3P	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	A375_MHC_IP_R2	2	434.1417541503906	2	433.742171	865.469789	-0.57489	-0.00024935	0.31121	0.00013499	-0.26367	-0.00011437	433.742166099865	37.242	6.9715	38.013	36.953	43.925	0.7709					296	136	4	0	0	0	0.0095977	7	13314	13314;13546;13786;13869;14038;14287;14754		109.15	0	1	14961000			38211	9031;7623;9990;7773;16123;5300;4883;2606;5102;22516;16446;16694;18386;27414;21694;17026;22101;22958;17603;18962;9646;24418;6293;2456;21383;17726;14739;8422	27954	28186	37257;37258;37259;37260;37261;37262;37263	37257					0.031673187026513006
PAPPPPPPP	9	Unmodified	_PAPPPPPPP_					0	0	0		ENSG00000182601|ENST00000331351|HS3ST4;FHDC1|p.P31L|1|0.19|ENSG00000137460|chr4:152943149-152943149|C/T|missense_variant;ENSG00000197483|ENST00000598519|ZNF628;ENSG00000165821|ENST00000537235|SALL2;ENSG00000095539|ENST00000210633|SEMA4G;nc|ENSG00000095539|Q9NTN9|SEMA4G;ENSG00000167771|ENST00000301459|RCOR2;ENSG00000184937|ENST00000452863|WT1;nc|ENSG00000184937|P19544-8|WT1;nc|ENSG00000184937|P19544|WT1;nc|ENSG00000184937|P19544-4|WT1;nc|ENSG00000184937|P19544-3|WT1;nc|ENSG00000184937|P19544-2|WT1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ENSG00000205177|ENST00000379011|C11orf91;nc|nan|Q3C1V1-2|C11orf91;RB1|p.E166Dfs*6|1|0.84|ENSG00000139687|chr13:48345192-48345193|-/TGGA|frameshift_variant;ENST00000592092.1_1_19:36224173-36224410:+|nuORF;ENST00000378204.6_1_8:119123785-119123992:-|nuORF;ENST00000263228.3_1_9:33817570-33817774:+|nuORF;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;ENSG00000137460|ENST00000511601|FHDC1;nc|ENSG00000103495|P56270-3|MAZ;ENSG00000103495|ENST00000322945|MAZ;nc|ENSG00000103495|P56270-2|MAZ;MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant;ENSG00000105429|ENST00000251268|MEGF8;nc|ENSG00000105429|Q7Z7M0-2|MEGF8;RB1|p.L743*|1|0.55|ENSG00000139687|chr13:48465013-48465043|TTGATCAAAGAAGAGGAGTATGATTCTATTA/-|frameshift_variant;RB1|p.L769Ffs*26|1|0.65|ENSG00000139687|chr13:48465088-48465089|-/T|frameshift_variant;RB1|p.L797Yfs*13|1|0.51|ENSG00000139687|chr13:48465268-48465268|T/-|frameshift_variant;ENSG00000139687|ENST00000267163|RB1;ENSG00000142235|ENST00000600059|LMTK3;ENSG00000158195|ENST00000618852|WASF2;ENSG00000173166|ENST00000319170|RAPH1;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.T2707Mfs*5|1|0.21|ENSG00000196367|chr7:98976664-98976688|CGCTGATGTTGGAGCACCAGGCTTT/-|frameshift_variant;TRRAP|p.I1891Sfs*37|1|0.32|ENSG00000196367|chr7:98953393-98953393|T/-|frameshift_variant;ENSG00000215474|ENST00000425639|SKOR2;ENSG00000272333|ENST00000420124|KMT2B;nc|ENSG00000165821|Q9Y467|SALL2	ENSG00000182601|ENST00000331351|HS3ST4;nc|ENSG00000171634|Q12830-4|BPTF;REV__ENSG00000112320|ENST00000317357|SOBP;REV__TPRN|p.L315Pfs*136|1|0.34|ENSG00000176058|chr9:137199768-137199769|-/GG|frameshift_variant;ENSG00000137460|ENST00000511601|FHDC1;REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000103495|P56270-3|MAZ;MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant;RB1|p.L743*|1|0.55|ENSG00000139687|chr13:48465013-48465043|TTGATCAAAGAAGAGGAGTATGATTCTATTA/-|frameshift_variant;ENSG00000142235|ENST00000600059|LMTK3;ENSG00000158195|ENST00000618852|WASF2;ENSG00000173166|ENST00000319170|RAPH1;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;ENSG00000215474|ENST00000425639|SKOR2;ENSG00000272333|ENST00000420124|KMT2B;nc|ENSG00000165821|Q9Y467|SALL2;REV__ENSG00000060749|ENST00000650167|QSER1;REV__ENSG00000077420|ENST00000376236|APBB1IP;REV__ENSG00000099822|ENST00000251287|HCN2;REV__ENSG00000109920|ENST00000263773|FNBP4;REV__ENSG00000126464|ENST00000418929|PRR12;REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;REV__nc|ENSG00000292372|Q9NQA3|WASH6P;REV__ENSG00000188620|ENST00000357878|HMX3;REV__nc|ENSG00000204463|P46379-5|BAG6;REV__ENSG00000274588|ENST00000611977|DGKK;REV__ENST00000403681.6_2_12:66218024-66218900:+|nuORF;REV__nc|ENSG00000185596|C4AMC7|WASH3P	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	A375_MHC_IP_R2	2	434.1418151855469	2	433.742171	865.469789	-0.17042	-7.392E-05	-0.41034	-0.00017798	-0.58076	-0.0002519	433.7419735777391	43.566	3.0383	44.338	43.926	46.964	0.7724					83	59	2	0	0	0	0.030079	1	16728	16728		93.763	0	1	2124900			38212	9031;7623;9990;7773;16123;5300;4883;2606;5102;22516;16446;16694;18386;27414;21694;17026;22101;22958;17603;18962;9646;24418;6293;2456;21383;17726;14739;8422	27954	28186	37264	37264					0.031673187026513006
PAPPRSRS	8	Unmodified	_PAPPRSRS_					0	0	0		ENST00000226574.8_1_4:103422735-103446686:+|nuORF;ENST00000511926.5_1_4:103422735-103432090:+|nuORF	ENST00000226574.8_1_4:103422735-103446686:+|nuORF	ENST00000226574.8_1_4:103422735-103446686:+|nuORF	MSMS	A375_MHC_IP_R1	1	434.1419982910156	2	434.243401	866.472249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.552	1	40.552	40.052	41.052	0								0	0	0	0.16876	1	13942	13942		11.114	0	1				38213	10122	27955	28187	37265	37265					0.03367167160331519
PAPPRSRS	8	Unmodified	_PAPPRSRS_					0	0	0		ENST00000226574.8_1_4:103422735-103446686:+|nuORF;ENST00000511926.5_1_4:103422735-103432090:+|nuORF	ENST00000226574.8_1_4:103422735-103446686:+|nuORF	ENST00000226574.8_1_4:103422735-103446686:+|nuORF	MSMS	A375_MHC_IP_R1	1	434.14208984375	2	434.243401	866.472249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.166	1	43.166	42.666	43.666	0								0	0	0	0.16876	1	14994	14994		11.114	0	1				38214	10122	27955	28187	37266	37266					0.03367167160331519
PAPSHRQSL	9	Unmodified	_PAPSHRQSL_					0	0	0			REV__ENSG00000198933|ENST00000578982|TBKBP1	REV__ENSG00000198933|ENST00000578982|TBKBP1	MULTI-MSMS	A375_MHC_IP_R2	2	496.6634521484375	2	496.76724	991.519927	-0.41148	-0.00020441	2.026	0.0010065	1.6146	0.00080206	496.76804542494256	42.522	0.71058	43.294	43.014	43.724	0.7724					20	13	2	0	0	0	0.60101	1	15946	15946		14.838	0	1	3687700	+		38215	22452	27956	28188	37267	37267					0.023828213605156634
PAQIRAVL	8	Unmodified	_PAQIRAVL_					0	0	0		ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	MULTI-SECPEP	A375_MHC_IP_R2	2	434.6739196777344	2	434.27417	866.533787	-0.34789	-0.00015108	0.074522	3.2363E-05	-0.27337	-0.00011872	434.274153857956	41.586	0.35673	42.36	42.198	42.555	0.77451					11	6	2	0	0	0	0.97144	1	15453	15453		9.3474	1.4373	1	2028300			38216	2834	27957	28189	37268	37268					0.09518098859598467
PAQKTERKES	10	Unmodified	_PAQKTERKES_					0	0	0		nc|ENSG00000095787|Q9BTA9-3|WAC;nc|ENSG00000095787|Q9BTA9-2|WAC;ENSG00000095787|ENST00000354911|WAC;ENST00000476046.1_1_10:28884921-28897371:+|nuORF	nc|ENSG00000095787|Q9BTA9-3|WAC	nc|ENSG00000095787|Q9BTA9-3|WAC	MSMS	A375_MHC_IP_R2	2	587.2246704101562	2	587.314751	1172.61495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.175	1	55.926	55.426	56.426	0.75075								0	0	0	0.15207	1	20839	20839		13.906	2.4113	1				38217	2049	27958	28190	37269	37269					0.03554710041044018
PAQLATPPGW	10	Unmodified	_PAQLATPPGW_					0	0	0		ENSG00000254585|ENST00000650528|MAGEL2	ENSG00000254585|ENST00000650528|MAGEL2	ENSG00000254585|ENST00000650528|MAGEL2	MULTI-MSMS	A375_MHC_IP_R1	1	519.3035888671875	2	519.274367	1036.53418	-0.72138	-0.0003746	-1.0998	-0.00057112	-1.8212	-0.00094572	519.2736305565619	84.941	0.91679	84.941	84.545	85.462	0					23	17	2	0	0	0	0.62155	1	31166	31166		19.257	3.4098	1	1084000			38218	9879	27959	28191	37270	37270					0.01737473788830357
PAQPPPEPPR	10	Unmodified	_PAQPPPEPPR_					0	0	0		ENSG00000134508|ENST00000256925|CABLES1	ENSG00000134508|ENST00000256925|CABLES1	ENSG00000134508|ENST00000256925|CABLES1	MULTI-SECPEP	A375_MHC_IP_R2	2	363.2813415527344	3	362.529458	1084.56654	-0.50677	-0.00018372	-0.24745	-8.9708E-05	-0.75422	-0.00027343	362.52947571331885	26.546	0.50647	27.206	26.857	27.363	0.65992					12	9	2	0	0	0	0.6774	1	9050	9050		23.801	4.1751	1	1977200			38219	4582	27960	28192	37271	37271					0.027642611918054172
PAQRQRLWY	9	Unmodified	_PAQRQRLWY_					0	0	0			REV__nc|ENSG00000172116|P10966-7|CD8B	REV__nc|ENSG00000172116|P10966-7|CD8B	MULTI-SECPEP	A375_MHC_IP_R2	2	609.5135498046875	2	609.330539	1216.64652	-0.2865	-0.00017458	-0.96556	-0.00058834	-1.2521	-0.00076292	609.3297140538659	93.981	0.35484	94.726	94.463	94.818	0.74474					14	6	3	0	0	0	0.69504	1	35631	35631		18.135	9.3896	1	1636600	+		38220	21121	27961	28193	37272	37272					0.04686747585674311
PAQRWRQL	8	Unmodified	_PAQRWRQL_					0	0	0			REV__ENST00000472057.1_1_22:29727525-29736761:-|nuORF	REV__ENST00000472057.1_1_22:29727525-29736761:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	527.1856079101562	2	527.798875	1053.5832	-0.97614	-0.0005152	-1.1211	-0.00059174	-2.0973	-0.0011069	527.7983366003823	29.227	0.40593	29.227	29.047	29.453	0					9	7	2	0	0	0	0.93416	1	9217	9217		9.3474	0	1	3759400	+		38221	25129	27962	28194	37273	37273					0.05854806868410378
PAQWTCWEWYW	11	Unmodified	_PAQWTCWEWYW_					0	0	0		ENST00000409198.5_2_2:152506865-152507290:-|nuORF	ENST00000409198.5_2_2:152506865-152507290:-|nuORF	ENST00000409198.5_2_2:152506865-152507290:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	778.7263793945312	2	778.326805	1554.63906	-0.90913	-0.0007076	0.85528	0.00066569	-0.053845	-4.1909E-05	778.3277439296872	78.57	0.35394	79.315	79.084	79.438	0.74473					11	6	2	0	0	0	0.99921	1	29873	29873		3.2813	1.7994	1	1995700			38222	11626	27963	28195	37274	37274					-0.11607772796946847
PAQWTCWEWYW	11	Unmodified	_PAQWTCWEWYW_					0	0	0		ENST00000409198.5_2_2:152506865-152507290:-|nuORF	ENST00000409198.5_2_2:152506865-152507290:-|nuORF	ENST00000409198.5_2_2:152506865-152507290:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	778.326805	1554.63906	-0.3722	-0.00028969	0.071549	5.5689E-05	-0.30065	-0.00023401	778.828653184004	79.292	0.3086	79.292	79.161	79.47	0	-0.011466	-0.00059904	NaN	3.2813	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1552700			38223	11626	27963	28195							-0.11607772796946847
PAQYVRVYP	9	Unmodified	_PAQYVRVYP_					0	0	0		nc|ENSG00000118257|O60462-2|NRP2;ENSG00000118257|ENST00000357785|NRP2;nc|ENSG00000118257|O60462|NRP2;nc|ENSG00000118257|O60462-4|NRP2;nc|ENSG00000118257|O60462-5|NRP2	nc|ENSG00000118257|O60462-2|NRP2	nc|ENSG00000118257|O60462-2|NRP2	MULTI-SECPEP	A375_MHC_IP_R2	2	364.91357421875	3	364.86607	1091.57638	-0.3302	-0.00012048	-1.2047	-0.00043956	-1.5349	-0.00056003	364.86605481506297	22.508	0.25676	23.138	22.907	23.164	0.63014					8	4	3	0	0	0	0.77003	1	7078	7078		4.5289	0	1	732090			38224	3534	27964	28196	37275	37275					0.034254491971978496
PARGFHFV	8	Unmodified	_PARGFHFV_					0	0	0		ENSG00000121904|ENST00000373381|CSMD2;nc|ENSG00000121904|Q7Z408|CSMD2;nc|ENSG00000121904|Q7Z408-2|CSMD2	ENSG00000121904|ENST00000373381|CSMD2	ENSG00000121904|ENST00000373381|CSMD2	MULTI-MSMS	A375_MHC_IP_R2	2	466.1510009765625	2	465.750862	929.487171	-0.46136	-0.00021488	0.69118	0.00032192	0.22982	0.00010704	465.7512221925278	139.98	0.46245	140.04	139.8	140.26	0.059906					21	8	3	0	0	0	0.77842	1	54805	54805		0.69038	0.69038	1	3495000			38225	3748	27965	28197	37276	37276					0.019606590283160585
PARGLELL	8	Unmodified	_PARGLELL_					0	0	0		ENSG00000187862|ENST00000368236|TTC24;TTC24|p.A529Gfs*12|1|0.29|ENSG00000187862|chr1:156585964-156585977|CCCATCTTCCATTT/-|frameshift_variant	ENSG00000187862|ENST00000368236|TTC24	ENSG00000187862|ENST00000368236|TTC24	MULTI-SECPEP	A375_MHC_IP_R1	1	434.6744689941406	2	434.766178	867.517802	-0.56628	-0.0002462	0.5991	0.00026047	0.032828	1.4272E-05	434.76631338906765	67.929	0.55582	67.929	67.603	68.159	0					18	10	2	0	0	0	0.92636	1	24668	24668		23.148	0	1	2279000			38226	8864	27966	28198	37277	37277					0.07874392622716186
PARGLELL	8	Unmodified	_PARGLELL_					0	0	0		ENSG00000187862|ENST00000368236|TTC24;TTC24|p.A529Gfs*12|1|0.29|ENSG00000187862|chr1:156585964-156585977|CCCATCTTCCATTT/-|frameshift_variant	ENSG00000187862|ENST00000368236|TTC24	ENSG00000187862|ENST00000368236|TTC24	MULTI-SECPEP	A375_MHC_IP_R2	2	435.166015625	2	434.766178	867.517802	-0.34	-0.00014782	0.47518	0.00020659	0.13519	5.8774E-05	434.7662338191422	66.886	0.55873	67.623	67.342	67.9	0.73631					19	10	3	0	0	0	0.84748	1	25323	25323		36.044	0	1	2771500			38227	8864	27966	28198	37278	37278					0.07874392622716186
PARGPLWA	8	Unmodified	_PARGPLWA_					0	0	0		ENST00000483405.5_2_16:29911961-29916194:+|nuORF	ENST00000483405.5_2_16:29911961-29916194:+|nuORF	ENST00000483405.5_2_16:29911961-29916194:+|nuORF	MSMS	A375_MHC_IP_R2	2	434.1416931152344	2	434.245412	866.476272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.848	1	42.622	42.122	43.122	0.77451								0	0	0	0.16876	1	15548	15548		11.114	0.93107	1				38228	12542	27967	28199	37279	37279					0.03769256654027231
PARGPLWA	8	Unmodified	_PARGPLWA_					0	0	0		ENST00000483405.5_2_16:29911961-29916194:+|nuORF	ENST00000483405.5_2_16:29911961-29916194:+|nuORF	ENST00000483405.5_2_16:29911961-29916194:+|nuORF	MSMS	A375_MHC_IP_R2	2	434.14178466796875	2	434.245412	866.476272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.513	1	43.286	42.786	43.786	0.7724								0	0	0	0.16876	1	15816	15816		11.114	3.2043	1				38229	12542	27967	28199	37280	37280					0.03769256654027231
PARLNRRVRT	10	Unmodified	_PARLNRRVRT_					0	0	0			REV__nc|ENSG00000155090|Q13118-4|KLF10	REV__nc|ENSG00000155090|Q13118-4|KLF10	MSMS	A375_MHC_IP_R1	1	619.9402465820312	2	619.881262	1237.74797	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.26	1	113.26	112.76	113.76	0								0	0	0	0.1552	1	41515	41515		3.9444	0.3479	1		+		38230	27301	27968	28200	37281	37281					0.1386061900821005
PARSVVPTHP	10	Unmodified	_PARSVVPTHP_					0	0	0		ENST00000529517.1_2_17:21191324-21199075:+|nuORF	ENST00000529517.1_2_17:21191324-21199075:+|nuORF	ENST00000529517.1_2_17:21191324-21199075:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	354.6015625	3	354.201452	1059.58253	0.089959	3.1863E-05	0.38929	0.00013789	0.47924	0.00016975	354.2015564340077	38.704	0.56285	38.704	38.319	38.882	0					20	10	3	0	0	0	0.61662	1	13138	13138		19.626	2.1833	1	6213400			38231	13130	27969	28201	37282	37282					0.055119674287197995
PARSVVPTHP	10	Unmodified	_PARSVVPTHP_					0	0	0		ENST00000529517.1_2_17:21191324-21199075:+|nuORF	ENST00000529517.1_2_17:21191324-21199075:+|nuORF	ENST00000529517.1_2_17:21191324-21199075:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	354.6015319824219	3	354.201452	1059.58253	-0.39344	-0.00013936	0.18475	6.5437E-05	-0.2087	-7.392E-05	354.2015167485433	37.836	0.56441	38.611	38.382	38.946	0.77451					20	10	3	0	0	0	0.89761	1	13867	13867		19.626	7.3853	1	10163000			38232	13130	27969	28201	37283	37283					0.055119674287197995
PARYFRSVL	9	Unmodified	_PARYFRSVL_					0	0	0			REV__ENSG00000112739|ENST00000337659|PRPF4B	REV__ENSG00000112739|ENST00000337659|PRPF4B	MULTI-SECPEP	A375_MHC_IP_R2	2	370.9330749511719	3	370.213581	1107.61891	0.28766	0.00010649	0.73695	0.00027283	1.0246	0.00037932	370.21349186657625	45.383	0.60612	46.148	45.846	46.453	0.76518					25	11	4	0	0	0	0.80535	1	16845	16845		2.2828	1.5062	1	2970600	+		38233	17752	27970	28202	37284	37284					0.06940844325413309
PASCIPRNW	9	Unmodified	_PASCIPRNW_					0	0	0			REV__SPTLC3|p.P136L|1|0.18|ENSG00000172296|chr20:13072359-13072359|C/T|missense_variant	REV__SPTLC3|p.P136L|1|0.18|ENSG00000172296|chr20:13072359-13072359|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	522.664794921875	2	522.258194	1042.50183	-0.65116	-0.00034007	-0.63799	-0.0003332	-1.2892	-0.00067327	522.2578626597344	27.718	0.50427	27.718	27.482	27.987	0					18	9	3	0	0	0	0.60101	1	8514	8514		14.838	14.838	1	4360200	+		38234	21135	27971	28203	37285	37285					-0.017716368858600617
PASCIPRNW	9	Unmodified	_PASCIPRNW_					0	0	0			REV__SPTLC3|p.P136L|1|0.18|ENSG00000172296|chr20:13072359-13072359|C/T|missense_variant	REV__SPTLC3|p.P136L|1|0.18|ENSG00000172296|chr20:13072359-13072359|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	522.258194	1042.50183	-0.67061	-0.00035023	-0.094514	-4.9361E-05	-0.76512	-0.00039959	522.2581102299638	27.088	0.51287	27.766	27.382	27.895	0.67857	0.024166	0.00017863	NaN	14.838	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6616200	+		38235	21135	27971	28203							-0.017716368858600617
PASCTTSRL	9	Unmodified	_PASCTTSRL_					0	0	0		ENST00000376673.7_1_13:98009748-98017404:+|nuORF	ENST00000376673.7_1_13:98009748-98017404:+|nuORF	ENST00000376673.7_1_13:98009748-98017404:+|nuORF	MSMS	A375_MHC_IP_R2	2	468.1715087890625	2	468.234384	934.454216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.958	1	76.699	76.199	77.199	0.74052								0	0	0	0.15486	1	28835	28835		11.64	0.52583	1				38236	11288	27972	28204	37286	37286					-0.015633358766990568
PASGLSKGE	9	Unmodified	_PASGLSKGE_					0	0	0		nc|ENSG00000151276|Q96QZ7|MAGI1;nc|ENSG00000151276|Q96QZ7-3|MAGI1;nc|ENSG00000151276|Q96QZ7-5|MAGI1	nc|ENSG00000151276|Q96QZ7|MAGI1	nc|ENSG00000151276|Q96QZ7|MAGI1	MULTI-MSMS	A375_MHC_IP_R2	2	846.5298461914062	1	845.436323	844.429047	-1.2437	-0.0010515	0.55899	0.00047259	-0.68473	-0.0005789	845.4367474878943	36.818	0.50803	37.589	37.308	37.816	0.7709					15	9	2	0	0	0	0.6898	1	13495	13495		7.9102	0	1	4058400			38237	14678	27973	28205	37287	37287					0.0006093259238468818
PASGSSIDWAY	11	Unmodified	_PASGSSIDWAY_					0	0	0		nc|ENSG00000128510|Q9UI42-2|CPA4;ENSG00000128510|ENST00000222482|CPA4	nc|ENSG00000128510|Q9UI42-2|CPA4	nc|ENSG00000128510|Q9UI42-2|CPA4	MULTI-MSMS	A375_MHC_IP_R1	1	576.653564453125	2	577.261653	1152.50875	0.35528	0.00020509	-0.6535	-0.00037724	-0.29822	-0.00017215	577.2612307870579	69.465	0.75926	69.465	69.224	69.983	0					36	14	4	0	0	0	0.72565	1	25205	25205		13.042	0	1	11790000			38238	4138	27974	28206	37288	37288					-0.061400455242846874
PASHCGWLQ	9	Unmodified	_PASHCGWLQ_					0	0	0			REV__ENSG00000145192|ENST00000411641|AHSG	REV__ENSG00000145192|ENST00000411641|AHSG	MSMS	A375_MHC_IP_R1	1	499.7054748535156	2	499.729269	997.443985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.888	1	59.888	59.388	60.388	0								0	0	0	0.1521	1	21552	21552		18.135	2.3668	1		+		38239	19462	27975	28207	37289	37289					-0.05483898811269228
PASLAAVYSYY	11	Unmodified	_PASLAAVYSYY_					0	0	0		nc|ENSG00000106624|Q8IUX7-2|AEBP1	nc|ENSG00000106624|Q8IUX7-2|AEBP1	nc|ENSG00000106624|Q8IUX7-2|AEBP1	MSMS	A375_MHC_IP_R2	2	603.2138671875	2	602.797872	1203.58119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.577	1	87.31	86.81	87.81	0.733								0	0	0	0.16166	1	32924	32924		10.074	3.3508	1				38240	14529	27976	28208	37290	37290					-0.012457114507014921
PASSVRVPV	9	Unmodified	_PASSVRVPV_					0	0	0			REV__ENST00000514612.5_1_3:134201706-134204799:-|nuORF	REV__ENST00000514612.5_1_3:134201706-134204799:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	456.6689758300781	2	456.269084	910.523616	-0.5019	-0.000229	0.25818	0.0001178	-0.24372	-0.0001112	456.26917083143576	41.687	0.41093	41.687	41.521	41.932	0					11	7	2	0	0	0	0.60917	1	14448	14448		13.906	0	1	1907500	+		38241	25610	27977	28209	37291	37291					0.06477491134376123
PATFNIKL	8	Unmodified	_PATFNIKL_					0	0	0			REV__ENSG00000198822|ENST00000361669|GRM3	REV__ENSG00000198822|ENST00000361669|GRM3	MSMS	A375_MHC_IP_R2	2	452.3326416015625	2	452.268553	902.522553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.7	1	136.81	136.31	137.31	0.11134								0	0	0	0.16876	1	53685	53685		2.5775	0	1		+		38242	22424	27978	28210	37292	37292					0.06739276765461
PATLSLALHAT	11	Unmodified	_PATLSLALHAT_					0	0	0			REV__ENST00000573536.1_1_17:3912086-3912350:-|nuORF	REV__ENST00000573536.1_1_17:3912086-3912350:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	366.2856140136719	3	365.544996	1093.61316	0.11817	4.3197E-05	0.69719	0.00025485	0.81536	0.00029805	365.5454010270214	27.358	0.40817	28.037	27.69	28.098	0.67857					11	7	2	0	0	0	0.84606	1	9266	9266		12.856	10.77	1	2828300	+		38243	26295	27979	28211	37293	37293					0.07009701023071102
PATPIFFIL	9	Unmodified	_PATPIFFIL_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	A375_MHC_IP_R2	2	510.2030029296875	2	509.802229	1017.5899	-0.71534	-0.00036468	2.1754	0.001109	1.46	0.00074432	509.80315996931324	124.9	0.30191	125.23	125.05	125.35	0.32969					7	5	2	0	0	0	0.72985	1	48564	48564		4.3292	0	1	17240000			38244	2647	27980	28212	37294	37294					0.08181306976428004
PATPMSGPPAA	11	Unmodified	_PATPMSGPPAA_					0	0	0			REV__ENSG00000197892|ENST00000524189|KIF13B	REV__ENSG00000197892|ENST00000524189|KIF13B	MSMS	A375_MHC_IP_R1	1	498.6524353027344	2	498.744585	995.474617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.185	1	69.185	68.685	69.685	0								0	0	0	0.16249	1	25101	25101		5.7319	0	1		+		38245	22327	27981	28213	37295	37295					-0.023301652168811415
PATRLFEAN	9	Unmodified	_PATRLFEAN_					0	0	0		nc|ENSG00000175894|Q8WU66-2|TSPEAR;ENSG00000175894|ENST00000323084|TSPEAR	nc|ENSG00000175894|Q8WU66-2|TSPEAR	nc|ENSG00000175894|Q8WU66-2|TSPEAR	MSMS	A375_MHC_IP_R1	1	509.6950988769531	2	509.769448	1017.52434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.158	1	24.158	23.658	24.658	0								0	0	0	0.1499	1	6784	6784		21.747	1.293	1				38246	7988	27982	28214	37296	37296					0.01628285783431238
PATTEPRPV	9	Unmodified	_PATTEPRPV_					0	0	0			REV__ENSG00000155629|ENST00000339364|PIK3AP1	REV__ENSG00000155629|ENST00000339364|PIK3AP1	MSMS	A375_MHC_IP_R1	1	484.1607360839844	2	484.263999	966.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.945	1	81.945	81.445	82.445	0								0	0	0	0.15283	1	29953	29953		16.942	2.104	1		+		38247	19930	27983	28215	37297	37297					0.028848834091377284
PATYVNSSI	9	Unmodified	_PATYVNSSI_					0	0	0			REV__ZSWIM5|p.D511N|1|0.42|ENSG00000162415|chr1:45043297-45043297|C/T|missense_variant	REV__ZSWIM5|p.D511N|1|0.42|ENSG00000162415|chr1:45043297-45043297|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	476.6422119140625	2	476.242732	950.470912	-0.67822	-0.000323	0.14239	6.7812E-05	-0.53583	-0.00025518	476.2426384455947	66.36	0.51027	67.096	66.831	67.342	0.73631					16	9	2	0	0	0	0.53367	1	25162	25162		18.146	2.2992	1	1205100	+		38248	29061	27984	28216	37298	37298					-0.006305117190890996
PATYVNSSI	9	Unmodified	_PATYVNSSI_					0	0	0			REV__ZSWIM5|p.D511N|1|0.42|ENSG00000162415|chr1:45043297-45043297|C/T|missense_variant	REV__ZSWIM5|p.D511N|1|0.42|ENSG00000162415|chr1:45043297-45043297|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	476.242732	950.470912	-0.84827	-0.00040398	0.23308	0.000111	-0.61519	-0.00029298	476.2429097512457	67.351	0.30621	67.351	67.194	67.5	0	0.12742	3.8602E-05	NaN	18.146	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	727810	+		38249	29061	27984	28216							-0.006305117190890996
PATYVNSSI	9	Unmodified	_PATYVNSSI_					0	0	0			REV__ZSWIM5|p.D511N|1|0.42|ENSG00000162415|chr1:45043297-45043297|C/T|missense_variant	REV__ZSWIM5|p.D511N|1|0.42|ENSG00000162415|chr1:45043297-45043297|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	476.242732	950.470912	-0.67822	-0.000323	0.14239	6.7812E-05	-0.53583	-0.00025518	476.2426384455947	66.36	0.51027	67.096	66.831	67.342	0.73631	-0.12742	-4.7775E-05	NaN	18.146	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1205100	+		38250	29061	27984	28216							-0.006305117190890996
PAVVSLPRPAG	11	Unmodified	_PAVVSLPRPAG_					0	0	0		ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	MULTI-MSMS	A375_MHC_IP_R1	1	355.4599609375	3	355.213469	1062.61858	-0.013675	-4.8577E-06	0.34846	0.00012378	0.33479	0.00011892	355.21367569011187	40.314	0.61139	40.314	39.948	40.559	0					17	11	3	0	0	0	0.73149	1	13788	13788		7.4771	0	1	3708100			38251	6979	27985	28217	37299	37299					0.0897742460556401
PAVWHRLE	8	Unmodified	_PAVWHRLE_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000527047.5_1_11:237004-244162:+|nuORF	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MSMS	A375_MHC_IP_R1	1	504.2467956542969	2	504.274701	1006.53485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.323	1	19.323	18.823	19.823	0								0	0	0	0.16876	1	4698	4698		10.183	1.5901	1				38252	8680	27986	28218	37300	37300					0.03184313228518931
PAWCCCCCCI	10	Unmodified	_PAWCCCCCCI_					0	0	0			REV__ENSG00000130054|ENST00000252338|NALF2	REV__ENSG00000130054|ENST00000252338|NALF2	MULTI-SECPEP	A375_MHC_IP_R1	1	368.26953125	3	368.780252	1103.31893	0.42046	0.00015506	1.0738	0.000396	1.4943	0.00055105	369.1152962482676	35.267	0.55994	35.267	35.013	35.573	0					29	10	4	0	0	0	0.95014	1	11685	11685		0.15932	0	1	2630900	+		38253	18516	27987	28219	37301	37301					-0.2286005792184369
PAWPWRKRRWS	11	Unmodified	_PAWPWRKRRWS_					0	0	0		INMT|p.Y204Lfs*68|1|0.37|ENSG00000241644|chr7:30755670-30755685|ACATGGTGGGGAAGCG/-|frameshift_variant	INMT|p.Y204Lfs*68|1|0.37|ENSG00000241644|chr7:30755670-30755685|ACATGGTGGGGAAGCG/-|frameshift_variant	INMT|p.Y204Lfs*68|1|0.37|ENSG00000241644|chr7:30755670-30755685|ACATGGTGGGGAAGCG/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	763.41796875	2	763.418011	1524.82147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.868	1	88.868	88.368	89.368	0								0	0	0	0.16331	1	32637	32637		1.4819	0.28856	1				38254	14166	27988	28220	37302	37302					0.08005167450664885
PAWTKKKKKK	10	Unmodified	_PAWTKKKKKK_					0	0	0			REV__AluJb_dup53617|chr8:11864197-11864505:+|1.1599310112494683|0.1824579183855656|2.67|471.0|8|3|sense	REV__AluJb_dup53617|chr8:11864197-11864505:+|1.1599310112494683|0.1824579183855656|2.67|471.0|8|3|sense	MSMS	A375_MHC_IP_R1	1	622.0748291015625	2	621.905882	1241.79721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.33	1	114.33	113.83	114.83	0								0	0	0	0.15435	1	41913	41913		6.7232	0.51738	1		+		38255	15360	27989	28221	37303	37303					0.1859851424444514
PAWWWRPWWS	10	Unmodified	_PAWWWRPWWS_					0	0	0			REV__ENST00000355943.7_1_5:110074744-110074849:+|nuORF	REV__ENST00000355943.7_1_5:110074744-110074849:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	486.987548828125	3	486.568247	1456.68291	-0.0015984	-7.7771E-07	-0.81431	-0.00039622	-0.81591	-0.00039699	486.5680105830033	21.464	0.60794	21.464	21.048	21.656	0					14	11	2	0	0	0	0.95014	1	5516	5516		0.15932	0	1	1088900	+		38256	23825	27990	28222	37304	37304					-0.027163755176388804
PAYLLLRYNER	11	Unmodified	_PAYLLLRYNER_					0	0	0		ENSG00000132801|ENST00000255152|ZSWIM3	ENSG00000132801|ENST00000255152|ZSWIM3	ENSG00000132801|ENST00000255152|ZSWIM3	MSMS	A375_MHC_IP_R1	1	704.392333984375	2	704.390793	1406.76703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.876	1	83.876	83.376	84.376	0								0	0	0	0.16302	1	30701	30701		2.9952	0	1				38257	4451	27991	28223	37305	37305					0.07992110788609352
PAYLRRRRRRR	11	Unmodified	_PAYLRRRRRRR_					0	0	0			REV__ENST00000554273.1_1_14:50998823-50999316:-|nuORF	REV__ENST00000554273.1_1_14:50998823-50999316:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1181640625	3	519.325814	1554.95561	-0.50158	-0.00026048	-2.2019	-0.0011435	-2.7035	-0.001404	519.659360822648	83.243	0.25557	83.243	83.125	83.38	0					5	4	2	0	0	0	1.0014	1	30468	30468		0.50596	0.051438	1	1335700	+		38258	26077	27992	28224	37306	37306					0.20033245996069127
PCAANGPS	8	Unmodified	_PCAANGPS_					0	0	0			REV__ENST00000296350.9_1_3:196729451-196730141:-|nuORF	REV__ENST00000296350.9_1_3:196729451-196730141:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	716.8539428710938	1	716.3032	715.295924	-0.56931	-0.0004078	-0.88951	-0.00063716	-1.4588	-0.001045	716.3024419099036	144.33	0.19052	144.35	144.27	144.46	0.024414					6	3	2	0	0	0	0.972	1	56395	56395		0.79363	0	1	580450	+		38259	23387	27993	28225	37307	37307					-0.07311210065120122
PCAGYQTKNYS	11	Unmodified	_PCAGYQTKNYS_					0	0	0		ENST00000564781.1_1_16:68057459-68071937:+|nuORF	ENST00000564781.1_1_16:68057459-68071937:+|nuORF	ENST00000564781.1_1_16:68057459-68071937:+|nuORF	MSMS	A375_MHC_IP_R1	1	616.1981201171875	2	616.274238	1230.53392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.885	1	69.885	69.385	70.385	0								0	0	0	0.1534	1	25365	25365		18.373	1.4308	1				38260	13541	27994	28226	37308	37308					-0.07212313993341013
PCCCCYCC	8	Unmodified	_PCCCCYCC_					0	0	0		ENST00000220931.10_1_8:102803112-102803181:-|nuORF	ENST00000220931.10_1_8:102803112-102803181:-|nuORF	ENST00000220931.10_1_8:102803112-102803181:-|nuORF	MSMS	A375_MHC_IP_R2	2	448.9639892578125	2	449.098158	896.181764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.886	1	35.649	35.149	36.149	0.76338								0	0	0	0.16876	1	12619	12619		0	0	1				38261	10107	27995	28227	37309	37309					-0.2704796680139907
PCCCRDPCCC	10	Unmodified	_PCCCRDPCCC_					0	0	0		ENSG00000214518|ENST00000398477|KRTAP2-2;ENSG00000213417|ENST00000394015|KRTAP2-4;ENSG00000212725|ENST00000391419|KRTAP2-1;ENSG00000212724|ENST00000391418|KRTAP2-3;CON__Q9BYR9	ENSG00000214518|ENST00000398477|KRTAP2-2	ENSG00000214518|ENST00000398477|KRTAP2-2	MSMS	A375_MHC_IP_R2	2	367.7932434082031	3	368.107028	1101.29925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.483	1	17.079	16.579	17.579	0.59616								0	0	0	0.15642	1	4881	4881		0	0	1			+	38262	631	27996	28228	37310	37310					-0.2473443393259913
PCCCSDPCCPC	11	Unmodified	_PCCCSDPCCPC_					0	0	0			REV__ENSG00000143195|ENST00000271417|ILDR2	REV__ENSG00000143195|ENST00000271417|ILDR2	MSMS	A375_MHC_IP_R2	2	565.6830444335938	2	565.648744	1129.28293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.83	1	106.59	106.09	107.09	0.75977								0	0	0	0.1636	1	40018	40018		0	0	1		+		38263	19339	27997	28229	37311	37311					-0.27653559889358803
PCDFRSSF	8	Unmodified	_PCDFRSSF_					0	0	0		IRS1|p.V445I|1|0.27|ENSG00000169047|chr2:226797406-226797406|C/T|missense_variant;IRS1|p.E1052Rfs*29|1|0.11|ENSG00000169047|chr2:226795585-226795586|-/T|frameshift_variant;ENSG00000169047|ENST00000305123|IRS1	IRS1|p.V445I|1|0.27|ENSG00000169047|chr2:226797406-226797406|C/T|missense_variant	IRS1|p.V445I|1|0.27|ENSG00000169047|chr2:226797406-226797406|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	479.49346923828125	2	479.708002	957.401452	-0.262	-0.00012568	1.0751	0.00051572	0.81307	0.00039004	479.70863173770675	82.324	0.7114	82.324	82.011	82.722	0					19	13	2	0	0	0	0.76248	1	30045	30045		16.942	3.4344	1	1461300			38264	7375	27998	28230	37312	37312					-0.07895293939486692
PCGSCYYY	8	Unmodified	_PCGSCYYY_					0	0	0		ENST00000454028.5_1_3:37035144-37045944:+|nuORF;ENST00000435176.5_1_3:37035370-37045944:+|nuORF	ENST00000454028.5_1_3:37035144-37045944:+|nuORF	ENST00000454028.5_1_3:37035144-37045944:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	478.1058044433594	2	478.169864	954.325175	-0.80916	-0.00038692	0.93481	0.000447	0.12565	6.0083E-05	478.17012106471213	38.837	0.51257	39.611	39.401	39.914	0.77451					18	9	3	0	0	0	0.77781	1	14375	14375		2.8892	2.8892	1	2742400			38265	11906	27999	28231	37313	37313					-0.15381433831157665
PCGSCYYY	8	Unmodified	_PCGSCYYY_					0	0	0		ENST00000454028.5_1_3:37035144-37045944:+|nuORF;ENST00000435176.5_1_3:37035370-37045944:+|nuORF	ENST00000454028.5_1_3:37035144-37045944:+|nuORF	ENST00000454028.5_1_3:37035144-37045944:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	478.169864	954.325175	-0.63129	-0.00030186	1.0107	0.00048328	0.37939	0.00018141	478.17011532778423	39.583	0.50487	39.583	39.34	39.845	0	-0.013969	4.0462E-05	NaN	2.8892	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2536700			38266	11906	27999	28231							-0.15381433831157665
PCLSPPQGQGS	11	Unmodified	_PCLSPPQGQGS_					0	0	0		ENST00000507952.1_1_10:75490478-75490948:+|nuORF	ENST00000507952.1_1_10:75490478-75490948:+|nuORF	ENST00000507952.1_1_10:75490478-75490948:+|nuORF	MSMS	A375_MHC_IP_R1	1	535.6652221679688	2	535.750398	1069.48624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.291	1	93.291	92.791	93.791	0								0	0	0	0.16152	1	34292	34292		10.8	2.8894	1				38267	12869	28000	28232	37314	37314					-0.0457196819352248
PCRIYCCCY	9	Unmodified	_PCRIYCCCY_					0	0	0			REV__nc|ENSG00000145103|Q86SU0-3|ILDR1	REV__nc|ENSG00000145103|Q86SU0-3|ILDR1	MULTI-SECPEP	A375_MHC_IP_R2	2	562.6124877929688	2	562.213226	1122.4119	-0.651	-0.000366	-0.34024	-0.00019129	-0.99125	-0.00055729	562.2130113613345	72.727	0.55947	73.462	73.175	73.734	0.7354					20	10	3	0	0	0	0.69504	1	27645	27645		18.135	8.0611	1	2047500	+		38268	19460	28001	28233	37315	37315					-0.14441093872596866
PCRKLPDTL	9	Unmodified	_PCRKLPDTL_					0	0	0			REV__MED15|p.S577L|2|0.22|ENSG00000099917|chr22:20583387-20583387|C/T|missense_variant	REV__MED15|p.S577L|2|0.22|ENSG00000099917|chr22:20583387-20583387|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	521.8786010742188	2	521.789327	1041.5641	-0.47351	-0.00024707	1.5434	0.00080535	1.0699	0.00055828	522.2910997161089	103.9	1.7299	103.9	102.86	104.59	0					46	33	2	0	0	0	0.69674	1	38281	38281		7.2892	1.0834	1	2091600	+		38269	27003	28002	28234	37316	37316					0.04498089462481403
PCRPILQL	8	Unmodified	_PCRPILQL_					0	0	0			REV__ENSG00000187741|ENST00000389301|FANCA	REV__ENSG00000187741|ENST00000389301|FANCA	MSMS	A375_MHC_IP_R2	2	470.2054748535156	2	470.275855	938.537157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.24	1	111.97	111.47	112.47	0.73692								0	0	0	0.16876	1	41946	41946		9.3474	3.587	1		+		38270	22042	28003	28235	37317	37317					0.0654302564196314
PCRRELAQ	8	Unmodified	_PCRRELAQ_					0	0	0			REV__ENST00000552365.1_1_12:53874968-53878035:-|nuORF	REV__ENST00000552365.1_1_12:53874968-53878035:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	487.17095947265625	2	486.755818	971.497083	-0.89436	-0.00043534	-0.1987	-9.672E-05	-1.0931	-0.00053206	486.7554488405458	61.791	0.40428	62.534	62.319	62.724	0.74263					12	7	2	0	0	0	0.7338	1	23429	23429		24.674	1.9376	1	1161600	+		38271	19168	28004	28236	37318	37318					0.010194789713864338
PCTLHRGRE	9	Unmodified	_PCTLHRGRE_					0	0	0		ENST00000326043.4_1_16:79634342-79634441:-|nuORF	ENST00000326043.4_1_16:79634342-79634441:-|nuORF	ENST00000326043.4_1_16:79634342-79634441:-|nuORF	MSMS	A375_MHC_IP_R1	1	534.6900634765625	2	534.772	1067.52945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.412	1	32.412	31.912	32.912	0								0	0	0	0.15142	1	10470	10470		19.257	3.4098	1				38272	10728	28005	28237	37319	37319					-0.0016173362560039095
PCTSFNLKDP	10	Unmodified	_PCTSFNLKDP_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MSMS	A375_MHC_IP_R2	2	374.4331970214844	3	374.514708	1120.5223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.779	1	37.55	37.05	38.05	0.7709								0	0	0	0.15465	1	13426	13426		3.0723	0.81953	1		+		38273	20029	28006	28238	37320	37320					-0.033145110167197345
PCVLGRSRAL	10	Unmodified	_PCVLGRSRAL_					0	0	0			REV__ENST00000293217.9_3_17:73975210-73975420:-|nuORF	REV__ENST00000293217.9_3_17:73975210-73975420:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	357.9308776855469	3	357.874571	1070.60188	-0.072571	-2.5971E-05	-0.86724	-0.00031036	-0.93981	-0.00033634	357.8732654306303	46.485	0.25682	47.25	47.108	47.364	0.76518					9	4	3	0	0	0	0.93404	1	17410	17410		0.15932	0	1	565700	+		38274	23371	28007	28239	37321	37321					0.06940600447956058
PDAFMREEL	9	Unmodified	_PDAFMREEL_					0	0	0		nc|ENSG00000292354|O15266-2|SHOX;ENSG00000185960|ENST00000686671|SHOX;ENSG00000168779|ENST00000483851|SHOX2;nc|ENSG00000168779|O60902|SHOX2;nc|ENSG00000168779|O60902-3|SHOX2	nc|ENSG00000292354|O15266-2|SHOX	nc|ENSG00000292354|O15266-2|SHOX	MULTI-SECPEP	A375_MHC_IP_R2	2	369.58892822265625	3	369.842825	1106.50665	0.024622	9.1062E-06	0.49693	0.00018378	0.52155	0.00019289	369.8430397965681	23.576	0.55769	24.206	23.979	24.537	0.63014					17	10	3	0	0	0	0.80005	1	7554	7554		0.23584	0	1	2443900			38275	7342	28008	28240	37322	37322					-0.04234797533717938
PDAIVDELTL	10	Unmodified	_PDAIVDELTL_					0	0	0			REV__nc|ENSG00000114805|Q4KWH8-2|PLCH1	REV__nc|ENSG00000114805|Q4KWH8-2|PLCH1	MULTI-SECPEP	A375_MHC_IP_R1	1	543.1870727539062	2	543.289879	1084.56521	-0.64978	-0.00035302	-1.3567	-0.0007371	-2.0065	-0.0010901	543.2893760080857	53.34	0.6585	53.34	52.897	53.555	0					19	12	2	0	0	0	0.91442	1	18983	18983		16.149	9.9433	1	5352200	+		38276	17842	28009	28241	37323	37323					0.026305823123948358
PDALHFSRSW	10	Unmodified	_PDALHFSRSW_					0	0	0			REV__ENSG00000205108|ENST00000378788|FAM205A	REV__ENSG00000205108|ENST00000378788|FAM205A	MSMS	A375_MHC_IP_R2	2	405.934814453125	3	405.868362	1214.58326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.789	1	30.488	29.988	30.988	0.69872								0	0	0	0.14925	1	10430	10430		12.175	7.1272	1		+		38277	22557	28010	28242	37324	37324					-0.015452379222324453
PDASLPAW	8	Unmodified	_PDASLPAW_					0	0	0			REV__ENST00000441188.2_1_X:92477682-92478501:-|nuORF	REV__ENST00000441188.2_1_X:92477682-92478501:-|nuORF	MSMS	A375_MHC_IP_R1	1	428.6434326171875	2	428.713611	855.412668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.35	1	106.35	105.85	106.85	0								0	0	0	0.16876	1	39039	39039		26.341	0.94196	1		+		38278	24805	28011	28243	37325	37325					-0.02082148573720133
PDAWSPLCLF	10	Unmodified	_PDAWSPLCLF_					0	0	0			REV__ENST00000377893.2_1_1:6308175-6308463:-|nuORF	REV__ENST00000377893.2_1_1:6308175-6308463:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	384.2864990234375	3	383.519682	1147.53722	-0.37013	-0.00014195	-3.4445	-0.001321	-3.8146	-0.001463	383.5190262705714	34.408	0.20541	35.16	35.006	35.211	0.75225					5	3	2	0	0	0	0.91556	1	12425	12425		3.3196	0	1	464370	+		38279	24168	28012	28244	37326	37326					-0.030650191487211487
PDCCCDVGCDS	11	Unmodified	_PDCCCDVGCDS_					0	0	0			REV__ENSG00000090889|ENST00000374403|KIF4A	REV__ENSG00000090889|ENST00000374403|KIF4A	MSMS	A375_MHC_IP_R2	2	558.6952514648438	2	558.658677	1115.3028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.565	1	92.299	91.799	92.799	0.7345								0	0	0	0.16334	1	34828	34828		1.3295	1.3295	1		+		38280	16934	28013	28245	37327	37327					-0.25023769353379066
PDCDITFIPW	10	Unmodified	_PDCDITFIPW_					0	0	0		ENST00000552656.5_1_12:56610319-56615704:-|nuORF;ENST00000345093.8_1_12:56610319-56615573:-|nuORF	ENST00000552656.5_1_12:56610319-56615704:-|nuORF	ENST00000552656.5_1_12:56610319-56615704:-|nuORF	MSMS	A375_MHC_IP_R1	1	402.9214172363281	3	402.854842	1205.5427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.819	1	37.819	37.319	38.319	0								0	0	0	0.15531	1	12776	12776		1.7423	0.41263	1				38281	10901	28014	28246	37328	37328					-0.05185340356911183
PDCGDSHDCDC	11	Unmodified	_PDCGDSHDCDC_					0	0	0			REV__ENST00000469390.5_1_1:156877911-156884587:+|nuORF	REV__ENST00000469390.5_1_1:156877911-156884587:+|nuORF	MSMS	A375_MHC_IP_R1	1	583.630126953125	2	583.662806	1165.31106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.17	1	111.17	110.67	111.67	0								0	0	0	0.16334	1	40756	40756		1.3295	0	1		+		38282	22049	28015	28247	37329	37329					-0.26498499112403806
PDCQWMYGYT	10	Unmodified	_PDCQWMYGYT_					0	0	0			REV__ENST00000262510.10_2_16:57116485-57116767:+|nuORF	REV__ENST00000262510.10_2_16:57116485-57116767:+|nuORF	MSMS	A375_MHC_IP_R1	1	422.23297119140625	3	421.83182	1262.47363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.284	1	14.284	13.784	14.784	0								0	0	0	0.15628	1	3273	3273		0.15932	0.064481	1		+		38283	23208	28016	28248	37330	37330					-0.14710747648109646
PDCRLGALGR	10	Unmodified	_PDCRLGALGR_					0	0	0			REV__ENSG00000183723|ENST00000394106|CMTM4	REV__ENSG00000183723|ENST00000394106|CMTM4	MSMS	A375_MHC_IP_R1	1	353.59228515625	3	353.190559	1056.54985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.773	1	71.773	71.273	72.273	0								0	0	0	0.15451	1	26091	26091		3.3196	0.24738	1		+		38284	21772	28017	28249	37331	37331					0.02383437034200142
PDCSPFSPQII	11	Unmodified	_PDCSPFSPQII_					0	0	0			REV__ENSG00000103064|ENST00000219343|SLC7A6	REV__ENSG00000103064|ENST00000219343|SLC7A6	MULTI-SECPEP	A375_MHC_IP_R1	1	402.6083068847656	3	401.861996	1202.56416	-0.56576	-0.00022736	-0.21878	-8.7921E-05	-0.78454	-0.00031528	402.19620560198086	29.022	0.30272	29.022	28.795	29.098	0					7	5	2	0	0	0	0.99945	1	8949	8949		4.1166	3.9938	1	693620	+		38285	17250	28018	28250	37332	37332					-0.029019553281614208
PDCTDEHC	8	Unmodified	_PDCTDEHC_					0	0	0			REV__ENSG00000244486|ENST00000622235|SCARF2	REV__ENSG00000244486|ENST00000622235|SCARF2	MULTI-MSMS	A375_MHC_IP_R1	1	919.6923828125	1	919.292043	918.284767	-0.19428	-0.0001786	1.894	0.0017412	1.6998	0.0015626	919.2927057412236	129.17	0.15303	129.17	129.09	129.25	0					4	2	2	0	0	0	0.7779	1	49684	49684		2.5775	0	1	4379900	+		38286	22823	28019	28251	37333	37333					-0.17764400221574306
PDDEHEML	8	Unmodified	_PDDEHEML_					0	0	0			REV__ENST00000531625.1_1_11:62445958-62446247:-|nuORF	REV__ENST00000531625.1_1_11:62445958-62446247:-|nuORF	MSMS	A375_MHC_IP_R2	2	493.14825439453125	2	493.200207	984.385861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.169	1	86.902	86.402	87.402	0.733								0	0	0	0.16876	1	32768	32768		9.3474	0	1		+		38287	20238	28020	28252	37334	37334					-0.10695625247205953
PDDFDCSDSC	10	Unmodified	_PDDFDCSDSC_					0	0	0			REV__nc|ENSG00000132932|Q9NTI2-3|ATP8A2	REV__nc|ENSG00000132932|Q9NTI2-3|ATP8A2	MSMS	A375_MHC_IP_R2	2	368.45513916015625	3	368.447923	1102.32194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.176	1	27.855	27.355	28.355	0.67857								0	0	0	0.1562	1	9255	9255		0.69767	0.42865	1		+		38288	18692	28021	28253	37335	37335					-0.22512773466451108
PDDKIASDAAF	11	Unmodified	_PDDKIASDAAF_					0	0	0		MROH9|p.S278F|1|0.33|ENSG00000117501|chr1:170986664-170986664|C/T|missense_variant	MROH9|p.S278F|1|0.33|ENSG00000117501|chr1:170986664-170986664|C/T|missense_variant	MROH9|p.S278F|1|0.33|ENSG00000117501|chr1:170986664-170986664|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	384.2864990234375	3	383.852266	1148.53497	-0.13645	-5.2377E-05	0.21347	8.1941E-05	0.077018	2.9564E-05	383.85207055140256	32.321	0.30493	33.058	32.857	33.162	0.73691					8	5	2	0	0	0	0.9836	1	11425	11425		9.2438	0.26753	1	1264500			38289	14405	28022	28254	37336	37336					-0.033357763528101714
PDDLDAFVRF	10	Unmodified	_PDDLDAFVRF_					0	0	0		nc|ENSG00000154222|Q5T0F9-3|CC2D1B;ENSG00000154222|ENST00000284376|CC2D1B;nc|ENSG00000154222|Q5T0F9|CC2D1B;nc|ENSG00000154222|Q5T0F9-4|CC2D1B;ENST00000491136.6_1_1:52820057-52823576:-|nuORF;ENST00000460370.1_1_1:52821267-52821336:-|nuORF	nc|ENSG00000154222|Q5T0F9-3|CC2D1B	nc|ENSG00000154222|Q5T0F9-3|CC2D1B	MULTI-SECPEP	A375_MHC_IP_R1	1	398.2642822265625	3	398.864506	1193.57169	0.033454	1.3344E-05	4.0585	0.0016188	4.092	0.0016322	398.86642071024903	21.326	0.30583	21.326	21.148	21.454	0					7	5	2	0	0	0	0.9269	1	5594	5594		1.7423	0	1	1916800			38290	6070	28023	28255	37337	37337					-0.01735479736248635
PDDLIIHAVL	10	Unmodified	_PDDLIIHAVL_					0	0	0		chr8:144079406-144079943|307|10.37|0.18|5.87|+|1|TE_info:L2a,L2a_dup89164,L2,LINE,donor,+,144079155,144079406|None,EXOSC4|1	chr8:144079406-144079943|307|10.37|0.18|5.87|+|1|TE_info:L2a,L2a_dup89164,L2,LINE,donor,+,144079155,144079406|None,EXOSC4|1	chr8:144079406-144079943|307|10.37|0.18|5.87|+|1|TE_info:L2a,L2a_dup89164,L2,LINE,donor,+,144079155,144079406|None,EXOSC4|1	MULTI-SECPEP	A375_MHC_IP_R1	1	553.696533203125	2	553.316232	1104.61791	-0.81738	-0.00045227	-2.2716	-0.0012569	-3.089	-0.0017092	553.3162777646236	134.07	0.20461	134.07	133.91	134.12	0					5	3	2	0	0	0	0.87163	1	51719	51719		13.906	5.9959	1	958610			38291	506	28024	28256	37338	37338					0.06978585165848017
PDDMKERYR	9	Unmodified	_PDDMKERYR_					0	0	0		nc|ENSG00000108799|Q92800-2|EZH1;ENSG00000108799|ENST00000428826|EZH1;nc|ENSG00000108799|Q92800-3|EZH1;nc|ENSG00000108799|Q92800-5|EZH1;ENST00000586103.5_1_17:40855746-40880959:-|nuORF;nc|ENSG00000108799|Q92800-4|EZH1;ENST00000591330.5_1_17:40855746-40879722:-|nuORF;ENST00000585912.5_1_17:40855746-40880959:-|nuORF;ENST00000593148.1_1_17:40870451-40871187:-|nuORF	nc|ENSG00000108799|Q92800-2|EZH1	nc|ENSG00000108799|Q92800-2|EZH1	MSMS	A375_MHC_IP_R2	2	403.70538330078125	3	403.860878	1208.56081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.934	1	23.564	23.064	24.064	0.63014								0	0	0	0.15486	1	7316	7316		2.4985	0	1				38292	2839	28025	28257	37339	37339					-0.035132053821598674
PDDTSGVM	8	Unmodified	_PDDTSGVM_					0	0	0			REV__ENST00000474939.1_1_1:146638515-146644062:-|nuORF	REV__ENST00000474939.1_1_1:146638515-146644062:-|nuORF	MSMS	A375_MHC_IP_R2	2	411.1308288574219	2	411.170918	820.327284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.129	1	21.748	21.248	22.248	0.61932								0	0	0	0.16876	1	6630	6630		9.3474	0	1		+		38293	18621	28026	28258	37340	37340					-0.0900668182167692
PDDTYVVYEVF	11	Unmodified	_PDDTYVVYEVF_					0	0	0			REV__nc|ENSG00000015532|Q9H1B5-2|XYLT2	REV__nc|ENSG00000015532|Q9H1B5-2|XYLT2	MULTI-SECPEP	A375_MHC_IP_R2	2	450.27703857421875	3	449.543209	1345.6078	-0.62618	-0.00028149	-0.61076	-0.00027456	-1.2369	-0.00055606	449.8773160895389	23.221	0.40621	23.851	23.623	24.029	0.63015					10	7	2	0	0	0	0.99246	1	7464	7464		10.899	1.9227	1	9362500	+		38294	16248	28027	28259	37341	37341					-0.05118067350053934
PDEDGYDDEY	10	Unmodified	_PDEDGYDDEY_					0	0	0		ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	MSMS	A375_MHC_IP_R1	1	608.919677734375	2	609.20948	1216.40441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.93	1	81.93	81.43	82.43	0								0	0	0	0.15596	1	29948	29948		1.4819	0.15237	1				38295	6319	28028	28260	37342	37342					-0.19513836862302014
PDEEKMVKERK	11	Unmodified	_PDEEKMVKERK_					0	0	0		ENSG00000163617|ENST00000295878|CCDC191;nc|ENSG00000163617|Q8NCU4-2|CCDC191;ENST00000460813.5_1_3:113723412-113755878:-|nuORF	ENSG00000163617|ENST00000295878|CCDC191	ENSG00000163617|ENST00000295878|CCDC191	MULTI-MSMS	A375_MHC_IP_R2	2	463.6201477050781	3	463.57826	1387.71295	-0.89858	-0.00041656	0.29062	0.00013473	-0.60796	-0.00028184	463.91262028228186	21.006	0.55734	21.621	21.266	21.823	0.61485					15	10	2	0	0	0	0.72713	1	6589	6589		11.631	2.8796	1	1092200			38296	6692	28029	28261	37343	37343					0.034601505747104966
PDEFDVHFLGF	11	Unmodified	_PDEFDVHFLGF_					0	0	0			REV__nc|ENSG00000249948|Q9H227-2|GBA3	REV__nc|ENSG00000249948|Q9H227-2|GBA3	MULTI-MSMS	A375_MHC_IP_R1	1	441.6253662109375	3	441.539911	1321.5979	-0.15439	-6.817E-05	-3.0872	-0.0013631	-3.2416	-0.0014313	441.53834415852793	19.755	0.30584	19.755	19.623	19.928	0					8	5	2	0	0	0	0.73472	1	4978	4978		4.4062	0.56024	1	978690	+		38297	27528	28030	28262	37344	37344					-0.05003210564791516
PDEFDVHFLGF	11	Unmodified	_PDEFDVHFLGF_					0	0	0			REV__nc|ENSG00000249948|Q9H227-2|GBA3	REV__nc|ENSG00000249948|Q9H227-2|GBA3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	441.539911	1321.5979	-0.15439	-6.817E-05	-3.0872	-0.0013631	-3.2416	-0.0014313	441.53834415852793	19.755	0.30584	19.755	19.623	19.928	0	0.065118	4.7681E-05	NaN	4.4062	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	978690	+		38298	27528	28030	28262							-0.05003210564791516
PDEFDVHFLGF	11	Unmodified	_PDEFDVHFLGF_					0	0	0			REV__nc|ENSG00000249948|Q9H227-2|GBA3	REV__nc|ENSG00000249948|Q9H227-2|GBA3	MULTI-MATCH	A375_MHC_IP_R2	2		3	441.539911	1321.5979	-0.61058	-0.00026959	-3.1429	-0.0013877	-3.7535	-0.0016573	441.8728404688129	19.022	0.19953	19.625	19.483	19.683	0.60308	-0.065118	-2.6039E-05	NaN	4.4062	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2729400	+		38299	27528	28030	28262							-0.05003210564791516
PDEHRAPCFL	10	Unmodified	_PDEHRAPCFL_					0	0	0			REV__ENST00000306801.7_1_17:78899237-78923276:+|nuORF	REV__ENST00000306801.7_1_17:78899237-78923276:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	395.13482666015625	3	395.522086	1183.54443	-0.26547	-0.000105	3.2487	0.001285	2.9833	0.00118	395.52333221502295	32.759	0.4045	32.759	32.585	32.989	0					9	7	2	0	0	0	0.93406	1	10593	10593		6.1918	0.40842	1	1148700	+		38300	23472	28031	28263	37345	37345					-0.04000286548262011
PDEIWVETV	9	Unmodified	_PDEIWVETV_					0	0	0			REV__ENST00000464685.1_1_2:99787951-99788122:-|nuORF	REV__ENST00000464685.1_1_2:99787951-99788122:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	363.62872314453125	3	363.181723	1086.52334	-0.3662	-0.000133	-1.9968	-0.0007252	-2.363	-0.0008582	363.18056809046954	19.155	0.30101	19.758	19.583	19.884	0.60308					9	5	2	0	0	0	0.69381	1	5876	5876		20.415	0	1	2293100	+		38301	20072	28032	28264	37346	37346					-0.016459733761621465
PDEQGFPKAEE	11	Unmodified	_PDEQGFPKAEE_					0	0	0		ANK3|p.G2656E|1|0.12|ENSG00000151150|chr10:60072914-60072914|C/T|missense_variant	ANK3|p.G2656E|1|0.12|ENSG00000151150|chr10:60072914-60072914|C/T|missense_variant	ANK3|p.G2656E|1|0.12|ENSG00000151150|chr10:60072914-60072914|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	624.1817016601562	2	623.78295	1245.55135	-0.46833	-0.00029214	-0.86309	-0.00053838	-1.3314	-0.00083052	623.7823101431743	57.359	0.50949	57.359	57.059	57.568	0					12	9	2	0	0	0	0.98524	1	20643	20643		7.1017	0	1	2240700			38302	137	28033	28265	37347	37347					-0.061606951866906456
PDERESGLLGY	11	Unmodified	_PDERESGLLGY_					0	0	0		ENSG00000132680|ENST00000368321|KHDC4;nc|ENSG00000132680|Q7Z7F0-2|KHDC4;ENST00000478002.5_1_1:155885750-155895538:-|nuORF	ENSG00000132680|ENST00000368321|KHDC4	ENSG00000132680|ENST00000368321|KHDC4	MULTI-MSMS	A375_MHC_IP_R2	2	619.2252807617188	2	618.298767	1234.58298	-0.52567	-0.00032502	-0.37625	-0.00023263	-0.90191	-0.00055765	618.2987000393617	95.619	0.40722	96.369	96.093	96.5	0.75044					13	7	3	0	0	0	0.72798	1	36238	36238		10.824	1.4408	1	971610			38303	4439	28034	28266	37348	37348					-0.024927024327553227
PDEVKPRLI	9	Unmodified	_PDEVKPRLI_					0	0	0			REV__nc|ENSG00000138639|Q8N264-3|ARHGAP24	REV__nc|ENSG00000138639|Q8N264-3|ARHGAP24	MULTI-SECPEP	A375_MHC_IP_R1	1	1065.8472900390625	1	1066.62552	1065.61824	0.12096	0.00012902	-4.098	-0.004371	-3.977	-0.004242	1067.62564927982	128.9	0.50876	128.9	128.48	128.99	0					12	9	2	0	0	0	0.76187	1	49556	49556		7.2892	3.3448	1	6100800	+		38304	19105	28035	28267	37349	37349					0.08806004885695984
PDFALPFHF	9	Unmodified	_PDFALPFHF_					0	0	0			REV__ENST00000481304.5_1_X:153668486-153668693:+|nuORF	REV__ENST00000481304.5_1_X:153668486-153668693:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	364.2552185058594	3	364.183399	1089.52837	0.025464	9.2736E-06	-0.86409	-0.00031469	-0.83862	-0.00030541	364.18299710606686	27.709	0.45401	27.709	27.634	28.088	0					14	8	2	0	0	0	0.67539	1	8612	8612		11.495	2.1116	1	2827900	+		38305	25258	28036	28268	37350	37350					-0.01281624722878405
PDFCCGTCDD	10	Unmodified	_PDFCCGTCDD_					0	0	0		nc|ENSG00000164054|Q8N114-2|SHISA5;nc|ENSG00000164054|Q8N114-5|SHISA5;ENSG00000164054|ENST00000296444|SHISA5	nc|ENSG00000164054|Q8N114-2|SHISA5	nc|ENSG00000164054|Q8N114-2|SHISA5	MSMS	A375_MHC_IP_R1	1	538.182373046875	2	538.16191	1074.30927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.727	1	59.727	59.227	60.227	0								0	0	0	0.15591	1	21489	21489		1.6526	0	1				38306	6765	28037	28269	37351	37351					-0.22491508130337934
PDFFPRPNTT	10	Unmodified	_PDFFPRPNTT_					0	0	0		ENST00000468462.1_1_10:74994935-75000774:+|nuORF;ENST00000470798.5_1_10:74987874-74995082:+|nuORF;ENST00000475829.5_1_10:74992725-74995082:+|nuORF;nc|ENSG00000138286|Q96BN6-2|FAM149B1;ENSG00000138286|ENST00000242505|FAM149B1	ENST00000468462.1_1_10:74994935-75000774:+|nuORF	ENST00000468462.1_1_10:74994935-75000774:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	398.2642822265625	3	397.864617	1190.57202	0.082024	3.2634E-05	-0.61323	-0.00024398	-0.5312	-0.00021135	397.8644240393982	21.372	0.55771	21.372	21.048	21.606	0					24	10	3	0	0	0	0.94044	1	5594	5594		3.8763	0	1	21690000			38307	4975	28038	28270	37352	37352					-0.015640600163806084
PDFRKWVQFF	10	Unmodified	_PDFRKWVQFF_					0	0	0			REV__ENST00000424326.5_1_2:167262092-167297919:-|nuORF	REV__ENST00000424326.5_1_2:167262092-167297919:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	457.65264892578125	3	457.239907	1368.69789	-0.5773	-0.00026396	-0.10611	-4.8517E-05	-0.68341	-0.00031248	457.24001587366456	23.496	0.35381	24.126	23.979	24.333	0.63014					9	6	2	0	0	0	0.93578	1	7526	7526		3.3196	0	1	3850200	+		38308	24624	28039	28271	37353	37353					0.028290715596767768
PDFVLQYLF	9	Unmodified	_PDFVLQYLF_					0	0	0			REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	MULTI-MSMS	A375_MHC_IP_R2	2	381.5888977050781	3	381.202459	1140.58555	-0.45864	-0.00017484	-0.5421	-0.00020665	-1.0007	-0.00038148	381.202179689602	25.118	0.40853	25.762	25.568	25.976	0.64368					11	7	2	0	0	0	0.58047	1	8313	8313		10.8	1.8233	1	1531400	+		38309	21280	28040	28272	37354	37354					0.020877977628288136
PDFYKTKIK	9	Unmodified	_PDFYKTKIK_					0	0	0		ENSG00000168811|ENST00000699704|IL12A;ENST00000468862.5_1_3:159711454-159713343:+|nuORF	ENSG00000168811|ENST00000699704|IL12A	ENSG00000168811|ENST00000699704|IL12A	MULTI-SECPEP	A375_MHC_IP_R1	1	380.91400146484375	3	380.553492	1138.63865	0.52185	0.00019859	-0.25847	-9.8361E-05	0.26338	0.00010023	380.5534593823969	45.709	0.40669	45.709	45.534	45.941	0					14	7	2	0	0	0	0.79429	1	15986	15986		7.1017	7.1017	1	1356100			38310	7348	28041	28273	37355	37355					0.07487175545497848
PDGHSSLLFF	10	Unmodified	_PDGHSSLLFF_					0	0	0			REV__ENST00000332438.4_1_17:40831559-40832345:-|nuORF	REV__ENST00000332438.4_1_17:40831559-40832345:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	559.6978759765625	2	560.277106	1118.53966	-1.1581	-0.00064883	-4.3521	-0.0024384	-5.5102	-0.0030872	560.2746558300969	33.8	0.35316	34.553	34.45	34.803	0.75225					9	6	2	0	0	0	0.92389	1	12232	12232		7.2892	3.6927	1	740060	+		38311	23636	28042	28274	37356	37356					-0.014868474193690417
PDGISIPELRE	11	Unmodified	_PDGISIPELRE_					0	0	0		ENST00000525661.5_1_11:13427176-13461653:-|nuORF;ENST00000525864.5_1_11:13427176-13484721:-|nuORF;ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10	ENST00000525661.5_1_11:13427176-13461653:-|nuORF	ENST00000525661.5_1_11:13427176-13461653:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	408.9634704589844	3	409.218949	1224.63502	-0.36835	-0.00015074	1.0733	0.0004392	0.70491	0.00028846	409.219269180083	26.486	0.30464	27.146	26.957	27.262	0.65992					11	5	3	0	0	0	0.98782	1	8985	8985		11.631	11.631	1	3977000			38312	5774	28043	28275	37357	37357					0.031684609809644826
PDGLLTRKAY	10	Unmodified	_PDGLLTRKAY_					0	0	0			REV__nc|ENSG00000100031|P19440-2|GGT1	REV__nc|ENSG00000100031|P19440-2|GGT1	MULTI-SECPEP	A375_MHC_IP_R2	2	378.9483947753906	3	378.548629	1132.62406	-0.15366	-5.8169E-05	0.0016065	6.0812E-07	-0.15206	-5.7561E-05	378.5485392678531	26.78	0.40956	27.44	27.262	27.671	0.65992					12	7	2	0	0	0	0.8125	1	9113	9113		7.9454	2.8979	1	4714200	+		38313	17043	28044	28276	37358	37358					0.06305103397380662
PDGPQSSGSF	10	Unmodified	_PDGPQSSGSF_					0	0	0			REV__nc|ENSG00000189079|Q68CP9-3|ARID2	REV__nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-MSMS	A375_MHC_IP_R1	1	490.11126708984375	2	489.711796	977.40904	-0.12528	-6.135E-05	-0.76447	-0.00037437	-0.88975	-0.00043572	489.7113614287284	82.291	0.76131	82.291	81.961	82.722	0					23	14	2	0	0	0	0.69306	1	30059	30059		13.906	0.39817	1	4287500	+		38314	22138	28045	28277	37359	37359					-0.0805686313822207
PDGRAWKRGL	10	Unmodified	_PDGRAWKRGL_					0	0	0			REV__ENST00000446874.5_1_7:44068404-44068668:-|nuORF	REV__ENST00000446874.5_1_7:44068404-44068668:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	386.6326904296875	3	385.884235	1154.63087	0.077264	2.9815E-05	-1.609	-0.00062088	-1.5317	-0.00059106	385.88355732001315	24.372	0.30373	24.372	24.194	24.498	0					6	5	2	0	0	0	0.91556	1	6896	6896		5.7834	5.7834	1	2331800	+		38315	24861	28046	28278	37360	37360					0.05974461068603887
PDGRLHLPKL	10	Unmodified	_PDGRLHLPKL_					0	0	0		nc|ENSG00000171777|Q8TDF6-7|RASGRP4;nc|ENSG00000171777|Q8TDF6-8|RASGRP4;ENST00000592322.5_1_19:38901850-38916815:-|nuORF;nc|ENSG00000171777|Q8TDF6-2|RASGRP4;ENSG00000171777|ENST00000615439|RASGRP4	nc|ENSG00000171777|Q8TDF6-7|RASGRP4	nc|ENSG00000171777|Q8TDF6-7|RASGRP4	MSMS	A375_MHC_IP_R1	1	382.596435546875	3	382.564502	1144.67168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.13	1	26.13	25.63	26.63	0								0	0	0	0.15464	1	7745	7745		5.7834	0	1				38316	7637	28047	28279	37361	37361					0.1051280238821164
PDGRQGYHPCH	11	Unmodified	_PDGRQGYHPCH_					0	0	0			REV__ENST00000369774.8_3_10:105360094-105360547:-|nuORF	REV__ENST00000369774.8_3_10:105360094-105360547:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	423.2521057128906	3	422.852606	1265.53599	-0.0015086	-6.3793E-07	-2.1465	-0.00090765	-2.148	-0.00090829	422.8522811844991	44.146	0.4551	44.916	44.58	45.035	0.76909					19	8	4	0	0	0	0.99424	1	16502	16502		1.0136	0.088041	1	3445600	+		38317	24018	28048	28280	37362	37362					-0.08615840464858593
PDHCPGCD	8	Unmodified	_PDHCPGCD_					0	0	0		ENST00000395811.9_1_17:17057672-17061784:+|nuORF	ENST00000395811.9_1_17:17057672-17061784:+|nuORF	ENST00000395811.9_1_17:17057672-17061784:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	843.8358764648438	1	843.275999	842.268723	0.1375	0.00011595	-2.6095	-0.0022005	-2.472	-0.0020845	843.2722601624072	127.04	0.25111	127.04	126.86	127.11	0					6	4	2	0	0	0	0.972	1	48543	48543		2.5775	0	1	1942100			38318	11476	28049	28281	37363	37363					-0.158720616678238
PDHWLTRVQ	9	Unmodified	_PDHWLTRVQ_					0	0	0			REV__ENSG00000137801|ENST00000260356|THBS1;REV__ENSG00000186340|ENST00000617924|THBS2	REV__ENSG00000186340|ENST00000617924|THBS2	MULTI-SECPEP	A375_MHC_IP_R1	1	575.734619140625	2	576.301447	1150.58834	-0.38417	-0.0002214	-1.2116	-0.00069827	-1.5958	-0.00091967	576.3006653043694	24.117	0.7591	24.117	23.838	24.597	0					19	14	2	0	0	0	0.69507	1	6968	6968		5.7319	0	1	12545000	+	+	38319	15876;21965	28050	28282	37364	37364					0.019070659403723766
PDIDMPDDNKR	11	Unmodified	_PDIDMPDDNKR_					0	0	0		ENSG00000165983|ENST00000535784|PTER	ENSG00000165983|ENST00000535784|PTER	ENSG00000165983|ENST00000535784|PTER	MULTI-SECPEP	A375_MHC_IP_R1	1	439.3395690917969	3	439.203081	1314.58741	-0.31431	-0.00013805	1.0607	0.00046585	0.74637	0.00032781	439.5382081571371	19.243	0.19848	19.243	19.221	19.42	0					6	5	2	0	0	0	0.9889	1	4705	4705		1.0136	0	1	24183000			38320	7013	28051	28283	37365	37365					-0.05729561281509632
PDIVIFLKM	9	Unmodified	_PDIVIFLKM_					0	0	0		tr|U7SMX2|U7SMX2_FUSNUdTMPkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01731PE=3SV=1	tr|U7SMX2|U7SMX2_FUSNUdTMPkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01731PE=3SV=1	tr|U7SMX2|U7SMX2_FUSNUdTMPkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01731PE=3SV=1	MSMS	A375_MHC_IP_R1	1	359.24761962890625	3	359.212189	1074.61474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.982	1	27.982	27.482	28.482	0								0	0	0	0.15486	1	8566	8566		4.897	0.36815	1				38321	29540	28052	28284	37366	37366					0.08041618787501648
PDKASRWRP	9	Unmodified	_PDKASRWRP_					0	0	0			REV__ENST00000339950.4_1_1:62902551-62902854:+|nuORF	REV__ENST00000339950.4_1_1:62902551-62902854:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	371.2491760253906	3	371.536835	1111.58868	0.26384	9.8025E-05	0.66769	0.00024807	0.93153	0.0003461	371.53692509981926	19.881	0.70967	19.881	19.42	20.129	0					19	13	2	0	0	0	0.78353	1	5060	5060		9.544	9.544	1	1443100	+		38322	23716	28053	28285	37367	37367					0.03734485660243081
PDKDEQNSQY	10	Unmodified	_PDKDEQNSQY_					0	0	0			REV__RASGRF2|p.E202K|2|0.36|ENSG00000113319|chr5:81070552-81070552|G/A|missense_variant	REV__RASGRF2|p.E202K|2|0.36|ENSG00000113319|chr5:81070552-81070552|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	612.6619873046875	2	612.262382	1222.51021	-0.24316	-0.00014888	-0.19	-0.00011633	-0.43317	-0.00026521	612.262254010185	56.016	1.1169	56.016	55.482	56.599	0					57	21	4	0	0	0	0.50967	1	20000	20000		27.629	27.629	1	48520000	+		38323	27867	28054	28286	37368	37368					-0.09214456226186485
PDKDEQNSQY	10	Unmodified	_PDKDEQNSQY_					0	0	0			REV__RASGRF2|p.E202K|2|0.36|ENSG00000113319|chr5:81070552-81070552|G/A|missense_variant	REV__RASGRF2|p.E202K|2|0.36|ENSG00000113319|chr5:81070552-81070552|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	612.262382	1222.51021	-0.24316	-0.00014888	-0.19	-0.00011633	-0.43317	-0.00026521	612.262254010185	56.016	1.1169	56.016	55.482	56.599	0	-0.072552	-8.891E-05	NaN	27.629	57	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48520000	+		38324	27867	28054	28286							-0.09214456226186485
PDKEHAWNQL	10	Unmodified	_PDKEHAWNQL_					0	0	0			REV__nc|ENSG00000160695|Q9H270|VPS11	REV__nc|ENSG00000160695|Q9H270|VPS11	MULTI-SECPEP	A375_MHC_IP_R2	2	413.6554870605469	3	413.203522	1236.58874	-0.3059	-0.0001264	3.5026	0.0014473	3.1967	0.0013209	413.53902007905015	20.116	0.25383	20.726	20.549	20.803	0.61029					5	4	2	0	0	0	0.93799	1	6259	6259		0.62683	0	1	345080	+		38325	20180	28055	28287	37369	37369					-0.020095591304425398
PDKEHLENKL	10	Unmodified	_PDKEHLENKL_					0	0	0		ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	MULTI-SECPEP	A375_MHC_IP_R1	1	408.6517639160156	3	408.21906	1221.63535	-0.076085	-3.1059E-05	-2.5338	-0.0010344	-2.6099	-0.0010654	408.21767926161255	55.966	0.20064	55.966	55.841	56.041	0					5	3	2	0	0	0	0.93406	1	20043	20043		3.5871	2.8105	1	689300			38326	8122	28056	28288	37370	37370					0.03339880700832509
PDKILINLST	10	Unmodified	_PDKILINLST_					0	0	0			REV__nc|ENSG00000156535|Q6YHK3-3|CD109	REV__nc|ENSG00000156535|Q6YHK3-3|CD109	MULTI-SECPEP	A375_MHC_IP_R1	1	371.3045654296875	3	371.888651	1112.64412	0.0047773	1.7766E-06	1.716	0.00063817	1.7208	0.00063994	371.8892000329002	30.492	0.50503	30.492	30.301	30.806	0					12	9	2	0	0	0	0.93578	1	9796	9796		3.3196	3.1798	1	630590	+		38327	19988	28057	28289	37371	37371					0.09230854337306482
PDKLLGRDR	9	Unmodified	_PDKLLGRDR_					0	0	0		ENSG00000182631|ENST00000330120|RXFP3	ENSG00000182631|ENST00000330120|RXFP3	ENSG00000182631|ENST00000330120|RXFP3	MULTI-SECPEP	A375_MHC_IP_R2	2	534.6767578125	2	535.309272	1068.60399	-1.254	-0.00067128	-0.13456	-7.2029E-05	-1.3886	-0.00074331	535.3093791773201	25.188	0.35889	25.832	25.719	26.078	0.64368					8	6	2	0	0	0	0.78798	1	8351	8351		3.9444	1.8846	1	2187700			38328	8426	28058	28290	37372	37372					0.07243352457408037
PDKLYPEQF	9	Unmodified	_PDKLYPEQF_					0	0	0			REV__ENSG00000136404|ENST00000322019|TM6SF1	REV__ENSG00000136404|ENST00000322019|TM6SF1	MSMS	A375_MHC_IP_R2	2	379.4203186035156	3	379.525602	1135.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.21	1	26.87	26.37	27.37	0.65992								0	0	0	0.15486	1	8837	8837		4.5289	0.94181	1		+		38329	18936	28059	28291	37373	37373					-0.0073798062219339045
PDKVGNVA	8	Unmodified	_PDKVGNVA_					0	0	0			REV__nc|ENSG00000159363|Q9NQ11-3|ATP13A2	REV__nc|ENSG00000159363|Q9NQ11-3|ATP13A2	MSMS	A375_MHC_IP_R1	1	400.2561340332031	2	400.21906	798.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.426	1	34.426	33.926	34.926	0								0	0	0	0.16876	1	11347	11347		7.2892	1.5288	1		+		38330	20116	28060	28292	37374	37374					0.016292538005700408
PDKVHRDFR	9	Unmodified	_PDKVHRDFR_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;ENST00000488988.5_1_3:52422617-52433783:+|nuORF;ENST00000486752.5_1_3:52422617-52434459:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	A375_MHC_IP_R1	1	390.2901611328125	3	390.54399	1168.61014	0.064174	2.5063E-05	3.9596	0.0015464	4.0238	0.0015715	390.54386706853643	25.51	0.71178	25.51	25.255	25.966	0					25	13	3	0	0	0	0.71341	1	7493	7493		5.7834	0	1	3215800			38331	3248	28061	28293	37375	37375					0.03257870688935327
PDKVQMTWT	9	Unmodified	_PDKVQMTWT_					0	0	0		ENST00000514994.1_1_5:1057584-1063994:-|nuORF;ENSG00000113504|ENST00000264930|SLC12A7	ENST00000514994.1_1_5:1057584-1063994:-|nuORF	ENST00000514994.1_1_5:1057584-1063994:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	369.5829772949219	3	369.18307	1104.52738	0.18794	6.9383E-05	0.033362	1.2317E-05	0.2213	8.1699E-05	369.1830168743819	32.995	1.1131	32.995	32.785	33.898	0					34	21	2	0	0	0	0.71541	1	10737	10737		4.5289	2.9366	1	5970700			38332	3156	28062	28294	37376	37376					-0.02070207154088166
PDLAWCCAMV	10	Unmodified	_PDLAWCCAMV_					0	0	0			REV__ENSG00000163785|ENST00000623711|RYK	REV__ENSG00000163785|ENST00000623711|RYK	MULTI-MSMS	A375_MHC_IP_R1	1	554.6424560546875	2	554.734848	1107.45514	-0.49487	-0.00027452	-0.77371	-0.00042921	-1.2686	-0.00070373	554.7341326138695	52.162	0.45741	52.162	51.879	52.336	0					17	8	3	0	0	0	0.70329	1	18438	18438		10.824	0.75	1	1967800	+		38333	20410	28063	28295	37377	37377					-0.09428580823669108
PDLDGHGP	8	Unmodified	_PDLDGHGP_					0	0	0			REV__ENSG00000169951|ENST00000395091|ZNF764	REV__ENSG00000169951|ENST00000395091|ZNF764	MULTI-SECPEP	A375_MHC_IP_R2	2	806.656982421875	1	807.363158	806.355882	-0.85859	-0.0006932	-1.4579	-0.001177	-2.3165	-0.0018702	807.3601733378887	126.7	0.25374	126.97	126.8	127.06	0.26592					5	4	2	0	0	0	0.972	1	49543	49543		5.7604	0	1	2417800	+		38334	20956	28064	28296	37378	37378					-0.055041961302322306
PDLDRIRTL	9	Unmodified	_PDLDRIRTL_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21867883-21868626:-|nuORF	nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000012817|Q9BY66-2|KDM5D	MSMS	A375_MHC_IP_R1	1	366.9051208496094	3	366.880379	1097.61931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.075	1	26.075	25.575	26.575	0								0	0	0	0.15486	1	7717	7717		4.5289	0	1				38335	1013	28065	28297	37379	37379					0.07440219254635849
PDLEFCHW	8	Unmodified	_PDLEFCHW_					0	0	0			REV__ENST00000488829.1_1_9:89626569-89628063:+|nuORF	REV__ENST00000488829.1_1_9:89626569-89628063:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	524.1972045898438	2	523.723652	1045.43275	-0.41238	-0.00021597	1.5661	0.00082022	1.1537	0.00060425	524.2254768473052	96.715	1.7755	96.715	95.968	97.743	0					37	34	2	0	0	0	0.77123	1	35631	35631		14.582	5.2343	1	903130	+		38336	25361	28066	28298	37380	37380					-0.08814720905411377
PDLEFCHW	8	Unmodified	_PDLEFCHW_					0	0	0			REV__ENST00000488829.1_1_9:89626569-89628063:+|nuORF	REV__ENST00000488829.1_1_9:89626569-89628063:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	523.723652	1045.43275	-0.39016	-0.00020434	1.0757	0.00056339	0.68558	0.00035905	524.2253565949886	95.633	0.3047	96.383	96.144	96.449	0.75045	-0.16554	-0.00038021	NaN	14.582	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1051000	+		38337	25361	28066	28298							-0.08814720905411377
PDLEGALHNY	10	Unmodified	_PDLEGALHNY_					0	0	0			REV__ENSG00000182791|ENST00000333861|CCDC87	REV__ENSG00000182791|ENST00000333861|CCDC87	MULTI-SECPEP	A375_MHC_IP_R1	1	565.1690673828125	2	564.769645	1127.52474	-0.38363	-0.00021666	0.12953	7.3155E-05	-0.25409	-0.0001435	564.769714598548	59.61	0.45705	59.61	59.397	59.854	0					11	8	2	0	0	0	0.8528	1	21464	21464		11.495	0	1	1787400	+		38338	21709	28067	28299	37381	37381					-0.03392339287370305
PDLGLGGQVRY	11	Unmodified	_PDLGLGGQVRY_					0	0	0		ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3;nc|ENSG00000165323|Q8TDW7-2|FAT3	ENSG00000165323|ENST00000525166|FAT3	ENSG00000165323|ENST00000525166|FAT3	MULTI-SECPEP	A375_MHC_IP_R2	2	391.93646240234375	3	392.212017	1173.61422	-0.48658	-0.00019084	0.38545	0.00015118	-0.10113	-3.9664E-05	392.2121728851877	24.238	0.55878	24.882	24.705	25.263	0.64368					18	10	2	0	0	0	0.9754	1	8090	8090		6.6235	0.84002	1	21828000			38339	6942	28068	28300	37382	37382					0.034359153920149765
PDLGLVFQFL	10	Unmodified	_PDLGLVFQFL_					0	0	0		ENST00000336431.9_1_20:33432700-33432826:-|nuORF	ENST00000336431.9_1_20:33432700-33432826:-|nuORF	ENST00000336431.9_1_20:33432700-33432826:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	575.22265625	2	574.82115	1147.62775	-0.099193	-5.7018E-05	3.1386	0.0018041	3.0394	0.0017471	574.8239486800117	88.494	0.61125	88.494	88.256	88.867	0					21	11	3	0	0	0	0.64716	1	32500	32500		29.082	0	1	1599100			38340	10815	28069	28301	37383	37383					0.05983773171237772
PDLIGVSLP	9	Unmodified	_PDLIGVSLP_					0	0	0			REV__ENSG00000115112|ENST00000263707|TFCP2L1	REV__ENSG00000115112|ENST00000263707|TFCP2L1	MULTI-MSMS	A375_MHC_IP_R1	1	911.7056884765625	1	910.52441	909.517133	0.10026	9.1289E-05	-1.4856	-0.0013527	-1.3853	-0.0012614	910.5229463634456	127.95	0.71011	127.95	127.72	128.43	0					31	13	3	0	0	0	0.27715	1	49230	49230		32.305	5.4218	1	1088000000	+		38341	17856	28070	28302	37384	37384					0.05875553183000193
PDLIQQIIKK	10	Unmodified	_PDLIQQIIKK_					0	0	0		nc|ENSG00000164616|Q9UKT6|FBXL21P	nc|ENSG00000164616|Q9UKT6|FBXL21P	nc|ENSG00000164616|Q9UKT6|FBXL21P	MSMS	A375_MHC_IP_R1	1	399.2786560058594	3	399.251813	1194.73361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.313	1	20.313	19.813	20.813	0								0	0	0	0.15547	1	5197	5197		3.0723	0.81953	1				38342	14731	28071	28303	37385	37385					0.14403109016689086
PDLKQWTYSEY	11	Unmodified	_PDLKQWTYSEY_					0	0	0			REV__ENST00000434365.1_1_X:114938170-114938437:+|nuORF	REV__ENST00000434365.1_1_X:114938170-114938437:+|nuORF	MSMS	A375_MHC_IP_R2	2	715.352783203125	2	715.33535	1428.65615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.35	1	108.1	107.6	108.6	0.75436								0	0	0	0.16258	1	40556	40556		5.2969	2.3016	1		+		38343	24738	28072	28304	37386	37386					-0.041035737101083214
PDLLIEELSP	10	Unmodified	_PDLLIEELSP_					0	0	0			REV__ENST00000485431.1_1_X:48771410-48771858:-|nuORF	REV__ENST00000485431.1_1_X:48771410-48771858:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	562.8937377929688	2	563.305529	1124.59651	-0.251	-0.00014139	-0.6399	-0.00036046	-0.8909	-0.00050185	563.3049554868485	78.934	0.60661	78.934	78.454	79.061	0					19	11	2	0	0	0	0.91909	1	28712	28712		13.906	4.5229	1	2539200	+		38344	17204	28073	28305	37387	37387					0.039191553464888784
PDLRFKKL	8	Unmodified	_PDLRFKKL_					0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	A375_MHC_IP_R2	2	508.1313781738281	2	508.816202	1015.61785	-0.77626	-0.00039497	0.60562	0.00030815	-0.17064	-8.6822E-05	508.81797211150126	39.571	0.20276	40.345	40.219	40.422	0.77451					5	3	2	0	0	0	0.972	1	14581	14581		5.7604	3.1829	1	695190	+		38345	16815	28074	28306	37388	37388					0.11066629956508223
PDLRPFTEQL	10	Unmodified	_PDLRPFTEQL_					0	0	0			REV__ENSG00000239887|ENST00000458626|C1orf226	REV__ENSG00000239887|ENST00000458626|C1orf226	MULTI-SECPEP	A375_MHC_IP_R1	1	608.1878051757812	2	608.322045	1214.62954	-0.32279	-0.00019636	-0.15299	-9.307E-05	-0.47578	-0.00028943	608.3221667726042	73.324	0.70923	73.324	72.83	73.539	0					30	13	3	0	0	0	0.88918	1	26543	26543		18.146	1.9972	1	5389300	+		38346	22775	28075	28307	37389	37389					0.030807821891812637
PDLSGPHSYSP	11	Unmodified	_PDLSGPHSYSP_					0	0	0		ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-3|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	MULTI-SECPEP	A375_MHC_IP_R1	1	386.5804748535156	3	386.180494	1155.51965	0.032816	1.2673E-05	0.078243	3.0216E-05	0.11106	4.2889E-05	386.1804263768921	24.017	0.85985	24.017	23.889	24.749	0					25	16	2	0	0	0	0.86796	1	6724	6724		16.275	7.9881	1	15843000			38347	8043	28076	28308	37390	37390					-0.05188643149995187
PDLSKTWRY	9	Unmodified	_PDLSKTWRY_					0	0	0			REV__ENSG00000165684|ENST00000684778|SNAPC4	REV__ENSG00000165684|ENST00000684778|SNAPC4	MULTI-MSMS	A375_MHC_IP_R2	2	389.9388732910156	3	389.204862	1164.59276	-0.49443	-0.00019243	-0.7838	-0.00030506	-1.2782	-0.00049749	389.2036017474196	21.115	0.50709	21.734	21.371	21.878	0.61932					30	9	4	0	0	0	0.67152	1	6641	6641		9.544	4.1413	1	2393600	+		38348	20611	28077	28309	37391	37391					0.017045303632812647
PDLSLHSPTAQ	11	Unmodified	_PDLSLHSPTAQ_					0	0	0			REV__ENST00000290881.11_1_16:67217371-67217884:-|nuORF	REV__ENST00000290881.11_1_16:67217371-67217884:-|nuORF	MSMS	A375_MHC_IP_R1	1	583.2079467773438	2	583.296027	1164.5775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.726	1	67.726	67.226	68.226	0								0	0	0	0.15837	1	24546	24546		15.248	3.0078	1		+		38349	23359	28078	28310	37392	37392					0.001796187754280254
PDLSLLCWPGR	11	Unmodified	_PDLSLLCWPGR_					0	0	0			REV__ENST00000306384.4_1_2:85820230-85820377:+|nuORF	REV__ENST00000306384.4_1_2:85820230-85820377:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	419.6069030761719	3	419.553386	1255.63833	-0.019231	-8.0686E-06	3.2621	0.0013686	3.2428	0.0013605	419.5544461651007	19.469	0.25416	19.469	19.368	19.623	0					6	4	2	0	0	0	0.99411	1	4838	4838		9.7643	5.9183	1	511830	+		38350	23469	28079	28311	37393	37393					0.020734325539933707
PDLTNFTVEEL	11	Unmodified	_PDLTNFTVEEL_					0	0	0		nc|ENSG00000165494|O94913|PCF11;ENSG00000165494|ENST00000690938|PCF11	nc|ENSG00000165494|O94913|PCF11	nc|ENSG00000165494|O94913|PCF11	MSMS	A375_MHC_IP_R1	1	426.6462097167969	3	426.546842	1276.6187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.92	1	129.92	129.42	130.42	0								0	0	0	0.16302	1	49979	49979		2.6312	1.1761	1				38351	6959	28080	28312	37394	37394					-0.008546649757590785
PDLVLRVFF	9	Unmodified	_PDLVLRVFF_					0	0	0		ENST00000361360.3_2_2:105474794-105474911:+|nuORF	ENST00000361360.3_2_2:105474794-105474911:+|nuORF	ENST00000361360.3_2_2:105474794-105474911:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	369.28143310546875	3	369.218332	1104.63317	0.47751	0.0001763	-2.0119	-0.00074282	-1.5344	-0.00056651	369.55284153389346	71.532	0.70623	71.532	71.211	71.917	0					21	13	3	0	0	0	0.69317	1	26014	26014		7.609	1.4171	1	2281800			38352	11043	28081	28313	37395	37395					0.08503496753723994
PDLVQWTRH	9	Unmodified	_PDLVQWTRH_					0	0	0		nc|ENSG00000167780|O75908-4|SOAT2;nc|ENSG00000167780|O75908-3|SOAT2;nc|ENSG00000167780|O75908-2|SOAT2;ENSG00000167780|ENST00000301466|SOAT2	nc|ENSG00000167780|O75908-4|SOAT2	nc|ENSG00000167780|O75908-4|SOAT2	MULTI-MSMS	A375_MHC_IP_R1	1	384.9363708496094	3	384.536724	1150.58834	0.12382	4.7612E-05	-1.3159	-0.00050602	-1.1921	-0.0004584	384.5361816951945	33.013	0.90801	33.013	32.383	33.291	0					34	17	4	0	0	0	0.6343	1	10707	10707		12.873	1.9736	1	20215000			38353	7224	28082	28314	37396	37396					0.019070659403496393
PDNFSCECL	9	Unmodified	_PDNFSCECL_					0	0	0			REV__ENSG00000056097|ENST00000265069|ZFR	REV__ENSG00000056097|ENST00000265069|ZFR	MSMS	A375_MHC_IP_R1	1	514.1843872070312	2	514.19661	1026.37867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.81	1	100.81	100.31	101.31	0								0	0	0	0.15486	1	37056	37056		4.756	0	1		+		38354	16420	28083	28315	37397	37397					-0.13346681119287496
PDPCRLTRY	9	Unmodified	_PDPCRLTRY_					0	0	0			REV__ENST00000397677.5_1_8:23118732-23118936:+|nuORF	REV__ENST00000397677.5_1_8:23118732-23118936:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	374.9684143066406	3	374.190447	1119.54951	0.11081	4.1466E-05	0.69685	0.00026075	0.80766	0.00030222	374.5251831410398	23.381	0.56064	23.381	23.227	23.787	0					14	10	2	0	0	0	0.71541	1	6492	6492		7.609	0.13188	1	2603600	+		38355	24362	28084	28316	37398	37398					-0.005479826856799264
PDPDPKRGFLD	11	Unmodified	_PDPDPKRGFLD_					0	0	0		chrX:55159228-55164015|126|24.87|0.01|11.34|-|2|TE_info:MER41C,MER41C_dup415,ERV1,LTR,donor,+,55164015,55164086|FAM104B,None|1	chrX:55159228-55164015|126|24.87|0.01|11.34|-|2|TE_info:MER41C,MER41C_dup415,ERV1,LTR,donor,+,55164015,55164086|FAM104B,None|1	chrX:55159228-55164015|126|24.87|0.01|11.34|-|2|TE_info:MER41C,MER41C_dup415,ERV1,LTR,donor,+,55164015,55164086|FAM104B,None|1	MULTI-MSMS	A375_MHC_IP_R2	2	419.9466857910156	3	419.547177	1255.6197	-0.52022	-0.00021826	-0.15719	-6.5949E-05	-0.67741	-0.00028421	419.54704488686866	25.369	0.71202	26.013	25.568	26.28	0.64368					28	13	3	0	0	0	0.7328	1	8503	8503		6.2344	0.45093	1	2920900			38356	528	28085	28317	37399	37399					0.002115941838155777
PDPHNCEKF	9	Unmodified	_PDPHNCEKF_					0	0	0		ZNF592|p.G108E|1|0.55|ENSG00000166716|chr15:84782998-84782998|G/A|missense_variant	ZNF592|p.G108E|1|0.55|ENSG00000166716|chr15:84782998-84782998|G/A|missense_variant	ZNF592|p.G108E|1|0.55|ENSG00000166716|chr15:84782998-84782998|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	543.7003784179688	2	543.737291	1085.46003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.78	1	100.78	100.28	101.28	0								0	0	0	0.15411	1	37041	37041		14.838	0.93222	1				38357	30231	28086	28318	37400	37400					-0.07928237365035784
PDPLAAPV	8	Unmodified	_PDPLAAPV_					0	0	0		ENST00000263674.3_1_11:73078903-73079227:+|nuORF	ENST00000263674.3_1_11:73078903-73079227:+|nuORF	ENST00000263674.3_1_11:73078903-73079227:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	390.2816467285156	2	390.218529	778.422505	-0.62234	-0.00024285	-2.9576	-0.0011541	-3.5799	-0.001397	390.2153416938441	25.663	0.45596	26.323	26.044	26.5	0.65992					13	8	2	0	0	0	0.972	1	8612	8612		2.5775	0	1	1474900			38358	10322	28087	28319	37401	37401					0.024430394316595994
PDPLEPIQEQE	11	Unmodified	_PDPLEPIQEQE_					0	0	0			REV__nc|ENSG00000101868|P09884|POLA1	REV__nc|ENSG00000101868|P09884|POLA1	MULTI-SECPEP	A375_MHC_IP_R1	1	432.2749328613281	3	432.21023	1293.60886	-0.038811	-1.6774E-05	-1.5096	-0.00065248	-1.5484	-0.00066926	432.209418649074	40.484	0.30498	40.484	40.304	40.609	0					9	5	2	0	0	0	0.99482	1	13948	13948		3.8459	0	1	2131000	+		38359	27151	28088	28320	37402	37402					-0.026198529811381377
PDPLFVWSI	9	Unmodified	_PDPLFVWSI_					0	0	0			REV__ENST00000490586.1_1_7:73634828-73639069:+|nuORF	REV__ENST00000490586.1_1_7:73634828-73639069:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	537.6866455078125	2	537.286943	1072.55933	-0.75371	-0.00040496	1.6411	0.00088176	0.88741	0.0004768	537.2878778287358	64.765	0.71113	64.765	64.444	65.156	0					21	13	2	0	0	0	0.3607	1	23421	23421		26.884	4.1474	1	2028600	+		38360	25388	28089	28321	37403	37403					0.0259552859138239
PDPLLLQRLP	10	Unmodified	_PDPLLLQRLP_					0	0	0		ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3	ENSG00000149781|ENST00000345728|FERMT3	ENSG00000149781|ENST00000345728|FERMT3	MULTI-SECPEP	A375_MHC_IP_R1	1	387.2998962402344	3	387.904524	1160.69174	-0.0057052	-2.2131E-06	0.12961	5.0276E-05	0.1239	4.8063E-05	387.90475292916767	24.15	0.30487	24.15	23.94	24.245	0					7	5	2	0	0	0	0.93799	1	6712	6712		0.62683	0.063655	1	3698300			38361	5829	28090	28322	37404	37404					0.11782553328180256
PDPLLTNPNF	10	Unmodified	_PDPLLTNPNF_					0	0	0			REV__ENSG00000178538|ENST00000317995|CA8	REV__ENSG00000178538|ENST00000317995|CA8	MULTI-SECPEP	A375_MHC_IP_R1	1	564.2326049804688	2	564.290214	1126.56587	-0.24181	-0.00013645	0.47401	0.00026748	0.2322	0.00013103	564.290400955143	70.313	0.56142	70.313	69.933	70.494	0					15	8	2	0	0	0	0.79457	1	25504	25504		20.415	3.4722	1	1646000	+		38362	21509	28091	28323	37405	37405					0.007654217520666862
PDPLSRHHAF	10	Unmodified	_PDPLSRHHAF_					0	0	0		nc|ENSG00000157766|P16112-3|ACAN;nc|ENSG00000157766|P16112-2|ACAN;nc|ENSG00000157766|P16112|ACAN;ENSG00000157766|ENST00000560601|ACAN	nc|ENSG00000157766|P16112-3|ACAN	nc|ENSG00000157766|P16112-3|ACAN	MULTI-SECPEP	A375_MHC_IP_R2	2	393.296142578125	3	392.868473	1175.58359	-0.50202	-0.00019723	-0.069008	-2.7111E-05	-0.57103	-0.00022434	392.8685201237245	23.355	0.25271	23.986	23.777	24.029	0.63014					7	4	2	0	0	0	0.85226	1	7480	7480		12.873	0	1	1444800			38363	6265	28092	28324	37406	37406					0.0028218179761552165
PDPNQINPKVN	11	Unmodified	_PDPNQINPKVN_					0	0	0			REV__chr14:22523654-22547506|202|16.4|0.0|20.65|+|2|TRAJ21,TRAC|1	REV__chr14:22523654-22547506|202|16.4|0.0|20.65|+|2|TRAJ21,TRAC|1	MULTI-MSMS	A375_MHC_IP_R2	2	618.7223510742188	2	618.322576	1234.6306	-0.79719	-0.00049292	0.10306	6.3725E-05	-0.69413	-0.0004292	618.322778450356	66.563	0.66489	67.3	66.932	67.597	0.73631					27	12	3	0	0	0	0.69231	1	25208	25208		16.149	2.5342	1	5928500	+		38364	15704	28093	28325	37407	37407					0.02266996558091705
PDPNQINPKVN	11	Unmodified	_PDPNQINPKVN_					0	0	0			REV__chr14:22523654-22547506|202|16.4|0.0|20.65|+|2|TRAJ21,TRAC|1	REV__chr14:22523654-22547506|202|16.4|0.0|20.65|+|2|TRAJ21,TRAC|1	MULTI-MATCH	A375_MHC_IP_R1	1		2	618.322576	1234.6306	-0.6919	-0.00042781	0.62772	0.00038813	-0.064179	-3.9683E-05	618.3230451857743	67.424	0.61391	67.424	67.04	67.654	0	0.062309	0.00040623	NaN	16.149	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6047500	+		38365	15704	28093	28325							0.02266996558091705
PDPQGSNMMF	10	Unmodified	_PDPQGSNMMF_					0	0	0		ENST00000490885.6_1_1:186645551-186649536:-|nuORF;ENSG00000073756|ENST00000367468|PTGS2	ENST00000490885.6_1_1:186645551-186649536:-|nuORF	ENST00000490885.6_1_1:186645551-186649536:-|nuORF	MSMS	A375_MHC_IP_R2	2	562.1640625	2	562.230984	1122.44742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.628	1	27.287	26.787	27.787	0.65992								0	0	0	0.15332	1	9020	9020		10.074	0.6908	1				38366	1570	28094	28326	37408	37408					-0.10891016819573451
PDPQKPLNDQE	11	Unmodified	_PDPQKPLNDQE_					0	0	0		nc|ENSG00000189195|Q5XKL5-4|BTBD8;nc|ENSG00000189195|Q5XKL5|BTBD8	nc|ENSG00000189195|Q5XKL5-4|BTBD8	nc|ENSG00000189195|Q5XKL5-4|BTBD8	MULTI-SECPEP	A375_MHC_IP_R2	2	641.2098999023438	2	640.809499	1279.60444	-0.66962	-0.0004291	0.78472	0.00050285	0.11509	7.3753E-05	640.8099201245174	69.882	0.4573	70.616	70.437	70.895	0.73421					14	8	2	0	0	0	0.98673	1	26522	26522		10.151	4.8537	1	2293500			38367	14830	28095	28327	37409	37409					-0.02417317404069763
PDPRGSLRG	9	Unmodified	_PDPRGSLRG_					0	0	0			REV__ENST00000261191.11_1_12:27090906-27091155:-|nuORF	REV__ENST00000261191.11_1_12:27090906-27091155:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	956.84814453125	1	954.511554	953.504277	0.10783	0.00010292	-0.27517	-0.00026266	-0.16735	-0.00015973	954.5111988496044	102.13	0.65842	102.13	101.85	102.51	0					22	12	3	0	0	0	0.70307	1	37496	37496		6.7232	0	1	4525600	+		38368	23181	28096	28328	37410	37410					0.02566534843469981
PDPRGSLRG	9	Unmodified	_PDPRGSLRG_					0	0	0			REV__ENST00000261191.11_1_12:27090906-27091155:-|nuORF	REV__ENST00000261191.11_1_12:27090906-27091155:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	954.511554	953.504277	0.10783	0.00010292	-0.27517	-0.00026266	-0.16735	-0.00015973	954.5111988496044	102.13	0.65842	102.13	101.85	102.51	0	0.064219	-0.00018605	NaN	6.7232	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4525600	+		38369	23181	28096	28328							0.02566534843469981
PDPRGSLRG	9	Unmodified	_PDPRGSLRG_					0	0	0			REV__ENST00000261191.11_1_12:27090906-27091155:-|nuORF	REV__ENST00000261191.11_1_12:27090906-27091155:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	954.511554	953.504277	-0.033093	-3.1588E-05	0.11783	0.00011247	0.08474	8.0886E-05	954.5115708078844	101.24	0.6095	102	101.75	102.36	0.76428	-0.064219	0.00018908	NaN	6.7232	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4743600	+		38370	23181	28096	28328							0.02566534843469981
PDPSFPRFF	9	Unmodified	_PDPSFPRFF_					0	0	0			REV__ENSG00000172289|ENST00000307552|OR10V1	REV__ENSG00000172289|ENST00000307552|OR10V1	MULTI-SECPEP	A375_MHC_IP_R1	1	369.9149475097656	3	370.51867	1108.53418	0.6686	0.00024773	-3.641	-0.0013491	-2.9724	-0.0011013	370.85239604437805	22.807	0.45493	22.807	22.469	22.924	0					19	8	3	0	0	0	0.78753	1	6150	6150		0.96228	0	1	930950	+		38371	21133	28097	28329	37411	37411					-0.015745262111977354
PDPTFRPQPSV	11	Unmodified	_PDPTFRPQPSV_					0	0	0		ENST00000468317.2_1_10:135209253-135209713:+|nuORF	ENST00000468317.2_1_10:135209253-135209713:+|nuORF	ENST00000468317.2_1_10:135209253-135209713:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	414.60955810546875	3	414.215539	1239.62479	-0.0075695	-3.1354E-06	-0.59914	-0.00024817	-0.60671	-0.00025131	414.2152638813101	30.448	0.60514	31.167	30.962	31.567	0.71857					31	11	4	0	0	0	0.73064	1	10624	10624		8.2864	0	1	22079000			38372	12304	28098	28330	37412	37412					0.014558980464244087
PDPTLPQPQR	10	Unmodified	_PDPTLPQPQR_					0	0	0		ENST00000295404.9_1_19:50200719-50213852:+|nuORF;ENST00000599023.5_1_19:50195509-50213852:+|nuORF;nc|ENSG00000169169|Q8TCG5-3|CPT1C;nc|ENSG00000169169|Q8TCG5-2|CPT1C;ENSG00000169169|ENST00000598293|CPT1C	ENST00000295404.9_1_19:50200719-50213852:+|nuORF	ENST00000295404.9_1_19:50200719-50213852:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	383.9399719238281	3	383.540134	1147.59857	0.035383	1.3571E-05	0.24359	9.3427E-05	0.27897	0.000107	383.54017621836533	47.622	0.50833	48.384	48.174	48.682	0.76128					16	9	2	0	0	0	0.70027	1	17898	17898		12.175	1.3752	1	2948200			38373	7386	28099	28331	37413	37413					0.030676288749418745
PDQDGDVTVNF	11	Unmodified	_PDQDGDVTVNF_					0	0	0		nc|ENSG00000112419|O75167-5|PHACTR2;nc|ENSG00000112419|O75167-2|PHACTR2;nc|ENSG00000112419|O75167|PHACTR2;ENSG00000112419|ENST00000440869|PHACTR2;ENST00000402863.3_1_6:143999267-144075081:+|nuORF	nc|ENSG00000112419|O75167-5|PHACTR2	nc|ENSG00000112419|O75167-5|PHACTR2	MULTI-SECPEP	A375_MHC_IP_R1	1	403.28118896484375	3	402.847292	1205.52005	-0.70309	-0.00028324	3.6269	0.0014611	2.9238	0.0011778	403.1832074989234	23.61	0.35658	23.61	23.381	23.737	0					14	6	4	0	0	0	0.98748	1	6560	6560		2.4348	0	1	4122000			38374	3086	28100	28332	37414	37414					-0.07449268220807426
PDQDWNVK	8	Unmodified	_PDQDWNVK_					0	0	0			REV__ENSG00000129465|ENST00000216274|RIPK3	REV__ENSG00000129465|ENST00000216274|RIPK3	MSMS	A375_MHC_IP_R1	1	501.1982116699219	2	501.237981	1000.46141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.01	1	24.01	23.51	24.51	0								0	0	0	0.16876	1	6711	6711		4.756	0	1		+		38375	18491	28101	28333	37415	37415					-0.03880280004625547
PDQEKRIRLK	10	Unmodified	_PDQEKRIRLK_					0	0	0			REV__ENST00000460833.1_1_3:64670856-64785255:+|nuORF	REV__ENST00000460833.1_1_3:64670856-64785255:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	642.2819213867188	2	641.883136	1281.75172	-0.91207	-0.00058545	0.10338	6.636E-05	-0.80869	-0.00051909	641.8825773407821	148.97	1.434	148.97	148.16	149.6	0					49	28	2	0	0	0	0.72712	1	56946	56946		0	0	1	166430	+		38376	24969	28102	28334	37416	37416					0.12211243991396259
PDQFMECTY	9	Unmodified	_PDQFMECTY_					0	0	0			REV__nc|ENSG00000171291|Q8NDP4|ZNF439	REV__nc|ENSG00000171291|Q8NDP4|ZNF439	MSMS	A375_MHC_IP_R1	1	567.1611938476562	2	567.217543	1132.42053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.227	1	79.227	78.727	79.727	0								0	0	0	0.15486	1	28918	28918		7.9102	0	1		+		38377	27356	28103	28335	37417	37417					-0.14038125430738546
PDQGFLYTTL	10	Unmodified	_PDQGFLYTTL_					0	0	0			REV__ENST00000461426.1_1_9:34635631-34637430:-|nuORF	REV__ENST00000461426.1_1_9:34635631-34637430:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	385.64739990234375	3	385.529123	1153.56554	-0.38947	-0.00015015	-3.2164	-0.00124	-3.6059	-0.0013902	385.5279503016786	23.736	0.20258	24.366	24.283	24.485	0.63015					5	3	2	0	0	0	0.92832	1	7713	7713		5.4027	0	1	1632000	+		38378	19613	28104	28336	37418	37418					-0.0050999796776523
PDQLAAPRAGL	11	Unmodified	_PDQLAAPRAGL_					0	0	0			REV__ENST00000371852.3_1_10:90966825-90966861:-|nuORF	REV__ENST00000371852.3_1_10:90966825-90966861:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	369.58892822265625	3	370.208495	1107.60366	0.032237	1.1935E-05	-0.5666	-0.00020976	-0.53436	-0.00019782	370.20820144385686	23.497	0.25256	24.128	23.979	24.232	0.63014					6	4	2	0	0	0	0.99482	1	7554	7554		3.8459	0	1	992180	+		38379	24054	28105	28337	37419	37419					0.0541593273756007
PDQNVTRSRSK	11	Unmodified	_PDQNVTRSRSK_					0	0	0		ENSG00000129595|ENST00000261486|EPB41L4A	ENSG00000129595|ENST00000261486|EPB41L4A	ENSG00000129595|ENST00000261486|EPB41L4A	MULTI-SECPEP	A375_MHC_IP_R2	2	643.7242431640625	2	644.341832	1286.66911	-1.1044	-0.00071158	0.50543	0.00032567	-0.59892	-0.00038591	644.8433912064119	56.632	0.30618	57.382	57.203	57.51	0.75015					8	5	2	0	0	0	0.99018	1	21360	21360		2.2828	0	1	790800			38380	4200	28106	28338	37420	37420					0.03724302192608775
PDQRKLLIKA	10	Unmodified	_PDQRKLLIKA_					0	0	0			REV__ENSG00000186160|ENST00000334194|CYP4Z1	REV__ENSG00000186160|ENST00000334194|CYP4Z1	MSMS	A375_MHC_IP_R1	1	394.5858459472656	3	394.583674	1180.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.198	1	21.198	20.698	21.698	0								0	0	0	0.15486	1	5539	5539		5.0475	0.64137	1		+		38381	21951	28107	28339	37421	37421					0.14605644593802936
PDQTLGLLVY	10	Unmodified	_PDQTLGLLVY_					0	0	0			REV__OR4A16|p.F10Y|1|0.2|ENSG00000181961|chr11:55343229-55343229|T/A|missense_variant	REV__OR4A16|p.F10Y|1|0.2|ENSG00000181961|chr11:55343229-55343229|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	373.9411926269531	3	373.541252	1117.60193	0.36799	0.00013746	0.67193	0.00025099	1.0399	0.00038845	373.54105104381523	40.33	0.56032	40.33	39.999	40.559	0					17	10	3	0	0	0	0.71866	1	13913	13913		1.9064	0	1	2565300	+		38382	27667	28108	28340	37422	37422					0.047828789289496854
PDRARLKMF	9	Unmodified	_PDRARLKMF_					0	0	0			REV__nc|ENSG00000102786|Q9UL03-2|INTS6	REV__nc|ENSG00000102786|Q9UL03-2|INTS6	MSMS	A375_MHC_IP_R1	1	378.584228515625	3	378.546454	1132.61753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.06	1	29.06	28.56	29.56	0								0	0	0	0.15411	1	9040	9040		10.151	1.1743	1		+		38383	17232	28109	28341	37423	37423					0.05652886965003745
PDRDFFYQ	8	Unmodified	_PDRDFFYQ_					0	0	0			REV__ENSG00000184408|ENST00000331113|KCND2	REV__ENSG00000184408|ENST00000331113|KCND2	MSMS	A375_MHC_IP_R1	1	363.1201171875	3	363.166296	1086.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.876	1	59.876	59.376	60.376	0								0	0	0	0.16876	1	21548	21548		1.1933	0.23107	1		+		38384	21818	28110	28342	37424	37424					-0.06271993487575855
PDRGATILRV	10	Unmodified	_PDRGATILRV_					0	0	0			REV__ENST00000304301.10_1_16:4745384-4745600:+|nuORF	REV__ENST00000304301.10_1_16:4745384-4745600:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	366.5732421875	3	366.552374	1096.63529	-0.024285	-8.9017E-06	0.31783	0.0001165	0.29354	0.0001076	366.5524680635805	23.457	1.018	23.457	23.227	24.245	0					48	19	4	0	0	0	0.71455	1	6699	6699		5.7834	0	1	58912000	+		38385	23454	28111	28343	37425	37425					0.0908392549151813
PDRGIRRFP	9	Unmodified	_PDRGIRRFP_					0	0	0		ENST00000478808.2_1_12:109490357-109491595:-|nuORF	ENST00000478808.2_1_12:109490357-109491595:-|nuORF	ENST00000478808.2_1_12:109490357-109491595:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	372.57684326171875	3	371.880713	1112.62031	0.12544	4.6649E-05	2.5492	0.00094799	2.6746	0.00099464	371.88174049174864	23.223	0.25347	23.853	23.726	23.979	0.63014					7	4	2	0	0	0	0.77396	1	7460	7460		6.6304	3.3491	1	2180000			38386	12468	28112	28344	37426	37426					0.0685047841418509
PDRGLNRIL	9	Unmodified	_PDRGLNRIL_					0	0	0			REV__ENST00000354955.4_1_1:203320175-203320316:-|nuORF	REV__ENST00000354955.4_1_1:203320175-203320316:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	351.6431579589844	3	351.876969	1052.60908	-0.20837	-7.3322E-05	2.0575	0.00072399	1.8491	0.00065067	351.8778595317508	28.25	0.30197	28.25	28.088	28.39	0					8	5	2	0	0	0	0.78348	1	8634	8634		4.897	0.56777	1	761410	+		38387	23816	28113	28345	37427	37427					0.08487656320039605
PDRLWHEELA	10	Unmodified	_PDRLWHEELA_					0	0	0			REV__nc|ENSG00000197558|A2VEC9|SSPOP	REV__nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-MSMS	A375_MHC_IP_R1	1	422.9471435546875	3	422.547288	1264.62004	0.05825	2.4614E-05	0.22716	9.5987E-05	0.28541	0.0001206	422.54720366359606	55.991	1.0662	55.991	55.482	56.548	0					77	20	5	0	0	0	0.70179	1	20182	20182		10.315	2.3698	1	17956000	+		38388	27442	28114	28346	37428	37428					-0.0016898609633244632
PDRMVKVS	8	Unmodified	_PDRMVKVS_					0	0	0			REV__PABPC4|p.T217I|1|0.08|ENSG00000090621|chr1:39569683-39569683|G/A|missense_variant	REV__PABPC4|p.T217I|1|0.08|ENSG00000090621|chr1:39569683-39569683|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	466.19549560546875	2	466.25512	930.495686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.31	1	135.45	134.95	135.95	0.13901								0	0	0	0.16876	1	53199	53199		5.2307	0	1		+		38389	16930	28115	28347	37429	37429					0.027658448826400672
PDRPSLLYLL	10	Unmodified	_PDRPSLLYLL_					0	0	0			REV__ENSG00000080608|ENST00000397885|PUM3	REV__ENSG00000080608|ENST00000397885|PUM3	MSMS	A375_MHC_IP_R2	2	396.2804870605469	3	396.23253	1185.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.584	1	21.195	20.695	21.695	0.61029								0	0	0	0.15397	1	6420	6420		7.9454	0.33645	1		+		38390	16753	28116	28348	37430	37430					0.09034847091288611
PDRQRRKREL	10	Unmodified	_PDRQRRKREL_					0	0	0		nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	MULTI-MSMS	A375_MHC_IP_R1	1	677.3868408203125	2	677.394733	1352.77491	-0.98735	-0.00066882	0.39849	0.00026993	-0.58886	-0.00039889	677.3946321688611	146.52	0.038513	146.52	146.49	146.53	0					5	3	2	0	0	0	0.72712	1	56049	56049		0	0	1	53527			38391	6748	28117	28349	37431	37431					0.11263682828735
PDRRRRRR	8	Unmodified	_PDRRRRRR_					0	0	0			REV__ENSG00000113593|ENST00000261308|PPWD1	REV__ENSG00000113593|ENST00000261308|PPWD1	MSMS	A375_MHC_IP_R2	2	584.4218139648438	2	584.355745	1166.69694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.08	1	143.11	142.61	143.61	0.030731								0	0	0	0.16876	1	55927	55927		2.0598	0.21551	1		+		38392	17791	28118	28350	37432	37432					0.12025714754008732
PDRSFRLMF	9	Unmodified	_PDRSFRLMF_					0	0	0			REV__SMARCD3|p.S411R|1|0.14|ENSG00000082014|chr7:151239689-151239689|T/G|missense_variant	REV__SMARCD3|p.S411R|1|0.14|ENSG00000082014|chr7:151239689-151239689|T/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	389.5924072265625	3	390.202576	1167.5859	-0.058215	-2.2716E-05	3.4479	0.0013454	3.3897	0.0013227	390.53928065682885	24.138	0.25395	24.138	23.991	24.245	0					11	4	4	0	0	0	0.77003	1	6835	6835		7.609	0	1	2158000	+		38393	28015	28119	28351	37433	37433					0.008808942110817952
PDRSSSPPYLW	11	Unmodified	_PDRSSSPPYLW_					0	0	0			REV__ENST00000405837.5_1_11:62474765-62476674:-|nuORF	REV__ENST00000405837.5_1_11:62474765-62476674:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	435.9470520019531	3	435.547177	1303.6197	-0.4638	-0.00020201	1.9943	0.00086861	1.5305	0.00066661	435.547148083541	23.582	0.40663	23.582	23.432	23.838	0					20	7	5	0	0	0	0.67989	1	6528	6528		13.519	0	1	11682000	+		38394	24437	28120	28352	37434	37434					-0.019964058162031506
PDRTVSLQEN	10	Unmodified	_PDRTVSLQEN_					0	0	0		chr13:94411273-94443436|195|11.01|0.0|13.59|-|2|TE_info:MER1A,MER1A_dup2458,hAT-Charlie,DNA,acceptor,-,94411047,94411273|None,DCT|1	chr13:94411273-94443436|195|11.01|0.0|13.59|-|2|TE_info:MER1A,MER1A_dup2458,hAT-Charlie,DNA,acceptor,-,94411047,94411273|None,DCT|1	chr13:94411273-94443436|195|11.01|0.0|13.59|-|2|TE_info:MER1A,MER1A_dup2458,hAT-Charlie,DNA,acceptor,-,94411047,94411273|None,DCT|1	MULTI-SECPEP	A375_MHC_IP_R2	2	387.5865478515625	3	386.863165	1157.56767	-0.07107	-2.7495E-05	1.4128	0.00054656	1.3417	0.00051906	387.1982079209983	27.496	0.35532	28.174	27.996	28.351	0.67857					10	6	2	0	0	0	0.88918	1	9457	9457		5.0475	1.2016	1	2479900			38395	426	28121	28353	37435	37435					-0.004815692299416696
PDRWFKSLS	9	Unmodified	_PDRWFKSLS_					0	0	0			REV__ENST00000558512.5_2_15:60770196-60770778:-|nuORF	REV__ENST00000558512.5_2_15:60770196-60770778:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	378.9580078125	3	379.201341	1134.58219	0.60372	0.00022893	-1.7089	-0.00064803	-1.1052	-0.0004191	379.2011119773464	21.58	0.55859	21.58	21.25	21.808	0					14	10	2	0	0	0	0.73363	1	5737	5737		7.1017	6.1394	1	1641900	+		38396	26137	28122	28354	37436	37436					0.02028547708869155
PDRWLRFPHL	10	Unmodified	_PDRWLRFPHL_					0	0	0		ENST00000359197.9_1_7:50468535-50468640:+|nuORF	ENST00000359197.9_1_7:50468535-50468640:+|nuORF	ENST00000359197.9_1_7:50468535-50468640:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	668.556396484375	2	668.867289	1335.72002	-0.60235	-0.00040289	1.9827	0.0013262	1.3804	0.0009233	668.8672819089794	111.22	0.15491	111.96	111.85	112.01	0.73691					4	2	2	0	0	0	0.94227	1	41942	41942		5.2969	5.061	1	665930			38397	11010	28123	28355	37437	37437					0.06559296028126482
PDSCFCISCC	10	Unmodified	_PDSCFCISCC_					0	0	0		ENST00000372652.5_2_1:41175038-41175212:+|nuORF	ENST00000372652.5_2_1:41175038-41175212:+|nuORF	ENST00000372652.5_2_1:41175038-41175212:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1077.9364013671875	1	1077.35082	1076.34354	0.11953	0.00012878	1.0212	0.0011002	1.1407	0.001229	1077.3524970603871	120.13	0.71291	120.66	120.14	120.85	0.5321					23	13	3	0	0	0	0.94516	1	45855	45855		1.4819	0	1	51943000			38398	11208	28124	28356	37438	37438					-0.19157383243100412
PDSEIISHVR	10	Unmodified	_PDSEIISHVR_					0	0	0			REV__ENSG00000065526|ENST00000375759|SPEN	REV__ENSG00000065526|ENST00000375759|SPEN	MULTI-SECPEP	A375_MHC_IP_R2	2	385.24871826171875	3	384.871772	1151.59349	-0.40552	-0.00015607	-2.1656	-0.00083349	-2.5712	-0.00098957	384.8707844561577	19.389	0.20338	19.992	19.884	20.088	0.60308					5	3	2	0	0	0	0.93232	1	5909	5909		4.7159	3.7536	1	300090	+		38399	16500	28125	28357	37439	37439					0.023753250123490943
PDSIIMDL	8	Unmodified	_PDSIIMDL_					0	0	0			REV__nc|ENSG00000146966|Q9ULE3-2|DENND2A	REV__nc|ENSG00000146966|Q9ULE3-2|DENND2A	MULTI-MSMS	A375_MHC_IP_R2	2	904.418212890625	1	903.449196	902.44192	-0.23947	-0.00021635	2.3357	0.0021102	2.0962	0.0018938	903.452352861214	116.18	1.1196	116.84	116.11	117.23	0.65962					30	21	2	0	0	0	0.77488	1	43747	43747		13.508	0.97634	1	38615000	+		38400	19561	28126	28358	37440	37440					-0.013203723397509748
PDSKYKNLMV	10	Unmodified	_PDSKYKNLMV_					0	0	0		ENSG00000048707|ENST00000620676|VPS13D;nc|ENSG00000048707|Q5THJ4-2|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	MULTI-SECPEP	A375_MHC_IP_R2	2	398.2643737792969	3	398.877758	1193.61144	-0.41659	-0.00016617	0.078939	3.1487E-05	-0.33765	-0.00013468	398.87779695621003	22.659	0.3063	23.289	23.062	23.368	0.63014					9	5	2	0	0	0	0.93578	1	7198	7198		5.7834	0	1	795400			38401	1216	28127	28359	37441	37441					0.022383239427881563
PDSLERRDSLD	11	Unmodified	_PDSLERRDSLD_					0	0	0			REV__PCDHGB2|p.P681L|1|0.32|ENSG00000253910|chr5:141362177-141362177|C/T|missense_variant	REV__PCDHGB2|p.P681L|1|0.32|ENSG00000253910|chr5:141362177-141362177|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	434.67486572265625	3	434.880996	1301.62116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.362	1	67.362	66.862	67.862	0								0	0	0	0.16334	1	24409	24409		1.3296	0	1		+		38402	27743	28128	28360	37442	37442					-0.017588165180768556
PDSLLHLMVK	10	Unmodified	_PDSLLHLMVK_					0	0	0		chr15:31062702-31063088|359|36.81|0.04|9.93|-|ENST00000560801|TRPM1,TRPM1;nc|ENSG00000134160|Q7Z4N2-4|TRPM1;chr15:31076984-31101657|399|257.48|0.15|10.79|-|ENST00000560658|TRPM1,TRPM1;nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1	chr15:31062702-31063088|359|36.81|0.04|9.93|-|ENST00000560801|TRPM1,TRPM1	chr15:31062702-31063088|359|36.81|0.04|9.93|-|ENST00000560801|TRPM1,TRPM1	MULTI-SECPEP	A375_MHC_IP_R2	2	384.2863464355469	3	384.886365	1151.63727	-0.5093	-0.00019602	4.4104	0.0016975	3.9011	0.0015015	384.88870061408363	38.45	0.35399	39.225	39.047	39.401	0.77451					9	6	2	0	0	0	0.91909	1	14130	14130		3.0723	0	1	3191500			38403	436	28129	28361	37443	37443					0.06751218185104335
PDSPFPRSL	9	Unmodified	_PDSPFPRSL_					0	0	0			REV__NFATC4|p.P784S|1|0.65|ENSG00000100968|chr14:24376587-24376587|C/T|missense_variant	REV__NFATC4|p.P784S|1|0.65|ENSG00000100968|chr14:24376587-24376587|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	507.9803771972656	2	508.263999	1014.51345	-0.58169	-0.00029565	0.16263	8.266E-05	-0.41906	-0.00021299	508.2639037654568	39.973	0.30603	39.973	39.794	40.1	0					8	5	2	0	0	0	0.65246	1	13736	13736		10.824	0	1	1265700	+		38404	27597	28130	28362	37444	37444					0.006768834091303688
PDSPKRAYMS	10	Oxidation (M)	_PDSPKRAYM(Oxidation (M))S_		PDSPKRAYM(1)S		PDSPKRAYM(44)S	0	0	1		nc|ENSG00000116183|Q9BXP8-2|PAPPA2;ENSG00000116183|ENST00000367662|PAPPA2	nc|ENSG00000116183|Q9BXP8-2|PAPPA2	nc|ENSG00000116183|Q9BXP8-2|PAPPA2	MULTI-MSMS	A375_MHC_IP_R1	1	390.25244140625	3	389.853612	1166.53901	0.049695	1.9374E-05	-1.9086	-0.00074408	-1.8589	-0.00072471	389.8525167775991	19.546	0.45768	19.546	19.318	19.776	0					17	8	4	0	0	0	0.24749	1	4901	4901		44.392	26.529	1	6392300			38405	3380	28131	28363	37445	37445		166			-0.037600101307589284
PDSPRVKA	8	Unmodified	_PDSPRVKA_					0	0	0			REV__DYDC2|p.V21M|1|0.5|ENSG00000133665|chr10:80362504-80362504|G/A|missense_variant	REV__DYDC2|p.V21M|1|0.5|ENSG00000133665|chr10:80362504-80362504|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	435.2822265625	2	435.245609	868.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.668	1	22.287	21.787	22.787	0.61932								0	0	0	0.16876	1	6841	6841		9.3474	3.587	1		+		38406	16047	28132	28364	37446	37446					0.037166315832337204
PDSQITLYG	9	Unmodified	_PDSQITLYG_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;ENST00000482114.1_1_4:123130334-123145991:+|nuORF	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	A375_MHC_IP_R1	1	497.192138671875	2	497.248015	992.481476	-0.5344	-0.00026573	0.71336	0.00035472	0.17896	8.899E-05	497.24837607859865	80.698	0.76098	80.698	80.39	81.151	0					24	14	2	0	0	0	0.43185	1	29377	29377		23.148	6.2061	1	4019700			38407	5023	28133	28365	37447	37447					-0.015065290646703033
PDTAEEAGWG	10	Unmodified	_PDTAEEAGWG_					0	0	0			REV__ENST00000283243.12_2_2:160918962-160919091:-|nuORF	REV__ENST00000283243.12_2_2:160918962-160919091:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	517.0930786132812	2	516.717079	1031.4196	-0.59329	-0.00030656	-0.24184	-0.00012496	-0.83513	-0.00043152	516.7168754814029	85.572	0.8132	86.308	85.933	86.746	0.73602					34	15	4	0	0	0	0.91556	1	32586	32586		14.838	6.9281	1	17965000	+		38408	23328	28134	28366	37448	37448					-0.09484880483796587
PDTFAYFQL	9	Unmodified	_PDTFAYFQL_					0	0	0		nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB	nc|ENSG00000168477|P22105-1|TNXB	nc|ENSG00000168477|P22105-1|TNXB	MULTI-SECPEP	A375_MHC_IP_R1	1	368.2466735839844	3	367.846564	1100.51786	0.4713	0.00017337	-0.922	-0.00033916	-0.4507	-0.00016579	367.8461308905541	21.144	0.50722	21.144	20.844	21.352	0					11	9	2	0	0	0	0.69504	1	5570	5570		2.4985	0	1	935460			38409	7306	28135	28367	37449	37449					-0.028376521679547295
PDTHPIRRY	9	Unmodified	_PDTHPIRRY_					0	0	0			REV__ENSG00000185115|ENST00000332303|NSMCE3	REV__ENSG00000185115|ENST00000332303|NSMCE3	MSMS	A375_MHC_IP_R1	1	385.5855712890625	3	385.540357	1153.59924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.395	1	24.395	23.895	24.895	0								0	0	0	0.15486	1	6917	6917		4.897	0.36815	1		+		38410	21870	28136	28368	37450	37450					0.028584683146618772
PDTKWSRVT	9	Unmodified	_PDTKWSRVT_					0	0	0			REV__FREM2|p.R2048W|1|0.32|ENSG00000150893|chr13:38846695-38846695|C/T|missense_variant	REV__FREM2|p.R2048W|1|0.32|ENSG00000150893|chr13:38846695-38846695|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	364.6009521484375	3	363.861096	1088.56146	-0.12319	-4.4823E-05	0.12438	4.5257E-05	0.0011937	4.3436E-07	363.860955484987	29.087	0.20434	29.087	28.945	29.149	0					6	3	2	0	0	0	0.71341	1	9065	9065		8.9762	0	1	2551600	+		38411	26647	28137	28369	37451	37451					0.020719573291898996
PDTYRFYYWA	10	Unmodified	_PDTYRFYYWA_					0	0	0			REV__ENSG00000011376|ENST00000645846|LARS2	REV__ENSG00000011376|ENST00000645846|LARS2	MULTI-MSMS	A375_MHC_IP_R2	2	461.6121520996094	3	461.211906	1380.61389	-0.79944	-0.00036871	0.86519	0.00039904	0.065755	3.0327E-05	461.2122355677193	21.335	0.81125	21.954	21.575	22.387	0.61932					30	15	3	0	0	0	0.71455	1	6717	6717		5.7834	3.3486	1	6747600	+		38412	16207	28138	28370	37452	37452					-0.06119504327853065
PDVAKHELCQ	10	Unmodified	_PDVAKHELCQ_					0	0	0			REV__BCL2L14|p.E144K|1|0.37|ENSG00000121380|chr12:12079735-12079735|G/A|missense_variant	REV__BCL2L14|p.E144K|1|0.37|ENSG00000121380|chr12:12079735-12079735|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	379.92816162109375	3	380.521974	1138.54409	0.7401	0.00028162	2.468	0.00093914	3.2081	0.0012208	380.5230657869291	22.683	0.6588	22.683	22.164	22.823	0					30	12	3	0	0	0	0.91909	1	6153	6153		3.0723	0	1	5148200	+		38413	15504	28139	28371	37453	37453					-0.01963706268156784
PDVEEVNLYW	10	Unmodified	_PDVEEVNLYW_					0	0	0		TTLL7|p.R765W|1|0.4|ENSG00000137941|chr1:83890397-83890397|G/A|missense_variant	TTLL7|p.R765W|1|0.4|ENSG00000137941|chr1:83890397-83890397|G/A|missense_variant	TTLL7|p.R765W|1|0.4|ENSG00000137941|chr1:83890397-83890397|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	422.2962646484375	3	421.867916	1262.58192	0.02723	1.1487E-05	0.62993	0.00026575	0.65716	0.00027724	421.8680833703283	59.966	0.50855	59.966	59.701	60.21	0					12	9	2	0	0	0	0.9269	1	21649	21649		3.5871	1.9948	1	936710			38414	30094	28140	28372	37454	37454					-0.03886916801661755
PDVGGALNSLY	11	Unmodified	_PDVGGALNSLY_					0	0	0			REV__ENST00000333172.10_1_1:6639007-6639235:+|nuORF	REV__ENST00000333172.10_1_1:6639007-6639235:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	368.60491943359375	3	369.188989	1104.54514	-0.036326	-1.3411E-05	-1.6425	-0.00060639	-1.6788	-0.0006198	369.1883370866418	23.374	0.45484	24.005	23.878	24.333	0.63014					11	8	2	0	0	0	0.95991	1	7477	7477		4.4062	1.5629	1	3376900	+		38415	23645	28141	28373	37455	37455					-0.0029516862757645868
PDVGLPKVQW	10	Unmodified	_PDVGLPKVQW_					0	0	0			REV__ENST00000456916.5_1_16:57662548-57684184:+|nuORF	REV__ENST00000456916.5_1_16:57662548-57684184:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	380.91357421875	3	380.213358	1137.61824	-0.087841	-3.3398E-05	-0.23225	-8.8303E-05	-0.32009	-0.0001217	380.2131852666505	44.628	0.40574	45.398	45.188	45.594	0.76909					15	7	3	0	0	0	0.92603	1	16731	16731		5.7834	0	1	1073400	+		38416	24939	28142	28374	37456	37456					0.05494004885713366
PDVHQLVGEF	10	Unmodified	_PDVHQLVGEF_					0	0	0			REV__ENSG00000178997|ENST00000458580|EXD1	REV__ENSG00000178997|ENST00000458580|EXD1	MULTI-SECPEP	A375_MHC_IP_R1	1	571.17041015625	2	570.787838	1139.56112	-0.30619	-0.00017477	-0.91379	-0.00052158	-1.22	-0.00069635	570.7870910955123	77.38	0.45415	77.38	77.133	77.588	0					12	8	2	0	0	0	0.86608	1	28206	28206		10.8	0	1	2066400	+		38417	21533	28143	28375	37457	37457					-0.003074623906513807
PDVHTDVWFP	10	Unmodified	_PDVHTDVWFP_					0	0	0			REV__ENST00000532742.5_1_14:24684941-24685236:-|nuORF	REV__ENST00000532742.5_1_14:24684941-24685236:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	405.26080322265625	3	404.860984	1211.56112	-0.37939	-0.0001536	0.28255	0.00011439	-0.096844	-3.9208E-05	404.860923327642	59.484	0.45395	60.231	59.996	60.45	0.74714					20	8	3	0	0	0	0.93406	1	22516	22516		6.1918	0	1	2603200	+		38418	22635	28144	28376	37458	37458					-0.03619462390679473
PDVIHRLRK	9	Unmodified	_PDVIHRLRK_					0	0	0		ENSG00000182601|ENST00000331351|HS3ST4	ENSG00000182601|ENST00000331351|HS3ST4	ENSG00000182601|ENST00000331351|HS3ST4	MULTI-MSMS	A375_MHC_IP_R1	1	378.9398193359375	3	378.568247	1132.68291	0.038121	1.4431E-05	0.041605	1.575E-05	0.079726	3.0182E-05	378.5682768396951	23.508	0.71206	23.508	23.33	24.042	0					21	13	2	0	0	0	0.69317	1	6645	6645		7.609	7.609	1	25458000			38419	8422	28145	28377	37459	37459					0.1218762448236248
PDVKYVIDFC	10	Unmodified	_PDVKYVIDFC_					0	0	0		nc|ENSG00000156414|Q8NDG6-2|TDRD9;ENSG00000156414|ENST00000409874|TDRD9	nc|ENSG00000156414|Q8NDG6-2|TDRD9	nc|ENSG00000156414|Q8NDG6-2|TDRD9	MSMS	A375_MHC_IP_R1	1	400.1452331542969	3	400.198609	1197.574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.766	1	51.766	51.266	52.266	0								0	0	0	0.15265	1	18385	18385		7.4771	1.2427	1				38420	6191	28146	28378	37460	37460					-0.016887673227984124
PDVLEMDDLT	10	Unmodified	_PDVLEMDDLT_					0	0	0			REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	573.6951904296875	2	574.263004	1146.51146	-0.43809	-0.00025158	-2.4368	-0.0013994	-2.8749	-0.0016509	574.7637522667634	66.606	0.30692	66.606	66.529	66.836	0					6	5	2	0	0	0	0.8125	1	24128	24128		18.146	0	1	675500	+		38421	17561	28147	28379	37461	37461					-0.05593958181657399
PDWGPGVW	8	Unmodified	_PDWGPGVW_					0	0	0		nc|ENSG00000170909|Q8IYS5-6|OSCAR;nc|ENSG00000170909|Q8IYS5-2|OSCAR;ENSG00000170909|ENST00000358375|OSCAR;nc|ENSG00000170909|Q8IYS5-3|OSCAR;nc|ENSG00000170909|Q8IYS5-4|OSCAR;nc|ENSG00000170909|Q8IYS5-5|OSCAR;nc|ENSG00000170909|Q8IYS5|OSCAR;nc|ENSG00000170909|Q8IYS5-7|OSCAR	nc|ENSG00000170909|Q8IYS5-6|OSCAR	nc|ENSG00000170909|Q8IYS5-6|OSCAR	MSMS	A375_MHC_IP_R1	1	457.6141052246094	2	457.213778	912.413003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.269	1	16.269	15.769	16.769	0								0	0	0	0.16876	1	3783	3783		2.5775	0	1				38422	7558	28148	28380	37462	37462					-0.04670728853852779
PDWSDPPQV	9	Unmodified	_PDWSDPPQV_					0	0	0		ENSG00000198796|ENST00000361673|ALPK2;ENST00000590662.1_1_18:56246030-56247365:-|nuORF	ENSG00000198796|ENST00000361673|ALPK2	ENSG00000198796|ENST00000361673|ALPK2	MULTI-MSMS	A375_MHC_IP_R1	1	521.7001342773438	2	520.737814	1039.46108	-0.4965	-0.00025854	0.23678	0.0001233	-0.25972	-0.00013525	520.7378823151338	43.777	0.661	43.777	43.4	44.061	0					29	12	3	0	0	0	0.4867	1	15267	15267		20.454	6.9457	1	5610500			38423	9329	28149	28381	37463	37463					-0.057076997244848826
PDYDPKKDQNP	11	Unmodified	_PDYDPKKDQNP_					0	0	0		ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1;ENST00000554165.1_1_14:91850766-91884010:-|nuORF	ENSG00000187109|ENST00000618691|NAP1L1	ENSG00000187109|ENST00000618691|NAP1L1	MULTI-SECPEP	A375_MHC_IP_R2	2	440.2856140136719	3	439.542091	1315.60444	-0.59336	-0.00026081	-0.24469	-0.00010755	-0.83805	-0.00036836	439.8758883679407	23.627	0.30479	24.257	24.18	24.485	0.63014					6	5	2	0	0	0	0.99681	1	7741	7741		4.4062	0.28952	1	1223400			38424	8806	28150	28382	37464	37464					-0.04073317404049703
PDYFGEDSSY	10	Unmodified	_PDYFGEDSSY_					0	0	0			REV__ASCL1|p.S218F|1|0.23|ENSG00000139352|chr12:102958897-102958897|C/T|missense_variant	REV__ASCL1|p.S218F|1|0.23|ENSG00000139352|chr12:102958897-102958897|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	394.2218322753906	3	393.820743	1178.4404	0.26264	0.00010343	-0.75512	-0.00029738	-0.49248	-0.00019395	394.15454219683846	111.78	0.6097	111.78	111.52	112.13	0					34	11	4	0	0	0	0.70741	1	41041	41041		8.9762	3.1928	1	3162000	+		38425	15462	28151	28383	37465	37465					-0.1416833489477085
PDYINSLLAS	10	Unmodified	_PDYINSLLAS_					0	0	0		nc|ENSG00000113657|Q14195|DPYSL3;ENSG00000113657|ENST00000343218|DPYSL3	nc|ENSG00000113657|Q14195|DPYSL3	nc|ENSG00000113657|Q14195|DPYSL3	MULTI-MSMS	A375_MHC_IP_R1	1	547.1821899414062	2	546.782222	1091.54989	-0.48906	-0.00026741	0.28686	0.00015685	-0.2022	-0.00011056	546.7823263374065	98.107	1.679	98.107	97.743	99.422	0					96	32	5	0	0	0	0.21617	1	36431	36431		47.594	1.8948	1	48931000			38426	3173	28152	28384	37466	37466					0.007777155151870829
PDYKQVTNLY	10	Unmodified	_PDYKQVTNLY_					0	0	0			REV__ENSG00000179454|ENST00000396128|KLHL28	REV__ENSG00000179454|ENST00000396128|KLHL28	MULTI-SECPEP	A375_MHC_IP_R2	2	621.4786987304688	2	620.814053	1239.61355	-0.61483	-0.0003817	-0.39306	-0.00024402	-1.0079	-0.00062571	620.8138270936753	69.12	0.60786	69.855	69.474	70.082	0.73511					17	11	2	0	0	0	0.92514	1	26109	26109		12.241	8.9593	1	3332700	+		38427	21564	28153	28385	37467	37467					0.0033307595228961873
PDYRSFNRV	9	Unmodified	_PDYRSFNRV_					0	0	0		ENSG00000172399|ENST00000307128|MYOZ2	ENSG00000172399|ENST00000307128|MYOZ2	ENSG00000172399|ENST00000307128|MYOZ2	MULTI-SECPEP	A375_MHC_IP_R2	2	384.61187744140625	3	385.196478	1152.56761	-0.050375	-1.9404E-05	1.7357	0.00066858	1.6853	0.00064918	385.5320593892367	48.173	0.55287	48.932	48.68	49.233	0.75923					17	10	2	0	0	0	0.80005	1	18015	18015		0.23584	0.095952	1	1560800			38428	7708	28154	28386	37468	37468					-0.0025752443930286972
PDYTEVNDIRQ	11	Unmodified	_PDYTEVNDIRQ_					0	0	0			REV__KLHL6|p.N436D|1|0.27|ENSG00000172578|chr3:183494123-183494123|T/C|missense_variant	REV__KLHL6|p.N436D|1|0.27|ENSG00000172578|chr3:183494123-183494123|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	450.97723388671875	3	450.549246	1348.62591	-0.23044	-0.00010383	-0.24946	-0.0001124	-0.4799	-0.00021622	450.54899124755894	23.252	1.0144	23.252	22.773	23.787	0					35	12	4	0	0	0	0.99778	1	6306	6306		6.2344	6.2344	1	40944000	+		38429	26862	28155	28387	37469	37469					-0.03445932375348093
PDYTLTIWNW	10	Unmodified	_PDYTLTIWNW_					0	0	0		ENSG00000206530|ENST00000393845|CFAP44;nc|ENSG00000206530|Q96MT7-1|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	MSMS	A375_MHC_IP_R1	1	436.9380798339844	3	436.880156	1307.61864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.076	1	55.076	54.576	55.576	0								0	0	0	0.15365	1	19687	19687		8.9762	0	1				38430	9540	28156	28388	37470	37470					-0.022866201850774814
PDYTPMRNI	9	Unmodified	_PDYTPMRNI_					0	0	0		nc|ENSG00000167549|Q6QEF8|CORO6;ENSG00000167549|ENST00000388767|CORO6;ENST00000459686.5_1_17:27945497-27949916:-|nuORF	nc|ENSG00000167549|Q6QEF8|CORO6	nc|ENSG00000167549|Q6QEF8|CORO6	MULTI-MSMS	A375_MHC_IP_R2	2	369.4444580078125	3	369.51482	1105.52263	0.23366	8.6339E-05	0.044775	1.6545E-05	0.27843	0.00010288	369.51482032157656	27.113	0.307	27.792	27.638	27.945	0.67857					8	5	2	0	0	0	0.64808	1	9225	9225		7.609	0	1	957070			38431	7194	28157	28389	37471	37471					-0.02591091296835657
PEAAQELDD	9	Unmodified	_PEAAQELDD_					0	0	0			REV__ENSG00000198576|ENST00000356613|ARC	REV__ENSG00000198576|ENST00000356613|ARC	MSMS	A375_MHC_IP_R1	1	494.1792297363281	2	494.216911	986.41927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.726	1	93.726	93.226	94.226	0								0	0	0	0.15142	1	34451	34451		19.257	2.3147	1		+		38432	22384	28158	28390	37472	37472					-0.07448300203657254
PEAAQELDD	9	Unmodified	_PEAAQELDD_					0	0	0			REV__ENSG00000198576|ENST00000356613|ARC	REV__ENSG00000198576|ENST00000356613|ARC	MSMS	A375_MHC_IP_R2	2	494.17926025390625	2	494.216911	986.41927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.899	1	93.638	93.138	94.138	0.73902								0	0	0	0.15142	1	35323	35323		19.257	2.3147	1		+		38433	22384	28158	28390	37473	37473					-0.07448300203657254
PEADYHEFL	9	Unmodified	_PEADYHEFL_					0	0	0		nc|ENSG00000174844|Q6ZR08|DNAH12;ENSG00000174844|ENST00000495027|DNAH12	nc|ENSG00000174844|Q6ZR08|DNAH12	nc|ENSG00000174844|Q6ZR08|DNAH12	MULTI-MSMS	A375_MHC_IP_R2	2	560.7000122070312	2	560.750921	1119.48729	-0.64264	-0.00036036	0.090181	5.0569E-05	-0.55246	-0.00030979	560.7509103525941	72.973	0.56053	73.709	73.429	73.99	0.73541					17	10	3	0	0	0	0.64808	1	27610	27610		11.64	1.4569	1	2446400			38434	7909	28159	28391	37474	37474					-0.06767430553009035
PEAEAEPEL	9	Unmodified	_PEAEAEPEL_					0	0	0			REV__nc|ENSG00000140939|O60936|NOL3	REV__nc|ENSG00000140939|O60936|NOL3	MULTI-SECPEP	A375_MHC_IP_R1	1	493.1296691894531	2	492.729655	983.444756	-0.51518	-0.00025385	0.30792	0.00015172	-0.20726	-0.00010212	492.72975232690294	53.033	0.75993	53.033	52.694	53.453	0					30	14	3	0	0	0	0.030624	1	18848	18848		88.904	0	1	8524800	+		38435	27265	28160	28392	37475	37475					-0.047628256812231484
PEAEKERIRIY	11	Unmodified	_PEAEKERIRIY_					0	0	0		nc|ENSG00000187624|Q6ZQX7-2|LIAT1;ENSG00000187624|ENST00000360127|C17orf97;nc|ENSG00000187624|Q6ZQX7-3|LIAT1;nc|ENSG00000187624|Q6ZQX7|LIAT1	nc|ENSG00000187624|Q6ZQX7-2|LIAT1	nc|ENSG00000187624|Q6ZQX7-2|LIAT1	MSMS	A375_MHC_IP_R1	1	468.65081787109375	3	468.592898	1402.75686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.243	1	58.243	57.743	58.743	0								0	0	0	0.16191	1	20918	20918		8.7518	5.6795	1				38436	8842	28161	28393	37476	37476					0.0715950306337163
PEAPAREL	8	Unmodified	_PEAPAREL_					0	0	0			REV__nc|ENSG00000143379|Q15047-3|SETDB1	REV__nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-SECPEP	A375_MHC_IP_R2	2	442.1373291015625	2	441.737617	881.460681	-0.42586	-0.00018812	-0.076215	-3.3667E-05	-0.50207	-0.00022178	441.737547391192	55.608	0.65992	56.358	56.034	56.694	0.75075					29	12	3	0	0	0	0.84294	1	20961	20961		30.637	3.7529	1	11548000	+		38437	19352	28162	28394	37477	37477					0.015209253463240202
PEAWGATFEV	10	Unmodified	_PEAWGATFEV_					0	0	0			REV__ENSG00000185274|ENST00000333538|GALNT17	REV__ENSG00000185274|ENST00000333538|GALNT17	MULTI-MSMS	A375_MHC_IP_R2	2	554.1593017578125	2	553.761289	1105.50803	-0.81168	-0.00044948	-2.1576	-0.0011948	-2.9693	-0.0016443	553.7596395218669	30.278	0.50732	30.996	30.809	31.317	0.71857					19	9	3	0	0	0	0.55789	1	10657	10657		24.021	1.2843	1	2743000	+		38438	21885	28163	28395	37478	37478					-0.04050840173340475
PECCCCGEDEE	11	Unmodified	_PECCCCGEDEE_					0	0	0			REV__nc|ENSG00000197136|Q9H6A9-3|PCNX3	REV__nc|ENSG00000197136|Q9H6A9-3|PCNX3	MSMS	A375_MHC_IP_R2	2	608.7113037109375	2	608.666699	1215.31885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.702	1	83.445	82.945	83.945	0.74293								0	0	0	0.1636	1	31418	31418		0	0	1		+		38439	22260	28164	28396	37479	37479					-0.28020107907150305
PECCCCGEDEE	11	Unmodified	_PECCCCGEDEE_					0	0	0			REV__nc|ENSG00000197136|Q9H6A9-3|PCNX3	REV__nc|ENSG00000197136|Q9H6A9-3|PCNX3	MSMS	A375_MHC_IP_R2	2	608.6912231445312	2	608.666699	1215.31885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.82	1	106.58	106.08	107.08	0.75977								0	0	0	0.1636	1	40013	40013		0	0	1		+		38440	22260	28164	28396	37480	37480					-0.28020107907150305
PECCCFGE	8	Unmodified	_PECCCFGE_					0	0	0			REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	MSMS	A375_MHC_IP_R1	1	444.16436767578125	2	444.140249	886.265946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.6	1	105.6	105.1	106.1	0								0	0	0	0.16876	1	38768	38768		0	0	1		+		38441	17118	28165	28397	37481	37481					-0.18173653116969035
PECCCFGE	8	Unmodified	_PECCCFGE_					0	0	0			REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	MSMS	A375_MHC_IP_R1	1	444.1646423339844	2	444.140249	886.265946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.31	1	107.31	106.81	107.81	0								0	0	0	0.16876	1	39380	39380		0	0	1		+		38442	17118	28165	28397	37482	37482					-0.18173653116969035
PECCHCCC	8	Unmodified	_PECCHCCC_					0	0	0			REV__ENSG00000204887|ENST00000377747|KRTAP1-4	REV__ENSG00000204887|ENST00000377747|KRTAP1-4	MSMS	A375_MHC_IP_R1	1	449.13641357421875	2	449.112654	896.210756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.985	1	40.985	40.485	41.485	0								0	0	0	0.16876	1	14124	14124		0.69038	0.69038	1		+		38443	22547	28166	28398	37483	37483					-0.24150106180763942
PECCHCCC	8	Unmodified	_PECCHCCC_					0	0	0			REV__ENSG00000204887|ENST00000377747|KRTAP1-4	REV__ENSG00000204887|ENST00000377747|KRTAP1-4	MSMS	A375_MHC_IP_R1	1	449.1267395019531	2	449.112654	896.210756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.348	1	87.348	86.848	87.848	0								0	0	0	0.16876	1	32048	32048		2.5775	2.5775	1		+		38444	22547	28166	28398	37484	37484					-0.24150106180763942
PECCHCCC	8	Unmodified	_PECCHCCC_					0	0	0			REV__ENSG00000204887|ENST00000377747|KRTAP1-4	REV__ENSG00000204887|ENST00000377747|KRTAP1-4	MSMS	A375_MHC_IP_R1	1	449.1188659667969	2	449.112654	896.210756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.261	1	92.261	91.761	92.761	0								0	0	0	0.16876	1	33905	33905		0.79363	0.79363	1		+		38445	22547	28166	28398	37485	37485					-0.24150106180763942
PECCHCCC	8	Unmodified	_PECCHCCC_					0	0	0			REV__ENSG00000204887|ENST00000377747|KRTAP1-4	REV__ENSG00000204887|ENST00000377747|KRTAP1-4	MULTI-SECPEP	A375_MHC_IP_R1	1	896.6614990234375	1	897.218032	896.210756	-0.22875	-0.00020524	-2.5705	-0.0023063	-2.7992	-0.0025115	897.2166492817879	119.21	0.30206	119.21	118.98	119.28	0					7	5	2	0	0	0	0.972	1	44037	44037		0.79363	0.79363	1	14488000	+		38446	22547	28166	28398	37486	37486					-0.24150106180763942
PECCHCCC	8	Unmodified	_PECCHCCC_					0	0	0			REV__ENSG00000204887|ENST00000377747|KRTAP1-4	REV__ENSG00000204887|ENST00000377747|KRTAP1-4	MSMS	A375_MHC_IP_R2	2	449.1363525390625	2	449.112654	896.210756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.175	1	40.949	40.449	41.449	0.77451								0	0	0	0.16876	1	14867	14867		0.69038	0.69038	1		+		38447	22547	28166	28398	37487	37487					-0.24150106180763942
PECCHCCC	8	Unmodified	_PECCHCCC_					0	0	0			REV__ENSG00000204887|ENST00000377747|KRTAP1-4	REV__ENSG00000204887|ENST00000377747|KRTAP1-4	MSMS	A375_MHC_IP_R2	2	449.1270446777344	2	449.112654	896.210756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.459	1	87.192	86.692	87.692	0.733								0	0	0	0.16876	1	32880	32880		2.5775	2.5775	1		+		38448	22547	28166	28398	37488	37488					-0.24150106180763942
PECELGTTPTL	11	Unmodified	_PECELGTTPTL_					0	0	0			REV__ENSG00000165899|ENST00000547103|OTOGL	REV__ENSG00000165899|ENST00000547103|OTOGL	MSMS	A375_MHC_IP_R2	2	387.4449768066406	3	387.52164	1159.54309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.52	1	39.295	38.795	39.795	0.77451								0	0	0	0.16249	1	14184	14184		2.6312	0	1		+		38449	20635	28167	28399	37489	37489					-0.030299654276859656
PECGFYGMY	9	Unmodified	_PECGFYGMY_					0	0	0		ENSG00000184304|ENST00000331968|PRKD1	ENSG00000184304|ENST00000331968|PRKD1	ENSG00000184304|ENST00000331968|PRKD1	MSMS	A375_MHC_IP_R2	2	533.6578979492188	2	533.704071	1065.39359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.269	1	61.014	60.514	61.514	0.74503								0	0	0	0.15486	1	22813	22813		7.9102	0	1				38450	8568	28168	28400	37490	37490					-0.13649189251282223
PEDEVDIGDEG	11	Unmodified	_PEDEVDIGDEG_					0	0	0		ENSG00000188909|ENST00000343035|BSX	ENSG00000188909|ENST00000343035|BSX	ENSG00000188909|ENST00000343035|BSX	MSMS	A375_MHC_IP_R1	1	587.726806640625	2	587.740948	1173.46734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.834	1	87.834	87.334	88.334	0								0	0	0	0.16258	1	32236	32236		5.2969	0.96765	1				38451	8946	28169	28401	37491	37491					-0.11245271074267293
PEDLNYEEPN	10	Unmodified	_PEDLNYEEPN_					0	0	0			REV__nc|ENSG00000135250|P78362|SRPK2	REV__nc|ENSG00000135250|P78362|SRPK2	MULTI-MSMS	A375_MHC_IP_R1	1	610.6586303710938	2	610.259308	1218.50406	-0.62662	-0.0003824	0.36298	0.00022151	-0.26364	-0.00016089	610.2596103220369	41.615	0.76502	41.615	41.317	42.082	0					26	14	3	0	0	0	0.66857	1	14396	14396		15.739	1.3332	1	3724100	+		38452	18836	28170	28402	37492	37492					-0.09644974457705757
PEDLNYEEPN	10	Unmodified	_PEDLNYEEPN_					0	0	0			REV__nc|ENSG00000135250|P78362|SRPK2	REV__nc|ENSG00000135250|P78362|SRPK2	MULTI-MSMS	A375_MHC_IP_R2	2	610.6588134765625	2	610.259308	1218.50406	-0.73349	-0.00044762	0.17417	0.00010629	-0.55932	-0.00034133	610.2593732459468	41.086	0.60864	41.86	41.59	42.198	0.77451					17	9	2	0	0	0	0.70174	1	15217	15217		11.518	11.518	1	3873200	+		38453	18836	28170	28402	37493	37493					-0.09644974457705757
PEDLNYEEPN	10	Unmodified	_PEDLNYEEPN_					0	0	0			REV__nc|ENSG00000135250|P78362|SRPK2	REV__nc|ENSG00000135250|P78362|SRPK2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	610.259308	1218.50406	-0.62662	-0.0003824	0.36298	0.00022151	-0.26364	-0.00016089	610.2596103220369	41.615	0.76502	41.615	41.317	42.082	0	-0.1227	0.00016445	NaN	15.739	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3724100	+		38454	18836	28170	28402							-0.09644974457705757
PEDLNYEEPN	10	Unmodified	_PEDLNYEEPN_					0	0	0			REV__nc|ENSG00000135250|P78362|SRPK2	REV__nc|ENSG00000135250|P78362|SRPK2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	610.259308	1218.50406	-0.73349	-0.00044762	0.17417	0.00010629	-0.55932	-0.00034133	610.2593732459468	41.086	0.60864	41.86	41.59	42.198	0.77451	0.1227	-6.5999E-05	NaN	15.739	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3873200	+		38455	18836	28170	28402							-0.09644974457705757
PEDLRDPFY	9	Unmodified	_PEDLRDPFY_					0	0	0		ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	576.184326171875	2	576.272021	1150.52949	-0.29408	-0.00016947	-0.59246	-0.00034142	-0.88654	-0.00051089	576.2713384121884	86.956	0.55814	86.956	86.73	87.289	0					17	10	2	0	0	0	0.60917	1	31820	31820		13.906	0	1	1765900			38456	4255	28171	28403	37494	37494					-0.03975455144609441
PEDLTQDFEEM	11	Unmodified	_PEDLTQDFEEM_					0	0	0		nc|ENSG00000166963|P78559-2|MAP1A;ENSG00000166963|ENST00000300231|MAP1A	nc|ENSG00000166963|P78559-2|MAP1A	nc|ENSG00000166963|P78559-2|MAP1A	MULTI-SECPEP	A375_MHC_IP_R2	2	677.6771850585938	2	677.279383	1352.54421	-0.82439	-0.00055834	-2.3468	-0.0015894	-3.1712	-0.0021478	677.2773220777084	96.822	0.40329	97.578	97.419	97.822	0.75586					11	7	2	0	0	0	0.99738	1	36790	36790		5.2969	2.5617	1	1279600			38457	7142	28172	28404	37495	37495					-0.11795795849457136
PEDLTQDFEEM	11	Unmodified	_PEDLTQDFEEM_					0	0	0		nc|ENSG00000166963|P78559-2|MAP1A;ENSG00000166963|ENST00000300231|MAP1A	nc|ENSG00000166963|P78559-2|MAP1A	nc|ENSG00000166963|P78559-2|MAP1A	MULTI-MATCH	A375_MHC_IP_R1	1		2	677.279383	1352.54421	-0.55002	-0.00037252	-1.8396	-0.0012459	-2.3896	-0.0016184	677.2775774133523	97.459	0.4032	97.459	97.187	97.59	0	-0.059347	0.00034744	NaN	5.2969	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1372500			38458	7142	28172	28404							-0.11795795849457136
PEDNQVLQY	9	Unmodified	_PEDNQVLQY_					0	0	0		ENST00000484452.1_1_7:108206198-108210073:-|nuORF	ENST00000484452.1_1_7:108206198-108210073:-|nuORF	ENST00000484452.1_1_7:108206198-108210073:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	553.6612548828125	2	553.261653	1104.50875	-0.91702	-0.00050735	0.56202	0.00031094	-0.355	-0.00019641	553.2618145042832	33.083	0.35686	33.835	33.635	33.992	0.75225					13	6	3	0	0	0	0.34064	1	11854	11854		27.629	4.8925	1	2543400			38459	12563	28173	28405	37496	37496					-0.03932045524265959
PEDPRSLEY	9	Unmodified	_PEDPRSLEY_					0	0	0		ENST00000450649.6_1_11:9055180-9055240:-|nuORF	ENST00000450649.6_1_11:9055180-9055240:-|nuORF	ENST00000450649.6_1_11:9055180-9055240:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	368.90521240234375	3	369.176861	1104.50875	0.017135	6.3258E-06	-0.91633	-0.00033829	-0.8992	-0.00033196	369.1769520641943	23.771	0.66052	23.771	23.584	24.245	0					24	12	3	0	0	0	0.75519	1	6598	6598		6.6304	0.43853	1	12225000			38460	12068	28174	28406	37497	37497					-0.039320455242886965
PEDPRSLEY	9	Unmodified	_PEDPRSLEY_					0	0	0		ENST00000450649.6_1_11:9055180-9055240:-|nuORF	ENST00000450649.6_1_11:9055180-9055240:-|nuORF	ENST00000450649.6_1_11:9055180-9055240:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	368.9049072265625	3	369.176861	1104.50875	-0.075998	-2.8057E-05	-1.1451	-0.00042274	-1.2211	-0.00045079	369.1766769524895	22.955	0.56148	23.585	23.317	23.878	0.63014					25	10	4	0	0	0	0.59614	1	7357	7357		17.443	7.2921	1	7692100			38461	12068	28174	28406	37498	37498					-0.039320455242886965
PEDTTRKYKP	10	Unmodified	_PEDTTRKYKP_					0	0	0		ENSG00000128594|ENST00000249363|LRRC4	ENSG00000128594|ENST00000249363|LRRC4	ENSG00000128594|ENST00000249363|LRRC4	MULTI-MSMS	A375_MHC_IP_R1	1	412.6192626953125	3	412.21906	1233.63535	0.38884	0.00016029	0.069899	2.8814E-05	0.45874	0.0001891	412.5535393245643	21.277	1.1704	21.277	20.587	21.757	0					37	22	2	0	0	0	0.70793	1	5426	5426		5.0475	0.93089	1	1556000			38462	4150	28175	28407	37499	37499					0.027878807008619333
PEDYVFGVDI	10	Unmodified	_PEDYVFGVDI_					0	0	0			REV__nc|ENSG00000138119|Q9NZM1-5|MYOF	REV__nc|ENSG00000138119|Q9NZM1-5|MYOF	MULTI-SECPEP	A375_MHC_IP_R1	1	576.906982421875	2	577.274229	1152.53391	-0.13169	-7.602E-05	-0.34496	-0.00019913	-0.47664	-0.00027515	577.2739844000004	104.5	0.75879	104.5	104.24	104.99	0					22	14	2	0	0	0	0.72086	1	38386	38386		24.021	0.87215	1	1546100	+		38463	19067	28176	28408	37500	37500					-0.03625990721684502
PEEDYDPGYF	10	Unmodified	_PEEDYDPGYF_					0	0	0		ENSG00000132694|ENST00000368194|ARHGEF11;nc|ENSG00000132694|O15085|ARHGEF11	ENSG00000132694|ENST00000368194|ARHGEF11	ENSG00000132694|ENST00000368194|ARHGEF11	MSMS	A375_MHC_IP_R2	2	616.06494140625	2	616.243126	1230.4717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.36	1	103.12	102.62	103.62	0.76428								0	0	0	0.15207	1	38786	38786		13.906	0.86358	1				38464	4442	28177	28409	37501	37501					-0.13431761860715596
PEEIKPQSHY	10	Unmodified	_PEEIKPQSHY_					0	0	0		ENSG00000186908|ENST00000426126|ZDHHC17;nc|ENSG00000186908|Q8IUH5-3|ZDHHC17	ENSG00000186908|ENST00000426126|ZDHHC17	ENSG00000186908|ENST00000426126|ZDHHC17	MULTI-SECPEP	A375_MHC_IP_R1	1	409.560791015625	3	409.87166	1226.59315	-0.37132	-0.00015219	0.92009	0.00037712	0.54877	0.00022493	409.8722380615767	41.629	0.25451	41.629	41.419	41.674	0					8	4	2	0	0	0	0.93578	1	14365	14365		3.3196	2.4553	1	836500			38465	8790	28178	28410	37502	37502					-0.011080947075242875
PEELAFGEVQI	11	Unmodified	_PEELAFGEVQI_					0	0	0		nc|ENSG00000168405|Q9Y471-4|CMAHP;nc|ENSG00000168405|Q9Y471|CMAHP	nc|ENSG00000168405|Q9Y471-4|CMAHP	nc|ENSG00000168405|Q9Y471-4|CMAHP	MSMS	A375_MHC_IP_R2	2	616.3115844726562	2	616.313886	1230.61322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.46	1	119.07	118.57	119.57	0.60909								0	0	0	0.16124	1	44974	44974		12.241	1.4411	1				38466	14754	28179	28411	37503	37503					0.007136562324376428
PEEMLKLRPG	10	Unmodified	_PEEMLKLRPG_					0	0	0		ENSG00000116128|ENST00000234739|BCL9	ENSG00000116128|ENST00000234739|BCL9	ENSG00000116128|ENST00000234739|BCL9	MULTI-SECPEP	A375_MHC_IP_R2	2	584.716796875	2	585.320991	1168.62743	-0.53752	-0.00031462	-2.569	-0.0015037	-3.1065	-0.0018183	585.3195554693896	40.028	0.55873	40.803	40.371	40.93	0.77451					11	10	2	0	0	0	0.74754	1	14793	14793		29.082	14.243	1	1960200			38467	3372	28180	28412	37504	37504					0.04986030179725276
PEENHLENYT	10	Unmodified	_PEENHLENYT_					0	0	0		ENST00000339020.7_1_5:60455674-60455758:-|nuORF	ENST00000339020.7_1_5:60455674-60455758:-|nuORF	ENST00000339020.7_1_5:60455674-60455758:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	416.60675048828125	3	415.850925	1244.53095	-0.31833	-0.00013238	1.7569	0.00073059	1.4385	0.00059821	415.85074919982145	23.374	0.45565	24.005	23.928	24.384	0.63014					10	8	2	0	0	0	0.93578	1	7595	7595		3.3196	0	1	2363600			38468	10841	28181	28413	37505	37505					-0.08153865846520603
PEEQLTRLTWW	11	Unmodified	_PEEQLTRLTWW_					0	0	0		ENSG00000117834|ENST00000438567|SLC5A9;nc|ENSG00000117834|Q2M3M2-3|SLC5A9;nc|ENSG00000117834|Q2M3M2-2|SLC5A9	ENSG00000117834|ENST00000438567|SLC5A9	ENSG00000117834|ENST00000438567|SLC5A9	MSMS	A375_MHC_IP_R2	2	729.8718872070312	2	729.872434	1457.73031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.847	1	55.597	55.097	56.097	0.75075								0	0	0	0.16249	1	20707	20707		5.7319	0.43497	1				38469	3513	28182	28414	37506	37506					0.019758141720103595
PEERCRRAGS	10	Unmodified	_PEERCRRAGS_					0	0	0		ENST00000502726.5_1_4:47685742-47840047:-|nuORF;ENST00000503821.5_1_4:47663725-47840047:-|nuORF;ENSG00000145244|ENST00000273857|CORIN	ENST00000502726.5_1_4:47685742-47840047:-|nuORF	ENST00000502726.5_1_4:47685742-47840047:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	580.1491088867188	2	580.783096	1159.55164	-0.23662	-0.00013743	-0.62813	-0.00036481	-0.86475	-0.00050223	580.7828609731417	25.408	0.30706	25.408	25.255	25.562	0					8	5	2	0	0	0	0.91442	1	7351	7351		4.5289	1.7937	1	1289900			38470	5546	28183	28415	37507	37507					-0.021755539478590435
PEERESTEATQ	11	Unmodified	_PEERESTEATQ_					0	0	0		nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L	nc|ENSG00000116580|Q3T8J9-3|GON4L	nc|ENSG00000116580|Q3T8J9-3|GON4L	MULTI-MSMS	A375_MHC_IP_R2	2	639.1854858398438	2	638.786221	1275.55789	-0.94049	-0.00060077	-1.649	-0.0010534	-2.5895	-0.0016541	638.7851033276407	41.334	1.0169	42.108	41.692	42.709	0.77451					58	19	4	0	0	0	0.58825	1	15363	15363		35.612	3.5748	1	9843900			38471	3407	28184	28416	37508	37508					-0.06886802025996985
PEERRGDPYMH	11	Unmodified	_PEERRGDPYMH_					0	0	0			REV__nc|ENSG00000238222|Q13434|MKRN4P	REV__nc|ENSG00000238222|Q13434|MKRN4P	MSMS	A375_MHC_IP_R2	2	693.9488525390625	2	693.814593	1385.61463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.55	1	119.16	118.66	119.66	0.60909								0	0	0	0.16258	1	45018	45018		5.2969	0	1		+		38472	27515	28185	28417	37509	37509					-0.06275032950452442
PEEWECLDP	9	Unmodified	_PEEWECLDP_					0	0	0		nc|ENSG00000197472|Q8IW36-3|ZNF695;nc|ENSG00000197472|Q8IW36-2|ZNF695;nc|ENSG00000197472|Q8IW36-1|ZNF695;ENSG00000197472|ENST00000339986|ZNF695	nc|ENSG00000197472|Q8IW36-3|ZNF695	nc|ENSG00000197472|Q8IW36-3|ZNF695	MSMS	A375_MHC_IP_R1	1	559.1695556640625	2	559.228965	1116.44338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.627	1	68.627	68.127	69.127	0								0	0	0	0.15283	1	24889	24889		16.942	9.0321	1				38473	9163	28186	28418	37510	37510					-0.11018783041663482
PEEWECLDP	9	Unmodified	_PEEWECLDP_					0	0	0		nc|ENSG00000197472|Q8IW36-3|ZNF695;nc|ENSG00000197472|Q8IW36-2|ZNF695;nc|ENSG00000197472|Q8IW36-1|ZNF695;ENSG00000197472|ENST00000339986|ZNF695	nc|ENSG00000197472|Q8IW36-3|ZNF695	nc|ENSG00000197472|Q8IW36-3|ZNF695	MSMS	A375_MHC_IP_R2	2	559.1697998046875	2	559.228965	1116.44338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.968	1	68.704	68.204	69.204	0.73511								0	0	0	0.15283	1	25758	25758		16.942	3.0362	1				38474	9163	28186	28418	37511	37511					-0.11018783041663482
PEEYDQPW	8	Unmodified	_PEEYDQPW_					0	0	0		nc|ENSG00000138606|Q7M4L6-2|SHF;nc|ENSG00000138606|Q7M4L6|SHF;ENSG00000138606|ENST00000690270|SHF;ENST00000561091.1_1_15:45466604-45470396:-|nuORF	nc|ENSG00000138606|Q7M4L6-2|SHF	nc|ENSG00000138606|Q7M4L6-2|SHF	MULTI-SECPEP	A375_MHC_IP_R1	1	1062.9298095703125	1	1063.43672	1062.42944	-0.26558	-0.00028243	1.5607	0.0016598	1.2952	0.0013773	1063.440042906449	121.54	1.2705	121.54	121.16	122.43	0					30	21	2	0	0	0	0.972	1	45402	45402		13.508	0	1	88368000			38475	5006	28187	28419	37512	37512					-0.09927692478436256
PEFHYVDVVPP	11	Unmodified	_PEFHYVDVVPP_					0	0	0		NPHS1|p.G984E|1|0.23|ENSG00000161270|chr19:35839395-35839395|C/T|missense_variant	NPHS1|p.G984E|1|0.23|ENSG00000161270|chr19:35839395-35839395|C/T|missense_variant	NPHS1|p.G984E|1|0.23|ENSG00000161270|chr19:35839395-35839395|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	650.2236938476562	2	649.824421	1297.63429	-1.067	-0.00069339	-0.083949	-5.4552E-05	-1.151	-0.00074794	649.8242410842788	22.423	0.51188	23.042	22.846	23.358	0.61932					14	9	3	0	0	0	0.72877	1	7145	7145		10.074	1.3285	1	2151600			38476	15021	28188	28420	37513	37513					-0.00262333668069914
PEFLRQLSQ	9	Unmodified	_PEFLRQLSQ_					0	0	0			REV__ENSG00000130054|ENST00000252338|NALF2	REV__ENSG00000130054|ENST00000252338|NALF2	MULTI-SECPEP	A375_MHC_IP_R1	1	373.3047180175781	3	373.204862	1116.59276	0.32346	0.00012072	-0.37159	-0.00013868	-0.048135	-1.7964E-05	373.20496290348046	31.923	0.46039	31.923	31.667	32.127	0					13	8	2	0	0	0	0.76452	1	10243	10243		12.241	12.241	1	1322900	+		38477	18516	28189	28421	37514	37514					0.03912530363277256
PEGEETEFY	9	Unmodified	_PEGEETEFY_					0	0	0		ENSG00000101152|ENST00000360864|DNAJC5;nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	MSMS	A375_MHC_IP_R1	1	550.6703491210938	2	550.724569	1099.43459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.6	1	79.6	79.1	80.1	0								0	0	0	0.14905	1	29058	29058		23.148	5.0134	1				38478	2256	28190	28422	37515	37515					-0.11115433406439479
PEGETLRSTF	10	Unmodified	_PEGETLRSTF_					0	0	0		ENSG00000204815|ENST00000377540|ODAD4;nc|ENSG00000204815|Q96NG3-2|ODAD4	ENSG00000204815|ENST00000377540|ODAD4	ENSG00000204815|ENST00000377540|ODAD4	MSMS	A375_MHC_IP_R1	1	568.6748046875	2	568.782753	1135.55095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.454	1	56.454	55.954	56.954	0								0	0	0	0.15245	1	20225	20225		14.838	0	1				38479	9480	28191	28423	37516	37516					-0.011400701159118398
PEGGDPAH	8	Unmodified	_PEGGDPAH_					0	0	0		ENST00000530857.1_1_17:72959162-72968794:-|nuORF;ENST00000425042.6_1_17:72960710-72968794:-|nuORF	ENST00000530857.1_1_17:72959162-72968794:-|nuORF	ENST00000530857.1_1_17:72959162-72968794:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	779.6350708007812	1	779.331858	778.324582	-0.73725	-0.00057456	-3.7363	-0.0029118	-4.4736	-0.0034864	779.333390559219	124.67	0.25385	124.67	124.54	124.8	0					5	4	2	0	0	0	0.972	1	47122	47122		2.5775	0	1	11925000			38480	11784	28192	28424	37517	37517					-0.07344769164330955
PEGIGQNLDA	10	Unmodified	_PEGIGQNLDA_					0	0	0			REV__ENSG00000142634|ENST00000375980|EFHD2	REV__ENSG00000142634|ENST00000375980|EFHD2	MULTI-MSMS	A375_MHC_IP_R1	1	508.6766662597656	2	507.248546	1012.48254	-0.57638	-0.00029237	-0.47727	-0.00024209	-1.0537	-0.00053446	507.2482297420021	86.602	1.0135	86.602	86.172	87.186	0					46	19	4	0	0	0	0.6502	1	31743	31743		17.113	0	1	25166000	+		38481	19316	28193	28425	37518	37518					-0.02320314695759862
PEGNLTLSY	9	Unmodified	_PEGNLTLSY_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;USH2A|p.V2904Tfs*33|1|0.04|ENSG00000042781|chr1:215867142-215867143|CG/-|frameshift_variant;nc|ENSG00000042781|O75445-2|USH2A	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	A375_MHC_IP_R1	1	993.8577270507812	1	993.488753	992.481476	0.34451	0.00034226	0.0050464	5.0136E-06	0.34955	0.00034728	993.4884726354755	79.177	0.4577	79.177	78.859	79.316	0					13	8	2	0	0	0	0.53748	1	28814	28814		30.637	3.7529	1	1272500			38482	1177	28194	28426	37519	37519					-0.015065290646589347
PEGPYPRKI	9	Unmodified	_PEGPYPRKI_					0	0	0			REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	MULTI-SECPEP	A375_MHC_IP_R1	1	352.36968994140625	3	352.86607	1055.57638	-0.12466	-4.3989E-05	-0.93655	-0.00033048	-1.0612	-0.00037447	352.8660179350584	24.878	0.20378	24.878	24.749	24.953	0					5	3	2	0	0	0	0.62767	1	7099	7099		7.609	0	1	879790	+		38483	17518	28195	28427	37520	37520					0.0508144919717779
PEGPYPRKI	9	Unmodified	_PEGPYPRKI_					0	0	0			REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	MULTI-MATCH	A375_MHC_IP_R2	2		3	352.86607	1055.57638	-0.47084	-0.00016614	-0.43647	-0.00015401	-0.90731	-0.00032016	352.86605823710147	24.031	0.15411	24.673	24.549	24.703	0.64245	-0.10227	0.00015764	NaN	7.609	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3563400	+		38484	17518	28195	28427							0.0508144919717779
PEGSIPIELRL	11	Unmodified	_PEGSIPIELRL_					0	0	0			REV__nc|ENSG00000196091|Q00872-7|MYBPC1	REV__nc|ENSG00000196091|Q00872-7|MYBPC1	MULTI-SECPEP	A375_MHC_IP_R1	1	409.2923278808594	3	408.571322	1222.69214	-0.49756	-0.00020329	0.36016	0.00014715	-0.13741	-5.614E-05	408.5715053812462	41.394	0.40657	41.394	41.164	41.571	0					12	7	2	0	0	0	0.98397	1	14235	14235		13.519	0	1	1452900	+		38485	27433	28196	28428	37521	37521					0.08969928257374704
PEGSIPIELRL	11	Unmodified	_PEGSIPIELRL_					0	0	0			REV__nc|ENSG00000196091|Q00872-7|MYBPC1	REV__nc|ENSG00000196091|Q00872-7|MYBPC1	MULTI-SECPEP	A375_MHC_IP_R2	2	409.2921142578125	3	408.571322	1222.69214	-0.043097	-1.7608E-05	0.094714	3.8697E-05	0.051617	2.1089E-05	408.5712577203513	40.266	0.30376	41.041	40.879	41.183	0.77451					9	5	2	0	0	0	0.98397	1	14949	14949		9.7643	2.7272	1	1054000	+		38486	27433	28196	28428	37522	37522					0.08969928257374704
PEHCLPRAVAS	11	Unmodified	_PEHCLPRAVAS_					0	0	0			REV__ENST00000489702.6_2_7:128577736-128582314:+|nuORF	REV__ENST00000489702.6_2_7:128577736-128582314:+|nuORF	MSMS	A375_MHC_IP_R2	2	590.2156372070312	2	590.30059	1178.58663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.426	1	87.159	86.659	87.659	0.733								0	0	0	0.15837	1	32867	32867		15.248	0.41021	1		+		38487	25374	28197	28429	37523	37523					0.004476888600947859
PEHDPIRDQSW	11	Unmodified	_PEHDPIRDQSW_					0	0	0		ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C	ENSG00000171988|ENST00000399262|JMJD1C	ENSG00000171988|ENST00000399262|JMJD1C	MULTI-MSMS	A375_MHC_IP_R1	1	460.6495361328125	3	460.549469	1378.62658	-0.32047	-0.00014759	0.13058	6.0138E-05	-0.18989	-8.7455E-05	460.5496060518227	36.999	0.35258	36.999	36.795	37.148	0					14	6	3	0	0	0	0.73029	1	12453	12453		8.6273	3.9114	1	3358200			38488	7668	28198	28430	37524	37524					-0.047590929356374545
PEHDPIRDQSW	11	Unmodified	_PEHDPIRDQSW_					0	0	0		ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C	ENSG00000171988|ENST00000399262|JMJD1C	ENSG00000171988|ENST00000399262|JMJD1C	MULTI-SECPEP	A375_MHC_IP_R2	2	460.9493103027344	3	460.549469	1378.62658	-0.58413	-0.00026902	0.05917	2.7251E-05	-0.52496	-0.00024177	460.5495229693474	36.237	0.45858	37.008	36.799	37.258	0.7709					14	8	2	0	0	0	0.90223	1	13243	13243		18.853	18.853	1	3659000			38489	7668	28198	28430	37525	37525					-0.047590929356374545
PEHIPLSLT	9	Unmodified	_PEHIPLSLT_					0	0	0			REV__ENSG00000164185|ENST00000296600|ZNF474	REV__ENSG00000164185|ENST00000296600|ZNF474	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1866760253906	2	503.782025	1005.5495	-0.64217	-0.00032352	0.66641	0.00033573	0.024241	1.2212E-05	503.78280541943104	126.77	0.25311	127.03	126.9	127.16	0.26593					5	4	2	0	0	0	0.55359	1	49585	49585		28.487	8.0332	1	3709800	+		38490	20464	28199	28431	37526	37526					0.04694340586001999
PEHLAWLKQ	9	Unmodified	_PEHLAWLKQ_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP;ENST00000496607.5_1_21:47655184-47686088:-|nuORF;ENST00000486937.5_1_21:47655184-47666418:-|nuORF;nc|ENSG00000160294|O60318-2|MCM3AP;ENST00000467026.5_1_21:47655184-47679082:-|nuORF	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MSMS	A375_MHC_IP_R1	1	561.3720703125	2	561.308741	1120.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.32	1	19.32	18.82	19.82	0								0	0	0	0.15486	1	4694	4694		7.9102	0	1				38491	6414	28200	28432	37527	37527					0.0474513808849224
PEHNFHTPF	9	Unmodified	_PEHNFHTPF_					0	0	0			REV__nc|ENSG00000133943|Q7Z3D6-5|DGLUCY	REV__nc|ENSG00000133943|Q7Z3D6-5|DGLUCY	MULTI-MSMS	A375_MHC_IP_R1	1	376.241943359375	3	375.841924	1124.50394	0.23963	9.0064E-05	2.0132	0.00075664	2.2528	0.00084671	375.84190097646365	41.957	0.40689	41.957	41.725	42.132	0					21	7	4	0	0	0	0.64971	1	14525	14525		7.9454	0.84368	1	3138800	+		38492	18741	28201	28433	37528	37528					-0.053328848764067516
PEHNFHTPF	9	Unmodified	_PEHNFHTPF_					0	0	0			REV__nc|ENSG00000133943|Q7Z3D6-5|DGLUCY	REV__nc|ENSG00000133943|Q7Z3D6-5|DGLUCY	MULTI-SECPEP	A375_MHC_IP_R1	1	375.6134033203125	3	375.841924	1124.50394	0.23963	9.0064E-05	2.0132	0.00075664	2.2528	0.00084671	375.84190097646365	41.957	0.40689	41.957	41.725	42.132	0					21	7	4	0	0	0	0.76452	1	14527	14527		3.0723	1.33	1	3138800	+		38493	18741	28201	28433	37529	37529					-0.053328848764067516
PEHPVATLST	10	Unmodified	_PEHPVATLST_					0	0	0		nc|ENSG00000069188|Q58EX2-3|SDK2;ENSG00000069188|ENST00000392650|SDK2;nc|ENSG00000069188|Q58EX2-4|SDK2;ENST00000479356.1_1_17:71354047-71433905:-|nuORF;nc|ENSG00000069188|Q58EX2-2|SDK2	nc|ENSG00000069188|Q58EX2-3|SDK2	nc|ENSG00000069188|Q58EX2-3|SDK2	MULTI-SECPEP	A375_MHC_IP_R1	1	525.9373779296875	2	526.274564	1050.53457	-0.61763	-0.00032504	0.20425	0.00010749	-0.41338	-0.00021755	526.2749734079324	65.726	0.45786	65.726	65.514	65.972	0					14	8	2	0	0	0	0.91909	1	23780	23780		5.7319	1.4026	1	1230000			38494	1474	28202	28434	37530	37530					0.011328487179980584
PEHVHLTVH	9	Unmodified	_PEHVHLTVH_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	A375_MHC_IP_R2	2	356.94866943359375	3	356.857686	1067.55123	-0.47799	-0.00017057	-2.4771	-0.00088398	-2.9551	-0.0010546	357.19078414395176	23.755	0.25337	24.385	24.232	24.485	0.63014					6	4	2	0	0	0	0.78351	1	7698	7698		5.2969	1.3525	1	521000	+		38495	19347	28203	28435	37531	37531					0.02015394394584291
PEHVLRHTQ	9	Unmodified	_PEHVLRHTQ_					0	0	0		ENSG00000148291|ENST00000371964|SURF2	ENSG00000148291|ENST00000371964|SURF2	ENSG00000148291|ENST00000371964|SURF2	MULTI-SECPEP	A375_MHC_IP_R2	2	558.7081298828125	2	558.799072	1115.58359	-0.99224	-0.00055447	-0.28522	-0.00015938	-1.2775	-0.00071384	558.7990083971091	38.775	0.46134	39.55	39.351	39.812	0.77451					12	8	2	0	0	0	0.80191	1	14222	14222		8.7454	6.9012	1	3476700			38496	5727	28204	28436	37532	37532					0.03042181797604826
PEHVLRHTQ	9	Unmodified	_PEHVLRHTQ_					0	0	0		ENSG00000148291|ENST00000371964|SURF2	ENSG00000148291|ENST00000371964|SURF2	ENSG00000148291|ENST00000371964|SURF2	MULTI-MATCH	A375_MHC_IP_R1	1		2	558.799072	1115.58359	-0.76689	-0.00042854	0.17979	0.00010047	-0.5871	-0.00032807	558.7992162773922	39.685	0.40622	39.685	39.541	39.948	0	0.067496	7.1764E-05	NaN	5.2969	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5295900			38497	5727	28204	28436							0.03042181797604826
PEIDEKLLY	9	Unmodified	_PEIDEKLLY_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4;ENST00000553618.1_1_14:67665960-67666731:+|nuORF	ENSG00000143368|ENST00000271628|SF3B4;ENST00000553618.1_1_14:67665960-67666731:+|nuORF	ENSG00000143368|ENST00000271628|SF3B4	MULTI-SECPEP	A375_MHC_IP_R1	1	559.7166748046875	2	560.300247	1118.58594	-0.49016	-0.00027464	0.11502	6.4447E-05	-0.37513	-0.00021019	560.2999320176857	73.462	0.55656	73.462	73.184	73.74	0					20	10	3	0	0	0	0.70759	1	26699	26699		16.149	8.5402	1	1608000			38498	5375;13406	28205	28437	37533	37533					0.031391726920674046
PEIFRQRFRRF	11	Unmodified	_PEIFRQRFRRF_					0	0	0		ENST00000482979.5_1_7:99621129-99621950:+|nuORF;ENSG00000106261|ENST00000324306|ZKSCAN1	ENST00000482979.5_1_7:99621129-99621950:+|nuORF	ENST00000482979.5_1_7:99621129-99621950:+|nuORF	MSMS	A375_MHC_IP_R2	2	776.439697265625	2	776.436401	1550.85825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.09	1	122.5	122	123	0.40487								0	0	0	0.16316	1	46754	46754		2.2828	1.0894	1				38499	2676	28206	28438	37534	37534					0.10485419276574248
PEIISELQQY	10	Unmodified	_PEIISELQQY_					0	0	0		ENSG00000164080|ENST00000684192|RAD54L2;ENST00000487093.5_1_3:51669772-51697433:+|nuORF;ENST00000461680.1_1_3:51673299-51697433:+|nuORF	ENSG00000164080|ENST00000684192|RAD54L2	ENSG00000164080|ENST00000684192|RAD54L2	MULTI-MSMS	A375_MHC_IP_R1	1	407.1348571777344	3	407.211683	1218.61322	-0.21661	-8.8205E-05	-1.5366	-0.00062573	-1.7532	-0.00071393	407.2111050031084	39.398	0.25285	39.398	39.238	39.491	0					9	4	3	0	0	0	0.70741	1	13451	13451		8.9762	0	1	3297900			38500	6773	28207	28439	37535	37535					0.012656562324536935
PEIISELQQY	10	Unmodified	_PEIISELQQY_					0	0	0		ENSG00000164080|ENST00000684192|RAD54L2;ENST00000487093.5_1_3:51669772-51697433:+|nuORF;ENST00000461680.1_1_3:51673299-51697433:+|nuORF	ENSG00000164080|ENST00000684192|RAD54L2	ENSG00000164080|ENST00000684192|RAD54L2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	407.211683	1218.61322	-0.21661	-8.8205E-05	-1.5366	-0.00062573	-1.7532	-0.00071393	407.2111050031084	39.398	0.25285	39.398	39.238	39.491	0	0.031467	0.00026086	NaN	8.9762	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3297900			38501	6773	28207	28439							0.012656562324536935
PEILKKGLRPE	11	Unmodified	_PEILKKGLRPE_					0	0	0			REV__nc|ENSG00000065000|O14617|AP3D1	REV__nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	A375_MHC_IP_R1	1	427.6626281738281	3	427.2626	1278.76597	-0.12831	-5.4822E-05	0.042616	1.8208E-05	-0.085693	-3.6613E-05	427.26262510900546	54.842	0.66093	54.842	54.567	55.228	0					37	12	4	0	0	0	0.72713	1	19572	19572		11.631	0.56609	1	14066000	+		38502	16486	28208	28440	37536	37536					0.13773896419706944
PEIPGAIPVQG	11	Unmodified	_PEIPGAIPVQG_					0	0	0		ENSG00000138336|ENST00000373644|TET1;nc|ENSG00000138336|Q8NFU7-3|TET1;nc|ENSG00000138336|Q8NFU7-4|TET1	ENSG00000138336|ENST00000373644|TET1	ENSG00000138336|ENST00000373644|TET1	MSMS	A375_MHC_IP_R2	2	359.92919921875	3	359.86948	1076.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.725	1	33.462	32.962	33.962	0.73692								0	0	0	0.15541	1	11674	11674		9.7643	0	1				38503	4979	28209	28441	37537	37537					0.05138012131783398
PEIRKKPAY	9	Unmodified	_PEIRKKPAY_					0	0	0			REV__ENSG00000102738|ENST00000323563|MRPS31	REV__ENSG00000102738|ENST00000323563|MRPS31	MULTI-MSMS	A375_MHC_IP_R1	1	368.24896240234375	3	367.885353	1100.63423	0.022224	8.1757E-06	-1.517	-0.00055807	-1.4947	-0.00054989	367.885376265779	24.017	0.45657	24.017	23.635	24.092	0					11	8	2	0	0	0	0.59266	1	6616	6616		15.248	3.7538	1	3709000	+		38504	17228	28210	28442	37538	37538					0.08793711122621062
PEKAEEQVAMS	11	Unmodified	_PEKAEEQVAMS_					0	0	0			REV__ENSG00000099991|ENST00000263119|CABIN1	REV__ENSG00000099991|ENST00000263119|CABIN1	MULTI-SECPEP	A375_MHC_IP_R1	1	407.6109924316406	3	406.860544	1217.5598	-0.48739	-0.0001983	-2.3162	-0.00094237	-2.8036	-0.0011407	406.8593890320481	27.953	0.40343	27.953	27.735	28.138	0					11	6	2	0	0	0	0.99227	1	8624	8624		1.2148	0	1	3305000	+		38505	17038	28211	28443	37539	37539					-0.0402746454174121
PEKDTTFEFY	10	Unmodified	_PEKDTTFEFY_					0	0	0			REV__ENSG00000100055|ENST00000248901|CYTH4	REV__ENSG00000100055|ENST00000248901|CYTH4	MSMS	A375_MHC_IP_R1	1	639.2235717773438	2	638.790244	1275.56593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.31	1	119.31	118.81	119.81	0								0	0	0	0.15451	1	44068	44068		6.2058	0	1		+		38506	17045	28212	28444	37540	37540					-0.060826230385600866
PEKDVSVSH	9	Unmodified	_PEKDVSVSH_					0	0	0			REV__ENST00000493315.1_1_2:63631156-63711794:-|nuORF	REV__ENST00000493315.1_1_2:63631156-63711794:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	997.9786987304688	1	997.494901	996.487624	0.20212	0.00020161	2.0914	0.0020862	2.2935	0.0022878	997.4976568899538	114.88	0.25365	115.57	115.37	115.63	0.68999					5	4	2	0	0	0	0.76187	1	43297	43297		7.2892	0	1	2311900	+		38507	19398	28213	28445	37541	37541					-0.010760108331396623
PEKEEEEEGNS	11	Unmodified	_PEKEEEEEGNS_					0	0	0			REV__nc|ENSG00000152583|Q14515-2|SPARCL1	REV__nc|ENSG00000152583|Q14515-2|SPARCL1	MSMS	A375_MHC_IP_R1	1	638.5888671875	2	638.762411	1275.51027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.85	1	119.85	119.35	120.35	0								0	0	0	0.16258	1	44349	44349		5.2969	0	1		+		38508	19810	28214	28446	37542	37542					-0.11646501016844013
PEKEEEEEGNS	11	Unmodified	_PEKEEEEEGNS_					0	0	0			REV__nc|ENSG00000152583|Q14515-2|SPARCL1	REV__nc|ENSG00000152583|Q14515-2|SPARCL1	MSMS	A375_MHC_IP_R1	1	638.6268310546875	2	638.762411	1275.51027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.9	1	119.9	119.4	120.4	0								0	0	0	0.16258	1	44372	44372		5.2969	0.39987	1		+		38509	19810	28214	28446	37543	37543					-0.11646501016844013
PEKERRRLK	9	Unmodified	_PEKERRRLK_					0	0	0		ENSG00000187796|ENST00000371732|CARD9;ENST00000489932.2_1_9:139258756-139262364:-|nuORF	ENSG00000187796|ENST00000371732|CARD9	ENSG00000187796|ENST00000371732|CARD9	MULTI-SECPEP	A375_MHC_IP_R1	1	606.77001953125	2	606.370195	1210.72584	-0.12623	-7.654E-05	-1.4686	-0.00089053	-1.5948	-0.00096707	606.3692337178932	127.95	0.75996	127.95	127.67	128.43	0					28	14	3	0	0	0	0.80891	1	49180	49180		1.3295	0	1	21103000			38510	8859	28215	28447	37544	37544					0.12890394539772387
PEKIEECNQF	10	Unmodified	_PEKIEECNQF_					0	0	0		ENSG00000006757|ENST00000381042|PNPLA4	ENSG00000006757|ENST00000381042|PNPLA4	ENSG00000006757|ENST00000381042|PNPLA4	MULTI-SECPEP	A375_MHC_IP_R1	1	412.60943603515625	3	412.857023	1235.54924	0.21087	8.7061E-05	-1.3828	-0.00057088	-1.1719	-0.00048382	412.8565320314053	73.615	0.55807	73.615	73.437	73.995	0					14	10	2	0	0	0	0.94707	1	26907	26907		0.56317	0	1	732420			38511	931	28216	28448	37545	37545					-0.059114471961947856
PEKKIRFFKY	10	Unmodified	_PEKKIRFFKY_					0	0	0			REV__tr|U7T3S2|U7T3S2_FUSNUdTDP-4-dehydrorhamnose3,5-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00516PE=4SV=1	REV__tr|U7T3S2|U7T3S2_FUSNUdTDP-4-dehydrorhamnose3,5-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00516PE=4SV=1	MSMS	A375_MHC_IP_R2	2	678.2971801757812	2	678.395348	1354.77614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.88	1	143.9	143.4	144.4	0.024414								0	0	0	0.15585	1	56217	56217		1.8442	0.51471	1		+		38512	28787	28217	28449	37546	37546					0.1129450414493931
PEKKKHKKVK	10	Unmodified	_PEKKKHKKVK_					0	0	0			REV__nc|ENSG00000092853|Q9HAW4-2|CLSPN	REV__nc|ENSG00000092853|Q9HAW4-2|CLSPN	MSMS	A375_MHC_IP_R2	2	417.30291748046875	3	417.274952	1248.80303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.917	1	23.547	23.047	24.047	0.63014								0	0	0	0.15588	1	7310	7310		1.7423	0	1		+		38513	16977	28218	28450	37547	37547					0.18857612756119124
PEKKKKKKRK	10	Unmodified	_PEKKKKKKRK_					0	0	0		AluSc_dup13832|chr7:33006087-33006413:-|3.5749967869954853|0.4159080058002372|3.1|471.0|3|1|sense	AluSc_dup13832|chr7:33006087-33006413:-|3.5749967869954853|0.4159080058002372|3.1|471.0|3|1|sense	AluSc_dup13832|chr7:33006087-33006413:-|3.5749967869954853|0.4159080058002372|3.1|471.0|3|1|sense	MULTI-SECPEP	A375_MHC_IP_R1	1	650.1412963867188	2	649.443163	1296.87177	-0.67154	-0.00043613	1.8688	0.0012137	1.1972	0.00077753	649.4443367099465	124.48	0.25399	124.48	124.39	124.65	0					6	4	2	0	0	0	0.9269	1	46974	46974		3.5965	0.60125	1	16404000			38514	112	28219	28451	37548	37548					0.23521277055806422
PEKKKRKKK	9	Unmodified	_PEKKKRKKK_					0	0	0			REV__ENSG00000124177|ENST00000373233|CHD6	REV__ENSG00000124177|ENST00000373233|CHD6	MULTI-MSMS	A375_MHC_IP_R1	1	1169.7821044921875	1	1169.78409	1168.77681	-0.41886	-0.00048998	-2.5799	-0.0030179	-2.9987	-0.0035079	1170.7841028379135	121.93	0.76156	121.93	121.41	122.18	0					20	14	3	0	0	0	0.73415	1	45098	45098		3.9444	0	1	44808000	+		38515	18278	28220	28452	37549	37549					0.19917343584643277
PEKREKTSEPK	11	Unmodified	_PEKREKTSEPK_					0	0	0		ENSG00000158286|ENST00000377939|RNF207	ENSG00000158286|ENST00000377939|RNF207	ENSG00000158286|ENST00000377939|RNF207	MULTI-MSMS	A375_MHC_IP_R1	1	664.9269409179688	2	664.862066	1327.70958	-0.9547	-0.00063474	-1.4359	-0.00095468	-2.3906	-0.0015894	665.3617310208193	121.69	0.40544	121.69	121.52	121.92	0					12	7	2	0	0	0	0.72869	1	45169	45169		10.151	1.4052	1	35171000			38516	6298	28221	28453	37550	37550					0.05883223792375247
PEKRLDEPDE	10	Unmodified	_PEKRLDEPDE_					0	0	0			REV__COL5A1|p.G287R|1|0.38|ENSG00000130635|chr9:134728742-134728742|G/A|missense_variant	REV__COL5A1|p.G287R|1|0.38|ENSG00000130635|chr9:134728742-134728742|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	614.349365234375	2	614.296224	1226.5779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.38	1	118.38	117.88	118.88	0								0	0	0	0.15372	1	43564	43564		8.7454	0.83525	1		+		38517	15831	28222	28454	37551	37551					-0.02633006295377527
PEKRRGVLL	9	Unmodified	_PEKRRGVLL_					0	0	0			REV__ENST00000265986.10_1_10:94267887-94268517:-|nuORF	REV__ENST00000265986.10_1_10:94267887-94268517:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	355.9447937011719	3	356.560981	1066.66111	-0.10116	-3.6071E-05	-0.6091	-0.00021718	-0.71027	-0.00025325	356.5608059529821	44.19	0.50663	44.959	44.682	45.188	0.7691					13	9	2	0	0	0	0.78351	1	16463	16463		8.7454	4.5559	1	1191400	+		38518	23257	28223	28455	37552	37552					0.1304481973379552
PEKTKTSS	8	Unmodified	_PEKTKTSS_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2;REV__FSIP2|p.T6548Lfs*12|1|0.3|ENSG00000188738|chr2:185808944-185808944|A/-|frameshift_variant	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	A375_MHC_IP_R2	2	439.6345520019531	2	439.234907	876.455261	-0.2827	-0.00012417	-0.72676	-0.00031922	-1.0095	-0.00044339	439.2345097612843	103.63	0.91391	104.39	103.89	104.8	0.76428					29	17	2	0	0	0	0.77583	1	39241	39241		10.074	0	1	1527800	+		38519	22110;26655	28224	28456	37553	37553					0.012092017638565267
PEKVFVDMT	9	Unmodified	_PEKVFVDMT_					0	0	0			REV__ENSG00000253729|ENST00000314191|PRKDC	REV__ENSG00000253729|ENST00000314191|PRKDC	MULTI-SECPEP	A375_MHC_IP_R2	2	355.6012878417969	3	355.847687	1064.52123	-0.15285	-5.4391E-05	0.10684	3.8017E-05	-0.046012	-1.6373E-05	355.8479342580786	27.343	0.40813	28.021	27.741	28.149	0.67857					9	7	2	0	0	0	0.73363	1	9269	9269		10.8	7.2124	1	799770	+		38520	22858	28225	28457	37554	37554					-0.008447253855820236
PEKVIEKTWEA	11	Unmodified	_PEKVIEKTWEA_					0	0	0		tr|U7SEE9|U7SEE9_FUSNU2',3'-cyclic-nucleotide3'-phosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02343PE=4SV=1	tr|U7SEE9|U7SEE9_FUSNU2',3'-cyclic-nucleotide3'-phosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02343PE=4SV=1	tr|U7SEE9|U7SEE9_FUSNU2',3'-cyclic-nucleotide3'-phosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02343PE=4SV=1	MSMS	A375_MHC_IP_R2	2	665.2201538085938	2	665.356085	1328.69762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.73	1	122.17	121.67	122.67	0.44488								0	0	0	0.16138	1	46597	46597		11.495	0	1				38521	29383	28226	28458	37555	37555					0.04641607049211416
PEKVIIEEI	9	Unmodified	_PEKVIIEEI_					0	0	0			REV__tr|U7SM47|U7SM47_FUSNUUDP-3-O-acyl-N-acetylglucosaminedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxCPE=3SV=1	REV__tr|U7SM47|U7SM47_FUSNUUDP-3-O-acyl-N-acetylglucosaminedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxCPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	357.6090087890625	3	357.209502	1068.60668	-0.29602	-0.00010574	1.3915	0.00049705	1.0955	0.00039131	357.2098716416075	67.461	0.86371	67.461	67.091	67.955	0					27	16	3	0	0	0	0.71902	1	24537	24537		5.2969	0	1	3084200	+		38522	28289	28227	28459	37556	37556					0.07511763071738642
PEKVKELQRFI	11	Unmodified	_PEKVKELQRFI_					0	0	0		ENSG00000089163|ENST00000202967|SIRT4	ENSG00000089163|ENST00000202967|SIRT4	ENSG00000089163|ENST00000202967|SIRT4	MSMS	A375_MHC_IP_R2	2	693.9064331054688	2	693.908819	1385.80309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.87	1	120.4	119.9	120.9	0.5321								0	0	0	0.16138	1	45685	45685		11.495	3.8858	1				38523	1918	28228	28460	37557	37557					0.12561567965462928
PEKVPENDGYM	11	Unmodified	_PEKVPENDGYM_					0	0	0		nc|ENSG00000138606|Q7M4L6-2|SHF;nc|ENSG00000138606|Q7M4L6|SHF;ENSG00000138606|ENST00000690270|SHF	nc|ENSG00000138606|Q7M4L6-2|SHF	nc|ENSG00000138606|Q7M4L6-2|SHF	MSMS	A375_MHC_IP_R1	1	639.7853393554688	2	639.787178	1277.5598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.32	1	117.32	116.82	117.82	0								0	0	0	0.16213	1	43078	43078		7.609	2.7119	1				38524	5006	28229	28461	37558	37558					-0.06787464541753252
PELDDMTL	8	Unmodified	_PELDDMTL_					0	0	0		nc|ENSG00000096717|Q96EB6-2|SIRT1;ENSG00000096717|ENST00000212015|SIRT1	nc|ENSG00000096717|Q96EB6-2|SIRT1	nc|ENSG00000096717|Q96EB6-2|SIRT1	MULTI-SECPEP	A375_MHC_IP_R1	1	467.14532470703125	2	467.215326	932.416099	-0.09674	-4.5198E-05	-1.9218	-0.00089787	-2.0185	-0.00094307	467.212479352711	53.835	0.40569	53.835	53.758	54.163	0					9	7	2	0	0	0	0.94479	1	19196	19196		8.5933	2.8329	1	622120			38525	2061	28230	28462	37559	37559					-0.05281266582005628
PELEEQRRH	9	Unmodified	_PELEEQRRH_					0	0	0			REV__ENST00000290902.9_1_4:1166395-1166464:-|nuORF	REV__ENST00000290902.9_1_4:1166395-1166464:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	597.6101684570312	2	597.304718	1192.59488	-0.54155	-0.00032347	4.0055	0.0023925	3.4639	0.002069	597.8109148343101	83.069	0.96268	83.808	83.393	84.356	0.73962					26	18	2	0	0	0	0.71541	1	31501	31501		7.2892	1.0834	1	3364800	+		38526	23361	28231	28463	37560	37560					0.006289591010954609
PELEKRDI	8	Unmodified	_PELEKRDI_					0	0	0			REV__ENSG00000120162|ENST00000262244|MOB3B	REV__ENSG00000120162|ENST00000262244|MOB3B	MULTI-SECPEP	A375_MHC_IP_R2	2	500.97650146484375	2	500.277106	998.53966	-0.56036	-0.00028033	-0.88716	-0.00044382	-1.4475	-0.00072416	500.7768662386428	76.055	0.25215	76.796	76.691	76.943	0.74052					6	4	2	0	0	0	0.93661	1	28867	28867		10.824	1.4408	1	707670	+		38527	18115	28232	28464	37561	37561					0.04033152580609567
PELIRKRARSN	11	Unmodified	_PELIRKRARSN_					0	0	0			REV__ENSG00000133884|ENST00000528416|DPF2	REV__ENSG00000133884|ENST00000528416|DPF2	MULTI-MSMS	A375_MHC_IP_R1	1	447.66925048828125	3	447.268748	1338.78442	-0.44015	-0.00019687	0.98504	0.00044058	0.54488	0.00024371	447.26937837015134	142.72	0.1523	142.72	142.64	142.79	0					4	2	2	0	0	0	0.73891	1	54782	54782		0.40827	0	1	2225300	+		38528	18739	28233	28465	37562	37562					0.1285745111426877
PELLLSRPLTL	11	Unmodified	_PELLLSRPLTL_					0	0	0			REV__nc|ENSG00000099910|Q53GT1-3|KLHL22	REV__nc|ENSG00000099910|Q53GT1-3|KLHL22	MULTI-MSMS	A375_MHC_IP_R2	2	418.154052734375	3	417.927218	1250.75982	-0.56241	-0.00023505	0.25193	0.00010529	-0.31048	-0.00012976	417.92716370674594	52.831	0.25255	53.582	53.436	53.688	0.75105					6	4	2	0	0	0	0.73439	1	19870	19870		4.7159	1.1289	1	675670	+		38529	17034	28234	28466	37563	37563					0.14447378188197035
PELMNPMSV	9	Unmodified	_PELMNPMSV_					0	0	0			REV__nc|ENSG00000099204|O14639-4|ABLIM1	REV__nc|ENSG00000099204|O14639-4|ABLIM1	MSMS	A375_MHC_IP_R1	1	509.1369323730469	2	509.240821	1016.46709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.89	1	76.89	76.39	77.39	0								0	0	0	0.1499	1	28036	28036		21.747	2.3076	1		+		38530	17012	28235	28467	37564	37564					-0.04048640808798609
PELPLSLTSRS	11	Unmodified	_PELPLSLTSRS_					0	0	0			REV__KCNB2|p.P22L|1|0.14|ENSG00000182674|chr8:72567799-72567799|C/T|missense_variant	REV__KCNB2|p.P22L|1|0.14|ENSG00000182674|chr8:72567799-72567799|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	600.7335205078125	2	600.335153	1198.65575	-0.48607	-0.00029181	-0.99438	-0.00059696	-1.4805	-0.00088877	600.3337955115087	129.1	2.2867	129.1	128.13	130.41	0					120	44	5	0	0	0	0.73078	1	49988	49988		8.1555	1.4324	1	96536000	+		38531	26820	28236	28468	37565	37565					0.0643705136067183
PELVRSPLV	9	Unmodified	_PELVRSPLV_					0	0	0		ENSG00000095321|ENST00000318080|CRAT;nc|ENSG00000095321|P43155-2|CRAT;nc|ENSG00000095321|P43155-3|CRAT	ENSG00000095321|ENST00000318080|CRAT	ENSG00000095321|ENST00000318080|CRAT	MULTI-SECPEP	A375_MHC_IP_R2	2	504.65411376953125	2	505.305667	1008.59678	-0.62245	-0.00031453	0.58562	0.00029592	-0.036829	-1.861E-05	505.3057130293571	92.974	0.96501	93.713	93.341	94.306	0.73902					45	18	4	0	0	0	0.53748	1	35287	35287		8.7454	3.0136	1	4908900			38532	2040	28237	28469	37566	37566					0.09282619857003738
PEMDENTNY	9	Unmodified	_PEMDENTNY_					0	0	0			REV__ENSG00000239305|ENST00000237455|RNF103	REV__ENSG00000239305|ENST00000237455|RNF103	MULTI-MSMS	A375_MHC_IP_R1	1	557.1845092773438	2	556.713679	1111.4128	-0.63573	-0.00035392	0.15098	8.4051E-05	-0.48475	-0.00026987	556.7137884314728	47.061	1.1222	47.061	46.596	47.718	0					56	21	3	0	0	0	0.38603	3	16515	16515;16670;16717		25.399	1.3285	1	13475000	+		38533	22768	28238	28470	37567;37568;37569	37567					-0.13844561426685686
PEMDENTNY	9	Unmodified	_PEMDENTNY_					0	0	0			REV__ENSG00000239305|ENST00000237455|RNF103	REV__ENSG00000239305|ENST00000237455|RNF103	MULTI-MSMS	A375_MHC_IP_R1	1	557.1133422851562	2	556.713679	1111.4128	-0.51898	-0.00028892	0.044252	2.4636E-05	-0.47473	-0.00026429	556.7136992197968	52.275	3.3483	52.275	51.168	54.516	0					126	65	3	0	0	0	0.4867	1	18878	18878		20.454	9.6297	1	3620800	+		38534	22768	28238	28470	37570	37570					-0.13844561426685686
PEMVCQRQY	9	Unmodified	_PEMVCQRQY_					0	0	0		nc|ENSG00000140474|Q6PHR2-3|ULK3;ENSG00000140474|ENST00000440863|ULK3;nc|ENSG00000140474|Q6PHR2-4|ULK3;nc|ENSG00000140474|Q6PHR2-2|ULK3;ENST00000570276.5_1_15:75132809-75135659:-|nuORF	nc|ENSG00000140474|Q6PHR2-3|ULK3	nc|ENSG00000140474|Q6PHR2-3|ULK3	MSMS	A375_MHC_IP_R2	2	577.5264282226562	2	577.260076	1152.5056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.55	1	116.24	115.74	116.74	0.68999								0	0	0	0.15486	1	43559	43559		4.3292	0.38484	1				38535	14641	28239	28471	37571	37571					-0.06455335174291577
PEMYDCVCY	9	Unmodified	_PEMYDCVCY_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-SECPEP	A375_MHC_IP_R1	1	561.1702270507812	2	561.700671	1121.38679	-0.46467	-0.000261	-4.3647	-0.0024517	-4.8294	-0.0027127	562.1995434779857	73.948	0.20296	73.948	73.792	73.995	0					5	3	2	0	0	0	0.80005	1	26901	26901		2.0598	0	1	349820	+		38536	17258	28240	28472	37572	37572					-0.16904870194184696
PEPDPSGD	8	Unmodified	_PEPDPSGD_					0	0	0			REV__ENST00000597923.1_1_19:49099920-49102660:+|nuORF	REV__ENST00000597923.1_1_19:49099920-49102660:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	814.19677734375	1	813.326104	812.318828	-0.42523	-0.00034585	-0.11375	-9.2515E-05	-0.53897	-0.00043836	813.3245078960169	119.06	0.25212	119.06	118.98	119.23	0					5	4	2	0	0	0	0.77717	1	43978	43978		5.2307	0	1	6871700	+		38537	16877	28241	28473	37573	37573					-0.09483912466657785
PEPDQNLVAM	10	Unmodified	_PEPDQNLVAM_					0	0	0		ENSG00000138380|ENST00000438828|CARF;nc|ENSG00000138380|Q8N187-3|CARF	ENSG00000138380|ENST00000438828|CARF	ENSG00000138380|ENST00000438828|CARF	MULTI-SECPEP	A375_MHC_IP_R1	1	557.097412109375	2	557.265881	1112.51721	-0.56731	-0.00031614	-2.6881	-0.001498	-3.2554	-0.0018141	557.2647415863863	53.377	0.35614	53.377	53.199	53.555	0					9	6	2	0	0	0	0.8125	1	18981	18981		8.7454	0	1	1706500			38538	4986	28242	28474	37574	37574					-0.034548148793419386
PEPGEGPRKL	10	Unmodified	_PEPGEGPRKL_					0	0	0		nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1;nc|ENSG00000187164|A0MZ66-7|SHTN1	nc|ENSG00000187164|A0MZ66-8|SHTN1	nc|ENSG00000187164|A0MZ66-8|SHTN1	MULTI-SECPEP	A375_MHC_IP_R2	2	359.9288330078125	3	360.532979	1078.57711	-0.5541	-0.00019977	1.0335	0.00037262	0.47942	0.00017285	360.5320398046889	24.645	0.15306	25.289	25.161	25.314	0.64368					4	2	2	0	0	0	0.83355	1	8117	8117		10.899	0.58372	1	1168500			38539	8809	28243	28475	37575	37575					0.04096243846242942
PEPLSWPVRLH	11	Unmodified	_PEPLSWPVRLH_					0	0	0		ENST00000498522.5_1_9:35605559-35607650:+|nuORF;ENSG00000107140|ENST00000336395|TESK1	ENST00000498522.5_1_9:35605559-35607650:+|nuORF	ENST00000498522.5_1_9:35605559-35607650:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	665.262451171875	2	665.866954	1329.71936	-0.82408	-0.00054873	0.90086	0.00059985	0.076778	5.1124E-05	665.8677645503686	133.58	0.5085	133.58	133.3	133.81	0					15	9	3	0	0	0	0.99676	1	51449	51449		1.1933	0	1	4666900			38540	2726	28244	28476	37576	37576					0.0676845658840648
PEPQPQTRPI	10	Unmodified	_PEPQPQTRPI_					0	0	0			REV__nc|ENSG00000108375|Q68DV7-3|RNF43	REV__nc|ENSG00000108375|Q68DV7-3|RNF43	MULTI-SECPEP	A375_MHC_IP_R1	1	388.92791748046875	3	388.212017	1161.61422	0.090243	3.5033E-05	0.53074	0.00020604	0.62099	0.00024107	388.2122364223904	28.207	0.40324	28.207	28.037	28.44	0					11	7	3	0	0	0	0.88918	1	8639	8639		7.9454	2.8979	1	1631500	+		38541	17526	28245	28477	37577	37577					0.0398791539200829
PEPTDEEWE	9	Unmodified	_PEPTDEEWE_					0	0	0		ENSG00000151090|ENST00000646209|THRB;nc|ENSG00000151090|P10828-2|THRB	ENSG00000151090|ENST00000646209|THRB	ENSG00000151090|ENST00000646209|THRB	MSMS	A375_MHC_IP_R2	2	566.2479858398438	2	566.227476	1130.4404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.35	1	145.37	144.87	145.87	0.021408								0	0	0	0.15486	1	56749	56749		0.52476	0.066424	1				38542	5877	28246	28478	37578	37578					-0.11960334894797597
PEQIQAIPY	9	Unmodified	_PEQIQAIPY_					0	0	0			REV__ENSG00000204590|ENST00000376621|GNL1	REV__ENSG00000204590|ENST00000376621|GNL1	MULTI-MSMS	A375_MHC_IP_R2	2	531.70263671875	2	529.779482	1057.54441	-0.52099	-0.00027601	0.001767	9.361E-07	-0.51923	-0.00027508	529.7793945767507	78.718	1.7265	79.463	79.033	80.759	0.74473					91	33	5	0	0	0	0.2415	1	29779	29779		34.932	6.4452	1	130430000	+		38543	22527	28247	28479	37579	37579					0.017940367233904908
PEQRHEQHYRR	11	Unmodified	_PEQRHEQHYRR_					0	0	0		ENST00000475204.5_1_1:70687068-70687435:+|nuORF;ENST00000370951.5_1_1:70671397-70687435:+|nuORF;ENST00000463877.1_1_1:70671397-70687435:+|nuORF;ENST00000395136.6_2_1:70687096-70687432:+|nuORF	ENST00000475204.5_1_1:70687068-70687435:+|nuORF	ENST00000475204.5_1_1:70687068-70687435:+|nuORF	MSMS	A375_MHC_IP_R1	1	768.3856811523438	2	768.382354	1534.75016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.01	1	123.01	122.51	123.51	0								0	0	0	0.16269	1	45903	45903		2.9952	0.90923	1				38544	11161	28248	28480	37580	37580					0.004170029553506538
PEQWYWFQDRW	11	Unmodified	_PEQWYWFQDRW_					0	0	0		tr|U7STA7|U7STA7_FUSNULipidAbiosynthesislauroylacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00988PE=4SV=1	tr|U7STA7|U7STA7_FUSNULipidAbiosynthesislauroylacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00988PE=4SV=1	tr|U7STA7|U7STA7_FUSNULipidAbiosynthesislauroylacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00988PE=4SV=1	MSMS	A375_MHC_IP_R2	2	820.8656616210938	2	820.867682	1639.72081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.68	1	134.82	134.32	135.32	0.13901								0	0	0	0.16354	1	52976	52976		0.30703	0	1				38545	29673	28249	28481	37581	37581					-0.0734595411349801
PERELRDFYKE	11	Unmodified	_PERELRDFYKE_					0	0	0			REV__tr|U7SGE6|U7SGE6_FUSNULysine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lysSPE=3SV=1	REV__tr|U7SGE6|U7SGE6_FUSNULysine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lysSPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	740.7971801757812	2	741.372798	1480.73104	-0.93041	-0.00068978	0.1023	7.5843E-05	-0.82811	-0.00061394	741.3719464193522	124.37	0.30232	124.37	124.14	124.44	0					6	5	2	0	0	0	0.99676	1	46704	46704		0.26902	0	1	9279700	+		38546	28182	28250	28482	37582	37582					0.009906088210755115
PERIDPPD	8	Unmodified	_PERIDPPD_					0	0	0		ENST00000468058.1_1_19:7975099-7977313:+|nuORF;ENSG00000076984|ENST00000397979|MAP2K7;nc|ENSG00000076984|O14733-4|MAP2K7;nc|ENSG00000076984|O14733-3|MAP2K7;nc|ENSG00000076984|O14733-2|MAP2K7	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	MSMS	A375_MHC_IP_R2	2	469.66424560546875	2	469.732532	937.45051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.87	1	111.6	111.1	112.1	0.73692								0	0	0	0.16876	1	41814	41814		6.7232	0.96273	1				38547	1642	28251	28483	37583	37583					-0.020716823789143746
PERKFISN	8	Unmodified	_PERKFISN_					0	0	0		nc|ENSG00000183439|Q5EBN2|TRIM61;ENSG00000183439|ENST00000710271|TRIM61	nc|ENSG00000183439|Q5EBN2|TRIM61	nc|ENSG00000183439|Q5EBN2|TRIM61	MULTI-SECPEP	A375_MHC_IP_R1	1	495.6750183105469	2	495.771991	989.529429	-0.26749	-0.00013261	1.2009	0.00059537	0.9334	0.00046275	495.7729297671076	62.587	1.1264	62.587	62.148	63.274	0					43	21	4	0	0	0	0.90775	1	22466	22466		20.454	20.454	1	11966000			38548	8495	28252	28484	37584	37584					0.034245896460333825
PERQVKEADDL	11	Unmodified	_PERQVKEADDL_					0	0	0			REV__nc|ENSG00000175166|Q13200-2|PSMD2	REV__nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-SECPEP	A375_MHC_IP_R2	2	434.15264892578125	3	433.889491	1298.64664	-0.28305	-0.00012281	1.2259	0.00053191	0.94286	0.0004091	434.22493600421217	75.244	1.068	75.981	75.721	76.789	0.73751					23	20	2	0	0	0	0.99625	1	28756	28756		4.7159	0	1	749040	+		38549	21327	28253	28485	37585	37585					0.009266580043458816
PERVEPDRLL	10	Unmodified	_PERVEPDRLL_					0	0	0		ENST00000461377.5_1_7:45039147-45115653:+|nuORF;ENST00000476594.1_1_7:45077926-45102799:+|nuORF;ENST00000480658.5_1_7:45067303-45109452:+|nuORF;ENST00000472223.5_1_7:45067303-45110133:+|nuORF;nc|ENSG00000136280|Q9BSQ5-3|CCM2;ENSG00000136280|ENST00000258781|CCM2;nc|ENSG00000136280|Q9BSQ5-2|CCM2;ENST00000478582.5_1_7:45077926-45109516:+|nuORF;ENST00000492883.5_1_7:45067303-45109516:+|nuORF	ENST00000461377.5_1_7:45039147-45115653:+|nuORF;ENST00000478582.5_1_7:45077926-45109516:+|nuORF	ENST00000461377.5_1_7:45039147-45115653:+|nuORF	MSMS	A375_MHC_IP_R1	1	612.7604370117188	2	612.340769	1222.66699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.49	1	123.49	122.99	123.99	0								0	0	0	0.15287	1	46150	46150		13.042	0	1				38550	12183;12466	28254	28486	37586	37586					0.06455873454819994
PESDKTTAIHT	11	Unmodified	_PESDKTTAIHT_					0	0	0			REV__tr|U7T1Q1|U7T1Q1_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00530PE=4SV=1	REV__tr|U7T1Q1|U7T1Q1_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00530PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	600.67822265625	2	600.298767	1198.58298	-0.55346	-0.00033224	-0.86525	-0.00051941	-1.4187	-0.00085165	600.2980073688905	96.393	0.55791	97.144	96.856	97.414	0.75137					14	10	2	0	0	0	0.9754	1	36679	36679		12.241	0	1	1220300	+		38551	28702	28255	28487	37587	37587					-0.008367024327753825
PESDQIKQF	9	Unmodified	_PESDQIKQF_					0	0	0		ENSG00000100575|ENST00000395159|TIMM9	ENSG00000100575|ENST00000395159|TIMM9	ENSG00000100575|ENST00000395159|TIMM9	MULTI-MSMS	A375_MHC_IP_R2	2	546.234130859375	2	546.272021	1090.52949	-1.1414	-0.0006235	-0.092319	-5.0431E-05	-1.2337	-0.00067393	546.2720795535038	52.068	0.96554	52.82	52.169	53.134	0.75225					34	18	3	0	0	0	0.35581	1	19715	19715		26.884	5.137	1	5431300			38552	2194	28256	28488	37588	37588					-0.012154551446201367
PESLHSLLY	9	Unmodified	_PESLHSLLY_					0	0	0			REV__LILRB2|p.P410L|1|0.24|ENSG00000131042|chr19:54278289-54278289|G/A|missense_variant	REV__LILRB2|p.P410L|1|0.24|ENSG00000131042|chr19:54278289-54278289|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	530.1787719726562	2	529.779482	1057.54441	-0.52099	-0.00027601	0.001767	9.361E-07	-0.51923	-0.00027508	529.7793945767507	78.718	1.7265	79.463	79.033	80.759	0.74473					91	33	5	0	0	0	0.27715	1	30098	30098		32.305	1.6689	1	130430000	+		38553	26928	28257	28489	37589	37589					0.017940367234132282
PESLPPLRNPD	11	Unmodified	_PESLPPLRNPD_					0	0	0		ENSG00000128833|ENST00000261839|MYO5C;nc|ENSG00000128833|Q9NQX4-2|MYO5C;ENST00000541028.5_1_15:52553308-52587917:-|nuORF	ENSG00000128833|ENST00000261839|MYO5C;ENST00000541028.5_1_15:52553308-52587917:-|nuORF	ENSG00000128833|ENST00000261839|MYO5C	MULTI-MSMS	A375_MHC_IP_R2	2	412.6189270019531	3	412.21906	1233.63535	-0.28597	-0.00011788	0.1202	4.9548E-05	-0.16578	-6.8336E-05	412.21897991270504	19.707	1.0145	20.317	19.841	20.855	0.6103					46	19	3	0	0	0	0.67989	1	6023	6023		9.7643	0	1	2076200			38554	4166;13280	28258	28490	37590	37590					0.027878807008619333
PESSAHVQELY	11	Unmodified	_PESSAHVQELY_					0	0	0		ENSG00000141562|ENST00000309794|NARF;nc|ENSG00000141562|Q9UHQ1-2|NARF;nc|ENSG00000141562|Q9UHQ1-4|NARF;ENST00000577812.5_1_17:80442656-80446030:+|nuORF;nc|ENSG00000141562|Q9UHQ1-3|NARF	ENSG00000141562|ENST00000309794|NARF	ENSG00000141562|ENST00000309794|NARF	MULTI-SECPEP	A375_MHC_IP_R1	1	420.9505310058594	3	420.534937	1258.58298	0.0090482	3.8051E-06	-0.21757	-9.1494E-05	-0.20852	-8.7689E-05	420.5348655679621	28.77	0.30194	28.77	28.694	28.996	0					6	5	2	0	0	0	0.99227	1	8946	8946		2.6312	0	1	1194500			38555	5256	28259	28491	37591	37591					-0.03596702432764687
PESVSRSW	8	Unmodified	_PESVSRSW_					0	0	0		ENST00000561603.5_1_15:41829213-41829366:-|nuORF	ENST00000561603.5_1_15:41829213-41829366:-|nuORF	ENST00000561603.5_1_15:41829213-41829366:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	474.1182556152344	2	474.232699	946.450845	-0.087493	-4.1492E-05	0.026276	1.2461E-05	-0.061217	-2.9031E-05	474.23279627987125	45.273	0.35413	45.273	45.03	45.384	0					8	6	2	0	0	0	0.96266	1	15859	15859		11.64	0	1	1075800			38556	13510	28260	28492	37592	37592					-0.024522626590396612
PESYRNLLMMF	11	Unmodified	_PESYRNLLMMF_					0	0	0			REV__CUL9|p.L917F|1|0.15|ENSG00000112659|chr6:43196808-43196808|C/T|missense_variant	REV__CUL9|p.L917F|1|0.15|ENSG00000112659|chr6:43196808-43196808|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	700.6861572265625	2	700.838691	1399.66283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.54	1	107.3	106.8	107.8	0.75977								0	0	0	0.16147	1	40269	40269		13.615	1.3742	1		+		38557	15940	28261	28493	37593	37593					-0.0210167535481105
PETADLKFR	9	Unmodified	_PETADLKFR_					0	0	0		ENSG00000136144|ENST00000378302|RCBTB1	ENSG00000136144|ENST00000378302|RCBTB1	ENSG00000136144|ENST00000378302|RCBTB1	MULTI-SECPEP	A375_MHC_IP_R1	1	359.9290771484375	3	359.529346	1075.56621	0.12227	4.3961E-05	-0.63208	-0.00022725	-0.50981	-0.00018329	359.52914124186793	33.424	0.60851	33.424	33.14	33.748	0					22	11	3	0	0	0	0.50702	1	10935	10935		23.79	9.5716	1	7086300			38558	4756	28262	28494	37594	37594					0.03144841471953441
PETEQVNGLF	10	Unmodified	_PETEQVNGLF_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MULTI-MSMS	A375_MHC_IP_R2	2	567.1793212890625	2	567.277303	1132.54005	-0.27913	-0.00015834	-0.21265	-0.00012063	-0.49178	-0.00027897	567.277109773678	84.44	0.9653	85.176	84.916	85.882	0.73602					25	18	2	0	0	0	0.080535	1	32079	32079		67.838	20.089	1	2820600			38559	2212	28263	28495	37595	37595					-0.020914724902013404
PETLPNNSCY	10	Unmodified	_PETLPNNSCY_					0	0	0		nc|ENSG00000102524|Q9Y275-2|TNFSF13B;ENSG00000102524|ENST00000375887|TNFSF13B	nc|ENSG00000102524|Q9Y275-2|TNFSF13B	nc|ENSG00000102524|Q9Y275-2|TNFSF13B	MULTI-SECPEP	A375_MHC_IP_R2	2	380.27642822265625	3	379.834218	1136.48082	0.099624	3.784E-05	-2.1799	-0.00082801	-2.0803	-0.00079017	379.8331744833716	27.55	0.25423	28.228	28.047	28.301	0.67857					6	4	2	0	0	0	0.9269	1	9445	9445		0.62683	0	1	763880			38560	2381	28264	28496	37596	37596					-0.08195691776040803
PETSGTQYL	9	Unmodified	_PETSGTQYL_					0	0	0			REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-SECPEP	A375_MHC_IP_R2	2	498.6180725097656	2	498.237647	994.460741	-0.56559	-0.0002818	-1.2537	-0.00062462	-1.8193	-0.00090642	498.2373113703332	64.956	0.40579	65.694	65.562	65.968	0.73811					12	7	2	0	0	0	0.71541	1	24697	24697		11.64	0	1	616060	+		38561	16898	28265	28497	37597	37597					-0.03671119444334181
PETSGTQYL	9	Unmodified	_PETSGTQYL_					0	0	0			REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-MATCH	A375_MHC_IP_R1	1		2	498.237647	994.460741	-0.51535	-0.00025677	-0.48704	-0.00024266	-1.0024	-0.00049943	498.237194586424	65.724	0.40822	65.724	65.462	65.871	0	0.014918	0.00022012	NaN	11.64	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	621180	+		38562	16898	28265	28497							-0.03671119444334181
PEVFTYFFK	9	Unmodified	_PEVFTYFFK_					0	0	0		nc|ENSG00000183605|Q6P4A7-3|SFXN4;nc|ENSG00000183605|Q6P4A7-2|SFXN4;ENSG00000183605|ENST00000355697|SFXN4	nc|ENSG00000183605|Q6P4A7-3|SFXN4	nc|ENSG00000183605|Q6P4A7-3|SFXN4	MULTI-SECPEP	A375_MHC_IP_R1	1	393.9124450683594	3	393.202459	1176.58555	-0.055926	-2.199E-05	-0.076006	-2.9886E-05	-0.13193	-5.1876E-05	393.2022912230552	28.178	0.25136	28.178	28.037	28.288	0					6	4	2	0	0	0	0.76452	1	8608	8608		8.1555	0	1	1769500			38563	8509	28266	28498	37598	37598					0.00431797762826136
PEVGVTKRHI	10	Unmodified	_PEVGVTKRHI_					0	0	0			REV__nc|ENSG00000108107|P46779-4|RPL28	REV__nc|ENSG00000108107|P46779-4|RPL28	MULTI-MSMS	A375_MHC_IP_R1	1	379.6241149902344	3	379.224257	1134.65094	0.12843	4.8704E-05	-1.1882	-0.00045061	-1.0598	-0.0004019	379.2237095587972	28.057	0.40209	28.057	27.786	28.188	0					16	7	3	0	0	0	0.67901	1	8646	8646		14.957	0	1	3144200	+		38564	17517	28267	28499	37599	37599					0.08900212008552444
PEVGVTKRHI	10	Unmodified	_PEVGVTKRHI_					0	0	0			REV__nc|ENSG00000108107|P46779-4|RPL28	REV__nc|ENSG00000108107|P46779-4|RPL28	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	379.224257	1134.65094	0.12843	4.8704E-05	-1.1882	-0.00045061	-1.0598	-0.0004019	379.2237095587972	28.057	0.40209	28.057	27.786	28.188	0	0.040687	-0.00049821	NaN	14.957	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3144200	+		38565	17517	28267	28499							0.08900212008552444
PEVHEPPQEKQ	11	Unmodified	_PEVHEPPQEKQ_					0	0	0		nc|ENSG00000166220|Q96M53|TBATA;ENSG00000166220|ENST00000456372|TBATA	nc|ENSG00000166220|Q96M53|TBATA	nc|ENSG00000166220|Q96M53|TBATA	MSMS	A375_MHC_IP_R1	1	659.1541748046875	2	659.325316	1316.63608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.217	1	78.217	77.717	78.717	0								0	0	0	0.16247	1	28552	28552		4.1895	0	1				38566	7043	28268	28500	37600	37600					-0.009573246500849564
PEVIEKPENP	10	Unmodified	_PEVIEKPENP_					0	0	0		nc|ENSG00000113494|P16471-2|PRLR;ENSG00000113494|ENST00000618457|PRLR;PRLR|p.E387K|1|0.19|ENSG00000113494|chr5:35065799-35065799|C/T|missense_variant;PRLR|p.D376N|1|0.12|ENSG00000113494|chr5:35065832-35065832|C/T|missense_variant	nc|ENSG00000113494|P16471-2|PRLR	nc|ENSG00000113494|P16471-2|PRLR	MULTI-MSMS	A375_MHC_IP_R2	2	576.7005615234375	2	576.300778	1150.587	-0.19118	-0.00011018	0.14431	8.3166E-05	-0.046872	-2.7012E-05	576.3005063826442	32.198	0.35706	32.935	32.755	33.112	0.73692					15	6	3	0	0	0	0.67901	1	11443	11443		22.736	0	1	5767300			38567	3155	28269	28501	37601	37601					0.017733870609617952
PEVLKHLLD	9	Unmodified	_PEVLKHLLD_					0	0	0			REV__ENST00000550803.5_1_12:95650374-95652059:+|nuORF	REV__ENST00000550803.5_1_12:95650374-95652059:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	355.4598388671875	3	355.209725	1062.60735	-0.15423	-5.4785E-05	-0.36097	-0.00012822	-0.5152	-0.000183	355.2095672446026	42.503	0.56162	43.275	42.91	43.472	0.7724					15	10	2	0	0	0	0.76628	1	15761	15761		1.0715	0	1	2181500	+		38568	26038	28270	28502	37602	37602					0.07854602511406483
PEVLLEAPPF	10	Unmodified	_PEVLLEAPPF_					0	0	0		ENST00000301765.9_1_11:60899050-60899611:-|nuORF	ENST00000301765.9_1_11:60899050-60899611:-|nuORF	ENST00000301765.9_1_11:60899050-60899611:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	555.6864013671875	2	556.305332	1110.59611	-0.34637	-0.00019269	2.7641	0.0015377	2.4177	0.001345	556.8058057567642	47.895	0.30257	47.895	47.768	48.071	0					6	5	2	0	0	0	0.9269	1	16858	16858		3.5965	0	1	1406400			38569	10547	28271	28503	37603	37603					0.045237804172757023
PEVSPEEEAQ	10	Unmodified	_PEVSPEEEAQ_					0	0	0			REV__nc|ENSG00000165995|Q08289-6|CACNB2	REV__nc|ENSG00000165995|Q08289-6|CACNB2	MULTI-MSMS	A375_MHC_IP_R1	1	557.18994140625	2	557.748576	1113.4826	-0.8694	-0.00048491	-0.071192	-3.9708E-05	-0.94059	-0.00052461	557.7485086947714	30.108	0.45237	30.108	29.899	30.351	0					18	8	3	0	0	0	0.62155	2	9486	9486;9544		19.257	3.1079	1	8362200	+		38570	15555	28272	28504	37604;37605	37604					-0.0696035948642475
PEVTHQERW	9	Unmodified	_PEVTHQERW_					0	0	0		ENST00000469653.5_1_9:91977319-91982044:-|nuORF;ENST00000492386.5_1_9:91977319-91992066:-|nuORF;nc|ENSG00000187764|Q92854-2|SEMA4D	ENST00000469653.5_1_9:91977319-91982044:-|nuORF	ENST00000469653.5_1_9:91977319-91982044:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	393.9122009277344	3	394.528117	1180.56252	-0.072382	-2.8557E-05	-0.4124	-0.0001627	-0.48479	-0.00019126	394.86218718701605	27.424	0.15331	28.102	27.996	28.149	0.67857					4	2	2	0	0	0	0.55534	1	9376	9376		20.581	15.178	1	969290			38571	12324	28273	28505	37606	37606					-0.02053828301905014
PEWDNEND	8	Unmodified	_PEWDNEND_					0	0	0		nc|ENSG00000070961|P20020-6|ATP2B1;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000070961|P20020-4|ATP2B1;nc|ENSG00000070961|P20020-1|ATP2B1;nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1	nc|ENSG00000070961|P20020-6|ATP2B1	nc|ENSG00000070961|P20020-6|ATP2B1	MULTI-MSMS	A375_MHC_IP_R1	1	509.67156982421875	2	509.691061	1017.36757	-0.52062	-0.00026535	-0.46103	-0.00023498	-0.98165	-0.00050034	509.69076309679986	76.791	0.66216	76.791	76.471	77.133	0					26	12	3	0	0	0	0.7779	1	28108	28108		2.5775	2.5775	1	2922300			38572	1505	28274	28506	37607	37607					-0.1404204389757524
PEWDNEND	8	Unmodified	_PEWDNEND_					0	0	0		nc|ENSG00000070961|P20020-6|ATP2B1;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000070961|P20020-4|ATP2B1;nc|ENSG00000070961|P20020-1|ATP2B1;nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1	nc|ENSG00000070961|P20020-6|ATP2B1	nc|ENSG00000070961|P20020-6|ATP2B1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	509.691061	1017.36757	-0.73382	-0.00037402	-0.28642	-0.00014598	-1.0202	-0.00052001	509.6909110841581	76.128	0.50624	76.868	76.64	77.146	0.74052	0.038325	0.00010144	NaN	2.5775	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2565000			38573	1505	28274	28506							-0.1404204389757524
PEWIRYHRYHG	11	Unmodified	_PEWIRYHRYHG_					0	0	0		ENSG00000137193|ENST00000373509|PIM1;ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1;ENST00000479509.1_1_6:37140348-37141864:+|nuORF	ENSG00000137193|ENST00000373509|PIM1	ENSG00000137193|ENST00000373509|PIM1	MSMS	A375_MHC_IP_R1	1	757.3314208984375	2	757.376009	1512.73747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.06	1	143.06	142.56	143.56	0								0	0	0	0.16334	1	54886	54886		1.3295	0	1				38574	4867	28275	28507	37608	37608					0.0016059156312167033
PEWLLLHRRG	10	Unmodified	_PEWLLLHRRG_					0	0	0			REV__ENST00000471707.5_1_22:20040041-20043513:+|nuORF	REV__ENST00000471707.5_1_22:20040041-20043513:+|nuORF	MSMS	A375_MHC_IP_R2	2	638.90771484375	2	638.867289	1275.72002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.36	1	119.89	119.39	120.39	0.5321								0	0	0	0.15332	1	45466	45466		10.074	0	1		+		38575	25124	28276	28508	37609	37609					0.09319296028115787
PEWLREIEQY	10	Unmodified	_PEWLREIEQY_					0	0	0		nc|ENSG00000137502|Q15771-2|RAB30;ENSG00000137502|ENST00000527633|RAB30	nc|ENSG00000137502|Q15771-2|RAB30	nc|ENSG00000137502|Q15771-2|RAB30	MSMS	A375_MHC_IP_R1	1	681.8408813476562	2	681.838059	1361.66157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.06	1	111.06	110.56	111.56	0								0	0	0	0.15557	1	40714	40714		2.7352	0.23671	1				38576	4890	28277	28509	37610	37610					-0.0047985012763547275
PEWQQDEF	8	Unmodified	_PEWQQDEF_					0	0	0		nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9;ENST00000515773.5_1_6:43164260-43192180:+|nuORF;ENST00000503766.5_1_6:43191760-43192180:+|nuORF	nc|ENSG00000112659|Q8IWT3-3|CUL9	nc|ENSG00000112659|Q8IWT3-3|CUL9	MSMS	A375_MHC_IP_R2	2	539.7023315429688	2	539.727446	1077.44034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.09	1	108.84	108.34	109.34	0.75436								0	0	0	0.16876	1	40823	40823		14.582	5.2343	1				38577	3099	28278	28510	37611	37611					-0.09528290104140069
PEWRFNRLRLN	11	Unmodified	_PEWRFNRLRLN_					0	0	0		nc|ENSG00000160882|P15538-2|CYP11B1;ENSG00000179142|ENST00000323110|CYP11B2;ENSG00000160882|ENST00000292427|CYP11B1	nc|ENSG00000160882|P15538-2|CYP11B1;ENSG00000160882|ENST00000292427|CYP11B1	nc|ENSG00000160882|P15538-2|CYP11B1	MULTI-SECPEP	A375_MHC_IP_R1	1	751.3119506835938	2	750.912759	1499.81096	-0.80461	-0.00060419	-1.4099	-0.0010587	-2.2145	-0.0016629	750.9118089851171	135.82	0.2045	135.82	135.74	135.95	0					5	3	2	0	0	0	0.99985	1	52361	52361		1.0715	0	1	3376600			38578	14714;6447	28279	28511	37612	37612					0.08105140005613976
PEWRRGQWR	9	Unmodified	_PEWRRGQWR_					0	0	0			REV__nc|ENSG00000149922|O95947-2|TBX6	REV__nc|ENSG00000149922|O95947-2|TBX6	MSMS	A375_MHC_IP_R1	1	635.74560546875	2	635.831237	1269.64792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.09	1	125.09	124.59	125.59	0								0	0	0	0.15468	1	47413	47413		13.906	0.29118	1		+		38579	19700	28280	28512	37613	37613					0.02388381674404627
PEYHYRGEQ	9	Unmodified	_PEYHYRGEQ_					0	0	0			REV__ENSG00000074047|ENST00000361492|GLI2	REV__ENSG00000074047|ENST00000361492|GLI2	MULTI-MSMS	A375_MHC_IP_R2	2	589.678955078125	2	589.764894	1177.51524	-0.49991	-0.00029483	0.22974	0.00013549	-0.27018	-0.00015934	589.765123443679	27.469	0.45614	28.148	27.945	28.401	0.67857					16	8	3	0	0	0	0.65721	1	9487	9487		10.824	1.4408	1	5156700	+		38580	16629	28281	28513	37614	37614					-0.06642107572884015
PEYVVPYTI	9	Unmodified	_PEYVVPYTI_					0	0	0		nc|ENSG00000083642|Q9NTI5-2|PDS5B;ENSG00000083642|ENST00000315596|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	MSMS	A375_MHC_IP_R1	1	360.92303466796875	3	360.858581	1079.55391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.592	1	28.592	28.092	29.092	0								0	0	0	0.14905	1	8842	8842		16.149	6.6051	1				38581	1783	28282	28514	37615	37615					0.017318050088988457
PFACEMCG	8	Unmodified	_PFACEMCG_					0	0	0		ENSG00000162676|ENST00000294702|GFI1	ENSG00000162676|ENST00000294702|GFI1	ENSG00000162676|ENST00000294702|GFI1	MULTI-SECPEP	A375_MHC_IP_R1	1	857.6994018554688	1	857.299043	856.291767	-0.66615	-0.00057109	0.75064	0.00064353	0.084493	7.2436E-05	857.2995268296592	144.74	0.27144	144.74	144.65	144.92	0					7	5	2	0	0	0	0.972	1	55506	55506		0.69038	0	1	1614800			38582	6576	28283	28515	37616	37616					-0.14212758874691644
PFACEMCG	8	Unmodified	_PFACEMCG_					0	0	0		ENSG00000162676|ENST00000294702|GFI1	ENSG00000162676|ENST00000294702|GFI1	ENSG00000162676|ENST00000294702|GFI1	MULTI-MSMS	A375_MHC_IP_R2	2	857.6985473632812	1	857.299043	856.291767	-0.44793	-0.00038401	0.3173	0.00027202	-0.13063	-0.00011199	857.299086616097	144.76	0.28932	144.78	144.69	144.98	0.021408					8	6	2	0	0	0	0.77842	1	56541	56541		0.69038	0	1	1480600			38583	6576	28283	28515	37617	37617					-0.14212758874691644
PFACEMCG	8	Unmodified	_PFACEMCG_					0	0	0		ENSG00000162676|ENST00000294702|GFI1	ENSG00000162676|ENST00000294702|GFI1	ENSG00000162676|ENST00000294702|GFI1	MULTI-SECPEP	A375_MHC_IP_R2	2	857.6982421875	1	857.299043	856.291767	-0.44809	-0.00038415	0.10712	9.1837E-05	-0.34096	-0.00029231	857.2988879524752	144.13	0.23462	144.15	144.04	144.27	0.024414					6	4	2	0	0	0	0.972	1	56337	56337		0.69038	0	1	511200			38584	6576	28283	28515	37618	37618					-0.14212758874691644
PFACEMCG	8	Unmodified	_PFACEMCG_					0	0	0		ENSG00000162676|ENST00000294702|GFI1	ENSG00000162676|ENST00000294702|GFI1	ENSG00000162676|ENST00000294702|GFI1	MULTI-MATCH	A375_MHC_IP_R1	1		1	857.299043	856.291767	-0.66616	-0.0005711	0.28919	0.00024792	-0.37697	-0.00032318	857.2991421164367	144.49	0.13986	144.49	144.45	144.59	0	0.17167	2.2569E-05	NaN	0.69038	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2071700			38585	6576	28283	28515							-0.14212758874691644
PFACEMCG	8	Unmodified	_PFACEMCG_					0	0	0		ENSG00000162676|ENST00000294702|GFI1	ENSG00000162676|ENST00000294702|GFI1	ENSG00000162676|ENST00000294702|GFI1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	857.299043	856.291767	-0.44793	-0.00038401	0.3173	0.00027202	-0.13063	-0.00011199	857.299086616097	144.76	0.28932	144.78	144.69	144.98	0.021408	0.018853	-0.00016927	NaN	0.69038	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1480600			38586	6576	28283	28515							-0.14212758874691644
PFACNDCG	8	Unmodified	_PFACNDCG_					0	0	0		ENSG00000169981|ENST00000396056|ZNF35	ENSG00000169981|ENST00000396056|ZNF35	ENSG00000169981|ENST00000396056|ZNF35	MSMS	A375_MHC_IP_R1	1	413.663330078125	2	413.646556	825.278559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.069	1	29.069	28.569	29.569	0								0	0	0	0.16876	1	9044	9044		0.79363	0	1				38587	7460	28284	28516	37619	37619					-0.14106873662433372
PFAILAGW	8	Unmodified	_PFAILAGW_					0	0	0			REV__ENST00000445628.5_1_22:38452434-38453409:+|nuORF	REV__ENST00000445628.5_1_22:38452434-38453409:+|nuORF	MSMS	A375_MHC_IP_R2	2	437.6629943847656	2	437.744714	873.474875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.246	1	75.984	75.484	76.484	0.73752								0	0	0	0.16876	1	28560	28560		11.114	1.767	1		+		38588	24846	28285	28517	37620	37620					0.03307622565273505
PFARASRSDY	10	Unmodified	_PFARASRSDY_					0	0	0			REV__nc|ENSG00000145216|Q6UN15-3|FIP1L1	REV__nc|ENSG00000145216|Q6UN15-3|FIP1L1	MULTI-MSMS	A375_MHC_IP_R1	1	585.68798828125	2	585.288537	1168.56252	-0.23551	-0.00013784	1.9198	0.0011236	1.6843	0.00098579	585.2880093965318	88.002	0.96662	88.002	87.34	88.307	0					28	18	3	0	0	0	0.70329	2	32291	32291;32340		10.824	0.75	1	4090800	+		38589	19464	28286	28518	37621;37622	37621					-0.015018283019117007
PFATAGIF	8	Unmodified	_PFATAGIF_					0	0	0		ENSG00000259916|ENST00000561882|AQP7B;nc|ENSG00000259916|A0A075B734|AQP7B	ENSG00000259916|ENST00000561882|AQP7B	ENSG00000259916|ENST00000561882|AQP7B	MULTI-MSMS	A375_MHC_IP_R1	1	412.6210632324219	2	412.221072	822.42759	0.2946	0.00012144	-0.14048	-5.7908E-05	0.15412	6.3533E-05	412.2208945432164	72.605	0.81098	72.605	72.22	73.031	0					28	15	3	0	0	0	0.72761	1	26394	26394		26.341	0	1	2707400			38590	9927	28287	28519	37623	37623					0.009273432942904947
PFAVPIRSSF	10	Unmodified	_PFAVPIRSSF_					0	0	0			REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2	REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MULTI-SECPEP	A375_MHC_IP_R1	1	560.16845703125	2	560.811116	1119.60768	-0.34114	-0.00019132	2.0383	0.0011431	1.6971	0.00095177	560.8133192063838	43.402	0.20223	43.402	43.249	43.451	0					5	3	2	0	0	0	0.89109	1	15082	15082		3.9444	0	1	774330	+		38591	17302	28288	28520	37624	37624					0.052660222312852056
PFDKMLPNY	9	Unmodified	_PFDKMLPNY_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MSMS	A375_MHC_IP_R1	1	562.6886596679688	2	562.775885	1123.53722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.221	1	93.221	92.721	93.721	0								0	0	0	0.1535	1	34266	34266		15.847	1.0089	1		+		38592	22253	28289	28521	37625	37625					-0.01961019148689047
PFDPLQDLY	9	Unmodified	_PFDPLQDLY_					0	0	0			REV__ENSG00000068697|ENST00000175091|LAPTM4A	REV__ENSG00000068697|ENST00000175091|LAPTM4A	MSMS	A375_MHC_IP_R1	1	554.4509887695312	2	554.27149	1106.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.15	1	100.15	99.65	100.65	0								0	0	0	0.15486	1	36806	36806		8.5933	0	1		+		38593	16544	28290	28522	37626	37626					-0.020576695135105183
PFEKISEFI	9	Unmodified	_PFEKISEFI_					0	0	0		ENST00000590008.5_1_19:38161161-38167293:-|nuORF	ENST00000590008.5_1_19:38161161-38167293:-|nuORF	ENST00000590008.5_1_19:38161161-38167293:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	554.7090454101562	2	555.297507	1108.58046	-1.018	-0.00056527	0.32751	0.00018186	-0.69045	-0.0003834	555.297813650215	124.08	0.34949	124.08	123.94	124.29	0					9	6	2	0	0	0	0.67483	1	46638	46638		20.454	5.6154	1	7797100			38594	13779	28291	28523	37627	37627					0.030514939002614483
PFFCWAWPPR	10	Unmodified	_PFFCWAWPPR_					0	0	0		nc|ENSG00000181984|A6NN73|GOLGA8CP;ENST00000446144.2_1_15:20773467-20778061:+|nuORF	nc|ENSG00000181984|A6NN73|GOLGA8CP	nc|ENSG00000181984|A6NN73|GOLGA8CP	MSMS	A375_MHC_IP_R2	2	653.7630615234375	2	653.813136	1305.61172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.67	1	103.43	102.93	103.93	0.76428								0	0	0	0.15464	1	38896	38896		10.074	6.1295	1				38595	14799	28292	28524	37628	37628					-0.028862115466608884
PFFFFYMSY	9	Unmodified	_PFFFFYMSY_					0	0	0		ENST00000498309.1_1_5:132203011-132203167:+|nuORF	ENST00000498309.1_1_5:132203011-132203167:+|nuORF	ENST00000498309.1_1_5:132203011-132203167:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	416.4308776855469	3	416.852661	1247.53615	0.36391	0.0001517	2.0191	0.00084167	2.383	0.00099337	416.8535565859398	40.564	0.40736	40.564	40.355	40.762	0					12	7	2	0	0	0	0.79837	1	13882	13882		1.1933	0	1	1488300			38596	12758	28293	28525	37629	37629					-0.07771233517587461
PFFFGIFLIIY	11	Unmodified	_PFFFGIFLIIY_					0	0	0		ENSG00000112462|ENST00000396806|OR12D3	ENSG00000112462|ENST00000396806|OR12D3	ENSG00000112462|ENST00000396806|OR12D3	MULTI-SECPEP	A375_MHC_IP_R1	1	689.0850830078125	2	688.886293	1375.75803	-0.47522	-0.00032737	1.8115	0.0012479	1.3363	0.00092055	689.3889616095529	106.04	0.25359	106.04	105.81	106.06	0					5	4	2	0	0	0	0.98977	1	38843	38843		10.824	2.0785	1	1014300			38597	3087	28294	28526	37630	37630					0.08518369170246842
PFFLLSLHPY	10	Unmodified	_PFFLLSLHPY_					0	0	0			REV__ENST00000299964.3_1_11:114166574-114166922:+|nuORF	REV__ENST00000299964.3_1_11:114166574-114166922:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	616.6560668945312	2	617.336967	1232.65938	-0.42386	-0.00026166	-0.41552	-0.00025651	-0.83937	-0.00051818	617.8365088567563	83.71	0.30338	83.71	83.533	83.837	0					6	5	2	0	0	0	0.9269	1	30589	30589		10.824	0	1	1075300	+		38598	23410	28295	28527	37631	37631					0.0523576592520385
PFFPGINPQV	10	Unmodified	_PFFPGINPQV_					0	0	0			REV__ZFPM2|p.S491F|1|0.29|ENSG00000169946|chr8:105801554-105801554|C/T|missense_variant	REV__ZFPM2|p.S491F|1|0.29|ENSG00000169946|chr8:105801554-105801554|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	372.5950622558594	3	372.53432	1114.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.014	1	50.014	49.514	50.514	0								0	0	0	0.15522	1	17703	17703		3.8763	2.1341	1		+		38599	29021	28296	28528	37632	37632					0.028423333399587136
PFFRKHQARAL	11	Unmodified	_PFFRKHQARAL_					0	0	0			REV__ENST00000450302.2_1_7:64863281-64863353:+|nuORF	REV__ENST00000450302.2_1_7:64863281-64863353:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	686.79443359375	2	685.893838	1369.77312	-0.47083	-0.00032294	-0.75756	-0.00051961	-1.2284	-0.00084254	686.3950864132929	140.64	0.76802	140.68	140.4	141.17	0.042175					30	14	4	0	0	0	0.72877	1	55062	55062		10.074	3.3508	1	6297800	+		38600	24883	28297	28529	37633	37633					0.1030267381079284
PFFSLNINV	9	Unmodified	_PFFSLNINV_					0	0	0		ENST00000420095.1_1_3:8263573-8263864:-|nuORF	ENST00000420095.1_1_3:8263573-8263864:-|nuORF	ENST00000420095.1_1_3:8263573-8263864:-|nuORF	MSMS	A375_MHC_IP_R2	2	525.7103271484375	2	525.784567	1049.55458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.906	1	98.662	98.162	99.162	0.75588								0	0	0	0.1535	1	37154	37154		15.847	0	1				38601	11723	28298	28530	37634	37634					0.031786444485987886
PFFYCLKLHS	10	Unmodified	_PFFYCLKLHS_					0	0	0		ENST00000258991.7_1_17:62225146-62225452:-|nuORF	ENST00000258991.7_1_17:62225146-62225452:-|nuORF	ENST00000258991.7_1_17:62225146-62225452:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	628.2192993164062	2	627.820627	1253.6267	-0.88498	-0.00055561	-0.52663	-0.00033063	-1.4116	-0.00088624	627.8202607580857	40.346	0.35453	41.12	40.879	41.234	0.77451					11	6	2	0	0	0	0.70496	1	14963	14963		10.074	1.9184	1	2579300			38602	10259	28299	28531	37635	37635					0.010032355306748286
PFGAPAGA	8	Unmodified	_PFGAPAGA_					0	0	0		ENSG00000122705|ENST00000345519|CLTA;nc|ENSG00000122705|P09496-4|CLTA;nc|ENSG00000122705|P09496-3|CLTA;nc|ENSG00000122705|P09496|CLTA;nc|ENSG00000122705|P09496-5|CLTA	ENSG00000122705|ENST00000345519|CLTA	ENSG00000122705|ENST00000345519|CLTA	MULTI-MSMS	A375_MHC_IP_R2	2	687.3936157226562	1	687.346052	686.338775	-0.65009	-0.00044684	0.61787	0.00042469	-0.032219	-2.2145E-05	687.3463100375078	74.056	1.3251	74.793	73.838	75.163	0.73752					48	25	2	0	0	0	0.77781	1	28153	28153		2.8892	0	1	4071500			38603	3802	28300	28532	37636	37636					-0.016940719453828024
PFGHGGGLG	9	Unmodified	_PFGHGGGLG_					0	0	0			REV__nc|ENSG00000126456|Q14653-4|IRF3	REV__nc|ENSG00000126456|Q14653-4|IRF3	MSMS	A375_MHC_IP_R2	2	399.7467346191406	2	399.698295	797.382037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.281	1	28.96	28.46	29.46	0.67857								0	0	0	0.15486	1	9748	9748		5.2307	0.47466	1		+		38604	27210	28301	28533	37637	37637					-0.024758821680961773
PFGKAAAG	8	Unmodified	_PFGKAAAG_					0	0	0		SPIN3|p.H56Kfs*7|1|0.25|ENSG00000204271|chrX:56994774-56994783|CCATCCGTGC/-|frameshift_variant;nc|ENSG00000204271|Q5JUX0-2|SPIN3;nc|nan|Q8N4M7|C10orf126;ENSG00000204271|ENST00000374919|SPIN3	SPIN3|p.H56Kfs*7|1|0.25|ENSG00000204271|chrX:56994774-56994783|CCATCCGTGC/-|frameshift_variant	SPIN3|p.H56Kfs*7|1|0.25|ENSG00000204271|chrX:56994774-56994783|CCATCCGTGC/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	360.0979309082031	2	359.697764	717.380974	0.22216	7.9911E-05	0.1887	6.7875E-05	0.41086	0.00014779	359.69778117486567	40.634	0.45654	40.634	40.406	40.863	0					13	8	2	0	0	0	0.972	1	13989	13989		2.5775	0	1	4099400			38605	9422	28302	28534	37638	37638					0.010979034629826856
PFGNTNGQSV	10	Unmodified	_PFGNTNGQSV_					0	0	0			REV__nc|ENSG00000118777|Q9UNQ0-2|ABCG2	REV__nc|ENSG00000118777|Q9UNQ0-2|ABCG2	MULTI-MSMS	A375_MHC_IP_R1	1	510.9261779785156	2	510.740888	1019.46722	-0.42876	-0.00021899	-0.31939	-0.00016312	-0.74815	-0.00038211	510.7405987322258	25.115	0.55803	25.115	24.953	25.511	0					19	10	2	0	0	0	0.10503	1	7268	7268		62.573	18.714	1	8322800	+		38606	18053	28303	28535	37639	37639					-0.041731814929448774
PFGNTNGQSV	10	Unmodified	_PFGNTNGQSV_					0	0	0			REV__nc|ENSG00000118777|Q9UNQ0-2|ABCG2	REV__nc|ENSG00000118777|Q9UNQ0-2|ABCG2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	510.740888	1019.46722	-0.42876	-0.00021899	-0.31939	-0.00016312	-0.74815	-0.00038211	510.7405987322258	25.115	0.55803	25.115	24.953	25.511	0	-0.092744	-0.00026508	NaN	62.573	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8322800	+		38607	18053	28303	28535							-0.041731814929448774
PFGNTNGQSV	10	Unmodified	_PFGNTNGQSV_					0	0	0			REV__nc|ENSG00000118777|Q9UNQ0-2|ABCG2	REV__nc|ENSG00000118777|Q9UNQ0-2|ABCG2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	510.740888	1019.46722	-1.1164	-0.00057019	0.14625	7.4695E-05	-0.97014	-0.00049549	510.7408416464767	24.657	0.50789	25.3	25.06	25.568	0.64368	0.092744	0.00021056	NaN	62.573	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4691300	+		38608	18053	28303	28535							-0.041731814929448774
PFHWDVYNILY	11	Unmodified	_PFHWDVYNILY_					0	0	0			REV__ENST00000532784.5_1_11:74303703-74306426:+|nuORF	REV__ENST00000532784.5_1_11:74303703-74306426:+|nuORF	MSMS	A375_MHC_IP_R1	1	489.6325988769531	3	489.574955	1465.70304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.806	1	52.806	52.306	53.306	0								0	0	0	0.16269	1	18798	18798		4.7159	1.6437	1		+		38609	25869	28304	28536	37640	37640					-0.0111866936831575
PFIKTYRRKIF	11	Unmodified	_PFIKTYRRKIF_					0	0	0			REV__tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1	REV__tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1	MSMS	A375_MHC_IP_R2	2	734.9422607421875	2	734.942996	1467.87144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.38	1	144.4	143.9	144.9	0.024414								0	0	0	0.16353	1	56397	56397		0.35063	0	1		+		38610	28689	28305	28537	37641	37641					0.15621857335941058
PFILKKDRRQW	11	Unmodified	_PFILKKDRRQW_					0	0	0		ENST00000472487.5_1_1:59122047-59122251:-|nuORF	ENST00000472487.5_1_1:59122047-59122251:-|nuORF	ENST00000472487.5_1_1:59122047-59122251:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	743.8334350585938	2	743.935702	1485.85685	-0.8398	-0.00062476	0.79422	0.00059085	-0.045575	-3.3905E-05	744.4376223879156	137.56	1.0783	137.56	136.82	137.9	0					27	20	2	0	0	0	1.0007	1	52721	52721		1.4819	1.4819	1	2912600			38611	12373	28306	28538	37642	37642					0.13335785187814508
PFISPKRWQKI	11	Unmodified	_PFISPKRWQKI_					0	0	0		ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	MSMS	A375_MHC_IP_R1	1	700.810546875	2	700.414072	1398.81359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.99	1	143.99	143.49	144.49	0								0	0	0	0.16334	1	55228	55228		1.3295	0	1				38612	8697	28307	28539	37643	37643					0.13013595410529888
PFKIVPLEMRP	11	Unmodified	_PFKIVPLEMRP_					0	0	0		ENST00000444637.6_2_19:36249067-36250693:+|nuORF;ENST00000545674.5_2_19:36250210-36250693:+|nuORF	ENST00000444637.6_2_19:36249067-36250693:+|nuORF	ENST00000444637.6_2_19:36249067-36250693:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	663.6279907226562	2	663.883758	1325.75296	-0.89692	-0.00059545	0.019681	1.3066E-05	-0.87724	-0.00058239	663.8836969989843	142.94	0.55496	142.94	142.59	143.14	0					17	10	2	0	0	0	0.99791	1	54815	54815		4.897	1.9018	1	1181800			38613	12018	28308	28540	37644	37644					0.10311742035946736
PFKIVPLEMRP	11	Unmodified	_PFKIVPLEMRP_					0	0	0		ENST00000444637.6_2_19:36249067-36250693:+|nuORF;ENST00000545674.5_2_19:36250210-36250693:+|nuORF	ENST00000444637.6_2_19:36249067-36250693:+|nuORF	ENST00000444637.6_2_19:36249067-36250693:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	663.883758	1325.75296	-0.65848	-0.00043715	-0.10635	-7.0607E-05	-0.76483	-0.00050776	663.8836777808153	143	0.60646	143.03	142.64	143.24	0.030731	0.047317	-7.1319E-05	NaN	4.897	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2195500			38614	12018	28308	28540							0.10311742035946736
PFKRRRRRAQT	11	Unmodified	_PFKRRRRRAQT_					0	0	0			REV__ENST00000475854.1_1_X:100914419-100914797:-|nuORF	REV__ENST00000475854.1_1_X:100914419-100914797:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	491.6991271972656	3	491.299153	1470.87563	-0.33976	-0.00016692	0.13005	6.3893E-05	-0.20971	-0.00010303	491.29909963463336	138.4	2.4305	138.49	138.11	140.54	0.083969					116	47	5	0	0	0	0.73934	1	54453	54453		0	0	1	31721000	+		38615	23611	28309	28541	37645	37645					0.15902759602272454
PFKRTAKVVT	10	Unmodified	_PFKRTAKVVT_					0	0	0		ENST00000585075.1_1_17:73267828-73268089:+|nuORF	ENST00000585075.1_1_17:73267828-73268089:+|nuORF	ENST00000585075.1_1_17:73267828-73268089:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	382.27264404296875	3	382.904636	1145.69208	0.27621	0.00010576	-0.27259	-0.00010438	0.0036154	1.3844E-06	382.9045568402227	32.018	0.35825	32.018	31.769	32.127	0					12	6	3	0	0	0	0.94269	1	10278	10278		1.5923	0.81575	1	1556100			38616	13712	28310	28542	37646	37646					0.1250597304801886
PFLDIQKRF	9	Unmodified	_PFLDIQKRF_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-SECPEP	A375_MHC_IP_R1	1	388.9574279785156	3	388.557236	1162.64988	0.72829	0.00028298	-0.60727	-0.00023596	0.12103	4.7026E-05	388.5570781595518	69.453	0.71234	69.453	69.02	69.732	0					16	13	2	0	0	0	0.41731	1	25229	25229		35.612	24.118	1	2099200			38617	7330	28311	28543	37647	37647					0.07505997639646012
PFLDIQKRF	9	Unmodified	_PFLDIQKRF_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-SECPEP	A375_MHC_IP_R2	2	388.9571533203125	3	388.557236	1162.64988	-0.045727	-1.7767E-05	-0.13627	-5.2947E-05	-0.18199	-7.0714E-05	388.5572870248688	68.702	0.70909	69.437	69.171	69.88	0.73511					24	13	3	0	0	0	0.41731	1	26026	26026		42.312	20.513	1	2138100			38618	7330	28311	28543	37648	37648					0.07505997639646012
PFLDTYTDMSW	11	Unmodified	_PFLDTYTDMSW_					0	0	0		tr|U7SS27|U7SS27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01518PE=4SV=1	tr|U7SS27|U7SS27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01518PE=4SV=1	tr|U7SS27|U7SS27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01518PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	688.7536010742188	2	688.297378	1374.5802	-0.5706	-0.00039274	4.161	0.002864	3.5904	0.0024713	688.2989426635837	109.36	0.3025	110.11	109.98	110.28	0.74684					7	5	2	0	0	0	0.73332	1	41320	41320		5.7319	2.1354	1	1307200			38619	29623	28312	28544	37649	37649					-0.09210293881938014
PFLENCDYYI	10	Unmodified	_PFLENCDYYI_					0	0	0		tr|U7SWE8|U7SWE8_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01006PE=4SV=1	tr|U7SWE8|U7SWE8_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01006PE=4SV=1	tr|U7SWE8|U7SWE8_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01006PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	425.6519470214844	3	426.190002	1275.54818	-0.11649	-4.9646E-05	-2.1882	-0.0009326	-2.3047	-0.00098225	426.1886404923739	50.707	0.20116	50.707	50.613	50.814	0					5	3	2	0	0	0	0.94514	1	17961	17961		2.086	0	1	536130			38620	29806	28313	28545	37650	37650					-0.07857661565071794
PFLHLARIIWR	11	Unmodified	_PFLHLARIIWR_					0	0	0			REV__CYP4Z1|p.M39I|2|0.52|ENSG00000186160|chr1:47067607-47067607|G/A|missense_variant	REV__CYP4Z1|p.M39I|2|0.52|ENSG00000186160|chr1:47067607-47067607|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	711.8126220703125	2	711.430056	1420.84556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.52	1	144.55	144.05	145.05	0.024414								0	0	0	0.16353	1	56450	56450		0.35063	0	1		+		38621	15959	28314	28546	37651	37651					0.15197007884353297
PFLIIVLFI	9	Unmodified	_PFLIIVLFI_					0	0	0			REV__ENST00000396004.2_1_12:25120063-25120186:-|nuORF	REV__ENST00000396004.2_1_12:25120063-25120186:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	538.4576416015625	2	537.851722	1073.68889	-0.57733	-0.00031052	-2.2565	-0.0012137	-2.8338	-0.0015242	537.8501118169129	92.185	0.35384	92.185	91.857	92.211	0					10	6	2	0	0	0	0.71977	1	33853	33853		5.2307	0	1	1166500	+		38622	24333	28315	28547	37652	37652					0.15499329941303586
PFLIIVLFI	9	Unmodified	_PFLIIVLFI_					0	0	0			REV__ENST00000396004.2_1_12:25120063-25120186:-|nuORF	REV__ENST00000396004.2_1_12:25120063-25120186:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	537.851722	1073.68889	-0.57733	-0.00031052	-2.2565	-0.0012137	-2.8338	-0.0015242	537.8501118169129	92.185	0.35384	92.185	91.857	92.211	0	0	0	NaN	5.2307	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1166500	+		38623	24333	28315	28547							0.15499329941303586
PFLILAFLA	9	Unmodified	_PFLILAFLA_					0	0	0		nc|ENSG00000036565|P54219-2|SLC18A1;nc|ENSG00000036565|P54219-3|SLC18A1;ENSG00000036565|ENST00000276373|SLC18A1	nc|ENSG00000036565|P54219-2|SLC18A1	nc|ENSG00000036565|P54219-2|SLC18A1	MULTI-SECPEP	A375_MHC_IP_R2	2	503.2125549316406	2	502.812596	1003.61064	-0.45098	-0.00022676	1.0039	0.00050477	0.55291	0.00027801	502.81300579988533	138.23	0.30362	138.32	138.22	138.52	0.083969					9	5	3	0	0	0	0.73662	1	54233	54233		14.582	0	1	979570			38624	1140	28316	28548	37653	37653					0.10897897356073827
PFLKGTGQ	8	Unmodified	_PFLKGTGQ_					0	0	0			REV__ENST00000344629.11_1_3:9798246-9798938:+|nuORF	REV__ENST00000344629.11_1_3:9798246-9798938:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	424.29339599609375	2	424.237253	846.459953	-0.13845	-5.8735E-05	0.81683	0.00034653	0.67838	0.0002878	424.2375604904965	58.151	0.45611	58.151	57.974	58.43	0					10	8	2	0	0	0	0.77562	1	20873	20873		10.824	10.824	1	953660	+		38625	23762	28317	28549	37654	37654					0.030581306972976563
PFLKGTGQ	8	Unmodified	_PFLKGTGQ_					0	0	0			REV__ENST00000344629.11_1_3:9798246-9798938:+|nuORF	REV__ENST00000344629.11_1_3:9798246-9798938:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	424.237253	846.459953	-0.13845	-5.8735E-05	0.81683	0.00034653	0.67838	0.0002878	424.2375604904965	58.151	0.45611	58.151	57.974	58.43	0	0.069348	0.00032713	NaN	10.824	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	953660	+		38626	23762	28317	28549							0.030581306972976563
PFLKGTGQ	8	Unmodified	_PFLKGTGQ_					0	0	0			REV__ENST00000344629.11_1_3:9798246-9798938:+|nuORF	REV__ENST00000344629.11_1_3:9798246-9798938:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	424.237253	846.459953	-0.5291	-0.00022446	0.36704	0.00015571	-0.16205	-6.8749E-05	424.2374288472803	57.264	0.5103	58.013	57.711	58.221	0.74895	-0.069348	-5.4506E-05	NaN	10.824	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	939110	+		38627	23762	28317	28549							0.030581306972976563
PFLKKEKRRN	10	Unmodified	_PFLKKEKRRN_					0	0	0			REV__AFF2|p.E910K|1|0.87|ENSG00000155966|chrX:148962752-148962752|G/A|missense_variant	REV__AFF2|p.E910K|1|0.87|ENSG00000155966|chrX:148962752-148962752|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	658.3016967773438	2	658.401496	1314.78844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.29	1	144.29	143.79	144.79	0								0	0	0	0.15591	1	55336	55336		1.6526	0.45928	1		+		38628	15340	28318	28550	37655	37655					0.14363540607973846
PFLLDSAPC	9	Unmodified	_PFLLDSAPC_					0	0	0		ENST00000439871.1_1_2:218925948-218930359:-|nuORF	ENST00000439871.1_1_2:218925948-218930359:-|nuORF	ENST00000439871.1_1_2:218925948-218930359:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	482.1359558105469	2	481.736228	961.457904	-0.50679	-0.00024414	0.18856	9.0836E-05	-0.31823	-0.0001533	481.7362316206346	83.949	0.92089	84.689	84.254	85.175	0.73962					42	17	3	0	0	0	0.3054	1	31833	31833		30.225	5.5509	1	10782000			38629	11967	28319	28551	37656	37656					-0.024366661028466297
PFLLVMKPLSY	11	Unmodified	_PFLLVMKPLSY_					0	0	0		ENST00000295951.7_1_3:57913451-57913754:+|nuORF	ENST00000295951.7_1_3:57913451-57913754:+|nuORF	ENST00000295951.7_1_3:57913451-57913754:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	654.7741088867188	2	654.375235	1306.73592	-0.66389	-0.00043443	-0.80145	-0.00052445	-1.4653	-0.00095888	654.3746289919789	132.33	0.75995	132.33	132.08	132.84	0					26	14	2	0	0	0	0.73636	1	51017	51017		1.3295	0	1	20063000			38630	10500	28320	28552	37657	37657					0.09481821430176751
PFLPEAGG	8	Unmodified	_PFLPEAGG_					0	0	0			REV__nc|ENSG00000160271|Q12967-6|RALGDS	REV__nc|ENSG00000160271|Q12967-6|RALGDS	MSMS	A375_MHC_IP_R1	1	394.1272277832031	2	394.202879	786.391205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.486	1	26.486	25.986	26.986	0								0	0	0	0.16876	1	7899	7899		9.3474	3.587	1		+		38631	20156	28321	28553	37658	37658					-0.010535336024304343
PFLRKRMDLLF	11	Unmodified	_PFLRKRMDLLF_					0	0	0		ENST00000494757.5_1_17:38434473-38434674:+|nuORF	ENST00000494757.5_1_17:38434473-38434674:+|nuORF	ENST00000494757.5_1_17:38434473-38434674:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	718.816162109375	2	718.415757	1434.81696	-0.93088	-0.00066876	0.80256	0.00057657	-0.12832	-9.2184E-05	718.4161452864954	142.34	0.65829	142.34	141.88	142.54	0					45	12	5	0	0	0	1.0008	1	54535	54535		0.30703	0	1	11658000			38632	12695	28322	28554	37659	37659					0.11694522192919976
PFMMTMTM	8	Unmodified	_PFMMTMTM_					0	0	0			REV__ENST00000534003.5_1_11:47776147-47786836:-|nuORF	REV__ENST00000534003.5_1_11:47776147-47786836:-|nuORF	MSMS	A375_MHC_IP_R2	2	495.2032775878906	2	495.201795	988.389038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.49	1	126.79	126.29	127.29	0.2951								0	0	0	0.16876	1	49488	49488		5.7604	2.8712	1		+		38633	25886	28323	28555	37660	37660					-0.1056211299004417
PFPDVSINY	9	Unmodified	_PFPDVSINY_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	A375_MHC_IP_R1	1	526.1405639648438	2	526.258382	1050.50221	-0.50182	-0.00026409	2.4411	0.0012846	1.9393	0.0010205	526.2593873057024	61.521	0.96682	61.521	60.77	61.737	0					27	18	2	0	0	0	0.16229	1	21948	21948		57.471	2.6978	1	10844000	+		38634	16347	28324	28556	37661	37661					-0.021019386850184674
PFPGPIPN	8	Unmodified	_PFPGPIPN_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	A375_MHC_IP_R1	1	420.12615966796875	2	419.726521	837.438489	0.16136	6.7727E-05	-0.53307	-0.00022374	-0.37171	-0.00015602	419.72622021072624	77.765	0.76521	77.765	77.436	78.201	0					26	14	3	0	0	0	0.64599	1	28406	28406		42.968	12.77	1	1429500		+	38635	582	28325	28557	37662	37662					0.013267456685639445
PFPGPIPN	8	Unmodified	_PFPGPIPN_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	A375_MHC_IP_R2	2	420.1260681152344	2	419.726521	837.438489	-0.086487	-3.6301E-05	-0.24908	-0.00010455	-0.33557	-0.00014085	419.7262752842448	77.05	0.60978	77.793	77.504	78.113	0.74293					18	11	2	0	0	0	0.64599	1	29308	29308		42.968	12.77	1	1180400		+	38636	582	28325	28557	37663	37663					0.013267456685639445
PFPHHPSER	9	Unmodified	_PFPHHPSER_					0	0	0		ENST00000586123.5_1_19:56657680-56658302:+|nuORF	ENST00000586123.5_1_19:56657680-56658302:+|nuORF	ENST00000586123.5_1_19:56657680-56658302:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	368.2852478027344	3	368.517552	1102.53083	-0.15197	-5.6004E-05	-0.57671	-0.00021253	-0.72869	-0.00026853	368.51719478014013	38.515	0.35453	39.29	39.098	39.453	0.77451					11	6	2	0	0	0	0.69507	1	14217	14217		13.615	7.423	1	669680			38637	13725	28326	28558	37664	37664					-0.016337762652028687
PFQAVDVLL	9	Unmodified	_PFQAVDVLL_					0	0	0			REV__ENST00000265192.8_1_5:138704483-138704675:+|nuORF	REV__ENST00000265192.8_1_5:138704483-138704675:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	500.6823425292969	2	501.286943	1000.55933	-0.54957	-0.00027549	1.8999	0.00095238	1.3503	0.00067688	501.28798341048173	126.4	0.25233	126.69	126.48	126.73	0.2951					7	4	2	0	0	0	0.69504	1	49410	49410		1.8442	0	1	1757400	+		38638	23246	28327	28559	37665	37665					0.059075285913763764
PFQAVDVLL	9	Unmodified	_PFQAVDVLL_					0	0	0			REV__ENST00000265192.8_1_5:138704483-138704675:+|nuORF	REV__ENST00000265192.8_1_5:138704483-138704675:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	501.286943	1000.55933	-0.11991	-6.0108E-05	2.6949	0.0013509	2.575	0.0012908	501.2878095729602	126.33	0.40403	126.33	126	126.41	0	-0.18432	0.00024818	NaN	1.8442	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3419500	+		38639	23246	28327	28559							0.059075285913763764
PFRCRFPRLLR	11	Unmodified	_PFRCRFPRLLR_					0	0	0		nc|ENSG00000129255|O75352-2|MPDU1	nc|ENSG00000129255|O75352-2|MPDU1	nc|ENSG00000129255|O75352-2|MPDU1	MSMS	A375_MHC_IP_R2	2	731.0745239257812	2	730.924615	1459.83468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.341	1	98.097	97.597	98.597	0.75586								0	0	0	0.16249	1	36947	36947		5.7319	2.4505	1				38640	14594	28328	28560	37666	37666					0.12315282238409964
PFRLRRHK	8	Unmodified	_PFRLRRHK_					0	0	0			REV__ENSG00000198173|ENST00000358047|FAM47C	REV__ENSG00000198173|ENST00000358047|FAM47C	MSMS	A375_MHC_IP_R2	2	555.7454223632812	2	555.343784	1108.67301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.975	1	18.576	18.076	19.076	0.60011								0	0	0	0.16876	1	5320	5320		0.69038	0.23204	1		+		38641	22350	28329	28561	37667	37667					0.12302481267624898
PFRQNVDY	8	Unmodified	_PFRQNVDY_					0	0	0		ENSG00000127083|ENST00000375550|OMD	ENSG00000127083|ENST00000375550|OMD	ENSG00000127083|ENST00000375550|OMD	MULTI-SECPEP	A375_MHC_IP_R2	2	519.6088256835938	2	519.753798	1037.49304	-0.84132	-0.00043728	0.48016	0.00024957	-0.36116	-0.00018771	519.7540260016292	40.763	0.50905	41.538	41.285	41.794	0.77451					16	9	3	0	0	0	0.972	1	15012	15012		7.9102	3.5809	1	1312600			38642	4076	28330	28562	37668	37668					-0.024202872506748463
PFRRHWPRQQR	11	Unmodified	_PFRRHWPRQQR_					0	0	0			REV__ENST00000262738.7_1_22:46829336-46832136:-|nuORF	REV__ENST00000262738.7_1_22:46829336-46832136:-|nuORF	MSMS	A375_MHC_IP_R1	1	782.4404296875	2	782.429442	1562.84433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.52	1	118.52	118.02	119.02	0								0	0	0	0.16307	1	43673	43673		2.7352	1.4057	1		+		38643	23212	28331	28563	37669	37669					0.08542186568138277
PFSAGKQI	8	Unmodified	_PFSAGKQI_					0	0	0		CYP2C8|p.R433Q|1|0.91|ENSG00000138115|chr10:95037303-95037303|C/T|missense_variant	CYP2C8|p.R433Q|1|0.91|ENSG00000138115|chr10:95037303-95037303|C/T|missense_variant	CYP2C8|p.R433Q|1|0.91|ENSG00000138115|chr10:95037303-95037303|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	424.63739013671875	2	424.237253	846.459953	-0.10284	-4.3629E-05	-0.3286	-0.0001394	-0.43144	-0.00018303	424.2372815850976	60.401	0.6622	60.401	60.057	60.719	0					27	12	4	0	0	0	0.8824	1	21732	21732		23.148	0	1	5605400			38644	698	28332	28564	37670	37670					0.030581306972862876
PFSAGKQI	8	Unmodified	_PFSAGKQI_					0	0	0		CYP2C8|p.R433Q|1|0.91|ENSG00000138115|chr10:95037303-95037303|C/T|missense_variant	CYP2C8|p.R433Q|1|0.91|ENSG00000138115|chr10:95037303-95037303|C/T|missense_variant	CYP2C8|p.R433Q|1|0.91|ENSG00000138115|chr10:95037303-95037303|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	424.6371154785156	2	424.237253	846.459953	-0.54632	-0.00023177	0.17274	7.3282E-05	-0.37358	-0.00015849	424.2372405730101	59.5	0.55632	60.247	59.996	60.553	0.74714					23	10	3	0	0	0	0.84748	1	22513	22513		28.487	5.3384	1	5168300			38645	698	28332	28564	37671	37671					0.030581306972862876
PFSAYTLALL	10	Unmodified	_PFSAYTLALL_					0	0	0		ENST00000531655.1_1_11:4496080-4496773:+|nuORF	ENST00000531655.1_1_11:4496080-4496773:+|nuORF	ENST00000531655.1_1_11:4496080-4496773:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	548.1546020507812	2	548.307875	1094.6012	-0.64056	-0.00035122	-1.8422	-0.0010101	-2.4828	-0.0013613	548.3062718125078	93.677	0.25404	94.422	94.312	94.566	0.74474					5	4	2	0	0	0	0.78945	1	35628	35628		13.906	3.8321	1	742580			38646	13175	28333	28565	37672	37672					0.05768084279884533
PFSDPRQFPSI	11	Unmodified	_PFSDPRQFPSI_					0	0	0		nc|ENSG00000124813|Q13950-3|RUNX2;nc|ENSG00000124813|Q13950-2|RUNX2;ENSG00000124813|ENST00000647337|RUNX2	nc|ENSG00000124813|Q13950-3|RUNX2	nc|ENSG00000124813|Q13950-3|RUNX2	MSMS	A375_MHC_IP_R2	2	430.96661376953125	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.354	1	59.103	58.603	59.603	0.74894								0	0	0	0.16258	1	22078	22078		4.4062	1.9714	1				38647	3935	28334	28566	37673	37673					0.007201845634881465
PFSRALVRLK	10	Unmodified	_PFSRALVRLK_					0	0	0			REV__ATP2B2|p.S792F|1|0.12|ENSG00000157087|chr3:10350141-10350141|G/A|missense_variant	REV__ATP2B2|p.S792F|1|0.12|ENSG00000157087|chr3:10350141-10350141|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	396.9290771484375	3	396.252147	1185.73461	-0.052815	-2.0928E-05	-0.10878	-4.3106E-05	-0.1616	-6.4033E-05	396.2521323181552	42.653	0.60857	43.425	43.116	43.724	0.7724					24	11	3	0	0	0	0.91556	1	15844	15844		1.5923	0	1	5479300	+		38648	15478	28335	28567	37674	37674					0.1491736817627043
PFSSRAAPIN	10	Unmodified	_PFSSRAAPIN_					0	0	0			REV__ENST00000339382.3_2_8:30890609-30891086:-|nuORF	REV__ENST00000339382.3_2_8:30890609-30891086:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	529.9629516601562	2	530.282723	1058.55089	-0.37272	-0.00019765	-0.21834	-0.00011578	-0.59106	-0.00031343	530.2819318506602	54.15	0.30099	54.15	53.962	54.263	0					10	5	3	0	0	0	0.60238	1	19272	19272		32.786	0	1	1209500	+		38649	23708	28336	28568	37675	37675					0.023959746747550525
PFTDGTEWP	9	Unmodified	_PFTDGTEWP_					0	0	0			REV__ENSG00000161031|ENST00000340880|PGLYRP2	REV__ENSG00000161031|ENST00000340880|PGLYRP2	MSMS	A375_MHC_IP_R1	1	525.19189453125	2	525.232364	1048.45018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.221	1	98.221	97.721	98.721	0								0	0	0	0.15486	1	36087	36087		13.508	0.97634	1		+		38650	20197	28337	28569	37676	37676					-0.07211102098744959
PFTEYEFQ	8	Unmodified	_PFTEYEFQ_					0	0	0		nc|ENSG00000081985|Q99665-2|IL12RB2;nc|ENSG00000081985|Q99665-3|IL12RB2;ENSG00000081985|ENST00000674203|IL12RB2	nc|ENSG00000081985|Q99665-2|IL12RB2	nc|ENSG00000081985|Q99665-2|IL12RB2	MULTI-MSMS	A375_MHC_IP_R1	1	531.7159423828125	2	530.73474	1059.45493	-0.58234	-0.00030907	0.063985	3.3959E-05	-0.51836	-0.00027511	530.7345961021687	100.05	0.80942	100.05	99.723	100.53	0					36	15	3	0	0	0	0.7479	1	36871	36871		20.871	8.3397	1	10384000			38651	1750	28338	28570	37677	37677					-0.07242217955990782
PFTGIVENY	9	Unmodified	_PFTGIVENY_					0	0	0		tr|U7T101|U7T101_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00756PE=4SV=1	tr|U7T101|U7T101_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00756PE=4SV=1	tr|U7T101|U7T101_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00756PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	521.72412109375	2	520.258382	1038.50221	-0.39256	-0.00020423	-0.35661	-0.00018553	-0.74917	-0.00038976	520.2582311905446	72.601	2.8375	72.601	71.968	74.805	0					223	55	7	0	0	0	0.63811	1	26797	26797		12.532	0	1	600190000			38652	29896	28339	28571	37678	37678					-0.015499386850024166
PFTIMIQKMI	10	Unmodified	_PFTIMIQKMI_					0	0	0		nc|ENSG00000165125|Q9H1D0-2|TRPV6;ENSG00000165125|ENST00000359396|TRPV6;ENSG00000127412|ENST00000265310|TRPV5	nc|ENSG00000165125|Q9H1D0-2|TRPV6	nc|ENSG00000165125|Q9H1D0-2|TRPV6	MSMS	A375_MHC_IP_R2	2	407.9480285644531	3	407.895984	1220.66612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.438	1	60.185	59.685	60.685	0.74714								0	0	0	0.15105	1	22495	22495		13.615	6.1378	1				38653	6919	28340	28572	37679	37679					0.06461619489891746
PFTPVAKQ	8	Unmodified	_PFTPVAKQ_					0	0	0		ENST00000525451.6_2_11:65622622-65622715:-|nuORF	ENST00000525451.6_2_11:65622622-65622715:-|nuORF	ENST00000525451.6_2_11:65622622-65622715:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	886.8590087890625	1	887.498529	886.491253	-0.46844	-0.00041574	-0.55657	-0.00049395	-1.025	-0.0009097	887.4979877163054	103.25	0.61091	104.01	103.68	104.3	0.76428					16	11	2	0	0	0	0.972	1	38999	38999		5.7604	0	1	5030100			38654	13071	28341	28573	37680	37680					0.043467037313689616
PFTPVAKQ	8	Unmodified	_PFTPVAKQ_					0	0	0		ENST00000525451.6_2_11:65622622-65622715:-|nuORF	ENST00000525451.6_2_11:65622622-65622715:-|nuORF	ENST00000525451.6_2_11:65622622-65622715:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	887.498529	886.491253	-0.20253	-0.00017975	0.20459	0.00018158	0.0020596	1.8279E-06	887.4985643084992	104.07	0.56014	104.07	103.83	104.39	0	0.02858	0.00040963	NaN	5.7604	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4539200			38655	13071	28341	28573							0.043467037313689616
PFTRPSLHY	9	Unmodified	_PFTRPSLHY_					0	0	0			REV__ENSG00000117036|ENST00000368192|ETV3	REV__ENSG00000117036|ENST00000368192|ETV3	MULTI-SECPEP	A375_MHC_IP_R1	1	372.8758239746094	3	373.197819	1116.57163	0.069598	2.5974E-05	-0.057268	-2.1372E-05	0.012331	4.6018E-06	373.19800518091	26.893	0.30096	26.893	26.677	26.978	0					7	5	2	0	0	0	0.77834	1	8063	8063		5.2969	4.8385	1	778870	+		38656	17989	28342	28574	37681	37681					0.018005650544182572
PFTRYSTNI	9	Unmodified	_PFTRYSTNI_					0	0	0		ENSG00000186952|ENST00000455884|TMEM232	ENSG00000186952|ENST00000455884|TMEM232	ENSG00000186952|ENST00000455884|TMEM232	MULTI-SECPEP	A375_MHC_IP_R1	1	549.9793701171875	2	549.782556	1097.55056	-0.53989	-0.00029682	1.0465	0.00057534	0.5066	0.00027852	549.7824615722158	74.888	0.60834	74.888	74.502	75.11	0					16	11	2	0	0	0	0.67483	1	27142	27142		14.838	0	1	1153900			38657	8792	28343	28575	37682	37682					0.005685549548843483
PFTYCSTEKY	10	Unmodified	_PFTYCSTEKY_					0	0	0			REV__nc|ENSG00000085982|Q9NVE5|USP40	REV__nc|ENSG00000085982|Q9NVE5|USP40	MULTI-SECPEP	A375_MHC_IP_R1	1	413.2908630371094	3	413.518118	1237.53253	0.32422	0.00013407	-0.58621	-0.00024241	-0.26199	-0.00010834	413.5178517616193	20.178	0.30415	20.178	20.03	20.334	0					14	5	3	0	0	0	0.92389	1	5175	5175		1.9064	0	1	2284100	+		38658	16847	28344	28576	37683	37683					-0.07673948082106108
PFVAAPLLF	9	Unmodified	_PFVAAPLLF_					0	0	0			REV__ENSG00000115616|ENST00000233969|SLC9A2	REV__ENSG00000115616|ENST00000233969|SLC9A2	MULTI-SECPEP	A375_MHC_IP_R2	2	487.6817932128906	2	487.789121	973.56369	-0.40131	-0.00019575	1.6725	0.00081583	1.2712	0.00062008	487.78975251219885	115.54	1.3229	116.23	115.37	116.7	0.68999					35	25	3	0	0	0	0.64653	1	43647	43647		20.871	0	1	15113000	+		38659	17900	28345	28577	37684	37684					0.0758503780493811
PFVVPHLRDVL	11	Unmodified	_PFVVPHLRDVL_					0	0	0		ENST00000412278.2_3_11:66413513-66413711:+|nuORF	ENST00000412278.2_3_11:66413513-66413711:+|nuORF	ENST00000412278.2_3_11:66413513-66413711:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	431.2880554199219	3	431.255557	1290.74484	-0.44217	-0.00019069	-1.6474	-0.00071046	-2.0896	-0.00090115	431.2537759015822	135.61	1.071	135.61	135.03	136.1	0					37	20	4	0	0	0	0.73781	1	52359	52359		1.4551	0	1	3113200			38660	11648	28346	28578	37685	37685					0.11109931110854632
PFVVPHLRDVL	11	Unmodified	_PFVVPHLRDVL_					0	0	0		ENST00000412278.2_3_11:66413513-66413711:+|nuORF	ENST00000412278.2_3_11:66413513-66413711:+|nuORF	ENST00000412278.2_3_11:66413513-66413711:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	431.255557	1290.74484	-0.094328	-4.068E-05	-1.7403	-0.00075051	-1.8346	-0.00079119	431.5880492353645	135.61	0.92093	135.75	135.15	136.07	0.13901	0.069903	-6.1604E-05	NaN	1.4551	32	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3002500			38661	11648	28346	28578							0.11109931110854632
PFWDLNKNK	9	Unmodified	_PFWDLNKNK_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	A375_MHC_IP_R1	1	581.8456420898438	2	581.306198	1160.59784	-0.41189	-0.00023943	-0.21439	-0.00012463	-0.62628	-0.00036406	581.3060525690679	84.365	0.70824	84.365	83.989	84.697	0					43	13	4	0	0	0	0.51106	1	30996	30996		19.257	0	1	26578000	+		38662	17007	28347	28579	37686	37686					0.023968342258967823
PFYFCRLLL	9	Unmodified	_PFYFCRLLL_					0	0	0		nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	MULTI-SECPEP	A375_MHC_IP_R1	1	391.9695129394531	3	391.215934	1170.62597	-0.17364	-6.793E-05	3.2834	0.0012845	3.1098	0.0012166	391.551900834179	26.702	0.25326	26.702	26.575	26.828	0					6	4	2	0	0	0	0.69504	1	8015	8015		8.1555	4.3096	1	667820			38663	8915	28348	28580	37687	37687					0.04748440881644456
PFYQLEEFNDE	11	Unmodified	_PFYQLEEFNDE_					0	0	0			REV__nc|ENSG00000104112|Q8WXD2-2|SCG3	REV__nc|ENSG00000104112|Q8WXD2-2|SCG3	MULTI-MSMS	A375_MHC_IP_R2	2	477.6064453125	3	477.541869	1429.60378	-0.87982	-0.00042015	1.565	0.00074733	0.68513	0.00032718	477.5407670069525	21.639	0.40912	22.258	22.081	22.49	0.61932					14	7	3	0	0	0	0.73809	1	6843	6843		0.40827	0	1	1273900	+		38664	17303	28349	28581	37688	37688					-0.09384156843771052
PGAAQQAL	8	Unmodified	_PGAAQQAL_					0	0	0			REV__nc|ENSG00000184368|Q96T17-5|MAP7D2	REV__nc|ENSG00000184368|Q96T17-5|MAP7D2	MULTI-SECPEP	A375_MHC_IP_R1	1	378.6068420410156	2	378.205953	754.397353	0.14545	5.501E-05	1.3998	0.00052942	1.5453	0.00058443	378.2063784524597	19.243	0.14727	19.243	19.221	19.368	0					6	4	2	0	0	0	0.93416	1	4650	4650		9.3474	0.75416	1	39679000	+		38665	21812	28350	28582	37689	37689					0.01032984629080147
PGAFLGAP	8	Unmodified	_PGAFLGAP_					0	0	0		ENST00000450390.6_1_1:1189931-1190276:-|nuORF	ENST00000450390.6_1_1:1189931-1190276:-|nuORF	ENST00000450390.6_1_1:1189931-1190276:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	364.59844970703125	2	365.200139	728.385725	0.24672	9.0101E-05	-0.066462	-2.4272E-05	0.18026	6.583E-05	365.20005836519255	33.937	0.60548	33.937	33.648	34.253	0					18	11	2	0	0	0	0.95327	1	11244	11244		11.114	4.7604	1	2578200			38666	12065	28351	28583	37690	37690					0.010667876057596004
PGAGEGAKIEV	11	Unmodified	_PGAGEGAKIEV_					0	0	0			REV__ENSG00000187605|ENST00000409262|TET3	REV__ENSG00000187605|ENST00000409262|TET3	MULTI-MSMS	A375_MHC_IP_R1	1	514.6738891601562	2	514.274564	1026.53457	-0.46395	-0.0002386	-0.22608	-0.00011627	-0.69003	-0.00035487	514.2744300057808	28.465	0.70709	28.465	28.188	28.895	0					34	13	3	0	0	0	0.00077353	1	8754	8754		106.94	3.1919	1	16825000	+		38667	22032	28352	28584	37691	37691					0.022368487179846852
PGAGEGAKIEV	11	Unmodified	_PGAGEGAKIEV_					0	0	0			REV__ENSG00000187605|ENST00000409262|TET3	REV__ENSG00000187605|ENST00000409262|TET3	MULTI-SECPEP	A375_MHC_IP_R1	1	514.6869506835938	2	514.274564	1026.53457	-0.46395	-0.0002386	-0.22608	-0.00011627	-0.69003	-0.00035487	514.2744300057808	28.465	0.70709	28.465	28.188	28.895	0					34	13	3	0	0	0	0.059683	1	8850	8850		70.332	0	1	16825000	+		38668	22032	28352	28584	37692	37692					0.022368487179846852
PGAGEGAKIEV	11	Unmodified	_PGAGEGAKIEV_					0	0	0			REV__ENSG00000187605|ENST00000409262|TET3	REV__ENSG00000187605|ENST00000409262|TET3	MULTI-SECPEP	A375_MHC_IP_R2	2	514.6868896484375	2	514.274564	1026.53457	-0.81856	-0.00042097	0.0078528	4.0385E-06	-0.81071	-0.00041693	514.2745456320625	27.831	0.86082	28.509	28.149	29.01	0.67857					42	16	4	0	0	0	0.032036	1	9598	9598		86.332	4.4416	1	15847000	+		38669	22032	28352	28584	37693	37693					0.022368487179846852
PGAGRESI	8	Unmodified	_PGAGRESI_					0	0	0			REV__ENST00000504745.1_1_4:113347516-113362363:+|nuORF	REV__ENST00000504745.1_1_4:113347516-113362363:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	787.0037231445312	1	786.410443	785.403166	-0.97854	-0.00076953	-0.54438	-0.00042811	-1.5229	-0.0011976	786.4079035498947	123.65	0.25281	123.98	123.84	124.09	0.32968					6	4	2	0	0	0	0.972	1	47597	47597		5.2307	2.9279	1	3545000	+		38670	16618	28353	28585	37694	37694					0.0018808314075613453
PGAGSQHL	8	Unmodified	_PGAGSQHL_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	A375_MHC_IP_R1	1	766.20947265625	1	766.384228	765.376952	-0.35491	-0.00027199	0.20876	0.00015999	-0.14614	-0.000112	766.3852889397552	78.276	0.30385	78.276	78.15	78.454	0					7	5	2	0	0	0	0.77686	1	28618	28618		6.3541	1.1234	1	1695500			38671	1628	28354	28586	37695	37695					-0.015121860307317547
PGALLFRL	8	Unmodified	_PGALLFRL_					0	0	0			REV__ENST00000522245.1_1_8:27311571-27312006:+|nuORF	REV__ENST00000522245.1_1_8:27311571-27312006:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	443.240966796875	2	443.779088	885.543623	-0.38801	-0.00017219	0.16318	7.2417E-05	-0.22483	-9.9775E-05	443.7790887915637	31.588	0.4599	32.325	32.095	32.555	0.73692					14	8	2	0	0	0	0.972	1	11132	11132		2.8892	0	1	3412500	+		38672	25728	28355	28587	37696	37696					0.09627286864997586
PGALQWLRRWL	11	Unmodified	_PGALQWLRRWL_					0	0	0		ENST00000341418.9_1_15:68114320-68117168:+|nuORF	ENST00000341418.9_1_15:68114320-68117168:+|nuORF	ENST00000341418.9_1_15:68114320-68117168:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	466.3379821777344	3	465.938451	1394.79352	-0.56885	-0.00026505	-0.47211	-0.00021997	-1.041	-0.00048502	465.9382318819201	93.003	0.60942	93.742	93.443	94.053	0.73901					35	11	4	0	0	0	0.72469	1	35344	35344		17.863	9.1114	1	7946900			38673	10868	28356	28588	37697	37697					0.11191844470590695
PGALRLAY	8	Unmodified	_PGALRLAY_					0	0	0		ENSG00000214279|ENST00000640237|SCART1;nc|ENSG00000214279|Q4G0T1-2|SCART1;ENST00000482993.6_3_10:135267501-135271093:+|nuORF;nc|ENSG00000214279|Q4G0T1-3|SCART1	ENSG00000214279|ENST00000640237|SCART1	ENSG00000214279|ENST00000640237|SCART1	MULTI-MSMS	A375_MHC_IP_R1	1	431.28765869140625	2	430.75307	859.491587	-0.50542	-0.00021771	-0.27636	-0.00011904	-0.78178	-0.00033676	430.752708307106	142.87	0.20303	142.87	142.74	142.94	0					5	3	2	0	0	0	0.77839	1	54805	54805		0.79363	0	1	1509700			38674	9611	28357	28589	37698	37698					0.056221234512122464
PGALRLAY	8	Unmodified	_PGALRLAY_					0	0	0		ENSG00000214279|ENST00000640237|SCART1;nc|ENSG00000214279|Q4G0T1-2|SCART1;ENST00000482993.6_3_10:135267501-135271093:+|nuORF;nc|ENSG00000214279|Q4G0T1-3|SCART1	ENSG00000214279|ENST00000640237|SCART1	ENSG00000214279|ENST00000640237|SCART1	MULTI-MATCH	A375_MHC_IP_R2	2		2	430.75307	859.491587	-0.032973	-1.4203E-05	-1.212	-0.00052207	-1.245	-0.00053627	430.75255322320106	142.88	0.25238	142.92	142.84	143.09	0.030731	0.024781	-8.113E-05	NaN	0.79363	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2096600			38675	9611	28357	28589							0.056221234512122464
PGAPLLHY	8	Unmodified	_PGAPLLHY_					0	0	0		ESPL1|p.Y2091H|1|0.28|ENSG00000135476|chr12:53293382-53293382|T/C|missense_variant	ESPL1|p.Y2091H|1|0.28|ENSG00000135476|chr12:53293382-53293382|T/C|missense_variant	ESPL1|p.Y2091H|1|0.28|ENSG00000135476|chr12:53293382-53293382|T/C|missense_variant	MSMS	A375_MHC_IP_R1	1	434.2507629394531	2	434.239796	866.465038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.508	1	31.508	31.008	32.008	0								0	0	0	0.16876	1	10092	10092		17.087	5.9721	1				38676	13961	28358	28590	37699	37699					0.02646434559892441
PGAQLLRGLL	10	Unmodified	_PGAQLLRGLL_					0	0	0		ENSG00000132837|ENST00000255189|DMGDH	ENSG00000132837|ENST00000255189|DMGDH	ENSG00000132837|ENST00000255189|DMGDH	MULTI-SECPEP	A375_MHC_IP_R1	1	518.9711303710938	2	519.326934	1036.63931	-0.75236	-0.00039072	-0.23311	-0.00012106	-0.98547	-0.00051178	519.3270293790965	36.82	0.60682	36.82	36.439	37.045	0					18	11	2	0	0	0	0.94421	1	12330	12330		0.40072	0	1	2160600			38677	4455	28359	28591	37700	37700					0.12246014985248621
PGASQASP	8	Unmodified	_PGASQASP_					0	0	0		ENSG00000111249|ENST00000261726|CUX2	ENSG00000111249|ENST00000261726|CUX2	ENSG00000111249|ENST00000261726|CUX2	MSMS	A375_MHC_IP_R2	2	357.63580322265625	2	357.674485	713.334418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.46	1	109.22	108.72	109.72	0.75436								0	0	0	0.16876	1	40954	40954		2.5775	0	1				38678	2974	28360	28592	37701	37701					-0.033715811589445366
PGATKIVP	8	Unmodified	_PGATKIVP_					0	0	0		nc|ENSG00000066827|Q9P243-3|ZFAT;nc|ENSG00000066827|Q9P243-2|ZFAT;ENSG00000066827|ENST00000377838|ZFAT	nc|ENSG00000066827|Q9P243-3|ZFAT	nc|ENSG00000066827|Q9P243-3|ZFAT	MULTI-SECPEP	A375_MHC_IP_R2	2	391.6016845703125	2	391.742171	781.469789	-0.65183	-0.00025535	0.6967	0.00027292	0.044869	1.7577E-05	391.74233914307763	53.729	0.41073	54.48	54.198	54.609	0.75105					10	7	2	0	0	0	0.972	1	20170	20170		2.5775	0	1	1409800			38679	1421	28361	28593	37702	37702					0.07031318702661338
PGCEARQLPH	10	Unmodified	_PGCEARQLPH_					0	0	0		ENST00000581241.5_1_17:80210953-80231227:-|nuORF	ENST00000581241.5_1_17:80210953-80231227:-|nuORF	ENST00000581241.5_1_17:80210953-80231227:-|nuORF	MSMS	A375_MHC_IP_R1	1	369.77288818359375	3	369.850314	1106.52911	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.732	1	17.732	17.232	18.232	0								0	0	0	0.15591	1	4176	4176		0.69767	0	1				38680	13680	28362	28594	37703	37703					-0.01989153345448358
PGCEARQLPH	10	Unmodified	_PGCEARQLPH_					0	0	0		ENST00000581241.5_1_17:80210953-80231227:-|nuORF	ENST00000581241.5_1_17:80210953-80231227:-|nuORF	ENST00000581241.5_1_17:80210953-80231227:-|nuORF	MSMS	A375_MHC_IP_R1	1	369.7001037597656	3	369.850314	1106.52911	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.864	1	18.864	18.364	19.364	0								0	0	0	0.15591	1	4527	4527		0.69767	0	1				38681	13680	28362	28594	37704	37704					-0.01989153345448358
PGCEARQLPH	10	Unmodified	_PGCEARQLPH_					0	0	0		ENST00000581241.5_1_17:80210953-80231227:-|nuORF	ENST00000581241.5_1_17:80210953-80231227:-|nuORF	ENST00000581241.5_1_17:80210953-80231227:-|nuORF	MSMS	A375_MHC_IP_R2	2	369.77288818359375	3	369.850314	1106.52911	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.047	1	18.651	18.151	19.151	0.60308								0	0	0	0.15591	1	5346	5346		0.69767	0	1				38682	13680	28362	28594	37705	37705					-0.01989153345448358
PGCGCCGPH	9	Unmodified	_PGCGCCGPH_					0	0	0			REV__NGFR|p.D249Afs*66|1|0.26|ENSG00000064300|chr17:49510589-49510593|ACAAC/-|frameshift_variant	REV__NGFR|p.D249Afs*66|1|0.26|ENSG00000064300|chr17:49510589-49510593|ACAAC/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	830.4685668945312	1	830.274225	829.266949	-0.73778	-0.00061256	-3.2447	-0.002694	-3.9825	-0.0033065	830.2685017191695	125.05	0.25314	125.38	125.2	125.45	0.32969					5	4	2	0	0	0	0.81122	1	48477	48477		0	0	1	9473500	+		38683	27600	28363	28595	37706	37706					-0.1545139395741444
PGCGPGCGD	9	Unmodified	_PGCGPGCGD_					0	0	0		ENST00000334536.12_1_16:28992906-28993772:+|nuORF	ENST00000334536.12_1_16:28992906-28993772:+|nuORF	ENST00000334536.12_1_16:28992906-28993772:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	763.050537109375	1	762.254536	761.247259	-0.78543	-0.0005987	-4.2865	-0.0032674	-5.072	-0.0038661	762.2514416730088	134.95	0.25363	135.09	135	135.25	0.13901					6	4	2	0	0	0	0.77827	1	53104	53104		0	0	1	1445600			38684	10797	28364	28596	37707	37707					-0.1429144669652942
PGDGDVPC	8	Unmodified	_PGDGDVPC_					0	0	0			REV__SH3RF1|p.S772F|1|0.16|ENSG00000154447|chr4:169107030-169107030|G/A|missense_variant	REV__SH3RF1|p.S772F|1|0.16|ENSG00000154447|chr4:169107030-169107030|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	380.11370849609375	2	380.152529	758.290504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.247	1	91.247	90.747	91.747	0								0	0	0	0.16876	1	33527	33527		5.7604	0	1		+		38685	19884	28365	28597	37708	37708					-0.09830933647594975
PGDGDVPC	8	Unmodified	_PGDGDVPC_					0	0	0			REV__SH3RF1|p.S772F|1|0.16|ENSG00000154447|chr4:169107030-169107030|G/A|missense_variant	REV__SH3RF1|p.S772F|1|0.16|ENSG00000154447|chr4:169107030-169107030|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	380.11376953125	2	380.152529	758.290504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.524	1	91.259	90.759	91.759	0.7345								0	0	0	0.16876	1	34443	34443		5.7604	0	1		+		38686	19884	28365	28597	37709	37709					-0.09830933647594975
PGDHMHPY	8	Unmodified	_PGDHMHPY_					0	0	0		nc|ENSG00000162761|Q8TE12-2|LMX1A;ENSG00000162761|ENST00000342310|LMX1A	nc|ENSG00000162761|Q8TE12-2|LMX1A	nc|ENSG00000162761|Q8TE12-2|LMX1A	MSMS	A375_MHC_IP_R2	2	477.1658630371094	2	477.200344	952.386136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.112	1	57.863	57.363	58.363	0.75015								0	0	0	0.16876	1	21593	21593		6.3541	0	1				38687	6590	28366	28598	37710	37710					-0.09196160736701131
PGEAAGSRLL	10	Unmodified	_PGEAAGSRLL_					0	0	0		ENST00000602321.5_1_16:67682228-67682996:+|nuORF	ENST00000602321.5_1_16:67682228-67682996:+|nuORF	ENST00000602321.5_1_16:67682228-67682996:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	486.16937255859375	2	485.769448	969.524344	-0.26697	-0.00012968	-0.31446	-0.00015276	-0.58143	-0.00028244	485.76932303146447	59.27	0.71243	59.27	58.836	59.548	0					29	13	3	0	0	0	0.17241	1	21291	21291		62.573	0	1	5718400			38688	13878	28367	28599	37711	37711					0.03836285783427229
PGEAAGSRLL	10	Unmodified	_PGEAAGSRLL_					0	0	0		ENST00000602321.5_1_16:67682228-67682996:+|nuORF	ENST00000602321.5_1_16:67682228-67682996:+|nuORF	ENST00000602321.5_1_16:67682228-67682996:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	486.1690368652344	2	485.769448	969.524344	-0.92145	-0.00044761	-0.27881	-0.00013544	-1.2003	-0.00058305	485.7693538117313	58.472	0.76295	59.221	58.829	59.592	0.74894					32	14	3	0	0	0	0.10503	2	22104	22104;22141		62.573	14.227	1	4731700			38689	13878	28367	28599	37712;37713	37712					0.03836285783427229
PGECPICYMS	10	Unmodified	_PGECPICYMS_					0	0	0			REV__ENSG00000140443|ENST00000650285|IGF1R	REV__ENSG00000140443|ENST00000650285|IGF1R	MSMS	A375_MHC_IP_R1	1	550.1408081054688	2	550.216488	1098.41842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.242	1	74.242	73.742	74.742	0								0	0	0	0.15365	1	27041	27041		14.838	6.9281	1		+		38690	19212	28368	28600	37714	37714					-0.12684877440233322
PGELKGRRVW	10	Unmodified	_PGELKGRRVW_					0	0	0		ENST00000274376.10_1_5:86564021-86564255:+|nuORF	ENST00000274376.10_1_5:86564021-86564255:+|nuORF	ENST00000274376.10_1_5:86564021-86564255:+|nuORF	MSMS	A375_MHC_IP_R1	1	399.9645080566406	3	399.899885	1196.67783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.605	1	25.605	25.105	26.105	0								0	0	0	0.15382	1	7499	7499		8.4443	0.96724	1				38691	10396	28369	28601	37715	37715					0.08735320619734921
PGELKGRRVW	10	Unmodified	_PGELKGRRVW_					0	0	0		ENST00000274376.10_1_5:86564021-86564255:+|nuORF	ENST00000274376.10_1_5:86564021-86564255:+|nuORF	ENST00000274376.10_1_5:86564021-86564255:+|nuORF	MSMS	A375_MHC_IP_R2	2	399.959228515625	3	399.899885	1196.67783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.757	1	25.4	24.9	25.9	0.64368								0	0	0	0.15382	1	8184	8184		8.4443	0.28878	1				38692	10396	28369	28601	37716	37716					0.08735320619734921
PGENISRASF	10	Unmodified	_PGENISRASF_					0	0	0		ENST00000409466.6_1_2:120059980-120060097:-|nuORF	ENST00000409466.6_1_2:120059980-120060097:-|nuORF	ENST00000409466.6_1_2:120059980-120060097:-|nuORF	MSMS	A375_MHC_IP_R1	1	359.8829040527344	3	359.848967	1076.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.19	1	47.19	46.69	47.69	0								0	0	0	0.15265	1	16590	16590		7.4771	0.7539	1				38693	11636	28370	28602	37717	37717					-0.010129195675290248
PGEQNGTGGY	10	Unmodified	_PGEQNGTGGY_					0	0	0		nc|ENSG00000166689|Q6IQ23|PLEKHA7;nc|ENSG00000166689|Q6IQ23-2|PLEKHA7;ENSG00000166689|ENST00000531066|PLEKHA7	nc|ENSG00000166689|Q6IQ23|PLEKHA7	nc|ENSG00000166689|Q6IQ23|PLEKHA7	MULTI-SECPEP	A375_MHC_IP_R2	2	489.6706848144531	2	490.209421	978.404288	-0.76904	-0.00037699	0.17337	8.4989E-05	-0.59567	-0.000292	490.2096119362351	35.04	0.40354	35.804	35.627	36.03	0.76338					12	7	2	0	0	0	0.93404	1	12662	12662		0.45834	0	1	1423000			38694	7102	28371	28603	37718	37718					-0.08577747280969561
PGFDAELIVKN	11	Unmodified	_PGFDAELIVKN_					0	0	0		nc|ENSG00000122642|O95302-2|FKBP9;ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000471066.1_1_7:33042511-33044960:+|nuORF;nc|ENSG00000291029|Q75LS8|FKBP9P1;ENST00000475220.1_1_7:33038205-33044960:+|nuORF;ENST00000455909.5_1_7:55750344-55756724:-|nuORF	nc|ENSG00000122642|O95302-2|FKBP9	nc|ENSG00000122642|O95302-2|FKBP9	MULTI-SECPEP	A375_MHC_IP_R2	2	401.9514465332031	3	401.552039	1201.63429	-0.3413	-0.00013705	-1.7332	-0.00069595	-2.0745	-0.000833	401.5512305959944	20.322	0.4077	20.932	20.651	21.059	0.61029					12	7	2	0	0	0	0.99252	1	6353	6353		11.631	3.686	1	1075500			38695	3795	28372	28604	37719	37719					0.041536663319675426
PGFVGKAP	8	Unmodified	_PGFVGKAP_					0	0	0		ENSG00000173065|ENST00000581407|FAM222B	ENSG00000173065|ENST00000581407|FAM222B	ENSG00000173065|ENST00000581407|FAM222B	MULTI-SECPEP	A375_MHC_IP_R2	2	387.1213073730469	2	386.721239	771.427924	-0.18737	-7.2461E-05	0.22286	8.6186E-05	0.035491	1.3725E-05	386.7211147716107	74.898	1.5248	75.636	75.365	76.89	0.73752					37	29	3	0	0	0	0.972	1	28423	28423		2.8892	0.31174	1	2774400			38696	7763	28373	28605	37720	37720					0.03306763014120406
PGGAGPGG	8	Unmodified	_PGGAGPGG_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	A375_MHC_IP_R1	1	571.168701171875	1	569.267801	568.260525	-0.14531	-8.2719E-05	1.7702	0.0010077	1.6249	0.00092499	569.2747151820713	45.784	1.0104	45.784	45.434	46.444	0					43	19	4	0	0	0	0.77839	1	16018	16018		0.79363	0	1	13984000	+		38697	20671	28374	28606	37721	37721					-0.0408750453061657
PGGCCGSC	8	Unmodified	_PGGCCGSC_					0	0	0		ENST00000592432.5_1_17:74538692-74539195:+|nuORF;ENST00000465808.7_1_17:74536626-74539195:+|nuORF;ENST00000586148.1_1_17:74538666-74539195:+|nuORF	ENST00000592432.5_1_17:74538692-74539195:+|nuORF	ENST00000592432.5_1_17:74538692-74539195:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	682.8464965820312	1	683.194578	682.187302	-0.44083	-0.00030117	-0.22247	-0.00015199	-0.6633	-0.00045316	683.1929055916028	112.44	1.2755	113.17	112.56	113.83	0.72459					31	24	2	0	0	0	0.972	1	42622	42622		0	0	1	3708500			38698	12248	28375	28607	37722	37722					-0.16650460631410624
PGGCGCGC	8	Unmodified	_PGGCGCGC_					0	0	0		ENST00000262304.8_1_16:2143686-2144130:-|nuORF	ENST00000262304.8_1_16:2143686-2144130:-|nuORF	ENST00000262304.8_1_16:2143686-2144130:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	653.0383911132812	1	653.184013	652.176737	-0.25828	-0.0001687	0.80841	0.00052804	0.55013	0.00035934	653.1855649102021	110.71	0.30743	110.71	110.49	110.8	0					8	5	2	0	0	0	0.972	1	40592	40592		0.79363	0.79363	1	1155600			38699	10297	28376	28608	37723	37723					-0.16326443285834102
PGGCGCGC	8	Unmodified	_PGGCGCGC_					0	0	0		ENST00000262304.8_1_16:2143686-2144130:-|nuORF	ENST00000262304.8_1_16:2143686-2144130:-|nuORF	ENST00000262304.8_1_16:2143686-2144130:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	652.9954833984375	1	653.184013	652.176737	-0.70634	-0.00046137	-1.435	-0.00093732	-2.1413	-0.0013987	653.1825775349083	109.37	0.30296	110.12	109.93	110.23	0.74683					6	5	2	0	0	0	0.972	1	41247	41247		0	0	1	1061000			38700	10297	28376	28608	37724	37724					-0.16326443285834102
PGGCSHIC	8	Unmodified	_PGGCSHIC_					0	0	0		ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.N3185Ifs*33|1|0.2|ENSG00000168702|chr2:140475211-140475211|A/-|frameshift_variant;LRP1B|p.G481R|1|0.39|ENSG00000168702|chr2:141055227-141055227|C/T|missense_variant;LRP1B|p.G481E|1|0.38|ENSG00000168702|chr2:141055226-141055226|C/T|missense_variant	ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	MSMS	A375_MHC_IP_R2	2	387.5325622558594	2	387.157091	772.299629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.065	1	14.638	14.138	15.138	0.573								0	0	0	0.16876	1	4274	4274		0.79363	0	1				38701	7335	28377	28609	37725	37725					-0.09562863562928214
PGGFICQKF	9	Unmodified	_PGGFICQKF_					0	0	0		ENST00000598018.1_1_19:49936751-49940072:-|nuORF;nc|ENSG00000104888|Q9P2U7-2|SLC17A7;nc|ENSG00000104888|Q9P2U7-3|SLC17A7;ENSG00000104888|ENST00000221485|SLC17A7	ENST00000598018.1_1_19:49936751-49940072:-|nuORF	ENST00000598018.1_1_19:49936751-49940072:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	498.1349182128906	2	498.752213	995.489873	-0.79206	-0.00039504	0.49307	0.00024592	-0.29899	-0.00014912	498.75232784371764	68.017	0.50519	68.017	67.754	68.26	0					12	9	2	0	0	0	0.75466	1	24570	24570		12.532	12.532	1	1101600			38702	2550	28378	28610	37726	37726					-0.008052536290279022
PGGGFGGG	8	Unmodified	_PGGGFGGG_					0	0	0		CON__Q6IFZ6	CON__Q6IFZ6	CON__Q6IFZ6	MULTI-SECPEP	A375_MHC_IP_R2	2	604.77099609375	1	605.267801	604.260525	-0.23906	-0.00014469	4.2624	0.0025799	4.0234	0.0024352	605.268152723629	142.03	1.2739	142.06	141.16	142.43	0.030731					34	24	2	0	0	0	0.972	1	55628	55628		0	0	1	1138300		+	38703	624	28379	28611	37727	37727					-0.05743504530607879
PGGGFGPV	8	Unmodified	_PGGGFGPV_					0	0	0			REV__RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant	REV__RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	687.746337890625	1	687.346052	686.338775	-0.43015	-0.00029567	0.41066	0.00028226	-0.019497	-1.3401E-05	687.3462360057322	94.808	1.7232	95.553	94.312	96.035	0.74474					48	33	2	0	0	0	0.77781	1	35915	35915		2.8892	0	1	3625800	+		38704	22822	28380	28612	37728	37728					-0.016940719453828024
PGGGFGPV	8	Unmodified	_PGGGFGPV_					0	0	0			REV__RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant	REV__RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	687.346052	686.338775	-0.68065	-0.00046784	0.97345	0.0006691	0.2928	0.00020125	687.3466185774282	95.699	1.7247	95.699	94.651	96.376	0	0.073339	0.00014661	NaN	2.8892	47	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3457500	+		38705	22822	28380	28612							-0.016940719453828024
PGGGGGKG	8	Unmodified	_PGGGGGKG_					0	0	0		ENST00000583377.1_1_17:29422248-29422371:-|nuORF	ENST00000583377.1_1_17:29422248-29422371:-|nuORF	ENST00000583377.1_1_17:29422248-29422371:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	587.224365234375	1	586.29435	585.287074	-0.22225	-0.0001303	0.83341	0.00048862	0.61116	0.00035832	586.2982998511218	98.106	1.98	98.106	97.238	99.218	0					66	38	3	0	0	0	0.77842	1	35782	35782		0.69038	0	1	2658700			38706	13695	28381	28613	37729	37729					-0.022158156392833916
PGGILLQAL	9	Unmodified	_PGGILLQAL_					0	0	0		nc|ENSG00000180694|Q6YI46-4|TMEM64;ENSG00000180694|ENST00000458549|TMEM64	nc|ENSG00000180694|Q6YI46-4|TMEM64	nc|ENSG00000180694|Q6YI46-4|TMEM64	MULTI-SECPEP	A375_MHC_IP_R2	2	441.1240234375	2	441.276378	880.538203	-0.13689	-6.0404E-05	0.25243	0.00011139	0.11554	5.0986E-05	441.2764308875666	46.999	0.50901	47.761	47.513	48.022	0.76128					14	9	2	0	0	0	0.48581	1	17685	17685		24.674	1.5255	1	1523800			38707	8309	28382	28614	37730	37730					0.09315563282518724
PGGKAKVI	8	Unmodified	_PGGKAKVI_					0	0	0		ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;nc|ENSG00000104093|Q8TDJ6-2|DMXL2;ENST00000559062.5_1_15:51750854-51750980:-|nuORF	ENSG00000104093|ENST00000560891|DMXL2	ENSG00000104093|ENST00000560891|DMXL2	MULTI-SECPEP	A375_MHC_IP_R1	1	385.6504211425781	2	385.250163	768.485774	0.60163	0.00023178	-0.020308	-7.8235E-06	0.58132	0.00022395	385.2500911990042	49.526	0.50919	49.526	49.336	49.845	0					14	9	2	0	0	0	0.972	1	17540	17540		5.2307	0	1	1683100			38708	2485	28383	28615	37731	37731					0.09227024939559669
PGGKAKVI	8	Unmodified	_PGGKAKVI_					0	0	0		ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;nc|ENSG00000104093|Q8TDJ6-2|DMXL2;ENST00000559062.5_1_15:51750854-51750980:-|nuORF	ENSG00000104093|ENST00000560891|DMXL2	ENSG00000104093|ENST00000560891|DMXL2	MULTI-SECPEP	A375_MHC_IP_R2	2	384.6119079589844	2	385.250163	768.485774	-0.12478	-4.8072E-05	0.36821	0.00014185	0.24342	9.3779E-05	385.25023469312276	48.458	0.50612	49.215	49.03	49.536	0.75737					12	9	2	0	0	0	0.972	1	18239	18239		5.2307	3.1709	1	1807900			38709	2485	28383	28615	37732	37732					0.09227024939559669
PGGWSPGC	8	Unmodified	_PGGWSPGC_					0	0	0		ENST00000395184.5_1_4:86921887-86921980:+|nuORF	ENST00000395184.5_1_4:86921887-86921980:+|nuORF	ENST00000395184.5_1_4:86921887-86921980:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	760.71923828125	1	760.308286	759.301009	-0.88071	-0.00066961	-1.2255	-0.00093173	-2.1062	-0.0016013	760.3102825421129	124.17	0.3049	124.5	124.34	124.65	0.32969					7	5	2	0	0	0	0.972	1	47942	47942		0	0	1	10630000			38710	11468	28384	28616	37733	37733					-0.08826906202500595
PGHRGSGHCEV	11	Unmodified	_PGHRGSGHCEV_					0	0	0			REV__ENST00000426714.1_1_1:66041898-66042324:-|nuORF	REV__ENST00000426714.1_1_1:66041898-66042324:-|nuORF	MSMS	A375_MHC_IP_R1	1	379.16180419921875	3	379.173568	1134.49887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.78	1	100.78	100.28	101.28	0								0	0	0	0.16297	1	37042	37042		1.3296	0.25818	1		+		38711	24655	28385	28617	37734	37734					-0.0629951201062795
PGIPTVPGV	9	Unmodified	_PGIPTVPGV_					0	0	0			REV__ENSG00000188021|ENST00000338222|UBQLN2	REV__ENSG00000188021|ENST00000338222|UBQLN2	MULTI-SECPEP	A375_MHC_IP_R1	1	419.1473083496094	2	418.747453	835.480354	0.26168	0.00010958	-0.44165	-0.00018494	-0.17998	-7.5365E-05	418.74724217655273	78.15	0.50858	78.15	77.895	78.403	0					15	9	2	0	0	0	0.3243	1	28559	28559		36.044	0	1	1863000	+		38712	22066	28386	28618	37735	37735					0.056033013570868206
PGIPTVPGV	9	Unmodified	_PGIPTVPGV_					0	0	0			REV__ENSG00000188021|ENST00000338222|UBQLN2	REV__ENSG00000188021|ENST00000338222|UBQLN2	MULTI-MSMS	A375_MHC_IP_R2	2	419.1473388671875	2	418.747453	835.480354	-0.074736	-3.1296E-05	-0.16515	-6.9157E-05	-0.23989	-0.00010045	418.7473955252317	77.329	0.66058	78.072	77.807	78.468	0.74293					19	12	2	0	0	0	0.083809	1	29407	29407		53.576	2.7205	1	1312800	+		38713	22066	28386	28618	37736	37736					0.056033013570868206
PGIPTVPGV	9	Unmodified	_PGIPTVPGV_					0	0	0			REV__ENSG00000188021|ENST00000338222|UBQLN2	REV__ENSG00000188021|ENST00000338222|UBQLN2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	418.747453	835.480354	-0.074736	-3.1296E-05	-0.16515	-6.9157E-05	-0.23989	-0.00010045	418.7473955252317	77.329	0.66058	78.072	77.807	78.468	0.74293	-0.039154	0.00013512	NaN	53.576	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1312800	+		38714	22066	28386	28618							0.056033013570868206
PGKAGHGR	8	Unmodified	_PGKAGHGR_					0	0	0		ENST00000576083.5_1_17:5973812-5983707:+|nuORF	ENST00000576083.5_1_17:5973812-5983707:+|nuORF	ENST00000576083.5_1_17:5973812-5983707:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	390.6175842285156	2	390.217186	778.419819	0.0011632	4.5388E-07	0.4644	0.00018122	0.46556	0.00018167	390.2172860731887	100.26	2.4467	101.02	100.52	102.97	0.76278					87	47	2	0	0	0	0.77797	1	37872	37872		2.3027	0	1	5243600			38715	13639	28387	28619	37737	37737					0.021746288173744688
PGKAPVVL	8	Unmodified	_PGKAPVVL_					0	0	0		ENST00000263805.8_1_15:42707651-42707795:-|nuORF	ENST00000263805.8_1_15:42707651-42707795:-|nuORF	ENST00000263805.8_1_15:42707651-42707795:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	390.6485595703125	2	390.752539	779.490525	-0.072997	-2.8524E-05	0.11626	4.5427E-05	0.043259	1.6903E-05	390.7525763735657	87.359	0.65729	88.092	87.812	88.469	0.733					22	12	2	0	0	0	0.77488	1	33182	33182		13.508	4.1604	1	6818100			38716	10324	28388	28620	37738	37738					0.09195909082336584
PGKCIKKPV	9	Unmodified	_PGKCIKKPV_					0	0	0			REV__ENST00000473195.5_1_3:49866538-49882012:-|nuORF	REV__ENST00000473195.5_1_3:49866538-49882012:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	970.460693359375	1	969.591384	968.584108	-0.27889	-0.00027041	-4.2554	-0.004126	-4.5343	-0.0043964	969.5882303890328	124.32	0.25248	124.32	124.19	124.44	0					5	4	2	0	0	0	0.6898	1	46724	46724		7.9102	0.62092	1	13288000	+		38717	21777	28389	28621	37739	37739					0.09855885193098857
PGKEIPKGIDK	11	Unmodified	_PGKEIPKGIDK_					0	0	0			REV__ENST00000371649.5_1_9:139756738-139756852:-|nuORF	REV__ENST00000371649.5_1_9:139756738-139756852:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	591.7477416992188	2	591.348063	1180.68157	-0.69157	-0.00040896	0.33538	0.00019833	-0.3562	-0.00021064	591.3481193593401	142.93	0.85835	142.93	142.38	143.24	0					57	16	5	0	0	0	0.73679	1	54745	54745		2.7352	1.0826	1	16386000	+		38718	17477	28390	28622	37740	37740					0.0984594560293317
PGKEKRPQ	8	Unmodified	_PGKEKRPQ_					0	0	0			REV__CSAG1|p.R63K|1|0.73|ENSG00000198930|chrX:152727843-152727843|C/T|missense_variant	REV__CSAG1|p.R63K|1|0.73|ENSG00000198930|chrX:152727843-152727843|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	470.6714782714844	2	470.272158	938.529764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.58	1	125.87	125.37	126.37	0.2951								0	0	0	0.16876	1	49019	49019		5.2307	0.47466	1		+		38719	15920	28391	28623	37741	37741					0.058040093658974
PGKGRWVP	8	Unmodified	_PGKGRWVP_					0	0	0			REV__ENST00000595881.1_1_19:50017122-50017545:+|nuORF	REV__ENST00000595881.1_1_19:50017122-50017545:+|nuORF	MSMS	A375_MHC_IP_R2	2	448.65814208984375	2	448.758687	895.502821	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.34	1	127.61	127.11	128.11	0.26593								0	0	0	0.16876	1	49931	49931		2.3027	0	1		+		38720	26468	28392	28624	37742	37742					0.05088945545367096
PGKHSNKK	8	Unmodified	_PGKHSNKK_					0	0	0		ENSG00000121898|ENST00000241305|CPXM2	ENSG00000121898|ENST00000241305|CPXM2	ENSG00000121898|ENST00000241305|CPXM2	MULTI-MSMS	A375_MHC_IP_R2	2	448.6589050292969	2	448.259051	894.503549	-0.38316	-0.00017175	-0.12058	-5.4052E-05	-0.50374	-0.00022581	448.2589033521392	128.91	1.7238	129.15	128.35	130.07	0.23946					53	33	2	0	0	0	0.77804	1	50587	50587		2.0598	0	1	13639000			38721	3746	28393	28625	37743	37743					0.05207740194418875
PGKKHRYMRLL	11	Unmodified	_PGKKHRYMRLL_					0	0	0		SLCO6A1|p.L51M|1|0.34|ENSG00000205359|chr5:102498694-102498694|G/T|missense_variant	SLCO6A1|p.L51M|1|0.34|ENSG00000205359|chr5:102498694-102498694|G/T|missense_variant	SLCO6A1|p.L51M|1|0.34|ENSG00000205359|chr5:102498694-102498694|G/T|missense_variant	MSMS	A375_MHC_IP_R1	1	467.00732421875	3	466.943208	1397.80779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.07	1	146.07	145.57	146.57	0								0	0	0	0.16354	1	55902	55902		0.08335	0	1				38722	29202	28394	28626	37744	37744					0.12480173627227487
PGKKHRYMRLL	11	Unmodified	_PGKKHRYMRLL_					0	0	0		SLCO6A1|p.L51M|1|0.34|ENSG00000205359|chr5:102498694-102498694|G/T|missense_variant	SLCO6A1|p.L51M|1|0.34|ENSG00000205359|chr5:102498694-102498694|G/T|missense_variant	SLCO6A1|p.L51M|1|0.34|ENSG00000205359|chr5:102498694-102498694|G/T|missense_variant	MSMS	A375_MHC_IP_R2	2	467.0079650878906	3	466.943208	1397.80779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.33	1	143.35	142.85	143.85	0.024414								0	0	0	0.16337	1	56017	56017		0.40827	0	1				38723	29202	28394	28626	37745	37745					0.12480173627227487
PGKNQRAV	8	Unmodified	_PGKNQRAV_					0	0	0		nc|ENSG00000119411|Q5W0U4-2|BSPRY;ENST00000462085.1_1_9:116111859-116131917:+|nuORF;ENSG00000119411|ENST00000374183|BSPRY	nc|ENSG00000119411|Q5W0U4-2|BSPRY	nc|ENSG00000119411|Q5W0U4-2|BSPRY	MULTI-MSMS	A375_MHC_IP_R2	2	435.2820129394531	2	435.251226	868.487899	-0.12885	-5.6081E-05	0.054031	2.3517E-05	-0.074816	-3.2564E-05	435.2511548815594	99.112	5.1421	99.871	97.877	103.02	0.75977					173	100	3	0	0	0	0.77702	1	38283	38283		5.7604	0.52976	1	4933900			38724	3592	28395	28627	37746	37746					0.048394536773685104
PGKNQRAV	8	Unmodified	_PGKNQRAV_					0	0	0		nc|ENSG00000119411|Q5W0U4-2|BSPRY;ENST00000462085.1_1_9:116111859-116131917:+|nuORF;ENSG00000119411|ENST00000374183|BSPRY	nc|ENSG00000119411|Q5W0U4-2|BSPRY	nc|ENSG00000119411|Q5W0U4-2|BSPRY	MULTI-SECPEP	A375_MHC_IP_R2	2	435.6506042480469	2	435.251226	868.487899	-0.32192	-0.00014011	-0.18541	-8.0698E-05	-0.50732	-0.00022081	435.2510131057575	129.1	0.75864	129.34	129.06	129.82	0.23946					33	14	4	0	0	0	0.972	1	50713	50713		2.3027	0	1	31426000			38725	3592	28395	28627	37747	37747					0.048394536773685104
PGKQGFKPKRP	11	Unmodified	_PGKQGFKPKRP_					0	0	0		ZNF341|p.G275R|1|0.36|ENSG00000131061|chr20:33757229-33757229|G/A|missense_variant	ZNF341|p.G275R|1|0.36|ENSG00000131061|chr20:33757229-33757229|G/A|missense_variant	ZNF341|p.G275R|1|0.36|ENSG00000131061|chr20:33757229-33757229|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	413.9819641113281	3	413.915535	1238.72478	0.011892	4.9223E-06	1.3337	0.00055202	1.3455	0.00055694	413.91627768776203	130.67	0.71146	130.88	130.81	131.52	0.2142					16	13	2	0	0	0	0.73807	1	51647	51647		1.2148	0.51716	1	2958500			38726	30213	28396	28628	37748	37748					0.11496180170888692
PGKREKDK	8	Unmodified	_PGKREKDK_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	A375_MHC_IP_R1	1	479.67730712890625	2	479.277441	956.540328	-0.2405	-0.00011527	0.24507	0.00011745	0.0045651	2.188E-06	479.2774316255571	109.94	4.5331	109.94	108.36	112.89	0					246	88	4	0	0	0	0.77804	1	39829	39829		2.0598	0.21551	1	18064000			38727	3298	28397	28629	37749	37749					0.06031992020314192
PGKRLKHQGI	10	Unmodified	_PGKRLKHQGI_					0	0	0		VPS26A|p.E64K|1|0.49|ENSG00000122958|chr10:69155848-69155848|G/A|missense_variant	VPS26A|p.E64K|1|0.49|ENSG00000122958|chr10:69155848-69155848|G/A|missense_variant	VPS26A|p.E64K|1|0.49|ENSG00000122958|chr10:69155848-69155848|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	567.747802734375	2	567.348732	1132.68291	-0.68442	-0.0003883	-0.71726	-0.00040694	-1.4017	-0.00079524	567.3482021578848	138.38	1.162	138.38	138.2	139.37	0					57	22	5	0	0	0	0.72574	1	53217	53217		0	0	1	13348000			38728	30149	28398	28630	37750	37750					0.1218762448236248
PGKRLKHQGI	10	Unmodified	_PGKRLKHQGI_					0	0	0		VPS26A|p.E64K|1|0.49|ENSG00000122958|chr10:69155848-69155848|G/A|missense_variant	VPS26A|p.E64K|1|0.49|ENSG00000122958|chr10:69155848-69155848|G/A|missense_variant	VPS26A|p.E64K|1|0.49|ENSG00000122958|chr10:69155848-69155848|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	567.348732	1132.68291	-0.18494	-0.00010493	-1.1184	-0.00063453	-1.3033	-0.00073945	567.347980858081	138.36	1.1581	138.44	138.27	139.42	0.083969	0.028519	-0.00018157	NaN	0	42	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12026000			38729	30149	28398	28630							0.1218762448236248
PGKRQQVG	8	Unmodified	_PGKRQQVG_					0	0	0		ENST00000459775.5_1_2:85830068-85850777:+|nuORF;ENST00000491659.5_1_2:85830068-85848354:+|nuORF	ENST00000459775.5_1_2:85830068-85850777:+|nuORF	ENST00000459775.5_1_2:85830068-85850777:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	435.2826843261719	2	435.251226	868.487899	-0.16108	-7.0109E-05	0.021941	9.55E-06	-0.13914	-6.0559E-05	435.2511357797836	99.557	2.8896	99.557	98.352	101.24	0					89	56	2	0	0	0	0.77717	1	36883	36883		5.2307	0	1	5199800			38730	12156	28399	28631	37751	37751					0.04839453677379879
PGKSTKKKKK	10	Unmodified	_PGKSTKKKKK_					0	0	0			REV__CDCP1|p.N699S|1|0.36|ENSG00000163814|chr3:45086053-45086053|T/C|missense_variant	REV__CDCP1|p.N699S|1|0.36|ENSG00000163814|chr3:45086053-45086053|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	565.7740478515625	2	565.374415	1128.73428	-0.75284	-0.00042564	0.048626	2.7492E-05	-0.70422	-0.00039815	565.3743489590589	149.66	1.3974	149.66	148.61	150	0					143	50	3	0	0	0	0.72658	1	57128	57128		0.40072	0.40072	1	467580	+		38731	15619	28400	28632	37752	37752					0.17505948456391707
PGLCKLPQ	8	Unmodified	_PGLCKLPQ_					0	0	0		ENST00000377658.8_1_1:6651717-6651999:-|nuORF	ENST00000377658.8_1_1:6651717-6651999:-|nuORF	ENST00000377658.8_1_1:6651717-6651999:-|nuORF	MSMS	A375_MHC_IP_R1	1	428.2872314453125	2	428.241481	854.468409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.534	1	32.534	32.034	33.034	0								0	0	0	0.16876	1	10520	10520		12.532	3.1841	1				38732	11299	28401	28633	37753	37753					0.03535361342244414
PGLHLVSGTPL	11	Unmodified	_PGLHLVSGTPL_					0	0	0			REV__ENST00000512792.2_1_12:112194042-112194222:+|nuORF	REV__ENST00000512792.2_1_12:112194042-112194222:+|nuORF	MSMS	A375_MHC_IP_R2	2	545.715087890625	2	545.816399	1089.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.63	1	131.82	131.32	132.32	0.18953								0	0	0	0.1624	1	51779	51779		6.2058	0	1		+		38733	25631	28402	28634	37754	37754					0.07702004885709357
PGLIEGNEYRF	11	Unmodified	_PGLIEGNEYRF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R1	1	432.2749328613281	3	432.21906	1293.63535	-0.056658	-2.4489E-05	-0.031834	-1.3759E-05	-0.088493	-3.8248E-05	432.21894000793895	40.484	0.35597	40.484	40.304	40.66	0					10	6	2	0	0	0	0.73078	1	13948	13948		4.1166	0	1	1252100			38734	6151;14694	28403	28635	37755	37755					0.00027880700827154214
PGLKAQLSP	9	Unmodified	_PGLKAQLSP_					0	0	0			REV__nc|ENSG00000074219|Q15562-3|TEAD2	REV__nc|ENSG00000074219|Q15562-3|TEAD2	MULTI-MSMS	A375_MHC_IP_R1	1	912.88232421875	1	910.535643	909.528367	-0.13586	-0.00012371	-0.1623	-0.00014778	-0.29816	-0.00027149	910.5355430871386	99.293	0.65926	99.293	98.964	99.624	0					34	12	4	0	0	0	0.41409	1	36432	36432		24.021	4.5816	1	29572000	+		38735	16632	28404	28636	37756	37756					0.06998375277123614
PGLKGVTFLV	10	Unmodified	_PGLKGVTFLV_					0	0	0			REV__ENST00000392900.3_1_7:143551228-143582358:-|nuORF	REV__ENST00000392900.3_1_7:143551228-143582358:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	515.6749877929688	2	515.81841	1029.62227	-0.68742	-0.00035458	-1.0329	-0.00053278	-1.7203	-0.00088736	515.818132053679	92.612	0.45743	93.351	93.038	93.495	0.73901					15	8	2	0	0	0	0.9269	1	35140	35140		6.7232	0	1	1130300	+		38736	22370	28405	28637	37757	37757					0.10864094379394373
PGLLRLLLL	9	Unmodified	_PGLLRLLLL_					0	0	0			REV__ENSG00000139540|ENST00000454355|SLC39A5	REV__ENSG00000139540|ENST00000454355|SLC39A5	MULTI-MSMS	A375_MHC_IP_R2	2	504.7516174316406	2	504.35242	1006.69029	-0.73774	-0.00037208	-0.57473	-0.00028987	-1.3125	-0.00066195	504.35215215622515	128.74	0.20084	128.98	128.86	129.06	0.23946					5	3	2	0	0	0	0.65721	1	50608	50608		10.824	0	1	5345100	+		38737	19162	28406	28638	37758	37758					0.18720964030080722
PGLLRLLLL	9	Unmodified	_PGLLRLLLL_					0	0	0			REV__ENSG00000139540|ENST00000454355|SLC39A5	REV__ENSG00000139540|ENST00000454355|SLC39A5	MULTI-MATCH	A375_MHC_IP_R1	1		2	504.35242	1006.69029	-0.42897	-0.00021635	1.0086	0.00050867	0.5796	0.00029232	504.35293692383243	129.02	0.20502	129.02	128.89	129.09	0	0.015959	0.0010195	NaN	10.824	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5695300	+		38738	19162	28406	28638							0.18720964030080722
PGLLRLLLL	9	Unmodified	_PGLLRLLLL_					0	0	0			REV__ENSG00000139540|ENST00000454355|SLC39A5	REV__ENSG00000139540|ENST00000454355|SLC39A5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	504.35242	1006.69029	-0.73774	-0.00037208	-0.57473	-0.00028987	-1.3125	-0.00066195	504.35215215622515	128.74	0.20084	128.98	128.86	129.06	0.23946	-0.015959	-0.00057762	NaN	10.824	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5345100	+		38739	19162	28406	28638							0.18720964030080722
PGLNVHFAV	9	Unmodified	_PGLNVHFAV_					0	0	0		ENST00000600228.5_1_19:52643056-52643152:-|nuORF	ENST00000600228.5_1_19:52643056-52643152:-|nuORF	ENST00000600228.5_1_19:52643056-52643152:-|nuORF	MSMS	A375_MHC_IP_R1	1	477.27191162109375	2	477.263802	952.513051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.075	1	89.075	88.575	89.575	0								0	0	0	0.15486	1	32718	32718		5.2307	0	1				38740	13866	28407	28639	37759	37759					0.0348950847994729
PGLPPGWAL	9	Unmodified	_PGLPPGWAL_					0	0	0		nc|ENSG00000213889|Q8N819-2|PPM1N;ENSG00000213889|ENST00000451287|PPM1N	nc|ENSG00000213889|Q8N819-2|PPM1N	nc|ENSG00000213889|Q8N819-2|PPM1N	MSMS	A375_MHC_IP_R2	2	454.16888427734375	2	454.255446	906.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.19	1	93.929	93.429	94.429	0.73902								0	0	0	0.15427	1	35431	35431		14.582	0	1				38741	9585	28408	28640	37760	37760					0.03935007593975115
PGLQAYHEI	9	Unmodified	_PGLQAYHEI_					0	0	0			REV__ENSG00000185129|ENST00000331327|PURA	REV__ENSG00000185129|ENST00000331327|PURA	MULTI-SECPEP	A375_MHC_IP_R1	1	514.6871337890625	2	514.263999	1026.51345	-0.49104	-0.00025252	-0.32772	-0.00016854	-0.81876	-0.00042106	514.263881364084	59.506	0.81241	59.506	59.245	60.057	0					22	15	2	0	0	0	0.60012	1	21610	21610		24.674	15.291	1	7210400	+		38742	21872	28409	28641	37761	37761					0.0012488340912568674
PGLYLVVLIV	10	Unmodified	_PGLYLVVLIV_					0	0	0			REV__ENST00000196489.3_1_19:58090211-58090256:-|nuORF	REV__ENST00000196489.3_1_19:58090211-58090256:-|nuORF	MSMS	A375_MHC_IP_R1	1	362.5976257324219	3	362.570483	1084.68962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.106	1	53.106	52.606	53.606	0								0	0	0	0.15577	1	18920	18920		2.086	0	1		+		38743	23021	28410	28642	37762	37762					0.1506612459036205
PGMGVGVP	8	Unmodified	_PGMGVGVP_					0	0	0		ENST00000279227.9_2_11:63990950-63991277:+|nuORF	ENST00000279227.9_2_11:63990950-63991277:+|nuORF	ENST00000279227.9_2_11:63990950-63991277:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	356.5975646972656	2	357.186174	712.357796	-0.59397	-0.00021216	2.1899	0.00078221	1.5959	0.00057005	357.1885852108601	26.492	0.25436	27.152	26.957	27.212	0.65992					6	4	2	0	0	0	0.972	1	8983	8983		2.8892	0	1	982760			38744	10415	28411	28643	37763	37763					-0.00988858645973778
PGMKRIGA	8	Unmodified	_PGMKRIGA_					0	0	0		TTC21B|p.S601F|1|0.18|ENSG00000123607|chr2:165917354-165917354|G/A|missense_variant;TTC21B|p.Y1260Ifs*9|1|0.17|ENSG00000123607|chr2:165880706-165880706|A/-|frameshift_variant;ENSG00000123607|ENST00000243344|TTC21B	TTC21B|p.S601F|1|0.18|ENSG00000123607|chr2:165917354-165917354|G/A|missense_variant	TTC21B|p.S601F|1|0.18|ENSG00000123607|chr2:165917354-165917354|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	415.1382751464844	2	415.239273	828.463992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.23	1	80.974	80.474	81.474	0.74474								0	0	0	0.16876	1	30458	30458		9.3474	0.75416	1				38745	3855	28412	28644	37764	37764					0.04289896919351577
PGMKVLLMD	9	Unmodified	_PGMKVLLMD_					0	0	0		ENSG00000136631|ENST00000644510|VPS45;ENST00000460366.5_1_1:150039914-150049098:+|nuORF;ENST00000497638.2_1_1:150039914-150048408:+|nuORF	ENSG00000136631|ENST00000644510|VPS45	ENSG00000136631|ENST00000644510|VPS45	MULTI-SECPEP	A375_MHC_IP_R1	1	502.69500732421875	2	502.269381	1002.52421	-0.5435	-0.00027298	-0.34119	-0.00017137	-0.88469	-0.00044435	502.26892852732567	80.617	0.40458	80.617	80.34	80.744	0					14	7	2	0	0	0	0.74412	1	29492	29492		14.838	0.93222	1	2380000			38746	4803	28413	28645	37765	37765					0.023048264675708197
PGMLAPRL	8	Unmodified	_PGMLAPRL_					0	0	0			REV__ENST00000465079.1_1_1:155948753-155948843:-|nuORF	REV__ENST00000465079.1_1_1:155948753-155948843:-|nuORF	MSMS	A375_MHC_IP_R1	1	427.64813232421875	2	427.749473	853.484393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.705	1	32.705	32.205	33.205	0								0	0	0	0.16876	1	10592	10592		6.3541	0	1		+		38747	25020	28414	28646	37766	37766					0.05179067579160801
PGPAPEWPG	9	Unmodified	_PGPAPEWPG_					0	0	0		ENSG00000112541|ENST00000539869|PDE10A	ENSG00000112541|ENST00000539869|PDE10A	ENSG00000112541|ENST00000539869|PDE10A	MSMS	A375_MHC_IP_R1	1	454.18609619140625	2	454.21906	906.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.428	1	94.428	93.928	94.928	0								0	0	0	0.15131	1	34707	34707		19.439	2.4967	1				38748	3093	28415	28647	37767	37767					-0.03338746199426623
PGPGGSVDIVA	11	Unmodified	_PGPGGSVDIVA_					0	0	0		ENST00000592375.6_1_19:11488662-11489328:-|nuORF;ENSG00000187266|ENST00000222139|EPOR	ENST00000592375.6_1_19:11488662-11489328:-|nuORF	ENST00000592375.6_1_19:11488662-11489328:-|nuORF	MSMS	A375_MHC_IP_R2	2	484.65484619140625	2	484.756007	967.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.242	1	20.852	20.352	21.352	0.61029								0	0	0	0.16249	1	6285	6285		5.7319	0.50118	1				38749	8819	28416	28648	37768	37768					0.01241177172244079
PGPLSKQGS	9	Unmodified	_PGPLSKQGS_					0	0	0		nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF	nc|ENSG00000130726|Q13263-2|TRIM28	nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-MSMS	A375_MHC_IP_R1	1	436.13763427734375	2	435.737617	869.460681	-0.12849	-5.5989E-05	-0.095994	-4.1828E-05	-0.22449	-9.7817E-05	435.7375396975945	34.835	0.81289	34.835	34.608	35.421	0					36	15	3	0	0	0	0.11629	1	11498	11498		47.749	3.8904	1	89063000			38750	4272	28417	28649	37769	37769					0.02072925346340071
PGPPEPEE	8	Unmodified	_PGPPEPEE_					0	0	0		ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2;nc|ENSG00000165238|Q9Y3S1-3|WNK2	ENSG00000165238|ENST00000427277|WNK2	ENSG00000165238|ENST00000427277|WNK2	MSMS	A375_MHC_IP_R2	2	426.14263916015625	2	426.192708	850.370863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.764	1	37.535	37.035	38.035	0.7709								0	0	0	0.16876	1	13421	13421		11.114	0	1				38751	6929	28418	28650	37770	37770					-0.06030749052899864
PGPPPPPPP	9	Unmodified	_PGPPPPPPP_					0	0	0		ENST00000375142.5_2_1:19811931-19811970:-|nuORF;ENST00000584336.1_1_17:37686825-37687566:+|nuORF;CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;ENSG00000182742|ENST00000332503|HOXB4;nc|ENSG00000124920|Q9Y2G1-2|MYRF;ENSG00000124920|ENST00000278836|MYRF;ENSG00000099822|ENST00000251287|HCN2;ENSG00000125966|ENST00000246186|MMP24;nc|ENSG00000134775|Q2V2M9-2|FHOD3;nc|ENSG00000134775|Q2V2M9|FHOD3;nc|ENSG00000134775|Q2V2M9-3|FHOD3;ENSG00000134775|ENST00000590592|FHOD3;ENSG00000136928|ENST00000259455|GABBR2;ENSG00000164916|ENST00000328914|FOXK1	REV__ENSG00000106299|ENST00000223023|WASL;REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E;CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant;ENSG00000182742|ENST00000332503|HOXB4;nc|ENSG00000124920|Q9Y2G1-2|MYRF;REV__ENSG00000197386|ENST00000355072|HTT;REV__nc|ENSG00000147133|P21675-25|TAF1;ENSG00000099822|ENST00000251287|HCN2;ENSG00000125966|ENST00000246186|MMP24;nc|ENSG00000134775|Q2V2M9-2|FHOD3;ENSG00000136928|ENST00000259455|GABBR2;ENSG00000164916|ENST00000328914|FOXK1;REV__nc|ENSG00000041515|Q9Y6X6|MYO16;REV__ENSG00000103067|ENST00000473183|ESRP2	REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E	MSMS	A375_MHC_IP_R1	1	426.6586608886719	2	426.734346	851.454139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.365	1	37.365	36.865	37.865	0								0	0	0	0.026298	1	12591	12591		79.935	0	1				38752	16123;351;22284;6892;17439;3938;19572;8431;2088;4013;4607;4840;16342;17251	28419	28651	37771	37771					0.022470321856076225
PGPRRPRRPRR	11	Unmodified	_PGPRRPRRPRR_					0	0	0			REV__ENSG00000116014|ENST00000234371|KISS1R	REV__ENSG00000116014|ENST00000234371|KISS1R	MULTI-MSMS	A375_MHC_IP_R1	1	468.0238037109375	3	467.62386	1399.84975	-0.60745	-0.00028406	0.29464	0.00013778	-0.31281	-0.00014628	467.6238872490725	137.57	1.9346	137.57	137.28	139.22	0					80	37	4	0	0	0	0.73795	1	52941	52941		1.3296	0	1	18433000	+		38753	17931	28420	28652	37772	37772					0.16581910150625845
PGPSLAGK	8	Unmodified	_PGPSLAGK_					0	0	0		ENSG00000260220|ENST00000638797|CCDC187	ENSG00000260220|ENST00000638797|CCDC187	ENSG00000260220|ENST00000638797|CCDC187	MULTI-MSMS	A375_MHC_IP_R1	1	728.4853515625	1	726.414465	725.407189	-0.79497	-0.00057747	0.21885	0.00015898	-0.57611	-0.0004185	726.414572531251	36.776	0.81135	36.776	36.489	37.301	0					34	15	3	0	0	0	0.77797	1	12275	12275		2.3027	0	1	33936000			38754	9928	28421	28653	37773	37773					0.033501726344866256
PGPSLAGK	8	Unmodified	_PGPSLAGK_					0	0	0		ENSG00000260220|ENST00000638797|CCDC187	ENSG00000260220|ENST00000638797|CCDC187	ENSG00000260220|ENST00000638797|CCDC187	MULTI-MATCH	A375_MHC_IP_R2	2		1	726.414465	725.407189	-0.92058	-0.00066873	0.28449	0.00020666	-0.63609	-0.00046207	726.4145984140571	36.056	0.76421	36.82	36.588	37.352	0.7638	0.021854	2.2122E-05	NaN	2.3027	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38492000			38755	9928	28421	28653							0.033501726344866256
PGPTPSGTNVG	11	Unmodified	_PGPTPSGTNVG_					0	0	0		ENSG00000106803|ENST00000223641|SEC61B;ENST00000481573.1_1_9:101984645-101984926:+|nuORF	ENSG00000106803|ENST00000223641|SEC61B	ENSG00000106803|ENST00000223641|SEC61B	MULTI-SECPEP	A375_MHC_IP_R1	1	492.60693359375	2	492.243264	982.471974	-0.39024	-0.00019209	-0.046212	-2.2747E-05	-0.43645	-0.00021484	492.2432267138011	28.224	0.75824	28.224	28.037	28.795	0					30	14	3	0	0	0	0.039643	1	8718	8718		89.401	58.132	1	9636800			38756	2714	28422	28654	37774	37774					-0.019962973501719716
PGPTPSGTNVG	11	Unmodified	_PGPTPSGTNVG_					0	0	0		ENSG00000106803|ENST00000223641|SEC61B;ENST00000481573.1_1_9:101984645-101984926:+|nuORF	ENSG00000106803|ENST00000223641|SEC61B	ENSG00000106803|ENST00000223641|SEC61B	MULTI-SECPEP	A375_MHC_IP_R2	2	492.60693359375	2	492.243264	982.471974	-0.53115	-0.00026145	-0.47726	-0.00023493	-1.0084	-0.00049638	492.24319823944427	27.738	0.70903	28.417	28.2	28.909	0.67857					31	13	3	0	0	0	0.041279	1	9485	9485		89.401	58.132	1	10376000			38757	2714	28422	28654	37775	37775					-0.019962973501719716
PGQKSTADPL	10	Unmodified	_PGQKSTADPL_					0	0	0		GCKR|p.R612S|1|0.3|ENSG00000084734|chr2:27523395-27523395|C/A|missense_variant	GCKR|p.R612S|1|0.3|ENSG00000084734|chr2:27523395-27523395|C/A|missense_variant	GCKR|p.R612S|1|0.3|ENSG00000084734|chr2:27523395-27523395|C/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	507.6666564941406	2	507.266739	1012.51892	-0.22207	-0.00011265	-0.33555	-0.00017022	-0.55762	-0.00028286	507.2665909853148	20.849	0.66313	20.849	20.485	21.148	0					18	12	2	0	0	0	0.44858	1	5401	5401		31.268	0	1	2341600			38758	14038	28423	28655	37776	37776					0.013165622009296385
PGQKSTADPL	10	Unmodified	_PGQKSTADPL_					0	0	0		GCKR|p.R612S|1|0.3|ENSG00000084734|chr2:27523395-27523395|C/A|missense_variant	GCKR|p.R612S|1|0.3|ENSG00000084734|chr2:27523395-27523395|C/A|missense_variant	GCKR|p.R612S|1|0.3|ENSG00000084734|chr2:27523395-27523395|C/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	507.6661071777344	2	507.266739	1012.51892	-1.0276	-0.00052129	0.086685	4.3972E-05	-0.94095	-0.00047732	507.26670072113626	19.438	0.40707	20.041	19.833	20.241	0.60308					16	7	3	0	0	0	0.38709	1	5987	5987		34.932	3.6637	1	2461000			38759	14038	28423	28655	37777	37777					0.013165622009296385
PGQKSTADPL	10	Unmodified	_PGQKSTADPL_					0	0	0		GCKR|p.R612S|1|0.3|ENSG00000084734|chr2:27523395-27523395|C/A|missense_variant	GCKR|p.R612S|1|0.3|ENSG00000084734|chr2:27523395-27523395|C/A|missense_variant	GCKR|p.R612S|1|0.3|ENSG00000084734|chr2:27523395-27523395|C/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	507.266739	1012.51892	-0.22207	-0.00011265	-0.33555	-0.00017022	-0.55762	-0.00028286	507.2665909853148	20.849	0.66313	20.849	20.485	21.148	0	0	0	NaN	31.268	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2341600			38760	14038	28423	28655							0.013165622009296385
PGQTLPPVLY	10	Unmodified	_PGQTLPPVLY_					0	0	0		ENST00000275517.7_2_11:64846434-64846572:-|nuORF	ENST00000275517.7_2_11:64846434-64846572:-|nuORF	ENST00000275517.7_2_11:64846434-64846572:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	542.1661987304688	2	542.8055	1083.59645	-0.60309	-0.00032736	0.16394	8.8987E-05	-0.43915	-0.00023837	542.8053045372919	55.206	0.40557	55.206	54.975	55.381	0					14	7	3	0	0	0	0.78945	1	19782	19782		25.399	14.575	1	2252200			38761	10403	28424	28656	37778	37778					0.05799200137153093
PGRKRRRKHRE	11	Unmodified	_PGRKRRRKHRE_					0	0	0		nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3	nc|ENSG00000170004|Q12873-3|CHD3	nc|ENSG00000170004|Q12873-3|CHD3	MULTI-MSMS	A375_MHC_IP_R1	1	493.03411865234375	3	492.634536	1474.88178	-0.58574	-0.00028855	0.093141	4.5884E-05	-0.4926	-0.00024267	492.634584920462	132.6	1.1171	132.6	132.03	133.15	0					76	21	5	0	0	0	0.73891	1	51237	51237		0.40827	0.31342	1	25602000			38762	14761	28425	28657	37779	37779					0.1633327783376899
PGRKRRRKHRE	11	Unmodified	_PGRKRRRKHRE_					0	0	0		nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3	nc|ENSG00000170004|Q12873-3|CHD3	nc|ENSG00000170004|Q12873-3|CHD3	MULTI-MSMS	A375_MHC_IP_R1	1	493.0342102050781	3	492.634536	1474.88178	-0.59813	-0.00029466	0.26931	0.00013267	-0.32882	-0.00016199	492.63459309315806	133.51	1.7266	133.51	133.1	134.83	0					107	33	5	0	0	0	0.73891	1	51675	51675		0.40827	0.40827	1	56588000			38763	14761	28425	28657	37780	37780					0.1633327783376899
PGRKRRRKHRE	11	Unmodified	_PGRKRRRKHRE_					0	0	0		nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3	nc|ENSG00000170004|Q12873-3|CHD3	nc|ENSG00000170004|Q12873-3|CHD3	MULTI-MSMS	A375_MHC_IP_R2	2	493.0342102050781	3	492.634536	1474.88178	-0.43356	-0.00021359	0.12285	6.052E-05	-0.31071	-0.00015307	492.6345144703167	133.43	2.0326	133.6	132.99	135.03	0.16487					106	39	5	0	0	0	0.73891	1	52447	52447		0.40827	0.31342	1	41339000			38764	14761	28425	28657	37781	37781					0.1633327783376899
PGRRLTLAAI	10	Unmodified	_PGRRLTLAAI_					0	0	0		ENSG00000186790|ENST00000335071|FOXE3	ENSG00000186790|ENST00000335071|FOXE3	ENSG00000186790|ENST00000335071|FOXE3	MULTI-MSMS	A375_MHC_IP_R1	1	356.9254455566406	3	356.560981	1066.66111	-0.13296	-4.741E-05	-0.08247	-2.9406E-05	-0.21543	-7.6815E-05	356.56085210800916	27.709	0.35343	27.709	27.533	27.887	0					9	6	2	0	0	0	0.71946	1	8485	8485		3.5871	0	1	1329900			38765	8776	28426	28658	37782	37782					0.13044819733772783
PGRRLTLAAI	10	Unmodified	_PGRRLTLAAI_					0	0	0		ENSG00000186790|ENST00000335071|FOXE3	ENSG00000186790|ENST00000335071|FOXE3	ENSG00000186790|ENST00000335071|FOXE3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	356.560981	1066.66111	-0.47587	-0.00016968	-0.34919	-0.00012451	-0.82506	-0.00029418	356.5609548923921	26.796	0.46053	27.456	27.262	27.722	0.65992	-0.12663	-0.00015328	NaN	3.5871	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1387100			38766	8776	28426	28658							0.13044819733772783
PGRRPLRLLYL	11	Unmodified	_PGRRPLRLLYL_					0	0	0		ENSG00000167178|ENST00000453268|ISLR2	ENSG00000167178|ENST00000453268|ISLR2	ENSG00000167178|ENST00000453268|ISLR2	MSMS	A375_MHC_IP_R2	2	677.42822265625	2	677.427513	1352.84047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.07	1	116.74	116.24	117.24	0.66841								0	0	0	0.16331	1	43773	43773		1.4819	0	1				38767	7164	28427	28659	37783	37783					0.17816704021743135
PGSCLAMY	8	Unmodified	_PGSCLAMY_					0	0	0			REV__ENST00000337137.8_1_22:47188430-47189438:+|nuORF	REV__ENST00000337137.8_1_22:47188430-47189438:+|nuORF	MSMS	A375_MHC_IP_R1	1	421.1438903808594	2	421.182774	840.350996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.22	1	109.22	108.72	109.72	0								0	0	0	0.16876	1	40064	40064		2.3027	0	1		+		38768	23688	28428	28660	37784	37784					-0.07556539588870237
PGSCSCPACCC	11	Unmodified	_PGSCSCPACCC_					0	0	0		ENST00000469559.5_1_3:38167506-38167863:-|nuORF	ENST00000469559.5_1_3:38167506-38167863:-|nuORF	ENST00000469559.5_1_3:38167506-38167863:-|nuORF	MSMS	A375_MHC_IP_R1	1	515.6460571289062	2	515.649601	1029.28465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.496	1	93.496	92.996	93.996	0								0	0	0	0.16331	1	34368	34368		1.4819	0.68827	1				38769	12322	28429	28661	37785	37785					-0.22882182809098595
PGSLPSSVSA	10	Unmodified	_PGSLPSSVSA_					0	0	0		ENST00000513317.5_1_4:185726682-185726778:-|nuORF	ENST00000513317.5_1_4:185726682-185726778:-|nuORF	ENST00000513317.5_1_4:185726682-185726778:-|nuORF	MSMS	A375_MHC_IP_R2	2	451.1319274902344	2	451.234907	900.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.185	1	37.956	37.456	38.456	0.7709								0	0	0	0.15207	1	13592	13592		13.906	2.2658	1				38770	12930	28430	28662	37786	37786					0.001052017638585312
PGSLRGSN	8	Unmodified	_PGSLRGSN_					0	0	0			REV__ENST00000416709.1_1_6:168687664-168688738:-|nuORF	REV__ENST00000416709.1_1_6:168687664-168688738:-|nuORF	MSMS	A375_MHC_IP_R2	2	394.1395568847656	2	394.206484	786.398415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.297	1	43.069	42.569	43.569	0.7724								0	0	0	0.16876	1	15731	15731		23.148	2.2772	1		+		38771	19715	28431	28663	37787	37787					-0.003328010019913563
PGSLVPLGRAP	11	Unmodified	_PGSLVPLGRAP_					0	0	0			REV__ENST00000395621.7_1_22:51065986-51066424:-|nuORF	REV__ENST00000395621.7_1_22:51065986-51066424:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	354.61328125	3	355.213469	1062.61858	-0.29936	-0.00010634	0.33339	0.00011843	0.034038	1.2091E-05	355.21364345682645	39.414	0.35451	40.189	39.965	40.32	0.77451					13	6	3	0	0	0	0.98748	1	14472	14472		7.0371	0	1	3649200	+		38772	23032	28432	28664	37788	37788					0.0897742460556401
PGSPEWIQL	9	Unmodified	_PGSPEWIQL_					0	0	0		ENSG00000110711|ENST00000279146|AIP	ENSG00000110711|ENST00000279146|AIP	ENSG00000110711|ENST00000279146|AIP	MULTI-MSMS	A375_MHC_IP_R2	2	514.891845703125	2	513.766374	1025.5182	-0.74084	-0.00038062	2.2472	0.0011545	1.5064	0.00077393	513.767088007185	48.399	0.45365	49.157	48.929	49.383	0.75737					15	8	3	0	0	0	0.46038	1	18153	18153		21.747	4.8044	1	3522600			38773	2941	28433	28665	37789	37789					0.0064576755189591495
PGSRGRPP	8	Unmodified	_PGSRGRPP_					0	0	0			REV__ENST00000367178.7_2_6:155054847-155055060:+|nuORF	REV__ENST00000367178.7_2_6:155054847-155055060:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	412.63018798828125	2	412.230294	822.446034	0.045511	1.8761E-05	-0.054074	-2.2291E-05	-0.0085622	-3.5296E-06	412.23021618371024	103.93	5.3908	104.69	102.92	108.31	0.76428					192	105	3	0	0	0	0.77804	1	39807	39807		2.0598	0	1	18640000	+		38774	23962	28434	28666	37790	37790					0.027708979888416252
PGSSEYPLS	9	Unmodified	_PGSSEYPLS_					0	0	0		ZFHX3|p.S1204Y|1|0.27|ENSG00000140836|chr16:72811957-72811957|G/T|missense_variant	ZFHX3|p.S1204Y|1|0.27|ENSG00000140836|chr16:72811957-72811957|G/T|missense_variant	ZFHX3|p.S1204Y|1|0.27|ENSG00000140836|chr16:72811957-72811957|G/T|missense_variant	MSMS	A375_MHC_IP_R2	2	468.6866760253906	2	468.71909	935.423627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.763	1	63.506	63.006	64.006	0.74263								0	0	0	0.1535	1	23793	23793		15.847	0	1				38775	30197	28435	28667	37791	37791					-0.046667909900975246
PGSWHDCVP	9	Unmodified	_PGSWHDCVP_					0	0	0			REV__ENST00000335025.12_1_22:22051218-22051356:+|nuORF	REV__ENST00000335025.12_1_22:22051218-22051356:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	499.1551208496094	2	499.213452	996.412351	-0.4041	-0.00020173	0.096056	4.7953E-05	-0.30805	-0.00015378	499.21345417706584	91.629	0.50645	91.629	91.35	91.857	0					13	9	2	0	0	0	0.62719	1	33648	33648		13.508	2.684	1	739530	+		38776	23666	28436	28668	37792	37792					-0.08599891565222606
PGSWHDCVP	9	Unmodified	_PGSWHDCVP_					0	0	0			REV__ENST00000335025.12_1_22:22051218-22051356:+|nuORF	REV__ENST00000335025.12_1_22:22051218-22051356:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	499.213452	996.412351	-0.4041	-0.00020173	0.096056	4.7953E-05	-0.30805	-0.00015378	499.21345417706584	91.629	0.50645	91.629	91.35	91.857	0	-0.010866	6.5971E-06	NaN	13.508	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	739530	+		38777	23666	28436	28668							-0.08599891565222606
PGSWHDCVP	9	Unmodified	_PGSWHDCVP_					0	0	0			REV__ENST00000335025.12_1_22:22051218-22051356:+|nuORF	REV__ENST00000335025.12_1_22:22051218-22051356:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	499.213452	996.412351	-0.44265	-0.00022098	0.083355	4.1612E-05	-0.35929	-0.00017936	499.21335542514544	90.917	0.45555	91.651	91.362	91.818	0.7345	0.010866	-6.0843E-06	NaN	13.508	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	602520	+		38778	23666	28436	28668							-0.08599891565222606
PGTAVGPH	8	Unmodified	_PGTAVGPH_					0	0	0		ENST00000216129.6_1_22:43563239-43563701:-|nuORF	ENST00000216129.6_1_22:43563239-43563701:-|nuORF	ENST00000216129.6_1_22:43563239-43563701:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	734.771728515625	1	735.378414	734.371138	-0.63291	-0.00046543	-2.0139	-0.001481	-2.6468	-0.0019464	735.3765420798917	141.37	0.51646	141.42	141.06	141.58	0.04216					11	9	2	0	0	0	0.972	1	55252	55252		0.79363	0.79363	1	618670			38779	10090	28437	28669	37793	37793					-0.006672845423963736
PGTAVGPH	8	Unmodified	_PGTAVGPH_					0	0	0		ENST00000216129.6_1_22:43563239-43563701:-|nuORF	ENST00000216129.6_1_22:43563239-43563701:-|nuORF	ENST00000216129.6_1_22:43563239-43563701:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	735.378414	734.371138	-0.89861	-0.00066082	-1.8806	-0.0013829	-2.7792	-0.0020437	735.3765462786538	141.45	0.46342	141.45	141.06	141.52	0	0.016249	6.548E-05	NaN	0.79363	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	580300			38780	10090	28437	28669							-0.006672845423963736
PGTSGEIWSI	10	Unmodified	_PGTSGEIWSI_					0	0	0		ENSG00000183762|ENST00000400335|KREMEN1;nc|ENSG00000183762|Q96MU8|KREMEN1;nc|ENSG00000183762|Q96MU8-2|KREMEN1	ENSG00000183762|ENST00000400335|KREMEN1	ENSG00000183762|ENST00000400335|KREMEN1	MSMS	A375_MHC_IP_R1	1	523.6932983398438	2	523.761289	1045.50803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.4	1	104.4	103.9	104.9	0								0	0	0	0.14862	1	38337	38337		20.454	3.5113	1				38781	8525	28438	28670	37794	37794					-0.012908401733284336
PGTVWWAADH	10	Unmodified	_PGTVWWAADH_					0	0	0		ENST00000586256.1_1_16:4784633-4796526:+|nuORF;ENSG00000166246|ENST00000299320|DNAAF8	ENST00000586256.1_1_16:4784633-4796526:+|nuORF	ENST00000586256.1_1_16:4784633-4796526:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	571.1478271484375	2	570.267073	1138.51959	-0.41655	-0.00023754	-1.0898	-0.00062148	-1.5063	-0.00085902	570.2664958643817	119.69	0.61109	119.69	119.33	119.95	0					17	11	2	0	0	0	0.70329	1	44113	44113		10.824	2.2306	1	9598000			38782	7046	28439	28671	37795	37795					-0.044125983593630735
PGTVWWAADH	10	Unmodified	_PGTVWWAADH_					0	0	0		ENST00000586256.1_1_16:4784633-4796526:+|nuORF;ENSG00000166246|ENST00000299320|DNAAF8	ENST00000586256.1_1_16:4784633-4796526:+|nuORF	ENST00000586256.1_1_16:4784633-4796526:+|nuORF	MSMS	A375_MHC_IP_R1	1	570.210205078125	2	570.267073	1138.51959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.24	1	119.24	118.74	119.74	0								0	0	0	0.15308	1	44032	44032		10.824	3.5347	1				38783	7046	28439	28671	37796	37796					-0.044125983593630735
PGVKRSER	8	Unmodified	_PGVKRSER_					0	0	0			REV__ENSG00000165731|ENST00000355710|RET	REV__ENSG00000165731|ENST00000355710|RET	MSMS	A375_MHC_IP_R2	2	465.16949462890625	2	464.769783	927.525013	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.35	1	118.96	118.46	119.46	0.60909								0	0	0	0.16876	1	44924	44924		15.847	4.2069	1		+		38784	20619	28440	28672	37797	37797					0.05835125223131854
PGVPPLQERRH	11	Unmodified	_PGVPPLQERRH_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MSMS	A375_MHC_IP_R1	1	643.3577270507812	2	643.359828	1284.7051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.13	1	122.13	121.63	122.63	0								0	0	0	0.15541	1	45417	45417		17.113	9.2027	1				38785	14669	28441	28673	37798	37798					0.07413804160114523
PGYKIADYF	9	Unmodified	_PGYKIADYF_					0	0	0			REV__ENSG00000136928|ENST00000259455|GABBR2	REV__ENSG00000136928|ENST00000259455|GABBR2	MULTI-SECPEP	A375_MHC_IP_R2	2	536.6344604492188	2	537.26875	1072.52295	-0.86212	-0.00046319	-1.7547	-0.00094273	-2.6168	-0.0014059	537.2665999885003	75.866	0.71134	76.607	76.232	76.943	0.74052					17	13	2	0	0	0	0.75466	1	28747	28747		12.532	4.6214	1	940820	+		38786	18973	28442	28674	37799	37799					-0.010413483053525852
PGYYSPDY	8	Unmodified	_PGYYSPDY_					0	0	0		ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MSMS	A375_MHC_IP_R2	2	481.171142578125	2	481.200533	960.386513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.747	1	49.505	49.005	50.005	0.75737								0	0	0	0.16876	1	18307	18307		15.768	4.1279	1				38787	7188	28443	28675	37800	37800					-0.09526462535859537
PHCQVDQDGWI	11	Unmodified	_PHCQVDQDGWI_					0	0	0			REV__ENST00000246949.9_1_16:3704910-3705863:+|nuORF	REV__ENST00000246949.9_1_16:3704910-3705863:+|nuORF	MSMS	A375_MHC_IP_R1	1	649.2719116210938	2	649.285137	1296.55572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.07	1	132.07	131.57	132.57	0								0	0	0	0.1629	1	50922	50922		3.5965	0.31518	1		+		38788	23116	28444	28676	37801	37801					-0.08069509244796791
PHCSTICASW	10	Unmodified	_PHCSTICASW_					0	0	0			REV__ENST00000356284.6_2_6:169068153-169068438:+|nuORF	REV__ENST00000356284.6_2_6:169068153-169068438:+|nuORF	MSMS	A375_MHC_IP_R1	1	552.6832275390625	2	552.733694	1103.45284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.229	1	34.229	33.729	34.729	0								0	0	0	0.15308	1	11261	11261		10.824	0.64053	1		+		38789	23832	28445	28677	37802	37802					-0.09475293237119331
PHDWLLRLFCH	11	Unmodified	_PHDWLLRLFCH_					0	0	0		ENST00000533515.5_1_11:57263521-57267149:-|nuORF;ENST00000278426.7_2_11:57263521-57268513:-|nuORF	ENST00000533515.5_1_11:57263521-57267149:-|nuORF	ENST00000533515.5_1_11:57263521-57267149:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	719.2651977539062	2	718.866431	1435.71831	-0.81552	-0.00058625	-0.70604	-0.00050755	-1.5216	-0.0010938	718.8657696271151	132.06	0.1507	132.06	131.98	132.13	0					4	2	2	0	0	0	0.99018	1	50944	50944		11.495	1.9507	1	3999400			38790	10411	28446	28678	37803	37803					0.017879189478662738
PHDWLLRLFCH	11	Unmodified	_PHDWLLRLFCH_					0	0	0		ENST00000533515.5_1_11:57263521-57267149:-|nuORF;ENST00000278426.7_2_11:57263521-57268513:-|nuORF	ENST00000533515.5_1_11:57263521-57267149:-|nuORF	ENST00000533515.5_1_11:57263521-57267149:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	718.866431	1435.71831	-0.73738	-0.00053008	-0.47734	-0.00034314	-1.2147	-0.00087322	718.8660316993228	131.89	0.25127	132.08	131.95	132.2	0.18953	0.0093025	0.00027366	NaN	11.495	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2894100			38791	10411	28446	28678							0.017879189478662738
PHEDMRTW	8	Unmodified	_PHEDMRTW_					0	0	0		ENSG00000198793|ENST00000361445|MTOR;ENST00000495435.1_1_1:11193031-11204809:-|nuORF;ENST00000476768.1_1_1:11199309-11199676:-|nuORF	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	A375_MHC_IP_R2	2	357.93096923828125	3	357.827398	1070.46036	-0.052811	-1.8897E-05	1.4547	0.00052055	1.4019	0.00050165	358.16178490497185	47.476	0.407	48.238	48.073	48.48	0.76128					14	7	3	0	0	0	0.972	1	17882	17882		1.8442	1.5752	1	2289000			38792	9326	28447	28679	37804	37804					-0.07204817645174444
PHEEDLIRL	9	Unmodified	_PHEEDLIRL_					0	0	0			REV__nc|ENSG00000114770|O15440-3|ABCC5;REV__ENSG00000114770|ENST00000334444|ABCC5	REV__ENSG00000114770|ENST00000334444|ABCC5	MSMS	A375_MHC_IP_R2	2	374.4335021972656	3	374.536501	1120.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.267	1	40.042	39.542	40.542	0.77451								0	0	0	0.15486	1	14492	14492		9.544	0.56773	1		+		38793	17841;27183	28448	28680	37805	37805					0.03220226500661738
PHETGRNPFPS	11	Unmodified	_PHETGRNPFPS_					0	0	0		ENST00000314797.10_1_3:128996317-128996440:+|nuORF	ENST00000314797.10_1_3:128996317-128996440:+|nuORF	ENST00000314797.10_1_3:128996317-128996440:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	413.9360656738281	3	413.535271	1237.58398	0.78425	0.00032432	1.2184	0.00050385	2.0027	0.00082817	413.535592983637	69.367	0.40733	69.367	69.121	69.529	0					11	7	2	0	0	0	0.73367	1	25196	25196		5.4027	1.2132	1	1315700			38794	10650	28449	28681	37806	37806					-0.025304432731900306
PHETGRNPFPS	11	Unmodified	_PHETGRNPFPS_					0	0	0		ENST00000314797.10_1_3:128996317-128996440:+|nuORF	ENST00000314797.10_1_3:128996317-128996440:+|nuORF	ENST00000314797.10_1_3:128996317-128996440:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	413.535271	1237.58398	0.78425	0.00032432	1.2184	0.00050385	2.0027	0.00082817	413.535592983637	69.367	0.40733	69.367	69.121	69.529	0	-0.015223	-0.00060632	NaN	5.4027	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1315700			38795	10650	28449	28681							-0.025304432731900306
PHETGRNPFPS	11	Unmodified	_PHETGRNPFPS_					0	0	0		ENST00000314797.10_1_3:128996317-128996440:+|nuORF	ENST00000314797.10_1_3:128996317-128996440:+|nuORF	ENST00000314797.10_1_3:128996317-128996440:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	413.535271	1237.58398	0.12395	5.1258E-05	2.1145	0.00087441	2.2384	0.00092567	413.53602889404465	68.663	0.40381	69.398	69.171	69.575	0.73511	0.015223	0.00050536	NaN	5.4027	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1132000			38796	10650	28449	28681							-0.025304432731900306
PHEYKFPKK	9	Unmodified	_PHEYKFPKK_					0	0	0		PPWD1|p.N262Kfs*7|1|0.34|ENSG00000113593|chr5:65572097-65572098|-/A|frameshift_variant	PPWD1|p.N262Kfs*7|1|0.34|ENSG00000113593|chr5:65572097-65572098|-/A|frameshift_variant	PPWD1|p.N262Kfs*7|1|0.34|ENSG00000113593|chr5:65572097-65572098|-/A|frameshift_variant	MSMS	A375_MHC_IP_R2	2	391.9286193847656	3	391.885353	1172.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.125	1	32.862	32.362	33.362	0.73692								0	0	0	0.15486	1	11403	11403		8.1555	1.1184	1				38797	15217	28450	28682	37807	37807					0.05481711122592969
PHFGAICG	8	Unmodified	_PHFGAICG_					0	0	0			REV__nc|ENSG00000174837|Q14246-5|ADGRE1	REV__nc|ENSG00000174837|Q14246-5|ADGRE1	MULTI-MSMS	A375_MHC_IP_R2	2	401.589599609375	2	401.189248	800.363944	0.15182	6.0908E-05	0.84047	0.00033719	0.99229	0.0003981	401.1895742029655	136.88	0.30939	136.99	136.86	137.17	0.11134					10	5	2	0	0	0	0.77839	1	53752	53752		0.79363	0	1	2265700	+		38798	21306	28451	28683	37808	37808					-0.04422340414453174
PHFGAICG	8	Unmodified	_PHFGAICG_					0	0	0			REV__nc|ENSG00000174837|Q14246-5|ADGRE1	REV__nc|ENSG00000174837|Q14246-5|ADGRE1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	401.189248	800.363944	-0.61691	-0.0002475	0.92179	0.00036981	0.30488	0.00012232	401.18957814334	136.9	0.46208	136.9	136.61	137.08	0	-0.049138	9.2131E-06	NaN	0.79363	9	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1844800	+		38799	21306	28451	28683							-0.04422340414453174
PHFRPRFHA	9	Unmodified	_PHFRPRFHA_					0	0	0			REV__nc|ENSG00000170088|Q8IY95-2|TMEM192	REV__nc|ENSG00000170088|Q8IY95-2|TMEM192	MULTI-MSMS	A375_MHC_IP_R1	1	389.27716064453125	3	388.877303	1163.61008	0.16714	6.4997E-05	-0.9682	-0.00037651	-0.80106	-0.00031151	388.87694992388805	75.89	0.45286	75.89	75.614	76.067	0					15	8	2	0	0	0	0.75523	1	27690	27690		1.0715	1.0715	1	2514900	+		38800	20965	28452	28684	37809	37809					0.03481915479596864
PHFRPRFHA	9	Unmodified	_PHFRPRFHA_					0	0	0			REV__nc|ENSG00000170088|Q8IY95-2|TMEM192	REV__nc|ENSG00000170088|Q8IY95-2|TMEM192	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	388.877303	1163.61008	0.16714	6.4997E-05	-0.9682	-0.00037651	-0.80106	-0.00031151	388.87694992388805	75.89	0.45286	75.89	75.614	76.067	0	0.011463	-0.00016265	NaN	1.0715	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2514900	+		38801	20965	28452	28684							0.03481915479596864
PHFRPRFHA	9	Unmodified	_PHFRPRFHA_					0	0	0			REV__nc|ENSG00000170088|Q8IY95-2|TMEM192	REV__nc|ENSG00000170088|Q8IY95-2|TMEM192	MULTI-MATCH	A375_MHC_IP_R2	2		3	388.877303	1163.61008	-0.2054	-7.9874E-05	-0.73215	-0.00028472	-0.93755	-0.00036459	388.8769422723235	75.13	0.50455	75.867	75.519	76.023	0.73752	-0.011463	0.00011273	NaN	1.0715	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1643000	+		38802	20965	28452	28684							0.03481915479596864
PHGFISYRL	9	Unmodified	_PHGFISYRL_					0	0	0		ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50;nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	ENSG00000105197|ENST00000607714|TIMM50	ENSG00000105197|ENST00000607714|TIMM50	MULTI-SECPEP	A375_MHC_IP_R2	2	364.265869140625	3	363.866181	1088.57671	0.070193	2.5541E-05	-0.40449	-0.00014718	-0.33429	-0.00012164	363.86604348028527	47.761	0.80922	48.523	48.225	49.034	0.76127					23	15	2	0	0	0	0.62767	1	17957	17957		11.495	0	1	3232100			38803	2574	28453	28685	37810	37810					0.03596868917043139
PHGGGGGG	8	Unmodified	_PHGGGGGG_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;ENSG00000103241|ENST00000262426|FOXF1	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	594.7606811523438	1	595.258299	594.251023	-0.74585	-0.00044397	2.3562	0.0014025	1.6103	0.00095855	595.2623506294183	142.06	0.55688	142.06	141.88	142.44	0					15	10	2	0	0	0	0.972	1	54620	54620		0	0	1	528200			38804	6633	28454	28686	37811	37811					-0.06233272816132285
PHGITDILSR	10	Unmodified	_PHGITDILSR_					0	0	0		ENSG00000165066|ENST00000518699|NKX6-3	ENSG00000165066|ENST00000518699|NKX6-3	ENSG00000165066|ENST00000518699|NKX6-3	MSMS	A375_MHC_IP_R1	1	554.7090454101562	2	554.809105	1107.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.17	1	124.17	123.67	124.67	0								0	0	0	0.14741	1	46638	46638		22.736	3.4793	1				38805	6907	28455	28687	37812	37812					0.0541593273756007
PHGTAAPLL	9	Unmodified	_PHGTAAPLL_					0	0	0			REV__ENST00000490491.5_2_1:156203516-156212950:+|nuORF	REV__ENST00000490491.5_2_1:156203516-156212950:+|nuORF	MSMS	A375_MHC_IP_R1	1	438.59991455078125	2	438.750527	875.486502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.053	1	68.053	67.553	68.553	0								0	0	0	0.1521	1	24667	24667		18.135	0	1		+		38806	25385	28456	28688	37813	37813					0.04377819588614784
PHHRIRKTIPN	11	Unmodified	_PHHRIRKTIPN_					0	0	0			REV__ENSG00000138356|ENST00000374700|AOX1	REV__ENSG00000138356|ENST00000374700|AOX1	MULTI-SECPEP	A375_MHC_IP_R1	1	684.7849731445312	2	684.902194	1367.78984	-0.87715	-0.00060076	-1.2429	-0.00085125	-2.12	-0.001452	685.402890263384	132.92	0.51215	132.92	132.74	133.25	0					15	9	2	0	0	0	0.99921	1	51345	51345		0.30703	0.30703	1	4357300	+		38807	19088	28457	28689	37814	37814					0.12065174696749636
PHLEITLRD	9	Unmodified	_PHLEITLRD_					0	0	0			REV__ENSG00000178913|ENST00000313368|TAF7	REV__ENSG00000178913|ENST00000313368|TAF7	MULTI-MSMS	A375_MHC_IP_R2	2	365.6047668457031	3	365.204862	1092.59276	-0.26956	-9.8444E-05	0.18952	6.9215E-05	-0.080035	-2.9229E-05	365.20489358809255	58.282	0.35835	59.031	58.929	59.287	0.74894					15	6	3	0	0	0	0.62719	1	22064	22064		8.7454	0	1	2846900	+		38808	21524	28458	28690	37815	37815					0.0501653036328662
PHLELPLKK	9	Unmodified	_PHLELPLKK_					0	0	0		ENST00000431108.5_1_6:74233390-74234196:+|nuORF	ENST00000431108.5_1_6:74233390-74234196:+|nuORF	ENST00000431108.5_1_6:74233390-74234196:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	359.2498779296875	3	358.893848	1073.65972	-0.46717	-0.00016767	-0.65272	-0.00023426	-1.1199	-0.00040192	358.89364155752395	57.974	0.45174	58.723	58.477	58.929	0.74894					15	8	2	0	0	0	0.68046	1	21927	21927		8.7454	2.5536	1	1389200			38809	11865	28459	28691	37816	37816					0.12583185645053163
PHLLSFATR	9	Unmodified	_PHLLSFATR_					0	0	0			REV__ENST00000497928.1_1_2:171786141-171786294:+|nuORF	REV__ENST00000497928.1_1_2:171786141-171786294:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	520.7164306640625	2	521.295633	1040.57671	-0.43259	-0.00022551	0.80967	0.00042208	0.37708	0.00019657	521.2958740636151	63.116	0.30769	63.116	62.966	63.274	0					10	5	2	0	0	0	0.76187	1	22764	22764		11.64	3.4848	1	1273200	+		38810	25473	28460	28692	37817	37817					0.058048689170163925
PHLPLAFLV	9	Unmodified	_PHLPLAFLV_					0	0	0		PCDHB8|p.S503F|1|0.17|ENSG00000120322|chr5:141179542-141179542|C/T|missense_variant;PCDHB7|p.S502F|1|0.45|ENSG00000113212|chr5:141174340-141174340|C/T|missense_variant;PCDHB2|p.S504F|1|0.49|ENSG00000112852|chr5:141096301-141096301|C/T|missense_variant	PCDHB8|p.S503F|1|0.17|ENSG00000120322|chr5:141179542-141179542|C/T|missense_variant	PCDHB8|p.S503F|1|0.17|ENSG00000120322|chr5:141179542-141179542|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	503.7056579589844	2	503.807845	1005.60114	-0.18968	-9.5564E-05	-0.19063	-9.604E-05	-0.38031	-0.0001916	503.80767263804853	110.05	0.55846	110.05	109.68	110.24	0					18	10	2	0	0	0	0.64653	1	40332	40332		9.3474	0	1	1894200			38811	15134	28461	28693	37818	37818					0.09856129070556108
PHPPPPPPP	9	Unmodified	_PHPPPPPPP_					0	0	0		ENSG00000048991|ENST00000683871|R3HDM1;nc|ENSG00000048991|Q15032-3|R3HDM1;nc|ENSG00000048991|Q15032|R3HDM1;nc|ENSG00000048991|Q15032-4|R3HDM1;nc|ENSG00000048991|Q15032-2|R3HDM1;nc|ENSG00000175879|P13378-2|HOXD8;ENSG00000175879|ENST00000313173|HOXD8;ENST00000424808.6_1_8:66582187-66620357:+|nuORF;ENSG00000066855|ENST00000262146|MTFR1;nc|ENSG00000066855|Q15390-2|MTFR1	ENSG00000048991|ENST00000683871|R3HDM1	ENSG00000048991|ENST00000683871|R3HDM1	MULTI-MSMS	A375_MHC_IP_R1	1	467.2729797363281	2	466.75307	931.491587	-0.35449	-0.00016546	-0.0226	-1.0549E-05	-0.37709	-0.00017601	466.75296048697294	25.11	4.8057	25.11	24.647	29.453	0					182	94	4	0	0	0	0.011986	1	7579	7579		93.763	0	1	31506000			38812	1218	28462	28694	37819	37819					0.0231012345121826
PHPPPPPPP	9	Unmodified	_PHPPPPPPP_					0	0	0		ENSG00000048991|ENST00000683871|R3HDM1;nc|ENSG00000048991|Q15032-3|R3HDM1;nc|ENSG00000048991|Q15032|R3HDM1;nc|ENSG00000048991|Q15032-4|R3HDM1;nc|ENSG00000048991|Q15032-2|R3HDM1;nc|ENSG00000175879|P13378-2|HOXD8;ENSG00000175879|ENST00000313173|HOXD8;ENST00000424808.6_1_8:66582187-66620357:+|nuORF;ENSG00000066855|ENST00000262146|MTFR1;nc|ENSG00000066855|Q15390-2|MTFR1	ENSG00000048991|ENST00000683871|R3HDM1	ENSG00000048991|ENST00000683871|R3HDM1	MULTI-MSMS	A375_MHC_IP_R2	2	467.1524353027344	2	466.75307	931.491587	-1.0064	-0.00046974	0.21277	9.931E-05	-0.79363	-0.00037043	466.7530815471432	24.634	4.4234	25.278	24.755	29.179	0.64368					181	86	4	0	0	0	0.0095977	1	8232	8232		109.15	0	1	36541000			38813	1218	28462	28694	37820	37820					0.0231012345121826
PHPPRFARVE	10	Unmodified	_PHPPRFARVE_					0	0	0			REV__ENST00000378078.4_1_9:35756983-35757355:+|nuORF	REV__ENST00000378078.4_1_9:35756983-35757355:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	402.63348388671875	3	402.556118	1204.64652	-0.25908	-0.00010429	-1.3864	-0.0005581	-1.6455	-0.00066239	402.5556234564757	54.496	0.30371	54.496	54.263	54.567	0					9	5	2	0	0	0	0.72392	1	19487	19487		1.5923	0.26264	1	532160	+		38814	24173	28463	28695	37821	37821					0.05238747585667625
PHQAHPEDPQV	11	Unmodified	_PHQAHPEDPQV_					0	0	0		ENST00000286827.7_1_21:32513514-32519253:-|nuORF	ENST00000286827.7_1_21:32513514-32519253:-|nuORF	ENST00000286827.7_1_21:32513514-32519253:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	419.6178283691406	3	418.866909	1253.5789	-0.40303	-0.00016882	0.15439	6.4669E-05	-0.24864	-0.00010415	418.867153673081	38.275	0.30603	39.049	38.843	39.149	0.77451					6	5	2	0	0	0	0.98591	1	14050	14050		4.7159	2.4632	1	717410			38815	10453	28464	28696	37822	37822					-0.03774747135844336
PHQQHLRR	8	Unmodified	_PHQQHLRR_					0	0	0			REV__ENST00000300954.9_1_19:1483001-1487678:-|nuORF	REV__ENST00000300954.9_1_19:1483001-1487678:-|nuORF	MSMS	A375_MHC_IP_R2	2	357.93096923828125	3	357.868808	1070.58459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.675	1	48.436	47.936	48.936	0.76128								0	0	0	0.16876	1	17882	17882		1.8442	0.6509	1		+		38816	23420	28465	28697	37823	37823					0.05212440957166109
PHRRCLLRHVP	11	Unmodified	_PHRRCLLRHVP_					0	0	0			REV__ENSG00000188315|ENST00000343010|C3orf62	REV__ENSG00000188315|ENST00000343010|C3orf62	MULTI-MSMS	A375_MHC_IP_R1	1	693.2998657226562	2	692.398764	1382.78298	-0.87201	-0.00060378	1.6966	0.0011747	0.82462	0.00057097	692.401041081179	132.95	1.4789	132.95	132.49	133.97	0					57	28	3	0	0	0	0.7359	1	51329	51329		3.2813	0.28607	1	9893500	+		38817	22084	28466	28698	37824	37824					0.10689538544511379
PHRRCLLRHVP	11	Unmodified	_PHRRCLLRHVP_					0	0	0			REV__ENSG00000188315|ENST00000343010|C3orf62	REV__ENSG00000188315|ENST00000343010|C3orf62	MULTI-MSMS	A375_MHC_IP_R2	2	693.298095703125	2	692.398764	1382.78298	-0.61842	-0.00042819	1.349	0.00093406	0.73059	0.00050586	692.4008186225013	132.86	1.3205	133.03	132.74	134.06	0.16487					54	25	3	0	0	0	0.7359	1	52409	52409		3.2813	0.28607	1	9992400	+		38818	22084	28466	28698	37825	37825					0.10689538544511379
PHRVRGPR	8	Unmodified	_PHRVRGPR_					0	0	0		nc|ENSG00000005436|P16383-2|GCFC2;ENSG00000005436|ENST00000321027|GCFC2;nc|ENSG00000005436|P16383-3|GCFC2;nc|ENSG00000005436|P16383-4|GCFC2	nc|ENSG00000005436|P16383-2|GCFC2	nc|ENSG00000005436|P16383-2|GCFC2	MULTI-MSMS	A375_MHC_IP_R2	2	488.1907653808594	2	487.791384	973.568215	-0.54896	-0.00026778	-0.53282	-0.00025991	-1.0818	-0.00052769	487.7911086493026	131.89	0.6075	132.08	131.9	132.51	0.18953					17	11	3	0	0	0	0.77781	1	51904	51904		2.8892	0	1	10686000			38819	892	28467	28699	37826	37826					0.0803735979108069
PHTIRPRSTL	10	Unmodified	_PHTIRPRSTL_					0	0	0			REV__ENSG00000139269|ENST00000266646|INHBE	REV__ENSG00000139269|ENST00000266646|INHBE	MULTI-MSMS	A375_MHC_IP_R1	1	589.7431030273438	2	589.343646	1176.67274	-0.018495	-1.09E-05	-1.0249	-0.000604	-1.0434	-0.0006149	589.3429110765745	127.95	2.075	127.95	126.41	128.48	0					137	40	5	0	0	0	0.72014	1	48446	48446		3.2813	1.4371	1	265560000	+		38820	19145	28468	28700	37827	37827					0.09147016757151505
PHTIRPRSTL	10	Unmodified	_PHTIRPRSTL_					0	0	0			REV__ENSG00000139269|ENST00000266646|INHBE	REV__ENSG00000139269|ENST00000266646|INHBE	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	589.343646	1176.67274	-0.018495	-1.09E-05	-1.0249	-0.000604	-1.0434	-0.0006149	589.3429110765745	127.95	2.075	127.95	126.41	128.48	0	0.10651	-9.0821E-05	NaN	3.2813	137	40	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265560000	+		38821	19145	28468	28700							0.09147016757151505
PHTRLYNYFS	10	Unmodified	_PHTRLYNYFS_					0	0	0			REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2	REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MSMS	A375_MHC_IP_R2	2	649.2731323242188	2	649.319837	1296.62512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.8	1	131.99	131.49	132.49	0.18953								0	0	0	0.15435	1	51845	51845		6.7232	1.8262	1		+		38822	17302	28469	28701	37828	37828					-0.011326822337196063
PHTSWETYPR	10	Unmodified	_PHTSWETYPR_					0	0	0		C4BPA|p.A308T|1|0.48|ENSG00000123838|chr1:207131578-207131578|G/A|missense_variant	C4BPA|p.A308T|1|0.48|ENSG00000123838|chr1:207131578-207131578|G/A|missense_variant	C4BPA|p.A308T|1|0.48|ENSG00000123838|chr1:207131578-207131578|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	424.5946960449219	3	425.203522	1272.58874	-0.097368	-4.1401E-05	-0.044255	-1.8817E-05	-0.14162	-6.0218E-05	425.5377994807385	42.64	0.20348	43.413	43.319	43.523	0.7724					5	3	2	0	0	0	0.93578	1	15833	15833		5.7834	1.2546	1	1545600			38823	268	28470	28702	37829	37829					-0.03665559130445217
PHTYTYMAV	9	Unmodified	_PHTYTYMAV_					0	0	0			REV__ENST00000372390.8_1_X:106957032-106957083:-|nuORF	REV__ENST00000372390.8_1_X:106957032-106957083:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	542.151611328125	2	541.75241	1081.49027	-1.0382	-0.00056244	1.9926	0.0010795	0.95436	0.00051703	541.7520845822645	34.871	1.9801	35.634	35.068	37.048	0.76338					51	38	3	0	0	0	0.13491	1	12655	12655		44.407	10.005	1	2631700	+		38824	24063	28471	28703	37830	37830					-0.047218786998428186
PHVFRKKNRR	10	Unmodified	_PHVFRKKNRR_					0	0	0		nc|ENSG00000010379|Q9NSD5-2|SLC6A13;ENSG00000010379|ENST00000343164|SLC6A13	nc|ENSG00000010379|Q9NSD5-2|SLC6A13	nc|ENSG00000010379|Q9NSD5-2|SLC6A13	MULTI-MSMS	A375_MHC_IP_R1	1	670.3057861328125	2	669.404904	1336.79525	-0.95658	-0.00064034	0.23551	0.00015765	-0.72107	-0.00048269	669.4042880481927	149.15	2.2083	149.15	147.8	150	0					233	71	5	0	0	0	0.72645	3	56715	56715;56830;57016		0.45834	0.45834	1	1498400			38825	982	28472	28704	37831;37832;37833	37831					0.1403289827919707
PHVFRKKNRR	10	Unmodified	_PHVFRKKNRR_					0	0	0		nc|ENSG00000010379|Q9NSD5-2|SLC6A13;ENSG00000010379|ENST00000343164|SLC6A13	nc|ENSG00000010379|Q9NSD5-2|SLC6A13	nc|ENSG00000010379|Q9NSD5-2|SLC6A13	MULTI-MSMS	A375_MHC_IP_R2	2	669.8038330078125	2	669.404904	1336.79525	-0.58143	-0.00038921	-0.040473	-2.7093E-05	-0.6219	-0.0004163	669.404119095689	149.2	2.1323	149.22	147.88	150.01	0.018707					267	76	5	0	0	0	0.72645	2	57799	57799;57998		0.45834	0.10771	1	1219000			38826	982	28472	28704	37834;37835	37834					0.1403289827919707
PHVLQHNRR	9	Unmodified	_PHVLQHNRR_					0	0	0		ENST00000422735.1_1_9:88989919-88990300:-|nuORF	ENST00000422735.1_1_9:88989919-88990300:-|nuORF	ENST00000422735.1_1_9:88989919-88990300:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	385.5927429199219	3	386.219729	1155.63736	-0.26141	-0.00010096	2.1886	0.00084528	1.9272	0.00074432	386.2201113686439	30.156	0.30518	30.875	30.759	31.064	0.71857					7	5	2	0	0	0	0.77834	1	10659	10659		2.7352	0	1	894140			38827	11751	28473	28705	37836	37836					0.06576399019968449
PHYYPLNW	8	Unmodified	_PHYYPLNW_					0	0	0			REV__ENSG00000227729|ENST00000557640|RD3L	REV__ENSG00000227729|ENST00000557640|RD3L	MULTI-SECPEP	A375_MHC_IP_R2	2	364.2549743652344	3	363.843265	1088.50797	0.028743	1.0458E-05	3.9057	0.001421	3.9344	0.0014315	364.17898145901296	27.343	0.25487	28.021	27.843	28.098	0.67857					6	4	2	0	0	0	0.92215	1	9359	9359		11.64	0	1	711360	+		38828	22732	28474	28706	37837	37837					-0.03274795382662887
PIAPLSPLV	9	Unmodified	_PIAPLSPLV_					0	0	0			REV__nc|ENSG00000138347|Q86TC9-2|MYPN	REV__nc|ENSG00000138347|Q86TC9-2|MYPN	MULTI-SECPEP	A375_MHC_IP_R2	2	454.18658447265625	2	453.786579	905.558604	-0.11129	-5.0503E-05	0.097549	4.4266E-05	-0.013744	-6.2366E-06	453.7865563060924	93.437	0.55908	94.181	93.853	94.412	0.74432					25	10	3	0	0	0	0.48581	1	35510	35510		24.674	12.142	1	3637300	+		38829	19087	28475	28707	37838	37838					0.1020473394231658
PIAPPRAPI	9	Unmodified	_PIAPPRAPI_					0	0	0			REV__ENST00000546921.1_1_12:53343064-53343187:-|nuORF	REV__ENST00000546921.1_1_12:53343064-53343187:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	466.6895446777344	2	466.28982	930.565087	-0.161	-7.5073E-05	-0.34396	-0.00016039	-0.50496	-0.00023546	466.2896100063076	55.985	0.60847	55.985	55.738	56.347	0					18	11	2	0	0	0	0.16229	1	20048	20048		48.346	0	1	4730400	+		38830	26003	28476	28708	37839	37839					0.09702671893705883
PIAVPSDKQ	9	Unmodified	_PIAVPSDKQ_					0	0	0			REV__ENSG00000100368|ENST00000403662|CSF2RB	REV__ENSG00000100368|ENST00000403662|CSF2RB	MULTI-SECPEP	A375_MHC_IP_R2	2	478.1659851074219	2	477.766374	953.518196	-0.54123	-0.00025858	-0.036263	-1.7325E-05	-0.5775	-0.00027591	477.76624704550795	108.11	0.86818	108.86	108.46	109.32	0.75436					28	16	2	0	0	0	0.74651	1	40828	40828		13.508	11.205	1	1891600	+		38831	17084	28477	28709	37840	37840					0.0395776755190127
PIAYQGQITY	10	Unmodified	_PIAYQGQITY_					0	0	0			REV__ENSG00000183570|ENST00000681687|PCBP3	REV__ENSG00000183570|ENST00000681687|PCBP3	MULTI-SECPEP	A375_MHC_IP_R1	1	577.6972045898438	2	577.298039	1152.58152	-0.20771	-0.00011991	-1.0215	-0.00058968	-1.2292	-0.00070959	577.2978763281552	91.663	0.60697	91.663	91.299	91.906	0					17	11	2	0	0	0	0.88918	1	33665	33665		13.042	0	1	2448100	+		38832	21763	28478	28710	37841	37841					0.011337082691625255
PICASPSRRTP	11	Unmodified	_PICASPSRRTP_					0	0	0		ENST00000600610.5_1_19:17448460-17449192:+|nuORF;ENST00000596001.5_1_19:17448603-17449192:+|nuORF	ENST00000600610.5_1_19:17448460-17449192:+|nuORF	ENST00000600610.5_1_19:17448460-17449192:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	395.9452819824219	3	395.545002	1183.61318	-0.071052	-2.8104E-05	0.58083	0.00022974	0.50978	0.00020164	395.5451916820141	67.837	0.86571	68.572	68.204	69.07	0.73511					34	16	3	0	0	0	0.72728	1	25687	25687		6.2344	2.3884	1	2724000			38833	13838	28479	28711	37842	37842					0.028713777514440153
PICLLRRRRSR	11	Unmodified	_PICLLRRRRSR_					0	0	0			REV__ENST00000397992.5_1_16:73092794-73093010:-|nuORF	REV__ENST00000397992.5_1_16:73092794-73093010:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	713.8374633789062	2	713.438421	1424.86229	-0.78435	-0.00055959	-0.33041	-0.00023572	-1.1148	-0.00079531	713.4381892618785	84.386	1.1193	84.386	84.091	85.21	0					42	21	3	0	0	0	0.99921	1	31168	31168		0.30703	0	1	25913000	+		38834	24369	28480	28712	37843	37843					0.166851854986362
PIDDSVASLVI	11	Unmodified	_PIDDSVASLVI_					0	0	0		ENST00000597326.5_3_19:6361768-6366330:+|nuORF;ENST00000594780.1_1_19:6361708-6364854:+|nuORF;ENSG00000125656|ENST00000245816|CLPP	ENST00000597326.5_3_19:6361768-6366330:+|nuORF	ENST00000597326.5_3_19:6361768-6366330:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	565.0764770507812	2	564.810979	1127.6074	-0.28285	-0.00015976	-0.097505	-5.5072E-05	-0.38036	-0.00021483	564.8109107697668	141.9	0.40286	141.93	141.77	142.18	0.030731					10	7	2	0	0	0	0.99955	1	55542	55542		2.9952	1.8019	1	633320			38835	3977	28481	28713	37844	37844					0.048705577207556416
PIDVLSLV	8	Unmodified	_PIDVLSLV_					0	0	0			REV__ENST00000582438.1_1_17:80401329-80402344:-|nuORF	REV__ENST00000582438.1_1_17:80401329-80402344:-|nuORF	MSMS	A375_MHC_IP_R2	2	428.3166809082031	2	428.262936	854.51132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.695	1	74.43	73.93	74.93	0.73541								0	0	0	0.16876	1	27971	27971		10.183	0	1		+		38836	23739	28482	28714	37845	37845					0.07824454671344938
PIEGKLVKNVP	11	Unmodified	_PIEGKLVKNVP_					0	0	0			REV__nc|ENSG00000140992|O15530-2|PDPK1	REV__nc|ENSG00000140992|O15530-2|PDPK1	MULTI-MSMS	A375_MHC_IP_R2	2	398.9798583984375	3	398.579929	1192.71796	0.11781	4.6955E-05	-0.15876	-6.3278E-05	-0.040951	-1.6322E-05	398.5798475081853	43.734	1.3658	44.503	44.177	45.543	0.76909					68	26	4	0	0	0	0.72565	1	16525	16525		7.0371	0.41363	1	63092000	+		38837	19238	28483	28715	37846	37846					0.12930822499652095
PIGARPLL	8	Unmodified	_PIGARPLL_					0	0	0			REV__ENST00000528536.1_1_11:407254-407829:-|nuORF	REV__ENST00000528536.1_1_11:407254-407829:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	419.1709899902344	2	418.771263	835.527973	0.17992	7.5344E-05	-0.25845	-0.00010823	-0.078528	-3.2885E-05	418.7709827428059	81.61	0.50636	81.61	81.353	81.86	0					12	9	2	0	0	0	0.70179	1	29849	29849		34.187	0	1	1227500	+		38838	25804	28484	28716	37847	37847					0.10363000347956586
PIGARPLL	8	Unmodified	_PIGARPLL_					0	0	0			REV__ENST00000528536.1_1_11:407254-407829:-|nuORF	REV__ENST00000528536.1_1_11:407254-407829:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	419.171142578125	2	418.771263	835.527973	-0.10179	-4.2629E-05	-0.068036	-2.8492E-05	-0.16983	-7.112E-05	418.77115701267746	80.472	0.40668	81.217	81.062	81.468	0.74473					12	7	2	0	0	0	0.70179	1	30591	30591		34.187	0	1	1224700	+		38839	25804	28484	28716	37848	37848					0.10363000347956586
PIGARPLL	8	Unmodified	_PIGARPLL_					0	0	0			REV__ENST00000528536.1_1_11:407254-407829:-|nuORF	REV__ENST00000528536.1_1_11:407254-407829:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	418.771263	835.527973	0.17992	7.5344E-05	-0.25845	-0.00010823	-0.078528	-3.2885E-05	418.7709827428059	81.61	0.50636	81.61	81.353	81.86	0	0.19635	-7.7443E-05	NaN	34.187	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1227500	+		38840	25804	28484	28716							0.10363000347956586
PIGARPLL	8	Unmodified	_PIGARPLL_					0	0	0			REV__ENST00000528536.1_1_11:407254-407829:-|nuORF	REV__ENST00000528536.1_1_11:407254-407829:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	418.771263	835.527973	-0.10179	-4.2629E-05	-0.068036	-2.8492E-05	-0.16983	-7.112E-05	418.77115701267746	80.472	0.40668	81.217	81.062	81.468	0.74473	-0.19635	8.2032E-05	NaN	34.187	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1224700	+		38841	25804	28484	28716							0.10363000347956586
PIGERKYEE	9	Unmodified	_PIGERKYEE_					0	0	0			REV__ENSG00000166866|ENST00000300119|MYO1A	REV__ENSG00000166866|ENST00000300119|MYO1A	MULTI-SECPEP	A375_MHC_IP_R1	1	374.3086853027344	3	374.192623	1119.55604	0.16601	6.2119E-05	-3.1209	-0.0011678	-2.9549	-0.0011057	374.5260247671806	19.34	0.38484	19.34	19.238	19.623	0					12	7	2	0	0	0	0.775	1	4720	4720		10.8	5.0677	1	1863400	+		38842	20712	28485	28717	37849	37849					0.0010423374669699115
PIHHDMVEW	9	Unmodified	_PIHHDMVEW_					0	0	0			REV__ENST00000470811.5_1_3:156544101-156697065:+|nuORF	REV__ENST00000470811.5_1_3:156544101-156697065:+|nuORF	MSMS	A375_MHC_IP_R2	2	582.1788330078125	2	582.268758	1162.52296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.446	1	70.18	69.68	70.68	0.73421								0	0	0	0.15486	1	26317	26317		13.508	2.684	1		+		38843	25108	28486	28718	37850	37850					-0.05179671576979672
PIHHDMVEW	9	Unmodified	_PIHHDMVEW_					0	0	0			REV__ENST00000470811.5_1_3:156544101-156697065:+|nuORF	REV__ENST00000470811.5_1_3:156544101-156697065:+|nuORF	MSMS	A375_MHC_IP_R2	2	582.1753540039062	2	582.268758	1162.52296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.682	1	95.427	94.927	95.927	0.74474								0	0	0	0.15486	1	35977	35977		13.508	0.97634	1		+		38844	25108	28486	28718	37851	37851					-0.05179671576979672
PIHPTFQPFIH	11	Unmodified	_PIHPTFQPFIH_					0	0	0		ENST00000280800.4_1_12:113827935-113828904:+|nuORF	ENST00000280800.4_1_12:113827935-113828904:+|nuORF	ENST00000280800.4_1_12:113827935-113828904:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	444.66351318359375	3	445.239907	1332.69789	-0.073059	-3.2529E-05	-0.63532	-0.00028287	-0.70838	-0.0003154	445.2395507679923	36.184	0.45726	36.184	35.881	36.339	0					9	8	2	0	0	0	0.99805	1	12093	12093		1.4551	1.2958	1	1136300			38845	10421	28487	28719	37852	37852					0.04485071559724929
PIHPTFQPFIH	11	Unmodified	_PIHPTFQPFIH_					0	0	0		ENST00000280800.4_1_12:113827935-113828904:+|nuORF	ENST00000280800.4_1_12:113827935-113828904:+|nuORF	ENST00000280800.4_1_12:113827935-113828904:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	445.239907	1332.69789	-0.61921	-0.0002757	-0.50665	-0.00022558	-1.1259	-0.00050128	445.23976966584496	35.305	0.45458	36.069	35.929	36.384	0.76338	-0.057592	2.8404E-05	NaN	1.4551	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1149600			38846	10421	28487	28719							0.04485071559724929
PIHSLRNVR	9	Unmodified	_PIHSLRNVR_					0	0	0		ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MULTI-SECPEP	A375_MHC_IP_R2	2	365.2538757324219	3	364.552597	1090.63596	-0.29059	-0.00010594	1.908	0.00069555	1.6174	0.00058962	364.5532435231731	57.854	0.76029	58.603	58.323	59.083	0.74894					19	14	2	0	0	0	0.77834	1	21901	21901		2.7352	0.23671	1	3465000			38847	1486	28488	28720	37853	37853					0.09426764931231446
PIKDFFLLL	9	Unmodified	_PIKDFFLLL_					0	0	0		tr|U7SKV9|U7SKV9_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01950PE=4SV=1	tr|U7SKV9|U7SKV9_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01950PE=4SV=1	tr|U7SKV9|U7SKV9_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01950PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	369.6058349609375	3	369.226716	1104.65832	-0.099462	-3.6724E-05	3.3431	0.0012344	3.2436	0.0011976	369.227737394427	24.796	1.323	25.439	24.705	26.028	0.64368					42	25	3	0	0	0	0.65748	1	8148	8148		10.8	4.9314	1	13877000			38848	29486	28489	28721	37854	37854					0.11017551556301441
PIKEKLQKY	9	Unmodified	_PIKEKLQKY_					0	0	0		tr|U7SRP2|U7SRP2_FUSNUGlucokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01608PE=4SV=1	tr|U7SRP2|U7SRP2_FUSNUGlucokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01608PE=4SV=1	tr|U7SRP2|U7SRP2_FUSNUGlucokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01608PE=4SV=1	MSMS	A375_MHC_IP_R2	2	382.8966369628906	3	382.900891	1145.68084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.43	1	27.09	26.59	27.59	0.65992								0	0	0	0.15486	1	8930	8930		2.7352	0	1				38849	29617	28490	28722	37855	37855					0.11383150953884069
PIKEYVVRK	9	Unmodified	_PIKEYVVRK_					0	0	0		ENST00000380172.8_1_9:21862081-21862168:+|nuORF	ENST00000380172.8_1_9:21862081-21862168:+|nuORF	ENST00000380172.8_1_9:21862081-21862168:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	377.285400390625	3	377.901003	1130.68118	0.41571	0.0001571	0.027703	1.0469E-05	0.44341	0.00016757	377.9010336541702	62.139	0.35695	62.139	61.994	62.351	0					10	6	2	0	0	0	0.7911	1	22378	22378		7.609	0	1	1440500			38850	11348	28491	28723	37856	37856					0.12106570673768147
PIKGEYGEKGY	11	Unmodified	_PIKGEYGEKGY_					0	0	0			REV__nc|ENSG00000079150|Q9Y680-3|FKBP7	REV__nc|ENSG00000079150|Q9Y680-3|FKBP7	MULTI-SECPEP	A375_MHC_IP_R1	1	621.4788208007812	2	620.814053	1239.61355	0.013121	8.1459E-06	-0.37858	-0.00023503	-0.36546	-0.00022688	620.8139547475079	69.711	0.65748	69.711	69.377	70.034	0					23	12	3	0	0	0	0.99227	1	25197	25197		9.3831	8.0536	1	2801300	+		38851	27120	28492	28724	37857	37857					0.0033307595228961873
PIKISQAICV	10	Unmodified	_PIKISQAICV_					0	0	0			REV__ENSG00000113262|ENST00000517717|GRM6	REV__ENSG00000113262|ENST00000517717|GRM6	MULTI-SECPEP	A375_MHC_IP_R2	2	536.635986328125	2	536.315177	1070.6158	-0.75335	-0.00040403	-3.6599	-0.0019629	-4.4133	-0.0023669	536.3129778820672	87.08	0.75856	87.813	87.509	88.268	0.733					19	14	2	0	0	0	0.78945	1	33148	33148		19.257	1.1106	1	2357600	+		38852	17771	28493	28725	37858	37858					0.08331833156398716
PIKVNKKL	8	Unmodified	_PIKVNKKL_					0	0	0			REV__ENST00000474188.1_1_3:52512241-52512382:+|nuORF	REV__ENST00000474188.1_1_3:52512241-52512382:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	471.1034851074219	2	470.32112	938.627687	-0.281	-0.00013216	0.3972	0.00018681	0.11619	5.4647E-05	470.32127805610713	62.258	0.35752	62.258	62.097	62.454	0					9	6	2	0	0	0	0.94479	1	22419	22419		13.508	0	1	874600	+		38853	25157	28494	28726	37859	37859					0.15591817961876586
PILAPEPLV	9	Unmodified	_PILAPEPLV_					0	0	0		ENST00000544307.1_1_12:20725060-20833202:+|nuORF;ENSG00000172572|ENST00000359062|PDE3A;PDE3A|p.M679V|1|0.28|ENSG00000172572|chr12:20637133-20637133|A/G|missense_variant;PDE3A|p.D680N|1|0.29|ENSG00000172572|chr12:20637136-20637136|G/A|missense_variant	ENST00000544307.1_1_12:20725060-20833202:+|nuORF	ENST00000544307.1_1_12:20725060-20833202:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	475.1811218261719	2	474.791861	947.569169	-0.78492	-0.00037267	-0.16909	-8.0283E-05	-0.95401	-0.00045296	474.7907028686101	135.48	0.15208	135.48	135.39	135.54	0					4	2	2	0	0	0	0.60012	1	52220	52220		18.135	4.6271	1	372340			38854	7723	28495	28727	37860	37860					0.09328716596758113
PILCYLPNP	9	Unmodified	_PILCYLPNP_					0	0	0		CYP1A2|p.R243C|1|0.31|ENSG00000140505|chr15:74750465-74750465|C/T|missense_variant	CYP1A2|p.R243C|1|0.31|ENSG00000140505|chr15:74750465-74750465|C/T|missense_variant	CYP1A2|p.R243C|1|0.31|ENSG00000140505|chr15:74750465-74750465|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	1030.9107666015625	1	1029.54377	1028.53649	0.11433	0.00011771	0.69051	0.00071091	0.80485	0.00082862	1029.544702329145	92.67	0.35513	93.409	93.14	93.495	0.73902					10	6	2	0	0	0	0.72985	1	35144	35144		4.3292	0.73274	1	3139400			38855	696	28496	28728	37861	37861					0.02336186202251156
PILCYLPNP	9	Unmodified	_PILCYLPNP_					0	0	0		CYP1A2|p.R243C|1|0.31|ENSG00000140505|chr15:74750465-74750465|C/T|missense_variant	CYP1A2|p.R243C|1|0.31|ENSG00000140505|chr15:74750465-74750465|C/T|missense_variant	CYP1A2|p.R243C|1|0.31|ENSG00000140505|chr15:74750465-74750465|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		1	1029.54377	1028.53649	0.26496	0.00027279	0.017285	1.7796E-05	0.28225	0.00029059	1029.543615675468	93.474	0.40771	93.474	93.279	93.686	0	0.03263	-0.00015121	NaN	4.3292	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1754600			38856	696	28496	28728							0.02336186202251156
PILGPQMFQ	9	Unmodified	_PILGPQMFQ_					0	0	0		ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11	ENSG00000086200|ENST00000325324|IPO11	ENSG00000086200|ENST00000325324|IPO11	MSMS	A375_MHC_IP_R2	2	515.6873779296875	2	515.773145	1029.53174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.295	1	97.046	96.546	97.546	0.75045								0	0	0	0.15131	1	36563	36563		19.439	2.4967	1				38857	1831	28497	28729	37862	37862					0.018153020594809277
PILKPPIPE	9	Unmodified	_PILKPPIPE_					0	0	0			REV__ENSG00000204569|ENST00000376511|PPP1R10	REV__ENSG00000204569|ENST00000376511|PPP1R10	MULTI-SECPEP	A375_MHC_IP_R2	2	501.6903381347656	2	502.312961	1002.61137	-0.42606	-0.00021402	-0.63287	-0.0003179	-1.0589	-0.00053192	502.3125906892557	114.66	0.45894	115.35	114.96	115.42	0.68999					12	8	2	0	0	0	0.81254	1	43111	43111		0.52476	0	1	1749100	+		38858	22525	28498	28730	37863	37863					0.11016692005125606
PILPYDKHPW	10	Unmodified	_PILPYDKHPW_					0	0	0			REV__ENSG00000121691|ENST00000241052|CAT	REV__ENSG00000121691|ENST00000241052|CAT	MULTI-MSMS	A375_MHC_IP_R1	1	633.7374877929688	2	633.337498	1264.66044	-0.6703	-0.00042453	0.235	0.00014883	-0.43531	-0.0002757	633.3382845747257	128.82	0.81468	128.82	128.43	129.25	0					30	15	3	0	0	0	0.71245	1	49579	49579		6.7232	0	1	4901400	+		38859	18170	28499	28731	37864	37864					0.038699802940755035
PILVLRGLDGF	11	Unmodified	_PILVLRGLDGF_					0	0	0		ENSG00000186765|ENST00000417245|FSCN2;nc|ENSG00000186765|O14926-2|FSCN2	ENSG00000186765|ENST00000417245|FSCN2	ENSG00000186765|ENST00000417245|FSCN2	MSMS	A375_MHC_IP_R2	2	400.6200866699219	3	400.576408	1198.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.156	1	35.919	35.419	36.419	0.76338								0	0	0	0.16147	1	12730	12730		11.065	0	1				38860	8773	28500	28732	37865	37865					0.1159883984521457
PIMRDFLGM	9	Unmodified	_PIMRDFLGM_					0	0	0			REV__DNAH7|p.V1790I|1|0.29|ENSG00000118997|chr2:195888296-195888296|C/T|missense_variant	REV__DNAH7|p.V1790I|1|0.29|ENSG00000118997|chr2:195888296-195888296|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	540.2063598632812	2	540.272455	1078.53036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.067	1	56.817	56.317	57.317	0.75015								0	0	0	0.1499	1	21187	21187		21.747	2.3847	1		+		38861	16017	28501	28733	37866	37866					-0.005766553009152631
PINYVRYYWVF	11	Unmodified	_PINYVRYYWVF_					0	0	0			REV__CYBB|p.D34N|1|0.38|ENSG00000165168|chrX:37782142-37782142|G/A|missense_variant	REV__CYBB|p.D34N|1|0.38|ENSG00000165168|chrX:37782142-37782142|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	760.4007568359375	2	760.390262	1518.76597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.64	1	124.97	124.47	125.47	0.32969								0	0	0	0.16249	1	48269	48269		5.7319	0.83484	1		+		38862	15944	28502	28734	37867	37867					0.02733896419681514
PIPEHLGSL	9	Unmodified	_PIPEHLGSL_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	A375_MHC_IP_R2	2	481.6784973144531	2	481.768917	961.523281	-0.46195	-0.00022256	-0.12098	-5.8283E-05	-0.58293	-0.00028084	481.7688962609519	68.575	0.91179	69.31	68.816	69.728	0.73511					29	17	2	0	0	0	0.35581	1	26073	26073		26.884	0	1	1425800			38863	8855	28503	28735	37868	37868					0.04098071414523474
PIPEQYQLLYR	11	Unmodified	_PIPEQYQLLYR_					0	0	0			REV__ENST00000557929.5_1_15:78834269-78838932:+|nuORF	REV__ENST00000557929.5_1_15:78834269-78838932:+|nuORF	MSMS	A375_MHC_IP_R1	1	710.326171875	2	710.385177	1418.7558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.02	1	143.02	142.52	143.52	0								0	0	0	0.16249	1	54872	54872		5.7319	2.4505	1		+		38864	16341	28504	28736	37869	37869					0.06317288694458512
PIPLINRLEKH	11	Unmodified	_PIPLINRLEKH_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MSMS	A375_MHC_IP_R1	1	665.2207641601562	2	665.403704	1328.79285	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.58	1	119.58	119.08	120.08	0								0	0	0	0.16213	1	44211	44211		7.609	2.3121	1				38865	7831	28505	28737	37870	37870					0.1416100503090547
PIPLINRLEKH	11	Unmodified	_PIPLINRLEKH_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MSMS	A375_MHC_IP_R1	1	665.6780395507812	2	665.403704	1328.79285	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.54	1	120.54	120.04	121.04	0								0	0	0	0.16191	1	44667	44667		8.7454	0.58988	1				38866	7831	28505	28737	37871	37871					0.1416100503090547
PIPVFFTLRRR	11	Unmodified	_PIPVFFTLRRR_					0	0	0			REV__ENST00000476955.5_1_22:38245435-38266306:+|nuORF	REV__ENST00000476955.5_1_22:38245435-38266306:+|nuORF	MSMS	A375_MHC_IP_R2	2	701.6814575195312	2	701.427513	1400.84047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.49	1	144.51	144.01	145.01	0.024414								0	0	0	0.16353	1	56437	56437		0.35063	0	1		+		38867	25192	28506	28738	37872	37872					0.15608704021724407
PIPVRSTY	8	Unmodified	_PIPVRSTY_					0	0	0		ENST00000504750.5_1_4:190947571-190948256:-|nuORF	ENST00000504750.5_1_4:190947571-190948256:-|nuORF	ENST00000504750.5_1_4:190947571-190948256:-|nuORF	MSMS	A375_MHC_IP_R2	2	466.6891784667969	2	466.763635	931.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.132	1	55.882	55.382	56.382	0.75075								0	0	0	0.16876	1	20821	20821		20.871	2.7362	1				38868	12827	28507	28739	37873	37873					0.04422088760099996
PIQLKTLKRID	11	Unmodified	_PIQLKTLKRID_					0	0	0			REV__ENST00000412878.2_1_10:53079965-53080385:+|nuORF	REV__ENST00000412878.2_1_10:53079965-53080385:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	442.681640625	3	442.281883	1323.82382	-0.081083	-3.5862E-05	0.038478	1.7018E-05	-0.042606	-1.8844E-05	442.28183412336216	61.661	0.56115	61.661	61.382	61.943	0					31	10	4	0	0	0	0.73354	1	22224	22224		5.5233	0	1	19810000	+		38869	24490	28508	28740	37874	37874					0.17486158345150216
PIQLKTLKRID	11	Unmodified	_PIQLKTLKRID_					0	0	0			REV__ENST00000412878.2_1_10:53079965-53080385:+|nuORF	REV__ENST00000412878.2_1_10:53079965-53080385:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	442.281883	1323.82382	-0.081083	-3.5862E-05	0.038478	1.7018E-05	-0.042606	-1.8844E-05	442.28183412336216	61.661	0.56115	61.661	61.382	61.943	0	0.1063	-7.7221E-05	NaN	5.5233	31	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19810000	+		38870	24490	28508	28740							0.17486158345150216
PIQNVWKKWY	10	Unmodified	_PIQNVWKKWY_					0	0	0			REV__ENSG00000197653|ENST00000673944|DNAH10	REV__ENSG00000197653|ENST00000673944|DNAH10	MSMS	A375_MHC_IP_R1	1	681.6278076171875	2	681.371872	1360.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.72	1	106.72	106.22	107.22	0								0	0	0	0.15531	1	39169	39169		3.5965	0	1		+		38871	22307	28509	28741	37875	37875					0.06325644593789548
PIQPPLKVN	9	Unmodified	_PIQPPLKVN_					0	0	0			REV__ENSG00000172671|ENST00000344646|ZFAND4	REV__ENSG00000172671|ENST00000344646|ZFAND4	MSMS	A375_MHC_IP_R2	2	503.5071105957031	2	503.30821	1004.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.69	1	129.91	129.41	130.41	0.2142								0	0	0	0.1499	1	50967	50967		21.747	4.8044	1		+		38872	21162	28510	28742	37876	37876					0.09974923719607887
PISESVLARLS	11	Unmodified	_PISESVLARLS_					0	0	0		ENSG00000274391|ENST00000618007|TPTE	ENSG00000274391|ENST00000618007|TPTE	ENSG00000274391|ENST00000618007|TPTE	MULTI-MSMS	A375_MHC_IP_R1	1	586.7374877929688	2	586.337695	1170.66084	-0.6201	-0.00036359	-0.058538	-3.4323E-05	-0.67863	-0.00039791	586.3374691483135	141.78	1.585	141.78	140.7	142.29	0					55	30	2	0	0	0	0.73016	1	54232	54232		8.7454	3.0136	1	2775900			38873	10002	28511	28743	37877	37877					0.08233355223296712
PISESVLARLS	11	Unmodified	_PISESVLARLS_					0	0	0		ENSG00000274391|ENST00000618007|TPTE	ENSG00000274391|ENST00000618007|TPTE	ENSG00000274391|ENST00000618007|TPTE	MULTI-MSMS	A375_MHC_IP_R2	2	586.7374877929688	2	586.337695	1170.66084	-0.34563	-0.00020266	-0.034987	-2.0514E-05	-0.38062	-0.00022317	586.3375289947303	141.8	1.5864	141.83	140.74	142.33	0.030731					53	30	2	0	0	0	0.73016	1	55300	55300		8.7454	2.5396	1	2270200			38874	10002	28511	28743	37878	37878					0.08233355223296712
PISIDSRR	8	Unmodified	_PISIDSRR_					0	0	0			REV__ENST00000408945.4_1_18:61616539-61620690:+|nuORF	REV__ENST00000408945.4_1_18:61616539-61620690:+|nuORF	MSMS	A375_MHC_IP_R2	2	472.1788024902344	2	472.269616	942.524678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.59	1	117.25	116.75	117.75	0.65962								0	0	0	0.16876	1	44069	44069		34.187	0	1		+		38875	24457	28512	28744	37879	37879					0.051117055032818826
PISKHLPILEE	11	Unmodified	_PISKHLPILEE_					0	0	0			REV__ENSG00000153922|ENST00000614616|CHD1	REV__ENSG00000153922|ENST00000614616|CHD1	MSMS	A375_MHC_IP_R1	1	638.6246337890625	2	638.368995	1274.72344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.28	1	143.28	142.78	143.78	0								0	0	0	0.16297	1	54967	54967		3.2813	0.28607	1		+		38876	19855	28513	28745	37880	37880					0.09706501291475433
PITALFHTH	9	Unmodified	_PITALFHTH_					0	0	0		ENSG00000126106|ENST00000372237|TMEM53;nc|ENSG00000126106|Q6P2H8-2|TMEM53	ENSG00000126106|ENST00000372237|TMEM53	ENSG00000126106|ENST00000372237|TMEM53	MULTI-MSMS	A375_MHC_IP_R1	1	1036.9197998046875	1	1036.55744	1035.55016	0.21327	0.00022106	-1.2988	-0.0013463	-1.0856	-0.0011253	1036.555800356043	102.41	0.605	102.41	102.1	102.71	0					22	11	3	0	0	0	0.5339	1	37550	37550		18.135	5.6034	1	4500900			38877	4025	28514	28746	37881	37881					0.03381180025712638
PITALFHTH	9	Unmodified	_PITALFHTH_					0	0	0		ENSG00000126106|ENST00000372237|TMEM53;nc|ENSG00000126106|Q6P2H8-2|TMEM53	ENSG00000126106|ENST00000372237|TMEM53	ENSG00000126106|ENST00000372237|TMEM53	MULTI-MATCH	A375_MHC_IP_R2	2		1	1036.55744	1035.55016	0.12284	0.00012733	-1.4314	-0.0014838	-1.3086	-0.0013564	1036.5558457850982	101.61	0.50797	102.37	102.06	102.57	0.76428	-0.021679	-9.881E-05	NaN	18.135	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3952200			38878	4025	28514	28746							0.03381180025712638
PITFLTIQLC	10	Unmodified	_PITFLTIQLC_					0	0	0			REV__ENST00000522653.5_1_5:133481849-133482209:+|nuORF	REV__ENST00000522653.5_1_5:133481849-133482209:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	574.2183227539062	2	574.822835	1147.63112	-0.16422	-9.4399E-05	-2.3432	-0.0013469	-2.5074	-0.0014413	574.8212173395482	125.96	0.30375	126.25	126.02	126.33	0.2951					7	5	2	0	0	0	0.85226	1	49232	49232		20.454	0	1	9508400	+		38879	25733	28515	28747	37882	37882					0.063206999536078
PIVDQLKSKN	10	Unmodified	_PIVDQLKSKN_					0	0	0			REV__ENST00000497138.5_1_20:56807969-56820980:-|nuORF	REV__ENST00000497138.5_1_20:56807969-56820980:-|nuORF	MSMS	A375_MHC_IP_R2	2	571.2581787109375	2	571.332413	1140.65027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.33	1	126.62	126.12	127.12	0.2951								0	0	0	0.15332	1	49414	49414		10.074	1.3285	1		+		38880	25425	28516	28748	37883	37883					0.08557372568884603
PIVESFSDY	9	Unmodified	_PIVESFSDY_					0	0	0		ENST00000513637.1_1_5:43495177-43495438:-|nuORF	ENST00000513637.1_1_5:43495177-43495438:-|nuORF	ENST00000513637.1_1_5:43495177-43495438:-|nuORF	MSMS	A375_MHC_IP_R1	1	528.762451171875	2	528.747847	1055.48114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.88	1	32.88	32.38	33.38	0								0	0	0	0.15486	1	10667	10667		13.508	0	1				38881	12934	28517	28749	37884	37884					-0.04437948784516266
PIVLALPH	8	Unmodified	_PIVLALPH_					0	0	0		nc|ENSG00000189308|Q6MZP7-2|LIN54;ENSG00000189308|ENST00000340417|LIN54;nc|ENSG00000189308|Q6MZP7-5|LIN54	nc|ENSG00000189308|Q6MZP7-2|LIN54	nc|ENSG00000189308|Q6MZP7-2|LIN54	MULTI-SECPEP	A375_MHC_IP_R2	2	859.1867065429688	1	859.54	858.532724	-0.60982	-0.00052417	-2.4578	-0.0021126	-3.0676	-0.0026368	859.5399393235397	126.82	0.15184	127.08	126.96	127.11	0.26593					4	2	2	0	0	0	0.972	1	49633	49633		11.114	0	1	11337000			38882	8977	28518	28750	37885	37885					0.09779884490706081
PIVPALTTV	9	Unmodified	_PIVPALTTV_					0	0	0		nc|ENSG00000055950|Q8N983|MRPL43;ENST00000370242.8_1_10:102739012-102743752:-|nuORF	nc|ENSG00000055950|Q8N983|MRPL43	nc|ENSG00000055950|Q8N983|MRPL43	MULTI-SECPEP	A375_MHC_IP_R2	2	909.9136352539062	1	910.560795	909.553519	-0.37171	-0.00033846	0.40647	0.00037012	0.034761	3.1652E-05	910.5610987109739	108.13	1.4305	108.89	108.4	109.84	0.75436					79	27	4	0	0	0	0.60012	1	41132	41132		24.674	1.5255	1	91093000			38883	14468	28519	28751	37886	37886					0.09512430079689693
PIWWFWKLRHR	11	Unmodified	_PIWWFWKLRHR_					0	0	0		ENST00000460045.1_1_7:128034815-128035199:-|nuORF	ENST00000460045.1_1_7:128034815-128035199:-|nuORF	ENST00000460045.1_1_7:128034815-128035199:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	542.7050170898438	3	542.305245	1623.89391	-0.58577	-0.00031767	0.19005	0.00010306	-0.39573	-0.0002146	542.3053093515691	46.229	0.75792	46.229	45.941	46.699	0					48	14	5	0	0	0	1.0014	1	16245	16245		0.45452	0.35968	1	23091000			38884	12162	28520	28752	37887	37887					0.10691501524229352
PIWWFWKLRHR	11	Unmodified	_PIWWFWKLRHR_					0	0	0		ENST00000460045.1_1_7:128034815-128035199:-|nuORF	ENST00000460045.1_1_7:128034815-128035199:-|nuORF	ENST00000460045.1_1_7:128034815-128035199:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	542.704833984375	3	542.305245	1623.89391	-0.86714	-0.00047026	0.41738	0.00022635	-0.44976	-0.00024391	542.3055014485316	45.461	0.60499	46.226	45.947	46.552	0.76518					39	11	5	0	0	0	1.0012	1	16957	16957		1.2148	0.76031	1	22762000			38885	12162	28520	28752	37888	37888					0.10691501524229352
PIWYRCRRPRH	11	Unmodified	_PIWYRCRRPRH_					0	0	0		ENSG00000183695|ENST00000329773|MRGPRX2	ENSG00000183695|ENST00000329773|MRGPRX2	ENSG00000183695|ENST00000329773|MRGPRX2	MSMS	A375_MHC_IP_R2	2	770.46728515625	2	770.414946	1538.81534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.03	1	112.75	112.25	113.25	0.72458								0	0	0	0.16334	1	42237	42237		1.3295	0	1				38886	8520	28521	28753	37889	37889					0.06748325947501144
PIYTIFFRIYY	11	Unmodified	_PIYTIFFRIYY_					0	0	0			REV__nc|ENSG00000134824|O95864-4|FADS2	REV__nc|ENSG00000134824|O95864-4|FADS2	MSMS	A375_MHC_IP_R1	1	748.5220947265625	2	748.402838	1494.79112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.21	1	110.21	109.71	110.71	0								0	0	0	0.16297	1	40412	40412		3.2813	0.28607	1		+		38887	18805	28522	28754	37890	37890					0.06351951222291063
PKAKRKDPHV	10	Unmodified	_PKAKRKDPHV_					0	0	0		ENST00000536130.1_1_12:123718068-123718410:+|nuORF	ENST00000536130.1_1_12:123718068-123718410:+|nuORF	ENST00000536130.1_1_12:123718068-123718410:+|nuORF	MSMS	A375_MHC_IP_R2	2	392.6287536621094	3	392.571768	1174.69348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.914	1	19.517	19.017	20.017	0.60308								0	0	0	0.15547	1	5650	5650		3.0723	0.33707	1				38888	13236	28523	28755	37891	37891					0.11311607136781276
PKALARPLPP	10	Unmodified	_PKALARPLPP_					0	0	0			REV__DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant	REV__DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	353.9172668457031	3	353.89396	1058.66005	-0.08789	-3.1104E-05	-0.10952	-3.8759E-05	-0.19741	-6.9863E-05	353.8938816598435	24.882	0.35534	24.882	24.749	25.104	0					10	6	3	0	0	0	0.72358	1	7113	7113		1.7423	0.14999	1	4543200	+		38889	15991	28524	28756	37892	37892					0.13306605364869029
PKCIISLEVM	10	Unmodified	_PKCIISLEVM_					0	0	0		nc|ENSG00000165194|Q8TAB3-3|PCDH19;nc|ENSG00000165194|Q8TAB3-2|PCDH19;ENSG00000165194|ENST00000373034|PCDH19	nc|ENSG00000165194|Q8TAB3-3|PCDH19	nc|ENSG00000165194|Q8TAB3-3|PCDH19	MULTI-MSMS	A375_MHC_IP_R2	2	378.6083679199219	3	378.208339	1131.60319	-0.35826	-0.0001355	0.29241	0.00011059	-0.065846	-2.4904E-05	378.20841382290274	36.738	0.9641	37.509	37.106	38.07	0.7709					34	18	4	0	0	0	0.70442	1	13411	13411		10.315	1.8709	1	4262500			38890	6925	28525	28757	37893	37893					0.04265053701851684
PKDELMEKY	9	Unmodified	_PKDELMEKY_					0	0	0			REV__ENSG00000156886|ENST00000389202|ITGAD	REV__ENSG00000156886|ENST00000389202|ITGAD	MULTI-SECPEP	A375_MHC_IP_R1	1	385.2583923339844	3	384.858363	1151.55326	0.27463	0.00010569	0.76659	0.00029503	1.0412	0.00040072	384.8587163717677	25.19	0.96382	25.19	24.953	25.917	0					37	18	3	0	0	0	0.5212	1	7305	7305		19.626	5.4078	1	17524000	+		38891	19999	28526	28758	37894	37894					-0.016453577024549304
PKDELMEKY	9	Unmodified	_PKDELMEKY_					0	0	0			REV__ENSG00000156886|ENST00000389202|ITGAD	REV__ENSG00000156886|ENST00000389202|ITGAD	MULTI-SECPEP	A375_MHC_IP_R2	2	385.2579040527344	3	384.858363	1151.55326	-0.49633	-0.00019102	1.4658	0.00056413	0.96949	0.00037312	384.8589019258794	24.594	0.91641	25.237	25.06	25.976	0.64368					30	17	2	0	0	0	0.41434	1	8110	8110		19.626	8.1081	1	14957000	+		38892	19999	28526	28758	37895	37895					-0.016453577024549304
PKEAFRQL	8	Unmodified	_PKEAFRQL_					0	0	0		ENSG00000175467|ENST00000312397|SART1;ENST00000529580.1_1_11:65745334-65746386:+|nuORF	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	A375_MHC_IP_R1	1	989.4765014648438	1	988.557441	987.550165	0.059033	5.8357E-05	0.86025	0.00085041	0.91928	0.00090877	988.5582242875065	125.1	0.25048	125.1	125	125.25	0					5	4	2	0	0	0	0.74945	1	47465	47465		20.454	4.6064	1	18156000			38893	7961	28527	28759	37896	37896					0.05589180025708629
PKEEFGMMGDH	11	Unmodified	_PKEEFGMMGDH_					0	0	0		ENSG00000135298|ENST00000370598|ADGRB3	ENSG00000135298|ENST00000370598|ADGRB3	ENSG00000135298|ENST00000370598|ADGRB3	MSMS	A375_MHC_IP_R2	2	639.2672119140625	2	639.268098	1276.52164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.4	1	122.77	122.27	123.27	0.3766								0	0	0	0.16258	1	46900	46900		5.2969	0	1				38894	4665	28528	28760	37897	37897					-0.10555673728049442
PKEEFVPSNH	10	Unmodified	_PKEEFVPSNH_					0	0	0		nc|ENSG00000119844|Q6ULP2-7|AFTPH;ENST00000498706.5_1_2:64778608-64806757:+|nuORF;nc|ENSG00000119844|Q6ULP2-8|AFTPH;nc|ENSG00000119844|Q6ULP2-6|AFTPH;ENSG00000119844|ENST00000409933|AFTPH;nc|ENSG00000119844|Q6ULP2-9|AFTPH	nc|ENSG00000119844|Q6ULP2-7|AFTPH	nc|ENSG00000119844|Q6ULP2-7|AFTPH	MSMS	A375_MHC_IP_R1	1	592.166748046875	2	592.290745	1182.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.81	1	117.81	117.31	118.31	0								0	0	0	0.15372	1	43307	43307		8.7454	0.58988	1				38895	3627	28529	28761	37898	37898					-0.017043638789800752
PKEGIHTRRHR	11	Unmodified	_PKEGIHTRRHR_					0	0	0			REV__ENSG00000180938|ENST00000319286|ZNF572	REV__ENSG00000180938|ENST00000319286|ZNF572	MSMS	A375_MHC_IP_R2	2	693.8955078125	2	693.8949	1385.77525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.54	1	122.91	122.41	123.41	0.3766								0	0	0	0.16232	1	46970	46970		6.6304	1.3335	1		+		38896	21630	28530	28762	37899	37899					0.09779102548600349
PKEGTHKRSH	10	Unmodified	_PKEGTHKRSH_					0	0	0			REV__nc|ENSG00000085274|Q9NPC7-3|MYNN	REV__nc|ENSG00000085274|Q9NPC7-3|MYNN	MSMS	A375_MHC_IP_R1	1	588.6552124023438	2	588.815253	1175.61595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.61	1	121.61	121.11	122.11	0								0	0	0	0.15391	1	45177	45177		8.1555	1.4324	1		+		38897	16832	28531	28763	37900	37900					0.0351696920060931
PKEIRDIMF	9	Unmodified	_PKEIRDIMF_					0	0	0		tr|U7SVT1|U7SVT1_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01329PE=4SV=1	tr|U7SVT1|U7SVT1_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01329PE=4SV=1	tr|U7SVT1|U7SVT1_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01329PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	575.209716796875	2	574.810259	1147.60597	-0.092117	-5.295E-05	-0.43846	-0.00025203	-0.53057	-0.00030498	574.8100304955597	84.709	0.91498	85.445	85.018	85.933	0.73601					38	17	4	0	0	0	0.53748	1	32151	32151		24.021	0	1	17758000			38898	29797	28532	28764	37901	37901					0.03806645151007615
PKEKNKLSHIH	11	Unmodified	_PKEKNKLSHIH_					0	0	0		DEFB115|p.D72N|2|0.26|ENSG00000215547|chr20:31259579-31259579|G/A|missense_variant	DEFB115|p.D72N|2|0.26|ENSG00000215547|chr20:31259579-31259579|G/A|missense_variant	DEFB115|p.D72N|2|0.26|ENSG00000215547|chr20:31259579-31259579|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	665.884765625	2	665.883136	1329.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.1	1	116.1	115.6	116.6	0								0	0	0	0.16213	1	42582	42582		7.609	1.8771	1				38899	732	28533	28765	37902	37902					0.10003243991423005
PKELIKMVTRH	11	Unmodified	_PKELIKMVTRH_					0	0	0		nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	MSMS	A375_MHC_IP_R2	2	676.4461059570312	2	676.397564	1350.78058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.86	1	117.52	117.02	118.02	0.65962								0	0	0	0.16258	1	44191	44191		5.2969	0.39987	1				38900	5927	28534	28766	37903	37903					0.1192164529618367
PKERLRRYLER	11	Unmodified	_PKERLRRYLER_					0	0	0			REV__ENST00000342222.6_1_8:42151073-42188494:+|nuORF	REV__ENST00000342222.6_1_8:42151073-42188494:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	506.36663818359375	3	505.967069	1514.87938	-0.53294	-0.00026965	0.60895	0.00030811	0.076005	3.8456E-05	506.3018434183626	143.09	0.30209	143.12	142.99	143.29	0.030731					13	5	3	0	0	0	0.73925	1	55959	55959		0.08335	0.08335	1	1147500	+		38901	17318	28535	28767	37904	37904					0.14253384585458662
PKFDEVYARSY	11	Unmodified	_PKFDEVYARSY_					0	0	0		nc|ENSG00000168032|O75355-2|ENTPD3;ENSG00000168032|ENST00000301825|ENTPD3	nc|ENSG00000168032|O75355-2|ENTPD3	nc|ENSG00000168032|O75355-2|ENTPD3	MULTI-MSMS	A375_MHC_IP_R1	1	459.6506042480469	3	458.894465	1373.66157	-0.044774	-2.0546E-05	-0.042095	-1.9317E-05	-0.086868	-3.9863E-05	458.89443024929847	70.232	1.1731	70.232	69.832	71.005	0					68	22	4	0	0	0	0.73135	2	25677	25677;25688		3.8459	1.4111	1	34592000			38902	7256	28536	28768	37905;37906	37905					-0.010318501276742609
PKFEVIEKPQA	11	Unmodified	_PKFEVIEKPQA_					0	0	0		ENSG00000154723|ENST00000284971|ATP5PF;nc|ENSG00000154723|P18859-2|ATP5PF	ENSG00000154723|ENST00000284971|ATP5PF	ENSG00000154723|ENST00000284971|ATP5PF	MULTI-MSMS	A375_MHC_IP_R1	1	429.6429443359375	3	429.243206	1284.70779	-0.25601	-0.00010989	0.25356	0.00010884	-0.0024419	-1.0482E-06	429.24331555801274	40.024	1.7769	40.024	39.794	41.571	0					83	34	5	0	0	0	0.12785	3	13694	13694;14279;14320		65.172	32.654	1	114980000			38903	6102	28537	28769	37907;37908;37909	37907					0.07682214774422391
PKFEVIEKPQA	11	Unmodified	_PKFEVIEKPQA_					0	0	0		ENSG00000154723|ENST00000284971|ATP5PF;nc|ENSG00000154723|P18859-2|ATP5PF	ENSG00000154723|ENST00000284971|ATP5PF	ENSG00000154723|ENST00000284971|ATP5PF	MULTI-MSMS	A375_MHC_IP_R1	1	643.7606811523438	2	643.36117	1284.70779	-0.61498	-0.00039565	0.14785	9.5124E-05	-0.46712	-0.00030053	643.3611678109486	40.033	0.40899	40.033	39.845	40.254	0					18	7	3	0	0	0	0.020537	1	13732	13732		108.77	75.871	1	7053500			38904	6102	28537	28769	37910	37910					0.07682214774422391
PKFEVIEKPQA	11	Unmodified	_PKFEVIEKPQA_					0	0	0		ENSG00000154723|ENST00000284971|ATP5PF;nc|ENSG00000154723|P18859-2|ATP5PF	ENSG00000154723|ENST00000284971|ATP5PF	ENSG00000154723|ENST00000284971|ATP5PF	MULTI-MSMS	A375_MHC_IP_R1	1	429.6329650878906	3	429.243206	1284.70779	-0.33506	-0.00014382	0.42056	0.00018052	0.085502	3.6701E-05	429.57788391573854	41.878	0.61175	41.878	41.521	42.132	0					15	11	2	0	0	0	0.73235	1	14500	14500		6.6599	6.6599	1	1203600			38905	6102	28537	28769	37911	37911					0.07682214774422391
PKFEVIEKPQA	11	Unmodified	_PKFEVIEKPQA_					0	0	0		ENSG00000154723|ENST00000284971|ATP5PF;nc|ENSG00000154723|P18859-2|ATP5PF	ENSG00000154723|ENST00000284971|ATP5PF	ENSG00000154723|ENST00000284971|ATP5PF	MULTI-MSMS	A375_MHC_IP_R2	2	429.64300537109375	3	429.243206	1284.70779	-0.32211	-0.00013826	-0.12713	-5.457E-05	-0.44924	-0.00019283	429.24314098794474	39.267	2.0345	40.042	39.708	41.743	0.77451					100	39	5	0	0	0	0.067682	1	14444	14444		75.986	28.262	1	126490000			38906	6102	28537	28769	37912	37912					0.07682214774422391
PKFEVIEKPQA	11	Unmodified	_PKFEVIEKPQA_					0	0	0		ENSG00000154723|ENST00000284971|ATP5PF;nc|ENSG00000154723|P18859-2|ATP5PF	ENSG00000154723|ENST00000284971|ATP5PF	ENSG00000154723|ENST00000284971|ATP5PF	MULTI-MSMS	A375_MHC_IP_R2	2	643.7603149414062	2	643.36117	1284.70779	-0.8241	-0.0005302	-0.12684	-8.1604E-05	-0.95094	-0.0006118	643.3610688080062	39.294	0.45743	40.068	39.812	40.269	0.77451					19	8	3	0	0	0	0.0069214	1	14485	14485		117.8	78.588	1	6282500			38907	6102	28537	28769	37913	37913					0.07682214774422391
PKGDKKER	8	Unmodified	_PKGDKKER_					0	0	0			REV__ENSG00000146007|ENST00000274712|ZMAT2	REV__ENSG00000146007|ENST00000274712|ZMAT2	MULTI-MSMS	A375_MHC_IP_R2	2	479.6485595703125	2	479.277441	956.540328	-0.44288	-0.00021226	0.18313	8.7771E-05	-0.25974	-0.00012449	479.27740587608423	109.27	5.8121	110.01	107.38	113.19	0.74683					289	113	4	0	0	0	0.77804	1	40880	40880		2.0598	0	1	18458000	+		38908	19512	28538	28770	37914	37914					0.060319920203255606
PKGGMKLF	8	Unmodified	_PKGGMKLF_					0	0	0		tr|U7SPC3|U7SPC3_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01811PE=3SV=1	tr|U7SPC3|U7SPC3_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01811PE=3SV=1	tr|U7SPC3|U7SPC3_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01811PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	439.6525573730469	2	439.251849	876.489145	-0.33676	-0.00014792	1.6147	0.00070925	1.2779	0.00056133	439.25249675603703	127.4	0.50744	127.66	127.41	127.92	0.26592					18	9	3	0	0	0	0.77797	1	49957	49957		2.3027	0	1	13428000			38909	29579	28539	28771	37915	37915					0.04595951721910296
PKGGRGAR	8	Unmodified	_PKGGRGAR_					0	0	0		ENST00000575531.5_1_16:4407102-4412712:-|nuORF;ENST00000575714.5_1_16:4408319-4455566:-|nuORF;nc|ENSG00000262246|P57737-2|CORO7;nc|ENSG00000262246|P57737-4|CORO7;ENSG00000262246|ENST00000251166|CORO7;nc|ENSG00000262246|P57737-3|CORO7	ENST00000575531.5_1_16:4407102-4412712:-|nuORF	ENST00000575531.5_1_16:4407102-4412712:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	400.1387634277344	2	399.738286	797.462019	-0.15302	-6.1169E-05	0.70353	0.00028123	0.55051	0.00022006	399.7384405640301	97.253	0.91052	97.253	96.529	97.44	0					26	17	2	0	0	0	0.77797	1	35660	35660		2.3027	0	1	859350			38910	9944	28540	28772	37916	37916					0.055186042257560075
PKGGRGAR	8	Unmodified	_PKGGRGAR_					0	0	0		ENST00000575531.5_1_16:4407102-4412712:-|nuORF;ENST00000575714.5_1_16:4408319-4455566:-|nuORF;nc|ENSG00000262246|P57737-2|CORO7;nc|ENSG00000262246|P57737-4|CORO7;ENSG00000262246|ENST00000251166|CORO7;nc|ENSG00000262246|P57737-3|CORO7	ENST00000575531.5_1_16:4407102-4412712:-|nuORF	ENST00000575531.5_1_16:4407102-4412712:-|nuORF	MSMS	A375_MHC_IP_R2	2	400.1386413574219	2	399.738286	797.462019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.64	1	123.97	123.47	124.47	0.32969								0	0	0	0.16876	1	47602	47602		2.3027	0	1				38911	9944	28540	28772	37917	37917					0.055186042257560075
PKGGRQIN	8	Unmodified	_PKGGRQIN_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	A375_MHC_IP_R2	2	435.65106201171875	2	435.251226	868.487899	-0.23922	-0.00010412	0.039225	1.7073E-05	-0.19999	-8.7047E-05	435.2511563360184	104.48	6.2587	105.24	102.77	109.03	0.76308					258	122	3	0	0	0	0.77797	1	38996	38996		2.3027	0	1	16931000			38912	6654	28541	28773	37918	37918					0.04839453677379879
PKGGSARFLV	10	Unmodified	_PKGGSARFLV_					0	0	0			REV__ENST00000378161.5_1_1:5926431-5928130:-|nuORF	REV__ENST00000378161.5_1_1:5926431-5928130:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	516.703369140625	2	516.303458	1030.59236	-0.57548	-0.00029712	0.50908	0.00026284	-0.066404	-3.4284E-05	516.3036841883151	143.79	0.20206	143.82	143.69	143.89	0.024414					6	3	2	0	0	0	0.72014	1	56207	56207		3.2813	0.97858	1	2300800	+		38913	24175	28542	28774	37919	37919					0.07829155434069435
PKGGSHIR	8	Unmodified	_PKGGSHIR_					0	0	0			REV__nc|ENSG00000189190|Q6ZNG1|ZNF600	REV__nc|ENSG00000189190|Q6ZNG1|ZNF600	MULTI-MSMS	A375_MHC_IP_R1	1	426.6456604003906	2	426.245944	850.477334	-0.73626	-0.00031383	0.49902	0.0002127	-0.23725	-0.00010113	426.24607672221316	123.22	1.9158	123.22	122.93	124.85	0					72	37	3	0	0	0	0.77515	2	46737	46250;46737		12.532	3.9383	1	347120000	+		38914	22143	28543	28775	37920;37921	37921					0.0461147102294035
PKGGSHIR	8	Unmodified	_PKGGSHIR_					0	0	0			REV__nc|ENSG00000189190|Q6ZNG1|ZNF600	REV__nc|ENSG00000189190|Q6ZNG1|ZNF600	MULTI-MSMS	A375_MHC_IP_R1	1	426.6462097167969	2	426.245944	850.477334	0.30906	0.00013174	-0.21082	-8.9863E-05	0.098234	4.1872E-05	426.2458452511343	127.19	1.1635	127.19	126.56	127.72	0					30	22	2	0	0	0	0.7773	1	48665	48665		4.756	0.42677	1	18681000	+		38915	22143	28543	28775	37922	37922					0.0461147102294035
PKGGSHIR	8	Unmodified	_PKGGSHIR_					0	0	0			REV__nc|ENSG00000189190|Q6ZNG1|ZNF600	REV__nc|ENSG00000189190|Q6ZNG1|ZNF600	MULTI-SECPEP	A375_MHC_IP_R1	1	426.6456604003906	2	426.245944	850.477334	-0.73626	-0.00031383	0.49902	0.0002127	-0.23725	-0.00010113	426.24607672221316	123.22	1.9158	123.22	122.93	124.85	0					72	37	3	0	0	0	0.972	1	46737	46737		12.532	3.9383	1	347120000	+		38916	22143	28543	28775	37923	37923					0.0461147102294035
PKGGSHIR	8	Unmodified	_PKGGSHIR_					0	0	0			REV__nc|ENSG00000189190|Q6ZNG1|ZNF600	REV__nc|ENSG00000189190|Q6ZNG1|ZNF600	MULTI-MSMS	A375_MHC_IP_R2	2	426.645751953125	2	426.245944	850.477334	-0.17846	-7.6066E-05	0.12806	5.4585E-05	-0.050395	-2.1481E-05	426.24592989023455	122.77	2.2284	123.15	122.57	124.8	0.3766					84	43	3	0	0	0	0.77643	1	47667	47667		7.9102	3.1541	1	260100000	+		38917	22143	28543	28775	37924	37924					0.0461147102294035
PKGGSHIR	8	Unmodified	_PKGGSHIR_					0	0	0			REV__nc|ENSG00000189190|Q6ZNG1|ZNF600	REV__nc|ENSG00000189190|Q6ZNG1|ZNF600	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	426.245944	850.477334	0.30906	0.00013174	-0.21082	-8.9863E-05	0.098234	4.1872E-05	426.2458452511343	127.19	1.1635	127.19	126.56	127.72	0	0	0	NaN	4.756	30	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18681000	+		38918	22143	28543	28775							0.0461147102294035
PKGIHLGP	8	Unmodified	_PKGIHLGP_					0	0	0			REV__ENSG00000196177|ENST00000358776|ACADSB	REV__ENSG00000196177|ENST00000358776|ACADSB	MULTI-MSMS	A375_MHC_IP_R2	2	818.7357177734375	1	818.488299	817.481023	-0.61788	-0.00050573	0.71228	0.00058299	0.094403	7.7268E-05	818.4895117502492	113.73	0.39959	114.44	114.33	114.73	0.70985					11	7	2	0	0	0	0.77624	1	42869	42869		8.5933	0	1	2834500	+		38919	22167	28544	28776	37925	37925					0.06498140796804819
PKGKKDRE	8	Unmodified	_PKGKKDRE_					0	0	0		nc|ENSG00000198363|Q12797-4|ASPH;nc|ENSG00000198363|Q12797-3|ASPH	nc|ENSG00000198363|Q12797-4|ASPH	nc|ENSG00000198363|Q12797-4|ASPH	MULTI-MSMS	A375_MHC_IP_R1	1	479.6769714355469	2	479.277441	956.540328	-0.04758	-2.2804E-05	0.051625	2.4743E-05	0.0040458	1.9391E-06	479.27735550984244	114.71	5.1273	114.71	112.89	118.02	0					275	100	3	0	0	0	0.7773	1	42281	42281		4.756	4.756	1	60362000			38920	14850	28545	28777	37926	37926					0.06031992020314192
PKGKKDRE	8	Unmodified	_PKGKKDRE_					0	0	0		nc|ENSG00000198363|Q12797-4|ASPH;nc|ENSG00000198363|Q12797-3|ASPH	nc|ENSG00000198363|Q12797-4|ASPH	nc|ENSG00000198363|Q12797-4|ASPH	MULTI-MSMS	A375_MHC_IP_R2	2	479.67755126953125	2	479.277441	956.540328	-0.36367	-0.0001743	-0.0040912	-1.9608E-06	-0.36776	-0.00017626	479.2773251011022	115.33	5.995	116.02	113.03	119.03	0.68999					294	117	3	0	0	0	0.7773	1	42458	42458		4.756	0	1	60713000			38921	14850	28545	28777	37927	37927					0.06031992020314192
PKGKRGAR	8	Unmodified	_PKGKRGAR_					0	0	0			REV__ENST00000366185.2_2_X:53123411-53171229:+|nuORF	REV__ENST00000366185.2_2_X:53123411-53171229:+|nuORF	MSMS	A375_MHC_IP_R1	1	435.2823181152344	2	435.275035	868.535518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.78	1	138.78	138.28	139.28	0								0	0	0	0.16876	1	53368	53368		0.69038	0	1		+		38922	23932	28546	28778	37928	37928					0.09599152668215538
PKGLCIVL	8	Unmodified	_PKGLCIVL_					0	0	0		ENST00000438828.3_3_2:203777481-203777724:+|nuORF	ENST00000438828.3_3_2:203777481-203777724:+|nuORF	ENST00000438828.3_3_2:203777481-203777724:+|nuORF	MSMS	A375_MHC_IP_R1	1	421.6598205566406	2	421.762049	841.509546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.01	1	118.01	117.51	118.51	0								0	0	0	0.16876	1	43390	43390		2.3027	1.5091	1				38923	11952	28547	28779	37929	37929					0.08245122381708825
PKGLFSKLK	9	Unmodified	_PKGLFSKLK_					0	0	0		nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1	nc|ENSG00000099995|Q15459-2|SF3A1	nc|ENSG00000099995|Q15459-2|SF3A1	MULTI-MSMS	A375_MHC_IP_R1	1	1018.8194580078125	1	1017.64553	1016.63825	0.38796	0.0003948	0.12096	0.00012309	0.50891	0.00051789	1017.6456185298116	117.38	0.81143	117.38	117.21	118.02	0					22	15	2	0	0	0	0.73415	2	43075	43075;43145		3.9444	0.66309	1	168890000			38924	2099	28548	28780	37930;37931	37930					0.1305980061632681
PKGLFSKLK	9	Unmodified	_PKGLFSKLK_					0	0	0		nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1	nc|ENSG00000099995|Q15459-2|SF3A1	nc|ENSG00000099995|Q15459-2|SF3A1	MULTI-MSMS	A375_MHC_IP_R2	2	1019.9072265625	1	1017.64553	1016.63825	0.19334	0.00019675	-0.94805	-0.00096478	-0.75471	-0.00076803	1017.6445150230044	116.23	0.61251	116.89	116.66	117.28	0.65962					25	11	3	0	0	0	0.70307	1	43963	43963		6.7232	0.51738	1	153240000			38925	2099	28548	28780	37932	37932					0.1305980061632681
PKGLQALRPP	10	Unmodified	_PKGLQALRPP_					0	0	0		nc|ENSG00000183248|Q9H6K5-2|PRR36;ENSG00000183248|ENST00000618550|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	MSMS	A375_MHC_IP_R1	1	538.7308959960938	2	538.832383	1075.65021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.07	1	142.07	141.57	142.57	0								0	0	0	0.15541	1	54514	54514		3.2813	1.2216	1				38926	8477	28549	28781	37933	37933					0.11541417359512707
PKGPGGAP	8	Unmodified	_PKGPGGAP_					0	0	0			REV__ENST00000261205.8_1_12:79258708-79371613:+|nuORF	REV__ENST00000261205.8_1_12:79258708-79371613:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	680.4283447265625	1	680.372601	679.365324	-0.9344	-0.00063574	-2.923	-0.0019887	-3.8574	-0.0026245	680.3702230742779	136.88	0.35927	136.88	136.77	137.13	0					9	6	2	0	0	0	0.77842	1	52725	52725		0.69038	0	1	1295500	+		38927	23182	28550	28782	37934	37934					0.012816169459483717
PKGQAVDRG	9	Unmodified	_PKGQAVDRG_					0	0	0			REV__ENST00000534398.1_1_8:144821624-144824052:+|nuORF	REV__ENST00000534398.1_1_8:144821624-144824052:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	464.65423583984375	2	464.253966	926.493378	0.1969	9.1411E-05	0.066172	3.0721E-05	0.26307	0.00012213	464.25383635097603	115.01	1.2167	115.01	114.67	115.89	0					29	23	2	0	0	0	0.73415	1	42213	42213		3.9444	1.0552	1	2512200	+		38928	25887	28551	28783	37935	37935					0.027191324691784757
PKGQKKKKI	9	Unmodified	_PKGQKKKKI_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1;ENST00000484567.5_1_16:88782015-88783673:-|nuORF	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	A375_MHC_IP_R1	1	1054.5634765625	1	1054.70953	1053.70225	-0.077336	-8.1567E-05	2.4503	0.0025843	2.373	0.0025028	1055.7121041587022	120.48	0.30186	120.48	120.2	120.5	0					6	5	2	0	0	0	0.75764	1	44610	44610		1.8442	1.0506	1	10495000			38929	2444	28552	28784	37936	37936					0.177545807732713
PKGQQGVR	8	Unmodified	_PKGQQGVR_					0	0	0		ENST00000427563.1_1_1:40768460-40770015:-|nuORF;ENST00000482722.5_1_1:40766856-40777859:-|nuORF;ENSG00000049089|ENST00000372748|COL9A2	ENST00000427563.1_1_1:40768460-40770015:-|nuORF	ENST00000427563.1_1_1:40768460-40770015:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	435.28240966796875	2	435.251226	868.487899	-0.041176	-1.7922E-05	0.2438	0.00010612	0.20263	8.8194E-05	435.2512280958006	104.22	6.8161	104.22	102.61	109.42	0					311	133	3	0	0	0	0.77797	1	37798	37798		2.3027	0	1	16984000			38930	1219	28553	28785	37937	37937					0.04839453677379879
PKGQQGVR	8	Unmodified	_PKGQQGVR_					0	0	0		ENST00000427563.1_1_1:40768460-40770015:-|nuORF;ENST00000482722.5_1_1:40766856-40777859:-|nuORF;ENSG00000049089|ENST00000372748|COL9A2	ENST00000427563.1_1_1:40768460-40770015:-|nuORF	ENST00000427563.1_1_1:40768460-40770015:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	435.65069580078125	2	435.251226	868.487899	-0.12885	-5.6081E-05	0.054031	2.3517E-05	-0.074816	-3.2564E-05	435.2511548815594	99.112	5.1421	99.871	97.877	103.02	0.75977					173	100	3	0	0	0	0.7773	1	37719	37719		4.756	0	1	4933900			38931	1219	28553	28785	37938	37938					0.04839453677379879
PKGRCGGP	8	Unmodified	_PKGRCGGP_					0	0	0		ENST00000215829.7_1_22:24951687-24951834:+|nuORF	ENST00000215829.7_1_22:24951687-24951834:+|nuORF	ENST00000215829.7_1_22:24951687-24951834:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	771.8713989257812	1	771.393019	770.385742	-0.82994	-0.00064021	0.88147	0.00067996	0.051526	3.9747E-05	771.3935259968456	143.27	0.50322	143.27	142.94	143.45	0					13	9	2	0	0	0	0.972	1	54852	54852		0.69038	0	1	3357600			38932	10086	28554	28786	37939	37939					-0.008635356658942328
PKGRLRRRRDR	11	Unmodified	_PKGRLRRRRDR_					0	0	0		ENST00000511161.5_1_6:41904922-42016364:-|nuORF;ENST00000513956.5_1_6:41904284-42016364:-|nuORF;ENST00000505672.5_1_6:41904922-42016364:-|nuORF	ENST00000511161.5_1_6:41904922-42016364:-|nuORF	ENST00000511161.5_1_6:41904922-42016364:-|nuORF	MSMS	A375_MHC_IP_R2	2	733.3798217773438	2	733.455991	1464.89743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.678	1	81.423	80.923	81.923	0.74474								0	0	0	0.16334	1	30632	30632		1.3295	0.9789	1				38933	12844	28555	28787	37940	37940					0.18357564350776556
PKGSKRSYKKG	11	Unmodified	_PKGSKRSYKKG_					0	0	0			REV__ENSG00000139351|ENST00000392924|SYCP3	REV__ENSG00000139351|ENST00000392924|SYCP3	MULTI-MSMS	A375_MHC_IP_R1	1	618.763916015625	2	618.364579	1234.7146	-0.71218	-0.00044039	-0.24752	-0.00015305	-0.9597	-0.00059344	618.3642600565045	139.64	0.36017	139.64	139.47	139.83	0					13	6	4	0	0	0	0.73502	1	53692	53692		4.897	1.9018	1	1068200	+		38934	19152	28556	28788	37941	37941					0.10663572445628233
PKGSKRSYKKG	11	Unmodified	_PKGSKRSYKKG_					0	0	0			REV__ENSG00000139351|ENST00000392924|SYCP3	REV__ENSG00000139351|ENST00000392924|SYCP3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	618.364579	1234.7146	-0.71218	-0.00044039	-0.24752	-0.00015305	-0.9597	-0.00059344	618.3642600565045	139.64	0.36017	139.64	139.47	139.83	0	-0.01655	0.00012333	NaN	4.897	13	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1068200	+		38935	19152	28556	28788							0.10663572445628233
PKGSKRSYKKG	11	Unmodified	_PKGSKRSYKKG_					0	0	0			REV__ENSG00000139351|ENST00000392924|SYCP3	REV__ENSG00000139351|ENST00000392924|SYCP3	MULTI-MATCH	A375_MHC_IP_R2	2		2	618.364579	1234.7146	-0.48506	-0.00029994	-0.54717	-0.00033835	-1.0322	-0.00063829	618.3642298331632	139.62	0.25204	139.68	139.6	139.85	0.059906	0.01655	-0.00024726	NaN	4.897	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	969230	+		38936	19152	28556	28788							0.10663572445628233
PKGSSKVKRRV	11	Unmodified	_PKGSSKVKRRV_					0	0	0		nc|ENSG00000184792|Q969R2-6|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2;nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2;nc|ENSG00000184792|Q969R2-5|OSBP2;nc|ENSG00000184792|Q969R2-4|OSBP2	nc|ENSG00000184792|Q969R2-6|OSBP2	nc|ENSG00000184792|Q969R2-6|OSBP2	MULTI-MSMS	A375_MHC_IP_R2	2	621.7924194335938	2	621.39367	1240.77279	-0.59058	-0.00036698	-0.74901	-0.00046543	-1.3396	-0.00083241	621.3929416399226	135.49	0.35472	135.63	135.51	135.86	0.13901					10	6	3	0	0	0	0.73459	1	53284	53284		4.5289	1.2476	1	2429700			38937	8609	28557	28789	37942	37942					0.16203254090919472
PKGSSKVKRRV	11	Unmodified	_PKGSSKVKRRV_					0	0	0		nc|ENSG00000184792|Q969R2-6|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2;nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2;nc|ENSG00000184792|Q969R2-5|OSBP2;nc|ENSG00000184792|Q969R2-4|OSBP2	nc|ENSG00000184792|Q969R2-6|OSBP2	nc|ENSG00000184792|Q969R2-6|OSBP2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	621.39367	1240.77279	-0.7269	-0.00045169	-1.1608	-0.00072133	-1.8877	-0.001173	621.392937379084	135.53	0.4068	135.53	135.44	135.84	0	-0.050279	-0.00015001	NaN	4.5289	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2580200			38938	8609	28557	28789							0.16203254090919472
PKGTSVTT	8	Unmodified	_PKGTSVTT_					0	0	0			REV__ENSG00000005339|ENST00000262367|CREBBP	REV__ENSG00000005339|ENST00000262367|CREBBP	MULTI-SECPEP	A375_MHC_IP_R2	2	790.8606567382812	1	790.430509	789.423233	-0.78557	-0.00062094	-0.515	-0.00040707	-1.3006	-0.001028	790.4298789634446	149.27	0.44952	149.29	149.11	149.56	0.01825					15	9	2	0	0	0	0.972	1	57967	57967		0.69038	0	1	290120	+		38939	16120	28558	28790	37943	37943					0.02009834080706696
PKIEFKELI	9	Unmodified	_PKIEFKELI_					0	0	0		AFM|p.F247I|1|0.32|ENSG00000079557|chr4:73488655-73488655|T/A|missense_variant;ENSG00000079557|ENST00000226355|AFM	AFM|p.F247I|1|0.32|ENSG00000079557|chr4:73488655-73488655|T/A|missense_variant	AFM|p.F247I|1|0.32|ENSG00000079557|chr4:73488655-73488655|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	372.9292297363281	3	372.893625	1115.65905	0.12668	4.7236E-05	0.2616	9.755E-05	0.38828	0.00014479	373.22862803718044	23.47	0.60697	24.1	23.878	24.485	0.63014					28	11	4	0	0	0	0.74768	1	7593	7593		2.7352	0.23671	1	4079200			38940	82	28559	28791	37944	37944					0.10584346205314432
PKIVKWDRDM	10	Oxidation (M)	_PKIVKWDRDM(Oxidation (M))_		PKIVKWDRDM(1)		PKIVKWDRDM(58)	0	0	1		ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-MSMS	A375_MHC_IP_R1	1	435.632080078125	3	435.232424	1302.67544	-0.41301	-0.00017976	0.46028	0.00020033	0.047267	2.0572E-05	435.2324463036926	26.001	0.91262	26.001	25.511	26.423	0					50	17	4	0	0	0	0.12684	1	7576	7576		57.885	47.357	1	10039000			38941	7105	28560	28792	37945	37945		360			0.03621104099738659
PKIVKWDRDM	10	Unmodified	_PKIVKWDRDM_					0	0	0		ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-MSMS	A375_MHC_IP_R1	1	430.3005676269531	3	429.900786	1286.68053	-0.20035	-8.6131E-05	0.13965	6.0034E-05	-0.060706	-2.6097E-05	429.90086219765976	34.278	0.50578	34.278	34.052	34.557	0					20	9	3	0	0	0	0.52681	1	11312	11312		26.346	17.37	1	5694200			38942	7105	28560	28793	37946	37946					0.04865407962370227
PKIVKWDRDM	10	Unmodified	_PKIVKWDRDM_					0	0	0		ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-MSMS	A375_MHC_IP_R2	2	430.3005065917969	3	429.900786	1286.68053	-0.55382	-0.00023809	0.13456	5.7846E-05	-0.41927	-0.00018024	429.900794346607	33.317	0.45708	34.069	33.891	34.348	0.75225					15	8	2	0	0	0	0.2149	1	11950	11950		47.724	47.724	1	11133000			38943	7105	28560	28793	37947	37947					0.04865407962370227
PKKAAAKKK	9	Unmodified	_PKKAAAKKK_					0	0	0		ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	MSMS	A375_MHC_IP_R1	1	485.31787109375	2	485.332019	968.649485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.181	1	83.181	82.681	83.681	0								0	0	0	0.15273	1	30433	30433		17.113	4.0704	1				38944	7285	28561	28794	37948	37948					0.16390622710457592
PKKAPAASTM	10	Unmodified	_PKKAPAASTM_					0	0	0			REV__nc|ENSG00000137221|Q5JTD0-3|TJAP1	REV__nc|ENSG00000137221|Q5JTD0-3|TJAP1	MULTI-MSMS	A375_MHC_IP_R1	1	501.69024658203125	2	501.276052	1000.53755	-0.10264	-5.1452E-05	-1.1706	-0.00058677	-1.2732	-0.00063822	501.2755964236228	48.096	0.75811	48.096	47.567	48.325	0					28	14	3	0	0	0	0.39599	1	16991	16991		34.402	1.616	1	14671000	+		38945	18994	28562	28795	37949	37949					0.037304005711462196
PKKAPAASTM	10	Unmodified	_PKKAPAASTM_					0	0	0			REV__nc|ENSG00000137221|Q5JTD0-3|TJAP1	REV__nc|ENSG00000137221|Q5JTD0-3|TJAP1	MULTI-MSMS	A375_MHC_IP_R2	2	501.69049072265625	2	501.276052	1000.53755	-0.41697	-0.00020902	-0.1561	-7.8248E-05	-0.57307	-0.00028727	501.2759841116363	47.235	0.81594	47.996	47.664	48.48	0.76128					33	15	4	0	0	0	0.27246	2	17727	17673;17727		41.84	1.8899	1	21079000	+		38946	18994	28562	28795	37950;37951	37951					0.037304005711462196
PKKAPAASTM	10	Unmodified	_PKKAPAASTM_					0	0	0			REV__nc|ENSG00000137221|Q5JTD0-3|TJAP1	REV__nc|ENSG00000137221|Q5JTD0-3|TJAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	501.6761169433594	2	501.276052	1000.53755	-0.41697	-0.00020902	-0.1561	-7.8248E-05	-0.57307	-0.00028727	501.2759841116363	47.235	0.81594	47.996	47.664	48.48	0.76128					33	15	4	0	0	0	0.6774	1	17673	17673		34.402	0	1	21079000	+		38947	18994	28562	28795	37952	37952					0.037304005711462196
PKKEKRLHRRW	11	Unmodified	_PKKEKRLHRRW_					0	0	0		OSBPL3|p.S272L|1|0.29|ENSG00000070882|chr7:24863255-24863255|G/A|missense_variant	OSBPL3|p.S272L|1|0.29|ENSG00000070882|chr7:24863255-24863255|G/A|missense_variant	OSBPL3|p.S272L|1|0.29|ENSG00000070882|chr7:24863255-24863255|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	767.8271484375	2	767.465493	1532.91643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.854	1	92.589	92.089	93.089	0.7345								0	0	0	0.16334	1	34933	34933		1.3295	0.92882	1				38948	15098	28563	28796	37953	37953					0.17129100921852114
PKKEKRLHRRW	11	Unmodified	_PKKEKRLHRRW_					0	0	0		OSBPL3|p.S272L|1|0.29|ENSG00000070882|chr7:24863255-24863255|G/A|missense_variant	OSBPL3|p.S272L|1|0.29|ENSG00000070882|chr7:24863255-24863255|G/A|missense_variant	OSBPL3|p.S272L|1|0.29|ENSG00000070882|chr7:24863255-24863255|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	767.0389404296875	2	767.465493	1532.91643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.57	1	131.76	131.26	132.26	0.18953								0	0	0	0.16337	1	51754	51754		1.1933	0.84271	1				38949	15098	28563	28796	37954	37954					0.17129100921852114
PKKEKRLHRRW	11	Unmodified	_PKKEKRLHRRW_					0	0	0		OSBPL3|p.S272L|1|0.29|ENSG00000070882|chr7:24863255-24863255|G/A|missense_variant	OSBPL3|p.S272L|1|0.29|ENSG00000070882|chr7:24863255-24863255|G/A|missense_variant	OSBPL3|p.S272L|1|0.29|ENSG00000070882|chr7:24863255-24863255|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	767.6762084960938	2	767.465493	1532.91643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.67	1	135.8	135.3	136.3	0.12881								0	0	0	0.16354	1	53320	53320		0.30703	0.30703	1				38950	15098	28563	28796	37955	37955					0.17129100921852114
PKKFNEQTL	9	Unmodified	_PKKFNEQTL_					0	0	0			REV__SGMS1|p.D43N|1|0.31|ENSG00000198964|chr10:50343988-50343988|C/T|missense_variant	REV__SGMS1|p.D43N|1|0.31|ENSG00000198964|chr10:50343988-50343988|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	368.587158203125	3	368.873113	1103.59751	0.15151	5.5887E-05	1.1185	0.00041259	1.27	0.00046847	368.87344968967443	19.493	0.53787	19.493	19.238	19.776	0					15	10	2	0	0	0	0.7713	1	4646	4646		8.4443	0	1	1484000	+		38951	27953	28564	28797	37956	37956					0.04985414506040797
PKKFTTQPI	9	Unmodified	_PKKFTTQPI_					0	0	0			REV__MDH1B|p.E500K|1|0.42|ENSG00000138400|chr2:206739623-206739623|C/T|missense_variant	REV__MDH1B|p.E500K|1|0.42|ENSG00000138400|chr2:206739623-206739623|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	530.961181640625	2	530.313492	1058.61243	-0.49977	-0.00026503	-0.50855	-0.00026969	-1.0083	-0.00053472	530.3133660328546	87.136	0.80843	87.869	87.56	88.368	0.733					32	15	3	0	0	0	0.67483	1	33025	33025		14.838	6.9281	1	6782600	+		38952	26997	28565	28798	37957	37957					0.08546906374044738
PKKHKKKKERK	11	Unmodified	_PKKHKKKKERK_					0	0	0		ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1;ENST00000473552.1_1_X:153991228-153994704:+|nuORF;ENST00000475423.1_1_X:153991228-153993352:+|nuORF	ENSG00000130826|ENST00000369550|DKC1	ENSG00000130826|ENST00000369550|DKC1	MULTI-SECPEP	A375_MHC_IP_R1	1	718.2142333984375	2	717.972619	1433.93069	-0.76444	-0.00054885	3.7443	0.0026883	2.9799	0.0021395	718.4767551514302	124.92	0.14983	124.92	124.85	125	0					4	2	2	0	0	0	1.001	1	47336	47336		1.1933	0	1	7356500			38953	4287	28566	28799	37958	37958					0.2310775335015478
PKKIKRLVKR	10	Unmodified	_PKKIKRLVKR_					0	0	0			REV__MAN1C1|p.E361K|1|0.23|ENSG00000117643|chr1:25763907-25763907|G/A|missense_variant	REV__MAN1C1|p.E361K|1|0.23|ENSG00000117643|chr1:25763907-25763907|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	633.4508666992188	2	633.448249	1264.88194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.15	1	121.15	120.65	121.65	0								0	0	0	0.15629	1	44970	44970		0.40072	0	1		+		38954	26981	28567	28800	37959	37959					0.2600988478106956
PKKKKKKKKK	10	Unmodified	_PKKKKKKKKK_					0	0	0		ENSG00000025293|ENST00000374012|PHF20;ENST00000357731.9_1_1:72748195-72748351:-|nuORF	ENSG00000025293|ENST00000374012|PHF20	ENSG00000025293|ENST00000374012|PHF20	MSMS	A375_MHC_IP_R1	1	634.67626953125	2	634.966274	1267.918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.726	1	82.726	82.226	83.226	0								0	0	0	0.15629	1	30258	30258		0.40072	0	1				38955	1087	28568	28801	37960	37960					0.2947534195791377
PKKKLFFF	8	Unmodified	_PKKKLFFF_					0	0	0			REV__ENST00000318522.9_1_2:42557683-42557836:+|nuORF	REV__ENST00000318522.9_1_2:42557683-42557836:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	527.736572265625	2	527.826038	1053.63752	-0.79474	-0.00041949	2.2198	0.0011716	1.425	0.00075216	527.8275056693136	30.832	0.35513	30.832	30.553	30.908	0					9	6	2	0	0	0	0.77702	1	9779	9779		5.7604	1.4312	1	619340	+		38956	23553	28569	28802	37961	37961					0.11285005967260986
PKKLIGKKPL	10	Unmodified	_PKKLIGKKPL_					0	0	0			REV__ENSG00000163545|ENST00000367157|NUAK2	REV__ENSG00000163545|ENST00000367157|NUAK2	MSMS	A375_MHC_IP_R2	2	561.406982421875	2	561.392077	1120.7696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.336	1	81.081	80.581	81.581	0.74474								0	0	0	0.15531	1	30497	30497		3.5965	0	1		+		38957	20377	28570	28803	37962	37962					0.21404610984222927
PKKRRKKKVL	10	Unmodified	_PKKRRKKKVL_					0	0	0		nc|ENSG00000146278|Q12796-2|PNRC1	nc|ENSG00000146278|Q12796-2|PNRC1	nc|ENSG00000146278|Q12796-2|PNRC1	MSMS	A375_MHC_IP_R2	2	640.965087890625	2	640.953698	1279.89284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.101	1	98.86	98.36	99.36	0.75977								0	0	0	0.15591	1	37223	37223		1.6526	0.17072	1				38958	14666	28571	28804	37963	37963					0.2640928715534301
PKKSKGRLL	9	Unmodified	_PKKSKGRLL_					0	0	0		ENST00000592220.1_1_19:34917242-34919163:-|nuORF	ENST00000592220.1_1_19:34917242-34919163:-|nuORF	ENST00000592220.1_1_19:34917242-34919163:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1027.0782470703125	1	1026.67823	1025.67095	-0.18067	-0.00018549	0.047242	4.8502E-05	-0.13343	-0.00013699	1026.6780734386728	147.7	0.2636	147.7	147.6	147.87	0					48	21	3	0	0	0	0.7724	1	56416	56416		0.52476	0	1	311790			38959	13811	28572	28805	37964	37964					0.15914007739183944
PKKSKGRLL	9	Unmodified	_PKKSKGRLL_					0	0	0		ENST00000592220.1_1_19:34917242-34919163:-|nuORF	ENST00000592220.1_1_19:34917242-34919163:-|nuORF	ENST00000592220.1_1_19:34917242-34919163:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	1026.67823	1025.67095	0.22596	0.00023199	-0.28529	-0.0002929	-0.059328	-6.0911E-05	1026.6777781262456	147.72	0.2294	147.74	147.64	147.87	0.019333	0.019551	-0.0001817	NaN	0.52476	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226170			38960	13811	28572	28805							0.15914007739183944
PKKVKGWLLP	10	Unmodified	_PKKVKGWLLP_					0	0	0		ENST00000474352.5_1_1:151337855-151338307:-|nuORF;ENST00000427977.6_1_1:151337413-151341586:-|nuORF;ENST00000455397.5_1_1:151337021-151341586:-|nuORF;ENST00000443708.5_1_1:151337021-151341586:-|nuORF;nc|ENSG00000143416|Q13228-2|SELENBP1;nc|ENSG00000143416|Q13228-3|SELENBP1;ENSG00000143416|ENST00000368868|SELENBP1;nc|ENSG00000143416|Q13228-4|SELENBP1	ENST00000474352.5_1_1:151337855-151338307:-|nuORF	ENST00000474352.5_1_1:151337855-151338307:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	389.6537780761719	3	389.253376	1164.7383	0.34995	0.00013622	0.77381	0.00030121	1.1238	0.00043742	389.2535226937025	49.92	1.4255	49.92	49.033	50.459	0					57	27	4	0	0	0	0.72321	1	17630	17630		1.9064	0.1641	1	34208000			38961	5387	28573	28806	37965	37965					0.16252037950130216
PKLGCENLDQN	11	Unmodified	_PKLGCENLDQN_					0	0	0			REV__nc|ENSG00000168743|Q6UXI9-2|NPNT	REV__nc|ENSG00000168743|Q6UXI9-2|NPNT	MULTI-MSMS	A375_MHC_IP_R1	1	411.2643737792969	3	410.864289	1229.57104	0.060188	2.4729E-05	-0.27372	-0.00011246	-0.21353	-8.7733E-05	410.86413345876497	60.436	0.45831	60.436	60.159	60.618	0					17	8	3	0	0	0	0.73135	1	21792	21792		3.8459	0.25885	1	1864600	+		38962	20881	28574	28807	37966	37966					-0.03456642447599734
PKLKGKKKHK	10	Unmodified	_PKLKGKKKHK_					0	0	0			REV__ENSG00000177409|ENST00000318238|SAMD9L	REV__ENSG00000177409|ENST00000318238|SAMD9L	MSMS	A375_MHC_IP_R1	1	596.3474731445312	2	596.40605	1190.79755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.98	1	101.98	101.48	102.48	0								0	0	0	0.15629	1	37475	37475		0.40072	0.093686	1		+		38963	21455	28575	28808	37967	37967					0.2097793396430916
PKLWKKQRVD	10	Unmodified	_PKLWKKQRVD_					0	0	0		nc|ENSG00000189157|Q6ZV65-2|FAM47E;nc|ENSG00000189157|Q6ZV65-1|FAM47E;ENSG00000189157|ENST00000424749|FAM47E	nc|ENSG00000189157|Q6ZV65-2|FAM47E	nc|ENSG00000189157|Q6ZV65-2|FAM47E	MULTI-MSMS	A375_MHC_IP_R1	1	649.789306640625	2	649.390596	1296.76664	-0.69388	-0.0004506	0.39652	0.0002575	-0.29736	-0.0001931	649.3909560541387	144.23	0.47365	144.23	143.98	144.46	0					17	11	2	0	0	0	0.72607	1	55315	55315		1.4819	0	1	291010			38964	8965	28576	28809	37968	37968					0.13012735859388158
PKPAVRQR	8	Unmodified	_PKPAVRQR_					0	0	0			REV__ENST00000526156.1_1_11:4107651-4113025:+|nuORF	REV__ENST00000526156.1_1_11:4107651-4113025:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	476.69573974609375	2	476.295968	950.577383	-0.8847	-0.00042138	0.22938	0.00010925	-0.65532	-0.00031213	476.2959649669178	143.66	0.24394	143.66	143.54	143.78	0					6	4	2	0	0	0	0.77842	1	55129	55129		0.69038	0	1	1809700	+		38965	20748	28577	28810	37969	37969					0.10011708356751114
PKPFQPQSCV	10	Unmodified	_PKPFQPQSCV_					0	0	0			REV__chr17:76559010-76561288|104|12.3|0.16|6.3|+|1|SNHG16,SNHG16|3	REV__chr17:76559010-76561288|104|12.3|0.16|6.3|+|1|SNHG16,SNHG16|3	MSMS	A375_MHC_IP_R2	2	377.4421081542969	3	377.526948	1129.55902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.679	1	39.454	38.954	39.954	0.77451								0	0	0	0.15417	1	14253	14253		3.8763	0.28927	1		+		38966	15725	28578	28811	37970	37970					-0.0005821440013278334
PKPGAPRLQP	10	Unmodified	_PKPGAPRLQP_					0	0	0		nc|ENSG00000142405|P59046-4|NLRP12;nc|ENSG00000142405|P59046-3|NLRP12;nc|ENSG00000142405|P59046-6|NLRP12;nc|ENSG00000142405|P59046-2|NLRP12;ENSG00000142405|ENST00000324134|NLRP12;nc|ENSG00000142405|P59046-7|NLRP12	nc|ENSG00000142405|P59046-4|NLRP12	nc|ENSG00000142405|P59046-4|NLRP12	MULTI-SECPEP	A375_MHC_IP_R1	1	354.9694519042969	3	354.213581	1059.61891	-0.24053	-8.52E-05	2.5443	0.00090124	2.3038	0.00081604	354.2141493899427	19.243	0.24093	19.243	19.23	19.471	0					6	5	2	0	0	0	0.91909	1	4815	4815		3.0723	0	1	14714000			38967	5306	28579	28812	37971	37971					0.091488443254093
PKPKQFRTR	9	Unmodified	_PKPKQFRTR_					0	0	0			REV__BDP1|p.P1911Rfs*9|1|0.11|ENSG00000145734|chr5:71524281-71524305|TCCTGAACCTGTTTCTGCTCAGATT/-|frameshift_variant;REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	MULTI-MSMS	A375_MHC_IP_R1	1	579.7485961914062	2	579.348732	1156.68291	-0.55244	-0.00032006	0.36697	0.0002126	-0.18547	-0.00010745	579.3491794438631	145.07	0.75755	145.07	144.77	145.53	0					64	39	3	0	0	0	0.75764	1	55640	55640		1.8442	0	1	631820	+		38968	15507;19489	28580	28813	37972	37972					0.11083624482353116
PKPKQFRTR	9	Unmodified	_PKPKQFRTR_					0	0	0			REV__BDP1|p.P1911Rfs*9|1|0.11|ENSG00000145734|chr5:71524281-71524305|TCCTGAACCTGTTTCTGCTCAGATT/-|frameshift_variant;REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	MULTI-MSMS	A375_MHC_IP_R2	2	579.7362060546875	2	579.348732	1156.68291	-0.064954	-3.7631E-05	-0.30087	-0.00017431	-0.36583	-0.00021194	579.3487876532412	145.2	0.74803	145.22	144.8	145.55	0.021408					70	44	3	0	0	0	0.75764	1	56662	56662		1.8442	0	1	446070	+		38969	15507;19489	28580	28813	37973	37973					0.11083624482353116
PKPSPAKKAPE	11	Unmodified	_PKPSPAKKAPE_					0	0	0		nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	MULTI-MSMS	A375_MHC_IP_R1	1	384.92767333984375	3	383.892396	1148.65536	0.15456	5.9335E-05	-0.097907	-3.7586E-05	0.056655	2.175E-05	383.89231953160197	24.473	0.65806	24.473	24.245	24.903	0					37	12	4	0	0	0	0.72964	1	7092	7092		9.2438	1.6348	1	90371000			38970	1498	28581	28814	37974	37974					0.08697676431461332
PKPSQYRKP	9	Unmodified	_PKPSQYRKP_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;ENST00000438197.2_1_11:85444955-85468786:-|nuORF;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MSMS	A375_MHC_IP_R2	2	367.5965881347656	3	367.545219	1099.61383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.329	1	42.103	41.603	42.603	0.77451								0	0	0	0.15486	1	15331	15331		3.8763	1.1411	1				38971	4889	28582	28815	37975	37975					0.06800540462791105
PKQCWENIATI	11	Unmodified	_PKQCWENIATI_					0	0	0		ENSG00000226650|ENST00000435029|KIF4B	ENSG00000226650|ENST00000435029|KIF4B	ENSG00000226650|ENST00000435029|KIF4B	MULTI-SECPEP	A375_MHC_IP_R1	1	1302.6041259765625	1	1302.65108	1301.64381	-0.65269	-0.00085023	-1.6074	-0.0020939	-2.2601	-0.0029441	1303.65004316292	123.54	0.25198	123.54	123.44	123.69	0					6	4	2	0	0	0	0.99838	1	46252	46252		4.5289	0.93237	1	24630000			38972	9706	28583	28816	37976	37976					0.005051113458193868
PKQMRKLQL	9	Unmodified	_PKQMRKLQL_					0	0	0			REV__ENSG00000083457|ENST00000263087|ITGAE	REV__ENSG00000083457|ENST00000263087|ITGAE	MULTI-MSMS	A375_MHC_IP_R1	1	381.968505859375	3	381.233988	1140.68013	-0.0010176	-3.8794E-07	-3.4346	-0.0013094	-3.4356	-0.0013098	381.5677347442369	29.993	1.2505	29.993	29.607	30.857	0					41	24	2	0	0	0	0.6898	1	9395	9395		4.897	0	1	13534000	+		38973	16805	28584	28817	37977	37977					0.11542033033197185
PKQSRQTGIAA	11	Unmodified	_PKQSRQTGIAA_					0	0	0			REV__ENST00000496116.1_1_3:99536761-99742280:+|nuORF	REV__ENST00000496116.1_1_3:99536761-99742280:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	578.720703125	2	578.825286	1155.63602	-0.40442	-0.00023409	-3.7922	-0.002195	-4.1966	-0.0024291	578.8227041548446	130.04	0.25441	130.04	129.9	130.16	0					7	4	2	0	0	0	0.72932	1	50031	50031		9.544	1.935	1	2134100	+		38974	25454	28585	28818	37978	37978					0.06442720140580604
PKRILLRVV	9	Unmodified	_PKRILLRVV_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MSMS	A375_MHC_IP_R1	1	547.401611328125	2	547.382043	1092.74953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.645	1	86.645	86.145	87.145	0								0	0	0	0.15486	1	31775	31775		0.52476	0	1		+		38975	22171	28586	28819	37979	37979					0.2068686004427036
PKRILRWRNTY	11	Unmodified	_PKRILRWRNTY_					0	0	0		ENST00000327827.11_1_16:9212636-9212786:+|nuORF	ENST00000327827.11_1_16:9212636-9212786:+|nuORF	ENST00000327827.11_1_16:9212636-9212786:+|nuORF	MSMS	A375_MHC_IP_R1	1	501.6556091308594	3	501.628276	1501.863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.965	1	44.965	44.465	45.465	0								0	0	0	0.16334	1	15710	15710		1.3296	0.11481	1				38976	10744	28587	28820	37980	37980					0.13214303419363205
PKRKRKPKEPK	11	Unmodified	_PKRKRKPKEPK_					0	0	0		CHD6|p.E123K|1|0.36|ENSG00000124177|chr20:41533237-41533237|C/T|missense_variant	CHD6|p.E123K|1|0.36|ENSG00000124177|chr20:41533237-41533237|C/T|missense_variant	CHD6|p.E123K|1|0.36|ENSG00000124177|chr20:41533237-41533237|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	696.7839965820312	2	696.45152	1390.88849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.34	1	104.1	103.6	104.6	0.76428								0	0	0	0.16307	1	39138	39138		2.7352	0	1				38977	386	28588	28821	37981	37981					0.208677779417485
PKRKRRKKKRH	11	Unmodified	_PKRKRRKKKRH_					0	0	0		SP140L|p.G217R|1|0.22|ENSG00000185404|chr2:230383521-230383521|G/A|missense_variant	SP140L|p.G217R|1|0.22|ENSG00000185404|chr2:230383521-230383521|G/A|missense_variant	SP140L|p.G217R|1|0.22|ENSG00000185404|chr2:230383521-230383521|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	759.6428833007812	2	759.508026	1517.0015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.27	1	121.72	121.22	122.22	0.44488								0	0	0	0.16334	1	46362	46362		1.3295	1.0225	1				38978	29226	28589	28822	37982	37982					0.263678911783245
PKRLKCHRMKR	11	Unmodified	_PKRLKCHRMKR_					0	0	0			REV__ENST00000513346.5_1_5:149743686-149747418:+|nuORF	REV__ENST00000513346.5_1_5:149743686-149747418:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	727.3294677734375	2	726.929374	1451.8442	-0.91468	-0.00066491	0.37285	0.00027103	-0.54184	-0.00039388	726.9295214213204	142.34	0.60748	142.34	141.88	142.49	0					27	11	3	0	0	0	0.73809	1	54560	54560		1.1933	0.88631	1	4801500	+		38979	25639	28590	28823	37983	37983					0.13634727252247103
PKRLKCHRMKR	11	Unmodified	_PKRLKCHRMKR_					0	0	0			REV__ENST00000513346.5_1_5:149743686-149747418:+|nuORF	REV__ENST00000513346.5_1_5:149743686-149747418:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	727.3291625976562	2	726.929374	1451.8442	-0.60545	-0.00044012	0.48397	0.00035181	-0.12148	-8.8306E-05	726.9296107837091	142.35	0.60796	142.38	141.98	142.58	0.030731					31	11	4	0	0	0	0.73902	1	55607	55607		0.30703	0.30703	1	5011400	+		38980	25639	28590	28823	37984	37984					0.13634727252247103
PKRLKKHLPQI	11	Unmodified	_PKRLKKHLPQI_					0	0	0		nc|ENSG00000132321|Q86XH1-5|IQCA1;ENSG00000132321|ENST00000409907|IQCA1	nc|ENSG00000132321|Q86XH1-5|IQCA1	nc|ENSG00000132321|Q86XH1-5|IQCA1	MSMS	A375_MHC_IP_R1	1	679.4406127929688	2	679.443163	1356.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.81	1	119.81	119.31	120.31	0								0	0	0	0.16337	1	44334	44334		1.1933	0.79263	1				38981	4391	28591	28824	37985	37985					0.20761277055839855
PKRRPKARRRR	11	Unmodified	_PKRRPKARRRR_					0	0	0		ENST00000606621.1_1_6:85472779-85472989:-|nuORF	ENST00000606621.1_1_6:85472779-85472989:-|nuORF	ENST00000606621.1_1_6:85472779-85472989:-|nuORF	MSMS	A375_MHC_IP_R2	2	738.9838256835938	2	738.982176	1475.9498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.85	1	112.57	112.07	113.07	0.72458								0	0	0	0.16354	1	42167	42167		0.30703	0.30703	1				38982	13914	28592	28825	37986	37986					0.23086147484423236
PKRRVSHS	8	Unmodified	_PKRRVSHS_					0	0	0		nc|ENSG00000133226|Q8IYB3-2|SRRM1;ENSG00000133226|ENST00000323848|SRRM1	nc|ENSG00000133226|Q8IYB3-2|SRRM1	nc|ENSG00000133226|Q8IYB3-2|SRRM1	MULTI-SECPEP	A375_MHC_IP_R1	1	966.718017578125	1	966.559173	965.551896	-0.25629	-0.00024772	-2.9676	-0.0028684	-3.2239	-0.0031161	966.5595748394016	121.39	0.25504	121.39	121.26	121.52	0					6	4	2	0	0	0	0.972	1	45110	45110		13.508	11.205	1	12071000			38983	4495	28593	28826	37987	37987					0.06774233834323695
PKSHWSCG	8	Unmodified	_PKSHWSCG_					0	0	0		nc|ENSG00000188089|Q3MJ16|PLA2G4E;ENSG00000188089|ENST00000696112|PLA2G4E	nc|ENSG00000188089|Q3MJ16|PLA2G4E	nc|ENSG00000188089|Q3MJ16|PLA2G4E	MULTI-MSMS	A375_MHC_IP_R1	1	451.6033020019531	2	451.202887	900.391221	-0.51589	-0.00023277	1.0129	0.00045704	0.49704	0.00022427	451.20366994847154	140.26	0.30682	140.26	140.13	140.44	0					10	5	3	0	0	0	0.7773	1	53884	53884		4.756	2.1785	1	3574700			38984	8882	28594	28827	37988	37988					-0.06295856874078254
PKTEQKRP	8	Unmodified	_PKTEQKRP_					0	0	0		ENST00000498426.5_1_1:196227442-196227487:-|nuORF	ENST00000498426.5_1_1:196227442-196227487:-|nuORF	ENST00000498426.5_1_1:196227442-196227487:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	492.68377685546875	2	492.285266	982.555979	-0.12978	-6.3886E-05	-0.68472	-0.00033708	-0.81449	-0.00040096	492.2848591322926	127.95	0.65903	127.95	127.77	128.43	0					19	12	2	0	0	0	0.77741	1	49143	49143		4.3292	0.73274	1	13798000			38985	12761	28595	28828	37989	37989					0.06400278537364557
PKTEQKRP	8	Unmodified	_PKTEQKRP_					0	0	0		ENST00000498426.5_1_1:196227442-196227487:-|nuORF	ENST00000498426.5_1_1:196227442-196227487:-|nuORF	ENST00000498426.5_1_1:196227442-196227487:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	492.285266	982.555979	-0.56819	-0.00027971	0.41098	0.00020232	-0.15721	-7.7394E-05	492.2853600506721	127.73	1.2689	127.99	127.82	129.09	0.26593	0.02244	0.00025122	NaN	4.3292	28	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8346800			38986	12761	28595	28828							0.06400278537364557
PKTQRVILK	9	Unmodified	_PKTQRVILK_					0	0	0		ENSG00000048707|ENST00000620676|VPS13D;nc|ENSG00000048707|Q5THJ4-2|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	MULTI-MSMS	A375_MHC_IP_R2	2	362.640869140625	3	361.572998	1081.69716	-0.51116	-0.00018482	-0.51245	-0.00018529	-1.0236	-0.00037011	361.5728598707418	24.391	3.2583	25.035	24.499	27.757	0.64368					171	63	5	0	0	0	0.6421	1	7859	7859		12.175	4.2293	1	2567600000			38987	1216	28596	28829	37990	37990					0.15958276910646418
PKVIVATPKV	10	Unmodified	_PKVIVATPKV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;TTN|p.L14011*|1|0.26|ENSG00000155657|chr2:178618595-178618595|A/-|frameshift_variant;TTN|p.V5956Efs*8|1|0.3|ENSG00000155657|chr2:178729292-178729338|CAGGGCAACTCTAGTACTGCATGAGCAGCTGCCGCCTTCATTGGATA/-|frameshift_variant;TTN|p.F5884Lfs*5|1|0.04|ENSG00000155657|chr2:178729553-178729553|A/-|frameshift_variant;TTN|p.D2189Tfs*17|1|0.21|ENSG00000155657|chr2:178775147-178775147|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R1	1	351.3095397949219	3	351.233982	1050.68012	-0.52454	-0.00018424	-0.071151	-2.4991E-05	-0.59569	-0.00020923	351.23376862036406	29.621	1.3016	29.621	29.201	30.503	0					42	25	2	0	0	0	0.91932	1	9358	9358		7.9454	0	1	22258000			38988	6151;14694;14693	28597	28830	37991	37991					0.15680356304824272
PKVKRQSQ	8	Unmodified	_PKVKRQSQ_					0	0	0			REV__nc|ENSG00000204463|P46379-5|BAG6	REV__nc|ENSG00000204463|P46379-5|BAG6	MULTI-SECPEP	A375_MHC_IP_R2	2	969.896240234375	1	970.579239	969.571963	-0.03058	-2.968E-05	2.8721	0.0027876	2.8415	0.0027579	970.5823648800862	131.75	0.20215	131.94	131.8	132	0.18953					5	3	2	0	0	0	0.972	1	51788	51788		1.8442	0	1	1971300	+		38989	22516	28598	28831	37992	37992					0.08595984774285625
PKVLKTSP	8	Unmodified	_PKVLKTSP_					0	0	0		nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6	nc|ENSG00000180263|Q6ZV73-2|FGD6	nc|ENSG00000180263|Q6ZV73-2|FGD6	MULTI-SECPEP	A375_MHC_IP_R1	1	435.6759033203125	2	435.276378	868.538203	-0.44739	-0.00019474	0.10546	4.5903E-05	-0.34194	-0.00014884	435.27628253922967	25.991	0.60747	25.991	25.816	26.423	0					16	11	3	0	0	0	0.90775	1	7724	7724		26.884	2.2098	1	4485900			38990	8287	28599	28832	37993	37993					0.09867563282523406
PKVLKTSP	8	Unmodified	_PKVLKTSP_					0	0	0		nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6	nc|ENSG00000180263|Q6ZV73-2|FGD6	nc|ENSG00000180263|Q6ZV73-2|FGD6	MULTI-MSMS	A375_MHC_IP_R2	2	436.3136291503906	2	435.276378	868.538203	-0.70997	-0.00030903	-0.018187	-7.9165E-06	-0.72816	-0.00031695	435.2763434586525	25.255	0.5605	25.898	25.77	26.33	0.64368					17	10	3	0	0	0	0.7766	1	8392	8392		7.2892	2.5332	1	3350700			38991	8287	28599	28832	37994	37994					0.09867563282523406
PKVNHYVAQ	9	Unmodified	_PKVNHYVAQ_					0	0	0			REV__ENSG00000145781|ENST00000274458|COMMD10	REV__ENSG00000145781|ENST00000274458|COMMD10	MULTI-SECPEP	A375_MHC_IP_R1	1	352.60626220703125	3	352.525936	1054.55598	-0.069566	-2.4524E-05	-0.076389	-2.6929E-05	-0.14595	-5.1453E-05	352.52589401914844	33.886	0.35344	33.886	33.698	34.052	0					10	6	2	0	0	0	0.60917	1	11108	11108		18.373	13.844	1	1323700	+		38992	19492	28600	28833	37995	37995					0.030882785373478328
PKWFHLPYLFQ	11	Unmodified	_PKWFHLPYLFQ_					0	0	0		nc|ENSG00000162894|O60667-2|FCMR;nc|ENSG00000162894|O60667-3|FCMR;ENSG00000162894|ENST00000367091|FCMR	nc|ENSG00000162894|O60667-2|FCMR	nc|ENSG00000162894|O60667-2|FCMR	MSMS	A375_MHC_IP_R2	2	738.5587768554688	2	738.395348	1474.77614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.77	1	125.1	124.6	125.6	0.32969								0	0	0	0.16265	1	48370	48370		4.897	1.6157	1				38993	6610	28601	28834	37996	37996					0.05774504144937964
PKYQIRIQKKR	11	Unmodified	_PKYQIRIQKKR_					0	0	0			REV__ENSG00000205301|ENST00000511113|MGAT4D	REV__ENSG00000205301|ENST00000511113|MGAT4D	MSMS	A375_MHC_IP_R1	1	729.6929931640625	2	729.456802	1456.89905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.58	1	145.58	145.08	146.08	0								0	0	0	0.1636	1	55782	55782		0	0	1		+		38994	22567	28602	28835	37997	37997					0.1888776059618067
PLAARTRTA	9	Unmodified	_PLAARTRTA_					0	0	0			REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	479.1844787597656	2	478.785433	955.556313	-0.41998	-0.00020108	-0.35893	-0.00017185	-0.77891	-0.00037293	478.7851772588213	128.66	1.3223	128.66	128.38	129.7	0					41	25	3	0	0	0	0.65721	1	49400	49400		10.824	0	1	161550000	+		38995	23639	28603	28836	37998	37998					0.0767569825721921
PLAARTRTA	9	Unmodified	_PLAARTRTA_					0	0	0			REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	479.1855163574219	2	478.785433	955.556313	-0.62016	-0.00029693	-0.65483	-0.00031352	-1.275	-0.00061045	478.78502753576123	128.34	1.4709	128.58	128.35	129.82	0.23946					59	28	3	0	0	0	0.65721	1	50367	50367		10.824	0	1	166400000	+		38996	23639	28603	28836	37999	37999					0.0767569825721921
PLAARTRTA	9	Unmodified	_PLAARTRTA_					0	0	0			REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	478.785433	955.556313	-0.41998	-0.00020108	-0.35893	-0.00017185	-0.77891	-0.00037293	478.7851772588213	128.66	1.3223	128.66	128.38	129.7	0	0.040152	0.00022281	NaN	10.824	41	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161550000	+		38997	23639	28603	28836							0.0767569825721921
PLAGFKPA	8	Unmodified	_PLAGFKPA_					0	0	0		tr|U7SVW1|U7SVW1_FUSNUElongationfactor4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=lepAPE=3SV=1	tr|U7SVW1|U7SVW1_FUSNUElongationfactor4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=lepAPE=3SV=1	tr|U7SVW1|U7SVW1_FUSNUElongationfactor4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=lepAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	401.1374816894531	2	400.736889	799.459225	0.055973	2.243E-05	0.59468	0.00023831	0.65065	0.00026074	400.7370587206906	95.876	0.66045	96.627	96.246	96.906	0.75045					21	12	2	0	0	0	0.77781	1	36377	36377		2.8892	0	1	4484600			38998	29800	28604	28837	38000	38000					0.05147336048219131
PLAHSKEG	8	Unmodified	_PLAHSKEG_					0	0	0		ENST00000491278.5_1_2:128392149-128394989:+|nuORF	ENST00000491278.5_1_2:128392149-128394989:+|nuORF	ENST00000491278.5_1_2:128392149-128394989:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	420.1239013671875	2	419.72451	837.434466	-0.034253	-1.4377E-05	0.91601	0.00038447	0.88175	0.00037009	419.72379379612187	102.12	2.446	102.88	101.14	103.58	0.76428					116	47	3	0	0	0	0.7779	1	38805	38805		2.5775	0	1	3122000			38999	12657	28605	28838	38001	38001					0.009246561748568638
PLAIIIGIP	9	Unmodified	_PLAIIIGIP_					0	0	0		ENSG00000021488|ENST00000023064|SLC7A9	ENSG00000021488|ENST00000023064|SLC7A9	ENSG00000021488|ENST00000023064|SLC7A9	MULTI-SECPEP	A375_MHC_IP_R2	2	906.9326171875	1	906.602266	905.59499	-0.33122	-0.00030028	0.10817	9.8066E-05	-0.22305	-0.00020222	906.6024472662813	133.01	0.30408	133.17	132.99	133.3	0.16487					12	5	3	0	0	0	0.53495	1	52371	52371		28.173	7.302	1	16028000			39000	1063	28606	28839	38002	38002					0.13841610839028817
PLAIMILVPL	10	Unmodified	_PLAIMILVPL_					0	0	0			REV__ENSG00000115170|ENST00000434821|ACVR1	REV__ENSG00000115170|ENST00000434821|ACVR1	MULTI-SECPEP	A375_MHC_IP_R2	2	540.7477416992188	2	540.348489	1078.68242	-0.66153	-0.00035745	-0.34	-0.00018372	-1.0015	-0.00054118	540.348281582694	137.12	0.61708	137.23	137.07	137.69	0.11134					20	11	3	0	0	0	0.92051	1	53838	53838		12.532	4.6214	1	3500200	+		39001	17860	28607	28840	38003	38003					0.14623068718287868
PLAKDVRQYR	10	Unmodified	_PLAKDVRQYR_					0	0	0			REV__HECW2|p.E807K|1|0.15|ENSG00000138411|chr2:196317289-196317289|C/T|missense_variant	REV__HECW2|p.E807K|1|0.15|ENSG00000138411|chr2:196317289-196317289|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	622.746826171875	2	623.356754	1244.69895	-0.38975	-0.00024295	-2.9807	-0.001858	-3.3705	-0.002101	623.3543374611584	128.62	0.86206	128.62	127.97	128.84	0					26	16	2	0	0	0	0.92389	1	49221	49221		7.2892	0.56607	1	4609000	+		39002	26726	28608	28841	38004	38004					0.08639285928597928
PLARKELLKD	10	Unmodified	_PLARKELLKD_					0	0	0			REV__nc|ENSG00000150347|Q14865-2|ARID5B	REV__nc|ENSG00000150347|Q14865-2|ARID5B	MSMS	A375_MHC_IP_R2	2	394.74652099609375	3	394.911679	1181.71321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.4029	1	8.818	8.318	9.318	0.4151								0	0	0	0.15637	1	2633	2633		0.15932	0	1		+		39003	19710	28609	28842	38005	38005					0.1296193835687518
PLASAFSSV	9	Unmodified	_PLASAFSSV_					0	0	0			REV__nc|ENSG00000072609|Q96EP1-5|CHFR	REV__nc|ENSG00000072609|Q96EP1-5|CHFR	MSMS	A375_MHC_IP_R1	1	439.634521484375	2	439.734543	877.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.18	1	104.18	103.68	104.68	0								0	0	0	0.1521	1	38255	38255		18.135	0	1		+		39004	16606	28610	28843	38006	38006					0.010904071148161165
PLASYTMDV	9	Unmodified	_PLASYTMDV_					0	0	0			REV__ENST00000483035.5_1_6:118886676-118973579:-|nuORF	REV__ENST00000483035.5_1_6:118886676-118973579:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	499.138671875	2	498.738968	995.463383	-0.3853	-0.00019216	-0.18165	-9.0596E-05	-0.56695	-0.00028276	498.73886133026275	73.969	0.65871	73.969	73.69	74.349	0					21	12	2	0	0	0	0.32899	1	26950	26950		28.487	1.6032	1	1585900	+		39005	17700	28611	28844	38007	38007					-0.034529873110159315
PLAVSGLL	8	Unmodified	_PLAVSGLL_					0	0	0		nc|ENSG00000080546|Q9Y6P5|SESN1	nc|ENSG00000080546|Q9Y6P5|SESN1	nc|ENSG00000080546|Q9Y6P5|SESN1	MULTI-SECPEP	A375_MHC_IP_R1	1	385.6446533203125	2	385.244547	768.47454	0.3705	0.00014273	0.12578	4.8458E-05	0.49628	0.00019119	385.2445125853385	56.624	0.50784	56.624	56.397	56.905	0					15	9	2	0	0	0	0.69059	1	20325	20325		30.225	0	1	1814200			39006	14488	28612	28845	38008	38008					0.08104202845447617
PLAVSGLL	8	Unmodified	_PLAVSGLL_					0	0	0		nc|ENSG00000080546|Q9Y6P5|SESN1	nc|ENSG00000080546|Q9Y6P5|SESN1	nc|ENSG00000080546|Q9Y6P5|SESN1	MULTI-SECPEP	A375_MHC_IP_R2	2	385.6445007324219	2	385.244547	768.47454	-0.19956	-7.6881E-05	-0.10522	-4.0535E-05	-0.30478	-0.00011742	385.2444834191375	55.58	0.55894	56.331	56.135	56.694	0.75075					14	10	2	0	0	0	0.69059	1	21023	21023		38.151	0	1	1830400			39007	14488	28612	28845	38009	38009					0.08104202845447617
PLCCCGPDFW	10	Unmodified	_PLCCCGPDFW_					0	0	0		ENST00000524471.1_1_11:124908381-124908994:+|nuORF;ENSG00000149548|ENST00000344762|CCDC15	ENST00000524471.1_1_11:124908381-124908994:+|nuORF	ENST00000524471.1_1_11:124908381-124908994:+|nuORF	MSMS	A375_MHC_IP_R1	1	570.7216186523438	2	570.719198	1139.42384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.625	1	79.625	79.125	80.125	0								0	0	0	0.15398	1	29067	29067		7.9102	2.6795	1				39008	5813	28613	28846	38010	38010					-0.1402915385774577
PLDERDED	8	Unmodified	_PLDERDED_					0	0	0		ENSG00000230062|ENST00000565422|ANKRD66	ENSG00000230062|ENST00000565422|ANKRD66	ENSG00000230062|ENST00000565422|ANKRD66	MULTI-MSMS	A375_MHC_IP_R1	1	988.8206176757812	1	988.421795	987.414519	-0.16539	-0.00016347	-0.065879	-6.5117E-05	-0.23127	-0.00022859	988.421583985889	144.18	0.4648	144.18	143.78	144.25	0					11	9	2	0	0	0	0.77842	1	55290	55290		0.69038	0	1	2531700			39009	9713	28614	28847	38011	38011					-0.07969184346427483
PLDFARTQL	9	Unmodified	_PLDFARTQL_					0	0	0		SLC25A31|p.R152Q|1|0.58|ENSG00000151475|chr4:127764337-127764337|G/A|missense_variant	SLC25A31|p.R152Q|1|0.58|ENSG00000151475|chr4:127764337-127764337|G/A|missense_variant	SLC25A31|p.R152Q|1|0.58|ENSG00000151475|chr4:127764337-127764337|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	531.2048950195312	2	530.792924	1059.57129	-0.78966	-0.00041915	-2.038	-0.0010817	-2.8276	-0.0015009	530.7918878813801	84.964	0.61385	84.964	84.697	85.311	0					16	11	2	0	0	0	0.65623	1	31085	31085		19.257	0	1	2250800			39010	29175	28615	28848	38012	38012					0.04389145334562272
PLDHLKPLEY	10	Unmodified	_PLDHLKPLEY_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-MSMS	A375_MHC_IP_R1	1	409.2923889160156	3	408.892284	1223.65502	0.0030157	1.2331E-06	0.27165	0.00011108	0.27467	0.00011231	408.8923760799844	56.667	0.91624	56.667	56.397	57.313	0					46	17	4	0	0	0	0.0049421	1	20277	20277		96.034	76.408	1	14437000			39011	4710	28616	28849	38013	38013					0.052142567116106875
PLDHLKPLEY	10	Unmodified	_PLDHLKPLEY_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-MSMS	A375_MHC_IP_R2	2	409.29205322265625	3	408.892284	1223.65502	-0.11766	-4.811E-05	-0.014693	-6.0079E-06	-0.13235	-5.4117E-05	408.8922470174915	55.771	1.1713	56.521	56.237	57.408	0.75014					39	22	3	0	0	0	0.018886	1	21057	21057		86.276	63.501	1	15370000			39012	4710	28616	28849	38014	38014					0.052142567116106875
PLDHLKPLEY	10	Unmodified	_PLDHLKPLEY_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-SECPEP	A375_MHC_IP_R2	2	612.6620483398438	2	612.834788	1223.65502	-0.66551	-0.00040785	0.20439	0.00012525	-0.46112	-0.00028259	612.8351777052487	55.788	0.40789	56.538	56.337	56.745	0.75015					12	7	2	0	0	0	0.76544	1	21093	21093		37.771	34.49	1	1440500			39013	4710	28616	28849	38015	38015					0.052142567116106875
PLDHRGRTL	9	Unmodified	_PLDHRGRTL_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-SECPEP	A375_MHC_IP_R2	2	532.1641235351562	2	532.801614	1063.58868	-1.1989	-0.00063875	3.0773	0.0016396	1.8784	0.0010008	533.3054343413534	53.664	1.4269	54.415	53.944	55.371	0.75105					77	27	4	0	0	0	0.65246	1	20580	20580		6.7232	0	1	12010000			39014	9691	28617	28850	38016	38016					0.05942485660239072
PLDKVHAK	8	Unmodified	_PLDKVHAK_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MSMS	A375_MHC_IP_R1	1	454.3053894042969	2	454.271627	906.528701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.575	1	19.575	19.075	20.075	0								0	0	0	0.16876	1	4895	4895		9.3474	0	1				39015	9060	28618	28851	38017	38017					0.07169794996991641
PLDNIFRVCK	10	Unmodified	_PLDNIFRVCK_					0	0	0		ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	602.63671875	2	602.828983	1203.64341	-0.29826	-0.0001798	-2.4316	-0.0014658	-2.7298	-0.0016456	602.8276504409873	101.48	0.50536	101.48	101.29	101.8	0					16	9	2	0	0	0	0.86849	1	37320	37320		21.59	9.9499	1	1875100			39016	4114	28619	28852	38018	38018					0.049737364166276166
PLEARTPR	8	Unmodified	_PLEARTPR_					0	0	0		ENST00000440716.5_1_19:54871478-54875971:-|nuORF	ENST00000440716.5_1_19:54871478-54875971:-|nuORF	ENST00000440716.5_1_19:54871478-54875971:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	470.67120361328125	2	470.272158	938.529764	-0.23464	-0.00011035	-0.64888	-0.00030515	-0.88353	-0.0004155	470.27176794355717	125.88	0.4512	125.88	125.65	126.1	0					12	8	3	0	0	0	0.7779	1	48027	48027		2.5775	0	1	25506000			39017	11974	28620	28853	38019	38019					0.058040093658974
PLEQQNHLI	9	Unmodified	_PLEQQNHLI_					0	0	0			REV__nc|ENSG00000115310|Q9NQC3-4|RTN4	REV__nc|ENSG00000115310|Q9NQC3-4|RTN4	MULTI-SECPEP	A375_MHC_IP_R2	2	364.9326477050781	3	364.532979	1090.57711	-0.41159	-0.00015004	0.28606	0.00010428	-0.12553	-4.5761E-05	364.53306236924124	28.38	0.70792	29.058	28.706	29.414	0.67857					23	13	3	0	0	0	0.24479	1	9784	9784		31.268	1.4278	1	16568000	+		39018	17873	28621	28854	38020	38020					0.03544243846226891
PLERHRLW	8	Unmodified	_PLERHRLW_					0	0	0		ENSG00000184984|ENST00000383263|CHRM5	ENSG00000184984|ENST00000383263|CHRM5	ENSG00000184984|ENST00000383263|CHRM5	MULTI-SECPEP	A375_MHC_IP_R1	1	370.2856140136719	3	369.545442	1105.6145	0.39412	0.00014565	-1.2403	-0.00045835	-0.8462	-0.00031271	369.5449230677699	51.164	0.55908	51.164	50.966	51.525	0					13	10	2	0	0	0	0.972	1	18221	18221		0.40072	0	1	794570			39019	8624	28622	28855	38021	38021					0.06591379902511108
PLERRRQEG	9	Unmodified	_PLERRRQEG_					0	0	0			REV__ENST00000255198.2_2_5:76373098-76373719:-|nuORF	REV__ENST00000255198.2_2_5:76373098-76373719:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	570.713623046875	2	570.815253	1139.61595	-0.39775	-0.00022704	-0.11847	-6.7627E-05	-0.51622	-0.00029467	570.815353807823	32.205	0.30888	32.205	32.024	32.333	0					8	5	2	0	0	0	0.68216	1	10414	10414		8.5933	0.68312	1	3492100	+		39020	23144	28623	28856	38022	38022					0.051729692006119876
PLETWRKFILL	11	Unmodified	_PLETWRKFILL_					0	0	0			REV__ENST00000396049.4_1_2:74382388-74382565:-|nuORF	REV__ENST00000396049.4_1_2:74382388-74382565:-|nuORF	MSMS	A375_MHC_IP_R2	2	472.6845397949219	3	472.618495	1414.83366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.44	1	135.57	135.07	136.07	0.13901								0	0	0	0.16334	1	53243	53243		0.45452	0	1		+		39021	24335	28624	28857	38023	38023					0.14283346350521242
PLEYNSVVR	9	Unmodified	_PLEYNSVVR_					0	0	0		ENSG00000187950|ENST00000537054|OVCH1;nc|ENSG00000187950|Q7RTY7|OVCH1	ENSG00000187950|ENST00000537054|OVCH1	ENSG00000187950|ENST00000537054|OVCH1	MULTI-SECPEP	A375_MHC_IP_R2	2	359.9286804199219	3	359.529346	1075.56621	-1.0902	-0.00039196	-0.16097	-5.7872E-05	-1.2512	-0.00044984	359.5292188193617	29.196	0.35369	29.895	29.78	30.134	0.69872					11	6	2	0	0	0	0.71541	1	10188	10188		4.5289	2.4429	1	6801800			39022	8867	28625	28858	38024	38024					0.03144841471953441
PLEYRIKFDEI	11	Unmodified	_PLEYRIKFDEI_					0	0	0			REV__tr|U7T5L0|U7T5L0_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00156PE=4SV=1	REV__tr|U7T5L0|U7T5L0_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00156PE=4SV=1	MSMS	A375_MHC_IP_R2	2	475.0733947753906	3	474.925765	1421.75547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.061	1	86.794	86.294	87.294	0.733								0	0	0	0.16269	1	32727	32727		4.7159	0.30977	1		+		39023	28828	28626	28859	38025	38025					0.061458689746359596
PLFFPPLRL	9	Unmodified	_PLFFPPLRL_					0	0	0		ENST00000356554.7_1_1:117910300-117910387:+|nuORF	ENST00000356554.7_1_1:117910300-117910387:+|nuORF	ENST00000356554.7_1_1:117910300-117910387:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	367.6253356933594	3	367.226939	1098.65899	-0.13972	-5.131E-05	-2.1725	-0.00079781	-2.3123	-0.00084912	367.22558294946754	23.447	0.50541	24.077	23.828	24.333	0.63015					24	9	4	0	0	0	0.62719	1	7563	7563		8.7454	1.1365	1	8608900			39024	10967	28627	28860	38026	38026					0.11360390995969283
PLFLLFWFRPR	11	Unmodified	_PLFLLFWFRPR_					0	0	0		nc|ENSG00000181652|Q674R7-2|ATG9B;ATG9B|p.R698Lfs*11|1|0.14|ENSG00000181652|chr7:151017232-151017232|C/-|frameshift_variant;ENSG00000181652|ENST00000639579|ATG9B	nc|ENSG00000181652|Q674R7-2|ATG9B	nc|ENSG00000181652|Q674R7-2|ATG9B	MULTI-MSMS	A375_MHC_IP_R1	1	746.8651123046875	2	746.434807	1490.85506	-0.87745	-0.00065496	-0.051795	-3.8661E-05	-0.92924	-0.00069362	746.4346264338812	149.04	1.9772	149.04	147.8	149.77	0					134	48	4	0	0	0	0.73934	3	56501	56501;56639;57085		0	0	1	706660			39025	198	28628	28861	38027;38028;38029	38027					0.1292677616986566
PLFLLFWFRPR	11	Unmodified	_PLFLLFWFRPR_					0	0	0		nc|ENSG00000181652|Q674R7-2|ATG9B;ATG9B|p.R698Lfs*11|1|0.14|ENSG00000181652|chr7:151017232-151017232|C/-|frameshift_variant;ENSG00000181652|ENST00000639579|ATG9B	nc|ENSG00000181652|Q674R7-2|ATG9B	nc|ENSG00000181652|Q674R7-2|ATG9B	MULTI-MSMS	A375_MHC_IP_R2	2	746.864990234375	2	746.434807	1490.85506	-0.67008	-0.00050017	-0.14644	-0.00010931	-0.81652	-0.00060948	746.4345566956615	149.12	2.1079	149.14	147.66	149.77	0.018692					174	71	4	0	0	0	0.73934	4	57558	57558;57601;57959;58012		0	0	1	765770			39026	198	28628	28861	38030;38031;38032;38033	38030					0.1292677616986566
PLFLWYLMF	9	Unmodified	_PLFLWYLMF_					0	0	0			REV__GPR148|p.S47F|1|0.36|ENSG00000173302|chr2:130729291-130729291|C/T|missense_variant	REV__GPR148|p.S47F|1|0.36|ENSG00000173302|chr2:130729291-130729291|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	410.9522705078125	3	410.552435	1228.63547	0.10277	4.2191E-05	-0.32809	-0.0001347	-0.22532	-9.2507E-05	410.5523762681657	33.723	0.60676	33.723	33.496	34.103	0					21	11	3	0	0	0	0.79837	1	11077	11077		2.9952	2.9952	1	2910500	+		39027	26698	28629	28862	38034	38034					0.030302091671273956
PLFPEVKLF	9	Unmodified	_PLFPEVKLF_					0	0	0			REV__ASNS|p.P173S|1|0.64|ENSG00000070669|chr7:97859369-97859369|G/A|missense_variant	REV__ASNS|p.P173S|1|0.64|ENSG00000070669|chr7:97859369-97859369|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	364.2830810546875	3	363.882949	1088.62702	0.11741	4.2725E-05	-0.1399	-5.0907E-05	-0.022485	-8.182E-06	363.882849617971	85.557	0.50897	86.293	86.034	86.543	0.73601					14	9	2	0	0	0	0.80005	1	32569	32569		2.7352	0	1	1514400	+		39028	15464	28630	28863	38035	38035					0.08624978522175297
PLFRLKNRRLY	11	Unmodified	_PLFRLKNRRLY_					0	0	0			REV__ENSG00000066557|ENST00000370952|LRRC40	REV__ENSG00000066557|ENST00000370952|LRRC40	MSMS	A375_MHC_IP_R1	1	492.6374206542969	3	492.636772	1474.88849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.046	1	64.046	63.546	64.546	0								0	0	0	0.1635	1	23165	23165		0.50596	0	1		+		39029	16519	28631	28864	38036	38036					0.1700377794177257
PLFRRCPRLRR	11	Unmodified	_PLFRRCPRLRR_					0	0	0		nc|ENSG00000099364|Q6PCT2-2|FBXL19;ENSG00000099364|ENST00000338343|FBXL19;nc|ENSG00000099364|Q6PCT2|FBXL19	nc|ENSG00000099364|Q6PCT2-2|FBXL19	nc|ENSG00000099364|Q6PCT2-2|FBXL19	MSMS	A375_MHC_IP_R1	1	735.4407958984375	2	735.440963	1468.86737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.157	1	87.157	86.657	87.657	0								0	0	0	0.16353	1	31976	31976		0.35063	0	1				39030	2075	28632	28865	38037	38037					0.15169489361255728
PLFVNVNNQT	10	Unmodified	_PLFVNVNNQT_					0	0	0		CPS1|p.D358N|1|0.2|ENSG00000021826|chr2:210591955-210591955|G/A|missense_variant	CPS1|p.D358N|1|0.2|ENSG00000021826|chr2:210591955-210591955|G/A|missense_variant	CPS1|p.D358N|1|0.2|ENSG00000021826|chr2:210591955-210591955|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	573.1672973632812	2	573.301113	1144.58767	0.22466	0.0001288	0.30284	0.00017362	0.5275	0.00030241	573.3010630230402	48.782	0.60765	48.782	48.476	49.084	0					15	11	2	0	0	0	0.90513	1	17180	17180		12.241	2.8575	1	1745200			39031	649	28633	28866	38038	38038					0.02116226500652374
PLGARVGR	8	Unmodified	_PLGARVGR_					0	0	0		ENST00000547344.5_1_12:58159078-58160873:-|nuORF;ENST00000228606.8_1_12:58158304-58160873:-|nuORF	ENST00000547344.5_1_12:58159078-58160873:-|nuORF	ENST00000547344.5_1_12:58159078-58160873:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	413.65625	2	413.256311	824.49807	0.0046028	1.9021E-06	0.015576	6.4368E-06	0.020179	8.3389E-06	413.2562256818076	132.87	1.7819	132.87	132.64	134.42	0					76	34	4	0	0	0	0.77839	1	51199	51199		0.79363	0	1	131260000			39032	10129	28634	28867	38039	38039					0.0788006140262496
PLGCQDGW	8	Unmodified	_PLGCQDGW_					0	0	0			REV__ENSG00000153802|ENST00000283916|TMPRSS11D	REV__ENSG00000153802|ENST00000283916|TMPRSS11D	MSMS	A375_MHC_IP_R1	1	438.5884094238281	2	438.189445	874.364338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.921	1	84.921	84.421	85.421	0								0	0	0	0.16876	1	31115	31115		5.7604	0.52976	1		+		39033	19849	28635	28868	38040	38040					-0.07786965485263408
PLGIAPYS	8	Unmodified	_PLGIAPYS_					0	0	0		ENST00000460343.5_1_3:53267112-53267397:-|nuORF	ENST00000460343.5_1_3:53267112-53267397:-|nuORF	ENST00000460343.5_1_3:53267112-53267397:-|nuORF	MSMS	A375_MHC_IP_R2	2	409.62548828125	2	409.226354	816.438155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.482	1	82.225	81.725	82.725	0.74293								0	0	0	0.16876	1	30944	30944		20.871	0	1				39034	12165	28636	28869	38041	38041					0.02259325948705282
PLGPAPVSV	9	Unmodified	_PLGPAPVSV_					0	0	0		ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	MULTI-SECPEP	A375_MHC_IP_R2	2	837.2841186523438	1	836.48763	835.480354	-0.80201	-0.00067087	0.32412	0.00027112	-0.47789	-0.00039975	836.4877656952407	74.873	0.9132	75.61	75.315	76.229	0.73752					34	17	3	0	0	0	0.47368	1	28561	28561		26.884	9.9414	1	11013000			39035	7585	28637	28870	38042	38042					0.05603301357098189
PLGPAPVSV	9	Unmodified	_PLGPAPVSV_					0	0	0		ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	MULTI-MATCH	A375_MHC_IP_R1	1		1	836.48763	835.480354	-0.36278	-0.00030346	0.01461	1.2221E-05	-0.34817	-0.00029124	836.487514993311	75.735	0.70472	75.735	75.362	76.067	0	0.062428	-0.00010863	NaN	26.884	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12314000			39036	7585	28637	28870							0.05603301357098189
PLGPCQDGWV	10	Unmodified	_PLGPCQDGWV_					0	0	0		nc|ENSG00000175003|O15245-4|SLC22A1;nc|ENSG00000175003|O15245-3|SLC22A1;nc|ENSG00000175003|O15245-2|SLC22A1;ENSG00000175003|ENST00000366963|SLC22A1	nc|ENSG00000175003|O15245-4|SLC22A1	nc|ENSG00000175003|O15245-4|SLC22A1	MULTI-MSMS	A375_MHC_IP_R2	2	536.6965942382812	2	536.250034	1070.48552	-1.0782	-0.0005782	3.8314	0.0020546	2.7532	0.0014764	536.7526361080239	51.458	0.25324	52.211	52.118	52.372	0.75225					5	4	2	0	0	0	0.70146	1	19344	19344		11.64	2.2929	1	526850			39037	7923	28638	28871	38043	38043					-0.04690762842596996
PLGQREFLS	9	Unmodified	_PLGQREFLS_					0	0	0			REV__ENSG00000251322|ENST00000262795|SHANK3	REV__ENSG00000251322|ENST00000262795|SHANK3	MULTI-SECPEP	A375_MHC_IP_R2	2	524.4561157226562	2	523.785099	1045.55564	-0.84762	-0.00044397	2.0691	0.0010838	1.2215	0.00063981	524.288463604162	60.389	1.117	61.134	60.601	61.718	0.74504					39	21	2	0	0	0	0.4261	1	22675	22675		24.021	0	1	1455900	+		39038	22846	28639	28872	38044	38044					0.03468858817518594
PLGRDQYKEM	10	Unmodified	_PLGRDQYKEM_					0	0	0		nc|ENSG00000167968|Q92874-2|DNASE1L2;ENSG00000167968|ENST00000320700|DNASE1L2	nc|ENSG00000167968|Q92874-2|DNASE1L2	nc|ENSG00000167968|Q92874-2|DNASE1L2	MULTI-SECPEP	A375_MHC_IP_R1	1	413.66888427734375	3	412.872895	1235.59686	0.25019	0.0001033	-1.0804	-0.00044606	-0.83019	-0.00034276	412.8724305056742	23.124	0.50661	23.124	22.823	23.33	0					10	9	2	0	0	0	0.92389	1	6377	6377		3.8763	0.28927	1	2496800			39039	7243	28640	28873	38045	38045					-0.011517482053250205
PLGSIKWVIY	10	Unmodified	_PLGSIKWVIY_					0	0	0			REV__ENSG00000166796|ENST00000541669|LDHC	REV__ENSG00000166796|ENST00000541669|LDHC	MULTI-MSMS	A375_MHC_IP_R2	2	393.2678527832031	3	392.56562	1174.67503	-0.45979	-0.0001805	1.5925	0.00062517	1.1327	0.00044467	392.9008364531867	24.164	0.56114	24.808	24.499	25.06	0.64368					24	10	3	0	0	0	0.71455	1	7795	7795		5.7834	1.2546	1	4454400	+		39040	20701	28641	28874	38046	38046					0.09468052442230146
PLGSQSSWDAP	11	Unmodified	_PLGSQSSWDAP_					0	0	0			REV__ENST00000361198.9_1_10:103874266-103874668:-|nuORF	REV__ENST00000361198.9_1_10:103874266-103874668:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	573.6820678710938	2	572.767103	1143.51965	-0.19494	-0.00011165	0.092277	5.2853E-05	-0.10266	-5.8802E-05	572.7671572680122	42.334	1.374	43.106	42.502	43.876	0.7724					55	26	3	0	0	0	0.63737	1	15588	15588		20.415	1.1575	1	13544000	+		39041	23903	28642	28875	38047	38047					-0.046366431500018734
PLGVVTVRTW	10	Unmodified	_PLGVVTVRTW_					0	0	0		ENST00000471856.1_1_1:146650896-146650974:+|nuORF;ENST00000300289.9_1_15:44061782-44062475:+|nuORF	ENST00000471856.1_1_1:146650896-146650974:+|nuORF	ENST00000471856.1_1_1:146650896-146650974:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	564.73193359375	2	564.332216	1126.64988	-0.92914	-0.00052435	-0.29635	-0.00016724	-1.2255	-0.00069158	564.3321023545165	56.874	0.50906	57.624	57.306	57.815	0.75015					20	9	3	0	0	0	0.8125	1	21499	21499		18.146	0	1	6386000			39042	10536	28643	28876	38048	38048					0.09161997639648689
PLGYIKQP	8	Unmodified	_PLGYIKQP_					0	0	0		ENST00000599380.5_1_19:17581362-17608411:+|nuORF	ENST00000599380.5_1_19:17581362-17608411:+|nuORF	ENST00000599380.5_1_19:17581362-17608411:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	457.6711730957031	2	458.268553	914.522553	-0.26379	-0.00012089	-2.7525	-0.0012614	-3.0163	-0.0013823	458.26755064768037	42.522	0.45716	43.294	43.116	43.573	0.7724					12	8	2	0	0	0	0.82569	1	15911	15911		20.871	2.7362	1	1295700			39043	13857	28644	28877	38049	38049					0.06187276765467686
PLGYIKQP	8	Unmodified	_PLGYIKQP_					0	0	0		ENST00000599380.5_1_19:17581362-17608411:+|nuORF	ENST00000599380.5_1_19:17581362-17608411:+|nuORF	ENST00000599380.5_1_19:17581362-17608411:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	458.268553	914.522553	-0.11523	-5.2808E-05	-4.6344	-0.0021238	-4.7496	-0.0021766	458.26632875243774	43.425	0.2534	43.425	43.249	43.502	0	0.065384	-5.3227E-05	NaN	20.871	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2067800			39044	13857	28644	28877							0.06187276765467686
PLHAPRAL	8	Unmodified	_PLHAPRAL_					0	0	0			REV__ENST00000467084.1_1_7:43908584-43908967:-|nuORF	REV__ENST00000467084.1_1_7:43908584-43908967:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	437.1641540527344	2	437.766512	873.518471	-0.49361	-0.00021609	1.9483	0.00085292	1.4547	0.00063683	437.7672354560572	143.61	0.1888	143.61	143.49	143.68	0					5	3	2	0	0	0	0.972	1	55089	55089		0.79363	0	1	477110	+		39045	25052	28645	28878	38050	38050					0.07665232062413452
PLHAPRAL	8	Unmodified	_PLHAPRAL_					0	0	0			REV__ENST00000467084.1_1_7:43908584-43908967:-|nuORF	REV__ENST00000467084.1_1_7:43908584-43908967:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	437.766512	873.518471	-0.10869	-4.7582E-05	2.4329	0.001065	2.3242	0.0010175	437.7674226142213	143.64	0.30206	143.66	143.54	143.84	0.024414	0.02365	0.00012096	NaN	0.79363	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	427060	+		39046	25052	28645	28878							0.07665232062413452
PLHDDATPL	9	Unmodified	_PLHDDATPL_					0	0	0		ENST00000316836.4_1_14:74180562-74180982:-|nuORF	ENST00000316836.4_1_14:74180562-74180982:-|nuORF	ENST00000316836.4_1_14:74180562-74180982:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	490.1476745605469	2	489.748182	977.481811	-0.73276	-0.00035887	-0.15474	-7.5783E-05	-0.88749	-0.00043465	489.74814508457416	51.291	0.45654	52.043	51.864	52.321	0.75225					14	8	2	0	0	0	0.64808	1	19332	19332		11.64	0.52583	1	1775900			39047	10663	28646	28879	38051	38051					-0.007831093448203319
PLHLCAGG	8	Unmodified	_PLHLCAGG_					0	0	0		ENST00000244565.7_1_6:41000663-41001646:-|nuORF	ENST00000244565.7_1_6:41000663-41001646:-|nuORF	ENST00000244565.7_1_6:41000663-41001646:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	767.8260498046875	1	767.386871	766.379594	-0.84417	-0.0006478	-2.6389	-0.002025	-3.4831	-0.0026728	767.3816340893753	92.597	0.35417	93.336	93.038	93.392	0.73902					8	6	2	0	0	0	0.972	1	35198	35198		0.79363	0	1	1132100			39048	10177	28647	28880	38052	38052					-0.012940538974021365
PLHRRRMY	8	Unmodified	_PLHRRRMY_					0	0	0			REV__nc|ENSG00000188803|Q6ZSJ9|SHISA6	REV__nc|ENSG00000188803|Q6ZSJ9|SHISA6	MULTI-SECPEP	A375_MHC_IP_R2	2	564.2108154296875	2	564.814002	1127.61345	-0.40951	-0.0002313	-0.27465	-0.00015512	-0.68416	-0.00038642	564.8138558897555	98.548	1.0178	99.308	98.995	100.01	0.75977					27	19	2	0	0	0	0.96296	1	37313	37313		15.768	15.768	1	4021500	+		39049	22115	28648	28881	38053	38053					0.0547484226196957
PLIEPKREQLK	11	Unmodified	_PLIEPKREQLK_					0	0	0			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	MSMS	A375_MHC_IP_R2	2	675.7911376953125	2	675.908819	1349.80309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.546	1	91.28	90.78	91.78	0.7345								0	0	0	0.16337	1	34451	34451		1.1933	0	1		+		39050	22015	28649	28882	38054	38054					0.14217567965465605
PLISILFY	8	Unmodified	_PLISILFY_					0	0	0			REV__ENST00000290795.7_1_1:46126652-46126787:-|nuORF	REV__ENST00000290795.7_1_1:46126652-46126787:-|nuORF	MSMS	A375_MHC_IP_R1	1	483.3356628417969	2	483.288954	964.563355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.565	1	84.565	84.065	85.065	0								0	0	0	0.16876	1	30979	30979		6.3541	0	1		+		39051	23357	28650	28883	38055	38055					0.07965618085097503
PLIYRHRL	8	Unmodified	_PLIYRHRL_					0	0	0			REV__ENST00000402881.5_1_22:39907918-39908444:+|nuORF	REV__ENST00000402881.5_1_22:39907918-39908444:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	356.2634582519531	3	356.553937	1066.63998	0.28692	0.0001023	1.3984	0.00049862	1.6854	0.00060092	356.5544521462493	21.701	0.45676	21.701	21.352	21.808	0					12	8	2	0	0	0	0.972	1	5648	5648		10.824	0	1	504920	+		39052	24414	28651	28884	38056	38056					0.10932854424913785
PLIYTRLI	8	Unmodified	_PLIYTRLI_					0	0	0		TRPM4|p.T709I|1|0.29|ENSG00000130529|chr19:49190314-49190314|C/T|missense_variant;nc|ENSG00000130529|Q8TD43-2|TRPM4;nc|ENSG00000130529|Q8TD43-3|TRPM4;ENSG00000130529|ENST00000252826|TRPM4	TRPM4|p.T709I|1|0.29|ENSG00000130529|chr19:49190314-49190314|C/T|missense_variant	TRPM4|p.T709I|1|0.29|ENSG00000130529|chr19:49190314-49190314|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	989.0546875	1	988.618979	987.611703	0.17622	0.00017422	0.50605	0.00050029	0.68227	0.0006745	988.6202954910178	125.46	0.40421	125.46	125.3	125.7	0					12	7	3	0	0	0	0.77554	1	47680	47680		11.114	3.8252	1	57547000			39053	4252	28652	28885	38057	38057					0.11740111724986946
PLIYWQRKISI	11	Unmodified	_PLIYWQRKISI_					0	0	0		ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	MULTI-SECPEP	A375_MHC_IP_R1	1	473.6973876953125	3	472.950245	1415.82891	-0.70137	-0.00033171	0.39725	0.00018788	-0.30413	-0.00014384	472.9505873569041	66.966	0.61258	66.966	66.632	67.245	0					14	11	2	0	0	0	0.99847	1	24231	24231		2.8433	0.21205	1	1588500			39054	9907	28653	28886	38058	38058					0.13762462207751014
PLIYWQRKISI	11	Unmodified	_PLIYWQRKISI_					0	0	0		ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	MULTI-SECPEP	A375_MHC_IP_R2	2	473.2010192871094	3	472.950245	1415.82891	-0.7562	-0.00035764	0.6762	0.00031981	-0.079998	-3.7835E-05	472.950451312966	66.074	0.76523	66.812	66.375	67.14	0.73812					19	14	2	0	0	0	0.99847	1	24987	24987		5.0475	2.4163	1	1338200			39055	9907	28653	28886	38059	38059					0.13762462207751014
PLKKRAKQ	8	Unmodified	_PLKKRAKQ_					0	0	0			REV__ENST00000563307.1_1_16:58197751-58197943:-|nuORF	REV__ENST00000563307.1_1_16:58197751-58197943:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	485.22161865234375	2	484.821818	967.629084	-0.63105	-0.00030595	0.2797	0.00013561	-0.35135	-0.00017034	484.8217138279623	147.55	0.24637	147.55	147.45	147.7	0					52	22	3	0	0	0	0.972	1	56366	56366		0.69038	0	1	370520	+		39056	26203	28654	28887	38060	38060					0.14397452050639004
PLKLILLPVL	10	Unmodified	_PLKLILLPVL_					0	0	0		ENSG00000160593|ENST00000356289|JAML;nc|ENSG00000160593|Q86YT9-3|JAML;ENST00000534294.5_1_11:118074137-118095689:-|nuORF	ENSG00000160593|ENST00000356289|JAML	ENSG00000160593|ENST00000356289|JAML	MSMS	A375_MHC_IP_R1	1	559.8948364257812	2	559.899203	1117.78385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.841	1	89.841	89.341	90.341	0								0	0	0	0.15585	1	33012	33012		1.8442	0	1				39057	6426	28655	28888	38061	38061					0.22967263412510874
PLKLPKIRILH	11	Unmodified	_PLKLPKIRILH_					0	0	0			REV__ENST00000465432.1_1_2:99797706-99812165:+|nuORF	REV__ENST00000465432.1_1_2:99797706-99812165:+|nuORF	MSMS	A375_MHC_IP_R1	1	664.44775390625	2	664.450457	1326.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.08	1	125.08	124.58	125.58	0								0	0	0	0.1629	1	47397	47397		3.5965	2.1146	1		+		39058	21891	28656	28889	38062	38062					0.23599349203982456
PLKLSEGWT	9	Unmodified	_PLKLSEGWT_					0	0	0			REV__ENSG00000152580|ENST00000282466|IGSF10	REV__ENSG00000152580|ENST00000282466|IGSF10	MSMS	A375_MHC_IP_R2	2	515.7222900390625	2	515.782025	1029.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.751	1	80.496	79.996	80.996	0.74474								0	0	0	0.1535	1	30270	30270		15.847	1.0089	1		+		39059	19808	28657	28890	38063	38063					0.035903405860153725
PLKPAASCMRL	11	Unmodified	_PLKPAASCMRL_					0	0	0			REV__ENST00000607532.5_1_6:13307806-13327130:-|nuORF	REV__ENST00000607532.5_1_6:13307806-13327130:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	396.2740478515625	3	396.21935	1185.63622	-0.10542	-4.1771E-05	-0.79271	-0.00031409	-0.89814	-0.00035586	396.2190351151722	46.396	0.40147	46.396	46.144	46.545	0					17	7	3	0	0	0	0.7279	1	16195	16195		10.899	3.8619	1	2402000	+		39060	19507	28658	28891	38064	38064					0.05082680544546747
PLKQDQEQKIY	11	Unmodified	_PLKQDQEQKIY_					0	0	0		ENST00000479768.6_1_7:142643674-142659293:-|nuORF;ENSG00000197993|ENST00000355265|KEL	ENST00000479768.6_1_7:142643674-142659293:-|nuORF	ENST00000479768.6_1_7:142643674-142659293:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	464.6513366699219	3	463.91727	1388.72998	-0.15465	-7.1745E-05	-1.066	-0.00049452	-1.2206	-0.00056627	464.2504090351361	63.118	0.87157	63.118	62.505	63.377	0					35	16	4	0	0	0	0.72829	1	22827	22827		10.527	1.7757	1	2169500			39061	9218	28659	28892	38065	38065					0.051163944521931626
PLKQRFPLLRW	11	Unmodified	_PLKQRFPLLRW_					0	0	0			REV__ENST00000371646.9_1_6:44214858-44216493:+|nuORF	REV__ENST00000371646.9_1_6:44214858-44216493:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	727.5123901367188	2	727.443163	1452.87177	-0.17943	-0.00013052	-3.7376	-0.0027189	-3.917	-0.0028494	727.4399165898517	126.6	0.25296	126.6	126.51	126.76	0					6	4	2	0	0	0	0.73779	1	48450	48450		1.4819	0.28856	1	3946700	+		39062	24046	28660	28893	38066	38066					0.16345277055825136
PLKYHALK	8	Unmodified	_PLKYHALK_					0	0	0			REV__ENSG00000095777|ENST00000642920|MYO3A	REV__ENSG00000095777|ENST00000642920|MYO3A	MULTI-SECPEP	A375_MHC_IP_R1	1	970.3818969726562	1	969.588013	968.580737	-0.27889	-0.00027041	-0.7789	-0.00075521	-1.0578	-0.0010256	969.5882303890328	124.32	0.25248	124.32	124.19	124.44	0					5	4	2	0	0	0	0.972	1	46813	46813		5.7604	0	1	13288000	+		39063	17000	28661	28894	38067	38067					0.09518958410751566
PLLCLALA	8	Unmodified	_PLLCLALA_					0	0	0			REV__ENST00000505309.1_1_5:42808281-42808491:-|nuORF	REV__ENST00000505309.1_1_5:42808281-42808491:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	407.1278076171875	2	407.248775	812.482997	-0.5783	-0.00023551	-1.6486	-0.00067139	-2.2269	-0.00090691	407.24786168282907	139.96	0.30753	139.96	139.83	140.13	0					8	5	2	0	0	0	0.972	1	53782	53782		0.79363	0	1	1349100	+		39064	22845	28662	28895	38068	38068					0.0692543349036896
PLLDTPIDYIF	11	Unmodified	_PLLDTPIDYIF_					0	0	0			REV__ENSG00000132718|ENST00000368324|SYT11	REV__ENSG00000132718|ENST00000368324|SYT11	MULTI-SECPEP	A375_MHC_IP_R2	2	654.437744140625	2	653.850104	1305.68566	-0.54715	-0.00035775	-3.6498	-0.0023864	-4.197	-0.0027442	654.3487313161223	95.047	0.2544	95.798	95.633	95.888	0.75045					5	4	2	0	0	0	0.99227	1	36093	36093		2.9952	2.033	1	1214700	+		39065	18674	28663	28896	38069	38069					0.045039903059887365
PLLFFIHFP	9	Unmodified	_PLLFFIHFP_					0	0	0			REV__ENSG00000115353|ENST00000305249|TACR1	REV__ENSG00000115353|ENST00000305249|TACR1	MULTI-MSMS	A375_MHC_IP_R1	1	377.5419921875	3	377.551422	1129.63244	0.29412	0.00011105	-2.8254	-0.0010667	-2.5313	-0.00095569	377.88502194590086	50.433	0.25595	50.433	50.305	50.561	0					6	4	2	0	0	0	0.67372	1	17863	17863		5.7319	1.8555	1	918910	+		39066	17876	28664	28897	38070	38070					0.07280702104640113
PLLFFIHFP	9	Unmodified	_PLLFFIHFP_					0	0	0			REV__ENSG00000115353|ENST00000305249|TACR1	REV__ENSG00000115353|ENST00000305249|TACR1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	377.551422	1129.63244	0.29412	0.00011105	-2.8254	-0.0010667	-2.5313	-0.00095569	377.88502194590086	50.433	0.25595	50.433	50.305	50.561	0	0	0	NaN	5.7319	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	918910	+		39067	17876	28664	28897							0.07280702104640113
PLLGEPLTYFL	11	Unmodified	_PLLGEPLTYFL_					0	0	0			REV__ENSG00000166685|ENST00000299886|COG1	REV__ENSG00000166685|ENST00000299886|COG1	MULTI-SECPEP	A375_MHC_IP_R2	2	631.7540283203125	2	631.855189	1261.69583	-0.84196	-0.000532	-1.939	-0.0012252	-2.7809	-0.0017571	632.3573433285727	98.085	0.76511	98.844	98.436	99.201	0.75977					18	14	2	0	0	0	0.90584	1	37231	37231		12.241	4.3305	1	2380500	+		39068	20692	28665	28898	38071	38071					0.07544598031245187
PLLGIELVL	9	Unmodified	_PLLGIELVL_					0	0	0		CALCRL|p.F349L|1|0.36|ENSG00000064989|chr2:187352197-187352197|A/G|missense_variant	CALCRL|p.F349L|1|0.36|ENSG00000064989|chr2:187352197-187352197|A/G|missense_variant	CALCRL|p.F349L|1|0.36|ENSG00000064989|chr2:187352197-187352197|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	484.21484375	2	483.815336	965.616119	-0.50359	-0.00024364	-0.15784	-7.6366E-05	-0.66143	-0.00032001	483.81518351652096	133.77	0.20531	133.93	133.8	134.01	0.16487					6	3	2	0	0	0	0.5339	1	52653	52653		18.135	2.2878	1	3197200			39069	284	28666	28899	38072	38072					0.13193576147875774
PLLGRVGRTSR	11	Unmodified	_PLLGRVGRTSR_					0	0	0		nc|ENSG00000196408|Q8NFA2-4|NOXO1;ENSG00000196408|ENST00000356120|NOXO1;nc|ENSG00000196408|Q8NFA2-2|NOXO1;nc|ENSG00000196408|Q8NFA2|NOXO1	nc|ENSG00000196408|Q8NFA2-4|NOXO1	nc|ENSG00000196408|Q8NFA2-4|NOXO1	MULTI-MSMS	A375_MHC_IP_R1	1	607.6084594726562	2	606.370195	1210.72584	-0.45782	-0.00027761	-0.99459	-0.00060309	-1.4524	-0.0008807	606.369507407255	129.12	1.9312	129.12	128.48	130.41	0					96	37	3	0	0	0	0.73332	1	49682	49682		5.7319	1.4026	1	113470000			39070	9036	28667	28900	38073	38073					0.12890394539772387
PLLGRVGRTSR	11	Unmodified	_PLLGRVGRTSR_					0	0	0		nc|ENSG00000196408|Q8NFA2-4|NOXO1;ENSG00000196408|ENST00000356120|NOXO1;nc|ENSG00000196408|Q8NFA2-2|NOXO1;nc|ENSG00000196408|Q8NFA2|NOXO1	nc|ENSG00000196408|Q8NFA2-4|NOXO1	nc|ENSG00000196408|Q8NFA2-4|NOXO1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	606.370195	1210.72584	-0.45942	-0.00027858	-1.2193	-0.00073932	-1.6787	-0.0010179	606.36932108842	128.91	2.4319	129.15	128.3	130.73	0.23946	0.016444	-6.6447E-05	NaN	5.7319	146	47	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65490000			39071	9036	28667	28900							0.12890394539772387
PLLIVTPNG	9	Unmodified	_PLLIVTPNG_					0	0	0		HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant;ENSG00000128731|ENST00000261609|HERC2;ENST00000568206.1_1_15:28360544-28362081:-|nuORF;ENST00000566635.5_1_15:28356911-28362639:-|nuORF	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	MSMS	A375_MHC_IP_R2	2	462.6804504394531	2	462.28166	922.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.54	1	142.57	142.07	143.07	0.030731								0	0	0	0.15486	1	55723	55723		4.3292	0	1				39072	14109	28668	28901	38074	38074					0.0843954593693752
PLLKEDLP	8	Unmodified	_PLLKEDLP_					0	0	0			REV__nc|ENSG00000113273|P15848-2|ARSB	REV__nc|ENSG00000113273|P15848-2|ARSB	MSMS	A375_MHC_IP_R2	2	462.9248352050781	2	462.773668	923.532783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.08	1	141.12	140.62	141.62	0.04216								0	0	0	0.16876	1	55198	55198		2.8892	0	1		+		39073	17774	28669	28902	38075	38075					0.06795839700043871
PLLKSKLL	8	Unmodified	_PLLKSKLL_					0	0	0			REV__nc|ENSG00000068120|Q13057-2|COASY	REV__nc|ENSG00000068120|Q13057-2|COASY	MULTI-MSMS	A375_MHC_IP_R1	1	456.7181396484375	2	456.318046	910.621539	-0.1765	-8.0542E-05	0.34058	0.00015541	0.16408	7.487E-05	456.31817085747065	63.23	0.41046	63.23	62.966	63.377	0					13	7	2	0	0	0	0.24409	1	22843	22843		63.563	9.9873	1	1576100	+		39074	16539	28670	28903	38076	38076					0.16265299730378047
PLLKSKLL	8	Unmodified	_PLLKSKLL_					0	0	0			REV__nc|ENSG00000068120|Q13057-2|COASY	REV__nc|ENSG00000068120|Q13057-2|COASY	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	456.318046	910.621539	-0.1765	-8.0542E-05	0.34058	0.00015541	0.16408	7.487E-05	456.31817085747065	63.23	0.41046	63.23	62.966	63.377	0	0	0	NaN	63.563	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1576100	+		39075	16539	28670	28903							0.16265299730378047
PLLLKKVKLIP	11	Unmodified	_PLLLKKVKLIP_					0	0	0		ENST00000486291.1_1_2:202262833-202263061:-|nuORF;ENST00000332624.7_1_2:202262293-202264107:-|nuORF	ENST00000486291.1_1_2:202262833-202263061:-|nuORF	ENST00000486291.1_1_2:202262833-202263061:-|nuORF	MSMS	A375_MHC_IP_R2	2	631.4017944335938	2	631.452134	1260.88972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.82	1	102.58	102.08	103.08	0.76428								0	0	0	0.1636	1	38592	38592		0	0	1				39076	10778	28671	28904	38077	38077					0.26970599257970207
PLLLLFLLL	9	Unmodified	_PLLLLFLLL_					0	0	0		nc|ENSG00000148219|O75129-2|ASTN2;nc|ENSG00000148219|O75129-3|ASTN2;ENSG00000148219|ENST00000313400|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2;REV__nc|ENSG00000148219|O75129-2|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	MSMS	A375_MHC_IP_R2	2	352.5747985839844	3	352.24734	1053.72019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.36	1	140.4	139.9	140.9	0.04216								0	0	0	0.15486	1	54949	54949		0	0	1				39077	5725;19619	28672	28905	38078	38078					0.19547902975432407
PLLLLLLLAP	10	Unmodified	_PLLLLLLLAP_					0	0	0		nc|ENSG00000113273|P15848-2|ARSB;ENSG00000113273|ENST00000264914|ARSB	REV__ENSG00000149654|ENST00000537909|CDH22	REV__ENSG00000149654|ENST00000537909|CDH22	MSMS	A375_MHC_IP_R2	2	359.4281005859375	3	359.254494	1074.74165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.673	1	91.407	90.907	91.907	0.7345								0	0	0	0.15637	1	34499	34499		0.15932	0	1		+		39078	19695	28673	28906	38079	38079					0.20727288004104594
PLLLLLRRRR	10	Unmodified	_PLLLLLRRRR_					0	0	0			REV__ENST00000492275.5_1_21:38445580-38480706:+|nuORF	REV__ENST00000492275.5_1_21:38445580-38480706:+|nuORF	MSMS	A375_MHC_IP_R2	2	653.451416015625	2	653.451323	1304.88809	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.49	1	125.79	125.29	126.29	0.2951								0	0	0	0.15585	1	48954	48954		1.8442	0.36234	1		+		39079	23822	28674	28907	38080	38080					0.24784403012563416
PLLLPVCPLP	10	Unmodified	_PLLLPVCPLP_					0	0	0		ENSG00000139718|ENST00000604567|SETD1B;nc|ENSG00000139718|Q9UPS6-2|SETD1B	ENSG00000139718|ENST00000604567|SETD1B	ENSG00000139718|ENST00000604567|SETD1B	MSMS	A375_MHC_IP_R1	1	354.5961608886719	3	354.552435	1060.63547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.065	1	26.065	25.565	26.565	0								0	0	0	0.15508	1	7711	7711		2.086	0	1				39080	5104	28675	28908	38081	38081					0.1075820916714747
PLLPGGAH	8	Unmodified	_PLLPGGAH_					0	0	0			REV__ENST00000325995.7_1_8:124664024-124664426:-|nuORF	REV__ENST00000325995.7_1_8:124664024-124664426:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	762.3316040039062	1	761.43045	760.423173	-0.72351	-0.0005509	-1.6056	-0.0012225	-2.3291	-0.0017734	761.4298973780532	131.29	0.45334	131.29	131.07	131.53	0					19	8	4	0	0	0	0.77686	1	50635	50635		6.3541	0	1	7115500	+		39081	23600	28676	28909	38082	38082					0.03337878871366229
PLLPLQGK	8	Unmodified	_PLLPLQGK_					0	0	0		ENST00000256190.12_1_11:10315695-10315752:-|nuORF	ENST00000256190.12_1_11:10315695-10315752:-|nuORF	ENST00000256190.12_1_11:10315695-10315752:-|nuORF	MSMS	A375_MHC_IP_R2	2	433.28485107421875	2	433.278921	864.543289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.95	1	140.01	139.51	140.51	0.059906								0	0	0	0.16876	1	54807	54807		0.69038	0	1				39082	10235	28677	28910	38083	38083					0.10559867145138924
PLLRHRRREE	10	Unmodified	_PLLRHRRREE_					0	0	0			REV__ENST00000455062.2_1_7:74197704-74203407:+|nuORF	REV__ENST00000455062.2_1_7:74197704-74203407:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	455.0003967285156	3	454.600609	1360.78	-0.037235	-1.6927E-05	-0.90582	-0.00041179	-0.94306	-0.00042871	454.60013652005165	137.1	0.51482	137.21	137.02	137.53	0.11134					15	9	3	0	0	0	0.71245	1	53827	53827		3.5871	2.1319	1	1789900	+		39083	24611	28678	28911	38084	38084					0.11403986691379941
PLLRHRRREE	10	Unmodified	_PLLRHRRREE_					0	0	0			REV__ENST00000455062.2_1_7:74197704-74203407:+|nuORF	REV__ENST00000455062.2_1_7:74197704-74203407:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	454.600609	1360.78	-0.037235	-1.6927E-05	-0.90582	-0.00041179	-0.94306	-0.00042871	454.60013652005165	137.1	0.51482	137.21	137.02	137.53	0.11134	0.055954	-0.00034542	NaN	3.5871	15	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1789900	+		39084	24611	28678	28911							0.11403986691379941
PLLSSARR	8	Unmodified	_PLLSSARR_					0	0	0			REV__ENST00000264249.7_2_2:101033866-101034073:-|nuORF	REV__ENST00000264249.7_2_2:101033866-101034073:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	450.6741943359375	2	450.274701	898.534849	-0.33659	-0.00015156	-0.096299	-4.3361E-05	-0.43289	-0.00019492	450.27459042424033	129.2	1.5169	129.44	129.21	130.73	0.23946					81	29	6	0	0	0	0.77702	1	50747	50747		5.7604	0	1	191800000	+		39085	23234	28679	28912	38085	38085					0.08152313228515595
PLLTSKLT	8	Unmodified	_PLLTSKLT_					0	0	0		ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	MULTI-MSMS	A375_MHC_IP_R1	1	437.1749267578125	2	436.776211	871.537869	0.12155	5.3091E-05	-2.6015	-0.0011363	-2.4799	-0.0010832	436.7750956097418	127.7	1.0134	127.7	127.42	128.43	0					35	19	2	0	0	0	0.77781	1	49218	49218		2.8892	0	1	45916000			39086	4589	28680	28913	38086	38086					0.0969614356264401
PLLTTKRVFWK	11	Unmodified	_PLLTTKRVFWK_					0	0	0		nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS;ENST00000579128.1_1_18:657682-669175:+|nuORF	nc|ENSG00000176890|P04818-2|TYMS	nc|ENSG00000176890|P04818-2|TYMS	MULTI-MSMS	A375_MHC_IP_R1	1	694.8214111328125	2	694.924272	1387.83399	-0.87301	-0.00060668	-0.52595	-0.0003655	-1.399	-0.00097217	694.9240433175963	133.4	0.20438	133.4	133.25	133.46	0					5	3	2	0	0	0	0.73779	1	51399	51399		1.4819	0	1	1909500			39087	8037	28681	28914	38087	38087					0.1555876607033042
PLLVLMPLAL	10	Unmodified	_PLLVLMPLAL_					0	0	0			REV__ENSG00000131068|ENST00000253381|DEFB118	REV__ENSG00000131068|ENST00000253381|DEFB118	MULTI-MSMS	A375_MHC_IP_R2	2	540.3853759765625	2	540.348489	1078.68242	-0.66153	-0.00035745	-0.34	-0.00018372	-1.0015	-0.00054118	540.348281582694	137.12	0.61708	137.23	137.07	137.69	0.11134					20	11	3	0	0	0	0.69947	1	53911	53911		12.532	4.6214	1	3500200	+		39088	18586	28682	28915	38088	38088					0.1462306871826513
PLLVLVDRH	9	Unmodified	_PLLVLVDRH_					0	0	0			REV__ENSG00000153303|ENST00000283309|FRMD1	REV__ENSG00000153303|ENST00000283309|FRMD1	MULTI-MSMS	A375_MHC_IP_R2	2	354.9536437988281	3	354.553715	1060.63931	-0.64424	-0.00022842	-0.31546	-0.00011185	-0.9597	-0.00034026	354.5536049886101	28.41	0.3047	29.089	28.909	29.214	0.67857					15	5	3	0	0	0	0.41879	1	9808	9808		23.79	0	1	13026000	+		39089	19836	28683	28916	38089	38089					0.1114201498521652
PLMFMQIL	8	Unmodified	_PLMFMQIL_					0	0	0		ENST00000367866.6_1_1:167388477-167388615:+|nuORF	ENST00000367866.6_1_1:167388477-167388615:+|nuORF	ENST00000367866.6_1_1:167388477-167388615:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	497.174072265625	2	496.769017	991.523481	-0.25306	-0.00012571	0.64172	0.00031879	0.38866	0.00019307	496.7694627338687	43.454	0.91592	43.454	42.841	43.757	0					27	17	2	0	0	0	0.75322	1	14992	14992		19.439	1.304	1	4545500			39090	11104	28684	28917	38090	38090					0.027380318185123542
PLMGQVEEH	9	Unmodified	_PLMGQVEEH_					0	0	0		ENSG00000196453|ENST00000247930|ZNF777	ENSG00000196453|ENST00000247930|ZNF777	ENSG00000196453|ENST00000247930|ZNF777	MULTI-SECPEP	A375_MHC_IP_R1	1	1039.9404296875	1	1039.48771	1038.48043	0.21065	0.00021897	0.54926	0.00057095	0.75991	0.00078992	1039.488100634284	96.344	2.0756	96.344	95.515	97.59	0					69	40	2	0	0	0	0.76827	1	35726	35726		10.824	0	1	1964700			39091	9043	28685	28918	38091	38091					-0.03727066705209836
PLMGQVEEH	9	Unmodified	_PLMGQVEEH_					0	0	0		ENSG00000196453|ENST00000247930|ZNF777	ENSG00000196453|ENST00000247930|ZNF777	ENSG00000196453|ENST00000247930|ZNF777	MULTI-MATCH	A375_MHC_IP_R2	2		1	1039.48771	1038.48043	0.13832	0.00014378	0.42161	0.00043826	0.55993	0.00058204	1039.4878571667218	95.81	1.7292	96.56	95.735	97.464	0.75045	0.10834	-6.7653E-05	NaN	10.824	53	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2059000			39092	9043	28685	28918							-0.03727066705209836
PLMLLLLGPL	10	Unmodified	_PLMLLLLGPL_					0	0	0		nc|ENSG00000173083|Q9Y251-4|HPSE;nc|ENSG00000173083|Q9Y251-3|HPSE;nc|ENSG00000173083|Q9Y251-2|HPSE;ENSG00000173083|ENST00000311412|HPSE	nc|ENSG00000173083|Q9Y251-4|HPSE	nc|ENSG00000173083|Q9Y251-4|HPSE	MULTI-SECPEP	A375_MHC_IP_R1	1	540.718994140625	2	540.348489	1078.68242	-0.94601	-0.00051117	0.11022	5.9557E-05	-0.83579	-0.00045162	540.3485244484684	137.2	0.51419	137.2	137.03	137.54	0					19	9	3	0	0	0	0.8716	1	52918	52918		12.532	0	1	4069100			39093	7766	28686	28919	38092	38092					0.14623068718287868
PLNFKKRLF	9	Unmodified	_PLNFKKRLF_					0	0	0		ENSG00000010671|ENST00000308731|BTK;nc|ENSG00000010671|Q06187-2|BTK;ENST00000464567.1_1_X:100629364-100630272:-|nuORF	ENSG00000010671|ENST00000308731|BTK	ENSG00000010671|ENST00000308731|BTK	MULTI-SECPEP	A375_MHC_IP_R2	2	582.258544921875	2	581.858401	1161.70225	-0.28196	-0.00016406	-0.34017	-0.00019793	-0.62213	-0.00036199	582.3596908987246	89.139	0.5507	89.871	89.635	90.186	0.7318					22	10	3	0	0	0	0.75466	1	33949	33949		4.3292	0	1	2432500			39094	985	28687	28920	38093	38093					0.12786580773263267
PLNKVVSEAF	10	Unmodified	_PLNKVVSEAF_					0	0	0		DENND2A|p.E897K|1|0.47|ENSG00000146966|chr7:140522077-140522077|C/T|missense_variant	DENND2A|p.E897K|1|0.47|ENSG00000146966|chr7:140522077-140522077|C/T|missense_variant	DENND2A|p.E897K|1|0.47|ENSG00000146966|chr7:140522077-140522077|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	552.70849609375	2	552.308406	1102.60226	-0.6635	-0.00036646	-1.5898	-0.00087808	-2.2533	-0.0012445	552.3081599337413	87.106	0.5078	87.839	87.509	88.017	0.733					29	9	5	0	0	0	0.88918	1	33114	33114		18.146	14.202	1	7453700			39095	734	28688	28921	38094	38094					0.055062986488110255
PLNLKVKKK	9	Unmodified	_PLNLKVKKK_					0	0	0		L1PA12_dup1459|chr14:24645129-24646061:+|2.3378894784149136|0.043402481506214|5.75|453.0|34|3|sense	L1PA12_dup1459|chr14:24645129-24646061:+|2.3378894784149136|0.043402481506214|5.75|453.0|34|3|sense	L1PA12_dup1459|chr14:24645129-24646061:+|2.3378894784149136|0.043402481506214|5.75|453.0|34|3|sense	MSMS	A375_MHC_IP_R1	1	356.6011962890625	3	356.581493	1066.72265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.84	1	35.84	35.34	36.34	0								0	0	0	0.15486	1	11950	11950		4.897	0.36815	1				39096	14266	28689	28922	38095	38095					0.19195751433085206
PLPACHLLT	9	Unmodified	_PLPACHLLT_					0	0	0			REV__ENST00000361722.7_1_17:45789068-45789260:+|nuORF	REV__ENST00000361722.7_1_17:45789068-45789260:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	482.3974304199219	2	482.767863	963.521173	-0.40182	-0.00019399	-0.010213	-4.9304E-06	-0.41204	-0.00019892	482.76795137683666	47.113	1.0184	47.874	47.613	48.632	0.76128					24	19	2	0	0	0	0.74651	1	17715	17715		13.508	0	1	1057500	+		39097	23922	28690	28923	38096	38096					0.03795319405048758
PLPAGERD	8	Unmodified	_PLPAGERD_					0	0	0		chr16:57654133-57655408|96|53.01|0.75|6.14|+|2|ADGRG1,None|1	chr16:57654133-57655408|96|53.01|0.75|6.14|+|2|ADGRG1,None|1	chr16:57654133-57655408|96|53.01|0.75|6.14|+|2|ADGRG1,None|1	MULTI-MSMS	A375_MHC_IP_R1	1	428.12152099609375	2	427.721967	853.429381	-0.13247	-5.666E-05	-0.51079	-0.00021848	-0.64326	-0.00027514	427.72159703229534	75.439	0.55226	75.439	75.211	75.764	0					17	10	2	0	0	0	0.77624	1	27499	27499		8.5933	0	1	2221700			39098	441	28691	28924	38097	38097					-0.0031964768776333585
PLPEPSKPV	9	Unmodified	_PLPEPSKPV_					0	0	0			REV__TRERF1|p.P990L|1|0.15|ENSG00000124496|chr6:42236302-42236302|G/A|missense_variant	REV__TRERF1|p.P990L|1|0.15|ENSG00000124496|chr6:42236302-42236302|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	482.6595153808594	2	482.279118	962.543683	-0.55977	-0.00026997	0.57582	0.00027771	0.016052	7.7416E-06	482.27930380959555	85.451	0.76203	85.451	85.159	85.921	0					17	14	2	0	0	0	0.67221	1	31242	31242		13.508	0	1	1288800	+		39099	28897	28692	28925	38098	38098					0.06091242074330694
PLPEVRRTAR	10	Unmodified	_PLPEVRRTAR_					0	0	0		ENST00000529902.2_1_14:50466771-50470439:-|nuORF	ENST00000529902.2_1_14:50466771-50470439:-|nuORF	ENST00000529902.2_1_14:50466771-50470439:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	598.255615234375	2	597.856921	1193.69929	-0.027236	-1.6283E-05	-0.83856	-0.00050134	-0.86579	-0.00051762	597.8562193083561	127.5	1.1647	127.5	126.61	127.77	0					54	22	4	0	0	0	0.70793	1	48853	48853		8.7454	0	1	51423000			39100	13139	28693	28926	38099	38099					0.11018705648461946
PLPEVRRTAR	10	Unmodified	_PLPEVRRTAR_					0	0	0		ENST00000529902.2_1_14:50466771-50470439:-|nuORF	ENST00000529902.2_1_14:50466771-50470439:-|nuORF	ENST00000529902.2_1_14:50466771-50470439:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1194.6112060546875	1	1194.70657	1193.69929	-0.20411	-0.00024385	-0.38382	-0.00045855	-0.58793	-0.0007024	1194.7062400835046	129.5	0.45686	129.5	129.3	129.75	0					9	8	2	0	0	0	0.71118	1	49724	49724		7.2892	1.0834	1	2877400			39101	13139	28693	28926	38100	38100					0.11018705648461946
PLPEVRRTAR	10	Unmodified	_PLPEVRRTAR_					0	0	0		ENST00000529902.2_1_14:50466771-50470439:-|nuORF	ENST00000529902.2_1_14:50466771-50470439:-|nuORF	ENST00000529902.2_1_14:50466771-50470439:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	598.2562255859375	2	597.856921	1193.69929	-0.51955	-0.00031062	-0.84477	-0.00050505	-1.3643	-0.00081567	597.8562756457691	129.12	1.9816	129.12	128.43	130.41	0					159	38	6	0	0	0	0.70793	1	49824	49824		8.7454	0	1	683170000			39102	13139	28693	28926	38101	38101					0.11018705648461946
PLPEVRRTAR	10	Unmodified	_PLPEVRRTAR_					0	0	0		ENST00000529902.2_1_14:50466771-50470439:-|nuORF	ENST00000529902.2_1_14:50466771-50470439:-|nuORF	ENST00000529902.2_1_14:50466771-50470439:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	598.2559204101562	2	597.856921	1193.69929	-0.57147	-0.00034166	-0.98969	-0.00059169	-1.5612	-0.00093335	597.8562083906181	127.35	1.9229	127.62	126.55	128.48	0.26593					122	37	4	0	0	0	0.70793	1	49748	49748		8.7454	0	1	138350000			39103	13139	28693	28926	38102	38102					0.11018705648461946
PLPEVRRTAR	10	Unmodified	_PLPEVRRTAR_					0	0	0		ENST00000529902.2_1_14:50466771-50470439:-|nuORF	ENST00000529902.2_1_14:50466771-50470439:-|nuORF	ENST00000529902.2_1_14:50466771-50470439:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	597.856921	1193.69929	-0.59942	-0.00035837	-0.99661	-0.00059583	-1.596	-0.0009542	597.8561756837536	128.9	2.3807	129.14	128.45	130.83	0.23946	0.011719	-4.1711E-05	NaN	8.7454	211	46	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	407010000			39104	13139	28693	28926							0.11018705648461946
PLPFFAMS	8	Unmodified	_PLPFFAMS_					0	0	0		ENSG00000161996|ENST00000293879|WDR90;ENST00000553080.1_1_16:716564-717586:+|nuORF;nc|ENSG00000161996|Q96KV7-7|WDR90;ENST00000547407.5_1_16:712941-717586:+|nuORF;ENST00000549024.5_1_16:711101-717586:+|nuORF	ENSG00000161996|ENST00000293879|WDR90	ENSG00000161996|ENST00000293879|WDR90	MSMS	A375_MHC_IP_R1	1	455.1656799316406	2	455.230582	908.446611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.058	1	59.058	58.558	59.558	0								0	0	0	0.16876	1	21232	21232		15.768	4.6538	1				39105	6500	28694	28927	38103	38103					-0.011274434063125227
PLPHPDPAP	9	Unmodified	_PLPHPDPAP_					0	0	0		ENST00000596772.5_1_19:8575577-8575721:-|nuORF	ENST00000596772.5_1_19:8575577-8575721:-|nuORF	ENST00000596772.5_1_19:8575577-8575721:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	469.9925537109375	2	470.747985	939.481417	-0.3962	-0.00018651	0.14976	7.0498E-05	-0.24644	-0.00011601	470.74823052866765	34.753	0.45544	34.753	34.456	34.912	0					13	8	3	0	0	0	0.71541	1	11428	11428		11.64	4.9171	1	2461100			39106	13841	28695	28928	38104	38104					0.009255157259872249
PLPHPDPAP	9	Unmodified	_PLPHPDPAP_					0	0	0		ENST00000596772.5_1_19:8575577-8575721:-|nuORF	ENST00000596772.5_1_19:8575577-8575721:-|nuORF	ENST00000596772.5_1_19:8575577-8575721:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	470.747985	939.481417	-1.1027	-0.00051909	0.63923	0.00030092	-0.46346	-0.00021817	470.74826702598733	33.836	0.50507	34.588	34.298	34.803	0.75225	-0.082527	0.00017216	NaN	7.2892	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1595700			39107	13841	28695	28928							0.009255157259872249
PLPLMFPV	8	Unmodified	_PLPLMFPV_					0	0	0		ENST00000313234.9_1_12:52565184-52565452:-|nuORF	ENST00000313234.9_1_12:52565184-52565452:-|nuORF	ENST00000313234.9_1_12:52565184-52565452:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	457.6636047363281	2	457.264425	912.514297	-0.29485	-0.00013483	-1.0614	-0.00048532	-1.3562	-0.00062015	457.26383786909804	130.62	0.45761	130.83	130.7	131.16	0.2142					14	8	2	0	0	0	0.77781	1	51389	51389		2.8892	0	1	23645000			39108	10642	28696	28929	38105	38105					0.05454006524496435
PLPPDGQW	8	Unmodified	_PLPPDGQW_					0	0	0			REV__ENST00000339488.8_2_6:48036008-48036398:-|nuORF	REV__ENST00000339488.8_2_6:48036008-48036398:-|nuORF	MSMS	A375_MHC_IP_R2	2	455.1654968261719	2	455.226885	908.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.993	1	56.743	56.243	57.243	0.75015								0	0	0	0.16876	1	21158	21158		11.114	0	1		+		39109	23711	28697	28930	38106	38106					-0.01866459682378263
PLPPPPPPP	9	Unmodified	_PLPPPPPPP_					0	0	0		nc|ENSG00000175785|Q86XR5-2|PRIMA1;nc|ENSG00000117560|P48023-2|FASLG;ENST00000597121.5_1_19:50086773-50093643:+|nuORF;ENSG00000126460|ENST00000246794|PRRG2;ENSG00000176182|ENST00000322217|MYPOP;ENSG00000117560|ENST00000367721|FASLG;ENSG00000146083|ENST00000274811|RNF44;nc|ENSG00000146083|Q7L0R7-2|RNF44;ENSG00000175785|ENST00000393140|PRIMA1;ENST00000379565.7_1_X:20227482-20284914:-|nuORF;ENST00000573523.5_1_17:4574736-4578861:-|nuORF;ZBTB7B|p.R195W|1|0.22|ENSG00000160685|chr1:155015243-155015243|C/T|missense_variant;ENST00000508096.1_1_10:126605730-126631034:+|nuORF;ENST00000361272.8_2_8:17102747-17104366:-|nuORF;ENST00000508478.1_1_5:175957081-175957609:-|nuORF;nc|ENSG00000110076|P58401|NRXN2;ENST00000596700.5_1_19:50084718-50093643:+|nuORF;nc|ENSG00000170234|Q96N64-2|PWWP2A;nc|ENSG00000170234|Q96N64-3|PWWP2A;ENSG00000170234|ENST00000307063|PWWP2A;ENSG00000259956|ENST00000563281|RBM15B;PRIMA1|p.P57S|1|0.33|ENSG00000175785|chr14:93779236-93779236|G/A|missense_variant;JMY|p.P818L|1|0.64|ENSG00000152409|chr5:79314645-79314645|C/T|missense_variant;ENSG00000139718|ENST00000604567|SETD1B;nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000113448|ENST00000340635|PDE4D;ENSG00000100312|ENST00000216139|ACR;ENSG00000173166|ENST00000319170|RAPH1;ENSG00000175073|ENST00000310421|VCPIP1;nc|ENSG00000248905|Q68DA7-5|FMN1;chr15:33008075-33153048|430|22.15|0.56|5.32|-|ENST00000561249|FMN1,FMN1;ENSG00000248905|ENST00000616417|FMN1;nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000124496|ENST00000695948|TRERF1;ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B;ENSG00000138771|ENST00000296043|SHROOM3;ENSG00000141456|ENST00000572293|PELP1;ENSG00000160685|ENST00000535420|ZBTB7B;nc|ENSG00000160685|O15156-2|ZBTB7B;ENSG00000204334|ENST00000697325|ERICH2;nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000009694|Q9UKZ4-2|TENM1;ENSG00000009694|ENST00000371130|TENM1;ENSG00000152217|ENST00000649279|SETBP1;ENSG00000188779|ENST00000380035|SKOR1;nc|ENSG00000188779|P84550-3|SKOR1	REV__ENSG00000131504|ENST00000389054|DIAPH1;REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000139718|ENST00000604567|SETD1B;REV__ENSG00000170807|ENST00000458573|LMOD2;ENSG00000113448|ENST00000340635|PDE4D;ENSG00000100312|ENST00000216139|ACR;REV__nc|ENSG00000091656|Q86UP3|ZFHX4;REV__ENSG00000140836|ENST00000268489|ZFHX3;ENSG00000173166|ENST00000319170|RAPH1;REV__nc|ENSG00000146122|Q86T65-4|DAAM2;REV__nc|ENSG00000135250|P78362|SRPK2;ENSG00000175073|ENST00000310421|VCPIP1;REV__ENSG00000145414|ENST00000274054|NAF1;REV__ENSG00000164916|ENST00000328914|FOXK1;REV__nc|ENSG00000248905|Q68DA7-5|FMN1;nc|ENSG00000248905|Q68DA7-5|FMN1;nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000132510|ENST00000448097|KDM6B;ENSG00000138771|ENST00000296043|SHROOM3;ENSG00000141456|ENST00000572293|PELP1;ENSG00000160685|ENST00000535420|ZBTB7B;ENSG00000204334|ENST00000697325|ERICH2;nc|ENSG00000170004|Q12873-3|CHD3;REV__ENSG00000248905|ENST00000616417|FMN1;REV__nc|ENSG00000048991|Q15032-2|R3HDM1;REV__ENSG00000131061|ENST00000375200|ZNF341;REV__ENSG00000132510|ENST00000448097|KDM6B;REV__nc|ENSG00000139734|Q9NSV4-2|DIAPH3;REV__ENSG00000141431|ENST00000269197|ASXL3;REV__ENSG00000157827|ENST00000288670|FMNL2;REV__ENSG00000173166|ENST00000319170|RAPH1;REV__ENSG00000187017|ENST00000645284|ESPN;REV__ENSG00000203485|ENST00000392634|INF2;REV__ENSG00000274209|ENST00000620264|ANTXRL;REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L;REV__nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000009694|Q9UKZ4-2|TENM1;ENSG00000152217|ENST00000649279|SETBP1;ENSG00000188779|ENST00000380035|SKOR1;REV__ENSG00000100592|ENST00000360909|DAAM1;REV__ENSG00000152217|ENST00000649279|SETBP1;REV__RBM15|p.L561*|1|0.15|ENSG00000162775|chr1:110341085-110341085|T/-|frameshift_variant;REV__ENSG00000175073|ENST00000310421|VCPIP1;REV__ENSG00000215045|ENST00000457091|GRID2IP	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-MSMS	A375_MHC_IP_R1	1	455.1653747558594	2	454.765646	907.516739	-0.19457	-8.8484E-05	0.17128	7.7894E-05	-0.023287	-1.059E-05	454.7656322524315	57.15	6.2045	57.15	55.33	61.534	0					188	121	3	0	0	0	0.011986	2	20512	20512;21253		93.763	0	1	2765600			39110	21972;14761;16955;5104;22462;7773;21198;15710;27349;7930;27527;19232;969;3152;17106;19472;19178;18659;3907;4416;5031;5243;21322;2157;21020;18585;22955;22004;27157;18611;9430;19264;16377;6431;437;20526;18836;20046;22669;5951;8934;19518;19794;20308	28698	28931	38107;38108	38107					0.05928178253805072
PLPPPPPPP	9	Unmodified	_PLPPPPPPP_					0	0	0		nc|ENSG00000175785|Q86XR5-2|PRIMA1;nc|ENSG00000117560|P48023-2|FASLG;ENST00000597121.5_1_19:50086773-50093643:+|nuORF;ENSG00000126460|ENST00000246794|PRRG2;ENSG00000176182|ENST00000322217|MYPOP;ENSG00000117560|ENST00000367721|FASLG;ENSG00000146083|ENST00000274811|RNF44;nc|ENSG00000146083|Q7L0R7-2|RNF44;ENSG00000175785|ENST00000393140|PRIMA1;ENST00000379565.7_1_X:20227482-20284914:-|nuORF;ENST00000573523.5_1_17:4574736-4578861:-|nuORF;ZBTB7B|p.R195W|1|0.22|ENSG00000160685|chr1:155015243-155015243|C/T|missense_variant;ENST00000508096.1_1_10:126605730-126631034:+|nuORF;ENST00000361272.8_2_8:17102747-17104366:-|nuORF;ENST00000508478.1_1_5:175957081-175957609:-|nuORF;nc|ENSG00000110076|P58401|NRXN2;ENST00000596700.5_1_19:50084718-50093643:+|nuORF;nc|ENSG00000170234|Q96N64-2|PWWP2A;nc|ENSG00000170234|Q96N64-3|PWWP2A;ENSG00000170234|ENST00000307063|PWWP2A;ENSG00000259956|ENST00000563281|RBM15B;PRIMA1|p.P57S|1|0.33|ENSG00000175785|chr14:93779236-93779236|G/A|missense_variant;JMY|p.P818L|1|0.64|ENSG00000152409|chr5:79314645-79314645|C/T|missense_variant;ENSG00000139718|ENST00000604567|SETD1B;nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000113448|ENST00000340635|PDE4D;ENSG00000100312|ENST00000216139|ACR;ENSG00000173166|ENST00000319170|RAPH1;ENSG00000175073|ENST00000310421|VCPIP1;nc|ENSG00000248905|Q68DA7-5|FMN1;chr15:33008075-33153048|430|22.15|0.56|5.32|-|ENST00000561249|FMN1,FMN1;ENSG00000248905|ENST00000616417|FMN1;nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000124496|ENST00000695948|TRERF1;ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B;ENSG00000138771|ENST00000296043|SHROOM3;ENSG00000141456|ENST00000572293|PELP1;ENSG00000160685|ENST00000535420|ZBTB7B;nc|ENSG00000160685|O15156-2|ZBTB7B;ENSG00000204334|ENST00000697325|ERICH2;nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000009694|Q9UKZ4-2|TENM1;ENSG00000009694|ENST00000371130|TENM1;ENSG00000152217|ENST00000649279|SETBP1;ENSG00000188779|ENST00000380035|SKOR1;nc|ENSG00000188779|P84550-3|SKOR1	REV__ENSG00000131504|ENST00000389054|DIAPH1;REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000139718|ENST00000604567|SETD1B;REV__ENSG00000170807|ENST00000458573|LMOD2;ENSG00000113448|ENST00000340635|PDE4D;ENSG00000100312|ENST00000216139|ACR;REV__nc|ENSG00000091656|Q86UP3|ZFHX4;REV__ENSG00000140836|ENST00000268489|ZFHX3;ENSG00000173166|ENST00000319170|RAPH1;REV__nc|ENSG00000146122|Q86T65-4|DAAM2;REV__nc|ENSG00000135250|P78362|SRPK2;ENSG00000175073|ENST00000310421|VCPIP1;REV__ENSG00000145414|ENST00000274054|NAF1;REV__ENSG00000164916|ENST00000328914|FOXK1;REV__nc|ENSG00000248905|Q68DA7-5|FMN1;nc|ENSG00000248905|Q68DA7-5|FMN1;nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000132510|ENST00000448097|KDM6B;ENSG00000138771|ENST00000296043|SHROOM3;ENSG00000141456|ENST00000572293|PELP1;ENSG00000160685|ENST00000535420|ZBTB7B;ENSG00000204334|ENST00000697325|ERICH2;nc|ENSG00000170004|Q12873-3|CHD3;REV__ENSG00000248905|ENST00000616417|FMN1;REV__nc|ENSG00000048991|Q15032-2|R3HDM1;REV__ENSG00000131061|ENST00000375200|ZNF341;REV__ENSG00000132510|ENST00000448097|KDM6B;REV__nc|ENSG00000139734|Q9NSV4-2|DIAPH3;REV__ENSG00000141431|ENST00000269197|ASXL3;REV__ENSG00000157827|ENST00000288670|FMNL2;REV__ENSG00000173166|ENST00000319170|RAPH1;REV__ENSG00000187017|ENST00000645284|ESPN;REV__ENSG00000203485|ENST00000392634|INF2;REV__ENSG00000274209|ENST00000620264|ANTXRL;REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L;REV__nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000009694|Q9UKZ4-2|TENM1;ENSG00000152217|ENST00000649279|SETBP1;ENSG00000188779|ENST00000380035|SKOR1;REV__ENSG00000100592|ENST00000360909|DAAM1;REV__ENSG00000152217|ENST00000649279|SETBP1;REV__RBM15|p.L561*|1|0.15|ENSG00000162775|chr1:110341085-110341085|T/-|frameshift_variant;REV__ENSG00000175073|ENST00000310421|VCPIP1;REV__ENSG00000215045|ENST00000457091|GRID2IP	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MSMS	A375_MHC_IP_R1	1	454.5835266113281	2	454.765646	907.516739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.611	1	64.611	64.111	65.111	0								0	0	0	0.14459	1	23381	23381		28.173	0	1				39111	21972;14761;16955;5104;22462;7773;21198;15710;27349;7930;27527;19232;969;3152;17106;19472;19178;18659;3907;4416;5031;5243;21322;2157;21020;18585;22955;22004;27157;18611;9430;19264;16377;6431;437;20526;18836;20046;22669;5951;8934;19518;19794;20308	28698	28931	38109	38109					0.05928178253805072
PLPPPPPPP	9	Unmodified	_PLPPPPPPP_					0	0	0		nc|ENSG00000175785|Q86XR5-2|PRIMA1;nc|ENSG00000117560|P48023-2|FASLG;ENST00000597121.5_1_19:50086773-50093643:+|nuORF;ENSG00000126460|ENST00000246794|PRRG2;ENSG00000176182|ENST00000322217|MYPOP;ENSG00000117560|ENST00000367721|FASLG;ENSG00000146083|ENST00000274811|RNF44;nc|ENSG00000146083|Q7L0R7-2|RNF44;ENSG00000175785|ENST00000393140|PRIMA1;ENST00000379565.7_1_X:20227482-20284914:-|nuORF;ENST00000573523.5_1_17:4574736-4578861:-|nuORF;ZBTB7B|p.R195W|1|0.22|ENSG00000160685|chr1:155015243-155015243|C/T|missense_variant;ENST00000508096.1_1_10:126605730-126631034:+|nuORF;ENST00000361272.8_2_8:17102747-17104366:-|nuORF;ENST00000508478.1_1_5:175957081-175957609:-|nuORF;nc|ENSG00000110076|P58401|NRXN2;ENST00000596700.5_1_19:50084718-50093643:+|nuORF;nc|ENSG00000170234|Q96N64-2|PWWP2A;nc|ENSG00000170234|Q96N64-3|PWWP2A;ENSG00000170234|ENST00000307063|PWWP2A;ENSG00000259956|ENST00000563281|RBM15B;PRIMA1|p.P57S|1|0.33|ENSG00000175785|chr14:93779236-93779236|G/A|missense_variant;JMY|p.P818L|1|0.64|ENSG00000152409|chr5:79314645-79314645|C/T|missense_variant;ENSG00000139718|ENST00000604567|SETD1B;nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000113448|ENST00000340635|PDE4D;ENSG00000100312|ENST00000216139|ACR;ENSG00000173166|ENST00000319170|RAPH1;ENSG00000175073|ENST00000310421|VCPIP1;nc|ENSG00000248905|Q68DA7-5|FMN1;chr15:33008075-33153048|430|22.15|0.56|5.32|-|ENST00000561249|FMN1,FMN1;ENSG00000248905|ENST00000616417|FMN1;nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000124496|ENST00000695948|TRERF1;ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B;ENSG00000138771|ENST00000296043|SHROOM3;ENSG00000141456|ENST00000572293|PELP1;ENSG00000160685|ENST00000535420|ZBTB7B;nc|ENSG00000160685|O15156-2|ZBTB7B;ENSG00000204334|ENST00000697325|ERICH2;nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000009694|Q9UKZ4-2|TENM1;ENSG00000009694|ENST00000371130|TENM1;ENSG00000152217|ENST00000649279|SETBP1;ENSG00000188779|ENST00000380035|SKOR1;nc|ENSG00000188779|P84550-3|SKOR1	REV__ENSG00000131504|ENST00000389054|DIAPH1;REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000139718|ENST00000604567|SETD1B;REV__ENSG00000170807|ENST00000458573|LMOD2;ENSG00000113448|ENST00000340635|PDE4D;ENSG00000100312|ENST00000216139|ACR;REV__nc|ENSG00000091656|Q86UP3|ZFHX4;REV__ENSG00000140836|ENST00000268489|ZFHX3;ENSG00000173166|ENST00000319170|RAPH1;REV__nc|ENSG00000146122|Q86T65-4|DAAM2;REV__nc|ENSG00000135250|P78362|SRPK2;ENSG00000175073|ENST00000310421|VCPIP1;REV__ENSG00000145414|ENST00000274054|NAF1;REV__ENSG00000164916|ENST00000328914|FOXK1;REV__nc|ENSG00000248905|Q68DA7-5|FMN1;nc|ENSG00000248905|Q68DA7-5|FMN1;nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000132510|ENST00000448097|KDM6B;ENSG00000138771|ENST00000296043|SHROOM3;ENSG00000141456|ENST00000572293|PELP1;ENSG00000160685|ENST00000535420|ZBTB7B;ENSG00000204334|ENST00000697325|ERICH2;nc|ENSG00000170004|Q12873-3|CHD3;REV__ENSG00000248905|ENST00000616417|FMN1;REV__nc|ENSG00000048991|Q15032-2|R3HDM1;REV__ENSG00000131061|ENST00000375200|ZNF341;REV__ENSG00000132510|ENST00000448097|KDM6B;REV__nc|ENSG00000139734|Q9NSV4-2|DIAPH3;REV__ENSG00000141431|ENST00000269197|ASXL3;REV__ENSG00000157827|ENST00000288670|FMNL2;REV__ENSG00000173166|ENST00000319170|RAPH1;REV__ENSG00000187017|ENST00000645284|ESPN;REV__ENSG00000203485|ENST00000392634|INF2;REV__ENSG00000274209|ENST00000620264|ANTXRL;REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L;REV__nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000009694|Q9UKZ4-2|TENM1;ENSG00000152217|ENST00000649279|SETBP1;ENSG00000188779|ENST00000380035|SKOR1;REV__ENSG00000100592|ENST00000360909|DAAM1;REV__ENSG00000152217|ENST00000649279|SETBP1;REV__RBM15|p.L561*|1|0.15|ENSG00000162775|chr1:110341085-110341085|T/-|frameshift_variant;REV__ENSG00000175073|ENST00000310421|VCPIP1;REV__ENSG00000215045|ENST00000457091|GRID2IP	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-MSMS	A375_MHC_IP_R2	2	455.165283203125	2	454.765646	907.516739	-0.4648	-0.00021138	0.030331	1.3793E-05	-0.43447	-0.00019758	454.76556640403317	56.296	5.5889	57.046	55.269	60.858	0.75015					146	109	3	0	0	0	0.011986	1	21392	21392		93.763	0	1	3707800			39112	21972;14761;16955;5104;22462;7773;21198;15710;27349;7930;27527;19232;969;3152;17106;19472;19178;18659;3907;4416;5031;5243;21322;2157;21020;18585;22955;22004;27157;18611;9430;19264;16377;6431;437;20526;18836;20046;22669;5951;8934;19518;19794;20308	28698	28931	38110	38110					0.05928178253805072
PLPPPTLG	8	Unmodified	_PLPPPTLG_					0	0	0			REV__ENST00000471097.1_1_6:37401045-37404113:+|nuORF	REV__ENST00000471097.1_1_6:37401045-37404113:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	396.6086120605469	2	396.236722	790.45889	-0.18076	-7.1623E-05	0.069567	2.7565E-05	-0.11119	-4.4058E-05	396.2369109566297	45.324	0.35528	46.089	45.897	46.252	0.76518					8	6	2	0	0	0	0.90224	1	16942	16942		19.439	0	1	842940	+		39113	25112	28699	28932	38111	38111					0.055279163283898924
PLPPRNRA	8	Unmodified	_PLPPRNRA_					0	0	0			REV__nc|ENSG00000120802|P42166|TMPO	REV__nc|ENSG00000120802|P42166|TMPO	MULTI-SECPEP	A375_MHC_IP_R1	1	461.1746826171875	2	460.774868	919.535184	-0.5896	-0.00027167	0.14992	6.908E-05	-0.43968	-0.00020259	460.77495584644794	140.47	0.41377	140.47	140.29	140.7	0					10	7	2	0	0	0	0.972	1	53967	53967		0	0	1	1468800	+		39114	27197	28700	28933	38112	38112					0.07219732948362889
PLPPSRDG	8	Unmodified	_PLPPSRDG_					0	0	0		ENST00000589429.5_3_19:36233501-36235273:-|nuORF	ENST00000589429.5_3_19:36233501-36235273:-|nuORF	ENST00000589429.5_3_19:36233501-36235273:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	420.1239013671875	2	419.72451	837.434466	0.1376	5.7755E-05	0.70151	0.00029444	0.83911	0.00035219	419.72385965674823	103.67	4.0067	103.67	100.53	104.54	0					126	78	3	0	0	0	0.972	1	38084	38084		0.6015	0	1	3322700			39115	13774	28701	28934	38113	38113					0.009246561748568638
PLPPSRDG	8	Unmodified	_PLPPSRDG_					0	0	0		ENST00000589429.5_3_19:36233501-36235273:-|nuORF	ENST00000589429.5_3_19:36233501-36235273:-|nuORF	ENST00000589429.5_3_19:36233501-36235273:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	420.1790771484375	2	419.72451	837.434466	-0.06833	-2.868E-05	-1.0762	-0.00045171	-1.1445	-0.00048039	419.72360177032266	103.06	0.66182	103.83	103.53	104.19	0.76428					30	12	3	0	0	0	0.972	1	38937	38937		2.3027	0	1	8663900			39116	13774	28701	28934	38114	38114					0.009246561748568638
PLPQDIGEWY	10	Unmodified	_PLPQDIGEWY_					0	0	0			REV__nc|ENSG00000100889|Q16822-3|PCK2;REV__nc|ENSG00000100889|Q16822-2|PCK2	REV__nc|ENSG00000100889|Q16822-3|PCK2	MULTI-SECPEP	A375_MHC_IP_R2	2	406.93304443359375	3	406.532756	1216.57644	-0.0070393	-2.8617E-06	0.031844	1.2946E-05	0.024805	1.0084E-05	406.5328733223119	72.977	0.51003	73.713	73.48	73.99	0.7354					19	9	3	0	0	0	0.93615	1	27730	27730		3.8763	0	1	1775400	+		39117	17127;27146	28702	28935	38115	38115					-0.023185955934650337
PLPRGRGD	8	Unmodified	_PLPRGRGD_					0	0	0			REV__ENSG00000131899|ENST00000316843|LLGL1	REV__ENSG00000131899|ENST00000316843|LLGL1	MULTI-MSMS	A375_MHC_IP_R2	2	867.5558471679688	1	867.479525	866.472249	-0.51681	-0.00044832	0.33629	0.00029173	-0.18052	-0.0001566	867.4797270096986	108.69	2.2933	109.44	108.65	110.95	0.74683					77	44	2	0	0	0	0.77797	1	41334	41334		2.3027	0	1	3520700	+		39118	18626	28703	28936	38116	38116					0.03367167160342888
PLPRGRGD	8	Unmodified	_PLPRGRGD_					0	0	0			REV__ENSG00000131899|ENST00000316843|LLGL1	REV__ENSG00000131899|ENST00000316843|LLGL1	MULTI-MSMS	A375_MHC_IP_R2	2	434.64324951171875	2	434.243401	866.472249	-0.17925	-7.7838E-05	0.16532	7.1788E-05	-0.013931	-6.0494E-06	434.24339750099534	108.73	3.2105	109.48	108.4	111.61	0.74684					131	62	3	0	0	0	0.77797	1	41381	41381		2.3027	0	1	26795000	+		39119	18626	28703	28936	38117	38117					0.03367167160342888
PLPRGRGD	8	Unmodified	_PLPRGRGD_					0	0	0			REV__ENSG00000131899|ENST00000316843|LLGL1	REV__ENSG00000131899|ENST00000316843|LLGL1	MULTI-MATCH	A375_MHC_IP_R1	1		1	867.479525	866.472249	-0.083666	-7.2579E-05	0.21177	0.00018371	0.12811	0.00011113	867.4795535426232	109.39	2.2384	109.39	108.61	110.85	0	-0.0244	-5.7581E-05	NaN	2.3027	72	43	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3552800	+		39120	18626	28703	28936							0.03367167160342888
PLPRGRGD	8	Unmodified	_PLPRGRGD_					0	0	0			REV__ENSG00000131899|ENST00000316843|LLGL1	REV__ENSG00000131899|ENST00000316843|LLGL1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	867.479525	866.472249	-0.51681	-0.00044832	0.33629	0.00029173	-0.18052	-0.0001566	867.4797270096986	108.69	2.2933	109.44	108.65	110.95	0.74683	0.0244	5.0434E-05	NaN	2.3027	77	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3520700	+		39121	18626	28703	28936							0.03367167160342888
PLPRRPRRRRR	11	Unmodified	_PLPRRPRRRRR_					0	0	0		ENST00000373045.10_1_1:38259693-38260377:+|nuORF	ENST00000373045.10_1_1:38259693-38260377:+|nuORF	ENST00000373045.10_1_1:38259693-38260377:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	505.66278076171875	3	505.994176	1514.9607	-0.63466	-0.00032113	-1.2106	-0.00061254	-1.8452	-0.00093367	506.32637654544874	91.9	0.30201	92.637	92.481	92.783	0.73718					7	5	2	0	0	0	1.0015	1	34946	34946		0.094841	0	1	574730			39122	11220	28704	28937	38118	38118					0.22381549858687322
PLPTLFGNNH	10	Unmodified	_PLPTLFGNNH_					0	0	0		nc|ENSG00000072121|Q68DK2-3|ZFYVE26;ENST00000394455.6_1_14:68196461-68236507:-|nuORF;nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26	nc|ENSG00000072121|Q68DK2-3|ZFYVE26;nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MSMS	A375_MHC_IP_R2	2	370.92938232421875	3	370.529458	1108.56654	0.022835	8.4609E-06	-0.34063	-0.00012621	-0.3178	-0.00011775	370.52942643963655	34.236	0.86247	34.988	34.702	35.565	0.75225					23	10	3	0	0	0	0.71455	1	12329	12329		5.7834	3.2849	1	9566100			39123	1530;11451	28705	28938	38119	38119					0.016602611918187904
PLPVDTTQF	9	Unmodified	_PLPVDTTQF_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2;REV__FSIP2|p.T6548Lfs*12|1|0.3|ENSG00000188738|chr2:185808944-185808944|A/-|frameshift_variant	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	508.6759338378906	2	509.266207	1016.51786	-0.72174	-0.00036756	-0.69311	-0.00035298	-1.4148	-0.00072054	509.26589000247577	108.44	0.25449	109.2	109.07	109.32	0.75436					7	4	2	0	0	0	0.55359	1	40932	40932		28.487	0	1	426410	+		39124	22110;26655	28706	28939	38120	38120					0.01026347832043939
PLPVLLLLLA	10	Unmodified	_PLPVLLLLLA_					0	0	0		ENSG00000170891|ENST00000307746|CYTL1	ENSG00000170891|ENST00000307746|CYTL1	ENSG00000170891|ENST00000307746|CYTL1	MSMS	A375_MHC_IP_R2	2	531.3910522460938	2	531.370278	1060.726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.905	1	87.638	87.138	88.138	0.733								0	0	0	0.15642	1	33050	33050		0	0	1				39125	7554	28707	28940	38121	38121					0.1980700148710639
PLPYDSDC	8	Unmodified	_PLPYDSDC_					0	0	0		nc|ENSG00000266074|Q9P281|BAHCC1;ENSG00000266074|ENST00000675386|BAHCC1	nc|ENSG00000266074|Q9P281|BAHCC1	nc|ENSG00000266074|Q9P281|BAHCC1	MSMS	A375_MHC_IP_R1	1	455.1659240722656	2	455.186568	908.358584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.768	1	57.768	57.268	58.268	0								0	0	0	0.16876	1	20734	20734		6.3541	0.59368	1				39126	14934	28708	28941	38122	38122					-0.09926108787601606
PLQGFKAL	8	Unmodified	_PLQGFKAL_					0	0	0		ENSG00000108854|ENST00000262435|SMURF2;ENST00000582081.5_1_17:62541968-62590137:-|nuORF;ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1	ENSG00000108854|ENST00000262435|SMURF2;ENSG00000198742|ENST00000361368|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	MULTI-MSMS	A375_MHC_IP_R1	1	437.6630859375	2	437.263271	872.511988	-0.14573	-6.372E-05	-0.0040437	-1.7682E-06	-0.14977	-6.5488E-05	437.2630903614288	74.068	1.2173	74.068	73.386	74.604	0					48	23	3	0	0	0	0.48378	1	26902	26902		49.669	11.518	1	2824600			39127	2846;9313	28709	28942	38123	38123					0.07063294111037521
PLQLGDGKKV	10	Unmodified	_PLQLGDGKKV_					0	0	0			REV__nc|ENSG00000157087|Q01814-3|ATP2B2	REV__nc|ENSG00000157087|Q01814-3|ATP2B2	MULTI-SECPEP	A375_MHC_IP_R1	1	528.197998046875	2	527.816399	1053.61824	-0.25537	-0.00013479	-0.079129	-4.1766E-05	-0.33449	-0.00017655	527.8163438726016	45.523	0.35273	45.523	45.334	45.687	0					12	6	2	0	0	0	0.58856	1	15926	15926		34.932	5.8505	1	3170100	+		39128	20010	28710	28943	38124	38124					0.09358004885712035
PLQNRFVRL	9	Unmodified	_PLQNRFVRL_					0	0	0			REV__nc|ENSG00000071994|Q16342-5|PDCD2	REV__nc|ENSG00000071994|Q16342-5|PDCD2	MULTI-SECPEP	A375_MHC_IP_R1	1	382.27264404296875	3	381.564614	1141.67201	0.33763	0.00012883	0.075782	2.8916E-05	0.41341	0.00015774	381.56462946070764	31.895	0.30596	31.895	31.718	32.024	0					8	5	2	0	0	0	0.74875	1	10278	10278		15.248	1.0303	1	1713000	+		39129	16592	28711	28944	38125	38125					0.10684222108079666
PLQQVKKRELY	11	Unmodified	_PLQQVKKRELY_					0	0	0			REV__nc|ENSG00000146285|Q8N228-2|SCML4	REV__nc|ENSG00000146285|Q8N228-2|SCML4	MULTI-MSMS	A375_MHC_IP_R2	2	467.6750183105469	3	467.945271	1400.81398	-0.43674	-0.00020437	-0.68716	-0.00032155	-1.1239	-0.00052592	467.9446638759453	143.06	1.6727	143.09	141.77	143.45	0.030731					43	32	2	0	0	0	0.73795	1	55941	55941		0.45452	0	1	3649400	+		39130	19527	28712	28945	38126	38126					0.12960970339781852
PLQSEKLKF	9	Unmodified	_PLQSEKLKF_					0	0	0			REV__ENSG00000139055|ENST00000266397|ERP27	REV__ENSG00000139055|ENST00000266397|ERP27	MULTI-MSMS	A375_MHC_IP_R2	2	1089.8619384765625	1	1089.63027	1088.623	0.13961	0.00015212	-2.2186	-0.0024174	-2.0789	-0.0022653	1089.6261641480326	125.89	0.86029	126.18	125.72	126.58	0.2951					43	16	4	0	0	0	0.6898	1	49200	49200		7.9102	0.62092	1	26093000	+		39131	19131	28713	28946	38127	38127					0.08222889028479585
PLQYYHYTEQP	11	Unmodified	_PLQYYHYTEQP_					0	0	0			REV__ENSG00000100926|ENST00000261789|TM9SF1	REV__ENSG00000100926|ENST00000261789|TM9SF1	MSMS	A375_MHC_IP_R2	2	719.799072265625	2	719.835517	1437.65648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.88	1	124.21	123.71	124.71	0.32969								0	0	0	0.16191	1	47730	47730		8.7454	2.0222	1		+		39132	17130	28714	28947	38128	38128					-0.0448415399030182
PLRFWILF	8	Unmodified	_PLRFWILF_					0	0	0			REV__ENST00000305560.10_1_15:45694581-45694656:+|nuORF	REV__ENST00000305560.10_1_15:45694581-45694656:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1091.67578125	1	1091.64005	1090.63277	0.34456	0.00037613	-0.79288	-0.00086554	-0.44832	-0.0004894	1091.639959552299	126.21	0.50468	126.21	126	126.51	0					15	9	2	0	0	0	0.77624	1	48113	48113		8.5933	3.8373	1	16377000	+		39133	23461	28715	28948	38129	38129					0.09108121824510818
PLRFWILF	8	Unmodified	_PLRFWILF_					0	0	0			REV__ENST00000305560.10_1_15:45694581-45694656:+|nuORF	REV__ENST00000305560.10_1_15:45694581-45694656:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	1091.64005	1090.63277	0.34456	0.00037613	-0.79288	-0.00086554	-0.44832	-0.0004894	1091.639959552299	126.21	0.50468	126.21	126	126.51	0	0	0	NaN	8.5933	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16377000	+		39134	23461	28715	28948							0.09108121824510818
PLRHQRRNYRL	11	Unmodified	_PLRHQRRNYRL_					0	0	0			REV__ENST00000600534.1_1_19:59084484-59085060:+|nuORF	REV__ENST00000600534.1_1_19:59084484-59085060:+|nuORF	MSMS	A375_MHC_IP_R1	1	503.68231201171875	3	503.627158	1507.85965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.461	1	29.461	28.961	29.961	0								0	0	0	0.16269	1	9229	9229		4.7159	3.2608	1		+		39135	26500	28716	28949	38130	38130					0.12603053365387495
PLRHQRRNYRL	11	Unmodified	_PLRHQRRNYRL_					0	0	0			REV__ENST00000600534.1_1_19:59084484-59085060:+|nuORF	REV__ENST00000600534.1_1_19:59084484-59085060:+|nuORF	MSMS	A375_MHC_IP_R1	1	503.68133544921875	3	503.627158	1507.85965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.478	1	29.478	28.978	29.978	0								0	0	0	0.16305	1	9238	9238		2.8433	1.3882	1		+		39136	26500	28716	28949	38131	38131					0.12603053365387495
PLRHYYHRHTR	11	Unmodified	_PLRHYYHRHTR_					0	0	0		nc|ENSG00000116133|Q15392-2|DHCR24;ENSG00000116133|ENST00000371269|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	MSMS	A375_MHC_IP_R1	1	768.4151000976562	2	768.408175	1534.8018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.57	1	125.57	125.07	126.07	0								0	0	0	0.16302	1	47837	47837		2.9952	0.49676	1				39137	3373	28717	28950	38132	38132					0.055787914398933935
PLRKDLISL	9	Unmodified	_PLRKDLISL_					0	0	0		SOX13|p.F376L|1|0.35|ENSG00000143842|chr1:204122957-204122957|C/A|missense_variant	SOX13|p.F376L|1|0.35|ENSG00000143842|chr1:204122957-204122957|C/A|missense_variant	SOX13|p.F376L|1|0.35|ENSG00000143842|chr1:204122957-204122957|C/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	528.2344360351562	2	527.834591	1053.65463	-0.39269	-0.00020727	0.33931	0.0001791	-0.053372	-2.8172E-05	527.834652058001	93.283	0.40866	94.022	93.847	94.256	0.73901					11	7	2	0	0	0	0.62767	1	35477	35477		23.148	2.6948	1	828170			39138	29223	28718	28951	38133	38133					0.12994881782424272
PLRKILFPLP	10	Unmodified	_PLRKILFPLP_					0	0	0			REV__ENSG00000187918|ENST00000641930|OR51I2	REV__ENSG00000187918|ENST00000641930|OR51I2	MSMS	A375_MHC_IP_R2	2	398.6119384765625	3	398.597143	1192.7696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.857	1	34.61	34.11	35.11	0.75225								0	0	0	0.15585	1	12162	12162		0.77653	0.50751	1		+		39139	22058	28719	28952	38134	38134					0.18092610984217572
PLRLLRAQWRR	11	Unmodified	_PLRLLRAQWRR_					0	0	0		ENST00000392813.8_1_3:158519897-158520086:+|nuORF	ENST00000392813.8_1_3:158519897-158520086:+|nuORF	ENST00000392813.8_1_3:158519897-158520086:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	488.7027282714844	3	488.972266	1463.89497	-0.68623	-0.00033555	2.2864	0.001118	1.6002	0.00078243	489.30631098086155	44.955	0.15555	45.724	45.594	45.75	0.7691					4	2	2	0	0	0	1.0011	1	16797	16797		1.3296	0.11481	1	995050			39140	11429	28720	28953	38135	38135					0.18157715893130444
PLRLLVQKR	9	Unmodified	_PLRLLVQKR_					0	0	0		ENSG00000102981|ENST00000458121|PARD6A;nc|ENSG00000102981|Q9NPB6|PARD6A	ENSG00000102981|ENST00000458121|PARD6A	ENSG00000102981|ENST00000458121|PARD6A	MULTI-MSMS	A375_MHC_IP_R1	1	1123.14453125	1	1122.74697	1121.7397	-0.29323	-0.00032922	-1.662	-0.001866	-1.9552	-0.0021952	1122.7447573886545	145.7	0.0979	145.7	145.66	145.76	0					9	4	3	0	0	0	0.7724	1	55824	55824		0.52476	0.12405	1	231460			39141	2408	28721	28954	38136	38136					0.1836967203887525
PLRLLVQKR	9	Unmodified	_PLRLLVQKR_					0	0	0		ENSG00000102981|ENST00000458121|PARD6A;nc|ENSG00000102981|Q9NPB6|PARD6A	ENSG00000102981|ENST00000458121|PARD6A	ENSG00000102981|ENST00000458121|PARD6A	MULTI-MATCH	A375_MHC_IP_R2	2		1	1122.74697	1121.7397	0.31212	0.00035043	-0.66021	-0.00074125	-0.34809	-0.00039082	1122.7456487735367	145.72	0.076141	145.74	145.71	145.79	0.021408	0.017854	0.00027472	NaN	0.52476	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111520			39142	2408	28721	28954							0.1836967203887525
PLRLWLSKR	9	Unmodified	_PLRLWLSKR_					0	0	0			REV__ENST00000263208.5_1_22:19349323-19349386:-|nuORF	REV__ENST00000263208.5_1_22:19349323-19349386:-|nuORF	MSMS	A375_MHC_IP_R1	1	390.6208190917969	3	390.248625	1167.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.434	1	71.434	70.934	71.934	0								0	0	0	0.15486	1	25953	25953		2.4985	0.59211	1		+		39143	23220	28722	28955	38137	38137					0.1468938552184227
PLRLWLSKR	9	Unmodified	_PLRLWLSKR_					0	0	0			REV__ENST00000263208.5_1_22:19349323-19349386:-|nuORF	REV__ENST00000263208.5_1_22:19349323-19349386:-|nuORF	MSMS	A375_MHC_IP_R2	2	390.6174011230469	3	390.248625	1167.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.51	1	105.28	104.78	105.78	0.76308								0	0	0	0.15486	1	39542	39542		0.96228	0	1		+		39144	23220	28722	28955	38138	38138					0.1468938552184227
PLRNKKFAF	9	Unmodified	_PLRNKKFAF_					0	0	0			REV__ANK2|p.E1408K|1|0.21|ENSG00000145362|chr4:113343116-113343116|G/A|missense_variant	REV__ANK2|p.E1408K|1|0.21|ENSG00000145362|chr4:113343116-113343116|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	374.585693359375	3	374.225709	1119.6553	0.16624	6.221E-05	-0.2417	-9.0449E-05	-0.075458	-2.8238E-05	374.2255995837613	33.157	1.0666	33.909	33.584	34.651	0.75225					68	20	6	0	0	0	0.68705	1	11738	11738		8.1555	0.54658	1	168860000	+		39145	15401	28723	28956	38139	38139					0.10025721222109496
PLRQLLRLRRL	11	Unmodified	_PLRQLLRLRRL_					0	0	0			REV__ENST00000528698.5_1_11:407426-409994:-|nuORF	REV__ENST00000528698.5_1_11:407426-409994:-|nuORF	MSMS	A375_MHC_IP_R1	1	717.4321899414062	2	717.480611	1432.94667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.54	1	128.54	128.04	129.04	0								0	0	0	0.16331	1	49374	49374		1.4819	0.28856	1		+		39146	25808	28724	28957	38140	38140					0.2475145958703706
PLRRPKLNW	9	Unmodified	_PLRRPKLNW_					0	0	0		ENST00000463670.5_1_1:156252735-156254976:+|nuORF	ENST00000463670.5_1_1:156252735-156254976:+|nuORF	ENST00000463670.5_1_1:156252735-156254976:+|nuORF	MSMS	A375_MHC_IP_R1	1	393.9537048339844	3	393.908492	1178.70365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.363	1	19.363	18.863	19.863	0								0	0	0	0.15486	1	4746	4746		8.1555	0.54658	1				39147	12214	28725	28958	38141	38141					0.12144214861996261
PLRRRGRAWCR	11	Unmodified	_PLRRRGRAWCR_					0	0	0			REV__ENST00000331923.8_1_21:34143780-34143846:-|nuORF	REV__ENST00000331923.8_1_21:34143780-34143846:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	476.2918395996094	3	476.273951	1425.80002	-0.72285	-0.00034428	-0.84926	-0.00040448	-1.5721	-0.00074875	476.27363119538455	24.247	0.30471	24.247	24.143	24.447	0					8	5	2	0	0	0	0.73658	1	6933	6933		2.6312	0.37851	1	2464100	+		39148	23633	28726	28959	38142	38142					0.10415459150317474
PLRRRGRAWCR	11	Unmodified	_PLRRRGRAWCR_					0	0	0			REV__ENST00000331923.8_1_21:34143780-34143846:-|nuORF	REV__ENST00000331923.8_1_21:34143780-34143846:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	476.273951	1425.80002	-0.72285	-0.00034428	-0.84926	-0.00040448	-1.5721	-0.00074875	476.27363119538455	24.247	0.30471	24.247	24.143	24.447	0	0.02056	-8.3254E-05	NaN	2.6312	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2464100	+		39149	23633	28726	28959							0.10415459150317474
PLRRRGRAWCR	11	Unmodified	_PLRRRGRAWCR_					0	0	0			REV__ENST00000331923.8_1_21:34143780-34143846:-|nuORF	REV__ENST00000331923.8_1_21:34143780-34143846:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	476.273951	1425.80002	-0.81756	-0.00038938	-0.73009	-0.00034772	-1.5476	-0.0007371	476.60815592001836	23.576	0.25309	24.206	24.029	24.283	0.63014	-0.02056	8.702E-05	NaN	2.6312	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2320600	+		39150	23633	28726	28959							0.10415459150317474
PLRVRSRK	8	Unmodified	_PLRVRSRK_					0	0	0			REV__ENST00000395066.7_1_15:74907619-74907901:+|nuORF	REV__ENST00000395066.7_1_15:74907619-74907901:+|nuORF	MSMS	A375_MHC_IP_R2	2	506.37408447265625	2	506.330342	1010.64613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.64	1	141.69	141.19	142.19	0.04216								0	0	0	0.16876	1	55394	55394		0.69038	0	1		+		39151	24315	28727	28960	38143	38143					0.14123372656456468
PLSDTVRR	8	Unmodified	_PLSDTVRR_					0	0	0		ENST00000565793.5_1_15:79069566-79092863:-|nuORF	ENST00000565793.5_1_15:79069566-79092863:-|nuORF	ENST00000565793.5_1_15:79069566-79092863:-|nuORF	MSMS	A375_MHC_IP_R1	1	472.1789245605469	2	472.269616	942.524678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.53	1	117.53	117.03	118.03	0								0	0	0	0.16876	1	43183	43183		34.187	6.0141	1				39152	13552	28728	28961	38144	38144					0.05111705503293251
PLSFCVSECS	10	Unmodified	_PLSFCVSECS_					0	0	0			REV__ENST00000562567.6_1_16:68267161-68268061:-|nuORF	REV__ENST00000562567.6_1_16:68267161-68268061:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	535.6752319335938	2	536.22791	1070.44127	-0.92015	-0.00049341	-1.21	-0.00064884	-2.1301	-0.0011422	536.2271106289484	39.419	0.55904	40.194	39.914	40.473	0.77451					15	10	2	0	0	0	0.70651	1	14594	14594		9.3831	2.0939	1	3448500	+		39153	26191	28729	28962	38145	38145					-0.0911353505111947
PLSFCVSECS	10	Unmodified	_PLSFCVSECS_					0	0	0			REV__ENST00000562567.6_1_16:68267161-68268061:-|nuORF	REV__ENST00000562567.6_1_16:68267161-68268061:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	536.22791	1070.44127	-0.92015	-0.00049341	-1.21	-0.00064884	-2.1301	-0.0011422	536.2271106289484	39.419	0.55904	40.194	39.914	40.473	0.77451	0.070974	-0.00022917	NaN	9.3831	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3448500	+		39154	26191	28729	28962							-0.0911353505111947
PLSLFGRMVQI	11	Unmodified	_PLSLFGRMVQI_					0	0	0		ENST00000361368.6_1_7:98625224-98626022:-|nuORF	ENST00000361368.6_1_7:98625224-98626022:-|nuORF	ENST00000361368.6_1_7:98625224-98626022:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	630.7286987304688	2	630.860283	1259.70601	-0.83068	-0.00052404	0.81894	0.00051664	-0.011733	-7.4019E-06	630.860314913319	129.95	2.6348	130.16	128.93	131.57	0.2142					106	51	4	0	0	0	0.98748	1	51199	51199		2.7352	2.7352	1	30285000			39155	11044	28730	28963	38146	38146					0.08654882484825066
PLSQDILNL	9	Unmodified	_PLSQDILNL_					0	0	0		ENST00000506166.1_1_4:78663390-78740391:-|nuORF;ENSG00000138767|ENST00000504123|CNOT6L	ENST00000506166.1_1_4:78663390-78740391:-|nuORF	ENST00000506166.1_1_4:78663390-78740391:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	507.1868591308594	2	506.787307	1011.56006	-0.21271	-0.0001078	-0.10637	-5.3905E-05	-0.31907	-0.0001617	506.78708759901247	93.186	0.50998	93.186	92.871	93.381	0					19	9	3	0	0	0	0.077132	1	34233	34233		54.774	0	1	1524900			39156	5029	28731	28964	38147	38147					0.05474323240423473
PLSRAGIS	8	Unmodified	_PLSRAGIS_					0	0	0			REV__chr17:16440253-16441357|121|16.51|0.46|5.15|+|2|SNHG29,SNHG29|1	REV__chr17:16440253-16441357|121|16.51|0.46|5.15|+|2|SNHG29,SNHG29|1	MULTI-MSMS	A375_MHC_IP_R2	2	400.6329345703125	2	400.734877	799.455202	0.15984	6.4055E-05	0.89081	0.00035698	1.0507	0.00042103	400.7353572175503	142.17	0.30344	142.2	142.03	142.33	0.030731					10	5	3	0	0	0	0.77603	1	55594	55594		9.3474	0	1	974610	+		39157	15722	28732	28965	38148	38148					0.047452465545120504
PLSSAGREET	10	Unmodified	_PLSSAGREET_					0	0	0			REV__ENST00000533408.1_1_1:32385173-32403734:-|nuORF	REV__ENST00000533408.1_1_1:32385173-32403734:-|nuORF	MSMS	A375_MHC_IP_R1	1	523.7295532226562	2	523.759278	1045.504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.305	1	52.305	51.805	52.805	0								0	0	0	0.13403	1	18596	18596		32.786	11.039	1		+		39158	25823	28733	28966	38149	38149					-0.01692929667046883
PLSSPYGP	8	Unmodified	_PLSSPYGP_					0	0	0		SMR3A|p.P69S|1|0.11|ENSG00000109208|chr4:70366794-70366794|C/T|missense_variant	SMR3A|p.P69S|1|0.11|ENSG00000109208|chr4:70366794-70366794|C/T|missense_variant	SMR3A|p.P69S|1|0.11|ENSG00000109208|chr4:70366794-70366794|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	409.14471435546875	2	409.208161	816.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.846	1	42.62	42.12	43.12	0.77451								0	0	0	0.16876	1	15547	15547		6.3541	0	1				39159	29212	28734	28967	38150	38150					-0.013775509480069559
PLSSYNRQI	9	Unmodified	_PLSSYNRQI_					0	0	0		ENST00000487296.1_1_6:32815065-32815170:-|nuORF	ENST00000487296.1_1_6:32815065-32815170:-|nuORF	ENST00000487296.1_1_6:32815065-32815170:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	540.1884155273438	2	539.288005	1076.56146	-0.44073	-0.00023768	-0.82127	-0.0004429	-1.262	-0.00068058	539.2875326223518	71.64	0.70464	71.64	71.364	72.069	0					34	13	3	0	0	0	0.5339	1	26026	26026		18.135	2.2878	1	22906000			39160	12595	28735	28968	38151	38151					0.02623957329183213
PLSTYRVND	9	Unmodified	_PLSTYRVND_					0	0	0			REV__ENSG00000148343|ENST00000684074|MIGA2	REV__ENSG00000148343|ENST00000684074|MIGA2	MULTI-SECPEP	A375_MHC_IP_R2	2	532.2185668945312	2	532.772188	1063.52982	-0.86712	-0.00046198	0.081108	4.3212E-05	-0.78602	-0.00041877	532.7722018091112	51.212	1.4717	51.964	51.36	52.831	0.75225					67	28	5	0	0	0	0.73363	1	19223	19223		3.5965	0	1	24862000	+		39161	19623	28736	28969	38152	38152					0.0005996457523451681
PLTACQKTKT	10	Unmodified	_PLTACQKTKT_					0	0	0		ENST00000392650.7_1_17:71334510-71334729:-|nuORF	ENST00000392650.7_1_17:71334510-71334729:-|nuORF	ENST00000392650.7_1_17:71334510-71334729:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	363.5731201171875	3	364.202353	1089.58523	-0.29203	-0.00010636	-0.097241	-3.5416E-05	-0.38927	-0.00014177	364.2024181932183	23.782	0.25337	24.413	24.232	24.485	0.63015					9	4	3	0	0	0	0.93194	1	7646	7646		5.4027	2.9042	1	2075700			39162	11424	28737	28970	38153	38153					0.0440205477134441
PLTDANRLGV	10	Unmodified	_PLTDANRLGV_					0	0	0			REV__ENSG00000204595|ENST00000376650|DPRX	REV__ENSG00000204595|ENST00000376650|DPRX	MULTI-SECPEP	A375_MHC_IP_R2	2	527.649169921875	2	528.29583	1054.57711	-0.49189	-0.00025986	0.21935	0.00011588	-0.27254	-0.00014398	528.2951716187516	83.458	0.40874	84.198	83.947	84.356	0.73962					15	7	3	0	0	0	0.83086	1	31675	31675		6.7232	0	1	1148400	+		39163	22528	28738	28971	38154	38154					0.052002438462295686
PLTECDSSL	9	Unmodified	_PLTECDSSL_					0	0	0			REV__ENST00000222402.7_1_7:43995369-43995687:+|nuORF	REV__ENST00000222402.7_1_7:43995369-43995687:+|nuORF	MSMS	A375_MHC_IP_R2	2	482.6785888671875	2	482.718233	963.421912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.05	1	53.801	53.301	54.301	0.75105								0	0	0	0.15486	1	20013	20013		13.508	0	1		+		39164	23054	28739	28972	38155	38155					-0.06126168070363747
PLTELLLKY	9	Unmodified	_PLTELLLKY_					0	0	0			REV__nc|ENSG00000167632|Q96Q05-3|TRAPPC9	REV__nc|ENSG00000167632|Q96Q05-3|TRAPPC9	MSMS	A375_MHC_IP_R1	1	363.9374694824219	3	363.889992	1088.64815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.047	1	26.047	25.547	26.547	0								0	0	0	0.15386	1	7700	7700		15.248	0.41021	1		+		39165	20778	28740	28973	38156	38156					0.10736943831057033
PLTLWLQN	8	Unmodified	_PLTLWLQN_					0	0	0		ENST00000394056.6_1_6:43027976-43028307:+|nuORF;ENST00000481499.5_1_6:43028115-43028307:+|nuORF	ENST00000394056.6_1_6:43027976-43028307:+|nuORF	ENST00000394056.6_1_6:43027976-43028307:+|nuORF	MSMS	A375_MHC_IP_R1	1	492.70989990234375	2	492.779285	983.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.475	1	80.475	79.975	80.975	0								0	0	0	0.16876	1	29388	29388		12.532	0	1				39166	11448	28741	28974	38157	38157					0.05158661794177988
PLTPLTPTP	9	Unmodified	_PLTPLTPTP_					0	0	0		nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000124496|ENST00000695948|TRERF1;nc|ENSG00000124496|Q96PN7-2|TRERF1;nc|ENSG00000124496|Q96PN7-3|TRERF1;nc|ENSG00000124496|Q96PN7-4|TRERF1;nc|ENSG00000124496|Q96PN7-5|TRERF1	nc|ENSG00000124496|Q96PN7|TRERF1	nc|ENSG00000124496|Q96PN7|TRERF1	MULTI-SECPEP	A375_MHC_IP_R2	2	937.0238037109375	1	936.54006	935.532783	-0.30974	-0.00029008	-0.72714	-0.000681	-1.0369	-0.00097108	936.5392078829356	128.31	0.35901	128.55	128.4	128.76	0.23946					9	6	2	0	0	0	0.77834	1	50315	50315		4.756	0	1	7166200			39167	3907	28742	28975	38158	38158					0.062438397000164514
PLTPLTPTP	9	Unmodified	_PLTPLTPTP_					0	0	0		nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000124496|ENST00000695948|TRERF1;nc|ENSG00000124496|Q96PN7-2|TRERF1;nc|ENSG00000124496|Q96PN7-3|TRERF1;nc|ENSG00000124496|Q96PN7-4|TRERF1;nc|ENSG00000124496|Q96PN7-5|TRERF1	nc|ENSG00000124496|Q96PN7|TRERF1	nc|ENSG00000124496|Q96PN7|TRERF1	MULTI-MATCH	A375_MHC_IP_R1	1		1	936.54006	935.532783	0.016239	1.5209E-05	-2.0232	-0.0018948	-2.0069	-0.0018796	936.5383028263892	128.59	0.35483	128.59	128.48	128.84	0	0.021153	-0.00071756	NaN	4.756	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3990700			39168	3907	28742	28975							0.062438397000164514
PLTPQRLLREE	11	Unmodified	_PLTPQRLLREE_					0	0	0		ENST00000308527.5_1_15:75941111-75941267:+|nuORF	ENST00000308527.5_1_15:75941111-75941267:+|nuORF	ENST00000308527.5_1_15:75941111-75941267:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	676.7872314453125	2	676.388251	1350.76195	-0.88561	-0.00059902	-0.80641	-0.00054544	-1.692	-0.0011445	676.3876383471174	132.87	0.76677	132.87	132.64	133.41	0					24	14	2	0	0	0	0.7342	1	51257	51257		4.897	2.1618	1	11720000			39169	10602	28743	28976	38159	38159					0.10059806925983139
PLTPRRGD	8	Unmodified	_PLTPRRGD_					0	0	0		ENST00000484358.1_1_22:39712851-39713034:-|nuORF;ENST00000465618.5_1_22:39712851-39715803:-|nuORF	ENST00000484358.1_1_22:39712851-39713034:-|nuORF	ENST00000484358.1_1_22:39712851-39713034:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	456.6562194824219	2	456.256508	910.498464	0.21676	9.8897E-05	-0.076477	-3.4893E-05	0.14028	6.4004E-05	456.25641195920525	114.31	2.9993	114.31	113.29	116.29	0					132	58	3	0	0	0	0.77717	1	41616	41616		5.2307	0	1	35965000			39170	12246	28744	28977	38160	38160					0.039634363317986754
PLTQLPVSL	9	Unmodified	_PLTQLPVSL_					0	0	0		ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-3|RPAP1;ENST00000565167.1_1_15:41810158-41813973:-|nuORF	ENSG00000103932|ENST00000304330|RPAP1	ENSG00000103932|ENST00000304330|RPAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6595764160156	2	484.294768	966.574983	-0.55353	-0.00026807	-1.9872	-0.00096239	-2.5407	-0.0012305	484.2946936832355	78.465	0.50844	79.21	78.828	79.337	0.74473					17	9	2	0	0	0	0.65246	1	29664	29664		15.847	0	1	1036200			39171	2474	28745	28978	38161	38161					0.09035815108416045
PLTRLSTDI	9	Unmodified	_PLTRLSTDI_					0	0	0		nc|ENSG00000170324|Q68DX3-5|FRMPD2;nc|ENSG00000170324|Q68DX3-4|FRMPD2;nc|ENSG00000150175|Q6IN97|FRMPD2B;nc|ENSG00000170324|Q68DX3-2|FRMPD2;ENSG00000170324|ENST00000374201|FRMPD2	nc|ENSG00000170324|Q68DX3-5|FRMPD2	nc|ENSG00000170324|Q68DX3-5|FRMPD2	MULTI-SECPEP	A375_MHC_IP_R1	1	507.98046875	2	508.292756	1014.57096	-0.3206	-0.00016296	-0.1957	-9.9474E-05	-0.5163	-0.00026243	508.79408404489385	51.182	0.35556	51.182	51.017	51.373	0					14	6	3	0	0	0	0.55359	1	18205	18205		21.747	0	1	2565700			39172	7494	28746	28979	38162	38162					0.06425725614712974
PLTRLSTDI	9	Unmodified	_PLTRLSTDI_					0	0	0		nc|ENSG00000170324|Q68DX3-5|FRMPD2;nc|ENSG00000170324|Q68DX3-4|FRMPD2;nc|ENSG00000150175|Q6IN97|FRMPD2B;nc|ENSG00000170324|Q68DX3-2|FRMPD2;ENSG00000170324|ENST00000374201|FRMPD2	nc|ENSG00000170324|Q68DX3-5|FRMPD2	nc|ENSG00000170324|Q68DX3-5|FRMPD2	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9806213378906	2	508.292756	1014.57096	-0.90987	-0.00046248	-0.65106	-0.00033093	-1.5609	-0.00079341	508.29315933598525	50.367	0.4063	51.121	50.904	51.311	0.75406					17	7	3	0	0	0	0.55359	1	18948	18948		21.747	0	1	2973000			39173	7494	28746	28979	38163	38163					0.06425725614712974
PLTRRRWRDMR	11	Unmodified	_PLTRRRWRDMR_					0	0	0			REV__ENSG00000197077|ENST00000358431|KIAA1671	REV__ENSG00000197077|ENST00000358431|KIAA1671	MSMS	A375_MHC_IP_R2	2	771.7847900390625	2	771.93096	1541.84737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.39	1	104.16	103.66	104.66	0.76428								0	0	0	0.16331	1	39158	39158		1.4819	0	1		+		39174	22251	28747	28980	38164	38164					0.09811693630626905
PLTWREGGF	9	Unmodified	_PLTWREGGF_					0	0	0		ENST00000591292.5_1_16:4851502-4851742:-|nuORF	ENST00000591292.5_1_16:4851502-4851742:-|nuORF	ENST00000591292.5_1_16:4851502-4851742:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	532.22412109375	2	531.771991	1061.52943	-0.63238	-0.00033628	-0.11285	-6.0013E-05	-0.74524	-0.0003963	531.771938786194	57.889	1.066	57.889	57.364	58.43	0					43	20	4	0	0	0	0.4867	1	20581	20581		20.454	0	1	11609000			39175	13797	28748	28981	38165	38165					0.0011258964605076471
PLTWREGGF	9	Unmodified	_PLTWREGGF_					0	0	0		ENST00000591292.5_1_16:4851502-4851742:-|nuORF	ENST00000591292.5_1_16:4851502-4851742:-|nuORF	ENST00000591292.5_1_16:4851502-4851742:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	531.771991	1061.52943	-0.63238	-0.00033628	-0.11285	-6.0013E-05	-0.74524	-0.0003963	531.771938786194	57.889	1.066	57.889	57.364	58.43	0	-0.00023405	2.1625E-05	NaN	20.454	43	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11609000			39176	13797	28748	28981							0.0011258964605076471
PLTWREGGF	9	Unmodified	_PLTWREGGF_					0	0	0		ENST00000591292.5_1_16:4851502-4851742:-|nuORF	ENST00000591292.5_1_16:4851502-4851742:-|nuORF	ENST00000591292.5_1_16:4851502-4851742:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	531.771991	1061.52943	-1.0746	-0.00057145	-0.15731	-8.3654E-05	-1.2319	-0.00065511	531.7719099884351	57.139	0.71159	57.889	57.561	58.273	0.75015	0.00023405	-2.5658E-05	NaN	20.454	35	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13687000			39177	13797	28748	28981							0.0011258964605076471
PLVCSHSCP	9	Unmodified	_PLVCSHSCP_					0	0	0			REV__ENST00000524570.5_1_8:144904827-144905247:-|nuORF	REV__ENST00000524570.5_1_8:144904827-144905247:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	472.1126708984375	2	471.71223	941.409908	-0.49837	-0.00023509	1.3498	0.00063671	0.85142	0.00040163	471.71291890884373	89.365	0.50233	90.097	89.836	90.339	0.7318					17	9	2	0	0	0	0.3054	1	34016	34016		30.225	5.5509	1	2338600	+		39178	25757	28749	28982	38166	38166					-0.06314063294541938
PLVCSHSCP	9	Unmodified	_PLVCSHSCP_					0	0	0			REV__ENST00000524570.5_1_8:144904827-144905247:-|nuORF	REV__ENST00000524570.5_1_8:144904827-144905247:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	471.1245422363281	2	471.71223	941.409908	-0.49837	-0.00023509	1.3498	0.00063671	0.85142	0.00040163	471.71291890884373	89.365	0.50233	90.097	89.836	90.339	0.7318					17	9	2	0	0	0	0.52144	1	34043	34043		30.225	5.5509	1	2338600	+		39179	25757	28749	28982	38167	38167					-0.06314063294541938
PLVCSHSCP	9	Unmodified	_PLVCSHSCP_					0	0	0			REV__ENST00000524570.5_1_8:144904827-144905247:-|nuORF	REV__ENST00000524570.5_1_8:144904827-144905247:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	471.71223	941.409908	-0.54969	-0.00025929	1.4482	0.00068312	0.89848	0.00042383	471.71291433431867	90.21	0.5066	90.21	89.931	90.437	0	0.056275	3.6503E-05	NaN	30.225	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2703700	+		39180	25757	28749	28982							-0.06314063294541938
PLVDIRSRV	9	Unmodified	_PLVDIRSRV_					0	0	0			REV__ENST00000392518.8_3_19:50194594-50195161:+|nuORF	REV__ENST00000392518.8_3_19:50194594-50195161:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	352.60626220703125	3	352.217102	1053.62948	-0.13551	-4.7731E-05	-0.17565	-6.1866E-05	-0.31116	-0.0001096	352.2170240315635	34.193	0.70963	34.193	33.848	34.557	0					27	13	3	0	0	0	0.78351	1	11108	11108		8.7454	2.8773	1	3714500	+		39181	24274	28750	28983	38168	38168					0.10480826979846825
PLVHATQL	8	Unmodified	_PLVHATQL_					0	0	0			REV__ENST00000473223.5_1_1:155184463-155187072:-|nuORF	REV__ENST00000473223.5_1_1:155184463-155187072:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	439.6746520996094	2	439.758352	877.502152	-0.4644	-0.00020422	0.5462	0.0002402	0.081801	3.5973E-05	439.75871458005014	50.463	0.30418	51.217	51.108	51.412	0.75406					7	5	2	0	0	0	0.90224	1	18990	18990		26.341	6.9023	1	643770	+		39182	25146	28751	28984	38169	38169					0.05850106105674513
PLVHATQL	8	Unmodified	_PLVHATQL_					0	0	0			REV__ENST00000473223.5_1_1:155184463-155187072:-|nuORF	REV__ENST00000473223.5_1_1:155184463-155187072:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	439.758352	877.502152	0.020535	9.0304E-06	0.76922	0.00033827	0.78975	0.0003473	439.75848154533475	51.479	0.40566	51.479	51.27	51.676	0	0.13074	0.00012367	NaN	30.225	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	865000	+		39183	25146	28751	28984							0.05850106105674513
PLVKIIPKLLI	11	Unmodified	_PLVKIIPKLLI_					0	0	0			REV__nc|ENSG00000175216|Q14008-2|CKAP5	REV__nc|ENSG00000175216|Q14008-2|CKAP5	MSMS	A375_MHC_IP_R1	1	623.985595703125	2	623.946685	1245.87882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.31	1	113.31	112.81	113.81	0								0	0	0	0.1636	1	41533	41533		0	0	1		+		39184	21331	28752	28985	38170	38170					0.26571196883696757
PLVMYVPYY	9	Unmodified	_PLVMYVPYY_					0	0	0			REV__ENSG00000109205|ENST00000683306|ODAM	REV__ENSG00000109205|ENST00000683306|ODAM	MSMS	A375_MHC_IP_R1	1	572.803466796875	2	572.791004	1143.56745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.653	1	87.653	87.153	88.153	0								0	0	0	0.15486	1	32166	32166		9.3474	3.6156	1		+		39185	17575	28753	28986	38171	38171					0.0014133951647181675
PLVPLLKLV	9	Unmodified	_PLVPLLKLV_					0	0	0			REV__ENST00000318217.9_1_17:30820355-30820523:-|nuORF	REV__ENST00000318217.9_1_17:30820355-30820523:-|nuORF	MSMS	A375_MHC_IP_R2	2	496.358154296875	2	496.349346	990.684139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.08	1	144.1	143.6	144.6	0.024414								0	0	0	0.15486	1	56289	56289		0	0	1		+		39186	23550	28754	28987	38172	38172					0.18842445798543395
PLVPMRGWW	9	Unmodified	_PLVPMRGWW_					0	0	0		ENST00000481899.1_1_7:99056719-99057898:-|nuORF	ENST00000481899.1_1_7:99056719-99057898:-|nuORF	ENST00000481899.1_1_7:99056719-99057898:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	571.7030029296875	2	571.302404	1140.59026	-0.094784	-5.415E-05	0.84769	0.00048429	0.7529	0.00043014	571.3028188435246	78.884	0.65776	78.884	78.556	79.214	0					23	12	3	0	0	0	0.74651	1	28813	28813		4.756	0	1	2908200			39187	12519	28755	28988	38173	38173					0.025584034246321607
PLVPRLRLT	9	Unmodified	_PLVPRLRLT_					0	0	0		ENST00000372870.5_1_9:131122965-131123439:+|nuORF	ENST00000372870.5_1_9:131122965-131123439:+|nuORF	ENST00000372870.5_1_9:131122965-131123439:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	355.45977783203125	3	355.569476	1063.6866	0.15373	5.4662E-05	-0.48327	-0.00017184	-0.32954	-0.00011717	355.5693056784813	42.638	0.35332	42.638	42.386	42.739	0					11	6	2	0	0	0	0.80101	1	14699	14699		2.7352	2.7352	1	1037400			39188	11216	28756	28989	38174	38174					0.15730294256218258
PLVQSFSF	8	Unmodified	_PLVQSFSF_					0	0	0		nc|ENSG00000127329|P23467-4|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB;ENSG00000127329|ENST00000334414|PTPRB	nc|ENSG00000127329|P23467-4|PTPRB	nc|ENSG00000127329|P23467-4|PTPRB	MSMS	A375_MHC_IP_R1	1	462.6997375488281	2	462.744911	923.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.264	1	71.264	70.764	71.764	0								0	0	0	0.16876	1	25887	25887		20.871	0	1				39189	4083	28757	28990	38175	38175					0.010469974944726346
PLVQSFSF	8	Unmodified	_PLVQSFSF_					0	0	0		nc|ENSG00000127329|P23467-4|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB;ENSG00000127329|ENST00000334414|PTPRB	nc|ENSG00000127329|P23467-4|PTPRB	nc|ENSG00000127329|P23467-4|PTPRB	MULTI-MSMS	A375_MHC_IP_R2	2	462.6993408203125	2	462.744911	923.475269	-0.48609	-0.00022494	0.15733	7.2803E-05	-0.32876	-0.00015213	462.74481300112103	70.409	0.40633	71.143	70.946	71.352	0.73421					13	7	2	0	0	0	0.77123	1	26652	26652		14.582	0	1	1501900			39190	4083	28757	28990	38176	38176					0.010469974944726346
PLVTYEHLKKR	11	Unmodified	_PLVTYEHLKKR_					0	0	0			REV__nc|ENSG00000197893|Q86VF7-4|NRAP	REV__nc|ENSG00000197893|Q86VF7-4|NRAP	MULTI-MSMS	A375_MHC_IP_R1	1	462.3409423828125	3	461.94175	1382.80342	-0.59008	-0.00027258	-0.50666	-0.00023405	-1.0967	-0.00050663	462.2759799035564	143.04	1.0458	143.04	142.74	143.78	0					23	20	2	0	0	0	0.73897	1	54940	54940		0.094841	0	1	1149500	+		39191	22328	28758	28991	38177	38177					0.1273298768528548
PLWLRGWWRRV	11	Unmodified	_PLWLRGWWRRV_					0	0	0		ENST00000520076.5_1_8:82633312-82633516:-|nuORF	ENST00000520076.5_1_8:82633312-82633516:-|nuORF	ENST00000520076.5_1_8:82633312-82633516:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	509.3611755371094	3	508.961478	1523.86261	-0.65238	-0.00033204	0.53013	0.00026982	-0.12224	-6.2218E-05	508.96163814740135	133.92	1.2235	134.08	133.65	134.88	0.16487					61	23	4	0	0	0	0.73897	1	52707	52707		0.094841	0.094841	1	18805000			39192	12987	28759	28992	38178	38178					0.12162928490124614
PLWQCLEHK	9	Unmodified	_PLWQCLEHK_					0	0	0			REV__ENST00000409663.7_1_4:154555352-154556641:+|nuORF	REV__ENST00000409663.7_1_4:154555352-154556641:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	384.60797119140625	3	385.198943	1152.575	-0.57345	-0.00022089	0.39432	0.00015189	-0.17913	-6.9E-05	385.1990714232855	33.621	0.86119	34.373	33.942	34.803	0.75225					29	16	2	0	0	0	0.71341	1	11899	11899		8.9762	8.9762	1	12500000	+		39193	24473	28760	28993	38179	38179					0.004814918367628707
PLYPPPAPGP	10	Unmodified	_PLYPPPAPGP_					0	0	0			REV__ENSG00000124313|ENST00000642864|IQSEC2	REV__ENSG00000124313|ENST00000642864|IQSEC2	MULTI-MSMS	A375_MHC_IP_R2	2	1006.4312133789062	1	1005.54039	1004.53312	0.067822	6.8198E-05	0.51593	0.00051879	0.58376	0.00058699	1005.540851642462	126.23	0.45467	126.52	126.33	126.78	0.2951					18	8	3	0	0	0	0.7098	1	49285	49285		7.9102	2.6795	1	33206000	+		39194	18296	28761	28994	38180	38180					0.031032594199018604
PLYRIFDRYK	10	Unmodified	_PLYRIFDRYK_					0	0	0			REV__ENST00000574478.1_1_17:18651366-18682393:+|nuORF	REV__ENST00000574478.1_1_17:18651366-18682393:+|nuORF	MSMS	A375_MHC_IP_R2	2	685.741455078125	2	685.882604	1369.75066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.95	1	109.7	109.2	110.2	0.74684								0	0	0	0.15596	1	41127	41127		1.4819	0	1		+		39195	21110	28762	28995	38181	38181					0.08057029622500522
PMARQFSRD	9	Unmodified	_PMARQFSRD_					0	0	0		nc|ENSG00000170579|O14490-3|DLGAP1;nc|ENSG00000170579|O14490-5|DLGAP1;nc|ENSG00000170579|O14490-2|DLGAP1;nc|ENSG00000170579|O14490-4|DLGAP1;nc|ENSG00000170579|O14490-6|DLGAP1;nc|ENSG00000170579|O14490-7|DLGAP1;ENSG00000170579|ENST00000315677|DLGAP1	nc|ENSG00000170579|O14490-3|DLGAP1	nc|ENSG00000170579|O14490-3|DLGAP1	MSMS	A375_MHC_IP_R1	1	369.77294921875	3	369.850314	1106.52911	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.266	1	18.266	17.766	18.766	0								0	0	0	0.15486	1	4349	4349		0.26902	0	1				39196	7522	28763	28996	38182	38182					-0.01989153345448358
PMHHINLVP	9	Unmodified	_PMHHINLVP_					0	0	0		ENSG00000139211|ENST00000550413|AMIGO2;AMIGO2|p.N345*|1|0.2|ENSG00000139211|chr12:47077955-47077970|TAACCAGACTTCCATT/-|frameshift_variant	ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	MULTI-SECPEP	A375_MHC_IP_R2	2	528.6958618164062	2	529.284211	1056.55387	-0.67788	-0.00035879	1.7047	0.00090227	1.0268	0.00054348	529.2850081190542	70.869	0.70893	71.603	71.402	72.111	0.73421					17	13	2	0	0	0	0.71541	1	26864	26864		16.942	16.942	1	3073800			39197	123	28764	28997	38183	38183					0.02785526527895854
PMKRVKAY	8	Unmodified	_PMKRVKAY_					0	0	0			REV__ENSG00000131507|ENST00000253814|NDFIP1	REV__ENSG00000131507|ENST00000253814|NDFIP1	MSMS	A375_MHC_IP_R2	2	496.7215881347656	2	496.78913	991.563706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.67	1	135.8	135.3	136.3	0.12727								0	0	0	0.16876	1	53321	53321		8.5933	2.3875	1		+		39198	18612	28765	28998	38184	38184					0.06758714533293642
PMKVQVEFK	9	Unmodified	_PMKVQVEFK_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000037665	REV__CON__ENSEMBL:ENSBTAP00000037665	MULTI-MSMS	A375_MHC_IP_R1	1	369.5829772949219	3	369.207327	1104.60015	0.10699	3.9501E-05	3.3342	0.001231	3.4411	0.0012705	369.20879131808954	32.926	0.5051	32.926	32.634	33.14	0					11	9	2	0	0	0	0.70411	1	10737	10737		6.6304	3.3107	1	1481800	+	+	39199	15847	28766	28999	38185	38185					0.05203546639359047
PMPLFLRW	8	Unmodified	_PMPLFLRW_					0	0	0			REV__ENST00000262241.6_1_14:103180868-103180916:+|nuORF	REV__ENST00000262241.6_1_14:103180868-103180916:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	531.2079467773438	2	530.294048	1058.57354	-0.25356	-0.00013446	-1.9332	-0.0010252	-2.1867	-0.0011596	530.7949350313178	126.22	1.5133	126.22	125.65	127.16	0					47	29	3	0	0	0	0.77603	1	48367	48367		9.3474	0.60203	1	11307000	+		39200	23200	28767	29000	38186	38186					0.046599025386967696
PMRWIRRKLW	10	Unmodified	_PMRWIRRKLW_					0	0	0			REV__ENST00000577847.1_1_17:18087769-18087952:-|nuORF	REV__ENST00000577847.1_1_17:18087769-18087952:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	721.7899169921875	2	721.421708	1440.82886	-0.81779	-0.00058997	0.33581	0.00024226	-0.48198	-0.00034771	721.4217969261664	132.67	1.3188	132.67	131.78	133.1	0					105	25	5	0	0	0	0.94862	1	50931	50931		0.40072	0	1	194070000	+		39201	26324	28768	29001	38187	38187					0.1260818372675203
PMWLDKIKKRL	11	Unmodified	_PMWLDKIKKRL_					0	0	0		nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L;ENST00000483728.5_1_2:231265972-231267608:+|nuORF;nc|ENSG00000079263|Q13342-5|SP140;ENSG00000079263|ENST00000392045|SP140;nc|ENSG00000079263|Q13342-3|SP140;nc|ENSG00000079263|Q13342-6|SP140	nc|ENSG00000185404|Q9H930-2|SP140L;nc|ENSG00000079263|Q13342-5|SP140	nc|ENSG00000185404|Q9H930-2|SP140L	MSMS	A375_MHC_IP_R2	2	476.6851501464844	3	476.623364	1426.84826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.24	1	140.28	139.78	140.78	0.04216								0	0	0	0.16353	1	54907	54907		0.094841	0.011491	1				39202	8663;1691	28769	29002	38188	38188					0.15191095226964535
PNAAPYHS	8	Unmodified	_PNAAPYHS_					0	0	0			REV__ENSG00000178662|ENST00000651982|CSRNP3	REV__ENSG00000178662|ENST00000651982|CSRNP3	MULTI-MSMS	A375_MHC_IP_R1	1	855.925537109375	1	856.394793	855.387516	-0.66273	-0.00056756	0.66248	0.00056735	-0.00024516	-2.0995E-07	856.3951954247707	140.26	0.2054	140.26	140.18	140.39	0					5	3	2	0	0	0	0.77717	1	53876	53876		5.2307	0	1	1885700	+		39203	21512	28770	29003	38189	38189					-0.04596203376286212
PNAAPYHS	8	Unmodified	_PNAAPYHS_					0	0	0			REV__ENSG00000178662|ENST00000651982|CSRNP3	REV__ENSG00000178662|ENST00000651982|CSRNP3	MULTI-MATCH	A375_MHC_IP_R2	2		1	856.394793	855.387516	-0.4527	-0.00038769	0.39153	0.0003353	-0.061169	-5.2385E-05	856.3952032927662	140.23	0.30737	140.27	140.14	140.45	0.04216	0.0059445	-0.00015703	NaN	5.2307	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1574400	+		39204	21512	28770	29003							-0.04596203376286212
PNANFVQPGD	10	Unmodified	_PNANFVQPGD_					0	0	0		nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L;ENSG00000168386|ENST00000477258|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	MULTI-SECPEP	A375_MHC_IP_R1	1	353.2576904296875	3	353.501568	1057.48287	-0.32608	-0.00011527	1.0644	0.00037625	0.73828	0.00026098	353.5017171759204	39.809	0.30431	39.809	39.643	39.948	0					8	5	3	0	0	0	0.8528	1	13663	13663		14.218	2.0434	1	793730			39205	7294	28771	29004	38190	38190					-0.04356894975899195
PNATHDYNTSF	11	Unmodified	_PNATHDYNTSF_					0	0	0		nc|ENSG00000137872|Q8NFY4-3|SEMA6D;nc|ENSG00000137872|Q8NFY4-2|SEMA6D;nc|ENSG00000137872|Q8NFY4-4|SEMA6D;nc|ENSG00000137872|Q8NFY4-5|SEMA6D;nc|ENSG00000137872|Q8NFY4-6|SEMA6D;ENSG00000137872|ENST00000536845|SEMA6D	nc|ENSG00000137872|Q8NFY4-3|SEMA6D	nc|ENSG00000137872|Q8NFY4-3|SEMA6D	MULTI-MSMS	A375_MHC_IP_R1	1	423.1380920410156	3	422.851036	1265.53128	0.53752	0.00022729	2.4352	0.0010297	2.9727	0.001257	423.1868575498332	44.984	0.40512	44.984	44.727	45.132	0					14	7	3	0	0	0	0.73135	1	15736	15736		3.8459	1.2147	1	1300100			39206	4932	28772	29005	38191	38191					-0.09086446126684677
PNATTANGN	9	Unmodified	_PNATTANGN_					0	0	0		ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant;ANK2|p.D3531Ffs*6|1|0.05|ENSG00000145362|chr4:113359207-113359208|-/ATTCTAT|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2	ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant	ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	429.65814208984375	2	430.198856	858.383159	-0.10584	-4.5531E-05	-0.41909	-0.00018029	-0.52493	-0.00022582	430.1986714756185	37.671	0.6641	37.671	37.351	38.016	0					26	12	3	0	0	0	0.79191	1	12831	12831		6.7232	6.7232	1	5499600			39207	132	28773	29006	38192	38192					-0.05169712589849951
PNCLTQAQSFY	11	Unmodified	_PNCLTQAQSFY_					0	0	0			REV__ENSG00000274209|ENST00000620264|ANTXRL	REV__ENSG00000274209|ENST00000620264|ANTXRL	MULTI-SECPEP	A375_MHC_IP_R1	1	424.2381591796875	3	424.529017	1270.56522	-0.011105	-4.7143E-06	-2.1425	-0.00090957	-2.1536	-0.00091428	424.8622446171498	38.633	0.35718	38.633	38.423	38.78	0					9	6	2	0	0	0	0.99732	1	13058	13058		4.1166	2.2103	1	1654500	+		39208	22955	28774	29007	38193	38193					-0.0592374095924697
PNCSRYFQF	9	Unmodified	_PNCSRYFQF_					0	0	0		ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	MSMS	A375_MHC_IP_R1	1	387.5794372558594	3	387.843048	1160.50731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.579	1	16.579	16.079	17.079	0								0	0	0	0.15486	1	3865	3865		0.23584	0	1				39209	4901	28775	29008	38194	38194					-0.06651958094039401
PNDECDNSSER	11	Unmodified	_PNDECDNSSER_					0	0	0			REV__DDX4|p.K305Ifs*3|1|0.14|ENSG00000152670|chr5:55786567-55786574|AAGCTGGT/-|frameshift_variant	REV__DDX4|p.K305Ifs*3|1|0.14|ENSG00000152670|chr5:55786567-55786574|AAGCTGGT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	633.6387329101562	2	633.23858	1264.46261	-0.49588	-0.00031401	0.39245	0.00024852	-0.10343	-6.5493E-05	633.2388365087963	47.809	0.60543	47.809	47.517	48.122	0					24	11	3	0	0	0	0.7039	1	16818	16818		15.248	7.6395	1	4813800	+		39210	15977	28776	29009	38195	38195					-0.15904478488710083
PNDECDNSSER	11	Unmodified	_PNDECDNSSER_					0	0	0			REV__DDX4|p.K305Ifs*3|1|0.14|ENSG00000152670|chr5:55786567-55786574|AAGCTGGT/-|frameshift_variant	REV__DDX4|p.K305Ifs*3|1|0.14|ENSG00000152670|chr5:55786567-55786574|AAGCTGGT/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	633.23858	1264.46261	-0.49588	-0.00031401	0.39245	0.00024852	-0.10343	-6.5493E-05	633.2388365087963	47.809	0.60543	47.809	47.517	48.122	0	-0.11318	9.3864E-05	NaN	15.248	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4813800	+		39211	15977	28776	29009							-0.15904478488710083
PNDECDNSSER	11	Unmodified	_PNDECDNSSER_					0	0	0			REV__DDX4|p.K305Ifs*3|1|0.14|ENSG00000152670|chr5:55786567-55786574|AAGCTGGT/-|frameshift_variant	REV__DDX4|p.K305Ifs*3|1|0.14|ENSG00000152670|chr5:55786567-55786574|AAGCTGGT/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	633.23858	1264.46261	-0.61449	-0.00038912	0.21682	0.0001373	-0.39767	-0.00025182	633.2386270873562	47.274	0.45879	48.036	47.715	48.174	0.76128	0.11318	-0.00012857	NaN	15.248	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5843300	+		39212	15977	28776	29009							-0.15904478488710083
PNDLKLWNW	9	Unmodified	_PNDLKLWNW_					0	0	0			REV__SEL1L2|p.T662P|1|0.36|ENSG00000101251|chr20:13849568-13849568|T/G|missense_variant	REV__SEL1L2|p.T662P|1|0.36|ENSG00000101251|chr20:13849568-13849568|T/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	593.7056884765625	2	593.306198	1184.59784	-0.52351	-0.0003106	-0.17608	-0.00010447	-0.69959	-0.00041507	593.3060888306375	78.364	0.40604	79.109	78.931	79.337	0.74474					13	7	2	0	0	0	0.75842	1	29804	29804		13.042	7.7456	1	3251900	+		39213	27935	28777	29010	38196	38196					0.012928342258874181
PNEKKSKAVRL	11	Unmodified	_PNEKKSKAVRL_					0	0	0		ENSG00000163823|ENST00000296140|CCR1	ENSG00000163823|ENST00000296140|CCR1	ENSG00000163823|ENST00000296140|CCR1	MSMS	A375_MHC_IP_R1	1	635.4080810546875	2	635.385511	1268.75647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.12	1	110.12	109.62	110.62	0								0	0	0	0.16164	1	40382	40382		10.151	1.995	1				39214	6730	28778	29011	38197	38197					0.13284128134182538
PNEKNKPLDN	10	Unmodified	_PNEKNKPLDN_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MULTI-MSMS	A375_MHC_IP_R1	1	390.2677001953125	3	390.20341	1167.5884	0.01716	6.6959E-06	3.0157	0.0011767	3.0328	0.0011834	390.5397202629526	32.989	0.71014	32.989	32.734	33.445	0					30	13	4	0	0	0	0.67512	1	10739	10739		9.7643	0.52048	1	6557500			39215	3771	28779	29012	38198	38198					0.01131021149717526
PNENLELRAKE	11	Unmodified	_PNENLELRAKE_					0	0	0			REV__ENSG00000146352|ENST00000275162|CLVS2	REV__ENSG00000146352|ENST00000275162|CLVS2	MULTI-SECPEP	A375_MHC_IP_R1	1	437.6372985839844	3	438.233369	1311.67828	-0.44828	-0.00019645	0.39575	0.00017343	-0.052529	-2.302E-05	438.23355702992444	26.163	0.70913	26.163	25.714	26.423	0					23	13	3	0	0	0	0.97636	1	7775	7775		19.987	10.223	1	6800800	+		39216	19529	28780	29013	38199	38199					0.03490650758249103
PNFGPGFVND	10	Unmodified	_PNFGPGFVND_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.E4343Kfs*13|1|0.36|ENSG00000055609|chr7:152148900-152148900|C/-|frameshift_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-MSMS	A375_MHC_IP_R1	1	532.6431274414062	2	532.245806	1062.47706	-0.637	-0.00033904	-1.0773	-0.00057337	-1.7143	-0.00091241	532.2437388105196	31.338	0.55815	31.338	31.16	31.718	0					27	10	3	0	0	0	0.70925	1	10056	10056		8.1555	0.24537	1	7513300			39217	1271	28781	29014	38200	38200					-0.05167993487566491
PNFYIDIY	8	Unmodified	_PNFYIDIY_					0	0	0			REV__nc|ENSG00000169994|Q6PIF6-2|MYO7B	REV__nc|ENSG00000169994|Q6PIF6-2|MYO7B	MSMS	A375_MHC_IP_R1	1	522.6531982421875	2	522.755475	1043.4964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.05	1	107.05	106.55	107.55	0								0	0	0	0.16876	1	39285	39285		11.64	0	1		+		39218	20961	28782	29015	38201	38201					-0.023610371966469756
PNGASSDH	8	Unmodified	_PNGASSDH_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-SECPEP	A375_MHC_IP_R1	1	783.5850219726562	1	784.322022	783.314745	-0.13883	-0.00010889	3.6484	0.0028615	3.5096	0.0027526	784.3260391576455	116.42	0.25559	116.42	116.19	116.45	0					5	4	2	0	0	0	0.972	1	42628	42628		2.0598	0	1	2115200			39219	8550	28783	29016	38202	38202					-0.08557957169705332
PNGHYRRRRR	10	Unmodified	_PNGHYRRRRR_					0	0	0		nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E;ENSG00000198216|ENST00000367573|CACNA1E;CACNA1E|p.G2289R|1|0.16|ENSG00000198216|chr1:181798757-181798757|G/A|missense_variant	nc|ENSG00000198216|Q15878-2|CACNA1E	nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-MSMS	A375_MHC_IP_R1	1	684.7847290039062	2	684.385034	1366.75552	-0.86918	-0.00059486	0.15935	0.00010906	-0.70984	-0.0004858	684.3851531860516	132.38	1.1133	132.38	131.78	132.89	0					40	21	3	0	0	0	0.72658	1	50989	50989		0.40072	0.40072	1	5827000			39220	9243	28784	29017	38203	38203					0.08680771328477022
PNGHYRRRRR	10	Unmodified	_PNGHYRRRRR_					0	0	0		nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E;ENSG00000198216|ENST00000367573|CACNA1E;CACNA1E|p.G2289R|1|0.16|ENSG00000198216|chr1:181798757-181798757|G/A|missense_variant	nc|ENSG00000198216|Q15878-2|CACNA1E	nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	684.385034	1366.75552	-0.6157	-0.00042138	0.16875	0.00011549	-0.44695	-0.00030589	684.3850064751075	132.37	1.0667	132.55	131.85	132.92	0.18953	0.084875	9.0513E-06	NaN	0.40072	47	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3765600			39221	9243	28784	29017							0.08680771328477022
PNISTHEHL	9	Unmodified	_PNISTHEHL_					0	0	0		ENSG00000274529|ENST00000536498|SEBOX	ENSG00000274529|ENST00000536498|SEBOX	ENSG00000274529|ENST00000536498|SEBOX	MULTI-SECPEP	A375_MHC_IP_R1	1	524.1487426757812	2	524.26453	1046.51451	-0.56597	-0.00029672	-0.48142	-0.00025239	-1.0474	-0.00054911	524.2644084774089	33.174	0.65948	33.174	32.938	33.597	0					38	12	4	0	0	0	0.67483	1	10924	10924		10.074	8.4213	1	19003000			39222	10005	28785	29018	38204	38204					-0.0068890222196387185
PNKLMHCFRRR	11	Unmodified	_PNKLMHCFRRR_					0	0	0			REV__ENSG00000169599|ENST00000410022|NFU1	REV__ENSG00000169599|ENST00000410022|NFU1	MSMS	A375_MHC_IP_R1	1	729.8028564453125	2	729.390082	1456.76561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.708	1	93.708	93.208	94.208	0								0	0	0	0.16307	1	34445	34445		2.7352	0.45242	1		+		39223	20935	28786	29019	38205	38205					0.055498749471780684
PNLAQIDHEY	10	Unmodified	_PNLAQIDHEY_					0	0	0			REV__SPTBN2|p.S1853N|1|0.27|ENSG00000173898|chr11:66691291-66691291|C/T|missense_variant	REV__SPTBN2|p.S1853N|1|0.27|ENSG00000173898|chr11:66691291-66691291|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	400.97479248046875	3	400.527894	1198.56185	-0.18485	-7.4039E-05	0.78678	0.00031513	0.60192	0.00024109	400.8626710627424	20.355	0.35563	20.355	20.18	20.536	0					11	6	2	0	0	0	0.93873	1	5241	5241		7.9454	5.5106	1	567690	+		39224	28041	28787	29020	38206	38206					-0.029486677416116436
PNLFRFLS	8	Unmodified	_PNLFRFLS_					0	0	0			REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	497.6973571777344	2	497.279452	992.544351	-0.28364	-0.00014105	0.17704	8.8037E-05	-0.1066	-5.3009E-05	497.27946390038375	96.991	0.40503	96.991	96.833	97.238	0					11	7	2	0	0	0	0.90224	1	35588	35588		13.508	4.1604	1	779740	+		39225	28270	28788	29021	38207	38207					0.047780815140413324
PNLLQKTTIQ	10	Unmodified	_PNLLQKTTIQ_					0	0	0		ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1;nc|ENSG00000127980|O43933-2|PEX1;ENST00000476923.1_1_7:92140242-92143269:-|nuORF	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MSMS	A375_MHC_IP_R2	2	578.3453369140625	2	578.340238	1154.66592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.285	1	68.021	67.521	68.521	0.73631								0	0	0	0.15353	1	25489	25489		9.3831	2.66	1				39226	4114	28789	29022	38208	38208					0.09477659085882806
PNLPLKVKPT	10	Unmodified	_PNLPLKVKPT_					0	0	0		ENSG00000149480|ENST00000278823|MTA2;nc|ENSG00000149480|O94776-2|MTA2	ENSG00000149480|ENST00000278823|MTA2	ENSG00000149480|ENST00000278823|MTA2	MULTI-MSMS	A375_MHC_IP_R1	1	369.6026306152344	3	369.569253	1105.68593	0.48767	0.00018023	-0.16055	-5.9334E-05	0.32712	0.0001209	369.5691648757073	22.95	0.4015	22.95	22.723	23.125	0					14	7	2	0	0	0	0.72006	1	6196	6196		3.3196	0.24738	1	2407100			39227	5807	28790	29023	38209	38209					0.13731454816525002
PNNEKITVLY	10	Unmodified	_PNNEKITVLY_					0	0	0			REV__nc|ENSG00000156239|Q9Y5N5-2|N6AMT1	REV__nc|ENSG00000156239|Q9Y5N5-2|N6AMT1	MULTI-MSMS	A375_MHC_IP_R1	1	596.554931640625	2	595.824421	1189.63429	-0.42917	-0.00025571	0.12836	7.6478E-05	-0.30081	-0.00017923	595.8243986952701	59.087	0.56074	59.087	58.836	59.397	0					19	10	2	0	0	0	0.70925	1	21234	21234		8.1555	1.4324	1	4748300	+		39228	19972	28791	29024	38210	38210					0.04705666331938119
PNNEKITVLY	10	Unmodified	_PNNEKITVLY_					0	0	0			REV__nc|ENSG00000156239|Q9Y5N5-2|N6AMT1	REV__nc|ENSG00000156239|Q9Y5N5-2|N6AMT1	MULTI-SECPEP	A375_MHC_IP_R1	1	596.192138671875	2	595.824421	1189.63429	-0.42917	-0.00025571	0.12836	7.6478E-05	-0.30081	-0.00017923	595.8243986952701	59.087	0.56074	59.087	58.836	59.397	0					19	10	2	0	0	0	0.8528	1	21297	21297		16.149	0.90062	1	4748300	+		39229	19972	28791	29024	38211	38211					0.04705666331938119
PNNGTPQFKY	10	Unmodified	_PNNGTPQFKY_					0	0	0			REV__ENSG00000125734|ENST00000264080|GPR108	REV__ENSG00000125734|ENST00000264080|GPR108	MULTI-SECPEP	A375_MHC_IP_R2	2	388.955810546875	3	389.192734	1164.55637	-0.44318	-0.00017248	0.62505	0.00024327	0.18187	7.0784E-05	389.19290114026126	23.524	0.45567	24.155	24.029	24.485	0.63014					14	8	2	0	0	0	0.9269	1	7733	7733		3.5871	0.85186	1	3696200	+		39230	18358	28792	29025	38212	38212					-0.01932346533430973
PNNIFGNRNLL	11	Unmodified	_PNNIFGNRNLL_					0	0	0		ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	MULTI-SECPEP	A375_MHC_IP_R1	1	636.7459716796875	2	636.346386	1270.67822	-0.51051	-0.00032486	0.22611	0.00014389	-0.2844	-0.00018098	636.3465678704	82.379	0.71048	82.379	82.062	82.772	0					23	13	2	0	0	0	0.0136	1	30079	30079		171.09	143.46	1	13724000			39231	1047	28793	29026	38213	38213					0.053706955489587926
PNNYYRDF	8	Unmodified	_PNNYYRDF_					0	0	0		tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1	tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1	tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	544.90771484375	2	544.743431	1087.47231	-0.99866	-0.00054402	-0.11748	-6.3998E-05	-1.1161	-0.00060801	545.2449195069382	54.697	0.3548	55.448	55.169	55.523	0.75075					8	6	2	0	0	0	0.972	1	20628	20628		4.756	0	1	719340			39232	29968	28794	29027	38214	38214					-0.06792877630323346
PNPPSTHF	8	Unmodified	_PNPPSTHF_					0	0	0		ENSG00000183434|ENST00000310125|TFDP3;TFDP3|p.G74E|1|0.29|ENSG00000183434|chrX:133218039-133218039|C/T|missense_variant	ENSG00000183434|ENST00000310125|TFDP3	ENSG00000183434|ENST00000310125|TFDP3	MULTI-SECPEP	A375_MHC_IP_R1	1	449.1167297363281	2	448.716685	895.418816	-0.42983	-0.00019287	0.052384	2.3506E-05	-0.37745	-0.00016937	448.71670674596606	36.636	0.4061	36.636	36.489	36.895	0					12	7	2	0	0	0	0.86765	1	12299	12299		24.674	7.7316	1	3384300			39233	8494	28795	29028	38215	38215					-0.03307630342203538
PNQRKRAWP	9	Unmodified	_PNQRKRAWP_					0	0	0			REV__LILRB5|p.L65F|1|0.22|ENSG00000105609|chr19:54256651-54256651|G/A|missense_variant	REV__LILRB5|p.L65F|1|0.22|ENSG00000105609|chr19:54256651-54256651|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	576.7247314453125	2	576.822881	1151.63121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.912	1	36.675	36.175	37.175	0.76338								0	0	0	0.15486	1	13047	13047		12.532	1.7076	1		+		39234	17394	28796	29029	38216	38216					0.06145880788449176
PNTKKRLG	8	Unmodified	_PNTKKRLG_					0	0	0			REV__ENST00000422426.5_1_22:36545122-36545391:-|nuORF	REV__ENST00000422426.5_1_22:36545122-36545391:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	457.6824951171875	2	457.282526	912.550499	-0.55193	-0.00025239	0.5324	0.00024346	-0.019537	-8.934E-06	457.2826665868474	23.559	0.3057	23.559	23.432	23.737	0					9	5	3	0	0	0	0.7773	1	6541	6541		4.756	0	1	4037200	+		39235	24602	28797	29030	38217	38217					0.09072599745570642
PNTRLKTKMKT	11	Unmodified	_PNTRLKTKMKT_					0	0	0			REV__nc|ENSG00000159263|Q14190-2|SIM2	REV__nc|ENSG00000159263|Q14190-2|SIM2	MULTI-SECPEP	A375_MHC_IP_R2	2	440.327392578125	3	439.927223	1316.75984	-0.30236	-0.00013302	0.96406	0.00042412	0.66171	0.0002911	439.9275342195721	73.828	0.45916	74.565	74.347	74.806	0.73699					17	8	3	0	0	0	0.99176	1	28039	28039		12.929	7.0606	1	1661300	+		39236	20111	28798	29031	38218	38218					0.11413054916533838
PNVGHLVLKY	10	Unmodified	_PNVGHLVLKY_					0	0	0		ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	MULTI-SECPEP	A375_MHC_IP_R2	2	379.96044921875	3	380.557236	1138.64988	-0.30878	-0.00011751	3.2684	0.0012438	2.9596	0.0011263	380.55833229654564	23.306	0.25271	23.936	23.777	24.029	0.63014					7	4	2	0	0	0	0.64716	1	7492	7492		19.626	9.4754	1	1638600			39237	9350	28799	29032	38219	38219					0.08609997639655376
PNWVNLQKFW	10	Unmodified	_PNWVNLQKFW_					0	0	0		ENST00000341980.10_1_11:111630583-111631609:-|nuORF	ENST00000341980.10_1_11:111630583-111631609:-|nuORF	ENST00000341980.10_1_11:111630583-111631609:-|nuORF	MSMS	A375_MHC_IP_R1	1	666.3468017578125	2	666.348397	1330.68224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.427	1	80.427	79.927	80.927	0								0	0	0	0.15451	1	29369	29369		6.2058	0.9089	1				39238	10874	28800	29033	38220	38220					0.030127850426652003
PPAAGAGG	8	Unmodified	_PPAAGAGG_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-SECPEP	A375_MHC_IP_R2	2	597.7011108398438	1	597.299101	596.291825	-0.62942	-0.00037595	2.3438	0.0013999	1.7144	0.001024	597.3008398187338	81.771	0.35455	82.514	82.229	82.584	0.74293					9	6	2	0	0	0	0.972	1	31068	31068		0.79363	0	1	1829500			39239	14448	28801	29034	38221	38221					-0.02246931496506477
PPAGGRPV	8	Unmodified	_PPAGGRPV_					0	0	0			REV__ENST00000218104.5_1_X:152990328-152990616:+|nuORF	REV__ENST00000218104.5_1_X:152990328-152990616:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	376.1156921386719	2	375.716488	749.418422	0.16342	6.1399E-05	-1.6915	-0.00063553	-1.5281	-0.00057413	375.7157305876296	70.961	0.30341	71.695	71.503	71.806	0.73421					8	5	2	0	0	0	0.77797	1	26930	26930		2.3027	0	1	2214500	+		39240	23042	28802	29035	38222	38222					0.033689947286120514
PPAGKKAL	8	Unmodified	_PPAGKKAL_					0	0	0		ENSG00000133101|ENST00000255465|CCNA1;nc|ENSG00000133101|P78396-2|CCNA1;nc|ENSG00000133101|P78396|CCNA1	ENSG00000133101|ENST00000255465|CCNA1	ENSG00000133101|ENST00000255465|CCNA1	MULTI-MSMS	A375_MHC_IP_R1	1	391.6502380371094	2	391.250163	780.485774	0.19828	7.7577E-05	0.057606	2.2538E-05	0.25588	0.00010011	391.25010567137156	28.465	0.65684	28.465	28.238	28.895	0					33	12	4	0	0	0	0.7779	1	8771	8771		2.5775	0	1	18124000			39241	4484	28803	29036	38223	38223					0.08675024939566356
PPAQCLPV	8	Unmodified	_PPAQCLPV_					0	0	0		ENST00000515743.5_1_4:10086146-10093179:-|nuORF	ENST00000515743.5_1_4:10086146-10093179:-|nuORF	ENST00000515743.5_1_4:10086146-10093179:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	825.8810424804688	1	824.433486	823.42621	-0.7288	-0.00060085	2.7783	0.0022905	2.0495	0.0016897	824.4349527755155	141.05	0.25908	141.05	140.96	141.22	0					5	4	2	0	0	0	0.77717	1	54162	54162		5.2307	2.3415	1	388410			39242	12956	28804	29037	38224	38224					0.007433859338561888
PPATPPPTRL	10	Unmodified	_PPATPPPTRL_					0	0	0		ENST00000389425.7_1_15:48010729-48010906:+|nuORF	ENST00000389425.7_1_15:48010729-48010906:+|nuORF	ENST00000389425.7_1_15:48010729-48010906:+|nuORF	MSMS	A375_MHC_IP_R1	1	523.7025756835938	2	523.803291	1045.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.91	1	122.91	122.41	123.41	0								0	0	0	0.15451	1	45845	45845		6.2058	1.8765	1				39243	11399	28805	29038	38225	38225					0.07105735714230832
PPCSPKDSVSL	11	Unmodified	_PPCSPKDSVSL_					0	0	0		chr8:53888747-53913497|219|11.82|0.12|6.65|+|0|TE_info:L1ME3,L1ME3_dup4287,L1,LINE,donor,-,53888651,53888747|None,RGS20|3	chr8:53888747-53913497|219|11.82|0.12|6.65|+|0|TE_info:L1ME3,L1ME3_dup4287,L1,LINE,donor,-,53888651,53888747|None,RGS20|3	chr8:53888747-53913497|219|11.82|0.12|6.65|+|0|TE_info:L1ME3,L1ME3_dup4287,L1,LINE,donor,-,53888651,53888747|None,RGS20|3	MULTI-SECPEP	A375_MHC_IP_R1	1	377.9476013183594	3	377.190113	1128.54851	0.21726	8.195E-05	-1.34	-0.00050544	-1.1227	-0.00042349	377.52403551460895	19.546	0.25439	19.546	19.42	19.674	0					7	4	2	0	0	0	0.9836	1	4844	4844		6.2344	5.1246	1	965110			39244	509	28806	29039	38226	38226					-0.010622418452157945
PPDIEKREL	9	Unmodified	_PPDIEKREL_					0	0	0			REV__nc|ENSG00000065675|Q04759-3|PRKCQ	REV__nc|ENSG00000065675|Q04759-3|PRKCQ	MULTI-SECPEP	A375_MHC_IP_R1	1	366.6051025390625	3	366.204751	1095.59242	0.10008	3.665E-05	0.86235	0.0003158	0.96243	0.00035245	366.2051600428805	27.68	0.65596	27.68	27.381	28.037	0					30	12	3	0	0	0	0.50702	1	8444	8444		23.79	5.0686	1	5882000	+		39245	16504	28807	29040	38227	38227					0.04845110643418593
PPDLLVTNDNE	11	Unmodified	_PPDLLVTNDNE_					0	0	0			REV__nc|ENSG00000171603|O94985-2|CLSTN1	REV__nc|ENSG00000171603|O94985-2|CLSTN1	MULTI-MSMS	A375_MHC_IP_R1	1	613.1900634765625	2	613.7986	1225.58265	0.049235	3.022E-05	-0.56331	-0.00034576	-0.51407	-0.00031554	613.7981439518411	48.419	1.2651	48.419	47.97	49.235	0					34	24	2	0	0	0	0.7039	1	17079	17079		15.248	0	1	9457400	+		39246	21081	28808	29041	38228	38228					-0.021121221526072986
PPDPLGQMTF	10	Unmodified	_PPDPLGQMTF_					0	0	0			REV__ENSG00000117245|ENST00000400463|KIF17	REV__ENSG00000117245|ENST00000400463|KIF17	MULTI-SECPEP	A375_MHC_IP_R1	1	552.1233520507812	2	551.765517	1101.51648	-0.50409	-0.00027814	-0.91223	-0.00050334	-1.4163	-0.00078148	551.7654785078072	73.059	0.9128	73.059	72.474	73.386	0					29	17	3	0	0	0	0.24752	1	26627	26627		53.833	0	1	1705500	+		39247	17999	28809	29042	38229	38229					-0.030216095283549294
PPEHKVHLEDA	11	Unmodified	_PPEHKVHLEDA_					0	0	0			REV__ENSG00000166024|ENST00000298999|R3HCC1L	REV__ENSG00000166024|ENST00000298999|R3HCC1L	MSMS	A375_MHC_IP_R2	2	424.6169128417969	3	424.55081	1270.6306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.866	1	28.545	28.045	29.045	0.67857								0	0	0	0.16232	1	9572	9572		6.6235	0.43161	1		+		39248	20646	28810	29043	38230	38230					0.006109965581117649
PPEKKLRRY	9	Unmodified	_PPEKKLRRY_					0	0	0		ENST00000530915.1_3_11:78075116-78128823:-|nuORF;ENST00000534823.1_1_11:77991605-78128766:-|nuORF;GAB2-CERS6|2|fusion;GAB2-CERS6|1|fusion;ENSG00000033327|ENST00000361507|GAB2	ENST00000530915.1_3_11:78075116-78128823:-|nuORF	ENST00000530915.1_3_11:78075116-78128823:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	396.63165283203125	3	396.240018	1185.69823	0.049234	1.9508E-05	-0.71678	-0.00028402	-0.66755	-0.00026451	396.57428706666406	42.428	0.30257	42.428	42.285	42.587	0					6	5	2	0	0	0	0.81039	1	14751	14751		0.26902	0	1	561630			39249	1124	28811	29044	38231	38231					0.11280491279580929
PPEPKASSQSP	11	Unmodified	_PPEPKASSQSP_					0	0	0		ENST00000587439.5_1_19:36110588-36110915:+|nuORF	ENST00000587439.5_1_19:36110588-36110915:+|nuORF	ENST00000587439.5_1_19:36110588-36110915:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	375.9242248535156	3	375.524261	1123.55095	0.29786	0.00011186	0.73413	0.00027569	1.032	0.00038754	375.52456141838576	23.189	0.45716	23.189	22.974	23.432	0					16	8	3	0	0	0	0.92392	1	6341	6341		7.4291	0	1	8476900			39250	13747	28812	29045	38232	38232					-0.005880701158957891
PPERKYSVW	9	Unmodified	_PPERKYSVW_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2	ENSG00000075624|ENST00000646664|ACTB;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-SECPEP	A375_MHC_IP_R1	1	387.9319763183594	3	387.873224	1160.59784	-0.072441	-2.8098E-05	1.2496	0.0004847	1.1772	0.0004566	387.873705318706	23.743	0.4575	23.743	23.381	23.838	0					12	8	2	0	0	0	0.65246	1	6413	6413		15.248	4.4246	1	2589000			39251	1615;5418	28813	29046	38233	38233					0.023968342258967823
PPETSVRSGPR	11	Unmodified	_PPETSVRSGPR_					0	0	0			REV__ZNF592|p.P943S|1|0.25|ENSG00000166716|chr15:84798678-84798678|C/T|missense_variant	REV__ZNF592|p.P943S|1|0.25|ENSG00000166716|chr15:84798678-84798678|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	395.6451721191406	3	394.879038	1181.61528	0.29874	0.00011797	2.7864	0.0011003	3.0851	0.0012182	395.2145379762049	44.445	0.25586	44.445	44.267	44.523	0					6	4	2	0	0	0	0.98711	1	15444	15444		12.929	8.2128	1	983330	+		39252	29048	28814	29047	38234	38234					0.03174129760895994
PPEWIRYHRYH	11	Unmodified	_PPEWIRYHRYH_					0	0	0		ENSG00000137193|ENST00000373509|PIM1;ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1;ENST00000479509.1_1_6:37140348-37141864:+|nuORF	ENSG00000137193|ENST00000373509|PIM1	ENSG00000137193|ENST00000373509|PIM1	MSMS	A375_MHC_IP_R2	2	518.6622924804688	3	518.596865	1552.76877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.17	1	47.932	47.432	48.432	0.76128								0	0	0	0.16336	1	17681	17681		1.2148	0.10508	1				39253	4867	28815	29048	38235	38235					0.01449164597215713
PPFAAAAA	8	Unmodified	_PPFAAAAA_					0	0	0			REV__ENSG00000186790|ENST00000335071|FOXE3	REV__ENSG00000186790|ENST00000335071|FOXE3	MSMS	A375_MHC_IP_R2	2	358.2427062988281	2	358.192314	714.370075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.3	1	17.897	17.397	18.397	0.59616								0	0	0	0.16876	1	5081	5081		0	0	1		+		39254	21986	28816	29049	38236	38236					0.0014650108869318501
PPFFPPPLPR	10	Unmodified	_PPFFPPPLPR_					0	0	0		ENST00000605886.1_1_1:156611729-156611945:-|nuORF	ENST00000605886.1_1_1:156611729-156611945:-|nuORF	ENST00000605886.1_1_1:156611729-156611945:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	388.63311767578125	3	388.890327	1163.64915	-0.13611	-5.2933E-05	0.16746	6.5124E-05	0.031349	1.2191E-05	388.8903221760943	67.608	1.6786	67.608	66.734	68.412	0					39	32	2	0	0	0	0.69306	1	24272	24272		8.4443	0	1	836250			39255	13908	28817	29050	38237	38237					0.07387202990594233
PPFLLPIL	8	Unmodified	_PPFLLPIL_					0	0	0		nc|ENSG00000066056|P35590-3|TIE1;nc|ENSG00000066056|P35590-2|TIE1;TIE1|p.T782Pfs*35|1|0.09|ENSG00000066056|chr1:43313902-43313902|A/-|frameshift_variant;ENSG00000066056|ENST00000372476|TIE1	nc|ENSG00000066056|P35590-3|TIE1	nc|ENSG00000066056|P35590-3|TIE1	MSMS	A375_MHC_IP_R2	2	455.6935119628906	2	455.29404	908.573526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.699	1	18.295	17.795	18.795	0.59616								0	0	0	0.16876	1	5219	5219		0.79363	0	1				39256	1402	28818	29051	38238	38238					0.11558225810313161
PPFLLPIL	8	Unmodified	_PPFLLPIL_					0	0	0		nc|ENSG00000066056|P35590-3|TIE1;nc|ENSG00000066056|P35590-2|TIE1;TIE1|p.T782Pfs*35|1|0.09|ENSG00000066056|chr1:43313902-43313902|A/-|frameshift_variant;ENSG00000066056|ENST00000372476|TIE1	nc|ENSG00000066056|P35590-3|TIE1	nc|ENSG00000066056|P35590-3|TIE1	MSMS	A375_MHC_IP_R2	2	455.6935119628906	2	455.29404	908.573526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.232	1	18.835	18.335	19.335	0.60308								0	0	0	0.16876	1	5412	5412		0.79363	0	1				39257	1402	28818	29051	38239	38239					0.11558225810313161
PPFNEPDF	8	Unmodified	_PPFNEPDF_					0	0	0		nc|ENSG00000175505|Q9UBD9-2|CLCF1;ENSG00000175505|ENST00000312438|CLCF1	nc|ENSG00000175505|Q9UBD9-2|CLCF1	nc|ENSG00000175505|Q9UBD9-2|CLCF1	MULTI-MSMS	A375_MHC_IP_R1	1	482.1156921386719	2	481.71635	961.418148	-0.50642	-0.00024395	-1.1275	-0.00054313	-1.6339	-0.00078708	481.71599299181037	90.204	0.45592	90.204	89.931	90.387	0					21	8	3	0	0	0	0.77488	1	33125	33125		13.508	1.8676	1	2519300			39258	7966	28819	29052	38240	38240					-0.06410469781906158
PPFRRRRY	8	Unmodified	_PPFRRRRY_					0	0	0			REV__ENSG00000065978|ENST00000321358|YBX1	REV__ENSG00000065978|ENST00000321358|YBX1	MULTI-SECPEP	A375_MHC_IP_R1	1	383.6046142578125	3	383.224703	1146.65228	-0.016437	-6.299E-06	0.7134	0.00027339	0.69697	0.00026709	383.22409668241	26.331	0.20266	26.331	26.17	26.373	0					5	3	2	0	0	0	0.972	1	7847	7847		10.824	0.67336	1	1474000	+		39259	16506	28820	29053	38241	38241					0.08481890887992449
PPGAARGR	8	Unmodified	_PPGAARGR_					0	0	0		ENSG00000113448|ENST00000340635|PDE4D	ENSG00000113448|ENST00000340635|PDE4D	ENSG00000113448|ENST00000340635|PDE4D	MULTI-MSMS	A375_MHC_IP_R1	1	391.6249084472656	2	391.225011	780.435469	0.13467	5.2686E-05	0.28346	0.0001109	0.41813	0.00016358	391.22501289305285	94.688	4.2641	94.688	91.35	95.614	0					120	83	2	0	0	0	0.77839	1	34856	34856		0.79363	0	1	4325300			39260	3152	28821	29054	38242	38242					0.03646915334422829
PPGAGPRR	8	Unmodified	_PPGAGPRR_					0	0	0		ENST00000406787.7_1_11:28131755-28131893:+|nuORF	ENST00000406787.7_1_11:28131755-28131893:+|nuORF	ENST00000406787.7_1_11:28131755-28131893:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	404.6327819824219	2	404.232836	806.45112	0.13635	5.5119E-05	-0.028735	-1.1616E-05	0.10762	4.3503E-05	404.2327306115917	117.6	2.5339	118.21	117.02	119.56	0.60909					106	49	4	0	0	0	0.77839	1	44245	44245		0.79363	0	1	367100000			39261	11603	28822	29055	38243	38243					0.04015201851461825
PPGAIPPALHL	11	Unmodified	_PPGAIPPALHL_					0	0	0		ENST00000537641.5_1_11:61183575-61183878:-|nuORF;ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7	ENST00000537641.5_1_11:61183575-61183878:-|nuORF	ENST00000537641.5_1_11:61183575-61183878:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	360.9352111816406	3	361.550082	1081.62842	0.64534	0.00023332	-1.3591	-0.0004914	-0.7138	-0.00025807	361.5496983353529	48.975	0.40491	48.975	48.679	49.084	0					9	7	2	0	0	0	0.99048	1	17320	17320		8.4443	0	1	1102800			39262	5810	28823	29056	38244	38244					0.09086612610917655
PPGFELSYRL	10	Unmodified	_PPGFELSYRL_					0	0	0			REV__nc|ENSG00000117114|O95490-3|ADGRL2	REV__nc|ENSG00000117114|O95490-3|ADGRL2	MULTI-SECPEP	A375_MHC_IP_R1	1	590.1243286132812	2	589.813856	1177.61316	-0.28957	-0.00017079	-0.10236	-6.0376E-05	-0.39194	-0.00023117	589.813726296245	73.196	0.91132	73.196	72.779	73.69	0					33	17	3	0	0	0	0.83355	1	26816	26816		12.241	0	1	3089900	+		39263	17992	28824	29057	38245	38245					0.03145701023095171
PPGGGGAG	8	Unmodified	_PPGGGGAG_					0	0	0		ENSG00000164588|ENST00000303230|HCN1;ENST00000478597.5_1_9:140007734-140009165:-|nuORF	ENSG00000164588|ENST00000303230|HCN1;REV__ENSG00000198853|ENST00000361226|RUSC2	ENSG00000164588|ENST00000303230|HCN1	MULTI-MSMS	A375_MHC_IP_R1	1	571.20166015625	1	569.267801	568.260525	-0.14531	-8.2719E-05	1.7702	0.0010077	1.6249	0.00092499	569.2747151820713	45.784	1.0104	45.784	45.434	46.444	0					43	19	4	0	0	0	0.77861	1	16064	16064		0	0	1	13984000			39264	6851;22432	28825	29058	38246	38246					-0.040875045306052016
PPGGQPLL	8	Unmodified	_PPGGQPLL_					0	0	0		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	390.12628173828125	2	389.726521	777.438489	-0.73609	-0.00028687	0.7343	0.00028618	-0.0017828	-6.948E-07	389.7267737766569	36.826	0.55797	37.597	37.359	37.917	0.7709					21	10	3	0	0	0	0.82569	1	13428	13428		28.173	0	1	5012900			39265	2789	28826	29059	38247	38247					0.04086745668575986
PPGHLVST	8	Unmodified	_PPGHLVST_					0	0	0			REV__nc|ENSG00000203780|Q8TC84-3|FANK1	REV__nc|ENSG00000203780|Q8TC84-3|FANK1	MULTI-SECPEP	A375_MHC_IP_R2	2	807.8340454101562	1	807.435929	806.428653	-0.69532	-0.00056142	0.41139	0.00033217	-0.28392	-0.00022925	807.4353376412672	144.52	0.14938	144.54	144.46	144.61	0.024414					5	3	2	0	0	0	0.972	1	56464	56464		0.79363	0	1	437740	+		39266	27452	28827	29060	38248	38248					0.017695576632036136
PPGKLTRPSPG	11	Unmodified	_PPGKLTRPSPG_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-SECPEP	A375_MHC_IP_R1	1	554.2191772460938	2	553.819473	1105.62439	-0.72776	-0.00040305	-0.024149	-1.3374E-05	-0.75191	-0.00041642	553.8194613208875	32.912	0.81018	32.912	32.634	33.445	0					33	15	4	0	0	0	0.80621	1	10650	10650		24.991	7.8781	1	37259000			39267	9519	28828	29061	38249	38249					0.07580523117235316
PPGKLTRPSPG	11	Unmodified	_PPGKLTRPSPG_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-SECPEP	A375_MHC_IP_R2	2	554.2191772460938	2	553.819473	1105.62439	-0.79709	-0.00044145	0.017509	9.6968E-06	-0.77958	-0.00043175	553.8194570949828	32.199	0.56109	32.936	32.704	33.265	0.73692					33	10	4	0	0	0	0.80621	1	11415	11415		31.268	2.1868	1	36960000			39268	9519	28828	29061	38250	38250					0.07580523117235316
PPGKVKLIPL	10	Unmodified	_PPGKVKLIPL_					0	0	0		ENSG00000187833|ENST00000409561|C2orf78	ENSG00000187833|ENST00000409561|C2orf78	ENSG00000187833|ENST00000409561|C2orf78	MSMS	A375_MHC_IP_R2	2	354.6015319824219	3	354.574227	1060.70085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.823	1	38.597	38.097	39.097	0.77451								0	0	0	0.15583	1	13867	13867		1.9064	0.83491	1				39269	8862	28829	29062	38251	38251					0.17292946684528943
PPGLDSPIWF	10	Unmodified	_PPGLDSPIWF_					0	0	0		ENSG00000171611|ENST00000304672|PTCRA	ENSG00000171611|ENST00000304672|PTCRA	ENSG00000171611|ENST00000304672|PTCRA	MULTI-SECPEP	A375_MHC_IP_R1	1	565.1895141601562	2	564.78985	1127.56515	-0.72319	-0.00040845	0.83611	0.00047223	0.11292	6.3774E-05	564.790127072014	137.72	0.25375	137.72	137.54	137.79	0					10	4	3	0	0	0	0.93404	1	53026	53026		1.8442	0	1	1484200			39270	7621	28830	29063	38252	38252					0.006466271030376447
PPGPRRGA	8	Unmodified	_PPGPRRGA_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.P1556Afs*122|1|0.27|ENSG00000272333|chr19:35728865-35728866|-/A|frameshift_variant;KMT2B|p.G1602Rfs*76|1|0.53|ENSG00000272333|chr19:35729180-35729181|-/T|frameshift_variant;KMT2B|p.P1040S|1|0.21|ENSG00000272333|chr19:35723791-35723791|C/T|missense_variant;KMT2B|p.P1040L|1|0.21|ENSG00000272333|chr19:35723792-35723792|C/T|missense_variant	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MULTI-MSMS	A375_MHC_IP_R1	1	404.6327209472656	2	404.232836	806.45112	-0.34592	-0.00013983	0.95436	0.00038578	0.60844	0.00024595	404.23311210970974	118.2	2.2833	118.2	117.31	119.59	0					86	44	4	0	0	0	0.77839	1	43173	43173		0.79363	0	1	344180000			39271	9990	28831	29064	38253	38253					0.040152018514731935
PPHGHPGG	8	Unmodified	_PPHGHPGG_					0	0	0			REV__ENST00000562977.1_1_16:28962332-28970171:+|nuORF	REV__ENST00000562977.1_1_16:28962332-28970171:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	755.7608642578125	1	755.358348	754.351071	-0.86057	-0.00065004	3.1371	0.0023697	2.2766	0.0017196	755.3613282374308	144.49	0.13986	144.49	144.45	144.59	0					6	4	2	0	0	0	0.77861	1	55434	55434		0	0	1	358090	+		39272	26198	28832	29065	38254	38254					-0.03593035482322193
PPHGHPGG	8	Unmodified	_PPHGHPGG_					0	0	0			REV__ENST00000562977.1_1_16:28962332-28970171:+|nuORF	REV__ENST00000562977.1_1_16:28962332-28970171:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	755.358348	754.351071	-0.86057	-0.00065004	3.1371	0.0023697	2.2766	0.0017196	755.3613282374308	144.49	0.13986	144.49	144.45	144.59	0	-0.024523	-7.1476E-05	NaN	0	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	358090	+		39273	26198	28832	29065							-0.03593035482322193
PPHGHPGG	8	Unmodified	_PPHGHPGG_					0	0	0			REV__ENST00000562977.1_1_16:28962332-28970171:+|nuORF	REV__ENST00000562977.1_1_16:28962332-28970171:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	755.358348	754.351071	-0.69635	-0.00052599	3.2749	0.0024737	2.5785	0.0019477	755.3613290842109	144.52	0.19632	144.54	144.42	144.61	0.024414	0.024523	3.2573E-05	NaN	0	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	560700	+		39274	26198	28832	29065							-0.03593035482322193
PPHLPTAASV	10	Unmodified	_PPHLPTAASV_					0	0	0		ENST00000392225.7_1_19:35616099-35617731:-|nuORF	ENST00000392225.7_1_19:35616099-35617731:-|nuORF	ENST00000392225.7_1_19:35616099-35617731:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	495.6971740722656	2	495.274367	988.53418	-0.7777	-0.00038518	0.28384	0.00014058	-0.49386	-0.0002446	495.274521941452	60.948	2.1722	61.693	61.364	63.536	0.74503					89	42	5	0	0	0	0.72086	1	23757	23757		24.021	16.731	1	75717000			39275	11417	28833	29066	38255	38255					0.03945473788780873
PPHPPPPPP	9	Unmodified	_PPHPPPPPP_					0	0	0		ENSG00000048991|ENST00000683871|R3HDM1;nc|ENSG00000048991|Q15032-3|R3HDM1;nc|ENSG00000048991|Q15032|R3HDM1;nc|ENSG00000048991|Q15032-4|R3HDM1;nc|ENSG00000048991|Q15032-2|R3HDM1;nc|ENSG00000175879|P13378-2|HOXD8;ENSG00000175879|ENST00000313173|HOXD8;ENST00000261716.7_1_17:27717806-27778530:+|nuORF;ENST00000424808.6_1_8:66582187-66620357:+|nuORF;ENSG00000066855|ENST00000262146|MTFR1;nc|ENSG00000066855|Q15390-2|MTFR1;ENSG00000163064|ENST00000295206|EN1	ENSG00000048991|ENST00000683871|R3HDM1;ENSG00000163064|ENST00000295206|EN1	ENSG00000048991|ENST00000683871|R3HDM1	MULTI-MSMS	A375_MHC_IP_R1	1	467.1526794433594	2	466.75307	931.491587	-0.35449	-0.00016546	-0.0226	-1.0549E-05	-0.37709	-0.00017601	466.75296048697294	25.11	4.8057	25.11	24.647	29.453	0					182	94	4	0	0	0	0.0095977	2	7163	7163;7446		109.15	0	1	31506000			39276	1218;6628	28834	29067	38256;38257	38256					0.0231012345121826
PPHSLNYKSE	10	Unmodified	_PPHSLNYKSE_					0	0	0		ENSG00000173068|ENST00000380672|BNC2;nc|ENSG00000173068|Q6ZN30-2|BNC2	ENSG00000173068|ENST00000380672|BNC2	ENSG00000173068|ENST00000380672|BNC2	MSMS	A375_MHC_IP_R2	2	391.13323974609375	3	391.196256	1170.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.96	1	111.7	111.2	112.2	0.73692								0	0	0	0.15557	1	41847	41847		1.3296	0.36737	1				39277	7764	28835	29068	38258	38258					-0.011523638790094992
PPHSVNWSCWW	11	Unmodified	_PPHSVNWSCWW_					0	0	0		ENST00000588385.5_1_19:36606925-36607066:+|nuORF	ENST00000588385.5_1_19:36606925-36607066:+|nuORF	ENST00000588385.5_1_19:36606925-36607066:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	467.2729797363281	3	466.873118	1397.59753	-0.4239	-0.00019791	0.049533	2.3125E-05	-0.37437	-0.00017478	466.8735770819612	25.689	0.30444	25.689	25.562	25.866	0					12	5	3	0	0	0	1.001	1	7579	7579		0.50596	0.051438	1	3382400			39278	13761	28836	29069	38259	38259					-0.08536908765609041
PPHSVNWSCWW	11	Unmodified	_PPHSVNWSCWW_					0	0	0		ENST00000588385.5_1_19:36606925-36607066:+|nuORF	ENST00000588385.5_1_19:36606925-36607066:+|nuORF	ENST00000588385.5_1_19:36606925-36607066:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	466.873118	1397.59753	-1.0666	-0.00049796	0.88999	0.00041551	-0.17659	-8.2447E-05	466.8736152536934	25.069	0.35662	25.712	25.568	25.924	0.64368	0.011724	0.00013292	NaN	1.4551	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2015100			39279	13761	28836	29069							-0.08536908765609041
PPIAPPAPLPV	11	Unmodified	_PPIAPPAPLPV_					0	0	0			REV__ENST00000354416.7_1_X:118753668-118753848:-|nuORF	REV__ENST00000354416.7_1_X:118753668-118753848:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	535.2257080078125	2	534.826235	1067.63792	-1.3125	-0.00070197	0.43125	0.00023065	-0.88126	-0.00047132	535.3278778417662	37.274	0.30474	38.045	37.867	38.171	0.7709					11	5	3	0	0	0	0.99526	1	13663	13663		3.5965	2.995	1	3930400	+		39280	23812	28837	29070	38260	38260					0.10680380896451425
PPIDRSTTFY	10	Unmodified	_PPIDRSTTFY_					0	0	0			REV__ENSG00000141956|ENST00000398548|PRDM15	REV__ENSG00000141956|ENST00000398548|PRDM15	MULTI-SECPEP	A375_MHC_IP_R2	2	399.959228515625	3	399.536389	1195.58734	-0.43456	-0.00017362	0.18458	7.3745E-05	-0.24998	-9.9878E-05	399.5362857571867	24.696	0.6591	25.339	25.06	25.719	0.64368					23	12	3	0	0	0	0.92227	1	8184	8184		5.0475	0	1	6643600	+		39281	19289	28838	29071	38261	38261					-0.0026319321921164374
PPIKVSDTNKG	11	Unmodified	_PPIKVSDTNKG_					0	0	0			REV__ENST00000420826.6_1_17:73164007-73164178:-|nuORF	REV__ENST00000420826.6_1_17:73164007-73164178:-|nuORF	MSMS	A375_MHC_IP_R1	1	385.9206237792969	3	385.883789	1154.62954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.191	1	20.191	19.691	20.691	0								0	0	0	0.16176	1	5144	5144		7.846	3.3172	1		+		39282	24575	28839	29072	38262	38262					0.058407821891933054
PPLARNRYR	9	Unmodified	_PPLARNRYR_					0	0	0		ENST00000568500.1_1_16:30709080-30709953:-|nuORF	ENST00000568500.1_1_16:30709080-30709953:-|nuORF	ENST00000568500.1_1_16:30709080-30709953:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	381.6089172363281	3	381.55623	1141.64686	0.11898	4.5399E-05	-1.1517	-0.00043944	-1.0327	-0.00039404	381.55573805210764	37.948	0.25585	37.948	37.862	38.118	0					6	4	2	0	0	0	0.69884	1	12798	12798		7.1017	0.90987	1	917840			39283	13580	28840	29073	38263	38263					0.08170167305502218
PPLDGSGSHG	10	Unmodified	_PPLDGSGSHG_					0	0	0			REV__ENST00000397881.7_2_19:10197589-10201972:+|nuORF	REV__ENST00000397881.7_2_19:10197589-10201972:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	462.61407470703125	2	462.214506	922.414459	-0.43913	-0.00020297	-0.43014	-0.00019882	-0.86927	-0.00040179	462.21419761835494	64.473	0.56129	65.213	64.902	65.463	0.74022					21	10	3	0	0	0	0.70496	1	24421	24421		10.074	1.3285	1	2492300	+		39284	24365	28841	29074	38264	38264					-0.049851395557539036
PPLGLEDAL	9	Unmodified	_PPLGLEDAL_					0	0	0			REV__ENSG00000182791|ENST00000333861|CCDC87	REV__ENSG00000182791|ENST00000333861|CCDC87	MULTI-SECPEP	A375_MHC_IP_R1	1	462.64532470703125	2	462.755475	923.496398	-0.1328	-6.1453E-05	0.47999	0.00022212	0.3472	0.00016067	462.75541773218026	51.315	0.25399	51.315	51.119	51.373	0					6	4	2	0	0	0	0.73363	1	18226	18226		15.847	15.847	1	378480	+		39285	21709	28842	29075	38265	38265					0.031589628033202644
PPLKLFLEGP	10	Unmodified	_PPLKLFLEGP_					0	0	0			REV__KMT2D|p.P2390Rfs*36|1|0.37|ENSG00000167548|chr12:49040601-49040601|G/-|frameshift_variant	REV__KMT2D|p.P2390Rfs*36|1|0.37|ENSG00000167548|chr12:49040601-49040601|G/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	555.7532348632812	2	555.831517	1109.64848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.59	1	133.59	133.09	134.09	0								0	0	0	0.15451	1	51517	51517		6.2058	0	1		+		39286	26866	28843	29076	38266	38266					0.09804363550892958
PPLLPPDR	8	Unmodified	_PPLLPPDR_					0	0	0			REV__ENST00000491755.5_1_1:46087308-46087964:-|nuORF	REV__ENST00000491755.5_1_1:46087308-46087964:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	453.1516418457031	2	452.766178	903.517802	-0.22519	-0.00010196	0.18171	8.2273E-05	-0.043478	-1.9685E-05	452.7662024799963	78.226	0.25488	78.969	78.776	79.031	0.74293					6	4	2	0	0	0	0.90851	1	29692	29692		24.21	7.1234	1	545530	+		39287	20127	28844	29077	38267	38267					0.0621839262270214
PPLLVPDTSTP	11	Unmodified	_PPLLVPDTSTP_					0	0	0		ENST00000592414.1_1_19:3053234-3053555:-|nuORF	ENST00000592414.1_1_19:3053234-3053555:-|nuORF	ENST00000592414.1_1_19:3053234-3053555:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	379.9449157714844	3	379.544773	1135.61249	0.33446	0.00012694	-0.032201	-1.2222E-05	0.30226	0.00011472	379.54471936223797	61.627	0.45759	61.627	61.382	61.839	0					27	8	4	0	0	0	0.4583	1	22186	22186		21.799	2.1735	1	13542000			39288	13814	28845	29078	38268	38268					0.05010861583377846
PPLLVPDTSTP	11	Unmodified	_PPLLVPDTSTP_					0	0	0		ENST00000592414.1_1_19:3053234-3053555:-|nuORF	ENST00000592414.1_1_19:3053234-3053555:-|nuORF	ENST00000592414.1_1_19:3053234-3053555:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	379.544773	1135.61249	-0.23505	-8.9212E-05	0.20141	7.6444E-05	-0.03364	-1.2768E-05	379.5447663314637	60.694	1.012	61.439	61.16	62.172	0.74503	-0.094049	0.00010769	NaN	21.799	34	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19367000			39289	13814	28845	29078							0.05010861583377846
PPLPAHTRTGI	11	Unmodified	_PPLPAHTRTGI_					0	0	0		ENST00000263116.6_1_22:23503758-23504220:+|nuORF	ENST00000263116.6_1_22:23503758-23504220:+|nuORF	ENST00000263116.6_1_22:23503758-23504220:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	386.92431640625	3	387.224257	1158.65094	-0.59099	-0.00022885	0.10723	4.1523E-05	-0.48376	-0.00018732	387.2243450231048	25.729	0.86435	26.389	25.889	26.754	0.65992					29	16	3	0	0	0	0.94168	1	8767	8767		16.275	9.1728	1	3618700			39290	10315	28846	29079	38269	38269					0.07796212008565817
PPLRSLVHSAR	11	Unmodified	_PPLRSLVHSAR_					0	0	0			REV__FNDC1|p.P1258L|1|0.54|ENSG00000164694|chr6:159234285-159234285|C/T|missense_variant	REV__FNDC1|p.P1258L|1|0.54|ENSG00000164694|chr6:159234285-159234285|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	411.277587890625	3	411.578923	1231.71494	0.13121	5.4004E-05	-0.71415	-0.00029393	-0.58294	-0.00023992	411.57863587511747	36.106	0.61126	36.106	35.727	36.339	0					15	11	2	0	0	0	0.9889	1	11970	11970		2.2527	0	1	1547200	+		39291	26642	28847	29080	38270	38270					0.10834992165518997
PPLVLLLLLLL	11	Unmodified	_PPLVLLLLLLL_					0	0	0			REV__nc|ENSG00000142513|Q9BZG2-3|ACP4	REV__nc|ENSG00000142513|Q9BZG2-3|ACP4	MSMS	A375_MHC_IP_R1	1	608.9385986328125	2	608.935786	1215.85702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.8	1	105.8	105.3	106.3	0								0	0	0	0.1636	1	38837	38837		0	0	1		+		39292	19311	28848	29081	38271	38271					0.25772392135172595
PPNDKSVV	8	Unmodified	_PPNDKSVV_					0	0	0		ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	MSMS	A375_MHC_IP_R2	2	428.291015625	2	428.232168	854.449782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.59	1	26.25	25.75	26.75	0.65992								0	0	0	0.16876	1	8568	8568		15.847	3.3156	1				39293	7548	28849	29082	38272	38272					0.016735229720552525
PPNLPPPHRP	10	Unmodified	_PPNLPPPHRP_					0	0	0		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	MULTI-MSMS	A375_MHC_IP_R2	2	374.9294738769531	3	374.545331	1120.61416	0.28177	0.00010554	-0.64205	-0.00024048	-0.36028	-0.00013494	374.5450806812452	44.529	0.50782	45.298	45.035	45.543	0.7691					24	9	3	0	0	0	0.69306	1	16557	16557		8.4443	0	1	9353900			39294	4434	28850	29083	38273	38273					0.05867960182672505
PPPAHALP	8	Unmodified	_PPPAHALP_					0	0	0		ENST00000373142.5_1_9:130648986-130649796:-|nuORF	ENST00000373142.5_1_9:130648986-130649796:-|nuORF	ENST00000373142.5_1_9:130648986-130649796:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	400.6261291503906	2	400.226688	798.438824	-0.62013	-0.00024819	-0.45718	-0.00018297	-1.0773	-0.00043117	400.22638371900615	142.71	0.20305	142.71	142.59	142.79	0					5	3	2	0	0	0	0.972	1	54780	54780		0.79363	0	1	2828300			39295	11224	28851	29084	38274	38274					0.03154165388400543
PPPAHALP	8	Unmodified	_PPPAHALP_					0	0	0		ENST00000373142.5_1_9:130648986-130649796:-|nuORF	ENST00000373142.5_1_9:130648986-130649796:-|nuORF	ENST00000373142.5_1_9:130648986-130649796:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	400.226688	798.438824	0.1471	5.8871E-05	-1.1877	-0.00047537	-1.0407	-0.0004165	400.22612328593607	142.73	0.25461	142.76	142.64	142.89	0.030731	0.023996	-0.0003732	NaN	0.79363	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2607100			39296	11224	28851	29084							0.03154165388400543
PPPAPYSH	8	Unmodified	_PPPAPYSH_					0	0	0		ENST00000473338.1_1_2:106710484-106713932:-|nuORF	ENST00000473338.1_1_2:106710484-106713932:-|nuORF	ENST00000473338.1_1_2:106710484-106713932:-|nuORF	MSMS	A375_MHC_IP_R2	2	433.2850646972656	2	433.213778	864.413003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.287	1	43.06	42.56	43.56	0.7724								0	0	0	0.16876	1	15727	15727		11.114	0	1				39297	12387	28852	29085	38275	38275					-0.02462728853868157
PPPGGAAF	8	Unmodified	_PPPGGAAF_					0	0	0			REV__ENST00000447274.6_1_11:67056021-67056342:+|nuORF	REV__ENST00000447274.6_1_11:67056021-67056342:+|nuORF	MSMS	A375_MHC_IP_R1	1	357.2275390625	2	357.184489	712.354425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.927	1	17.927	17.427	18.427	0								0	0	0	0.16876	1	4234	4234		0	0	1		+		39298	24868	28853	29086	38276	38276					-0.013257854283438064
PPPGGAAF	8	Unmodified	_PPPGGAAF_					0	0	0			REV__ENST00000447274.6_1_11:67056021-67056342:+|nuORF	REV__ENST00000447274.6_1_11:67056021-67056342:+|nuORF	MSMS	A375_MHC_IP_R1	1	357.1883544921875	2	357.184489	712.354425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.062	1	18.062	17.562	18.562	0								0	0	0	0.16876	1	4279	4279		0	0	1		+		39299	24868	28853	29086	38277	38277					-0.013257854283438064
PPPGGAAF	8	Unmodified	_PPPGGAAF_					0	0	0			REV__ENST00000447274.6_1_11:67056021-67056342:+|nuORF	REV__ENST00000447274.6_1_11:67056021-67056342:+|nuORF	MSMS	A375_MHC_IP_R1	1	357.1888427734375	2	357.184489	712.354425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.853	1	18.853	18.353	19.353	0								0	0	0	0.16876	1	4524	4524		0	0	1		+		39300	24868	28853	29086	38278	38278					-0.013257854283438064
PPPGGARR	8	Unmodified	_PPPGGARR_					0	0	0		ENST00000497920.1_1_2:97215573-97218047:+|nuORF	ENST00000497920.1_1_2:97215573-97218047:+|nuORF	ENST00000497920.1_1_2:97215573-97218047:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	404.63189697265625	2	404.232836	806.45112	0.022975	9.2872E-06	-0.41086	-0.00016608	-0.38788	-0.00015679	404.2326279533854	123.55	1.0118	123.93	123.28	124.29	0.37661					24	19	2	0	0	0	0.7779	1	47563	47563		2.5775	0	1	12733000			39301	12752	28854	29087	38279	38279					0.04015201851461825
PPPGGGGG	8	Unmodified	_PPPGGGGG_					0	0	0		ENSG00000180828|ENST00000321870|BHLHE22	ENSG00000180828|ENST00000321870|BHLHE22	ENSG00000180828|ENST00000321870|BHLHE22	MULTI-SECPEP	A375_MHC_IP_R1	1	594.96533203125	1	595.283451	594.276175	-0.43677	-0.00026	-4.4491	-0.0026485	-4.8859	-0.0029085	595.2804231563077	89.715	0.15149	89.715	89.628	89.78	0					6	2	3	0	0	0	0.972	1	32946	32946		0	0	1	872880			39302	8319	28855	29088	38280	38280					-0.03719218013577574
PPPGGGGG	8	Unmodified	_PPPGGGGG_					0	0	0		ENSG00000180828|ENST00000321870|BHLHE22	ENSG00000180828|ENST00000321870|BHLHE22	ENSG00000180828|ENST00000321870|BHLHE22	MULTI-MATCH	A375_MHC_IP_R2	2		1	595.283451	594.276175	-0.49451	-0.00029437	-5.7641	-0.0034313	-6.2586	-0.0037256	595.2796947455603	88.724	0.25343	89.456	89.279	89.533	0.7318	-0.12953	-0.00042362	NaN	0	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1096600			39303	8319	28855	29088							-0.03719218013577574
PPPGPTVV	8	Unmodified	_PPPGPTVV_					0	0	0		ENST00000334256.8_1_3:160254621-160283312:-|nuORF;ENST00000469804.1_1_3:160282394-160283312:-|nuORF	ENST00000334256.8_1_3:160254621-160283312:-|nuORF	ENST00000334256.8_1_3:160254621-160283312:-|nuORF	MSMS	A375_MHC_IP_R1	1	382.61981201171875	2	382.221072	762.42759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.62	1	118.62	118.12	119.12	0								0	0	0	0.16876	1	43731	43731		2.5775	0	1				39304	10792	28856	29089	38281	38281					0.03687343294279799
PPPHLPTKLV	10	Unmodified	_PPPHLPTKLV_					0	0	0		ENST00000602258.1_1_19:48204415-48205669:+|nuORF;nc|ENSG00000063169|Q9NZM4-2|BICRA;ENSG00000063169|ENST00000594866|BICRA	ENST00000602258.1_1_19:48204415-48205669:+|nuORF	ENST00000602258.1_1_19:48204415-48205669:+|nuORF	MSMS	A375_MHC_IP_R2	2	366.92950439453125	3	366.893848	1097.65972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.82	1	46.585	46.085	47.085	0.76519								0	0	0	0.15438	1	17141	17141		6.6304	0.39602	1				39305	1336	28857	29090	38282	38282					0.11479185644998324
PPPHPPPPP	9	Unmodified	_PPPHPPPPP_					0	0	0		ENSG00000048991|ENST00000683871|R3HDM1;nc|ENSG00000048991|Q15032-3|R3HDM1;nc|ENSG00000048991|Q15032|R3HDM1;nc|ENSG00000048991|Q15032-4|R3HDM1;nc|ENSG00000048991|Q15032-2|R3HDM1;nc|ENSG00000175879|P13378-2|HOXD8;ENSG00000175879|ENST00000313173|HOXD8;ENST00000261716.7_1_17:27717806-27778530:+|nuORF	ENSG00000048991|ENST00000683871|R3HDM1	ENSG00000048991|ENST00000683871|R3HDM1	MULTI-SECPEP	A375_MHC_IP_R1	1	467.15289306640625	2	466.75307	931.491587	-0.52071	-0.00024304	0.57307	0.00026748	0.052362	2.444E-05	466.7531613124272	30.534	1.7198	30.534	30.049	31.769	0					46	33	2	0	0	0	0.27873	1	9768	9768		36.466	0	1	1701500			39306	1218	28858	29091	38283	38283					0.0231012345121826
PPPLFVVP	8	Unmodified	_PPPLFVVP_					0	0	0			REV__ENST00000491028.1_1_13:113745283-113749039:+|nuORF	REV__ENST00000491028.1_1_13:113745283-113749039:+|nuORF	MSMS	A375_MHC_IP_R1	1	433.2852783203125	2	433.262739	864.510926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.402	1	82.402	81.902	82.902	0								0	0	0	0.16876	1	30134	30134		2.8892	0.58649	1		+		39307	25396	28859	29092	38284	38284					0.07325079742133767
PPPPHVSI	8	Unmodified	_PPPPHVSI_					0	0	0		nc|ENSG00000124782|Q92766-5|RREB1;nc|ENSG00000124782|Q92766-3|RREB1;nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1	nc|ENSG00000124782|Q92766-5|RREB1	nc|ENSG00000124782|Q92766-5|RREB1	MULTI-SECPEP	A375_MHC_IP_R1	1	421.6169128417969	2	422.239796	842.465038	-0.3398	-0.00014348	-0.87686	-0.00037025	-1.2167	-0.00051372	422.2392446695843	41.627	0.61437	41.627	41.266	41.88	0					19	11	2	0	0	0	0.97144	1	14242	14242		5.2307	5.2307	1	2000400			39308	3927	28860	29093	38285	38285					0.03750434559901805
PPPPPNEAMP	10	Unmodified	_PPPPPNEAMP_					0	0	0			REV__nc|ENSG00000165244|Q7RTV3-2|ZNF367	REV__nc|ENSG00000165244|Q7RTV3-2|ZNF367	MSMS	A375_MHC_IP_R1	1	523.6889038085938	2	523.75241	1045.49027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.584	1	23.584	23.084	24.084	0								0	0	0	0.15207	1	6503	6503		13.906	1.3745	1		+		39309	20566	28861	29094	38286	38286					-0.03065878699840141
PPPPRSREQRR	11	Unmodified	_PPPPRSREQRR_					0	0	0		ENSG00000188070|ENST00000433688|ZFTA	ENSG00000188070|ENST00000433688|ZFTA	ENSG00000188070|ENST00000433688|ZFTA	MULTI-MSMS	A375_MHC_IP_R2	2	688.7865600585938	2	688.386908	1374.75926	-0.65512	-0.00045098	-0.77194	-0.00053139	-1.4271	-0.00098237	688.3862636257763	131.33	1.1195	131.52	130.88	132	0.18953					41	21	2	0	0	0	0.73494	1	51704	51704		4.1895	0	1	26701000			39310	8881	28862	29095	38287	38287					0.08687396311688644
PPPPVRRKLAL	11	Unmodified	_PPPPVRRKLAL_					0	0	0		ENSG00000125430|ENST00000360954|HS3ST3B1	ENSG00000125430|ENST00000360954|HS3ST3B1	ENSG00000125430|ENST00000360954|HS3ST3B1	MULTI-SECPEP	A375_MHC_IP_R2	2	622.0288696289062	2	622.403507	1242.79246	-0.53066	-0.00033028	-0.85841	-0.00053428	-1.3891	-0.00086456	622.4021492877697	112.38	0.35461	113.1	112.92	113.27	0.72459					8	6	2	0	0	0	0.99606	1	42394	42394		3.2813	1.6287	1	1949500			39311	3960	28863	29096	38288	38288					0.1807763010169765
PPPPVTSWFPA	11	Unmodified	_PPPPVTSWFPA_					0	0	0			REV__nc|ENSG00000148840|Q5VV67-2|PPRC1	REV__nc|ENSG00000148840|Q5VV67-2|PPRC1	MULTI-MSMS	A375_MHC_IP_R1	1	399.5860595703125	3	399.209725	1194.60735	-0.16372	-6.536E-05	-0.85226	-0.00034023	-1.016	-0.00040559	399.20836325017285	57.042	0.45864	57.042	56.804	57.263	0					20	8	4	0	0	0	0.73228	1	20465	20465		3.0723	1.1659	1	1529300	+		39312	19649	28864	29097	38289	38289					0.017826025114118238
PPPPVTSWFPA	11	Unmodified	_PPPPVTSWFPA_					0	0	0			REV__nc|ENSG00000148840|Q5VV67-2|PPRC1	REV__nc|ENSG00000148840|Q5VV67-2|PPRC1	MULTI-MSMS	A375_MHC_IP_R2	2	399.6080017089844	3	399.209725	1194.60735	-0.30319	-0.00012104	-0.89088	-0.00035565	-1.1941	-0.00047668	399.20819397943626	56.173	0.51038	56.923	56.642	57.152	0.75015					22	9	4	0	0	0	0.73228	1	21245	21245		3.0723	1.1659	1	3479200	+		39313	19649	28864	29097	38290	38290					0.017826025114118238
PPPPVTSWFPA	11	Unmodified	_PPPPVTSWFPA_					0	0	0			REV__nc|ENSG00000148840|Q5VV67-2|PPRC1	REV__nc|ENSG00000148840|Q5VV67-2|PPRC1	MULTI-SECPEP	A375_MHC_IP_R2	2	399.5862731933594	3	399.209725	1194.60735	-0.30319	-0.00012104	-0.89088	-0.00035565	-1.1941	-0.00047668	399.20819397943626	56.173	0.51038	56.923	56.642	57.152	0.75015					22	9	4	0	0	0	0.99526	1	21285	21285		3.0723	2.8032	1	3479200	+		39314	19649	28864	29097	38291	38291					0.017826025114118238
PPPPVTSWFPA	11	Unmodified	_PPPPVTSWFPA_					0	0	0			REV__nc|ENSG00000148840|Q5VV67-2|PPRC1	REV__nc|ENSG00000148840|Q5VV67-2|PPRC1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	399.209725	1194.60735	-0.16372	-6.536E-05	-0.85226	-0.00034023	-1.016	-0.00040559	399.20836325017285	57.042	0.45864	57.042	56.804	57.263	0	0.059734	2.0855E-05	NaN	3.0723	20	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1529300	+		39315	19649	28864	29097							0.017826025114118238
PPPQPPPPP	9	Unmodified	_PPPQPPPPP_					0	0	0		ENSG00000203867|ENST00000369519|RBM20;ENSG00000183654|ENST00000332432|MARCHF11;ENSG00000181240|ENST00000321510|SLC25A41;ENSG00000196814|ENST00000361171|MVB12B	REV__ENSG00000131061|ENST00000375200|ZNF341;ENSG00000203867|ENST00000369519|RBM20;ENSG00000183654|ENST00000332432|MARCHF11;ENSG00000181240|ENST00000321510|SLC25A41;ENSG00000196814|ENST00000361171|MVB12B;REV__ENSG00000145808|ENST00000274487|ADAMTS19;REV__ENSG00000203867|ENST00000369519|RBM20	REV__ENSG00000131061|ENST00000375200|ZNF341	MULTI-SECPEP	A375_MHC_IP_R1	1	462.6452331542969	2	462.252903	922.491253	-0.25564	-0.00011817	-0.58253	-0.00026928	-0.83817	-0.00038744	462.2526379397383	36.22	0.91562	36.22	35.625	36.541	0					44	17	3	0	0	0	0.28418	1	12192	12192		30.225	5.5509	1	3763400			39316	18585;8514;9399;8340;9086;19493;22473	28865	29098	38292	38292					0.02690703731366284
PPPTHREK	8	Unmodified	_PPPTHREK_					0	0	0		nc|ENSG00000112038|P35372-5|OPRM1	nc|ENSG00000112038|P35372-5|OPRM1	nc|ENSG00000112038|P35372-5|OPRM1	MULTI-MSMS	A375_MHC_IP_R1	1	481.6631774902344	2	481.264333	960.514114	-0.33899	-0.00016315	-2.5441	-0.0012244	-2.8831	-0.0013875	481.26314495812977	128.65	0.45663	128.65	128.43	128.89	0					17	8	3	0	0	0	0.7754	1	49413	49413		11.64	1.5664	1	16752000			39317	14547	28866	29099	38293	38293					0.032277228488510445
PPQGLVIKEP	10	Unmodified	_PPQGLVIKEP_					0	0	0			REV__nc|ENSG00000063169|Q9NZM4-2|BICRA	REV__nc|ENSG00000063169|Q9NZM4-2|BICRA	MSMS	A375_MHC_IP_R2	2	359.88275146484375	3	359.881608	1076.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.59	1	44.362	43.862	44.862	0.77209								0	0	0	0.15451	1	16245	16245		3.3196	0	1		+		39318	16464	28867	29100	38294	38294					0.08774889028472899
PPQPDPVFL	9	Unmodified	_PPQPDPVFL_					0	0	0		ENSG00000167565|ENST00000322354|SERTAD3	ENSG00000167565|ENST00000322354|SERTAD3	ENSG00000167565|ENST00000322354|SERTAD3	MSMS	A375_MHC_IP_R1	1	505.39337158203125	2	505.271293	1008.52803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.275	1	88.275	87.775	88.775	0								0	0	0	0.14767	1	32403	32403		25.399	0.72543	1				39319	7196	28868	29101	38295	38295					0.02410955557274974
PPQPPSTAQ	9	Unmodified	_PPQPPSTAQ_					0	0	0			REV__AluJb_dup56968|chr8:98045693-98046014:+|1.3913425786900295|0.0002169198745066|12.65|472.0|23|3|anti-sense	REV__AluJb_dup56968|chr8:98045693-98046014:+|1.3913425786900295|0.0002169198745066|12.65|472.0|23|3|anti-sense	MULTI-MSMS	A375_MHC_IP_R2	2	462.6524658203125	2	461.735074	921.455596	-0.64986	-0.00030006	0.24072	0.00011115	-0.40914	-0.00018891	461.73517063297527	35.845	0.56073	36.608	36.333	36.894	0.76338					25	10	3	0	0	0	0.35581	1	13069	13069		26.884	1.4843	1	26631000	+		39320	15361	28869	29102	38296	38296					-0.008273785162828062
PPQQPGLRAP	10	Unmodified	_PPQQPGLRAP_					0	0	0			REV__OBSCN|p.R4794Afs*50|1|0.26|ENSG00000154358|chr1:228319130-228319130|C/-|frameshift_variant	REV__OBSCN|p.R4794Afs*50|1|0.26|ENSG00000154358|chr1:228319130-228319130|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	354.6134033203125	3	354.201452	1059.58253	-0.39344	-0.00013936	0.18475	6.5437E-05	-0.2087	-7.392E-05	354.2015167485433	37.836	0.56441	38.611	38.382	38.946	0.77451					20	10	3	0	0	0	0.5761	1	13993	13993		22.658	0.85862	1	10163000	+		39321	27637	28870	29103	38297	38297					0.055119674287197995
PPRGQPKMDWK	11	Unmodified	_PPRGQPKMDWK_					0	0	0		nc|ENSG00000119977|Q6NUS6-3|TCTN3;nc|ENSG00000119977|Q6NUS6-5|TCTN3;ENSG00000119977|ENST00000371217|TCTN3	nc|ENSG00000119977|Q6NUS6-3|TCTN3	nc|ENSG00000119977|Q6NUS6-3|TCTN3	MULTI-SECPEP	A375_MHC_IP_R1	1	446.6375732421875	3	447.236168	1338.68668	-0.087418	-3.9096E-05	-3.5428	-0.0015845	-3.6302	-0.0016236	447.2341456206445	74.606	0.25378	74.606	74.4	74.653	0					6	4	2	0	0	0	1.0002	1	27123	27123		2.8433	0.21205	1	463310			39322	3643	28871	29104	38298	38298					0.030879261938935088
PPRMYVFICPI	11	Unmodified	_PPRMYVFICPI_					0	0	0			REV__ENSG00000258817|ENST00000555099|OR4C13	REV__ENSG00000258817|ENST00000555099|OR4C13	MSMS	A375_MHC_IP_R2	2	445.653076171875	3	445.90325	1334.68792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.243	1	47.008	46.508	47.508	0.76519								0	0	0	0.16305	1	17313	17313		2.8433	1.101	1		+		39323	22898	28872	29105	38299	38299					0.033964242384854515
PPRTRQRSGPG	11	Unmodified	_PPRTRQRSGPG_					0	0	0			REV__ENST00000528852.5_1_11:66045701-66045848:+|nuORF	REV__ENST00000528852.5_1_11:66045701-66045848:+|nuORF	MSMS	A375_MHC_IP_R2	2	604.8084106445312	2	604.833977	1207.6534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.05	1	52.802	52.302	53.302	0.75225								0	0	0	0.15488	1	19607	19607		17.443	7.3687	1		+		39324	25811	28873	29106	38300	38300					0.057880604662159385
PPRVTRQVF	9	Unmodified	_PPRVTRQVF_					0	0	0			REV__ENST00000434748.2_2_12:133160750-133160867:+|nuORF	REV__ENST00000434748.2_2_12:133160750-133160867:+|nuORF	MSMS	A375_MHC_IP_R1	1	367.2696533203125	3	367.217214	1098.62981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.335	1	27.335	26.835	27.835	0								0	0	0	0.15486	1	8276	8276		6.1918	0	1		+		39325	24741	28874	29107	38301	38301					0.08444246699696123
PPSFPPGRRI	10	Unmodified	_PPSFPPGRRI_					0	0	0			REV__CTAGE1|p.P689S|1|0.17|ENSG00000212710|chr18:22415747-22415747|G/A|missense_variant	REV__CTAGE1|p.P689S|1|0.17|ENSG00000212710|chr18:22415747-22415747|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	375.60015869140625	3	375.217214	1122.62981	0.36457	0.00013679	-0.033696	-1.2643E-05	0.33088	0.00012415	375.5515273921697	28.493	0.50637	28.493	28.188	28.694	0					16	9	2	0	0	0	0.71245	1	8709	8709		3.5871	0	1	1552900	+		39326	15930	28875	29108	38302	38302					0.07340246699709496
PPSPGTAAW	9	Unmodified	_PPSPGTAAW_					0	0	0		ENST00000402886.7_1_6:35444208-35454475:-|nuORF	ENST00000402886.7_1_6:35444208-35454475:-|nuORF	ENST00000402886.7_1_6:35444208-35454475:-|nuORF	MSMS	A375_MHC_IP_R2	2	442.139404296875	2	442.21906	882.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.118	1	35.881	35.381	36.381	0.76338								0	0	0	0.1521	1	12714	12714		18.135	1.1927	1				39327	11568	28876	29109	38303	38303					-0.022347461994399964
PPSSPTEH	8	Unmodified	_PPSSPTEH_					0	0	0			REV__ENST00000046640.7_1_17:3540070-3540534:+|nuORF	REV__ENST00000046640.7_1_17:3540070-3540534:+|nuORF	MSMS	A375_MHC_IP_R1	1	426.1368408203125	2	426.198325	850.382096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.484	1	43.484	42.984	43.984	0								0	0	0	0.16876	1	15116	15116		19.439	2.4967	1		+		39328	23006	28877	29110	38304	38304					-0.049079269587537055
PPSWQDMKI	9	Unmodified	_PPSWQDMKI_					0	0	0		nc|ENSG00000146416|Q9NVV5-1|AIG1	nc|ENSG00000146416|Q9NVV5-1|AIG1	nc|ENSG00000146416|Q9NVV5-1|AIG1	MULTI-SECPEP	A375_MHC_IP_R1	1	367.5928649902344	3	367.851432	1100.53247	0.030984	1.1397E-05	0.22318	8.2095E-05	0.25416	9.3493E-05	367.851447807814	30.888	0.45598	30.888	30.653	31.109	0					10	8	2	0	0	0	0.77834	1	9931	9931		2.7352	0	1	690370			39329	14667	28878	29111	38305	38305					-0.013779032914726486
PPTALARSA	9	Unmodified	_PPTALARSA_					0	0	0			REV__ENSG00000120913|ENST00000409417|PDLIM2	REV__ENSG00000120913|ENST00000409417|PDLIM2	MULTI-MSMS	A375_MHC_IP_R1	1	442.6532287597656	2	442.253434	882.492316	-0.46119	-0.00020396	0.042887	1.8967E-05	-0.4183	-0.000185	442.25342136303277	41.44	1.1187	41.44	40.963	42.082	0					55	21	4	0	0	0	0.10411	1	14236	14236		49.933	0	1	63481000	+		39330	18142	28879	29112	38306	38306					0.046369181002773985
PPTHLTMQF	9	Unmodified	_PPTHLTMQF_					0	0	0		ENST00000258796.11_1_7:2703873-2703963:+|nuORF	ENST00000258796.11_1_7:2703873-2703963:+|nuORF	ENST00000258796.11_1_7:2703873-2703963:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	536.166015625	2	536.268227	1070.5219	-0.8518	-0.00045679	0.38136	0.00020451	-0.47044	-0.00025228	536.2683595856261	32.988	0.65896	32.988	32.734	33.393	0					29	12	3	0	0	0	0.73008	1	10682	10682		17.113	2.2746	1	13838000			39331	10258	28880	29113	38307	38307					-0.010538859458847583
PPTKKPRKL	9	Unmodified	_PPTKKPRKL_					0	0	0		ENST00000527247.5_1_11:126099171-126110978:+|nuORF;ENSG00000197798|ENST00000533050|FAM118B	ENST00000527247.5_1_11:126099171-126110978:+|nuORF	ENST00000527247.5_1_11:126099171-126110978:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	355.5794982910156	3	355.569476	1063.6866	-0.58289	-0.00020726	0.69409	0.0002468	0.1112	3.954E-05	355.9041507353028	24.645	0.2019	25.289	25.212	25.414	0.64368					5	3	2	0	0	0	0.69317	1	8130	8130		7.609	0	1	958190			39332	9196	28881	29114	38308	38308					0.15730294256240995
PPVAEPVPV	9	Unmodified	_PPVAEPVPV_					0	0	0		ENSG00000171853|ENST00000324266|TRAPPC12;ENST00000482645.1_1_2:3383573-3392513:+|nuORF	ENSG00000171853|ENST00000324266|TRAPPC12	ENSG00000171853|ENST00000324266|TRAPPC12	MULTI-SECPEP	A375_MHC_IP_R2	2	453.1219482421875	2	452.760561	903.506569	-0.33633	-0.00015228	-0.61317	-0.00027762	-0.9495	-0.0004299	452.7602213791606	80.954	0.51346	81.699	81.365	81.879	0.74474					13	9	2	0	0	0	0.60012	1	30711	30711		12.532	0	1	1118700			39333	7650	28882	29115	38309	38309					0.0509557052856735
PPVAEPVPV	9	Unmodified	_PPVAEPVPV_					0	0	0		ENSG00000171853|ENST00000324266|TRAPPC12;ENST00000482645.1_1_2:3383573-3392513:+|nuORF	ENSG00000171853|ENST00000324266|TRAPPC12	ENSG00000171853|ENST00000324266|TRAPPC12	MULTI-MATCH	A375_MHC_IP_R1	1		2	452.760561	903.506569	-0.10985	-4.9737E-05	0.055744	2.5239E-05	-0.054108	-2.4498E-05	452.76059097036665	81.885	0.50654	81.885	81.607	82.113	0	0.092935	0.00039815	NaN	12.532	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1544100			39334	7650	28882	29115							0.0509557052856735
PPVHIDKIE	9	Unmodified	_PPVHIDKIE_					0	0	0			REV__ENSG00000165283|ENST00000356493|STOML2	REV__ENSG00000165283|ENST00000356493|STOML2	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6951904296875	2	524.295299	1046.57605	-0.59795	-0.0003135	0.13251	6.9474E-05	-0.46544	-0.00024403	524.2955547361391	24.622	0.20013	24.622	24.447	24.647	0					7	3	3	0	0	0	0.28475	1	7044	7044		25.399	0	1	8819200	+		39335	20570	28883	29116	38310	38310					0.054620294773030764
PPVLASQSVG	10	Unmodified	_PPVLASQSVG_					0	0	0		chr19:35407334-35407440|170|16.68|0.08|7.66|+|2|TE_info:AluJr4,AluJr4_dup18786,Alu,SINE,donor,-,35407041,35407334|None,LINC01531|3	chr19:35407334-35407440|170|16.68|0.08|7.66|+|2|TE_info:AluJr4,AluJr4_dup18786,Alu,SINE,donor,-,35407041,35407334|None,LINC01531|3	chr19:35407334-35407440|170|16.68|0.08|7.66|+|2|TE_info:AluJr4,AluJr4_dup18786,Alu,SINE,donor,-,35407041,35407334|None,LINC01531|3	MULTI-SECPEP	A375_MHC_IP_R1	1	478.16595458984375	2	477.766374	953.518196	-0.24485	-0.00011698	-0.20892	-9.9816E-05	-0.45377	-0.0002168	477.7662125602614	109.06	0.96329	109.06	108.56	109.52	0					38	18	3	0	0	0	0.92051	1	40002	40002		7.9102	2.6795	1	2329400			39336	454	28884	29117	38311	38311					0.03957767551912639
PPVMGLHP	8	Unmodified	_PPVMGLHP_					0	0	0			REV__nc|ENSG00000126259|Q6UWL6-5|KIRREL2	REV__nc|ENSG00000126259|Q6UWL6-5|KIRREL2	MSMS	A375_MHC_IP_R1	1	424.6289978027344	2	424.228374	846.442194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.01	1	102.01	101.51	102.51	0								0	0	0	0.16876	1	37486	37486		2.8892	0.31174	1		+		39337	18384	28885	29118	38312	38312					0.012830921707745802
PPVQGSGPPSL	11	Unmodified	_PPVQGSGPPSL_					0	0	0		ENST00000261381.6_1_16:17201656-17201776:-|nuORF	ENST00000261381.6_1_16:17201656-17201776:-|nuORF	ENST00000261381.6_1_16:17201656-17201776:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	518.197021484375	2	518.277106	1034.53966	-0.75532	-0.00039147	0.8324	0.00043142	0.077081	3.9949E-05	518.2772010732441	80.562	0.56058	81.307	81.011	81.572	0.74474					16	10	3	0	0	0	0.78118	1	30641	30641		26.268	0	1	2776000			39338	10279	28886	29119	38313	38313					0.023771525806068894
PPVRASRS	8	Unmodified	_PPVRASRS_					0	0	0			REV__nc|ENSG00000115266|O95996-2|APC2	REV__nc|ENSG00000115266|O95996-2|APC2	MULTI-MSMS	A375_MHC_IP_R2	2	435.6511535644531	2	435.251226	868.487899	-0.23922	-0.00010412	0.039225	1.7073E-05	-0.19999	-8.7047E-05	435.2511563360184	104.48	6.2587	105.24	102.77	109.03	0.76308					258	122	3	0	0	0	0.77717	1	39582	39582		5.2307	0.90143	1	16931000	+		39339	17868	28887	29120	38314	38314					0.04839453677379879
PPVRELSYDDL	11	Unmodified	_PPVRELSYDDL_					0	0	0			REV__nc|ENSG00000141837|O00555-5|CACNA1A	REV__nc|ENSG00000141837|O00555-5|CACNA1A	MULTI-SECPEP	A375_MHC_IP_R1	1	435.2669677734375	3	435.22247	1302.64558	0.014765	6.4259E-06	-0.0073496	-3.1987E-06	0.007415	3.2272E-06	435.22266891649343	43.275	0.35713	43.275	43.043	43.4	0					9	6	2	0	0	0	0.99018	1	15011	15011		3.8459	0	1	804850	+		39340	19286	28888	29121	38315	38315					0.006364436354488134
PPVSLIVQLV	10	Unmodified	_PPVSLIVQLV_					0	0	0			REV__ENST00000476739.5_1_5:141007605-141008788:-|nuORF	REV__ENST00000476739.5_1_5:141007605-141008788:-|nuORF	MSMS	A375_MHC_IP_R1	1	355.5794677734375	3	355.561987	1063.66413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.215	1	35.215	34.715	35.715	0								0	0	0	0.15583	1	11693	11693		1.9064	0.42447	1		+		39341	25187	28889	29122	38316	38316					0.13484650067948678
PPYFIWEREMF	11	Unmodified	_PPYFIWEREMF_					0	0	0		ENST00000360338.3_1_19:57804034-57804283:+|nuORF	ENST00000360338.3_1_19:57804034-57804283:+|nuORF	ENST00000360338.3_1_19:57804034-57804283:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	505.975830078125	3	505.576079	1513.70641	-0.41203	-0.00020831	-0.3033	-0.00015334	-0.71533	-0.00036165	505.5759403530273	31.338	0.30467	31.338	31.16	31.465	0					11	5	3	0	0	0	1.0014	1	10059	10059		0.094841	0	1	5106500			39342	11026	28890	29123	38317	38317					-0.02989742586032662
PPYIVWYIV	9	Unmodified	_PPYIVWYIV_					0	0	0		nc|ENSG00000137054|Q9GZS1-1|POLR1E	nc|ENSG00000137054|Q9GZS1-1|POLR1E	nc|ENSG00000137054|Q9GZS1-1|POLR1E	MULTI-SECPEP	A375_MHC_IP_R2	2	574.6504516601562	2	575.320786	1148.62702	-0.096844	-5.5717E-05	-0.18993	-0.00010927	-0.28678	-0.00016499	575.3213870847719	84.46	0.30273	85.196	85.069	85.372	0.73601					6	5	2	0	0	0	0.64653	1	32090	32090		14.582	10.392	1	1089100			39343	14624	28891	29124	38318	38318					0.058649785221632555
PQAFEFVGEF	10	Unmodified	_PQAFEFVGEF_					0	0	0		nc|ENSG00000147257|P51654-2|GPC3;ENSG00000147257|ENST00000370818|GPC3;nc|ENSG00000147257|P51654-3|GPC3	nc|ENSG00000147257|P51654-2|GPC3	nc|ENSG00000147257|P51654-2|GPC3	MSMS	A375_MHC_IP_R1	1	585.700927734375	2	585.776939	1169.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.439	1	46.439	45.939	46.939	0								0	0	0	0.14673	1	16294	16294		24.021	3.5669	1				39344	5674	28892	29125	38319	38319					-0.038662671392330594
PQAIAAAPV	9	Unmodified	_PQAIAAAPV_					0	0	0			REV__ENST00000378799.10_1_16:71929242-71949560:+|nuORF	REV__ENST00000378799.10_1_16:71929242-71949560:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	419.6452941894531	2	419.245078	836.475603	-0.089841	-3.7666E-05	0.828	0.00034714	0.73816	0.00030947	419.2454587182602	67.329	0.45544	68.066	67.75	68.205	0.73631					12	8	2	0	0	0	0.75466	1	25548	25548		4.3292	0	1	1017900	+		39345	24187	28893	29126	38320	38320					0.050824172143165924
PQAKMSQLSM	10	Unmodified	_PQAKMSQLSM_					0	0	0			REV__nc|ENSG00000158691|O43309-2|ZSCAN12	REV__nc|ENSG00000158691|O43309-2|ZSCAN12	MSMS	A375_MHC_IP_R2	2	560.6935424804688	2	560.778102	1119.54165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.56	1	110.31	109.81	110.81	0.74684								0	0	0	0.15353	1	41345	41345		9.3831	0.035688	1		+		39346	20087	28894	29127	38321	38321					-0.01333877997444688
PQARALCG	8	Unmodified	_PQARALCG_					0	0	0		ENST00000590558.5_1_19:5692045-5712033:-|nuORF;nc|ENSG00000196365|P36776-3|LONP1;nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5692045-5696439:-|nuORF	ENST00000590558.5_1_19:5692045-5712033:-|nuORF	ENST00000590558.5_1_19:5692045-5712033:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	815.953857421875	1	815.419233	814.411957	-0.39463	-0.00032179	3.2648	0.0026622	2.8702	0.0023404	815.42189932221	125.43	1.2562	125.43	124.6	125.85	0					31	24	2	0	0	0	0.972	1	47813	47813		10.183	0.83596	1	2988199999.9999995			39347	9030	28895	29128	38322	38322					-0.002672664944157077
PQDCSGVINPF	11	Unmodified	_PQDCSGVINPF_					0	0	0			REV__ENST00000527691.5_1_1:156567604-156567955:-|nuORF	REV__ENST00000527691.5_1_1:156567604-156567955:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	589.67333984375	2	588.771331	1175.52811	-0.64216	-0.00037809	-0.707	-0.00041626	-1.3492	-0.00079435	589.2736447199939	106.94	0.91473	107.7	107.5	108.41	0.75977					36	17	3	0	0	0	0.69231	1	40428	40428		16.149	5.3252	1	3544900	+		39348	25155	28896	29129	38323	38323					-0.05263412505019005
PQDIYNQLKIE	11	Unmodified	_PQDIYNQLKIE_					0	0	0		ENSG00000176771|ENST00000409261|NCKAP5	ENSG00000176771|ENST00000409261|NCKAP5	ENSG00000176771|ENST00000409261|NCKAP5	MSMS	A375_MHC_IP_R1	1	680.6881713867188	2	680.858992	1359.70343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.81	1	105.81	105.31	106.31	0								0	0	0	0.16164	1	38841	38841		10.151	3.0488	1				39349	8033	28897	29130	38324	38324					0.037967055608532974
PQDSPKLEFE	10	Unmodified	_PQDSPKLEFE_					0	0	0		ENST00000342494.7_1_12:109915806-109915905:+|nuORF	ENST00000342494.7_1_12:109915806-109915905:+|nuORF	ENST00000342494.7_1_12:109915806-109915905:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	397.60357666015625	3	397.196033	1188.56627	-0.21783	-8.6522E-05	0.70454	0.00027984	0.48671	0.00019332	397.1955777005247	24.673	0.20015	24.673	24.498	24.698	0					5	3	2	0	0	0	0.92295	1	7010	7010		8.2864	0	1	1100600			39350	10877	28898	29131	38325	38325					-0.020472033187161287
PQDSSNKK	8	Unmodified	_PQDSSNKK_					0	0	0		nc|ENSG00000105204|Q9Y463-2|DYRK1B;nc|ENSG00000105204|Q9Y463-3|DYRK1B;ENSG00000105204|ENST00000323039|DYRK1B	nc|ENSG00000105204|Q9Y463-2|DYRK1B	nc|ENSG00000105204|Q9Y463-2|DYRK1B	MULTI-SECPEP	A375_MHC_IP_R1	1	902.7361450195312	1	903.453036	902.445759	-0.71248	-0.0006437	-0.93314	-0.00084305	-1.6456	-0.0014867	903.4526517724777	122.78	2.4207	122.78	122.18	124.6	0					81	47	2	0	0	0	0.972	1	46650	46650		3.9444	0	1	2574200000			39351	2575	28899	29132	38326	38326					-0.009365665216591879
PQDSSNKK	8	Unmodified	_PQDSSNKK_					0	0	0		nc|ENSG00000105204|Q9Y463-2|DYRK1B;nc|ENSG00000105204|Q9Y463-3|DYRK1B;ENSG00000105204|ENST00000323039|DYRK1B	nc|ENSG00000105204|Q9Y463-2|DYRK1B	nc|ENSG00000105204|Q9Y463-2|DYRK1B	MULTI-MATCH	A375_MHC_IP_R2	2		1	903.453036	902.445759	-0.41648	-0.00037627	-1.4539	-0.0013135	-1.8704	-0.0016898	903.4522242300742	122.44	2.3803	122.82	122.16	124.54	0.3766	0.020125	-0.00025179	NaN	3.9444	82	46	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1740199999.9999998			39352	2575	28899	29132							-0.009365665216591879
PQEQQWTEV	9	Unmodified	_PQEQQWTEV_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MULTI-SECPEP	A375_MHC_IP_R2	2	382.5802917480469	3	382.180494	1143.51965	-0.43176	-0.00016501	0.43053	0.00016454	-0.0012259	-4.6852E-07	382.1805480722841	22.967	0.46026	23.597	23.265	23.726	0.63014					12	8	2	0	0	0	0.77396	1	7344	7344		3.8763	3.8763	1	4885200	+		39353	16641	28900	29133	38327	38327					-0.04636643150024611
PQEVRRPLLN	10	Unmodified	_PQEVRRPLLN_					0	0	0			REV__TLK2|p.P119L|1|0.59|ENSG00000146872|chr17:62524324-62524324|C/T|missense_variant	REV__TLK2|p.P119L|1|0.59|ENSG00000146872|chr17:62524324-62524324|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	610.5835571289062	2	611.356754	1220.69895	-0.31665	-0.00019359	-0.18795	-0.00011491	-0.5046	-0.00030849	611.3566719801712	137.69	1.8752	137.77	137.3	139.18	0.083969					50	36	2	0	0	0	0.94598	1	53866	53866		3.2813	0.28607	1	909970	+		39354	28117	28901	29134	38328	38328					0.09743285928607293
PQFHVKSGLQ	10	Unmodified	_PQFHVKSGLQ_					0	0	0		nc|ENSG00000162889|P49137-2|MAPKAPK2;ENSG00000162889|ENST00000367103|MAPKAPK2	nc|ENSG00000162889|P49137-2|MAPKAPK2	nc|ENSG00000162889|P49137-2|MAPKAPK2	MULTI-SECPEP	A375_MHC_IP_R2	2	381.5888366699219	3	380.876857	1139.60874	-0.82157	-0.00031292	-0.50448	-0.00019214	-1.3261	-0.00050506	380.87657606078994	29.319	0.4551	30.018	29.88	30.335	0.69872					13	8	3	0	0	0	0.78945	1	10302	10302		8.4443	0	1	4101000			39355	6608	28902	29135	38329	38329					0.04452236600195647
PQFSDIHYY	9	Unmodified	_PQFSDIHYY_					0	0	0			REV__MPZL2|p.P83S|1|0.25|ENSG00000149573|chr11:118262627-118262627|G/A|missense_variant	REV__MPZL2|p.P83S|1|0.25|ENSG00000149573|chr11:118262627-118262627|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	584.72900390625	2	585.266739	1168.51892	-0.59288	-0.00034699	-1.0189	-0.00059633	-1.6118	-0.00094332	585.2663204915198	72.61	0.96468	73.345	72.922	73.887	0.7354					33	18	2	0	0	0	0.76827	1	27441	27441		10.824	0.75	1	1434300	+		39356	27033	28903	29136	38330	38330					-0.05859437799040279
PQGDITIIY	9	Unmodified	_PQGDITIIY_					0	0	0			REV__ADAM18|p.S528Tfs*2|1|0.02|ENSG00000168619|chr8:39677466-39677467|-/TTAATTCTCTGCATGAAAGAAC|frameshift_variant	REV__ADAM18|p.S528Tfs*2|1|0.02|ENSG00000168619|chr8:39677466-39677467|-/TTAATTCTCTGCATGAAAGAAC|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	510.6744384765625	2	510.274032	1018.53351	-0.68848	-0.00035131	-0.22992	-0.00011732	-0.91839	-0.00046863	510.27395523699056	104.72	3.8699	105.49	105.05	108.92	0.76308					241	75	6	0	0	0	0.2002	1	40535	40535		37.974	0	1	973940000	+		39357	15311	28904	29137	38331	38331					0.024986343491036678
PQHPCSCWTC	10	Unmodified	_PQHPCSCWTC_					0	0	0			REV__nc|ENSG00000140931|Q96MX0-2|CMTM3	REV__nc|ENSG00000140931|Q96MX0-2|CMTM3	MSMS	A375_MHC_IP_R1	1	581.1649169921875	2	581.217354	1160.42016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.15	1	108.15	107.65	108.65	0								0	0	0	0.15451	1	39677	39677		6.2058	0.97511	1		+		39358	24620	28905	29138	38332	38332					-0.15363823631605555
PQHVYGNVTF	10	Unmodified	_PQHVYGNVTF_					0	0	0		ENSG00000167619|ENST00000301204|TMEM145	ENSG00000167619|ENST00000301204|TMEM145	ENSG00000167619|ENST00000301204|TMEM145	MULTI-SECPEP	A375_MHC_IP_R1	1	387.9681701660156	3	387.861096	1160.56146	0.23763	9.2169E-05	0.82651	0.00032057	1.0641	0.00041274	388.1959394551649	33.47	0.20408	33.47	33.393	33.597	0					5	3	2	0	0	0	0.94421	1	10959	10959		0.13989	0	1	749110			39359	7200	28906	29139	38333	38333					-0.012400426708154555
PQIHRIRNK	9	Unmodified	_PQIHRIRNK_					0	0	0			REV__ENSG00000168140|ENST00000304735|VASN	REV__ENSG00000168140|ENST00000304735|VASN	MULTI-MSMS	A375_MHC_IP_R2	2	1162.096435546875	1	1161.69633	1160.68906	0.34679	0.00040287	-0.21065	-0.00024471	0.13615	0.00015816	1161.695716962696	149.51	1.4978	149.53	148.44	149.93	0.01825					114	51	3	0	0	0	0.7724	1	57973	57973		0.52476	0.12405	1	335800	+		39360	20831	28907	29140	38334	38334					0.11514142713872388
PQIILVFFQIN	11	Unmodified	_PQIILVFFQIN_					0	0	0			REV__ENST00000443361.1_1_9:108285096-108287232:+|nuORF	REV__ENST00000443361.1_1_9:108285096-108287232:+|nuORF	MSMS	A375_MHC_IP_R1	1	666.2222900390625	2	666.389731	1330.76491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.13	1	103.13	102.63	103.63	0								0	0	0	0.16302	1	37895	37895		2.9952	0	1		+		39361	24826	28908	29141	38335	38335					0.11275682050813884
PQIISEGLY	9	Unmodified	_PQIISEGLY_					0	0	0		nc|ENSG00000069018|Q9HCX4-2|TRPC7;nc|ENSG00000069018|Q9HCX4-3|TRPC7;nc|ENSG00000137672|Q9Y210-2|TRPC6;nc|ENSG00000138741|Q13507-3|TRPC3;ENSG00000069018|ENST00000513104|TRPC7;nc|ENSG00000137672|Q9Y210-3|TRPC6;ENSG00000138741|ENST00000379645|TRPC3;ENSG00000137672|ENST00000344327|TRPC6	nc|ENSG00000069018|Q9HCX4-2|TRPC7	nc|ENSG00000069018|Q9HCX4-2|TRPC7	MULTI-MSMS	A375_MHC_IP_R1	1	1019.7733154296875	1	1019.54079	1018.53351	0.30244	0.00030835	-0.64536	-0.00065797	-0.34292	-0.00034962	1019.5401782212026	105.53	5.393	105.53	104.74	110.14	0					282	105	6	0	0	0	0.41409	1	38509	38509		24.021	2.4836	1	4663000000			39362	1471	28909	29142	38336	38336					0.024986343491036678
PQIISEGLY	9	Unmodified	_PQIISEGLY_					0	0	0		nc|ENSG00000069018|Q9HCX4-2|TRPC7;nc|ENSG00000069018|Q9HCX4-3|TRPC7;nc|ENSG00000137672|Q9Y210-2|TRPC6;nc|ENSG00000138741|Q13507-3|TRPC3;ENSG00000069018|ENST00000513104|TRPC7;nc|ENSG00000137672|Q9Y210-3|TRPC6;ENSG00000138741|ENST00000379645|TRPC3;ENSG00000137672|ENST00000344327|TRPC6	nc|ENSG00000069018|Q9HCX4-2|TRPC7	nc|ENSG00000069018|Q9HCX4-2|TRPC7	MULTI-MSMS	A375_MHC_IP_R2	2	511.2441711425781	2	510.274032	1018.53351	-0.68848	-0.00035131	-0.22992	-0.00011732	-0.91839	-0.00046863	510.27395523699056	104.72	3.8699	105.49	105.05	108.92	0.76308					241	75	6	0	0	0	0.38603	1	40315	40315		25.399	1.3787	1	973940000			39363	1471	28909	29142	38337	38337					0.024986343491036678
PQIRSNYKYHW	11	Unmodified	_PQIRSNYKYHW_					0	0	0			REV__ENSG00000112796|ENST00000371383|ENPP5	REV__ENSG00000112796|ENST00000371383|ENPP5	MSMS	A375_MHC_IP_R1	1	746.20166015625	2	746.378217	1490.74188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.82	1	103.82	103.32	104.32	0								0	0	0	0.16249	1	38124	38124		5.7319	0.43497	1		+		39364	17756	28910	29143	38338	38338					0.01614055986033236
PQISESNFS	9	Unmodified	_PQISESNFS_					0	0	0		nc|ENSG00000170502|Q9BW91-2|NUDT9;ENSG00000170502|ENST00000302174|NUDT9	nc|ENSG00000170502|Q9BW91-2|NUDT9	nc|ENSG00000170502|Q9BW91-2|NUDT9	MSMS	A375_MHC_IP_R2	2	504.63214111328125	2	504.735271	1007.45599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.9	1	111.64	111.14	112.14	0.73692								0	0	0	0.15468	1	41826	41826		13.906	4.5586	1				39365	7514	28911	29144	38339	38339					-0.04744003587086354
PQISLEGASF	10	Unmodified	_PQISLEGASF_					0	0	0			REV__ENST00000493059.1_1_19:42734948-42736858:-|nuORF	REV__ENST00000493059.1_1_19:42734948-42736858:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	525.1683959960938	2	524.769114	1047.52368	-0.44885	-0.00023554	-0.24223	-0.00012711	-0.69107	-0.00036265	524.7688792792617	104.52	0.56192	105.29	104.95	105.51	0.76308					13	10	2	0	0	0	0.87163	1	39561	39561		13.906	6.6168	1	1390000	+		39366	17406	28912	29145	38340	38340					0.001814463437312952
PQKAALEY	8	Unmodified	_PQKAALEY_					0	0	0		nc|ENSG00000122378|Q9BRX8-2|PRXL2A;ENSG00000122378|ENST00000606162|PRXL2A	nc|ENSG00000122378|Q9BRX8-2|PRXL2A	nc|ENSG00000122378|Q9BRX8-2|PRXL2A	MULTI-MSMS	A375_MHC_IP_R2	2	460.6476745605469	2	460.247818	918.481082	-0.5234	-0.00024089	0.0054047	2.4875E-06	-0.51799	-0.00023841	460.2477215730482	55.347	0.40764	56.098	55.779	56.187	0.75075					14	7	2	0	0	0	0.73946	1	20887	20887		23.148	3.7094	1	2290600			39367	3777	28913	29146	38341	38341					0.01858096006139931
PQKCIECKF	9	Unmodified	_PQKCIECKF_					0	0	0			REV__nc|ENSG00000136155|O95171-3|SCEL	REV__nc|ENSG00000136155|O95171-3|SCEL	MULTI-SECPEP	A375_MHC_IP_R2	2	365.6047668457031	3	365.849034	1094.52527	-0.0026268	-9.6101E-07	0.30306	0.00011087	0.30043	0.00010991	365.84917231452397	32.807	0.50792	33.544	33.317	33.825	0.73692					14	9	2	0	0	0	0.77396	1	11648	11648		1.9064	0.57673	1	2193700	+		39368	18920	28914	29147	38342	38342					-0.018209591635468314
PQKRIIWFWKR	11	Unmodified	_PQKRIIWFWKR_					0	0	0		PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant	PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant	PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	779.4629516601562	2	779.461887	1556.90922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.86	1	127.13	126.63	127.63	0.26593								0	0	0	0.16354	1	49664	49664		0.30703	0	1				39369	15111	28915	29148	38343	38343					0.1530436832142641
PQKRILSKLF	10	Unmodified	_PQKRILSKLF_					0	0	0			REV__ENST00000477714.1_1_22:45706022-45724091:+|nuORF	REV__ENST00000477714.1_1_22:45706022-45724091:+|nuORF	MSMS	A375_MHC_IP_R2	2	615.3912963867188	2	615.390065	1228.76558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.92	1	119.53	119.03	120.03	0.60909								0	0	0	0.15541	1	45223	45223		3.2813	0	1		+		39370	25199	28916	29149	38344	38344					0.16034521490496445
PQKRRLLRRLL	11	Unmodified	_PQKRRLLRRLL_					0	0	0		ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	MSMS	A375_MHC_IP_R1	1	724.9482421875	2	724.986061	1447.95757	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.28	1	124.28	123.78	124.78	0								0	0	0	0.16337	1	46742	46742		1.1933	0.92432	1				39371	10039	28917	29150	38345	38345					0.25150861961355986
PQKRVQERR	9	Unmodified	_PQKRVQERR_					0	0	0			REV__ENST00000487567.2_2_1:236687405-236687798:-|nuORF	REV__ENST00000487567.2_2_1:236687405-236687798:-|nuORF	MSMS	A375_MHC_IP_R1	1	399.6083068847656	3	399.570539	1195.68979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.958	1	40.958	40.458	41.458	0								0	0	0	0.15486	1	14113	14113		3.8763	0	1		+		39372	25336	28918	29151	38346	38346					0.09976937362944227
PQKWFFGYL	9	Unmodified	_PQKWFFGYL_					0	0	0			REV__ENSG00000128268|ENST00000341184|MGAT3	REV__ENSG00000128268|ENST00000341184|MGAT3	MULTI-SECPEP	A375_MHC_IP_R2	2	396.6086120605469	3	395.874565	1184.60187	-0.1908	-7.5531E-05	-0.33965	-0.00013446	-0.53045	-0.00020999	395.8743217338151	45.315	0.60902	46.08	45.694	46.303	0.76519					15	11	2	0	0	0	0.71541	1	16942	16942		7.609	0.13188	1	4145900	+		39373	18444	28919	29152	38347	38347					0.01694923719628605
PQLADPDAPV	10	Unmodified	_PQLADPDAPV_					0	0	0			REV__CXCR6|p.K216Nfs*68|1|0.25|ENSG00000172215|chr3:45947127-45947128|AA/-|frameshift_variant	REV__CXCR6|p.K216Nfs*68|1|0.25|ENSG00000172215|chr3:45947127-45947128|AA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	511.1802673339844	2	511.761289	1021.50803	-0.68345	-0.00034977	0.38888	0.00019901	-0.29458	-0.00015075	511.761873338663	88.537	0.45547	89.269	89.026	89.482	0.7318					11	8	2	0	0	0	0.90853	1	33775	33775		6.7232	0	1	1000300	+		39374	15943	28920	29153	38348	38348					-0.001868401733418068
PQLAPGSQPLL	11	Unmodified	_PQLAPGSQPLL_					0	0	0			REV__nc|ENSG00000225855|Q66K80-2|RUSC1-AS1	REV__nc|ENSG00000225855|Q66K80-2|RUSC1-AS1	MULTI-SECPEP	A375_MHC_IP_R2	2	374.43341064453125	3	374.21688	1119.62881	0.31955	0.00011958	-0.19267	-7.2102E-05	0.12687	4.7477E-05	374.2167075260339	39.571	0.35635	40.345	40.269	40.626	0.77451					10	6	2	0	0	0	1.0005	1	14638	14638		0.36667	0	1	829610	+		39375	27504	28921	29154	38349	38349					0.07377987540144204
PQLCDSPDL	9	Unmodified	_PQLCDSPDL_					0	0	0			REV__ENSG00000189091|ENST00000302516|SF3B3	REV__ENSG00000189091|ENST00000302516|SF3B3	MULTI-SECPEP	A375_MHC_IP_R2	2	493.6813659667969	2	494.226225	986.437897	-0.79258	-0.00039171	4.06	0.0020065	3.2674	0.0016148	494.2257061209556	56.321	0.50922	57.071	56.847	57.356	0.75015					16	9	3	0	0	0	0.73363	1	21359	21359		10.824	0	1	837590	+		39376	22139	28922	29155	38350	38350					-0.05586461833445355
PQLESATEEC	10	Unmodified	_PQLESATEEC_					0	0	0			REV__ENST00000551688.1_1_12:101790345-101801520:-|nuORF	REV__ENST00000551688.1_1_12:101790345-101801520:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	554.6390380859375	2	553.737154	1105.45975	-0.42758	-0.00023677	2.3461	0.0012991	1.9185	0.0010623	554.2384332646548	105.69	0.86269	105.69	105.2	106.06	0					19	16	2	0	0	0	0.69306	1	38840	38840		13.906	1.3745	1	1697800	+		39377	23193	28923	29156	38351	38351					-0.08875701875535924
PQLLLLDWAL	10	Unmodified	_PQLLLLDWAL_					0	0	0			REV__ENST00000300961.10_2_19:2255303-2256413:-|nuORF	REV__ENST00000300961.10_2_19:2255303-2256413:-|nuORF	MSMS	A375_MHC_IP_R2	2	591.5647583007812	2	591.350074	1180.6856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.05	1	105.82	105.32	106.32	0.76308								0	0	0	0.15332	1	39737	39737		10.074	0.6908	1		+		39378	23421	28924	29157	38352	38352					0.10248035096674357
PQLLWYLVF	9	Unmodified	_PQLLWYLVF_					0	0	0		nc|ENSG00000179846|Q17RQ9|NKPD1;ENSG00000179846|ENST00000686631|NKPD1	nc|ENSG00000179846|Q17RQ9|NKPD1	nc|ENSG00000179846|Q17RQ9|NKPD1	MULTI-MSMS	A375_MHC_IP_R1	1	590.733154296875	2	589.83406	1177.65357	-0.55687	-0.00032846	-3.4135	-0.0020134	-3.9703	-0.0023418	590.3329606490942	120.61	0.5038	120.61	120.3	120.8	0					14	9	2	0	0	0	0.58047	1	44674	44674		15.847	3.6065	1	14983000			39379	8253	28925	29158	38353	38353					0.07184667413480383
PQLNCPNYI	9	Unmodified	_PQLNCPNYI_					0	0	0			REV__EPAS1|p.R330C|1|0.97|ENSG00000116016|chr2:46375791-46375791|C/T|missense_variant	REV__EPAS1|p.R330C|1|0.97|ENSG00000116016|chr2:46375791-46375791|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	354.9222106933594	3	354.507665	1060.50117	-0.13726	-4.866E-05	1.0809	0.0003832	0.94366	0.00033454	354.508015812554	48.176	0.45139	48.935	48.68	49.131	0.75896					13	8	2	0	0	0	0.72985	1	18069	18069		2.4985	0.65425	1	1050100	+		39380	26579	28926	29159	38354	38354					-0.026664763255666912
PQLNQIITF	9	Unmodified	_PQLNQIITF_					0	0	0			REV__C1R|p.E317K|1|0.62|ENSG00000159403|chr12:7088699-7088699|C/T|missense_variant	REV__C1R|p.E317K|1|0.62|ENSG00000159403|chr12:7088699-7088699|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	358.5902404785156	3	358.537842	1072.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.2	1	24.2	23.7	24.7	0								0	0	0	0.15486	1	6810	6810		7.1017	1.3699	1		+		39381	15539	28927	29160	38355	38355					0.05830315994353441
PQLPAFGSF	9	Unmodified	_PQLPAFGSF_					0	0	0			REV__nc|ENSG00000116701|P19878-2|NCF2	REV__nc|ENSG00000116701|P19878-2|NCF2	MSMS	A375_MHC_IP_R2	2	482.1871032714844	2	482.25036	962.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.718	1	32.455	31.955	32.955	0.73692								0	0	0	0.15283	1	11232	11232		16.942	0	1		+		39382	17967	28928	29161	38356	38356					0.003423998687708263
PQLPLRRRRRK	11	Unmodified	_PQLPLRRRRRK_					0	0	0		ENST00000510730.5_1_5:175874812-175875019:+|nuORF	ENST00000510730.5_1_5:175874812-175875019:+|nuORF	ENST00000510730.5_1_5:175874812-175875019:+|nuORF	MSMS	A375_MHC_IP_R1	1	738.3901977539062	2	738.478934	1474.94332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.9	1	124.9	124.4	125.4	0								0	0	0	0.16302	1	47242	47242		2.9952	0.26005	1				39383	12900	28929	29162	38357	38357					0.224842095330132
PQLRALPARAE	11	Unmodified	_PQLRALPARAE_					0	0	0		nc|ENSG00000223501|Q8N1B4-2|VPS52;ENSG00000223501|ENST00000445902|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	MULTI-MSMS	A375_MHC_IP_R1	1	611.7559204101562	2	611.356754	1220.69895	-0.54979	-0.00033611	-0.87346	-0.00053399	-1.4232	-0.00087011	611.3560661309215	130.08	2.6346	130.08	129.5	132.13	0					205	51	7	0	0	0	0.73672	1	49985	49985		2.4985	0	1	1337400000			39384	9685	28930	29163	38358	38358					0.09743285928607293
PQLRRKQQRWK	11	Unmodified	_PQLRRKQQRWK_					0	0	0		nc|ENSG00000087460|P84996|GNAS	nc|ENSG00000087460|P84996|GNAS	nc|ENSG00000087460|P84996|GNAS	MSMS	A375_MHC_IP_R1	1	762.499267578125	2	762.455125	1522.8957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.91	1	112.91	112.41	113.41	0								0	0	0	0.16354	1	41386	41386		0.30703	0	1				39385	14493	28931	29164	38359	38359					0.1551651054217018
PQLRRVMP	8	Unmodified	_PQLRRVMP_					0	0	0		nc|ENSG00000157343|Q5T9G4-3|ARMC12;ENSG00000157343|ENST00000373866|ARMC12;nc|ENSG00000157343|Q5T9G4-2|ARMC12	nc|ENSG00000157343|Q5T9G4-3|ARMC12	nc|ENSG00000157343|Q5T9G4-3|ARMC12	MULTI-SECPEP	A375_MHC_IP_R1	1	996.5650634765625	1	996.577131	995.569854	0.39035	0.00038902	-1.2928	-0.0012884	-0.90247	-0.00089938	996.577574965204	117.57	0.25443	117.57	117.41	117.66	0					6	4	2	0	0	0	0.972	1	43175	43175		2.3027	0.24298	1	7905600			39386	6237	28932	29165	38360	38360					0.07189232764812914
PQLVKGPP	8	Unmodified	_PQLVKGPP_					0	0	0			REV__ENSG00000167393|ENST00000390665|PPP2R3B	REV__ENSG00000167393|ENST00000390665|PPP2R3B	MSMS	A375_MHC_IP_R2	2	418.2703857421875	2	418.255446	834.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.961	1	20.571	20.071	21.071	0.61029								0	0	0	0.16876	1	6173	6173		5.7604	3.1829	1		+		39387	20755	28933	29166	38361	38361					0.07247007593991839
PQLWQRCLERL	11	Unmodified	_PQLWQRCLERL_					0	0	0			REV__ENSG00000189298|ENST00000252211|ZKSCAN3	REV__ENSG00000189298|ENST00000252211|ZKSCAN3	MULTI-MSMS	A375_MHC_IP_R2	2	481.2005310058594	3	481.262606	1440.76599	-0.53995	-0.00025986	0.58761	0.0002828	0.047664	2.2939E-05	481.2627654958341	131.98	1.2694	132.17	131.24	132.51	0.18954					48	24	4	0	0	0	0.73557	1	51608	51608		3.5927	2.263	1	7588500	+		39388	22148	28934	29167	38362	38362					0.06323573148029027
PQNEFETLRKR	11	Unmodified	_PQNEFETLRKR_					0	0	0		ENSG00000107021|ENST00000372648|TBC1D13;nc|ENSG00000107021|Q9NVG8-2|TBC1D13	ENSG00000107021|ENST00000372648|TBC1D13	ENSG00000107021|ENST00000372648|TBC1D13	MULTI-SECPEP	A375_MHC_IP_R2	2	473.1796875	3	473.256397	1416.74736	-0.80129	-0.00037922	-1.793	-0.00084854	-2.5943	-0.0012278	473.25578365127853	35.304	0.80779	36.068	35.576	36.384	0.76338					20	15	2	0	0	0	0.99916	1	12751	12751		2.4348	2.0265	1	3664500			39389	2721	28935	29168	38363	38363					0.05565734777837861
PQNLALSV	8	Unmodified	_PQNLALSV_					0	0	0		ENST00000420095.1_1_3:8263573-8263864:-|nuORF	ENST00000420095.1_1_3:8263573-8263864:-|nuORF	ENST00000420095.1_1_3:8263573-8263864:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	842.1216430664062	1	841.477794	840.470518	-0.34809	-0.00029291	0.31193	0.00026249	-0.036154	-3.0423E-05	841.4779956535757	73.449	0.45618	73.449	73.184	73.64	0					13	8	2	0	0	0	0.73563	1	26794	26794		44.407	0.54872	1	2979100			39390	11723	28936	29169	38364	38364					0.043901133517124435
PQNLALSV	8	Unmodified	_PQNLALSV_					0	0	0		ENST00000420095.1_1_3:8263573-8263864:-|nuORF	ENST00000420095.1_1_3:8263573-8263864:-|nuORF	ENST00000420095.1_1_3:8263573-8263864:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	841.477794	840.470518	-0.80726	-0.00067929	0.021392	1.8001E-05	-0.78587	-0.00066129	841.4777016777967	72.681	0.45776	73.416	73.175	73.633	0.73541	-0.016504	-0.00015647	NaN	44.407	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3410100			39391	11723	28936	29169							0.043901133517124435
PQNPSIHSW	9	Unmodified	_PQNPSIHSW_					0	0	0		SLC23A3|p.T33I|1|0.57|ENSG00000213901|chr2:219169887-219169887|G/A|missense_variant	SLC23A3|p.T33I|1|0.57|ENSG00000213901|chr2:219169887-219169887|G/A|missense_variant	SLC23A3|p.T33I|1|0.57|ENSG00000213901|chr2:219169887-219169887|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	533.6871948242188	2	533.259248	1064.50394	-1.1438	-0.00060995	0.16593	8.8482E-05	-0.97789	-0.00052147	533.2591519650588	59.33	0.8614	60.077	59.742	60.603	0.74714					43	16	4	0	0	0	0.67332	1	22357	22357		9.3831	1.2276	1	23656000			39392	29173	28937	29170	38365	38365					-0.025728848763719725
PQPPPLTPRQ	10	Unmodified	_PQPPPLTPRQ_					0	0	0			REV__nc|ENSG00000006740|Q17R89-2|ARHGAP44	REV__nc|ENSG00000006740|Q17R89-2|ARHGAP44	MULTI-SECPEP	A375_MHC_IP_R2	2	377.24908447265625	3	377.548741	1129.62439	-0.07667	-2.8947E-05	1.1765	0.00044417	1.0998	0.00041522	377.5487874807177	23.984	0.20587	24.614	24.485	24.691	0.63014					7	3	3	0	0	0	0.91773	1	7822	7822		6.6235	1.2207	1	1845300	+		39393	16143	28938	29171	38366	38366					0.06476523117203214
PQPPQQPLPL	10	Unmodified	_PQPPQQPLPL_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	MULTI-MSMS	A375_MHC_IP_R1	1	372.6018371582031	3	372.213358	1113.61824	0.21684	8.0712E-05	0.15258	5.6792E-05	0.36942	0.0001375	372.21330495693496	41.906	0.5597	41.906	41.674	42.233	0					25	10	4	0	0	0	0.72358	1	14558	14558		1.7423	0.41263	1	9817500			39394	1631	28939	29172	38367	38367					0.06598004885699993
PQPVLHGKIGK	11	Unmodified	_PQPVLHGKIGK_					0	0	0		CNGB1|p.E278K|1|0.12|ENSG00000070729|chr16:57958415-57958415|C/T|missense_variant	CNGB1|p.E278K|1|0.12|ENSG00000070729|chr16:57958415-57958415|C/T|missense_variant	CNGB1|p.E278K|1|0.12|ENSG00000070729|chr16:57958415-57958415|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	391.2911682128906	3	391.908269	1172.70298	0.1395	5.4669E-05	-0.025682	-1.0065E-05	0.11381	4.4604E-05	392.24259507372136	34.026	0.45535	34.026	33.798	34.253	0					11	8	2	0	0	0	0.99482	1	11249	11249		6.2344	0	1	2079300			39395	547	28940	29173	38368	38368					0.12353375422321733
PQQELVEMSY	10	Unmodified	_PQQELVEMSY_					0	0	0		ENSG00000168447|ENST00000343070|SCNN1B;nc|ENSG00000168447|P51168-2|SCNN1B	ENSG00000168447|ENST00000343070|SCNN1B	ENSG00000168447|ENST00000343070|SCNN1B	MULTI-MSMS	A375_MHC_IP_R1	1	612.6837768554688	2	612.284271	1222.55399	-0.70515	-0.00043176	0.059607	3.6497E-05	-0.64555	-0.00039526	612.284239596982	38.143	0.40751	38.143	37.964	38.371	0					13	7	2	0	0	0	0.69306	1	12940	12940		13.906	0	1	3574700			39396	7303	28941	29174	38369	38369					-0.04838563053385769
PQQELVEMSY	10	Unmodified	_PQQELVEMSY_					0	0	0		ENSG00000168447|ENST00000343070|SCNN1B;nc|ENSG00000168447|P51168-2|SCNN1B	ENSG00000168447|ENST00000343070|SCNN1B	ENSG00000168447|ENST00000343070|SCNN1B	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	612.284271	1222.55399	-0.70515	-0.00043176	0.059607	3.6497E-05	-0.64555	-0.00039526	612.284239596982	38.143	0.40751	38.143	37.964	38.371	0	-0.065618	-9.2184E-06	NaN	13.906	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3574700			39397	7303	28941	29174							-0.04838563053385769
PQQELVEMSY	10	Unmodified	_PQQELVEMSY_					0	0	0		ENSG00000168447|ENST00000343070|SCNN1B;nc|ENSG00000168447|P51168-2|SCNN1B	ENSG00000168447|ENST00000343070|SCNN1B	ENSG00000168447|ENST00000343070|SCNN1B	MULTI-MATCH	A375_MHC_IP_R2	2		2	612.284271	1222.55399	-0.87736	-0.0005372	0.079632	4.8757E-05	-0.79773	-0.00048844	612.2842060869214	37.504	0.40869	38.274	38.02	38.429	0.7709	0.065618	1.5303E-05	NaN	13.906	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3062700			39398	7303	28941	29174							-0.04838563053385769
PQQHRILKIV	10	Unmodified	_PQQHRILKIV_					0	0	0		ENST00000435880.6_1_2:70190299-70191494:-|nuORF	ENST00000435880.6_1_2:70190299-70191494:-|nuORF	ENST00000435880.6_1_2:70190299-70191494:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	411.28143310546875	3	411.259302	1230.75608	-0.26305	-0.00010818	1.3086	0.00053817	1.0455	0.00042999	411.59438129062096	19.198	0.30274	19.801	19.683	19.986	0.60308					6	5	2	0	0	0	0.72358	1	5897	5897		1.7423	0.41263	1	755030			39399	11919	28942	29175	38370	38370					0.14992753204978726
PQQKNPLRHRL	11	Unmodified	_PQQKNPLRHRL_					0	0	0			REV__nc|ENSG00000136111|O60343-3|TBC1D4	REV__nc|ENSG00000136111|O60343-3|TBC1D4	MSMS	A375_MHC_IP_R1	1	693.9507446289062	2	693.907476	1385.8004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.42	1	118.42	117.92	118.92	0								0	0	0	0.14837	1	43591	43591		21.537	16.64	1		+		39400	27243	28943	29176	38371	38371					0.1229315735115506
PQQLEPEQPW	10	Unmodified	_PQQLEPEQPW_					0	0	0			REV__ENST00000416555.1_1_21:41097810-41097978:+|nuORF	REV__ENST00000416555.1_1_21:41097810-41097978:+|nuORF	MSMS	A375_MHC_IP_R2	2	625.8843994140625	2	626.303852	1250.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.94	1	118.55	118.05	119.05	0.60909								0	0	0	0.15089	1	44710	44710		16.149	4.5088	1		+		39401	24535	28944	29177	38372	38372					-0.022120947075336517
PQQLSRLP	8	Unmodified	_PQQLSRLP_					0	0	0			REV__ENSG00000198049|ENST00000367126|AVPR1B	REV__ENSG00000198049|ENST00000367126|AVPR1B	MULTI-SECPEP	A375_MHC_IP_R2	2	469.14801025390625	2	469.774534	937.534515	-0.79435	-0.00037317	0.6201	0.0002913	-0.17426	-8.1862E-05	469.77491206009097	34.609	0.25283	35.372	35.273	35.525	0.76338					6	4	2	0	0	0	0.94479	1	12476	12476		13.508	12.983	1	518550	+		39402	22341	28945	29178	38373	38373					0.06324893508644891
PQQPTASGY	9	Unmodified	_PQQPTASGY_					0	0	0			REV__ENSG00000167615|ENST00000326764|LENG8	REV__ENSG00000167615|ENST00000326764|LENG8	MULTI-MSMS	A375_MHC_IP_R1	1	475.1239929199219	2	474.724707	947.43486	-0.50018	-0.00023745	0.14774	7.0138E-05	-0.35244	-0.00016731	474.7246982743236	96.057	0.50761	96.057	95.817	96.325	0					16	9	2	0	0	0	0.68216	1	35323	35323		8.5933	0	1	1384700	+		39403	20777	28946	29179	38374	38374					-0.040959688959446794
PQRKRRRRERR	11	Unmodified	_PQRKRRRRERR_					0	0	0		ENST00000444772.3_1_10:21805118-21806168:-|nuORF	ENST00000444772.3_1_10:21805118-21806168:-|nuORF	ENST00000444772.3_1_10:21805118-21806168:-|nuORF	MSMS	A375_MHC_IP_R2	2	531.9412231445312	3	531.996356	1592.96724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.606	1	23.236	22.736	23.736	0.63014								0	0	0	0.16358	1	7191	7191		0.08335	0.08335	1				39404	12021	28947	29180	38375	38375					0.19447443019430466
PQRLQIIRN	9	Unmodified	_PQRLQIIRN_					0	0	0		ENSG00000178409|ENST00000369042|BEND3	ENSG00000178409|ENST00000369042|BEND3	ENSG00000178409|ENST00000369042|BEND3	MSMS	A375_MHC_IP_R2	2	379.94879150390625	3	379.899885	1136.67783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.762	1	41.537	41.037	42.037	0.77451								0	0	0	0.15486	1	15104	15104		9.544	0	1				39405	8159	28948	29181	38376	38376					0.114953206197697
PQRLSAQLL	9	Unmodified	_PQRLSAQLL_					0	0	0			REV__ENST00000265678.8_1_6:166825790-166826246:-|nuORF	REV__ENST00000265678.8_1_6:166825790-166826246:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	513.6668090820312	2	513.308741	1024.60293	-0.73104	-0.00037525	-0.42265	-0.00021695	-1.1537	-0.0005922	513.3083585470271	32.641	0.55468	32.641	32.282	32.836	0					17	10	2	0	0	0	0.5212	1	10555	10555		26.268	2.2476	1	1543700	+		39406	23252	28949	29182	38377	38377					0.09161138088529697
PQRLSAQLL	9	Unmodified	_PQRLSAQLL_					0	0	0			REV__ENST00000265678.8_1_6:166825790-166826246:-|nuORF	REV__ENST00000265678.8_1_6:166825790-166826246:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	513.7081909179688	2	513.308741	1024.60293	-0.7735	-0.00039705	-0.43157	-0.00022153	-1.2051	-0.00061858	513.3084937849369	31.769	0.4566	32.506	32.198	32.654	0.73692					12	8	2	0	0	0	0.5212	1	11275	11275		32.786	2.1491	1	1999700	+		39407	23252	28949	29182	38378	38378					0.09161138088529697
PQRPKVLEL	9	Unmodified	_PQRPKVLEL_					0	0	0		nc|ENSG00000182923|Q96MT8-4|CEP63;ENST00000510625.1_1_3:134255984-134293730:+|nuORF	nc|ENSG00000182923|Q96MT8-4|CEP63	nc|ENSG00000182923|Q96MT8-4|CEP63	MULTI-SECPEP	A375_MHC_IP_R1	1	360.2729187011719	3	360.557236	1078.64988	0.14745	5.3163E-05	-0.050057	-1.8049E-05	0.097388	3.5114E-05	360.5571907113366	43.891	1.0208	43.891	43.502	44.523	0					39	19	3	0	0	0	0.775	1	15375	15375		10.8	0.64894	1	5650500			39408	14806	28950	29183	38379	38379					0.11369997639667417
PQRPKVLEL	9	Unmodified	_PQRPKVLEL_					0	0	0		nc|ENSG00000182923|Q96MT8-4|CEP63;ENST00000510625.1_1_3:134255984-134293730:+|nuORF	nc|ENSG00000182923|Q96MT8-4|CEP63	nc|ENSG00000182923|Q96MT8-4|CEP63	MULTI-SECPEP	A375_MHC_IP_R2	2	360.27288818359375	3	360.557236	1078.64988	-0.11127	-4.0119E-05	0.043617	1.5726E-05	-0.067653	-2.4393E-05	360.5571752199058	42.896	0.86141	43.668	43.319	44.181	0.7724					39	16	4	0	0	0	0.76106	1	16044	16044		13.615	5.1706	1	5666000			39409	14806	28950	29183	38380	38380					0.11369997639667417
PQRWWRRPRR	10	Unmodified	_PQRWWRRPRR_					0	0	0			REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF	REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	746.7775268554688	2	747.426702	1492.83885	-0.88638	-0.00066251	-1.3776	-0.0010297	-2.264	-0.0016922	747.4255792293599	62.716	0.25169	63.459	63.282	63.534	0.74263					6	4	2	0	0	0	0.94862	1	23719	23719		1.6526	0.32309	1	1549600	+		39410	24056	28951	29184	38381	38381					0.11214507776321625
PQSPLPASQLP	11	Unmodified	_PQSPLPASQLP_					0	0	0			REV__BCL11A|p.P368L|1|0.06|ENSG00000119866|chr2:60461809-60461809|G/A|missense_variant	REV__BCL11A|p.P368L|1|0.06|ENSG00000119866|chr2:60461809-60461809|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	378.6206359863281	3	378.876634	1133.60807	0.18958	7.1829E-05	-0.10287	-3.8975E-05	0.086714	3.2854E-05	378.87662551363337	19.348	0.63953	19.348	19.238	19.877	0					16	12	2	0	0	0	0.88813	1	4884	4884		19.987	13.363	1	2247400	+		39411	15502	28952	29185	38382	38382					0.04661397160452907
PQSYSLIHQL	10	Unmodified	_PQSYSLIHQL_					0	0	0		nc|ENSG00000148200|Q15406-3|NR6A1;nc|ENSG00000148200|Q15406-5|NR6A1;nc|ENSG00000148200|Q15406-2|NR6A1;nc|ENSG00000148200|Q15406-4|NR6A1;ENSG00000148200|ENST00000487099|NR6A1	nc|ENSG00000148200|Q15406-3|NR6A1	nc|ENSG00000148200|Q15406-3|NR6A1	MULTI-MSMS	A375_MHC_IP_R2	2	396.2489318847656	3	395.880267	1184.61897	-0.43869	-0.00017367	-3.1486	-0.0012465	-3.5873	-0.0014201	395.8791191459462	23.338	0.7088	23.968	23.726	24.435	0.63014					21	13	2	0	0	0	0.70972	1	7552	7552		7.9454	0.33645	1	5213100			39412	5723	28953	29186	38383	38383					0.03404799534769154
PQTFDPNAFE	10	Unmodified	_PQTFDPNAFE_					0	0	0			REV__ENSG00000115091|ENST00000263238|ACTR3	REV__ENSG00000115091|ENST00000263238|ACTR3	MULTI-MSMS	A375_MHC_IP_R1	1	583.660888671875	2	583.261653	1164.50875	-0.55126	-0.00032153	-0.50404	-0.00029399	-1.0553	-0.00061552	583.2612670415655	124.57	0.55692	124.57	124.29	124.85	0					17	10	3	0	0	0	0.70012	1	46982	46982		12.241	0.60036	1	28775000	+		39413	17855	28954	29187	38384	38384					-0.06692045524323476
PQTGIVDE	8	Unmodified	_PQTGIVDE_					0	0	0		IGF1|p.R85K|1|0.36|ENSG00000017427|chr12:102419657-102419657|C/T|missense_variant;nc|ENSG00000017427|P05019-3|IGF1;ENSG00000017427|ENST00000337514|IGF1;nc|ENSG00000017427|P05019-4|IGF1;nc|ENSG00000017427|P05019|IGF1	IGF1|p.R85K|1|0.36|ENSG00000017427|chr12:102419657-102419657|C/T|missense_variant	IGF1|p.R85K|1|0.36|ENSG00000017427|chr12:102419657-102419657|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	429.65814208984375	2	429.713808	857.413062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.08	1	37.851	37.351	38.351	0.7709								0	0	0	0.16876	1	13549	13549		14.838	0.25658	1				39414	1041	28955	29188	38385	38385					-0.021347736445136434
PQTGQPEQY	9	Unmodified	_PQTGQPEQY_					0	0	0			REV__ENST00000473095.1_1_7:56170554-56174106:-|nuORF	REV__ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6709594726562	2	524.240721	1046.46689	-0.57432	-0.00030108	-0.72856	-0.00038194	-1.3029	-0.00068302	524.2403272036029	87.036	1.0172	87.036	86.781	87.798	0					33	19	2	0	0	0	0.67483	1	32179	32179		20.454	10.38	1	3165900	+		39415	17433	28956	29189	38386	38386					-0.054486012128108996
PQTLPLSPVE	10	Unmodified	_PQTLPLSPVE_					0	0	0		ENST00000392859.7_1_11:118443107-118443263:+|nuORF	ENST00000392859.7_1_11:118443107-118443263:+|nuORF	ENST00000392859.7_1_11:118443107-118443263:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	360.2611083984375	3	360.869368	1079.58628	-0.00067508	-2.4362E-07	-0.39237	-0.0001416	-0.39305	-0.00014184	360.86926343098855	28.145	0.35195	28.145	27.987	28.339	0					11	6	2	0	0	0	0.8866	1	8725	8725		9.2438	4.1963	1	1430600			39416	11430	28957	29190	38387	38387					0.04966592411892634
PQTLPLSPVE	10	Unmodified	_PQTLPLSPVE_					0	0	0		ENST00000392859.7_1_11:118443107-118443263:+|nuORF	ENST00000392859.7_1_11:118443107-118443263:+|nuORF	ENST00000392859.7_1_11:118443107-118443263:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	360.869368	1079.58628	-0.12703	-4.5842E-05	-0.77826	-0.00028085	-0.90529	-0.00032669	360.86893118169746	27.503	0.50923	28.182	27.792	28.301	0.67857	0.018368	-0.0003622	NaN	9.2438	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2559800			39417	11430	28957	29190							0.04966592411892634
PQTYGSCCYT	10	Unmodified	_PQTYGSCCYT_					0	0	0		ENST00000370397.7_1_10:101949281-101949353:-|nuORF	ENST00000370397.7_1_10:101949281-101949353:-|nuORF	ENST00000370397.7_1_10:101949281-101949353:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	562.1177368164062	2	561.715167	1121.41578	-0.49174	-0.00027622	2.3146	0.0013001	1.8228	0.0010239	561.7173554062964	89.634	0.50499	89.634	89.375	89.88	0					16	9	2	0	0	0	0.90513	1	32948	32948		12.241	2.1667	1	1816900			39418	11150	28958	29191	38388	38388					-0.1400700957351546
PQVKREPKK	9	Unmodified	_PQVKREPKK_					0	0	0			REV__ENST00000567333.1_1_16:34489743-34489893:-|nuORF	REV__ENST00000567333.1_1_16:34489743-34489893:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	370.92431640625	3	370.564502	1108.67168	0.39831	0.0001476	-0.21129	-7.8298E-05	0.18702	6.9303E-05	370.5644079632017	28.523	0.50668	28.523	28.238	28.745	0					26	9	4	0	0	0	0.78798	1	8780	8780		0.86438	0	1	14953000	+		39419	26253	28959	29192	38389	38389					0.12168802388214317
PQVRHPTWT	9	Unmodified	_PQVRHPTWT_					0	0	0			REV__ENST00000514248.1_1_4:2272662-2273465:-|nuORF	REV__ENST00000514248.1_1_4:2272662-2273465:-|nuORF	MSMS	A375_MHC_IP_R1	1	374.4336853027344	3	374.533202	1120.57778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.457	1	38.457	37.957	38.957	0								0	0	0	0.15486	1	13047	13047		2.4985	0.59211	1		+		39420	25649	28960	29193	38390	38390					0.022310832859375296
PQVRNHYFPS	10	Unmodified	_PQVRNHYFPS_					0	0	0		nc|ENSG00000204396|Q9Y334-2|VWA7	nc|ENSG00000204396|Q9Y334-2|VWA7	nc|ENSG00000204396|Q9Y334-2|VWA7	MULTI-SECPEP	A375_MHC_IP_R1	1	415.25714111328125	3	415.543878	1243.60981	0.043525	1.8086E-05	0.25481	0.00010589	0.29834	0.00012397	415.5439263256778	23.939	0.40534	23.939	23.737	24.143	0					13	7	3	0	0	0	0.92957	1	6646	6646		0.56317	0.56317	1	2973000			39421	14860	28961	29194	38391	38391					-0.002255490309153174
PQVRRYIIY	9	Unmodified	_PQVRRYIIY_					0	0	0		nc|ENSG00000157693|Q5VZI3-2|TMEM268;ENSG00000157693|ENST00000288502|TMEM268;nc|ENSG00000157693|Q5VZI3-3|TMEM268	nc|ENSG00000157693|Q5VZI3-2|TMEM268	nc|ENSG00000157693|Q5VZI3-2|TMEM268	MULTI-MSMS	A375_MHC_IP_R2	2	605.3615112304688	2	604.35094	1206.68733	-0.43478	-0.00026276	-0.72474	-0.000438	-1.1595	-0.00070076	604.3507821036494	96.193	0.5587	96.943	96.703	97.262	0.75045					16	10	3	0	0	0	0.64808	1	36483	36483		11.64	0.81637	1	999720			39422	6261	28962	29195	38392	38392					0.09225088905282064
PQVVRWLRLRR	11	Unmodified	_PQVVRWLRLRR_					0	0	0		ENST00000603271.1_3_19:58331137-58367481:+|nuORF;ENST00000593873.5_3_19:58331110-58369965:+|nuORF	ENST00000603271.1_3_19:58331137-58367481:+|nuORF	ENST00000603271.1_3_19:58331137-58367481:+|nuORF	MSMS	A375_MHC_IP_R2	2	739.9559326171875	2	739.962586	1477.91062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.23	1	125.53	125.03	126.03	0.2951								0	0	0	0.16249	1	48741	48741		5.7319	2.4505	1				39423	13830	28963	29196	38393	38393					0.1907800241019686
PQWRARRWRWW	11	Unmodified	_PQWRARRWRWW_					0	0	0			REV__nc|ENSG00000171160|Q8NDC4-2|MORN4	REV__nc|ENSG00000171160|Q8NDC4-2|MORN4	MSMS	A375_MHC_IP_R1	1	842.3394165039062	2	842.447634	1682.88072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.8	1	132.8	132.3	133.3	0								0	0	0	0.16354	1	51203	51203		0.30703	0.30703	1		+		39424	27355	28964	29197	38394	38394					0.06659063464871906
PQWYRHTFE	9	Unmodified	_PQWYRHTFE_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	A375_MHC_IP_R2	2	422.26837158203125	3	421.868362	1262.58326	-0.16938	-7.1457E-05	0.50929	0.00021485	0.33991	0.0001434	421.8686295099573	45.357	0.60625	46.122	45.796	46.403	0.76519					33	11	4	0	0	0	0.78348	1	16918	16918		2.4985	1.427	1	11132000			39425	9326	28965	29198	38395	38395					-0.037532379222511736
PQWYRHTFE	9	Unmodified	_PQWYRHTFE_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	421.868362	1262.58326	0.014166	5.9763E-06	0.5436	0.00022933	0.55777	0.00023531	421.8686251530062	46.227	4.6205	46.227	45.89	50.51	0	0.052459	1.6511E-05	NaN	2.4985	139	90	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9125100			39426	9326	28965	29198							-0.037532379222511736
PQYRLCLP	8	Unmodified	_PQYRLCLP_					0	0	0		ENST00000348227.4_1_2:74650500-74651044:+|nuORF	ENST00000348227.4_1_2:74650500-74651044:+|nuORF	ENST00000348227.4_1_2:74650500-74651044:+|nuORF	MSMS	A375_MHC_IP_R1	1	495.1822509765625	2	495.265487	988.516422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.632	1	45.632	45.132	46.132	0								0	0	0	0.16876	1	15977	15977		18.135	1.0221	1				39427	10917	28966	29199	38396	38396					0.021704352622805345
PRALRAALA	9	Unmodified	_PRALRAALA_					0	0	0			REV__ENSG00000204128|ENST00000373640|C2orf72	REV__ENSG00000204128|ENST00000373640|C2orf72	MULTI-MSMS	A375_MHC_IP_R1	1	938.9881591796875	1	938.58941	937.582134	-0.36749	-0.00034492	-0.41649	-0.00039091	-0.78398	-0.00073584	938.588841862044	143.86	0.2012	143.86	143.73	143.94	0					6	3	2	0	0	0	0.77827	1	55206	55206		0	0	1	2638900	+		39428	22488	28967	29200	38397	38397					0.1108459249948055
PRALRAALA	9	Unmodified	_PRALRAALA_					0	0	0			REV__ENSG00000204128|ENST00000373640|C2orf72	REV__ENSG00000204128|ENST00000373640|C2orf72	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	938.58941	937.582134	-0.36749	-0.00034492	-0.41649	-0.00039091	-0.78398	-0.00073584	938.588841862044	143.86	0.2012	143.86	143.73	143.94	0	-0.027315	-0.0001215	NaN	0	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2638900	+		39429	22488	28967	29200							0.1108459249948055
PRALRAALA	9	Unmodified	_PRALRAALA_					0	0	0			REV__ENSG00000204128|ENST00000373640|C2orf72	REV__ENSG00000204128|ENST00000373640|C2orf72	MULTI-MATCH	A375_MHC_IP_R2	2		1	938.58941	937.582134	-0.036054	-3.3839E-05	-0.18157	-0.00017042	-0.21762	-0.00020426	938.5888562300314	143.89	0.19893	143.92	143.79	143.99	0.024414	0.027315	9.8997E-05	NaN	0	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2036900	+		39430	22488	28967	29200							0.1108459249948055
PRALTTFGRR	10	Unmodified	_PRALTTFGRR_					0	0	0			REV__ENST00000429241.1_1:144283121-144311511:-|nuORF	REV__ENST00000429241.1_1:144283121-144311511:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	393.5941467285156	3	392.231634	1173.67307	0.44352	0.00017396	-0.35938	-0.00014096	0.084138	3.3002E-05	392.23153728122537	21.99	0.76239	21.99	21.606	22.368	0					55	14	5	0	0	0	0.69875	1	5840	5840		12.856	1.957	1	181940000	+		39431	24686	28968	29201	38398	38398					0.09318436476996794
PRANPSAFL	9	Unmodified	_PRANPSAFL_					0	0	0		ENSG00000106537|ENST00000262067|TSPAN13;ENST00000546993.5_1_12:58140965-58141070:+|nuORF;ENSG00000135452|ENST00000257910|TSPAN31	ENSG00000106537|ENST00000262067|TSPAN13;ENSG00000135452|ENST00000257910|TSPAN31	ENSG00000106537|ENST00000262067|TSPAN13	MULTI-MSMS	A375_MHC_IP_R1	1	487.66839599609375	2	486.766709	971.518865	-0.059788	-2.9103E-05	-0.50473	-0.00024569	-0.56452	-0.00027479	486.76635599398844	53.956	0.96165	53.956	53.605	54.567	0					42	18	3	0	0	0	0.53367	1	19205	19205		18.146	2.2992	1	21234000			39432	2696;4686	28969	29202	38399	38399					0.03196606991616591
PRANPSAFL	9	Unmodified	_PRANPSAFL_					0	0	0		ENSG00000106537|ENST00000262067|TSPAN13;ENST00000546993.5_1_12:58140965-58141070:+|nuORF;ENSG00000135452|ENST00000257910|TSPAN31	ENSG00000106537|ENST00000262067|TSPAN13;ENSG00000135452|ENST00000257910|TSPAN31	ENSG00000106537|ENST00000262067|TSPAN13	MULTI-MSMS	A375_MHC_IP_R2	2	487.1660461425781	2	486.766709	971.518865	-1.1473	-0.00055844	-0.24204	-0.00011782	-1.3893	-0.00067626	486.76651168996966	53.013	1.1729	53.764	53.436	54.609	0.75105					42	22	3	0	0	0	0.047602	2	19962	19962;20043		65.235	20.828	1	22160000			39433	2696;4686	28969	29202	38400;38401	38400					0.03196606991616591
PRAVPINAVET	11	Unmodified	_PRAVPINAVET_					0	0	0			REV__nc|ENSG00000129003|Q709C8-4|VPS13C	REV__nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-SECPEP	A375_MHC_IP_R2	2	390.2898254394531	3	389.555784	1165.64552	-0.44735	-0.00017427	0.32421	0.0001263	-0.12314	-4.797E-05	389.55593172120285	19.334	0.8082	19.937	19.583	20.392	0.60308					23	15	2	0	0	0	0.98663	1	5945	5945		16.275	7.2983	1	4543300	+		39434	18478	28970	29203	38402	38402					0.06932488426082273
PRAWLDQDP	9	Unmodified	_PRAWLDQDP_					0	0	0			REV__ENST00000412023.5_1_12:6993021-6993087:+|nuORF	REV__ENST00000412023.5_1_12:6993021-6993087:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	549.2632446289062	2	549.272355	1096.53016	-1.1028	-0.00060576	0.085317	4.6862E-05	-1.0175	-0.0005589	549.2721826619684	29.758	1.8715	30.456	30.032	31.903	0.69872					64	36	3	0	0	0	0.2487	1	10373	10373		34.402	3.1334	1	4635100	+		39435	24486	28971	29204	38403	38403					-0.014246157049228714
PRCGPKGG	8	Unmodified	_PRCGPKGG_					0	0	0			REV__nc|ENSG00000133858|O60293-2|ZFC3H1	REV__nc|ENSG00000133858|O60293-2|ZFC3H1	MULTI-MSMS	A375_MHC_IP_R1	1	771.7930297851562	1	771.393019	770.385742	-0.82994	-0.00064021	0.88147	0.00067996	0.051526	3.9747E-05	771.3935259968456	143.27	0.50322	143.27	142.94	143.45	0					13	9	2	0	0	0	0.77861	1	54999	54999		0	0	1	3357600	+		39436	18737	28972	29205	38404	38404					-0.008635356658828641
PRDVQARMLSS	11	Unmodified	_PRDVQARMLSS_					0	0	0		nc|ENSG00000153707|P23468-2|PTPRD;nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-7|PTPRD;nc|ENSG00000153707|P23468-5|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-6|PTPRD;ENSG00000153707|ENST00000381196|PTPRD	nc|ENSG00000153707|P23468-2|PTPRD	nc|ENSG00000153707|P23468-2|PTPRD	MULTI-MSMS	A375_MHC_IP_R1	1	631.260498046875	2	630.329879	1258.6452	-0.83938	-0.00052909	0.3556	0.00022414	-0.48378	-0.00030494	630.3297825223409	130.08	1.2695	130.08	129.55	130.82	0					40	24	3	0	0	0	0.73189	1	49969	49969		7.1017	1.3699	1	19170000			39437	14689	28973	29206	38405	38405					0.026227454345871593
PRDVQARMLSS	11	Unmodified	_PRDVQARMLSS_					0	0	0		nc|ENSG00000153707|P23468-2|PTPRD;nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-7|PTPRD;nc|ENSG00000153707|P23468-5|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-6|PTPRD;ENSG00000153707|ENST00000381196|PTPRD	nc|ENSG00000153707|P23468-2|PTPRD	nc|ENSG00000153707|P23468-2|PTPRD	MULTI-MSMS	A375_MHC_IP_R2	2	631.2600708007812	2	630.329879	1258.6452	-0.83558	-0.00052669	0.11238	7.0837E-05	-0.7232	-0.00045585	630.3298709189208	129.95	1.3659	130.16	129.54	130.91	0.2142					57	26	3	0	0	0	0.73189	1	51016	51016		7.1017	1.3699	1	14576000			39438	14689	28973	29206	38406	38406					0.026227454345871593
PREQLLFFLRR	11	Unmodified	_PREQLLFFLRR_					0	0	0			REV__chr20:36607818-36607869|308|13.24|0.0|20.34|+|0|TGIF2-RAB5IF,None|1	REV__chr20:36607818-36607869|308|13.24|0.0|20.34|+|0|TGIF2-RAB5IF,None|1	MSMS	A375_MHC_IP_R1	1	737.778564453125	2	737.935702	1473.85685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.48	1	118.48	117.98	118.98	0								0	0	0	0.16279	1	43640	43640		4.1895	1.4543	1		+		39439	15741	28974	29207	38407	38407					0.1388778518783056
PRESLETENVL	11	Unmodified	_PRESLETENVL_					0	0	0		nc|ENSG00000101773|Q99708-3|RBBP8;ENSG00000101773|ENST00000327155|RBBP8;nc|ENSG00000101773|Q99708-2|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	MULTI-MSMS	A375_MHC_IP_R2	2	644.2326049804688	2	643.832974	1285.6514	-0.64564	-0.00041568	-0.048416	-3.1172E-05	-0.69405	-0.00044685	643.8329795737641	42.115	0.66268	42.887	42.656	43.319	0.7724					43	12	5	0	0	0	0.31356	1	15638	15638		45.7	9.1934	1	42300000			39440	2322	28975	29208	38408	38408					0.01999542147086686
PRESLETENVL	11	Unmodified	_PRESLETENVL_					0	0	0		nc|ENSG00000101773|Q99708-3|RBBP8;ENSG00000101773|ENST00000327155|RBBP8;nc|ENSG00000101773|Q99708-2|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	MULTI-MATCH	A375_MHC_IP_R1	1		2	643.832974	1285.6514	-0.24843	-0.00015995	-0.1705	-0.00010977	-0.41893	-0.00026972	643.8328665420486	42.9	0.71296	42.9	42.587	43.3	0	0.0063065	-0.00011183	NaN	45.7	46	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29352000			39441	2322	28975	29208							0.01999542147086686
PRESLETENVL	11	Unmodified	_PRESLETENVL_					0	0	0		nc|ENSG00000101773|Q99708-3|RBBP8;ENSG00000101773|ENST00000327155|RBBP8;nc|ENSG00000101773|Q99708-2|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	643.832974	1285.6514	-0.64564	-0.00041568	-0.048416	-3.1172E-05	-0.69405	-0.00044685	643.8329795737641	42.115	0.66268	42.887	42.656	43.319	0.7724	-0.0063065	4.5369E-05	NaN	45.7	43	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42300000			39442	2322	28975	29208							0.01999542147086686
PRETDLLKLI	10	Unmodified	_PRETDLLKLI_					0	0	0			REV__nc|ENSG00000196562|Q8IWU5-2|SULF2	REV__nc|ENSG00000196562|Q8IWU5-2|SULF2	MULTI-SECPEP	A375_MHC_IP_R2	2	599.020263671875	2	599.363713	1196.71287	-0.33711	-0.00020205	-0.46364	-0.00027789	-0.80074	-0.00047994	599.363242136745	146.84	0.37041	146.86	146.73	147.1	0.019913					70	41	2	0	0	0	0.95034	1	57170	57170		0.40072	0.40072	1	161130	+		39443	22208	28976	29209	38409	38409					0.12238518637059315
PRETDLLKLI	10	Unmodified	_PRETDLLKLI_					0	0	0			REV__nc|ENSG00000196562|Q8IWU5-2|SULF2	REV__nc|ENSG00000196562|Q8IWU5-2|SULF2	MULTI-MATCH	A375_MHC_IP_R1	1		2	599.363713	1196.71287	-0.74226	-0.00044488	-0.31755	-0.00019033	-1.0598	-0.00063521	599.363337546039	146.96	0.30942	146.96	146.7	147.01	0	0.047888	0.00010927	NaN	0.40072	45	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138560	+		39444	22208	28976	29209							0.12238518637059315
PRGVKRQRRSS	11	Unmodified	_PRGVKRQRRSS_					0	0	0		ENSG00000081019|ENST00000261441|RSBN1;nc|ENSG00000081019|Q5VWQ0-4|RSBN1;RSBN1|p.S392Lfs*7|1|0.71|ENSG00000081019|chr1:113797566-113797566|A/-|frameshift_variant	ENSG00000081019|ENST00000261441|RSBN1	ENSG00000081019|ENST00000261441|RSBN1	MULTI-MSMS	A375_MHC_IP_R1	1	443.3326110839844	3	442.932359	1325.77525	-0.30259	-0.00013403	0.55735	0.00024687	0.25476	0.00011284	442.9325434576489	130.82	1.0187	130.82	130.11	131.13	0					48	19	3	0	0	0	0.73807	1	50137	50137		1.2148	0.80657	1	73431000			39445	1728	28977	29210	38410	38410					0.12539102548589653
PRGVKRQRRSS	11	Unmodified	_PRGVKRQRRSS_					0	0	0		ENSG00000081019|ENST00000261441|RSBN1;nc|ENSG00000081019|Q5VWQ0-4|RSBN1;RSBN1|p.S392Lfs*7|1|0.71|ENSG00000081019|chr1:113797566-113797566|A/-|frameshift_variant	ENSG00000081019|ENST00000261441|RSBN1	ENSG00000081019|ENST00000261441|RSBN1	MULTI-MSMS	A375_MHC_IP_R2	2	443.3329772949219	3	442.932359	1325.77525	-0.36484	-0.0001616	0.8646	0.00038296	0.49976	0.00022136	442.9326050073156	130.62	1.3177	130.83	130	131.31	0.2142					79	25	4	0	0	0	0.73807	1	51138	51138		1.2148	0.588	1	55009000			39446	1728	28977	29210	38411	38411					0.12539102548589653
PRIASNAGSIA	11	Unmodified	_PRIASNAGSIA_					0	0	0		ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000584583.1_1_17:37006387-37006753:-|nuORF	ENST00000584583.1_1_17:37006387-37006753:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	529.19287109375	2	528.793455	1055.57236	-1.4278	-0.00075503	0.0085325	4.5119E-06	-1.4193	-0.00075052	528.7934355731762	29.156	0.30192	29.855	29.73	30.032	0.69872					10	5	2	0	0	0	0.92392	1	10171	10171		17.443	2.1942	1	6007800			39447	3979	28978	29211	38412	38412					0.04679359703482078
PRKFLIFRYKR	11	Unmodified	_PRKFLIFRYKR_					0	0	0			REV__ENSG00000167470|ENST00000682408|MIDN	REV__ENSG00000167470|ENST00000682408|MIDN	MULTI-SECPEP	A375_MHC_IP_R1	1	507.9646301269531	3	508.6489	1522.92487	-0.61425	-0.00031244	1.9674	0.0010007	1.3531	0.00068826	508.98515235484484	84.543	0.1544	84.543	84.442	84.596	0					4	2	2	0	0	0	1.0015	1	30957	30957		0.40827	0.078994	1	871500	+		39448	20760	28979	29212	38413	38413					0.18432654838511553
PRKGTALSRNY	11	Unmodified	_PRKGTALSRNY_					0	0	0			REV__ENSG00000105464|ENST00000263269|GRIN2D	REV__ENSG00000105464|ENST00000263269|GRIN2D	MULTI-SECPEP	A375_MHC_IP_R2	2	420.9153747558594	3	421.570316	1261.68912	-0.40937	-0.00017258	-0.45751	-0.00019287	-0.86688	-0.00036545	421.57020537908033	23.454	0.3536	24.084	23.878	24.232	0.63015					11	6	3	0	0	0	0.99819	1	7574	7574		3.5927	3.5927	1	3982800	+		39449	17386	28980	29213	38414	38414					0.06874097923218869
PRKKHKQKL	9	Unmodified	_PRKKHKQKL_					0	0	0			REV__ENSG00000275023|ENST00000621332|MLLT6	REV__ENSG00000275023|ENST00000621332|MLLT6	MSMS	A375_MHC_IP_R2	2	388.3030700683594	3	388.255891	1161.74584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.949	1	29.648	29.148	30.148	0.69872								0	0	0	0.15486	1	10063	10063		4.897	0.36815	1		+		39450	22959	28981	29214	38415	38415					0.17144190270414583
PRKKLLLVV	9	Unmodified	_PRKKLLLVV_					0	0	0			REV__ENSG00000153721|ENST00000607772|CNKSR3	REV__ENSG00000153721|ENST00000607772|CNKSR3	MSMS	A375_MHC_IP_R2	2	533.4049682617188	2	533.378969	1064.74339	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148	1	148.02	147.52	148.52	0.018707								0	0	0	0.15486	1	57497	57497		0	0	1		+		39451	19846	28982	29215	38416	38416					0.21360341812760453
PRKPRLASSR	10	Unmodified	_PRKPRLASSR_					0	0	0			REV__nc|ENSG00000171634|Q12830-4|BPTF	REV__nc|ENSG00000171634|Q12830-4|BPTF	MULTI-MSMS	A375_MHC_IP_R2	2	584.7564697265625	2	584.357088	1166.69962	-0.50118	-0.00029287	-1.0458	-0.00061111	-1.547	-0.00090398	584.3563883881895	127.5	3.2405	127.76	126.6	129.84	0.26592					114	63	3	0	0	0	0.72078	1	50383	50383		2.9952	1.151	1	40328000	+		39452	21084	28983	29216	38417	38417					0.122941253683166
PRKPRLASSR	10	Unmodified	_PRKPRLASSR_					0	0	0			REV__nc|ENSG00000171634|Q12830-4|BPTF	REV__nc|ENSG00000171634|Q12830-4|BPTF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	584.357088	1166.69962	-0.057702	-3.3719E-05	-1.6065	-0.00093878	-1.6642	-0.00097249	584.3560585427153	127.95	2.1835	127.95	127.06	129.25	0	0.093219	-0.00048029	NaN	2.9952	69	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81379000	+		39453	21084	28983	29216							0.122941253683166
PRKPRLASSR	10	Unmodified	_PRKPRLASSR_					0	0	0			REV__nc|ENSG00000171634|Q12830-4|BPTF	REV__nc|ENSG00000171634|Q12830-4|BPTF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	584.357088	1166.69962	-0.50118	-0.00029287	-1.0458	-0.00061111	-1.547	-0.00090398	584.3563883881895	127.5	3.2405	127.76	126.6	129.84	0.26592	-0.093219	0.00017503	NaN	2.9952	114	63	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40328000	+		39454	21084	28983	29216							0.122941253683166
PRKRERCHK	9	Unmodified	_PRKRERCHK_					0	0	0			REV__ENSG00000165724|ENST00000298585|ZMYND19	REV__ENSG00000165724|ENST00000298585|ZMYND19	MULTI-SECPEP	A375_MHC_IP_R1	1	404.16595458984375	3	403.896369	1208.66728	-0.35216	-0.00014224	-0.71017	-0.00028683	-1.0623	-0.00042907	403.8960934250112	42.288	0.40479	42.288	42.082	42.487	0					14	6	3	0	0	0	0.79713	1	14589	14589		3.8763	3.8763	1	1176500	+		39455	20617	28984	29217	38418	38418					0.0712901469364624
PRKRERCHK	9	Unmodified	_PRKRERCHK_					0	0	0			REV__ENSG00000165724|ENST00000298585|ZMYND19	REV__ENSG00000165724|ENST00000298585|ZMYND19	MULTI-MATCH	A375_MHC_IP_R2	2		3	403.896369	1208.66728	-0.20277	-8.1897E-05	-1.5743	-0.00063585	-1.7771	-0.00071775	403.89571757988966	41.247	0.50614	42.022	41.794	42.3	0.77451	-0.13296	-0.00058333	NaN	3.8763	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1687000	+		39456	20617	28984	29217							0.0712901469364624
PRKRHRWRRVP	11	Unmodified	_PRKRHRWRRVP_					0	0	0		ENST00000460670.5_1_19:37096371-37096590:+|nuORF	ENST00000460670.5_1_19:37096371-37096590:+|nuORF	ENST00000460670.5_1_19:37096371-37096590:+|nuORF	MSMS	A375_MHC_IP_R1	1	772.8682250976562	2	772.468901	1542.92325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.54	1	143.54	143.04	144.04	0								0	0	0	0.1636	1	55063	55063		0	0	1				39457	12171	28985	29218	38419	38419					0.17350458593068652
PRKSSLLHR	9	Unmodified	_PRKSSLLHR_					0	0	0		ENST00000297792.9_1_6:18161585-18171663:+|nuORF	ENST00000297792.9_1_6:18161585-18171663:+|nuORF	ENST00000297792.9_1_6:18161585-18171663:+|nuORF	MSMS	A375_MHC_IP_R2	2	365.28875732421875	3	365.22448	1092.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.864	1	25.508	25.008	26.008	0.64368								0	0	0	0.15486	1	8240	8240		3.8763	1.3778	1				39458	10518	28986	29219	38420	38420					0.10899051448268438
PRKVHKIKA	9	Unmodified	_PRKVHKIKA_					0	0	0		ENSG00000148156|ENST00000374667|ACTL7B	ENSG00000148156|ENST00000374667|ACTL7B	ENSG00000148156|ENST00000374667|ACTL7B	MULTI-SECPEP	A375_MHC_IP_R1	1	359.92919921875	3	359.573221	1075.69783	0.12713	4.5712E-05	0.10988	3.951E-05	0.23701	8.5222E-05	359.57420710848885	25.079	0.3536	25.079	24.953	25.306	0					9	6	2	0	0	0	0.7911	1	7338	7338		7.609	4.8738	1	3205100			39459	5718	28987	29220	38421	38421					0.16301116350359734
PRKVLIIGGG	10	Unmodified	_PRKVLIIGGG_					0	0	0		ENSG00000116649|ENST00000376957|SRM	ENSG00000116649|ENST00000376957|SRM	ENSG00000116649|ENST00000376957|SRM	MULTI-MSMS	A375_MHC_IP_R1	1	505.7339172363281	2	505.329476	1008.6444	-0.72653	-0.00036714	0.338	0.0001708	-0.38853	-0.00019634	505.32969548233984	147.69	0.2636	147.69	147.6	147.87	0					32	21	2	0	0	0	0.72747	2	56411	56411;56423		0	0	1	284170			39460	3412	28988	29221	38422;38423	38422					0.14042318847873503
PRLCPHPLL	9	Unmodified	_PRLCPHPLL_					0	0	0		nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF	nc|ENSG00000135506|Q13438-4|OS9	nc|ENSG00000135506|Q13438-4|OS9	MULTI-MSMS	A375_MHC_IP_R2	2	523.7041015625	2	523.302404	1044.59026	-0.5621	-0.00029415	0.92482	0.00048396	0.36271	0.00018981	523.3026124213706	127.17	2.8882	127.44	127.01	129.89	0.26592					105	56	5	0	0	0	0.58047	1	49771	49771		15.847	2.3393	1	99503000			39461	4691	28989	29222	38424	38424					0.06974403424624143
PRLGHVFL	8	Unmodified	_PRLGHVFL_					0	0	0		ENST00000602421.5_1_1:39547131-39549904:+|nuORF	ENST00000602421.5_1_1:39547131-39549904:+|nuORF	ENST00000602421.5_1_1:39547131-39549904:+|nuORF	MSMS	A375_MHC_IP_R2	2	469.68206787109375	2	469.782162	937.549771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.9	1	142.93	142.43	143.43	0.030731								0	0	0	0.16876	1	55860	55860		2.8892	0	1				39462	13882	28990	29223	38425	38425					0.07849805096520868
PRLPEKVRVP	10	Unmodified	_PRLPEKVRVP_					0	0	0			REV__ENST00000258080.7_1_2:74756576-74756741:+|nuORF	REV__ENST00000258080.7_1_2:74756576-74756741:+|nuORF	MSMS	A375_MHC_IP_R2	2	595.8280639648438	2	595.87204	1189.72953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.44	1	112.18	111.68	112.68	0.73692								0	0	0	0.15531	1	42020	42020		3.5965	0.60125	1		+		39463	23166	28991	29224	38426	38426					0.14225064313654912
PRLPEPPPR	9	Unmodified	_PRLPEPPPR_					0	0	0			REV__ENST00000567020.6_2_16:2552545-2553103:+|nuORF	REV__ENST00000567020.6_2_16:2552545-2553103:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	353.9416198730469	3	353.541697	1057.60326	-0.56093	-0.00019831	0.072932	2.5785E-05	-0.488	-0.00017253	353.5417237926882	21.257	0.76035	21.876	21.575	22.336	0.61932					17	14	2	0	0	0	0.73363	1	6723	6723		10.8	0	1	1685100	+		39464	26246	28992	29225	38427	38427					0.07676557808349571
PRLPRSTT	8	Unmodified	_PRLPRSTT_					0	0	0		nc|ENSG00000123569|Q7Z2G1-1|H2BW1	nc|ENSG00000123569|Q7Z2G1-1|H2BW1	nc|ENSG00000123569|Q7Z2G1-1|H2BW1	MULTI-MSMS	A375_MHC_IP_R1	1	464.67218017578125	2	464.272158	926.529764	-0.51262	-0.000238	0.10161	4.7177E-05	-0.41101	-0.00019082	464.2721141927792	135.16	0.30562	135.16	135.03	135.34	0					8	5	2	0	0	0	0.7773	1	52143	52143		4.756	4.756	1	2070200			39465	14573	28993	29226	38428	38428					0.06356009365879345
PRLPTRGD	8	Unmodified	_PRLPTRGD_					0	0	0			REV__nc|ENSG00000168071|A6NC98-5|CCDC88B	REV__nc|ENSG00000168071|A6NC98-5|CCDC88B	MULTI-MSMS	A375_MHC_IP_R1	1	456.6564025878906	2	456.256508	910.498464	-0.26594	-0.00012133	0.15504	7.0739E-05	-0.11089	-5.0595E-05	456.25649921329904	119.32	1.9782	119.32	117.92	119.89	0					53	38	2	0	0	0	0.77675	1	44138	44138		6.7232	1.9672	1	18838000	+		39466	27345	28994	29227	38429	38429					0.039634363317986754
PRLPTRGD	8	Unmodified	_PRLPTRGD_					0	0	0			REV__nc|ENSG00000168071|A6NC98-5|CCDC88B	REV__nc|ENSG00000168071|A6NC98-5|CCDC88B	MULTI-MSMS	A375_MHC_IP_R2	2	456.6571960449219	2	456.256508	910.498464	-0.14924	-6.809E-05	-0.14546	-6.6369E-05	-0.2947	-0.00013446	456.25635809502984	118.34	1.2651	118.95	118.44	119.71	0.60909					41	24	2	0	0	0	0.77675	1	45141	45141		6.7232	0.51738	1	20017000	+		39467	27345	28994	29227	38430	38430					0.039634363317986754
PRLRNLVLSRS	11	Unmodified	_PRLRNLVLSRS_					0	0	0			REV__ENSG00000014164|ENST00000262577|ZC3H3	REV__ENSG00000014164|ENST00000262577|ZC3H3	MULTI-SECPEP	A375_MHC_IP_R1	1	655.7817993164062	2	655.904402	1309.79425	-0.8029	-0.00052663	0.37143	0.00024362	-0.43147	-0.000283	655.9043880125663	149.26	2.2828	149.26	147.72	150	0					243	79	5	0	0	0	0.99985	1	56887	56887		2.7352	1.5419	1	2016400	+		39468	16240	28995	29228	38431	38431					0.15174639119618405
PRLRNLVLSRS	11	Unmodified	_PRLRNLVLSRS_					0	0	0			REV__ENSG00000014164|ENST00000262577|ZC3H3	REV__ENSG00000014164|ENST00000262577|ZC3H3	MULTI-SECPEP	A375_MHC_IP_R2	2	655.7818603515625	2	655.904402	1309.79425	-0.6838	-0.00044851	0.27463	0.00018013	-0.40917	-0.00026837	655.9043966971425	149.31	2.2454	149.33	147.77	150.01	0.018265					270	86	4	0	0	0	0.99985	1	58011	58011		2.7352	1.5419	1	1963400	+		39469	16240	28995	29228	38432	38432					0.15174639119618405
PRLVRNKLP	9	Unmodified	_PRLVRNKLP_					0	0	0			REV__ENST00000264657.9_1_17:40465456-40465696:-|nuORF	REV__ENST00000264657.9_1_17:40465456-40465696:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	364.9232177734375	3	364.904859	1091.69275	0.00056625	2.0663E-07	0.070718	2.5805E-05	0.071284	2.6012E-05	364.90489878547214	32.167	0.70911	32.904	32.504	33.213	0.73691					35	13	3	0	0	0	0.7235	1	11413	11413		4.897	0.70751	1	9314600	+		39470	23240	28996	29229	38433	38433					0.15056812487728166
PRNHTAKKIQ	10	Unmodified	_PRNHTAKKIQ_					0	0	0			REV__nc|ENSG00000152778|Q13325-2|IFIT5	REV__nc|ENSG00000152778|Q13325-2|IFIT5	MULTI-MSMS	A375_MHC_IP_R1	1	597.2487182617188	2	596.849096	1191.68364	-0.63566	-0.00037939	0.097078	5.7941E-05	-0.53858	-0.00032145	596.8491140812764	131.26	1.2147	131.26	130.72	131.93	0					32	23	2	0	0	0	0.71944	1	50610	50610		3.5965	0	1	8062400	+		39471	19816	28997	29230	38434	38434					0.09546419131402217
PRPHASKHRRR	11	Unmodified	_PRPHASKHRRR_					0	0	0		ENST00000575334.5_3_16:4466638-4470487:-|nuORF;ENST00000573165.1_2_16:4466638-4475523:-|nuORF	ENST00000575334.5_3_16:4466638-4470487:-|nuORF	ENST00000575334.5_3_16:4466638-4470487:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	700.329833984375	2	699.408509	1396.80247	-0.5147	-0.00035999	0.23875	0.00016699	-0.27595	-0.000193	699.4083297436736	148.79	2.5388	148.81	147.47	150.01	0.018707					179	113	4	0	0	0	0.73647	1	57923	57923		2.7352	2.7352	1	763050			39472	13625	28998	29231	38435	38435					0.11993630879601369
PRPPPARSP	9	Unmodified	_PRPPPARSP_					0	0	0			REV__ENST00000344450.9_1_6:292156-292477:+|nuORF	REV__ENST00000344450.9_1_6:292156-292477:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	488.1799621582031	2	487.780151	973.545748	-0.59625	-0.00029084	0.14544	7.0941E-05	-0.45081	-0.0002199	487.78007902625683	27.799	0.25198	28.477	28.301	28.553	0.67857					7	4	2	0	0	0	0.24324	1	9570	9570		53.833	2.203	1	3400800	+		39473	23760	28999	29232	38436	38436					0.05791715602799741
PRPPPARSP	9	Unmodified	_PRPPPARSP_					0	0	0			REV__ENST00000344450.9_1_6:292156-292477:+|nuORF	REV__ENST00000344450.9_1_6:292156-292477:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	487.780151	973.545748	-0.16322	-7.9614E-05	-0.49418	-0.00024105	-0.65739	-0.00032066	487.77983075540675	28.579	0.25347	28.579	28.39	28.643	0	0.050645	-0.00015881	NaN	53.833	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2739100	+		39474	23760	28999	29232							0.05791715602799741
PRPPPRTVP	9	Unmodified	_PRPPPRTVP_					0	0	0		ENST00000512163.5_1_5:162864650-162864752:+|nuORF	ENST00000512163.5_1_5:162864650-162864752:+|nuORF	ENST00000512163.5_1_5:162864650-162864752:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	508.70001220703125	2	508.803626	1015.5927	-0.61801	-0.00031445	-2.6487	-0.0013477	-3.2668	-0.0016621	508.8021359200728	46.457	0.50907	47.223	46.957	47.466	0.76519					15	9	2	0	0	0	0.76187	1	17392	17392		7.2892	6.6877	1	2695400			39475	12916	29000	29233	38437	38437					0.08552575153942144
PRQLFIEAP	9	Unmodified	_PRQLFIEAP_					0	0	0			REV__nc|ENSG00000176225|Q86VV8-3|RTTN;REV__nc|ENSG00000176225|Q86VV8-4|RTTN	REV__nc|ENSG00000176225|Q86VV8-4|RTTN	MULTI-MSMS	A375_MHC_IP_R1	1	357.6048278808594	3	357.537953	1069.59203	-0.062034	-2.218E-05	2.6459	0.000946	2.5838	0.00092382	357.5388912247077	33.099	0.55673	33.099	32.785	33.342	0					12	10	2	0	0	0	0.57432	1	10794	10794		16.149	0.90062	1	1619500	+		39476	27373;21396	29001	29234	38438	38438					0.06001735714221468
PRQPDPLL	8	Unmodified	_PRQPDPLL_					0	0	0			REV__ENST00000599904.2_1_20:45947364-45947934:+|nuORF	REV__ENST00000599904.2_1_20:45947364-45947934:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	467.9769592285156	2	468.269084	934.523616	-0.28479	-0.00013336	0.64739	0.00030315	0.3626	0.00016979	468.2692566748446	50.207	0.30709	50.207	50.049	50.357	0					7	5	2	0	0	0	0.50167	1	17721	17721		60.39	0	1	745570	+		39477	26498	29002	29235	38439	38439					0.05373491134378128
PRQQQQFS	8	Unmodified	_PRQQQQFS_					0	0	0		ENSG00000248098|ENST00000269980|BCKDHA;ENST00000538423.5_1_19:41903720-41916874:+|nuORF	ENSG00000248098|ENST00000269980|BCKDHA	ENSG00000248098|ENST00000269980|BCKDHA	MSMS	A375_MHC_IP_R2	2	509.6565856933594	2	509.756872	1017.49919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.627	1	43.4	42.9	43.9	0.7724								0	0	0	0.16876	1	15864	15864		18.135	2.3668	1				39478	9831	29003	29236	38440	38440					-0.00885769019134841
PRRKIKRIYM	10	Unmodified	_PRRKIKRIYM_					0	0	0		ENST00000318121.7_1_1:36230063-36230255:-|nuORF	ENST00000318121.7_1_1:36230063-36230255:-|nuORF	ENST00000318121.7_1_1:36230063-36230255:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	454.6833190917969	3	454.283453	1359.82853	-0.46233	-0.00021003	0.41923	0.00019045	-0.043092	-1.9576E-05	454.2833795266784	131.82	0.85638	131.82	131.38	132.23	0					32	16	3	0	0	0	0.72574	1	50812	50812		0.77653	0.32202	1	4024300			39479	10670	29004	29237	38441	38441					0.1630076400690541
PRRRHFRHRRH	11	Unmodified	_PRRRHFRHRRH_					0	0	0			REV__LCE1D|p.S81F|1|0.44|ENSG00000172155|chr1:152798036-152798036|C/T|missense_variant	REV__LCE1D|p.S81F|1|0.44|ENSG00000172155|chr1:152798036-152798036|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	403.2681884765625	4	403.486063	1609.91514	-0.61919	-0.00024984	0.71675	0.0002892	0.097556	3.9362E-05	403.4863344392037	32.483	0.30288	32.483	32.282	32.585	0					9	5	2	0	0	0	1.0015	1	10438	10438		0	0	1	1808200	+		39480	26920	29005	29238	38442	38442					0.1345832439633341
PRRRHFRHRRH	11	Unmodified	_PRRRHFRHRRH_					0	0	0			REV__LCE1D|p.S81F|1|0.44|ENSG00000172155|chr1:152798036-152798036|C/T|missense_variant	REV__LCE1D|p.S81F|1|0.44|ENSG00000172155|chr1:152798036-152798036|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	403.2804260253906	4	403.486063	1609.91514	-0.34554	-0.00013942	0.69454	0.00028024	0.34901	0.00014082	403.4862755405151	33.728	0.30039	33.728	33.547	33.848	0					8	5	2	0	0	0	1.0015	1	11075	11075		0	0	1	912640	+		39481	26920	29005	29238	38443	38443					0.1345832439633341
PRRRRRREER	10	Unmodified	_PRRRRRREER_					0	0	0		ENST00000361198.9_1_10:103874266-103874668:-|nuORF	ENST00000361198.9_1_10:103874266-103874668:-|nuORF	ENST00000361198.9_1_10:103874266-103874668:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	490.3612365722656	3	489.62604	1465.85629	-0.61232	-0.00029981	1.5497	0.00075878	0.93738	0.00045897	489.6265568405568	138	0.4102	138	137.84	138.25	0					11	7	2	0	0	0	0.95064	1	53120	53120		0.12286	0	1	1210200			39482	11038	29006	29239	38444	38444					0.14199803311362302
PRRRRRREER	10	Unmodified	_PRRRRRREER_					0	0	0		ENST00000361198.9_1_10:103874266-103874668:-|nuORF	ENST00000361198.9_1_10:103874266-103874668:-|nuORF	ENST00000361198.9_1_10:103874266-103874668:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	490.02606201171875	3	489.62604	1465.85629	-0.36585	-0.00017913	0.82363	0.00040327	0.45778	0.00022414	489.6263024743565	137.97	0.45549	138.06	137.91	138.37	0.083969					10	8	2	0	0	0	0.7272	1	54143	54143		0.12286	0	1	1333800			39483	11038	29006	29239	38445	38445					0.14199803311362302
PRRRRRRPSFF	11	Unmodified	_PRRRRRRPSFF_					0	0	0		ENST00000469704.1_1_20:17934783-17949290:-|nuORF	ENST00000469704.1_1_20:17934783-17949290:-|nuORF	ENST00000469704.1_1_20:17934783-17949290:-|nuORF	MSMS	A375_MHC_IP_R1	1	765.9513549804688	2	765.953084	1529.89161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.8	1	86.8	86.3	87.3	0								0	0	0	0.16353	1	31837	31837		0.35063	0	1				39484	12326	29007	29240	38446	38446					0.14786465839142693
PRRRRRWQRRP	11	Unmodified	_PRRRRRWQRRP_					0	0	0			REV__ENST00000295206.6_1_2:119600812-119604160:-|nuORF	REV__ENST00000295206.6_1_2:119600812-119604160:-|nuORF	MSMS	A375_MHC_IP_R1	1	810.5841064453125	2	810.488156	1618.96176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.36	1	129.36	128.86	129.86	0								0	0	0	0.1636	1	49755	49755		0	0	1		+		39485	23379	29008	29241	38447	38447					0.17703764227621832
PRRWRRRLPLL	11	Unmodified	_PRRWRRRLPLL_					0	0	0			REV__ENST00000418337.6_2_7:151292537-151329253:-|nuORF	REV__ENST00000418337.6_2_7:151292537-151329253:-|nuORF	MSMS	A375_MHC_IP_R1	1	760.0042114257812	2	759.983853	1517.95315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.38	1	121.38	120.88	121.88	0								0	0	0	0.1636	1	45068	45068		0	0	1		+		39486	24553	29009	29242	38448	38448					0.21489397538471167
PRTKRKLVRRH	11	Unmodified	_PRTKRKLVRRH_					0	0	0		ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	MSMS	A375_MHC_IP_R2	2	724.2564697265625	2	723.96566	1445.91677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.1	1	119.64	119.14	120.14	0.5321								0	0	0	0.16258	1	45329	45329		5.2969	2.3016	1				39487	9988	29010	29243	38449	38449					0.2116452064171881
PRTTFHHQI	9	Unmodified	_PRTTFHHQI_					0	0	0		ENST00000485303.5_1_3:110852670-110852778:+|nuORF	ENST00000485303.5_1_3:110852670-110852778:+|nuORF	ENST00000485303.5_1_3:110852670-110852778:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	379.9486083984375	3	379.536835	1135.58868	0.17421	6.6119E-05	0.64312	0.00024409	0.81733	0.00031021	379.87149368520676	19.406	0.25282	19.406	19.268	19.521	0					6	4	2	0	0	0	0.71071	1	4719	4719		14.405	0.79051	1	2026400			39488	12575	29011	29244	38450	38450					0.026304856602337168
PRTWSPKPCW	10	Unmodified	_PRTWSPKPCW_					0	0	0			REV__ENST00000367657.7_1_1:177030274-177030352:-|nuORF	REV__ENST00000367657.7_1_1:177030274-177030352:-|nuORF	MSMS	A375_MHC_IP_R1	1	419.7153015136719	3	419.878092	1256.61245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.069	1	47.069	46.569	47.569	0								0	0	0	0.15372	1	16544	16544		7.9454	5.1021	1		+		39489	23978	29012	29245	38451	38451					-0.005594168976131186
PRVALPPTW	9	Unmodified	_PRVALPPTW_					0	0	0		ENST00000434027.2_1_5:98105142-98106079:+|nuORF	ENST00000434027.2_1_5:98105142-98106079:+|nuORF	ENST00000434027.2_1_5:98105142-98106079:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	518.6953125	2	518.800552	1035.58655	-0.80185	-0.000416	0.77154	0.00040027	-0.030318	-1.5729E-05	518.8009677087024	135	0.61037	135	134.73	135.34	0					18	11	2	0	0	0	0.72985	1	52130	52130		4.3292	1.7518	1	1604100			39490	11897	29013	29246	38452	38452					0.07018056922402138
PRVIALENPRT	11	Unmodified	_PRVIALENPRT_					0	0	0		nc|ENSG00000147724|Q49AJ0-3|FAM135B;nc|ENSG00000147724|Q49AJ0-4|FAM135B;nc|ENSG00000147724|Q49AJ0-2|FAM135B;ENST00000482951.6_1_8:139144838-139379577:-|nuORF;ENSG00000147724|ENST00000395297|FAM135B	nc|ENSG00000147724|Q49AJ0-3|FAM135B	nc|ENSG00000147724|Q49AJ0-3|FAM135B	MULTI-MSMS	A375_MHC_IP_R1	1	634.5946044921875	2	633.369861	1264.72517	-1.0116	-0.00064069	-1.2687	-0.00080353	-2.2802	-0.0014442	633.8713302966205	143.15	1.4483	143.15	142.54	143.98	0					41	28	3	0	0	0	0.73658	1	54869	54869		2.9952	1.3426	1	1624700			39491	5703	29014	29247	38453	38453					0.1033955510006308
PRVPPSRS	8	Unmodified	_PRVPPSRS_					0	0	0		SRPX|p.L23P|1|0.31|ENSG00000101955|chrX:38220725-38220725|A/G|missense_variant	SRPX|p.L23P|1|0.31|ENSG00000101955|chrX:38220725-38220725|A/G|missense_variant	SRPX|p.L23P|1|0.31|ENSG00000101955|chrX:38220725-38220725|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	448.6590881347656	2	448.259051	894.503549	-0.28179	-0.00012632	0.55684	0.00024961	0.27504	0.00012329	448.2591976183269	126.26	2.2779	126.56	126.12	128.4	0.2951					93	44	5	0	0	0	0.77741	1	49604	49604		4.3292	2.0265	1	304530000			39492	29246	29015	29248	38454	38454					0.05207740194430244
PRWRRRWFVLK	11	Unmodified	_PRWRRRWFVLK_					0	0	0		nc|ENSG00000142675|Q969H4|CNKSR1;ENSG00000142675|ENST00000361530|CNKSR1	nc|ENSG00000142675|Q969H4|CNKSR1	nc|ENSG00000142675|Q969H4|CNKSR1	MSMS	A375_MHC_IP_R1	1	800.346923828125	2	800.478403	1598.94225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.1	1	125.1	124.6	125.6	0								0	0	0	0.16354	1	47421	47421		0.30703	0	1				39493	5325	29016	29249	38455	38455					0.16673995164137523
PRYCCWGCGSL	11	Unmodified	_PRYCCWGCGSL_					0	0	0		ENSG00000233198|ENST00000445101|RNF224	ENSG00000233198|ENST00000445101|RNF224	ENSG00000233198|ENST00000445101|RNF224	MSMS	A375_MHC_IP_R2	2	622.7146606445312	2	622.754104	1243.49365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.317	1	97.067	96.567	97.567	0.75045								0	0	0	0.16108	1	36572	36572		13.042	2.9685	1				39494	9733	29017	29250	38456	38456					-0.1183527518912797
PRYHEVHY	8	Unmodified	_PRYHEVHY_					0	0	0		nc|ENSG00000130305|Q96P11-5|NSUN5;nc|ENSG00000130305|Q96P11|NSUN5;ENSG00000130305|ENST00000438747|NSUN5;nc|ENSG00000130305|Q96P11-4|NSUN5	nc|ENSG00000130305|Q96P11-5|NSUN5	nc|ENSG00000130305|Q96P11-5|NSUN5	MULTI-SECPEP	A375_MHC_IP_R2	2	368.2764587402344	3	367.513919	1099.51993	-0.15738	-5.7841E-05	0.18636	6.849E-05	0.028976	1.0649E-05	367.8486756956169	20.299	0.25557	20.909	20.803	21.059	0.61029					6	4	2	0	0	0	0.972	1	6309	6309		8.7454	2.0222	1	418910			39495	4234	29018	29251	38457	38457					-0.025851786394923693
PSAAAPCSIL	10	Unmodified	_PSAAAPCSIL_					0	0	0			REV__ENST00000421767.1_1_7:65841945-65842656:-|nuORF	REV__ENST00000421767.1_1_7:65841945-65842656:-|nuORF	MSMS	A375_MHC_IP_R2	2	465.1581726074219	2	465.241678	928.468803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.424	1	28.102	27.602	28.602	0.67857								0	0	0	0.14483	1	9365	9365		27.629	6.0918	1		+		39496	24595	29019	29252	38458	38458					0.001707362714341798
PSAEGGEEVL	10	Unmodified	_PSAEGGEEVL_					0	0	0		nc|ENSG00000170289|Q9NQW8-2|CNGB3;ENSG00000170289|ENST00000320005|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	MULTI-SECPEP	A375_MHC_IP_R2	2	494.6824645996094	2	494.235104	986.455655	-0.51491	-0.00025449	0.90387	0.00044672	0.38896	0.00019224	494.23556722229677	30.802	0.65582	31.521	31.216	31.872	0.71857					26	12	3	0	0	0	0.57563	1	10995	10995		25.399	1.3787	1	7960400			39497	7489	29020	29253	38459	38459					-0.03811423306956385
PSAEGGEEVL	10	Unmodified	_PSAEGGEEVL_					0	0	0		nc|ENSG00000170289|Q9NQW8-2|CNGB3;ENSG00000170289|ENST00000320005|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	494.235104	986.455655	-0.32814	-0.00016218	1.1154	0.00055127	0.78726	0.00038909	494.2356212660889	31.475	0.65921	31.475	31.16	31.819	0	-0.022996	7.4319E-05	NaN	25.399	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8501600			39498	7489	29020	29253							-0.03811423306956385
PSAEQEQKL	9	Unmodified	_PSAEQEQKL_					0	0	0			REV__nc|ENSG00000104728|O15013-7|ARHGEF10	REV__nc|ENSG00000104728|O15013-7|ARHGEF10	MULTI-MSMS	A375_MHC_IP_R1	1	516.2341918945312	2	515.264196	1028.51384	-0.56213	-0.00028965	0.71695	0.00036942	0.15481	7.977E-05	515.2647709940799	59.067	1.9823	59.067	58.075	60.057	0					70	38	3	0	0	0	0.63811	1	21217	21217		12.532	0	1	11324000	+		39499	17333	29021	29254	38460	38460					0.0007225833833217621
PSCCGCHC	8	Unmodified	_PSCCGCHC_					0	0	0		ENST00000585421.5_1_17:76850723-76850948:-|nuORF	ENST00000585421.5_1_17:76850723-76850948:-|nuORF	ENST00000585421.5_1_17:76850723-76850948:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	809.62060546875	1	809.219747	808.21247	-0.68568	-0.00055486	0.92184	0.00074597	0.23616	0.00019111	809.2205969792261	138.62	1.7132	138.7	138.06	139.78	0.083969					54	33	2	0	0	0	0.972	1	54213	54213		0	0	1	1250600			39500	13716	29022	29255	38461	38461					-0.19930729100485678
PSCCGCHC	8	Unmodified	_PSCCGCHC_					0	0	0		ENST00000585421.5_1_17:76850723-76850948:-|nuORF	ENST00000585421.5_1_17:76850723-76850948:-|nuORF	ENST00000585421.5_1_17:76850723-76850948:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	809.219747	808.21247	-0.73379	-0.0005938	1.4259	0.0011539	0.69212	0.00056008	809.2207627922925	138.69	1.6206	138.69	138.05	139.67	0	-0.0024286	0.00019692	NaN	0	57	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1359000			39501	13716	29022	29255							-0.19930729100485678
PSCFLFRGPSG	11	Unmodified	_PSCFLFRGPSG_					0	0	0			REV__ENST00000377516.6_1_1:7903664-7903865:-|nuORF	REV__ENST00000377516.6_1_1:7903664-7903865:-|nuORF	MSMS	A375_MHC_IP_R2	2	584.2041625976562	2	584.284408	1166.55426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.56	1	125.85	125.35	126.35	0.2951								0	0	0	0.15183	1	49009	49009		19.362	1.2156	1		+		39502	24161	29023	29256	38462	38462					-0.02235098542905689
PSDHLLSTL	9	Unmodified	_PSDHLLSTL_					0	0	0		MEFV|p.E112Rfs*7|1|0.26|ENSG00000103313|chr16:3254734-3254734|C/-|frameshift_variant;nc|ENSG00000103313|O15553-3|MEFV;nc|ENSG00000103313|O15553-1|MEFV;ENSG00000103313|ENST00000219596|MEFV	MEFV|p.E112Rfs*7|1|0.26|ENSG00000103313|chr16:3254734-3254734|C/-|frameshift_variant	MEFV|p.E112Rfs*7|1|0.26|ENSG00000103313|chr16:3254734-3254734|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	492.47760009765625	2	491.763832	981.513111	-0.78055	-0.00038385	0.6132	0.00030155	-0.16736	-8.23E-05	491.76398651810536	49.8	0.25683	50.554	50.445	50.702	0.75406					6	4	2	0	0	0	0.71541	1	18679	18679		11.64	4.3511	1	1266800			39503	2442	29024	29257	38463	38463					0.02161463689287757
PSDLEMLAIDG	11	Unmodified	_PSDLEMLAIDG_					0	0	0			REV__ENST00000476276.5_1_16:2890776-2891361:-|nuORF	REV__ENST00000476276.5_1_16:2890776-2891361:-|nuORF	MSMS	A375_MHC_IP_R1	1	387.4452209472656	3	387.52164	1159.54309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.727	1	36.727	36.227	37.227	0								0	0	0	0.16249	1	12316	12316		2.6312	0.19645	1		+		39504	25181	29025	29258	38464	38464					-0.03029965427708703
PSDLTVGQFY	10	Unmodified	_PSDLTVGQFY_					0	0	0		ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000170296|ENST00000302386|GABARAP;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1	ENSG00000139112|ENST00000266458|GABARAPL1	ENSG00000139112|ENST00000266458|GABARAPL1	MULTI-SECPEP	A375_MHC_IP_R1	1	564.1749267578125	2	563.774396	1125.53424	-0.43336	-0.00024431	1.3457	0.00075868	0.91235	0.00051436	563.774750464277	96.008	0.71107	96.008	95.716	96.427	0					31	13	3	0	0	0	0.76274	1	35273	35273		36.506	14.969	1	1851000			39505	5047	29026	29259	38465	38465					-0.023505710018298487
PSDLTVGQFY	10	Unmodified	_PSDLTVGQFY_					0	0	0		ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000170296|ENST00000302386|GABARAP;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1	ENSG00000139112|ENST00000266458|GABARAPL1	ENSG00000139112|ENST00000266458|GABARAPL1	MULTI-MSMS	A375_MHC_IP_R2	2	564.3976440429688	2	563.774396	1125.53424	-0.31944	-0.00018009	0.48326	0.00027245	0.16383	9.2361E-05	563.7745713255587	95.436	0.76581	96.186	95.836	96.602	0.75045					29	14	3	0	0	0	0.2347	1	36187	36187		45.7	25.246	1	2451300			39506	5047	29026	29259	38466	38466					-0.023505710018298487
PSDPKQYRY	9	Unmodified	_PSDPKQYRY_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC;ENST00000491410.1_1_1:52305873-52344287:-|nuORF	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	A375_MHC_IP_R1	1	577.6852416992188	2	577.285463	1152.55637	-0.30689	-0.00017716	-0.74803	-0.00043183	-1.0549	-0.00060899	577.2855290981129	19.546	0.45768	19.546	19.318	19.776	0					14	8	3	0	0	0	0.0015806	1	4887	4887		148.27	93.495	1	8182800			39507	1676	29027	29260	38467	38467					-0.013803465334149223
PSDPKQYRY	9	Unmodified	_PSDPKQYRY_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC;ENST00000491410.1_1_1:52305873-52344287:-|nuORF	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-SECPEP	A375_MHC_IP_R1	1	384.9720153808594	3	385.192734	1152.55637	0.14035	5.4062E-05	0.14794	5.6984E-05	0.28829	0.00011105	385.1927951180838	19.542	0.55892	19.542	19.268	19.827	0					33	9	5	0	0	0	0.061442	1	4913	4913		82.529	67.281	1	151460000			39508	1676	29027	29260	38468	38468					-0.013803465334149223
PSDPKQYRY	9	Unmodified	_PSDPKQYRY_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC;ENST00000491410.1_1_1:52305873-52344287:-|nuORF	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-SECPEP	A375_MHC_IP_R1	1	385.5926513671875	3	385.192734	1152.55637	0.57208	0.00022036	-0.52125	-0.00020078	0.050834	1.9581E-05	385.1925297256682	21.834	0.6102	21.834	21.606	22.216	0					23	11	3	0	0	0	0.13208	1	5797	5797		57.722	41.156	1	8861100			39509	1676	29027	29260	38469	38469					-0.013803465334149223
PSDPKQYRY	9	Unmodified	_PSDPKQYRY_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC;ENST00000491410.1_1_1:52305873-52344287:-|nuORF	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	A375_MHC_IP_R2	2	385.29254150390625	3	385.192734	1152.55637	-0.45831	-0.00017654	0.1593	6.1362E-05	-0.299	-0.00011517	385.1927668378788	21.386	0.50818	22.005	21.777	22.285	0.61932					19	9	3	0	0	0	0.077132	1	6747	6747		49.554	34.306	1	8445000			39510	1676	29027	29260	38470	38470					-0.013803465334149223
PSDPKQYRY	9	Unmodified	_PSDPKQYRY_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC;ENST00000491410.1_1_1:52305873-52344287:-|nuORF	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-SECPEP	A375_MHC_IP_R2	2	384.9715576171875	3	385.192734	1152.55637	-0.38857	-0.00014968	0.41012	0.00015797	0.021544	8.2986E-06	385.19288681905226	18.955	0.39523	19.559	19.438	19.833	0.60308					26	8	5	0	0	0	0.16595	1	5730	5730		53.404	42.505	1	133850000			39511	1676	29027	29260	38471	38471					-0.013803465334149223
PSDPRYHEVHY	11	Unmodified	_PSDPRYHEVHY_					0	0	0		nc|ENSG00000130305|Q96P11-5|NSUN5;nc|ENSG00000130305|Q96P11|NSUN5;ENSG00000130305|ENST00000438747|NSUN5;nc|ENSG00000130305|Q96P11-4|NSUN5	nc|ENSG00000130305|Q96P11-5|NSUN5	nc|ENSG00000130305|Q96P11-5|NSUN5	MULTI-SECPEP	A375_MHC_IP_R2	2	467.6169738769531	3	467.217831	1398.63166	-0.96148	-0.00044922	-0.75629	-0.00035335	-1.7178	-0.00080257	467.2174688197774	20.36	0.81263	20.97	20.449	21.262	0.61029					23	15	3	0	0	0	0.43711	1	6325	6325		44.207	29.369	1	2177800			39512	4234	29028	29261	38472	38472					-0.05170789073008564
PSDPVQPQY	9	Unmodified	_PSDPVQPQY_					0	0	0		nc|ENSG00000146828|Q9BXP2-3|SLC12A9;nc|ENSG00000146828|Q9BXP2-4|SLC12A9;ENSG00000146828|ENST00000354161|SLC12A9;nc|ENSG00000146828|Q9BXP2-2|SLC12A9	nc|ENSG00000146828|Q9BXP2-3|SLC12A9	nc|ENSG00000146828|Q9BXP2-3|SLC12A9	MULTI-MSMS	A375_MHC_IP_R2	2	516.1454467773438	2	515.745639	1029.47673	-0.66958	-0.00034533	-0.030961	-1.5968E-05	-0.70054	-0.0003613	515.7457062044825	42.973	0.65772	43.745	43.472	44.13	0.7724					24	12	3	0	0	0	0.054426	1	16009	16009		62.573	18.8	1	6284200			39513	5638	29029	29262	38473	38473					-0.03683413207409103
PSEAGLESPQP	11	Unmodified	_PSEAGLESPQP_					0	0	0			REV__nc|ENSG00000008710|P98161-2|PKD1	REV__nc|ENSG00000008710|P98161-2|PKD1	MULTI-SECPEP	A375_MHC_IP_R1	1	556.6668701171875	2	556.266936	1110.51932	-0.29629	-0.00016482	2.5526	0.0014199	2.2563	0.0012551	556.2669879601307	44.37	0.51335	44.37	44.061	44.575	0					22	9	3	0	0	0	0.73984	1	15509	15509		29.841	1.3461	1	3544400	+		39514	16177	29030	29263	38474	38474					-0.03152062869844485
PSEAILHFT	9	Unmodified	_PSEAILHFT_					0	0	0			REV__ENSG00000145555|ENST00000513610|MYO10	REV__ENSG00000145555|ENST00000513610|MYO10	MULTI-SECPEP	A375_MHC_IP_R1	1	507.1763610839844	2	507.766374	1013.5182	-0.44942	-0.0002282	-0.39258	-0.00019934	-0.842	-0.00042754	507.7661359243709	52.47	0.71091	52.47	52.136	52.847	0					36	13	4	0	0	0	0.3213	1	18744	18744		30.637	3.0077	1	22725000	+		39515	19480	29031	29264	38475	38475					0.01197767551900597
PSEAILHFT	9	Unmodified	_PSEAILHFT_					0	0	0			REV__ENSG00000145555|ENST00000513610|MYO10	REV__ENSG00000145555|ENST00000513610|MYO10	MULTI-SECPEP	A375_MHC_IP_R2	2	507.17626953125	2	507.766374	1013.5182	-1.0105	-0.00051308	-0.11557	-5.8683E-05	-1.126	-0.00057176	507.7662761578515	51.746	0.71329	52.499	52.169	52.882	0.75225					35	13	4	0	0	0	0.39388	1	19525	19525		32.305	3.8186	1	18356000	+		39516	19480	29031	29264	38476	38476					0.01197767551900597
PSEEYHIAW	9	Unmodified	_PSEEYHIAW_					0	0	0			REV__ENSG00000187105|ENST00000553558|HEATR4	REV__ENSG00000187105|ENST00000553558|HEATR4	MULTI-SECPEP	A375_MHC_IP_R1	1	566.6929321289062	2	566.258914	1130.50327	-0.58658	-0.00033216	-2.2406	-0.0012688	-2.8272	-0.0016009	566.2562840903861	28.002	0.35302	28.002	27.735	28.088	0					8	6	2	0	0	0	0.71541	1	8599	8599		7.2892	0	1	906040	+		39517	22008	29032	29265	38477	38477					-0.0567572431609733
PSENSDLFY	9	Unmodified	_PSENSDLFY_					0	0	0		nc|ENSG00000116133|Q15392-2|DHCR24;ENSG00000116133|ENST00000371269|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1206665039062	2	536.235104	1070.45566	-0.78261	-0.00041966	0.31869	0.00017089	-0.46392	-0.00024877	536.235146759958	76.532	0.86296	76.532	76.067	76.93	0					38	16	3	0	0	0	0.11887	1	27901	27901		78.728	42.684	1	4846400			39518	3373	29033	29266	38478	38478					-0.07675423306955054
PSENSDLFY	9	Unmodified	_PSENSDLFY_					0	0	0		nc|ENSG00000116133|Q15392-2|DHCR24;ENSG00000116133|ENST00000371269|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	MULTI-SECPEP	A375_MHC_IP_R2	2	536.0629272460938	2	536.235104	1070.45566	-0.85718	-0.00045965	0.37619	0.00020172	-0.48099	-0.00025792	536.2349988708633	75.841	0.66048	76.581	76.282	76.943	0.74052					31	12	3	0	0	0	0.076731	1	28780	28780		78.728	42.684	1	5127700			39519	3373	29033	29266	38479	38479					-0.07675423306955054
PSEPSEFGT	9	Unmodified	_PSEPSEFGT_					0	0	0		FOXD4L5|p.D82E|1|0.08|ENSG00000204779|chr9:65284132-65284132|G/T|missense_variant	FOXD4L5|p.D82E|1|0.08|ENSG00000204779|chr9:65284132-65284132|G/T|missense_variant	FOXD4L5|p.D82E|1|0.08|ENSG00000204779|chr9:65284132-65284132|G/T|missense_variant	MSMS	A375_MHC_IP_R1	1	475.660400390625	2	475.708722	949.402892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.48	1	56.48	55.98	56.98	0								0	0	0	0.15486	1	20235	20235		12.532	0.29089	1				39520	14013	29034	29267	38480	38480					-0.07383381369743347
PSESGMWAS	9	Unmodified	_PSESGMWAS_					0	0	0			REV__ENST00000580498.5_1_17:57287412-57290261:+|nuORF	REV__ENST00000580498.5_1_17:57287412-57290261:+|nuORF	MSMS	A375_MHC_IP_R1	1	476.1415710449219	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.152	1	44.152	43.652	44.652	0								0	0	0	0.15486	1	15392	15392		7.2892	1.5288	1		+		39521	20759	29035	29268	38481	38481					-0.09679304039025283
PSESGMWAS	9	Unmodified	_PSESGMWAS_					0	0	0			REV__ENST00000580498.5_1_17:57287412-57290261:+|nuORF	REV__ENST00000580498.5_1_17:57287412-57290261:+|nuORF	MSMS	A375_MHC_IP_R2	2	476.1412658691406	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.264	1	44.036	43.536	44.536	0.7724								0	0	0	0.15486	1	16115	16115		6.7232	0.36906	1		+		39522	20759	29035	29268	38482	38482					-0.09679304039025283
PSEVPVDSHY	10	Unmodified	_PSEVPVDSHY_					0	0	0		ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	MULTI-MSMS	A375_MHC_IP_R1	1	565.6608276367188	2	565.261653	1128.50875	-0.36575	-0.00020675	0.56143	0.00031735	0.19568	0.00011061	565.261357074793	34.853	0.30497	34.853	34.759	35.064	0					8	5	2	0	0	0	0.10955	1	11567	11567		61.602	42.345	1	4093200			39523	4962	29036	29269	38483	38483					-0.05036045524275323
PSEVPVDSHY	10	Unmodified	_PSEVPVDSHY_					0	0	0		ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	MULTI-SECPEP	A375_MHC_IP_R2	2	565.6610717773438	2	565.261653	1128.50875	-0.77223	-0.00043651	0.98822	0.00055861	0.21599	0.00012209	565.2613659909989	34.236	0.30675	34.988	34.853	35.16	0.75225					11	5	3	0	0	0	0.088367	1	12362	12362		66.457	48.084	1	4740200			39524	4962	29036	29269	38484	38484					-0.05036045524275323
PSEVPVDSHYY	11	Unmodified	_PSEVPVDSHYY_					0	0	0		ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	MULTI-MSMS	A375_MHC_IP_R1	1	647.6954345703125	2	646.793318	1291.57208	0.022064	1.4271E-05	-0.25545	-0.00016522	-0.23339	-0.00015095	646.793129465557	48.458	0.50653	48.458	48.223	48.729	0					17	9	3	0	0	0	0.068878	1	17108	17108		75.761	56.399	1	4707200			39525	4962	29037	29270	38485	38485					-0.062041048070341276
PSEVPVDSHYY	11	Unmodified	_PSEVPVDSHYY_					0	0	0		ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	MULTI-MSMS	A375_MHC_IP_R2	2	647.1925048828125	2	646.793318	1291.57208	-0.55094	-0.00035634	-0.45363	-0.00029341	-1.0046	-0.00064975	646.7930312289408	47.83	0.65737	48.591	48.326	48.984	0.76128					25	12	3	0	0	0	8.1947E-15	1	17959	17959		187.3	129.57	1	5244200			39526	4962	29037	29270	38486	38486					-0.062041048070341276
PSEVSYLKP	9	Unmodified	_PSEVSYLKP_					0	0	0		ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENST00000581621.1_1_17:7476159-7481249:+|nuORF	ENST00000581621.1_1_17:7476159-7481249:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	511.6815185546875	2	510.274032	1018.53351	-1.0563	-0.00053902	1.0714	0.00054669	0.015033	7.6709E-06	510.27392630934935	61.041	1.3622	61.786	61.364	62.726	0.74503					109	26	6	0	0	0	0.22528	1	23252	23252		36.127	3.8215	1	109080000			39527	13685	29038	29271	38487	38487					0.024986343491036678
PSEYDTPLY	9	Unmodified	_PSEYDTPLY_					0	0	0		ENSG00000183576|ENST00000331768|SETD3;nc|ENSG00000183576|Q86TU7-3|SETD3;nc|ENSG00000183576|Q86TU7-2|SETD3	ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	MULTI-MSMS	A375_MHC_IP_R2	2	543.1448974609375	2	542.745305	1083.47606	-0.98373	-0.00053392	0.76576	0.00041561	-0.21797	-0.0001183	542.7457796199076	71.05	0.65871	71.785	71.605	72.264	0.73421					17	12	2	0	0	0	0.25276	1	26946	26946		34.102	12.356	1	3369500			39528	8505	29039	29272	38488	38488					-0.0623425264711841
PSFLKKNKK	9	Unmodified	_PSFLKKNKK_					0	0	0		nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	MULTI-SECPEP	A375_MHC_IP_R2	2	363.6286926269531	3	363.897481	1088.67061	-0.39636	-0.00014423	-0.076183	-2.7723E-05	-0.47254	-0.00017196	363.89742201877453	22.406	0.40897	23.025	22.795	23.204	0.61932					13	7	3	0	0	0	0.76187	1	7117	7117		4.5289	0.93237	1	4889100			39529	5758	29040	29273	38489	38489					0.12982588019326613
PSFLSVKHT	9	Unmodified	_PSFLSVKHT_					0	0	0		HERVE-int_dup201|chr12:9407305-9407906:+|15.573699867673136|0.4237072947775241|5.2|468.0|31|3|anti-sense	HERVE-int_dup201|chr12:9407305-9407906:+|15.573699867673136|0.4237072947775241|5.2|468.0|31|3|anti-sense	HERVE-int_dup201|chr12:9407305-9407906:+|15.573699867673136|0.4237072947775241|5.2|468.0|31|3|anti-sense	MULTI-MSMS	A375_MHC_IP_R1	1	508.68206787109375	2	508.282192	1014.54983	0.092838	4.7188E-05	-0.68708	-0.00034923	-0.59424	-0.00030204	508.28183139666334	69.568	0.70879	69.568	69.224	69.933	0					22	13	2	0	0	0	0.27064	1	25282	25282		32.786	11.039	1	6870900			39530	14110	29041	29274	38490	38490					0.04313760305853975
PSGEKSIQKQE	11	Unmodified	_PSGEKSIQKQE_					0	0	0		ITFG1|p.R529Q|1|0.4|ENSG00000129636|chr16:47161825-47161825|C/T|missense_variant	ITFG1|p.R529Q|1|0.4|ENSG00000129636|chr16:47161825-47161825|C/T|missense_variant	ITFG1|p.R529Q|1|0.4|ENSG00000129636|chr16:47161825-47161825|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	616.2196044921875	2	615.819867	1229.62518	-0.49602	-0.00030546	0.16609	0.00010228	-0.32993	-0.00020318	615.8198719400408	27.709	0.35343	27.709	27.533	27.887	0					11	6	2	0	0	0	0.46568	1	8484	8484		34.932	34.932	1	3524200			39531	14175	29042	29275	38491	38491					0.01955272975601474
PSGEKSIQKQE	11	Unmodified	_PSGEKSIQKQE_					0	0	0		ITFG1|p.R529Q|1|0.4|ENSG00000129636|chr16:47161825-47161825|C/T|missense_variant	ITFG1|p.R529Q|1|0.4|ENSG00000129636|chr16:47161825-47161825|C/T|missense_variant	ITFG1|p.R529Q|1|0.4|ENSG00000129636|chr16:47161825-47161825|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	615.819867	1229.62518	-0.49602	-0.00030546	0.16609	0.00010228	-0.32993	-0.00020318	615.8198719400408	27.709	0.35343	27.709	27.533	27.887	0	-0.053536	1.4082E-05	NaN	34.932	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3524200			39532	14175	29042	29275							0.01955272975601474
PSGEKSIQKQE	11	Unmodified	_PSGEKSIQKQE_					0	0	0		ITFG1|p.R529Q|1|0.4|ENSG00000129636|chr16:47161825-47161825|C/T|missense_variant	ITFG1|p.R529Q|1|0.4|ENSG00000129636|chr16:47161825-47161825|C/T|missense_variant	ITFG1|p.R529Q|1|0.4|ENSG00000129636|chr16:47161825-47161825|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	615.819867	1229.62518	-0.66429	-0.00040908	0.13197	8.1271E-05	-0.53232	-0.00032781	615.8198154093811	27.138	0.51125	27.816	27.536	28.047	0.67857	0.053536	-2.7939E-05	NaN	34.932	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2343300			39533	14175	29042	29275							0.01955272975601474
PSGHWSSPPEW	11	Unmodified	_PSGHWSSPPEW_					0	0	0			REV__ENST00000310924.6_1_17:77984337-77984529:-|nuORF	REV__ENST00000310924.6_1_17:77984337-77984529:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	632.992919921875	2	633.780544	1265.54654	-0.69923	-0.00044316	0.55648	0.00035269	-0.14275	-9.0473E-05	633.7806311208121	33.317	0.45767	33.317	33.09	33.547	0					16	8	2	0	0	0	0.99331	1	10866	10866		8.7454	2.0222	1	8537600	+		39534	23504	29043	29276	38492	38492					-0.07561534538785963
PSGNSLFKTV	10	Unmodified	_PSGNSLFKTV_					0	0	0		ENST00000494799.5_1_10:90751287-90770560:+|nuORF;ENST00000466081.5_1_10:90751224-90770411:+|nuORF;ENST00000371857.7_1_10:90751224-90770455:+|nuORF	ENST00000494799.5_1_10:90751287-90770560:+|nuORF	ENST00000494799.5_1_10:90751287-90770560:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	525.6845092773438	2	525.284931	1048.55531	-0.6156	-0.00032337	1.2425	0.00065268	0.62693	0.00032931	525.2847463184062	68.561	0.912	68.561	68.057	68.969	0					42	16	4	0	0	0	0.49514	1	24855	24855		28.495	4.4739	1	15983000			39535	11186	29044	29277	38493	38493					0.032974390976505674
PSGPDLNTHKI	11	Unmodified	_PSGPDLNTHKI_					0	0	0			REV__ENST00000596769.1_1_19:53510963-53514048:+|nuORF	REV__ENST00000596769.1_1_19:53510963-53514048:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	394.1395568847656	3	393.543655	1177.60914	-0.11806	-4.6464E-05	0.49334	0.00019415	0.37527	0.00014769	393.8783880032232	42.164	0.51035	42.936	42.656	43.167	0.7724					12	9	2	0	0	0	0.9574	1	15731	15731		8.2864	0	1	2187000	+		39536	26475	29045	29278	38494	38494					0.027436115293767216
PSHHLLPGA	9	Unmodified	_PSHHLLPGA_					0	0	0		ENST00000478553.1_1_20:4764702-4764837:-|nuORF	ENST00000478553.1_1_20:4764702-4764837:-|nuORF	ENST00000478553.1_1_20:4764702-4764837:-|nuORF	MSMS	A375_MHC_IP_R1	1	464.6919250488281	2	464.753601	927.49265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.43	1	110.43	109.93	110.93	0								0	0	0	0.15486	1	40491	40491		13.508	0.97634	1				39537	12465	29046	29279	38495	38495					0.026003378201380656
PSHIDLSIT	9	Unmodified	_PSHIDLSIT_					0	0	0			REV__ENST00000299427.10_2_11:6635383-6635536:-|nuORF	REV__ENST00000299427.10_2_11:6635383-6635536:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	492.47784423828125	2	491.763832	981.513111	-0.32888	-0.00016173	-1.2973	-0.00063799	-1.6262	-0.00079972	491.7629713362366	50.688	0.30581	50.688	50.408	50.713	0					6	5	2	0	0	0	0.76187	1	17859	17859		7.2892	0	1	999450	+		39538	23406	29047	29280	38496	38496					0.02161463689287757
PSHRPAPSI	9	Unmodified	_PSHRPAPSI_					0	0	0			REV__nc|ENSG00000078699|O43439-2|CBFA2T2	REV__nc|ENSG00000078699|O43439-2|CBFA2T2	MULTI-SECPEP	A375_MHC_IP_R2	2	481.1622009277344	2	481.264333	960.514114	-0.83329	-0.00040103	-0.49856	-0.00023994	-1.3318	-0.00064097	481.26410498650273	41.058	0.40666	41.833	41.641	42.047	0.77451					11	7	2	0	0	0	0.55359	1	15214	15214		28.487	8.0332	1	2313600	+		39539	16716	29048	29281	38497	38497					0.03227722848839676
PSINKQEWS	9	Unmodified	_PSINKQEWS_					0	0	0		ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	MULTI-SECPEP	A375_MHC_IP_R2	2	364.28509521484375	3	363.517218	1087.52982	-0.51156	-0.00018596	0.38557	0.00014016	-0.12599	-4.5801E-05	363.5174169121043	25.409	0.20328	26.053	25.924	26.128	0.64368					5	3	2	0	0	0	0.69507	1	8481	8481		13.615	4.6386	1	1159800			39540	6979	29049	29282	38498	38498					-0.010440354247748473
PSIRRKLIF	9	Unmodified	_PSIRRKLIF_					0	0	0		ENST00000310806.8_1_14:45693835-45693886:-|nuORF	ENST00000310806.8_1_14:45693835-45693886:-|nuORF	ENST00000310806.8_1_14:45693835-45693886:-|nuORF	MSMS	A375_MHC_IP_R1	1	565.366943359375	2	565.36385	1128.71315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.87	1	108.87	108.37	109.37	0								0	0	0	0.15486	1	39937	39937		2.0598	0	1				39541	10623	29050	29283	38499	38499					0.15393983147532708
PSIVLKEREE	10	Unmodified	_PSIVLKEREE_					0	0	0			REV__ENST00000475506.1_1_1:17354162-17371284:-|nuORF	REV__ENST00000475506.1_1_1:17354162-17371284:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	600.734130859375	2	600.335153	1198.65575	-0.48607	-0.00029181	-0.99438	-0.00059696	-1.4805	-0.00088877	600.3337955115087	129.1	2.2867	129.1	128.13	130.41	0					120	44	5	0	0	0	0.71466	1	49765	49765		5.7319	0.43497	1	96536000	+		39542	25167	29051	29284	38500	38500					0.0643705136067183
PSKIQLPEDE	10	Unmodified	_PSKIQLPEDE_					0	0	0		ENSG00000147123|ENST00000377811|NDUFB11;nc|ENSG00000147123|Q9NX14-2|NDUFB11	ENSG00000147123|ENST00000377811|NDUFB11	ENSG00000147123|ENST00000377811|NDUFB11	MULTI-SECPEP	A375_MHC_IP_R1	1	578.6979370117188	2	578.298236	1154.58192	-0.57262	-0.00033114	0.084428	4.8825E-05	-0.48819	-0.00028232	578.2982239587211	41.394	0.40657	41.394	41.164	41.571	0					18	7	3	0	0	0	0.020568	1	14289	14289		115.82	66.294	1	9210000			39543	5660	29052	29285	38501	38501					0.010810831983462776
PSKIQLPEDE	10	Unmodified	_PSKIQLPEDE_					0	0	0		ENSG00000147123|ENST00000377811|NDUFB11;nc|ENSG00000147123|Q9NX14-2|NDUFB11	ENSG00000147123|ENST00000377811|NDUFB11	ENSG00000147123|ENST00000377811|NDUFB11	MULTI-SECPEP	A375_MHC_IP_R2	2	578.6984252929688	2	578.298236	1154.58192	-0.37184	-0.00021503	0.32825	0.00018982	-0.043591	-2.5209E-05	578.2984400908766	40.74	0.35611	41.515	41.285	41.641	0.77451					18	6	3	0	0	0	0.018883	1	15065	15065		128.87	81.137	1	8244000			39544	5660	29052	29285	38502	38502					0.010810831983462776
PSKIRIEYL	9	Unmodified	_PSKIRIEYL_					0	0	0			REV__tr|U7T006|U7T006_FUSNURelE/StbEfamilyaddictionmoduletoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00843PE=4SV=1	REV__tr|U7T006|U7T006_FUSNURelE/StbEfamilyaddictionmoduletoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00843PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	373.945068359375	3	373.557125	1117.64954	-0.17833	-6.6616E-05	-1.1825	-0.00044174	-1.3608	-0.00050835	373.55623365107533	53.093	0.55821	53.844	53.538	54.097	0.75105					16	10	3	0	0	0	0.53943	1	20032	20032		17.863	4.3445	1	750170	+		39545	28661	29053	29286	38503	38503					0.09542577919796713
PSKKQPSL	8	Unmodified	_PSKKQPSL_					0	0	0			REV__ENST00000418170.5_1_22:35660034-35689641:+|nuORF	REV__ENST00000418170.5_1_22:35660034-35689641:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	443.1636657714844	2	442.763635	883.512717	-0.075215	-3.3302E-05	0.66604	0.0002949	0.59083	0.0002616	442.7637232172501	79.744	0.719	79.744	79.367	80.086	0					32	13	4	0	0	0	0.50167	1	29081	29081		60.39	6.814	1	4211000	+		39546	17068	29054	29287	38504	38504					0.06630088760084618
PSKKQPSL	8	Unmodified	_PSKKQPSL_					0	0	0			REV__ENST00000418170.5_1_22:35660034-35689641:+|nuORF	REV__ENST00000418170.5_1_22:35660034-35689641:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	443.16351318359375	2	442.763635	883.512717	-0.28363	-0.00012558	0.068802	3.0463E-05	-0.21483	-9.512E-05	442.76359557455004	78.817	0.76172	79.562	79.134	79.896	0.74474					29	14	3	0	0	0	0.50167	1	29885	29885		60.39	0	1	3598800	+		39547	17068	29054	29287	38505	38505					0.06630088760084618
PSKKVEHVFQA	11	Unmodified	_PSKKVEHVFQA_					0	0	0			REV__ENST00000535158.5_1_12:31227017-31242187:+|nuORF	REV__ENST00000535158.5_1_12:31227017-31242187:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	635.7991333007812	2	635.351137	1268.68772	-0.53764	-0.00034159	-0.14842	-9.4299E-05	-0.68606	-0.00043589	635.3507607731739	68.844	0.50642	68.844	68.666	69.173	0					14	9	2	0	0	0	0.59391	1	25021	25021		23.79	0	1	2509900	+		39548	16237	29055	29288	38506	38506					0.06412463834476512
PSKPDLTNVDW	11	Unmodified	_PSKPDLTNVDW_					0	0	0			REV__ENST00000335997.11_1_X:129200465-129200657:-|nuORF	REV__ENST00000335997.11_1_X:129200465-129200657:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	424.2908935546875	3	424.547065	1270.61937	-0.19777	-8.3964E-05	-0.52469	-0.00022276	-0.72247	-0.00030672	424.54711392509535	39.779	0.45737	40.554	40.269	40.727	0.77451					14	8	3	0	0	0	0.99332	1	14647	14647		4.4062	0	1	1872700	+		39549	23675	29056	29289	38507	38507					-0.005118255360457624
PSKRLPDLQP	10	Unmodified	_PSKRLPDLQP_					0	0	0			REV__nc|ENSG00000257103|Q8ND56-3|LSM14A	REV__nc|ENSG00000257103|Q8ND56-3|LSM14A	MULTI-SECPEP	A375_MHC_IP_R1	1	576.232421875	2	575.83258	1149.65061	-0.31751	-0.00018283	-0.18479	-0.00010641	-0.5023	-0.00028924	575.8324629926713	33.065	0.55673	33.065	32.785	33.342	0					32	10	4	0	0	0	0.55307	1	10706	10706		18.373	0	1	31007000	+		39550	22889	29057	29290	38508	38508					0.08176792288713841
PSKRRRRVRLL	11	Unmodified	_PSKRRRRVRLL_					0	0	0			REV__nc|ENSG00000130202|Q92692-2|NECTIN2	REV__nc|ENSG00000130202|Q92692-2|NECTIN2	MSMS	A375_MHC_IP_R1	1	719.123779296875	2	718.973485	1435.93242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.09	1	124.09	123.59	124.59	0								0	0	0	0.16353	1	46568	46568		0.35063	0	1		+		39551	27219	29058	29291	38509	38509					0.23188807158771851
PSKYCDLLHKS	11	Unmodified	_PSKYCDLLHKS_					0	0	0		ENSG00000176142|ENST00000319172|TMEM39A;ENST00000468545.1_1_3:119155636-119156697:-|nuORF	ENSG00000176142|ENST00000319172|TMEM39A	ENSG00000176142|ENST00000319172|TMEM39A	MSMS	A375_MHC_IP_R2	2	430.92279052734375	3	430.888546	1289.64381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.698	1	30.397	29.897	30.897	0.69872								0	0	0	0.16213	1	10391	10391		6.2344	0	1				39552	8003	29059	29292	38510	38510					0.010571113458127002
PSLALRAAS	9	Unmodified	_PSLALRAAS_					0	0	0			REV__ENST00000274181.7_1_5:5318379-5319375:+|nuORF	REV__ENST00000274181.7_1_5:5318379-5319375:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	443.6608581542969	2	443.261259	884.507966	-0.18188	-8.062E-05	-0.61456	-0.00027241	-0.79643	-0.00035303	443.2610998651824	43.561	0.55531	44.333	44.13	44.685	0.7724					16	10	2	0	0	0	0.27742	1	16258	16258		43.772	11.467	1	1556200	+		39553	23287	29060	29293	38511	38511					0.0610920461731439
PSLALRAAS	9	Unmodified	_PSLALRAAS_					0	0	0			REV__ENST00000274181.7_1_5:5318379-5319375:+|nuORF	REV__ENST00000274181.7_1_5:5318379-5319375:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	443.261259	884.507966	0.2835	0.00012566	-0.64114	-0.00028419	-0.35764	-0.00015853	443.2611191026366	44.497	0.40979	44.497	44.216	44.626	0	0.081907	-1.0566E-05	NaN	29.841	12	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2224900	+		39554	23287	29060	29293							0.0610920461731439
PSLDGGPL	8	Unmodified	_PSLDGGPL_					0	0	0			REV__CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant	REV__CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	755.7926635742188	1	755.393396	754.386119	-0.92075	-0.00069553	-0.12289	-9.2832E-05	-1.0436	-0.00078836	755.393237864604	67.139	0.6091	67.875	67.546	68.155	0.73631					21	11	2	0	0	0	0.78043	1	25436	25436		24.674	3.8027	1	5428400	+		39555	15626	29061	29294	38512	38512					-0.0008983746504327428
PSLEMTDTG	9	Unmodified	_PSLEMTDTG_					0	0	0		nc|ENSG00000156920|Q8IZF6-2|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4;ENSG00000156920|ENST00000394143|ADGRG4	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	MSMS	A375_MHC_IP_R2	2	475.6600036621094	2	475.710408	949.406262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.663	1	56.414	55.914	56.914	0.75074								0	0	0	0.15283	1	21032	21032		16.942	0	1				39556	6216	29062	29295	38513	38513					-0.07046454587407425
PSLGLSRLL	9	Unmodified	_PSLGLSRLL_					0	0	0			REV__ENSG00000186912|ENST00000374519|P2RY4	REV__ENSG00000186912|ENST00000374519|P2RY4	MULTI-MSMS	A375_MHC_IP_R2	2	478.7002868652344	2	478.300384	954.586216	-0.48087	-0.00023	0.14795	7.0766E-05	-0.33292	-0.00015924	478.300381739921	88.371	0.55584	89.103	88.825	89.381	0.7318					16	10	2	0	0	0	0.32092	1	33654	33654		29.082	0.59474	1	2290800	+		39557	21997	29063	29296	38514	38514					0.10710637202555517
PSLGVHFTNPL	11	Unmodified	_PSLGVHFTNPL_					0	0	0			REV__ENST00000372876.1_1_6:42712424-42712766:-|nuORF	REV__ENST00000372876.1_1_6:42712424-42712766:-|nuORF	MSMS	A375_MHC_IP_R2	2	591.390625	2	591.319306	1180.62406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.83	1	119.44	118.94	119.94	0.60909								0	0	0	0.15971	1	45172	45172		14.405	0	1		+		39558	24076	29064	29297	38515	38515					0.040971033973846716
PSLICSEGV	9	Unmodified	_PSLICSEGV_					0	0	0		ZNF662|p.P84S|1|0.43|ENSG00000182983|chr3:42913299-42913299|C/T|missense_variant	ZNF662|p.P84S|1|0.43|ENSG00000182983|chr3:42913299-42913299|C/T|missense_variant	ZNF662|p.P84S|1|0.43|ENSG00000182983|chr3:42913299-42913299|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	452.6478576660156	2	452.725861	903.437169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.107	1	95.107	94.607	95.607	0								0	0	0	0.1499	1	34956	34956		21.747	0	1				39559	30237	29065	29298	38516	38516					-0.018412564824984656
PSLIPVLRPY	10	Unmodified	_PSLIPVLRPY_					0	0	0		SHPRH|p.A299S|1|0.43|ENSG00000146414|chr6:145950351-145950351|C/A|missense_variant	SHPRH|p.A299S|1|0.43|ENSG00000146414|chr6:145950351-145950351|C/A|missense_variant	SHPRH|p.A299S|1|0.43|ENSG00000146414|chr6:145950351-145950351|C/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	385.59271240234375	3	385.569253	1153.68593	0.19163	7.3887E-05	0.19754	7.6164E-05	0.38917	0.00015005	385.56927343480965	19.757	0.50913	19.757	19.521	20.03	0					24	9	3	0	0	0	0.71881	1	4881	4881		3.8763	0.55669	1	4863500			39560	29156	29066	29299	38517	38517					0.11523454816506273
PSLIQKKKKS	10	Unmodified	_PSLIQKKKKS_					0	0	0		ENST00000474824.1_1_9:131600633-131644214:-|nuORF	ENST00000474824.1_1_9:131600633-131644214:-|nuORF	ENST00000474824.1_1_9:131600633-131644214:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	579.2736206054688	2	578.874248	1155.73394	-0.54843	-0.00031747	0.01196	6.9235E-06	-0.53647	-0.00031055	578.8741232789276	149.65	1.9333	149.65	148.07	150	0					197	61	4	0	0	0	0.72658	1	57018	57018		0.40072	0	1	1008300			39561	12411	29067	29300	38518	38518					0.1623052873655979
PSLLHDDKDP	10	Unmodified	_PSLLHDDKDP_					0	0	0			REV__BCL11B|p.E123K|5|0.24|ENSG00000127152|chr14:99257531-99257531|C/T|missense_variant	REV__BCL11B|p.E123K|5|0.24|ENSG00000127152|chr14:99257531-99257531|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	379.42010498046875	3	379.524261	1135.55095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.44	1	26.084	25.584	26.584	0.64368								0	0	0	0.15287	1	8500	8500		11.518	4.4808	1		+		39562	15503	29068	29301	38519	38519					-0.011400701159118398
PSLLPRSSF	9	Unmodified	_PSLLPRSSF_					0	0	0		ENST00000431392.1_1_2:20101100-20101259:-|nuORF	ENST00000431392.1_1_2:20101100-20101259:-|nuORF	ENST00000431392.1_1_2:20101100-20101259:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	501.6321105957031	2	502.282192	1002.54983	-0.48746	-0.00024484	2.6729	0.0013426	2.1855	0.0010977	502.28509477706535	42.015	0.56121	42.015	41.521	42.082	0					13	10	2	0	0	0	0.58271	1	14394	14394		20.454	3.5113	1	871680			39563	11869	29069	29302	38520	38520					0.048657603058586574
PSLPATWVCAT	11	Unmodified	_PSLPATWVCAT_					0	0	0		ENST00000490936.5_1_X:153579531-153588003:-|nuORF	ENST00000490936.5_1_X:153579531-153588003:-|nuORF	ENST00000490936.5_1_X:153579531-153588003:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	382.9267272949219	3	382.526837	1144.55868	-0.063169	-2.4164E-05	0.017021	6.5109E-06	-0.046148	-1.7653E-05	382.52686652696235	27.597	1.422	28.276	27.638	29.06	0.67857					77	27	6	0	0	0	0.67989	1	9424	9424		9.7643	0	1	366510000			39564	12651	29070	29303	38521	38521					-0.007816341199941235
PSLPIECFLY	10	Unmodified	_PSLPIECFLY_					0	0	0		ENST00000371162.4_1_2:111995636-111996092:-|nuORF	ENST00000371162.4_1_2:111995636-111996092:-|nuORF	ENST00000371162.4_1_2:111995636-111996092:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	394.9351501464844	3	394.535221	1180.58383	-0.081919	-3.232E-05	0.057722	2.2773E-05	-0.024197	-9.5465E-06	394.5352629559743	19.7	0.35608	19.7	19.471	19.827	0					11	6	2	0	0	0	0.83355	1	4954	4954		10.899	0	1	4210900			39565	11168	29071	29304	38522	38522					0.0007642068258064683
PSLQPSWPSPV	11	Unmodified	_PSLQPSWPSPV_					0	0	0		nc|ENSG00000160271|Q12967-3|RALGDS;nc|ENSG00000160271|Q12967-4|RALGDS;nc|ENSG00000160271|Q12967-6|RALGDS;nc|ENSG00000160271|Q12967-5|RALGDS;ENSG00000160271|ENST00000372050|RALGDS;nc|ENSG00000160271|Q12967-2|RALGDS	nc|ENSG00000160271|Q12967-3|RALGDS	nc|ENSG00000160271|Q12967-3|RALGDS	MSMS	A375_MHC_IP_R1	1	398.9801025390625	3	398.876634	1193.60807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.543	1	45.543	45.043	46.043	0								0	0	0	0.16191	1	15942	15942		8.7518	2.5599	1				39566	6410	29072	29305	38523	38523					0.019013971604636026
PSLRLQTDAR	10	Unmodified	_PSLRLQTDAR_					0	0	0		ENSG00000148291|ENST00000371964|SURF2;ENST00000495524.5_1_9:136223468-136223945:+|nuORF	ENSG00000148291|ENST00000371964|SURF2	ENSG00000148291|ENST00000371964|SURF2	MULTI-MSMS	A375_MHC_IP_R1	1	386.5804748535156	3	386.219283	1155.63602	0.019688	7.6039E-06	2.2513	0.0008695	2.271	0.00087711	386.22063351009706	24.05	0.91018	24.05	23.737	24.647	0					42	17	5	0	0	0	0.70334	1	6724	6724		6.6235	0	1	7364500			39567	5727	29073	29306	38524	38524					0.0644272014053513
PSLVLNPRLF	10	Unmodified	_PSLVLNPRLF_					0	0	0			REV__ENST00000254853.9_1_17:4938496-4938706:-|nuORF	REV__ENST00000254853.9_1_17:4938496-4938706:-|nuORF	MSMS	A375_MHC_IP_R1	1	578.3901977539062	2	578.347866	1154.68118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.414	1	98.414	97.914	98.914	0								0	0	0	0.15308	1	36159	36159		10.824	1.4765	1		+		39568	23142	29074	29307	38525	38525					0.11002570673736045
PSLVRPGLL	9	Unmodified	_PSLVRPGLL_					0	0	0			REV__ENSG00000167992|ENST00000335613|VWCE	REV__ENSG00000167992|ENST00000335613|VWCE	MULTI-SECPEP	A375_MHC_IP_R1	1	475.6600646972656	2	476.302927	950.591301	-0.49779	-0.0002371	0.58211	0.00027726	0.084316	4.016E-05	476.30281465205945	46.236	0.55594	46.236	45.839	46.395	0					14	10	2	0	0	0	0.69504	1	16272	16272		7.9102	3.1541	1	1042000	+		39569	20812	29075	29308	38526	38526					0.11402941065182404
PSNGPLLLE	9	Unmodified	_PSNGPLLLE_					0	0	0		ENST00000306185.7_1_8:121455511-121457378:-|nuORF	ENST00000306185.7_1_8:121455511-121457378:-|nuORF	ENST00000306185.7_1_8:121455511-121457378:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	470.6431579589844	2	470.260925	938.507297	-0.41061	-0.0001931	0.346	0.00016271	-0.064614	-3.0385E-05	470.26082607777215	37.923	0.71609	37.923	37.402	38.118	0					20	13	2	0	0	0	0.53748	1	12698	12698		18.146	0	1	1264500			39570	10576	29076	29309	38527	38527					0.0355836517762782
PSNLESSRMY	10	Unmodified	_PSNLESSRMY_					0	0	0		nc|ENSG00000153820|Q2M3C7-2|SPHKAP;ENSG00000153820|ENST00000392056|SPHKAP	nc|ENSG00000153820|Q2M3C7-2|SPHKAP	nc|ENSG00000153820|Q2M3C7-2|SPHKAP	MULTI-MSMS	A375_MHC_IP_R2	2	592.7206420898438	2	592.274238	1182.53392	-0.86287	-0.00051106	0.8168	0.00048377	-0.046069	-2.7285E-05	592.2739277782836	60.466	0.1539	61.211	61.109	61.263	0.74503					4	2	2	0	0	0	0.71466	1	22903	22903		5.7319	0	1	430010			39571	6042	29077	29310	38528	38528					-0.05004313993345022
PSPGLKQS	8	Unmodified	_PSPGLKQS_					0	0	0		ENST00000468308.1_1_2:172378863-172407640:+|nuORF	ENST00000468308.1_1_2:172378863-172407640:+|nuORF	ENST00000468308.1_1_2:172378863-172407640:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	406.6275939941406	2	407.226885	812.439217	-0.013294	-5.4139E-06	-0.58189	-0.00023696	-0.59518	-0.00024237	407.2268756715165	35.652	0.96954	35.652	35.369	36.339	0					51	18	5	0	0	0	0.24136	1	11842	11842		75.761	11.525	1	19043000			39572	12303	29078	29311	38529	38529					0.025495403176250875
PSPGLKQS	8	Unmodified	_PSPGLKQS_					0	0	0		ENST00000468308.1_1_2:172378863-172407640:+|nuORF	ENST00000468308.1_1_2:172378863-172407640:+|nuORF	ENST00000468308.1_1_2:172378863-172407640:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	406.9521484375	2	407.226885	812.439217	-0.20299	-8.2662E-05	0.079649	3.2435E-05	-0.12334	-5.0227E-05	407.22686784582055	34.955	0.65689	35.718	35.475	36.132	0.76338					30	12	3	0	0	0	0.37815	1	12711	12711		71.922	19.654	1	16932000			39573	12303	29078	29311	38530	38530					0.025495403176250875
PSPLLTCSLDL	11	Unmodified	_PSPLLTCSLDL_					0	0	0			REV__ENST00000478558.1_1_1:153631742-153633774:+|nuORF	REV__ENST00000478558.1_1_1:153631742-153633774:+|nuORF	MSMS	A375_MHC_IP_R1	1	579.7076416015625	2	579.807382	1157.60021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.23	1	114.23	113.73	114.73	0								0	0	0	0.15694	1	41877	41877		16.149	2.5342	1		+		39574	25218	29079	29312	38531	38531					0.027715018486787812
PSPLQPSW	8	Unmodified	_PSPLQPSW_					0	0	0		ENSG00000179526|ENST00000398712|SHARPIN	ENSG00000179526|ENST00000398712|SHARPIN	ENSG00000179526|ENST00000398712|SHARPIN	MULTI-MSMS	A375_MHC_IP_R1	1	457.65277099609375	2	456.23471	910.454868	-0.20414	-9.3137E-05	0.43215	0.00019716	0.228	0.00010402	456.234860020663	53.575	0.8137	53.575	53.199	54.013	0					44	15	4	0	0	0	0.76654	1	19076	19076		15.847	0	1	22032000			39575	8234	29080	29313	38532	38532					-0.003941731653412717
PSPLQPSW	8	Unmodified	_PSPLQPSW_					0	0	0		ENSG00000179526|ENST00000398712|SHARPIN	ENSG00000179526|ENST00000398712|SHARPIN	ENSG00000179526|ENST00000398712|SHARPIN	MULTI-MSMS	A375_MHC_IP_R2	2	457.1503601074219	2	456.23471	910.454868	-0.75217	-0.00034316	0.37642	0.00017174	-0.37575	-0.00017143	456.2348422786605	52.816	1.0164	53.568	53.233	54.249	0.75105					35	19	3	0	0	0	0.74945	1	19877	19877		20.454	1.1966	1	19267000			39576	8234	29080	29313	38533	38533					-0.003941731653412717
PSPPERPSL	9	Unmodified	_PSPPERPSL_					0	0	0		ENSG00000111249|ENST00000261726|CUX2	ENSG00000111249|ENST00000261726|CUX2	ENSG00000111249|ENST00000261726|CUX2	MULTI-SECPEP	A375_MHC_IP_R1	1	490.67626953125	2	490.263999	978.513445	-0.31698	-0.00015541	0.63476	0.0003112	0.31777	0.00015579	490.26455314015965	52.358	0.81336	52.358	51.982	52.796	0					40	15	4	0	0	0	0.38578	1	18681	18681		21.537	0	1	13416000			39577	2974	29081	29314	38534	38534					0.023328834091330464
PSPPLEKN	8	Unmodified	_PSPPLEKN_					0	0	0			REV__ENSG00000047849|ENST00000683076|MAP4;REV__nc|ENSG00000047849|P27816-3|MAP4	REV__ENSG00000047849|ENST00000683076|MAP4	MSMS	A375_MHC_IP_R1	1	441.1662292480469	2	441.239993	880.465432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.452	1	37.452	36.952	37.952	0								0	0	0	0.16876	1	12628	12628		23.148	0	1		+		39578	16365;27099	29082	29315	38535	38535					0.020418094890942484
PSPPPVKR	8	Unmodified	_PSPPPVKR_					0	0	0			REV__ENSG00000176208|ENST00000321990|ATAD5	REV__ENSG00000176208|ENST00000321990|ATAD5	MULTI-MSMS	A375_MHC_IP_R1	1	441.3138122558594	2	439.266345	876.518136	-0.058682	-2.5777E-05	0.093697	4.1158E-05	0.035014	1.5381E-05	439.26636073808237	38.86	5.133	38.86	37.556	42.689	0					293	100	5	0	0	0	0.77515	1	13308	13308		12.532	2.3482	1	188910000	+		39579	21394	29083	29316	38536	38536					0.07493812342568162
PSPRKIAD	8	Unmodified	_PSPRKIAD_					0	0	0			REV__ENST00000581139.1_1_18:2946096-2946618:-|nuORF	REV__ENST00000581139.1_1_18:2946096-2946618:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	441.6544189453125	2	442.253434	882.492316	-0.10461	-4.6264E-05	0.27287	0.00012068	0.16826	7.4413E-05	442.2533966323086	40.838	0.25121	40.838	40.712	40.963	0					8	4	2	0	0	0	0.96266	1	14039	14039		11.64	0	1	902560	+		39580	26344	29084	29317	38537	38537					0.0463691810026603
PSPSSYPQS	9	Unmodified	_PSPSSYPQS_					0	0	0			REV__nc|ENSG00000084676|Q15788-2|NCOA1	REV__nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-MSMS	A375_MHC_IP_R1	1	475.6166076660156	2	475.216714	948.418876	-0.66603	-0.00031651	0.22741	0.00010807	-0.43862	-0.00020844	475.216766435666	46.996	0.56405	46.996	46.699	47.263	0					17	10	2	0	0	0	0.64808	1	16486	16486		11.64	11.64	1	3388000	+		39581	16826	29085	29318	38538	38538					-0.057396751328496975
PSPTEELLPSC	11	Unmodified	_PSPTEELLPSC_					0	0	0			REV__ENST00000244745.3_2_6:21596471-21596606:+|nuORF	REV__ENST00000244745.3_2_6:21596471-21596606:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	586.6499633789062	2	586.778822	1171.54309	-0.64941	-0.00038106	-0.067167	-3.9412E-05	-0.71657	-0.00042047	586.7789074124731	40.504	0.45832	41.279	41.031	41.489	0.77451					12	8	2	0	0	0	0.84606	1	15064	15064		16.149	0.90062	1	1741800	+		39582	23107	29086	29319	38539	38539					-0.03581965427679279
PSPTFISLSQP	11	Unmodified	_PSPTFISLSQP_					0	0	0		ENST00000603475.1_1_9:90586022-90589145:-|nuORF	ENST00000603475.1_1_9:90586022-90589145:-|nuORF	ENST00000603475.1_1_9:90586022-90589145:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	586.6499633789062	2	587.311146	1172.60774	-0.72142	-0.0004237	1.3791	0.00080996	0.65768	0.00038626	587.3117461843016	40.74	0.55919	41.515	41.133	41.692	0.77451					18	10	2	0	0	0	0.98663	1	15064	15064		15.248	3.0078	1	2579100			39583	13897	29087	29320	38540	38540					0.028339774406276774
PSQDMCLSA	9	Unmodified	_PSQDMCLSA_					0	0	0		ENSG00000150938|ENST00000280527|CRIM1	ENSG00000150938|ENST00000280527|CRIM1	ENSG00000150938|ENST00000280527|CRIM1	MSMS	A375_MHC_IP_R2	2	476.1504211425781	2	476.199153	950.383753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.968	1	44.737	44.237	45.237	0.7691								0	0	0	0.15486	1	16398	16398		7.9102	0.62092	1				39584	5869	29088	29321	38541	38541					-0.09342377256677992
PSQFLLPR	8	Unmodified	_PSQFLLPR_					0	0	0		nc|ENSG00000167614|Q9H313-5|TTYH1	nc|ENSG00000167614|Q9H313-5|TTYH1	nc|ENSG00000167614|Q9H313-5|TTYH1	MULTI-SECPEP	A375_MHC_IP_R1	1	478.9596252441406	2	479.279452	956.544351	-0.612	-0.00029332	0.54064	0.00025912	-0.071364	-3.4203E-05	479.27963002267313	39.973	0.30565	39.973	39.744	40.05	0					8	5	2	0	0	0	0.972	1	13625	13625		11.64	7.6959	1	1721800			39585	14748	29089	29322	38542	38542					0.06434081514055379
PSQLYHGLG	9	Unmodified	_PSQLYHGLG_					0	0	0			REV__L1PB1_dup12829|chr21:46585548-46587567:+|1.182533549073013|0.3950341382787979|1.58|465.0|21|1|sense	REV__L1PB1_dup12829|chr21:46585548-46587567:+|1.182533549073013|0.3950341382787979|1.58|465.0|21|1|sense	MULTI-SECPEP	A375_MHC_IP_R1	1	486.16925048828125	2	486.250892	970.48723	-0.43661	-0.0002123	0.91087	0.00044291	0.47426	0.00023061	486.2513164295678	36.82	0.45331	36.82	36.592	37.045	0					14	8	2	0	0	0	0.74412	1	12260	12260		10.074	0	1	2084500	+		39586	26902	29090	29323	38543	38543					0.0008061423767458109
PSQQVRSRSW	10	Unmodified	_PSQQVRSRSW_					0	0	0		PPARGC1B|p.P327S|1|0.25|ENSG00000155846|chr5:149833052-149833052|C/T|missense_variant	PPARGC1B|p.P327S|1|0.25|ENSG00000155846|chr5:149833052-149833052|C/T|missense_variant	PPARGC1B|p.P327S|1|0.25|ENSG00000155846|chr5:149833052-149833052|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	616.2196044921875	2	615.820535	1229.62652	-0.66429	-0.00040908	-0.9539	-0.00058743	-1.6182	-0.00099651	615.8198154093811	27.138	0.51125	27.816	27.536	28.047	0.67857					17	9	3	0	0	0	0.51689	1	9278	9278		38.176	0	1	2343300			39587	15210	29091	29324	38544	38544					0.020889518550575303
PSQSSTSDEE	10	Unmodified	_PSQSSTSDEE_					0	0	0		nc|ENSG00000143375|Q9P2M7-2|CGN;ENSG00000143375|ENST00000271636|CGN	nc|ENSG00000143375|Q9P2M7-2|CGN	nc|ENSG00000143375|Q9P2M7-2|CGN	MSMS	A375_MHC_IP_R2	2	533.6715698242188	2	533.71219	1065.40983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.58	1	53.332	52.832	53.832	0.75225								0	0	0	0.15491	1	19822	19822		4.897	0.141	1				39588	5378	29092	29325	38545	38545					-0.12026113279830497
PSQSYTVQ	8	Unmodified	_PSQSYTVQ_					0	0	0			REV__nc|ENSG00000084734|Q14397|GCKR	REV__nc|ENSG00000084734|Q14397|GCKR	MULTI-SECPEP	A375_MHC_IP_R2	2	908.860107421875	1	909.431238	908.423961	-0.50501	-0.00045928	0.16587	0.00015085	-0.33914	-0.00030843	909.4312923715995	65.445	0.81043	66.183	65.715	66.526	0.73812					33	15	3	0	0	0	0.8957	1	24636	24636		21.747	0	1	9250100	+		39589	16828	29093	29326	38546	38546					-0.033913712702315024
PSQSYTVQ	8	Unmodified	_PSQSYTVQ_					0	0	0			REV__nc|ENSG00000084734|Q14397|GCKR	REV__nc|ENSG00000084734|Q14397|GCKR	MULTI-MATCH	A375_MHC_IP_R1	1		1	909.431238	908.423961	-0.30872	-0.00028076	0.16568	0.00015068	-0.14304	-0.00013008	909.4313311240718	66.249	1.0163	66.249	65.616	66.632	0	0.033211	-8.3402E-08	NaN	21.747	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9380600	+		39590	16828	29093	29326							-0.033913712702315024
PSRIRVFLF	9	Unmodified	_PSRIRVFLF_					0	0	0		ENST00000561903.6_1_16:1830271-1830817:+|nuORF	ENST00000561903.6_1_16:1830271-1830817:+|nuORF	ENST00000561903.6_1_16:1830271-1830817:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	568.1580810546875	2	567.842751	1133.67095	-0.7023	-0.0003988	-0.039945	-2.2682E-05	-0.74225	-0.00042148	567.842654795393	58.578	0.3043	59.327	59.187	59.491	0.74894					6	5	2	0	0	0	0.77834	1	22156	22156		4.756	0	1	685070			39591	13514	29094	29327	38547	38547					0.10946007739175911
PSRRPSRWRRA	11	Unmodified	_PSRRPSRWRRA_					0	0	0		ENST00000354249.8_2_16:2030177-2031410:-|nuORF;ENST00000356120.8_2_16:2030177-2031410:-|nuORF	ENST00000354249.8_2_16:2030177-2031410:-|nuORF	ENST00000354249.8_2_16:2030177-2031410:-|nuORF	MSMS	A375_MHC_IP_R1	1	475.6604309082031	3	475.607987	1423.80213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.7	1	41.7	41.2	42.2	0								0	0	0	0.16216	1	14414	14414		7.4771	4.6338	1				39592	10935	29095	29328	38548	38548					0.10718211159769453
PSRRPSRWRRA	11	Unmodified	_PSRRPSRWRRA_					0	0	0		ENST00000354249.8_2_16:2030177-2031410:-|nuORF;ENST00000356120.8_2_16:2030177-2031410:-|nuORF	ENST00000354249.8_2_16:2030177-2031410:-|nuORF	ENST00000354249.8_2_16:2030177-2031410:-|nuORF	MSMS	A375_MHC_IP_R2	2	475.66021728515625	3	475.607987	1423.80213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.601	1	39.376	38.876	39.876	0.77451								0	0	0	0.16232	1	14220	14220		6.6235	3.7802	1				39593	10935	29095	29328	38549	38549					0.10718211159769453
PSRVLRRLRRL	11	Unmodified	_PSRVLRRLRRL_					0	0	0		ENST00000477980.6_1_X:100878297-100878528:+|nuORF	ENST00000477980.6_1_X:100878297-100878528:+|nuORF	ENST00000477980.6_1_X:100878297-100878528:+|nuORF	MSMS	A375_MHC_IP_R2	2	711.8697509765625	2	711.468035	1420.92152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.26	1	144.28	143.78	144.78	0.024414								0	0	0	0.16354	1	56355	56355		0.30703	0.30703	1				39594	12455	29096	29329	38550	38550					0.22789404784475664
PSSELLRR	8	Unmodified	_PSSELLRR_					0	0	0			REV__ENST00000465753.1_1_13:111567123-111567360:-|nuORF	REV__ENST00000465753.1_1_13:111567123-111567360:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	479.6772155761719	2	479.277441	956.540328	-0.04758	-2.2804E-05	0.051625	2.4743E-05	0.0040458	1.9391E-06	479.27735550984244	114.71	5.1273	114.71	112.89	118.02	0					275	100	3	0	0	0	0.7779	1	41445	41445		2.5775	0	1	60362000	+		39595	25027	29097	29330	38551	38551					0.06031992020336929
PSSGRWVHLD	10	Unmodified	_PSSGRWVHLD_					0	0	0		nc|ENSG00000091622|Q9BZ71-2|PITPNM3;nc|ENSG00000091622|Q9BZ71-3|PITPNM3;ENSG00000091622|ENST00000262483|PITPNM3;PITPNM3|p.E677K|1|0.4|ENSG00000091622|chr17:6464297-6464297|C/T|missense_variant	nc|ENSG00000091622|Q9BZ71-2|PITPNM3	nc|ENSG00000091622|Q9BZ71-2|PITPNM3	MULTI-SECPEP	A375_MHC_IP_R1	1	384.61224365234375	3	385.196478	1152.56761	0.77777	0.0002996	0.065696	2.5306E-05	0.84347	0.0003249	385.1961642081762	49.096	0.50511	49.096	48.831	49.336	0					12	9	2	0	0	0	0.94102	1	17257	17257		1.4551	1.3323	1	1286200			39596	1983	29098	29331	38552	38552					-0.0025752443930286972
PSSKELLFY	9	Unmodified	_PSSKELLFY_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENST00000574894.1_1_16:16367711-16371421:+|nuORF	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-SECPEP	A375_MHC_IP_R1	1	542.6893310546875	2	542.289682	1082.56481	-0.60012	-0.00032544	1.1012	0.0005972	0.50113	0.00027176	542.2901900310167	74.962	0.55667	74.962	74.604	75.16	0					18	10	2	0	0	0	0.10495	1	27283	27283		65.474	36.392	1	2386400			39597	2432	29099	29332	38553	38553					0.026832073831883463
PSSKELLFY	9	Unmodified	_PSSKELLFY_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENST00000574894.1_1_16:16367711-16371421:+|nuORF	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-SECPEP	A375_MHC_IP_R2	2	542.689208984375	2	542.289682	1082.56481	-0.82819	-0.00044912	1.4702	0.00079727	0.642	0.00034815	542.2903260066597	74.044	0.60995	74.782	74.501	75.111	0.73752					21	11	2	0	0	0	0.11849	1	28090	28090		61.602	23.628	1	2501400			39598	2432	29099	29332	38554	38554					0.026832073831883463
PSSLQKPSI	9	Unmodified	_PSSLQKPSI_					0	0	0		ENSG00000203933|ENST00000370540|CXorf66	ENSG00000203933|ENST00000370540|CXorf66	ENSG00000203933|ENST00000370540|CXorf66	MULTI-SECPEP	A375_MHC_IP_R2	2	479.1324768066406	2	478.7742	955.533846	-1.0304	-0.00049331	0.23139	0.00011079	-0.79897	-0.00038252	478.774232611379	33.52	0.55685	34.272	34.146	34.702	0.75225					16	10	2	0	0	0	0.34746	1	12030	12030		31.268	0	1	4282000			39599	9402	29100	29333	38555	38555					0.054300540689382615
PSSPDSLHY	9	Unmodified	_PSSPDSLHY_					0	0	0		ENSG00000214078|ENST00000397443|CPNE1;ENST00000483495.5_1_20:34218821-34220289:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-SECPEP	A375_MHC_IP_R1	1	502.4541015625	2	501.729989	1001.44543	-0.33914	-0.00017015	1.5517	0.00077855	1.2126	0.00060839	501.7299617506769	33.529	0.35592	33.529	33.342	33.698	0					15	6	3	0	0	0	0.3607	1	10954	10954		34.102	3.8776	1	2258900			39600	9604	29101	29334	38556	38556					-0.05523986241530565
PSSQWDLVREE	11	Unmodified	_PSSQWDLVREE_					0	0	0			REV__NFRKB|p.Q522Rfs*29|1|0.25|ENSG00000170322|chr11:129877334-129877334|A/-|frameshift_variant	REV__NFRKB|p.Q522Rfs*29|1|0.25|ENSG00000170322|chr11:129877334-129877334|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	449.6174011230469	3	449.217608	1344.63099	-0.2312	-0.00010386	-0.18565	-8.3398E-05	-0.41685	-0.00018725	449.2174538178137	64.243	0.61105	64.983	64.648	65.259	0.74023					30	11	4	0	0	0	0.72583	1	24323	24323		7.4291	0.80562	1	6324400	+		39601	20984	29102	29335	38557	38557					-0.02753628512709838
PSSSPPHR	8	Unmodified	_PSSSPPHR_					0	0	0		ENST00000495593.1_1_1:18021396-18023872:+|nuORF	ENST00000495593.1_1_1:18021396-18023872:+|nuORF	ENST00000495593.1_1_1:18021396-18023872:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	432.6294860839844	2	432.719759	863.424964	-0.17438	-7.5459E-05	1.6806	0.00072723	1.5062	0.00065177	432.7204184147926	27.455	0.45614	28.134	27.945	28.401	0.67857					14	8	3	0	0	0	0.972	1	9389	9389		7.9102	3.1541	1	3598100			39602	12709	29103	29336	38558	38558					-0.012211121106702194
PSSTQPPPY	9	Unmodified	_PSSTQPPPY_					0	0	0			REV__ENST00000599786.1_1_19:41190691-41190799:-|nuORF	REV__ENST00000599786.1_1_19:41190691-41190799:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	487.6347961425781	2	487.234907	972.455261	0.19702	9.5996E-05	-0.3527	-0.00017185	-0.15568	-7.5852E-05	487.23471156879174	48.786	1.1654	48.786	48.476	49.642	0					56	22	4	0	0	0	0.12592	1	17403	17403		46.021	6.0636	1	112950000	+		39603	26496	29104	29337	38559	38559					-0.03206798236146824
PSTFKCNRVYM	11	Unmodified	_PSTFKCNRVYM_					0	0	0			REV__ENST00000452600.1_1_2:130987586-130988813:+|nuORF	REV__ENST00000452600.1_1_2:130987586-130988813:+|nuORF	MSMS	A375_MHC_IP_R2	2	673.4166259765625	2	673.323208	1344.63186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.06	1	112.78	112.28	113.28	0.72458								0	0	0	0.16108	1	42247	42247		13.042	2.243	1		+		39604	24902	29105	29338	38560	38560					-0.026668286690210152
PSTHYTATMY	10	Unmodified	_PSTHYTATMY_					0	0	0		ENSG00000116147|ENST00000367674|TNR;nc|ENSG00000116147|Q92752-2|TNR	ENSG00000116147|ENST00000367674|TNR	ENSG00000116147|ENST00000367674|TNR	MULTI-SECPEP	A375_MHC_IP_R1	1	586.1446533203125	2	586.258056	1170.50156	-0.17727	-0.00010392	1.1881	0.00069654	1.0108	0.00059262	586.2589661051272	37.223	0.30589	37.223	37.096	37.402	0					6	5	2	0	0	0	0.85226	1	12486	12486		14.838	2.5976	1	980260			39605	3376	29106	29339	38561	38561					-0.07687101396345497
PSTKEHFAR	9	Unmodified	_PSTKEHFAR_					0	0	0		ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	MULTI-SECPEP	A375_MHC_IP_R2	2	357.9134826660156	3	358.189324	1071.54614	-0.51421	-0.00018419	1.5205	0.00054464	1.0063	0.00036045	358.1887884331006	38.744	0.91776	39.519	39.149	40.067	0.77451					33	17	3	0	0	0	0.71341	1	14311	14311		8.9762	0	1	1935700			39606	7874	29107	29340	38562	38562					0.01323090531991511
PSTNTQPLQ	9	Unmodified	_PSTNTQPLQ_					0	0	0		nc|ENSG00000189308|Q6MZP7-2|LIN54;ENSG00000189308|ENST00000340417|LIN54;nc|ENSG00000189308|Q6MZP7-3|LIN54	nc|ENSG00000189308|Q6MZP7-2|LIN54	nc|ENSG00000189308|Q6MZP7-2|LIN54	MULTI-SECPEP	A375_MHC_IP_R2	2	493.6505126953125	2	493.251089	984.487624	-0.53905	-0.00026589	-0.13498	-6.6577E-05	-0.67402	-0.00033246	493.2509698407092	31.163	0.50909	31.882	31.618	32.128	0.71857					14	9	2	0	0	0	0.39388	1	10988	10988		25.399	0	1	2803500			39607	8977	29108	29341	38563	38563					-0.005240108331463489
PSTRLALSV	9	Unmodified	_PSTRLALSV_					0	0	0			REV__ENST00000609172.1_1_4:655442-655502:-|nuORF	REV__ENST00000609172.1_1_4:655442-655502:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	472.68170166015625	2	472.282192	942.549831	-0.49949	-0.0002359	-0.43304	-0.00020452	-0.93253	-0.00044042	472.281983534472	79.665	0.9135	80.409	80.098	81.011	0.74473					41	17	4	0	0	0	0.024574	1	30181	30181		79.596	4.6673	1	23508000	+		39608	26565	29109	29342	38564	38564					0.07625760305847962
PSTYWGNK	8	Unmodified	_PSTYWGNK_					0	0	0			REV__UBE2Q2|p.P370S|1|0.48|ENSG00000140367|chr15:75899438-75899438|C/T|missense_variant	REV__UBE2Q2|p.P370S|1|0.48|ENSG00000140367|chr15:75899438-75899438|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	476.6153564453125	2	476.729792	951.445031	-0.628	-0.00029938	0.23549	0.00011227	-0.39251	-0.00018712	476.72955717028583	41.524	0.40578	42.299	42.098	42.504	0.77451					11	7	2	0	0	0	0.77603	1	15332	15332		9.3474	0.75416	1	656850	+		39609	28939	29110	29343	38565	38565					-0.032633611707069576
PSTYWGNK	8	Unmodified	_PSTYWGNK_					0	0	0			REV__UBE2Q2|p.P370S|1|0.48|ENSG00000140367|chr15:75899438-75899438|C/T|missense_variant	REV__UBE2Q2|p.P370S|1|0.48|ENSG00000140367|chr15:75899438-75899438|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	476.729792	951.445031	-0.41354	-0.00019715	0.3214	0.00015322	-0.092144	-4.3928E-05	476.7297830581282	42.361	0.35424	42.361	42.132	42.487	0	0.031183	3.6595E-05	NaN	9.3474	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1000400	+		39610	28939	29110	29343							-0.032633611707069576
PSVPRRLSL	9	Unmodified	_PSVPRRLSL_					0	0	0			REV__HIVEP2|p.P2113L|1|0.28|ENSG00000010818|chr6:142759950-142759950|G/A|missense_variant	REV__HIVEP2|p.P2113L|1|0.28|ENSG00000010818|chr6:142759950-142759950|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	512.6845703125	2	512.816733	1023.61891	-0.4813	-0.00024682	-3.2469	-0.001665	-3.7282	-0.0019119	512.8145629901857	74.984	0.30341	74.984	74.857	75.16	0					7	5	2	0	0	0	0.71541	1	27341	27341		3.9444	1.3669	1	466630	+		39611	26746	29111	29344	38566	38566					0.10804844325434715
PSVPVPAP	8	Unmodified	_PSVPVPAP_					0	0	0		ENSG00000129757|ENST00000440480|CDKN1C;nc|ENSG00000129757|P49918|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	MULTI-MSMS	A375_MHC_IP_R1	1	382.6211242675781	2	382.221072	762.42759	0.39991	0.00015286	0.051293	1.9605E-05	0.45121	0.00017246	382.2210024755104	37.167	0.81558	37.167	36.945	37.761	0					27	15	3	0	0	0	0.20258	1	12497	12497		67.035	7.2401	1	6780600			39612	4211	29112	29345	38567	38567					0.03687343294279799
PSVVHRSF	8	Unmodified	_PSVVHRSF_					0	0	0			REV__ENST00000338785.7_1_21:38885923-38886019:+|nuORF	REV__ENST00000338785.7_1_21:38885923-38886019:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	465.17681884765625	2	464.753601	927.49265	-0.12415	-5.7698E-05	-0.17624	-8.1908E-05	-0.30039	-0.00013961	464.7535236093723	52.008	0.40798	52.008	51.778	52.186	0					14	7	2	0	0	0	0.73946	1	18407	18407		23.148	5.0134	1	1977900	+		39613	23705	29113	29346	38568	38568					0.026003378201494343
PSVVHRSF	8	Unmodified	_PSVVHRSF_					0	0	0			REV__ENST00000338785.7_1_21:38885923-38886019:+|nuORF	REV__ENST00000338785.7_1_21:38885923-38886019:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	465.1765441894531	2	464.753601	927.49265	-0.75044	-0.00034877	0.21854	0.00010157	-0.5319	-0.0002472	464.7536242198025	51.15	0.65712	51.903	51.614	52.271	0.75362					18	12	2	0	0	0	0.92636	1	19172	19172		16.942	8.349	1	1519600	+		39614	23705	29113	29346	38569	38569					0.026003378201494343
PSYGGQQQSY	10	Unmodified	_PSYGGQQQSY_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487509.6_1_16:31191511-31196501:+|nuORF	nc|ENSG00000089280|P35637-2|FUS	nc|ENSG00000089280|P35637-2|FUS	MULTI-MSMS	A375_MHC_IP_R1	1	557.663818359375	2	557.743628	1113.4727	-0.89061	-0.00049673	0.26768	0.00014929	-0.62293	-0.00034744	557.7440463476265	29.094	0.50807	29.094	28.895	29.403	0					24	9	4	0	0	0	0.1298	1	9028	9028		57.249	25.212	1	10113000			39615	1925	29114	29347	38570	38570					-0.07949502701148958
PSYRKKDKY	9	Unmodified	_PSYRKKDKY_					0	0	0			REV__INSL6|p.G121R|1|0.72|ENSG00000120210|chr9:5164194-5164194|C/T|missense_variant	REV__INSL6|p.G121R|1|0.72|ENSG00000120210|chr9:5164194-5164194|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	396.2483825683594	3	395.552262	1183.63496	-0.29266	-0.00011576	0.16308	6.4506E-05	-0.12959	-5.1258E-05	395.5521612696216	23.93	0.25367	23.93	23.737	23.991	0					9	4	3	0	0	0	0.70902	1	6694	6694		6.1918	0	1	3711400	+		39616	26796	29115	29348	38571	38571					0.05048505771674172
PTAHDANCA	9	Unmodified	_PTAHDANCA_					0	0	0		nc|ENSG00000100599|Q8TB24-4|RIN3;ENST00000418924.6_1_14:93042630-93154594:+|nuORF;ENSG00000100599|ENST00000216487|RIN3	nc|ENSG00000100599|Q8TB24-4|RIN3	nc|ENSG00000100599|Q8TB24-4|RIN3	MSMS	A375_MHC_IP_R2	2	450.16558837890625	2	450.187434	898.360315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.919	1	95.665	95.165	96.165	0.74604								0	0	0	0.15486	1	36064	36064		12.532	6.1774	1				39617	2198	29116	29349	38572	38572					-0.09293054978991222
PTAPAPLLSV	10	Unmodified	_PTAPAPLLSV_					0	0	0		ENST00000435504.8_1_2:25962949-25963207:-|nuORF	ENST00000435504.8_1_2:25962949-25963207:-|nuORF	ENST00000435504.8_1_2:25962949-25963207:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	483.68658447265625	2	483.286943	964.559333	-0.72742	-0.00035155	0.30051	0.00014523	-0.42691	-0.00020632	483.2869344272745	66.427	0.61338	67.163	66.882	67.495	0.73631					17	11	2	0	0	0	0.24499	1	25150	25150		52.268	8.4101	1	3010600			39618	11911	29117	29350	38573	38573					0.07563528591390423
PTAPTGAP	8	Unmodified	_PTAPTGAP_					0	0	0			REV__ENST00000529940.5_1_11:8752463-8832809:-|nuORF	REV__ENST00000529940.5_1_11:8752463-8832809:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	710.9969482421875	1	711.367181	710.359904	-0.081536	-5.8002E-05	-0.076439	-5.4376E-05	-0.15798	-0.00011238	711.3698309051038	113.71	0.15049	113.71	113.6	113.75	0					4	2	2	0	0	0	0.972	1	41646	41646		2.0598	0	1	2195900	+		39619	25832	29118	29351	38574	38574					-0.006861066365331681
PTAPTRPWWR	10	Unmodified	_PTAPTRPWWR_					0	0	0			REV__ENST00000373921.7_1_1:28209192-28209243:+|nuORF	REV__ENST00000373921.7_1_1:28209192-28209243:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	633.7686157226562	2	634.338364	1266.66217	-0.81447	-0.00051665	0.50575	0.00032081	-0.30873	-0.00019584	634.3389739841908	130.05	0.9606	130.27	129.74	130.7	0.2142					23	14	4	0	0	0	0.72014	1	51217	51217		3.2813	0.28607	1	23926000	+		39620	24102	29119	29352	38575	38575					0.03951034102669837
PTAVVPLRY	9	Unmodified	_PTAVVPLRY_					0	0	0		nc|ENSG00000113441|Q9UIQ6-3|LNPEP;nc|ENSG00000113441|Q9UIQ6-2|LNPEP;ENSG00000113441|ENST00000231368|LNPEP	nc|ENSG00000113441|Q9UIQ6-3|LNPEP	nc|ENSG00000113441|Q9UIQ6-3|LNPEP	MULTI-SECPEP	A375_MHC_IP_R1	1	508.7000732421875	2	508.300384	1014.58622	-0.34889	-0.00017734	-0.2534	-0.0001288	-0.60229	-0.00030614	508.30021193541694	62.086	1.1264	62.086	61.686	62.813	0					52	21	4	0	0	0	0.018928	1	22354	22354		111.29	67.429	1	30141000			39621	3151	29120	29353	38576	38576					0.07950637202554844
PTAVVPLRY	9	Unmodified	_PTAVVPLRY_					0	0	0		nc|ENSG00000113441|Q9UIQ6-3|LNPEP;nc|ENSG00000113441|Q9UIQ6-2|LNPEP;ENSG00000113441|ENST00000231368|LNPEP	nc|ENSG00000113441|Q9UIQ6-3|LNPEP	nc|ENSG00000113441|Q9UIQ6-3|LNPEP	MULTI-SECPEP	A375_MHC_IP_R2	2	507.655517578125	2	508.300384	1014.58622	-1.0544	-0.00053594	0.23388	0.00011888	-0.82049	-0.00041706	508.300458747597	61.248	1.1577	61.993	61.668	62.826	0.74504					47	22	4	0	0	0	0.021422	1	23192	23192		96.285	60.158	1	42024000			39622	3151	29120	29353	38577	38577					0.07950637202554844
PTCCCCCCWA	10	Unmodified	_PTCCCCCCWA_					0	0	0		ENST00000526531.1_1_11:830548-831706:+|nuORF;ENSG00000177685|ENST00000525077|CRACR2B;ENST00000527763.5_1_11:829331-831706:+|nuORF	ENST00000526531.1_1_11:830548-831706:+|nuORF	ENST00000526531.1_1_11:830548-831706:+|nuORF	MSMS	A375_MHC_IP_R2	2	546.7031860351562	2	546.648547	1091.28254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.232	1	88.964	88.464	89.464	0.7318								0	0	0	0.15642	1	33575	33575		0	0	1				39623	8102	29121	29354	38578	38578					-0.2594493481853988
PTDAYQLNY	9	Unmodified	_PTDAYQLNY_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	A375_MHC_IP_R1	1	543.1510009765625	2	542.750921	1083.48729	-0.70878	-0.00038469	-0.13187	-7.1575E-05	-0.84066	-0.00045627	542.7510698968156	65.473	0.91742	65.473	65.105	66.022	0					37	15	3	0	0	0	0.40495	1	23660	23660		40.239	40.239	1	5307200			39624	3768	29122	29355	38579	38579					-0.051114305530063575
PTDAYQLNY	9	Unmodified	_PTDAYQLNY_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	A375_MHC_IP_R2	2	543.1507568359375	2	542.750921	1083.48729	-0.8413	-0.00045661	-0.38619	-0.00020961	-1.2275	-0.00066622	542.7508753539013	64.859	0.66035	65.597	65.257	65.917	0.73811					28	12	3	0	0	0	0.035419	1	24575	24575		70.332	14.155	1	6167900			39625	3768	29122	29355	38580	38580					-0.051114305530063575
PTDEWGGCWC	10	Unmodified	_PTDEWGGCWC_					0	0	0			REV__ENST00000580454.5_2_17:77019075-77040120:+|nuORF	REV__ENST00000580454.5_2_17:77019075-77040120:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	385.9359436035156	3	385.140765	1152.40047	-0.025207	-9.7083E-06	-2.1864	-0.00084206	-2.2116	-0.00085177	385.14012339769255	26.043	0.30477	26.043	25.917	26.221	0					7	5	2	0	0	0	0.94421	1	7732	7732		0.69767	0.24315	1	989330	+		39626	26340	29123	29356	38581	38581					-0.1696387637070984
PTDGDSHAVTY	11	Unmodified	_PTDGDSHAVTY_					0	0	0		ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-MSMS	A375_MHC_IP_R1	1	582.1535034179688	2	581.754192	1161.49383	-0.19523	-0.00011358	-0.35154	-0.00020451	-0.54678	-0.00031809	581.7538380438534	25.179	0.5601	25.179	25.053	25.613	0					16	10	2	0	0	0	0.097637	1	7318	7318		70.332	46.311	1	8981700			39627	2808	29124	29357	38582	38582					-0.08045537392263213
PTDGDSHAVTY	11	Unmodified	_PTDGDSHAVTY_					0	0	0		ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-MSMS	A375_MHC_IP_R2	2	582.1541748046875	2	581.754192	1161.49383	-0.72923	-0.00042423	0.29346	0.00017072	-0.43577	-0.00025351	581.754224344795	24.696	0.45634	25.339	25.212	25.668	0.64368					15	8	2	0	0	0	0.18643	1	8187	8187		55.503	26.421	1	8377200			39628	2808	29124	29357	38583	38583					-0.08045537392263213
PTDGPPNSF	9	Unmodified	_PTDGPPNSF_					0	0	0		nc|ENSG00000072803|Q9UKB1-3|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11	nc|ENSG00000072803|Q9UKB1-3|FBXW11	nc|ENSG00000072803|Q9UKB1-3|FBXW11	MULTI-MSMS	A375_MHC_IP_R1	1	466.611572265625	2	466.211432	930.408311	-0.15639	-7.2909E-05	0.094932	4.4259E-05	-0.061454	-2.8651E-05	466.21148723853656	45.984	0.8096	45.984	45.585	46.395	0					27	15	2	0	0	0	0.02114	2	16099	16063;16099		82.529	42.572	1	3019400			39629	1548	29125	29358	38584;38585	38585					-0.05967657787289227
PTDGPPNSF	9	Unmodified	_PTDGPPNSF_					0	0	0		nc|ENSG00000072803|Q9UKB1-3|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11	nc|ENSG00000072803|Q9UKB1-3|FBXW11	nc|ENSG00000072803|Q9UKB1-3|FBXW11	MULTI-MSMS	A375_MHC_IP_R2	2	466.6114501953125	2	466.211432	930.408311	-0.7062	-0.00032924	0.58125	0.00027098	-0.12495	-5.8252E-05	466.211733615461	45.359	0.91232	46.124	45.59	46.503	0.76519					37	17	3	0	0	0	0.015701	2	16915	16910;16915		88.954	40.608	1	4158400			39630	1548	29125	29358	38586;38587	38587					-0.05967657787289227
PTDGPPNSFY	10	Unmodified	_PTDGPPNSFY_					0	0	0		nc|ENSG00000072803|Q9UKB1-3|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11	nc|ENSG00000072803|Q9UKB1-3|FBXW11	nc|ENSG00000072803|Q9UKB1-3|FBXW11	MULTI-MSMS	A375_MHC_IP_R1	1	548.1429443359375	2	547.743096	1093.47164	-0.53254	-0.00029169	0.022207	1.2164E-05	-0.51033	-0.00027953	547.7430453164259	64.015	1.6276	64.015	63.173	64.8	0					98	31	4	0	0	0	0.011121	6	23154	22940;23020;23154;23251;23373;23413		110.79	45.558	1	32102000			39631	1548	29126	29359	38588;38589;38590;38591;38592;38593	38590					-0.07135717070036662
PTDGPPNSFY	10	Unmodified	_PTDGPPNSFY_					0	0	0		nc|ENSG00000072803|Q9UKB1-3|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11	nc|ENSG00000072803|Q9UKB1-3|FBXW11	nc|ENSG00000072803|Q9UKB1-3|FBXW11	MULTI-MSMS	A375_MHC_IP_R2	2	547.67041015625	2	547.743096	1093.47164	-0.73657	-0.00040345	-0.0090552	-4.9599E-06	-0.74563	-0.00040841	547.7430221659802	63.269	1.826	64.01	63.28	65.106	0.74035					109	35	5	0	0	0	0.0065506	7	24033	23814;23830;23915;24033;24044;24134;24272		94.909	38.732	1	28325000			39632	1548	29126	29359	38594;38595;38596;38597;38598;38599;38600	38597					-0.07135717070036662
PTDITSLDQY	10	Unmodified	_PTDITSLDQY_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000551983.1_1_12:104335630-104337190:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	A375_MHC_IP_R2	2	576.6280517578125	2	576.774593	1151.53463	-0.17001	-9.8057E-05	-0.70841	-0.00040859	-0.87842	-0.00050665	576.7744495334503	77.396	0.40712	78.139	77.958	78.365	0.74293					12	7	2	0	0	0	0.50967	1	29346	29346		27.629	10.516	1	1753700			39633	7095	29127	29360	38601	38601					-0.03507196072655461
PTDKFCNKD	9	Unmodified	_PTDKFCNKD_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	355.9411315917969	3	356.499058	1066.47534	-0.038164	-1.3605E-05	1.5547	0.00055424	1.5165	0.00054064	357.1690647699794	43.583	0.50423	44.355	44.079	44.583	0.7724					16	9	3	0	0	0	0.78348	1	16232	16232		4.897	4.6902	1	1432200			39634	1269	29128	29361	38602	38602					-0.05523370567834718
PTDPKVVVY	9	Unmodified	_PTDPKVVVY_					0	0	0		nc|ENSG00000112297|Q9Y4K1-2|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1	nc|ENSG00000112297|Q9Y4K1-2|CRYBG1	nc|ENSG00000112297|Q9Y4K1-2|CRYBG1	MULTI-MSMS	A375_MHC_IP_R1	1	509.6842346191406	2	509.2844	1016.55425	-0.16377	-8.3404E-05	-0.28857	-0.00014696	-0.45234	-0.00023037	509.2842182290111	44.344	3.2972	44.344	43.655	46.952	0					146	64	5	0	0	0	0.0096896	1	15507	15507		110.67	64.654	1	306420000			39635	3070	29129	29362	38603	38603					0.046632247287675455
PTDPKVVVY	9	Unmodified	_PTDPKVVVY_					0	0	0		nc|ENSG00000112297|Q9Y4K1-2|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1	nc|ENSG00000112297|Q9Y4K1-2|CRYBG1	nc|ENSG00000112297|Q9Y4K1-2|CRYBG1	MULTI-SECPEP	A375_MHC_IP_R2	2	508.71099853515625	2	509.2844	1016.55425	-0.57945	-0.00029511	-0.23329	-0.00011881	-0.81274	-0.00041392	509.2842572441459	43.534	3.0371	44.307	43.876	46.913	0.7724					145	59	6	0	0	0	0.061442	1	16237	16237		63.961	39.94	1	321600000			39636	3070	29129	29362	38604	38604					0.046632247287675455
PTDSLNNDNKY	11	Unmodified	_PTDSLNNDNKY_					0	0	0		ENSG00000124422|ENST00000261497|USP22;nc|ENSG00000124422|Q9UPT9-2|USP22	ENSG00000124422|ENST00000261497|USP22	ENSG00000124422|ENST00000261497|USP22	MULTI-SECPEP	A375_MHC_IP_R2	2	640.4973754882812	2	640.791306	1279.56806	-1.0781	-0.00069081	-0.11389	-7.2982E-05	-1.192	-0.00076379	640.7915712020763	24.473	0.40631	25.116	24.958	25.364	0.64368					13	7	2	0	0	0	0.99507	1	8156	8156		2.2828	2.2828	1	2858200			39637	3899	29130	29363	38605	38605					-0.06054194300736526
PTDVISTFKL	10	Unmodified	_PTDVISTFKL_					0	0	0			REV__NEB|p.V4554Gfs*42|1|0.12|ENSG00000183091|chr2:151562738-151562739|-/CC|frameshift_variant	REV__NEB|p.V4554Gfs*42|1|0.12|ENSG00000183091|chr2:151562738-151562739|-/CC|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	374.61279296875	3	374.213135	1119.61758	0.33185	0.00012418	-0.24321	-9.1014E-05	0.088638	3.3169E-05	374.21291185787237	28.406	0.55544	28.406	28.088	28.643	0					22	10	3	0	0	0	0.71455	1	8746	8746		5.7834	0	1	8310800	+		39638	21736	29131	29364	38606	38606					0.06255165445986677
PTDYRKQLQY	10	Unmodified	_PTDYRKQLQY_					0	0	0		ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39	ENSG00000166887|ENST00000318006|VPS39	ENSG00000166887|ENST00000318006|VPS39	MULTI-SECPEP	A375_MHC_IP_R1	1	438.29461669921875	3	437.894577	1310.6619	-0.38477	-0.00016849	0.31908	0.00013972	-0.06569	-2.8765E-05	437.8946638500155	30.854	0.35532	30.854	30.653	31.009	0					15	6	3	0	0	0	0.74263	1	9854	9854		27.088	21.89	1	2568300			39639	7127	29132	29365	38607	38607					0.018995695921830702
PTDYRKQLQY	10	Unmodified	_PTDYRKQLQY_					0	0	0		ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39	ENSG00000166887|ENST00000318006|VPS39	ENSG00000166887|ENST00000318006|VPS39	MULTI-MSMS	A375_MHC_IP_R2	2	438.2947082519531	3	437.894577	1310.6619	-0.42966	-0.00018815	0.45661	0.00019995	0.026951	1.1802E-05	437.8947629902088	30.162	0.3052	30.88	30.708	31.013	0.71857					14	5	3	0	0	0	0.13916	1	10603	10603		55.467	32.451	1	2390500			39640	7127	29132	29365	38608	38608					0.018995695921830702
PTEAAQAPEV	10	Unmodified	_PTEAAQAPEV_					0	0	0		nc|ENSG00000204316|Q96DV4-2|MRPL38;ENST00000477736.5_1_17:73897061-73900795:-|nuORF;ENSG00000204316|ENST00000309352|MRPL38	nc|ENSG00000204316|Q96DV4-2|MRPL38	nc|ENSG00000204316|Q96DV4-2|MRPL38	MULTI-MSMS	A375_MHC_IP_R1	1	507.15069580078125	2	506.750921	1011.48729	0.065466	3.3175E-05	-0.58228	-0.00029507	-0.51681	-0.0002619	506.7505618471391	114.85	0.91204	114.85	114.52	115.43	0					42	17	4	0	0	0	0.60556	1	42072	42072		20.454	3.3407	1	21344000			39641	9429	29133	29366	38609	38609					-0.017994305530010024
PTEDTRAMEQ	10	Unmodified	_PTEDTRAMEQ_					0	0	0		ENSG00000156206|ENST00000286732|CFAP161	ENSG00000156206|ENST00000286732|CFAP161	ENSG00000156206|ENST00000286732|CFAP161	MSMS	A375_MHC_IP_R1	1	589.2601928710938	2	589.261327	1176.5081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.28	1	118.28	117.78	118.78	0								0	0	0	0.12703	1	43506	43506		36.127	7.0454	1				39642	6180	29134	29367	38610	38610					-0.07309208235642473
PTEEQEHY	8	Unmodified	_PTEEQEHY_					0	0	0			REV__ENSG00000151491|ENST00000281172|EPS8	REV__ENSG00000151491|ENST00000281172|EPS8	MULTI-MSMS	A375_MHC_IP_R2	2	517.6810913085938	2	516.717079	1031.4196	-0.59329	-0.00030656	-0.24184	-0.00012496	-0.83513	-0.00043152	516.7168754814029	85.572	0.8132	86.308	85.933	86.746	0.73602					34	15	4	0	0	0	0.77488	1	32525	32525		13.508	3.3245	1	17965000	+		39643	19756	29135	29368	38611	38611					-0.09484880483796587
PTEILYLTV	9	Unmodified	_PTEILYLTV_					0	0	0		ENST00000447144.5_1_3:9714379-9730718:+|nuORF;ENST00000414996.1_1_3:9710441-9730764:+|nuORF;nc|ENSG00000163719|Q8NCE2-3|MTMR14;nc|ENSG00000163719|Q8NCE2-2|MTMR14;ENSG00000163719|ENST00000296003|MTMR14	ENST00000447144.5_1_3:9714379-9730718:+|nuORF	ENST00000447144.5_1_3:9714379-9730718:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1050.3282470703125	1	1048.59249	1047.58521	0.42077	0.00044121	-0.96001	-0.0010067	-0.53924	-0.00056545	1048.5922724419797	116.8	0.66069	116.8	116.5	117.16	0					28	12	3	0	0	0	0.13797	1	42855	42855		43.858	18.459	1	25992000			39644	6712	29136	29369	38612	38612					0.06332378042975506
PTEILYLTV	9	Unmodified	_PTEILYLTV_					0	0	0		ENST00000447144.5_1_3:9714379-9730718:+|nuORF;ENST00000414996.1_1_3:9710441-9730764:+|nuORF;nc|ENSG00000163719|Q8NCE2-3|MTMR14;nc|ENSG00000163719|Q8NCE2-2|MTMR14;ENSG00000163719|ENST00000296003|MTMR14	ENST00000447144.5_1_3:9714379-9730718:+|nuORF	ENST00000447144.5_1_3:9714379-9730718:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	1048.59249	1047.58521	0.22655	0.00023756	-1.7808	-0.0018673	-1.5543	-0.0016298	1048.5909932765812	116.03	0.66154	116.72	116.29	116.95	0.68999	-0.040595	-0.00024876	NaN	43.858	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36518000			39645	6712	29136	29369							0.06332378042975506
PTEKEQLETDQ	11	Unmodified	_PTEKEQLETDQ_					0	0	0			REV__nc|ENSG00000143702|Q5SW79-3|CEP170	REV__nc|ENSG00000143702|Q5SW79-3|CEP170	MULTI-SECPEP	A375_MHC_IP_R1	1	659.71142578125	2	659.312071	1316.60959	-0.29103	-0.00019188	-0.44366	-0.00029251	-0.73469	-0.00048439	659.3118035162933	21.167	0.50722	21.167	20.844	21.352	0					21	9	3	0	0	0	0.97182	1	5497	5497		18.373	18.373	1	5616900	+		39646	19381	29137	29370	38613	38613					-0.036050583320729856
PTEKEQLETDQ	11	Unmodified	_PTEKEQLETDQ_					0	0	0			REV__nc|ENSG00000143702|Q5SW79-3|CEP170	REV__nc|ENSG00000143702|Q5SW79-3|CEP170	MULTI-MSMS	A375_MHC_IP_R2	2	659.7117919921875	2	659.312071	1316.60959	-1.2183	-0.00080325	0.14415	9.504E-05	-1.0742	-0.00070821	659.3122351584047	19.961	0.96435	20.571	20.044	21.008	0.61029					39	18	3	0	0	0	0.72656	2	6200	6200;6252		12.175	9.544	1	2069900	+		39647	19381	29137	29370	38614;38615	38614					-0.036050583320729856
PTEPLTHWY	9	Unmodified	_PTEPLTHWY_					0	0	0		ENSG00000142453|ENST00000327064|CARM1;nc|ENSG00000142453|Q86X55-1|CARM1	ENSG00000142453|ENST00000327064|CARM1	ENSG00000142453|ENST00000327064|CARM1	MULTI-SECPEP	A375_MHC_IP_R2	2	572.6571655273438	2	572.277106	1142.53966	-0.16235	-9.2909E-05	-1.1237	-0.00064308	-1.2861	-0.00073599	572.2770870060102	68.916	0.30465	69.651	69.474	69.779	0.73511					7	5	2	0	0	0	0.60917	1	26101	26101		19.257	7.0163	1	1000800			39648	5308	29138	29371	38616	38616					-0.02590847419378406
PTERELRVGL	10	Unmodified	_PTERELRVGL_					0	0	0		nc|ENSG00000164458|O15178-2|TBXT;nc|ENSG00000164458|O15178|TBXT;ENSG00000164458|ENST00000366876|TBXT	nc|ENSG00000164458|O15178-2|TBXT	nc|ENSG00000164458|O15178-2|TBXT	MULTI-MSMS	A375_MHC_IP_R1	1	390.9628601074219	3	390.559417	1168.65642	0.22149	8.6505E-05	2.3424	0.00091485	2.5639	0.0010014	390.5598764401452	20.431	1.0689	20.431	19.827	20.895	0					28	20	2	0	0	0	0.6614	1	5321	5321		16.275	0	1	3837100			39649	6841	29139	29372	38617	38617					0.07883890800371773
PTFDLSVF	8	Unmodified	_PTFDLSVF_					0	0	0		ENSG00000188716|ENST00000338487|DUSP29	ENSG00000188716|ENST00000338487|DUSP29	ENSG00000188716|ENST00000338487|DUSP29	MULTI-MSMS	A375_MHC_IP_R1	1	926.3115234375	1	925.466561	924.459284	-0.3954	-0.00036593	0.60207	0.0005572	0.20667	0.00019127	925.4670152076089	138.69	0.25009	138.69	138.51	138.76	0					9	4	3	0	0	0	0.73946	1	53360	53360		23.148	3.7094	1	3375000			39650	8926	29140	29373	38618	38618					-0.005967087424210149
PTFDLSVF	8	Unmodified	_PTFDLSVF_					0	0	0		ENSG00000188716|ENST00000338487|DUSP29	ENSG00000188716|ENST00000338487|DUSP29	ENSG00000188716|ENST00000338487|DUSP29	MULTI-MATCH	A375_MHC_IP_R2	2		1	925.466561	924.459284	-0.10594	-9.804E-05	-0.28914	-0.00026759	-0.39507	-0.00036563	925.4662092589826	138.66	0.25348	138.75	138.57	138.82	0.083954	0.029331	-0.00054416	NaN	23.148	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2983700			39651	8926	29140	29373							-0.005967087424210149
PTGDIQYFNTP	11	Unmodified	_PTGDIQYFNTP_					0	0	0			REV__ADAM19|p.M501I|1|0.26|ENSG00000135074|chr5:157496985-157496985|C/T|missense_variant	REV__ADAM19|p.M501I|1|0.26|ENSG00000135074|chr5:157496985-157496985|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	627.1951293945312	2	626.79586	1251.57717	-0.33198	-0.00020808	0.094181	5.9032E-05	-0.2378	-0.00014905	626.7959483453444	108.91	2.4912	108.91	107.34	109.83	0					57	27	3	0	0	0	0.49816	1	39879	39879		31.268	15.119	1	10460000	+		39652	15312	29141	29374	38619	38619					-0.038558009444159325
PTGDIQYFNTP	11	Unmodified	_PTGDIQYFNTP_					0	0	0			REV__ADAM19|p.M501I|1|0.26|ENSG00000135074|chr5:157496985-157496985|C/T|missense_variant	REV__ADAM19|p.M501I|1|0.26|ENSG00000135074|chr5:157496985-157496985|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	627.1959228515625	2	626.79586	1251.57717	-0.33198	-0.00020808	0.094181	5.9032E-05	-0.2378	-0.00014905	626.7959483453444	108.91	2.4912	108.91	107.34	109.83	0					57	27	3	0	0	0	0.9889	1	40103	40103		8.1555	0	1	10460000	+		39653	15312	29141	29374	38620	38620					-0.038558009444159325
PTGDIQYFNTP	11	Unmodified	_PTGDIQYFNTP_					0	0	0			REV__ADAM19|p.M501I|1|0.26|ENSG00000135074|chr5:157496985-157496985|C/T|missense_variant	REV__ADAM19|p.M501I|1|0.26|ENSG00000135074|chr5:157496985-157496985|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	626.79586	1251.57717	-0.80349	-0.00050362	0.19551	0.00012255	-0.60798	-0.00038108	626.7959589360696	108.29	1.5316	109.05	108.46	109.99	0.75436	0.07049	6.3433E-05	NaN	31.268	59	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9470000	+		39654	15312	29141	29374							-0.038558009444159325
PTGGSSQVL	9	Unmodified	_PTGGSSQVL_					0	0	0		ENSG00000120709|ENST00000239906|FAM53C	ENSG00000120709|ENST00000239906|FAM53C	ENSG00000120709|ENST00000239906|FAM53C	MULTI-SECPEP	A375_MHC_IP_R1	1	423.9510498046875	2	423.2218	844.429047	0.013228	5.5986E-06	0.40673	0.00017214	0.41996	0.00017774	423.2218749437641	37.558	0.56118	37.558	37.351	37.913	0					17	10	2	0	0	0	0.39388	1	12711	12711		39.957	9.7325	1	1882500			39655	3682	29142	29375	38621	38621					0.0006093259239605686
PTGTSTPNP	9	Unmodified	_PTGTSTPNP_					0	0	0			REV__ENSG00000184956|ENST00000421673|MUC6	REV__ENSG00000184956|ENST00000421673|MUC6	MULTI-SECPEP	A375_MHC_IP_R1	1	871.1862182617188	1	871.415588	870.408311	-0.52119	-0.00045417	0.23417	0.00020406	-0.28702	-0.00025011	871.415777462661	41.16	0.35364	41.16	40.963	41.317	0					11	6	2	0	0	0	0.04038	1	14226	14226		85.642	3.7513	1	1592800	+		39656	21850	29143	29376	38622	38622					-0.03207657787277185
PTGTSTPNP	9	Unmodified	_PTGTSTPNP_					0	0	0			REV__ENSG00000184956|ENST00000421673|MUC6	REV__ENSG00000184956|ENST00000421673|MUC6	MULTI-SECPEP	A375_MHC_IP_R2	2	871.1851196289062	1	871.415588	870.408311	-0.66783	-0.00058195	0.056022	4.8819E-05	-0.6118	-0.00053314	871.4155336081965	40.497	0.45832	41.272	41.031	41.489	0.77451					12	8	2	0	0	0	0.03109	1	14982	14982		82.529	2.933	1	2060900	+		39657	21850	29143	29376	38623	38623					-0.03207657787277185
PTGVDPRPE	9	Unmodified	_PTGVDPRPE_					0	0	0		ENST00000564400.5_1_16:58750074-58768228:-|nuORF;nc|ENSG00000125166|P00505-2|GOT2;ENSG00000125166|ENST00000245206|GOT2	ENST00000564400.5_1_16:58750074-58768228:-|nuORF	ENST00000564400.5_1_16:58750074-58768228:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	966.7222290039062	1	967.484336	966.47706	-0.043173	-4.1769E-05	-0.12951	-0.0001253	-0.17268	-0.00016707	967.48655389727	120.29	0.65554	120.82	120.5	121.15	0.5321					15	12	2	0	0	0	0.73363	1	46025	46025		6.7232	0	1	39949000			39658	3943	29144	29377	38624	38624					-0.0075199348757450934
PTHGPKPK	8	Unmodified	_PTHGPKPK_					0	0	0			REV__nc|ENSG00000072736|Q12968-5|NFATC3	REV__nc|ENSG00000072736|Q12968-5|NFATC3	MSMS	A375_MHC_IP_R2	2	431.2879943847656	2	431.250695	860.486836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.481	1	93.22	92.72	93.72	0.73902								0	0	0	0.16876	1	35171	35171		5.2307	2.3415	1		+		39659	16609	29145	29378	38625	38625					0.051012393084647556
PTINLQFKI	9	Unmodified	_PTINLQFKI_					0	0	0		ENSG00000070718|ENST00000396926|AP3M2	ENSG00000070718|ENST00000396926|AP3M2	ENSG00000070718|ENST00000396926|AP3M2	MULTI-MSMS	A375_MHC_IP_R2	2	358.9494934082031	3	358.54997	1072.62808	-0.63977	-0.00022939	-0.58399	-0.00020939	-1.2238	-0.00043878	358.5496287711607	52.4	0.91241	53.152	52.677	53.59	0.75225					35	14	3	0	0	0	0.32092	1	19773	19773		21.59	4.1475	1	15650000			39660	1497	29146	29379	38626	38626					0.09467192891088416
PTIVLLLLV	9	Unmodified	_PTIVLLLLV_					0	0	0			REV__nc|ENSG00000275763|Q6ZTR6|ZNF516-DT	REV__nc|ENSG00000275763|Q6ZTR6|ZNF516-DT	MULTI-MSMS	A375_MHC_IP_R1	1	981.5565795898438	1	980.675431	979.668155	-0.14616	-0.00014334	0.19814	0.00019432	0.051984	5.0979E-05	980.6756727836727	136.84	0.30823	136.84	136.72	137.03	0					8	5	2	0	0	0	0.46038	1	52727	52727		21.747	4.8044	1	1618600	+		39661	27544	29147	29380	38627	38627					0.17750739561677165
PTIVLLLLV	9	Unmodified	_PTIVLLLLV_					0	0	0			REV__nc|ENSG00000275763|Q6ZTR6|ZNF516-DT	REV__nc|ENSG00000275763|Q6ZTR6|ZNF516-DT	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	980.675431	979.668155	-0.14616	-0.00014334	0.19814	0.00019432	0.051984	5.0979E-05	980.6756727836727	136.84	0.30823	136.84	136.72	137.03	0	-0.04897	0.00068615	NaN	21.747	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1618600	+		39662	27544	29147	29380							0.17750739561677165
PTIVLLLLV	9	Unmodified	_PTIVLLLLV_					0	0	0			REV__nc|ENSG00000275763|Q6ZTR6|ZNF516-DT	REV__nc|ENSG00000275763|Q6ZTR6|ZNF516-DT	MULTI-MATCH	A375_MHC_IP_R2	2		1	980.675431	979.668155	0.1672	0.00016397	-0.96299	-0.00094438	-0.79579	-0.00078041	980.674440779575	136.83	0.25894	136.94	136.76	137.02	0.11134	0.04897	-0.00045255	NaN	21.747	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	882980	+		39663	27544	29147	29380							0.17750739561677165
PTKAGRQGV	9	Unmodified	_PTKAGRQGV_					0	0	0			REV__ENSG00000113657|ENST00000343218|DPYSL3	REV__ENSG00000113657|ENST00000343218|DPYSL3	MULTI-MSMS	A375_MHC_IP_R2	2	457.6639099121094	2	457.264333	912.514114	-0.16701	-7.6366E-05	0.16619	7.5991E-05	-0.00081954	-3.7474E-07	457.2643102122108	108.83	6.2759	109.57	108.24	114.52	0.74683					354	122	3	0	0	0	0.70886	1	40912	40912		6.2058	0.47393	1	33927000	+		39664	17796	29148	29381	38628	38628					0.05435722848858404
PTKDVPIVHT	10	Unmodified	_PTKDVPIVHT_					0	0	0		nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;ENST00000462032.1_1_1:29424324-29436027:+|nuORF	nc|ENSG00000159023|P11171-6|EPB41	nc|ENSG00000159023|P11171-6|EPB41	MULTI-MSMS	A375_MHC_IP_R1	1	369.62335205078125	3	369.544996	1105.61316	0.49762	0.00018389	-0.017096	-6.3178E-06	0.48053	0.00017758	369.54488236635706	44.293	0.56466	44.293	44.061	44.626	0					10	6	2	0	0	0	0.69833	1	15443	15443		7.9454	1.711	1	1518400			39665	6343	29149	29382	38629	38629					0.06457701023100526
PTKKLVPS	8	Unmodified	_PTKKLVPS_					0	0	0			REV__ENSG00000014164|ENST00000262577|ZC3H3	REV__ENSG00000014164|ENST00000262577|ZC3H3	MULTI-MSMS	A375_MHC_IP_R2	2	435.67584228515625	2	435.276378	868.538203	-0.70997	-0.00030903	-0.018187	-7.9165E-06	-0.72816	-0.00031695	435.2763434586525	25.255	0.5605	25.898	25.77	26.33	0.64368					17	10	3	0	0	0	0.6705	1	8450	8450		41.956	9.1699	1	3350700	+		39666	16240	29150	29383	38630	38630					0.09867563282512037
PTKKVLDDR	9	Unmodified	_PTKKVLDDR_					0	0	0			REV__TNFRSF8|p.E94K|1|0.29|ENSG00000120949|chr1:12104390-12104390|G/A|missense_variant	REV__TNFRSF8|p.E94K|1|0.29|ENSG00000120949|chr1:12104390-12104390|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	536.7108154296875	2	536.31148	1070.60841	-0.95217	-0.00051066	0.50027	0.0002683	-0.4519	-0.00024236	536.3115850322725	132.21	1.5205	132.21	131.48	133	0					57	29	4	0	0	0	0.75494	1	51127	51127		3.5965	0.31518	1	54445000	+		39667	28139	29151	29384	38631	38631					0.07592816880310238
PTKQQHVLEVF	11	Unmodified	_PTKQQHVLEVF_					0	0	0			REV__ENSG00000125676|ENST00000245838|THOC2	REV__ENSG00000125676|ENST00000245838|THOC2	MSMS	A375_MHC_IP_R2	2	663.2879028320312	2	663.364244	1324.71394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.21	1	132.4	131.9	132.9	0.18953								0	0	0	0.16265	1	52009	52009		4.897	1.3005	1		+		39668	18356	29152	29385	38632	38632					0.06456733005938986
PTKREKRRGRY	11	Unmodified	_PTKREKRRGRY_					0	0	0		ENST00000498416.2_1_13:60498979-60544091:-|nuORF	ENST00000498416.2_1_13:60498979-60544091:-|nuORF	ENST00000498416.2_1_13:60498979-60544091:-|nuORF	MSMS	A375_MHC_IP_R1	1	724.1329345703125	2	723.923658	1445.83276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.56	1	120.56	120.06	121.06	0								0	0	0	0.16138	1	44675	44675		11.495	0.6952	1				39669	12760	29153	29386	38633	38633					0.12767944754159544
PTKVLPGTID	10	Unmodified	_PTKVLPGTID_					0	0	0			REV__ENST00000469140.2_1_14:105933129-105933369:+|nuORF	REV__ENST00000469140.2_1_14:105933129-105933369:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	521.0492553710938	2	520.802957	1039.59136	-0.86146	-0.00044865	3.1588	0.0016451	2.2973	0.0011964	521.3072425510742	140.61	0.41429	140.61	140.34	140.75	0					9	7	2	0	0	0	0.93961	1	53940	53940		1.3295	0	1	693810	+		39670	25091	29154	29387	38634	38634					0.07314896274510829
PTKWDVKKL	9	Unmodified	_PTKWDVKKL_					0	0	0			REV__ENST00000477948.1_1_1:107866915-107871621:+|nuORF	REV__ENST00000477948.1_1_1:107866915-107871621:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	372.960205078125	3	372.225486	1113.65463	0.18565	6.9105E-05	2.9091	0.0010828	3.0947	0.0011519	372.56082136322925	18.882	0.34496	19.485	19.438	19.783	0.60308					21	7	4	0	0	0	0.73415	1	5807	5807		2.2828	0.19677	1	19557000	+		39671	25203	29155	29388	38635	38635					0.1023488178241223
PTLGLGDRP	9	Unmodified	_PTLGLGDRP_					0	0	0			REV__ENST00000376351.3_1_10:25463991-25464099:+|nuORF	REV__ENST00000376351.3_1_10:25463991-25464099:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	463.6584777832031	2	463.258717	924.50288	-0.38066	-0.00017634	-0.017515	-8.1141E-06	-0.39818	-0.00018446	463.25865493778446	32.287	0.71137	32.287	31.973	32.684	0					29	13	3	0	0	0	0.31606	1	10409	10409		32.786	2.1491	1	5769400	+		39672	24142	29156	29389	38636	38636					0.037609007547075635
PTLGQHNPVF	10	Unmodified	_PTLGQHNPVF_					0	0	0			REV__TRPV5|p.L234F|1|0.3|ENSG00000127412|chr7:142928753-142928753|G/A|missense_variant	REV__TRPV5|p.L234F|1|0.3|ENSG00000127412|chr7:142928753-142928753|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	369.95147705078125	3	370.529458	1108.56654	0.20256	7.5056E-05	0.17144	6.3524E-05	0.37401	0.00013858	370.5294338446309	50.451	0.55795	51.205	50.955	51.513	0.75406					16	10	2	0	0	0	0.92957	1	18963	18963		1.5923	0.52082	1	1333100	+		39673	28917	29157	29390	38637	38637					0.01660261191796053
PTLQEVILANL	11	Unmodified	_PTLQEVILANL_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	A375_MHC_IP_R1	1	605.7738037109375	2	605.855721	1209.69689	-0.12505	-7.576E-05	-0.62972	-0.00038152	-0.75477	-0.00045728	605.8552717417921	117.33	0.55624	117.33	117.06	117.61	0					16	10	2	0	0	0	0.79027	1	43167	43167		27.223	1.2025	1	12842000			39674	8255	29158	29391	38638	38638					0.10042812400138246
PTLRRRRFKMR	11	Unmodified	_PTLRRRRFKMR_					0	0	0		ENSG00000023171|ENST00000635736|GRAMD1B	ENSG00000023171|ENST00000635736|GRAMD1B	ENSG00000023171|ENST00000635736|GRAMD1B	MSMS	A375_MHC_IP_R1	1	758.9974365234375	2	758.95952	1515.90449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.97	1	115.97	115.47	116.47	0								0	0	0	0.16302	1	42534	42534		2.9952	1.5133	1				39675	1072	29159	29392	38639	38639					0.16717160907023754
PTMNHLYNV	9	Unmodified	_PTMNHLYNV_					0	0	0			REV__ENST00000522965.1_1_8:90770176-90802641:+|nuORF	REV__ENST00000522965.1_1_8:90770176-90802641:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	544.1947631835938	2	544.763309	1087.51206	-1.1758	-0.00064055	-3.9558	-0.002155	-5.1316	-0.0027955	545.2639301065776	58.854	0.86163	59.601	59.336	60.198	0.74714					29	16	3	0	0	0	0.71541	1	22436	22436		16.942	11.712	1	4601600	+		39676	17313	29160	29393	38640	38640					-0.028190739512638174
PTMYLALRN	9	Unmodified	_PTMYLALRN_					0	0	0		ENSG00000165097|ENST00000650836|KDM1B	ENSG00000165097|ENST00000650836|KDM1B	ENSG00000165097|ENST00000650836|KDM1B	MULTI-SECPEP	A375_MHC_IP_R1	1	360.27691650390625	3	360.19531	1077.5641	0.0022951	8.2669E-07	-0.73733	-0.00026558	-0.73503	-0.00026475	360.1950906972275	36.288	0.40746	36.288	36.133	36.541	0					11	7	2	0	0	0	0.65246	1	12217	12217		10.8	0	1	759320			39677	6911	29161	29394	38641	38641					0.028420894624787252
PTNSFVGCLK	10	Unmodified	_PTNSFVGCLK_					0	0	0		nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-SECPEP	A375_MHC_IP_R2	2	533.6478881835938	2	533.273509	1064.53247	-0.55583	-0.00029641	-0.48221	-0.00025715	-1.038	-0.00055356	533.2734557695952	47.235	0.25534	47.996	47.919	48.174	0.76128					8	4	2	0	0	0	0.79457	1	17687	17687		20.415	7.883	1	1345700			39678	1250	29162	29395	38642	38642					0.00278096708530029
PTPACIHPSRV	11	Unmodified	_PTPACIHPSRV_					0	0	0		ENST00000507297.5_1_5:138861213-138862139:-|nuORF;ENST00000514348.1_1_5:138861213-138862244:-|nuORF	ENST00000507297.5_1_5:138861213-138862139:-|nuORF	ENST00000507297.5_1_5:138861213-138862139:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	589.7428588867188	2	589.310958	1176.60736	-0.13306	-7.8415E-05	1.812	0.0010678	1.6789	0.00098942	589.3119808539973	127.95	1.0125	127.95	127.67	128.68	0					33	19	2	0	0	0	0.73647	1	49042	49042		2.7352	0.89096	1	16100000			39679	12863	29163	29396	38643	38643					0.02612279239747295
PTPLSRLLIL	10	Unmodified	_PTPLSRLLIL_					0	0	0			REV__ENST00000452753.1_1_7:111172595-111172637:-|nuORF	REV__ENST00000452753.1_1_7:111172595-111172637:-|nuORF	MSMS	A375_MHC_IP_R1	1	374.9684143066406	3	374.91302	1121.71723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.563	1	23.563	23.063	24.063	0								0	0	0	0.15464	1	6492	6492		5.7834	0.38072	1		+		39680	24903	29164	29397	38644	38644					0.16124027850628408
PTPPRRGA	8	Unmodified	_PTPPRRGA_					0	0	0			REV__ENST00000462632.5_3_6:29599325-29601631:-|nuORF	REV__ENST00000462632.5_3_6:29599325-29601631:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	426.645751953125	2	426.245944	850.477334	-0.73626	-0.00031383	0.49902	0.0002127	-0.23725	-0.00010113	426.24607672221316	123.22	1.9158	123.22	122.93	124.85	0					72	37	3	0	0	0	0.77717	1	45952	45952		5.2307	0	1	347120000	+		39681	24992	29165	29398	38645	38645					0.046114710229517186
PTPPVEDFCF	10	Unmodified	_PTPPVEDFCF_					0	0	0			REV__ENSG00000166317|ENST00000394810|SYNPO2L	REV__ENSG00000166317|ENST00000394810|SYNPO2L	MULTI-MSMS	A375_MHC_IP_R1	1	576.7080078125	2	576.257525	1150.5005	-0.13829	-7.9688E-05	-0.54501	-0.00031406	-0.68329	-0.00039375	576.2570078752615	103.2	0.81392	103.2	102.91	103.72	0					22	15	2	0	0	0	0.30274	1	37938	37938		39.957	0.0076237	1	1730600	+		39682	20668	29166	29399	38646	38646					-0.06873315765278676
PTPPVEDFCF	10	Unmodified	_PTPPVEDFCF_					0	0	0			REV__ENSG00000166317|ENST00000394810|SYNPO2L	REV__ENSG00000166317|ENST00000394810|SYNPO2L	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	576.257525	1150.5005	-0.17061	-9.8317E-05	-1.3269	-0.00076462	-1.4975	-0.00086294	576.2570850054154	102.49	0.71272	103.25	102.92	103.63	0.76428	0.026251	-0.00055285	NaN	39.957	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2180500	+		39683	20668	29166	29399							-0.06873315765278676
PTPTGDFIYL	10	Unmodified	_PTPTGDFIYL_					0	0	0		nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL	nc|ENSG00000123473|Q15468|STIL	nc|ENSG00000123473|Q15468|STIL	MULTI-SECPEP	A375_MHC_IP_R1	1	374.61279296875	3	375.193852	1122.55973	0.37161	0.00013943	1.055	0.00039583	1.4266	0.00053525	375.5283339202794	28.423	0.40506	28.423	28.238	28.643	0					11	7	2	0	0	0	0.92389	1	8746	8746		1.9064	1.6705	1	6156300			39684	3850	29167	29400	38647	38647					0.0033490352057015116
PTPTHQMD	8	Unmodified	_PTPTHQMD_					0	0	0			REV__nc|ENSG00000164654|Q9NXC5-2|MIOS	REV__nc|ENSG00000164654|Q9NXC5-2|MIOS	MULTI-SECPEP	A375_MHC_IP_R2	2	463.14471435546875	2	463.70546	925.396366	-0.57843	-0.00026822	0.44084	0.00020442	-0.13759	-6.38E-05	463.70563210792517	70.614	0.50542	71.348	71.048	71.553	0.73421					18	9	3	0	0	0	0.95423	1	26698	26698		7.9102	2.6795	1	2339100	+		39685	20506	29168	29401	38648	38648					-0.06931597802122269
PTPWRVLPR	9	Unmodified	_PTPWRVLPR_					0	0	0		ENST00000467201.5_1_7:100176020-100176179:-|nuORF	ENST00000467201.5_1_7:100176020-100176179:-|nuORF	ENST00000467201.5_1_7:100176020-100176179:-|nuORF	MSMS	A375_MHC_IP_R1	1	374.5906066894531	3	374.557459	1120.65055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.338	1	28.338	27.838	28.838	0								0	0	0	0.15486	1	8728	8728		8.9762	3.5735	1				39686	12278	29169	29402	38649	38649					0.09504837079362005
PTQAPTPLKPG	11	Unmodified	_PTQAPTPLKPG_					0	0	0			REV__ENST00000303460.4_1_12:54379677-54382961:+|nuORF	REV__ENST00000303460.4_1_12:54379677-54382961:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	369.94512939453125	3	369.544996	1105.61316	0.49762	0.00018389	-0.017096	-6.3178E-06	0.48053	0.00017758	369.54488236635706	44.293	0.56466	44.293	44.061	44.626	0					10	6	2	0	0	0	0.7039	1	15464	15464		8.7518	2.9684	1	1518400	+		39687	23447	29170	29403	38650	38650					0.06457701023077789
PTQNPSSASEY	11	Unmodified	_PTQNPSSASEY_					0	0	0		BEND4|p.P265Q|1|0.27|ENSG00000188848|chr4:42143688-42143688|G/T|missense_variant	BEND4|p.P265Q|1|0.27|ENSG00000188848|chr4:42143688-42143688|G/T|missense_variant	BEND4|p.P265Q|1|0.27|ENSG00000188848|chr4:42143688-42143688|G/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	591.1593017578125	2	590.759475	1179.5044	-0.87464	-0.0005167	0.093669	5.5336E-05	-0.78097	-0.00046137	590.7595271342531	71.642	0.45583	72.377	72.111	72.567	0.73421					15	8	2	0	0	0	0.72949	1	27161	27161		9.3831	1.473	1	2532900			39688	233	29171	29404	38651	38651					-0.07817554737835053
PTQSDKVKLL	10	Unmodified	_PTQSDKVKLL_					0	0	0			REV__nc|ENSG00000079387|Q9P0U3-2|SENP1	REV__nc|ENSG00000079387|Q9P0U3-2|SENP1	MULTI-SECPEP	A375_MHC_IP_R1	1	565.626708984375	2	564.834788	1127.65502	-0.47669	-0.00026925	1.1127	0.00062851	0.63604	0.00035926	564.835665254894	27.418	0.25285	27.418	27.331	27.584	0					6	4	2	0	0	0	0.88918	1	8378	8378		13.042	0	1	1328100	+		39689	16732	29172	29405	38652	38652					0.09630256711625407
PTQVASPSPQA	11	Unmodified	_PTQVASPSPQA_					0	0	0			REV__ENSG00000179270|ENST00000331664|PCARE	REV__ENSG00000179270|ENST00000331664|PCARE	MULTI-MSMS	A375_MHC_IP_R1	1	541.1694946289062	2	541.77747	1081.54039	-0.47748	-0.00025869	-0.30779	-0.00016675	-0.78527	-0.00042544	541.7772039803152	51.932	0.61192	51.932	51.625	52.237	0					26	10	3	0	0	0	0.73189	1	18443	18443		7.1017	7.1017	1	11970000	+		39690	21550	29173	29406	38653	38653					0.0028794722966267727
PTRAEWIRFDL	11	Unmodified	_PTRAEWIRFDL_					0	0	0			REV__ENST00000418273.2_1_10:88730536-88730896:-|nuORF	REV__ENST00000418273.2_1_10:88730536-88730896:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	468.6504211425781	3	468.585854	1402.73573	-1.0507	-0.00049232	0.052295	2.4505E-05	-0.99836	-0.00046782	468.5859453542709	37.409	0.40971	38.18	37.968	38.378	0.7709					13	7	2	0	0	0	0.73195	1	13608	13608		7.0371	1.5138	1	6705900	+		39691	24552	29174	29407	38654	38654					0.05047537754489895
PTRALGKLVR	10	Unmodified	_PTRALGKLVR_					0	0	0			REV__ENST00000338315.4_1_2:24248444-24248828:+|nuORF	REV__ENST00000338315.4_1_2:24248444-24248828:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	370.6204528808594	3	370.90838	1109.70331	-0.05474	-2.0303E-05	-0.32216	-0.00011949	-0.3769	-0.0001398	370.90824588097837	25.101	0.5599	25.744	25.568	26.128	0.64368					17	10	2	0	0	0	0.93406	1	8496	8496		9.544	1.935	1	6118500	+		39692	23699	29175	29408	38655	38655					0.152847951422018
PTREHSACL	9	Unmodified	_PTREHSACL_					0	0	0		ENST00000309502.7_1_1:203135914-203136022:+|nuORF	ENST00000309502.7_1_1:203135914-203136022:+|nuORF	ENST00000309502.7_1_1:203135914-203136022:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	508.1896667480469	2	507.245283	1012.47601	-0.558	-0.00028304	-0.31485	-0.0001597	-0.87285	-0.00044275	507.74747976296356	32.334	0.56052	32.334	32.024	32.585	0					21	10	3	0	0	0	0.64808	1	10399	10399		11.64	0.81637	1	2019300			39693	10612	29176	29409	38656	38656					-0.02972531128114042
PTRPRFHRW	9	Unmodified	_PTRPRFHRW_					0	0	0			REV__ENST00000495790.1_1_10:32573515-32573971:-|nuORF	REV__ENST00000495790.1_1_10:32573515-32573971:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	418.3270568847656	3	418.231857	1251.67374	-0.44684	-0.00018688	-2.2989	-0.00096146	-2.7457	-0.0011483	418.23091114777884	52.298	0.40443	53.051	52.78	53.184	0.75225					11	7	2	0	0	0	0.77003	1	19668	19668		11.495	2.5185	1	696810	+		39694	18128	29177	29410	38657	38657					0.057972759166887045
PTRVLTWSA	9	Unmodified	_PTRVLTWSA_					0	0	0			REV__nc|ENSG00000141376|Q9H6U6-6|BCAS3	REV__nc|ENSG00000141376|Q9H6U6-6|BCAS3	MULTI-MSMS	A375_MHC_IP_R1	1	516.7003173828125	2	515.787641	1029.56073	-0.36188	-0.00018665	-0.24137	-0.0001245	-0.60325	-0.00031115	515.7874688761362	71.44	0.96096	71.44	71.108	72.069	0					34	18	3	0	0	0	0.35581	1	26058	26058		26.884	5.137	1	42005000	+		39695	19258	29178	29411	38658	38658					0.04713162680127425
PTSAGDQYDCS	11	Unmodified	_PTSAGDQYDCS_					0	0	0		ENST00000494730.2_1_22:25436553-25570783:+|nuORF;nc|ENSG00000197077|Q9BY89-2|KIAA1671;ENSG00000197077|ENST00000358431|KIAA1671	ENST00000494730.2_1_22:25436553-25570783:+|nuORF	ENST00000494730.2_1_22:25436553-25570783:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	572.6163330078125	2	572.216585	1142.41862	-0.44948	-0.0002572	-0.048083	-2.7514E-05	-0.49756	-0.00028471	572.2164709539644	27.028	1.3624	27.028	26.524	27.887	0					52	26	3	0	0	0	0.7039	3	8078	8078;8102;8351		15.248	4.7715	1	3226300			39696	12694	29179	29412	38659;38660;38661	38659					-0.14689462915021068
PTSAGDQYDCS	11	Unmodified	_PTSAGDQYDCS_					0	0	0		ENST00000494730.2_1_22:25436553-25570783:+|nuORF;nc|ENSG00000197077|Q9BY89-2|KIAA1671;ENSG00000197077|ENST00000358431|KIAA1671	ENST00000494730.2_1_22:25436553-25570783:+|nuORF	ENST00000494730.2_1_22:25436553-25570783:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	572.615966796875	2	572.216585	1142.41862	-0.7177	-0.00041068	-0.045408	-2.5983E-05	-0.76311	-0.00043666	572.216528236637	25.616	0.86411	26.276	25.992	26.857	0.65992					35	16	3	0	0	0	0.63737	2	8542	8542;8572		20.415	1.3424	1	11418000			39697	12694	29179	29412	38662;38663	38662					-0.14689462915021068
PTSAGDQYDCS	11	Unmodified	_PTSAGDQYDCS_					0	0	0		ENST00000494730.2_1_22:25436553-25570783:+|nuORF;nc|ENSG00000197077|Q9BY89-2|KIAA1671;ENSG00000197077|ENST00000358431|KIAA1671	ENST00000494730.2_1_22:25436553-25570783:+|nuORF	ENST00000494730.2_1_22:25436553-25570783:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	572.6163330078125	2	572.216585	1142.41862	-0.53867	-0.00030823	-0.1012	-5.7907E-05	-0.63986	-0.00036614	572.2165103687104	26.774	1.1717	27.434	26.857	28.028	0.65992					39	22	2	0	0	0	0.72728	1	9101	9101		11.495	0.6952	1	3046600			39698	12694	29179	29412	38664	38664					-0.14689462915021068
PTSAKEHL	8	Unmodified	_PTSAKEHL_					0	0	0			REV__ENSG00000196781|ENST00000376499|TLE1	REV__ENSG00000196781|ENST00000376499|TLE1	MSMS	A375_MHC_IP_R2	2	441.6778259277344	2	441.737617	881.460681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.158	1	18.762	18.262	19.262	0.60308								0	0	0	0.16876	1	5386	5386		0.69038	0	1		+		39699	22230	29180	29413	38665	38665					0.015209253463240202
PTSAKEHL	8	Unmodified	_PTSAKEHL_					0	0	0			REV__ENSG00000196781|ENST00000376499|TLE1	REV__ENSG00000196781|ENST00000376499|TLE1	MSMS	A375_MHC_IP_R2	2	441.67791748046875	2	441.737617	881.460681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.17	1	18.773	18.273	19.273	0.60308								0	0	0	0.16876	1	5390	5390		0.69038	0	1		+		39700	22230	29180	29413	38666	38666					0.015209253463240202
PTSAKEHL	8	Unmodified	_PTSAKEHL_					0	0	0			REV__ENSG00000196781|ENST00000376499|TLE1	REV__ENSG00000196781|ENST00000376499|TLE1	MSMS	A375_MHC_IP_R2	2	441.69757080078125	2	441.737617	881.460681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.187	1	18.79	18.29	19.29	0.60308								0	0	0	0.16876	1	5397	5397		0.69038	0	1		+		39701	22230	29180	29413	38667	38667					0.015209253463240202
PTSEGHREWV	10	Unmodified	_PTSEGHREWV_					0	0	0		PLEKHA4|p.R672W|1|0.27|ENSG00000105559|chr19:48838080-48838080|G/A|missense_variant	PLEKHA4|p.R672W|1|0.27|ENSG00000105559|chr19:48838080-48838080|G/A|missense_variant	PLEKHA4|p.R672W|1|0.27|ENSG00000105559|chr19:48838080-48838080|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	599.1841430664062	2	599.285994	1196.55744	-0.24341	-0.00014587	-0.0066591	-3.9907E-06	-0.25007	-0.00014986	599.28584167304	35.292	0.40639	35.292	35.167	35.573	0					13	7	2	0	0	0	0.59108	1	11743	11743		21.537	3.1639	1	1703400			39702	15198	29181	29414	38668	38668					-0.0329813216455932
PTSLLLRHYHY	11	Unmodified	_PTSLLLRHYHY_					0	0	0		OR51L1|p.P162S|2|0.14|ENSG00000176798|chr11:4999466-4999466|C/T|missense_variant	OR51L1|p.P162S|2|0.14|ENSG00000176798|chr11:4999466-4999466|C/T|missense_variant	OR51L1|p.P162S|2|0.14|ENSG00000176798|chr11:4999466-4999466|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	467.61749267578125	3	467.254216	1398.74082	0.018222	8.5144E-06	2.3795	0.0011118	2.3978	0.0011204	467.59033048818844	21.818	0.30543	21.818	21.606	21.911	0					6	5	2	0	0	0	0.73078	1	5805	5805		4.1166	1.2733	1	708700			39703	15086	29182	29415	38669	38669					0.0573984161712815
PTSRNSDVPSP	11	Unmodified	_PTSRNSDVPSP_					0	0	0			REV__nc|ENSG00000148498|Q8TEW0-5|PARD3	REV__nc|ENSG00000148498|Q8TEW0-5|PARD3	MULTI-SECPEP	A375_MHC_IP_R1	1	578.1969604492188	2	578.783284	1155.55202	-0.16464	-9.5288E-05	1.5444	0.00089388	1.3798	0.00079859	578.7837578912855	59.713	0.81241	59.713	59.245	60.057	0					20	15	2	0	0	0	0.92455	1	21448	21448		11.495	0	1	2535900	+		39704	19637	29183	29416	38670	38670					-0.019538557470013984
PTSSVKAVL	9	Unmodified	_PTSSVKAVL_					0	0	0		ENSG00000177853|ENST00000316045|ZNF518A;nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	ENSG00000177853|ENST00000316045|ZNF518A	ENSG00000177853|ENST00000316045|ZNF518A	MULTI-SECPEP	A375_MHC_IP_R2	2	450.68701171875	2	451.271293	900.528032	-0.66484	-0.00030002	0.20306	9.1633E-05	-0.46178	-0.00020839	451.2713653556792	59.078	0.60948	59.825	59.387	59.996	0.74714					18	11	2	0	0	0	0.46045	1	22345	22345		29.082	2.1979	1	1191100			39705	8113	29184	29417	38671	38671					0.07378955557271638
PTTILSRYI	9	Unmodified	_PTTILSRYI_					0	0	0		ENST00000420707.5_1_1:152224197-152287408:+|nuORF	ENST00000420707.5_1_1:152224197-152287408:+|nuORF	ENST00000420707.5_1_1:152224197-152287408:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	354.6133117675781	3	355.209725	1062.60735	-0.15423	-5.4785E-05	-0.36097	-0.00012822	-0.5152	-0.000183	355.2095672446026	42.503	0.56162	43.275	42.91	43.472	0.7724					15	10	2	0	0	0	0.8028	1	15871	15871		0.20686	0	1	2181500			39706	11729	29185	29418	38672	38672					0.07854602511406483
PTTVSRVGF	9	Unmodified	_PTTVSRVGF_					0	0	0			REV__nc|ENSG00000183638|Q8IWN7-2|RP1L1	REV__nc|ENSG00000183638|Q8IWN7-2|RP1L1	MULTI-SECPEP	A375_MHC_IP_R1	1	482.6665344238281	2	482.266542	962.51853	0.012695	6.1222E-06	-0.20081	-9.6845E-05	-0.18812	-9.0723E-05	482.26639209004344	44.497	0.56229	44.497	44.165	44.727	0					22	10	3	0	0	0	0.71541	1	15579	15579		16.942	10.75	1	3228200	+		39707	21766	29186	29419	38673	38673					0.03577187271764615
PTVCIFKT	8	Unmodified	_PTVCIFKT_					0	0	0			REV__nc|ENSG00000168610|P40763-3|STAT3;REV__ENST00000462269.1_1_17:40467765-40469390:-|nuORF	REV__ENST00000462269.1_1_17:40467765-40469390:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	909.5731201171875	1	908.491001	907.483725	-0.0011229	-1.0201E-06	-0.17772	-0.00016146	-0.17884	-0.00016248	908.4914395432284	125.91	0.50183	125.91	125.6	126.1	0					12	9	2	0	0	0	0.77562	1	47973	47973		10.824	0	1	19892000	+		39708	20870;24986	29187	29420	38674	38674					0.02628228139451494
PTVDDEQYDLL	11	Unmodified	_PTVDDEQYDLL_					0	0	0			REV__ENST00000458495.1_1_21:33213068-33213167:+|nuORF	REV__ENST00000458495.1_1_21:33213068-33213167:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	436.9380798339844	3	436.538236	1306.59288	-0.083875	-3.6615E-05	-0.27218	-0.00011882	-0.35605	-0.00015543	436.5383080686009	54.617	1.1174	54.617	54.263	55.381	0					71	21	5	0	0	0	0.99738	1	19687	19687		1.1098	0	1	96455000	+		39709	24949	29188	29421	38675	38675					-0.04815559218013732
PTVDELRDRKI	11	Unmodified	_PTVDELRDRKI_					0	0	0		nc|ENSG00000087495|Q96KR7-3|PHACTR3;nc|ENSG00000087495|Q96KR7-2|PHACTR3;nc|ENSG00000087495|Q96KR7-4|PHACTR3;ENSG00000087495|ENST00000371015|PHACTR3	nc|ENSG00000087495|Q96KR7-3|PHACTR3	nc|ENSG00000087495|Q96KR7-3|PHACTR3	MSMS	A375_MHC_IP_R1	1	671.3798217773438	2	671.377883	1340.74121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.172	1	30.172	29.672	30.672	0								0	0	0	0.16312	1	9551	9551		2.4985	1.0166	1				39710	1876	29189	29422	38676	38676					0.08447216546323943
PTVDHYQL	8	Unmodified	_PTVDHYQL_					0	0	0		ENSG00000146221|ENST00000371505|TCTE1	ENSG00000146221|ENST00000371505|TCTE1	ENSG00000146221|ENST00000371505|TCTE1	MSMS	A375_MHC_IP_R2	2	486.6546630859375	2	486.742899	971.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.72	1	54.471	53.971	54.971	0.75105								0	0	0	0.16876	1	20284	20284		19.439	0	1				39711	5609	29190	29423	38677	38677					-0.01563091999230437
PTVELLKKY	9	Unmodified	_PTVELLKKY_					0	0	0		nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2;nc|ENSG00000126226|Q5JVF3-3|PCID2	nc|ENSG00000126226|Q5JVF3-2|PCID2	nc|ENSG00000126226|Q5JVF3-2|PCID2	MULTI-SECPEP	A375_MHC_IP_R1	1	363.9374694824219	3	364.221742	1089.6434	-0.045675	-1.6636E-05	0.0065239	2.3761E-06	-0.039151	-1.426E-05	364.55728988595854	25.942	0.25175	25.942	25.816	26.068	0					6	4	2	0	0	0	0.14105	1	7700	7700		45.7	15.859	1	1522300			39712	4031	29191	29424	38678	38678					0.10216059688286805
PTVGSLSW	8	Unmodified	_PTVGSLSW_					0	0	0			REV__ENST00000470601.5_1_3:51977371-51978822:+|nuORF	REV__ENST00000470601.5_1_3:51977371-51978822:+|nuORF	MSMS	A375_MHC_IP_R1	1	423.6207275390625	2	423.721436	845.428318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.22	1	139.22	138.72	139.72	0								0	0	0	0.16876	1	53520	53520		5.2307	0	1		+		39713	25107	29192	29425	38679	38679					-0.0005786205666709066
PTVHLMEY	8	Unmodified	_PTVHLMEY_					0	0	0			REV__ENSG00000137767|ENST00000260324|SQOR	REV__ENSG00000137767|ENST00000260324|SQOR	MSMS	A375_MHC_IP_R2	2	495.1762390136719	2	495.241678	988.468803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.323	1	73.059	72.559	73.559	0.73541								0	0	0	0.16876	1	27445	27445		24.674	4.2203	1		+		39714	19031	29193	29426	38680	38680					-0.025892637285551245
PTVLGRRTF	9	Unmodified	_PTVLGRRTF_					0	0	0			REV__ENSG00000105851|ENST00000496166|PIK3CG	REV__ENSG00000105851|ENST00000496166|PIK3CG	MULTI-SECPEP	A375_MHC_IP_R2	2	524.3746948242188	2	523.808908	1045.60326	-0.83204	-0.00043583	-2.6846	-0.0014062	-3.5167	-0.0018421	523.8079069787059	60.594	0.50951	61.339	60.955	61.464	0.74503					12	9	2	0	0	0	0.75466	1	22851	22851		4.3292	0	1	1892000	+		39715	17413	29194	29427	38681	38681					0.08228557808342885
PTVLPKPS	8	Unmodified	_PTVLPKPS_					0	0	0			REV__ENSG00000118707|ENST00000373872|TGIF2	REV__ENSG00000118707|ENST00000373872|TGIF2	MULTI-SECPEP	A375_MHC_IP_R1	1	838.9617309570312	1	838.503281	837.496004	-0.24463	-0.00020512	1.6192	0.0013577	1.3745	0.0011526	838.5062912723524	118.12	0.2541	118.12	117.97	118.22	0					5	4	2	0	0	0	0.972	1	43441	43441		0.6015	0	1	5862100	+		39716	18051	29195	29428	38682	38682					0.07075587874135181
PTVLPKPSELE	11	Unmodified	_PTVLPKPSELE_					0	0	0			REV__ENSG00000118707|ENST00000373872|TGIF2	REV__ENSG00000118707|ENST00000373872|TGIF2	MULTI-SECPEP	A375_MHC_IP_R1	1	404.295654296875	3	403.895695	1208.66525	-0.13981	-5.6467E-05	0.21718	8.7718E-05	0.077374	3.1251E-05	403.89569339570136	21.837	0.86393	21.837	21.403	22.267	0					55	16	5	0	0	0	0.97636	1	5759	5759		11.631	5.0079	1	32576000	+		39717	18051	29196	29429	38683	38683					0.06926819646196236
PTVLPKPSELE	11	Unmodified	_PTVLPKPSELE_					0	0	0			REV__ENSG00000118707|ENST00000373872|TGIF2	REV__ENSG00000118707|ENST00000373872|TGIF2	MULTI-MSMS	A375_MHC_IP_R2	2	403.9260559082031	3	403.895695	1208.66525	-0.3074	-0.00012416	-0.18641	-7.5291E-05	-0.49382	-0.00019945	403.89560120215384	20.174	0.86152	20.784	20.349	21.21	0.61029					42	16	3	0	0	0	0.67565	1	6218	6218		10.527	2.241	1	21979000	+		39718	18051	29196	29429	38684	38684					0.06926819646196236
PTVLSGLF	8	Unmodified	_PTVLSGLF_					0	0	0			REV__ENST00000508326.5_1_5:147774339-147782111:+|nuORF	REV__ENST00000508326.5_1_5:147774339-147782111:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	417.64190673828125	2	417.242004	832.469455	0.032415	1.3525E-05	-0.58701	-0.00024493	-0.5546	-0.0002314	417.2419029860322	86.622	0.50551	86.622	86.325	86.831	0					19	9	3	0	0	0	0.14919	1	31746	31746		86.121	4.2573	1	2388400	+		39719	25579	29197	29430	38685	38685					0.04651898982808689
PTVLSGLF	8	Unmodified	_PTVLSGLF_					0	0	0			REV__ENST00000508326.5_1_5:147774339-147782111:+|nuORF	REV__ENST00000508326.5_1_5:147774339-147782111:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	417.64202880859375	2	417.242004	832.469455	0.13255	5.5306E-05	-0.27068	-0.00011294	-0.13813	-5.7633E-05	417.2419333969053	85.815	0.50736	86.551	86.341	86.848	0.73602					20	9	3	0	0	0	0.14919	1	32661	32661		86.121	4.2573	1	3333500	+		39720	25579	29197	29430	38686	38686					0.04651898982808689
PTVLSGLF	8	Unmodified	_PTVLSGLF_					0	0	0			REV__ENST00000508326.5_1_5:147774339-147782111:+|nuORF	REV__ENST00000508326.5_1_5:147774339-147782111:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	417.242004	832.469455	0.032415	1.3525E-05	-0.58701	-0.00024493	-0.5546	-0.0002314	417.2419029860322	86.622	0.50551	86.622	86.325	86.831	0	0.035429	-0.00012318	NaN	86.121	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2388400	+		39721	25579	29197	29430							0.04651898982808689
PTVLSGLF	8	Unmodified	_PTVLSGLF_					0	0	0			REV__ENST00000508326.5_1_5:147774339-147782111:+|nuORF	REV__ENST00000508326.5_1_5:147774339-147782111:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	417.242004	832.469455	0.13255	5.5306E-05	-0.27068	-0.00011294	-0.13813	-5.7633E-05	417.2419333969053	85.815	0.50736	86.551	86.341	86.848	0.73602	-0.035429	0.0001408	NaN	86.121	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3333500	+		39722	25579	29197	29430							0.04651898982808689
PTVLSTSFSP	10	Unmodified	_PTVLSTSFSP_					0	0	0			REV__ENSG00000184956|ENST00000421673|MUC6	REV__ENSG00000184956|ENST00000421673|MUC6	MULTI-SECPEP	A375_MHC_IP_R2	2	517.7052001953125	2	518.27149	1034.52843	-0.70516	-0.00036546	0.45312	0.00023484	-0.25203	-0.00013062	518.2714158682799	70.679	0.35379	71.413	71.099	71.453	0.73421					12	6	3	0	0	0	0.48072	1	26801	26801		30.637	0	1	2926400	+		39723	21850	29198	29431	38687	38687					0.012543304864720994
PTVPPLRQL	9	Unmodified	_PTVPPLRQL_					0	0	0		ENST00000533210.5_1_8:144650405-144650852:-|nuORF	ENST00000533210.5_1_8:144650405-144650852:-|nuORF	ENST00000533210.5_1_8:144650405-144650852:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	511.1905212402344	2	510.813659	1019.61277	-0.075288	-3.8458E-05	-0.37371	-0.0001909	-0.449	-0.00022935	510.81349952267954	38.857	0.25352	38.857	38.679	38.933	0					8	4	2	0	0	0	0.65246	1	13183	13183		6.7232	0	1	2220000			39724	13194	29199	29432	38688	38688					0.10374326093892705
PTVPPLRQL	9	Unmodified	_PTVPPLRQL_					0	0	0		ENST00000533210.5_1_8:144650405-144650852:-|nuORF	ENST00000533210.5_1_8:144650405-144650852:-|nuORF	ENST00000533210.5_1_8:144650405-144650852:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	510.813659	1019.61277	-0.90875	-0.0004642	-0.38896	-0.00019868	-1.2977	-0.00066288	510.81360727293713	37.836	0.25642	38.611	38.483	38.739	0.77451	-0.12321	-8.4754E-06	NaN	6.7232	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2221000			39725	13194	29199	29432							0.10374326093892705
PTVSSLSGK	9	Unmodified	_PTVSSLSGK_					0	0	0			REV__ENST00000509475.5_1_4:40892379-41016395:-|nuORF	REV__ENST00000509475.5_1_4:40892379-41016395:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	876.8512573242188	1	875.483273	874.475997	-0.45661	-0.00039976	-0.22711	-0.00019883	-0.68372	-0.00059859	875.4829109209811	69.415	0.55788	70.149	69.879	70.437	0.73421					17	10	2	0	0	0	0.1478	1	26385	26385		42.095	2.1372	1	4379700	+		39726	20400	29200	29433	38689	38689					0.03373792143531773
PTVSSLSGK	9	Unmodified	_PTVSSLSGK_					0	0	0			REV__ENST00000509475.5_1_4:40892379-41016395:-|nuORF	REV__ENST00000509475.5_1_4:40892379-41016395:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	875.483273	874.475997	-0.08963	-7.847E-05	0.034213	2.9953E-05	-0.055418	-4.8517E-05	875.4828859752806	70.249	0.45999	70.249	70.034	70.494	0	0.050089	0.00017296	NaN	42.095	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3370300	+		39727	20400	29200	29433							0.03373792143531773
PTVSSLSGK	9	Unmodified	_PTVSSLSGK_					0	0	0			REV__ENST00000509475.5_1_4:40892379-41016395:-|nuORF	REV__ENST00000509475.5_1_4:40892379-41016395:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	875.483273	874.475997	-0.45661	-0.00039976	-0.22711	-0.00019883	-0.68372	-0.00059859	875.4829109209811	69.415	0.55788	70.149	69.879	70.437	0.73421	-0.050089	-5.5824E-05	NaN	42.095	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4379700	+		39728	20400	29200	29433							0.03373792143531773
PTVTINTLGV	10	Unmodified	_PTVTINTLGV_					0	0	0			REV__ENSG00000141956|ENST00000398548|PRDM15	REV__ENSG00000141956|ENST00000398548|PRDM15	MULTI-SECPEP	A375_MHC_IP_R2	2	508.1946105957031	2	507.795132	1013.57571	-0.83077	-0.00042186	0.3196	0.00016229	-0.51118	-0.00025957	507.79510114831555	50.852	0.50439	51.606	51.361	51.866	0.75406					14	9	2	0	0	0	0.33054	1	19144	19144		47.749	0	1	2124800	+		39729	19289	29201	29434	38690	38690					0.06946609757483202
PTVTTVYANNG	11	Unmodified	_PTVTTVYANNG_					0	0	0		nc|ENSG00000105854|Q15165-3|PON2;nc|ENSG00000105854|Q15165-1|PON2;ENSG00000105854|ENST00000222572|PON2	nc|ENSG00000105854|Q15165-3|PON2	nc|ENSG00000105854|Q15165-3|PON2	MSMS	A375_MHC_IP_R2	2	379.4476623535156	3	379.524261	1135.55095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.652	1	26.312	25.812	26.812	0.65992								0	0	0	0.16161	1	8595	8595		10.315	0	1				39730	2643	29202	29435	38691	38691					-0.011400701159118398
PTVVQQAR	8	Unmodified	_PTVVQQAR_					0	0	0		ENST00000476417.5_1_10:7615057-7659255:-|nuORF;nc|ENSG00000123243|Q86UX2-2|ITIH5;nc|ENSG00000123243|Q86UX2-3|ITIH5;nc|ENSG00000123243|Q86UX2|ITIH5;ENSG00000123243|ENST00000397146|ITIH5	ENST00000476417.5_1_10:7615057-7659255:-|nuORF	ENST00000476417.5_1_10:7615057-7659255:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	450.1587829589844	2	449.758884	897.503215	-0.25485	-0.00011462	-0.30309	-0.00013632	-0.55794	-0.00025094	449.75865924854423	27.269	0.40813	27.947	27.741	28.149	0.67857					15	7	3	0	0	0	0.71451	1	9318	9318		30.225	1.738	1	3617800			39731	3837	29203	29436	38692	38692					0.05036320474562217
PTVVTAPAFAY	11	Unmodified	_PTVVTAPAFAY_					0	0	0			REV__ENSG00000172548|ENST00000311946|NIPAL4	REV__ENSG00000172548|ENST00000311946|NIPAL4	MULTI-SECPEP	A375_MHC_IP_R1	1	569.2025146484375	2	568.802957	1135.59136	-0.60188	-0.00034235	-1.3008	-0.00073988	-1.9026	-0.0010822	569.3034816162719	68.324	1.1147	68.324	67.654	68.769	0					36	20	3	0	0	0	0.4173	1	24829	24829		43.772	0	1	1704600	+		39732	21155	29204	29437	38693	38693					0.028988962745188473
PTYEYALRHLY	11	Unmodified	_PTYEYALRHLY_					0	0	0		ENSG00000100600|ENST00000334869|LGMN	ENSG00000100600|ENST00000334869|LGMN	ENSG00000100600|ENST00000334869|LGMN	MULTI-SECPEP	A375_MHC_IP_R1	1	475.6603698730469	3	475.910227	1424.70885	-0.48676	-0.00023166	0.27444	0.00013061	-0.21232	-0.00010104	475.91032834356514	54.72	0.61132	54.72	54.364	54.975	0					20	11	3	0	0	0	0.98535	1	19563	19563		12.856	4.1042	1	3374200			39733	2199	29205	29438	38694	38694					0.013484291433314866
PTYNRIIN	8	Unmodified	_PTYNRIIN_					0	0	0		ANGPTL2|p.P227L|1|0.44|ENSG00000136859|chr9:127108052-127108052|G/A|missense_variant;ENSG00000136859|ENST00000373425|ANGPTL2	ANGPTL2|p.P227L|1|0.44|ENSG00000136859|chr9:127108052-127108052|G/A|missense_variant	ANGPTL2|p.P227L|1|0.44|ENSG00000136859|chr9:127108052-127108052|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	495.6739501953125	2	495.771991	989.529429	-0.76967	-0.00038158	1.3685	0.00067847	0.59885	0.00029689	495.77282680928204	61.769	0.75626	62.512	62.22	62.976	0.74263					24	14	2	0	0	0	0.77651	1	23507	23507		20.454	0	1	10324000			39734	129	29206	29439	38695	38695					0.034245896460333825
PTYRPSSPSY	10	Unmodified	_PTYRPSSPSY_					0	0	0			REV__nc|ENSG00000181222|P24928|POLR2A	REV__nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	A375_MHC_IP_R1	1	579.6864013671875	2	577.77747	1153.54039	0.36977	0.00021364	0.33079	0.00019112	0.70055	0.00040476	577.7771998497817	44.848	1.0129	44.848	44.471	45.484	0					66	19	5	0	0	0	0.70651	1	15807	15807		9.3831	1.473	1	23831000	+		39735	21643	29207	29440	38696	38696					-0.030240527703199405
PVAHKDSK	8	Unmodified	_PVAHKDSK_					0	0	0		ENSG00000169933|ENST00000675598|FRMPD4	ENSG00000169933|ENST00000675598|FRMPD4	ENSG00000169933|ENST00000675598|FRMPD4	MSMS	A375_MHC_IP_R2	2	441.3025817871094	2	441.245609	880.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.202	1	28.881	28.381	29.381	0.67857								0	0	0	0.16876	1	9716	9716		15.847	0	1				39736	7454	29208	29441	38697	38697					0.031646315832290384
PVCFQRPDTPA	11	Unmodified	_PVCFQRPDTPA_					0	0	0			REV__ENSG00000187033|ENST00000335556|SAMD7	REV__ENSG00000187033|ENST00000335556|SAMD7	MULTI-SECPEP	A375_MHC_IP_R2	2	410.12384033203125	3	410.869374	1229.58629	-0.11224	-4.6115E-05	0.42181	0.00017331	0.30957	0.00012719	410.86911390891487	36.053	0.30731	36.817	36.638	36.946	0.76338					6	5	2	0	0	0	0.99109	1	13141	13141		2.8433	0	1	587600	+		39737	22005	29209	29442	38698	38698					-0.01931730859723757
PVCGSDEITY	10	Unmodified	_PVCGSDEITY_					0	0	0		SLCO5A1|p.G574E|2|0.36|ENSG00000137571|chr8:69682245-69682245|C/T|missense_variant	SLCO5A1|p.G574E|2|0.36|ENSG00000137571|chr8:69682245-69682245|C/T|missense_variant	SLCO5A1|p.G574E|2|0.36|ENSG00000137571|chr8:69682245-69682245|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	543.2097778320312	2	542.23679	1082.45903	-0.59837	-0.00032446	-0.35412	-0.00019202	-0.95249	-0.00051647	542.2365835766561	75.1	0.86021	75.1	74.604	75.464	0					32	16	4	0	0	0	0.69833	1	27332	27332		13.042	3.6593	1	4576200			39738	29200	29210	29443	38699	38699					-0.07890496524601076
PVEELFKLL	9	Unmodified	_PVEELFKLL_					0	0	0		nc|ENSG00000066468|P21802-16|FGFR2;nc|ENSG00000066468|P21802-8|FGFR2;nc|ENSG00000066468|P21802-3|FGFR2;ENSG00000066468|ENST00000358487|FGFR2;nc|ENSG00000066468|P21802-18|FGFR2;nc|ENSG00000066468|P21802-5|FGFR2;nc|ENSG00000066468|P21802-6|FGFR2;nc|ENSG00000066468|P21802-17|FGFR2;nc|ENSG00000066468|P21802-2|FGFR2;nc|ENSG00000066468|P21802-23|FGFR2;nc|ENSG00000066468|P21802-21|FGFR2;nc|ENSG00000066468|P21802-15|FGFR2;nc|ENSG00000066468|P21802-20|FGFR2;nc|ENSG00000066468|P21802-4|FGFR2;nc|ENSG00000066468|P21802-22|FGFR2;ENST00000604236.5_1_10:123239373-123278228:-|nuORF;FGFR2|p.E718K|2|0.38|ENSG00000066468|chr10:121485438-121485438|C/T|missense_variant;nc|ENSG00000068078|P22607-3|FGFR3;ENSG00000068078|ENST00000440486|FGFR3;nc|ENSG00000068078|P22607-2|FGFR3;nc|ENSG00000077782|P11362-21|FGFR1;ENSG00000077782|ENST00000447712|FGFR1;nc|ENSG00000077782|P11362-19|FGFR1;nc|ENSG00000077782|P11362-2|FGFR1;nc|ENSG00000077782|P11362-7|FGFR1;nc|ENSG00000077782|P11362-20|FGFR1;nc|ENSG00000077782|P11362-3|FGFR1;nc|ENSG00000077782|P11362-14|FGFR1;nc|ENSG00000077782|P11362-4|FGFR1;nc|ENSG00000077782|P11362-5|FGFR1;ENST00000526570.5_1_8:38271148-38285795:-|nuORF;nc|ENSG00000077782|P11362-6|FGFR1	nc|ENSG00000066468|P21802-16|FGFR2;nc|ENSG00000068078|P22607-3|FGFR3;nc|ENSG00000077782|P11362-21|FGFR1	nc|ENSG00000066468|P21802-16|FGFR2	MULTI-MSMS	A375_MHC_IP_R1	1	1087.6177978515625	1	1087.63977	1086.6325	0.082337	8.9553E-05	4.2492	0.0046216	4.3316	0.0047112	1088.6449020229659	128.88	0.15384	128.88	128.79	128.94	0					4	2	2	0	0	0	0.7235	1	49523	49523		7.9102	3.1541	1	3803700			39739	1413;1451;1662	29211	29444	38700	38700					0.09264657314020042
PVEEYGGV	8	Unmodified	_PVEEYGGV_					0	0	0			REV__ENSG00000198844|ENST00000361926|ARHGEF15	REV__ENSG00000198844|ENST00000361926|ARHGEF15	MULTI-MSMS	A375_MHC_IP_R1	1	425.1656188964844	2	425.203076	848.391599	-0.28235	-0.00012006	0.64951	0.00027617	0.36716	0.00015612	425.2032813148619	94.711	0.56213	94.711	94.394	94.956	0					16	10	2	0	0	0	0.77554	1	34893	34893		11.114	0	1	2053700	+		39740	22431	29212	29445	38701	38701					-0.03866158673224618
PVEEYGGV	8	Unmodified	_PVEEYGGV_					0	0	0			REV__ENSG00000198844|ENST00000361926|ARHGEF15	REV__ENSG00000198844|ENST00000361926|ARHGEF15	MULTI-MSMS	A375_MHC_IP_R2	2	425.1658630371094	2	425.203076	848.391599	0.016395	6.9712E-06	0.67527	0.00028712	0.69166	0.0002941	425.20329547635754	94.05	0.55631	94.795	94.515	95.071	0.74474					20	10	3	0	0	0	0.77554	1	35766	35766		11.114	0	1	2536800	+		39741	22431	29212	29445	38702	38702					-0.03866158673224618
PVEEYGGV	8	Unmodified	_PVEEYGGV_					0	0	0			REV__ENSG00000198844|ENST00000361926|ARHGEF15	REV__ENSG00000198844|ENST00000361926|ARHGEF15	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	425.203076	848.391599	-0.28235	-0.00012006	0.64951	0.00027617	0.36716	0.00015612	425.2032813148619	94.711	0.56213	94.711	94.394	94.956	0	-0.041921	-8.0793E-06	NaN	11.114	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2053700	+		39742	22431	29212	29445							-0.03866158673224618
PVEEYGGV	8	Unmodified	_PVEEYGGV_					0	0	0			REV__ENSG00000198844|ENST00000361926|ARHGEF15	REV__ENSG00000198844|ENST00000361926|ARHGEF15	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	425.203076	848.391599	0.016395	6.9712E-06	0.67527	0.00028712	0.69166	0.0002941	425.20329547635754	94.05	0.55631	94.795	94.515	95.071	0.74474	0.041921	1.3822E-05	NaN	11.114	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2536800	+		39743	22431	29212	29445							-0.03866158673224618
PVEIFTLALW	10	Unmodified	_PVEIFTLALW_					0	0	0			REV__ENST00000313486.11_1_17:1422233-1422356:-|nuORF	REV__ENST00000313486.11_1_17:1422233-1422356:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	595.2357788085938	2	594.8368	1187.65905	-0.56352	-0.0003352	-1.868	-0.0011112	-2.4316	-0.0014464	595.3373461555758	76.757	0.50511	77.497	77.25	77.755	0.74052					14	9	2	0	0	0	0.9269	1	29204	29204		3.5965	0	1	2466400	+		39744	23521	29213	29446	38703	38703					0.07272346205309077
PVENKTKPV	9	Unmodified	_PVENKTKPV_					0	0	0			REV__MAGI1|p.E905K|1|0.37|ENSG00000151276|chr3:65379543-65379543|C/T|missense_variant	REV__MAGI1|p.E905K|1|0.37|ENSG00000151276|chr3:65379543-65379543|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	506.2030029296875	2	506.295299	1010.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.578	1	76.578	76.078	77.078	0								0	0	0	0.15486	1	27917	27917		13.508	0	1		+		39745	26979	29214	29447	38704	38704					0.0711802947733986
PVFCAMGC	8	Unmodified	_PVFCAMGC_					0	0	0			REV__ENSG00000124102|ENST00000243924|PI3	REV__ENSG00000124102|ENST00000243924|PI3	MULTI-MSMS	A375_MHC_IP_R1	1	828.9561767578125	1	827.324864	826.317587	-0.72315	-0.00059828	0.27538	0.00022783	-0.44778	-0.00037046	827.3249080901286	145.3	0.12369	145.3	145.23	145.36	0					14	7	3	0	0	0	0.77861	1	55706	55706		0	0	1	564570	+		39746	18270	29215	29448	38705	38705					-0.10251864632414254
PVFCAMGC	8	Unmodified	_PVFCAMGC_					0	0	0			REV__ENSG00000124102|ENST00000243924|PI3	REV__ENSG00000124102|ENST00000243924|PI3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	827.324864	826.317587	-0.72315	-0.00059828	0.27538	0.00022783	-0.44778	-0.00037046	827.3249080901286	145.3	0.12369	145.3	145.23	145.36	0	-0.028062	-4.4069E-05	NaN	0	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	564570	+		39747	18270	29215	29448							-0.10251864632414254
PVFCAMGC	8	Unmodified	_PVFCAMGC_					0	0	0			REV__ENSG00000124102|ENST00000243924|PI3	REV__ENSG00000124102|ENST00000243924|PI3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	827.324864	826.317587	-0.59588	-0.00049299	0.38924	0.00032202	-0.20665	-0.00017096	827.3250003007815	145.33	0.11288	145.35	145.28	145.4	0.021408	0.028062	5.013E-05	NaN	0	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	467750	+		39748	18270	29215	29448							-0.10251864632414254
PVFTLRMFRPL	11	Unmodified	_PVFTLRMFRPL_					0	0	0			REV__ENSG00000138031|ENST00000679454|ADCY3	REV__ENSG00000138031|ENST00000679454|ADCY3	MSMS	A375_MHC_IP_R1	1	459.64154052734375	3	459.600559	1375.77985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.807	1	21.807	21.307	22.307	0								0	0	0	0.16334	1	5782	5782		1.3296	0	1		+		39749	19057	29216	29449	38706	38706					0.10698850647145264
PVGAEQFMTQ	10	Unmodified	_PVGAEQFMTQ_					0	0	0			REV__ENST00000359866.8_1_19:17433644-17433728:+|nuORF	REV__ENST00000359866.8_1_19:17433644-17433728:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	554.1864624023438	2	554.260599	1106.50665	-0.75495	-0.00041844	2.6585	0.0014735	1.9036	0.0010551	554.261660526969	30.879	0.71117	30.879	30.703	31.414	0					15	13	2	0	0	0	0.69833	1	9956	9956		13.042	0.51092	1	1375800	+		39750	23882	29217	29450	38707	38707					-0.04234797533717938
PVGAGKQL	8	Unmodified	_PVGAGKQL_					0	0	0			REV__ENST00000217173.6_1_20:3090836-3102040:-|nuORF	REV__ENST00000217173.6_1_20:3090836-3102040:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	385.93212890625	2	385.231971	768.449388	0.4256	0.00016396	-0.11087	-4.271E-05	0.31473	0.00012124	385.23184798895016	37.338	0.51044	37.338	37.045	37.556	0					17	9	2	0	0	0	0.97144	1	12644	12644		2.3027	0.4585	1	3954400	+		39751	23040	29218	29451	38708	38708					0.055901480428474315
PVGALKKKYLR	11	Unmodified	_PVGALKKKYLR_					0	0	0		PRDM16|p.E884K|1|0.23|ENSG00000142611|chr1:3414606-3414606|G/A|missense_variant	PRDM16|p.E884K|1|0.23|ENSG00000142611|chr1:3414606-3414606|G/A|missense_variant	PRDM16|p.E884K|1|0.23|ENSG00000142611|chr1:3414606-3414606|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	637.160888671875	2	636.911165	1271.80778	-0.72423	-0.00046127	-1.8421	-0.0011733	-2.5663	-0.0016345	636.9097145659838	91.65	0.20213	91.65	91.503	91.706	0					5	3	2	0	0	0	0.99526	1	33662	33662		6.7232	0.99131	1	698590			39752	15223	29219	29452	38709	38709					0.1827449689885725
PVGTKSNPRVY	11	Unmodified	_PVGTKSNPRVY_					0	0	0			REV__ENST00000481908.5_1_X:134654863-134703297:+|nuORF	REV__ENST00000481908.5_1_X:134654863-134703297:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	609.7353515625	2	609.335487	1216.65642	0.11056	6.7371E-05	-0.29088	-0.00017724	-0.18031	-0.00010987	609.3351456564211	48.755	0.50669	48.755	48.476	48.983	0					24	9	3	0	0	0	0.65093	1	17184	17184		19.362	0	1	6523400	+		39753	20576	29220	29453	38710	38710					0.056758908003757824
PVGTKSNPRVY	11	Unmodified	_PVGTKSNPRVY_					0	0	0			REV__ENST00000481908.5_1_X:134654863-134703297:+|nuORF	REV__ENST00000481908.5_1_X:134654863-134703297:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	609.335487	1216.65642	0.11056	6.7371E-05	-0.29088	-0.00017724	-0.18031	-0.00010987	609.3351456564211	48.755	0.50669	48.755	48.476	48.983	0	0.06331	6.0244E-05	NaN	19.362	24	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6523400	+		39754	20576	29220	29453							0.056758908003757824
PVGTKSNPRVY	11	Unmodified	_PVGTKSNPRVY_					0	0	0			REV__ENST00000481908.5_1_X:134654863-134703297:+|nuORF	REV__ENST00000481908.5_1_X:134654863-134703297:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	609.335487	1216.65642	-0.34206	-0.00020843	-0.48101	-0.0002931	-0.82307	-0.00050153	609.3348764331109	47.867	0.70604	48.628	48.378	49.084	0.76127	-0.06331	-0.00017146	NaN	19.362	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6218500	+		39755	20576	29220	29453							0.056758908003757824
PVIELQPV	8	Unmodified	_PVIELQPV_					0	0	0			REV__CON__P02662	REV__CON__P02662	MULTI-MSMS	A375_MHC_IP_R2	2	895.69775390625	1	894.529495	893.522219	-0.31192	-0.00027903	-0.34647	-0.00030993	-0.65839	-0.00058895	894.5290958539563	85.164	1.6771	85.9	85.171	86.848	0.73602					42	32	2	0	0	0	0.7773	1	32183	32183		4.756	0.42677	1	2180800	+	+	39756	15853	29221	29454	38711	38711					0.07119857045620392
PVIELQPV	8	Unmodified	_PVIELQPV_					0	0	0			REV__CON__P02662	REV__CON__P02662	MULTI-MATCH	A375_MHC_IP_R1	1		1	894.529495	893.522219	-0.39955	-0.00035741	-0.15312	-0.00013697	-0.55267	-0.00049438	894.5292025579898	86.031	1.8749	86.031	85.159	87.034	0	0.065297	8.6005E-05	NaN	4.756	52	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1804200	+	+	39757	15853	29221	29454							0.07119857045620392
PVIELQPV	8	Unmodified	_PVIELQPV_					0	0	0			REV__CON__P02662	REV__CON__P02662	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	894.529495	893.522219	-0.31192	-0.00027903	-0.34647	-0.00030993	-0.65839	-0.00058895	894.5290958539563	85.164	1.6771	85.9	85.171	86.848	0.73602	-0.065297	-8.6955E-05	NaN	4.756	42	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2180800	+	+	39758	15853	29221	29454							0.07119857045620392
PVKDKPSDGL	10	Unmodified	_PVKDKPSDGL_					0	0	0			REV__ENST00000246911.6_1_17:41158964-41165399:+|nuORF	REV__ENST00000246911.6_1_17:41158964-41165399:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	528.68994140625	2	528.290214	1054.56587	-0.54661	-0.00028877	-0.16527	-8.7313E-05	-0.71189	-0.00037608	528.2901048973919	80.461	0.8128	81.205	80.81	81.622	0.74473					25	15	2	0	0	0	0.52461	1	30540	30540		36.127	0	1	8953700	+		39759	16537	29222	29455	38712	38712					0.040774217520947786
PVKDPEMDWFA	11	Unmodified	_PVKDPEMDWFA_					0	0	0		ENSG00000000457|ENST00000367771|SCYL3;nc|ENSG00000000457|Q8IZE3|SCYL3	ENSG00000000457|ENST00000367771|SCYL3	ENSG00000000457|ENST00000367771|SCYL3	MSMS	A375_MHC_IP_R1	1	445.64239501953125	3	445.541034	1333.60127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.917	1	41.917	41.417	42.417	0								0	0	0	0.16286	1	14497	14497		3.8459	0.25885	1				39760	839	29223	29456	38713	38713					-0.052182837823920636
PVKFWLLKNYL	11	Unmodified	_PVKFWLLKNYL_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	A375_MHC_IP_R2	2	474.7044677734375	3	474.283224	1419.82784	-0.36128	-0.00017135	0.48058	0.00022793	0.1193	5.6583E-05	474.28340773298953	149.44	1.3132	149.46	148.48	149.79	0.01825					56	37	2	0	0	0	1.0015	1	57774	57774		0.094841	0	1	124260			39761	2385	29224	29457	38714	38714					0.13472247838853946
PVKIEKEII	9	Unmodified	_PVKIEKEII_					0	0	0		ENSG00000173068|ENST00000380672|BNC2;nc|ENSG00000173068|Q6ZN30-2|BNC2	ENSG00000173068|ENST00000380672|BNC2	ENSG00000173068|ENST00000380672|BNC2	MULTI-MSMS	A375_MHC_IP_R2	2	357.2934265136719	3	356.893625	1067.65905	-0.31704	-0.00011315	-0.23063	-8.2309E-05	-0.54767	-0.00019546	356.8934582237606	70.983	0.70906	71.717	71.352	72.061	0.73421					21	13	2	0	0	0	0.7235	1	26981	26981		4.897	1.0207	1	2311800			39762	7764	29225	29458	38715	38715					0.1279234620533316
PVKLKGSKKF	10	Unmodified	_PVKLKGSKKF_					0	0	0			REV__RPS19|p.L22F|1|0.52|ENSG00000105372|chr19:41860838-41860838|C/T|missense_variant	REV__RPS19|p.L22F|1|0.52|ENSG00000105372|chr19:41860838-41860838|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	378.2607421875	3	377.913131	1130.71756	-0.49278	-0.00018623	-0.10146	-3.8342E-05	-0.59424	-0.00022457	377.9133771132985	36.964	0.76181	37.735	37.461	38.223	0.7709					34	14	5	0	0	0	0.71455	1	13683	13683		5.7834	1.2546	1	55038000	+		39763	27898	29226	29459	38716	38716					0.15743447570457647
PVKLRQGNRY	10	Unmodified	_PVKLRQGNRY_					0	0	0			REV__BCAM|p.E193K|1|0.39|ENSG00000187244|chr19:44813322-44813322|G/A|missense_variant	REV__BCAM|p.E193K|1|0.39|ENSG00000187244|chr19:44813322-44813322|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	410.30682373046875	3	410.907039	1229.69929	-0.15327	-6.2981E-05	2.0117	0.00082662	1.8584	0.00076364	410.9078016366443	36.88	0.25079	36.88	36.695	36.945	0					6	4	2	0	0	0	0.94163	1	12396	12396		1.7423	0	1	1053400	+		39764	15498	29227	29460	38717	38717					0.09362705648482006
PVLALRAH	8	Unmodified	_PVLALRAH_					0	0	0		ENST00000344575.4_1_7:72848585-72849218:+|nuORF	ENST00000344575.4_1_7:72848585-72849218:+|nuORF	ENST00000344575.4_1_7:72848585-72849218:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	439.17437744140625	2	438.774337	875.534121	-0.06698	-2.9389E-05	-0.071938	-3.1564E-05	-0.13892	-6.0954E-05	438.7743723250917	31.661	0.5068	31.661	31.312	31.819	0					16	9	3	0	0	0	0.77603	1	10187	10187		9.3474	0	1	1450200			39765	10895	29228	29461	38718	38718					0.09137518579461812
PVLKAKKKKLK	11	Unmodified	_PVLKAKKKKLK_					0	0	0		ENST00000539429.1_1_12:124144026-124144779:+|nuORF;nc|ENSG00000111358|Q13889-2|GTF2H3;ENSG00000111358|ENST00000543341|GTF2H3	ENST00000539429.1_1_12:124144026-124144779:+|nuORF	ENST00000539429.1_1_12:124144026-124144779:+|nuORF	MSMS	A375_MHC_IP_R1	1	640.9900512695312	2	640.960658	1279.90676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.14	1	79.14	78.64	79.64	0								0	0	0	0.16353	1	28886	28886		0.35063	0.35063	1				39766	2987	29229	29462	38719	38719					0.2780051986376293
PVLLKLLF	8	Unmodified	_PVLLKLLF_					0	0	0		nc|ENSG00000184619|Q6ZNG9|KRBA2	nc|ENSG00000184619|Q6ZNG9|KRBA2	nc|ENSG00000184619|Q6ZNG9|KRBA2	MSMS	A375_MHC_IP_R1	1	471.7215881347656	2	471.822964	941.631375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.59	1	147.59	147.09	148.09	0								0	0	0	0.16876	1	56388	56388		0	0	1				39767	14811	29230	29463	38720	38720					0.15822487735761115
PVLLKLLF	8	Unmodified	_PVLLKLLF_					0	0	0		nc|ENSG00000184619|Q6ZNG9|KRBA2	nc|ENSG00000184619|Q6ZNG9|KRBA2	nc|ENSG00000184619|Q6ZNG9|KRBA2	MSMS	A375_MHC_IP_R2	2	471.72137451171875	2	471.822964	941.631375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.63	1	147.65	147.15	148.15	0.019913								0	0	0	0.16876	1	57383	57383		0	0	1				39768	14811	29230	29463	38721	38721					0.15822487735761115
PVLLSDFEKA	10	Unmodified	_PVLLSDFEKA_					0	0	0		nc|ENSG00000162782|Q8NAT2|TDRD5;ENSG00000162782|ENST00000444136|TDRD5	nc|ENSG00000162782|Q8NAT2|TDRD5	nc|ENSG00000162782|Q8NAT2|TDRD5	MULTI-MSMS	A375_MHC_IP_R2	2	373.9378662109375	3	373.541252	1117.60193	0.55932	0.00020893	2.8189	0.001053	3.3782	0.0012619	373.8754237504246	43.603	1.0101	44.374	43.825	44.835	0.77127					29	19	2	0	0	0	0.70496	1	16393	16393		5.7834	0	1	2011000			39769	6596	29231	29464	38722	38722					0.047828789289496854
PVLSHEPLLV	10	Unmodified	_PVLSHEPLLV_					0	0	0			REV__ENSG00000188011|ENST00000343216|RTP5	REV__ENSG00000188011|ENST00000343216|RTP5	MULTI-MSMS	A375_MHC_IP_R1	1	552.7262573242188	2	552.326599	1102.63865	-0.75454	-0.00041675	0.068587	3.7882E-05	-0.68595	-0.00037887	552.3265962254185	86.029	1.5695	86.029	85.616	87.186	0					79	30	5	0	0	0	0.097291	1	31469	31469		64.236	1.6636	1	49420000	+		39770	22065	29232	29465	38723	38723					0.09143175545523263
PVLWQFWWWML	11	Unmodified	_PVLWQFWWWML_					0	0	0			REV__ENST00000398868.7_1_11:63426327-63426598:-|nuORF	REV__ENST00000398868.7_1_11:63426327-63426598:-|nuORF	MSMS	A375_MHC_IP_R2	2	796.4673461914062	2	796.399576	1590.7846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.283	1	81.028	80.528	81.528	0.74474								0	0	0	0.16332	1	30477	30477		1.4819	0.15237	1		+		39771	24380	29233	29466	38724	38724					0.012837347898994267
PVMDDDDVFP	10	Unmodified	_PVMDDDDVFP_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-2|DICER1	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MULTI-SECPEP	A375_MHC_IP_R2	2	384.23065185546875	3	383.830473	1148.46959	-0.10988	-4.2177E-05	0.62685	0.0002406	0.51697	0.00019843	383.83065070134995	77.04	0.60844	77.783	77.453	78.062	0.74293					17	11	2	0	0	0	0.9269	1	29247	29247		1.7423	0	1	1752100			39772	2211	29234	29467	38725	38725					-0.09870513870168907
PVNPKTDRLW	10	Unmodified	_PVNPKTDRLW_					0	0	0		nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-2|DDX1;ENST00000459706.1_1_2:15757448-15761320:+|nuORF	nc|ENSG00000079785|Q92499-3|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	MULTI-MSMS	A375_MHC_IP_R1	1	409.627685546875	3	409.227779	1224.66151	-0.15524	-6.3529E-05	-0.1391	-5.6923E-05	-0.29434	-0.00012045	409.2276601853878	41.953	0.71393	41.953	41.622	42.336	0					21	13	3	0	0	0	0.19136	1	14545	14545		50.13	39.815	1	3404000			39773	1702	29235	29468	38726	38726					0.05816194662975249
PVNPKTDRLW	10	Unmodified	_PVNPKTDRLW_					0	0	0		nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-2|DDX1;ENST00000459706.1_1_2:15757448-15761320:+|nuORF	nc|ENSG00000079785|Q92499-3|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	MULTI-MSMS	A375_MHC_IP_R2	2	409.6275634765625	3	409.227779	1224.66151	-0.23415	-9.5822E-05	-0.75573	-0.00030927	-0.98988	-0.00040509	409.22740592792405	41.145	0.60801	41.92	41.641	42.249	0.77451					17	11	2	0	0	0	0.25644	2	15275	15212;15275		43.477	35.531	1	2628800			39774	1702	29235	29468	38727;38728	38728					0.05816194662975249
PVNTFQAVLV	10	Unmodified	_PVNTFQAVLV_					0	0	0		ENSG00000109927|ENST00000392793|TECTA	ENSG00000109927|ENST00000392793|TECTA	ENSG00000109927|ENST00000392793|TECTA	MSMS	A375_MHC_IP_R1	1	544.3651733398438	2	544.310949	1086.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.299	1	59.299	58.799	59.799	0								0	0	0	0.15353	1	21326	21326		9.3831	0	1				39775	2905	29236	29469	38729	38729					0.06750602511419856
PVPARSRE	8	Unmodified	_PVPARSRE_					0	0	0		ENST00000547260.5_1_12:49161535-49161745:-|nuORF	ENST00000547260.5_1_12:49161535-49161745:-|nuORF	ENST00000547260.5_1_12:49161535-49161745:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	456.65655517578125	2	456.256508	910.498464	0.02086	9.5177E-06	0.013011	5.9365E-06	0.033872	1.5454E-05	456.25640721189586	117.06	1.6747	117.06	116.24	117.92	0					44	32	2	0	0	0	0.77741	1	42668	42668		4.3292	0	1	10394000			39776	13341	29237	29470	38730	38730					0.039634363317986754
PVPDAPPQL	9	Unmodified	_PVPDAPPQL_					0	0	0			REV__ENST00000505322.5_1_1:2100378-2116445:+|nuORF	REV__ENST00000505322.5_1_1:2100378-2116445:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	467.6557312011719	2	467.255643	932.496732	-0.092637	-4.3285E-05	0.14789	6.9101E-05	0.055249	2.5815E-05	467.25555083303635	53.945	0.75856	53.945	53.555	54.314	0					26	14	3	0	0	0	0.25276	1	19274	19274		34.102	34.102	1	2047900	+		39777	25533	29238	29471	38731	38731					0.027783825231722403
PVPDAPPQL	9	Unmodified	_PVPDAPPQL_					0	0	0			REV__ENST00000505322.5_1_1:2100378-2116445:+|nuORF	REV__ENST00000505322.5_1_1:2100378-2116445:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	467.14532470703125	2	467.255643	932.496732	-0.092637	-4.3285E-05	0.14789	6.9101E-05	0.055249	2.5815E-05	467.25555083303635	53.945	0.75856	53.945	53.555	54.314	0					26	14	3	0	0	0	0.39388	1	19196	19196		32.305	8.2849	1	2047900	+		39778	25533	29238	29471	38732	38732					0.027783825231722403
PVPDAPPQL	9	Unmodified	_PVPDAPPQL_					0	0	0			REV__ENST00000505322.5_1_1:2100378-2116445:+|nuORF	REV__ENST00000505322.5_1_1:2100378-2116445:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	467.255643	932.496732	-1.2185	-0.00056935	0.4799	0.00022424	-0.73861	-0.00034512	467.25569689090315	53.168	0.50929	53.919	53.638	54.147	0.75105	-0.013032	0.00019039	NaN	34.102	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1412600	+		39779	25533	29238	29471							0.027783825231722403
PVPGGGFL	8	Unmodified	_PVPGGGFL_					0	0	0		EPHA6|p.S830F|1|0.43|ENSG00000080224|chr3:97592714-97592714|C/T|missense_variant	EPHA6|p.S830F|1|0.43|ENSG00000080224|chr3:97592714-97592714|C/T|missense_variant	EPHA6|p.S830F|1|0.43|ENSG00000080224|chr3:97592714-97592714|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	372.60797119140625	2	372.207964	742.401375	0.44684	0.00016632	-0.35006	-0.0001303	0.096775	3.602E-05	372.20776729538903	77.382	0.81458	78.125	77.757	78.572	0.74293					25	15	2	0	0	0	0.77554	1	29376	29376		11.114	0	1	2287600			39780	13945	29239	29472	38733	38733					0.019870741228032784
PVPHSSDL	8	Unmodified	_PVPHSSDL_					0	0	0			REV__RBM33|p.N493D|1|0.31|ENSG00000184863|chr7:155738143-155738143|A/G|missense_variant	REV__RBM33|p.N493D|1|0.31|ENSG00000184863|chr7:155738143-155738143|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	425.954345703125	2	426.216517	850.418482	0.0032493	1.3849E-06	0.057612	2.4555E-05	0.060861	2.594E-05	426.21642040056133	44.212	0.40896	44.212	43.909	44.318	0					12	7	2	0	0	0	0.94479	1	15372	15372		8.5933	0	1	704260	+		39781	27874	29240	29473	38734	38734					-0.012710500620414678
PVPIYIEV	8	Unmodified	_PVPIYIEV_					0	0	0			REV__AP1M1|p.H313Y|1|0.68|ENSG00000072958|chr19:16228818-16228818|C/T|missense_variant	REV__AP1M1|p.H313Y|1|0.68|ENSG00000072958|chr19:16228818-16228818|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	465.1701965332031	2	465.270761	928.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.51	1	115.51	115.01	116.01	0								0	0	0	0.16876	1	42362	42362		2.5775	0	1		+		39782	15417	29241	29474	38735	38735					0.059847411883765744
PVPLTGPVL	9	Unmodified	_PVPLTGPVL_					0	0	0			REV__ENST00000379789.8_1_10:6275938-6276049:+|nuORF	REV__ENST00000379789.8_1_10:6275938-6276049:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	447.1784973144531	2	446.778754	891.542954	-0.35568	-0.00015891	-0.025923	-1.1582E-05	-0.38161	-0.00017049	446.77875026963886	108.11	0.7673	108.87	108.51	109.27	0.75436					23	14	2	0	0	0	0.69504	1	40891	40891		12.532	0	1	1331700	+		39783	24205	29242	29475	38736	38736					0.0928444742528427
PVPPPPRRRRR	11	Unmodified	_PVPPPPRRRRR_					0	0	0		nc|ENSG00000100918|O95072-2|REC8;ENSG00000100918|ENST00000611366|REC8	nc|ENSG00000100918|O95072-2|REC8	nc|ENSG00000100918|O95072-2|REC8	MULTI-SECPEP	A375_MHC_IP_R2	2	693.1810302734375	2	692.431453	1382.84835	-0.5993	-0.00041498	2.4317	0.0016838	1.8324	0.0012688	692.4311289928207	89.301	0.14928	90.033	89.936	90.085	0.7318					4	2	2	0	0	0	0.99881	1	33993	33993		1.4819	0	1	613150			39784	2232	29243	29476	38737	38737					0.17224276061847377
PVPRPQPQLR	10	Unmodified	_PVPRPQPQLR_					0	0	0		ENST00000368605.2_1_6:116783229-116784525:+|nuORF	ENST00000368605.2_1_6:116783229-116784525:+|nuORF	ENST00000368605.2_1_6:116783229-116784525:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	396.66064453125	3	396.571768	1186.69348	-0.25408	-0.00010076	0.19204	7.6159E-05	-0.062031	-2.46E-05	396.5718617693182	55.003	0.56065	55.754	55.523	56.084	0.75075					21	10	3	0	0	0	0.71946	1	20881	20881		3.5871	0	1	5034300			39785	11118	29244	29477	38738	38738					0.10759607136787963
PVPTHPAG	8	Unmodified	_PVPTHPAG_					0	0	0			REV__ENSG00000138617|ENST00000649807|PARP16	REV__ENSG00000138617|ENST00000649807|PARP16	MULTI-SECPEP	A375_MHC_IP_R2	2	388.390869140625	2	388.208495	774.402438	-0.45599	-0.00017702	0.34244	0.00013294	-0.11354	-4.4079E-05	388.2085492395157	61.01	0.70802	61.755	61.464	62.172	0.74504					18	13	2	0	0	0	0.91495	1	23035	23035		24.674	11.166	1	2029100	+		39786	19102	29245	29478	38739	38739					0.006212884917090378
PVPTHPAG	8	Unmodified	_PVPTHPAG_					0	0	0			REV__ENSG00000138617|ENST00000649807|PARP16	REV__ENSG00000138617|ENST00000649807|PARP16	MULTI-MATCH	A375_MHC_IP_R1	1		2	388.208495	774.402438	0.2406	9.3403E-05	0.34659	0.00013455	0.58719	0.00022795	388.2085037651853	61.797	0.56178	61.797	61.636	62.198	0	0.020857	1.5045E-06	NaN	24.674	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1531200	+		39787	19102	29245	29478							0.006212884917090378
PVQAPPAAL	9	Unmodified	_PVQAPPAAL_					0	0	0			REV__ENST00000272983.12_1_2:242089243-242089768:+|nuORF	REV__ENST00000272983.12_1_2:242089243-242089768:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	432.6528015136719	2	432.252903	862.491253	-0.24939	-0.0001078	-0.30673	-0.00013258	-0.55611	-0.00024038	432.25273500397117	75.559	0.66444	76.3	75.976	76.64	0.74052					30	12	3	0	0	0	0.1209	1	28673	28673		46.921	0	1	3465500	+		39788	23281	29246	29479	38740	38740					0.054507037313555884
PVQFRPEERYF	11	Unmodified	_PVQFRPEERYF_					0	0	0			REV__ENSG00000151790|ENST00000536354|TDO2	REV__ENSG00000151790|ENST00000536354|TDO2	MULTI-MSMS	A375_MHC_IP_R1	1	734.7692260742188	2	734.372601	1466.73065	-0.51266	-0.00037649	-0.9102	-0.00066842	-1.4229	-0.0010449	734.3716585382522	100.76	0.60745	100.76	100.43	101.04	0					26	11	3	0	0	0	0.72649	1	36984	36984		12.241	4.0851	1	3552700	+		39789	19775	29247	29480	38741	38741					0.015952338918850728
PVQFRPEERYF	11	Unmodified	_PVQFRPEERYF_					0	0	0			REV__ENSG00000151790|ENST00000536354|TDO2	REV__ENSG00000151790|ENST00000536354|TDO2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	734.372601	1466.73065	-0.51266	-0.00037649	-0.9102	-0.00066842	-1.4229	-0.0010449	734.3716585382522	100.76	0.60745	100.76	100.43	101.04	0	0.0045664	-3.8838E-05	NaN	12.241	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3552700	+		39790	19775	29247	29480							0.015952338918850728
PVRGPFPIIV	10	Unmodified	_PVRGPFPIIV_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-SECPEP	A375_MHC_IP_R2	2	548.2391357421875	2	547.839677	1093.6648	-0.74588	-0.00040862	0.22252	0.00012191	-0.52336	-0.00028672	547.8397052769125	103.85	0.60646	104.61	104.35	104.95	0.76428					19	11	2	0	0	0	0.78945	1	39321	39321		19.257	1.122	1	2441900		+	39791	582	29248	29481	38742	38742					0.12171489507659317
PVRITGPWNW	10	Unmodified	_PVRITGPWNW_					0	0	0			REV__ENST00000519884.1_1_8:22210459-22213015:+|nuORF	REV__ENST00000519884.1_1_8:22210459-22213015:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	408.9554138183594	3	409.220735	1224.64038	-0.15039	-6.1545E-05	-0.99068	-0.00040541	-1.1411	-0.00046695	409.22025297164646	47.393	0.92067	47.393	46.596	47.517	0					24	17	2	0	0	0	0.92603	1	16698	16698		8.9762	2.7419	1	1445600	+		39792	22269	29249	29482	38743	38743					0.03704229354138988
PVRKKRLPV	9	Unmodified	_PVRKKRLPV_					0	0	0			REV__nc|ENSG00000146122|Q86T65-4|DAAM2	REV__nc|ENSG00000146122|Q86T65-4|DAAM2	MULTI-MSMS	A375_MHC_IP_R1	1	364.95361328125	3	364.916987	1091.72913	0.26096	9.5228E-05	-0.18577	-6.779E-05	0.075191	2.7438E-05	364.91682552284817	40.737	0.20241	40.737	40.66	40.863	0					5	3	2	0	0	0	0.74768	1	14048	14048		2.7352	0	1	1116400	+		39793	19518	29250	29483	38744	38744					0.1869368938446314
PVRRKLKKKQK	11	Unmodified	_PVRRKLKKKQK_					0	0	0		ANK2|p.E1710K|1|0.13|ENSG00000145362|chr4:113353746-113353746|G/A|missense_variant	ANK2|p.E1710K|1|0.13|ENSG00000145362|chr4:113353746-113353746|G/A|missense_variant	ANK2|p.E1710K|1|0.13|ENSG00000145362|chr4:113353746-113353746|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	704.7605590820312	2	704.982987	1407.95142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.562	1	80.307	79.807	80.807	0.74474								0	0	0	0.16331	1	30194	30194		1.4819	1.0812	1				39794	133	29251	29484	38745	38745					0.26376343729816654
PVRSFLRWKLK	11	Unmodified	_PVRSFLRWKLK_					0	0	0			REV__ENSG00000172840|ENST00000311765|PDP2	REV__ENSG00000172840|ENST00000311765|PDP2	MSMS	A375_MHC_IP_R1	1	715.4522094726562	2	715.443163	1428.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.55	1	104.55	104.05	105.05	0								0	0	0	0.16331	1	38388	38388		1.4819	0.15237	1		+		39795	21175	29252	29485	38746	38746					0.17449277055811763
PVRSRSALHAV	11	Unmodified	_PVRSRSALHAV_					0	0	0			REV__nc|ENSG00000084112|Q8WYL5-4|SSH1	REV__nc|ENSG00000084112|Q8WYL5-4|SSH1	MULTI-SECPEP	A375_MHC_IP_R1	1	597.2489624023438	2	596.849096	1191.68364	-0.63566	-0.00037939	0.097078	5.7941E-05	-0.53858	-0.00032145	596.8491140812764	131.26	1.2147	131.26	130.72	131.93	0					32	23	2	0	0	0	0.99738	1	50689	50689		5.2969	2.0156	1	8062400	+		39796	16819	29253	29486	38747	38747					0.09546419131402217
PVSAESTRSLQ	11	Unmodified	_PVSAESTRSLQ_					0	0	0		nc|ENSG00000140464|P29590-9|PML	nc|ENSG00000140464|P29590-9|PML	nc|ENSG00000140464|P29590-9|PML	MSMS	A375_MHC_IP_R1	1	587.81689453125	2	587.806759	1173.59897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.551	1	88.551	88.051	89.051	0								0	0	0	0.16191	1	32510	32510		8.7454	0.58988	1				39797	14640	29254	29487	38748	38748					0.01911003804139
PVSKQSVY	8	Unmodified	_PVSKQSVY_					0	0	0			REV__ENSG00000103365|ENST00000309859|GGA2	REV__ENSG00000103365|ENST00000309859|GGA2	MULTI-MSMS	A375_MHC_IP_R2	2	455.1632995605469	2	454.247818	906.481082	-0.15189	-6.8996E-05	-0.047684	-2.166E-05	-0.19957	-9.0656E-05	454.24764852253026	46.127	0.50508	46.893	46.654	47.159	0.76519					16	9	3	0	0	0	0.74204	1	17222	17222		22.453	1.5814	1	2286900	+		39798	17274	29255	29488	38749	38749					0.02410096006144613
PVSLLEERKE	10	Unmodified	_PVSLLEERKE_					0	0	0			REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	MULTI-MSMS	A375_MHC_IP_R1	1	600.734619140625	2	600.335153	1198.65575	-0.17274	-0.0001037	-2.1839	-0.0013111	-2.3566	-0.0014148	600.8352400226859	127.95	0.75996	127.95	127.67	128.43	0					26	14	2	0	0	0	0.62155	1	49183	49183		19.257	2.1441	1	15295000	+		39799	27531	29256	29489	38750	38750					0.0643705136067183
PVSRRLSAW	9	Unmodified	_PVSRRLSAW_					0	0	0			REV__ENST00000419916.6_1_1:2519884-2520918:+|nuORF	REV__ENST00000419916.6_1_1:2519884-2520918:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	357.9449157714844	3	357.873447	1070.59851	-0.48549	-0.00017374	0.43389	0.00015528	-0.051599	-1.8466E-05	357.8735988214135	37.633	0.30766	38.407	38.175	38.483	0.77451					9	5	2	0	0	0	0.67483	1	13748	13748		6.6304	0	1	2016900	+		39800	24569	29257	29490	38751	38751					0.06603673665608767
PVSSLGQTWLP	11	Unmodified	_PVSSLGQTWLP_					0	0	0		chr7:43988247-43990095|472|49.33|0.14|8.48|-|0|UPK3BL3P,UPK3BL3P|2	chr7:43988247-43990095|472|49.33|0.14|8.48|-|0|UPK3BL3P,UPK3BL3P|2	chr7:43988247-43990095|472|49.33|0.14|8.48|-|0|UPK3BL3P,UPK3BL3P|2	MULTI-SECPEP	A375_MHC_IP_R2	2	396.2713317871094	3	395.548518	1183.62372	-0.15843	-6.2667E-05	2.3982	0.00094859	2.2397	0.00088593	395.5492594560774	32.231	0.25452	32.968	32.857	33.112	0.73691					5	4	2	0	0	0	0.98748	1	11441	11441		2.4348	0	1	607240			39801	502	29258	29491	38752	38752					0.03925683677516645
PVSVANRLL	9	Unmodified	_PVSVANRLL_					0	0	0		ENST00000465381.5_1_20:13514760-13610725:-|nuORF;ENST00000480436.5_1_20:13415759-13610725:-|nuORF;ENSG00000089123|ENST00000337743|TASP1	ENST00000465381.5_1_20:13514760-13610725:-|nuORF	ENST00000465381.5_1_20:13514760-13610725:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	485.1226806640625	2	484.798009	967.581465	-0.88073	-0.00042698	2.145	0.0010399	1.2642	0.0006129	484.7979156235361	71.51	0.35308	72.244	72.061	72.414	0.73421					9	6	2	0	0	0	0.52144	1	27190	27190		23.148	13.074	1	1638000			39802	1915	29259	29492	38753	38753					0.09637753059814713
PVTIPVPAPL	10	Unmodified	_PVTIPVPAPL_					0	0	0			REV__CIC|p.V442Gfs*2|1|0.14|ENSG00000079432|chr19:42289371-42289393|TCATCTGTGAGGAGGAAGGGGAT/-|frameshift_variant	REV__CIC|p.V442Gfs*2|1|0.14|ENSG00000079432|chr19:42289371-42289393|TCATCTGTGAGGAGGAAGGGGAT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	502.71343994140625	2	502.312961	1002.61137	-0.58258	-0.00029264	0.5009	0.00025161	-0.081682	-4.103E-05	502.31324052858895	85.705	0.30457	85.705	85.616	85.921	0					8	5	2	0	0	0	0.83086	1	31437	31437		10.824	0	1	1226200	+		39803	15791	29260	29493	38754	38754					0.11016692005136974
PVTTIQRAGGK	11	Unmodified	_PVTTIQRAGGK_					0	0	0		ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	MULTI-SECPEP	A375_MHC_IP_R2	2	377.2647705078125	3	376.555895	1126.64586	0.052206	1.9658E-05	0.15675	5.9027E-05	0.20896	7.8685E-05	376.55590720710865	37.836	0.4614	38.611	38.382	38.843	0.77451					12	8	2	0	0	0	0.99331	1	13816	13816		2.4348	2.4348	1	1843600			39804	10040	29261	29494	38755	38755					0.0875990814593024
PVTTIQRAGGK	11	Unmodified	_PVTTIQRAGGK_					0	0	0		ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	MULTI-MATCH	A375_MHC_IP_R1	1		3	376.555895	1126.64586	0.62237	0.00023436	0.76771	0.00028908	1.3901	0.00052344	376.556183292626	38.755	0.61017	38.755	38.423	39.033	0	0.07215	0.00047448	NaN	2.4348	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1487200			39805	10040	29261	29494							0.0875990814593024
PVVAMFRVV	9	Unmodified	_PVVAMFRVV_					0	0	0		ENST00000398868.7_1_11:63392322-63392604:-|nuORF	ENST00000398868.7_1_11:63392322-63392604:-|nuORF	ENST00000398868.7_1_11:63392322-63392604:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	508.6759338378906	2	509.29933	1016.58411	-0.68746	-0.00035013	0.22955	0.00011691	-0.45792	-0.00023322	509.2993881874619	108.88	0.61247	109.63	109.37	109.98	0.74684					18	11	2	0	0	0	0.69504	1	41134	41134		18.135	8.7875	1	4003100			39806	11528	29262	29495	38756	38756					0.07647885193114234
PVVDTILVKC	10	Unmodified	_PVVDTILVKC_					0	0	0		MAP3K1|p.T946Nfs*57|1|0.23|ENSG00000095015|chr5:56882036-56882037|AC/-|frameshift_variant;ENSG00000095015|ENST00000399503|MAP3K1	MAP3K1|p.T946Nfs*57|1|0.23|ENSG00000095015|chr5:56882036-56882037|AC/-|frameshift_variant	MAP3K1|p.T946Nfs*57|1|0.23|ENSG00000095015|chr5:56882036-56882037|AC/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	544.6527099609375	2	543.81501	1085.61547	-0.10554	-5.7396E-05	-2.7288	-0.001484	-2.8344	-0.0015414	543.8132362745847	127.04	0.20272	127.04	126.96	127.16	0					5	3	2	0	0	0	0.71944	1	48582	48582		3.5965	1.019	1	2515700			39807	2033	29263	29496	38757	38757					0.07608413436560113
PVVELYRPWTL	11	Unmodified	_PVVELYRPWTL_					0	0	0			REV__TOB2|p.F286Lfs*42|1|0.96|ENSG00000183864|chr22:41436488-41436488|A/-|frameshift_variant	REV__TOB2|p.F286Lfs*42|1|0.96|ENSG00000183864|chr22:41436488-41436488|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	687.2847900390625	2	686.884813	1371.75507	-0.57414	-0.00039437	-0.59068	-0.00040573	-1.1648	-0.0008001	686.8844293038758	102.5	0.45455	102.5	102.3	102.76	0					16	8	3	0	0	0	0.63737	1	37685	37685		20.415	3.3016	1	2301100	+		39808	28150	29264	29497	38758	38758					0.08406494045425461
PVVELYRPWTL	11	Unmodified	_PVVELYRPWTL_					0	0	0			REV__TOB2|p.F286Lfs*42|1|0.96|ENSG00000183864|chr22:41436488-41436488|A/-|frameshift_variant	REV__TOB2|p.F286Lfs*42|1|0.96|ENSG00000183864|chr22:41436488-41436488|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	687.2835693359375	2	686.884813	1371.75507	-0.57414	-0.00039437	-0.59068	-0.00040573	-1.1648	-0.0008001	686.8844293038758	102.5	0.45455	102.5	102.3	102.76	0					16	8	3	0	0	0	0.94168	1	37730	37730		10.8	8.301	1	2301100	+		39809	28150	29264	29497	38759	38759					0.08406494045425461
PVVGASQVPV	10	Unmodified	_PVVGASQVPV_					0	0	0		ENST00000585465.2_2_19:1226346-1226643:+|nuORF	ENST00000585465.2_2_19:1226346-1226643:+|nuORF	ENST00000585465.2_2_19:1226346-1226643:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	952.9326782226562	1	952.546208	951.538931	-0.08925	-8.5015E-05	0.79014	0.00075264	0.70089	0.00066763	952.5474830780419	133.01	0.20235	133.17	133.04	133.25	0.16487					5	3	2	0	0	0	0.93799	1	52281	52281		3.5965	0	1	2848100			39810	13718	29265	29498	38760	38760					0.061223579315765164
PVVGASQVPV	10	Unmodified	_PVVGASQVPV_					0	0	0		ENST00000585465.2_2_19:1226346-1226643:+|nuORF	ENST00000585465.2_2_19:1226346-1226643:+|nuORF	ENST00000585465.2_2_19:1226346-1226643:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	952.546208	951.538931	-0.21082	-0.00020082	0.65603	0.0006249	0.44521	0.00042408	952.5469188495904	133.23	0.15329	133.23	133.1	133.25	0	0.028167	-3.0872E-05	NaN	3.5965	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2168800			39811	13718	29265	29498							0.061223579315765164
PVVIVLPV	8	Unmodified	_PVVIVLPV_					0	0	0		ENST00000472828.1_1_2:179695251-179701862:-|nuORF	ENST00000472828.1_1_2:179695251-179701862:-|nuORF	ENST00000472828.1_1_2:179695251-179701862:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	835.102783203125	1	835.565152	834.557876	-0.74384	-0.00062153	-2.6266	-0.0021947	-3.3705	-0.0028162	835.560778170357	121.1	0.30354	121.54	121.47	121.77	0.44488					6	5	2	0	0	0	0.972	1	46351	46351		0.79363	0	1	20569000			39812	12379	29266	29499	38761	38761					0.13397939293270156
PVVSPKRLT	9	Unmodified	_PVVSPKRLT_					0	0	0		nc|ENSG00000166473|Q7Z442-6|PKD1L2	nc|ENSG00000166473|Q7Z442-6|PKD1L2	nc|ENSG00000166473|Q7Z442-6|PKD1L2	MSMS	A375_MHC_IP_R2	2	498.7112121582031	2	498.813659	995.612765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.73	1	141.76	141.26	142.26	0.030731								0	0	0	0.15486	1	55425	55425		2.0598	0	1				39813	14741	29267	29500	38762	38762					0.114783260938907
PVVTSWRSR	9	Unmodified	_PVVTSWRSR_					0	0	0		ENST00000352210.9_1_1:161138834-161138885:+|nuORF	ENST00000352210.9_1_1:161138834-161138885:+|nuORF	ENST00000352210.9_1_1:161138834-161138885:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	544.1763916015625	2	544.30399	1086.59343	-0.62257	-0.00033887	1.7786	0.00096811	1.156	0.00062924	544.3043487419316	76.1	0.909	76.1	75.815	76.724	0					30	17	2	0	0	0	0.73363	1	27694	27694		15.847	7.937	1	2430500			39814	10930	29268	29501	38763	38763					0.053593698029771986
PVWLFSPLL	9	Unmodified	_PVWLFSPLL_					0	0	0			REV__ENST00000286371.7_1_3:141595540-141622555:+|nuORF	REV__ENST00000286371.7_1_3:141595540-141622555:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	535.6941528320312	2	536.315503	1070.61645	-1.2529	-0.00067194	4.0207	0.0021564	2.7678	0.0014844	536.3185690842089	37.426	0.1545	38.197	38.12	38.275	0.7709					4	2	2	0	0	0	0.77834	1	13712	13712		4.756	0	1	610450	+		39815	23339	29269	29502	38764	38764					0.08396995867747137
PVYKKRWKN	9	Unmodified	_PVYKKRWKN_					0	0	0		nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3	nc|ENSG00000091490|Q68CR1-2|SEL1L3	nc|ENSG00000091490|Q68CR1-2|SEL1L3	MSMS	A375_MHC_IP_R1	1	406.6436462402344	3	406.90838	1217.70331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.083	1	72.083	71.583	72.583	0								0	0	0	0.15486	1	26215	26215		2.7352	0	1				39816	1980	29270	29503	38765	38765					0.10316795142171031
PVYRGGSAEH	10	Unmodified	_PVYRGGSAEH_					0	0	0			REV__ENSG00000173213|ENST00000308911|TUBB8B	REV__ENSG00000173213|ENST00000308911|TUBB8B	MSMS	A375_MHC_IP_R1	1	536.6943969726562	2	536.762155	1071.50976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.453	1	94.453	93.953	94.953	0								0	0	0	0.15435	1	34717	34717		6.7232	0	1		+		39817	21204	29271	29504	38766	38766					-0.02313786364720727
PWCSCYWYWW	10	Unmodified	_PWCSCYWYWW_					0	0	0			REV__ENST00000359165.5_1_12:19609713-19609968:-|nuORF	REV__ENST00000359165.5_1_12:19609713-19609968:-|nuORF	MSMS	A375_MHC_IP_R1	1	740.3229370117188	2	740.286094	1478.55763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.26	1	138.26	137.76	138.76	0								0	0	0	0.15629	1	53190	53190		0.40072	0.093686	1		+		39818	23872	29272	29505	38767	38767					-0.16250171760543708
PWEFDVFY	8	Unmodified	_PWEFDVFY_					0	0	0		ENSG00000111701|ENST00000229304|APOBEC1;APOBEC1|p.E19K|2|0.47|ENSG00000111701|chr12:7652825-7652825|C/T|missense_variant	ENSG00000111701|ENST00000229304|APOBEC1	ENSG00000111701|ENST00000229304|APOBEC1	MSMS	A375_MHC_IP_R1	1	551.6820678710938	2	551.74765	1101.48075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.587	1	74.587	74.087	75.087	0								0	0	0	0.16876	1	27168	27168		5.7604	0.52976	1				39819	3020	29273	29506	38768	38768					-0.06593323713718746
PWGLPAPPRA	10	Unmodified	_PWGLPAPPRA_					0	0	0			REV__ENST00000302850.9_1_19:7293933-7294017:-|nuORF	REV__ENST00000302850.9_1_19:7293933-7294017:-|nuORF	MSMS	A375_MHC_IP_R2	2	354.6133728027344	3	354.534543	1060.5818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.653	1	39.427	38.927	39.927	0.77451								0	0	0	0.15332	1	14243	14243		5.7834	0.88642	1		+		39820	23439	29274	29507	38769	38769					0.05393172779645283
PWHLGPNLI	9	Unmodified	_PWHLGPNLI_					0	0	0			REV__ENST00000602720.5_1_17:74035672-74035756:-|nuORF	REV__ENST00000602720.5_1_17:74035672-74035756:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	524.558837890625	2	523.792727	1045.5709	-0.21837	-0.00011438	0.70597	0.00036978	0.4876	0.0002554	524.2933597483512	92.693	0.25463	92.693	92.566	92.821	0					7	4	2	0	0	0	0.68216	1	34042	34042		8.5933	0	1	1424200	+		39821	26516	29275	29508	38770	38770					0.049937704053718335
PWICFGGSY	9	Unmodified	_PWICFGGSY_					0	0	0		ENSG00000112812|ENST00000230582|PRSS16	ENSG00000112812|ENST00000230582|PRSS16	ENSG00000112812|ENST00000230582|PRSS16	MULTI-MSMS	A375_MHC_IP_R2	2	515.6280517578125	2	515.228571	1028.44259	-0.97364	-0.00050165	0.28926	0.00014903	-0.68438	-0.00035261	515.2287063090318	62.106	0.60928	62.849	62.521	63.13	0.74263					17	11	2	0	0	0	0.3054	1	23528	23528		30.225	30.225	1	3368600			39822	3112	29276	29509	38771	38771					-0.07049532900009581
PWICFGGSY	9	Unmodified	_PWICFGGSY_					0	0	0		ENSG00000112812|ENST00000230582|PRSS16	ENSG00000112812|ENST00000230582|PRSS16	ENSG00000112812|ENST00000230582|PRSS16	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	515.228571	1028.44259	-0.41606	-0.00021437	0.90637	0.00046699	0.49031	0.00025262	515.228718369192	62.737	0.51218	62.737	62.454	62.966	0	-0.05602	0.00050842	NaN	30.225	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2750600			39823	3112	29276	29509							-0.07049532900009581
PWICFGGSY	9	Unmodified	_PWICFGGSY_					0	0	0		ENSG00000112812|ENST00000230582|PRSS16	ENSG00000112812|ENST00000230582|PRSS16	ENSG00000112812|ENST00000230582|PRSS16	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	515.228571	1028.44259	-0.97364	-0.00050165	0.28926	0.00014903	-0.68438	-0.00035261	515.2287063090318	62.106	0.60928	62.849	62.521	63.13	0.74263	0.05602	-0.00012749	NaN	30.225	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3368600			39824	3112	29276	29509							-0.07049532900009581
PWKSDRIWQQM	11	Unmodified	_PWKSDRIWQQM_					0	0	0		ENST00000521802.5_1_8:42112879-42123213:-|nuORF	ENST00000521802.5_1_8:42112879-42123213:-|nuORF	ENST00000521802.5_1_8:42112879-42123213:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	492.47760009765625	3	492.246844	1473.7187	-0.71532	-0.00035211	-0.89204	-0.0004391	-1.6074	-0.00079122	492.24684721336433	50.091	1.4712	50.845	50.244	51.715	0.75406					47	28	2	0	0	0	0.73318	1	18679	18679		5.8681	0.46543	1	4917600			39825	13014	29277	29510	38772	38772					0.0007929387704734836
PWLHMPSAMT	10	Unmodified	_PWLHMPSAMT_					0	0	0		ENST00000510556.1_1_4:109571811-109578607:+|nuORF;ENSG00000198856|ENST00000361564|OSTC;nc|ENSG00000198856|Q9NRP0-2|OSTC	ENST00000510556.1_1_4:109571811-109578607:+|nuORF	ENST00000510556.1_1_4:109571811-109578607:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	586.17578125	2	585.775362	1169.53617	-0.2637	-0.00015447	0.57204	0.00033509	0.30834	0.00018062	585.7757891742956	36.01	1.1187	36.01	35.676	36.795	0					47	21	3	0	0	0	0.78945	1	12045	12045		19.257	19.257	1	4707300			39826	9352	29278	29511	38773	38773					-0.04181556789262686
PWLIIAWLTF	10	Unmodified	_PWLIIAWLTF_					0	0	0			REV__ENST00000256722.9_2_2:7001351-7001417:-|nuORF	REV__ENST00000256722.9_2_2:7001351-7001417:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	630.7630615234375	2	630.362985	1258.71142	-0.60968	-0.00038432	0.92202	0.00058121	0.31234	0.00019689	630.3638412997916	83.281	1.3669	83.281	82.571	83.937	0					47	26	2	0	0	0	0.60556	1	30594	30594		20.454	2.0805	1	3871800	+		39827	23154	29279	29512	38774	38774					0.09240929338920978
PWLLKLAW	8	Unmodified	_PWLLKLAW_					0	0	0		ENSG00000167700|ENST00000301327|MFSD3;ENST00000528047.5_1_8:145734716-145735997:+|nuORF	ENSG00000167700|ENST00000301327|MFSD3	ENSG00000167700|ENST00000301327|MFSD3	MSMS	A375_MHC_IP_R1	1	513.7075805664062	2	513.810388	1025.60622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.16	1	145.16	144.66	145.66	0								0	0	0	0.16876	1	55652	55652		0.79363	0	1				39828	7213	29280	29513	38775	38775					0.0944443293317363
PWNPRRWWRWC	11	Unmodified	_PWNPRRWWRWC_					0	0	0		ENST00000564348.5_1_19:7982609-7983760:+|nuORF;ENST00000566166.1_1_19:7982552-7983971:+|nuORF	ENST00000564348.5_1_19:7982609-7983760:+|nuORF	ENST00000564348.5_1_19:7982609-7983760:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	822.8034057617188	2	821.901671	1641.78879	-0.60541	-0.00049758	0.46228	0.00037995	-0.14313	-0.00011764	821.9021446735346	94.276	0.50658	95.021	94.768	95.274	0.74474					27	9	4	0	0	0	0.73934	1	35821	35821		0	0	1	6377500			39829	13528	29281	29514	38776	38776					-0.00643362943833381
PWNSLVIED	9	Unmodified	_PWNSLVIED_					0	0	0		ENST00000547739.1_1_12:100972402-100972510:+|nuORF	ENST00000547739.1_1_12:100972402-100972510:+|nuORF	ENST00000547739.1_1_12:100972402-100972510:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	536.7141723632812	2	536.769114	1071.52368	-0.6618	-0.00035523	-2.8422	-0.0015256	-3.504	-0.0018808	536.7676922394597	103.15	1.3709	103.15	102.25	103.63	0					41	26	2	0	0	0	0.61998	1	37590	37590		13.906	1.3745	1	2637200			39830	13347	29282	29515	38777	38777					-0.00922553656278069
PWRKSRRSRRP	11	Unmodified	_PWRKSRRSRRP_					0	0	0		ENST00000593027.6_1_19:36036533-36038346:+|nuORF;ENST00000392204.6_1_19:36036533-36036719:+|nuORF	ENST00000593027.6_1_19:36036533-36038346:+|nuORF	ENST00000593027.6_1_19:36036533-36038346:+|nuORF	MSMS	A375_MHC_IP_R1	1	741.5631103515625	2	741.437267	1480.85998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.012	1	84.012	83.512	84.512	0								0	0	0	0.16337	1	30760	30760		1.1933	0.84271	1				39831	13821	29283	29516	38778	38778					0.13878473085173937
PWRWRWRRWR	10	Unmodified	_PWRWRWRRWR_					0	0	0		ENST00000253814.5_1_5:141488387-141511833:+|nuORF	ENST00000253814.5_1_5:141488387-141511833:+|nuORF	ENST00000253814.5_1_5:141488387-141511833:+|nuORF	MSMS	A375_MHC_IP_R2	2	821.0576171875	2	820.950344	1639.88614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.88	1	126.18	125.68	126.68	0.2951								0	0	0	0.15629	1	49179	49179		0.40072	0.40072	1				39832	10220	29284	29517	38779	38779					0.09178787047312653
PWWKQFWRWWK	11	Unmodified	_PWWKQFWRWWK_					0	0	0		chr12:54282823-54283812|100|241.53|0.0|24.53|+|1|HNRNPA1,HNRNPA1|1	chr12:54282823-54283812|100|241.53|0.0|24.53|+|1|HNRNPA1,HNRNPA1|1	chr12:54282823-54283812|100|241.53|0.0|24.53|+|1|HNRNPA1,HNRNPA1|1	MSMS	A375_MHC_IP_R1	1	578.6636352539062	3	578.63325	1732.87792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.63	1	100.63	100.13	101.13	0								0	0	0	0.1636	1	36987	36987		0	0	1				39833	413	29285	29518	38780	38780					0.040797952873390386
PWWKQFWRWWK	11	Unmodified	_PWWKQFWRWWK_					0	0	0		chr12:54282823-54283812|100|241.53|0.0|24.53|+|1|HNRNPA1,HNRNPA1|1	chr12:54282823-54283812|100|241.53|0.0|24.53|+|1|HNRNPA1,HNRNPA1|1	chr12:54282823-54283812|100|241.53|0.0|24.53|+|1|HNRNPA1,HNRNPA1|1	MULTI-MSMS	A375_MHC_IP_R2	2	578.6233520507812	3	578.63325	1732.87792	-0.13994	-8.0973E-05	-0.23473	-0.00013582	-0.37467	-0.0002168	578.6329965268745	64.399	0.35736	65.139	64.902	65.259	0.74023					12	6	2	0	0	0	0.73934	1	24357	24357		0	0	1	2357100			39834	413	29285	29518	38781	38781					0.040797952873390386
PWWKQFWRWWK	11	Unmodified	_PWWKQFWRWWK_					0	0	0		chr12:54282823-54283812|100|241.53|0.0|24.53|+|1|HNRNPA1,HNRNPA1|1	chr12:54282823-54283812|100|241.53|0.0|24.53|+|1|HNRNPA1,HNRNPA1|1	chr12:54282823-54283812|100|241.53|0.0|24.53|+|1|HNRNPA1,HNRNPA1|1	MSMS	A375_MHC_IP_R2	2	578.6635131835938	3	578.63325	1732.87792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.305	1	84.045	83.545	84.545	0.73962								0	0	0	0.1636	1	31663	31663		0	0	1				39835	413	29285	29518	38782	38782					0.040797952873390386
PWWKQFWRWWK	11	Unmodified	_PWWKQFWRWWK_					0	0	0		chr12:54282823-54283812|100|241.53|0.0|24.53|+|1|HNRNPA1,HNRNPA1|1	chr12:54282823-54283812|100|241.53|0.0|24.53|+|1|HNRNPA1,HNRNPA1|1	chr12:54282823-54283812|100|241.53|0.0|24.53|+|1|HNRNPA1,HNRNPA1|1	MSMS	A375_MHC_IP_R2	2	578.6174926757812	3	578.63325	1732.87792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.935	1	86.668	86.168	87.168	0.733								0	0	0	0.16358	1	32681	32681		0.094841	0.094841	1				39836	413	29285	29518	38783	38783					0.040797952873390386
PYAPFASSYL	10	Unmodified	_PYAPFASSYL_					0	0	0			REV__chrY:24793721-24794749|98|18.54|0.08|7.87|-|0|TE_info:L3,L3_dup28348,CR1,LINE,donor,+,24794749,24794819|DAZ3,None|3	REV__chrY:24793721-24794749|98|18.54|0.08|7.87|-|0|TE_info:L3,L3_dup28348,CR1,LINE,donor,+,24794749,24794819|DAZ3,None|3	MULTI-SECPEP	A375_MHC_IP_R2	2	558.68310546875	2	558.274032	1114.53351	-0.70433	-0.00039321	-1.5695	-0.00087623	-2.2739	-0.0012694	558.2730926479165	131.68	0.25323	131.87	131.75	132	0.18953					6	4	2	0	0	0	0.83086	1	51812	51812		21.747	2.3076	1	3138800	+		39837	15786	29286	29519	38784	38784					-0.019173656509110515
PYAVESYEPV	10	Unmodified	_PYAVESYEPV_					0	0	0			REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	577.09423828125	2	577.274229	1152.53391	-0.16626	-9.5975E-05	-0.048566	-2.8036E-05	-0.21482	-0.00012401	577.2741333203104	100.1	0.80988	100.1	99.825	100.63	0					28	15	2	0	0	0	0.83086	1	36888	36888		15.847	1.9411	1	6011300	+		39838	18819	29287	29520	38785	38785					-0.036259907217072396
PYAVESYEPV	10	Unmodified	_PYAVESYEPV_					0	0	0			REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MULTI-MSMS	A375_MHC_IP_R2	2	577.673828125	2	577.274229	1152.53391	0.017378	1.0032E-05	0.071655	4.1365E-05	0.089033	5.1397E-05	577.2739155217126	111.54	0.82124	112.27	111.95	112.77	0.72736					35	15	3	0	0	0	0.12876	1	42045	42045		57.471	21.344	1	3205300	+		39839	18819	29287	29520	38786	38786					-0.036259907217072396
PYAVESYEPV	10	Unmodified	_PYAVESYEPV_					0	0	0			REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	577.673828125	2	577.274229	1152.53391	-0.3578	-0.00020655	-0.25934	-0.00014971	-0.61713	-0.00035626	577.2740062102176	97.193	1.0156	97.949	97.569	98.585	0.75586					43	19	3	0	0	0	0.23966	1	36873	36873		60.39	8.7597	1	9869900	+		39840	18819	29287	29520	38787	38787					-0.036259907217072396
PYAVESYEPV	10	Unmodified	_PYAVESYEPV_					0	0	0			REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	577.274229	1152.53391	0.12597	7.2719E-05	0.053349	3.0797E-05	0.17932	0.00010352	577.274311028947	112.3	0.7122	112.3	111.98	112.69	0	0.017299	-6.0669E-06	NaN	57.471	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3359800	+		39841	18819	29287	29520							-0.036259907217072396
PYCDVKYDF	9	Unmodified	_PYCDVKYDF_					0	0	0		ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MSMS	A375_MHC_IP_R2	2	575.2265625	2	575.2497	1148.48485	0.071227	4.0974E-05	-4.4631	-0.0025674	-4.3919	-0.0025264	575.745943314055	95.04	0.45959	95.791	95.633	96.093	0.75045					17	8	3	0	0	0	0.62719	1	36147	36147		13.508	4.1604	1	1542900			39842	4781	29288	29521	38788	38788					-0.08345602282315667
PYEDPFGPSY	10	Unmodified	_PYEDPFGPSY_					0	0	0			REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	MULTI-MSMS	A375_MHC_IP_R2	2	586.6987915039062	2	586.250754	1170.48696	-0.41395	-0.00024268	0.35249	0.00020665	-0.061464	-3.6033E-05	586.2509541647779	101.12	0.56102	101.88	101.65	102.21	0.76428					16	10	2	0	0	0	0.69306	1	38353	38353		13.906	7.1829	1	2418700	+		39843	15922	29289	29522	38789	38789					-0.09146850272827578
PYEKWTASQWF	11	Unmodified	_PYEKWTASQWF_					0	0	0			REV__nc|ENSG00000162631|Q9Y2I2-2|NTNG1;REV__ENST00000477948.1_1_1:107866915-107871621:+|nuORF	REV__nc|ENSG00000162631|Q9Y2I2-2|NTNG1	MULTI-MSMS	A375_MHC_IP_R1	1	481.962646484375	3	481.562827	1441.66665	-0.56048	-0.00026991	3.158	0.0015208	2.5975	0.0012509	481.56475851511743	19.293	0.23279	19.293	19.238	19.471	0					7	4	2	0	0	0	0.73078	2	4765	4765;4801		4.1166	0.52395	1	14274000	+		39844	20281;25203	29290	29523	38790;38791	38790					-0.03651546265086836
PYESGPLEEF	10	Unmodified	_PYESGPLEEF_					0	0	0		ENSG00000184381|ENST00000332509|PLA2G6;nc|ENSG00000184381|O60733-2|PLA2G6;ENST00000496409.1_1_22:38511815-38516980:-|nuORF	ENSG00000184381|ENST00000332509|PLA2G6	ENSG00000184381|ENST00000332509|PLA2G6	MSMS	A375_MHC_IP_R1	1	584.197509765625	2	584.263862	1166.51317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.873	1	48.873	48.373	49.373	0								0	0	0	0.14862	1	17263	17263		20.454	7.9221	1				39845	8579	29291	29524	38792	38792					-0.063425811013758
PYETQSDSFY	10	Unmodified	_PYETQSDSFY_					0	0	0		ENSG00000109103|ENST00000335765|UNC119;ENST00000301032.8_1_17:26874317-26874539:-|nuORF	ENSG00000109103|ENST00000335765|UNC119	ENSG00000109103|ENST00000335765|UNC119	MULTI-SECPEP	A375_MHC_IP_R2	2	618.3087768554688	2	618.756401	1235.49825	-0.59466	-0.00036795	0.40219	0.00024886	-0.19247	-0.00011909	618.75414762077	84.307	0.20399	85.047	84.92	85.124	0.73962					5	3	2	0	0	0	0.92389	1	32053	32053		11.64	6.8843	1	617190			39846	2855	29292	29525	38793	38793					-0.11008072969366367
PYFSKLLLNL	10	Unmodified	_PYFSKLLLNL_					0	0	0		ENSG00000092036|ENST00000541587|HAUS4;nc|ENSG00000092036|Q9H6D7-4|HAUS4;ENST00000554651.5_1_14:23417204-23426210:-|nuORF;nc|ENSG00000092036|Q9H6D7-2|HAUS4;ENST00000554373.5_1_14:23417204-23426142:-|nuORF;ENST00000554446.5_1_14:23416818-23424363:-|nuORF;ENST00000554349.5_1_14:23417204-23426210:-|nuORF	ENSG00000092036|ENST00000541587|HAUS4	ENSG00000092036|ENST00000541587|HAUS4	MULTI-MSMS	A375_MHC_IP_R1	1	604.757568359375	2	604.357899	1206.70125	-0.69597	-0.00042061	0.58142	0.00035139	-0.11454	-6.9225E-05	604.3580922305201	140.11	0.7701	140.11	139.83	140.6	0					51	14	5	0	0	0	0.72416	1	53792	53792		1.4819	0	1	132830000			39847	1991	29293	29526	38794	38794					0.10616321613724722
PYFTAFVY	8	Unmodified	_PYFTAFVY_					0	0	0		nc|ENSG00000113749|P25021|HRH2;nc|ENSG00000113749|P25021-2|HRH2;ENSG00000113749|ENST00000636584|HRH2	nc|ENSG00000113749|P25021|HRH2	nc|ENSG00000113749|P25021|HRH2	MSMS	A375_MHC_IP_R2	2	504.18743896484375	2	504.247286	1006.48002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.002	1	44.771	44.271	45.271	0.7691								0	0	0	0.16876	1	16412	16412		9.3474	1.7385	1				39848	3181	29294	29527	38795	38795					-0.022961183627671744
PYFWFLMIFQE	11	Unmodified	_PYFWFLMIFQE_					0	0	0		ENST00000545729.5_1_12:26092425-26109253:-|nuORF;ENST00000500276.6_1_12:26108085-26109253:-|nuORF	ENST00000545729.5_1_12:26092425-26109253:-|nuORF	ENST00000545729.5_1_12:26092425-26109253:-|nuORF	MSMS	A375_MHC_IP_R1	1	507.6467590332031	3	507.580941	1519.72099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.585	1	52.585	52.085	53.085	0								0	0	0	0.16332	1	18707	18707		1.4551	0	1				39849	12776	29295	29528	38796	38796					-0.018076704378700015
PYGPSDRNYD	10	Unmodified	_PYGPSDRNYD_					0	0	0			REV__ENSG00000196628|ENST00000354452|TCF4	REV__ENSG00000196628|ENST00000354452|TCF4	MULTI-SECPEP	A375_MHC_IP_R1	1	395.92144775390625	3	395.171999	1182.49417	0.011385	4.4992E-06	0.15435	6.0993E-05	0.16573	6.5493E-05	395.17208548661284	25.112	0.35489	25.112	25.002	25.357	0					10	6	2	0	0	0	0.93615	1	7331	7331		1.9064	0.31409	1	2759500	+		39850	22214	29296	29529	38797	38797					-0.08978117672427288
PYHGVGAPL	9	Unmodified	_PYHGVGAPL_					0	0	0		ENST00000470714.5_1_7:99933771-99935846:+|nuORF	ENST00000470714.5_1_7:99933771-99935846:+|nuORF	ENST00000470714.5_1_7:99933771-99935846:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	456.1429138183594	2	455.742702	909.470852	-0.12834	-5.849E-05	0.063321	2.8858E-05	-0.065019	-2.9632E-05	455.74269250826165	62.634	0.66639	62.634	62.351	63.018	0					17	12	2	0	0	0	0.73662	1	22655	22655		9.3474	9.3474	1	1754600			39851	12343	29297	29530	38798	38798					0.012495330715751152
PYHLLHLKIDV	11	Unmodified	_PYHLLHLKIDV_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.R7429Ifs*19|1|0.07|ENSG00000131018|chr6:152214911-152214966|TCTTTCTGTAGTCTGAGAGGAGATCAGAGACCAATGGCGGTTCAGATTCTGCATTC/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-10|SYNE1;nc|ENSG00000131018|Q8NF91-6|SYNE1;nc|ENSG00000131018|Q8NF91-5|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MSMS	A375_MHC_IP_R2	2	674.3898315429688	2	674.392805	1346.77106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.4	1	122.78	122.28	123.28	0.3766								0	0	0	0.15016	1	46901	46901		20.415	9.615	1				39852	4300	29298	29531	38799	38799					0.11154200282317106
PYHLRLLRGI	10	Unmodified	_PYHLRLLRGI_					0	0	0			REV__chr1:11957943-11958591|223|22.31|0.38|5.86|+|0|PLOD1,None|1	REV__chr1:11957943-11958591|223|22.31|0.38|5.86|+|0|PLOD1,None|1	MULTI-MSMS	A375_MHC_IP_R2	2	619.3392333984375	2	619.380032	1236.74551	-0.65849	-0.00040786	-0.15003	-9.2926E-05	-0.80852	-0.00050078	619.3799698396497	83.386	0.76358	84.126	83.848	84.611	0.73962					34	14	4	0	0	0	0.72574	1	31796	31796		1.8442	1.8442	1	10785000	+		39853	15661	29299	29532	38800	38800					0.136607705505412
PYHRLNLDYER	11	Unmodified	_PYHRLNLDYER_					0	0	0		DLG5|p.P186L|1|0.8|ENSG00000151208|chr10:77854350-77854350|G/A|missense_variant	DLG5|p.P186L|1|0.8|ENSG00000151208|chr10:77854350-77854350|G/A|missense_variant	DLG5|p.P186L|1|0.8|ENSG00000151208|chr10:77854350-77854350|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	492.64288330078125	3	492.584513	1474.73171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.752	1	28.431	27.931	28.931	0.67857								0	0	0	0.16172	1	9523	9523		9.7643	5.0483	1				39854	753	29300	29533	38801	38801					0.013334482607660902
PYIEACCEY	9	Unmodified	_PYIEACCEY_					0	0	0			REV__nc|ENSG00000101204|P43681-2|CHRNA4	REV__nc|ENSG00000101204|P43681-2|CHRNA4	MSMS	A375_MHC_IP_R2	2	545.7239379882812	2	545.714636	1089.41472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.761	1	83.504	83.004	84.004	0.74293								0	0	0	0.15486	1	31441	31441		5.2307	0	1		+		39855	17149	29301	29534	38802	38802					-0.1264122394243259
PYKIKDTYLFQ	11	Unmodified	_PYKIKDTYLFQ_					0	0	0			REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF	REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	472.6581726074219	3	472.590494	1414.74965	-0.74442	-0.00035181	-0.26101	-0.00012335	-1.0054	-0.00047516	472.59030956744493	30.453	0.9597	30.453	30.2	31.16	0					40	18	3	0	0	0	0.72513	1	9825	9825		13.535	6.0579	1	2185500	+		39856	17035	29302	29535	38803	38803					0.05886770462939239
PYKIKDTYLFQ	11	Unmodified	_PYKIKDTYLFQ_					0	0	0			REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF	REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	473.323974609375	3	472.590494	1414.74965	-0.74442	-0.00035181	-0.26101	-0.00012335	-1.0054	-0.00047516	472.59030956744493	30.453	0.9597	30.453	30.2	31.16	0					40	18	3	0	0	0	0.94804	1	9748	9748		23.016	23.016	1	2185500	+		39857	17035	29302	29535	38804	38804					0.05886770462939239
PYKIKDTYLFQ	11	Unmodified	_PYKIKDTYLFQ_					0	0	0			REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF	REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	472.9896545410156	3	472.590494	1414.74965	-1.0017	-0.00047337	-0.39077	-0.00018467	-1.3924	-0.00065804	472.59023342107685	29.864	0.96143	30.563	30.083	31.044	0.69872					30	18	2	0	0	0	0.71778	1	10489	10489		14.171	4.927	1	5991200	+		39858	17035	29302	29535	38805	38805					0.05886770462939239
PYKLLHLVW	9	Unmodified	_PYKLLHLVW_					0	0	0		ENSG00000124422|ENST00000261497|USP22;nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000273820|ENST00000621775|USP27X	ENSG00000124422|ENST00000261497|USP22	ENSG00000124422|ENST00000261497|USP22	MULTI-MSMS	A375_MHC_IP_R2	2	390.61712646484375	3	390.234093	1167.68045	-0.044523	-1.7374E-05	1.5188	0.0005927	1.4743	0.00057532	390.2345057485836	101.12	0.46085	101.89	101.65	102.11	0.76428					10	8	2	0	0	0	0.74477	1	38278	38278		2.9952	1.7804	1	618530			39859	3899	29303	29536	38806	38806					0.1033177602471369
PYLMDFYFLYF	11	Unmodified	_PYLMDFYFLYF_					0	0	0			REV__SPDEF|p.S61F|1|0.57|ENSG00000124664|chr6:34544274-34544274|G/A|missense_variant	REV__SPDEF|p.S61F|1|0.57|ENSG00000124664|chr6:34544274-34544274|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	759.8552856445312	2	759.854332	1517.69411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.4	1	144.43	143.93	144.93	0.024414								0	0	0	0.16353	1	56407	56407		0.35063	0	1		+		39860	28029	29304	29537	38807	38807					-0.044027790490190455
PYLVRRSRKRH	11	Unmodified	_PYLVRRSRKRH_					0	0	0			REV__ENSG00000137331|ENST00000259874|IER3	REV__ENSG00000137331|ENST00000259874|IER3	MSMS	A375_MHC_IP_R1	1	734.4642944335938	2	734.442018	1466.86948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.56	1	125.56	125.06	126.06	0								0	0	0	0.1629	1	47833	47833		3.5965	0.31518	1		+		39861	19000	29305	29538	38808	38808					0.15472241370730444
PYLYKLYQHYY	11	Unmodified	_PYLYKLYQHYY_					0	0	0		ENSG00000182544|ENST00000329548|MFSD5;nc|ENSG00000182544|Q6N075-2|MFSD5	ENSG00000182544|ENST00000329548|MFSD5	ENSG00000182544|ENST00000329548|MFSD5	MSMS	A375_MHC_IP_R1	1	517.6505737304688	3	517.594127	1549.76055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.992	1	27.992	27.492	28.492	0								0	0	0	0.16301	1	8572	8572		3.0723	1.7426	1				39862	8416	29306	29539	38809	38809					0.007661728372340804
PYMLTEKQAVP	11	Unmodified	_PYMLTEKQAVP_					0	0	0			REV__ENSG00000050030|ENST00000055682|NEXMIF	REV__ENSG00000050030|ENST00000055682|NEXMIF	MULTI-MSMS	A375_MHC_IP_R1	1	639.2673950195312	2	638.833931	1275.65331	-0.76022	-0.00048565	-3.9909	-0.0025495	-4.7511	-0.0030352	638.8317764986823	76.91	0.30806	76.91	76.724	77.032	0					9	5	2	0	0	0	0.72949	1	28077	28077		9.3831	1.473	1	1711900	+		39863	16384	29307	29540	38810	38810					0.0265087963134647
PYNLYGYNF	9	Unmodified	_PYNLYGYNF_					0	0	0		nc|ENSG00000092607|Q96SF7-2|TBX15;ENSG00000092607|ENST00000369429|TBX15	nc|ENSG00000092607|Q96SF7-2|TBX15	nc|ENSG00000092607|Q96SF7-2|TBX15	MULTI-MSMS	A375_MHC_IP_R1	1	576.21435546875	2	575.763832	1149.51311	0.23742	0.0001367	1.0171	0.0005856	1.2545	0.0007223	575.7643433492135	48.609	0.60746	48.609	48.375	48.983	0					25	11	3	0	0	0	0.6898	1	17258	17258		7.9102	0	1	6831600			39864	2009	29308	29541	38811	38811					-0.05566536310720949
PYPPPPER	8	Unmodified	_PYPPPPER_					0	0	0			REV__nc|ENSG00000156795|Q96HA8-2|NTAQ1	REV__nc|ENSG00000156795|Q96HA8-2|NTAQ1	MULTI-SECPEP	A375_MHC_IP_R1	1	477.16265869140625	2	476.747985	951.481417	-0.5763	-0.00027475	0.34409	0.00016404	-0.23221	-0.00011071	476.74803906534993	76.323	0.65702	76.323	76.067	76.724	0					18	12	2	0	0	0	0.95327	1	27840	27840		17.087	2.2483	1	1190300	+		39865	19997	29309	29542	38812	38812					0.0037351572599391147
PYQFRLMGPG	10	Unmodified	_PYQFRLMGPG_					0	0	0		nc|ENSG00000293458|O60774|FMO6P	nc|ENSG00000293458|O60774|FMO6P	nc|ENSG00000293458|O60774|FMO6P	MULTI-MSMS	A375_MHC_IP_R1	1	584.1968994140625	2	583.294776	1164.575	0.043931	2.5625E-05	-0.7873	-0.00045923	-0.74337	-0.0004336	583.2931413888626	49.632	1.2751	49.632	49.184	50.459	0					40	24	3	0	0	0	0.65248	1	17528	17528		16.942	16.942	1	3149400			39866	14965	29310	29543	38813	38813					-0.0007050816323044273
PYQFYAEDCME	11	Unmodified	_PYQFYAEDCME_					0	0	0		nc|ENSG00000196358|Q96CW9-2|NTNG2;ENSG00000196358|ENST00000393229|NTNG2	nc|ENSG00000196358|Q96CW9-2|NTNG2	nc|ENSG00000196358|Q96CW9-2|NTNG2	MULTI-MSMS	A375_MHC_IP_R2	2	698.666259765625	2	698.265221	1394.51589	-0.70446	-0.0004919	1.0105	0.00070561	0.30606	0.00021371	698.2668888482743	75.653	0.56158	76.394	76.129	76.691	0.74052					29	10	4	0	0	0	0.73189	1	28746	28746		7.1017	3.5052	1	4285100			39867	9029	29311	29544	38814	38814					-0.16558817030386308
PYRLIPEAQY	10	Unmodified	_PYRLIPEAQY_					0	0	0			REV__ENST00000593587.5_1_19:41771040-41778038:+|nuORF	REV__ENST00000593587.5_1_19:41771040-41778038:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	625.7312622070312	2	625.332413	1248.65027	-0.59612	-0.00037277	-2.0645	-0.001291	-2.6606	-0.0016638	625.3331275100071	64.689	0.45789	64.689	64.393	64.851	0					14	8	3	0	0	0	0.71245	1	23456	23456		6.7232	0	1	1181900	+		39868	23224	29312	29545	38815	38815					0.035893725688538325
PYRLQTFHPA	10	Unmodified	_PYRLQTFHPA_					0	0	0		SUN2|p.G237R|1|0.47|ENSG00000100242|chr22:38745788-38745788|C/T|missense_variant	SUN2|p.G237R|1|0.47|ENSG00000100242|chr22:38745788-38745788|C/T|missense_variant	SUN2|p.G237R|1|0.47|ENSG00000100242|chr22:38745788-38745788|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	615.7249145507812	2	615.324922	1228.63529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.416	1	75.154	74.654	75.654	0.73752								0	0	0	0.1524	1	28247	28247		13.042	2.2185	1				39869	29271	29313	29546	38816	38816					0.030119254915234706
PYVWFRFIFI	10	Unmodified	_PYVWFRFIFI_					0	0	0		tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1	tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1	tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1	MSMS	A375_MHC_IP_R1	1	694.2901000976562	2	694.381709	1386.74886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.92	1	137.92	137.42	138.42	0								0	0	0	0.15417	1	53073	53073		7.2892	0.18751	1				39870	29835	29314	29547	38817	38817					0.07096020604558362
PYVYQLTTRPV	11	Unmodified	_PYVYQLTTRPV_					0	0	0		ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	669.2661743164062	2	668.86662	1335.71869	-0.94075	-0.00062924	0.40039	0.00026781	-0.54036	-0.00036143	668.8668771300488	140.13	0.35735	140.13	139.88	140.23	0					10	6	2	0	0	0	0.99921	1	53839	53839		1.3295	0	1	1234800			39871	2837	29315	29548	38818	38818					0.06425617148670426
PYWWLSSWWPW	11	Unmodified	_PYWWLSSWWPW_					0	0	0		nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-3|PPAN	MULTI-MSMS	A375_MHC_IP_R1	1	797.1963500976562	2	797.36933	1592.72411	-0.57901	-0.00046168	2.5465	0.0020305	1.9675	0.0015688	797.8729168176869	94.901	0.61137	94.901	94.548	95.16	0					17	11	2	0	0	0	0.7359	1	34897	34897		3.2813	1.9518	1	1262300			39872	14602	29316	29549	38819	38819					-0.048546592688353485
PYWWLSSWWPW	11	Unmodified	_PYWWLSSWWPW_					0	0	0		nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-3|PPAN	MULTI-MATCH	A375_MHC_IP_R2	2		2	797.36933	1592.72411	-0.7352	-0.00058623	2.6001	0.0020732	1.8649	0.001487	797.3700618296639	94.274	0.40593	95.019	94.767	95.173	0.74473	0.05879	5.203E-05	NaN	3.2813	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1201800			39873	14602	29316	29549							-0.048546592688353485
PYYNYYDTYER	11	Unmodified	_PYYNYYDTYER_					0	0	0		ENSG00000113083|ENST00000231004|LOX	ENSG00000113083|ENST00000231004|LOX	ENSG00000113083|ENST00000231004|LOX	MSMS	A375_MHC_IP_R1	1	773.8265991210938	2	773.827889	1545.64122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.519	1	85.519	85.019	86.019	0								0	0	0	0.16331	1	31342	31342		1.4819	0	1				39874	3124	29317	29550	38820	38820					-0.10977065578163092
QAADIAEALY	10	Unmodified	_QAADIAEALY_					0	0	0		EBF2|p.R394Q|3|0.44|ENSG00000221818|chr8:25861210-25861210|C/T|missense_variant	EBF2|p.R394Q|3|0.44|ENSG00000221818|chr8:25861210-25861210|C/T|missense_variant	EBF2|p.R394Q|3|0.44|ENSG00000221818|chr8:25861210-25861210|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	532.6649169921875	2	532.766571	1063.51859	-0.93474	-0.000498	0.67782	0.00036112	-0.25692	-0.00013688	532.7671991684748	26.076	1.4133	26.076	25.714	27.128	0					42	27	2	0	0	0	0.70496	1	7944	7944		10.074	0.72649	1	3979400			39875	816	29318	29551	38821	38821					-0.010628575189002731
QAAEIHATW	9	Unmodified	_QAAEIHATW_					0	0	0		ENST00000424300.5_1_3:49129835-49130708:-|nuORF	ENST00000424300.5_1_3:49129835-49130708:-|nuORF	ENST00000424300.5_1_3:49129835-49130708:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	514.4595947265625	2	513.753798	1025.49304	-0.71787	-0.00036881	0.52469	0.00026956	-0.19318	-9.9246E-05	513.7540042948955	45.944	0.60546	46.709	46.403	47.008	0.76518					22	11	3	0	0	0	0.20567	1	17146	17146		30.637	7.4881	1	4914500			39876	11770	29319	29552	38822	38822					-0.01868287250681533
QAAIARLF	8	Unmodified	_QAAIARLF_					0	0	0		ENST00000256015.4_1_12:92539441-92539582:-|nuORF	ENST00000256015.4_1_12:92539441-92539582:-|nuORF	ENST00000256015.4_1_12:92539441-92539582:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	445.666259765625	2	445.266345	888.518136	-0.050291	-2.2393E-05	-0.46913	-0.00020889	-0.51942	-0.00023128	445.26604876701396	75.186	0.55603	75.186	74.908	75.464	0					23	10	3	0	0	0	0.74945	1	27377	27377		20.454	8.8133	1	2449200			39877	10234	29320	29553	38823	38823					0.06941812342552112
QAAIARLF	8	Unmodified	_QAAIARLF_					0	0	0		ENST00000256015.4_1_12:92539441-92539582:-|nuORF	ENST00000256015.4_1_12:92539441-92539582:-|nuORF	ENST00000256015.4_1_12:92539441-92539582:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	445.6661071777344	2	445.266345	888.518136	-0.39223	-0.00017465	0.28967	0.00012898	-0.10257	-4.5669E-05	445.26630935197613	74.195	0.50754	74.933	74.655	75.163	0.73752					16	9	2	0	0	0	0.7256	2	28146	28146;28191		26.884	9.9414	1	3205500			39878	10234	29320	29553	38824;38825	38824					0.06941812342552112
QADEDNCGDN	10	Unmodified	_QADEDNCGDN_					0	0	0		nc|ENSG00000171509|Q9HBX9-4|RXFP1;ENSG00000171509|ENST00000307765|RXFP1;nc|ENSG00000171509|Q9HBX9-3|RXFP1	nc|ENSG00000171509|Q9HBX9-4|RXFP1	nc|ENSG00000171509|Q9HBX9-4|RXFP1	MSMS	A375_MHC_IP_R2	2	540.6610107421875	2	540.680367	1079.34618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.926	1	74.664	74.164	75.164	0.73752								0	0	0	0.15158	1	28060	28060		14.838	11.949	1				39879	7612	29321	29554	38826	38826					-0.19031796988588212
QADFSVLHY	9	Unmodified	_QADFSVLHY_					0	0	0		nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	MULTI-MSMS	A375_MHC_IP_R1	1	540.6610107421875	2	540.261456	1078.50836	-0.63672	-0.00034399	-0.57447	-0.00031036	-1.2112	-0.00065436	540.2609401792753	74.697	0.81186	74.697	74.4	75.211	0					24	15	3	0	0	0	0.026268	1	27205	27205		78.149	49.068	1	2953600			39880	2592	29322	29555	38827	38827					-0.027754204534630844
QADFSVLHY	9	Unmodified	_QADFSVLHY_					0	0	0		nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	MULTI-SECPEP	A375_MHC_IP_R2	2	540.6610107421875	2	540.261456	1078.50836	-0.84115	-0.00045444	-0.62247	-0.0003363	-1.4636	-0.00079074	540.260746469171	73.911	0.91594	74.649	74.449	75.365	0.73752					21	17	2	0	0	0	0.39388	1	28060	28060		39.957	23.015	1	2910500			39881	2592	29322	29555	38828	38828					-0.027754204534630844
QADIARMLY	9	Unmodified	_QADIARMLY_					0	0	0		nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	MULTI-SECPEP	A375_MHC_IP_R1	1	541.3624267578125	2	540.778959	1079.54336	-0.62609	-0.00033857	-0.85116	-0.00046029	-1.4772	-0.00079886	540.779034882432	74.899	1.014	74.899	74.146	75.16	0					35	19	3	0	0	0	0.10535	1	27326	27326		92.653	52.205	1	4190600			39882	1033	29323	29556	38829	38829					0.006774990828262162
QADIARMLY	9	Unmodified	_QADIARMLY_					0	0	0		nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	MULTI-MSMS	A375_MHC_IP_R2	2	541.329833984375	2	540.778959	1079.54336	-0.85233	-0.00046092	-0.50529	-0.00027325	-1.3576	-0.00073417	540.778868370668	74.205	0.91772	74.943	74.296	75.214	0.73752					39	17	3	0	0	0	0.042871	1	28109	28109		72.968	40.662	1	5360100			39883	1033	29323	29556	38830	38830					0.006774990828262162
QADIARMLY	9	Oxidation (M)	_QADIARM(Oxidation (M))LY_		QADIARM(1)LY		QADIARM(120)LY	0	0	1		nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	MULTI-SECPEP	A375_MHC_IP_R1	1	549.1761474609375	2	548.776416	1095.53828	-0.48231	-0.00026468	-0.59383	-0.00032588	-1.0761	-0.00059056	548.7753388945276	50.159	0.97091	50.159	49.743	50.713	0					29	18	3	0	0	0	0.011191	1	17772	17772		121.53	58.961	1	4968600			39884	1033	29323	29557	38831	38831		8			-0.0056680477980535215
QADIARMLY	9	Oxidation (M)	_QADIARM(Oxidation (M))LY_		QADIARM(1)LY		QADIARM(110)LY	0	0	1		nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	MULTI-SECPEP	A375_MHC_IP_R2	2	549.1755981445312	2	548.776416	1095.53828	-1.0605	-0.00058196	0.023687	1.2999E-05	-1.0368	-0.00056896	548.7763646082258	49.464	0.40353	50.221	49.894	50.297	0.75737					14	7	2	0	0	0	0.013591	1	18577	18577		106.94	55.31	1	5220700			39885	1033	29323	29557	38832	38832		8			-0.0056680477980535215
QADLINELY	9	Unmodified	_QADLINELY_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MULTI-SECPEP	A375_MHC_IP_R1	1	540.174560546875	2	539.774396	1077.53424	-0.47826	-0.00025815	0.39739	0.0002145	-0.080864	-4.3648E-05	539.7745631856789	106.35	0.76701	106.35	105.96	106.73	0					31	14	3	0	0	0	0.1952	1	38992	38992		75.761	27.415	1	7000000			39886	7484	29324	29558	38833	38833					-0.0014257100183385774
QADLINELY	9	Unmodified	_QADLINELY_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MULTI-SECPEP	A375_MHC_IP_R2	2	540.1741333007812	2	539.774396	1077.53424	-0.83267	-0.00044945	0.21809	0.00011772	-0.61458	-0.00033173	539.7745263910911	105.54	0.86602	106.3	105.87	106.73	0.75977					32	16	3	0	0	0	0.1952	1	39881	39881		66.457	0	1	5386600			39887	7484	29324	29558	38834	38834					-0.0014257100183385774
QADPDVLHNSY	11	Unmodified	_QADPDVLHNSY_					0	0	0		ENSG00000116685|ENST00000376572|KIAA2013;nc|ENSG00000116685|Q8IYS2-2|KIAA2013	ENSG00000116685|ENST00000376572|KIAA2013	ENSG00000116685|ENST00000376572|KIAA2013	MULTI-MSMS	A375_MHC_IP_R2	2	630.1874389648438	2	629.788566	1257.56258	-0.74855	-0.00047143	-0.11897	-7.4928E-05	-0.86753	-0.00054636	629.788449536694	42.462	1.3208	43.234	42.86	44.181	0.7724					68	25	5	0	0	0	0.22232	1	15966	15966		70.929	32.753	1	59061000			39888	3417	29325	29559	38835	38835					-0.055898730925719065
QAEAADSWYL	10	Unmodified	_QAEAADSWYL_					0	0	0		ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-MSMS	A375_MHC_IP_R1	1	576.6649780273438	2	577.261653	1152.50875	0.35528	0.00020509	-0.6535	-0.00037724	-0.29822	-0.00017215	577.2612307870579	69.465	0.75926	69.465	69.224	69.983	0					36	14	4	0	0	0	0.70496	1	25287	25287		10.074	10.074	1	11790000			39889	4214	29326	29560	38836	38836					-0.061400455242846874
QAEFEKKWEN	10	Unmodified	_QAEFEKKWEN_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3	MSMS	A375_MHC_IP_R2	2	436.61749267578125	3	436.878815	1307.61462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.959	1	23.589	23.089	24.089	0.63014								0	0	0	0.15531	1	7328	7328		3.5871	0	1				39890	8493;12337	29327	29561	38837	38837					-0.026887096787959308
QAEGPNRLLY	10	Unmodified	_QAEGPNRLLY_					0	0	0		ENST00000563748.5_1_15:34651330-34651973:-|nuORF;ENSG00000176454|ENST00000314891|LPCAT4	ENST00000563748.5_1_15:34651330-34651973:-|nuORF	ENST00000563748.5_1_15:34651330-34651973:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	581.2066040039062	2	580.806562	1159.59857	0.27687	0.00016081	0.022172	1.2878E-05	0.29905	0.00017369	580.8066386342796	48.972	0.65756	48.972	48.577	49.235	0					19	12	2	0	0	0	0.024099	1	17300	17300		86.332	54.294	1	2427700			39891	8023	29328	29562	38838	38838					0.025156288749712985
QAEGPNRLLY	10	Unmodified	_QAEGPNRLLY_					0	0	0		ENST00000563748.5_1_15:34651330-34651973:-|nuORF;ENSG00000176454|ENST00000314891|LPCAT4	ENST00000563748.5_1_15:34651330-34651973:-|nuORF	ENST00000563748.5_1_15:34651330-34651973:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	581.2066650390625	2	580.806562	1159.59857	-0.21984	-0.00012769	0.32483	0.00018866	0.10499	6.0978E-05	580.8067633452066	48.096	0.50219	48.858	48.632	49.134	0.76128					16	9	2	0	0	0	0.032481	1	18071	18071		93.166	64.679	1	3776700			39892	8023	29328	29562	38839	38839					0.025156288749712985
QAELAQKYI	9	Unmodified	_QAELAQKYI_					0	0	0		tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1	tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1	tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	532.6742553710938	2	532.292756	1062.57096	-0.87586	-0.00046621	0.42875	0.00022822	-0.44711	-0.00023799	532.292952226437	66.861	0.40753	66.861	66.632	67.04	0					12	7	2	0	0	0	0.53748	1	24150	24150		18.146	0	1	1675200			39893	29602	29329	29563	38840	38840					0.04217725614716983
QAEQLVASV	9	Unmodified	_QAEQLVASV_					0	0	0			REV__ENSG00000077420|ENST00000376236|APBB1IP	REV__ENSG00000077420|ENST00000376236|APBB1IP	MSMS	A375_MHC_IP_R1	1	472.6766052246094	2	472.756007	943.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.451	1	50.451	49.951	50.951	0								0	0	0	0.13141	1	17874	17874		32.305	6.9062	1		+		39894	16694	29330	29564	38841	38841					0.023451771722307058
QAFCGMFFIY	10	Unmodified	_QAFCGMFFIY_					0	0	0			REV__OR8H1|p.S92F|3|0.25|ENSG00000181693|chr11:56290788-56290788|G/A|missense_variant	REV__OR8H1|p.S92F|3|0.25|ENSG00000181693|chr11:56290788-56290788|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	613.6900634765625	2	613.772288	1225.53002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.816	1	65.554	65.054	66.054	0.73811								0	0	0	0.15047	1	24574	24574		16.942	3.0362	1		+		39895	27701	29331	29565	38842	38842					-0.07372075020748525
QAFGLPRL	8	Unmodified	_QAFGLPRL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	A375_MHC_IP_R1	1	451.6661682128906	2	451.266345	900.518136	-0.22738	-0.00010261	0.023193	1.0466E-05	-0.20419	-9.2144E-05	451.2662912476212	83.558	1.0666	83.558	83.125	84.191	0					44	20	3	0	0	0	0.23604	1	30534	30534		64.236	13.381	1	6283600			39896	2672	29332	29566	38843	38843					0.06389812342570167
QAFGLPRL	8	Unmodified	_QAFGLPRL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	A375_MHC_IP_R2	2	451.6660461425781	2	451.266345	900.518136	-0.28609	-0.0001291	-0.21155	-9.5463E-05	-0.49763	-0.00022457	451.2662268979021	82.645	0.96136	83.388	82.839	83.8	0.74293					41	18	3	0	0	0	0.23604	1	31320	31320		64.236	13.381	1	6877100			39897	2672	29332	29566	38844	38844					0.06389812342570167
QAFKKRVA	8	Unmodified	_QAFKKRVA_					0	0	0			REV__tr|U7SIU1|U7SIU1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02231PE=4SV=1	REV__tr|U7SIU1|U7SIU1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02231PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	474.6926574707031	2	474.292894	946.571235	-0.36046	-0.00017096	0.24223	0.00011489	-0.11823	-5.6074E-05	474.29294398703246	143.92	0.24165	143.95	143.84	144.08	0.024414					7	4	2	0	0	0	0.77842	1	56241	56241		0.69038	0	1	1558700	+		39898	28217	29333	29567	38845	38845					0.09581190125220473
QAFPISHI	8	Unmodified	_QAFPISHI_					0	0	0		ENSG00000187513|ENST00000342280|GJA4;ENSG00000265107|ENST00000579774|GJA5	ENSG00000187513|ENST00000342280|GJA4;ENSG00000265107|ENST00000579774|GJA5	ENSG00000265107|ENST00000579774|GJA5	MULTI-SECPEP	A375_MHC_IP_R2	2	457.1503601074219	2	456.750527	911.486502	-0.21572	-9.8529E-05	-0.18505	-8.4521E-05	-0.40077	-0.00018305	456.7503231564781	63.201	0.45689	63.944	63.736	64.193	0.74263					15	8	2	0	0	0	0.64636	1	23984	23984		50.855	27.707	1	1139600			39899	8829;9955	29334	29568	38846	38846					0.027218195886121066
QAFPNTNRW	9	Unmodified	_QAFPNTNRW_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;ENST00000421044.1_1_3:40637993-40638476:-|nuORF;ENST00000434365.1_1_X:114937583-114938135:+|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	A375_MHC_IP_R1	1	567.6779174804688	2	567.277972	1132.54139	-0.16339	-9.269E-05	-0.14072	-7.9829E-05	-0.30412	-0.00017252	567.2778621518753	49.824	1.0202	49.824	49.387	50.408	0					42	19	3	0	0	0	0.084766	1	17776	17776		53.404	25.775	1	15856000			39900	9882	29335	29569	38847	38847					-0.01957793610790759
QAFPNTNRW	9	Unmodified	_QAFPNTNRW_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;ENST00000421044.1_1_3:40637993-40638476:-|nuORF;ENST00000434365.1_1_X:114937583-114938135:+|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	A375_MHC_IP_R2	2	567.6776123046875	2	567.277972	1132.54139	-0.56668	-0.00032146	-0.077951	-4.422E-05	-0.64463	-0.00036568	567.277933862295	49.166	0.96466	49.923	49.383	50.348	0.75737					56	18	4	0	0	0	0.41879	1	18603	18603		23.79	3.3752	1	15230000			39901	9882	29335	29569	38848	38848					-0.01957793610790759
QAFPNTNRW	9	Unmodified	_QAFPNTNRW_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;ENST00000421044.1_1_3:40637993-40638476:-|nuORF;ENST00000434365.1_1_X:114937583-114938135:+|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	567.277972	1132.54139	-0.56668	-0.00032146	-0.077951	-4.422E-05	-0.64463	-0.00036568	567.277933862295	49.166	0.96466	49.923	49.383	50.348	0.75737	0.049552	3.3667E-05	NaN	53.404	56	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15230000			39902	9882	29335	29569							-0.01957793610790759
QAFQMRRSL	9	Unmodified	_QAFQMRRSL_					0	0	0		nc|ENSG00000198815|Q9UPW0-2|FOXJ3;ENSG00000198815|ENST00000361346|FOXJ3	nc|ENSG00000198815|Q9UPW0-2|FOXJ3	nc|ENSG00000198815|Q9UPW0-2|FOXJ3	MSMS	A375_MHC_IP_R1	1	568.6996459960938	2	568.8033	1135.59205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.962	1	49.962	49.462	50.462	0								0	0	0	0.15283	1	17684	17684		16.942	3.8998	1				39903	9333	29336	29570	38849	38849					0.02967412442603745
QAGDRVLVY	9	Unmodified	_QAGDRVLVY_					0	0	0		ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	MULTI-MSMS	A375_MHC_IP_R1	1	511.1766662597656	2	510.777274	1019.53999	-0.46273	-0.00023635	-0.35362	-0.00018062	-0.81636	-0.00041698	510.77695035772746	59.27	0.55822	59.27	58.99	59.548	0					22	10	3	0	0	0	0.44024	1	21320	21320		22.736	0.98964	1	3787400			39904	6973	29337	29571	38850	38850					0.031005723004682295
QAGFIRTF	8	Unmodified	_QAGFIRTF_					0	0	0		ENSG00000102743|ENST00000338625|SLC25A15	ENSG00000102743|ENST00000338625|SLC25A15	ENSG00000102743|ENST00000338625|SLC25A15	MULTI-MSMS	A375_MHC_IP_R2	2	470.6556701660156	2	470.255977	938.497401	-0.58522	-0.0002752	-0.29844	-0.00014034	-0.88366	-0.00041555	470.2559105770984	62.84	0.50461	63.582	63.333	63.838	0.74263					21	9	3	0	0	0	0.31391	1	23806	23806		57.722	25.605	1	2959400			39905	2389	29338	29572	38851	38851					0.025692219629149804
QAGIQKVKY	9	Unmodified	_QAGIQKVKY_					0	0	0		ENSG00000152208|ENST00000282020|GRID2;nc|ENSG00000152208|O43424-2|GRID2;GRID2|p.G735E|1|0.26|ENSG00000152208|chr4:93626279-93626279|G/A|missense_variant	ENSG00000152208|ENST00000282020|GRID2	ENSG00000152208|ENST00000282020|GRID2	MULTI-SECPEP	A375_MHC_IP_R1	1	518.203857421875	2	517.803291	1033.59203	-0.28909	-0.00014969	1.2152	0.00062923	0.92611	0.00047954	517.8039090574074	42.999	0.50797	42.999	42.689	43.197	0					15	9	2	0	0	0	0.62767	1	14953	14953		16.942	12.186	1	1654100			39906	5950	29339	29573	38852	38852					0.07657735714224145
QAGVQIVR	8	Unmodified	_QAGVQIVR_					0	0	0			REV__ENST00000464083.5_1_6:36982408-36995936:+|nuORF	REV__ENST00000464083.5_1_6:36982408-36995936:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	435.6874694824219	2	435.761426	869.5083	-0.30176	-0.0001315	-0.2282	-9.9441E-05	-0.52996	-0.00023094	435.7613931033445	30.32	0.50731	31.039	30.759	31.266	0.71857					12	9	2	0	0	0	0.7256	1	10609	10609		26.884	2.8631	1	2637400	+		39907	19520	29340	29574	38853	38853					0.06832624337198467
QAINMIFLQEE	11	Unmodified	_QAINMIFLQEE_					0	0	0		tr|U7SYS2|U7SYS2_FUSNUPhosphatidylglycerollysyltransferaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00914PE=4SV=1	tr|U7SYS2|U7SYS2_FUSNUPhosphatidylglycerollysyltransferaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00914PE=4SV=1	tr|U7SYS2|U7SYS2_FUSNUPhosphatidylglycerollysyltransferaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00914PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	669.0187377929688	2	668.334295	1334.65404	-0.56029	-0.00037446	-3.5722	-0.0023875	-4.1325	-0.0027619	668.3325318111454	40.321	0.4085	40.321	40.1	40.509	0					14	7	3	0	0	0	0.99018	1	13848	13848		7.609	1.4032	1	3680800			39908	29844	29341	29575	38854	38854					9.674280431681836E-05
QAINPKLLQL	10	Unmodified	_QAINPKLLQL_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-SECPEP	A375_MHC_IP_R1	1	569.7529296875	2	569.353148	1136.69174	-0.51904	-0.00029552	-0.53363	-0.00030383	-1.0527	-0.00059934	569.3532533305963	84.541	0.30606	84.541	84.391	84.697	0					11	5	3	0	0	0	0.31583	1	30994	30994		62.573	33.491	1	1357300			39909	2826	29342	29576	38855	38855					0.1288655332818962
QAINPKLLQL	10	Unmodified	_QAINPKLLQL_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-SECPEP	A375_MHC_IP_R2	2	569.7517700195312	2	569.353148	1136.69174	-0.28281	-0.00016102	0.44266	0.00025203	0.15986	9.1015E-05	569.3526172243693	83.645	0.45958	84.385	84.099	84.559	0.73962					16	8	3	0	0	0	0.24526	1	31805	31805		78.728	53.329	1	1517500			39910	2826	29342	29576	38856	38856					0.1288655332818962
QAIQEATLL	9	Unmodified	_QAIQEATLL_					0	0	0			REV__ENSG00000151376|ENST00000524826|ME3	REV__ENSG00000151376|ENST00000524826|ME3	MULTI-SECPEP	A375_MHC_IP_R2	2	985.8720703125	1	986.551687	985.544411	0.10337	0.00010198	-0.38059	-0.00037547	-0.27721	-0.00027348	986.551241059898	90.435	0.60932	91.17	90.854	91.463	0.7345					25	11	3	0	0	0	0.79191	1	34302	34302		6.7232	0	1	6293000	+		39911	19750	29343	29577	38857	38857					0.05106036723384477
QAKNLGMPV	9	Unmodified	_QAKNLGMPV_					0	0	0		DISP1|p.V1395Cfs*18|1|0.06|ENSG00000154309|chr1:223005576-223005577|-/T|frameshift_variant;ENSG00000154309|ENST00000675850|DISP1	DISP1|p.V1395Cfs*18|1|0.06|ENSG00000154309|chr1:223005576-223005577|-/T|frameshift_variant	DISP1|p.V1395Cfs*18|1|0.06|ENSG00000154309|chr1:223005576-223005577|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	479.1792297363281	2	479.262945	956.511337	-0.74986	-0.00035938	0.90698	0.00043468	0.15712	7.5301E-05	479.26318386439584	62.106	0.40632	62.849	62.673	63.079	0.74263					12	7	2	0	0	0	0.73363	1	23538	23538		15.847	5.0233	1	1022200			39912	748	29344	29578	38858	38858					0.03134131399690432
QAKRLSDLLL	10	Unmodified	_QAKRLSDLLL_					0	0	0			REV__ENSG00000168282|ENST00000305386|MGAT2	REV__ENSG00000168282|ENST00000305386|MGAT2	MULTI-SECPEP	A375_MHC_IP_R2	2	385.9716796875	3	386.239796	1155.69756	-0.023552	-9.0967E-06	0.78624	0.00030368	0.76269	0.00029458	386.24012522664805	44.219	0.55745	44.988	44.631	45.188	0.7691					15	10	2	0	0	0	0.94651	1	16469	16469		3.5871	2.2574	1	2636600	+		39913	20840	29345	29579	38859	38859					0.1259365183987029
QAKTVRGP	8	Unmodified	_QAKTVRGP_					0	0	0			REV__ENST00000373779.7_2_1:29652185-29652539:+|nuORF	REV__ENST00000373779.7_2_1:29652185-29652539:+|nuORF	MSMS	A375_MHC_IP_R2	2	428.65081787109375	2	428.753601	855.49265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.69	1	143.72	143.22	144.22	0.024414								0	0	0	0.16876	1	56150	56150		2.5775	0	1		+		39914	24098	29346	29580	38860	38860					0.05912337820132052
QALASGSKAQF	11	Unmodified	_QALASGSKAQF_					0	0	0			REV__ENST00000497003.5_1_2:178552959-178791632:-|nuORF	REV__ENST00000497003.5_1_2:178552959-178791632:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	555.1930541992188	2	554.293288	1106.57202	-0.80471	-0.00044604	-0.92885	-0.00051486	-1.7336	-0.0009609	554.7933917959556	82.402	0.60965	83.145	82.787	83.397	0.74293					27	11	3	0	0	0	0.59391	1	31283	31283		23.79	4.3508	1	3819500	+		39915	18464	29347	29581	38861	38861					0.0229993998361806
QALKKGWLY	9	Unmodified	_QALKKGWLY_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;PLEC|p.T4363_D4371del|1|0.27|ENSG00000178209|chr8:143917118-143917144|TGTCGGCGAACTCGGTGATGGAGAGCG/-|inframe_deletion	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R1	1	553.6974487304688	2	553.821484	1105.62842	-0.24631	-0.00013641	-0.19594	-0.00010852	-0.44225	-0.00024493	553.8213538783766	45.409	0.50383	45.409	45.183	45.687	0					13	9	2	0	0	0	0.50702	1	15872	15872		32.305	23.712	1	2576300			39916	14788	29348	29582	38862	38862					0.07982612610953765
QALKKGWLY	9	Unmodified	_QALKKGWLY_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;PLEC|p.T4363_D4371del|1|0.27|ENSG00000178209|chr8:143917118-143917144|TGTCGGCGAACTCGGTGATGGAGAGCG/-|inframe_deletion	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R2	2	554.221435546875	2	553.821484	1105.62842	-0.78714	-0.00043593	0.72869	0.00040356	-0.058451	-3.2371E-05	553.8216852327631	44.433	0.40536	45.202	44.985	45.39	0.7691					13	7	2	0	0	0	0.50702	1	16600	16600		32.305	20.665	1	1748600			39917	14788	29348	29582	38863	38863					0.07982612610953765
QALLDILDYY	10	Unmodified	_QALLDILDYY_					0	0	0		nc|ENSG00000132535|P78352-2|DLG4	nc|ENSG00000132535|P78352-2|DLG4	nc|ENSG00000132535|P78352-2|DLG4	MSMS	A375_MHC_IP_R1	1	613.7192993164062	2	613.818804	1225.62306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.338	1	24.338	23.838	24.838	0								0	0	0	0.15365	1	6887	6887		10.074	3.8681	1				39918	14605	29349	29583	38864	38864					0.01926844237846126
QALPWVRYI	9	Unmodified	_QALPWVRYI_					0	0	0		ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1;ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2;ENST00000592703.1_1_19:16344886-16345243:+|nuORF	ENSG00000072958|ENST00000291439|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	MULTI-MSMS	A375_MHC_IP_R1	1	572.7236938476562	2	573.326934	1144.63931	-0.053052	-3.0416E-05	-0.56499	-0.00032392	-0.61804	-0.00035434	573.3265908241788	110.03	0.50829	110.03	109.78	110.29	0					19	9	3	0	0	0	0.11715	1	40364	40364		36.127	21.289	1	4038500			39919	1554	29350	29584	38865	38865					0.07278014985240588
QALRDNSTMGY	11	Oxidation (M)	_QALRDNSTM(Oxidation (M))GY_		QALRDNSTM(1)GY		QALRDNSTM(170)GY	0	0	1		ENSG00000096384|ENST00000371646|HSP90AB1;HSP90AB1|p.I628Sfs*56|1|0.12|ENSG00000096384|chr6:44253195-44253195|A/-|frameshift_variant;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1	ENSG00000096384|ENST00000371646|HSP90AB1;ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	A375_MHC_IP_R1	1	636.687255859375	2	636.287876	1270.5612	-0.7109	-0.00045234	-0.21046	-0.00013391	-0.92135	-0.00058625	636.287837215986	24.723	1.0656	24.723	24.547	25.613	0					34	20	2	0	0	0	1.8163E-12	2	7090	7090;7368		169.92	129.97	1	9863500			39920	2057;1722	29351	29585	38866;38867	38866		56			-0.06325830452988157
QALRDNSTMGY	11	Oxidation (M)	_QALRDNSTM(Oxidation (M))GY_		QALRDNSTM(1)GY		QALRDNSTM(160)GY	0	0	1		ENSG00000096384|ENST00000371646|HSP90AB1;HSP90AB1|p.I628Sfs*56|1|0.12|ENSG00000096384|chr6:44253195-44253195|A/-|frameshift_variant;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1	ENSG00000096384|ENST00000371646|HSP90AB1;ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	A375_MHC_IP_R2	2	636.6870727539062	2	636.287876	1270.5612	-1.0876	-0.00069205	-0.15786	-0.00010044	-1.2455	-0.00079249	636.2879399876037	24.165	1.0152	24.809	24.653	25.668	0.64368					31	19	3	0	0	0	4.5543E-08	1	7918	7918		158.08	118.13	1	5790400			39921	2057;1722	29351	29585	38868	38868		56			-0.06325830452988157
QALRDNSTMGY	11	Unmodified	_QALRDNSTMGY_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;HSP90AB1|p.I628Sfs*56|1|0.12|ENSG00000096384|chr6:44253195-44253195|A/-|frameshift_variant;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1	ENSG00000096384|ENST00000371646|HSP90AB1;ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	A375_MHC_IP_R1	1	628.6907958984375	2	628.290419	1254.56629	-0.53975	-0.00033912	0.32382	0.00020345	-0.21594	-0.00013567	628.2905481696519	33.673	0.35325	33.673	33.445	33.798	0					12	6	2	0	0	0	0.049456	1	11039	11039		79.427	39.477	1	2788500			39922	2057;1722	29351	29586	38869	38869					-0.05081526590379326
QALRDNSTMGY	11	Unmodified	_QALRDNSTMGY_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;HSP90AB1|p.I628Sfs*56|1|0.12|ENSG00000096384|chr6:44253195-44253195|A/-|frameshift_variant;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1	ENSG00000096384|ENST00000371646|HSP90AB1;ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	A375_MHC_IP_R2	2	628.6902465820312	2	628.290419	1254.56629	-0.91016	-0.00057184	0.49506	0.00031104	-0.41509	-0.0002608	628.2905715626874	32.925	0.45836	33.662	33.468	33.926	0.73691					13	8	2	0	0	0	7.6884E-06	1	11776	11776		150.62	108.78	1	5279200			39923	2057;1722	29351	29586	38870	38870					-0.05081526590379326
QANALSAQFI	10	Unmodified	_QANALSAQFI_					0	0	0			REV__nc|ENSG00000104133|Q96JI7-2|SPG11	REV__nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-SECPEP	A375_MHC_IP_R1	1	532.1819458007812	2	531.782556	1061.55056	-0.65508	-0.00034836	0.086852	4.6186E-05	-0.56822	-0.00030217	531.7825175688986	77.217	0.65806	77.217	76.878	77.537	0					28	12	3	0	0	0	0.71464	1	28138	28138		33.445	2.1766	1	4506100	+		39924	17305	29352	29587	38871	38871					0.022245549549097632
QAPAPPVEAV	10	Unmodified	_QAPAPPVEAV_					0	0	0			REV__ENST00000536178.3_1_7:101944355-101950044:+|nuORF	REV__ENST00000536178.3_1_7:101944355-101950044:+|nuORF	MSMS	A375_MHC_IP_R1	1	489.6924133300781	2	489.766374	977.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.594	1	43.594	43.094	44.094	0								0	0	0	0.15207	1	15164	15164		13.906	0.39817	1		+		39925	25912	29353	29588	38872	38872					0.02853767551891906
QAPEGLKVKL	10	Unmodified	_QAPEGLKVKL_					0	0	0		ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	MULTI-MSMS	A375_MHC_IP_R1	1	361.9454040527344	3	361.557125	1081.64954	0.050321	1.8194E-05	-0.21099	-7.6286E-05	-0.16067	-5.8092E-05	361.557016946393	19.6	0.30521	19.6	19.42	19.725	0					9	5	2	0	0	0	0.68889	2	4907	4907;4950		14.218	6.7411	1	4899200			39926	8292	29354	29589	38873;38874	38873					0.1119857791979939
QAPPKAPGLPQ	11	Unmodified	_QAPPKAPGLPQ_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-SECPEP	A375_MHC_IP_R1	1	367.93194580078125	3	368.545108	1102.61349	0.44758	0.00016495	-0.85244	-0.00031416	-0.40486	-0.00014921	368.54481022887455	43.578	2.034	43.578	43.3	45.334	0					47	39	2	0	0	0	0.99791	1	15196	15196		2.2527	0	1	2335600	+		39927	21972	29355	29590	38875	38875					0.06629120742945815
QAPPPPQQV	9	Unmodified	_QAPPPPQQV_					0	0	0		nc|ENSG00000198815|Q9UPW0-2|FOXJ3;ENSG00000198815|ENST00000361346|FOXJ3	nc|ENSG00000198815|Q9UPW0-2|FOXJ3	nc|ENSG00000198815|Q9UPW0-2|FOXJ3	MULTI-MSMS	A375_MHC_IP_R2	2	481.6585693359375	2	481.258717	960.50288	-1.2442	-0.00059878	-1.2928	-0.00062219	-2.537	-0.001221	481.25872555838635	29.327	0.95846	30.025	29.78	30.739	0.69872					28	18	3	0	0	0	0.0098409	1	10347	10347		115.69	44.558	1	2966500			39928	9333	29356	29591	38876	38876					0.02104900754704886
QAPSEVPQL	9	Unmodified	_QAPSEVPQL_					0	0	0		ENSG00000142235|ENST00000600059|LMTK3	ENSG00000142235|ENST00000600059|LMTK3	ENSG00000142235|ENST00000600059|LMTK3	MULTI-MSMS	A375_MHC_IP_R2	2	486.7023010253906	2	484.756007	967.497461	-0.45216	-0.00021919	0.17547	8.5061E-05	-0.27669	-0.00013413	484.756035729249	43.382	2.0256	44.155	43.623	45.649	0.7724					90	39	5	0	0	0	0.51106	1	16229	16229		19.257	4.6753	1	274420000			39929	5300	29357	29592	38877	38877					0.01241177172244079
QAQKLLFKQ	9	Unmodified	_QAQKLLFKQ_					0	0	0			REV__tr|U7T2B6|U7T2B6_FUSNULonproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lonPE=2SV=1	REV__tr|U7T2B6|U7T2B6_FUSNULonproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lonPE=2SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	369.2611083984375	3	368.557236	1102.64988	0.35895	0.00013229	0.24029	8.8561E-05	0.59924	0.00022086	368.5572349912874	23.144	0.4538	23.144	22.773	23.227	0					15	8	2	0	0	0	0.77948	1	6208	6208		10.151	6.8309	1	1554800	+		39930	28734	29358	29593	38878	38878					0.10265997639658053
QAQPTKPAL	9	Unmodified	_QAQPTKPAL_					0	0	0		nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1;STAU1|p.P357Q|1|0.08|ENSG00000124214|chr20:49120025-49120025|G/T|missense_variant	nc|ENSG00000124214|O95793-2|STAU1	nc|ENSG00000124214|O95793-2|STAU1	MULTI-SECPEP	A375_MHC_IP_R1	1	477.67364501953125	2	477.274367	952.53418	-0.67138	-0.00032043	0.16042	7.6563E-05	-0.51096	-0.00024387	477.2745087926407	25.712	0.65961	25.712	25.562	26.221	0					14	12	2	0	0	0	0.13208	1	7583	7583		66.457	22.684	1	2368200			39931	3885	29359	29594	38879	38879					0.056014737887949195
QAQVDSYDQY	10	Unmodified	_QAQVDSYDQY_					0	0	0			REV__nc|ENSG00000151725|Q71F23-2|CENPU	REV__nc|ENSG00000151725|Q71F23-2|CENPU	MULTI-SECPEP	A375_MHC_IP_R2	2	608.6890869140625	2	608.759475	1215.5044	-0.80541	-0.0004903	-0.57968	-0.00035288	-1.3851	-0.00084318	608.7593328318401	58.877	0.45639	59.624	59.286	59.742	0.74714					14	8	2	0	0	0	0.88918	1	22318	22318		13.042	0.51092	1	904220	+		39932	19769	29360	29595	38880	38880					-0.0947355473783773
QARAVGLAGT	10	Unmodified	_QARAVGLAGT_					0	0	0		ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1;ENST00000473212.1_1_21:46927018-46932309:+|nuORF	ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	MULTI-MSMS	A375_MHC_IP_R2	2	472.6690368652344	2	472.269616	942.524678	-0.79944	-0.00037755	0.1087	5.1338E-05	-0.69074	-0.00032621	472.26967438392376	35.14	1.1117	35.903	35.171	36.283	0.76338					31	21	2	0	0	0	0.57505	1	12507	12507		22.736	2.2827	1	12325000			39933	8443	29361	29596	38881	38881					0.051117055032818826
QARIEIESF	9	Unmodified	_QARIEIESF_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-SECPEP	A375_MHC_IP_R1	1	546.2468872070312	2	546.787838	1091.56112	-0.60995	-0.00033351	0.64145	0.00035074	0.031499	1.7223E-05	546.788309433488	65.025	0.96678	65.025	64.393	65.36	0					43	18	3	0	0	0	0.053904	1	23484	23484		74.929	28.908	1	6604300			39934	1188	29362	29597	38882	38882					0.019005376093446102
QARPVSVL	8	Unmodified	_QARPVSVL_					0	0	0			REV__ENSG00000267206|ENST00000341206|LCN6	REV__ENSG00000267206|ENST00000341206|LCN6	MULTI-MSMS	A375_MHC_IP_R2	2	435.66357421875	2	435.263802	868.513051	-0.28471	-0.00012392	-0.19561	-8.5141E-05	-0.48032	-0.00020906	435.2636957153862	62.72	0.60748	63.463	63.18	63.788	0.74263					25	11	3	0	0	0	0.72008	1	23756	23756		28.487	5.3384	1	5072800	+		39935	22930	29363	29598	38883	38883					0.07353508479945958
QASNGVLIR	9	Unmodified	_QASNGVLIR_					0	0	0		ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	MULTI-MSMS	A375_MHC_IP_R2	2	479.6769714355469	2	479.277441	956.540328	-0.36367	-0.0001743	-0.0040912	-1.9608E-06	-0.36776	-0.00017626	479.2773251011022	115.33	5.995	116.02	113.03	119.03	0.68999					294	117	3	0	0	0	0.73415	1	43101	43101		3.9444	0.3479	1	60713000			39936	7115	29364	29599	38884	38884					0.060319920203255606
QASRAPRV	8	Unmodified	_QASRAPRV_					0	0	0		ENSG00000204624|ENST00000294484|DISP3;nc|ENSG00000204624|Q9P2K9-2|DISP3	ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	MSMS	A375_MHC_IP_R2	2	442.6531982421875	2	442.756675	883.498798	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.45	1	32.168	31.668	32.668	0.71857								0	0	0	0.16876	1	11119	11119		34.102	5.6156	1				39937	9469	29365	29600	38885	38885					0.05238856051653329
QASRTPLTTL	10	Unmodified	_QASRTPLTTL_					0	0	0		ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	MULTI-SECPEP	A375_MHC_IP_R1	1	543.6426391601562	2	544.308938	1086.60332	-0.56662	-0.00030842	-2.6934	-0.001466	-3.26	-0.0017744	544.3079060824858	73.95	0.40599	73.95	73.74	74.146	0					13	7	3	0	0	0	0.8528	1	26894	26894		11.495	0.67078	1	971130			39938	3333	29366	29601	38886	38886					0.06348513017701407
QATDKWAGEPV	11	Unmodified	_QATDKWAGEPV_					0	0	0			REV__nc|ENSG00000159363|Q9NQ11-3|ATP13A2	REV__nc|ENSG00000159363|Q9NQ11-3|ATP13A2	MULTI-MSMS	A375_MHC_IP_R2	2	602.2530517578125	2	601.296027	1200.5775	-0.44062	-0.00026494	-0.92044	-0.00055346	-1.3611	-0.0008184	601.2960006034832	63.607	2.5383	64.347	63.077	65.615	0.74022					134	49	3	0	0	0	0.57844	1	24286	24286		24.991	1.2012	1	10565000	+		39939	20116	29367	29602	38887	38887					-0.014763812245973895
QATKCKLAGL	10	Unmodified	_QATKCKLAGL_					0	0	0		nc|ENSG00000196116|Q8NHU6-2|TDRD7;ENSG00000196116|ENST00000355295|TDRD7	nc|ENSG00000196116|Q8NHU6-2|TDRD7	nc|ENSG00000196116|Q8NHU6-2|TDRD7	MULTI-MSMS	A375_MHC_IP_R1	1	517.69921875	2	516.797152	1031.57975	-0.73572	-0.00038022	0.11195	5.7855E-05	-0.62377	-0.00032236	517.2991207914087	84.965	0.51166	84.965	84.647	85.159	0					20	9	3	0	0	0	0.63639	1	31154	31154		18.146	3.3081	1	1901500			39940	8997	29368	29603	38888	38888					0.06522375979557182
QATPEQYQ	8	Unmodified	_QATPEQYQ_					0	0	0		ENST00000453932.1_1_7:76099481-76100288:-|nuORF	ENST00000453932.1_1_7:76099481-76100288:-|nuORF	ENST00000453932.1_1_7:76099481-76100288:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	482.68377685546875	2	482.722164	963.429775	-0.5383	-0.00025985	-0.30176	-0.00014566	-0.84006	-0.00040552	482.72195061917364	67.684	0.91755	68.42	67.951	68.868	0.73631					40	17	3	0	0	0	0.76654	1	25576	25576		15.847	1.9411	1	7939300			39941	12106	29369	29604	38889	38889					-0.05340272758564879
QATPLLHAL	9	Unmodified	_QATPLLHAL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.S3306Afs*6|1|0.29|ENSG00000086758|chrX:53549078-53549079|-/ACGC|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	A375_MHC_IP_R1	1	482.6845703125	2	482.284734	962.554916	-0.3771	-0.00018187	0.4086	0.00019706	0.031502	1.5193E-05	482.28483690873213	68.662	0.70856	68.662	68.361	69.07	0					33	13	4	0	0	0	0.054184	1	24873	24873		50.855	22.368	1	6213000			39942	1846	29370	29605	38890	38890					0.07214064168454115
QATPLLHAL	9	Unmodified	_QATPLLHAL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.S3306Afs*6|1|0.29|ENSG00000086758|chrX:53549078-53549079|-/ACGC|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	A375_MHC_IP_R2	2	482.68377685546875	2	482.284734	962.554916	-0.5458	-0.00026323	-0.036649	-1.7675E-05	-0.58245	-0.00028091	482.2846512941384	67.58	0.81511	68.317	67.951	68.766	0.73631					30	15	3	0	0	0	0.40041	1	25576	25576		30.225	13.283	1	7254300			39943	1846	29370	29605	38891	38891					0.07214064168454115
QATPRVRIL	9	Unmodified	_QATPRVRIL_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	A375_MHC_IP_R1	1	351.93414306640625	3	351.889097	1052.64546	-0.16369	-5.7599E-05	0.20025	7.0465E-05	0.036562	1.2866E-05	351.8891189823913	39.453	0.86261	39.453	39.187	40.05	0					35	16	4	0	0	0	0.33243	3	13507	13412;13464;13507		28.234	15.361	1	14730000			39944	5371	29371	29606	38892;38893;38894	38894					0.1212453321677458
QATPRVRIL	9	Unmodified	_QATPRVRIL_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	A375_MHC_IP_R2	2	351.93408203125	3	351.889097	1052.64546	-0.61998	-0.00021816	-0.093705	-3.2974E-05	-0.71368	-0.00025114	351.88904352624445	38.454	0.45605	39.229	38.997	39.453	0.77451					26	8	4	0	0	0	0.25114	2	14190	14083;14190		34.222	18.973	1	15555000			39945	5371	29371	29606	38895;38896	38896					0.1212453321677458
QATTNARIL	9	Unmodified	_QATTNARIL_					0	0	0		ENSG00000145040|ENST00000273610|UCN2	ENSG00000145040|ENST00000273610|UCN2	ENSG00000145040|ENST00000273610|UCN2	MULTI-SECPEP	A375_MHC_IP_R1	1	493.6402587890625	2	494.282723	986.550893	-0.42106	-0.00020812	-0.1657	-8.1905E-05	-0.58676	-0.00029003	494.28262774204154	32	0.9653	32	31.769	32.734	0					49	18	4	0	0	0	0.010788	1	10288	10288		142.08	49.588	1	63920000			39946	5535	29372	29607	38897	38897					0.057079746747604077
QATTNARIL	9	Unmodified	_QATTNARIL_					0	0	0		ENSG00000145040|ENST00000273610|UCN2	ENSG00000145040|ENST00000273610|UCN2	ENSG00000145040|ENST00000273610|UCN2	MULTI-SECPEP	A375_MHC_IP_R2	2	494.6824645996094	2	494.282723	986.550893	-0.51936	-0.00025671	-0.25325	-0.00012518	-0.77261	-0.00038189	494.2825989697204	31.232	1.0169	31.95	31.669	32.686	0.71857					51	19	4	0	0	0	0.025235	1	10995	10995		107.19	31.426	1	45120000			39947	5535	29372	29607	38898	38898					0.057079746747604077
QATTVLHIL	9	Unmodified	_QATTVLHIL_					0	0	0		DDX3X|p.A68Rfs*153|1|0.89|ENSG00000215301|chrX:41341534-41341534|G/-|frameshift_variant	DDX3X|p.A68Rfs*153|1|0.89|ENSG00000215301|chrX:41341534-41341534|G/-|frameshift_variant	DDX3X|p.A68Rfs*153|1|0.89|ENSG00000215301|chrX:41341534-41341534|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	498.6971130371094	2	498.297842	994.581131	-0.1916	-9.5472E-05	0.0016942	8.4423E-07	-0.1899	-9.4628E-05	498.2977610284156	78.813	1.0679	78.813	78.454	79.522	0					34	20	3	0	0	0	0.040439	1	28703	28703		81.613	39.519	1	12105000			39948	726	29373	29608	38899	38899					0.0836233333996006
QATTVLHIL	9	Unmodified	_QATTVLHIL_					0	0	0		DDX3X|p.A68Rfs*153|1|0.89|ENSG00000215301|chrX:41341534-41341534|G/-|frameshift_variant	DDX3X|p.A68Rfs*153|1|0.89|ENSG00000215301|chrX:41341534-41341534|G/-|frameshift_variant	DDX3X|p.A68Rfs*153|1|0.89|ENSG00000215301|chrX:41341534-41341534|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	498.6470031738281	2	498.297842	994.581131	-0.52968	-0.00026394	0.0005514	2.7476E-07	-0.52912	-0.00026366	498.2977221736024	77.742	0.81492	78.485	78.165	78.98	0.74293					39	15	4	0	0	0	0.023756	1	29537	29537		92.822	44.476	1	9784800			39949	726	29373	29608	38900	38900					0.0836233333996006
QATVAEGESP	10	Unmodified	_QATVAEGESP_					0	0	0		ENSG00000176774|ENST00000325250|MAGEB18	ENSG00000176774|ENST00000325250|MAGEB18	ENSG00000176774|ENST00000325250|MAGEB18	MSMS	A375_MHC_IP_R1	1	494.68267822265625	2	494.732729	987.450904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.927	1	31.927	31.427	32.427	0								0	0	0	0.14601	1	10268	10268		25.399	1.3787	1				39950	8034	29374	29609	38901	38901					-0.04332307449703876
QAVHYPQRSA	10	Unmodified	_QAVHYPQRSA_					0	0	0		ENST00000491746.5_1_15:42126941-42127148:+|nuORF	ENST00000491746.5_1_15:42126941-42127148:+|nuORF	ENST00000491746.5_1_15:42126941-42127148:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	579.263671875	2	578.796529	1155.5785	-0.3836	-0.00022202	4.0257	0.0023301	3.6421	0.002108	579.3015335617011	66.453	0.20297	66.453	66.275	66.478	0					5	3	2	0	0	0	0.70651	1	24016	24016		9.3831	0.63772	1	762400			39951	12665	29375	29610	38902	38902					0.006938779349866309
QAVLASEP	8	Unmodified	_QAVLASEP_					0	0	0		ENST00000371602.8_1_20:49507708-49507915:-|nuORF	ENST00000371602.8_1_20:49507708-49507915:-|nuORF	ENST00000371602.8_1_20:49507708-49507915:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	408.1191711425781	2	407.718893	813.423233	-0.21304	-8.6859E-05	0.44842	0.00018283	0.23539	9.5972E-05	407.718938198256	99.536	0.60684	99.536	99.268	99.875	0					16	11	2	0	0	0	0.84748	1	36598	36598		28.487	8.0332	1	2021800			39952	11179	29376	29611	38903	38903					0.009058340807200693
QAVWLQVR	8	Unmodified	_QAVWLQVR_					0	0	0		ENST00000538236.1_1_12:123345767-123346160:+|nuORF	ENST00000538236.1_1_12:123345767-123346160:+|nuORF	ENST00000538236.1_1_12:123345767-123346160:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	499.6747741699219	2	500.290351	998.566149	-0.30545	-0.00015281	-0.68562	-0.00034301	-0.99106	-0.00049582	500.28986144285057	33.7	0.30039	33.7	33.547	33.848	0					7	5	2	0	0	0	0.95423	1	11024	11024		18.135	3.2967	1	901050			39953	13256	29377	29612	38904	38904					0.06680886262597596
QAYKGLLQY	9	Unmodified	_QAYKGLLQY_					0	0	0		ENSG00000143498|ENST00000352967|TAF1A;nc|ENSG00000143498|Q15573-2|TAF1A;TAF1A|p.D254Vfs*30|1|0.51|ENSG00000143498|chr1:222569643-222569643|T/-|frameshift_variant	ENSG00000143498|ENST00000352967|TAF1A	ENSG00000143498|ENST00000352967|TAF1A	MULTI-SECPEP	A375_MHC_IP_R1	1	542.6583862304688	2	542.295299	1082.57605	-0.61101	-0.00033135	0.14486	7.8557E-05	-0.46615	-0.00025279	542.2951930579725	60.522	0.61061	60.522	60.21	60.821	0					26	11	3	0	0	0	0.14422	1	21800	21800		43.858	15.371	1	4060300			39954	5401	29378	29613	38905	38905					0.038060294773458736
QAYKGLLQY	9	Unmodified	_QAYKGLLQY_					0	0	0		ENSG00000143498|ENST00000352967|TAF1A;nc|ENSG00000143498|Q15573-2|TAF1A;TAF1A|p.D254Vfs*30|1|0.51|ENSG00000143498|chr1:222569643-222569643|T/-|frameshift_variant	ENSG00000143498|ENST00000352967|TAF1A	ENSG00000143498|ENST00000352967|TAF1A	MULTI-SECPEP	A375_MHC_IP_R2	2	542.6946411132812	2	542.295299	1082.57605	-1.1996	-0.00065054	0.56165	0.00030458	-0.63795	-0.00034596	542.2954686587136	59.749	0.60552	60.496	60.148	60.753	0.74714					23	11	3	0	0	0	0.037185	1	22605	22605		85.272	17.928	1	4638300			39955	5401	29378	29613	38906	38906					0.038060294773458736
QAYPEVRIV	9	Unmodified	_QAYPEVRIV_					0	0	0		ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	A375_MHC_IP_R1	1	538.2007446289062	2	537.800749	1073.58694	-0.60993	-0.00032802	-1.7121	-0.00092077	-2.322	-0.0012488	537.8001417186523	63.212	1.0234	63.212	62.505	63.529	0					41	19	3	0	0	0	0.061442	1	22819	22819		63.961	33.736	1	7443600			39956	4716	29379	29614	38907	38907					0.0530943185160595
QAYPEVRIV	9	Unmodified	_QAYPEVRIV_					0	0	0		ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	A375_MHC_IP_R2	2	538.1998901367188	2	537.800749	1073.58694	-0.99475	-0.00053498	-1.866	-0.0010035	-2.8607	-0.0015385	537.8001942734631	62.374	0.96266	63.117	62.571	63.534	0.74263					48	18	4	0	0	0	0.10362	1	23643	23643		63.961	24.011	1	6329000			39957	4716	29379	29614	38908	38908					0.0530943185160595
QAYSHLNKL	9	Unmodified	_QAYSHLNKL_					0	0	0			REV__ENST00000447136.1_2_7:2376752-2393878:-|nuORF	REV__ENST00000447136.1_2_7:2376752-2393878:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	357.9449768066406	3	358.529458	1072.56654	-0.25083	-8.9931E-05	0.58482	0.00020967	0.33398	0.00011974	358.5294105800703	38.345	0.30801	38.345	38.218	38.526	0					6	5	2	0	0	0	0.65527	1	13032	13032		16.566	10.374	1	1093000	+		39958	24864	29380	29615	38909	38909					0.033162611917987306
QCDPGYDIV	9	Unmodified	_QCDPGYDIV_					0	0	0		SEZ6L|p.G781E|1|0.27|ENSG00000100095|chr22:26347848-26347848|G/A|missense_variant;ENST00000483291.1_1_22:26743758-26747244:+|nuORF;nc|ENSG00000100095|Q9BYH1-2|SEZ6L;nc|ENSG00000100095|Q9BYH1-3|SEZ6L;nc|ENSG00000100095|Q9BYH1-5|SEZ6L;nc|ENSG00000100095|Q9BYH1-4|SEZ6L;nc|ENSG00000100095|Q9BYH1-7|SEZ6L;nc|ENSG00000100095|Q9BYH1-6|SEZ6L;ENSG00000100095|ENST00000248933|SEZ6L	SEZ6L|p.G781E|1|0.27|ENSG00000100095|chr22:26347848-26347848|G/A|missense_variant	SEZ6L|p.G781E|1|0.27|ENSG00000100095|chr22:26347848-26347848|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	505.1899108886719	2	505.2184	1008.42225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.488	1	73.488	72.988	73.988	0								0	0	0	0.15486	1	26758	26758		12.532	0	1				39959	2115	29381	29616	38910	38910					-0.0816274835050308
QCGIFRRE	8	Unmodified	_QCGIFRRE_					0	0	0		ENST00000531270.5_1_15:101565016-101589971:+|nuORF	ENST00000531270.5_1_15:101565016-101589971:+|nuORF	ENST00000531270.5_1_15:101565016-101589971:+|nuORF	MSMS	A375_MHC_IP_R2	2	504.6972961425781	2	504.755818	1007.49708	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.907	1	78.65	78.15	79.15	0.74293								0	0	0	0.16876	1	29585	29585		18.135	0	1				39960	13165	29382	29617	38911	38911					-0.00636521028604875
QCKDGPIKRY	10	Unmodified	_QCKDGPIKRY_					0	0	0			REV__ENSG00000134243|ENST00000256637|SORT1	REV__ENSG00000134243|ENST00000256637|SORT1	MULTI-MSMS	A375_MHC_IP_R1	1	403.2549133300781	3	403.213252	1206.61793	-0.57453	-0.00023166	3.2463	0.0013089	2.6717	0.0010773	403.2141331503034	19.327	0.50369	19.327	19.221	19.725	0					16	11	2	0	0	0	0.70329	1	4776	4776		6.1918	0	1	17221000	+		39961	18760	29383	29618	38912	38912					0.022882618942276167
QCLGPGKF	8	Unmodified	_QCLGPGKF_					0	0	0		nc|ENSG00000147852|P98155-2|VLDLR;ENSG00000147852|ENST00000382100|VLDLR	nc|ENSG00000147852|P98155-2|VLDLR	nc|ENSG00000147852|P98155-2|VLDLR	MSMS	A375_MHC_IP_R1	1	425.1659240722656	2	425.218006	848.421459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.49	1	95.49	94.99	95.99	0								0	0	0	0.16876	1	35099	35099		11.64	0.52583	1				39962	5708	29384	29619	38913	38913					-0.008814982088892975
QCLRSLGGY	9	Unmodified	_QCLRSLGGY_					0	0	0		ENST00000483781.5_1_2:98330105-98349944:+|nuORF;ENSG00000115085|ENST00000264972|ZAP70	ENST00000483781.5_1_2:98330105-98349944:+|nuORF	ENST00000483781.5_1_2:98330105-98349944:+|nuORF	MSMS	A375_MHC_IP_R1	1	498.66357421875	2	498.750201	995.48585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.856	1	80.856	80.356	81.356	0								0	0	0	0.1499	1	29542	29542		21.747	1.293	1				39963	3268	29385	29620	38914	38914					-0.012073431227349829
QCMCADCDANV	11	Unmodified	_QCMCADCDANV_					0	0	0			REV__ENSG00000138615|ENST00000261883|CILP	REV__ENSG00000138615|ENST00000261883|CILP	MSMS	A375_MHC_IP_R2	2	586.6961059570312	2	586.695594	1171.37664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.023	1	98.783	98.283	99.283	0.75977								0	0	0	0.16297	1	37195	37195		3.2813	1.6287	1		+		39964	19101	29386	29621	38915	38915					-0.20219801191069564
QCNEGAYF	8	Unmodified	_QCNEGAYF_					0	0	0		ENSG00000179144|ENST00000313543|GIMAP7	ENSG00000179144|ENST00000313543|GIMAP7	ENSG00000179144|ENST00000313543|GIMAP7	MSMS	A375_MHC_IP_R2	2	466.1296691894531	2	466.18436	930.354167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.994	1	51.748	51.248	52.248	0.75406								0	0	0	0.16876	1	19182	19182		19.439	1.2926	1				39965	8208	29387	29622	38916	38916					-0.11379573210501803
QCVSSGQTFY	10	Unmodified	_QCVSSGQTFY_					0	0	0			REV__ENST00000366591.4_1_1:236305922-236343463:+|nuORF	REV__ENST00000366591.4_1_1:236305922-236343463:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	560.1809692382812	2	560.242406	1118.47026	-0.49709	-0.00027849	-3.0959	-0.0017345	-3.593	-0.002013	560.2399249988076	86.239	0.81627	86.972	86.693	87.509	0.733					20	15	2	0	0	0	0.91909	1	32938	32938		9.3831	2.0939	1	840680	+		39966	23934	29388	29623	38917	38917					-0.08423674430446226
QDADKALTL	9	Unmodified	_QDADKALTL_					0	0	0		ENSG00000126001|ENST00000397527|CEP250;nc|ENSG00000126001|Q9BV73-2|CEP250	ENSG00000126001|ENST00000397527|CEP250	ENSG00000126001|ENST00000397527|CEP250	MSMS	A375_MHC_IP_R2	2	487.70025634765625	2	487.761289	973.508025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.396	1	72.13	71.63	72.63	0.73421								0	0	0	0.12568	1	27085	27085		34.102	7.2188	1				39967	4019	29389	29624	38918	38918					0.02021159826665553
QDANEQGQDL	10	Unmodified	_QDANEQGQDL_					0	0	0		nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1;ENST00000528882.5_1_11:57067274-57087552:-|nuORF;ENSG00000149115|ENST00000358252|TNKS1BP1	nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1	nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1	MSMS	A375_MHC_IP_R2	2	559.2413940429688	2	559.241449	1116.46835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.53	1	128.77	128.27	129.27	0.23946								0	0	0	0.15332	1	50478	50478		10.074	2.7847	1				39968	5783	29390	29625	38919	38919					-0.08523011914712697
QDASYVPRY	9	Unmodified	_QDASYVPRY_					0	0	0			REV__ENSG00000135702|ENST00000336257|CHST5	REV__ENSG00000135702|ENST00000336257|CHST5	MULTI-SECPEP	A375_MHC_IP_R1	1	550.1638793945312	2	549.764363	1097.51417	-0.48273	-0.00026539	-0.0037279	-2.0495E-06	-0.48646	-0.00026744	549.7642294976755	33.773	0.55653	33.773	33.445	34.001	0					17	10	2	0	0	0	0.71341	1	11060	11060		13.042	0	1	5168100	+		39969	18877	29391	29626	38920	38920					-0.030683219418278895
QDATELNNQLY	11	Unmodified	_QDATELNNQLY_					0	0	0			REV__ENSG00000113971|ENST00000337331|NPHP3	REV__ENSG00000113971|ENST00000337331|NPHP3	MULTI-MSMS	A375_MHC_IP_R1	1	655.20703125	2	654.806956	1307.59936	-0.38358	-0.00025117	0.23098	0.00015125	-0.1526	-9.9926E-05	654.8071387059321	52.262	0.35426	52.262	51.982	52.336	0					10	6	2	0	0	0	0.59391	1	18594	18594		23.79	1.0535	1	2396200	+		39970	17810	29392	29627	38921	38921					-0.0421362126664917
QDATELNNQLY	11	Unmodified	_QDATELNNQLY_					0	0	0			REV__ENSG00000113971|ENST00000337331|NPHP3	REV__ENSG00000113971|ENST00000337331|NPHP3	MULTI-MSMS	A375_MHC_IP_R2	2	655.20556640625	2	654.806956	1307.59936	-1.0806	-0.00070759	0.062687	4.1048E-05	-1.0179	-0.00066654	654.8066688795229	51.616	0.35516	52.368	52.169	52.524	0.75225					10	6	2	0	0	0	0.59391	1	19454	19454		23.79	2.1996	1	2715000	+		39971	17810	29392	29627	38922	38922					-0.0421362126664917
QDCMGESLGMS	11	Unmodified	_QDCMGESLGMS_					0	0	0		ILDR2|p.R65C|1|0.26|ENSG00000143195|chr1:166957955-166957955|G/A|missense_variant	ILDR2|p.R65C|1|0.26|ENSG00000143195|chr1:166957955-166957955|G/A|missense_variant	ILDR2|p.R65C|1|0.26|ENSG00000143195|chr1:166957955-166957955|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	578.6363525390625	2	579.217217	1156.41988	-0.39547	-0.00022906	3.8775	0.0022459	3.4821	0.0020169	579.2212647731334	84.445	0.15234	84.445	84.341	84.494	0					4	2	2	0	0	0	0.99227	1	30945	30945		5.7319	0	1	428590			39972	14162	29393	29628	38923	38923					-0.1520728814211907
QDDEDDDEL	9	Unmodified	_QDDEDDDEL_					0	0	0		ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	547.6788330078125	2	547.19383	1092.37311	-0.62695	-0.00034306	-0.95452	-0.00052231	-1.5815	-0.00086537	547.1929034781249	85.441	0.20473	86.177	86.085	86.29	0.73601					5	3	2	0	0	0	0.55818	1	32459	32459		16.942	0	1	849600			39973	2872	29394	29629	38924	38924					-0.16938409896420126
QDDEFDMD	8	Unmodified	_QDDEFDMD_					0	0	0			REV__nc|ENSG00000189195|Q5XKL5|BTBD8	REV__nc|ENSG00000189195|Q5XKL5|BTBD8	MSMS	A375_MHC_IP_R2	2	507.7112121582031	2	507.671479	1013.32841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.22	1	81.964	81.464	82.464	0.74474								0	0	0	0.16876	1	30840	30840		2.3027	0	1		+		39974	27432	29395	29630	38925	38925					-0.1777251224344809
QDDFEEAK	8	Unmodified	_QDDFEEAK_					0	0	0		ENSG00000100209|ENST00000216027|HSCB	ENSG00000100209|ENST00000216027|HSCB	ENSG00000100209|ENST00000216027|HSCB	MULTI-SECPEP	A375_MHC_IP_R1	1	491.46258544921875	2	491.211629	980.408705	-0.34089	-0.00016745	-0.3383	-0.00016618	-0.6792	-0.00033363	491.21144489497027	34.682	0.20094	34.682	34.507	34.708	0					5	3	2	0	0	0	0.972	1	11404	11404		8.5933	0	1	1106900			39975	2133	29396	29631	38926	38926					-0.08228282858090097
QDDHFSMEEY	10	Unmodified	_QDDHFSMEEY_					0	0	0			REV__ENSG00000215045|ENST00000457091|GRID2IP	REV__ENSG00000215045|ENST00000457091|GRID2IP	MULTI-SECPEP	A375_MHC_IP_R1	1	433.9383239746094	3	434.164404	1299.47138	-0.37165	-0.00016136	0.95835	0.00041608	0.5867	0.00025472	434.499043271588	84.723	0.61398	84.723	84.391	85.005	0					13	11	2	0	0	0	0.93733	1	31025	31025		5.4027	2.7715	1	903660	+		39976	22669	29397	29632	38927	38927					-0.16637504852178608
QDDHFSMEEY	10	Unmodified	_QDDHFSMEEY_					0	0	0			REV__ENSG00000215045|ENST00000457091|GRID2IP	REV__ENSG00000215045|ENST00000457091|GRID2IP	MULTI-SECPEP	A375_MHC_IP_R2	2	433.9386901855469	3	434.164404	1299.47138	-0.1832	-7.9538E-05	0.38743	0.00016821	0.20423	8.8669E-05	434.49887250717865	84.103	0.41072	84.842	84.611	85.022	0.73962					12	7	2	0	0	0	0.93873	1	31952	31952		5.0475	5.0475	1	1444600	+		39977	22669	29397	29632	38928	38928					-0.16637504852178608
QDDKEGKLY	9	Unmodified	_QDDKEGKLY_					0	0	0		tr|U7SV10|U7SV10_FUSNUMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferaseTrmFOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmFOPE=3SV=1	tr|U7SV10|U7SV10_FUSNUMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferaseTrmFOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmFOPE=3SV=1	tr|U7SV10|U7SV10_FUSNUMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferaseTrmFOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmFOPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	547.6560668945312	2	548.269478	1094.5244	-0.82074	-0.00044998	0.28539	0.00015647	-0.53535	-0.00029352	548.2695660987472	31.128	0.45856	31.846	31.669	32.128	0.71857					15	8	2	0	0	0	0.73363	1	10975	10975		3.5965	0.60125	1	3176100			39978	29782	29398	29633	38929	38929					-0.019077590072356543
QDDKNQWKQWR	11	Unmodified	_QDDKNQWKQWR_					0	0	0			REV__ENST00000526878.5_1_11:460175-490579:+|nuORF	REV__ENST00000526878.5_1_11:460175-490579:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	767.2750244140625	2	766.373663	1530.73277	-0.53233	-0.00040796	-0.6186	-0.00047408	-1.1509	-0.00088204	766.3731527785612	58.233	0.45724	58.233	58.024	58.481	0					21	8	3	0	0	0	0.73679	1	20928	20928		5.2969	4.1035	1	5286500	+		39979	21312	29399	29634	38930	38930					-0.011363373703034085
QDDSNRKNFDA	11	Unmodified	_QDDSNRKNFDA_					0	0	0		ENSG00000144283|ENST00000389759|PKP4;nc|ENSG00000144283|Q99569-2|PKP4;ENST00000480171.7_1_2:159519375-159537186:+|nuORF	ENSG00000144283|ENST00000389759|PKP4	ENSG00000144283|ENST00000389759|PKP4	MULTI-SECPEP	A375_MHC_IP_R2	2	655.6903076171875	2	655.292005	1308.56946	-1.0566	-0.00069237	-2.7855	-0.0018253	-3.842	-0.0025177	655.290662494734	65.99	0.45897	66.728	66.475	66.934	0.73811					18	8	3	0	0	0	0.71172	1	25050	25050		31.268	10.854	1	1350300			39980	5476	29400	29635	38931	38931					-0.07248560211996846
QDDSQNEDSMD	11	Unmodified	_QDDSQNEDSMD_					0	0	0		nc|ENSG00000140836|Q15911-2|ZFHX3;ENSG00000140836|ENST00000268489|ZFHX3	nc|ENSG00000140836|Q15911-2|ZFHX3	nc|ENSG00000140836|Q15911-2|ZFHX3	MSMS	A375_MHC_IP_R2	2	642.282470703125	2	642.220053	1282.42555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.52	1	84.259	83.759	84.759	0.73962								0	0	0	0.16302	1	31745	31745		2.9952	0	1				39981	5187	29401	29636	38932	38932					-0.2043619482512895
QDDTIEIFHR	10	Unmodified	_QDDTIEIFHR_					0	0	0			REV__ENSG00000164134|ENST00000296543|NAA15	REV__ENSG00000164134|ENST00000296543|NAA15	MULTI-MSMS	A375_MHC_IP_R1	1	638.213134765625	2	637.312209	1272.60986	-0.76939	-0.00049034	0.42259	0.00026932	-0.3468	-0.00022102	637.3123215709934	33.237	0.35389	33.237	33.04	33.393	0					13	6	3	0	0	0	0.60608	1	10859	10859		20.415	2.2682	1	2955700	+		39982	20456	29402	29637	38933	38933					-0.015535938215634815
QDDTIEIFHR	10	Unmodified	_QDDTIEIFHR_					0	0	0			REV__ENSG00000164134|ENST00000296543|NAA15	REV__ENSG00000164134|ENST00000296543|NAA15	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	637.312209	1272.60986	-0.76939	-0.00049034	0.42259	0.00026932	-0.3468	-0.00022102	637.3123215709934	33.237	0.35389	33.237	33.04	33.393	0	-0.0010789	0.00041888	NaN	20.415	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2955700	+		39983	20456	29402	29637							-0.015535938215634815
QDDTIEIFHR	10	Unmodified	_QDDTIEIFHR_					0	0	0			REV__ENSG00000164134|ENST00000296543|NAA15	REV__ENSG00000164134|ENST00000296543|NAA15	MULTI-MATCH	A375_MHC_IP_R2	2		2	637.312209	1272.60986	-0.8233	-0.0005247	-0.1608	-0.00010248	-0.98409	-0.00062717	637.3122223158196	32.502	0.35626	33.239	33.112	33.468	0.73692	0.0010789	-0.00032472	NaN	20.415	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4271400	+		39984	20456	29402	29637							-0.015535938215634815
QDDTKTKKSCE	11	Unmodified	_QDDTKTKKSCE_					0	0	0			REV__nc|ENSG00000141562|Q9UHQ1-2|NARF	REV__nc|ENSG00000141562|Q9UHQ1-2|NARF	MULTI-SECPEP	A375_MHC_IP_R2	2	642.201171875	2	641.800817	1281.58708	-0.93036	-0.00059711	1.4818	0.00095105	0.55148	0.00035394	641.8018668740691	50.159	0.45643	50.913	50.702	51.159	0.75406					14	8	2	0	0	0	0.80621	1	18900	18900		24.991	6.8446	1	2693900	+		39985	27266	29403	29638	38934	38934					-0.04244981001374981
QDDTKTKKSCE	11	Unmodified	_QDDTKTKKSCE_					0	0	0			REV__nc|ENSG00000141562|Q9UHQ1-2|NARF	REV__nc|ENSG00000141562|Q9UHQ1-2|NARF	MULTI-MATCH	A375_MHC_IP_R1	1		2	641.800817	1281.58708	-0.51905	-0.00033313	1.6136	0.0010356	1.0945	0.00070248	641.8017935901302	50.907	0.40483	50.907	50.663	51.068	0	-0.0030524	7.749E-05	NaN	24.991	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2858600	+		39986	27266	29403	29638							-0.04244981001374981
QDDVNGIQSLY	11	Unmodified	_QDDVNGIQSLY_					0	0	0		ENSG00000166670|ENST00000279441|MMP10	ENSG00000166670|ENST00000279441|MMP10	ENSG00000166670|ENST00000279441|MMP10	MSMS	A375_MHC_IP_R2	2	626.2161865234375	2	626.296224	1250.5779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.234	1	50.988	50.488	51.488	0.75406								0	0	0	0.14479	1	18891	18891		23.79	3.3752	1				39987	7098	29404	29639	38935	38935					-0.037370062953641536
QDDYFTSY	8	Unmodified	_QDDYFTSY_					0	0	0			REV__nc|ENSG00000119321|Q5T1M5-3|FKBP15	REV__nc|ENSG00000119321|Q5T1M5-3|FKBP15	MULTI-SECPEP	A375_MHC_IP_R1	1	1038.8035888671875	1	1038.40508	1037.39781	0.18621	0.00019336	-0.014451	-1.5006E-05	0.17176	0.00017835	1038.4039853377308	59.66	0.81237	59.66	59.143	59.955	0					24	15	3	0	0	0	0.85715	1	21460	21460		36.127	12.979	1	2545400	+		39988	18065	29405	29640	38936	38936					-0.11939685232368902
QDDYFTSY	8	Unmodified	_QDDYFTSY_					0	0	0			REV__nc|ENSG00000119321|Q5T1M5-3|FKBP15	REV__nc|ENSG00000119321|Q5T1M5-3|FKBP15	MULTI-MATCH	A375_MHC_IP_R2	2		1	1038.40508	1037.39781	-0.35197	-0.00036549	-0.96253	-0.0009995	-1.3145	-0.001365	1038.4036991306214	59.062	0.65823	59.809	59.59	60.249	0.74714	0.074606	-0.00029523	NaN	36.127	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3404000	+		39989	18065	29405	29640							-0.11939685232368902
QDDYVLEVRH	10	Unmodified	_QDDYVLEVRH_					0	0	0		nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000106278|P23471-3|PTPRZ1;nc|ENSG00000144724|P23470-2|PTPRG;ENSG00000144724|ENST00000474889|PTPRG;ENST00000475012.5_1_3:62203523-62278979:+|nuORF	nc|ENSG00000106278|P23471-2|PTPRZ1;nc|ENSG00000144724|P23470-2|PTPRG	nc|ENSG00000106278|P23471-2|PTPRZ1	MULTI-MSMS	A375_MHC_IP_R2	2	425.6104431152344	3	425.210565	1272.60986	-0.21115	-8.9785E-05	-0.28106	-0.00011951	-0.49222	-0.0002093	425.2104220676694	32.554	0.45745	33.291	33.061	33.518	0.73692					24	8	4	0	0	0	0.42311	1	11578	11578		22.775	0	1	13235000			39990	2679;5509	29406	29641	38937	38937					-0.015535938215862188
QDEAEEEETL	10	Unmodified	_QDEAEEEETL_					0	0	0			REV__FOXR1|p.E139K|1|0.33|ENSG00000176302|chr11:118979472-118979472|G/A|missense_variant	REV__FOXR1|p.E139K|1|0.33|ENSG00000176302|chr11:118979472-118979472|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	597.2078857421875	2	596.74623	1191.47791	-0.33938	-0.00020253	-1.7937	-0.0010704	-2.1331	-0.0012729	596.7445284967041	89.196	0.86311	89.196	88.714	89.577	0					22	14	2	0	0	0	0.94102	1	32851	32851		5.7319	5.7319	1	3127900	+		39991	21399	29407	29642	38938	38938					-0.11017288419839133
QDEDAYKKQF	10	Unmodified	_QDEDAYKKQF_					0	0	0		ENST00000480199.1_1_8:28157565-28157883:+|nuORF	ENST00000480199.1_1_8:28157565-28157883:+|nuORF	ENST00000480199.1_1_8:28157565-28157883:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	635.7088623046875	2	636.298767	1270.58298	-0.85985	-0.00054712	-0.18489	-0.00011764	-1.0447	-0.00066476	636.7998097750883	81.621	0.4046	82.364	82.128	82.533	0.74293					13	7	2	0	0	0	0.74754	1	31044	31044		29.082	12.139	1	1219400			39992	12492	29408	29643	38939	38939					-0.041487024327807376
QDEDEETD	8	Unmodified	_QDEDEETD_					0	0	0		ENST00000479393.2_1_6:138791728-138820433:-|nuORF;ENST00000426841.6_1_6:138768126-138820433:-|nuORF;ENSG00000135540|ENST00000343505|NHSL1;nc|ENSG00000135540|Q5SYE7|NHSL1	ENST00000479393.2_1_6:138791728-138820433:-|nuORF	ENST00000479393.2_1_6:138791728-138820433:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	980.9509887695312	1	980.332706	979.325429	-0.049628	-4.8652E-05	-0.24152	-0.00023677	-0.29115	-0.00028542	980.3354201851134	129.3	0.20172	129.54	129.47	129.67	0.23946					6	3	2	0	0	0	0.972	1	50851	50851		0	0	1	2704900			39993	4694	29409	29644	38940	38940					-0.16506064096608952
QDEERIFKYT	10	Unmodified	_QDEERIFKYT_					0	0	0			REV__ENSG00000184194|ENST00000332582|GPR173	REV__ENSG00000184194|ENST00000332582|GPR173	MULTI-SECPEP	A375_MHC_IP_R2	2	665.2278442382812	2	664.827692	1327.64083	-0.77441	-0.00051485	0.9106	0.00060539	0.13619	9.0544E-05	664.8283133518547	44.263	0.35587	45.032	44.833	45.188	0.7691					11	6	2	0	0	0	0.92076	1	16566	16566		10.151	3.9587	1	2036100	+		39994	21801	29410	29645	38941	38941					-0.00988440507330779
QDEFLHFK	8	Unmodified	_QDEFLHFK_					0	0	0			REV__OCIAD2|p.F112L|1|0.4|ENSG00000145247|chr4:48892819-48892819|A/T|missense_variant	REV__OCIAD2|p.F112L|1|0.4|ENSG00000145247|chr4:48892819-48892819|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	531.932373046875	2	532.263999	1062.51345	-0.9412	-0.00050097	-1.1657	-0.00062046	-2.1069	-0.0011214	532.2622005249739	35.31	0.45465	36.073	35.878	36.333	0.76338					21	8	3	0	0	0	0.8824	1	12836	12836		16.942	2.104	1	2611900	+		39995	27638	29411	29646	38942	38942					-0.015311165908542534
QDEGNRPNE	9	Unmodified	_QDEGNRPNE_					0	0	0			REV__TRAF1|p.K193Sfs*38|1|0.41|ENSG00000056558|chr9:120913457-120913457|C/-|frameshift_variant	REV__TRAF1|p.K193Sfs*38|1|0.41|ENSG00000056558|chr9:120913457-120913457|C/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	529.692626953125	2	529.728509	1057.44246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.544	1	35.298	34.798	35.798	0.75434								0	0	0	0.1535	1	12471	12471		15.847	1.9411	1		+		39996	16423	29412	29647	38943	38943					-0.08395861366307145
QDEIFWAE	8	Unmodified	_QDEIFWAE_					0	0	0		ANGPTL1|p.G467E|1|0.36|ENSG00000116194|chr1:178851205-178851205|C/T|missense_variant	ANGPTL1|p.G467E|1|0.36|ENSG00000116194|chr1:178851205-178851205|C/T|missense_variant	ANGPTL1|p.G467E|1|0.36|ENSG00000116194|chr1:178851205-178851205|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	519.2105102539062	2	519.232364	1036.45018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.373	1	63.116	62.616	63.616	0.74263								0	0	0	0.16876	1	23642	23642		7.9102	0.62092	1				39997	128	29413	29648	38944	38944					-0.06659102098774383
QDEILVDGL	9	Unmodified	_QDEILVDGL_					0	0	0			REV__ENST00000493723.5_1_7:24756537-24789393:-|nuORF	REV__ENST00000493723.5_1_7:24756537-24789393:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.1744079589844	2	501.261122	1000.50769	-0.2248	-0.00011268	2.4554	0.0012308	2.2306	0.0011181	501.76526321597896	51.573	0.35434	51.573	51.322	51.676	0					8	6	2	0	0	0	0.10622	1	18329	18329		49.554	9.6046	1	664710	+		39998	25426	29414	29649	38945	38945					0.007457401068108993
QDEKEQLNEY	10	Unmodified	_QDEKEQLNEY_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MSMS	A375_MHC_IP_R2	2	648.6903076171875	2	648.291139	1294.56773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.85	1	138.91	138.41	139.41	0.059906								0	0	0	0.15451	1	54427	54427		6.2058	0.47393	1				39999	14788	29415	29650	38946	38946					-0.06777614020597866
QDELFLREF	9	Unmodified	_QDELFLREF_					0	0	0			REV__nc|ENSG00000054654|Q8WXH0|SYNE2	REV__nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-SECPEP	A375_MHC_IP_R2	2	599.2006225585938	2	598.800946	1195.58734	-0.26743	-0.00016013	-0.64273	-0.00038487	-0.91016	-0.000545	598.8004457822118	95.047	0.40559	95.797	95.533	95.939	0.75045					11	7	2	0	0	0	0.61452	1	36139	36139		26.268	0	1	1292600	+		40000	16407	29416	29651	38947	38947					-0.0026319321921164374
QDERDEYLWNE	11	Unmodified	_QDERDEYLWNE_					0	0	0			REV__HSPA4L|p.G666R|1|0.4|ENSG00000164070|chr4:127823574-127823574|G/A|missense_variant	REV__HSPA4L|p.G666R|1|0.4|ENSG00000164070|chr4:127823574-127823574|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	499.44512939453125	3	499.547794	1495.62155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.958	1	31.676	31.176	32.176	0.71857								0	0	0	0.16302	1	10917	10917		1.2148	0	1		+		40001	26762	29417	29652	38948	38948					-0.10643441588922542
QDFKCNICGY	10	Unmodified	_QDFKCNICGY_					0	0	0		nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;ENSG00000104447|ENST00000395715|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	MSMS	A375_MHC_IP_R2	2	595.7275390625	2	595.752084	1189.48961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.149	1	54.9	54.4	55.4	0.75099								0	0	0	0.15465	1	20438	20438		5.7319	0	1				40002	2514	29418	29653	38949	38949					-0.09755041411199272
QDFSKELEEL	10	Unmodified	_QDFSKELEEL_					0	0	0		SART3|p.S438F|1|0.35|ENSG00000075856|chr12:108536782-108536782|G/A|missense_variant	SART3|p.S438F|1|0.35|ENSG00000075856|chr12:108536782-108536782|G/A|missense_variant	SART3|p.S438F|1|0.35|ENSG00000075856|chr12:108536782-108536782|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	619.7017211914062	2	619.300975	1236.5874	-0.16434	-0.00010177	0.65577	0.00040612	0.49143	0.00030434	619.3013836679957	49.73	0.61272	49.73	49.54	50.153	0					23	11	3	0	0	0	0.44858	1	17604	17604		31.268	1.4278	1	6935000			40003	29108	29419	29654	38950	38950					-0.021432380098303838
QDFTLEKVPI	10	Unmodified	_QDFTLEKVPI_					0	0	0			REV__ENSG00000125772|ENST00000379019|GPCPD1	REV__ENSG00000125772|ENST00000379019|GPCPD1	MULTI-MSMS	A375_MHC_IP_R1	1	397.6201477050781	3	397.22029	1188.63904	-0.14687	-5.834E-05	0.27931	0.00011095	0.13244	5.2607E-05	397.2203133372033	54.999	0.55777	54.999	54.67	55.228	0					26	10	4	0	0	0	0.64017	1	19645	19645		17.863	6.3453	1	10074000	+		40004	18361	29420	29655	38951	38951					0.05226550474731084
QDFTLEKVPI	10	Unmodified	_QDFTLEKVPI_					0	0	0			REV__ENSG00000125772|ENST00000379019|GPCPD1	REV__ENSG00000125772|ENST00000379019|GPCPD1	MULTI-SECPEP	A375_MHC_IP_R1	1	595.7269287109375	2	595.326796	1188.63904	-0.22858	-0.00013608	-3.5528	-0.0021151	-3.7814	-0.0022512	595.825337540962	51.654	0.66051	51.654	51.322	51.982	0					25	12	3	0	0	0	0.79457	1	18391	18391		20.415	6.5085	1	2856300	+		40005	18361	29420	29655	38952	38952					0.05226550474731084
QDFTLEKVPI	10	Unmodified	_QDFTLEKVPI_					0	0	0			REV__ENSG00000125772|ENST00000379019|GPCPD1	REV__ENSG00000125772|ENST00000379019|GPCPD1	MULTI-SECPEP	A375_MHC_IP_R1	1	595.1719360351562	2	595.326796	1188.63904	-0.41383	-0.00024636	-0.052765	-3.1412E-05	-0.46659	-0.00027778	595.3265697534921	55	0.50644	55	54.67	55.177	0					16	9	3	0	0	0	0.75488	1	19714	19714		13.615	10.018	1	3948100	+		40006	18361	29420	29655	38953	38953					0.05226550474731084
QDFTLEKVPI	10	Unmodified	_QDFTLEKVPI_					0	0	0			REV__ENSG00000125772|ENST00000379019|GPCPD1	REV__ENSG00000125772|ENST00000379019|GPCPD1	MULTI-MSMS	A375_MHC_IP_R2	2	397.6201477050781	3	397.22029	1188.63904	-0.42292	-0.00016799	0.29895	0.00011875	-0.12396	-4.9241E-05	397.2202968083008	54.096	0.71281	54.847	54.557	55.27	0.75105					29	13	3	0	0	0	0.67901	1	20403	20403		14.957	1.4385	1	6791800	+		40007	18361	29420	29655	38954	38954					0.05226550474731084
QDFTLEKVPI	10	Unmodified	_QDFTLEKVPI_					0	0	0			REV__ENSG00000125772|ENST00000379019|GPCPD1	REV__ENSG00000125772|ENST00000379019|GPCPD1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	397.22029	1188.63904	-0.14687	-5.834E-05	0.27931	0.00011095	0.13244	5.2607E-05	397.2203133372033	54.999	0.55777	54.999	54.67	55.228	0	0.075647	-1.4666E-05	NaN	17.863	26	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10074000	+		40008	18361	29420	29655							0.05226550474731084
QDFTLEKVPI	10	Unmodified	_QDFTLEKVPI_					0	0	0			REV__ENSG00000125772|ENST00000379019|GPCPD1	REV__ENSG00000125772|ENST00000379019|GPCPD1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	397.22029	1188.63904	-0.42292	-0.00016799	0.29895	0.00011875	-0.12396	-4.9241E-05	397.2202968083008	54.096	0.71281	54.847	54.557	55.27	0.75105	-0.075647	8.745E-06	NaN	17.863	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6791800	+		40009	18361	29420	29655							0.05226550474731084
QDFVARPKDY	10	Unmodified	_QDFVARPKDY_					0	0	0		ENSG00000144535|ENST00000325385|DIS3L2;nc|ENSG00000144535|Q8IYB7-2|DIS3L2;nc|ENSG00000144535|Q8IYB7-3|DIS3L2	ENSG00000144535|ENST00000325385|DIS3L2	ENSG00000144535|ENST00000325385|DIS3L2	MULTI-MSMS	A375_MHC_IP_R2	2	621.4781494140625	2	619.811845	1237.60914	-0.67286	-0.00041705	0.076077	4.7154E-05	-0.59678	-0.00036989	619.811921015626	67.546	0.81581	68.282	68.001	68.817	0.73631					44	15	4	0	0	0	0.69306	1	25523	25523		13.906	2.4113	1	28272000			40010	5491	29421	29656	38955	38955					-0.0001638847061258275
QDFVARPKDY	10	Unmodified	_QDFVARPKDY_					0	0	0		ENSG00000144535|ENST00000325385|DIS3L2;nc|ENSG00000144535|Q8IYB7-2|DIS3L2;nc|ENSG00000144535|Q8IYB7-3|DIS3L2	ENSG00000144535|ENST00000325385|DIS3L2	ENSG00000144535|ENST00000325385|DIS3L2	MULTI-MATCH	A375_MHC_IP_R1	1		2	619.811845	1237.60914	-0.79209	-0.00049095	0.5103	0.00031629	-0.28179	-0.00017465	619.8121253601569	68.186	0.71049	68.186	67.854	68.565	0	-0.047946	0.00020956	NaN	13.906	37	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29606000			40011	5491	29421	29656							-0.0001638847061258275
QDFYQQCR	8	Unmodified	_QDFYQQCR_					0	0	0		ENSG00000115942|ENST00000234296|ORC2;ENST00000464147.1_1_2:201776026-201778173:-|nuORF	ENSG00000115942|ENST00000234296|ORC2	ENSG00000115942|ENST00000234296|ORC2	MSMS	A375_MHC_IP_R1	1	544.1947021484375	2	544.234916	1086.45528	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.437	1	85.437	84.937	85.937	0								0	0	0	0.16876	1	31312	31312		24.674	0	1				40012	3352	29422	29657	38956	38956					-0.08449121507806012
QDGACVQSV	9	Unmodified	_QDGACVQSV_					0	0	0		nc|ENSG00000188162|Q6ZRI0|OTOG;ENSG00000188162|ENST00000399397|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	MULTI-MSMS	A375_MHC_IP_R1	1	454.1026611328125	2	453.702917	905.391281	0.1748	7.9309E-05	-0.36904	-0.00016744	-0.19424	-8.8127E-05	453.70265584137314	69.793	0.55563	69.793	69.579	70.135	0					19	10	3	0	0	0	0.4867	1	25347	25347		20.454	3.5113	1	2776800			40013	8889	29423	29658	38957	38957					-0.06519901664728422
QDGGRFLG	8	Unmodified	_QDGGRFLG_					0	0	0		ENST00000306480.10_2_4:166024219-166034007:-|nuORF	ENST00000306480.10_2_4:166024219-166034007:-|nuORF	ENST00000306480.10_2_4:166024219-166034007:-|nuORF	MSMS	A375_MHC_IP_R1	1	425.1129150390625	2	425.214309	848.414065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.635	1	75.635	75.135	76.135	0								0	0	0	0.16876	1	27558	27558		9.3474	0	1				40014	10578	29424	29659	38958	38958					-0.016205144849436692
QDGIPCSDSAY	11	Unmodified	_QDGIPCSDSAY_					0	0	0		ENSG00000139985|ENST00000603540|ADAM21	ENSG00000139985|ENST00000603540|ADAM21	ENSG00000139985|ENST00000603540|ADAM21	MULTI-MSMS	A375_MHC_IP_R1	1	578.1788940429688	2	578.234778	1154.455	-0.04092	-2.3662E-05	-0.041871	-2.4211E-05	-0.082791	-4.7873E-05	578.2346549265079	51.599	0.81082	51.599	51.068	51.879	0					25	15	2	0	0	0	0.73284	1	18370	18370		6.1918	0.46	1	2213800			40015	5121	29425	29660	38959	38959					-0.1160458601832488
QDGRFNLFKVQ	11	Unmodified	_QDGRFNLFKVQ_					0	0	0		nc|ENSG00000145216|Q6UN15-4|FIP1L1;nc|ENSG00000145216|Q6UN15-5|FIP1L1;ENSG00000145216|ENST00000337488|FIP1L1;ENST00000513975.5_1_4:54244032-54306933:+|nuORF	nc|ENSG00000145216|Q6UN15-4|FIP1L1	nc|ENSG00000145216|Q6UN15-4|FIP1L1	MULTI-MSMS	A375_MHC_IP_R1	1	676.7615966796875	2	676.359493	1350.70443	-0.83729	-0.00056631	-0.55387	-0.00037462	-1.3912	-0.00094092	676.3592624473605	85.212	0.66096	85.212	84.852	85.513	0					22	12	3	0	0	0	0.52344	1	31191	31191		36.506	10.238	1	3395400			40016	5541	29426	29661	38960	38960					0.04310964720411903
QDGRFNLFKVQ	11	Unmodified	_QDGRFNLFKVQ_					0	0	0		nc|ENSG00000145216|Q6UN15-4|FIP1L1;nc|ENSG00000145216|Q6UN15-5|FIP1L1;ENSG00000145216|ENST00000337488|FIP1L1;ENST00000513975.5_1_4:54244032-54306933:+|nuORF	nc|ENSG00000145216|Q6UN15-4|FIP1L1	nc|ENSG00000145216|Q6UN15-4|FIP1L1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	676.359493	1350.70443	-0.57362	-0.00038797	-0.87568	-0.00059227	-1.4493	-0.00098025	676.3587489366582	84.619	0.50541	85.355	85.069	85.574	0.73602	0.071978	-8.9276E-05	NaN	36.506	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4582900			40017	5541	29426	29661							0.04310964720411903
QDHDCRAA	8	Unmodified	_QDHDCRAA_					0	0	0			REV__ENSG00000135976|ENST00000420699|ANKRD36	REV__ENSG00000135976|ENST00000420699|ANKRD36	MULTI-MSMS	A375_MHC_IP_R1	1	917.3810424804688	1	915.37374	914.366463	-0.33855	-0.0003099	0.041581	3.8062E-05	-0.29697	-0.00027184	915.3739877228938	131.2	0.70825	131.2	130.97	131.68	0					26	13	3	0	0	0	0.77643	1	50616	50616		7.9102	7.9102	1	69448000	+		40018	18907	29427	29662	38961	38961					-0.09414536747465263
QDHDCRAA	8	Unmodified	_QDHDCRAA_					0	0	0			REV__ENSG00000135976|ENST00000420699|ANKRD36	REV__ENSG00000135976|ENST00000420699|ANKRD36	MULTI-MATCH	A375_MHC_IP_R2	2		1	915.37374	914.366463	-0.34534	-0.00031611	0.17452	0.00015976	-0.17081	-0.00015636	915.3740981894717	130.97	0.66283	131.19	131.06	131.72	0.2142	-0.007259	5.493E-05	NaN	7.9102	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65516000	+		40019	18907	29427	29662							-0.09414536747465263
QDHIFKVK	8	Unmodified	_QDHIFKVK_					0	0	0			REV__ENSG00000100075|ENST00000215882|SLC25A1	REV__ENSG00000100075|ENST00000215882|SLC25A1	MULTI-SECPEP	A375_MHC_IP_R2	2	507.6335754394531	2	507.790184	1013.56581	-0.76894	-0.00039046	0.20729	0.00010526	-0.56165	-0.0002852	508.2918358119341	31.383	0.40887	32.102	31.923	32.332	0.71857					15	7	3	0	0	0	0.972	1	11176	11176		2.0598	0	1	3365700	+		40020	17048	29428	29663	38962	38962					0.05957466542747625
QDHKNVCV	8	Unmodified	_QDHKNVCV_					0	0	0		ENSG00000178950|ENST00000314167|GAK;nc|ENSG00000178950|O14976-2|GAK	ENSG00000178950|ENST00000314167|GAK	ENSG00000178950|ENST00000314167|GAK	MSMS	A375_MHC_IP_R2	2	471.6920471191406	2	471.726726	941.4389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.154	1	57.904	57.404	58.404	0.75015								0	0	0	0.16876	1	21608	21608		13.508	0	1				40021	8189	29429	29664	38963	38963					-0.03416202673884072
QDHMQKRLS	9	Unmodified	_QDHMQKRLS_					0	0	0		ENST00000478390.1_1_3:121810579-121810666:+|nuORF	ENST00000478390.1_1_3:121810579-121810666:+|nuORF	ENST00000478390.1_1_3:121810579-121810666:+|nuORF	MSMS	A375_MHC_IP_R1	1	571.8276977539062	2	571.790389	1141.56623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.27	1	78.27	77.77	78.77	0								0	0	0	0.15486	1	28564	28564		8.7454	0.83525	1				40022	12461	29430	29665	38964	38964					0.001105182003129812
QDHSVPSPV	9	Unmodified	_QDHSVPSPV_					0	0	0		ENST00000500741.2_1_12:120929373-120929421:-|nuORF	ENST00000500741.2_1_12:120929373-120929421:-|nuORF	ENST00000500741.2_1_12:120929373-120929421:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	482.6665344238281	2	483.237981	964.461409	-0.13292	-6.4232E-05	-1.1772	-0.00056886	-1.3101	-0.00063309	483.2371789612633	47.895	0.60557	47.895	47.567	48.173	0					16	11	3	0	0	0	0.55359	1	16783	16783		15.847	0	1	955290			40023	12778	29431	29666	38965	38965					-0.022242800046115008
QDIARQKLL	9	Unmodified	_QDIARQKLL_					0	0	0		nc|ENSG00000156414|Q8NDG6-2|TDRD9;ENSG00000156414|ENST00000409874|TDRD9	nc|ENSG00000156414|Q8NDG6-2|TDRD9	nc|ENSG00000156414|Q8NDG6-2|TDRD9	MULTI-SECPEP	A375_MHC_IP_R2	2	543.2267456054688	2	542.827298	1083.64004	-1.0851	-0.00058902	0.13835	7.5102E-05	-0.94675	-0.00051392	542.8273558398071	33.265	0.25451	34.017	33.891	34.146	0.75225					7	4	2	0	0	0	0.75519	1	11947	11947		10.074	0	1	2800400			40024	6191	29432	29667	38966	38966					0.10156809634281672
QDIARQKLL	9	Unmodified	_QDIARQKLL_					0	0	0		nc|ENSG00000156414|Q8NDG6-2|TDRD9;ENSG00000156414|ENST00000409874|TDRD9	nc|ENSG00000156414|Q8NDG6-2|TDRD9	nc|ENSG00000156414|Q8NDG6-2|TDRD9	MULTI-MATCH	A375_MHC_IP_R1	1		2	542.827298	1083.64004	-0.6121	-0.00033226	0.21225	0.00011521	-0.39985	-0.00021705	542.8273021223005	34.14	0.3031	34.14	33.95	34.253	0	0.061355	5.8443E-05	NaN	10.074	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1792200			40025	6191	29432	29667							0.10156809634281672
QDICYYNF	8	Unmodified	_QDICYYNF_					0	0	0		ENSG00000072858|ENST00000264852|SIDT1;nc|ENSG00000072858|Q9NXL6-2|SIDT1;ENSG00000149577|ENST00000324225|SIDT2;nc|ENSG00000149577|Q8NBJ9-2|SIDT2	ENSG00000072858|ENST00000264852|SIDT1	ENSG00000072858|ENST00000264852|SIDT1	MULTI-SECPEP	A375_MHC_IP_R1	1	532.6618041992188	2	533.220943	1064.42733	-0.62187	-0.0003316	-0.33086	-0.00017642	-0.95274	-0.00050802	533.2208362857915	36.127	0.40596	36.127	35.881	36.287	0					12	7	2	0	0	0	0.972	1	12118	12118		0	0	1	1143900			40026	1551	29433	29668	38967	38967					-0.10230444487888235
QDIEDQLYKLE	11	Unmodified	_QDIEDQLYKLE_					0	0	0		ENSG00000171206|ENST00000643721|TRIM8	ENSG00000171206|ENST00000643721|TRIM8	ENSG00000171206|ENST00000643721|TRIM8	MULTI-MSMS	A375_MHC_IP_R2	2	697.7454223632812	2	697.345914	1392.67728	-0.59948	-0.00041805	-0.29473	-0.00020553	-0.89422	-0.00062358	697.345748338957	87.436	0.50457	88.168	87.913	88.418	0.7318					14	9	2	0	0	0	0.66366	1	33265	33265		18.373	3.1246	1	3892300			40027	7581	29434	29669	38968	38968					-0.003356084012921201
QDIFQEQL	8	Unmodified	_QDIFQEQL_					0	0	0		ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	MULTI-SECPEP	A375_MHC_IP_R2	2	511.1531066894531	2	510.753464	1019.49238	-0.72119	-0.00036835	0.0013568	6.9298E-07	-0.71984	-0.00036766	510.75338892901294	80.04	0.70956	80.784	80.453	81.163	0.74474					20	13	2	0	0	0	0.55372	1	30376	30376		48.346	0	1	3304600			40028	6319	29435	29670	38969	38969					-0.016591266903787982
QDIIHGSLF	9	Unmodified	_QDIIHGSLF_					0	0	0			REV__ENST00000367433.9_1_1:196295868-196295955:-|nuORF	REV__ENST00000367433.9_1_1:196295868-196295955:-|nuORF	MSMS	A375_MHC_IP_R1	1	515.1798095703125	2	515.271824	1028.5291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.918	1	73.918	73.418	74.418	0								0	0	0	0.14169	1	26924	26924		29.082	0.59474	1		+		40029	23970	29436	29671	38970	38970					0.015971699261854155
QDITAWQSL	9	Unmodified	_QDITAWQSL_					0	0	0		ENST00000438300.1_1_2:133070568-133076306:+|nuORF;ENSG00000267508|ENST00000614994|ZNF285	ENST00000438300.1_1_2:133070568-133076306:+|nuORF	ENST00000438300.1_1_2:133070568-133076306:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	530.6752319335938	2	531.266739	1060.51892	-1.2195	-0.00064788	0.10782	5.7282E-05	-1.1117	-0.0005906	531.2668490723522	37.279	0.96649	38.05	37.308	38.275	0.7709					24	18	2	0	0	0	0.67539	1	13483	13483		16.149	0	1	1373800			40030	11947	29437	29672	38971	38971					-0.008914377990549838
QDITYQFA	8	Unmodified	_QDITYQFA_					0	0	0		tr|U7SJK9|U7SJK9_FUSNUPhosphonatetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02092PE=3SV=1	tr|U7SJK9|U7SJK9_FUSNUPhosphonatetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02092PE=3SV=1	tr|U7SJK9|U7SJK9_FUSNUPhosphonatetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02092PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	492.45086669921875	2	493.234907	984.455261	-0.34095	-0.00016817	-1.2088	-0.00059624	-1.5498	-0.00076441	493.23439190346403	34.024	0.40562	34.024	33.798	34.203	0					12	7	3	0	0	0	0.8957	1	11165	11165		6.7232	0	1	880070			40031	29460	29438	29673	38972	38972					-0.03758798236151506
QDIVTPLLW	9	Unmodified	_QDIVTPLLW_					0	0	0			REV__ENSG00000103599|ENST00000335894|IQCH	REV__ENSG00000103599|ENST00000335894|IQCH	MULTI-SECPEP	A375_MHC_IP_R1	1	543.2048950195312	2	542.8055	1083.59645	-0.8478	-0.00046019	-0.13355	-7.2491E-05	-0.98134	-0.00053268	542.8053128155391	133.18	0.20415	133.18	133.05	133.25	0					5	3	2	0	0	0	0.46045	1	51380	51380		36.127	0	1	4495100	+		40032	17288	29439	29674	38973	38973					0.05799200137153093
QDIWSPLQDR	10	Unmodified	_QDIWSPLQDR_					0	0	0			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MSMS	A375_MHC_IP_R1	1	629.7147827148438	2	629.314751	1256.61495	-0.49298	-0.00031024	-0.01798	-1.1315E-05	-0.51096	-0.00032156	629.3148655979729	54.441	0.60744	54.441	54.063	54.67	0					13	11	2	0	0	0	0.6502	1	19519	19519		17.113	4.8722	1	1791800	+		40033	22015	29440	29675	38974	38974					-0.0030928995897738787
QDIWSPLQDR	10	Unmodified	_QDIWSPLQDR_					0	0	0			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	629.314751	1256.61495	-0.49298	-0.00031024	-0.01798	-1.1315E-05	-0.51096	-0.00032156	629.3148655979729	54.441	0.60744	54.441	54.063	54.67	0	-0.070622	9.4759E-05	NaN	17.113	13	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1791800	+		40034	22015	29440	29675							-0.0030928995897738787
QDIWSPLQDR	10	Unmodified	_QDIWSPLQDR_					0	0	0			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MATCH	A375_MHC_IP_R2	2		2	629.314751	1256.61495	-1.2219	-0.00076894	-0.17276	-0.00010872	-1.3946	-0.00087766	629.3146099565171	53.832	0.46158	54.583	54.404	54.866	0.75105	0.070622	-0.00010005	NaN	17.113	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1276100	+		40035	22015	29440	29675							-0.0030928995897738787
QDIYTHLV	8	Unmodified	_QDIYTHLV_					0	0	0		nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123170580-123298708:-|nuORF	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1501770019531	2	494.758549	987.502546	-0.45092	-0.00022309	-0.56499	-0.00027953	-1.0159	-0.00050263	494.75819143563245	80.035	0.70956	80.78	80.453	81.163	0.74473					31	13	3	0	0	0	0.44468	1	30388	30388		53.576	0	1	16911000			40036	4830	29441	29676	38975	38975					0.008294810348502324
QDKELIISLHR	11	Unmodified	_QDKELIISLHR_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MSMS	A375_MHC_IP_R2	2	676.5401611328125	2	676.388251	1350.76195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.75	1	105.51	105.01	106.01	0.76308								0	0	0	0.16176	1	39626	39626		9.544	3.8121	1		+		40037	21206	29442	29677	38976	38976					0.10059806925983139
QDKERRRMKRK	11	Unmodified	_QDKERRRMKRK_					0	0	0			REV__nc|ENSG00000002745|Q9UBV4-2|WNT16	REV__nc|ENSG00000002745|Q9UBV4-2|WNT16	MSMS	A375_MHC_IP_R1	1	765.9443969726562	2	765.941525	1529.8685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.773	1	91.773	91.273	92.273	0								0	0	0	0.16352	1	33722	33722		1.1933	0.84271	1		+		40038	16088	29443	29678	38977	38977					0.12475658939479217
QDKFKIQLLQ	10	Unmodified	_QDKFKIQLLQ_					0	0	0			REV__ENSG00000155761|ENST00000336338|SPAG17	REV__ENSG00000155761|ENST00000336338|SPAG17	MSMS	A375_MHC_IP_R1	1	630.8679809570312	2	630.869163	1259.72377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.887	1	75.887	75.387	76.387	0								0	0	0	0.15451	1	27653	27653		6.2058	0	1		+		40039	19938	29444	29679	38978	38978					0.10429921011336774
QDKKNFAK	8	Unmodified	_QDKKNFAK_					0	0	0			REV__ZNF268|p.R763K|1|0.4|ENSG00000090612|chr12:133203974-133203974|G/A|missense_variant	REV__ZNF268|p.R763K|1|0.4|ENSG00000090612|chr12:133203974-133203974|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	489.6706237792969	2	489.771991	977.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.745	1	36.509	36.009	37.009	0.76338								0	0	0	0.16876	1	12979	12979		13.906	4.5229	1		+		40040	29033	29445	29680	38979	38979					0.039765896460380645
QDKKVETLMV	10	Unmodified	_QDKKVETLMV_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	A375_MHC_IP_R2	2	397.62017822265625	3	397.553163	1189.63766	-0.19435	-7.7265E-05	1.5911	0.00063256	1.3968	0.0005553	397.5538513543675	50.986	0.70737	51.74	51.209	51.917	0.75406					23	13	2	0	0	0	0.70651	1	19145	19145		5.4027	0	1	3697500			40041	4058	29446	29681	38980	38980					0.05042593114308147
QDKQRKIY	8	Unmodified	_QDKQRKIY_					0	0	0		ENSG00000173465|ENST00000309328|ZNRD2	ENSG00000173465|ENST00000309328|ZNRD2	ENSG00000173465|ENST00000309328|ZNRD2	MSMS	A375_MHC_IP_R2	2	360.2607727050781	3	360.204974	1077.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.143	1	23.773	23.273	24.273	0.63014								0	0	0	0.16876	1	7403	7403		20.454	10.303	1				40042	7799	29447	29682	38981	38981					0.0573995008314796
QDKYQEAN	8	Unmodified	_QDKYQEAN_					0	0	0			REV__ENSG00000100345|ENST00000216181|MYH9	REV__ENSG00000100345|ENST00000216181|MYH9	MULTI-SECPEP	A375_MHC_IP_R1	1	498.9933166503906	2	498.225071	994.435589	-0.4778	-0.00023805	-0.062823	-3.13E-05	-0.54062	-0.00026935	498.2250771958727	31.195	0.55679	31.195	30.908	31.465	0					14	10	2	0	0	0	0.96266	1	10070	10070		7.2892	4.9865	1	1456100	+		40043	17077	29448	29683	38982	38982					-0.06185174246911629
QDKYVTALY	9	Unmodified	_QDKYVTALY_					0	0	0		nc|ENSG00000173826|Q9H252-3|KCNH6;ENSG00000173826|ENST00000314672|KCNH6;nc|ENSG00000173826|Q9H252-1|KCNH6	nc|ENSG00000173826|Q9H252-3|KCNH6	nc|ENSG00000173826|Q9H252-3|KCNH6	MULTI-SECPEP	A375_MHC_IP_R2	2	551.126708984375	2	550.784764	1099.55498	-0.69196	-0.00038112	-1.008	-0.00055521	-1.7	-0.00093634	550.7851960155618	84.244	0.61047	84.983	84.715	85.325	0.73962					15	11	2	0	0	0	0.69507	1	31959	31959		9.3831	0	1	1491700			40044	7832	29449	29684	38983	38983					0.009180193778092871
QDLDEEGMN	9	Unmodified	_QDLDEEGMN_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MSMS	A375_MHC_IP_R1	1	525.6849975585938	2	525.705854	1049.39715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.131	1	64.131	63.631	64.631	0								0	0	0	0.15486	1	23197	23197		10.824	0	1				40045	7279	29450	29685	38984	38984					-0.12556847943733374
QDLDPHEE	8	Unmodified	_QDLDPHEE_					0	0	0			REV__nc|ENSG00000228970|P0CB48|UBTFL6	REV__nc|ENSG00000228970|P0CB48|UBTFL6	MULTI-MSMS	A375_MHC_IP_R2	2	492.1712646484375	2	491.709254	981.403954	-0.60714	-0.00029854	0.38848	0.00019102	-0.21866	-0.00010752	491.70935406377237	80.862	0.61322	81.607	81.214	81.828	0.74474					18	11	2	0	0	0	0.7754	1	30562	30562		11.64	0	1	1421600	+		40046	27509	29451	29686	38985	38985					-0.08749167000848956
QDLEDELTNS	10	Unmodified	_QDLEDELTNS_					0	0	0			REV__nc|ENSG00000112584|Q96EK7-2|FAM120B	REV__nc|ENSG00000112584|Q96EK7-2|FAM120B	MULTI-MSMS	A375_MHC_IP_R2	2	582.6559448242188	2	582.256765	1162.49898	-0.74588	-0.00043429	-0.95266	-0.00055469	-1.6985	-0.00098899	582.255978290804	52.192	0.55685	52.944	52.677	53.234	0.75225					24	10	3	0	0	0	0.70925	1	19666	19666		8.1555	0	1	3856300	+		40047	17740	29452	29687	38986	38986					-0.0757727832033197
QDLEIGYWY	9	Unmodified	_QDLEIGYWY_					0	0	0			REV__ENSG00000105270|ENST00000360535|CLIP3	REV__ENSG00000105270|ENST00000360535|CLIP3	MULTI-MSMS	A375_MHC_IP_R1	1	593.7183837890625	2	593.774396	1185.53424	-0.39005	-0.0002316	-1.1051	-0.00065618	-1.4951	-0.00088778	594.2761120913362	64.298	0.45461	64.298	63.99	64.444	0					14	8	2	0	0	0	0.27715	1	23241	23241		32.305	9.5692	1	1374300	+		40048	17367	29453	29688	38987	38987					-0.05110571001864628
QDLEIGYWY	9	Unmodified	_QDLEIGYWY_					0	0	0			REV__ENSG00000105270|ENST00000360535|CLIP3	REV__ENSG00000105270|ENST00000360535|CLIP3	MULTI-SECPEP	A375_MHC_IP_R1	1	594.1725463867188	2	593.774396	1185.53424	-0.39005	-0.0002316	-1.1051	-0.00065618	-1.4951	-0.00088778	594.2761120913362	64.298	0.45461	64.298	63.99	64.444	0					14	8	2	0	0	0	0.50702	1	23263	23263		32.305	9.5692	1	1374300	+		40049	17367	29453	29688	38988	38988					-0.05110571001864628
QDLEIGYWY	9	Unmodified	_QDLEIGYWY_					0	0	0			REV__ENSG00000105270|ENST00000360535|CLIP3	REV__ENSG00000105270|ENST00000360535|CLIP3	MULTI-MATCH	A375_MHC_IP_R2	2		2	593.774396	1185.53424	-0.50592	-0.0003004	-0.84649	-0.00050262	-1.3524	-0.00080303	594.2759158102191	63.63	0.50893	64.37	64.038	64.547	0.74022	0.035948	0.00013004	NaN	32.305	15	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1205700	+		40050	17367	29453	29688							-0.05110571001864628
QDLELGPHPRS	11	Unmodified	_QDLELGPHPRS_					0	0	0		ENSG00000172940|ENST00000311856|SLC22A13	ENSG00000172940|ENST00000311856|SLC22A13	ENSG00000172940|ENST00000311856|SLC22A13	MULTI-MSMS	A375_MHC_IP_R2	2	417.9031982421875	3	416.882559	1247.62585	-0.35898	-0.00014965	-0.07086	-2.954E-05	-0.42984	-0.00017919	416.8825287542669	51.937	1.2691	52.689	52.321	53.59	0.75225					66	24	5	0	0	0	0.72801	1	19612	19612		5.8681	0.82062	1	101860000			40051	7750	29454	29689	38989	38989					0.011941124153281635
QDLERLPT	8	Unmodified	_QDLERLPT_					0	0	0		APBA1|p.P303L|1|0.8|ENSG00000107282|chr9:69516303-69516303|G/A|missense_variant	APBA1|p.P303L|1|0.8|ENSG00000107282|chr9:69516303-69516303|G/A|missense_variant	APBA1|p.P303L|1|0.8|ENSG00000107282|chr9:69516303-69516303|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	486.20001220703125	2	486.261456	970.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.145	1	68.881	68.381	69.381	0.73511								0	0	0	0.16272	1	25824	25824		43.858	11.553	1				40052	157	29455	29690	38990	38990					0.021925795465108422
QDLFCRASF	9	Unmodified	_QDLFCRASF_					0	0	0			REV__ENST00000508360.5_1_4:89653076-89671014:-|nuORF	REV__ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MSMS	A375_MHC_IP_R1	1	543.6948852539062	2	543.755484	1085.49641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.224	1	97.224	96.724	97.724	0								0	0	0	0.1499	1	35722	35722		21.747	0	1		+		40053	19106	29456	29691	38991	38991					-0.04291360468323546
QDLFLLAPGI	10	Unmodified	_QDLFLLAPGI_					0	0	0			REV__ENST00000473474.5_1_1:111715860-111726929:+|nuORF	REV__ENST00000473474.5_1_1:111715860-111726929:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	543.1925048828125	2	543.813325	1085.6121	-0.76404	-0.00041549	-2.4402	-0.001327	-3.2043	-0.0017425	543.81183905623	70.329	0.35661	71.063	70.895	71.251	0.73421					10	6	2	0	0	0	0.69172	1	26668	26668		19.257	5.3509	1	922670	+		40054	18764	29457	29692	38992	38992					0.07271486654190085
QDLFRQPTYV	10	Unmodified	_QDLFRQPTYV_					0	0	0			REV__PAPPA|p.G1018R|1|0.79|ENSG00000182752|chr9:116302855-116302855|G/A|missense_variant	REV__PAPPA|p.G1018R|1|0.79|ENSG00000182752|chr9:116302855-116302855|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	634.2266845703125	2	633.827495	1265.64044	-0.68712	-0.00043552	0.29313	0.00018579	-0.394	-0.00024973	633.8275018152708	68.129	0.4593	68.864	68.611	69.07	0.73511					12	8	2	0	0	0	0.87043	1	25829	25829		7.1017	0	1	3134900	+		40055	27714	29458	29693	38993	38993					0.01824184563452036
QDLGIGESRI	10	Unmodified	_QDLGIGESRI_					0	0	0		nc|ENSG00000204217|Q13873-2|BMPR2;ENSG00000204217|ENST00000374580|BMPR2	nc|ENSG00000204217|Q13873-2|BMPR2	nc|ENSG00000204217|Q13873-2|BMPR2	MULTI-SECPEP	A375_MHC_IP_R1	1	543.6848754882812	2	544.290745	1086.56694	-0.57617	-0.0003136	2.5113	0.0013669	1.9351	0.0010533	544.2917585312811	34.129	0.25337	34.129	33.95	34.203	0					8	4	2	0	0	0	0.83355	1	11225	11225		17.113	0	1	2880400			40056	9416	29459	29694	38994	38994					0.027116361209891693
QDLHEYHSGY	10	Unmodified	_QDLHEYHSGY_					0	0	0		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-SECPEP	A375_MHC_IP_R2	2	625.2100219726562	2	624.767634	1247.52072	-1.1058	-0.00069085	-2.4915	-0.0015566	-3.5972	-0.0022474	624.7657375629196	54.073	0.25446	54.824	54.712	54.967	0.75105					7	4	2	0	0	0	0.86608	1	20429	20429		26.268	10.421	1	1462500			40057	2734	29460	29695	38995	38995					-0.093144287810901
QDLHFTPL	8	Unmodified	_QDLHFTPL_					0	0	0		ENSG00000115183|ENST00000263635|TANC1;nc|ENSG00000115183|Q9C0D5-2|TANC1	ENSG00000115183|ENST00000263635|TANC1	ENSG00000115183|ENST00000263635|TANC1	MULTI-MSMS	A375_MHC_IP_R1	1	486.1999206542969	2	485.753267	969.491981	-0.16226	-7.8818E-05	-1.0583	-0.00051406	-1.2205	-0.00059288	485.75309897597305	70.497	0.61404	70.497	70.185	70.8	0					32	11	4	0	0	0	0.68907	1	25613	25613		38.151	7.9264	1	5943600			40058	3279	29461	29696	38996	38996					0.006014983804220719
QDLHFTPL	8	Unmodified	_QDLHFTPL_					0	0	0		ENSG00000115183|ENST00000263635|TANC1;nc|ENSG00000115183|Q9C0D5-2|TANC1	ENSG00000115183|ENST00000263635|TANC1	ENSG00000115183|ENST00000263635|TANC1	MULTI-MSMS	A375_MHC_IP_R1	1	486.2003173828125	2	485.753267	969.491981	-0.052683	-2.5591E-05	-0.2869	-0.00013936	-0.33958	-0.00016495	485.7531778946708	72.094	0.70884	72.094	71.866	72.575	0					21	13	2	0	0	0	0.69583	2	26227	26227;26291		36.044	7.5574	1	2521400			40059	3279	29461	29696	38997;38998	38997					0.006014983804220719
QDLHFTPL	8	Unmodified	_QDLHFTPL_					0	0	0		ENSG00000115183|ENST00000263635|TANC1;nc|ENSG00000115183|Q9C0D5-2|TANC1	ENSG00000115183|ENST00000263635|TANC1	ENSG00000115183|ENST00000263635|TANC1	MULTI-MSMS	A375_MHC_IP_R1	1	486.15277099609375	2	485.753267	969.491981	-0.38209	-0.0001856	0.4649	0.00022583	0.082806	4.0223E-05	485.75324128937723	80.82	0.96459	80.82	80.541	81.506	0					27	18	2	0	0	0	0.38921	1	29611	29611		53.576	17.531	1	7009100			40060	3279	29461	29696	38999	38999					0.006014983804220719
QDLHFTPL	8	Unmodified	_QDLHFTPL_					0	0	0		ENSG00000115183|ENST00000263635|TANC1;nc|ENSG00000115183|Q9C0D5-2|TANC1	ENSG00000115183|ENST00000263635|TANC1	ENSG00000115183|ENST00000263635|TANC1	MULTI-MSMS	A375_MHC_IP_R2	2	486.1997375488281	2	485.753267	969.491981	-0.834	-0.00040512	-0.049266	-2.3931E-05	-0.88327	-0.00042905	485.753264556282	71.318	0.50764	72.052	71.806	72.314	0.73421					17	9	2	0	0	0	0.72008	1	26994	26994		28.487	6.7402	1	3967000			40061	3279	29461	29696	39000	39000					0.006014983804220719
QDLHFTPL	8	Unmodified	_QDLHFTPL_					0	0	0		ENSG00000115183|ENST00000263635|TANC1;nc|ENSG00000115183|Q9C0D5-2|TANC1	ENSG00000115183|ENST00000263635|TANC1	ENSG00000115183|ENST00000263635|TANC1	MULTI-SECPEP	A375_MHC_IP_R2	2	486.1529541015625	2	485.753267	969.491981	-0.52169	-0.00025341	0.25776	0.00012521	-0.26393	-0.00012821	485.7533457402376	69.708	0.66174	70.442	70.031	70.693	0.73421					21	12	2	0	0	0	0.69059	1	26379	26379		38.151	38.151	1	4536500			40062	3279	29461	29696	39001	39001					0.006014983804220719
QDLHFTPL	8	Unmodified	_QDLHFTPL_					0	0	0		ENSG00000115183|ENST00000263635|TANC1;nc|ENSG00000115183|Q9C0D5-2|TANC1	ENSG00000115183|ENST00000263635|TANC1	ENSG00000115183|ENST00000263635|TANC1	MULTI-MATCH	A375_MHC_IP_R2	2		2	485.753267	969.491981	-0.57572	-0.00027966	-0.12539	-6.0909E-05	-0.70111	-0.00034057	485.752991524317	80.04	0.91222	80.784	80.453	81.365	0.74474	-0.018064	-0.00026089	NaN	53.576	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8349600			40063	3279	29461	29696							0.006014983804220719
QDLHGELF	8	Unmodified	_QDLHGELF_					0	0	0			REV__ENSG00000204510|ENST00000697200|PRAMEF7;REV__ENSG00000274764|ENST00000436041|PRAMEF27	REV__ENSG00000204510|ENST00000697200|PRAMEF7	MULTI-MSMS	A375_MHC_IP_R1	1	480.1351013183594	2	479.735074	957.455596	-0.5774	-0.000277	0.41059	0.00019697	-0.16681	-8.0026E-05	479.7352121034831	80.746	0.60867	80.746	80.492	81.1	0					22	11	3	0	0	0	0.69583	1	29490	29490		36.044	5.8194	1	2763200	+		40064	21685;22520	29462	29697	39002	39002					-0.024833785162854838
QDLKLQIL	8	Unmodified	_QDLKLQIL_					0	0	0		ENST00000467703.1_1_3:113796335-113796386:+|nuORF	ENST00000467703.1_1_3:113796335-113796386:+|nuORF	ENST00000467703.1_1_3:113796335-113796386:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	486.15283203125	2	485.800217	969.585882	-0.18821	-9.1433E-05	-0.032949	-1.6007E-05	-0.22116	-0.00010744	485.800186543506	70.571	0.82024	70.571	70.237	71.057	0					24	15	2	0	0	0	0.14018	1	25581	25581		92.822	0	1	7492100			40065	12285	29463	29698	39003	39003					0.09987217482705546
QDLLALIVAQ	10	Unmodified	_QDLLALIVAQ_					0	0	0		ENSG00000131778|ENST00000369258|CHD1L;nc|ENSG00000131778|Q86WJ1-4|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L;nc|ENSG00000131778|Q86WJ1-5|CHD1L	ENSG00000131778|ENST00000369258|CHD1L	ENSG00000131778|ENST00000369258|CHD1L	MULTI-SECPEP	A375_MHC_IP_R2	2	361.9850158691406	3	361.88513	1082.63356	-0.23209	-8.3988E-05	0.3645	0.00013191	0.13241	4.7917E-05	361.88523273810983	32.693	0.45779	33.43	33.213	33.671	0.73692					14	8	2	0	0	0	0.91909	1	11576	11576		5.4027	2.9042	1	2295400			40066	4350	29464	29699	39004	39004					0.09554871682894372
QDLLGNVYFF	10	Unmodified	_QDLLGNVYFF_					0	0	0		DDX60L|p.T1688Pfs*13|1|0.44|ENSG00000181381|chr4:168358206-168358206|T/-|frameshift_variant;ENSG00000181381|ENST00000682922|DDX60L	DDX60L|p.T1688Pfs*13|1|0.44|ENSG00000181381|chr4:168358206-168358206|T/-|frameshift_variant	DDX60L|p.T1688Pfs*13|1|0.44|ENSG00000181381|chr4:168358206-168358206|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	406.2731018066406	3	405.873001	1214.59717	0.048941	1.9864E-05	2.5678	0.0010422	2.6168	0.0010621	405.87298247981704	62.94	0.55483	63.683	63.383	63.938	0.74263					27	10	4	0	0	0	0.93194	1	23881	23881		3.0723	0	1	3039800			40067	731	29465	29700	39005	39005					-0.0015400521383526211
QDLLIKLQ	8	Unmodified	_QDLLIKLQ_					0	0	0			REV__ENSG00000154174|ENST00000284320|TOMM70	REV__ENSG00000154174|ENST00000284320|TOMM70	MULTI-SECPEP	A375_MHC_IP_R1	1	486.199951171875	2	485.800217	969.585882	-0.01919	-9.3227E-06	-0.19798	-9.618E-05	-0.21717	-0.0001055	485.8000978488844	68.944	0.45632	68.944	68.819	69.275	0					13	8	2	0	0	0	0.8824	1	25040	25040		23.148	0	1	1145800	+		40068	19867	29466	29701	39006	39006					0.09987217482705546
QDLLKELLPGG	11	Unmodified	_QDLLKELLPGG_					0	0	0		ENSG00000157653|ENST00000374165|C9orf43	ENSG00000157653|ENST00000374165|C9orf43	ENSG00000157653|ENST00000374165|C9orf43	MULTI-SECPEP	A375_MHC_IP_R2	2	591.2011108398438	2	591.840071	1181.66559	-0.76289	-0.00045151	1.6941	0.0010027	0.93124	0.00055115	591.84088470933	49.148	0.35578	49.905	49.69	50.046	0.75736					11	6	2	0	0	0	0.9889	1	18444	18444		4.897	0	1	1683600			40069	6258	29467	29702	39007	39007					0.08202239366028152
QDLLPATRW	9	Unmodified	_QDLLPATRW_					0	0	0		ENSG00000145217|ENST00000398516|SLC26A1;nc|ENSG00000145217|Q9H2B4-2|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	MULTI-SECPEP	A375_MHC_IP_R1	1	550.6984252929688	2	550.298373	1098.58219	-0.4143	-0.00022799	0.25871	0.00014237	-0.15558	-8.5617E-05	550.2983214890445	35.276	0.50902	35.276	35.064	35.573	0					14	9	2	0	0	0	0.65527	1	11759	11759		12.241	0	1	2745500			40070	5542	29468	29703	39008	39008					0.03684547708826358
QDLLPATRW	9	Unmodified	_QDLLPATRW_					0	0	0		ENSG00000145217|ENST00000398516|SLC26A1;nc|ENSG00000145217|Q9H2B4-2|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	MULTI-MATCH	A375_MHC_IP_R2	2		2	550.298373	1098.58219	-1.0203	-0.00056147	0.27066	0.00014894	-0.74964	-0.00041253	550.2985254484288	34.495	0.40825	35.247	35.006	35.414	0.75225	-0.014366	6.0675E-06	NaN	12.241	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2293000			40071	5542	29468	29703							0.03684547708826358
QDLPPRQDQY	10	Unmodified	_QDLPPRQDQY_					0	0	0			REV__ENSG00000115998|ENST00000264434|C2orf42	REV__ENSG00000115998|ENST00000264434|C2orf42	MSMS	A375_MHC_IP_R2	2	630.3679809570312	2	630.304384	1258.59421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.832	1	55.583	55.083	56.083	0.75075								0	0	0	0.15465	1	20701	20701		5.7319	0	1		+		40072	17929	29469	29704	39009	39009					-0.02473880338629897
QDLQHPRGF	9	Unmodified	_QDLQHPRGF_					0	0	0		ENST00000304932.5_1_13:41495641-41495908:-|nuORF	ENST00000304932.5_1_13:41495641-41495908:-|nuORF	ENST00000304932.5_1_13:41495641-41495908:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6927490234375	2	549.277972	1096.54139	-0.80909	-0.00044442	3.0397	0.0016696	2.2306	0.0012252	549.2789823487277	45.49	0.30223	46.255	46.15	46.453	0.76518					8	5	2	0	0	0	0.59098	1	16978	16978		21.537	9.0054	1	1116500			40073	10565	29470	29705	39010	39010					-0.0030179361078808142
QDLREKSN	8	Unmodified	_QDLREKSN_					0	0	0			REV__L3MBTL4|p.D13N|1|0.23|ENSG00000154655|chr18:6311589-6311589|C/T|missense_variant	REV__L3MBTL4|p.D13N|1|0.23|ENSG00000154655|chr18:6311589-6311589|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	495.1579895019531	2	495.254163	988.493772	-1.0139	-0.00050213	-1.0028	-0.00049664	-2.0167	-0.00099877	495.25253556498205	53.272	1.6832	54.023	53.233	54.916	0.75105					50	32	2	0	0	0	0.70783	1	20112	20112		32.305	3.8186	1	3108500	+		40074	26912	29471	29706	39011	39011					-0.0009349260162707651
QDLRENTEF	9	Unmodified	_QDLRENTEF_					0	0	0		ENSG00000115756|ENST00000307845|HPCAL1;ENSG00000121905|ENST00000373467|HPCA	ENSG00000115756|ENST00000307845|HPCAL1;ENSG00000121905|ENST00000373467|HPCA	ENSG00000115756|ENST00000307845|HPCAL1	MULTI-MSMS	A375_MHC_IP_R1	1	576.8591918945312	2	576.27001	1150.52547	-0.24976	-0.00014393	-0.54648	-0.00031492	-0.79623	-0.00045885	576.2697088510957	76.93	0.9144	76.93	76.522	77.436	0					38	17	3	0	0	0	0.59266	1	27994	27994		15.248	1.6336	1	3910700			40075	3335;3749	29472	29707	39012	39012					-0.043775446383278904
QDLSRNYSL	9	Unmodified	_QDLSRNYSL_					0	0	0			REV__nc|ENSG00000133687|Q8IUR5-3|TMTC1	REV__nc|ENSG00000133687|Q8IUR5-3|TMTC1	MULTI-MSMS	A375_MHC_IP_R1	1	549.1927490234375	2	548.275095	1094.53564	-0.54354	-0.00029801	-0.54255	-0.00029747	-1.0861	-0.00059548	548.2748869037986	73.868	1.0123	73.868	73.235	74.247	0					47	19	4	0	0	0	0.60101	1	26832	26832		14.838	1.3304	1	13013000	+		40076	18728	29473	29708	39013	39013					-0.007849369131008643
QDLTFVHL	8	Unmodified	_QDLTFVHL_					0	0	0		nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1;nc|ENSG00000107263|Q13905-2|RAPGEF1	nc|ENSG00000107263|Q13905|RAPGEF1	nc|ENSG00000107263|Q13905|RAPGEF1	MULTI-MSMS	A375_MHC_IP_R2	2	487.73736572265625	2	486.761092	971.507631	-0.48556	-0.00023635	0.18821	9.1611E-05	-0.29735	-0.00014474	486.7611662072669	68.423	1.623	69.158	68.459	70.082	0.73511					95	31	4	0	0	0	0.66714	1	26030	26030		42.095	2.1372	1	22358000			40077	2733	29474	29709	39014	39014					0.02073784897470432
QDLTTQSVSY	10	Unmodified	_QDLTTQSVSY_					0	0	0			REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	A375_MHC_IP_R2	2	570.6862182617188	2	571.272218	1140.52988	-0.19277	-0.00011013	-2.5353	-0.0014483	-2.728	-0.0015584	571.7710507858307	87.651	0.70827	88.383	88.066	88.774	0.7318					32	13	5	0	0	0	0.91556	1	33339	33339		6.2058	1.8765	1	2227800	+		40078	20541	29475	29710	39015	39015					-0.03476080215409638
QDLTTSDTNR	10	Unmodified	_QDLTTSDTNR_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	A375_MHC_IP_R1	1	576.6700439453125	2	575.770374	1149.52619	-0.34921	-0.00020106	-2.0463	-0.0011782	-2.3955	-0.0013792	576.2708279164428	66.052	0.9668	66.052	65.717	66.684	0					52	18	4	0	0	0	0.69695	1	24094	24094		13.615	1.3742	1	6168300	+		40079	21639	29476	29711	39016	39016					-0.042587499892761116
QDLVGQRW	8	Unmodified	_QDLVGQRW_					0	0	0		nc|nan|Q96M02-2|C10orf90;chr10:126464986-126503957|425|18.39|0.64|4.84|-|ENST00000432642|C10orf90,C10orf90;chr10:126461585-126464696|432|16.8|0.96|4.13|-|ENST00000432642|C10orf90,C10orf90;nc|nan|Q96M02|C10orf90;ENSG00000154493|ENST00000488181|C10orf90;ENST00000368674.5_1_10:128191356-128211334:-|nuORF	nc|nan|Q96M02-2|C10orf90	nc|nan|Q96M02-2|C10orf90	MULTI-SECPEP	A375_MHC_IP_R1	1	500.62109375	2	501.261791	1000.50903	-0.2248	-0.00011268	1.1214	0.00056211	0.8966	0.00044943	501.76526321597896	51.573	0.35434	51.573	51.322	51.676	0					8	6	2	0	0	0	0.84294	1	18294	18294		18.146	0	1	664710			40080	398	29477	29712	39017	39017					0.008794189862328494
QDLWKNATDP	10	Unmodified	_QDLWKNATDP_					0	0	0		ENSG00000176597|ENST00000326505|B3GNT5	ENSG00000176597|ENST00000326505|B3GNT5	ENSG00000176597|ENST00000326505|B3GNT5	MULTI-SECPEP	A375_MHC_IP_R1	1	594.18701171875	2	594.288202	1186.56185	-0.079269	-4.7109E-05	-0.52364	-0.0003112	-0.60291	-0.0003583	594.2881616057075	22.761	0.45191	22.761	22.572	23.024	0					11	8	2	0	0	0	0.92227	1	6114	6114		1.0715	0.5467	1	1316100			40081	8026	29478	29713	39018	39018					-0.023966677416410676
QDLWKNIL	8	Unmodified	_QDLWKNIL_					0	0	0		ENST00000263849.8_1_8:79578301-79590832:+|nuORF	ENST00000263849.8_1_8:79578301-79590832:+|nuORF	ENST00000263849.8_1_8:79578301-79590832:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	515.1792602539062	2	515.290017	1028.56548	-1.1267	-0.00058056	1.5084	0.00077725	0.38172	0.0001967	515.2908311483644	58.901	0.35506	59.648	59.387	59.742	0.74714					8	6	2	0	0	0	0.8957	1	22214	22214		21.747	3.6117	1	637230			40082	10325	29479	29714	39019	39019					0.05234046822897653
QDLWPEQG	8	Unmodified	_QDLWPEQG_					0	0	0		ENSG00000269067|ENST00000594710|ZNF728;ENST00000600766.1_3_19:23032061-23041232:+|nuORF;ENSG00000268696|ENST00000600766|ZNF723;ZNF208|p.E92K|1|0.29|ENSG00000160321|chr19:21974760-21974760|C/T|missense_variant;ZNF728|p.L113*|1|0.43|ENSG00000269067|chr19:22976999-22976999|A/-|frameshift_variant;nc|ENSG00000213096|O75437-2|ZNF254;ENSG00000118620|ENST00000261560|ZNF430;ENSG00000213096|ENST00000357002|ZNF254;ZNF208|p.H1047Ifs*87|1|0.47|ENSG00000160321|chr19:21971895-21971895|G/-|frameshift_variant;ENSG00000160321|ENST00000397126|ZNF208;ENSG00000183850|ENST00000597761|ZNF730;nc|ENSG00000160321|O43345-2|ZNF208	ENSG00000269067|ENST00000594710|ZNF728;ENSG00000183850|ENST00000597761|ZNF730;nc|ENSG00000160321|O43345-2|ZNF208	ENSG00000269067|ENST00000594710|ZNF728	MSMS	A375_MHC_IP_R2	2	486.666748046875	2	486.724707	971.43486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.333	1	70.068	69.568	70.568	0.73421								0	0	0	0.16876	1	26274	26274		11.64	0	1				40083	9977;8536;14711	29480	29715	39020	39020					-0.051999688959540435
QDLWPQLS	8	Unmodified	_QDLWPQLS_					0	0	0		ENSG00000196449|ENST00000373044|YRDC	ENSG00000196449|ENST00000373044|YRDC	ENSG00000196449|ENST00000373044|YRDC	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1501770019531	2	493.750724	985.486896	-0.46963	-0.00023188	-0.52981	-0.0002616	-0.99944	-0.00049347	493.75045842280275	80.04	0.96323	80.784	80.453	81.416	0.74474					27	18	2	0	0	0	0.6033	1	30388	30388		47.749	5.6541	1	6637700			40084	9042	29481	29716	39021	39021					-0.006428054821981277
QDLYCMVV	8	Unmodified	_QDLYCMVV_					0	0	0		ENSG00000134780|ENST00000257215|DAGLA	ENSG00000134780|ENST00000257215|DAGLA	ENSG00000134780|ENST00000257215|DAGLA	MULTI-MSMS	A375_MHC_IP_R2	2	486.1220397949219	2	485.722264	969.429975	-0.49814	-0.00024196	-0.53782	-0.00026123	-1.036	-0.00050319	485.7221309915913	68.902	1.2149	69.637	69.07	70.285	0.73511					62	23	4	0	0	0	0.7338	1	26002	26002		24.674	4.2203	1	20430000			40085	4609	29482	29717	39022	39022					-0.055963123545780036
QDMAKYPYSAD	11	Unmodified	_QDMAKYPYSAD_					0	0	0			REV__nc|ENSG00000163131|P25774-2|CTSS	REV__nc|ENSG00000163131|P25774-2|CTSS	MULTI-SECPEP	A375_MHC_IP_R2	2	645.1787719726562	2	644.779353	1287.54415	-1.2497	-0.00080576	-0.0076457	-4.9298E-06	-1.2573	-0.00081069	644.7795051371718	29.644	0.30108	30.343	30.236	30.537	0.69872					7	5	2	0	0	0	0.99018	1	10415	10415		7.609	3.6646	1	2635600	+		40086	20341	29483	29718	39023	39023					-0.08811751058783557
QDMAKYPYSAD	11	Unmodified	_QDMAKYPYSAD_					0	0	0			REV__nc|ENSG00000163131|P25774-2|CTSS	REV__nc|ENSG00000163131|P25774-2|CTSS	MULTI-MATCH	A375_MHC_IP_R1	1		2	644.779353	1287.54415	-0.77256	-0.00049813	-0.11624	-7.4946E-05	-0.88879	-0.00057308	645.2807780212488	30.478	0.30209	30.478	30.351	30.653	0	0.06766	-6.8656E-05	NaN	7.609	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1932400	+		40087	20341	29483	29718							-0.08811751058783557
QDMVEQINVY	10	Unmodified	_QDMVEQINVY_					0	0	0			REV__ENSG00000072657|ENST00000261180|TRHDE	REV__ENSG00000072657|ENST00000261180|TRHDE	MULTI-MSMS	A375_MHC_IP_R2	2	620.6896362304688	2	619.789721	1237.56489	-0.843	-0.00052248	-1.3234	-0.00082022	-2.1664	-0.0013427	620.2910628382054	72.438	0.75963	73.174	72.771	73.53	0.7354					31	14	3	0	0	0	0.70329	1	27509	27509		10.824	1.4408	1	2686600	+		40088	16607	29484	29719	39024	39024					-0.044391606791123195
QDNCCGCCGHE	11	Unmodified	_QDNCCGCCGHE_					0	0	0		TM4SF1|p.D74N|1|0.19|ENSG00000169908|chr3:149375727-149375727|C/T|missense_variant	TM4SF1|p.D74N|1|0.19|ENSG00000169908|chr3:149375727-149375727|C/T|missense_variant	TM4SF1|p.D74N|1|0.19|ENSG00000169908|chr3:149375727-149375727|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	584.6665649414062	2	584.667368	1167.32018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.262	1	20.872	20.372	21.372	0.61029								0	0	0	0.1636	1	6293	6293		0	0	1				40089	29350	29485	29720	39025	39025					-0.2567842902774373
QDNCDDPC	8	Unmodified	_QDNCDDPC_					0	0	0			REV__nc|ENSG00000168477|P22105-1|TNXB	REV__nc|ENSG00000168477|P22105-1|TNXB	MSMS	A375_MHC_IP_R1	1	455.15020751953125	2	455.139292	908.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.354	1	59.354	58.854	59.854	0								0	0	0	0.16876	1	21348	21348		0.79363	0.10326	1		+		40090	20858	29486	29721	39026	39026					-0.1937699060124487
QDNENVVNEY	10	Unmodified	_QDNENVVNEY_					0	0	0		CON__P02676	CON__P02676	CON__P02676	MULTI-MSMS	A375_MHC_IP_R2	2	612.6608276367188	2	612.262382	1222.51021	-0.61991	-0.00037955	-0.077944	-4.7722E-05	-0.69785	-0.00042727	612.2623207025667	55.41	0.96717	56.161	55.83	56.797	0.75075					57	18	4	0	0	0	0.56097	2	20858	20858;21093		23.79	12.241	1	43956000		+	40091	584	29487	29722	39027;39028	39027					-0.09214456226186485
QDNTGLQSI	9	Unmodified	_QDNTGLQSI_					0	0	0			REV__ENST00000253401.10_1_X:62974617-62974755:-|nuORF	REV__ENST00000253401.10_1_X:62974617-62974755:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	975.3631591796875	1	975.474165	974.466889	0.1261	0.00012301	-3.4136	-0.0033299	-3.2875	-0.0032069	975.4699528740317	99.549	0.96018	99.549	98.964	99.925	0					26	18	3	0	0	0	0.25276	1	36459	36459		34.102	1.9855	1	7386300	+		40092	23136	29488	29723	39029	39029					-0.021366012128055445
QDNTGLQSI	9	Unmodified	_QDNTGLQSI_					0	0	0			REV__ENST00000253401.10_1_X:62974617-62974755:-|nuORF	REV__ENST00000253401.10_1_X:62974617-62974755:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	975.474165	974.466889	0.1261	0.00012301	-3.4136	-0.0033299	-3.2875	-0.0032069	975.4699528740317	99.549	0.96018	99.549	98.964	99.925	0	-0.015826	-0.00023884	NaN	34.102	26	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7386300	+		40093	23136	29488	29723							-0.021366012128055445
QDPGMPMGSM	10	Unmodified	_QDPGMPMGSM_					0	0	0			REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	MSMS	A375_MHC_IP_R1	1	525.6843872070312	2	525.706288	1049.39802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.254	1	69.254	68.754	69.754	0								0	0	0	0.14925	1	25128	25128		19.257	7.6167	1		+		40094	18275	29489	29724	39030	39030					-0.1247004810004455
QDPPGIPRTH	10	Unmodified	_QDPPGIPRTH_					0	0	0		ENST00000246911.6_1_17:41158909-41165134:+|nuORF	ENST00000246911.6_1_17:41158909-41165134:+|nuORF	ENST00000246911.6_1_17:41158909-41165134:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	373.2807922363281	3	373.196478	1116.56761	0.39909	0.00014894	-0.55812	-0.00020829	-0.15903	-5.9348E-05	373.19628603863134	33.673	0.35122	33.673	33.547	33.898	0					11	6	2	0	0	0	0.92514	1	10971	10971		1.2148	0.4383	1	1073700			40095	10191	29490	29725	39031	39031					0.013984755607225452
QDPPGIPRTH	10	Unmodified	_QDPPGIPRTH_					0	0	0		ENST00000246911.6_1_17:41158909-41165134:+|nuORF	ENST00000246911.6_1_17:41158909-41165134:+|nuORF	ENST00000246911.6_1_17:41158909-41165134:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	373.196478	1116.56761	0.33585	0.00012534	-0.28873	-0.00010775	0.047112	1.7582E-05	373.1963219228731	32.923	0.40717	33.66	33.417	33.825	0.73691	-0.0067378	0.00010497	NaN	1.2148	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1514400			40096	10191	29490	29725							0.013984755607225452
QDPVVHVAIY	10	Unmodified	_QDPVVHVAIY_					0	0	0			REV__ENST00000498385.1_1_22:24236898-24237290:+|nuORF	REV__ENST00000498385.1_1_22:24236898-24237290:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	571.17041015625	2	570.806031	1139.59751	-0.31722	-0.00018107	-0.34181	-0.00019511	-0.65903	-0.00037618	571.3057535326393	77.275	0.35342	77.275	77.083	77.436	0					13	6	3	0	0	0	0.87163	1	28206	28206		5.7319	0.43497	1	1069900	+		40097	22783	29491	29726	39032	39032					0.0332941450603812
QDQARELSY	9	Unmodified	_QDQARELSY_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-SECPEP	A375_MHC_IP_R2	2	554.6419067382812	2	555.264727	1108.5149	-0.87577	-0.00048628	2.2871	0.0012699	1.4113	0.00078366	555.2651745692092	40.498	0.81362	41.273	40.98	41.794	0.77451					24	11	3	0	0	0	0.63327	1	15184	15184		24.021	10.115	1	3779900			40098	8133	29492	29727	39033	39033					-0.03501527292746687
QDQGNIFY	8	Unmodified	_QDQGNIFY_					0	0	0			REV__nc|ENSG00000215041|Q96JN8-2|NEURL4	REV__nc|ENSG00000215041|Q96JN8-2|NEURL4	MULTI-SECPEP	A375_MHC_IP_R2	2	493.1242980957031	2	492.724707	983.43486	-0.45733	-0.00022534	-0.35052	-0.00017271	-0.80786	-0.00039805	492.7243708425404	42.164	0.5626	42.936	42.553	43.116	0.7724					13	10	2	0	0	0	0.95423	1	15717	15717		1.8442	0.19162	1	1682900	+		40099	22668	29493	29728	39034	39034					-0.057519688959587256
QDQIKFPST	9	Unmodified	_QDQIKFPST_					0	0	0			REV__ENST00000507713.1_1_5:94775848-94776172:+|nuORF	REV__ENST00000507713.1_1_5:94775848-94776172:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	531.666015625	2	532.274564	1062.53457	-0.64021	-0.00034077	2.4098	0.0012827	1.7696	0.00094189	532.7773129422213	63.672	0.35601	64.413	64.191	64.547	0.74023					9	6	2	0	0	0	0.61452	1	24166	24166		20.415	3.3016	1	5364800	+		40100	25571	29494	29729	39035	39035					0.0058084871798200766
QDQKRKIV	8	Unmodified	_QDQKRKIV_					0	0	0		ENST00000502269.1_1_5:78908746-78909782:+|nuORF;ENST00000515807.5_1_5:78908331-78915435:+|nuORF	ENST00000502269.1_1_5:78908746-78909782:+|nuORF	ENST00000502269.1_1_5:78908746-78909782:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.9803161621094	2	507.806365	1013.59818	-0.77956	-0.00039587	0.45788	0.00023251	-0.32168	-0.00016335	508.30832917043887	38.22	0.40775	38.22	38.016	38.423	0					10	7	2	0	0	0	0.972	1	12960	12960		12.532	0	1	3181400			40101	12789	29495	29730	39036	39036					0.0919225394576415
QDQLEKPQNE	10	Unmodified	_QDQLEKPQNE_					0	0	0		ENSG00000135549|ENST00000368452|PKIB;nc|ENSG00000135549|Q9C010-2|PKIB	ENSG00000135549|ENST00000368452|PKIB	ENSG00000135549|ENST00000368452|PKIB	MSMS	A375_MHC_IP_R2	2	614.9415283203125	2	614.793849	1227.57314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.073	1	60.82	60.32	61.32	0.74714								0	0	0	0.14998	1	22736	22736		7.1017	2.5729	1				40102	4696	29496	29731	39037	39037					-0.03153890438147755
QDQNEDCLY	9	Unmodified	_QDQNEDCLY_					0	0	0		nc|ENSG00000165246|Q8NFZ3|NLGN4Y;ENSG00000146938|ENST00000381095|NLGN4X;nc|ENSG00000146938|Q8N0W4-2|NLGN4X;ENSG00000165246|ENST00000684976|NLGN4Y;nc|ENSG00000165246|Q8NFZ3-3|NLGN4Y;nc|ENSG00000165246|Q8NFZ3-4|NLGN4Y;ENST00000476359.1_1_Y:16733999-16863586:+|nuORF	nc|ENSG00000165246|Q8NFZ3|NLGN4Y	nc|ENSG00000165246|Q8NFZ3|NLGN4Y	MSMS	A375_MHC_IP_R1	1	564.0752563476562	2	564.219128	1126.4237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.676	1	85.676	85.176	86.176	0								0	0	0	0.15486	1	31403	31403		11.64	4.9171	1				40103	5646	29497	29732	39038	39038					-0.134451590523895
QDQQRSEELA	10	Unmodified	_QDQQRSEELA_					0	0	0		ENSG00000116885|ENST00000235532|OSCP1;nc|ENSG00000116885|Q8WVF1|OSCP1;ENST00000471369.1_1_1:36883742-36884717:-|nuORF	ENSG00000116885|ENST00000235532|OSCP1	ENSG00000116885|ENST00000235532|OSCP1	MSMS	A375_MHC_IP_R1	1	602.3467407226562	2	602.283648	1202.55274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.04	1	137.04	136.54	137.54	0								0	0	0	0.15308	1	52765	52765		10.824	0.75	1				40104	3441	29498	29733	39039	39039					-0.04043061097922873
QDRAEWLPRRV	11	Unmodified	_QDRAEWLPRRV_					0	0	0			REV__ENST00000290902.9_1_4:1161287-1161425:-|nuORF	REV__ENST00000290902.9_1_4:1161287-1161425:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	713.7876586914062	2	713.389116	1424.76368	-0.6664	-0.0004754	-1.0451	-0.00074554	-1.7115	-0.0012209	713.3883913725693	65.021	0.45543	65.021	64.75	65.206	0					19	8	3	0	0	0	0.7362	1	23567	23567		2.9952	0	1	1766600	+		40105	23360	29499	29734	39040	39040					0.06828860734572118
QDRAFGDLTNL	11	Unmodified	_QDRAFGDLTNL_					0	0	0		nc|ENSG00000165300|O94991-2|SLITRK5;SLITRK5|p.R841Pfs*33|1|0.77|ENSG00000165300|chr13:87677905-87677906|-/C|frameshift_variant;ENSG00000165300|ENST00000683689|SLITRK5	nc|ENSG00000165300|O94991-2|SLITRK5	nc|ENSG00000165300|O94991-2|SLITRK5	MULTI-MSMS	A375_MHC_IP_R1	1	625.7122192382812	2	625.312209	1248.60986	-0.17653	-0.00011039	-0.40846	-0.00025542	-0.585	-0.00036581	625.3120983419582	69.892	0.50555	69.892	69.579	70.085	0					21	9	3	0	0	0	0.57632	1	25385	25385		30.703	1.2663	1	2045400			40106	6938	29500	29735	39041	39041					-0.004495938215768547
QDRAHACPAV	10	Unmodified	_QDRAHACPAV_					0	0	0		ENSG00000102195|ENST00000218316|GPR50	ENSG00000102195|ENST00000218316|GPR50	ENSG00000102195|ENST00000218316|GPR50	MULTI-SECPEP	A375_MHC_IP_R2	2	534.6355590820312	2	534.256182	1066.49781	-1.0447	-0.00055812	-2.5007	-0.001336	-3.5454	-0.0018941	534.2549066511394	36.461	0.81513	37.232	36.698	37.513	0.7709					27	15	2	0	0	0	0.70528	1	13055	13055		7.1017	1.3699	1	7559600			40107	2363	29501	29736	39042	39042					-0.03277726379587875
QDREGFTW	8	Unmodified	_QDREGFTW_					0	0	0		ENSG00000131899|ENST00000316843|LLGL1	ENSG00000131899|ENST00000316843|LLGL1	ENSG00000131899|ENST00000316843|LLGL1	MULTI-SECPEP	A375_MHC_IP_R1	1	520.1353759765625	2	519.735606	1037.45666	-0.58682	-0.00030499	0.1184	6.1535E-05	-0.46843	-0.00024346	519.7356450083378	58.83	0.61088	58.83	58.481	59.092	0					19	11	2	0	0	0	0.73227	1	21121	21121		46.021	46.021	1	2557500			40108	4355	29502	29737	39043	39043					-0.06057164147364347
QDRKKLRPF	9	Unmodified	_QDRKKLRPF_					0	0	0			REV__ENST00000337656.8_3_10:35468072-35477136:+|nuORF	REV__ENST00000337656.8_3_10:35468072-35477136:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	593.7279663085938	2	594.354014	1186.69348	-0.27226	-0.00016182	0.082199	4.8855E-05	-0.19006	-0.00011297	594.3539623471395	56.131	0.6067	56.131	55.891	56.498	0					17	11	3	0	0	0	0.78348	1	20167	20167		1.8442	0.36234	1	2073200	+		40109	23694	29503	29738	39044	39044					0.107596071368107
QDRKLVELKTI	11	Unmodified	_QDRKLVELKTI_					0	0	0			REV__nc|ENSG00000144369|Q6P995-2|FAM171B	REV__nc|ENSG00000144369|Q6P995-2|FAM171B	MULTI-SECPEP	A375_MHC_IP_R2	2	447.67254638671875	3	448.273276	1341.798	-0.13541	-6.07E-05	3.2831	0.0014717	3.1477	0.001411	448.60835991764696	137.67	0.25203	137.75	137.56	137.81	0.083969					6	4	2	0	0	0	1.0012	1	54002	54002		0.064406	0	1	565180	+		40110	19420	29504	29739	39045	39045					0.140772641028434
QDRLLKDML	9	Unmodified	_QDRLLKDML_					0	0	0		ENSG00000196074|ENST00000357552|SYCP2	ENSG00000196074|ENST00000357552|SYCP2	ENSG00000196074|ENST00000357552|SYCP2	MULTI-SECPEP	A375_MHC_IP_R1	1	377.28155517578125	3	377.877869	1130.61178	0.33681	0.00012727	1.4266	0.00053907	1.7634	0.00066635	378.2124389349418	74.386	0.8118	74.386	74.045	74.857	0					22	15	2	0	0	0	0.79429	1	27267	27267		7.1017	4.1065	1	956720			40111	8989	29505	29740	39046	39046					0.05169743662690962
QDRVRALSGPY	11	Unmodified	_QDRVRALSGPY_					0	0	0			REV__ENST00000370557.5_1_X:139014736-139014982:-|nuORF	REV__ENST00000370557.5_1_X:139014736-139014982:-|nuORF	MSMS	A375_MHC_IP_R2	2	631.3355102539062	2	631.336018	1260.65748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.583	1	78.326	77.826	78.826	0.74293								0	0	0	0.16249	1	29460	29460		5.7319	1.4026	1		+		40112	24032	29506	29741	39047	39047					0.03758105169299597
QDRYLFYRFLD	11	Unmodified	_QDRYLFYRFLD_					0	0	0		RAPGEF4|p.K283R|1|0.32|ENSG00000091428|chr2:172967288-172967288|A/G|missense_variant	RAPGEF4|p.K283R|1|0.32|ENSG00000091428|chr2:172967288-172967288|A/G|missense_variant	RAPGEF4|p.K283R|1|0.32|ENSG00000091428|chr2:172967288-172967288|A/G|missense_variant	MSMS	A375_MHC_IP_R2	2	512.634765625	3	512.592898	1534.75686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.658	1	40.432	39.932	40.932	0.77451								0	0	0	0.16291	1	14653	14653		3.5927	0.96144	1				40113	15268	29507	29742	39048	39048					0.010875030633542337
QDRYRRRYWIL	11	Unmodified	_QDRYRRRYWIL_					0	0	0		nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-MSMS	A375_MHC_IP_R1	1	406.9399108886719	4	406.975933	1623.87463	-0.14453	-5.8822E-05	1.4011	0.00057023	1.2566	0.00051141	406.97630363034193	20.562	0.45833	20.562	20.232	20.69	0					13	8	2	0	0	0	0.73934	1	5266	5266		0	0	1	1047300			40114	3856	29508	29743	39049	39049					0.08764500442703138
QDRYRRRYWIL	11	Unmodified	_QDRYRRRYWIL_					0	0	0		nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-SECPEP	A375_MHC_IP_R1	1	542.1531372070312	3	542.298819	1623.87463	-0.49026	-0.00026587	0.85824	0.00046542	0.36798	0.00019956	542.2992969862917	20.43	0.81621	20.43	20.079	20.895	0					32	15	3	0	0	0	1.0015	1	5164	5164		0.094841	0.094841	1	1869900			40115	3856	29508	29743	39050	39050					0.08764500442703138
QDRYRRRYWIL	11	Unmodified	_QDRYRRRYWIL_					0	0	0		nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-SECPEP	A375_MHC_IP_R2	2	542.6995849609375	3	542.298819	1623.87463	-1.0928	-0.0005926	1.7211	0.00093335	0.62835	0.00034076	542.2997640877334	18.845	0.12051	19.448	19.413	19.533	0.60308					8	4	3	0	0	0	1.0014	1	5640	5640		0.50596	0.41111	1	93123000			40116	3856	29508	29743	39051	39051					0.08764500442703138
QDSCDADDDC	10	Unmodified	_QDSCDADDDC_					0	0	0			REV__nc|ENSG00000147852|P98155-2|VLDLR	REV__nc|ENSG00000147852|P98155-2|VLDLR	MSMS	A375_MHC_IP_R1	1	543.6619873046875	2	543.652961	1085.29137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.092	1	91.092	90.592	91.592	0								0	0	0	0.15465	1	33470	33470		5.7319	3.8876	1		+		40117	19610	29509	29744	39052	39052					-0.24786551851525473
QDSDSESEDDG	11	Unmodified	_QDSDSESEDDG_					0	0	0		ENSG00000198301|ENST00000356260|SDAD1;nc|ENSG00000198301|Q9NVU7-2|SDAD1;ENST00000395710.5_1_4:76871905-76902632:-|nuORF;ENST00000513089.5_1_4:76886972-76894529:-|nuORF	ENSG00000198301|ENST00000356260|SDAD1	ENSG00000198301|ENST00000356260|SDAD1	MSMS	A375_MHC_IP_R2	2	592.1198120117188	2	592.197101	1182.37965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.628	1	62.373	61.873	62.873	0.74503								0	0	0	0.16124	1	23357	23357		12.241	3.4953	1				40118	9253	29510	29745	39053	39053					-0.20424516735693032
QDSFESIESY	10	Unmodified	_QDSFESIESY_					0	0	0		nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-4|ETS1;nc|ENSG00000134954|P14921-5|ETS1	nc|ENSG00000134954|P14921|ETS1	nc|ENSG00000134954|P14921|ETS1	MULTI-MSMS	A375_MHC_IP_R2	2	603.168701171875	2	602.753858	1203.49316	-0.64622	-0.00038951	-3.947	-0.0023791	-4.5932	-0.0027686	602.7531663356483	35.808	0.25462	36.571	36.384	36.638	0.76338					6	4	2	0	0	0	0.6806	1	12951	12951		14.838	4.0143	1	690020			40119	14614	29511	29746	39054	39054					-0.10044376832001944
QDSGTHGRRCP	11	Unmodified	_QDSGTHGRRCP_					0	0	0			REV__ENSG00000153404|ENST00000637938|PLEKHG4B	REV__ENSG00000153404|ENST00000637938|PLEKHG4B	MULTI-SECPEP	A375_MHC_IP_R1	1	606.6773071289062	2	607.278177	1212.5418	-0.33587	-0.00020397	-0.89584	-0.00054402	-1.2317	-0.00074799	607.277374377164	60.519	1.0695	60.519	60.006	61.075	0					37	20	3	0	0	0	0.99133	1	21945	21945		2.086	2.086	1	8270300	+		40120	19841	29512	29747	39055	39055					-0.05596741953218043
QDSIHVGFVS	10	Unmodified	_QDSIHVGFVS_					0	0	0		nc|ENSG00000069188|Q58EX2-3|SDK2;ENSG00000069188|ENST00000392650|SDK2;nc|ENSG00000069188|Q58EX2-4|SDK2;ENST00000479356.1_1_17:71354047-71433905:-|nuORF;nc|ENSG00000069188|Q58EX2-2|SDK2	nc|ENSG00000069188|Q58EX2-3|SDK2	nc|ENSG00000069188|Q58EX2-3|SDK2	MULTI-SECPEP	A375_MHC_IP_R1	1	544.1553955078125	2	544.772188	1087.52982	-0.41316	-0.00022508	-0.20087	-0.00010943	-0.61403	-0.00033451	544.7719374740911	51.55	0.55933	51.55	51.168	51.728	0					16	10	2	0	0	0	0.77204	1	18247	18247		21.537	5.6898	1	896040			40121	1474	29513	29748	39056	39056					-0.0104403542475211
QDSISLLIW	9	Unmodified	_QDSISLLIW_					0	0	0			REV__ENST00000531819.5_1_1:52237836-52249732:+|nuORF	REV__ENST00000531819.5_1_1:52237836-52249732:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	538.1942749023438	2	537.795132	1073.57571	-0.92219	-0.00049595	0.18958	0.00010195	-0.73261	-0.000394	538.2963694816355	132.19	0.19965	132.19	132.08	132.28	0					9	3	3	0	0	0	0.76827	1	50987	50987		6.7232	0.51738	1	3789700	+		40122	25858	29514	29749	39057	39057					0.0418660975747116
QDSLAQCADFR	11	Unmodified	_QDSLAQCADFR_					0	0	0		ENSG00000100084|ENST00000263208|HIRA;nc|ENSG00000100084|P54198-2|HIRA	ENSG00000100084|ENST00000263208|HIRA	ENSG00000100084|ENST00000263208|HIRA	MULTI-SECPEP	A375_MHC_IP_R1	1	627.99658203125	2	627.282594	1252.55064	-0.56861	-0.00035668	2.2773	0.0014285	1.7087	0.0010718	627.2821572149555	93.794	0.25421	93.794	93.686	93.941	0					5	4	2	0	0	0	0.85086	1	34473	34473		28.495	14.089	1	394040			40123	2113	29515	29750	39058	39058					-0.06553813107439055
QDSLARYFS	9	Unmodified	_QDSLARYFS_					0	0	0		nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT;nc|ENSG00000054392|Q5VTY9-6|HHAT	nc|ENSG00000054392|Q5VTY9-5|HHAT	nc|ENSG00000054392|Q5VTY9-5|HHAT	MULTI-SECPEP	A375_MHC_IP_R2	2	544.1639404296875	2	543.764363	1085.51417	-0.9845	-0.00053534	0.10673	5.8037E-05	-0.87777	-0.0004773	543.7643888513015	33.126	0.61161	33.878	33.635	34.247	0.75225					18	11	3	0	0	0	0.60917	1	11850	11850		19.257	0	1	4035800			40124	1259	29516	29751	39059	39059					-0.025163219418118388
QDSLGNGPLE	10	Unmodified	_QDSLGNGPLE_					0	0	0			REV__ENST00000430760.5_1_7:90237852-90355954:+|nuORF	REV__ENST00000430760.5_1_7:90237852-90355954:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	515.6458129882812	2	515.246003	1028.47745	-0.68572	-0.00035331	0.11982	6.1737E-05	-0.5659	-0.00029158	515.2460099150824	92.883	0.66077	93.622	93.392	94.053	0.73902					29	12	3	0	0	0	0.57505	2	35319	35319;35363		22.736	0.98964	1	7144700	+		40125	23254	29517	29752	39060;39061	39060					-0.03564618558402799
QDSLLEAVRWR	11	Unmodified	_QDSLLEAVRWR_					0	0	0			REV__ENST00000559112.2_1_5:50674766-50679009:-|nuORF	REV__ENST00000559112.2_1_5:50674766-50679009:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	458.6489562988281	3	458.249242	1371.7259	-0.56008	-0.00025665	-0.2788	-0.00012776	-0.83888	-0.00038442	458.2491836399797	35.192	0.30296	35.955	35.778	36.081	0.76338					9	5	2	0	0	0	0.73189	1	12757	12757		3.5927	2.263	1	4151200	+		40126	26149	29518	29753	39062	39062					0.05490349749129564
QDSLPLFSLI	10	Unmodified	_QDSLPLFSLI_					0	0	0			REV__ENST00000409509.5_3_16:67243955-67260901:-|nuORF	REV__ENST00000409509.5_3_16:67243955-67260901:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	567.1611938476562	2	566.816064	1131.61758	-0.28476	-0.00016141	-3.9427	-0.0022348	-4.2275	-0.0023962	566.813254405122	79.391	0.3086	79.391	79.161	79.47	0					7	5	2	0	0	0	0.87163	1	28918	28918		13.906	0	1	1097000	+		40127	24301	29519	29754	39063	39063					0.057031654459933634
QDSLSLVASW	10	Unmodified	_QDSLSLVASW_					0	0	0		ENST00000270357.9_2_2:241517773-241518097:+|nuORF	ENST00000270357.9_2_2:241517773-241518097:+|nuORF	ENST00000270357.9_2_2:241517773-241518097:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	553.12890625	2	553.279846	1104.54514	-0.66119	-0.00036582	2.5564	0.0014144	1.8952	0.0010486	553.2815063421813	83.872	0.25371	83.872	83.736	83.989	0					6	4	2	0	0	0	0.70528	1	30724	30724		26.268	5.8536	1	1454600			40128	10376	29520	29755	39064	39064					-0.0029516862757645868
QDSPYVPNTL	10	Unmodified	_QDSPYVPNTL_					0	0	0			REV__ENSG00000109991|ENST00000263314|P2RX3	REV__ENSG00000109991|ENST00000263314|P2RX3	MULTI-MSMS	A375_MHC_IP_R2	2	568.2161254882812	2	567.277303	1132.54005	-0.40705	-0.00023091	-0.43566	-0.00024714	-0.84271	-0.00047805	567.2770517888015	32.34	0.56063	33.077	32.806	33.367	0.73691					21	10	3	0	0	0	0.67512	1	11537	11537		15.248	0.41021	1	9130000	+		40129	17606	29521	29756	39065	39065					-0.020914724902013404
QDSRKLEEW	9	Unmodified	_QDSRKLEEW_					0	0	0			REV__ENSG00000178395|ENST00000366875|CCDC185	REV__ENSG00000178395|ENST00000366875|CCDC185	MULTI-SECPEP	A375_MHC_IP_R1	1	596.193603515625	2	595.793652	1189.57275	-0.66227	-0.00039458	0.1789	0.00010659	-0.48338	-0.00028799	595.7937371543616	23.813	0.25341	23.813	23.687	23.94	0					8	4	2	0	0	0	0.60917	1	6651	6651		19.257	0	1	7394300	+		40130	21503	29522	29757	39066	39066					-0.01445265367351567
QDSRPRSWCL	10	Unmodified	_QDSRPRSWCL_					0	0	0		nc|ENSG00000006283|O43497-27|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000006283|O43497-8|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-4|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G;nc|ENSG00000006283|O43497-29|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G;nc|ENSG00000006283|O43497-32|CACNA1G;nc|ENSG00000006283|O43497-31|CACNA1G;nc|ENSG00000006283|O43497-5|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-28|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;ENSG00000006283|ENST00000359106|CACNA1G	nc|ENSG00000006283|O43497-27|CACNA1G	nc|ENSG00000006283|O43497-27|CACNA1G	MULTI-SECPEP	A375_MHC_IP_R2	2	623.7091064453125	2	624.301121	1246.58769	-0.70366	-0.00043929	2.1274	0.0013282	1.4238	0.00088887	624.3020594835635	70.011	0.25266	70.745	70.54	70.793	0.73421					6	4	2	0	0	0	0.83355	1	26518	26518		17.113	0.54702	1	854340			40131	911	29523	29758	39067	39067					-0.025740967709907636
QDSSDSGKKAY	11	Unmodified	_QDSSDSGKKAY_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	A375_MHC_IP_R1	1	593.170166015625	2	593.272749	1184.53095	-0.60155	-0.00035688	-1.3258	-0.00078653	-1.9273	-0.0011434	593.2721900566104	39.782	0.55905	39.782	39.491	40.05	0					14	10	2	0	0	0	0.9754	1	13645	13645		2.4985	0	1	1741700			40132	7983	29524	29759	39068	39068					-0.05393865846508561
QDSSLSEDY	9	Unmodified	_QDSSLSEDY_					0	0	0		nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;ENST00000473691.1_1_X:79938122-79975072:-|nuORF;nc|ENSG00000165288|Q6RI45-5|BRWD3	nc|ENSG00000165288|Q6RI45-3|BRWD3	nc|ENSG00000165288|Q6RI45-3|BRWD3	MULTI-SECPEP	A375_MHC_IP_R1	1	1044.054443359375	1	1043.41638	1042.4091	0.14471	0.00015099	0.24354	0.00025411	0.38825	0.0004051	1043.4165653676482	37.056	0.86322	37.056	36.795	37.658	0					23	16	2	0	0	0	0.74412	1	12380	12380		14.838	6.245	1	3637400			40133	6937	29525	29760	39069	39069					-0.11040907928895649
QDSSNQPW	8	Unmodified	_QDSSNQPW_					0	0	0		ENST00000493482.1_1_X:151996387-151997293:-|nuORF	ENST00000493482.1_1_X:151996387-151997293:-|nuORF	ENST00000493482.1_1_X:151996387-151997293:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	480.47186279296875	2	481.204138	960.393724	-0.79254	-0.00038137	0.0468	2.252E-05	-0.74574	-0.00035885	481.20413021034824	35.075	0.55585	35.838	35.627	36.183	0.76338					17	10	2	0	0	0	0.97144	1	12820	12820		2.3027	0	1	5065000			40134	12682	29526	29761	39070	39070					-0.08805729935420459
QDSTHLSPTAF	11	Unmodified	_QDSTHLSPTAF_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	A375_MHC_IP_R1	1	601.6779174804688	2	602.28566	1202.55677	-0.20258	-0.00012201	-0.50986	-0.00030708	-0.71244	-0.00042909	602.2851369573849	44.216	0.56392	44.216	43.959	44.523	0					25	10	3	0	0	0	0.73016	1	15484	15484		8.7454	0.58988	1	3790800	+		40135	21249	29527	29762	39071	39071					-0.03640971604227161
QDSVFEHLL	9	Unmodified	_QDSVFEHLL_					0	0	0			REV__ENSG00000257335|ENST00000475668|MGAM	REV__ENSG00000257335|ENST00000475668|MGAM	MULTI-SECPEP	A375_MHC_IP_R1	1	544.0822143554688	2	544.274564	1086.53457	-0.45256	-0.00024632	0.58581	0.00031884	0.13324	7.2521E-05	544.7764456418349	35.194	0.35592	35.194	35.013	35.369	0					10	6	2	0	0	0	0.75519	1	11664	11664		14.838	14.838	1	1020200	+		40136	22890	29528	29763	39072	39072					-0.005231512819818818
QDSVITDEMNY	11	Unmodified	_QDSVITDEMNY_					0	0	0		ENSG00000001084|ENST00000650454|GCLC	ENSG00000001084|ENST00000650454|GCLC	ENSG00000001084|ENST00000650454|GCLC	MSMS	A375_MHC_IP_R1	1	657.6104736328125	2	657.77955	1313.54455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.092	1	63.092	62.592	63.592	0								0	0	0	0.16203	1	22797	22797		8.1555	0.54658	1				40137	842	29529	29764	39073	39073					-0.09968376129563694
QDSVSVEKK	9	Unmodified	_QDSVSVEKK_					0	0	0			REV__ENSG00000055732|ENST00000370589|MCOLN3;REV__ENST00000370587.5_1_1:85491576-85491813:-|nuORF	REV__ENSG00000055732|ENST00000370589|MCOLN3	MSMS	A375_MHC_IP_R2	2	510.1689147949219	2	510.272021	1018.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.866	1	24.496	23.996	24.996	0.63014								0	0	0	0.1535	1	7746	7746		15.847	0	1		+		40138	16416;24033	29530	29765	39074	39074					0.020965448553852184
QDSYFQEDPL	10	Unmodified	_QDSYFQEDPL_					0	0	0		CDK19|p.P333S|1|0.43|ENSG00000155111|chr6:110622849-110622849|G/A|missense_variant	CDK19|p.P333S|1|0.43|ENSG00000155111|chr6:110622849-110622849|G/A|missense_variant	CDK19|p.P333S|1|0.43|ENSG00000155111|chr6:110622849-110622849|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	622.1715087890625	2	621.269675	1240.5248	-0.56057	-0.00034826	0.49328	0.00030646	-0.067286	-4.1803E-05	621.2698711689102	37.905	0.66454	37.905	37.454	38.118	0					23	12	3	0	0	0	0.27246	1	12793	12793		41.84	14.211	1	5586600			40139	352	29531	29766	39075	39075					-0.08584384078039875
QDSYFQEDPL	10	Unmodified	_QDSYFQEDPL_					0	0	0		CDK19|p.P333S|1|0.43|ENSG00000155111|chr6:110622849-110622849|G/A|missense_variant	CDK19|p.P333S|1|0.43|ENSG00000155111|chr6:110622849-110622849|G/A|missense_variant	CDK19|p.P333S|1|0.43|ENSG00000155111|chr6:110622849-110622849|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	621.269675	1240.5248	-0.56057	-0.00034826	0.49328	0.00030646	-0.067286	-4.1803E-05	621.2698711689102	37.905	0.66454	37.905	37.454	38.118	0	-0.018696	-0.00013131	NaN	41.84	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5586600			40140	352	29531	29766							-0.08584384078039875
QDSYFQEDPL	10	Unmodified	_QDSYFQEDPL_					0	0	0		CDK19|p.P333S|1|0.43|ENSG00000155111|chr6:110622849-110622849|G/A|missense_variant	CDK19|p.P333S|1|0.43|ENSG00000155111|chr6:110622849-110622849|G/A|missense_variant	CDK19|p.P333S|1|0.43|ENSG00000155111|chr6:110622849-110622849|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	621.269675	1240.5248	-1.3145	-0.00081665	0.72766	0.00045208	-0.58682	-0.00036457	621.2699794287113	37.171	0.4553	37.942	37.665	38.12	0.7709	0.018696	0.00015992	NaN	41.84	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5821600			40141	352	29531	29766							-0.08584384078039875
QDTDWKELYRK	11	Unmodified	_QDTDWKELYRK_					0	0	0		nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENSG00000100225|ENST00000266087|FBXO7;ENST00000492535.1_1_22:32889009-32894514:+|nuORF	nc|ENSG00000100225|Q9Y3I1-3|FBXO7	nc|ENSG00000100225|Q9Y3I1-3|FBXO7	MULTI-MSMS	A375_MHC_IP_R1	1	494.9839172363281	3	494.584291	1480.73104	-0.28277	-0.00013985	-0.11057	-5.4686E-05	-0.39333	-0.00019454	494.5841985132461	35.081	0.50861	35.081	34.81	35.319	0					25	9	3	0	0	0	0.7362	1	11625	11625		1.2148	0	1	10012000			40142	2138	29532	29767	39076	39076					0.009906088210755115
QDTITMIQ	8	Unmodified	_QDTITMIQ_					0	0	0			REV__ENST00000497091.1_1_9:128509732-128559720:+|nuORF	REV__ENST00000497091.1_1_9:128509732-128559720:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	948.8619995117188	1	949.465909	948.458632	0.21565	0.00020475	-0.72501	-0.00068837	-0.50936	-0.00048362	949.4649087562876	70.31	0.45999	70.31	70.034	70.494	0					15	8	2	0	0	0	0.972	1	25597	25597		7.9102	0	1	1910400	+		40143	20730	29533	29768	39077	39077					-0.017658714537901687
QDTITMIQ	8	Unmodified	_QDTITMIQ_					0	0	0			REV__ENST00000497091.1_1_9:128509732-128559720:+|nuORF	REV__ENST00000497091.1_1_9:128509732-128559720:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	949.465909	948.458632	-0.079499	-7.5482E-05	-1.359	-0.0012903	-1.4385	-0.0013658	949.4645508807868	69.436	0.66055	70.171	69.931	70.591	0.73421	-0.069572	-0.00017589	NaN	7.9102	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2397300	+		40144	20730	29533	29768							-0.017658714537901687
QDTLERYPD	9	Unmodified	_QDTLERYPD_					0	0	0		ENSG00000184408|ENST00000331113|KCND2	ENSG00000184408|ENST00000331113|KCND2	ENSG00000184408|ENST00000331113|KCND2	MULTI-SECPEP	A375_MHC_IP_R1	1	379.9486083984375	3	379.512132	1135.51457	0.22214	8.4306E-05	-1.1361	-0.00043118	-0.914	-0.00034687	379.511437324652	19.562	0.58887	19.562	19.238	19.827	0					15	11	2	0	0	0	0.73926	1	4719	4719		8.9762	3.5735	1	1092700			40145	8582	29534	29769	39078	39078					-0.047769470126240776
QDTMEPSQHV	10	Unmodified	_QDTMEPSQHV_					0	0	0		CSF3R|p.G513E|1|0.25|ENSG00000119535|chr1:36469194-36469194|C/T|missense_variant	CSF3R|p.G513E|1|0.25|ENSG00000119535|chr1:36469194-36469194|C/T|missense_variant	CSF3R|p.G513E|1|0.25|ENSG00000119535|chr1:36469194-36469194|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	586.1875	2	586.256045	1170.49754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.18	1	111.18	110.68	111.68	0								0	0	0	0.14741	1	40760	40760		22.736	0	1				40146	670	29535	29770	39079	39079					-0.08089190890086684
QDTPRLGFF	9	Unmodified	_QDTPRLGFF_					0	0	0		ENST00000375114.7_1_20:32667742-32668009:+|nuORF	ENST00000375114.7_1_20:32667742-32668009:+|nuORF	ENST00000375114.7_1_20:32667742-32668009:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	361.25372314453125	3	360.853941	1079.53999	-0.01465	-5.2863E-06	-0.13416	-4.8413E-05	-0.14881	-5.3699E-05	360.85390445289846	46.943	0.61555	46.943	46.647	47.263	0					17	11	2	0	0	0	0.60982	1	16504	16504		14.405	3.6059	1	2237900			40147	11265	29536	29771	39080	39080					0.003405723004561878
QDTRGTGPFY	10	Unmodified	_QDTRGTGPFY_					0	0	0			REV__nc|ENSG00000156500|Q6P4D5-3|PABIR3	REV__nc|ENSG00000156500|Q6P4D5-3|PABIR3	MULTI-MSMS	A375_MHC_IP_R1	1	572.1718139648438	2	571.26727	1140.51999	-0.28313	-0.00016174	-1.5594	-0.00089086	-1.8426	-0.0010526	571.2633486643198	31.424	1.3708	31.424	30.653	32.024	0					78	26	4	0	0	0	0.6502	1	9884	9884		17.113	1.2657	1	19956000	+		40148	27306	29537	29772	39081	39081					-0.04465223430133847
QDTRTSYRIGD	11	Unmodified	_QDTRTSYRIGD_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-16|FN1;nc|ENSG00000115414|P02751-2|FN1;FN1|p.S1621Rfs*10|1|0.25|ENSG00000115414|chr2:215382240-215382241|-/CT|frameshift_variant	ENSG00000115414|ENST00000354785|FN1;FN1|p.S1621Rfs*10|1|0.25|ENSG00000115414|chr2:215382240-215382241|-/CT|frameshift_variant	FN1|p.S1621Rfs*10|1|0.25|ENSG00000115414|chr2:215382240-215382241|-/CT|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	656.7174682617188	2	656.318022	1310.62149	-0.22369	-0.00014681	-0.37805	-0.00024812	-0.60174	-0.00039493	656.3180422187576	71.96	0.40425	71.96	71.765	72.169	0					11	7	2	0	0	0	0.72649	1	26192	26192		12.241	0	1	1525300			40149	3305;14009	29538	29773	39082	39082					-0.02139396798247617
QDTVLLYLHS	10	Unmodified	_QDTVLLYLHS_					0	0	0			REV__nc|ENSG00000143409|Q8N5J2-4|MINDY1	REV__nc|ENSG00000143409|Q8N5J2-4|MINDY1	MULTI-SECPEP	A375_MHC_IP_R2	2	397.28009033203125	3	396.880156	1187.61864	-0.42063	-0.00016694	0.048686	1.9323E-05	-0.37194	-0.00014762	396.8801430783962	19.964	0.81171	20.575	20.095	20.907	0.61029					46	15	4	0	0	0	0.91556	1	6125	6125		5.7834	0.38072	1	10788000	+		40150	19355	29539	29774	39083	39083					0.03233379814901127
QDVENAGSF	9	Unmodified	_QDVENAGSF_					0	0	0			REV__ENSG00000157540|ENST00000647188|DYRK1A	REV__ENSG00000157540|ENST00000647188|DYRK1A	MULTI-MSMS	A375_MHC_IP_R2	2	484.111328125	2	483.711796	965.40904	-0.68246	-0.00033011	-0.35989	-0.00017409	-1.0424	-0.0005042	483.7116860928972	45.121	0.81537	45.889	45.389	46.204	0.76799					25	15	2	0	0	0	0.17338	1	16849	16849		39.95	5.8473	1	1937900	+		40151	20034	29540	29775	39084	39084					-0.07504863138228757
QDVIKTFRY	9	Unmodified	_QDVIKTFRY_					0	0	0		ALDH1A2|p.G142D|1|0.29|ENSG00000128918|chr15:58010717-58010717|C/T|missense_variant	ALDH1A2|p.G142D|1|0.29|ENSG00000128918|chr15:58010717-58010717|C/T|missense_variant	ALDH1A2|p.G142D|1|0.29|ENSG00000128918|chr15:58010717-58010717|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	585.1907958984375	2	585.319306	1168.62406	-0.32266	-0.00018886	-2.274	-0.001331	-2.5967	-0.0015199	585.3197883772989	76.433	0.55523	76.433	76.168	76.724	0					19	10	3	0	0	0	0.75842	1	27958	27958		8.7454	0	1	1683400			40152	99	29541	29776	39085	39085					0.04649103397377985
QDVPILDVT	9	Unmodified	_QDVPILDVT_					0	0	0			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MULTI-MSMS	A375_MHC_IP_R2	2	500.7527770996094	2	500.27149	998.528426	-0.60673	-0.00030353	1.2252	0.00061292	0.61845	0.00030939	500.27155656733134	80.472	0.96511	81.216	80.759	81.724	0.74473					34	18	4	0	0	0	0.64808	1	30411	30411		11.64	0	1	3322200	+		40153	18629	29542	29777	39086	39086					0.029103304864861457
QDVQQATIP	9	Unmodified	_QDVQQATIP_					0	0	0			REV__ENSG00000138621|ENST00000342932|PPCDC	REV__ENSG00000138621|ENST00000342932|PPCDC	MSMS	A375_MHC_IP_R1	1	500.2029113769531	2	500.258914	998.503274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.41	1	48.41	47.91	48.91	0								0	0	0	0.14851	1	17077	17077		24.021	0	1		+		40154	19103	29543	29778	39087	39087					0.003962756839086978
QDVQQATIP	9	Unmodified	_QDVQQATIP_					0	0	0			REV__ENSG00000138621|ENST00000342932|PPCDC	REV__ENSG00000138621|ENST00000342932|PPCDC	MSMS	A375_MHC_IP_R2	2	500.2030334472656	2	500.258914	998.503274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.504	1	48.265	47.765	48.765	0.76128								0	0	0	0.14851	1	17813	17813		24.021	2.2739	1		+		40155	19103	29543	29778	39088	39088					0.003962756839086978
QDVSRESDATR	11	Unmodified	_QDVSRESDATR_					0	0	0		ENSG00000131697|ENST00000378156|NPHP4;ENST00000470763.1_1_1:5936963-5940792:-|nuORF	ENSG00000131697|ENST00000378156|NPHP4	ENSG00000131697|ENST00000378156|NPHP4	MULTI-MSMS	A375_MHC_IP_R1	1	631.690673828125	2	632.29983	1262.58511	-0.70325	-0.00044466	-0.80489	-0.00050893	-1.5081	-0.00095359	632.2992551467603	46.278	1.5756	46.278	45.992	47.567	0					52	30	2	0	0	0	0.72801	1	16259	16259		10.8	1.4164	1	4434700			40156	4342	29544	29779	39089	39089					-0.03568273694963864
QDVTEDQLS	9	Unmodified	_QDVTEDQLS_					0	0	0		ENST00000481482.5_1_7:138818528-138853308:+|nuORF;nc|ENSG00000105948|A0AVF1-2|IFT56;nc|ENSG00000105948|A0AVF1-3|IFT56;ENSG00000105948|ENST00000464848|TTC26	ENST00000481482.5_1_7:138818528-138853308:+|nuORF	ENST00000481482.5_1_7:138818528-138853308:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1636352539062	2	517.735468	1033.45638	-1.0677	-0.00055279	1.1504	0.00059558	0.082659	4.2796E-05	518.2373981167797	60.052	0.30223	60.799	60.603	60.906	0.74714					8	5	2	0	0	0	0.69381	1	22679	22679		20.415	1.1575	1	818730			40157	2651	29545	29780	39090	39090					-0.0590062865787786
QDVVVSEQIQ	10	Unmodified	_QDVVVSEQIQ_					0	0	0			REV__ENSG00000083290|ENST00000395544|ULK2	REV__ENSG00000083290|ENST00000395544|ULK2	MULTI-SECPEP	A375_MHC_IP_R2	2	572.171875	2	572.79586	1143.57717	-0.27626	-0.00015824	-0.11583	-6.6349E-05	-0.39209	-0.00022459	572.7961479311934	30.624	0.40266	31.342	31.165	31.567	0.71857					11	7	2	0	0	0	0.83447	1	10807	10807		23.79	6.6769	1	1824000	+		40158	16802	29546	29781	39091	39091					0.011121990555693628
QDVYTRKIVK	10	Unmodified	_QDVYTRKIVK_					0	0	0			REV__tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	REV__tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	MSMS	A375_MHC_IP_R1	1	625.396728515625	2	625.366787	1248.71902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.101	1	94.101	93.601	94.601	0								0	0	0	0.15465	1	34587	34587		5.7319	0.83484	1		+		40159	28777	29547	29782	39092	39092					0.10461036868559859
QDWPETSV	8	Unmodified	_QDWPETSV_					0	0	0			REV__ENST00000330753.5_1_14:85996623-86087491:+|nuORF	REV__ENST00000330753.5_1_14:85996623-86087491:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	481.6588439941406	2	481.216714	960.418876	-0.39589	-0.00019051	-0.047349	-2.2785E-05	-0.44324	-0.0002133	481.21675395148816	31.895	0.30618	31.895	31.769	32.075	0					8	5	2	0	0	0	0.972	1	10226	10226		4.756	2.6963	1	1901300	+		40160	23625	29548	29783	39093	39093					-0.0629167513285438
QDYCSSNNCC	10	Unmodified	_QDYCSSNNCC_					0	0	0			REV__ENST00000352251.7_2_13:39587562-39587667:-|nuORF	REV__ENST00000352251.7_2_13:39587562-39587667:-|nuORF	MSMS	A375_MHC_IP_R1	1	568.6421508789062	2	568.675716	1135.33688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.296	1	97.296	96.796	97.796	0								0	0	0	0.15531	1	35748	35748		3.5965	2.8029	1		+		40161	23799	29549	29784	39094	39094					-0.22537604870126415
QDYDEDWQY	9	Unmodified	_QDYDEDWQY_					0	0	0			REV__ENSG00000127083|ENST00000375550|OMD	REV__ENSG00000127083|ENST00000375550|OMD	MULTI-SECPEP	A375_MHC_IP_R2	2	631.4682006835938	2	631.235832	1260.45711	-0.89104	-0.00056246	1.1515	0.00072689	0.2605	0.00016444	631.2353438463027	55.387	0.30344	56.138	56.034	56.337	0.75075					11	5	3	0	0	0	0.53748	1	20958	20958		8.7454	3.4485	1	1055200	+		40162	18411	29550	29785	39095	39095					-0.16269834008858197
QDYDERARLPP	11	Unmodified	_QDYDERARLPP_					0	0	0			REV__ENSG00000163637|ENST00000638394|PRICKLE2	REV__ENSG00000163637|ENST00000638394|PRICKLE2	MSMS	A375_MHC_IP_R1	1	680.3046264648438	2	680.336215	1358.65788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.74	1	107.74	107.24	108.24	0								0	0	0	0.16265	1	39529	39529		4.897	0.36815	1		+		40163	20393	29551	29786	39096	39096					-0.007105199015313701
QDYFKWKA	8	Unmodified	_QDYFKWKA_					0	0	0		ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	MULTI-SECPEP	A375_MHC_IP_R1	1	542.6513671875	2	543.274367	1084.53418	-0.40455	-0.00021978	-2.0363	-0.0011063	-2.4409	-0.0013261	543.2730426719869	37.479	0.40937	37.479	37.249	37.658	0					16	7	3	0	0	0	0.97021	1	12562	12562		3.5965	0	1	2604600			40164	4549	29552	29787	39097	39097					-0.004705262112111086
QDYFPRRSY	9	Unmodified	_QDYFPRRSY_					0	0	0		ENST00000479868.6_1_3:10342767-10342902:-|nuORF	ENST00000479868.6_1_3:10342767-10342902:-|nuORF	ENST00000479868.6_1_3:10342767-10342902:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	411.1319274902344	3	411.2	1230.57817	0.26841	0.00011037	-0.36736	-0.00015106	-0.098952	-4.0689E-05	411.199837004732	35.479	0.40772	35.479	35.269	35.676	0					12	7	2	0	0	0	0.69674	1	11847	11847		4.5289	1.2092	1	1058100			40165	12484	29553	29788	39098	39098					-0.027895417848640136
QDYGNTTVW	9	Unmodified	_QDYGNTTVW_					0	0	0			REV__nc|ENSG00000253649|A0A1B0GVH4|PRSS51	REV__nc|ENSG00000253649|A0A1B0GVH4|PRSS51	MULTI-SECPEP	A375_MHC_IP_R2	2	541.650390625	2	542.240721	1082.46689	-1.1105	-0.00060216	-0.49936	-0.00027077	-1.6099	-0.00087293	542.2402941245855	71.757	0.65736	72.491	72.314	72.971	0.73421					21	12	2	0	0	0	0.74412	1	27178	27178		14.838	1.7958	1	4376000	+		40166	22856	29554	29789	39099	39099					-0.07104601212813577
QDYIYWTDW	9	Unmodified	_QDYIYWTDW_					0	0	0		ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MSMS	A375_MHC_IP_R2	2	645.2167358398438	2	645.277303	1288.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.97	1	106.73	106.23	107.23	0.75977								0	0	0	0.15486	1	40065	40065		11.64	1.5664	1				40167	1486	29555	29790	39100	39100					-0.09267472490182627
QDYTLPLQY	9	Unmodified	_QDYTLPLQY_					0	0	0			REV__THSD4|p.H249Y|1|0.2|ENSG00000187720|chr15:71242929-71242929|C/T|missense_variant	REV__THSD4|p.H249Y|1|0.2|ENSG00000187720|chr15:71242929-71242929|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	570.6953125	2	570.782222	1139.54989	-0.11083	-6.3259E-05	-4.2438	-0.0024223	-4.3546	-0.0024855	571.2794715151309	78.599	0.25219	78.599	78.454	78.707	0					6	4	2	0	0	0	0.73363	1	28654	28654		10.824	0	1	987590	+		40168	28106	29556	29791	39101	39101					-0.01430284484808908
QDYYSDYAY	9	Unmodified	_QDYYSDYAY_					0	0	0		nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598;ENST00000565396.5_1_16:2050390-2052694:-|nuORF	nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598	nc|ENSG00000167962|Q86UK7-2|ZNF598	MSMS	A375_MHC_IP_R2	2	594.2321166992188	2	594.230019	1186.44548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.822	1	84.561	84.061	85.061	0.73962								0	0	0	0.15486	1	31862	31862		4.3292	1.334	1				40169	14751;7239	29557	29792	39102	39102					-0.14028031032194122
QEAALCRQL	9	Carbamidomethyl (C)	_QEAALC(Carbamidomethyl (C))RQL_	QEAALC(1)RQL		QEAALC(100)RQL		0	1	0		ENSG00000018408|ENST00000360632|WWTR1;ENST00000485244.1_1_3:149243755-149260220:-|nuORF	ENSG00000018408|ENST00000360632|WWTR1;ENST00000485244.1_1_3:149243755-149260220:-|nuORF	ENSG00000018408|ENST00000360632|WWTR1	MULTI-SECPEP	A375_MHC_IP_R2	2	545.1787719726562	2	544.77949	1087.54443	-1.011	-0.00055078	-1.3101	-0.00071369	-2.3211	-0.0012645	544.779241731814	34.894	0.45451	35.657	35.324	35.778	0.76338					17	8	5	0	0	0	0.022401	1	12631	12631		99.755	22.93	1	2669300			40170	1046;12573	29558	29793	39103	39103	1				0.00415713451729971
QEAALCRQL	9	Carbamidomethyl (C)	_QEAALC(Carbamidomethyl (C))RQL_					0	1	0		ENSG00000018408|ENST00000360632|WWTR1;ENST00000485244.1_1_3:149243755-149260220:-|nuORF	ENSG00000018408|ENST00000360632|WWTR1;ENST00000485244.1_1_3:149243755-149260220:-|nuORF	ENSG00000018408|ENST00000360632|WWTR1	MULTI-MATCH	A375_MHC_IP_R1	1		2	544.77949	1087.54443	-0.34312	-0.00018692	-0.84751	-0.0004617	-1.1906	-0.00064863	544.7791043313641	35.651	0.40902	35.651	35.421	35.83	0	-0.003046	0.00014758	NaN	99.755	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2719300			40171	1046;12573	29558	29793			1				0.00415713451729971
QEAAPEKSSF	10	Unmodified	_QEAAPEKSSF_					0	0	0		ENSG00000168795|ENST00000307750|ZBTB5	ENSG00000168795|ENST00000307750|ZBTB5	ENSG00000168795|ENST00000307750|ZBTB5	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6611328125	2	547.261653	1092.50875	-0.65969	-0.00036102	-0.081108	-4.4387E-05	-0.7408	-0.00040541	547.2615417902862	24.523	0.45494	24.523	24.397	24.852	0					11	8	2	0	0	0	0.39465	1	6995	6995		57.108	11.368	1	5563900			40172	7343	29559	29794	39104	39104					-0.03380045524295383
QEAAPEKSSF	10	Unmodified	_QEAAPEKSSF_					0	0	0		ENSG00000168795|ENST00000307750|ZBTB5	ENSG00000168795|ENST00000307750|ZBTB5	ENSG00000168795|ENST00000307750|ZBTB5	MULTI-SECPEP	A375_MHC_IP_R2	2	546.68212890625	2	547.261653	1092.50875	-1.0359	-0.0005669	0.24693	0.00013514	-0.78895	-0.00043176	547.2617269178568	23.911	0.307	24.542	24.384	24.691	0.63014					8	5	2	0	0	0	0.31583	1	7791	7791		53.317	21.279	1	3506800			40173	7343	29559	29794	39105	39105					-0.03380045524295383
QEAASLLGKKY	11	Unmodified	_QEAASLLGKKY_					0	0	0		nc|ENSG00000132780|P49321-2|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000464190.6_1_1:46049764-46072280:+|nuORF;ENST00000534101.1_1_1:46049764-46072228:+|nuORF	nc|ENSG00000132780|P49321-2|NASP	nc|ENSG00000132780|P49321-2|NASP	MULTI-MSMS	A375_MHC_IP_R1	1	403.6275939941406	3	403.227556	1206.66084	-0.38681	-0.00015597	0.29434	0.00011869	-0.092467	-3.7285E-05	403.227690523947	33.976	0.70593	33.976	33.547	34.253	0					37	13	4	0	0	0	0.0013316	2	11105	11095;11105		100.07	77.291	1	23750000			40174	4447	29560	29795	39106;39107	39107					0.06577355223294035
QEAASLLGKKY	11	Unmodified	_QEAASLLGKKY_					0	0	0		nc|ENSG00000132780|P49321-2|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000464190.6_1_1:46049764-46072280:+|nuORF;ENST00000534101.1_1_1:46049764-46072228:+|nuORF	nc|ENSG00000132780|P49321-2|NASP	nc|ENSG00000132780|P49321-2|NASP	MULTI-MSMS	A375_MHC_IP_R2	2	403.6271057128906	3	403.227556	1206.66084	-0.13522	-5.4524E-05	-0.18497	-7.4585E-05	-0.32019	-0.00012911	403.22744568606385	33.064	0.5103	33.816	33.584	34.095	0.75225					31	9	4	0	0	0	0.00062508	1	11815	11815		108.77	85.994	1	24127000			40175	4447	29560	29795	39108	39108					0.06577355223294035
QEACLRFMVV	10	Unmodified	_QEACLRFMVV_					0	0	0		ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	MULTI-MSMS	A375_MHC_IP_R1	1	399.6033630371094	3	399.203588	1194.58893	-0.44208	-0.00017648	-0.62092	-0.00024787	-1.063	-0.00042435	399.203319042239	41.783	0.51196	41.783	41.47	41.982	0					15	9	2	0	0	0	0.71693	1	14491	14491		4.7159	0.52642	1	1486800			40176	1872	29561	29796	39109	39109					-0.0005759872644830466
QEADIQNSKF	10	Unmodified	_QEADIQNSKF_					0	0	0		nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1;nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-3|GOLGB1	nc|ENSG00000173230|Q14789-3|GOLGB1	MULTI-SECPEP	A375_MHC_IP_R1	1	590.6848754882812	2	590.28566	1178.55677	-0.44599	-0.00026326	0.059596	3.5179E-05	-0.38639	-0.00022808	590.2856188011807	32.271	0.35904	32.271	32.024	32.383	0					10	6	2	0	0	0	0.67187	1	10442	10442		39.213	36.218	1	2701400			40177	7780	29562	29797	39110	39110					-0.025369716042632717
QEADIQNSKF	10	Unmodified	_QEADIQNSKF_					0	0	0		nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1;nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-3|GOLGB1	nc|ENSG00000173230|Q14789-3|GOLGB1	MULTI-SECPEP	A375_MHC_IP_R2	2	590.68505859375	2	590.28566	1178.55677	-0.589	-0.00034768	0.63926	0.00037734	0.050254	2.9664E-05	590.2858565445687	31.588	0.46021	32.325	32.044	32.504	0.73692					12	8	2	0	0	0	0.27573	1	11199	11199		77.049	47.208	1	2638300			40178	7780	29562	29797	39111	39111					-0.025369716042632717
QEAEGDTHPL	10	Unmodified	_QEAEGDTHPL_					0	0	0			REV__ENST00000486455.5_3_3:58190569-58193974:-|nuORF	REV__ENST00000486455.5_3_3:58190569-58193974:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	549.1483154296875	2	548.74891	1095.48327	-1.2187	-0.00066876	0.30416	0.00016691	-0.91453	-0.00050185	548.749116250328	52.523	0.65741	53.275	52.932	53.59	0.75225					27	12	3	0	0	0	0.62155	1	19779	19779		19.257	2.1441	1	3740700	+		40179	25002	29563	29798	39112	39112					-0.06065520046695383
QEAELFRKI	9	Unmodified	_QEAELFRKI_					0	0	0		nc|ENSG00000156050|Q96MY7-2|FAM161B;ENSG00000156050|ENST00000286544|FAM161B	nc|ENSG00000156050|Q96MY7-2|FAM161B	nc|ENSG00000156050|Q96MY7-2|FAM161B	MULTI-MSMS	A375_MHC_IP_R1	1	378.9486083984375	3	378.548629	1132.62406	0.26777	0.00010136	0.036756	1.3914E-05	0.30452	0.00011528	378.5485112018183	46.537	0.4539	46.537	46.295	46.749	0					17	8	3	0	0	0	0.37338	1	16362	16362		26.021	7.6476	1	4141400			40180	6171	29564	29799	39113	39113					0.06305103397380662
QEAELFRKI	9	Unmodified	_QEAELFRKI_					0	0	0		nc|ENSG00000156050|Q96MY7-2|FAM161B;ENSG00000156050|ENST00000286544|FAM161B	nc|ENSG00000156050|Q96MY7-2|FAM161B	nc|ENSG00000156050|Q96MY7-2|FAM161B	MULTI-SECPEP	A375_MHC_IP_R2	2	378.9487609863281	3	378.548629	1132.62406	0.098301	3.7212E-05	-0.17071	-6.4621E-05	-0.072406	-2.7409E-05	378.548605392168	45.579	0.50446	46.344	46.048	46.552	0.76519					20	9	3	0	0	0	0.49205	1	17050	17050		26.021	8.5781	1	3675100			40181	6171	29564	29799	39114	39114					0.06305103397380662
QEAEQLFL	8	Unmodified	_QEAEQLFL_					0	0	0		ENSG00000204351|ENST00000375394|SKIC2;ENST00000465703.5_1_6:31926942-31928873:+|nuORF;ENST00000488648.5_1_6:31926942-31929152:+|nuORF	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MULTI-SECPEP	A375_MHC_IP_R1	1	489.650146484375	2	489.250557	976.486562	-0.36528	-0.00017872	0.028535	1.3961E-05	-0.33675	-0.00016475	489.2504565214188	76.521	0.71087	76.521	76.219	76.93	0					26	13	3	0	0	0	0.85715	1	27895	27895		29.082	5.9332	1	2462000			40182	9433	29565	29800	39115	39115					-0.002622252020501037
QEAFFNKDY	9	Unmodified	_QEAFFNKDY_					0	0	0		DOCK3|p.D1565N|1|0.24|ENSG00000088538|chr3:51357767-51357767|G/A|missense_variant	DOCK3|p.D1565N|1|0.24|ENSG00000088538|chr3:51357767-51357767|G/A|missense_variant	DOCK3|p.D1565N|1|0.24|ENSG00000088538|chr3:51357767-51357767|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	581.1845703125	2	581.264196	1160.51384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.203	1	67.203	66.703	67.703	0								0	0	0	0.107	1	24350	24350		39.957	24.11	1				40183	783	29566	29801	39116	39116					-0.05999741661662483
QEAFFNKDY	9	Unmodified	_QEAFFNKDY_					0	0	0		DOCK3|p.D1565N|1|0.24|ENSG00000088538|chr3:51357767-51357767|G/A|missense_variant	DOCK3|p.D1565N|1|0.24|ENSG00000088538|chr3:51357767-51357767|G/A|missense_variant	DOCK3|p.D1565N|1|0.24|ENSG00000088538|chr3:51357767-51357767|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	581.184814453125	2	581.264196	1160.51384	-0.5001	-0.00029069	-1.8568	-0.0010793	-2.3569	-0.00137	581.2630189851463	66.281	0.71479	67.018	66.575	67.29	0.73631					17	13	2	0	0	0	0.11296	1	25178	25178		48.346	26.599	1	778200			40184	783	29566	29801	39117	39117					-0.05999741661662483
QEAFFVKEY	9	Unmodified	_QEAFFVKEY_					0	0	0		nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0|DOCK4	nc|ENSG00000128512|Q8N1I0|DOCK4	MULTI-SECPEP	A375_MHC_IP_R1	1	581.1845703125	2	580.784764	1159.55498	-0.51719	-0.00030037	0.38517	0.0002237	-0.13202	-7.6676E-05	580.7850121540403	67.235	0.71625	67.235	66.887	67.603	0					24	13	3	0	0	0	0.16595	1	24350	24350		53.404	31.867	1	4026300			40185	4139	29567	29802	39118	39118					-0.018419806221800172
QEAFFVKEY	9	Unmodified	_QEAFFVKEY_					0	0	0		nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0|DOCK4	nc|ENSG00000128512|Q8N1I0|DOCK4	MULTI-SECPEP	A375_MHC_IP_R2	2	581.184814453125	2	580.784764	1159.55498	-0.44162	-0.00025649	-0.50107	-0.00029102	-0.94269	-0.0005475	580.7847929067707	66.526	0.66396	67.262	66.882	67.546	0.73631					28	12	3	0	0	0	0.69179	1	25178	25178		21.59	9.3495	1	3049100			40186	4139	29567	29802	39119	39119					-0.018419806221800172
QEAGIKTAF	9	Unmodified	_QEAGIKTAF_					0	0	0		ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-SECPEP	A375_MHC_IP_R1	1	483.1582336425781	2	482.758549	963.502546	-0.58855	-0.00028413	-0.089819	-4.3361E-05	-0.67836	-0.00032749	482.7584836968223	41.189	1.069	41.189	40.913	41.982	0					57	20	3	0	0	0	0.011066	1	14161	14161		125.53	40.257	1	97010000			40187	4120	29568	29803	39120	39120					0.01933481034848228
QEAIPIDENS	10	Unmodified	_QEAIPIDENS_					0	0	0			REV__ENST00000572085.5_1_15:43707600-43785241:-|nuORF	REV__ENST00000572085.5_1_15:43707600-43785241:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	558.0383911132812	2	558.264393	1114.51423	-0.60043	-0.0003352	3.1284	0.0017465	2.528	0.0014113	558.7669331614833	84.778	0.35712	85.514	85.372	85.729	0.73601					10	6	2	0	0	0	0.8125	1	32193	32193		8.7454	5.1489	1	852960	+		40188	16532	29569	29804	39121	39121					-0.0384436673248274
QEAKREAETFK	11	Unmodified	_QEAKREAETFK_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-SECPEP	A375_MHC_IP_R1	1	446.9766845703125	3	446.233369	1335.67828	-0.063561	-2.8363E-05	-0.17347	-7.741E-05	-0.23703	-0.00010577	446.56786097260493	25.434	0.45783	25.434	25.053	25.511	0					12	8	2	0	0	0	0.99819	1	7354	7354		5.8681	4.7584	1	3067800			40189	7279	29570	29805	39122	39122					0.023866507582624763
QEALIRTVF	9	Unmodified	_QEALIRTVF_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-SECPEP	A375_MHC_IP_R1	1	539.2083129882812	2	538.808574	1075.60259	-0.60866	-0.00032795	-0.008748	-4.7135E-06	-0.6174	-0.00033266	538.8085991018347	81.727	0.60729	81.727	81.404	82.011	0					26	11	3	0	0	0	0.038931	1	29853	29853		90.135	46.277	1	9369800			40190	4710	29571	29806	39123	39123					0.06781718368665679
QEALNLFKSI	10	Unmodified	_QEALNLFKSI_					0	0	0		nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|P63092-3|GNAS	nc|ENSG00000087460|P63092-3|GNAS	MULTI-SECPEP	A375_MHC_IP_R2	2	581.3570556640625	2	581.826963	1161.63937	-0.37042	-0.00021552	-0.8496	-0.00049432	-1.22	-0.00070984	581.8262816626562	96.232	0.30495	96.982	96.906	97.211	0.75045					7	5	2	0	0	0	0.73795	1	36565	36565		15.739	2.866	1	1379600			40191	1873	29572	29807	39124	39124					0.06501970194585738
QEALPEKSL	9	Unmodified	_QEALPEKSL_					0	0	0		ENSG00000166046|ENST00000299045|TCP11L2;nc|ENSG00000166046|Q8N4U5-2|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	MULTI-SECPEP	A375_MHC_IP_R1	1	507.9800720214844	2	507.776939	1013.53933	-0.33258	-0.00016888	-0.45513	-0.0002311	-0.78771	-0.00039998	507.7765362250191	35.978	0.4576	35.978	35.778	36.236	0					16	8	3	0	0	0	0.23313	1	12018	12018		42.312	3.6977	1	1775500			40192	7020	29573	29808	39125	39125					0.033097328607595955
QEALSLMKGT	10	Unmodified	_QEALSLMKGT_					0	0	0			REV__ENSG00000103811|ENST00000220166|CTSH	REV__ENSG00000103811|ENST00000220166|CTSH	MULTI-SECPEP	A375_MHC_IP_R1	1	360.61322021484375	3	359.858475	1076.5536	0.075914	2.7318E-05	0.90504	0.00032569	0.98095	0.000353	359.85866358921527	40.195	0.20417	40.195	40.1	40.304	0					5	3	2	0	0	0	0.92227	1	13826	13826		5.0475	4.0339	1	867860	+		40193	17293	29574	29809	39126	39126					0.018380620174184514
QEAPALVRL	9	Unmodified	_QEAPALVRL_					0	0	0		ENSG00000254470|ENST00000532090|AP5B1;ENST00000316846.2_11:65545618-65547282:-|nuORF	ENSG00000254470|ENST00000532090|AP5B1	ENSG00000254470|ENST00000532090|AP5B1	MULTI-SECPEP	A375_MHC_IP_R1	1	499.1951904296875	2	498.795466	995.57638	-0.44308	-0.00022101	0.51581	0.00025728	0.07273	3.6277E-05	498.7954174524714	64.775	0.35729	64.775	64.597	64.954	0					11	6	2	0	0	0	0.11711	1	23453	23453		60.074	18.234	1	1147000			40194	9877	29575	29810	39127	39127					0.07841449197189831
QEAPALVRL	9	Unmodified	_QEAPALVRL_					0	0	0		ENSG00000254470|ENST00000532090|AP5B1;ENST00000316846.2_11:65545618-65547282:-|nuORF	ENSG00000254470|ENST00000532090|AP5B1	ENSG00000254470|ENST00000532090|AP5B1	MULTI-SECPEP	A375_MHC_IP_R2	2	498.1629638671875	2	498.795466	995.57638	-0.46438	-0.00023163	-0.25055	-0.00012497	-0.71493	-0.0003566	498.7952386600618	63.883	0.35454	64.623	64.394	64.749	0.74022					11	6	2	0	0	0	0.38578	1	24179	24179		21.537	6.6987	1	1139700			40195	9877	29575	29810	39128	39128					0.07841449197189831
QEAPDLFQW	9	Unmodified	_QEAPDLFQW_					0	0	0		nc|ENSG00000163703|Q96HD1-2|CRELD1;ENST00000465716.1_1_3:9976275-9979984:+|nuORF;ENSG00000163703|ENST00000452070|CRELD1	nc|ENSG00000163703|Q96HD1-2|CRELD1	nc|ENSG00000163703|Q96HD1-2|CRELD1	MULTI-MSMS	A375_MHC_IP_R1	1	567.66650390625	2	567.266739	1132.51892	0.033726	1.9131E-05	-1.0355	-0.00058741	-1.0018	-0.00056828	567.2661998220907	126.68	0.30471	126.68	126.56	126.86	0					8	5	2	0	0	0	0.32092	1	48451	48451		29.082	13.234	1	8790600			40196	14721	29576	29811	39129	39129					-0.04203437799060339
QEAPDLFQW	9	Unmodified	_QEAPDLFQW_					0	0	0		nc|ENSG00000163703|Q96HD1-2|CRELD1;ENST00000465716.1_1_3:9976275-9979984:+|nuORF;ENSG00000163703|ENST00000452070|CRELD1	nc|ENSG00000163703|Q96HD1-2|CRELD1	nc|ENSG00000163703|Q96HD1-2|CRELD1	MULTI-MSMS	A375_MHC_IP_R2	2	567.6670532226562	2	567.266739	1132.51892	-0.33052	-0.0001875	-0.04517	-2.5623E-05	-0.37569	-0.00021312	567.2667325482321	126.36	0.25233	126.66	126.48	126.73	0.2951					11	4	3	0	0	0	0.27064	1	49445	49445		32.786	10.049	1	8817300			40197	14721	29576	29811	39130	39130					-0.04203437799060339
QEAPFGPSGY	10	Unmodified	_QEAPFGPSGY_					0	0	0		ENSG00000168917|ENST00000446465|SLC35G2	ENSG00000168917|ENST00000446465|SLC35G2	ENSG00000168917|ENST00000446465|SLC35G2	MULTI-SECPEP	A375_MHC_IP_R1	1	527.137939453125	2	526.737814	1051.46108	-0.76907	-0.0004051	0.16608	8.7482E-05	-0.60299	-0.00031762	526.7379155208785	67.03	0.56277	67.03	66.734	67.297	0					21	10	3	0	0	0	0.02507	1	24293	24293		90.135	59.498	1	1826000			40198	7359	29577	29812	39131	39131					-0.06259699724455459
QEAPFGPSGY	10	Unmodified	_QEAPFGPSGY_					0	0	0		ENSG00000168917|ENST00000446465|SLC35G2	ENSG00000168917|ENST00000446465|SLC35G2	ENSG00000168917|ENST00000446465|SLC35G2	MULTI-MSMS	A375_MHC_IP_R2	2	527.1376342773438	2	526.737814	1051.46108	-0.59586	-0.00031386	0.29983	0.00015793	-0.29603	-0.00015593	526.7378866117793	66.427	0.51157	67.163	66.882	67.393	0.73631					15	9	2	0	0	0	0.14143	1	25198	25198		55.235	31.214	1	1688900			40199	7359	29577	29812	39132	39132					-0.06259699724455459
QEAPGKLSL	9	Unmodified	_QEAPGKLSL_					0	0	0		ENSG00000099821|ENST00000588649|POLRMT;ENST00000578759.1_1_17:60214444-60217453:-|nuORF	ENSG00000099821|ENST00000588649|POLRMT	ENSG00000099821|ENST00000588649|POLRMT	MULTI-SECPEP	A375_MHC_IP_R1	1	472.137939453125	2	471.766374	941.518196	-0.20794	-9.81E-05	0.42154	0.00019887	0.2136	0.00010077	471.76639852356993	43.171	0.45818	43.171	42.942	43.4	0					16	8	2	0	0	0	0.13208	1	15023	15023		41.956	1.9982	1	4048500			40200	2087	29578	29813	39133	39133					0.04509767551905952
QEAPNAECSE	10	Unmodified	_QEAPNAECSE_					0	0	0			REV__SYNE1|p.D6036N|1|0.44|ENSG00000131018|chr6:152284079-152284079|C/T|missense_variant	REV__SYNE1|p.D6036N|1|0.44|ENSG00000131018|chr6:152284079-152284079|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	539.2083129882812	2	539.211303	1076.40805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.683	1	81.683	81.183	82.183	0								0	0	0	0.14925	1	29853	29853		19.257	4.6753	1		+		40201	28071	29579	29814	39134	39134					-0.12709445569453237
QEAQAYADDNS	11	Unmodified	_QEAQAYADDNS_					0	0	0		nc|ENSG00000108774|P51148-2|RAB5C;ENSG00000108774|ENST00000346213|RAB5C;nc|ENSG00000111540|P61020-2|RAB5B	nc|ENSG00000108774|P51148-2|RAB5C	nc|ENSG00000108774|P51148-2|RAB5C	MULTI-SECPEP	A375_MHC_IP_R1	1	605.6544799804688	2	606.244189	1210.47382	-0.64006	-0.00038803	-0.75193	-0.00045585	-1.392	-0.00084389	606.2436039679642	41.628	0.71415	41.628	41.368	42.082	0					19	13	2	0	0	0	0.94168	1	14325	14325		10.8	10.8	1	2929400			40202	2833	29580	29815	39135	39135					-0.12299333122905409
QEAQECNASP	10	Unmodified	_QEAQECNASP_					0	0	0		nc|ENSG00000170162|Q8N8G2-2|VGLL2;ENSG00000170162|ENST00000326274|VGLL2	nc|ENSG00000170162|Q8N8G2-2|VGLL2	nc|ENSG00000170162|Q8N8G2-2|VGLL2	MULTI-SECPEP	A375_MHC_IP_R1	1	539.2083129882812	2	538.719295	1075.42404	-0.6367	-0.000343	0.34299	0.00018477	-0.29371	-0.00015823	538.7196047786024	81.592	0.65742	81.592	81.202	81.86	0					23	12	3	0	0	0	0.87163	1	29853	29853		19.257	0	1	2629300			40203	7478	29581	29816	39136	39136					-0.11065739332548219
QEAQECNASP	10	Unmodified	_QEAQECNASP_					0	0	0		nc|ENSG00000170162|Q8N8G2-2|VGLL2;ENSG00000170162|ENST00000326274|VGLL2	nc|ENSG00000170162|Q8N8G2-2|VGLL2	nc|ENSG00000170162|Q8N8G2-2|VGLL2	MULTI-MSMS	A375_MHC_IP_R2	2	539.2078857421875	2	538.719295	1075.42404	-0.95831	-0.00051626	0.80184	0.00043196	-0.15648	-8.4296E-05	538.7195911728336	81.079	0.76404	81.824	81.416	82.18	0.74473					29	14	3	0	0	0	0.59108	1	30663	30663		21.537	2.28	1	2643800			40204	7478	29581	29816	39137	39137					-0.11065739332548219
QEAQECNASP	10	Unmodified	_QEAQECNASP_					0	0	0		nc|ENSG00000170162|Q8N8G2-2|VGLL2;ENSG00000170162|ENST00000326274|VGLL2	nc|ENSG00000170162|Q8N8G2-2|VGLL2	nc|ENSG00000170162|Q8N8G2-2|VGLL2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	538.719295	1075.42404	-0.95831	-0.00051626	0.80184	0.00043196	-0.15648	-8.4296E-05	538.7195911728336	81.079	0.76404	81.824	81.416	82.18	0.74473	0.11574	0.00016942	NaN	21.537	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2643800			40205	7478	29581	29816							-0.11065739332548219
QEAQEFNIT	9	Unmodified	_QEAQEFNIT_					0	0	0		ENSG00000110060|ENST00000227474|PUS3	ENSG00000110060|ENST00000227474|PUS3	ENSG00000110060|ENST00000227474|PUS3	MSMS	A375_MHC_IP_R1	1	540.2158813476562	2	540.253828	1078.4931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.302	1	38.302	37.802	38.802	0								0	0	0	0.15142	1	12981	12981		19.257	0	1				40206	2914	29582	29817	39138	39138					-0.04300332041339061
QEAQLQLI	8	Unmodified	_QEAQLQLI_					0	0	0			REV__ENSG00000144821|ENST00000693548|MYH15	REV__ENSG00000144821|ENST00000693548|MYH15	MULTI-SECPEP	A375_MHC_IP_R2	2	472.16607666015625	2	471.766374	941.518196	-0.52031	-0.00024546	0.11293	5.3277E-05	-0.40738	-0.00019219	471.76637627263796	42.343	0.45906	43.115	42.91	43.369	0.7724					15	8	2	0	0	0	0.51146	1	15757	15757		36.127	3.8215	1	3508500	+		40207	19448	29583	29818	39139	39139					0.04509767551905952
QEARKKQRYRT	11	Unmodified	_QEARKKQRYRT_					0	0	0			REV__ENSG00000128272|ENST00000674920|ATF4	REV__ENSG00000128272|ENST00000674920|ATF4	MULTI-MSMS	A375_MHC_IP_R1	1	489.0107727050781	3	488.611174	1462.81169	-0.54037	-0.00026403	-0.4378	-0.00021391	-0.97817	-0.00047794	488.6107519061671	133.51	1.8301	133.51	132.95	134.78	0					111	35	5	0	0	0	0.73807	1	51459	51459		1.2148	0	1	46408000	+		40208	18445	29584	29819	39140	39140					0.09879934654622957
QEARKKQRYRT	11	Unmodified	_QEARKKQRYRT_					0	0	0			REV__ENSG00000128272|ENST00000674920|ATF4	REV__ENSG00000128272|ENST00000674920|ATF4	MULTI-MSMS	A375_MHC_IP_R2	2	489.0105285644531	3	488.611174	1462.81169	-0.49161	-0.0002402	-0.47543	-0.0002323	-0.96703	-0.0004725	488.61075956359434	133.42	2.5975	133.58	132.33	134.93	0.16487					115	50	4	0	0	0	0.73698	1	52446	52446		2.2527	1.0379	1	43018000	+		40209	18445	29584	29819	39141	39141					0.09879934654622957
QEATALLQ	8	Unmodified	_QEATALLQ_					0	0	0		ENST00000484979.5_1_13:58206389-58206503:+|nuORF	ENST00000484979.5_1_13:58206389-58206503:+|nuORF	ENST00000484979.5_1_13:58206389-58206503:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	437.6369934082031	2	437.23745	872.460347	-0.74296	-0.00032485	0.29276	0.00012801	-0.4502	-0.00019684	437.237520910963	25.662	1.2701	26.321	26.144	27.414	0.65992					53	24	3	0	0	0	0.42086	1	8849	8849		52.268	1.4133	1	71994000			40210	12568	29585	29820	39142	39142					0.019015056264720442
QEAWPRPG	8	Unmodified	_QEAWPRPG_					0	0	0			REV__ENSG00000160447|ENST00000291906|PKN3	REV__ENSG00000160447|ENST00000291906|PKN3	MSMS	A375_MHC_IP_R1	1	470.8001708984375	2	470.735409	939.456264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.965	1	24.965	24.465	25.465	0								0	0	0	0.16876	1	7195	7195		8.5933	0	1		+		40211	20171	29586	29821	39143	39143					-0.015885390765788543
QEAWTEGRRF	10	Unmodified	_QEAWTEGRRF_					0	0	0		ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-3|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4;ENST00000475582.5_1_2:27589580-27589796:-|nuORF	ENSG00000115211|ENST00000347454|EIF2B4	ENSG00000115211|ENST00000347454|EIF2B4	MULTI-MSMS	A375_MHC_IP_R1	1	427.6108703613281	3	427.210788	1278.61053	-0.19154	-8.1828E-05	0.28727	0.00012273	0.095734	4.0899E-05	427.2109671624423	34.307	0.40358	34.307	34.154	34.557	0					12	7	2	0	0	0	0.5004	1	11340	11340		28.181	28.181	1	3426600			40212	3281	29587	29822	39144	39144					-0.01762754381866216
QEAWTEGRRF	10	Unmodified	_QEAWTEGRRF_					0	0	0		ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-3|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4;ENST00000475582.5_1_2:27589580-27589796:-|nuORF	ENSG00000115211|ENST00000347454|EIF2B4	ENSG00000115211|ENST00000347454|EIF2B4	MULTI-MSMS	A375_MHC_IP_R2	2	427.6103210449219	3	427.210788	1278.61053	-0.67666	-0.00028908	0.050916	2.1752E-05	-0.62575	-0.00026733	427.2106702788287	33.582	0.45426	34.334	34.146	34.6	0.75225					15	8	3	0	0	0	0.46263	1	12074	12074		30.431	20.116	1	2812400			40213	3281	29587	29822	39145	39145					-0.01762754381866216
QEAYHVAQY	9	Unmodified	_QEAYHVAQY_					0	0	0			REV__KLHL1|p.H194Y|1|0.37|ENSG00000150361|chr13:69975720-69975720|G/A|missense_variant	REV__KLHL1|p.H194Y|1|0.37|ENSG00000150361|chr13:69975720-69975720|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	555.1968383789062	2	554.756538	1107.49852	-1.0749	-0.00059632	0.32373	0.00017959	-0.75119	-0.00041673	554.7565248484218	54.208	0.45754	54.959	54.66	55.118	0.75075					14	8	2	0	0	0	0.64808	1	20511	20511		11.64	11.64	1	2442600	+		40214	26857	29588	29823	39146	39146					-0.050926084588581944
QECFFNLA	8	Unmodified	_QECFFNLA_					0	0	0			REV__ENSG00000179698|ENST00000323662|WDR97	REV__ENSG00000179698|ENST00000323662|WDR97	MSMS	A375_MHC_IP_R2	2	486.1817321777344	2	486.218203	970.421853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.831	1	97.587	97.087	98.087	0.75586								0	0	0	0.16876	1	36758	36758		18.135	7.9516	1		+		40215	21576	29589	29824	39147	39147					-0.06454123279695523
QEDAEKYLGF	10	Unmodified	_QEDAEKYLGF_					0	0	0		USP10|p.E526K|1|0.24|ENSG00000103194|chr16:84763010-84763010|G/A|missense_variant	USP10|p.E526K|1|0.24|ENSG00000103194|chr16:84763010-84763010|G/A|missense_variant	USP10|p.E526K|1|0.24|ENSG00000103194|chr16:84763010-84763010|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	599.6800537109375	2	600.282586	1198.55062	0.098909	5.9373E-05	-0.83215	-0.00049952	-0.73324	-0.00044015	600.2815215569672	69.317	0.50914	69.317	69.02	69.529	0					20	9	3	0	0	0	0.87163	1	25059	25059		19.257	11.968	1	2409100			40216	30124	29590	29825	39148	39148					-0.04071489835769171
QEDAYKFPY	9	Unmodified	_QEDAYKFPY_					0	0	0			REV__DISP1|p.V1395Cfs*18|1|0.06|ENSG00000154309|chr1:223005576-223005577|-/T|frameshift_variant	REV__DISP1|p.V1395Cfs*18|1|0.06|ENSG00000154309|chr1:223005576-223005577|-/T|frameshift_variant	MSMS	A375_MHC_IP_R2	2	580.7173461914062	2	580.766571	1159.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.664	1	52.416	51.916	52.916	0.75225								0	0	0	0.15486	1	19448	19448		12.532	0.29089	1		+		40217	15993	29591	29826	39149	39149					-0.05478857518892255
QEDELVKIRKY	11	Unmodified	_QEDELVKIRKY_					0	0	0		nc|ENSG00000248905|Q68DA7-5|FMN1;chr15:33008075-33153048|430|22.15|0.56|5.32|-|ENST00000561249|FMN1,FMN1;ENSG00000248905|ENST00000616417|FMN1;ENST00000558628.1_1_15:33200689-33218453:-|nuORF	nc|ENSG00000248905|Q68DA7-5|FMN1	nc|ENSG00000248905|Q68DA7-5|FMN1	MULTI-SECPEP	A375_MHC_IP_R2	2	355.5794677734375	4	355.950321	1419.77218	-0.23708	-8.4389E-05	-0.26438	-9.4108E-05	-0.50147	-0.0001785	356.200921198112	31.584	0.25469	32.319	32.196	32.451	0.73527					11	4	3	0	0	0	0.99732	1	11208	11208		6.6235	4.1887	1	3274000			40218	437	29592	29827	39150	39150					0.07908369860547282
QEDELVKIRKY	11	Unmodified	_QEDELVKIRKY_					0	0	0		nc|ENSG00000248905|Q68DA7-5|FMN1;chr15:33008075-33153048|430|22.15|0.56|5.32|-|ENST00000561249|FMN1,FMN1;ENSG00000248905|ENST00000616417|FMN1;ENST00000558628.1_1_15:33200689-33218453:-|nuORF	nc|ENSG00000248905|Q68DA7-5|FMN1	nc|ENSG00000248905|Q68DA7-5|FMN1	MULTI-MATCH	A375_MHC_IP_R1	1		4	355.950321	1419.77218	-0.15354	-5.4654E-05	0.29998	0.00010678	0.14643	5.2123E-05	356.2011443602566	32.331	0.3052	32.331	32.179	32.485	0	0.0062007	0.00057487	NaN	6.6235	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2370300			40219	437	29592	29827							0.07908369860547282
QEDEVMRAY	9	Unmodified	_QEDEVMRAY_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3;ENST00000397300.2_1_11:93921617-93921950:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	MULTI-SECPEP	A375_MHC_IP_R2	2	570.1779174804688	2	570.753138	1139.49172	-0.44953	-0.00025657	-0.4848	-0.0002767	-0.93433	-0.00053327	570.7530929095846	35.933	0.30496	36.696	36.537	36.842	0.76338					8	5	2	0	0	0	0.38578	1	13062	13062		41.84	11.203	1	1252700			40220	2972	29593	29828	39151	39151					-0.07244289401751303
QEDHPIMSF	9	Oxidation (M)	_QEDHPIM(Oxidation (M))SF_		QEDHPIM(1)SF		QEDHPIM(82)SF	0	0	1		nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26;ENSG00000162923|ENST00000414423|WDR26;ENST00000486652.5_1_1:224577539-224589708:-|nuORF;ENST00000479727.1_1_1:224585697-224586694:-|nuORF	nc|ENSG00000162923|Q9H7D7-2|WDR26	nc|ENSG00000162923|Q9H7D7-2|WDR26	MULTI-MSMS	A375_MHC_IP_R1	1	560.693359375	2	560.242406	1118.47026	-0.21094	-0.00011818	-0.24381	-0.0001366	-0.45475	-0.00025477	560.2422981667511	39.062	0.91371	39.062	38.78	39.694	0					35	17	4	0	0	0	0.021889	1	13335	13335		81.89	20.533	1	5113600			40221	6613	29594	29829	39152	39152		352			-0.08423674430446226
QEDHPIMSF	9	Oxidation (M)	_QEDHPIM(Oxidation (M))SF_		QEDHPIM(1)SF		QEDHPIM(110)SF	0	0	1		nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26;ENSG00000162923|ENST00000414423|WDR26;ENST00000486652.5_1_1:224577539-224589708:-|nuORF;ENST00000479727.1_1_1:224585697-224586694:-|nuORF	nc|ENSG00000162923|Q9H7D7-2|WDR26	nc|ENSG00000162923|Q9H7D7-2|WDR26	MULTI-MSMS	A375_MHC_IP_R2	2	560.6419067382812	2	560.242406	1118.47026	-1.0014	-0.00056101	0.25189	0.00014112	-0.74949	-0.0004199	560.2425695461624	38.298	0.55945	39.073	38.791	39.351	0.77451					17	10	2	0	0	0	0.0094639	1	14092	14092		106.94	35.807	1	6525300			40222	6613	29594	29829	39153	39153		352			-0.08423674430446226
QEDHPIMSF	9	Unmodified	_QEDHPIMSF_					0	0	0		nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26;ENSG00000162923|ENST00000414423|WDR26;ENST00000486652.5_1_1:224577539-224589708:-|nuORF;ENST00000479727.1_1_1:224585697-224586694:-|nuORF	nc|ENSG00000162923|Q9H7D7-2|WDR26	nc|ENSG00000162923|Q9H7D7-2|WDR26	MULTI-MSMS	A375_MHC_IP_R1	1	552.6450805664062	2	552.244949	1102.47534	-0.55228	-0.00030499	0.068952	3.8079E-05	-0.48333	-0.00026691	552.2452003612766	64.029	0.86406	64.029	63.58	64.444	0					28	16	2	0	0	0	0.0099105	1	23141	23141		118.89	47.761	1	4776200			40223	6613	29594	29830	39154	39154					-0.07179370567814658
QEDHPIMSF	9	Unmodified	_QEDHPIMSF_					0	0	0		nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26;ENSG00000162923|ENST00000414423|WDR26;ENST00000486652.5_1_1:224577539-224589708:-|nuORF;ENST00000479727.1_1_1:224585697-224586694:-|nuORF	nc|ENSG00000162923|Q9H7D7-2|WDR26	nc|ENSG00000162923|Q9H7D7-2|WDR26	MULTI-MSMS	A375_MHC_IP_R2	2	552.6447143554688	2	552.244949	1102.47534	-0.73409	-0.0004054	0.22071	0.00012188	-0.51338	-0.00028351	552.2450552405559	63.235	1.0644	63.977	63.383	64.447	0.74198					34	20	3	0	0	0	0.010171	1	23933	23933		96.111	34.753	1	4059300			40224	6613	29594	29830	39155	39155					-0.07179370567814658
QEDKNFAQSY	10	Unmodified	_QEDKNFAQSY_					0	0	0		ENSG00000184361|ENST00000331780|SPATA32	ENSG00000184361|ENST00000331780|SPATA32	ENSG00000184361|ENST00000331780|SPATA32	MULTI-MSMS	A375_MHC_IP_R1	1	615.6749877929688	2	615.275292	1228.53603	-0.17012	-0.00010467	-0.46225	-0.00028441	-0.63237	-0.00038908	615.2745931444407	82.41	0.71124	82.41	81.961	82.672	0					18	13	2	0	0	0	0.52785	1	30139	30139		26.268	3.5319	1	4243300			40225	8575	29595	29831	39156	39156					-0.06909561983889034
QEDKNFAQSY	10	Unmodified	_QEDKNFAQSY_					0	0	0		ENSG00000184361|ENST00000331780|SPATA32	ENSG00000184361|ENST00000331780|SPATA32	ENSG00000184361|ENST00000331780|SPATA32	MULTI-MSMS	A375_MHC_IP_R2	2	614.6668701171875	2	615.275292	1228.53603	-0.67921	-0.0004179	-2.2812	-0.0014036	-2.9604	-0.0018215	615.2747659293207	81.677	1.4217	82.42	81.518	82.94	0.74293					45	27	3	0	0	0	0.42311	1	31102	31102		32.786	1.5173	1	4665800			40226	8575	29595	29831	39157	39157					-0.06909561983889034
QEDLRTFSW	9	Unmodified	_QEDLRTFSW_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MULTI-MSMS	A375_MHC_IP_R1	1	591.6830444335938	2	591.28292	1180.55129	-0.16644	-9.8415E-05	0.21178	0.00012522	0.045342	2.681E-05	591.2829934378046	82.392	1.0635	82.392	82.011	83.075	0					64	20	4	0	0	0	0.00075692	2	30073	30073;30291		197.81	112.16	1	56656000			40227	5591	29596	29832	39158;39159	39158					-0.031766503960625414
QEDLRTFSW	9	Unmodified	_QEDLRTFSW_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MULTI-MSMS	A375_MHC_IP_R2	2	591.443603515625	2	591.28292	1180.55129	-0.63306	-0.00037432	0.026711	1.5794E-05	-0.60635	-0.00035852	591.2828831707102	81.712	0.96397	82.455	82.078	83.042	0.74293					57	18	4	0	0	0	0.0098082	3	31162	30963;30974;31162		176.43	111.19	1	50908000			40228	5591	29596	29832	39160;39161;39162	39162					-0.031766503960625414
QEDPKTLNF	9	Unmodified	_QEDPKTLNF_					0	0	0		ENSG00000133858|ENST00000378743|ZFC3H1;nc|ENSG00000133858|O60293-2|ZFC3H1;nc|ENSG00000133858|O60293-4|ZFC3H1	ENSG00000133858|ENST00000378743|ZFC3H1	ENSG00000133858|ENST00000378743|ZFC3H1	MULTI-MSMS	A375_MHC_IP_R1	1	546.1885986328125	2	546.272021	1090.52949	-0.16423	-8.9713E-05	-0.41023	-0.0002241	-0.57446	-0.00031381	546.2718241091204	48.401	0.70929	48.401	48.071	48.78	0					23	13	2	0	0	0	0.0094639	1	17080	17080		106.94	50.763	1	8597800			40229	4533	29597	29833	39163	39163					-0.012154551446201367
QEDPKTLNF	9	Unmodified	_QEDPKTLNF_					0	0	0		ENSG00000133858|ENST00000378743|ZFC3H1;nc|ENSG00000133858|O60293-2|ZFC3H1;nc|ENSG00000133858|O60293-4|ZFC3H1	ENSG00000133858|ENST00000378743|ZFC3H1	ENSG00000133858|ENST00000378743|ZFC3H1	MULTI-MSMS	A375_MHC_IP_R2	2	546.188720703125	2	546.272021	1090.52949	-0.6542	-0.00035737	0.2031	0.00011095	-0.4511	-0.00024642	546.2719475800861	47.626	0.55914	48.387	48.174	48.733	0.76128					24	10	3	0	0	0	0.19747	1	17914	17914		38.176	15.439	1	7326800			40230	4533	29597	29833	39164	39164					-0.012154551446201367
QEDPLPLAF	9	Unmodified	_QEDPLPLAF_					0	0	0		ENSG00000073536|ENST00000442241|NLE1;ENST00000593176.1_1_17:33464206-33469153:-|nuORF	ENSG00000073536|ENST00000442241|NLE1	ENSG00000073536|ENST00000442241|NLE1	MULTI-MSMS	A375_MHC_IP_R1	1	515.2160034179688	2	515.266207	1028.51786	-0.33321	-0.00017169	1.0306	0.00053104	0.69741	0.00035935	515.2668259811805	126.08	0.25049	126.08	125.9	126.15	0					5	4	2	0	0	0	0.037683	1	48079	48079		69.105	40.618	1	2599300			40231	1563	29598	29834	39165	39165					0.004743478320506256
QEDPLPLAF	9	Unmodified	_QEDPLPLAF_					0	0	0		ENSG00000073536|ENST00000442241|NLE1;ENST00000593176.1_1_17:33464206-33469153:-|nuORF	ENSG00000073536|ENST00000442241|NLE1	ENSG00000073536|ENST00000442241|NLE1	MULTI-MSMS	A375_MHC_IP_R2	2	515.2154541015625	2	515.266207	1028.51786	-0.72038	-0.00037119	-0.74576	-0.00038427	-1.4661	-0.00075545	515.767229016896	125.65	0.20195	125.95	125.82	126.02	0.2951					5	3	2	0	0	0	0.015701	1	49023	49023		88.954	52.91	1	4377000			40232	1563	29598	29834	39166	39166					0.004743478320506256
QEDPNYSPQRF	11	Unmodified	_QEDPNYSPQRF_					0	0	0		nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6	nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-4|BAG6	MULTI-MSMS	A375_MHC_IP_R1	1	691.212646484375	2	690.812573	1379.61059	-0.40202	-0.00027772	-0.028142	-1.9441E-05	-0.43016	-0.00029716	690.8126070989402	39.197	0.50858	39.197	38.933	39.441	0					22	9	3	0	0	0	3.2082E-08	1	13351	13351		160.97	127.52	1	5788000			40233	9446	29599	29835	39167	39167					-0.06402799172542473
QEDPNYSPQRF	11	Unmodified	_QEDPNYSPQRF_					0	0	0		nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6	nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-4|BAG6	MULTI-MSMS	A375_MHC_IP_R2	2	691.2118530273438	2	690.812573	1379.61059	-1.0513	-0.00072624	0.1547	0.00010687	-0.89659	-0.00061937	690.8126122761976	38.517	0.50899	39.292	39.047	39.556	0.77451					23	9	3	0	0	0	7.7132E-17	1	14200	14200		196.06	155.82	1	5982700			40234	9446	29599	29835	39168	39168					-0.06402799172542473
QEDQGLTKDY	10	Unmodified	_QEDQGLTKDY_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	599.1746215820312	2	598.775125	1195.5357	-0.42867	-0.00025667	0.37171	0.00022257	-0.05696	-3.4106E-05	598.775300526065	28.313	0.3534	28.313	28.188	28.541	0					8	6	2	0	0	0	0.072569	1	8763	8763		85.764	40.065	1	3208600			40235	998	29600	29836	39169	39169					-0.054249817037543835
QEDQRDLIF	9	Unmodified	_QEDQRDLIF_					0	0	0		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA;ENST00000474757.1_1_X:55757854-55777647:+|nuORF	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-SECPEP	A375_MHC_IP_R1	1	582.687255859375	2	582.288202	1162.56185	-0.62576	-0.00036438	2.0313	0.0011828	1.4056	0.00081844	582.2896108830531	67.998	0.65701	67.998	67.704	68.361	0					17	12	2	0	0	0	0.14606	1	24671	24671		40.239	0.28951	1	1305700			40236	1784	29601	29837	39170	39170					-0.012926677416317034
QEDRALRSF	9	Unmodified	_QEDRALRSF_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	A375_MHC_IP_R1	1	374.9278869628906	3	374.528117	1120.56252	0.24488	9.1714E-05	0.11892	4.4538E-05	0.3638	0.00013625	374.52817439070617	27.509	0.75901	27.509	27.128	27.887	0					38	14	4	0	0	0	0.20451	1	8336	8336		46.022	32.504	1	14806000			40237	3330	29602	29838	39171	39171					0.007061716981070276
QEDRALRSF	9	Unmodified	_QEDRALRSF_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	A375_MHC_IP_R2	2	374.92791748046875	3	374.528117	1120.56252	0.10876	4.0733E-05	-0.018642	-6.9818E-06	0.090115	3.3751E-05	374.5281164576279	26.831	0.76692	27.491	27.109	27.876	0.65992					37	14	4	0	0	0	0.015196	1	9111	9111		89.609	43.869	1	19617000			40238	3330	29602	29838	39172	39172					0.007061716981070276
QEDRKEKAYN	10	Unmodified	_QEDRKEKAYN_					0	0	0			REV__ENSG00000258890|ENST00000556440|CEP95;REV__ENST00000553956.6_1_17:62527116-62533894:+|nuORF	REV__ENST00000553956.6_1_17:62527116-62533894:+|nuORF	MSMS	A375_MHC_IP_R2	2	427.7023620605469	3	427.545836	1279.61568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.534	1	64.275	63.775	64.775	0.74022								0	0	0	0.15547	1	24087	24087		3.0723	1.33	1		+		40239	22900;26073	29603	29839	39173	39173					-0.012944953099122358
QEDSLDGCDD	10	Unmodified	_QEDSLDGCDD_					0	0	0			REV__ENST00000502726.5_1_4:47685742-47840047:-|nuORF	REV__ENST00000502726.5_1_4:47685742-47840047:-|nuORF	MSMS	A375_MHC_IP_R1	1	548.671630859375	2	548.6904	1095.36625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.68	1	104.68	104.18	105.18	0								0	0	0	0.15465	1	38436	38436		5.7319	1.4026	1		+		40240	19469	29604	29840	39174	39174					-0.17762046048619595
QEDTARTL	8	Unmodified	_QEDTARTL_					0	0	0		nc|ENSG00000115266|O95996-3|APC2;ENSG00000115266|ENST00000590469|APC2;ENST00000593146.1_3_19:1452985-1457289:+|nuORF	nc|ENSG00000115266|O95996-3|APC2	nc|ENSG00000115266|O95996-3|APC2	MSMS	A375_MHC_IP_R1	1	467.1453857421875	2	467.235439	932.456324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.774	1	41.774	41.274	42.274	0								0	0	0	0.16876	1	14443	14443		24.021	5.8856	1				40241	3289	29605	29841	39175	39175					-0.012605838672243408
QEEEQWREF	9	Unmodified	_QEEEQWREF_					0	0	0		nc|ENSG00000204644|Q9NU63-2|ZFP57;ENSG00000204644|ENST00000376883|ZFP57	nc|ENSG00000204644|Q9NU63-2|ZFP57	nc|ENSG00000204644|Q9NU63-2|ZFP57	MULTI-SECPEP	A375_MHC_IP_R1	1	640.2266845703125	2	640.780741	1279.54693	-0.75861	-0.0004861	1.5034	0.00096337	0.74482	0.00047726	640.7822155767518	66.079	0.35411	66.079	65.768	66.122	0					10	6	2	0	0	0	0.75466	1	23839	23839		12.532	0.29089	1	1290100			40242	9473	29606	29842	39176	39176					-0.08166159609618262
QEEETEFME	9	Unmodified	_QEEETEFME_					0	0	0		CCDC89|p.K40M|1|0.43|ENSG00000179071|chr11:85686012-85686012|T/A|missense_variant	CCDC89|p.K40M|1|0.43|ENSG00000179071|chr11:85686012-85686012|T/A|missense_variant	CCDC89|p.K40M|1|0.43|ENSG00000179071|chr11:85686012-85686012|T/A|missense_variant	MSMS	A375_MHC_IP_R1	1	586.16943359375	2	586.226619	1170.43868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.792	1	56.792	56.292	57.292	0								0	0	0	0.15486	1	20352	20352		6.7232	0	1				40243	322	29607	29843	39177	39177					-0.13971711975068501
QEEGATIQW	9	Unmodified	_QEEGATIQW_					0	0	0		ENSG00000278053|ENST00000617633|DDX52	ENSG00000278053|ENST00000617633|DDX52	ENSG00000278053|ENST00000617633|DDX52	MULTI-MSMS	A375_MHC_IP_R2	2	531.187255859375	2	531.248546	1060.48254	-0.69861	-0.00037113	0.54869	0.00029149	-0.14991	-7.9641E-05	531.2487943011137	74.603	0.76291	75.34	74.958	75.721	0.73752					20	14	2	0	0	0	0.4867	1	28308	28308		20.454	3.3407	1	941050			40244	10033	29608	29844	39178	39178					-0.04528314695744484
QEEGKFWND	9	Unmodified	_QEEGKFWND_					0	0	0		nc|ENSG00000099139|Q92824|PCSK5	nc|ENSG00000099139|Q92824|PCSK5	nc|ENSG00000099139|Q92824|PCSK5	MSMS	A375_MHC_IP_R2	2	576.6915283203125	2	576.751453	1151.48835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.732	1	100.5	99.995	101	0.76278								0	0	0	0.15486	1	37830	37830		9.3831	1.2276	1				40245	14501	29609	29845	39179	39179					-0.08133216184091907
QEEGMTWWYRW	11	Unmodified	_QEEGMTWWYRW_					0	0	0		ENST00000474734.5_1_9:136325188-136330196:+|nuORF;ENST00000489519.1_1_9:136325188-136330570:+|nuORF;nc|ENSG00000160325|Q9UGQ2-2|CACFD1;ENSG00000160325|ENST00000316948|CACFD1;nc|ENSG00000160325|Q9UGQ2-3|CACFD1;nc|ENSG00000160325|Q9UGQ2-4|CACFD1	ENST00000474734.5_1_9:136325188-136330196:+|nuORF	ENST00000474734.5_1_9:136325188-136330196:+|nuORF	MSMS	A375_MHC_IP_R1	1	524.6598510742188	3	524.562721	1570.66633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.25	1	113.25	112.75	113.75	0								0	0	0	0.16334	1	41510	41510		1.3296	0	1				40246	6418	29610	29846	39180	39180					-0.0961728925656189
QEEIGSRNF	9	Unmodified	_QEEIGSRNF_					0	0	0		nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;nc|ENSG00000089159|P49023-3|PXN;ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-4|PXN;ENST00000323871.9_2_12:120650119-120654597:-|nuORF	nc|ENSG00000089159|P49023-2|PXN	nc|ENSG00000089159|P49023-2|PXN	MULTI-SECPEP	A375_MHC_IP_R1	1	540.6590576171875	2	540.259445	1078.50434	-0.78563	-0.00042444	0.36277	0.00019599	-0.42286	-0.00022846	540.2594472185308	32.256	0.40921	32.256	32.075	32.485	0					13	7	2	0	0	0	0.20059	1	10437	10437		51.415	7.5569	1	3283600			40247	1917	29611	29847	39181	39181					-0.03177509947181534
QEEIGSRNF	9	Unmodified	_QEEIGSRNF_					0	0	0		nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;nc|ENSG00000089159|P49023-3|PXN;ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-4|PXN;ENST00000323871.9_2_12:120650119-120654597:-|nuORF	nc|ENSG00000089159|P49023-2|PXN	nc|ENSG00000089159|P49023-2|PXN	MULTI-SECPEP	A375_MHC_IP_R2	2	540.6852416992188	2	540.259445	1078.50434	-0.86717	-0.0004685	0.79283	0.00042833	-0.074344	-4.0165E-05	540.2598561901355	31.608	0.55834	32.345	32.146	32.704	0.73692					15	10	2	0	0	0	0.37663	1	11228	11228		36.506	2.4038	1	2390900			40248	1917	29611	29847	39182	39182					-0.03177509947181534
QEEIGSRNFF	10	Unmodified	_QEEIGSRNFF_					0	0	0		nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;nc|ENSG00000089159|P49023-3|PXN;ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-4|PXN;ENST00000323871.9_2_12:120650119-120654597:-|nuORF	nc|ENSG00000089159|P49023-2|PXN	nc|ENSG00000089159|P49023-2|PXN	MULTI-SECPEP	A375_MHC_IP_R1	1	614.1934814453125	2	613.793652	1225.57275	-0.34255	-0.00021026	0.18797	0.00011537	-0.15459	-9.4885E-05	613.7937746861309	64.016	0.8113	64.016	63.684	64.495	0					44	15	4	0	0	0	0.012511	1	23117	23117		125.04	99.638	1	25584000			40249	1917	29612	29848	39183	39183					-0.03101265367331507
QEEIGSRNFF	10	Unmodified	_QEEIGSRNFF_					0	0	0		nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;nc|ENSG00000089159|P49023-3|PXN;ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-4|PXN;ENST00000323871.9_2_12:120650119-120654597:-|nuORF	nc|ENSG00000089159|P49023-2|PXN	nc|ENSG00000089159|P49023-2|PXN	MULTI-MSMS	A375_MHC_IP_R2	2	614.19384765625	2	613.793652	1225.57275	-0.52154	-0.00032012	-0.16694	-0.00010247	-0.68848	-0.00042258	613.7934870205876	63.274	0.76257	64.014	63.734	64.496	0.74022					46	14	4	0	0	0	7.7883E-07	1	23952	23952		197.81	145.54	1	19764000			40250	1917	29612	29848	39184	39184					-0.03101265367331507
QEEILGSTRL	10	Unmodified	_QEEILGSTRL_					0	0	0		nc|ENSG00000137171|Q9NSK0-4|KLC4;nc|ENSG00000137171|Q9NSK0-5|KLC4;ENSG00000137171|ENST00000347162|KLC4;nc|ENSG00000137171|Q9NSK0-3|KLC4;nc|ENSG00000137171|Q9NSK0-2|KLC4	nc|ENSG00000137171|Q9NSK0-4|KLC4	nc|ENSG00000137171|Q9NSK0-4|KLC4	MULTI-SECPEP	A375_MHC_IP_R1	1	573.6583251953125	2	573.311677	1144.6088	-0.24342	-0.00013956	-4.4356	-0.002543	-4.6791	-0.0026826	573.3100088077516	57.593	0.60834	57.593	57.518	58.126	0					14	11	2	0	0	0	0.5901	1	20809	20809		37.771	7.9307	1	1210200			40251	4865	29613	29849	39185	39185					0.0422819180953411
QEEIQTKGK	9	Unmodified	_QEEIQTKGK_					0	0	0		nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-4|KIF20B	MULTI-SECPEP	A375_MHC_IP_R1	1	530.6875610351562	2	530.785296	1059.55604	-0.49821	-0.00026444	2.1137	0.0011219	1.6155	0.00085749	530.7854822136169	39.314	0.76091	39.314	38.832	39.592	0					31	14	4	0	0	0	0.59098	1	13254	13254		27.629	0	1	10531000			40252	14633	29614	29850	39186	39186					0.02864233746709033
QEELHKIQEQL	11	Unmodified	_QEELHKIQEQL_					0	0	0		ENST00000474550.5_1_2:101587368-101598935:+|nuORF;ENSG00000170485|ENST00000335681|NPAS2	ENST00000474550.5_1_2:101587368-101598935:+|nuORF	ENST00000474550.5_1_2:101587368-101598935:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	465.08184814453125	3	465.580658	1393.72014	-0.2387	-0.00011113	0.13349	6.2149E-05	-0.10521	-4.8984E-05	465.9151677949892	39.416	0.20209	39.416	39.289	39.491	0					6	3	2	0	0	0	0.99625	1	13499	13499		4.7159	2.2811	1	2109800			40253	7512	29615	29851	39187	39187					0.039032064467846794
QEEMISFGD	9	Unmodified	_QEEMISFGD_					0	0	0		NCAPH|p.L409F|1|0.47|ENSG00000121152|chr2:96359061-96359061|C/T|missense_variant	NCAPH|p.L409F|1|0.47|ENSG00000121152|chr2:96359061-96359061|C/T|missense_variant	NCAPH|p.L409F|1|0.47|ENSG00000121152|chr2:96359061-96359061|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	528.1709594726562	2	528.221139	1054.42773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.361	1	47.361	46.861	47.861	0								0	0	0	0.1521	1	16657	16657		18.146	4.6385	1				40254	14981	29616	29852	39188	39188					-0.09731069558665695
QEEMRTKDQ	9	Unmodified	_QEEMRTKDQ_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP;nc|ENSG00000133030|Q6WCQ1-3|MPRIP;nc|ENSG00000133030|Q6WCQ1|MPRIP;nc|ENSG00000133030|Q6WCQ1-2|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	A375_MHC_IP_R1	1	582.7092895507812	2	582.769319	1163.52409	-0.033857	-1.9731E-05	0.098581	5.745E-05	0.064725	3.772E-05	582.7693793192195	54.126	0.80967	54.126	53.809	54.619	0					31	15	3	0	0	0	0.6324	1	19488	19488		13.042	0	1	8001500			40255	4476	29617	29853	39189	39189					-0.051135019987214037
QEENKILFY	9	Unmodified	_QEENKILFY_					0	0	0		ENST00000496187.5_1_7:6863683-6865828:-|nuORF;ENST00000486840.1_1_7:6864269-6865756:-|nuORF;ENST00000461592.1_1_7:5938373-5940013:+|nuORF;ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000464543.1_1_7:6864046-6865828:-|nuORF;ENST00000478672.1_1_7:5938430-5940236:+|nuORF	ENST00000496187.5_1_7:6863683-6865828:-|nuORF;ENSG00000146574|ENST00000316731|CCZ1B;ENST00000464543.1_1_7:6864046-6865828:-|nuORF	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-SECPEP	A375_MHC_IP_R1	1	592.7030639648438	2	592.303321	1182.59209	-0.21696	-0.00012851	0.10164	6.02E-05	-0.11533	-6.8309E-05	592.3031997517218	71.185	0.46236	71.185	70.902	71.364	0					12	8	2	0	0	0	0.65246	1	25881	25881		15.847	5.0233	1	2983900			40256	3797;12719;12227	29618	29854	39190	39190					0.008096909235746352
QEENKILFY	9	Unmodified	_QEENKILFY_					0	0	0		ENST00000496187.5_1_7:6863683-6865828:-|nuORF;ENST00000486840.1_1_7:6864269-6865756:-|nuORF;ENST00000461592.1_1_7:5938373-5940013:+|nuORF;ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000464543.1_1_7:6864046-6865828:-|nuORF;ENST00000478672.1_1_7:5938430-5940236:+|nuORF	ENST00000496187.5_1_7:6863683-6865828:-|nuORF;ENSG00000146574|ENST00000316731|CCZ1B;ENST00000464543.1_1_7:6864046-6865828:-|nuORF	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-MSMS	A375_MHC_IP_R2	2	592.22509765625	2	592.303321	1182.59209	-0.51719	-0.00030633	-0.18433	-0.00010918	-0.70152	-0.00041551	592.3028828316607	70.339	0.60899	71.074	70.844	71.453	0.73421					14	11	2	0	0	0	0.021889	1	26702	26702		81.89	34.142	1	2022600			40257	3797;12719;12227	29618	29854	39191	39191					0.008096909235746352
QEENLKLKY	9	Unmodified	_QEENLKLKY_					0	0	0		ENSG00000113643|ENST00000231572|RARS1;ENST00000524082.5_1_5:167913503-167919924:+|nuORF;ENST00000521939.5_1_5:167913503-167921691:+|nuORF	ENSG00000113643|ENST00000231572|RARS1	ENSG00000113643|ENST00000231572|RARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	389.6145935058594	3	388.880156	1163.61864	0.24875	9.6735E-05	0.47042	0.00018294	0.71917	0.00027967	388.88032939067045	31.694	0.60988	31.694	31.414	32.024	0					30	11	4	0	0	0	0.32966	1	10154	10154		49.527	38.628	1	15363000			40258	3170	29619	29855	39192	39192					0.04337379814887754
QEENTPFVPD	10	Unmodified	_QEENTPFVPD_					0	0	0		ENST00000574515.1_1_17:2894647-2911342:+|nuORF;nc|ENSG00000132359|Q684P5-3|RAP1GAP2;nc|ENSG00000132359|Q684P5-2|RAP1GAP2;ENSG00000132359|ENST00000254695|RAP1GAP2	ENST00000574515.1_1_17:2894647-2911342:+|nuORF	ENST00000574515.1_1_17:2894647-2911342:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	588.7073364257812	2	588.264393	1174.51423	-0.24427	-0.0001437	-0.16644	-9.7912E-05	-0.41071	-0.00024161	588.2641649632758	57.178	0.56145	57.178	56.905	57.467	0					21	10	3	0	0	0	0.63639	1	20413	20413		18.146	7.3224	1	7365500			40259	4398	29620	29856	39193	39193					-0.06604366732472045
QEEPPYIHQLG	11	Unmodified	_QEEPPYIHQLG_					0	0	0		ENST00000461395.5_1_2:220378960-220396865:+|nuORF;nc|ENSG00000072182|Q96FT7-2|ASIC4;ENST00000474489.5_1_2:220381987-220402187:+|nuORF;nc|ENSG00000072182|Q96FT7-1|ASIC4;ENSG00000072182|ENST00000358078|ASIC4	ENST00000461395.5_1_2:220378960-220396865:+|nuORF	ENST00000461395.5_1_2:220378960-220396865:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	437.95050048828125	3	437.550698	1309.63027	-0.72409	-0.00031682	-0.041984	-1.837E-05	-0.76607	-0.00033519	437.5506070667055	26.047	0.35635	26.707	26.551	26.907	0.65992					11	6	2	0	0	0	0.72964	1	8787	8787		9.2438	3.4603	1	4182500			40260	12184	29621	29857	39194	39194					-0.012164231617589394
QEEQYLEQRVQ	11	Unmodified	_QEEQYLEQRVQ_					0	0	0			REV__ENSG00000138587|ENST00000260453|MNS1	REV__ENSG00000138587|ENST00000260453|MNS1	MULTI-SECPEP	A375_MHC_IP_R1	1	483.6579895019531	3	483.9038	1448.68957	-0.22264	-0.00010774	-2.6293	-0.0012723	-2.852	-0.0013801	483.9015756075553	70.555	0.30712	70.555	70.341	70.648	0					6	5	2	0	0	0	0.99916	1	25546	25546		2.4348	2.1055	1	857630	+		40261	19099	29622	29858	39195	39195					-0.016825719382723037
QEESLRQDY	9	Unmodified	_QEESLRQDY_					0	0	0		nc|ENSG00000139737|Q8ND83-2|SLAIN1;nc|ENSG00000139737|Q8ND83-4|SLAIN1;nc|ENSG00000139737|Q8ND83|SLAIN1;ENSG00000139737|ENST00000418532|SLAIN1	nc|ENSG00000139737|Q8ND83-2|SLAIN1	nc|ENSG00000139737|Q8ND83-2|SLAIN1	MULTI-MSMS	A375_MHC_IP_R1	1	584.1896362304688	2	584.267467	1166.52038	-0.1467	-8.5709E-05	0.61419	0.00035885	0.46749	0.00027314	584.2680196575582	56.672	0.60911	56.672	56.347	56.956	0					15	11	3	0	0	0	0.51106	1	20268	20268		19.257	3.1079	1	1571300			40262	5108	29623	29859	39196	39196					-0.05621848500959459
QEESSEGVEE	10	Unmodified	_QEESSEGVEE_					0	0	0			REV__nc|ENSG00000119139|Q9UDY2-6|TJP2	REV__nc|ENSG00000119139|Q9UDY2-6|TJP2	MSMS	A375_MHC_IP_R2	2	561.7119750976562	2	561.725298	1121.43604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.025	1	88.757	88.257	89.257	0.7318								0	0	0	0.15502	1	33492	33492		4.5289	0.19963	1		+		40263	18063	29624	29860	39197	39197					-0.11981844108345285
QEEVTQGPHS	10	Unmodified	_QEEVTQGPHS_					0	0	0		nc|ENSG00000029534|P16157-14|ANK1;nc|ENSG00000029534|P16157-8|ANK1;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-21|ANK1;nc|ENSG00000029534|P16157|ANK1;ENSG00000029534|ENST00000289734|ANK1;nc|ENSG00000029534|P16157-16|ANK1;nc|ENSG00000029534|P16157-5|ANK1;nc|ENSG00000029534|P16157-10|ANK1;nc|ENSG00000029534|P16157-15|ANK1;nc|ENSG00000029534|P16157-13|ANK1;nc|ENSG00000029534|P16157-4|ANK1;nc|ENSG00000029534|P16157-7|ANK1;nc|ENSG00000029534|P16157-6|ANK1;nc|ENSG00000029534|P16157-9|ANK1;nc|ENSG00000029534|P16157-11|ANK1;ENST00000524227.5_1_8:41519075-41530298:-|nuORF	nc|ENSG00000029534|P16157-14|ANK1	nc|ENSG00000029534|P16157-14|ANK1	MULTI-SECPEP	A375_MHC_IP_R2	2	556.6368408203125	2	556.25436	1110.49417	-0.86807	-0.00048287	1.7851	0.00099295	0.917	0.00051008	556.2551389578537	41.601	0.45678	42.375	42.098	42.555	0.77451					12	8	2	0	0	0	0.83447	1	15420	15420		18.373	14.044	1	913640			40264	1105	29625	29861	39198	39198					-0.05666117672421933
QEFCNLITF	9	Unmodified	_QEFCNLITF_					0	0	0		ENST00000400137.8_1_20:1349947-1350190:-|nuORF	ENST00000400137.8_1_20:1349947-1350190:-|nuORF	ENST00000400137.8_1_20:1349947-1350190:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	557.1845092773438	2	557.765517	1113.51648	-0.67902	-0.00037874	0.85498	0.00047688	0.17595	9.8141E-05	558.2668898560605	46.673	0.40718	46.673	46.596	47.003	0					11	7	2	0	0	0	0.62767	1	16515	16515		3.9444	0	1	925230			40265	11551	29626	29862	39199	39199					-0.0357360952837098
QEFDNHINSY	10	Unmodified	_QEFDNHINSY_					0	0	0		ENSG00000182348|ENST00000333190|ZNF804B;ZNF804B|p.L810Tfs*20|1|0.34|ENSG00000182348|chr7:89335404-89335405|-/A|frameshift_variant;ENSG00000170396|ENST00000302277|ZNF804A;nc|ENSG00000186566|Q9UKJ3-2|GPATCH8;ENSG00000186566|ENST00000591680|GPATCH8	ENSG00000182348|ENST00000333190|ZNF804B;ENSG00000170396|ENST00000302277|ZNF804A;nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	ENSG00000182348|ENST00000333190|ZNF804B	MULTI-SECPEP	A375_MHC_IP_R1	1	633.213623046875	2	633.772916	1265.53128	-0.70978	-0.00044984	0.18301	0.00011599	-0.52677	-0.00033385	633.7731509957725	40.168	0.51023	40.168	39.948	40.458	0					14	9	2	0	0	0	0.51493	1	13768	13768		38.176	25.935	1	1795900			40266	8401;7503;8759	29627	29863	39200	39200					-0.0908644612666194
QEFDPPKVY	9	Unmodified	_QEFDPPKVY_					0	0	0		nc|ENSG00000119772|Q9Y6K1-2|DNMT3A;DNMT3A|p.W860Lfs*4|1|0.64|ENSG00000119772|chr2:25235725-25235726|-/A|frameshift_variant;ENSG00000119772|ENST00000321117|DNMT3A;ENST00000474887.5_1_2:25458684-25467188:-|nuORF	nc|ENSG00000119772|Q9Y6K1-2|DNMT3A	nc|ENSG00000119772|Q9Y6K1-2|DNMT3A	MULTI-MSMS	A375_MHC_IP_R1	1	562.1767578125	2	561.776939	1121.53933	-0.52552	-0.00029522	-0.043649	-2.4521E-05	-0.56917	-0.00031975	561.7768995213395	58.811	0.76365	58.811	58.43	59.194	0					22	14	2	0	0	0	0.44024	1	21128	21128		22.736	5.6234	1	2325100			40267	779	29628	29864	39201	39201					-0.016582671392370685
QEFDPPKVY	9	Unmodified	_QEFDPPKVY_					0	0	0		nc|ENSG00000119772|Q9Y6K1-2|DNMT3A;DNMT3A|p.W860Lfs*4|1|0.64|ENSG00000119772|chr2:25235725-25235726|-/A|frameshift_variant;ENSG00000119772|ENST00000321117|DNMT3A;ENST00000474887.5_1_2:25458684-25467188:-|nuORF	nc|ENSG00000119772|Q9Y6K1-2|DNMT3A	nc|ENSG00000119772|Q9Y6K1-2|DNMT3A	MULTI-SECPEP	A375_MHC_IP_R2	2	562.1762084960938	2	561.776939	1121.53933	-0.87577	-0.00049199	-0.056028	-3.1475E-05	-0.9318	-0.00052346	561.7768865086722	58.251	0.81008	59	58.477	59.287	0.74894					22	15	2	0	0	0	0.054506	1	22050	22050		79.596	31.848	1	1710400			40268	779	29628	29864	39202	39202					-0.016582671392370685
QEFDSGLLHW	10	Unmodified	_QEFDSGLLHW_					0	0	0		ARID1A|p.R1879Sfs*22|1|0.55|ENSG00000117713|chr1:26779531-26779532|-/T|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A	ARID1A|p.R1879Sfs*22|1|0.55|ENSG00000117713|chr1:26779531-26779532|-/T|frameshift_variant	ARID1A|p.R1879Sfs*22|1|0.55|ENSG00000117713|chr1:26779531-26779532|-/T|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	616.3439331054688	2	616.290745	1230.56694	-0.16647	-0.00010259	0.21004	0.00012944	0.043566	2.6849E-05	616.2908418915664	106.45	0.66676	106.45	106.11	106.78	0					26	12	3	0	0	0	0.55789	1	39173	39173		24.021	17.297	1	6905000			40269	177	29629	29865	39203	39203					-0.03912363878976066
QEFDSGLLHW	10	Unmodified	_QEFDSGLLHW_					0	0	0		ARID1A|p.R1879Sfs*22|1|0.55|ENSG00000117713|chr1:26779531-26779532|-/T|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A	ARID1A|p.R1879Sfs*22|1|0.55|ENSG00000117713|chr1:26779531-26779532|-/T|frameshift_variant	ARID1A|p.R1879Sfs*22|1|0.55|ENSG00000117713|chr1:26779531-26779532|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	616.6909790039062	2	616.290745	1230.56694	-0.62325	-0.0003841	0.2893	0.0001783	-0.33394	-0.00020581	616.2909184875833	105.64	0.66228	106.4	106.12	106.78	0.75977					28	12	3	0	0	0	0.034346	1	39936	39936		96.285	56.335	1	6613100			40270	177	29629	29865	39204	39204					-0.03912363878976066
QEFEEKSGRTF	11	Unmodified	_QEFEEKSGRTF_					0	0	0		ENST00000378726.1_1_1:1477448-1480390:-|nuORF;ENSG00000160075|ENST00000291386|SSU72	ENST00000378726.1_1_1:1477448-1480390:-|nuORF	ENST00000378726.1_1_1:1477448-1480390:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	453.6174621582031	3	453.217608	1356.63099	-0.52926	-0.00023987	0.020574	9.3246E-06	-0.50869	-0.00023055	453.21762214756797	26.196	0.55801	26.196	26.017	26.575	0					37	10	5	0	0	0	6.3164E-08	1	7778	7778		154.29	114.37	1	43841000			40271	6395	29630	29866	39205	39205					-0.03305628512725889
QEFEEKSGRTF	11	Unmodified	_QEFEEKSGRTF_					0	0	0		ENST00000378726.1_1_1:1477448-1480390:-|nuORF;ENSG00000160075|ENST00000291386|SSU72	ENST00000378726.1_1_1:1477448-1480390:-|nuORF	ENST00000378726.1_1_1:1477448-1480390:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	679.72314453125	2	679.322773	1356.63099	-0.95359	-0.0006478	0.24736	0.00016804	-0.70623	-0.00047976	679.3232713191783	26.227	0.40635	26.227	26.017	26.423	0					20	7	4	0	0	0	0.00018649	1	7802	7802		179.08	101.02	1	8684900			40272	6395	29630	29866	39206	39206					-0.03305628512725889
QEFEEKSGRTF	11	Unmodified	_QEFEEKSGRTF_					0	0	0		ENST00000378726.1_1_1:1477448-1480390:-|nuORF;ENSG00000160075|ENST00000291386|SSU72	ENST00000378726.1_1_1:1477448-1480390:-|nuORF	ENST00000378726.1_1_1:1477448-1480390:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	453.6173095703125	3	453.217608	1356.63099	-0.69646	-0.00031565	0.15934	7.2214E-05	-0.53712	-0.00024343	453.21767368703945	25.618	0.50762	26.278	26.094	26.602	0.65992					32	9	4	0	0	0	0.00019124	1	8579	8579		130.95	93.993	1	42204000			40273	6395	29630	29866	39207	39207					-0.03305628512725889
QEFEEKSGRTF	11	Unmodified	_QEFEEKSGRTF_					0	0	0		ENST00000378726.1_1_1:1477448-1480390:-|nuORF;ENSG00000160075|ENST00000291386|SSU72	ENST00000378726.1_1_1:1477448-1480390:-|nuORF	ENST00000378726.1_1_1:1477448-1480390:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	679.7222290039062	2	679.322773	1356.63099	-1.0966	-0.00074492	0.79765	0.00054186	-0.29891	-0.00020306	679.3234258361736	25.611	0.40695	26.27	26.144	26.551	0.65992					18	7	3	0	0	0	0.00058899	1	8589	8589		157.28	79.218	1	9161100			40274	6395	29630	29866	39208	39208					-0.03305628512725889
QEFEHVNGRW	10	Unmodified	_QEFEHVNGRW_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	A375_MHC_IP_R1	1	651.7040405273438	2	651.304718	1300.59488	-0.57903	-0.00037712	-0.23669	-0.00015416	-0.81572	-0.00053128	651.304522217482	36.826	0.45331	36.826	36.592	37.045	0					16	8	3	0	0	0	0.43567	1	12388	12388		32.037	16.789	1	4567000			40275	3005	29631	29867	39209	39209					-0.04339040898912572
QEFEHVNGRW	10	Unmodified	_QEFEHVNGRW_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	A375_MHC_IP_R2	2	651.703857421875	2	651.304718	1300.59488	-0.8858	-0.00057693	-0.074423	-4.8472E-05	-0.96022	-0.0006254	651.3046657245828	36.053	0.46027	36.817	36.638	37.099	0.76338					14	8	3	0	0	0	0.35113	1	13120	13120		37.075	27.531	1	5291200			40276	3005	29631	29867	39210	39210					-0.04339040898912572
QEFERNLARF	10	Unmodified	_QEFERNLARF_					0	0	0		nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF	nc|ENSG00000108312|P17480-2|UBTF	nc|ENSG00000108312|P17480-2|UBTF	MULTI-MSMS	A375_MHC_IP_R1	1	437.62652587890625	3	437.226438	1308.65748	0.1224	5.3517E-05	-0.28355	-0.00012398	-0.16115	-7.0459E-05	437.2263182288781	48.113	0.45444	48.113	47.768	48.223	0					12	8	2	0	0	0	0.5004	1	16968	16968		28.181	22.313	1	2068800			40277	2792	29632	29868	39211	39211					0.015501051692808687
QEFFFFNYL	9	Unmodified	_QEFFFFNYL_					0	0	0			REV__ENST00000409592.7_1_2:225630244-225630340:-|nuORF	REV__ENST00000409592.7_1_2:225630244-225630340:-|nuORF	MSMS	A375_MHC_IP_R1	1	627.7166748046875	2	627.795132	1253.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.609	1	96.609	96.109	97.109	0								0	0	0	0.1535	1	35503	35503		15.847	1.0089	1		+		40278	24470	29633	29869	39212	39212					-0.0409339024251949
QEFGADVRL	9	Unmodified	_QEFGADVRL_					0	0	0		ENSG00000141867|ENST00000679869|BRD4;nc|ENSG00000141867|O60885-2|BRD4;nc|ENSG00000141867|O60885-3|BRD4	ENSG00000141867|ENST00000679869|BRD4	ENSG00000141867|ENST00000679869|BRD4	MULTI-SECPEP	A375_MHC_IP_R1	1	518.1671142578125	2	517.766906	1033.51926	-0.4657	-0.00024112	0.21519	0.00011142	-0.25051	-0.00012971	517.7669577056618	63.248	0.82076	63.248	62.914	63.735	0					28	15	3	0	0	0	0.11887	1	22836	22836		71.708	21.775	1	7216100			40279	5275	29634	29870	39213	39213					0.0038398192079966975
QEFGADVRL	9	Unmodified	_QEFGADVRL_					0	0	0		ENSG00000141867|ENST00000679869|BRD4;nc|ENSG00000141867|O60885-2|BRD4;nc|ENSG00000141867|O60885-3|BRD4	ENSG00000141867|ENST00000679869|BRD4	ENSG00000141867|ENST00000679869|BRD4	MULTI-SECPEP	A375_MHC_IP_R2	2	518.16650390625	2	517.766906	1033.51926	-0.81832	-0.0004237	0.16787	8.6918E-05	-0.65044	-0.00033678	517.766889662545	62.462	0.60844	63.205	62.925	63.534	0.74263					31	11	4	0	0	0	0.53098	1	23662	23662		33.445	16.332	1	7531700			40280	5275	29634	29870	39214	39214					0.0038398192079966975
QEFKTDLRF	9	Unmodified	_QEFKTDLRF_					0	0	0		nc|ENSG00000273213|Q5TEC6|H3-7	nc|ENSG00000273213|Q5TEC6|H3-7	nc|ENSG00000273213|Q5TEC6|H3-7	MULTI-MSMS	A375_MHC_IP_R1	1	395.6084289550781	3	395.208384	1182.60332	0.052067	2.0577E-05	0.47422	0.00018741	0.52628	0.00020799	395.20842165345346	55.952	0.45461	55.952	55.79	56.244	0					20	8	4	0	0	0	0.22013	1	20050	20050		28.234	17.335	1	3007200			40281	14936	29635	29871	39215	39215					0.019325130176866878
QEFKTDLRF	9	Unmodified	_QEFKTDLRF_					0	0	0		nc|ENSG00000273213|Q5TEC6|H3-7	nc|ENSG00000273213|Q5TEC6|H3-7	nc|ENSG00000273213|Q5TEC6|H3-7	MULTI-MSMS	A375_MHC_IP_R2	2	395.6081237792969	3	395.208384	1182.60332	-0.26269	-0.00010382	0.31066	0.00012277	0.047963	1.8955E-05	395.2086435092485	55.19	0.45731	55.941	55.678	56.135	0.75075					12	8	2	0	0	0	0.41879	1	20847	20847		22.775	11.876	1	2016600			40282	14936	29635	29871	39216	39216					0.019325130176866878
QEFLDRNSQF	10	Unmodified	_QEFLDRNSQF_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	A375_MHC_IP_R1	1	642.7030639648438	2	642.304384	1282.59421	-0.44162	-0.00028365	0.2925	0.00018787	-0.14912	-9.578E-05	642.3041229981509	56.748	0.50962	56.748	56.498	57.007	0					21	9	3	0	0	0	2.7733E-05	1	20336	20336		159.1	103.6	1	3609100			40283	3161	29636	29872	39217	39217					-0.03577880338639261
QEFLDRNSQF	10	Unmodified	_QEFLDRNSQF_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	A375_MHC_IP_R2	2	643.205322265625	2	642.304384	1282.59421	-0.92624	-0.00059493	-0.10498	-6.7428E-05	-1.0312	-0.00066236	642.30423275257	56.02	0.51121	56.77	56.54	57.051	0.75015					16	9	2	0	0	0	0.069651	1	21202	21202		70.332	32.358	1	4156600			40284	3161	29636	29872	39218	39218					-0.03577880338639261
QEFMEESYY	9	Unmodified	_QEFMEESYY_					0	0	0			REV__ENSG00000132464|ENST00000396073|ENAM	REV__ENSG00000132464|ENST00000396073|ENAM	MSMS	A375_MHC_IP_R1	1	613.215576171875	2	613.239529	1224.46451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.024	1	89.024	88.524	89.524	0								0	0	0	0.15486	1	32698	32698		10.824	4.1008	1		+		40285	18654	29637	29873	39219	39219					-0.13874817732744305
QEFMEESYY	9	Unmodified	_QEFMEESYY_					0	0	0			REV__ENSG00000132464|ENST00000396073|ENAM	REV__ENSG00000132464|ENST00000396073|ENAM	MSMS	A375_MHC_IP_R1	1	613.1984252929688	2	613.239529	1224.46451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.11	1	89.11	88.61	89.61	0								0	0	0	0.1535	1	32732	32732		15.847	5.0233	1		+		40286	18654	29637	29873	39220	39220					-0.13874817732744305
QEFNLPVRY	9	Unmodified	_QEFNLPVRY_					0	0	0		ENSG00000144591|ENST00000313597|GMPPA;nc|ENSG00000144591|Q96IJ6-2|GMPPA	ENSG00000144591|ENST00000313597|GMPPA	ENSG00000144591|ENST00000313597|GMPPA	MULTI-SECPEP	A375_MHC_IP_R1	1	583.7033081054688	2	583.303655	1164.59276	-0.17181	-0.00010022	-0.93169	-0.00054346	-1.1035	-0.00064367	583.3030662056126	77.869	0.7149	77.869	77.486	78.201	0					23	13	2	0	0	0	5.1125E-05	1	28420	28420		199.75	148.12	1	12245000			40287	5496	29638	29874	39221	39221					0.01704530363304002
QEFNLPVRY	9	Unmodified	_QEFNLPVRY_					0	0	0		ENSG00000144591|ENST00000313597|GMPPA;nc|ENSG00000144591|Q96IJ6-2|GMPPA	ENSG00000144591|ENST00000313597|GMPPA	ENSG00000144591|ENST00000313597|GMPPA	MULTI-SECPEP	A375_MHC_IP_R2	2	583.7029418945312	2	583.303655	1164.59276	-0.41907	-0.00024445	-0.92137	-0.00053744	-1.3404	-0.00078188	583.3027979457089	77.14	0.86179	77.883	77.404	78.265	0.74293					34	16	3	0	0	0	1.7986E-08	1	29273	29273		199.75	148.12	1	13005000			40288	5496	29638	29874	39222	39222					0.01704530363304002
QEFPGKGKALF	11	Unmodified	_QEFPGKGKALF_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000534470.1_1_11:10820460-10820850:-|nuORF;ENST00000525606.5_1_11:10819365-10820979:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	A375_MHC_IP_R1	1	408.29217529296875	3	407.892396	1220.65536	0.12797	5.2199E-05	0.074403	3.0348E-05	0.20238	8.2548E-05	407.8923429590406	49.649	0.96487	49.649	49.033	49.998	0					35	18	3	0	0	0	0.62292	1	17584	17584		12.856	5.8189	1	2090400			40289	2929	29639	29875	39223	39223					0.05385676431478714
QEFQPSIAKKY	11	Unmodified	_QEFQPSIAKKY_					0	0	0		nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E	nc|ENSG00000154001|Q16537-3|PPP2R5E	nc|ENSG00000154001|Q16537-3|PPP2R5E	MULTI-MSMS	A375_MHC_IP_R1	1	447.640869140625	3	446.906594	1337.69795	-0.098899	-4.4199E-05	-0.13585	-6.0713E-05	-0.23475	-0.00010491	446.9065377648722	34.705	0.25232	34.705	34.507	34.759	0					11	4	4	0	0	0	0.68343	1	11476	11476		16.838	13.519	1	4114900			40290	6053	29640	29876	39224	39224					0.042610267690406545
QEFQPSIAKKY	11	Unmodified	_QEFQPSIAKKY_					0	0	0		nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E	nc|ENSG00000154001|Q16537-3|PPP2R5E	nc|ENSG00000154001|Q16537-3|PPP2R5E	MULTI-SECPEP	A375_MHC_IP_R2	2	447.3062744140625	3	446.906594	1337.69795	-0.80894	-0.00036152	0.22478	0.00010045	-0.58417	-0.00026107	447.2408587738721	34.003	0.25328	34.755	34.55	34.803	0.75225					14	4	4	0	0	0	0.54868	1	12224	12224		33.632	30.312	1	4725300			40291	6053	29640	29876	39225	39225					0.042610267690406545
QEFRASFNHF	10	Unmodified	_QEFRASFNHF_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-SECPEP	A375_MHC_IP_R1	1	428.60357666015625	3	428.203633	1281.58907	-0.095737	-4.0995E-05	0.36581	0.00015664	0.27007	0.00011565	428.203768814568	50.889	0.7091	50.889	50.613	51.322	0					44	13	5	0	0	0	0.021882	1	18029	18029		84.738	65.112	1	24906000			40292	4242	29641	29877	39226	39226					-0.04046139410593241
QEFRASFNHF	10	Unmodified	_QEFRASFNHF_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-SECPEP	A375_MHC_IP_R2	2	428.6620788574219	3	428.203633	1281.58907	-0.39955	-0.00017109	0.094404	4.0424E-05	-0.30515	-0.00013067	428.2036629446203	50.177	0.76275	50.932	50.599	51.361	0.75406					38	14	4	0	0	0	0.033308	1	18884	18884		121.93	91.226	1	17193000			40293	4242	29641	29877	39227	39227					-0.04046139410593241
QEFRELLQY	9	Unmodified	_QEFRELLQY_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP;ENST00000420737.1_1:146011237-146016889:+|nuORF	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-MSMS	A375_MHC_IP_R1	1	613.713623046875	2	613.31422	1224.61389	-0.49591	-0.00030415	-0.54407	-0.00033369	-1.04	-0.00063784	613.3140660755706	80.697	0.50699	80.697	80.441	80.948	0					22	9	3	0	0	0	0.0015806	1	29478	29478		148.27	77.135	1	3343800			40294	8133	29642	29878	39228	39228					0.010564956721509589
QEFRELLQY	9	Unmodified	_QEFRELLQY_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP;ENST00000420737.1_1:146011237-146016889:+|nuORF	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-MSMS	A375_MHC_IP_R2	2	614.2149658203125	2	613.31422	1224.61389	-0.52767	-0.00032363	-0.64332	-0.00039456	-1.171	-0.00071818	613.3141153375358	79.975	0.55797	80.72	80.453	81.011	0.74473					22	10	3	0	0	0	0.082375	1	30395	30395		53.833	28.433	1	2561900			40295	8133	29642	29878	39229	39229					0.010564956721509589
QEFRWNDEQ	9	Unmodified	_QEFRWNDEQ_					0	0	0			REV__ENST00000540438.5_1_11:113669964-113691034:-|nuORF	REV__ENST00000540438.5_1_11:113669964-113691034:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	626.1549072265625	2	626.273084	1250.53161	-0.74394	-0.00046591	-0.8676	-0.00054336	-1.6115	-0.0010093	626.272795678451	32.912	0.40507	32.912	32.734	33.14	0					10	7	2	0	0	0	0.75164	1	10687	10687		13.906	3.0821	1	1619300	+		40296	16368	29643	29879	39230	39230					-0.083630264068006
QEFTRHHLL	9	Unmodified	_QEFTRHHLL_					0	0	0		ENST00000545560.6_1_13:102220158-102220191:+|nuORF	ENST00000545560.6_1_13:102220158-102220191:+|nuORF	ENST00000545560.6_1_13:102220158-102220191:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	590.7208862304688	2	590.814722	1179.61489	-0.80738	-0.00047701	-2.0035	-0.0011837	-2.8109	-0.0016607	590.8133611784973	54.369	0.20193	55.12	54.967	55.169	0.75075					6	3	2	0	0	0	0.65246	1	20525	20525		15.847	0	1	969850			40297	13325	29644	29880	39231	39231					0.03226754831712242
QEFWVSFF	8	Unmodified	_QEFWVSFF_					0	0	0		ENST00000396045.7_1_7:36894090-36894324:-|nuORF	ENST00000396045.7_1_7:36894090-36894324:-|nuORF	ENST00000396045.7_1_7:36894090-36894324:-|nuORF	MSMS	A375_MHC_IP_R2	2	545.1808471679688	2	545.255643	1088.49673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.02	1	94.764	94.264	95.264	0.74474								0	0	0	0.16876	1	35736	35736		23.148	6.2061	1				40298	11486	29645	29881	39232	39232					-0.04397617476797677
QEFYGDYI	8	Unmodified	_QEFYGDYI_					0	0	0		ENSG00000136631|ENST00000644510|VPS45;ENST00000460366.5_1_1:150039914-150049098:+|nuORF;ENST00000497638.2_1_1:150048975-150049098:+|nuORF	ENSG00000136631|ENST00000644510|VPS45	ENSG00000136631|ENST00000644510|VPS45	MULTI-MSMS	A375_MHC_IP_R2	2	518.16650390625	2	517.726915	1033.43928	-0.82814	-0.00042875	-0.37276	-0.00019299	-1.2009	-0.00062174	518.2277774995746	62.436	0.30443	63.178	63.079	63.383	0.74263					6	5	2	0	0	0	0.72008	1	23662	23662		28.487	6.7402	1	510480			40299	4803	29646	29882	39233	39233					-0.07610504473041146
QEGEFMLKF	9	Unmodified	_QEGEFMLKF_					0	0	0		nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	MULTI-MSMS	A375_MHC_IP_R1	1	565.6740112304688	2	564.773342	1127.53213	-0.48281	-0.00027268	-0.71775	-0.00040537	-1.2006	-0.00067804	565.2746529797256	94.228	0.50491	94.228	93.941	94.446	0					21	9	3	0	0	0	0.44024	1	34637	34637		22.736	5.6234	1	2021900			40300	2880	29647	29883	39234	39234					-0.02653323011327302
QEGGSPTQLL	10	Unmodified	_QEGGSPTQLL_					0	0	0			REV__ENSG00000172238|ENST00000306011|ATOH1	REV__ENSG00000172238|ENST00000306011|ATOH1	MULTI-SECPEP	A375_MHC_IP_R1	1	514.6738891601562	2	515.264196	1028.51384	-0.5084	-0.00026196	-0.075724	-3.9018E-05	-0.58412	-0.00030098	515.2645473411807	28.441	0.35368	28.441	28.238	28.592	0					12	6	3	0	0	0	0.6774	1	8754	8754		34.402	1.616	1	1593800	+		40301	21129	29648	29884	39235	39235					0.0007225833835491358
QEGKLFQLY	9	Unmodified	_QEGKLFQLY_					0	0	0		ENSG00000182154|ENST00000371443|MRPL41	ENSG00000182154|ENST00000371443|MRPL41	ENSG00000182154|ENST00000371443|MRPL41	MULTI-SECPEP	A375_MHC_IP_R1	1	563.7002563476562	2	563.300581	1124.58661	-0.57657	-0.00032478	0.070993	3.9991E-05	-0.50558	-0.00028479	563.3005915275327	80.753	0.60867	80.753	80.492	81.1	0					25	11	3	0	0	0	0.013591	1	29504	29504		118.07	55.496	1	3909000			40302	8379	29649	29885	39236	39236					0.029300121317419325
QEGKLFQLY	9	Unmodified	_QEGKLFQLY_					0	0	0		ENSG00000182154|ENST00000371443|MRPL41	ENSG00000182154|ENST00000371443|MRPL41	ENSG00000182154|ENST00000371443|MRPL41	MULTI-SECPEP	A375_MHC_IP_R2	2	563.7002563476562	2	563.300581	1124.58661	-0.48354	-0.00027238	-1.4059	-0.00079196	-1.8895	-0.0010643	563.2998377071247	79.893	0.66119	80.638	80.299	80.961	0.74473					23	12	3	0	0	0	0.03109	1	30333	30333		92.653	34.931	1	4639100			40303	8379	29649	29885	39237	39237					0.029300121317419325
QEGKLQQY	8	Unmodified	_QEGKLQQY_					0	0	0			REV__nc|ENSG00000128654|O75431-2|MTX2	REV__nc|ENSG00000128654|O75431-2|MTX2	MSMS	A375_MHC_IP_R2	2	497.17364501953125	2	497.253631	992.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.94	1	41.714	41.214	42.214	0.77451								0	0	0	0.16876	1	15176	15176		21.747	3.6003	1		+		40304	18463	29650	29886	39238	39238					-0.003837069705355134
QEGKNVIGL	9	Unmodified	_QEGKNVIGL_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159888592-159888742:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-SECPEP	A375_MHC_IP_R1	1	479.67156982421875	2	479.271824	956.529095	-0.20817	-9.977E-05	-0.024605	-1.1793E-05	-0.23278	-0.00011156	479.2717899947386	44.324	0.66695	44.324	44.01	44.676	0					29	12	3	0	0	0	0.3213	1	15428	15428		46.021	0	1	13304000			40305	6324	29651	29887	39239	39239					0.04909169926179402
QEGLDKAI	8	Unmodified	_QEGLDKAI_					0	0	0		GLYATL2|p.E112K|1|0.5|ENSG00000156689|chr11:58837157-58837157|C/T|missense_variant	GLYATL2|p.E112K|1|0.5|ENSG00000156689|chr11:58837157-58837157|C/T|missense_variant	GLYATL2|p.E112K|1|0.5|ENSG00000156689|chr11:58837157-58837157|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	437.6372985839844	2	437.23745	872.460347	-0.46465	-0.00020316	0.037608	1.6444E-05	-0.42705	-0.00018672	437.2374778519871	26.246	1.2122	26.246	25.966	27.179	0					68	23	5	0	0	0	0.14018	1	7775	7775		81.613	3.4637	1	90334000			40306	14055	29652	29888	39240	39240					0.019015056264720442
QEGLSLQV	8	Unmodified	_QEGLSLQV_					0	0	0			REV__ENST00000521293.5_1_8:74529642-74659041:-|nuORF	REV__ENST00000521293.5_1_8:74529642-74659041:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	437.6372985839844	2	437.23745	872.460347	-0.46465	-0.00020316	0.037608	1.6444E-05	-0.42705	-0.00018672	437.2374778519871	26.246	1.2122	26.246	25.966	27.179	0					68	23	5	0	0	0	0.16381	2	7775	7775;7910		81.613	0	1	90334000	+		40307	16337	29653	29889	39241;39242	39241					0.01901505626483413
QEGLSLQV	8	Unmodified	_QEGLSLQV_					0	0	0			REV__ENST00000521293.5_1_8:74529642-74659041:-|nuORF	REV__ENST00000521293.5_1_8:74529642-74659041:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	437.2891845703125	2	437.23745	872.460347	-0.74296	-0.00032485	0.29276	0.00012801	-0.4502	-0.00019684	437.237520910963	25.662	1.2701	26.321	26.144	27.414	0.65992					53	24	3	0	0	0	0.19889	1	8720	8720		67.344	0	1	71994000	+		40308	16337	29653	29889	39243	39243					0.01901505626483413
QEGRFHEV	8	Unmodified	_QEGRFHEV_					0	0	0		ENSG00000204767|ENST00000377365|INSYN2B	ENSG00000204767|ENST00000377365|INSYN2B	ENSG00000204767|ENST00000377365|INSYN2B	MSMS	A375_MHC_IP_R2	2	501.2050476074219	2	501.243598	1000.47264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.396	1	76.137	75.637	76.637	0.74052								0	0	0	0.16876	1	28620	28620		13.508	1.8676	1				40309	9479	29654	29890	39244	39244					-0.027574579104793884
QEGRLQKLL	9	Unmodified	_QEGRLQKLL_					0	0	0		nc|ENSG00000198431|Q16881-2|TXNRD1;nc|ENSG00000198431|Q16881-4|TXNRD1;ENST00000526390.5_1_12:104683270-104742190:+|nuORF;ENST00000524698.5_2_12:104681148-104742190:+|nuORF;ENST00000526950.1_1_12:104703637-104742190:+|nuORF;nc|ENSG00000198431|Q16881-3|TXNRD1;ENST00000526691.5_1_12:104680955-104742190:+|nuORF;nc|ENSG00000198431|Q16881-6|TXNRD1;ENSG00000198431|ENST00000525566|TXNRD1;ENST00000525566.5_2_12:104609571-104742190:+|nuORF	nc|ENSG00000198431|Q16881-2|TXNRD1	nc|ENSG00000198431|Q16881-2|TXNRD1	MULTI-MSMS	A375_MHC_IP_R2	2	362.6205139160156	3	362.220624	1083.64004	-0.51352	-0.00018601	0.093269	3.3784E-05	-0.42025	-0.00015222	362.220479929153	38.551	0.45811	39.325	39.098	39.556	0.77451					18	8	3	0	0	0	0.6343	1	14237	14237		12.873	0	1	2644100			40310	9269	29655	29891	39245	39245					0.10156809634258934
QEGRLQKLL	9	Unmodified	_QEGRLQKLL_					0	0	0		nc|ENSG00000198431|Q16881-2|TXNRD1;nc|ENSG00000198431|Q16881-4|TXNRD1;ENST00000526390.5_1_12:104683270-104742190:+|nuORF;ENST00000524698.5_2_12:104681148-104742190:+|nuORF;ENST00000526950.1_1_12:104703637-104742190:+|nuORF;nc|ENSG00000198431|Q16881-3|TXNRD1;ENST00000526691.5_1_12:104680955-104742190:+|nuORF;nc|ENSG00000198431|Q16881-6|TXNRD1;ENSG00000198431|ENST00000525566|TXNRD1;ENST00000525566.5_2_12:104609571-104742190:+|nuORF	nc|ENSG00000198431|Q16881-2|TXNRD1	nc|ENSG00000198431|Q16881-2|TXNRD1	MULTI-MATCH	A375_MHC_IP_R1	1		3	362.220624	1083.64004	-0.020111	-7.2847E-06	-0.20235	-7.3294E-05	-0.22246	-8.0579E-05	362.554880250997	39.592	0.45368	39.592	39.391	39.845	0	0.13338	-9.3245E-05	NaN	12.873	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3998700			40311	9269	29655	29891							0.10156809634258934
QEGRLQKLL	9	Unmodified	_QEGRLQKLL_					0	0	0		nc|ENSG00000198431|Q16881-2|TXNRD1;nc|ENSG00000198431|Q16881-4|TXNRD1;ENST00000526390.5_1_12:104683270-104742190:+|nuORF;ENST00000524698.5_2_12:104681148-104742190:+|nuORF;ENST00000526950.1_1_12:104703637-104742190:+|nuORF;nc|ENSG00000198431|Q16881-3|TXNRD1;ENST00000526691.5_1_12:104680955-104742190:+|nuORF;nc|ENSG00000198431|Q16881-6|TXNRD1;ENSG00000198431|ENST00000525566|TXNRD1;ENST00000525566.5_2_12:104609571-104742190:+|nuORF	nc|ENSG00000198431|Q16881-2|TXNRD1	nc|ENSG00000198431|Q16881-2|TXNRD1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	362.220624	1083.64004	-0.51352	-0.00018601	0.093269	3.3784E-05	-0.42025	-0.00015222	362.220479929153	38.551	0.45811	39.325	39.098	39.556	0.77451	-0.13338	0.00022799	NaN	12.873	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2644100			40312	9269	29655	29891							0.10156809634258934
QEGVPRPSY	9	Unmodified	_QEGVPRPSY_					0	0	0		nc|ENSG00000138182|Q96Q89-4|KIF20B;KIF20B|p.E1695Gfs*11|1|0.6|ENSG00000138182|chr10:89768376-89768377|-/A|frameshift_variant;nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;KIF20B|p.I1004Rfs*13|1|0.39|ENSG00000138182|chr10:89737851-89737852|AT/-|frameshift_variant	nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-4|KIF20B	MULTI-SECPEP	A375_MHC_IP_R1	1	517.158935546875	2	516.759081	1031.50361	-0.48985	-0.00025314	0.39554	0.0002044	-0.094315	-4.8738E-05	516.7591367192679	31.663	0.81199	31.663	31.109	31.921	0					22	15	2	0	0	0	0.23313	1	10179	10179		57.249	29.62	1	3809100			40313	14633	29656	29892	39246	39246					-0.010883045962373217
QEGVPRPSY	9	Unmodified	_QEGVPRPSY_					0	0	0		nc|ENSG00000138182|Q96Q89-4|KIF20B;KIF20B|p.E1695Gfs*11|1|0.6|ENSG00000138182|chr10:89768376-89768377|-/A|frameshift_variant;nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;KIF20B|p.I1004Rfs*13|1|0.39|ENSG00000138182|chr10:89737851-89737852|AT/-|frameshift_variant	nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-4|KIF20B	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1588134765625	2	516.759081	1031.50361	-0.79347	-0.00041003	0.074938	3.8725E-05	-0.71854	-0.00037131	516.7590433881335	31.008	0.70899	31.726	31.317	32.026	0.71857					21	13	2	0	0	0	0.23313	1	10924	10924		49.527	27.99	1	2681000			40314	14633	29656	29892	39247	39247					-0.010883045962373217
QEGVVPNRF	9	Unmodified	_QEGVVPNRF_					0	0	0		nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1;nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1	nc|ENSG00000108018|Q8WY21-4|SORCS1	nc|ENSG00000108018|Q8WY21-4|SORCS1	MULTI-MSMS	A375_MHC_IP_R1	1	523.6747436523438	2	523.274898	1044.53524	-0.50276	-0.00026308	0.50878	0.00026623	0.006016	3.148E-06	523.2750110077899	43.86	0.61084	43.86	43.502	44.113	0					18	11	2	0	0	0	0.032333	1	15252	15252		72.968	33.011	1	3774100			40315	2778	29657	29893	39248	39248					0.014756881576886371
QEHDITNFY	9	Unmodified	_QEHDITNFY_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;ENSG00000165671|ENST00000439151|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MSMS	A375_MHC_IP_R1	1	584.158935546875	2	583.759278	1165.504	-0.2448	-0.0001429	-0.5514	-0.00032188	-0.79619	-0.00046478	583.7588829010883	55.296	0.45694	55.296	55.025	55.482	0					22	8	3	0	0	0	0.0090323	1	19743	19743		99.799	61.825	1	5918500			40316	6978	29658	29894	39249	39249					-0.07212929667048229
QEHDITNFY	9	Unmodified	_QEHDITNFY_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;ENSG00000165671|ENST00000439151|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MSMS	A375_MHC_IP_R2	2	584.1588134765625	2	583.759278	1165.504	-0.63412	-0.00037017	-0.13363	-7.801E-05	-0.76775	-0.00044818	583.7590320972656	54.589	0.55749	55.339	55.018	55.575	0.75075					23	10	3	0	0	0	0.0090323	1	20588	20588		99.799	61.825	1	7155800			40317	6978	29658	29894	39250	39250					-0.07212929667048229
QEHGLGMAQPA	11	Unmodified	_QEHGLGMAQPA_					0	0	0		nc|ENSG00000198089|A8K8P3-4|SFI1;nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;nc|ENSG00000198089|A8K8P3-5|SFI1;ENST00000382162.7_1_22:32002284-32014401:+|nuORF;ENST00000474741.5_1_22:32009833-32014520:+|nuORF	nc|ENSG00000198089|A8K8P3-4|SFI1	nc|ENSG00000198089|A8K8P3-4|SFI1	MSMS	A375_MHC_IP_R1	1	380.11102294921875	3	380.181841	1137.52369	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.31	1	106.31	105.81	106.81	0								0	0	0	0.16258	1	39025	39025		2.4348	0	1				40318	9228	29659	29895	39251	39251					-0.03956876927918529
QEHIDLGIKY	10	Unmodified	_QEHIDLGIKY_					0	0	0		nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF	nc|ENSG00000142676|P62913-2|RPL11	nc|ENSG00000142676|P62913-2|RPL11	MULTI-MSMS	A375_MHC_IP_R1	1	608.7215576171875	2	608.322045	1214.62954	-0.20558	-0.00012506	-0.037482	-2.2801E-05	-0.24306	-0.00014786	608.3218134527901	56.307	0.4565	56.307	56.041	56.498	0					18	8	3	0	0	0	0.0079374	1	20165	20165		93.938	59.536	1	3224600			40319	5326	29660	29896	39252	39252					0.030807821891812637
QEHIDLGIKY	10	Unmodified	_QEHIDLGIKY_					0	0	0		nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF	nc|ENSG00000142676|P62913-2|RPL11	nc|ENSG00000142676|P62913-2|RPL11	MULTI-SECPEP	A375_MHC_IP_R1	1	406.2837219238281	3	405.883789	1214.62954	-0.21971	-8.9177E-05	0.36327	0.00014744	0.14355	5.8267E-05	405.88389851079586	56.315	0.65705	56.315	55.891	56.548	0					32	12	4	0	0	0	0.02507	1	20150	20150		105.35	74.642	1	9677900			40320	5326	29660	29896	39253	39253					0.030807821891812637
QEHIDLGIKY	10	Unmodified	_QEHIDLGIKY_					0	0	0		nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF	nc|ENSG00000142676|P62913-2|RPL11	nc|ENSG00000142676|P62913-2|RPL11	MULTI-MSMS	A375_MHC_IP_R2	2	608.7210693359375	2	608.322045	1214.62954	-0.50729	-0.0003086	-0.27145	-0.00016513	-0.77874	-0.00047373	608.321847599137	55.551	0.35509	56.301	56.084	56.439	0.75075					15	6	3	0	0	0	0.011657	1	20984	20984		114.5	86.868	1	3794500			40321	5326	29660	29896	39254	39254					0.030807821891812637
QEHIDLGIKY	10	Unmodified	_QEHIDLGIKY_					0	0	0		nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF	nc|ENSG00000142676|P62913-2|RPL11	nc|ENSG00000142676|P62913-2|RPL11	MULTI-SECPEP	A375_MHC_IP_R2	2	406.2837219238281	3	405.883789	1214.62954	-0.062034	-2.5179E-05	-0.20617	-8.3683E-05	-0.26821	-0.00010886	405.88368533587277	55.543	0.60824	56.293	56.034	56.642	0.75075					39	11	6	0	0	0	0.012511	1	20957	20957		118.81	91.725	1	12203000			40322	5326	29660	29896	39255	39255					0.030807821891812637
QEHILRFASW	10	Unmodified	_QEHILRFASW_					0	0	0		nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF	nc|ENSG00000130726|Q13263-2|TRIM28	nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-SECPEP	A375_MHC_IP_R1	1	430.29425048828125	3	429.559528	1285.65676	-0.17318	-7.4393E-05	0.33649	0.00014454	0.16331	7.0151E-05	429.8940535693828	75.938	0.55547	75.938	75.714	76.269	0					14	10	2	0	0	0	0.31583	1	27688	27688		34.79	30.262	1	2630100			40323	4272	29661	29897	39256	39256					0.025353105202157167
QEHILRFASW	10	Unmodified	_QEHILRFASW_					0	0	0		nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF	nc|ENSG00000130726|Q13263-2|TRIM28	nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-MSMS	A375_MHC_IP_R2	2	429.9593200683594	3	429.559528	1285.65676	-0.26568	-0.00011413	0.11808	5.0723E-05	-0.1476	-6.3402E-05	429.5594306990506	75.038	0.55726	75.776	75.416	75.973	0.73751					21	10	3	0	0	0	0.59108	1	28520	28520		18.721	11.112	1	2285400			40324	4272	29661	29897	39257	39257					0.025353105202157167
QEHINIHKL	9	Unmodified	_QEHINIHKL_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;ENST00000415461.2_1_11:70253665-70266006:+|nuORF	nc|ENSG00000085733|Q14247-2|CTTN	nc|ENSG00000085733|Q14247-2|CTTN	MULTI-MSMS	A375_MHC_IP_R1	1	378.2804870605469	3	377.88049	1130.61964	0.20587	7.7793E-05	0.30699	0.00011601	0.51286	0.0001938	377.8806415058464	24.523	0.40182	24.523	24.347	24.749	0					11	7	2	0	0	0	0.60101	1	6990	6990		14.405	5.66	1	8718200			40325	14491	29662	29898	39258	39258					0.05955638974455724
QEHLMLRVGA	10	Unmodified	_QEHLMLRVGA_					0	0	0			REV__ENSG00000168447|ENST00000343070|SCNN1B	REV__ENSG00000168447|ENST00000343070|SCNN1B	MULTI-SECPEP	A375_MHC_IP_R2	2	385.6096496582031	3	385.209731	1152.60736	-0.74606	-0.00028739	0.58926	0.00022699	-0.1568	-6.0402E-05	385.20998785544924	36.848	0.3539	37.619	37.513	37.867	0.7709					11	6	2	0	0	0	0.87163	1	13496	13496		8.4443	1.7211	1	3209000	+		40326	20856	29663	29899	39259	39259					0.037162792397793964
QEHLQLQNL	9	Unmodified	_QEHLQLQNL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	A375_MHC_IP_R1	1	562.1980590820312	2	561.798737	1121.58292	-0.44403	-0.00024946	-1.11	-0.00062357	-1.554	-0.00087303	561.7985582468265	55.402	0.50925	55.402	55.126	55.635	0					17	9	3	0	0	0	0.04447	1	19840	19840		66.457	16.902	1	3002800			40327	5230	29664	29900	39260	39260					0.026993423579142473
QEHLQLQNL	9	Unmodified	_QEHLQLQNL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MATCH	A375_MHC_IP_R2	2		2	561.798737	1121.58292	-0.77596	-0.00043593	-1.8932	-0.0010636	-2.6691	-0.0014995	562.2984301676514	54.656	0.50832	55.407	55.118	55.626	0.75075	0.0024595	-0.00048046	NaN	66.457	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1974800			40328	5230	29664	29900							0.026993423579142473
QEHPIGDKSF	10	Unmodified	_QEHPIGDKSF_					0	0	0		ENSG00000185989|ENST00000334062|RASA3;nc|ENSG00000185989|Q14644-2|RASA3	ENSG00000185989|ENST00000334062|RASA3	ENSG00000185989|ENST00000334062|RASA3	MULTI-MSMS	A375_MHC_IP_R1	1	386.9243469238281	3	386.524372	1156.55129	0.11553	4.4655E-05	-0.012039	-4.6532E-06	0.10349	4.0002E-05	386.5244094316524	24.473	0.6072	24.473	24.245	24.852	0					18	11	2	0	0	0	0.71436	1	6986	6986		5.8681	0.57125	1	9098200			40329	8714	29665	29901	39261	39261					-0.020726503960531772
QEHPIGDKSF	10	Unmodified	_QEHPIGDKSF_					0	0	0		ENSG00000185989|ENST00000334062|RASA3;nc|ENSG00000185989|Q14644-2|RASA3	ENSG00000185989|ENST00000334062|RASA3	ENSG00000185989|ENST00000334062|RASA3	MULTI-SECPEP	A375_MHC_IP_R2	2	386.9241943359375	3	386.524372	1156.55129	-0.3914	-0.00015128	0.073828	2.8536E-05	-0.31757	-0.00012275	386.5243928615913	23.833	0.30676	24.463	24.333	24.64	0.63014					11	5	3	0	0	0	0.91393	1	7752	7752		11.065	5.6626	1	7283100			40330	8714	29665	29901	39262	39262					-0.020726503960531772
QEHPIGDKSF	10	Unmodified	_QEHPIGDKSF_					0	0	0		ENSG00000185989|ENST00000334062|RASA3;nc|ENSG00000185989|Q14644-2|RASA3	ENSG00000185989|ENST00000334062|RASA3	ENSG00000185989|ENST00000334062|RASA3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	386.524372	1156.55129	0.11553	4.4655E-05	-0.012039	-4.6532E-06	0.10349	4.0002E-05	386.5244094316524	24.473	0.6072	24.473	24.245	24.852	0	0.0045495	-4.1125E-05	NaN	5.8681	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9098200			40331	8714	29665	29901							-0.020726503960531772
QEHPSIRTL	9	Unmodified	_QEHPSIRTL_					0	0	0		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5	nc|ENSG00000065150|O00410-2|IPO5	nc|ENSG00000065150|O00410-2|IPO5	MULTI-MSMS	A375_MHC_IP_R2	2	361.2646179199219	3	360.864729	1079.57236	-0.3785	-0.00013659	0.19419	7.0078E-05	-0.18431	-6.6509E-05	360.8647310791852	26.928	0.41087	27.588	27.414	27.825	0.65992					16	7	3	0	0	0	0.34064	1	9189	9189		32.037	25.407	1	3904800			40332	1370	29666	29902	39263	39263					0.03575359703495451
QEHSGIFGF	9	Unmodified	_QEHSGIFGF_					0	0	0		ENST00000486668.5_1_1:228333270-228334576:+|nuORF;ENST00000495999.5_1_1:228333234-228334576:+|nuORF;ENST00000492871.5_1_1:228328955-228334566:+|nuORF;ENST00000485083.5_1_1:228328955-228333375:+|nuORF;ENST00000485838.5_1_1:228328003-228334566:+|nuORF;ENST00000485859.1_1_1:228333213-228333875:+|nuORF;ENST00000462807.5_1_1:228327956-228334566:+|nuORF;ENST00000493138.5_1_1:228328018-228335361:+|nuORF;ENST00000491613.1_1_1:228329334-228333375:+|nuORF;nc|ENSG00000143774|Q16774|GUK1;ENSG00000143774|ENST00000453943|GUK1;nc|ENSG00000143774|Q16774-3|GUK1	ENST00000486668.5_1_1:228333270-228334576:+|nuORF	ENST00000486668.5_1_1:228333270-228334576:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	512.1417846679688	2	511.240524	1020.46649	-0.37837	-0.00019344	-0.20076	-0.00010264	-0.57913	-0.00029607	511.2403504062767	82.832	0.70742	82.832	82.622	83.329	0					31	13	4	0	0	0	0.015701	1	30315	30315		88.954	34.18	1	3897800			40333	5432	29667	29903	39264	39264					-0.04291976141996656
QEHSGIFGF	9	Unmodified	_QEHSGIFGF_					0	0	0		ENST00000486668.5_1_1:228333270-228334576:+|nuORF;ENST00000495999.5_1_1:228333234-228334576:+|nuORF;ENST00000492871.5_1_1:228328955-228334566:+|nuORF;ENST00000485083.5_1_1:228328955-228333375:+|nuORF;ENST00000485838.5_1_1:228328003-228334566:+|nuORF;ENST00000485859.1_1_1:228333213-228333875:+|nuORF;ENST00000462807.5_1_1:228327956-228334566:+|nuORF;ENST00000493138.5_1_1:228328018-228335361:+|nuORF;ENST00000491613.1_1_1:228329334-228333375:+|nuORF;nc|ENSG00000143774|Q16774|GUK1;ENSG00000143774|ENST00000453943|GUK1;nc|ENSG00000143774|Q16774-3|GUK1	ENST00000486668.5_1_1:228333270-228334576:+|nuORF	ENST00000486668.5_1_1:228333270-228334576:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	511.639892578125	2	511.240524	1020.46649	-0.80217	-0.0004101	0.2953	0.00015097	-0.50686	-0.00025913	511.2405334517868	82.036	0.71281	82.779	82.431	83.144	0.74293					27	13	3	0	0	0	0.037185	1	31128	31128		96.285	41.511	1	4135300			40334	5432	29667	29903	39265	39265					-0.04291976141996656
QEIATSHNIVY	11	Unmodified	_QEIATSHNIVY_					0	0	0		nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF;ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	MULTI-SECPEP	A375_MHC_IP_R2	2	638.2213745117188	2	637.822409	1273.63027	-0.66496	-0.00042413	-0.12505	-7.9759E-05	-0.79001	-0.00050389	637.8225811364787	87.206	0.80843	87.939	87.56	88.368	0.733					36	15	4	0	0	0	0.14821	1	33152	33152		67.838	25.883	1	7540100			40335	4918	29668	29904	39266	39266					0.004395768382437382
QEIDEQRTKY	10	Unmodified	_QEIDEQRTKY_					0	0	0		ENSG00000140743|ENST00000268383|CDR2	ENSG00000140743|ENST00000268383|CDR2	ENSG00000140743|ENST00000268383|CDR2	MULTI-SECPEP	A375_MHC_IP_R1	1	437.9518737792969	3	437.217608	1308.63099	-0.2843	-0.0001243	-0.025193	-1.1015E-05	-0.30949	-0.00013531	437.21749912668434	19.495	0.35488	19.495	19.268	19.623	0					10	6	2	0	0	0	0.24721	1	4874	4874		37.251	23.033	1	6961800			40336	5182	29669	29905	39267	39267					-0.010976285127071606
QEIDFLKTL	9	Unmodified	_QEIDFLKTL_					0	0	0		ENSG00000161849|ENST00000257951|KRT84;CON__Q9NSB2;CON__Q6ISB0	ENSG00000161849|ENST00000257951|KRT84	ENSG00000161849|ENST00000257951|KRT84	MULTI-SECPEP	A375_MHC_IP_R2	2	553.6691284179688	2	553.808239	1105.60193	-0.91711	-0.0005079	-0.12203	-6.758E-05	-1.0391	-0.00057548	553.8086183707062	72.429	0.65915	73.164	72.922	73.581	0.73541					19	12	2	0	0	0	0.27114	1	27466	27466		53.404	11.448	1	768890		+	40337	626	29670	29906	39268	39268					0.05334878928965736
QEIDGKSLL	9	Unmodified	_QEIDGKSLL_					0	0	0		ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1;ENSG00000203943|ENST00000394834|SAMD13;nc|ENSG00000203943|Q5VXD3-2|SAMD13;nc|ENSG00000203943|Q5VXD3|SAMD13;nc|ENSG00000203943|Q5VXD3-3|SAMD13;ENST00000506295.1_2_1:84810518-84815454:+|nuORF	ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000203943|Q5VXD3-3|SAMD13	ENSG00000141858|ENST00000533683|SAMD1	MULTI-MSMS	A375_MHC_IP_R1	1	502.1764831542969	2	501.776939	1001.53933	-0.45343	-0.00022752	-0.0080132	-4.0209E-06	-0.46145	-0.00023154	501.7768616288787	53.279	0.91272	53.279	52.897	53.809	0					51	17	4	0	0	0	0.012447	2	18948	18942;18948		93.166	21.244	1	36877000			40338	5274;12854	29671	29907	39269;39270	39270					0.03861732860787015
QEIDGKSLL	9	Unmodified	_QEIDGKSLL_					0	0	0		ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1;ENSG00000203943|ENST00000394834|SAMD13;nc|ENSG00000203943|Q5VXD3-2|SAMD13;nc|ENSG00000203943|Q5VXD3|SAMD13;nc|ENSG00000203943|Q5VXD3-3|SAMD13;ENST00000506295.1_2_1:84810518-84815454:+|nuORF	ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000203943|Q5VXD3-3|SAMD13	ENSG00000141858|ENST00000533683|SAMD1	MULTI-MSMS	A375_MHC_IP_R2	2	501.6967468261719	2	501.776939	1001.53933	-1.0563	-0.00053004	0.31166	0.00015638	-0.74467	-0.00037366	501.7770555720431	52.507	1.0118	53.259	52.78	53.791	0.75225					50	19	4	0	0	0	0.0092511	3	19750	19750;19754;19796		117.76	36.148	1	49858000			40339	5274;12854	29671	29907	39271;39272;39273	39271					0.03861732860787015
QEIDILEDW	9	Unmodified	_QEIDILEDW_					0	0	0		ENSG00000174744|ENST00000359957|BRMS1;ENST00000530238.5_1_11:66105966-66109705:-|nuORF	ENSG00000174744|ENST00000359957|BRMS1	ENSG00000174744|ENST00000359957|BRMS1	MULTI-MSMS	A375_MHC_IP_R2	2	581.1760864257812	2	580.777136	1159.53972	-0.35759	-0.00020768	-1.1167	-0.00064853	-1.4743	-0.00085621	580.7764134204267	129	0.20291	129.24	129.11	129.31	0.23946					6	3	2	0	0	0	0.46465	1	50718	50718		21.537	7.6309	1	4444200			40340	7897	29672	29908	39274	39274					-0.033668922100332566
QEIDILEDW	9	Unmodified	_QEIDILEDW_					0	0	0		ENSG00000174744|ENST00000359957|BRMS1;ENST00000530238.5_1_11:66105966-66109705:-|nuORF	ENSG00000174744|ENST00000359957|BRMS1	ENSG00000174744|ENST00000359957|BRMS1	MULTI-MATCH	A375_MHC_IP_R1	1		2	580.777136	1159.53972	-0.31336	-0.00018199	-0.27351	-0.00015885	-0.58688	-0.00034084	580.7771920605283	129.19	0.15303	129.19	129.09	129.25	0	-0.021335	0.00074305	NaN	21.537	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1392300			40341	7897	29672	29908							-0.033668922100332566
QEIDLTGVKL	10	Unmodified	_QEIDLTGVKL_					0	0	0		ENSG00000066583|ENST00000173527|ISOC1	ENSG00000066583|ENST00000173527|ISOC1	ENSG00000066583|ENST00000173527|ISOC1	MULTI-SECPEP	A375_MHC_IP_R2	2	558.0383911132812	2	558.318971	1114.62339	-0.60926	-0.00034016	-0.34648	-0.00019344	-0.95574	-0.00053361	558.3191659818494	84.622	0.45563	85.358	85.222	85.677	0.73601					12	8	2	0	0	0	0.54012	1	32193	32193		26.021	16.638	1	1134600			40342	1415	29673	29909	39275	39275					0.0706626395767671
QEIDRGQYI	9	Unmodified	_QEIDRGQYI_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant;HMCN1|p.P2051Lfs*3|1|0.45|ENSG00000143341|chr1:186039851-186039861|CTGTTTCTAGT/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	A375_MHC_IP_R1	1	561.682861328125	2	561.28292	1120.55129	-0.20079	-0.0001127	0.0034044	1.9109E-06	-0.19738	-0.00011079	561.2828067822617	39.13	0.356	39.13	38.933	39.289	0					11	6	2	0	0	0	0.056914	1	13372	13372		61.602	28.816	1	2532700			40343	5371	29674	29910	39276	39276					-0.004166503960504997
QEIDRGQYI	9	Unmodified	_QEIDRGQYI_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant;HMCN1|p.P2051Lfs*3|1|0.45|ENSG00000143341|chr1:186039851-186039861|CTGTTTCTAGT/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	A375_MHC_IP_R1	1	561.197021484375	2	561.28292	1120.55129	-0.32733	-0.00018373	1.9091	0.0010716	1.5818	0.00088782	561.7853029886431	110.77	0.56158	110.77	110.44	111	0					13	10	2	0	0	0	0.17328	1	40542	40542		39.957	3.4511	1	1098000			40344	5371	29674	29910	39277	39277					-0.004166503960504997
QEIEDKMKGF	10	Oxidation (M)	_QEIEDKM(Oxidation (M))KGF_		QEIEDKM(1)KGF		QEIEDKM(65)KGF	0	0	1		nc|nan|Q96EF9|ZHX1-C8orf76;ENSG00000189376|ENST00000276704|C8orf76	nc|nan|Q96EF9|ZHX1-C8orf76	nc|nan|Q96EF9|ZHX1-C8orf76	MULTI-MSMS	A375_MHC_IP_R1	1	414.6005859375	3	414.200789	1239.58054	0.29135	0.00012068	-0.65219	-0.00027014	-0.36084	-0.00014946	414.2004989371788	23.195	0.81303	23.195	22.924	23.737	0					28	15	4	0	0	0	0.095173	1	6307	6307		64.692	46.828	1	16278000			40345	8983	29675	29911	39278	39278		413			-0.02966874162075328
QEIEDKMKGF	10	Oxidation (M)	_QEIEDKM(Oxidation (M))KGF_		QEIEDKM(1)KGF		QEIEDKM(110)KGF	0	0	1		nc|nan|Q96EF9|ZHX1-C8orf76;ENSG00000189376|ENST00000276704|C8orf76	nc|nan|Q96EF9|ZHX1-C8orf76	nc|nan|Q96EF9|ZHX1-C8orf76	MSMS	A375_MHC_IP_R1	1	621.1964111328125	2	620.797546	1239.58054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.228	1	23.228	22.728	23.728	0								0	0	0	2.0625E-06	1	6342	6342		107.1	67.15	1				40346	8983	29675	29911	39279	39279		413			-0.02966874162075328
QEIEDKMKGF	10	Unmodified	_QEIEDKMKGF_					0	0	0		nc|nan|Q96EF9|ZHX1-C8orf76;ENSG00000189376|ENST00000276704|C8orf76	nc|nan|Q96EF9|ZHX1-C8orf76	nc|nan|Q96EF9|ZHX1-C8orf76	MULTI-SECPEP	A375_MHC_IP_R1	1	409.6038513183594	3	408.869151	1223.58562	0.18548	7.5836E-05	-0.0049512	-2.0244E-06	0.18053	7.3812E-05	408.86908806111114	38.755	0.50812	38.755	38.475	38.983	0					15	9	2	0	0	0	0.27758	1	13184	13184		39.923	19.512	1	14382000			40347	8983	29675	29912	39280	39280					-0.01722570299466497
QEIEDKMKGF	10	Unmodified	_QEIEDKMKGF_					0	0	0		nc|nan|Q96EF9|ZHX1-C8orf76;ENSG00000189376|ENST00000276704|C8orf76	nc|nan|Q96EF9|ZHX1-C8orf76	nc|nan|Q96EF9|ZHX1-C8orf76	MULTI-MSMS	A375_MHC_IP_R2	2	409.2690734863281	3	408.869151	1223.58562	-0.23779	-9.7225E-05	-0.24187	-9.8895E-05	-0.47966	-0.00019612	408.8692347363207	38.018	0.66527	38.792	38.585	39.25	0.77451					41	12	4	0	0	0	0.0036544	1	13952	13952		76.416	44.78	1	12619000			40348	8983	29675	29912	39281	39281					-0.01722570299466497
QEIEEIRQKY	10	Unmodified	_QEIEEIRQKY_					0	0	0		ENST00000372801.5_1_20:43681806-43703814:+|nuORF;ENSG00000101109|ENST00000372806|STK4	ENST00000372801.5_1_20:43681806-43703814:+|nuORF	ENST00000372801.5_1_20:43681806-43703814:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	446.30126953125	3	445.90162	1334.68303	-0.39423	-0.00017579	-0.51684	-0.00023046	-0.91108	-0.00040625	445.9015672625272	30.21	0.80733	30.21	29.999	30.806	0					29	15	3	0	0	0	0.27942	1	9582	9582		41.347	20.766	1	9413500			40349	2251	29676	29913	39282	39282					0.029075349010327045
QEIEEIRQKY	10	Unmodified	_QEIEEIRQKY_					0	0	0		ENST00000372801.5_1_20:43681806-43703814:+|nuORF;ENSG00000101109|ENST00000372806|STK4	ENST00000372801.5_1_20:43681806-43703814:+|nuORF	ENST00000372801.5_1_20:43681806-43703814:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	446.30108642578125	3	445.90162	1334.68303	-1.001	-0.00044635	0.54528	0.00024314	-0.45573	-0.00020321	445.9018147229825	29.57	0.40251	30.269	30.083	30.485	0.69872					20	7	3	0	0	0	0.27942	1	10323	10323		41.347	21.36	1	12212000			40350	2251	29676	29913	39283	39283					0.029075349010327045
QEIEKDIHDF	10	Unmodified	_QEIEKDIHDF_					0	0	0		ENSG00000213793|ENST00000638862|ZNF888;ENSG00000167562|ENST00000391785|ZNF701;ENSG00000182986|ENST00000682928|ZNF320;ENSG00000258405|ENST00000421239|ZNF578;nc|ENSG00000167562|Q9NV72|ZNF701	ENSG00000213793|ENST00000638862|ZNF888;nc|ENSG00000167562|Q9NV72|ZNF701	ENSG00000213793|ENST00000638862|ZNF888	MULTI-MSMS	A375_MHC_IP_R1	1	637.7059326171875	2	637.306592	1272.59863	-0.69928	-0.00044566	-0.22137	-0.00014108	-0.92066	-0.00058674	637.3064222876131	40.858	0.30282	40.858	40.66	40.963	0					10	5	2	0	0	0	0.011374	1	14079	14079		121.5	75.804	1	3027500			40351	9583;14747	29677	29914	39284	39284					-0.02676415915743746
QEIEKDIHDF	10	Unmodified	_QEIEKDIHDF_					0	0	0		ENSG00000213793|ENST00000638862|ZNF888;ENSG00000167562|ENST00000391785|ZNF701;ENSG00000182986|ENST00000682928|ZNF320;ENSG00000258405|ENST00000421239|ZNF578;nc|ENSG00000167562|Q9NV72|ZNF701	ENSG00000213793|ENST00000638862|ZNF888;nc|ENSG00000167562|Q9NV72|ZNF701	ENSG00000213793|ENST00000638862|ZNF888	MULTI-SECPEP	A375_MHC_IP_R1	1	425.6064453125	3	425.20682	1272.59863	-0.14493	-6.1625E-05	-0.64641	-0.00027486	-0.79134	-0.00033648	425.2065857481132	40.816	0.70745	40.816	40.609	41.317	0					20	13	3	0	0	0	0.72578	1	14080	14080		29.281	5.317	1	2182100			40352	9583;14747	29677	29914	39285	39285					-0.02676415915743746
QEIEKDIHDF	10	Unmodified	_QEIEKDIHDF_					0	0	0		ENSG00000213793|ENST00000638862|ZNF888;ENSG00000167562|ENST00000391785|ZNF701;ENSG00000182986|ENST00000682928|ZNF320;ENSG00000258405|ENST00000421239|ZNF578;nc|ENSG00000167562|Q9NV72|ZNF701	ENSG00000213793|ENST00000638862|ZNF888;nc|ENSG00000167562|Q9NV72|ZNF701	ENSG00000213793|ENST00000638862|ZNF888	MULTI-MSMS	A375_MHC_IP_R2	2	637.7063598632812	2	637.306592	1272.59863	-0.83004	-0.00052899	0.13785	8.7851E-05	-0.6922	-0.00044114	637.3066128998615	40.13	0.30433	40.905	40.727	41.031	0.77451					13	5	3	0	0	0	0.084058	1	14887	14887		67.081	36.444	1	3120300			40353	9583;14747	29677	29914	39286	39286					-0.02676415915743746
QEIENAINEY	10	Unmodified	_QEIENAINEY_					0	0	0		nc|ENSG00000114541|Q9Y2L6-2|FRMD4B;ENSG00000114541|ENST00000398540|FRMD4B	nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	MULTI-SECPEP	A375_MHC_IP_R1	1	612.1829833984375	2	611.78295	1221.55135	-0.42049	-0.00025725	0.10331	6.3201E-05	-0.31718	-0.00019404	611.7831209674757	65.096	0.61085	65.096	64.8	65.411	0					29	11	3	0	0	0	0.02839	1	23547	23547		147.24	89.992	1	4853200			40354	3228	29678	29915	39287	39287					-0.05056695186704019
QEIENAINEY	10	Unmodified	_QEIENAINEY_					0	0	0		nc|ENSG00000114541|Q9Y2L6-2|FRMD4B;ENSG00000114541|ENST00000398540|FRMD4B	nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	MULTI-MSMS	A375_MHC_IP_R2	2	612.182373046875	2	611.78295	1221.55135	-0.46565	-0.00028488	0.057938	3.5445E-05	-0.40771	-0.00024943	611.7828284981312	64.534	0.55947	65.274	65.004	65.564	0.74022					27	10	3	0	0	0	2.5819E-05	1	24439	24439		155.95	76.357	1	4952200			40355	3228	29678	29915	39288	39288					-0.05056695186704019
QEIEVRPGI	9	Unmodified	_QEIEVRPGI_					0	0	0		ENSG00000130741|ENST00000253039|EIF2S3;EIF2S3|p.S302F|1|0.7|ENSG00000130741|chrX:24068001-24068001|C/T|missense_variant	ENSG00000130741|ENST00000253039|EIF2S3	ENSG00000130741|ENST00000253039|EIF2S3	MULTI-MSMS	A375_MHC_IP_R1	1	520.6554565429688	2	520.790381	1039.56621	-0.40143	-0.00020906	-0.0046891	-2.442E-06	-0.40612	-0.0002115	520.7903036157757	50.044	0.46136	50.044	49.743	50.204	0					13	8	2	0	0	0	0.67332	1	17667	17667		9.3831	0	1	2086800			40356	4276	29679	29916	39289	39289					0.048008414719333814
QEIEVRPGI	9	Unmodified	_QEIEVRPGI_					0	0	0		ENSG00000130741|ENST00000253039|EIF2S3;EIF2S3|p.S302F|1|0.7|ENSG00000130741|chrX:24068001-24068001|C/T|missense_variant	ENSG00000130741|ENST00000253039|EIF2S3	ENSG00000130741|ENST00000253039|EIF2S3	MULTI-SECPEP	A375_MHC_IP_R2	2	521.1896362304688	2	520.790381	1039.56621	-0.86524	-0.00045061	-0.15023	-7.8236E-05	-1.0155	-0.00052885	520.7901823187947	49.254	0.45492	50.012	49.792	50.247	0.75737					14	8	3	0	0	0	0.41434	1	18524	18524		26.268	0	1	2660600			40357	4276	29679	29916	39290	39290					0.048008414719333814
QEIFEVNNL	9	Unmodified	_QEIFEVNNL_					0	0	0		ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENSG00000213983|ENST00000397120|AP1G2;ENST00000554892.1_1_14:24028960-24029314:-|nuORF;ENST00000557391.1_1_14:24028960-24029655:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	553.6691284179688	2	553.279846	1104.54514	-0.87948	-0.0004866	0.2915	0.00016128	-0.58798	-0.00032532	553.2799945687206	72.666	1.1688	73.401	72.872	74.041	0.73541					26	22	2	0	0	0	0.60917	1	27466	27466		25.399	25.399	1	3146500			40358	9594	29680	29917	39291	39291					-0.0029516862757645868
QEIGGPRSY	9	Unmodified	_QEIGGPRSY_					0	0	0		ENSG00000102393|ENST00000218516|GLA;ENST00000466414.1_1_X:100652799-100653600:-|nuORF	ENSG00000102393|ENST00000218516|GLA	ENSG00000102393|ENST00000218516|GLA	MULTI-MSMS	A375_MHC_IP_R1	1	503.689697265625	2	503.751256	1005.48796	-0.69784	-0.00035154	0.040364	2.0334E-05	-0.65748	-0.00033121	503.7512642411204	26.279	0.86017	26.279	26.068	26.928	0					44	16	4	0	0	0	0.2415	1	7902	7902		34.932	8.5908	1	28442000			40359	2378	29681	29918	39292	39292					-0.01456591113299055
QEIGGPRSY	9	Unmodified	_QEIGGPRSY_					0	0	0		ENSG00000102393|ENST00000218516|GLA;ENST00000466414.1_1_X:100652799-100653600:-|nuORF	ENSG00000102393|ENST00000218516|GLA	ENSG00000102393|ENST00000218516|GLA	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1507568359375	2	503.751256	1005.48796	-1.1157	-0.00056201	0.30893	0.00015563	-0.80673	-0.00040639	503.75141269306437	25.726	0.71333	26.386	26.194	26.907	0.65992					33	13	3	0	0	0	0.044425	1	8624	8624		78.06	25.792	1	29567000			40360	2378	29681	29918	39293	39293					-0.01456591113299055
QEIGVLDQREY	11	Unmodified	_QEIGVLDQREY_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30;DHX30|p.S1163Qfs*25|1|0.5|ENSG00000132153|chr3:47850015-47850016|-/C|frameshift_variant	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	A375_MHC_IP_R1	1	675.7379150390625	2	675.338424	1348.66229	-0.69086	-0.00046656	-0.27812	-0.00018782	-0.96898	-0.00065439	675.3382722788489	58.898	0.40693	58.898	58.736	59.143	0					13	7	2	0	0	0	0.00033207	1	21182	21182		118.81	63.578	1	2880400			40361	4375	29682	29919	39294	39294					0.0019094452136414475
QEIGVLDQREY	11	Unmodified	_QEIGVLDQREY_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30;DHX30|p.S1163Qfs*25|1|0.5|ENSG00000132153|chr3:47850015-47850016|-/C|frameshift_variant	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-SECPEP	A375_MHC_IP_R2	2	675.7379760742188	2	675.338424	1348.66229	-0.98679	-0.00066642	0.069406	4.6872E-05	-0.91738	-0.00061954	675.3385402715747	58.295	0.45768	59.044	58.779	59.237	0.74894					17	8	3	0	0	0	0.022338	1	22031	22031		112.95	65.214	1	2958900			40362	4375	29682	29919	39295	39295					0.0019094452136414475
QEIKITSKF	9	Unmodified	_QEIKITSKF_					0	0	0		ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	MULTI-MSMS	A375_MHC_IP_R2	2	547.7161865234375	2	547.316232	1092.61791	-1.0222	-0.00055945	0.58172	0.00031838	-0.44045	-0.00024107	547.3163909046565	38.939	0.30684	39.714	39.556	39.863	0.77451					7	5	2	0	0	0	0.55471	1	14397	14397		17.113	4.8722	1	2382300			40363	2912	29683	29920	39296	39296					0.0753058516584133
QEIKITSKF	9	Unmodified	_QEIKITSKF_					0	0	0		ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	MULTI-SECPEP	A375_MHC_IP_R2	2	365.61309814453125	3	365.213246	1092.61791	-0.19625	-7.1673E-05	0.29238	0.00010678	0.096126	3.5107E-05	365.2133012848032	38.957	0.51245	39.732	39.453	39.965	0.77451					23	9	4	0	0	0	0.49205	1	14348	14348		26.021	11.064	1	13691000			40364	2912	29683	29920	39297	39297					0.0753058516584133
QEIKNSLF	8	Unmodified	_QEIKNSLF_					0	0	0		ENSG00000103888|ENST00000394685|CEMIP;nc|ENSG00000103888|Q8WUJ3-2|CEMIP	ENSG00000103888|ENST00000394685|CEMIP	ENSG00000103888|ENST00000394685|CEMIP	MULTI-MSMS	A375_MHC_IP_R1	1	490.1661071777344	2	489.766374	977.518196	0.034235	1.6767E-05	-0.66936	-0.00032783	-0.63513	-0.00031106	489.76632903096925	45.396	0.85937	45.396	44.98	45.839	0					35	16	3	0	0	0	0.1677	1	15888	15888		74.929	0	1	7412300			40365	2473	29684	29921	39298	39298					0.02853767551891906
QEIKNSLF	8	Unmodified	_QEIKNSLF_					0	0	0		ENSG00000103888|ENST00000394685|CEMIP;nc|ENSG00000103888|Q8WUJ3-2|CEMIP	ENSG00000103888|ENST00000394685|CEMIP	ENSG00000103888|ENST00000394685|CEMIP	MULTI-SECPEP	A375_MHC_IP_R2	2	490.1659851074219	2	489.766374	977.518196	-0.61873	-0.00030303	-0.46365	-0.00022708	-1.0824	-0.00053011	489.7664881609352	44.545	0.81567	45.314	44.934	45.75	0.7691					26	15	2	0	0	0	0.23546	1	16632	16632		85.272	0	1	6208200			40366	2473	29684	29921	39299	39299					0.02853767551891906
QEILDKWL	8	Unmodified	_QEILDKWL_					0	0	0		DNAH7|p.E979K|2|0.4|ENSG00000118997|chr2:195957404-195957404|C/T|missense_variant	DNAH7|p.E979K|2|0.4|ENSG00000118997|chr2:195957404-195957404|C/T|missense_variant	DNAH7|p.E979K|2|0.4|ENSG00000118997|chr2:195957404-195957404|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1898803710938	2	522.78985	1043.56515	-0.40618	-0.00021235	-0.25165	-0.00013156	-0.65783	-0.00034391	522.789711589594	71.013	0.92155	71.013	70.392	71.313	0					26	15	2	0	0	0	0.8957	1	25749	25749		6.7232	0	1	6574000			40367	772	29685	29922	39300	39300					0.04510627103036313
QEILKDLKKL	10	Unmodified	_QEILKDLKKL_					0	0	0			REV__ENSG00000135249|ENST00000257700|RINT1	REV__ENSG00000135249|ENST00000257700|RINT1	MULTI-SECPEP	A375_MHC_IP_R2	2	614.7108154296875	2	614.387188	1226.75982	-0.35915	-0.00022066	0.97782	0.00060076	0.61867	0.00038011	614.3889385690544	94.504	0.25386	95.249	95.02	95.274	0.74474					6	4	2	0	0	0	0.93799	1	35883	35883		6.7232	0	1	1062300	+		40368	18835	29686	29923	39301	39301					0.15551378188183662
QEILSKLL	8	Unmodified	_QEILSKLL_					0	0	0			REV__nc|ENSG00000131059|Q9BQP9-2|BPIFA3	REV__nc|ENSG00000131059|Q9BQP9-2|BPIFA3	MULTI-SECPEP	A375_MHC_IP_R1	1	472.930419921875	2	472.294768	942.574983	-0.43569	-0.00020578	-4.0216	-0.0018994	-4.4573	-0.0021051	472.2915323081449	77.411	1.4766	77.411	76.622	78.099	0					36	28	2	0	0	0	0.90057	1	28054	28054		12.241	0	1	1858200	+		40369	18584	29687	29924	39302	39302					0.10139815108436778
QEIPGEFIY	9	Unmodified	_QEIPGEFIY_					0	0	0		ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	MULTI-MSMS	A375_MHC_IP_R1	1	548.239501953125	2	548.27149	1094.52843	-0.46696	-0.00025602	0.31211	0.00017112	-0.15485	-8.4902E-05	548.2715582919947	104.95	1.0139	104.95	104.44	105.45	0					63	19	4	0	0	0	0.015356	1	38515	38515		89.401	51.427	1	15917000			40370	6849	29688	29925	39303	39303					-0.015056695135172049
QEIPGEFIY	9	Unmodified	_QEIPGEFIY_					0	0	0		ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	MULTI-MSMS	A375_MHC_IP_R2	2	548.6715087890625	2	548.27149	1094.52843	-0.73402	-0.00040244	0.051131	2.8033E-05	-0.68289	-0.00037441	548.2714564151165	104.25	1.1686	105.01	104.5	105.67	0.76308					77	22	5	0	0	0	0.029064	2	39352	39321;39352		75.761	37.787	1	14814000			40371	6849	29688	29925	39304;39305	39305					-0.015056695135172049
QEIPLLLGRPS	11	Unmodified	_QEIPLLLGRPS_					0	0	0		nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	MULTI-SECPEP	A375_MHC_IP_R1	1	408.9399108886719	3	408.243317	1221.70812	-0.43277	-0.00017667	1.2628	0.00051554	0.83005	0.00033886	408.24370116038915	23.762	0.25386	23.762	23.635	23.889	0					8	4	2	0	0	0	0.99778	1	6576	6576		0.29564	0	1	1577600			40372	2935	29689	29926	39306	39306					0.10613634494279722
QEIPVNVRF	9	Unmodified	_QEIPVNVRF_					0	0	0		ENSG00000133313|ENST00000324262|CNDP2	ENSG00000133313|ENST00000324262|CNDP2	ENSG00000133313|ENST00000324262|CNDP2	MULTI-MSMS	A375_MHC_IP_R1	1	552.4342041015625	2	551.306198	1100.59784	-0.56509	-0.00031154	0.070382	3.8802E-05	-0.49471	-0.00027274	551.3062615149574	75.738	1.4146	75.738	75.413	76.827	0					75	27	4	0	0	0	0.16945	1	27642	27642		36.127	5.4905	1	87999000			40373	4502	29690	29927	39307	39307					0.051568342258860866
QEIPVNVRF	9	Unmodified	_QEIPVNVRF_					0	0	0		ENSG00000133313|ENST00000324262|CNDP2	ENSG00000133313|ENST00000324262|CNDP2	ENSG00000133313|ENST00000324262|CNDP2	MULTI-SECPEP	A375_MHC_IP_R2	2	551.7057495117188	2	551.306198	1100.59784	-0.83677	-0.00046132	0.18732	0.00010327	-0.64945	-0.00035805	551.3063263511207	74.952	1.6768	75.689	75.163	76.84	0.73752					92	32	4	0	0	0	0.010998	1	28395	28395		139.14	50.235	1	65179000			40374	4502	29690	29927	39308	39308					0.051568342258860866
QEIRSLFEQY	10	Unmodified	_QEIRSLFEQY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4;ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173933|ENST00000310092|RBM4;ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	A375_MHC_IP_R1	1	657.2296142578125	2	656.830234	1311.64592	-0.5461	-0.0003587	-0.1475	-9.6884E-05	-0.69361	-0.00045558	656.8301320414245	81.072	0.81259	81.072	80.642	81.455	0					40	15	4	0	0	0	7.0711E-16	1	29590	29590		232.63	136.27	1	7726300			40375	7843;7840	29691	29928	39309	39309					0.002558633553007894
QEIRSLFEQY	10	Unmodified	_QEIRSLFEQY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4;ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173933|ENST00000310092|RBM4;ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	A375_MHC_IP_R2	2	657.22998046875	2	656.830234	1311.64592	-0.92755	-0.00060924	-0.1545	-0.00010148	-1.082	-0.00071072	656.8306566826133	80.318	1.7245	81.063	80.759	82.484	0.74473					60	33	4	0	0	0	2.0644E-05	1	30451	30451		187.14	100.81	1	11704000			40376	7843;7840	29691	29928	39310	39310					0.002558633553007894
QEISEIEKRY	10	Unmodified	_QEISEIEKRY_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	MULTI-MSMS	A375_MHC_IP_R1	1	432.62603759765625	3	432.226103	1293.65648	-0.23868	-0.00010317	-0.34199	-0.00014782	-0.58067	-0.00025098	432.2260015963385	32.101	0.41196	32.101	31.87	32.282	0					17	7	3	0	0	0	0.10407	1	10342	10342		62.78	35.692	1	9131200			40377	6733	29692	29929	39311	39311					0.0213984600970889
QEISEIEKRY	10	Unmodified	_QEISEIEKRY_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	MULTI-MSMS	A375_MHC_IP_R2	2	432.62591552734375	3	432.226103	1293.65648	-0.2662	-0.00011506	0.084159	3.6376E-05	-0.18204	-7.8683E-05	432.2261168625216	31.429	0.61336	32.148	31.923	32.536	0.71857					14	11	2	0	0	0	0.63381	1	11118	11118		18.34	12.472	1	8111100			40378	6733	29692	29929	39312	39312					0.0213984600970889
QEISQELLY	9	Unmodified	_QEISQELLY_					0	0	0		ENSG00000134698|ENST00000373210|AGO4	ENSG00000134698|ENST00000373210|AGO4	ENSG00000134698|ENST00000373210|AGO4	MULTI-MSMS	A375_MHC_IP_R2	2	1122.63623046875	1	1122.56773	1121.56045	-0.088952	-9.9855E-05	-0.32577	-0.0003657	-0.41473	-0.00046556	1122.567041241053	65.895	0.35707	66.633	66.425	66.782	0.73811					9	6	2	0	0	0	0.11715	1	24986	24986		47.594	3.822	1	1286800			40379	4597	29693	29930	39313	39313					0.004536981696446674
QEISQELLY	9	Unmodified	_QEISQELLY_					0	0	0		ENSG00000134698|ENST00000373210|AGO4	ENSG00000134698|ENST00000373210|AGO4	ENSG00000134698|ENST00000373210|AGO4	MULTI-SECPEP	A375_MHC_IP_R2	2	562.187255859375	2	561.787504	1121.56045	-0.79252	-0.00044523	-0.042605	-2.3935E-05	-0.83513	-0.00046916	561.7873657388578	65.871	0.60971	66.609	66.324	66.934	0.73812					24	11	3	0	0	0	0.22619	1	24981	24981		55.503	3.8729	1	3655000			40380	4597	29693	29930	39314	39314					0.004536981696446674
QEISQELLY	9	Unmodified	_QEISQELLY_					0	0	0		ENSG00000134698|ENST00000373210|AGO4	ENSG00000134698|ENST00000373210|AGO4	ENSG00000134698|ENST00000373210|AGO4	MULTI-MATCH	A375_MHC_IP_R1	1		1	1122.56773	1121.56045	-0.15137	-0.00016992	0.18794	0.00021098	0.036573	4.1055E-05	1122.5675389734781	66.606	0.35677	66.606	66.428	66.785	0	-0.013516	0.00036036	NaN	47.594	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1481700			40381	4597	29693	29930							0.004536981696446674
QEISSLVKY	9	Unmodified	_QEISSLVKY_					0	0	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	A375_MHC_IP_R1	1	534.193359375	2	533.792589	1065.57063	-0.73116	-0.00039029	1.0441	0.00055734	0.31295	0.00016705	533.7932795999908	58.809	0.66176	58.809	58.43	59.092	0					23	12	3	0	0	0	0.27114	1	21131	21131		32.037	7.0465	1	5080100			40382	5800	29694	29931	39315	39315					0.04046305894848956
QEISSLVKY	9	Unmodified	_QEISSLVKY_					0	0	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	A375_MHC_IP_R2	2	534.192138671875	2	533.792589	1065.57063	-1.0237	-0.00054646	0.4441	0.00023706	-0.57963	-0.0003094	533.7927428457475	58.036	0.70858	58.785	58.323	59.032	0.74894					20	13	2	0	0	0	0.09145	1	21934	21934		53.317	25.688	1	3549800			40383	5800	29694	29931	39316	39316					0.04046305894848956
QEIVALLNAF	10	Unmodified	_QEIVALLNAF_					0	0	0		ENSG00000086619|ENST00000354619|ERO1B	ENSG00000086619|ENST00000354619|ERO1B	ENSG00000086619|ENST00000354619|ERO1B	MULTI-SECPEP	A375_MHC_IP_R2	2	372.6181335449219	3	373.213246	1116.61791	0.49844	0.00018602	-0.44315	-0.00016539	0.05529	2.0635E-05	373.2130219733073	78.974	0.4058	79.718	79.54	79.946	0.74474					11	7	2	0	0	0	0.94516	1	30041	30041		1.7423	0.089654	1	1153600			40384	1841	29695	29932	39317	39317					0.06426585165831966
QEIWEDFSMS	10	Unmodified	_QEIWEDFSMS_					0	0	0		ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	MSMS	A375_MHC_IP_R1	1	636.226318359375	2	636.266078	1270.5176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.77	1	100.77	100.27	101.27	0								0	0	0	0.15265	1	37040	37040		12.241	2.8575	1				40385	4039	29696	29933	39318	39318					-0.10683439950116735
QEIYGGSDSRF	11	Unmodified	_QEIYGGSDSRF_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1;nc|ENSG00000115524|O75533-2|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	A375_MHC_IP_R1	1	630.1883544921875	2	629.788566	1257.56258	-0.42523	-0.0002678	0.18175	0.00011447	-0.24347	-0.00015334	629.7886911479103	43.173	1.169	43.173	42.79	43.959	0					67	22	5	0	0	0	4.5925E-08	1	14937	14937		196.06	103.57	1	69533000			40386	3317	29697	29934	39319	39319					-0.055898730925719065
QEIYGGSDSRF	11	Unmodified	_QEIYGGSDSRF_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1;nc|ENSG00000115524|O75533-2|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	A375_MHC_IP_R2	2	630.1884155273438	2	629.788566	1257.56258	-0.74855	-0.00047143	-0.11897	-7.4928E-05	-0.86753	-0.00054636	629.788449536694	42.462	1.3208	43.234	42.86	44.181	0.7724					68	25	5	0	0	0	9.5128E-15	1	15742	15742		227.14	134.65	1	59061000			40387	3317	29697	29934	39320	39320					-0.055898730925719065
QEKAKSYC	8	Unmodified	_QEKAKSYC_					0	0	0			REV__ENSG00000171612|ENST00000302692|SLC25A33	REV__ENSG00000171612|ENST00000302692|SLC25A33	MSMS	A375_MHC_IP_R1	1	478.66937255859375	2	478.728935	955.443317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.826	1	27.826	27.326	28.326	0								0	0	0	0.16876	1	8495	8495		18.135	3.5533	1		+		40388	21083	29698	29935	39321	39321					-0.03618738250986553
QEKAVFQFY	9	Unmodified	_QEKAVFQFY_					0	0	0		ENSG00000158716|ENST00000368107|DUSP23	ENSG00000158716|ENST00000368107|DUSP23	ENSG00000158716|ENST00000368107|DUSP23	MULTI-MSMS	A375_MHC_IP_R1	1	580.6597900390625	2	580.292756	1158.57096	-0.11615	-6.7399E-05	-0.34739	-0.00020159	-0.46353	-0.00026898	580.2925021823598	78.056	0.45918	78.056	77.742	78.201	0					18	8	3	0	0	0	0.084766	2	28471	28471;28520		68.081	19.735	1	2979700			40389	6326	29699	29936	39322;39323	39322					-0.0019827438529773644
QEKAVFQFY	9	Unmodified	_QEKAVFQFY_					0	0	0		ENSG00000158716|ENST00000368107|DUSP23	ENSG00000158716|ENST00000368107|DUSP23	ENSG00000158716|ENST00000368107|DUSP23	MULTI-SECPEP	A375_MHC_IP_R2	2	580.6920776367188	2	580.292756	1158.57096	-0.30015	-0.00017418	-0.43642	-0.00025325	-0.73657	-0.00042743	580.2923612201031	77.262	0.45741	78.005	77.707	78.165	0.74293					17	8	3	0	0	0	0.074405	1	29334	29334		78.149	34.291	1	3274300			40390	6326	29699	29936	39324	39324					-0.0019827438529773644
QEKDCSSSRPS	11	Unmodified	_QEKDCSSSRPS_					0	0	0		ENST00000549824.1_1_12:53142603-53142978:+|nuORF	ENST00000549824.1_1_12:53142603-53142978:+|nuORF	ENST00000549824.1_1_12:53142603-53142978:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	408.9399108886719	3	408.515548	1222.52481	-0.43843	-0.00017911	0.99753	0.00040751	0.5591	0.0002284	408.51581663259645	23.593	0.25454	23.593	23.483	23.737	0					8	4	2	0	0	0	0.99778	1	6576	6576		0.29564	0	1	3317000			40391	13363	29700	29937	39325	39325					-0.07754707349704404
QEKDLKELKKR	11	Unmodified	_QEKDLKELKKR_					0	0	0			REV__CFAP74|p.E711K|1|0.53|ENSG00000142609|chr1:1955736-1955736|C/T|missense_variant	REV__CFAP74|p.E711K|1|0.53|ENSG00000142609|chr1:1955736-1955736|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	708.3211669921875	2	707.922458	1413.83036	-0.54302	-0.00038441	-0.3967	-0.00028083	-0.93971	-0.00066524	707.9218977890714	148.7	1.2028	148.72	148.11	149.31	0.018707					53	26	4	0	0	0	0.73924	1	57755	57755		0	0	1	181060	+		40392	15651	29701	29938	39326	39326					0.14000051505809097
QEKDLKELKKR	11	Unmodified	_QEKDLKELKKR_					0	0	0			REV__CFAP74|p.E711K|1|0.53|ENSG00000142609|chr1:1955736-1955736|C/T|missense_variant	REV__CFAP74|p.E711K|1|0.53|ENSG00000142609|chr1:1955736-1955736|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	707.922458	1413.83036	-0.95102	-0.00067325	-0.53059	-0.00037561	-1.4816	-0.0010489	707.921776589885	148.78	0.94514	148.78	148.31	149.26	0	0.031724	-0.00010167	NaN	0	35	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161010	+		40393	15651	29701	29938							0.14000051505809097
QEKDLKELKKR	11	Unmodified	_QEKDLKELKKR_					0	0	0			REV__CFAP74|p.E711K|1|0.53|ENSG00000142609|chr1:1955736-1955736|C/T|missense_variant	REV__CFAP74|p.E711K|1|0.53|ENSG00000142609|chr1:1955736-1955736|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	707.922458	1413.83036	-0.54302	-0.00038441	-0.3967	-0.00028083	-0.93971	-0.00066524	707.9218977890714	148.7	1.2028	148.72	148.11	149.31	0.018707	-0.031724	8.7895E-05	NaN	0	53	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181060	+		40394	15651	29701	29938							0.14000051505809097
QEKDVFERY	9	Unmodified	_QEKDVFERY_					0	0	0		ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-2|CUL3;nc|ENSG00000036257|Q13618-3|CUL3	ENSG00000036257|ENST00000264414|CUL3	ENSG00000036257|ENST00000264414|CUL3	MULTI-MSMS	A375_MHC_IP_R1	1	405.5997314453125	3	405.199777	1212.5775	-0.36414	-0.00014755	0.41984	0.00017012	0.055701	2.257E-05	405.1998863231546	31.709	0.4082	31.709	31.565	31.973	0					12	7	2	0	0	0	0.1915	1	10202	10202		30.431	17.559	1	2530500			40395	1136	29702	29939	39327	39327					-0.020283812245679655
QEKDVFERY	9	Unmodified	_QEKDVFERY_					0	0	0		ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-2|CUL3;nc|ENSG00000036257|Q13618-3|CUL3	ENSG00000036257|ENST00000264414|CUL3	ENSG00000036257|ENST00000264414|CUL3	MULTI-SECPEP	A375_MHC_IP_R2	2	405.59979248046875	3	405.199777	1212.5775	-0.019035	-7.713E-06	0.32023	0.00012976	0.3012	0.00012205	405.2000048871135	31.026	0.35566	31.744	31.567	31.923	0.71857					11	6	2	0	0	0	0.59614	1	10962	10962		12.856	3.3258	1	3407700			40396	1136	29702	29939	39328	39328					-0.020283812245679655
QEKENCSFQKN	11	Unmodified	_QEKENCSFQKN_					0	0	0		ITGA9|p.G853E|1|0.27|ENSG00000144668|chr3:37777408-37777408|G/A|missense_variant	ITGA9|p.G853E|1|0.27|ENSG00000144668|chr3:37777408-37777408|G/A|missense_variant	ITGA9|p.G853E|1|0.27|ENSG00000144668|chr3:37777408-37777408|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	452.6176452636719	3	452.206714	1353.59831	-0.11607	-5.2489E-05	-2.0692	-0.00093569	-2.1852	-0.00098818	452.54095337269126	28.692	0.25399	28.692	28.541	28.795	0					7	4	2	0	0	0	0.99819	1	8859	8859		3.5927	0.96144	1	731760			40397	14179	29703	29940	39329	39329					-0.06434158907222809
QEKEWRSKVEE	11	Unmodified	_QEKEWRSKVEE_					0	0	0			REV__ENSG00000180332|ENST00000379108|KCTD4	REV__ENSG00000180332|ENST00000379108|KCTD4	MULTI-MSMS	A375_MHC_IP_R1	1	483.64373779296875	3	483.244045	1446.71031	-0.63299	-0.00030589	-0.11266	-5.4444E-05	-0.74565	-0.00036033	483.243968520509	41.311	0.86273	41.311	40.863	41.725	0					37	16	3	0	0	0	0.73239	1	14204	14204		6.6235	6.6235	1	9824400	+		40398	21605	29704	29941	39330	39330					0.004820184414256801
QEKEWRSKVEE	11	Unmodified	_QEKEWRSKVEE_					0	0	0			REV__ENSG00000180332|ENST00000379108|KCTD4	REV__ENSG00000180332|ENST00000379108|KCTD4	MULTI-MSMS	A375_MHC_IP_R2	2	483.64373779296875	3	483.244045	1446.71031	-0.70649	-0.00034141	0.23661	0.00011434	-0.46988	-0.00022707	483.24403788971887	40.615	0.81312	41.389	40.93	41.743	0.77451					39	15	4	0	0	0	0.73502	1	14985	14985		4.1166	0.27072	1	9935400	+		40399	21605	29704	29941	39331	39331					0.004820184414256801
QEKGNREDA	9	Unmodified	_QEKGNREDA_					0	0	0		ENST00000262644.8_1_8:57872809-57872962:-|nuORF	ENST00000262644.8_1_8:57872809-57872962:-|nuORF	ENST00000262644.8_1_8:57872809-57872962:-|nuORF	MSMS	A375_MHC_IP_R2	2	523.6748046875	2	523.746702	1045.47885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.046	1	43.819	43.319	44.319	0.7724								0	0	0	0.15069	1	16027	16027		20.454	0	1				40400	10311	29705	29942	39332	39332					-0.04206984469624331
QEKKKIFV	8	Unmodified	_QEKKKIFV_					0	0	0		nc|ENSG00000134755|Q02487-2|DSC2;ENSG00000134755|ENST00000280904|DSC2;DSC2|p.F112I|1|0.06|ENSG00000134755|chr18:31092121-31092121|A/T|missense_variant	nc|ENSG00000134755|Q02487-2|DSC2	nc|ENSG00000134755|Q02487-2|DSC2	MULTI-SECPEP	A375_MHC_IP_R2	2	510.1815490722656	2	510.316035	1018.61752	-0.79428	-0.00040533	-0.15609	-7.9656E-05	-0.95037	-0.00048499	510.31571820378326	39.953	0.40633	40.728	40.473	40.879	0.77451					13	7	3	0	0	0	0.91495	1	14706	14706		7.9102	3.5809	1	1842400			40401	4602	29706	29943	39333	39333					0.10895210236662933
QEKQKKKELKR	11	Unmodified	_QEKQKKKELKR_					0	0	0			REV__nc|ENSG00000292372|Q9NQA3|WASH6P	REV__nc|ENSG00000292372|Q9NQA3|WASH6P	MULTI-MSMS	A375_MHC_IP_R1	1	482.0311279296875	3	481.631575	1441.8729	-0.72592	-0.00034963	0.10387	5.0025E-05	-0.62206	-0.0002996	481.63158166815396	149.04	1.6073	149.04	148.21	149.82	0					87	39	3	0	0	0	0.73926	1	57025	57025		0.073264	0	1	241640	+		40402	21694	29707	29944	39334	39334					0.16963446634076718
QEKQKKKELKR	11	Unmodified	_QEKQKKKELKR_					0	0	0			REV__nc|ENSG00000292372|Q9NQA3|WASH6P	REV__nc|ENSG00000292372|Q9NQA3|WASH6P	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	481.631575	1441.8729	-0.38114	-0.00018357	-0.16128	-7.7679E-05	-0.54242	-0.00026125	481.6314064181661	149.29	1.5704	149.31	148.32	149.89	0.01825	0.13407	-0.00019584	NaN	0.073264	76	50	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147040	+		40403	21694	29707	29944							0.16963446634076718
QEKTEGWLTE	10	Unmodified	_QEKTEGWLTE_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	A375_MHC_IP_R2	2	610.1710815429688	2	610.793318	1219.57208	-0.52585	-0.00032119	-0.30803	-0.00018814	-0.83388	-0.00050933	610.7931781717119	32.35	0.30531	33.087	32.96	33.265	0.73692					8	5	2	0	0	0	0.87163	1	11451	11451		19.257	0	1	2666000			40404	8235	29708	29945	39335	39335					-0.028921048070742472
QEKTEGWLTE	10	Unmodified	_QEKTEGWLTE_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MATCH	A375_MHC_IP_R1	1		2	610.793318	1219.57208	-0.46022	-0.0002811	0.5269	0.00032183	0.066684	4.073E-05	610.7934336956265	33.087	0.2528	33.087	32.887	33.14	0	0.00037712	0.00075622	NaN	19.257	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2083900			40405	8235	29708	29945							-0.028921048070742472
QELDDVQAI	9	Unmodified	_QELDDVQAI_					0	0	0			REV__ENSG00000163312|ENST00000295488|HELQ	REV__ENSG00000163312|ENST00000295488|HELQ	MULTI-SECPEP	A375_MHC_IP_R2	2	516.1381225585938	2	515.756204	1029.49785	-0.79984	-0.00041252	0.10735	5.5368E-05	-0.69249	-0.00035715	515.7561637987011	31.179	0.40704	31.897	31.567	31.974	0.71857					9	7	2	0	0	0	0.69504	1	10940	10940		18.135	0	1	1303800	+		40406	20350	29709	29946	39336	39336					-0.01571447898572842
QELDEMRER	9	Unmodified	_QELDEMRER_					0	0	0		tr|U7T3C2|U7T3C2_FUSNUEndonucleaseMutS2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutS2PE=3SV=1	tr|U7T3C2|U7T3C2_FUSNUEndonucleaseMutS2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutS2PE=3SV=1	tr|U7T3C2|U7T3C2_FUSNUEndonucleaseMutS2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutS2PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	403.28741455078125	3	402.524155	1204.55064	0.089081	3.5857E-05	1.4525	0.00058465	1.5415	0.00062051	402.8602969615409	27.412	0.25466	28.09	27.895	28.149	0.67857					6	4	2	0	0	0	0.74875	1	9317	9317		10.8	0	1	1001200			40407	29963	29710	29947	39337	39337					-0.043458131074203266
QELDNPGAKRI	11	Unmodified	_QELDNPGAKRI_					0	0	0		nc|ENSG00000196419|P12956-2|XRCC6;ENSG00000196419|ENST00000360079|XRCC6	nc|ENSG00000196419|P12956-2|XRCC6	nc|ENSG00000196419|P12956-2|XRCC6	MULTI-MSMS	A375_MHC_IP_R1	1	414.2980651855469	3	414.226326	1239.65715	0.14167	5.8685E-05	0.89034	0.0003688	1.032	0.00042749	414.2271865236189	24.28	0.45468	24.28	24.143	24.597	0					18	8	4	0	0	0	0.16153	1	6851	6851		59.496	24.416	1	12183000			40408	9038	29711	29948	39338	39338					0.04690685449418197
QELEFVTY	8	Unmodified	_QELEFVTY_					0	0	0			REV__nc|ENSG00000129646|Q9H0J4-3|QRICH2	REV__nc|ENSG00000129646|Q9H0J4-3|QRICH2	MULTI-MSMS	A375_MHC_IP_R1	1	1030.3741455078125	1	1028.4935	1027.48623	0.023153	2.3813E-05	-0.6601	-0.00067891	-0.63695	-0.0006551	1028.4931970640876	94.879	0.86654	94.879	94.497	95.364	0					37	16	3	0	0	0	0.75805	1	34834	34834		18.135	1.1927	1	11222000	+		40409	18501	29712	29949	39339	39339					-0.02641644921891384
QELENVKTL	9	Unmodified	_QELENVKTL_					0	0	0		ENST00000477983.1_1_7:156526850-156555826:-|nuORF;ENST00000434503.5_1_7:156480878-156685794:-|nuORF;ENSG00000105983|ENST00000353442|LMBR1;nc|ENSG00000105983|Q8WVP7-3|LMBR1	ENST00000477983.1_1_7:156526850-156555826:-|nuORF	ENST00000477983.1_1_7:156526850-156555826:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	537.6953125	2	537.295496	1072.57644	-0.93836	-0.00050418	0.5694	0.00030593	-0.36896	-0.00019824	537.295642473097	41.7	0.41093	41.7	41.521	41.932	0					12	7	2	0	0	0	0.10495	1	14445	14445		65.474	13.844	1	2786400			40410	2656	29713	29950	39340	39340					0.04305404406522939
QELENVKTL	9	Unmodified	_QELENVKTL_					0	0	0		ENST00000477983.1_1_7:156526850-156555826:-|nuORF;ENST00000434503.5_1_7:156480878-156685794:-|nuORF;ENSG00000105983|ENST00000353442|LMBR1;nc|ENSG00000105983|Q8WVP7-3|LMBR1	ENST00000477983.1_1_7:156526850-156555826:-|nuORF	ENST00000477983.1_1_7:156526850-156555826:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	537.69482421875	2	537.295496	1072.57644	-1.1159	-0.00059959	0.028747	1.5446E-05	-1.0872	-0.00058415	537.2955911781253	40.976	0.35522	41.751	41.54	41.895	0.77451					13	6	3	0	0	0	0.40377	1	15213	15213		28.495	13.246	1	2985300			40411	2656	29713	29950	39341	39341					0.04305404406522939
QELEREITF	9	Unmodified	_QELEREITF_					0	0	0		ENSG00000156162|ENST00000414645|DPY19L4;DPY19L4|p.I297Rfs*11|1|0.03|ENSG00000156162|chr8:94765200-94765242|AATCTACATATTTTCCCTCTTTCTGGGATATTTACTACAGTTT/-|frameshift_variant	ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	MULTI-SECPEP	A375_MHC_IP_R2	2	583.1983642578125	2	582.798403	1163.58225	-0.50233	-0.00029276	-1.2272	-0.00071522	-1.7295	-0.001008	582.797065843622	65.318	0.50732	66.056	65.867	66.375	0.73812					13	9	2	0	0	0	0.048303	1	24771	24771		74.2	37.693	1	1556600			40412	795	29714	29951	39342	39342					0.007005029181755162
QELGHDGSW	9	Unmodified	_QELGHDGSW_					0	0	0			REV__ENST00000380762.4_1_X:11129527-11130147:+|nuORF	REV__ENST00000380762.4_1_X:11129527-11130147:+|nuORF	MSMS	A375_MHC_IP_R2	2	514.6868896484375	2	514.725238	1027.43592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.927	1	28.605	28.105	29.105	0.67857								0	0	0	0.15486	1	9598	9598		11.64	0	1		+		40413	24222	29715	29952	39343	39343					-0.0766975452704628
QELHAQLKQF	10	Unmodified	_QELHAQLKQF_					0	0	0			REV__ENSG00000146904|ENST00000275815|EPHA1	REV__ENSG00000146904|ENST00000275815|EPHA1	MULTI-MSMS	A375_MHC_IP_R1	1	414.9595031738281	3	414.559417	1240.65642	0.19891	8.2461E-05	-0.054494	-2.2591E-05	0.14442	5.987E-05	414.55934353562577	19.497	0.4072	19.497	19.368	19.776	0					18	7	4	0	0	0	0.56082	1	4853	4853		23.801	8.8439	1	10723000	+		40414	19557	29716	29953	39344	39344					0.04571890800343681
QELHLSEEF	9	Unmodified	_QELHLSEEF_					0	0	0			REV__nc|ENSG00000166348|Q70EL1-6|USP54	REV__nc|ENSG00000166348|Q70EL1-6|USP54	MULTI-MSMS	A375_MHC_IP_R2	2	566.687255859375	2	566.269478	1130.5244	-0.57835	-0.0003275	-2.4425	-0.0013831	-3.0209	-0.0017106	566.2696476505938	40.74	0.55994	41.515	41.234	41.794	0.77451					31	10	4	0	0	0	0.43185	1	15018	15018		23.148	2.7339	1	23244000	+		40415	20672	29717	29954	39345	39345					-0.03563759007238332
QELIGKKEY	9	Unmodified	_QELIGKKEY_					0	0	0		ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	MULTI-SECPEP	A375_MHC_IP_R1	1	554.7054443359375	2	554.305864	1106.59717	-0.65458	-0.00036284	-0.31288	-0.00017343	-0.96747	-0.00053627	554.3056141441992	24.622	0.30288	24.622	24.498	24.801	0					8	5	2	0	0	0	0.73008	1	7069	7069		12.241	1.4167	1	4337200			40416	4196	29718	29955	39346	39346					0.04813994786195508
QELIGKKEY	9	Unmodified	_QELIGKKEY_					0	0	0		ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	MULTI-MSMS	A375_MHC_IP_R2	2	370.2730407714844	3	369.873001	1106.59717	0.067219	2.4863E-05	0.074553	2.7575E-05	0.14177	5.2438E-05	369.872973486246	23.982	0.30713	24.612	24.435	24.742	0.63015					15	5	5	0	0	0	0.25114	1	7812	7812		34.222	17.656	1	9862300			40417	4196	29718	29955	39347	39347					0.04813994786195508
QELIGKKEY	9	Unmodified	_QELIGKKEY_					0	0	0		ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	MULTI-MATCH	A375_MHC_IP_R2	2		2	554.305864	1106.59717	-1.0198	-0.00056526	0.0752	4.1684E-05	-0.94456	-0.00052357	554.3059052981436	23.965	0.20587	24.595	24.485	24.691	0.63014	-0.013572	9.6111E-05	NaN	12.241	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3208600			40418	4196	29718	29955							0.04813994786195508
QELKDKTQEL	10	Unmodified	_QELKDKTQEL_					0	0	0			REV__ENST00000416077.1_1_6:51274881-51275238:-|nuORF	REV__ENST00000416077.1_1_6:51274881-51275238:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	410.9352111816406	3	411.22247	1230.64558	-0.20315	-8.3538E-05	-1.0203	-0.00041958	-1.2235	-0.00050311	411.5563477541239	23.601	0.35596	23.601	23.432	23.787	0					14	6	3	0	0	0	0.91516	1	6445	6445		17.863	6.2318	1	2617800	+		40419	19538	29719	29956	39348	39348					0.03948443635431431
QELKDKTQEL	10	Unmodified	_QELKDKTQEL_					0	0	0			REV__ENST00000416077.1_1_6:51274881-51275238:-|nuORF	REV__ENST00000416077.1_1_6:51274881-51275238:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	411.22247	1230.64558	-0.31285	-0.00012865	-0.6436	-0.00026466	-0.95645	-0.00039331	411.22241917561513	23.158	0.35631	23.788	23.572	23.928	0.63014	0.093422	0.00029831	NaN	17.863	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3284000	+		40420	19538	29719	29956							0.03948443635431431
QELLAEHY	8	Unmodified	_QELLAEHY_					0	0	0		ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	MULTI-MSMS	A375_MHC_IP_R2	2	502.14788818359375	2	501.748182	1001.48181	-0.61722	-0.00030969	-0.065385	-3.2807E-05	-0.68261	-0.0003425	501.7481764594801	45.649	0.4521	46.415	46.201	46.654	0.76519					17	8	3	0	0	0	0.69583	1	17105	17105		36.044	11.37	1	2348400			40421	4518	29720	29957	39349	39349					-0.018871093448183274
QELLDQEQL	9	Unmodified	_QELLDQEQL_					0	0	0		ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	MSMS	A375_MHC_IP_R1	1	558.2080078125	2	558.282586	1114.55062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.558	1	99.558	99.058	100.06	0								0	0	0	0.14677	1	36575	36575		26.884	0	1				40422	10039	29721	29958	39350	39350					-0.0020748983574776503
QELLMQNQ	8	Unmodified	_QELLMQNQ_					0	0	0			REV__CCDC88C|p.P1706Sfs*54|1|0.26|ENSG00000015133|chr14:91273596-91273597|-/A|frameshift_variant	REV__CCDC88C|p.P1706Sfs*54|1|0.26|ENSG00000015133|chr14:91273596-91273597|-/A|frameshift_variant	MSMS	A375_MHC_IP_R1	1	502.1484069824219	2	502.247492	1002.48043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.509	1	46.509	46.009	47.009	0								0	0	0	0.16876	1	16322	16322		32.305	0.18852	1		+		40423	15599	29722	29959	39351	39351					-0.020710667052185272
QELLNDYRYRS	11	Unmodified	_QELLNDYRYRS_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-SECPEP	A375_MHC_IP_R1	1	729.2619018554688	2	728.862597	1455.71064	-0.61971	-0.00045169	-0.23356	-0.00017023	-0.85328	-0.00062192	728.8623591855383	58.843	0.61143	58.843	58.582	59.194	0					32	11	4	0	0	0	0.83878	1	21135	21135		40.239	18.702	1	10222000			40424	5294	29723	29960	39352	39352					0.0010143816127765604
QELLNDYRYRS	11	Unmodified	_QELLNDYRYRS_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	A375_MHC_IP_R2	2	729.7638549804688	2	728.862597	1455.71064	-1.0971	-0.00079963	-0.17204	-0.0001254	-1.2691	-0.00092503	729.3640180203539	58.26	0.55907	59.009	58.779	59.338	0.74895					30	10	4	0	0	0	0.7039	1	22014	22014		15.248	3.0078	1	9479000			40425	5294	29723	29960	39353	39353					0.0010143816127765604
QELLQTQDF	9	Unmodified	_QELLQTQDF_					0	0	0		ENSG00000110047|ENST00000320631|EHD1;ENST00000484846.1_1_11:64621807-64623066:-|nuORF	ENSG00000110047|ENST00000320631|EHD1	ENSG00000110047|ENST00000320631|EHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	561.6954956054688	2	561.277303	1120.54005	-0.66768	-0.00037476	-0.3663	-0.0002056	-1.034	-0.00058035	561.2773357944919	84.506	0.71301	84.506	84.191	84.904	0					27	13	3	0	0	0	0.49205	1	30985	30985		34.402	19.996	1	2692100			40426	2911	29724	29961	39354	39354					-0.015394724901852896
QELLQTQDF	9	Unmodified	_QELLQTQDF_					0	0	0		ENSG00000110047|ENST00000320631|EHD1;ENST00000484846.1_1_11:64621807-64623066:-|nuORF	ENSG00000110047|ENST00000320631|EHD1	ENSG00000110047|ENST00000320631|EHD1	MULTI-SECPEP	A375_MHC_IP_R2	2	561.6774291992188	2	561.277303	1120.54005	-0.5455	-0.00030618	-0.16332	-9.1671E-05	-0.70882	-0.00039785	561.2774072210449	83.875	0.51212	84.615	84.356	84.868	0.73962					16	9	2	0	0	0	0.022401	1	31873	31873		79.596	41.421	1	2116000			40427	2911	29724	29961	39355	39355					-0.015394724901852896
QELMHFEW	8	Unmodified	_QELMHFEW_					0	0	0			REV__ENSG00000205078|ENST00000378644|SYCE1L	REV__ENSG00000205078|ENST00000378644|SYCE1L	MULTI-MSMS	A375_MHC_IP_R2	2	560.6488647460938	2	560.250034	1118.48552	-0.59311	-0.00033229	0.39101	0.00021907	-0.20209	-0.00011322	560.2503040341352	104.18	0.71374	104.95	104.6	105.31	0.76308					25	13	3	0	0	0	0.73946	1	39429	39429		23.148	1.6114	1	1349000	+		40428	22556	29725	29962	39356	39356					-0.06898762842592987
QELMHFEW	8	Unmodified	_QELMHFEW_					0	0	0			REV__ENSG00000205078|ENST00000378644|SYCE1L	REV__ENSG00000205078|ENST00000378644|SYCE1L	MULTI-MATCH	A375_MHC_IP_R1	1		2	560.250034	1118.48552	-0.4174	-0.00023385	1.4742	0.00082592	1.0568	0.00059207	560.2507902069457	104.83	0.81075	104.83	104.49	105.3	0	-0.06066	0.00035456	NaN	23.148	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1776900	+		40429	22556	29725	29962							-0.06898762842592987
QELNDRFANY	10	Unmodified	_QELNDRFANY_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R1	1	635.696044921875	2	635.296559	1268.57856	-0.18413	-0.00011698	-0.36527	-0.00023206	-0.5494	-0.00034903	635.2963033028576	48.974	0.65685	48.974	48.679	49.336	0					20	12	3	0	0	0	2.711E-05	1	17288	17288		158.08	118.13	1	3754300			40430	1093;7932	29726	29963	39357	39357					-0.04498166855637464
QELNDRFANY	10	Unmodified	_QELNDRFANY_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R2	2	635.6959228515625	2	635.296559	1268.57856	-0.74372	-0.00047248	0.35801	0.00022745	-0.38571	-0.00024504	635.2965649901713	48.323	0.45323	49.08	48.829	49.282	0.75737					21	8	4	0	0	0	3.2397E-05	1	18143	18143		166.77	126.82	1	3107900			40431	1093;7932	29726	29963	39358	39358					-0.04498166855637464
QELNEEMMDEY	11	Unmodified	_QELNEEMMDEY_					0	0	0			REV__ENSG00000004939|ENST00000262418|SLC4A1	REV__ENSG00000004939|ENST00000262418|SLC4A1	MSMS	A375_MHC_IP_R2	2	715.7737426757812	2	715.77615	1429.53775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.389	1	70.124	69.624	70.624	0.73421								0	0	0	0.16249	1	26295	26295		5.7319	0.43497	1		+		40432	16105	29727	29964	39359	39359					-0.1598405707245547
QELNKILRSW	10	Unmodified	_QELNKILRSW_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-MSMS	A375_MHC_IP_R2	2	429.9783630371094	3	429.5787	1285.71427	-0.24199	-0.00010395	-0.42764	-0.0001837	-0.66963	-0.00028766	429.57846878281543	67.139	0.35374	67.875	67.698	68.052	0.73631					8	6	2	0	0	0	0.66324	1	25465	25465		16.137	7.6929	1	2195900			40433	3732	29728	29965	39360	39360					0.08284152725786953
QELNKILRSW	10	Unmodified	_QELNKILRSW_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-MATCH	A375_MHC_IP_R1	1		3	429.5787	1285.71427	-0.55455	-0.00023822	0.24196	0.00010394	-0.31259	-0.00013428	429.57871997097277	68.083	0.70754	68.083	67.654	68.361	0	0.10363	0.00064104	NaN	16.137	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1917200			40434	3732	29728	29965							0.08284152725786953
QELPDVTEEA	10	Unmodified	_QELPDVTEEA_					0	0	0		nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1	nc|ENSG00000116127|Q8TCU4-3|ALMS1	nc|ENSG00000116127|Q8TCU4-3|ALMS1	MULTI-MSMS	A375_MHC_IP_R2	2	565.6795654296875	2	565.764226	1129.5139	-0.54135	-0.00030627	-1.2211	-0.00069086	-1.7625	-0.00099714	565.7636809114039	44.996	0.66174	45.765	45.39	46.052	0.76909					17	12	2	0	0	0	0.6502	1	16905	16905		17.113	3.605	1	1631300			40435	3371	29729	29966	39361	39361					-0.045677864522986056
QELPDVTEEA	10	Unmodified	_QELPDVTEEA_					0	0	0		nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1	nc|ENSG00000116127|Q8TCU4-3|ALMS1	nc|ENSG00000116127|Q8TCU4-3|ALMS1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	565.764226	1129.5139	-0.54135	-0.00030627	-1.2211	-0.00069086	-1.7625	-0.00099714	565.7636809114039	44.996	0.66174	45.765	45.39	46.052	0.76909	-0.0061733	-0.00031769	NaN	17.113	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1631300			40436	3371	29729	29966							-0.045677864522986056
QELPFRKNEM	10	Unmodified	_QELPFRKNEM_					0	0	0		nc|ENSG00000197168|Q6P3R8|NEK5;ENSG00000197168|ENST00000684899|NEK5	nc|ENSG00000197168|Q6P3R8|NEK5	nc|ENSG00000197168|Q6P3R8|NEK5	MULTI-MSMS	A375_MHC_IP_R1	1	431.9432373046875	3	431.220295	1290.63906	0.014534	6.2675E-06	0.97111	0.00041876	0.98565	0.00042503	431.220286322775	20.938	1.1204	20.938	20.384	21.505	0					44	21	3	0	0	0	0.71946	1	5587	5587		3.5871	0	1	2281800			40437	9125	29730	29967	39362	39362					0.0053622720304247196
QELPGLSHQY	10	Unmodified	_QELPGLSHQY_					0	0	0		ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENSG00000100823|ENST00000216714|APEX1	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	586.6909790039062	2	586.290745	1170.56694	-0.18788	-0.00011015	0.40399	0.00023686	0.21611	0.0001267	586.2909281624807	51.143	0.61033	51.143	50.814	51.424	0					25	11	3	0	0	0	0.02701	1	18125	18125		128.57	72.396	1	11094000			40438	2224	29731	29968	39363	39363					-0.011523638789867618
QELPGLSHQY	10	Unmodified	_QELPGLSHQY_					0	0	0		ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENSG00000100823|ENST00000216714|APEX1	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	586.6909790039062	2	586.290745	1170.56694	-0.6892	-0.00040407	0.6047	0.00035453	-0.084499	-4.9541E-05	586.2910371982432	50.476	0.65892	51.23	50.854	51.513	0.75406					24	12	3	0	0	0	0.021392	1	18951	18951		84.522	36.774	1	8855600			40439	2224	29731	29968	39364	39364					-0.011523638789867618
QELPGLSHQYW	11	Unmodified	_QELPGLSHQYW_					0	0	0		ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENSG00000100823|ENST00000216714|APEX1	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	MSMS	A375_MHC_IP_R2	2	679.2340087890625	2	679.330402	1356.64625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.503	1	84.243	83.743	84.743	0.73962								0	0	0	0.096852	1	31738	31738		36.506	3.7205	1				40440	2224	29732	29969	39365	39365					-0.017807169248499122
QELPIPSKL	9	Unmodified	_QELPIPSKL_					0	0	0		nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1;nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF	nc|ENSG00000109046|Q9Y6I7-2|WSB1	nc|ENSG00000109046|Q9Y6I7-2|WSB1	MSMS	A375_MHC_IP_R2	2	512.8102416992188	2	512.8055	1023.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.682	1	74.418	73.918	74.918	0.73541								0	0	0	0.052388	1	27967	27967		53.317	20.531	1				40441	2849	29733	29970	39366	39366					0.08559200137142398
QELPLFFTFL	10	Unmodified	_QELPLFFTFL_					0	0	0		ABCA3|p.P72L|1|0.16|ENSG00000167972|chr16:2326114-2326114|G/A|missense_variant	ABCA3|p.P72L|1|0.16|ENSG00000167972|chr16:2326114-2326114|G/A|missense_variant	ABCA3|p.P72L|1|0.16|ENSG00000167972|chr16:2326114-2326114|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	418.9631042480469	3	418.897147	1253.66961	-0.41728	-0.0001748	1.6842	0.00070549	1.2669	0.00053069	418.897708492104	22.877	0.35741	23.507	23.368	23.726	0.63014					9	6	2	0	0	0	0.70651	1	7315	7315		5.4027	0	1	1785400			40442	4	29734	29971	39367	39367					0.05292328859763984
QELQEINRVY	10	Unmodified	_QELQEINRVY_					0	0	0		nc|ENSG00000182718|P07355-2|ANXA2;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000182718|P07355-2|ANXA2	MULTI-MSMS	A375_MHC_IP_R1	1	646.7352905273438	2	646.335684	1290.65681	-0.22226	-0.00014365	-0.12982	-8.3905E-05	-0.35207	-0.00022756	646.3356204409986	51.803	1.0162	51.803	51.525	52.541	0					56	19	5	0	0	0	2.8869E-05	1	18357	18357		197.81	120.98	1	63647000			40443	8430;14909	29735	29972	39368	39368					0.023112657295769168
QELQEINRVY	10	Unmodified	_QELQEINRVY_					0	0	0		nc|ENSG00000182718|P07355-2|ANXA2;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000182718|P07355-2|ANXA2	MULTI-MSMS	A375_MHC_IP_R2	2	647.237060546875	2	646.335684	1290.65681	-0.81342	-0.00052574	-0.056984	-3.6831E-05	-0.87041	-0.00056258	646.3356548887577	51.187	0.70761	51.939	51.613	52.321	0.75227					47	13	5	0	0	0	0.0065506	1	19218	19218		122.18	70.549	1	71768000			40444	8430;14909	29735	29972	39369	39369					0.023112657295769168
QELQEIRKY	9	Unmodified	_QELQEIRKY_					0	0	0		nc|ENSG00000133059|Q6XUX3-3|DSTYK;nc|ENSG00000133059|Q6XUX3-2|DSTYK;ENSG00000133059|ENST00000367162|DSTYK	nc|ENSG00000133059|Q6XUX3-3|DSTYK	nc|ENSG00000133059|Q6XUX3-3|DSTYK	MULTI-SECPEP	A375_MHC_IP_R2	2	403.28741455078125	3	402.887422	1205.64044	0.052827	2.1283E-05	-0.38416	-0.00015477	-0.33133	-0.00013349	402.88733820391417	27.292	0.45872	27.971	27.741	28.2	0.67857					13	8	2	0	0	0	0.04395	1	9317	9317		65.474	29.347	1	5763300			40445	4479	29736	29973	39370	39370					0.04584184563486815
QELQRHRQE	9	Unmodified	_QELQRHRQE_					0	0	0		ENSG00000107816|ENST00000454422|LZTS2	ENSG00000107816|ENST00000454422|LZTS2	ENSG00000107816|ENST00000454422|LZTS2	MSMS	A375_MHC_IP_R2	2	612.4728393554688	2	612.315617	1222.61668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.673	1	83.416	82.916	83.916	0.74293								0	0	0	0.15486	1	31407	31407		9.3831	1.2276	1				40446	2761	29737	29974	39371	39371					0.014277638496423606
QELSGQGWTY	10	Unmodified	_QELSGQGWTY_					0	0	0		ENSG00000237649|ENST00000428849|KIFC1	ENSG00000237649|ENST00000428849|KIFC1	ENSG00000237649|ENST00000428849|KIFC1	MULTI-MSMS	A375_MHC_IP_R1	1	585.1666259765625	2	584.767103	1167.51965	-0.25313	-0.00014802	-0.58217	-0.00034044	-0.83531	-0.00048846	584.7669984927454	74.099	0.91229	74.099	73.589	74.502	0					35	17	3	0	0	0	0.0018419	1	26969	26969		140.63	102.46	1	3730800			40447	9758	29738	29975	39372	39372					-0.057406431499885
QELSGQGWTY	10	Unmodified	_QELSGQGWTY_					0	0	0		ENSG00000237649|ENST00000428849|KIFC1	ENSG00000237649|ENST00000428849|KIFC1	ENSG00000237649|ENST00000428849|KIFC1	MULTI-SECPEP	A375_MHC_IP_R1	1	1167.93359375	1	1168.52693	1167.51965	0.005323	6.2201E-06	1.4452	0.0016887	1.4505	0.0016949	1168.5294694737966	74.121	0.55783	74.121	73.893	74.451	0					13	10	2	0	0	0	0.83447	1	27032	27032		23.79	9.8837	1	1824100			40448	9758	29738	29975	39373	39373					-0.057406431499885
QELSGQGWTY	10	Unmodified	_QELSGQGWTY_					0	0	0		ENSG00000237649|ENST00000428849|KIFC1	ENSG00000237649|ENST00000428849|KIFC1	ENSG00000237649|ENST00000428849|KIFC1	MULTI-MSMS	A375_MHC_IP_R2	2	585.1666870117188	2	584.767103	1167.51965	-0.42731	-0.00024988	-0.097142	-5.6805E-05	-0.52445	-0.00030668	584.7670112943779	73.466	0.71481	74.201	73.938	74.653	0.73541					27	13	3	0	0	0	0.011525	2	27957	27875;27957		117.76	81.634	1	3692500			40449	9758	29738	29975	39374;39375	39375					-0.057406431499885
QELVSHMVVR	10	Unmodified	_QELVSHMVVR_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	MSMS	A375_MHC_IP_R1	1	599.692626953125	2	599.324065	1196.63358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.343	1	61.343	60.843	61.843	0								0	0	0	0.15207	1	22111	22111		13.906	1.3745	1				40450	9013	29739	29976	39376	39376					0.04312548411235184
QELWMLFVKWY	11	Unmodified	_QELWMLFVKWY_					0	0	0			REV__ENST00000582077.5_1_18:66382817-66385349:+|nuORF	REV__ENST00000582077.5_1_18:66382817-66385349:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	514.7162475585938	3	514.931974	1541.77409	-0.39398	-0.00020287	-0.59411	-0.00030593	-0.98809	-0.0005088	514.9317692724243	40.542	0.40736	40.542	40.355	40.762	0					11	7	2	0	0	0	1.0011	1	14009	14009		0.45452	0	1	1537400	+		40451	26355	29740	29977	39377	39377					0.024877073448124065
QELYECCFD	9	Unmodified	_QELYECCFD_					0	0	0			REV__nc|ENSG00000135686|Q8N4N3-2|KLHL36	REV__nc|ENSG00000135686|Q8N4N3-2|KLHL36	MULTI-MSMS	A375_MHC_IP_R1	1	575.234130859375	2	575.215	1148.41545	-0.39836	-0.00022914	-1.074	-0.00061776	-1.4723	-0.0008469	575.2128173042945	84.723	0.25488	84.723	84.494	84.749	0					5	4	2	0	0	0	0.65721	1	30998	30998		10.824	4.1008	1	374830	+		40452	18875	29741	29978	39378	39378					-0.15282429293392852
QELYFFHEL	9	Unmodified	_QELYFFHEL_					0	0	0		nc|ENSG00000113407|P26639-2|TARS1;ENSG00000113407|ENST00000265112|TARS1;ENST00000504698.1_1_5:33456142-33459991:+|nuORF	nc|ENSG00000113407|P26639-2|TARS1	nc|ENSG00000113407|P26639-2|TARS1	MULTI-MSMS	A375_MHC_IP_R1	1	613.697998046875	2	613.298039	1224.58152	-0.094316	-5.7844E-05	-0.051126	-3.1356E-05	-0.14544	-8.9199E-05	613.2980005083967	107.68	0.45953	107.68	107.39	107.85	0					16	8	2	0	0	0	0.0090323	1	39476	39476		99.799	35.838	1	3266600			40453	3150	29742	29979	39379	39379					-0.021782917308428296
QELYFFHEL	9	Unmodified	_QELYFFHEL_					0	0	0		nc|ENSG00000113407|P26639-2|TARS1;ENSG00000113407|ENST00000265112|TARS1;ENST00000504698.1_1_5:33456142-33459991:+|nuORF	nc|ENSG00000113407|P26639-2|TARS1	nc|ENSG00000113407|P26639-2|TARS1	MULTI-MSMS	A375_MHC_IP_R2	2	613.6971435546875	2	613.298039	1224.58152	-0.62427	-0.00038286	-0.069294	-4.2498E-05	-0.69357	-0.00042536	613.298061514079	106.8	0.65982	107.55	107.19	107.85	0.75977					21	9	3	0	0	0	0.0096397	1	40335	40335		126.57	56.234	1	2756300			40454	3150	29742	29979	39380	39380					-0.021782917308428296
QELYKLNP	8	Unmodified	_QELYKLNP_					0	0	0		nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-5|CNOT4;nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4	nc|ENSG00000080802|O95628-7|CNOT4	nc|ENSG00000080802|O95628-7|CNOT4	MULTI-SECPEP	A375_MHC_IP_R1	1	502.1484069824219	2	502.7742	1003.53385	-0.46517	-0.00023388	3.9813	0.0020017	3.5161	0.0017678	502.77570343980983	46.57	0.30381	46.57	46.395	46.699	0					8	5	2	0	0	0	0.8824	1	16322	16322		30.225	0	1	991010			40455	14489	29743	29980	39381	39381					0.03222054068953639
QEMEEDFLF	9	Unmodified	_QEMEEDFLF_					0	0	0			REV__nc|ENSG00000155506|Q6PKG0-3|LARP1	REV__nc|ENSG00000155506|Q6PKG0-3|LARP1	MULTI-MSMS	A375_MHC_IP_R1	1	594.6641845703125	2	594.249897	1186.48524	-0.73459	-0.00043653	-2.5244	-0.0015001	-3.259	-0.0019366	594.2480608024835	41.372	0.25475	41.372	41.164	41.419	0					7	4	2	0	0	0	0.51106	1	14286	14286		19.257	1.1106	1	2491900	+		40456	19924	29744	29981	39382	39382					-0.10054227353111855
QEMEEDFLF	9	Unmodified	_QEMEEDFLF_					0	0	0			REV__nc|ENSG00000155506|Q6PKG0-3|LARP1	REV__nc|ENSG00000155506|Q6PKG0-3|LARP1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	594.249897	1186.48524	-0.73459	-0.00043653	-2.5244	-0.0015001	-3.259	-0.0019366	594.2480608024835	41.372	0.25475	41.372	41.164	41.419	0	-0.064505	0.00033812	NaN	19.257	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2491900	+		40457	19924	29744	29981							-0.10054227353111855
QEMLRFVA	8	Unmodified	_QEMLRFVA_					0	0	0			REV__nc|ENSG00000182511|P07332-2|FES	REV__nc|ENSG00000182511|P07332-2|FES	MULTI-SECPEP	A375_MHC_IP_R2	2	497.17364501953125	2	497.262945	992.511337	-0.71816	-0.00035711	0.044537	2.2147E-05	-0.67362	-0.00033497	497.2629891101139	41.23	0.9125	42.005	41.438	42.35	0.77451					32	17	3	0	0	0	0.91495	1	15176	15176		12.532	0	1	6571700	+		40458	21697	29745	29982	39383	39383					0.014781313996763856
QEMLYRMY	8	Unmodified	_QEMLYRMY_					0	0	0			REV__ENST00000480199.1_1_8:28157565-28157883:+|nuORF	REV__ENST00000480199.1_1_8:28157565-28157883:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	567.1340942382812	2	567.259545	1132.50454	-0.5585	-0.00031682	-1.1341	-0.0006433	-1.6926	-0.00096012	567.2588599342791	65.692	0.50783	66.43	66.172	66.68	0.73812					13	9	2	0	0	0	0.93661	1	24839	24839		15.847	0	1	1261400	+		40459	25243	29746	29983	39384	39384					-0.05641549543202018
QEMNIPEKGF	10	Oxidation (M)	_QEM(Oxidation (M))NIPEKGF_		QEM(1)NIPEKGF		QEM(140)NIPEKGF	0	0	1		ENSG00000143157|ENST00000367876|POGK	ENSG00000143157|ENST00000367876|POGK	ENSG00000143157|ENST00000367876|POGK	MULTI-MSMS	A375_MHC_IP_R1	1	605.184326171875	2	604.784438	1207.55432	-0.19803	-0.00011976	-0.38278	-0.0002315	-0.5808	-0.00035126	604.7843588553973	37.353	0.61115	37.353	36.996	37.607	0					20	11	2	0	0	0	0.0015274	1	12588	12588		142.92	75.081	1	2830000			40460	5351	29747	29984	39385	39385		288			-0.04115143333569904
QEMNIPEKGF	10	Oxidation (M)	_QEM(Oxidation (M))NIPEKGF_		QEM(1)NIPEKGF		QEM(130)NIPEKGF	0	0	1		ENSG00000143157|ENST00000367876|POGK	ENSG00000143157|ENST00000367876|POGK	ENSG00000143157|ENST00000367876|POGK	MULTI-MSMS	A375_MHC_IP_R2	2	605.1841430664062	2	604.784438	1207.55432	-0.85009	-0.00051412	0.24253	0.00014668	-0.60756	-0.00036744	604.7845582662495	36.665	0.50857	37.436	37.106	37.615	0.7709					15	9	2	0	0	0	0.006963	1	13368	13368		132.22	72.851	1	4084300			40461	5351	29747	29984	39386	39386		288			-0.04115143333569904
QEMNIPEKGF	10	Unmodified	_QEMNIPEKGF_					0	0	0		ENSG00000143157|ENST00000367876|POGK	ENSG00000143157|ENST00000367876|POGK	ENSG00000143157|ENST00000367876|POGK	MULTI-SECPEP	A375_MHC_IP_R1	1	597.1212158203125	2	596.786981	1191.55941	-0.41767	-0.00024926	-0.80378	-0.00047969	-1.2215	-0.00072895	596.7865529489212	55.202	0.71063	55.202	54.72	55.431	0					21	13	2	0	0	0	0.81654	1	19676	19676		20.581	13.858	1	4200700			40462	5351	29747	29985	39387	39387					-0.028708394709383356
QENAEIIKL	9	Unmodified	_QENAEIIKL_					0	0	0		nc|ENSG00000115239|Q9Y575-2|ASB3;ENSG00000115239|ENST00000263634|ASB3;nc|ENSG00000115239|Q9Y575-3|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	MULTI-SECPEP	A375_MHC_IP_R1	1	529.6976928710938	2	529.298039	1056.58152	-0.56539	-0.00029926	-0.27815	-0.00014723	-0.84354	-0.00044648	529.2978924498029	61.509	0.56031	61.509	61.279	61.839	0					18	10	2	0	0	0	0.010806	1	22181	22181		135.86	32.04	1	12343000			40463	3287	29748	29986	39388	39388					0.0554970826913177
QENAEIIKL	9	Unmodified	_QENAEIIKL_					0	0	0		nc|ENSG00000115239|Q9Y575-2|ASB3;ENSG00000115239|ENST00000263634|ASB3;nc|ENSG00000115239|Q9Y575-3|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	MULTI-SECPEP	A375_MHC_IP_R2	2	529.6973876953125	2	529.298039	1056.58152	-0.86299	-0.00045678	-0.29942	-0.00015848	-1.1624	-0.00061526	529.2978013147657	60.688	0.6609	61.433	61.057	61.718	0.74503					34	12	4	0	0	0	0.011256	1	22949	22949		121.35	31.211	1	12419000			40464	3287	29748	29986	39389	39389					0.0554970826913177
QENAIAQLI	9	Unmodified	_QENAIAQLI_					0	0	0			REV__ENST00000509018.5_1_5:130762813-130764597:-|nuORF	REV__ENST00000509018.5_1_5:130762813-130764597:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	500.6767272949219	2	500.277106	998.53966	-0.56737	-0.00028384	-0.021402	-1.0707E-05	-0.58877	-0.00029455	500.27708874568583	36.836	1.016	36.836	36.489	37.505	0					25	19	2	0	0	0	0.059859	1	12365	12365		81.89	24.419	1	9278300	+		40465	25563	29749	29987	39390	39390					0.04033152580609567
QENAIAQLI	9	Unmodified	_QENAIAQLI_					0	0	0			REV__ENST00000509018.5_1_5:130762813-130764597:-|nuORF	REV__ENST00000509018.5_1_5:130762813-130764597:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	500.1343688964844	2	500.277106	998.53966	-0.71039	-0.00035539	-0.12745	-6.3759E-05	-0.83784	-0.00041915	500.2769997387537	36.016	0.56171	36.78	36.486	37.048	0.76338					19	10	2	0	0	0	0.04038	1	13061	13061		96.111	28.767	1	10375000	+		40466	25563	29749	29987	39391	39391					0.04033152580609567
QENAVNPVW	9	Unmodified	_QENAVNPVW_					0	0	0		PLCB1|p.G720E|1|0.12|ENSG00000182621|chr20:8737143-8737143|G/A|missense_variant	PLCB1|p.G720E|1|0.12|ENSG00000182621|chr20:8737143-8737143|G/A|missense_variant	PLCB1|p.G720E|1|0.12|ENSG00000182621|chr20:8737143-8737143|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	529.6519165039062	2	528.759081	1055.50361	-0.84292	-0.0004457	0.78623	0.00041572	-0.056692	-2.9977E-05	528.7593852889491	60.891	0.40457	61.636	61.464	61.869	0.74503					18	7	3	0	0	0	0.38603	1	23001	23001		25.399	2.2509	1	7886300			40467	15193	29750	29988	39392	39392					-0.02192304596246686
QENDFSKRI	9	Unmodified	_QENDFSKRI_					0	0	0		nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;ACACA|p.S392Ffs*23|1|0.15|ENSG00000278540|chr17:37263839-37263840|-/A|frameshift_variant	nc|ENSG00000278540|Q13085|ACACA	nc|ENSG00000278540|Q13085|ACACA	MULTI-MSMS	A375_MHC_IP_R1	1	379.92803955078125	3	379.528005	1135.56219	0.15085	5.7253E-05	-0.21815	-8.2793E-05	-0.067293	-2.554E-05	379.5278987405735	25.752	0.65987	25.752	25.408	26.068	0					26	12	3	0	0	0	0.032333	2	7572	7546;7572		75.571	59.005	1	15069000			40468	10037	29751	29989	39393;39394	39394					-0.00017248021754312504
QENEGTSRFY	10	Unmodified	_QENEGTSRFY_					0	0	0			REV__BRF2|p.S56F|1|0.69|ENSG00000104221|chr8:37848643-37848643|G/A|missense_variant	REV__BRF2|p.S56F|1|0.69|ENSG00000104221|chr8:37848643-37848643|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	615.725341796875	2	615.772916	1229.53128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.275	1	77.275	76.775	77.775	0								0	0	0	0.15136	1	28187	28187		15.248	1.3424	1		+		40469	15526	29752	29990	39395	39395					-0.07430446126636525
QENEHIYNL	9	Unmodified	_QENEHIYNL_					0	0	0		nc|ENSG00000108588|Q96A33-2|CCDC47;ENSG00000108588|ENST00000225726|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	MULTI-MSMS	A375_MHC_IP_R1	1	580.6729736328125	2	580.272552	1158.53055	0.32983	0.00019139	-0.083536	-4.8473E-05	0.24629	0.00014292	580.272492007386	44.752	0.66021	44.752	44.37	45.03	0					20	12	2	0	0	0	0.0061124	1	15654	15654		133.05	79.219	1	6116500			40470	2819	29753	29991	39396	39396					-0.04237240775705686
QENEHIYNL	9	Unmodified	_QENEHIYNL_					0	0	0		nc|ENSG00000108588|Q96A33-2|CCDC47;ENSG00000108588|ENST00000225726|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	MULTI-MSMS	A375_MHC_IP_R2	2	580.6921997070312	2	580.272552	1158.53055	-0.10489	-6.0863E-05	1.988	0.0011536	1.8831	0.0010927	580.2725669522396	43.949	0.85802	44.718	44.177	45.035	0.7691					34	15	3	0	0	0	0.024574	2	16324	16324;16418		79.596	33.897	1	4761100			40471	2819	29753	29991	39397;39398	39397					-0.04237240775705686
QENEQRRLF	9	Unmodified	_QENEQRRLF_					0	0	0		nc|ENSG00000020426|P51948-2|MNAT1;ENSG00000020426|ENST00000261245|MNAT1;ENST00000554641.1_1_14:61278722-61346563:+|nuORF	nc|ENSG00000020426|P51948-2|MNAT1	nc|ENSG00000020426|P51948-2|MNAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	407.6109924316406	3	407.210788	1218.61053	-0.43385	-0.00017667	1.3439	0.00054723	0.91001	0.00037056	407.2114472278968	28.037	0.55293	28.037	27.786	28.339	0					23	10	3	0	0	0	0.71071	1	8624	8624		14.405	0.79051	1	2364200			40472	1058	29754	29992	39399	39399					0.009972456181458256
QENEQRRLF	9	Unmodified	_QENEQRRLF_					0	0	0		nc|ENSG00000020426|P51948-2|MNAT1;ENSG00000020426|ENST00000261245|MNAT1;ENST00000554641.1_1_14:61278722-61346563:+|nuORF	nc|ENSG00000020426|P51948-2|MNAT1	nc|ENSG00000020426|P51948-2|MNAT1	MULTI-MSMS	A375_MHC_IP_R2	2	407.6108093261719	3	407.210788	1218.61053	0.062178	2.5319E-05	0.029116	1.1856E-05	0.091293	3.7176E-05	407.2107387555255	27.343	0.66489	28.021	27.484	28.149	0.67857					16	12	2	0	0	0	0.41856	1	9345	9345		23.801	10.928	1	3254100			40473	1058	29754	29992	39400	39400					0.009972456181458256
QENFQDYD	8	Unmodified	_QENFQDYD_					0	0	0		tr|U7SZK3|U7SZK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00782PE=4SV=1	tr|U7SZK3|U7SZK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00782PE=4SV=1	tr|U7SZK3|U7SZK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00782PE=4SV=1	MSMS	A375_MHC_IP_R2	2	529.6973876953125	2	529.706711	1057.39887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.603	1	61.348	60.848	61.848	0.74503								0	0	0	0.16876	1	22949	22949		24.674	1.9376	1				40474	29865	29755	29993	39401	39401					-0.1275347086345846
QENHFVEGLLY	11	Unmodified	_QENHFVEGLLY_					0	0	0		nc|ENSG00000116133|Q15392-2|DHCR24;ENSG00000116133|ENST00000371269|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	MULTI-SECPEP	A375_MHC_IP_R1	1	675.2300415039062	2	674.830234	1347.64592	-0.72198	-0.00048721	0.04117	2.7783E-05	-0.68081	-0.00045943	674.8303195119723	89.905	0.45385	89.905	89.679	90.133	0					11	8	2	0	0	0	0.39105	1	33044	33044		55.235	33.698	1	2669800			40475	3373	29756	29994	39402	39402					-0.014001366447018881
QENHFVEGLLY	11	Unmodified	_QENHFVEGLLY_					0	0	0		nc|ENSG00000116133|Q15392-2|DHCR24;ENSG00000116133|ENST00000371269|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	MULTI-MSMS	A375_MHC_IP_R2	2	675.2297973632812	2	674.830234	1347.64592	-0.62367	-0.00042087	0.095766	6.4626E-05	-0.52791	-0.00035625	674.8301165593216	89.129	0.50055	89.861	89.685	90.186	0.7318					15	9	2	0	0	0	0.28899	1	33950	33950		47.594	16.958	1	2301300			40476	3373	29756	29994	39403	39403					-0.014001366447018881
QENIFPNRY	9	Unmodified	_QENIFPNRY_					0	0	0		ENSG00000184384|ENST00000524717|MAML2	ENSG00000184384|ENST00000524717|MAML2	ENSG00000184384|ENST00000524717|MAML2	MULTI-SECPEP	A375_MHC_IP_R2	2	591.1903076171875	2	590.790912	1179.56727	-1.0076	-0.00059528	0.86306	0.00050989	-0.14454	-8.5391E-05	590.7915012829985	52.507	0.45623	53.259	53.032	53.489	0.75225					13	8	2	0	0	0	0.03109	1	19847	19847		92.653	33.975	1	2653900			40477	8580	29757	29995	39404	39404					-0.015329441591575232
QENIVRILL	9	Unmodified	_QENIVRILL_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	MULTI-SECPEP	A375_MHC_IP_R1	1	549.1278686523438	2	549.337498	1096.66044	-0.48641	-0.0002672	-0.15485	-8.5063E-05	-0.64126	-0.00035227	549.3374057745629	102.09	1.1126	102.09	101.7	102.81	0					36	21	4	0	0	0	0.031881	1	37501	37501		129.77	40.818	1	6546800			40478	8491	29758	29996	39405	39405					0.11597980294095578
QENIVRILL	9	Unmodified	_QENIVRILL_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	MULTI-SECPEP	A375_MHC_IP_R2	2	549.7367553710938	2	549.337498	1096.66044	-0.65329	-0.00035888	0.73565	0.00040412	0.08236	4.5244E-05	549.3379398595066	101.06	0.86723	101.82	101.5	102.36	0.76428					28	16	3	0	0	0	0.011309	1	38279	38279		157.8	43.146	1	5933100			40479	8491	29758	29996	39406	39406					0.11597980294095578
QENKKKPDL	9	Unmodified	_QENKKKPDL_					0	0	0			REV__tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	REV__tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	550.7088012695312	2	550.308938	1098.60332	-0.89806	-0.00049421	0.61018	0.00033579	-0.28788	-0.00015842	550.3094580114396	55.79	0.40789	56.54	56.337	56.745	0.75014					16	7	3	0	0	0	0.69507	1	21106	21106		9.3831	6.1018	1	1902800	+		40480	28673	29759	29997	39407	39407					0.05796513017708094
QENKRLFGF	9	Unmodified	_QENKRLFGF_					0	0	0		ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	570.1616821289062	2	569.803823	1137.59309	-0.53697	-0.00030597	-1.8594	-0.0010595	-2.3963	-0.0013654	569.8027087419314	36.8	0.86218	36.8	36.489	37.351	0					20	16	2	0	0	0	0.47674	1	12281	12281		25.399	1.3787	1	2647600			40481	6248	29760	29998	39408	39408					0.029799500831359182
QENPFFRKL	9	Unmodified	_QENPFFRKL_					0	0	0		nc|ENSG00000037474|Q08J23-3|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;ENST00000513888.5_1_5:6600041-6604993:-|nuORF;ENST00000502932.1_1_5:6604245-6604729:-|nuORF	nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	MULTI-MSMS	A375_MHC_IP_R1	1	393.9486999511719	3	393.548741	1177.62439	0.066056	2.5996E-05	-0.079125	-3.114E-05	-0.013069	-5.1435E-06	393.54869065284754	55.402	1.7773	55.402	54.67	56.447	0					114	34	5	0	0	0	0.0085749	1	19738	19738		143.21	125.77	1	142120000			40482	1146	29761	29999	39409	39409					0.04268523117229961
QENPFFRKL	9	Unmodified	_QENPFFRKL_					0	0	0		nc|ENSG00000037474|Q08J23-3|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;ENST00000513888.5_1_5:6600041-6604993:-|nuORF;ENST00000502932.1_1_5:6604245-6604729:-|nuORF	nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	MULTI-SECPEP	A375_MHC_IP_R1	1	589.7266845703125	2	589.819473	1177.62439	-0.30083	-0.00017744	-0.020232	-1.1933E-05	-0.32106	-0.00018937	589.8193600875461	55.399	0.71403	55.399	55.075	55.79	0					29	13	3	0	0	0	0.011236	1	19796	19796		118.07	118.07	1	12842000			40483	1146	29761	29999	39410	39410					0.04268523117229961
QENPFFRKL	9	Unmodified	_QENPFFRKL_					0	0	0		nc|ENSG00000037474|Q08J23-3|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;ENST00000513888.5_1_5:6600041-6604993:-|nuORF;ENST00000502932.1_1_5:6604245-6604729:-|nuORF	nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	MULTI-MSMS	A375_MHC_IP_R2	2	393.9486999511719	3	393.548741	1177.62439	-0.39608	-0.00015588	0.14653	5.7666E-05	-0.24956	-9.8213E-05	393.54878593732167	54.489	1.6287	55.24	54.608	56.237	0.75075					101	31	5	0	0	0	0.010732	3	20491	20491;20694;20736		151.48	131.85	1	128550000			40484	1146	29761	29999	39411;39412;39413	39411					0.04268523117229961
QENPFFRKL	9	Unmodified	_QENPFFRKL_					0	0	0		nc|ENSG00000037474|Q08J23-3|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;ENST00000513888.5_1_5:6600041-6604993:-|nuORF;ENST00000502932.1_1_5:6604245-6604729:-|nuORF	nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	MULTI-SECPEP	A375_MHC_IP_R2	2	589.6243896484375	2	589.819473	1177.62439	-0.82123	-0.00048437	0.99705	0.00058808	0.17583	0.00010371	590.3216618923748	54.294	0.81334	55.044	54.608	55.422	0.75075					44	15	4	0	0	0	0.070665	1	20542	20542		69.105	46.369	1	12011000			40485	1146	29761	29999	39414	39414					0.04268523117229961
QENPKFLSHF	10	Unmodified	_QENPKFLSHF_					0	0	0		FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENST00000580966.1_1_17:18149569-18150009:-|nuORF	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	416.6019287109375	3	416.212017	1245.61422	0.64036	0.00026653	-0.39456	-0.00016422	0.2458	0.0001023	416.2118473378696	49.444	1.0174	49.444	49.084	50.101	0					43	19	4	0	0	0	0.27133	1	17500	17500		30.431	20.667	1	4654600			40486	8107	29762	30000	39415	39415					0.0012391539198688406
QENPKFLSHF	10	Unmodified	_QENPKFLSHF_					0	0	0		FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENST00000580966.1_1_17:18149569-18150009:-|nuORF	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	416.6122741699219	3	416.212017	1245.61422	-0.062335	-2.5944E-05	-0.22689	-9.4433E-05	-0.28922	-0.00012038	416.2119906059157	48.542	1.3174	49.3	48.98	50.297	0.75737					44	25	3	0	0	0	0.32528	2	18200	18200;18217		28.181	18.937	1	5211000			40487	8107	29762	30000	39416;39417	39416					0.0012391539198688406
QENRVVAFF	9	Unmodified	_QENRVVAFF_					0	0	0		ENSG00000143303|ENST00000368216|METTL25B	ENSG00000143303|ENST00000368216|METTL25B	ENSG00000143303|ENST00000368216|METTL25B	MULTI-SECPEP	A375_MHC_IP_R1	1	555.6903076171875	2	555.290548	1108.56654	-0.64596	-0.0003587	0.05223	2.9003E-05	-0.59373	-0.00032969	555.2901565342268	81.099	0.96289	81.099	80.441	81.404	0					31	18	3	0	0	0	0.011107	1	29612	29612		89.401	41.652	1	4737800			40488	5366	29763	30001	39418	39418					0.01660261191796053
QENSGTQTARS	11	Unmodified	_QENSGTQTARS_					0	0	0		ENST00000543072.1_1_12:123849536-123850236:+|nuORF	ENST00000543072.1_1_12:123849536-123850236:+|nuORF	ENST00000543072.1_1_12:123849536-123850236:+|nuORF	MSMS	A375_MHC_IP_R1	1	589.7034301757812	2	589.773448	1177.53234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.89	1	81.89	81.39	82.39	0								0	0	0	0.14085	1	29933	29933		26.268	0.86883	1				40489	13310	29764	30002	39419	39419					-0.049322317577662034
QENSVYLSY	9	Unmodified	_QENSVYLSY_					0	0	0		nc|ENSG00000096872|Q96LB3-2|IFT74;ENSG00000096872|ENST00000380062|IFT74	nc|ENSG00000096872|Q96LB3-2|IFT74	nc|ENSG00000096872|Q96LB3-2|IFT74	MULTI-MSMS	A375_MHC_IP_R1	1	552.7447509765625	2	551.756204	1101.49785	-0.28776	-0.00015877	0.07127	3.9324E-05	-0.21649	-0.00011945	551.7560994227608	70.062	1.0167	70.062	69.732	70.749	0					57	19	4	0	0	0	0.60101	1	25516	25516		14.838	4.7643	1	8033900			40490	2063	29765	30003	39420	39420					-0.0488344789855546
QENSVYLSY	9	Unmodified	_QENSVYLSY_					0	0	0		nc|ENSG00000096872|Q96LB3-2|IFT74;ENSG00000096872|ENST00000380062|IFT74	nc|ENSG00000096872|Q96LB3-2|IFT74	nc|ENSG00000096872|Q96LB3-2|IFT74	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1558227539062	2	551.756204	1101.49785	-0.69051	-0.00038099	-0.036969	-2.0398E-05	-0.72748	-0.00040139	551.7560369430543	69.495	0.9138	70.229	69.829	70.743	0.73421					44	17	4	0	0	0	0.05021	1	26277	26277		78.728	30.979	1	8358500			40491	2063	29765	30003	39421	39421					-0.0488344789855546
QENTEILGYL	10	Unmodified	_QENTEILGYL_					0	0	0		nc|ENSG00000145014|Q2T9K0-4|TMEM44;ENSG00000145014|ENST00000347147|TMEM44;nc|ENSG00000145014|Q2T9K0-7|TMEM44;nc|ENSG00000145014|Q2T9K0-6|TMEM44;nc|ENSG00000145014|Q2T9K0|TMEM44	nc|ENSG00000145014|Q2T9K0-4|TMEM44	nc|ENSG00000145014|Q2T9K0-4|TMEM44	MULTI-SECPEP	A375_MHC_IP_R2	2	590.7208862304688	2	590.298236	1178.58192	-0.79106	-0.00046696	0.14632	8.6373E-05	-0.64474	-0.00038059	590.2984291414376	54.415	0.55643	55.165	54.865	55.422	0.75075					15	10	2	0	0	0	0.64716	1	20525	20525		29.082	9.8246	1	1194300			40492	5532	29766	30004	39422	39422					-0.00022916801663086517
QENYQISVSD	10	Unmodified	_QENYQISVSD_					0	0	0			REV__ENSG00000183808|ENST00000520560|RBM12B	REV__ENSG00000183808|ENST00000520560|RBM12B	MULTI-SECPEP	A375_MHC_IP_R1	1	591.1785278320312	2	591.7673	1181.52005	-0.34271	-0.00020281	2.0536	0.0012153	1.7109	0.0010125	591.7696412793139	55.304	0.1533	55.304	55.177	55.33	0					4	2	2	0	0	0	0.74754	1	19776	19776		17.113	4.8722	1	499970	+		40493	21781	29767	30005	39423	39423					-0.06345268220798062
QENYQISVSD	10	Unmodified	_QENYQISVSD_					0	0	0			REV__ENSG00000183808|ENST00000520560|RBM12B	REV__ENSG00000183808|ENST00000520560|RBM12B	MULTI-MATCH	A375_MHC_IP_R2	2		2	591.7673	1181.52005	-0.73664	-0.00043592	5.0573	0.0029927	4.3206	0.0025568	592.2721530024953	54.806	0.30726	55.557	55.37	55.678	0.75075	0.12652	0.00067905	NaN	17.113	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2097700	+		40494	21781	29767	30005							-0.06345268220798062
QEPDFEEKRF	10	Unmodified	_QEPDFEEKRF_					0	0	0		ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	MULTI-MSMS	A375_MHC_IP_R1	1	442.1324157714844	3	442.210453	1323.60953	0.0054841	2.4251E-06	-0.0097885	-4.3286E-06	-0.0043044	-1.9034E-06	442.21042419190894	37.565	1.3229	37.565	36.895	38.218	0					80	25	4	0	0	0	0.064809	2	12581	12581;12853		55.467	41.932	1	29086000			40495	6311	29768	30006	39424;39425	39424					-0.039330135414502365
QEPDFEEKRF	10	Unmodified	_QEPDFEEKRF_					0	0	0		ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	MULTI-MSMS	A375_MHC_IP_R1	1	663.2118530273438	2	662.812042	1323.60953	-0.4278	-0.00028355	-0.3265	-0.00021641	-0.7543	-0.00049996	662.8119725799164	37.598	0.81644	37.598	37.096	37.913	0					26	15	2	0	0	0	0.14143	1	12719	12719		55.235	26.153	1	3208200			40496	6311	29768	30006	39426	39426					-0.039330135414502365
QEPESIRKW	9	Unmodified	_QEPESIRKW_					0	0	0		nc|ENSG00000175416|P09497-2|CLTB;ENSG00000175416|ENST00000310418|CLTB	nc|ENSG00000175416|P09497-2|CLTB	nc|ENSG00000175416|P09497-2|CLTB	MULTI-MSMS	A375_MHC_IP_R1	1	391.940185546875	3	391.540134	1171.59857	0.18717	7.3286E-05	-0.071347	-2.7935E-05	0.11583	4.535E-05	391.5401452404668	28.545	0.80812	28.545	28.037	28.845	0					30	15	3	0	0	0	0.2989	1	8815	8815		30.703	15.746	1	5828500			40497	7958	29769	30007	39427	39427					0.019636288749325104
QEPESIRKW	9	Unmodified	_QEPESIRKW_					0	0	0		nc|ENSG00000175416|P09497-2|CLTB;ENSG00000175416|ENST00000310418|CLTB	nc|ENSG00000175416|P09497-2|CLTB	nc|ENSG00000175416|P09497-2|CLTB	MULTI-MSMS	A375_MHC_IP_R2	2	391.9400329589844	3	391.540134	1171.59857	-0.19732	-7.7259E-05	0.39803	0.00015585	0.20071	7.8587E-05	391.5402006235467	27.809	0.76083	28.487	28.047	28.808	0.67857					28	14	3	0	0	0	0.16286	1	9527	9527		40.725	21.099	1	6025100			40498	7958	29769	30007	39428	39428					0.019636288749325104
QEPFVFREF	9	Unmodified	_QEPFVFREF_					0	0	0		nc|ENSG00000198466|Q96SQ5-2|ZNF587;ENSG00000198466|ENST00000339656|ZNF587;ENSG00000173480|ENST00000312026|ZNF417	nc|ENSG00000198466|Q96SQ5-2|ZNF587	nc|ENSG00000198466|Q96SQ5-2|ZNF587	MULTI-SECPEP	A375_MHC_IP_R1	1	600.197998046875	2	599.798206	1197.58186	-0.32595	-0.0001955	0.11787	7.0699E-05	-0.20808	-0.0001248	599.7982008289175	97.974	0.40738	97.974	97.743	98.151	0					13	7	2	0	0	0	0.57304	1	36003	36003		29.841	11.467	1	2200800			40499	7801	29770	30008	39429	39429					-0.00902872010988176
QEPFVFREF	9	Unmodified	_QEPFVFREF_					0	0	0		nc|ENSG00000198466|Q96SQ5-2|ZNF587;ENSG00000198466|ENST00000339656|ZNF587;ENSG00000173480|ENST00000312026|ZNF417	nc|ENSG00000198466|Q96SQ5-2|ZNF587	nc|ENSG00000198466|Q96SQ5-2|ZNF587	MULTI-SECPEP	A375_MHC_IP_R2	2	600.1983032226562	2	599.798206	1197.58186	-0.71519	-0.00042897	0.25463	0.00015273	-0.46056	-0.00027624	599.7987408054582	97.164	0.56015	97.92	97.67	98.23	0.75586					22	10	3	0	0	0	0.74875	1	36883	36883		15.248	9.5166	1	2379800			40500	7801	29770	30008	39430	39430					-0.00902872010988176
QEPGLSGRFF	10	Unmodified	_QEPGLSGRFF_					0	0	0		ENSG00000125827|ENST00000246024|TMX4	ENSG00000125827|ENST00000246024|TMX4	ENSG00000125827|ENST00000246024|TMX4	MULTI-MSMS	A375_MHC_IP_R1	1	569.6891479492188	2	569.288005	1136.56146	-0.35743	-0.00020348	0.67437	0.00038391	0.31694	0.00018043	569.288543922485	76.003	0.55547	76.003	75.714	76.269	0					20	10	3	0	0	0	0.38709	1	27740	27740		34.932	6.4452	1	2384700			40501	3997	29771	30009	39431	39431					-0.0013604267080609134
QEPPGQPQV	9	Unmodified	_QEPPGQPQV_					0	0	0			REV__ENST00000497824.5_1_1:156374348-156399265:-|nuORF	REV__ENST00000497824.5_1_1:156374348-156399265:-|nuORF	MSMS	A375_MHC_IP_R2	2	490.15496826171875	2	490.245806	978.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.329	1	29.008	28.508	29.508	0.67857								0	0	0	0.15486	1	9767	9767		11.64	0.52583	1		+		40502	25471	29772	30010	39432	39432					-0.013039934875678227
QEPPVQKGF	9	Unmodified	_QEPPVQKGF_					0	0	0		nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3	nc|ENSG00000070882|Q9H4L5-8|OSBPL3	nc|ENSG00000070882|Q9H4L5-8|OSBPL3	MULTI-SECPEP	A375_MHC_IP_R1	1	515.080078125	2	515.271824	1028.5291	-0.4988	-0.00025702	-0.27006	-0.00013916	-0.76887	-0.00039618	515.2716034581807	31.591	0.91536	31.591	31.16	32.075	0					26	17	2	0	0	0	0.47368	1	10313	10313		20.454	3.5113	1	3208900			40503	1502	29773	30011	39433	39433					0.01597169926208153
QEPQFPLAMSL	11	Unmodified	_QEPQFPLAMSL_					0	0	0			REV__nc|ENSG00000121964|Q4AE62-3|GTDC1	REV__nc|ENSG00000121964|Q4AE62-3|GTDC1	MULTI-SECPEP	A375_MHC_IP_R2	2	421.2906799316406	3	420.88128	1259.62201	-0.43066	-0.00018126	0.7885	0.00033186	0.35784	0.00015061	420.88149758660023	24.434	0.45713	25.078	24.907	25.364	0.64368					11	8	2	0	0	0	0.99482	1	8012	8012		6.2344	0.36622	1	2703500	+		40504	18182	29774	30012	39434	39434					0.002583065972658005
QEQAQELNMP	10	Unmodified	_QEQAQELNMP_					0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	MULTI-MSMS	A375_MHC_IP_R1	1	595.229736328125	2	594.271695	1186.52884	-0.2422	-0.00014393	0.67935	0.00040372	0.43715	0.00025979	594.271682632179	70.417	0.51287	70.417	70.135	70.648	0					19	9	3	0	0	0	0.69306	2	25552	25552;25600		13.906	1.9497	1	1974800	+		40505	21936	29775	30013	39435;39436	39435					-0.056966178559605396
QEQAQELNMP	10	Unmodified	_QEQAQELNMP_					0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	594.271695	1186.52884	-0.2422	-0.00014393	0.67935	0.00040372	0.43715	0.00025979	594.271682632179	70.417	0.51287	70.417	70.135	70.648	0	-0.047825	0.00051338	NaN	13.906	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1974800	+		40506	21936	29775	30013							-0.056966178559605396
QEQAQELNMP	10	Unmodified	_QEQAQELNMP_					0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	MULTI-MATCH	A375_MHC_IP_R2	2		2	594.271695	1186.52884	-0.4874	-0.00028965	0.092194	5.4788E-05	-0.3952	-0.00023486	594.2718843849816	69.778	0.50925	70.512	70.233	70.743	0.73421	0.047825	-0.00018448	NaN	13.906	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2319400	+		40507	21936	29775	30013							-0.056966178559605396
QEQDEDGTEED	11	Unmodified	_QEQDEDGTEED_					0	0	0		nc|ENSG00000148498|Q8TEW0-9|PARD3;nc|ENSG00000148498|Q8TEW0-10|PARD3;nc|ENSG00000148498|Q8TEW0-8|PARD3;nc|ENSG00000148498|Q8TEW0-7|PARD3;nc|ENSG00000148498|Q8TEW0-6|PARD3;nc|ENSG00000148498|Q8TEW0-4|PARD3;nc|ENSG00000148498|Q8TEW0-11|PARD3;ENSG00000148498|ENST00000374788|PARD3;nc|ENSG00000148498|Q8TEW0|PARD3	nc|ENSG00000148498|Q8TEW0-9|PARD3	nc|ENSG00000148498|Q8TEW0-9|PARD3	MSMS	A375_MHC_IP_R1	1	647.6906127929688	2	647.731308	1293.44806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.529	1	91.529	91.029	92.029	0								0	0	0	0.16124	1	33629	33629		12.241	2.8575	1				40508	5748	29776	30014	39437	39437					-0.1869227215581759
QEQDHCMHLE	10	Unmodified	_QEQDHCMHLE_					0	0	0		nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-MSMS	A375_MHC_IP_R1	1	424.2381591796875	3	423.837745	1268.49141	-0.2238	-9.4855E-05	0.89578	0.00037966	0.67197	0.00028481	423.83822938522206	38.472	0.46088	38.472	38.218	38.679	0					20	8	3	0	0	0	0.70651	1	13058	13058		5.4027	1.2861	1	6341100			40509	14445	29777	30015	39438	39438					-0.13210032393226356
QEQDHCMHLE	10	Unmodified	_QEQDHCMHLE_					0	0	0		nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	423.837745	1268.49141	-0.2238	-9.4855E-05	0.89578	0.00037966	0.67197	0.00028481	423.83822938522206	38.472	0.46088	38.472	38.218	38.679	0	-0.068306	0.00031056	NaN	5.4027	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6341100			40510	14445	29777	30015							-0.13210032393226356
QEQEFYEQKIK	11	Unmodified	_QEQEFYEQKIK_					0	0	0		ENSG00000011275|ENST00000389902|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;nc|ENSG00000011275|Q9NWF9-3|RNF216	ENSG00000011275|ENST00000389902|RNF216	ENSG00000011275|ENST00000389902|RNF216	MULTI-SECPEP	A375_MHC_IP_R1	1	367.96063232421875	4	368.187229	1468.71981	0.080962	2.9809E-05	-2.1844	-0.00080427	-2.1034	-0.00077446	368.4370428093668	19.243	0.45287	19.243	19.221	19.674	0					19	10	4	0	0	0	0.99681	1	4882	4882		7.0371	0.80273	1	81922000			40511	997	29778	30016	39439	39439					0.00419786726934035
QEQEIEHHL	9	Unmodified	_QEQEIEHHL_					0	0	0		nc|ENSG00000152492|Q8IVM0|CCDC50;ENSG00000152492|ENST00000392455|CCDC50	nc|ENSG00000152492|Q8IVM0|CCDC50	nc|ENSG00000152492|Q8IVM0|CCDC50	MULTI-SECPEP	A375_MHC_IP_R1	1	582.1590576171875	2	581.778002	1161.54145	0.049438	2.8762E-05	2.4445	0.0014222	2.4939	0.0014509	581.7775477601797	21.631	0.15101	21.631	21.505	21.656	0					4	2	2	0	0	0	0.65246	1	5692	5692		21.747	14.457	1	434880			40512	5969	29779	30017	39440	39440					-0.03285838401438923
QEQEIEQRL	9	Unmodified	_QEQEIEQRL_					0	0	0		ENSG00000143614|ENST00000368655|GATAD2B;nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A	ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	MULTI-MSMS	A375_MHC_IP_R1	1	587.19873046875	2	586.798934	1171.58332	-0.24274	-0.00014244	-0.090877	-5.3326E-05	-0.33361	-0.00019576	586.7988935272695	33.924	0.40465	33.924	33.698	34.103	0					13	7	2	0	0	0	0.0093069	1	11110	11110		173.69	66.746	1	8210000			40513	5413	29780	30018	39441	39441					0.004387172871020084
QEQEIEQRL	9	Unmodified	_QEQEIEQRL_					0	0	0		ENSG00000143614|ENST00000368655|GATAD2B;nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A	ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	MULTI-MSMS	A375_MHC_IP_R2	2	587.1985473632812	2	586.798934	1171.58332	-0.78725	-0.00046196	0.24758	0.00014528	-0.53968	-0.00031668	586.7991026751106	33.215	0.40807	33.967	33.737	34.146	0.75225					13	7	2	0	0	0	0.0074709	1	11887	11887		187.3	57.524	1	7622200			40514	5413	29780	30018	39442	39442					0.004387172871020084
QEQEKQQKKE	10	Unmodified	_QEQEKQQKKE_					0	0	0			REV__nc|ENSG00000185596|C4AMC7|WASH3P	REV__nc|ENSG00000185596|C4AMC7|WASH3P	MSMS	A375_MHC_IP_R2	2	434.9468078613281	3	434.893124	1301.65754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.216	1	34.969	34.469	35.469	0.75225								0	0	0	0.15152	1	12319	12319		14.957	0.78643	1		+		40515	27414	29781	30019	39443	39443					0.018780603785899075
QEQGEAQSEFY	11	Unmodified	_QEQGEAQSEFY_					0	0	0			REV__VPS13D|p.S4244F|1|0.28|ENSG00000048707|chr1:12497568-12497568|C/T|missense_variant	REV__VPS13D|p.S4244F|1|0.28|ENSG00000048707|chr1:12497568-12497568|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	438.5788269042969	3	439.186085	1314.53642	-0.15576	-6.8407E-05	2.7884	0.0012246	2.6327	0.0011562	439.52224489261	33.26	0.55812	33.26	33.09	33.648	0					32	10	4	0	0	0	0.99883	1	10945	10945		2.6312	1.5215	1	5593500	+		40516	28984	29782	30020	39444	39444					-0.10826187054703951
QEQIFPSFE	9	Unmodified	_QEQIFPSFE_					0	0	0			REV__tr|U7SS49|U7SS49_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01543PE=3SV=1	REV__tr|U7SS49|U7SS49_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01543PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	562.187255859375	2	562.766571	1123.51859	-0.73582	-0.00041409	-2.9505	-0.0016605	-3.6864	-0.0020746	562.7655523097852	66.028	0.66504	66.766	66.475	67.14	0.73811					24	12	3	0	0	0	0.60917	1	24981	24981		13.906	0	1	3490800	+		40517	28417	29783	30021	39445	39445					-0.03822857518912315
QEQNIKPQFF	10	Unmodified	_QEQNIKPQFF_					0	0	0		ENSG00000107021|ENST00000372648|TBC1D13;nc|ENSG00000107021|Q9NVG8-3|TBC1D13;nc|ENSG00000107021|Q9NVG8-2|TBC1D13	ENSG00000107021|ENST00000372648|TBC1D13	ENSG00000107021|ENST00000372648|TBC1D13	MULTI-SECPEP	A375_MHC_IP_R1	1	640.2266845703125	2	639.827495	1277.64044	-0.77594	-0.00049647	0.23012	0.00014724	-0.54582	-0.00034923	639.8276599455827	65.82	0.45729	65.82	65.565	66.022	0					18	8	3	0	0	0	0.44315	1	23839	23839		71.922	54.98	1	1819800			40518	2721	29784	30022	39446	39446					0.012721845634587226
QEQPFKFSY	9	Unmodified	_QEQPFKFSY_					0	0	0		ENST00000472931.6_1_7:13946033-14025001:-|nuORF;nc|ENSG00000006468|P50549-4|ETV1;nc|ENSG00000006468|P50549-5|ETV1;nc|ENSG00000006468|P50549-6|ETV1;nc|ENSG00000006468|P50549-3|ETV1;nc|ENSG00000006468|P50549-2|ETV1;ENSG00000006468|ENST00000430479|ETV1	ENST00000472931.6_1_7:13946033-14025001:-|nuORF	ENST00000472931.6_1_7:13946033-14025001:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	587.6827392578125	2	587.282389	1172.55022	-0.13402	-7.8706E-05	-0.078387	-4.6035E-05	-0.2124	-0.00012474	587.2822875618969	70.365	0.71492	70.365	69.983	70.698	0					45	13	5	0	0	0	0.010078	2	25488	25488;25580		176.43	112.47	1	55323000			40519	916	29785	30023	39447;39448	39447					-0.02914864764943559
QEQPFKFSY	9	Unmodified	_QEQPFKFSY_					0	0	0		ENST00000472931.6_1_7:13946033-14025001:-|nuORF;nc|ENSG00000006468|P50549-4|ETV1;nc|ENSG00000006468|P50549-5|ETV1;nc|ENSG00000006468|P50549-6|ETV1;nc|ENSG00000006468|P50549-3|ETV1;nc|ENSG00000006468|P50549-2|ETV1;ENSG00000006468|ENST00000430479|ETV1	ENST00000472931.6_1_7:13946033-14025001:-|nuORF	ENST00000472931.6_1_7:13946033-14025001:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	587.681640625	2	587.282389	1172.55022	-0.48818	-0.0002867	0.34711	0.00020385	-0.14107	-8.2847E-05	587.2825533483543	69.728	0.71162	70.462	70.132	70.844	0.73421					45	13	4	0	0	0	0.0042663	2	26369	26369;26433		160.69	160.69	1	64206000			40520	916	29785	30023	39449;39450	39449					-0.02914864764943559
QEQPGGIFYQ	10	Unmodified	_QEQPGGIFYQ_					0	0	0			REV__EPDR1|p.S138F|1|0.35|ENSG00000086289|chr7:37948983-37948983|C/T|missense_variant	REV__EPDR1|p.S138F|1|0.35|ENSG00000086289|chr7:37948983-37948983|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	583.2162475585938	2	583.77747	1165.54039	-0.46468	-0.00027127	0.32692	0.00019085	-0.13776	-8.0421E-05	583.7775960298145	30.822	0.75766	31.54	31.114	31.872	0.71857					29	9	4	0	0	0	0.42311	1	10960	10960		32.786	4.2912	1	20066000	+		40521	26581	29786	30024	39451	39451					-0.03576052770313254
QEQPLAEGSF	10	Unmodified	_QEQPLAEGSF_					0	0	0		ENSG00000150594|ENST00000280155|ADRA2A	ENSG00000150594|ENST00000280155|ADRA2A	ENSG00000150594|ENST00000280155|ADRA2A	MSMS	A375_MHC_IP_R1	1	553.1571655273438	2	553.261653	1104.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.554	1	46.554	46.054	47.054	0								0	0	0	0.14483	1	16341	16341		27.629	0.74515	1				40522	5851	29787	30025	39452	39452					-0.03932045524265959
QEQQAVIQEQ	10	Unmodified	_QEQQAVIQEQ_					0	0	0			REV__ENSG00000051825|ENST00000606320|MPHOSPH9	REV__ENSG00000051825|ENST00000606320|MPHOSPH9	MULTI-MSMS	A375_MHC_IP_R1	1	601.7501220703125	2	600.796392	1199.57823	-0.26642	-0.00016006	-0.24427	-0.00014676	-0.51069	-0.00030682	600.7963482818277	42.354	0.96059	42.354	42.032	42.993	0					55	18	4	0	0	0	0.68638	1	14840	14840		14.405	0	1	25104000	+		40523	16392	29788	30026	39453	39453					-0.01357586575500136
QEQQAVIQEQ	10	Unmodified	_QEQQAVIQEQ_					0	0	0			REV__ENSG00000051825|ENST00000606320|MPHOSPH9	REV__ENSG00000051825|ENST00000606320|MPHOSPH9	MULTI-SECPEP	A375_MHC_IP_R1	1	601.1959228515625	2	600.796392	1199.57823	-0.26642	-0.00016006	-0.24427	-0.00014676	-0.51069	-0.00030682	600.7963482818277	42.354	0.96059	42.354	42.032	42.993	0					55	18	4	0	0	0	0.055108	1	14608	14608		87.258	25.656	1	25104000	+		40524	16392	29788	30026	39454	39454					-0.01357586575500136
QEQQAVIQEQ	10	Unmodified	_QEQQAVIQEQ_					0	0	0			REV__ENSG00000051825|ENST00000606320|MPHOSPH9	REV__ENSG00000051825|ENST00000606320|MPHOSPH9	MULTI-SECPEP	A375_MHC_IP_R2	2	601.1959228515625	2	600.796392	1199.57823	-0.55954	-0.00033617	-0.10838	-6.5116E-05	-0.66793	-0.00040129	600.79634455475	41.637	0.96832	42.412	42.047	43.016	0.77451					49	18	4	0	0	0	0.021882	1	15405	15405		117.76	28.36	1	24663000	+		40525	16392	29788	30026	39455	39455					-0.01357586575500136
QEQQAVIQEQ	10	Unmodified	_QEQQAVIQEQ_					0	0	0			REV__ENSG00000051825|ENST00000606320|MPHOSPH9	REV__ENSG00000051825|ENST00000606320|MPHOSPH9	MULTI-SECPEP	A375_MHC_IP_R2	2	600.1719360351562	2	600.796392	1199.57823	-0.43813	-0.00026323	0.15956	9.5865E-05	-0.27857	-0.00016736	600.7965539471875	42.541	0.45836	43.313	43.014	43.472	0.7724					11	8	2	0	0	0	0.31583	1	15827	15827		39.213	7.1755	1	1764000	+		40526	16392	29788	30026	39456	39456					-0.01357586575500136
QEQQEASL	8	Unmodified	_QEQQEASL_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MSMS	A375_MHC_IP_R1	1	466.66552734375	2	466.719621	931.42469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.59	1	44.59	44.09	45.09	0								0	0	0	0.16876	1	15565	15565		12.532	0	1		+		40527	16376	29789	30027	39457	39457					-0.04376576621177719
QEQRLQQLL	9	Unmodified	_QEQRLQQLL_					0	0	0		ENST00000542438.1_1_12:120972159-120972757:+|nuORF	ENST00000542438.1_1_12:120972159-120972757:+|nuORF	ENST00000542438.1_1_12:120972159-120972757:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	578.727294921875	2	578.327662	1154.64077	-0.22973	-0.00013286	0.16548	9.5702E-05	-0.064248	-3.7157E-05	578.3276013267753	59.016	0.50879	59.016	58.736	59.245	0					14	9	2	0	0	0	0.1915	1	21264	21264		49.933	0	1	2317500			40528	13299	29790	30028	39458	39458					0.06963604283328095
QEQSVLDQL	9	Unmodified	_QEQSVLDQL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R2	2	529.9619140625	2	530.269478	1058.5244	-0.50968	-0.00027027	-0.27478	-0.00014571	-0.78446	-0.00041598	530.2693423621587	43.045	0.40395	43.818	43.573	43.977	0.7724					13	7	2	0	0	0	0.60917	1	16050	16050		19.257	0	1	1386600			40529	14788	29791	30029	39459	39459					-0.0025175900723297673
QEQYLYESY	9	Unmodified	_QEQYLYESY_					0	0	0			REV__ENST00000557184.1_1_14:54976944-54997777:+|nuORF	REV__ENST00000557184.1_1_14:54976944-54997777:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	611.6744995117188	2	611.766768	1221.51898	-0.24199	-0.00014804	0.0033235	2.0332E-06	-0.23866	-0.00014601	611.7667776997431	70.99	0.66527	70.99	70.545	71.211	0					32	12	4	0	0	0	0.70307	1	25621	25621		6.7232	0.51738	1	3076100	+		40530	17099	29792	30030	39460	39460					-0.08291482589697807
QERDPSKIKW	10	Unmodified	_QERDPSKIKW_					0	0	0		ENSG00000111640|ENST00000229239|GAPDH;nc|ENSG00000111640|P04406-2|GAPDH	ENSG00000111640|ENST00000229239|GAPDH	ENSG00000111640|ENST00000229239|GAPDH	MULTI-MSMS	A375_MHC_IP_R1	1	429.96649169921875	3	429.566571	1285.67788	-0.47108	-0.00020236	-0.15648	-6.722E-05	-0.62757	-0.00026958	429.56648040079875	26.569	0.45696	26.569	26.322	26.779	0					23	8	4	0	0	0	0.0088303	1	7919	7919		129.39	73.549	1	14007000			40531	3003	29793	30031	39461	39461					0.04647275829074715
QERDPSKIKW	10	Unmodified	_QERDPSKIKW_					0	0	0		ENSG00000111640|ENST00000229239|GAPDH;nc|ENSG00000111640|P04406-2|GAPDH	ENSG00000111640|ENST00000229239|GAPDH	ENSG00000111640|ENST00000229239|GAPDH	MULTI-MSMS	A375_MHC_IP_R2	2	429.9660339355469	3	429.566571	1285.67788	-0.65352	-0.00028073	-0.14762	-6.3412E-05	-0.80114	-0.00034414	429.56652068364565	25.913	0.45823	26.573	26.347	26.805	0.65992					23	8	4	0	0	0	0.011451	1	8712	8712		119.6	70.443	1	13896000			40532	3003	29793	30031	39462	39462					0.04647275829074715
QERDSLRHL	9	Unmodified	_QERDSLRHL_					0	0	0			REV__ENST00000571750.5_1_16:74660451-74662408:-|nuORF	REV__ENST00000571750.5_1_16:74660451-74662408:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	385.6501770019531	3	385.207266	1152.59997	-0.14589	-5.6198E-05	-1.9545	-0.00075288	-2.1004	-0.00080908	385.20675740048745	48.581	0.40363	49.338	49.03	49.434	0.75737					9	7	2	0	0	0	0.80005	1	18227	18227		2.7352	1.9587	1	672670	+		40533	26283	29794	30032	39463	39463					0.029772629636909187
QERDYFRYY	9	Unmodified	_QERDYFRYY_					0	0	0		ENSG00000086619|ENST00000354619|ERO1B;nc|ENSG00000086619|Q86YB8-2|ERO1B	ENSG00000086619|ENST00000354619|ERO1B	ENSG00000086619|ENST00000354619|ERO1B	MULTI-MSMS	A375_MHC_IP_R1	1	447.6070251464844	3	447.207043	1338.5993	0.27979	0.00012513	-0.3508	-0.00015688	-0.071008	-3.1755E-05	447.20693067140684	48.35	0.50624	48.35	48.173	48.679	0					15	9	2	0	0	0	0.26911	1	17084	17084		32.898	23.134	1	3923600			40534	1841	29795	30033	39464	39464					-0.056455764759903104
QERDYFRYY	9	Unmodified	_QERDYFRYY_					0	0	0		ENSG00000086619|ENST00000354619|ERO1B;nc|ENSG00000086619|Q86YB8-2|ERO1B	ENSG00000086619|ENST00000354619|ERO1B	ENSG00000086619|ENST00000354619|ERO1B	MULTI-SECPEP	A375_MHC_IP_R2	2	447.9407653808594	3	447.207043	1338.5993	-0.20749	-9.279E-05	-0.16043	-7.1746E-05	-0.36792	-0.00016454	447.54122538144406	47.74	0.70981	48.501	48.073	48.783	0.76128					21	13	2	0	0	0	0.76642	1	17903	17903		8.9762	8.568	1	4432800			40535	1841	29795	30033	39465	39465					-0.056455764759903104
QEREQDKCY	9	Unmodified	_QEREQDKCY_					0	0	0		ENST00000479896.1_1_10:129869671-129881167:+|nuORF;nc|ENSG00000132334|P23469-3|PTPRE;nc|ENSG00000132334|P23469-2|PTPRE;ENSG00000132334|ENST00000254667|PTPRE	ENST00000479896.1_1_10:129869671-129881167:+|nuORF	ENST00000479896.1_1_10:129869671-129881167:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	599.47119140625	2	599.761494	1197.50844	-0.47145	-0.00028276	0.69921	0.00041936	0.22776	0.0001366	600.2643139787989	87.119	0.86277	87.119	86.73	87.593	0					23	16	2	0	0	0	0.78348	1	31983	31983		4.3292	2.6766	1	1844000			40536	4394	29796	30034	39466	39466					-0.0824178851578381
QERFSPDY	8	Unmodified	_QERFSPDY_					0	0	0			REV__ENST00000302979.4_2_13:28197185-28197227:+|nuORF	REV__ENST00000302979.4_2_13:28197185-28197227:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	521.649658203125	2	521.235439	1040.45632	-0.56509	-0.00029455	-1.2801	-0.00066724	-1.8452	-0.00096178	521.2349277947991	42.126	0.61368	42.899	42.553	43.167	0.7724					20	11	3	0	0	0	0.7773	1	15554	15554		4.756	0.42677	1	2875700	+		40537	23441	29797	30035	39467	39467					-0.062285838672323734
QERHLLVKVI	10	Unmodified	_QERHLLVKVI_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MSMS	A375_MHC_IP_R2	2	617.9624633789062	2	617.885147	1233.75574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.27	1	77.011	76.511	77.511	0.74052								0	0	0	0.15465	1	28956	28956		5.7319	2.1354	1				40538	3317	29798	30036	39468	39468					0.14821333485133437
QERLEELGALW	11	Unmodified	_QERLEELGALW_					0	0	0		SPTBN5|p.Q2777Rfs*33|1|0.22|ENSG00000137877|chr15:41857606-41857609|CTGG/-|frameshift_variant;ENSG00000137877|ENST00000320955|SPTBN5	SPTBN5|p.Q2777Rfs*33|1|0.22|ENSG00000137877|chr15:41857606-41857609|CTGG/-|frameshift_variant	SPTBN5|p.Q2777Rfs*33|1|0.22|ENSG00000137877|chr15:41857606-41857609|CTGG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	672.7508544921875	2	672.351334	1342.68811	-1.116	-0.00075036	0.071943	4.8371E-05	-1.0441	-0.00070199	672.3515146947486	58.969	0.45732	59.717	59.489	59.946	0.74714					14	8	2	0	0	0	0.78118	1	22344	22344		26.268	0	1	2534500			40539	4933	29799	30037	39469	39469					0.03047838763677646
QERLIEEI	8	Unmodified	_QERLIEEI_					0	0	0		ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	MSMS	A375_MHC_IP_R1	1	515.2025756835938	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.872	1	78.872	78.372	79.372	0								0	0	0	0.16876	1	28787	28787		20.454	0	1				40540	9863	29800	30038	39470	39470					0.03709135235044414
QERLPQSQTEW	11	Unmodified	_QERLPQSQTEW_					0	0	0		ENSG00000023171|ENST00000635736|GRAMD1B;nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;nc|ENSG00000023171|Q3KR37-3|GRAMD1B;ENST00000525945.1_1_11:123484122-123493300:+|nuORF	ENSG00000023171|ENST00000635736|GRAMD1B	ENSG00000023171|ENST00000635736|GRAMD1B	MULTI-MSMS	A375_MHC_IP_R1	1	701.7410888671875	2	701.341498	1400.66844	-0.21878	-0.00015344	-0.33636	-0.0002359	-0.55514	-0.00038934	701.3410966961937	45.259	0.50454	45.259	45.081	45.585	0					17	9	3	0	0	0	0.00033207	1	15860	15860		118.81	78.574	1	2422900			40541	1072	29801	30039	39471	39471					-0.015865372471125738
QERLPQSQTEW	11	Unmodified	_QERLPQSQTEW_					0	0	0		ENSG00000023171|ENST00000635736|GRAMD1B;nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;nc|ENSG00000023171|Q3KR37-3|GRAMD1B;ENST00000525945.1_1_11:123484122-123493300:+|nuORF	ENSG00000023171|ENST00000635736|GRAMD1B	ENSG00000023171|ENST00000635736|GRAMD1B	MULTI-MATCH	A375_MHC_IP_R2	2		2	701.341498	1400.66844	-0.78507	-0.0005506	-0.34645	-0.00024298	-1.1315	-0.00079358	701.3411709506777	44.615	0.40538	45.385	45.138	45.543	0.7691	0.062605	-9.7692E-06	NaN	118.81	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1802900			40542	1072	29801	30039							-0.015865372471125738
QERQRLREME	10	Unmodified	_QERQRLREME_					0	0	0		ENSG00000122033|ENST00000381120|MTIF3	ENSG00000122033|ENST00000381120|MTIF3	ENSG00000122033|ENST00000381120|MTIF3	MSMS	A375_MHC_IP_R2	2	687.8306884765625	2	687.848967	1373.68338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.15	1	137.25	136.75	137.75	0.10643								0	0	0	0.15549	1	53840	53840		2.9952	0.49676	1				40543	3758	29802	30040	39472	39472					0.01148631349246898
QERQSRRPRRR	11	Unmodified	_QERQSRRPRRR_					0	0	0		ENST00000514738.5_1_5:31193871-31267519:+|nuORF	ENST00000514738.5_1_5:31193871-31267519:+|nuORF	ENST00000514738.5_1_5:31193871-31267519:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	763.3384399414062	2	762.938162	1523.86177	-0.84222	-0.00064257	1.1533	0.00087992	0.3111	0.00023735	762.9393662639263	133.02	0.91284	133.19	132.74	133.65	0.16487					21	17	2	0	0	0	0.73809	1	52329	52329		1.1933	0.84271	1	5021900			40544	12941	29803	30041	39473	39473					0.12079482103126793
QERRRRRWRNN	11	Unmodified	_QERRRRRWRNN_					0	0	0			REV__ENST00000578774.1_1_17:38517261-38520175:+|nuORF	REV__ENST00000578774.1_1_17:38517261-38520175:+|nuORF	MSMS	A375_MHC_IP_R1	1	813.9651489257812	2	813.949061	1625.88357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.58	1	116.58	116.08	117.08	0								0	0	0	0.1636	1	42765	42765		0	0	1		+		40545	26331	29804	30042	39474	39474					0.0956628685173655
QESALIRKL	9	Unmodified	_QESALIRKL_					0	0	0		nc|ENSG00000126602|Q12931-2|TRAP1;ENSG00000126602|ENST00000246957|TRAP1	nc|ENSG00000126602|Q12931-2|TRAP1	nc|ENSG00000126602|Q12931-2|TRAP1	MULTI-MSMS	A375_MHC_IP_R1	1	353.2659606933594	3	353.216991	1056.62914	0.058536	2.0676E-05	-0.18676	-6.5967E-05	-0.12823	-4.5292E-05	353.2168823224118	35.856	0.5596	35.856	35.676	36.236	0					13	10	2	0	0	0	0.65748	1	11983	11983		10.8	5.5026	1	1704700			40546	4052	29805	30043	39475	39475					0.10309407260001535
QESALIRKL	9	Unmodified	_QESALIRKL_					0	0	0		nc|ENSG00000126602|Q12931-2|TRAP1;ENSG00000126602|ENST00000246957|TRAP1	nc|ENSG00000126602|Q12931-2|TRAP1	nc|ENSG00000126602|Q12931-2|TRAP1	MULTI-MSMS	A375_MHC_IP_R2	2	353.2657775878906	3	353.216991	1056.62914	-0.44015	-0.00015547	0.17758	6.2725E-05	-0.26257	-9.2743E-05	353.21692766374576	34.939	0.353	35.703	35.525	35.878	0.76338					9	6	2	0	0	0	0.58268	1	12634	12634		15.739	6.1946	1	1646200			40547	4052	29805	30043	39476	39476					0.10309407260001535
QESELHSYL	9	Unmodified	_QESELHSYL_					0	0	0		nc|ENSG00000103266|Q9UNE7-2|STUB1;ENSG00000103266|ENST00000219548|STUB1;ENST00000566181.2_1_16:731229-732210:+|nuORF;ENST00000563505.5_1_16:730510-732063:+|nuORF	nc|ENSG00000103266|Q9UNE7-2|STUB1	nc|ENSG00000103266|Q9UNE7-2|STUB1	MULTI-SECPEP	A375_MHC_IP_R1	1	553.6613159179688	2	553.261653	1104.50875	-0.1178	-6.5176E-05	-0.041549	-2.2988E-05	-0.15935	-8.8164E-05	553.2614952994713	48.658	0.55729	48.658	48.375	48.933	0					25	10	3	0	0	0	0.025037	1	17178	17178		123.45	64.772	1	5061500			40548	2439	29806	30044	39477	39477					-0.039320455242886965
QESELHSYL	9	Unmodified	_QESELHSYL_					0	0	0		nc|ENSG00000103266|Q9UNE7-2|STUB1;ENSG00000103266|ENST00000219548|STUB1;ENST00000566181.2_1_16:731229-732210:+|nuORF;ENST00000563505.5_1_16:730510-732063:+|nuORF	nc|ENSG00000103266|Q9UNE7-2|STUB1	nc|ENSG00000103266|Q9UNE7-2|STUB1	MULTI-MSMS	A375_MHC_IP_R2	2	553.1748657226562	2	553.261653	1104.50875	-0.66374	-0.00036722	-0.11162	-6.1755E-05	-0.77536	-0.00042897	553.2615435509449	47.89	0.60578	48.651	48.378	48.984	0.76128					27	11	3	0	0	0	0.51106	1	18001	18001		19.257	0	1	5017600			40549	2439	29806	30044	39478	39478					-0.039320455242886965
QESEPQGHAEN	11	Unmodified	_QESEPQGHAEN_					0	0	0			REV__ENST00000550062.5_1_12:60098758-60127580:+|nuORF	REV__ENST00000550062.5_1_12:60098758-60127580:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	614.7108154296875	2	613.257631	1224.50071	-0.30976	-0.00018996	-0.36693	-0.00022502	-0.67669	-0.00041498	613.2575102319386	94.745	1.1182	95.49	95.02	96.138	0.74474					59	21	4	0	0	0	0.67989	1	35883	35883		17.113	3.2068	1	11874000	+		40550	26026	29807	30045	39479	39479					-0.10256224511681467
QESFIWVRY	9	Unmodified	_QESFIWVRY_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-SECPEP	A375_MHC_IP_R2	2	614.7108154296875	2	614.31148	1226.60841	-0.3661	-0.0002249	-0.19398	-0.00011917	-0.56008	-0.00034407	614.3114379310335	94.403	0.40538	95.147	94.869	95.274	0.74474					13	7	2	0	0	0	0.11849	1	35883	35883		79.596	48.328	1	2092100			40551	8958	29808	30046	39480	39480					0.004168168803289518
QESGEVGIDPL	11	Unmodified	_QESGEVGIDPL_					0	0	0			REV__ENST00000462189.1_1_2:74688404-74690534:-|nuORF	REV__ENST00000462189.1_1_2:74688404-74690534:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	572.6790161132812	2	572.280043	1142.54553	-0.34773	-0.000199	-2.7262	-0.0015602	-3.074	-0.0017592	572.2791355437442	87.158	0.96381	87.158	86.578	87.542	0					32	18	3	0	0	0	0.82939	1	32003	32003		23.79	3.3752	1	2074600	+		40552	17870	29809	30047	39481	39481					-0.020037936983499094
QESIQIPWL	9	Unmodified	_QESIQIPWL_					0	0	0			REV__ENST00000290246.10_1_20:44995276-44995462:-|nuORF	REV__ENST00000290246.10_1_20:44995276-44995462:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	557.6798095703125	2	557.300581	1112.58661	-0.84767	-0.00047241	0.56966	0.00031747	-0.27801	-0.00015493	557.8019831754775	80.874	0.25564	81.619	81.52	81.776	0.74474					7	4	2	0	0	0	0.72623	1	30722	30722		19.257	0	1	748660	+		40553	23353	29810	30048	39482	39482					0.03482012131757983
QESKSEVQIPY	11	Unmodified	_QESKSEVQIPY_					0	0	0		ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	MSMS	A375_MHC_IP_R2	2	654.7518920898438	2	654.327524	1306.6405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.66	1	138.74	138.24	139.24	0.083969								0	0	0	0.16213	1	54363	54363		7.609	2.7119	1				40554	2520	29811	30049	39483	39483					-0.0005586022716670414
QESLDVVVKQ	10	Unmodified	_QESLDVVVKQ_					0	0	0			REV__ENST00000593157.5_1_19:13216299-13227549:-|nuORF	REV__ENST00000593157.5_1_19:13216299-13227549:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	572.6790161132812	2	572.814053	1143.61355	-0.33376	-0.00019118	2.9661	0.001699	2.6324	0.0015079	573.3167987164495	87.245	0.30708	87.245	87.083	87.39	0					6	5	2	0	0	0	0.88918	1	32003	32003		8.7454	0	1	1166700	+		40555	17351	29812	30050	39484	39484					0.04749075952304338
QESLHIKME	9	Unmodified	_QESLHIKME_					0	0	0		ENSG00000122386|ENST00000219091|ZNF205	ENSG00000122386|ENST00000219091|ZNF205	ENSG00000122386|ENST00000219091|ZNF205	MULTI-SECPEP	A375_MHC_IP_R2	2	557.6798095703125	2	557.781699	1113.54884	-0.81041	-0.00045203	0.2813	0.00015691	-0.52911	-0.00029513	558.283713370248	80.892	0.96838	81.637	81.112	82.08	0.74474					25	18	2	0	0	0	0.60917	1	30722	30722		19.257	6.2145	1	3780300			40556	3778	29813	30051	39485	39485					-0.0033882212535445433
QESLSNRV	8	Unmodified	_QESLSNRV_					0	0	0			REV__ENST00000305963.2_1_X:135046468-135046597:-|nuORF	REV__ENST00000305963.2_1_X:135046468-135046597:-|nuORF	MSMS	A375_MHC_IP_R2	2	466.65838623046875	2	466.743431	931.472308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.686	1	88.417	87.917	88.917	0.7318								0	0	0	0.16876	1	33354	33354		19.257	1.122	1		+		40557	23463	29814	30052	39486	39486					0.003831223696693087
QESLVRSDEAQ	11	Unmodified	_QESLVRSDEAQ_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	A375_MHC_IP_R1	1	630.7687377929688	2	631.304581	1260.59461	-0.56248	-0.00035509	0.079764	5.0355E-05	-0.48271	-0.00030474	631.8057935630804	81.808	0.50567	81.808	81.556	82.062	0					13	9	2	0	0	0	0.98303	1	29823	29823		12.873	7.5757	1	1271100	+		40558	18428	29815	30053	39487	39487					-0.025265054094234074
QESNVQLKL	9	Unmodified	_QESNVQLKL_					0	0	0		nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10;nc|ENSG00000164402|Q92599-3|SEPTIN8;ENSG00000154997|ENST00000388975|SEPTIN14;ENST00000481794.5_1_5:132099854-132112889:-|nuORF;ENST00000371478.2_1_5:132097291-132101152:-|nuORF;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENST00000481794.5_1_5:132099854-132112889:-|nuORF	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	MULTI-SECPEP	A375_MHC_IP_R2	2	530.1950073242188	2	529.795663	1057.57677	-0.48172	-0.00025521	-1.4731	-0.00078045	-1.9548	-0.0010357	529.7955217983068	47.895	1.0095	48.656	48.326	49.336	0.76128					26	19	2	0	0	0	0.71341	1	18011	18011		13.042	1.5478	1	2584100			40559	8757;6835	29816	30054	39488	39488					0.05028824126384279
QESPGAPSRTY	11	Unmodified	_QESPGAPSRTY_					0	0	0		ENSG00000114023|ENST00000477892|FAM162A	ENSG00000114023|ENST00000477892|FAM162A	ENSG00000114023|ENST00000477892|FAM162A	MSMS	A375_MHC_IP_R1	1	596.6923828125	2	596.783284	1191.55202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.358	1	21.358	20.858	21.858	0								0	0	0	0.15674	1	5606	5606		16.275	6.124	1				40560	3191	29817	30055	39489	39489					-0.036098557469813386
QESPGAPSRTY	11	Unmodified	_QESPGAPSRTY_					0	0	0		ENSG00000114023|ENST00000477892|FAM162A	ENSG00000114023|ENST00000477892|FAM162A	ENSG00000114023|ENST00000477892|FAM162A	MSMS	A375_MHC_IP_R2	2	596.6920166015625	2	596.783284	1191.55202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.861	1	20.471	19.971	20.971	0.61029								0	0	0	0.14128	1	6135	6135		25.997	7.851	1				40561	3191	29817	30055	39490	39490					-0.036098557469813386
QESPSHLLEE	10	Unmodified	_QESPSHLLEE_					0	0	0		ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	MSMS	A375_MHC_IP_R2	2	584.6979370117188	2	584.777667	1167.54078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.264	1	42.039	41.539	42.539	0.77451								0	0	0	0.14804	1	15305	15305		21.537	4.4241	1				40562	1635	29818	30056	39491	39491					-0.036286778411067644
QESRAPLRGE	10	Unmodified	_QESRAPLRGE_					0	0	0			REV__nc|ENSG00000187239|Q96RU3-4|FNBP1	REV__nc|ENSG00000187239|Q96RU3-4|FNBP1	MSMS	A375_MHC_IP_R2	2	571.7257690429688	2	571.799269	1141.58398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.36	1	113.08	112.58	113.58	0.72458								0	0	0	0.1502	1	42358	42358		17.443	1.5955	1		+		40563	22014	29819	30057	39492	39492					0.018855567268019513
QESRVSEIHSL	11	Unmodified	_QESRVSEIHSL_					0	0	0		ENSG00000145819|ENST00000645722|ARHGAP26;nc|ENSG00000145819|Q9UNA1|ARHGAP26	ENSG00000145819|ENST00000645722|ARHGAP26	ENSG00000145819|ENST00000645722|ARHGAP26	MSMS	A375_MHC_IP_R2	2	428.93853759765625	3	428.889603	1283.64698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.384	1	24.014	23.514	24.514	0.63014								0	0	0	0.16124	1	7512	7512		12.228	1.3286	1				40564	5585	29820	30058	39493	39493					0.016500777242072218
QESSSWADAI	10	Unmodified	_QESSSWADAI_					0	0	0			REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2	REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-MSMS	A375_MHC_IP_R1	1	547.1743774414062	2	547.24346	1092.47237	-0.77152	-0.00042221	0.084925	4.6475E-05	-0.6866	-0.00037574	547.2433421512965	26.929	0.34898	26.929	26.779	27.128	0					10	6	2	0	0	0	0.70329	1	8098	8098		10.824	0	1	2959600	+		40565	17464	29821	30059	39494	39494					-0.07016922420984884
QESVLPTEG	9	Unmodified	_QESVLPTEG_					0	0	0			REV__CLEC14A|p.P334S|1|0.19|ENSG00000176435|chr14:38255023-38255023|G/A|missense_variant	REV__CLEC14A|p.P334S|1|0.19|ENSG00000176435|chr14:38255023-38255023|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	479.9233093261719	2	480.237647	958.460741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.95	1	141.98	141.48	142.48	0.030731								0	0	0	0.15486	1	55504	55504		3.2813	0.70383	1		+		40566	15799	29822	30060	39495	39495					-0.020151194443315035
QESYQTAQQ	9	Unmodified	_QESYQTAQQ_					0	0	0			REV__ENST00000583438.1_1_18:9562972-9563050:-|nuORF	REV__ENST00000583438.1_1_18:9562972-9563050:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	542.171630859375	2	541.741085	1081.46762	-1.0664	-0.00057773	1.0126	0.00054857	-0.053844	-2.9169E-05	541.741554771977	35.235	0.4048	35.998	35.727	36.132	0.76338					9	6	2	0	0	0	0.71341	1	12772	12772		8.7454	0	1	1345500	+		40567	23336	29823	30061	39496	39496					-0.06985806563761798
QETAYERLY	9	Unmodified	_QETAYERLY_					0	0	0		nc|ENSG00000133103|Q9Y2V7-2|COG6;ENSG00000133103|ENST00000455146|COG6	nc|ENSG00000133103|Q9Y2V7-2|COG6	nc|ENSG00000133103|Q9Y2V7-2|COG6	MULTI-MSMS	A375_MHC_IP_R2	2	587.2130737304688	2	586.782753	1171.55095	-0.58039	-0.00034056	1.3664	0.00080177	0.78599	0.00046121	586.7833081476173	45.462	0.25238	46.227	46.15	46.403	0.76519					8	4	2	0	0	0	0.32889	1	17003	17003		28.495	5.7582	1	850220			40568	4485	29824	30062	39497	39497					-0.0279607011589178
QETDVRAQI	9	Unmodified	_QETDVRAQI_					0	0	0		ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;RAD50|p.K596Efs*12|1|0.13|ENSG00000113522|chr5:132592026-132592027|-/GAGAAACAACTCAAGAGGGAGAAATATAT|frameshift_variant	ENSG00000113522|ENST00000378823|RAD50	ENSG00000113522|ENST00000378823|RAD50	MULTI-SECPEP	A375_MHC_IP_R1	1	530.6751098632812	2	530.275095	1058.53564	-0.53931	-0.00028598	0.91086	0.00048301	0.37155	0.00019702	530.2757729889785	31.662	0.91876	31.662	31.414	32.333	0					22	17	2	0	0	0	0.03109	1	10140	10140		92.653	36.476	1	2549600			40569	3158	29825	30063	39498	39498					0.008710630869245506
QETDVRAQI	9	Unmodified	_QETDVRAQI_					0	0	0		ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;RAD50|p.K596Efs*12|1|0.13|ENSG00000113522|chr5:132592026-132592027|-/GAGAAACAACTCAAGAGGGAGAAATATAT|frameshift_variant	ENSG00000113522|ENST00000378823|RAD50	ENSG00000113522|ENST00000378823|RAD50	MULTI-MSMS	A375_MHC_IP_R2	2	530.6748046875	2	530.275095	1058.53564	-0.63564	-0.00033706	0.75882	0.00040238	0.12319	6.5322E-05	530.2756139122508	30.942	0.7645	31.661	31.467	32.231	0.71857					23	14	2	0	0	0	0.02559	1	10935	10935		78.728	26.46	1	3663000			40570	3158	29825	30063	39499	39499					0.008710630869245506
QETFVYEM	8	Unmodified	_QETFVYEM_					0	0	0		ENST00000461041.1_1_9:15423144-15433670:+|nuORF;ENSG00000164975|ENST00000380821|SNAPC3	ENST00000461041.1_1_9:15423144-15433670:+|nuORF	ENST00000461041.1_1_9:15423144-15433670:+|nuORF	MSMS	A375_MHC_IP_R1	1	523.6671752929688	2	523.7286	1045.44265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.628	1	35.628	35.128	36.128	0								0	0	0	0.16876	1	11864	11864		21.747	0.87544	1				40571	6900	29826	30064	39500	39500					-0.07825577690709906
QETHSSAAVPC	11	Unmodified	_QETHSSAAVPC_					0	0	0		ENST00000259708.7_1_6:43027633-43027921:+|nuORF;ENST00000460283.1_2_6:43027633-43029102:+|nuORF	ENST00000259708.7_1_6:43027633-43027921:+|nuORF	ENST00000259708.7_1_6:43027633-43027921:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	565.1690673828125	2	565.250763	1128.48697	-0.42485	-0.00024014	0.60741	0.00034334	0.18256	0.00010319	565.2510580884036	59.168	0.91576	59.168	58.836	59.752	0					48	17	4	0	0	0	0.69231	1	21464	21464		16.149	0.30192	1	40616000			40572	10262	29827	30065	39501	39501					-0.07213173544482743
QETIENDF	8	Unmodified	_QETIENDF_					0	0	0		ENSG00000149488|ENST00000358864|TMC2	ENSG00000149488|ENST00000358864|TMC2	ENSG00000149488|ENST00000358864|TMC2	MSMS	A375_MHC_IP_R1	1	498.22967529296875	2	498.219454	994.424355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.084	1	55.084	54.584	55.584	0								0	0	0	0.16876	1	19690	19690		12.532	3.1841	1				40573	5809	29828	30066	39502	39502					-0.07307996341046419
QETLLLLLLD	10	Unmodified	_QETLLLLLLD_					0	0	0			REV__ENSG00000120451|ENST00000265909|SNX19;REV__ENST00000526579.5_1_11:130748389-130775881:-|nuORF	REV__ENSG00000120451|ENST00000265909|SNX19	MULTI-MSMS	A375_MHC_IP_R2	2	391.26446533203125	3	390.90419	1169.69074	-0.10631	-4.1559E-05	0.99446	0.00038874	0.88815	0.00034718	391.2389910757295	42.674	0.40591	43.446	43.218	43.623	0.7724					11	7	2	0	0	0	0.71361	1	15918	15918		3.3196	0	1	2487700	+		40574	18123;25774	29829	30067	39503	39503					0.11268294168644388
QETLLLLLLD	10	Unmodified	_QETLLLLLLD_					0	0	0			REV__ENSG00000120451|ENST00000265909|SNX19;REV__ENST00000526579.5_1_11:130748389-130775881:-|nuORF	REV__ENSG00000120451|ENST00000265909|SNX19	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	390.90419	1169.69074	0.2247	8.7837E-05	0.82505	0.00032252	1.0498	0.00041035	390.90447675888464	43.595	0.45698	43.595	43.351	43.808	0	0.07404	-7.8017E-05	NaN	3.3196	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2044900	+		40575	18123;25774	29829	30067							0.11268294168644388
QETLQRKY	8	Unmodified	_QETLQRKY_					0	0	0			REV__ENSG00000171316|ENST00000423902|CHD7	REV__ENSG00000171316|ENST00000423902|CHD7	MULTI-SECPEP	A375_MHC_IP_R1	1	355.4599304199219	3	355.861096	1064.56146	0.13025	4.6352E-05	-0.56949	-0.00020266	-0.43924	-0.00015631	355.8609885267306	35.307	0.30501	35.307	35.116	35.421	0					8	5	2	0	0	0	0.972	1	11651	11651		3.5965	0	1	1357400	+		40576	21060	29830	30068	39504	39504					0.03175957329199264
QETLVGAHNF	10	Unmodified	_QETLVGAHNF_					0	0	0		ENST00000608176.5_1_X:11129009-11129099:-|nuORF	ENST00000608176.5_1_X:11129009-11129099:-|nuORF	ENST00000608176.5_1_X:11129009-11129099:-|nuORF	MSMS	A375_MHC_IP_R2	2	558.1887817382812	2	558.277638	1114.54072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.603	1	56.354	55.854	56.854	0.75075								0	0	0	0.14925	1	21008	21008		19.257	2.3147	1				40577	13925	29831	30069	39505	39505					-0.01196633050494711
QETPDHAIFRW	11	Unmodified	_QETPDHAIFRW_					0	0	0		ENSG00000106624|ENST00000223357|AEBP1;nc|ENSG00000106624|Q8IUX7-2|AEBP1	ENSG00000106624|ENST00000223357|AEBP1;nc|ENSG00000106624|Q8IUX7-2|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	MULTI-MSMS	A375_MHC_IP_R1	1	467.6300964355469	3	467.229959	1398.66805	-0.26382	-0.00012326	0.44157	0.00020631	0.17775	8.3052E-05	467.230278556346	68.748	0.40456	68.748	68.565	68.969	0					14	7	3	0	0	0	0.57632	1	24957	24957		25.155	21.038	1	2453000			40578	2703;14529	29832	30070	39506	39506					-0.015339121763190633
QETPDHAIFRW	11	Unmodified	_QETPDHAIFRW_					0	0	0		ENSG00000106624|ENST00000223357|AEBP1;nc|ENSG00000106624|Q8IUX7-2|AEBP1	ENSG00000106624|ENST00000223357|AEBP1;nc|ENSG00000106624|Q8IUX7-2|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	MULTI-MSMS	A375_MHC_IP_R2	2	467.6295471191406	3	467.229959	1398.66805	-0.54674	-0.00025545	0.16899	7.8956E-05	-0.37775	-0.0001765	467.230054002853	68.004	0.40756	68.739	68.51	68.918	0.73511					16	7	3	0	0	0	0.57632	1	25802	25802		25.155	22.312	1	1732300			40579	2703;14529	29832	30070	39507	39507					-0.015339121763190633
QETPLLHHF	9	Unmodified	_QETPLLHHF_					0	0	0		ENSG00000198753|ENST00000361971|PLXNB3	ENSG00000198753|ENST00000361971|PLXNB3	ENSG00000198753|ENST00000361971|PLXNB3	MULTI-SECPEP	A375_MHC_IP_R1	1	374.929443359375	3	374.529458	1120.56654	0.77364	0.00028975	-0.56508	-0.00021164	0.20856	7.8113E-05	374.52922630078285	45.181	0.50557	45.181	44.928	45.434	0					21	9	3	0	0	0	0.69507	1	15844	15844		19.257	9.8739	1	2386500			40580	9317	29833	30071	39508	39508					0.011082611918027396
QETPLLHHF	9	Unmodified	_QETPLLHHF_					0	0	0		ENSG00000198753|ENST00000361971|PLXNB3	ENSG00000198753|ENST00000361971|PLXNB3	ENSG00000198753|ENST00000361971|PLXNB3	MULTI-SECPEP	A375_MHC_IP_R2	2	374.9294738769531	3	374.529458	1120.56654	0.40108	0.00015022	-0.0049135	-1.8402E-06	0.39617	0.00014838	374.52939614776574	44.288	0.50645	45.057	44.732	45.239	0.7691					19	9	3	0	0	0	0.75164	1	16557	16557		9.3831	3.6513	1	2499700			40581	9317	29833	30071	39509	39509					0.011082611918027396
QETPLPRSW	9	Unmodified	_QETPLPRSW_					0	0	0		ENSG00000010017|ENST00000011619|RANBP9;ENST00000602525.5_1_16:67765330-67840439:-|nuORF;nc|ENSG00000141084|Q6VN20-3|RANBP10;ENSG00000141084|ENST00000317506|RANBP10	ENSG00000010017|ENST00000011619|RANBP9;nc|ENSG00000141084|Q6VN20-3|RANBP10	ENSG00000010017|ENST00000011619|RANBP9	MULTI-MSMS	A375_MHC_IP_R1	1	557.687744140625	2	557.288005	1112.56146	-0.4218	-0.00023506	-0.24317	-0.00013551	-0.66497	-0.00037058	557.2879366154593	56.217	0.80921	56.217	55.841	56.65	0					41	15	4	0	0	0	0.074562	2	20108	20108;20110		55.235	30.561	1	5514100			40582	972;5213	29834	30072	39510;39511	39510					0.009679573291805355
QETREILHF	9	Unmodified	_QETREILHF_					0	0	0		ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	MULTI-SECPEP	A375_MHC_IP_R1	1	391.9403991699219	3	391.540134	1171.59857	0.11262	4.4095E-05	0.29833	0.00011681	0.41095	0.0001609	391.5402567527331	50.36	1.0187	50.36	49.998	51.017	0					50	19	5	0	0	0	0.01091	1	17799	17799		107.1	59.027	1	27389000			40583	9034	29835	30073	39512	39512					0.019636288749325104
QETREILHF	9	Unmodified	_QETREILHF_					0	0	0		ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	MULTI-SECPEP	A375_MHC_IP_R1	1	587.2059936523438	2	586.806562	1171.59857	-0.29683	-0.00017418	0.0066212	3.8853E-06	-0.29021	-0.0001703	586.8066160998717	50.352	0.71412	50.352	50.049	50.764	0					33	13	4	0	0	0	0.20645	1	17811	17811		47.749	13.347	1	7845600			40584	9034	29835	30073	39513	39513					0.019636288749325104
QETREILHF	9	Unmodified	_QETREILHF_					0	0	0		ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	MULTI-MSMS	A375_MHC_IP_R2	2	587.7086181640625	2	586.806562	1171.59857	-0.84188	-0.00049402	0.44762	0.00026267	-0.39426	-0.00023135	586.806610023214	49.431	0.70836	50.188	49.843	50.551	0.75737					29	13	3	0	0	0	0.21241	1	18558	18558		32.786	0.4802	1	7736300			40585	9034	29835	30073	39514	39514					0.019636288749325104
QETREILHF	9	Unmodified	_QETREILHF_					0	0	0		ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	MULTI-SECPEP	A375_MHC_IP_R2	2	392.2742004394531	3	391.540134	1171.59857	-0.46802	-0.00018325	0.48058	0.00018816	0.012557	4.9165E-06	391.54030696379044	49.465	0.70822	50.223	49.894	50.602	0.75737					46	13	5	0	0	0	0.047455	1	18531	18531		61.602	46.353	1	36668000			40586	9034	29835	30073	39515	39515					0.019636288749325104
QETSFTKEAY	10	Unmodified	_QETSFTKEAY_					0	0	0		ENST00000533567.5_1_13:45912892-45914385:-|nuORF;nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1	ENST00000533567.5_1_13:45912892-45914385:-|nuORF	ENST00000533567.5_1_13:45912892-45914385:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	602.6798095703125	2	602.280043	1202.54553	-0.55422	-0.0003338	0.054816	3.3014E-05	-0.49941	-0.00030078	602.2800638871987	32.861	1.0126	32.861	32.535	33.547	0					54	19	5	0	0	0	0.024337	1	10639	10639		135.86	135.86	1	189090000			40587	4488	29836	30074	39516	39516					-0.04763793698361951
QETSFTKEAY	10	Unmodified	_QETSFTKEAY_					0	0	0		ENST00000533567.5_1_13:45912892-45914385:-|nuORF;nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1	ENST00000533567.5_1_13:45912892-45914385:-|nuORF	ENST00000533567.5_1_13:45912892-45914385:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	602.6674194335938	2	602.280043	1202.54553	-0.49681	-0.00029922	-0.072216	-4.3494E-05	-0.56902	-0.00034271	602.2799892402313	32.198	1.1187	32.935	32.654	33.773	0.73691					60	21	5	0	0	0	2.8606E-06	1	11438	11438		195.04	142.77	1	185750000			40588	4488	29836	30074	39517	39517					-0.04763793698361951
QETVPKASF	9	Unmodified	_QETVPKASF_					0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-SECPEP	A375_MHC_IP_R1	1	504.16351318359375	2	503.763832	1005.51311	-0.67155	-0.0003383	0.68959	0.00034739	0.018038	9.0871E-06	503.76407649171836	38.393	0.4089	38.393	38.168	38.577	0					18	7	3	0	0	0	0.16595	1	13007	13007		53.404	15.228	1	7492600			40589	3668	29837	30075	39518	39518					0.010574636892783928
QETVPKASF	9	Unmodified	_QETVPKASF_					0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-SECPEP	A375_MHC_IP_R2	2	504.16314697265625	2	503.763832	1005.51311	-0.91337	-0.00046012	0.95632	0.00048176	0.042951	2.1637E-05	503.76442318030513	37.619	0.61618	38.393	38.174	38.79	0.77357					23	11	3	0	0	0	0.34746	1	13777	13777		19.362	13.156	1	6984900			40590	3668	29837	30075	39519	39519					0.010574636892783928
QETYGGHATL	10	Unmodified	_QETYGGHATL_					0	0	0			REV__ENST00000303407.11_3_9:136896057-136896471:-|nuORF	REV__ENST00000303407.11_3_9:136896057-136896471:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	538.0088500976562	2	538.753995	1075.49344	-0.58191	-0.00031351	0.6491	0.0003497	0.067188	3.6198E-05	538.7543259428185	62.155	1.7912	62.155	61.686	63.477	0					59	34	2	0	0	0	0.85226	1	22479	22479		10.074	2.1638	1	2431500	+		40591	23446	29838	30076	39520	39520					-0.04128912321448297
QETYGGHATL	10	Unmodified	_QETYGGHATL_					0	0	0			REV__ENST00000303407.11_3_9:136896057-136896471:-|nuORF	REV__ENST00000303407.11_3_9:136896057-136896471:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	538.168212890625	2	538.753995	1075.49344	-1.123	-0.00060501	-0.10583	-5.7016E-05	-1.2288	-0.00066202	538.7543115012202	61.723	1.5169	62.467	61.818	63.335	0.74409					42	29	3	0	0	0	0.85226	1	23255	23255		6.2058	4.7239	1	2060700	+		40592	23446	29838	30076	39521	39521					-0.04128912321448297
QEVDDYHAF	9	Unmodified	_QEVDDYHAF_					0	0	0		ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1;ENST00000438277.5_1_2:128855105-128928859:+|nuORF	ENSG00000136731|ENST00000259253|UGGT1	ENSG00000136731|ENST00000259253|UGGT1	MULTI-SECPEP	A375_MHC_IP_R2	2	562.6383056640625	2	562.238178	1122.4618	-0.42288	-0.00023776	-0.21636	-0.00012165	-0.63924	-0.00035941	562.2382354913536	46.581	0.45903	47.346	47.108	47.567	0.76519					13	8	2	0	0	0	0.24479	1	17500	17500		26.884	19.594	1	2235800			40593	4810	29839	30077	39522	39522					-0.09452905075431772
QEVDFFQRY	9	Unmodified	_QEVDFFQRY_					0	0	0		ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-MSMS	A375_MHC_IP_R1	1	616.6902465820312	2	616.290745	1230.56694	-0.43306	-0.00026689	-1.1351	-0.00069955	-1.5681	-0.00096644	616.2905416504764	76.82	0.91528	76.82	76.319	77.235	0					48	17	5	0	0	0	0.0022058	2	27966	27966;28014		142.08	90.45	1	12802000			40594	5794	29840	30078	39523;39524	39523					-0.03912363878976066
QEVDFFQRY	9	Unmodified	_QEVDFFQRY_					0	0	0		ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-MSMS	A375_MHC_IP_R2	2	616.6900024414062	2	616.290745	1230.56694	-0.62622	-0.00038593	-0.85814	-0.00052887	-1.4844	-0.0009148	616.2906948976686	76.087	0.81316	76.827	76.385	77.199	0.74052					50	15	5	0	0	0	0.0022058	1	28862	28862		142.08	90.45	1	13388000			40595	5794	29840	30078	39525	39525					-0.03912363878976066
QEVENFFTF	9	Unmodified	_QEVENFFTF_					0	0	0		nc|ENSG00000107745|Q9BPX6-2|MICU1;ENSG00000107745|ENST00000361114|MICU1;nc|ENSG00000107745|Q9BPX6-3|MICU1;nc|ENSG00000107745|Q9BPX6-6|MICU1;nc|ENSG00000107745|Q9BPX6-5|MICU1;nc|ENSG00000107745|Q9BPX6-4|MICU1	nc|ENSG00000107745|Q9BPX6-2|MICU1	nc|ENSG00000107745|Q9BPX6-2|MICU1	MULTI-MSMS	A375_MHC_IP_R1	1	581.1668090820312	2	580.766571	1159.51859	-0.036667	-2.1295E-05	0.33031	0.00019183	0.29364	0.00017054	580.7668918506105	128.15	0.20354	128.15	128.02	128.23	0					8	3	3	0	0	0	0.0070829	1	49220	49220		131.27	94.761	1	9480000			40596	2756	29841	30079	39526	39526					-0.05478857518892255
QEVENFFTF	9	Unmodified	_QEVENFFTF_					0	0	0		nc|ENSG00000107745|Q9BPX6-2|MICU1;ENSG00000107745|ENST00000361114|MICU1;nc|ENSG00000107745|Q9BPX6-3|MICU1;nc|ENSG00000107745|Q9BPX6-6|MICU1;nc|ENSG00000107745|Q9BPX6-5|MICU1;nc|ENSG00000107745|Q9BPX6-4|MICU1	nc|ENSG00000107745|Q9BPX6-2|MICU1	nc|ENSG00000107745|Q9BPX6-2|MICU1	MULTI-MSMS	A375_MHC_IP_R2	2	581.1663208007812	2	580.766571	1159.51859	-0.36191	-0.00021018	0.27772	0.00016129	-0.084181	-4.8889E-05	580.7667772590611	127.88	0.3038	128.15	128.02	128.32	0.26593					8	5	2	0	0	0	0.0015808	1	50207	50207		155.03	105.47	1	11337000			40597	2756	29841	30079	39527	39527					-0.05478857518892255
QEVERILYF	9	Unmodified	_QEVERILYF_					0	0	0		ENSG00000165097|ENST00000650836|KDM1B;nc|ENSG00000165097|Q8NB78-2|KDM1B	ENSG00000165097|ENST00000650836|KDM1B	ENSG00000165097|ENST00000650836|KDM1B	MULTI-SECPEP	A375_MHC_IP_R1	1	599.2188110351562	2	598.819138	1195.62372	-0.16489	-9.874E-05	0.11391	6.8213E-05	-0.050978	-3.0527E-05	598.8191132768791	92.461	0.60893	92.461	92.16	92.769	0					24	11	3	0	0	0	0.050514	1	33964	33964		114.2	59.428	1	3563900			40598	6911	29842	30080	39528	39528					0.033736836775233314
QEVERILYF	9	Unmodified	_QEVERILYF_					0	0	0		ENSG00000165097|ENST00000650836|KDM1B;nc|ENSG00000165097|Q8NB78-2|KDM1B	ENSG00000165097|ENST00000650836|KDM1B	ENSG00000165097|ENST00000650836|KDM1B	MULTI-SECPEP	A375_MHC_IP_R2	2	599.2191162109375	2	598.819138	1195.62372	-0.4475	-0.00026797	-0.29499	-0.00017664	-0.74249	-0.00044462	598.8188709938087	91.682	0.70951	92.417	92.122	92.831	0.7345					19	13	2	0	0	0	0.033115	1	34869	34869		128.93	98.296	1	4574500			40599	6911	29842	30080	39529	39529					0.033736836775233314
QEVETSVTY	9	Unmodified	_QEVETSVTY_					0	0	0		ENST00000514123.5_1_16:69458586-69482095:+|nuORF;ENSG00000103018|ENST00000307892|CYB5B	ENST00000514123.5_1_16:69458586-69482095:+|nuORF	ENST00000514123.5_1_16:69458586-69482095:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	528.647705078125	2	528.248212	1054.48187	-0.60902	-0.00032171	-1.8469	-0.00097563	-2.4559	-0.0012973	528.2468271643381	46.615	0.85867	46.615	45.992	46.85	0					27	16	2	0	0	0	0.24324	1	16402	16402		45.7	26.443	1	2624500			40600	2410	29843	30081	39530	39530					-0.04319154135464487
QEVETSVTY	9	Unmodified	_QEVETSVTY_					0	0	0		ENST00000514123.5_1_16:69458586-69482095:+|nuORF;ENSG00000103018|ENST00000307892|CYB5B	ENST00000514123.5_1_16:69458586-69482095:+|nuORF	ENST00000514123.5_1_16:69458586-69482095:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	528.6978149414062	2	528.248212	1054.48187	-0.46328	-0.00024473	-0.46935	-0.00024793	-0.93263	-0.00049266	528.2480447372155	46.015	0.55537	46.78	46.503	47.058	0.76519					16	10	2	0	0	0	0.04447	1	17212	17212		66.457	20.436	1	4182100			40601	2410	29843	30081	39531	39531					-0.04319154135464487
QEVFEKATF	9	Unmodified	_QEVFEKATF_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-SECPEP	A375_MHC_IP_R1	1	550.1763305664062	2	549.776939	1097.53933	-0.51703	-0.00028425	-0.85121	-0.00046798	-1.3682	-0.00075223	549.7774145879797	55.508	1.2704	55.508	54.873	56.143	0					48	24	3	0	0	0	0.11849	1	19915	19915		61.602	32.52	1	10970000			40602	3266	29844	30082	39532	39532					-0.005542671392504417
QEVFEKATF	9	Unmodified	_QEVFEKATF_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-SECPEP	A375_MHC_IP_R2	2	550.1766357421875	2	549.776939	1097.53933	-0.95371	-0.00052433	-0.45545	-0.0002504	-1.4092	-0.00077473	549.7773829089932	54.788	1.2187	55.539	54.865	56.084	0.75075					55	23	4	0	0	0	0.11849	1	20729	20729		45.74	23.004	1	9968900			40603	3266	29844	30082	39533	39533					-0.005542671392504417
QEVFETNVF	9	Unmodified	_QEVFETNVF_					0	0	0		ENST00000485405.5_1_1:162760500-162767724:+|nuORF;nc|ENSG00000132196|P56937-3|HSD17B7;ENSG00000132196|ENST00000254521|HSD17B7;ENST00000367913.1_1_1:162766451-162767724:+|nuORF;nc|ENSG00000132196|P56937-2|HSD17B7	ENST00000485405.5_1_1:162760500-162767724:+|nuORF	ENST00000485405.5_1_1:162760500-162767724:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	557.1196899414062	2	556.766571	1111.51859	-0.49086	-0.00027329	0.27583	0.00015357	-0.21503	-0.00011972	556.7667535624829	102.13	0.25469	102.13	101.9	102.15	0					7	4	2	0	0	0	0.11629	1	37536	37536		47.749	15.443	1	1024800			40604	4380	29845	30083	39534	39534					-0.03270857518896264
QEVFRFAYY	9	Unmodified	_QEVFRFAYY_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MSMS	A375_MHC_IP_R1	1	612.1976318359375	2	611.798206	1221.58186	-0.5804	-0.00035509	0.077162	4.7208E-05	-0.50324	-0.00030788	611.7980727016047	90.656	0.50948	90.656	90.387	90.896	0					15	8	2	0	0	0	0.018261	1	33346	33346		85.642	45.684	1	1579800			40605	3476	29846	30084	39535	39535					-0.020068720109975402
QEVFRFAYY	9	Unmodified	_QEVFRFAYY_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-SECPEP	A375_MHC_IP_R2	2	612.1981201171875	2	611.798206	1221.58186	-0.42276	-0.00025864	-0.11453	-7.0072E-05	-0.53729	-0.00032871	611.7982529122514	89.918	0.45952	90.65	90.493	90.953	0.7318					12	8	2	0	0	0	0.23313	1	34296	34296		62.573	28.47	1	1341100			40606	3476	29846	30084	39536	39536					-0.020068720109975402
QEVFSWVL	8	Unmodified	_QEVFSWVL_					0	0	0		PEX26|p.L103F|1|0.32|ENSG00000215193|chr22:18079950-18079950|C/T|missense_variant	PEX26|p.L103F|1|0.32|ENSG00000215193|chr22:18079950-18079950|C/T|missense_variant	PEX26|p.L103F|1|0.32|ENSG00000215193|chr22:18079950-18079950|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1508483886719	2	504.263468	1006.51238	-1.1784	-0.00059421	-2.8499	-0.0014371	-4.0283	-0.0020313	504.26223473708984	33.871	0.40475	34.624	34.348	34.753	0.75225					12	7	3	0	0	0	0.90224	1	12118	12118		13.508	0	1	1639400			40607	15160	29847	30085	39537	39537					0.009386690402379827
QEVGYSIRF	9	Unmodified	_QEVGYSIRF_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	A375_MHC_IP_R1	1	549.192138671875	2	549.782556	1097.55056	-0.42808	-0.00023535	0.67274	0.00036986	0.24466	0.00013451	549.7823731420997	70.432	0.81679	70.432	70.085	70.902	0					39	15	3	0	0	0	0.027818	2	25558	25558;25608		76.825	29.076	1	22882000			40608	2877	29848	30086	39538;39539	39538					0.005685549549070856
QEVGYSIRF	9	Unmodified	_QEVGYSIRF_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	A375_MHC_IP_R2	2	549.1923828125	2	549.782556	1097.55056	-0.70281	-0.00038639	1.2144	0.00066765	0.51158	0.00028126	549.7825854374538	69.73	0.91328	70.464	69.981	70.895	0.73421					53	17	5	0	0	0	0.027818	4	26394	26373;26394;26407;26438		76.825	20.648	1	24175000			40609	2877	29848	30086	39540;39541;39542;39543	39541					0.005685549549070856
QEVGYTIRF	9	Unmodified	_QEVGYTIRF_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-SECPEP	A375_MHC_IP_R1	1	556.4927978515625	2	556.790381	1111.56621	-0.50329	-0.00028023	-0.27333	-0.00015219	-0.77662	-0.00043241	556.7902023980122	73.106	0.60918	73.106	72.676	73.285	0					29	11	3	0	0	0	0.044425	1	26628	26628		96.936	25.013	1	15673000			40610	1441	29849	30087	39544	39544					0.01488841471973501
QEVGYTIRF	9	Unmodified	_QEVGYTIRF_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-SECPEP	A375_MHC_IP_R2	2	557.1901245117188	2	556.790381	1111.56621	-0.94614	-0.0005268	0.12722	7.0835E-05	-0.81892	-0.00045597	556.7903718908595	72.301	0.60706	73.036	72.67	73.277	0.73515					27	11	3	0	0	0	0.061442	1	27404	27404		82.529	40.69	1	15248000			40611	1441	29849	30087	39545	39545					0.01488841471973501
QEVHPLLTL	9	Unmodified	_QEVHPLLTL_					0	0	0		ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-SECPEP	A375_MHC_IP_R1	1	525.70263671875	2	525.303124	1048.5917	-0.34719	-0.00018238	0.10091	5.3007E-05	-0.24629	-0.00012938	525.3032917025073	82.61	1.063	82.61	81.961	83.024	0					46	20	4	0	0	0	0.0020135	1	30175	30175		145.13	78.673	1	18128000			40612	4214	29850	30088	39546	39546					0.06934315994362805
QEVHPLLTL	9	Unmodified	_QEVHPLLTL_					0	0	0		ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-SECPEP	A375_MHC_IP_R2	2	525.7026977539062	2	525.303124	1048.5917	-0.5583	-0.00029328	-0.1915	-0.0001006	-0.7498	-0.00039387	525.3030788443615	81.66	0.96178	82.403	81.877	82.839	0.74293					44	18	4	0	0	0	0.008833	1	30977	30977		160.52	78.626	1	18346000			40613	4214	29850	30088	39547	39547					0.06934315994362805
QEVHPNPL	8	Unmodified	_QEVHPNPL_					0	0	0		ENST00000359039.4_1_9:21330955-21331207:-|nuORF	ENST00000359039.4_1_9:21330955-21331207:-|nuORF	ENST00000359039.4_1_9:21330955-21331207:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	467.1525573730469	2	467.243067	932.47158	-0.66615	-0.00031125	-0.24288	-0.00011348	-0.90903	-0.00042474	467.2428786695761	30.959	0.75975	31.677	31.266	32.026	0.71857					19	14	2	0	0	0	0.51581	1	10959	10959		48.346	4.4876	1	1382200			40614	11005	29851	30089	39548	39548					0.0026432772061752985
QEVIKAYGF	9	Unmodified	_QEVIKAYGF_					0	0	0		ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	MULTI-SECPEP	A375_MHC_IP_R1	1	528.2216796875	2	527.782025	1053.5495	-0.658	-0.00034728	0.024843	1.3112E-05	-0.63316	-0.00033417	527.7820139729049	65.733	0.86362	65.733	65.411	66.275	0					48	16	4	0	0	0	0.027983	1	23847	23847		103.75	61.654	1	17526000			40615	3016	29852	30090	39549	39549					0.02486340585983271
QEVIKAYGF	9	Unmodified	_QEVIKAYGF_					0	0	0		ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	MULTI-SECPEP	A375_MHC_IP_R2	2	528.1815795898438	2	527.782025	1053.5495	-0.54161	-0.00028585	-0.2622	-0.00013839	-0.80381	-0.00042424	527.7818372135068	65.002	0.76184	65.74	65.359	66.121	0.73811					43	14	4	0	0	0	0.01091	1	24607	24607		144.35	90.517	1	24211000			40616	3016	29852	30090	39550	39550					0.02486340585983271
QEVIPPYYSY	10	Unmodified	_QEVIPPYYSY_					0	0	0		ENSG00000111802|ENST00000378198|TDP2;nc|ENSG00000111802|O95551-2|TDP2;ENST00000478285.1_1_6:24654627-24658985:-|nuORF;nc|ENSG00000111802|O95551-3|TDP2	ENSG00000111802|ENST00000378198|TDP2	ENSG00000111802|ENST00000378198|TDP2	MULTI-SECPEP	A375_MHC_IP_R1	1	630.1287841796875	2	629.803154	1257.59175	-0.76218	-0.00048002	0.058931	3.7115E-05	-0.70325	-0.00044291	630.3047370241256	94.879	0.81467	94.879	94.497	95.312	0					20	15	2	0	0	0	0.24721	1	34883	34883		49.527	35.621	1	1813800			40617	3031	29853	30091	39551	39551					-0.026737287962760092
QEVIPPYYSY	10	Unmodified	_QEVIPPYYSY_					0	0	0		ENSG00000111802|ENST00000378198|TDP2;nc|ENSG00000111802|O95551-2|TDP2;ENST00000478285.1_1_6:24654627-24658985:-|nuORF;nc|ENSG00000111802|O95551-3|TDP2	ENSG00000111802|ENST00000378198|TDP2	ENSG00000111802|ENST00000378198|TDP2	MULTI-MATCH	A375_MHC_IP_R2	2		2	629.803154	1257.59175	-0.6082	-0.00038305	0.53603	0.00033759	-0.072171	-4.5453E-05	629.8038112322764	94.226	0.91121	94.971	94.515	95.426	0.74474	0.045639	0.0003466	NaN	49.527	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	951380			40618	3031	29853	30091							-0.026737287962760092
QEVIQELAQVE	11	Unmodified	_QEVIQELAQVE_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000554557.5_1_14:68248216-68272009:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-SECPEP	A375_MHC_IP_R1	1	429.63970947265625	3	429.225992	1284.65615	-0.31831	-0.00013663	-3.3366	-0.0014322	-3.6549	-0.0015688	429.2265687494186	24.328	0.45565	24.328	24.092	24.547	0					23	8	4	0	0	0	0.98336	1	6806	6806		14.838	9.3146	1	3792400			40619	1530	29854	30092	39552	39552					0.025204262898341767
QEVLQQVL	8	Unmodified	_QEVLQQVL_					0	0	0		ENSG00000130590|ENST00000369886|SAMD10;ENST00000478694.1_1_20:62606865-62609703:-|nuORF	ENSG00000130590|ENST00000369886|SAMD10	ENSG00000130590|ENST00000369886|SAMD10	MULTI-SECPEP	A375_MHC_IP_R1	1	479.1739501953125	2	478.7742	955.533846	-0.66778	-0.00031971	0.089347	4.2777E-05	-0.57843	-0.00027694	478.77422282161814	24.117	0.55654	24.117	23.991	24.547	0					17	10	3	0	0	0	0.76164	1	6790	6790		45.7	0	1	33711000			40620	4257	29855	30093	39553	39553					0.054300540689382615
QEVLRETV	8	Unmodified	_QEVLRETV_					0	0	0		ENSG00000196099|ENST00000309154|OR6M1	ENSG00000196099|ENST00000309154|OR6M1	ENSG00000196099|ENST00000309154|OR6M1	MULTI-SECPEP	A375_MHC_IP_R1	1	487.1895751953125	2	487.269281	972.52401	-0.13331	-6.496E-05	0.32763	0.00015964	0.19431	9.4682E-05	487.2693751375518	47.69	0.60393	47.69	47.416	48.02	0					24	11	3	0	0	0	0.85715	1	16764	16764		29.082	3.6823	1	7264200			40621	8995	29856	30094	39554	39554					0.03664866063559202
QEVNELLQKF	10	Unmodified	_QEVNELLQKF_					0	0	0		nc|ENSG00000039560|Q9P0K7-4|RAI14;nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	MULTI-MSMS	A375_MHC_IP_R1	1	624.7344360351562	2	624.335153	1246.65575	-0.71725	-0.0004478	0.11837	7.3905E-05	-0.59887	-0.0003739	624.3352275606335	84.563	0.66373	84.563	84.292	84.955	0					28	12	3	0	0	0	3.2977E-05	1	30952	30952		169.92	120.37	1	6753300			40622	1160	29857	30095	39555	39555					0.04229051360653102
QEVNELLQKF	10	Unmodified	_QEVNELLQKF_					0	0	0		nc|ENSG00000039560|Q9P0K7-4|RAI14;nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	MULTI-MSMS	A375_MHC_IP_R2	2	625.1943359375	2	624.335153	1246.65575	-0.71683	-0.00044754	0.40367	0.00025203	-0.31316	-0.00019552	624.3352514041884	83.798	0.51225	84.537	84.254	84.766	0.73962					22	9	3	0	0	0	0.29801	1	31780	31780		40.239	26.624	1	6945200			40623	1160	29857	30095	39556	39556					0.04229051360653102
QEVNTKTHPY	10	Unmodified	_QEVNTKTHPY_					0	0	0		ENST00000407426.7_1_2:29147850-29148012:+|nuORF	ENST00000407426.7_1_2:29147850-29148012:+|nuORF	ENST00000407426.7_1_2:29147850-29148012:+|nuORF	MSMS	A375_MHC_IP_R2	2	608.6824340820312	2	608.801477	1215.5884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.736	1	85.472	84.972	85.972	0.73601								0	0	0	0.15435	1	32212	32212		6.7232	0.51738	1				40624	11610	29858	30096	39557	39557					-0.01076978850278465
QEVPEFRNY	9	Unmodified	_QEVPEFRNY_					0	0	0		ENSG00000048342|ENST00000424120|CC2D2A;nc|ENSG00000048342|Q9P2K1-2|CC2D2A	ENSG00000048342|ENST00000424120|CC2D2A	ENSG00000048342|ENST00000424120|CC2D2A	MULTI-SECPEP	A375_MHC_IP_R1	1	591.6826171875	2	591.28292	1180.55129	-0.18271	-0.00010804	0.063163	3.7347E-05	-0.11955	-7.0689E-05	591.2829139905394	49.94	0.97044	49.94	49.54	50.51	0					40	18	3	0	0	0	0.47674	1	17636	17636		29.841	11.694	1	6970100			40625	1211	29859	30097	39558	39558					-0.03176650396039804
QEVPEFRNY	9	Unmodified	_QEVPEFRNY_					0	0	0		ENSG00000048342|ENST00000424120|CC2D2A;nc|ENSG00000048342|Q9P2K1-2|CC2D2A	ENSG00000048342|ENST00000424120|CC2D2A	ENSG00000048342|ENST00000424120|CC2D2A	MULTI-MSMS	A375_MHC_IP_R2	2	592.2405395507812	2	591.28292	1180.55129	-0.80479	-0.00047586	0.26599	0.00015728	-0.5388	-0.00031858	591.2830614654365	49.299	1.0656	50.057	49.536	50.602	0.75736					37	20	3	0	0	0	0.06083	1	18486	18486		60.074	25.142	1	8164300			40626	1211	29859	30097	39559	39559					-0.03176650396039804
QEVPGRAF	8	Unmodified	_QEVPGRAF_					0	0	0		ENSG00000249471|ENST00000336614|ZNF324B;nc|ENSG00000249471|Q6AW86-2|ZNF324B	ENSG00000249471|ENST00000336614|ZNF324B	ENSG00000249471|ENST00000336614|ZNF324B	MULTI-MSMS	A375_MHC_IP_R1	1	452.15826416015625	2	452.237784	902.461016	-0.13918	-6.2943E-05	-0.70454	-0.00031862	-0.84372	-0.00038156	452.2375330762839	33.693	0.91232	33.693	33.291	34.203	0					31	17	3	0	0	0	0.36021	1	11013	11013		54.774	6.4277	1	2703400			40627	9837	29860	30098	39560	39560					0.005883450661940515
QEVPGRAF	8	Unmodified	_QEVPGRAF_					0	0	0		ENSG00000249471|ENST00000336614|ZNF324B;nc|ENSG00000249471|Q6AW86-2|ZNF324B	ENSG00000249471|ENST00000336614|ZNF324B	ENSG00000249471|ENST00000336614|ZNF324B	MULTI-SECPEP	A375_MHC_IP_R2	2	451.6586608886719	2	452.237784	902.461016	-0.35813	-0.00016196	-1.139	-0.00051511	-1.4971	-0.00067706	452.2374530171537	32.925	0.91497	33.662	33.317	34.232	0.73692					31	17	3	0	0	0	0.46048	1	11785	11785		37.974	5.6685	1	3038400			40628	9837	29860	30098	39561	39561					0.005883450661940515
QEVPICTD	8	Unmodified	_QEVPICTD_					0	0	0		nc|ENSG00000112584|Q96EK7-2|FAM120B;ENSG00000112584|ENST00000476287|FAM120B	nc|ENSG00000112584|Q96EK7-2|FAM120B	nc|ENSG00000112584|Q96EK7-2|FAM120B	MSMS	A375_MHC_IP_R1	1	452.6375732421875	2	452.707668	903.400783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.713	1	33.713	33.213	34.213	0								0	0	0	0.16876	1	11037	11037		28.487	0	1				40629	3096	29861	30099	39562	39562					-0.05478133379222072
QEVPICTD	8	Unmodified	_QEVPICTD_					0	0	0		nc|ENSG00000112584|Q96EK7-2|FAM120B;ENSG00000112584|ENST00000476287|FAM120B	nc|ENSG00000112584|Q96EK7-2|FAM120B	nc|ENSG00000112584|Q96EK7-2|FAM120B	MSMS	A375_MHC_IP_R2	2	452.6375732421875	2	452.707668	903.400783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.002	1	33.739	33.239	34.239	0.73692								0	0	0	0.16876	1	11789	11789		21.747	0	1				40630	3096	29861	30099	39563	39563					-0.05478133379222072
QEVPIIIVF	9	Unmodified	_QEVPIIIVF_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	A375_MHC_IP_R1	1	529.7174072265625	2	529.318243	1056.62193	-0.81062	-0.00042908	-0.14679	-7.7698E-05	-0.95741	-0.00050677	529.3181062806229	133.29	0.25618	133.29	133.15	133.41	0					11	4	3	0	0	0	0.16286	1	51415	51415		51.63	11.672	1	9937900			40631	1197	29862	30100	39564	39564					0.09588674659562457
QEVPIIIVF	9	Unmodified	_QEVPIIIVF_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	A375_MHC_IP_R2	2	529.718017578125	2	529.318243	1056.62193	-0.50091	-0.00026514	0.12697	6.7206E-05	-0.37394	-0.00019793	529.3181612580374	133.16	0.25375	133.32	133.15	133.4	0.16487					9	4	3	0	0	0	0.16286	1	52388	52388		51.63	11.672	1	9766500			40632	1197	29862	30100	39565	39565					0.09588674659562457
QEVPSVLAY	9	Unmodified	_QEVPSVLAY_					0	0	0		ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	MULTI-SECPEP	A375_MHC_IP_R1	1	503.6660461425781	2	503.266207	1004.51786	-0.38699	-0.00019476	0.323	0.00016255	-0.063987	-3.2203E-05	503.26643220030616	89.551	1.3679	89.551	89.069	90.437	0					52	26	3	0	0	0	0.070665	1	32846	32846		78.728	44.626	1	15315000			40633	8432	29863	30101	39566	39566					0.01578347832048621
QEVPSVLAY	9	Unmodified	_QEVPSVLAY_					0	0	0		ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	MULTI-MSMS	A375_MHC_IP_R2	2	503.6659851074219	2	503.266207	1004.51786	-0.57731	-0.00029054	-0.12205	-6.1426E-05	-0.69936	-0.00035197	503.26623454273306	88.826	1.3153	89.558	89.178	90.493	0.7318					49	25	3	0	0	0	0.018261	1	33768	33768		85.642	41.783	1	14040000			40634	8432	29863	30101	39567	39567					0.01578347832048621
QEVQPITSY	9	Unmodified	_QEVQPITSY_					0	0	0		ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	MULTI-MSMS	A375_MHC_IP_R1	1	533.6909790039062	2	532.766571	1063.51859	-0.59957	-0.00031943	-0.25595	-0.00013636	-0.85552	-0.00045579	532.7665562330952	57.317	0.91568	57.317	56.753	57.669	0					35	17	3	0	0	0	0.13845	1	20542	20542		43.772	28.934	1	8427800			40635	6420	29864	30102	39568	39568					-0.010628575189002731
QEVQPITSY	9	Unmodified	_QEVQPITSY_					0	0	0		ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	533.1661987304688	2	532.766571	1063.51859	-1.1229	-0.00059826	-0.34452	-0.00018355	-1.4674	-0.00078181	532.7665460400473	56.632	0.8648	57.382	56.847	57.712	0.75015					38	16	3	0	0	0	0.090157	1	21363	21363		76.825	40.319	1	8960700			40636	6420	29864	30102	39569	39569					-0.010628575189002731
QEVSVTIRRF	10	Unmodified	_QEVSVTIRRF_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	A375_MHC_IP_R1	1	412.634765625	3	412.234933	1233.68297	0.48972	0.00020188	-0.45161	-0.00018617	0.038104	1.5708E-05	412.23469258775214	44.445	0.6124	44.445	44.165	44.777	0					23	11	3	0	0	0	0.12159	1	15494	15494		59.013	27.377	1	8241100			40637	3337	29865	30103	39570	39570					0.07547579691708961
QEVSVTIRRF	10	Unmodified	_QEVSVTIRRF_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	A375_MHC_IP_R2	2	412.63470458984375	3	412.234933	1233.68297	0.1898	7.8242E-05	-0.46253	-0.00019067	-0.27273	-0.00011243	412.2347339432453	43.544	0.55531	44.316	44.13	44.685	0.7724					21	10	3	0	0	0	0.061707	1	16236	16236		72.59	40.954	1	5513100			40638	3337	29865	30103	39571	39571					0.07547579691708961
QEVTNNLEF	9	Unmodified	_QEVTNNLEF_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6611938476562	2	547.261653	1092.50875	-0.53225	-0.00029128	-0.35392	-0.00019369	-0.88617	-0.00048497	547.2614278967113	75.287	1.3132	75.287	74.451	75.764	0					50	25	3	0	0	0	0.011066	1	27373	27373		103.42	21.529	1	12084000			40639	4678	29866	30104	39572	39572					-0.03380045524272646
QEVTNNLEF	9	Unmodified	_QEVTNNLEF_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-MSMS	A375_MHC_IP_R2	2	546.7943115234375	2	547.261653	1092.50875	-0.83749	-0.00045832	0.053642	2.9356E-05	-0.78384	-0.00042897	547.2616502836497	74.582	0.91467	75.319	74.757	75.671	0.73752					48	17	4	0	0	0	0.0094788	2	28371	28280;28371		110.67	32.525	1	11412000			40640	4678	29866	30104	39573;39574	39574					-0.03380045524272646
QEVVEELKKY	10	Unmodified	_QEVVEELKKY_					0	0	0		ENSG00000211450|ENST00000534355|SELENOH	ENSG00000211450|ENST00000534355|SELENOH	ENSG00000211450|ENST00000534355|SELENOH	MULTI-SECPEP	A375_MHC_IP_R1	1	422.1363220214844	3	422.230966	1263.67107	0.3668	0.00015487	-0.43781	-0.00018486	-0.071018	-2.9986E-05	422.23063897978744	22.365	0.20346	22.365	22.216	22.419	0					5	3	2	0	0	0	0.93873	1	5993	5993		5.0475	4.6393	1	505300			40641	9549	29867	30105	39575	39575					0.04977918157874228
QEWARPAM	8	Unmodified	_QEWARPAM_					0	0	0			REV__ENSG00000153531|ENST00000612156|ADPRHL1	REV__ENSG00000153531|ENST00000612156|ADPRHL1	MULTI-SECPEP	A375_MHC_IP_R2	2	495.4884948730469	2	494.737094	987.459635	-0.53535	-0.00026486	-0.23715	-0.00011733	-0.7725	-0.00038219	494.7368950213166	40.142	0.25341	40.916	40.727	40.98	0.77451					6	4	2	0	0	0	0.8957	1	14858	14858		15.847	1.0089	1	817650	+		40642	19843	29868	30106	39576	39576					-0.03459612294227554
QEWCSRCFQHQ	11	Unmodified	_QEWCSRCFQHQ_					0	0	0			REV__ENST00000459976.2_1_3:49002373-49005591:+|nuORF	REV__ENST00000459976.2_1_3:49002373-49005591:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	725.5460815429688	2	726.300795	1450.58704	-0.72019	-0.00052307	-3.7629	-0.002733	-4.4831	-0.0032561	726.8006592499461	109.11	0.15409	109.85	109.72	109.88	0.74684					4	2	2	0	0	0	0.99921	1	41150	41150		0	0	1	816900	+		40643	21460	29869	30107	39577	39577					-0.12023259482339199
QEWDGLVRI	9	Unmodified	_QEWDGLVRI_					0	0	0		ENSG00000086189|ENST00000199320|DIMT1;ENST00000509182.1_1_5:61688751-61699599:-|nuORF	ENSG00000086189|ENST00000199320|DIMT1	ENSG00000086189|ENST00000199320|DIMT1	MULTI-MSMS	A375_MHC_IP_R2	2	559.2180786132812	2	558.29583	1114.57711	-0.62676	-0.00034992	-0.086991	-4.8567E-05	-0.71375	-0.00039849	558.2955369033909	91.58	0.96231	92.315	91.767	92.729	0.7345					45	18	5	0	0	0	0.032333	1	34892	34892		72.968	20.7	1	15264000			40644	1830	29870	30108	39578	39578					0.024402438462402642
QEWDGLVRI	9	Unmodified	_QEWDGLVRI_					0	0	0		ENSG00000086189|ENST00000199320|DIMT1;ENST00000509182.1_1_5:61688751-61699599:-|nuORF	ENSG00000086189|ENST00000199320|DIMT1	ENSG00000086189|ENST00000199320|DIMT1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	558.29583	1114.57711	-0.33905	-0.00018929	0.28047	0.00015659	-0.058573	-3.2701E-05	558.2957009125287	92.355	0.81117	92.355	91.857	92.668	0	0.020056	0.00015209	NaN	72.968	45	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16044000			40645	1830	29870	30108							0.024402438462402642
QEWGPGQKKF	10	Unmodified	_QEWGPGQKKF_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	A375_MHC_IP_R1	1	402.6083068847656	3	402.208495	1203.60366	-0.41648	-0.00016751	0.00045454	1.8282E-07	-0.41602	-0.00016733	402.20812396202086	28.82	0.75805	28.82	28.238	28.996	0					24	14	3	0	0	0	0.21466	1	8949	8949		34.222	25.245	1	7136800			40646	9310	29871	30109	39579	39579					0.009999327375680878
QEWGPGQKKF	10	Unmodified	_QEWGPGQKKF_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	A375_MHC_IP_R2	2	402.6083679199219	3	402.208495	1203.60366	-0.16095	-6.4734E-05	-0.022101	-8.8894E-06	-0.18305	-7.3624E-05	402.20847154171304	28.049	0.45717	28.728	28.502	28.96	0.67857					17	8	3	0	0	0	0.21466	1	9677	9677		34.222	25.777	1	8100700			40647	9310	29871	30109	39580	39580					0.009999327375680878
QEWIHYSR	8	Unmodified	_QEWIHYSR_					0	0	0		ENST00000552329.1_3_12:102111123-102117010:+|nuORF	ENST00000552329.1_3_12:102111123-102117010:+|nuORF	ENST00000552329.1_3_12:102111123-102117010:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	373.37152099609375	3	373.51744	1117.53049	0.25265	9.4369E-05	0.66465	0.00024826	0.9173	0.00034263	373.51782577758604	25.13	2.4301	25.13	24.647	27.078	0					57	47	2	0	0	0	0.96184	1	7785	7785		18.146	7.3468	1	10060000			40648	13388	29872	30110	39581	39581					-0.023571959850414714
QEYDKLLRKV	10	Unmodified	_QEYDKLLRKV_					0	0	0			REV__nc|ENSG00000054654|Q8WXH0|SYNE2	REV__nc|ENSG00000054654|Q8WXH0|SYNE2	MSMS	A375_MHC_IP_R2	2	646.395751953125	2	646.372069	1290.72959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.097	1	99.857	99.357	100.36	0.75977								0	0	0	0.14925	1	37592	37592		19.257	0	1		+		40649	16407	29873	30111	39582	39582					0.09585019522955918
QEYDLDKNTW	10	Unmodified	_QEYDLDKNTW_					0	0	0		nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN	nc|ENSG00000088812|O75882-3|ATRN	nc|ENSG00000088812|O75882-3|ATRN	MULTI-MSMS	A375_MHC_IP_R1	1	656.6959228515625	2	656.296224	1310.5779	-0.49426	-0.00032438	0.60951	0.00040002	0.11524	7.5632E-05	656.2962221487602	58.215	0.40462	58.215	57.923	58.328	0					14	7	3	0	0	0	0.0018419	1	20896	20896		140.63	104.51	1	2319000			40650	1897	29874	30112	39583	39583					-0.06497006295398933
QEYDLDKNTW	10	Unmodified	_QEYDLDKNTW_					0	0	0		nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN	nc|ENSG00000088812|O75882-3|ATRN	nc|ENSG00000088812|O75882-3|ATRN	MULTI-MSMS	A375_MHC_IP_R2	2	657.2344970703125	2	656.296224	1310.5779	-1.1993	-0.00078713	1.1131	0.0007305	-0.086283	-5.6627E-05	656.2968913007608	57.587	0.45824	58.336	58.069	58.528	0.74894					16	8	3	0	0	0	0.69871	1	21754	21754		12.873	4.1272	1	2264300			40651	1897	29874	30112	39584	39584					-0.06497006295398933
QEYEEQFKF	9	Unmodified	_QEYEEQFKF_					0	0	0		ENSG00000172775|ENST00000309137|PSME3IP1	ENSG00000172775|ENST00000309137|PSME3IP1	ENSG00000172775|ENST00000309137|PSME3IP1	MULTI-MSMS	A375_MHC_IP_R1	1	624.6817016601562	2	624.282586	1246.55062	-0.71249	-0.0004448	-2.9611	-0.0018486	-3.6736	-0.0022934	624.2793025341721	66.283	2.0383	66.283	65.411	67.449	0					62	39	3	0	0	0	0.012447	1	24025	24025		93.166	25.328	1	4200700			40652	7735	29875	30113	39585	39585					-0.06279489835787899
QEYEFEKQF	9	Unmodified	_QEYEFEKQF_					0	0	0		ENSG00000170522|ENST00000302274|ELOVL6	ENSG00000170522|ENST00000302274|ELOVL6	ENSG00000170522|ENST00000302274|ELOVL6	MULTI-MSMS	A375_MHC_IP_R1	1	624.6813354492188	2	624.282586	1246.55062	-0.49326	-0.00030793	-1.2612	-0.00078736	-1.7545	-0.0010953	624.2813769996944	59.664	1.2209	59.664	58.938	60.159	0					52	23	4	0	0	0	0.0093069	1	21453	21453		173.69	59.037	1	8438500			40653	7517	29876	30114	39586	39586					-0.06279489835787899
QEYEFEKQF	9	Unmodified	_QEYEFEKQF_					0	0	0		ENSG00000170522|ENST00000302274|ELOVL6	ENSG00000170522|ENST00000302274|ELOVL6	ENSG00000170522|ENST00000302274|ELOVL6	MULTI-MSMS	A375_MHC_IP_R2	2	625.183349609375	2	624.282586	1246.55062	-1.1517	-0.00071902	-1.6493	-0.0010296	-2.801	-0.0017486	624.2805597996961	59.027	2.0799	59.774	58.169	60.249	0.74714					66	40	4	0	0	0	0.0099679	1	22291	22291		121.53	57.574	1	8583900			40654	7517	29876	30114	39587	39587					-0.06279489835787899
QEYFDVEP	8	Unmodified	_QEYFDVEP_					0	0	0		ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	514.1253051757812	2	513.724372	1025.43419	-0.58368	-0.00029985	1.4998	0.00077047	0.91609	0.00047062	513.7255448615581	85.798	0.76321	86.534	86.085	86.848	0.73601					31	14	3	0	0	0	0.8957	1	32566	32566		21.747	0	1	7838700			40655	4114	29877	30115	39588	39588					-0.0775080833566335
QEYLDTLYR	9	Unmodified	_QEYLDTLYR_					0	0	0		ENST00000518442.5_1_8:109247181-109261015:-|nuORF;ENSG00000104408|ENST00000220849|EIF3E	ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENST00000518442.5_1_8:109247181-109261015:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	602.6964721679688	2	600.798403	1199.58225	-0.59189	-0.00035561	-3.029	-0.0018198	-3.6209	-0.0021755	600.7986442205881	66.734	1.2728	67.47	66.678	67.951	0.73631					86	24	6	0	0	0	0.6656	1	25218	25218		10.074	0	1	56239000			40656	2507	29878	30116	39589	39589					-0.009554970818271613
QEYPDEIEY	9	Unmodified	_QEYPDEIEY_					0	0	0		nc|ENSG00000112715|P15692-10|VEGFA;ENST00000476772.5_1_6:43738443-43746274:+|nuORF;ENSG00000112715|ENST00000672860|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-1|VEGFA;ENST00000518538.5_1_6:43738983-43746656:+|nuORF;nc|ENSG00000112715|P15692-2|VEGFA;nc|ENSG00000112715|P15692-3|VEGFA;nc|ENSG00000112715|P15692-8|VEGFA;nc|ENSG00000112715|P15692-4|VEGFA;nc|ENSG00000112715|P15692-5|VEGFA;nc|ENSG00000112715|P15692-6|VEGFA;nc|ENSG00000112715|P15692-9|VEGFA;nc|ENSG00000112715|P15692-14|VEGFA	nc|ENSG00000112715|P15692-10|VEGFA	nc|ENSG00000112715|P15692-10|VEGFA	MULTI-MSMS	A375_MHC_IP_R1	1	593.2717895507812	2	593.250951	1184.48735	-0.24012	-0.00014245	1.3474	0.00079937	1.1073	0.00065692	593.2522085081047	70.373	0.56295	70.373	70.085	70.648	0					14	10	2	0	0	0	0.67332	1	25591	25591		9.3831	1.473	1	749190			40657	3107	29879	30117	39590	39590					-0.09751475343659877
QEYPDEIEY	9	Unmodified	_QEYPDEIEY_					0	0	0		nc|ENSG00000112715|P15692-10|VEGFA;ENST00000476772.5_1_6:43738443-43746274:+|nuORF;ENSG00000112715|ENST00000672860|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-1|VEGFA;ENST00000518538.5_1_6:43738983-43746656:+|nuORF;nc|ENSG00000112715|P15692-2|VEGFA;nc|ENSG00000112715|P15692-3|VEGFA;nc|ENSG00000112715|P15692-8|VEGFA;nc|ENSG00000112715|P15692-4|VEGFA;nc|ENSG00000112715|P15692-5|VEGFA;nc|ENSG00000112715|P15692-6|VEGFA;nc|ENSG00000112715|P15692-9|VEGFA;nc|ENSG00000112715|P15692-14|VEGFA	nc|ENSG00000112715|P15692-10|VEGFA	nc|ENSG00000112715|P15692-10|VEGFA	MULTI-MATCH	A375_MHC_IP_R2	2		2	593.250951	1184.48735	-0.49456	-0.0002934	0.48586	0.00028824	-0.0086953	-5.1585E-06	593.251409030354	69.929	0.40638	70.664	70.437	70.844	0.73421	0.14519	-0.00018307	NaN	9.3831	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	830600			40658	3107	29879	30117							-0.09751475343659877
QEYPDLIHI	9	Unmodified	_QEYPDLIHI_					0	0	0		ENSG00000067066|ENST00000340126|SP100;SP100|p.E212Tfs*12|1|0.15|ENSG00000067066|chr2:230449607-230449608|AG/-|frameshift_variant;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L;nc|ENSG00000185404|Q9H930-3|SP140L;nc|ENSG00000185404|Q9H930-1|SP140L	ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497|SP100;nc|ENSG00000185404|Q9H930-2|SP140L	nc|ENSG00000185404|Q9H930-2|SP140L	MULTI-SECPEP	A375_MHC_IP_R1	1	564.688232421875	2	564.290214	1126.56587	-0.28344	-0.00015994	-0.15669	-8.8421E-05	-0.44014	-0.00024836	564.2899294197939	92.152	0.70911	92.152	91.857	92.566	0					25	13	3	0	0	0	0.014271	1	33847	33847		100.37	11.468	1	3699700			40659	8663;14473;1426	29880	30118	39591	39591					0.007654217520894235
QEYPDLIHI	9	Unmodified	_QEYPDLIHI_					0	0	0		ENSG00000067066|ENST00000340126|SP100;SP100|p.E212Tfs*12|1|0.15|ENSG00000067066|chr2:230449607-230449608|AG/-|frameshift_variant;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L;nc|ENSG00000185404|Q9H930-3|SP140L;nc|ENSG00000185404|Q9H930-1|SP140L	ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497|SP100;nc|ENSG00000185404|Q9H930-2|SP140L	nc|ENSG00000185404|Q9H930-2|SP140L	MULTI-MSMS	A375_MHC_IP_R2	2	564.6903076171875	2	564.290214	1126.56587	-0.39961	-0.0002255	0.052363	2.9548E-05	-0.34725	-0.00019595	564.2902211462036	91.451	0.66199	92.185	91.868	92.53	0.73451					21	12	2	0	0	0	0.0095277	1	34759	34759		108	11.712	1	3270500			40660	8663;14473;1426	29880	30118	39592	39592					0.007654217520894235
QEYPDLIHIY	10	Unmodified	_QEYPDLIHIY_					0	0	0		ENSG00000067066|ENST00000340126|SP100;SP100|p.E212Tfs*12|1|0.15|ENSG00000067066|chr2:230449607-230449608|AG/-|frameshift_variant;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L;nc|ENSG00000185404|Q9H930-3|SP140L;nc|ENSG00000185404|Q9H930-1|SP140L	ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497|SP100;nc|ENSG00000185404|Q9H930-2|SP140L	nc|ENSG00000185404|Q9H930-2|SP140L	MULTI-MSMS	A375_MHC_IP_R1	1	646.3947143554688	2	645.821878	1289.6292	-0.4121	-0.00026614	0.53351	0.00034455	0.12141	7.8409E-05	646.3241028688578	99.749	0.60384	99.749	99.473	100.08	0					20	11	2	0	0	0	0.00022086	1	36652	36652		152.41	92.338	1	8025700			40661	8663;14473;1426	29881	30119	39593	39593					-0.004026375306693808
QEYPDLIHIY	10	Unmodified	_QEYPDLIHIY_					0	0	0		ENSG00000067066|ENST00000340126|SP100;SP100|p.E212Tfs*12|1|0.15|ENSG00000067066|chr2:230449607-230449608|AG/-|frameshift_variant;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L;nc|ENSG00000185404|Q9H930-3|SP140L;nc|ENSG00000185404|Q9H930-1|SP140L	ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497|SP100;nc|ENSG00000185404|Q9H930-2|SP140L	nc|ENSG00000185404|Q9H930-2|SP140L	MULTI-MSMS	A375_MHC_IP_R2	2	646.2211303710938	2	645.821878	1289.6292	-0.53781	-0.00034733	0.45077	0.00029112	-0.087046	-5.6216E-05	645.8215200661481	99.011	0.60954	99.771	99.505	100.11	0.75977					27	11	3	0	0	0	0.011448	1	37565	37565		111.29	59.657	1	6961700			40662	8663;14473;1426	29881	30119	39594	39594					-0.004026375306693808
QEYTEDLRKY	10	Unmodified	_QEYTEDLRKY_					0	0	0		ENSG00000104331|ENST00000262644|BPNT2	ENSG00000104331|ENST00000262644|BPNT2	ENSG00000104331|ENST00000262644|BPNT2	MULTI-MSMS	A375_MHC_IP_R1	1	449.2857971191406	3	448.885858	1343.63574	-0.18565	-8.3338E-05	1.9753	0.00088669	1.7897	0.00080335	448.8866935745958	33.165	0.7097	33.165	32.938	33.648	0					22	13	2	0	0	0	0.023568	1	10807	10807		64.692	40.727	1	5093800			40663	2500	29882	30120	39595	39595					-0.022327443699623473
QEYVEAVSF	9	Unmodified	_QEYVEAVSF_					0	0	0		ENSG00000116918|ENST00000366639|TSNAX	ENSG00000116918|ENST00000366639|TSNAX	ENSG00000116918|ENST00000366639|TSNAX	MULTI-SECPEP	A375_MHC_IP_R1	1	536.6525268554688	2	536.253297	1070.49204	-0.61553	-0.00033008	-0.573	-0.00030727	-1.1885	-0.00063735	536.2526369160678	89.111	0.60917	89.111	88.714	89.323	0					25	11	3	0	0	0	0.14572	1	32736	32736		53.833	21.527	1	1992100			40664	3444	29883	30121	39596	39596					-0.04038546410242816
QEYVEAVSF	9	Unmodified	_QEYVEAVSF_					0	0	0		ENSG00000116918|ENST00000366639|TSNAX	ENSG00000116918|ENST00000366639|TSNAX	ENSG00000116918|ENST00000366639|TSNAX	MULTI-MSMS	A375_MHC_IP_R2	2	536.6526489257812	2	536.253297	1070.49204	-0.79772	-0.00042778	-0.54959	-0.00029472	-1.3473	-0.0007225	536.2531449485753	88.439	0.76011	89.171	88.875	89.635	0.7318					28	14	3	0	0	0	0.021889	1	33640	33640		81.89	35.869	1	2607500			40665	3444	29883	30121	39597	39597					-0.04038546410242816
QFALEPYYW	9	Unmodified	_QFALEPYYW_					0	0	0			REV__ENSG00000102218|ENST00000218340|RP2	REV__ENSG00000102218|ENST00000218340|RP2	MULTI-SECPEP	A375_MHC_IP_R2	2	609.1798095703125	2	608.787307	1215.56006	-0.36824	-0.00022418	1.4012	0.00085302	1.0329	0.00062883	608.7890678884501	87.796	0.96199	88.528	88.166	89.128	0.7318					55	18	6	0	0	0	0.5212	1	33313	33313		28.487	0	1	19063000	+		40666	17211	29884	30122	39598	39598					-0.039096767595765414
QFATTAKVKW	10	Unmodified	_QFATTAKVKW_					0	0	0			REV__nc|ENSG00000113328|P51959-2|CCNG1	REV__nc|ENSG00000113328|P51959-2|CCNG1	MULTI-SECPEP	A375_MHC_IP_R2	2	394.6409912109375	3	393.888874	1178.64479	-0.23734	-9.3487E-05	0.77158	0.00030392	0.53424	0.00021043	393.88922033234974	39.419	0.4058	40.194	39.914	40.32	0.77451					11	7	2	0	0	0	0.92227	1	14509	14509		11.518	0.71837	1	2113700	+		40667	17775	29885	30123	39599	39599					0.0626169377703718
QFCCCCCCC	9	Unmodified	_QFCCCCCCC_					0	0	0			REV__ENST00000606389.5_1_2:69691306-69691378:-|nuORF	REV__ENST00000606389.5_1_2:69691306-69691378:-|nuORF	MSMS	A375_MHC_IP_R2	2	508.12164306640625	2	508.1082	1014.20185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.179	1	38.953	38.453	39.453	0.77451								0	0	0	0.15486	1	14028	14028		0	0	1				40668	26540	29886	30124	39600	39600					-0.30468539133107697
QFCCCCCCCC	10	Unmodified	_QFCCCCCCCC_					0	0	0			REV__ENST00000606389.5_1_2:69691306-69691378:-|nuORF	REV__ENST00000606389.5_1_2:69691306-69691378:-|nuORF	MSMS	A375_MHC_IP_R1	1	559.5119018554688	2	559.612792	1117.21103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.787	1	21.787	21.287	22.287	0								0	0	0	0.15642	1	5775	5775		0	0	1				40669	26540	29887	30125	39601	39601					-0.34288513839078405
QFFDKIYL	8	Unmodified	_QFFDKIYL_					0	0	0			REV__ENST00000517608.5_1_8:74705439-74705553:-|nuORF	REV__ENST00000517608.5_1_8:74705439-74705553:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	537.060546875	2	537.286943	1072.55933	-0.95904	-0.00051528	-0.27042	-0.00014529	-1.2295	-0.00066057	537.286621132766	133.94	0.3058	133.94	133.81	134.12	0					8	5	2	0	0	0	0.94479	1	51636	51636		8.5933	0	1	2774200	+		40670	25670	29888	30126	39602	39602					0.0259552859138239
QFFKKRVRRWI	11	Unmodified	_QFFKKRVRRWI_					0	0	0		SGK1|p.K224Nfs*7|1|0.2|ENSG00000118515|chr6:134172307-134172307|T/-|frameshift_variant;ENSG00000118515|ENST00000367858|SGK1	SGK1|p.K224Nfs*7|1|0.2|ENSG00000118515|chr6:134172307-134172307|T/-|frameshift_variant	SGK1|p.K224Nfs*7|1|0.2|ENSG00000118515|chr6:134172307-134172307|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	522.7186889648438	3	521.984283	1562.93102	-0.85626	-0.00044695	0.091553	4.7789E-05	-0.7647	-0.00039916	522.3184870297813	141.86	0.55736	141.86	141.37	141.93	0					11	10	2	0	0	0	1.0015	1	54433	54433		0	0	1	1214800			40671	3549	29889	30127	39603	39603					0.17207173070028148
QFFKKRVRRWI	11	Unmodified	_QFFKKRVRRWI_					0	0	0		SGK1|p.K224Nfs*7|1|0.2|ENSG00000118515|chr6:134172307-134172307|T/-|frameshift_variant;ENSG00000118515|ENST00000367858|SGK1	SGK1|p.K224Nfs*7|1|0.2|ENSG00000118515|chr6:134172307-134172307|T/-|frameshift_variant	SGK1|p.K224Nfs*7|1|0.2|ENSG00000118515|chr6:134172307-134172307|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	521.2333984375	3	521.984283	1562.93102	-0.40305	-0.00021038	0.15198	7.9333E-05	-0.25106	-0.00013105	522.3182030504868	141.81	0.55768	141.84	141.52	142.08	0.030746					13	10	2	0	0	0	1.0015	1	55513	55513		0	0	1	1571000			40672	3549	29889	30127	39604	39604					0.17207173070028148
QFFRRFQHGSR	11	Unmodified	_QFFRRFQHGSR_					0	0	0			REV__ENST00000449169.1_1_1:110835106-110881762:-|nuORF	REV__ENST00000449169.1_1_1:110835106-110881762:-|nuORF	MSMS	A375_MHC_IP_R2	2	733.4432373046875	2	733.381626	1464.7487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.48	1	106.24	105.74	106.74	0.76051								0	0	0	0.16279	1	39893	39893		4.1895	0.90819	1		+		40673	24876	29890	30128	39605	39605					0.03491413657252451
QFFWELIGG	9	Unmodified	_QFFWELIGG_					0	0	0		THBS2|p.L304F|1|0.89|ENSG00000186340|chr6:169240574-169240574|G/A|missense_variant	THBS2|p.L304F|1|0.89|ENSG00000186340|chr6:169240574-169240574|G/A|missense_variant	THBS2|p.L304F|1|0.89|ENSG00000186340|chr6:169240574-169240574|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	548.6913452148438	2	548.776742	1095.53893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.42	1	101.42	100.92	101.92	0								0	0	0	0.14851	1	37275	37275		24.021	3.5669	1				40674	29335	29891	30129	39606	39606					-0.005016420684341938
QFGATLVC	8	Unmodified	_QFGATLVC_					0	0	0		nc|ENSG00000106868|Q6UWL2-3|SUSD1;ENSG00000106868|ENST00000374270|SUSD1;nc|ENSG00000106868|Q6UWL2-2|SUSD1	nc|ENSG00000106868|Q6UWL2-3|SUSD1	nc|ENSG00000106868|Q6UWL2-3|SUSD1	MULTI-SECPEP	A375_MHC_IP_R2	2	419.27239990234375	2	419.710014	837.405474	-0.42928	-0.00018017	0.24415	0.00010247	-0.18513	-7.77E-05	419.7100561692507	22.441	0.51207	23.06	22.897	23.409	0.61932					13	9	2	0	0	0	0.972	1	7151	7151		8.5933	0	1	1014300			40675	2717	29892	30130	39607	39607					-0.019732044457896336
QFGEFCDCTY	10	Unmodified	_QFGEFCDCTY_					0	0	0			REV__ENSG00000119681|ENST00000261978|LTBP2	REV__ENSG00000119681|ENST00000261978|LTBP2	MSMS	A375_MHC_IP_R2	2	606.6834106445312	2	606.720449	1211.42635	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.065	1	51.819	51.319	52.319	0.75406								0	0	0	0.15531	1	19211	19211		3.5965	1.7523	1		+		40676	18082	29893	30131	39608	39608					-0.17091026919092656
QFIRNRQKFQP	11	Unmodified	_QFIRNRQKFQP_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MSMS	A375_MHC_IP_R1	1	731.9262084960938	2	731.407309	1460.80007	-0.52616	-0.00038484	-1.08	-0.00078994	-1.6062	-0.0011748	731.4066754023166	83.219	0.60828	83.219	82.823	83.432	0					22	11	3	0	0	0	0.72565	1	30476	30476		13.042	2.243	1	4542300			40677	8698	29894	30132	39609	39609					0.08809737631304415
QFIRNRQKFQP	11	Unmodified	_QFIRNRQKFQP_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MSMS	A375_MHC_IP_R2	2	731.3431396484375	2	731.407309	1460.80007	-0.82811	-0.00060568	-0.95479	-0.00069834	-1.7829	-0.001304	731.4065069284264	82.556	0.45457	83.299	83.042	83.497	0.74294					19	8	3	0	0	0	0.72565	2	31368	31368;31372		13.042	2.243	1	3541600			40678	8698	29894	30132	39610;39611	39610					0.08809737631304415
QFISWCVFW	9	Unmodified	_QFISWCVFW_					0	0	0			REV__ENST00000453574.1_1_X:100673300-100674112:+|nuORF	REV__ENST00000453574.1_1_X:100673300-100674112:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	608.687255859375	2	608.28642	1214.55829	-0.42814	-0.00026043	-3.5078	-0.0021338	-3.936	-0.0023942	608.2853612656108	73.994	1.4263	74.731	73.787	75.214	0.73752					47	27	3	0	0	0	0.25276	1	28150	28150		34.102	5.6156	1	3637100	+		40679	24912	29895	30133	39612	39612					-0.04041009049183231
QFLEEVQPY	9	Unmodified	_QFLEEVQPY_					0	0	0		ENSG00000181409|ENST00000326724|AATK;nc|ENSG00000181409|Q6ZMQ8-3|AATK;ENST00000576053.1_1_17:79100587-79102359:-|nuORF	ENSG00000181409|ENST00000326724|AATK	ENSG00000181409|ENST00000326724|AATK	MULTI-SECPEP	A375_MHC_IP_R1	1	385.6089172363281	3	384.85724	1151.54989	-0.18366	-7.0681E-05	-1.7722	-0.00068203	-1.9558	-0.00075271	384.8563371396768	29.212	0.30552	29.212	29.047	29.353	0					11	5	3	0	0	0	0.76827	1	9169	9169		7.1017	4.8189	1	2710600			40680	8345	29896	30134	39613	39613					-0.019822844848022214
QFLSPPLGTL	10	Unmodified	_QFLSPPLGTL_					0	0	0			REV__LRG1|p.G134S|1|0.28|ENSG00000171236|chr19:4538584-4538584|C/T|missense_variant	REV__LRG1|p.G134S|1|0.28|ENSG00000171236|chr19:4538584-4538584|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	538.3466796875	2	536.8055	1071.59645	-1.1909	-0.00063929	0.19418	0.00010424	-0.99674	-0.00053506	537.3077342286527	61.321	0.9575	62.066	61.769	62.726	0.74503					67	18	5	0	0	0	0.69306	1	23180	23180		13.906	0	1	56424000	+		40681	26942	29897	30135	39614	39614					0.06351200137146407
QFLSWASPF	9	Unmodified	_QFLSWASPF_					0	0	0		ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	MULTI-MSMS	A375_MHC_IP_R2	2	542.6893310546875	2	541.768917	1081.52328	-1.1312	-0.00061283	1.4025	0.00075982	0.27131	0.00014699	541.7688451144334	60.804	1.2188	61.549	60.801	62.02	0.74503					47	23	3	0	0	0	0.32899	1	22821	22821		28.487	3.0875	1	5672500			40682	7584	29898	30136	39615	39615					-0.014219285855006092
QFMWIIRK	8	Unmodified	_QFMWIIRK_					0	0	0		ENSG00000034713|ENST00000037243|GABARAPL2	ENSG00000034713|ENST00000037243|GABARAPL2	ENSG00000034713|ENST00000037243|GABARAPL2	MULTI-SECPEP	A375_MHC_IP_R2	2	374.9375	3	374.547795	1120.62156	0.54343	0.00020354	0.96358	0.00036091	1.507	0.00056445	374.54818119434947	43.836	0.50428	44.605	44.43	44.934	0.7691					11	9	2	0	0	0	0.96184	1	16448	16448		13.042	0	1	1287100			40683	1129	29899	30137	39616	39616					0.06606976458715508
QFNGTLRVW	9	Unmodified	_QFNGTLRVW_					0	0	0			REV__ENST00000442820.5_1_1:163292868-163295870:+|nuORF	REV__ENST00000442820.5_1_1:163292868-163295870:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	560.6747436523438	2	560.79854	1119.58253	-0.39638	-0.00022229	-4.0071	-0.0022471	-4.4034	-0.0024694	560.7930812259062	62.308	1.7914	62.308	61.432	63.223	0					43	34	3	0	0	0	0.56537	1	22630	22630		29.082	19.698	1	2140700	+		40684	24820	29900	30138	39617	39617					0.027519674287077578
QFNRELKLLEY	11	Unmodified	_QFNRELKLLEY_					0	0	0			REV__ENSG00000226650|ENST00000435029|KIF4B;REV__ENSG00000090889|ENST00000374403|KIF4A	REV__ENSG00000226650|ENST00000435029|KIF4B	MULTI-SECPEP	A375_MHC_IP_R1	1	484.6895751953125	3	484.933031	1451.77726	-0.28376	-0.00013761	0.25185	0.00012213	-0.031911	-1.5475E-05	484.9331895125136	43.826	0.40623	43.826	43.553	43.959	0					11	7	2	0	0	0	0.99411	1	15170	15170		9.7643	5.0483	1	1663300	+		40685	22723;16934	29901	30139	39618	39618					0.06944673723182859
QFNRELKLLEY	11	Unmodified	_QFNRELKLLEY_					0	0	0			REV__ENSG00000226650|ENST00000435029|KIF4B;REV__ENSG00000090889|ENST00000374403|KIF4A	REV__ENSG00000226650|ENST00000435029|KIF4B	MULTI-MATCH	A375_MHC_IP_R2	2		3	484.933031	1451.77726	-0.52276	-0.0002535	-0.40359	-0.00019571	-0.92635	-0.00044922	484.9329436818811	42.836	0.30299	43.608	43.472	43.775	0.7724	-0.10914	-0.00035119	NaN	9.7643	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1931200	+		40686	22723;16934	29901	30139							0.06944673723182859
QFPKGFAFD	9	Unmodified	_QFPKGFAFD_					0	0	0		ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3	ENSG00000105409|ENST00000648268|ATP1A3	ENSG00000105409|ENST00000648268|ATP1A3	MSMS	A375_MHC_IP_R1	1	528.6672973632812	2	528.761092	1055.50763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.632	1	51.632	51.132	52.132	0								0	0	0	0.14677	1	18333	18333		26.884	5.137	1				40687	2604	29902	30140	39619	39619					-0.01790215102505499
QFPLNRTG	8	Unmodified	_QFPLNRTG_					0	0	0			REV__nc|ENSG00000151033|Q7Z4W2-2|LYZL2	REV__nc|ENSG00000151033|Q7Z4W2-2|LYZL2	MULTI-MSMS	A375_MHC_IP_R1	1	467.3627624511719	2	466.751059	931.487565	-0.41889	-0.00019552	0.31332	0.00014624	-0.10558	-4.9278E-05	466.75105789716935	47.029	0.61555	47.029	46.647	47.263	0					18	11	2	0	0	0	0.74543	1	16485	16485		21.537	7.6309	1	3446000	+		40688	27196	29903	30141	39620	39620					0.01908033957522548
QFPLNRTG	8	Unmodified	_QFPLNRTG_					0	0	0			REV__nc|ENSG00000151033|Q7Z4W2-2|LYZL2	REV__nc|ENSG00000151033|Q7Z4W2-2|LYZL2	MULTI-SECPEP	A375_MHC_IP_R2	2	467.15093994140625	2	466.751059	931.487565	-0.59413	-0.00027731	0.075249	3.5123E-05	-0.51889	-0.00024219	466.75108517553844	46.006	0.55562	46.771	46.453	47.008	0.76519					19	10	3	0	0	0	0.93661	1	17188	17188		21.747	5.8995	1	4734000	+		40689	27196	29903	30141	39621	39621					0.01908033957522548
QFQLIHEEL	9	Unmodified	_QFQLIHEEL_					0	0	0		ENST00000522166.1_1_8:57125296-57125371:+|nuORF	ENST00000522166.1_1_8:57125296-57125371:+|nuORF	ENST00000522166.1_1_8:57125296-57125371:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	387.27301025390625	3	386.204751	1155.59242	0.16448	6.3522E-05	-0.046144	-1.7821E-05	0.11833	4.5701E-05	386.2047807633238	37.796	0.81459	37.796	37.454	38.268	0					36	15	4	0	0	0	0.63811	1	12713	12713		8.1555	1.9637	1	12830000			40690	13021	29904	30142	39622	39622					0.02085110643452026
QFQVTEQMA	9	Unmodified	_QFQVTEQMA_					0	0	0			REV__ENSG00000178814|ENST00000618853|OPLAH	REV__ENSG00000178814|ENST00000618853|OPLAH	MULTI-MSMS	A375_MHC_IP_R1	1	541.6512451171875	2	541.252774	1080.491	-0.89851	-0.00048632	-0.72657	-0.00039326	-1.6251	-0.00087958	541.2525281934302	26.806	1.6166	26.806	25.917	27.533	0					63	31	3	0	0	0	0.38603	1	8032	8032		25.399	9.2502	1	3645700	+		40691	21521	29905	30143	39623	39623					-0.046030840507683024
QFQVTEQMA	9	Unmodified	_QFQVTEQMA_					0	0	0			REV__ENSG00000178814|ENST00000618853|OPLAH	REV__ENSG00000178814|ENST00000618853|OPLAH	MULTI-SECPEP	A375_MHC_IP_R1	1	541.1402587890625	2	541.252774	1080.491	-0.89851	-0.00048632	-0.72657	-0.00039326	-1.6251	-0.00087958	541.2525281934302	26.806	1.6166	26.806	25.917	27.533	0					63	31	3	0	0	0	0.4261	1	7941	7941		37.974	21.032	1	3645700	+		40692	21521	29905	30143	39624	39624					-0.046030840507683024
QFRFANFQF	9	Unmodified	_QFRFANFQF_					0	0	0			REV__ENSG00000119913|ENST00000646139|TECTB	REV__ENSG00000119913|ENST00000646139|TECTB	MULTI-SECPEP	A375_MHC_IP_R2	2	602.6931762695312	2	602.79854	1203.58253	-0.49109	-0.00029603	-0.16156	-9.7387E-05	-0.65265	-0.00039341	602.7984760599187	74.285	0.66083	75.023	74.553	75.214	0.73752					19	12	2	0	0	0	0.71541	1	28117	28117		11.64	0.81637	1	4409700	+		40693	18102	29906	30144	39625	39625					-0.01112032571313648
QFRLISCEP	9	Unmodified	_QFRLISCEP_					0	0	0		ENST00000506586.1_1_5:93928514-93929327:+|nuORF	ENST00000506586.1_1_5:93928514-93929327:+|nuORF	ENST00000506586.1_1_5:93928514-93929327:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	546.1832885742188	2	546.778959	1091.54336	-0.42916	-0.00023466	0.83987	0.00045922	0.41071	0.00022457	546.7788142026094	62.764	0.4093	62.764	62.557	62.966	0					16	7	3	0	0	0	0.73008	1	22602	22602		12.241	0	1	919070			40694	12857	29907	30145	39626	39626					0.0012549908283290279
QFSKLLPAV	9	Unmodified	_QFSKLLPAV_					0	0	0			REV__nc|ENSG00000257923|P39880-6|CUX1	REV__nc|ENSG00000257923|P39880-6|CUX1	MULTI-MSMS	A375_MHC_IP_R2	2	502.2022705078125	2	501.80276	1001.59097	-0.51128	-0.00025656	-0.12196	-6.1202E-05	-0.63325	-0.00031777	501.8025982948112	90.229	0.55808	90.961	90.751	91.309	0.7318					21	10	3	0	0	0	0.070818	1	34348	34348		56.177	8.4284	1	1599500	+		40695	22894	29908	30146	39627	39627					0.09023521345329755
QFSKLLPAV	9	Unmodified	_QFSKLLPAV_					0	0	0			REV__nc|ENSG00000257923|P39880-6|CUX1	REV__nc|ENSG00000257923|P39880-6|CUX1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	501.80276	1001.59097	-0.51128	-0.00025656	-0.12196	-6.1202E-05	-0.63325	-0.00031777	501.8025982948112	90.229	0.55808	90.961	90.751	91.309	0.7318	-0.12387	0.00018154	NaN	56.177	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1599500	+		40696	22894	29908	30146							0.09023521345329755
QFSLEEKSL	9	Unmodified	_QFSLEEKSL_					0	0	0		nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG	nc|ENSG00000042832|P01266-2|TG	nc|ENSG00000042832|P01266-2|TG	MULTI-SECPEP	A375_MHC_IP_R2	2	541.0490112304688	2	540.782222	1079.54989	-0.82605	-0.00044671	-1.1708	-0.00063316	-1.9969	-0.0010799	541.2850715025654	78.065	0.81779	78.808	78.365	79.183	0.74293					20	15	2	0	0	0	0.41434	1	29501	29501		26.268	0	1	1071800			40697	1178	29909	30147	39628	39628					0.013297155152031337
QFSLEELLSKV	11	Unmodified	_QFSLEELLSKV_					0	0	0			REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL	REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL	MULTI-MSMS	A375_MHC_IP_R2	2	431.2879638671875	3	431.574732	1291.70237	-0.16352	-7.0571E-05	-0.38292	-0.00016526	-0.54644	-0.00023583	431.5744853397663	67.851	0.2542	68.586	68.459	68.714	0.73511					6	4	2	0	0	0	0.73605	1	25734	25734		3.134	3.134	1	941560	+		40698	18069	29910	30148	39629	39629					0.06818491191938847
QFTEPFLDY	9	Unmodified	_QFTEPFLDY_					0	0	0			REV__HEPHL1|p.G1030E|1|0.34|ENSG00000181333|chr11:94110946-94110946|G/A|missense_variant	REV__HEPHL1|p.G1030E|1|0.34|ENSG00000181333|chr11:94110946-94110946|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	580.6689453125	2	580.268947	1158.52334	0.038652	2.2429E-05	-1.0922	-0.00063375	-1.0535	-0.00061132	580.2687344182401	107.72	1.1713	107.72	107.34	108.51	0					51	22	4	0	0	0	0.22528	1	39507	39507		36.127	9.2434	1	8881900	+		40699	26732	29911	30149	39630	39630					-0.04957973376122027
QFTEPFLDY	9	Unmodified	_QFTEPFLDY_					0	0	0			REV__HEPHL1|p.G1030E|1|0.34|ENSG00000181333|chr11:94110946-94110946|G/A|missense_variant	REV__HEPHL1|p.G1030E|1|0.34|ENSG00000181333|chr11:94110946-94110946|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	580.66845703125	2	580.268947	1158.52334	-0.37045	-0.00021496	-0.20307	-0.00011783	-0.57352	-0.0003328	580.2686363910984	106.99	0.86279	107.75	107.44	108.3	0.75719					32	16	3	0	0	0	0.44024	1	40399	40399		22.736	22.736	1	7724600	+		40700	26732	29911	30149	39631	39631					-0.04957973376122027
QFTEPFLDY	9	Unmodified	_QFTEPFLDY_					0	0	0			REV__HEPHL1|p.G1030E|1|0.34|ENSG00000181333|chr11:94110946-94110946|G/A|missense_variant	REV__HEPHL1|p.G1030E|1|0.34|ENSG00000181333|chr11:94110946-94110946|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	579.731201171875	2	580.268947	1158.52334	-0.37045	-0.00021496	-0.20307	-0.00011783	-0.57352	-0.0003328	580.2686363910984	106.99	0.86279	107.75	107.44	108.3	0.75719					32	16	3	0	0	0	0.73008	1	40484	40484		12.241	4.3305	1	7724600	+		40701	26732	29911	30149	39632	39632					-0.04957973376122027
QFTVKLERD	9	Unmodified	_QFTVKLERD_					0	0	0		ENST00000371953.7_1_10:89692859-89692916:+|nuORF	ENST00000371953.7_1_10:89692859-89692916:+|nuORF	ENST00000371953.7_1_10:89692859-89692916:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	379.94879150390625	3	379.208384	1134.60332	-0.091347	-3.464E-05	-1.2843	-0.000487	-1.3756	-0.00052164	379.20801578172893	40.812	0.509	41.586	41.183	41.692	0.77451					12	9	2	0	0	0	0.69179	1	15104	15104		21.59	6.633	1	830400			40702	11187	29912	30150	39633	39633					0.04140513017705416
QFTYPRPM	8	Unmodified	_QFTYPRPM_					0	0	0			REV__ENSG00000109265|ENST00000682029|CRACD	REV__ENSG00000109265|ENST00000682029|CRACD	MULTI-SECPEP	A375_MHC_IP_R2	2	519.9854736328125	2	520.25512	1038.49569	-0.61347	-0.00031916	0.80215	0.00041732	0.18868	9.8162E-05	520.2556524116134	108.6	0.76471	109.35	108.96	109.72	0.74683					27	14	3	0	0	0	0.94479	1	40992	40992		13.508	13.508	1	2157900	+		40703	17576	29913	30151	39634	39634					-0.022021551173565967
QFVAFSNMF	9	Unmodified	_QFVAFSNMF_					0	0	0			REV__nc|ENSG00000156535|Q6YHK3-3|CD109	REV__nc|ENSG00000156535|Q6YHK3-3|CD109	MULTI-SECPEP	A375_MHC_IP_R2	2	545.1536865234375	2	545.754953	1089.49535	-0.60973	-0.00033277	1.4265	0.0007785	0.81672	0.00044573	545.7570492898826	47.133	0.3068	47.894	47.766	48.073	0.76128					8	5	2	0	0	0	0.58271	1	17713	17713		20.454	0.039092	1	1041700	+		40704	19988	29914	30152	39635	39635					-0.045815748372206144
QFVLGEPQGY	10	Unmodified	_QFVLGEPQGY_					0	0	0		nc|ENSG00000116151|Q5T089-2|MORN1;ENSG00000116151|ENST00000378531|MORN1;ENST00000606372.5_1_1:2263981-2323005:-|nuORF	nc|ENSG00000116151|Q5T089-2|MORN1	nc|ENSG00000116151|Q5T089-2|MORN1	MULTI-SECPEP	A375_MHC_IP_R2	2	380.30126953125	3	379.857351	1136.55022	0.12666	4.8113E-05	0.75365	0.00028628	0.88031	0.00033439	379.8576017143008	44.124	0.75887	44.893	44.682	45.441	0.7691					23	14	2	0	0	0	0.9269	1	16537	16537		1.7423	0	1	2672100			40705	3377	29915	30153	39636	39636					-0.012588647649408813
QFYIGYDW	8	Unmodified	_QFYIGYDW_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	A375_MHC_IP_R2	2	546.19873046875	2	546.245275	1090.476	-1.3129	-0.00071716	-0.20169	-0.00011017	-1.5146	-0.00082733	546.2451573974902	33.817	0.75846	34.57	34.146	34.904	0.75225					38	14	4	0	0	0	0.77603	1	12003	12003		9.3474	0	1	30609000	+		40706	22555	29916	30154	39637	39637					-0.06562207856495661
QFYKRDQLI	9	Unmodified	_QFYKRDQLI_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	A375_MHC_IP_R1	1	404.62451171875	3	404.224146	1209.65061	-0.46155	-0.00018657	0.67311	0.00027209	0.21156	8.5517E-05	404.22436263450345	53.428	0.5603	53.428	53.301	53.861	0					14	10	2	0	0	0	0.60982	1	19075	19075		14.405	0.18721	1	4870900			40707	4172	29917	30155	39638	39638					0.054167922887017994
QFYKRDQLI	9	Unmodified	_QFYKRDQLI_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	404.224146	1209.65061	-0.46155	-0.00018657	0.67311	0.00027209	0.21156	8.5517E-05	404.22436263450345	53.428	0.5603	53.428	53.301	53.861	0	0.055678	0.00055494	NaN	14.405	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4870900			40708	4172	29917	30155							0.054167922887017994
QFYKRDQLI	9	Unmodified	_QFYKRDQLI_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MATCH	A375_MHC_IP_R2	2		3	404.224146	1209.65061	-0.44134	-0.0001784	0.093639	3.7851E-05	-0.3477	-0.00014055	404.5585161106324	52.564	0.45625	53.316	53.083	53.54	0.75225	-0.055678	-0.00014777	NaN	14.405	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1964600			40709	4172	29917	30155							0.054167922887017994
QGCSIAGSPV	10	Unmodified	_QGCSIAGSPV_					0	0	0			REV__ENST00000336798.11_2_1:31351134-31351443:-|nuORF	REV__ENST00000336798.11_2_1:31351134-31351443:-|nuORF	MSMS	A375_MHC_IP_R2	2	459.6688537597656	2	459.72111	917.427666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.4	1	104.17	103.67	104.67	0.76428								0	0	0	0.13504	1	39162	39162		32.305	3.8186	1		+		40710	23683	29918	30156	39639	39639					-0.03435024768020867
QGDDDKIYF	9	Unmodified	_QGDDDKIYF_					0	0	0		ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENST00000558975.1_1_15:90764883-90766973:+|nuORF	ENSG00000185033|ENST00000411539|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	MSMS	A375_MHC_IP_R2	2	550.671142578125	2	550.748379	1099.4822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.123	1	73.859	73.359	74.359	0.73541								0	0	0	0.15411	1	27757	27757		14.838	1.7958	1				40711	8633	29919	30157	39640	39640					-0.06355734415615188
QGDEKPKDF	9	Unmodified	_QGDEKPKDF_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	A375_MHC_IP_R2	2	532.22412109375	2	532.256371	1062.49819	-0.94961	-0.00050544	0.23362	0.00012434	-0.71599	-0.00038109	532.2565650474256	49.757	0.55994	50.511	50.294	50.854	0.75406					15	10	2	0	0	0	0.44024	1	18649	18649		22.736	3.4793	1	2668800	+		40712	21369	29920	30158	39641	39641					-0.030560281787074928
QGEEEFDMPQ	10	Unmodified	_QGEEEFDMPQ_					0	0	0		ENST00000572085.5_1_15:43707600-43785241:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1;ENST00000411772.5_2_15:43699583-43738985:-|nuORF	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	604.7030639648438	2	605.240061	1208.46557	-0.32057	-0.00019402	0.88021	0.00053274	0.55964	0.00033872	605.2406455323222	50.701	1.2205	50.701	50.254	51.475	0					35	23	2	0	0	0	0.91556	1	18234	18234		1.3295	0	1	1413500			40713	1437	29921	30159	39642	39642					-0.1303260336387666
QGEGAELVK	9	Unmodified	_QGEGAELVK_					0	0	0			REV__chrX:55221824-55222621|137|35.1|0.05|9.6|+|ENST00000374952|PAGE5,PAGE5	REV__chrX:55221824-55222621|137|35.1|0.05|9.6|+|ENST00000374952|PAGE5,PAGE5	MULTI-MSMS	A375_MHC_IP_R2	2	466.1476745605469	2	465.748182	929.481811	-1.0572	-0.00049239	0.3505	0.00016325	-0.70671	-0.00032915	465.74826083242	26.223	0.5587	26.882	26.703	27.262	0.65992					18	10	2	0	0	0	0.11629	1	8900	8900		47.749	1.7277	1	4842400	+		40714	15783	29922	30160	39643	39643					0.014248906551870277
QGEGAELVK	9	Unmodified	_QGEGAELVK_					0	0	0			REV__chrX:55221824-55222621|137|35.1|0.05|9.6|+|ENST00000374952|PAGE5,PAGE5	REV__chrX:55221824-55222621|137|35.1|0.05|9.6|+|ENST00000374952|PAGE5,PAGE5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	465.748182	929.481811	-1.0572	-0.00049239	0.3505	0.00016325	-0.70671	-0.00032915	465.74826083242	26.223	0.5587	26.882	26.703	27.262	0.65992	0.054816	0.00012311	NaN	47.749	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4842400	+		40715	15783	29922	30160							0.014248906551870277
QGELEKLN	8	Unmodified	_QGELEKLN_					0	0	0		ENST00000426925.5_1_3:15314864-15374612:-|nuORF;ENSG00000131370|ENST00000383791|SH3BP5	ENST00000426925.5_1_3:15314864-15374612:-|nuORF	ENST00000426925.5_1_3:15314864-15374612:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	465.1820068359375	2	465.748182	929.481811	-0.50934	-0.00023722	0.010232	4.7654E-06	-0.49911	-0.00023246	465.7481437241773	26.773	0.65438	26.773	26.575	27.229	0					21	12	2	0	0	0	0.46048	1	8038	8038		64.236	11.968	1	3870500			40716	4322	29923	30161	39644	39644					0.014248906551983964
QGGGGGGG	8	Unmodified	_QGGGGGGG_					0	0	0		HNRNPM|p.P399L|1|0.44|ENSG00000099783|chr19:8485624-8485624|C/T|missense_variant;HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant;nc|ENSG00000099783|P52272-2|HNRNPM;ENSG00000099783|ENST00000325495|HNRNPM;ENSG00000119318|ENST00000358015|RAD23B;nc|ENSG00000119318|P54727-2|RAD23B;nc|ENSG00000151322|Q8IXF0-4|NPAS3;nc|ENSG00000151322|Q8IXF0-2|NPAS3;nc|ENSG00000151322|Q8IXF0-3|NPAS3;ENSG00000151322|ENST00000356141|NPAS3;ENSG00000161671|ENST00000334976|EMC10	REV__ENSG00000112541|ENST00000539869|PDE10A;HNRNPM|p.S432Pfs*96|1|0.27|ENSG00000099783|chr19:8485722-8485722|T/-|frameshift_variant;ENSG00000119318|ENST00000358015|RAD23B;nc|ENSG00000151322|Q8IXF0-4|NPAS3;REV__ENSG00000054598|ENST00000645831|FOXC1;ENSG00000161671|ENST00000334976|EMC10;REV__nc|ENSG00000197451|Q99729-3|HNRNPAB	REV__ENSG00000112541|ENST00000539869|PDE10A	MULTI-SECPEP	A375_MHC_IP_R2	2	545.76171875	1	546.226665	545.219388	-0.78229	-0.00042731	1.9925	0.0010884	1.2103	0.00066107	546.2292773424124	83.032	0.20271	83.771	83.645	83.848	0.73962					5	3	2	0	0	0	0.972	1	31537	31537		0	0	1	639160			40717	17736;2081;3581;5895;16405;6483;22290	29924	30162	39645	39645					-0.07141265570089672
QGGLARITQ	9	Unmodified	_QGGLARITQ_					0	0	0		ENST00000485278.5_1_9:134386708-134386855:+|nuORF	ENST00000485278.5_1_9:134386708-134386855:+|nuORF	ENST00000485278.5_1_9:134386708-134386855:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	472.66912841796875	2	472.269616	942.524678	-0.23719	-0.00011202	-0.31277	-0.00014771	-0.54996	-0.00025973	472.26944266356986	35.547	0.81483	35.547	35.269	36.084	0					27	15	3	0	0	0	0.36834	1	11799	11799		26.268	3.5319	1	7437600			40718	12574	29925	30163	39646	39646					0.051117055032818826
QGIPIPEV	8	Unmodified	_QGIPIPEV_					0	0	0			REV__ENSG00000112981|ENST00000265191|NME5	REV__ENSG00000112981|ENST00000265191|NME5	MULTI-MSMS	A375_MHC_IP_R2	2	427.630126953125	2	426.744911	851.475269	-0.034079	-1.4543E-05	-0.089951	-3.8386E-05	-0.12403	-5.2929E-05	426.74487618417515	86.37	0.5621	87.103	86.845	87.407	0.733					23	10	3	0	0	0	0.70783	1	32907	32907		32.305	0.18852	1	2032500	+		40719	17762	29926	30164	39647	39647					0.04358997494466621
QGIPPELAQG	10	Unmodified	_QGIPPELAQG_					0	0	0		ENSG00000139865|ENST00000553443|TTC6;ENST00000533625.5_1_14:38165939-38343677:+|nuORF	ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	MULTI-MSMS	A375_MHC_IP_R1	1	505.1956787109375	2	505.269281	1008.52401	-0.29199	-0.00014753	-0.25293	-0.0001278	-0.54491	-0.00027533	505.2691427399884	37.607	0.30738	37.607	37.454	37.761	0					8	5	2	0	0	0	0.47255	1	12658	12658		29.841	11.467	1	1432000			40720	5115	29927	30165	39648	39648					0.02008866063579262
QGIPPELAQG	10	Unmodified	_QGIPPELAQG_					0	0	0		ENSG00000139865|ENST00000553443|TTC6;ENST00000533625.5_1_14:38165939-38343677:+|nuORF	ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	MULTI-MATCH	A375_MHC_IP_R2	2		2	505.269281	1008.52401	-1.2167	-0.00061475	0.39918	0.00020169	-0.81751	-0.00041306	505.2695419237882	36.768	0.20486	37.539	37.41	37.615	0.7709	-0.03428	0.00027246	NaN	29.841	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1173300			40721	5115	29927	30165							0.02008866063579262
QGKGIGKELM	10	Unmodified	_QGKGIGKELM_					0	0	0		tr|U7SPU4|U7SPU4_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01705PE=4SV=1	tr|U7SPU4|U7SPU4_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01705PE=4SV=1	tr|U7SPU4|U7SPU4_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01705PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	354.5987854003906	3	354.198831	1059.57467	0.14327	5.0746E-05	-0.00044979	-1.5931E-07	0.14282	5.0586E-05	354.19869205708403	21.109	0.8159	21.109	20.587	21.403	0					25	15	2	0	0	0	0.56082	1	5459	5459		23.801	2.2109	1	3111700			40722	29586	29928	30166	39649	39649					0.04726072116909563
QGKGIGKELM	10	Unmodified	_QGKGIGKELM_					0	0	0		tr|U7SPU4|U7SPU4_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01705PE=4SV=1	tr|U7SPU4|U7SPU4_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01705PE=4SV=1	tr|U7SPU4|U7SPU4_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01705PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	354.198831	1059.57467	0.14327	5.0746E-05	-0.00044979	-1.5931E-07	0.14282	5.0586E-05	354.19869205708403	21.109	0.8159	21.109	20.587	21.403	0	0	0	NaN	23.801	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3111700			40723	29586	29928	30166							0.04726072116909563
QGKKPAVILI	10	Unmodified	_QGKKPAVILI_					0	0	0			REV__ENSG00000163293|ENST00000295461|NIPAL1	REV__ENSG00000163293|ENST00000295461|NIPAL1	MULTI-SECPEP	A375_MHC_IP_R2	2	355.5791015625	3	356.237615	1065.69102	-0.49411	-0.00017602	-0.25111	-8.9454E-05	-0.74522	-0.00026548	356.23753930730754	38.832	0.35847	39.607	39.401	39.76	0.77451					12	6	3	0	0	0	0.94707	1	14326	14326		3.3196	1.5774	1	1030400	+		40724	20348	29929	30167	39650	39650					0.1607975867912046
QGKLQSSAPGW	11	Unmodified	_QGKLQSSAPGW_					0	0	0			REV__ENST00000454741.5_1_22:28396868-28397276:+|nuORF	REV__ENST00000454741.5_1_22:28396868-28397276:+|nuORF	MSMS	A375_MHC_IP_R1	1	579.8135986328125	2	579.798737	1157.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.52	1	100.52	100.02	101.02	0								0	0	0	0.16138	1	36948	36948		11.495	2.7493	1		+		40725	24923	29930	30168	39651	39651					0.010433423578888323
QGKMPWIEY	9	Unmodified	_QGKMPWIEY_					0	0	0		ENSG00000146267|ENST00000389677|FAXC	ENSG00000146267|ENST00000389677|FAXC	ENSG00000146267|ENST00000389677|FAXC	MULTI-MSMS	A375_MHC_IP_R2	2	577.2218627929688	2	576.281334	1150.54812	-0.40346	-0.00023251	-0.13945	-8.0365E-05	-0.54292	-0.00031287	576.2823044145636	51.602	0.76278	52.354	51.966	52.729	0.75225					45	14	5	0	0	0	0.58047	1	19425	19425		15.847	1.9411	1	8730300			40726	5613	29931	30169	39652	39652					-0.02113616774431648
QGLGCDACGY	10	Unmodified	_QGLGCDACGY_					0	0	0		ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	MSMS	A375_MHC_IP_R1	1	493.6591491699219	2	493.688952	985.363352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.682	1	51.682	51.182	52.182	0								0	0	0	0.15308	1	18353	18353		10.824	4.6181	1				40727	7584	29932	30170	39653	39653					-0.1299154791648789
QGLGEAFDH	9	Unmodified	_QGLGEAFDH_					0	0	0			REV__DOCK6|p.P1186L|1|0.59|ENSG00000130158|chr19:11217385-11217385|G/A|missense_variant	REV__DOCK6|p.P1186L|1|0.59|ENSG00000130158|chr19:11217385-11217385|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	487.622314453125	2	487.222331	972.430109	-0.013812	-6.7297E-06	-0.1274	-6.2071E-05	-0.14121	-6.88E-05	487.2222072988622	38.736	0.50812	38.736	38.475	38.983	0					16	9	2	0	0	0	0.2264	1	13180	13180		36.044	0	1	6366300	+		40728	16026	29933	30171	39654	39654					-0.05720853038712903
QGLGEAFDH	9	Unmodified	_QGLGEAFDH_					0	0	0			REV__DOCK6|p.P1186L|1|0.59|ENSG00000130158|chr19:11217385-11217385|G/A|missense_variant	REV__DOCK6|p.P1186L|1|0.59|ENSG00000130158|chr19:11217385-11217385|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	487.222331	972.430109	-0.82535	-0.00040213	0.11687	5.6943E-05	-0.70848	-0.00034519	487.2223450443172	38.006	0.46294	38.781	38.534	38.997	0.77451	0.022556	0.00011978	NaN	36.044	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7893300	+		40729	16026	29933	30171							-0.05720853038712903
QGLIQEIND	9	Unmodified	_QGLIQEIND_					0	0	0		ENST00000534917.1_1_12:27807636-27809701:+|nuORF	ENST00000534917.1_1_12:27807636-27809701:+|nuORF	ENST00000534917.1_1_12:27807636-27809701:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	514.6739501953125	2	515.264196	1028.51384	-0.77507	-0.00039937	0.01283	6.6109E-06	-0.76224	-0.00039276	515.2643359403133	27.771	0.50617	28.45	28.2	28.706	0.67857					11	9	2	0	0	0	0.5212	1	9536	9536		20.415	2.2682	1	1620200			40730	13218	29934	30172	39655	39655					0.0007225833833217621
QGLPEDPHGV	10	Unmodified	_QGLPEDPHGV_					0	0	0		ENST00000571689.1_1_17:5138293-5138539:+|nuORF	ENST00000571689.1_1_17:5138293-5138539:+|nuORF	ENST00000571689.1_1_17:5138293-5138539:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	524.6949462890625	2	524.756538	1047.49852	-0.43613	-0.00022886	0.038598	2.0255E-05	-0.39754	-0.00020861	524.7566266992488	63.911	0.96629	64.651	64.191	65.157	0.74022					44	18	3	0	0	0	0.70793	1	24417	24417		8.7454	8.7454	1	5154500			40731	13610	29935	30173	39656	39656					-0.023326084588461526
QGLPFKAI	8	Unmodified	_QGLPFKAI_					0	0	0		ENSG00000184811|ENST00000333813|TRARG1	ENSG00000184811|ENST00000333813|TRARG1	ENSG00000184811|ENST00000333813|TRARG1	MULTI-MSMS	A375_MHC_IP_R2	2	437.66326904296875	2	437.263271	872.511988	-0.3063	-0.00013393	0.32417	0.00014175	0.017868	7.813E-06	437.2631554142131	72.978	1.0675	73.714	73.226	74.294	0.7354					48	20	3	0	0	0	0.38921	1	27699	27699		53.576	3.9067	1	3303500			40732	8610	29936	30174	39657	39657					0.07063294111037521
QGLVDREKGDF	11	Unmodified	_QGLVDREKGDF_					0	0	0		nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;ENST00000398792.3_1_10:73483820-73501738:+|nuORF	nc|ENSG00000107736|Q9H251-4|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-SECPEP	A375_MHC_IP_R2	2	632.7191772460938	2	632.320034	1262.62551	-0.92179	-0.00058287	0.12483	7.8935E-05	-0.79696	-0.00050393	632.3199785974848	66.552	0.61374	67.288	66.983	67.597	0.73631					29	11	3	0	0	0	0.98673	1	25187	25187		14.405	0	1	6203500			40733	2753	29937	30175	39658	39658					0.0047069269546682335
QGPTLKTL	8	Unmodified	_QGPTLKTL_					0	0	0			REV__ENST00000507792.1_1_17:48551388-48551910:+|nuORF	REV__ENST00000507792.1_1_17:48551388-48551910:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	429.65814208984375	2	429.258185	856.501818	-0.35167	-0.00015096	0.33854	0.00014532	-0.013127	-5.635E-06	429.2582745851914	37.938	0.60944	37.938	37.71	38.319	0					18	11	2	0	0	0	0.73227	1	12831	12831		37.974	0	1	9600000	+		40734	25572	29938	30176	39659	39659					0.0678268638581585
QGQARLTAL	9	Unmodified	_QGQARLTAL_					0	0	0			REV__ENSG00000167487|ENST00000300976|KLHL26	REV__ENSG00000167487|ENST00000300976|KLHL26	MULTI-MSMS	A375_MHC_IP_R1	1	957.9468994140625	1	957.547605	956.540328	-0.29	-0.00027769	-0.16623	-0.00015918	-0.45624	-0.00043687	957.5472365126205	149.45	1.4984	149.45	148.51	150	0					92	52	2	0	0	0	0.77827	1	57078	57078		0	0	1	161870	+		40735	20762	29939	30177	39660	39660					0.060319920202914545
QGQARLTAL	9	Unmodified	_QGQARLTAL_					0	0	0			REV__ENSG00000167487|ENST00000300976|KLHL26	REV__ENSG00000167487|ENST00000300976|KLHL26	MULTI-MSMS	A375_MHC_IP_R2	2	957.9474487304688	1	957.547605	956.540328	0.064099	6.1378E-05	-0.42066	-0.0004028	-0.35656	-0.00034142	957.547031496837	149.66	1.2649	149.68	148.75	150.01	0.01825					97	52	2	0	0	0	0.77827	1	58079	58079		0	0	1	133660	+		40736	20762	29939	30177	39661	39661					0.060319920202914545
QGQARLTAL	9	Unmodified	_QGQARLTAL_					0	0	0			REV__ENSG00000167487|ENST00000300976|KLHL26	REV__ENSG00000167487|ENST00000300976|KLHL26	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	957.547605	956.540328	-0.29	-0.00027769	-0.16623	-0.00015918	-0.45624	-0.00043687	957.5472365126205	149.45	1.4984	149.45	148.51	150	0	-0.11169	0.00012157	NaN	0	92	52	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161870	+		40737	20762	29939	30177							0.060319920202914545
QGQARLTAL	9	Unmodified	_QGQARLTAL_					0	0	0			REV__ENSG00000167487|ENST00000300976|KLHL26	REV__ENSG00000167487|ENST00000300976|KLHL26	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	957.547605	956.540328	0.064099	6.1378E-05	-0.42066	-0.0004028	-0.35656	-0.00034142	957.547031496837	149.66	1.2649	149.68	148.75	150.01	0.01825	0.11169	-0.00012206	NaN	0	97	52	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133660	+		40738	20762	29939	30177							0.060319920202914545
QGQLTEMIND	10	Unmodified	_QGQLTEMIND_					0	0	0			REV__ENSG00000154553|ENST00000284767|PDLIM3	REV__ENSG00000154553|ENST00000284767|PDLIM3	MULTI-MSMS	A375_MHC_IP_R1	1	574.1900024414062	2	574.766245	1147.51794	-0.11038	-6.344E-05	0.091789	5.2757E-05	-0.018587	-1.0683E-05	574.7661931493242	52.016	0.81229	52.016	51.575	52.387	0					20	14	2	0	0	0	0.59108	1	18319	18319		21.537	0	1	3670100	+		40739	19889	29940	30178	39662	39662					-0.049920202302701
QGQWQELS	8	Unmodified	_QGQWQELS_					0	0	0		ENST00000561234.5_2_15:40751406-40751499:+|nuORF	ENST00000561234.5_2_15:40751406-40751499:+|nuORF	ENST00000561234.5_2_15:40751406-40751499:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	487.622314453125	2	488.230156	974.445759	-0.37216	-0.0001817	0.040278	1.9665E-05	-0.33188	-0.00016204	488.23016132177816	38.548	0.61218	38.548	38.168	38.78	0					26	11	3	0	0	0	0.97144	1	13180	13180		14.582	0	1	7286000			40740	13507	29941	30179	39663	39663					-0.04248566521664543
QGQWQELS	8	Unmodified	_QGQWQELS_					0	0	0		ENST00000561234.5_2_15:40751406-40751499:+|nuORF	ENST00000561234.5_2_15:40751406-40751499:+|nuORF	ENST00000561234.5_2_15:40751406-40751499:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	487.621826171875	2	488.230156	974.445759	-0.76452	-0.00037326	-0.32974	-0.00016099	-1.0943	-0.00053425	488.22996074090696	37.851	0.56441	38.625	38.382	38.946	0.77451					29	10	3	0	0	0	0.97144	1	13948	13948		9.3474	0	1	7566500			40741	13507	29941	30179	39664	39664					-0.04248566521664543
QGRALKIAAA	10	Unmodified	_QGRALKIAAA_					0	0	0		ENSG00000144648|ENST00000422265|ACKR2	ENSG00000144648|ENST00000422265|ACKR2	ENSG00000144648|ENST00000422265|ACKR2	MULTI-MSMS	A375_MHC_IP_R1	1	999.010986328125	1	998.61054	997.603263	-0.14771	-0.0001475	-0.17634	-0.00017609	-0.32405	-0.0003236	998.6103406999712	145.27	0.3931	145.27	145.07	145.46	0					39	25	2	0	0	0	0.72747	1	55691	55691		0	0	1	141850			40742	5502	29942	30180	39665	39665					0.10436557808338875
QGRALKIAAA	10	Unmodified	_QGRALKIAAA_					0	0	0		ENSG00000144648|ENST00000422265|ACKR2	ENSG00000144648|ENST00000422265|ACKR2	ENSG00000144648|ENST00000422265|ACKR2	MULTI-MSMS	A375_MHC_IP_R2	2	999.0103149414062	1	998.61054	997.603263	0.20061	0.00020034	-0.51157	-0.00051086	-0.31096	-0.00031053	998.6098168738029	145.32	0.46606	145.34	145.09	145.56	0.021408					46	37	2	0	0	0	0.72747	1	56733	56733		0	0	1	180930			40743	5502	29942	30180	39666	39666					0.10436557808338875
QGRQPKTV	8	Unmodified	_QGRQPKTV_					0	0	0		nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	MULTI-MSMS	A375_MHC_IP_R2	2	457.6636657714844	2	457.264333	912.514114	-0.25959	-0.0001187	0.046537	2.128E-05	-0.21305	-9.742E-05	457.2642448379316	104.53	4.78	105.29	103.48	108.26	0.76308					181	93	3	0	0	0	0.77603	1	39081	39081		9.3474	9.3474	1	10426000			40744	8246	29943	30181	39667	39667					0.05435722848858404
QGSWSEPDL	9	Unmodified	_QGSWSEPDL_					0	0	0		ENST00000530197.5_1_11:6587352-6593213:+|nuORF;ENST00000525883.5_1_11:6587352-6591461:+|nuORF	ENST00000530197.5_1_11:6587352-6593213:+|nuORF	ENST00000530197.5_1_11:6587352-6593213:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	509.65838623046875	2	509.727446	1017.44034	-0.62206	-0.00031708	-3.5379	-0.0018034	-4.1599	-0.0021204	509.72631401154996	86.548	0.65882	86.548	86.072	86.73	0					19	12	2	0	0	0	0.27715	1	31697	31697		32.305	9.1571	1	2969300			40745	13147	29944	30182	39668	39668					-0.06768290104139396
QGSWSEPDL	9	Unmodified	_QGSWSEPDL_					0	0	0		ENST00000530197.5_1_11:6587352-6593213:+|nuORF;ENST00000525883.5_1_11:6587352-6591461:+|nuORF	ENST00000530197.5_1_11:6587352-6593213:+|nuORF	ENST00000530197.5_1_11:6587352-6593213:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	509.65771484375	2	509.727446	1017.44034	-0.57092	-0.00029101	-3.8844	-0.00198	-4.4553	-0.002271	509.72586293116916	85.764	0.5581	86.5	86.188	86.746	0.73601					16	10	2	0	0	0	0.27715	1	32595	32595		32.305	14.159	1	2757700			40746	13147	29944	30182	39669	39669					-0.06768290104139396
QGTGRLGAWAS	11	Unmodified	_QGTGRLGAWAS_					0	0	0			REV__nc|ENSG00000099866|Q13477-4|MADCAM1	REV__nc|ENSG00000099866|Q13477-4|MADCAM1	MULTI-MSMS	A375_MHC_IP_R2	2	552.682861328125	2	552.283254	1102.55196	-1.228	-0.00067821	0.13472	7.4401E-05	-1.0933	-0.00060381	552.2833217429188	33.526	1.8276	34.278	32.975	34.803	0.75225					65	35	4	0	0	0	0.4047	1	11998	11998		38.615	7.3464	1	74544000	+		40747	17031	29945	30183	39670	39670					0.004781890436333924
QGVCWTCIPN	10	Unmodified	_QGVCWTCIPN_					0	0	0			REV__ENST00000594780.1_1_19:6361708-6364854:+|nuORF	REV__ENST00000594780.1_1_19:6361708-6364854:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	561.1476440429688	2	560.749344	1119.48414	-0.46632	-0.00026149	-1.6009	-0.00089768	-2.0672	-0.0011592	560.7484221439739	110.22	0.71601	110.95	110.63	111.34	0.73692					40	13	4	0	0	0	0.66308	1	41556	41556		16.149	4.5088	1	4242100	+		40748	26465	29946	30184	39671	39671					-0.07082720203015924
QGVLEVLSEV	10	Unmodified	_QGVLEVLSEV_					0	0	0		ENSG00000131697|ENST00000378156|NPHP4;nc|ENSG00000131697|O75161-2|NPHP4	ENSG00000131697|ENST00000378156|NPHP4	ENSG00000131697|ENST00000378156|NPHP4	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1974487304688	2	536.797872	1071.58119	-0.59371	-0.0003187	-0.050697	-2.7214E-05	-0.64441	-0.00034592	536.7978143042488	56.573	0.6101	56.573	56.295	56.905	0					22	11	2	0	0	0	0.24752	1	20309	20309		45.7	0	1	11216000			40749	4342	29947	30185	39672	39672					0.0482628854927043
QGVSALAAGQ	10	Unmodified	_QGVSALAAGQ_					0	0	0			REV__ENSG00000130287|ENST00000252575|NCAN	REV__ENSG00000130287|ENST00000252575|NCAN	MSMS	A375_MHC_IP_R1	1	451.1610412597656	2	451.240524	900.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.659	1	32.659	32.159	33.159	0								0	0	0	0.11841	1	10573	10573		40.239	5.8375	1		+		40750	18529	29948	30186	39673	39673					0.012280238579819525
QGYRWCLH	8	Unmodified	_QGYRWCLH_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-MSMS	A375_MHC_IP_R1	1	532.200439453125	2	531.750536	1061.48652	-0.68353	-0.00036347	-2.1045	-0.0011191	-2.7881	-0.0014826	531.7501072579327	68.657	0.70983	68.657	68.26	68.969	0					28	13	3	0	0	0	0.77123	1	24834	24834		14.582	2.0501	1	2666600			40751	2143	29949	30187	39674	39674					-0.041765036830383906
QHEHIVKF	8	Unmodified	_QHEHIVKF_					0	0	0		ENST00000559680.1_1_15:88474433-88483955:-|nuORF;ETV6-NTRK3|2|fusion;ETV6-NTRK3|1|fusion;nc|ENSG00000148053|Q16620-6|NTRK2;nc|ENSG00000140538|Q16288-5|NTRK3;nc|ENSG00000148053|Q16620|NTRK2;nc|ENSG00000140538|Q16288-3|NTRK3;nc|ENSG00000140538|Q16288-4|NTRK3;ENSG00000148053|ENST00000277120|NTRK2;ENSG00000140538|ENST00000629765|NTRK3	ENST00000559680.1_1_15:88474433-88483955:-|nuORF	ENST00000559680.1_1_15:88474433-88483955:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	518.970947265625	2	519.279983	1036.54541	-0.44279	-0.00022993	3.5724	0.0018551	3.1297	0.0016252	519.7825355133972	43.541	0.35556	43.541	43.351	43.706	0					10	6	2	0	0	0	0.972	1	15118	15118		7.9102	3.9658	1	1320600			40752	5166	29950	30188	39675	39675					0.028602958829424097
QHFSIEPQL	9	Unmodified	_QHFSIEPQL_					0	0	0			REV__ENST00000551271.5_1_14:105884588-105885396:-|nuORF	REV__ENST00000551271.5_1_14:105884588-105885396:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	550.7396240234375	2	549.782556	1097.55056	-0.42808	-0.00023535	0.67274	0.00036986	0.24466	0.00013451	549.7823731420997	70.432	0.81679	70.432	70.085	70.902	0					39	15	3	0	0	0	0.41409	1	25659	25659		24.021	4.7636	1	22882000	+		40753	26043	29951	30189	39676	39676					0.005685549549070856
QHILSLFRSI	10	Unmodified	_QHILSLFRSI_					0	0	0		nc|ENSG00000177354|Q711Q0-3|CEFIP	nc|ENSG00000177354|Q711Q0-3|CEFIP	nc|ENSG00000177354|Q711Q0-3|CEFIP	MULTI-MSMS	A375_MHC_IP_R1	1	405.6112365722656	3	405.239907	1212.69789	-0.46238	-0.00018737	0.42322	0.00017151	-0.039154	-1.5867E-05	405.24002463198184	40.923	0.65656	40.923	40.609	41.266	0					25	12	3	0	0	0	0.71455	1	14199	14199		5.7834	1.9071	1	2542600			40754	14784	29952	30190	39677	39677					0.10005071559726275
QHILSYSQPD	10	Unmodified	_QHILSYSQPD_					0	0	0			REV__nc|ENSG00000148200|Q15406-3|NR6A1	REV__nc|ENSG00000148200|Q15406-3|NR6A1	MULTI-SECPEP	A375_MHC_IP_R2	2	594.3729248046875	2	594.288202	1186.56185	-0.90928	-0.00054038	0.14734	8.756E-05	-0.76195	-0.00045282	594.2882600493465	23.039	0.71338	23.669	23.215	23.928	0.63014					17	13	3	0	0	0	0.92957	1	7404	7404		6.2058	0	1	2901000	+		40755	19617	29953	30191	39678	39678					-0.023966677416183302
QHKVRNEKW	9	Unmodified	_QHKVRNEKW_					0	0	0			REV__MYO1F|p.E597K|1|0.24|ENSG00000142347|chr19:8536959-8536959|C/T|missense_variant	REV__MYO1F|p.E597K|1|0.24|ENSG00000142347|chr19:8536959-8536959|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	408.934326171875	3	408.891389	1223.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.042	1	26.701	26.201	27.201	0.65992								0	0	0	0.15486	1	8764	8764		7.609	3.0801	1		+		40756	27067	29954	30192	39679	39679					0.049458460973028195
QHLALLNWL	9	Unmodified	_QHLALLNWL_					0	0	0			REV__nc|ENSG00000236764|O60397|COX7A2P2	REV__nc|ENSG00000236764|O60397|COX7A2P2	MULTI-SECPEP	A375_MHC_IP_R2	2	369.5977783203125	3	369.881831	1106.62366	0.068939	2.5499E-05	0.024593	9.0964E-06	0.093532	3.4596E-05	369.88159898822283	35.395	0.3028	36.158	35.98	36.283	0.76338					9	5	2	0	0	0	0.76187	1	12778	12778		4.5289	0	1	1966400	+		40757	27512	29955	30193	39680	39680					0.07461728468183537
QHLRETQRLRL	11	Unmodified	_QHLRETQRLRL_					0	0	0			REV__nc|ENSG00000102890|Q96BJ8-2|ELMO3	REV__nc|ENSG00000102890|Q96BJ8-2|ELMO3	MULTI-SECPEP	A375_MHC_IP_R1	1	483.2420349121094	3	483.951419	1448.83243	-0.6222	-0.00030112	-0.4688	-0.00022688	-1.091	-0.00052799	483.9511679505548	138	0.76759	138	137.84	138.61	0					22	14	3	0	0	0	1.0015	1	53218	53218		0.094841	0	1	2116100	+		40758	17237	29956	30194	39681	39681					0.12596525034291517
QHLRFLEFYKK	11	Unmodified	_QHLRFLEFYKK_					0	0	0		ENSG00000119698|ENST00000304338|PPP4R4	ENSG00000119698|ENST00000304338|PPP4R4	ENSG00000119698|ENST00000304338|PPP4R4	MSMS	A375_MHC_IP_R1	1	754.9197387695312	2	754.922261	1507.82997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.85	1	131.85	131.35	132.35	0								0	0	0	0.16307	1	50836	50836		2.7352	1.2533	1				40759	3613	29957	30195	39682	39682					0.09636676576633363
QHMVDTQH	8	Unmodified	_QHMVDTQH_					0	0	0			REV__ENSG00000063438|ENST00000684583|AHRR	REV__ENSG00000063438|ENST00000684583|AHRR	MSMS	A375_MHC_IP_R1	1	498.1632385253906	2	498.221808	994.429063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.994	1	64.994	64.494	65.494	0								0	0	0	0.16876	1	23526	23526		14.582	0	1		+		40760	16468	29958	30196	39683	39683					-0.0683739067925444
QHNEHEDQH	9	Unmodified	_QHNEHEDQH_					0	0	0		nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28;ENST00000510131.1_1_5:73090204-73091224:+|nuORF;nc|ENSG00000214944|Q8N1W1-2|ARHGEF28	nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	MSMS	A375_MHC_IP_R2	2	391.75482177734375	3	391.827114	1172.45951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.572	1	19.175	18.675	19.675	0.60308								0	0	0	0.15486	1	5532	5532		0	0	1				40761	9632	29959	30197	39684	39684					-0.11981940760529142
QHRVRRAMC	9	Unmodified	_QHRVRRAMC_					0	0	0		ENSG00000166856|ENST00000300098|GPR182	ENSG00000166856|ENST00000300098|GPR182	ENSG00000166856|ENST00000300098|GPR182	MULTI-MSMS	A375_MHC_IP_R2	2	1156.99609375	1	1156.59386	1155.58658	0.342	0.00039556	0.80799	0.00093452	1.15	0.0013301	1156.594616851795	146.04	0.22267	146.06	145.94	146.17	0.021408					46	29	2	0	0	0	0.7724	1	56911	56911		0.52476	0	1	135200			40762	7121	29960	30198	39685	39685					0.015014103791145317
QIAFTGTTF	9	Unmodified	_QIAFTGTTF_					0	0	0		nc|ENSG00000138744|Q02083-3|NAAA;nc|ENSG00000138744|Q02083-2|NAAA;ENSG00000138744|ENST00000286733|NAAA	nc|ENSG00000138744|Q02083-3|NAAA	nc|ENSG00000138744|Q02083-3|NAAA	MULTI-MSMS	A375_MHC_IP_R1	1	493.2079772949219	2	493.2531	984.491647	-0.35342	-0.00017433	0.10035	4.9498E-05	-0.25307	-0.00012483	493.25302073997267	77.411	0.55711	77.411	77.133	77.69	0					22	10	3	0	0	0	0.05754	2	28260	28227;28260		61.357	21.4	1	6011200			40763	5026	29961	30199	39686;39687	39687					-0.0012192133941653083
QIAFTGTTF	9	Unmodified	_QIAFTGTTF_					0	0	0		nc|ENSG00000138744|Q02083-3|NAAA;nc|ENSG00000138744|Q02083-2|NAAA;ENSG00000138744|ENST00000286733|NAAA	nc|ENSG00000138744|Q02083-3|NAAA	nc|ENSG00000138744|Q02083-3|NAAA	MULTI-MSMS	A375_MHC_IP_R2	2	493.20806884765625	2	493.2531	984.491647	-0.49583	-0.00024457	-0.073591	-3.6299E-05	-0.56942	-0.00028087	493.2530650808721	76.568	0.55943	77.308	77.045	77.604	0.74052					23	10	3	0	0	0	0.05754	2	29044	29044;29082		61.357	21.4	1	3436700			40764	5026	29961	30199	39688;39689	39688					-0.0012192133941653083
QICKEMQEV	9	Unmodified	_QICKEMQEV_					0	0	0			REV__nc|ENSG00000126777|Q86UP2-2|KTN1	REV__nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	A375_MHC_IP_R1	1	554.6620483398438	2	554.262284	1106.51002	-0.80416	-0.00044572	0.11618	6.4393E-05	-0.68798	-0.00038132	554.2622539030806	32.659	0.35186	32.659	32.485	32.836	0					15	6	3	0	0	0	0.070818	1	10581	10581		56.177	0	1	3895400	+		40765	18396	29962	30200	39690	39690					-0.03897870751393384
QIDFFDPTF	9	Unmodified	_QIDFFDPTF_					0	0	0		ENSG00000025039|ENST00000369415|RRAGD	ENSG00000025039|ENST00000369415|RRAGD	ENSG00000025039|ENST00000369415|RRAGD	MULTI-SECPEP	A375_MHC_IP_R1	1	565.6630249023438	2	565.263665	1128.51278	-0.30715	-0.00017362	-0.16953	-9.5828E-05	-0.47667	-0.00026945	565.2632342673812	56.741	0.56005	56.741	56.447	57.007	0					16	10	2	0	0	0	0.53748	1	20383	20383		30.637	5.6456	1	1409200			40766	1085	29963	30201	39691	39691					-0.04633956030579611
QIDFFDPTF	9	Unmodified	_QIDFFDPTF_					0	0	0		ENSG00000025039|ENST00000369415|RRAGD	ENSG00000025039|ENST00000369415|RRAGD	ENSG00000025039|ENST00000369415|RRAGD	MULTI-SECPEP	A375_MHC_IP_R2	2	565.6627197265625	2	565.263665	1128.51278	-0.6134	-0.00034673	-0.45676	-0.00025819	-1.0702	-0.00060492	565.2633849597597	55.884	0.40875	56.634	56.438	56.847	0.75014					13	7	2	0	0	0	0.4261	1	21126	21126		37.974	0	1	2254800			40767	1085	29963	30201	39692	39692					-0.04633956030579611
QIDGDFEDY	9	Unmodified	_QIDGDFEDY_					0	0	0		nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	MULTI-MSMS	A375_MHC_IP_R2	2	551.6215209960938	2	551.222194	1100.42983	-0.86298	-0.00047569	1.2942	0.00071341	0.43126	0.00023772	551.2222251478767	72.736	0.96468	73.472	72.922	73.887	0.73541					32	18	3	0	0	0	0.02559	1	27552	27552		78.728	40.754	1	3874100			40768	9458	29964	30202	39693	39693					-0.11636317549209707
QIDGTLSTI	9	Unmodified	_QIDGTLSTI_					0	0	0		ENSG00000101421|ENST00000217402|CHMP4B;nc|ENSG00000258469|P59074|CHMP4BP1;ENSG00000164695|ENST00000297265|CHMP4C	ENSG00000101421|ENST00000217402|CHMP4B	ENSG00000101421|ENST00000217402|CHMP4B	MULTI-SECPEP	A375_MHC_IP_R1	1	474.6552429199219	2	474.25584	946.497126	-0.48422	-0.00022964	0.51286	0.00024323	0.028643	1.3584E-05	474.25580333631126	74.583	0.60992	74.583	74.4	75.009	0					25	11	3	0	0	0	0.011451	1	27163	27163		107.19	14.696	1	4560400			40769	2292	29965	30203	39694	39694					0.021737574523854164
QIDGTLSTI	9	Unmodified	_QIDGTLSTI_					0	0	0		ENSG00000101421|ENST00000217402|CHMP4B;nc|ENSG00000258469|P59074|CHMP4BP1;ENSG00000164695|ENST00000297265|CHMP4C	ENSG00000101421|ENST00000217402|CHMP4B	ENSG00000101421|ENST00000217402|CHMP4B	MULTI-SECPEP	A375_MHC_IP_R2	2	474.6553039550781	2	474.25584	946.497126	-0.53298	-0.00025277	0.51839	0.00024585	-0.014584	-6.9167E-06	474.25590619162574	73.853	0.76413	74.591	74.296	75.06	0.73752					24	14	3	0	0	0	0.025235	1	28015	28015		107.19	14.696	1	6186200			40770	2292	29965	30203	39695	39695					0.021737574523854164
QIDQSLAMF	9	Unmodified	_QIDQSLAMF_					0	0	0			REV__nc|ENSG00000135387|Q14444-2|CAPRIN1	REV__nc|ENSG00000135387|Q14444-2|CAPRIN1	MSMS	A375_MHC_IP_R2	2	526.6552734375	2	526.757692	1051.50083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.452	1	61.197	60.697	61.697	0.74503								0	0	0	0.1008	1	22890	22890		41.84	0	1		+		40771	18847	29966	30204	39696	39696					-0.022858960454186672
QIEEAGWSY	9	Unmodified	_QIEEAGWSY_					0	0	0		ENST00000547581.5_1_12:48529049-48539488:+|nuORF;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;nc|ENSG00000152556|P08237-2|PFKM	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	542.142822265625	2	541.743096	1081.47164	-0.89769	-0.00048631	0.44404	0.00024056	-0.45365	-0.00024576	541.7431367948651	74.814	0.60706	75.551	75.315	75.922	0.73751					14	11	2	0	0	0	0.41434	1	28426	28426		39.95	23.007	1	1355800			40772	5973	29967	30205	39697	39697					-0.06583717070043349
QIEGSDPSFNY	11	Unmodified	_QIEGSDPSFNY_					0	0	0		nc|ENSG00000151458|Q9ULJ7-2|ANKRD50;ENSG00000151458|ENST00000504087|ANKRD50	nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	MULTI-MSMS	A375_MHC_IP_R1	1	629.175048828125	2	628.775125	1255.5357	-0.84408	-0.00053074	0.050915	3.2014E-05	-0.79316	-0.00049872	628.7750331013115	68.438	0.60947	68.438	68.108	68.717	0					19	11	2	0	0	0	0.00033946	1	24803	24803		117.76	91.492	1	3739100			40773	5906	29968	30206	39698	39698					-0.08184981703743688
QIEGSDPSFNY	11	Unmodified	_QIEGSDPSFNY_					0	0	0		nc|ENSG00000151458|Q9ULJ7-2|ANKRD50;ENSG00000151458|ENST00000504087|ANKRD50	nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	MULTI-MSMS	A375_MHC_IP_R2	2	629.1748657226562	2	628.775125	1255.5357	-0.74287	-0.0004671	-0.6929	-0.00043568	-1.4358	-0.00090277	628.7731675332032	67.848	0.96696	68.583	68.204	69.171	0.73512					33	18	3	0	0	0	0.00033946	1	25722	25722		117.76	79.787	1	2875100			40774	5906	29968	30206	39699	39699					-0.08184981703743688
QIEKRKLREKR	11	Unmodified	_QIEKRKLREKR_					0	0	0		ENSG00000177425|ENST00000328827|PAWR;ENST00000547571.1_1_12:80062185-80083760:-|nuORF;ENST00000547016.1_1_12:80082236-80083760:-|nuORF;ENST00000550006.1_1_12:80014983-80083760:-|nuORF	ENSG00000177425|ENST00000328827|PAWR	ENSG00000177425|ENST00000328827|PAWR	MULTI-MSMS	A375_MHC_IP_R2	2	742.8623657226562	2	742.462616	1482.91068	-0.65789	-0.00048846	-0.29852	-0.00022164	-0.95641	-0.0007101	742.4631542361731	140	0.46245	140.06	139.8	140.26	0.059906					36	8	5	0	0	0	0.73934	1	54797	54797		0	0	1	14622000			40775	8081	29969	30207	39700	39700					0.18853957619512585
QIENLKQQL	9	Unmodified	_QIENLKQQL_					0	0	0		nc|ENSG00000118197|Q5T1V6-2|DDX59;ENSG00000118197|ENST00000331314|DDX59	nc|ENSG00000118197|Q5T1V6-2|DDX59	nc|ENSG00000118197|Q5T1V6-2|DDX59	MULTI-SECPEP	A375_MHC_IP_R1	1	557.7161254882812	2	557.316763	1112.61897	-0.51536	-0.00028722	-0.22943	-0.00012787	-0.7448	-0.00041509	557.316398743225	46.211	0.55415	46.211	45.941	46.495	0					23	10	4	0	0	0	0.028087	1	16193	16193		106.94	10.829	1	4583900			40776	3530	29970	30208	39701	39701					0.06716799534751772
QIEQISEEK	9	Unmodified	_QIEQISEEK_					0	0	0			REV__DPF3|p.E135K|1|0.37|ENSG00000205683|chr14:72731833-72731833|C/T|missense_variant	REV__DPF3|p.E135K|1|0.37|ENSG00000205683|chr14:72731833-72731833|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	369.2586364746094	3	368.524149	1102.55062	-0.53453	-0.00019699	0.82261	0.00030315	0.28808	0.00010617	368.52436069827934	28.931	0.19607	29.63	29.534	29.73	0.69872					7	3	3	0	0	0	0.69179	1	10085	10085		16.566	3.6933	1	4415700	+		40777	16029	29971	30209	39702	39702					0.00344510164222811
QIESVTGYSG	10	Unmodified	_QIESVTGYSG_					0	0	0			REV__ENSG00000186130|ENST00000373659|ZBTB6	REV__ENSG00000186130|ENST00000373659|ZBTB6	MULTI-SECPEP	A375_MHC_IP_R2	2	519.9854736328125	2	520.748379	1039.4822	-0.72167	-0.00037581	3.3973	0.0017691	2.6756	0.0013933	521.2504873993365	80.902	0.20428	81.647	81.52	81.724	0.74474					5	3	2	0	0	0	0.8528	1	30743	30743		21.537	5.6898	1	818850	+		40778	21949	29972	30210	39703	39703					-0.03595734415625884
QIETEIEVPS	10	Unmodified	_QIETEIEVPS_					0	0	0		nc|ENSG00000145734|A6H8Y1-7|BDP1;nc|ENSG00000145734|A6H8Y1-6|BDP1;ENSG00000145734|ENST00000358731|BDP1;nc|ENSG00000145734|A6H8Y1-2|BDP1;ENST00000508917.6_1_5:70751704-70841064:+|nuORF;BDP1|p.P1911Rfs*9|1|0.11|ENSG00000145734|chr5:71524281-71524305|TCCTGAACCTGTTTCTGCTCAGATT/-|frameshift_variant	nc|ENSG00000145734|A6H8Y1-7|BDP1	nc|ENSG00000145734|A6H8Y1-7|BDP1	MULTI-SECPEP	A375_MHC_IP_R1	1	573.55419921875	2	572.790244	1143.56593	-0.32519	-0.00018626	-0.051317	-2.9394E-05	-0.3765	-0.00021566	572.7896457076359	76.57	0.45441	76.57	76.269	76.724	0					11	8	2	0	0	0	0.72086	1	27920	27920		30.637	10.222	1	2260700			40779	5576	29973	30211	39704	39704					-0.00010623038565427123
QIGDFLVKV	9	Unmodified	_QIGDFLVKV_					0	0	0		nc|ENSG00000170445|P12081-2|HARS1;ENSG00000170445|ENST00000504156|HARS1;nc|ENSG00000170445|P12081-3|HARS1;nc|ENSG00000170445|P12081-4|HARS1;ENST00000506579.5_1_5:140057288-140057606:-|nuORF	nc|ENSG00000170445|P12081-2|HARS1	nc|ENSG00000170445|P12081-2|HARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	510.20074462890625	2	509.800217	1017.58588	-0.33779	-0.0001722	0.06473	3.3E-05	-0.27306	-0.0001392	509.8003271286463	97.105	0.75969	97.105	96.73	97.49	0					36	14	4	0	0	0	0.0575	1	35663	35663		76.825	38.649	1	5656200			40780	7505	29974	30212	39705	39705					0.07779217482720924
QIGDFLVKV	9	Unmodified	_QIGDFLVKV_					0	0	0		nc|ENSG00000170445|P12081-2|HARS1;ENSG00000170445|ENST00000504156|HARS1;nc|ENSG00000170445|P12081-3|HARS1;nc|ENSG00000170445|P12081-4|HARS1;ENST00000506579.5_1_5:140057288-140057606:-|nuORF	nc|ENSG00000170445|P12081-2|HARS1	nc|ENSG00000170445|P12081-2|HARS1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	509.800217	1017.58588	-0.76055	-0.00038773	0.31645	0.00016132	-0.44411	-0.00022641	509.8004088158801	96.236	0.70988	96.987	96.703	97.413	0.75044	-0.059075	7.9773E-05	NaN	76.825	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4851400			40781	7505	29974	30212							0.07779217482720924
QIGEKTLDCY	10	Unmodified	_QIGEKTLDCY_					0	0	0			REV__ENST00000468490.1_1_5:50571220-50571544:+|nuORF	REV__ENST00000468490.1_1_5:50571220-50571544:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	584.6983642578125	2	585.278989	1168.54342	-0.2701	-0.00015808	-0.81232	-0.00047543	-1.0824	-0.00063351	585.2787922552914	42.095	1.016	42.095	41.622	42.638	0					43	19	3	0	0	0	0.73104	1	14556	14556		24.991	0	1	3132500	+		40782	25084	29975	30213	39706	39706					-0.034105457078339896
QIGPLTGIKRY	11	Unmodified	_QIGPLTGIKRY_					0	0	0			REV__nc|ENSG00000215421|Q9C0G0-3|ZNF407	REV__nc|ENSG00000215421|Q9C0G0-3|ZNF407	MSMS	A375_MHC_IP_R2	2	623.4613037109375	2	623.36933	1244.72411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.86	1	105.62	105.12	106.12	0.76308								0	0	0	0.16152	1	39666	39666		10.8	2.644	1		+		40783	27495	29976	30214	39707	39707					0.11153340731175376
QIHALDQPV	9	Unmodified	_QIHALDQPV_					0	0	0			REV__ENST00000474975.1_1_2:165578500-165579000:-|nuORF	REV__ENST00000474975.1_1_2:165578500-165579000:-|nuORF	MSMS	A375_MHC_IP_R2	2	510.6759948730469	2	510.777274	1019.53999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.215	1	99.975	99.475	100.47	0.75977								0	0	0	0.14851	1	37637	37637		24.021	3.5669	1		+		40784	16791	29977	30215	39708	39708					0.031005723004795982
QIICCVCGD	9	Unmodified	_QIICCVCGD_					0	0	0		WDR72|p.S538F|1|0.08|ENSG00000166415|chr15:53699902-53699902|G/A|missense_variant;ENSG00000166415|ENST00000360509|WDR72	WDR72|p.S538F|1|0.08|ENSG00000166415|chr15:53699902-53699902|G/A|missense_variant	WDR72|p.S538F|1|0.08|ENSG00000166415|chr15:53699902-53699902|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	477.143798828125	2	477.198099	952.381644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.516	1	82.259	81.759	82.759	0.74293								0	0	0	0.15486	1	30957	30957		7.2892	0.93513	1				40785	7071	29978	30216	39709	39709					-0.0964512926612997
QIIEWRSGLL	10	Unmodified	_QIIEWRSGLL_					0	0	0			REV__ENSG00000156886|ENST00000389202|ITGAD	REV__ENSG00000156886|ENST00000389202|ITGAD	MULTI-SECPEP	A375_MHC_IP_R2	2	608.2479858398438	2	607.84823	1213.68191	-0.3436	-0.00020886	0.023455	1.4257E-05	-0.32015	-0.0001946	607.8481705761002	92.921	0.76227	93.66	93.443	94.205	0.73902					26	14	3	0	0	0	0.70528	1	35332	35332		20.415	2.2682	1	4431800	+		40786	19999	29979	30217	39710	39710					0.0836136532279852
QIIPDQNVVI	10	Unmodified	_QIIPDQNVVI_					0	0	0			REV__SPICE1|p.T152I|1|0.32|ENSG00000163611|chr3:113493243-113493243|G/A|missense_variant	REV__SPICE1|p.T152I|1|0.32|ENSG00000163611|chr3:113493243-113493243|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	380.27716064453125	3	380.220401	1137.63937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.366	1	19.366	18.866	19.866	0								0	0	0	0.15365	1	4750	4750		8.9762	0.82072	1		+		40787	28034	29980	30218	39711	39711					0.07605970194549627
QIIRELQV	8	Unmodified	_QIIRELQV_					0	0	0		ENSG00000126934|ENST00000262948|MAP2K2;ENST00000599345.1_1_19:4101110-4123872:-|nuORF;nc|ENSG00000169032|Q02750-2|MAP2K1;ENSG00000169032|ENST00000307102|MAP2K1;MAP2K1|p.L118V|1|0.46|ENSG00000169032|chr15:66436806-66436806|C/G|missense_variant;ENST00000425818.2_1_15:66679685-66737158:+|nuORF;ENST00000519737.1_1_8:29885475-29885718:+|nuORF	ENSG00000126934|ENST00000262948|MAP2K2;ENST00000425818.2_1_15:66679685-66737158:+|nuORF;ENST00000519737.1_1_8:29885475-29885718:+|nuORF	ENSG00000126934|ENST00000262948|MAP2K2	MULTI-SECPEP	A375_MHC_IP_R1	1	500.2213134765625	2	499.803291	997.59203	-0.64054	-0.00032014	0.047384	2.3683E-05	-0.59316	-0.00029646	499.8033458969271	38.041	0.35648	38.041	37.812	38.168	0					15	6	3	0	0	0	0.55372	1	12816	12816		39.957	0	1	5470300			40788	4071;11793;12984	29981	30219	39712	39712					0.09313735714238192
QIKFYRMRHHY	11	Unmodified	_QIKFYRMRHHY_					0	0	0		ENSG00000134758|ENST00000261593|RNF138	ENSG00000134758|ENST00000261593|RNF138	ENSG00000134758|ENST00000261593|RNF138	MULTI-SECPEP	A375_MHC_IP_R1	1	527.3416137695312	3	526.941867	1577.80377	-0.42438	-0.00022362	0.24255	0.00012781	-0.18183	-9.5815E-05	526.9419735292073	40.737	0.30375	40.737	40.559	40.863	0					8	5	2	0	0	0	1.0014	1	14055	14055		0.08335	0	1	2097000			40789	4604	29982	30220	39713	39713					0.03798084133541124
QIKKKKKKK	9	Unmodified	_QIKKKKKKK_					0	0	0			REV__ENST00000433510.2_1_17:46713761-46713989:-|nuORF	REV__ENST00000433510.2_1_17:46713761-46713989:-|nuORF	MSMS	A375_MHC_IP_R2	2	578.9556884765625	2	578.91625	1155.81795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.09	1	103.85	103.35	104.35	0.76428								0	0	0	0.15486	1	39045	39045		1.8442	0	1		+		40790	24733	29983	30221	39714	39714					0.24627104624119056
QIKLRKVPP	9	Unmodified	_QIKLRKVPP_					0	0	0			REV__ENSG00000162669|ENST00000370425|HFM1	REV__ENSG00000162669|ENST00000370425|HFM1	MSMS	A375_MHC_IP_R2	2	360.2970886230469	3	360.241359	1077.70225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.92	1	29.618	29.118	30.118	0.69872								0	0	0	0.15438	1	10048	10048		14.405	0.79051	1		+		40791	20288	29984	30222	39715	39715					0.16650580773239199
QIKNLEKENY	10	Unmodified	_QIKNLEKENY_					0	0	0		nc|ENSG00000163219|P42331-5|ARHGAP25;nc|ENSG00000163219|P42331-3|ARHGAP25;nc|ENSG00000163219|P42331-6|ARHGAP25;nc|ENSG00000163219|P42331|ARHGAP25;ENSG00000163219|ENST00000409202|ARHGAP25	nc|ENSG00000163219|P42331-5|ARHGAP25	nc|ENSG00000163219|P42331-5|ARHGAP25	MULTI-SECPEP	A375_MHC_IP_R1	1	427.2947692871094	3	426.894465	1277.66157	-0.20016	-8.5449E-05	0.80676	0.0003444	0.6066	0.00025895	426.894680590803	58.581	0.70984	58.581	58.126	58.836	0					17	13	2	0	0	0	0.93041	1	21070	21070		5.0475	0	1	1868500			40792	6639	29985	30223	39716	39716					0.033841498723404584
QIKQDLDQLRF	11	Unmodified	_QIKQDLDQLRF_					0	0	0		ITPR1|p.S1134F|1|0.35|ENSG00000150995|chr3:4683701-4683701|C/T|missense_variant	ITPR1|p.S1134F|1|0.35|ENSG00000150995|chr3:4683701-4683701|C/T|missense_variant	ITPR1|p.S1134F|1|0.35|ENSG00000150995|chr3:4683701-4683701|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	468.6451110839844	3	468.592898	1402.75686	-1.0712	-0.00050194	0.0055886	2.6188E-06	-1.0656	-0.00049933	468.9271231274558	33.541	0.25317	34.293	34.146	34.399	0.75225					8	4	2	0	0	0	0.7353	1	11991	11991		3.8459	0.77364	1	1318600			40793	14183	29986	30224	39717	39717					0.07159503063348893
QIKQDLDQLRF	11	Unmodified	_QIKQDLDQLRF_					0	0	0		ITPR1|p.S1134F|1|0.35|ENSG00000150995|chr3:4683701-4683701|C/T|missense_variant	ITPR1|p.S1134F|1|0.35|ENSG00000150995|chr3:4683701-4683701|C/T|missense_variant	ITPR1|p.S1134F|1|0.35|ENSG00000150995|chr3:4683701-4683701|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	468.592898	1402.75686	-0.37167	-0.00017416	-0.21439	-0.00010046	-0.58605	-0.00027462	468.59307192878777	34.278	0.25128	34.278	34.154	34.405	0	-0.0076069	-0.00022106	NaN	3.8459	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	774590			40794	14183	29986	30224							0.07159503063348893
QIKVHSKLK	9	Unmodified	_QIKVHSKLK_					0	0	0			REV__CYP17A1|p.R239Q|1|0.21|ENSG00000148795|chr10:102834073-102834073|C/T|missense_variant	REV__CYP17A1|p.R239Q|1|0.21|ENSG00000148795|chr10:102834073-102834073|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	361.2454528808594	3	360.901114	1079.68151	0.16453	5.9377E-05	-0.43734	-0.00015784	-0.27281	-9.8459E-05	360.9009928898441	25.111	0.6603	25.111	24.953	25.613	0					21	12	2	0	0	0	0.31062	1	7332	7332		29.841	0	1	12346000	+		40795	15947	29987	30225	39718	39718					0.1448599039358669
QILADDKYQL	10	Unmodified	_QILADDKYQL_					0	0	0			REV__ENSG00000206579|ENST00000327381|XKR4	REV__ENSG00000206579|ENST00000327381|XKR4	MULTI-SECPEP	A375_MHC_IP_R2	2	604.2216796875	2	603.821878	1205.6292	-0.44304	-0.00026752	0.12601	7.6086E-05	-0.31703	-0.00019143	603.8219942156903	103.03	0.5593	103.79	103.38	103.94	0.76428					16	10	2	0	0	0	0.72086	1	39019	39019		24.021	6.9077	1	2516100	+		40796	22600	29988	30226	39719	39719					0.0346136246930655
QILDFETAL	9	Unmodified	_QILDFETAL_					0	0	0		ENST00000526194.5_1_1:21560049-21616919:-|nuORF;nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-2|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	525.2086181640625	2	525.279315	1048.54408	-0.43519	-0.0002286	0.51389	0.00026994	0.078703	4.1341E-05	525.7809539048054	126.13	0.20323	126.42	126.28	126.48	0.2951					5	3	2	0	0	0	0.11436	1	49320	49320		49.933	24.534	1	2298700			40797	3470	29989	30227	39720	39720					0.021746170035157775
QILDGIHYL	9	Unmodified	_QILDGIHYL_					0	0	0		nc|ENSG00000155111|Q9BWU1-2|CDK19;ENSG00000155111|ENST00000368911|CDK19;nc|ENSG00000132964|P49336-2|CDK8;ENSG00000132964|ENST00000381527|CDK8	nc|ENSG00000155111|Q9BWU1-2|CDK19	nc|ENSG00000155111|Q9BWU1-2|CDK19	MULTI-MSMS	A375_MHC_IP_R1	1	536.6364135742188	2	536.295299	1070.57605	-0.84368	-0.00045246	0.25562	0.00013709	-0.58806	-0.00031537	536.2953153232137	94.44	0.56107	94.44	94.191	94.752	0					18	10	2	0	0	0	0.46038	1	34751	34751		21.747	5.8995	1	2017300			40798	6129	29990	30228	39721	39721					0.043580294773164496
QILDGIHYL	9	Unmodified	_QILDGIHYL_					0	0	0		nc|ENSG00000155111|Q9BWU1-2|CDK19;ENSG00000155111|ENST00000368911|CDK19;nc|ENSG00000132964|P49336-2|CDK8;ENSG00000132964|ENST00000381527|CDK8	nc|ENSG00000155111|Q9BWU1-2|CDK19	nc|ENSG00000155111|Q9BWU1-2|CDK19	MULTI-SECPEP	A375_MHC_IP_R2	2	536.636474609375	2	536.295299	1070.57605	-0.71925	-0.00038573	-0.085063	-4.5619E-05	-0.80432	-0.00043135	536.2951984339974	93.671	0.507	94.416	94.109	94.616	0.74474					15	9	2	0	0	0	0.40041	1	35564	35564		16.942	5.302	1	1955600			40799	6129	29990	30228	39722	39722					0.043580294773164496
QILDGVHYL	9	Unmodified	_QILDGVHYL_					0	0	0		ENSG00000167657|ENST00000545797|DAPK3;DAPK3|p.H131R|1|0.04|ENSG00000167657|chr19:3964662-3964662|T/C|missense_variant;nc|ENSG00000167657|O43293-2|DAPK3	ENSG00000167657|ENST00000545797|DAPK3	ENSG00000167657|ENST00000545797|DAPK3	MULTI-SECPEP	A375_MHC_IP_R1	1	529.6868286132812	2	529.287474	1056.5604	-0.66333	-0.00035109	-0.14594	-7.7243E-05	-0.80927	-0.00042834	529.2872953713992	83.876	0.90862	83.876	83.483	84.391	0					31	17	3	0	0	0	0.061132	1	30740	30740		67.344	18.998	1	12851000			40800	7206	29991	30229	39723	39723					0.034377429602727716
QILDGVHYL	9	Unmodified	_QILDGVHYL_					0	0	0		ENSG00000167657|ENST00000545797|DAPK3;DAPK3|p.H131R|1|0.04|ENSG00000167657|chr19:3964662-3964662|T/C|missense_variant;nc|ENSG00000167657|O43293-2|DAPK3	ENSG00000167657|ENST00000545797|DAPK3	ENSG00000167657|ENST00000545797|DAPK3	MULTI-SECPEP	A375_MHC_IP_R2	2	529.6871948242188	2	529.287474	1056.5604	-0.54896	-0.00029056	-0.25964	-0.00013742	-0.8086	-0.00042798	529.2872497114787	83.086	0.70793	83.826	83.444	84.152	0.73962					25	13	3	0	0	0	0.12259	1	31616	31616		53.576	17.531	1	11751000			40801	7206	29991	30229	39724	39724					0.034377429602727716
QILDKSYYL	9	Unmodified	_QILDKSYYL_					0	0	0		nc|ENSG00000096872|Q96LB3-2|IFT74;ENSG00000096872|ENST00000380062|IFT74	nc|ENSG00000096872|Q96LB3-2|IFT74	nc|ENSG00000096872|Q96LB3-2|IFT74	MULTI-MSMS	A375_MHC_IP_R1	1	572.2081298828125	2	571.808239	1141.60193	-0.25701	-0.00014696	-0.78383	-0.0004482	-1.0408	-0.00059516	571.8079166478424	73.231	0.60884	73.231	73.031	73.64	0					24	11	3	0	0	0	0.070818	1	26659	26659		56.177	12.319	1	2409000			40802	2063	29992	30230	39725	39725					0.036788789289630586
QILDKSYYL	9	Unmodified	_QILDKSYYL_					0	0	0		nc|ENSG00000096872|Q96LB3-2|IFT74;ENSG00000096872|ENST00000380062|IFT74	nc|ENSG00000096872|Q96LB3-2|IFT74	nc|ENSG00000096872|Q96LB3-2|IFT74	MULTI-SECPEP	A375_MHC_IP_R2	2	572.2077026367188	2	571.808239	1141.60193	-0.40877	-0.00023374	-0.48808	-0.00027909	-0.89685	-0.00051283	571.8078117804941	72.472	0.50697	73.208	72.973	73.48	0.7354					17	9	3	0	0	0	0.3213	1	27515	27515		37.974	17.52	1	2425500			40803	2063	29992	30230	39726	39726					0.036788789289630586
QILEAIPQV	9	Unmodified	_QILEAIPQV_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;ENST00000559287.5_1_14:24702733-24706289:+|nuORF	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-SECPEP	A375_MHC_IP_R1	1	506.1971130371094	2	505.797675	1009.5808	-0.28813	-0.00014574	-0.33506	-0.00016947	-0.62319	-0.00031521	505.7974996142378	105.18	0.50653	105.18	104.79	105.3	0					23	9	3	0	0	0	0.011451	1	38586	38586		107.19	48.508	1	2019300			40804	2235	29993	30231	39727	39727					0.0763891362009872
QILEAIPQV	9	Unmodified	_QILEAIPQV_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;ENST00000559287.5_1_14:24702733-24706289:+|nuORF	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-SECPEP	A375_MHC_IP_R2	2	506.1970520019531	2	505.797675	1009.5808	-0.66294	-0.00033531	-0.34795	-0.00017599	-1.0109	-0.0005113	505.7975090860242	104.36	0.61034	105.12	104.75	105.36	0.76308					25	11	3	0	0	0	0.14572	1	39461	39461		53.833	19.431	1	3181600			40805	2235	29993	30231	39728	39728					0.0763891362009872
QILEGVHFL	9	Unmodified	_QILEGVHFL_					0	0	0		ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	MULTI-MSMS	A375_MHC_IP_R1	1	528.6978759765625	2	528.297842	1054.58113	-0.50681	-0.00026775	0.037922	2.0034E-05	-0.46889	-0.00024771	528.2977981767044	100.36	0.55748	100.36	100.08	100.63	0					16	10	2	0	0	0	0.066859	1	36927	36927		74.423	23.568	1	2781900			40806	6849	29994	30232	39729	39729					0.05602333339948018
QILEGVHFL	9	Unmodified	_QILEGVHFL_					0	0	0		ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	MULTI-MSMS	A375_MHC_IP_R2	2	528.6974487304688	2	528.297842	1054.58113	-0.30349	-0.00016034	-0.2748	-0.00014518	-0.5783	-0.00030551	528.2975828495555	99.458	0.40895	100.22	99.963	100.37	0.76133					12	7	2	0	0	0	0.29123	1	37743	37743		42.095	18.946	1	2422100			40807	6849	29994	30232	39730	39730					0.05602333339948018
QILEGVHYL	9	Unmodified	_QILEGVHYL_					0	0	0		ENSG00000169967|ENST00000682094|MAP3K2	ENSG00000169967|ENST00000682094|MAP3K2	ENSG00000169967|ENST00000682094|MAP3K2	MULTI-MSMS	A375_MHC_IP_R1	1	536.6947021484375	2	536.295299	1070.57605	-0.59242	-0.00031771	0.69677	0.00037367	0.10435	5.5962E-05	536.2957477180163	78.198	0.5582	78.198	77.998	78.556	0					14	10	2	0	0	0	0.17328	1	28558	28558		39.957	7.6518	1	1805500			40808	7458	29995	30233	39731	39731					0.04358029477339187
QILEGVHYL	9	Unmodified	_QILEGVHYL_					0	0	0		ENSG00000169967|ENST00000682094|MAP3K2	ENSG00000169967|ENST00000682094|MAP3K2	ENSG00000169967|ENST00000682094|MAP3K2	MULTI-MSMS	A375_MHC_IP_R2	2	536.6946411132812	2	536.295299	1070.57605	-0.87096	-0.00046709	0.40349	0.00021639	-0.46747	-0.0002507	536.2953705734167	77.34	0.40804	78.083	77.857	78.265	0.74293					16	7	3	0	0	0	0.13491	1	29361	29361		44.407	13.139	1	2835700			40809	7458	29995	30233	39732	39732					0.04358029477339187
QILKKIIQDRE	11	Unmodified	_QILKKIIQDRE_					0	0	0			REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	MULTI-MSMS	A375_MHC_IP_R2	2	462.3478698730469	3	461.948793	1382.82455	-0.30389	-0.00014038	-0.89076	-0.00041149	-1.1947	-0.00055187	462.2827590408532	141.23	1.0301	141.27	140.75	141.78	0.04216					28	19	2	0	0	0	0.73891	1	55291	55291		0.40827	0	1	871550	+		40810	27175	29996	30234	39733	39733					0.14844952994189953
QILLDLNISYV	11	Unmodified	_QILLDLNISYV_					0	0	0		nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENSG00000139641|ENST00000394048|ESYT1	nc|ENSG00000139641|Q9BSJ8-2|ESYT1	nc|ENSG00000139641|Q9BSJ8-2|ESYT1	MSMS	A375_MHC_IP_R2	2	645.7682495117188	2	645.868828	1289.7231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.48	1	130.69	130.19	131.19	0.2142								0	0	0	0.16191	1	51302	51302		8.7454	3.4485	1				40811	5098	29997	30235	39734	39734					0.08983081571614093
QILQLLIKRG	10	Unmodified	_QILQLLIKRG_					0	0	0		nc|ENSG00000196730|P53355-4|DAPK1;ENSG00000196730|ENST00000408954|DAPK1;nc|ENSG00000196730|P53355-3|DAPK1;ENST00000469067.5_1_9:90113992-90265069:+|nuORF	nc|ENSG00000196730|P53355-4|DAPK1	nc|ENSG00000196730|P53355-4|DAPK1	MULTI-MSMS	A375_MHC_IP_R1	1	394.9955139160156	3	394.595802	1180.76558	0.0023484	9.2668E-07	0.24833	9.7989E-05	0.25067	9.8915E-05	394.59585961441235	23.158	0.65998	23.158	22.873	23.533	0					30	12	3	0	0	0	0.7154	1	6278	6278		5.4027	0	1	9935900			40812	9079	29998	30236	39735	39735					0.18242521490515173
QILQLLIKRG	10	Unmodified	_QILQLLIKRG_					0	0	0		nc|ENSG00000196730|P53355-4|DAPK1;ENSG00000196730|ENST00000408954|DAPK1;nc|ENSG00000196730|P53355-3|DAPK1;ENST00000469067.5_1_9:90113992-90265069:+|nuORF	nc|ENSG00000196730|P53355-4|DAPK1	nc|ENSG00000196730|P53355-4|DAPK1	MULTI-MATCH	A375_MHC_IP_R2	2		3	394.595802	1180.76558	-0.50449	-0.00019907	0.76573	0.00030215	0.26124	0.00010308	394.59577457411217	22.845	0.20419	23.475	23.317	23.521	0.63014	0.15857	0.00053705	NaN	5.4027	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	797470			40813	9079	29998	30236							0.18242521490515173
QILRDENYYQL	11	Unmodified	_QILRDENYYQL_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;ENST00000484393.1_1_1:39751227-39753267:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	A375_MHC_IP_R2	2	485.2102966308594	3	485.580658	1453.72014	-0.54277	-0.00026356	-0.76842	-0.00037313	-1.3112	-0.00063669	486.2476192915589	132.88	1.1198	133.04	132.48	133.6	0.16487					59	21	4	0	0	0	0.73502	1	52336	52336		4.1166	0.52395	1	7346200			40814	4099;14587	29999	30237	39736	39736					0.011432064468181125
QILSAMEY	8	Unmodified	_QILSAMEY_					0	0	0		ABL1|p.S348L|1|0.11|ENSG00000097007|chr9:130872995-130872995|C/T|missense_variant	ABL1|p.S348L|1|0.11|ENSG00000097007|chr9:130872995-130872995|C/T|missense_variant	ABL1|p.S348L|1|0.11|ENSG00000097007|chr9:130872995-130872995|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	477.6561584472656	2	477.733686	953.452819	-0.44265	-0.00021147	0.51434	0.00024572	0.071696	3.4252E-05	477.7338878350625	38.602	0.40917	38.602	38.371	38.78	0					12	7	2	0	0	0	0.70843	1	13091	13091		32.117	5.7757	1	2583700			40815	22	30000	30238	39737	39737					-0.02576969965457465
QILSAMEY	8	Unmodified	_QILSAMEY_					0	0	0		ABL1|p.S348L|1|0.11|ENSG00000097007|chr9:130872995-130872995|C/T|missense_variant	ABL1|p.S348L|1|0.11|ENSG00000097007|chr9:130872995-130872995|C/T|missense_variant	ABL1|p.S348L|1|0.11|ENSG00000097007|chr9:130872995-130872995|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	477.65582275390625	2	477.733686	953.452819	-0.72535	-0.00034653	0.15915	7.6031E-05	-0.5662	-0.0002705	477.73377466455514	37.792	0.56448	38.566	38.279	38.843	0.77451					20	10	3	0	0	0	0.70843	2	13790	13790;13840		32.117	5.7757	1	4750700			40816	22	30000	30238	39738;39739	39738					-0.02576969965457465
QILSTSTTFAK	11	Unmodified	_QILSTSTTFAK_					0	0	0			REV__nc|ENSG00000171469|Q8N587-2|ZNF561	REV__nc|ENSG00000171469|Q8N587-2|ZNF561	MULTI-SECPEP	A375_MHC_IP_R1	1	599.2415771484375	2	598.829703	1195.64485	-0.4124	-0.00024696	-0.39286	-0.00023526	-0.80527	-0.00048222	598.8295529063192	60.767	0.4584	60.767	60.514	60.973	0					14	8	2	0	0	0	0.88931	1	21884	21884		15.739	2.6962	1	1777700	+		40817	21067	30001	30239	39740	39740					0.054856489863595925
QIMKKRRRMRC	11	Unmodified	_QIMKKRRRMRC_					0	0	0			REV__ENST00000246024.6_1_20:7963163-7964443:-|nuORF	REV__ENST00000246024.6_1_20:7963163-7964443:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1568908691406	3	502.619853	1504.83773	-0.66632	-0.0003349	-0.3753	-0.00018863	-1.0416	-0.00052353	502.61955845436603	39.607	0.40663	40.381	40.118	40.524	0.77451					10	7	2	0	0	0	1.0012	1	14540	14540		1.2148	0.51716	1	1199300	+		40818	23111	30002	30240	39741	39741					0.10550466029258132
QIMQCFAEL	9	Unmodified	_QIMQCFAEL_					0	0	0			REV__ENSG00000175699|ENST00000636493|CCDC197	REV__ENSG00000175699|ENST00000636493|CCDC197	MULTI-MSMS	A375_MHC_IP_R1	1	542.2261962890625	2	541.754095	1081.49364	-0.49311	-0.00026714	0.17939	9.7187E-05	-0.31371	-0.00016996	542.2557544753508	88.587	0.25375	88.587	88.51	88.764	0					6	4	2	0	0	0	0.5339	1	32586	32586		18.135	0	1	804260	+		40819	21359	30003	30241	39742	39742					-0.043849519174955276
QINETVLSY	9	Unmodified	_QINETVLSY_					0	0	0			REV__nc|ENSG00000130164|P01130-6|LDLR	REV__nc|ENSG00000130164|P01130-6|LDLR	MULTI-MSMS	A375_MHC_IP_R2	2	534.677001953125	2	533.774396	1065.53424	-1.2056	-0.00064351	1.477	0.00078839	0.27143	0.00014488	533.7746020717883	34.014	1.0654	34.766	34.196	35.262	0.75225					37	20	3	0	0	0	0.65721	1	12327	12327		10.824	0	1	10684000	+		40820	18520	30004	30242	39743	39743					0.004094289981594557
QINWWRTERNL	11	Unmodified	_QINWWRTERNL_					0	0	0		ENST00000215570.7_1_19:2426444-2426798:-|nuORF	ENST00000215570.7_1_19:2426444-2426798:-|nuORF	ENST00000215570.7_1_19:2426444-2426798:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	505.1841125488281	3	505.932025	1514.77424	-0.61871	-0.00031302	-0.92939	-0.00047021	-1.5481	-0.00078323	505.9317825816981	132.5	0.51044	132.5	132.38	132.89	0					13	9	2	0	0	0	0.99916	1	51188	51188		2.4348	0.97967	1	1293200			40821	10084	30005	30243	39744	39744					0.037448433890403976
QIPGFRKFLKK	11	Unmodified	_QIPGFRKFLKK_					0	0	0		CASR|p.E332K|1|0.47|ENSG00000036828|chr3:122262029-122262029|G/A|missense_variant	CASR|p.E332K|1|0.47|ENSG00000036828|chr3:122262029-122262029|G/A|missense_variant	CASR|p.E332K|1|0.47|ENSG00000036828|chr3:122262029-122262029|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	681.6287231445312	2	681.424439	1360.83433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.209	1	96.209	95.709	96.709	0								0	0	0	0.16334	1	35359	35359		1.3295	0.13619	1				40822	296	30006	30244	39745	39745					0.16834185790185074
QIPKQPKQL	9	Unmodified	_QIPKQPKQL_					0	0	0			REV__nc|ENSG00000214198|Q6P2S7-2|TTC41P	REV__nc|ENSG00000214198|Q6P2S7-2|TTC41P	MULTI-MSMS	A375_MHC_IP_R1	1	360.95721435546875	3	360.557236	1078.64988	0.14745	5.3163E-05	-0.050057	-1.8049E-05	0.097388	3.5114E-05	360.5571907113366	43.891	1.0208	43.891	43.502	44.523	0					39	19	3	0	0	0	0.077132	1	15228	15228		49.554	18.851	1	5650500	+		40823	27490	30007	30245	39746	39746					0.11369997639667417
QIPKQPKQL	9	Unmodified	_QIPKQPKQL_					0	0	0			REV__nc|ENSG00000214198|Q6P2S7-2|TTC41P	REV__nc|ENSG00000214198|Q6P2S7-2|TTC41P	MULTI-MSMS	A375_MHC_IP_R2	2	360.9571228027344	3	360.557236	1078.64988	-0.11127	-4.0119E-05	0.043617	1.5726E-05	-0.067653	-2.4393E-05	360.5571752199058	42.896	0.86141	43.668	43.319	44.181	0.7724					39	16	4	0	0	0	0.27715	1	15957	15957		29.841	13.275	1	5666000	+		40824	27490	30007	30245	39747	39747					0.11369997639667417
QIQGYKAEQ	9	Unmodified	_QIQGYKAEQ_					0	0	0			REV__ENST00000557107.1_1_14:37135665-37140295:+|nuORF	REV__ENST00000557107.1_1_14:37135665-37140295:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	533.1993408203125	2	532.772188	1063.52982	-0.87068	-0.00046387	0.75771	0.00040368	-0.11297	-6.019E-05	532.7728946668253	54.798	0.86686	55.549	55.32	56.187	0.75075					19	16	2	0	0	0	0.58271	1	20668	20668		14.838	3.198	1	2185600	+		40825	26118	30008	30246	39748	39748					0.0005996457521177945
QIQPLQSG	8	Unmodified	_QIQPLQSG_					0	0	0			REV__ENSG00000155636|ENST00000286070|RBM45	REV__ENSG00000155636|ENST00000286070|RBM45	MULTI-SECPEP	A375_MHC_IP_R2	2	434.9468078613281	2	435.737617	869.460681	-0.60954	-0.0002656	0.054445	2.3724E-05	-0.5551	-0.00024188	435.73758316544365	34.211	1.0139	34.963	34.702	35.716	0.75225					45	19	3	0	0	0	0.25559	1	12319	12319		48.346	4.4876	1	63831000	+		40826	19931	30009	30247	39749	39749					0.02072925346340071
QIQQIPIPK	9	Unmodified	_QIQQIPIPK_					0	0	0		ENST00000573134.1_1_18:2539001-2552773:-|nuORF;ENSG00000101574|ENST00000574538|METTL4	ENST00000573134.1_1_18:2539001-2552773:-|nuORF	ENST00000573134.1_1_18:2539001-2552773:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	533.2257080078125	2	532.826766	1063.63898	-0.87138	-0.00046429	-1.0183	-0.00054257	-1.8897	-0.0010069	532.8266025829248	54.901	0.40777	55.652	55.422	55.83	0.75075					12	7	2	0	0	0	0.71541	1	20724	20724		11.64	4.3511	1	2347700			40827	2309	30010	30248	39750	39750					0.1097059526537123
QIQSQTFSQ	9	Unmodified	_QIQSQTFSQ_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-3|DNAH1;ENST00000497875.1_1_3:52356446-52387784:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	A375_MHC_IP_R1	1	533.199462890625	2	533.76182	1065.50909	-0.61767	-0.00032969	-0.19813	-0.00010575	-0.81579	-0.00043544	533.761911164725	55.661	0.40876	55.661	55.381	55.79	0					12	7	2	0	0	0	0.62767	1	19898	19898		11.64	0	1	1377800			40828	3248	30011	30249	39751	39751					-0.021046258044407296
QIRFLKKRL	9	Unmodified	_QIRFLKKRL_					0	0	0			REV__ENSG00000165733|ENST00000374518|BMS1	REV__ENSG00000165733|ENST00000374518|BMS1	MSMS	A375_MHC_IP_R1	1	601.396240234375	2	601.398225	1200.7819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.78	1	121.78	121.28	122.28	0								0	0	0	0.15486	1	45253	45253		1.8442	0	1		+		40829	20620	30012	30250	39752	39752					0.18953647447256117
QIRIEYRHFSK	11	Unmodified	_QIRIEYRHFSK_					0	0	0			REV__USH2A|p.P4601S|1|0.56|ENSG00000042781|chr1:215674110-215674110|G/A|missense_variant	REV__USH2A|p.P4601S|1|0.56|ENSG00000042781|chr1:215674110-215674110|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	739.80712890625	2	738.907142	1475.79973	-0.83353	-0.0006159	-0.38061	-0.00028123	-1.2141	-0.00089713	739.4085131879975	77.855	0.46155	78.598	78.416	78.878	0.74293					11	8	2	0	0	0	0.7342	1	29594	29594		4.897	2.1618	1	3134000	+		40830	28963	30013	30251	39753	39753					0.08086317911420338
QIRIVNYRNFI	11	Unmodified	_QIRIVNYRNFI_					0	0	0			REV__ENSG00000173273|ENST00000310430|TNKS	REV__ENSG00000173273|ENST00000310430|TNKS	MULTI-MSMS	A375_MHC_IP_R2	2	479.6842346191406	3	479.277132	1434.80957	-0.52316	-0.00025074	-0.1096	-5.253E-05	-0.63276	-0.00030327	479.2774076984812	131.94	1.1704	132.13	131.49	132.66	0.18953					60	22	4	0	0	0	0.73886	1	51993	51993		0.45452	0	1	18588000	+		40831	21212	30014	30252	39754	39754					0.10955505916831498
QIRPFFSRP	9	Unmodified	_QIRPFFSRP_					0	0	0			REV__ENST00000322428.9_1_8:145159470-145159650:+|nuORF	REV__ENST00000322428.9_1_8:145159470-145159650:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	383.30474853515625	3	383.217214	1146.62981	0.70401	0.00026979	-0.21684	-8.3098E-05	0.48716	0.00018669	383.21706724479316	45.107	1.578	45.107	43.706	45.284	0					47	30	2	0	0	0	0.74412	1	15469	15469		10.151	10.151	1	3092400	+		40832	23582	30015	30253	39755	39755					0.06236246699700132
QIRQHAHEK	9	Unmodified	_QIRQHAHEK_					0	0	0			REV__HTR4|p.Q225_I226insR|1|0.08|ENSG00000164270|chr5:148509857-148509858|-/CTT|inframe_insertion	REV__HTR4|p.Q225_I226insR|1|0.08|ENSG00000164270|chr5:148509857-148509858|-/CTT|inframe_insertion	MULTI-SECPEP	A375_MHC_IP_R1	1	383.26617431640625	3	382.875739	1145.60539	0.16026	6.1358E-05	0.80154	0.00030689	0.9618	0.00036825	382.87653003387874	27.153	1.007	27.153	26.779	27.786	0					27	19	2	0	0	0	0.72623	1	8317	8317		13.615	0	1	1239300	+		40833	26766	30016	30254	39756	39756					0.03840986546174463
QISDDSESHW	10	Unmodified	_QISDDSESHW_					0	0	0		ZKSCAN5|p.K541Nfs*52|1|0.41|ENSG00000196652|chr7:99531347-99531347|A/-|frameshift_variant;ENSG00000196652|ENST00000326775|ZKSCAN5	ZKSCAN5|p.K541Nfs*52|1|0.41|ENSG00000196652|chr7:99531347-99531347|A/-|frameshift_variant	ZKSCAN5|p.K541Nfs*52|1|0.41|ENSG00000196652|chr7:99531347-99531347|A/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	602.2391967773438	2	602.249274	1202.484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.738	1	92.472	91.972	92.972	0.7345								0	0	0	0.15332	1	34891	34891		10.074	2.1638	1				40834	9069	30017	30255	39757	39757					-0.10914725397651637
QISIRGIVGV	10	Unmodified	_QISIRGIVGV_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENST00000530336.2_1_14:51390668-51411121:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-SECPEP	A375_MHC_IP_R1	1	521.1296997070312	2	521.324391	1040.63423	-0.63434	-0.0003307	-0.1634	-8.5185E-05	-0.79774	-0.00041588	521.3241366438073	86.944	0.40369	86.944	86.73	87.134	0					14	7	2	0	0	0	0.63381	1	31883	31883		31.268	0	1	1313200			40835	2187	30018	30256	39758	39758					0.11553711122587629
QISKLKKKQ	9	Unmodified	_QISKLKKKQ_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-SECPEP	A375_MHC_IP_R1	1	551.260009765625	2	550.861141	1099.70773	-0.90008	-0.00049582	-0.57423	-0.00031632	-1.4743	-0.00081214	550.8608037251682	147.32	0.20258	147.32	147.22	147.42	0					40	23	3	0	0	0	0.81779	1	56294	56294		0.52476	0	1	250970			40836	9048	30019	30257	39759	39759					0.1618625956507458
QISKPPLQSG	10	Unmodified	_QISKPPLQSG_					0	0	0		ENSG00000186479|ENST00000334025|RGS7BP	ENSG00000186479|ENST00000334025|RGS7BP	ENSG00000186479|ENST00000334025|RGS7BP	MULTI-SECPEP	A375_MHC_IP_R1	1	528.1979370117188	2	527.798206	1053.58186	-0.8547	-0.00045111	-0.074283	-3.9206E-05	-0.92898	-0.00049031	527.798132947106	30.172	0.65478	30.172	29.949	30.603	0					27	12	3	0	0	0	0.71464	1	9553	9553		21.59	0	1	24064000			40837	8751	30020	30258	39760	39760					0.057211279889770594
QISKPPLQSG	10	Unmodified	_QISKPPLQSG_					0	0	0		ENSG00000186479|ENST00000334025|RGS7BP	ENSG00000186479|ENST00000334025|RGS7BP	ENSG00000186479|ENST00000334025|RGS7BP	MULTI-SECPEP	A375_MHC_IP_R1	1	528.1973266601562	2	527.798206	1053.58186	-0.51042	-0.0002694	-0.50215	-0.00026503	-1.0126	-0.00053443	527.7977777135427	28.719	0.40379	28.719	28.541	28.945	0					12	7	2	0	0	0	0.8528	1	8914	8914		16.149	0	1	3213000			40838	8751	30020	30258	39761	39761					0.057211279889770594
QISRLEQTW	9	Unmodified	_QISRLEQTW_					0	0	0		SH2D3C|p.P760Tfs*5|1|0.4|ENSG00000095370|chr9:127739811-127739812|-/T|frameshift_variant;ENSG00000095370|ENST00000314830|SH2D3C;nc|ENSG00000095370|Q8N5H7-6|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C;nc|ENSG00000095370|Q8N5H7-3|SH2D3C	SH2D3C|p.P760Tfs*5|1|0.4|ENSG00000095370|chr9:127739811-127739812|-/T|frameshift_variant	SH2D3C|p.P760Tfs*5|1|0.4|ENSG00000095370|chr9:127739811-127739812|-/T|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	387.9400634765625	3	387.540134	1159.59857	0.032427	1.2567E-05	-1.114	-0.00043171	-1.0815	-0.00041914	387.5400704304987	27.064	0.50149	27.064	26.728	27.229	0					18	9	3	0	0	0	0.54799	1	8167	8167		17.443	0.87677	1	4789400			40839	2041	30021	30259	39762	39762					0.02515628874948561
QISVSRSFSS	10	Unmodified	_QISVSRSFSS_					0	0	0		MAGEC1|p.P201S|1|0.12|ENSG00000155495|chrX:141906005-141906005|C/T|missense_variant	MAGEC1|p.P201S|1|0.12|ENSG00000155495|chrX:141906005-141906005|C/T|missense_variant	MAGEC1|p.P201S|1|0.12|ENSG00000155495|chrX:141906005-141906005|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	366.4359436035156	3	366.524372	1096.55129	0.22868	8.3818E-05	2.0337	0.0007454	2.2624	0.00082921	366.525018760796	24.959	0.40555	24.959	24.749	25.154	0					21	7	4	0	0	0	0.70925	1	7150	7150		4.7159	0.18705	1	21725000			40840	14338	30022	30260	39763	39763					0.006873496039588645
QITALMSR	8	Unmodified	_QITALMSR_					0	0	0		MUC16|p.M9119I|1|0.29|ENSG00000181143|chr19:8949413-8949413|C/T|missense_variant	MUC16|p.M9119I|1|0.29|ENSG00000181143|chr19:8949413-8949413|C/T|missense_variant	MUC16|p.M9119I|1|0.29|ENSG00000181143|chr19:8949413-8949413|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	460.88861083984375	2	460.25512	918.495686	-0.24811	-0.00011419	-0.9533	-0.00043876	-1.2014	-0.00055296	460.2545446947892	57.767	0.3054	57.767	57.618	57.923	0					7	5	2	0	0	0	0.972	1	20699	20699		1.6526	0	1	703240			40841	14417	30023	30261	39764	39764					0.03317844882644749
QITPKRLEYT	10	Unmodified	_QITPKRLEYT_					0	0	0		nc|ENSG00000133059|Q6XUX3-3|DSTYK;nc|ENSG00000133059|Q6XUX3-2|DSTYK;ENSG00000133059|ENST00000367162|DSTYK	nc|ENSG00000133059|Q6XUX3-3|DSTYK	nc|ENSG00000133059|Q6XUX3-3|DSTYK	MULTI-SECPEP	A375_MHC_IP_R1	1	416.4305725097656	3	416.903072	1247.68739	0.40244	0.00016778	0.6907	0.00028796	1.0931	0.00045573	416.9035155680424	37.362	0.45973	37.362	37.096	37.556	0					12	8	2	0	0	0	0.92445	1	12478	12478		14.218	9.812	1	1557100			40842	4479	30024	30262	39765	39765					0.07345044114595112
QITPPHERLD	10	Unmodified	_QITPPHERLD_					0	0	0			REV__ENST00000475446.5_1_22:20004559-20035575:+|nuORF	REV__ENST00000475446.5_1_22:20004559-20035575:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	401.9591369628906	3	402.547288	1204.62004	-0.37227	-0.00014986	0.72004	0.00028985	0.34776	0.00013999	402.54785668001125	26.338	0.8147	26.998	26.805	27.62	0.65992					28	15	4	0	0	0	0.91932	1	9053	9053		11.518	3.5725	1	2936100	+		40843	25166	30025	30263	39766	39766					0.02591013903656858
QITRIVVLI	9	Unmodified	_QITRIVVLI_					0	0	0			REV__nc|ENSG00000141627|Q7RTS9-2|DYM	REV__nc|ENSG00000141627|Q7RTS9-2|DYM	MULTI-MSMS	A375_MHC_IP_R2	2	352.2742004394531	3	352.237615	1053.69102	-0.54516	-0.00019203	-0.082237	-2.8967E-05	-0.6274	-0.00022099	352.23755086905555	58.382	0.40903	59.131	58.929	59.338	0.74894					12	7	2	0	0	0	0.71784	1	22140	22140		5.4027	0.68679	1	1238300	+		40844	19282	30026	30264	39767	39767					0.16631758679159248
QIWRKRRLWPW	11	Unmodified	_QIWRKRRLWPW_					0	0	0		ENST00000302188.7_1_2:28113810-28113921:-|nuORF	ENST00000302188.7_1_2:28113810-28113921:-|nuORF	ENST00000302188.7_1_2:28113810-28113921:-|nuORF	MSMS	A375_MHC_IP_R1	1	813.0216674804688	2	812.970411	1623.92627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.49	1	94.49	93.99	94.99	0								0	0	0	0.16353	1	34731	34731		0.35063	0.35063	1				40845	10550	30027	30265	39768	39768					0.13926288927245878
QIWWNSFLPFF	11	Unmodified	_QIWWNSFLPFF_					0	0	0			REV__ENST00000486855.1_1_1:114268430-114281397:-|nuORF	REV__ENST00000486855.1_1_1:114268430-114281397:-|nuORF	MSMS	A375_MHC_IP_R2	2	495.65740966796875	3	495.583562	1483.72886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.569	1	65.309	64.809	65.809	0.74022								0	0	0	0.16249	1	24480	24480		4.7159	2.2811	1		+		40846	17973	30028	30266	39769	39769					0.00634224873920175
QIYCINCTLV	10	Unmodified	_QIYCINCTLV_					0	0	0		ENST00000358746.6_1_5:94803588-94805549:-|nuORF	ENST00000358746.6_1_5:94803588-94805549:-|nuORF	ENST00000358746.6_1_5:94803588-94805549:-|nuORF	MSMS	A375_MHC_IP_R2	2	585.2337646484375	2	585.288302	1168.56205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.228	1	96.979	96.479	97.479	0.75045								0	0	0	0.15158	1	36539	36539		14.838	2.5976	1				40847	11000	30029	30267	39770	39770					-0.015487073376561966
QIYDGPIHL	9	Unmodified	_QIYDGPIHL_					0	0	0		ENSG00000135048|ENST00000377044|CEMIP2;nc|ENSG00000135048|Q9UHN6-2|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	528.678955078125	2	528.279649	1054.54475	-0.37996	-0.00020072	0.21504	0.0001136	-0.16492	-8.7122E-05	528.2795956702232	79.041	0.65969	79.041	78.657	79.316	0					31	12	4	0	0	0	0.5212	1	28815	28815		36.044	20.197	1	9704400			40848	4638	30030	30268	39771	39771					0.0196545644323578
QIYDGPIHL	9	Unmodified	_QIYDGPIHL_					0	0	0		ENSG00000135048|ENST00000377044|CEMIP2;nc|ENSG00000135048|Q9UHN6-2|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	528.6790771484375	2	528.279649	1054.54475	-0.49379	-0.00026086	-0.28402	-0.00015004	-0.77781	-0.0004109	528.2793241341972	78.246	0.60921	78.989	78.676	79.285	0.74293					32	11	4	0	0	0	0.070665	1	29686	29686		77.984	77.984	1	8584200			40849	4638	30030	30268	39772	39772					0.0196545644323578
QIYMNWKAVF	10	Unmodified	_QIYMNWKAVF_					0	0	0		ENST00000294383.6_1_1:55643723-55643801:-|nuORF	ENST00000294383.6_1_1:55643723-55643801:-|nuORF	ENST00000294383.6_1_1:55643723-55643801:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	433.09783935546875	3	433.889998	1298.64816	-0.19946	-8.6542E-05	1.3355	0.00057946	1.1361	0.00049292	433.8904080690656	46.015	0.65804	46.78	46.552	47.21	0.76519					16	12	2	0	0	0	0.94163	1	17153	17153		3.5871	0	1	3387600			40850	10488	30031	30269	39773	39773					0.010786205593831255
QIYSVAIFL	9	Unmodified	_QIYSVAIFL_					0	0	0		nc|ENSG00000171509|Q9HBX9-4|RXFP1;ENSG00000171509|ENST00000307765|RXFP1;nc|ENSG00000171509|Q9HBX9-5|RXFP1;nc|ENSG00000171509|Q9HBX9-2|RXFP1;RXFP1|p.G575E|1|0.16|ENSG00000171509|chr4:158647169-158647169|G/A|missense_variant	nc|ENSG00000171509|Q9HBX9-4|RXFP1	nc|ENSG00000171509|Q9HBX9-4|RXFP1	MULTI-SECPEP	A375_MHC_IP_R2	2	528.0907592773438	2	527.302593	1052.59063	-0.23672	-0.00012482	0.40753	0.00021489	0.17081	9.0066E-05	527.8043974144133	99.935	0.76145	100.7	100.17	100.93	0.76278					24	14	2	0	0	0	0.71071	1	37720	37720		14.838	14.838	1	963200			40851	7612	30032	30270	39774	39774					0.06644101625465737
QIYTHLPNK	9	Unmodified	_QIYTHLPNK_					0	0	0			REV__FMNL2|p.P76L|1|0.22|ENSG00000157827|chr2:152542764-152542764|C/T|missense_variant	REV__FMNL2|p.P76L|1|0.22|ENSG00000157827|chr2:152542764-152542764|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	557.2787475585938	2	557.306198	1112.59784	-1.0654	-0.00059377	0.16878	9.4061E-05	-0.89666	-0.00049971	557.306514493492	19.746	0.50564	20.356	20.044	20.549	0.6103					13	9	2	0	0	0	0.65721	1	5978	5978		10.824	1.4408	1	1376600	+		40852	26639	30033	30271	39775	39775					0.04604834225892773
QIYVYIYINLN	11	Unmodified	_QIYVYIYINLN_					0	0	0			REV__ENST00000602285.1_1_5:176562104-176563088:+|nuORF	REV__ENST00000602285.1_1_5:176562104-176563088:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	472.6142272949219	3	472.590494	1414.74965	-0.5465	-0.00025827	-0.87604	-0.00041401	-1.4225	-0.00067228	472.59020735031424	27.547	0.81182	28.225	27.996	28.808	0.67857					31	15	3	0	0	0	0.73658	1	9349	9349		2.6312	2.6312	1	5688000	+		40853	26511	30034	30272	39776	39776					0.058867704629619766
QKAFHHHY	8	Unmodified	_QKAFHHHY_					0	0	0			REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-SECPEP	A375_MHC_IP_R1	1	533.6590576171875	2	534.262125	1066.5097	-0.54332	-0.00029027	-0.95185	-0.00050854	-1.4952	-0.00079881	534.2619779691667	71.126	0.56464	71.126	70.85	71.415	0					20	10	3	0	0	0	0.97144	1	25923	25923		9.3474	0.60203	1	1944800	+		40854	27340	30035	30273	39777	39777					-0.020897415740591896
QKAGLIGL	8	Unmodified	_QKAGLIGL_					0	0	0			REV__tr|U7T6Y8|U7T6Y8_FUSNUBranched-chainaminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00056PE=4SV=1	REV__tr|U7T6Y8|U7T6Y8_FUSNUBranched-chainaminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00056PE=4SV=1	MSMS	A375_MHC_IP_R1	1	400.2959289550781	2	400.255446	798.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.303	1	59.303	58.803	59.803	0								0	0	0	0.16876	1	21329	21329		4.756	0	1		+		40855	28873	30036	30274	39778	39778					0.08903007593983148
QKAGNPVRWAT	11	Unmodified	_QKAGNPVRWAT_					0	0	0			REV__ENSG00000167862|ENST00000301585|MRPL58	REV__ENSG00000167862|ENST00000301585|MRPL58	MULTI-MSMS	A375_MHC_IP_R1	1	614.7327880859375	2	614.333279	1226.652	-0.58234	-0.00035775	-0.033631	-2.0661E-05	-0.61597	-0.00037841	614.3334231060765	32.61	0.30082	32.61	32.434	32.734	0					8	5	2	0	0	0	0.7039	1	10585	10585		15.248	9.5166	1	2203700	+		40856	20798	30037	30275	39779	39779					0.047744263774802675
QKAGNPVRWAT	11	Unmodified	_QKAGNPVRWAT_					0	0	0			REV__ENSG00000167862|ENST00000301585|MRPL58	REV__ENSG00000167862|ENST00000301585|MRPL58	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	614.333279	1226.652	-0.58234	-0.00035775	-0.033631	-2.0661E-05	-0.61597	-0.00037841	614.3334231060765	32.61	0.30082	32.61	32.434	32.734	0	-0.013051	-9.4379E-05	NaN	15.248	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2203700	+		40857	20798	30037	30275							0.047744263774802675
QKAGNPVRWAT	11	Unmodified	_QKAGNPVRWAT_					0	0	0			REV__ENSG00000167862|ENST00000301585|MRPL58	REV__ENSG00000167862|ENST00000301585|MRPL58	MULTI-MATCH	A375_MHC_IP_R2	2		2	614.333279	1226.652	-0.59385	-0.00036482	0.11366	6.9827E-05	-0.48019	-0.000295	614.3333507393655	31.899	0.30213	32.636	32.453	32.755	0.73692	0.013051	8.6596E-05	NaN	15.248	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1627100	+		40858	20798	30037	30275							0.047744263774802675
QKAMEIIQQAF	11	Unmodified	_QKAMEIIQQAF_					0	0	0		ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000474368.1_1_21:42773880-42775423:+|nuORF	ENSG00000183486|ENST00000330714|MX2	ENSG00000183486|ENST00000330714|MX2	MULTI-MSMS	A375_MHC_IP_R2	2	436.1612854003906	3	436.232312	1305.67511	-0.33735	-0.00014716	-3.9521	-0.0017241	-4.2895	-0.0018712	436.22968287818446	30.252	0.25374	30.97	30.86	31.114	0.71857					6	4	2	0	0	0	0.73439	1	10681	10681		4.7159	0.59929	1	1295500			40859	8498	30038	30276	39780	39780					0.03449684379916107
QKATLGKKPL	10	Unmodified	_QKATLGKKPL_					0	0	0			REV__ENSG00000135521|ENST00000367576|LTV1	REV__ENSG00000135521|ENST00000367576|LTV1	MULTI-SECPEP	A375_MHC_IP_R2	2	542.405517578125	2	542.347866	1082.68118	-0.63702	-0.00034549	0.13652	7.4043E-05	-0.5005	-0.00027144	542.3476874580475	147.32	0.31349	147.34	147.26	147.58	0.019913					77	38	3	0	0	0	0.95032	1	57350	57350		1.4819	0	1	320570	+		40860	18860	30039	30277	39781	39781					0.14314570673764138
QKCLYCTLK	9	Unmodified	_QKCLYCTLK_					0	0	0			REV__BRD1|p.G784Afs*109|1|0.19|ENSG00000100425|chr22:49794042-49794042|C/-|frameshift_variant	REV__BRD1|p.G784Afs*109|1|0.19|ENSG00000100425|chr22:49794042-49794042|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	366.64483642578125	3	367.192801	1098.55657	-0.19566	-7.1844E-05	1.0344	0.00037981	0.83869	0.00030796	367.19326644335337	29.428	0.35458	29.428	29.252	29.607	0					8	6	2	0	0	0	0.71541	1	9160	9160		11.495	0	1	10662000	+		40861	15523	30040	30278	39782	39782					0.011236138705498888
QKDLHEEM	8	Unmodified	_QKDLHEEM_					0	0	0		nc|ENSG00000168522|P49354-2|FNTA;ENSG00000168522|ENST00000302279|FNTA;ENST00000524546.5_1_8:42911603-42924800:+|nuORF;ENST00000526755.5_1_8:42911676-42932640:+|nuORF	nc|ENSG00000168522|P49354-2|FNTA	nc|ENSG00000168522|P49354-2|FNTA	MSMS	A375_MHC_IP_R1	1	515.2212524414062	2	515.237124	1028.45969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.95	1	91.95	91.45	92.45	0								0	0	0	0.16876	1	33788	33788		30.225	3.8835	1				40862	7315	30041	30279	39783	39783					-0.05339657084891769
QKDMAIMI	8	Unmodified	_QKDMAIMI_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	MULTI-SECPEP	A375_MHC_IP_R1	1	475.17913818359375	2	475.245906	948.477259	-0.6457	-0.00030687	1.1667	0.00055448	0.52101	0.00024761	475.2459376323072	65.629	0.45824	65.629	65.462	65.921	0					11	8	2	0	0	0	0.92636	1	23737	23737		16.942	0	1	937170			40863	3458	30042	30280	39784	39784					0.0009596691642173028
QKELQSINQKW	11	Unmodified	_QKELQSINQKW_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	A375_MHC_IP_R1	1	468.32098388671875	3	467.921014	1400.74121	-0.13612	-6.3694E-05	-0.033464	-1.5659E-05	-0.16958	-7.9352E-05	467.9210380647132	51.64	0.66085	51.64	51.424	52.085	0					24	12	3	0	0	0	0.97636	1	18345	18345		15.538	6.7867	1	5165400			40864	4099;14587	30043	30281	39785	39785					0.05687216546311902
QKELQSINQKW	11	Unmodified	_QKELQSINQKW_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	A375_MHC_IP_R2	2	468.3205261230469	3	467.921014	1400.74121	-0.71632	-0.00033518	0.26711	0.00012498	-0.44922	-0.0002102	467.9210152908001	50.958	0.45416	51.712	51.462	51.917	0.75406					20	8	3	0	0	0	0.72713	1	19191	19191		11.631	1.8671	1	3789700			40865	4099;14587	30043	30281	39786	39786					0.05687216546311902
QKELQSINQKW	11	Unmodified	_QKELQSINQKW_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	467.921014	1400.74121	-0.71632	-0.00033518	0.26711	0.00012498	-0.44922	-0.0002102	467.9210152908001	50.958	0.45416	51.712	51.462	51.917	0.75406	0.036132	0.0002809	NaN	11.631	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3789700			40866	4099;14587	30043	30281							0.05687216546311902
QKEQEERMSLW	11	Unmodified	_QKEQEERMSLW_					0	0	0		ENSG00000121101|ENST00000349033|TEX14;nc|ENSG00000121101|Q8IWB6-2|TEX14;nc|ENSG00000121101|Q8IWB6|TEX14;TEX14|p.T1009Gfs*8|1|0.04|ENSG00000121101|chr17:58585864-58585865|-/CATTGTTGCC|frameshift_variant	ENSG00000121101|ENST00000349033|TEX14	ENSG00000121101|ENST00000349033|TEX14	MSMS	A375_MHC_IP_R2	2	488.4689636230469	3	488.569764	1462.68746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.108	1	67.845	67.345	68.345	0.73631								0	0	0	0.16247	1	25423	25423		5.8681	1.462	1				40867	3708	30044	30282	39787	39787					-0.025373239476948584
QKETHCPAD	9	Unmodified	_QKETHCPAD_					0	0	0		nc|ENSG00000007402|Q9NY47-4|CACNA2D2;nc|ENSG00000007402|Q9NY47-3|CACNA2D2;nc|ENSG00000007402|Q9NY47-5|CACNA2D2	nc|ENSG00000007402|Q9NY47-4|CACNA2D2	nc|ENSG00000007402|Q9NY47-4|CACNA2D2	MULTI-MSMS	A375_MHC_IP_R2	2	515.1771850585938	2	514.726923	1027.43929	-1.5323	-0.00078873	0.46478	0.00023923	-1.0676	-0.0005495	514.7270185084448	29.37	0.40507	30.069	29.93	30.335	0.69872					13	7	2	0	0	0	0.58047	1	10320	10320		15.847	2.3393	1	2311000			40868	14452	30045	30283	39788	39788					-0.07332827744698989
QKEVMLEGEN	10	Unmodified	_QKEVMLEGEN_					0	0	0			REV__nc|ENSG00000149201|Q6ZN84-3|CCDC81	REV__nc|ENSG00000149201|Q6ZN84-3|CCDC81	MULTI-SECPEP	A375_MHC_IP_R1	1	392.9400329589844	3	392.857023	1175.54924	0.027833	1.0935E-05	0.73	0.00028679	0.75783	0.00029772	392.85729531220653	27.406	0.35428	27.406	27.229	27.584	0					9	6	2	0	0	0	0.77204	1	8339	8339		18.721	4.3158	1	1115900	+		40869	15598	30046	30284	39789	39789					-0.031514471961600066
QKFFRNKYQLI	11	Unmodified	_QKFFRNKYQLI_					0	0	0		ENSG00000204514|ENST00000435989|ZNF814	ENSG00000204514|ENST00000435989|ZNF814	ENSG00000204514|ENST00000435989|ZNF814	MSMS	A375_MHC_IP_R2	2	495.68646240234375	3	495.617266	1483.82997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.17	1	133.34	132.84	133.84	0.16487								0	0	0	0.16334	1	52390	52390		1.3296	0.70282	1				40870	9450	30047	30285	39790	39790					0.10740676576665464
QKFVRFQEL	9	Unmodified	_QKFVRFQEL_					0	0	0		ENST00000520124.5_1_8:22005675-22011752:-|nuORF;nc|ENSG00000168481|Q8N145-2|LGI3;ENSG00000168481|ENST00000306317|LGI3	ENST00000520124.5_1_8:22005675-22011752:-|nuORF	ENST00000520124.5_1_8:22005675-22011752:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	399.30841064453125	3	398.892507	1193.65569	0.022316	8.9018E-06	0.076862	3.066E-05	0.099178	3.9561E-05	398.8925517652271	42.977	0.40395	43.749	43.573	43.977	0.7724					11	7	2	0	0	0	0.74169	1	16012	16012		16.149	9.5187	1	2746800			40871	7307	30048	30286	39791	39791					0.06661096151333368
QKGRWGPEER	10	Unmodified	_QKGRWGPEER_					0	0	0		nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000170298|ENST00000423676|LGALS9B	nc|ENSG00000170298|Q3B8N2-2|LGALS9B	nc|ENSG00000170298|Q3B8N2-2|LGALS9B	MULTI-MSMS	A375_MHC_IP_R1	1	1243.0333251953125	1	1242.63379	1241.62652	-0.36803	-0.00045732	-0.58773	-0.00073034	-0.95576	-0.0011877	1242.633416017705	144.52	0.1273	144.52	144.46	144.59	0					6	3	2	0	0	0	0.72481	1	55441	55441		1.1933	0	1	370080			40872	7491	30049	30287	39792	39792					0.015369518550187422
QKGRWGPEER	10	Unmodified	_QKGRWGPEER_					0	0	0		nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000170298|ENST00000423676|LGALS9B	nc|ENSG00000170298|Q3B8N2-2|LGALS9B	nc|ENSG00000170298|Q3B8N2-2|LGALS9B	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	1242.63379	1241.62652	-0.36803	-0.00045732	-0.58773	-0.00073034	-0.95576	-0.0011877	1242.633416017705	144.52	0.1273	144.52	144.46	144.59	0	-0.02192	0.00020567	NaN	1.1933	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	370080			40873	7491	30049	30287							0.015369518550187422
QKIETFTAQAK	11	Unmodified	_QKIETFTAQAK_					0	0	0			REV__ENSG00000166569|ENST00000299721|CPLX4	REV__ENSG00000166569|ENST00000299721|CPLX4	MULTI-MSMS	A375_MHC_IP_R1	1	422.4649963378906	3	422.23471	1263.6823	-0.16895	-7.1337E-05	-0.09355	-3.95E-05	-0.2625	-0.00011084	422.56901942790324	19.414	0.35488	19.414	19.268	19.623	0					11	6	3	0	0	0	0.73439	1	4716	4716		4.7159	0.30977	1	5401900	+		40874	20685	30050	30288	39793	39793					0.061007402519635434
QKIKELESM	9	Unmodified	_QKIKELESM_					0	0	0			REV__tr|U7T216|U7T216_FUSNUTIGR03545familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00432PE=4SV=1	REV__tr|U7T216|U7T216_FUSNUTIGR03545familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00432PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	369.6135559082031	3	369.202242	1104.5849	0.20717	7.6489E-05	-1.0261	-0.00037883	-0.81891	-0.00030234	369.20166012898267	38.599	0.6623	38.599	38.118	38.78	0					17	10	3	0	0	0	0.4261	1	13179	13179		34.932	7.7088	1	1594700	+		40875	28716	30051	30289	39794	39794					0.0367863505148307
QKINSTWFL	9	Unmodified	_QKINSTWFL_					0	0	0		ENST00000555408.5_1_12:56361645-56362592:+|nuORF	ENST00000555408.5_1_12:56361645-56362592:+|nuORF	ENST00000555408.5_1_12:56361645-56362592:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	568.192626953125	2	568.808574	1135.60259	-0.32456	-0.00018461	-0.11328	-6.4434E-05	-0.43784	-0.00024905	568.8088969502893	73.279	0.45647	73.279	73.031	73.488	0					15	8	2	0	0	0	0.67483	1	26728	26728		14.838	14.838	1	1161500			40876	13431	30052	30290	39795	39795					0.04021718368653637
QKIPRTLNI	9	Unmodified	_QKIPRTLNI_					0	0	0			REV__L1PB1_dup12829|chr21:46585548-46587567:+|1.182533549073013|0.3950341382787979|1.58|465.0|69|3|sense	REV__L1PB1_dup12829|chr21:46585548-46587567:+|1.182533549073013|0.3950341382787979|1.58|465.0|69|3|sense	MULTI-SECPEP	A375_MHC_IP_R1	1	362.29547119140625	3	361.560869	1081.66078	-0.18965	-6.8569E-05	-0.050997	-1.8438E-05	-0.24065	-8.7008E-05	361.56066329893446	30.024	0.25107	30.024	29.848	30.099	0					6	4	2	0	0	0	0.63327	1	9507	9507		17.443	5.9479	1	6272000	+		40877	26904	30053	30291	39796	39796					0.1232140001393418
QKIPRTLNI	9	Unmodified	_QKIPRTLNI_					0	0	0			REV__L1PB1_dup12829|chr21:46585548-46587567:+|1.182533549073013|0.3950341382787979|1.58|465.0|69|3|sense	REV__L1PB1_dup12829|chr21:46585548-46587567:+|1.182533549073013|0.3950341382787979|1.58|465.0|69|3|sense	MULTI-SECPEP	A375_MHC_IP_R2	2	361.9606628417969	3	361.560869	1081.66078	-1.0281	-0.00037171	0.26986	9.7572E-05	-0.75821	-0.00027414	361.89542244919437	29.03	0.70118	29.729	29.634	30.335	0.69872					21	13	2	0	0	0	0.53748	1	10216	10216		22.658	9.7855	1	7883400	+		40878	26904	30053	30291	39797	39797					0.1232140001393418
QKIWLERDRKL	11	Unmodified	_QKIWLERDRKL_					0	0	0		ENSG00000141437|ENST00000269205|SLC25A52;ENSG00000122696|ENST00000242275|SLC25A51	ENSG00000141437|ENST00000269205|SLC25A52	ENSG00000141437|ENST00000269205|SLC25A52	MULTI-MSMS	A375_MHC_IP_R1	1	371.9763488769531	4	371.972859	1483.86233	-0.107	-3.9803E-05	0.23908	8.893E-05	0.13207	4.9128E-05	371.97296970707305	29.53	0.45591	29.53	29.201	29.657	0					14	8	2	0	0	0	0.73658	2	9267	9247;9267		2.6312	0.37851	1	15559000			40879	3801	30054	30292	39798;39799	39799					0.13975463979636515
QKIWLERDRKL	11	Unmodified	_QKIWLERDRKL_					0	0	0		ENSG00000141437|ENST00000269205|SLC25A52;ENSG00000122696|ENST00000242275|SLC25A51	ENSG00000141437|ENST00000269205|SLC25A52	ENSG00000141437|ENST00000269205|SLC25A52	MULTI-SECPEP	A375_MHC_IP_R2	2	371.5807800292969	4	371.972859	1483.86233	-0.18971	-7.0568E-05	0.28222	0.00010498	0.092509	3.4411E-05	371.97304713226936	28.772	0.30005	29.471	29.234	29.534	0.69872					11	5	3	0	0	0	1.0004	1	9937	9937		2.6312	1.7057	1	11997000			40880	3801	30054	30292	39800	39800					0.13975463979636515
QKKHRFYQDRL	11	Unmodified	_QKKHRFYQDRL_					0	0	0		ENST00000395896.8_1_15:62221705-62221765:-|nuORF	ENST00000395896.8_1_15:62221705-62221765:-|nuORF	ENST00000395896.8_1_15:62221705-62221765:-|nuORF	MSMS	A375_MHC_IP_R2	2	759.919677734375	2	759.918041	1517.82153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.18	1	122.55	122.05	123.05	0.3766								0	0	0	0.16307	1	46789	46789		2.7352	0.45242	1				40881	11482	30055	30293	39801	39801					0.08333122660019399
QKKIPPGG	8	Unmodified	_QKKIPPGG_					0	0	0			REV__ENSG00000258315|ENST00000439424|C17orf49	REV__ENSG00000258315|ENST00000439424|C17orf49	MSMS	A375_MHC_IP_R2	2	412.6539306640625	2	412.75307	823.491587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.636	1	54.387	53.887	54.887	0.75105								0	0	0	0.16876	1	20246	20246		8.5933	0.68312	1		+		40882	22896	30056	30294	39802	39802					0.07278123451237661
QKKIVIYSKQP	11	Unmodified	_QKKIVIYSKQP_					0	0	0		ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	MULTI-MSMS	A375_MHC_IP_R2	2	445.00628662109375	3	444.606367	1330.79727	-0.87155	-0.0003875	0.42167	0.00018748	-0.44988	-0.00020002	444.60664859582835	33.886	0.40417	34.638	34.399	34.803	0.75225					18	7	3	0	0	0	0.73698	1	12200	12200		2.2527	0	1	3126700			40883	2076	30057	30295	39803	39803					0.14510469453784935
QKKIVIYSKQP	11	Unmodified	_QKKIVIYSKQP_					0	0	0		ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	MULTI-MATCH	A375_MHC_IP_R1	1		3	444.606367	1330.79727	-0.056806	-2.5256E-05	0.44173	0.0001964	0.38493	0.00017114	444.9408738393135	34.761	0.30418	34.761	34.608	34.912	0	0.061633	2.2964E-05	NaN	2.2527	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3601300			40884	2076	30057	30295							0.14510469453784935
QKKKKKKKKK	10	Unmodified	_QKKKKKKKKK_					0	0	0		AluSz6_dup36815|chr15:60362892-60363058:+|1.3026560341287117|0.0012375329650786|10.04|472.0|7|3|sense;ENSG00000129292|ENST00000395386|PHF20L1	REV__ENSG00000147649|ENST00000336273|MTDH;ENSG00000129292|ENST00000395386|PHF20L1	ENSG00000129292|ENST00000395386|PHF20L1	MSMS	A375_MHC_IP_R2	2	433.9481506347656	3	433.98188	1298.92381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.006	1	41.78	41.28	42.28	0.77451								0	0	0	0.15642	1	15203	15203		0	0	1				40885	4184;19601	30058	30296	39804	39804					0.2863044046957839
QKKKQKKTL	9	Unmodified	_QKKKQKKTL_					0	0	0		ATAD5|p.L1646*|1|0.09|ENSG00000176208|chr17:30893788-30893788|T/-|frameshift_variant;ATAD5|p.C1638Mfs*14|1|0.5|ENSG00000176208|chr17:30893757-30893758|-/A|frameshift_variant;ENSG00000176208|ENST00000321990|ATAD5	ATAD5|p.L1646*|1|0.09|ENSG00000176208|chr17:30893788-30893788|T/-|frameshift_variant	ATAD5|p.L1646*|1|0.09|ENSG00000176208|chr17:30893788-30893788|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	565.7739868164062	2	565.374415	1128.73428	-0.75284	-0.00042564	0.048626	2.7492E-05	-0.70422	-0.00039815	565.3743489590589	149.66	1.3974	149.66	148.61	150	0					143	50	3	0	0	0	0.7724	1	56947	56947		0.52476	0.12405	1	467580			40886	195	30059	30297	39805	39805					0.17505948456414444
QKKQSLQKI	9	Unmodified	_QKKQSLQKI_					0	0	0		ENST00000394780.7_2_X:110963351-110964906:+|nuORF	ENST00000394780.7_2_X:110963351-110964906:+|nuORF	ENST00000394780.7_2_X:110963351-110964906:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	367.9644775390625	3	367.564391	1099.67134	-0.17799	-6.5422E-05	-0.019677	-7.2324E-06	-0.19766	-7.2654E-05	367.89856673008046	22.891	0.40903	23.522	23.265	23.675	0.63014					12	7	2	0	0	0	0.52905	1	7325	7325		18.373	0.50992	1	3168200			40887	11457	30060	30298	39806	39806					0.1254938266836234
QKLACLLCRRQ	11	Unmodified	_QKLACLLCRRQ_					0	0	0		nc|ENSG00000182872|P98175-5|RBM10;nc|ENSG00000182872|P98175-4|RBM10;nc|ENSG00000182872|P98175-3|RBM10;nc|ENSG00000182872|P98175-2|RBM10;ENSG00000182872|ENST00000377604|RBM10	nc|ENSG00000182872|P98175-5|RBM10	nc|ENSG00000182872|P98175-5|RBM10	MULTI-MSMS	A375_MHC_IP_R1	1	444.9842529296875	3	444.584803	1330.73258	-0.29751	-0.00013227	-0.42394	-0.00018848	-0.72145	-0.00032074	444.5844335434835	131.71	2.1787	131.71	131.07	133.25	0					111	42	4	0	0	0	0.73647	1	50702	50702		1.1098	0.096179	1	33109000			40888	14805	30061	30299	39807	39807					0.08044248104511098
QKLARRPVR	9	Unmodified	_QKLARRPVR_					0	0	0			REV__LRRN2|p.E258K|1|0.28|ENSG00000170382|chr1:204619221-204619221|C/T|missense_variant	REV__LRRN2|p.E258K|1|0.28|ENSG00000170382|chr1:204619221-204619221|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	562.7614135742188	2	562.362173	1122.70979	-0.76723	-0.00043146	-0.5977	-0.00033612	-1.3649	-0.00076758	562.36167958491	137.81	0.61401	137.81	137.64	138.25	0					19	11	3	0	0	0	0.81254	1	53038	53038		2.0598	0.40713	1	3333100	+		40889	26962	30062	30300	39808	39808					0.15334733093550312
QKLARRPVR	9	Unmodified	_QKLARRPVR_					0	0	0			REV__LRRN2|p.E258K|1|0.28|ENSG00000170382|chr1:204619221-204619221|C/T|missense_variant	REV__LRRN2|p.E258K|1|0.28|ENSG00000170382|chr1:204619221-204619221|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	562.362173	1122.70979	-0.37446	-0.00021058	-1.1942	-0.00067157	-1.5686	-0.00088215	562.361398280093	137.76	0.45779	137.84	137.71	138.17	0.083969	0.012169	-0.0003357	NaN	2.0598	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2593700	+		40890	26962	30062	30300							0.15334733093550312
QKLERQQQ	8	Unmodified	_QKLERQQQ_					0	0	0			REV__nc|ENSG00000078674|Q15154-4|PCM1	REV__nc|ENSG00000078674|Q15154-4|PCM1	MULTI-MSMS	A375_MHC_IP_R1	1	530.213623046875	2	529.291079	1056.56761	-0.66133	-0.00035004	0.20442	0.0001082	-0.45691	-0.00024184	529.2911021503165	19.597	0.35599	19.597	19.42	19.776	0					15	6	3	0	0	0	0.77488	1	4908	4908		13.508	0	1	6766900	+		40891	16714	30063	30301	39809	39809					0.04158475560689112
QKLHWDRI	8	Unmodified	_QKLHWDRI_					0	0	0			REV__ENST00000468313.5_1_17:39657932-39661743:-|nuORF	REV__ENST00000468313.5_1_17:39657932-39661743:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	366.26715087890625	3	365.873447	1094.59851	0.35234	0.00012891	-0.046726	-1.7096E-05	0.30561	0.00011182	365.8733899016933	35.192	0.55994	35.192	35.013	35.573	0					14	10	2	0	0	0	0.97144	1	11723	11723		10.824	7.2274	1	850270	+	+	40892	15848	30064	30302	39810	39810					0.05499673665599403
QKLLEKSHD	9	Unmodified	_QKLLEKSHD_					0	0	0		nc|ENSG00000141519|Q4G0X9-5|CCDC40;nc|ENSG00000141519|Q4G0X9-4|CCDC40;nc|ENSG00000141519|Q4G0X9-3|CCDC40;ENST00000574799.5_1_17:78022329-78073571:+|nuORF;nc|ENSG00000141519|Q4G0X9-2|CCDC40;ENSG00000141519|ENST00000397545|CCDC40	nc|ENSG00000141519|Q4G0X9-5|CCDC40	nc|ENSG00000141519|Q4G0X9-5|CCDC40	MSMS	A375_MHC_IP_R2	2	366.4444580078125	3	366.536501	1096.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.067	1	40.841	40.341	41.341	0.77451								0	0	0	0.15486	1	14823	14823		6.6304	0	1				40893	5249	30065	30303	39811	39811					0.04324226500671102
QKLLILLHL	9	Unmodified	_QKLLILLHL_					0	0	0			REV__ENST00000334527.11_1_17:8370878-8370950:+|nuORF	REV__ENST00000334527.11_1_17:8370878-8370950:+|nuORF	MSMS	A375_MHC_IP_R1	1	364.28887939453125	3	364.249743	1089.7274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.738	1	29.738	29.238	30.238	0								0	0	0	0.15486	1	9360	9360		11.495	0	1		+		40894	23660	30066	30304	39812	39812					0.1861263557584607
QKLLKIDKL	9	Unmodified	_QKLLKIDKL_					0	0	0			REV__tr|U7T0S8|U7T0S8_FUSNUCitratetransporter-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00632PE=3SV=1	REV__tr|U7T0S8|U7T0S8_FUSNUCitratetransporter-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00632PE=3SV=1	MSMS	A375_MHC_IP_R2	2	366.9791564941406	3	366.91302	1097.71723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.6	1	35.364	34.864	35.864	0.76338								0	0	0	0.15486	1	12496	12496		7.609	0	1		+		40895	28681	30067	30305	39813	39813					0.17228027850592298
QKLLQPAK	8	Unmodified	_QKLLQPAK_					0	0	0		ENST00000523248.1_1_8:17491611-17501178:+|nuORF	ENST00000523248.1_1_8:17491611-17501178:+|nuORF	ENST00000523248.1_1_8:17491611-17501178:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	463.6953125	2	463.295102	924.575651	-0.20137	-9.3294E-05	0.21788	0.00010094	0.016508	7.6483E-06	463.29519865745675	53.446	0.71252	53.446	53.25	53.962	0					23	13	2	0	0	0	0.8957	1	19072	19072		28.487	2.2187	1	7110700			40896	13038	30068	30306	39814	39814					0.11034654548132039
QKLLQPAK	8	Unmodified	_QKLLQPAK_					0	0	0		ENST00000523248.1_1_8:17491611-17501178:+|nuORF	ENST00000523248.1_1_8:17491611-17501178:+|nuORF	ENST00000523248.1_1_8:17491611-17501178:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	463.6949157714844	2	463.295102	924.575651	-0.99237	-0.00045976	0.3978	0.0001843	-0.59458	-0.00027546	463.2952733242077	52.407	0.60696	53.159	53.032	53.639	0.75225					19	11	2	0	0	0	0.50167	1	19793	19793		50.855	10.905	1	9607700			40897	13038	30068	30306	39815	39815					0.11034654548132039
QKLQEELEF	9	Unmodified	_QKLQEELEF_					0	0	0		nc|ENSG00000138162|O95359-1|TACC2;nc|ENSG00000138162|O95359-5|TACC2;ENSG00000138162|ENST00000369005|TACC2	nc|ENSG00000138162|O95359-1|TACC2	nc|ENSG00000138162|O95359-1|TACC2	MSMS	A375_MHC_IP_R2	2	388.6036376953125	3	388.536278	1162.587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.739	1	29.438	28.938	29.938	0.69872								0	0	0	0.15386	1	9968	9968		15.248	2.3759	1				40898	4967	30069	30307	39816	39816					0.012213870609457445
QKLTQIQKL	9	Unmodified	_QKLTQIQKL_					0	0	0			REV__nc|ENSG00000077157|O60237-3|PPP1R12B	REV__nc|ENSG00000077157|O60237-3|PPP1R12B	MULTI-SECPEP	A375_MHC_IP_R1	1	549.7374877929688	2	550.345323	1098.67609	-0.45295	-0.00024928	-0.027059	-1.4892E-05	-0.48001	-0.00026417	550.3453742478648	62.269	2.1475	62.269	61.943	64.09	0					114	41	5	0	0	0	0.05021	1	22475	22475		88.954	13.193	1	189920000	+		40899	27117	30070	30308	39817	39817					0.1307026681113257
QKMKETAV	8	Unmodified	_QKMKETAV_					0	0	0		ENSG00000137106|ENST00000318158|GRHPR;ENST00000460882.5_1_9:37422710-37436776:+|nuORF;ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENST00000482603.1_1_9:37430521-37432552:+|nuORF;ENST00000480596.5_1_9:37429643-37436776:+|nuORF;ENST00000497693.1_1_9:37430482-37431094:+|nuORF;nc|ENSG00000137106|Q9UBQ7-2|GRHPR	ENSG00000137106|ENST00000318158|GRHPR	ENSG00000137106|ENST00000318158|GRHPR	MULTI-MSMS	A375_MHC_IP_R2	2	468.1546630859375	2	467.754953	933.495352	-0.86404	-0.00040416	0.35665	0.00016682	-0.5074	-0.00023734	467.75504610730223	35.256	0.40469	36.02	35.778	36.183	0.76338					12	7	2	0	0	0	0.68964	1	12828	12828		37.974	3.5723	1	2312500			40900	4861	30071	30309	39818	39818					0.025944251627834092
QKQEQKNQLF	10	Unmodified	_QKQEQKNQLF_					0	0	0		nc|ENSG00000122970|Q8WYA0-3|IFT81;ENSG00000122970|ENST00000242591|IFT81	nc|ENSG00000122970|Q8WYA0-3|IFT81	nc|ENSG00000122970|Q8WYA0-3|IFT81	MULTI-MSMS	A375_MHC_IP_R1	1	430.9508972167969	3	430.89821	1289.6728	-0.56381	-0.00024294	0.5148	0.00022183	-0.049007	-2.1117E-05	430.89828769768627	29.176	0.70879	29.176	28.694	29.403	0					41	13	5	0	0	0	0.70651	1	8924	8924		5.4027	1.2861	1	23667000			40901	3819	30072	30310	39819	39819					0.039549719664591976
QKRAAVQRLV	10	Unmodified	_QKRAAVQRLV_					0	0	0		MAN2A2|p.R235Q|2|0.45|ENSG00000196547|chr15:90906013-90906013|G/A|missense_variant	MAN2A2|p.R235Q|2|0.45|ENSG00000196547|chr15:90906013-90906013|G/A|missense_variant	MAN2A2|p.R235Q|2|0.45|ENSG00000196547|chr15:90906013-90906013|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	390.6484680175781	3	390.247285	1167.72002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.756	1	84.756	84.256	85.256	0								0	0	0	0.15588	1	31052	31052		1.7423	0.54893	1				40902	14344	30073	30311	39820	39820					0.14287296028101082
QKRFIKVLLFL	11	Unmodified	_QKRFIKVLLFL_					0	0	0			REV__ENST00000568903.5_1_16:24803023-24807335:+|nuORF	REV__ENST00000568903.5_1_16:24803023-24807335:+|nuORF	MSMS	A375_MHC_IP_R2	2	702.958251953125	2	702.958115	1403.90168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.21	1	145.23	144.73	145.73	0.021408								0	0	0	0.1636	1	56700	56700		0	0	1		+		40903	26265	30074	30312	39821	39821					0.2158821600119154
QKRREFEQ	8	Unmodified	_QKRREFEQ_					0	0	0			REV__ENSG00000133773|ENST00000256151|CCDC59	REV__ENSG00000133773|ENST00000256151|CCDC59	MULTI-SECPEP	A375_MHC_IP_R2	2	374.9325256347656	3	374.200111	1119.5785	-0.095418	-3.5705E-05	0.038774	1.4509E-05	-0.056644	-2.1196E-05	374.2009245088776	25.341	1.1193	25.985	25.568	26.687	0.64368					70	21	5	0	0	0	0.76996	1	8371	8371		29.841	6.0508	1	52712000	+		40904	18732	30075	30313	39822	39822					0.023498779349893084
QKRRRRKHKR	10	Unmodified	_QKRRRRKHKR_					0	0	0			REV__nc|ENSG00000107404|O14640-2|DVL1	REV__nc|ENSG00000107404|O14640-2|DVL1	MULTI-MSMS	A375_MHC_IP_R2	2	363.3866271972656	4	362.986901	1447.9185	-0.23813	-8.6437E-05	-0.54602	-0.0001982	-0.78415	-0.00028464	362.9866423183447	51.196	0.86067	51.948	51.562	52.423	0.75225					51	16	4	0	0	0	0.72607	1	19187	19187		0.62683	0.063655	1	13279000	+		40905	17484	30076	30314	39823	39823					0.21245574450313143
QKRRRRKHKR	10	Unmodified	_QKRRRRKHKR_					0	0	0			REV__nc|ENSG00000107404|O14640-2|DVL1	REV__nc|ENSG00000107404|O14640-2|DVL1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		4	362.986901	1447.9185	0.20822	7.5581E-05	-0.51421	-0.00018665	-0.30599	-0.00011107	362.98663173609555	52.258	0.81385	52.258	51.829	52.643	0	0.15496	2.7881E-05	NaN	0.62683	59	15	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10306000	+		40906	17484	30076	30314							0.21245574450313143
QKRRRRKHKR	10	Unmodified	_QKRRRRKHKR_					0	0	0			REV__nc|ENSG00000107404|O14640-2|DVL1	REV__nc|ENSG00000107404|O14640-2|DVL1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		4	362.986901	1447.9185	-0.23813	-8.6437E-05	-0.54602	-0.0001982	-0.78415	-0.00028464	362.9866423183447	51.196	0.86067	51.948	51.562	52.423	0.75225	-0.15496	-1.8316E-05	NaN	0.62683	51	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13279000	+		40907	17484	30076	30314							0.21245574450313143
QKRRRRKVWLG	11	Unmodified	_QKRRRRKVWLG_					0	0	0		ENST00000507416.1_1_5:60457038-60458278:-|nuORF	ENST00000507416.1_1_5:60457038-60458278:-|nuORF	ENST00000507416.1_1_5:60457038-60458278:-|nuORF	MSMS	A375_MHC_IP_R2	2	741.878662109375	2	741.96566	1481.91677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.55	1	149.57	149.07	150.07	0.01825								0	0	0	0.16353	1	58041	58041		0.35063	0	1				40908	12865	30077	30315	39824	39824					0.19508520641716132
QKRRVYRRKRS	11	Unmodified	_QKRRVYRRKRS_					0	0	0		ENSG00000119403|ENST00000373896|PHF19	ENSG00000119403|ENST00000373896|PHF19	ENSG00000119403|ENST00000373896|PHF19	MULTI-MSMS	A375_MHC_IP_R1	1	512.0501098632812	3	511.650075	1531.92839	-0.7977	-0.00040814	0.28838	0.00014755	-0.50932	-0.00026059	511.6500873295454	138.8	1.4713	138.8	138.61	140.08	0					79	28	5	0	0	0	0.73924	1	53568	53568		0.094841	0	1	12393000			40909	3591	30078	30316	39825	39825					0.1837071766506142
QKRRVYRRKRS	11	Unmodified	_QKRRVYRRKRS_					0	0	0		ENSG00000119403|ENST00000373896|PHF19	ENSG00000119403|ENST00000373896|PHF19	ENSG00000119403|ENST00000373896|PHF19	MULTI-MSMS	A375_MHC_IP_R2	2	512.670654296875	3	511.650075	1531.92839	-0.56211	-0.0002876	0.19072	9.7582E-05	-0.37139	-0.00019002	511.6500539132356	138.76	1.4092	138.82	138.65	140.06	0.059906					64	27	5	0	0	0	0.73924	1	54432	54432		0.094841	0.094841	1	19352000			40910	3591	30078	30316	39826	39826					0.1837071766506142
QKRWHDLLRLM	11	Unmodified	_QKRWHDLLRLM_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MSMS	A375_MHC_IP_R2	2	748.315673828125	2	748.419362	1494.82417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.266	1	62.011	61.511	62.511	0.74503								0	0	0	0.16307	1	23216	23216		2.7352	1.4057	1				40911	3055	30079	30317	39827	39827					0.09655254793324275
QKSDNNGP	8	Unmodified	_QKSDNNGP_					0	0	0			REV__nc|ENSG00000137166|Q8IVH2-3|FOXP4	REV__nc|ENSG00000137166|Q8IVH2-3|FOXP4	MULTI-MSMS	A375_MHC_IP_R2	2	430.59832763671875	2	430.198856	858.383159	-0.79929	-0.00034385	0.093934	4.041E-05	-0.70535	-0.00030344	430.19886586310037	36.817	0.60919	37.588	37.359	37.968	0.7709					27	11	4	0	0	0	0.77702	2	13439	13439;13473		5.7604	0	1	6915300	+		40912	18990	30080	30318	39828;39829	39828					-0.05169712589849951
QKSTRITLL	9	Unmodified	_QKSTRITLL_					0	0	0			REV__ENST00000376234.7_3_13:101316529-101320909:-|nuORF	REV__ENST00000376234.7_3_13:101316529-101320909:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	354.288818359375	3	353.888874	1058.64479	-0.016532	-5.8503E-06	-0.18696	-6.6164E-05	-0.2035	-7.2015E-05	353.8887809077276	33.573	0.40587	33.573	33.342	33.748	0					18	7	3	0	0	0	0.70411	1	10972	10972		6.6304	0.43853	1	5736800	+		40913	24139	30081	30319	39830	39830					0.11781693777038527
QKSVISWLL	9	Unmodified	_QKSVISWLL_					0	0	0		ENSG00000128829|ENST00000263791|EIF2AK4;nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	ENSG00000128829|ENST00000263791|EIF2AK4	ENSG00000128829|ENST00000263791|EIF2AK4	MULTI-MSMS	A375_MHC_IP_R1	1	358.6134338378906	3	358.54997	1072.62808	0.098286	3.5241E-05	-0.75716	-0.00027148	-0.65887	-0.00023624	358.54961807634686	53.428	0.91401	53.428	53.099	54.013	0					42	17	3	0	0	0	0.51106	1	19014	19014		18.373	0	1	10358000			40914	4165	30082	30320	39831	39831					0.09467192891088416
QKTPSEAL	8	Unmodified	_QKTPSEAL_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MSMS	A375_MHC_IP_R1	1	437.29058837890625	2	437.23745	872.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.07	1	44.07	43.57	44.57	0								0	0	0	0.16876	1	15358	15358		10.824	0	1				40915	3968	30083	30321	39832	39832					0.019015056264720442
QKTTLLFQK	9	Unmodified	_QKTTLLFQK_					0	0	0		ENSG00000162924|ENST00000394479|REL;nc|ENSG00000162924|Q04864|REL	ENSG00000162924|ENST00000394479|REL	ENSG00000162924|ENST00000394479|REL	MULTI-MSMS	A375_MHC_IP_R1	1	369.95721435546875	3	369.557125	1105.64954	0.34083	0.00012596	0.11554	4.2697E-05	0.45637	0.00016865	369.55711590570866	53.556	0.56043	53.556	53.352	53.912	0					17	10	2	0	0	0	0.6324	1	19098	19098		8.9762	3.1928	1	2977800			40916	6614	30084	30322	39833	39833					0.10094577919812764
QKTTLLFQK	9	Unmodified	_QKTTLLFQK_					0	0	0		ENSG00000162924|ENST00000394479|REL;nc|ENSG00000162924|Q04864|REL	ENSG00000162924|ENST00000394479|REL	ENSG00000162924|ENST00000394479|REL	MULTI-MSMS	A375_MHC_IP_R2	2	369.9569396972656	3	369.557125	1105.64954	-0.032837	-1.2135E-05	0.10743	3.9702E-05	0.074593	2.7566E-05	369.55715016498243	52.03	1.3709	52.783	52.169	53.54	0.75225					61	26	4	0	0	0	0.14922	1	19803	19803		32.037	9.2625	1	25195000			40917	6614	30084	30322	39834	39834					0.10094577919812764
QKTTQLKKF	9	Unmodified	_QKTTQLKKF_					0	0	0		nc|ENSG00000131725|Q5JSH3-4|WDR44;nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44	nc|ENSG00000131725|Q5JSH3-4|WDR44	nc|ENSG00000131725|Q5JSH3-4|WDR44	MULTI-MSMS	A375_MHC_IP_R2	2	374.9325256347656	3	374.560758	1120.66044	-0.063982	-2.3965E-05	-1.3981	-0.00052367	-1.4621	-0.00054764	374.56056923054405	24.796	0.6097	25.439	25.263	25.873	0.64368					19	11	2	0	0	0	0.59266	1	8371	8371		15.248	8.625	1	11783000			40918	4345	30085	30323	39835	39835					0.10493980294063476
QKTVEWVG	8	Unmodified	_QKTVEWVG_					0	0	0		ENSG00000203857|ENST00000369413|HSD3B1;HSD3B1|p.S359F|1|0.43|ENSG00000203857|chr1:119514599-119514599|C/T|missense_variant;ENSG00000203859|ENST00000369416|HSD3B2	ENSG00000203857|ENST00000369413|HSD3B1;ENSG00000203859|ENST00000369416|HSD3B2	ENSG00000203859|ENST00000369416|HSD3B2	MSMS	A375_MHC_IP_R1	1	473.65936279296875	2	473.753267	945.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.982	1	50.982	50.482	51.482	0								0	0	0	0.16876	1	18083	18083		12.532	0	1				40919	9397;9398	30086	30324	39836	39836					0.01705498380431436
QKVFQLIELT	10	Unmodified	_QKVFQLIELT_					0	0	0		ADAM2|p.G210E|1|0.32|ENSG00000104755|chr8:39788682-39788682|C/T|missense_variant	ADAM2|p.G210E|1|0.32|ENSG00000104755|chr8:39788682-39788682|C/T|missense_variant	ADAM2|p.G210E|1|0.32|ENSG00000104755|chr8:39788682-39788682|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	406.93304443359375	3	406.907934	1217.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.054	1	73.789	73.289	74.289	0.73541								0	0	0	0.15547	1	27730	27730		3.0723	0	1				40920	45	30087	30325	39837	39837					0.1018311626276045
QKVIDAQNGG	10	Unmodified	_QKVIDAQNGG_					0	0	0			REV__tr|U7SPX1|U7SPX1_FUSNUNucleoid-associatedproteinHMPREF1766_01675OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01675PE=3SV=1	REV__tr|U7SPX1|U7SPX1_FUSNUNucleoid-associatedproteinHMPREF1766_01675OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01675PE=3SV=1	MSMS	A375_MHC_IP_R1	1	515.2025146484375	2	515.269813	1028.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.016	1	90.016	89.516	90.516	0								0	0	0	0.15265	1	33078	33078		12.241	0.60036	1		+		40921	28370	30088	30326	39838	39838					0.011950804324669662
QKVPLLKFGS	10	Unmodified	_QKVPLLKFGS_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MSMS	A375_MHC_IP_R1	1	372.9292907714844	3	372.89737	1115.67028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.616	1	23.616	23.116	24.116	0								0	0	0	0.14983	1	6519	6519		11.518	3.9089	1		+		40922	18428	30089	30327	39839	39839					0.1170716829947196
QKWAYRKTVQK	11	Unmodified	_QKWAYRKTVQK_					0	0	0			REV__TRIT1|p.R323W|1|0.11|ENSG00000043514|chr1:39847259-39847259|G/A|missense_variant	REV__TRIT1|p.R323W|1|0.11|ENSG00000043514|chr1:39847259-39847259|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	480.0110778808594	3	479.277132	1434.80957	-0.67822	-0.00032506	-0.080135	-3.8407E-05	-0.75836	-0.00036346	479.27727935356455	132.09	1.0605	132.09	131.53	132.59	0					59	20	4	0	0	0	0.73795	1	51042	51042		1.3296	0.11481	1	17082000	+		40923	28909	30090	30328	39840	39840					0.10955505916808761
QKWKWWEEERY	11	Unmodified	_QKWKWWEEERY_					0	0	0		ENSG00000198900|ENST00000361337|TOP1;TOP1|p.K239Vfs*4|1|0.12|ENSG00000198900|chr20:41092572-41092573|AA/-|frameshift_variant	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MSMS	A375_MHC_IP_R2	2	556.6560668945312	3	556.603685	1666.78923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.662	1	59.411	58.911	59.911	0.74894								0	0	0	0.16358	1	22195	22195		0.094841	0	1				40924	9362	30091	30329	39841	39841					-0.017497095336239
QKWTRHYC	8	Unmodified	_QKWTRHYC_					0	0	0		ENST00000567980.5_1_16:81819579-81955027:+|nuORF;ENSG00000197943|ENST00000564138|PLCG2	ENST00000567980.5_1_16:81819579-81955027:+|nuORF	ENST00000567980.5_1_16:81819579-81955027:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	374.9156799316406	3	374.515154	1120.52363	0.063472	2.3771E-05	2.0003	0.00074915	2.0638	0.00077292	374.5157594789314	19.17	0.60769	19.773	19.633	20.241	0.60308					18	11	2	0	0	0	0.972	1	5884	5884		13.906	9.3772	1	4333000			40925	9209	30092	30330	39842	39842					-0.03180832137263678
QKYLSSTF	8	Unmodified	_QKYLSSTF_					0	0	0			REV__ENSG00000122375|ENST00000241891|OPN4	REV__ENSG00000122375|ENST00000241891|OPN4	MULTI-MSMS	A375_MHC_IP_R1	1	487.1355895996094	2	487.2531	972.491647	-0.3525	-0.00017176	-3.0498	-0.001486	-3.4023	-0.0016578	487.2498356683047	76.811	0.25698	76.811	76.673	76.93	0					6	4	2	0	0	0	0.77123	1	27960	27960		14.582	0	1	662650	+		40926	18199	30093	30331	39843	39843					0.004300786605654139
QKYLWWKRYLT	11	Unmodified	_QKYLWWKRYLT_					0	0	0		ENSG00000118402|ENST00000369816|ELOVL4	ENSG00000118402|ENST00000369816|ELOVL4	ENSG00000118402|ENST00000369816|ELOVL4	MULTI-SECPEP	A375_MHC_IP_R1	1	528.394775390625	3	528.961033	1583.86127	-0.8176	-0.00043248	1.1754	0.00062176	0.35783	0.00018928	529.2961620509889	134.35	0.70892	134.35	134.17	134.88	0					18	13	2	0	0	0	1.0011	1	51883	51883		1.3296	0.82369	1	10616000			40927	3539	30094	30332	39844	39844					0.09269249610724728
QLADIISYL	9	Unmodified	_QLADIISYL_					0	0	0		nc|ENSG00000185278|Q5TC79-3|ZBTB37;nc|ENSG00000185278|Q5TC79-2|ZBTB37;ENSG00000185278|ENST00000367701|ZBTB37	nc|ENSG00000185278|Q5TC79-3|ZBTB37	nc|ENSG00000185278|Q5TC79-3|ZBTB37	MSMS	A375_MHC_IP_R1	1	518.68896484375	2	518.289682	1034.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.65	1	131.65	131.15	132.15	0								0	0	0	0.15486	1	50756	50756		10.074	0	1				40928	8656	30095	30333	39845	39845					0.04891207383184337
QLAEALIKV	9	Unmodified	_QLAEALIKV_					0	0	0		ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	MULTI-SECPEP	A375_MHC_IP_R2	2	492.1819152832031	2	492.808042	983.601532	-0.5027	-0.00024774	0.07738	3.8133E-05	-0.42532	-0.0002096	492.808042658844	76.506	0.66129	77.247	76.994	77.655	0.74052					24	12	3	0	0	0	0.013591	1	29056	29056		106.94	63.082	1	4126500			40929	2932	30096	30334	39846	39846					0.10907503999760593
QLAERFFQY	9	Unmodified	_QLAERFFQY_					0	0	0			REV__nc|ENSG00000110583|Q86UY6-3|NAA40	REV__nc|ENSG00000110583|Q86UY6-3|NAA40	MULTI-MSMS	A375_MHC_IP_R1	1	601.7031860351562	2	601.303655	1200.59276	-0.28083	-0.00016886	0.81319	0.00048897	0.53236	0.00032011	601.3041645861989	51.175	0.65963	51.175	50.915	51.575	0					23	12	3	0	0	0	0.67152	1	18243	18243		9.3831	0.63772	1	2583600	+		40930	17632	30097	30335	39847	39847					0.0004853036330132454
QLAERFFQY	9	Unmodified	_QLAERFFQY_					0	0	0			REV__nc|ENSG00000110583|Q86UY6-3|NAA40	REV__nc|ENSG00000110583|Q86UY6-3|NAA40	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	601.303655	1200.59276	-0.28083	-0.00016886	0.81319	0.00048897	0.53236	0.00032011	601.3041645861989	51.175	0.65963	51.175	50.915	51.575	0	-0.0044744	0.0004756	NaN	9.3831	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2583600	+		40931	17632	30097	30335							0.0004853036330132454
QLAERFFQY	9	Unmodified	_QLAERFFQY_					0	0	0			REV__nc|ENSG00000110583|Q86UY6-3|NAA40	REV__nc|ENSG00000110583|Q86UY6-3|NAA40	MULTI-MATCH	A375_MHC_IP_R2	2		2	601.303655	1200.59276	-0.65403	-0.00039327	0.19152	0.00011516	-0.4625	-0.0002781	601.3035989984776	50.43	0.45705	51.184	50.904	51.361	0.75406	0.0044744	-0.00027202	NaN	9.3831	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2171900	+		40932	17632	30097	30335							0.0004853036330132454
QLAESVANV	9	Unmodified	_QLAESVANV_					0	0	0		nc|ENSG00000151491|Q12929-2|EPS8;ENSG00000151491|ENST00000281172|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	MULTI-SECPEP	A375_MHC_IP_R2	2	466.14801025390625	2	465.748182	929.481811	-0.91237	-0.00042494	0.11625	5.4142E-05	-0.79613	-0.00037079	465.7481869883924	54.307	0.45504	55.058	54.814	55.269	0.75075					12	8	2	0	0	0	0.016309	1	20502	20502		114.65	25.695	1	2720700			40933	5911	30098	30336	39848	39848					0.014248906551983964
QLAGQPQEL	9	Unmodified	_QLAGQPQEL_					0	0	0			REV__nc|ENSG00000133316|Q6RFH5-2|WDR74	REV__nc|ENSG00000133316|Q6RFH5-2|WDR74	MULTI-MSMS	A375_MHC_IP_R2	2	492.1819152832031	2	492.261456	982.50836	-0.5107	-0.0002514	3.0187	0.001486	2.508	0.0012346	492.2636043457172	76.448	0.50806	77.189	76.943	77.451	0.74052					17	9	2	0	0	0	0.098973	1	29056	29056		50.855	10.898	1	1376200	+		40934	18717	30099	30337	39849	39849					0.016405795465175288
QLAGQPQEL	9	Unmodified	_QLAGQPQEL_					0	0	0			REV__nc|ENSG00000133316|Q6RFH5-2|WDR74	REV__nc|ENSG00000133316|Q6RFH5-2|WDR74	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	492.261456	982.50836	-0.5107	-0.0002514	3.0187	0.001486	2.508	0.0012346	492.2636043457172	76.448	0.50806	77.189	76.943	77.451	0.74052	-0.14079	0.00031648	NaN	50.855	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1376200	+		40935	18717	30099	30337							0.016405795465175288
QLAKEKQEY	9	Unmodified	_QLAKEKQEY_					0	0	0		ENST00000556123.1_1_14:69968394-69968652:+|nuORF;ENSG00000175985|ENST00000322564|PLEKHD1	ENST00000556123.1_1_14:69968394-69968652:+|nuORF	ENST00000556123.1_1_14:69968394-69968652:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	569.2005004882812	2	568.800946	1135.58734	-0.63809	-0.00036295	-0.24353	-0.00013852	-0.88162	-0.00050147	568.8007605978921	57.702	0.75941	58.451	58.12	58.879	0.74895					38	14	4	0	0	0	0.2487	1	21809	21809		34.402	1.616	1	10550000			40936	7992	30100	30338	39850	39850					0.024968067808231353
QLAKKKKTL	9	Unmodified	_QLAKKKKTL_					0	0	0			REV__MYH7|p.E995K|1|0.09|ENSG00000092054|chr14:23423663-23423663|C/T|missense_variant	REV__MYH7|p.E995K|1|0.09|ENSG00000092054|chr14:23423663-23423663|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	1058.2938232421875	1	1057.70919	1056.70191	0.028001	2.9617E-05	0.6103	0.00064552	0.6383	0.00067513	1058.711657332019	119.62	0.3033	119.62	119.54	119.84	0					7	5	2	0	0	0	0.81254	1	44242	44242		2.0598	0	1	20948000	+		40937	27058	30101	30339	39851	39851					0.1758316105342601
QLAKKVLIKK	10	Unmodified	_QLAKKVLIKK_					0	0	0		CYP17A1|p.E84K|1|0.18|ENSG00000148795|chr10:102837112-102837112|C/T|missense_variant	CYP17A1|p.E84K|1|0.18|ENSG00000148795|chr10:102837112-102837112|C/T|missense_variant	CYP17A1|p.E84K|1|0.18|ENSG00000148795|chr10:102837112-102837112|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	585.31005859375	2	584.910633	1167.80671	-0.60607	-0.0003545	-0.045058	-2.6355E-05	-0.65112	-0.00038085	584.9105424108773	142.01	0.15314	142.01	141.93	142.08	0					4	2	2	0	0	0	0.95034	1	54518	54518		0.40072	0	1	2425500			40938	695	30102	30340	39852	39852					0.22952282529968215
QLAKNRKKI	9	Unmodified	_QLAKNRKKI_					0	0	0			REV__nc|ENSG00000188916|Q6ZSG2-2|INSYN2A	REV__nc|ENSG00000188916|Q6ZSG2-2|INSYN2A	MULTI-SECPEP	A375_MHC_IP_R2	2	367.3167419433594	3	366.90838	1097.70331	-0.1342	-4.9241E-05	0.50706	0.00018604	0.37285	0.0001368	366.90840855978934	18.905	0.13086	19.508	19.452	19.583	0.60308					4	2	2	0	0	0	0.7911	1	5685	5685		7.609	3.4194	1	3382600	+		40939	22125	30103	30341	39853	39853					0.15836795142172377
QLANDQLYLY	10	Unmodified	_QLANDQLYLY_					0	0	0			REV__ENSG00000040608|ENST00000043402|RTN4R	REV__ENSG00000040608|ENST00000043402|RTN4R	MULTI-MSMS	A375_MHC_IP_R1	1	414.6115417480469	3	414.211794	1239.61355	-0.014187	-5.8766E-06	-0.042582	-1.7638E-05	-0.056769	-2.3514E-05	414.211754812707	30.149	0.5541	30.149	29.949	30.503	0					19	10	3	0	0	0	0.57453	1	9541	9541		22.775	0.66608	1	6478600	+		40940	16339	30104	30342	39854	39854					0.0033307595226688136
QLAPAFHEV	9	Unmodified	_QLAPAFHEV_					0	0	0		ENST00000338592.5_1_7:65617312-65617492:+|nuORF	ENST00000338592.5_1_7:65617312-65617492:+|nuORF	ENST00000338592.5_1_7:65617312-65617492:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	505.67205810546875	2	506.266542	1010.51853	-0.36003	-0.00018227	0.15442	7.8178E-05	-0.20561	-0.00010409	506.2667481283604	55.476	0.5086	55.476	55.075	55.584	0					16	9	3	0	0	0	0.53748	1	19849	19849		24.021	13.197	1	1042500			40941	10837	30105	30343	39855	39855					0.01369187271757255
QLAPAFHEV	9	Unmodified	_QLAPAFHEV_					0	0	0		ENST00000338592.5_1_7:65617312-65617492:+|nuORF	ENST00000338592.5_1_7:65617312-65617492:+|nuORF	ENST00000338592.5_1_7:65617312-65617492:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	506.6667175292969	2	506.266542	1010.51853	-0.9431	-0.00047746	1.0662	0.0005398	0.12313	6.2336E-05	506.26724643773343	54.594	0.86288	55.345	54.66	55.523	0.75075					27	16	3	0	0	0	0.064406	1	20632	20632		58.679	26.373	1	3093500			40942	10837	30105	30343	39856	39856					0.01369187271757255
QLAPASAIDIG	11	Unmodified	_QLAPASAIDIG_					0	0	0			REV__nc|ENSG00000105662|Q6UUV9-3|CRTC1	REV__nc|ENSG00000105662|Q6UUV9-3|CRTC1	MULTI-MSMS	A375_MHC_IP_R1	1	529.2076416015625	2	528.290214	1054.56587	-0.59109	-0.00031227	-0.93247	-0.00049261	-1.5236	-0.00080488	528.2901492523561	81.201	0.71066	81.201	80.846	81.556	0					32	13	3	0	0	0	0.59391	1	29608	29608		23.79	1.0535	1	8358600	+		40943	17402	30106	30344	39857	39857					0.040774217520947786
QLAPAVPGL	9	Unmodified	_QLAPAVPGL_					0	0	0		ENSG00000130479|ENST00000324096|MAP1S;nc|ENSG00000130479|Q66K74-2|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	MULTI-MSMS	A375_MHC_IP_R1	1	865.914306640625	1	865.51418	864.506903	-0.21209	-0.00018357	-0.37791	-0.00032709	-0.59	-0.00051066	865.513907928301	96.804	0.45619	96.804	96.58	97.036	0					11	8	2	0	0	0	0.098973	1	35617	35617		50.855	18.738	1	1243100			40944	4246	30107	30345	39858	39858					0.06922990248415317
QLAPAVPGL	9	Unmodified	_QLAPAVPGL_					0	0	0		ENSG00000130479|ENST00000324096|MAP1S;nc|ENSG00000130479|Q66K74-2|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	MULTI-MSMS	A375_MHC_IP_R2	2	865.9144897460938	1	865.51418	864.506903	-0.5516	-0.00047742	0.41887	0.00036254	-0.13273	-0.00011488	865.5142902039753	95.908	0.457	96.658	96.551	97.008	0.75045					10	8	2	0	0	0	0.13491	1	36514	36514		44.407	12.29	1	1522500			40945	4246	30107	30345	39859	39859					0.06922990248415317
QLAPAVPGL	9	Unmodified	_QLAPAVPGL_					0	0	0		ENSG00000130479|ENST00000324096|MAP1S;nc|ENSG00000130479|Q66K74-2|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	MULTI-SECPEP	A375_MHC_IP_R2	2	433.6608581542969	2	433.260728	864.506903	-0.20632	-8.9392E-05	0.66788	0.00028937	0.46155	0.00019997	433.26097836755866	96.006	0.55905	96.756	96.5	97.059	0.75045					14	10	2	0	0	0	0.65246	1	36475	36475		10.824	1.4765	1	1549900			40946	4246	30107	30345	39860	39860					0.06922990248415317
QLAPAVPGL	9	Unmodified	_QLAPAVPGL_					0	0	0		ENSG00000130479|ENST00000324096|MAP1S;nc|ENSG00000130479|Q66K74-2|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	MULTI-MATCH	A375_MHC_IP_R1	1		2	433.260728	864.506903	-0.076711	-3.3236E-05	0.10822	4.6886E-05	0.031505	1.365E-05	433.2609668193877	96.825	0.50667	96.825	96.58	97.086	0	0.034465	-0.00038309	NaN	21.747	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1056600			40947	4246	30107	30345							0.06922990248415317
QLAPFEVRL	9	Unmodified	_QLAPFEVRL_					0	0	0		ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	MULTI-SECPEP	A375_MHC_IP_R1	1	537.2113037109375	2	536.811116	1071.60768	-0.61771	-0.00033159	0.26675	0.00014319	-0.35096	-0.0001884	536.8112169252618	97.399	0.45349	97.399	97.187	97.641	0					13	8	2	0	0	0	0.36673	1	35812	35812		26.021	10.772	1	1619300			40948	8639	30108	30346	39861	39861					0.07474022231281197
QLAPFEVRL	9	Unmodified	_QLAPFEVRL_					0	0	0		ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	MULTI-SECPEP	A375_MHC_IP_R2	2	537.2106323242188	2	536.811116	1071.60768	-0.94744	-0.0005086	0.85431	0.0004586	-0.093136	-4.9997E-05	536.8114351629678	96.472	0.45576	97.228	97.013	97.469	0.75586					12	8	2	0	0	0	0.36673	1	36658	36658		26.021	10.772	1	1442700			40949	8639	30108	30346	39862	39862					0.07474022231281197
QLAPVFQRV	9	Unmodified	_QLAPVFQRV_					0	0	0		ENSG00000213380|ENST00000306875|COG8;COG8|p.R364W|1|0.54|ENSG00000213380|chr16:69334844-69334844|G/A|missense_variant	ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	MULTI-SECPEP	A375_MHC_IP_R1	1	529.6871337890625	2	529.311284	1056.60801	-0.83219	-0.00044049	0.27077	0.00014332	-0.56142	-0.00029717	529.3114011875197	67.065	0.35835	67.065	66.836	67.194	0					11	6	2	0	0	0	0.46045	1	24305	24305		36.127	36.127	1	1621800			40950	9564	30109	30347	39863	39863					0.08197441951142537
QLAQETEQL	9	Unmodified	_QLAQETEQL_					0	0	0			REV__nc|ENSG00000176155|Q2TAC2-2|CCDC57	REV__nc|ENSG00000176155|Q2TAC2-2|CCDC57	MULTI-MSMS	A375_MHC_IP_R2	2	530.6874389648438	2	530.269478	1058.5244	-0.50968	-0.00027027	-0.27478	-0.00014571	-0.78446	-0.00041598	530.2693423621587	43.045	0.40395	43.818	43.573	43.977	0.7724					13	7	2	0	0	0	0.38603	1	16000	16000		25.399	2.663	1	1386600	+		40951	21389	30110	30348	39864	39864					-0.0025175900723297673
QLAQFVHEV	9	Unmodified	_QLAQFVHEV_					0	0	0		nc|ENSG00000214826|Q92771|DDX12P;ENST00000543026.5_1_12:31240692-31242187:+|nuORF;ENST00000542244.5_1_12:31237807-31242486:+|nuORF;ENST00000542242.1_1_12:31240692-31242486:+|nuORF;ENST00000535158.5_1_12:31227017-31242187:+|nuORF;ENST00000536265.5_1_12:31227017-31242486:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8;nc|ENSG00000013573|Q96FC9|DDX11	nc|ENSG00000214826|Q92771|DDX12P	nc|ENSG00000214826|Q92771|DDX12P	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1846923828125	2	535.785099	1069.55564	-0.70933	-0.00038005	0.44832	0.0002402	-0.26101	-0.00013984	535.7852684074236	64.015	1.1163	64.015	63.684	64.8	0					51	21	4	0	0	0	0.011107	1	23099	23099		122.18	63.5	1	31004000			40952	14898	30111	30349	39865	39865					0.023648588175319674
QLAQFVHEV	9	Unmodified	_QLAQFVHEV_					0	0	0		nc|ENSG00000214826|Q92771|DDX12P;ENST00000543026.5_1_12:31240692-31242187:+|nuORF;ENST00000542244.5_1_12:31237807-31242486:+|nuORF;ENST00000542242.1_1_12:31240692-31242486:+|nuORF;ENST00000535158.5_1_12:31227017-31242187:+|nuORF;ENST00000536265.5_1_12:31227017-31242486:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8;nc|ENSG00000013573|Q96FC9|DDX11	nc|ENSG00000214826|Q92771|DDX12P	nc|ENSG00000214826|Q92771|DDX12P	MULTI-SECPEP	A375_MHC_IP_R2	2	536.1847534179688	2	535.785099	1069.55564	-0.80179	-0.00042959	0.17904	9.593E-05	-0.62275	-0.00033366	535.7851153855793	63.071	1.1666	63.813	63.484	64.651	0.74263					57	22	4	0	0	0	0.0066573	1	23874	23874		139.14	64.209	1	34072000			40953	14898	30111	30349	39866	39866					0.023648588175319674
QLASKGVGS	9	Unmodified	_QLASKGVGS_					0	0	0		nc|ENSG00000101199|Q8N6T3-5|ARFGAP1;nc|ENSG00000101199|Q8N6T3-2|ARFGAP1	nc|ENSG00000101199|Q8N6T3-5|ARFGAP1	nc|ENSG00000101199|Q8N6T3-5|ARFGAP1	MULTI-MSMS	A375_MHC_IP_R1	1	424.27886962890625	2	423.737617	845.460681	-0.20764	-8.7985E-05	-1.7934	-0.00075992	-2.001	-0.00084791	423.73750453972815	39.983	0.45934	39.983	39.845	40.304	0					10	8	2	0	0	0	0.68705	1	13760	13760		8.1555	0.8663	1	768950			40954	14511	30112	30350	39867	39867					0.03176925346349435
QLATGDEFY	9	Unmodified	_QLATGDEFY_					0	0	0		LHX4|p.V334Wfs*15|1|0.44|ENSG00000121454|chr1:180274405-180274405|G/-|frameshift_variant;ENSG00000121454|ENST00000263726|LHX4;ENSG00000107187|ENST00000371748|LHX3;nc|ENSG00000107187|Q9UBR4-2|LHX3	LHX4|p.V334Wfs*15|1|0.44|ENSG00000121454|chr1:180274405-180274405|G/-|frameshift_variant	LHX4|p.V334Wfs*15|1|0.44|ENSG00000121454|chr1:180274405-180274405|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	522.1975708007812	2	522.237647	1042.46074	-0.65248	-0.00034075	0.73014	0.0003813	0.077651	4.0552E-05	522.2380067162696	40.366	0.45641	41.141	40.828	41.285	0.77451					10	8	2	0	0	0	0.64808	1	14942	14942		11.64	1.4569	1	1255700			40955	2732	30113	30351	39868	39868					-0.05879119444330172
QLCKARMLL	9	Unmodified	_QLCKARMLL_					0	0	0		ENST00000580048.1_1_18:72264475-72264550:-|nuORF	ENST00000580048.1_1_18:72264475-72264550:-|nuORF	ENST00000580048.1_1_18:72264475-72264550:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	538.7083129882812	2	538.309372	1074.60419	-0.86114	-0.00046356	-0.54661	-0.00029424	-1.4077	-0.0007578	538.3090290761752	126.97	0.70799	127.23	126.9	127.61	0.26593					19	13	2	0	0	0	0.60012	1	49708	49708		12.532	12.532	1	13587000			40956	13668	30114	30352	39869	39869					0.06987312861406281
QLCLFYVKS	9	Unmodified	_QLCLFYVKS_					0	0	0			REV__ENST00000226951.10_1_4:10491877-10492063:-|nuORF	REV__ENST00000226951.10_1_4:10491877-10492063:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	368.29296875	3	367.531811	1099.5736	0.16611	6.1052E-05	1.6195	0.0005952	1.7856	0.00065625	367.86553214361834	24.622	0.35325	24.622	24.447	24.801	0					9	6	2	0	0	0	0.73363	1	7047	7047		4.1895	0.86986	1	1220000	+		40957	23063	30115	30353	39870	39870					0.027798577480098174
QLDDLKVEL	9	Unmodified	_QLDDLKVEL_					0	0	0		ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENST00000446039.2_1_7:27309195-27309288:-|nuORF;ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF	ENSG00000136942|ENST00000348462|RPL35	ENSG00000136942|ENST00000348462|RPL35	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1971435546875	2	536.797872	1071.58119	-0.8408	-0.00045134	0.1048	5.6256E-05	-0.736	-0.00039509	536.7979318922011	84.048	1.0131	84.048	83.583	84.596	0					52	19	4	0	0	0	0.011066	1	30700	30700		125.53	25.774	1	39475000			40958	4848	30116	30354	39871	39871					0.0482628854927043
QLDDYNAKL	9	Unmodified	_QLDDYNAKL_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4;ENST00000521187.1_1_6:112493743-112499389:-|nuORF	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-MSMS	A375_MHC_IP_R1	1	540.671875	2	540.272021	1078.52949	-0.091938	-4.9672E-05	1.635	0.00088336	1.5431	0.00083369	540.2717743693698	44.98	0.80954	44.98	44.575	45.384	0					47	15	5	0	0	0	0.035419	1	15695	15695		70.332	24.632	1	19623000			40959	3109	30117	30355	39872	39872					-0.006634551446268233
QLDDYNAKL	9	Unmodified	_QLDDYNAKL_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4;ENST00000521187.1_1_6:112493743-112499389:-|nuORF	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-SECPEP	A375_MHC_IP_R2	2	540.9120483398438	2	540.272021	1078.52949	-0.75299	-0.00040682	2.4659	0.0013322	1.7129	0.00092541	540.2719678747316	44.232	0.75946	45.001	44.58	45.34	0.76909					44	14	5	0	0	0	0.074405	1	16530	16530		70.332	16.499	1	15918000			40960	3109	30117	30355	39873	39873					-0.006634551446268233
QLDEARGLLL	10	Unmodified	_QLDEARGLLL_					0	0	0		ENSG00000103549|ENST00000324685|RNF40;nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;ENST00000566703.1_1_16:30776326-30777900:+|nuORF	ENSG00000103549|ENST00000324685|RNF40	ENSG00000103549|ENST00000324685|RNF40	MULTI-SECPEP	A375_MHC_IP_R2	2	564.7084350585938	2	564.324588	1126.63462	-0.47962	-0.00027066	0.38273	0.00021599	-0.096883	-5.4674E-05	564.3244637548429	83.062	0.55449	83.802	83.444	83.998	0.73962					17	10	2	0	0	0	0.90513	1	31623	31623		17.113	2.2746	1	2696300			40961	2462	30118	30356	39874	39874					0.07637086051818187
QLDEITNFY	9	Unmodified	_QLDEITNFY_					0	0	0			REV__ENSG00000204889|ENST00000377755|KRT40	REV__ENSG00000204889|ENST00000377755|KRT40	MULTI-SECPEP	A375_MHC_IP_R1	1	572.1719970703125	2	571.771854	1141.52915	-0.11692	-6.6854E-05	0.33982	0.0001943	0.2229	0.00012745	571.7718814928922	106.07	0.56233	106.07	105.76	106.32	0					20	10	3	0	0	0	0.28216	1	38950	38950		41.84	1.8899	1	2203900	+	+	40962	15891	30119	30357	39875	39875					-0.03594874864461417
QLDENTIGY	9	Unmodified	_QLDENTIGY_					0	0	0		ENST00000481451.1_1_10:124172402-124177583:+|nuORF;nc|ENSG00000107679|Q9HB21-2|PLEKHA1;ENSG00000107679|ENST00000368990|PLEKHA1	ENST00000481451.1_1_10:124172402-124177583:+|nuORF	ENST00000481451.1_1_10:124172402-124177583:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	527.1480712890625	2	526.748379	1051.4822	-0.49007	-0.00025814	0.4095	0.0002157	-0.080566	-4.2438E-05	526.7483978727532	60.281	0.71287	60.281	59.905	60.618	0					26	13	3	0	0	0	0.44024	1	21692	21692		22.736	3.4793	1	2617900			40963	2750	30120	30358	39876	39876					-0.0414773441559646
QLDENTIGY	9	Unmodified	_QLDENTIGY_					0	0	0		ENST00000481451.1_1_10:124172402-124177583:+|nuORF;nc|ENSG00000107679|Q9HB21-2|PLEKHA1;ENSG00000107679|ENST00000368990|PLEKHA1	ENST00000481451.1_1_10:124172402-124177583:+|nuORF	ENST00000481451.1_1_10:124172402-124177583:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	527.14794921875	2	526.748379	1051.4822	-0.83399	-0.0004393	-0.02146	-1.1304E-05	-0.85545	-0.0004506	526.7482585835463	59.666	0.70572	60.413	60.098	60.804	0.74714					24	13	3	0	0	0	0.12771	1	22585	22585		45.7	11.298	1	2458100			40964	2750	30120	30358	39877	39877					-0.0414773441559646
QLDERRLYY	9	Unmodified	_QLDERRLYY_					0	0	0		nc|ENSG00000185359|O14964-2|HGS;ENSG00000185359|ENST00000329138|HGS	nc|ENSG00000185359|O14964-2|HGS	nc|ENSG00000185359|O14964-2|HGS	MULTI-MSMS	A375_MHC_IP_R1	1	628.724853515625	2	628.325119	1254.63569	-0.69954	-0.00043954	0.36188	0.00022738	-0.33767	-0.00021216	628.3253167353671	40.1	0.50974	40.1	39.896	40.406	0					27	9	4	0	0	0	0.0085451	1	13728	13728		140.63	110	1	21242000			40965	8662	30121	30359	39878	39878					0.018553004207433332
QLDERRLYY	9	Unmodified	_QLDERRLYY_					0	0	0		nc|ENSG00000185359|O14964-2|HGS;ENSG00000185359|ENST00000329138|HGS	nc|ENSG00000185359|O14964-2|HGS	nc|ENSG00000185359|O14964-2|HGS	MULTI-MSMS	A375_MHC_IP_R2	2	419.61846923828125	3	419.219172	1254.63569	-0.16035	-6.7222E-05	-0.21822	-9.1484E-05	-0.37857	-0.00015871	419.2190450004677	39.419	1.8815	40.193	39.708	41.59	0.77451					70	36	5	0	0	0	0.0099638	1	14479	14479		121.35	75.324	1	128040000			40966	8662	30121	30359	39879	39879					0.018553004207433332
QLDERRLYY	9	Unmodified	_QLDERRLYY_					0	0	0		nc|ENSG00000185359|O14964-2|HGS;ENSG00000185359|ENST00000329138|HGS	nc|ENSG00000185359|O14964-2|HGS	nc|ENSG00000185359|O14964-2|HGS	MULTI-MSMS	A375_MHC_IP_R2	2	628.7244262695312	2	628.325119	1254.63569	-0.90726	-0.00057005	0.24846	0.00015612	-0.65879	-0.00041394	628.3252090778387	39.383	0.55903	40.158	39.812	40.371	0.77451					31	10	4	0	0	0	0.0093155	1	14502	14502		114.2	83.565	1	18930000			40967	8662	30121	30359	39880	39880					0.018553004207433332
QLDETNALL	9	Unmodified	_QLDETNALL_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	MULTI-SECPEP	A375_MHC_IP_R1	1	509.0613098144531	2	508.766571	1015.51859	-0.24431	-0.0001243	-0.20592	-0.00010476	-0.45022	-0.00022906	508.76640846831606	82.359	0.81131	82.359	81.961	82.772	0					25	15	2	0	0	0	0.28216	1	30161	30161		49.933	17.628	1	4074600			40968	4566	30122	30360	39881	39881					0.011451424810957178
QLDETNALL	9	Unmodified	_QLDETNALL_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	MULTI-MSMS	A375_MHC_IP_R2	2	509.0345458984375	2	508.766571	1015.51859	-0.82128	-0.00041784	-0.06133	-3.1203E-05	-0.88261	-0.00044904	508.7666103811951	81.568	0.75618	82.311	81.928	82.684	0.74293					36	14	4	0	0	0	0.10411	1	31054	31054		49.933	5.526	1	4191200			40969	4566	30122	30360	39882	39882					0.011451424810957178
QLDETNALL	9	Unmodified	_QLDETNALL_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	508.766571	1015.51859	-0.82128	-0.00041784	-0.06133	-3.1203E-05	-0.88261	-0.00044904	508.7666103811951	81.568	0.75618	82.311	81.928	82.684	0.74293	-0.024095	5.6914E-05	NaN	49.933	36	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4191200			40970	4566	30122	30360							0.011451424810957178
QLDFERLN	8	Unmodified	_QLDFERLN_					0	0	0			REV__ENSG00000058085|ENST00000264144|LAMC2	REV__ENSG00000058085|ENST00000264144|LAMC2	MULTI-MSMS	A375_MHC_IP_R2	2	517.6928100585938	2	517.766906	1033.51926	-0.81832	-0.0004237	0.16787	8.6918E-05	-0.65044	-0.00033678	517.766889662545	62.462	0.60844	63.205	62.925	63.534	0.74263					31	11	4	0	0	0	0.74945	1	23617	23617		20.454	1.0917	1	7531700	+		40971	16430	30123	30361	39883	39883					0.003839819208224071
QLDFRLPLQFD	11	Unmodified	_QLDFRLPLQFD_					0	0	0			REV__nc|ENSG00000143374|Q9BW92-2|TARS2	REV__nc|ENSG00000143374|Q9BW92-2|TARS2	MULTI-MSMS	A375_MHC_IP_R2	2	696.7683715820312	2	696.369527	1390.7245	-0.68169	-0.00047471	-0.50533	-0.0003519	-1.187	-0.00082661	696.3688526036972	131.27	1.069	131.46	130.88	131.95	0.18953					36	20	2	0	0	0	0.73078	1	51656	51656		8.1555	2.8586	1	3089600	+		40972	19350	30124	30362	39884	39884					0.044767156603711555
QLDHVNVYY	9	Unmodified	_QLDHVNVYY_					0	0	0		ENSG00000173166|ENST00000319170|RAPH1;nc|ENSG00000173166|Q70E73-5|RAPH1;nc|ENSG00000173166|Q70E73-6|RAPH1;nc|ENSG00000173166|Q70E73-9|RAPH1;nc|ENSG00000173166|Q70E73-3|RAPH1;nc|ENSG00000173166|Q70E73-4|RAPH1;nc|ENSG00000173166|Q70E73-7|RAPH1;nc|ENSG00000173166|Q70E73-8|RAPH1;nc|ENSG00000173166|Q70E73-2|RAPH1	ENSG00000173166|ENST00000319170|RAPH1	ENSG00000173166|ENST00000319170|RAPH1	MULTI-MSMS	A375_MHC_IP_R1	1	576.1800537109375	2	575.780013	1149.54547	-0.061491	-3.5405E-05	-0.12797	-7.3681E-05	-0.18946	-0.00010909	575.7800521336842	56.452	0.5575	56.452	56.041	56.599	0					20	10	3	0	0	0	0.033557	1	20226	20226		71.922	25.901	1	4393100			40973	7773	30125	30363	39885	39885					-0.023317489077271603
QLDHVNVYY	9	Unmodified	_QLDHVNVYY_					0	0	0		ENSG00000173166|ENST00000319170|RAPH1;nc|ENSG00000173166|Q70E73-5|RAPH1;nc|ENSG00000173166|Q70E73-6|RAPH1;nc|ENSG00000173166|Q70E73-9|RAPH1;nc|ENSG00000173166|Q70E73-3|RAPH1;nc|ENSG00000173166|Q70E73-4|RAPH1;nc|ENSG00000173166|Q70E73-7|RAPH1;nc|ENSG00000173166|Q70E73-8|RAPH1;nc|ENSG00000173166|Q70E73-2|RAPH1	ENSG00000173166|ENST00000319170|RAPH1	ENSG00000173166|ENST00000319170|RAPH1	MULTI-SECPEP	A375_MHC_IP_R2	2	576.1795043945312	2	575.780013	1149.54547	-0.28592	-0.00016463	-0.5386	-0.00031012	-0.82452	-0.00047474	575.7798427347575	55.749	0.50726	56.5	56.186	56.693	0.75014					22	9	4	0	0	0	0.32966	1	21077	21077		53.833	13.875	1	5261300			40974	7773	30125	30363	39886	39886					-0.023317489077271603
QLDKNSEVY	9	Unmodified	_QLDKNSEVY_					0	0	0		ENSG00000171262|ENST00000397609|FAM98B;ENST00000305752.4_1_15:38756353-38762648:+|nuORF;nc|ENSG00000171262|Q52LJ0-1|FAM98B	ENSG00000171262|ENST00000397609|FAM98B	ENSG00000171262|ENST00000397609|FAM98B	MULTI-MSMS	A375_MHC_IP_R1	1	548.6690673828125	2	548.269478	1094.5244	-0.75669	-0.00041487	1.542	0.00084541	0.78526	0.00043053	548.2694974049094	26.95	0.60355	26.95	26.677	27.28	0					29	11	4	0	0	0	0.029064	1	8130	8130		75.761	33.666	1	10233000			40975	7589	30126	30364	39887	39887					-0.019077590072356543
QLDKNSEVY	9	Unmodified	_QLDKNSEVY_					0	0	0		ENSG00000171262|ENST00000397609|FAM98B;ENST00000305752.4_1_15:38756353-38762648:+|nuORF;nc|ENSG00000171262|Q52LJ0-1|FAM98B	ENSG00000171262|ENST00000397609|FAM98B	ENSG00000171262|ENST00000397609|FAM98B	MULTI-MSMS	A375_MHC_IP_R2	2	548.6691284179688	2	548.269478	1094.5244	-1.1712	-0.00064213	0.28061	0.00015385	-0.89058	-0.00048828	548.2695374027381	26.44	0.50675	27.1	26.907	27.414	0.65992					16	9	2	0	0	0	0.054426	2	8935	8935;9023		62.573	20.733	1	7139400			40976	7589	30126	30364	39888;39889	39888					-0.019077590072356543
QLDLAQRTLY	10	Unmodified	_QLDLAQRTLY_					0	0	0		ENSG00000204524|ENST00000414468|ZNF805;ENSG00000083844|ENST00000263095|ZNF264;ENST00000596597.5_1_19:58757693-58758161:+|nuORF;ENST00000595560.1_1_19:58067392-58071050:-|nuORF;nc|ENSG00000251369|Q7Z398-2|ZNF550;ENSG00000251369|ENST00000699333|ZNF550;ENSG00000198131|ENST00000687789|ZNF544	ENSG00000204524|ENST00000414468|ZNF805	ENSG00000204524|ENST00000414468|ZNF805	MULTI-SECPEP	A375_MHC_IP_R1	1	611.235107421875	2	610.83532	1219.65609	0.18806	0.00011487	-0.33958	-0.00020743	-0.15152	-9.2555E-05	610.8350565266396	69.401	0.66086	69.401	69.121	69.782	0					29	12	3	0	0	0	0.018452	1	25167	25167		135.86	90.164	1	12998000			40977	9452	30127	30365	39890	39890					0.055044710805532304
QLDLAQRTLY	10	Unmodified	_QLDLAQRTLY_					0	0	0		ENSG00000204524|ENST00000414468|ZNF805;ENSG00000083844|ENST00000263095|ZNF264;ENST00000596597.5_1_19:58757693-58758161:+|nuORF;ENST00000595560.1_1_19:58067392-58071050:-|nuORF;nc|ENSG00000251369|Q7Z398-2|ZNF550;ENSG00000251369|ENST00000699333|ZNF550;ENSG00000198131|ENST00000687789|ZNF544	ENSG00000204524|ENST00000414468|ZNF805	ENSG00000204524|ENST00000414468|ZNF805	MULTI-MATCH	A375_MHC_IP_R2	2		2	610.83532	1219.65609	-0.38942	-0.00023787	-0.038537	-2.354E-05	-0.42795	-0.00026141	610.8353327698377	68.717	0.60698	69.452	69.121	69.728	0.73511	0.025419	0.00018678	NaN	190.03	35	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12974000			40978	9452	30127	30365							0.055044710805532304
QLDPAIPGV	9	Unmodified	_QLDPAIPGV_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-MSMS	A375_MHC_IP_R1	1	455.6553649902344	2	455.255643	908.496732	-0.43813	-0.00019946	0.32578	0.00014831	-0.11235	-5.1148E-05	455.2556721507694	90.477	0.65964	90.477	90.083	90.742	0					29	12	3	0	0	0	0.077132	1	33267	33267		54.774	20.671	1	1557000			40979	2650	30128	30366	39891	39891					0.03882382523192973
QLDPAIPGV	9	Unmodified	_QLDPAIPGV_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-MSMS	A375_MHC_IP_R2	2	455.6549072265625	2	455.255643	908.496732	-0.12263	-5.5828E-05	-0.061378	-2.7943E-05	-0.18401	-8.3771E-05	455.2552881459434	89.721	0.61524	90.452	90.135	90.751	0.7318					24	11	3	0	0	0	0.050162	1	34163	34163		64.236	22.142	1	1414100			40980	2650	30128	30366	39892	39892					0.03882382523192973
QLDPAIPGVY	10	Unmodified	_QLDPAIPGVY_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-SECPEP	A375_MHC_IP_R2	2	536.5647583007812	2	536.787307	1071.56006	-0.63093	-0.00033867	0.31617	0.00016972	-0.31475	-0.00016896	536.7872293424965	99.585	0.40652	100.35	100.12	100.52	0.76278					11	7	2	0	0	0	0.91328	1	37748	37748		17.443	14.161	1	1123800			40981	2650	30129	30367	39893	39893					0.02714323240434169
QLDPALNRL	9	Unmodified	_QLDPALNRL_					0	0	0		ENSG00000114742|ENST00000302313|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48	ENSG00000114742|ENST00000302313|WDR48	ENSG00000114742|ENST00000302313|WDR48	MULTI-SECPEP	A375_MHC_IP_R1	1	520.6328125	2	520.298373	1038.58219	-0.28005	-0.00014571	0.20238	0.0001053	-0.077669	-4.0411E-05	520.2984615938617	43.069	0.30548	43.069	42.891	43.197	0					8	5	2	0	0	0	0.63327	1	14989	14989		13.042	0	1	1362700			40982	3241	30130	30368	39894	39894					0.06444547708861137
QLDPDEEL	8	Unmodified	_QLDPDEEL_					0	0	0			REV__nc|ENSG00000130396|P55196-1|AFDN	REV__nc|ENSG00000130396|P55196-1|AFDN	MULTI-SECPEP	A375_MHC_IP_R2	2	479.15576171875	2	479.72183	957.429106	-0.51146	-0.00024536	3.2281	0.0015486	2.7166	0.0013032	479.72085284465993	63.17	0.15074	63.912	63.788	63.938	0.74263					4	2	2	0	0	0	0.8824	1	23957	23957		16.942	3.4344	1	348290	+		40983	18537	30131	30369	39895	39895					-0.05131112198284882
QLDPIYVAY	9	Unmodified	_QLDPIYVAY_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B;nc|ENSG00000160305|Q14689-6|DIP2A;ENST00000478105.5_1_21:47981571-47987532:+|nuORF;ENSG00000151240|ENST00000280886|DIP2C;ENSG00000160305|ENST00000417564|DIP2A	ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C;ENSG00000160305|ENST00000417564|DIP2A	ENSG00000066084|ENST00000301180|DIP2B	MULTI-SECPEP	A375_MHC_IP_R1	1	541.6826782226562	2	541.281857	1080.54916	-0.47484	-0.00025702	-0.020965	-1.1348E-05	-0.49581	-0.00026837	541.2816913951909	105.93	0.86855	105.93	105.65	106.52	0					30	16	3	0	0	0	0.04038	1	38885	38885		75.761	45.124	1	4065300			40984	1403;5890;6415	30132	30370	39896	39896					0.012109208661286175
QLDPIYVAY	9	Unmodified	_QLDPIYVAY_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B;nc|ENSG00000160305|Q14689-6|DIP2A;ENST00000478105.5_1_21:47981571-47987532:+|nuORF;ENSG00000151240|ENST00000280886|DIP2C;ENSG00000160305|ENST00000417564|DIP2A	ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C;ENSG00000160305|ENST00000417564|DIP2A	ENSG00000066084|ENST00000301180|DIP2B	MULTI-MSMS	A375_MHC_IP_R2	2	1081.9581298828125	1	1081.55644	1080.54916	0.12793	0.00013836	-0.15128	-0.00016362	-0.023349	-2.5253E-05	1081.556208607191	105.18	0.4577	105.94	105.72	106.17	0.76308					19	8	3	0	0	0	0.04447	1	39868	39868		66.457	37.375	1	5163700			40985	1403;5890;6415	30132	30370	39897	39897					0.012109208661286175
QLDPIYVAY	9	Unmodified	_QLDPIYVAY_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B;nc|ENSG00000160305|Q14689-6|DIP2A;ENST00000478105.5_1_21:47981571-47987532:+|nuORF;ENSG00000151240|ENST00000280886|DIP2C;ENSG00000160305|ENST00000417564|DIP2A	ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C;ENSG00000160305|ENST00000417564|DIP2A	ENSG00000066084|ENST00000301180|DIP2B	MULTI-SECPEP	A375_MHC_IP_R2	2	541.681396484375	2	541.281857	1080.54916	-0.79662	-0.0004312	-0.19249	-0.00010419	-0.98911	-0.00053539	541.2815429783893	105.19	0.86529	105.95	105.67	106.53	0.76308					32	16	3	0	0	0	0.056023	1	39775	39775		66.457	35.82	1	4230300			40986	1403;5890;6415	30132	30370	39898	39898					0.012109208661286175
QLDPIYVAY	9	Unmodified	_QLDPIYVAY_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B;nc|ENSG00000160305|Q14689-6|DIP2A;ENST00000478105.5_1_21:47981571-47987532:+|nuORF;ENSG00000151240|ENST00000280886|DIP2C;ENSG00000160305|ENST00000417564|DIP2A	ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C;ENSG00000160305|ENST00000417564|DIP2A	ENSG00000066084|ENST00000301180|DIP2B	MULTI-MATCH	A375_MHC_IP_R1	1		1	1081.55644	1080.54916	0.25203	0.00027258	0.28003	0.00030287	0.53205	0.00057545	1081.5561897553882	105.94	0.45791	105.94	105.7	106.16	0	-0.0026916	0.00032388	NaN	66.457	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5369400			40987	1403;5890;6415	30132	30370							0.012109208661286175
QLDPQTVGV	9	Unmodified	_QLDPQTVGV_					0	0	0		SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	479.1560363769531	2	478.756007	955.497461	-0.45481	-0.00021774	0.70461	0.00033734	0.2498	0.00011959	478.756124966423	64.004	0.8131	64.004	63.58	64.393	0					33	15	3	0	0	0	0.10103	1	23138	23138		62.573	16.552	1	5762700			40988	9018	30133	30371	39899	39899					0.017931771722601297
QLDPQTVGV	9	Unmodified	_QLDPQTVGV_					0	0	0		SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	479.15576171875	2	478.756007	955.497461	-0.49985	-0.0002393	0.012581	6.0234E-06	-0.48726	-0.00023328	478.7558951960035	63.257	0.71178	63.998	63.633	64.344	0.74093					31	13	3	0	0	0	0.022401	1	23957	23957		99.755	27.833	1	6968100			40989	9018	30133	30371	39900	39900					0.017931771722601297
QLDPTLLQM	9	Unmodified	_QLDPTLLQM_					0	0	0		ENST00000566078.1_1_16:67644735-67645545:+|nuORF;ENSG00000102974|ENST00000264010|CTCF	ENST00000566078.1_1_16:67644735-67645545:+|nuORF	ENST00000566078.1_1_16:67644735-67645545:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	530.6829223632812	2	529.781167	1057.54778	-0.079273	-4.1998E-05	0.40432	0.0002142	0.32504	0.0001722	529.7811254552956	114.52	0.55838	114.52	114.21	114.77	0					15	10	2	0	0	0	0.021889	1	42021	42021		81.89	20.533	1	2233400			40990	2405	30134	30372	39901	39901					0.021309635057377818
QLDPTLLQM	9	Unmodified	_QLDPTLLQM_					0	0	0		ENST00000566078.1_1_16:67644735-67645545:+|nuORF;ENSG00000102974|ENST00000264010|CTCF	ENST00000566078.1_1_16:67644735-67645545:+|nuORF	ENST00000566078.1_1_16:67644735-67645545:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	529.781167	1057.54778	-0.37199	-0.00019707	0.11662	6.1785E-05	-0.25536	-0.00013529	530.2830742360676	113.7	0.604	114.41	114.13	114.73	0.70985	-0.055844	-0.00015072	NaN	81.89	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2659100			40991	2405	30134	30372							0.021309635057377818
QLDPTLLQM	9	Oxidation (M)	_QLDPTLLQM(Oxidation (M))_		QLDPTLLQM(1)		QLDPTLLQM(89)	0	0	1		ENST00000566078.1_1_16:67644735-67645545:+|nuORF;ENSG00000102974|ENST00000264010|CTCF	ENST00000566078.1_1_16:67644735-67645545:+|nuORF	ENST00000566078.1_1_16:67644735-67645545:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	538.1782836914062	2	537.778625	1073.5427	-0.57298	-0.00030813	-0.28948	-0.00015568	-0.86246	-0.00046381	537.7785353626649	82.732	1.0127	82.732	82.316	83.329	0					29	19	2	0	0	0	0.036758	1	30231	30231		89.401	17.478	1	2326400			40992	2405	30134	30373	39902	39902		107			0.008866596431289508
QLDQDQVEV	9	Unmodified	_QLDQDQVEV_					0	0	0		ENSG00000127311|ENST00000247815|HELB;nc|ENSG00000127311|Q8NG08-2|HELB	ENSG00000127311|ENST00000247815|HELB	ENSG00000127311|ENST00000247815|HELB	MULTI-SECPEP	A375_MHC_IP_R2	2	536.70556640625	2	537.259111	1072.50367	-0.76778	-0.00041249	-2.9143	-0.0015657	-3.6821	-0.0019782	537.2575659471554	109.53	0.30248	110.27	110.08	110.38	0.74683					6	5	2	0	0	0	0.73363	1	41331	41331		3.5965	0	1	593910			40993	4082	30135	30374	39903	39903					-0.029683493869015365
QLDRISVYY	9	Unmodified	_QLDRISVYY_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-SECPEP	A375_MHC_IP_R1	1	579.2031860351562	2	578.803488	1155.59242	-0.19465	-0.00011267	0.29069	0.00016825	0.096038	5.5587E-05	578.8035865953653	68.691	0.96487	68.691	68.361	69.326	0					42	18	3	0	0	0	0.011066	1	24876	24876		125.53	57.448	1	15213000			40994	9016	30136	30375	39904	39904					0.02085110643452026
QLDRISVYY	9	Unmodified	_QLDRISVYY_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-SECPEP	A375_MHC_IP_R2	2	579.1527709960938	2	578.803488	1155.59242	-0.14674	-8.4933E-05	-0.33222	-0.00019229	-0.47896	-0.00027723	578.8032316054711	67.964	0.7627	68.699	68.358	69.121	0.73511					43	14	4	0	0	0	0.011357	1	25756	25756		125.53	66.85	1	14427000			40995	9016	30136	30375	39905	39905					0.02085110643452026
QLDRRILAY	9	Unmodified	_QLDRRILAY_					0	0	0		nc|ENSG00000160284|Q9H0A9-2|SPATC1L;ENSG00000160284|ENST00000291672|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	MULTI-SECPEP	A375_MHC_IP_R2	2	383.3047180175781	3	383.224257	1146.65094	0.073816	2.8288E-05	0.63952	0.00024508	0.71333	0.00027337	383.2245018793876	47.331	0.40776	48.092	47.817	48.225	0.76128					14	7	3	0	0	0	0.65623	1	17730	17730		18.373	3.9677	1	1958000			40996	6411	30137	30376	39906	39906					0.0834821200855913
QLDRRILAY	9	Unmodified	_QLDRRILAY_					0	0	0		nc|ENSG00000160284|Q9H0A9-2|SPATC1L;ENSG00000160284|ENST00000291672|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	MULTI-MATCH	A375_MHC_IP_R1	1		3	383.224257	1146.65094	0.60271	0.00023097	-0.43718	-0.00016754	0.16553	6.3435E-05	383.2239229350765	48.179	0.35554	48.179	47.97	48.325	0	0.043591	-0.00042202	NaN	18.373	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1199300			40997	6411	30137	30376							0.0834821200855913
QLDSAQKNLY	10	Unmodified	_QLDSAQKNLY_					0	0	0		ENST00000453909.3_1_X:46387515-46388371:-|nuORF;ENST00000522017.5_1_X:46382546-46401540:-|nuORF;ENST00000521626.5_1_X:46382546-46401540:-|nuORF;nc|ENSG00000147121|Q5JUW0-3|KRBOX4;nc|ENSG00000147121|Q5JUW0-2|KRBOX4;ENSG00000147121|ENST00000344302|KRBOX4;nc|ENSG00000251192|Q2M3X9-2|ZNF674;ENSG00000251192|ENST00000683375|ZNF674;nc|ENSG00000251192|Q2M3X9|ZNF674	ENST00000453909.3_1_X:46387515-46388371:-|nuORF	ENST00000453909.3_1_X:46387515-46388371:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	590.7037963867188	2	590.303852	1178.59315	-0.36358	-0.00021462	2.607	0.0015389	2.2434	0.0013243	590.3055131131273	34.435	0.75819	34.435	34.154	34.912	0					41	14	4	0	0	0	0.040276	1	11329	11329		157.8	97.721	1	15807000			40998	12105	30138	30377	39907	39907					0.010999052924944408
QLDSAVKNLY	10	Unmodified	_QLDSAVKNLY_					0	0	0		ENSG00000149054|ENST00000278319|ZNF215;nc|ENSG00000149054|Q9UL58-2|ZNF215	ENSG00000149054|ENST00000278319|ZNF215	ENSG00000149054|ENST00000278319|ZNF215	MULTI-SECPEP	A375_MHC_IP_R1	1	576.2089233398438	2	575.808771	1149.60299	-0.17105	-9.8494E-05	0.56433	0.00032494	0.39327	0.00022645	575.8089236066996	57.492	0.45737	57.492	57.313	57.771	0					17	8	3	0	0	0	0.072569	1	20640	20640		99.755	57.8	1	4044800			40999	5779	30139	30378	39908	39908					0.034170932978668134
QLDSAVKNLY	10	Unmodified	_QLDSAVKNLY_					0	0	0		ENSG00000149054|ENST00000278319|ZNF215;nc|ENSG00000149054|Q9UL58-2|ZNF215	ENSG00000149054|ENST00000278319|ZNF215	ENSG00000149054|ENST00000278319|ZNF215	MULTI-SECPEP	A375_MHC_IP_R2	2	576.2083740234375	2	575.808771	1149.60299	-0.62698	-0.00036102	0.019773	1.1386E-05	-0.60721	-0.00034964	575.8087687537915	56.785	0.45701	57.535	57.255	57.712	0.75015					18	8	3	0	0	0	0.028101	1	21455	21455		114.2	59.428	1	6244000			41000	5779	30139	30378	39909	39909					0.034170932978668134
QLDSHVHAV	9	Unmodified	_QLDSHVHAV_					0	0	0		ENST00000462880.1_1_1:153631216-153631939:+|nuORF;ENST00000474959.5_1_1:153631216-153631408:+|nuORF;ENSG00000143553|ENST00000368685|SNAPIN	ENST00000462880.1_1_1:153631216-153631939:+|nuORF	ENST00000462880.1_1_1:153631216-153631939:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	503.3104248046875	2	503.259248	1004.50394	-0.6727	-0.00033854	0.21334	0.00010737	-0.45936	-0.00023118	503.2593533865718	23.61	0.1531	23.61	23.533	23.687	0					4	2	2	0	0	0	0.20094	1	6551	6551		28.487	17.663	1	4344500			41001	5408	30140	30379	39910	39910					0.0018711512361733185
QLDTHMELY	9	Oxidation (M)	_QLDTHM(Oxidation (M))ELY_		QLDTHM(1)ELY		QLDTHM(85)ELY	0	0	1		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	A375_MHC_IP_R1	1	583.6634521484375	2	583.263339	1164.51212	-0.24354	-0.00014205	-0.099413	-5.7984E-05	-0.34295	-0.00020003	583.2632091104986	43.934	0.50994	43.934	43.655	44.165	0					17	9	2	0	0	0	0.037185	1	15299	15299		85.272	13.35	1	6827800			41002	4099;14587;14586	30141	30380	39911	39911		213			-0.06355118741907972
QLDTHMELY	9	Oxidation (M)	_QLDTHM(Oxidation (M))ELY_					0	0	1		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	583.263339	1164.51212	-0.29561	-0.00017242	-0.64592	-0.00037674	-0.94153	-0.00054916	583.2629546691554	43.186	0.60786	43.959	43.623	44.231	0.7724	0.012266	-0.00031521	NaN	85.272	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6363800			41003	4099;14587;14586	30141	30380				213			-0.06355118741907972
QLDTHMELY	9	Unmodified	_QLDTHMELY_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	A375_MHC_IP_R2	2	575.6417846679688	2	575.265881	1148.51721	-0.31053	-0.00017864	1.1475	0.00066011	0.83695	0.00048147	575.2658313792193	65.37	0.91349	66.108	65.715	66.629	0.73811					48	17	5	0	0	0	0.01091	1	24770	24770		144.35	73.217	1	11604000			41004	4099;14587;14586	30141	30381	39912	39912					-0.05110814879276404
QLDVAGRVMQY	11	Unmodified	_QLDVAGRVMQY_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1;ENST00000529795.1_1_11:66001292-66002875:+|nuORF	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	MULTI-SECPEP	A375_MHC_IP_R2	2	640.7261352539062	2	640.326805	1278.63906	-0.72745	-0.0004658	-0.67321	-0.00043107	-1.4007	-0.00089688	640.3265367715477	67.498	0.40851	68.235	68.001	68.41	0.73631					15	7	3	0	0	0	0.14752	1	25586	25586		69.338	46.602	1	2000000			41005	7935	30142	30382	39913	39913					0.0108822720308126
QLEDDSLYI	9	Unmodified	_QLEDDSLYI_					0	0	0		nc|ENSG00000107829|P57775|FBXW4;ENSG00000107829|ENST00000331272|FBXW4	nc|ENSG00000107829|P57775|FBXW4	nc|ENSG00000107829|P57775|FBXW4	MULTI-MSMS	A375_MHC_IP_R2	2	548.17138671875	2	548.263862	1094.51317	-0.88484	-0.00048513	-4.3237	-0.0023705	-5.2086	-0.0028557	548.2620872446138	81.217	0.25262	81.962	81.828	82.08	0.74473					6	4	2	0	0	0	0.60101	1	30874	30874		14.838	2.3067	1	1916200			41006	2764	30143	30383	39914	39914					-0.030305811013704442
QLEDEALKY	9	Unmodified	_QLEDEALKY_					0	0	0		nc|ENSG00000108306|Q96IG2-2|FBXL20;ENSG00000108306|ENST00000264658|FBXL20	nc|ENSG00000108306|Q96IG2-2|FBXL20	nc|ENSG00000108306|Q96IG2-2|FBXL20	MULTI-SECPEP	A375_MHC_IP_R1	1	555.1793212890625	2	554.779679	1107.5448	-0.57335	-0.00031808	0.29186	0.00016192	-0.28149	-0.00015616	554.7797229015546	50.331	0.61422	50.331	49.998	50.613	0					17	11	2	0	0	0	0.025037	1	17833	17833		100.09	56.232	1	4468400			41007	2791	30144	30384	39915	39915					-0.00466588347421748
QLEDGRTLSDY	11	Unmodified	_QLEDGRTLSDY_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000143947|ENST00000272317|RPS27A;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000399822.2_1_9:22012279-22012411:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	A375_MHC_IP_R1	1	649.2064819335938	2	648.806956	1295.59936	-0.33244	-0.00021569	-0.053083	-3.4441E-05	-0.38552	-0.00025013	648.8070181089793	43.884	2.1856	43.884	43.451	45.636	0					132	42	6	0	0	0	4.6606E-35	3	15179	15179;15408;15641		251.2	158.55	1	527540000			41008	9678	30145	30385	39916;39917;39918	39916					-0.03661621266655857
QLEDGRTLSDY	11	Unmodified	_QLEDGRTLSDY_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000143947|ENST00000272317|RPS27A;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000399822.2_1_9:22012279-22012411:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	A375_MHC_IP_R2	2	649.2064208984375	2	648.806956	1295.59936	-0.57702	-0.00037437	-0.38869	-0.00025218	-0.9657	-0.00062655	648.8067867427023	43.178	2.2304	43.951	43.523	45.753	0.7724					131	43	6	0	0	0	6.118799999999999E-28	3	15988	15988;16224;16451		237.52	155	1	431510000			41009	9678	30145	30385	39919;39920;39921	39919					-0.03661621266655857
QLEDGRTLSDY	11	Unmodified	_QLEDGRTLSDY_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000143947|ENST00000272317|RPS27A;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000399822.2_1_9:22012279-22012411:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	A375_MHC_IP_R2	2	649.2061767578125	2	648.806956	1295.59936	-0.65126	-0.00042254	-0.22603	-0.00014665	-0.87729	-0.00056919	648.8068458779135	78.346	0.35583	79.09	78.93	79.286	0.74408					11	6	2	0	0	0	0.71476	1	29765	29765		14.405	5.0223	1	1313100			41010	9678	30145	30385	39922	39922					-0.03661621266655857
QLEDSYNQVQS	11	Unmodified	_QLEDSYNQVQS_					0	0	0		nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1;nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-3|GOLGB1	nc|ENSG00000173230|Q14789-3|GOLGB1	MULTI-MSMS	A375_MHC_IP_R1	1	656.6992797851562	2	655.796588	1309.57862	-0.45892	-0.00030096	0.60731	0.00039827	0.14839	9.7314E-05	655.7965552172304	43.881	0.66252	43.881	43.502	44.165	0					37	12	4	0	0	0	0.60848	1	15237	15237		22.658	4.5117	1	16249000			41011	7780	30146	30386	39923	39923					-0.06378211646324417
QLEDSYNQVQS	11	Unmodified	_QLEDSYNQVQS_					0	0	0		nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1;nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-3|GOLGB1	nc|ENSG00000173230|Q14789-3|GOLGB1	MULTI-SECPEP	A375_MHC_IP_R2	2	656.1959838867188	2	655.796588	1309.57862	-0.75451	-0.00049481	0.37672	0.00024705	-0.3778	-0.00024776	655.7964901200966	43.149	0.65821	43.921	43.623	44.282	0.7724					37	12	4	0	0	0	0.58862	1	16051	16051		45.74	5.7902	1	11135000			41012	7780	30146	30386	39924	39924					-0.06378211646324417
QLEEEEEF	8	Unmodified	_QLEEEEEF_					0	0	0			REV__ENST00000554130.5_1_14:96968887-96993844:+|nuORF	REV__ENST00000554130.5_1_14:96968887-96993844:+|nuORF	MSMS	A375_MHC_IP_R2	2	526.6754760742188	2	526.724569	1051.43459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.194	1	79.938	79.438	80.438	0.74474								0	0	0	0.16876	1	30054	30054		13.508	0.97634	1		+		41013	16923	30147	30387	39925	39925					-0.08907433406466225
QLEGRKLW	8	Unmodified	_QLEGRKLW_					0	0	0		ENSG00000170468|ENST00000304061|RIOX1;nc|ENSG00000170468|Q9H6W3-2|RIOX1	ENSG00000170468|ENST00000304061|RIOX1	ENSG00000170468|ENST00000304061|RIOX1	MULTI-SECPEP	A375_MHC_IP_R2	2	515.165771484375	2	515.295633	1028.57671	-0.74038	-0.00038151	-0.08293	-4.2734E-05	-0.82331	-0.00042425	515.2955436339514	103.4	1.1189	104.16	103.53	104.65	0.76428					55	21	4	0	0	0	0.69059	1	39097	39097		38.151	0	1	28511000			41014	7510	30148	30388	39926	39926					0.06356868917032443
QLEKLDLY	8	Unmodified	_QLEKLDLY_					0	0	0		ENST00000432815.2_1_1:173332252-173332432:-|nuORF	ENST00000432815.2_1_1:173332252-173332432:-|nuORF	ENST00000432815.2_1_1:173332252-173332432:-|nuORF	MSMS	A375_MHC_IP_R2	2	511.21380615234375	2	511.281857	1020.54916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.1	1	104.87	104.37	105.37	0.76308								0	0	0	0.16876	1	39398	39398		15.768	0	1				41015	11885	30149	30389	39927	39927					0.03970920866140659
QLEKLIEKNY	10	Unmodified	_QLEKLIEKNY_					0	0	0		ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-SECPEP	A375_MHC_IP_R1	1	427.2947692871094	3	426.574844	1276.7027	-0.20237	-8.6324E-05	0.96976	0.00041367	0.76739	0.00032735	426.57537772638165	58.734	0.35532	58.734	58.531	58.887	0					10	6	2	0	0	0	0.91932	1	21070	21070		5.0475	0	1	1283100			41016	1885	30150	30390	39928	39928					0.07541910911822924
QLEKVVRKI	9	Unmodified	_QLEKVVRKI_					0	0	0			REV__nc|ENSG00000103150|O95822-2|MLYCD	REV__nc|ENSG00000103150|O95822-2|MLYCD	MULTI-SECPEP	A375_MHC_IP_R2	2	370.9644775390625	3	371.576519	1111.70773	0.35095	0.0001304	-0.51313	-0.00019067	-0.16219	-6.0266E-05	371.91065731268014	28.029	0.70885	28.707	28.251	28.96	0.67857					19	13	2	0	0	0	0.7911	1	9526	9526		2.2828	0	1	1396200	+		41017	17253	30151	30391	39929	39929					0.15634259565081265
QLELMRPL	8	Unmodified	_QLELMRPL_					0	0	0			REV__ENSG00000162496|ENST00000616661|DHRS3	REV__ENSG00000162496|ENST00000616661|DHRS3	MULTI-MSMS	A375_MHC_IP_R2	2	501.1867980957031	2	500.28642	998.558287	-0.58404	-0.00029218	-2.7725	-0.001387	-3.3565	-0.0016792	500.7868743369397	127.13	1.1137	127.39	127.26	128.37	0.26592					23	21	2	0	0	0	0.70206	1	49792	49792		34.102	7.2188	1	43466000	+		41018	20260	30152	30392	39930	39930					0.05894990950821466
QLELRHHLIHL	11	Unmodified	_QLELRHHLIHL_					0	0	0			REV__ENSG00000198707|ENST00000552810|CEP290	REV__ENSG00000198707|ENST00000552810|CEP290	MULTI-SECPEP	A375_MHC_IP_R1	1	470.676513671875	3	470.277244	1407.8099	-0.43583	-0.00020496	-1.6176	-0.00076072	-2.0534	-0.00096569	470.27636730643235	32.049	0.36074	32.049	31.87	32.231	0					11	6	2	0	0	0	1.0002	1	10356	10356		1.3296	0.92138	1	2637500	+		41019	22399	30153	30393	39931	39931					0.12230925636708889
QLEMGLESF	9	Unmodified	_QLEMGLESF_					0	0	0		ENSG00000070601|ENST00000377765|FRMPD1	ENSG00000070601|ENST00000377765|FRMPD1	ENSG00000070601|ENST00000377765|FRMPD1	MULTI-MSMS	A375_MHC_IP_R1	1	528.678955078125	2	527.2497	1052.48485	-0.32404	-0.00017085	-0.19838	-0.0001046	-0.52242	-0.00027545	527.2496440631186	78.73	1.987	78.73	78.251	80.238	0					93	38	5	0	0	0	0.53367	1	28815	28815		18.146	1.2041	1	48379000			41020	1495	30154	30394	39932	39932					-0.03929602282300948
QLEPNPHTKY	10	Unmodified	_QLEPNPHTKY_					0	0	0		ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;ERBB3|p.A805Gfs*22|1|0.26|ENSG00000065361|chr12:56097177-56097178|-/G|frameshift_variant;nc|ENSG00000065361|P21860-3|ERBB3	ENSG00000065361|ENST00000267101|ERBB3	ENSG00000065361|ENST00000267101|ERBB3	MULTI-MSMS	A375_MHC_IP_R2	2	410.27783203125	3	409.543655	1225.60914	-0.3212	-0.00013155	-0.12053	-4.9362E-05	-0.44173	-0.00018091	409.87800847554485	21.295	0.50666	21.914	21.625	22.132	0.61932					10	9	2	0	0	0	0.55864	1	6707	6707		23.964	13.065	1	2860900			41021	1379	30155	30395	39933	39933					0.0053561152938073064
QLEQDVLSY	9	Unmodified	_QLEQDVLSY_					0	0	0		nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123170580-123298708:-|nuORF	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6978759765625	2	547.771854	1093.52915	-0.45801	-0.00025088	1.1442	0.00062674	0.68616	0.00037586	548.2738057936698	81.774	0.60706	81.774	81.556	82.163	0					20	11	3	0	0	0	0.50702	1	29935	29935		19.257	4.4187	1	2355100			41022	4830	30156	30396	39934	39934					-0.01386874864465426
QLEQDVLSY	9	Unmodified	_QLEQDVLSY_					0	0	0		nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123170580-123298708:-|nuORF	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	MULTI-SECPEP	A375_MHC_IP_R2	2	548.17138671875	2	547.771854	1093.52915	-0.88609	-0.00048537	1.1135	0.00060996	0.22744	0.00012459	547.7722863936639	81.184	0.70939	81.929	81.622	82.332	0.74474					19	13	2	0	0	0	0.53748	1	30874	30874		24.021	6.9077	1	1378500			41023	4830	30156	30396	39935	39935					-0.01386874864465426
QLERINVYY	9	Unmodified	_QLERINVYY_					0	0	0		ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000261456|ENST00000568584|TUBB8;ENST00000445286.3_1_12:38595738-38596634:+|nuORF;ENST00000489942.1_1_6:3155224-3157697:-|nuORF;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;ENST00000404155.1_1_6:3177457-3179994:-|nuORF;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENST00000587204.1_1_18:12308291-12311096:+|nuORF	ENSG00000188229|ENST00000340384|TUBB4B;ENST00000404155.1_1_6:3177457-3179994:-|nuORF;ENST00000417736.2_1_18:12308439-12326126:+|nuORF	ENSG00000188229|ENST00000340384|TUBB4B	MULTI-SECPEP	A375_MHC_IP_R1	1	600.0357055664062	2	599.316763	1196.61897	-0.43635	-0.00026151	0.83	0.00049743	0.39365	0.00023592	599.3170166604112	64.557	0.5606	64.557	64.343	64.903	0					16	10	2	0	0	0	0.54812	1	23326	23326		20.454	0	1	1013600			41024	4872;7993;11580	30157	30397	39936	39936					0.028527995347758406
QLETPTQL	8	Unmodified	_QLETPTQL_					0	0	0			REV__ENST00000439987.6_1_16:1604037-1657279:-|nuORF	REV__ENST00000439987.6_1_16:1604037-1657279:-|nuORF	MSMS	A375_MHC_IP_R2	2	465.1768493652344	2	465.250557	928.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.9	1	100.66	100.16	101.16	0.76278								0	0	0	0.16876	1	37890	37890		28.487	9.0478	1		+		41025	22025	30158	30398	39937	39937					0.01945774797957256
QLEVIKRQL	9	Unmodified	_QLEVIKRQL_					0	0	0			REV__ENSG00000153347|ENST00000283357|FAM81B	REV__ENSG00000153347|ENST00000283357|FAM81B	MULTI-MSMS	A375_MHC_IP_R1	1	375.9643859863281	3	376.236274	1125.68699	-0.031136	-1.1715E-05	0.058907	2.2163E-05	0.027771	1.0448E-05	376.236196121223	29.716	1.6557	29.716	29.403	31.059	0					56	32	2	0	0	0	0.12748	1	9391	9391		45.74	0	1	16284000	+		41026	19839	30159	30399	39938	39938					0.12917669185435443
QLEWDDSTLSY	11	Unmodified	_QLEWDDSTLSY_					0	0	0		ENSG00000171603|ENST00000377298|CLSTN1;nc|ENSG00000171603|O94985-2|CLSTN1;ENST00000477264.1_1_1:9790568-9793533:-|nuORF	ENSG00000171603|ENST00000377298|CLSTN1	ENSG00000171603|ENST00000377298|CLSTN1	MULTI-MSMS	A375_MHC_IP_R1	1	679.2015380859375	2	678.80134	1355.58813	-0.43577	-0.0002958	-0.032498	-2.206E-05	-0.46827	-0.00031786	678.8014166678029	106.66	0.50966	106.66	106.42	106.93	0					21	9	3	0	0	0	0.00076059	1	39148	39148		107.1	84.363	1	2327400			41027	7619	30160	30400	39939	39939					-0.07544443360802688
QLFEKQLQL	9	Unmodified	_QLFEKQLQL_					0	0	0		nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12;ENSG00000127947|ENST00000248594|PTPN12	nc|ENSG00000127947|Q05209-2|PTPN12	nc|ENSG00000127947|Q05209-2|PTPN12	MULTI-SECPEP	A375_MHC_IP_R1	1	574.2290649414062	2	573.829506	1145.64446	-0.13998	-8.0324E-05	0.48328	0.00027732	0.3433	0.00019699	573.8295134110492	79.342	0.61515	79.342	79.061	79.676	0					24	11	3	0	0	0	0.004037	1	28943	28943		179.17	89.773	1	5247000			41028	4111	30161	30401	39940	39940					0.07746274057171831
QLFEKQLQL	9	Unmodified	_QLFEKQLQL_					0	0	0		nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12;ENSG00000127947|ENST00000248594|PTPN12	nc|ENSG00000127947|Q05209-2|PTPN12	nc|ENSG00000127947|Q05209-2|PTPN12	MULTI-MSMS	A375_MHC_IP_R2	2	573.8786010742188	2	573.829506	1145.64446	-0.18072	-0.0001037	0.57806	0.00033171	0.39734	0.00022801	573.8293699144141	78.517	0.86266	79.261	78.728	79.591	0.74474					29	16	3	0	0	0	0.0098085	2	29773	29773;29803		114.2	34.605	1	7631800			41029	4111	30161	30401	39941;39942	39941					0.07746274057171831
QLFEKQLQL	9	Unmodified	_QLFEKQLQL_					0	0	0		nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12;ENSG00000127947|ENST00000248594|PTPN12	nc|ENSG00000127947|Q05209-2|PTPN12	nc|ENSG00000127947|Q05209-2|PTPN12	MULTI-SECPEP	A375_MHC_IP_R2	2	574.5818481445312	2	573.829506	1145.64446	-0.22001	-0.00012625	-0.30406	-0.00017448	-0.52407	-0.00030073	573.8293768942781	102.92	0.50836	103.69	103.38	103.89	0.76428					22	9	3	0	0	0	0.16764	1	38957	38957		60.074	22.1	1	5470500			41030	4111	30161	30401	39943	39943					0.07746274057171831
QLFEKQLQL	9	Unmodified	_QLFEKQLQL_					0	0	0		nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12;ENSG00000127947|ENST00000248594|PTPN12	nc|ENSG00000127947|Q05209-2|PTPN12	nc|ENSG00000127947|Q05209-2|PTPN12	MULTI-MATCH	A375_MHC_IP_R1	1		2	573.829506	1145.64446	-0.19577	-0.00011234	-0.37162	-0.00021325	-0.56739	-0.00032559	573.8291094608977	103.84	0.45749	103.84	103.52	103.98	0	0.07653	-5.2107E-05	NaN	75.761	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4641900			41031	4111	30161	30401							0.07746274057171831
QLFFFILHFWV	11	Unmodified	_QLFFFILHFWV_					0	0	0		nc|ENSG00000203970|Q30KQ9-2|DEFB110;ENSG00000203970|ENST00000371148|DEFB110	nc|ENSG00000203970|Q30KQ9-2|DEFB110	nc|ENSG00000203970|Q30KQ9-2|DEFB110	MULTI-SECPEP	A375_MHC_IP_R1	1	500.3615417480469	3	499.607819	1495.80163	-0.63986	-0.00031968	0.898	0.00044865	0.25814	0.00012897	499.6082254115751	133.47	0.7644	133.47	133.25	134.02	0					20	14	2	0	0	0	1.0014	1	51520	51520		0.50596	0.50596	1	3128400			41032	14854	30162	30402	39944	39944					0.07355978667351337
QLFKIIDKK	9	Unmodified	_QLFKIIDKK_					0	0	0			REV__ENSG00000100442|ENST00000396062|FKBP3	REV__ENSG00000100442|ENST00000396062|FKBP3	MULTI-SECPEP	A375_MHC_IP_R2	2	567.494873046875	2	566.858067	1131.70158	-0.20454	-0.00011594	3.6158	0.0020496	3.4112	0.0019337	566.8600802527345	142.37	0.20383	142.41	142.23	142.43	0.030731					5	3	2	0	0	0	0.81363	1	55604	55604		1.8442	0	1	474750	+		41033	17094	30163	30403	39945	39945					0.14099741333575366
QLFKKPRQV	9	Unmodified	_QLFKKPRQV_					0	0	0		ENST00000472073.1_1_22:19121711-19131632:-|nuORF;ENSG00000100056|ENST00000252137|ESS2	ENST00000472073.1_1_22:19121711-19131632:-|nuORF	ENST00000472073.1_1_22:19121711-19131632:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	382.58074951171875	3	381.904747	1142.69241	0.058017	2.2157E-05	0.41871	0.00015991	0.47673	0.00018207	381.90473795776836	23.795	0.25386	23.795	23.635	23.889	0					7	4	2	0	0	0	0.72623	1	6601	6601		13.615	2.097	1	2276200			41034	2108	30164	30404	39946	39946					0.12677392767886886
QLFQCLHLF	9	Unmodified	_QLFQCLHLF_					0	0	0			REV__ENST00000505447.5_1_4:7765494-7780765:-|nuORF	REV__ENST00000505447.5_1_4:7765494-7780765:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	575.1661987304688	2	574.799694	1147.58484	-0.37595	-0.0002161	1.836	0.0010554	1.4601	0.00083926	574.8009167008288	51.341	0.3551	52.093	51.864	52.219	0.75225					9	6	2	0	0	0	0.65246	1	19342	19342		15.847	0	1	2310200	+		41035	25534	30165	30405	39947	39947					0.016946798421486164
QLFSEIHNL	9	Unmodified	_QLFSEIHNL_					0	0	0		nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123170580-123298708:-|nuORF	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	550.6168823242188	2	550.790381	1099.56621	-0.43483	-0.0002395	0.27357	0.00015068	-0.16126	-8.882E-05	550.7903658848745	81.936	0.7599	81.936	81.556	82.316	0					27	14	3	0	0	0	0.011357	1	29993	29993		83.429	53.588	1	5391800			41036	4830	30166	30406	39948	39948					0.02040841471944077
QLFSEIHNL	9	Unmodified	_QLFSEIHNL_					0	0	0		nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123170580-123298708:-|nuORF	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6166381835938	2	550.790381	1099.56621	-0.88282	-0.00048625	0.49866	0.00027466	-0.38416	-0.00021159	550.7904431677827	81.043	0.96371	81.788	81.52	82.484	0.74473					28	18	3	0	0	0	0.011066	1	30792	30792		93.166	56.66	1	4850200			41037	4830	30166	30406	39949	39949					0.02040841471944077
QLFSQQHFL	9	Unmodified	_QLFSQQHFL_					0	0	0		ENSG00000182095|ENST00000430969|TNRC18;nc|ENSG00000182095|O15417-2|TNRC18	ENSG00000182095|ENST00000430969|TNRC18;nc|ENSG00000182095|O15417-2|TNRC18	ENSG00000182095|ENST00000430969|TNRC18	MULTI-SECPEP	A375_MHC_IP_R1	1	574.7068481445312	2	574.298373	1146.58219	-0.089534	-5.1419E-05	-0.22527	-0.00012937	-0.3148	-0.00018079	574.2982117747638	82.021	0.711	82.021	81.707	82.418	0					37	13	4	0	0	0	0.0095758	1	29946	29946		183.04	139.18	1	15299000			41038	8375;14801	30167	30407	39950	39950					0.014765477088531043
QLFSQQHFL	9	Unmodified	_QLFSQQHFL_					0	0	0		ENSG00000182095|ENST00000430969|TNRC18;nc|ENSG00000182095|O15417-2|TNRC18	ENSG00000182095|ENST00000430969|TNRC18;nc|ENSG00000182095|O15417-2|TNRC18	ENSG00000182095|ENST00000430969|TNRC18	MULTI-SECPEP	A375_MHC_IP_R2	2	574.6978759765625	2	574.298373	1146.58219	-0.32256	-0.00018524	-0.35605	-0.00020448	-0.6786	-0.00038972	574.2981009714935	81.057	0.76116	81.802	81.52	82.281	0.74474					34	14	3	0	0	0	0.01147	1	30819	30819		136.33	136.33	1	13315000			41039	8375;14801	30167	30407	39951	39951					0.014765477088531043
QLGCLIEYLF	10	Unmodified	_QLGCLIEYLF_					0	0	0		tr|U7SV73|U7SV73_FUSNUApea-likeHEPNdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01541PE=4SV=1	tr|U7SV73|U7SV73_FUSNUApea-likeHEPNdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01541PE=4SV=1	tr|U7SV73|U7SV73_FUSNUApea-likeHEPNdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01541PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	400.9367370605469	3	400.210737	1197.61038	-0.053393	-2.1368E-05	-0.496	-0.00019851	-0.5494	-0.00021987	400.5438745932812	44.279	0.25574	44.279	44.165	44.42	0					6	4	2	0	0	0	0.91643	1	15412	15412		5.4027	0	1	1303000			41040	29790	30168	30408	39952	39952					0.019481095739138254
QLGDFLIKV	9	Unmodified	_QLGDFLIKV_					0	0	0		ENSG00000112855|ENST00000230771|HARS2;nc|ENSG00000112855|P49590-2|HARS2;ENST00000510104.5_1_5:140071123-140075505:+|nuORF	ENSG00000112855|ENST00000230771|HARS2	ENSG00000112855|ENST00000230771|HARS2	MULTI-SECPEP	A375_MHC_IP_R1	1	517.207763671875	2	516.808042	1031.60153	-0.30261	-0.00015639	-0.16519	-8.5372E-05	-0.4678	-0.00024176	516.8080075524074	109.13	0.40627	109.13	108.97	109.37	0					13	7	2	0	0	0	0.056023	1	40043	40043		75.761	19.584	1	1561600			41041	3115	30169	30409	39953	39953					0.08699503999764602
QLGDFLIKV	9	Unmodified	_QLGDFLIKV_					0	0	0		ENSG00000112855|ENST00000230771|HARS2;nc|ENSG00000112855|P49590-2|HARS2;ENST00000510104.5_1_5:140071123-140075505:+|nuORF	ENSG00000112855|ENST00000230771|HARS2	ENSG00000112855|ENST00000230771|HARS2	MULTI-SECPEP	A375_MHC_IP_R2	2	517.207763671875	2	516.808042	1031.60153	-0.75045	-0.00038784	-0.77046	-0.00039818	-1.5209	-0.00078602	516.8079397131584	108.26	0.51101	109.01	108.76	109.27	0.75436					16	9	2	0	0	0	0.13208	1	40897	40897		57.722	21.595	1	1651300			41042	3115	30169	30409	39954	39954					0.08699503999764602
QLGPSNSLW	9	Unmodified	_QLGPSNSLW_					0	0	0		ENSG00000121274|ENST00000561678|TENT4B	ENSG00000121274|ENST00000561678|TENT4B	ENSG00000121274|ENST00000561678|TENT4B	MULTI-SECPEP	A375_MHC_IP_R1	1	501.6556701660156	2	501.256174	1000.49779	-0.26127	-0.00013096	0.045754	2.2934E-05	-0.21552	-0.00010803	501.2564731376032	56.229	0.9143	56.229	55.991	56.905	0					23	17	2	0	0	0	0.53748	1	20149	20149		24.021	5.8856	1	1870900			41043	3714	30170	30410	39955	39955					-0.0024340310790194053
QLHFSIDKIS	10	Unmodified	_QLHFSIDKIS_					0	0	0			REV__nc|ENSG00000104047|Q8N5C7-2|DTWD1	REV__nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-MSMS	A375_MHC_IP_R1	1	396.5840148925781	3	396.552151	1186.63462	-0.13723	-5.4418E-05	0.36001	0.00014276	0.22279	8.8346E-05	396.55186506545846	34.583	0.25423	34.583	34.353	34.608	0					5	4	2	0	0	0	0.70565	1	11384	11384		9.7643	3.1339	1	585750	+		41044	17298	30171	30411	39956	39956					0.04877086051783408
QLHQLHSRL	9	Unmodified	_QLHQLHSRL_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-SECPEP	A375_MHC_IP_R1	1	378.6256408691406	3	377.884235	1130.63087	0.47249	0.00017854	0.35835	0.00013541	0.83083	0.00031396	377.88423832591803	20.558	0.71367	20.558	20.283	20.997	0					20	13	2	0	0	0	0.76827	1	5419	5419		4.1895	0	1	949480			41045	9483	30172	30412	39957	39957					0.07078461068613251
QLHRWHPV	8	Unmodified	_QLHRWHPV_					0	0	0			REV__nc|ENSG00000197901|Q4U2R8-3|SLC22A6	REV__nc|ENSG00000197901|Q4U2R8-3|SLC22A6	MULTI-SECPEP	A375_MHC_IP_R1	1	357.6119384765625	3	358.198154	1071.57263	0.30907	0.00011071	-1.4295	-0.00051203	-1.1204	-0.00040133	358.1975821712026	42.984	0.35611	42.984	42.841	43.197	0					11	6	2	0	0	0	0.972	1	14998	14998		0.40072	0.40072	1	1113800	+		41046	22329	30173	30413	39958	39958					0.0397082421397954
QLHWLTTSY	9	Unmodified	_QLHWLTTSY_					0	0	0			REV__ENST00000533415.5_1_17:45198303-45266605:-|nuORF	REV__ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	382.95257568359375	3	383.529346	1147.56621	-0.24098	-9.2423E-05	0.099823	3.8285E-05	-0.14116	-5.4138E-05	383.52953531159216	48.991	0.4594	49.748	49.485	49.944	0.75737					12	8	2	0	0	0	0.78348	1	18437	18437		2.4985	1.5362	1	1242800	+		41047	16104	30174	30414	39959	39959					-0.001671585280519139
QLIDAVLNL	9	Unmodified	_QLIDAVLNL_					0	0	0		ENSG00000164880|ENST00000404767|INTS1;ENST00000468115.1_1_7:1523234-1533501:-|nuORF	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	A375_MHC_IP_R1	1	998.6978759765625	1	998.588073	997.580796	-0.0043711	-4.365E-06	2.4267	0.0024232	2.4223	0.0024189	998.5899943211733	129.93	0.20145	129.93	129.8	130.01	0					5	3	2	0	0	0	0.0028773	1	49997	49997		193.29	55.871	1	11032000			41048	6889	30175	30415	39960	39960					0.08190913620080664
QLIDIIHTA	9	Unmodified	_QLIDIIHTA_					0	0	0		nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	MULTI-SECPEP	A375_MHC_IP_R1	1	512.6952514648438	2	512.295299	1022.57605	-0.67785	-0.00034726	0.099506	5.0977E-05	-0.57834	-0.00029628	512.2953104025394	84.622	0.9149	84.622	84.141	85.056	0					34	17	3	0	0	0	0.008833	1	30983	30983		160.52	60.144	1	9544500			41049	14622	30176	30416	39961	39961					0.06566029477323809
QLIDIIHTA	9	Unmodified	_QLIDIIHTA_					0	0	0		nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	MULTI-SECPEP	A375_MHC_IP_R2	2	512.6943359375	2	512.295299	1022.57605	-0.69575	-0.00035643	0.076962	3.9427E-05	-0.61879	-0.000317	512.2952632716641	83.78	1.0729	84.52	84.203	85.276	0.73962					39	20	4	0	0	0	9.5323E-05	1	31813	31813		191.38	63.015	1	7948700			41050	14622	30176	30416	39962	39962					0.06566029477323809
QLIDKVWQL	9	Unmodified	_QLIDKVWQL_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENST00000587491.5_1_17:75207779-75210102:+|nuORF	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-SECPEP	A375_MHC_IP_R1	1	572.2322998046875	2	571.832049	1141.64954	-0.23594	-0.00013492	0.074796	4.2771E-05	-0.16114	-9.2144E-05	571.8320540185919	103.85	1.5751	103.85	103.42	104.99	0					77	30	4	0	0	0	0.006265	1	38065	38065		171.09	171.09	1	88608000			41051	4204	30177	30417	39963	39963					0.08438577919810086
QLIDKVWQL	9	Unmodified	_QLIDKVWQL_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENST00000587491.5_1_17:75207779-75210102:+|nuORF	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-SECPEP	A375_MHC_IP_R2	2	572.2315673828125	2	571.832049	1141.64954	-0.26307	-0.00015043	-0.11689	-6.684E-05	-0.37996	-0.00021727	571.8319205294468	102.95	1.4732	103.71	103.33	104.8	0.76428					71	28	4	0	0	0	9.5655E-14	1	38926	38926		201.57	201.57	1	99659000			41052	4204	30177	30417	39964	39964					0.08438577919810086
QLIDLDHKL	9	Unmodified	_QLIDLDHKL_					0	0	0		ENSG00000118096|ENST00000264021|IFT46;ENST00000531201.5_1_11:118415633-118427808:-|nuORF;nc|ENSG00000118096|Q9NQC8-2|IFT46;IFT46|p.P90T|1|0.38|ENSG00000118096|chr11:118555076-118555076|G/T|missense_variant	ENSG00000118096|ENST00000264021|IFT46	ENSG00000118096|ENST00000264021|IFT46	MULTI-MSMS	A375_MHC_IP_R1	1	365.94512939453125	3	365.544996	1093.61316	0.18675	6.8264E-05	-0.0012751	-4.661E-07	0.18547	6.7798E-05	365.54492044370505	61.144	0.45951	61.144	60.871	61.331	0					22	8	3	0	0	0	0.12591	1	22019	22019		46.022	20.002	1	7743600			41053	3524	30178	30418	39965	39965					0.07009701023071102
QLIDLDHKL	9	Unmodified	_QLIDLDHKL_					0	0	0		ENSG00000118096|ENST00000264021|IFT46;ENST00000531201.5_1_11:118415633-118427808:-|nuORF;nc|ENSG00000118096|Q9NQC8-2|IFT46;IFT46|p.P90T|1|0.38|ENSG00000118096|chr11:118555076-118555076|G/T|missense_variant	ENSG00000118096|ENST00000264021|IFT46	ENSG00000118096|ENST00000264021|IFT46	MULTI-MSMS	A375_MHC_IP_R2	2	365.9450378417969	3	365.544996	1093.61316	-0.26298	-9.6129E-05	0.17808	6.5097E-05	-0.084893	-3.1032E-05	365.5450541535508	60.236	0.61229	60.981	60.701	61.314	0.74503					32	11	4	0	0	0	0.068433	1	22787	22787		57.108	16.868	1	10582000			41054	3524	30178	30418	39966	39966					0.07009701023071102
QLIDLDHKL	9	Unmodified	_QLIDLDHKL_					0	0	0		ENSG00000118096|ENST00000264021|IFT46;ENST00000531201.5_1_11:118415633-118427808:-|nuORF;nc|ENSG00000118096|Q9NQC8-2|IFT46;IFT46|p.P90T|1|0.38|ENSG00000118096|chr11:118555076-118555076|G/T|missense_variant	ENSG00000118096|ENST00000264021|IFT46	ENSG00000118096|ENST00000264021|IFT46	MULTI-SECPEP	A375_MHC_IP_R2	2	548.2139892578125	2	547.813856	1093.61316	-1.1046	-0.00060511	0.83753	0.00045881	-0.26705	-0.00014629	547.8140998659206	60.217	0.46022	60.963	60.752	61.212	0.74578					13	8	2	0	0	0	0.14606	1	22816	22816		55.503	26.421	1	1511900			41055	3524	30178	30418	39967	39967					0.07009701023071102
QLIDYERQL	9	Unmodified	_QLIDYERQL_					0	0	0		ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	MULTI-SECPEP	A375_MHC_IP_R1	1	589.71337890625	2	589.31422	1176.61389	-0.64254	-0.00037866	-0.031607	-1.8626E-05	-0.67415	-0.00039728	589.313993911308	67.424	0.66048	67.424	67.194	67.854	0					29	12	3	0	0	0	0.0082179	1	24419	24419		152.89	67.614	1	6507300			41056	10016	30179	30419	39968	39968					0.032644956721242124
QLIDYERQL	9	Unmodified	_QLIDYERQL_					0	0	0		ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	MULTI-SECPEP	A375_MHC_IP_R2	2	589.7139892578125	2	589.31422	1176.61389	-0.65538	-0.00038623	0.074151	4.3698E-05	-0.58123	-0.00034253	589.3142790962708	66.778	0.61089	67.515	67.24	67.85	0.73631					27	11	3	0	0	0	0.011031	1	25276	25276		140.63	75.398	1	8155500			41057	10016	30179	30419	39969	39969					0.032644956721242124
QLIEPKSRR	9	Unmodified	_QLIEPKSRR_					0	0	0			REV__ENST00000395811.9_1_17:17049405-17050694:+|nuORF	REV__ENST00000395811.9_1_17:17049405-17050694:+|nuORF	MSMS	A375_MHC_IP_R2	2	563.7349243164062	2	563.838197	1125.66184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.03	1	145.06	144.56	145.56	0.021408								0	0	0	0.15486	1	56635	56635		1.8442	0	1		+		41058	24329	30180	30420	39970	39970					0.10403614382857995
QLIKELPEL	9	Unmodified	_QLIKELPEL_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-SECPEP	A375_MHC_IP_R1	1	542.2261962890625	2	541.826432	1081.63831	-0.47869	-0.00025937	0.23689	0.00012836	-0.2418	-0.00013101	541.8264506685443	88.791	0.71046	88.791	88.51	89.221	0					30	13	4	0	0	0	0.010874	1	32586	32586		137.42	65.502	1	8353000			41059	7485	30181	30421	39971	39971					0.10075755825664601
QLIKELPEL	9	Unmodified	_QLIKELPEL_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-SECPEP	A375_MHC_IP_R2	2	541.2057495117188	2	541.826432	1081.63831	-0.76068	-0.00041215	0.23277	0.00012612	-0.52791	-0.00028603	541.8265071546881	87.914	0.76093	88.646	88.316	89.077	0.7318					32	14	3	0	0	0	0.010978	1	33471	33471		129.77	51.623	1	9662500			41060	7485	30181	30421	39972	39972					0.10075755825664601
QLILPEDKSIT	11	Unmodified	_QLILPEDKSIT_					0	0	0			REV__NRAP|p.F771I|1|0.3|ENSG00000197893|chr10:113624864-113624864|A/T|missense_variant	REV__NRAP|p.F771I|1|0.3|ENSG00000197893|chr10:113624864-113624864|A/T|missense_variant	MSMS	A375_MHC_IP_R1	1	629.0800170898438	2	628.85846	1255.70237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.97	1	105.97	105.47	106.47	0								0	0	0	0.16124	1	38901	38901		12.241	2.1667	1		+		41061	27627	30182	30422	39973	39973					0.08474491191941524
QLIMSINKY	9	Unmodified	_QLIMSINKY_					0	0	0			REV__tr|U7T2K5|U7T2K5_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00606PE=3SV=1	REV__tr|U7T2K5|U7T2K5_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00606PE=3SV=1	MSMS	A375_MHC_IP_R2	2	555.476806640625	2	555.30481	1108.59507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.538	1	50.295	49.795	50.795	0.75737								0	0	0	0.15486	1	18615	18615		12.532	0	1		+		41062	28748	30183	30423	39974	39974					0.04511242776743529
QLINNAIYEI	10	Unmodified	_QLINNAIYEI_					0	0	0		tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1	tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1	tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	596.2239990234375	2	595.824421	1189.63429	-0.55365	-0.00032988	0.40642	0.00024215	-0.14723	-8.7723E-05	595.8246314472269	102.92	0.60936	103.69	103.43	104.04	0.76428					21	11	3	0	0	0	0.6774	1	39001	39001		34.402	1.616	1	2544900			41063	29585	30184	30424	39975	39975					0.04705666331938119
QLIPALAKV	9	Unmodified	_QLIPALAKV_					0	0	0		nc|ENSG00000112319|O95677-5|EYA4;nc|ENSG00000112319|O95677-2|EYA4;nc|ENSG00000112319|O95677-4|EYA4;ENSG00000112319|ENST00000355286|EYA4;nc|ENSG00000064655|O00167-2|EYA2;ENSG00000064655|ENST00000327619|EYA2;ENST00000496494.5_1_8:72111577-72234167:-|nuORF;nc|ENSG00000104313|Q99502-3|EYA1;nc|ENSG00000104313|Q99502-2|EYA1;ENSG00000104313|ENST00000340726|EYA1	nc|ENSG00000112319|O95677-5|EYA4;ENST00000496494.5_1_8:72111577-72234167:-|nuORF	nc|ENSG00000112319|O95677-5|EYA4	MULTI-SECPEP	A375_MHC_IP_R1	1	477.2127990722656	2	476.813128	951.611703	-0.41711	-0.00019888	-0.12272	-5.8513E-05	-0.53983	-0.0002574	476.8130203517153	82.798	1.5191	82.798	82.418	83.937	0					73	29	4	0	0	0	0.10103	1	30206	30206		62.573	28.47	1	48020000			41064	3077;2495	30185	30425	39976	39976					0.13396111724978255
QLIPALAKV	9	Unmodified	_QLIPALAKV_					0	0	0		nc|ENSG00000112319|O95677-5|EYA4;nc|ENSG00000112319|O95677-2|EYA4;nc|ENSG00000112319|O95677-4|EYA4;ENSG00000112319|ENST00000355286|EYA4;nc|ENSG00000064655|O00167-2|EYA2;ENSG00000064655|ENST00000327619|EYA2;ENST00000496494.5_1_8:72111577-72234167:-|nuORF;nc|ENSG00000104313|Q99502-3|EYA1;nc|ENSG00000104313|Q99502-2|EYA1;ENSG00000104313|ENST00000340726|EYA1	nc|ENSG00000112319|O95677-5|EYA4;ENST00000496494.5_1_8:72111577-72234167:-|nuORF	nc|ENSG00000112319|O95677-5|EYA4	MULTI-SECPEP	A375_MHC_IP_R2	2	477.1619567871094	2	476.813128	951.611703	-0.59607	-0.00028421	-0.004671	-2.2272E-06	-0.60074	-0.00028644	476.81307525295966	81.836	1.4189	82.579	82.128	83.547	0.74293					71	27	4	0	0	0	0.083712	1	31082	31082		65.235	23.14	1	49353000			41065	3077;2495	30185	30425	39977	39977					0.13396111724978255
QLIPNVQQL	9	Unmodified	_QLIPNVQQL_					0	0	0		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-SECPEP	A375_MHC_IP_R1	1	527.2083740234375	2	526.808574	1051.60259	-0.4534	-0.00023886	-1.3253	-0.00069819	-1.7787	-0.00093704	526.8084662433816	102.64	0.80814	102.64	102.15	102.96	0					39	15	4	0	0	0	0.047455	1	37638	37638		78.149	12.914	1	2754200			41066	1784	30186	30426	39978	39978					0.07885718368675043
QLIPNVQQL	9	Unmodified	_QLIPNVQQL_					0	0	0		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-MATCH	A375_MHC_IP_R2	2		2	526.808574	1051.60259	-0.40821	-0.00021505	-1.9256	-0.0010144	-2.3338	-0.0012295	527.30859489943	101.78	0.71031	102.54	102.16	102.87	0.76428	-0.047724	-0.00031472	NaN	78.149	37	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5259200			41067	1784	30186	30426							0.07885718368675043
QLIQDKRRRYV	11	Unmodified	_QLIQDKRRRYV_					0	0	0		nc|ENSG00000124786|Q9H1N7-2|SLC35B3	nc|ENSG00000124786|Q9H1N7-2|SLC35B3	nc|ENSG00000124786|Q9H1N7-2|SLC35B3	MSMS	A375_MHC_IP_R2	2	737.936279296875	2	737.933691	1473.85283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.612	1	73.347	72.847	73.847	0.73541								0	0	0	0.16307	1	27557	27557		2.7352	1.4057	1				41068	14578	30187	30427	39979	39979					0.1348569569411211
QLIQVLLRRY	10	Unmodified	_QLIQVLLRRY_					0	0	0			REV__ENSG00000197696|ENST00000360476|NMB	REV__ENSG00000197696|ENST00000360476|NMB	MSMS	A375_MHC_IP_R2	2	651.3915405273438	2	651.406247	1300.79794	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.94	1	113.66	113.16	114.16	0.72458								0	0	0	0.15531	1	42579	42579		3.5965	0.60125	1		+		41069	22308	30188	30428	39980	39980					0.15957308893507616
QLKDQAAQL	9	Unmodified	_QLKDQAAQL_					0	0	0			REV__ENST00000467506.5_1_3:49158779-49159385:-|nuORF	REV__ENST00000467506.5_1_3:49158779-49159385:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	508.2001647949219	2	507.782556	1013.55056	-0.59959	-0.00030446	0.021642	1.0989E-05	-0.57795	-0.00029347	507.7823607048024	28.935	0.4046	28.935	28.745	29.149	0					18	7	3	0	0	0	0.066859	1	8953	8953		57.722	0	1	4598500	+		41070	21117	30189	30429	39981	39981					0.04432554954883017
QLKIAQRRH	9	Unmodified	_QLKIAQRRH_					0	0	0			REV__ENSG00000126856|ENST00000449207|PRDM7;REV__ENSG00000164256|ENST00000296682|PRDM9	REV__ENSG00000164256|ENST00000296682|PRDM9	MULTI-SECPEP	A375_MHC_IP_R1	1	575.739501953125	2	575.351806	1148.68906	-0.44936	-0.00025854	-0.66368	-0.00038185	-1.113	-0.00064039	575.3512265665801	133.02	0.20422	133.02	132.95	133.15	0					5	3	2	0	0	0	0.81254	1	51286	51286		2.0598	0.21551	1	1832000	+		41071	18401;20472	30190	30430	39982	39982					0.12066142713888439
QLKIVDWTVG	10	Unmodified	_QLKIVDWTVG_					0	0	0			REV__nc|ENSG00000164073|Q8NHS3-2|MFSD8	REV__nc|ENSG00000164073|Q8NHS3-2|MFSD8	MULTI-MSMS	A375_MHC_IP_R1	1	579.8155517578125	2	579.829506	1157.64446	-0.3461	-0.00020068	0.12718	7.3744E-05	-0.21892	-0.00012693	579.8294919747821	94.538	0.71185	94.538	94.09	94.802	0					15	13	2	0	0	0	0.70179	1	34741	34741		11.495	1.4208	1	947290	+		41072	20445	30191	30431	39983	39983					0.0719427405715578
QLKIVDWTVG	10	Unmodified	_QLKIVDWTVG_					0	0	0			REV__nc|ENSG00000164073|Q8NHS3-2|MFSD8	REV__nc|ENSG00000164073|Q8NHS3-2|MFSD8	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	579.829506	1157.64446	-0.3461	-0.00020068	0.12718	7.3744E-05	-0.21892	-0.00012693	579.8294919747821	94.538	0.71185	94.538	94.09	94.802	0	0.035256	0.00013751	NaN	11.495	15	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	947290	+		41073	20445	30191	30431							0.0719427405715578
QLKIVDWTVG	10	Unmodified	_QLKIVDWTVG_					0	0	0			REV__nc|ENSG00000164073|Q8NHS3-2|MFSD8	REV__nc|ENSG00000164073|Q8NHS3-2|MFSD8	MULTI-MATCH	A375_MHC_IP_R2	2		2	579.829506	1157.64446	-0.11798	-6.841E-05	-0.8927	-0.00051762	-1.0107	-0.00058603	579.8288894161041	93.722	0.50621	94.467	94.211	94.717	0.74473	-0.035256	-0.0010452	NaN	11.495	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	865050	+		41074	20445	30191	30431							0.0719427405715578
QLKKHGFKL	9	Unmodified	_QLKKHGFKL_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF;HLTF|p.S161L|1|0.26|ENSG00000071794|chr3:149074262-149074262|G/A|missense_variant	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-SECPEP	A375_MHC_IP_R1	1	366.6447448730469	3	366.897593	1097.67095	0.19724	7.2366E-05	-0.12253	-4.4956E-05	0.074707	2.741E-05	366.8974985798758	32.019	0.41133	32.019	31.819	32.231	0					14	7	3	0	0	0	0.69381	1	10363	10363		15.248	15.248	1	2049300			41075	1519	30192	30432	39984	39984					0.1260200773917859
QLKKHGFKL	9	Unmodified	_QLKKHGFKL_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF;HLTF|p.S161L|1|0.26|ENSG00000071794|chr3:149074262-149074262|G/A|missense_variant	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MATCH	A375_MHC_IP_R2	2		3	366.897593	1097.67095	0.096173	3.5286E-05	-0.10128	-3.7158E-05	-0.0051041	-1.8727E-06	366.8975759227383	31.072	0.35606	31.791	31.618	31.974	0.71857	-0.11387	9.2475E-06	NaN	15.248	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2759600			41076	1519	30192	30432							0.1260200773917859
QLKKPLVRP	9	Unmodified	_QLKKPLVRP_					0	0	0			REV__ENSG00000157765|ENST00000382051|SLC34A2	REV__ENSG00000157765|ENST00000382051|SLC34A2	MULTI-MSMS	A375_MHC_IP_R1	1	360.6290283203125	3	360.241359	1077.70225	-0.24734	-8.9103E-05	0.013847	4.9882E-06	-0.23349	-8.4114E-05	360.57601452727044	29.608	1.2002	29.608	29.453	30.653	0					28	23	2	0	0	0	0.41879	1	9490	9490		23.79	6.3471	1	5733000	+		41077	20042	30193	30433	39985	39985					0.16650580773261936
QLKKPLVRP	9	Unmodified	_QLKKPLVRP_					0	0	0			REV__ENSG00000157765|ENST00000382051|SLC34A2	REV__ENSG00000157765|ENST00000382051|SLC34A2	MULTI-SECPEP	A375_MHC_IP_R1	1	360.6290283203125	3	360.241359	1077.70225	-0.24734	-8.9103E-05	0.013847	4.9882E-06	-0.23349	-8.4114E-05	360.57601452727044	29.608	1.2002	29.608	29.453	30.653	0					28	23	2	0	0	0	0.65623	1	9490	9490		23.79	6.3471	1	5733000	+		41078	20042	30193	30433	39986	39986					0.16650580773261936
QLKLRKRSFR	10	Unmodified	_QLKLRKRSFR_					0	0	0			REV__ENST00000494882.1_1_18:13919720-13919822:-|nuORF	REV__ENST00000494882.1_1_18:13919720-13919822:-|nuORF	MSMS	A375_MHC_IP_R2	2	444.6830139160156	3	444.6176	1330.83097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.64	1	136.75	136.25	137.25	0.11134								0	0	0	0.15622	1	53663	53663		0.62683	0	1		+		41079	25442	30194	30434	39987	39987					0.17878935736189305
QLKPLVTLSL	10	Unmodified	_QLKPLVTLSL_					0	0	0			REV__ENST00000525598.1_1_11:118981556-118982340:+|nuORF	REV__ENST00000525598.1_1_11:118981556-118982340:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	371.71539306640625	3	371.241025	1110.70125	-0.30714	-0.00011402	0.98017	0.00036388	0.67304	0.00024986	371.57636791519224	28.902	2.6698	29.6	28.777	31.447	0.69872					185	52	5	0	0	0	0.65751	1	10113	10113		16.566	0.82726	1	149720000	+		41080	21140	30195	30435	39988	39988					0.15032321613716704
QLKPSRQKL	9	Unmodified	_QLKPSRQKL_					0	0	0			REV__nc|ENSG00000111641|P46087-2|NOP2	REV__nc|ENSG00000111641|P46087-2|NOP2	MULTI-SECPEP	A375_MHC_IP_R1	1	366.9645080566406	3	366.564502	1096.67168	0.21343	7.8236E-05	0.14156	5.1892E-05	0.35499	0.00013013	366.5645305291514	33.351	0.30581	33.351	33.19	33.496	0					9	5	2	0	0	0	0.37663	1	10918	10918		36.506	11.515	1	3116100	+		41081	27173	30196	30436	39989	39989					0.1272080238820763
QLKPSRQKL	9	Unmodified	_QLKPSRQKL_					0	0	0			REV__nc|ENSG00000111641|P46087-2|NOP2	REV__nc|ENSG00000111641|P46087-2|NOP2	MULTI-SECPEP	A375_MHC_IP_R2	2	366.6217346191406	3	366.564502	1096.67168	0.074961	2.7478E-05	0.17595	6.4496E-05	0.25091	9.1975E-05	366.5646002223046	32.451	0.35645	33.187	33.01	33.367	0.73692					11	6	3	0	0	0	0.43207	1	11545	11545		27.223	7.8613	1	3437400	+		41082	27173	30196	30436	39990	39990					0.1272080238820763
QLKQENWLS	9	Unmodified	_QLKQENWLS_					0	0	0		ENSG00000177683|ENST00000415914|THAP5;ENST00000313516.5_1_7:108204692-108204749:-|nuORF;nc|ENSG00000177683|Q7Z6K1-2|THAP5	ENSG00000177683|ENST00000415914|THAP5	ENSG00000177683|ENST00000415914|THAP5	MULTI-MSMS	A375_MHC_IP_R2	2	573.7013549804688	2	573.301113	1144.58767	-0.14265	-8.1782E-05	0.2427	0.00013914	0.10005	5.7359E-05	573.3014054395146	48.064	0.45227	48.826	48.532	48.984	0.76128					14	8	2	0	0	0	0.57432	1	18065	18065		16.149	0	1	2020200			41083	8101	30197	30437	39991	39991					0.02116226500652374
QLKQENWLS	9	Unmodified	_QLKQENWLS_					0	0	0		ENSG00000177683|ENST00000415914|THAP5;ENST00000313516.5_1_7:108204692-108204749:-|nuORF;nc|ENSG00000177683|Q7Z6K1-2|THAP5	ENSG00000177683|ENST00000415914|THAP5	ENSG00000177683|ENST00000415914|THAP5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	573.301113	1144.58767	-0.14265	-8.1782E-05	0.2427	0.00013914	0.10005	5.7359E-05	573.3014054395146	48.064	0.45227	48.826	48.532	48.984	0.76128	0.021667	-2.6426E-05	NaN	16.149	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2020200			41084	8101	30197	30437							0.02116226500652374
QLKQNESQFYI	11	Unmodified	_QLKQNESQFYI_					0	0	0			REV__CTAGE15|p.E374Q|1|0.19|ENSG00000271079|chr7:143572937-143572937|G/C|missense_variant	REV__CTAGE15|p.E374Q|1|0.19|ENSG00000271079|chr7:143572937-143572937|G/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	467.1001892089844	3	466.573503	1396.69868	-0.93814	-0.00043771	-0.26878	-0.00012541	-1.2069	-0.00056312	466.9077079043166	60.74	0.40547	61.485	61.263	61.668	0.74503					10	7	2	0	0	0	0.99482	1	22995	22995		6.2344	2.3884	1	1870100	+		41085	15931	30198	30438	39992	39992					0.01619821418103129
QLKRLQQL	8	Unmodified	_QLKRLQQL_					0	0	0			REV__nc|ENSG00000277363|Q9C0H9-2|SRCIN1	REV__nc|ENSG00000277363|Q9C0H9-2|SRCIN1	MULTI-SECPEP	A375_MHC_IP_R2	2	514.2238159179688	2	513.824558	1025.63456	-0.85969	-0.00044173	-0.44873	-0.00023057	-1.3084	-0.0006723	513.8244101773686	51.035	0.30188	51.789	51.615	51.917	0.75406					9	5	2	0	0	0	0.94479	1	19229	19229		8.5933	0	1	2605900	+		41086	22971	30199	30439	39993	39993					0.12277130842471706
QLKRRRRRKK	10	Unmodified	_QLKRRRRRKK_					0	0	0		ENST00000474534.1_1_9:131798902-131809484:+|nuORF;nc|ENSG00000148343|Q7L4E1-2|MIGA2;nc|ENSG00000148343|Q7L4E1-3|MIGA2;ENSG00000148343|ENST00000684074|MIGA2	ENST00000474534.1_1_9:131798902-131809484:+|nuORF	ENST00000474534.1_1_9:131798902-131809484:+|nuORF	MSMS	A375_MHC_IP_R2	2	712.822509765625	2	712.979102	1423.94365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.77	1	122.22	121.72	122.72	0.44488								0	0	0	0.15629	1	46617	46617		0.40072	0.050084	1				41087	5735	30200	30440	39994	39994					0.24863629252899955
QLKRVNLEL	9	Unmodified	_QLKRVNLEL_					0	0	0			REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL	REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL	MULTI-SECPEP	A375_MHC_IP_R1	1	556.1785888671875	2	556.842948	1111.67134	-0.69861	-0.00038902	0.98325	0.00054751	0.28464	0.0001585	557.3454229205456	80.718	0.25374	80.718	80.592	80.846	0					6	4	2	0	0	0	0.75466	1	29526	29526		7.9102	0	1	572190	+		41088	18069	30201	30441	39995	39995					0.11997382668369028
QLKWWQWWIWW	11	Unmodified	_QLKWWQWWIWW_					0	0	0			REV__chr12:54282841-54283827|472|22.72|0.0|21.12|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54282841-54283827|472|22.72|0.0|21.12|+|1|HNRNPA1,HNRNPA1|1	MULTI-SECPEP	A375_MHC_IP_R2	2	582.1788330078125	3	582.629506	1744.86669	-0.29628	-0.00017262	-1.6775	-0.00097734	-1.9737	-0.00115	582.9624797529316	69.548	0.30464	70.282	70.081	70.386	0.73421					9	5	2	0	0	0	1.0015	1	26317	26317		0.08335	0.08335	1	1752600	+		41089	15693	30202	30442	39996	39996					0.024049731932109353
QLKWWRWFQKR	11	Unmodified	_QLKWWRWFQKR_					0	0	0			REV__chr12:54282932-54283812|472|118.33|0.0|23.5|+|1|HNRNPA1,HNRNPA1|2	REV__chr12:54282932-54283812|472|118.33|0.0|23.5|+|1|HNRNPA1,HNRNPA1|2	MULTI-SECPEP	A375_MHC_IP_R2	2	831.8312377929688	2	831.462419	1660.91028	-0.75536	-0.00062805	-3.8751	-0.003222	-4.6304	-0.00385	831.9620341287965	126.92	0.15181	127.18	127.06	127.21	0.26593					4	2	2	0	0	0	1.0014	1	49690	49690		0.30703	0.30703	1	3756100	+		41090	15694	30203	30443	39997	39997					0.10626582690315445
QLLAANTQ	8	Unmodified	_QLLAANTQ_					0	0	0			REV__ENSG00000198646|ENST00000359003|NCOA6	REV__ENSG00000198646|ENST00000359003|NCOA6	MULTI-MSMS	A375_MHC_IP_R2	2	431.2879943847656	2	429.737617	857.460681	-0.41487	-0.00017828	0.042318	1.8186E-05	-0.37255	-0.0001601	429.73764068394047	35.595	1.7789	36.358	35.98	37.759	0.76338					98	34	5	0	0	0	0.77624	1	13138	13138		8.5933	0	1	332710000	+		41091	22391	30204	30444	39998	39998					0.026249253463333844
QLLCPFHCV	9	Unmodified	_QLLCPFHCV_					0	0	0			REV__nc|ENSG00000158089|Q96FL9-3|GALNT14	REV__nc|ENSG00000158089|Q96FL9-3|GALNT14	MULTI-SECPEP	A375_MHC_IP_R1	1	530.2132568359375	2	530.259348	1058.50414	-0.66135	-0.00035068	-0.097237	-5.1561E-05	-0.75858	-0.00040225	530.2594782379033	76.929	0.51131	76.929	76.673	77.184	0					11	8	2	0	0	0	0.69504	1	28144	28144		12.532	0	1	1202700	+		41092	27310	30205	30445	39999	39999					-0.022769244724031523
QLLDFERTL	9	Unmodified	_QLLDFERTL_					0	0	0		ENSG00000139318|ENST00000279488|DUSP6;nc|ENSG00000139318|Q16828-2|DUSP6;nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7	ENSG00000139318|ENST00000279488|DUSP6;nc|ENSG00000164086|Q16829-2|DUSP7	ENSG00000139318|ENST00000279488|DUSP6	MULTI-SECPEP	A375_MHC_IP_R1	1	568.211669921875	2	567.811313	1133.60807	-0.30983	-0.00017592	0.10882	6.1788E-05	-0.20101	-0.00011414	567.8114026015651	96.443	1.472	96.443	95.917	97.389	0					77	28	4	0	0	0	0.011031	1	35377	35377		128.93	0	1	37949000			41093	5068;6775	30206	30446	40000	40000					0.04661397160475644
QLLDFERTL	9	Unmodified	_QLLDFERTL_					0	0	0		ENSG00000139318|ENST00000279488|DUSP6;nc|ENSG00000139318|Q16828-2|DUSP6;nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7	ENSG00000139318|ENST00000279488|DUSP6;nc|ENSG00000164086|Q16829-2|DUSP7	ENSG00000139318|ENST00000279488|DUSP6	MULTI-SECPEP	A375_MHC_IP_R2	2	568.2109375	2	567.811313	1133.60807	-0.23865	-0.00013551	-0.089792	-5.0985E-05	-0.32844	-0.00018649	567.8112611161481	95.571	2.9463	96.322	95.633	98.579	0.75045					100	57	4	0	0	0	0.01083	1	36266	36266		155.95	0	1	40416000			41094	5068;6775	30206	30446	40001	40001					0.04661397160475644
QLLDFSQKL	9	Unmodified	_QLLDFSQKL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	A375_MHC_IP_R1	1	545.7032470703125	2	546.308406	1090.60226	-0.40725	-0.00022248	-0.070825	-3.8692E-05	-0.47807	-0.00026117	546.3082489083031	88.689	0.45913	88.689	88.46	88.919	0					13	8	2	0	0	0	0.47206	1	32558	32558		41.956	14.327	1	3270700			41095	1768	30207	30447	40002	40002					0.06058298648804339
QLLDQIWRT	9	Unmodified	_QLLDQIWRT_					0	0	0		CPSF2|p.L682Vfs*4|1|0.2|ENSG00000165934|chr14:92159204-92159205|TC/-|frameshift_variant;ENSG00000165934|ENST00000298875|CPSF2	CPSF2|p.L682Vfs*4|1|0.2|ENSG00000165934|chr14:92159204-92159205|TC/-|frameshift_variant	CPSF2|p.L682Vfs*4|1|0.2|ENSG00000165934|chr14:92159204-92159205|TC/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	587.224365234375	2	586.824755	1171.63496	-0.18211	-0.00010686	0.36133	0.00021204	0.17922	0.00010517	586.8247102252747	97.292	0.91127	97.292	96.883	97.794	0					23	17	2	0	0	0	0.023846	1	35782	35782		94.909	49.209	1	1932200			41096	651	30208	30448	40003	40003					0.05600505771644748
QLLDQIWRT	9	Unmodified	_QLLDQIWRT_					0	0	0		CPSF2|p.L682Vfs*4|1|0.2|ENSG00000165934|chr14:92159204-92159205|TC/-|frameshift_variant;ENSG00000165934|ENST00000298875|CPSF2	CPSF2|p.L682Vfs*4|1|0.2|ENSG00000165934|chr14:92159204-92159205|TC/-|frameshift_variant	CPSF2|p.L682Vfs*4|1|0.2|ENSG00000165934|chr14:92159204-92159205|TC/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	587.2245483398438	2	586.824755	1171.63496	-0.65863	-0.0003865	0.72954	0.00042811	0.070904	4.1608E-05	587.3269259427202	96.588	0.91048	97.343	96.962	97.873	0.75586					25	17	2	0	0	0	0.020621	1	36664	36664		108.26	68.312	1	2226800			41097	651	30208	30448	40004	40004					0.05600505771644748
QLLDQVEQI	9	Unmodified	_QLLDQVEQI_					0	0	0		nc|ENSG00000158604|Q7Z7H5-3|TMED4;nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	MULTI-SECPEP	A375_MHC_IP_R1	1	543.6956787109375	2	543.295496	1084.57644	-0.48608	-0.00026408	0.032997	1.7927E-05	-0.45308	-0.00024616	543.295494046308	97.04	0.91023	97.04	96.68	97.59	0					24	15	2	0	0	0	0.008833	1	35612	35612		147.06	20.493	1	5838500			41098	6317	30209	30449	40005	40005					0.03753404406529626
QLLDTIRSL	9	Unmodified	_QLLDTIRSL_					0	0	0		nc|ENSG00000213397|Q99871-2|HAUS7;nc|ENSG00000213397|Q99871-3|HAUS7;ENSG00000213397|ENST00000370211|HAUS7;ENST00000464993.1_1_X:152722593-152735946:-|nuORF	nc|ENSG00000213397|Q99871-2|HAUS7	nc|ENSG00000213397|Q99871-2|HAUS7	MULTI-MSMS	A375_MHC_IP_R1	1	529.827392578125	2	529.813856	1057.61316	-0.61392	-0.00032526	-0.28062	-0.00014868	-0.89454	-0.00047394	529.8136935378733	77.159	0.81384	77.159	76.622	77.436	0					22	15	2	0	0	0	0.4875	1	28214	28214		20.415	1.1575	1	5570000			41099	14894	30210	30450	40006	40006					0.0866570102307378
QLLEKVIEL	9	Unmodified	_QLLEKVIEL_					0	0	0		nc|ENSG00000093144|Q9NTX5-4|ECHDC1;ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1;nc|ENSG00000093144|Q9NTX5-3|ECHDC1;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1	nc|ENSG00000093144|Q9NTX5-4|ECHDC1	nc|ENSG00000093144|Q9NTX5-4|ECHDC1	MULTI-MSMS	A375_MHC_IP_R2	2	543.2340698242188	2	542.834257	1083.65396	-0.98086	-0.00053244	-3.8745	-0.0021032	-4.8554	-0.0026357	542.8342085972018	96.84	1.0135	97.596	97.268	98.281	0.75586					82	19	6	0	0	0	7.7695E-07	1	36718	36718		218.2	71.139	1	44474000			41100	2020	30211	30451	40007	40007					0.11548042342701592
QLLETLNQL	9	Unmodified	_QLLETLNQL_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	A375_MHC_IP_R1	1	536.7059326171875	2	536.305864	1070.59717	-0.54889	-0.00029438	0.17726	9.5065E-05	-0.37164	-0.00019931	536.3059237027148	110.35	0.66047	110.35	110.04	110.7	0					21	12	2	0	0	0	0.0098183	1	40452	40452		114.65	25.248	1	2460200			41101	9483	30212	30452	40008	40008					0.06469994786198185
QLLEWKTQL	9	Unmodified	_QLLEWKTQL_					0	0	0			REV__CON__P35908;REV__CON__Q6IFZ6;REV__CON__Q9R0H5	REV__CON__P35908	MULTI-SECPEP	A375_MHC_IP_R1	1	580.2291870117188	2	579.829506	1157.64446	-0.1737	-0.00010072	-0.31827	-0.00018454	-0.49197	-0.00028526	579.829229726761	98.572	0.66231	98.572	98.151	98.813	0					21	12	3	0	0	0	0.3213	1	36224	36224		37.974	6.7057	1	2115900	+	+	41102	15865;15892;15904	30213	30453	40009	40009					0.07194274057178518
QLLGSAHEV	9	Unmodified	_QLLGSAHEV_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-SECPEP	A375_MHC_IP_R1	1	477.6561584472656	2	477.256174	952.497795	-0.40414	-0.00019288	0.34892	0.00016652	-0.055224	-2.6356E-05	477.2563253300783	38.602	0.96886	38.602	38.371	39.34	0					48	18	5	0	0	0	0.04395	1	13091	13091		92.491	42.558	1	73014000			41103	9183	30214	30454	40010	40010					0.019645968920826817
QLLGSAHEV	9	Unmodified	_QLLGSAHEV_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-SECPEP	A375_MHC_IP_R2	2	477.65582275390625	2	477.256174	952.497795	-0.72843	-0.00034765	0.096925	4.6258E-05	-0.6315	-0.00030139	477.25620023287235	37.683	0.87157	38.457	38.227	39.098	0.77451					43	16	4	0	0	0	0.04395	1	13790	13790		92.491	42.558	1	67658000			41104	9183	30214	30454	40011	40011					0.019645968920826817
QLLGSRPL	8	Unmodified	_QLLGSRPL_					0	0	0			REV__nc|ENSG00000269343|E7ETH6|ZNF587B	REV__nc|ENSG00000269343|E7ETH6|ZNF587B	MULTI-MSMS	A375_MHC_IP_R1	1	442.671630859375	2	442.271627	882.528701	-0.10693	-4.729E-05	-0.15694	-6.941E-05	-0.26386	-0.0001167	442.2715744933929	60.699	0.55992	60.699	60.464	61.024	0					25	10	3	0	0	0	0.57209	1	21866	21866		46.021	2.1627	1	3999400	+		41105	22521	30215	30455	40012	40012					0.08273794996978268
QLLHKKGSL	9	Unmodified	_QLLHKKGSL_					0	0	0			REV__ENSG00000072840|ENST00000264956|EVC	REV__ENSG00000072840|ENST00000264956|EVC	MSMS	A375_MHC_IP_R1	1	512.3436889648438	2	512.319109	1022.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.349	1	81.349	80.849	81.849	0								0	0	0	0.13673	1	29726	29726		30.637	8.8899	1		+		41106	16613	30216	30456	40013	40013					0.11325728468182206
QLLHPWLEPL	10	Unmodified	_QLLHPWLEPL_					0	0	0			REV__ENST00000508797.1_1_5:179035408-179036813:+|nuORF	REV__ENST00000508797.1_1_5:179035408-179036813:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	622.7465209960938	2	623.353148	1244.69174	-0.72254	-0.0004504	-1.2575	-0.00078386	-1.98	-0.0012343	623.8534143004833	131.19	0.50571	131.19	130.97	131.48	0					11	9	2	0	0	0	0.93961	1	50613	50613		6.2058	3.2105	1	1818700	+		41107	25586	30217	30457	40014	40014					0.07918553328204325
QLLHRRRRWRQ	11	Unmodified	_QLLHRRRRWRQ_					0	0	0			REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF	REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF	MSMS	A375_MHC_IP_R2	2	802.88818359375	2	802.97709	1603.93963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.92	1	111.66	111.16	112.16	0.73692								0	0	0	0.16302	1	41833	41833		2.9952	1.6657	1		+		41108	24072	30218	30458	40015	40015					0.16181539759190855
QLLKGDFRL	9	Unmodified	_QLLKGDFRL_					0	0	0		ENSG00000185070|ENST00000330753|FLRT2	ENSG00000185070|ENST00000330753|FLRT2	ENSG00000185070|ENST00000330753|FLRT2	MULTI-SECPEP	A375_MHC_IP_R2	2	364.2937927246094	3	363.885353	1088.63423	0.033127	1.2055E-05	0.54235	0.00019735	0.57548	0.00020941	363.8853526735206	64.369	0.2542	65.109	64.954	65.208	0.74023					7	4	2	0	0	0	0.67539	1	24387	24387		15.739	7.5831	1	874430			41109	8638	30219	30459	40016	40016					0.09345711122614375
QLLKREGVV	9	Unmodified	_QLLKREGVV_					0	0	0			REV__ENST00000293968.11_1_16:2487229-2489355:+|nuORF	REV__ENST00000293968.11_1_16:2487229-2489355:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	521.7241821289062	2	521.324391	1040.63423	-0.45259	-0.00023594	-0.80189	-0.00041804	-1.2545	-0.00065399	521.3239338471874	86.065	0.45914	86.798	86.488	86.948	0.733					12	8	2	0	0	0	0.74412	1	32771	32771		1.3295	0	1	1557900	+		41110	23375	30220	30460	40017	40017					0.11553711122610366
QLLLKGFTSL	10	Unmodified	_QLLLKGFTSL_					0	0	0		ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MULTI-MSMS	A375_MHC_IP_R2	2	560.7431640625	2	560.342249	1118.66995	-0.45809	-0.00025669	1.2906	0.00072319	0.83253	0.0004665	560.3435842076011	142.2	0.71042	142.23	141.92	142.64	0.030731					19	13	2	0	0	0	0.72014	1	55578	55578		3.2813	0	1	5490700			41111	1572	30221	30461	40018	40018					0.11535748579603933
QLLLLQLL	8	Unmodified	_QLLLLQLL_					0	0	0			REV__ENST00000484016.1_1_12:56226082-56226935:+|nuORF	REV__ENST00000484016.1_1_12:56226082-56226935:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	477.7231140136719	2	477.323328	952.632104	-0.55276	-0.00026384	-0.13426	-6.4085E-05	-0.68702	-0.00032793	477.3232147635792	105.91	0.71408	106.67	106.48	107.19	0.75977					21	13	2	0	0	0	0.68328	1	40070	40070		39.957	0	1	1541100	+		41112	25294	30222	30462	40019	40019					0.15389282384796843
QLLLPKVK	8	Unmodified	_QLLLPKVK_					0	0	0			REV__ENSG00000044090|ENST00000265348|CUL7	REV__ENSG00000044090|ENST00000265348|CUL7	MULTI-SECPEP	A375_MHC_IP_R1	1	470.22320556640625	2	469.823495	937.632438	-0.55324	-0.00025993	0.035659	1.6753E-05	-0.51758	-0.00024317	469.82338813370006	84.622	0.46211	84.622	84.442	84.904	0					12	8	2	0	0	0	0.84748	1	31039	31039		28.487	1.6032	1	1326700	+		41113	16352	30223	30463	40020	40020					0.16112702104658183
QLLLREHYQK	10	Unmodified	_QLLLREHYQK_					0	0	0		nc|ENSG00000173083|Q9Y251-4|HPSE;nc|ENSG00000173083|Q9Y251-3|HPSE;nc|ENSG00000173083|Q9Y251-2|HPSE;ENSG00000173083|ENST00000311412|HPSE	nc|ENSG00000173083|Q9Y251-4|HPSE	nc|ENSG00000173083|Q9Y251-4|HPSE	MSMS	A375_MHC_IP_R2	2	664.3995361328125	2	664.377686	1326.74082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.554	1	86.29	85.79	86.79	0.73601								0	0	0	0.15265	1	32526	32526		12.241	2.1667	1				41114	7766	30224	30464	40021	40021					0.09051841617110767
QLLNCLHVV	9	Carbamidomethyl (C)	_QLLNC(Carbamidomethyl (C))LHVV_	QLLNC(1)LHVV		QLLNC(64)LHVV		0	1	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	A375_MHC_IP_R1	1	548.7028198242188	2	548.302601	1094.59065	-0.70319	-0.00038556	-0.079189	-4.3419E-05	-0.78238	-0.00042898	548.3025974588484	80.519	0.40458	80.519	80.34	80.744	0					17	7	3	0	0	0	0.050875	1	29411	29411		64.236	44.874	1	3441000			41115	2241	30225	30465	40022	40022	13				0.04713778353811904
QLLNCLHVV	9	Carbamidomethyl (C)	_QLLNC(Carbamidomethyl (C))LHVV_	QLLNC(1)LHVV		QLLNC(85)LHVV		0	1	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	A375_MHC_IP_R2	2	548.1578979492188	2	548.302601	1094.59065	-0.70327	-0.00038561	-0.58275	-0.00031952	-1.286	-0.00070513	548.3021140237339	79.599	0.40788	80.344	80.149	80.556	0.74473					11	7	2	0	0	0	0.050875	1	30212	30212		85.357	44.908	1	3645600			41116	2241	30225	30465	40023	40023	13				0.04713778353811904
QLLPGIRGI	9	Unmodified	_QLLPGIRGI_					0	0	0		ENST00000480653.5_1_20:32878355-32891076:-|nuORF;nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	484.2080993652344	2	483.808377	965.6022	-0.47501	-0.00022981	0.016086	7.7828E-06	-0.45892	-0.00022203	483.80832047424485	87.104	0.55692	87.837	87.56	88.117	0.733					17	10	2	0	0	0	0.13797	1	33139	33139		43.858	9.7559	1	2078700			41117	2296	30226	30466	40024	40024					0.11802343439467222
QLLPVRALN	9	Unmodified	_QLLPVRALN_					0	0	0		ENSG00000152620|ENST00000381937|NADK2;nc|ENSG00000152620|Q4G0N4-2|NADK2;nc|ENSG00000152620|Q4G0N4-3|NADK2	ENSG00000152620|ENST00000381937|NADK2	ENSG00000152620|ENST00000381937|NADK2	MULTI-MSMS	A375_MHC_IP_R2	2	512.343505859375	2	512.319109	1022.62366	-0.77707	-0.00039811	-1.531	-0.00078438	-2.3081	-0.0011825	512.3179838589181	80.349	0.35473	81.093	80.961	81.315	0.74474					8	6	2	0	0	0	0.60101	1	30589	30589		14.838	1.7958	1	1360000			41118	5976	30227	30467	40025	40025					0.11325728468170837
QLLQNQRKI	9	Unmodified	_QLLQNQRKI_					0	0	0		ENSG00000100354|ENST00000454349|TNRC6B;nc|ENSG00000100354|Q9UPQ9-1|TNRC6B;nc|ENSG00000100354|Q9UPQ9-2|TNRC6B;ENST00000467658.1_1_22:40696928-40697447:+|nuORF	ENSG00000100354|ENST00000454349|TNRC6B	ENSG00000100354|ENST00000454349|TNRC6B	MULTI-SECPEP	A375_MHC_IP_R1	1	381.6336364746094	3	380.899773	1139.67749	-0.06227	-2.3719E-05	-1.0737	-0.00040896	-1.1359	-0.00043268	381.23401784178964	29.632	0.19256	29.632	29.555	29.748	0					5	3	2	0	0	0	0.78753	1	9345	9345		2.4985	0.59211	1	5842100			41119	2167	30228	30468	40026	40026					0.11323900899878936
QLLQQQAC	8	Unmodified	_QLLQQQAC_					0	0	0		nc|ENSG00000100503|Q8N4C6-10|NIN;ENSG00000100503|ENST00000530997|NIN;ENST00000476352.5_1_14:51190183-51197646:-|nuORF;nc|ENSG00000100503|Q8N4C6-4|NIN;nc|ENSG00000100503|Q8N4C6-9|NIN;nc|ENSG00000100503|Q8N4C6-2|NIN;nc|ENSG00000100503|Q8N4C6|NIN;nc|ENSG00000100503|Q8N4C6-5|NIN;ENST00000485005.1_1_14:51194409-51197646:-|nuORF;nc|ENSG00000100503|Q8N4C6-11|NIN	nc|ENSG00000100503|Q8N4C6-10|NIN	nc|ENSG00000100503|Q8N4C6-10|NIN	MULTI-MSMS	A375_MHC_IP_R2	2	931.3642578125	1	931.466577	930.459301	-0.16157	-0.0001505	1.775	0.0016534	1.6134	0.0015029	931.4698163310471	118.09	0.45477	118.7	118.54	119	0.60909					9	8	2	0	0	0	0.77515	1	44940	44940		12.532	0.89125	1	10074000			41120	2186	30229	30469	40027	40027					-0.008710320140835393
QLLRPGSL	8	Unmodified	_QLLRPGSL_					0	0	0		ENST00000466496.5_1_1:149902724-149908701:-|nuORF;nc|ENSG00000014914|A4FU01-5|MTMR11;ENST00000482343.5_1_1:149902724-149908540:-|nuORF;ENST00000479272.1_1_1:149906082-149907243:-|nuORF;nc|ENSG00000014914|A4FU01-3|MTMR11;nc|ENSG00000014914|A4FU01-2|MTMR11;ENST00000492824.5_1_1:149905714-149908540:-|nuORF;nc|ENSG00000014914|A4FU01-6|MTMR11;nc|ENSG00000014914|A4FU01-4|MTMR11;ENSG00000014914|ENST00000439741|MTMR11	ENST00000466496.5_1_1:149902724-149908701:-|nuORF	ENST00000466496.5_1_1:149902724-149908701:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	442.671142578125	2	442.271627	882.528701	-0.71889	-0.00031794	0.24719	0.00010933	-0.4717	-0.00020862	442.27168239914766	59.763	0.60552	60.51	60.148	60.753	0.74714					20	11	2	0	0	0	0.27045	1	22606	22606		61.357	1.2836	1	3640900			41121	12262	30230	30470	40028	40028					0.08273794997001005
QLLRPGSL	8	Unmodified	_QLLRPGSL_					0	0	0		ENST00000466496.5_1_1:149902724-149908701:-|nuORF;nc|ENSG00000014914|A4FU01-5|MTMR11;ENST00000482343.5_1_1:149902724-149908540:-|nuORF;ENST00000479272.1_1_1:149906082-149907243:-|nuORF;nc|ENSG00000014914|A4FU01-3|MTMR11;nc|ENSG00000014914|A4FU01-2|MTMR11;ENST00000492824.5_1_1:149905714-149908540:-|nuORF;nc|ENSG00000014914|A4FU01-6|MTMR11;nc|ENSG00000014914|A4FU01-4|MTMR11;ENSG00000014914|ENST00000439741|MTMR11	ENST00000466496.5_1_1:149902724-149908701:-|nuORF	ENST00000466496.5_1_1:149902724-149908701:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	442.271627	882.528701	-0.10693	-4.729E-05	-0.15694	-6.941E-05	-0.26386	-0.0001167	442.2715744933929	60.699	0.55992	60.699	60.464	61.024	0	0.094293	-0.00011425	NaN	61.357	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3999400			41122	12262	30230	30470							0.08273794997001005
QLLRVGREG	9	Unmodified	_QLLRVGREG_					0	0	0		ENST00000466132.5_1_6:31948575-31948888:+|nuORF	ENST00000466132.5_1_6:31948575-31948888:+|nuORF	ENST00000466132.5_1_6:31948575-31948888:+|nuORF	MSMS	A375_MHC_IP_R2	2	514.70361328125	2	514.30399	1026.59343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.793	1	20.404	19.904	20.904	0.61029								0	0	0	0.15486	1	6109	6109		7.9102	0	1				41123	12256	30231	30471	40029	40029					0.08119369803011978
QLLSKHLRV	9	Unmodified	_QLLSKHLRV_					0	0	0		ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	MULTI-SECPEP	A375_MHC_IP_R2	2	365.6047668457031	3	365.232864	1092.67676	-0.038746	-1.4151E-05	0.032898	1.2015E-05	-0.005849	-2.1362E-06	365.23287722379126	32.807	0.35534	33.544	33.367	33.722	0.73692					9	6	2	0	0	0	0.775	1	11648	11648		4.1895	1.1172	1	1135500			41124	8401	30232	30472	40030	40030					0.13413106250845885
QLLSYLHATL	10	Unmodified	_QLLSYLHATL_					0	0	0			REV__nc|ENSG00000132254|P53365-2|ARFIP2	REV__nc|ENSG00000132254|P53365-2|ARFIP2	MULTI-MSMS	A375_MHC_IP_R2	2	580.3963623046875	2	579.829506	1157.64446	-0.23667	-0.00013723	0.71867	0.0004167	0.48199	0.00027947	579.8292774473289	73.661	0.61261	74.396	74.091	74.704	0.73541					19	11	2	0	0	0	0.62155	1	28018	28018		19.257	4.4187	1	1327700	+		41125	18642	30233	30473	40031	40031					0.07194274057178518
QLLVKKPL	8	Unmodified	_QLLVKKPL_					0	0	0			REV__ENST00000422625.5_1_3:190231944-190272450:+|nuORF	REV__ENST00000422625.5_1_3:190231944-190272450:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	470.1686706542969	2	469.823495	937.632438	-0.55556	-0.00026102	-0.53108	-0.00024951	-1.0866	-0.00051053	469.82332573467215	83.631	0.40753	84.371	84.152	84.559	0.73962					10	7	2	0	0	0	0.90224	1	31843	31843		19.439	0	1	1005500	+		41126	24608	30234	30474	40032	40032					0.16112702104646814
QLLYWELRREQ	11	Unmodified	_QLLYWELRREQ_					0	0	0		ENSG00000184675|ENST00000374869|AMER1;nc|ENSG00000184675|Q5JTC6-2|AMER1	ENSG00000184675|ENST00000374869|AMER1	ENSG00000184675|ENST00000374869|AMER1	MULTI-SECPEP	A375_MHC_IP_R1	1	512.3436889648438	3	511.94393	1532.80996	-0.49561	-0.00025372	0.14514	7.4305E-05	-0.35047	-0.00017942	512.2785936256108	81.305	0.50684	81.305	81.049	81.556	0					16	9	2	0	0	0	0.99332	1	29726	29726		7.0371	2.3212	1	3064900			41127	8602	30235	30475	40033	40033					0.06486880846000531
QLMPLPVKV	9	Unmodified	_QLMPLPVKV_					0	0	0		ENSG00000138646|ENST00000264350|HERC5	ENSG00000138646|ENST00000264350|HERC5	ENSG00000138646|ENST00000264350|HERC5	MULTI-SECPEP	A375_MHC_IP_R2	2	512.653076171875	2	512.814813	1023.61507	-0.67257	-0.00034491	0.4229	0.00021687	-0.24967	-0.00012804	513.3167372680365	92.147	0.35336	92.886	92.684	93.038	0.73902					8	6	2	0	0	0	0.60917	1	35077	35077		13.906	1.3745	1	443520			41128	5016	30236	30476	40034	40034					0.10421038507331559
QLMWKTRLKYL	11	Unmodified	_QLMWKTRLKYL_					0	0	0			REV__ENSG00000203909|ENST00000370370|DPPA5	REV__ENSG00000203909|ENST00000370370|DPPA5	MSMS	A375_MHC_IP_R1	1	740.248046875	2	740.428864	1478.84318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.307	1	91.307	90.807	91.807	0								0	0	0	0.16339	1	33550	33550		1.0715	0.72083	1		+		41129	22476	30237	30477	40035	40035					0.12290791364375764
QLNDAENKY	9	Unmodified	_QLNDAENKY_					0	0	0		ENST00000513565.6_1_5:122694091-122724023:-|nuORF;nc|ENSG00000168944|Q8N960-2|CEP120;ENSG00000168944|ENST00000306467|CEP120	ENST00000513565.6_1_5:122694091-122724023:-|nuORF	ENST00000513565.6_1_5:122694091-122724023:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	548.2000122070312	2	547.759278	1093.504	-0.67567	-0.0003701	-0.30946	-0.00016951	-0.98513	-0.00053961	547.7589535512259	80.373	0.55631	80.373	80.136	80.693	0					22	10	3	0	0	0	0.64808	2	29404	29404;29411		11.64	11.64	1	4146900			41130	7364	30238	30478	40036;40037	40036					-0.03900929667042874
QLNDAENKY	9	Unmodified	_QLNDAENKY_					0	0	0		ENST00000513565.6_1_5:122694091-122724023:-|nuORF;nc|ENSG00000168944|Q8N960-2|CEP120;ENSG00000168944|ENST00000306467|CEP120	ENST00000513565.6_1_5:122694091-122724023:-|nuORF	ENST00000513565.6_1_5:122694091-122724023:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	548.7015380859375	2	547.759278	1093.504	-0.70758	-0.00038758	-0.67131	-0.00036772	-1.3789	-0.0007553	547.7583665370805	79.704	0.66089	80.449	79.997	80.657	0.74473					32	12	4	0	0	0	0.64808	1	30224	30224		11.64	1.4569	1	3787800			41131	7364	30238	30478	40038	40038					-0.03900929667042874
QLNDTLDAI	9	Unmodified	_QLNDTLDAI_					0	0	0		ENSG00000157315|ENST00000288025|TMED6	ENSG00000157315|ENST00000288025|TMED6	ENSG00000157315|ENST00000288025|TMED6	MULTI-SECPEP	A375_MHC_IP_R2	2	501.1637878417969	2	501.758746	1001.50294	-0.9182	-0.00046072	-0.087303	-4.3805E-05	-1.0055	-0.00050452	501.7586839140596	38.733	0.45933	39.508	39.3	39.76	0.77451					13	8	2	0	0	0	0.63327	1	14322	14322		18.146	0	1	1846300			41132	6236	30239	30479	40039	40039					0.002248559640406711
QLNDYEQLL	9	Unmodified	_QLNDYEQLL_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MSMS	A375_MHC_IP_R1	1	568.7102661132812	2	568.285128	1134.5557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.06	1	122.06	121.56	122.56	0								0	0	0	0.15468	1	45376	45376		13.906	0	1				41133	3145	30240	30480	40040	40040					-0.006191859731416116
QLNEKVAQL	9	Unmodified	_QLNEKVAQL_					0	0	0		ENST00000419457.1_1_13:29296686-29297403:-|nuORF;nc|ENSG00000001630|Q16850-2|CYP51A1;ENSG00000001630|ENST00000003100|CYP51A1	ENST00000419457.1_1_13:29296686-29297403:-|nuORF	ENST00000419457.1_1_13:29296686-29297403:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	522.1980590820312	2	521.798206	1041.58186	-0.76782	-0.00040065	0.24612	0.00012842	-0.5217	-0.00027222	521.7983159219126	41.188	0.55745	41.188	40.963	41.521	0					27	10	4	0	0	0	0.087712	1	14208	14208		75.761	17.082	1	17026000			41134	850	30241	30481	40041	40041					0.0627312798899311
QLNEKVAQL	9	Unmodified	_QLNEKVAQL_					0	0	0		ENST00000419457.1_1_13:29296686-29297403:-|nuORF;nc|ENSG00000001630|Q16850-2|CYP51A1;ENSG00000001630|ENST00000003100|CYP51A1	ENST00000419457.1_1_13:29296686-29297403:-|nuORF	ENST00000419457.1_1_13:29296686-29297403:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	522.1975708007812	2	521.798206	1041.58186	-0.67324	-0.0003513	-0.13302	-6.941E-05	-0.80627	-0.00042071	521.7981317448663	40.385	0.50924	41.16	40.98	41.489	0.77451					24	9	4	0	0	0	0.056023	1	14942	14942		85.642	20.406	1	15281000			41135	850	30241	30481	40042	40042					0.0627312798899311
QLNEQLVTL	9	Unmodified	_QLNEQLVTL_					0	0	0		ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENSG00000134987|ENST00000513710|WDR36	ENSG00000134987|ENST00000513710|WDR36	MULTI-MSMS	A375_MHC_IP_R1	1	529.7230834960938	2	529.298039	1056.58152	-0.64092	-0.00033924	0.53535	0.00028336	-0.10558	-5.5881E-05	529.2982138215525	95.304	0.5563	95.304	95.058	95.614	0					15	10	2	0	0	0	0.0090323	1	35065	35065		99.799	27.877	1	1780900			41136	4633	30242	30482	40043	40043					0.055497082691545074
QLNEQLVTL	9	Unmodified	_QLNEQLVTL_					0	0	0		ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENSG00000134987|ENST00000513710|WDR36	ENSG00000134987|ENST00000513710|WDR36	MULTI-MSMS	A375_MHC_IP_R2	2	529.7236328125	2	529.298039	1056.58152	-0.33171	-0.00017558	0.20083	0.0001063	-0.13088	-6.9275E-05	529.2981256856489	94.56	0.40565	95.305	95.122	95.528	0.74474					16	7	3	0	0	0	0.030038	1	35897	35897		74.929	24.996	1	1278500			41137	4633	30242	30482	40044	40044					0.055497082691545074
QLNEQVHSL	9	Unmodified	_QLNEQVHSL_					0	0	0		nc|ENSG00000166974|Q15555-4|MAPRE2;nc|ENSG00000166974|Q15555-5|MAPRE2;nc|ENSG00000166974|Q15555-3|MAPRE2;ENSG00000166974|ENST00000300249|MAPRE2	nc|ENSG00000166974|Q15555-4|MAPRE2	nc|ENSG00000166974|Q15555-4|MAPRE2	MULTI-MSMS	A375_MHC_IP_R1	1	534.677490234375	2	534.277638	1066.54072	-0.59978	-0.00032045	-0.20455	-0.00010929	-0.80433	-0.00042974	534.2774904592759	35.056	0.50861	35.056	34.81	35.319	0					15	9	2	0	0	0	0.030891	1	11623	11623		74.2	28.46	1	5802500			41138	7145	30243	30483	40045	40045					0.010113669495240174
QLNIQKIAV	9	Unmodified	_QLNIQKIAV_					0	0	0			REV__ENSG00000180370|ENST00000327134|PAK2	REV__ENSG00000180370|ENST00000327134|PAK2	MULTI-SECPEP	A375_MHC_IP_R1	1	513.6788330078125	2	513.818941	1025.62333	-0.56437	-0.00028998	0.15989	8.2155E-05	-0.40448	-0.00020783	513.8192403419454	64.775	0.35616	64.775	64.649	65.005	0					9	6	2	0	0	0	0.43707	1	23476	23476		21.747	0	1	640410	+		41139	21610	30244	30484	40046	40046					0.11154308748336916
QLNLIAEPIY	10	Unmodified	_QLNLIAEPIY_					0	0	0			REV__nc|ENSG00000186001|Q96II8-2|LRCH3	REV__nc|ENSG00000186001|Q96II8-2|LRCH3	MSMS	A375_MHC_IP_R1	1	587.7274780273438	2	587.329339	1172.64412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.231	1	99.231	98.731	99.731	0								0	0	0	0.15308	1	36453	36453		10.824	0.75	1		+		41140	27419	30245	30485	40047	40047					0.06470854337317178
QLNRPNYI	8	Unmodified	_QLNRPNYI_					0	0	0			REV__ENSG00000116016|ENST00000263734|EPAS1	REV__ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	A375_MHC_IP_R1	1	510.20184326171875	2	509.277441	1016.54033	-0.25878	-0.00013179	-2.5726	-0.0013102	-2.8314	-0.001442	509.2770581742445	42.596	1.1151	42.596	42.082	43.197	0					66	21	5	0	0	0	0.72761	2	14829	14829;14854		26.341	1.6674	1	41390000	+		41141	17932	30246	30486	40048;40049	40048					0.032719920203248876
QLNRPNYI	8	Unmodified	_QLNRPNYI_					0	0	0			REV__ENSG00000116016|ENST00000263734|EPAS1	REV__ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	A375_MHC_IP_R2	2	510.1751403808594	2	509.277441	1016.54033	-0.73516	-0.0003744	-2.3819	-0.0012131	-3.1171	-0.0015875	509.2771544171825	41.903	1.1721	42.678	42.098	43.27	0.77451					85	22	5	0	0	0	0.72761	1	15637	15637		26.341	1.6674	1	53667000	+		41142	17932	30246	30486	40050	40050					0.032719920203248876
QLNSRWIEF	9	Unmodified	_QLNSRWIEF_					0	0	0		nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD	nc|ENSG00000198947|P11532-4|DMD	nc|ENSG00000198947|P11532-4|DMD	MULTI-SECPEP	A375_MHC_IP_R1	1	597.2086181640625	2	596.809105	1191.60366	-0.58579	-0.0003496	-0.50195	-0.00029957	-1.0877	-0.00064917	596.8087591759744	90.302	0.81248	90.302	89.981	90.794	0					37	15	3	0	0	0	0.38578	1	33155	33155		34.402	0	1	6917800			41143	9381	30247	30487	40051	40051					0.015519327375386638
QLPFSYYYIE	10	Unmodified	_QLPFSYYYIE_					0	0	0		PLCE1|p.L1398F|1|0.75|ENSG00000138193|chr10:94265869-94265869|C/T|missense_variant	PLCE1|p.L1398F|1|0.75|ENSG00000138193|chr10:94265869-94265869|C/T|missense_variant	PLCE1|p.L1398F|1|0.75|ENSG00000138193|chr10:94265869-94265869|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	441.59442138671875	3	441.548295	1321.62306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.163	1	43.936	43.436	44.436	0.7724								0	0	0	0.15353	1	16074	16074		5.4027	1.5568	1				41144	15194	30248	30488	40052	40052					-0.02489155762214068
QLPGEHLPGF	10	Unmodified	_QLPGEHLPGF_					0	0	0			REV__PLEKHG6|p.P7L|1|0.67|ENSG00000008323|chr12:6312246-6312246|C/T|missense_variant	REV__PLEKHG6|p.P7L|1|0.67|ENSG00000008323|chr12:6312246-6312246|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	365.6047668457031	3	365.525825	1093.55564	-0.027528	-1.0062E-05	0.42654	0.00015591	0.39902	0.00014585	365.52605390445115	32.786	0.76349	33.523	33.213	33.977	0.73692					20	14	2	0	0	0	0.78945	1	11648	11648		8.4443	0	1	2766600	+		41145	27804	30249	30489	40053	40053					0.012608588175226032
QLPGHSGPPVR	11	Unmodified	_QLPGHSGPPVR_					0	0	0		ENSG00000204315|ENST00000375156|FKBPL	ENSG00000204315|ENST00000375156|FKBPL	ENSG00000204315|ENST00000375156|FKBPL	MULTI-MSMS	A375_MHC_IP_R1	1	382.6124267578125	3	382.21224	1143.61489	0.0011203	4.282E-07	0.63324	0.00024203	0.63436	0.00024246	382.2122497463314	30.557	0.75824	30.557	30.15	30.908	0					35	14	4	0	0	0	0.72883	1	9675	9675		10.016	10.016	1	5344500			41146	9428	30250	30490	40054	40054					0.048827548317149194
QLPKQNELQ	9	Unmodified	_QLPKQNELQ_					0	0	0			REV__ENSG00000082213|ENST00000325366|C5orf22	REV__ENSG00000082213|ENST00000325366|C5orf22	MULTI-SECPEP	A375_MHC_IP_R1	1	366.6328125	3	366.536501	1096.58767	0.40284	0.00014766	-0.67259	-0.00024653	-0.26974	-9.887E-05	366.8699024548364	44.19	0.30855	44.19	44.061	44.37	0					6	5	2	0	0	0	0.73363	1	15388	15388		7.1017	2.2047	1	470700	+		41147	16788	30251	30491	40055	40055					0.04324226500648365
QLPMPRLVWPR	11	Unmodified	_QLPMPRLVWPR_					0	0	0			REV__ENSG00000108797|ENST00000264638|CNTNAP1	REV__ENSG00000108797|ENST00000264638|CNTNAP1	MULTI-MSMS	A375_MHC_IP_R2	2	698.4852294921875	2	696.900274	1391.786	-0.65355	-0.00045546	-0.7805	-0.00054393	-1.434	-0.00099939	696.8996138788576	132.27	1.4736	132.46	131.9	133.37	0.18953					80	28	5	0	0	0	0.73016	1	52028	52028		8.7454	3.4485	1	25217000	+		41148	17554	30252	30492	40056	40056					0.10577368878671223
QLPPFPREL	9	Unmodified	_QLPPFPREL_					0	0	0		nc|ENSG00000031823|Q9H6Z4-2|RANBP3;ENSG00000031823|ENST00000340578|RANBP3;ENST00000591881.5_1_19:5950841-5951586:-|nuORF	nc|ENSG00000031823|Q9H6Z4-2|RANBP3	nc|ENSG00000031823|Q9H6Z4-2|RANBP3	MULTI-SECPEP	A375_MHC_IP_R2	2	549.2107543945312	2	548.811116	1095.60768	-0.73421	-0.00040294	-0.086217	-4.7317E-05	-0.82043	-0.00045026	548.8110199998666	83.657	1.2249	84.397	83.797	85.022	0.73962					40	23	2	0	0	0	0.51395	1	31928	31928		31.268	0	1	3871000			41149	1115	30253	30493	40057	40057					0.06370022231271832
QLPQLLQA	8	Unmodified	_QLPQLLQA_					0	0	0			REV__ENSG00000272333|ENST00000420124|KMT2B	REV__ENSG00000272333|ENST00000420124|KMT2B	MULTI-SECPEP	A375_MHC_IP_R2	2	456.1713562011719	2	455.77146	909.528367	-0.28165	-0.00012837	-0.13913	-6.3409E-05	-0.42077	-0.00019178	455.77140625114464	74.655	0.66042	75.392	75.111	75.772	0.73752					23	12	3	0	0	0	0.50167	1	28310	28310		60.39	9.5345	1	4595500	+		41150	22947	30254	30494	40058	40058					0.06998375277134983
QLPQNQKLY	9	Unmodified	_QLPQNQKLY_					0	0	0			REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	MSMS	A375_MHC_IP_R1	1	566.3599243164062	2	566.31148	1130.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.85	1	103.85	103.35	104.35	0								0	0	0	0.15486	1	38134	38134		7.2892	0.56607	1		+		41151	19028	30255	30495	40059	40059					0.04832816880343671
QLPSPFFIF	9	Unmodified	_QLPSPFFIF_					0	0	0			REV__ENST00000527449.1_1_14:73574437-73577964:+|nuORF	REV__ENST00000527449.1_1_14:73574437-73577964:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	366.28204345703125	3	365.867299	1094.58007	0.041559	1.5205E-05	2.0722	0.00075816	2.1138	0.00077336	366.20230610411846	39.77	0.306	40.545	40.32	40.626	0.77451					11	5	3	0	0	0	0.76187	1	14717	14717		7.609	0	1	598180	+		41152	25789	30256	30496	40060	40060					0.03656118971025535
QLPTLTSNSH	10	Unmodified	_QLPTLTSNSH_					0	0	0			REV__KCNH8|p.D1017N|1|0.37|ENSG00000183960|chr3:19533824-19533824|G/A|missense_variant	REV__KCNH8|p.D1017N|1|0.37|ENSG00000183960|chr3:19533824-19533824|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	549.2107543945312	2	549.28292	1096.55129	-0.70902	-0.00038945	-3.6994	-0.002032	-4.4084	-0.0024215	549.7823695036857	84.061	0.46318	84.8	84.508	84.971	0.73962					11	8	2	0	0	0	0.78945	1	31928	31928		19.257	9.9096	1	2119800	+		41153	26826	30257	30497	40061	40061					0.006873496039361271
QLPTRRPYFTF	11	Unmodified	_QLPTRRPYFTF_					0	0	0			REV__nc|ENSG00000168268|Q9H857-4|NT5DC2	REV__nc|ENSG00000168268|Q9H857-4|NT5DC2	MULTI-SECPEP	A375_MHC_IP_R1	1	476.13287353515625	3	475.9261	1424.75647	-0.65754	-0.00031294	-3.7177	-0.0017694	-4.3753	-0.0020823	475.92346434551894	52.74	0.50819	52.74	52.438	52.946	0					11	9	2	0	0	0	0.99681	1	18745	18745		4.4062	1.7749	1	994150	+		41154	20839	30258	30498	40062	40062					0.06108128134155777
QLQDFDWQV	9	Unmodified	_QLQDFDWQV_					0	0	0		ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	MULTI-MSMS	A375_MHC_IP_R1	1	590.17724609375	2	589.77747	1177.54039	0.14137	8.3377E-05	-0.15925	-9.392E-05	-0.017876	-1.0543E-05	589.7774368798732	114.81	0.80923	114.81	114.41	115.22	0					36	15	3	0	0	0	0.0028027	1	42062	42062		139.14	82.961	1	9268800			41155	7371	30259	30499	40063	40063					-0.04128052770352042
QLQDFDWQV	9	Unmodified	_QLQDFDWQV_					0	0	0		ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	MULTI-MSMS	A375_MHC_IP_R2	2	590.1770629882812	2	589.77747	1177.54039	-0.35934	-0.00021193	-0.13024	-7.6814E-05	-0.48958	-0.00028874	589.7773890830479	114.06	0.70473	114.77	114.48	115.19	0.70985					31	13	3	0	0	0	0.0028027	1	43008	43008		139.14	80.46	1	10056000			41156	7371	30259	30499	40064	40064					-0.04128052770352042
QLQDTLIHL	9	Unmodified	_QLQDTLIHL_					0	0	0		ENST00000558034.1_1_3:53321600-53322346:-|nuORF;nc|ENSG00000272886|Q9NPI6-2|DCP1A;ENSG00000272886|ENST00000610213|DCP1A	ENST00000558034.1_1_3:53321600-53322346:-|nuORF	ENST00000558034.1_1_3:53321600-53322346:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	541.1099243164062	2	540.806031	1079.59751	-0.50406	-0.0002726	-0.036253	-1.9606E-05	-0.54032	-0.00029221	540.8059357137222	88.689	0.50949	88.689	88.409	88.919	0					15	9	2	0	0	0	0.050875	1	32559	32559		85.357	18.013	1	2719700			41157	9994	30260	30500	40065	40065					0.060894145060501614
QLQDYQHFV	9	Unmodified	_QLQDYQHFV_					0	0	0		ENSG00000138771|ENST00000296043|SHROOM3;SHROOM4|p.M1457I|1|0.7|ENSG00000158352|chrX:50596806-50596806|C/T|missense_variant;nc|ENSG00000158352|Q9ULL8-2|SHROOM4;ENSG00000158352|ENST00000376020|SHROOM4	ENSG00000138771|ENST00000296043|SHROOM3;nc|ENSG00000158352|Q9ULL8-2|SHROOM4	ENSG00000138771|ENST00000296043|SHROOM3	MULTI-SECPEP	A375_MHC_IP_R1	1	589.64208984375	2	589.285463	1176.55637	-0.20816	-0.00012267	0.12829	7.5596E-05	-0.079879	-4.7071E-05	589.2854484050464	62.861	0.71812	62.861	62.505	63.223	0					31	13	3	0	0	0	0.3213	1	22621	22621		46.021	32.115	1	10360000			41158	5031;6302	30261	30501	40066	40066					-0.02484346533447024
QLQDYQHFV	9	Unmodified	_QLQDYQHFV_					0	0	0		ENSG00000138771|ENST00000296043|SHROOM3;SHROOM4|p.M1457I|1|0.7|ENSG00000158352|chrX:50596806-50596806|C/T|missense_variant;nc|ENSG00000158352|Q9ULL8-2|SHROOM4;ENSG00000158352|ENST00000376020|SHROOM4	ENSG00000138771|ENST00000296043|SHROOM3;nc|ENSG00000158352|Q9ULL8-2|SHROOM4	ENSG00000138771|ENST00000296043|SHROOM3	MULTI-MATCH	A375_MHC_IP_R2	2		2	589.285463	1176.55637	-0.74106	-0.0004367	0.059634	3.5142E-05	-0.68143	-0.00040156	589.2853917402032	62.193	0.71155	62.936	62.622	63.333	0.74263	0.037608	-3.3245E-05	NaN	46.021	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9753500			41159	5031;6302	30261	30501							-0.02484346533447024
QLQEGTYTW	9	Unmodified	_QLQEGTYTW_					0	0	0			REV__tr|U7SPX7|U7SPX7_FUSNU34kDamembraneantigenOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01655PE=3SV=1	REV__tr|U7SPX7|U7SPX7_FUSNU34kDamembraneantigenOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01655PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	562.6849365234375	2	563.264196	1124.51384	-0.62104	-0.00034981	-0.087213	-4.9124E-05	-0.70825	-0.00039893	563.7665204307176	32.861	0.35518	32.861	32.684	33.04	0					8	6	2	0	0	0	0.73363	1	10610	10610		10.824	0	1	1452200	+		41160	28372	30262	30502	40067	40067					-0.04343741661659806
QLQEKLVAL	9	Unmodified	_QLQEKLVAL_					0	0	0		nc|ENSG00000019144|Q86UU1-3|PHLDB1;ENST00000532517.5_1_11:118498004-118527530:+|nuORF;nc|ENSG00000019144|Q86UU1-2|PHLDB1;ENSG00000019144|ENST00000600882|PHLDB1	nc|ENSG00000019144|Q86UU1-3|PHLDB1	nc|ENSG00000019144|Q86UU1-3|PHLDB1	MULTI-SECPEP	A375_MHC_IP_R2	2	521.718505859375	2	521.318774	1040.623	-0.78106	-0.00040718	0.41663	0.0002172	-0.36444	-0.00018999	521.318953011027	66.221	0.56157	66.959	66.68	67.241	0.73811					24	10	3	0	0	0	0.10103	1	25069	25069		62.573	8.7399	1	10709000			41161	1051	30263	30503	40068	40068					0.10430889028475576
QLQQLISFS	9	Unmodified	_QLQQLISFS_					0	0	0		ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	MSMS	A375_MHC_IP_R2	2	355.2516784667969	3	355.197596	1062.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.098	1	36.868	36.368	37.368	0.76991								0	0	0	0.15486	1	13131	13131		7.609	0	1				41162	7320	30264	30504	40069	40069					0.04217725614716983
QLQQQRRRRRR	11	Unmodified	_QLQQQRRRRRR_					0	0	0			REV__ENST00000405737.2_2_13:41635036-41635183:-|nuORF	REV__ENST00000405737.2_2_13:41635036-41635183:-|nuORF	MSMS	A375_MHC_IP_R2	2	790.9763793945312	2	790.975079	1579.9356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.82	1	131.03	130.53	131.53	0.2142								0	0	0	0.16337	1	51457	51457		1.1933	1.1933	1				41163	24436	30265	30505	40070	40070					0.16883450265459032
QLQRMWFLR	9	Unmodified	_QLQRMWFLR_					0	0	0		ENST00000425452.1_1_3:47316805-47316901:-|nuORF;ENST00000335044.6_2_3:47315100-47316901:-|nuORF	ENST00000425452.1_1_3:47316805-47316901:-|nuORF	ENST00000425452.1_1_3:47316805-47316901:-|nuORF	MSMS	A375_MHC_IP_R2	2	639.3475952148438	2	639.350417	1276.68628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.15	1	120.68	120.18	121.18	0.5321								0	0	0	0.15468	1	45809	45809		13.906	3.7555	1				41164	10801	30266	30506	40071	40071					0.05900551264699061
QLQRVLLLWTR	11	Unmodified	_QLQRVLLLWTR_					0	0	0			REV__ENST00000360004.5_2_6:32546675-32546804:-|nuORF	REV__ENST00000360004.5_2_6:32546675-32546804:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	714.3386840820312	2	713.438078	1424.8616	-0.78435	-0.00055959	0.15	0.00010701	-0.63435	-0.00045257	713.4381892618785	84.386	1.1193	84.386	84.091	85.21	0					42	21	3	0	0	0	0.73679	1	30880	30880		2.7352	1.7729	1	25913000	+		41165	23886	30267	30507	40072	40072					0.16616669330596778
QLQSKEVTW	9	Unmodified	_QLQSKEVTW_					0	0	0		ENST00000438469.2_1_1:146553889-146554591:-|nuORF	ENST00000438469.2_1_1:146553889-146554591:-|nuORF	ENST00000438469.2_1_1:146553889-146554591:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	560.195556640625	2	559.795663	1117.57677	-0.30122	-0.00016862	-0.020931	-1.1717E-05	-0.32215	-0.00018034	559.7955919820326	78.768	0.81089	78.768	78.454	79.265	0					35	15	4	0	0	0	0.43207	1	28688	28688		29.082	2.8134	1	14308000			41166	11950	30268	30508	40073	40073					0.022688241263722375
QLQVYEQLL	9	Unmodified	_QLQVYEQLL_					0	0	0			REV__nc|ENSG00000150281|Q16619-2|CTF1	REV__nc|ENSG00000150281|Q16619-2|CTF1	MULTI-SECPEP	A375_MHC_IP_R2	2	567.713623046875	2	567.313689	1132.61282	-0.28736	-0.00016303	0.23857	0.00013534	-0.048795	-2.7682E-05	567.3137101075228	89.805	0.71632	90.537	90.085	90.801	0.7318					18	13	2	0	0	0	0.34746	1	34209	34209		38.176	0	1	1354800	+		41167	19709	30269	30509	40074	40074					0.05182281303223135
QLRAELLQLY	10	Unmodified	_QLRAELLQLY_					0	0	0		ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	MULTI-MSMS	A375_MHC_IP_R2	2	416.64300537109375	3	416.243317	1245.70812	-0.30126	-0.0001254	-0.30524	-0.00012706	-0.6065	-0.00025245	416.2431723503106	38.157	0.46227	38.931	38.636	39.098	0.77451					22	8	4	0	0	0	0.64017	1	14004	14004		17.863	3.645	1	4620500			41168	1490	30270	30510	40075	40075					0.09509634494270358
QLRCRLCHRTR	11	Unmodified	_QLRCRLCHRTR_					0	0	0		ENST00000548159.5_2_12:70637735-70637981:+|nuORF;ENST00000549750.5_1_12:70637735-70671968:+|nuORF	ENST00000548159.5_2_12:70637735-70637981:+|nuORF	ENST00000548159.5_2_12:70637735-70637981:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	480.6955261230469	3	481.262834	1440.76667	-0.63303	-0.00030465	0.42311	0.00020363	-0.20992	-0.00010102	481.2629698955367	132.92	0.66464	132.92	132.69	133.36	0					37	12	4	0	0	0	1.0012	1	51229	51229		1.2148	1.2148	1	10785000			41169	13350	30271	30511	40076	40076					0.0639208931606845
QLREDSNNL	9	Unmodified	_QLREDSNNL_					0	0	0			REV__nc|ENSG00000054267|Q4LE39-4|ARID4B	REV__nc|ENSG00000054267|Q4LE39-4|ARID4B	MSMS	A375_MHC_IP_R1	1	544.6676025390625	2	544.770177	1087.5258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.3	1	139.3	138.8	139.8	0								0	0	0	0.15486	1	53548	53548		3.5965	0	1		+		41170	16402	30272	30512	40077	40077					-0.014461249184705594
QLRGVAFV	8	Unmodified	_QLRGVAFV_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.R3788C|3|0.41|ENSG00000151835|chr13:23332514-23332514|G/A|missense_variant	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	A375_MHC_IP_R1	1	445.6661071777344	2	445.266345	888.518136	-0.058818	-2.619E-05	-0.34046	-0.0001516	-0.39928	-0.00017779	445.26614743539517	73.79	0.65794	73.79	73.539	74.197	0					20	12	2	0	0	0	0.77488	1	26869	26869		13.508	0	1	3015600			41171	5930	30273	30513	40078	40078					0.06941812342552112
QLRLEAGLN	9	Unmodified	_QLRLEAGLN_					0	0	0		ENSG00000174021|ENST00000370645|GNG5	ENSG00000174021|ENST00000370645|GNG5	ENSG00000174021|ENST00000370645|GNG5	MULTI-MSMS	A375_MHC_IP_R2	2	508.7109375	2	507.290548	1012.56654	-0.92346	-0.00046846	0.93198	0.00047279	0.0085282	4.3263E-06	507.2906515804772	40.744	0.86462	41.518	41.234	42.098	0.77451					49	16	4	0	0	0	0.047602	1	15040	15040		65.235	4.8455	1	76014000			41172	7850	30274	30514	40079	40079					0.06076261191788035
QLRLQRGRP	9	Unmodified	_QLRLQRGRP_					0	0	0			REV__nc|ENSG00000198026|Q9H4Z2-2|ZNF335	REV__nc|ENSG00000198026|Q9H4Z2-2|ZNF335	MULTI-MSMS	A375_MHC_IP_R1	1	562.7435913085938	2	562.343981	1122.67341	-0.039242	-2.2068E-05	-1.5669	-0.00088113	-1.6061	-0.0009032	562.3431754490379	127.22	0.60847	127.22	126.96	127.57	0					18	11	2	0	0	0	0.75764	1	48686	48686		1.8442	0	1	10596000	+		41173	22337	30275	30515	40080	40080					0.11697856196815337
QLRLRLRL	8	Unmodified	_QLRLRLRL_					0	0	0			REV__ENST00000267101.7_1_12:56473655-56474027:+|nuORF	REV__ENST00000267101.7_1_12:56473655-56474027:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1066.927734375	1	1067.71601	1066.70873	-0.42393	-0.00045263	-0.98904	-0.001056	-1.413	-0.0015086	1067.7158181005188	122.67	2.7766	122.67	121.57	124.34	0					84	39	3	0	0	0	0.972	1	45555	45555		2.3027	0	1	1960099999.9999998	+		41174	23261	30276	30516	40081	40081					0.1780451872461981
QLRLRLRL	8	Unmodified	_QLRLRLRL_					0	0	0			REV__ENST00000267101.7_1_12:56473655-56474027:+|nuORF	REV__ENST00000267101.7_1_12:56473655-56474027:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	1067.71601	1066.70873	0.066642	7.1154E-05	-1.684	-0.001798	-1.6173	-0.0017268	1067.7149593516979	122.46	2.6857	122.84	121.96	124.64	0.37661	0.084882	-0.00034942	NaN	2.3027	92	52	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1534099999.9999998	+		41175	23261	30276	30516							0.1780451872461981
QLRLVKRRR	9	Unmodified	_QLRLVKRRR_					0	0	0			REV__ENSG00000134815|ENST00000328771|DHX34	REV__ENSG00000134815|ENST00000328771|DHX34	MSMS	A375_MHC_IP_R1	1	612.7506713867188	2	612.909822	1223.80509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.78	1	119.78	119.28	120.28	0								0	0	0	0.15486	1	44318	44318		4.3292	0	1		+		41176	18803	30277	30517	40082	40082					0.2021408628456811
QLRMQKRV	8	Unmodified	_QLRMQKRV_					0	0	0			REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant;REV__ASPM|p.L1743F|1|0.49|ENSG00000066279|chr1:197104024-197104024|G/A|missense_variant	REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	1058.2938232421875	1	1058.62514	1057.61787	0.046808	4.9552E-05	-2.9297	-0.0031015	-2.8829	-0.0030519	1058.6166670828277	119.52	0.40753	119.52	119.28	119.69	0					12	7	3	0	0	0	0.77717	1	44242	44242		5.2307	0	1	12225000	+		41177	15465;15466	30278	30518	40083	40083					0.0913630668485439
QLRMQKRV	8	Unmodified	_QLRMQKRV_					0	0	0			REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant;REV__ASPM|p.L1743F|1|0.49|ENSG00000066279|chr1:197104024-197104024|G/A|missense_variant	REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	1058.62514	1057.61787	0.046808	4.9552E-05	-2.9297	-0.0031015	-2.8829	-0.0030519	1058.6166670828277	119.52	0.40753	119.52	119.28	119.69	0	0	0	NaN	5.2307	12	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12225000	+		41178	15465;15466	30278	30518							0.0913630668485439
QLRPRSVPFIH	11	Unmodified	_QLRPRSVPFIH_					0	0	0		ENSG00000077454|ENST00000310300|LRCH4;ENST00000485071.2_1_7:100173012-100174533:-|nuORF	ENSG00000077454|ENST00000310300|LRCH4	ENSG00000077454|ENST00000310300|LRCH4	MULTI-SECPEP	A375_MHC_IP_R2	2	449.908935546875	3	450.598206	1348.77279	-0.57296	-0.00025817	0.17633	7.9453E-05	-0.39663	-0.00017872	450.598283279011	23.576	0.30354	24.206	24.029	24.333	0.63014					7	5	2	0	0	0	0.99411	1	7562	7562		4.1166	0	1	1696600			41179	1656	30279	30519	40084	40084					0.11235254090934177
QLRQGELDLK	10	Unmodified	_QLRQGELDLK_					0	0	0			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-SECPEP	A375_MHC_IP_R2	2	400.2849426269531	3	400.562938	1198.66699	0.04589	1.8382E-05	3.9047	0.0015641	3.9506	0.0015825	400.5647846424409	69.706	0.20441	70.44	70.284	70.488	0.73421					5	3	2	0	0	0	0.89761	1	26364	26364		19.626	3.0601	1	560540	+		41180	18434	30280	30520	40085	40085					0.07559873454783883
QLRRKRRRMFR	11	Unmodified	_QLRRKRRRMFR_					0	0	0			REV__ENST00000391975.5_1_2:242194961-242195633:-|nuORF	REV__ENST00000391975.5_1_2:242194961-242195633:-|nuORF	MSMS	A375_MHC_IP_R2	2	534.9950561523438	3	534.995188	1601.96373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.33	1	122.7	122.2	123.2	0.3766								0	0	0	0.1636	1	46867	46867		0	0	1		+		41181	24267	30281	30521	40086	40086					0.18683056921190655
QLRRLAWLQRL	11	Unmodified	_QLRRLAWLQRL_					0	0	0		ENST00000418710.2_1_7:20824815-20825286:-|nuORF	ENST00000418710.2_1_7:20824815-20825286:-|nuORF	ENST00000418710.2_1_7:20824815-20825286:-|nuORF	MSMS	A375_MHC_IP_R1	1	484.9685363769531	3	484.968522	1451.88374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.068	1	21.068	20.568	21.568	0								0	0	0	0.16313	1	5488	5488		2.4348	0	1				41182	11711	30282	30522	40087	40087					0.17586893799011705
QLRRRWRRRRW	11	Unmodified	_QLRRRWRRRRW_					0	0	0			REV__ENST00000597330.1_1_19:58557520-58558126:+|nuORF	REV__ENST00000597330.1_1_19:58557520-58558126:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	575.744873046875	3	575.68048	1724.01961	-0.48473	-0.00027905	-0.49621	-0.00028566	-0.98094	-0.00056471	575.680174374944	136.14	0.97479	136.14	135.79	136.77	0					44	18	3	0	0	0	0.73934	1	52519	52519		0	0	1	7227300	+		41183	26479	30283	30523	40088	40088					0.18656026153030325
QLRRRWRRRRW	11	Unmodified	_QLRRRWRRRRW_					0	0	0			REV__ENST00000597330.1_1_19:58557520-58558126:+|nuORF	REV__ENST00000597330.1_1_19:58557520-58558126:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	575.4114990234375	3	575.68048	1724.01961	-0.48473	-0.00027905	-0.49621	-0.00028566	-0.98094	-0.00056471	575.680174374944	136.14	0.97479	136.14	135.79	136.77	0					44	18	3	0	0	0	1.0015	1	52501	52501		0.08335	0.08335	1	7227300	+		41184	26479	30283	30523	40089	40089					0.18656026153030325
QLRRRWRRRRW	11	Unmodified	_QLRRRWRRRRW_					0	0	0			REV__ENST00000597330.1_1_19:58557520-58558126:+|nuORF	REV__ENST00000597330.1_1_19:58557520-58558126:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	575.68048	1724.01961	-0.036797	-2.1183E-05	-0.96548	-0.00055581	-1.0023	-0.00057699	575.6799928645169	136.08	1.283	136.19	135.79	137.07	0.11133	0.022223	-0.00040567	NaN	0.08335	54	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7398100	+		41185	26479	30283	30523							0.18656026153030325
QLRRSRRRRRR	11	Unmodified	_QLRRSRRRRRR_					0	0	0			REV__ENST00000418710.2_1_7:20824815-20825286:-|nuORF	REV__ENST00000418710.2_1_7:20824815-20825286:-|nuORF	MSMS	A375_MHC_IP_R1	1	798.2478637695312	2	798.504338	1594.99412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.9	1	132.9	132.4	133.4	0								0	0	0	0.1636	1	51246	51246		0	0	1		+		41186	24560	30284	30524	40090	40090					0.22042551630602247
QLRRTEEEA	9	Unmodified	_QLRRTEEEA_					0	0	0			REV__ENSG00000168517|ENST00000589230|HEXIM2	REV__ENSG00000168517|ENST00000589230|HEXIM2	MULTI-SECPEP	A375_MHC_IP_R1	1	566.6937866210938	2	566.291276	1130.568	-0.32197	-0.00018233	4.2461	0.0024045	3.9242	0.0022222	566.2943606862303	31.591	0.50655	31.591	31.363	31.87	0					11	9	2	0	0	0	0.5212	1	10164	10164		32.786	11.249	1	2507400	+		41187	20863	30285	30525	40091	40091					0.007938504899129839
QLRTKTLDVLF	11	Unmodified	_QLRTKTLDVLF_					0	0	0			REV__SLC25A14|p.P60L|1|0.27|ENSG00000102078|chrX:130346553-130346553|C/T|missense_variant	REV__SLC25A14|p.P60L|1|0.27|ENSG00000102078|chrX:130346553-130346553|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	445.6656799316406	3	445.266122	1332.77654	-0.63045	-0.00028072	-0.61292	-0.00027291	-1.2434	-0.00055363	445.26565508345294	33.286	0.30604	34.039	33.789	34.095	0.75225					13	5	3	0	0	0	0.99856	1	11933	11933		1.7824	1.6991	1	4421800	+		41188	27981	30286	30526	40092	40092					0.12345879074132426
QLRYEYPL	8	Unmodified	_QLRYEYPL_					0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	A375_MHC_IP_R2	2	360.9571228027344	3	361.194075	1080.5604	-0.12305	-4.4447E-05	-0.62013	-0.00022399	-0.74319	-0.00026843	361.19369133351023	42.9	0.45592	43.672	43.319	43.775	0.7724					11	8	2	0	0	0	0.972	1	15957	15957		1.4819	0	1	1423300	+		41189	21568	30287	30527	40093	40093					0.023337429602634074
QLSAQHFNL	9	Unmodified	_QLSAQHFNL_					0	0	0			REV__ENST00000475622.5_1_5:1462981-1463104:-|nuORF	REV__ENST00000475622.5_1_5:1462981-1463104:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	529.9620361328125	2	529.274898	1056.53524	-1.0197	-0.00053972	-0.28857	-0.00015273	-1.3083	-0.00069245	529.2748398690688	52.528	0.30458	53.28	53.184	53.489	0.75225					7	5	2	0	0	0	0.4261	1	19839	19839		8.7454	0	1	644130	+		41190	25169	30288	30528	40094	40094					0.009236881576953238
QLSDVAEKL	9	Unmodified	_QLSDVAEKL_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	A375_MHC_IP_R1	1	501.6846923828125	2	501.776939	1001.53933	-0.45343	-0.00022752	-0.0080132	-4.0209E-06	-0.46145	-0.00023154	501.7768616288787	53.279	0.91272	53.279	52.897	53.809	0					51	17	4	0	0	0	0.16945	1	18899	18899		40.239	0.28951	1	36877000			41191	7831	30289	30529	40095	40095					0.038617328607642776
QLSEKFFKA	9	Unmodified	_QLSEKFFKA_					0	0	0		ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B	ENSG00000077097|ENST00000264331|TOP2B	ENSG00000077097|ENST00000264331|TOP2B	MULTI-SECPEP	A375_MHC_IP_R2	2	366.6449890136719	3	366.537842	1096.5917	0.17641	6.4661E-05	-0.12486	-4.5766E-05	0.05155	1.8895E-05	366.53779252103413	42.369	0.35796	43.141	42.91	43.268	0.7724					14	6	3	0	0	0	0.59927	1	15736	15736		23.801	23.801	1	2170800			41192	1646	30290	30530	40096	40096					0.04726315994366814
QLSELLKQL	9	Unmodified	_QLSELLKQL_					0	0	0			REV__nc|ENSG00000086475|P49903-2|SEPHS1	REV__nc|ENSG00000086475|P49903-2|SEPHS1	MULTI-MSMS	A375_MHC_IP_R2	2	358.28485107421875	3	357.88513	1070.63356	-0.64387	-0.00023043	-0.25332	-9.066E-05	-0.89719	-0.00032109	357.8850966076481	36.695	0.45773	37.466	37.157	37.615	0.7709					14	8	2	0	0	0	0.042871	1	13369	13369		67.081	5.9908	1	2967200	+		41193	16854	30291	30531	40097	40097					0.10106871682887686
QLSELLKQL	9	Unmodified	_QLSELLKQL_					0	0	0			REV__nc|ENSG00000086475|P49903-2|SEPHS1	REV__nc|ENSG00000086475|P49903-2|SEPHS1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	357.88513	1070.63356	-0.64387	-0.00023043	-0.25332	-9.066E-05	-0.89719	-0.00032109	357.8850966076481	36.695	0.45773	37.466	37.157	37.615	0.7709	-0.084912	0.0002069	NaN	67.081	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2967200	+		41194	16854	30291	30531							0.10106871682887686
QLSFPKRFK	9	Unmodified	_QLSFPKRFK_					0	0	0			REV__ENST00000493087.5_1_12:32755237-32793464:+|nuORF	REV__ENST00000493087.5_1_12:32755237-32793464:+|nuORF	MSMS	A375_MHC_IP_R1	1	384.2861633300781	3	384.229231	1149.66586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.847	1	35.847	35.347	36.347	0								0	0	0	0.15486	1	11953	11953		5.7834	0.38072	1		+		41195	25420	30292	30532	40098	40098					0.09701703876544343
QLSFYKALK	9	Unmodified	_QLSFYKALK_					0	0	0			REV__ENSG00000232040|ENST00000452236|SCAND3	REV__ENSG00000232040|ENST00000452236|SCAND3	MULTI-SECPEP	A375_MHC_IP_R1	1	366.9645080566406	3	366.54997	1096.62808	0.21149	7.7521E-05	-0.22322	-8.1821E-05	-0.011732	-4.3003E-06	366.5500102319155	33.368	0.30508	33.368	33.14	33.445	0					8	5	2	0	0	0	0.55359	1	10918	10918		7.1017	0	1	1502700	+		41196	22744	30293	30533	40099	40099					0.08363192891079052
QLSGLAWGKC	10	Unmodified	_QLSGLAWGKC_					0	0	0			REV__ENST00000375204.2_1_9:100008408-100054866:+|nuORF	REV__ENST00000375204.2_1_9:100008408-100054866:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	355.4599609375	3	354.851543	1061.5328	-0.16205	-5.7504E-05	0.035636	1.2646E-05	-0.12642	-4.4859E-05	354.85162064044346	36.938	0.40279	36.938	36.745	37.148	0					12	7	2	0	0	0	0.93961	1	12361	12361		1.5923	1.5923	1	1955500	+		41197	24123	30294	30534	40100	40100					0.004495164283980557
QLSKLELH	8	Unmodified	_QLSKLELH_					0	0	0		ENST00000575147.5_1_17:6663161-6665275:+|nuORF;nc|ENSG00000132530|Q6GPH4-4|XAF1;nc|ENSG00000132530|Q6GPH4-3|XAF1;nc|ENSG00000132530|Q6GPH4-5|XAF1;ENST00000575369.5_1_17:6662992-6674357:+|nuORF;nc|ENSG00000132530|Q6GPH4-2|XAF1;nc|ENSG00000132530|Q6GPH4-7|XAF1;ENSG00000132530|ENST00000361842|XAF1	ENST00000575147.5_1_17:6663161-6665275:+|nuORF	ENST00000575147.5_1_17:6663161-6665275:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6501770019531	2	484.282192	966.549831	-0.73585	-0.00035636	-0.084207	-4.078E-05	-0.82006	-0.00039714	484.2821419472791	36.294	0.40791	37.065	36.85	37.258	0.7709					10	7	2	0	0	0	0.96266	1	13232	13232		16.942	0	1	1186800			41198	4419	30295	30535	40101	40101					0.06521760305838598
QLSLARAV	8	Unmodified	_QLSLARAV_					0	0	0			REV__ENST00000293190.9_1_17:72838445-72839279:-|nuORF	REV__ENST00000293190.9_1_17:72838445-72839279:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	429.2910461425781	2	429.263802	856.513051	-0.16417	-7.0472E-05	0.41721	0.00017909	0.25304	0.00010862	429.263900360194	63.058	0.35437	63.8	63.584	63.938	0.74263					11	6	2	0	0	0	0.7754	1	23851	23851		11.64	1.5664	1	1685100	+		41199	23370	30296	30536	40102	40102					0.07905508479939272
QLSLQELK	8	Unmodified	_QLSLQELK_					0	0	0			REV__ENSG00000139537|ENST00000320516|CCDC65	REV__ENSG00000139537|ENST00000320516|CCDC65	MULTI-SECPEP	A375_MHC_IP_R1	1	480.16351318359375	2	479.782025	957.549496	-0.7537	-0.00036161	2.3202	0.0011132	1.5665	0.00075156	479.7828715245916	26.485	0.3549	26.485	26.322	26.677	0					8	6	2	0	0	0	0.94587	1	7956	7956		14.838	0	1	1549300	+		41200	19161	30297	30537	40103	40103					0.0690234058599799
QLSPRLLEV	9	Unmodified	_QLSPRLLEV_					0	0	0		PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14	PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant	PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	528.2162475585938	2	527.816399	1053.61824	-0.33737	-0.00017807	-1.0064	-0.00053119	-1.3438	-0.00070927	527.816226757228	78.871	0.86389	78.871	78.606	79.47	0					33	16	4	0	0	0	0.11711	1	28775	28775		60.074	0	1	8145200			41201	15111	30298	30538	40104	40104					0.09358004885712035
QLSPRLLEV	9	Unmodified	_QLSPRLLEV_					0	0	0		PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14	PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant	PARP14|p.K1415Rfs*35|1|0.12|ENSG00000173193|chr3:122718389-122718389|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	528.216064453125	2	527.816399	1053.61824	-0.49884	-0.0002633	-0.49959	-0.00026369	-0.99843	-0.00052699	527.8160460542551	77.855	0.56347	78.598	78.365	78.929	0.74293					24	10	3	0	0	0	0.028087	1	29568	29568		106.94	3.5867	1	7196200			41202	15111	30298	30538	40105	40105					0.09358004885712035
QLSPVLLYL	9	Unmodified	_QLSPVLLYL_					0	0	0		nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	MULTI-SECPEP	A375_MHC_IP_R2	2	523.7175903320312	2	523.318243	1044.62193	-0.51387	-0.00026892	-1.0455	-0.00054715	-1.5594	-0.00081607	523.3173154238918	131.98	0.25165	132.17	132	132.25	0.18953					10	4	3	0	0	0	0.20567	1	51949	51949		37.974	0	1	6266100			41203	14622	30299	30539	40106	40106					0.1014067465955577
QLSQATPDDGY	11	Unmodified	_QLSQATPDDGY_					0	0	0			REV__ENSG00000131504|ENST00000389054|DIAPH1	REV__ENSG00000131504|ENST00000389054|DIAPH1	MULTI-MSMS	A375_MHC_IP_R1	1	598.1670532226562	2	597.7673	1193.52005	-0.39224	-0.00023447	-0.16609	-9.9283E-05	-0.55833	-0.00033375	597.7671557193693	24.99	0.81161	24.99	24.852	25.664	0					32	15	3	0	0	0	0.73016	1	7233	7233		8.7454	0	1	12656000			41204	18611	30300	30540	40107	40107					-0.06897268220814112
QLSRLDRA	8	Unmodified	_QLSRLDRA_					0	0	0			REV__nc|ENSG00000079616|Q14807-2|KIF22	REV__nc|ENSG00000079616|Q14807-2|KIF22	MULTI-SECPEP	A375_MHC_IP_R1	1	480.16351318359375	2	479.775065	957.535577	-0.74911	-0.0003594	-0.37209	-0.00017852	-1.1212	-0.00053792	479.77491118947023	26.601	0.45464	26.601	26.423	26.878	0					13	8	2	0	0	0	0.96266	1	7956	7956		11.64	0	1	3842600	+		41205	16737	30301	30541	40108	40108					0.055111078775553324
QLSTAASLGPS	11	Unmodified	_QLSTAASLGPS_					0	0	0		nc|ENSG00000196233|Q96JN0-2|LCOR;nc|ENSG00000196233|Q96JN0|LCOR	nc|ENSG00000196233|Q96JN0-2|LCOR	nc|ENSG00000196233|Q96JN0-2|LCOR	MSMS	A375_MHC_IP_R1	1	516.2058715820312	2	516.272021	1030.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.582	1	51.582	51.082	52.082	0								0	0	0	0.14479	1	18315	18315		23.79	2.0431	1				41206	14833	30302	30542	40109	40109					0.015445448553691676
QLSTPSLTGY	10	Unmodified	_QLSTPSLTGY_					0	0	0			REV__nc|ENSG00000171680|O94827-4|PLEKHG5	REV__nc|ENSG00000171680|O94827-4|PLEKHG5	MULTI-SECPEP	A375_MHC_IP_R2	2	534.174072265625	2	533.774396	1065.53424	-0.62975	-0.00033614	-0.55808	-0.00029789	-1.1878	-0.00063403	533.7740356256922	47.864	0.60788	48.626	48.225	48.833	0.76128					18	11	2	0	0	0	0.64716	1	17938	17938		22.736	8.8302	1	4428200	+		41207	21086	30303	30543	40110	40110					0.004094289981367183
QLSVATKDDFY	11	Unmodified	_QLSVATKDDFY_					0	0	0		PKHD1L1|p.E3949K|1|0.4|ENSG00000205038|chr8:109518322-109518322|G/A|missense_variant	PKHD1L1|p.E3949K|1|0.4|ENSG00000205038|chr8:109518322-109518322|G/A|missense_variant	PKHD1L1|p.E3949K|1|0.4|ENSG00000205038|chr8:109518322-109518322|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	644.7289428710938	2	643.816793	1285.61903	-0.48744	-0.00031382	0.28951	0.00018639	-0.19793	-0.00012743	643.8168461066492	57.753	1.2183	57.753	57.415	58.633	0					75	23	5	0	0	0	0.72773	1	20630	20630		18.373	18.373	1	39120000			41208	15189	30304	30544	40111	40111					-0.012352452559071025
QLTDETVSY	9	Unmodified	_QLTDETVSY_					0	0	0			REV__nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8	REV__nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8	MULTI-MSMS	A375_MHC_IP_R2	2	529.19287109375	2	528.248212	1054.48187	-1.0185	-0.00053803	0.067984	3.5912E-05	-0.95053	-0.00050212	528.2482169384033	29.667	1.2139	30.365	29.88	31.094	0.69872					51	23	3	0	0	0	0.61998	1	10171	10171		13.906	3.0821	1	19756000	+		41209	22859	30305	30545	40112	40112					-0.04319154135487224
QLTDLNVQL	9	Unmodified	_QLTDLNVQL_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-SECPEP	A375_MHC_IP_R1	1	522.690185546875	2	522.290214	1042.56587	-0.4572	-0.00023879	0.77222	0.00040332	0.31502	0.00016453	522.29068126686	102.99	1.1681	102.99	102.35	103.52	0					39	22	3	0	0	0	0.01091	1	37846	37846		96.111	39.934	1	4910900			41210	5505	30306	30546	40113	40113					0.04629421752088092
QLTDLNVQL	9	Unmodified	_QLTDLNVQL_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MATCH	A375_MHC_IP_R2	2		2	522.290214	1042.56587	-0.57205	-0.00029878	0.48012	0.00025076	-0.091927	-4.8012E-05	522.2904654604476	102.23	0.60924	103	102.67	103.28	0.76428	0.005295	-9.8696E-05	NaN	96.111	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4508900			41211	5505	30306	30546							0.04629421752088092
QLTHIKQIL	9	Unmodified	_QLTHIKQIL_					0	0	0			REV__ENSG00000120051|ENST00000369704|CFAP58	REV__ENSG00000120051|ENST00000369704|CFAP58	MSMS	A375_MHC_IP_R1	1	365.2770690917969	3	365.229119	1092.66553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.445	1	30.445	29.945	30.945	0								0	0	0	0.15386	1	9674	9674		15.248	0	1		+		41212	18111	30307	30547	40114	40114					0.12290284156688358
QLTLHYEEYH	10	Unmodified	_QLTLHYEEYH_					0	0	0			REV__ENSG00000186329|ENST00000334567|TMEM212	REV__ENSG00000186329|ENST00000334567|TMEM212	MULTI-SECPEP	A375_MHC_IP_R2	2	444.6507873535156	3	444.878815	1331.61462	-0.60033	-0.00026707	0.14688	6.5342E-05	-0.45346	-0.00020173	444.87887269709074	37.682	0.92331	38.456	38.124	39.047	0.77451					49	17	5	0	0	0	0.94269	1	13936	13936		1.5923	0.26264	1	67120000	+		41213	21963	30308	30548	40115	40115					-0.03792709678805295
QLTNSSLFY	9	Unmodified	_QLTNSSLFY_					0	0	0			REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1922607421875	2	536.769114	1071.52368	-1.0806	-0.00058004	-2.321	-0.0012459	-3.4016	-0.0018259	536.7683479494182	35.6	0.25363	36.364	36.233	36.486	0.76338					6	4	2	0	0	0	0.74412	1	12949	12949		14.838	1.3304	1	678910	+		41214	21317	30309	30549	40116	40116					-0.00922553656278069
QLTQTIVQLL	10	Unmodified	_QLTQTIVQLL_					0	0	0			REV__ENSG00000114841|ENST00000420323|DNAH1	REV__ENSG00000114841|ENST00000420323|DNAH1	MULTI-SECPEP	A375_MHC_IP_R2	2	579.1527709960938	2	578.850438	1155.68632	-0.16116	-9.3285E-05	0.51554	0.00029842	0.35438	0.00020513	578.8502208477353	67.822	0.35667	68.557	68.459	68.816	0.73511					8	6	2	0	0	0	0.85226	1	25756	25756		20.454	5.6154	1	516980	+		41215	17843	30310	30550	40117	40117					0.11470829745712763
QLTTGCEKW	9	Unmodified	_QLTTGCEKW_					0	0	0		ENSG00000138152|ENST00000260723|BTBD16;nc|ENSG00000138152|Q32M84-2|BTBD16	ENSG00000138152|ENST00000260723|BTBD16	ENSG00000138152|ENST00000260723|BTBD16	MULTI-SECPEP	A375_MHC_IP_R1	1	533.6547241210938	2	533.255317	1064.49608	-0.65022	-0.00034673	-0.66158	-0.00035279	-1.3118	-0.00069952	533.2550662661512	34.105	2.5377	34.105	33.445	35.982	0					86	49	3	0	0	0	0.62767	1	11588	11588		11.64	11.64	1	7932800			41216	4965	30311	30551	40118	40118					-0.03358780188182209
QLTVHHRPPQ	10	Unmodified	_QLTVHHRPPQ_					0	0	0		nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP	nc|ENSG00000171681|Q6VMQ6-5|ATF7IP	nc|ENSG00000171681|Q6VMQ6-5|ATF7IP	MULTI-MSMS	A375_MHC_IP_R1	1	405.27874755859375	3	404.891389	1211.65234	-0.55434	-0.00022445	0.48078	0.00019466	-0.073563	-2.9785E-05	404.8916376735676	19.447	0.63953	19.447	19.238	19.877	0					36	12	4	0	0	0	0.58757	2	4900	4830;4900		21.799	21.799	1	17015000			41217	7628	30312	30552	40119;40120	40120					0.0549784609731887
QLVDIIEKV	9	Unmodified	_QLVDIIEKV_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	A375_MHC_IP_R1	1	529.2180786132812	2	528.818607	1055.62266	-0.70411	-0.00037235	0.17512	9.2605E-05	-0.529	-0.00027974	528.8186419444755	94.659	1.5755	94.659	94.291	95.867	0					67	30	5	0	0	0	0.0095309	1	34727	34727		174.48	67.295	1	44706000			41218	4331	30313	30553	40121	40121					0.09707469308591499
QLVDIIEKV	9	Unmodified	_QLVDIIEKV_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-SECPEP	A375_MHC_IP_R2	2	529.2181396484375	2	528.818607	1055.62266	-0.3916	-0.00020709	-0.59155	-0.00031282	-0.98315	-0.00051991	528.8182509355541	93.751	1.3174	94.496	94.16	95.477	0.74474					59	25	4	0	0	0	0.0069175	1	35598	35598		162.31	72.179	1	36919000			41219	4331	30313	30553	40122	40122					0.09707469308591499
QLVEQKLRL	9	Unmodified	_QLVEQKLRL_					0	0	0			REV__ENST00000381496.7_1_10:321690-321876:-|nuORF	REV__ENST00000381496.7_1_10:321690-321876:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	375.9523620605469	3	376.236274	1125.68699	-0.031136	-1.1715E-05	0.058907	2.2163E-05	0.027771	1.0448E-05	376.236196121223	29.716	1.6557	29.716	29.403	31.059	0					56	32	2	0	0	0	0.26169	1	9370	9370		33.445	0.54714	1	16284000	+		41220	24235	30314	30554	40123	40123					0.12917669185412706
QLVHRTYFEE	10	Unmodified	_QLVHRTYFEE_					0	0	0			REV__ENSG00000108576|ENST00000650711|SLC6A4	REV__ENSG00000108576|ENST00000650711|SLC6A4	MULTI-SECPEP	A375_MHC_IP_R1	1	441.6578674316406	3	441.222693	1320.64625	-0.10308	-4.5479E-05	-0.26295	-0.00011602	-0.36603	-0.0001615	441.22248692957146	73.95	1.3686	73.95	73.235	74.604	0					40	26	2	0	0	0	0.93578	1	26669	26669		5.7834	3.1522	1	864230	+		41221	17539	30315	30555	40124	40124					-0.00124716924869972
QLVHRTYFEE	10	Unmodified	_QLVHRTYFEE_					0	0	0			REV__ENSG00000108576|ENST00000650711|SLC6A4	REV__ENSG00000108576|ENST00000650711|SLC6A4	MULTI-MATCH	A375_MHC_IP_R2	2		3	441.222693	1320.64625	-0.30721	-0.00013555	0.08699	3.8382E-05	-0.22022	-9.7165E-05	441.55702570493395	73.052	1.172	73.788	73.379	74.551	0.73541	-0.081076	0.00019789	NaN	5.7834	33	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	813340	+		41222	17539	30315	30555							-0.00124716924869972
QLVPALAKV	9	Unmodified	_QLVPALAKV_					0	0	0		nc|ENSG00000158161|Q99504-2|EYA3;nc|ENSG00000158161|Q99504-4|EYA3;nc|ENSG00000158161|Q99504-5|EYA3;ENSG00000158161|ENST00000373871|EYA3;nc|ENSG00000158161|Q99504-3|EYA3	nc|ENSG00000158161|Q99504-2|EYA3	nc|ENSG00000158161|Q99504-2|EYA3	MULTI-MSMS	A375_MHC_IP_R1	1	470.2046813964844	2	469.805303	937.596052	-0.14011	-6.5823E-05	-0.37822	-0.00017769	-0.51832	-0.00024351	469.8050161592678	71.651	0.70425	71.651	71.415	72.119	0					28	13	3	0	0	0	0.015701	1	26024	26024		88.954	42.933	1	17732000			41223	6291	30316	30556	40125	40125					0.12475825207934577
QLVQKRGD	8	Unmodified	_QLVQKRGD_					0	0	0			REV__ENSG00000205111|ENST00000699627|CDKL4	REV__ENSG00000205111|ENST00000699627|CDKL4	MULTI-MSMS	A375_MHC_IP_R2	2	472.66943359375	2	472.269616	942.524678	-0.49165	-0.00023219	0.52525	0.00024806	0.033598	1.5867E-05	472.26947939824595	118.7	0.40396	119.31	119.1	119.5	0.60909					9	7	2	0	0	0	0.7773	1	45160	45160		4.756	0	1	5718400	+		41224	22558	30317	30557	40126	40126					0.051117055032818826
QLVRDLLEV	9	Unmodified	_QLVRDLLEV_					0	0	0		ENSG00000109320|ENST00000226574|NFKB1;nc|ENSG00000109320|P19838|NFKB1;nc|ENSG00000109320|P19838-3|NFKB1	ENSG00000109320|ENST00000226574|NFKB1	ENSG00000109320|ENST00000226574|NFKB1	MULTI-SECPEP	A375_MHC_IP_R2	2	543.2215576171875	2	542.821681	1083.62881	-0.74342	-0.00040355	0.56761	0.00030811	-0.17581	-9.5435E-05	542.821801595492	92.39	1.2679	93.129	92.785	94.053	0.73901					44	24	4	0	0	0	0.006265	1	35114	35114		171.09	78.595	1	8515600			41225	2863	30318	30558	40127	40127					0.09033987540146882
QLVRRPLWK	9	Unmodified	_QLVRRPLWK_					0	0	0		ENST00000413593.5_2_7:66387044-66387173:+|nuORF	ENST00000413593.5_2_7:66387044-66387173:+|nuORF	ENST00000413593.5_2_7:66387044-66387173:+|nuORF	MSMS	A375_MHC_IP_R1	1	399.2903137207031	3	399.252258	1194.73495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.093	1	18.093	17.593	18.593	0								0	0	0	0.15486	1	4290	4290		0.26902	0	1				41226	11658	30319	30559	40128	40128					0.14536787896099668
QLVRSAWP	8	Unmodified	_QLVRSAWP_					0	0	0			REV__ENSG00000181418|ENST00000421952|DDN	REV__ENSG00000181418|ENST00000421952|DDN	MSMS	A375_MHC_IP_R1	1	478.6695861816406	2	478.769252	955.52395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.43	1	123.43	122.93	123.93	0								0	0	0	0.16876	1	46122	46122		5.7604	0.52976	1		+		41227	21649	30320	30560	40129	40129					0.044409108542254216
QLVWSLVEQ	9	Unmodified	_QLVWSLVEQ_					0	0	0			REV__nc|ENSG00000215193|Q7Z412-2|PEX26	REV__nc|ENSG00000215193|Q7Z412-2|PEX26	MULTI-MSMS	A375_MHC_IP_R2	2	367.9112548828125	3	367.86948	1100.58661	-0.24733	-9.0984E-05	0.26315	9.6805E-05	0.015824	5.8213E-06	367.8695515332174	34.009	2.0766	34.761	34.399	36.475	0.75225					86	40	5	0	0	0	0.64136	1	12897	12897		8.4443	0	1	199440000	+		41228	22671	30321	30561	40130	40130					0.04034012131751297
QLYEFDIKV	9	Unmodified	_QLYEFDIKV_					0	0	0		nc|ENSG00000135677|P15586-2|GNS;ENSG00000135677|ENST00000258145|GNS;HMGA2-GNS|1|fusion	nc|ENSG00000135677|P15586-2|GNS	nc|ENSG00000135677|P15586-2|GNS	MULTI-MSMS	A375_MHC_IP_R1	1	577.7167358398438	2	577.808239	1153.60193	-0.084803	-4.9E-05	0.068074	3.9334E-05	-0.016729	-9.6659E-06	577.8083062960917	97.009	0.75896	97.009	96.58	97.338	0					44	14	5	0	0	0	0.017116	1	35647	35647		103.82	53.891	1	19263000			41229	4703	30322	30562	40131	40131					0.03126878928947008
QLYEFDIKV	9	Unmodified	_QLYEFDIKV_					0	0	0		nc|ENSG00000135677|P15586-2|GNS;ENSG00000135677|ENST00000258145|GNS;HMGA2-GNS|1|fusion	nc|ENSG00000135677|P15586-2|GNS	nc|ENSG00000135677|P15586-2|GNS	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	577.808239	1153.60193	-0.19714	-0.00011391	-0.23452	-0.00013551	-0.43167	-0.00024942	577.8081655092972	96.23	0.55853	96.98	96.653	97.211	0.75045	-0.014541	-0.00011262	NaN	103.82	36	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14149000			41230	4703	30322	30562							0.03126878928947008
QLYEWQQRQQF	11	Unmodified	_QLYEWQQRQQF_					0	0	0		nc|ENSG00000166689|Q6IQ23|PLEKHA7;nc|ENSG00000166689|Q6IQ23-2|PLEKHA7;ENSG00000166689|ENST00000531066|PLEKHA7;nc|ENSG00000166689|Q6IQ23-3|PLEKHA7;ENST00000525781.5_1_11:16810636-16838952:-|nuORF	nc|ENSG00000166689|Q6IQ23|PLEKHA7	nc|ENSG00000166689|Q6IQ23|PLEKHA7	MSMS	A375_MHC_IP_R2	2	777.5509643554688	2	777.378414	1552.74228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.21	1	113.92	113.42	114.42	0.70985								0	0	0	0.16249	1	42682	42682		5.7319	0	1				41231	7102	30323	30563	40132	40132					-0.011985690847723163
QLYLHFNQI	9	Unmodified	_QLYLHFNQI_					0	0	0		ENSG00000130508|ENST00000252804|PXDN;PXDN|p.D1187Efs*3|1|0.08|ENSG00000130508|chr2:1648215-1648219|TCAGG/-|frameshift_variant;nc|ENSG00000130508|Q92626-2|PXDN	ENSG00000130508|ENST00000252804|PXDN	ENSG00000130508|ENST00000252804|PXDN	MULTI-SECPEP	A375_MHC_IP_R1	1	392.281494140625	3	392.545108	1174.61349	-0.16647	-6.5346E-05	-0.08701	-3.4155E-05	-0.25348	-9.9502E-05	392.5450594261152	26.819	0.35091	26.819	26.677	27.027	0					8	6	2	0	0	0	0.61758	1	8072	8072		16.566	0	1	1621400			41232	4247	30324	30564	40133	40133					0.03317120742963198
QLYMFIITWYF	11	Unmodified	_QLYMFIITWYF_					0	0	0			REV__OR5B3|p.G251W|1|0.23|ENSG00000172769|chr11:58402659-58402659|C/A|missense_variant	REV__OR5B3|p.G251W|1|0.23|ENSG00000172769|chr11:58402659-58402659|C/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	763.2820434570312	2	762.883424	1523.7523	-0.39103	-0.00029831	-0.61043	-0.00046569	-1.0015	-0.000764	762.8829250947983	97.095	0.60802	97.095	96.781	97.389	0					38	11	4	0	0	0	0.4583	2	35632	35632;35662		34.402	21.897	1	12042000	+		41233	27689	30325	30565	40134;40135	40134					0.011369025962494561
QLYMFIITWYF	11	Unmodified	_QLYMFIITWYF_					0	0	0			REV__OR5B3|p.G251W|1|0.23|ENSG00000172769|chr11:58402659-58402659|C/A|missense_variant	REV__OR5B3|p.G251W|1|0.23|ENSG00000172769|chr11:58402659-58402659|C/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	762.9482421875	2	762.883424	1523.7523	-0.39103	-0.00029831	-0.61043	-0.00046569	-1.0015	-0.000764	762.8829250947983	97.095	0.60802	97.095	96.781	97.389	0					38	11	4	0	0	0	0.84606	1	35780	35780		27.629	18.246	1	12042000	+		41234	27689	30325	30565	40136	40136					0.011369025962494561
QLYMFIITWYF	11	Unmodified	_QLYMFIITWYF_					0	0	0			REV__OR5B3|p.G251W|1|0.23|ENSG00000172769|chr11:58402659-58402659|C/A|missense_variant	REV__OR5B3|p.G251W|1|0.23|ENSG00000172769|chr11:58402659-58402659|C/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	763.2822875976562	2	762.883424	1523.7523	-0.96846	-0.00073882	-0.61455	-0.00046883	-1.583	-0.0012077	762.8831095901346	96.446	0.75822	97.202	96.911	97.67	0.75586					43	14	4	0	0	0	0.38771	2	36597	36580;36597		39.95	22.837	1	11943000	+		41235	27689	30325	30565	40137;40138	40138					0.011369025962494561
QLYMFIITWYF	11	Unmodified	_QLYMFIITWYF_					0	0	0			REV__OR5B3|p.G251W|1|0.23|ENSG00000172769|chr11:58402659-58402659|C/A|missense_variant	REV__OR5B3|p.G251W|1|0.23|ENSG00000172769|chr11:58402659-58402659|C/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	762.883424	1523.7523	-0.96846	-0.00073882	-0.61455	-0.00046883	-1.583	-0.0012077	762.8831095901346	96.446	0.75822	97.202	96.911	97.67	0.75586	0.053701	-4.3036E-06	NaN	39.95	43	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11943000	+		41236	27689	30325	30565							0.011369025962494561
QLYNQIIKL	9	Unmodified	_QLYNQIIKL_					0	0	0		ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-SECPEP	A375_MHC_IP_R1	1	567.2394409179688	2	566.839874	1131.66519	-0.25424	-0.00014411	-0.39344	-0.00022302	-0.64768	-0.00036713	566.8397141645578	88.623	0.56036	88.623	88.358	88.919	0					24	10	3	0	0	0	0.016541	1	32527	32527		131.27	45.626	1	8834600			41237	7900	30326	30566	40139	40139					0.10462864436840391
QLYNQIIKL	9	Unmodified	_QLYNQIIKL_					0	0	0		ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-SECPEP	A375_MHC_IP_R2	2	567.2396850585938	2	566.839874	1131.66519	-0.31098	-0.00017627	-0.2472	-0.00014012	-0.55817	-0.0003164	566.8396483053175	87.746	0.80923	88.478	88.066	88.875	0.7318					29	15	3	0	0	0	0.01147	1	33367	33367		99.799	26.831	1	7897900			41238	7900	30326	30566	40140	40140					0.10462864436840391
QLYNSLIFL	9	Unmodified	_QLYNSLIFL_					0	0	0		nc|ENSG00000135119|Q96EX2-3|RNFT2;ENST00000547718.5_1_12:117186478-117290514:+|nuORF;nc|ENSG00000135119|Q96EX2-5|RNFT2;ENSG00000135119|ENST00000257575|RNFT2	nc|ENSG00000135119|Q96EX2-3|RNFT2	nc|ENSG00000135119|Q96EX2-3|RNFT2	MULTI-MSMS	A375_MHC_IP_R2	2	1110.672119140625	1	1110.61937	1109.6121	0.14218	0.0001579	2.9681	0.0032965	3.1103	0.0034544	1110.623491888753	131.94	0.20084	132.13	132	132.2	0.18953					7	3	3	0	0	0	0.0094788	1	51876	51876		107.19	25.297	1	6932700			41239	4649	30327	30567	40141	40141					0.061674866541807205
QLYSGHLQV	9	Unmodified	_QLYSGHLQV_					0	0	0		ENST00000558801.1_1_15:84960100-84962592:-|nuORF;ENST00000558282.5_1_15:85734698-85737265:+|nuORF;ENST00000333235.3_1_Y:27624438-27626982:+|nuORF;ENST00000560634.1_1_15:84855599-84858179:+|nuORF	ENST00000558801.1_1_15:84960100-84962592:-|nuORF	ENST00000558801.1_1_15:84960100-84962592:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1769409179688	2	522.777274	1043.53999	-0.49017	-0.00025625	0.53288	0.00027858	0.042712	2.2329E-05	522.7776015417688	53.433	1.2163	53.433	52.997	54.213	0					46	23	3	0	0	0	0.0020135	1	19030	19030		185.05	116.97	1	39763000			41240	10786	30328	30568	40142	40142					0.019965723004588654
QLYSGHLQV	9	Unmodified	_QLYSGHLQV_					0	0	0		ENST00000558801.1_1_15:84960100-84962592:-|nuORF;ENST00000558282.5_1_15:85734698-85737265:+|nuORF;ENST00000333235.3_1_Y:27624438-27626982:+|nuORF;ENST00000560634.1_1_15:84855599-84858179:+|nuORF	ENST00000558801.1_1_15:84960100-84962592:-|nuORF	ENST00000558801.1_1_15:84960100-84962592:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	524.2911376953125	2	522.777274	1043.53999	-1.0431	-0.00054532	0.42124	0.00022021	-0.62188	-0.0003251	522.7775111549572	52.61	0.75965	53.363	53.083	53.843	0.75225					43	14	4	0	0	0	0.13797	1	19849	19849		43.858	9.4566	1	38697000			41241	10786	30328	30568	40143	40143					0.019965723004588654
QLYSGRLQV	9	Unmodified	_QLYSGRLQV_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.V1071Wfs*3|1|0.24|ENSG00000173546|chr15:75687855-75687856|-/GCCAC|frameshift_variant;ENST00000567704.5_1_15:78187063-78188741:+|nuORF	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R1	1	532.6981811523438	2	532.298373	1062.58219	-0.58288	-0.00031027	3.6689	0.0019529	3.086	0.0016427	532.2984609278647	54.643	1.4184	54.643	54.013	55.431	0					81	27	5	0	0	0	0.0098085	1	19525	19525		114.2	51.629	1	22737000			41242	7807	30329	30569	40144	40144					0.05340547708851773
QLYSRDYLRVS	11	Unmodified	_QLYSRDYLRVS_					0	0	0		ENST00000440469.1_1_3:196311312-196311396:+|nuORF	ENST00000440469.1_1_3:196311312-196311396:+|nuORF	ENST00000440469.1_1_3:196311312-196311396:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	467.1471252441406	3	467.249131	1398.72556	0.19745	9.2258E-05	2.4492	0.0011444	2.6466	0.0012366	467.2488551842633	49.259	0.60815	49.259	48.983	49.591	0					32	11	4	0	0	0	0.73111	1	17372	17372		7.846	1.2226	1	3626400			41243	11972	30330	30570	40145	40145					0.0421493002927491
QMAEIAVNA	9	Oxidation (M)	_QM(Oxidation (M))AEIAVNA_		QM(1)AEIAVNA		QM(72)AEIAVNA	0	0	1		ENST00000423695.6_1_5:10250480-10261980:+|nuORF;nc|ENSG00000150753|P48643-2|CCT5;ENSG00000150753|ENST00000280326|CCT5	ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENST00000423695.6_1_5:10250480-10261980:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	482.13372802734375	2	481.734217	961.453881	-0.15372	-7.4054E-05	-0.79884	-0.00038483	-0.95257	-0.00045888	481.73370890560017	42.866	0.86261	42.866	42.386	43.249	0					26	16	2	0	0	0	0.033557	1	14865	14865		71.922	41.286	1	3826500			41244	11762	30331	30571	40146	40146		454			-0.028387555965423417
QMAEIAVNA	9	Oxidation (M)	_QM(Oxidation (M))AEIAVNA_		QM(1)AEIAVNA		QM(89)AEIAVNA	0	0	1		ENST00000423695.6_1_5:10250480-10261980:+|nuORF;nc|ENSG00000150753|P48643-2|CCT5;ENSG00000150753|ENST00000280326|CCT5	ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENST00000423695.6_1_5:10250480-10261980:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	482.1335144042969	2	481.734217	961.453881	-0.51793	-0.0002495	-0.64669	-0.00031153	-1.1646	-0.00056104	481.7338158781973	42.115	0.71529	42.888	42.553	43.268	0.7724					27	13	3	0	0	0	0.015701	1	15644	15644		88.954	47.114	1	5427200			41245	11762	30331	30571	40147	40147		454			-0.028387555965423417
QMDDSHYSHY	10	Unmodified	_QMDDSHYSHY_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000481728.2_1_8:25209198-25222229:+|nuORF;ENST00000467709.6_1_8:25191660-25227073:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-SECPEP	A375_MHC_IP_R1	1	428.5645446777344	3	428.164627	1281.47205	0.079172	3.3899E-05	-0.44014	-0.00018845	-0.36097	-0.00015455	428.4986765185497	21.224	0.30371	21.224	21.048	21.352	0					12	5	3	0	0	0	0.94363	1	5544	5544		5.4027	4.1879	1	2231100			41246	5684	30332	30572	40148	40148					-0.1574266541247198
QMDDSHYSHY	10	Unmodified	_QMDDSHYSHY_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000481728.2_1_8:25209198-25222229:+|nuORF;ENST00000467709.6_1_8:25191660-25227073:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-SECPEP	A375_MHC_IP_R2	2	428.5643005371094	3	428.164627	1281.47205	-0.50028	-0.0002142	-0.018302	-7.8361E-06	-0.51858	-0.00022204	428.49900229762113	19.764	0.45552	20.374	20.044	20.499	0.61029					16	8	3	0	0	0	0.93041	1	6087	6087		7.9454	6.8356	1	2250500			41247	5684	30332	30572	40149	40149					-0.1574266541247198
QMDITVFKPF	10	Unmodified	_QMDITVFKPF_					0	0	0		GRHL1|p.R454Q|1|0.39|ENSG00000134317|chr2:9992046-9992046|G/A|missense_variant	GRHL1|p.R454Q|1|0.39|ENSG00000134317|chr2:9992046-9992046|G/A|missense_variant	GRHL1|p.R454Q|1|0.39|ENSG00000134317|chr2:9992046-9992046|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	408.6428527832031	3	409.21437	1224.62128	-0.10198	-4.1731E-05	1.3187	0.00053963	1.2167	0.00049789	409.5491121833073	25.408	0.20443	25.408	25.306	25.511	0					5	3	2	0	0	0	0.94269	1	7369	7369		3.3196	3.1798	1	1317000			41248	14078	30333	30573	40150	40150					0.017955119482166992
QMHQVRLREA	10	Unmodified	_QMHQVRLREA_					0	0	0			REV__ENSG00000164736|ENST00000297316|SOX17	REV__ENSG00000164736|ENST00000297316|SOX17	MULTI-MSMS	A375_MHC_IP_R2	2	633.7691040039062	2	634.338038	1266.66152	-0.81447	-0.00051665	1.0196	0.00064678	0.20514	0.00013013	634.3389739841908	130.05	0.9606	130.27	129.74	130.7	0.2142					23	14	4	0	0	0	0.72014	1	50992	50992		3.2813	0	1	23926000	+		41249	20512	30334	30574	40151	40151					0.03885871391366891
QMISRIEYI	9	Unmodified	_QMISRIEYI_					0	0	0		ENST00000578904.1_1_17:80208040-80213403:-|nuORF;CSNK1D|p.F206Sfs*22|1|0.59|ENSG00000141551|chr17:82252549-82252553|GTTGA/-|frameshift_variant;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENSG00000213923|ENST00000396832|CSNK1E	ENST00000578904.1_1_17:80208040-80213403:-|nuORF	ENST00000578904.1_1_17:80208040-80213403:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	577.2075805664062	2	576.807716	1151.60088	-0.17412	-0.00010044	1.4694	0.00084753	1.2952	0.0007471	576.808883830004	73.969	0.81248	73.969	73.74	74.553	0					19	15	2	0	0	0	0.13208	1	26970	26970		66.457	16.524	1	1887800			41250	676	30335	30575	40152	40152					0.031143412884148347
QMISRIEYV	9	Oxidation (M)	_QM(Oxidation (M))ISRIEYV_		QM(1)ISRIEYV		QM(62)ISRIEYV	0	0	1		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	MULTI-SECPEP	A375_MHC_IP_R1	1	578.1971435546875	2	577.797349	1153.58014	0.16978	9.8099E-05	-1.6424	-0.00094896	-1.4726	-0.00085086	577.7969834738078	49.508	0.66154	49.508	49.235	49.896	0					23	12	3	0	0	0	0.16595	1	17525	17525		61.602	25.558	1	2576600			41251	3174	30336	30576	40153	40153		151			0.00949750908716851
QMISRIEYV	9	Oxidation (M)	_QM(Oxidation (M))ISRIEYV_		QM(1)ISRIEYV		QM(70)ISRIEYV	0	0	1		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	MULTI-SECPEP	A375_MHC_IP_R2	2	578.1967163085938	2	577.797349	1153.58014	-0.26248	-0.00015166	-0.8948	-0.00051702	-1.1573	-0.00066867	577.7971544676834	48.732	0.66275	49.489	49.18	49.843	0.75736					20	12	2	0	0	0	0.11849	1	18284	18284		70.332	28.492	1	3306500			41252	3174	30336	30576	40154	40154		151			0.00949750908716851
QMISRIEYV	9	Unmodified	_QMISRIEYV_					0	0	0		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	MULTI-SECPEP	A375_MHC_IP_R2	2	570.1998291015625	2	569.799891	1137.58523	-0.29644	-0.00016891	0.47595	0.00027119	0.17951	0.00010229	569.8001658431333	62.902	0.55425	63.645	63.333	63.888	0.74263					21	10	3	0	0	0	0.13208	1	23854	23854		66.457	26.507	1	4195200			41253	3174	30336	30577	40155	40155					0.021940547713484193
QMLEETRQV	9	Oxidation (M)	_QM(Oxidation (M))LEETRQV_		QM(1)LEETRQV		QM(56)LEETRQV	0	0	1		ENSG00000198743|ENST00000381151|SLC5A3;SLC5A3|p.V696E|1|0.12|ENSG00000198743|chr21:34097285-34097285|T/A|missense_variant	ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	MULTI-SECPEP	A375_MHC_IP_R1	1	575.734619140625	2	575.282063	1148.54957	-0.2715	-0.00015619	0.60593	0.00034858	0.33443	0.00019239	575.281891825052	24.615	0.80807	24.615	24.245	25.053	0					26	15	3	0	0	0	0.061442	1	6968	6968		55.503	15.553	1	5459500			41254	9314	30337	30578	40156	40156		427			-0.018760274763280904
QMLEETRQV	9	Oxidation (M)	_QM(Oxidation (M))LEETRQV_		QM(1)LEETRQV		QM(46)LEETRQV	0	0	1		ENSG00000198743|ENST00000381151|SLC5A3;SLC5A3|p.V696E|1|0.12|ENSG00000198743|chr21:34097285-34097285|T/A|missense_variant	ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	MULTI-MSMS	A375_MHC_IP_R2	2	575.734619140625	2	575.282063	1148.54957	-0.44504	-0.00025602	1.7488	0.0010061	1.3038	0.00075005	575.7848830708855	23.897	0.5099	24.527	24.232	24.742	0.63014					21	9	3	0	0	0	0.12771	1	7722	7722		45.7	7.7256	1	6431400			41255	9314	30337	30578	40157	40157		427			-0.018760274763280904
QMNPQMVSV	9	Unmodified	_QMNPQMVSV_					0	0	0			REV__nc|ENSG00000275066|Q9UMZ2-6|SYNRG	REV__nc|ENSG00000275066|Q9UMZ2-6|SYNRG	MULTI-MSMS	A375_MHC_IP_R1	1	517.6441040039062	2	517.243895	1032.47324	-0.56618	-0.00029285	0.7476	0.00038669	0.18141	9.3836E-05	517.2441589044035	61.05	0.51003	61.05	60.821	61.331	0					18	9	3	0	0	0	0.35581	1	21976	21976		26.884	26.884	1	4262500	+		41256	22961	30338	30579	40158	40158					-0.04170122577284019
QMNPQMVSV	9	Unmodified	_QMNPQMVSV_					0	0	0			REV__nc|ENSG00000275066|Q9UMZ2-6|SYNRG	REV__nc|ENSG00000275066|Q9UMZ2-6|SYNRG	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	517.243895	1032.47324	-1.0538	-0.00054509	0.82449	0.00042646	-0.22934	-0.00011863	517.2441475688647	60.327	0.56253	61.072	60.801	61.364	0.74503	0.010932	5.4043E-05	NaN	26.884	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4238300	+		41257	22961	30338	30579							-0.04170122577284019
QMQEREKEHKR	11	Unmodified	_QMQEREKEHKR_					0	0	0			REV__ENSG00000072786|ENST00000176763|STK10	REV__ENSG00000072786|ENST00000176763|STK10	MULTI-MSMS	A375_MHC_IP_R2	2	500.6565246582031	3	500.256291	1497.74704	-0.49735	-0.0002488	-0.072537	-3.6287E-05	-0.56989	-0.00028509	500.25655368815353	133.45	1.1152	133.62	133.04	134.16	0.16487					56	21	4	0	0	0	0.73715	1	52475	52475		2.084	0.62885	1	5736500	+		41258	16611	30339	30580	40159	40159					0.018079917863360606
QMRQKHYYRSY	11	Unmodified	_QMRQKHYYRSY_					0	0	0		ENSG00000169306|ENST00000378993|IL1RAPL1	ENSG00000169306|ENST00000378993|IL1RAPL1	ENSG00000169306|ENST00000378993|IL1RAPL1	MSMS	A375_MHC_IP_R1	1	520.6763305664062	3	520.589382	1558.74632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.656	1	68.656	68.156	69.156	0								0	0	0	0.16337	1	24900	24900		0.40827	0.078994	1				41259	7399	30340	30581	40160	40160					-0.010708028627050226
QMYLYIQEV	9	Oxidation (M)	_QM(Oxidation (M))YLYIQEV_		QM(1)YLYIQEV		QM(82)YLYIQEV	0	0	1		ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	MULTI-SECPEP	A375_MHC_IP_R1	1	602.1914672851562	2	601.791732	1201.56891	-0.27264	-0.00016407	0.12032	7.2409E-05	-0.15231	-9.1661E-05	601.7918741311004	97.156	0.55569	97.156	96.934	97.49	0					14	10	2	0	0	0	0.04395	1	35708	35708		81.89	49.105	1	1533400			41260	9314	30341	30582	40161	40161		428			-0.0238107118541393
QMYLYIQEV	9	Oxidation (M)	_QM(Oxidation (M))YLYIQEV_		QM(1)YLYIQEV		QM(82)YLYIQEV	0	0	1		ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	MULTI-SECPEP	A375_MHC_IP_R2	2	602.1923217773438	2	601.791732	1201.56891	-0.54964	-0.00033077	-0.58464	-0.00035183	-1.1343	-0.0006826	602.2927135828331	96.382	0.45576	97.132	97.008	97.464	0.75044					16	8	2	0	0	0	0.059859	1	36641	36641		81.89	26.387	1	1274300			41261	9314	30341	30582	40162	40162		428			-0.0238107118541393
QMYSWSFSF	9	Unmodified	_QMYSWSFSF_					0	0	0			REV__ENST00000531757.5_1_11:18354712-18357405:+|nuORF	REV__ENST00000531757.5_1_11:18354712-18357405:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	395.23529052734375	3	394.83567	1181.48518	-0.66691	-0.00026332	-0.87932	-0.00034719	-1.5462	-0.00061051	395.16941915104	28.563	0.25282	29.262	29.08	29.333	0.69872					6	4	2	0	0	0	0.72507	1	9888	9888		2.7352	0	1	8210300	+		41262	25855	30342	30583	40163	40163					-0.09830182562450318
QNCGACQPI	9	Unmodified	_QNCGACQPI_					0	0	0			REV__ENST00000558139.1_1_1:180199637-180217592:+|nuORF	REV__ENST00000558139.1_1_1:180199637-180217592:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	467.6191711425781	2	467.199487	932.384421	-0.49766	-0.00023251	-0.40903	-0.0001911	-0.9067	-0.00042361	467.1994428813392	32.805	1.6168	32.805	32.282	33.898	0					89	31	5	0	0	0	0.64808	1	10779	10779		11.64	0	1	101080000	+		41263	18162	30343	30584	40164	40164					-0.08447537816959994
QNCGACQPI	9	Unmodified	_QNCGACQPI_					0	0	0			REV__ENST00000558139.1_1_1:180199637-180217592:+|nuORF	REV__ENST00000558139.1_1_1:180199637-180217592:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	467.5990905761719	2	467.199487	932.384421	-0.64878	-0.00030311	-0.44758	-0.00020911	-1.0964	-0.00051222	467.19957053617077	32.042	1.8807	32.779	32.3	34.181	0.73691					86	36	5	0	0	0	0.64808	2	11484	11484;11535		11.64	0	1	103340000	+		41264	18162	30343	30584	40165;40166	40165					-0.08447537816959994
QNDKDSNFI	9	Unmodified	_QNDKDSNFI_					0	0	0			REV__ENSG00000136011|ENST00000388887|STAB2	REV__ENSG00000136011|ENST00000388887|STAB2	MSMS	A375_MHC_IP_R2	2	540.6714477539062	2	540.751453	1079.48835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.198	1	44.968	44.468	45.468	0.7691								0	0	0	0.15142	1	16491	16491		19.257	6.2145	1		+		41265	18909	30344	30585	40167	40167					-0.04821216184109289
QNDLQEFF	8	Unmodified	_QNDLQEFF_					0	0	0		ENSG00000197275|ENST00000336148|RAD54B;ENST00000523192.1_1_8:95405967-95411786:-|nuORF	ENSG00000197275|ENST00000336148|RAD54B	ENSG00000197275|ENST00000336148|RAD54B	MULTI-MSMS	A375_MHC_IP_R2	2	521.7001342773438	2	520.737814	1039.46108	-0.55033	-0.00028658	-0.2364	-0.0001231	-0.78674	-0.00040968	520.7376627744941	42.913	0.55606	43.685	43.421	43.977	0.7724					26	10	3	0	0	0	0.74466	1	16021	16021		21.747	0.20967	1	5556300			41266	9139	30345	30586	40168	40168					-0.057076997244848826
QNDPEGPKGLL	11	Unmodified	_QNDPEGPKGLL_					0	0	0		COL24A1|p.G783D|1|0.18|ENSG00000171502|chr1:85987617-85987617|C/T|missense_variant	COL24A1|p.G783D|1|0.18|ENSG00000171502|chr1:85987617-85987617|C/T|missense_variant	COL24A1|p.G783D|1|0.18|ENSG00000171502|chr1:85987617-85987617|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	389.872314453125	3	389.87166	1166.59315	-0.025488	-9.937E-06	-0.70489	-0.00027482	-0.73038	-0.00028475	389.8712982878057	25.791	0.81168	25.791	25.46	26.271	0					30	15	3	0	0	0	0.59391	1	7651	7651		14.838	0	1	15332000			41267	556	30346	30587	40169	40169					0.016519052924877542
QNDVSAHV	8	Unmodified	_QNDVSAHV_					0	0	0		ENSG00000110427|ENST00000658780|KIAA1549L;nc|ENSG00000110427|Q6ZVL6|KIAA1549L;nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L	ENSG00000110427|ENST00000658780|KIAA1549L	ENSG00000110427|ENST00000658780|KIAA1549L	MSMS	A375_MHC_IP_R1	1	435.1372985839844	2	435.209224	868.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.655	1	20.655	20.155	21.155	0								0	0	0	0.16876	1	5334	5334		5.7604	0	1				41268	2934	30347	30588	40170	40170					-0.03557122210190755
QNENLRKYYKY	11	Unmodified	_QNENLRKYYKY_					0	0	0		tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1	tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1	tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1	MSMS	A375_MHC_IP_R2	2	506.9273681640625	3	506.928169	1517.76268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.32	1	28.998	28.498	29.498	0.67857								0	0	0	0.16336	1	9763	9763		1.2148	0	1				41269	29916	30348	30589	40171	40171					0.024506015750603183
QNEVLPGA	8	Unmodified	_QNEVLPGA_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-SECPEP	A375_MHC_IP_R1	1	827.2083129882812	1	827.425758	826.418482	0.014099	1.1666E-05	-0.48542	-0.00040165	-0.47132	-0.00038998	827.4252846197195	38.857	0.35434	38.857	38.679	39.033	0					9	6	2	0	0	0	0.81376	1	13211	13211		39.957	21.822	1	3402600			41270	1419	30349	30590	40172	40172					-0.0016705006204347228
QNEVLPGA	8	Unmodified	_QNEVLPGA_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-SECPEP	A375_MHC_IP_R2	2	827.208251953125	1	827.425758	826.418482	-1.0266	-0.00084941	0.58563	0.00048457	-0.44094	-0.00036484	827.4260760851771	38.025	0.31008	38.799	38.636	38.946	0.77451					8	5	2	0	0	0	0.87643	1	13978	13978		32.305	10.559	1	1887500			41271	1419	30349	30590	40173	40173					-0.0016705006204347228
QNFFSQTPI	9	Unmodified	_QNFFSQTPI_					0	0	0		nc|ENSG00000143624|Q68E01-4|INTS3;ENSG00000143624|ENST00000318967|INTS3;nc|ENSG00000143624|Q68E01|INTS3	nc|ENSG00000143624|Q68E01-4|INTS3	nc|ENSG00000143624|Q68E01-4|INTS3	MULTI-SECPEP	A375_MHC_IP_R1	1	541.6690063476562	2	541.269281	1080.52401	-0.56792	-0.0003074	0.52358	0.0002834	-0.044341	-2.4E-05	541.2694859091988	53.58	1.4691	53.58	52.946	54.415	0					72	28	4	0	0	0	0.39388	1	18995	18995		25.399	0	1	24582000			41272	5416	30350	30591	40174	40174					-0.01303133936426093
QNFHPKCY	8	Unmodified	_QNFHPKCY_					0	0	0			REV__LIMA1|p.A544Dfs*11|1|0.27|ENSG00000050405|chr12:50177700-50177713|CCCTTCCTCCAAGG/-|frameshift_variant	REV__LIMA1|p.A544Dfs*11|1|0.27|ENSG00000050405|chr12:50177700-50177713|CCCTTCCTCCAAGG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	519.6372680664062	2	518.737094	1035.45964	-0.4772	-0.00024754	0.74706	0.00038753	0.26986	0.00013999	518.7382021997137	34.835	3.549	34.835	32.535	36.084	0					150	69	3	0	0	0	0.7779	1	10720	10720		2.5775	0.27475	1	93373000	+		41273	16387	30351	30592	40175	40175					-0.05667612294223545
QNFQDNQFQ	9	Unmodified	_QNFQDNQFQ_					0	0	0		nc|ENSG00000148346|P80188-2|LCN2;ENSG00000148346|ENST00000277480|LCN2	nc|ENSG00000148346|P80188-2|LCN2	nc|ENSG00000148346|P80188-2|LCN2	MULTI-SECPEP	A375_MHC_IP_R2	2	585.2031860351562	2	584.754527	1167.4945	-0.64014	-0.00037432	-0.39043	-0.00022831	-1.0306	-0.00060263	584.7544230272226	37.8	0.40952	38.575	38.382	38.791	0.77451					11	7	2	0	0	0	0.76187	1	13775	13775		7.2892	3.6927	1	2752600			41274	5736	30352	30593	40176	40176					-0.08254697952588685
QNFSESQEV	9	Unmodified	_QNFSESQEV_					0	0	0		ENSG00000125812|ENST00000338121|GZF1	ENSG00000125812|ENST00000338121|GZF1	ENSG00000125812|ENST00000338121|GZF1	MULTI-MSMS	A375_MHC_IP_R2	2	534.6344604492188	2	534.235635	1066.45672	-1.0706	-0.00057197	-0.49831	-0.00026622	-1.569	-0.00083819	534.2355542234184	60.71	0.45744	61.455	61.16	61.618	0.74503					17	8	3	0	0	0	0.55818	1	22990	22990		16.942	6.1184	1	3495900			41275	3991	30353	30594	40177	40177					-0.07385208938035248
QNFVSVFGTVA	11	Unmodified	_QNFVSVFGTVA_					0	0	0		ENSG00000182836|ENST00000377801|PLCXD3	ENSG00000182836|ENST00000377801|PLCXD3	ENSG00000182836|ENST00000377801|PLCXD3	MULTI-MSMS	A375_MHC_IP_R2	2	390.6046447753906	3	390.204751	1167.59242	-0.46231	-0.0001804	0.6605	0.00025773	0.19819	7.7333E-05	390.20494011889195	37.557	0.87211	38.328	38.07	38.942	0.7709					34	16	4	0	0	0	0.60747	1	13738	13738		13.519	0	1	10966000			41276	8440	30354	30595	40178	40178					0.015331106434359754
QNGKSPSITF	10	Unmodified	_QNGKSPSITF_					0	0	0		ENSG00000197859|ENST00000651351|ADAMTSL2	ENSG00000197859|ENST00000651351|ADAMTSL2	ENSG00000197859|ENST00000651351|ADAMTSL2	MULTI-MSMS	A375_MHC_IP_R1	1	539.2081298828125	2	539.780013	1077.54547	-0.70389	-0.00037995	-0.66331	-0.00035804	-1.3672	-0.00073799	539.7789388530474	41.992	0.6627	41.992	41.622	42.285	0					25	12	3	0	0	0	0.6806	1	14409	14409		14.838	0	1	8564700			41277	9201	30355	30596	40179	40179					0.009802510922554575
QNHQRLHTGE	10	Unmodified	_QNHQRLHTGE_					0	0	0		ENSG00000170265|ENST00000610704|ZNF282	ENSG00000170265|ENST00000610704|ZNF282	ENSG00000170265|ENST00000610704|ZNF282	MSMS	A375_MHC_IP_R1	1	610.5833740234375	2	610.299967	1218.58538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.341	1	78.341	77.841	78.841	0								0	0	0	0.15465	1	28590	28590		5.7319	0	1				41278	7486	30356	30597	40180	40180					-0.015168091844316223
QNIRKSKKKKR	11	Unmodified	_QNIRKSKKKKR_					0	0	0		ENSG00000160818|ENST00000368232|GPATCH4;nc|ENSG00000160818|Q5T3I0-3|GPATCH4	ENSG00000160818|ENST00000368232|GPATCH4	ENSG00000160818|ENST00000368232|GPATCH4	MSMS	A375_MHC_IP_R1	1	707.4628295898438	2	707.459876	1412.9052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.603	1	66.603	66.103	67.103	0								0	0	0	0.16307	1	24122	24122		2.7352	1.4057	1				41279	6445	30357	30598	40181	40181					0.2152627882771867
QNKEHNVQ	8	Unmodified	_QNKEHNVQ_					0	0	0			REV__nc|ENSG00000156515|P19367-4|HK1	REV__nc|ENSG00000156515|P19367-4|HK1	MULTI-MSMS	A375_MHC_IP_R1	1	500.21575927734375	2	498.746505	995.478456	-0.49935	-0.00024905	1.2405	0.0006187	0.74116	0.00036965	498.747703463637	87.055	0.96425	87.055	86.629	87.593	0					43	18	4	0	0	0	0.75322	1	31931	31931		19.439	1.304	1	4226700	+		41280	19987	30358	30599	40182	40182					-0.01946359398812092
QNKKEAEKI	9	Unmodified	_QNKKEAEKI_					0	0	0		nc|ENSG00000145779|O95379-3|TNFAIP8;nc|ENSG00000145779|O95379-2|TNFAIP8;ENSG00000145779|ENST00000504771|TNFAIP8;ENST00000415806.2_1_5:118727135-118729073:+|nuORF;nc|ENSG00000145779|O95379-4|TNFAIP8	nc|ENSG00000145779|O95379-3|TNFAIP8	nc|ENSG00000145779|O95379-3|TNFAIP8	MULTI-MSMS	A375_MHC_IP_R2	2	544.7086181640625	2	544.308938	1086.60332	-0.86043	-0.00046834	-0.22131	-0.00012046	-1.0817	-0.0005888	544.30871858478	129.06	1.6176	129.3	128.91	130.53	0.23946					49	31	2	0	0	0	0.71416	1	50648	50648		5.7319	5.7319	1	33948000			41281	5580	30359	30600	40183	40183					0.06348513017701407
QNKKEAEKI	9	Unmodified	_QNKKEAEKI_					0	0	0		nc|ENSG00000145779|O95379-3|TNFAIP8;nc|ENSG00000145779|O95379-2|TNFAIP8;ENSG00000145779|ENST00000504771|TNFAIP8;ENST00000415806.2_1_5:118727135-118729073:+|nuORF;nc|ENSG00000145779|O95379-4|TNFAIP8	nc|ENSG00000145779|O95379-3|TNFAIP8	nc|ENSG00000145779|O95379-3|TNFAIP8	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	544.308938	1086.60332	-0.86043	-0.00046834	-0.22131	-0.00012046	-1.0817	-0.0005888	544.30871858478	129.06	1.6176	129.3	128.91	130.53	0.23946	0.091956	-4.7149E-05	NaN	5.7319	49	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33948000			41282	5580	30359	30600							0.06348513017701407
QNLDTYWGF	9	Unmodified	_QNLDTYWGF_					0	0	0			REV__nc|ENSG00000182903|Q8TF20|ZNF721	REV__nc|ENSG00000182903|Q8TF20|ZNF721	MULTI-SECPEP	A375_MHC_IP_R2	2	573.003662109375	2	572.258914	1142.50327	-1.0022	-0.00057349	-3.422	-0.0019583	-4.4242	-0.0025318	572.2573008319773	29.513	0.30353	30.212	30.032	30.335	0.69872					6	5	2	0	0	0	0.60917	1	10262	10262		19.257	6.2145	1	1496300	+		41283	21717	30360	30601	40184	40184					-0.06227724316113381
QNLEEILWEER	11	Unmodified	_QNLEEILWEER_					0	0	0		ENST00000422732.2_10:47098417-47099340:-|nuORF	ENST00000422732.2_10:47098417-47099340:-|nuORF	ENST00000422732.2_10:47098417-47099340:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	729.85009765625	2	729.864805	1457.71506	-0.53579	-0.00039105	-0.26167	-0.00019098	-0.79746	-0.00058204	729.8645393928005	87.929	1.0692	87.929	87.39	88.46	0					42	20	4	0	0	0	0.53677	1	32273	32273		28.234	3.3521	1	20313000			41284	11750	30361	30602	40185	40185					0.004509025842025949
QNLEYYSISCW	11	Unmodified	_QNLEYYSISCW_					0	0	0			REV__nc|ENSG00000166949|P84022-4|SMAD3	REV__nc|ENSG00000166949|P84022-4|SMAD3	MULTI-SECPEP	A375_MHC_IP_R1	1	703.707275390625	2	703.308277	1404.602	-0.53258	-0.00037457	-1.0005	-0.00070367	-1.5331	-0.0010782	703.3073932024329	51.111	0.66044	51.111	50.764	51.424	0					24	12	3	0	0	0	0.98524	1	18122	18122		10.8	8.7135	1	3555600	+		41285	20721	30362	30603	40186	40186					-0.0841148913334564
QNLGIINEDP	10	Unmodified	_QNLGIINEDP_					0	0	0		nc|ENSG00000111199|Q9HBA0-6|TRPV4;nc|ENSG00000111199|Q9HBA0-2|TRPV4;nc|ENSG00000111199|Q9HBA0-4|TRPV4;nc|ENSG00000111199|Q9HBA0-5|TRPV4;nc|ENSG00000111199|Q9HBA0-3|TRPV4;ENSG00000111199|ENST00000261740|TRPV4	nc|ENSG00000111199|Q9HBA0-6|TRPV4	nc|ENSG00000111199|Q9HBA0-6|TRPV4	MULTI-SECPEP	A375_MHC_IP_R1	1	556.160400390625	2	556.782753	1111.55095	-0.34809	-0.00019381	-0.26806	-0.00014925	-0.61614	-0.00034306	556.7823601166104	53.902	0.50634	53.902	53.707	54.213	0					12	9	2	0	0	0	0.90513	1	19238	19238		8.1555	0	1	1090000			41286	2970	30363	30604	40187	40187					-0.00036070115902475663
QNLRWQKEVE	10	Unmodified	_QNLRWQKEVE_					0	0	0			REV__ENSG00000171840|ENST00000305108|NINJ2	REV__ENSG00000171840|ENST00000305108|NINJ2	MSMS	A375_MHC_IP_R2	2	665.4120483398438	2	665.349126	1328.6837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.58	1	78.323	77.823	78.823	0.74293								0	0	0	0.15353	1	29459	29459		9.3831	3.1773	1		+		41287	21100	30364	30605	40188	40188					0.03250374340723283
QNLYIWRFRSR	11	Unmodified	_QNLYIWRFRSR_					0	0	0		ENST00000521082.5_1_7:23205510-23207476:+|nuORF	ENST00000521082.5_1_7:23205510-23207476:+|nuORF	ENST00000521082.5_1_7:23205510-23207476:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	514.3507080078125	3	513.616148	1537.82661	-0.7702	-0.00039559	0.78613	0.00040377	0.01593	8.1817E-06	513.6165737339501	30.392	0.40523	31.111	30.911	31.317	0.71857					17	7	3	0	0	0	0.73698	1	10683	10683		2.2527	0.32522	1	7202000			41288	13005	30365	30606	40189	40189					0.07921426522625552
QNMEFHRHRTR	11	Unmodified	_QNMEFHRHRTR_					0	0	0			REV__ENST00000565700.1_1_16:84494217-84494358:-|nuORF	REV__ENST00000565700.1_1_16:84494217-84494358:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	504.9851379394531	3	504.584742	1510.7324	-0.6131	-0.00030936	0.86297	0.00043544	0.24987	0.00012608	504.58510339142015	42.781	0.50665	43.553	43.268	43.775	0.7724					21	9	3	0	0	0	0.73672	1	15917	15917		1.0136	0.55906	1	4820400	+		41289	26233	30366	30607	40190	40190					-0.002540355711516895
QNMVGELNW	9	Unmodified	_QNMVGELNW_					0	0	0			REV__TRPM3|p.I977*|1|0.92|ENSG00000083067|chr9:70598478-70598502|GGAGACGGATATACCAGTAAATGAT/-|frameshift_variant	REV__TRPM3|p.I977*|1|0.92|ENSG00000083067|chr9:70598478-70598502|GGAGACGGATATACCAGTAAATGAT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	546.15234375	2	545.752941	1089.49133	-1.3397	-0.00073113	0.02724	1.4866E-05	-1.3124	-0.00071627	545.7527826171092	37.229	0.61074	38	37.716	38.327	0.7709					20	11	3	0	0	0	0.59266	1	13626	13626		15.248	2.206	1	4890200	+		41290	16797	30367	30608	40191	40191					-0.049836643309163264
QNPISAIPARR	11	Unmodified	_QNPISAIPARR_					0	0	0		ENSG00000213171|ENST00000368820|LINGO4	ENSG00000213171|ENST00000368820|LINGO4	ENSG00000213171|ENST00000368820|LINGO4	MULTI-SECPEP	A375_MHC_IP_R1	1	612.2554931640625	2	611.854378	1221.6942	-0.68854	-0.00042128	3.8139	0.0023336	3.1254	0.0019123	611.8565363517024	144.22	0.23755	144.22	144.16	144.4	0					7	4	2	0	0	0	0.99791	1	55333	55333		4.897	1.3005	1	630890			41291	9556	30368	30609	40192	40192					0.09222401785837064
QNPSGERV	8	Unmodified	_QNPSGERV_					0	0	0		FN1|p.S1621Rfs*10|1|0.25|ENSG00000115414|chr2:215382240-215382241|-/CT|frameshift_variant	FN1|p.S1621Rfs*10|1|0.25|ENSG00000115414|chr2:215382240-215382241|-/CT|frameshift_variant	FN1|p.S1621Rfs*10|1|0.25|ENSG00000115414|chr2:215382240-215382241|-/CT|frameshift_variant	MSMS	A375_MHC_IP_R1	1	443.6213073730469	2	443.722498	885.430444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.034	1	46.034	45.534	46.534	0								0	0	0	0.16876	1	16133	16133		13.906	3.0821	1				41292	14009	30369	30610	40193	40193					-0.01685433318846208
QNQRLHRRREH	11	Unmodified	_QNQRLHRRREH_					0	0	0			REV__ENSG00000198844|ENST00000361926|ARHGEF15	REV__ENSG00000198844|ENST00000361926|ARHGEF15	MULTI-MSMS	A375_MHC_IP_R1	1	765.8165283203125	2	765.417063	1528.81957	-0.75287	-0.00057626	-0.052812	-4.0423E-05	-0.80568	-0.00061668	765.416773718012	133.99	0.5081	133.99	133.76	134.27	0					13	9	2	0	0	0	0.73809	1	51684	51684		1.1933	0.84271	1	2422100	+		41293	22431	30370	30611	40194	40194					0.07631506694769996
QNQRLHRRREH	11	Unmodified	_QNQRLHRRREH_					0	0	0			REV__ENSG00000198844|ENST00000361926|ARHGEF15	REV__ENSG00000198844|ENST00000361926|ARHGEF15	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	765.417063	1528.81957	-0.82412	-0.0006308	-0.29063	-0.00022245	-1.1147	-0.00085325	765.9183998007618	134.12	0.66554	134.28	133.8	134.47	0.16487	0.14866	-0.00026956	NaN	1.1933	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2055700	+		41294	22431	30370	30611							0.07631506694769996
QNQSQDWCLLY	11	Unmodified	_QNQSQDWCLLY_					0	0	0			REV__nc|ENSG00000140688|Q96GQ5-2|RUSF1	REV__nc|ENSG00000140688|Q96GQ5-2|RUSF1	MULTI-MSMS	A375_MHC_IP_R2	2	466.94329833984375	3	466.543326	1396.60815	-1.0622	-0.00049555	0.46192	0.00021551	-0.60025	-0.00028004	466.54341080175	26.147	0.25434	26.807	26.653	26.907	0.65992					8	4	2	0	0	0	0.73781	1	8840	8840		1.4551	0	1	3179700	+		41295	19227	30371	30612	40195	40195					-0.07428970901833054
QNQYIHRVRSC	11	Unmodified	_QNQYIHRVRSC_					0	0	0			REV__GALNT15|p.G416R|1|0.42|ENSG00000131386|chr3:16212617-16212617|G/A|missense_variant	REV__GALNT15|p.G416R|1|0.42|ENSG00000131386|chr3:16212617-16212617|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	468.4662170410156	3	468.57021	1402.6888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.525	1	24.155	23.655	24.655	0.63014								0	0	0	0.16336	1	7588	7588		1.2148	0.20126	1		+		41296	26664	30372	30613	40196	40196					0.003563549317277648
QNRKYRQFLNY	11	Unmodified	_QNRKYRQFLNY_					0	0	0			REV__ENSG00000145555|ENST00000513610|MYO10	REV__ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	A375_MHC_IP_R1	1	510.66339111328125	3	510.603908	1528.78989	-0.40262	-0.00020558	2.0745	0.0010593	1.6719	0.00085369	510.939477867072	57.237	0.20457	57.237	57.109	57.313	0					5	3	2	0	0	0	0.73795	1	20551	20551		1.3296	0.31607	1	605230	+		41297	19480	30373	30614	40197	40197					0.046651299060840756
QNSKLNLLV	9	Unmodified	_QNSKLNLLV_					0	0	0			REV__ENSG00000135900|ENST00000258383|MRPL44	REV__ENSG00000135900|ENST00000258383|MRPL44	MULTI-SECPEP	A375_MHC_IP_R2	2	515.207763671875	2	514.808574	1027.60259	-0.934	-0.00048083	-0.87824	-0.00045212	-1.8122	-0.00093295	514.8083816399156	49.112	0.76208	49.869	49.485	50.247	0.75737					28	13	3	0	0	0	0.31606	1	18401	18401		39.95	1.7741	1	3518900	+		41298	18895	30374	30615	40198	40198					0.08989718368638933
QNSKLNLLV	9	Unmodified	_QNSKLNLLV_					0	0	0			REV__ENSG00000135900|ENST00000258383|MRPL44	REV__ENSG00000135900|ENST00000258383|MRPL44	MULTI-MATCH	A375_MHC_IP_R1	1		2	514.808574	1027.60259	-0.41805	-0.00021521	-1.3405	-0.00069012	-1.7586	-0.00090534	514.8080916606724	50.058	0.66469	50.058	49.692	50.357	0	0.094366	-0.00025931	NaN	39.95	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3824300	+		41299	18895	30374	30615							0.08989718368638933
QNVDLSSNFY	10	Unmodified	_QNVDLSSNFY_					0	0	0		ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MULTI-MSMS	A375_MHC_IP_R1	1	593.69287109375	2	593.772385	1185.53022	-0.24629	-0.00014624	0.20139	0.00011958	-0.044901	-2.6661E-05	593.7724352845521	54.389	0.86015	54.389	54.013	54.873	0					47	16	4	0	0	0	0.60608	1	19323	19323		20.415	0	1	38152000			41300	3082	30375	30616	40199	40199					-0.0551266049556034
QNYGQFRKQH	10	Unmodified	_QNYGQFRKQH_					0	0	0			REV__ENST00000555097.1_2_14:58878632-58893853:-|nuORF	REV__ENST00000555097.1_2_14:58878632-58893853:-|nuORF	MSMS	A375_MHC_IP_R2	2	435.6861572265625	3	435.886415	1304.63742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.912	1	16.5	16	17	0.58774								0	0	0	0.15629	1	4735	4735		0.13989	0.017027	1		+		41301	26093	30376	30617	40200	40200					-0.0027164577068106155
QNYLLFTKW	9	Unmodified	_QNYLLFTKW_					0	0	0			REV__nc|ENSG00000086991|Q9NPH5-3|NOX4	REV__nc|ENSG00000086991|Q9NPH5-3|NOX4	MULTI-MSMS	A375_MHC_IP_R1	1	405.6197814941406	3	404.885241	1211.63389	-0.54683	-0.0002214	0.4832	0.00019564	-0.06363	-2.5763E-05	404.88535663312683	65.523	0.51141	65.523	65.257	65.768	0					21	9	3	0	0	0	0.44183	1	23747	23747		22.658	5.6095	1	2282000	+		41302	15683	30377	30618	40201	40201					0.036542914027450024
QPAKEDPGP	9	Unmodified	_QPAKEDPGP_					0	0	0			REV__ENSG00000173404|ENST00000310227|INSM1	REV__ENSG00000173404|ENST00000310227|INSM1	MSMS	A375_MHC_IP_R2	2	469.6642761230469	2	469.732532	937.45051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.3	1	110.05	109.55	110.55	0.74684								0	0	0	0.15486	1	41251	41251		6.2058	0.47393	1		+		41303	21219	30378	30619	40202	40202					-0.02071682378903006
QPATRHPSL	9	Unmodified	_QPATRHPSL_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000554557.5_1_14:68248216-68272009:-|nuORF;nc|ENSG00000072121|Q68DK2-4|ZFYVE26;ENST00000557407.1_1_14:68264347-68282710:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-SECPEP	A375_MHC_IP_R2	2	503.6713562011719	2	503.775065	1005.53558	-0.69581	-0.00035053	-0.23163	-0.00011669	-0.92744	-0.00046722	503.77460130299886	31.086	0.71354	31.805	31.618	32.332	0.71857					22	13	2	0	0	0	0.60917	1	11128	11128		19.257	1.122	1	1486300			41304	1530	30379	30620	40203	40203					0.03303107877547973
QPAWWEGCT	9	Unmodified	_QPAWWEGCT_					0	0	0		ENST00000591390.1_1_19:640215-640473:+|nuORF	ENST00000591390.1_1_19:640215-640473:+|nuORF	ENST00000591390.1_1_19:640215-640473:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	539.166259765625	2	539.226559	1076.43857	-0.49892	-0.00026903	-1.7148	-0.00092464	-2.2137	-0.0011937	539.2269208031757	111.28	0.41124	111.28	111.1	111.52	0					12	7	2	0	0	0	0.60101	1	40816	40816		14.838	0.93222	1	713300			41305	13800	30380	30621	40204	40204					-0.09659622393746758
QPAWWEGCT	9	Unmodified	_QPAWWEGCT_					0	0	0		ENST00000591390.1_1_19:640215-640473:+|nuORF	ENST00000591390.1_1_19:640215-640473:+|nuORF	ENST00000591390.1_1_19:640215-640473:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	539.226559	1076.43857	-0.69345	-0.00037393	-2.9376	-0.001584	-3.6311	-0.001958	539.7262654620341	110.51	0.35845	111.24	111.04	111.4	0.73692	-0.021057	-9.3167E-05	NaN	14.838	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	741520			41306	13800	30380	30621							-0.09659622393746758
QPCGTAISERW	11	Unmodified	_QPCGTAISERW_					0	0	0		chr8:95124882-95154031|98|14.04|0.0|12.2|+|0|TE_info:THE1A,THE1A_dup2225,ERVL-MaLR,LTR,donor,+,95124607,95124882|None,PLEKHF2|5;chr8:95122959-95154031|141|21.42|0.06|8.44|+|0|TE_info:THE1A,THE1A_dup2224,ERVL-MaLR,LTR,donor,+,95122683,95122959|None,PLEKHF2|4	chr8:95124882-95154031|98|14.04|0.0|12.2|+|0|TE_info:THE1A,THE1A_dup2225,ERVL-MaLR,LTR,donor,+,95124607,95124882|None,PLEKHF2|5	chr8:95124882-95154031|98|14.04|0.0|12.2|+|0|TE_info:THE1A,THE1A_dup2225,ERVL-MaLR,LTR,donor,+,95124607,95124882|None,PLEKHF2|5	MSMS	A375_MHC_IP_R1	1	416.4306640625	3	416.532762	1246.57646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.315	1	38.315	37.815	38.815	0								0	0	0	0.16286	1	12988	12988		3.8459	0.25885	1				41307	511	30381	30622	40205	40205					-0.036969188651255536
QPDDKRGRRE	10	Unmodified	_QPDDKRGRRE_					0	0	0		nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC;APC|p.T1556Nfs*3|1|0.92|ENSG00000134982|chr5:112840254-112840255|-/A|frameshift_variant;APC|p.A703Qfs*15|1|0.94|ENSG00000134982|chr5:112837697-112837697|G/-|frameshift_variant	nc|ENSG00000134982|P25054-3|APC	nc|ENSG00000134982|P25054-3|APC	MULTI-SECPEP	A375_MHC_IP_R1	1	420.31011962890625	3	419.553325	1255.63815	0.5764	0.00024183	-4.4809	-0.00188	-3.9045	-0.0016382	419.5504789280475	48.855	0.85936	48.855	48.274	49.134	0					23	16	3	0	0	0	0.86608	1	17179	17179		17.863	9.4189	1	1456600			41308	4632	30382	30623	40206	40206					0.020551488783894456
QPDGVNSLSL	10	Unmodified	_QPDGVNSLSL_					0	0	0			REV__ENST00000484066.2_1_2:63280047-63280308:+|nuORF	REV__ENST00000484066.2_1_2:63280047-63280308:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	516.2344360351562	2	515.264196	1028.51384	-1.0579	-0.0005451	0.40413	0.00020824	-0.65378	-0.00033687	515.2647781562238	58.25	1.2675	58.999	58.375	59.643	0.74894					64	24	4	0	0	0	0.6502	1	21887	21887		17.113	0.1706	1	11547000	+		41309	25295	30383	30624	40207	40207					0.0007225833833217621
QPDKQLPNREL	11	Unmodified	_QPDKQLPNREL_					0	0	0			REV__nc|ENSG00000115685|Q15435-2|PPP1R7	REV__nc|ENSG00000115685|Q15435-2|PPP1R7	MULTI-MSMS	A375_MHC_IP_R1	1	446.9766845703125	3	446.577247	1336.70991	-0.054213	-2.421E-05	-0.72108	-0.00032202	-0.77529	-0.00034623	446.5768082214604	25.223	0.66141	25.223	25.002	25.664	0					25	11	3	0	0	0	0.73388	1	7354	7354		5.1984	3.1145	1	15214000	+		41310	17906	30384	30625	40208	40208					0.055026435122499606
QPDTLYIL	8	Unmodified	_QPDTLYIL_					0	0	0			REV__ENST00000504745.1_1_4:113347516-113362363:+|nuORF	REV__ENST00000504745.1_1_4:113347516-113362363:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	483.1768493652344	2	481.7633	961.512048	-0.12027	-5.7943E-05	-0.021009	-1.0122E-05	-0.14128	-6.8065E-05	481.7632214657365	107.69	1.2216	107.69	107.19	108.41	0					65	23	4	0	0	0	0.7256	1	39547	39547		26.884	5.137	1	10392000	+		41311	16618	30385	30626	40209	40209					0.029752493203773156
QPEQVHISKF	10	Unmodified	_QPEQVHISKF_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	A375_MHC_IP_R2	2	405.2835388183594	3	404.8839	1211.62987	-0.33077	-0.00013392	-0.071699	-2.903E-05	-0.40246	-0.00016295	404.8838752610097	23.004	0.51091	23.634	23.317	23.828	0.63014					18	9	3	0	0	0	0.59037	1	7350	7350		21.59	1.1756	1	3683600	+		41312	27255	30386	30627	40210	40210					0.03252201909026553
QPERWVRVP	9	Unmodified	_QPERWVRVP_					0	0	0		ENST00000585091.1_1_17:79977515-79980737:-|nuORF	ENST00000585091.1_1_17:79977515-79980737:-|nuORF	ENST00000585091.1_1_17:79977515-79980737:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	388.92486572265625	3	389.552485	1165.63563	-0.12561	-4.8933E-05	1.0115	0.00039402	0.88586	0.00034509	389.55278737128356	23.587	0.15253	23.587	23.483	23.635	0					4	2	2	0	0	0	0.79429	1	6464	6464		2.086	0	1	969890			41313	13713	30387	30628	40211	40211					0.059433452113808016
QPFDKRLRF	9	Unmodified	_QPFDKRLRF_					0	0	0		nc|ENSG00000153046|Q9Y232-3|CDYL;ENST00000472453.5_1_6:4776866-4954287:+|nuORF;nc|ENSG00000153046|Q9Y232-4|CDYL;ENSG00000153046|ENST00000397588|CDYL;nc|ENSG00000153046|Q9Y232|CDYL	nc|ENSG00000153046|Q9Y232-3|CDYL	nc|ENSG00000153046|Q9Y232-3|CDYL	MSMS	A375_MHC_IP_R2	2	603.8936767578125	2	603.840739	1205.66693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.541	1	90.273	89.773	90.773	0.7318								0	0	0	0.15486	1	34072	34072		16.942	6.8684	1				41314	6001	30388	30629	40212	40212					0.07231918245452107
QPFEKLFWERF	11	Unmodified	_QPFEKLFWERF_					0	0	0			REV__nc|ENSG00000128284|O95236|APOL3;REV__nc|ENSG00000100336|Q9BPW4|APOL4	REV__nc|ENSG00000100336|Q9BPW4|APOL4	MSMS	A375_MHC_IP_R1	1	763.8467407226562	2	763.893169	1525.77178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.52	1	111.52	111.02	112.02	0								0	0	0	0.16307	1	40881	40881		2.7352	0.45242	1		+		41315	18447;17076	30389	30630	40213	40213					0.029929949313782345
QPFISRRQH	9	Unmodified	_QPFISRRQH_					0	0	0			REV__ENSG00000075539|ENST00000358350|FRYL	REV__ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	A375_MHC_IP_R1	1	389.9329528808594	3	390.215984	1167.62612	0.12446	4.8568E-05	-0.52391	-0.00020444	-0.39944	-0.00015587	390.21571486095894	19.886	0.40707	19.886	19.623	20.03	0					13	7	2	0	0	0	0.75214	1	5017	5017		11.518	3.9089	1	1774700	+		41316	16658	30390	30631	40214	40214					0.04901576925840345
QPFKFFYFWV	10	Unmodified	_QPFKFFYFWV_					0	0	0		ENST00000269445.10_1_18:46570317-46570428:-|nuORF	ENST00000269445.10_1_18:46570317-46570428:-|nuORF	ENST00000269445.10_1_18:46570317-46570428:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	353.3321838378906	4	352.932672	1407.70158	-0.5285	-0.00018653	-0.85818	-0.00030288	-1.3867	-0.0004894	352.9323502176115	19.699	0.60713	20.31	19.942	20.549	0.61029					14	11	2	0	0	0	0.94044	1	6111	6111		0.69767	0.24315	1	1090700			41317	10369	30391	30632	40215	40215					0.014037413335472593
QPFLPHHGLHL	11	Unmodified	_QPFLPHHGLHL_					0	0	0		ENST00000324607.7_1_6:20152917-20212568:-|nuORF	ENST00000324607.7_1_6:20152917-20212568:-|nuORF	ENST00000324607.7_1_6:20152917-20212568:-|nuORF	MSMS	A375_MHC_IP_R1	1	648.752197265625	2	648.354014	1294.69348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.99	1	120.99	120.49	121.49	0								0	0	0	0.16138	1	44889	44889		10.074	0.6908	1				41318	10717	30392	30633	40216	40216					0.05791607136802668
QPFLSGGSA	9	Unmodified	_QPFLSGGSA_					0	0	0			REV__ENST00000476890.1_1_3:185813076-185826774:-|nuORF	REV__ENST00000476890.1_1_3:185813076-185826774:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	863.8284301757812	1	863.425758	862.418482	-0.68338	-0.00059005	1.8705	0.001615	1.1871	0.001025	863.4290034309066	107.02	0.7102	107.78	107.39	108.1	0.75436					28	13	3	0	0	0	0.22528	1	40419	40419		36.127	5.4905	1	4691300	+		41319	25190	30393	30634	40217	40217					-0.0182305006204615
QPFRRVTFSV	10	Unmodified	_QPFRRVTFSV_					0	0	0		ENSG00000169851|ENST00000695919|PCDH7	ENSG00000169851|ENST00000695919|PCDH7	ENSG00000169851|ENST00000695919|PCDH7	MULTI-SECPEP	A375_MHC_IP_R1	1	413.6432800292969	3	412.899773	1235.67749	0.54199	0.00022379	-3.8683	-0.0015972	-3.3263	-0.0013734	412.89848333039936	21.974	0.20219	21.974	21.86	22.062	0					5	3	2	0	0	0	0.93733	1	5830	5830		5.4027	4.705	1	696750			41320	7441	30394	30635	40218	40218					0.06907900899886954
QPFVSRTQF	9	Unmodified	_QPFVSRTQF_					0	0	0		ENST00000560975.5_1_15:63335715-63353895:+|nuORF	ENST00000560975.5_1_15:63335715-63353895:+|nuORF	ENST00000560975.5_1_15:63335715-63353895:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	555.1666870117188	2	555.290548	1108.56654	-0.59047	-0.00032788	-0.52862	-0.00029354	-1.1191	-0.00062142	555.7928840623332	25.28	0.51014	25.28	25.204	25.714	0					12	9	2	0	0	0	0.71341	1	7502	7502		13.042	2.9685	1	1794700			41321	13502	30395	30636	40219	40219					0.01660261191796053
QPFWRDAEP	9	Unmodified	_QPFWRDAEP_					0	0	0		ENST00000406735.6_1_7:91506280-91509986:-|nuORF;ENST00000454222.5_1_7:91456773-91509986:-|nuORF;ENST00000481516.1_1_7:91506280-91509461:-|nuORF;ENST00000456229.1_1_7:91506204-91509986:-|nuORF;ENST00000351870.7_1_7:91504015-91509986:-|nuORF;ENST00000425936.1_1_7:91504015-91509461:-|nuORF	ENST00000406735.6_1_7:91506280-91509986:-|nuORF	ENST00000406735.6_1_7:91506280-91509986:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	572.6917114257812	2	573.272355	1144.53016	-0.18224	-0.00010447	-0.074803	-4.2883E-05	-0.25704	-0.00014735	573.2721319490419	64.458	0.35799	65.198	65.054	65.412	0.74023					9	6	2	0	0	0	0.59098	1	24516	24516		27.629	8.3718	1	577280			41322	10929	30396	30637	40220	40220					-0.03632615704918862
QPGKDWIQES	10	Unmodified	_QPGKDWIQES_					0	0	0			REV__ENST00000553896.5_1_14:24099332-24110898:+|nuORF	REV__ENST00000553896.5_1_14:24099332-24110898:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	396.26519775390625	3	396.527894	1186.56185	-0.45833	-0.00018174	0.13019	5.1623E-05	-0.32814	-0.00013012	396.5279324801328	23.042	1.0717	23.672	22.907	23.979	0.63014					30	20	2	0	0	0	0.6774	1	7494	7494		18.721	4.5505	1	8745600	+		41323	26072	30397	30638	40221	40221					-0.023966677416410676
QPGKNRAV	8	Unmodified	_QPGKNRAV_					0	0	0		nc|ENSG00000101928|Q9UJG1-3|MOSPD1	nc|ENSG00000101928|Q9UJG1-3|MOSPD1	nc|ENSG00000101928|Q9UJG1-3|MOSPD1	MULTI-MSMS	A375_MHC_IP_R1	1	435.6508483886719	2	435.251226	868.487899	-0.10926	-4.7556E-05	-0.66972	-0.0002915	-0.77899	-0.00033905	435.25114798276735	102.16	1.7719	102.16	101.24	103.01	0					69	34	3	0	0	0	0.77702	1	37647	37647		5.7604	0	1	3420400			41324	14516	30398	30639	40222	40222					0.048394536773685104
QPGPPRGVQPA	11	Unmodified	_QPGPPRGVQPA_					0	0	0		ENST00000395040.6_1_19:3786173-3786290:-|nuORF	ENST00000395040.6_1_19:3786173-3786290:-|nuORF	ENST00000395040.6_1_19:3786173-3786290:-|nuORF	MSMS	A375_MHC_IP_R2	2	552.2999267578125	2	552.301447	1102.58834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.87	1	116.56	116.06	117.06	0.68999								0	0	0	0.16269	1	43683	43683		5.7319	1.7875	1				41325	11463	30399	30640	40223	40223					0.04115065940391105
QPGPSPSAPT	10	Unmodified	_QPGPSPSAPT_					0	0	0			REV__ENST00000536158.5_1_11:63991868-63992278:-|nuORF	REV__ENST00000536158.5_1_11:63991868-63992278:-|nuORF	MSMS	A375_MHC_IP_R2	2	469.6299743652344	2	469.732532	937.45051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.77	1	109.52	109.02	110.02	0.74684								0	0	0	0.15465	1	41066	41066		5.7319	0	1		+		41326	25911	30400	30641	40224	40224					-0.020716823789143746
QPGVPASHPS	10	Unmodified	_QPGVPASHPS_					0	0	0		ENST00000371712.3_1_9:139333928-139334213:-|nuORF	ENST00000371712.3_1_9:139333928-139334213:-|nuORF	ENST00000371712.3_1_9:139333928-139334213:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	488.6892395019531	2	488.745973	975.477394	-0.9518	-0.00046519	-3.2866	-0.0016063	-4.2384	-0.0020715	488.74592621695496	53.912	0.61377	54.663	54.404	55.018	0.75105					17	11	2	0	0	0	0.70651	1	20317	20317		9.3831	0	1	2710400			41327	11182	30401	30642	40225	40225					-0.011325737677225334
QPHLLRLNQP	10	Unmodified	_QPHLLRLNQP_					0	0	0			REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA	REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA	MULTI-MSMS	A375_MHC_IP_R2	2	406.3031005859375	3	405.903406	1214.68839	0.090621	3.6784E-05	-0.20367	-8.2669E-05	-0.11305	-4.5886E-05	405.90328739141347	27.451	0.30552	28.13	27.945	28.251	0.67857					11	5	3	0	0	0	0.6502	1	9391	9391		10.899	3.8619	1	6987100	+		41328	17776	30402	30643	40226	40226					0.08963303274163081
QPHLLRLNQP	10	Unmodified	_QPHLLRLNQP_					0	0	0			REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA	REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	405.903406	1214.68839	-0.47102	-0.00019119	0.20739	8.418E-05	-0.26363	-0.00010701	405.9035651786329	28.212	0.35268	28.212	28.037	28.39	0	0.041388	0.00024001	NaN	10.899	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6191500	+		41329	17776	30402	30643							0.08963303274163081
QPHLLRLNQP	10	Unmodified	_QPHLLRLNQP_					0	0	0			REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA	REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	405.903406	1214.68839	0.090621	3.6784E-05	-0.20367	-8.2669E-05	-0.11305	-4.5886E-05	405.90328739141347	27.451	0.30552	28.13	27.945	28.251	0.67857	-0.041388	-0.00026054	NaN	10.899	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6987100	+		41330	17776	30402	30643							0.08963303274163081
QPIILVFVP	9	Unmodified	_QPIILVFVP_					0	0	0			REV__ADAMTS3|p.I806F|1|0.54|ENSG00000156140|chr4:72303925-72303925|T/A|missense_variant	REV__ADAMTS3|p.I806F|1|0.54|ENSG00000156140|chr4:72303925-72303925|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	1026.9295654296875	1	1025.63938	1024.6321	0.072288	7.4141E-05	-0.20209	-0.00020727	-0.1298	-0.00013313	1026.641614127528	125.3	0.30169	125.59	125.42	125.72	0.2951					8	5	2	0	0	0	0.6898	1	48647	48647		7.9102	7.9102	1	203200000	+		41331	15325	30403	30644	40227	40227					0.12077282384825594
QPIKPEPKSQP	11	Unmodified	_QPIKPEPKSQP_					0	0	0		ENSG00000234828|ENST00000636793|IQCM	ENSG00000234828|ENST00000636793|IQCM	ENSG00000234828|ENST00000636793|IQCM	MULTI-SECPEP	A375_MHC_IP_R1	1	417.24627685546875	3	416.903072	1247.68739	0.29901	0.00012466	0.47665	0.00019872	0.77566	0.00032337	416.903207954297	54.625	0.40628	54.625	54.415	54.822	0					11	7	2	0	0	0	0.99732	1	19586	19586		2.2527	0.79761	1	1785800			41332	9743	30404	30645	40228	40228					0.07345044114595112
QPIKPEPKSQP	11	Unmodified	_QPIKPEPKSQP_					0	0	0		ENSG00000234828|ENST00000636793|IQCM	ENSG00000234828|ENST00000636793|IQCM	ENSG00000234828|ENST00000636793|IQCM	MULTI-MATCH	A375_MHC_IP_R2	2		3	416.903072	1247.68739	-0.45861	-0.0001912	0.1469	6.1242E-05	-0.31171	-0.00012995	416.9030889669827	53.884	0.41037	54.635	54.353	54.764	0.75105	0.0051073	-0.00025793	NaN	2.2527	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1460400			41333	9743	30404	30645							0.07345044114595112
QPIRMKKY	8	Unmodified	_QPIRMKKY_					0	0	0		ASNS|p.V64M|1|0.36|ENSG00000070669|chr7:97868967-97868967|C/T|missense_variant	ASNS|p.V64M|1|0.36|ENSG00000070669|chr7:97868967-97868967|C/T|missense_variant	ASNS|p.V64M|1|0.36|ENSG00000070669|chr7:97868967-97868967|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	354.6134948730469	3	355.20755	1062.60082	-0.055055	-1.9556E-05	-2.9469	-0.0010468	-3.002	-0.0010663	355.54085269186396	19.919	0.35694	19.919	19.623	19.98	0					8	6	2	0	0	0	0.972	1	4952	4952		0.40072	0	1	544430			41334	194	30405	30646	40229	40229					0.07202386079052303
QPKHKLRR	8	Unmodified	_QPKHKLRR_					0	0	0			REV__nc|ENSG00000164418|Q13002-4|GRIK2	REV__nc|ENSG00000164418|Q13002-4|GRIK2	MSMS	A375_MHC_IP_R1	1	354.9222717285156	3	354.892953	1061.65703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.099	1	46.099	45.599	46.599	0								0	0	0	0.16876	1	16158	16158		1.4819	0.51963	1		+		41335	20493	30406	30647	40230	40230					0.1286677503073861
QPKIVKWDRDM	11	Unmodified	_QPKIVKWDRDM_					0	0	0		ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-MSMS	A375_MHC_IP_R1	1	472.98651123046875	3	472.586978	1414.7391	-0.51533	-0.00024354	-0.12241	-5.7848E-05	-0.63773	-0.00030138	472.5869295085108	36.271	0.55707	36.271	35.932	36.489	0					27	10	4	0	0	0	0.46858	1	12107	12107		33.593	21.366	1	7264100			41336	7105	30407	30648	40231	40231					0.04832464536843872
QPKIVKWDRDM	11	Unmodified	_QPKIVKWDRDM_					0	0	0		ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-MSMS	A375_MHC_IP_R2	2	472.9866943359375	3	472.586978	1414.7391	-0.81014	-0.00038286	0.32734	0.0001547	-0.4828	-0.00022817	472.58710841596456	35.292	0.75912	36.056	35.778	36.537	0.76338					20	14	2	0	0	0	0.57268	1	12790	12790		25.438	21.592	1	18602000			41337	7105	30407	30648	40232	40232					0.04832464536843872
QPKIVKWDRDM	11	Unmodified	_QPKIVKWDRDM_					0	0	0		ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-MSMS	A375_MHC_IP_R2	2	354.9719543457031	4	354.692053	1414.7391	-0.45902	-0.00016281	-0.0577	-2.0466E-05	-0.51672	-0.00018328	354.6920355519224	35.292	0.50441	36.056	35.829	36.333	0.76338					19	9	3	0	0	0	0.73388	1	12803	12803		5.1984	4.4219	1	3533700			41338	7105	30407	30648	40233	40233					0.04832464536843872
QPKIVKWDRDM	11	Oxidation (M)	_QPKIVKWDRDM(Oxidation (M))_		QPKIVKWDRDM(1)		QPKIVKWDRDM(50)	0	0	1		ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-MSMS	A375_MHC_IP_R2	2	478.3179931640625	3	477.918616	1430.73402	-0.81709	-0.0003905	0.041793	1.9974E-05	-0.7753	-0.00037053	477.9185523077076	26.604	1.2747	27.264	27.008	28.282	0.65992					47	24	3	0	0	0	0.25984	1	9005	9005		49.842	43.608	1	8062800			41339	7105	30407	30649	40234	40234		360			0.035881606742350414
QPKRLLSHR	9	Unmodified	_QPKRLLSHR_					0	0	0			REV__ENST00000465425.1_1_19:36494241-36496384:-|nuORF	REV__ENST00000465425.1_1_19:36494241-36496384:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	378.6204528808594	3	378.899996	1133.67816	0.64702	0.00024516	1.6053	0.00060825	2.2523	0.00085341	379.2345707070972	21.859	0.3062	21.859	21.706	22.013	0					8	5	2	0	0	0	0.78753	1	5817	5817		4.897	0.70751	1	450310	+		41340	21647	30408	30650	40235	40235					0.11666740339592252
QPLENAGF	8	Unmodified	_QPLENAGF_					0	0	0		nc|ENSG00000080802|O95628-7|CNOT4	nc|ENSG00000080802|O95628-7|CNOT4	nc|ENSG00000080802|O95628-7|CNOT4	MULTI-SECPEP	A375_MHC_IP_R1	1	438.92254638671875	2	438.216517	874.418482	-0.198	-8.6767E-05	0.2546	0.00011157	0.056596	2.4801E-05	438.21665730567224	33.216	0.40507	33.216	33.04	33.445	0					9	7	2	0	0	0	0.972	1	10763	10763		5.7604	0	1	1493400			41341	14489	30409	30651	40236	40236					-0.023750500620394632
QPLESILY	8	Unmodified	_QPLESILY_					0	0	0			REV__ZSWIM8|p.R856Efs*21|1|0.46|ENSG00000214655|chr10:73793984-73793984|C/-|frameshift_variant	REV__ZSWIM8|p.R856Efs*21|1|0.46|ENSG00000214655|chr10:73793984-73793984|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	482.16326904296875	2	481.7633	961.512048	-0.12027	-5.7943E-05	-0.021009	-1.0122E-05	-0.14128	-6.8065E-05	481.7632214657365	107.69	1.2216	107.69	107.19	108.41	0					65	23	4	0	0	0	0.16592	1	39442	39442		77.984	6.8507	1	10392000	+		41342	22656	30410	30652	40237	40237					0.02975249320365947
QPLHPAERKTQ	11	Unmodified	_QPLHPAERKTQ_					0	0	0		nc|ENSG00000138311|Q70YC4|ZNF365	nc|ENSG00000138311|Q70YC4|ZNF365	nc|ENSG00000138311|Q70YC4|ZNF365	MULTI-SECPEP	A375_MHC_IP_R2	2	435.97344970703125	3	435.573837	1303.69968	-0.60455	-0.00026333	0.27271	0.00011878	-0.33185	-0.00014454	435.5738492659593	20.787	0.55757	21.397	21.16	21.717	0.61029					16	10	2	0	0	0	0.99778	1	6523	6523		3.8459	0	1	1146100			41343	14634	30411	30653	40238	40238					0.059980805776376656
QPLHRPHEPPN	11	Unmodified	_QPLHRPHEPPN_					0	0	0			REV__ENST00000396101.7_2_6:31555484-31556514:+|nuORF	REV__ENST00000396101.7_2_6:31555484-31556514:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	441.6296691894531	3	441.230182	1320.66872	-0.13168	-5.81E-05	-0.37826	-0.0001669	-0.50993	-0.000225	441.2297892226026	59.132	0.50984	59.132	58.836	59.346	0					25	9	4	0	0	0	0.73016	1	21260	21260		10.315	6.1986	1	3087200	+		41344	23712	30412	30654	40239	40239					0.021209272634223453
QPLHRPHEPPN	11	Unmodified	_QPLHRPHEPPN_					0	0	0			REV__ENST00000396101.7_2_6:31555484-31556514:+|nuORF	REV__ENST00000396101.7_2_6:31555484-31556514:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	441.230182	1320.66872	-0.62944	-0.00027773	0.38411	0.00016948	-0.24532	-0.00010824	441.2302471233877	58.263	0.55827	59.012	58.729	59.287	0.74894	-0.059789	0.0004995	NaN	10.315	27	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3036700	+		41345	23712	30412	30654							0.021209272634223453
QPLHRRTHPQ	10	Unmodified	_QPLHRRTHPQ_					0	0	0		ENST00000469678.1_1_3:53259917-53265542:-|nuORF	ENST00000469678.1_1_3:53259917-53265542:-|nuORF	ENST00000469678.1_1_3:53259917-53265542:-|nuORF	MSMS	A375_MHC_IP_R2	2	635.309814453125	2	635.349794	1268.68504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.5	1	108.25	107.75	108.75	0.75436								0	0	0	0.15465	1	40611	40611		5.7319	0.43497	1				41346	12325	30413	30655	40240	40240					0.06144053220168644
QPLIEKIRQ	9	Unmodified	_QPLIEKIRQ_					0	0	0			REV__ENSG00000172123|ENST00000304905|SLFN12	REV__ENSG00000172123|ENST00000304905|SLFN12	MULTI-MSMS	A375_MHC_IP_R1	1	375.59600830078125	3	375.564391	1123.67134	-0.016642	-6.2502E-06	-0.084297	-3.1659E-05	-0.10094	-3.7909E-05	375.564335410077	30.111	1.4033	30.111	29.403	30.806	0					37	27	2	0	0	0	0.084766	2	9504	9504;9627		53.404	11.448	1	6501700	+		41347	21122	30414	30656	40241;40242	40241					0.11445382668375714
QPLIEKIRQ	9	Unmodified	_QPLIEKIRQ_					0	0	0			REV__ENSG00000172123|ENST00000304905|SLFN12	REV__ENSG00000172123|ENST00000304905|SLFN12	MULTI-MSMS	A375_MHC_IP_R2	2	375.5856018066406	3	375.564391	1123.67134	-0.50585	-0.00018998	0.076429	2.8704E-05	-0.42943	-0.00016128	375.5644013368621	28.972	1.1012	29.671	29.333	30.434	0.69872					38	21	2	0	0	0	0.68382	1	10337	10337		8.4443	2.2525	1	10353000	+		41348	21122	30414	30656	40243	40243					0.11445382668375714
QPLLIGIILI	10	Unmodified	_QPLLIGIILI_					0	0	0			REV__nc|ENSG00000122884|P13674-3|P4HA1	REV__nc|ENSG00000122884|P13674-3|P4HA1	MULTI-MSMS	A375_MHC_IP_R1	1	364.9295959472656	3	364.917882	1091.73182	0.26096	9.5228E-05	-2.6387	-0.0009629	-2.3777	-0.00086768	364.91682552284817	40.737	0.20241	40.737	40.66	40.863	0					5	3	2	0	0	0	0.72358	1	13992	13992		1.7423	0.28716	1	1116400	+		41349	18221	30415	30657	40244	40244					0.1896209999877101
QPLLKSLNKI	10	Unmodified	_QPLLKSLNKI_					0	0	0			REV__ADAM18|p.S528Tfs*2|1|0.02|ENSG00000168619|chr8:39677466-39677467|-/TTAATTCTCTGCATGAAAGAAC|frameshift_variant	REV__ADAM18|p.S528Tfs*2|1|0.02|ENSG00000168619|chr8:39677466-39677467|-/TTAATTCTCTGCATGAAAGAAC|frameshift_variant	MSMS	A375_MHC_IP_R2	2	385.27294921875	3	385.248291	1152.72304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.055	1	19.658	19.158	20.158	0.60308								0	0	0	0.15588	1	5799	5799		1.7423	0.41263	1		+		41350	15311	30416	30658	40245	40245					0.1527912636227029
QPLPSLLLEQT	11	Unmodified	_QPLPSLLLEQT_					0	0	0			REV__nc|ENSG00000164463|Q8IUR6-2|CREBRF	REV__nc|ENSG00000164463|Q8IUR6-2|CREBRF	MSMS	A375_MHC_IP_R2	2	619.7513427734375	2	619.853178	1237.6918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.027	1	91.762	91.262	92.262	0.7345								0	0	0	0.15971	1	34636	34636		14.405	4.3315	1		+		41351	20496	30417	30659	40246	40246					0.08246508537513364
QPLQYNLSICP	11	Unmodified	_QPLQYNLSICP_					0	0	0		nc|ENSG00000179912|Q9Y2K5|R3HDM2;ENSG00000179912|ENST00000402412|R3HDM2;ENST00000548184.1_1_12:57644959-57689258:-|nuORF;nc|ENSG00000179912|Q9Y2K5-3|R3HDM2;nc|ENSG00000179912|Q9Y2K5-2|R3HDM2	nc|ENSG00000179912|Q9Y2K5|R3HDM2	nc|ENSG00000179912|Q9Y2K5|R3HDM2	MULTI-SECPEP	A375_MHC_IP_R2	2	425.9504699707031	3	425.884913	1274.63291	-0.43907	-0.00018699	0.56313	0.00023983	0.12406	5.2835E-05	425.8853809996117	18.975	0.19953	19.578	19.483	19.683	0.60308					5	3	2	0	0	0	0.9836	1	5796	5796		3.8459	0	1	4942900			41352	8261	30418	30660	40247	40247					0.006577089715392503
QPLRRMWVGPV	11	Unmodified	_QPLRRMWVGPV_					0	0	0			REV__nc|ENSG00000128253|O75678-2|RFPL2	REV__nc|ENSG00000128253|O75678-2|RFPL2	MULTI-MSMS	A375_MHC_IP_R1	1	670.2767944335938	2	669.876799	1337.73905	-0.4461	-0.00029883	-0.35863	-0.00024024	-0.80473	-0.00053907	670.3775787240935	128.02	1.1144	128.02	127.67	128.79	0					32	21	2	0	0	0	0.73016	1	49236	49236		8.7454	0	1	6463900	+		41353	27215	30419	30661	40248	40248					0.08368509327510765
QPLRRMWVGPV	11	Unmodified	_QPLRRMWVGPV_					0	0	0			REV__nc|ENSG00000128253|O75678-2|RFPL2	REV__nc|ENSG00000128253|O75678-2|RFPL2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	669.876799	1337.73905	-0.4461	-0.00029883	-0.35863	-0.00024024	-0.80473	-0.00053907	670.3775787240935	128.02	1.1144	128.02	127.67	128.79	0	-0.1755	-0.001191	NaN	8.7454	32	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6463900	+		41354	27215	30419	30661							0.08368509327510765
QPLRRMWVGPV	11	Unmodified	_QPLRRMWVGPV_					0	0	0			REV__nc|ENSG00000128253|O75678-2|RFPL2	REV__nc|ENSG00000128253|O75678-2|RFPL2	MULTI-MATCH	A375_MHC_IP_R2	2		2	669.876799	1337.73905	-0.83157	-0.00055705	0.99996	0.00066985	0.16839	0.0001128	669.8777146753978	128.13	0.76272	128.37	127.9	128.66	0.24323	0.1755	0.00062922	NaN	8.7454	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4041100	+		41355	27215	30419	30661							0.08368509327510765
QPLSEGSPLY	10	Unmodified	_QPLSEGSPLY_					0	0	0			REV__ENSG00000130706|ENST00000253003|ADRM1	REV__ENSG00000130706|ENST00000253003|ADRM1	MULTI-MSMS	A375_MHC_IP_R1	1	546.1741943359375	2	545.774396	1089.53424	-0.40909	-0.00022327	0.43574	0.00023781	0.026648	1.4544E-05	545.7744510824854	105.67	1.3247	105.67	105.3	106.62	0					41	25	2	0	0	0	0.63639	1	38783	38783		18.146	1.9972	1	2981400	+		41356	18556	30420	30662	40249	40249					-0.006945710018499085
QPLYVLQTLPN	11	Unmodified	_QPLYVLQTLPN_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.P3283Nfs*30|1|0.22|ENSG00000118058|chr11:118505746-118505767|TCCCCAACATCATAAAAAGATC/-|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MSMS	A375_MHC_IP_R1	1	429.2909240722656	3	429.243206	1284.70779	-0.33506	-0.00014382	0.42056	0.00018052	0.085502	3.6701E-05	429.57788391573854	41.878	0.61175	41.878	41.521	42.132	0					15	11	2	0	0	0	0.73421	1	14368	14368		4.8923	4.8923	1	1203600			41357	3522	30421	30663	40250	40250					0.07682214774422391
QPPAPRRDPF	10	Unmodified	_QPPAPRRDPF_					0	0	0		ENSG00000072858|ENST00000264852|SIDT1;nc|ENSG00000072858|Q9NXL6-2|SIDT1;ENST00000491730.5_1_3:113251655-113300327:+|nuORF	ENSG00000072858|ENST00000264852|SIDT1	ENSG00000072858|ENST00000264852|SIDT1	MULTI-MSMS	A375_MHC_IP_R2	2	394.93994140625	3	394.21224	1179.61489	-0.22368	-8.8176E-05	-0.79664	-0.00031405	-1.0203	-0.00040222	394.21171511809536	40.313	0.60797	41.088	40.727	41.335	0.77451					21	11	3	0	0	0	0.63639	1	14835	14835		20.581	12.636	1	4263700			41358	1551	30422	30664	40251	40251					0.032267548316895045
QPPCCDLVNVL	11	Unmodified	_QPPCCDLVNVL_					0	0	0			REV__ENSG00000124587|ENST00000304611|PEX6	REV__ENSG00000124587|ENST00000304611|PEX6	MULTI-MSMS	A375_MHC_IP_R1	1	601.1900634765625	2	600.791209	1199.56787	-0.5772	-0.00034678	-0.45841	-0.00027541	-1.0356	-0.00062218	600.7909064027199	84.539	0.8655	84.539	84.241	85.107	0					25	16	2	0	0	0	0.51633	1	30933	30933		29.841	4.4413	1	7957500	+		41359	18315	30423	30665	40252	40252					-0.023936088259915778
QPPCCDLVNVL	11	Unmodified	_QPPCCDLVNVL_					0	0	0			REV__ENSG00000124587|ENST00000304611|PEX6	REV__ENSG00000124587|ENST00000304611|PEX6	MULTI-MSMS	A375_MHC_IP_R2	2	601.1907958984375	2	600.791209	1199.56787	-0.43437	-0.00026096	-0.47866	-0.00028757	-0.91303	-0.00054854	600.7908633848066	84.001	0.87014	84.741	84.254	85.124	0.73962					27	16	2	0	0	0	0.43152	1	31932	31932		36.506	11.515	1	7478400	+		41360	18315	30423	30665	40253	40253					-0.023936088259915778
QPPCCDLVNVL	11	Unmodified	_QPPCCDLVNVL_					0	0	0			REV__ENSG00000124587|ENST00000304611|PEX6	REV__ENSG00000124587|ENST00000304611|PEX6	MULTI-SECPEP	A375_MHC_IP_R2	2	600.6776733398438	2	600.791209	1199.56787	-0.43437	-0.00026096	-0.47866	-0.00028757	-0.91303	-0.00054854	600.7908633848066	84.001	0.87014	84.741	84.254	85.124	0.73962					27	16	2	0	0	0	0.73984	1	31902	31902		36.506	36.506	1	7478400	+		41361	18315	30423	30665	40254	40254					-0.023936088259915778
QPPPPPPPP	9	Unmodified	_QPPPPPPPP_					0	0	0		ENSG00000139718|ENST00000604567|SETD1B;nc|ENSG00000139718|Q9UPS6-2|SETD1B;nc|ENSG00000274211|O14512|SOCS7;ENSG00000136848|ENST00000408936|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000151623|P08235-3|NR3C2;ENSG00000151623|ENST00000358102|NR3C2;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;ENSG00000176624|ENST00000406189|MEX3C;ENSG00000274211|ENST00000612932|SOCS7;ENSG00000061455|ENST00000407847|PRDM6;ENST00000397992.5_1_16:73092794-73093010:-|nuORF;ENSG00000205922|ENST00000382349|ONECUT3;ENSG00000108091|ENST00000263102|CCDC6;ENSG00000006377|ENST00000518156|DLX6;ENST00000503313.1_1_4:149067883-149122244:-|nuORF;nc|ENSG00000138081|Q86XK2-4|FBXO11;ENST00000393606.7_1_17:42294008-42297052:-|nuORF;ENST00000358635.7_1_4:140005384-140005639:-|nuORF;FBXO11|p.I497Mfs*18|1|0.23|ENSG00000138081|chr2:47823262-47823268|ATGGTGA/-|frameshift_variant;ENSG00000099381|ENST00000262519|SETD1A;ENSG00000087365|ENST00000322535|SF3B2;ENST00000533421.2_1_11:65820160-65823021:+|nuORF;ENST00000531589.5_1_11:65819891-65822828:+|nuORF;ENSG00000141867|ENST00000679869|BRD4;ENSG00000170145|ENST00000304987|SIK2;ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12;nc|ENSG00000138081|Q86XK2-5|FBXO11;ENSG00000138081|ENST00000403359|FBXO11;HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant;HTT|p.S2672Rfs*25|1|0.31|ENSG00000197386|chr4:3228913-3228913|T/-|frameshift_variant;ENSG00000197386|ENST00000355072|HTT;ENSG00000141232|ENST00000499247|TOB1;nc|ENSG00000078687|Q9HCJ0-1|TNRC6C;nc|ENSG00000078687|Q9HCJ0-2|TNRC6C;nc|ENSG00000078687|Q9HCJ0-4|TNRC6C;ENSG00000078687|ENST00000696270|TNRC6C;ENSG00000119283|ENST00000366653|TRIM67;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000182263|ENST00000333129|FIGN;PCLO|p.M3987*|2|0.34|ENSG00000186472|chr7:82916028-82916028|A/-|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO;PCLO|p.T2697Qfs*9|1|0.18|ENSG00000186472|chr7:82952864-82952864|T/-|frameshift_variant;ENSG00000204612|ENST00000376708|FOXB2;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP	ENSG00000139718|ENST00000604567|SETD1B;ENSG00000099381|ENST00000262519|SETD1A;ENSG00000087365|ENST00000322535|SF3B2;ENSG00000141867|ENST00000679869|BRD4;ENSG00000170145|ENST00000304987|SIK2;REV__ENSG00000126464|ENST00000418929|PRR12;ENSG00000148143|ENST00000277225|ZNF462;REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B;nc|ENSG00000126464|Q9ULL5-2|PRR12;REV__ENSG00000151612|ENST00000508784|ZNF827;REV__nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000138081|Q86XK2-5|FBXO11;REV__ENSG00000197386|ENST00000355072|HTT;HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant;ENSG00000141232|ENST00000499247|TOB1;REV__RBM33|p.E1103Gfs*12|1|0.21|ENSG00000184863|chr7:155766588-155766588|A/-|frameshift_variant;nc|ENSG00000078687|Q9HCJ0-1|TNRC6C;ENSG00000119283|ENST00000366653|TRIM67;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000182263|ENST00000333129|FIGN;PCLO|p.M3987*|2|0.34|ENSG00000186472|chr7:82916028-82916028|A/-|frameshift_variant;ENSG00000204612|ENST00000376708|FOXB2;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;REV__nc|ENSG00000124496|Q96PN7|TRERF1;REV__ENSG00000141232|ENST00000499247|TOB1;REV__ENSG00000151623|ENST00000358102|NR3C2;REV__ENSG00000183307|ENST00000331437|TMEM121B;REV__ENST00000522234.5_1_X:47078210-47085639:+|nuORF	ENSG00000139718|ENST00000604567|SETD1B	MULTI-SECPEP	A375_MHC_IP_R1	1	462.6527099609375	2	462.252903	922.491253	-0.2415	-0.00011164	0.0042666	1.9722E-06	-0.23724	-0.00010966	462.25289528289295	37.62	2.7992	37.62	36.541	39.34	0					71	54	2	0	0	0	0.068175	1	12307	12307		63.563	0	1	4861800			41362	5104;5716;9151;22284;5275;7476;8749;2076;1871;19174;21748;20532;21842;18386;19761;5221;4045;1679;3578;8362;8395;9466;14621;18309;19251;19762;4955;25727	30424	30666	40255	40255					0.02690703731366284
QPPPPPPPP	9	Unmodified	_QPPPPPPPP_					0	0	0		ENSG00000139718|ENST00000604567|SETD1B;nc|ENSG00000139718|Q9UPS6-2|SETD1B;nc|ENSG00000274211|O14512|SOCS7;ENSG00000136848|ENST00000408936|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000151623|P08235-3|NR3C2;ENSG00000151623|ENST00000358102|NR3C2;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;ENSG00000176624|ENST00000406189|MEX3C;ENSG00000274211|ENST00000612932|SOCS7;ENSG00000061455|ENST00000407847|PRDM6;ENST00000397992.5_1_16:73092794-73093010:-|nuORF;ENSG00000205922|ENST00000382349|ONECUT3;ENSG00000108091|ENST00000263102|CCDC6;ENSG00000006377|ENST00000518156|DLX6;ENST00000503313.1_1_4:149067883-149122244:-|nuORF;nc|ENSG00000138081|Q86XK2-4|FBXO11;ENST00000393606.7_1_17:42294008-42297052:-|nuORF;ENST00000358635.7_1_4:140005384-140005639:-|nuORF;FBXO11|p.I497Mfs*18|1|0.23|ENSG00000138081|chr2:47823262-47823268|ATGGTGA/-|frameshift_variant;ENSG00000099381|ENST00000262519|SETD1A;ENSG00000087365|ENST00000322535|SF3B2;ENST00000533421.2_1_11:65820160-65823021:+|nuORF;ENST00000531589.5_1_11:65819891-65822828:+|nuORF;ENSG00000141867|ENST00000679869|BRD4;ENSG00000170145|ENST00000304987|SIK2;ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12;nc|ENSG00000138081|Q86XK2-5|FBXO11;ENSG00000138081|ENST00000403359|FBXO11;HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant;HTT|p.S2672Rfs*25|1|0.31|ENSG00000197386|chr4:3228913-3228913|T/-|frameshift_variant;ENSG00000197386|ENST00000355072|HTT;ENSG00000141232|ENST00000499247|TOB1;nc|ENSG00000078687|Q9HCJ0-1|TNRC6C;nc|ENSG00000078687|Q9HCJ0-2|TNRC6C;nc|ENSG00000078687|Q9HCJ0-4|TNRC6C;ENSG00000078687|ENST00000696270|TNRC6C;ENSG00000119283|ENST00000366653|TRIM67;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000182263|ENST00000333129|FIGN;PCLO|p.M3987*|2|0.34|ENSG00000186472|chr7:82916028-82916028|A/-|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO;PCLO|p.T2697Qfs*9|1|0.18|ENSG00000186472|chr7:82952864-82952864|T/-|frameshift_variant;ENSG00000204612|ENST00000376708|FOXB2;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP	ENSG00000139718|ENST00000604567|SETD1B;ENSG00000099381|ENST00000262519|SETD1A;ENSG00000087365|ENST00000322535|SF3B2;ENSG00000141867|ENST00000679869|BRD4;ENSG00000170145|ENST00000304987|SIK2;REV__ENSG00000126464|ENST00000418929|PRR12;ENSG00000148143|ENST00000277225|ZNF462;REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B;nc|ENSG00000126464|Q9ULL5-2|PRR12;REV__ENSG00000151612|ENST00000508784|ZNF827;REV__nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000138081|Q86XK2-5|FBXO11;REV__ENSG00000197386|ENST00000355072|HTT;HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant;ENSG00000141232|ENST00000499247|TOB1;REV__RBM33|p.E1103Gfs*12|1|0.21|ENSG00000184863|chr7:155766588-155766588|A/-|frameshift_variant;nc|ENSG00000078687|Q9HCJ0-1|TNRC6C;ENSG00000119283|ENST00000366653|TRIM67;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000182263|ENST00000333129|FIGN;PCLO|p.M3987*|2|0.34|ENSG00000186472|chr7:82916028-82916028|A/-|frameshift_variant;ENSG00000204612|ENST00000376708|FOXB2;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;REV__nc|ENSG00000124496|Q96PN7|TRERF1;REV__ENSG00000141232|ENST00000499247|TOB1;REV__ENSG00000151623|ENST00000358102|NR3C2;REV__ENSG00000183307|ENST00000331437|TMEM121B;REV__ENST00000522234.5_1_X:47078210-47085639:+|nuORF	ENSG00000139718|ENST00000604567|SETD1B	MULTI-MSMS	A375_MHC_IP_R2	2	462.65277099609375	2	462.252903	922.491253	-0.73667	-0.00034053	0.18379	8.4955E-05	-0.55289	-0.00025557	462.25286143723554	35.463	0.75774	36.226	35.677	36.435	0.76338					22	14	2	0	0	0	0.03497	1	12830	12830		70.716	0	1	3135600			41363	5104;5716;9151;22284;5275;7476;8749;2076;1871;19174;21748;20532;21842;18386;19761;5221;4045;1679;3578;8362;8395;9466;14621;18309;19251;19762;4955;25727	30424	30666	40256	40256					0.02690703731366284
QPPVQWHTKKH	11	Unmodified	_QPPVQWHTKKH_					0	0	0			REV__ZNF296|p.R282W|1|0.61|ENSG00000170684|chr19:45072185-45072185|G/A|missense_variant	REV__ZNF296|p.R282W|1|0.61|ENSG00000170684|chr19:45072185-45072185|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	693.3853759765625	2	693.375478	1384.7364	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.7	1	121.7	121.2	122.2	0								0	0	0	0.16213	1	45217	45217		7.609	0	1		+		41364	29035	30425	30667	40257	40257					0.05942377194196524
QPPWASSQLV	10	Unmodified	_QPPWASSQLV_					0	0	0			REV__ENST00000352385.2_1_15:65678301-65678951:-|nuORF	REV__ENST00000352385.2_1_15:65678301-65678951:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	371.312255859375	3	371.529346	1111.56621	0.03068	1.1399E-05	0.29948	0.00011127	0.33016	0.00012267	371.52933189577203	36.643	0.40601	36.643	36.389	36.795	0					11	7	2	0	0	0	0.94421	1	12225	12225		0	0	1	676630	+		41365	23800	30426	30668	40258	40258					0.014888414719507637
QPQLAPRPGP	10	Unmodified	_QPQLAPRPGP_					0	0	0			REV__ENST00000409496.7_1_22:46368284-46368473:-|nuORF	REV__ENST00000409496.7_1_22:46368284-46368473:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	354.60137939453125	3	354.201452	1059.58253	-0.16764	-5.9377E-05	-0.041956	-1.4861E-05	-0.20959	-7.4238E-05	354.20142078628754	36.966	1.2172	36.966	36.339	37.556	0					29	23	3	0	0	0	0.72321	1	12463	12463		1.9064	0.25375	1	2940900	+		41366	24469	30427	30669	40259	40259					0.055119674287197995
QPQRIVRVRHH	11	Unmodified	_QPQRIVRVRHH_					0	0	0			REV__ENST00000532940.5_1_8:144921262-144922356:-|nuORF	REV__ENST00000532940.5_1_8:144921262-144922356:-|nuORF	MSMS	A375_MHC_IP_R2	2	713.5415649414062	2	713.418543	1424.82253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.24	1	114.95	114.45	115.45	0.70985								0	0	0	0.16302	1	43077	43077		2.9952	1.6657	1		+		41367	25871	30428	30670	40260	40260					0.1271138181959941
QPQRWWRRPRR	11	Unmodified	_QPQRWWRRPRR_					0	0	0			REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF	REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF	MSMS	A375_MHC_IP_R2	2	811.8544311523438	2	811.455991	1620.89743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.855	1	99.614	99.114	100.11	0.75977								0	0	0	0.16354	1	37497	37497		0.30703	0.30703	1		+		41368	24056	30429	30671	40261	40261					0.1118156435079527
QPQRWWRRPRR	11	Unmodified	_QPQRWWRRPRR_					0	0	0			REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF	REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF	MSMS	A375_MHC_IP_R2	2	811.2406616210938	2	811.455991	1620.89743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.36	1	119.9	119.4	120.4	0.5321								0	0	0	0.16337	1	45469	45469		1.1933	1.1933	1		+		41369	24056	30429	30671	40262	40262					0.1118156435079527
QPRDEAAF	8	Unmodified	_QPRDEAAF_					0	0	0		ENST00000411987.5_1_3:12613625-12613697:+|nuORF	ENST00000411987.5_1_3:12613625-12613697:+|nuORF	ENST00000411987.5_1_3:12613625-12613697:+|nuORF	MSMS	A375_MHC_IP_R1	1	467.1527099609375	2	467.224874	932.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.063	1	26.063	25.563	26.563	0								0	0	0	0.16876	1	7710	7710		10.824	0.64053	1				41370	11646	30430	30672	40263	40263					-0.033725491761060766
QPRFIQLFQER	11	Unmodified	_QPRFIQLFQER_					0	0	0		ENST00000502459.5_1_4:89930209-89950779:-|nuORF	ENST00000502459.5_1_4:89930209-89950779:-|nuORF	ENST00000502459.5_1_4:89930209-89950779:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	488.6703186035156	3	487.936887	1460.78883	-0.051785	-2.5268E-05	-0.70866	-0.00034578	-0.76045	-0.00037105	487.9366503900033	35.702	0.51157	35.702	35.421	35.932	0					22	9	3	0	0	0	0.73318	1	11888	11888		5.8681	5.8681	1	6240800			41371	12790	30431	30673	40264	40264					0.07686915537146888
QPRFIQLFQER	11	Unmodified	_QPRFIQLFQER_					0	0	0		ENST00000502459.5_1_4:89930209-89950779:-|nuORF	ENST00000502459.5_1_4:89930209-89950779:-|nuORF	ENST00000502459.5_1_4:89930209-89950779:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	488.33612060546875	3	487.936887	1460.78883	-0.77773	-0.00037949	-0.44933	-0.00021924	-1.2271	-0.00059873	487.9366556720163	34.741	0.65598	35.504	35.222	35.878	0.76338					22	12	3	0	0	0	0.73557	1	12583	12583		3.5927	0.96144	1	3986000			41372	12790	30431	30673	40265	40265					0.07686915537146888
QPRFIQLFQER	11	Unmodified	_QPRFIQLFQER_					0	0	0		ENST00000502459.5_1_4:89930209-89950779:-|nuORF	ENST00000502459.5_1_4:89930209-89950779:-|nuORF	ENST00000502459.5_1_4:89930209-89950779:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	487.936887	1460.78883	-0.051785	-2.5268E-05	-0.70866	-0.00034578	-0.76045	-0.00037105	487.9366503900033	35.702	0.51157	35.702	35.421	35.932	0	0.098762	-0.00018359	NaN	5.8681	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6240800			41373	12790	30431	30673							0.07686915537146888
QPRFIQLFQER	11	Unmodified	_QPRFIQLFQER_					0	0	0		ENST00000502459.5_1_4:89930209-89950779:-|nuORF	ENST00000502459.5_1_4:89930209-89950779:-|nuORF	ENST00000502459.5_1_4:89930209-89950779:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	487.936887	1460.78883	-0.77773	-0.00037949	-0.44933	-0.00021924	-1.2271	-0.00059873	487.9366556720163	34.741	0.65598	35.504	35.222	35.878	0.76338	-0.098762	0.00019603	NaN	5.8681	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3986000			41374	12790	30431	30673							0.07686915537146888
QPRKPRLLG	9	Unmodified	_QPRKPRLLG_					0	0	0		ENSG00000130385|ENST00000252677|BMP15	ENSG00000130385|ENST00000252677|BMP15	ENSG00000130385|ENST00000252677|BMP15	MSMS	A375_MHC_IP_R1	1	355.4596862792969	3	355.561092	1063.66145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.745	1	48.745	48.245	49.245	0								0	0	0	0.15486	1	17211	17211		0.96228	0.0979	1				41375	4240	30432	30674	40266	40266					0.13216239453663547
QPRKRYRRKLK	11	Unmodified	_QPRKRYRRKLK_					0	0	0		ENSG00000162817|ENST00000294889|C1orf115	ENSG00000162817|ENST00000294889|C1orf115	ENSG00000162817|ENST00000294889|C1orf115	MSMS	A375_MHC_IP_R2	2	765.140869140625	2	764.986592	1527.95863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.73	1	118.34	117.84	118.84	0.60909								0	0	0	0.16354	1	44582	44582		0.30703	0	1				41376	6600	30433	30675	40267	40267					0.21577076330231648
QPRLLTKLK	9	Unmodified	_QPRLLTKLK_					0	0	0			REV__SYNJ2|p.E350K|1|0.22|ENSG00000078269|chr6:158062085-158062085|G/A|missense_variant	REV__SYNJ2|p.E350K|1|0.22|ENSG00000078269|chr6:158062085-158062085|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	550.6171264648438	2	548.863683	1095.71281	-0.92475	-0.00050756	0.017843	9.7934E-06	-0.90691	-0.00049777	548.8636484816533	29.681	2.6693	29.681	29.252	31.921	0					154	52	5	0	0	0	0.67787	1	9682	9682		5.2969	1.7004	1	345850000	+		41377	28073	30434	30676	40268	40268					0.16878563427690096
QPRVTRKRLER	11	Unmodified	_QPRVTRKRLER_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.G2197Dfs*159|1|0.09|ENSG00000065526|chr1:15932821-15932822|-/ACCAGAGG|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN;SPEN|p.G2197Dfs*159|1|0.09|ENSG00000065526|chr1:15932821-15932822|-/ACCAGAGG|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	MULTI-SECPEP	A375_MHC_IP_R1	1	360.6048583984375	4	360.473292	1437.86406	0.079501	2.8658E-05	-0.6071	-0.00021884	-0.5276	-0.00019019	360.47309727410476	23.17	0.45876	23.17	23.024	23.483	0					11	8	2	0	0	0	1.0007	1	6399	6399		1.0136	1.0136	1	2116700			41378	1386;29233	30435	30677	40269	40269					0.16264517788272315
QPRWWYWPMSW	11	Unmodified	_QPRWWYWPMSW_					0	0	0		ENST00000584716.1_1_17:30815096-30816294:+|nuORF	ENST00000584716.1_1_17:30815096-30816294:+|nuORF	ENST00000584716.1_1_17:30815096-30816294:+|nuORF	MSMS	A375_MHC_IP_R2	2	811.8736572265625	2	811.871714	1621.72887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.97	1	111.7	111.2	112.2	0.73692								0	0	0	0.16354	1	41850	41850		0.30703	0.03801	1				41379	13708	30436	30678	40270	40270					-0.0571209839772564
QPRYRFYVKSY	11	Unmodified	_QPRYRFYVKSY_					0	0	0			REV__TRIM22|p.S399F|1|0.53|ENSG00000132274|chr11:5709347-5709347|C/T|missense_variant	REV__TRIM22|p.S399F|1|0.53|ENSG00000132274|chr11:5709347-5709347|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	753.6357421875	2	753.896243	1505.77793	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.098	1	65.836	65.336	66.336	0.73811								0	0	0	0.16334	1	24683	24683		1.3295	0	1		+		41380	28899	30437	30679	40271	40271					0.045275131628841336
QPSDCHIAN	9	Unmodified	_QPSDCHIAN_					0	0	0			REV__ENSG00000165124|ENST00000374469|SVEP1	REV__ENSG00000165124|ENST00000374469|SVEP1	MULTI-MSMS	A375_MHC_IP_R2	2	492.71673583984375	2	492.713816	983.413079	-0.46648	-0.00022984	-2.9268	-0.0014421	-3.3933	-0.0016719	492.7114556632467	64.623	0.30688	65.363	65.106	65.412	0.74022					6	5	2	0	0	0	0.69674	1	24463	24463		7.2892	0.93513	1	456160	+		41381	20550	30438	30680	40272	40272					-0.07929096916177514
QPSLPLPCW	9	Unmodified	_QPSLPLPCW_					0	0	0			REV__ENST00000368408.3_1_1:155059141-155059444:+|nuORF	REV__ENST00000368408.3_1_1:155059141-155059444:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	521.1797485351562	2	520.76532	1039.51609	-0.57935	-0.0003017	0.62158	0.0003237	0.042231	2.1992E-05	520.7655146043728	80.087	0.35928	80.087	79.879	80.238	0					11	6	2	0	0	0	0.63327	1	29190	29190		18.146	0	1	2000900	+		41382	23993	30439	30681	40273	40273					-0.002089844575721145
QPSRKIQTL	9	Unmodified	_QPSRKIQTL_					0	0	0		nc|ENSG00000069188|Q58EX2-3|SDK2;ENSG00000069188|ENST00000392650|SDK2;nc|ENSG00000069188|Q58EX2-4|SDK2;ENST00000479356.1_1_17:71354047-71433905:-|nuORF;nc|ENSG00000069188|Q58EX2-2|SDK2	nc|ENSG00000069188|Q58EX2-3|SDK2	nc|ENSG00000069188|Q58EX2-3|SDK2	MULTI-SECPEP	A375_MHC_IP_R2	2	357.9134826660156	3	357.548741	1069.62439	-0.54217	-0.00019385	0.02596	9.282E-06	-0.51621	-0.00018457	357.5487643635386	20.981	0.40586	21.592	21.362	21.768	0.61029					10	7	2	0	0	0	0.76642	1	6518	6518		8.9762	4.7867	1	1884400			41383	1474	30440	30682	40274	40274					0.09236523117237994
QPSSAPPSSK	10	Unmodified	_QPSSAPPSSK_					0	0	0			REV__nc|ENSG00000198055|P43250-2|GRK6	REV__nc|ENSG00000198055|P43250-2|GRK6	MULTI-MSMS	A375_MHC_IP_R2	2	494.6788635253906	2	493.251089	984.487624	-0.49991	-0.00024658	-0.41184	-0.00020314	-0.91175	-0.00044972	493.25090871375494	108.07	1.9397	108.83	108.1	110.04	0.75436					96	37	4	0	0	0	0.66308	1	40834	40834		16.149	3.6176	1	26419000	+		41384	27445	30441	30683	40275	40275					-0.005240108331349802
QPTIERVAL	9	Unmodified	_QPTIERVAL_					0	0	0		ENSG00000163811|ENST00000407426|WDR43;ENST00000466067.1_1_2:29147965-29158512:+|nuORF	ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	MULTI-SECPEP	A375_MHC_IP_R2	2	514.2003784179688	2	513.800749	1025.58694	-0.8451	-0.00043421	-0.13822	-7.1016E-05	-0.98332	-0.00050523	513.800641441197	32.961	0.40769	33.698	33.468	33.876	0.73691					24	7	4	0	0	0	0.46045	1	11753	11753		36.127	9.8589	1	22445000			41385	6726	30442	30684	40276	40276					0.07517431851601941
QPTKRLLHGEC	11	Unmodified	_QPTKRLLHGEC_					0	0	0			REV__ENST00000491771.5_1_2:152135291-152146334:-|nuORF	REV__ENST00000491771.5_1_2:152135291-152146334:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	427.31231689453125	3	427.895923	1280.66594	-0.42348	-0.00018121	0.32107	0.00013738	-0.10241	-4.3822E-05	427.8960615557922	36.672	0.4061	36.672	36.489	36.895	0					12	7	2	0	0	0	0.99819	1	12387	12387		5.8681	1.462	1	1307600	+		41386	25401	30443	30685	40277	40277					0.03683335814230304
QPTKRLLHGEC	11	Unmodified	_QPTKRLLHGEC_					0	0	0			REV__ENST00000491771.5_1_2:152135291-152146334:-|nuORF	REV__ENST00000491771.5_1_2:152135291-152146334:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	427.895923	1280.66594	-0.35703	-0.00015277	-0.063659	-2.7239E-05	-0.42069	-0.00018001	427.89588991884773	35.901	0.25496	36.664	36.435	36.69	0.76338	-0.0037456	-8.8408E-05	NaN	8.7518	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2169900	+		41387	25401	30443	30685							0.03683335814230304
QPTLPIGQ	8	Unmodified	_QPTLPIGQ_					0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	MULTI-SECPEP	A375_MHC_IP_R2	2	426.6246032714844	2	427.242535	852.470518	-0.27615	-0.00011798	-0.0229	-9.7841E-06	-0.29905	-0.00012777	427.2421137587035	44.646	0.25335	45.415	45.239	45.492	0.7691					6	4	2	0	0	0	0.972	1	16614	16614		1.8442	0	1	553560	+		41388	21936	30444	30686	40278	40278					0.038381133517077615
QPVDCCKLTL	10	Unmodified	_QPVDCCKLTL_					0	0	0			REV__ENST00000435366.2_2_20:33864602-33864731:-|nuORF	REV__ENST00000435366.2_2_20:33864602-33864731:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	560.7255859375	2	560.280477	1118.5464	-0.57283	-0.00032095	1.0391	0.00058217	0.46624	0.00026123	560.2826141038022	92.801	0.6072	93.54	93.089	93.696	0.73901					13	11	2	0	0	0	0.6806	1	35329	35329		14.838	2.3067	1	1299800	+		41389	24748	30445	30687	40279	40279					-0.008129938546971971
QPVFRQHFL	9	Unmodified	_QPVFRQHFL_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-SECPEP	A375_MHC_IP_R2	2	585.6835327148438	2	586.322183	1170.62981	-0.47123	-0.00027629	-1.1053	-0.00064805	-1.5765	-0.00092434	586.321440573676	42.454	0.2542	43.226	43.065	43.319	0.7724					8	4	2	0	0	0	0.76187	1	15788	15788		3.9444	0	1	1073100			41390	8585	30446	30688	40280	40280					0.05132246699713505
QPVFRQHFL	9	Unmodified	_QPVFRQHFL_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MATCH	A375_MHC_IP_R1	1		2	586.322183	1170.62981	-0.12098	-7.0933E-05	-0.71569	-0.00041962	-0.83667	-0.00049056	586.3215969748638	43.388	0.30505	43.388	43.146	43.451	0	0.080754	0.00039075	NaN	3.9444	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1367000			41391	8585	30446	30688							0.05132246699713505
QPVIMAVPPR	10	Unmodified	_QPVIMAVPPR_					0	0	0		ENSG00000164916|ENST00000328914|FOXK1;nc|ENSG00000164916|P85037-2|FOXK1;ENST00000496023.1_1_7:4798670-4799378:+|nuORF	ENSG00000164916|ENST00000328914|FOXK1	ENSG00000164916|ENST00000328914|FOXK1	MULTI-SECPEP	A375_MHC_IP_R1	1	369.57476806640625	3	369.882955	1106.62703	0.11123	4.1143E-05	3.8137	0.0014106	3.9249	0.0014518	369.88418583453307	19.251	0.24093	19.251	19.23	19.471	0					9	5	3	0	0	0	0.94102	1	4764	4764		0.50596	0	1	12439000			41392	6892	30447	30689	40281	40281					0.07798655250508091
QPVPAGAA	8	Unmodified	_QPVPAGAA_					0	0	0			REV__ENST00000392859.7_1_11:118443107-118443263:+|nuORF	REV__ENST00000392859.7_1_11:118443107-118443263:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	710.2942504882812	1	710.383165	709.375889	-0.37506	-0.00026644	-0.039529	-2.8081E-05	-0.41459	-0.00029452	710.3832140997814	126.13	0.25121	126.13	126.05	126.3	0					5	4	2	0	0	0	0.94479	1	48182	48182		19.439	0	1	5863900	+		41393	24279	30448	30690	40282	40282					0.009575996003718501
QPVRVELEF	9	Unmodified	_QPVRVELEF_					0	0	0			REV__nc|ENSG00000180900|Q14160-2|SCRIB	REV__nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-SECPEP	A375_MHC_IP_R1	1	559.2057495117188	2	558.806031	1115.59751	-0.71744	-0.00040091	0.30771	0.00017195	-0.40973	-0.00022896	558.8060658813934	90.556	0.91459	90.556	90.133	91.048	0					48	17	4	0	0	0	0.53098	1	33208	33208		43.858	5.6827	1	16967000	+		41394	21626	30449	30691	40283	40283					0.04433414506047484
QPVSGSWLTL	10	Unmodified	_QPVSGSWLTL_					0	0	0		ENST00000431002.6_1_11:62437223-62437496:-|nuORF	ENST00000431002.6_1_11:62437223-62437496:-|nuORF	ENST00000431002.6_1_11:62437223-62437496:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	544.2103881835938	2	544.292756	1086.57096	-0.74055	-0.00040308	-0.50566	-0.00027523	-1.2462	-0.00067831	544.2922769179071	78.76	1.0648	79.505	79.134	80.199	0.74474					30	20	2	0	0	0	0.55789	1	30029	30029		24.021	3.5669	1	10488000			41395	11863	30450	30692	40284	40284					0.031137256147076187
QPWPRKCEG	9	Unmodified	_QPWPRKCEG_					0	0	0			REV__nc|ENSG00000175175|Q8WY54-3|PPM1E	REV__nc|ENSG00000175175|Q8WY54-3|PPM1E	MULTI-SECPEP	A375_MHC_IP_R2	2	367.6325378417969	3	367.515043	1099.5233	-0.071989	-2.6457E-05	2.4856	0.00091349	2.4136	0.00088703	367.8493789225049	26.808	0.35939	27.468	27.363	27.722	0.65992					8	6	2	0	0	0	0.78348	1	9134	9134		2.4985	0	1	592180	+		41396	21328	30451	30693	40285	40285					-0.02248251857122341
QPYDFMNGF	9	Unmodified	_QPYDFMNGF_					0	0	0			REV__nc|ENSG00000197506|Q9HAS3-2|SLC28A3	REV__nc|ENSG00000197506|Q9HAS3-2|SLC28A3	MULTI-SECPEP	A375_MHC_IP_R2	2	559.1458740234375	2	559.734217	1117.45388	-0.50289	-0.00028148	1.9406	0.0010862	1.4377	0.00080474	559.7347009246838	93.79	0.65723	94.534	94.312	94.969	0.74474					18	12	2	0	0	0	0.75164	1	35700	35700		9.3831	1.473	1	1164500	+		41397	22293	30452	30694	40286	40286					-0.10014755596557734
QPYKGLCPC	9	Unmodified	_QPYKGLCPC_					0	0	0			REV__ENST00000555034.5_3_14:89878823-89960383:-|nuORF	REV__ENST00000555034.5_3_14:89878823-89960383:-|nuORF	MSMS	A375_MHC_IP_R1	1	504.68023681640625	2	504.735706	1007.45686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.47	1	74.47	73.97	74.97	0								0	0	0	0.15486	1	27125	27125		7.2892	0.56607	1		+		41398	26090	30453	30695	40287	40287					-0.046572037433861624
QPYRWSCE	8	Unmodified	_QPYRWSCE_					0	0	0		ENSG00000181481|ENST00000328381|RNF135	ENSG00000181481|ENST00000328381|RNF135	ENSG00000181481|ENST00000328381|RNF135	MULTI-MSMS	A375_MHC_IP_R2	2	357.2237854003906	3	356.823765	1067.44946	-0.15264	-5.4464E-05	0.66072	0.00023576	0.50808	0.0001813	356.82402371837884	104.86	0.865	105.63	105.21	106.07	0.76308					29	16	2	0	0	0	0.77815	1	39686	39686		1.6526	0	1	3047800			41399	8349	30454	30696	40288	40288					-0.08156220019441207
QPYRWSCE	8	Unmodified	_QPYRWSCE_					0	0	0		ENSG00000181481|ENST00000328381|RNF135	ENSG00000181481|ENST00000328381|RNF135	ENSG00000181481|ENST00000328381|RNF135	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	356.823765	1067.44946	0.1448	5.1667E-05	0.70988	0.0002533	0.85468	0.00030497	356.8240211594381	105.6	0.86264	105.6	105.25	106.11	0	-0.011119	2.573E-05	NaN	1.6526	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2575900			41400	8349	30454	30696							-0.08156220019441207
QPYRWSCE	8	Unmodified	_QPYRWSCE_					0	0	0		ENSG00000181481|ENST00000328381|RNF135	ENSG00000181481|ENST00000328381|RNF135	ENSG00000181481|ENST00000328381|RNF135	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	356.823765	1067.44946	-0.15264	-5.4464E-05	0.66072	0.00023576	0.50808	0.0001813	356.82402371837884	104.86	0.865	105.63	105.21	106.07	0.76308	0.011119	-2.6899E-05	NaN	1.6526	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3047800			41401	8349	30454	30696							-0.08156220019441207
QQDPQQYNV	9	Unmodified	_QQDPQQYNV_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	A375_MHC_IP_R1	1	560.6564331054688	2	560.256902	1118.49925	-0.42189	-0.00023636	-0.048862	-2.7375E-05	-0.47075	-0.00026374	560.256814080146	34.97	0.55949	34.97	34.759	35.319	0					23	10	3	0	0	0	0.0015808	2	11577	11577;11650		155.03	126.53	1	12156000			41402	2697	30455	30697	40289;40290	40289					-0.05525813809799729
QQDPQQYNV	9	Unmodified	_QQDPQQYNV_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	A375_MHC_IP_R2	2	560.211669921875	2	560.256902	1118.49925	-0.89586	-0.00050191	-0.16641	-9.3231E-05	-1.0623	-0.00059514	560.2567905286294	34.403	0.61078	35.156	34.853	35.464	0.75225					32	11	5	0	0	0	0.0098183	4	12483	12369;12375;12483;12502		176.84	144.05	1	13180000			41403	2697	30455	30697	40291;40292;40293;40294	40293					-0.05525813809799729
QQEKWQEKLKR	11	Unmodified	_QQEKWQEKLKR_					0	0	0			REV__nc|ENSG00000212643|Q15695|ZRSR2P1	REV__nc|ENSG00000212643|Q15695|ZRSR2P1	MULTI-MSMS	A375_MHC_IP_R1	1	751.316650390625	2	750.917707	1499.82086	-0.43371	-0.00032568	-0.83198	-0.00062475	-1.2657	-0.00095043	750.9170389796237	105.07	0.55807	105.07	104.79	105.35	0					30	10	4	0	0	0	0.72565	1	38547	38547		13.042	0.80181	1	9852700	+		41404	27486	30456	30698	40295	40295					0.09094283220292709
QQEKWQEKLKR	11	Unmodified	_QQEKWQEKLKR_					0	0	0			REV__nc|ENSG00000212643|Q15695|ZRSR2P1	REV__nc|ENSG00000212643|Q15695|ZRSR2P1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	750.917707	1499.82086	-0.43371	-0.00032568	-0.83198	-0.00062475	-1.2657	-0.00095043	750.9170389796237	105.07	0.55807	105.07	104.79	105.35	0	0.057613	0.00017956	NaN	13.042	30	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9852700	+		41405	27486	30456	30698							0.09094283220292709
QQEKWQEKLKR	11	Unmodified	_QQEKWQEKLKR_					0	0	0			REV__nc|ENSG00000212643|Q15695|ZRSR2P1	REV__nc|ENSG00000212643|Q15695|ZRSR2P1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	750.917707	1499.82086	-0.82466	-0.00061925	-1.0195	-0.00076558	-1.8442	-0.0013848	750.9169679209245	104.2	0.55977	104.96	104.65	105.21	0.76308	-0.057613	-0.00010211	NaN	13.042	27	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9644400	+		41406	27486	30456	30698							0.09094283220292709
QQERVQLQEYW	11	Unmodified	_QQERVQLQEYW_					0	0	0		nc|ENSG00000087157|Q32NB8-2|PGS1;ENSG00000087157|ENST00000262764|PGS1;ENST00000585521.2_1_17:76374779-76411070:+|nuORF	nc|ENSG00000087157|Q32NB8-2|PGS1	nc|ENSG00000087157|Q32NB8-2|PGS1	MSMS	A375_MHC_IP_R2	2	753.8682250976562	2	753.870422	1505.72629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.947	1	95.696	95.196	96.196	0.74914								0	0	0	0.16302	1	36074	36074		2.9952	0.49676	1				41407	1860	30457	30699	40296	40296					-0.0063427532163586875
QQEVRPILY	9	Unmodified	_QQEVRPILY_					0	0	0			REV__CASS4|p.F335Y|1|0.29|ENSG00000087589|chr20:56452180-56452180|T/A|missense_variant	REV__CASS4|p.F335Y|1|0.29|ENSG00000087589|chr20:56452180-56452180|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	382.6000061035156	3	382.548629	1144.62406	-0.11448	-4.3795E-05	-0.28048	-0.0001073	-0.39496	-0.00015109	382.54848426932176	30.553	0.40282	31.272	31.064	31.467	0.71857					15	7	3	0	0	0	0.65721	1	10784	10784		10.8	4.1761	1	3308400	+		41408	15583	30458	30700	40297	40297					0.05753103397387349
QQGLLHVGDI	10	Unmodified	_QQGLLHVGDI_					0	0	0		nc|ENSG00000108852|Q14168-5|MPP2;nc|ENSG00000108852|Q14168-6|MPP2;nc|ENSG00000108852|Q14168-2|MPP2;ENSG00000108852|ENST00000269095|MPP2;nc|ENSG00000108852|Q14168-3|MPP2;nc|ENSG00000108852|Q14168|MPP2;nc|ENSG00000108852|Q14168-4|MPP2	nc|ENSG00000108852|Q14168-5|MPP2	nc|ENSG00000108852|Q14168-5|MPP2	MSMS	A375_MHC_IP_R2	2	540.205078125	2	540.29583	1078.57711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.73	1	134.87	134.37	135.37	0.13901								0	0	0	0.15451	1	52995	52995		6.2058	1.8765	1				41409	2845	30459	30701	40298	40298					0.04096243846242942
QQGPLRSI	8	Unmodified	_QQGPLRSI_					0	0	0		ENST00000475957.1_1_9:20363472-20620706:-|nuORF;nc|ENSG00000171843|P42568-2|MLLT3;ENSG00000171843|ENST00000380338|MLLT3	ENST00000475957.1_1_9:20363472-20620706:-|nuORF	ENST00000475957.1_1_9:20363472-20620706:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	450.1588134765625	2	449.758884	897.503215	-0.01879	-8.4511E-06	0.060711	2.7305E-05	0.04192	1.8854E-05	449.75882081230617	35.192	0.66134	35.192	34.912	35.573	0					26	12	3	0	0	0	0.87643	1	11689	11689		32.305	17.467	1	6522800			41410	7648	30460	30702	40299	40299					0.05036320474573586
QQGPLRSI	8	Unmodified	_QQGPLRSI_					0	0	0		ENST00000475957.1_1_9:20363472-20620706:-|nuORF;nc|ENSG00000171843|P42568-2|MLLT3;ENSG00000171843|ENST00000380338|MLLT3	ENST00000475957.1_1_9:20363472-20620706:-|nuORF	ENST00000475957.1_1_9:20363472-20620706:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	450.1585998535156	2	449.758884	897.503215	-0.56952	-0.00025615	0.045346	2.0395E-05	-0.52418	-0.00023575	449.7588373899437	34.387	0.51019	35.14	34.904	35.414	0.75225					23	9	3	0	0	0	0.24136	1	12372	12372		66.457	16.524	1	6470300			41411	7648	30460	30702	40300	40300					0.05036320474573586
QQHIFRSS	8	Unmodified	_QQHIFRSS_					0	0	0			REV__nc|ENSG00000089159|P49023-2|PXN	REV__nc|ENSG00000089159|P49023-2|PXN	MSMS	A375_MHC_IP_R2	2	501.6907653808594	2	501.759415	1001.50428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.8	1	114.51	114.01	115.01	0.70985								0	0	0	0.16876	1	42913	42913		4.756	0.42677	1		+		41412	16905	30461	30703	40301	40301					0.003585348434739899
QQHIFRSS	8	Unmodified	_QQHIFRSS_					0	0	0			REV__nc|ENSG00000089159|P49023-2|PXN	REV__nc|ENSG00000089159|P49023-2|PXN	MSMS	A375_MHC_IP_R2	2	501.6903381347656	2	501.759415	1001.50428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.35	1	115.06	114.56	115.56	0.70985								0	0	0	0.16876	1	43111	43111		4.756	0.42677	1		+		41413	16905	30461	30703	40302	40302					0.003585348434739899
QQHPPPPP	8	Unmodified	_QQHPPPPP_					0	0	0		ENST00000474112.5_1_3:63898274-63982174:+|nuORF;ENSG00000163635|ENST00000674280|ATXN7;nc|ENSG00000163635|O15265-2|ATXN7	ENST00000474112.5_1_3:63898274-63982174:+|nuORF	ENST00000474112.5_1_3:63898274-63982174:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	448.6954040527344	2	449.232502	896.450451	-0.39166	-0.00017595	-0.42084	-0.00018905	-0.8125	-0.000365	449.2326109782843	39.78	0.25317	39.78	39.643	39.896	0					9	4	3	0	0	0	0.972	1	13570	13570		11.114	3.2043	1	1327400			41414	6698	30462	30704	40303	40303					-0.0019163758825015975
QQIFRRFRYRI	11	Unmodified	_QQIFRRFRYRI_					0	0	0			REV__JAK2|p.E577Sfs*8|1|0.71|ENSG00000096968|chr9:5072578-5072579|AG/-|frameshift_variant	REV__JAK2|p.E577Sfs*8|1|0.71|ENSG00000096968|chr9:5072578-5072579|AG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6689453125	3	528.307426	1581.90045	-0.51599	-0.0002726	-0.0032268	-1.7047E-06	-0.51922	-0.00027431	528.3089870907125	76.786	0.25268	77.527	77.352	77.604	0.74052					5	4	2	0	0	0	1.0014	1	29125	29125		0.08335	0.08335	1	1091800	+		41415	17009	30463	30705	40304	40304					0.13277394684973842
QQIVSRSWK	9	Unmodified	_QQIVSRSWK_					0	0	0		ENST00000453654.6_3_7:137073903-137074059:-|nuORF	ENST00000453654.6_3_7:137073903-137074059:-|nuORF	ENST00000453654.6_3_7:137073903-137074059:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	378.280517578125	3	377.88049	1130.61964	-0.1164	-4.3986E-05	0.4047	0.00015293	0.2883	0.00010894	377.8804684988165	23.752	0.25337	24.382	24.232	24.485	0.63014					10	4	3	0	0	0	0.76642	1	7720	7720		8.9762	3.5735	1	2629000			41416	12099	30464	30706	40305	40305					0.05955638974455724
QQKKLLINV	9	Unmodified	_QQKKLLINV_					0	0	0			REV__nc|ENSG00000173898|O15020-2|SPTBN2;REV__ENSG00000115306|ENST00000356805|SPTBN1;REV__nc|ENSG00000115306|Q01082-2|SPTBN1	REV__ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	A375_MHC_IP_R1	1	542.7470703125	2	542.347866	1082.68118	-0.9544	-0.00051762	-0.2873	-0.00015582	-1.2417	-0.00067343	542.3475502308097	147.31	0.22006	147.31	147.22	147.44	0					65	25	3	0	0	0	0.77563	1	56289	56289		0.52476	0	1	490610	+		41417	17871;27186;21253	30465	30707	40306	40306					0.14314570673764138
QQKLRVLQR	9	Unmodified	_QQKLRVLQR_					0	0	0		nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1;GOLGB1|p.E884Rfs*20|1|0.07|ENSG00000173230|chr3:121697859-121697859|T/-|frameshift_variant;GOLGB1|p.M878Ifs*27|1|0.06|ENSG00000173230|chr3:121697861-121697874|GTAAGAGCTGATCC/-|frameshift_variant	nc|ENSG00000173230|Q14789-3|GOLGB1	nc|ENSG00000173230|Q14789-3|GOLGB1	MSMS	A375_MHC_IP_R1	1	390.28057861328125	3	390.247285	1167.72002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.619	1	68.619	68.119	69.119	0								0	0	0	0.15486	1	24886	24886		7.609	2.5614	1				41418	7780	30466	30708	40307	40307					0.1428729602812382
QQKRKPYLI	9	Unmodified	_QQKRKPYLI_					0	0	0			REV__ENSG00000112818|ENST00000230588|MEP1A	REV__ENSG00000112818|ENST00000230588|MEP1A	MULTI-MSMS	A375_MHC_IP_R2	2	392.5999755859375	3	391.908269	1172.70298	-0.25893	-0.00010148	0.46785	0.00018336	0.20892	8.1878E-05	391.9084241377655	32.883	0.30521	33.62	33.468	33.773	0.73692					12	5	3	0	0	0	0.71902	1	11779	11779		5.2969	0.24936	1	1650400	+		41419	17757	30467	30709	40308	40308					0.12353375422321733
QQKTILELK	9	Unmodified	_QQKTILELK_					0	0	0		ENSG00000163617|ENST00000295878|CCDC191;nc|ENSG00000163617|Q8NCU4-2|CCDC191;ENST00000460813.5_1_3:113723412-113755878:-|nuORF	ENSG00000163617|ENST00000295878|CCDC191	ENSG00000163617|ENST00000295878|CCDC191	MULTI-MSMS	A375_MHC_IP_R2	2	367.9609069824219	3	367.560646	1099.66011	0.073908	2.7166E-05	0.47556	0.0001748	0.54947	0.00020196	367.5607703650898	66.752	0.71233	67.489	67.138	67.85	0.73631					20	13	2	0	0	0	0.52197	1	25298	25298		18.721	2.9826	1	1527400			41420	6692	30468	30710	40309	40309					0.11426560574227551
QQLAIETYNA	10	Unmodified	_QQLAIETYNA_					0	0	0			REV__nc|ENSG00000168297|Q7Z7A4-7|PXK	REV__nc|ENSG00000168297|Q7Z7A4-7|PXK	MULTI-SECPEP	A375_MHC_IP_R2	2	576.2802124023438	2	575.790578	1149.5666	-0.13893	-7.9993E-05	1.0553	0.00060761	0.91634	0.00052762	575.7892618656261	63.14	0.35401	63.882	63.788	64.142	0.74263					9	6	2	0	0	0	0.91909	1	23909	23909		13.906	9.15	1	860930	+		41421	20841	30469	30711	40310	40310					-0.002197835988454244
QQLGKVVQV	9	Unmodified	_QQLGKVVQV_					0	0	0		ENST00000495104.1_1_4:165841962-165842070:-|nuORF	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	500.20306396484375	2	499.803291	997.59203	-0.36154	-0.0001807	-0.29028	-0.00014508	-0.65183	-0.00032578	499.80316383746	40.799	0.55486	40.799	40.559	41.114	0					17	10	2	0	0	0	0.28475	1	14044	14044		48.346	0	1	15241000			41422	12699	30470	30712	40311	40311					0.09313735714238192
QQLGKVVQV	9	Unmodified	_QQLGKVVQV_					0	0	0		ENST00000495104.1_1_4:165841962-165842070:-|nuORF	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	500.203125	2	499.803291	997.59203	-0.60534	-0.00030255	-0.40972	-0.00020478	-1.0151	-0.00050733	499.80305690896	39.977	0.45573	40.752	40.524	40.98	0.77451					15	8	2	0	0	0	0.0097736	1	14766	14766		112.59	0	1	11225000			41423	12699	30470	30712	40312	40312					0.09313735714238192
QQLKWDRKKKR	11	Unmodified	_QQLKWDRKKKR_					0	0	0		ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54	ENSG00000123064|ENST00000306014|DDX54	ENSG00000123064|ENST00000306014|DDX54	MULTI-MSMS	A375_MHC_IP_R1	1	758.358642578125	2	757.457333	1512.90011	-0.85637	-0.00064866	-0.11681	-8.8482E-05	-0.97319	-0.00073715	757.4566841396686	148.82	1.9615	148.82	147.75	149.72	0					157	49	5	0	0	0	0.73934	4	56603	56603;56648;56809;57008		0	0	1	1134000			41424	3820	30471	30713	40313;40314;40315;40316	40313					0.16417974965065696
QQLKWDRKKKR	11	Unmodified	_QQLKWDRKKKR_					0	0	0		ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54	ENSG00000123064|ENST00000306014|DDX54	ENSG00000123064|ENST00000306014|DDX54	MULTI-MSMS	A375_MHC_IP_R1	1	506.04107666015625	3	505.307314	1512.90011	-0.72664	-0.00036717	-0.37264	-0.0001883	-1.0993	-0.00055547	505.3067229767001	148.92	2.012	148.92	147.72	149.73	0					140	54	4	0	0	0	0.73934	2	56679	56679;56893		0	0	1	529140			41425	3820	30471	30713	40317;40318	40317					0.16417974965065696
QQLKWDRKKKR	11	Unmodified	_QQLKWDRKKKR_					0	0	0		ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54	ENSG00000123064|ENST00000306014|DDX54	ENSG00000123064|ENST00000306014|DDX54	MULTI-MSMS	A375_MHC_IP_R2	2	757.8560180664062	2	757.457333	1512.90011	-0.70242	-0.00053205	-0.35159	-0.00026631	-1.054	-0.00079836	757.4565516725241	148.83	2.0014	148.85	147.81	149.81	0.018707					162	62	4	0	0	0	0.73934	2	57577	57577;57985		0	0	1	1069600			41426	3820	30471	30713	40319;40320	40319					0.16417974965065696
QQLLLPVRQ	9	Unmodified	_QQLLLPVRQ_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-SECPEP	A375_MHC_IP_R2	2	548.171630859375	2	547.837665	1093.66078	-0.69864	-0.00038274	0.015722	8.6132E-06	-0.68291	-0.00037413	547.8376300299129	42.946	0.45417	43.719	43.472	43.926	0.7724					13	8	2	0	0	0	0.65246	1	15924	15924		15.847	0	1	1374300			41427	2535	30472	30714	40321	40321					0.11769400013940867
QQLLLQLRRQY	11	Unmodified	_QQLLLQLRRQY_					0	0	0		ENST00000513298.5_1_5:145838810-145849312:+|nuORF;ENST00000507175.5_1_5:145838810-145843302:+|nuORF	ENST00000513298.5_1_5:145838810-145849312:+|nuORF	ENST00000513298.5_1_5:145838810-145849312:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	365.923095703125	4	365.468947	1457.84668	0.010907	3.9862E-06	0.035297	1.29E-05	0.046205	1.6886E-05	365.7196617938285	25.791	0.50526	25.791	25.613	26.118	0					26	9	3	0	0	0	0.73472	1	7599	7599		4.4062	3.9979	1	7347300			41428	12927	30473	30715	40322	40322					0.13607177462631626
QQLLLQLRRQY	11	Unmodified	_QQLLLQLRRQY_					0	0	0		ENST00000513298.5_1_5:145838810-145849312:+|nuORF;ENST00000507175.5_1_5:145838810-145843302:+|nuORF	ENST00000513298.5_1_5:145838810-145849312:+|nuORF	ENST00000513298.5_1_5:145838810-145849312:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	365.8690490722656	4	365.468947	1457.84668	-0.37773	-0.00013805	0.23071	8.4317E-05	-0.14702	-5.373E-05	365.46906994567524	25.041	0.563	25.684	25.465	26.028	0.64368					23	10	3	0	0	0	0.99883	1	8336	8336		4.7159	0.30977	1	6405800			41429	12927	30473	30715	40323	40323					0.13607177462631626
QQLLSHQQQL	10	Unmodified	_QQLLSHQQQL_					0	0	0			REV__ENST00000475066.1_1_7:154759501-154775093:-|nuORF	REV__ENST00000475066.1_1_7:154759501-154775093:-|nuORF	MSMS	A375_MHC_IP_R2	2	611.7263793945312	2	611.830569	1221.64658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.207	1	41.982	41.482	42.482	0.77451								0	0	0	0.15207	1	15282	15282		13.906	3.1065	1		+		41430	20018	30474	30716	40324	40324					0.04462702795012774
QQLQEGTLQEY	11	Unmodified	_QQLQEGTLQEY_					0	0	0		ENSG00000111707|ENST00000543473|SUDS3	ENSG00000111707|ENST00000543473|SUDS3	ENSG00000111707|ENST00000543473|SUDS3	MULTI-SECPEP	A375_MHC_IP_R1	1	445.9610595703125	3	446.217496	1335.63066	-0.36809	-0.00016425	-0.98779	-0.00044077	-1.3559	-0.00060502	446.2172850956169	23.573	0.20388	23.573	23.483	23.687	0					5	3	2	0	0	0	0.98595	1	6467	6467		17.572	12.049	1	3682000			41431	3022	30475	30717	40325	40325					-0.023730482325390767
QQLYKIYDIAK	11	Unmodified	_QQLYKIYDIAK_					0	0	0			REV__ENSG00000198911|ENST00000361204|SREBF2	REV__ENSG00000198911|ENST00000361204|SREBF2	MSMS	A375_MHC_IP_R2	2	461.665771484375	3	461.594127	1381.76055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.94	1	30.639	30.139	31.139	0.69872								0	0	0	0.16291	1	10492	10492		3.5927	0.96144	1		+		41432	22445	30476	30718	40326	40326					0.08494172837231417
QQNPQPLIF	9	Unmodified	_QQNPQPLIF_					0	0	0		ENSG00000110711|ENST00000279146|AIP;AIP|p.A140V|1|0.73|ENSG00000110711|chr11:67489406-67489406|C/T|missense_variant	ENSG00000110711|ENST00000279146|AIP	ENSG00000110711|ENST00000279146|AIP	MULTI-MSMS	A375_MHC_IP_R2	2	543.19189453125	2	542.792924	1083.57129	-0.85157	-0.00046222	1.3228	0.00071799	0.47121	0.00025577	543.2954072159033	96.334	0.65923	97.084	96.754	97.413	0.75045					22	12	2	0	0	0	0.11296	1	36653	36653		48.346	16.04	1	6611300			41433	2941	30477	30719	40327	40327					0.032851453345756454
QQPSCACF	8	Unmodified	_QQPSCACF_					0	0	0		ENST00000294507.3_1_1:31205470-31205635:-|nuORF	ENST00000294507.3_1_1:31205470-31205635:-|nuORF	ENST00000294507.3_1_1:31205470-31205635:-|nuORF	MSMS	A375_MHC_IP_R1	1	442.5747375488281	2	442.175481	882.336409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.922	1	14.922	14.422	15.422	0								0	0	0	0.16876	1	3427	3427		0.79363	0.10326	1				41434	10489	30478	30720	40328	40328					-0.10946611737006151
QQPSCACF	8	Unmodified	_QQPSCACF_					0	0	0		ENST00000294507.3_1_1:31205470-31205635:-|nuORF	ENST00000294507.3_1_1:31205470-31205635:-|nuORF	ENST00000294507.3_1_1:31205470-31205635:-|nuORF	MSMS	A375_MHC_IP_R1	1	442.57464599609375	2	442.175481	882.336409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.57	1	15.57	15.07	16.07	0								0	0	0	0.16876	1	3590	3590		0.79363	0.10326	1				41435	10489	30478	30720	40329	40329					-0.10946611737006151
QQPSCACF	8	Unmodified	_QQPSCACF_					0	0	0		ENST00000294507.3_1_1:31205470-31205635:-|nuORF	ENST00000294507.3_1_1:31205470-31205635:-|nuORF	ENST00000294507.3_1_1:31205470-31205635:-|nuORF	MSMS	A375_MHC_IP_R1	1	442.5752258300781	2	442.175481	882.336409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.809	1	16.809	16.309	17.309	0								0	0	0	0.16876	1	3929	3929		0.79363	0.10326	1				41436	10489	30478	30720	40330	40330					-0.10946611737006151
QQPSCACF	8	Unmodified	_QQPSCACF_					0	0	0		ENST00000294507.3_1_1:31205470-31205635:-|nuORF	ENST00000294507.3_1_1:31205470-31205635:-|nuORF	ENST00000294507.3_1_1:31205470-31205635:-|nuORF	MSMS	A375_MHC_IP_R1	1	442.5751037597656	2	442.175481	882.336409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.484	1	17.484	16.984	17.984	0								0	0	0	0.16876	1	4110	4110		0.79363	0.10326	1				41437	10489	30478	30720	40331	40331					-0.10946611737006151
QQPSCACF	8	Unmodified	_QQPSCACF_					0	0	0		ENST00000294507.3_1_1:31205470-31205635:-|nuORF	ENST00000294507.3_1_1:31205470-31205635:-|nuORF	ENST00000294507.3_1_1:31205470-31205635:-|nuORF	MSMS	A375_MHC_IP_R2	2	442.5750732421875	2	442.175481	882.336409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.019	1	8.4341	7.9341	8.9341	0.4151								0	0	0	0.16876	1	2519	2519		0.79363	0.10326	1				41438	10489	30478	30720	40332	40332					-0.10946611737006151
QQPSCACF	8	Unmodified	_QQPSCACF_					0	0	0		ENST00000294507.3_1_1:31205470-31205635:-|nuORF	ENST00000294507.3_1_1:31205470-31205635:-|nuORF	ENST00000294507.3_1_1:31205470-31205635:-|nuORF	MSMS	A375_MHC_IP_R2	2	442.57464599609375	2	442.175481	882.336409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.573	1	11.071	10.571	11.571	0.49811								0	0	0	0.16876	1	3281	3281		0.79363	0.10326	1				41439	10489	30478	30720	40333	40333					-0.10946611737006151
QQPSCACF	8	Unmodified	_QQPSCACF_					0	0	0		ENST00000294507.3_1_1:31205470-31205635:-|nuORF	ENST00000294507.3_1_1:31205470-31205635:-|nuORF	ENST00000294507.3_1_1:31205470-31205635:-|nuORF	MSMS	A375_MHC_IP_R2	2	442.5748596191406	2	442.175481	882.336409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.381	1	14.954	14.454	15.454	0.573								0	0	0	0.16876	1	4353	4353		0.79363	0.10326	1				41440	10489	30478	30720	40334	40334					-0.10946611737006151
QQQAVMLQQVM	11	Unmodified	_QQQAVMLQQVM_					0	0	0		nc|ENSG00000128573|O15409-5|FOXP2;ENST00000459666.5_1_7:114066566-114268765:+|nuORF	nc|ENSG00000128573|O15409-5|FOXP2	nc|ENSG00000128573|O15409-5|FOXP2	MULTI-SECPEP	A375_MHC_IP_R1	1	652.5031127929688	2	652.32849	1302.64243	-0.2724	-0.00017769	-0.64798	-0.0004227	-0.92038	-0.00060039	652.328158266509	35.968	0.35609	35.968	35.727	36.084	0					8	6	2	0	0	0	0.99955	1	11961	11961		1.1933	0.84271	1	2451300			41441	12152	30479	30721	40335	40335					0.0032115398541918694
QQQAVMLQQVM	11	Unmodified	_QQQAVMLQQVM_					0	0	0		nc|ENSG00000128573|O15409-5|FOXP2;ENST00000459666.5_1_7:114066566-114268765:+|nuORF	nc|ENSG00000128573|O15409-5|FOXP2	nc|ENSG00000128573|O15409-5|FOXP2	MULTI-SECPEP	A375_MHC_IP_R2	2	652.5036010742188	2	652.32849	1302.64243	-1.0168	-0.00066328	0.066959	4.368E-05	-0.94984	-0.00061961	652.3283239903587	35.267	0.30353	36.031	35.829	36.132	0.76338					9	5	2	0	0	0	0.99331	1	12771	12771		5.2969	0.76802	1	1327200			41442	12152	30479	30721	40336	40336					0.0032115398541918694
QQQETETF	8	Unmodified	_QQQETETF_					0	0	0		ENST00000404127.6_1_X:153173185-153186849:-|nuORF;ENSG00000089820|ENST00000350060|ARHGAP4;nc|ENSG00000089820|P98171-2|ARHGAP4;ENST00000494302.5_1_X:153178504-153191656:-|nuORF;ENST00000470209.5_1_X:153178504-153191656:-|nuORF	ENST00000404127.6_1_X:153173185-153186849:-|nuORF	ENST00000404127.6_1_X:153173185-153186849:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	506.1245422363281	2	505.724904	1009.43525	-0.91855	-0.00046453	-0.10896	-5.5106E-05	-1.0275	-0.00051964	505.7248595918536	40.825	0.6611	41.599	41.285	41.946	0.77451					19	12	2	0	0	0	0.76248	1	15127	15127		16.942	0	1	3504000			41443	1936	30480	30722	40337	40337					-0.06908593966750232
QQQQRRQRNKY	11	Unmodified	_QQQQRRQRNKY_					0	0	0			REV__nc|ENSG00000233013|P0CG42|FAM157B	REV__nc|ENSG00000233013|P0CG42|FAM157B	MULTI-SECPEP	A375_MHC_IP_R1	1	383.2764892578125	4	383.959278	1531.808	0.31301	0.00012018	0.69731	0.00026774	1.0103	0.00038793	384.2101840147794	25.229	0.55945	25.229	25.002	25.562	0					17	10	2	0	0	0	1.0004	1	7285	7285		2.6312	1.5215	1	6958800	+		41444	27510	30481	30723	40338	40338					0.06337264880812654
QQQRRRRRRRR	11	Unmodified	_QQQRRRRRRRR_					0	0	0		ENST00000405737.2_2_13:41635036-41635183:-|nuORF	REV__ENST00000405737.2_2_13:41635036-41635183:-|nuORF	REV__ENST00000405737.2_2_13:41635036-41635183:-|nuORF	MSMS	A375_MHC_IP_R2	2	826.2510375976562	2	826.504869	1650.99519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.93	1	120.46	119.96	120.96	0.5321								0	0	0	0.1636	1	45711	45711		0	0	1				41445	24436	30482	30724	40339	40339					0.19572765999487274
QQRFIIEYEPI	11	Unmodified	_QQRFIIEYEPI_					0	0	0			REV__ENSG00000080572|ENST00000372453|DNAAF6	REV__ENSG00000080572|ENST00000372453|DNAAF6	MULTI-MSMS	A375_MHC_IP_R1	1	719.3124389648438	2	718.382634	1434.75072	-0.82886	-0.00059544	-0.14588	-0.0001048	-0.97474	-0.00070024	718.3823508151303	132.94	0.91945	132.94	132.59	133.51	0					41	17	3	0	0	0	0.72949	1	51258	51258		9.3831	2.2814	1	7716200	+		41446	16751	30483	30725	40340	40340					0.050729848318496806
QQRKRLQQQLE	11	Unmodified	_QQRKRLQQQLE_					0	0	0		ENST00000600677.5_1_19:6744980-6751219:+|nuORF;nc|ENSG00000125733|Q15642-4|TRIP10;ENST00000595305.5_1_19:6739772-6750443:+|nuORF;nc|ENSG00000125733|Q15642-2|TRIP10;nc|ENSG00000125733|Q15642-3|TRIP10;ENSG00000125733|ENST00000313244|TRIP10	ENST00000600677.5_1_19:6744980-6751219:+|nuORF	ENST00000600677.5_1_19:6744980-6751219:+|nuORF	MSMS	A375_MHC_IP_R2	2	485.69482421875	3	485.611063	1453.81136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.017	1	59.764	59.264	60.264	0.74714								0	0	0	0.16275	1	22332	22332		4.4062	0	1				41447	3982	30484	30726	40341	40341					0.10260514934793719
QQRQRLWRQFR	11	Unmodified	_QQRQRLWRQFR_					0	0	0		ENST00000600059.5_1_19:48988799-49002658:-|nuORF	ENST00000600059.5_1_19:48988799-49002658:-|nuORF	ENST00000600059.5_1_19:48988799-49002658:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	534.9688110351562	3	534.634313	1600.88111	-0.8147	-0.00043556	1.0499	0.00056132	0.23522	0.00012576	534.6349869598454	80.85	0.30556	80.85	80.642	80.948	0					8	5	2	0	0	0	0.73886	1	29507	29507		0.45452	0.35968	1	987870			41448	13864	30485	30727	40342	40342					0.10470438394031589
QQTLLSPLLR	10	Unmodified	_QQTLLSPLLR_					0	0	0		ENST00000442440.1_1_20:23337408-23337708:-|nuORF	ENST00000442440.1_1_20:23337408-23337708:-|nuORF	ENST00000442440.1_1_20:23337408-23337708:-|nuORF	MSMS	A375_MHC_IP_R2	2	584.7562866210938	2	584.856055	1167.69756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.84	1	130.06	129.56	130.56	0.2142								0	0	0	0.15353	1	51030	51030		9.3831	1.2276	1				41449	11993	30486	30728	40343	40343					0.12041651839831502
QQWRRPRLRRL	11	Unmodified	_QQWRRPRLRRL_					0	0	0		ENSG00000136378|ENST00000388820|ADAMTS7;ENST00000568712.1_1_15:79063704-79103562:-|nuORF;ENST00000566303.5_1_15:79059386-79103601:-|nuORF;ENST00000565793.5_1_15:79069566-79092863:-|nuORF	ENSG00000136378|ENST00000388820|ADAMTS7;ENST00000565793.5_1_15:79069566-79092863:-|nuORF	ENSG00000136378|ENST00000388820|ADAMTS7	MSMS	A375_MHC_IP_R1	1	782.8609008789062	2	782.974016	1563.93348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.91	1	147.91	147.41	148.41	0								0	0	0	0.1636	1	56495	56495		0	0	1				41450	4782;13552	30487	30729	40344	40344					0.1740702152767426
QQWRRPRLRRL	11	Unmodified	_QQWRRPRLRRL_					0	0	0		ENSG00000136378|ENST00000388820|ADAMTS7;ENST00000568712.1_1_15:79063704-79103562:-|nuORF;ENST00000566303.5_1_15:79059386-79103601:-|nuORF;ENST00000565793.5_1_15:79069566-79092863:-|nuORF	ENSG00000136378|ENST00000388820|ADAMTS7;ENST00000565793.5_1_15:79069566-79092863:-|nuORF	ENSG00000136378|ENST00000388820|ADAMTS7	MSMS	A375_MHC_IP_R2	2	782.861083984375	2	782.974016	1563.93348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.97	1	147.99	147.49	148.49	0.018707								0	0	0	0.1636	1	57487	57487		0	0	1				41451	4782;13552	30487	30729	40345	40345					0.1740702152767426
QRAARPPVKSM	11	Unmodified	_QRAARPPVKSM_					0	0	0			REV__ENST00000184956.10_1_17:58150593-58151176:-|nuORF	REV__ENST00000184956.10_1_17:58150593-58151176:-|nuORF	MSMS	A375_MHC_IP_R2	2	620.7062377929688	2	620.850781	1239.68701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.412	1	98.168	97.668	98.668	0.75586								0	0	0	0.16203	1	36973	36973		8.1555	1.4324	1		+		41452	23016	30488	30730	40346	40346					0.07675345913753517
QRALLANAL	9	Unmodified	_QRALLANAL_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	MULTI-MSMS	A375_MHC_IP_R1	1	485.69610595703125	2	485.295633	968.576714	-0.25033	-0.00012148	0.67111	0.00032569	0.42079	0.00020421	485.29585172557984	60.117	0.40721	60.117	59.854	60.261	0					12	7	2	0	0	0	0.03063	1	21634	21634		74.423	23.568	1	3195200			41453	2860	30489	30731	40347	40347					0.09116868917021748
QRALLANAL	9	Unmodified	_QRALLANAL_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	MULTI-SECPEP	A375_MHC_IP_R2	2	485.69482421875	2	485.295633	968.576714	-0.98781	-0.00047938	-0.12418	-6.0265E-05	-1.112	-0.00053964	485.2953590498466	58.965	0.50734	59.712	59.489	59.996	0.74714					17	9	3	0	0	0	0.05755	1	22332	22332		71.134	21.201	1	2722100			41454	2860	30489	30731	40348	40348					0.09116868917021748
QRALLVHDL	9	Unmodified	_QRALLVHDL_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MSMS	A375_MHC_IP_R1	1	355.94525146484375	3	355.545219	1063.61383	0.50915	0.00018103	-0.55847	-0.00019856	-0.049317	-1.7534E-05	355.54497501238984	45.031	0.35609	45.031	44.878	45.234	0					10	6	2	0	0	0	0.69884	1	15779	15779		7.1017	0	1	2577600			41455	14531	30490	30732	40349	40349					0.08456540462793782
QRALLVHDL	9	Unmodified	_QRALLVHDL_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MSMS	A375_MHC_IP_R2	2	355.46002197265625	3	355.545219	1063.61383	-0.034982	-1.2438E-05	-0.5208	-0.00018517	-0.55578	-0.00019761	355.5450186212034	44.01	0.40451	44.779	44.58	44.985	0.7691					13	7	3	0	0	0	0.50892	1	16427	16427		19.362	11.753	1	1846700			41456	14531	30490	30732	40350	40350					0.08456540462793782
QRAQKRLDEWY	11	Unmodified	_QRAQKRLDEWY_					0	0	0			REV__ENST00000467635.6_1_17:28804451-28817236:+|nuORF	REV__ENST00000467635.6_1_17:28804451-28817236:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	498.661376953125	3	498.26003	1491.75826	-0.2954	-0.00014719	1.0155	0.00050597	0.72008	0.00035879	498.261266400268	35.112	0.30591	35.112	34.963	35.269	0					8	5	2	0	0	0	0.99883	1	11672	11672		4.7159	3.3863	1	2609700	+		41457	17542	30491	30733	40351	40351					0.032051371521447436
QRAQQLLQL	9	Unmodified	_QRAQQLLQL_					0	0	0		ENSG00000107816|ENST00000454422|LZTS2	ENSG00000107816|ENST00000454422|LZTS2	ENSG00000107816|ENST00000454422|LZTS2	MULTI-MSMS	A375_MHC_IP_R1	1	549.724365234375	2	549.324922	1096.63529	-0.52824	-0.00029018	0.24456	0.00013434	-0.28368	-0.00015583	549.3247946753688	63.812	0.56162	63.812	63.529	64.09	0					13	10	2	0	0	0	0.41879	1	23112	23112		32.305	5.4218	1	2310600			41458	2761	30492	30734	40352	40352					0.0908392549151813
QRCWPLIQNIP	11	Unmodified	_QRCWPLIQNIP_					0	0	0			REV__ENST00000535831.5_1_12:123319379-123341792:+|nuORF	REV__ENST00000535831.5_1_12:123319379-123341792:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	456.6453552246094	3	456.579935	1366.71798	-0.29048	-0.00013263	0.64779	0.00029577	0.35731	0.00016314	456.5800675121724	31.06	0.25414	31.779	31.669	31.923	0.71857					7	4	2	0	0	0	0.73502	1	10987	10987		4.1166	4.1166	1	1273400	+		41459	25909	30493	30735	40353	40353					0.049284992280263396
QRDEEEEKEV	10	Unmodified	_QRDEEEEKEV_					0	0	0		nc|ENSG00000107949|Q9P287-4|BCCIP;nc|ENSG00000107949|Q9P287-2|BCCIP;nc|ENSG00000107949|Q9P287-3|BCCIP;ENSG00000107949|ENST00000278100|BCCIP	nc|ENSG00000107949|Q9P287-4|BCCIP	nc|ENSG00000107949|Q9P287-4|BCCIP	MULTI-SECPEP	A375_MHC_IP_R2	2	430.13763427734375	3	430.865123	1289.57354	-0.27487	-0.00011843	1.1782	0.00050766	0.90337	0.00038923	430.8656751226049	39.434	0.40569	40.208	40.016	40.422	0.77451					12	7	2	0	0	0	0.93041	1	14626	14626		5.0475	4.122	1	2729800			41460	14532	30494	30736	40354	40354					-0.05966515508976045
QREEQQQRQQE	11	Unmodified	_QREEQQQRQQE_					0	0	0		ENST00000460966.1_1_2:220100429-220100851:+|nuORF;ENST00000477479.5_1_2:220099420-220101164:+|nuORF;ENSG00000163516|ENST00000323348|ANKZF1	ENST00000460966.1_1_2:220100429-220100851:+|nuORF	ENST00000460966.1_1_2:220100429-220100851:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	372.96038818359375	4	372.430284	1485.69203	0.30187	0.00011243	-0.29244	-0.00010891	0.0094379	3.515E-06	372.4302142373903	20.036	0.76256	20.036	19.571	20.334	0					17	14	2	0	0	0	1.0014	1	5071	5071		0.50596	0.41111	1	1220300			41461	6674	30495	30737	40355	40355					-0.03138723480560657
QRFLEVQYL	9	Unmodified	_QRFLEVQYL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R1	1	598.7267456054688	2	598.327131	1194.63971	-0.59491	-0.00035595	0.29324	0.00017545	-0.30167	-0.0001805	598.3273055217849	90.412	0.7627	90.412	90.083	90.845	0					21	14	2	0	0	0	0.28216	1	33247	33247		49.933	13.806	1	2909400			41462	14788	30496	30738	40356	40356					0.050173899144283496
QRFLEVQYL	9	Unmodified	_QRFLEVQYL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R2	2	598.7267456054688	2	598.327131	1194.63971	-0.45377	-0.0002715	-0.75854	-0.00045386	-1.2123	-0.00072536	598.3264527694757	89.603	1.0714	90.335	90.035	91.106	0.7318					24	20	2	0	0	0	0.059859	1	34092	34092		71.922	31.965	1	2932300			41463	14788	30496	30738	40357	40357					0.050173899144283496
QRFLSDHPY	9	Unmodified	_QRFLSDHPY_					0	0	0		ENSG00000106993|ENST00000381854|CDC37L1	ENSG00000106993|ENST00000381854|CDC37L1	ENSG00000106993|ENST00000381854|CDC37L1	MULTI-SECPEP	A375_MHC_IP_R1	1	388.95587158203125	3	388.192845	1161.55671	0.11888	4.6148E-05	0.96678	0.0003753	1.0857	0.00042145	388.52782896402834	28.255	1.1104	28.255	27.735	28.845	0					49	21	4	0	0	0	0.77003	1	8521	8521		11.495	4.393	1	22482000			41464	2720	30497	30739	40358	40358					-0.017609268135629463
QRFPNALFV	9	Unmodified	_QRFPNALFV_					0	0	0		ENSG00000168806|ENST00000305641|LCMT2	ENSG00000168806|ENST00000305641|LCMT2	ENSG00000168806|ENST00000305641|LCMT2	MULTI-SECPEP	A375_MHC_IP_R2	2	546.0346069335938	2	546.303458	1090.59236	-0.72293	-0.00039494	0.12887	7.0401E-05	-0.59406	-0.00032454	546.3035560302535	88.674	2.2809	89.406	88.367	90.648	0.7318					70	44	2	0	0	0	0.061442	1	33713	33713		92.822	44.476	1	36060000			41465	7346	30498	30740	40359	40359					0.050691554340801304
QRFPRILVL	9	Unmodified	_QRFPRILVL_					0	0	0		nc|ENSG00000143258|Q9UK80-3|USP21;ENSG00000143258|ENST00000368002|USP21;ENST00000485277.1_1_1:161133669-161135234:+|nuORF;ENST00000487163.5_1_1:161134308-161135234:+|nuORF	nc|ENSG00000143258|Q9UK80-3|USP21	nc|ENSG00000143258|Q9UK80-3|USP21	MULTI-MSMS	A375_MHC_IP_R1	1	381.64508056640625	3	381.244992	1140.71315	0.15481	5.9021E-05	-0.076722	-2.925E-05	0.07809	2.9771E-05	381.24490503704396	84.336	0.50476	84.336	84.041	84.545	0					18	9	2	0	0	0	0.39434	1	30869	30869		24.991	5.847	1	2521800			41466	5363	30499	30741	40360	40360					0.14841983147562132
QRFPRILVL	9	Unmodified	_QRFPRILVL_					0	0	0		nc|ENSG00000143258|Q9UK80-3|USP21;ENSG00000143258|ENST00000368002|USP21;ENST00000485277.1_1_1:161133669-161135234:+|nuORF;ENST00000487163.5_1_1:161134308-161135234:+|nuORF	nc|ENSG00000143258|Q9UK80-3|USP21	nc|ENSG00000143258|Q9UK80-3|USP21	MULTI-MSMS	A375_MHC_IP_R2	2	381.6449279785156	3	381.244992	1140.71315	-0.020254	-7.7218E-06	0.1795	6.8433E-05	0.15924	6.0711E-05	381.2449705254078	83.107	0.50475	83.847	83.595	84.099	0.73962					22	9	3	0	0	0	0.27064	1	31603	31603		32.786	11.249	1	2965600			41467	5363	30499	30741	40361	40361					0.14841983147562132
QRFRKLMRNYL	11	Unmodified	_QRFRKLMRNYL_					0	0	0			REV__ENSG00000148843|ENST00000369797|PDCD11	REV__ENSG00000148843|ENST00000369797|PDCD11	MSMS	A375_MHC_IP_R1	1	508.89605712890625	3	508.957517	1523.85072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.825	1	82.825	82.325	83.325	0								0	0	0	0.1635	1	30294	30294		0.50596	0	1		+		41468	19651	30500	30742	40362	40362					0.10974943684686878
QRFTDSSKP	9	Unmodified	_QRFTDSSKP_					0	0	0			REV__nc|ENSG00000129680|Q8IWC1-2|MAP7D3	REV__nc|ENSG00000129680|Q8IWC1-2|MAP7D3	MSMS	A375_MHC_IP_R1	1	533.6776733398438	2	533.269813	1064.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.02	1	130.02	129.52	130.52	0								0	0	0	0.15486	1	50019	50019		10.824	2.0785	1		+		41469	18506	30501	30743	40363	40363					-0.00460919567512974
QRGTPSSSPY	10	Unmodified	_QRGTPSSSPY_					0	0	0		ENSG00000170807|ENST00000458573|LMOD2	ENSG00000170807|ENST00000458573|LMOD2	ENSG00000170807|ENST00000458573|LMOD2	MSMS	A375_MHC_IP_R2	2	540.1574096679688	2	540.259445	1078.50434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.12	1	136.23	135.73	136.73	0.11134								0	0	0	0.15451	1	53482	53482		6.2058	0.47393	1				41470	7542	30502	30744	40364	40364					-0.03177509947181534
QRGYGWLL	8	Unmodified	_QRGYGWLL_					0	0	0		ENSG00000119820|ENST00000238831|YIPF4;ENST00000495355.1_1_2:32503224-32515745:+|nuORF	ENSG00000119820|ENST00000238831|YIPF4	ENSG00000119820|ENST00000238831|YIPF4	MULTI-MSMS	A375_MHC_IP_R2	2	497.1688537597656	2	496.769252	991.52395	-0.41148	-0.00020441	-2.0229	-0.0010049	-2.4343	-0.0012093	496.76804542494256	42.522	0.71058	43.294	43.014	43.724	0.7724					20	13	2	0	0	0	0.73946	1	15814	15814		23.148	9.2424	1	3687700			41471	3626	30503	30745	40365	40365					0.027849108542341128
QRHFHGRRWSI	11	Unmodified	_QRHFHGRRWSI_					0	0	0			REV__ENST00000474013.1_1_7:99971734-99973868:+|nuORF	REV__ENST00000474013.1_1_7:99971734-99973868:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	494.19915771484375	3	493.93247	1478.77558	-0.61513	-0.00030383	0.70267	0.00034707	0.087532	4.3235E-05	493.9326136087284	133.53	1.2218	133.53	133.05	134.27	0					57	23	4	0	0	0	1.0002	1	51400	51400		2.8433	2.8433	1	8366500	+		41472	16838	30504	30746	40366	40366					0.05534522268476394
QRHGRALW	8	Unmodified	_QRHGRALW_					0	0	0		ENST00000320640.10_1_16:47493082-47495095:-|nuORF	ENST00000320640.10_1_16:47493082-47495095:-|nuORF	ENST00000320640.10_1_16:47493082-47495095:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	512.6243896484375	2	512.283392	1022.55223	-0.7371	-0.0003776	0.50157	0.00025694	-0.23553	-0.00012066	512.2838672732329	67.466	0.86362	68.202	67.648	68.511	0.73631					21	16	2	0	0	0	0.93416	1	25581	25581		20.871	20.871	1	1559700			41473	10692	30505	30747	40367	40367					0.041856535541683115
QRISQFRRRA	10	Unmodified	_QRISQFRRRA_					0	0	0			REV__MYO5C|p.R880Q|2|0.37|ENSG00000128833|chr15:52239797-52239797|C/T|missense_variant	REV__MYO5C|p.R880Q|2|0.37|ENSG00000128833|chr15:52239797-52239797|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	440.3249816894531	3	439.925204	1316.75378	-0.15587	-6.8573E-05	-0.57146	-0.0002514	-0.72734	-0.00031997	439.92488294275506	136.59	0.46605	136.7	136.55	137.02	0.11133					18	8	3	0	0	0	0.95038	1	53662	53662		0.56317	0.56317	1	2138200	+		41474	27072	30506	30748	40368	40368					0.10807717519878679
QRKDVGGSV	9	Unmodified	_QRKDVGGSV_					0	0	0			REV__ENSG00000124198|ENST00000371917|ARFGEF2	REV__ENSG00000124198|ENST00000371917|ARFGEF2	MSMS	A375_MHC_IP_R1	1	473.1762390136719	2	473.259248	944.503943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.03	1	113.03	112.53	113.53	0								0	0	0	0.15142	1	41430	41430		19.257	1.122	1		+		41475	18281	30507	30749	40369	40369					0.029471151236293736
QRKKGKKRRT	10	Unmodified	_QRKKGKKRRT_					0	0	0			REV__KMT2E|p.D495Rfs*20|1|0.13|ENSG00000005483|chr7:105090125-105090126|-/A|frameshift_variant	REV__KMT2E|p.D495Rfs*20|1|0.13|ENSG00000005483|chr7:105090125-105090126|-/A|frameshift_variant	MSMS	A375_MHC_IP_R2	2	429.2909240722656	3	429.2811	1284.82147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.06	1	149.08	148.58	149.58	0.018707								0	0	0	0.15628	1	57867	57867		0.15932	0.064481	1		+		41476	26867	30508	30750	40370	40370					0.19045167450690315
QRKRLTIWTR	10	Unmodified	_QRKRLTIWTR_					0	0	0			REV__ENST00000373647.8_1_9:125852638-125860044:+|nuORF	REV__ENST00000373647.8_1_9:125852638-125860044:+|nuORF	MSMS	A375_MHC_IP_R1	1	679.4779663085938	2	679.412395	1356.81024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.29	1	147.29	146.79	147.79	0								0	0	0	0.15629	1	56296	56296		0.40072	0	1		+		41477	24096	30509	30751	40371	40371					0.1461034535655017
QRKRRKKRKQH	11	Unmodified	_QRKRRKKRKQH_					0	0	0			REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3	REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3	MULTI-SECPEP	A375_MHC_IP_R2	2	774.2901611328125	2	774.99274	1547.97093	-0.97922	-0.00075889	0.41205	0.00031934	-0.56716	-0.00043955	774.9944448663804	127.54	0.20364	127.81	127.71	127.92	0.26593					5	3	2	0	0	0	1.0014	1	50015	50015		0	0	1	4617100	+		41478	19748	30510	30752	40372	40372					0.21886112793299617
QRLEEIRVNY	10	Unmodified	_QRLEEIRVNY_					0	0	0		tr|U7SZH2|U7SZH2_FUSNUPhenylalanine--tRNAligasealphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheSPE=3SV=1	tr|U7SZH2|U7SZH2_FUSNUPhenylalanine--tRNAligasealphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheSPE=3SV=1	tr|U7SZH2|U7SZH2_FUSNUPhenylalanine--tRNAligasealphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheSPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	440.62518310546875	3	440.573726	1318.69935	-0.46922	-0.00020673	0.10834	4.7734E-05	-0.36088	-0.00015899	440.57375797578203	35.952	0.35664	36.716	36.537	36.894	0.76338					10	6	2	0	0	0	0.9267	1	13056	13056		13.519	0.58997	1	1976900			41479	29861	30511	30753	40373	40373					0.052746608578218
QRLKQFEEK	9	Unmodified	_QRLKQFEEK_					0	0	0			REV__ENSG00000123219|ENST00000396679|CENPK	REV__ENSG00000123219|ENST00000396679|CENPK	MULTI-MSMS	A375_MHC_IP_R2	2	402.933349609375	3	402.559417	1204.65642	-0.31773	-0.00012791	-0.64923	-0.00026136	-0.96697	-0.00038926	402.8944071414567	20.238	0.71089	20.848	20.499	21.21	0.61029					39	13	4	0	0	0	0.67152	1	6321	6321		9.544	1.5986	1	8885600	+		41480	18235	30512	30754	40374	40374					0.062278908003463584
QRLLEVCGRLY	11	Unmodified	_QRLLEVCGRLY_					0	0	0		RFC3|p.R275C|1|0.16|ENSG00000133119|chr13:33835161-33835161|C/T|missense_variant	RFC3|p.R275C|1|0.16|ENSG00000133119|chr13:33835161-33835161|C/T|missense_variant	RFC3|p.R275C|1|0.16|ENSG00000133119|chr13:33835161-33835161|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	450.6690368652344	3	450.583456	1348.72854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.006	1	27.673	27.173	28.173	0.66729								0	0	0	0.16232	1	9185	9185		6.6235	1.5759	1				41481	29066	30513	30755	40375	40375					0.06812481882457178
QRLLFSEMKMK	11	Unmodified	_QRLLFSEMKMK_					0	0	0		ENSG00000227868|ENST00000566855|TEX46;nc|ENSG00000227868|H3BTG2-2|TEX46	ENSG00000227868|ENST00000566855|TEX46	ENSG00000227868|ENST00000566855|TEX46	MULTI-MSMS	A375_MHC_IP_R2	2	471.3240966796875	3	470.924714	1409.75231	-0.44947	-0.00021167	-0.85961	-0.00040481	-1.3091	-0.00061647	470.92432005226993	46.523	0.55956	47.288	46.957	47.517	0.76519					20	10	3	0	0	0	0.73318	1	17453	17453		5.8681	5.8681	1	4267200			41482	9711	30514	30756	40376	40376					0.06382579324576909
QRLLFSEMKMK	11	Unmodified	_QRLLFSEMKMK_					0	0	0		ENSG00000227868|ENST00000566855|TEX46;nc|ENSG00000227868|H3BTG2-2|TEX46	ENSG00000227868|ENST00000566855|TEX46	ENSG00000227868|ENST00000566855|TEX46	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	470.924714	1409.75231	-0.3349	-0.00015771	-0.29994	-0.00014125	-0.63483	-0.00029896	470.92447039076114	47.515	0.50581	47.515	47.263	47.768	0	0.1135	0.00045674	NaN	5.8681	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3433800			41483	9711	30514	30756							0.06382579324576909
QRLLFSEMKMK	11	Unmodified	_QRLLFSEMKMK_					0	0	0		ENSG00000227868|ENST00000566855|TEX46;nc|ENSG00000227868|H3BTG2-2|TEX46	ENSG00000227868|ENST00000566855|TEX46	ENSG00000227868|ENST00000566855|TEX46	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	470.924714	1409.75231	-0.44947	-0.00021167	-0.85961	-0.00040481	-1.3091	-0.00061647	470.92432005226993	46.523	0.55956	47.288	46.957	47.517	0.76519	-0.1135	-0.00033395	NaN	5.8681	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4267200			41484	9711	30514	30756							0.06382579324576909
QRLNFFKSF	9	Unmodified	_QRLNFFKSF_					0	0	0			REV__nc|ENSG00000172748|Q8TC21-2|ZNF596	REV__nc|ENSG00000172748|Q8TC21-2|ZNF596	MULTI-MSMS	A375_MHC_IP_R2	2	396.256103515625	3	396.217102	1185.62948	-0.15639	-6.1965E-05	-0.30019	-0.00011894	-0.45658	-0.0001809	396.551963085362	39.694	0.45737	40.469	40.269	40.727	0.77451					17	8	3	0	0	0	0.4867	1	14666	14666		14.405	4.2548	1	1702300	+		41485	21166	30515	30757	40377	40377					0.04408826979852165
QRLQRRQLWWR	11	Unmodified	_QRLQRRQLWWR_					0	0	0			REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF	REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	406.6149597167969	4	407.23665	1624.9175	-0.34345	-0.00013987	-0.46253	-0.00018836	-0.80598	-0.00032822	407.23646501287726	23.252	0.81308	23.252	22.873	23.687	0					55	15	5	0	0	0	1.0012	1	6345	6345		0.40827	0.40827	1	210090000	+		41486	23216	30516	30758	40378	40378					0.130033152907572
QRLQRRQLWWR	11	Unmodified	_QRLQRRQLWWR_					0	0	0			REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF	REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	407.63616943359375	4	407.23665	1624.9175	0.1547	6.2999E-05	-0.7206	-0.00029346	-0.5659	-0.00023046	407.2363582818796	22.509	0.50752	22.509	22.216	22.723	0					22	9	3	0	0	0	1.0015	1	6031	6031		0.36667	0.36667	1	10319000	+		41487	23216	30516	30758	40379	40379					0.130033152907572
QRLQRRQLWWR	11	Unmodified	_QRLQRRQLWWR_					0	0	0			REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF	REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	543.0453491210938	3	542.646442	1624.9175	-0.70582	-0.00038301	-1.0309	-0.00055943	-1.7367	-0.00094244	542.9801620921622	23.252	0.51014	23.252	23.074	23.584	0					19	9	3	0	0	0	1.0014	1	6359	6359		0.45452	0.45452	1	8115300	+		41488	23216	30516	30758	40380	40380					0.130033152907572
QRLQRRQLWWR	11	Unmodified	_QRLQRRQLWWR_					0	0	0			REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF	REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	542.9523315429688	3	542.646442	1624.9175	-1.1581	-0.00062841	-0.44575	-0.00024188	-1.6038	-0.0008703	542.6461764489441	20.961	0.6076	21.571	21.262	21.869	0.61029					32	11	4	0	0	0	0.73934	4	6491	6491;6541;6584;6587		0	0	1	4086400	+		41489	23216	30516	30758	40381;40382;40383;40384	40381					0.130033152907572
QRLQRRQLWWR	11	Unmodified	_QRLQRRQLWWR_					0	0	0			REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF	REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	543.3799438476562	3	542.646442	1624.9175	-1.1581	-0.00062841	-0.44575	-0.00024188	-1.6038	-0.0008703	542.6461764489441	20.961	0.6076	21.571	21.262	21.869	0.61029					32	11	4	0	0	0	1.0015	1	6541	6541		0	0	1	4086400	+		41490	23216	30516	30758	40385	40385					0.130033152907572
QRLQRRQLWWR	11	Unmodified	_QRLQRRQLWWR_					0	0	0			REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF	REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	542.646442	1624.9175	-1.1706	-0.00063522	-0.93677	-0.00050833	-2.1074	-0.0011436	542.6462691351624	23.019	0.20486	23.649	23.521	23.726	0.63014	0.19872	0.00013038	NaN	0.45452	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2005600	+		41491	23216	30516	30758							0.130033152907572
QRLQRRQLWWR	11	Unmodified	_QRLQRRQLWWR_					0	0	0			REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF	REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		4	407.23665	1624.9175	-0.32993	-0.00013436	-0.91605	-0.00037305	-1.246	-0.00050741	407.23630762266623	23.019	0.30696	23.649	23.47	23.777	0.63014	0.19872	-0.00056499	NaN	0.40827	14	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26693000	+		41492	23216	30516	30758							0.130033152907572
QRLTESVLY	9	Unmodified	_QRLTESVLY_					0	0	0		ENST00000574094.5_1_16:16275679-16317348:-|nuORF;nc|ENSG00000091262|O95255-3|ABCC6;ENSG00000091262|ENST00000205557|ABCC6	ENST00000574094.5_1_16:16275679-16317348:-|nuORF	ENST00000574094.5_1_16:16275679-16317348:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	369.5771179199219	3	370.204751	1107.59242	0.041315	1.5295E-05	-1.122	-0.00041536	-1.0806	-0.00040006	370.2040751881386	23.778	0.50828	23.778	23.533	24.042	0					11	9	2	0	0	0	0.71341	1	6596	6596		12.873	5.7709	1	1258400			41493	1975	30517	30759	40386	40386					0.04293110643448017
QRLTRYHNRDI	11	Unmodified	_QRLTRYHNRDI_					0	0	0			REV__nc|ENSG00000284762|O95263-2|PDE8B	REV__nc|ENSG00000284762|O95263-2|PDE8B	MSMS	A375_MHC_IP_R1	1	736.4130859375	2	736.397473	1470.78039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.44	1	118.44	117.94	118.94	0								0	0	0	0.16273	1	43605	43605		4.5289	0.33936	1		+		41494	17770	30518	30760	40387	40387					0.06383361620555661
QRLTYKLCHI	10	Unmodified	_QRLTYKLCHI_					0	0	0		nc|ENSG00000125207|Q96J94-3|PIWIL1;nc|ENSG00000125207|Q96J94-2|PIWIL1;ENSG00000125207|ENST00000245255|PIWIL1	nc|ENSG00000125207|Q96J94-3|PIWIL1	nc|ENSG00000125207|Q96J94-3|PIWIL1	MULTI-SECPEP	A375_MHC_IP_R2	2	426.3066101074219	3	425.57278	1273.69651	-0.3004	-0.00012784	-1.3052	-0.00055546	-1.6056	-0.0006833	425.90673936152376	36.053	0.56146	36.817	36.537	37.099	0.76338					13	10	2	0	0	0	0.93733	1	13091	13091		5.4027	4.293	1	9172800			41495	3945	30519	30761	40388	40388					0.07061114199291296
QRNFNLRWRRR	11	Unmodified	_QRNFNLRWRRR_					0	0	0			REV__nc|ENSG00000169783|Q96FE5-2|LINGO1	REV__nc|ENSG00000169783|Q96FE5-2|LINGO1	MULTI-MSMS	A375_MHC_IP_R2	2	801.852294921875	2	801.453448	1600.89234	-0.83921	-0.00067259	0.73951	0.00059268	-0.099702	-7.9906E-05	801.45384131092	87.851	0.50873	88.583	88.316	88.825	0.7318					18	9	3	0	0	0	0.73809	1	33475	33475		1.1933	0	1	3102300	+		41496	20943	30520	30762	40389	40389					0.11593260488166379
QRNFNLRWRRR	11	Unmodified	_QRNFNLRWRRR_					0	0	0			REV__nc|ENSG00000169783|Q96FE5-2|LINGO1	REV__nc|ENSG00000169783|Q96FE5-2|LINGO1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	801.453448	1600.89234	-0.31779	-0.00025469	0.55688	0.00044631	0.23909	0.00019162	801.9553801847045	88.459	0.45766	88.459	88.307	88.764	0	-0.061885	-9.4474E-05	NaN	1.1933	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2178300	+		41497	20943	30520	30762							0.11593260488166379
QRNFNLRWRRR	11	Unmodified	_QRNFNLRWRRR_					0	0	0			REV__nc|ENSG00000169783|Q96FE5-2|LINGO1	REV__nc|ENSG00000169783|Q96FE5-2|LINGO1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	801.453448	1600.89234	-0.83921	-0.00067259	0.73951	0.00059268	-0.099702	-7.9906E-05	801.45384131092	87.851	0.50873	88.583	88.316	88.825	0.7318	0.061885	0.00019826	NaN	1.1933	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3102300	+		41498	20943	30520	30762							0.11593260488166379
QRNKIRPNRQ	10	Unmodified	_QRNKIRPNRQ_					0	0	0		nc|ENSG00000128276|O75679-2|RFPL3;ENSG00000128276|ENST00000249007|RFPL3	nc|ENSG00000128276|O75679-2|RFPL3	nc|ENSG00000128276|O75679-2|RFPL3	MULTI-MSMS	A375_MHC_IP_R1	1	655.7820434570312	2	655.381626	1308.7487	-0.79059	-0.00051814	0.67232	0.00044063	-0.11826	-7.7506E-05	655.3819492016537	141.73	2.302	141.73	140.18	142.49	0					61	44	2	0	0	0	0.72014	1	54542	54542		3.2813	1.7994	1	1274300			41499	4128	30521	30763	40390	40390					0.10667413657256475
QRNSILVRDEF	11	Unmodified	_QRNSILVRDEF_					0	0	0		ENST00000538010.5_1_12:122499032-122499182:+|nuORF	ENST00000538010.5_1_12:122499032-122499182:+|nuORF	ENST00000538010.5_1_12:122499032-122499182:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	459.9804992675781	3	459.58088	1375.72081	-0.37088	-0.00017045	-0.19465	-8.9456E-05	-0.56553	-0.0002599	459.58075158302853	24.478	0.65664	24.478	24.296	24.953	0					30	10	4	0	0	0	0.67398	3	6958	6914;6958;7023		17.572	3.3928	1	39183000			41500	13253	30522	30764	40391;40392;40393	40392					0.04798045886491309
QRNSILVRDEF	11	Unmodified	_QRNSILVRDEF_					0	0	0		ENST00000538010.5_1_12:122499032-122499182:+|nuORF	ENST00000538010.5_1_12:122499032-122499182:+|nuORF	ENST00000538010.5_1_12:122499032-122499182:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	459.98046875	3	459.58088	1375.72081	-0.65562	-0.00030131	-0.17106	-7.8617E-05	-0.82668	-0.00037993	459.5807741326001	23.779	0.56068	24.41	24.232	24.792	0.63014					22	10	4	0	0	0	0.61555	1	7708	7708		22.109	5.9717	1	31672000			41501	13253	30522	30764	40394	40394					0.04798045886491309
QRNSILVRDEF	11	Unmodified	_QRNSILVRDEF_					0	0	0		ENST00000538010.5_1_12:122499032-122499182:+|nuORF	ENST00000538010.5_1_12:122499032-122499182:+|nuORF	ENST00000538010.5_1_12:122499032-122499182:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	459.58088	1375.72081	-0.6512	-0.00029928	-0.50904	-0.00023395	-1.1602	-0.00053322	459.5806471291465	24.137	0.25369	24.781	24.653	24.907	0.64368	0.15139	-0.00016176	NaN	17.572	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13544000			41502	13253	30522	30764							0.04798045886491309
QRPRKLTL	8	Unmodified	_QRPRKLTL_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	A375_MHC_IP_R1	1	505.66290283203125	2	506.324725	1010.6349	-0.13366	-6.7677E-05	1.4078	0.00071279	1.2741	0.00064511	506.32580833605334	92.846	0.40563	92.846	92.617	93.023	0					11	7	2	0	0	0	0.96266	1	34082	34082		16.942	0	1	625950			41503	9326	30523	30765	40395	40395					0.13000550562321678
QRPRLLQPY	9	Unmodified	_QRPRLLQPY_					0	0	0		ENST00000432607.1_1_19:41314716-41315658:-|nuORF	ENST00000432607.1_1_19:41314716-41315658:-|nuORF	ENST00000432607.1_1_19:41314716-41315658:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	586.9013671875	2	585.840739	1169.66693	-0.22339	-0.00013087	-0.043392	-2.5421E-05	-0.26679	-0.00015629	585.8406727730835	63.51	0.61326	63.51	63.274	63.887	0					27	11	4	0	0	0	0.72507	1	22982	22982		4.756	0.42677	1	7922300			41504	11879	30524	30766	40396	40396					0.08887918245477522
QRQKNLSWLE	10	Unmodified	_QRQKNLSWLE_					0	0	0		nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1;RAPGEF1|p.K269Qfs*11|1|0.09|ENSG00000107263|chr9:131629139-131629140|-/G|frameshift_variant	nc|ENSG00000107263|Q13905|RAPGEF1	nc|ENSG00000107263|Q13905|RAPGEF1	MULTI-MSMS	A375_MHC_IP_R2	2	434.9459228515625	3	434.570204	1300.68878	-0.23597	-0.00010255	-0.15773	-6.8543E-05	-0.3937	-0.00017109	434.5701892906293	27.598	0.30256	28.276	28.149	28.452	0.67857					10	5	2	0	0	0	0.71946	1	9417	9417		3.5871	0.74377	1	5454200			41505	2733	30525	30767	40397	40397					0.05046678203370902
QRQKNLSWLE	10	Unmodified	_QRQKNLSWLE_					0	0	0		nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1;RAPGEF1|p.K269Qfs*11|1|0.09|ENSG00000107263|chr9:131629139-131629140|-/G|frameshift_variant	nc|ENSG00000107263|Q13905|RAPGEF1	nc|ENSG00000107263|Q13905|RAPGEF1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	434.570204	1300.68878	-0.23597	-0.00010255	-0.15773	-6.8543E-05	-0.3937	-0.00017109	434.5701892906293	27.598	0.30256	28.276	28.149	28.452	0.67857	-0.055185	3.7907E-06	NaN	3.5871	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5454200			41506	2733	30525	30767							0.05046678203370902
QRQPRDLA	8	Unmodified	_QRQPRDLA_					0	0	0			REV__ENST00000464041.5_1_3:195605455-195619614:-|nuORF	REV__ENST00000464041.5_1_3:195605455-195619614:-|nuORF	MSMS	A375_MHC_IP_R1	1	492.19683837890625	2	492.27269	982.530826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.25	1	145.25	144.75	145.75	0								0	0	0	0.16876	1	55683	55683		2.3027	0	1		+		41507	25006	30526	30768	40398	40398					0.03886223734787109
QRQQRQRERYK	11	Unmodified	_QRQQRQRERYK_					0	0	0			REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	MULTI-MSMS	A375_MHC_IP_R2	2	789.0126342773438	2	788.432378	1574.8502	-0.95235	-0.00075086	3.7892	0.0029875	2.8369	0.0022367	788.434680922821	125.05	0.25314	125.38	125.2	125.45	0.32969					6	4	2	0	0	0	0.73698	1	48476	48476		2.4985	1.427	1	37237000	+		41508	17938	30527	30769	40399	40399					0.08577240289150723
QRQQRQRERYK	11	Unmodified	_QRQQRQRERYK_					0	0	0			REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	MULTI-SECPEP	A375_MHC_IP_R2	2	788.8311157226562	2	788.432378	1574.8502	-0.95235	-0.00075086	3.7892	0.0029875	2.8369	0.0022367	788.434680922821	125.05	0.25314	125.38	125.2	125.45	0.32969					6	4	2	0	0	0	0.99507	1	48617	48617		4.5289	2.0304	1	37237000	+		41509	17938	30527	30769	40400	40400					0.08577240289150723
QRQRHVRLHQK	11	Unmodified	_QRQRHVRLHQK_					0	0	0			REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	MULTI-SECPEP	A375_MHC_IP_R1	1	496.7218933105469	3	495.958908	1484.85489	-0.65296	-0.00032384	0.088199	4.3743E-05	-0.56476	-0.0002801	495.9589115151368	133.99	5.3563	133.99	133.56	138.91	0					307	104	6	0	0	0	1.0014	1	52322	52322		0.50596	0.50596	1	506820000	+		41510	27347	30528	30770	40401	40401					0.13186169222581157
QRQRHVRLHQK	11	Unmodified	_QRQRHVRLHQK_					0	0	0			REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	MULTI-MSMS	A375_MHC_IP_R2	2	743.8342895507812	2	743.434724	1484.85489	-0.75809	-0.00056359	0.39137	0.00029096	-0.36672	-0.00027264	743.4348355394042	133.92	3.0565	134.08	133.65	136.71	0.16487					213	59	6	0	0	0	0.73902	1	53449	53449		0.30703	0.30703	1	264310000	+		41511	27347	30528	30770	40402	40402					0.13186169222581157
QRQRRKKTLFF	11	Unmodified	_QRQRRKKTLFF_					0	0	0			REV__ENSG00000177575|ENST00000432237|CD163	REV__ENSG00000177575|ENST00000432237|CD163	MULTI-SECPEP	A375_MHC_IP_R2	2	753.8506469726562	2	754.452051	1506.88955	-0.76241	-0.0005752	0.22085	0.00016662	-0.54156	-0.00040858	754.4516596903966	117.67	0.4038	118.28	117.94	118.34	0.60909					12	7	2	0	0	0	0.99676	1	44526	44526		5.7319	4.25	1	20898000	+		41512	21463	30529	30771	40403	40403					0.1563799231066696
QRRARWRRWWW	11	Unmodified	_QRRARWRRWWW_					0	0	0		ENST00000475204.5_1_1:70687068-70687435:+|nuORF;ENST00000370951.5_1_1:70671397-70687435:+|nuORF;ENST00000463877.1_1_1:70671397-70687435:+|nuORF;ENST00000395136.6_2_1:70687096-70687432:+|nuORF	ENST00000475204.5_1_1:70687068-70687435:+|nuORF	ENST00000475204.5_1_1:70687068-70687435:+|nuORF	MSMS	A375_MHC_IP_R1	1	581.5889892578125	3	581.650297	1741.92906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.105	1	88.105	87.605	88.605	0								0	0	0	0.16358	1	32338	32338		0.094841	0.094841	1				41513	11161	30530	30772	40404	40404					0.08777557104758671
QRRARWRRWWW	11	Unmodified	_QRRARWRRWWW_					0	0	0		ENST00000475204.5_1_1:70687068-70687435:+|nuORF;ENST00000370951.5_1_1:70671397-70687435:+|nuORF;ENST00000463877.1_1_1:70671397-70687435:+|nuORF;ENST00000395136.6_2_1:70687096-70687432:+|nuORF	ENST00000475204.5_1_1:70687068-70687435:+|nuORF	ENST00000475204.5_1_1:70687068-70687435:+|nuORF	MSMS	A375_MHC_IP_R2	2	581.6782836914062	3	581.650297	1741.92906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.481	1	60.228	59.728	60.728	0.74714								0	0	0	0.16358	1	22511	22511		0.094841	0.094841	1				41514	11161	30530	30772	40405	40405					0.08777557104758671
QRRCAWRPWSY	11	Unmodified	_QRRCAWRPWSY_					0	0	0		ENST00000216068.8_1_22:39175605-39178756:-|nuORF;ENST00000406199.3_1_22:39176875-39178747:-|nuORF	ENST00000216068.8_1_22:39175605-39178756:-|nuORF	ENST00000216068.8_1_22:39175605-39178756:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	503.982421875	3	503.58245	1507.72552	-0.70396	-0.0003545	0.47113	0.00023725	-0.23283	-0.00011725	503.58262014270747	30.455	0.35251	30.455	30.251	30.603	0					10	6	2	0	0	0	0.73439	1	9721	9721		4.7159	1.6437	1	3252700			41515	10089	30531	30773	40406	40406					-0.008033484517000034
QRRCAWRPWSY	11	Unmodified	_QRRCAWRPWSY_					0	0	0		ENST00000216068.8_1_22:39175605-39178756:-|nuORF;ENST00000406199.3_1_22:39176875-39178747:-|nuORF	ENST00000216068.8_1_22:39175605-39178756:-|nuORF	ENST00000216068.8_1_22:39175605-39178756:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	503.58245	1507.72552	-0.70396	-0.0003545	0.47113	0.00023725	-0.23283	-0.00011725	503.58262014270747	30.455	0.35251	30.455	30.251	30.603	0	-0.053975	-0.00050004	NaN	4.7159	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3252700			41516	10089	30531	30773							-0.008033484517000034
QRRCAWRPWSY	11	Unmodified	_QRRCAWRPWSY_					0	0	0		ENST00000216068.8_1_22:39175605-39178756:-|nuORF;ENST00000406199.3_1_22:39176875-39178747:-|nuORF	ENST00000216068.8_1_22:39175605-39178756:-|nuORF	ENST00000216068.8_1_22:39175605-39178756:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	503.58245	1507.72552	-1.055	-0.00053127	1.0354	0.00052139	-0.019606	-9.8735E-06	503.5829105568954	29.864	0.35395	30.563	30.385	30.739	0.69872	0.053975	0.00035238	NaN	4.7159	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5378300			41517	10089	30531	30773							-0.008033484517000034
QRRCKLWYFTW	11	Unmodified	_QRRCKLWYFTW_					0	0	0			REV__ENST00000563824.5_1_18:53131352-53252596:-|nuORF	REV__ENST00000563824.5_1_18:53131352-53252596:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	530.007080078125	3	529.606484	1585.79762	-0.47417	-0.00025112	1.0652	0.00056413	0.59103	0.00031301	529.6074353730866	134.42	1.1171	134.56	134.03	135.15	0.13901					47	21	3	0	0	0	0.73809	1	52893	52893		0.40827	0	1	4032000	+		41518	26210	30532	30774	40407	40407					0.028155659019830637
QRRCLLCALKQ	11	Unmodified	_QRRCLLCALKQ_					0	0	0			REV__nc|ENSG00000182872|P98175-4|RBM10	REV__nc|ENSG00000182872|P98175-4|RBM10	MULTI-MSMS	A375_MHC_IP_R1	1	444.9842834472656	3	444.584803	1330.73258	-0.29751	-0.00013227	-0.42394	-0.00018848	-0.72145	-0.00032074	444.5844335434835	131.71	2.1787	131.71	131.07	133.25	0					111	42	4	0	0	0	0.73647	1	50921	50921		2.4348	0	1	33109000	+		41519	21714	30533	30775	40408	40408					0.08044248104511098
QRRKFEFFRL	10	Unmodified	_QRRKFEFFRL_					0	0	0			REV__nc|ENSG00000089177|Q96L93-6|KIF16B	REV__nc|ENSG00000089177|Q96L93-6|KIF16B	MULTI-SECPEP	A375_MHC_IP_R1	1	357.6060485839844	4	357.457111	1425.79934	-0.13999	-5.004E-05	-1.1482	-0.00041043	-1.2882	-0.00046047	357.70752183217814	24.27	0.35507	24.27	24.143	24.498	0					12	6	3	0	0	0	0.94163	1	6834	6834		6.1918	0.32371	1	2991500	+		41520	16907	30534	30776	40409	40409					0.10346942982278051
QRRKKRRLKKR	11	Unmodified	_QRRKKRRLKKR_					0	0	0		ENST00000573539.5_1_17:3442880-3458098:-|nuORF;nc|ENSG00000167723|Q8NET8-3|TRPV3;ENSG00000167723|ENST00000576742|TRPV3;nc|ENSG00000167723|Q8NET8-2|TRPV3	ENST00000573539.5_1_17:3442880-3458098:-|nuORF	ENST00000573539.5_1_17:3442880-3458098:-|nuORF	MSMS	A375_MHC_IP_R1	1	777.0924072265625	2	777.026583	1552.03861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.505	1	45.505	45.005	46.005	0								0	0	0	0.1636	1	15927	15927		0	0	1				41521	7218	30535	30777	40410	40410					0.2846756272408584
QRRKKRRLKKR	11	Unmodified	_QRRKKRRLKKR_					0	0	0		ENST00000573539.5_1_17:3442880-3458098:-|nuORF;nc|ENSG00000167723|Q8NET8-3|TRPV3;ENSG00000167723|ENST00000576742|TRPV3;nc|ENSG00000167723|Q8NET8-2|TRPV3	ENST00000573539.5_1_17:3442880-3458098:-|nuORF	ENST00000573539.5_1_17:3442880-3458098:-|nuORF	MSMS	A375_MHC_IP_R1	1	777.0909423828125	2	777.026583	1552.03861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.605	1	45.605	45.105	46.105	0								0	0	0	0.1636	1	15967	15967		0	0	1				41522	7218	30535	30777	40411	40411					0.2846756272408584
QRRLGRFSREA	11	Unmodified	_QRRLGRFSREA_					0	0	0		ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	459.65960693359375	3	459.260364	1374.75926	-0.47213	-0.00021683	-0.25004	-0.00011483	-0.72216	-0.00033166	459.2599916288057	131.48	1.0622	131.48	130.92	131.98	0					59	20	4	0	0	0	0.7342	2	50595	50595;50827		2.2527	1.143	1	15298000			41523	12966	30536	30778	40412;40413	40412					0.08687396311734119
QRRLGRFSREA	11	Unmodified	_QRRLGRFSREA_					0	0	0		ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	688.7854614257812	2	688.386908	1374.75926	-0.86675	-0.00059666	0.013558	9.3331E-06	-0.8532	-0.00058733	688.386389979804	132.37	1.9295	132.37	131.58	133.51	0					127	37	6	0	0	0	0.73189	2	50979	50979;51194		7.1017	2.2047	1	57612000			41524	12966	30536	30778	40414;40415	40414					0.08687396311734119
QRRLGRFSREA	11	Unmodified	_QRRLGRFSREA_					0	0	0		ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	459.65985107421875	3	459.260364	1374.75926	-0.48578	-0.0002231	-0.4802	-0.00022054	-0.96598	-0.00044364	459.2599768251505	132.39	2.0813	132.39	131.78	133.86	0					105	40	4	0	0	0	0.73189	2	51056	51056;51283		3.5927	2.5791	1	39671000			41525	12966	30536	30778	40416;40417	40416					0.08687396311734119
QRRLGRFSREA	11	Unmodified	_QRRLGRFSREA_					0	0	0		ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	688.78564453125	2	688.386908	1374.75926	-0.65512	-0.00045098	-0.77194	-0.00053139	-1.4271	-0.00098237	688.3862636257763	131.33	1.1195	131.52	130.88	132	0.18953					41	21	2	0	0	0	0.73189	1	51479	51479		7.1017	7.1017	1	26701000			41526	12966	30536	30778	40418	40418					0.08687396311734119
QRRLGRFSREA	11	Unmodified	_QRRLGRFSREA_					0	0	0		ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	459.6596374511719	3	459.260364	1374.75926	-0.3633	-0.00016685	-0.381	-0.00017498	-0.7443	-0.00034183	459.25997221257967	131.37	1.1702	131.56	130.88	132.05	0.18954					62	22	3	0	0	0	0.73494	1	51722	51722		1.9275	0.81775	1	18827000			41527	12966	30536	30778	40419	40419					0.08687396311734119
QRRLGRFSREA	11	Unmodified	_QRRLGRFSREA_					0	0	0		ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	459.65985107421875	3	459.260364	1374.75926	-0.33403	-0.0001534	-0.48622	-0.0002233	-0.82025	-0.00037671	459.2599286119216	132.27	2.1337	132.46	131.9	134.03	0.18953					111	41	4	0	0	0	0.73189	2	52162	51942;52162		3.5927	1.5087	1	32572000			41528	12966	30536	30778	40420;40421	40421					0.08687396311734119
QRRLKEQF	8	Unmodified	_QRRLKEQF_					0	0	0			REV__ENSG00000182179|ENST00000333486|UBA7	REV__ENSG00000182179|ENST00000333486|UBA7	MULTI-MSMS	A375_MHC_IP_R2	2	369.5830993652344	3	368.880602	1103.61998	0.21641	7.9829E-05	-0.28583	-0.00010544	-0.069417	-2.5607E-05	368.88048515823596	32.4	0.56012	33.137	32.857	33.417	0.73692					24	10	3	0	0	0	0.77563	1	11452	11452		10.8	0	1	24594000	+		41529	21676	30537	30779	40422	40422					0.07231058694310377
QRRNFFFRRQR	11	Unmodified	_QRRNFFFRRQR_					0	0	0		ENSG00000172878|ENST00000315796|METAP1D;ENST00000493035.5_1_2:172864861-172928621:+|nuORF	ENSG00000172878|ENST00000315796|METAP1D	ENSG00000172878|ENST00000315796|METAP1D	MSMS	A375_MHC_IP_R2	2	537.68505859375	3	537.634424	1609.88144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.898	1	84.637	84.137	85.137	0.73962								0	0	0	0.16351	1	31891	31891		0.45452	0.046251	1				41530	7740	30538	30780	40423	40423					0.10089858113906303
QRRQLREHPLS	11	Unmodified	_QRRQLREHPLS_					0	0	0		ENST00000425217.5_2_12:118105298-118293285:-|nuORF	ENST00000425217.5_2_12:118105298-118293285:-|nuORF	ENST00000425217.5_2_12:118105298-118293285:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	474.6697998046875	3	473.935769	1418.78548	-0.72856	-0.00034529	-0.31035	-0.00014708	-1.0389	-0.00049237	473.9354160962524	132.92	1.5307	132.92	132.49	134.02	0					81	29	3	0	0	0	0.73378	1	51158	51158		2.4348	0.69251	1	44280000			41531	11787	30539	30781	40424	40424					0.09283665483189907
QRRRHSRHRRI	11	Unmodified	_QRRRHSRHRRI_					0	0	0			REV__ENST00000552421.5_1_14:75230214-75230343:+|nuORF	REV__ENST00000552421.5_1_14:75230214-75230343:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	520.7322387695312	3	519.977185	1556.90972	-0.51149	-0.00026596	0.67459	0.00035077	0.1631	8.481E-05	519.9782712476849	83.251	0.25652	83.251	83.175	83.432	0					5	4	2	0	0	0	1.0014	1	30463	30463		0.50596	0.051438	1	1020100	+		41532	26056	30540	30782	40425	40425					0.15354600813884645
QRRRLRLFEKH	11	Unmodified	_QRRRLRLFEKH_					0	0	0			REV__nc|ENSG00000101958|P23416-3|GLRA2	REV__nc|ENSG00000101958|P23416-3|GLRA2	MSMS	A375_MHC_IP_R1	1	769.6450805664062	2	769.960575	1537.9066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.38	1	117.38	116.88	117.88	0								0	0	0	0.16353	1	43103	43103		0.35063	0	1		+		41533	17193	30541	30783	40426	40426					0.15915912916489106
QRRRRFDRERR	11	Unmodified	_QRRRRFDRERR_					0	0	0			REV__ENST00000488868.1_1_1:28559432-28559522:-|nuORF	REV__ENST00000488868.1_1_1:28559432-28559522:-|nuORF	MSMS	A375_MHC_IP_R1	1	815.953857421875	2	815.964711	1629.91487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.55	1	125.55	125.05	126.05	0								0	0	0	0.16355	1	47813	47813		0.26902	0.26902	1		+		41534	25363	30542	30784	40427	40427					0.12510859885810532
QRRRRYGQKKK	11	Unmodified	_QRRRRYGQKKK_					0	0	0		nc|ENSG00000074696|Q9P035-2|HACD3;ENSG00000074696|ENST00000261875|HACD3	nc|ENSG00000074696|Q9P035-2|HACD3	nc|ENSG00000074696|Q9P035-2|HACD3	MSMS	A375_MHC_IP_R1	1	752.8540649414062	2	752.458199	1502.90185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.17	1	146.17	145.67	146.67	0								0	0	0	0.16354	1	55936	55936		0.30703	0.30703	1				41535	1591	30543	30785	40428	40428					0.17051028773698818
QRRRWMIRALH	11	Unmodified	_QRRRWMIRALH_					0	0	0		ENSG00000186160|ENST00000334194|CYP4Z1	ENSG00000186160|ENST00000334194|CYP4Z1	ENSG00000186160|ENST00000334194|CYP4Z1	MSMS	A375_MHC_IP_R1	1	761.7991943359375	2	761.936045	1521.85754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.41	1	111.41	110.91	111.91	0								0	0	0	0.16334	1	40842	40842		1.3295	0.13619	1				41536	8724	30544	30786	40429	40429					0.11748301355896729
QRRSQQCFSY	10	Unmodified	_QRRSQQCFSY_					0	0	0			REV__nc|ENSG00000104812|P13807-2|GYS1	REV__nc|ENSG00000104812|P13807-2|GYS1	MULTI-SECPEP	A375_MHC_IP_R1	1	652.2037353515625	2	651.804028	1301.5935	-0.31841	-0.00020754	-0.26263	-0.00017118	-0.58104	-0.00037872	651.8036131885971	101.37	0.60664	101.37	101.09	101.7	0					16	11	2	0	0	0	0.60238	1	37260	37260		39.95	6.5048	1	2329100	+		41537	17339	30545	30787	40430	40430					-0.045229982593127716
QRSESFFY	8	Unmodified	_QRSESFFY_					0	0	0			REV__ENSG00000123983|ENST00000357430|ACSL3	REV__ENSG00000123983|ENST00000357430|ACSL3	MULTI-MSMS	A375_MHC_IP_R2	2	532.6432495117188	2	532.245806	1062.47706	-0.72743	-0.00038717	-0.67402	-0.00035875	-1.4015	-0.00074592	532.2436918506334	30.741	0.70733	31.46	31.216	31.923	0.71857					36	13	4	0	0	0	0.77603	1	10823	10823		9.3474	1.1919	1	6310000	+		41538	18265	30546	30788	40431	40431					-0.05167993487566491
QRSIILHLI	9	Unmodified	_QRSIILHLI_					0	0	0		ENSG00000144645|ENST00000396556|OSBPL10;nc|ENSG00000144645|Q9BXB5-2|OSBPL10;OSBPL10|p.S405L|1|0.19|ENSG00000144645|chr3:31702390-31702390|G/A|missense_variant	ENSG00000144645|ENST00000396556|OSBPL10	ENSG00000144645|ENST00000396556|OSBPL10	MULTI-SECPEP	A375_MHC_IP_R1	1	365.3011474609375	3	364.901114	1091.68151	0.15359	5.6047E-05	0.25095	9.1573E-05	0.40455	0.00014762	364.9010990345076	77.108	0.61018	77.108	76.776	77.386	0					16	11	2	0	0	0	0.036758	1	28135	28135		89.401	22.944	1	2265000			41539	5500	30547	30789	40432	40432					0.13933990393616114
QRSIILHLI	9	Unmodified	_QRSIILHLI_					0	0	0		ENSG00000144645|ENST00000396556|OSBPL10;nc|ENSG00000144645|Q9BXB5-2|OSBPL10;OSBPL10|p.S405L|1|0.19|ENSG00000144645|chr3:31702390-31702390|G/A|missense_variant	ENSG00000144645|ENST00000396556|OSBPL10	ENSG00000144645|ENST00000396556|OSBPL10	MULTI-MSMS	A375_MHC_IP_R2	2	365.6358642578125	3	364.901114	1091.68151	0.029846	1.0891E-05	0.47642	0.00017385	0.50626	0.00018474	364.901144636138	75.925	0.55739	76.665	76.385	76.943	0.74052					21	10	3	0	0	0	0.035419	1	28826	28826		70.332	20.778	1	3453700			41540	5500	30547	30789	40433	40433					0.13933990393616114
QRSLEDLVDRC	11	Unmodified	_QRSLEDLVDRC_					0	0	0		ENST00000555759.1_1_14:95904955-95916441:-|nuORF;nc|ENSG00000176438|Q6ZMZ3-2|SYNE3;ENSG00000176438|ENST00000682763|SYNE3	ENST00000555759.1_1_14:95904955-95916441:-|nuORF	ENST00000555759.1_1_14:95904955-95916441:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	444.6505432128906	3	445.222476	1332.6456	-0.46585	-0.00020741	-2.2698	-0.0010106	-2.7357	-0.001218	445.5555158965244	32.972	0.35726	33.709	33.518	33.876	0.73692					8	6	2	0	0	0	0.99732	1	11802	11802		6.6235	0	1	544690			41541	8022	30548	30790	40434	40434					-0.007418796362117064
QRSLLLLQL	9	Unmodified	_QRSLLLLQL_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	A375_MHC_IP_R1	1	542.7471923828125	2	542.347866	1082.68118	-0.31052	-0.00016841	-0.27814	-0.00015085	-0.58866	-0.00031926	542.3475200072445	112.19	0.50896	112.19	112.03	112.53	0					12	9	2	0	0	0	0.33243	1	41148	41148		36.506	0	1	1564000			41542	9113	30549	30791	40435	40435					0.14314570673764138
QRSLLLLQL	9	Unmodified	_QRSLLLLQL_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MATCH	A375_MHC_IP_R2	2		2	542.347866	1082.68118	-0.64952	-0.00035226	0.41009	0.00022241	-0.23943	-0.00012985	542.3477524485126	111.23	0.46269	111.97	111.7	112.16	0.73692	-0.11026	0.0004134	NaN	36.506	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1849700			41543	9113	30549	30791							0.14314570673764138
QRSWEEEEE	9	Unmodified	_QRSWEEEEE_					0	0	0		ENSG00000170893|ENST00000302649|TRH	ENSG00000170893|ENST00000302649|TRH	ENSG00000170893|ENST00000302649|TRH	MSMS	A375_MHC_IP_R1	1	611.2296142578125	2	611.254557	1220.49456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.01	1	122.01	121.51	122.51	0								0	0	0	0.15486	1	45354	45354		2.0598	0	1				41544	7556	30550	30792	40436	40436					-0.10686742743246214
QRTHQPPHW	9	Unmodified	_QRTHQPPHW_					0	0	0			REV__ENST00000441493.6_1_22:18270970-18271342:-|nuORF	REV__ENST00000441493.6_1_22:18270970-18271342:-|nuORF	MSMS	A375_MHC_IP_R2	2	396.1084899902344	3	396.200334	1185.57917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.834	1	46.6	46.1	47.1	0.76519								0	0	0	0.15486	1	17147	17147		7.609	0.97858	1		+		41545	24812	30551	30793	40437	40437					-0.006192826253027306
QRTRQPDPLL	10	Unmodified	_QRTRQPDPLL_					0	0	0			REV__ITIH6|p.G949D|1|0.97|ENSG00000102313|chrX:54757228-54757228|C/T|missense_variant	REV__ITIH6|p.G949D|1|0.97|ENSG00000102313|chrX:54757228-54757228|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	612.3450317382812	2	612.346386	1222.67822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.51	1	122.89	122.39	123.39	0.3766								0	0	0	0.15225	1	46953	46953		15.248	5.8654	1		+		41546	26809	30552	30794	40438	40438					0.07578695548932046
QRTRVPRAESG	11	Unmodified	_QRTRVPRAESG_					0	0	0		ENSG00000011426|ENST00000265748|ANLN;nc|ENSG00000011426|Q9NQW6-2|ANLN	ENSG00000011426|ENST00000265748|ANLN	ENSG00000011426|ENST00000265748|ANLN	MULTI-SECPEP	A375_MHC_IP_R1	1	419.9667053222656	3	419.565453	1255.67453	-0.083966	-3.5229E-05	2.63	0.0011035	2.546	0.0010682	419.56676959701423	24.238	0.45589	24.238	24.042	24.498	0					13	8	2	0	0	0	0.99778	1	6861	6861		6.2344	0.83165	1	4315600			41547	1001	30553	30795	40439	40439					0.05692025775078946
QRTSLIVHV	9	Unmodified	_QRTSLIVHV_					0	0	0		ENSG00000167635|ENST00000443387|ZNF146	ENSG00000167635|ENST00000443387|ZNF146	ENSG00000167635|ENST00000443387|ZNF146	MULTI-MSMS	A375_MHC_IP_R1	1	351.9451599121094	3	351.545219	1051.61383	-0.1326	-4.6617E-05	0.053542	1.8822E-05	-0.079063	-2.7794E-05	351.54513163890005	40.254	0.51001	40.254	39.999	40.509	0					19	9	3	0	0	0	0.04447	1	13834	13834		66.457	28.685	1	4087300			41548	7201	30554	30796	40440	40440					0.09008540462809833
QRTSLIVHV	9	Unmodified	_QRTSLIVHV_					0	0	0		ENSG00000167635|ENST00000443387|ZNF146	ENSG00000167635|ENST00000443387|ZNF146	ENSG00000167635|ENST00000443387|ZNF146	MULTI-MATCH	A375_MHC_IP_R2	2		3	351.545219	1051.61383	-0.34593	-0.00012161	-0.042856	-1.5066E-05	-0.38878	-0.00013667	351.5452033251969	39.295	0.45743	40.07	39.812	40.269	0.77451	-0.091936	-5.0349E-05	NaN	66.457	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2354900			41549	7201	30554	30796							0.09008540462809833
QRTTKSKKKKR	11	Unmodified	_QRTTKSKKKKR_					0	0	0		PRICKLE1|p.G822R|1|0.16|ENSG00000139174|chr12:42459841-42459841|C/T|missense_variant	PRICKLE1|p.G822R|1|0.16|ENSG00000139174|chr12:42459841-42459841|C/T|missense_variant	PRICKLE1|p.G822R|1|0.16|ENSG00000139174|chr12:42459841-42459841|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	695.321533203125	2	694.944059	1387.87356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.66	1	143.69	143.19	144.19	0.024414								0	0	0	0.16353	1	56138	56138		0.35063	0.35063	1				41550	15224	30555	30797	40441	40441					0.19514286073763287
QRVKELLTL	9	Unmodified	_QRVKELLTL_					0	0	0		nc|ENSG00000161533|Q15067|ACOX1;nc|ENSG00000161533|Q15067-3|ACOX1;ENSG00000161533|ENST00000293217|ACOX1	nc|ENSG00000161533|Q15067|ACOX1	nc|ENSG00000161533|Q15067|ACOX1	MULTI-SECPEP	A375_MHC_IP_R1	1	367.9453430175781	3	367.232641	1098.67609	0.19413	7.1291E-05	1.1961	0.00043923	1.3902	0.00051052	367.233122427864	39.466	0.45549	39.466	39.289	39.744	0					12	8	2	0	0	0	0.65246	1	13419	13419		15.248	7.093	1	2664900			41551	14715	30556	30798	40442	40442					0.1307026681113257
QRVKTQEREQI	11	Unmodified	_QRVKTQEREQI_					0	0	0		CON__Q6IFZ6	CON__Q6IFZ6	CON__Q6IFZ6	MULTI-SECPEP	A375_MHC_IP_R1	1	472.6888427734375	3	472.263551	1413.76882	-0.65482	-0.00030925	-1.0878	-0.00051371	-1.7426	-0.00082296	472.2629948410438	131.45	0.65561	131.45	131.13	131.78	0					20	12	2	0	0	0	1.0011	1	50630	50630		1.3296	0	1	2344400		+	41552	624	30557	30799	40443	40443					0.07849119806564886
QRVLPNLLK	9	Unmodified	_QRVLPNLLK_					0	0	0			REV__ENSG00000165238|ENST00000427277|WNK2	REV__ENSG00000165238|ENST00000427277|WNK2	MULTI-MSMS	A375_MHC_IP_R1	1	361.30108642578125	3	360.901114	1079.68151	0.16453	5.9377E-05	-0.43734	-0.00015784	-0.27281	-9.8459E-05	360.9009928898441	25.111	0.6603	25.111	24.953	25.613	0					21	12	2	0	0	0	0.36834	1	7280	7280		26.268	5.8536	1	12346000	+		41553	20564	30558	30800	40444	40444					0.1448599039358669
QRVWDWWHRRR	11	Unmodified	_QRVWDWWHRRR_					0	0	0		ENST00000583780.1_2_17:18263786-18266854:-|nuORF	ENST00000583780.1_2_17:18263786-18266854:-|nuORF	ENST00000583780.1_2_17:18263786-18266854:-|nuORF	MSMS	A375_MHC_IP_R2	2	561.0187377929688	3	560.962541	1679.86579	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.46	1	121.91	121.41	122.41	0.44488								0	0	0	0.16358	1	46457	46457		0.094841	0.094841	1				41554	13699	30559	30801	40445	40445					0.05305571596841219
QRVWDWWHRRR	11	Unmodified	_QRVWDWWHRRR_					0	0	0		ENST00000583780.1_2_17:18263786-18266854:-|nuORF	ENST00000583780.1_2_17:18263786-18266854:-|nuORF	ENST00000583780.1_2_17:18263786-18266854:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	560.4371948242188	3	560.962541	1679.86579	-0.6163	-0.00034572	-2.7489	-0.001542	-3.3652	-0.0018877	560.9608647094678	102.88	0.30569	103.65	103.48	103.79	0.76428					6	5	2	0	0	0	1.0015	1	38930	38930		0	0	1	800490			41555	13699	30559	30801	40446	40446					0.05305571596841219
QRWHVLSI	8	Unmodified	_QRWHVLSI_					0	0	0			REV__nc|ENSG00000148219|O75129-2|ASTN2	REV__nc|ENSG00000148219|O75129-2|ASTN2	MULTI-SECPEP	A375_MHC_IP_R2	2	520.1943969726562	2	519.795801	1037.57705	-1.0749	-0.00055874	-1.6066	-0.0008351	-2.6815	-0.0013938	519.7950924735129	26.211	0.45619	26.871	26.653	27.109	0.65992					13	8	2	0	0	0	0.92636	1	8874	8874		16.942	1.0951	1	2921500	+		41556	19619	30560	30802	40447	40447					0.05976288636884419
QRWREERF	8	Unmodified	_QRWREERF_					0	0	0		ENSG00000184840|ENST00000332598|TMED9;ENST00000513799.5_1_5:177019550-177022414:+|nuORF;ENST00000507723.1_1_5:177021070-177022414:+|nuORF	ENSG00000184840|ENST00000332598|TMED9	ENSG00000184840|ENST00000332598|TMED9	MULTI-SECPEP	A375_MHC_IP_R2	2	402.9213562011719	3	402.875739	1205.60539	-0.034896	-1.4059E-05	-1.5223	-0.0006133	-1.5572	-0.00062736	402.8752724554524	39.892	0.30389	40.667	40.524	40.828	0.77451					9	5	2	0	0	0	0.972	1	14719	14719		3.2813	1.539	1	1253600			41557	8612	30561	30803	40448	40448					0.010809865461624213
QRWRNWQRRKE	11	Unmodified	_QRWRNWQRRKE_					0	0	0		ENST00000291074.9_2_17:505039-505090:-|nuORF	ENST00000291074.9_2_17:505039-505090:-|nuORF	ENST00000291074.9_2_17:505039-505090:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	822.422119140625	2	821.942913	1641.87127	-0.36466	-0.00029973	-4.2456	-0.0034896	-4.6103	-0.0037894	821.9394368699583	128.76	0.5592	128.76	128.43	128.99	0					13	10	2	0	0	0	0.73822	1	49408	49408		1.0715	0.8646	1	9265900			41558	10472	30562	30804	40449	40449					0.07601250388643166
QRWRNWQRRKE	11	Unmodified	_QRWRNWQRRKE_					0	0	0		ENST00000291074.9_2_17:505039-505090:-|nuORF	ENST00000291074.9_2_17:505039-505090:-|nuORF	ENST00000291074.9_2_17:505039-505090:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	821.942913	1641.87127	-0.87955	-0.00072294	-5.534	-0.0045486	-6.4135	-0.0052716	821.9386219912427	128.53	0.40506	128.76	128.6	129.01	0.23946	0.0024098	-0.00010864	NaN	1.0715	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10684000			41559	10472	30562	30804							0.07601250388643166
QRYILYWRKRF	11	Unmodified	_QRYILYWRKRF_					0	0	0		ENSG00000198839|ENST00000361822|ZNF277	ENSG00000198839|ENST00000361822|ZNF277	ENSG00000198839|ENST00000361822|ZNF277	MSMS	A375_MHC_IP_R1	1	543.6443481445312	3	543.643927	1627.90995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.526	1	81.526	81.026	82.026	0								0	0	0	0.16358	1	29794	29794		0.094841	0.021578	1				41560	9344	30563	30805	40450	40450					0.12111162970450096
QRYPMPQNL	9	Unmodified	_QRYPMPQNL_					0	0	0		ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	MULTI-SECPEP	A375_MHC_IP_R1	1	574.1900024414062	2	573.789858	1145.56516	-0.06685	-3.8358E-05	-0.095981	-5.5073E-05	-0.16283	-9.3431E-05	573.7898584618194	51.738	1.0163	51.738	51.27	52.287	0					43	19	4	0	0	0	0.048303	1	18319	18319		92.491	67.092	1	4423300			41561	8163	30564	30806	40451	40451					-0.00179696168584087
QRYPMPQNL	9	Unmodified	_QRYPMPQNL_					0	0	0		ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	MULTI-SECPEP	A375_MHC_IP_R2	2	574.1889038085938	2	573.789858	1145.56516	-0.34503	-0.00019797	-0.18244	-0.00010468	-0.52747	-0.00030266	573.7896741727528	51.05	0.9612	51.804	51.209	52.17	0.75406					31	18	2	0	0	0	0.11849	1	19119	19119		68.081	54.175	1	4544100			41562	8163	30564	30806	40452	40452					-0.00179696168584087
QRYWFMNEHDM	11	Unmodified	_QRYWFMNEHDM_					0	0	0			REV__nc|ENSG00000211753|A0A5B6|TRBV28	REV__nc|ENSG00000211753|A0A5B6|TRBV28	MSMS	A375_MHC_IP_R2	2	778.8234252929688	2	778.824103	1555.63365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.15	1	138.23	137.73	138.73	0.083969								0	0	0	0.16354	1	54186	54186		0.30703	0	1		+		41563	27473	30565	30807	40453	40453					-0.12193819651065496
QRYWYMADHNL	11	Unmodified	_QRYWYMADHNL_					0	0	0			REV__nc|ENSG00000211746|A0A075B6N1|TRBV19	REV__nc|ENSG00000211746|A0A075B6N1|TRBV19	MSMS	A375_MHC_IP_R2	2	499.6408386230469	3	499.562832	1495.66667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.879	1	51.633	51.133	52.133	0.75406								0	0	0	0.16309	1	19140	19140		2.6312	1.3016	1		+		41564	27470	30566	30808	40454	40454					-0.061338695366885077
QSALKNKAKT	10	Unmodified	_QSALKNKAKT_					0	0	0			REV__nc|ENSG00000163535|Q562F6-2|SGO2	REV__nc|ENSG00000163535|Q562F6-2|SGO2	MULTI-MSMS	A375_MHC_IP_R2	2	544.7518310546875	2	544.824755	1087.63496	-0.76995	-0.00041949	0.49455	0.00026944	-0.2754	-0.00015004	544.8247890229621	132.04	1.016	132.23	131.9	132.92	0.18953					39	19	3	0	0	0	0.70925	1	51848	51848		8.1555	0	1	31691000	+		41565	20376	30567	30809	40455	40455					0.09464505771643417
QSALKNKAKT	10	Unmodified	_QSALKNKAKT_					0	0	0			REV__nc|ENSG00000163535|Q562F6-2|SGO2	REV__nc|ENSG00000163535|Q562F6-2|SGO2	MULTI-MATCH	A375_MHC_IP_R1	1		2	544.824755	1087.63496	-0.79847	-0.00043503	0.49637	0.00027043	-0.3021	-0.00016459	544.8247796574693	132.21	1.2188	132.21	131.98	133.2	0	-0.0096611	1.1513E-06	NaN	8.1555	48	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35852000	+		41566	20376	30567	30809							0.09464505771643417
QSCALGHCSL	10	Unmodified	_QSCALGHCSL_					0	0	0		ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	MSMS	A375_MHC_IP_R1	1	509.67120361328125	2	509.725869	1017.43719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.778	1	57.778	57.278	58.278	0								0	0	0	0.15158	1	20738	20738		14.838	3.198	1				41567	1053	30568	30810	40456	40456					-0.07083579754146285
QSDDESFFAPV	11	Unmodified	_QSDDESFFAPV_					0	0	0			REV__nc|ENSG00000104517|O95071-2|UBR5	REV__nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	A375_MHC_IP_R2	2	621.6692504882812	2	621.269675	1240.5248	-1.3145	-0.00081665	0.72766	0.00045208	-0.58682	-0.00036457	621.2699794287113	37.171	0.4553	37.942	37.665	38.12	0.7709					15	8	2	0	0	0	0.38771	1	13584	13584		39.95	1.7741	1	5821600	+		41568	17325	30569	30811	40457	40457					-0.08584384078039875
QSDDRSKVY	9	Unmodified	_QSDDRSKVY_					0	0	0			REV__nc|ENSG00000112697|Q9NV96-3|TMEM30A	REV__nc|ENSG00000112697|Q9NV96-3|TMEM30A	MULTI-SECPEP	A375_MHC_IP_R1	1	549.663818359375	2	549.264727	1096.5149	-0.66775	-0.00036677	-0.32772	-0.00018001	-0.99547	-0.00054678	549.2644200306665	25.614	0.40578	25.614	25.511	25.917	0					11	7	2	0	0	0	0.47674	1	7563	7563		29.841	9.426	1	3190900	+		41569	17748	30570	30812	40458	40458					-0.029495272927533733
QSDDRSKVY	9	Unmodified	_QSDDRSKVY_					0	0	0			REV__nc|ENSG00000112697|Q9NV96-3|TMEM30A	REV__nc|ENSG00000112697|Q9NV96-3|TMEM30A	MULTI-MSMS	A375_MHC_IP_R2	2	549.6858520507812	2	549.264727	1096.5149	-1.2129	-0.00066623	-0.18286	-0.00010044	-1.3958	-0.00076666	549.2648943987571	25.129	0.30773	25.772	25.668	25.976	0.64368					9	5	3	0	0	0	0.22013	1	8320	8320		36.506	10.238	1	2479300	+		41570	17748	30570	30812	40459	40459					-0.029495272927533733
QSDDRSKVY	9	Unmodified	_QSDDRSKVY_					0	0	0			REV__nc|ENSG00000112697|Q9NV96-3|TMEM30A	REV__nc|ENSG00000112697|Q9NV96-3|TMEM30A	MULTI-SECPEP	A375_MHC_IP_R2	2	549.6644897460938	2	549.264727	1096.5149	-1.2129	-0.00066623	-0.18286	-0.00010044	-1.3958	-0.00076666	549.2648943987571	25.129	0.30773	25.772	25.668	25.976	0.64368					9	5	3	0	0	0	0.61452	1	8416	8416		26.268	5.8536	1	2479300	+		41571	17748	30570	30812	40460	40460					-0.029495272927533733
QSDEKWDYHIS	11	Unmodified	_QSDEKWDYHIS_					0	0	0		tr|U7SUA8|U7SUA8_FUSNUEndonuclease/exonuclease/phosphatasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01165PE=3SV=1	tr|U7SUA8|U7SUA8_FUSNUEndonuclease/exonuclease/phosphatasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01165PE=3SV=1	tr|U7SUA8|U7SUA8_FUSNUEndonuclease/exonuclease/phosphatasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01165PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	704.7119750976562	2	704.312406	1406.61026	-0.67342	-0.0004743	0.28486	0.00020063	-0.38856	-0.00027366	704.3125910943463	64.894	0.50664	64.894	64.649	65.156	0					25	9	4	0	0	0	0.82939	1	23475	23475		29.841	0	1	5973800			41572	29750	30571	30813	40461	40461					-0.07678218892374389
QSDEKWDYHIS	11	Unmodified	_QSDEKWDYHIS_					0	0	0		tr|U7SUA8|U7SUA8_FUSNUEndonuclease/exonuclease/phosphatasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01165PE=3SV=1	tr|U7SUA8|U7SUA8_FUSNUEndonuclease/exonuclease/phosphatasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01165PE=3SV=1	tr|U7SUA8|U7SUA8_FUSNUEndonuclease/exonuclease/phosphatasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01165PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	705.2139892578125	2	704.312406	1406.61026	-0.64086	-0.00045137	0.057194	4.0282E-05	-0.58367	-0.00041108	704.3123418278966	64.289	0.56054	65.029	64.699	65.259	0.74022					24	10	3	0	0	0	0.7039	1	24350	24350		15.248	4.449	1	5863700			41573	29750	30571	30813	40462	40462					-0.07678218892374389
QSDILHDAD	9	Unmodified	_QSDILHDAD_					0	0	0		ENSG00000134463|ENST00000379215|ECHDC3	ENSG00000134463|ENST00000379215|ECHDC3	ENSG00000134463|ENST00000379215|ECHDC3	MULTI-MSMS	A375_MHC_IP_R2	2	1014.2413940429688	1	1013.45343	1012.44615	-0.304	-0.00030809	-0.60615	-0.0006143	-0.91014	-0.00092239	1013.453088313548	34.127	0.66133	34.879	34.753	35.414	0.75225					19	12	2	0	0	0	0.65721	1	12293	12293		10.824	2.9138	1	5790800			41574	4579	30572	30814	40463	40463					-0.059571915924834684
QSDKVYEVY	9	Unmodified	_QSDKVYEVY_					0	0	0		ENSG00000156162|ENST00000414645|DPY19L4;DPY19L4|p.I297Rfs*11|1|0.03|ENSG00000156162|chr8:94765200-94765242|AATCTACATATTTTCCCTCTTTCTGGGATATTTACTACAGTTT/-|frameshift_variant;ENST00000456901.1_1_7:145280818-145281352:+|nuORF	ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	MULTI-SECPEP	A375_MHC_IP_R1	1	566.1714477539062	2	565.771854	1129.52915	-0.26992	-0.00015271	-0.13441	-7.6045E-05	-0.40433	-0.00022876	565.7717651560678	40.577	0.76154	40.577	40.151	40.913	0					31	14	4	0	0	0	0.010978	1	13918	13918		106.94	59.191	1	11266000			41575	795	30573	30815	40464	40464					-0.030428748644681036
QSDKVYEVY	9	Unmodified	_QSDKVYEVY_					0	0	0		ENSG00000156162|ENST00000414645|DPY19L4;DPY19L4|p.I297Rfs*11|1|0.03|ENSG00000156162|chr8:94765200-94765242|AATCTACATATTTTCCCTCTTTCTGGGATATTTACTACAGTTT/-|frameshift_variant;ENST00000456901.1_1_7:145280818-145281352:+|nuORF	ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	MULTI-MSMS	A375_MHC_IP_R2	2	566.1715087890625	2	565.771854	1129.52915	-0.47443	-0.00026842	-0.11157	-6.3124E-05	-0.586	-0.00033154	565.7717762824016	39.844	0.50832	40.619	40.371	40.879	0.77451					24	9	3	0	0	0	0.0023519	2	14708	14708;14767		140.63	62.484	1	10880000			41576	795	30573	30815	40465;40466	40465					-0.030428748644681036
QSDLDDQHD	9	Unmodified	_QSDLDDQHD_					0	0	0		ENST00000473217.5_1_17:27902646-27905994:-|nuORF;GIT1|p.K620Rfs*49|1|0.04|ENSG00000108262|chr17:29575437-29575438|TT/-|frameshift_variant;ENSG00000108262|ENST00000225394|GIT1;nc|ENSG00000108262|Q9Y2X7-3|GIT1	ENST00000473217.5_1_17:27902646-27905994:-|nuORF	ENST00000473217.5_1_17:27902646-27905994:-|nuORF	MSMS	A375_MHC_IP_R2	2	536.7101440429688	2	536.712525	1071.4105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.819	1	58.568	58.068	59.068	0.74894								0	0	0	0.15486	1	21866	21866		3.5965	0	1				41577	2790	30574	30816	40467	40467					-0.12235273840133232
QSDMEELEE	9	Unmodified	_QSDMEELEE_					0	0	0			REV__ENSG00000175073|ENST00000310421|VCPIP1	REV__ENSG00000175073|ENST00000310421|VCPIP1	MSMS	A375_MHC_IP_R1	1	555.18603515625	2	555.218794	1108.42303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.039	1	85.039	84.539	85.539	0								0	0	0	0.15468	1	31161	31161		13.906	2.2658	1		+		41578	21322	30575	30817	40468	40468					-0.1268399849209345
QSDPAPLQH	9	Unmodified	_QSDPAPLQH_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000466765.1_1_3:53267112-53269174:-|nuORF;ENST00000460343.5_1_3:53268946-53269411:-|nuORF;ENST00000487660.1_1_3:53268946-53276200:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-SECPEP	A375_MHC_IP_R2	2	497.14300537109375	2	496.743431	991.472308	-0.82488	-0.00040975	-0.078733	-3.911E-05	-0.90361	-0.00044886	496.7433552760948	22.967	0.40843	23.597	23.368	23.777	0.63014					12	7	2	0	0	0	0.036758	1	7336	7336		99.755	44.982	1	6701800			41579	6745	30576	30818	40469	40469					-0.023768776303313643
QSDPKTSLY	9	Unmodified	_QSDPKTSLY_					0	0	0		IBTK|p.Y927Tfs*4|1|0.31|ENSG00000005700|chr6:82201433-82201433|A/-|frameshift_variant;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;ENSG00000005700|ENST00000306270|IBTK	IBTK|p.Y927Tfs*4|1|0.31|ENSG00000005700|chr6:82201433-82201433|A/-|frameshift_variant	IBTK|p.Y927Tfs*4|1|0.31|ENSG00000005700|chr6:82201433-82201433|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	520.1583251953125	2	519.758746	1037.50294	-0.90444	-0.00047009	0.15308	7.9565E-05	-0.75136	-0.00039053	519.7588253680009	29.682	0.59548	29.682	29.504	30.099	0					17	11	2	0	0	0	0.011143	1	9355	9355		125.04	55.933	1	25994000			41580	898	30577	30819	40470	40470					-0.014311440359506378
QSDPKTSLY	9	Unmodified	_QSDPKTSLY_					0	0	0		IBTK|p.Y927Tfs*4|1|0.31|ENSG00000005700|chr6:82201433-82201433|A/-|frameshift_variant;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;ENSG00000005700|ENST00000306270|IBTK	IBTK|p.Y927Tfs*4|1|0.31|ENSG00000005700|chr6:82201433-82201433|A/-|frameshift_variant	IBTK|p.Y927Tfs*4|1|0.31|ENSG00000005700|chr6:82201433-82201433|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	519.6477661132812	2	519.758746	1037.50294	-1.5133	-0.00078653	0.081149	4.2178E-05	-1.4321	-0.00074436	519.7587239061115	29.102	0.65151	29.801	29.584	30.236	0.69872					24	12	3	0	0	0	0.04093	1	10168	10168		67.838	11.661	1	26990000			41581	898	30577	30819	40471	40471					-0.014311440359506378
QSDPTQSGMY	10	Oxidation (M)	_QSDPTQSGM(Oxidation (M))Y_		QSDPTQSGM(1)Y		QSDPTQSGM(280)Y	0	0	1		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-MSMS	A375_MHC_IP_R1	1	565.6267700195312	2	565.226953	1128.43935	-0.69857	-0.00039485	-0.059807	-3.3805E-05	-0.75837	-0.00042865	565.2270356069513	26.092	0.75894	26.092	25.765	26.524	0					70	14	6	0	0	0	5.0915E-42	2	7637	7637;7885		277.12	187.72	1	264800000			41582	2645	30578	30820	40472;40473	40472		119			-0.1197287253532977
QSDPTQSGMY	10	Oxidation (M)	_QSDPTQSGM(Oxidation (M))Y_		QSDPTQSGM(1)Y		QSDPTQSGM(210)Y	0	0	1		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-MSMS	A375_MHC_IP_R1	1	565.6267700195312	2	565.226953	1128.43935	-0.57616	-0.00032566	-0.075691	-4.2783E-05	-0.65185	-0.00036844	565.2269909824681	27.004	2.9796	27.004	26.524	29.504	0					177	58	4	0	0	0	2.1358E-10	2	8126	8126;8378		214.05	114.29	1	115450000			41583	2645	30578	30820	40474;40475	40474		119			-0.1197287253532977
QSDPTQSGMY	10	Oxidation (M)	_QSDPTQSGM(Oxidation (M))Y_		QSDPTQSGM(1)Y		QSDPTQSGM(110)Y	0	0	1		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-MSMS	A375_MHC_IP_R1	1	565.626708984375	2	565.226953	1128.43935	-0.52156	-0.0002948	-0.37939	-0.00021444	-0.90095	-0.00050924	565.226670093994	32.626	2.0302	32.626	31.363	33.393	0					68	39	2	0	0	0	0.011121	3	10626	10069;10230;10626		110.79	65.053	1	3828400			41584	2645	30578	30820	40476;40477;40478	40478		119			-0.1197287253532977
QSDPTQSGMY	10	Oxidation (M)	_QSDPTQSGM(Oxidation (M))Y_		QSDPTQSGM(1)Y		QSDPTQSGM(100)Y	0	0	1		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-MSMS	A375_MHC_IP_R1	1	565.169677734375	2	565.226953	1128.43935	-0.40969	-0.00023157	-0.053399	-3.0182E-05	-0.46309	-0.00026175	565.2268702256497	34.068	1.6697	34.068	33.09	34.759	0					53	32	2	0	0	0	0.0044556	1	11341	11341		100.71	54.969	1	2927800			41585	2645	30578	30820	40479	40479		119			-0.1197287253532977
QSDPTQSGMY	10	Oxidation (M)	_QSDPTQSGM(Oxidation (M))Y_		QSDPTQSGM(1)Y		QSDPTQSGM(80)Y	0	0	1		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-MSMS	A375_MHC_IP_R1	1	565.662841796875	2	565.226953	1128.43935	-0.30684	-0.00017344	-0.12191	-6.8904E-05	-0.42875	-0.00024234	565.2267958284065	35.651	1.8335	35.651	34.81	36.644	0					61	35	2	0	0	0	0.037053	4	12136	11819;12008;12067;12136		79.596	55.402	1	3070100			41586	2645	30578	30820	40480;40481;40482;40483	40483		119			-0.1197287253532977
QSDPTQSGMY	10	Oxidation (M)	_QSDPTQSGM(Oxidation (M))Y_		QSDPTQSGM(1)Y		QSDPTQSGM(95)Y	0	0	1		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-MSMS	A375_MHC_IP_R1	1	564.618896484375	2	565.226953	1128.43935	-0.48079	-0.00027176	-0.23458	-0.00013259	-0.71537	-0.00040435	565.2268701157559	37.042	0.86116	37.042	36.541	37.402	0					33	16	3	0	0	0	0.0065506	2	12469	12379;12469		117.76	68.206	1	5483600			41587	2645	30578	30820	40484;40485	40485		119			-0.1197287253532977
QSDPTQSGMY	10	Oxidation (M)	_QSDPTQSGM(Oxidation (M))Y_		QSDPTQSGM(1)Y		QSDPTQSGM(220)Y	0	0	1		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-MSMS	A375_MHC_IP_R2	2	565.6264038085938	2	565.226953	1128.43935	-0.90213	-0.00050991	-0.003453	-1.9517E-06	-0.90559	-0.00051186	565.227084314365	25.612	0.81304	26.272	25.941	26.754	0.65992					68	15	5	0	0	0	1.6252E-10	3	8499	8499;8560;8755		216.42	136.82	1	245320000			41588	2645	30578	30820	40486;40487;40488	40486		119			-0.1197287253532977
QSDPTQSGMY	10	Oxidation (M)	_QSDPTQSGM(Oxidation (M))Y_		QSDPTQSGM(1)Y		QSDPTQSGM(230)Y	0	0	1		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-MSMS	A375_MHC_IP_R2	2	565.6262817382812	2	565.226953	1128.43935	-0.6901	-0.00039006	-0.11912	-6.7332E-05	-0.80922	-0.0004574	565.2269814381159	26.66	2.5932	27.32	26.602	29.195	0.65992					158	50	5	0	0	0	1.0014E-15	2	8998	8998;9500		230.41	130.65	1	67773000			41589	2645	30578	30820	40489;40490	40489		119			-0.1197287253532977
QSDPTQSGMY	10	Oxidation (M)	_QSDPTQSGM(Oxidation (M))Y_		QSDPTQSGM(1)Y		QSDPTQSGM(100)Y	0	0	1		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-MSMS	A375_MHC_IP_R2	2	565.6264038085938	2	565.226953	1128.43935	-0.48148	-0.00027214	-0.51039	-0.00028848	-0.99186	-0.00056063	565.2266258274466	31.799	1.8311	32.536	31.687	33.518	0.73691					68	35	2	0	0	0	0.0044556	3	11167	11167;11317;11449		110.79	57.389	1	4766700			41590	2645	30578	30820	40491;40492;40493	40491		119			-0.1197287253532977
QSDPTQSGMY	10	Oxidation (M)	_QSDPTQSGM(Oxidation (M))Y_		QSDPTQSGM(1)Y		QSDPTQSGM(110)Y	0	0	1		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-MSMS	A375_MHC_IP_R2	2	565.6266479492188	2	565.226953	1128.43935	-0.67763	-0.00038301	0.13957	7.889E-05	-0.53806	-0.00030412	565.2269590839289	35.15	1.5201	35.913	35.017	36.537	0.76338					58	29	2	0	0	0	0.0086801	2	12486	12387;12486		107.1	57.545	1	3476200			41591	2645	30578	30820	40494;40495	40495		119			-0.1197287253532977
QSDPTQSGMY	10	Oxidation (M)	_QSDPTQSGM(Oxidation (M))Y_		QSDPTQSGM(1)Y		QSDPTQSGM(150)Y	0	0	1		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-MSMS	A375_MHC_IP_R2	2	564.6185913085938	2	565.226953	1128.43935	-0.70034	-0.00039585	-0.25862	-0.00014618	-0.95895	-0.00054203	565.2267686626128	36.457	1.1711	37.228	36.545	37.716	0.7709					50	22	3	0	0	0	0.00093258	2	13288	13126;13288		147.24	76.909	1	9970200			41592	2645	30578	30820	40496;40497	40497		119			-0.1197287253532977
QSDPTQSGMY	10	Unmodified	_QSDPTQSGMY_					0	0	0		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	557.6289672851562	2	557.229496	1112.44444	-0.58782	-0.00032755	0.056965	3.1742E-05	-0.53085	-0.00029581	557.2296429937375	37.022	1.4234	37.022	36.592	38.016	0					82	27	5	0	0	0	0.15631	1	12350	12350		61.09	38.354	1	109360000			41593	2645	30578	30821	40498	40498					-0.10728568672698202
QSDPTQSGMY	10	Unmodified	_QSDPTQSGMY_					0	0	0		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-MSMS	A375_MHC_IP_R2	2	557.2157592773438	2	557.229496	1112.44444	-1.0084	-0.00056189	0.080008	4.4583E-05	-0.92835	-0.0005173	557.2296597938366	36.459	1.8299	37.23	36.24	38.07	0.7709					96	35	5	0	0	0	0.011525	1	13376	13376		117.76	67.828	1	183560000			41594	2645	30578	30821	40499	40499					-0.10728568672698202
QSDPWQQELY	10	Unmodified	_QSDPWQQELY_					0	0	0		ENSG00000072778|ENST00000356839|ACADVL;nc|ENSG00000072778|P49748-3|ACADVL;nc|ENSG00000072778|P49748-2|ACADVL;ENST00000578711.1_1_17:7128236-7128413:+|nuORF;ENST00000578033.1_1_17:7127960-7128413:+|nuORF;ENST00000578319.5_1_17:7127738-7128413:+|nuORF	ENSG00000072778|ENST00000356839|ACADVL	ENSG00000072778|ENST00000356839|ACADVL	MULTI-MSMS	A375_MHC_IP_R2	2	1293.498046875	1	1293.57461	1292.56733	0.3745	0.00048444	-0.4659	-0.00060267	-0.091401	-0.00011823	1293.5741907900008	90.957	0.55658	91.691	91.311	91.868	0.7345					18	10	2	0	0	0	0.00079117	1	34546	34546		148.27	83.033	1	3585800			41595	1546	30579	30822	40500	40500					-0.06724988949804356
QSDPWQQELY	10	Unmodified	_QSDPWQQELY_					0	0	0		ENSG00000072778|ENST00000356839|ACADVL;nc|ENSG00000072778|P49748-3|ACADVL;nc|ENSG00000072778|P49748-2|ACADVL;ENST00000578711.1_1_17:7128236-7128413:+|nuORF;ENST00000578033.1_1_17:7127960-7128413:+|nuORF;ENST00000578319.5_1_17:7127738-7128413:+|nuORF	ENSG00000072778|ENST00000356839|ACADVL	ENSG00000072778|ENST00000356839|ACADVL	MULTI-SECPEP	A375_MHC_IP_R2	2	647.6905517578125	2	647.290942	1292.56733	-0.56551	-0.00036605	-0.12819	-8.2976E-05	-0.6937	-0.00044902	647.290841545661	90.907	0.80992	91.641	91.261	92.071	0.7345					38	15	3	0	0	0	0.018452	1	34550	34550		147.24	84.668	1	20409000			41596	1546	30579	30822	40501	40501					-0.06724988949804356
QSDSFDYLA	9	Unmodified	_QSDSFDYLA_					0	0	0			REV__ENST00000604263.1_1_7:72233822-72234023:+|nuORF	REV__ENST00000604263.1_1_7:72233822-72234023:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	523.6927490234375	2	523.227279	1044.44001	-0.78011	-0.00040817	-1.0725	-0.00056116	-1.8526	-0.00096933	523.2249322061936	34.426	1.317	35.178	34.753	36.07	0.75225					57	25	4	0	0	0	0.12592	1	12391	12391		46.021	13.715	1	3830000	+		41597	26529	30580	30823	40502	40502					-0.08043709823982681
QSDSFDYLA	9	Unmodified	_QSDSFDYLA_					0	0	0			REV__ENST00000604263.1_1_7:72233822-72234023:+|nuORF	REV__ENST00000604263.1_1_7:72233822-72234023:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	523.6246948242188	2	523.227279	1044.44001	-0.78011	-0.00040817	-1.0725	-0.00056116	-1.8526	-0.00096933	523.2249322061936	34.426	1.317	35.178	34.753	36.07	0.75225					57	25	4	0	0	0	0.3213	1	12484	12484		30.637	5.2372	1	3830000	+		41598	26529	30580	30823	40503	40503					-0.08043709823982681
QSDSSLLYR	9	Unmodified	_QSDSSLLYR_					0	0	0			REV__ENSG00000279804|ENST00000624297|PRAMEF18	REV__ENSG00000279804|ENST00000624297|PRAMEF18	MULTI-SECPEP	A375_MHC_IP_R1	1	535.1690673828125	2	534.769645	1067.52474	-0.50683	-0.00027104	-0.077157	-4.1261E-05	-0.58399	-0.0003123	534.7695900597098	20.951	0.71365	20.951	20.485	21.199	0					32	13	3	0	0	0	0.61452	1	5373	5373		15.248	0	1	4183000	+		41599	22986	30581	30824	40504	40504					-0.006323392873810008
QSDTFREGP	9	Unmodified	_QSDTFREGP_					0	0	0			REV__nc|ENSG00000157593|Q8TB61-4|SLC35B2	REV__nc|ENSG00000157593|Q8TB61-4|SLC35B2	MULTI-MSMS	A375_MHC_IP_R2	2	519.6605834960938	2	518.738345	1035.46214	-1.0195	-0.00052885	-1.4249	-0.00073915	-2.4444	-0.001268	518.7382689220403	34.159	3.4486	34.911	32.975	36.424	0.75225					158	67	4	0	0	0	0.61998	1	12359	12359		13.906	0	1	66591000	+		41600	20035	30582	30825	40505	40505					-0.054174853555878144
QSDVIHQSVY	10	Unmodified	_QSDVIHQSVY_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-SECPEP	A375_MHC_IP_R1	1	588.6884155273438	2	588.288202	1174.56185	-0.4111	-0.00024185	1.8649	0.0010971	1.4538	0.00085525	588.2892841972667	38.5	0.56123	38.5	38.168	38.73	0					18	10	2	0	0	0	0.016513	1	13083	13083		132.13	92.185	1	5213500			41601	2697	30583	30826	40506	40506					-0.018446677416022794
QSDVIHQSVY	10	Unmodified	_QSDVIHQSVY_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-SECPEP	A375_MHC_IP_R2	2	588.6895141601562	2	588.288202	1174.56185	-0.7578	-0.00044581	1.1404	0.00067089	0.3826	0.00022508	588.2889513073014	37.813	0.61618	38.587	38.175	38.791	0.77451					25	11	3	0	0	0	0.024643	1	13849	13849		115.06	71.287	1	5897200			41602	2697	30583	30826	40507	40507					-0.018446677416022794
QSDVRYTE	8	Unmodified	_QSDVRYTE_					0	0	0		nc|ENSG00000197893|Q86VF7-4|NRAP;nc|ENSG00000197893|Q86VF7-3|NRAP;ENSG00000197893|ENST00000359988|NRAP;nc|ENSG00000197893|Q86VF7-2|NRAP;NRAP|p.D231G|1|0.59|ENSG00000197893|chr10:113650529-113650529|T/C|missense_variant	nc|ENSG00000197893|Q86VF7-4|NRAP	nc|ENSG00000197893|Q86VF7-4|NRAP	MULTI-MSMS	A375_MHC_IP_R1	1	498.624755859375	2	499.232896	996.451239	-0.32614	-0.00016282	-0.23776	-0.0001187	-0.5639	-0.00028152	499.2327232668832	34.836	1.9844	34.836	34.608	36.592	0					88	38	4	0	0	0	0.72008	2	11548	11548;11672		28.487	1.6032	1	98536000			41603	9207	30584	30827	40508;40509	40508					-0.04712887729863269
QSDYFENSY	9	Unmodified	_QSDYFENSY_					0	0	0			REV__tr|U7SIR8|U7SIR8_FUSNUATP-dependenthelicaseIRC3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02152PE=4SV=1	REV__tr|U7SIR8|U7SIR8_FUSNUATP-dependenthelicaseIRC3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02152PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	577.1277465820312	2	576.727643	1151.44073	-0.076665	-4.4215E-05	0.26836	0.00015477	0.1917	0.00011056	576.7275670240333	62.283	1.0747	62.283	61.994	63.069	0					32	20	3	0	0	0	0.49205	1	22494	22494		27.629	11.782	1	3616400	+		41604	28213	30585	30828	40510	40510					-0.12892915174938935
QSDYFENSY	9	Unmodified	_QSDYFENSY_					0	0	0			REV__tr|U7SIR8|U7SIR8_FUSNUATP-dependenthelicaseIRC3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02152PE=4SV=1	REV__tr|U7SIR8|U7SIR8_FUSNUATP-dependenthelicaseIRC3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02152PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	577.7340087890625	2	576.727643	1151.44073	-0.45523	-0.00026254	-0.33917	-0.00019561	-0.7944	-0.00045815	576.7274333456267	61.812	0.85746	62.554	62.068	62.925	0.74263					34	16	3	0	0	0	0.57432	1	23419	23419		16.149	1.7437	1	4534500	+		41605	28213	30585	30828	40511	40511					-0.12892915174938935
QSDYFENSY	9	Unmodified	_QSDYFENSY_					0	0	0			REV__tr|U7SIR8|U7SIR8_FUSNUATP-dependenthelicaseIRC3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02152PE=4SV=1	REV__tr|U7SIR8|U7SIR8_FUSNUATP-dependenthelicaseIRC3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02152PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	577.1265869140625	2	576.727643	1151.44073	-0.45523	-0.00026254	-0.33917	-0.00019561	-0.7944	-0.00045815	576.7274333456267	61.812	0.85746	62.554	62.068	62.925	0.74263					34	16	3	0	0	0	0.49205	1	23402	23402		34.402	18.555	1	4534500	+		41606	28213	30585	30828	40512	40512					-0.12892915174938935
QSDYFRALY	9	Unmodified	_QSDYFRALY_					0	0	0		ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	MULTI-SECPEP	A375_MHC_IP_R1	1	582.1790161132812	2	581.780013	1161.54547	-0.28012	-0.00016297	-0.59693	-0.00034728	-0.87705	-0.00051025	581.7795855090521	77.097	0.61018	77.097	76.776	77.386	0					27	11	3	0	0	0	0.14554	1	28105	28105		45.7	45.7	1	7231800			41607	1872	30586	30829	40513	40513					-0.028837489077204737
QSDYFRALY	9	Unmodified	_QSDYFRALY_					0	0	0		ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	MULTI-SECPEP	A375_MHC_IP_R2	2	582.1784057617188	2	581.780013	1161.54547	-0.34475	-0.00020057	-0.68699	-0.00039968	-1.0317	-0.00060024	581.7795958262902	76.426	0.76101	77.167	76.64	77.401	0.74052					31	14	3	0	0	0	0.10495	1	28976	28976		53.833	34.576	1	5896700			41608	1872	30586	30829	40514	40514					-0.028837489077204737
QSDYYASYY	9	Unmodified	_QSDYYASYY_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A;SEC16A|p.S1261F|1|0.2|ENSG00000148396|chr9:136468435-136468435|G/A|missense_variant	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MULTI-MSMS	A375_MHC_IP_R1	1	580.6324462890625	2	580.232561	1158.45057	-0.33566	-0.00019476	0.10464	6.0718E-05	-0.23101	-0.00013404	580.232558816218	65.609	0.71474	65.609	65.257	65.972	0					35	13	3	0	0	0	0.085252	2	23731	23731;23794		66.457	33.012	1	8419000			41609	14669	30587	30830	40515;40516	40515					-0.1223172716956924
QSDYYASYY	9	Unmodified	_QSDYYASYY_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A;SEC16A|p.S1261F|1|0.2|ENSG00000148396|chr9:136468435-136468435|G/A|missense_variant	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MULTI-MSMS	A375_MHC_IP_R2	2	580.632080078125	2	580.232561	1158.45057	-0.36401	-0.00021121	-0.0039072	-2.2671E-06	-0.36792	-0.00021348	580.2325128873098	65.144	0.91364	65.882	65.461	66.375	0.73811					48	17	5	0	0	0	0.16286	2	24653	24653;24713		51.63	28.972	1	8982800			41610	14669	30587	30830	40517;40518	40517					-0.1223172716956924
QSEDQADDDED	11	Unmodified	_QSEDQADDDED_					0	0	0			REV__nc|ENSG00000091656|Q86UP3|ZFHX4	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MSMS	A375_MHC_IP_R2	2	633.6875	2	633.715658	1265.41676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.174	1	98.934	98.434	99.434	0.75977								0	0	0	0.16203	1	37249	37249		8.1555	1.9497	1		+		41611	16955	30588	30831	40519	40519					-0.20532845189950422
QSEEARRLLGY	11	Unmodified	_QSEEARRLLGY_					0	0	0		ENSG00000240682|ENST00000393295|ISY1;nc|ENSG00000240682|Q9ULR0-2|ISY1;ENST00000393292.7_1_3:128848926-128853725:-|nuORF	ENSG00000240682|ENST00000393295|ISY1	ENSG00000240682|ENST00000393295|ISY1	MULTI-MSMS	A375_MHC_IP_R1	1	441.6333312988281	3	441.233481	1320.67861	-0.050241	-2.2168E-05	-0.11388	-5.0249E-05	-0.16412	-7.2417E-05	441.2334289099095	42.133	0.50472	42.133	41.982	42.487	0					23	9	4	0	0	0	0.62672	1	14600	14600		21.241	11.477	1	4150200			41612	9776	30589	30832	40520	40520					0.031100704781465538
QSEEARRLLGY	11	Unmodified	_QSEEARRLLGY_					0	0	0		ENSG00000240682|ENST00000393295|ISY1;nc|ENSG00000240682|Q9ULR0-2|ISY1;ENST00000393292.7_1_3:128848926-128853725:-|nuORF	ENSG00000240682|ENST00000393295|ISY1	ENSG00000240682|ENST00000393295|ISY1	MULTI-MSMS	A375_MHC_IP_R2	2	441.63372802734375	3	441.233481	1320.67861	-0.50338	-0.00022211	-0.139	-6.1332E-05	-0.64238	-0.00028344	441.2333916585684	41.449	0.55651	42.223	41.845	42.401	0.77451					22	10	3	0	0	0	0.57632	1	15353	15353		25.155	10.984	1	4676900			41613	9776	30589	30832	40521	40521					0.031100704781465538
QSEEAVAAY	9	Unmodified	_QSEEAVAAY_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-MSMS	A375_MHC_IP_R1	1	484.6219177246094	2	484.221997	966.429441	-0.41944	-0.0002031	0.19014	9.2071E-05	-0.2293	-0.00011103	484.2220556664138	37.837	0.51147	37.837	37.607	38.118	0					13	9	2	0	0	0	0.11629	1	12801	12801		47.749	11.622	1	2336900			41614	5059	30590	30833	40522	40522					-0.05511692478432906
QSEEAVAAY	9	Unmodified	_QSEEAVAAY_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-MSMS	A375_MHC_IP_R2	2	484.62152099609375	2	484.221997	966.429441	-1.1826	-0.00057262	0.3804	0.0001842	-0.80216	-0.00038842	484.2222222718774	37.121	0.45547	37.892	37.716	38.171	0.7709					14	8	2	0	0	0	0.030038	1	13602	13602		74.929	13.572	1	2255200			41615	5059	30590	30833	40523	40523					-0.05511692478432906
QSEEPEGRSY	10	Unmodified	_QSEEPEGRSY_					0	0	0		nc|ENSG00000143217|Q96NY8-2|NECTIN4	nc|ENSG00000143217|Q96NY8-2|NECTIN4	nc|ENSG00000143217|Q96NY8-2|NECTIN4	MULTI-SECPEP	A375_MHC_IP_R2	2	591.1664428710938	2	591.257099	1180.49965	-0.80806	-0.00047777	1.185	0.00070066	0.37699	0.0002229	591.2579962430941	61.956	0.25249	62.699	62.571	62.824	0.74263					7	4	2	0	0	0	0.88918	1	23443	23443		13.042	0	1	990290			41616	14652	30591	30834	40524	40524					-0.08338438880582544
QSEIASMLY	9	Oxidation (M)	_QSEIASM(Oxidation (M))LY_		QSEIASM(1)LY		QSEIASM(100)LY	0	0	1		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000587317.1_1_19:11277236-11281082:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	A375_MHC_IP_R1	1	529.6871337890625	2	529.247157	1056.47976	-0.84779	-0.00044869	0.32594	0.0001725	-0.52185	-0.00027619	529.247296987607	67.113	1.0685	67.113	66.836	67.904	0					40	20	3	0	0	0	0.0090297	3	24305	24305;24327;24338		99.755	44.982	1	10540000			41617	9137	30592	30835	40525;40526;40527	40525		419			-0.046219061449164656
QSEIASMLY	9	Oxidation (M)	_QSEIASM(Oxidation (M))LY_		QSEIASM(1)LY		QSEIASM(96)LY	0	0	1		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000587317.1_1_19:11277236-11281082:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	A375_MHC_IP_R2	2	529.6466674804688	2	529.247157	1056.47976	-0.76425	-0.00040448	0.099962	5.2904E-05	-0.66429	-0.00035157	529.2472090966224	65.936	0.55916	66.674	66.375	66.934	0.73811					28	10	3	0	0	0	0.0099737	2	24976	24976;25087		96.367	60.24	1	7286600			41618	9137	30592	30835	40528;40529	40528		419			-0.046219061449164656
QSEIASMLY	9	Oxidation (M)	_QSEIASM(Oxidation (M))LY_		QSEIASM(1)LY		QSEIASM(110)LY	0	0	1		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000587317.1_1_19:11277236-11281082:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	A375_MHC_IP_R2	2	529.646728515625	2	529.247157	1056.47976	-0.69557	-0.00036813	0.019117	1.0118E-05	-0.67645	-0.00035801	529.2471306299332	66.478	0.66489	67.214	66.932	67.597	0.73631					36	12	4	0	0	0	0.0096896	2	25170	25104;25170		110.67	70.717	1	11172000			41619	9137	30592	30835	40530;40531	40531		419			-0.046219061449164656
QSEIASMLY	9	Unmodified	_QSEIASMLY_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000587317.1_1_19:11277236-11281082:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	A375_MHC_IP_R1	1	521.6490478515625	2	521.2497	1040.48485	-0.52312	-0.00027268	0.34148	0.000178	-0.18164	-9.4679E-05	521.2497281724593	95.943	0.76115	95.943	95.614	96.376	0					33	14	3	0	0	0	0.073067	2	35231	35231;35343		55.503	19.376	1	9607100			41620	9137	30592	30836	40532;40533	40532					-0.03377602282284897
QSEIASMLY	9	Unmodified	_QSEIASMLY_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000587317.1_1_19:11277236-11281082:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	A375_MHC_IP_R2	2	521.64892578125	2	521.2497	1040.48485	-0.37702	-0.00019652	-0.18144	-9.4575E-05	-0.55846	-0.0002911	521.2495873169465	95.214	0.76396	95.964	95.583	96.347	0.75045					32	14	3	0	0	0	0.11715	2	36120	36120;36175		47.594	12.486	1	10282000			41621	9137	30592	30836	40534;40535	40534					-0.03377602282284897
QSEIEEMY	8	Unmodified	_QSEIEEMY_					0	0	0		tr|U7SWD7|U7SWD7_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00991PE=4SV=1	tr|U7SWD7|U7SWD7_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00991PE=4SV=1	tr|U7SWD7|U7SWD7_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00991PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	514.6942749023438	2	514.71569	1027.41683	-0.55039	-0.00028329	0.10219	5.2601E-05	-0.4482	-0.00023069	514.7157127127997	58.039	2.134	58.039	57.313	59.448	0					71	41	2	0	0	0	0.77643	1	21296	21296		7.9102	2.1497	1	1973200			41622	29804	30593	30837	40536	40536					-0.09578471932968569
QSELVGQLY	9	Unmodified	_QSELVGQLY_					0	0	0		nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;nc|ENSG00000087470|O00429-7|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	MULTI-SECPEP	A375_MHC_IP_R1	1	518.197265625	2	518.769114	1035.52368	-0.48717	-0.00025273	-0.061832	-3.2076E-05	-0.549	-0.00028481	518.7690445530815	81.582	0.96042	81.582	81.253	82.214	0					52	18	4	0	0	0	0.010802	1	29835	29835		126.57	71.792	1	30722000			41623	1874	30594	30838	40537	40537					0.007334463437246086
QSELVGQLY	9	Unmodified	_QSELVGQLY_					0	0	0		nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;nc|ENSG00000087470|O00429-7|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	MULTI-SECPEP	A375_MHC_IP_R2	2	518.197021484375	2	518.769114	1035.52368	-0.77984	-0.00040456	-0.23441	-0.0001216	-1.0143	-0.00052616	518.7689631592409	80.881	0.86584	81.626	81.214	82.08	0.74474					47	16	4	0	0	0	0.016309	1	30641	30641		92.653	50.814	1	32726000			41624	1874	30594	30838	40538	40538					0.007334463437246086
QSENIPEV	8	Unmodified	_QSENIPEV_					0	0	0		ENST00000216554.7_1_14:103800513-103800743:+|nuORF	ENST00000216554.7_1_14:103800513-103800743:+|nuORF	ENST00000216554.7_1_14:103800513-103800743:+|nuORF	MSMS	A375_MHC_IP_R1	1	458.1504211425781	2	458.224539	914.434526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.318	1	41.318	40.818	41.818	0								0	0	0	0.16876	1	14256	14256		30.225	3.8835	1				41625	10096	30595	30839	40539	40539					-0.026113886158100286
QSEPESIRKW	10	Unmodified	_QSEPESIRKW_					0	0	0		ENSG00000122705|ENST00000345519|CLTA;nc|ENSG00000122705|P09496-4|CLTA;nc|ENSG00000122705|P09496-3|CLTA;nc|ENSG00000122705|P09496|CLTA	ENSG00000122705|ENST00000345519|CLTA	ENSG00000122705|ENST00000345519|CLTA	MULTI-MSMS	A375_MHC_IP_R1	1	420.9505310058594	3	420.55081	1258.6306	-0.044894	-1.888E-05	0.008716	3.6655E-06	-0.036178	-1.5215E-05	420.5507701777595	28.824	0.50619	28.824	28.592	29.098	0					26	9	4	0	0	0	0.034789	1	8946	8946		80.24	57.465	1	13504000			41626	3802	30596	30840	40540	40540					0.01162996558082341
QSEPESIRKW	10	Unmodified	_QSEPESIRKW_					0	0	0		ENSG00000122705|ENST00000345519|CLTA;nc|ENSG00000122705|P09496-4|CLTA;nc|ENSG00000122705|P09496-3|CLTA;nc|ENSG00000122705|P09496|CLTA	ENSG00000122705|ENST00000345519|CLTA	ENSG00000122705|ENST00000345519|CLTA	MULTI-MSMS	A375_MHC_IP_R2	2	420.9505920410156	3	420.55081	1258.6306	-0.31659	-0.00013314	-0.24448	-0.00010281	-0.56107	-0.00023596	420.55069153695536	28.138	0.50751	28.816	28.604	29.112	0.67857					27	9	4	0	0	0	0.062809	1	9675	9675		72.276	52.65	1	14056000			41627	3802	30596	30840	40541	40541					0.01162996558082341
QSEREYIRY	9	Unmodified	_QSEREYIRY_					0	0	0		ENSG00000048707|ENST00000620676|VPS13D;nc|ENSG00000048707|Q5THJ4-2|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	MULTI-MSMS	A375_MHC_IP_R1	1	415.6072082519531	3	415.207043	1242.5993	0.08714	3.6181E-05	0.20612	8.5582E-05	0.29326	0.00012176	415.20707733398825	27.999	0.40209	27.999	27.786	28.188	0					16	7	3	0	0	0	0.31821	1	8596	8596		29.281	19.737	1	4541000			41628	1216	30597	30841	40542	40542					-0.012295764760210659
QSERQLLLY	9	Unmodified	_QSERQLLLY_					0	0	0		ENST00000575531.5_1_16:4407102-4412712:-|nuORF;ENST00000575714.5_1_16:4408319-4455566:-|nuORF;nc|ENSG00000262246|P57737-2|CORO7;nc|ENSG00000262246|P57737-4|CORO7;ENSG00000262246|ENST00000251166|CORO7;nc|ENSG00000262246|P57737-3|CORO7	ENST00000575531.5_1_16:4407102-4412712:-|nuORF	ENST00000575531.5_1_16:4407102-4412712:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	575.7166137695312	2	575.316763	1148.61897	-0.23651	-0.00013607	-0.87798	-0.00050511	-1.1145	-0.00064118	575.3166310395909	64.522	0.45806	64.522	64.292	64.75	0					15	8	2	0	0	0	0.31976	1	23364	23364		55.503	33.756	1	1513700			41629	9944	30598	30842	40543	40543					0.050607995347718315
QSEYSIHVGP	10	Unmodified	_QSEYSIHVGP_					0	0	0			REV__ENST00000548269.1_1_12:53587490-53588125:-|nuORF	REV__ENST00000548269.1_1_12:53587490-53588125:-|nuORF	MSMS	A375_MHC_IP_R2	2	558.68408203125	2	558.769645	1115.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.26	1	110.01	109.51	110.51	0.74684								0	0	0	0.14864	1	41238	41238		20.415	1.1575	1		+		41630	19169	30599	30843	40544	40544					-0.028403392873769917
QSFALINSA	9	Unmodified	_QSFALINSA_					0	0	0		chr4:189958333-189960748|271|12.44|0.06|7.75|+|2|TE_info:L1ME4b,L1ME4b_dup6056,L1,LINE,donor,-,189958002,189958333|None,FRG1|8	chr4:189958333-189960748|271|12.44|0.06|7.75|+|2|TE_info:L1ME4b,L1ME4b_dup6056,L1,LINE,donor,-,189958002,189958333|None,FRG1|8	chr4:189958333-189960748|271|12.44|0.06|7.75|+|2|TE_info:L1ME4b,L1ME4b_dup6056,L1,LINE,donor,-,189958002,189958333|None,FRG1|8	MSMS	A375_MHC_IP_R2	2	475.6598815917969	2	475.750724	949.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.282	1	41.057	40.557	41.557	0.77451								0	0	0	0.15411	1	14911	14911		14.838	1.3304	1				41631	477	30600	30844	40545	40545					0.010131945178045498
QSFQAGHHYW	10	Unmodified	_QSFQAGHHYW_					0	0	0		ENSG00000141569|ENST00000269383|TRIM65	ENSG00000141569|ENST00000269383|TRIM65	ENSG00000141569|ENST00000269383|TRIM65	MSMS	A375_MHC_IP_R2	2	630.7587280273438	2	630.780879	1259.5472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.066	1	36.831	36.331	37.331	0.76528								0	0	0	0.14983	1	13117	13117		18.146	8.0724	1				41632	5258	30601	30845	40546	40546					-0.07218695099118122
QSFQYDHEAF	10	Unmodified	_QSFQYDHEAF_					0	0	0		ENST00000398357.2_1_13:45965036-45965387:-|nuORF;ENSG00000049449|ENST00000054950|RCN1	ENST00000398357.2_1_13:45965036-45965387:-|nuORF	ENST00000398357.2_1_13:45965036-45965387:-|nuORF	MSMS	A375_MHC_IP_R1	1	636.0156860351562	2	636.27001	1270.52547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.404	1	84.404	83.904	84.904	0								0	0	0	0.15465	1	30915	30915		5.7319	0.97584	1				41633	1220	30602	30846	40547	40547					-0.09897544638329236
QSFRDRGLF	9	Unmodified	_QSFRDRGLF_					0	0	0		ENST00000575251.5_1_17:4047049-4053224:+|nuORF	ENST00000575251.5_1_17:4047049-4053224:+|nuORF	ENST00000575251.5_1_17:4047049-4053224:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	376.2922668457031	3	375.86484	1124.57269	0.36594	0.00013754	-0.31465	-0.00011826	0.051293	1.9279E-05	375.86470416052714	46.238	0.50373	46.238	45.941	46.444	0					14	9	2	0	0	0	0.49701	1	16216	16216		37.771	24.156	1	1569500			41634	13634	30603	30847	40548	40548					0.01538779423322012
QSFYREKWIYV	11	Unmodified	_QSFYREKWIYV_					0	0	0		nc|ENSG00000147364|Q8TCJ0|FBXO25;ENSG00000147364|ENST00000350302|FBXO25	nc|ENSG00000147364|Q8TCJ0|FBXO25	nc|ENSG00000147364|Q8TCJ0|FBXO25	MULTI-MSMS	A375_MHC_IP_R2	2	507.3284912109375	3	506.92951	1517.7667	-0.84594	-0.00042883	-0.4715	-0.00023902	-1.3174	-0.00066785	506.92931180163527	26.866	1.679	27.526	27.262	28.941	0.65992					105	32	4	0	0	0	0.73016	1	9382	9382		8.7518	8.2458	1	28606000			41635	5678	30604	30848	40549	40549					0.028526910687560303
QSFYREKWIYV	11	Unmodified	_QSFYREKWIYV_					0	0	0		nc|ENSG00000147364|Q8TCJ0|FBXO25;ENSG00000147364|ENST00000350302|FBXO25	nc|ENSG00000147364|Q8TCJ0|FBXO25	nc|ENSG00000147364|Q8TCJ0|FBXO25	MULTI-MSMS	A375_MHC_IP_R2	2	506.99053955078125	3	506.92951	1517.7667	-0.9415	-0.00047727	-1.2248	-0.00062088	-2.1663	-0.0010981	507.2632769549258	35.59	0.86195	36.353	35.98	36.842	0.76338					33	16	3	0	0	0	0.73698	3	12884	12884;12945;12995		2.2527	1.0379	1	4953300			41636	5678	30604	30848	40550;40551;40552	40550					0.028526910687560303
QSGSEGERSL	10	Unmodified	_QSGSEGERSL_					0	0	0		SENP3|p.P255S|1|0.24|ENSG00000161956|chr17:7564672-7564672|C/T|missense_variant	SENP3|p.P255S|1|0.24|ENSG00000161956|chr17:7564672-7564672|C/T|missense_variant	SENP3|p.P255S|1|0.24|ENSG00000161956|chr17:7564672-7564672|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	526.2185668945312	2	525.246535	1048.47852	-0.40947	-0.00021507	2.2972	0.0012066	1.8877	0.00099153	525.2481345364912	44.322	0.45622	45.091	44.732	45.188	0.76909					17	8	3	0	0	0	0.68638	1	16549	16549		14.405	0.8975	1	1727000			41637	29134	30605	30849	40553	40553					-0.0437840418946962
QSGSESLLY	9	Unmodified	_QSGSESLLY_					0	0	0		ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4;nc|ENSG00000053900|Q9UJX5-2|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	MULTI-SECPEP	A375_MHC_IP_R1	1	492.6374206542969	2	492.237647	982.460741	-0.34717	-0.00017089	0.067156	3.3057E-05	-0.28002	-0.00013783	492.2376119387535	64.137	0.91389	64.137	63.735	64.649	0					37	17	3	0	0	0	0.20645	1	23165	23165		39.95	0	1	6303700			41638	1252	30606	30850	40554	40554					-0.031191194443181303
QSHHICFW	8	Unmodified	_QSHHICFW_					0	0	0		ZIC1|p.N268H|1|0.22|ENSG00000152977|chr3:147410914-147410914|A/C|missense_variant	ZIC1|p.N268H|1|0.22|ENSG00000152977|chr3:147410914-147410914|A/C|missense_variant	ZIC1|p.N268H|1|0.22|ENSG00000152977|chr3:147410914-147410914|A/C|missense_variant	MSMS	A375_MHC_IP_R1	1	353.1501770019531	3	353.1606	1056.45997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.337	1	91.337	90.837	91.837	0								0	0	0	0.16876	1	33559	33559		1.4819	0.41044	1				41639	30202	30607	30851	40555	40555					-0.06600192574364883
QSHLTPRSL	9	Unmodified	_QSHLTPRSL_					0	0	0			REV__ENST00000431259.6_1_2:179396142-179402334:+|nuORF	REV__ENST00000431259.6_1_2:179396142-179402334:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	520.1892700195312	2	519.788173	1037.56179	-0.37621	-0.00019555	0.7874	0.00040928	0.41119	0.00021373	519.7888816603678	92.223	0.25275	92.223	92.059	92.312	0					5	4	2	0	0	0	0.74412	1	33904	33904		6.2058	0	1	2047300	+		41640	24702	30608	30852	40556	40556					0.04451377049053917
QSIDWEPV	8	Unmodified	_QSIDWEPV_					0	0	0			REV__nc|ENSG00000165271|Q9H6R4-2|NOL6	REV__nc|ENSG00000165271|Q9H6R4-2|NOL6	MSMS	A375_MHC_IP_R2	2	487.1893615722656	2	487.234907	972.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.745	1	47.506	47.006	48.006	0.76128								0	0	0	0.16876	1	17512	17512		18.135	1.1927	1		+		41641	20569	30609	30853	40557	40557					-0.03206798236146824
QSIRIQRML	9	Unmodified	_QSIRIQRML_					0	0	0		ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;ENST00000562140.2_1_16:70398455-70404584:+|nuORF;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	382.6254577636719	3	382.225492	1143.65465	0.27052	0.0001034	-0.21305	-8.1435E-05	0.057463	2.1964E-05	382.2254074475692	46.49	0.55337	46.49	46.094	46.647	0					20	10	3	0	0	0	0.42978	1	16331	16331		42.835	5.7605	1	4227700			41642	6238	30610	30854	40558	40558					0.08856558510774448
QSIRIQRML	9	Unmodified	_QSIRIQRML_					0	0	0		ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;ENST00000562140.2_1_16:70398455-70404584:+|nuORF;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	382.6254577636719	3	382.225492	1143.65465	-0.11374	-4.3475E-05	0.0067163	2.5671E-06	-0.10702	-4.0907E-05	382.2255414084787	45.512	0.45504	46.278	45.997	46.453	0.76519					18	8	3	0	0	0	0.021859	1	17024	17024		81.915	41.676	1	5094800			41643	6238	30610	30854	40559	40559					0.08856558510774448
QSIRIQRML	9	Oxidation (M)	_QSIRIQRM(Oxidation (M))L_		QSIRIQRM(1)L		QSIRIQRM(50)L	0	0	1		ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;ENST00000562140.2_1_16:70398455-70404584:+|nuORF;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	387.9571228027344	3	387.55713	1159.64956	-0.44273	-0.00017159	0.20664	8.0084E-05	-0.2361	-9.1501E-05	387.5572105535366	30.044	0.65799	30.754	30.347	31.005	0.71019					22	12	2	0	0	0	0.10637	1	10550	10550		49.527	22.304	1	4288400			41644	6238	30610	30855	40560	40560		333			0.0761225464814288
QSITSGKHYW	10	Unmodified	_QSITSGKHYW_					0	0	0		nc|ENSG00000132256|Q9C035-2|TRIM5;ENSG00000132256|ENST00000380034|TRIM5	nc|ENSG00000132256|Q9C035-2|TRIM5	nc|ENSG00000132256|Q9C035-2|TRIM5	MULTI-SECPEP	A375_MHC_IP_R2	2	403.2683410644531	3	402.86825	1205.58292	-0.015176	-6.1141E-06	-0.063159	-2.5445E-05	-0.078336	-3.1559E-05	402.86830992586977	31.482	0.46037	32.2	31.872	32.332	0.71857					18	8	3	0	0	0	0.91328	1	11144	11144		11.631	5.8479	1	3560300			41645	4384	30611	30856	40561	40561					-0.011646576421071586
QSKIDDLF	8	Unmodified	_QSKIDDLF_					0	0	0			REV__tr|U7STV3|U7STV3_FUSNUGlutamatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00995PE=3SV=1	REV__tr|U7STV3|U7STV3_FUSNUGlutamatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00995PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	483.6504211425781	2	483.250557	964.486562	-0.26364	-0.0001274	-0.06382	-3.0841E-05	-0.32746	-0.00015824	483.25048426319245	37.17	0.60994	37.17	36.895	37.505	0					39	11	5	0	0	0	0.40488	1	12471	12471		57.471	0	1	24796000	+		41646	28510	30612	30857	40562	40562					0.002897747979432097
QSKQFIPVV	9	Unmodified	_QSKQFIPVV_					0	0	0			REV__ENSG00000078814|ENST00000262873|MYH7B	REV__ENSG00000078814|ENST00000262873|MYH7B	MULTI-SECPEP	A375_MHC_IP_R2	2	523.62060546875	2	523.305667	1044.59678	-0.74866	-0.00039178	-0.087167	-4.5615E-05	-0.83583	-0.00043739	523.305679300483	41.349	0.40496	42.124	41.895	42.3	0.77451					14	7	2	0	0	0	0.75466	1	15262	15262		1.8442	0	1	3089600	+		41647	16720	30613	30858	40563	40563					0.0762661985700106
QSKRNEGYY	9	Unmodified	_QSKRNEGYY_					0	0	0		AKAP11|p.F1434Y|1|0.31|ENSG00000023516|chr13:42303047-42303047|T/A|missense_variant	AKAP11|p.F1434Y|1|0.31|ENSG00000023516|chr13:42303047-42303047|T/A|missense_variant	AKAP11|p.F1434Y|1|0.31|ENSG00000023516|chr13:42303047-42303047|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	572.6163940429688	2	572.772719	1143.53089	-0.5659	-0.00032413	-0.21909	-0.00012549	-0.78499	-0.00044962	572.7726827322314	26.17	0.45696	26.17	25.966	26.423	0					18	8	3	0	0	0	0.69381	1	7681	7681		10.824	0	1	6410000			41648	94	30614	30859	40564	40564					-0.035138210558670835
QSKTAPPTF	9	Unmodified	_QSKTAPPTF_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-MSMS	A375_MHC_IP_R1	1	488.6941833496094	2	488.758549	975.502546	-0.57424	-0.00028066	-0.10339	-5.0535E-05	-0.67763	-0.0003312	488.75845922841967	30.687	0.60602	30.687	30.453	31.059	0					25	11	3	0	0	0	0.010171	1	9738	9738		96.111	14.498	1	5965800			41649	2650	30615	30860	40565	40565					0.013814810348549145
QSKTAPPTF	9	Unmodified	_QSKTAPPTF_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-SECPEP	A375_MHC_IP_R2	2	489.1579895019531	2	488.758549	975.502546	-0.84793	-0.00041443	0.13262	6.482E-05	-0.71531	-0.00034961	488.7586056985598	29.877	0.65913	30.576	30.385	31.044	0.69872					28	12	3	0	0	0	0.011451	1	10470	10470		107.19	36.053	1	5595000			41650	2650	30615	30860	40566	40566					0.013814810348549145
QSKTDKFY	8	Unmodified	_QSKTDKFY_					0	0	0			REV__chr21:45593708-45596391|252|10.67|0.22|5.63|+|1|LINC01694,LINC01694|3	REV__chr21:45593708-45596391|252|10.67|0.22|5.63|+|1|LINC01694,LINC01694|3	MULTI-MSMS	A375_MHC_IP_R1	1	508.72845458984375	2	508.756007	1015.49746	-0.5356	-0.00027249	-0.84739	-0.00043112	-1.383	-0.0007036	508.7555054399845	27.67	0.3541	27.67	27.432	27.786	0					8	6	2	0	0	0	0.77562	1	8458	8458		10.824	1.4408	1	1217000	+		41651	15746	30616	30861	40567	40567					-0.009668228277632807
QSLDQAVGHF	10	Unmodified	_QSLDQAVGHF_					0	0	0			REV__ENSG00000187231|ENST00000428443|SESTD1	REV__ENSG00000187231|ENST00000428443|SESTD1	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2150268554688	2	551.269813	1100.52507	-0.81578	-0.00044971	0.49456	0.00027264	-0.32122	-0.00017708	551.2698311507969	66.978	0.40932	66.978	66.785	67.194	0					12	7	2	0	0	0	0.87043	1	24245	24245		10.8	1.4164	1	1040300	+		41652	22013	30617	30862	40568	40568					-0.021169195675156516
QSLFPLECLSW	11	Unmodified	_QSLFPLECLSW_					0	0	0			REV__nc|ENSG00000038532|Q2KHT3-2|CLEC16A	REV__nc|ENSG00000038532|Q2KHT3-2|CLEC16A	MULTI-SECPEP	A375_MHC_IP_R2	2	442.187744140625	3	441.553163	1321.63766	-0.28047	-0.00012384	-0.93595	-0.00041327	-1.2164	-0.00053711	441.5528731924116	42.318	0.35783	43.09	42.86	43.218	0.7724					11	6	2	0	0	0	0.99945	1	15756	15756		4.1166	2.5243	1	1561800	+		41653	27097	30618	30863	40569	40569					-0.010294068857092498
QSLFPLECLSW	11	Unmodified	_QSLFPLECLSW_					0	0	0			REV__nc|ENSG00000038532|Q2KHT3-2|CLEC16A	REV__nc|ENSG00000038532|Q2KHT3-2|CLEC16A	MULTI-MATCH	A375_MHC_IP_R1	1		3	441.553163	1321.63766	0.13997	6.1805E-05	-0.28643	-0.00012648	-0.14646	-6.467E-05	441.5530816532062	43.09	0.35611	43.09	42.841	43.197	0	-0.00044112	0.0004904	NaN	4.1166	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1095700	+		41654	27097	30618	30863							-0.010294068857092498
QSLIDLSLD	9	Unmodified	_QSLIDLSLD_					0	0	0			REV__USP3|p.P345L|1|0.44|ENSG00000140455|chr15:63574341-63574341|C/T|missense_variant	REV__USP3|p.P345L|1|0.44|ENSG00000140455|chr15:63574341-63574341|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	502.1940002441406	2	502.268947	1002.52334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.129	1	43.129	42.629	43.629	0								0	0	0	0.14767	1	14978	14978		25.399	2.2509	1		+		41655	28968	30619	30864	40570	40570					0.02218026623870628
QSLIRLVH	8	Unmodified	_QSLIRLVH_					0	0	0			REV__ENSG00000102699|ENST00000381989|PARP4	REV__ENSG00000102699|ENST00000381989|PARP4	MULTI-SECPEP	A375_MHC_IP_R1	1	483.6504211425781	2	483.298176	964.581799	-0.45352	-0.00021918	0.5784	0.00027954	0.12488	6.0354E-05	483.29832288519964	36.938	0.4535	36.938	36.745	37.198	0					14	8	2	0	0	0	0.8957	1	12471	12471		21.747	1.293	1	3268300	+		41656	17227	30620	30865	40571	40571					0.09809172779648634
QSLQIFRKW	9	Unmodified	_QSLQIFRKW_					0	0	0		nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENST00000478641.5_1_1:1248876-1249468:-|nuORF;ENST00000470030.6_1_1:1248876-1250311:-|nuORF;ENST00000525164.5_1_1:1248165-1249114:-|nuORF;ENST00000461514.6_1_1:1248044-1249114:-|nuORF;ENST00000485710.5_1_1:1247522-1249186:-|nuORF	nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	MULTI-MSMS	A375_MHC_IP_R1	1	402.9645690917969	3	402.564502	1204.67168	-0.67464	-0.00027158	0.79009	0.00031806	0.11546	4.648E-05	402.56479704372026	67.117	1.0685	67.117	66.836	67.904	0					50	20	4	0	0	0	0.0098876	1	24286	24286		117.84	92.956	1	19865000			41657	4074	30621	30866	40572	40572					0.07752802388222335
QSLQIFRKW	9	Unmodified	_QSLQIFRKW_					0	0	0		nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENST00000478641.5_1_1:1248876-1249468:-|nuORF;ENST00000470030.6_1_1:1248876-1250311:-|nuORF;ENST00000525164.5_1_1:1248165-1249114:-|nuORF;ENST00000461514.6_1_1:1248044-1249114:-|nuORF;ENST00000485710.5_1_1:1247522-1249186:-|nuORF	nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	MULTI-MSMS	A375_MHC_IP_R1	1	603.744140625	2	603.343115	1204.67168	-0.65031	-0.00039236	0.37219	0.00022456	-0.27812	-0.0001678	603.3431714561623	67.124	0.61344	67.124	66.887	67.5	0					25	11	3	0	0	0	0.0089117	1	24314	24314		106.94	68.765	1	4210400			41658	4074	30621	30866	40573	40573					0.07752802388222335
QSLQIFRKW	9	Unmodified	_QSLQIFRKW_					0	0	0		nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENST00000478641.5_1_1:1248876-1249468:-|nuORF;ENST00000470030.6_1_1:1248876-1250311:-|nuORF;ENST00000525164.5_1_1:1248165-1249114:-|nuORF;ENST00000461514.6_1_1:1248044-1249114:-|nuORF;ENST00000485710.5_1_1:1247522-1249186:-|nuORF	nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	MULTI-MSMS	A375_MHC_IP_R2	2	402.9644470214844	3	402.564502	1204.67168	-0.16469	-6.63E-05	0.44845	0.00018053	0.28375	0.00011423	402.5646719704018	66.221	1.1238	66.959	66.526	67.649	0.73811					49	21	4	0	0	0	0.0024528	1	25047	25047		139.78	102.71	1	22805000			41659	4074	30621	30866	40574	40574					0.07752802388222335
QSLTPKFRV	9	Unmodified	_QSLTPKFRV_					0	0	0			REV__CON__Q3T052	REV__CON__Q3T052	MULTI-SECPEP	A375_MHC_IP_R1	1	358.9208679199219	3	359.213469	1074.61858	0.2159	7.7552E-05	1.7674	0.00063489	1.9833	0.00071244	359.21381723677126	20.432	0.81621	20.432	20.079	20.895	0					36	15	4	0	0	0	0.63622	1	5116	5116		24.991	9.7425	1	1782000	+	+	41660	15888	30622	30867	40575	40575					0.0842542460554796
QSLWKYPAPSL	11	Unmodified	_QSLWKYPAPSL_					0	0	0		ENSG00000167323|ENST00000526596|STIM1	ENSG00000167323|ENST00000526596|STIM1	ENSG00000167323|ENST00000526596|STIM1	MSMS	A375_MHC_IP_R2	2	645.378662109375	2	645.348063	1288.68157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97	1	97.756	97.256	98.256	0.75586								0	0	0	0.14837	1	36820	36820		21.537	0	1				41661	7177	30623	30868	40576	40576					0.04877945602947875
QSMLALENEY	10	Unmodified	_QSMLALENEY_					0	0	0			REV__ENSG00000168135|ENST00000303592|KCNJ4	REV__ENSG00000168135|ENST00000303592|KCNJ4	MSMS	A375_MHC_IP_R1	1	599.1884155273438	2	599.276446	1196.53834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.639	1	49.639	49.139	50.139	0								0	0	0	0.14555	1	17560	17560		26.268	0	1		+		41662	20829	30624	30869	40577	40577					-0.05206849570436134
QSNDDDDD	8	Unmodified	_QSNDDDDD_					0	0	0			REV__CON__P31096	REV__CON__P31096	MSMS	A375_MHC_IP_R1	1	462.1527404785156	2	462.146683	922.278813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.496	1	30.496	29.996	30.996	0								0	0	0	0.16876	1	9697	9697		2.3027	1.5091	1		+	+	41663	15864	30625	30870	40578	40578					-0.18543503927901384
QSNDDDDD	8	Unmodified	_QSNDDDDD_					0	0	0			REV__CON__P31096	REV__CON__P31096	MSMS	A375_MHC_IP_R1	1	462.13787841796875	2	462.146683	922.278813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.664	1	74.664	74.164	75.164	0								0	0	0	0.16876	1	27197	27197		2.3027	1.5091	1		+	+	41664	15864	30625	30870	40579	40579					-0.18543503927901384
QSNDDDDD	8	Unmodified	_QSNDDDDD_					0	0	0			REV__CON__P31096	REV__CON__P31096	MSMS	A375_MHC_IP_R2	2	462.1529846191406	2	462.146683	922.278813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.745	1	30.444	29.944	30.944	0.69872								0	0	0	0.16876	1	10411	10411		2.3027	1.5091	1		+	+	41665	15864	30625	30870	40580	40580					-0.18543503927901384
QSNGREAEY	9	Unmodified	_QSNGREAEY_					0	0	0		ENSG00000196411|ENST00000358173|EPHB4;ENST00000487222.5_1_7:100401085-100421908:-|nuORF	ENSG00000196411|ENST00000358173|EPHB4	ENSG00000196411|ENST00000358173|EPHB4	MSMS	A375_MHC_IP_R1	1	527.2357177734375	2	527.233427	1052.4523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.23	1	149.23	148.73	149.73	0								0	0	0	0.15486	1	56966	56966		1.8442	0	1				41666	9037	30626	30871	40581	40581					-0.07182673360944136
QSNSIQIQW	9	Unmodified	_QSNSIQIQW_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000488459.1_1_X:53560966-53561563:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	A375_MHC_IP_R1	1	552.6781005859375	2	552.277638	1102.54072	-0.33571	-0.0001854	0.5168	0.00028541	0.18109	0.00010001	552.2778294868409	92.337	0.45733	92.337	92.211	92.668	0					15	8	2	0	0	0	0.046478	1	33963	33963		82.529	0	1	1816400			41667	1846	30627	30872	40582	40582					-0.006446330504559228
QSPDFVRTV	9	Unmodified	_QSPDFVRTV_					0	0	0		nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38	nc|ENSG00000145868|Q6PIJ6-2|FBXO38	nc|ENSG00000145868|Q6PIJ6-2|FBXO38	MULTI-MSMS	A375_MHC_IP_R1	1	525.17431640625	2	524.774731	1047.53491	-0.3957	-0.00020765	-0.081908	-4.2983E-05	-0.4776	-0.00025063	524.7746052642225	47.593	0.75655	47.593	47.315	48.071	0					31	14	3	0	0	0	0.0095341	1	16720	16720		96.936	35.334	1	12455000			41668	5588	30628	30873	40583	40583					0.013042684378433478
QSPDFVRTV	9	Unmodified	_QSPDFVRTV_					0	0	0		nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38	nc|ENSG00000145868|Q6PIJ6-2|FBXO38	nc|ENSG00000145868|Q6PIJ6-2|FBXO38	MULTI-MSMS	A375_MHC_IP_R2	2	525.1741333007812	2	524.774731	1047.53491	-0.32014	-0.000168	-0.38012	-0.00019948	-0.70027	-0.00036748	524.7745022894828	46.81	0.81502	47.572	47.258	48.073	0.76127					34	15	4	0	0	0	0.0090873	1	17511	17511		100.71	17.28	1	14883000			41669	5588	30628	30873	40584	40584					0.013042684378433478
QSPEERQV	8	Unmodified	_QSPEERQV_					0	0	0			REV__ENST00000519374.5_1_5:172461698-172461947:+|nuORF	REV__ENST00000519374.5_1_5:172461698-172461947:+|nuORF	MSMS	A375_MHC_IP_R2	2	486.655517578125	2	486.740888	971.467223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.268	1	47.033	46.533	47.533	0.76519								0	0	0	0.16876	1	17324	17324		23.148	1.4018	1		+		41670	25685	30629	30874	40585	40585					-0.019651814929488864
QSPGENSSFY	10	Unmodified	_QSPGENSSFY_					0	0	0			REV__ENST00000420737.1_1:146016970-146019748:+|nuORF	REV__ENST00000420737.1_1:146016970-146019748:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	558.6350708007812	2	558.235635	1114.45672	-0.52507	-0.00029311	-0.80951	-0.0004519	-1.3346	-0.00074501	558.2353097369321	73.693	0.70926	73.693	73.336	74.045	0					29	13	3	0	0	0	0.70925	1	26800	26800		8.1555	0.8663	1	3609600	+		41671	24572	30630	30875	40586	40586					-0.09593208938031239
QSPLHAKPY	9	Unmodified	_QSPLHAKPY_					0	0	0		ENSG00000168140|ENST00000304735|VASN	ENSG00000168140|ENST00000304735|VASN	ENSG00000168140|ENST00000304735|VASN	MULTI-MSMS	A375_MHC_IP_R2	2	522.8408203125	2	520.779816	1039.54508	-0.56529	-0.00029439	-0.13737	-7.1541E-05	-0.70267	-0.00036593	520.7797766047727	78.686	2.3837	79.431	79.033	81.416	0.74473					115	46	5	0	0	0	0.64808	1	29790	29790		11.64	3.047	1	329760000			41672	7270	30631	30876	40587	40587					0.026888761630971203
QSPPFLLNEM	10	Unmodified	_QSPPFLLNEM_					0	0	0		SPATA31A1|p.F447L|1|0.08|ENSG00000204849|chr9:39359104-39359104|T/C|missense_variant	SPATA31A1|p.F447L|1|0.08|ENSG00000204849|chr9:39359104-39359104|T/C|missense_variant	SPATA31A1|p.F447L|1|0.08|ENSG00000204849|chr9:39359104-39359104|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	393.29962158203125	3	392.530358	1174.56925	-0.48356	-0.00018981	0.30042	0.00011792	-0.18315	-7.1891E-05	392.86506266568347	34.309	0.56076	35.061	34.853	35.414	0.75225					14	10	2	0	0	0	0.79457	1	12324	12324		17.863	11.24	1	18740000			41673	29228	30632	30877	40588	40588					-0.011056514655592764
QSPSANVL	8	Unmodified	_QSPSANVL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;ENST00000471232.5_1_2:32750532-32815924:+|nuORF	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	A375_MHC_IP_R2	2	408.61627197265625	2	408.216517	814.418482	-0.57048	-0.00023288	0.47788	0.00019508	-0.092598	-3.78E-05	408.2166632736272	36.818	1.2217	37.589	37.308	38.53	0.7709					59	23	4	0	0	0	0.2241	1	13645	13645		65.235	7.7637	1	58383000			41674	3337	30633	30878	40589	40589					0.003849499379612098
QSQIPVIAVSV	11	Unmodified	_QSQIPVIAVSV_					0	0	0		nc|ENSG00000145242|P54756-3|EPHA5;nc|ENSG00000145242|P54756-2|EPHA5;ENSG00000145242|ENST00000613740|EPHA5;nc|ENSG00000145242|P54756|EPHA5	nc|ENSG00000145242|P54756-3|EPHA5	nc|ENSG00000145242|P54756-3|EPHA5	MULTI-MSMS	A375_MHC_IP_R1	1	380.9584045410156	3	380.892284	1139.65502	0.31565	0.00012023	1.3517	0.00051485	1.6673	0.00063508	380.89268823428773	59.152	0.50916	59.152	58.938	59.448	0					11	9	2	0	0	0	0.73502	1	21283	21283		4.1166	1.0444	1	1042800			41675	5545	30634	30879	40590	40590					0.09078256711586619
QSQIRPVLS	9	Unmodified	_QSQIRPVLS_					0	0	0			REV__ENST00000535466.5_1_12:6898715-6908178:+|nuORF	REV__ENST00000535466.5_1_12:6898715-6908178:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	514.697998046875	2	514.298373	1026.58219	-0.74078	-0.00038098	0.55308	0.00028445	-0.1877	-9.6533E-05	514.2984201909117	131.24	1.6158	131.24	130.72	132.33	0					76	31	5	0	0	0	0.69674	1	50575	50575		7.2892	0.56607	1	85287000	+		41676	25901	30635	30880	40591	40591					0.0699654770885445
QSQIRPVLS	9	Unmodified	_QSQIRPVLS_					0	0	0			REV__ENST00000535466.5_1_12:6898715-6908178:+|nuORF	REV__ENST00000535466.5_1_12:6898715-6908178:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	514.6980590820312	2	514.298373	1026.58219	-0.7515	-0.0003865	0.28729	0.00014775	-0.46422	-0.00023875	514.2983601608928	131.07	1.6259	131.29	130.91	132.53	0.2142					68	31	3	0	0	0	0.69674	1	51546	51546		7.2892	0.56607	1	96833000	+		41677	25901	30635	30880	40592	40592					0.0699654770885445
QSQIRPVLS	9	Unmodified	_QSQIRPVLS_					0	0	0			REV__ENST00000535466.5_1_12:6898715-6908178:+|nuORF	REV__ENST00000535466.5_1_12:6898715-6908178:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	514.298373	1026.58219	-0.74078	-0.00038098	0.55308	0.00028445	-0.1877	-9.6533E-05	514.2984201909117	131.24	1.6158	131.24	130.72	132.33	0	-0.025867	0.00014881	NaN	7.2892	76	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85287000	+		41678	25901	30635	30880							0.0699654770885445
QSQIRPVLS	9	Unmodified	_QSQIRPVLS_					0	0	0			REV__ENST00000535466.5_1_12:6898715-6908178:+|nuORF	REV__ENST00000535466.5_1_12:6898715-6908178:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	514.298373	1026.58219	-0.7515	-0.0003865	0.28729	0.00014775	-0.46422	-0.00023875	514.2983601608928	131.07	1.6259	131.29	130.91	132.53	0.2142	0.025867	-0.00012459	NaN	7.2892	68	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96833000	+		41679	25901	30635	30880							0.0699654770885445
QSQKLQIQF	9	Unmodified	_QSQKLQIQF_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-SECPEP	A375_MHC_IP_R2	2	560.6578369140625	2	560.31148	1118.60841	-0.94986	-0.00053222	0.093657	5.2477E-05	-0.8562	-0.00047974	560.3115517125964	61.732	0.3533	62.475	62.32	62.674	0.74366					10	6	2	0	0	0	0.35487	1	23404	23404		29.082	9.8246	1	1262800			41680	4108	30636	30881	40593	40593					0.05384816880314247
QSQNQFLQKFD	11	Unmodified	_QSQNQFLQKFD_					0	0	0			REV__tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	REV__tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	461.3133544921875	3	461.561486	1381.66263	-0.23587	-0.00010887	2.6036	0.0012017	2.3677	0.0010929	461.8971312577099	74.494	0.50682	74.494	74.197	74.704	0					16	9	3	0	0	0	0.99332	1	27154	27154		7.846	2.4433	1	562390	+		41681	28383	30637	30882	40594	40594					-0.012936357587932434
QSQPDQLFF	9	Unmodified	_QSQPDQLFF_					0	0	0			REV__ENSG00000139641|ENST00000394048|ESYT1	REV__ENSG00000139641|ENST00000394048|ESYT1	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1483154296875	2	555.266739	1108.51892	-0.69261	-0.00038458	0.83435	0.00046329	0.14174	7.8702E-05	555.2662645871725	69.676	0.45926	70.41	70.183	70.642	0.73421					13	8	2	0	0	0	0.50702	1	26442	26442		25.399	0	1	871080	+		41682	19171	30638	30883	40595	40595					-0.030994377990509747
QSQQPVLWG	9	Unmodified	_QSQQPVLWG_					0	0	0			REV__TCF7L2|p.G265S|1|0.14|ENSG00000148737|chr10:113146015-113146015|G/A|missense_variant	REV__TCF7L2|p.G265S|1|0.14|ENSG00000148737|chr10:113146015-113146015|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	521.65673828125	2	521.769448	1041.52434	-0.5592	-0.00029177	-0.089858	-4.6885E-05	-0.64906	-0.00033866	521.7694150198085	76.294	0.60598	76.294	75.966	76.572	0					17	11	2	0	0	0	0.44024	1	27749	27749		22.736	8.8302	1	4995800	+		41683	28086	30639	30884	40596	40596					0.005242857833991366
QSQRRWRY	8	Unmodified	_QSQRRWRY_					0	0	0			REV__ENSG00000133980|ENST00000256362|VRTN	REV__ENSG00000133980|ENST00000256362|VRTN	MULTI-SECPEP	A375_MHC_IP_R1	1	393.614501953125	3	393.875851	1178.60572	0.029837	1.1752E-05	-2.2501	-0.00088626	-2.2203	-0.00087451	393.87529139390756	34.751	0.76011	34.751	34.253	35.013	0					17	14	2	0	0	0	0.94587	1	11500	11500		6.2058	1.3088	1	4375900	+		41684	18744	30640	30885	40597	40597					0.023564062660170748
QSRAAPVR	8	Unmodified	_QSRAAPVR_					0	0	0			REV__ENSG00000064687|ENST00000263094|ABCA7	REV__ENSG00000064687|ENST00000263094|ABCA7	MULTI-SECPEP	A375_MHC_IP_R1	1	443.15655517578125	2	442.756675	883.498798	0.10537	4.6655E-05	-0.11185	-4.9522E-05	-0.006476	-2.8673E-06	442.7565245423838	111.18	1.1741	111.18	111	112.18	0					42	22	2	0	0	0	0.972	1	41007	41007		2.0598	1.3694	1	3980200	+		41685	16482	30641	30886	40598	40598					0.05238856051653329
QSRDPHRY	8	Unmodified	_QSRDPHRY_					0	0	0			REV__ENSG00000213676|ENST00000375203|ATF6B	REV__ENSG00000213676|ENST00000375203|ATF6B	MULTI-SECPEP	A375_MHC_IP_R1	1	530.159423828125	2	529.759946	1057.50534	-0.52398	-0.00027758	0.057069	3.0233E-05	-0.46691	-0.00024735	529.7599478107859	81.615	0.70767	81.615	81.303	82.011	0					21	13	2	0	0	0	0.81376	1	29798	29798		19.257	19.257	1	4855800	+		41686	22628	30642	30887	40599	40599					-0.02111250787629615
QSRDPHRY	8	Unmodified	_QSRDPHRY_					0	0	0			REV__ENSG00000213676|ENST00000375203|ATF6B	REV__ENSG00000213676|ENST00000375203|ATF6B	MULTI-MATCH	A375_MHC_IP_R2	2		2	529.759946	1057.50534	-0.67208	-0.00035604	-0.3549	-0.00018801	-1.027	-0.00054405	529.7598307790079	80.906	0.56366	81.65	81.315	81.879	0.74473	0.017497	-0.00022241	NaN	19.257	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5036300	+		41687	22628	30642	30887							-0.02111250787629615
QSREDYIYGF	10	Unmodified	_QSREDYIYGF_					0	0	0		nc|ENSG00000156219|Q13508-2|ART3;ENST00000513494.5_1_4:76997042-77020397:+|nuORF;nc|ENSG00000156219|Q13508-3|ART3;ENSG00000156219|ENST00000355810|ART3;chr4:76058070-76058592|189|16.43|0.62|4.73|+|ENST00000513122|ART3,ART3	nc|ENSG00000156219|Q13508-2|ART3	nc|ENSG00000156219|Q13508-2|ART3	MULTI-SECPEP	A375_MHC_IP_R1	1	639.692626953125	2	639.293485	1276.57242	-0.62786	-0.00040138	-0.1858	-0.00011878	-0.81366	-0.00052017	639.2934107802811	73.158	0.70885	73.158	72.779	73.488	0					35	13	4	0	0	0	0.17675	1	26611	26611		72.968	40.182	1	10315000			41688	6182	30643	30888	40600	40600					-0.05480685087218262
QSREDYIYGF	10	Unmodified	_QSREDYIYGF_					0	0	0		nc|ENSG00000156219|Q13508-2|ART3;ENST00000513494.5_1_4:76997042-77020397:+|nuORF;nc|ENSG00000156219|Q13508-3|ART3;ENSG00000156219|ENST00000355810|ART3;chr4:76058070-76058592|189|16.43|0.62|4.73|+|ENST00000513122|ART3,ART3	nc|ENSG00000156219|Q13508-2|ART3	nc|ENSG00000156219|Q13508-2|ART3	MULTI-SECPEP	A375_MHC_IP_R2	2	639.6934204101562	2	639.293485	1276.57242	-0.88408	-0.00056519	-0.4821	-0.00030821	-1.3662	-0.00087339	639.2933124630272	72.556	0.86069	73.291	72.721	73.581	0.7354					42	16	4	0	0	0	0.060993	1	27489	27489		92.653	52.704	1	9323400			41689	6182	30643	30888	40601	40601					-0.05480685087218262
QSREGQHARL	10	Unmodified	_QSREGQHARL_					0	0	0			REV__ENST00000562222.5_1_16:30087691-30087790:+|nuORF	REV__ENST00000562222.5_1_16:30087691-30087790:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	394.2833251953125	3	394.542649	1180.60612	-0.073016	-2.8808E-05	2.4662	0.00097302	2.3932	0.00094421	394.5434634759459	42.927	0.45417	43.699	43.472	43.926	0.7724					12	8	2	0	0	0	0.93232	1	15995	15995		7.4771	2.1802	1	1031400	+		41690	26184	30644	30889	40602	40602					0.023037811952235643
QSRLVFHK	8	Unmodified	_QSRLVFHK_					0	0	0		HELZ2|p.E741K|1|0.19|ENSG00000130589|chr20:63567137-63567137|C/T|missense_variant	HELZ2|p.E741K|1|0.19|ENSG00000130589|chr20:63567137-63567137|C/T|missense_variant	HELZ2|p.E741K|1|0.19|ENSG00000130589|chr20:63567137-63567137|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	507.66131591796875	2	507.795801	1013.57705	-0.93658	-0.00047559	0.5605	0.00028462	-0.37608	-0.00019097	508.2976013660415	34.737	0.40468	35.501	35.273	35.677	0.76338					17	7	3	0	0	0	0.95423	1	12559	12559		12.532	3.1841	1	4685800			41691	14105	30645	30890	40603	40603					0.07080288636893783
QSRPIVKRA	9	Unmodified	_QSRPIVKRA_					0	0	0			REV__ENTPD1|p.E114K|1|0.47|ENSG00000138185|chr10:95842421-95842421|G/A|missense_variant	REV__ENTPD1|p.E114K|1|0.47|ENSG00000138185|chr10:95842421-95842421|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	352.6207580566406	3	352.220847	1053.64071	-0.075687	-2.6658E-05	-0.068157	-2.4006E-05	-0.14384	-5.0665E-05	352.22084430430033	31.489	0.50721	31.489	31.262	31.769	0					11	9	2	0	0	0	0.75519	1	10125	10125		14.405	8.6219	1	1414200	+		41692	26577	30646	30891	40604	40604					0.11603649074004352
QSRPIVKRA	9	Unmodified	_QSRPIVKRA_					0	0	0			REV__ENTPD1|p.E114K|1|0.47|ENSG00000138185|chr10:95842421-95842421|G/A|missense_variant	REV__ENTPD1|p.E114K|1|0.47|ENSG00000138185|chr10:95842421-95842421|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	352.932861328125	3	352.220847	1053.64071	-0.25063	-8.8278E-05	-0.25945	-9.1383E-05	-0.51008	-0.00017966	352.5551069132001	30.697	0.30097	31.415	31.216	31.517	0.71857					9	5	2	0	0	0	0.75519	1	10836	10836		10.151	1.4052	1	1528000	+		41693	26577	30646	30891	40605	40605					0.11603649074004352
QSRQWRRRFLF	11	Unmodified	_QSRQWRRRFLF_					0	0	0			REV__SPEG|p.S1873F|1|0.13|ENSG00000072195|chr2:219482836-219482836|C/T|missense_variant	REV__SPEG|p.S1873F|1|0.13|ENSG00000072195|chr2:219482836-219482836|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	789.8116455078125	2	790.439475	1578.8644	-0.4066	-0.00032139	-1.5457	-0.0012218	-1.9523	-0.0015432	790.4378131486674	100.67	0.3042	100.67	100.53	100.84	0					8	5	2	0	0	0	1.001	1	36999	36999		0	0	1	2010500	+		41694	28030	30647	30892	40606	40606					0.09811937508106894
QSRRCWRRMLH	11	Unmodified	_QSRRCWRRMLH_					0	0	0		ENST00000328945.6_1_16:82033365-82033524:-|nuORF	ENST00000328945.6_1_16:82033365-82033524:-|nuORF	ENST00000328945.6_1_16:82033365-82033524:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	764.7678833007812	2	764.896063	1527.77757	-0.97567	-0.00074629	0.59187	0.00045272	-0.3838	-0.00029357	764.896365873621	74.715	0.80991	75.452	75.163	75.973	0.73752					39	15	4	0	0	0	1.001	1	28544	28544		0.26902	0.26902	1	6314900			41695	10755	30648	30893	40607	40607					0.034794916903820194
QSRSDLHMTV	10	Unmodified	_QSRSDLHMTV_					0	0	0			REV__ENST00000333677.6_1_5:149011902-149012052:+|nuORF	REV__ENST00000333677.6_1_5:149011902-149012052:+|nuORF	MSMS	A375_MHC_IP_R1	1	391.9363708496094	3	391.860878	1172.56081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.833	1	34.833	34.333	35.333	0								0	0	0	0.14555	1	11521	11521		17.863	0.81459	1		+		41696	23648	30649	30894	40608	40608					-0.018572053821799273
QSRTPKRKKMR	11	Unmodified	_QSRTPKRKKMR_					0	0	0		ENST00000300811.7_1_19:44112133-44118443:-|nuORF	ENST00000300811.7_1_19:44112133-44118443:-|nuORF	ENST00000300811.7_1_19:44112133-44118443:-|nuORF	MSMS	A375_MHC_IP_R1	1	472.6867980957031	3	472.617383	1414.83032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.11	1	136.11	135.61	136.61	0								0	0	0	0.16337	1	52439	52439		0.40827	0	1				41697	10537	30650	30895	40609	40609					0.13949773024842216
QSRTPKRKKMR	11	Unmodified	_QSRTPKRKKMR_					0	0	0		ENST00000300811.7_1_19:44112133-44118443:-|nuORF	ENST00000300811.7_1_19:44112133-44118443:-|nuORF	ENST00000300811.7_1_19:44112133-44118443:-|nuORF	MSMS	A375_MHC_IP_R2	2	472.68353271484375	3	472.617383	1414.83032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.62	1	138.7	138.2	139.2	0.083969								0	0	0	0.16337	1	54349	54349		1.2148	1.0555	1				41698	10537	30650	30895	40610	40610					0.13949773024842216
QSRTWRRRWWL	11	Unmodified	_QSRTWRRRWWL_					0	0	0			REV__ENST00000554052.2_2_14:35515721-35519263:+|nuORF	REV__ENST00000554052.2_2_14:35515721-35519263:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	544.6467895507812	3	544.299042	1629.8753	-1.3242	-0.00072076	0.49013	0.00026678	-0.83407	-0.00045398	544.2994595535374	52.847	0.50699	53.598	53.335	53.842	0.75105					25	9	4	0	0	0	0.73896	1	20012	20012		0.36667	0.28332	1	8847500	+		41699	23316	30651	30896	40611	40611					0.08555339882400403
QSRYSKRRIWR	11	Unmodified	_QSRYSKRRIWR_					0	0	0		nc|ENSG00000112365|O43167-2|ZBTB24;ENSG00000112365|ENST00000230122|ZBTB24	nc|ENSG00000112365|O43167-2|ZBTB24	nc|ENSG00000112365|O43167-2|ZBTB24	MULTI-SECPEP	A375_MHC_IP_R1	1	513.150390625	3	512.627047	1534.85931	-0.60232	-0.00030876	-0.24023	-0.00012315	-0.84254	-0.00043191	512.6269251220752	37.904	0.35718	37.904	37.658	38.016	0					11	6	2	0	0	0	1.0007	1	12857	12857		1.0136	0	1	1928000			41700	3081	30652	30897	40612	40612					0.11327633645510105
QSSFNSLQRVP	11	Unmodified	_QSSFNSLQRVP_					0	0	0		nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-4|ETS1	nc|ENSG00000134954|P14921|ETS1	nc|ENSG00000134954|P14921|ETS1	MSMS	A375_MHC_IP_R1	1	421.64801025390625	3	421.554443	1261.6415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.962	1	35.962	35.462	36.462	0								0	0	0	0.16124	1	12000	12000		12.228	1.1623	1				41701	14614	30653	30898	40613	40613					0.02114398932349104
QSSFPSKW	8	Unmodified	_QSSFPSKW_					0	0	0			REV__ZYX|p.S204F|1|0.54|ENSG00000159840|chr7:143382910-143382910|C/T|missense_variant	REV__ZYX|p.S204F|1|0.54|ENSG00000159840|chr7:143382910-143382910|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	483.6377258300781	2	483.737617	965.460681	0.014492	7.0105E-06	0.49201	0.000238	0.5065	0.00024501	483.7391761300763	38.948	0.6605	38.948	38.628	39.289	0					17	12	2	0	0	0	0.73946	1	13175	13175		23.148	1.4018	1	2036900	+		41702	29062	30654	30899	40614	40614					-0.023430746536746483
QSSLPLYNFF	10	Unmodified	_QSSLPLYNFF_					0	0	0			REV__nc|ENSG00000114054|P05166-2|PCCB	REV__nc|ENSG00000114054|P05166-2|PCCB	MULTI-MSMS	A375_MHC_IP_R2	2	608.705810546875	2	608.305864	1214.59717	-0.40674	-0.00024742	3.7841	0.0023019	3.3774	0.0020545	608.3057815320274	62.953	0.40351	63.696	63.484	63.888	0.74263					23	7	4	0	0	0	0.42311	1	23872	23872		32.786	5.1569	1	3467000	+		41703	27182	30655	30900	40615	40615					-0.0015400521383526211
QSSQDEPIALD	11	Unmodified	_QSSQDEPIALD_					0	0	0		nc|ENSG00000197183|Q96MY1-2|NOL4L;nc|ENSG00000197183|Q96MY1|NOL4L;ENSG00000197183|ENST00000621426|NOL4L	nc|ENSG00000197183|Q96MY1-2|NOL4L	nc|ENSG00000197183|Q96MY1-2|NOL4L	MSMS	A375_MHC_IP_R2	2	601.6959228515625	2	601.780407	1201.54626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.298	1	65.038	64.538	65.538	0.74022								0	0	0	0.14479	1	24379	24379		23.79	2.2528	1				41704	9128	30656	30901	40616	40616					-0.04644999049355647
QSSSWTRVF	9	Unmodified	_QSSSWTRVF_					0	0	0		ENSG00000002330|ENST00000309032|BAD	ENSG00000002330|ENST00000309032|BAD	ENSG00000002330|ENST00000309032|BAD	MULTI-SECPEP	A375_MHC_IP_R1	1	549.67236328125	2	549.272355	1096.53016	-0.80812	-0.00044388	0.63236	0.00034734	-0.17575	-9.6536E-05	549.2725922476895	66.977	0.76746	66.977	66.58	67.348	0					42	14	4	0	0	0	0.048303	1	24212	24212		74.2	41.414	1	16165000			41705	853	30657	30902	40617	40617					-0.014246157049228714
QSSSWTRVF	9	Unmodified	_QSSSWTRVF_					0	0	0		ENSG00000002330|ENST00000309032|BAD	ENSG00000002330|ENST00000309032|BAD	ENSG00000002330|ENST00000309032|BAD	MULTI-SECPEP	A375_MHC_IP_R2	2	549.6714477539062	2	549.272355	1096.53016	-0.97097	-0.00053333	0.72431	0.00039784	-0.24666	-0.00013549	549.2725527228873	66.114	0.81717	66.852	66.475	67.292	0.73812					48	15	5	0	0	0	0.11849	1	25002	25002		70.332	44.933	1	14780000			41706	853	30657	30902	40618	40618					-0.014246157049228714
QSTHKWMV	8	Unmodified	_QSTHKWMV_					0	0	0		ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9802551269531	2	508.752744	1015.49094	-0.94812	-0.00048236	-3.8486	-0.001958	-4.7967	-0.0024403	508.7473577686882	34.784	0.71001	35.547	35.068	35.778	0.76338					32	13	3	0	0	0	0.8824	1	12621	12621		16.942	0	1	1362000			41707	6736	30658	30903	40619	40619					-0.016190392601288295
QSTHNEYY	8	Unmodified	_QSTHNEYY_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	A375_MHC_IP_R1	1	521.6166381835938	2	521.217246	1040.41994	-0.51269	-0.00026722	-0.74005	-0.00038573	-1.2527	-0.00065295	521.2168295302712	61.597	0.66387	61.597	61.279	61.943	0					24	12	3	0	0	0	0.77741	1	22206	22206		4.3292	0.38484	1	6215500	+		41708	17007	30659	30904	40620	40620					-0.09865460763944611
QSTHNEYY	8	Unmodified	_QSTHNEYY_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	A375_MHC_IP_R2	2	521.6163940429688	2	521.217246	1040.41994	-0.92225	-0.00048069	-0.5428	-0.00028292	-1.465	-0.00076361	521.2168075765501	61.022	0.6063	61.767	61.414	62.02	0.74503					25	11	3	0	0	0	0.77643	1	23087	23087		7.9102	2.1783	1	5534800	+		41709	17007	30659	30904	40621	40621					-0.09865460763944611
QSTHNEYY	8	Unmodified	_QSTHNEYY_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	A375_MHC_IP_R2	2	521.6163940429688	2	521.217246	1040.41994	-0.92225	-0.00048069	-0.5428	-0.00028292	-1.465	-0.00076361	521.2168075765501	61.022	0.6063	61.767	61.414	62.02	0.74503					25	11	3	0	0	0	0.972	1	23087	23087		7.9102	7.9102	1	5534800	+		41710	17007	30659	30904	40622	40622					-0.09865460763944611
QSTPIQHSF	9	Unmodified	_QSTPIQHSF_					0	0	0		ENSG00000024862|ENST00000617445|CCDC28A;nc|ENSG00000024862|Q8IWP9|CCDC28A	ENSG00000024862|ENST00000617445|CCDC28A	ENSG00000024862|ENST00000617445|CCDC28A	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1585693359375	2	522.759081	1043.50361	-1.0552	-0.00055163	0.10511	5.4945E-05	-0.95012	-0.00049668	522.759169543082	33.571	0.25362	34.323	34.196	34.45	0.75225					7	4	2	0	0	0	0.74875	1	12070	12070		10.8	0	1	3054800			41711	1084	30660	30905	40623	40623					-0.016403045962533724
QSTTYTSQN	9	Unmodified	_QSTTYTSQN_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-SECPEP	A375_MHC_IP_R1	1	515.64453125	2	515.22781	1028.44107	-0.41546	-0.00021406	-0.6833	-0.00035206	-1.0988	-0.00056611	515.2274452527206	34.938	1.2744	34.938	34.708	35.982	0					33	24	2	0	0	0	0.65623	1	11707	11707		23.79	0	1	3359200			41712	5409	30661	30906	40624	40624					-0.07201495455069562
QSTTYTSQN	9	Unmodified	_QSTTYTSQN_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MSMS	A375_MHC_IP_R2	2	515.6442260742188	2	515.22781	1028.44107	-1.0301	-0.00053071	-0.43605	-0.00022466	-1.4661	-0.00075538	515.227597090041	34.175	1.1662	34.927	34.803	35.969	0.75225					36	22	2	0	0	0	0.32889	1	12468	12468		28.495	6.9044	1	5138500			41713	5409	30661	30906	40625	40625					-0.07201495455069562
QSVEDFVPD	9	Unmodified	_QSVEDFVPD_					0	0	0		ENSG00000196642|ENST00000311502|RABL6;nc|ENSG00000196642|Q3YEC7-2|RABL6	ENSG00000196642|ENST00000311502|RABL6	ENSG00000196642|ENST00000311502|RABL6	MULTI-MSMS	A375_MHC_IP_R2	2	518.1846923828125	2	518.235104	1034.45566	-0.91526	-0.00047432	2.1619	0.0011204	1.2466	0.00064605	518.7376786531222	35.646	0.20342	36.409	36.283	36.486	0.76338					5	3	2	0	0	0	0.65721	1	12946	12946		10.824	2.9138	1	645570			41714	9067	30662	30907	40626	40626					-0.06019423306929639
QSVEPLTGW	9	Unmodified	_QSVEPLTGW_					0	0	0		ENSG00000125827|ENST00000246024|TMX4	ENSG00000125827|ENST00000246024|TMX4	ENSG00000125827|ENST00000246024|TMX4	MULTI-MSMS	A375_MHC_IP_R1	1	509.15582275390625	2	508.756007	1015.49746	-0.46094	-0.00023451	-0.21415	-0.00010895	-0.67509	-0.00034346	508.75585876821646	94.146	0.656	94.146	93.635	94.291	0					18	12	2	0	0	0	0.012843	1	34623	34623		92.653	40.385	1	1655900			41715	3997	30663	30908	40627	40627					-0.009668228277632807
QSVEPLTGW	9	Unmodified	_QSVEPLTGW_					0	0	0		ENSG00000125827|ENST00000246024|TMX4	ENSG00000125827|ENST00000246024|TMX4	ENSG00000125827|ENST00000246024|TMX4	MULTI-MSMS	A375_MHC_IP_R2	2	509.15618896484375	2	508.756007	1015.49746	-0.62915	-0.00032008	0.78457	0.00039915	0.15542	7.9071E-05	508.75628121908744	93.34	0.55968	94.079	93.797	94.356	0.73902					16	10	2	0	0	0	0.02114	1	35522	35522		82.529	27.756	1	1765500			41716	3997	30663	30908	40628	40628					-0.009668228277632807
QSVEVIESF	9	Unmodified	_QSVEVIESF_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.660400390625	2	519.261122	1036.50769	-1.0031	-0.00052086	-0.54113	-0.00028099	-1.5442	-0.00080185	519.2605654063861	34.248	0.81332	35	34.651	35.464	0.75225					33	15	3	0	0	0	0.24324	1	12407	12407		38.176	7.539	1	6056900			41717	1791	30664	30909	40629	40629					-0.00910259893203147
QSVFAGPL	8	Unmodified	_QSVFAGPL_					0	0	0			REV__L1PB1_dup12829|chr21:46585548-46587567:+|1.182533549073013|0.3950341382787979|1.58|465.0|127|3|anti-sense	REV__L1PB1_dup12829|chr21:46585548-46587567:+|1.182533549073013|0.3950341382787979|1.58|465.0|127|3|anti-sense	MSMS	A375_MHC_IP_R2	2	409.60235595703125	2	409.723978	817.433404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.727	1	68.463	67.963	68.963	0.73631								0	0	0	0.16876	1	25665	25665		24.674	0	1		+		41718	26899	30665	30910	40630	40630					0.017384418059464224
QSVHFQTIF	9	Unmodified	_QSVHFQTIF_					0	0	0		ENSG00000113643|ENST00000231572|RARS1;nc|ENSG00000113643|P54136-2|RARS1	ENSG00000113643|ENST00000231572|RARS1	ENSG00000113643|ENST00000231572|RARS1	MULTI-MSMS	A375_MHC_IP_R1	1	553.69775390625	2	553.785099	1105.55564	-0.4883	-0.00027041	-0.14642	-8.1086E-05	-0.63472	-0.0003515	553.7850312990046	81.732	0.55739	81.732	81.404	81.961	0					17	10	2	0	0	0	0.094655	1	29878	29878		51.63	11.672	1	3127700			41719	3170	30666	30911	40631	40631					0.007088588175065524
QSVHFQTIF	9	Unmodified	_QSVHFQTIF_					0	0	0		ENSG00000113643|ENST00000231572|RARS1;nc|ENSG00000113643|P54136-2|RARS1	ENSG00000113643|ENST00000231572|RARS1	ENSG00000113643|ENST00000231572|RARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	554.1840209960938	2	553.785099	1105.55564	-0.86156	-0.00047712	-0.51087	-0.00028291	-1.3724	-0.00076003	553.7847827242108	80.914	0.46224	81.659	81.365	81.828	0.74474					13	8	2	0	0	0	0.11711	1	30707	30707		69.105	29.148	1	2809700			41720	3170	30666	30911	40632	40632					0.007088588175065524
QSVILLDSI	9	Unmodified	_QSVILLDSI_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1;KNTC1|p.Y1229Cfs*17|1|0.23|ENSG00000184445|chr12:122586712-122586733|TATCCCTTGGAGTCTACCAGTT/-|frameshift_variant	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-SECPEP	A375_MHC_IP_R1	1	494.17889404296875	2	494.289682	986.564812	-0.64927	-0.00032093	0.25789	0.00012747	-0.39138	-0.00019346	494.2898083973187	67.147	0.51229	67.147	66.836	67.348	0					14	9	2	0	0	0	0.24324	1	24381	24381		45.7	3.86	1	1075100			41721	8585	30667	30912	40633	40633					0.07099207383191697
QSWRPDQEAW	10	Unmodified	_QSWRPDQEAW_					0	0	0		ENST00000534191.1_1_11:828562-829184:+|nuORF;ENST00000530737.2_1_11:828562-829423:+|nuORF	ENST00000534191.1_1_11:828562-829184:+|nuORF	ENST00000534191.1_1_11:828562-829184:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	435.28228759765625	3	434.866909	1301.5789	0.0026503	1.1525E-06	-0.14074	-6.1203E-05	-0.13809	-6.0051E-05	434.8668552888173	43.263	0.50948	43.263	42.993	43.502	0					22	9	3	0	0	0	0.71693	1	15088	15088		4.7159	2.2811	1	5266700			41722	13155	30668	30913	40634	40634					-0.059827471357948525
QSWRRFYHRLS	11	Unmodified	_QSWRRFYHRLS_					0	0	0		ENSG00000155760|ENST00000286201|FZD7	ENSG00000155760|ENST00000286201|FZD7	ENSG00000155760|ENST00000286201|FZD7	MSMS	A375_MHC_IP_R2	2	512.6452026367188	3	512.604131	1534.79056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.729	1	75.467	74.967	75.967	0.73752								0	0	0	0.1632	1	28364	28364		2.084	0.75432	1				41723	6154	30669	30914	40635	40635					0.04455969345804078
QSWTSVLEA	9	Unmodified	_QSWTSVLEA_					0	0	0		ENSG00000119720|ENST00000354366|NRDE2;ENST00000555903.1_1_14:90745249-90755225:-|nuORF	ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	MULTI-MSMS	A375_MHC_IP_R1	1	511.70306396484375	2	510.753464	1019.49238	-0.46427	-0.00023713	0.78979	0.00040339	0.32552	0.00016626	510.7536181471066	31.349	0.81056	31.349	30.959	31.769	0					41	15	4	0	0	0	0.6656	1	10004	10004		10.074	0	1	7338000			41724	3616	30670	30915	40636	40636					-0.016591266903787982
QSYWRHRELIM	11	Unmodified	_QSYWRHRELIM_					0	0	0		nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3	nc|ENSG00000170004|Q12873-3|CHD3	nc|ENSG00000170004|Q12873-3|CHD3	MSMS	A375_MHC_IP_R1	1	506.99041748046875	3	506.925994	1517.75615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.342	1	35.342	34.842	35.842	0								0	0	0	0.16312	1	11750	11750		1.0136	0	1				41725	14761	30671	30916	40637	40637					0.017983851426606634
QTAFPVRW	8	Unmodified	_QTAFPVRW_					0	0	0		ENST00000432460.1_3_2:219523811-219524039:-|nuORF;ENST00000450765.5_1_2:219523811-219524298:-|nuORF	ENST00000432460.1_3_2:219523811-219524039:-|nuORF	ENST00000432460.1_3_2:219523811-219524039:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	503.1688232421875	2	502.769252	1003.52395	-0.38344	-0.00019278	-0.23367	-0.00011748	-0.61711	-0.00031026	502.7693475868815	77.411	0.50488	77.411	77.083	77.588	0					19	9	3	0	0	0	0.86263	1	28242	28242		34.102	1.797	1	3595700			41726	11877	30672	30917	40638	40638					0.022329108542294307
QTAFPVRW	8	Unmodified	_QTAFPVRW_					0	0	0		ENST00000432460.1_3_2:219523811-219524039:-|nuORF;ENST00000450765.5_1_2:219523811-219524298:-|nuORF	ENST00000432460.1_3_2:219523811-219524039:-|nuORF	ENST00000432460.1_3_2:219523811-219524039:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1690979003906	2	502.769252	1003.52395	-0.6347	-0.00031911	-0.23818	-0.00011975	-0.87287	-0.00043885	502.76937917338046	76.565	0.75991	77.306	77.045	77.805	0.74052					27	14	3	0	0	0	0.26691	1	29063	29063		49.933	28.396	1	3149400			41727	11877	30672	30917	40639	40639					0.022329108542294307
QTAMDEAFT	9	Unmodified	_QTAMDEAFT_					0	0	0		nc|ENSG00000132031|O15232-2|MATN3;ENSG00000132031|ENST00000407540|MATN3	nc|ENSG00000132031|O15232-2|MATN3	nc|ENSG00000132031|O15232-2|MATN3	MULTI-SECPEP	A375_MHC_IP_R1	1	506.8879699707031	2	507.215857	1012.41716	-0.38898	-0.0001973	1.7634	0.00089444	1.3744	0.00069714	507.2160469760698	87.773	0.25353	87.773	87.696	87.949	0					6	4	2	0	0	0	0.76827	1	32205	32205		0.35063	0	1	1028500			41728	4371	30673	30918	40640	40640					-0.08855052213107228
QTASDQRYV	9	Unmodified	_QTASDQRYV_					0	0	0			REV__JMJD1C|p.F206L|1|0.32|ENSG00000171988|chr10:63217267-63217267|A/T|missense_variant	REV__JMJD1C|p.F206L|1|0.32|ENSG00000171988|chr10:63217267-63217267|A/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	534.6849975585938	2	534.259445	1066.50434	-0.6885	-0.00036784	-0.4088	-0.00021841	-1.0973	-0.00058624	534.2589298487762	28.364	0.3029	28.364	28.188	28.491	0					8	5	2	0	0	0	0.6324	1	8679	8679		13.042	0.80181	1	1378900	+		41729	21114	30674	30919	40641	40641					-0.026255099471882204
QTATIAKTF	9	Unmodified	_QTATIAKTF_					0	0	0		ENST00000527401.5_1_11:45957138-45987102:-|nuORF;nc|ENSG00000135365|Q96BD5-2|PHF21A;nc|ENSG00000135365|Q96BD5|PHF21A;ENSG00000135365|ENST00000676320|PHF21A	ENST00000527401.5_1_11:45957138-45987102:-|nuORF	ENST00000527401.5_1_11:45957138-45987102:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	491.17388916015625	2	490.7742	979.533846	-0.58974	-0.00028943	-0.086424	-4.2414E-05	-0.67616	-0.00033184	490.77429496562524	38.028	0.66296	38.028	37.812	38.475	0					23	12	3	0	0	0	0.05217	1	12861	12861		89.401	47.561	1	8862800			41730	4675	30675	30920	40642	40642					0.04326054068951635
QTATIAKTF	9	Unmodified	_QTATIAKTF_					0	0	0		ENST00000527401.5_1_11:45957138-45987102:-|nuORF;nc|ENSG00000135365|Q96BD5-2|PHF21A;nc|ENSG00000135365|Q96BD5|PHF21A;ENSG00000135365|ENST00000676320|PHF21A	ENST00000527401.5_1_11:45957138-45987102:-|nuORF	ENST00000527401.5_1_11:45957138-45987102:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	491.1737976074219	2	490.7742	979.533846	-1.1144	-0.00054693	0.22192	0.00010891	-0.89249	-0.00043801	490.77436340302256	37.175	0.60979	37.946	37.665	38.275	0.7709					26	11	3	0	0	0	0.011031	1	13589	13589		107.1	53.267	1	9635300			41731	4675	30675	30920	40643	40643					0.04326054068951635
QTATTTMVY	9	Oxidation (M)	_QTATTTM(Oxidation (M))VY_		QTATTTM(1)VY		QTATTTM(42)VY	0	0	1		ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MULTI-MSMS	A375_MHC_IP_R1	1	516.6392822265625	2	516.239332	1030.46411	-0.59316	-0.00030621	0.17795	9.1864E-05	-0.41521	-0.00021435	516.2394657636639	34.278	0.70741	34.278	33.95	34.657	0					28	13	3	0	0	0	0.14922	1	11268	11268		41.84	20.968	1	11796000			41732	9244	30676	30921	40644	40644		420			-0.0499019266196683
QTATTTMVY	9	Oxidation (M)	_QTATTTM(Oxidation (M))VY_					0	0	1		ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	516.239332	1030.46411	-0.59316	-0.00030621	0.17795	9.1864E-05	-0.41521	-0.00021435	516.2394657636639	34.278	0.70741	34.278	33.95	34.657	0	-0.069063	-0.00010588	NaN	41.84	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11796000			41733	9244	30676	30921				420			-0.0499019266196683
QTDCAPNNGY	10	Unmodified	_QTDCAPNNGY_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;NOMO1|p.Q465Kfs*4|1|0.07|ENSG00000103512|chr16:14863184-14863185|-/AAGAC|frameshift_variant	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-SECPEP	A375_MHC_IP_R1	1	542.1138916015625	2	541.714013	1081.41347	-0.81597	-0.00044202	0.30021	0.00016263	-0.51575	-0.00027939	541.7141050383883	27.912	0.55366	27.912	27.735	28.288	0					18	10	2	0	0	0	0.22217	1	8571	8571		47.749	47.749	1	3253600			41734	2432	30677	30922	40645	40645					-0.12397721986985744
QTDCAPNNGY	10	Unmodified	_QTDCAPNNGY_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;NOMO1|p.Q465Kfs*4|1|0.07|ENSG00000103512|chr16:14863184-14863185|-/AAGAC|frameshift_variant	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-SECPEP	A375_MHC_IP_R2	2	542.1138305664062	2	541.714013	1081.41347	-0.76589	-0.00041489	0.32789	0.00017762	-0.43799	-0.00023727	541.7141447298491	27.394	0.45667	28.073	27.895	28.351	0.67857					15	8	2	0	0	0	0.37864	1	9395	9395		31.268	13.122	1	3348200			41735	2432	30677	30922	40646	40646					-0.12397721986985744
QTDDNMEICTP	11	Unmodified	_QTDDNMEICTP_					0	0	0		ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	MSMS	A375_MHC_IP_R1	1	633.688232421875	2	633.752478	1265.4904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.956	1	98.956	98.456	99.456	0								0	0	0	0.15971	1	36354	36354		14.405	4.3315	1				41736	3251	30678	30923	40647	40647					-0.13172291552814386
QTDDTWRTEY	10	Unmodified	_QTDDTWRTEY_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-MSMS	A375_MHC_IP_R2	2	658.1828002929688	2	657.783481	1313.55241	-0.84747	-0.00055745	-0.2922	-0.0001922	-1.1397	-0.00074965	657.7834876175883	42.775	0.45587	43.548	43.268	43.724	0.7724					14	8	2	0	0	0	0.0036544	2	15929	15929;15951		96.936	70.667	1	3704400			41737	3732	30679	30924	40648;40649	40648					-0.09182480817798933
QTDFGMYDY	9	Oxidation (M)	_QTDFGM(Oxidation (M))YDY_		QTDFGM(1)YDY		QTDFGM(56)YDY	0	0	1		ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;ENST00000486209.5_1_22:21830876-21832684:-|nuORF;ENST00000492581.5_1_22:21065434-21067334:-|nuORF;ENST00000450651.5_1_22:21830386-21841179:-|nuORF;ENST00000463608.5_1_22:21830433-21838406:-|nuORF;ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;ENST00000466772.5_1_22:21065465-21081626:-|nuORF	ENST00000467443.5_1_22:21831964-21846319:-|nuORF;ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	A375_MHC_IP_R1	1	578.6187744140625	2	578.218597	1154.42264	-0.54715	-0.00031637	1.586	0.00091703	1.0388	0.00060066	578.2187830783338	67.64	0.76126	67.64	67.245	68.006	0					34	14	3	0	0	0	0.14606	1	24482	24482		55.503	11.644	1	3276000			41738	9791;12280	30680	30925	40650	40650		442			-0.14839373421295932
QTDFGMYDY	9	Oxidation (M)	_QTDFGM(Oxidation (M))YDY_		QTDFGM(1)YDY		QTDFGM(54)YDY	0	0	1		ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;ENST00000486209.5_1_22:21830876-21832684:-|nuORF;ENST00000492581.5_1_22:21065434-21067334:-|nuORF;ENST00000450651.5_1_22:21830386-21841179:-|nuORF;ENST00000463608.5_1_22:21830433-21838406:-|nuORF;ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;ENST00000466772.5_1_22:21065465-21081626:-|nuORF	ENST00000467443.5_1_22:21831964-21846319:-|nuORF;ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	A375_MHC_IP_R2	2	578.617919921875	2	578.218597	1154.42264	-0.2429	-0.00014045	-0.47695	-0.00027578	-0.71985	-0.00041623	578.2181899512859	67.158	0.65968	67.894	67.495	68.155	0.73631					23	12	2	0	0	0	0.10103	1	25400	25400		53.833	15.859	1	3852400			41739	9791;12280	30680	30925	40651	40651		442			-0.14839373421295932
QTDFGMYDY	9	Unmodified	_QTDFGMYDY_					0	0	0		ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;ENST00000486209.5_1_22:21830876-21832684:-|nuORF;ENST00000492581.5_1_22:21065434-21067334:-|nuORF;ENST00000450651.5_1_22:21830386-21841179:-|nuORF;ENST00000463608.5_1_22:21830433-21838406:-|nuORF;ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;ENST00000466772.5_1_22:21065465-21081626:-|nuORF	ENST00000467443.5_1_22:21831964-21846319:-|nuORF;ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	A375_MHC_IP_R2	2	570.6212158203125	2	570.221139	1138.42773	-0.17097	-9.7493E-05	-0.45786	-0.00026108	-0.62884	-0.00035858	570.2210275699201	86.568	0.61336	87.301	86.998	87.612	0.733					21	11	3	0	0	0	0.027818	1	32919	32919		76.825	30.804	1	2245900			41740	9791;12280	30680	30926	40652	40652					-0.13595069558664363
QTDFNDMEDDD	11	Unmodified	_QTDFNDMEDDD_					0	0	0		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5	nc|ENSG00000065150|O00410-2|IPO5	nc|ENSG00000065150|O00410-2|IPO5	MULTI-SECPEP	A375_MHC_IP_R2	2	672.2037963867188	2	672.730254	1343.44595	-1.0768	-0.00072437	-0.70344	-0.00047323	-1.7802	-0.0011976	672.7291658376205	57.447	0.15184	58.196	58.069	58.221	0.74894					4	2	2	0	0	0	0.99955	1	21685	21685		1.1933	0.84271	1	730270			41741	1370	30681	30927	40653	40653					-0.21203024165288298
QTDGCNGLRY	10	Carbamidomethyl (C)	_QTDGC(Carbamidomethyl (C))NGLRY_	QTDGC(1)NGLRY		QTDGC(160)NGLRY		0	1	0		nc|ENSG00000110768|P32780-2|GTF2H1;ENST00000418116.6_1_11:18344284-18382305:+|nuORF;ENSG00000110768|ENST00000265963|GTF2H1	nc|ENSG00000110768|P32780-2|GTF2H1	nc|ENSG00000110768|P32780-2|GTF2H1	MULTI-MSMS	A375_MHC_IP_R1	1	592.6620483398438	2	592.261662	1182.50877	-0.34058	-0.00020171	-0.37041	-0.00021938	-0.71099	-0.00042109	592.2615928408636	28.719	0.5054	28.719	28.491	28.996	0					24	9	4	0	0	0	2.6939E-05	1	8889	8889		157.8	112.1	1	10206000			41742	2947	30682	30928	40654	40654	20				-0.0751836879592247
QTDGCNGLRY	10	Carbamidomethyl (C)	_QTDGC(Carbamidomethyl (C))NGLRY_	QTDGC(1)NGLRY		QTDGC(160)NGLRY		0	1	0		nc|ENSG00000110768|P32780-2|GTF2H1;ENST00000418116.6_1_11:18344284-18382305:+|nuORF;ENSG00000110768|ENST00000265963|GTF2H1	nc|ENSG00000110768|P32780-2|GTF2H1	nc|ENSG00000110768|P32780-2|GTF2H1	MULTI-MSMS	A375_MHC_IP_R2	2	592.6617431640625	2	592.261662	1182.50877	-0.75128	-0.00044495	0.042487	2.5164E-05	-0.70879	-0.00041979	592.2617572126915	28.058	0.45692	28.737	28.553	29.01	0.67857					21	8	3	0	0	0	2.6939E-05	1	9658	9658		157.8	112.1	1	11097000			41743	2947	30682	30928	40655	40655	20				-0.0751836879592247
QTDGLKGFY	9	Unmodified	_QTDGLKGFY_					0	0	0		nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36;nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF	nc|ENSG00000114120|Q96CQ1-3|SLC25A36	nc|ENSG00000114120|Q96CQ1-3|SLC25A36	MULTI-MSMS	A375_MHC_IP_R1	1	515.1560668945312	2	514.756007	1027.49746	-0.46076	-0.00023718	0.31278	0.00016101	-0.14798	-7.6175E-05	514.7561487602685	53.663	0.50943	53.663	53.403	53.912	0					15	9	2	0	0	0	0.033557	2	19100	19100;19133		71.922	31.965	1	3926100			41744	3199	30683	30929	40656;40657	40656					-0.01518822827756594
QTDGLKGFY	9	Unmodified	_QTDGLKGFY_					0	0	0		nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36;nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF	nc|ENSG00000114120|Q96CQ1-3|SLC25A36	nc|ENSG00000114120|Q96CQ1-3|SLC25A36	MULTI-MSMS	A375_MHC_IP_R2	2	514.6761474609375	2	514.756007	1027.49746	-1.282	-0.00065993	0.63237	0.00032552	-0.64965	-0.00033441	514.7562333103035	52.853	0.5079	53.604	53.385	53.893	0.75105					15	9	2	0	0	0	0.040308	2	19941	19928;19941		68.081	42.681	1	4617600			41745	3199	30683	30929	40658;40659	40659					-0.01518822827756594
QTDHLFFKY	9	Unmodified	_QTDHLFFKY_					0	0	0		ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ADAM10|p.Y225F|1|0.45|ENSG00000137845|chr15:58646116-58646116|T/A|missense_variant	ENSG00000137845|ENST00000260408|ADAM10	ENSG00000137845|ENST00000260408|ADAM10	MULTI-MSMS	A375_MHC_IP_R1	1	400.6012878417969	3	400.201229	1197.58186	-0.2693	-0.00010777	0.57722	0.000231	0.30792	0.00012323	400.2014034234043	60.337	0.91645	60.337	60.006	60.922	0					52	17	5	0	0	0	0.038567	1	21686	21686		68.76	47.17	1	48797000			41746	4929	30684	30930	40660	40660					-0.00902872010988176
QTDHLFFKY	9	Unmodified	_QTDHLFFKY_					0	0	0		ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ADAM10|p.Y225F|1|0.45|ENSG00000137845|chr15:58646116-58646116|T/A|missense_variant	ENSG00000137845|ENST00000260408|ADAM10	ENSG00000137845|ENST00000260408|ADAM10	MULTI-SECPEP	A375_MHC_IP_R1	1	600.197998046875	2	599.798206	1197.58186	-0.38405	-0.00023035	0.13423	8.0509E-05	-0.24982	-0.00014984	599.7983094370082	60.345	0.56007	60.345	60.109	60.669	0					32	10	4	0	0	0	0.011308	1	21710	21710		128.93	83.233	1	9662400			41747	4929	30684	30930	40661	40661					-0.00902872010988176
QTDHLFFKY	9	Unmodified	_QTDHLFFKY_					0	0	0		ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ADAM10|p.Y225F|1|0.45|ENSG00000137845|chr15:58646116-58646116|T/A|missense_variant	ENSG00000137845|ENST00000260408|ADAM10	ENSG00000137845|ENST00000260408|ADAM10	MULTI-MSMS	A375_MHC_IP_R2	2	400.6009826660156	3	400.201229	1197.58186	-0.43475	-0.00017399	0.24504	9.8067E-05	-0.1897	-7.592E-05	400.20127796166884	59.476	0.8075	60.223	59.896	60.704	0.74714					50	15	5	0	0	0	0.085252	1	22460	22460		53.317	28.435	1	53758000			41748	4929	30684	30930	40662	40662					-0.00902872010988176
QTDHLFFKY	9	Unmodified	_QTDHLFFKY_					0	0	0		ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ADAM10|p.Y225F|1|0.45|ENSG00000137845|chr15:58646116-58646116|T/A|missense_variant	ENSG00000137845|ENST00000260408|ADAM10	ENSG00000137845|ENST00000260408|ADAM10	MULTI-MSMS	A375_MHC_IP_R2	2	600.1973266601562	2	599.798206	1197.58186	-0.912	-0.00054702	-0.068302	-4.0967E-05	-0.9803	-0.00058798	599.7981313466718	59.469	0.70731	60.216	59.896	60.603	0.74714					30	13	4	0	0	0	0.0065872	1	22493	22493		168.54	122.84	1	7987300			41749	4929	30684	30930	40663	40663					-0.00902872010988176
QTDINLPY	8	Unmodified	_QTDINLPY_					0	0	0		ENSG00000113013|ENST00000297185|HSPA9;ENST00000507097.5_1_5:137893182-137909502:-|nuORF;ENST00000432228.1_1_2:222826463-222827672:+|nuORF	ENSG00000113013|ENST00000297185|HSPA9	ENSG00000113013|ENST00000297185|HSPA9	MULTI-SECPEP	A375_MHC_IP_R1	1	482.642333984375	2	482.242732	962.470912	-0.3533	-0.00017038	-0.072274	-3.4853E-05	-0.42557	-0.00020523	482.24258353988694	81.434	0.70857	81.434	80.999	81.707	0					27	13	3	0	0	0	0.78043	1	29727	29727		40.449	8.1431	1	4168300			41750	3122	30685	30931	40664	40664					-0.011825117190937817
QTDINLPY	8	Unmodified	_QTDINLPY_					0	0	0		ENSG00000113013|ENST00000297185|HSPA9;ENST00000507097.5_1_5:137893182-137909502:-|nuORF;ENST00000432228.1_1_2:222826463-222827672:+|nuORF	ENSG00000113013|ENST00000297185|HSPA9	ENSG00000113013|ENST00000297185|HSPA9	MULTI-MSMS	A375_MHC_IP_R2	2	482.6422119140625	2	482.242732	962.470912	-0.64727	-0.00031214	-0.12062	-5.8169E-05	-0.76789	-0.00037031	482.24273041775837	80.713	0.61322	81.457	81.214	81.828	0.74474					25	11	3	0	0	0	0.037539	1	30647	30647		120.45	45.521	1	4960700			41751	3122	30685	30931	40665	40665					-0.011825117190937817
QTDIQGALSAY	11	Unmodified	_QTDIQGALSAY_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-SECPEP	A375_MHC_IP_R1	1	584.1878051757812	2	583.788035	1165.56152	-0.23792	-0.00013889	0.51335	0.00029969	0.27544	0.0001608	583.7882061053772	79.702	0.76971	79.702	79.367	80.136	0					27	14	2	0	0	0	0.015491	1	29040	29040		121.5	75.763	1	29072000			41752	9310	30686	30932	40666	40666					-0.014640874614769928
QTDIQGALSAY	11	Unmodified	_QTDIQGALSAY_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-SECPEP	A375_MHC_IP_R2	2	583.1666870117188	2	583.788035	1165.56152	-0.33367	-0.00019479	-0.019453	-1.1357E-05	-0.35312	-0.00020615	583.7879134814134	79.176	0.86116	79.921	79.489	80.35	0.74474					27	16	2	0	0	0	0.0009541	1	30074	30074		121.5	59.901	1	30273000			41753	9310	30686	30932	40667	40667					-0.014640874614769928
QTDKLKELY	9	Unmodified	_QTDKLKELY_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-MSMS	A375_MHC_IP_R1	1	380.27655029296875	3	379.876523	1136.60774	0.18991	7.2142E-05	-0.11074	-4.2068E-05	0.07917	3.0075E-05	379.87648902821405	32.964	1.2657	32.964	32.684	33.95	0					75	24	5	0	0	0	0.063448	2	10661	10655;10661		59.052	30.819	1	342410000			41754	7900	30687	30933	40668;40669	40669					0.04489977440630355
QTDKLKELY	9	Unmodified	_QTDKLKELY_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-MSMS	A375_MHC_IP_R1	1	569.7107543945312	2	569.311146	1136.60774	-0.47241	-0.00026895	-0.038064	-2.167E-05	-0.51048	-0.00029062	569.3110889755824	32.964	0.81281	32.964	32.734	33.547	0					42	15	5	0	0	0	0.0027482	2	10678	10678;10711		211.85	82.083	1	117970000			41755	7900	30687	30933	40670;40671	40670					0.04489977440630355
QTDKLKELY	9	Unmodified	_QTDKLKELY_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-MSMS	A375_MHC_IP_R2	2	380.2765197753906	3	379.876523	1136.60774	0.019671	7.4726E-06	0.0319	1.2118E-05	0.051571	1.9591E-05	379.87653267237243	32.198	1.5771	32.935	32.654	34.232	0.73692					75	30	5	0	0	0	0.11638	1	11389	11389		47.732	17.029	1	365850000			41756	7900	30687	30933	40672	40672					0.04489977440630355
QTDKLKELY	9	Unmodified	_QTDKLKELY_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-MSMS	A375_MHC_IP_R2	2	569.711181640625	2	569.311146	1136.60774	-0.34974	-0.00019911	-0.22705	-0.00012926	-0.57679	-0.00032837	569.3109757186943	32.196	0.66213	32.933	32.654	33.317	0.73692					40	12	5	0	0	0	0.0030971	2	11401	11401;11446		211.85	82.083	1	99899000			41757	7900	30687	30933	40673;40674	40673					0.04489977440630355
QTDLLAVEP	9	Unmodified	_QTDLLAVEP_					0	0	0			REV__nc|ENSG00000065150|O00410-2|IPO5	REV__nc|ENSG00000065150|O00410-2|IPO5	MSMS	A375_MHC_IP_R2	2	493.1839599609375	2	493.263665	984.512776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.07	1	103.83	103.33	104.33	0.76428								0	0	0	0.099728	1	39038	39038		42.095	3.9434	1		+		41758	16488	30688	30934	40675	40675					0.01990043969431099
QTDLVHQRY	9	Unmodified	_QTDLVHQRY_					0	0	0		tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	580.6045532226562	2	580.296362	1158.57817	-0.48105	-0.00027915	-3.7082	-0.0021519	-4.1893	-0.002431	580.2943789575262	25.991	0.55636	25.991	25.765	26.322	0					12	10	2	0	0	0	0.55359	1	7827	7827		21.747	0	1	2936100			41759	29622	30689	30935	40676	40676					0.005224582151413415
QTDNIIYVY	9	Unmodified	_QTDNIIYVY_					0	0	0		nc|ENSG00000138002|Q9UG01-3|IFT172;ENST00000511842.5_1_2:27693746-27712529:-|nuORF;ENST00000475476.2_1_2:27707060-27712589:-|nuORF;ENST00000476264.6_1_2:27703990-27712589:-|nuORF;ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172;ENST00000507184.5_1_2:27680991-27709067:-|nuORF	nc|ENSG00000138002|Q9UG01-3|IFT172;ENSG00000138002|ENST00000260570|IFT172	ENSG00000138002|ENST00000260570|IFT172	MULTI-MSMS	A375_MHC_IP_R2	2	565.1826171875	2	564.782222	1127.54989	-0.35813	-0.00020227	0.46823	0.00026445	0.1101	6.2181E-05	564.7823859115133	93.34	0.71137	94.079	93.746	94.458	0.73902					36	13	3	0	0	0	0.0092755	2	35437	35437;35575		126.57	37.612	1	10175000			41760	4942;14631	30690	30936	40677;40678	40677					-0.008782844847928573
QTDPANCDY	9	Unmodified	_QTDPANCDY_					0	0	0		ENSG00000104957|ENST00000221554|YJU2B	ENSG00000104957|ENST00000221554|YJU2B	ENSG00000104957|ENST00000221554|YJU2B	MULTI-MSMS	A375_MHC_IP_R1	1	514.0947875976562	2	513.695289	1025.37602	-0.52387	-0.00026911	-0.16742	-8.6001E-05	-0.69129	-0.00035511	513.6952189001807	34.067	0.91159	34.067	33.848	34.759	0					40	17	3	0	0	0	0.0018976	2	11175	11144;11175		145.13	92.861	1	12676000			41761	2557	30691	30937	40679;40680	40680					-0.13564813252605745
QTDPANCDY	9	Unmodified	_QTDPANCDY_					0	0	0		ENSG00000104957|ENST00000221554|YJU2B	ENSG00000104957|ENST00000221554|YJU2B	ENSG00000104957|ENST00000221554|YJU2B	MULTI-MSMS	A375_MHC_IP_R2	2	514.0948486328125	2	513.695289	1025.37602	-1.2164	-0.00062486	0.062318	3.2012E-05	-1.1541	-0.00059285	513.6953576620599	33.518	0.91185	34.271	33.891	34.803	0.75225					41	17	4	0	0	0	0.010055	2	11964	11964;11990		125.53	81.671	1	14549000			41762	2557	30691	30937	40681;40682	40681					-0.13564813252605745
QTDPATLLH	9	Unmodified	_QTDPATLLH_					0	0	0		ENST00000463077.5_1_3:149459310-149470177:-|nuORF;ENSG00000114744|ENST00000473414|COMMD2	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	498.6612243652344	2	498.261456	994.50836	-0.45188	-0.00022515	0.11751	5.855E-05	-0.33437	-0.0001666	498.2614972024996	47.138	0.81764	47.138	46.85	47.668	0					35	15	3	0	0	0	0.027983	1	16560	16560		92.491	48.633	1	6629900			41763	3242	30692	30938	40683	40683					0.01088579546535584
QTDPATLLH	9	Unmodified	_QTDPATLLH_					0	0	0		ENST00000463077.5_1_3:149459310-149470177:-|nuORF;ENSG00000114744|ENST00000473414|COMMD2	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	498.2419738769531	2	498.261456	994.50836	-0.3983	-0.00019846	0.015937	7.9408E-06	-0.38236	-0.00019052	498.26155942257645	46.482	0.86264	47.247	46.704	47.567	0.76519					37	16	3	0	0	0	0.0090669	1	17438	17438		100.37	56.513	1	6029900			41764	3242	30692	30938	40684	40684					0.01088579546535584
QTDPSGTYHAW	11	Unmodified	_QTDPSGTYHAW_					0	0	0		ENST00000484488.5_1_20:60711915-60714832:-|nuORF;nc|ENSG00000101182|O14818-2|PSMA7;nc|ENSG00000154611|Q8TAA3-2|PSMA8;ENSG00000101182|ENST00000370873|PSMA7;ENSG00000154611|ENST00000415576|PSMA8;nc|ENSG00000154611|Q8TAA3|PSMA8	ENST00000484488.5_1_20:60711915-60714832:-|nuORF	ENST00000484488.5_1_20:60711915-60714832:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	631.72265625	2	631.775459	1261.53637	-0.45766	-0.00028914	0.072222	4.5628E-05	-0.38544	-0.00024351	631.7754173485624	42.662	0.70737	42.662	42.336	43.043	0					40	13	4	0	0	0	5.6607E-17	1	14801	14801		199.75	144.25	1	13414000			41765	2263	30693	30939	40685	40685					-0.08394142264046422
QTDPSGTYHAW	11	Unmodified	_QTDPSGTYHAW_					0	0	0		ENST00000484488.5_1_20:60711915-60714832:-|nuORF;nc|ENSG00000101182|O14818-2|PSMA7;nc|ENSG00000154611|Q8TAA3-2|PSMA8;ENSG00000101182|ENST00000370873|PSMA7;ENSG00000154611|ENST00000415576|PSMA8;nc|ENSG00000154611|Q8TAA3|PSMA8	ENST00000484488.5_1_20:60711915-60714832:-|nuORF	ENST00000484488.5_1_20:60711915-60714832:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	631.9732666015625	2	631.775459	1261.53637	-0.7589	-0.00047945	0.24501	0.00015479	-0.51388	-0.00032466	631.7754818617394	41.983	0.81755	42.758	42.453	43.27	0.77451					48	15	5	0	0	0	4.6498E-17	1	15666	15666		201.57	161.62	1	15289000			41766	2263	30693	30939	40686	40686					-0.08394142264046422
QTDPTLLSV	9	Unmodified	_QTDPTLLSV_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-MSMS	A375_MHC_IP_R1	1	487.7132263183594	2	487.263665	972.512776	-0.25117	-0.00012239	-0.10717	-5.2218E-05	-0.35834	-0.0001746	487.26356235194686	87.918	0.866	87.918	87.441	88.307	0					49	16	4	0	0	0	0.0098183	2	32224	32224;32254		114.65	32.759	1	26114000			41767	5524	30694	30940	40687;40688	40687					0.02542043969435781
QTDPTLLSV	9	Unmodified	_QTDPTLLSV_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-SECPEP	A375_MHC_IP_R1	1	973.1591796875	1	973.520053	972.512776	0.13915	0.00013547	-0.29619	-0.00028835	-0.15704	-0.00015288	973.5197123443484	87.873	1.0194	87.873	87.491	88.51	0					52	19	4	0	0	0	0.019499	1	32332	32332		114.2	39.273	1	75147000			41768	5524	30694	30940	40689	40689					0.02542043969435781
QTDPTLLSV	9	Unmodified	_QTDPTLLSV_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-MSMS	A375_MHC_IP_R2	2	487.3119812011719	2	487.263665	972.512776	-0.47343	-0.00023069	0.063366	3.0876E-05	-0.41007	-0.00019981	487.2636568624062	87.104	1.2653	87.837	87.306	88.571	0.733					57	24	4	0	0	0	0.0092471	2	33169	33158;33169		103.35	25.204	1	34074000			41769	5524	30694	30940	40690;40691	40691					0.02542043969435781
QTDPTLLSV	9	Unmodified	_QTDPTLLSV_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-MATCH	A375_MHC_IP_R2	2		1	973.520053	972.512776	0.074487	7.2515E-05	-0.22507	-0.00021911	-0.15059	-0.0001466	973.5197888980081	87.056	0.96103	87.789	87.407	88.368	0.73301	-0.041788	3.1536E-05	NaN	114.2	55	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71278000			41770	5524	30694	30940							0.02542043969435781
QTDPVTLQY	9	Unmodified	_QTDPVTLQY_					0	0	0		nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2;HELZ2|p.D2407Afs*38|1|0.4|ENSG00000130589|chr20:63560856-63560856|T/-|frameshift_variant	nc|ENSG00000130589|Q9BYK8|HELZ2	nc|ENSG00000130589|Q9BYK8|HELZ2	MULTI-MSMS	A375_MHC_IP_R1	1	533.6819458007812	2	532.766571	1063.51859	-0.50471	-0.00026889	-0.092561	-4.9314E-05	-0.59727	-0.0003182	532.7664812469361	70.352	0.8671	70.352	69.983	70.85	0					49	16	4	0	0	0	0.084766	1	25622	25622		53.404	15.43	1	32740000			41771	14599	30695	30941	40692	40692					-0.010628575188775358
QTDPVTLQY	9	Unmodified	_QTDPVTLQY_					0	0	0		nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2;HELZ2|p.D2407Afs*38|1|0.4|ENSG00000130589|chr20:63560856-63560856|T/-|frameshift_variant	nc|ENSG00000130589|Q9BYK8|HELZ2	nc|ENSG00000130589|Q9BYK8|HELZ2	MULTI-MSMS	A375_MHC_IP_R2	2	532.6927490234375	2	532.766571	1063.51859	-0.6381	-0.00033996	0.21232	0.00011312	-0.42578	-0.00022684	532.7666141631869	69.735	0.86517	70.469	70.132	70.997	0.73421					45	16	4	0	0	0	0.59266	1	26550	26550		15.248	0.41021	1	35462000			41772	14599	30695	30941	40693	40693					-0.010628575188775358
QTDPVTLQY	9	Unmodified	_QTDPVTLQY_					0	0	0		nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2;HELZ2|p.D2407Afs*38|1|0.4|ENSG00000130589|chr20:63560856-63560856|T/-|frameshift_variant	nc|ENSG00000130589|Q9BYK8|HELZ2	nc|ENSG00000130589|Q9BYK8|HELZ2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	532.766571	1063.51859	-0.6381	-0.00033996	0.21232	0.00011312	-0.42578	-0.00022684	532.7666141631869	69.735	0.86517	70.469	70.132	70.997	0.73421	0.058547	0.00021488	NaN	53.404	45	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35462000			41773	14599	30695	30941							-0.010628575188775358
QTDQMVFNAY	10	Oxidation (M)	_QTDQM(Oxidation (M))VFNAY_		QTDQM(1)VFNAY		QTDQM(200)VFNAY	0	0	1		ENST00000523091.5_1_8:23112705-23118098:+|nuORF;ENST00000517325.5_1_8:23104188-23118109:+|nuORF;ENSG00000147457|ENST00000397677|CHMP7	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	617.1660766601562	2	616.766245	1231.51794	-0.26501	-0.00016345	-0.18076	-0.00011149	-0.44577	-0.00027494	616.7660043867079	63.011	0.76663	63.011	62.711	63.477	0					26	14	2	0	0	0	1.9289E-06	1	22737	22737		195.45	160.52	1	2361500			41774	5683	30696	30942	40694	40694		299			-0.08856020230246031
QTDQMVFNAY	10	Oxidation (M)	_QTDQM(Oxidation (M))VFNAY_		QTDQM(1)VFNAY		QTDQM(54)VFNAY	0	0	1		ENST00000523091.5_1_8:23112705-23118098:+|nuORF;ENST00000517325.5_1_8:23104188-23118109:+|nuORF;ENSG00000147457|ENST00000397677|CHMP7	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	617.66650390625	2	616.766245	1231.51794	-0.73789	-0.0004551	-0.39573	-0.00024408	-1.1336	-0.00069918	616.7660298947395	62.522	0.86058	63.264	62.774	63.634	0.74263					26	16	2	0	0	0	0.15514	1	23618	23618		53.833	43.009	1	3329400			41775	5683	30696	30942	40695	40695		299			-0.08856020230246031
QTDQMVFNAY	10	Unmodified	_QTDQMVFNAY_					0	0	0		ENST00000523091.5_1_8:23112705-23118098:+|nuORF;ENST00000517325.5_1_8:23104188-23118109:+|nuORF;ENSG00000147457|ENST00000397677|CHMP7	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	609.1690673828125	2	608.768788	1215.52302	-0.28506	-0.00017354	-0.52811	-0.0003215	-0.81317	-0.00049503	608.7685565661067	83.014	0.65902	83.014	82.772	83.432	0					25	12	3	0	0	0	0.24808	1	30385	30385		63.961	34.879	1	3502200			41776	5683	30696	30943	40696	40696					-0.07611716367614463
QTDQMVFNAY	10	Unmodified	_QTDQMVFNAY_					0	0	0		ENST00000523091.5_1_8:23112705-23118098:+|nuORF;ENST00000517325.5_1_8:23104188-23118109:+|nuORF;ENSG00000147457|ENST00000397677|CHMP7	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	609.1686401367188	2	608.768788	1215.52302	-0.47098	-0.00028672	0.37141	0.0002261	-0.099569	-6.0614E-05	608.7688151091796	82.465	0.70812	83.208	82.94	83.648	0.74294					28	13	4	0	0	0	0.0926	1	31316	31316		86.332	48.156	1	4092200			41777	5683	30696	30943	40697	40697					-0.07611716367614463
QTEALRESTS	10	Unmodified	_QTEALRESTS_					0	0	0			REV__nc|ENSG00000136758|Q96TA2-3|YME1L1	REV__nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	A375_MHC_IP_R2	2	561.7005615234375	2	561.275292	1120.53603	-0.97926	-0.00054963	-0.78059	-0.00043812	-1.7598	-0.00098776	561.2748955415674	52.13	0.55685	52.882	52.677	53.234	0.75225					17	10	2	0	0	0	0.47255	1	19619	19619		29.841	6.0508	1	3180800	+		41778	18957	30697	30944	40698	40698					-0.01941561983903739
QTEDNMLFY	9	Oxidation (M)	_QTEDNM(Oxidation (M))LFY_		QTEDNM(1)LFY		QTEDNM(44)LFY	0	0	1		ENSG00000141452|ENST00000269221|RMC1;ENST00000591367.5_1_18:21109371-21111665:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-MSMS	A375_MHC_IP_R1	1	588.6228637695312	2	588.747521	1175.48049	-0.23024	-0.00013555	0.1627	9.5787E-05	-0.067541	-3.9765E-05	588.7476160948983	81.895	3.3936	81.895	80.948	84.341	0					99	66	2	0	0	0	0.13797	1	30114	30114		43.858	7.7313	1	3776100			41779	5242	30698	30945	40699	40699		282			-0.1002311149588877
QTEDNMLFY	9	Oxidation (M)	_QTEDNM(Oxidation (M))LFY_		QTEDNM(1)LFY		QTEDNM(56)LFY	0	0	1		ENSG00000141452|ENST00000269221|RMC1;ENST00000591367.5_1_18:21109371-21111665:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-SECPEP	A375_MHC_IP_R1	1	589.1472778320312	2	588.747521	1175.48049	-0.33171	-0.00019529	-0.18348	-0.00010802	-0.51519	-0.00030332	588.7475257718244	77.201	0.86306	77.201	76.827	77.69	0					47	16	4	0	0	0	0.13064	1	28125	28125		56.177	20.05	1	10797000			41780	5242	30698	30945	40700	40700		282			-0.1002311149588877
QTEDNMLFY	9	Unmodified	_QTEDNMLFY_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000591367.5_1_18:21109371-21111665:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-SECPEP	A375_MHC_IP_R1	1	581.14990234375	2	580.750064	1159.48558	-0.22198	-0.00012892	0.083887	4.8717E-05	-0.1381	-8.0199E-05	580.7498301383984	99.437	1.0123	99.437	98.762	99.774	0					31	15	3	0	0	0	0.083712	1	36479	36479		74.929	57.987	1	6554500			41781	5242	30698	30946	40701	40701					-0.08778807633257202
QTEDNMLFY	9	Unmodified	_QTEDNMLFY_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000591367.5_1_18:21109371-21111665:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-MSMS	A375_MHC_IP_R2	2	581.6528930664062	2	580.750064	1159.48558	-0.23048	-0.00013385	0.1824	0.00010593	-0.048075	-2.792E-05	580.7500419590583	98.745	1.2724	99.505	98.995	100.27	0.75977					36	14	4	0	0	0	0.034481	1	37406	37406		71.134	47.113	1	8287900			41782	5242	30698	30946	40702	40702					-0.08778807633257202
QTEERVQPEY	10	Unmodified	_QTEERVQPEY_					0	0	0		ENST00000496906.1_1_9:35750742-35753913:+|nuORF;ENSG00000107185|ENST00000378078|RGP1	ENST00000496906.1_1_9:35750742-35753913:+|nuORF	ENST00000496906.1_1_9:35750742-35753913:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	640.4976806640625	2	639.801674	1277.58879	-0.84856	-0.00054291	0.026575	1.7003E-05	-0.82198	-0.00052591	639.8018115979527	27.002	0.2993	27.002	26.828	27.128	0					10	5	2	0	0	0	0.63381	1	8150	8150		14.405	6.7964	1	4041000			41783	2730	30699	30947	40703	40703					-0.03889603921084017
QTEERVQPEY	10	Unmodified	_QTEERVQPEY_					0	0	0		ENST00000496906.1_1_9:35750742-35753913:+|nuORF;ENSG00000107185|ENST00000378078|RGP1	ENST00000496906.1_1_9:35750742-35753913:+|nuORF	ENST00000496906.1_1_9:35750742-35753913:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	640.201171875	2	639.801674	1277.58879	-1.1375	-0.00072777	-0.060362	-3.8619E-05	-1.1979	-0.00076639	639.8016396912044	26.432	0.35477	27.092	26.907	27.262	0.65992					13	6	3	0	0	0	0.41205	1	8959	8959		33.445	3.6043	1	2834100			41784	2730	30699	30947	40704	40704					-0.03889603921084017
QTEFLMKY	8	Unmodified	_QTEFLMKY_					0	0	0		nc|ENSG00000177238|Q6ZMU5-2|TRIM72;ENSG00000177238|ENST00000322122|TRIM72	nc|ENSG00000177238|Q6ZMU5-2|TRIM72	nc|ENSG00000177238|Q6ZMU5-2|TRIM72	MULTI-MSMS	A375_MHC_IP_R2	2	530.705322265625	2	530.26261	1058.51067	-0.6613	-0.00035066	-2.2481	-0.0011921	-2.9094	-0.0015428	530.2608749069434	64.874	0.91484	65.612	65.257	66.172	0.73812					32	17	3	0	0	0	0.70843	1	24654	24654		32.117	5.2333	1	1404100			41785	8070	30700	30948	40705	40705					-0.016247080400262348
QTEHSSTIS	9	Unmodified	_QTEHSSTIS_					0	0	0			REV__ENSG00000162621|ENST00000294635|LRRC53	REV__ENSG00000162621|ENST00000294635|LRRC53	MULTI-MSMS	A375_MHC_IP_R1	1	495.18218994140625	2	495.230353	988.446153	-0.40722	-0.00020167	0.88867	0.0004401	0.48145	0.00023843	495.2313986226206	60.936	0.50788	60.936	60.719	61.227	0					17	9	3	0	0	0	0.51106	1	21924	21924		19.257	1.122	1	1306300	+		41786	20277	30701	30949	40706	40706					-0.04853191592474104
QTEIKTYPI	9	Unmodified	_QTEIKTYPI_					0	0	0			REV__ENST00000507810.5_1_5:111479536-111545647:-|nuORF	REV__ENST00000507810.5_1_5:111479536-111545647:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	547.3540649414062	2	546.800414	1091.58628	-0.91011	-0.00049765	-0.089086	-4.8712E-05	-0.99919	-0.00054636	546.8001905248791	55.156	0.40648	55.907	55.678	56.084	0.75075					12	7	2	0	0	0	0.69507	1	20750	20750		13.906	5.7505	1	2159900	+		41787	18499	30702	30950	40707	40707					0.04414592411899321
QTEKGITV	8	Unmodified	_QTEKGITV_					0	0	0		ENSG00000031698|ENST00000234677|SARS1;ENST00000468588.1_1_1:109779820-109780507:+|nuORF	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	875.3040161132812	1	875.483273	874.475997	-1.136	-0.00099456	0.51209	0.00044832	-0.62393	-0.00054624	875.4836409267318	53.32	0.71521	54.071	53.79	54.505	0.75105					20	13	2	0	0	0	0.68831	1	20203	20203		27.629	2.6378	1	8150200			41788	1114	30703	30951	40708	40708					0.033737921435204044
QTEKRDFRFQM	11	Unmodified	_QTEKRDFRFQM_					0	0	0		tr|U7SND9|U7SND9_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01809PE=4SV=1	tr|U7SND9|U7SND9_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01809PE=4SV=1	tr|U7SND9|U7SND9_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01809PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	495.1763610839844	3	495.913754	1484.71943	-0.38767	-0.00019225	0.2598	0.00012884	-0.12787	-6.3413E-05	495.9140267910512	83.303	0.30725	83.303	83.226	83.533	0					7	5	2	0	0	0	0.99819	1	30529	30529		3.5927	0	1	1233800			41789	29547	30704	30952	40709	40709					-0.0035391147391692357
QTELENQLEY	10	Unmodified	_QTELENQLEY_					0	0	0		ENSG00000135090|ENST00000392533|TAOK3	ENSG00000135090|ENST00000392533|TAOK3	ENSG00000135090|ENST00000392533|TAOK3	MULTI-MSMS	A375_MHC_IP_R1	1	634.227294921875	2	633.796057	1265.57756	-0.5681	-0.00036006	0.16898	0.0001071	-0.39913	-0.00025297	634.297847981817	68.796	0.35381	68.796	68.616	68.969	0					11	6	2	0	0	0	0.41205	1	25006	25006		33.445	14.188	1	950880			41790	4643	30705	30953	40710	40710					-0.044604260152027564
QTELGNQLEY	10	Unmodified	_QTELGNQLEY_					0	0	0		nc|ENSG00000149930|Q9UL54-2|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-3|TAOK2	nc|ENSG00000149930|Q9UL54-2|TAOK2	nc|ENSG00000149930|Q9UL54-2|TAOK2	MULTI-SECPEP	A375_MHC_IP_R1	1	598.185546875	2	597.785492	1193.55643	-0.58824	-0.00035164	0.74887	0.00044766	0.16063	9.6021E-05	597.7859008620886	66.36	0.45807	66.36	66.122	66.58	0					14	8	2	0	0	0	0.38298	1	24042	24042		51.415	5.3943	1	2862000			41791	5834	30706	30954	40711	40711					-0.03260391324079137
QTELGNQLEY	10	Unmodified	_QTELGNQLEY_					0	0	0		nc|ENSG00000149930|Q9UL54-2|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-3|TAOK2	nc|ENSG00000149930|Q9UL54-2|TAOK2	nc|ENSG00000149930|Q9UL54-2|TAOK2	MULTI-MSMS	A375_MHC_IP_R2	2	598.184814453125	2	597.785492	1193.55643	-0.74196	-0.00044353	2.3399	0.0013988	1.598	0.00095526	597.7854879700386	65.768	0.5083	66.506	66.222	66.731	0.73811					23	9	4	0	0	0	0.20671	1	24906	24906		55.235	9.2137	1	3369700			41792	5834	30706	30954	40712	40712					-0.03260391324079137
QTELKRFLAFE	11	Unmodified	_QTELKRFLAFE_					0	0	0		RWDD3|p.H228L|1|0.37|ENSG00000122481|chr1:95246651-95246651|A/T|missense_variant	RWDD3|p.H228L|1|0.37|ENSG00000122481|chr1:95246651-95246651|A/T|missense_variant	RWDD3|p.H228L|1|0.37|ENSG00000122481|chr1:95246651-95246651|A/T|missense_variant	MSMS	A375_MHC_IP_R2	2	691.7747192382812	2	691.377352	1380.74015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.526	1	88.258	87.758	88.758	0.7318								0	0	0	0.1632	1	33289	33289		2.086	0.43339	1				41793	29100	30707	30955	40713	40713					0.0650100217740146
QTELKRTF	8	Unmodified	_QTELKRTF_					0	0	0		ENSG00000151846|ENST00000281589|PABPC3	ENSG00000151846|ENST00000281589|PABPC3	ENSG00000151846|ENST00000281589|PABPC3	MULTI-SECPEP	A375_MHC_IP_R2	2	511.6631164550781	2	511.785099	1021.55564	-1.1709	-0.00059927	-1.864	-0.00095397	-3.0349	-0.0015532	512.2852070879536	57.106	0.51076	57.856	57.459	57.969	0.75014					12	9	2	0	0	0	0.93661	1	21486	21486		15.847	0	1	801560			41794	5931	30708	30956	40714	40714					0.045728588175165896
QTELPTQALF	10	Unmodified	_QTELPTQALF_					0	0	0			REV__ENST00000542747.5_1_6:149997344-150023094:-|nuORF	REV__ENST00000542747.5_1_6:149997344-150023094:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	576.3466796875	2	574.303321	1146.59209	-0.6581	-0.00037795	-0.025697	-1.4758E-05	-0.6838	-0.00039271	574.3032240832506	25.403	1.1209	26.046	25.465	26.585	0.64368					64	21	5	0	0	0	0.48529	1	8430	8430		29.082	1.4528	1	41044000	+		41795	18582	30709	30957	40715	40715					0.024656909235545754
QTELSQLLK	9	Unmodified	_QTELSQLLK_					0	0	0		ENST00000380591.7_1_5:72801034-72801127:+|nuORF	ENST00000380591.7_1_5:72801034-72801127:+|nuORF	ENST00000380591.7_1_5:72801034-72801127:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	530.705322265625	2	530.305864	1058.59717	-0.73165	-0.000388	0.52741	0.00027969	-0.20424	-0.00010831	530.3060767433745	65.998	0.71007	65.998	65.616	66.326	0					20	13	2	0	0	0	0.13244	1	23870	23870		59.368	21.193	1	2511500			41796	11353	30710	30958	40716	40716					0.07021994786191499
QTELSQLLK	9	Unmodified	_QTELSQLLK_					0	0	0		ENST00000380591.7_1_5:72801034-72801127:+|nuORF	ENST00000380591.7_1_5:72801034-72801127:+|nuORF	ENST00000380591.7_1_5:72801034-72801127:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	530.705322265625	2	530.305864	1058.59717	-0.65447	-0.00034707	-0.42114	-0.00022333	-1.0756	-0.0005704	530.3055788236	65.003	0.45637	65.741	65.511	65.968	0.73811					13	8	2	0	0	0	0.47674	1	24654	24654		29.841	15.002	1	2965800			41797	11353	30710	30958	40717	40717					0.07021994786191499
QTELTNQLEY	10	Unmodified	_QTELTNQLEY_					0	0	0		ENSG00000160551|ENST00000261716|TAOK1;ENST00000578653.1_1_17:27849339-27857712:+|nuORF	ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MULTI-MSMS	A375_MHC_IP_R2	2	620.197998046875	2	619.7986	1237.58265	-0.59367	-0.00036796	0.21535	0.00013347	-0.37832	-0.00023448	619.798153710569	68.693	0.45415	69.429	69.121	69.575	0.73511					19	8	3	0	0	0	0.014124	1	26045	26045		103.42	67.292	1	2349600			41798	6424	30711	30959	40718	40718					-0.02664122152600612
QTENLGVVYY	10	Unmodified	_QTENLGVVYY_					0	0	0		nc|ENSG00000164031|Q8TBM8-2|DNAJB14;ENSG00000164031|ENST00000442697|DNAJB14	nc|ENSG00000164031|Q8TBM8-2|DNAJB14	nc|ENSG00000164031|Q8TBM8-2|DNAJB14	MULTI-SECPEP	A375_MHC_IP_R2	2	594.0714721679688	2	593.292953	1184.57135	-0.46564	-0.00027626	-0.53555	-0.00031774	-1.0012	-0.000594	593.2922946170451	84.46	0.35339	85.196	85.018	85.372	0.73601					12	6	3	0	0	0	0.90513	1	32125	32125		8.1555	0	1	1182500			41799	6760	30712	30960	40719	40719					-0.013548994561006111
QTENLYNL	8	Unmodified	_QTENLYNL_					0	0	0			REV__nc|ENSG00000126838|P20742-2|PZP	REV__nc|ENSG00000126838|P20742-2|PZP	MULTI-SECPEP	A375_MHC_IP_R2	2	498.1446838378906	2	497.745639	993.476725	-0.75697	-0.00037678	-0.22938	-0.00011418	-0.98635	-0.00049095	497.74542413461825	61.904	0.40306	62.647	62.471	62.874	0.74263					14	7	2	0	0	0	0.36486	1	23501	23501		36.127	0	1	1881400	+		41800	18400	30713	30961	40720	40720					-0.020274132074405316
QTEPVAGNYY	10	Unmodified	_QTEPVAGNYY_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-MSMS	A375_MHC_IP_R1	1	571.6857299804688	2	571.261653	1140.50875	-0.17427	-9.9554E-05	0.049936	2.8527E-05	-0.12433	-7.1027E-05	571.261553207785	51.292	0.65963	51.292	50.915	51.575	0					27	12	3	0	0	0	0.0036544	2	18252	18182;18252		106.94	70.813	1	7093400			41801	2535	30714	30962	40721;40722	40722					-0.05588045524291374
QTEPVAGNYY	10	Unmodified	_QTEPVAGNYY_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-MSMS	A375_MHC_IP_R2	2	571.661865234375	2	571.261653	1140.50875	-0.39899	-0.00022793	0.12799	7.3114E-05	-0.271	-0.00015481	571.261623162259	50.73	0.60587	51.484	51.159	51.765	0.75406					28	11	4	0	0	0	0.011212	2	19073	19073;19105		125.53	83.69	1	6123800			41802	2535	30714	30962	40723;40724	40723					-0.05588045524291374
QTESDYSYY	9	Unmodified	_QTESDYSYY_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-MSMS	A375_MHC_IP_R1	1	578.626953125	2	578.227476	1154.4404	0.25839	0.00014941	-0.49063	-0.0002837	-0.23224	-0.00013429	578.2271493722868	48.697	0.60765	48.697	48.476	49.084	0					28	11	3	0	0	0	0.27064	1	17189	17189		32.786	21.145	1	3702000			41803	2385	30715	30963	40725	40725					-0.13064334894806962
QTESDYSYY	9	Unmodified	_QTESDYSYY_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	A375_MHC_IP_R2	2	578.627197265625	2	578.227476	1154.4404	-0.14678	-8.4875E-05	-0.23056	-0.00013332	-0.37734	-0.00021819	578.227210991899	48.13	0.75523	48.891	48.632	49.387	0.76128					35	14	3	0	0	0	0.14422	1	18097	18097		43.858	26.745	1	4099500			41804	2385	30715	30963	40726	40726					-0.13064334894806962
QTESQQIRY	9	Unmodified	_QTESQQIRY_					0	0	0		nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3	nc|ENSG00000133657|Q9H7F0|ATP13A3	nc|ENSG00000133657|Q9H7F0|ATP13A3	MULTI-SECPEP	A375_MHC_IP_R1	1	577.1856079101562	2	576.785827	1151.5571	-0.40368	-0.00023284	-0.012227	-7.0524E-06	-0.41591	-0.00023989	576.7857981012287	25.841	0.55765	25.841	25.664	26.221	0					32	10	4	0	0	0	1.0578E-13	1	7601	7601		249.55	163.22	1	68327000			41805	4521	30716	30964	40727	40727					-0.012615518843858808
QTESQQIRY	9	Unmodified	_QTESQQIRY_					0	0	0		nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3	nc|ENSG00000133657|Q9H7F0|ATP13A3	nc|ENSG00000133657|Q9H7F0|ATP13A3	MULTI-SECPEP	A375_MHC_IP_R2	2	577.1853637695312	2	576.785827	1151.5571	-0.60555	-0.00034928	-0.23961	-0.00013821	-0.84517	-0.00048748	576.7857151465494	25.304	0.56081	25.947	25.719	26.28	0.64368					29	9	4	0	0	0	1.0239E-13	1	8443	8443		266.8	181.16	1	67836000			41806	4521	30716	30964	40728	40728					-0.012615518843858808
QTETKTITY	9	Unmodified	_QTETKTITY_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	nc|ENSG00000079819|O43491-3|EPB41L2	nc|ENSG00000079819|O43491-3|EPB41L2	MULTI-SECPEP	A375_MHC_IP_R1	1	543.1796875	2	542.779679	1083.5448	-0.80137	-0.00043497	0.64397	0.00034954	-0.15739	-8.5429E-05	542.7800555996921	26.972	0.50149	26.972	26.728	27.229	0					16	9	2	0	0	0	0.16595	1	8115	8115		61.602	32.52	1	10768000			41807	1704	30717	30965	40729	40729					0.0063741165256487875
QTETLGVGY	9	Unmodified	_QTETLGVGY_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-MSMS	A375_MHC_IP_R1	1	484.64019775390625	2	484.24019	966.465826	-0.32289	-0.00015636	0.35747	0.0001731	0.03458	1.6745E-05	484.2401205904795	60.897	0.61122	60.897	60.514	61.126	0					21	11	2	0	0	0	0.015701	1	21921	21921		88.954	36.686	1	3592500			41808	3109	30718	30966	40730	40730					-0.018748155817092993
QTETLGVGY	9	Unmodified	_QTETLGVGY_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-MSMS	A375_MHC_IP_R2	2	484.6398620605469	2	484.24019	966.465826	-0.91451	-0.00044284	0.10448	5.0595E-05	-0.81002	-0.00039224	484.2400220933189	60.238	0.96565	60.983	60.448	61.414	0.74503					29	18	3	0	0	0	0.0094788	1	22783	22783		107.19	45.83	1	4893300			41809	3109	30718	30966	40731	40731					-0.018748155817092993
QTFALFCKMHV	11	Unmodified	_QTFALFCKMHV_					0	0	0			REV__ENST00000481405.1_1_3:45038716-45077413:+|nuORF	REV__ENST00000481405.1_1_3:45038716-45077413:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	442.61029052734375	3	442.222871	1323.64678	-0.23301	-0.00010304	0.53652	0.00023726	0.30351	0.00013422	442.2231100348207	37.909	0.50992	37.909	37.658	38.168	0					26	9	4	0	0	0	0.7039	1	12743	12743		8.7518	2.8836	1	11205000	+		41810	20417	30719	30967	40732	40732					-0.002093368010264385
QTFFFFFFFFF	11	Unmodified	_QTFFFFFFFFF_					0	0	0		ENST00000452676.6_1_19:53662039-53662234:-|nuORF	ENST00000452676.6_1_19:53662039-53662234:-|nuORF	ENST00000452676.6_1_19:53662039-53662234:-|nuORF	MSMS	A375_MHC_IP_R1	1	786.3720092773438	2	786.373549	1570.73255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.426	1	81.426	80.926	81.926	0								0	0	0	0.16337	1	29755	29755		1.1933	0.88631	1				41811	12087	30720	30968	40733	40733					-0.02999105352228071
QTFLSEIRW	9	Unmodified	_QTFLSEIRW_					0	0	0		ENST00000506960.5_1_5:80911285-80946133:-|nuORF;ENST00000598159.6_1_19:18538161-18542842:+|nuORF;nc|ENSG00000145687|P81877-2|SSBP2;nc|ENSG00000145687|P81877-4|SSBP2;nc|ENSG00000145687|P81877-5|SSBP2;nc|ENSG00000145687|P81877-3|SSBP2;nc|ENSG00000157216|Q9BWW4-2|SSBP3;nc|ENSG00000145687|P81877|SSBP2;nc|ENSG00000130511|Q9BWG4-2|SSBP4;nc|ENSG00000157216|Q9BWW4-3|SSBP3;ENSG00000145687|ENST00000615665|SSBP2;ENSG00000130511|ENST00000270061|SSBP4;ENSG00000157216|ENST00000610401|SSBP3;ENST00000508912.1_1_5:80932374-80946133:-|nuORF	ENST00000506960.5_1_5:80911285-80946133:-|nuORF	ENST00000506960.5_1_5:80911285-80946133:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	590.7118530273438	2	590.31148	1178.60841	-0.094557	-5.5818E-05	0.34766	0.00020523	0.2531	0.00014941	590.311309121157	109.31	0.3564	109.31	109.12	109.47	0					9	6	2	0	0	0	0.41524	1	40115	40115		30.703	15.455	1	1718000			41812	4248	30721	30969	40734	40734					0.026248168803022054
QTFLSEIRW	9	Unmodified	_QTFLSEIRW_					0	0	0		ENST00000506960.5_1_5:80911285-80946133:-|nuORF;ENST00000598159.6_1_19:18538161-18542842:+|nuORF;nc|ENSG00000145687|P81877-2|SSBP2;nc|ENSG00000145687|P81877-4|SSBP2;nc|ENSG00000145687|P81877-5|SSBP2;nc|ENSG00000145687|P81877-3|SSBP2;nc|ENSG00000157216|Q9BWW4-2|SSBP3;nc|ENSG00000145687|P81877|SSBP2;nc|ENSG00000130511|Q9BWG4-2|SSBP4;nc|ENSG00000157216|Q9BWW4-3|SSBP3;ENSG00000145687|ENST00000615665|SSBP2;ENSG00000130511|ENST00000270061|SSBP4;ENSG00000157216|ENST00000610401|SSBP3;ENST00000508912.1_1_5:80932374-80946133:-|nuORF	ENST00000506960.5_1_5:80911285-80946133:-|nuORF	ENST00000506960.5_1_5:80911285-80946133:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	590.31148	1178.60841	-0.54407	-0.00032117	0.25491	0.00015048	-0.28916	-0.00017069	590.3114365762996	108.4	0.40749	109.15	108.97	109.37	0.75436	-0.076504	-3.3671E-05	NaN	30.703	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1299500			41813	4248	30721	30969							0.026248168803022054
QTFQTISHN	9	Unmodified	_QTFQTISHN_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MULTI-MSMS	A375_MHC_IP_R1	1	538.2185668945312	2	538.261988	1074.50942	-0.65578	-0.00035298	0.84569	0.0004552	0.18991	0.00010222	538.2623172731671	31.412	0.50721	31.412	31.262	31.769	0					14	9	2	0	0	0	0.61998	1	10019	10019		13.906	5.3128	1	1150200	+		41814	19731	30722	30970	40735	40735					-0.024852060845660162
QTFSAVRYSDG	11	Unmodified	_QTFSAVRYSDG_					0	0	0		nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8	nc|ENSG00000197150|Q9NUT2-3|ABCB8	nc|ENSG00000197150|Q9NUT2-3|ABCB8	MULTI-MSMS	A375_MHC_IP_R2	2	616.1903076171875	2	615.791109	1229.56767	-0.99373	-0.00061193	-0.42696	-0.00026292	-1.4207	-0.00087485	615.7906412553145	56.497	0.51056	57.248	57.051	57.561	0.75014					22	9	3	0	0	0	0.7039	1	21346	21346		15.248	15.248	1	3545400			41815	9123	30723	30971	40736	40736					-0.03793569229969762
QTFSHWESY	9	Unmodified	_QTFSHWESY_					0	0	0			REV__ENSG00000134755|ENST00000280904|DSC2;REV__nc|ENSG00000134762|Q14574-2|DSC3	REV__ENSG00000134755|ENST00000280904|DSC2	MULTI-SECPEP	A375_MHC_IP_R2	2	593.1535034179688	2	592.753995	1183.49344	-0.57974	-0.00034365	-0.30486	-0.0001807	-0.8846	-0.00052435	592.7539096029301	31.842	0.96429	32.579	32.198	33.162	0.73691					33	18	3	0	0	0	0.61452	1	11308	11308		21.747	0	1	5816500	+		41816	18797;16038	30724	30972	40737	40737					-0.09096912321479067
QTFSLNRDL	9	Unmodified	_QTFSLNRDL_					0	0	0		nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	MULTI-SECPEP	A375_MHC_IP_R2	2	365.9244384765625	3	365.192734	1092.55637	-0.24729	-9.0308E-05	-0.50028	-0.0001827	-0.74757	-0.00027301	365.19277124596215	24.368	1.0672	25.011	24.043	25.11	0.64368					24	20	2	0	0	0	0.67483	1	7692	7692		6.6304	0.0069188	1	4555600			41817	1288	30725	30973	40738	40738					0.01379653466574382
QTFSSKTEW	9	Unmodified	_QTFSSKTEW_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000575116.1_1_17:1555319-1557183:-|nuORF;ENST00000576585.1_1_17:1556769-1557303:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R1	1	557.6640014648438	2	557.264196	1112.51384	-0.72759	-0.00040546	0.49867	0.00027789	-0.22892	-0.00012757	557.2643093780273	41.12	0.60669	41.12	40.813	41.419	0					31	11	4	0	0	0	0.024574	3	14145	14100;14145;14175		79.596	43.09	1	14139000			41818	7864	30726	30974	40739;40740;40741	40740					-0.03791741661666492
QTFSSKTEW	9	Unmodified	_QTFSSKTEW_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000575116.1_1_17:1555319-1557183:-|nuORF;ENST00000576585.1_1_17:1556769-1557303:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R2	2	557.6637573242188	2	557.264196	1112.51384	-0.8304	-0.00046275	0.33767	0.00018817	-0.49273	-0.00027458	557.2643441996446	40.339	0.81297	41.114	40.727	41.54	0.77451					33	15	3	0	0	0	0.015356	1	14916	14916		89.401	49.162	1	14954000			41819	7864	30726	30974	40742	40742					-0.03791741661666492
QTFVNSAIRF	10	Unmodified	_QTFVNSAIRF_					0	0	0		nc|ENSG00000133063|Q13231-2|CHIT1;nc|ENSG00000133063|Q13231-3|CHIT1;nc|ENSG00000133063|Q13231-4|CHIT1;ENSG00000133063|ENST00000367229|CHIT1	nc|ENSG00000133063|Q13231-2|CHIT1	nc|ENSG00000133063|Q13231-2|CHIT1	MULTI-SECPEP	A375_MHC_IP_R2	2	394.97186279296875	3	394.880379	1181.61931	-0.38652	-0.00015263	0.11827	4.6704E-05	-0.26824	-0.00010592	394.8802970717438	35.362	0.70645	36.126	35.677	36.384	0.76338					15	13	2	0	0	0	0.93733	1	12824	12824		5.4027	1.2132	1	1248200			41820	4480	30727	30975	40743	40743					0.03576219254591706
QTFVNSAIRF	10	Unmodified	_QTFVNSAIRF_					0	0	0		nc|ENSG00000133063|Q13231-2|CHIT1;nc|ENSG00000133063|Q13231-3|CHIT1;nc|ENSG00000133063|Q13231-4|CHIT1;ENSG00000133063|ENST00000367229|CHIT1	nc|ENSG00000133063|Q13231-2|CHIT1	nc|ENSG00000133063|Q13231-2|CHIT1	MULTI-MATCH	A375_MHC_IP_R1	1		3	394.880379	1181.61931	-0.14458	-5.709E-05	-0.57146	-0.00022566	-0.71603	-0.00028275	394.88002637825997	36.364	0.30521	36.364	36.133	36.439	0	0.11941	-0.00026362	NaN	5.4027	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1605200			41821	4480	30727	30975							0.03576219254591706
QTGFIEIHL	9	Unmodified	_QTGFIEIHL_					0	0	0			REV__ENSG00000115170|ENST00000434821|ACVR1	REV__ENSG00000115170|ENST00000434821|ACVR1	MULTI-MSMS	A375_MHC_IP_R1	1	353.2576904296875	3	353.194075	1056.5604	-0.035013	-1.2366E-05	-0.0046394	-1.6386E-06	-0.039652	-1.4005E-05	353.19401839904924	39.371	0.96523	39.371	39.033	39.999	0					50	18	4	0	0	0	0.65721	1	13663	13663		7.1017	2.2047	1	61520000	+		41822	17860	30728	30976	40744	40744					0.034377429602727716
QTGKKVPI	8	Unmodified	_QTGKKVPI_					0	0	0			REV__nc|ENSG00000163453|Q16270-2|IGFBP7	REV__nc|ENSG00000163453|Q16270-2|IGFBP7	MULTI-SECPEP	A375_MHC_IP_R1	1	435.2669677734375	2	435.774003	869.533452	-0.025542	-1.113E-05	-0.30563	-0.00013319	-0.33117	-0.00014432	435.77379939691735	43.341	0.5088	43.341	43.146	43.655	0					12	9	2	0	0	0	0.972	1	15011	15011		2.3027	0	1	1164800	+		41823	27317	30729	30977	40745	40745					0.09346679139753178
QTGLPNKISHL	11	Unmodified	_QTGLPNKISHL_					0	0	0			REV__COL24A1|p.R1538Q|1|0.35|ENSG00000171502|chr1:85744725-85744725|C/T|missense_variant	REV__COL24A1|p.R1538Q|1|0.35|ENSG00000171502|chr1:85744725-85744725|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	603.7007446289062	2	604.343312	1206.67207	-0.76315	-0.00046121	0.1461	8.8293E-05	-0.61705	-0.00037291	604.3434109792424	29.864	1.0619	30.563	30.335	31.397	0.69872					63	20	5	0	0	0	0.9398	1	10523	10523		21.59	9.3495	1	167820000	+		41824	15825	30730	30978	40746	40746					0.07700177317428825
QTHLRATPTK	10	Unmodified	_QTHLRATPTK_					0	0	0		ENSG00000105732|ENST00000359044|ZNF574;nc|ENSG00000105732|Q6ZN55-2|ZNF574	ENSG00000105732|ENST00000359044|ZNF574	ENSG00000105732|ENST00000359044|ZNF574	MULTI-SECPEP	A375_MHC_IP_R1	1	384.60833740234375	3	384.887645	1151.64111	0.25074	9.6507E-05	2.9667	0.0011418	3.2174	0.0012384	385.2231313791488	34.175	0.25207	34.175	34.001	34.253	0					7	4	2	0	0	0	0.91057	1	11182	11182		7.0371	0	1	724360			41825	2633	30731	30979	40747	40747					0.07135024003173385
QTHPHSRLWDP	11	Unmodified	_QTHPHSRLWDP_					0	0	0			REV__EFCAB6|p.R18Q|2|0.37|ENSG00000186976|chr22:43782266-43782266|C/T|missense_variant	REV__EFCAB6|p.R18Q|2|0.37|ENSG00000186976|chr22:43782266-43782266|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	687.235107421875	2	687.339092	1372.66363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.955	1	55.955	55.455	56.455	0								0	0	0	0.16138	1	20031	20031		11.495	1.4208	1		+		41826	16066	30732	30980	40748	40748					-0.007793765992119006
QTHVTADEW	9	Unmodified	_QTHVTADEW_					0	0	0		ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96	ENSG00000153283|ENST00000352690|CD96	ENSG00000153283|ENST00000352690|CD96	MULTI-SECPEP	A375_MHC_IP_R1	1	543.7241821289062	2	543.74617	1085.47779	-0.37393	-0.00020332	-0.2977	-0.00016188	-0.67163	-0.0003652	543.745890971408	35.813	0.40905	35.813	35.573	35.982	0					12	7	2	0	0	0	0.61452	1	11876	11876		26.268	26.268	1	4007000			41827	6023	30733	30981	40749	40749					-0.06153198838546814
QTIEPQVW	8	Unmodified	_QTIEPQVW_					0	0	0			REV__ENSG00000075240|ENST00000406902|GRAMD4	REV__ENSG00000075240|ENST00000406902|GRAMD4	MULTI-SECPEP	A375_MHC_IP_R1	1	500.4746398925781	2	500.758549	999.502546	-0.59761	-0.00029926	0.4257	0.00021317	-0.17191	-8.6086E-05	500.75868677062465	91.003	0.70903	91.003	90.641	91.35	0					20	13	2	0	0	0	0.92636	1	33427	33427		23.148	0.41214	1	1146800	+		41828	16653	30734	30982	40750	40750					0.00277481034856919
QTIKVYAQA	9	Unmodified	_QTIKVYAQA_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	A375_MHC_IP_R1	1	511.6875	2	511.287474	1020.5604	-0.064462	-3.2959E-05	-0.21295	-0.00010888	-0.27741	-0.00014184	511.287297033782	69.193	0.91293	69.193	68.819	69.732	0					36	17	3	0	0	0	0.5212	1	25112	25112		32.786	27.489	1	7529200	+		41829	21096	30735	30983	40751	40751					0.05093742960275449
QTIQLLRKF	9	Unmodified	_QTIQLLRKF_					0	0	0		ENST00000421655.1_1_9:108520752-108520932:+|nuORF;nc|ENSG00000024526|Q5TB30-2|DEPDC1;chr1:68481612-68483950|409|11.97|0.32|5.21|-|ENST00000370966|DEPDC1,DEPDC1;ENSG00000024526|ENST00000456315|DEPDC1	ENST00000421655.1_1_9:108520752-108520932:+|nuORF	ENST00000421655.1_1_9:108520752-108520932:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	383.3047790527344	3	382.904636	1145.69208	0.32328	0.00012378	0.28426	0.00010884	0.60754	0.00023263	382.90470931152686	60.134	0.35632	60.134	59.955	60.312	0					12	6	2	0	0	0	0.32889	1	21678	21678		28.495	14.88	1	1636400			41830	395	30736	30984	40752	40752					0.1250597304801886
QTIQLLRKF	9	Unmodified	_QTIQLLRKF_					0	0	0		ENST00000421655.1_1_9:108520752-108520932:+|nuORF;nc|ENSG00000024526|Q5TB30-2|DEPDC1;chr1:68481612-68483950|409|11.97|0.32|5.21|-|ENST00000370966|DEPDC1,DEPDC1;ENSG00000024526|ENST00000456315|DEPDC1	ENST00000421655.1_1_9:108520752-108520932:+|nuORF	ENST00000421655.1_1_9:108520752-108520932:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	382.904636	1145.69208	-0.50397	-0.00019297	-0.022102	-8.4631E-06	-0.52607	-0.00020144	382.9045762220393	59.14	0.35564	59.887	59.691	60.047	0.74714	-0.12371	-0.00016413	NaN	28.495	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1279300			41831	395	30736	30984							0.1250597304801886
QTKPGSLSF	9	Unmodified	_QTKPGSLSF_					0	0	0		nc|ENSG00000159216|Q01196-3|RUNX1;nc|ENSG00000159216|Q01196-4|RUNX1;nc|ENSG00000159216|Q01196-11|RUNX1;nc|ENSG00000159216|Q01196|RUNX1;nc|ENSG00000159216|Q01196-9|RUNX1;nc|ENSG00000159216|Q01196-10|RUNX1;nc|ENSG00000159216|Q01196-2|RUNX1;ENSG00000159216|ENST00000675419|RUNX1;nc|ENSG00000159216|Q01196-7|RUNX1	nc|ENSG00000159216|Q01196-3|RUNX1	nc|ENSG00000159216|Q01196-3|RUNX1	MULTI-SECPEP	A375_MHC_IP_R1	1	483.1587219238281	2	482.758549	963.502546	-0.25365	-0.00012245	-0.73542	-0.00035503	-0.98907	-0.00047748	482.75837079924906	42.31	0.5051	42.31	42.032	42.537	0					18	9	2	0	0	0	0.11711	1	14637	14637		60.074	16.216	1	3571300			41832	6359	30737	30985	40753	40753					0.019334810348595965
QTKTNVKEL	9	Unmodified	_QTKTNVKEL_					0	0	0		NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant;ENSG00000141458|ENST00000269228|NPC1;ENST00000540608.5_1_18:21119776-21166285:-|nuORF	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	530.640380859375	2	530.803488	1059.59242	-0.60558	-0.00032144	2.4035	0.0012758	1.7979	0.00095435	530.8054092196965	73.731	0.41031	74.466	74.294	74.704	0.73541					11	7	2	0	0	0	0.69381	1	28040	28040		10.8	2.644	1	1007600			41833	5244	30738	30986	40754	40754					0.0650111064342127
QTKYLGRQW	9	Unmodified	_QTKYLGRQW_					0	0	0		nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2;ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1	nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENST00000485775.5_1_1:110582506-110596531:+|nuORF	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	394.28045654296875	3	393.88049	1178.61964	-0.20669	-8.141E-05	0.38079	0.00014999	0.1741	6.8576E-05	393.8805036993341	32.591	0.40147	32.591	32.333	32.734	0					18	7	3	0	0	0	0.14606	1	10557	10557		47.594	38.618	1	7746900			41834	4147;5344	30739	30987	40755	40755					0.03747638974459733
QTKYLGRQW	9	Unmodified	_QTKYLGRQW_					0	0	0		nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2;ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1	nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENST00000485775.5_1_1:110582506-110596531:+|nuORF	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	394.2803039550781	3	393.88049	1178.61964	-0.18251	-7.1887E-05	0.008042	3.1676E-06	-0.17447	-6.872E-05	393.8804717803491	31.797	0.45465	32.534	32.3	32.755	0.73691					23	8	4	0	0	0	0.30925	1	11271	11271		49.554	44.838	1	5962600			41835	4147;5344	30739	30987	40756	40756					0.03747638974459733
QTLAQELSL	9	Unmodified	_QTLAQELSL_					0	0	0		ENSG00000163064|ENST00000295206|EN1	ENSG00000163064|ENST00000295206|EN1	ENSG00000163064|ENST00000295206|EN1	MULTI-SECPEP	A375_MHC_IP_R2	2	502.1766662597656	2	501.776939	1001.53933	-0.74903	-0.00037585	0.25383	0.00012737	-0.4952	-0.00024848	501.777050377925	39.216	0.5599	39.991	39.76	40.32	0.77451					14	10	2	0	0	0	0.40377	1	14500	14500		28.495	10.121	1	3539900			41836	6628	30740	30988	40757	40757					0.038617328607642776
QTLFRWLEQP	10	Unmodified	_QTLFRWLEQP_					0	0	0			REV__nc|ENSG00000107331|Q9BZC7|ABCA2	REV__nc|ENSG00000107331|Q9BZC7|ABCA2	MULTI-MSMS	A375_MHC_IP_R2	2	659.4825439453125	2	659.351137	1316.68772	-0.8037	-0.00052992	3.4082	0.0022472	2.6045	0.0017173	659.3532836775584	84.523	0.60727	85.259	85.018	85.626	0.73601					15	11	2	0	0	0	0.68638	1	32115	32115		14.405	0	1	2064200	+		41837	17482	30741	30989	40758	40758					0.04204463834480521
QTLFRWLEQP	10	Unmodified	_QTLFRWLEQP_					0	0	0			REV__nc|ENSG00000107331|Q9BZC7|ABCA2	REV__nc|ENSG00000107331|Q9BZC7|ABCA2	MULTI-MATCH	A375_MHC_IP_R1	1		2	659.351137	1316.68772	-0.70106	-0.00046224	1.9824	0.0013071	1.2814	0.00084488	659.8538719609874	85.419	0.66072	85.419	84.955	85.616	0	0.079591	-0.00076818	NaN	14.405	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1524800	+		41838	17482	30741	30989							0.04204463834480521
QTLFRWLEQP	10	Unmodified	_QTLFRWLEQP_					0	0	0			REV__nc|ENSG00000107331|Q9BZC7|ABCA2	REV__nc|ENSG00000107331|Q9BZC7|ABCA2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	659.351137	1316.68772	-0.8037	-0.00052992	3.4082	0.0022472	2.6045	0.0017173	659.3532836775584	84.523	0.60727	85.259	85.018	85.626	0.73601	-0.079591	0.0011119	NaN	14.405	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2064200	+		41839	17482	30741	30989							0.04204463834480521
QTLIGPGPNCE	11	Unmodified	_QTLIGPGPNCE_					0	0	0			REV__ENSG00000162851|ENST00000366514|TFB2M	REV__ENSG00000162851|ENST00000366514|TFB2M	MULTI-SECPEP	A375_MHC_IP_R1	1	565.1708374023438	2	564.771331	1127.52811	-0.42986	-0.00024277	-1.5749	-0.00088947	-2.0048	-0.0011322	564.770697868761	64.236	0.86318	64.236	63.887	64.75	0					18	15	2	0	0	0	0.81292	1	23295	23295		26.021	2.0001	1	1933500	+		41840	20312	30742	30990	40759	40759					-0.03055412505023014
QTLLLQVL	8	Unmodified	_QTLLLQVL_					0	0	0		ENST00000469433.5_1_9:109697831-109697864:+|nuORF	ENST00000469433.5_1_9:109697831-109697864:+|nuORF	ENST00000469433.5_1_9:109697831-109697864:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	464.6974792480469	2	464.29731	926.580068	-0.58636	-0.00027224	0.40993	0.00019033	-0.17643	-8.1914E-05	464.29744632516224	73.922	0.50888	74.66	74.398	74.907	0.73752					16	9	2	0	0	0	0.57209	1	28080	28080		46.021	0	1	1169900			41841	12317	30743	30991	40760	40760					0.1138411897103424
QTLLMFQNLS	10	Unmodified	_QTLLMFQNLS_					0	0	0		ENST00000544944.6_1_19:45543120-45543186:+|nuORF	ENST00000544944.6_1_19:45543120-45543186:+|nuORF	ENST00000544944.6_1_19:45543120-45543186:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	398.9403381347656	3	398.877758	1193.61144	-0.054942	-2.1915E-05	-2.2617	-0.00090214	-2.3166	-0.00092406	399.2117707568225	51.587	0.71183	51.587	51.27	51.982	0					30	13	4	0	0	0	0.93733	1	18344	18344		1.4551	0.24029	1	2972700			41842	13319	30744	30992	40761	40761					0.022383239428108936
QTLLQSLGE	9	Unmodified	_QTLLQSLGE_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	A375_MHC_IP_R1	1	495.1820983886719	2	494.769114	987.523675	-0.49585	-0.00024533	1.3612	0.00067348	0.86536	0.00042815	494.76955720648925	28.158	0.75534	28.158	27.836	28.592	0					19	14	3	0	0	0	0.22528	1	8697	8697		36.127	1.195	1	3460300			41843	2444	30745	30993	40762	40762					0.029414463437205995
QTLLYFNGY	9	Unmodified	_QTLLYFNGY_					0	0	0		ENST00000488562.1_1_4:186854410-186854506:-|nuORF	ENST00000488562.1_1_4:186854410-186854506:-|nuORF	ENST00000488562.1_1_4:186854410-186854506:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	560.1090087890625	2	559.779482	1117.54441	-0.72618	-0.0004065	2.2143	0.0012395	1.4882	0.00083304	559.7812336134759	90.95	0.71111	90.95	90.437	91.148	0					21	13	2	0	0	0	0.39388	1	33478	33478		25.399	0	1	1030400			41844	12617	30746	30994	40763	40763					-0.009659632766215509
QTLNLPNEW	9	Unmodified	_QTLNLPNEW_					0	0	0		ENST00000503731.5_1_8:15480623-15480662:+|nuORF	ENST00000503731.5_1_8:15480623-15480662:+|nuORF	ENST00000503731.5_1_8:15480623-15480662:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	558.2001342773438	2	557.780013	1113.54547	-0.59996	-0.00033464	1.1501	0.00064148	0.55011	0.00030684	558.2824518460143	101.01	0.46259	101.78	101.44	101.91	0.76428					12	8	2	0	0	0	0.040308	2	38291	38291;38304		68.081	33.679	1	1048100			41845	12809	30747	30995	40764;40765	40764					-0.006757489077244827
QTLNNIKQF	9	Unmodified	_QTLNNIKQF_					0	0	0		nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-2|DDX1;DDX1|p.N389Rfs*14|1|0.04|ENSG00000079785|chr2:15618228-15618231|CAAT/-|frameshift_variant	nc|ENSG00000079785|Q92499-3|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	MULTI-SECPEP	A375_MHC_IP_R2	2	553.702880859375	2	553.303655	1104.59276	-0.66926	-0.0003703	-0.3769	-0.00020854	-1.0462	-0.00057884	553.3035243004541	44.209	0.4055	44.979	44.732	45.138	0.76909					12	7	2	0	0	0	0.053904	1	16506	16506		65.235	27.261	1	2283600			41846	1702	30748	30996	40766	40766					0.04464530363270569
QTLQRSLAKY	10	Unmodified	_QTLQRSLAKY_					0	0	0		ENSG00000158106|ENST00000289013|RHPN1;ENST00000522335.5_1_8:144462155-144464818:+|nuORF	ENSG00000158106|ENST00000289013|RHPN1	ENSG00000158106|ENST00000289013|RHPN1	MULTI-SECPEP	A375_MHC_IP_R1	1	604.7432861328125	2	604.343312	1206.67207	-0.43934	-0.00026551	-0.29174	-0.00017631	-0.73108	-0.00044182	604.3431201836662	31.25	0.30377	31.25	31.009	31.312	0					7	5	2	0	0	0	0.93194	1	9913	9913		9.3831	2.66	1	1728100			41847	6286	30749	30997	40767	40767					0.07700177317428825
QTLRFLGLY	9	Unmodified	_QTLRFLGLY_					0	0	0		ENST00000496641.1_1_7:140710217-140710433:-|nuORF;ENSG00000090263|ENST00000324787|MRPS33	ENST00000496641.1_1_7:140710217-140710433:-|nuORF	ENST00000496641.1_1_7:140710217-140710433:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	556.2186279296875	2	555.818941	1109.62333	-0.52939	-0.00029424	0.31273	0.00017382	-0.21666	-0.00012042	555.8190275877091	104.27	0.66165	104.27	103.93	104.59	0					20	12	3	0	0	0	0.011364	1	38308	38308		129.77	58.639	1	2658800			41848	1947	30750	30998	40768	40768					0.0729030874831551
QTLRFLGLY	9	Unmodified	_QTLRFLGLY_					0	0	0		ENST00000496641.1_1_7:140710217-140710433:-|nuORF;ENSG00000090263|ENST00000324787|MRPS33	ENST00000496641.1_1_7:140710217-140710433:-|nuORF	ENST00000496641.1_1_7:140710217-140710433:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	556.2183227539062	2	555.818941	1109.62333	-0.74999	-0.00041686	-0.29182	-0.0001622	-1.0418	-0.00057906	555.8185983638698	103.4	0.50912	104.17	103.84	104.35	0.76428					14	9	2	0	0	0	0.11887	1	39193	39193		69.105	29.148	1	1585100			41849	1947	30750	30998	40769	40769					0.0729030874831551
QTLSEDQRFR	10	Unmodified	_QTLSEDQRFR_					0	0	0		ENSG00000146070|ENST00000274793|PLA2G7	ENSG00000146070|ENST00000274793|PLA2G7	ENSG00000146070|ENST00000274793|PLA2G7	MULTI-SECPEP	A375_MHC_IP_R1	1	640.2196044921875	2	640.323108	1278.63166	-0.51764	-0.00033146	-2.3607	-0.0015116	-2.8783	-0.0018431	640.322091664394	62.74	0.51204	62.74	62.557	63.069	0					12	9	2	0	0	0	0.92227	1	22700	22700		1.0715	0	1	1263400			41850	5602	30751	30999	40770	40770					0.0034921092699278233
QTLSLKQLF	9	Unmodified	_QTLSLKQLF_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	A375_MHC_IP_R1	1	539.71875	2	539.318774	1076.623	-0.60451	-0.00032602	-0.090193	-4.8643E-05	-0.6947	-0.00037467	539.3186626522778	96.495	0.76244	96.495	96.223	96.985	0					26	14	3	0	0	0	0.001114	1	35473	35473		152.89	49.532	1	2988200			41851	2781	30752	31000	40771	40771					0.08774889028450161
QTLSLKQLF	9	Unmodified	_QTLSLKQLF_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	A375_MHC_IP_R2	2	539.7185668945312	2	539.318774	1076.623	-0.70937	-0.00038258	-0.14201	-7.6591E-05	-0.85139	-0.00045917	539.3185625433122	95.606	0.61063	96.356	96.093	96.703	0.75044					15	11	2	0	0	0	0.0037351	1	36307	36307		137.42	48.47	1	2854000			41852	2781	30752	31000	40772	40772					0.08774889028450161
QTLTDYDIRFY	11	Unmodified	_QTLTDYDIRFY_					0	0	0		ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	A375_MHC_IP_R2	2	718.4971923828125	2	717.848624	1433.6827	-0.69943	-0.00050209	0.43923	0.0003153	-0.2602	-0.00018679	717.8491609511527	95.923	0.40655	96.674	96.449	96.855	0.75045					13	7	2	0	0	0	0.72725	1	36354	36354		11.518	6.6209	1	972460			41853	2276	30753	31001	40773	40773					-0.01679884818827304
QTLWTWSRFHN	11	Unmodified	_QTLWTWSRFHN_					0	0	0		ENST00000256897.8_1_5:86708597-86708696:-|nuORF	ENST00000256897.8_1_5:86708597-86708696:-|nuORF	ENST00000256897.8_1_5:86708597-86708696:-|nuORF	MSMS	A375_MHC_IP_R1	1	492.4774169921875	3	492.57747	1474.71058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.37	1	46.37	45.87	46.87	0								0	0	0	0.16337	1	16266	16266		0.40827	0	1				41854	10244	30754	31002	40774	40774					-0.007785170480701709
QTLYKLYER	9	Unmodified	_QTLYKLYER_					0	0	0		ENSG00000065361|ENST00000267101|ERBB3;ERBB3|p.A805Gfs*22|1|0.26|ENSG00000065361|chr12:56097177-56097178|-/G|frameshift_variant;nc|ENSG00000065361|P21860-3|ERBB3;ERBB3|p.Y46D|1|0.23|ENSG00000065361|chr12:56083804-56083804|T/G|missense_variant;nc|ENSG00000065361|P21860-2|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF	ENSG00000065361|ENST00000267101|ERBB3	ENSG00000065361|ENST00000267101|ERBB3	MULTI-MSMS	A375_MHC_IP_R2	2	405.59979248046875	3	405.224034	1212.65027	-0.022012	-8.9198E-06	-0.42074	-0.00017049	-0.44275	-0.00017941	405.2238242210704	31.115	0.20417	31.833	31.719	31.923	0.71857					6	3	2	0	0	0	0.64945	1	10962	10962		11.518	0.61892	1	1582400			41855	1379	30755	31003	40775	40775					0.05245372568833773
QTLYRNFHFE	10	Unmodified	_QTLYRNFHFE_					0	0	0			REV__HOXB5|p.R221Q|1|0.38|ENSG00000120075|chr17:48592357-48592357|C/T|missense_variant	REV__HOXB5|p.R221Q|1|0.38|ENSG00000120075|chr17:48592357-48592357|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	677.83349609375	2	677.830569	1353.64658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.523	1	81.268	80.768	81.768	0.74474								0	0	0	0.15332	1	30570	30570		10.074	1.3285	1		+		41856	26755	30756	31004	40776	40776					-0.016092972050046228
QTNNGKTRTA	10	Unmodified	_QTNNGKTRTA_					0	0	0			REV__ENST00000486044.1_1_2:232602654-232645950:-|nuORF	REV__ENST00000486044.1_1_2:232602654-232645950:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	363.62542724609375	3	364.191504	1089.55268	0.053788	1.9589E-05	0.073855	2.6897E-05	0.12764	4.6486E-05	364.1915774294781	25.705	0.25421	25.705	25.562	25.816	0					8	4	2	0	0	0	0.92514	1	7494	7494		2.6312	0.54523	1	1668100	+		41857	25317	30757	31005	40777	40777					0.011489836927239594
QTNNGKTRTA	10	Unmodified	_QTNNGKTRTA_					0	0	0			REV__ENST00000486044.1_1_2:232602654-232645950:-|nuORF	REV__ENST00000486044.1_1_2:232602654-232645950:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	364.191504	1089.55268	-0.4509	-0.00016421	0.24741	9.0103E-05	-0.20349	-7.4111E-05	364.19151778425703	25	0.20398	25.644	25.465	25.668	0.64368	-0.03082	4.0806E-05	NaN	2.6312	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1349600	+		41858	25317	30757	31005							0.011489836927239594
QTNVYKNLIEG	11	Unmodified	_QTNVYKNLIEG_					0	0	0		ENSG00000176571|ENST00000518476|CNBD1	ENSG00000176571|ENST00000518476|CNBD1	ENSG00000176571|ENST00000518476|CNBD1	MULTI-MSMS	A375_MHC_IP_R1	1	640.2365112304688	2	639.838059	1277.66157	-0.67958	-0.00043482	-1.693	-0.0010832	-2.3725	-0.001518	639.8367744421151	19.834	0.35563	19.834	19.674	20.03	0					11	6	2	0	0	0	0.73378	1	5048	5048		5.2969	2.5617	1	1399000			41859	8025	30758	31006	40778	40778					0.03384149872317721
QTPNFVRGL	9	Unmodified	_QTPNFVRGL_					0	0	0		ENSG00000156928|ENST00000466681|MALSU1;ENST00000481564.1_1_7:23338971-23340720:+|nuORF	ENSG00000156928|ENST00000466681|MALSU1	ENSG00000156928|ENST00000466681|MALSU1	MULTI-SECPEP	A375_MHC_IP_R1	1	516.6847534179688	2	516.285266	1030.55598	-0.50435	-0.00026039	-0.77752	-0.00040142	-1.2819	-0.00066181	516.2847270354781	61.912	0.40942	61.912	61.636	62.046	0					19	7	3	0	0	0	0.10103	1	22337	22337		62.573	28.47	1	4087200			41860	6217	30759	31007	40779	40779					0.04192278537379934
QTPRRFSW	8	Unmodified	_QTPRRFSW_					0	0	0		CCDC8|p.G484R|1|0.46|ENSG00000169515|chr19:46411361-46411361|C/T|missense_variant	CCDC8|p.G484R|1|0.46|ENSG00000169515|chr19:46411361-46411361|C/T|missense_variant	CCDC8|p.G484R|1|0.46|ENSG00000169515|chr19:46411361-46411361|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	539.605712890625	2	539.283057	1076.55156	-0.68334	-0.00036851	3.0144	0.0016256	2.3311	0.0012571	539.2842284402342	40.206	0.71272	40.206	39.948	40.66	0					15	13	2	0	0	0	0.95423	1	13711	13711		4.3292	0	1	1437300			41861	318	30760	31008	40780	40780					0.016348141144590045
QTPSQTFLPL	10	Unmodified	_QTPSQTFLPL_					0	0	0			REV__ENST00000481194.1_1_7:45112713-45112986:+|nuORF	REV__ENST00000481194.1_1_7:45112713-45112986:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	565.6267700195312	2	566.305864	1130.59717	-0.60715	-0.00034383	0.53144	0.00030096	-0.075702	-4.287E-05	566.3056171823761	25.857	0.20113	25.857	25.765	25.966	0					5	3	2	0	0	0	0.90513	1	7637	7637		4.897	0	1	882030	+		41862	25256	30761	31009	40781	40781					0.03709994786186144
QTPYHETVY	9	Unmodified	_QTPYHETVY_					0	0	0		ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	MULTI-MSMS	A375_MHC_IP_R2	2	569.1658935546875	2	569.264196	1136.51384	-0.35017	-0.00019934	-1.1931	-0.00067921	-1.5433	-0.00087855	569.2640950891787	31.749	0.65936	32.485	32.198	32.857	0.73691					21	12	2	0	0	0	0.5339	1	11373	11373		18.135	2.2878	1	3321400			41863	2215	30762	31010	40782	40782					-0.048957416616758564
QTQAWCGP	8	Unmodified	_QTQAWCGP_					0	0	0			REV__ENST00000300289.9_1_15:44058198-44058988:+|nuORF	REV__ENST00000300289.9_1_15:44058198-44058988:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	890.3937377929688	1	890.382513	889.375237	-0.27264	-0.00024275	-3.5542	-0.0031646	-3.8268	-0.0034073	890.3812049538905	114.4	0.25372	115.11	114.88	115.14	0.70985					5	4	2	0	0	0	0.77643	1	43068	43068		7.9102	3.1541	1	1830100	+		41864	23412	30763	31011	40783	40783					-0.07387563110989959
QTQGDLSAY	9	Unmodified	_QTQGDLSAY_					0	0	0		nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;ENST00000373851.6_1_9:123874787-123912836:+|nuORF;nc|ENSG00000119397|Q7Z7A1-2|CNTRL	nc|ENSG00000119397|Q7Z7A1-5|CNTRL	nc|ENSG00000119397|Q7Z7A1-5|CNTRL	MULTI-SECPEP	A375_MHC_IP_R2	2	492.1267395019531	2	491.727446	981.44034	-0.93894	-0.0004617	-0.15179	-7.4639E-05	-1.0907	-0.00053634	491.7272971913048	33.473	0.45758	34.225	33.992	34.45	0.75225					12	8	2	0	0	0	0.53748	1	12011	12011		24.021	2.2739	1	2167600			41865	3588	30764	31012	40784	40784					-0.051122901041367186
QTQRKLLQH	9	Unmodified	_QTQRKLLQH_					0	0	0		ZFPM2|p.E377K|1|0.28|ENSG00000169946|chr8:105801211-105801211|G/A|missense_variant	ZFPM2|p.E377K|1|0.28|ENSG00000169946|chr8:105801211-105801211|G/A|missense_variant	ZFPM2|p.E377K|1|0.28|ENSG00000169946|chr8:105801211-105801211|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	384.5964660644531	3	384.55964	1150.65709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.679	1	49.679	49.179	50.179	0								0	0	0	0.15486	1	17575	17575		3.8763	1.97	1				41866	30200	30765	31013	40785	40785					0.08778730240078403
QTQVAVAQV	9	Unmodified	_QTQVAVAQV_					0	0	0		ENSG00000198929|ENST00000361897|NOS1AP;nc|ENSG00000198929|O75052-3|NOS1AP	ENSG00000198929|ENST00000361897|NOS1AP	ENSG00000198929|ENST00000361897|NOS1AP	MULTI-MSMS	A375_MHC_IP_R1	1	472.6640930175781	2	472.263999	942.513445	-0.42586	-0.00020112	1.0745	0.00050744	0.64862	0.00030632	472.2642563999506	61.661	1.1749	61.661	60.973	62.148	0					40	22	3	0	0	0	0.0097266	1	22205	22205		111.29	4.1	1	21575000			41867	9374	30766	31014	40786	40786					0.03988883409135724
QTQVAVAQV	9	Unmodified	_QTQVAVAQV_					0	0	0		ENSG00000198929|ENST00000361897|NOS1AP;nc|ENSG00000198929|O75052-3|NOS1AP	ENSG00000198929|ENST00000361897|NOS1AP	ENSG00000198929|ENST00000361897|NOS1AP	MULTI-MSMS	A375_MHC_IP_R2	2	472.664306640625	2	472.263999	942.513445	-0.87617	-0.00041379	0.50431	0.00023817	-0.37187	-0.00017562	472.2642852931475	60.898	0.8082	61.643	61.364	62.172	0.74503					34	15	3	0	0	0	0.0097266	1	23029	23029		111.29	0	1	21475000			41868	9374	30766	31014	40787	40787					0.03988883409135724
QTQVQRAHLL	10	Unmodified	_QTQVQRAHLL_					0	0	0			REV__ENSG00000122035|ENST00000241463|RASL11A	REV__ENSG00000122035|ENST00000241463|RASL11A	MULTI-MSMS	A375_MHC_IP_R1	1	398.9217834472656	3	398.563161	1192.66765	-0.17205	-6.8572E-05	-0.8726	-0.00034779	-1.0446	-0.00041636	398.56275906717076	23.1	0.96177	23.1	22.673	23.635	0					31	18	2	0	0	0	0.70565	1	6129	6129		9.7643	4.241	1	20843000	+		41869	18185	30767	31015	40788	40788					0.07902712894519937
QTRDISPKGYD	11	Unmodified	_QTRDISPKGYD_					0	0	0		nc|ENSG00000186487|Q9UL68-4|MYT1L;ENSG00000186487|ENST00000647738|MYT1L	nc|ENSG00000186487|Q9UL68-4|MYT1L	nc|ENSG00000186487|Q9UL68-4|MYT1L	MULTI-MSMS	A375_MHC_IP_R1	1	640.7169799804688	2	640.317491	1278.62043	-0.938	-0.00060062	0.38634	0.00024738	-0.55166	-0.00035324	640.3176628827014	67.424	0.66416	67.424	66.99	67.654	0					23	12	3	0	0	0	0.73189	1	24399	24399		7.1017	0	1	6072900			41870	8752	30768	31016	40789	40789					-0.007736111671420076
QTRDKEKEFV	10	Unmodified	_QTRDKEKEFV_					0	0	0			REV__nc|ENSG00000165458|O15357-2|INPPL1	REV__nc|ENSG00000165458|O15357-2|INPPL1	MULTI-SECPEP	A375_MHC_IP_R1	1	427.6260681152344	3	427.226215	1278.65681	-0.39249	-0.00016768	0.077476	3.31E-05	-0.31501	-0.00013458	427.2261883734846	25.892	0.45602	25.892	25.765	26.221	0					21	8	3	0	0	0	0.89369	1	7665	7665		16.275	0	1	8186900	+		41871	20583	30769	31017	40790	40790					0.028632657295474928
QTRETWVRRRR	11	Unmodified	_QTRETWVRRRR_					0	0	0			REV__ENST00000374763.6_2_1:21923469-21929399:-|nuORF	REV__ENST00000374763.6_2_1:21923469-21929399:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	515.6939086914062	3	515.294068	1542.86037	-0.65669	-0.00033839	0.21474	0.00011065	-0.44195	-0.00022773	515.29419998075	134.53	0.81561	134.67	134.18	135	0.13901					21	15	2	0	0	0	0.73891	1	52951	52951		0.40827	0.31342	1	2274400	+		41872	24114	30770	31018	40791	40791					0.11065848014368385
QTRETWVRRRR	11	Unmodified	_QTRETWVRRRR_					0	0	0			REV__ENST00000374763.6_2_1:21923469-21929399:-|nuORF	REV__ENST00000374763.6_2_1:21923469-21929399:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	515.6934814453125	3	515.294068	1542.86037	-0.63199	-0.00032566	-0.010395	-5.3564E-06	-0.64238	-0.00033102	515.294035611287	135.3	0.86557	135.44	135.05	135.92	0.13901					38	16	3	0	0	0	0.73891	1	53203	53203		0.40827	0.32491	1	3606600	+		41873	24114	30770	31018	40792	40792					0.11065848014368385
QTRETWVRRRR	11	Unmodified	_QTRETWVRRRR_					0	0	0			REV__ENST00000374763.6_2_1:21923469-21929399:-|nuORF	REV__ENST00000374763.6_2_1:21923469-21929399:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	515.294068	1542.86037	-0.81072	-0.00041776	0.086139	4.4387E-05	-0.72458	-0.00037337	515.2940652518238	135.36	1.1204	135.36	134.88	136	0	-0.041077	7.6552E-05	NaN	0.40827	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4329800	+		41874	24114	30770	31018							0.11065848014368385
QTRETWVRRRR	11	Unmodified	_QTRETWVRRRR_					0	0	0			REV__ENST00000374763.6_2_1:21923469-21929399:-|nuORF	REV__ENST00000374763.6_2_1:21923469-21929399:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	515.294068	1542.86037	-0.63199	-0.00032566	-0.010395	-5.3564E-06	-0.64238	-0.00033102	515.294035611287	135.3	0.86557	135.44	135.05	135.92	0.13901	0.041077	-7.2679E-05	NaN	0.40827	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3606600	+		41875	24114	30770	31018							0.11065848014368385
QTRFPLDYY	9	Unmodified	_QTRFPLDYY_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MSMS	A375_MHC_IP_R1	1	602.1959838867188	2	601.795663	1201.57677	-0.18035	-0.00010853	-1.2902	-0.00077646	-1.4706	-0.00088499	601.7962900224645	78.657	0.65624	78.657	78.454	79.111	0					19	12	2	0	0	0	0.21241	1	28750	28750		47.749	20.865	1	1598000			41876	5409	30771	31019	40793	40793					-0.01595175873626431
QTRLSQQTE	9	Unmodified	_QTRLSQQTE_					0	0	0		ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF;nc|ENSG00000131051|Q14498-3|RBM39;nc|ENSG00000131051|Q14498-2|RBM39;ENSG00000131051|ENST00000253363|RBM39;ENST00000397254.2_1_X:43889279-43890164:+|nuORF;ENST00000471635.5_1_20:34297104-34301010:-|nuORF	ENST00000492779.5_1_20:34292405-34320086:-|nuORF	ENST00000492779.5_1_20:34292405-34320086:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1091.310546875	1	1090.54873	1089.54145	0.040625	4.4304E-05	-1.9922	-0.0021726	-1.9516	-0.0021283	1090.5463203318914	129.07	0.2545	129.31	129.16	129.42	0.23946					6	4	2	0	0	0	0.64136	1	50680	50680		12.241	1.4411	1	6490300			41877	4304	30772	31020	40794	40794					0.00026161598566432076
QTRLSYLKF	9	Unmodified	_QTRLSYLKF_					0	0	0			REV__ENST00000590278.1_1_19:33696051-33698478:+|nuORF	REV__ENST00000590278.1_1_19:33696051-33698478:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	386.2885437011719	3	385.888874	1154.64479	-0.16603	-6.4069E-05	0.14893	5.747E-05	-0.0171	-6.5985E-06	385.8889648434324	39.673	1.5743	40.448	40.118	41.692	0.77451					82	30	5	0	0	0	0.41879	1	14831	14831		23.79	5.4167	1	380770000	+		41878	18571	30773	31021	40795	40795					0.07365693777023807
QTRQPAPIPVD	11	Unmodified	_QTRQPAPIPVD_					0	0	0		ENST00000371273.3_1_1:55279632-55307494:+|nuORF;ENST00000358193.7_1_1:55280606-55307494:+|nuORF	ENST00000371273.3_1_1:55279632-55307494:+|nuORF	ENST00000371273.3_1_1:55279632-55307494:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	612.2340087890625	2	611.332944	1220.65134	-0.31576	-0.00019303	-1.1665	-0.00071314	-1.4823	-0.00090617	611.331730521939	145.08	0.23041	145.1	144.98	145.21	0.021408					13	8	2	0	0	0	0.73378	1	56639	56639		5.2969	1.7004	1	567690			41879	10995	30774	31022	40796	40796					0.049835869377375275
QTRSESLSDV	10	Unmodified	_QTRSESLSDV_					0	0	0			REV__nc|ENSG00000168913|Q6UWT2-2|ENHO	REV__nc|ENSG00000168913|Q6UWT2-2|ENHO	MULTI-MSMS	A375_MHC_IP_R2	2	560.674560546875	2	561.275292	1120.53603	-0.97926	-0.00054963	-0.78059	-0.00043812	-1.7598	-0.00098776	561.2748955415674	52.13	0.55685	52.882	52.677	53.234	0.75225					17	10	2	0	0	0	0.67512	1	19627	19627		15.248	15.248	1	3180800	+		41880	27348	30775	31023	40797	40797					-0.019415619839264764
QTRSIQSRF	9	Unmodified	_QTRSIQSRF_					0	0	0		ENSG00000137817|ENST00000569795|PARP6;ENST00000566991.5_1_15:72533798-72535059:-|nuORF	ENSG00000137817|ENST00000569795|PARP6	ENSG00000137817|ENST00000569795|PARP6	MSMS	A375_MHC_IP_R1	1	374.9278869628906	3	374.871995	1121.59415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.467	1	27.467	26.967	27.967	0								0	0	0	0.15468	1	8336	8336		9.544	1.5986	1				41881	4920	30776	31024	40798	40798					0.03822164452049037
QTRVLAEML	9	Unmodified	_QTRVLAEML_					0	0	0		nc|ENSG00000136883|Q96FN5|KIF12;ENSG00000136883|ENST00000640217|KIF12	nc|ENSG00000136883|Q96FN5|KIF12	nc|ENSG00000136883|Q96FN5|KIF12	MULTI-MSMS	A375_MHC_IP_R2	2	354.5986633300781	3	354.198831	1059.57467	-0.51368	-0.00018194	0.22198	7.8624E-05	-0.2917	-0.00010332	354.1987654751794	19.45	0.70859	20.053	19.683	20.392	0.60308					26	13	3	0	0	0	0.31062	1	5985	5985		29.841	4.8496	1	3267000			41882	4837	30777	31025	40799	40799					0.04726072116909563
QTSAAVREHEA	11	Unmodified	_QTSAAVREHEA_					0	0	0			REV__ENST00000534709.1_1_11:117152603-117155864:+|nuORF	REV__ENST00000534709.1_1_11:117152603-117155864:+|nuORF	MSMS	A375_MHC_IP_R1	1	599.7792358398438	2	599.794183	1197.57381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.98	1	134.98	134.48	135.48	0								0	0	0	0.16258	1	52051	52051		5.2969	0.39987	1		+		41883	20744	30778	31026	40800	40800					-0.01707050998447812
QTSGAYVLNKV	11	Unmodified	_QTSGAYVLNKV_					0	0	0		ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	MULTI-MSMS	A375_MHC_IP_R1	1	590.1243286132812	2	590.322045	1178.62954	-0.32878	-0.00019409	-0.21796	-0.00012867	-0.54674	-0.00032275	590.3220950925951	73.646	1.3685	73.646	73.031	74.4	0					110	26	7	0	0	0	0.13504	2	26816	26816;26910		63.961	10.557	1	79092000			41884	1967	30779	31027	40801;40802	40801					0.04736782189161204
QTSGAYVLNKV	11	Unmodified	_QTSGAYVLNKV_					0	0	0		ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	MULTI-MSMS	A375_MHC_IP_R2	2	590.3688354492188	2	590.322045	1178.62954	-0.57994	-0.00034235	0.094699	5.5903E-05	-0.48524	-0.00028645	590.3221867319467	72.975	1.3244	73.711	73.226	74.551	0.7354					106	25	7	0	0	0	0.28899	2	27753	27753;27835		47.594	8.9796	1	105340000			41885	1967	30779	31027	40803;40804	40803					0.04736782189161204
QTSGAYVLNKV	11	Unmodified	_QTSGAYVLNKV_					0	0	0		ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	590.322045	1178.62954	-0.57994	-0.00034235	0.094699	5.5903E-05	-0.48524	-0.00028645	590.3221867319467	72.975	1.3244	73.711	73.226	74.551	0.7354	0.032349	0.0001791	NaN	63.961	106	25	7	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105340000			41886	1967	30779	31027							0.04736782189161204
QTSGERHWY	9	Unmodified	_QTSGERHWY_					0	0	0			REV__nc|ENSG00000139746|Q5T8P6-5|RBM26	REV__nc|ENSG00000139746|Q5T8P6-5|RBM26	MSMS	A375_MHC_IP_R1	1	582.322509765625	2	582.265062	1162.51557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.05	1	106.05	105.55	106.55	0								0	0	0	0.15486	1	38932	38932		10.824	0.75	1		+		41887	19180	30780	31028	40805	40805					-0.0591868785306815
QTSGSLLHY	9	Unmodified	_QTSGSLLHY_					0	0	0		ENSG00000139574|ENST00000267017|NPFF;nc|ENSG00000139574|O15130-2|NPFF;ENST00000448979.3_1_12:53900562-53901037:-|nuORF	ENSG00000139574|ENST00000267017|NPFF	ENSG00000139574|ENST00000267017|NPFF	MULTI-SECPEP	A375_MHC_IP_R2	2	503.6713562011719	2	503.253631	1004.49271	-0.66678	-0.00033556	0.24926	0.00012544	-0.41752	-0.00021012	503.2541916450137	31.958	0.65936	32.695	32.198	32.857	0.73691					20	12	3	0	0	0	0.65246	1	11128	11128		10.824	2.9138	1	1808300			41888	5087	30781	31029	40806	40806					-0.009357069705401955
QTSKATFRLK	10	Unmodified	_QTSKATFRLK_					0	0	0			REV__ENST00000421407.1_1:144593821-144594396:+|nuORF	REV__ENST00000421407.1_1:144593821-144594396:+|nuORF	MSMS	A375_MHC_IP_R1	1	393.94879150390625	3	393.899662	1178.67716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.773	1	55.773	55.273	56.273	0								0	0	0	0.15397	1	19959	19959		7.9454	2.162	1		+		41889	24591	30782	31030	40807	40807					0.09496481180030969
QTSKRSFPLT	10	Unmodified	_QTSKRSFPLT_					0	0	0			REV__ENST00000585623.5_2_19:37825584-37837327:+|nuORF	REV__ENST00000585623.5_2_19:37825584-37837327:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	583.2223510742188	2	582.822212	1163.62987	0.25449	0.00014832	-0.41706	-0.00024307	-0.16258	-9.4754E-05	582.8219416349107	49.21	0.96327	49.21	48.882	49.845	0					51	18	4	0	0	0	0.68214	1	17342	17342		18.373	0	1	46002000	+		41890	23591	30783	31031	40808	40808					0.054602019090452814
QTSLDLDFRRC	11	Unmodified	_QTSLDLDFRRC_					0	0	0		ENST00000553189.5_1_12:29689066-29935873:-|nuORF	ENST00000553189.5_1_12:29689066-29935873:-|nuORF	ENST00000553189.5_1_12:29689066-29935873:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	452.64251708984375	3	451.890838	1352.65068	-0.57657	-0.00026055	-0.69299	-0.00031316	-1.2696	-0.0005737	451.89047483108186	57.652	0.50888	58.401	58.12	58.629	0.74894					12	9	2	0	0	0	0.99732	1	21766	21766		2.2527	1.8445	1	1827300			41891	13400	30784	31032	40809	40809					-0.01153575773605553
QTSLVLTQV	9	Unmodified	_QTSLVLTQV_					0	0	0		ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1501770019531	2	494.787307	987.560061	-0.4564	-0.00022582	-0.46483	-0.00022999	-0.92124	-0.00045582	494.78694568426346	80.036	0.96323	80.78	80.453	81.416	0.74474					32	18	3	0	0	0	0.087712	1	30388	30388		57.722	9.9733	1	9358900			41892	8176	30785	31033	40810	40810					0.065783232404101
QTSPEEFTD	9	Unmodified	_QTSPEEFTD_					0	0	0		ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-MSMS	A375_MHC_IP_R1	1	527.6221923828125	2	527.222194	1052.42983	-0.64372	-0.00033938	0.031107	1.64E-05	-0.61261	-0.00032298	527.2223504405147	39.98	0.76367	39.98	39.694	40.458	0					30	14	3	0	0	0	0.36834	1	13708	13708		26.268	2.2476	1	7004800			41893	3498	30786	31034	40811	40811					-0.09428317549236453
QTSREIFNF	9	Unmodified	_QTSREIFNF_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	A375_MHC_IP_R1	1	570.6292724609375	2	571.285463	1140.55637	-0.18206	-0.00010401	-0.81846	-0.00046757	-1.0005	-0.00057158	571.2853817976958	72.756	0.60851	72.756	72.423	73.031	0					21	11	3	0	0	0	0.46045	1	26477	26477		29.082	16.039	1	1864100			41894	9866	30787	31035	40812	40812					-0.008283465334443463
QTSTWKLASV	10	Unmodified	_QTSTWKLASV_					0	0	0		ENSG00000155858|ENST00000286307|LSM11	ENSG00000155858|ENST00000286307|LSM11	ENSG00000155858|ENST00000286307|LSM11	MULTI-SECPEP	A375_MHC_IP_R2	2	561.1847534179688	2	560.803488	1119.59242	-0.56417	-0.00031639	0.38877	0.00021802	-0.1754	-9.8367E-05	560.8034582725384	88.288	0.50542	89.02	88.774	89.279	0.7318					16	9	2	0	0	0	0.56504	1	33616	33616		27.629	2.2295	1	3945000			41895	6161	30788	31036	40813	40813					0.03741110643431966
QTSVGNVYHI	10	Unmodified	_QTSVGNVYHI_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MSMS	A375_MHC_IP_R2	2	559.6851806640625	2	559.285463	1116.55637	-0.70939	-0.00039675	0.062213	3.4795E-05	-0.64718	-0.00036196	559.2852000074059	30.706	0.60499	31.425	31.114	31.719	0.71857					16	11	2	0	0	0	0.44858	1	10846	10846		31.268	2.1868	1	2976800	+		41896	20388	30789	31037	40814	40814					0.002756534665650179
QTSVGNVYHI	10	Unmodified	_QTSVGNVYHI_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MATCH	A375_MHC_IP_R1	1		2	559.285463	1116.55637	-0.52012	-0.0002909	0.26423	0.00014778	-0.2559	-0.00014312	559.2856905562778	31.364	0.60842	31.364	31.059	31.667	0	-0.030511	6.5946E-05	NaN	31.268	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3066900	+		41897	20388	30789	31037							0.002756534665650179
QTSVGNVYHI	10	Unmodified	_QTSVGNVYHI_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	559.285463	1116.55637	-0.70939	-0.00039675	0.062213	3.4795E-05	-0.64718	-0.00036196	559.2852000074059	30.706	0.60499	31.425	31.114	31.719	0.71857	0.030511	-0.00016002	NaN	31.268	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2976800	+		41898	20388	30789	31037							0.002756534665650179
QTTWLFSFPF	10	Unmodified	_QTTWLFSFPF_					0	0	0		ENSG00000170790|ENST00000641461|OR10A2;ENSG00000166363|ENST00000299454|OR10A5	ENSG00000170790|ENST00000641461|OR10A2	ENSG00000170790|ENST00000641461|OR10A2	MULTI-SECPEP	A375_MHC_IP_R1	1	425.6064453125	3	425.213246	1272.61791	-0.21558	-9.1667E-05	-1.8317	-0.00077886	-2.0473	-0.00087053	425.2122869164546	40.97	0.30081	40.97	40.762	41.063	0					8	5	2	0	0	0	0.85074	1	14080	14080		14.218	0	1	1392200			41899	7540	30790	31038	40815	40815					-0.007494148341493201
QTVEFFGYSL	10	Unmodified	_QTVEFFGYSL_					0	0	0		ENSG00000100926|ENST00000261789|TM9SF1	ENSG00000100926|ENST00000261789|TM9SF1	ENSG00000100926|ENST00000261789|TM9SF1	MULTI-SECPEP	A375_MHC_IP_R2	2	595.6464233398438	2	595.790047	1189.56554	-0.89122	-0.00053098	1.3966	0.00083207	0.50537	0.00030109	595.7899793934996	58.531	1.625	59.28	58.323	59.948	0.74894					46	31	2	0	0	0	0.8125	1	22108	22108		13.042	0	1	3311400			41900	2233	30791	31039	40816	40816					-0.021659979677679075
QTVFTQMIKK	10	Unmodified	_QTVFTQMIKK_					0	0	0			REV__ENST00000503561.7_1_5:50057675-50130728:+|nuORF	REV__ENST00000503561.7_1_5:50057675-50130728:+|nuORF	MSMS	A375_MHC_IP_R2	2	612.7423095703125	2	612.344466	1222.67438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.706	1	63.448	62.948	63.948	0.74263								0	0	0	0.15265	1	23770	23770		12.241	0	1		+		41901	25517	30792	31040	40817	40817					0.07194889730840259
QTVHINENF	9	Unmodified	_QTVHINENF_					0	0	0		ENSG00000100603|ENST00000261531|SNW1;ENST00000553565.1_1_14:78197307-78203348:-|nuORF	ENSG00000100603|ENST00000261531|SNW1	ENSG00000100603|ENST00000261531|SNW1	MULTI-SECPEP	A375_MHC_IP_R1	1	551.669677734375	2	551.269813	1100.52507	-0.22261	-0.00012272	-0.16987	-9.3646E-05	-0.39249	-0.00021637	551.2696939566753	45.409	0.4534	45.409	45.183	45.636	0					14	8	2	0	0	0	0.13208	1	15911	15911		41.956	27.117	1	5024400			41902	2201	30793	31041	40818	40818					-0.021169195675156516
QTVHINENF	9	Unmodified	_QTVHINENF_					0	0	0		ENSG00000100603|ENST00000261531|SNW1;ENST00000553565.1_1_14:78197307-78203348:-|nuORF	ENSG00000100603|ENST00000261531|SNW1	ENSG00000100603|ENST00000261531|SNW1	MULTI-SECPEP	A375_MHC_IP_R2	2	551.6691284179688	2	551.269813	1100.52507	-0.85587	-0.00047182	0.21163	0.00011666	-0.64425	-0.00035515	551.2696535394646	44.58	0.50807	45.349	45.086	45.594	0.7691					19	9	3	0	0	0	0.05217	1	16657	16657		89.401	57.095	1	4674800			41903	2201	30793	31041	40819	40819					-0.021169195675156516
QTVHTVEKTY	10	Unmodified	_QTVHTVEKTY_					0	0	0		ZNF790|p.K223E|1|0.14|ENSG00000197863|chr19:36819677-36819677|T/C|missense_variant	ZNF790|p.K223E|1|0.14|ENSG00000197863|chr19:36819677-36819677|T/C|missense_variant	ZNF790|p.K223E|1|0.14|ENSG00000197863|chr19:36819677-36819677|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	604.2123413085938	2	603.311677	1204.6088	-0.74997	-0.00045247	0.14242	8.5924E-05	-0.60755	-0.00036654	603.3119600323856	49.49	0.40281	50.247	49.995	50.398	0.75737					13	7	2	0	0	0	0.70651	1	18616	18616		9.3831	0.63772	1	2406600			41904	30244	30794	31042	40820	40820					0.01468191809522068
QTVHTVEKTY	10	Unmodified	_QTVHTVEKTY_					0	0	0		ZNF790|p.K223E|1|0.14|ENSG00000197863|chr19:36819677-36819677|T/C|missense_variant	ZNF790|p.K223E|1|0.14|ENSG00000197863|chr19:36819677-36819677|T/C|missense_variant	ZNF790|p.K223E|1|0.14|ENSG00000197863|chr19:36819677-36819677|T/C|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	603.311677	1204.6088	-0.31752	-0.00019157	0.0033223	2.0044E-06	-0.3142	-0.00018956	603.3115289575748	50.197	0.35824	50.197	49.998	50.357	0	-0.024901	-0.00011201	NaN	9.3831	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2551800			41905	30244	30794	31042							0.01468191809522068
QTVIYMNY	8	Unmodified	_QTVIYMNY_					0	0	0			REV__ENST00000375290.6_3_9:98215758-98232201:-|nuORF	REV__ENST00000375290.6_3_9:98215758-98232201:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	515.6444702148438	2	516.24696	1030.47937	-0.4591	-0.00023701	2.7963	0.0014436	2.3372	0.0012066	516.2471931427056	34.952	0.86333	34.952	34.557	35.421	0					29	16	4	0	0	0	0.8824	1	11450	11450		16.942	3.4344	1	6670500	+		41906	21932	30795	31043	40821	40821					-0.03465281074136328
QTVLLRGV	8	Unmodified	_QTVLLRGV_					0	0	0		tr|U7SLR4|U7SLR4_FUSNUL-lysine2,3-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01867PE=3SV=1	tr|U7SLR4|U7SLR4_FUSNUL-lysine2,3-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01867PE=3SV=1	tr|U7SLR4|U7SLR4_FUSNUL-lysine2,3-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01867PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	443.6789855957031	2	443.279452	884.544351	-0.76691	-0.00033996	0.38042	0.00016863	-0.3865	-0.00017133	443.2795070425214	56.622	0.7122	57.372	57.051	57.763	0.75015					27	13	3	0	0	0	0.81376	1	21409	21409		19.257	0	1	5209700			41907	29510	30796	31044	40822	40822					0.09746081514037996
QTVSPAEKW	9	Unmodified	_QTVSPAEKW_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1;ENST00000568912.1_1_15:34786974-34787073:+|nuORF	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	MULTI-MSMS	A375_MHC_IP_R1	1	523.71337890625	2	523.269281	1044.52401	-0.78176	-0.00040907	0.043083	2.2544E-05	-0.73868	-0.00038653	523.269243412341	36.619	1.0631	36.619	36.033	37.096	0					48	20	4	0	0	0	0.010402	1	12222	12222		177.58	117.5	1	42991000			41908	1614	30797	31045	40823	40823					0.0035286606357658457
QTVSPAEKW	9	Unmodified	_QTVSPAEKW_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1;ENST00000568912.1_1_15:34786974-34787073:+|nuORF	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	MULTI-SECPEP	A375_MHC_IP_R2	2	522.9796142578125	2	523.269281	1044.52401	-0.72153	-0.00037755	0.041254	2.1587E-05	-0.68028	-0.00035597	523.2692776012764	35.845	0.96548	36.608	35.98	36.946	0.76338					51	18	4	0	0	0	0.0027118	1	13017	13017		177.58	116.22	1	46047000			41909	1614	30797	31045	40824	40824					0.0035286606357658457
QTVSYRAL	8	Unmodified	_QTVSYRAL_					0	0	0			REV__nc|ENSG00000099834|Q9HBB8-2|CDHR5	REV__nc|ENSG00000099834|Q9HBB8-2|CDHR5	MULTI-SECPEP	A375_MHC_IP_R2	2	468.6217956542969	2	469.258717	936.50288	-0.65559	-0.00030764	-0.46811	-0.00021966	-1.1237	-0.00052731	469.25838500468114	44.514	0.35458	45.283	45.086	45.441	0.7691					11	6	2	0	0	0	0.97021	1	16650	16650		6.7232	0	1	1288500	+		41910	17027	30798	31046	40825	40825					0.03208900754691513
QTVTPSGQVTW	11	Unmodified	_QTVTPSGQVTW_					0	0	0		nc|ENSG00000172845|Q02447-4|SP3;nc|ENSG00000172845|Q02447-3|SP3;nc|ENSG00000172845|Q02447-5|SP3;nc|ENSG00000172845|Q02447-6|SP3;nc|ENSG00000172845|Q02447-2|SP3;ENSG00000172845|ENST00000310015|SP3	nc|ENSG00000172845|Q02447-4|SP3	nc|ENSG00000172845|Q02447-4|SP3	MULTI-SECPEP	A375_MHC_IP_R1	1	602.6534423828125	2	602.303852	1202.59315	-0.26884	-0.00016192	1.9499	0.0011744	1.681	0.0010125	602.305299621	70.899	0.56435	70.899	70.698	71.262	0					14	10	2	0	0	0	0.041527	1	25751	25751		73.196	33.239	1	1405000			41911	7738	30799	31047	40826	40826					-4.0947075376607245E-05
QTVVPQNTY	9	Unmodified	_QTVVPQNTY_					0	0	0		nc|ENSG00000162714|Q96IT1-2|ZNF496;ENSG00000162714|ENST00000682384|ZNF496	nc|ENSG00000162714|Q96IT1-2|ZNF496	nc|ENSG00000162714|Q96IT1-2|ZNF496	MULTI-SECPEP	A375_MHC_IP_R2	2	525.6661376953125	2	525.266739	1048.51892	-0.64212	-0.00033729	-2.2909	-0.0012033	-2.933	-0.0015406	525.2666870738384	35.893	0.56073	36.656	36.333	36.894	0.76338					23	10	3	0	0	0	0.46045	1	13049	13049		17.113	0	1	4289200			41912	6580	30800	31048	40827	40827					-0.00339437799038933
QTVYIQLV	8	Unmodified	_QTVYIQLV_					0	0	0		nc|ENSG00000181282|Q8NH89|OR5AK3P	nc|ENSG00000181282|Q8NH89|OR5AK3P	nc|ENSG00000181282|Q8NH89|OR5AK3P	MULTI-SECPEP	A375_MHC_IP_R2	2	482.14508056640625	2	482.279118	962.543683	-0.37863	-0.00018261	-0.20451	-9.8631E-05	-0.58314	-0.00028124	482.27903333366623	112	0.66163	112.73	112.41	113.07	0.72458					25	12	3	0	0	0	0.73563	1	42327	42327		44.407	0	1	2004900			41913	14795	30801	31049	40828	40828					0.06091242074319325
QTWRRRWIWAK	11	Unmodified	_QTWRRRWIWAK_					0	0	0		ENST00000300086.4_1_16:75681724-75681847:+|nuORF	ENST00000300086.4_1_16:75681724-75681847:+|nuORF	ENST00000300086.4_1_16:75681724-75681847:+|nuORF	MSMS	A375_MHC_IP_R2	2	793.646240234375	2	793.944393	1585.87423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.91	1	132.1	131.6	132.6	0.18953								0	0	0	0.16339	1	51891	51891		1.0715	0.76443	1				41914	10535	30802	31050	40829	40829					0.10473125513499326
QTWTYLRQYRE	11	Unmodified	_QTWTYLRQYRE_					0	0	0			REV__ENSG00000174945|ENST00000683327|AMZ1	REV__ENSG00000174945|ENST00000683327|AMZ1	MULTI-MSMS	A375_MHC_IP_R2	2	772.4872436523438	2	772.386239	1542.75793	-0.85623	-0.00066134	-0.39893	-0.00030813	-1.2552	-0.00096947	772.8861919069363	118.77	0.1524	119.38	119.25	119.4	0.60909					4	2	2	0	0	0	0.73284	1	45130	45130		6.1918	3.1966	1	13641000	+		41915	21315	30803	31051	40830	40830					0.008257174322579885
QTWVTEFIL	9	Unmodified	_QTWVTEFIL_					0	0	0		ENSG00000221836|ENST00000641693|OR2A5	ENSG00000221836|ENST00000641693|OR2A5	ENSG00000221836|ENST00000641693|OR2A5	MULTI-SECPEP	A375_MHC_IP_R1	1	378.9486389160156	3	379.53773	1135.59136	0.26802	0.00010172	-2.3142	-0.00087834	-2.0462	-0.00077662	379.53661532056486	27.48	0.25266	27.48	27.381	27.634	0					5	4	2	0	0	0	0.71541	1	8346	8346		4.5289	0	1	739520			41916	9665	30804	31052	40831	40831					0.028988962745188473
QTWWPRRWSSL	11	Unmodified	_QTWWPRRWSSL_					0	0	0		ENST00000599373.5_1_19:19030550-19032753:+|nuORF	ENST00000599373.5_1_19:19030550-19032753:+|nuORF	ENST00000599373.5_1_19:19030550-19032753:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	502.1766662597656	3	501.593232	1501.75787	-0.72511	-0.00036371	0.51796	0.0002598	-0.20715	-0.00010391	501.92719765341286	39.267	0.35604	40.042	39.863	40.219	0.77451					8	6	2	0	0	0	0.99916	1	14500	14500		1.1098	0	1	1135200			41917	13856	30805	31053	40832	40832					0.027057622229449407
QTYGGMSAHHL	11	Unmodified	_QTYGGMSAHHL_					0	0	0			REV__ENSG00000104321|ENST00000262209|TRPA1	REV__ENSG00000104321|ENST00000262209|TRPA1	MULTI-SECPEP	A375_MHC_IP_R1	1	401.9776611328125	3	401.185474	1200.53459	-0.012256	-4.9169E-06	4.3398	0.0017411	4.3276	0.0017362	401.1872561809593	21.886	0.55761	21.886	21.505	22.062	0					14	10	2	0	0	0	0.99676	1	5708	5708		0.073264	0	1	727070	+		41918	17315	30806	31054	40833	40833					-0.0576547455364107
QTYKNRAGF	9	Unmodified	_QTYKNRAGF_					0	0	0		ENST00000529624.5_3_15:28877823-28916776:+|nuORF;ENST00000528584.5_1_15:28900509-28916776:+|nuORF;ENST00000530420.5_1_15:28900570-28916776:+|nuORF	ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENST00000529624.5_3_15:28877823-28916776:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	543.1300048828125	2	542.780348	1083.54614	-1.2137	-0.00065877	-0.34385	-0.00018664	-1.5576	-0.00084541	542.7799901604052	26.373	0.55816	27.033	26.805	27.363	0.65992					20	10	3	0	0	0	0.63327	1	8911	8911		13.042	13.042	1	9223800			41919	13133	30807	31055	40834	40834					0.0077109053199819755
QTYREWHDPA	10	Unmodified	_QTYREWHDPA_					0	0	0			REV__ENST00000438435.6_1_1:181006220-181024398:+|nuORF	REV__ENST00000438435.6_1_1:181006220-181024398:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	435.60125732421875	3	434.866909	1301.5789	-0.44746	-0.00019459	0.19378	8.427E-05	-0.25368	-0.00011031	434.8667799593431	41.325	0.40453	42.099	41.946	42.35	0.77451					19	7	3	0	0	0	0.91932	1	15356	15356		7.9454	0	1	3616800	+		41920	19822	30808	31056	40835	40835					-0.059827471357948525
QTYSKVIDEG	10	Unmodified	_QTYSKVIDEG_					0	0	0			REV__ENSG00000179399|ENST00000377067|GPC5	REV__ENSG00000179399|ENST00000377067|GPC5	MULTI-SECPEP	A375_MHC_IP_R2	2	570.68212890625	2	570.282586	1138.55062	-0.40967	-0.00023363	0.013877	7.9141E-06	-0.39579	-0.00022571	570.2825124685457	72.582	0.45773	73.317	73.124	73.581	0.73541					17	8	3	0	0	0	0.86608	1	27572	27572		20.415	13.125	1	1834800	+		41921	21560	30809	31057	40836	40836					-0.013114898357798666
QTYYRIFTW	9	Unmodified	_QTYYRIFTW_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-SECPEP	A375_MHC_IP_R2	2	639.71875	2	639.319306	1276.62406	-0.70942	-0.00045355	-1.4009	-0.00089564	-2.1103	-0.0013492	639.3187384096262	105.08	0.45834	105.85	105.67	106.12	0.76308					13	8	2	0	0	0	0.5212	1	39799	39799		26.268	12.653	1	1258200			41922	1649	30810	31058	40837	40837					-0.003188966026300477
QTYYRIFTW	9	Unmodified	_QTYYRIFTW_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MATCH	A375_MHC_IP_R1	1		2	639.319306	1276.62406	-0.5104	-0.00032631	0.8086	0.00051695	0.29821	0.00019065	639.3192053244119	105.91	0.35585	105.91	105.76	106.11	0	0.032113	0.00086844	NaN	38.176	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	828680			41923	1649	30810	31058							-0.003188966026300477
QVAAVGSTYGR	11	Unmodified	_QVAAVGSTYGR_					0	0	0			REV__nc|ENSG00000162572|P51172-1|SCNN1D	REV__nc|ENSG00000162572|P51172-1|SCNN1D	MULTI-MSMS	A375_MHC_IP_R2	2	370.5964660644531	3	370.196367	1107.56727	0.1374	5.0866E-05	0.008798	3.257E-06	0.1462	5.4123E-05	370.1964141257597	30.052	0.50621	30.766	30.603	31.109	0.7134					15	9	2	0	0	0	0.73494	1	10601	10601		1.9275	0.18523	1	2774400	+		41924	20268	30811	31059	40838	40838					0.01779055840847832
QVADNGDD	8	Unmodified	_QVADNGDD_					0	0	0		ENST00000490362.1_1_2:217498183-217525611:+|nuORF;ENSG00000115457|ENST00000233809|IGFBP2	ENST00000490362.1_1_2:217498183-217525611:+|nuORF	ENST00000490362.1_1_2:217498183-217525611:+|nuORF	MSMS	A375_MHC_IP_R2	2	417.1671142578125	2	417.167222	832.31989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.84	1	143.87	143.37	144.37	0.024414								0	0	0	0.16876	1	56204	56204		2.5775	1.7838	1				41925	3310	30812	31060	40839	40839					-0.10297698097758712
QVAEQFSRAF	10	Unmodified	_QVAEQFSRAF_					0	0	0		ENSG00000160191|ENST00000291539|PDE9A;nc|ENSG00000160191|O76083-16|PDE9A;nc|ENSG00000160191|O76083-15|PDE9A;nc|ENSG00000160191|O76083-14|PDE9A;nc|ENSG00000160191|O76083-2|PDE9A;nc|ENSG00000160191|O76083-13|PDE9A;nc|ENSG00000160191|O76083-8|PDE9A;nc|ENSG00000160191|O76083-6|PDE9A;ENST00000470987.5_1_21:44117526-44195400:+|nuORF;nc|ENSG00000160191|O76083-3|PDE9A;ENST00000467162.5_1_21:44106337-44153535:+|nuORF;ENST00000495343.5_1_21:44151932-44153535:+|nuORF	ENSG00000160191|ENST00000291539|PDE9A	ENSG00000160191|ENST00000291539|PDE9A	MULTI-SECPEP	A375_MHC_IP_R1	1	592.4885864257812	2	591.798737	1181.58292	-0.4642	-0.00027471	-3.9411	-0.0023323	-4.4053	-0.002607	592.2988532470591	80.434	1.4252	80.434	79.828	81.253	0					44	27	2	0	0	0	0.92227	1	29282	29282		8.7454	0.58988	1	3068900			41926	6402	30813	31061	40840	40840					-0.0006065764209779445
QVAGRLKED	9	Unmodified	_QVAGRLKED_					0	0	0		RRP9|p.L352Pfs*89|1|0.28|ENSG00000114767|chr3:51934756-51934756|A/-|frameshift_variant;ENSG00000114767|ENST00000232888|RRP9	RRP9|p.L352Pfs*89|1|0.28|ENSG00000114767|chr3:51934756-51934756|A/-|frameshift_variant	RRP9|p.L352Pfs*89|1|0.28|ENSG00000114767|chr3:51934756-51934756|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9801940917969	2	508.28018	1014.54581	-1.0312	-0.00052416	-1.405	-0.00071415	-2.4363	-0.0012383	508.7806673253393	37.558	0.30766	38.329	38.171	38.479	0.7709					8	5	2	0	0	0	0.71341	1	13808	13808		13.042	0.80181	1	978700			41927	3243	30814	31062	40841	40841					0.03911670812135526
QVAIVYNIT	9	Unmodified	_QVAIVYNIT_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	MULTI-SECPEP	A375_MHC_IP_R1	1	510.1559143066406	2	510.78985	1019.56515	0.017051	8.7093E-06	-0.18723	-9.5637E-05	-0.17018	-8.6927E-05	510.7895289353585	48.802	0.55638	48.802	48.577	49.134	0					13	8	2	0	0	0	0.47368	1	17148	17148		26.884	9.9414	1	1483000			41928	6794	30815	31063	40842	40842					0.0561462710302294
QVAPPKVQ	8	Unmodified	_QVAPPKVQ_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-MSMS	A375_MHC_IP_R1	1	434.1582336425781	2	433.758352	865.502152	-0.20583	-8.9279E-05	0.048929	2.1223E-05	-0.1569	-6.8055E-05	433.75832368748127	46.37	0.96026	46.37	45.992	46.952	0					45	18	3	0	0	0	0.69583	1	16217	16217		36.044	0	1	22030000	+		41929	18742	30816	31064	40843	40843					0.06402106105656458
QVAPPKVQ	8	Unmodified	_QVAPPKVQ_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-SECPEP	A375_MHC_IP_R2	2	433.09783935546875	2	433.758352	865.502152	-0.24359	-0.00010566	0.0077124	3.3453E-06	-0.23587	-0.00010231	433.758322898589	45.758	1.0083	46.523	46.15	47.159	0.76519					43	19	3	0	0	0	0.8211	1	17153	17153		38.151	0	1	20242000	+		41930	18742	30816	31064	40844	40844					0.06402106105656458
QVAPPKVQS	9	Unmodified	_QVAPPKVQS_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-MSMS	A375_MHC_IP_R1	1	477.6741027832031	2	477.274367	952.53418	-0.24651	-0.00011765	0.15419	7.3592E-05	-0.092317	-4.406E-05	477.27440282344594	45.511	0.65582	45.511	45.234	45.89	0					36	12	4	0	0	0	0.040308	2	15895	15895;15976		68.081	11.904	1	16586000	+		41931	18742	30817	31065	40845;40846	40845					0.05601473788806288
QVAPPKVQS	9	Unmodified	_QVAPPKVQS_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-MSMS	A375_MHC_IP_R2	2	477.6921691894531	2	477.274367	952.53418	-0.66101	-0.00031548	0.11414	5.4476E-05	-0.54687	-0.00026101	477.274424489807	44.903	0.71215	45.672	45.34	46.052	0.7691					35	13	3	0	0	0	0.040308	2	16732	16710;16732		68.081	16.839	1	14039000	+		41932	18742	30817	31065	40847;40848	40848					0.05601473788806288
QVAPPKVQS	9	Unmodified	_QVAPPKVQS_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	477.274367	952.53418	-0.24651	-0.00011765	0.15419	7.3592E-05	-0.092317	-4.406E-05	477.27440282344594	45.511	0.65582	45.511	45.234	45.89	0	-0.080465	1.1482E-05	NaN	68.081	36	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16586000	+		41933	18742	30817	31065							0.05601473788806288
QVAPPKVQS	9	Unmodified	_QVAPPKVQS_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	477.274367	952.53418	-0.66101	-0.00031548	0.11414	5.4476E-05	-0.54687	-0.00026101	477.274424489807	44.903	0.71215	45.672	45.34	46.052	0.7691	0.080465	-2.675E-05	NaN	68.081	35	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14039000	+		41934	18742	30817	31065							0.05601473788806288
QVAPPKVQSPG	11	Unmodified	_QVAPPKVQSPG_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-SECPEP	A375_MHC_IP_R2	2	554.7112426757812	2	554.31148	1106.60841	-1.2476	-0.00069154	-0.2744	-0.00015211	-1.522	-0.00084365	554.3112857526663	52.603	0.70814	53.355	53.083	53.791	0.75225					30	13	3	0	0	0	0.76456	1	19807	19807		47.594	28.337	1	8086400	+		41935	18742	30818	31066	40849	40849					0.059368168803075605
QVCAIIERV	9	Unmodified	_QVCAIIERV_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	A375_MHC_IP_R1	1	516.1887817382812	2	515.789327	1029.5641	-0.76274	-0.00039341	-0.059329	-3.0601E-05	-0.82207	-0.00042401	515.7893401421967	66.673	0.91885	66.673	66.326	67.245	0					28	17	3	0	0	0	0.074562	1	24139	24139		55.235	31.214	1	1616900			41936	8551	30819	31067	40850	40850					0.050500894624974535
QVCAIIERV	9	Unmodified	_QVCAIIERV_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-SECPEP	A375_MHC_IP_R2	2	516.1885986328125	2	515.789327	1029.5641	-0.95132	-0.00049068	-0.94683	-0.00048836	-1.8981	-0.00097904	515.7892589255698	65.745	0.91568	66.483	66.069	66.985	0.73811					30	17	2	0	0	0	0.16237	1	24943	24943		55.235	27.606	1	2905500			41937	8551	30819	31067	40851	40851					0.050500894624974535
QVCRGNACTFA	11	Unmodified	_QVCRGNACTFA_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-MSMS	A375_MHC_IP_R1	1	585.1907958984375	2	585.26315	1168.51175	-0.33645	-0.00019691	0.31914	0.00018678	-0.017316	-1.0134E-05	585.2634275662458	76.931	0.61348	76.931	76.673	77.286	0					26	11	3	0	0	0	0.72949	1	27958	27958		9.3831	2.66	1	5565800	+		41938	16777	30820	31068	40852	40852					-0.06576816942788355
QVCWYLQAF	9	Unmodified	_QVCWYLQAF_					0	0	0			REV__ENSG00000066777|ENST00000262215|ARFGEF1	REV__ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-SECPEP	A375_MHC_IP_R1	1	579.6759643554688	2	579.276052	1156.53755	-0.30801	-0.00017842	0.75856	0.00043941	0.45055	0.00026099	579.2763568189735	90.04	0.5566	90.04	89.83	90.387	0					15	10	2	0	0	0	0.60012	1	33116	33116		18.135	0	1	1604200	+		41939	16524	30821	31069	40853	40853					-0.03445599428846435
QVCYDLERI	9	Unmodified	_QVCYDLERI_					0	0	0		ENSG00000101752|ENST00000261537|MIB1	ENSG00000101752|ENST00000261537|MIB1	ENSG00000101752|ENST00000261537|MIB1	MULTI-MSMS	A375_MHC_IP_R2	2	569.6981201171875	2	569.781699	1137.54884	-0.58331	-0.00033236	-1.2453	-0.00070956	-1.8286	-0.0010419	569.7809808283356	24.103	0.25369	24.747	24.653	24.907	0.64368					5	4	2	0	0	0	0.34064	1	7860	7860		27.629	4.4804	1	848830			41940	2321	30822	31070	40854	40854					-0.014428221253638185
QVCYDLERI	9	Unmodified	_QVCYDLERI_					0	0	0		ENSG00000101752|ENST00000261537|MIB1	ENSG00000101752|ENST00000261537|MIB1	ENSG00000101752|ENST00000261537|MIB1	MULTI-MATCH	A375_MHC_IP_R1	1		2	569.781699	1137.54884	-0.44012	-0.00025077	-0.56495	-0.0003219	-1.0051	-0.00057267	569.7817085279588	24.557	0.25031	24.557	24.397	24.647	0	-0.094897	0.00069942	NaN	27.629	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1696100			41941	2321	30822	31070							-0.014428221253638185
QVDAPPDKQF	10	Unmodified	_QVDAPPDKQF_					0	0	0			REV__ENSG00000158125|ENST00000379416|XDH	REV__ENSG00000158125|ENST00000379416|XDH	MSMS	A375_MHC_IP_R2	2	382.12908935546875	3	382.192623	1143.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.659	1	45.428	44.928	45.928	0.7691								0	0	0	0.15245	1	16674	16674		12.873	4.7171	1		+		41942	20063	30823	31071	40855	40855					-0.00999766253312373
QVDAQGEGKY	10	Unmodified	_QVDAQGEGKY_					0	0	0		tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1	tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1	tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	548.1585083007812	2	547.759278	1093.504	-0.67567	-0.0003701	-0.30946	-0.00016951	-0.98513	-0.00053961	547.7589535512259	80.373	0.55631	80.373	80.136	80.693	0					22	10	3	0	0	0	0.69306	1	29331	29331		13.906	0	1	4146900			41943	29630	30824	31072	40856	40856					-0.03900929667042874
QVDAQGEGKY	10	Unmodified	_QVDAQGEGKY_					0	0	0		tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1	tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1	tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	547.759278	1093.504	-0.70758	-0.00038758	-0.67131	-0.00036772	-1.3789	-0.0007553	547.7583665370805	79.704	0.66089	80.449	79.997	80.657	0.74473	0.037873	-0.00032527	NaN	13.906	32	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3787800			41944	29630	30824	31072							-0.03900929667042874
QVDAQLLTV	9	Unmodified	_QVDAQLLTV_					0	0	0		ENSG00000103549|ENST00000324685|RNF40;nc|ENSG00000103549|O75150-4|RNF40	ENSG00000103549|ENST00000324685|RNF40	ENSG00000103549|ENST00000324685|RNF40	MULTI-SECPEP	A375_MHC_IP_R2	2	494.17938232421875	2	493.779482	985.544411	-0.4024	-0.0001987	0.29849	0.00014739	-0.10391	-5.131E-05	493.7795431926872	91.353	0.81182	92.087	91.666	92.478	0.73451					23	15	2	0	0	0	0.083712	1	34740	34740		74.929	13.572	1	1858900			41945	2462	30825	31073	40857	40857					0.051060367233731085
QVDAYFSPI	9	Unmodified	_QVDAYFSPI_					0	0	0		ENSG00000239900|ENST00000623063|ADSL	ENSG00000239900|ENST00000623063|ADSL	ENSG00000239900|ENST00000623063|ADSL	MULTI-MSMS	A375_MHC_IP_R2	2	521.7234497070312	2	520.258382	1038.50221	-0.92183	-0.00047959	-0.34821	-0.00018116	-1.27	-0.00066075	520.2582453984775	71.809	3.1998	72.543	72.061	75.261	0.73421					205	62	7	0	0	0	0.6898	1	27510	27510		7.9102	0	1	705380000			41946	9769	30826	31074	40858	40858					-0.015499386850024166
QVDDLEQKY	9	Unmodified	_QVDDLEQKY_					0	0	0		ENSG00000163312|ENST00000295488|HELQ;nc|ENSG00000163312|Q8TDG4-4|HELQ;nc|ENSG00000163312|Q8TDG4-2|HELQ	ENSG00000163312|ENST00000295488|HELQ	ENSG00000163312|ENST00000295488|HELQ	MULTI-SECPEP	A375_MHC_IP_R1	1	568.673583984375	2	569.274761	1136.53497	-0.064718	-3.6842E-05	0.51311	0.0002921	0.4484	0.00025526	569.2754700447331	49.896	1.2229	49.896	49.134	50.357	0					36	23	2	0	0	0	0.67483	1	17837	17837		20.454	6.5476	1	1338500			41947	6646	30827	31075	40859	40859					-0.027837763527941206
QVDDLEQKY	9	Unmodified	_QVDDLEQKY_					0	0	0		ENSG00000163312|ENST00000295488|HELQ;nc|ENSG00000163312|Q8TDG4-4|HELQ;nc|ENSG00000163312|Q8TDG4-2|HELQ	ENSG00000163312|ENST00000295488|HELQ	ENSG00000163312|ENST00000295488|HELQ	MULTI-MATCH	A375_MHC_IP_R2	2		2	569.274761	1136.53497	-0.46763	-0.00026621	0.19146	0.000109	-0.27617	-0.00015721	569.2757194445395	49.011	0.7636	49.769	49.282	50.046	0.75737	-0.063594	-0.00023605	NaN	20.454	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1319600			41948	6646	30827	31075							-0.027837763527941206
QVDEEDEQP	9	Unmodified	_QVDEEDEQP_					0	0	0			REV__ENSG00000125734|ENST00000264080|GPR108	REV__ENSG00000125734|ENST00000264080|GPR108	MSMS	A375_MHC_IP_R2	2	544.6487426757812	2	544.722558	1087.43056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.893	1	89.624	89.124	90.124	0.7318								0	0	0	0.15486	1	33831	33831		11.64	1.4569	1		+		41949	18358	30828	31076	40860	40860					-0.10965522900187352
QVDEKRKKRDI	11	Unmodified	_QVDEKRKKRDI_					0	0	0		nc|ENSG00000103266|Q9UNE7-2|STUB1;ENSG00000103266|ENST00000219548|STUB1	nc|ENSG00000103266|Q9UNE7-2|STUB1	nc|ENSG00000103266|Q9UNE7-2|STUB1	MULTI-MSMS	A375_MHC_IP_R2	2	708.3092651367188	2	707.909882	1413.80521	-0.54288	-0.00038431	0.015771	1.1165E-05	-0.52711	-0.00037314	707.909831159805	143.1	0.55545	143.14	142.74	143.29	0.030731					23	10	3	0	0	0	0.73897	1	55863	55863		0.35063	0	1	2196900			41950	2439	30829	31077	40861	40861					0.11485996703254386
QVDERKDY	8	Unmodified	_QVDERKDY_					0	0	0			REV__ENSG00000182858|ENST00000330817|ALG12	REV__ENSG00000182858|ENST00000330817|ALG12	MSMS	A375_MHC_IP_R1	1	526.674072265625	2	526.753995	1051.49344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.913	1	47.913	47.413	48.413	0								0	0	0	0.16876	1	16873	16873		36.044	0	1		+		41951	21711	30830	31078	40862	40862					-0.030249123214844076
QVDERKDY	8	Unmodified	_QVDERKDY_					0	0	0			REV__ENSG00000182858|ENST00000330817|ALG12	REV__ENSG00000182858|ENST00000330817|ALG12	MSMS	A375_MHC_IP_R2	2	526.674560546875	2	526.753995	1051.49344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.154	1	47.916	47.416	48.416	0.76128								0	0	0	0.16876	1	17675	17675		36.044	0	1		+		41952	21711	30830	31078	40863	40863					-0.030249123214844076
QVDFIWFQRY	10	Unmodified	_QVDFIWFQRY_					0	0	0			REV__nc|ENSG00000135218|P16671-2|CD36	REV__nc|ENSG00000135218|P16671-2|CD36	MSMS	A375_MHC_IP_R1	1	701.35009765625	2	701.351137	1400.68772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.764	1	77.764	77.264	78.264	0								0	0	0	0.1552	1	28377	28377		3.9444	0	1		+		41953	18829	30831	31079	40864	40864					0.0034046383445911488
QVDKMASLY	9	Oxidation (M)	_QVDKM(Oxidation (M))ASLY_		QVDKM(1)ASLY		QVDKM(96)ASLY	0	0	1		ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1629638671875	2	535.762975	1069.5114	-0.93526	-0.00050108	0.072574	3.8883E-05	-0.86269	-0.0004622	535.7631582938438	30.75	0.8105	30.75	30.553	31.363	0					27	15	2	0	0	0	0.028087	1	9795	9795		96.367	28.286	1	6336100			41954	1616	30832	31080	40865	40865		50			-0.020579133909905067
QVDKMASLY	9	Unmodified	_QVDKMASLY_					0	0	0		ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	MULTI-MSMS	A375_MHC_IP_R2	2	528.1651000976562	2	527.765517	1053.51648	-0.32803	-0.00017312	-0.28041	-0.00014799	-0.60844	-0.00032111	527.7653687333643	47.548	1.4202	48.309	47.462	48.883	0.76128					50	27	2	0	0	0	0.015701	1	17812	17812		88.954	21.61	1	6911000			41955	1616	30832	31081	40866	40866					-0.008136095283589384
QVDLNQQQY	9	Unmodified	_QVDLNQQQY_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-SECPEP	A375_MHC_IP_R1	1	568.6723022460938	2	568.272552	1134.53055	0.193	0.00010968	-0.48316	-0.00027456	-0.29015	-0.00016489	568.2721938381441	44.92	0.86385	44.92	44.42	45.284	0					43	16	3	0	0	0	0.41434	1	15632	15632		32.786	13.529	1	6838000			41956	3193	30833	31082	40867	40867					-0.031332407757190595
QVDLNQQQY	9	Unmodified	_QVDLNQQQY_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-SECPEP	A375_MHC_IP_R2	2	568.6724853515625	2	568.272552	1134.53055	-0.26432	-0.0001502	-0.13239	-7.5235E-05	-0.39671	-0.00022544	568.2723526283341	44.34	1.0109	45.109	44.43	45.441	0.7691					45	19	3	0	0	0	0.010998	1	16429	16429		126.57	72.733	1	6211800			41957	3193	30833	31082	40868	40868					-0.031332407757190595
QVDLSVHAY	9	Unmodified	_QVDLSVHAY_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	MULTI-MSMS	A375_MHC_IP_R1	1	516.6610717773438	2	516.261456	1030.50836	-0.66226	-0.0003419	0.33045	0.0001706	-0.33181	-0.0001713	516.2614577255827	53.171	1.0647	53.171	52.592	53.656	0					56	20	5	0	0	0	0.0022313	1	18947	18947		141.83	73.746	1	10813000			41958	6733	30834	31083	40869	40869					-0.005674204534898308
QVDMARTAY	9	Unmodified	_QVDMARTAY_					0	0	0		ENST00000467738.1_1_3:58490953-58512473:-|nuORF;ENSG00000168306|ENST00000302819|ACOX2	ENST00000467738.1_1_3:58490953-58512473:-|nuORF	ENST00000467738.1_1_3:58490953-58512473:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	528.186767578125	2	527.752941	1053.49133	-0.70706	-0.00037315	1.0448	0.00055138	0.3377	0.00017822	528.2563846985881	90.926	1.6229	90.926	89.981	91.604	0					49	31	2	0	0	0	0.53367	1	33269	33269		18.146	2.2992	1	1303100			41959	7288	30835	31084	40870	40870					-0.03327664330936386
QVDMARTAY	9	Unmodified	_QVDMARTAY_					0	0	0		ENST00000467738.1_1_3:58490953-58512473:-|nuORF;ENSG00000168306|ENST00000302819|ACOX2	ENST00000467738.1_1_3:58490953-58512473:-|nuORF	ENST00000467738.1_1_3:58490953-58512473:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	527.648681640625	2	527.752941	1053.49133	-0.48672	-0.00025687	-0.32363	-0.0001708	-0.81035	-0.00042767	527.751414159415	91.934	0.60695	91.934	91.452	92.059	0					15	11	2	0	0	0	0.60917	1	33604	33604		25.399	18.11	1	776020			41960	7288	30835	31084	40871	40871					-0.03327664330936386
QVDMETPCLIV	11	Unmodified	_QVDMETPCLIV_					0	0	0			REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2;REV__nc|ENSG00000107147|Q5JUK3-4|KCNT1	REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2	MULTI-MSMS	A375_MHC_IP_R2	2	624.7026977539062	2	624.304149	1246.59375	-0.93456	-0.00058345	-1.0798	-0.00067415	-2.0144	-0.0012576	624.3033872390888	35.849	0.45879	36.612	36.435	36.894	0.76338					14	8	3	0	0	0	0.73283	1	13048	13048		6.2058	0.47393	1	3730900	+		41961	20291;17475	30836	31085	40872	40872					-0.01968759374358342
QVDMETPCLIV	11	Unmodified	_QVDMETPCLIV_					0	0	0			REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2;REV__nc|ENSG00000107147|Q5JUK3-4|KCNT1	REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2	MULTI-SECPEP	A375_MHC_IP_R2	2	623.7691040039062	2	624.304149	1246.59375	-0.93456	-0.00058345	-1.0798	-0.00067415	-2.0144	-0.0012576	624.3033872390888	35.849	0.45879	36.612	36.435	36.894	0.76338					14	8	3	0	0	0	0.99109	1	13053	13053		10.074	0.6908	1	3730900	+		41962	20291;17475	30836	31085	40873	40873					-0.01968759374358342
QVDMETPCLIV	11	Unmodified	_QVDMETPCLIV_					0	0	0			REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2;REV__nc|ENSG00000107147|Q5JUK3-4|KCNT1	REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	624.304149	1246.59375	-0.80878	-0.00050493	-0.95913	-0.00059879	-1.7679	-0.0011037	624.3032613859795	36.637	0.40601	36.637	36.389	36.795	0	0.01209	0.00012452	NaN	6.2058	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2093000	+		41963	20291;17475	30836	31085							-0.01968759374358342
QVDPLSALKY	10	Unmodified	_QVDPLSALKY_					0	0	0		ENST00000498778.5_1_7:131151082-131172419:+|nuORF;ENST00000497746.1_1_7:131149041-131155790:+|nuORF;nc|ENSG00000128585|Q9UL63-2|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF;ENSG00000128585|ENST00000352689|MKLN1	ENST00000498778.5_1_7:131151082-131172419:+|nuORF	ENST00000498778.5_1_7:131151082-131172419:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	567.8245239257812	2	567.313689	1132.61282	-0.44499	-0.00025245	-0.12257	-6.9534E-05	-0.56756	-0.00032199	567.3136298773426	87.21	1.4237	87.21	86.679	88.103	0					83	27	5	0	0	0	0.0025034	2	31906	31906;32134		97.741	55.785	1	131840000			41964	4148	30837	31086	40874;40875	40874					0.05182281303223135
QVDPLSALKY	10	Unmodified	_QVDPLSALKY_					0	0	0		ENST00000498778.5_1_7:131151082-131172419:+|nuORF;ENST00000497746.1_1_7:131149041-131155790:+|nuORF;nc|ENSG00000128585|Q9UL63-2|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF;ENSG00000128585|ENST00000352689|MKLN1	ENST00000498778.5_1_7:131151082-131172419:+|nuORF	ENST00000498778.5_1_7:131151082-131172419:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	567.9348754882812	2	567.313689	1132.61282	-0.23167	-0.00013143	-0.13934	-7.9051E-05	-0.37101	-0.00021048	567.3136464878429	86.498	1.2218	87.231	86.693	87.914	0.733					82	23	7	0	0	0	0.011522	1	33005	33005		117.84	66.208	1	129290000			41965	4148	30837	31086	40876	40876					0.05182281303223135
QVDPNYAYAY	10	Unmodified	_QVDPNYAYAY_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000425026.1_1_Y:10028050-10028227:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	602.6693115234375	2	602.269478	1202.5244	-0.49201	-0.00029633	-1.0716	-0.00064538	-1.5636	-0.00094171	602.2693751066174	65.591	0.86647	65.591	65.105	65.972	0					37	16	3	0	0	0	0.024081	1	23735	23735		89.401	37.771	1	6070400			41966	876	30838	31087	40877	40877					-0.0687575900722095
QVDPNYAYAY	10	Unmodified	_QVDPNYAYAY_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000425026.1_1_Y:10028050-10028227:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	602.669677734375	2	602.269478	1202.5244	-0.52586	-0.00031671	-1.2523	-0.00075422	-1.7782	-0.0010709	602.2692521669577	65.045	0.71044	65.783	65.308	66.018	0.73811					29	13	3	0	0	0	0.037053	2	24637	24584;24637		79.596	41.421	1	6277300			41967	876	30838	31087	40878;40879	40879					-0.0687575900722095
QVDQDGWIDP	10	Unmodified	_QVDQDGWIDP_					0	0	0			REV__ENST00000246949.9_1_16:3704910-3705863:+|nuORF	REV__ENST00000246949.9_1_16:3704910-3705863:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	586.1487426757812	2	586.76456	1171.51457	-0.44205	-0.00025938	0.0497	2.9162E-05	-0.39235	-0.00023022	586.7644481201246	93.277	0.55968	94.016	93.797	94.356	0.73901					19	10	2	0	0	0	0.77204	1	35417	35417		16.149	2.2431	1	950780	+		41968	23116	30839	31088	40880	40880					-0.06432947012626755
QVDRSDLNY	9	Unmodified	_QVDRSDLNY_					0	0	0			REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2	REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-MSMS	A375_MHC_IP_R1	1	555.6641845703125	2	555.264727	1108.5149	-0.80437	-0.00044664	1.3147	0.00073002	0.51036	0.00028339	555.2650206650591	41.189	0.75798	41.189	40.712	41.47	0					23	14	2	0	0	0	0.12771	1	14233	14233		45.7	1.8413	1	3655500	+		41969	17464	30840	31089	40881	40881					-0.03501527292769424
QVDRSDLNY	9	Unmodified	_QVDRSDLNY_					0	0	0			REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2	REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-MSMS	A375_MHC_IP_R2	2	555.6646728515625	2	555.264727	1108.5149	-0.87577	-0.00048628	2.2871	0.0012699	1.4113	0.00078366	555.2651745692092	40.498	0.81362	41.273	40.98	41.794	0.77451					24	11	3	0	0	0	0.12771	1	15003	15003		45.7	3.86	1	3779900	+		41970	17464	30840	31089	40882	40882					-0.03501527292769424
QVDSSSQVV	9	Unmodified	_QVDSSSQVV_					0	0	0			REV__nc|ENSG00000164944|Q69YN4-4|VIRMA	REV__nc|ENSG00000164944|Q69YN4-4|VIRMA	MSMS	A375_MHC_IP_R1	1	474.68707275390625	2	474.735271	947.45599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.935	1	78.935	78.435	79.435	0								0	0	0	0.14812	1	28811	28811		24.674	3.8027	1		+		41971	20532	30841	31090	40883	40883					-0.019840035870743122
QVDTEPPVM	9	Unmodified	_QVDTEPPVM_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	A375_MHC_IP_R2	2	508.67462158203125	2	508.241875	1014.4692	-0.96011	-0.00048797	0.35579	0.00018083	-0.60432	-0.00030714	508.24208142115003	50.06	0.45829	50.814	50.548	51.006	0.75406					15	8	2	0	0	0	0.53748	1	18890	18890		24.021	9.1823	1	3782500	+		41972	20029	30842	31091	40884	40884					-0.037458887993466305
QVEAMFIHL	9	Unmodified	_QVEAMFIHL_					0	0	0			REV__nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	REV__nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-MSMS	A375_MHC_IP_R2	2	545.2883911132812	2	544.283877	1086.5532	-0.71713	-0.00039032	-1.9729	-0.0010738	-2.69	-0.0014641	544.2845034339422	89.821	0.46322	90.553	90.287	90.751	0.7318					16	7	3	0	0	0	0.55818	1	34211	34211		16.942	2.3606	1	1559500	+		41973	16892	30843	31092	40885	40885					0.013386870882186486
QVEAMFIHL	9	Unmodified	_QVEAMFIHL_					0	0	0			REV__nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	REV__nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	544.283877	1086.5532	-0.71713	-0.00039032	-1.9729	-0.0010738	-2.69	-0.0014641	544.2845034339422	89.821	0.46322	90.553	90.287	90.751	0.7318	-0.055026	0.00062722	NaN	16.942	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1559500	+		41974	16892	30843	31092							0.013386870882186486
QVEDYPVDLYY	11	Unmodified	_QVEDYPVDLYY_					0	0	0		ENSG00000082781|ENST00000296181|ITGB5	ENSG00000082781|ENST00000296181|ITGB5	ENSG00000082781|ENST00000296181|ITGB5	MSMS	A375_MHC_IP_R2	2	702.721923828125	2	702.321908	1402.62926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.85	1	107.61	107.11	108.11	0.75977								0	0	0	0.1361	1	40377	40377		28.495	0	1				41975	1766	30844	31093	40886	40886					-0.055946823213162133
QVEEEEETI	9	Unmodified	_QVEEEEETI_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MSMS	A375_MHC_IP_R2	2	553.191650390625	2	553.248408	1104.48226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.266	1	85.006	84.506	85.506	0.73962								0	0	0	0.14767	1	32031	32031		25.399	3.6527	1		+		41976	21369	30845	31094	40887	40887					-0.06579779206253988
QVEERLSFY	9	Unmodified	_QVEERLSFY_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000462630.5_1_20:2637388-2638937:+|nuORF;ENST00000492135.5_1_20:2636822-2638937:+|nuORF;ENST00000490753.1_1_20:2637050-2637903:+|nuORF;ENST00000466447.5_1_20:2636822-2638033:+|nuORF;ENST00000471023.1_1_20:2637149-2637577:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-SECPEP	A375_MHC_IP_R1	1	586.1931762695312	2	585.793121	1169.57169	-0.26843	-0.00015724	0.61589	0.00036079	0.34746	0.00020354	585.7933139500213	64.077	0.5054	64.077	63.837	64.343	0					21	9	3	0	0	0	0.13093	1	23166	23166		67.838	25.999	1	2927100			41977	2285	30846	31095	40888	40888					-0.00631479736239271
QVEERLSFY	9	Unmodified	_QVEERLSFY_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000462630.5_1_20:2637388-2638937:+|nuORF;ENST00000492135.5_1_20:2636822-2638937:+|nuORF;ENST00000490753.1_1_20:2637050-2637903:+|nuORF;ENST00000466447.5_1_20:2636822-2638033:+|nuORF;ENST00000471023.1_1_20:2637149-2637577:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MATCH	A375_MHC_IP_R2	2		2	585.793121	1169.57169	-0.46342	-0.00027147	-0.39973	-0.00023416	-0.86315	-0.00050563	585.7928231093844	63.374	0.40583	64.114	63.835	64.241	0.74022	0.018223	-0.00071888	NaN	67.838	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2585700			41978	2285	30846	31095							-0.00631479736239271
QVEGKPSPW	9	Unmodified	_QVEGKPSPW_					0	0	0		nc|ENSG00000203965|A8K855-2|EFCAB7;ENSG00000203965|ENST00000371088|EFCAB7;ENST00000496956.1_1_1:63999833-64017523:+|nuORF	nc|ENSG00000203965|A8K855-2|EFCAB7	nc|ENSG00000203965|A8K855-2|EFCAB7	MULTI-MSMS	A375_MHC_IP_R1	1	514.2890625	2	514.263999	1026.51345	-0.6487	-0.0003336	-1.4756	-0.00075887	-2.1243	-0.0010925	514.2646924154533	80.837	0.45786	80.837	80.642	81.1	0					27	8	4	0	0	0	0.64136	1	29600	29600		12.241	1.4167	1	4850500			41979	9403	30847	31096	40889	40889					0.0012488340912568674
QVEINLKRYP	10	Unmodified	_QVEINLKRYP_					0	0	0		nc|ENSG00000033122|Q96NW7-2|LRRC7;nc|ENSG00000033122|Q96NW7|LRRC7;ENSG00000033122|ENST00000651989|LRRC7	nc|ENSG00000033122|Q96NW7-2|LRRC7	nc|ENSG00000033122|Q96NW7-2|LRRC7	MULTI-SECPEP	A375_MHC_IP_R1	1	420.9870300292969	3	420.575067	1258.70337	-0.0595	-2.5024E-05	0.68629	0.00028864	0.62679	0.00026361	420.57511917902457	36.97	0.86145	36.97	36.592	37.454	0					53	16	5	0	0	0	0.77204	1	12319	12319		14.218	9.5023	1	49268000			41980	1122	30848	31097	40890	40890					0.08436750351529554
QVEKFINNAS	10	Unmodified	_QVEKFINNAS_					0	0	0		ZNF28|p.S167F|1|0.19|ENSG00000198538|chr19:52801345-52801345|G/A|missense_variant	ZNF28|p.S167F|1|0.19|ENSG00000198538|chr19:52801345-52801345|G/A|missense_variant	ZNF28|p.S167F|1|0.19|ENSG00000198538|chr19:52801345-52801345|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	575.6671142578125	2	575.29857	1148.58259	-0.50089	-0.00028816	-0.012313	-7.0835E-06	-0.51321	-0.00029525	575.799965519653	58.283	0.40903	59.032	58.929	59.338	0.74894					12	7	2	0	0	0	0.59108	1	22135	22135		21.537	1.1224	1	1566900			41981	30208	30849	31098	40891	40891					0.014239226380595937
QVEKYHKHC	9	Unmodified	_QVEKYHKHC_					0	0	0		DCLRE1B|p.P531H|1|0.44|ENSG00000118655|chr1:113912184-113912184|C/A|missense_variant	DCLRE1B|p.P531H|1|0.44|ENSG00000118655|chr1:113912184-113912184|C/A|missense_variant	DCLRE1B|p.P531H|1|0.44|ENSG00000118655|chr1:113912184-113912184|C/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	391.966796875	3	391.19408	1170.56041	-0.42882	-0.00016775	-2.5692	-0.0010051	-2.998	-0.0011728	391.19438347017086	23.933	0.30584	24.563	24.283	24.588	0.63014					6	5	2	0	0	0	0.75519	1	7673	7673		14.405	2.9107	1	506410			41982	717	30850	31099	40892	40892					-0.018045803113636794
QVEMQYFG	8	Unmodified	_QVEMQYFG_					0	0	0			REV__PCDHGA12|p.L642Rfs*45|1|0.07|ENSG00000253159|chr5:141432684-141432711|TCGTAGTGGCCGTCCAGGACCACGGCCA/-|frameshift_variant	REV__PCDHGA12|p.L642Rfs*45|1|0.07|ENSG00000253159|chr5:141432684-141432711|TCGTAGTGGCCGTCCAGGACCACGGCCA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	501.6903991699219	2	501.223485	1000.43242	-0.15433	-7.7354E-05	0.37588	0.0001884	0.22155	0.00011105	501.22364768530525	111.83	0.5101	111.83	111.52	112.03	0					14	9	2	0	0	0	0.972	1	41051	41051		0	0	1	948920	+		41983	22848	30851	31100	40893	40893					-0.06778140625249307
QVENEILFPGC	11	Unmodified	_QVENEILFPGC_					0	0	0		nc|ENSG00000133488|Q9UDX3-2|SEC14L4;ENST00000320982.3_1_22:30886116-30899718:-|nuORF;ENST00000321205.9_1_22:30886096-30899699:-|nuORF;ENSG00000214491|ENST00000402034|SEC14L6;ENSG00000133488|ENST00000255858|SEC14L4	nc|ENSG00000133488|Q9UDX3-2|SEC14L4	nc|ENSG00000133488|Q9UDX3-2|SEC14L4	MSMS	A375_MHC_IP_R2	2	624.734130859375	2	624.800088	1247.58562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.714	1	84.454	83.954	84.954	0.73962								0	0	0	0.096852	1	31820	31820		36.506	1.5741	1				41984	4513	30852	31101	40894	40894					-0.028265702994303865
QVENWSAFAPD	11	Unmodified	_QVENWSAFAPD_					0	0	0		ENSG00000117222|ENST00000264515|RBBP5;nc|ENSG00000117222|Q15291-2|RBBP5	ENSG00000117222|ENST00000264515|RBBP5	ENSG00000117222|ENST00000264515|RBBP5	MULTI-SECPEP	A375_MHC_IP_R1	1	422.2595520019531	3	421.859532	1262.55677	-0.080625	-3.4013E-05	0.079676	3.3612E-05	-0.00094968	-4.0063E-07	421.8595297043668	33.216	0.71014	33.216	32.734	33.445	0					22	13	2	0	0	0	0.9754	1	10852	10852		4.1166	0.7609	1	4417700			41985	3464	30853	31102	40895	40895					-0.06400971604239203
QVEPGALRY	9	Unmodified	_QVEPGALRY_					0	0	0		ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-4|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;nc|ENSG00000124006|O75147-1|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF	ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-1|OBSL1	ENSG00000124006|ENST00000404537|OBSL1	MULTI-MSMS	A375_MHC_IP_R1	1	517.6876220703125	2	516.777274	1031.53999	-0.35626	-0.00018411	-0.26469	-0.00013678	-0.62094	-0.00032089	516.7771479014092	42.662	1.6227	42.662	41.828	43.451	0					91	31	5	0	0	0	0.06083	1	14769	14769		60.074	60.074	1	97842000			41986	3867;14575	30854	31103	40896	40896					0.02548572300474916
QVEPGALRY	9	Unmodified	_QVEPGALRY_					0	0	0		ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-4|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;nc|ENSG00000124006|O75147-1|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF	ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-1|OBSL1	ENSG00000124006|ENST00000404537|OBSL1	MULTI-MSMS	A375_MHC_IP_R2	2	517.6873168945312	2	516.777274	1031.53999	-0.7254	-0.00037487	-0.10362	-5.3547E-05	-0.82901	-0.00042841	516.777276182017	41.959	1.1731	42.734	42.198	43.372	0.77451					52	22	3	0	0	0	0.094655	1	15518	15518		51.63	18.844	1	107890000			41987	3867;14575	30854	31103	40897	40897					0.02548572300474916
QVERERRKLKR	11	Unmodified	_QVERERRKLKR_					0	0	0		ENSG00000126001|ENST00000397527|CEP250;nc|ENSG00000126001|Q9BV73-2|CEP250	ENSG00000126001|ENST00000397527|CEP250	ENSG00000126001|ENST00000397527|CEP250	MULTI-MSMS	A375_MHC_IP_R1	1	750.3588256835938	2	749.457865	1496.90118	-0.87171	-0.00065331	0.84668	0.00063455	-0.025034	-1.8762E-05	749.4582320856723	143.09	0.70689	143.09	142.64	143.34	0					32	13	3	0	0	0	0.73897	1	54992	54992		0.35063	0	1	3698400			41988	4019	30855	31104	40898	40898					0.1726018933402429
QVERERRKLKR	11	Unmodified	_QVERERRKLKR_					0	0	0		ENSG00000126001|ENST00000397527|CEP250;nc|ENSG00000126001|Q9BV73-2|CEP250	ENSG00000126001|ENST00000397527|CEP250	ENSG00000126001|ENST00000397527|CEP250	MULTI-MSMS	A375_MHC_IP_R2	2	749.8571166992188	2	749.457865	1496.90118	-0.67942	-0.0005092	0.75745	0.00056768	0.078035	5.8484E-05	749.458259916364	143.16	0.65813	143.19	142.74	143.39	0.030731					35	12	4	0	0	0	0.73897	1	55861	55861		0.35063	0	1	4270600			41989	4019	30855	31104	40899	40899					0.1726018933402429
QVESHHREV	9	Unmodified	_QVESHHREV_					0	0	0		MROH7|p.G944E|2|0.36|ENSG00000184313|chr1:54692543-54692543|G/A|missense_variant	MROH7|p.G944E|2|0.36|ENSG00000184313|chr1:54692543-54692543|G/A|missense_variant	MROH7|p.G944E|2|0.36|ENSG00000184313|chr1:54692543-54692543|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	561.197265625	2	560.778336	1119.54212	-0.6304	-0.00035352	-1.3545	-0.00075957	-1.9849	-0.0011131	560.7779599317023	67.306	0.81281	68.042	67.698	68.511	0.73631					52	15	5	0	0	0	0.24548	1	25475	25475		43.858	2.0187	1	27720000			41990	14404	30856	31105	40900	40900					-0.01286998961700192
QVFNLQGKTPV	11	Unmodified	_QVFNLQGKTPV_					0	0	0		nc|ENSG00000122224|Q9HBG7-3|LY9;nc|ENSG00000122224|Q9HBG7-2|LY9;nc|ENSG00000122224|Q9HBG7-4|LY9;ENSG00000122224|ENST00000263285|LY9	nc|ENSG00000122224|Q9HBG7-3|LY9	nc|ENSG00000122224|Q9HBG7-3|LY9	MULTI-MSMS	A375_MHC_IP_R2	2	411.2994079589844	3	410.89955	1229.67682	0.071078	2.9206E-05	-0.31321	-0.0001287	-0.24213	-9.9492E-05	410.8993977441701	42.12	0.66368	42.892	42.605	43.268	0.7724					23	12	3	0	0	0	0.73016	1	15672	15672		8.7518	0.80638	1	3988900			41991	3769	30857	31106	40901	40901					0.07117061460189689
QVFPGLLERV	10	Unmodified	_QVFPGLLERV_					0	0	0		ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENST00000483549.5_1_22:46114317-46136469:+|nuORF	ENSG00000130638|ENST00000252934|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	MULTI-SECPEP	A375_MHC_IP_R1	1	579.6954956054688	2	579.337498	1156.66044	-0.2008	-0.00011633	0.071243	4.1274E-05	-0.12956	-7.5058E-05	579.3375299261129	99.288	0.96156	99.288	98.762	99.723	0					42	18	3	0	0	0	0.61782	1	36424	36424		30.431	12.285	1	5458500			41992	4258	30858	31107	40902	40902					0.08837980294083536
QVFQRTIYIN	10	Unmodified	_QVFQRTIYIN_					0	0	0			REV__ENSG00000164935|ENST00000297581|DCSTAMP	REV__ENSG00000164935|ENST00000297581|DCSTAMP	MSMS	A375_MHC_IP_R2	2	641.347900390625	2	641.351137	1280.68772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.58	1	72.314	71.814	72.814	0.73421								0	0	0	0.15332	1	27156	27156		10.074	0.6908	1		+		41993	20530	30859	31108	40903	40903					0.05860463834505936
QVFYWVLVLNS	11	Unmodified	_QVFYWVLVLNS_					0	0	0		ENST00000418326.3_1_7:47853098-47859192:+|nuORF	ENST00000418326.3_1_7:47853098-47859192:+|nuORF	ENST00000418326.3_1_7:47853098-47859192:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	456.9830017089844	3	456.583451	1366.72852	-0.037226	-1.6997E-05	-0.97389	-0.00044466	-1.0111	-0.00046166	456.5830477613642	54.119	0.60616	54.119	53.809	54.415	0					18	11	2	0	0	0	0.72651	1	19334	19334		12.228	6.0357	1	1908300			41994	11705	30860	31109	40904	40904					0.05982805154098969
QVFYWVLVLNS	11	Unmodified	_QVFYWVLVLNS_					0	0	0		ENST00000418326.3_1_7:47853098-47859192:+|nuORF	ENST00000418326.3_1_7:47853098-47859192:+|nuORF	ENST00000418326.3_1_7:47853098-47859192:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	456.583451	1366.72852	-0.8316	-0.00037969	-0.10018	-4.5738E-05	-0.93177	-0.00042543	456.91752690571434	53.309	0.81845	54.06	53.79	54.609	0.75105	-0.029413	0.00064277	NaN	12.228	24	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1509400			41995	11705	30860	31109							0.05982805154098969
QVGEQQGHFHK	11	Unmodified	_QVGEQQGHFHK_					0	0	0			REV__ENST00000400376.2_1_7:2685390-2685471:+|nuORF	REV__ENST00000400376.2_1_7:2685390-2685471:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	648.2177734375	2	647.817993	1293.62143	-0.36914	-0.00023913	-0.52888	-0.00034262	-0.89802	-0.00058175	647.8177919311956	33.332	0.35645	33.332	33.14	33.496	0					9	6	2	0	0	0	0.72869	1	10906	10906		10.151	2.5416	1	1950100	+		41996	24401	30861	31110	40905	40905					-0.013633520075927663
QVGEQQGHFHK	11	Unmodified	_QVGEQQGHFHK_					0	0	0			REV__ENST00000400376.2_1_7:2685390-2685471:+|nuORF	REV__ENST00000400376.2_1_7:2685390-2685471:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	647.817993	1293.62143	-0.72041	-0.00046669	-0.056574	-3.665E-05	-0.77698	-0.00050334	647.8178585350272	32.595	0.30585	33.332	33.162	33.468	0.73691	-0.00016866	0.00025691	NaN	10.151	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1800200	+		41997	24401	30861	31110							-0.013633520075927663
QVGKANVITF	10	Unmodified	_QVGKANVITF_					0	0	0			REV__tr|U7SKA1|U7SKA1_FUSNUIroncomplextransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02156PE=4SV=1	REV__tr|U7SKA1|U7SKA1_FUSNUIroncomplextransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02156PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	359.94140625	3	359.541475	1075.60259	-0.14586	-5.2442E-05	0.046912	1.6867E-05	-0.098946	-3.5575E-05	359.54150202087555	41.7	0.66262	41.7	41.419	42.082	0					27	12	3	0	0	0	0.43117	1	14400	14400		21.59	0	1	12956000	+		41998	28248	30862	31111	40906	40906					0.06781718368642942
QVGKANVITF	10	Unmodified	_QVGKANVITF_					0	0	0			REV__tr|U7SKA1|U7SKA1_FUSNUIroncomplextransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02156PE=4SV=1	REV__tr|U7SKA1|U7SKA1_FUSNUIroncomplextransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02156PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	359.94140625	3	359.541475	1075.60259	-0.38309	-0.00013774	0.15975	5.7437E-05	-0.22334	-8.0299E-05	359.5415305093617	40.74	1.0161	41.515	40.93	41.946	0.77451					34	19	3	0	0	0	0.53946	1	15085	15085		27.223	3.4222	1	13812000	+		41999	28248	30862	31111	40907	40907					0.06781718368642942
QVGPTREL	8	Unmodified	_QVGPTREL_					0	0	0		ENSG00000115211|ENST00000347454|EIF2B4;ENST00000475582.5_1_2:27591484-27592470:-|nuORF	ENSG00000115211|ENST00000347454|EIF2B4	ENSG00000115211|ENST00000347454|EIF2B4	MULTI-MSMS	A375_MHC_IP_R1	1	451.25640869140625	2	450.250892	898.48723	-0.074503	-3.3545E-05	-0.20869	-9.3964E-05	-0.28319	-0.00012751	450.25078612398477	28.556	0.91128	28.556	28.238	29.149	0					48	17	4	0	0	0	0.74098	1	8909	8909		22.736	3.3743	1	46089000			42000	3281	30863	31112	40908	40908					0.03392614237657199
QVGPTREL	8	Unmodified	_QVGPTREL_					0	0	0		ENSG00000115211|ENST00000347454|EIF2B4;ENST00000475582.5_1_2:27591484-27592470:-|nuORF	ENSG00000115211|ENST00000347454|EIF2B4	ENSG00000115211|ENST00000347454|EIF2B4	MULTI-MSMS	A375_MHC_IP_R2	2	450.65081787109375	2	450.250892	898.48723	-0.34773	-0.00015657	-0.12328	-5.5509E-05	-0.47102	-0.00021208	450.2507947239412	27.882	0.75914	28.561	28.301	29.06	0.67857					37	14	4	0	0	0	0.073333	2	9548	9548;9664		99.799	18.186	1	41413000			42001	3281	30863	31112	40909;40910	40909					0.03392614237657199
QVGQHIIGTQ	10	Unmodified	_QVGQHIIGTQ_					0	0	0			REV__nc|ENSG00000102804|Q15714-3|TSC22D1	REV__nc|ENSG00000102804|Q15714-3|TSC22D1	MULTI-SECPEP	A375_MHC_IP_R1	1	361.58111572265625	3	360.864729	1079.57236	0.026911	9.7113E-06	-0.49844	-0.00017987	-0.47152	-0.00017016	360.86453925207775	27.611	0.40477	27.611	27.432	27.836	0					17	7	3	0	0	0	0.6774	1	8349	8349		18.721	13.674	1	3459900	+		42002	17234	30864	31113	40911	40911					0.03575359703495451
QVGRRTAIL	9	Unmodified	_QVGRRTAIL_					0	0	0		ENST00000603037.2_2_X:73423400-73423598:-|nuORF	ENST00000603037.2_2_X:73423400-73423598:-|nuORF	ENST00000603037.2_2_X:73423400-73423598:-|nuORF	MSMS	A375_MHC_IP_R2	2	507.73333740234375	2	507.314358	1012.61416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.346	1	95.09	94.59	95.59	0.74474								0	0	0	0.15486	1	35855	35855		4.756	0	1				42003	13893	30865	31114	40912	40912					0.10835960182646431
QVGSLSFPPLW	11	Unmodified	_QVGSLSFPPLW_					0	0	0		ENST00000382456.7_1_3:183901647-183901770:+|nuORF	ENST00000382456.7_1_3:183901647-183901770:+|nuORF	ENST00000382456.7_1_3:183901647-183901770:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	616.2293701171875	2	615.829506	1229.64446	-0.25243	-0.00015545	-0.10544	-6.4932E-05	-0.35787	-0.00022038	616.3308852510173	62.291	0.82055	62.291	61.839	62.66	0					31	15	3	0	0	0	0.90673	1	22458	22458		18.373	5.3306	1	2156700			42004	11387	30866	31115	40913	40913					0.03882274057173163
QVHERKKHLQR	11	Unmodified	_QVHERKKHLQR_					0	0	0			REV__ENST00000463135.1_1_X:37300766-37301252:+|nuORF	REV__ENST00000463135.1_1_X:37300766-37301252:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	730.824462890625	2	729.923658	1457.83276	-0.90899	-0.00066349	-0.85641	-0.00062512	-1.7654	-0.0012886	729.9231878862714	143.09	0.50436	143.09	142.74	143.24	0					24	9	3	0	0	0	0.73795	1	54864	54864		1.3295	0.13619	1	1555700	+		42005	24997	30867	31116	40914	40914					0.1221594475416623
QVHERKKHLQR	11	Unmodified	_QVHERKKHLQR_					0	0	0			REV__ENST00000463135.1_1_X:37300766-37301252:+|nuORF	REV__ENST00000463135.1_1_X:37300766-37301252:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	729.923658	1457.83276	-0.61478	-0.00044874	-1.2165	-0.00088798	-1.8313	-0.0013367	729.922780680662	143.1	0.60573	143.13	142.69	143.29	0.030731	0.02166	-0.00026123	NaN	1.3295	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1732700	+		42006	24997	30867	31116							0.1221594475416623
QVHSGETEI	9	Unmodified	_QVHSGETEI_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;ENST00000457594.2_7:74237150-74267816:-|nuORF;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	MULTI-MSMS	A375_MHC_IP_R1	1	500.19732666015625	2	500.240721	998.466889	-0.78842	-0.0003944	0.68274	0.00034153	-0.10569	-5.2868E-05	500.2410957179171	68.009	0.55605	68.009	67.754	68.31	0					17	10	2	0	0	0	0.46038	1	24607	24607		21.747	0.87544	1	2102800			42007	7876	30868	31117	40915	40915					-0.0324060121280354
QVHYGDISAF	10	Unmodified	_QVHYGDISAF_					0	0	0		nc|ENSG00000145730|P19021-2|PAM;nc|ENSG00000145730|P19021-4|PAM;nc|ENSG00000145730|P19021-3|PAM;nc|ENSG00000145730|P19021-6|PAM;ENSG00000145730|ENST00000438793|PAM;nc|ENSG00000145730|P19021-5|PAM	nc|ENSG00000145730|P19021-2|PAM	nc|ENSG00000145730|P19021-2|PAM	MULTI-SECPEP	A375_MHC_IP_R1	1	379.91748046875	3	379.517218	1135.52982	0.28757	0.00010914	0.38674	0.00014678	0.67431	0.00025591	379.5171805701452	47.272	0.51349	47.272	47.003	47.517	0					23	9	3	0	0	0	0.90513	1	16601	16601		2.6312	1.1761	1	5055200			42008	5575	30869	31118	40916	40916					-0.03252035424748101
QVHYGDISAF	10	Unmodified	_QVHYGDISAF_					0	0	0		nc|ENSG00000145730|P19021-2|PAM;nc|ENSG00000145730|P19021-4|PAM;nc|ENSG00000145730|P19021-3|PAM;nc|ENSG00000145730|P19021-6|PAM;ENSG00000145730|ENST00000438793|PAM;nc|ENSG00000145730|P19021-5|PAM	nc|ENSG00000145730|P19021-2|PAM	nc|ENSG00000145730|P19021-2|PAM	MULTI-MATCH	A375_MHC_IP_R2	2		3	379.517218	1135.52982	0.16662	6.3237E-05	0.47448	0.00018007	0.6411	0.00024331	379.5171493219347	46.356	0.56011	47.121	46.855	47.416	0.76519	-0.075547	6.654E-05	NaN	2.6312	30	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6233800			42009	5575	30869	31118							-0.03252035424748101
QVIKILKYEKK	11	Unmodified	_QVIKILKYEKK_					0	0	0		ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3;ENSG00000054277|ENST00000366554|OPN3	ENST00000462265.5_1_1:241755332-241761290:-|nuORF	ENST00000462265.5_1_1:241755332-241761290:-|nuORF	MSMS	A375_MHC_IP_R2	2	695.3428344726562	2	695.445037	1388.87552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.47	1	143.5	143	144	0.024414								0	0	0	0.16353	1	56069	56069		0.35063	0	1				42010	1258	30870	31119	40917	40917					0.1966390203899664
QVKCLLESL	9	Unmodified	_QVKCLLESL_					0	0	0		ENSG00000138771|ENST00000296043|SHROOM3	ENSG00000138771|ENST00000296043|SHROOM3	ENSG00000138771|ENST00000296043|SHROOM3	MULTI-SECPEP	A375_MHC_IP_R2	2	516.1885986328125	2	516.791535	1031.56852	-0.93592	-0.00048368	0.46456	0.00024008	-0.47136	-0.0002436	516.7920578404663	65.706	0.55898	66.444	66.018	66.577	0.73811					13	10	2	0	0	0	0.60917	1	24943	24943		25.399	7.253	1	1045000			42011	5031	30871	31120	40918	40918					0.053995538853769176
QVKEIVKRKL	10	Unmodified	_QVKEIVKRKL_					0	0	0			REV__ENSG00000171560|ENST00000403106|FGA	REV__ENSG00000171560|ENST00000403106|FGA	MULTI-SECPEP	A375_MHC_IP_R1	1	414.6750793457031	3	414.27484	1239.80269	0.16378	6.7849E-05	0.0051281	2.1244E-06	0.16891	6.9973E-05	414.27490515036357	36.946	0.40155	36.946	36.695	37.096	0					14	7	3	0	0	0	0.92832	1	12466	12466		8.4443	0	1	2528400	+		42012	21078	30872	31121	40919	40919					0.19238193036267148
QVKELLTSF	9	Unmodified	_QVKELLTSF_					0	0	0		nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	MULTI-SECPEP	A375_MHC_IP_R2	2	533.2026977539062	2	532.802957	1063.59136	-0.70092	-0.00037345	1.1285	0.00060129	0.42762	0.00022784	532.8034842029541	76.159	0.45506	76.9	76.64	77.095	0.74052					13	8	2	0	0	0	0.41731	1	28930	28930		24.991	4.5373	1	1966100			42013	1339	30873	31122	40920	40920					0.06210896274501465
QVKKKKKKKF	10	Unmodified	_QVKKKKKKKF_					0	0	0			REV__ENST00000527958.5_1_11:117041336-117041564:+|nuORF	REV__ENST00000527958.5_1_11:117041336-117041564:+|nuORF	MSMS	A375_MHC_IP_R1	1	645.6884765625	2	645.442632	1288.87071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.68	1	105.68	105.18	106.18	0								0	0	0	0.15596	1	38795	38795		1.4819	1.0812	1		+		42014	25795	30874	31123	40921	40921					0.23783062686925405
QVKNSLPV	8	Unmodified	_QVKNSLPV_					0	0	0		ENST00000453712.6_1_4:99313228-99325675:+|nuORF	ENST00000453712.6_1_4:99313228-99325675:+|nuORF	ENST00000453712.6_1_4:99313228-99325675:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	443.1635437011719	2	442.763635	883.512717	-0.28033	-0.00012412	-0.22871	-0.00010126	-0.50904	-0.00022539	442.7635630776724	88.902	0.45386	89.634	89.482	89.936	0.7318					15	8	3	0	0	0	0.55372	1	33873	33873		39.957	5.8549	1	1219600			42015	12100	30875	31124	40922	40922					0.0663008876007325
QVKPLGPQ	8	Unmodified	_QVKPLGPQ_					0	0	0		ENSG00000204539|ENST00000376288|CDSN	ENSG00000204539|ENST00000376288|CDSN	ENSG00000204539|ENST00000376288|CDSN	MULTI-SECPEP	A375_MHC_IP_R1	1	433.097900390625	2	433.758352	865.502152	-0.20583	-8.9279E-05	0.048929	2.1223E-05	-0.1569	-6.8055E-05	433.75832368748127	46.37	0.96026	46.37	45.992	46.952	0					45	18	3	0	0	0	0.91495	1	16415	16415		7.9102	0	1	22030000			42016	9455	30876	31125	40923	40923					0.06402106105656458
QVKPRQKEVVS	11	Unmodified	_QVKPRQKEVVS_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MSMS	A375_MHC_IP_R2	2	433.2851867675781	3	433.257738	1296.75138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.47	1	142.5	142	143	0.030731								0	0	0	0.16309	1	55694	55694		2.6312	0	1		+		42017	20801	30877	31126	40924	40924					0.11487824271557656
QVKRVVVRLGV	11	Unmodified	_QVKRVVVRLGV_					0	0	0			REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF	REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF	MSMS	A375_MHC_IP_R1	1	418.2684631347656	3	418.278585	1251.81392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.939	1	70.939	70.439	71.439	0								0	0	0	0.16297	1	25765	25765		1.3296	0.82369	1		+		42018	23900	30878	31127	40925	40925					0.19809015130385887
QVKYLTTY	8	Unmodified	_QVKYLTTY_					0	0	0		ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	MSMS	A375_MHC_IP_R1	1	508.18414306640625	2	508.276575	1014.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.322	1	80.322	79.822	80.822	0								0	0	0	0.16876	1	29329	29329		18.135	1.1927	1				42019	7007	30879	31128	40926	40926					0.03190938211696448
QVLAHAMRLTL	11	Unmodified	_QVLAHAMRLTL_					0	0	0			REV__ENST00000515194.5_1_4:2938769-2938895:+|nuORF	REV__ENST00000515194.5_1_4:2938769-2938895:+|nuORF	MSMS	A375_MHC_IP_R1	1	418.1634521484375	3	418.244664	1251.71216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.497	1	44.497	43.997	44.997	0								0	0	0	0.15694	1	15528	15528		12.856	4.4116	1		+		42020	25659	30880	31129	40927	40927					0.09637400716314914
QVLDGKVAVV	10	Unmodified	_QVLDGKVAVV_					0	0	0		nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5;nc|ENSG00000134532|P35711-3|SOX5	nc|ENSG00000134532|P35711-2|SOX5	nc|ENSG00000134532|P35711-2|SOX5	MULTI-SECPEP	A375_MHC_IP_R1	1	514.7106323242188	2	514.310949	1026.60735	-0.54232	-0.00027892	0.081373	4.1851E-05	-0.46094	-0.00023707	514.3109174942203	58.087	0.55694	58.087	57.822	58.379	0					24	10	3	0	0	0	0.12766	1	20826	20826		79.596	20.917	1	5940800			42021	4585	30881	31130	40928	40928					0.09510602511409161
QVLDGKVAVV	10	Unmodified	_QVLDGKVAVV_					0	0	0		nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5;nc|ENSG00000134532|P35711-3|SOX5	nc|ENSG00000134532|P35711-2|SOX5	nc|ENSG00000134532|P35711-2|SOX5	MULTI-SECPEP	A375_MHC_IP_R2	2	514.7103271484375	2	514.310949	1026.60735	-1.1401	-0.00058639	0.15476	7.9596E-05	-0.98538	-0.00050679	514.310986011156	57.199	0.5103	57.949	57.712	58.222	0.75001					20	9	3	0	0	0	0.033119	1	21626	21626		99.755	21.606	1	8215800			42022	4585	30881	31130	40929	40929					0.09510602511409161
QVLFTRILA	9	Unmodified	_QVLFTRILA_					0	0	0		MED16|p.S523F|1|0.2|ENSG00000175221|chr19:875447-875447|G/A|missense_variant	MED16|p.S523F|1|0.2|ENSG00000175221|chr19:875447-875447|G/A|missense_variant	MED16|p.S523F|1|0.2|ENSG00000175221|chr19:875447-875447|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	530.1956176757812	2	530.829309	1059.64407	-0.61666	-0.00032734	0.13421	7.1243E-05	-0.48245	-0.0002561	530.8292801195664	77.98	0.35809	78.723	78.52	78.878	0.74294					9	6	2	0	0	0	0.69179	1	29665	29665		22.736	3.4793	1	1275700			42023	14369	30882	31131	40930	40930					0.11662899127986748
QVLMEEPP	8	Unmodified	_QVLMEEPP_					0	0	0		ENSG00000149575|ENST00000278947|SCN2B	ENSG00000149575|ENST00000278947|SCN2B	ENSG00000149575|ENST00000278947|SCN2B	MSMS	A375_MHC_IP_R2	2	471.6581115722656	2	471.733686	941.452819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.21	1	40.985	40.485	41.485	0.77451								0	0	0	0.16876	1	14882	14882		14.582	2.0501	1				42024	5817	30883	31132	40931	40931					-0.02024969965452783
QVLNVVNNIFH	11	Unmodified	_QVLNVVNNIFH_					0	0	0		ENSG00000136014|ENST00000258499|USP44	ENSG00000136014|ENST00000258499|USP44	ENSG00000136014|ENST00000258499|USP44	MSMS	A375_MHC_IP_R2	2	648.8592529296875	2	648.856586	1295.69862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.86	1	120.39	119.89	120.89	0.5321								0	0	0	0.15694	1	45679	45679		16.149	0.90062	1				42025	4741	30884	31133	40932	40932					0.06259866208733911
QVLQEVNLPI	10	Unmodified	_QVLQEVNLPI_					0	0	0		nc|ENSG00000183378|Q7RTZ1|OVCH2;ENSG00000183378|ENST00000533663|OVCH2	nc|ENSG00000183378|Q7RTZ1|OVCH2	nc|ENSG00000183378|Q7RTZ1|OVCH2	MSMS	A375_MHC_IP_R1	1	384.9365234375	3	384.892284	1151.65502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.164	1	24.164	23.664	24.664	0								0	0	0	0.15464	1	6787	6787		5.7834	0.38072	1				42026	8489	30885	31134	40933	40933					0.08526256711616043
QVLRLMHSLGI	11	Unmodified	_QVLRLMHSLGI_					0	0	0		ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MULTI-SECPEP	A375_MHC_IP_R2	2	422.16961669921875	3	422.916547	1265.72781	-0.064492	-2.7275E-05	-2.1439	-0.00090669	-2.2084	-0.00093396	423.24967812600875	133.23	0.25456	133.39	133.3	133.55	0.16487					6	4	2	0	0	0	1.0011	1	52406	52406		0.45452	0	1	813180			42027	7476	30886	31135	40934	40934					0.1055768723338133
QVLWFQLSI	9	Unmodified	_QVLWFQLSI_					0	0	0		ENST00000373970.3_1_10:54076585-54076795:+|nuORF	ENST00000373970.3_1_10:54076585-54076795:+|nuORF	ENST00000373970.3_1_10:54076585-54076795:+|nuORF	MSMS	A375_MHC_IP_R2	2	378.61279296875	3	378.54997	1132.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.958	1	70.693	70.193	71.193	0.73421								0	0	0	0.15438	1	26519	26519		14.405	1.5328	1				42028	11244	30887	31136	40935	40935					0.06707192891099112
QVLWQLDIFRR	11	Unmodified	_QVLWQLDIFRR_					0	0	0		USP53|p.G660Efs*11|1|0.52|ENSG00000145390|chr4:119271838-119271838|G/-|frameshift_variant;USP53|p.N778Kfs*11|1|0.6|ENSG00000145390|chr4:119291240-119291241|-/A|frameshift_variant;ENSG00000145390|ENST00000692078|USP53	USP53|p.G660Efs*11|1|0.52|ENSG00000145390|chr4:119271838-119271838|G/-|frameshift_variant	USP53|p.G660Efs*11|1|0.52|ENSG00000145390|chr4:119271838-119271838|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	491.45098876953125	3	491.949016	1472.82522	-0.16618	-8.1752E-05	-2.1372	-0.0010514	-2.3034	-0.0011332	492.2821057843636	78.501	0.35571	78.501	78.301	78.657	0					11	6	2	0	0	0	0.99916	1	28689	28689		2.4348	1.1051	1	1698500			42029	5557	30888	31137	40936	40936					0.10771792433843075
QVMKLARE	8	Unmodified	_QVMKLARE_					0	0	0			REV__ENSG00000125675|ENST00000620443|GRIA3	REV__ENSG00000125675|ENST00000620443|GRIA3	MULTI-SECPEP	A375_MHC_IP_R2	2	488.4693908691406	2	487.776219	973.537886	-0.96524	-0.00047082	-4.4124	-0.0021523	-5.3777	-0.0026231	487.7746765056357	57.286	0.71229	58.035	57.611	58.323	0.74894					18	13	2	0	0	0	0.94587	1	21646	21646		14.838	0	1	1898900	+		42030	18355	30889	31138	40937	40937					0.05005820291000873
QVNLEGKQFS	10	Unmodified	_QVNLEGKQFS_					0	0	0			REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL	REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL	MULTI-MSMS	A375_MHC_IP_R1	1	576.1954956054688	2	575.29857	1148.58259	-0.48178	-0.00027717	-2.4661	-0.0014188	-2.9479	-0.0016959	575.2988005712918	41.625	0.96831	41.625	41.215	42.183	0					49	18	4	0	0	0	0.48529	1	14322	14322		29.082	1.4528	1	15778000	+		42031	18069	30890	31139	40938	40938					0.014239226380595937
QVPDDLPNV	9	Unmodified	_QVPDDLPNV_					0	0	0		ENSG00000080345|ENST00000444746|RIF1;nc|ENSG00000080345|Q5UIP0-2|RIF1	ENSG00000080345|ENST00000444746|RIF1	ENSG00000080345|ENST00000444746|RIF1	MULTI-SECPEP	A375_MHC_IP_R1	1	499.1532897949219	2	498.753464	995.492375	-0.41505	-0.00020701	0.37043	0.00018476	-0.04462	-2.2254E-05	498.7533588718219	75.98	0.60543	75.98	75.664	76.269	0					15	11	2	0	0	0	0.58271	1	27742	27742		14.838	0	1	1914900			42032	1712	30891	31140	40939	40939					-0.0055512669038080276
QVPDDLPNV	9	Unmodified	_QVPDDLPNV_					0	0	0		ENSG00000080345|ENST00000444746|RIF1;nc|ENSG00000080345|Q5UIP0-2|RIF1	ENSG00000080345|ENST00000444746|RIF1	ENSG00000080345|ENST00000444746|RIF1	MULTI-MSMS	A375_MHC_IP_R2	2	498.6988830566406	2	498.753464	995.492375	-0.56133	-0.00027996	0.27621	0.00013776	-0.28512	-0.0001422	498.75335624466135	75.326	0.61011	76.067	75.724	76.334	0.74052					12	11	2	0	0	0	0.53367	1	28623	28623		18.146	1.9972	1	1643100			42033	1712	30891	31140	40940	40940					-0.0055512669038080276
QVPKILYSEL	10	Unmodified	_QVPKILYSEL_					0	0	0			REV__nc|ENSG00000146426|Q8IVF5-3|TIAM2	REV__nc|ENSG00000146426|Q8IVF5-3|TIAM2	MULTI-SECPEP	A375_MHC_IP_R2	2	594.695068359375	2	595.344989	1188.67542	-0.37397	-0.00022264	-0.123	-7.3229E-05	-0.49697	-0.00029587	595.3447312042842	99.222	1.0673	99.982	99.657	100.72	0.75977					44	20	3	0	0	0	0.88918	1	37797	37797		5.2969	0	1	13919000	+		42034	19536	30892	31141	40941	40941					0.08863427371420585
QVPKYEEEEEE	11	Unmodified	_QVPKYEEEEEE_					0	0	0		ENSG00000163637|ENST00000638394|PRICKLE2	ENSG00000163637|ENST00000638394|PRICKLE2	ENSG00000163637|ENST00000638394|PRICKLE2	MSMS	A375_MHC_IP_R1	1	704.8082885742188	2	704.809362	1407.60417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.72	1	106.72	106.22	107.22	0								0	0	0	0.16302	1	39171	39171		2.9952	0.26005	1				42035	6700	30893	31142	40942	40942					-0.08332781914555198
QVPPTPPIVP	10	Unmodified	_QVPPTPPIVP_					0	0	0			REV__ENST00000467731.1_1_21:33057290-33073360:-|nuORF	REV__ENST00000467731.1_1_21:33057290-33073360:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	522.675537109375	2	522.808042	1043.60153	-0.49697	-0.00025982	-2.8112	-0.0014697	-3.3081	-0.0017295	523.3083685834982	74.425	0.4068	74.425	74.197	74.604	0					9	7	2	0	0	0	0.61429	1	27107	27107		30.637	1.555	1	773480	+		42036	19976	30894	31143	40943	40943					0.08147503999748551
QVPYYLENEP	10	Unmodified	_QVPYYLENEP_					0	0	0		ENST00000488573.1_1_6:152129326-152132204:+|nuORF;nc|ENSG00000091831|P03372-2|ESR1;ENSG00000091831|ENST00000206249|ESR1	ENST00000488573.1_1_6:152129326-152132204:+|nuORF	ENST00000488573.1_1_6:152129326-152132204:+|nuORF	MSMS	A375_MHC_IP_R1	1	626.6968994140625	2	626.298236	1250.58192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.121	1	30.121	29.621	30.621	0								0	0	0	0.15372	1	9529	9529		8.7454	0	1				42037	1986	30895	31144	40944	40944					-0.033349168016684416
QVQILQHVSI	10	Unmodified	_QVQILQHVSI_					0	0	0		ENST00000518381.5_1_5:138209817-138216790:+|nuORF	ENST00000518381.5_1_5:138209817-138216790:+|nuORF	ENST00000518381.5_1_5:138209817-138216790:+|nuORF	MSMS	A375_MHC_IP_R2	2	583.0301513671875	2	582.840405	1163.66626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.415	1	89.147	88.647	89.647	0.7318								0	0	0	0.15332	1	33647	33647		10.074	0	1				42038	12972	30896	31145	40945	40945					0.09097078805734782
QVQPPLEDF	9	Unmodified	_QVQPPLEDF_					0	0	0		ENST00000473978.5_1_3:195974446-195974587:-|nuORF	ENST00000473978.5_1_3:195974446-195974587:-|nuORF	ENST00000473978.5_1_3:195974446-195974587:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	537.47802734375	2	536.769114	1071.52368	-0.72403	-0.00038864	-0.54849	-0.00029441	-1.2725	-0.00068305	536.7688243169264	110.09	0.66653	110.83	110.53	111.19	0.73692					17	12	2	0	0	0	0.78798	1	41491	41491		7.2892	4.4	1	1255800			42039	12398	30897	31146	40946	40946					-0.00922553656278069
QVQQEVIPAP	10	Unmodified	_QVQQEVIPAP_					0	0	0		ENST00000492598.1_1_1:17302954-17303350:-|nuORF;ENST00000478684.5_1_1:17302954-17304768:-|nuORF;ENST00000490075.5_1_1:17301417-17303350:-|nuORF;nc|ENSG00000117122|P55001-3|MFAP2;nc|ENSG00000117122|P55001-2|MFAP2;ENSG00000117122|ENST00000375535|MFAP2	ENST00000492598.1_1_1:17302954-17303350:-|nuORF	ENST00000492598.1_1_1:17302954-17303350:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	555.2029418945312	2	554.803488	1107.59242	-0.46401	-0.00025744	1.5471	0.00085835	1.0831	0.00060091	554.8032560374401	62.223	0.92297	62.223	61.839	62.762	0					37	17	3	0	0	0	0.72086	1	22435	22435		18.146	0	1	2988700			42040	3456	30898	31147	40947	40947					0.0429311064342528
QVRAQAVSL	9	Unmodified	_QVRAQAVSL_					0	0	0			REV__chr2:197503128-197510428|190|12.63|0.0|20.27|+|1|HSPE1,None|3	REV__chr2:197503128-197510428|190|12.63|0.0|20.27|+|1|HSPE1,None|3	MULTI-SECPEP	A375_MHC_IP_R2	2	486.68499755859375	2	486.285266	970.555979	-0.55487	-0.00026983	0.2233	0.00010859	-0.33157	-0.00016124	486.28528888810985	46.015	0.50474	46.78	46.453	46.957	0.76519					22	9	3	0	0	0	0.28216	1	17193	17193		41.84	11.999	1	7157000	+		42041	15733	30899	31148	40948	40948					0.06952278537380607
QVRAQAVSL	9	Unmodified	_QVRAQAVSL_					0	0	0			REV__chr2:197503128-197510428|190|12.63|0.0|20.27|+|1|HSPE1,None|3	REV__chr2:197503128-197510428|190|12.63|0.0|20.27|+|1|HSPE1,None|3	MULTI-MATCH	A375_MHC_IP_R1	1		2	486.285266	970.555979	-0.41252	-0.0002006	0.23014	0.00011191	-0.18238	-8.869E-05	486.2852484304027	46.86	0.45988	46.86	46.647	47.107	0	0.039882	4.315E-06	NaN	41.84	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5269500	+		42042	15733	30899	31148							0.06952278537380607
QVRETVKSPF	10	Unmodified	_QVRETVKSPF_					0	0	0		ENSG00000206072|ENST00000544088|SERPINB11	ENSG00000206072|ENST00000544088|SERPINB11	ENSG00000206072|ENST00000544088|SERPINB11	MULTI-MSMS	A375_MHC_IP_R1	1	397.94500732421875	3	397.555784	1189.64552	-0.0018245	-7.2533E-07	0.086585	3.4422E-05	0.08476	3.3697E-05	397.55578691698616	47.675	0.50302	47.675	47.467	47.97	0					13	9	2	0	0	0	0.61179	1	16779	16779		19.987	2.1237	1	1255500			42043	9536	30900	31149	40949	40949					0.058284884260729086
QVRETVKSPF	10	Unmodified	_QVRETVKSPF_					0	0	0		ENSG00000206072|ENST00000544088|SERPINB11	ENSG00000206072|ENST00000544088|SERPINB11	ENSG00000206072|ENST00000544088|SERPINB11	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	397.555784	1189.64552	-0.0018245	-7.2533E-07	0.086585	3.4422E-05	0.08476	3.3697E-05	397.55578691698616	47.675	0.50302	47.675	47.467	47.97	0	0.047063	0.00027901	NaN	19.987	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1255500			42044	9536	30900	31149							0.058284884260729086
QVRETVKSPF	10	Unmodified	_QVRETVKSPF_					0	0	0		ENSG00000206072|ENST00000544088|SERPINB11	ENSG00000206072|ENST00000544088|SERPINB11	ENSG00000206072|ENST00000544088|SERPINB11	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	397.555784	1189.64552	0.093405	3.7134E-05	-0.33993	-0.00013514	-0.24652	-9.8006E-05	397.55570682579685	46.82	0.55811	47.581	47.361	47.919	0.76128	-0.047063	-0.00022968	NaN	19.987	16	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3043000			42045	9536	30900	31149							0.058284884260729086
QVRHFYYRTW	10	Unmodified	_QVRHFYYRTW_					0	0	0		ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	MULTI-MSMS	A375_MHC_IP_R1	1	485.94415283203125	3	485.914194	1454.72075	-0.4991	-0.00024252	-1.1733	-0.00057011	-1.6724	-0.00081262	485.9136831214442	32.616	0.30082	32.616	32.434	32.734	0					12	5	3	0	0	0	0.70972	1	10588	10588		7.9454	1.3219	1	2438500			42046	944	30901	31150	40950	40950					0.011580906771541777
QVRHFYYRTW	10	Unmodified	_QVRHFYYRTW_					0	0	0		ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	MULTI-MATCH	A375_MHC_IP_R2	2		3	485.914194	1454.72075	-0.61667	-0.00029965	-1.5439	-0.00075018	-2.1605	-0.0010498	486.2474151984959	31.818	0.35362	32.555	32.401	32.755	0.73691	-0.030494	-0.0003226	NaN	7.9454	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1923300			42047	944	30901	31150							0.011580906771541777
QVRRYKVNRR	10	Unmodified	_QVRRYKVNRR_					0	0	0			REV__nc|ENSG00000185760|Q9NR82-4|KCNQ5	REV__nc|ENSG00000185760|Q9NR82-4|KCNQ5	MULTI-SECPEP	A375_MHC_IP_R2	2	688.312744140625	2	687.913093	1373.81163	-0.47713	-0.00032822	0.69767	0.00047993	0.22054	0.00015171	687.9134639826704	143.1	0.96533	143.13	142.48	143.45	0.030731					56	18	5	0	0	0	0.94862	1	55910	55910		1.6526	1.6526	1	18810000	+		42048	21917	30902	31151	40951	40951					0.13967979445283163
QVRYVRTW	8	Unmodified	_QVRYVRTW_					0	0	0			REV__nc|ENSG00000134014|Q9H9T3-4|ELP3	REV__nc|ENSG00000134014|Q9H9T3-4|ELP3	MULTI-MSMS	A375_MHC_IP_R1	1	554.22314453125	2	554.306532	1106.59851	-0.44871	-0.00024872	-0.44665	-0.00024758	-0.89535	-0.0004963	554.3063097028132	51.296	0.45649	51.296	51.068	51.525	0					17	8	3	0	0	0	0.77028	1	18210	18210		13.508	0	1	4776300	+		42049	18747	30903	31152	40952	40952					0.04947673665606089
QVRYVRTW	8	Unmodified	_QVRYVRTW_					0	0	0			REV__nc|ENSG00000134014|Q9H9T3-4|ELP3	REV__nc|ENSG00000134014|Q9H9T3-4|ELP3	MULTI-SECPEP	A375_MHC_IP_R1	1	554.705810546875	2	554.306532	1106.59851	-0.44871	-0.00024872	-0.44665	-0.00024758	-0.89535	-0.0004963	554.3063097028132	51.296	0.45649	51.296	51.068	51.525	0					17	8	3	0	0	0	0.93777	1	18188	18188		22.736	0.078198	1	4776300	+		42050	18747	30903	31152	40953	40953					0.04947673665606089
QVRYVRTW	8	Unmodified	_QVRYVRTW_					0	0	0			REV__nc|ENSG00000134014|Q9H9T3-4|ELP3	REV__nc|ENSG00000134014|Q9H9T3-4|ELP3	MULTI-SECPEP	A375_MHC_IP_R2	2	554.7061767578125	2	554.306532	1106.59851	-0.96395	-0.00053432	0.40129	0.00022244	-0.56266	-0.00031188	554.3066714693019	50.278	0.45639	51.032	50.804	51.26	0.75406					17	8	3	0	0	0	0.94587	1	18907	18907		20.454	3.5113	1	4293300	+		42051	18747	30903	31152	40954	40954					0.04947673665606089
QVSEERLW	8	Unmodified	_QVSEERLW_					0	0	0		ENST00000441280.7_1_17:41108193-41116457:-|nuORF	ENST00000441280.7_1_17:41108193-41116457:-|nuORF	ENST00000441280.7_1_17:41108193-41116457:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	524.1668090820312	2	523.766906	1045.51926	-0.69305	-0.000363	-0.32823	-0.00017192	-1.0213	-0.00053491	523.7668035544378	85.016	0.40944	85.016	84.697	85.107	0					11	7	2	0	0	0	0.92636	1	31163	31163		23.148	12.324	1	1651900			42052	11982	30904	31153	40955	40955					-0.0016801807919364364
QVSKKHIIY	9	Unmodified	_QVSKKHIIY_					0	0	0		nc|ENSG00000257127|Q5K131|CLLU1	nc|ENSG00000257127|Q5K131|CLLU1	nc|ENSG00000257127|Q5K131|CLLU1	MSMS	A375_MHC_IP_R2	2	372.57684326171875	3	372.557236	1114.64988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.277	1	23.908	23.408	24.408	0.63014								0	0	0	0.15486	1	7460	7460		4.5289	0	1				42053	14924	30905	31154	40956	40956					0.0971399763966474
QVSLQYME	8	Unmodified	_QVSLQYME_					0	0	0		ENSG00000163424|ENST00000295622|TEX55	ENSG00000163424|ENST00000295622|TEX55	ENSG00000163424|ENST00000295622|TEX55	MSMS	A375_MHC_IP_R1	1	499.1363525390625	2	499.236593	996.458632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.97	1	39.97	39.47	40.47	0								0	0	0	0.16876	1	13705	13705		23.148	3.7094	1				42054	6660	30906	31155	40957	40957					-0.0397387145378616
QVSQFIRK	8	Unmodified	_QVSQFIRK_					0	0	0		nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;ENST00000487109.5_1_9:139906084-139911410:-|nuORF	nc|ENSG00000107331|Q9BZC7|ABCA2	nc|ENSG00000107331|Q9BZC7|ABCA2	MULTI-SECPEP	A375_MHC_IP_R2	2	503.7055358886719	2	503.295633	1004.57671	-0.45956	-0.0002313	0.16091	8.0984E-05	-0.29865	-0.00015031	503.29570812097114	142.66	1.2662	142.69	141.98	143.24	0.030731					37	24	2	0	0	0	0.972	1	55912	55912		5.2307	0	1	1878100			42055	2735	30907	31156	40958	40958					0.07460868917041807
QVSTVHLQL	9	Unmodified	_QVSTVHLQL_					0	0	0		ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	MSMS	A375_MHC_IP_R1	1	512.7188110351562	2	512.792924	1023.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.159	1	76.159	75.659	76.659	0								0	0	0	0.15411	1	27757	27757		14.838	0	1				42056	1868	30908	31157	40959	40959					0.0604514533456495
QVSVKIIKCFY	11	Unmodified	_QVSVKIIKCFY_					0	0	0		ENST00000494867.1_1_2:61505263-61508266:-|nuORF	ENST00000494867.1_1_2:61505263-61508266:-|nuORF	ENST00000494867.1_1_2:61505263-61508266:-|nuORF	MSMS	A375_MHC_IP_R2	2	664.4532470703125	2	664.375766	1326.73698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.264	1	86	85.5	86.5	0.73601								0	0	0	0.16297	1	32414	32414		3.2813	0	1				42057	12696	30909	31158	40960	40960					0.08668035799041718
QVTDQKGTF	9	Unmodified	_QVTDQKGTF_					0	0	0			REV__ENSG00000249437|ENST00000517649|NAIP	REV__ENSG00000249437|ENST00000517649|NAIP	MULTI-SECPEP	A375_MHC_IP_R2	2	511.9886474609375	2	512.258914	1022.50327	-0.81088	-0.00041538	0.10857	5.5616E-05	-0.70231	-0.00035977	512.2591566320162	40.293	0.35474	41.068	40.828	41.183	0.77451					9	6	2	0	0	0	0.35487	1	14891	14891		36.127	0	1	1212500	+		42058	22836	30910	31159	40961	40961					-0.007077243161006663
QVTERQRW	8	Unmodified	_QVTERQRW_					0	0	0			REV__ENST00000493036.5_1_7:63774252-63774372:+|nuORF	REV__ENST00000493036.5_1_7:63774252-63774372:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1110229492188	2	551.791247	1101.56794	-0.67292	-0.00037131	2.8737	0.0015857	2.2008	0.0012144	552.2949844299826	109.54	0.8625	110.29	109.67	110.54	0.74683					28	10	4	0	0	0	0.94479	1	41231	41231		13.508	0	1	1497600	+		42059	25419	30911	31160	40962	40962					0.021218952805838853
QVTLLKAGTF	10	Unmodified	_QVTLLKAGTF_					0	0	0		ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	MULTI-SECPEP	A375_MHC_IP_R1	1	360.6048583984375	3	359.881608	1076.623	-0.18384	-6.616E-05	-0.34699	-0.00012488	-0.53083	-0.00019104	360.21569866415535	23.531	0.25464	23.531	23.33	23.584	0					8	4	2	0	0	0	0.74754	1	6399	6399		10.899	3.7972	1	3262300			42060	4039	30912	31161	40963	40963					0.08774889028450161
QVTPEGRI	8	Unmodified	_QVTPEGRI_					0	0	0		nc|ENSG00000182621|Q9NQ66-2|PLCB1;ENSG00000182621|ENST00000338037|PLCB1	nc|ENSG00000182621|Q9NQ66-2|PLCB1	nc|ENSG00000182621|Q9NQ66-2|PLCB1	MULTI-MSMS	A375_MHC_IP_R2	2	450.1893310546875	2	450.250892	898.48723	-0.34773	-0.00015657	-0.12328	-5.5509E-05	-0.47102	-0.00021208	450.2507947239412	27.882	0.75914	28.561	28.301	29.06	0.67857					37	14	4	0	0	0	0.31691	1	9728	9728		57.471	2.6978	1	41413000			42061	8424	30913	31162	40964	40964					0.03392614237657199
QVTPSPCTCSP	11	Unmodified	_QVTPSPCTCSP_					0	0	0			REV__ENST00000494270.6_1_10:104209738-104210025:+|nuORF	REV__ENST00000494270.6_1_10:104209738-104210025:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	560.2119140625	2	560.244092	1118.47363	-0.52432	-0.00029375	-0.91461	-0.0005124	-1.4389	-0.00080615	560.243412714747	28.277	0.80723	28.277	28.088	28.895	0					31	15	3	0	0	0	0.73189	1	8817	8817		7.1017	0.89594	1	5108700	+		42062	25432	30914	31163	40965	40965					-0.08086747648076198
QVTRIRLYQRF	11	Unmodified	_QVTRIRLYQRF_					0	0	0			REV__nc|ENSG00000243989|Q03154-2|ACY1	REV__nc|ENSG00000243989|Q03154-2|ACY1	MSMS	A375_MHC_IP_R2	2	740.2355346679688	2	740.430784	1478.84702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.31	1	130.52	130.02	131.02	0.2142								0	0	0	0.16258	1	51215	51215		5.2969	0.39987	1		+		42063	22816	30915	31164	40966	40966					0.12674597182422076
QVTRYRNG	8	Unmodified	_QVTRYRNG_					0	0	0		nc|ENSG00000178233|Q8IW70-2|TMEM151B;ENSG00000178233|ENST00000451188|TMEM151B	nc|ENSG00000178233|Q8IW70-2|TMEM151B	nc|ENSG00000178233|Q8IW70-2|TMEM151B	MULTI-MSMS	A375_MHC_IP_R2	2	994.4681396484375	1	993.522453	992.515176	0.023934	2.3779E-05	2.2793	0.0022645	2.3032	0.0022883	993.524569356209	126.81	0.3549	127.08	126.9	127.26	0.26592					14	6	3	0	0	0	0.7766	1	49697	49697		7.2892	0.56607	1	60041000			42064	8147	30916	31165	40967	40967					0.01861937217756804
QVTSHQRGAH	10	Unmodified	_QVTSHQRGAH_					0	0	0			REV__ENST00000607332.1_1_6:100016396-100016693:+|nuORF	REV__ENST00000607332.1_1_6:100016396-100016693:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	562.1824340820312	2	560.783953	1119.55335	-0.33003	-0.00018508	-0.90777	-0.00050906	-1.2378	-0.00069414	560.7851630382912	54.407	0.90965	54.407	53.912	54.822	0					82	17	6	0	0	0	0.69833	1	19480	19480		13.042	0.80181	1	34842000	+		42065	26549	30917	31166	40968	40968					-0.0016417686756540206
QVTSHQRGAH	10	Unmodified	_QVTSHQRGAH_					0	0	0			REV__ENST00000607332.1_1_6:100016396-100016693:+|nuORF	REV__ENST00000607332.1_1_6:100016396-100016693:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	562.1820678710938	2	560.783953	1119.55335	-1.0659	-0.00059773	-0.21753	-0.00012199	-1.2834	-0.00071972	560.7854897007071	53.717	1.1229	54.468	54.097	55.22	0.75105					81	21	6	0	0	0	0.68638	1	20331	20331		14.405	1.8738	1	30114000	+		42066	26549	30917	31166	40969	40969					-0.0016417686756540206
QVVDVPDP	8	Unmodified	_QVVDVPDP_					0	0	0		ENSG00000086967|ENST00000357701|MYBPC2	ENSG00000086967|ENST00000357701|MYBPC2	ENSG00000086967|ENST00000357701|MYBPC2	MULTI-SECPEP	A375_MHC_IP_R1	1	868.9096069335938	1	868.441074	867.433798	-0.14007	-0.00012164	-3.2222	-0.0027983	-3.3623	-0.0029199	868.4354361813542	117.79	0.15298	117.79	117.71	117.87	0					4	2	2	0	0	0	0.91495	1	43283	43283		12.532	4.6214	1	4117400			42067	1848	30918	31167	40970	40970					-0.005221832648544478
QVVELEQHV	9	Unmodified	_QVVELEQHV_					0	0	0		ENST00000371335.4_1_X:119572500-119572653:-|nuORF	ENST00000371335.4_1_X:119572500-119572653:-|nuORF	ENST00000371335.4_1_X:119572500-119572653:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	541.23681640625	2	540.787838	1079.56112	-0.53538	-0.00028953	1.1048	0.00059747	0.56943	0.00030794	540.7882031570572	81.914	0.40445	81.914	81.607	82.011	0					13	7	3	0	0	0	0.38603	1	29918	29918		25.399	0.72543	1	1138400			42068	11172	30919	31168	40971	40971					0.024525376093151863
QVVKHVRRHH	10	Unmodified	_QVVKHVRRHH_					0	0	0		ENST00000433921.5_1_2:219503064-219516433:-|nuORF;nc|ENSG00000115568|P52746|ZNF142;ENSG00000115568|ENST00000411696|ZNF142	ENST00000433921.5_1_2:219503064-219516433:-|nuORF	ENST00000433921.5_1_2:219503064-219516433:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	648.7816162109375	2	648.381429	1294.7483	-0.49072	-0.00031817	1.08	0.00070024	0.58926	0.00038207	648.3823589360454	143.04	0.50529	143.07	142.79	143.29	0.030731					15	9	2	0	0	0	0.72378	1	55921	55921		1.6526	0.17072	1	1174900			42069	3322	30920	31169	40972	40972					0.11272038728066036
QVVKHVRRHH	10	Unmodified	_QVVKHVRRHH_					0	0	0		ENST00000433921.5_1_2:219503064-219516433:-|nuORF;nc|ENSG00000115568|P52746|ZNF142;ENSG00000115568|ENST00000411696|ZNF142	ENST00000433921.5_1_2:219503064-219516433:-|nuORF	ENST00000433921.5_1_2:219503064-219516433:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	648.381429	1294.7483	-0.67848	-0.00043991	1.5177	0.00098406	0.83924	0.00054415	648.3826375072734	143.02	0.55551	143.02	142.74	143.29	0	-0.026987	0.00042143	NaN	1.6526	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1633300			42070	3322	30920	31169							0.11272038728066036
QVVKHVRRHH	10	Unmodified	_QVVKHVRRHH_					0	0	0		ENST00000433921.5_1_2:219503064-219516433:-|nuORF;nc|ENSG00000115568|P52746|ZNF142;ENSG00000115568|ENST00000411696|ZNF142	ENST00000433921.5_1_2:219503064-219516433:-|nuORF	ENST00000433921.5_1_2:219503064-219516433:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	648.381429	1294.7483	-0.49072	-0.00031817	1.08	0.00070024	0.58926	0.00038207	648.3823589360454	143.04	0.50529	143.07	142.79	143.29	0.030731	0.026987	-0.00014621	NaN	1.6526	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1174900			42071	3322	30920	31169							0.11272038728066036
QVVLDIHPFR	10	Unmodified	_QVVLDIHPFR_					0	0	0			REV__ENSG00000135842|ENST00000367511|NIBAN1	REV__ENSG00000135842|ENST00000367511|NIBAN1	MULTI-SECPEP	A375_MHC_IP_R1	1	409.2923889160156	3	408.568024	1222.68224	-0.030282	-1.2372E-05	-1.648	-0.00067334	-1.6783	-0.00068571	408.56743236818465	56.676	0.25496	56.676	56.498	56.753	0					6	4	2	0	0	0	0.92832	1	20277	20277		8.4443	5.8131	1	1194300	+		42072	18891	30921	31170	40973	40973					0.07980785042627758
QVVMTPEIGY	10	Unmodified	_QVVMTPEIGY_					0	0	0			REV__nc|ENSG00000033178|A0AVT1-2|UBA6	REV__nc|ENSG00000033178|A0AVT1-2|UBA6	MULTI-SECPEP	A375_MHC_IP_R2	2	568.1822509765625	2	568.78645	1135.55835	-0.27263	-0.00015507	-0.9709	-0.00055224	-1.2435	-0.00070731	568.7859476034207	64.477	0.86451	65.218	64.496	65.361	0.74022					26	16	2	0	0	0	0.85226	1	24414	24414		14.838	0	1	1606600	+		42073	16307	30922	31171	40974	40974					-0.004010538398460994
QVVNSSAM	8	Unmodified	_QVVNSSAM_					0	0	0		ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	MSMS	A375_MHC_IP_R2	2	418.163818359375	2	418.202553	834.390553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.518	1	44.29	43.79	44.79	0.7724								0	0	0	0.16876	1	16215	16215		10.183	0	1				42074	9841	30923	31172	40975	40975					-0.03326696313786215
QVVQALFEDT	10	Unmodified	_QVVQALFEDT_					0	0	0		nc|ENSG00000133962|Q9H7T0-2|CATSPERB;ENSG00000133962|ENST00000256343|CATSPERB	nc|ENSG00000133962|Q9H7T0-2|CATSPERB	nc|ENSG00000133962|Q9H7T0-2|CATSPERB	MULTI-SECPEP	A375_MHC_IP_R1	1	575.7039794921875	2	575.292953	1148.57135	-0.20567	-0.00011832	-0.57684	-0.00033185	-0.78251	-0.00045017	575.2923980527307	34.758	0.40429	34.758	34.456	34.861	0					12	7	3	0	0	0	0.90513	1	11386	11386		8.1555	4.2111	1	5321100			42075	4538	30924	31173	40976	40976					0.0030110054387932905
QVVSSKKK	8	Unmodified	_QVVSSKKK_					0	0	0		SP140|p.E534K|1|0.4|ENSG00000079263|chr2:230285787-230285787|G/A|missense_variant	SP140|p.E534K|1|0.4|ENSG00000079263|chr2:230285787-230285787|G/A|missense_variant	SP140|p.E534K|1|0.4|ENSG00000079263|chr2:230285787-230285787|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	452.33251953125	2	452.284734	902.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.66	1	141.7	141.2	142.2	0.04216								0	0	0	0.16876	1	55399	55399		0.69038	0	1				42076	29225	30925	31174	40977	40977					0.09974064168466157
QVWLFVFFFLK	11	Unmodified	_QVWLFVFFFLK_					0	0	0			REV__ENST00000379375.5_1_6:12290782-12290878:+|nuORF	REV__ENST00000379375.5_1_6:12290782-12290878:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	491.6297912597656	3	491.947953	1472.82203	-0.53337	-0.00026239	0.8207	0.00040374	0.28732	0.00014135	491.9485708319673	77.603	0.25201	78.346	78.216	78.468	0.74293					9	4	3	0	0	0	1.0005	1	29455	29455		1.1098	0.096179	1	1579200	+		42077	24196	30926	31175	40978	40978					0.10453149327167921
QVWTWTVPMV	10	Unmodified	_QVWTWTVPMV_					0	0	0			REV__ENST00000606288.1_1_5:480523-480634:+|nuORF	REV__ENST00000606288.1_1_5:480523-480634:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	416.5885925292969	3	416.214482	1245.62162	-0.42897	-0.00017854	1.8261	0.00076003	1.3971	0.00058149	416.2154216802395	34.097	0.20161	34.85	34.702	34.904	0.75225					5	3	2	0	0	0	0.7086	1	12285	12285		8.4443	0.49891	1	2207000	+		42078	26539	30927	31176	40979	40979					0.008629316680526244
QVYAQRVDY	9	Unmodified	_QVYAQRVDY_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	A375_MHC_IP_R1	1	571.6539306640625	2	571.285463	1140.55637	-0.47428	-0.00027095	-0.30446	-0.00017393	-0.77874	-0.00044488	571.2849163980392	32.878	0.30507	32.878	32.734	33.04	0					7	5	2	0	0	0	0.75466	1	10640	10640		4.3292	0	1	1350700	+		42079	19300	30928	31177	40980	40980					-0.008283465334216089
QVYRLFLV	8	Unmodified	_QVYRLFLV_					0	0	0		nc|ENSG00000196352|P08174-2|CD55;nc|ENSG00000196352|P08174-5|CD55	nc|ENSG00000196352|P08174-2|CD55	nc|ENSG00000196352|P08174-2|CD55	MULTI-SECPEP	A375_MHC_IP_R2	2	518.6886596679688	2	519.310752	1036.60695	-0.97786	-0.00050781	-2.9339	-0.0015236	-3.9117	-0.0020314	519.3094005864804	58.344	0.81008	59.093	58.477	59.287	0.74894					17	15	2	0	0	0	0.97144	1	21876	21876		5.2307	2.6532	1	2041400			42080	14834	30929	31178	40981	40981					0.09011227582209358
QWAIHPTFNLK	11	Unmodified	_QWAIHPTFNLK_					0	0	0		ENSG00000181481|ENST00000328381|RNF135	ENSG00000181481|ENST00000328381|RNF135	ENSG00000181481|ENST00000328381|RNF135	MULTI-SECPEP	A375_MHC_IP_R1	1	452.33282470703125	3	452.247062	1353.71936	-0.42461	-0.00019203	-0.52084	-0.00023555	-0.94545	-0.00042758	452.24683883119656	132.04	0.35236	132.04	131.78	132.13	0					8	6	2	0	0	0	1.001	1	50862	50862		0.50596	0.051438	1	2061200			42081	8349	30930	31179	40982	40982					0.056644565883971154
QWASAGPPP	9	Unmodified	_QWASAGPPP_					0	0	0		nc|ENSG00000167632|Q96Q05-2|TRAPPC9	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	MSMS	A375_MHC_IP_R2	2	455.6477966308594	2	455.72451	909.434466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.457	1	55.208	54.708	55.708	0.75075								0	0	0	0.15486	1	20549	20549		9.3474	4.1168	1				42082	14749	30931	31180	40983	40983					-0.023873438251484913
QWDDEEEEP	9	Unmodified	_QWDDEEEEP_					0	0	0			REV__ENSG00000041802|ENST00000265245|LSG1	REV__ENSG00000041802|ENST00000265245|LSG1	MSMS	A375_MHC_IP_R1	1	588.7833862304688	2	588.720015	1175.42548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.87	1	148.87	148.37	149.37	0								0	0	0	0.15486	1	56837	56837		0.6015	0	1		+		42083	16343	30932	31181	40984	40984					-0.15521826762824276
QWDFPVELCC	10	Unmodified	_QWDFPVELCC_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11;ENST00000504526.1_1_4:184580477-184587420:+|nuORF	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	MSMS	A375_MHC_IP_R2	2	620.2689208984375	2	620.262284	1238.51002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.49	1	131.68	131.18	132.18	0.18953								0	0	0	0.1552	1	51725	51725		3.9444	1.8846	1				42084	7316	30933	31182	40985	40985					-0.09969870751365306
QWDWDDFSYE	10	Unmodified	_QWDWDDFSYE_					0	0	0			REV__TEX14|p.T1009Gfs*8|1|0.04|ENSG00000121101|chr17:58585864-58585865|-/CATTGTTGCC|frameshift_variant	REV__TEX14|p.T1009Gfs*8|1|0.04|ENSG00000121101|chr17:58585864-58585865|-/CATTGTTGCC|frameshift_variant	MSMS	A375_MHC_IP_R1	1	695.8314208984375	2	695.764757	1389.51496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.31	1	146.31	145.81	146.81	0								0	0	0	0.15629	1	55983	55983		0.40072	0	1		+		42085	18148	30934	31183	40986	40986					-0.16421572083413594
QWEQESFY	8	Unmodified	_QWEQESFY_					0	0	0			REV__ENSG00000197362|ENST00000491431|ZNF786	REV__ENSG00000197362|ENST00000491431|ZNF786	MULTI-MSMS	A375_MHC_IP_R2	2	559.2059326171875	2	558.735271	1115.45599	-0.64493	-0.00036034	-0.64588	-0.00036087	-1.2908	-0.00072122	558.7340446610139	63.23	1.4687	63.972	63.333	64.802	0.74223					61	28	5	0	0	0	0.72008	1	23946	23946		28.487	3.0875	1	3804400	+		42086	22281	30935	31184	40987	40987					-0.09712003587083018
QWEVLLGFLP	10	Unmodified	_QWEVLLGFLP_					0	0	0		ENST00000557810.5_1_14:24584043-24584304:+|nuORF	ENST00000557810.5_1_14:24584043-24584304:+|nuORF	ENST00000557810.5_1_14:24584043-24584304:+|nuORF	MSMS	A375_MHC_IP_R2	2	601.2868041992188	2	601.334424	1200.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.23	1	149.25	148.75	149.75	0.018585								0	0	0	0.15585	1	57927	57927		1.8442	0.19162	1				42087	13458	30936	31185	40988	40988					0.06199462062568273
QWFKEQNNIQW	11	Unmodified	_QWFKEQNNIQW_					0	0	0			REV__FOXR2|p.S189F|1|0.45|ENSG00000189299|chrX:55624277-55624277|C/T|missense_variant	REV__FOXR2|p.S189F|1|0.45|ENSG00000189299|chrX:55624277-55624277|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	507.6740417480469	3	507.58088	1519.72081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.304	1	57.304	56.804	57.804	0								0	0	0	0.16309	1	20552	20552		2.6312	1.3016	1		+		42088	26646	30937	31186	40989	40989					-0.018259541134739266
QWGFSSLHE	9	Unmodified	_QWGFSSLHE_					0	0	0		nc|ENSG00000114626|Q969K4-4|ABTB1	nc|ENSG00000114626|Q969K4-4|ABTB1	nc|ENSG00000114626|Q969K4-4|ABTB1	MULTI-SECPEP	A375_MHC_IP_R1	1	545.035888671875	2	545.751256	1089.48796	-0.24897	-0.00013588	-0.50457	-0.00027537	-0.75354	-0.00041124	545.7510009487183	49.684	0.61095	49.684	49.387	49.998	0					26	11	3	0	0	0	0.67483	1	17605	17605		10.074	0	1	5030800			42089	14556	30938	31187	40990	40990					-0.053205911132636174
QWGGWKRWRRR	11	Unmodified	_QWGGWKRWRRR_					0	0	0			REV__ENST00000502692.5_1_11:66328782-66328953:+|nuORF	REV__ENST00000502692.5_1_11:66328782-66328953:+|nuORF	MSMS	A375_MHC_IP_R1	1	524.6964721679688	3	524.623748	1570.84942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.238	1	97.238	96.738	97.738	0								0	0	0	0.16313	1	35727	35727		2.4348	1.22	1		+		42090	25503	30939	31188	40991	40991					0.08682490430737744
QWHLALFIHHL	11	Unmodified	_QWHLALFIHHL_					0	0	0		ENST00000511685.5_2_4:183522223-183549997:+|nuORF	ENST00000511685.5_2_4:183522223-183549997:+|nuORF	ENST00000511685.5_2_4:183522223-183549997:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	472.68316650390625	3	472.262935	1413.76697	-0.67031	-0.00031656	0.50037	0.00023631	-0.16994	-8.0255E-05	472.2630955878071	132.37	0.70886	132.37	132.08	132.79	0					29	13	3	0	0	0	1.0014	1	51100	51100		0.50596	0.50596	1	4062000			42091	12911	30940	31189	40992	40992					0.07664155579254839
QWHLALFIHHL	11	Unmodified	_QWHLALFIHHL_					0	0	0		ENST00000511685.5_2_4:183522223-183549997:+|nuORF	ENST00000511685.5_2_4:183522223-183549997:+|nuORF	ENST00000511685.5_2_4:183522223-183549997:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	472.262935	1413.76697	-0.53462	-0.00025248	0.39849	0.00018819	-0.13614	-6.4292E-05	472.2630172490329	132.25	0.81439	132.44	132.05	132.87	0.18953	0.036808	-7.1947E-05	NaN	0.50596	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3259300			42092	12911	30940	31189							0.07664155579254839
QWHLRRWWRPV	11	Unmodified	_QWHLRRWWRPV_					0	0	0			REV__ENST00000431361.1_1_20:61432246-61432384:-|nuORF	REV__ENST00000431361.1_1_20:61432246-61432384:-|nuORF	MSMS	A375_MHC_IP_R1	1	810.4506225585938	2	810.44456	1618.87457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.35	1	125.35	124.85	125.85	0								0	0	0	0.16334	1	47654	47654		1.3295	0.25807	1		+		42093	24703	30941	31190	40993	40993					0.089885452333192
QWKAELSSK	9	Unmodified	_QWKAELSSK_					0	0	0			REV__nc|ENSG00000135423|Q9UI32-2|GLS2	REV__nc|ENSG00000135423|Q9UI32-2|GLS2	MULTI-MSMS	A375_MHC_IP_R1	1	359.4284362792969	3	359.529346	1075.56621	0.12227	4.3961E-05	-0.63208	-0.00022725	-0.50981	-0.00018329	359.52914124186793	33.424	0.60851	33.424	33.14	33.748	0					22	11	3	0	0	0	0.74477	1	10810	10810		2.9952	0.49676	1	7086300	+		42094	27240	30942	31191	40994	40994					0.03144841471953441
QWKFIPEKKLK	11	Unmodified	_QWKFIPEKKLK_					0	0	0		EML5|p.R597K|1|0.77|ENSG00000165521|chr14:88706294-88706294|C/T|missense_variant	EML5|p.R597K|1|0.77|ENSG00000165521|chr14:88706294-88706294|C/T|missense_variant	EML5|p.R597K|1|0.77|ENSG00000165521|chr14:88706294-88706294|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	722.904541015625	2	722.937379	1443.86021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.82	1	145.84	145.34	146.34	0.021408								0	0	0	0.16355	1	56871	56871		0.26902	0.26902	1				42095	836	30943	31192	40995	40995					0.15603035241815633
QWKMRRNQFWI	11	Unmodified	_QWKMRRNQFWI_					0	0	0			REV__DBX2|p.R242Q|1|0.46|ENSG00000185610|chr12:45016581-45016581|C/T|missense_variant	REV__DBX2|p.R242Q|1|0.46|ENSG00000185610|chr12:45016581-45016581|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	796.87451171875	2	796.916987	1591.81942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.64	1	135.64	135.14	136.14	0								0	0	0	0.16353	1	52279	52279		0.35063	0.043601	1		+		42096	15967	30944	31193	40996	40996					0.04718370650562065
QWKTVRQKKTR	11	Unmodified	_QWKTVRQKKTR_					0	0	0			REV__ENSG00000188827|ENST00000294008|SLX4	REV__ENSG00000188827|ENST00000294008|SLX4	MULTI-SECPEP	A375_MHC_IP_R2	2	729.844970703125	2	729.936234	1457.85791	-0.65451	-0.00047775	-0.75397	-0.00055035	-1.4085	-0.0010281	729.9357352163346	136.12	0.97006	136.24	135.69	136.66	0.11133					26	18	2	0	0	0	1.0014	1	53617	53617		0.35063	0	1	1113200	+		42097	22118	30945	31194	40997	40997					0.14729999556698203
QWLMILIIL	9	Unmodified	_QWLMILIIL_					0	0	0			REV__ENST00000520579.5_1_5:149495328-149514444:-|nuORF	REV__ENST00000520579.5_1_5:149495328-149514444:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	381.9715270996094	3	381.571718	1141.69332	-0.38482	-0.00014684	0.011549	4.4067E-06	-0.37327	-0.00014243	381.5717181697213	58.632	0.4568	59.381	59.135	59.592	0.74895					13	8	2	0	0	0	0.64971	1	22210	22210		11.495	0	1	1613500	+		42098	17799	30946	31195	40998	40998					0.12814471092588064
QWLPIFIKFRT	11	Unmodified	_QWLPIFIKFRT_					0	0	0		HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|439|3|anti-sense	HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|439|3|anti-sense	HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|439|3|anti-sense	MSMS	A375_MHC_IP_R1	1	724.8516845703125	2	724.924272	1447.83399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.8	1	147.8	147.3	148.3	0								0	0	0	0.16353	1	56460	56460		0.35063	0	1				42099	14117	30947	31196	40999	40999					0.1279876607031838
QWLRDHLK	8	Unmodified	_QWLRDHLK_					0	0	0			REV__NRG1|p.R279W|1|0.46|ENSG00000157168|chr8:32756434-32756434|C/T|missense_variant	REV__NRG1|p.R279W|1|0.46|ENSG00000157168|chr8:32756434-32756434|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	366.64495849609375	3	365.873447	1094.59851	0.28612	0.00010468	-0.19556	-7.155E-05	0.090561	3.3134E-05	365.8733132201145	37.192	0.55826	37.192	36.895	37.454	0					15	10	2	0	0	0	0.95423	1	12540	12540		5.7319	0	1	2378000	+		42100	27630	30948	31197	41000	41000					0.054996736655766654
QWLRDVYLRTF	11	Unmodified	_QWLRDVYLRTF_					0	0	0			REV__LRRC66|p.P399L|1|0.29|ENSG00000188993|chr4:51995826-51995826|G/A|missense_variant	REV__LRRC66|p.P399L|1|0.29|ENSG00000188993|chr4:51995826-51995826|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	499.6526794433594	3	499.605137	1495.79358	-0.32332	-0.00016153	-0.66893	-0.0003342	-0.99225	-0.00049573	499.6047563367914	63.352	0.56334	63.352	63.069	63.632	0					17	10	2	0	0	0	0.73779	1	22958	22958		0.50596	0.051438	1	7676100	+		42101	26954	30949	31198	41001	41001					0.06551799679891701
QWLRRHPKPFR	11	Unmodified	_QWLRRHPKPFR_					0	0	0		ENSG00000175699|ENST00000636493|CCDC197	ENSG00000175699|ENST00000636493|CCDC197	ENSG00000175699|ENST00000636493|CCDC197	MULTI-MSMS	A375_MHC_IP_R2	2	760.8613891601562	2	760.939111	1519.86367	-0.82928	-0.00063103	1.9856	0.0015109	1.1563	0.00087988	761.4407256738285	133.38	0.25365	133.54	133.35	133.6	0.16487					6	4	2	0	0	0	0.73886	1	52473	52473		1.3295	1.0225	1	2243600			42102	7976	30950	31199	41002	41002					0.12453142859021682
QWLSRRVF	8	Unmodified	_QWLSRRVF_					0	0	0			REV__ENST00000558861.1_2_15:99792175-99796202:+|nuORF	REV__ENST00000558861.1_2_15:99792175-99796202:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	364.9228820800781	3	364.541809	1090.6036	0.32997	0.00012029	-2.9721	-0.0010834	-2.6421	-0.00096316	364.54077204639594	42.411	0.40413	42.411	42.183	42.587	0					10	7	2	0	0	0	0.972	1	14732	14732		8.1555	1.9637	1	1347500	+		42103	23630	30951	31200	41003	41003					0.0619197752821492
QWNRQRQLSLM	11	Unmodified	_QWNRQRQLSLM_					0	0	0			REV__ENST00000404424.5_1_2:29336886-29336964:+|nuORF	REV__ENST00000404424.5_1_2:29336886-29336964:+|nuORF	MSMS	A375_MHC_IP_R2	2	730.3348388671875	2	730.382977	1458.7514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.07	1	133.23	132.73	133.73	0.16487								0	0	0	0.16297	1	52352	52352		3.2813	0.28607	1		+		42104	24426	30952	31201	41004	41004					0.04037500999925214
QWPLPRVA	8	Unmodified	_QWPLPRVA_					0	0	0			REV__ENSG00000197766|ENST00000327726|CFD	REV__ENSG00000197766|ENST00000327726|CFD	MSMS	A375_MHC_IP_R2	2	483.67791748046875	2	483.779619	965.544686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.69	1	130.9	130.4	131.4	0.2142								0	0	0	0.16876	1	51397	51397		5.2307	2.3415	1		+		42105	22311	30953	31202	41005	41005					0.06053501233884617
QWQQRRWRQQE	11	Unmodified	_QWQQRRWRQQE_					0	0	0		ENST00000416426.6_2_17:55729477-55752284:+|nuORF	ENST00000416426.6_2_17:55729477-55752284:+|nuORF	ENST00000416426.6_2_17:55729477-55752284:+|nuORF	MSMS	A375_MHC_IP_R2	2	543.7011108398438	3	543.609945	1627.808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.451	1	85.187	84.687	85.687	0.73601								0	0	0	0.16351	1	32103	32103		0.45452	0.35968	1				42106	11689	30954	31203	41006	41006					0.01921264880797935
QWQQSPCIA	9	Unmodified	_QWQQSPCIA_					0	0	0		ENST00000590901.5_1_18:47808965-47812340:-|nuORF;ENSG00000154832|ENST00000285106|CXXC1;nc|ENSG00000154832|Q9P0U4-2|CXXC1;ENST00000590234.5_1_18:47810059-47811374:-|nuORF	ENST00000590901.5_1_18:47808965-47812340:-|nuORF	ENST00000590901.5_1_18:47808965-47812340:-|nuORF	MSMS	A375_MHC_IP_R1	1	354.09637451171875	3	354.167531	1059.48076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.99	1	103.99	103.49	104.49	0								0	0	0	0.15486	1	38187	38187		1.1933	0.12188	1				42107	6112	30955	31204	41007	41007					-0.046596469853511735
QWQRISEWKKS	11	Unmodified	_QWQRISEWKKS_					0	0	0		ENST00000556551.2_1_14:74325599-74340738:+|nuORF	ENST00000556551.2_1_14:74325599-74340738:+|nuORF	ENST00000556551.2_1_14:74325599-74340738:+|nuORF	MSMS	A375_MHC_IP_R1	1	492.6793518066406	3	492.596642	1474.7681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.536	1	34.536	34.036	35.036	0								0	0	0	0.16247	1	11394	11394		5.8681	3.4334	1				42108	13441	30956	31205	41008	41008					0.04970325157478328
QWQSVIRIY	9	Unmodified	_QWQSVIRIY_					0	0	0		ENSG00000157796|ENST00000399820|WDR19;ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENSG00000157796|ENST00000399820|WDR19	ENSG00000157796|ENST00000399820|WDR19	MULTI-SECPEP	A375_MHC_IP_R1	1	596.1146850585938	2	596.827298	1191.64004	-0.34296	-0.00020469	0.022005	1.3133E-05	-0.32095	-0.00019155	596.8272683456385	101.5	0.60652	101.5	101.24	101.85	0					29	11	3	0	0	0	0.775	1	37339	37339		6.7232	0.51738	1	4523100			42109	6266	30957	31206	41009	41009					0.05188809634296376
QWRALEKERKK	11	Unmodified	_QWRALEKERKK_					0	0	0		nc|ENSG00000180336|A2RUB1-1|MEIOC;nc|ENSG00000180336|A2RUB1-2|MEIOC;nc|ENSG00000180336|A2RUB1-5|MEIOC;ENSG00000180336|ENST00000409122|MEIOC	nc|ENSG00000180336|A2RUB1-1|MEIOC	nc|ENSG00000180336|A2RUB1-1|MEIOC	MULTI-MSMS	A375_MHC_IP_R1	1	736.8264770507812	2	736.428242	1470.84193	-0.80699	-0.00059429	-1.0517	-0.00077453	-1.8587	-0.0013688	736.4277494685281	133.95	0.45706	133.95	133.66	134.12	0					16	8	3	0	0	0	0.73795	1	51683	51683		1.3295	0.13619	1	3115800			42110	8289	30958	31207	41010	41010					0.12534293319799872
QWRARRWRWWR	11	Unmodified	_QWRARRWRWWR_					0	0	0			REV__nc|ENSG00000171160|Q8NDC4-2|MORN4	REV__nc|ENSG00000171160|Q8NDC4-2|MORN4	MULTI-MSMS	A375_MHC_IP_R2	2	872.875244140625	2	871.971808	1741.92906	-0.33754	-0.00029433	3.3739	0.0029419	3.0364	0.0026476	872.4760371292983	94.487	0.20247	95.232	95.122	95.324	0.74474					7	3	3	0	0	0	0.73924	1	35920	35920		0	0	1	1720300	+		42111	27355	30959	31208	41011	41011					0.08777557104735934
QWRARRWRWWR	11	Unmodified	_QWRARRWRWWR_					0	0	0			REV__nc|ENSG00000171160|Q8NDC4-2|MORN4	REV__nc|ENSG00000171160|Q8NDC4-2|MORN4	MSMS	A375_MHC_IP_R2	2	581.7511596679688	3	581.650297	1741.92906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.1	1	149.12	148.62	149.62	0.018707								0	0	0	0.1636	1	57882	57882		0	0	1		+		42112	27355	30959	31208	41012	41012					0.08777557104735934
QWRARRWRWWR	11	Unmodified	_QWRARRWRWWR_					0	0	0			REV__nc|ENSG00000171160|Q8NDC4-2|MORN4	REV__nc|ENSG00000171160|Q8NDC4-2|MORN4	MULTI-SECPEP	A375_MHC_IP_R2	2	871.371337890625	2	871.971808	1741.92906	-0.5446	-0.00047488	3.8757	0.0033795	3.3311	0.0029046	871.9752598102853	131.6	0.20355	131.79	131.65	131.85	0.18953					6	3	2	0	0	0	1.001	1	51781	51781		0.26902	0	1	2597600	+		42113	27355	30959	31208	41013	41013					0.08777557104735934
QWRRRQRRRVR	11	Unmodified	_QWRRRQRRRVR_					0	0	0		ENST00000370332.5_1_1:92949124-92949509:-|nuORF	ENST00000370332.5_1_1:92949124-92949509:-|nuORF	ENST00000370332.5_1_1:92949124-92949509:-|nuORF	MSMS	A375_MHC_IP_R1	1	826.9981079101562	2	826.998888	1651.98322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.37	1	144.37	143.87	144.87	0								0	0	0	0.1636	1	55364	55364		0	0	1				42114	11149	30960	31209	41014	41014					0.18331149256300705
QWRRRRRPQQP	11	Unmodified	_QWRRRRRPQQP_					0	0	0		ENST00000295206.6_1_2:119600812-119604160:-|nuORF	ENST00000295206.6_1_2:119600812-119604160:-|nuORF	ENST00000295206.6_1_2:119600812-119604160:-|nuORF	MSMS	A375_MHC_IP_R1	1	782.7702026367188	2	782.445623	1562.87669	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.385	1	96.385	95.885	96.885	0								0	0	0	0.16351	1	35423	35423		1.3295	1.0225	1				42115	10494	30961	31210	41015	41015					0.1177697397117754
QWRSTKRSC	9	Unmodified	_QWRSTKRSC_					0	0	0			REV__ENST00000455357.5_1_2:231440642-231440699:-|nuORF	REV__ENST00000455357.5_1_2:231440642-231440699:-|nuORF	MSMS	A375_MHC_IP_R1	1	576.2430419921875	2	576.290556	1150.56656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.49	1	127.49	126.99	127.99	0								0	0	0	0.15486	1	48882	48882		4.3292	0.38484	1		+		42116	24927	30962	31211	41016	41016					-0.0027006207983504282
QWRSTKRSC	9	Unmodified	_QWRSTKRSC_					0	0	0			REV__ENST00000455357.5_1_2:231440642-231440699:-|nuORF	REV__ENST00000455357.5_1_2:231440642-231440699:-|nuORF	MSMS	A375_MHC_IP_R2	2	576.2428588867188	2	576.290556	1150.56656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.85	1	129.09	128.59	129.59	0.23946								0	0	0	0.15486	1	50623	50623		4.3292	0.38484	1		+		42117	24927	30962	31211	41017	41017					-0.0027006207983504282
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	481.68304443359375	3	481.283503	1440.82868	-0.62701	-0.00030177	0.34707	0.00016704	-0.27994	-0.00013473	481.2835908950248	132.67	1.3188	132.67	131.78	133.1	0					127	25	6	0	0	0	0.73795	4	50875	50875;51097;51222;51316		0.45452	0.45452	1	271420000	+		42118	23749	30963	31212	41018;41019;41020;41021	41018					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	721.8209228515625	2	721.421617	1440.82868	-0.81779	-0.00058997	0.46259	0.00033372	-0.3552	-0.00025625	721.4217969261664	132.67	1.3188	132.67	131.78	133.1	0					105	25	5	0	0	0	0.73795	1	51098	51098		1.3295	1.3295	1	194070000	+		42119	23749	30963	31212	41022	41022					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	481.68341064453125	3	481.283503	1440.82868	-0.64097	-0.00030849	0.33968	0.00016348	-0.30129	-0.000145	481.28362349651695	133.48	5.0027	133.48	133.1	138.1	0					347	97	6	0	0	0	0.73795	4	51534	51534;51751;51964;52176		0.45452	0.45452	1	602190000	+		42120	23749	30963	31212	41023;41024;41025;41026	41023					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	721.8212890625	2	721.421617	1440.82868	-0.83209	-0.00060028	0.35808	0.00025833	-0.474	-0.00034196	721.4216633561605	133.48	5.9644	133.48	133.1	139.06	0					266	116	6	0	0	0	0.73795	3	51535	51535;51902;52121		1.3295	1.3295	1	409550000	+		42121	23749	30963	31212	41027;41028;41029	41027					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	721.8204956054688	2	721.421617	1440.82868	-0.92521	-0.00066747	0.6408	0.00046228	-0.28441	-0.00020518	721.421515716601	148.73	1.9875	148.73	147.73	149.72	0					100	52	3	0	0	0	0.73897	1	56656	56656		0.35063	0.35063	1	651190	+		42122	23749	30963	31212	41030	41030					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	481.662353515625	3	481.283503	1440.82868	-0.52073	-0.00025062	0.11818	5.6878E-05	-0.40255	-0.00019374	481.283469814755	132.55	1.4226	132.74	131.75	133.17	0.18954					135	27	6	0	0	0	0.73647	5	51895	51851;51895;52081;52211;52305		1.1098	1.0149	1	285640000	+		42123	23749	30963	31212	41031;41032;41033;41034;41035	41032					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	722.9522705078125	2	721.421617	1440.82868	-0.72925	-0.0005261	0.29891	0.00021564	-0.43034	-0.00031046	721.4216695384648	132.55	1.3715	132.74	131.8	133.17	0.18953					126	26	6	0	0	0	0.73795	1	52037	52037		1.3295	1.3295	1	204670000	+		42124	23749	30963	31212	41036	41036					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	481.6831359863281	3	481.283503	1440.82868	-0.4903	-0.00023597	0.26318	0.00012667	-0.22711	-0.00010931	481.2835827603349	133.41	4.9979	133.58	133.04	138.04	0.16487					300	97	6	0	0	0	0.73647	4	52964	52523;52748;52964;53187		1.1098	1.1098	1	596420000	+		42125	23749	30963	31212	41037;41038;41039;41040	41039					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	721.820068359375	2	721.421617	1440.82868	-0.69712	-0.00050292	0.30562	0.00022048	-0.3915	-0.00028244	721.4216140477445	133.41	5.7596	133.58	133.09	138.85	0.16487					279	112	5	0	0	0	0.73647	5	52965	52524;52931;52965;53147;53570		2.7352	1.5419	1	388070000	+		42126	23749	30963	31212	41041;41042;41043;41044;41045	41043					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	481.68304443359375	3	481.283503	1440.82868	-0.37942	-0.00018261	0.20425	9.8303E-05	-0.17517	-8.4304E-05	481.28338843317096	138.99	2.0692	139.05	137.94	140.01	0.059906					99	40	4	0	0	0	0.73809	1	54273	54273		0.40827	0	1	4594900	+		42127	23749	30963	31212	41046	41046					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	721.8208618164062	2	721.421617	1440.82868	-0.58632	-0.00042299	-0.11636	-8.3945E-05	-0.70268	-0.00050693	721.4213494849193	141.72	1.6303	141.75	141.16	142.79	0.030731					45	31	2	0	0	0	0.73897	1	55379	55379		0.35063	0	1	1416200	+		42128	23749	30963	31212	41047	41047					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	481.662353515625	3	481.283503	1440.82868	-0.52073	-0.00025062	0.11818	5.6878E-05	-0.40255	-0.00019374	481.283469814755	132.55	1.4226	132.74	131.75	133.17	0.18954					135	27	6	0	0	0	0.99985	1	51895	51895		1.1098	1.1098	1	285640000	+		42129	23749	30963	31212	41048	41048					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	481.14678955078125	3	481.283503	1440.82868	-0.4903	-0.00023597	0.26318	0.00012667	-0.22711	-0.00010931	481.2835827603349	133.41	4.9979	133.58	133.04	138.04	0.16487					300	97	6	0	0	0	1.0008	1	53046	53046		0.45452	0.45452	1	596420000	+		42130	23749	30963	31212	41049	41049					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	721.7904052734375	2	721.421617	1440.82868	-0.72925	-0.0005261	0.29891	0.00021564	-0.43034	-0.00031046	721.4216695384648	132.55	1.3715	132.74	131.8	133.17	0.18953					126	26	6	0	0	0	1.0008	1	51910	51910		1.3295	1.3295	1	204670000	+		42131	23749	30963	31212	41050	41050					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	721.5858764648438	2	721.421617	1440.82868	-0.58632	-0.00042299	-0.11636	-8.3945E-05	-0.70268	-0.00050693	721.4213494849193	141.72	1.6303	141.75	141.16	142.79	0.030731					45	31	2	0	0	0	1.0008	1	55701	55701		1.3295	0.13619	1	1416200	+		42132	23749	30963	31212	41051	41051					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	721.820068359375	2	721.421617	1440.82868	-0.69712	-0.00050292	0.30562	0.00022048	-0.3915	-0.00028244	721.4216140477445	133.41	5.7596	133.58	133.09	138.85	0.16487					279	112	5	0	0	0	0.99985	1	52965	52965		2.7352	1.5419	1	388070000	+		42133	23749	30963	31212	41052	41052					0.12589900051102632
QWSTLIGG	8	Unmodified	_QWSTLIGG_					0	0	0			REV__nc|ENSG00000078795|Q9NZM6-2|PKD2L2	REV__nc|ENSG00000078795|Q9NZM6-2|PKD2L2	MSMS	A375_MHC_IP_R2	2	431.2880859375	2	431.226885	860.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.6	1	137.68	137.18	138.18	0.083969								0	0	0	0.16876	1	53999	53999		0.79363	0	1		+		42134	16718	30964	31213	41053	41053					0.003415403176404652
QWSWILQIT	9	Unmodified	_QWSWILQIT_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	MULTI-MSMS	A375_MHC_IP_R1	1	587.7276611328125	2	587.816399	1173.61824	-0.17491	-0.00010282	0.32085	0.0001886	0.14593	8.5782E-05	587.816454271314	93.334	1.0691	93.334	92.922	93.991	0					32	20	2	0	0	0	0.66474	1	34184	34184		14.838	8.1151	1	2407100			42135	2060	30965	31214	41054	41054					0.038380048857106885
QWVLQLKKPW	10	Unmodified	_QWVLQLKKPW_					0	0	0		ENST00000240100.6_1_8:29191910-29192249:-|nuORF	ENST00000240100.6_1_8:29191910-29192249:-|nuORF	ENST00000240100.6_1_8:29191910-29192249:-|nuORF	MSMS	A375_MHC_IP_R1	1	442.6610412597656	3	442.595802	1324.76558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.39	1	132.39	131.89	132.89	0								0	0	0	0.1562	1	51047	51047		0.69767	0	1				42136	10164	30966	31215	41055	41055					0.116185214905272
QWVQENVAA	9	Unmodified	_QWVQENVAA_					0	0	0		nc|ENSG00000087085|P22303-4|ACHE;ENSG00000087085|ENST00000241069|ACHE;nc|ENSG00000087085|P22303-2|ACHE;nc|ENSG00000087085|P22303-3|ACHE;ENST00000442452.1_1_7:100490234-100491508:-|nuORF	nc|ENSG00000087085|P22303-4|ACHE	nc|ENSG00000087085|P22303-4|ACHE	MULTI-MSMS	A375_MHC_IP_R2	2	521.7314453125	2	522.759081	1043.50361	-0.64008	-0.00033461	0.014797	7.7355E-06	-0.62528	-0.00032687	522.7588123189577	62.547	1.0139	63.289	62.774	63.788	0.74263					41	19	3	0	0	0	0.74157	1	23748	23748		3.2813	0.28607	1	2290600			42137	1853	30967	31216	41056	41056					-0.01640304596230635
QWVQLVDL	8	Unmodified	_QWVQLVDL_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	A375_MHC_IP_R1	1	501.6903381347656	2	500.776742	999.538931	-0.015591	-7.8077E-06	2.3628	0.0011833	2.3473	0.0011755	500.7768605469064	115.85	0.4578	115.85	115.53	115.99	0					18	8	3	0	0	0	0.77643	1	42532	42532		7.9102	0.62092	1	1173900			42138	3968	30968	31217	41057	41057					0.03914357931569157
QWVTTSFAQPC	11	Unmodified	_QWVTTSFAQPC_					0	0	0			REV__nc|ENSG00000170468|Q9H6W3-2|RIOX1	REV__nc|ENSG00000170468|Q9H6W3-2|RIOX1	MSMS	A375_MHC_IP_R2	2	634.2711181640625	2	634.29243	1266.57031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.08	1	143.11	142.61	143.61	0.030731								0	0	0	0.16249	1	55925	55925		5.7319	0	1		+		42139	20996	30969	31218	41058	41058					-0.0523143709665419
QWWYVRSHRDW	11	Unmodified	_QWWYVRSHRDW_					0	0	0		nc|ENSG00000132821|Q96N03-2|VSTM2L;ENSG00000132821|ENST00000373461|VSTM2L	nc|ENSG00000132821|Q96N03-2|VSTM2L	nc|ENSG00000132821|Q96N03-2|VSTM2L	MSMS	A375_MHC_IP_R2	2	809.8740234375	2	809.886741	1617.75893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.06	1	134.22	133.72	134.72	0.16487								0	0	0	0.16353	1	52739	52739		0.35063	0.043601	1				42140	4452	30970	31219	41059	41059					-0.025240234081820745
QWYGDQSL	8	Unmodified	_QWYGDQSL_					0	0	0			REV__nc|ENSG00000162706|Q8N126-2|CADM3	REV__nc|ENSG00000162706|Q8N126-2|CADM3	MULTI-SECPEP	A375_MHC_IP_R1	1	499.4605407714844	2	498.724707	995.43486	-0.35245	-0.00017578	-0.35153	-0.00017532	-0.70398	-0.00035109	498.72450913389713	59.746	0.50867	59.746	59.548	60.057	0					14	9	2	0	0	0	0.972	1	21595	21595		13.508	13.508	1	1162000	+		42141	27315	30971	31220	41060	41060					-0.06303968895952039
QYALANLTG	9	Unmodified	_QYALANLTG_					0	0	0		nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN;ENST00000491390.1_1_1:160325502-160326610:+|nuORF	nc|ENSG00000162736|Q92542-2|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	MULTI-MSMS	A375_MHC_IP_R2	2	475.6600036621094	2	475.750724	949.486896	-0.33152	-0.00015772	-0.18062	-8.5932E-05	-0.51214	-0.00024365	475.7506605908757	43.938	0.45366	44.707	44.43	44.883	0.7691					14	8	2	0	0	0	0.64808	1	16287	16287		11.64	0	1	2157200			42142	6585	30972	31221	41061	41061					0.010131945177931811
QYALANLTG	9	Unmodified	_QYALANLTG_					0	0	0		nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN;ENST00000491390.1_1_1:160325502-160326610:+|nuORF	nc|ENSG00000162736|Q92542-2|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	475.750724	949.486896	-0.012225	-5.8161E-06	-0.10342	-4.92E-05	-0.11564	-5.5016E-05	475.7507422069154	44.751	0.55927	44.751	44.42	44.98	0	0.021983	2.3313E-05	NaN	11.64	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1787400			42143	6585	30972	31221							0.010131945177931811
QYCQVRRGLG	10	Unmodified	_QYCQVRRGLG_					0	0	0		ENST00000474352.5_1_1:151341776-151342064:-|nuORF;ENST00000493560.5_1_1:151341776-151345168:-|nuORF	ENST00000474352.5_1_1:151341776-151342064:-|nuORF	ENST00000474352.5_1_1:151341776-151342064:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	393.6014404296875	3	393.87323	1178.59786	-0.26042	-0.00010257	-0.063634	-2.5064E-05	-0.32405	-0.00012764	393.87311526450037	38.314	0.86538	38.314	38.067	38.933	0					25	12	3	0	0	0	0.70496	1	12990	12990		5.7834	0	1	4430100			42144	12402	30973	31222	41062	41062					0.015705109542523132
QYDNGAYIL	9	Unmodified	_QYDNGAYIL_					0	0	0			REV__ENSG00000129657|ENST00000436233|SEC14L1	REV__ENSG00000129657|ENST00000436233|SEC14L1	MULTI-MSMS	A375_MHC_IP_R2	2	529.7900390625	2	528.753464	1055.49238	-0.44012	-0.00023272	-0.56252	-0.00029743	-1.0026	-0.00053015	528.7530816885262	68.916	0.86075	69.651	69.272	70.133	0.73511					40	16	4	0	0	0	0.2002	1	26111	26111		37.974	1.9298	1	12987000	+		42145	18503	30974	31223	41063	41063					-0.03315126690381476
QYDTVSITI	9	Unmodified	_QYDTVSITI_					0	0	0		L1M3_dup291|chr1:173794566-173795729:+|1.1839404940679334|0.3648644439828962|1.7|470.0|51|1|anti-sense	L1M3_dup291|chr1:173794566-173795729:+|1.1839404940679334|0.3648644439828962|1.7|470.0|51|1|anti-sense	L1M3_dup291|chr1:173794566-173795729:+|1.1839404940679334|0.3648644439828962|1.7|470.0|51|1|anti-sense	MULTI-MSMS	A375_MHC_IP_R1	1	520.226806640625	2	520.268947	1038.52334	-0.45696	-0.00023774	-0.20728	-0.00010784	-0.66424	-0.00034558	520.2687374204141	102.04	1.1635	102.04	101.7	102.86	0					50	22	4	0	0	0	0.51106	1	37689	37689		19.257	1.1106	1	9826400			42146	14250	30975	31224	41064	41064					0.005620266238565819
QYECQAVSSL	10	Unmodified	_QYECQAVSSL_					0	0	0		nc|ENSG00000147485|A1KZ92-2|PXDNL;ENSG00000147485|ENST00000356297|PXDNL	nc|ENSG00000147485|A1KZ92-2|PXDNL	nc|ENSG00000147485|A1KZ92-2|PXDNL	MSMS	A375_MHC_IP_R1	1	564.1980590820312	2	564.255514	1126.49647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.588	1	76.588	76.088	77.088	0								0	0	0	0.15158	1	27921	27921		14.838	3.198	1				42147	5688	30976	31225	41065	41065					-0.06171405258965024
QYEGVTETVY	10	Unmodified	_QYEGVTETVY_					0	0	0		ENSG00000158481|ENST00000368170|CD1C	ENSG00000158481|ENST00000368170|CD1C	ENSG00000158481|ENST00000368170|CD1C	MSMS	A375_MHC_IP_R1	1	594.7537231445312	2	594.774593	1187.53463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.247	1	56.247	55.747	56.747	0								0	0	0	0.15451	1	20146	20146		6.2058	0.47393	1				42148	6308	30977	31226	41066	41066					-0.05163196072658138
QYETCKIRT	9	Unmodified	_QYETCKIRT_					0	0	0		RGL1|p.N600Ffs*47|1|0.04|ENSG00000143344|chr1:183916494-183916495|AA/-|frameshift_variant;ENSG00000143344|ENST00000360851|RGL1;nc|ENSG00000143344|Q9NZL6-2|RGL1	RGL1|p.N600Ffs*47|1|0.04|ENSG00000143344|chr1:183916494-183916495|AA/-|frameshift_variant	RGL1|p.N600Ffs*47|1|0.04|ENSG00000143344|chr1:183916494-183916495|AA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	380.94482421875	3	381.193858	1140.55974	-0.072894	-2.7787E-05	-0.56983	-0.00021722	-0.64272	-0.000245	381.1931957799979	31.25	0.51056	31.968	31.669	32.18	0.71857					20	9	4	0	0	0	0.74412	1	11091	11091		10.151	1.1743	1	1895700			42149	5372	30978	31227	41067	41067					-0.004914197510970553
QYEWYVIPN	9	Unmodified	_QYEWYVIPN_					0	0	0			REV__ENST00000478333.1_1_6:137528098-137540521:-|nuORF	REV__ENST00000478333.1_1_6:137528098-137540521:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	405.2839050292969	3	404.529235	1210.56587	-0.6958	-0.00028147	-0.19686	-7.9637E-05	-0.89266	-0.00036111	404.52908487621534	24.017	0.60988	24.017	23.737	24.347	0					18	11	2	0	0	0	0.77948	1	6640	6640		6.6304	0	1	2988100	+		42150	16291	30979	31228	41068	41068					-0.03098578247909245
QYFKAVFDP	9	Unmodified	_QYFKAVFDP_					0	0	0			REV__ENSG00000179933|ENST00000319074|C14orf119	REV__ENSG00000179933|ENST00000319074|C14orf119	MULTI-MSMS	A375_MHC_IP_R2	2	558.275146484375	2	557.782025	1113.5495	-0.81041	-0.00045203	-0.30309	-0.00016906	-1.1135	-0.00062109	558.283713370248	80.892	0.96838	81.637	81.112	82.08	0.74474					25	18	2	0	0	0	0.55471	1	30634	30634		17.113	4.0704	1	3780300	+		42151	21588	30980	31229	41069	41069					-0.0027365941400603333
QYGGCMGNGNN	11	Unmodified	_QYGGCMGNGNN_					0	0	0		ENST00000540645.5_1_9:116823569-116838999:-|nuORF;ENSG00000106927|ENST00000265132|AMBP	ENST00000540645.5_1_9:116823569-116838999:-|nuORF	ENST00000540645.5_1_9:116823569-116838999:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	557.1900634765625	2	557.705665	1113.39678	-0.53411	-0.00029788	-2.2868	-0.0012754	-2.8209	-0.0015733	557.7050487413952	73.423	0.50787	73.423	73.132	73.64	0					13	9	2	0	0	0	0.73016	1	26768	26768		8.7454	0.83525	1	1186600			42152	2718	30981	31230	41070	41070					-0.15538546144580323
QYGKNLSQSQY	11	Unmodified	_QYGKNLSQSQY_					0	0	0		ENST00000438300.1_1_2:133070568-133076306:+|nuORF	ENST00000438300.1_1_2:133070568-133076306:+|nuORF	ENST00000438300.1_1_2:133070568-133076306:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	658.7171630859375	2	658.317491	1314.62043	-0.42667	-0.00028088	0.45594	0.00030015	0.02927	1.9269E-05	658.3177218851602	63.327	0.61407	63.327	62.966	63.58	0					23	11	4	0	0	0	0.62223	1	22859	22859		21.59	1.1756	1	5769300			42153	11947	30982	31231	41071	41071					-0.024296111671219478
QYGKNLSQSQY	11	Unmodified	_QYGKNLSQSQY_					0	0	0		ENST00000438300.1_1_2:133070568-133076306:+|nuORF	ENST00000438300.1_1_2:133070568-133076306:+|nuORF	ENST00000438300.1_1_2:133070568-133076306:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	658.317491	1314.62043	-0.96501	-0.00063529	0.20019	0.00013179	-0.76482	-0.00050349	658.3174168621492	62.616	0.50433	63.359	63.13	63.634	0.74263	0.015822	-0.00019609	NaN	21.59	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6513300			42154	11947	30982	31231							-0.024296111671219478
QYIELHRDST	10	Unmodified	_QYIELHRDST_					0	0	0		ENST00000468384.1_1_13:31037819-31040016:-|nuORF	ENST00000468384.1_1_13:31037819-31040016:-|nuORF	ENST00000468384.1_1_13:31037819-31040016:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	421.61895751953125	3	421.210565	1260.60986	0.17832	7.5109E-05	0.83177	0.00035035	1.0101	0.00042546	421.54542333922615	20.653	0.5112	20.653	20.384	20.895	0					11	9	2	0	0	0	0.86335	1	5319	5319		19.144	4.9258	1	646620			42155	12307	30983	31232	41072	41072					-0.01001593821570168
QYIKNFEREKI	11	Unmodified	_QYIKNFEREKI_					0	0	0		nc|ENSG00000149970|Q8WXI2-4|CNKSR2;nc|ENSG00000149970|Q8WXI2-2|CNKSR2;nc|ENSG00000149970|Q8WXI2-5|CNKSR2;ENSG00000149970|ENST00000379510|CNKSR2	nc|ENSG00000149970|Q8WXI2-4|CNKSR2	nc|ENSG00000149970|Q8WXI2-4|CNKSR2	MULTI-SECPEP	A375_MHC_IP_R1	1	490.3361511230469	3	489.936664	1466.78816	-0.57386	-0.00028115	-0.013521	-6.6243E-06	-0.58738	-0.00028778	489.9366430026971	26.815	0.45243	26.815	26.575	27.027	0					21	8	3	0	0	0	0.9907	1	8058	8058		9.2438	0	1	3958500			42156	5835	30984	31233	41073	41073					0.07344076097433572
QYIWNMLFSIF	11	Unmodified	_QYIWNMLFSIF_					0	0	0		ENSG00000179873|ENST00000589093|NLRP11;nc|ENSG00000179873|P59045-2|NLRP11	ENSG00000179873|ENST00000589093|NLRP11	ENSG00000179873|ENST00000589093|NLRP11	MSMS	A375_MHC_IP_R2	2	731.4575805664062	2	731.365398	1460.71624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.879	1	90.611	90.111	91.111	0.7318								0	0	0	0.16191	1	34199	34199		8.7454	3.0136	1				42157	8256	30985	31234	41074	41074					0.004314454193945494
QYKEQYDPDA	10	Unmodified	_QYKEQYDPDA_					0	0	0			REV__nc|ENSG00000172239|Q9H074-3|PAIP1	REV__nc|ENSG00000172239|Q9H074-3|PAIP1	MULTI-MSMS	A375_MHC_IP_R1	1	629.1744995117188	2	628.775125	1255.5357	-0.5725	-0.00035997	-0.43657	-0.0002745	-1.0091	-0.00063448	628.7748250136647	47.448	0.7122	47.448	47.107	47.819	0					31	13	3	0	0	0	0.30287	2	16661	16661;16726		39.95	5.548	1	9864900	+		42158	21130	30986	31235	41075;41076	41075					-0.08184981703743688
QYKEQYDPDA	10	Unmodified	_QYKEQYDPDA_					0	0	0			REV__nc|ENSG00000172239|Q9H074-3|PAIP1	REV__nc|ENSG00000172239|Q9H074-3|PAIP1	MULTI-SECPEP	A375_MHC_IP_R1	1	629.1744995117188	2	628.775125	1255.5357	-0.5725	-0.00035997	-0.43657	-0.0002745	-1.0091	-0.00063448	628.7748250136647	47.448	0.7122	47.448	47.107	47.819	0					31	13	3	0	0	0	0.60238	1	16661	16661		39.95	23.801	1	9864900	+		42159	21130	30986	31235	41077	41077					-0.08184981703743688
QYKEQYDPDA	10	Unmodified	_QYKEQYDPDA_					0	0	0			REV__nc|ENSG00000172239|Q9H074-3|PAIP1	REV__nc|ENSG00000172239|Q9H074-3|PAIP1	MULTI-MSMS	A375_MHC_IP_R2	2	629.1742553710938	2	628.775125	1255.5357	-0.90628	-0.00056985	0.21238	0.00013354	-0.6939	-0.00043631	628.7751988682666	27.074	0.35849	27.752	27.587	27.945	0.67857					15	6	3	0	0	0	0.57505	1	9235	9235		22.736	1.1993	1	2284800	+		42160	21130	30986	31235	41078	41078					-0.08184981703743688
QYKEQYDPDA	10	Unmodified	_QYKEQYDPDA_					0	0	0			REV__nc|ENSG00000172239|Q9H074-3|PAIP1	REV__nc|ENSG00000172239|Q9H074-3|PAIP1	MULTI-MSMS	A375_MHC_IP_R2	2	629.1751098632812	2	628.775125	1255.5357	-1.5353	-0.00096538	1.3751	0.00086464	-0.16021	-0.00010074	628.775681435124	29.548	0.35429	30.246	29.981	30.335	0.69872					10	6	2	0	0	0	0.39599	1	10348	10348		34.402	13.987	1	1644800	+		42161	21130	30986	31235	41079	41079					-0.08184981703743688
QYKEQYDPDA	10	Unmodified	_QYKEQYDPDA_					0	0	0			REV__nc|ENSG00000172239|Q9H074-3|PAIP1	REV__nc|ENSG00000172239|Q9H074-3|PAIP1	MULTI-MSMS	A375_MHC_IP_R2	2	629.1744995117188	2	628.775125	1255.5357	-0.63015	-0.00039622	-0.24444	-0.0001537	-0.87459	-0.00054992	628.7748861728776	46.827	0.66118	47.588	47.309	47.97	0.76128					31	12	3	0	0	0	0.13478	1	17532	17532		56.177	24.909	1	8473000	+		42162	21130	30986	31235	41080	41080					-0.08184981703743688
QYKEQYDPDA	10	Unmodified	_QYKEQYDPDA_					0	0	0			REV__nc|ENSG00000172239|Q9H074-3|PAIP1	REV__nc|ENSG00000172239|Q9H074-3|PAIP1	MULTI-SECPEP	A375_MHC_IP_R2	2	629.1744995117188	2	628.775125	1255.5357	-0.63015	-0.00039622	-0.24444	-0.0001537	-0.87459	-0.00054992	628.7748861728776	46.827	0.66118	47.588	47.309	47.97	0.76128					31	12	3	0	0	0	0.33054	1	17532	17532		56.177	56.177	1	8473000	+		42163	21130	30986	31235	41081	41081					-0.08184981703743688
QYKEQYDPDA	10	Unmodified	_QYKEQYDPDA_					0	0	0			REV__nc|ENSG00000172239|Q9H074-3|PAIP1	REV__nc|ENSG00000172239|Q9H074-3|PAIP1	MULTI-MATCH	A375_MHC_IP_R1	1		2	628.775125	1255.5357	-0.7147	-0.00044939	-0.27601	-0.00017355	-0.99072	-0.00062294	628.7750260296667	27.578	0.30304	27.578	27.432	27.735	0	-0.08708	-0.0002663	NaN	22.736	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2190800	+		42164	21130	30986	31235							-0.08184981703743688
QYKKFFEDSY	10	Unmodified	_QYKKFFEDSY_					0	0	0		tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	MSMS	A375_MHC_IP_R1	1	677.7788696289062	2	677.819335	1353.62412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.347	1	73.347	72.847	73.847	0								0	0	0	0.15435	1	26704	26704		6.7232	1.4263	1				42165	30038	30987	31236	41082	41082					-0.03854941393274203
QYKKWYFKLII	11	Unmodified	_QYKKWYFKLII_					0	0	0		RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	511.0335693359375	3	510.634146	1528.88061	-0.69292	-0.00035383	0.19178	9.7927E-05	-0.50115	-0.0002559	510.6341890818842	132.38	0.35551	132.38	132.23	132.59	0					18	6	3	0	0	0	0.73881	1	51084	51084		0.50596	0.50596	1	3971100			42166	29104	30988	31237	41083	41083					0.1373220590164692
QYKKWYFKLII	11	Unmodified	_QYKKWYFKLII_					0	0	0		RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	510.6820068359375	3	510.634146	1528.88061	-0.71074	-0.00036293	0.54745	0.00027954	-0.1633	-8.3384E-05	510.6343232002216	133.74	1.1738	133.74	132.89	134.07	0					117	22	6	0	0	0	0.73924	4	51245	51245;51323;51519;51555		0.094841	0.094841	1	199660000			42167	29104	30988	31237	41084;41085;41086;41087	41084					0.1373220590164692
QYKKWYFKLII	11	Unmodified	_QYKKWYFKLII_					0	0	0		RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	511.03338623046875	3	510.634146	1528.88061	-0.72362	-0.0003695	0.3872	0.00019772	-0.33642	-0.00017179	510.6342723658564	134.45	4.5436	134.45	134.07	138.61	0					279	88	6	0	0	0	0.73924	1	53199	53199		0.094841	0.094841	1	388110000			42168	29104	30988	31237	41088	41088					0.1373220590164692
QYKKWYFKLII	11	Unmodified	_QYKKWYFKLII_					0	0	0		RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	511.0340270996094	3	510.634146	1528.88061	-0.78975	-0.00040327	0.62639	0.00031985	-0.16336	-8.3419E-05	510.63435993696163	139.75	1.5221	139.75	138.61	140.13	0					51	29	3	0	0	0	0.73924	1	53672	53672		0.094841	0.094841	1	4492000			42169	29104	30988	31237	41089	41089					0.1373220590164692
QYKKWYFKLII	11	Unmodified	_QYKKWYFKLII_					0	0	0		RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	511.0341491699219	3	510.634146	1528.88061	-0.80061	-0.00040882	0.39463	0.00020151	-0.40597	-0.0002073	510.63426371157385	140.25	1.0811	140.25	140.03	141.11	0					42	20	3	0	0	0	0.73924	1	53962	53962		0.094841	0.094841	1	1417500			42170	29104	30988	31237	41090	41090					0.1373220590164692
QYKKWYFKLII	11	Unmodified	_QYKKWYFKLII_					0	0	0		RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	511.03369140625	3	510.634146	1528.88061	-0.70672	-0.00036087	0.3329	0.00016999	-0.37382	-0.00019089	510.6340257506498	132.24	0.46082	132.43	132.25	132.71	0.18953					20	8	3	0	0	0	0.73881	1	52048	52048		0.50596	0.50596	1	4786400			42171	29104	30988	31237	41091	41091					0.1373220590164692
QYKKWYFKLII	11	Unmodified	_QYKKWYFKLII_					0	0	0		RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	511.03375244140625	3	510.634146	1528.88061	-0.66982	-0.00034203	0.53364	0.00027249	-0.13618	-6.9537E-05	510.63432093917623	133.66	1.2685	133.82	132.94	134.21	0.16487					117	24	6	0	0	0	0.73924	3	52309	52309;52468;52525		0.094841	0.094841	1	212370000			42172	29104	30988	31237	41092;41093;41094	41092					0.1373220590164692
QYKKWYFKLII	11	Unmodified	_QYKKWYFKLII_					0	0	0		RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	511.0335388183594	3	510.634146	1528.88061	-0.64077	-0.0003272	0.57626	0.00029426	-0.064507	-3.294E-05	510.6343757076835	134.38	5.5456	134.52	134.13	139.68	0.13901					343	108	7	0	0	0	0.73924	2	53948	53948;54573		0.094841	0.094841	1	413480000			42173	29104	30988	31237	41095;41096	41095					0.1373220590164692
QYKKWYFKLII	11	Unmodified	_QYKKWYFKLII_					0	0	0		RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	511.03399658203125	3	510.634146	1528.88061	-0.55826	-0.00028507	0.27675	0.00014132	-0.28152	-0.00014375	510.63425013116836	139.77	0.60907	139.83	139.5	140.11	0.059906					17	11	2	0	0	0	0.73924	1	54760	54760		0.094841	0.094841	1	4525000			42174	29104	30988	31237	41097	41097					0.1373220590164692
QYKKWYFKLII	11	Unmodified	_QYKKWYFKLII_					0	0	0		RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	510.634146	1528.88061	-0.69292	-0.00035383	0.19178	9.7927E-05	-0.50115	-0.0002559	510.6341890818842	132.38	0.35551	132.38	132.23	132.59	0	-0.024852	-9.0074E-05	NaN	0.50596	18	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3971100			42175	29104	30988	31237							0.1373220590164692
QYKKWYFKLII	11	Unmodified	_QYKKWYFKLII_					0	0	0		RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	RYR3|p.E663K|1|0.35|ENSG00000198838|chr15:33603187-33603187|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	510.634146	1528.88061	-0.70672	-0.00036087	0.3329	0.00016999	-0.37382	-0.00019089	510.6340257506498	132.24	0.46082	132.43	132.25	132.71	0.18953	0.024852	0.00012611	NaN	0.50596	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4786400			42176	29104	30988	31237							0.1373220590164692
QYLCMVNKNF	10	Unmodified	_QYLCMVNKNF_					0	0	0		tr|U7SZ74|U7SZ74_FUSNUATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00870PE=4SV=1	tr|U7SZ74|U7SZ74_FUSNUATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00870PE=4SV=1	tr|U7SZ74|U7SZ74_FUSNUATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00870PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	420.9351501464844	3	420.535226	1258.58385	0.043529	1.8306E-05	-0.46853	-0.00019703	-0.425	-0.00017873	420.5350135917959	43.9	0.40671	43.9	43.706	44.113	0					17	7	3	0	0	0	0.91909	1	15339	15339		8.4443	5.0886	1	3596900			42177	29856	30989	31238	41098	41098					-0.03509902589075864
QYLKEWSD	8	Unmodified	_QYLKEWSD_					0	0	0			REV__SCN11A|p.M356I|1|0.35|ENSG00000168356|chr3:38910099-38910099|C/T|missense_variant	REV__SCN11A|p.M356I|1|0.35|ENSG00000168356|chr3:38910099-38910099|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	534.1796264648438	2	534.753464	1067.49238	-0.73073	-0.00039076	-3.4774	-0.0018596	-4.2081	-0.0022503	534.7520857650418	58.994	0.30684	58.994	58.836	59.143	0					9	5	2	0	0	0	0.93661	1	21155	21155		15.847	1.9411	1	911960	+		42178	20847	30990	31239	41099	41099					-0.03867126690374789
QYLLPPKSL	9	Unmodified	_QYLLPPKSL_					0	0	0		nc|ENSG00000107614|O14717-3|TRDMT1;nc|ENSG00000107614|O14717-2|TRDMT1;ENSG00000107614|ENST00000377799|TRDMT1;ENST00000452380.6_1_10:17194042-17210877:-|nuORF	nc|ENSG00000107614|O14717-3|TRDMT1	nc|ENSG00000107614|O14717-3|TRDMT1	MULTI-SECPEP	A375_MHC_IP_R2	2	530.2192993164062	2	529.815867	1057.61718	-0.65121	-0.00034502	2.9889	0.0015836	2.3377	0.0012386	530.3178416781404	32.635	0.40663	33.372	33.213	33.62	0.73692					18	7	4	0	0	0	0.71541	1	11680	11680		11.64	4.9171	1	3682700			42179	2746	30991	31240	41100	41100					0.09067790516814966
QYLLPPKSL	9	Unmodified	_QYLLPPKSL_					0	0	0		nc|ENSG00000107614|O14717-3|TRDMT1;nc|ENSG00000107614|O14717-2|TRDMT1;ENSG00000107614|ENST00000377799|TRDMT1;ENST00000452380.6_1_10:17194042-17210877:-|nuORF	nc|ENSG00000107614|O14717-3|TRDMT1	nc|ENSG00000107614|O14717-3|TRDMT1	MULTI-MATCH	A375_MHC_IP_R1	1		2	529.815867	1057.61718	-0.51849	-0.00027471	3.1527	0.0016704	2.6342	0.0013957	530.3180444457091	33.573	0.35461	33.573	33.393	33.748	0	0.10018	7.5022E-05	NaN	11.64	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4947900			42180	2746	30991	31240							0.09067790516814966
QYLRKALRQ	9	Unmodified	_QYLRKALRQ_					0	0	0			REV__PSD|p.R567Q|1|0.9|ENSG00000059915|chr10:102412429-102412429|C/T|missense_variant	REV__PSD|p.R567Q|1|0.9|ENSG00000059915|chr10:102412429-102412429|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	392.9400329589844	3	392.571768	1174.69348	0.11889	4.6674E-05	-0.11909	-4.6751E-05	-0.00019586	-7.689E-08	392.571709122046	25.234	0.91349	25.234	25.053	25.966	0					47	17	4	0	0	0	0.69317	1	7530	7530		7.609	2.2062	1	117670000	+		42181	27849	30992	31241	41101	41101					0.11311607136781276
QYNPVKQQL	9	Unmodified	_QYNPVKQQL_					0	0	0		nc|ENSG00000068120|Q13057-2|COASY;ENSG00000068120|ENST00000393818|COASY	nc|ENSG00000068120|Q13057-2|COASY	nc|ENSG00000068120|Q13057-2|COASY	MULTI-SECPEP	A375_MHC_IP_R1	1	559.2037963867188	2	559.303655	1116.59276	-0.78052	-0.00043655	0.73972	0.00041373	-0.040791	-2.2815E-05	559.3041966075041	36.545	0.55783	36.545	36.287	36.845	0					16	10	2	0	0	0	0.061442	1	12224	12224		81.613	39.773	1	4394800			42182	1454	30993	31242	41102	41102					0.03912530363277256
QYNPVKQQL	9	Unmodified	_QYNPVKQQL_					0	0	0		nc|ENSG00000068120|Q13057-2|COASY;ENSG00000068120|ENST00000393818|COASY	nc|ENSG00000068120|Q13057-2|COASY	nc|ENSG00000068120|Q13057-2|COASY	MULTI-MATCH	A375_MHC_IP_R2	2		2	559.303655	1116.59276	-0.8676	-0.00048525	0.90544	0.00050642	0.037844	2.1166E-05	559.3041619916969	35.799	0.65997	36.562	36.081	36.741	0.76338	0.0084612	6.8942E-05	NaN	81.613	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4938400			42183	1454	30993	31242							0.03912530363277256
QYRFQRFRLRF	11	Unmodified	_QYRFQRFRLRF_					0	0	0			REV__ENST00000466948.1_1_7:99217289-99228306:+|nuORF	REV__ENST00000466948.1_1_7:99217289-99228306:+|nuORF	MSMS	A375_MHC_IP_R2	2	808.9713134765625	2	808.949676	1615.8848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.31	1	127.58	127.08	128.08	0.26593								0	0	0	0.16354	1	49906	49906		0.30703	0.03801	1		+		42184	22247	30994	31243	41103	41103					0.10149108167911436
QYRFRKRD	8	Unmodified	_QYRFRKRD_					0	0	0		nc|ENSG00000130653|Q6ZV29-2|PNPLA7;nc|ENSG00000130653|Q6ZV29-3|PNPLA7;nc|ENSG00000130653|Q6ZV29-4|PNPLA7;nc|ENSG00000130653|Q6ZV29|PNPLA7;ENSG00000130653|ENST00000406427|PNPLA7	nc|ENSG00000130653|Q6ZV29-2|PNPLA7	nc|ENSG00000130653|Q6ZV29-2|PNPLA7	MULTI-SECPEP	A375_MHC_IP_R2	2	390.9465026855469	3	390.215984	1167.62612	-0.48743	-0.0001902	-0.73645	-0.00028737	-1.2239	-0.00047758	390.2156152707867	23.273	0.35328	23.903	23.726	24.079	0.63014					8	6	2	0	0	0	0.972	1	7517	7517		5.7319	0.83484	1	1913200			42185	4260	30995	31244	41104	41104					0.04901576925840345
QYRQIKLF	8	Unmodified	_QYRQIKLF_					0	0	0			REV__ENST00000366923.7_1_1:220152842-220152914:-|nuORF	REV__ENST00000366923.7_1_1:220152842-220152914:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	366.28204345703125	3	365.881831	1094.62366	0.25358	9.2782E-05	-0.1008	-3.688E-05	0.15278	5.5901E-05	365.8817511596894	40.768	0.55441	40.768	40.509	41.063	0					22	10	3	0	0	0	0.85124	1	14035	14035		26.884	4.1474	1	5994200	+		42186	23945	30996	31245	41105	41105					0.08013728468154113
QYRQIKLF	8	Unmodified	_QYRQIKLF_					0	0	0			REV__ENST00000366923.7_1_1:220152842-220152914:-|nuORF	REV__ENST00000366923.7_1_1:220152842-220152914:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	366.28204345703125	3	365.881831	1094.62366	0.028312	1.0359E-05	0.55028	0.00020134	0.57859	0.00021169	365.8819899222788	39.836	0.45763	40.61	40.32	40.777	0.77451					13	8	2	0	0	0	0.85124	1	14717	14717		26.884	6.4691	1	3973900	+		42187	23945	30996	31245	41106	41106					0.08013728468154113
QYRSAVKK	8	Unmodified	_QYRSAVKK_					0	0	0			REV__ENSG00000198056|ENST00000338193|PRIM1	REV__ENSG00000198056|ENST00000338193|PRIM1	MSMS	A375_MHC_IP_R1	1	490.3361511230469	2	490.287808	978.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.836	1	26.836	26.336	27.336	0								0	0	0	0.16876	1	8058	8058		5.7604	0	1		+		42188	22342	30997	31246	41107	41107					0.07092582399991443
QYRTKDAST	9	Unmodified	_QYRTKDAST_					0	0	0		nc|ENSG00000134352|P40189-3|IL6ST;ENSG00000134352|ENST00000381298|IL6ST;nc|ENSG00000134352|P40189-2|IL6ST	nc|ENSG00000134352|P40189-3|IL6ST	nc|ENSG00000134352|P40189-3|IL6ST	MULTI-MSMS	A375_MHC_IP_R2	2	535.6668090820312	2	535.26727	1068.51999	-0.73001	-0.00039075	-0.45711	-0.00024468	-1.1871	-0.00063543	535.2669525423098	69.366	0.96646	70.1	69.625	70.591	0.73421					39	18	3	0	0	0	0.65721	1	26257	26257		10.824	1.4408	1	3853800			42189	4569	30998	31247	41108	41108					-0.01153223430151229
QYRTKDAST	9	Unmodified	_QYRTKDAST_					0	0	0		nc|ENSG00000134352|P40189-3|IL6ST;ENSG00000134352|ENST00000381298|IL6ST;nc|ENSG00000134352|P40189-2|IL6ST	nc|ENSG00000134352|P40189-3|IL6ST	nc|ENSG00000134352|P40189-3|IL6ST	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	535.26727	1068.51999	-0.40774	-0.00021825	-0.18466	-9.8845E-05	-0.59241	-0.0003171	535.2671177864175	70.016	1.1695	70.016	69.427	70.597	0	-0.041825	0.00015088	NaN	10.824	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4337200			42190	4569	30998	31247							-0.01153223430151229
QYSCYHCPY	9	Unmodified	_QYSCYHCPY_					0	0	0			REV__ENSG00000115568|ENST00000411696|ZNF142	REV__ENSG00000115568|ENST00000411696|ZNF142	MSMS	A375_MHC_IP_R2	2	582.1759643554688	2	582.217877	1162.4212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.384	1	91.117	90.617	91.617	0.73367								0	0	0	0.15486	1	34390	34390		4.756	0	1		+		42191	17894	30999	31248	41109	41109					-0.15351285991073382
QYSNNIRQL	9	Unmodified	_QYSNNIRQL_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-SECPEP	A375_MHC_IP_R1	1	568.6962890625	2	568.296362	1134.57817	-0.40275	-0.00022888	0.15802	8.98E-05	-0.24473	-0.00013908	568.2964505013264	34.431	0.65641	34.431	34.154	34.81	0					38	12	4	0	0	0	0.010788	1	11330	11330		142.08	79.507	1	19800000			42192	4297	31000	31249	41110	41110					0.016264582151279683
QYSNNIRQL	9	Unmodified	_QYSNNIRQL_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-SECPEP	A375_MHC_IP_R2	2	568.677490234375	2	568.296362	1134.57817	-0.88479	-0.00050282	0.55617	0.00031607	-0.32862	-0.00018675	568.2966661120321	33.723	0.60678	34.475	34.196	34.803	0.75225					32	11	4	0	0	0	0.011405	1	12042	12042		110.67	51.996	1	18861000			42193	4297	31000	31249	41111	41111					0.016264582151279683
QYTQRYRHERW	11	Unmodified	_QYTQRYRHERW_					0	0	0			REV__ENST00000529196.5_1_11:125488283-125488340:+|nuORF	REV__ENST00000529196.5_1_11:125488283-125488340:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	812.2998046875	2	811.90038	1621.78621	-0.50315	-0.00040851	-0.21023	-0.00017068	-0.71337	-0.00057919	811.8998810490457	65.335	0.40861	65.335	65.105	65.514	0					14	7	2	0	0	0	0.73906	1	23681	23681		0.26902	0.26902	1	3494500	+		42194	25814	31001	31250	41112	41112					0.00018460132218933722
QYTQRYRHERW	11	Unmodified	_QYTQRYRHERW_					0	0	0			REV__ENST00000529196.5_1_11:125488283-125488340:+|nuORF	REV__ENST00000529196.5_1_11:125488283-125488340:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	812.299072265625	2	811.90038	1621.78621	-0.82887	-0.00067296	-0.65768	-0.00053397	-1.4866	-0.0012069	811.8999780318762	64.646	0.56039	65.387	65.157	65.717	0.74022					17	10	2	0	0	0	0.73906	1	24501	24501		0.26902	0.26902	1	2866800	+		42195	25814	31001	31250	41113	41113					0.00018460132218933722
QYTQRYRHERW	11	Unmodified	_QYTQRYRHERW_					0	0	0			REV__ENST00000529196.5_1_11:125488283-125488340:+|nuORF	REV__ENST00000529196.5_1_11:125488283-125488340:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	811.90038	1621.78621	-0.82887	-0.00067296	-0.65768	-0.00053397	-1.4866	-0.0012069	811.8999780318762	64.646	0.56039	65.387	65.157	65.717	0.74022	0.025884	-0.00034765	NaN	0.26902	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2866800	+		42196	25814	31001	31250							0.00018460132218933722
QYVLVRLSSSR	11	Unmodified	_QYVLVRLSSSR_					0	0	0			REV__nc|ENSG00000146414|Q149N8-2|SHPRH	REV__nc|ENSG00000146414|Q149N8-2|SHPRH	MULTI-MSMS	A375_MHC_IP_R1	1	436.6838073730469	3	436.585854	1306.73573	-0.39584	-0.00017282	-0.5285	-0.00023074	-0.92434	-0.00040355	436.9199828156949	132.34	0.86432	132.34	132.13	133	0					22	16	2	0	0	0	0.73698	1	51088	51088		2.2527	1.7468	1	3120400	+		42197	19535	31002	31251	41114	41114					0.09463537754504614
QYVLVRLSSSR	11	Unmodified	_QYVLVRLSSSR_					0	0	0			REV__nc|ENSG00000146414|Q149N8-2|SHPRH	REV__nc|ENSG00000146414|Q149N8-2|SHPRH	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	436.585854	1306.73573	-0.24368	-0.00010639	-0.97089	-0.00042388	-1.2146	-0.00053026	436.58540540160453	132.22	0.56226	132.41	132.2	132.76	0.18953	0.03802	-0.00025217	NaN	2.2527	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2795000	+		42198	19535	31002	31251							0.09463537754504614
QYVRKYEGE	9	Unmodified	_QYVRKYEGE_					0	0	0		ENSG00000109321|ENST00000395748|AREG	ENSG00000109321|ENST00000395748|AREG	ENSG00000109321|ENST00000395748|AREG	MSMS	A375_MHC_IP_R1	1	391.1335144042969	3	391.196256	1170.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.46	1	106.46	105.96	106.96	0								0	0	0	0.15486	1	39078	39078		2.4985	1.3887	1				42199	2864	31003	31252	41115	41115					-0.011523638790094992
QYVSVVRRLE	10	Unmodified	_QYVSVVRRLE_					0	0	0			REV__nc|ENSG00000157927|Q96JH8-2|RADIL	REV__nc|ENSG00000157927|Q96JH8-2|RADIL	MSMS	A375_MHC_IP_R1	1	624.8546142578125	2	624.856586	1247.69862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.46	1	121.46	120.96	121.96	0								0	0	0	0.15451	1	45102	45102		6.2058	2.3295	1		+		42200	20054	31004	31253	41116	41116					0.08467866208752639
QYWKWKRFAWL	11	Unmodified	_QYWKWKRFAWL_					0	0	0			REV__KIF1A|p.E770Rfs*62|1|0.42|ENSG00000130294|chr2:240760775-240760776|-/G|frameshift_variant	REV__KIF1A|p.E770Rfs*62|1|0.42|ENSG00000130294|chr2:240760775-240760776|-/G|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	537.7044067382812	3	537.957623	1610.85104	-0.73364	-0.00039467	-2.2609	-0.0012163	-2.9946	-0.001611	538.2916649723049	94.145	0.2501	94.145	93.941	94.191	0					7	4	2	0	0	0	1.0014	1	34609	34609		0.094841	0	1	635980	+		42201	18530	31005	31254	41117	41117					0.07004686676145866
QYYANEQY	8	Unmodified	_QYYANEQY_					0	0	0			REV__ENST00000535402.1_1_12:661267-661702:+|nuORF	REV__ENST00000535402.1_1_12:661267-661702:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	539.6962280273438	2	539.727446	1077.44034	-0.13649	-7.3667E-05	0.37959	0.00020487	0.2431	0.00013121	539.7275707713254	69.401	0.56017	69.401	69.121	69.681	0					16	10	3	0	0	0	0.76654	1	25124	25124		15.847	5.6638	1	1976300	+		42202	19130	31006	31255	41118	41118					-0.09528290104140069
QYYTSKCP	8	Unmodified	_QYYTSKCP_					0	0	0			REV__ENSG00000212658|ENST00000391353|KRTAP29-1	REV__ENSG00000212658|ENST00000391353|KRTAP29-1	MSMS	A375_MHC_IP_R1	1	495.18023681640625	2	495.223485	988.432418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.13	1	142.13	141.63	142.63	0								0	0	0	0.16876	1	54538	54538		5.2307	0.90143	1		+		42203	22607	31007	31256	41119	41119					-0.06226140625267362
RAAALRPL	8	Unmodified	_RAAALRPL_					0	0	0		ENST00000576980.1_1_17:7255325-7255865:+|nuORF	ENST00000576980.1_1_17:7255325-7255865:+|nuORF	ENST00000576980.1_1_17:7255325-7255865:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	434.67974853515625	2	434.279786	866.54502	-0.37322	-0.00016208	0.13642	5.9243E-05	-0.23681	-0.00010284	434.27983984992443	27.002	0.55223	27.002	26.779	27.331	0					22	10	3	0	0	0	0.31691	1	8112	8112		57.471	15.377	1	20903000			42204	13645	31008	31257	41120	41120					0.10640920953744626
RAAALRPL	8	Unmodified	_RAAALRPL_					0	0	0		ENST00000576980.1_1_17:7255325-7255865:+|nuORF	ENST00000576980.1_1_17:7255325-7255865:+|nuORF	ENST00000576980.1_1_17:7255325-7255865:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	434.6792297363281	2	434.279786	866.54502	-0.67354	-0.00029251	0.082	3.5611E-05	-0.59154	-0.0002569	434.2797741164726	26.167	0.66024	26.827	26.602	27.262	0.65992					23	12	3	0	0	0	0.86263	1	8810	8810		26.884	5.137	1	8821900			42205	13645	31008	31257	41121	41121					0.10640920953744626
RAADAKEKQFW	11	Unmodified	_RAADAKEKQFW_					0	0	0		ENSG00000144645|ENST00000396556|OSBPL10;nc|ENSG00000144645|Q9BXB5-2|OSBPL10;ENST00000466604.5_1_3:31863684-32001816:-|nuORF	ENSG00000144645|ENST00000396556|OSBPL10	ENSG00000144645|ENST00000396556|OSBPL10	MULTI-MSMS	A375_MHC_IP_R1	1	451.3045349121094	3	450.570204	1348.68878	-0.48083	-0.00021665	-1.0366	-0.00046708	-1.5175	-0.00068372	450.9046370746558	26.379	0.45524	26.379	26.221	26.677	0					18	8	3	0	0	0	0.52169	1	7901	7901		29.419	20.175	1	3914400			42206	5500	31009	31258	41122	41122					0.028386782033749114
RAADAKEKQFW	11	Unmodified	_RAADAKEKQFW_					0	0	0		ENSG00000144645|ENST00000396556|OSBPL10;nc|ENSG00000144645|Q9BXB5-2|OSBPL10;ENST00000466604.5_1_3:31863684-32001816:-|nuORF	ENSG00000144645|ENST00000396556|OSBPL10	ENSG00000144645|ENST00000396556|OSBPL10	MULTI-MSMS	A375_MHC_IP_R2	2	450.9700927734375	3	450.570204	1348.68878	-0.74312	-0.00033483	-0.52576	-0.00023689	-1.2689	-0.00057172	450.57017139318197	25.764	0.35693	26.424	26.245	26.602	0.65992					14	6	3	0	0	0	0.64117	1	8683	8683		20.12	13.496	1	3126400			42207	5500	31009	31258	41123	41123					0.028386782033749114
RAAGALSKRYW	11	Unmodified	_RAAGALSKRYW_					0	0	0		nc|ENSG00000186283|Q9H497-2|TOR3A;ENSG00000186283|ENST00000367627|TOR3A	nc|ENSG00000186283|Q9H497-2|TOR3A	nc|ENSG00000186283|Q9H497-2|TOR3A	MULTI-MSMS	A375_MHC_IP_R1	1	427.3066101074219	3	426.907039	1277.69929	-0.42723	-0.00018239	-0.078907	-3.3686E-05	-0.50614	-0.00021607	426.90694941068745	29.022	0.35602	29.022	28.845	29.201	0					16	6	3	0	0	0	0.026094	1	9050	9050		84.06	73.161	1	9779400			42208	8738	31010	31259	41124	41124					0.07154705648463278
RAAGALSKRYW	11	Unmodified	_RAAGALSKRYW_					0	0	0		nc|ENSG00000186283|Q9H497-2|TOR3A;ENSG00000186283|ENST00000367627|TOR3A	nc|ENSG00000186283|Q9H497-2|TOR3A	nc|ENSG00000186283|Q9H497-2|TOR3A	MULTI-MSMS	A375_MHC_IP_R2	2	427.6410217285156	3	426.907039	1277.69929	-0.39747	-0.00016968	-0.42585	-0.0001818	-0.82332	-0.00035148	426.9068805225314	28.154	0.35486	28.833	28.655	29.01	0.67857					17	6	4	0	0	0	0.0008264	1	9703	9703		106.29	90.014	1	12972000			42209	8738	31010	31259	41125	41125					0.07154705648463278
RAAKPKPC	8	Unmodified	_RAAKPKPC_					0	0	0			REV__ENST00000533478.5_1_16:81174978-81214887:-|nuORF	REV__ENST00000533478.5_1_16:81174978-81214887:-|nuORF	MSMS	A375_MHC_IP_R1	1	435.65118408203125	2	435.752547	869.490542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.68	1	100.68	100.18	101.18	0								0	0	0	0.16876	1	37004	37004		0.69038	0	1		+		42210	25882	31011	31260	41126	41126					0.050575858106640226
RAALHLPSV	9	Unmodified	_RAALHLPSV_					0	0	0			REV__nc|ENSG00000144488|Q6ZVH7-2|ESPNL	REV__nc|ENSG00000144488|Q6ZVH7-2|ESPNL	MULTI-SECPEP	A375_MHC_IP_R1	1	482.66644287109375	2	482.290351	962.566149	-0.52834	-0.00025481	0.6275	0.00030264	0.099162	4.7825E-05	482.2908900433481	46.906	0.2538	46.906	46.749	47.003	0					7	4	2	0	0	0	0.71541	1	16482	16482		11.64	3.047	1	1319900	+		42211	19427	31012	31261	41127	41127					0.08336886262611642
RAALIARV	8	Unmodified	_RAALIARV_					0	0	0		nc|ENSG00000103490|Q9ULZ3-2|PYCARD;ENSG00000103490|ENST00000247470|PYCARD;nc|ENSG00000103490|Q9ULZ3-3|PYCARD;ENST00000565022.1_1_16:31212908-31213633:-|nuORF	nc|ENSG00000103490|Q9ULZ3-2|PYCARD	nc|ENSG00000103490|Q9ULZ3-2|PYCARD	MULTI-SECPEP	A375_MHC_IP_R1	1	435.6874084472656	2	435.287611	868.56067	-0.24132	-0.00010504	0.052719	2.2948E-05	-0.1886	-8.2096E-05	435.2876035710351	31.198	0.6576	31.198	30.959	31.616	0					28	12	3	0	0	0	0.81376	1	9971	9971		32.305	5.4218	1	14205000			42212	2454	31013	31262	41128	41128					0.12113207470792986
RAALIARV	8	Unmodified	_RAALIARV_					0	0	0		nc|ENSG00000103490|Q9ULZ3-2|PYCARD;ENSG00000103490|ENST00000247470|PYCARD;nc|ENSG00000103490|Q9ULZ3-3|PYCARD;ENST00000565022.1_1_16:31212908-31213633:-|nuORF	nc|ENSG00000103490|Q9ULZ3-2|PYCARD	nc|ENSG00000103490|Q9ULZ3-2|PYCARD	MULTI-SECPEP	A375_MHC_IP_R2	2	435.6874694824219	2	435.287611	868.56067	-0.33048	-0.00014386	0.22665	9.8658E-05	-0.10383	-4.5197E-05	435.28763741706285	30.269	0.65839	30.988	30.759	31.417	0.71857					30	12	4	0	0	0	0.46048	1	10609	10609		46.021	8.047	1	14354000			42213	2454	31013	31262	41129	41129					0.12113207470792986
RAALRLLTY	9	Unmodified	_RAALRLLTY_					0	0	0		nc|ENSG00000140534|Q7Z2Z1-2|TICRR;ENSG00000140534|ENST00000268138|TICRR	nc|ENSG00000140534|Q7Z2Z1-2|TICRR	nc|ENSG00000140534|Q7Z2Z1-2|TICRR	MULTI-MSMS	A375_MHC_IP_R2	2	359.9566955566406	3	359.557348	1075.65021	-0.6176	-0.00022206	-0.33214	-0.00011942	-0.94974	-0.00034149	359.55718113412667	57.006	0.61185	57.756	57.459	58.07	0.75014					21	11	3	0	0	0	0.29981	1	21559	21559		22.658	12.584	1	1864600			42214	5165	31014	31263	41130	41130					0.11541417359512707
RAALRSPV	8	Unmodified	_RAALRSPV_					0	0	0		ENST00000240285.9_1_8:74206855-74206900:+|nuORF	ENST00000240285.9_1_8:74206855-74206900:+|nuORF	ENST00000240285.9_1_8:74206855-74206900:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	435.6874694824219	2	435.269419	868.524284	-0.29116	-0.00012673	-0.40475	-0.00017617	-0.69591	-0.00030291	435.2692908698517	30.674	0.8075	31.392	30.911	31.719	0.71857					24	15	2	0	0	0	0.94479	1	10609	10609		8.5933	3.3626	1	1853200			42215	10167	31015	31264	41131	41131					0.08476330574092117
RAANPPVNI	9	Unmodified	_RAANPPVNI_					0	0	0		HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|123|3|sense;nc|ENSG816|P62685|ERVK-8_gag;nc|ENSG856|P87889|ERVK-10_gag;nc|ENSG846|Q9YNA8|ERVK-19_gag;nc|ENSG841|P62683|ERVK-21_gag;nc|ENSG838|P63145|ERVK-24_gag;nc|ENSG827|Q7LDI9|ERVK-6_gag;nc|ENSG820|P63130|ERVK-7_gag;nc|ENSG810|P63126|ERVK-9_gag;nc|ENSG800|P62684|HERVK_113_gag;nc|ENSG809|P63128|ERVK-9_pol	HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|123|3|sense	HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|123|3|sense	MULTI-MSMS	A375_MHC_IP_R1	1	476.32781982421875	2	476.272158	950.529764	-0.54221	-0.00025824	0.50596	0.00024098	-0.036245	-1.7262E-05	476.2724039979195	34.06	0.60881	34.06	33.848	34.456	0					19	11	2	0	0	0	0.4867	1	11141	11141		20.454	0	1	6526900			42216	14112	31016	31265	41132	41132					0.05252009365904087
RAAPFSLEY	9	Unmodified	_RAAPFSLEY_					0	0	0		ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	MULTI-SECPEP	A375_MHC_IP_R1	1	526.6922607421875	2	527.271824	1052.5291	-0.38284	-0.00020186	-0.20442	-0.00010778	-0.58726	-0.00030964	527.2716140998534	71.134	0.97137	71.134	70.494	71.465	0					53	18	4	0	0	0	0.04038	1	25853	25853		96.111	43.843	1	41943000			42217	8317	31017	31266	41133	41133					0.004931699261760514
RAAPFSLEY	9	Unmodified	_RAAPFSLEY_					0	0	0		ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	MULTI-MSMS	A375_MHC_IP_R2	2	527.6720581054688	2	527.271824	1052.5291	-0.4313	-0.00022741	-0.43738	-0.00023062	-0.86868	-0.00045803	527.2715122082157	70.39	1.1674	71.124	70.386	71.553	0.73421					62	22	4	0	0	0	0.2487	1	26613	26613		34.402	1.616	1	43205000			42218	8317	31017	31266	41134	41134					0.004931699261760514
RAARDPVLW	9	Unmodified	_RAARDPVLW_					0	0	0		ENST00000429204.5_1_1:226925125-226925356:-|nuORF	ENST00000429204.5_1_1:226925125-226925356:-|nuORF	ENST00000429204.5_1_1:226925125-226925356:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	362.2734375	3	361.873447	1082.59851	0.36051	0.00013046	-0.32977	-0.00011933	0.030739	1.1124E-05	361.8732310449718	45.664	0.80851	45.664	45.183	45.992	0					26	15	3	0	0	0	0.48845	1	15991	15991		37.075	37.075	1	7201100			42219	11840	31018	31267	41135	41135					0.06051673665592716
RAARDPVLW	9	Unmodified	_RAARDPVLW_					0	0	0		ENST00000429204.5_1_1:226925125-226925356:-|nuORF	ENST00000429204.5_1_1:226925125-226925356:-|nuORF	ENST00000429204.5_1_1:226925125-226925356:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	362.2732238769531	3	361.873447	1082.59851	-0.27874	-0.00010087	-0.26255	-9.501E-05	-0.54129	-0.00019588	361.87333119825024	44.681	0.61182	45.45	45.086	45.698	0.7691					19	11	2	0	0	0	0.21241	1	16656	16656		37.075	19.632	1	7043200			42220	11840	31018	31267	41136	41136					0.06051673665592716
RAATSPALF	9	Unmodified	_RAATSPALF_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R1	1	467.6975402832031	2	467.261259	932.507966	-0.17592	-8.2201E-05	-0.15465	-7.2263E-05	-0.33057	-0.00015446	467.2609989169052	51.26	0.65925	51.26	50.966	51.625	0					18	12	2	0	0	0	0.44024	1	18240	18240		22.736	0.98964	1	3576700			42221	9114	31019	31268	41137	41137					0.039012046173297676
RACHILAIYF	10	Unmodified	_RACHILAIYF_					0	0	0		ENSG00000142149|ENST00000270112|HUNK	ENSG00000142149|ENST00000270112|HUNK	ENSG00000142149|ENST00000270112|HUNK	MSMS	A375_MHC_IP_R1	1	402.92138671875	3	402.886588	1205.63793	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.456	1	39.456	38.956	39.956	0								0	0	0	0.15465	1	13487	13487		3.0723	0.81953	1				42222	5289	31020	31269	41138	41138					0.043340576248056095
RADATLGAF	9	Unmodified	_RADATLGAF_					0	0	0			REV__nc|ENSG00000101182|O14818-4|PSMA7	REV__nc|ENSG00000101182|O14818-4|PSMA7	MULTI-MSMS	A375_MHC_IP_R1	1	461.64239501953125	2	461.243067	920.47158	0.33571	0.00015484	-0.05686	-2.6226E-05	0.27884	0.00012862	461.24259022137016	44.967	0.45541	44.967	44.676	45.132	0					18	8	3	0	0	0	0.64971	1	15734	15734		11.495	0.67078	1	2411300	+		42223	17147	31021	31270	41139	41139					0.008163277206335806
RADDARQLF	9	Unmodified	_RADDARQLF_					0	0	0		nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2;nc|ENSG00000127955|P63096-2|GNAI1;ENSG00000127955|ENST00000649796|GNAI1;GNAI2|p.S99Y|1|0.17|ENSG00000114353|chr3:50252531-50252531|C/A|missense_variant;GNAI2|p.P98L|1|0.37|ENSG00000114353|chr3:50252528-50252528|C/T|missense_variant;ENSG00000065135|ENST00000369851|GNAI3	nc|ENSG00000114353|P04899-6|GNAI2	nc|ENSG00000114353|P04899-6|GNAI2	MULTI-MSMS	A375_MHC_IP_R1	1	546.6824951171875	2	546.283254	1090.55196	-0.64839	-0.00035421	-0.22992	-0.0001256	-0.87832	-0.00047981	546.2831281928283	36.313	1.2228	36.313	35.472	36.695	0					41	23	3	0	0	0	0.02331	2	12104	12104;12193		80.676	34.936	1	29251000			42224	3213	31022	31271	41140;41141	41140					0.010301890436494432
RADDARQLF	9	Unmodified	_RADDARQLF_					0	0	0		nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2;nc|ENSG00000127955|P63096-2|GNAI1;ENSG00000127955|ENST00000649796|GNAI1;GNAI2|p.S99Y|1|0.17|ENSG00000114353|chr3:50252531-50252531|C/A|missense_variant;GNAI2|p.P98L|1|0.37|ENSG00000114353|chr3:50252528-50252528|C/T|missense_variant;ENSG00000065135|ENST00000369851|GNAI3	nc|ENSG00000114353|P04899-6|GNAI2	nc|ENSG00000114353|P04899-6|GNAI2	MULTI-SECPEP	A375_MHC_IP_R2	2	546.6828002929688	2	546.283254	1090.55196	-1.0236	-0.0005592	-0.03247	-1.7738E-05	-1.0561	-0.00057694	546.2832570692777	35.443	0.91297	36.206	35.929	36.842	0.76338					44	17	4	0	0	0	0.11887	1	12813	12813		55.235	29.214	1	30494000			42225	3213	31022	31271	41142	41142					0.010301890436494432
RADEIKDAIY	10	Unmodified	_RADEIKDAIY_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP;ENST00000573850.1_1_16:27709674-27761267:+|nuORF	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	MULTI-SECPEP	A375_MHC_IP_R1	1	597.653076171875	2	597.311677	1192.6088	-0.27828	-0.00016622	0.35824	0.00021398	0.079968	4.7766E-05	597.3118143812134	56.465	0.40462	56.465	56.194	56.599	0					11	7	2	0	0	0	0.87163	1	20276	20276		19.257	13.96	1	1177000			42226	1201	31023	31272	41143	41143					0.02020191809538119
RADEIKDAIY	10	Unmodified	_RADEIKDAIY_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP;ENST00000573850.1_1_16:27709674-27761267:+|nuORF	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	MULTI-MATCH	A375_MHC_IP_R2	2		2	597.311677	1192.6088	-0.65617	-0.00039194	1.0322	0.00061655	0.37603	0.00022461	597.3117501065453	55.682	0.25384	56.432	56.337	56.591	0.75053	-0.016272	0.00071361	NaN	19.257	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1355200			42227	1201	31023	31272							0.02020191809538119
RADGNFLLY	9	Unmodified	_RADGNFLLY_					0	0	0		ENST00000498418.5_1_22:45593059-45595943:-|nuORF;ENST00000474515.5_1_22:45593059-45598540:-|nuORF;nc|ENSG00000100364|Q6ICG6-3|KIAA0930;ENSG00000100364|ENST00000336156|KIAA0930;nc|ENSG00000100364|Q6ICG6-2|KIAA0930;ENST00000483374.1_1_22:45593059-45593908:-|nuORF	ENST00000498418.5_1_22:45593059-45595943:-|nuORF	ENST00000498418.5_1_22:45593059-45595943:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	535.6788330078125	2	534.777274	1067.53999	-0.71906	-0.00038454	-0.37473	-0.0002004	-1.0938	-0.00058494	534.7770898750549	78.974	0.71075	79.718	79.387	80.098	0.74474					36	13	4	0	0	0	0.55471	1	29927	29927		17.113	0.026346	1	17357000			42228	2168	31024	31273	41144	41144					0.00892572300494976
RADLEGFTV	9	Unmodified	_RADLEGFTV_					0	0	0			REV__ENSG00000083807|ENST00000263093|SLC27A5	REV__ENSG00000083807|ENST00000263093|SLC27A5	MULTI-SECPEP	A375_MHC_IP_R1	1	504.1754455566406	2	504.261456	1006.50836	-0.34396	-0.00017344	0.35559	0.00017931	0.011636	5.8675E-06	504.26150012851	104.16	1.4241	104.16	103.42	104.84	0					38	27	3	0	0	0	0.71541	1	38188	38188		16.942	14.64	1	1302200	+		42229	16812	31025	31274	41145	41145					0.005365795465195333
RADPEAGLLLY	11	Unmodified	_RADPEAGLLLY_					0	0	0		nc|ENSG00000138346|P51530-2|DNA2;nc|ENSG00000138346|P51530-3|DNA2;nc|ENSG00000138346|P51530-4|DNA2;ENSG00000138346|ENST00000358410|DNA2	nc|ENSG00000138346|P51530-2|DNA2	nc|ENSG00000138346|P51530-2|DNA2	MULTI-SECPEP	A375_MHC_IP_R1	1	609.7303466796875	2	609.32987	1216.64519	-0.52702	-0.00032113	0.33093	0.00020165	-0.19608	-0.00011948	609.831456483172	86.472	0.50735	86.472	86.172	86.679	0					21	9	3	0	0	0	0.79665	1	31698	31698		34.222	14.965	1	3548100			42230	4980	31026	31275	41146	41146					0.045530687062409925
RADPEAGLLLY	11	Unmodified	_RADPEAGLLLY_					0	0	0		nc|ENSG00000138346|P51530-2|DNA2;nc|ENSG00000138346|P51530-3|DNA2;nc|ENSG00000138346|P51530-4|DNA2;ENSG00000138346|ENST00000358410|DNA2	nc|ENSG00000138346|P51530-2|DNA2	nc|ENSG00000138346|P51530-2|DNA2	MULTI-MATCH	A375_MHC_IP_R2	2		2	609.32987	1216.64519	-0.28465	-0.00017345	0.049008	2.9862E-05	-0.23564	-0.00014358	609.8314521607196	85.736	0.50835	86.472	86.137	86.645	0.73602	-0.00022981	-0.00022426	NaN	34.222	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3961500			42231	4980	31026	31275							0.045530687062409925
RAEKQYKQKL	10	Unmodified	_RAEKQYKQKL_					0	0	0			REV__ENSG00000134802|ENST00000395124|SLC43A3	REV__ENSG00000134802|ENST00000395124|SLC43A3	MULTI-SECPEP	A375_MHC_IP_R1	1	645.792236328125	2	646.377686	1290.74082	-0.64034	-0.0004139	0.3705	0.00023948	-0.26983	-0.00017442	646.8791727761447	133.58	0.25478	133.58	133.41	133.66	0					6	4	2	0	0	0	0.94598	1	51471	51471		3.2813	0	1	1326200	+		42232	18801	31027	31276	41147	41147					0.10707841617113445
RAEKTFSV	8	Unmodified	_RAEKTFSV_					0	0	0		nc|ENSG00000147481|Q9NSN8-2|SNTG1;ENSG00000147481|ENST00000642720|SNTG1	nc|ENSG00000147481|Q9NSN8-2|SNTG1	nc|ENSG00000147481|Q9NSN8-2|SNTG1	MULTI-MSMS	A375_MHC_IP_R1	1	469.6584777832031	2	469.258717	936.50288	-0.22	-0.00010324	0.39386	0.00018482	0.17387	8.1588E-05	469.2586225921134	51.366	0.76188	51.366	50.966	51.728	0					20	14	2	0	0	0	0.42086	1	18224	18224		52.268	2.3353	1	2928000			42233	5687	31028	31277	41148	41148					0.0320890075471425
RAEKTFSV	8	Unmodified	_RAEKTFSV_					0	0	0		nc|ENSG00000147481|Q9NSN8-2|SNTG1;ENSG00000147481|ENST00000642720|SNTG1	nc|ENSG00000147481|Q9NSN8-2|SNTG1	nc|ENSG00000147481|Q9NSN8-2|SNTG1	MULTI-MSMS	A375_MHC_IP_R2	2	469.658203125	2	469.258717	936.50288	-0.76161	-0.00035739	1.5172	0.00071194	0.75555	0.00035455	469.2586148680779	50.494	0.7594	51.248	50.753	51.513	0.75406					26	14	3	0	0	0	0.42086	1	18973	18973		52.268	0.63854	1	3352600			42234	5687	31028	31277	41149	41149					0.0320890075471425
RAEKTFSV	8	Unmodified	_RAEKTFSV_					0	0	0		nc|ENSG00000147481|Q9NSN8-2|SNTG1;ENSG00000147481|ENST00000642720|SNTG1	nc|ENSG00000147481|Q9NSN8-2|SNTG1	nc|ENSG00000147481|Q9NSN8-2|SNTG1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	469.258717	936.50288	-0.22	-0.00010324	0.39386	0.00018482	0.17387	8.1588E-05	469.2586225921134	51.366	0.76188	51.366	50.966	51.728	0	0.058671	-0.0002487	NaN	52.268	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2928000			42235	5687	31028	31277							0.0320890075471425
RAEVHRLVVV	10	Unmodified	_RAEVHRLVVV_					0	0	0		nc|ENSG00000106617|Q9UGJ0-2|PRKAG2;nc|ENSG00000106617|Q9UGJ0-3|PRKAG2;ENSG00000106617|ENST00000287878|PRKAG2;PRKAG2|p.V525I|1|0.13|ENSG00000106617|chr7:151564089-151564089|C/T|missense_variant	nc|ENSG00000106617|Q9UGJ0-2|PRKAG2	nc|ENSG00000106617|Q9UGJ0-2|PRKAG2	MULTI-MSMS	A375_MHC_IP_R1	1	393.6430969238281	3	393.243652	1176.70913	-0.26633	-0.00010473	-0.71164	-0.00027985	-0.97797	-0.00038458	393.2433046849868	138.91	0.65524	138.91	138.71	139.37	0					33	12	4	0	0	0	0.72574	1	53411	53411		0.77653	0	1	3715300			42236	2702	31029	31278	41150	41150					0.12783893653841005
RAEVHRLVVV	10	Unmodified	_RAEVHRLVVV_					0	0	0		nc|ENSG00000106617|Q9UGJ0-2|PRKAG2;nc|ENSG00000106617|Q9UGJ0-3|PRKAG2;ENSG00000106617|ENST00000287878|PRKAG2;PRKAG2|p.V525I|1|0.13|ENSG00000106617|chr7:151564089-151564089|C/T|missense_variant	nc|ENSG00000106617|Q9UGJ0-2|PRKAG2	nc|ENSG00000106617|Q9UGJ0-2|PRKAG2	MULTI-MSMS	A375_MHC_IP_R2	2	393.64337158203125	3	393.243652	1176.70913	0.0092372	3.6325E-06	-0.71694	-0.00028193	-0.7077	-0.0002783	393.24334803812224	138.9	0.85155	138.96	138.65	139.5	0.059921					28	16	4	0	0	0	0.72574	1	54437	54437		0.77653	0	1	3451900			42237	2702	31029	31278	41151	41151					0.12783893653841005
RAFEPLRSF	9	Unmodified	_RAFEPLRSF_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-SECPEP	A375_MHC_IP_R2	2	562.2056884765625	2	561.806365	1121.59818	-0.72909	-0.00040961	0.38503	0.00021631	-0.34406	-0.00019329	561.8064487433036	55.003	0.51091	55.754	55.422	55.933	0.75075					23	9	3	0	0	0	0.36673	1	20781	20781		38.615	26.374	1	5522100			42238	9060	31030	31279	41152	41152					0.04224253945744749
RAFFDNRNL	9	Unmodified	_RAFFDNRNL_					0	0	0		nc|ENSG00000088992|Q96BS2-2|TESC;ENSG00000088992|ENST00000335209|TESC	nc|ENSG00000088992|Q96BS2-2|TESC	nc|ENSG00000088992|Q96BS2-2|TESC	MULTI-SECPEP	A375_MHC_IP_R2	2	385.26806640625	3	384.868473	1151.58359	-0.17349	-6.677E-05	0.11979	4.6103E-05	-0.053698	-2.0667E-05	384.8684741580484	45.359	0.50654	46.124	45.796	46.303	0.76519					17	9	2	0	0	0	0.087712	1	16948	16948		53.317	43.001	1	6891600			42239	14495	31031	31280	41153	41153					0.013861817976021484
RAFFNSFPGL	10	Unmodified	_RAFFNSFPGL_					0	0	0			REV__ENSG00000132405|ENST00000409757|TBC1D14	REV__ENSG00000132405|ENST00000409757|TBC1D14	MULTI-SECPEP	A375_MHC_IP_R2	2	385.26806640625	3	385.869703	1154.58728	-0.14996	-5.7863E-05	2.2233	0.00085791	2.0734	0.00080005	385.87066019444785	45.633	0.50524	46.398	45.947	46.453	0.76518					12	9	2	0	0	0	0.92957	1	16948	16948		1.5923	0	1	807330	+		42240	18650	31032	31281	41154	41154					0.016168515714753084
RAFFSEVERRF	11	Unmodified	_RAFFSEVERRF_					0	0	0		ENSG00000170515|ENST00000303305|PA2G4;nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENST00000552266.1_1_12:56504402-56504480:+|nuORF	ENSG00000170515|ENST00000303305|PA2G4	ENSG00000170515|ENST00000303305|PA2G4	MULTI-MSMS	A375_MHC_IP_R1	1	482.6558837890625	3	481.921237	1442.74188	-0.27047	-0.00013035	0.33022	0.00015914	0.059751	2.8795E-05	481.9211427168337	56.015	1.0164	56.015	55.431	56.447	0					46	19	5	0	0	0	0.61069	1	20036	20036		22.486	15.863	1	18947000			42241	7515	31033	31282	41155	41155					0.038220559860064895
RAFGFSHL	8	Unmodified	_RAFGFSHL_					0	0	0		ENSG00000167770|ENST00000538426|OTUB1;ENST00000301453.7_1_11:63753886-63764121:+|nuORF	ENSG00000167770|ENST00000538426|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	MULTI-SECPEP	A375_MHC_IP_R1	1	468.1480712890625	2	467.748319	933.482085	0.014093	6.5921E-06	-0.48944	-0.00022893	-0.47534	-0.00022234	467.7480949832759	48.228	0.30491	48.228	48.02	48.325	0					12	5	3	0	0	0	0.4193	1	16979	16979		49.933	15.746	1	3095000			42242	7222	31034	31283	41156	41156					0.01268355165700541
RAFGFSHL	8	Unmodified	_RAFGFSHL_					0	0	0		ENSG00000167770|ENST00000538426|OTUB1;ENST00000301453.7_1_11:63753886-63764121:+|nuORF	ENSG00000167770|ENST00000538426|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	MULTI-MSMS	A375_MHC_IP_R2	2	468.1484069824219	2	467.748319	933.482085	-0.43795	-0.00020485	0.12788	5.9814E-05	-0.31007	-0.00014503	467.7483453655729	47.166	0.4082	47.927	47.715	48.123	0.76128					17	7	3	0	0	0	0.36021	1	17684	17684		54.774	14.325	1	3076000			42243	7222	31034	31283	41157	41157					0.01268355165700541
RAFGFSHL	8	Unmodified	_RAFGFSHL_					0	0	0		ENSG00000167770|ENST00000538426|OTUB1;ENST00000301453.7_1_11:63753886-63764121:+|nuORF	ENSG00000167770|ENST00000538426|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	467.748319	933.482085	-0.43795	-0.00020485	0.12788	5.9814E-05	-0.31007	-0.00014503	467.7483453655729	47.166	0.4082	47.927	47.715	48.123	0.76128	-0.15036	0.00026792	NaN	54.774	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3076000			42244	7222	31034	31283							0.01268355165700541
RAFIPEML	8	Unmodified	_RAFIPEML_					0	0	0		nc|ENSG00000106459|Q16656-2|NRF1;ENSG00000106459|ENST00000393232|NRF1;nc|ENSG00000106459|Q16656-4|NRF1;nc|ENSG00000106459|Q16656-3|NRF1	nc|ENSG00000106459|Q16656-2|NRF1	nc|ENSG00000106459|Q16656-2|NRF1	MULTI-MSMS	A375_MHC_IP_R2	2	489.1677551269531	2	488.767863	975.521173	-0.61763	-0.00030188	-2.7831	-0.0013603	-3.4007	-0.0016622	488.76707213542767	66.862	1.4756	67.599	67.29	68.766	0.73631					62	28	4	0	0	0	0.77123	1	25286	25286		14.582	1.0738	1	3718800			42245	2691	31035	31284	41158	41158					0.032433194050668135
RAFKINEL	8	Unmodified	_RAFKINEL_					0	0	0		ENSG00000160191|ENST00000291539|PDE9A;nc|ENSG00000160191|O76083-16|PDE9A;nc|ENSG00000160191|O76083-15|PDE9A;nc|ENSG00000160191|O76083-14|PDE9A;nc|ENSG00000160191|O76083-2|PDE9A;nc|ENSG00000160191|O76083-13|PDE9A;nc|ENSG00000160191|O76083-8|PDE9A;nc|ENSG00000160191|O76083-6|PDE9A;ENST00000470987.5_1_21:44117526-44195400:+|nuORF;nc|ENSG00000160191|O76083-3|PDE9A;nc|ENSG00000160191|O76083-4|PDE9A;nc|ENSG00000160191|O76083-11|PDE9A;nc|ENSG00000160191|O76083-9|PDE9A;nc|ENSG00000160191|O76083-12|PDE9A;nc|ENSG00000160191|O76083-5|PDE9A;ENST00000467162.5_1_21:44106337-44153535:+|nuORF;ENST00000495343.5_1_21:44151932-44153535:+|nuORF;ENST00000460989.5_1_21:44073976-44153535:+|nuORF;ENST00000495521.5_1_21:44073924-44153535:+|nuORF	ENSG00000160191|ENST00000291539|PDE9A	ENSG00000160191|ENST00000291539|PDE9A	MULTI-SECPEP	A375_MHC_IP_R2	2	496.18988037109375	2	495.790184	989.565815	-0.40416	-0.00020038	-0.32136	-0.00015933	-0.72552	-0.00035971	495.79003420756555	42.369	0.35581	43.141	43.014	43.369	0.7724					12	6	2	0	0	0	0.95423	1	15789	15789		18.135	6.4947	1	2182300			42246	6402	31036	31285	41159	41159					0.0706146654274562
RAFPNKQGY	9	Unmodified	_RAFPNKQGY_					0	0	0		nc|ENSG00000154473|O43684-2|BUB3;ENSG00000154473|ENST00000368865|BUB3	nc|ENSG00000154473|O43684-2|BUB3	nc|ENSG00000154473|O43684-2|BUB3	MULTI-MSMS	A375_MHC_IP_R1	1	541.1825561523438	2	540.78289	1079.55123	-0.70202	-0.00037964	0.36174	0.00019562	-0.34028	-0.00018402	540.7829042049079	19.857	0.76088	19.857	19.368	20.129	0					22	14	2	0	0	0	0.12592	1	5078	5078		46.021	31.439	1	1356300			42247	6090	31037	31286	41160	41160					0.014633943946137151
RAFPRKKRKKP	11	Unmodified	_RAFPRKKRKKP_					0	0	0		nc|ENSG00000186376|P51815-2|ZNF75D;ENSG00000186376|ENST00000370766|ZNF75D	nc|ENSG00000186376|P51815-2|ZNF75D	nc|ENSG00000186376|P51815-2|ZNF75D	MSMS	A375_MHC_IP_R2	2	706.8003540039062	2	706.459679	1410.90481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.61	1	144.63	144.13	145.13	0.024414								0	0	0	0.16354	1	56481	56481		0.30703	0	1				42248	8744	31038	31287	41161	41161					0.2157890389851218
RAFQAHKEENW	11	Unmodified	_RAFQAHKEENW_					0	0	0		nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2;ENST00000480971.5_1_13:113839853-113862948:-|nuORF;ENST00000491548.5_1_13:113845184-113862948:-|nuORF;ENST00000475433.5_1_13:113838773-113862921:-|nuORF	nc|ENSG00000126226|Q5JVF3-2|PCID2	nc|ENSG00000126226|Q5JVF3-2|PCID2	MULTI-MSMS	A375_MHC_IP_R1	1	473.29925537109375	3	472.565342	1414.6742	-0.1787	-8.4449E-05	-0.2923	-0.00013813	-0.471	-0.00022258	472.56515072180304	21.547	0.5587	21.547	21.199	21.757	0					26	10	4	0	0	0	0.28731	1	5646	5646		47.724	38.973	1	4307300			42249	4031	31039	31288	41162	41162					-0.01655393944770367
RAFQAHKEENW	11	Unmodified	_RAFQAHKEENW_					0	0	0		nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2;ENST00000480971.5_1_13:113839853-113862948:-|nuORF;ENST00000491548.5_1_13:113845184-113862948:-|nuORF;ENST00000475433.5_1_13:113838773-113862921:-|nuORF	nc|ENSG00000126226|Q5JVF3-2|PCID2	nc|ENSG00000126226|Q5JVF3-2|PCID2	MULTI-MSMS	A375_MHC_IP_R2	2	472.96478271484375	3	472.565342	1414.6742	-0.87536	-0.00041366	0.15724	7.4308E-05	-0.71811	-0.00033936	472.56529233947134	19.788	0.65826	20.399	19.993	20.651	0.61029					34	12	4	0	0	0	0.36066	1	6039	6039		42.068	42.068	1	3799500			42250	4031	31039	31288	41163	41163					-0.01655393944770367
RAFQPLTGW	9	Unmodified	_RAFQPLTGW_					0	0	0		nc|ENSG00000213397|Q99871-2|HAUS7;ENST00000437046.6_1_X:152713338-152720565:-|nuORF;ENST00000484394.5_1_X:152720163-152720565:-|nuORF	nc|ENSG00000213397|Q99871-2|HAUS7	nc|ENSG00000213397|Q99871-2|HAUS7	MULTI-SECPEP	A375_MHC_IP_R1	1	538.2237548828125	2	538.287808	1074.56106	-0.71665	-0.00038576	-0.35359	-0.00019033	-1.0702	-0.00057609	538.2878825345439	83.53	0.50948	83.53	83.226	83.736	0					15	9	2	0	0	0	0.63327	1	30523	30523		24.021	2.2739	1	1201800			42251	14894	31040	31289	41164	41164					0.02676582399999461
RAFQVLRPL	9	Unmodified	_RAFQVLRPL_					0	0	0		CACNA1S|p.R168Q|1|0.22|ENSG00000081248|chr1:201092010-201092010|C/T|missense_variant	CACNA1S|p.R168Q|1|0.22|ENSG00000081248|chr1:201092010-201092010|C/T|missense_variant	CACNA1S|p.R168Q|1|0.22|ENSG00000081248|chr1:201092010-201092010|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	367.610107421875	3	367.229342	1098.6662	0.39012	0.00014326	-0.7588	-0.00027866	-0.36869	-0.00013539	367.2278980058618	20.545	0.76493	20.545	20.232	20.997	0					40	14	6	0	0	0	0.75032	1	5189	5189		2.4985	0	1	2159700			42252	279	31041	31290	41165	41165					0.12081123596408361
RAFSFRTV	8	Unmodified	_RAFSFRTV_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;MYO1B|p.L1009Pfs*6|1|0.14|ENSG00000128641|chr2:191414529-191414530|-/T|frameshift_variant;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-SECPEP	A375_MHC_IP_R1	1	492.674072265625	2	492.274701	982.534849	-0.68781	-0.00033859	0.032066	1.5785E-05	-0.65574	-0.00032281	492.2746632058009	41.546	0.40868	41.546	41.317	41.725	0					17	7	3	0	0	0	0.91117	1	14378	14378		27.629	9.4938	1	5023200			42253	14591	31042	31291	41166	41166					0.04288313228516927
RAFWRNVQF	9	Unmodified	_RAFWRNVQF_					0	0	0		chr17:79950594-79950756|434|26.28|0.23|6.83|-|ENST00000574427|TBC1D16,TBC1D16;ENSG00000167291.16,TBC1D16,chr17,-,I5.1,79952196,79952656|182|8.39|11|intron;ENSG00000167291.16,TBC1D16,chr17,-,I5.1,79952196,79952656|182|8.39|7|intron;ENSG00000167291.16,TBC1D16,chr17,-,I5.1,79952196,79952656|182|8.39|4|intron;ENSG00000167291.16,TBC1D16,chr17,-,I5.1,79952196,79952656|182|8.39|10|intron;ENSG00000167291.16,TBC1D16,chr17,-,I5.1,79952196,79952656|182|8.39|2|intron;ENSG00000167291.16,TBC1D16,chr17,-,I5.1,79952196,79952656|182|8.39|1|intron;ENSG00000167291.16,TBC1D16,chr17,-,I5.1,79952196,79952656|182|8.39|8|intron;ENSG00000167291.16,TBC1D16,chr17,-,I5.1,79952196,79952656|182|8.39|6|intron;nc|ENSG00000167291|Q8TBP0-3|TBC1D16;ENSG00000167291.16,TBC1D16,chr17,-,I5.1,79952196,79952656|182|8.39|5|intron;ENSG00000167291.16,TBC1D16,chr17,-,I5.1,79952196,79952656|182|8.39|9|intron;ENSG00000167291.16,TBC1D16,chr17,-,I5.1,79952196,79952656|182|8.39|3|intron;nc|ENSG00000167291|Q8TBP0-2|TBC1D16;chr17:79950578-79950756|449|70.56|0.64|6.78|-|ENST00000576768|TBC1D16,TBC1D16;nc|ENSG00000167291|Q8TBP0-4|TBC1D16;ENSG00000167291|ENST00000310924|TBC1D16	chr17:79950594-79950756|434|26.28|0.23|6.83|-|ENST00000574427|TBC1D16,TBC1D16	chr17:79950594-79950756|434|26.28|0.23|6.83|-|ENST00000574427|TBC1D16,TBC1D16	MULTI-SECPEP	A375_MHC_IP_R1	1	408.6229248046875	3	408.552597	1222.63596	-0.38813	-0.00015857	0.92225	0.00037679	0.53412	0.00021822	408.55296313899686	66.883	0.51028	66.883	66.632	67.143	0					14	9	2	0	0	0	0.58271	1	24263	24263		19.362	11.753	1	2146500			42254	448	31043	31292	41167	41167					0.03354764931191312
RAFWRNVQF	9	Unmodified	_RAFWRNVQF_					0	0	0		chr17:79950594-79950756|434|26.28|0.23|6.83|-|ENST00000574427|TBC1D16,TBC1D16;ENSG00000167291.16,TBC1D16,chr17,-,I5.1,79952196,79952656|182|8.39|11|intron;ENSG00000167291.16,TBC1D16,chr17,-,I5.1,79952196,79952656|182|8.39|7|intron;ENSG00000167291.16,TBC1D16,chr17,-,I5.1,79952196,79952656|182|8.39|4|intron;ENSG00000167291.16,TBC1D16,chr17,-,I5.1,79952196,79952656|182|8.39|10|intron;ENSG00000167291.16,TBC1D16,chr17,-,I5.1,79952196,79952656|182|8.39|2|intron;ENSG00000167291.16,TBC1D16,chr17,-,I5.1,79952196,79952656|182|8.39|1|intron;ENSG00000167291.16,TBC1D16,chr17,-,I5.1,79952196,79952656|182|8.39|8|intron;ENSG00000167291.16,TBC1D16,chr17,-,I5.1,79952196,79952656|182|8.39|6|intron;nc|ENSG00000167291|Q8TBP0-3|TBC1D16;ENSG00000167291.16,TBC1D16,chr17,-,I5.1,79952196,79952656|182|8.39|5|intron;ENSG00000167291.16,TBC1D16,chr17,-,I5.1,79952196,79952656|182|8.39|9|intron;ENSG00000167291.16,TBC1D16,chr17,-,I5.1,79952196,79952656|182|8.39|3|intron;nc|ENSG00000167291|Q8TBP0-2|TBC1D16;chr17:79950578-79950756|449|70.56|0.64|6.78|-|ENST00000576768|TBC1D16,TBC1D16;nc|ENSG00000167291|Q8TBP0-4|TBC1D16;ENSG00000167291|ENST00000310924|TBC1D16	chr17:79950594-79950756|434|26.28|0.23|6.83|-|ENST00000574427|TBC1D16,TBC1D16	chr17:79950594-79950756|434|26.28|0.23|6.83|-|ENST00000574427|TBC1D16,TBC1D16	MULTI-MSMS	A375_MHC_IP_R2	2	408.9522705078125	3	408.552597	1222.63596	-0.18803	-7.6821E-05	-0.29752	-0.00012155	-0.48555	-0.00019837	408.5524465150589	65.967	0.56015	66.706	66.425	66.985	0.73811					17	10	2	0	0	0	0.2415	1	25023	25023		34.932	19.394	1	2957500			42255	448	31043	31292	41168	41168					0.03354764931191312
RAGGRGAGVRR	11	Unmodified	_RAGGRGAGVRR_					0	0	0			REV__ENST00000411948.6_1_1:244998882-244999008:+|nuORF	REV__ENST00000411948.6_1_1:244998882-244999008:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	372.3013610839844	3	371.555112	1111.64351	0.29054	0.00010795	2.8426	0.0010562	3.1332	0.0011641	371.5559900993252	33.062	0.25525	33.814	33.686	33.942	0.75225					6	4	2	0	0	0	0.99331	1	11764	11764		4.4062	0	1	701640	+		42256	24483	31044	31293	41169	41169					0.09214917251506449
RAGKGRPS	8	Unmodified	_RAGKGRPS_					0	0	0			REV__ENST00000438058.5_1_22:39150683-39151934:-|nuORF	REV__ENST00000438058.5_1_22:39150683-39151934:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	414.1482238769531	2	414.743568	827.472583	0.36987	0.0001534	-0.396	-0.00016424	-0.026126	-1.0835E-05	414.7433306195982	100.91	1.9746	100.91	99.975	101.95	0					65	38	2	0	0	0	0.972	1	37223	37223		4.3292	1.7518	1	4916500	+		42257	24776	31045	31294	41170	41170					0.05194586880179486
RAGKGRPS	8	Unmodified	_RAGKGRPS_					0	0	0			REV__ENST00000438058.5_1_22:39150683-39151934:-|nuORF	REV__ENST00000438058.5_1_22:39150683-39151934:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	414.743568	827.472583	0.20479	8.4936E-05	-0.062963	-2.6113E-05	0.14183	5.8822E-05	414.7434141449431	100.24	2.0415	101.01	100.02	102.06	0.76278	0.046917	0.00014176	NaN	4.3292	75	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3821500	+		42258	24776	31045	31294							0.05194586880179486
RAGKVAHS	8	Unmodified	_RAGKVAHS_					0	0	0		ENST00000560141.2_1_15:45021411-45021504:+|nuORF	ENST00000560141.2_1_15:45021411-45021504:+|nuORF	ENST00000560141.2_1_15:45021411-45021504:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	413.6380615234375	2	413.238119	824.461684	0.042849	1.7707E-05	0.14644	6.0515E-05	0.18929	7.8222E-05	413.2380822109322	98.042	4.3213	98.802	97.169	101.49	0.75977					145	84	3	0	0	0	0.77717	1	36989	36989		5.2307	0	1	9036200			42259	13485	31046	31295	41171	41171					0.04243184505901354
RAGKVAHS	8	Unmodified	_RAGKVAHS_					0	0	0		ENST00000560141.2_1_15:45021411-45021504:+|nuORF	ENST00000560141.2_1_15:45021411-45021504:+|nuORF	ENST00000560141.2_1_15:45021411-45021504:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	413.63824462890625	2	413.238119	824.461684	0.080895	3.3429E-05	0.037585	1.5532E-05	0.11848	4.8961E-05	413.2380504480282	101.27	2.9545	102.04	101.39	104.35	0.76428					135	57	3	0	0	0	0.7766	1	38633	38633		7.2892	2.0586	1	9805800			42260	13485	31046	31295	41172	41172					0.04243184505901354
RAGPGTPR	8	Unmodified	_RAGPGTPR_					0	0	0		ENST00000564480.1_2_16:19729090-19729441:-|nuORF	ENST00000564480.1_2_16:19729090-19729441:-|nuORF	ENST00000564480.1_2_16:19729090-19729441:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	406.6302490234375	2	406.230294	810.446034	0.21579	8.7659E-05	-0.060836	-2.4713E-05	0.15495	6.2945E-05	406.2301960415241	100.29	2.6511	101.06	100.07	102.72	0.76278					90	51	3	0	0	0	0.7766	1	37806	37806		7.2892	0	1	4447100			42261	13532	31047	31296	41173	41173					0.03322897988846307
RAGPLSGKKF	10	Unmodified	_RAGPLSGKKF_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.Y425Lfs*24|1|0.13|ENSG00000108654|chr17:64500716-64500717|-/A|frameshift_variant;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000585223.1_1_17:62500698-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	A375_MHC_IP_R1	1	354.6134948730469	3	354.213581	1059.61891	-0.06293	-2.2291E-05	0.096399	3.4146E-05	0.033469	1.1855E-05	354.2135882278911	19.951	1.1695	19.951	19.521	20.69	0					60	22	4	0	0	0	0.29004	2	4952	4952;5137		40.714	23.601	1	47996000			42262	2826	31048	31297	41174;41175	41174					0.09148844325432037
RAGPLSGKKF	10	Unmodified	_RAGPLSGKKF_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.Y425Lfs*24|1|0.13|ENSG00000108654|chr17:64500716-64500717|-/A|frameshift_variant;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000585223.1_1_17:62500698-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	A375_MHC_IP_R1	1	354.61358642578125	3	354.213581	1059.61891	0.31032	0.00010992	-0.16452	-5.8276E-05	0.1458	5.1645E-05	354.2135082067677	22.242	0.86309	22.242	21.86	22.723	0					20	16	2	0	0	0	0.36923	1	5954	5954		35.996	18.553	1	3997800			42263	2826	31048	31297	41176	41176					0.09148844325432037
RAGPLSGKKF	10	Unmodified	_RAGPLSGKKF_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.Y425Lfs*24|1|0.13|ENSG00000108654|chr17:64500716-64500717|-/A|frameshift_variant;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000585223.1_1_17:62500698-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	A375_MHC_IP_R2	2	354.61328125	3	354.213581	1059.61891	-0.48954	-0.0001734	0.17045	6.0376E-05	-0.31909	-0.00011303	354.2135395240309	18.955	0.41046	19.559	19.423	19.833	0.60308					25	9	4	0	0	0	0.034789	1	5727	5727		80.24	52.611	1	67615000			42264	2826	31048	31297	41177	41177					0.09148844325432037
RAGPLSGKKF	10	Unmodified	_RAGPLSGKKF_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.Y425Lfs*24|1|0.13|ENSG00000108654|chr17:64500716-64500717|-/A|frameshift_variant;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000585223.1_1_17:62500698-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MATCH	A375_MHC_IP_R2	2		3	354.213581	1059.61891	-0.56176	-0.00019898	0.33979	0.00012036	-0.22197	-7.8624E-05	354.2137177381382	21.658	0.35764	22.277	22.132	22.49	0.61932	0.017699	0.00036404	NaN	35.996	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1690700			42265	2826	31048	31297							0.09148844325432037
RAGQEHLLRFW	11	Unmodified	_RAGQEHLLRFW_					0	0	0		ENSG00000197355|ENST00000409858|UAP1L1	ENSG00000197355|ENST00000409858|UAP1L1	ENSG00000197355|ENST00000409858|UAP1L1	MULTI-SECPEP	A375_MHC_IP_R2	2	470.9085388183594	3	471.58971	1411.7473	-0.96975	-0.00045732	-0.62468	-0.00029459	-1.5944	-0.00075192	471.58949300729233	26.496	0.25436	27.156	26.957	27.212	0.65992					6	4	2	0	0	0	0.99482	1	8917	8917		9.2438	2.6203	1	1262000			42266	9148	31049	31298	41178	41178					0.057897795684766606
RAGRRRTVK	9	Unmodified	_RAGRRRTVK_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-MSMS	A375_MHC_IP_R2	2	367.3001403808594	3	367.23549	1098.68464	-0.18192	-6.6806E-05	-3.4152	-0.0012542	-3.5971	-0.001321	367.2342441345512	23.139	0.20366	23.769	23.675	23.878	0.63015					5	3	2	0	0	0	0.75274	1	7432	7432		2.2828	0.5405	1	1371600	+		42267	22122	31050	31299	41179	41179					0.1392467829098223
RAGSQRRDVC	10	Unmodified	_RAGSQRRDVC_					0	0	0		ENST00000418587.6_1_5:150283520-150284330:-|nuORF	ENST00000418587.6_1_5:150283520-150284330:-|nuORF	ENST00000418587.6_1_5:150283520-150284330:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	383.243896484375	3	383.196484	1146.56762	-0.38248	-0.00014657	-0.41974	-0.00016084	-0.80222	-0.00030741	383.1963234213576	23.829	1.7799	24.459	23.521	25.301	0.63014					67	34	2	0	0	0	0.70651	1	7304	7304		5.4027	0.35519	1	12867000			42268	11710	31051	31300	41180	41180					0.00020152289062025375
RAGVKVRWQ	9	Unmodified	_RAGVKVRWQ_					0	0	0		ENSG00000134571|ENST00000545968|MYBPC3;nc|ENSG00000134571|Q14896-2|MYBPC3;MYBPC3|p.E34K|1|0.52|ENSG00000134571|chr11:47351431-47351431|C/T|missense_variant	ENSG00000134571|ENST00000545968|MYBPC3	ENSG00000134571|ENST00000545968|MYBPC3	MULTI-SECPEP	A375_MHC_IP_R2	2	366.9329528808594	3	367.220958	1098.64105	-0.20444	-7.5076E-05	0.99358	0.00036486	0.78914	0.00028979	367.22139540282694	22.967	0.25497	23.597	23.42	23.675	0.63014					6	4	2	0	0	0	0.76187	1	7295	7295		7.609	0.31972	1	1093900			42269	4588	31052	31301	41181	41181					0.0956706879385365
RAGVLAHL	8	Unmodified	_RAGVLAHL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	nc|ENSG00000133026|P35580|MYH10;ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-SECPEP	A375_MHC_IP_R1	1	418.2995910644531	2	418.758687	835.502821	0.22913	9.5952E-05	-0.13414	-5.6173E-05	0.094992	3.9779E-05	418.75858647689967	35.052	0.96825	35.052	34.759	35.727	0					45	18	4	0	0	0	0.64068	1	11713	11713		40.449	6.2612	1	59678000			42270	2162;4474	31053	31302	41182	41182					0.078489455453564
RAGVLAHL	8	Unmodified	_RAGVLAHL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	nc|ENSG00000133026|P35580|MYH10;ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-SECPEP	A375_MHC_IP_R2	2	419.15869140625	2	418.758687	835.502821	-0.50144	-0.00020998	0.14019	5.8705E-05	-0.36125	-0.00015128	418.75871762268235	34.025	0.86411	34.778	34.5	35.364	0.75225					31	16	4	0	0	0	0.82569	1	12192	12192		36.466	2.2788	1	90913000			42271	2162;4474	31053	31302	41183	41183					0.078489455453564
RAGWRRKRRRR	11	Unmodified	_RAGWRRKRRRR_					0	0	0		ENST00000389672.9_1_3:96533549-96533720:+|nuORF	ENST00000389672.9_1_3:96533549-96533720:+|nuORF	ENST00000389672.9_1_3:96533549-96533720:+|nuORF	MSMS	A375_MHC_IP_R1	1	777.390869140625	2	777.482874	1552.9512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.57	1	149.57	149.07	150.07	0								0	0	0	0.1636	1	57076	57076		0	0	1				42272	11401	31054	31303	41184	41184					0.19683781573166925
RAHDPLYGSW	10	Unmodified	_RAHDPLYGSW_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000509676.1_1_4:2934766-2935650:-|nuORF	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-SECPEP	A375_MHC_IP_R2	2	401.296142578125	3	401.196478	1200.56761	-0.21846	-8.7646E-05	-0.12922	-5.1843E-05	-0.34768	-0.00013949	401.1964664455081	49.081	0.76208	49.838	49.485	50.247	0.75737					19	14	2	0	0	0	0.91643	1	18456	18456		11.065	8.6305	1	2621300			42273	2887	31055	31304	41185	41185					-0.024655244392988607
RAIDFSPYL	9	Unmodified	_RAIDFSPYL_					0	0	0		nc|ENSG00000172216|P17676-2|CEBPB;ENSG00000172216|ENST00000303004|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	MULTI-MSMS	A375_MHC_IP_R1	1	542.3260498046875	2	541.287474	1080.5604	-0.59751	-0.00032342	0.39768	0.00021526	-0.19983	-0.00010817	541.2876396266392	91.776	0.91057	91.776	91.401	92.312	0					41	17	4	0	0	0	0.34064	1	33766	33766		27.629	2.2295	1	12410000			42274	7691	31056	31305	41186	41186					0.023337429602634074
RAIDFSPYL	9	Unmodified	_RAIDFSPYL_					0	0	0		nc|ENSG00000172216|P17676-2|CEBPB;ENSG00000172216|ENST00000303004|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	MULTI-MSMS	A375_MHC_IP_R2	2	541.6864624023438	2	541.287474	1080.5604	-0.73825	-0.00039961	0.047374	2.5643E-05	-0.69088	-0.00037396	541.2875112415456	91.012	0.80969	91.747	91.362	92.172	0.7345					37	15	3	0	0	0	0.13845	1	34589	34589		43.772	5.7984	1	12351000			42275	7691	31056	31305	41187	41187					0.023337429602634074
RAIDSIHQL	9	Unmodified	_RAIDSIHQL_					0	0	0		nc|ENSG00000104885|Q8TEK3-1|DOT1L;ENSG00000104885|ENST00000398665|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	MULTI-MSMS	A375_MHC_IP_R1	1	527.1953735351562	2	526.795998	1051.57744	-0.35413	-0.00018655	-0.19277	-0.00010155	-0.5469	-0.0002881	526.7958691727589	35.294	0.40668	35.294	35.116	35.522	0					14	7	2	0	0	0	0.32889	1	11744	11744		28.495	4.4739	1	4731600			42276	14521	31057	31306	41188	41188					0.05371663566097595
RAIDSIHQLW	10	Unmodified	_RAIDSIHQLW_					0	0	0		nc|ENSG00000104885|Q8TEK3-1|DOT1L;ENSG00000104885|ENST00000398665|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	MULTI-SECPEP	A375_MHC_IP_R2	2	414.29705810546875	3	413.559528	1237.65676	-0.089921	-3.7188E-05	2.9372	0.0012147	2.8473	0.0011775	413.55937323190943	66.685	0.61127	67.421	67.087	67.698	0.73631					29	11	4	0	0	0	0.76455	1	25250	25250		27.129	21.345	1	4157800			42277	14521	31058	31307	41189	41189					0.04743310520234445
RAIEAGLELY	10	Unmodified	_RAIEAGLELY_					0	0	0			REV__MAN1A2|p.A520Gfs*7|1|0.13|ENSG00000198162|chr1:117499435-117499436|-/GAGC|frameshift_variant	REV__MAN1A2|p.A520Gfs*7|1|0.13|ENSG00000198162|chr1:117499435-117499436|-/GAGC|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	379.27655029296875	3	378.876634	1133.60807	-0.27644	-0.00010473	0.40554	0.00015365	0.1291	4.8913E-05	378.87685212233345	38.515	1.0192	39.289	38.946	39.965	0.77451					59	19	5	0	0	0	0.81532	1	14132	14132		17.049	2.6432	1	63993000	+		42278	22348	31059	31308	41190	41190					0.04661397160475644
RAIEHAYQY	9	Unmodified	_RAIEHAYQY_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4;ENST00000604740.5_1_6:112443215-112450276:-|nuORF	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-MSMS	A375_MHC_IP_R1	1	576.1863403320312	2	575.78563	1149.55671	-0.37806	-0.00021768	0.43416	0.00024999	0.056107	3.2305E-05	575.7859800846534	24.168	0.60635	24.168	23.991	24.597	0					26	11	3	0	0	0	0.024574	3	6824	6794;6824;6944		79.596	45.195	1	28178000			42279	3109	31060	31309	41191;41192;41193	41192					-0.01208926813569633
RAIEHAYQY	9	Unmodified	_RAIEHAYQY_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4;ENST00000604740.5_1_6:112443215-112450276:-|nuORF	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-MSMS	A375_MHC_IP_R2	2	576.7002563476562	2	575.78563	1149.55671	-0.4807	-0.00027678	0.73852	0.00042523	0.25782	0.00014845	575.7861669007099	23.481	0.40466	24.111	23.928	24.333	0.63014					15	7	3	0	0	0	0.14922	1	7564	7564		41.84	25.691	1	21158000			42280	3109	31060	31309	41194	41194					-0.01208926813569633
RAIEYPFRTV	10	Unmodified	_RAIEYPFRTV_					0	0	0			REV__tr|U7STY0|U7STY0_FUSNU4-hydroxybutyryl-CoAdehydratase/vinylacetyl-CoA-Delta-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01228PE=4SV=1	REV__tr|U7STY0|U7STY0_FUSNU4-hydroxybutyryl-CoAdehydratase/vinylacetyl-CoA-Delta-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01228PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	417.13909912109375	3	417.899662	1250.67716	0.15	6.2686E-05	-1.7716	-0.00074036	-1.6216	-0.00067768	417.8986964797457	39.466	0.50702	39.466	39.187	39.694	0					15	9	2	0	0	0	0.93041	1	13588	13588		11.518	7.1117	1	2796400	+		42281	28517	31061	31310	41195	41195					0.061844811800028765
RAILKVSEDP	10	Unmodified	_RAILKVSEDP_					0	0	0		CYB5R1|p.P202S|1|0.59|ENSG00000159348|chr1:202963683-202963683|G/A|missense_variant	CYB5R1|p.P202S|1|0.59|ENSG00000159348|chr1:202963683-202963683|G/A|missense_variant	CYB5R1|p.P202S|1|0.59|ENSG00000159348|chr1:202963683-202963683|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	565.07568359375	2	564.324588	1126.63462	-0.30255	-0.00017074	-0.06647	-3.7511E-05	-0.36902	-0.00020825	564.3244681115667	141.52	1.6373	141.56	140.4	142.04	0.04216					50	31	2	0	0	0	0.93799	1	55082	55082		1.4819	0	1	1160000			42282	690	31062	31311	41196	41196					0.07637086051818187
RAIMPASLPQR	11	Unmodified	_RAIMPASLPQR_					0	0	0			REV__ENST00000502464.5_1_5:65018131-65058826:+|nuORF	REV__ENST00000502464.5_1_5:65018131-65058826:+|nuORF	MSMS	A375_MHC_IP_R2	2	413.94366455078125	3	413.90453	1238.69176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.644	1	44.413	43.913	44.913	0.7691								0	0	0	0.16232	1	16265	16265		6.6235	0.3891	1		+		42283	25500	31063	31312	41197	41197					0.08196230056523746
RAIYSIVLK	9	Unmodified	_RAIYSIVLK_					0	0	0		ENSG00000133019|ENST00000676153|CHRM3	ENSG00000133019|ENST00000676153|CHRM3	ENSG00000133019|ENST00000676153|CHRM3	MULTI-SECPEP	A375_MHC_IP_R1	1	532.236572265625	2	531.837134	1061.65972	-0.56741	-0.00030177	-0.63535	-0.0003379	-1.2028	-0.00063968	531.8369981744578	53.554	0.5603	53.554	53.301	53.861	0					20	10	2	0	0	0	0.75842	1	19110	19110		2.7352	0	1	2743600			42284	4472	31064	31313	41198	41198					0.1313518564502374
RAKAIIVEF	9	Unmodified	_RAKAIIVEF_					0	0	0		ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	MULTI-SECPEP	A375_MHC_IP_R1	1	524.2213745117188	2	523.821484	1045.62842	-0.42562	-0.00022295	0.44376	0.00023245	0.018144	9.5042E-06	523.8217640555781	55.844	0.71215	55.844	55.431	56.143	0					29	13	3	0	0	0	0.35487	1	19957	19957		43.858	19.838	1	10223000			42285	6304	31065	31314	41199	41199					0.10742612610920332
RAKAIIVEF	9	Unmodified	_RAKAIIVEF_					0	0	0		ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	MULTI-SECPEP	A375_MHC_IP_R2	2	524.2213745117188	2	523.821484	1045.62842	-0.71393	-0.00037397	0.43861	0.00022976	-0.27532	-0.00014422	523.8217949227852	54.722	0.71151	55.473	55.118	55.83	0.75075					31	13	3	0	0	0	0.49205	1	20649	20649		34.402	17.289	1	11519000			42286	6304	31065	31314	41200	41200					0.10742612610920332
RAKEYLEFF	9	Unmodified	_RAKEYLEFF_					0	0	0		ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	MULTI-MSMS	A375_MHC_IP_R2	2	401.9448547363281	3	401.544996	1201.61316	-0.045124	-1.8119E-05	0.10297	4.1347E-05	0.057845	2.3227E-05	401.5448586601404	74.377	0.50859	75.115	74.857	75.365	0.73752					23	9	3	0	0	0	0.3489	1	28252	28252		27.223	0	1	2055400			42287	8190	31066	31315	41201	41201					0.020417010230858068
RAKGYDLEL	9	Unmodified	_RAKGYDLEL_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-SECPEP	A375_MHC_IP_R2	2	355.9290771484375	3	355.529346	1063.56621	-0.46902	-0.00016675	0.012956	4.6063E-06	-0.45607	-0.00016215	355.5293081496473	41.168	0.35562	41.942	41.743	42.098	0.77451					9	6	2	0	0	0	0.76827	1	15297	15297		4.1895	0	1	2878100			42288	6139	31067	31316	41202	41202					0.036968414719467546
RAKIPLGF	8	Unmodified	_RAKIPLGF_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-SECPEP	A375_MHC_IP_R1	1	451.6847229003906	2	451.284537	900.554522	-0.018927	-8.5416E-06	0.28728	0.00012965	0.26836	0.00012111	451.2846232729962	53.797	0.45757	53.797	53.555	54.013	0					12	8	2	0	0	0	0.8824	1	19208	19208		30.225	5.5509	1	2271800			42289	3337	31068	31317	41203	41203					0.10026689239282405
RAKIPLGF	8	Unmodified	_RAKIPLGF_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	A375_MHC_IP_R2	2	451.6844177246094	2	451.284537	900.554522	-0.77431	-0.00034943	0.342	0.00015434	-0.4323	-0.00019509	451.284622288522	52.762	0.45539	53.513	53.284	53.739	0.75105					12	8	2	0	0	0	0.71451	1	19938	19938		30.225	5.5509	1	2328300			42290	3337	31068	31317	41204	41204					0.10026689239282405
RAKIPLGFY	9	Unmodified	_RAKIPLGFY_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MSMS	A375_MHC_IP_R2	2	355.5792236328125	3	355.54656	1063.61785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.962	1	30.661	30.161	31.161	0.69872								0	0	0	0.15486	1	10501	10501		2.7352	0	1				42291	3337	31069	31318	41205	41205					0.08858629956534969
RAKLLRTKF	9	Unmodified	_RAKLLRTKF_					0	0	0			REV__ENST00000469973.1_1_1:228328997-228329276:+|nuORF	REV__ENST00000469973.1_1_1:228328997-228329276:+|nuORF	MSMS	A375_MHC_IP_R2	2	378.24713134765625	3	378.248625	1131.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.609	1	94.354	93.854	94.854	0.74474								0	0	0	0.15486	1	35585	35585		1.1933	0.41681	1		+		42292	25099	31070	31319	41206	41206					0.1634538552182221
RAKLPLRIF	9	Unmodified	_RAKLPLRIF_					0	0	0		nc|ENSG00000145284|Q86SK9-2|SCD5;ENSG00000145284|ENST00000319540|SCD5	nc|ENSG00000145284|Q86SK9-2|SCD5	nc|ENSG00000145284|Q86SK9-2|SCD5	MULTI-SECPEP	A375_MHC_IP_R1	1	557.7662353515625	2	557.366393	1112.71823	-0.50318	-0.00028046	-0.11182	-6.2324E-05	-0.615	-0.00034278	557.3663231186983	61.819	0.40942	61.819	61.636	62.046	0					17	7	3	0	0	0	0.77948	1	22319	22319		14.838	0	1	1747100			42293	5550	31071	31320	41207	41207					0.16638287010164277
RAKLPLRIF	9	Unmodified	_RAKLPLRIF_					0	0	0		nc|ENSG00000145284|Q86SK9-2|SCD5;ENSG00000145284|ENST00000319540|SCD5	nc|ENSG00000145284|Q86SK9-2|SCD5	nc|ENSG00000145284|Q86SK9-2|SCD5	MULTI-SECPEP	A375_MHC_IP_R2	2	372.3133239746094	3	371.913354	1112.71823	0.15685	5.8335E-05	-0.25452	-9.4658E-05	-0.097665	-3.6323E-05	371.9132334927189	60.595	1.3158	61.34	61.006	62.322	0.74503					55	25	4	0	0	0	0.54812	1	22911	22911		31.268	10.854	1	67462000			42294	5550	31071	31320	41208	41208					0.16638287010164277
RAKLQPIAL	9	Unmodified	_RAKLQPIAL_					0	0	0		ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	MULTI-MSMS	A375_MHC_IP_R2	2	505.7339782714844	2	505.329476	1008.6444	-0.51642	-0.00026096	-0.012426	-6.2793E-06	-0.52885	-0.00026724	505.3294669873052	147.72	0.22122	147.74	147.64	147.86	0.019241					27	16	3	0	0	0	0.77827	2	57399	57399;57410		0	0	1	154880			42295	7611	31072	31321	41209;41210	41209					0.1404231884781666
RAKPEYISKTY	11	Unmodified	_RAKPEYISKTY_					0	0	0		ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	MULTI-MSMS	A375_MHC_IP_R1	1	452.9819030761719	3	452.58211	1354.7245	-0.18224	-8.2477E-05	-0.18506	-8.3754E-05	-0.3673	-0.00016623	452.5820731088739	20.054	0.40506	20.054	19.827	20.232	0					11	7	2	0	0	0	0.57984	1	5119	5119		20.411	11.659	1	2163400			42296	4596	31073	31322	41211	41211					0.06132715660373833
RAKRQKEVRES	11	Unmodified	_RAKRQKEVRES_					0	0	0		nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;ENSG00000196876|ENST00000627620|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	MSMS	A375_MHC_IP_R2	2	693.90185546875	2	693.899848	1385.78514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.288	1	82.032	81.532	82.532	0.74474								0	0	0	0.16302	1	30867	30867		2.9952	0	1				42297	14841	31074	31323	41212	41212					0.1076824576330182
RAKVPIVKF	9	Unmodified	_RAKVPIVKF_					0	0	0		nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	MULTI-MSMS	A375_MHC_IP_R2	2	353.63421630859375	3	353.234205	1056.68079	-0.89158	-0.00031494	0.41759	0.00014751	-0.474	-0.00016743	353.23438774460203	36.971	0.3539	37.742	37.513	37.867	0.7709					10	6	2	0	0	0	0.72761	1	13544	13544		4.5289	2.8762	1	2066900			42298	6826	31075	31324	41213	41213					0.15471195744544275
RALALRPRF	9	Unmodified	_RALALRPRF_					0	0	0		ENSG00000172340|ENST00000307227|SUCLG2;nc|ENSG00000172340|Q96I99-2|SUCLG2	ENSG00000172340|ENST00000307227|SUCLG2	ENSG00000172340|ENST00000307227|SUCLG2	MULTI-MSMS	A375_MHC_IP_R2	2	367.63311767578125	3	367.233087	1098.67743	-0.19447	-7.1416E-05	0.23714	8.7087E-05	0.042673	1.5671E-05	367.23313227429804	38.298	0.4072	39.073	38.843	39.25	0.77451					11	7	2	0	0	0	0.70411	1	14075	14075		6.6304	6.6304	1	2698900			42299	7701	31076	31325	41214	41214					0.1320394569054315
RALAPRSE	8	Unmodified	_RALAPRSE_					0	0	0			REV__ENST00000577703.1_1_18:9103009-9103312:+|nuORF	REV__ENST00000577703.1_1_18:9103009-9103312:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	450.6560363769531	2	450.256508	898.498464	0.061712	2.7786E-05	-0.14117	-6.3561E-05	-0.079454	-3.5775E-05	450.25637859553416	111.68	2.2427	111.68	110.8	113.04	0					91	43	3	0	0	0	0.7773	1	40873	40873		4.756	0	1	10089000	+		42300	26322	31077	31326	41215	41215					0.045154363318033575
RALAPRSE	8	Unmodified	_RALAPRSE_					0	0	0			REV__ENST00000577703.1_1_18:9103009-9103312:+|nuORF	REV__ENST00000577703.1_1_18:9103009-9103312:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	450.65679931640625	2	450.256508	898.498464	-0.11274	-5.0762E-05	0.034372	1.5476E-05	-0.078367	-3.5285E-05	450.25644073000825	111.15	2.2466	111.89	111.09	113.34	0.73691					92	43	3	0	0	0	0.972	1	41659	41659		2.0598	0	1	12013000	+		42301	26322	31077	31326	41216	41216					0.045154363318033575
RALDIERKL	9	Unmodified	_RALDIERKL_					0	0	0		nc|ENSG00000040275|Q96EA4-2|SPDL1;nc|ENSG00000040275|Q96EA4-3|SPDL1;ENST00000507232.5_1_5:169018105-169028825:+|nuORF;ENSG00000040275|ENST00000265295|SPDL1	nc|ENSG00000040275|Q96EA4-2|SPDL1	nc|ENSG00000040275|Q96EA4-2|SPDL1	MULTI-SECPEP	A375_MHC_IP_R1	1	372.2959289550781	3	371.89614	1112.66659	0.17605	6.5472E-05	-0.23779	-8.8434E-05	-0.061742	-2.2962E-05	371.8960750651275	31.036	0.55706	31.036	30.806	31.363	0					24	10	3	0	0	0	0.39266	1	9928	9928		39.923	0	1	2894400			42302	1164	31078	31327	41217	41217					0.114764985255988
RALDIERKL	9	Unmodified	_RALDIERKL_					0	0	0		nc|ENSG00000040275|Q96EA4-2|SPDL1;nc|ENSG00000040275|Q96EA4-3|SPDL1;ENST00000507232.5_1_5:169018105-169028825:+|nuORF;ENSG00000040275|ENST00000265295|SPDL1	nc|ENSG00000040275|Q96EA4-2|SPDL1	nc|ENSG00000040275|Q96EA4-2|SPDL1	MULTI-SECPEP	A375_MHC_IP_R2	2	372.29608154296875	3	371.89614	1112.66659	0.30961	0.00011514	-0.19563	-7.2756E-05	0.11398	4.2388E-05	371.8959930502954	30.218	0.55706	30.937	30.608	31.165	0.71857					20	10	3	0	0	0	0.49701	1	10617	10617		31.636	0	1	4056700			42303	1164	31078	31327	41218	41218					0.114764985255988
RALDKRHLL	9	Unmodified	_RALDKRHLL_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000590244.1_1_17:58543761-58603427:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	A375_MHC_IP_R2	2	374.968017578125	3	374.568247	1120.68291	0.0022155	8.2984E-07	0.026146	9.7933E-06	0.028361	1.0623E-05	374.5682479451514	20.746	1.2184	21.356	20.752	21.97	0.61029					51	23	3	0	0	0	0.54799	1	6408	6408		17.049	6.898	1	2860500			42304	1334	31079	31328	41219	41219					0.12739624482355794
RALDPSLQAQW	11	Unmodified	_RALDPSLQAQW_					0	0	0		ENST00000432807.1_3_9:136891234-136891624:+|nuORF	ENST00000432807.1_3_9:136891234-136891624:+|nuORF	ENST00000432807.1_3_9:136891234-136891624:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	643.2382202148438	2	642.838394	1283.66223	-1.0299	-0.00066205	0.17516	0.0001126	-0.85472	-0.00054945	642.8384282839357	71.683	0.40527	72.417	72.213	72.618	0.73421					12	7	2	0	0	0	0.81748	1	27219	27219		32.898	19.855	1	1897300			42305	11884	31080	31329	41220	41220					0.031749893120149864
RALDPSLQAQW	11	Unmodified	_RALDPSLQAQW_					0	0	0		ENST00000432807.1_3_9:136891234-136891624:+|nuORF	ENST00000432807.1_3_9:136891234-136891624:+|nuORF	ENST00000432807.1_3_9:136891234-136891624:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	642.838394	1283.66223	-0.37083	-0.00023838	-0.38129	-0.00024511	-0.75212	-0.00048349	642.8381762961108	72.381	0.35447	72.381	72.22	72.575	0	-0.018358	-0.00037575	NaN	32.898	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1368700			42306	11884	31080	31329							0.031749893120149864
RALEAEKRALW	11	Unmodified	_RALEAEKRALW_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB;ENST00000525051.5_1_8:144873596-144874681:-|nuORF	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-SECPEP	A375_MHC_IP_R1	1	448.1374206542969	3	448.257849	1341.75172	-0.29431	-0.00013193	-0.31584	-0.00014158	-0.61015	-0.0002735	448.25765125982804	36.414	0.4078	36.414	36.184	36.592	0					18	7	3	0	0	0	0.96366	1	12166	12166		23.722	18.32	1	4933500			42307	8324	31081	31330	41221	41221					0.09451243991429692
RALEAEKRALW	11	Unmodified	_RALEAEKRALW_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB;ENST00000525051.5_1_8:144873596-144874681:-|nuORF	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-MSMS	A375_MHC_IP_R2	2	448.6575012207031	3	448.257849	1341.75172	-0.56556	-0.00025352	0.22019	9.8702E-05	-0.34537	-0.00015481	448.2577979421015	35.422	0.45465	36.186	35.878	36.333	0.76338					17	8	3	0	0	0	0.16439	1	12841	12841		43.713	29.495	1	4981400			42308	8324	31081	31330	41222	41222					0.09451243991429692
RALELAVKY	9	Unmodified	_RALELAVKY_					0	0	0		nc|ENSG00000068885|Q9P2H3-3|IFT80;nc|ENSG00000068885|Q9P2H3-2|IFT80;ENSG00000068885|ENST00000326448|IFT80	nc|ENSG00000068885|Q9P2H3-3|IFT80	nc|ENSG00000068885|Q9P2H3-3|IFT80	MULTI-MSMS	A375_MHC_IP_R1	1	532.2186279296875	2	531.818941	1061.62333	-0.19797	-0.00010529	-0.28664	-0.00015244	-0.48461	-0.00025773	531.818733511767	48.603	0.55647	48.603	48.325	48.882	0					27	10	3	0	0	0	0.16945	1	17137	17137		40.239	4.1122	1	10299000			42309	14476	31082	31331	41223	41223					0.09498308748334239
RALELAVKY	9	Unmodified	_RALELAVKY_					0	0	0		nc|ENSG00000068885|Q9P2H3-3|IFT80;nc|ENSG00000068885|Q9P2H3-2|IFT80;ENSG00000068885|ENST00000326448|IFT80	nc|ENSG00000068885|Q9P2H3-3|IFT80	nc|ENSG00000068885|Q9P2H3-3|IFT80	MULTI-SECPEP	A375_MHC_IP_R2	2	532.21875	2	531.818941	1061.62333	-0.54161	-0.00028804	-0.22876	-0.00012166	-0.77037	-0.0004097	531.8187528070282	47.689	0.50826	48.45	48.225	48.733	0.76128					29	9	4	0	0	0	0.43207	1	17879	17879		40.239	11.158	1	9138300			42310	14476	31082	31331	41224	41224					0.09498308748334239
RALELTGRW	9	Unmodified	_RALELTGRW_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-MSMS	A375_MHC_IP_R1	1	368.2772521972656	3	367.876969	1100.60908	0.33417	0.00012293	0.71852	0.00026433	1.0527	0.00038726	367.8772791224513	52.13	0.50778	52.13	51.879	52.387	0					13	9	2	0	0	0	0.70902	1	18558	18558		6.1918	0	1	1663300			42311	6139	31083	31332	41225	41225					0.06279656320043614
RALFLLLL	8	Unmodified	_RALFLLLL_					0	0	0		nc|ENSG00000144152|Q53RD9-2|FBLN7;nc|ENSG00000144152|Q53RD9-4|FBLN7;ENSG00000144152|ENST00000331203|FBLN7	nc|ENSG00000144152|Q53RD9-2|FBLN7	nc|ENSG00000144152|Q53RD9-2|FBLN7	MULTI-SECPEP	A375_MHC_IP_R2	2	959.044677734375	1	958.6448	957.637523	-0.46426	-0.00044506	0.172	0.00016489	-0.29225	-0.00028017	958.6450135201609	22.227	1.5316	22.846	22.336	23.867	0.61932					40	29	2	0	0	0	0.972	1	7186	7186		0	0	1	4339500			42312	14656	31084	31333	41226	41226					0.15701005967298443
RALGIGFQW	9	Unmodified	_RALGIGFQW_					0	0	0		nc|ENSG00000169604|Q9H6X2-3|ANTXR1;ENST00000463335.1_1_2:69240622-69330161:+|nuORF;nc|ENSG00000169604|Q9H6X2-4|ANTXR1;nc|ENSG00000169604|Q9H6X2-6|ANTXR1;nc|ENSG00000169604|Q9H6X2-2|ANTXR1;nc|ENSG00000169604|Q9H6X2-5|ANTXR1;ENSG00000169604|ENST00000303714|ANTXR1	nc|ENSG00000169604|Q9H6X2-3|ANTXR1	nc|ENSG00000169604|Q9H6X2-3|ANTXR1	MULTI-MSMS	A375_MHC_IP_R1	1	524.690185546875	2	524.290351	1046.56615	-0.49941	-0.00026184	-0.1211	-6.349E-05	-0.62051	-0.00032532	524.2902681728955	99.442	0.75758	99.442	99.117	99.875	0					36	14	3	0	0	0	0.10411	1	36485	36485		49.933	25.259	1	28826000			42313	12212	31085	31334	41227	41227					0.04472886262601605
RALGIGFQW	9	Unmodified	_RALGIGFQW_					0	0	0		nc|ENSG00000169604|Q9H6X2-3|ANTXR1;ENST00000463335.1_1_2:69240622-69330161:+|nuORF;nc|ENSG00000169604|Q9H6X2-4|ANTXR1;nc|ENSG00000169604|Q9H6X2-6|ANTXR1;nc|ENSG00000169604|Q9H6X2-2|ANTXR1;nc|ENSG00000169604|Q9H6X2-5|ANTXR1;ENSG00000169604|ENST00000303714|ANTXR1	nc|ENSG00000169604|Q9H6X2-3|ANTXR1	nc|ENSG00000169604|Q9H6X2-3|ANTXR1	MULTI-MSMS	A375_MHC_IP_R2	2	524.6903076171875	2	524.290351	1046.56615	-0.46426	-0.00024341	0.14722	7.7185E-05	-0.31704	-0.00016622	524.2904015628006	98.567	1.0686	99.326	98.945	100.01	0.75977					32	20	2	0	0	0	0.22528	1	37321	37321		36.127	14.38	1	22446000			42314	12212	31085	31334	41228	41228					0.04472886262601605
RALGIPEL	8	Unmodified	_RALGIPEL_					0	0	0		ENSG00000140396|ENST00000452400|NCOA2;ENST00000518287.6_1_8:71025838-71050550:-|nuORF;nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENSG00000124151|ENST00000371998|NCOA3;nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	ENSG00000140396|ENST00000452400|NCOA2;nc|ENSG00000124151|Q9Y6Q9-2|NCOA3	nc|ENSG00000124151|Q9Y6Q9-2|NCOA3	MULTI-SECPEP	A375_MHC_IP_R1	1	435.1661071777344	2	434.766178	867.517802	-0.25137	-0.00010929	0.054384	2.3644E-05	-0.19698	-8.5641E-05	434.766163572723	76.973	0.96471	76.973	76.522	77.486	0					39	18	3	0	0	0	0.30564	1	28012	28012		64.236	0	1	8497100			42315	3873;5151	31086	31335	41229	41229					0.07874392622716186
RALGKNPRSW	10	Unmodified	_RALGKNPRSW_					0	0	0		nc|ENSG00000012061|P07992-3|ERCC1	nc|ENSG00000012061|P07992-3|ERCC1	nc|ENSG00000012061|P07992-3|ERCC1	MULTI-MSMS	A375_MHC_IP_R1	1	395.9598388671875	3	395.559751	1183.65742	-0.0096075	-3.8004E-06	0.11882	4.7E-05	0.10921	4.32E-05	395.5597748110383	20.115	0.45653	20.115	19.877	20.334	0					22	8	4	0	0	0	0.36253	2	5151	5059;5151		36.395	26.851	1	3742000			42316	14454	31087	31336	41230;41231	41231					0.07294149959943752
RALGKNPRSW	10	Unmodified	_RALGKNPRSW_					0	0	0		nc|ENSG00000012061|P07992-3|ERCC1	nc|ENSG00000012061|P07992-3|ERCC1	nc|ENSG00000012061|P07992-3|ERCC1	MULTI-MSMS	A375_MHC_IP_R2	2	395.95941162109375	3	395.559751	1183.65742	-0.40354	-0.00015963	-0.30402	-0.00012026	-0.70756	-0.00027988	395.55962124423866	18.985	0.29975	19.588	19.483	19.783	0.60308					15	5	4	0	0	0	0.36253	2	5811	5795;5811		36.395	25.596	1	6689900			42317	14454	31087	31336	41232;41233	41233					0.07294149959943752
RALGYPRHI	9	Unmodified	_RALGYPRHI_					0	0	0		ENSG00000103351|ENST00000576634|CLUAP1	ENSG00000103351|ENST00000576634|CLUAP1	ENSG00000103351|ENST00000576634|CLUAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	361.2569580078125	3	361.545442	1081.6145	-0.47646	-0.00017226	-0.063737	-2.3044E-05	-0.5402	-0.00019531	361.54541485780516	23.539	0.30354	24.17	24.029	24.333	0.63014					8	5	2	0	0	0	0.46045	1	7557	7557		21.59	9.3495	1	2833500			42318	2446	31088	31337	41234	41234					0.07695379902520472
RALHGVCL	8	Unmodified	_RALHGVCL_					0	0	0			REV__ENSG00000167210|ENST00000642948|LOXHD1	REV__ENSG00000167210|ENST00000642948|LOXHD1	MSMS	A375_MHC_IP_R2	2	434.6434020996094	2	434.744722	867.474891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.96	1	115.65	115.15	116.15	0.68999								0	0	0	0.16876	1	43335	43335		6.3541	3.4649	1		+		42319	20742	31089	31338	41235	41235					0.035852992936384
RALHLRQIF	9	Unmodified	_RALHLRQIF_					0	0	0		ENST00000398712.6_1_8:145154840-145157977:-|nuORF	ENST00000398712.6_1_8:145154840-145157977:-|nuORF	ENST00000398712.6_1_8:145154840-145157977:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	385.6366271972656	3	385.236608	1152.688	0.058679	2.2605E-05	0.23258	8.9599E-05	0.29126	0.0001122	385.2366753195104	47.251	0.35688	48.012	47.817	48.174	0.76128					16	6	3	0	0	0	0.3489	1	17754	17754		27.223	13.608	1	4863500			42320	11526	31090	31339	41236	41236					0.11775928344968634
RALINKHTF	9	Unmodified	_RALINKHTF_					0	0	0		ENSG00000143970|ENST00000435504|ASXL2;nc|ENSG00000143970|Q76L83-2|ASXL2	ENSG00000143970|ENST00000435504|ASXL2	ENSG00000143970|ENST00000435504|ASXL2	MULTI-SECPEP	A375_MHC_IP_R1	1	367.6171875	3	367.217214	1098.62981	0.11348	4.1671E-05	-0.013731	-5.0424E-06	0.099748	3.6629E-05	367.2172129162555	24.473	0.40171	24.473	24.296	24.698	0					14	7	3	0	0	0	0.10362	1	6969	6969		59.052	54.863	1	10741000			42321	5452	31091	31340	41237	41237					0.08444246699696123
RALINKHTF	9	Unmodified	_RALINKHTF_					0	0	0		ENSG00000143970|ENST00000435504|ASXL2;nc|ENSG00000143970|Q76L83-2|ASXL2	ENSG00000143970|ENST00000435504|ASXL2	ENSG00000143970|ENST00000435504|ASXL2	MULTI-SECPEP	A375_MHC_IP_R2	2	367.61712646484375	3	367.217214	1098.62981	-0.11846	-4.35E-05	0.080433	2.9536E-05	-0.038026	-1.3964E-05	367.2171148539537	23.709	0.25419	24.339	24.18	24.435	0.63014					11	4	3	0	0	0	0.24324	1	7690	7690		49.527	43.744	1	4939300			42322	5452	31091	31340	41238	41238					0.08444246699696123
RALKEIRKF	9	Unmodified	_RALKEIRKF_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-MSMS	A375_MHC_IP_R1	1	387.98040771484375	3	387.580264	1159.71896	0.38753	0.0001502	-0.21986	-8.5213E-05	0.16767	6.4986E-05	387.58018075349185	20.887	0.66272	20.887	20.536	21.199	0					29	12	3	0	0	0	0.0844	1	5381	5381		53.47	34.108	1	3612500			42323	1508	31092	31341	41239	41239					0.14549081659220064
RALKEIRKF	9	Unmodified	_RALKEIRKF_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-MSMS	A375_MHC_IP_R2	2	388.2765808105469	3	387.580264	1159.71896	-0.42077	-0.00016308	0.17275	6.6953E-05	-0.24802	-9.6129E-05	387.5803912900419	19.147	0.70667	19.751	19.483	20.19	0.60308					25	13	3	0	0	0	0.56584	2	5844	5844;5857		16.566	7.0219	1	4240000			42324	1508	31092	31341	41240;41241	41240					0.14549081659220064
RALKEITTF	9	Unmodified	_RALKEITTF_					0	0	0		ENSG00000106344|ENST00000223073|RBM28;RBM28|p.A107Pfs*10|1|0.32|ENSG00000106344|chr7:128339281-128339281|T/-|frameshift_variant	ENSG00000106344|ENST00000223073|RBM28	ENSG00000106344|ENST00000223073|RBM28	MULTI-SECPEP	A375_MHC_IP_R1	1	540.174072265625	2	539.816399	1077.61824	-0.52697	-0.00028447	-0.15109	-8.1563E-05	-0.67806	-0.00036603	539.8162668627313	43.424	0.66177	43.424	43.146	43.808	0					42	12	4	0	0	0	0.25548	1	15117	15117		53.404	13.454	1	54606000			42325	2684	31093	31342	41242	41242					0.08254004885679933
RALKEITTF	9	Unmodified	_RALKEITTF_					0	0	0		ENSG00000106344|ENST00000223073|RBM28;RBM28|p.A107Pfs*10|1|0.32|ENSG00000106344|chr7:128339281-128339281|T/-|frameshift_variant	ENSG00000106344|ENST00000223073|RBM28	ENSG00000106344|ENST00000223073|RBM28	MULTI-MSMS	A375_MHC_IP_R2	2	540.2158813476562	2	539.816399	1077.61824	-0.78585	-0.00042422	-0.092092	-4.9713E-05	-0.87795	-0.00047393	539.816296772333	42.425	0.91528	43.197	42.91	43.826	0.7724					45	17	5	0	0	0	0.06355	1	15749	15749		71.708	0	1	45448000			42326	2684	31093	31342	41243	41243					0.08254004885679933
RALKEITTF	9	Unmodified	_RALKEITTF_					0	0	0		ENSG00000106344|ENST00000223073|RBM28;RBM28|p.A107Pfs*10|1|0.32|ENSG00000106344|chr7:128339281-128339281|T/-|frameshift_variant	ENSG00000106344|ENST00000223073|RBM28	ENSG00000106344|ENST00000223073|RBM28	MULTI-MSMS	A375_MHC_IP_R2	2	360.6133117675781	3	360.213358	1077.61824	-0.13461	-4.8488E-05	-0.4387	-0.00015802	-0.57331	-0.00020651	360.2131737872549	42.47	0.71171	43.242	42.962	43.674	0.7724					26	13	3	0	0	0	0.074562	1	15782	15782		55.235	23.197	1	8928900			42327	2684	31093	31342	41244	41244					0.08254004885679933
RALKGRDG	8	Unmodified	_RALKGRDG_					0	0	0			REV__ENST00000525232.5_1_8:146016635-146016902:-|nuORF	REV__ENST00000525232.5_1_8:146016635-146016902:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	437.156982421875	2	436.756675	871.498798	-0.118	-5.1538E-05	0.055795	2.4369E-05	-0.062205	-2.7169E-05	436.7565970658229	104.09	1.5771	104.09	103.12	104.69	0					68	30	3	0	0	0	0.77797	1	38193	38193		2.3027	0	1	6074700	+		42328	20196	31094	31343	41245	41245					0.0579085605166938
RALKLLTTL	9	Unmodified	_RALKLLTTL_					0	0	0		nc|ENSG00000117385|Q32P28-4|P3H1;ENSG00000117385|ENST00000296388|P3H1;nc|ENSG00000117385|Q32P28-3|P3H1;ENST00000492956.1_1_1:43227954-43232675:-|nuORF;nc|ENSG00000117385|Q32P28-2|P3H1;ENST00000495874.5_1_1:43222117-43232675:-|nuORF;ENST00000460031.5_1_1:43220834-43232642:-|nuORF	nc|ENSG00000117385|Q32P28-4|P3H1	nc|ENSG00000117385|Q32P28-4|P3H1	MULTI-SECPEP	A375_MHC_IP_R1	1	515.2448120117188	2	514.844959	1027.67537	-0.77467	-0.00039884	0.42707	0.00021987	-0.3476	-0.00017896	514.8451368718926	66.912	0.56238	66.912	66.58	67.143	0					23	10	3	0	0	0	0.11711	1	24207	24207		60.074	14.374	1	7259100			42329	3477	31095	31344	41246	41246					0.16263472162086146
RALLEKNRSY	10	Unmodified	_RALLEKNRSY_					0	0	0		ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	MULTI-MSMS	A375_MHC_IP_R1	1	417.63818359375	3	417.238566	1248.69387	0.11685	4.8755E-05	-0.4298	-0.00017933	-0.31294	-0.00013057	417.23828690297705	19.604	0.61049	19.604	19.318	19.928	0					25	11	3	0	0	0	0.0049421	2	4914	4845;4914		93.928	79.71	1	9937900			42330	9456	31096	31345	41247;41248	41248					0.07946982066005148
RALLHASA	8	Unmodified	_RALLHASA_					0	0	0			REV__ENST00000397555.3_1_19:13988417-13991381:+|nuORF	REV__ENST00000397555.3_1_19:13988417-13991381:+|nuORF	MSMS	A375_MHC_IP_R2	2	419.71533203125	2	419.748319	837.482085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.879	1	55.63	55.13	56.13	0.75075								0	0	0	0.16876	1	20720	20720		2.5775	0	1		+		42331	24359	31097	31346	41249	41249					0.05684355165692523
RALLLGAL	8	Unmodified	_RALLLGAL_					0	0	0		ENST00000525095.2_1_11:134094621-134094950:+|nuORF;ENST00000281187.9_1_11:134094584-134094950:+|nuORF	ENST00000525095.2_1_11:134094621-134094950:+|nuORF	ENST00000525095.2_1_11:134094621-134094950:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	414.1788330078125	2	413.779088	825.543623	0.09363	3.8742E-05	-0.21419	-8.8627E-05	-0.12056	-4.9884E-05	413.77897451494414	86.3	2.029	86.3	85.971	88	0					83	39	5	0	0	0	0.09585	1	31581	31581		98.807	0	1	155760000			42332	10426	31098	31347	41250	41250					0.12387286864998259
RALLLGAL	8	Unmodified	_RALLLGAL_					0	0	0		ENST00000525095.2_1_11:134094621-134094950:+|nuORF;ENST00000281187.9_1_11:134094584-134094950:+|nuORF	ENST00000525095.2_1_11:134094621-134094950:+|nuORF	ENST00000525095.2_1_11:134094621-134094950:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	414.178955078125	2	413.779088	825.543623	0.1558	6.4465E-05	-0.1248	-5.1641E-05	0.030993	1.2824E-05	413.779002437899	85.171	1.786	85.907	85.523	87.309	0.73602					90	34	5	0	0	0	0.15515	1	32302	32302		98.807	0	1	145260000			42333	10426	31098	31347	41251	41251					0.12387286864998259
RALLQKPKI	9	Unmodified	_RALLQKPKI_					0	0	0		nc|ENSG00000004846|Q2M3G0-1|ABCB5;ENSG00000004846|ENST00000404938|ABCB5	nc|ENSG00000004846|Q2M3G0-1|ABCB5	nc|ENSG00000004846|Q2M3G0-1|ABCB5	MULTI-MSMS	A375_MHC_IP_R2	2	356.2691345214844	3	356.241359	1065.70225	-0.94639	-0.00033714	0.58552	0.00020859	-0.36088	-0.00012856	356.24055864298947	28.887	1.7596	29.585	29.234	30.993	0.69872					67	34	3	0	0	0	0.68705	1	9931	9931		8.1555	2.3721	1	13883000			42334	873	31099	31348	41252	41252					0.17202580773277987
RALNRLRPQ	9	Unmodified	_RALNRLRPQ_					0	0	0		ENST00000553142.5_1_12:58021477-58021885:-|nuORF	ENST00000553142.5_1_12:58021477-58021885:-|nuORF	ENST00000553142.5_1_12:58021477-58021885:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	562.6792602539062	2	562.343981	1122.67341	-0.039242	-2.2068E-05	-1.5669	-0.00088113	-1.6061	-0.0009032	562.3431754490379	127.22	0.60847	127.22	126.96	127.57	0					18	11	2	0	0	0	0.81254	1	48585	48585		0.52476	0.52476	1	10596000			42335	13398	31100	31349	41253	41253					0.11697856196815337
RALPALRGF	9	Unmodified	_RALPALRGF_					0	0	0		ENST00000414282.5_1_9:139620811-139622504:-|nuORF;ENST00000447221.1_1_9:139621449-139622504:-|nuORF	ENST00000414282.5_1_9:139620811-139622504:-|nuORF	ENST00000414282.5_1_9:139620811-139622504:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	501.2058410644531	2	500.806168	999.597784	-1.1442	-0.000573	0.4094	0.00020503	-0.73476	-0.00036797	500.80638503023596	53.476	0.45979	54.227	53.995	54.454	0.75105					19	8	3	0	0	0	0.2487	1	20154	20154		34.402	18.555	1	4929400			42336	11664	31101	31350	41254	41254					0.09796879016562343
RALPALRGF	9	Unmodified	_RALPALRGF_					0	0	0		ENST00000414282.5_1_9:139620811-139622504:-|nuORF;ENST00000447221.1_1_9:139621449-139622504:-|nuORF	ENST00000414282.5_1_9:139620811-139622504:-|nuORF	ENST00000414282.5_1_9:139620811-139622504:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	500.806168	999.597784	-0.26358	-0.000132	0.1091	5.4636E-05	-0.15448	-7.7365E-05	500.806253062246	54.459	0.50685	54.459	54.163	54.67	0	0.11612	-0.0001287	NaN	34.402	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4288900			42337	11664	31101	31350							0.09796879016562343
RALPGKEAF	9	Unmodified	_RALPGKEAF_					0	0	0		nc|ENSG00000135111|O15119-3|TBX3;ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3	nc|ENSG00000135111|O15119-3|TBX3	nc|ENSG00000135111|O15119-3|TBX3	MULTI-MSMS	A375_MHC_IP_R1	1	495.18218994140625	2	494.782359	987.550165	-0.54658	-0.00027044	0.16033	7.9329E-05	-0.38625	-0.00019111	494.78240076531284	27.817	0.60525	27.817	27.482	28.088	0					36	11	4	0	0	0	0.020087	1	8434	8434		83.429	48.497	1	72589000			42338	4647	31102	31351	41255	41255					0.05589180025708629
RALPLLRVL	9	Unmodified	_RALPLLRVL_					0	0	0		nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	MULTI-MSMS	A375_MHC_IP_R1	1	351.260986328125	3	350.909721	1049.70733	-0.51927	-0.00018222	1.4286	0.00050129	0.90929	0.00031908	351.24473990715165	29.653	1.3504	29.653	29.353	30.703	0					60	26	3	0	0	0	0.6898	1	9299	9299		4.897	0.36815	1	15534000			42339	4374	31103	31352	41256	41256					0.18446884635886818
RALPLLRVL	9	Unmodified	_RALPLLRVL_					0	0	0		nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	MULTI-MSMS	A375_MHC_IP_R2	2	351.594970703125	3	350.909721	1049.70733	-0.95977	-0.00033679	1.6446	0.00057709	0.68479	0.0002403	350.9097584067662	28.773	1.2531	29.472	29.132	30.385	0.69872					58	24	3	0	0	0	0.64808	4	10051	9939;9966;9987;10051		7.609	2.7119	1	19662000			42340	4374	31103	31352	41257;41258;41259;41260	41260					0.18446884635886818
RALPSLRLQ	9	Unmodified	_RALPSLRLQ_					0	0	0		ENST00000436881.2_1_9:139742177-139742615:+|nuORF	ENST00000436881.2_1_9:139742177-139742615:+|nuORF	ENST00000436881.2_1_9:139742177-139742615:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	351.9414978027344	3	351.889097	1052.64546	-0.16369	-5.7599E-05	0.20025	7.0465E-05	0.036562	1.2866E-05	351.8891189823913	39.453	0.86261	39.453	39.187	40.05	0					35	16	4	0	0	0	0.6343	1	13675	13675		12.873	2.722	1	14730000			42341	11932	31104	31353	41261	41261					0.12124533216751843
RALQASAL	8	Unmodified	_RALQASAL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ALDOC|p.G303R|1|0.8|ENSG00000109107|chr17:28573827-28573827|C/T|missense_variant;ENSG00000136872|ENST00000647789|ALDOB;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA	MULTI-SECPEP	A375_MHC_IP_R1	1	414.6419372558594	2	415.248152	828.481751	0.1774	7.3664E-05	-0.48501	-0.0002014	-0.30761	-0.00012774	415.24803019960905	32.19	0.61163	32.19	31.973	32.585	0					16	11	2	0	0	0	0.92636	1	10392	10392		23.148	3.7094	1	3014400			42342	5833;2856	31105	31354	41262	41262					0.06064935445840547
RALQLLRKL	9	Unmodified	_RALQLLRKL_					0	0	0		ART3|p.P152L|1|0.69|ENSG00000156219|chr4:76082209-76082209|C/T|missense_variant	ART3|p.P152L|1|0.69|ENSG00000156219|chr4:76082209-76082209|C/T|missense_variant	ART3|p.P152L|1|0.69|ENSG00000156219|chr4:76082209-76082209|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	370.6048889160156	3	370.920509	1109.7397	0.013054	4.8418E-06	0.39438	0.00014629	0.40744	0.00015113	370.92064650325204	23.508	0.20368	23.508	23.381	23.584	0					5	3	2	0	0	0	0.81688	1	6502	6502		0.23584	0	1	1174500			42343	184	31106	31355	41263	41263					0.18921672038891302
RALQLLVNY	9	Unmodified	_RALQLLVNY_					0	0	0		ENSG00000124120|ENST00000262605|TTPAL	ENSG00000124120|ENST00000262605|TTPAL	ENSG00000124120|ENST00000262605|TTPAL	MULTI-SECPEP	A375_MHC_IP_R1	1	545.72412109375	2	545.324391	1088.63423	-0.62199	-0.00033919	-0.10313	-5.6238E-05	-0.72512	-0.00039542	545.3245321135655	83.714	0.50593	83.714	83.432	83.937	0					20	9	4	0	0	0	0.46045	1	30628	30628		36.127	24.487	1	2589800			42344	3869	31107	31356	41264	41264					0.09345711122614375
RALRDAPSKQW	11	Unmodified	_RALRDAPSKQW_					0	0	0		ENST00000234739.7_1_1:147078641-147083592:+|nuORF	ENST00000234739.7_1_1:147078641-147083592:+|nuORF	ENST00000234739.7_1_1:147078641-147083592:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	443.6454772949219	3	443.245832	1326.71567	-0.68947	-0.0003056	0.35912	0.00015918	-0.33035	-0.00014643	443.245842012093	20.547	0.71247	21.157	20.803	21.516	0.6103					27	13	3	0	0	0	0.50535	1	6391	6391		20.411	12.124	1	2312200			42345	10157	31108	31357	41265	41265					0.06537786814556057
RALRHLESW	9	Unmodified	_RALRHLESW_					0	0	0		ENSG00000147684|ENST00000276689|NDUFB9	ENSG00000147684|ENST00000276689|NDUFB9	ENSG00000147684|ENST00000276689|NDUFB9	MULTI-SECPEP	A375_MHC_IP_R1	1	390.28436279296875	3	389.884235	1166.63087	-0.13826	-5.3907E-05	0.11403	4.4458E-05	-0.024235	-9.4487E-06	389.8843366570661	30.687	0.80833	30.687	30.2	31.009	0					36	15	3	0	0	0	0.61758	1	9715	9715		27.223	12.818	1	5377800			42346	5701	31109	31358	41266	41266					0.054224610686105734
RALTVPEL	8	Unmodified	_RALTVPEL_					0	0	0		ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;TUBB6|p.T290A|1|0.28|ENSG00000176014|chr18:12325657-12325657|A/G|missense_variant;ENSG00000196230|ENST00000327892|TUBB;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6	ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;nc|ENSG00000258947|Q13509-2|TUBB3;ENST00000417736.2_1_18:12308439-12326126:+|nuORF	nc|ENSG00000258947|Q13509-2|TUBB3	MULTI-SECPEP	A375_MHC_IP_R1	1	450.1712341308594	2	449.77146	897.528367	-0.42247	-0.00019001	0.32619	0.00014671	-0.096282	-4.3305E-05	449.77158474333623	67.117	1.5768	67.117	66.632	68.209	0					65	30	3	0	0	0	0.76996	1	24414	24414		43.858	11.553	1	89687000			42347	9924;4872;9016;7993	31110	31359	41267	41267					0.07550375277128296
RALTVPEL	8	Unmodified	_RALTVPEL_					0	0	0		ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;TUBB6|p.T290A|1|0.28|ENSG00000176014|chr18:12325657-12325657|A/G|missense_variant;ENSG00000196230|ENST00000327892|TUBB;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6	ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;nc|ENSG00000258947|Q13509-2|TUBB3;ENST00000417736.2_1_18:12308439-12326126:+|nuORF	nc|ENSG00000258947|Q13509-2|TUBB3	MULTI-SECPEP	A375_MHC_IP_R2	2	450.1711730957031	2	449.77146	897.528367	-0.4807	-0.0002162	0.23771	0.00010691	-0.24299	-0.00010929	449.7715723259679	66.12	1.9339	66.858	66.324	68.258	0.73811					78	37	3	0	0	0	0.68831	1	24975	24975		41.84	14.956	1	86590000			42348	9924;4872;9016;7993	31110	31359	41268	41268					0.07550375277128296
RAMESLKV	8	Unmodified	_RAMESLKV_					0	0	0		ENST00000488095.1_1_14:73396322-73396475:-|nuORF	ENST00000488095.1_1_14:73396322-73396475:-|nuORF	ENST00000488095.1_1_14:73396322-73396475:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	935.81298828125	1	933.518613	932.511337	0.068718	6.4149E-05	-0.5961	-0.00055647	-0.52739	-0.00049232	933.5180466565095	56.604	0.76221	56.604	56.347	57.109	0					31	14	3	0	0	0	0.77643	1	20264	20264		7.9102	0	1	15827000			42349	12610	31111	31360	41269	41269					0.042381313996770587
RAMESLKV	8	Unmodified	_RAMESLKV_					0	0	0		ENST00000488095.1_1_14:73396322-73396475:-|nuORF	ENST00000488095.1_1_14:73396322-73396475:-|nuORF	ENST00000488095.1_1_14:73396322-73396475:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	933.518613	932.511337	-0.34823	-0.00032508	-0.56469	-0.00052715	-0.91292	-0.00085223	933.5181067593784	55.565	1.1716	56.315	56.084	57.256	0.75075	-0.14431	1.3337E-05	NaN	7.9102	42	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21902000			42350	12610	31111	31360							0.042381313996770587
RAMKAGAC	8	Unmodified	_RAMKAGAC_					0	0	0		ENST00000560454.1_1_15:78730777-78731116:+|nuORF	ENST00000560454.1_1_15:78730777-78731116:+|nuORF	ENST00000560454.1_1_15:78730777-78731116:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	404.60211181640625	2	404.201833	806.389113	-0.12378	-5.0033E-05	0.73052	0.00029528	0.60674	0.00024524	404.2020655058576	112.51	0.66447	112.51	112.13	112.79	0					21	12	2	0	0	0	0.77839	1	41207	41207		0.79363	0	1	6367200			42351	13496	31112	31361	41270	41270					-0.021826088835382507
RAMLAIEDW	9	Unmodified	_RAMLAIEDW_					0	0	0		ENSG00000173442|ENST00000309295|EHBP1L1;ENST00000533364.1_1_11:65359049-65359770:+|nuORF;ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1	ENSG00000173442|ENST00000309295|EHBP1L1;ENSG00000115504|ENST00000431489|EHBP1	ENSG00000115504|ENST00000431489|EHBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	553.1786499023438	2	552.778959	1103.54336	-0.55118	-0.00030468	0.071996	3.9798E-05	-0.47918	-0.00026488	552.7789912539196	93.865	0.70753	93.865	93.533	94.241	0					20	13	2	0	0	0	0.41434	1	34500	34500		39.95	9.3132	1	2263700			42352	7797;3314	31113	31362	41271	41271					-0.00426500917183148
RAMLWSPWA	9	Unmodified	_RAMLWSPWA_					0	0	0		ENST00000464458.1_1_2:95770271-95772347:-|nuORF;ENST00000475895.5_1_2:95770271-95787536:-|nuORF	ENST00000464458.1_1_2:95770271-95772347:-|nuORF	ENST00000464458.1_1_2:95770271-95772347:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	373.6012268066406	3	373.1919	1116.55387	0.16616	6.201E-05	2.0964	0.00078236	2.2626	0.00084437	373.19248701284914	28.154	0.30163	28.154	27.987	28.288	0					8	5	2	0	0	0	0.62767	1	8704	8704		11.495	5.7113	1	994200			42353	12225	31114	31363	41272	41272					0.00025526527929287113
RANELQLRW	9	Unmodified	_RANELQLRW_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R1	1	593.7279663085938	2	593.327996	1184.64144	-0.2374	-0.00014086	0.022042	1.3078E-05	-0.21536	-0.00012778	593.3279618289914	56.321	0.45611	56.321	56.092	56.548	0					17	8	3	0	0	0	0.61363	1	20167	20167		19.362	10.617	1	3393300			42354	14788	31115	31364	41273	41273					0.056504437230159965
RANELQLRW	9	Unmodified	_RANELQLRW_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R2	2	593.7279052734375	2	593.327996	1184.64144	-0.65377	-0.0003879	-0.040421	-2.3983E-05	-0.6942	-0.00041189	593.3280278158594	55.441	0.4563	56.191	55.881	56.337	0.75075					12	8	2	0	0	0	0.6629	1	20943	20943		14.405	6.4952	1	3081700			42355	14788	31115	31364	41274	41274					0.056504437230159965
RANELQLRW	9	Unmodified	_RANELQLRW_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R2	2	396.1644592285156	3	395.887756	1184.64144	-0.21571	-8.5397E-05	0.50319	0.00019921	0.28748	0.00011381	395.8877465368709	55.417	0.50574	56.168	55.984	56.489	0.75075					15	9	2	0	0	0	0.2989	1	20949	20949		30.703	19.904	1	1525400			42356	14788	31115	31364	41275	41275					0.056504437230159965
RAPRRARARE	10	Unmodified	_RAPRRARARE_					0	0	0			REV__ENST00000292363.9_1_19:651790-663233:-|nuORF	REV__ENST00000292363.9_1_19:651790-663233:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	620.0994262695312	2	619.868686	1237.72282	-0.67589	-0.00041896	-0.44178	-0.00027385	-1.1177	-0.00069281	620.3695594123624	134.31	0.76009	134.31	133.91	134.67	0					19	14	2	0	0	0	0.94755	1	51811	51811		5.7319	4.0792	1	1520600	+		42357	23366	31116	31365	41276	41276					0.11346564205609866
RAPRRARARE	10	Unmodified	_RAPRRARARE_					0	0	0			REV__ENST00000292363.9_1_19:651790-663233:-|nuORF	REV__ENST00000292363.9_1_19:651790-663233:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	619.868686	1237.72282	-0.59289	-0.00036751	0.38721	0.00024002	-0.20567	-0.00012749	619.869282491791	134.45	1.2202	134.59	134.34	135.56	0.13901	0.13852	0.00047438	NaN	5.7319	35	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	920800	+		42358	23366	31116	31365							0.11346564205609866
RAPTIAQL	8	Unmodified	_RAPTIAQL_					0	0	0		ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	MULTI-MSMS	A375_MHC_IP_R2	2	435.6636962890625	2	435.263802	868.513051	-0.27154	-0.00011819	-0.099314	-4.3228E-05	-0.37086	-0.00016142	435.2637190747212	45.677	0.85799	46.442	45.997	46.855	0.76518					30	16	3	0	0	0	0.71574	1	17032	17032		29.841	0	1	5767900			42359	3877	31117	31366	41277	41277					0.07353508479945958
RAQERIDAW	9	Unmodified	_RAQERIDAW_					0	0	0		SON-ITSN1|1|fusion;SON-ITSN1|3|fusion;SON-ITSN1|2|fusion;SON-ITSN1|4|fusion;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-5|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-2|SON	SON-ITSN1|1|fusion	SON-ITSN1|1|fusion	MULTI-SECPEP	A375_MHC_IP_R1	1	382.9487609863281	3	382.200111	1143.5785	0.31222	0.00011933	0.022022	8.4169E-06	0.33424	0.00012775	382.2000722455421	31.338	0.55774	31.338	31.109	31.667	0					19	10	2	0	0	0	0.71341	1	10066	10066		8.9762	3.9287	1	3517400			42360	29217	31118	31367	41278	41278					0.012458779349799443
RAQERIDAW	9	Unmodified	_RAQERIDAW_					0	0	0		SON-ITSN1|1|fusion;SON-ITSN1|3|fusion;SON-ITSN1|2|fusion;SON-ITSN1|4|fusion;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-5|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-2|SON	SON-ITSN1|1|fusion	SON-ITSN1|1|fusion	MULTI-SECPEP	A375_MHC_IP_R2	2	382.94842529296875	3	382.200111	1143.5785	-0.10535	-4.0265E-05	-0.04019	-1.5361E-05	-0.14554	-5.5626E-05	382.20007634394454	30.678	0.60499	31.396	31.114	31.719	0.71857					25	11	3	0	0	0	0.63622	1	10761	10761		14.218	2.0434	1	3879700			42361	29217	31118	31367	41279	41279					0.012458779349799443
RAQETFMQW	9	Unmodified	_RAQETFMQW_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-SECPEP	A375_MHC_IP_R2	2	599.1798706054688	2	598.77949	1195.54443	-0.48353	-0.00028953	0.45558	0.00027279	-0.027943	-1.6732E-05	598.7796333564486	73.483	0.50954	74.218	73.99	74.499	0.73541					15	9	2	0	0	0	0.57304	1	27919	27919		29.841	5.82	1	2233900			42362	5163	31119	31368	41280	41280					-0.04552286548278062
RAQETFMQW	9	Unmodified	_RAQETFMQW_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-MATCH	A375_MHC_IP_R1	1		2	598.77949	1195.54443	-0.39319	-0.00023544	-0.10965	-6.5657E-05	-0.50285	-0.00030109	598.7794317658771	74.248	0.4567	74.248	74.045	74.502	0	0.014834	-0.00045052	NaN	29.841	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1080200			42363	5163	31119	31368							-0.04552286548278062
RAQGQVGPV	9	Unmodified	_RAQGQVGPV_					0	0	0			REV__ENSG00000163040|ENST00000409856|CCDC74A	REV__ENSG00000163040|ENST00000409856|CCDC74A	MULTI-MSMS	A375_MHC_IP_R2	2	456.6565856933594	2	456.256508	910.498464	-0.14924	-6.809E-05	-0.14546	-6.6369E-05	-0.2947	-0.00013446	456.25635809502984	118.34	1.2651	118.95	118.44	119.71	0.60909					41	24	2	0	0	0	0.6898	1	44822	44822		7.9102	1.7044	1	20017000	+		42364	19788	31120	31369	41281	41281					0.039634363317986754
RAQGQVGPV	9	Unmodified	_RAQGQVGPV_					0	0	0			REV__ENSG00000163040|ENST00000409856|CCDC74A	REV__ENSG00000163040|ENST00000409856|CCDC74A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	456.256508	910.498464	-0.14924	-6.809E-05	-0.14546	-6.6369E-05	-0.2947	-0.00013446	456.25635809502984	118.34	1.2651	118.95	118.44	119.71	0.60909	-0.18846	-0.0001582	NaN	7.9102	41	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20017000	+		42365	19788	31120	31369							0.039634363317986754
RAQHELNCSLQ	11	Unmodified	_RAQHELNCSLQ_					0	0	0		ENST00000533587.5_1_11:118402516-118403175:+|nuORF;ENST00000525298.5_1_11:118402516-118403187:+|nuORF;ENST00000529001.5_1_11:118402516-118404307:+|nuORF;nc|ENSG00000149582|Q86YD3-5|TMEM25;nc|ENSG00000149582|Q86YD3-2|TMEM25;nc|ENSG00000149582|Q86YD3-4|TMEM25;ENSG00000149582|ENST00000313236|TMEM25;ENST00000524522.5_1_11:118402605-118405292:+|nuORF	ENST00000533587.5_1_11:118402516-118403175:+|nuORF	ENST00000533587.5_1_11:118402516-118403175:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	434.2698669433594	3	433.547182	1297.61972	0.023627	1.0243E-05	1.3889	0.00060214	1.4125	0.00061238	433.8813810770477	20.992	1.1709	20.992	20.435	21.606	0					48	22	3	0	0	0	0.63737	1	5609	5609		12.228	1.7001	1	3216600			42366	5818	31121	31370	41282	41282					-0.017187290878382555
RAQRPRLQL	9	Unmodified	_RAQRPRLQL_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-MSMS	A375_MHC_IP_R1	1	380.29608154296875	3	379.903629	1136.68906	0.3734	0.00014186	-0.54043	-0.00020531	-0.16703	-6.3454E-05	379.9034874077755	25.229	0.50877	25.229	25.053	25.562	0					20	9	3	0	0	0	0.52905	1	7321	7321		18.373	3.1246	1	12482000			42367	2706	31122	31371	41283	41283					0.12618142713881753
RARASMLRL	9	Unmodified	_RARASMLRL_					0	0	0			REV__nc|ENSG00000158987|Q8TEU7-6|RAPGEF6	REV__nc|ENSG00000158987|Q8TEU7-6|RAPGEF6	MULTI-MSMS	A375_MHC_IP_R2	2	358.95013427734375	3	358.550199	1072.62877	-0.22733	-8.151E-05	0.59975	0.00021504	0.37242	0.00013353	358.55034923928673	31.556	0.4587	32.281	32.134	32.593	0.72508					12	8	2	0	0	0	0.48411	1	11182	11182		20.581	2.4346	1	5757700	+		42368	20097	31123	31372	41284	41284					0.09535709059150577
RARAVVWEL	9	Unmodified	_RARAVVWEL_					0	0	0		ENST00000215570.7_1_19:2427651-2427684:-|nuORF	ENST00000215570.7_1_19:2427651-2427684:-|nuORF	ENST00000215570.7_1_19:2427651-2427684:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	367.61700439453125	3	367.217214	1098.62981	-0.19213	-7.0553E-05	0.71466	0.00026244	0.52253	0.00019188	367.21734328061723	58.614	0.66143	59.363	59.032	59.693	0.74894					19	12	2	0	0	0	0.27715	1	22192	22192		29.841	15.935	1	2733600			42369	10085	31124	31373	41285	41285					0.08444246699696123
RARDIITAW	9	Unmodified	_RARDIITAW_					0	0	0		nc|ENSG00000184216|P51617-4|IRAK1;nc|ENSG00000184216|P51617-2|IRAK1;nc|ENSG00000184216|P51617-3|IRAK1;ENSG00000184216|ENST00000369980|IRAK1	nc|ENSG00000184216|P51617-4|IRAK1	nc|ENSG00000184216|P51617-4|IRAK1	MULTI-SECPEP	A375_MHC_IP_R1	1	368.2769775390625	3	367.876969	1100.60908	0.31201	0.00011478	0.10877	4.0013E-05	0.42077	0.00015479	367.8769968026812	55.672	0.45998	55.672	55.381	55.841	0					20	8	3	0	0	0	0.65527	1	19962	19962		16.566	7.0219	1	3949700			42370	8562	31125	31374	41286	41286					0.06279656320020877
RARDIITAW	9	Unmodified	_RARDIITAW_					0	0	0		nc|ENSG00000184216|P51617-4|IRAK1;nc|ENSG00000184216|P51617-2|IRAK1;nc|ENSG00000184216|P51617-3|IRAK1;ENSG00000184216|ENST00000369980|IRAK1	nc|ENSG00000184216|P51617-4|IRAK1	nc|ENSG00000184216|P51617-4|IRAK1	MULTI-SECPEP	A375_MHC_IP_R2	2	368.2769775390625	3	367.876969	1100.60908	0.0041114	1.5125E-06	0.13281	4.8858E-05	0.13692	5.037E-05	367.8769273229441	54.628	0.55951	55.379	55.118	55.678	0.75075					23	10	3	0	0	0	0.31606	1	20631	20631		37.075	15.484	1	3252400			42371	8562	31125	31374	41287	41287					0.06279656320020877
RAREEGIRLF	10	Unmodified	_RAREEGIRLF_					0	0	0		nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;ENSG00000142173|ENST00000300527|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	MULTI-MSMS	A375_MHC_IP_R1	1	416.6384582519531	3	416.238678	1245.6942	-0.0041734	-1.7371E-06	-0.10014	-4.1682E-05	-0.10431	-4.3419E-05	416.23864804109627	41.211	0.65786	41.211	40.863	41.521	0					32	12	5	0	0	0	0.013417	1	14196	14196		90.104	49.379	1	11196000			42372	5290	31126	31375	41288	41288					0.081184017858277
RAREEGIRLF	10	Unmodified	_RAREEGIRLF_					0	0	0		nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;ENSG00000142173|ENST00000300527|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	nc|ENSG00000142173|P12110-3|COL6A2	MULTI-MSMS	A375_MHC_IP_R2	2	416.6385498046875	3	416.238678	1245.6942	-0.083303	-3.4674E-05	-0.36812	-0.00015323	-0.45142	-0.0001879	416.23856667161647	40.228	0.55769	41.002	40.676	41.234	0.77451					28	10	4	0	0	0	0.028865	1	14874	14874		81.923	51.22	1	12127000			42373	5290	31126	31375	41289	41289					0.081184017858277
RARELLVSY	9	Unmodified	_RARELLVSY_					0	0	0		nc|ENSG00000001497|Q9Y4W2-4|LAS1L;nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-3|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	MULTI-SECPEP	A375_MHC_IP_R1	1	369.9488525390625	3	369.548741	1105.62439	0.48243	0.00017828	0.2033	7.5129E-05	0.68573	0.00025341	369.54862512561465	42.686	0.30379	42.686	42.537	42.841	0					11	5	3	0	0	0	0.54812	1	14826	14826		23.801	19.925	1	2691000			42374	845	31127	31376	41290	41290					0.07580523117235316
RARELLVSY	9	Unmodified	_RARELLVSY_					0	0	0		nc|ENSG00000001497|Q9Y4W2-4|LAS1L;nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-3|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	nc|ENSG00000001497|Q9Y4W2-4|LAS1L	MULTI-MSMS	A375_MHC_IP_R2	2	369.5830993652344	3	369.548741	1105.62439	0.26591	9.8268E-05	-0.2004	-7.4059E-05	0.065509	2.4209E-05	369.54849901103955	41.747	0.45938	42.521	42.3	42.759	0.77451					17	8	3	0	0	0	0.52197	1	15489	15489		18.721	10.776	1	3042600			42375	845	31127	31376	41291	41291					0.07580523117235316
RARERREVCVL	11	Unmodified	_RARERREVCVL_					0	0	0			REV__ENST00000588173.1_1_19:13263882-13264203:+|nuORF	REV__ENST00000588173.1_1_19:13263882-13264203:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	694.2901611328125	2	693.890969	1385.76739	-0.49634	-0.0003444	-1.0075	-0.00069909	-1.5038	-0.0010435	693.890552489481	137.82	0.25308	137.9	137.76	138.01	0.083969					10	4	3	0	0	0	0.99791	1	54086	54086		4.897	1.3005	1	2612900	+		42376	26411	31128	31377	41292	41292					0.0899320723681285
RARHRRRPRL	10	Unmodified	_RARHRRRPRL_					0	0	0		ENST00000405135.5_1_22:50969739-50970123:-|nuORF	ENST00000405135.5_1_22:50969739-50970123:-|nuORF	ENST00000405135.5_1_22:50969739-50970123:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	687.8321533203125	2	687.432319	1372.85008	-0.93031	-0.00063953	0.26326	0.00018097	-0.66705	-0.00045855	687.4324257647311	137.1	0.36023	137.1	136.97	137.33	0					10	6	2	0	0	0	0.72747	1	52816	52816		0	0	1	1446800			42377	11587	31129	31378	41293	41293					0.17857329870503236
RARKQRKRREF	11	Unmodified	_RARKQRKRREF_					0	0	0		PDZD4|p.E696K|1|0.64|ENSG00000067840|chrX:153803577-153803577|C/T|missense_variant	PDZD4|p.E696K|1|0.64|ENSG00000067840|chrX:153803577-153803577|C/T|missense_variant	PDZD4|p.E696K|1|0.64|ENSG00000067840|chrX:153803577-153803577|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	511.0335388183594	3	510.978191	1529.91274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.69	1	137.69	137.19	138.19	0								0	0	0	0.16358	1	52993	52993		0.094841	0	1				42378	15156	31130	31379	41294	41294					0.1689843114802443
RARKRHIRAWK	11	Unmodified	_RARKRHIRAWK_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MSMS	A375_MHC_IP_R2	2	739.5234375	2	739.458002	1476.90145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.76	1	146.78	146.28	147.28	0.019913								0	0	0	0.16354	1	57143	57143		0.30703	0.03801	1		+		42379	21096	31131	31380	41295	41295					0.1820765384452443
RARLEESRRLW	11	Unmodified	_RARLEESRRLW_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000173898|O15020-2|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R1	1	369.1117248535156	4	368.711471	1470.81678	0.075564	2.7861E-05	0.012833	4.7316E-06	0.088397	3.2593E-05	368.7114920814359	28.942	0.60896	28.942	28.643	29.252	0					25	11	3	0	0	0	0.99535	1	8971	8971		6.6599	5.5501	1	7800900			42380	3298;7838	31132	31381	41296	41296					0.10020238517267899
RARLEESRRLW	11	Unmodified	_RARLEESRRLW_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000173898|O15020-2|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R2	2	368.5997009277344	4	368.711471	1470.81678	0.16983	6.2617E-05	-0.25324	-9.3372E-05	-0.083411	-3.0755E-05	368.7113701117587	27.926	0.50747	28.605	28.401	28.909	0.67857					30	9	4	0	0	0	0.87233	1	9587	9587		25.155	15.911	1	11407000			42381	3298;7838	31132	31381	41297	41297					0.10020238517267899
RARLGLYIF	9	Unmodified	_RARLGLYIF_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35148995-35166226:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-SECPEP	A375_MHC_IP_R2	2	369.6120910644531	3	370.225709	1107.6553	0.50257	0.00018606	-0.027902	-1.033E-05	0.47467	0.00017573	370.22560084343917	85.942	0.25494	86.675	86.488	86.743	0.733					6	4	2	0	0	0	0.81039	1	32672	32672		1.1933	0	1	499020			42382	1066	31133	31382	41298	41298					0.1057772122210281
RARLGLYIF	9	Unmodified	_RARLGLYIF_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35148995-35166226:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MATCH	A375_MHC_IP_R1	1		3	370.225709	1107.6553	0.18253	6.7577E-05	-0.57469	-0.00021276	-0.39216	-0.00014519	370.5597458082196	86.98	0.30251	86.98	86.781	87.083	0	0.15255	-0.00020396	NaN	1.1933	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1146700			42383	1066	31133	31382							0.1057772122210281
RARPLPLAGW	10	Unmodified	_RARPLPLAGW_					0	0	0		ENST00000288985.11_1_9:98638084-98643219:+|nuORF	ENST00000288985.11_1_9:98638084-98643219:+|nuORF	ENST00000288985.11_1_9:98638084-98643219:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	379.9610900878906	3	379.561092	1135.66145	0.34022	0.00012913	0.024089	9.1434E-06	0.36431	0.00013828	379.56107662375564	64.015	0.50671	64.015	63.735	64.242	0					14	9	2	0	0	0	0.65751	1	23133	23133		16.566	7.5896	1	2653500			42384	10462	31134	31383	41299	41299					0.09904239453658192
RARPLPLAGW	10	Unmodified	_RARPLPLAGW_					0	0	0		ENST00000288985.11_1_9:98638084-98643219:+|nuORF	ENST00000288985.11_1_9:98638084-98643219:+|nuORF	ENST00000288985.11_1_9:98638084-98643219:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	379.9610290527344	3	379.561092	1135.66145	0.081793	3.1045E-05	-0.10539	-4.0002E-05	-0.023597	-8.9565E-06	379.5610533404334	62.905	0.45428	63.647	63.333	63.788	0.74263					19	8	3	0	0	0	0.60385	1	23866	23866		20.581	8.4062	1	3352100			42385	10462	31134	31383	41300	41300					0.09904239453658192
RARQEQSEL	9	Unmodified	_RARQEQSEL_					0	0	0			REV__ENSG00000142252|ENST00000270257|GEMIN7	REV__ENSG00000142252|ENST00000270257|GEMIN7	MULTI-SECPEP	A375_MHC_IP_R2	2	372.57684326171875	3	372.863388	1115.56833	0.13992	5.217E-05	0.078725	2.9354E-05	0.21864	8.1524E-05	372.8634697417108	23.485	0.60804	24.115	23.675	24.283	0.63014					15	11	2	0	0	0	0.69381	1	7460	7460		14.957	8.3268	1	4968000	+		42386	19303	31135	31384	41301	41301					0.01517270209774324
RARRFQWPL	9	Unmodified	_RARRFQWPL_					0	0	0		ENSG00000105767|ENST00000222374|CADM4	ENSG00000105767|ENST00000222374|CADM4	ENSG00000105767|ENST00000222374|CADM4	MULTI-MSMS	A375_MHC_IP_R1	1	410.9721984863281	3	410.571991	1228.69414	0.058301	2.3937E-05	0.028495	1.1699E-05	0.086796	3.5636E-05	410.57199440081916	52.217	0.50757	52.217	51.982	52.49	0					15	9	2	0	0	0	0.64971	1	18567	18567		11.495	11.495	1	1678400			42387	2636	31136	31385	41302	41302					0.08894446576505288
RARRLLFAF	9	Unmodified	_RARRLLFAF_					0	0	0		ENSG00000122254|ENST00000261374|HS3ST2	ENSG00000122254|ENST00000261374|HS3ST2	ENSG00000122254|ENST00000261374|HS3ST2	MSMS	A375_MHC_IP_R2	2	383.9374694824219	3	383.90497	1148.69308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.418	1	41.193	40.693	41.693	0.77451								0	0	0	0.15486	1	14966	14966		2.9952	0.49676	1				42388	3770	31137	31386	41303	41303					0.12468232207584151
RARRLQVRLES	11	Unmodified	_RARRLQVRLES_					0	0	0			REV__ENST00000567791.1_1_16:66955609-66957656:-|nuORF	REV__ENST00000567791.1_1_16:66955609-66957656:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	461.4351806640625	3	461.947898	1382.82186	-0.3039	-0.00014038	1.0469	0.00048363	0.74304	0.00034324	462.2827590408532	141.23	1.0301	141.27	140.75	141.78	0.04216					28	19	2	0	0	0	1.0014	1	55172	55172		0.08335	0	1	871550	+		42389	20689	31138	31387	41304	41304					0.14576542379904822
RARTIYERF	9	Unmodified	_RARTIYERF_					0	0	0		CRNKL1|p.L672*|1|0.43|ENSG00000101343|chr20:20039622-20039622|A/-|frameshift_variant;ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	CRNKL1|p.L672*|1|0.43|ENSG00000101343|chr20:20039622-20039622|A/-|frameshift_variant	CRNKL1|p.L672*|1|0.43|ENSG00000101343|chr20:20039622-20039622|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	404.95965576171875	3	404.55964	1210.65709	-0.58628	-0.00023718	0.31363	0.00012688	-0.27265	-0.0001103	404.55976942905085	27.174	0.50371	27.174	26.928	27.432	0					32	9	4	0	0	0	0.030222	1	8172	8172		74.772	37	1	43254000			42390	663	31139	31388	41305	41305					0.06018730240066361
RARTIYERF	9	Unmodified	_RARTIYERF_					0	0	0		CRNKL1|p.L672*|1|0.43|ENSG00000101343|chr20:20039622-20039622|A/-|frameshift_variant;ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	CRNKL1|p.L672*|1|0.43|ENSG00000101343|chr20:20039622-20039622|A/-|frameshift_variant	CRNKL1|p.L672*|1|0.43|ENSG00000101343|chr20:20039622-20039622|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	404.95941162109375	3	404.55964	1210.65709	-0.36874	-0.00014918	0.15342	6.2066E-05	-0.21532	-8.711E-05	404.5596756010441	26.476	0.60901	27.136	26.805	27.414	0.65992					35	11	5	0	0	0	0.025728	1	8914	8914		78.61	54.809	1	56981000			42391	663	31139	31388	41306	41306					0.06018730240066361
RARWMKMSRKY	11	Unmodified	_RARWMKMSRKY_					0	0	0		ENST00000265109.7_1_5:34829894-34830826:+|nuORF	ENST00000265109.7_1_5:34829894-34830826:+|nuORF	ENST00000265109.7_1_5:34829894-34830826:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	505.6697082519531	3	504.939469	1511.79658	-0.65203	-0.00032924	-1.8879	-0.00095327	-2.5399	-0.0012825	504.93891885836683	38.343	0.56087	38.343	38.067	38.628	0					32	10	4	0	0	0	0.73472	1	13099	13099		4.4062	3.0765	1	13568000			42392	10346	31140	31389	41307	41307					0.06115028261433508
RASEVYVAF	9	Unmodified	_RASEVYVAF_					0	0	0		ENST00000522601.5_1_8:8094652-8094763:+|nuORF	ENST00000522601.5_1_8:8094652-8094763:+|nuORF	ENST00000522601.5_1_8:8094652-8094763:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	521.6710815429688	2	521.271824	1040.5291	-0.82307	-0.00042904	0.70956	0.00036987	-0.11352	-5.9172E-05	521.2716008075334	54.516	0.6073	55.267	54.865	55.473	0.75075					33	11	4	0	0	0	0.32092	1	20556	20556		29.082	6.3453	1	5275900			42393	13027	31141	31390	41308	41308					0.010451699261693648
RASFQKRTA	9	Unmodified	_RASFQKRTA_					0	0	0		TMC2|p.E109K|1|0.3|ENSG00000149488|chr20:2558698-2558698|G/A|missense_variant	TMC2|p.E109K|1|0.3|ENSG00000149488|chr20:2558698-2558698|G/A|missense_variant	TMC2|p.E109K|1|0.3|ENSG00000149488|chr20:2558698-2558698|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	355.4598693847656	3	355.536835	1063.58868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.563	1	49.563	49.063	50.063	0								0	0	0	0.15486	1	17532	17532		2.7352	0.23671	1				42394	29352	31142	31391	41309	41309					0.05942485660239072
RASLLLKTY	9	Unmodified	_RASLLLKTY_					0	0	0		ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	MULTI-SECPEP	A375_MHC_IP_R2	2	533.22607421875	2	532.826766	1063.63898	-0.74469	-0.00039679	-0.034163	-1.8203E-05	-0.77885	-0.00041499	532.8266414063629	44.495	0.40541	45.264	45.035	45.441	0.7691					16	7	3	0	0	0	0.71071	1	16619	16619		19.362	5.4559	1	2654100			42395	8505	31143	31392	41310	41310					0.10970595265393968
RASLLVPR	8	Unmodified	_RASLLVPR_					0	0	0			REV__ENST00000296933.10_1_5:171433486-171433849:-|nuORF	REV__ENST00000296933.10_1_5:171433486-171433849:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	456.2818908691406	2	456.292894	910.571235	-0.48962	-0.00022341	0.019968	9.1111E-06	-0.46966	-0.0002143	456.2928585760463	41.145	1.2207	41.92	41.438	42.659	0.77451					60	23	4	0	0	0	0.70629	1	15258	15258		32.786	0.4802	1	73225000	+		42396	23394	31144	31393	41311	41311					0.11237190125223151
RASPATVQW	9	Unmodified	_RASPATVQW_					0	0	0		ENSG00000132005|ENST00000254325|RFX1;ENST00000589239.5_1_19:14080804-14104655:-|nuORF	ENSG00000132005|ENST00000254325|RFX1	ENSG00000132005|ENST00000254325|RFX1	MULTI-SECPEP	A375_MHC_IP_R1	1	508.6692199707031	2	508.269616	1014.52468	-0.24154	-0.00012277	-0.30451	-0.00015477	-0.54605	-0.00027754	508.2694624714939	43.3	0.45884	43.3	43.043	43.502	0					19	8	3	0	0	0	0.59098	1	15058	15058		27.629	10.687	1	3325500			42397	4368	31145	31394	41312	41312					0.017997055032651588
RASPATVQW	9	Unmodified	_RASPATVQW_					0	0	0		ENSG00000132005|ENST00000254325|RFX1;ENST00000589239.5_1_19:14080804-14104655:-|nuORF	ENSG00000132005|ENST00000254325|RFX1	ENSG00000132005|ENST00000254325|RFX1	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9802551269531	2	508.269616	1014.52468	-0.6801	-0.00034567	0.21073	0.00010711	-0.46936	-0.00023856	508.26961919171737	42.42	0.6627	43.193	42.707	43.369	0.7724					24	12	4	0	0	0	0.53748	1	15781	15781		30.637	30.637	1	2984900			42398	4368	31145	31394	41313	41313					0.017997055032651588
RASPDPRAY	9	Unmodified	_RASPDPRAY_					0	0	0		ENSG00000182095|ENST00000430969|TNRC18;nc|ENSG00000182095|O15417-2|TNRC18	ENSG00000182095|ENST00000430969|TNRC18;nc|ENSG00000182095|O15417-2|TNRC18	ENSG00000182095|ENST00000430969|TNRC18	MULTI-SECPEP	A375_MHC_IP_R1	1	517.164306640625	2	516.764697	1031.51484	-0.68455	-0.00035375	-0.085861	-4.437E-05	-0.77041	-0.00039812	516.7646912534872	19.446	0.35488	19.446	19.268	19.623	0					15	6	3	0	0	0	0.23894	1	4829	4829		33.445	15.072	1	21318000			42399	8375;14801	31146	31395	41314	41314					0.00034517497897468274
RASPLRLFL	9	Unmodified	_RASPLRLFL_					0	0	0			REV__ENST00000539294.5_1_8:64081202-64081433:+|nuORF	REV__ENST00000539294.5_1_8:64081202-64081433:+|nuORF	MSMS	A375_MHC_IP_R1	1	536.7318725585938	2	536.834926	1071.6553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.15	1	127.15	126.65	127.65	0								0	0	0	0.15486	1	48663	48663		7.9102	0.62092	1		+		42400	25940	31147	31396	41315	41315					0.12233721222105487
RASPLRLFL	9	Unmodified	_RASPLRLFL_					0	0	0			REV__ENST00000539294.5_1_8:64081202-64081433:+|nuORF	REV__ENST00000539294.5_1_8:64081202-64081433:+|nuORF	MSMS	A375_MHC_IP_R2	2	536.7319946289062	2	536.834926	1071.6553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.77	1	127.04	126.54	127.54	0.26593								0	0	0	0.15486	1	49626	49626		11.64	0.81637	1		+		42401	25940	31147	31396	41316	41316					0.12233721222105487
RATHRLLLL	9	Unmodified	_RATHRLLLL_					0	0	0		nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS	nc|ENSG00000087460|P63092-3|GNAS	nc|ENSG00000087460|P63092-3|GNAS	MULTI-MSMS	A375_MHC_IP_R1	1	365.3049011230469	3	364.904859	1091.69275	0.59499	0.00021711	-0.21162	-7.722E-05	0.38337	0.00013989	364.90478370360677	48.417	0.65798	48.417	48.173	48.831	0					30	12	3	0	0	0	0.33243	1	17056	17056		28.234	11.668	1	13700000			42402	1873	31148	31397	41317	41317					0.15056812487750904
RATHRLLLL	9	Unmodified	_RATHRLLLL_					0	0	0		nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS	nc|ENSG00000087460|P63092-3|GNAS	nc|ENSG00000087460|P63092-3|GNAS	MULTI-MSMS	A375_MHC_IP_R2	2	365.3050231933594	3	364.904859	1091.69275	0.21188	7.7317E-05	0.16971	6.1928E-05	0.38159	0.00013925	364.90490195299236	47.131	0.66212	47.893	47.563	48.225	0.76128					30	12	3	0	0	0	0.20295	1	17628	17628		37.771	37.771	1	11444000			42403	1873	31148	31397	41318	41318					0.15056812487750904
RATKVFPSF	9	Unmodified	_RATKVFPSF_					0	0	0			REV__ENSG00000139988|ENST00000551171|RDH12	REV__ENSG00000139988|ENST00000551171|RDH12	MULTI-SECPEP	A375_MHC_IP_R1	1	351.92926025390625	3	351.534431	1051.58147	-0.18279	-6.4258E-05	0.81375	0.00028606	0.63096	0.0002218	351.53462435885893	39.459	0.40544	39.459	39.238	39.643	0					17	7	3	0	0	0	0.65246	1	13412	13412		7.1017	0	1	4204300	+		42404	19189	31149	31398	41319	41319					0.05773753059816045
RAVEIGVKKF	10	Unmodified	_RAVEIGVKKF_					0	0	0		ENSG00000147687|ENST00000276692|TATDN1	ENSG00000147687|ENST00000276692|TATDN1	ENSG00000147687|ENST00000276692|TATDN1	MULTI-MSMS	A375_MHC_IP_R1	1	383.3045349121094	3	382.904636	1145.69208	0.20448	7.8298E-05	0.0035172	1.3468E-06	0.208	7.9645E-05	382.9046150606344	28.844	0.40412	28.844	28.643	29.047	0					24	7	4	0	0	0	0.022052	1	8947	8947		84.06	47.665	1	16005000			42405	5702	31150	31399	41320	41320					0.1250597304801886
RAVEIGVKKF	10	Unmodified	_RAVEIGVKKF_					0	0	0		ENSG00000147687|ENST00000276692|TATDN1	ENSG00000147687|ENST00000276692|TATDN1	ENSG00000147687|ENST00000276692|TATDN1	MULTI-MSMS	A375_MHC_IP_R2	2	383.3045654296875	3	382.904636	1145.69208	-0.22757	-8.7138E-05	0.14573	5.5801E-05	-0.081838	-3.1336E-05	382.90465789181735	28.046	0.4064	28.725	28.502	28.909	0.67857					20	7	4	0	0	0	0.095191	1	9636	9636		64.688	34.256	1	25453000			42406	5702	31150	31399	41321	41321					0.1250597304801886
RAVEPLRTF	9	Unmodified	_RAVEPLRTF_					0	0	0		ENST00000568202.5_1_16:5075546-5083878:-|nuORF;nc|ENSG00000103174|Q9UK23-2|NAGPA;ENSG00000103174|ENST00000312251|NAGPA;ENST00000591478.1_1_16:5080487-5083590:-|nuORF;nc|ENSG00000103174|Q9UK23-3|NAGPA	ENST00000568202.5_1_16:5075546-5083878:-|nuORF	ENST00000568202.5_1_16:5075546-5083878:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	545.2138671875	2	544.81419	1087.61383	-0.69196	-0.00037699	0.24861	0.00013545	-0.44335	-0.00024154	544.8143194883452	40.024	0.56025	40.024	39.744	40.304	0					30	10	4	0	0	0	0.014055	1	13690	13690		91.085	33.363	1	41371000			42407	2428	31151	31400	41322	41322					0.07352540462784418
RAVEPLRTF	9	Unmodified	_RAVEPLRTF_					0	0	0		ENST00000568202.5_1_16:5075546-5083878:-|nuORF;nc|ENSG00000103174|Q9UK23-2|NAGPA;ENSG00000103174|ENST00000312251|NAGPA;ENST00000591478.1_1_16:5080487-5083590:-|nuORF;nc|ENSG00000103174|Q9UK23-3|NAGPA	ENST00000568202.5_1_16:5075546-5083878:-|nuORF	ENST00000568202.5_1_16:5075546-5083878:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	545.2137451171875	2	544.81419	1087.61383	-0.98553	-0.00053693	0.0011073	6.033E-07	-0.98443	-0.00053633	544.8141894716338	39.114	0.61173	39.888	39.607	40.219	0.77451					35	11	4	0	0	0	0.032066	1	14377	14377		73.196	23.642	1	49173000			42408	2428	31151	31400	41323	41323					0.07352540462784418
RAVKFQRAI	9	Unmodified	_RAVKFQRAI_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	A375_MHC_IP_R1	1	363.9607849121094	3	363.561092	1087.66145	-0.098899	-3.5956E-05	-0.23455	-8.5273E-05	-0.33345	-0.00012123	363.5609701742039	23.663	0.50821	23.663	23.483	23.991	0					20	9	3	0	0	0	0.23226	1	6546	6546		35.612	10.731	1	10361000			42409	3217	31152	31401	41324	41324					0.12112239453654183
RAVKFQRAI	9	Unmodified	_RAVKFQRAI_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	A375_MHC_IP_R2	2	363.9607849121094	3	363.561092	1087.66145	-0.40488	-0.0001472	0.19191	6.9772E-05	-0.21297	-7.7427E-05	363.56121159108056	21.368	0.86332	21.987	21.422	22.285	0.61932					26	16	2	0	0	0	0.46357	1	6703	6703		21.59	0	1	2468400			42410	3217	31152	31401	41325	41325					0.12112239453654183
RAVKVLQLF	9	Unmodified	_RAVKVLQLF_					0	0	0		ENSG00000186687|ENST00000379380|LYRM7	ENSG00000186687|ENST00000379380|LYRM7	ENSG00000186687|ENST00000379380|LYRM7	MULTI-SECPEP	A375_MHC_IP_R2	2	537.16845703125	2	537.345126	1072.6757	-0.84489	-0.000454	-0.11395	-6.1231E-05	-0.95884	-0.00051523	537.3452811986455	73.761	0.41031	74.497	74.294	74.704	0.7354					12	7	2	0	0	0	0.74875	1	28011	28011		15.847	7.2539	1	1118500			42411	8772	31153	31402	41326	41326					0.14226891881935444
RAVNEFSGW	9	Unmodified	_RAVNEFSGW_					0	0	0		ENST00000345662.5_1_2:32288779-32289037:+|nuORF	ENST00000345662.5_1_2:32288779-32289037:+|nuORF	ENST00000345662.5_1_2:32288779-32289037:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	533.6596069335938	2	533.259248	1064.50394	-0.63995	-0.00034126	0.48818	0.00026033	-0.15177	-8.0932E-05	533.2593345644386	60.163	0.86608	60.163	59.803	60.669	0					46	16	4	0	0	0	0.029064	2	21627	21590;21627		75.761	31.903	1	20551000			42412	10908	31154	31403	41327;41328	41328					-0.025728848763719725
RAVNEFSGW	9	Unmodified	_RAVNEFSGW_					0	0	0		ENST00000345662.5_1_2:32288779-32289037:+|nuORF	ENST00000345662.5_1_2:32288779-32289037:+|nuORF	ENST00000345662.5_1_2:32288779-32289037:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	533.658203125	2	533.259248	1064.50394	-1.1438	-0.00060995	0.16593	8.8482E-05	-0.97789	-0.00052147	533.2591519650588	59.33	0.8614	60.077	59.742	60.603	0.74714					43	16	4	0	0	0	0.066859	2	22409	22409;22480		57.722	25.416	1	23656000			42413	10908	31154	31403	41329;41330	41329					-0.025728848763719725
RAVWDAFCAN	10	Unmodified	_RAVWDAFCAN_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11;ENST00000504526.1_1_4:184580477-184587420:+|nuORF	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	MULTI-SECPEP	A375_MHC_IP_R1	1	384.2864990234375	3	384.846681	1151.51821	0.10388	3.9978E-05	-2.7903	-0.0010738	-2.6864	-0.0010338	385.1806515359965	32.395	0.25403	32.395	32.231	32.485	0					6	4	2	0	0	0	0.93799	1	10454	10454		3.5871	0.26742	1	1901000			42414	7316	31155	31404	41331	41331					-0.05148555719756587
RAWRRRLRRQ	10	Unmodified	_RAWRRRLRRQ_					0	0	0			REV__ENST00000378616.3_1_X:37553591-37553678:+|nuORF	REV__ENST00000378616.3_1_X:37553591-37553678:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	727.8427734375	2	727.445426	1452.8763	-0.91368	-0.00066465	0.1633	0.00011879	-0.75038	-0.00054586	727.4453971334734	143.09	0.65649	143.09	142.64	143.29	0					35	12	4	0	0	0	0.72658	1	54814	54814		0.40072	0.40072	1	4947000	+		42415	24182	31156	31405	41332	41332					0.16797599041956346
RAWRRRLRRQ	10	Unmodified	_RAWRRRLRRQ_					0	0	0			REV__ENST00000378616.3_1_X:37553591-37553678:+|nuORF	REV__ENST00000378616.3_1_X:37553591-37553678:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	727.445426	1452.8763	-0.91368	-0.00066465	0.1633	0.00011879	-0.75038	-0.00054586	727.4453971334734	143.09	0.65649	143.09	142.64	143.29	0	-0.017741	0.00013312	NaN	0.40072	35	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4947000	+		42416	24182	31156	31405							0.16797599041956346
RAYCETCWDWL	11	Unmodified	_RAYCETCWDWL_					0	0	0		nc|ENSG00000115266|O95996-3|APC2;ENSG00000115266|ENST00000590469|APC2;ENST00000593146.1_3_19:1452985-1457289:+|nuORF	nc|ENSG00000115266|O95996-3|APC2	nc|ENSG00000115266|O95996-3|APC2	MSMS	A375_MHC_IP_R2	2	482.4693298339844	3	482.537407	1444.59039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.806	1	22.426	21.926	22.926	0.61932								0	0	0	0.16336	1	6892	6892		1.2148	0.10508	1				42417	3289	31157	31406	41333	41333					-0.11412009428340752
RAYGGPRYL	9	Unmodified	_RAYGGPRYL_					0	0	0		ENST00000566735.1_1_16:19125342-19127388:+|nuORF;ENSG00000205730|ENST00000381440|ITPRIPL2	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	527.1771240234375	2	526.785433	1051.55631	-0.95063	-0.00050078	0.56368	0.00029694	-0.38695	-0.00020384	526.7857672762301	29.378	0.20109	29.378	29.252	29.453	0					5	3	2	0	0	0	0.35487	1	9176	9176		36.127	8.4982	1	10509000			42418	9524	31158	31407	41334	41334					0.03259698257238597
RAYLAQRKF	9	Unmodified	_RAYLAQRKF_					0	0	0		ENST00000597026.5_1_19:19017767-19023834:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;ENSG00000105669|ENST00000262812|COPE;ENST00000598969.5_1_19:19021778-19023834:-|nuORF;nc|ENSG00000105669|O14579-2|COPE	ENST00000597026.5_1_19:19017767-19023834:-|nuORF	ENST00000597026.5_1_19:19017767-19023834:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	385.292724609375	3	384.89273	1151.65636	-0.021664	-8.3382E-06	-0.11437	-4.402E-05	-0.13603	-5.2359E-05	384.89265835559814	23.605	0.91516	23.605	23.33	24.245	0					33	17	3	0	0	0	0.02331	1	6521	6521		80.676	61.05	1	17112000			42419	2627	31159	31408	41335	41335					0.08659935591026624
RAYLAQRKF	9	Unmodified	_RAYLAQRKF_					0	0	0		ENST00000597026.5_1_19:19017767-19023834:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;ENSG00000105669|ENST00000262812|COPE;ENST00000598969.5_1_19:19021778-19023834:-|nuORF;nc|ENSG00000105669|O14579-2|COPE	ENST00000597026.5_1_19:19017767-19023834:-|nuORF	ENST00000597026.5_1_19:19017767-19023834:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	385.2928466796875	3	384.89273	1151.65636	-0.45284	-0.0001743	0.35529	0.00013675	-0.097556	-3.7549E-05	384.8928891191526	21.284	0.86116	21.903	21.169	22.03	0.61932					37	16	3	0	0	0	0.36673	1	6513	6513		38.615	30.17	1	3689500			42420	2627	31159	31408	41336	41336					0.08659935591026624
RAYLFNSV	8	Unmodified	_RAYLFNSV_					0	0	0		ENST00000477675.1_1_22:22055420-22058252:-|nuORF;ENSG00000100027|ENST00000339468|YPEL1;nc|ENSG00000090238|P61236|YPEL3;ENSG00000175155|ENST00000312655|YPEL2;ENST00000565479.5_1_16:30104033-30107516:-|nuORF;ENSG00000090238|ENST00000398841|YPEL3;ENSG00000166793|ENST00000300022|YPEL4	ENST00000477675.1_1_22:22055420-22058252:-|nuORF	ENST00000477675.1_1_22:22055420-22058252:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	485.6606140136719	2	485.261259	968.507966	-0.24635	-0.00011954	-0.51778	-0.00025126	-0.76413	-0.0003708	485.26098924661943	63.741	0.66327	63.741	63.427	64.09	0					17	12	2	0	0	0	0.70206	1	23072	23072		34.102	0	1	1592000			42421	2102	31160	31409	41337	41337					0.0224520461732709
RAYPDANLL	9	Unmodified	_RAYPDANLL_					0	0	0		ENSG00000110092|ENST00000227507|CCND1	ENSG00000110092|ENST00000227507|CCND1	ENSG00000110092|ENST00000227507|CCND1	MULTI-SECPEP	A375_MHC_IP_R1	1	517.176513671875	2	516.777274	1031.53999	-0.60806	-0.00031423	0.075108	3.8814E-05	-0.53295	-0.00027542	516.7772798402827	58.567	0.65916	58.567	58.228	58.887	0					32	12	3	0	0	0	0.20451	1	21018	21018		57.722	57.722	1	15552000			42422	2920	31161	31410	41338	41338					0.02548572300474916
RAYPDANLL	9	Unmodified	_RAYPDANLL_					0	0	0		ENSG00000110092|ENST00000227507|CCND1	ENSG00000110092|ENST00000227507|CCND1	ENSG00000110092|ENST00000227507|CCND1	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1768798828125	2	516.777274	1031.53999	-1.0482	-0.00054169	-0.097935	-5.0611E-05	-1.1462	-0.00059231	516.7772169083013	57.692	0.65915	58.441	58.12	58.779	0.74895					30	12	3	0	0	0	0.20451	1	21807	21807		57.722	7.789	1	14318000			42423	2920	31161	31410	41339	41339					0.02548572300474916
RAYSQYDKF	9	Unmodified	_RAYSQYDKF_					0	0	0		ANGPT1|p.R391K|1|0.41|ENSG00000154188|chr8:107284715-107284715|C/T|missense_variant	ANGPT1|p.R391K|1|0.41|ENSG00000154188|chr8:107284715-107284715|C/T|missense_variant	ANGPT1|p.R391K|1|0.41|ENSG00000154188|chr8:107284715-107284715|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	392.949462890625	3	393.192734	1176.55637	-0.027387	-1.0768E-05	3.6517	0.0014358	3.6243	0.001425	393.194362274682	19.655	0.84153	19.655	19.238	20.079	0					31	16	3	0	0	0	0.67483	1	4649	4649		10.151	8.4083	1	7411900			42424	127	31162	31411	41340	41340					-0.02484346533447024
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MSMS	A375_MHC_IP_R2	2	833.64111328125	1	832.239102	831.231826	-1.0242	-0.00085236	-0.71307	-0.00059344	-1.7372	-0.0014458	832.2411052865215	17.619	2.142	18.216	17.289	19.431	0.59616					464	221	3	0	0	0	0.77861	5	5004	5004;5135;5326;5372;5512		0	0	1	803940	+		42425	19655	31163	31412	41341;41342;41343;41344;41345	41341					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-SECPEP	A375_MHC_IP_R2	2	832.6397705078125	1	832.239102	831.231826	-1.0242	-0.00085236	-0.71307	-0.00059344	-1.7372	-0.0014458	832.2411052865215	17.619	2.142	18.216	17.289	19.431	0.59616					464	221	3	0	0	0	0.972	1	4990	4990		0	0	1	803940	+		42426	19655	31163	31412	41346	41346					-0.19054096081254102
RCCCCCCL	8	Unmodified	_RCCCCCCL_					0	0	0		nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	MULTI-MSMS	A375_MHC_IP_R1	1	907.658447265625	1	906.258123	905.250847	-0.34119	-0.00030921	0.27233	0.0002468	-0.068856	-6.2401E-05	906.2594364771616	3.0845	1.2273	3.0845	2.4135	3.6408	0					332	182	2	0	0	0	0.77861	4	593	593;601;717;739		0	0	1	209600			42427	14770	31164	31413	41347;41348;41349;41350	41347					-0.20556882781841068
RCCCCCCL	8	Unmodified	_RCCCCCCL_					0	0	0		nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	MULTI-MSMS	A375_MHC_IP_R1	1	907.659423828125	1	906.258123	905.250847	-0.34121	-0.00030922	0.14886	0.0001349	-0.19235	-0.00017432	906.2592123466596	7.1364	0.48593	7.1364	7.0562	7.5421	0					117	73	2	0	0	0	0.77861	2	1646	1646;1687		0	0	1	208270			42428	14770	31164	31413	41351;41352	41351					-0.20556882781841068
RCCCCCCL	8	Unmodified	_RCCCCCCL_					0	0	0		nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	MULTI-MSMS	A375_MHC_IP_R1	1	907.6598510742188	1	906.258123	905.250847	-0.34104	-0.00030907	-0.038875	-3.5231E-05	-0.37992	-0.0003443	906.2591653245747	9.0968	0.89167	9.0968	8.4066	9.2982	0					219	136	2	0	0	0	0.77861	4	1935	1935;2004;2066;2124		0	0	1	231930			42429	14770	31164	31413	41353;41354;41355;41356	41353					-0.20556882781841068
RCCCCCCL	8	Unmodified	_RCCCCCCL_					0	0	0		nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	MULTI-MSMS	A375_MHC_IP_R1	1	907.6602172851562	1	906.258123	905.250847	-0.34113	-0.00030915	-0.039624	-3.5909E-05	-0.38075	-0.00034506	906.2591132498385	9.4354	1.3175	9.4354	9.2476	10.565	0					362	200	2	0	0	0	0.77861	4	2194	2194;2239;2352;2387		0	0	1	213100			42430	14770	31164	31413	41357;41358;41359;41360	41357					-0.20556882781841068
RCCCCCCL	8	Unmodified	_RCCCCCCL_					0	0	0		nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	MULTI-MSMS	A375_MHC_IP_R1	1	906.6586303710938	1	906.258123	905.250847	-0.34118	-0.0003092	0.098799	8.9537E-05	-0.24238	-0.00021966	906.2592100017204	13.308	0.87007	13.308	12.78	13.65	0					227	130	2	0	0	0	0.77861	3	2935	2935;3024;3047		0	0	1	227520			42431	14770	31164	31413	41361;41362;41363	41361					-0.20556882781841068
RCCCCCCL	8	Unmodified	_RCCCCCCL_					0	0	0		nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	MULTI-MSMS	A375_MHC_IP_R1	1	907.6602783203125	1	906.258123	905.250847	-0.3411	-0.00030912	0.36088	0.00032705	0.019779	1.7925E-05	906.2594739689895	16.172	0.35374	16.172	15.911	16.265	0					79	51	2	0	0	0	0.77861	1	3714	3714		0	0	1	258210			42432	14770	31164	31413	41364	41364					-0.20556882781841068
RCCCCCCL	8	Unmodified	_RCCCCCCL_					0	0	0		nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	MULTI-MSMS	A375_MHC_IP_R1	1	906.660400390625	1	906.258123	905.250847	-0.34136	-0.00030936	0.77677	0.00070395	0.43541	0.00039459	906.259684701276	16.656	0.84113	16.656	16.265	17.106	0					169	122	2	0	0	0	0.77861	2	3806	3806;3946		0	0	1	290670			42433	14770	31164	31413	41365;41366	41365					-0.20556882781841068
RCCCCCCL	8	Unmodified	_RCCCCCCL_					0	0	0		nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	MULTI-MSMS	A375_MHC_IP_R1	1	906.6597290039062	1	906.258123	905.250847	-0.34135	-0.00030935	0.69066	0.00062591	0.34931	0.00031657	906.2597448307325	17.412	0.39319	17.412	17.106	17.499	0					79	52	2	0	0	0	0.77861	1	4077	4077		0	0	1	298540			42434	14770	31164	31413	41367	41367					-0.20556882781841068
RCCCCCCL	8	Unmodified	_RCCCCCCL_					0	0	0		nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	MULTI-MSMS	A375_MHC_IP_R1	1	906.6585083007812	1	906.258123	905.250847	-0.34108	-0.0003091	0.44875	0.00040668	0.10767	9.7578E-05	906.2595473932583	18.424	0.51594	18.424	18.146	18.662	0					88	57	2	0	0	0	0.77861	2	4387	4387;4420		0	0	1	226450			42435	14770	31164	31413	41368;41369	41368					-0.20556882781841068
RCCCCCCL	8	Unmodified	_RCCCCCCL_					0	0	0		nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	MULTI-MSMS	A375_MHC_IP_R2	2	907.6597290039062	1	906.258123	905.250847	-0.65975	-0.00059791	0.43829	0.0003972	-0.22146	-0.0002007	906.2594062683016	1.5453	0.60695	2.0043	1.8477	2.4547	0.45901					118	68	2	0	0	0	0.77861	2	494	494;571		0	0	1	231220			42436	14770	31164	31413	41370;41371	41370					-0.20556882781841068
RCCCCCCL	8	Unmodified	_RCCCCCCL_					0	0	0		nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	MULTI-MSMS	A375_MHC_IP_R2	2	906.6602172851562	1	906.258123	905.250847	-0.65983	-0.00059798	0.45826	0.00041531	-0.20157	-0.00018267	906.2594843495614	6.6052	0.73476	7.0203	6.5289	7.2637	0.4151					131	93	2	0	0	0	0.77861	2	2056	2056;2081		0	0	1	198900			42437	14770	31164	31413	41372;41373	41372					-0.20556882781841068
RCCCCCCL	8	Unmodified	_RCCCCCCL_					0	0	0		nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	MULTI-MSMS	A375_MHC_IP_R2	2	907.6588134765625	1	906.258123	905.250847	-0.65949	-0.00059767	0.82827	0.00075063	0.16878	0.00015296	906.2600695457984	17.183	0.50869	17.779	17.535	18.043	0.59616					118	69	2	0	0	0	0.77861	1	5062	5062		0	0	1	204930			42438	14770	31164	31413	41374	41374					-0.20556882781841068
RCCCCCCL	8	Unmodified	_RCCCCCCL_					0	0	0		nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	MULTI-MSMS	A375_MHC_IP_R2	2	906.6572265625	1	906.258123	905.250847	-0.65998	-0.00059811	0.64586	0.00058532	-0.014116	-1.2793E-05	906.2595205525605	17.73	0.6081	18.326	17.991	18.599	0.59616					59	41	2	0	0	0	0.77861	1	5258	5258		0	0	1	246690			42439	14770	31164	31413	41375	41375					-0.20556882781841068
RCCCCCCL	8	Unmodified	_RCCCCCCL_					0	0	0		nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	MULTI-SECPEP	A375_MHC_IP_R2	2	906.6572265625	1	906.258123	905.250847	-0.65951	-0.00059769	0.58911	0.00053389	-0.070398	-6.3799E-05	906.2598199654584	18.195	0.61096	18.798	18.342	18.953	0.60308					61	47	2	0	0	0	0.972	1	5258	5258		0	0	1	222830			42440	14770	31164	31413	41376	41376					-0.20556882781841068
RCCQSYDNFSY	11	Unmodified	_RCCQSYDNFSY_					0	0	0		ENSG00000101901|ENST00000394780|ALG13;nc|ENSG00000101901|Q9NP73-3|ALG13;nc|ENSG00000101901|Q9NP73-4|ALG13	ENSG00000101901|ENST00000394780|ALG13	ENSG00000101901|ENST00000394780|ALG13	MULTI-MSMS	A375_MHC_IP_R1	1	693.6680297851562	2	693.266087	1384.51762	-0.55538	-0.00038503	1.9825	0.0013744	1.4271	0.00098939	693.2679048585408	101.69	0.60629	101.69	101.34	101.95	0					24	11	3	0	0	0	0.53345	1	37365	37365		28.495	4.4739	1	2598500			42441	2335	31165	31414	41377	41377					-0.15925763221775924
RCLPLLRRL	9	Unmodified	_RCLPLLRRL_					0	0	0		ENST00000590602.5_1_17:76113350-76113936:-|nuORF	ENST00000590602.5_1_17:76113350-76113936:-|nuORF	ENST00000590602.5_1_17:76113350-76113936:-|nuORF	MSMS	A375_MHC_IP_R2	2	380.6025695800781	3	380.577977	1138.7121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.861	1	51.615	51.115	52.115	0.75406								0	0	0	0.15486	1	19133	19133		4.897	0	1				42442	13788	31166	31415	41378	41378					0.14829445507007222
RCLQRLLLRL	10	Unmodified	_RCLQRLLLRL_					0	0	0			REV__nc|ENSG00000130529|Q8TD43-2|TRPM4	REV__nc|ENSG00000130529|Q8TD43-2|TRPM4	MSMS	A375_MHC_IP_R2	2	642.7838745117188	2	642.408266	1282.80198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.14	1	145.16	144.66	145.66	0.021408								0	0	0	0.15637	1	56672	56672		0.45834	0	1		+		42443	18547	31167	31416	41379	41379					0.17189075115561536
RCQLGYKDY	9	Unmodified	_RCQLGYKDY_					0	0	0		ENSG00000101680|ENST00000389658|LAMA1;ENST00000579014.5_1_18:6942080-7042306:-|nuORF	ENSG00000101680|ENST00000389658|LAMA1	ENSG00000101680|ENST00000389658|LAMA1	MULTI-SECPEP	A375_MHC_IP_R1	1	573.6836547851562	2	573.274041	1144.53353	-0.24617	-0.00014112	-0.61007	-0.00034974	-0.85624	-0.00049086	573.2737738017458	60.518	0.81358	60.518	60.109	60.922	0					32	15	3	0	0	0	0.69507	1	21662	21662		19.257	0	1	2657800			42444	2318	31168	31417	41380	41380					-0.03295688922571571
RCRRRRRRRRL	11	Unmodified	_RCRRRRRRRRL_					0	0	0		ENST00000550735.6_1_12:112280040-112280175:+|nuORF	ENST00000550735.6_1_12:112280040-112280175:+|nuORF	ENST00000550735.6_1_12:112280040-112280175:+|nuORF	MSMS	A375_MHC_IP_R1	1	820.9107055664062	2	820.514183	1639.01381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.765	1	94.765	94.265	95.265	0								0	0	0	0.1636	1	34831	34831		0	0	1				42445	13374	31169	31418	41381	41381					0.21986604369726592
RCRRRRRRRRL	11	Unmodified	_RCRRRRRRRRL_					0	0	0		ENST00000550735.6_1_12:112280040-112280175:+|nuORF	ENST00000550735.6_1_12:112280040-112280175:+|nuORF	ENST00000550735.6_1_12:112280040-112280175:+|nuORF	MSMS	A375_MHC_IP_R2	2	820.4156494140625	2	820.514183	1639.01381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.431	1	92.165	91.665	92.665	0.7345								0	0	0	0.1636	1	34779	34779		0	0	1				42446	13374	31169	31418	41382	41382					0.21986604369726592
RCRSEYFR	8	Unmodified	_RCRSEYFR_					0	0	0			REV__ENSG00000162434|ENST00000342505|JAK1	REV__ENSG00000162434|ENST00000342505|JAK1	MULTI-SECPEP	A375_MHC_IP_R1	1	372.61322021484375	3	372.850425	1115.52945	0.56472	0.00021055	-0.48882	-0.00018226	0.075895	2.8297E-05	373.1848087708199	43.028	0.61042	43.028	42.79	43.4	0					20	11	3	0	0	0	0.972	1	14892	14892		4.5289	0.58447	1	1841000	+		42447	20255	31170	31419	41383	41383					-0.02369733625596382
RCSNASSLPR	10	Unmodified	_RCSNASSLPR_					0	0	0			REV__ENST00000556791.1_1_14:102499420-102503925:+|nuORF	REV__ENST00000556791.1_1_14:102499420-102503925:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	364.6549987792969	3	364.185585	1089.53493	0.079806	2.9064E-05	0.52475	0.00019111	0.60456	0.00022017	364.18584613294865	47.092	0.51339	47.092	46.749	47.263	0					13	9	2	0	0	0	0.93405	1	16607	16607		1.3296	0.46527	1	1198300	+		42448	26112	31171	31420	41384	41384					-0.006260548338104854
RCSNASSLPR	10	Unmodified	_RCSNASSLPR_					0	0	0			REV__ENST00000556791.1_1_14:102499420-102503925:+|nuORF	REV__ENST00000556791.1_1_14:102499420-102503925:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	364.185585	1089.53493	0.01676	6.1037E-06	0.045567	1.6595E-05	0.062327	2.2699E-05	364.1854358707826	45.983	0.40345	46.748	46.503	46.906	0.76519	-0.17222	-0.00044089	NaN	1.3296	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1074500	+		42449	26112	31171	31420							-0.006260548338104854
RCTPLNLTL	9	Unmodified	_RCTPLNLTL_					0	0	0			REV__OR2W1|p.G170R|1|0.27|ENSG00000204704|chr6:29044668-29044668|C/T|missense_variant	REV__OR2W1|p.G170R|1|0.27|ENSG00000204704|chr6:29044668-29044668|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	515.7099609375	2	515.789327	1029.5641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.094	1	74.832	74.332	75.332	0.73752								0	0	0	0.14169	1	28124	28124		29.082	3.6823	1		+		42450	27666	31172	31421	41385	41385					0.050500894624974535
RCWEWVWPRWL	11	Unmodified	_RCWEWVWPRWL_					0	0	0			REV__ENSG00000175707|ENST00000320567|KDF1	REV__ENSG00000175707|ENST00000320567|KDF1	MSMS	A375_MHC_IP_R1	1	539.6642456054688	3	539.602962	1615.78706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.068	1	23.068	22.568	23.568	0								0	0	0	0.1635	1	6271	6271		0.50596	0.051438	1		+		42451	21360	31173	31422	41386	41386					0.003795832475361749
RDCQLGPHH	9	Unmodified	_RDCQLGPHH_					0	0	0		ENSG00000197275|ENST00000336148|RAD54B	ENSG00000197275|ENST00000336148|RAD54B	ENSG00000197275|ENST00000336148|RAD54B	MSMS	A375_MHC_IP_R2	2	531.7085571289062	2	531.748524	1061.4825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.699	1	50.453	49.953	50.953	0.75406								0	0	0	0.15468	1	18677	18677		13.906	3.7227	1				42452	9139	31174	31423	41387	41387					-0.045785931767341026
RDDQRLVIG	9	Unmodified	_RDDQRLVIG_					0	0	0		ENSG00000183454|ENST00000330684|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	MSMS	A375_MHC_IP_R2	2	357.9308166503906	3	357.868362	1070.58326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.098	1	51.852	51.352	52.352	0.75406								0	0	0	0.15486	1	19225	19225		2.2828	0.19677	1				42453	8496	31175	31424	41388	41388					0.0507876207773279
RDDQSLRYK	9	Unmodified	_RDDQSLRYK_					0	0	0			REV__MMP25|p.D273N|1|0.25|ENSG00000008516|chr16:3057188-3057188|G/A|missense_variant	REV__MMP25|p.D273N|1|0.25|ENSG00000008516|chr16:3057188-3057188|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	393.62744140625	3	394.207155	1179.59963	-0.44548	-0.00017561	-0.63913	-0.00025195	-1.0846	-0.00042756	394.2070875852777	19.285	0.20251	19.888	19.783	19.986	0.60308					6	3	2	0	0	0	0.76187	1	5944	5944		7.609	3.4194	1	629660	+		42454	16175	31176	31425	41389	41389					0.017018432438362652
RDEAQGRLPQ	10	Unmodified	_RDEAQGRLPQ_					0	0	0			REV__ENST00000557275.5_1_14:95875019-95875331:-|nuORF	REV__ENST00000557275.5_1_14:95875019-95875331:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	389.9561767578125	3	390.538904	1168.59488	0.03338	1.3036E-05	1.4377	0.00056149	1.4711	0.00057453	390.53958004292997	27.167	0.40408	27.167	27.027	27.432	0					11	7	2	0	0	0	0.93578	1	8263	8263		1.5923	0	1	2912200	+		42455	26120	31177	31426	41390	41390					0.01732959101104825
RDEGIRNLKEF	11	Unmodified	_RDEGIRNLKEF_					0	0	0			REV__nc|ENSG00000185324|Q15131-6|CDK10	REV__nc|ENSG00000185324|Q15131-6|CDK10	MULTI-MSMS	A375_MHC_IP_R2	2	459.63677978515625	3	459.58088	1375.72081	-0.65562	-0.00030131	-0.17106	-7.8617E-05	-0.82668	-0.00037993	459.5807741326001	23.779	0.56068	24.41	24.232	24.792	0.63014					22	10	4	0	0	0	0.57632	1	7699	7699		25.155	1.8153	1	31672000	+		42456	27412	31178	31427	41391	41391					0.04798045886491309
RDELWPITRRI	11	Unmodified	_RDELWPITRRI_					0	0	0			REV__nc|ENSG00000130402|O43707-2|ACTN4	REV__nc|ENSG00000130402|O43707-2|ACTN4	MSMS	A375_MHC_IP_R2	2	485.6543273925781	3	485.612404	1453.81538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.58	1	131.77	131.27	132.27	0.18953								0	0	0	0.16316	1	51757	51757		2.2527	0.79761	1		+		42457	18538	31179	31428	41392	41392					0.1066260442848943
RDESRVRQWL	10	Unmodified	_RDESRVRQWL_					0	0	0			REV__ENST00000555045.1_1_14:24423187-24423353:-|nuORF	REV__ENST00000555045.1_1_14:24423187-24423353:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	449.65673828125	3	448.90922	1343.70583	0.11616	5.2143E-05	-1.3715	-0.00061568	-1.2554	-0.00056354	448.90885768199223	21.315	0.35661	21.315	21.199	21.555	0					11	6	2	0	0	0	0.92832	1	5598	5598		12.175	0	1	1604000	+		42458	26091	31180	31429	41393	41393					0.04772598809176998
RDFFLDLCDK	10	Unmodified	_RDFFLDLCDK_					0	0	0		tr|U7STN1|U7STN1_FUSNU23SrRNA(-C5)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01407PE=3SV=1	tr|U7STN1|U7STN1_FUSNU23SrRNA(-C5)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01407PE=3SV=1	tr|U7STN1|U7STN1_FUSNU23SrRNA(-C5)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01407PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	424.60894775390625	3	424.541146	1270.60161	-0.14464	-6.1405E-05	0.52492	0.00022285	0.38028	0.00016145	424.5415687519704	75.924	0.45458	75.924	75.815	76.269	0					10	8	2	0	0	0	0.57505	1	27682	27682		14.957	3.8919	1	1156100			42459	29708	31181	31430	41394	41394					-0.0228686406255747
RDFIRAEKLVN	11	Unmodified	_RDFIRAEKLVN_					0	0	0			REV__nc|ENSG00000147162|O15294-2|OGT	REV__nc|ENSG00000147162|O15294-2|OGT	MULTI-MSMS	A375_MHC_IP_R1	1	454.6611328125	3	454.261371	1359.76228	0.10043	4.562E-05	-0.50213	-0.0002281	-0.4017	-0.00018248	454.2610204341254	21.992	0.45839	21.992	21.808	22.267	0					18	8	3	0	0	0	0.72773	1	5861	5861		11.065	0.75005	1	2149700	+		42460	27279	31182	31431	41395	41395					0.09679226645835115
RDFIRAEKLVN	11	Unmodified	_RDFIRAEKLVN_					0	0	0			REV__nc|ENSG00000147162|O15294-2|OGT	REV__nc|ENSG00000147162|O15294-2|OGT	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	454.261371	1359.76228	0.10043	4.562E-05	-0.50213	-0.0002281	-0.4017	-0.00018248	454.2610204341254	21.992	0.45839	21.992	21.808	22.267	0	0	0	NaN	11.065	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2149700	+		42461	27279	31182	31431							0.09679226645835115
RDFRRELEERE	11	Unmodified	_RDFRRELEERE_					0	0	0		ENSG00000150316|ENST00000279839|CWC15;ENST00000539856.5_1_11:94704113-94705349:-|nuORF	ENSG00000150316|ENST00000279839|CWC15	ENSG00000150316|ENST00000279839|CWC15	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1429443359375	3	512.262211	1533.7648	-0.97994	-0.00050199	-3.112	-0.0015942	-4.0919	-0.0020961	512.5947200442466	26.9	0.30687	27.56	27.313	27.62	0.65992					10	5	3	0	0	0	0.99945	1	9155	9155		4.1166	2.6615	1	1220800			42462	5840	31183	31432	41396	41396					0.019270303128450905
RDGWAAAEPF	10	Unmodified	_RDGWAAAEPF_					0	0	0		ENST00000260641.9_1_2:65496276-65496330:+|nuORF	ENST00000260641.9_1_2:65496276-65496330:+|nuORF	ENST00000260641.9_1_2:65496276-65496330:+|nuORF	MSMS	A375_MHC_IP_R2	2	373.5859069824219	3	373.845446	1118.51451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.062	1	18.665	18.165	19.165	0.60308								0	0	0	0.15642	1	5352	5352		0	0	1				42463	10269	31184	31433	41397	41397					-0.04000902221991964
RDHRRKHFCNL	11	Unmodified	_RDHRRKHFCNL_					0	0	0		nc|ENSG00000126804|Q9Y2K1-2|ZBTB1;ENSG00000126804|ENST00000683701|ZBTB1	nc|ENSG00000126804|Q9Y2K1-2|ZBTB1	nc|ENSG00000126804|Q9Y2K1-2|ZBTB1	MSMS	A375_MHC_IP_R2	2	494.4475402832031	3	494.593349	1480.75822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.53	1	104.3	103.8	104.8	0.76428								0	0	0	0.16332	1	39209	39209		1.4551	0.24029	1				42464	4059	31185	31434	41398	41398					0.03706858671171176
RDIEGVIKQY	10	Unmodified	_RDIEGVIKQY_					0	0	0		nc|ENSG00000198276|Q9NWZ5-4|UCKL1;ENSG00000198276|ENST00000354216|UCKL1;nc|ENSG00000198276|Q9NWZ5-3|UCKL1;nc|ENSG00000198276|Q9NWZ5-2|UCKL1	nc|ENSG00000198276|Q9NWZ5-4|UCKL1	nc|ENSG00000198276|Q9NWZ5-4|UCKL1	MULTI-SECPEP	A375_MHC_IP_R1	1	407.3082275390625	3	407.559305	1219.65609	0.10449	4.2586E-05	0.52761	0.00021503	0.6321	0.00025762	407.55953874958266	44.465	0.51199	44.465	44.165	44.676	0					14	9	2	0	0	0	0.43087	1	15500	15500		42.862	26.588	1	2251900			42465	9249	31186	31435	41399	41399					0.05504471080530493
RDIEGVIKQY	10	Unmodified	_RDIEGVIKQY_					0	0	0		nc|ENSG00000198276|Q9NWZ5-4|UCKL1;ENSG00000198276|ENST00000354216|UCKL1;nc|ENSG00000198276|Q9NWZ5-3|UCKL1;nc|ENSG00000198276|Q9NWZ5-2|UCKL1	nc|ENSG00000198276|Q9NWZ5-4|UCKL1	nc|ENSG00000198276|Q9NWZ5-4|UCKL1	MULTI-SECPEP	A375_MHC_IP_R1	1	611.2349243164062	2	610.83532	1219.65609	-0.004791	-2.9265E-06	-0.38068	-0.00023253	-0.38547	-0.00023546	610.835058044228	44.462	0.51199	44.462	44.165	44.676	0					21	9	3	0	0	0	0.40545	1	15496	15496		55.235	23.966	1	5043000			42466	9249	31186	31435	41400	41400					0.05504471080530493
RDIEGVIKQY	10	Unmodified	_RDIEGVIKQY_					0	0	0		nc|ENSG00000198276|Q9NWZ5-4|UCKL1;ENSG00000198276|ENST00000354216|UCKL1;nc|ENSG00000198276|Q9NWZ5-3|UCKL1;nc|ENSG00000198276|Q9NWZ5-2|UCKL1	nc|ENSG00000198276|Q9NWZ5-4|UCKL1	nc|ENSG00000198276|Q9NWZ5-4|UCKL1	MULTI-MSMS	A375_MHC_IP_R2	2	407.9591064453125	3	407.559305	1219.65609	0.20329	8.2854E-05	-0.39852	-0.00016242	-0.19523	-7.9568E-05	407.5590731911485	43.686	0.65696	44.455	44.025	44.682	0.7691					16	12	2	0	0	0	0.10365	1	16319	16319		49.159	28.288	1	2645300			42467	9249	31186	31435	41401	41401					0.05504471080530493
RDIEGVIKQY	10	Unmodified	_RDIEGVIKQY_					0	0	0		nc|ENSG00000198276|Q9NWZ5-4|UCKL1;ENSG00000198276|ENST00000354216|UCKL1;nc|ENSG00000198276|Q9NWZ5-3|UCKL1;nc|ENSG00000198276|Q9NWZ5-2|UCKL1	nc|ENSG00000198276|Q9NWZ5-4|UCKL1	nc|ENSG00000198276|Q9NWZ5-4|UCKL1	MULTI-SECPEP	A375_MHC_IP_R2	2	611.23486328125	2	610.83532	1219.65609	-0.30476	-0.00018616	-0.20538	-0.00012545	-0.51014	-0.00031161	610.8351783857436	43.72	0.55445	44.489	44.228	44.782	0.7691					21	10	3	0	0	0	0.65827	1	16311	16311		39.213	19.851	1	4868900			42468	9249	31186	31435	41402	41402					0.05504471080530493
RDIFRKYPNKY	11	Unmodified	_RDIFRKYPNKY_					0	0	0		nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	MSMS	A375_MHC_IP_R1	1	750.1726684570312	2	750.409518	1498.80448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.239	1	63.239	62.739	63.739	0								0	0	0	0.16307	1	22853	22853		2.7352	0	1				42469	909	31187	31436	41403	41403					0.07503202054226676
RDIPKIAKAP	10	Unmodified	_RDIPKIAKAP_					0	0	0			REV__ENST00000418756.5_1_7:75141716-75156997:-|nuORF;REV__nc|ENSG00000241350|Q13670|PMS2P11	REV__ENST00000418756.5_1_7:75141716-75156997:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	370.6324157714844	3	370.232752	1107.67643	-0.44398	-0.00016438	0.0096307	3.5656E-06	-0.43435	-0.00016081	370.23265568450273	29.031	1.303	29.729	29.234	30.537	0.69872					44	25	2	0	0	0	0.68889	1	10140	10140		14.218	0.6033	1	10771000	+		42470	24562;27519	31188	31437	41404	41404					0.12689686530984545
RDIRENIVRY	10	Unmodified	_RDIRENIVRY_					0	0	0		ENSG00000081138|ENST00000397968|CDH7	ENSG00000081138|ENST00000397968|CDH7	ENSG00000081138|ENST00000397968|CDH7	MULTI-MSMS	A375_MHC_IP_R2	2	445.6488952636719	3	445.249354	1332.72623	-0.80922	-0.0003603	-0.020719	-9.2252E-06	-0.82994	-0.00036953	445.24929886162744	26.052	0.35686	26.712	26.5	26.857	0.65992					13	6	3	0	0	0	0.72321	1	8773	8773		1.9064	0	1	3646500			42471	1731	31189	31438	41405	41405					0.07317769469000268
RDIRENIVRY	10	Unmodified	_RDIRENIVRY_					0	0	0		ENSG00000081138|ENST00000397968|CDH7	ENSG00000081138|ENST00000397968|CDH7	ENSG00000081138|ENST00000397968|CDH7	MULTI-MATCH	A375_MHC_IP_R1	1		3	445.249354	1332.72623	-0.37758	-0.00016812	-0.62404	-0.00027786	-1.0016	-0.00044597	445.2491902068854	26.668	0.45555	26.668	26.373	26.828	0	-0.021845	-0.00042157	NaN	1.9064	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3482400			42472	1731	31189	31438							0.07317769469000268
RDKKKKKKKQ	10	Unmodified	_RDKKKKKKKQ_					0	0	0			REV__ENSG00000167978|ENST00000301740|SRRM2	REV__ENSG00000167978|ENST00000301740|SRRM2	MSMS	A375_MHC_IP_R1	1	657.941162109375	2	657.938245	1313.86194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.88	1	113.88	113.38	114.38	0								0	0	0	0.15591	1	41747	41747		1.6526	0.32309	1		+		42473	20809	31190	31439	41406	41406					0.217560890504501
RDKKTLIHSKG	11	Unmodified	_RDKKTLIHSKG_					0	0	0			REV__tr|U7SNE9|U7SNE9_FUSNULargeribosomalsubunitproteinbL35OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpmIPE=3SV=1	REV__tr|U7SNE9|U7SNE9_FUSNULargeribosomalsubunitproteinbL35OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpmIPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	428.6571044921875	3	428.257849	1281.75172	-0.22678	-9.7122E-05	-0.77214	-0.00033067	-0.99892	-0.0004278	428.25747819029937	129.81	1.5169	130.03	129.19	130.7	0.21419					68	29	3	0	0	0	0.73818	1	50888	50888		1.1098	0.41209	1	10623000	+		42474	28325	31191	31440	41407	41407					0.12211243991396259
RDLLRLLRLY	10	Unmodified	_RDLLRLLRLY_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MSMS	A375_MHC_IP_R2	2	666.05322265625	2	665.919521	1329.82449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.62	1	78.363	77.863	78.863	0.74293								0	0	0	0.15585	1	29475	29475		1.8442	0	1		+		42475	27313	31192	31441	41408	41408					0.1727699778484748
RDLPIKLNQ	9	Unmodified	_RDLPIKLNQ_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-SECPEP	A375_MHC_IP_R1	1	365.61322021484375	3	366.220624	1095.64004	0.055472	2.0315E-05	0.49561	0.0001815	0.55108	0.00020182	366.22070510255475	39.912	0.35608	39.912	39.744	40.1	0					11	6	2	0	0	0	0.76642	1	13628	13628		12.873	0	1	1322900			42476	4801	31193	31442	41409	41409					0.09604809634265621
RDLQFQPVSI	10	Unmodified	_RDLQFQPVSI_					0	0	0		MUC4|p.R4593Q|1|0.26|ENSG00000145113|chr3:195765290-195765290|C/T|missense_variant	MUC4|p.R4593Q|1|0.26|ENSG00000145113|chr3:195765290-195765290|C/T|missense_variant	MUC4|p.R4593Q|1|0.26|ENSG00000145113|chr3:195765290-195765290|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	401.5916748046875	3	401.555784	1201.64552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.571	1	31.571	31.071	32.071	0								0	0	0	0.15152	1	10118	10118		14.957	8.7228	1				42477	14424	31194	31443	41410	41410					0.05276488426079595
RDLQLWLIMAL	11	Unmodified	_RDLQLWLIMAL_					0	0	0			REV__nc|ENSG00000211818|A0A0B4J263|TRAV39	REV__nc|ENSG00000211818|A0A0B4J263|TRAV39	MULTI-MSMS	A375_MHC_IP_R1	1	686.7943725585938	2	686.39449	1370.77443	-0.97834	-0.00067153	0.70783	0.00048585	-0.27051	-0.00018568	686.3952238919027	140.73	0.56877	140.73	140.39	140.96	0					25	10	4	0	0	0	0.7039	1	54042	54042		15.248	7.093	1	6295700	+		42478	27479	31195	31444	41411	41411					0.1038712706467777
RDLVANWQ	8	Unmodified	_RDLVANWQ_					0	0	0			REV__tr|U7T3L4|U7T3L4_FUSNUPeptidyl-prolylcis-transisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00345PE=3SV=1	REV__tr|U7T3L4|U7T3L4_FUSNUPeptidyl-prolylcis-transisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00345PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	502.6822509765625	2	501.261791	1000.50903	-0.58222	-0.00029184	-0.46858	-0.00023488	-1.0508	-0.00052673	501.26156912374984	67.447	1.219	68.183	67.75	68.969	0.73631					57	23	4	0	0	0	0.77643	1	25642	25642		7.9102	0	1	12268000	+		42479	28780	31196	31445	41412	41412					0.008794189862214807
RDNFPSRQEER	11	Unmodified	_RDNFPSRQEER_					0	0	0			REV__ENSG00000165494|ENST00000690938|PCF11	REV__ENSG00000165494|ENST00000690938|PCF11	MSMS	A375_MHC_IP_R1	1	717.3475341796875	2	717.347646	1432.68074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.41	1	105.41	104.91	105.91	0								0	0	0	0.16265	1	38697	38697		4.897	0	1		+		42480	20587	31197	31446	41413	41413					-0.018295007840379185
RDPATEDTI	9	Unmodified	_RDPATEDTI_					0	0	0		EPPK1|p.G1984E|1|0.13|ENSG00000261150|chr8:143867303-143867303|C/T|missense_variant	EPPK1|p.G1984E|1|0.13|ENSG00000261150|chr8:143867303-143867303|C/T|missense_variant	EPPK1|p.G1984E|1|0.13|ENSG00000261150|chr8:143867303-143867303|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	509.6457214355469	2	509.246003	1016.47745	-0.62905	-0.00032034	-0.29098	-0.00014818	-0.92003	-0.00046852	509.2458647324358	87.075	0.60885	87.808	87.458	88.067	0.733					22	11	3	0	0	0	0.4867	1	33128	33128		20.454	3.5113	1	2727300			42481	13950	31198	31447	41414	41414					-0.030126185583753795
RDPLDALPVH	10	Unmodified	_RDPLDALPVH_					0	0	0		ENSG00000187017|ENST00000645284|ESPN;ESPN|p.N358Kfs*12|1|0.37|ENSG00000187017|chr1:6444561-6444562|-/A|frameshift_variant	ENSG00000187017|ENST00000645284|ESPN	ENSG00000187017|ENST00000645284|ESPN	MULTI-SECPEP	A375_MHC_IP_R2	2	566.1768798828125	2	566.809105	1131.60366	-0.34382	-0.00019488	3.1399	0.0017797	2.796	0.0015848	566.8102819016318	63.243	0.40542	63.985	63.787	64.192	0.7416					9	7	2	0	0	0	0.87163	1	24011	24011		19.257	10.512	1	721560			42482	8800	31199	31448	41415	41415					0.043119327375507055
RDPQFQGLFQY	11	Unmodified	_RDPQFQGLFQY_					0	0	0		nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF;ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477454.1_1_7:4827252-4828627:+|nuORF;ENST00000477680.5_1_7:4815294-4829561:+|nuORF	nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF	nc|ENSG00000242802|O43299-2|AP5Z1	MSMS	A375_MHC_IP_R1	1	699.8413696289062	2	699.843676	1397.6728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.54	1	122.54	122.04	123.04	0								0	0	0	0.16124	1	45619	45619		12.241	1.4167	1				42483	9803;12446	31200	31449	41416	41416					-0.010130280335260977
RDPRISVIV	9	Unmodified	_RDPRISVIV_					0	0	0		ENST00000326956.11_1_1:54691347-54691953:-|nuORF	ENST00000326956.11_1_1:54691347-54691953:-|nuORF	ENST00000326956.11_1_1:54691347-54691953:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	353.2586975097656	3	352.217102	1053.62948	-0.5088	-0.00017921	-0.056027	-1.9734E-05	-0.56483	-0.00019894	352.2170585199199	33.287	0.66167	34.039	33.686	34.348	0.75225					29	12	4	0	0	0	0.69884	1	11891	11891		7.1017	0.47135	1	5013100			42484	10737	31201	31450	41417	41417					0.10480826979824087
RDPRTPKIVSP	11	Unmodified	_RDPRTPKIVSP_					0	0	0			REV__ENST00000483195.5_1_2:74452054-74512997:-|nuORF	REV__ENST00000483195.5_1_2:74452054-74512997:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	633.4310302734375	2	633.369861	1264.72517	-0.88564	-0.00056094	-0.7849	-0.00049713	-1.6705	-0.0010581	633.3692105624137	130.95	6.5085	130.95	130.41	136.92	0					397	127	7	0	0	0	0.73679	1	51165	51165		2.7352	0	1	1441100000	+		42485	22107	31202	31451	41418	41418					0.1033955510006308
RDQIAEILA	9	Unmodified	_RDQIAEILA_					0	0	0			REV__ENSG00000111424|ENST00000549336|VDR	REV__ENSG00000111424|ENST00000549336|VDR	MULTI-SECPEP	A375_MHC_IP_R2	2	514.3941040039062	2	514.790381	1027.56621	-0.77123	-0.00039702	0.03939	2.0278E-05	-0.73184	-0.00037674	514.7903778713159	77.525	1.3246	78.268	77.757	79.082	0.74293					60	25	4	0	0	0	0.35487	1	29328	29328		43.858	7.7313	1	57390000	+		42486	17672	31203	31452	41419	41419					0.053528414719721695
RDRDRDREDWS	11	Unmodified	_RDRDRDREDWS_					0	0	0		DHX15|p.R36W|1|0.59|ENSG00000109606|chr4:24576644-24576644|G/A|missense_variant	DHX15|p.R36W|1|0.59|ENSG00000109606|chr4:24576644-24576644|G/A|missense_variant	DHX15|p.R36W|1|0.59|ENSG00000109606|chr4:24576644-24576644|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	503.3001708984375	3	502.566182	1504.67672	-0.59103	-0.00029703	-0.020161	-1.0132E-05	-0.61119	-0.00030716	502.56630901894835	63.061	0.70781	63.804	63.434	64.142	0.74263					39	13	5	0	0	0	0.99971	1	23880	23880		3.8459	1.2147	1	12174000			42487	738	31204	31453	41420	41420					-0.05543590277761723
RDREYIALY	9	Unmodified	_RDREYIALY_					0	0	0		ENST00000266746.10_1_12:100550719-100551139:-|nuORF	ENST00000266746.10_1_12:100550719-100551139:-|nuORF	ENST00000266746.10_1_12:100550719-100551139:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	400.612060546875	3	400.212017	1197.61422	-0.23123	-9.2542E-05	0.5936	0.00023757	0.36237	0.00014502	400.21227321831515	39.334	0.40528	39.334	39.187	39.592	0					12	7	2	0	0	0	0.76452	1	13466	13466		12.241	0	1	2123500			42488	10356	31205	31454	41421	41421					0.02331915391982875
RDRLRRMREWW	11	Unmodified	_RDRLRRMREWW_					0	0	0		ENSG00000106484|ENST00000223215|MEST	ENSG00000106484|ENST00000223215|MEST	ENSG00000106484|ENST00000223215|MEST	MULTI-SECPEP	A375_MHC_IP_R1	1	554.669189453125	3	553.963553	1658.86883	-0.8855	-0.00049054	1.401	0.0007761	0.51549	0.00028556	554.2999006740176	67.424	0.25507	67.424	67.348	67.603	0					5	4	2	0	0	0	1.001	1	24429	24429		0.50596	0.50596	1	1045800			42489	2695	31206	31455	41422	41422					0.06575078659352585
RDRPALPA	8	Unmodified	_RDRPALPA_					0	0	0			REV__ENST00000526623.2_1_11:64948860-64949022:-|nuORF	REV__ENST00000526623.2_1_11:64948860-64949022:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	448.6595458984375	2	448.259051	894.503549	0.2748	0.00012318	0.074248	3.3282E-05	0.34905	0.00015646	448.25896400672946	126.68	1.5184	126.68	126.25	127.77	0					70	29	4	0	0	0	0.77717	1	48304	48304		5.2307	0	1	229190000	+		42490	25777	31207	31456	41423	41423					0.05207740194418875
RDRPALPA	8	Unmodified	_RDRPALPA_					0	0	0			REV__ENST00000526623.2_1_11:64948860-64949022:-|nuORF	REV__ENST00000526623.2_1_11:64948860-64949022:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	448.6587219238281	2	448.259051	894.503549	-0.28179	-0.00012632	0.55684	0.00024961	0.27504	0.00012329	448.2591976183269	126.26	2.2779	126.56	126.12	128.4	0.2951					93	44	5	0	0	0	0.77717	1	49321	49321		5.2307	0	1	304530000	+		42491	25777	31207	31456	41424	41424					0.05207740194418875
RDRQTNHCY	9	Unmodified	_RDRQTNHCY_					0	0	0		ENSG00000131462|ENST00000251413|TUBG1;ENSG00000037042|ENST00000251412|TUBG2	ENSG00000131462|ENST00000251413|TUBG1	ENSG00000131462|ENST00000251413|TUBG1	MULTI-MSMS	A375_MHC_IP_R1	1	597.6686401367188	2	596.767446	1191.52034	0.12714	7.5872E-05	-0.49272	-0.00029404	-0.36558	-0.00021817	596.7670422826558	69.482	0.75926	69.482	69.224	69.983	0					26	14	3	0	0	0	0.58047	1	25208	25208		15.847	1.4418	1	5166900			42492	1143	31208	31457	41425	41425					-0.06776126981935704
RDRRWKEKWKI	11	Unmodified	_RDRRWKEKWKI_					0	0	0		ENST00000391743.7_1_19:54872771-54881934:-|nuORF	ENST00000391743.7_1_19:54872771-54881934:-|nuORF	ENST00000391743.7_1_19:54872771-54881934:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	801.3619995117188	2	800.962783	1599.91101	-0.46103	-0.00036927	-0.68175	-0.00054606	-1.1428	-0.00091532	800.9622525267226	64.552	0.60892	64.552	64.191	64.8	0					25	11	3	0	0	0	0.73906	1	23317	23317		0.26902	0.26902	1	5927900			42493	11408	31209	31458	41426	41426					0.13505377339379265
RDRTLNNL	8	Unmodified	_RDRTLNNL_					0	0	0			REV__nc|ENSG00000165626|Q8N7W2-3|BEND7	REV__nc|ENSG00000165626|Q8N7W2-3|BEND7	MSMS	A375_MHC_IP_R1	1	501.1790466308594	2	501.277972	1000.54139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.185	1	88.185	87.685	88.685	0								0	0	0	0.16876	1	32369	32369		30.225	5.5509	1		+		42494	27332	31210	31459	41427	41427					0.041142063892380065
RDRWLRLK	8	Unmodified	_RDRWLRLK_					0	0	0			REV__ENST00000354886.6_1_14:61447871-61447979:+|nuORF	REV__ENST00000354886.6_1_14:61447871-61447979:+|nuORF	MSMS	A375_MHC_IP_R2	2	381.60205078125	3	381.568358	1141.68324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.624	1	20.234	19.734	20.734	0.61029								0	0	0	0.16876	1	6044	6044		5.2969	0.24936	1		+		42495	23815	31211	31460	41428	41428					0.11807044202191719
RDSVFIIPK	9	Unmodified	_RDSVFIIPK_					0	0	0			REV__ENST00000565559.5_2_15:42697105-42701567:+|nuORF	REV__ENST00000565559.5_2_15:42697105-42701567:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	359.2813720703125	3	358.88172	1073.62333	0.042061	1.5095E-05	-0.5016	-0.00018001	-0.45954	-0.00016492	358.88155654063127	31.324	0.6576	31.324	30.959	31.616	0					22	12	2	0	0	0	0.7235	1	10062	10062		4.897	0.70751	1	3008900	+		42496	16974	31212	31461	41429	41429					0.08946308748318188
RDTRPTEAW	9	Unmodified	_RDTRPTEAW_					0	0	0			REV__ENSG00000115524|ENST00000335508|SF3B1	REV__ENSG00000115524|ENST00000335508|SF3B1	MULTI-SECPEP	A375_MHC_IP_R2	2	377.6034851074219	3	377.856233	1130.54687	-0.18237	-6.8911E-05	0.0078763	2.9761E-06	-0.1745	-6.5935E-05	377.8562219202996	23.07	0.40837	23.7	23.47	23.878	0.63014					11	7	2	0	0	0	0.72623	1	7364	7364		13.615	5.1706	1	2037700	+		42497	17893	31213	31462	41430	41430					-0.01318114818968752
RDTYFRDLFYQ	11	Unmodified	_RDTYFRDLFYQ_					0	0	0			REV__PDK3|p.N157D|1|0.67|ENSG00000067992|chrX:24503475-24503475|A/G|missense_variant	REV__PDK3|p.N157D|1|0.67|ENSG00000067992|chrX:24503475-24503475|A/G|missense_variant	MSMS	A375_MHC_IP_R1	1	508.6457214355469	3	508.580769	1522.72048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.24	1	42.24	41.74	42.74	0								0	0	0	0.1624	1	14628	14628		6.2344	3.6031	1		+		42498	27759	31214	31463	41431	41431					-0.019973738333419533
RDYILNKRY	9	Unmodified	_RDYILNKRY_					0	0	0		ENST00000478863.5_1_19:10666000-10676642:-|nuORF;ENSG00000129347|ENST00000312962|KRI1	ENST00000478863.5_1_19:10666000-10676642:-|nuORF	ENST00000478863.5_1_19:10666000-10676642:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	414.6309509277344	3	414.231412	1239.67241	0.14362	5.949E-05	-1.0547	-0.00043688	-0.91106	-0.00037739	414.23111431862844	19.343	0.23279	19.343	19.238	19.471	0					7	4	2	0	0	0	0.67152	1	4800	4800		9.544	1.2575	1	12057000			42499	4188	31215	31464	41432	41432					0.062155970372714364
RDYILNKRY	9	Unmodified	_RDYILNKRY_					0	0	0		ENST00000478863.5_1_19:10666000-10676642:-|nuORF;ENSG00000129347|ENST00000312962|KRI1	ENST00000478863.5_1_19:10666000-10676642:-|nuORF	ENST00000478863.5_1_19:10666000-10676642:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	414.231412	1239.67241	0.14362	5.949E-05	-1.0547	-0.00043688	-0.91106	-0.00037739	414.23111431862844	19.343	0.23279	19.343	19.238	19.471	0	0	0	NaN	9.544	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12057000			42500	4188	31215	31464							0.062155970372714364
RDYQLRVF	8	Unmodified	_RDYQLRVF_					0	0	0			REV__ENST00000394228.5_1_4:140217487-140223649:-|nuORF	REV__ENST00000394228.5_1_4:140217487-140223649:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	366.90118408203125	3	366.201452	1095.58253	0.072148	2.6421E-05	-0.31727	-0.00011618	-0.24512	-8.9764E-05	366.2011538566829	27.041	0.90731	27.041	26.575	27.482	0					38	17	4	0	0	0	0.972	1	8229	8229		10.074	2.465	1	11674000	+		42501	24303	31216	31465	41433	41433					0.038559674286943846
RDYRYHSDWQM	11	Unmodified	_RDYRYHSDWQM_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MSMS	A375_MHC_IP_R2	2	519.6364135742188	3	519.561492	1555.66265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.161	1	35.924	35.424	36.424	0.76338								0	0	0	0.16336	1	12732	12732		1.2148	0.76031	1				42502	6048	31217	31466	41434	41434					-0.09295959030418999
REAALKEDF	9	Unmodified	_REAALKEDF_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;ENST00000469086.5_1_22:39136824-39138467:-|nuORF;ENST00000477262.5_1_22:39135390-39138407:-|nuORF	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-SECPEP	A375_MHC_IP_R1	1	540.1801147460938	2	539.780013	1077.54547	-0.57676	-0.00031132	0.049439	2.6686E-05	-0.52732	-0.00028464	539.7800329040115	28.67	0.40489	28.67	28.44	28.845	0					12	7	2	0	0	0	0.59614	1	8895	8895		28.495	9.2375	1	2459300			42503	2144	31218	31467	41435	41435					0.009802510922554575
READLDFARQY	11	Unmodified	_READLDFARQY_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	A375_MHC_IP_R1	1	462.2929992675781	3	461.893236	1382.65788	0.13871	6.407E-05	-0.27938	-0.00012905	-0.14067	-6.4976E-05	461.8931248014041	48.442	0.50648	48.442	48.122	48.629	0					23	9	3	0	0	0	0.0042241	1	17058	17058		96.24	83.384	1	9037200			42504	4338	31219	31468	41436	41436					-0.018145199015407343
READLDFARQY	11	Unmodified	_READLDFARQY_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-SECPEP	A375_MHC_IP_R1	1	692.7359008789062	2	692.336215	1382.65788	-0.2424	-0.00016782	0.26402	0.00018279	0.021615	1.4965E-05	692.3363165554784	48.419	0.30298	48.419	48.274	48.577	0					11	5	3	0	0	0	0.99759	1	17106	17106		5.7834	4.5901	1	2314500			42505	4338	31219	31468	41437	41437					-0.018145199015407343
READLDFARQY	11	Unmodified	_READLDFARQY_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	A375_MHC_IP_R2	2	462.62744140625	3	461.893236	1382.65788	-0.36182	-0.00016712	-0.15435	-7.1292E-05	-0.51617	-0.00023841	461.89310092628165	47.689	0.65876	48.451	48.174	48.833	0.76128					31	12	4	0	0	0	0.027075	1	17884	17884		83.652	71.424	1	9126900			42506	4338	31219	31468	41438	41438					-0.018145199015407343
READLDFARQY	11	Unmodified	_READLDFARQY_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	A375_MHC_IP_R2	2	692.7359008789062	2	692.336215	1382.65788	-0.54727	-0.00037889	-0.36322	-0.00025147	-0.91049	-0.00063037	692.335827961338	47.722	0.35609	48.483	48.275	48.632	0.76128					14	6	3	0	0	0	0.73235	1	17929	17929		11.518	7.9214	1	2499700			42507	4338	31219	31468	41439	41439					-0.018145199015407343
READQPLRTY	10	Unmodified	_READQPLRTY_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-MSMS	A375_MHC_IP_R1	1	417.28240966796875	3	416.882559	1247.62585	0.19848	8.2744E-05	-0.48911	-0.0002039	-0.29063	-0.00012116	416.88234317731195	24.853	0.50632	24.853	24.698	25.204	0					27	9	4	0	0	0	0.011522	1	7142	7142		94.801	79.844	1	38484000			42508	5536	31220	31469	41440	41440					0.011941124153509008
READQPLRTY	10	Unmodified	_READQPLRTY_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-SECPEP	A375_MHC_IP_R1	1	625.2197875976562	2	624.820201	1247.62585	-0.55903	-0.00034929	0.053154	3.3211E-05	-0.50588	-0.00031608	624.8200444499705	24.826	0.71	24.826	24.698	25.408	0					26	13	3	0	0	0	0.022197	1	7141	7141		121.93	79.617	1	31310000			42509	5536	31220	31469	41441	41441					0.011941124153509008
READQPLRTY	10	Unmodified	_READQPLRTY_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-MSMS	A375_MHC_IP_R2	2	417.28228759765625	3	416.882559	1247.62585	-0.33786	-0.00014085	-0.049727	-2.073E-05	-0.38758	-0.00016158	416.88253173772193	24.238	0.71081	24.882	24.653	25.364	0.64368					35	13	3	0	0	0	0.011657	1	7933	7933		92.409	70.61	1	66976000			42510	5536	31220	31469	41442	41442					0.011941124153509008
READQPLRTY	10	Unmodified	_READQPLRTY_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-SECPEP	A375_MHC_IP_R2	2	625.219482421875	2	624.820201	1247.62585	-1.0804	-0.00067508	0.3731	0.00023312	-0.70734	-0.00044196	624.8203706057097	24.238	0.55906	24.882	24.755	25.314	0.64368					25	10	4	0	0	0	0.027177	1	7934	7934		112.95	77.334	1	36938000			42511	5536	31220	31469	41443	41443					0.011941124153509008
REAEALLQL	9	Unmodified	_REAEALLQL_					0	0	0		nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1;nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1;nc|ENSG00000160691|P29353-5|SHC1	nc|ENSG00000160691|P29353-3|SHC1	nc|ENSG00000160691|P29353-3|SHC1	MULTI-MSMS	A375_MHC_IP_R1	1	522.4853515625	2	521.798206	1041.58186	-0.56832	-0.00029655	-0.23946	-0.00012495	-0.80778	-0.0004215	521.7980508608642	76.426	0.65829	76.426	76.117	76.776	0					20	12	2	0	0	0	0.50892	1	27874	27874		19.362	2.249	1	4467800			42512	6433	31221	31470	41444	41444					0.06273127989015848
REAEFTKSI	9	Unmodified	_REAEFTKSI_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	A375_MHC_IP_R1	1	361.2608947753906	3	360.860984	1079.56112	-0.010049	-3.6262E-06	-0.41544	-0.00014992	-0.42549	-0.00015354	360.86081245569574	27.102	0.65405	27.102	26.828	27.482	0					31	12	3	0	0	0	0.026372	1	8152	8152		64.692	21.856	1	36174000			42513	3537	31222	31471	41445	41445					0.024525376093151863
REAEFTKSI	9	Unmodified	_REAEFTKSI_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-SECPEP	A375_MHC_IP_R1	1	541.1874389648438	2	540.787838	1079.56112	-0.7821	-0.00042295	0.17287	9.3488E-05	-0.60922	-0.00032946	540.7878444613181	27.102	0.90566	27.102	26.728	27.634	0					48	17	4	0	0	0	0.011151	1	8149	8149		118.21	59.531	1	85683000			42514	3537	31222	31471	41446	41446					0.024525376093151863
REAEFTKSI	9	Unmodified	_REAEFTKSI_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	A375_MHC_IP_R2	2	361.2608337402344	3	360.860984	1079.56112	-0.57654	-0.00020805	0.16948	6.1158E-05	-0.40706	-0.00014689	360.86099593806705	26.467	0.71207	27.126	26.754	27.466	0.65992					44	13	5	0	0	0	0.0096967	1	8933	8933		93.448	39.979	1	37335000			42515	3537	31222	31471	41447	41447					0.024525376093151863
REAEFTKSI	9	Unmodified	_REAEFTKSI_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-SECPEP	A375_MHC_IP_R2	2	541.1868286132812	2	540.787838	1079.56112	-1.2208	-0.00066018	0.52038	0.00028142	-0.70038	-0.00037876	540.7880159829182	26.474	0.76432	27.133	26.907	27.671	0.65992					41	14	4	0	0	0	0.054506	1	8923	8923		91.085	45.064	1	83609000			42516	3537	31222	31471	41448	41448					0.024525376093151863
REAERLVKY	9	Unmodified	_REAERLVKY_					0	0	0		ENSG00000147123|ENST00000377811|NDUFB11;nc|ENSG00000147123|Q9NX14-2|NDUFB11	ENSG00000147123|ENST00000377811|NDUFB11	ENSG00000147123|ENST00000377811|NDUFB11	MULTI-MSMS	A375_MHC_IP_R1	1	388.9559631347656	3	388.555895	1162.64586	0.39079	0.00015184	0.040597	1.5774E-05	0.43139	0.00016762	388.5558317026323	20.864	0.91789	20.864	20.587	21.505	0					46	17	3	0	0	0	0.26911	2	5476	5476;5558		32.898	8.9336	1	4806300			42517	5660	31223	31472	41449;41450	41449					0.071039081459503
REAERLVKY	9	Unmodified	_REAERLVKY_					0	0	0		ENSG00000147123|ENST00000377811|NDUFB11;nc|ENSG00000147123|Q9NX14-2|NDUFB11	ENSG00000147123|ENST00000377811|NDUFB11	ENSG00000147123|ENST00000377811|NDUFB11	MULTI-MSMS	A375_MHC_IP_R2	2	388.9559326171875	3	388.555895	1162.64586	-0.44007	-0.00017099	0.51302	0.00019934	0.072947	2.8344E-05	388.5559869003567	19.43	1.2626	20.033	19.533	20.796	0.60308					47	24	3	0	0	0	0.30259	1	5984	5984		30.431	6.4673	1	7005200			42518	5660	31223	31472	41451	41451					0.071039081459503
REAESLIAKKI	11	Unmodified	_REAESLIAKKI_					0	0	0		ENSG00000166226|ENST00000299300|CCT2;nc|ENSG00000166226|P78371-2|CCT2;ENST00000550638.5_1_12:69979244-69982049:+|nuORF;ENST00000551620.5_1_12:69979244-69983508:+|nuORF	ENSG00000166226|ENST00000299300|CCT2	ENSG00000166226|ENST00000299300|CCT2	MULTI-MSMS	A375_MHC_IP_R1	1	420.65655517578125	3	419.922355	1256.74524	0.12688	5.3282E-05	-0.2458	-0.00010322	-0.11891	-4.9935E-05	419.9222314550387	28.465	0.45531	28.465	28.188	28.643	0					16	8	3	0	0	0	0.41418	1	8784	8784		37.87	24.335	1	8922300			42519	7044	31224	31473	41452	41452					0.12713306040018324
REAESLIAKKI	11	Unmodified	_REAESLIAKKI_					0	0	0		ENSG00000166226|ENST00000299300|CCT2;nc|ENSG00000166226|P78371-2|CCT2;ENST00000550638.5_1_12:69979244-69982049:+|nuORF;ENST00000551620.5_1_12:69979244-69983508:+|nuORF	ENSG00000166226|ENST00000299300|CCT2	ENSG00000166226|ENST00000299300|CCT2	MULTI-SECPEP	A375_MHC_IP_R2	2	420.3222961425781	3	419.922355	1256.74524	-0.065145	-2.7356E-05	0.027574	1.1579E-05	-0.037571	-1.5777E-05	419.92228735713485	27.654	0.35322	28.332	28.149	28.502	0.67857					13	6	3	0	0	0	0.55677	1	9488	9488		49.269	36.341	1	10419000			42520	7044	31224	31473	41453	41453					0.12713306040018324
REAFLQEVW	9	Unmodified	_REAFLQEVW_					0	0	0		ENSG00000204394|ENST00000375663|VARS1;nc|ENSG00000204394|P26640-2|VARS1	ENSG00000204394|ENST00000375663|VARS1	ENSG00000204394|ENST00000375663|VARS1	MULTI-MSMS	A375_MHC_IP_R2	2	589.7034301757812	2	589.303655	1176.59276	-0.41311	-0.00024345	-0.25266	-0.00014889	-0.66578	-0.00039234	589.3032558176433	93.787	0.50621	94.531	94.211	94.717	0.74474					17	9	3	0	0	0	0.56584	1	35640	35640		16.566	2.6598	1	2249900			42521	9439	31225	31474	41454	41454					0.01152530363265214
REAFLVPAY	9	Unmodified	_REAFLVPAY_					0	0	0		ENSG00000205155|ENST00000587708|PSENEN	ENSG00000205155|ENST00000587708|PSENEN	ENSG00000205155|ENST00000587708|PSENEN	MULTI-SECPEP	A375_MHC_IP_R1	1	533.744384765625	2	533.290017	1064.56548	-0.45661	-0.0002435	0.054145	2.8875E-05	-0.40246	-0.00021463	533.2899532263333	78.745	0.75919	78.745	78.454	79.214	0					30	14	3	0	0	0	0.56537	1	28713	28713		22.736	0.98964	1	9530700			42522	9498	31226	31475	41455	41455					0.03578046822894976
REAFREQRQT	10	Unmodified	_REAFREQRQT_					0	0	0			REV__nc|ENSG00000125503|Q9BZL4-5|PPP1R12C	REV__nc|ENSG00000125503|Q9BZL4-5|PPP1R12C	MULTI-SECPEP	A375_MHC_IP_R2	2	440.28570556640625	3	440.897092	1319.66945	-0.68354	-0.00030137	0.10911	4.8108E-05	-0.57443	-0.00025326	441.2310678648077	22.784	0.30656	23.414	23.265	23.572	0.63015					7	5	2	0	0	0	0.94588	1	7220	7220		1.1098	0.65524	1	449730	+		42523	18346	31227	31476	41456	41456					0.02239721912474124
REAGDEFELRY	11	Unmodified	_REAGDEFELRY_					0	0	0		nc|ENSG00000171552|Q07817-2|BCL2L1;nc|ENSG00000171552|Q07817-3|BCL2L1;ENSG00000171552|ENST00000307677|BCL2L1	nc|ENSG00000171552|Q07817-2|BCL2L1	nc|ENSG00000171552|Q07817-2|BCL2L1	MULTI-SECPEP	A375_MHC_IP_R2	2	462.09979248046875	3	462.221241	1383.64189	-0.78362	-0.00036221	0.099245	4.5873E-05	-0.68438	-0.00031633	462.22129308975576	51.734	0.30502	52.486	52.321	52.626	0.75225					11	5	3	0	0	0	0.99402	1	19510	19510		11.271	10.161	1	1391900			42524	7615	31228	31477	41457	41457					-0.03458226138423015
REAGRIADQF	10	Unmodified	_REAGRIADQF_					0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	MULTI-MSMS	A375_MHC_IP_R1	1	388.6039123535156	3	388.203633	1161.58907	-0.24097	-9.3545E-05	0.32804	0.00012735	0.087073	3.3802E-05	388.2037132098511	29.428	0.25304	29.428	29.302	29.555	0					6	4	2	0	0	0	0.62306	1	9235	9235		19.144	3.6055	1	9556800			42525	866	31229	31478	41458	41458					0.014738605894081047
REAIAQRLV	9	Unmodified	_REAIAQRLV_					0	0	0			REV__EEF2|p.R415Efs*11|1|0.09|ENSG00000167658|chr19:3980617-3980617|G/-|frameshift_variant	REV__EEF2|p.R415Efs*11|1|0.09|ENSG00000167658|chr19:3980617-3980617|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	352.92572021484375	3	352.548852	1054.62473	-0.82193	-0.00028977	-0.085555	-3.0162E-05	-0.90749	-0.00031993	352.54878025610014	28.645	0.3005	29.343	29.183	29.484	0.69872					11	5	3	0	0	0	0.58047	1	9866	9866		10.8	0	1	39655000	+		42526	16062	31230	31479	41459	41459					0.09959942837076596
REALLLLRE	9	Unmodified	_REALLLLRE_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	A375_MHC_IP_R2	2	371.5892028808594	3	371.564391	1111.67134	0.52358	0.00019455	-0.84241	-0.00031301	-0.31883	-0.00011847	371.56416423952044	42.993	0.45421	43.765	43.523	43.977	0.7724					13	8	3	0	0	0	0.7675	1	15914	15914		0.96228	0	1	1047200	+		42527	20249	31231	31480	41460	41460					0.11997382668369028
REAPERPSL	9	Unmodified	_REAPERPSL_					0	0	0		ENST00000489266.5_1_10:123734227-123734680:-|nuORF;nc|ENSG00000107672|Q9NXX6-2|NSMCE4A;ENSG00000107672|ENST00000369023|NSMCE4A	ENST00000489266.5_1_10:123734227-123734680:-|nuORF	ENST00000489266.5_1_10:123734227-123734680:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	527.6639404296875	2	527.78563	1053.55671	-0.82151	-0.00043358	-0.14563	-7.686E-05	-0.96714	-0.00051044	527.7855498091039	23.61	0.35596	23.61	23.432	23.787	0					17	6	4	0	0	0	0.042871	2	6511	6495;6511		67.081	28.905	1	32321000			42528	2749	31232	31481	41461;41462	41462					0.03207073186422349
REAPERPSL	9	Unmodified	_REAPERPSL_					0	0	0		ENST00000489266.5_1_10:123734227-123734680:-|nuORF;nc|ENSG00000107672|Q9NXX6-2|NSMCE4A;ENSG00000107672|ENST00000369023|NSMCE4A	ENST00000489266.5_1_10:123734227-123734680:-|nuORF	ENST00000489266.5_1_10:123734227-123734680:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	528.1849365234375	2	527.78563	1053.55671	-0.83565	-0.00044105	-0.44466	-0.00023468	-1.2803	-0.00067573	527.785437110459	21.358	0.60961	21.977	21.676	22.285	0.61932					26	11	3	0	0	0	0.70759	1	6696	6696		20.581	11.836	1	10454000			42529	2749	31232	31481	41463	41463					0.03207073186422349
REAPILKEF	9	Unmodified	_REAPILKEF_					0	0	0		ACIN1|p.P730Lfs*48|1|0.04|ENSG00000100813|chr14:23078259-23078260|-/ACTAAGCAGTCCTA|frameshift_variant;ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1	ACIN1|p.P730Lfs*48|1|0.04|ENSG00000100813|chr14:23078259-23078260|-/ACTAAGCAGTCCTA|frameshift_variant	ACIN1|p.P730Lfs*48|1|0.04|ENSG00000100813|chr14:23078259-23078260|-/ACTAAGCAGTCCTA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	552.2164916992188	2	551.816399	1101.61824	-0.93431	-0.00051557	0.74097	0.00040888	-0.19333	-0.00010668	551.8167096640991	48.905	0.61082	49.662	49.485	50.096	0.75737					16	11	2	0	0	0	0.67121	1	18388	18388		32.037	9.3012	1	1686500			42530	32	31233	31482	41464	41464					0.07150004885693306
REARERKRRRQ	11	Unmodified	_REARERKRRRQ_					0	0	0		nc|ENSG00000145014|Q2T9K0-4|TMEM44;ENSG00000145014|ENST00000347147|TMEM44;nc|ENSG00000145014|Q2T9K0-7|TMEM44;nc|ENSG00000145014|Q2T9K0-6|TMEM44;nc|ENSG00000145014|Q2T9K0|TMEM44	nc|ENSG00000145014|Q2T9K0-4|TMEM44	nc|ENSG00000145014|Q2T9K0-4|TMEM44	MULTI-MSMS	A375_MHC_IP_R2	2	515.0402221679688	3	514.304967	1539.89307	-0.56959	-0.00029295	1.2125	0.00062361	0.64294	0.00033067	514.3049178741945	142.32	0.8123	142.35	142.03	142.84	0.030731					26	15	3	0	0	0	0.73925	1	55673	55673		0.08335	0	1	2657600			42531	5532	31234	31483	41465	41465					0.144720551372302
REASSQQGLAY	11	Unmodified	_REASSQQGLAY_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;ENST00000393747.3_1_11:70269077-70281851:+|nuORF	nc|ENSG00000085733|Q14247-2|CTTN	nc|ENSG00000085733|Q14247-2|CTTN	MULTI-MSMS	A375_MHC_IP_R1	1	605.6965942382812	2	605.296559	1208.57856	-0.51251	-0.00031022	0.0734	4.4429E-05	-0.43911	-0.00026579	605.2966085383871	27.069	0.35227	27.069	26.928	27.28	0					10	6	2	0	0	0	0.35071	1	8178	8178		42.835	21.298	1	4442700			42532	14491	31235	31484	41466	41466					-0.0173816685564816
REASSQQGLAY	11	Unmodified	_REASSQQGLAY_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;ENST00000393747.3_1_11:70269077-70281851:+|nuORF	nc|ENSG00000085733|Q14247-2|CTTN	nc|ENSG00000085733|Q14247-2|CTTN	MULTI-MSMS	A375_MHC_IP_R2	2	605.6961059570312	2	605.296559	1208.57856	-0.79929	-0.00048381	-0.10156	-6.1471E-05	-0.90085	-0.00054528	605.2964783948853	26.541	0.45784	27.201	27.008	27.466	0.65992					14	8	2	0	0	0	0.53677	1	9035	9035		28.234	15.702	1	3396500			42533	14491	31235	31484	41467	41467					-0.0173816685564816
REATGKITF	9	Unmodified	_REATGKITF_					0	0	0		ENSG00000153140|ENST00000283122|CETN3	ENSG00000153140|ENST00000283122|CETN3	ENSG00000153140|ENST00000283122|CETN3	MULTI-SECPEP	A375_MHC_IP_R1	1	512.1847534179688	2	511.785099	1021.55564	-0.38337	-0.0001962	-0.36646	-0.00018755	-0.74982	-0.00038375	511.78492980476443	28.596	0.65746	28.596	28.339	28.996	0					35	12	5	0	0	0	0.10535	1	8812	8812		75.571	14.213	1	40485000			42534	6010	31236	31485	41468	41468					0.045728588175165896
REATGKITF	9	Unmodified	_REATGKITF_					0	0	0		ENSG00000153140|ENST00000283122|CETN3	ENSG00000153140|ENST00000283122|CETN3	ENSG00000153140|ENST00000283122|CETN3	MULTI-MSMS	A375_MHC_IP_R2	2	512.1847534179688	2	511.785099	1021.55564	-0.7878	-0.00040318	-0.0022044	-1.1282E-06	-0.79	-0.00040431	511.78506322949175	27.842	0.60754	28.521	28.251	28.858	0.67857					30	11	4	0	0	0	0.029287	1	9544	9544		75.571	14.213	1	36723000			42535	6010	31236	31485	41469	41469					0.045728588175165896
REAVSYKNY	9	Unmodified	_REAVSYKNY_					0	0	0		nc|ENSG00000158571|P16118-2|PFKFB1;ENSG00000158571|ENST00000375006|PFKFB1	nc|ENSG00000158571|P16118-2|PFKFB1	nc|ENSG00000158571|P16118-2|PFKFB1	MSMS	A375_MHC_IP_R1	1	565.1690673828125	2	565.285463	1128.55637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.326	1	54.326	53.826	54.826	0								0	0	0	0.15411	1	19388	19388		14.838	0	1				42536	6316	31237	31486	41470	41470					-0.002763465334282955
REAVTHIGRVY	11	Unmodified	_REAVTHIGRVY_					0	0	0		ENSG00000151247|ENST00000450253|EIF4E;nc|ENSG00000151247|P06730-3|EIF4E;nc|ENSG00000151247|P06730-2|EIF4E	ENSG00000151247|ENST00000450253|EIF4E	ENSG00000151247|ENST00000450253|EIF4E	MULTI-MSMS	A375_MHC_IP_R1	1	434.64166259765625	3	434.242199	1299.70477	-0.3214	-0.00013957	-0.58725	-0.00025501	-0.90865	-0.00039458	434.2420061842496	25.689	0.40578	25.689	25.511	25.917	0					18	7	3	0	0	0	0.72829	1	7553	7553		10.527	5.8116	1	4684600			42537	5891	31238	31487	41471	41471					0.06690384440298658
REAVTHIGRVY	11	Unmodified	_REAVTHIGRVY_					0	0	0		ENSG00000151247|ENST00000450253|EIF4E;nc|ENSG00000151247|P06730-3|EIF4E;nc|ENSG00000151247|P06730-2|EIF4E	ENSG00000151247|ENST00000450253|EIF4E	ENSG00000151247|ENST00000450253|EIF4E	MULTI-SECPEP	A375_MHC_IP_R2	2	433.9284362792969	3	434.242199	1299.70477	-0.67174	-0.0002917	-0.60859	-0.00026428	-1.2803	-0.00055597	434.57605342047793	24.898	0.25444	25.542	25.414	25.668	0.64368					9	4	3	0	0	0	0.98407	1	8260	8260		19.615	13.832	1	5477100			42538	5891	31238	31487	41472	41472					0.06690384440298658
RECCCSPCCAS	11	Unmodified	_RECCCSPCCAS_					0	0	0			REV__VWF|p.R2575C|1|0.41|ENSG00000110799|chr12:5969217-5969217|G/A|missense_variant	REV__VWF|p.R2575C|1|0.41|ENSG00000110799|chr12:5969217-5969217|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	581.1644287109375	2	581.184339	1160.35413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.47	1	108.23	107.73	108.73	0.75436								0	0	0	0.16302	1	40602	40602		2.9952	1.6657	1		+		42539	28991	31239	31488	41473	41473					-0.21963723860312712
RECPSVLEY	9	Unmodified	_RECPSVLEY_					0	0	0		nc|ENSG00000135069|Q9Y617-2|PSAT1;ENSG00000135069|ENST00000376588|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	MULTI-MSMS	A375_MHC_IP_R2	2	548.6873168945312	2	548.260599	1094.50665	-0.92061	-0.00050473	0.86021	0.00047162	-0.060399	-3.3115E-05	548.2607419351986	55.026	1.4261	55.777	55.422	56.848	0.75075					38	27	4	0	0	0	0.2487	1	20752	20752		34.402	3.7652	1	3018200			42540	4640	31240	31489	41474	41474					-0.03682797533747362
REDALYAA	8	Unmodified	_REDALYAA_					0	0	0			REV__nc|ENSG00000164889|P04920-2|SLC4A2	REV__nc|ENSG00000164889|P04920-2|SLC4A2	MSMS	A375_MHC_IP_R1	1	454.6849365234375	2	454.727249	907.439946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.8	1	140.8	140.3	141.3	0								0	0	0	0.16876	1	54067	54067		5.2307	0	1		+		42541	20523	31241	31490	41475	41475					-0.017476650333492216
REDECRHL	8	Unmodified	_REDECRHL_					0	0	0			REV__ENSG00000127511|ENST00000248054|SIN3B	REV__ENSG00000127511|ENST00000248054|SIN3B	MULTI-MSMS	A375_MHC_IP_R2	2	529.6434326171875	2	529.245815	1056.47708	-0.40397	-0.0002138	-1.8776	-0.00099373	-2.2816	-0.0012075	529.2442713063393	86.181	0.76547	86.914	86.592	87.357	0.733					34	14	3	0	0	0	0.67331	1	32743	32743		41.84	1.8823	1	4233200	+		42542	18423	31242	31491	41476	41476					-0.048903167592243335
REDECRHL	8	Unmodified	_REDECRHL_					0	0	0			REV__ENSG00000127511|ENST00000248054|SIN3B	REV__ENSG00000127511|ENST00000248054|SIN3B	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	529.245815	1056.47708	-0.69781	-0.00036931	-3.1182	-0.0016503	-3.816	-0.0020196	529.2440868904981	86.88	0.76163	86.88	86.578	87.34	0	-0.01724	-0.00010143	NaN	41.84	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4038400	+		42543	18423	31242	31491							-0.048903167592243335
REDEVRLLKY	10	Unmodified	_REDEVRLLKY_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-SECPEP	A375_MHC_IP_R1	1	441.3138122558594	3	440.91386	1319.71975	0.3117	0.00013743	-0.38163	-0.00016827	-0.069932	-3.0834E-05	440.91362732316037	39.008	0.40668	39.008	38.73	39.136	0					16	7	3	0	0	0	0.92915	1	13308	13308		13.535	13.535	1	3507400			42544	2998	31243	31492	41477	41477					0.0726783151762902
REDEVRLLKY	10	Unmodified	_REDEVRLLKY_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-MATCH	A375_MHC_IP_R2	2		3	440.91386	1319.71975	-0.60256	-0.00026568	0.24544	0.00010822	-0.35712	-0.00015746	440.913806195029	38.114	0.41108	38.889	38.687	39.098	0.77451	-0.05956	0.00050505	NaN	13.535	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2906500			42545	2998	31243	31492							0.0726783151762902
REDGKFWM	8	Unmodified	_REDGKFWM_					0	0	0		CAPN13|p.E312K|1|0.22|ENSG00000162949|chr2:30754297-30754297|C/T|missense_variant	CAPN13|p.E312K|1|0.22|ENSG00000162949|chr2:30754297-30754297|C/T|missense_variant	CAPN13|p.E312K|1|0.22|ENSG00000162949|chr2:30754297-30754297|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	534.6715087890625	2	534.750201	1067.48585	-0.86422	-0.00046214	2.6406	0.0014121	1.7764	0.00094992	534.7524504731421	32.8	0.96713	33.537	32.909	33.876	0.73692					33	18	3	0	0	0	0.77028	1	11490	11490		14.838	0.93222	1	5602900			42546	287	31244	31493	41478	41478					-0.04519343122751707
REDGSFSAF	9	Unmodified	_REDGSFSAF_					0	0	0		nc|ENSG00000156535|Q6YHK3-2|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;ENST00000474094.1_1_6:74502386-74513776:+|nuORF	nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	MULTI-MSMS	A375_MHC_IP_R2	2	508.67974853515625	2	508.227613	1014.44067	-0.94402	-0.00047978	1.2023	0.00061102	0.25824	0.00013124	508.22840674088104	51.476	0.40578	52.228	51.966	52.372	0.75225					11	7	2	0	0	0	0.55471	1	19350	19350		17.113	1.2657	1	1867700			42547	6199	31245	31494	41479	41479					-0.06596870384282738
REDGSFSFY	9	Unmodified	_REDGSFSFY_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;NOMO1|p.Q465Kfs*4|1|0.07|ENSG00000103512|chr16:14863184-14863185|-/AAGAC|frameshift_variant;NOMO2|p.S283F|1|0.67|ENSG00000185164|chr16:18542619-18542619|G/A|missense_variant	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	A375_MHC_IP_R1	1	554.6401977539062	2	554.240721	1106.46689	-0.92483	-0.00051258	0.31745	0.00017594	-0.60739	-0.00033664	554.2408739573591	67.683	1.0145	67.683	67.245	68.26	0					59	19	4	0	0	0	0.10622	2	24462	24462;24682		49.554	26.406	1	26838000			42548	2432	31246	31495	41480;41481	41480					-0.08208601212800204
REDGSFSFY	9	Unmodified	_REDGSFSFY_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;NOMO1|p.Q465Kfs*4|1|0.07|ENSG00000103512|chr16:14863184-14863185|-/AAGAC|frameshift_variant;NOMO2|p.S283F|1|0.67|ENSG00000185164|chr16:18542619-18542619|G/A|missense_variant	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	A375_MHC_IP_R2	2	554.1969604492188	2	554.240721	1106.46689	-0.83377	-0.00046211	-0.052354	-2.9017E-05	-0.88612	-0.00049113	554.2406884324963	66.989	0.96582	67.726	67.24	68.205	0.73631					55	18	4	0	0	0	0.12748	2	25433	25296;25433		45.74	20.341	1	26250000			42549	2432	31246	31495	41482;41483	41483					-0.08208601212800204
REDKIFQKF	9	Unmodified	_REDKIFQKF_					0	0	0		nc|ENSG00000071994|Q16342-3|PDCD2;ENSG00000071994|ENST00000541970|PDCD2;ENST00000437852.2_1_9:116613102-116613318:-|nuORF	nc|ENSG00000071994|Q16342-3|PDCD2	nc|ENSG00000071994|Q16342-3|PDCD2	MULTI-MSMS	A375_MHC_IP_R1	1	404.6239929199219	3	404.224146	1209.65061	-0.3869	-0.0001564	0.50569	0.00020441	0.11879	4.8018E-05	404.2243110146816	35.022	0.55949	35.022	34.759	35.319	0					28	10	4	0	0	0	0.013192	2	11591	11535;11591		92.201	21.705	1	17492000			42550	1524	31247	31496	41484;41485	41485					0.054167922887017994
REDKIFQKF	9	Unmodified	_REDKIFQKF_					0	0	0		nc|ENSG00000071994|Q16342-3|PDCD2;ENSG00000071994|ENST00000541970|PDCD2;ENST00000437852.2_1_9:116613102-116613318:-|nuORF	nc|ENSG00000071994|Q16342-3|PDCD2	nc|ENSG00000071994|Q16342-3|PDCD2	MULTI-MSMS	A375_MHC_IP_R2	2	404.6238098144531	3	404.224146	1209.65061	-0.38455	-0.00015544	-0.11544	-4.6664E-05	-0.49999	-0.00020211	404.22403310686184	34.119	0.56038	34.871	34.6	35.16	0.75225					28	10	4	0	0	0	0.013192	2	12240	12240;12290		92.201	19.925	1	24331000			42551	1524	31247	31496	41486;41487	41486					0.054167922887017994
REDNVIRKY	9	Unmodified	_REDNVIRKY_					0	0	0		nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;ITGA6|p.F99Lfs*31|1|0.34|ENSG00000091409|chr2:172465651-172465651|T/-|frameshift_variant	nc|ENSG00000091409|P23229-4|ITGA6	nc|ENSG00000091409|P23229-4|ITGA6	MULTI-SECPEP	A375_MHC_IP_R1	1	398.6193542480469	3	398.219283	1191.63602	-0.36109	-0.00014379	0.53404	0.00021266	0.17295	6.8872E-05	398.2194766003315	19.291	0.54602	19.291	19.23	19.776	0					30	10	4	0	0	0	0.18869	1	4727	4727		62.869	48.463	1	313790000			42552	14499	31248	31497	41488	41488					0.047867201405551896
REDNVIRKY	9	Unmodified	_REDNVIRKY_					0	0	0		nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;ITGA6|p.F99Lfs*31|1|0.34|ENSG00000091409|chr2:172465651-172465651|T/-|frameshift_variant	nc|ENSG00000091409|P23229-4|ITGA6	nc|ENSG00000091409|P23229-4|ITGA6	MULTI-MSMS	A375_MHC_IP_R2	2	398.619384765625	3	398.219283	1191.63602	-0.34597	-0.00013777	-0.28544	-0.00011367	-0.6314	-0.00025144	398.2191384190092	18.855	0.36019	19.458	19.423	19.783	0.60308					25	8	4	0	0	0	0.25114	1	5641	5641		34.222	20.703	1	306860000			42553	14499	31248	31497	41489	41489					0.047867201405551896
REDNVIRKY	9	Unmodified	_REDNVIRKY_					0	0	0		nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;ITGA6|p.F99Lfs*31|1|0.34|ENSG00000091409|chr2:172465651-172465651|T/-|frameshift_variant	nc|ENSG00000091409|P23229-4|ITGA6	nc|ENSG00000091409|P23229-4|ITGA6	MULTI-MSMS	A375_MHC_IP_R2	2	398.6191101074219	3	398.219283	1191.63602	-0.41032	-0.0001634	0.44067	0.00017548	0.030348	1.2085E-05	398.2193982601929	20.524	0.65881	21.134	20.958	21.616	0.61029					19	12	3	0	0	0	0.23949	1	6423	6423		35.08	25.315	1	2543100			42554	14499	31248	31497	41490	41490					0.047867201405551896
REDPTFKVY	9	Unmodified	_REDPTFKVY_					0	0	0		nc|ENSG00000168827|Q96RP9-2|GFM1;ENSG00000168827|ENST00000486715|GFM1	nc|ENSG00000168827|Q96RP9-2|GFM1	nc|ENSG00000168827|Q96RP9-2|GFM1	MULTI-SECPEP	A375_MHC_IP_R2	2	578.1951904296875	2	577.795663	1153.57677	-0.35512	-0.00020519	0.17804	0.00010287	-0.17708	-0.00010231	577.795890917032	39.143	0.96912	39.917	39.351	40.32	0.77451					22	18	2	0	0	0	0.46121	1	14446	14446		38.615	38.615	1	3674700			42555	14757	31249	31498	41491	41491					0.006128241263922973
REEAQLEY	8	Unmodified	_REEAQLEY_					0	0	0			REV__CSMD3|p.G1562A|1|0.24|ENSG00000164796|chr8:112517105-112517105|C/G|missense_variant	REV__CSMD3|p.G1562A|1|0.24|ENSG00000164796|chr8:112517105-112517105|C/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	519.6845703125	2	519.248546	1036.48254	-0.33485	-0.00017387	-0.64716	-0.00033604	-0.98202	-0.00050991	519.2482481331949	54.188	1.3172	54.188	53.453	54.771	0					49	25	4	0	0	0	0.77603	1	19484	19484		9.3474	0	1	13951000	+		42556	15923	31250	31499	41492	41492					-0.03424314695780595
REEAQLEY	8	Unmodified	_REEAQLEY_					0	0	0			REV__CSMD3|p.G1562A|1|0.24|ENSG00000164796|chr8:112517105-112517105|C/G|missense_variant	REV__CSMD3|p.G1562A|1|0.24|ENSG00000164796|chr8:112517105-112517105|C/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	519.6843872070312	2	519.248546	1036.48254	-1.2225	-0.0006348	0.076716	3.9835E-05	-1.1458	-0.00059496	519.2485948888565	53.472	1.0723	54.223	53.588	54.661	0.75105					39	20	3	0	0	0	0.77603	1	20290	20290		9.3474	0	1	16072000	+		42557	15923	31250	31499	41493	41493					-0.03424314695780595
REEASDDDMEG	11	Unmodified	_REEASDDDMEG_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;nc|ENSG00000144028|O75643-2|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MSMS	A375_MHC_IP_R1	1	627.2595825195312	2	627.232964	1252.45137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.17	1	130.17	129.67	130.67	0								0	0	0	0.16213	1	50078	50078		7.609	4.0125	1				42558	5456	31251	31500	41494	41494					-0.1647530058285156
REEEAARLF	9	Unmodified	_REEEAARLF_					0	0	0		ENSG00000071575|ENST00000155926|TRIB2;nc|ENSG00000173334|Q96RU8-2|TRIB1;ENSG00000173334|ENST00000311922|TRIB1	ENSG00000071575|ENST00000155926|TRIB2;nc|ENSG00000173334|Q96RU8-2|TRIB1	ENSG00000071575|ENST00000155926|TRIB2	MULTI-MSMS	A375_MHC_IP_R1	1	561.1900024414062	2	560.790912	1119.56727	-0.75953	-0.00042594	0.15486	8.6844E-05	-0.60467	-0.00033909	560.7910529768176	38.073	0.45641	38.073	37.812	38.268	0					25	8	4	0	0	0	0.26911	1	12864	12864		32.898	13.641	1	8411000			42559	1515;7789	31252	31501	41495	41495					0.012270558408545185
REEEAARLF	9	Unmodified	_REEEAARLF_					0	0	0		ENSG00000071575|ENST00000155926|TRIB2;nc|ENSG00000173334|Q96RU8-2|TRIB1;ENSG00000173334|ENST00000311922|TRIB1	ENSG00000071575|ENST00000155926|TRIB2;nc|ENSG00000173334|Q96RU8-2|TRIB1	ENSG00000071575|ENST00000155926|TRIB2	MULTI-SECPEP	A375_MHC_IP_R2	2	561.1907348632812	2	560.790912	1119.56727	-1.238	-0.00069426	0.28714	0.00016103	-0.95087	-0.00053324	560.7911713827543	37.121	0.4553	37.892	37.665	38.12	0.7709					19	8	3	0	0	0	0.41731	1	13564	13564		42.312	13.826	1	6606100			42560	1515;7789	31252	31501	41496	41496					0.012270558408545185
REEEAARLFY	10	Unmodified	_REEEAARLFY_					0	0	0		ENSG00000071575|ENST00000155926|TRIB2	ENSG00000071575|ENST00000155926|TRIB2	ENSG00000071575|ENST00000155926|TRIB2	MULTI-SECPEP	A375_MHC_IP_R2	2	428.6685791015625	3	428.55081	1282.6306	-0.021174	-9.074E-06	-0.28269	-0.00012115	-0.30387	-0.00013022	428.55060747485385	47.337	0.61131	48.099	47.664	48.275	0.76128					20	11	3	0	0	0	0.78227	1	17722	17722		32.518	26.735	1	2308100			42561	1515	31253	31502	41497	41497					0.0005899655809571414
REEELKRQR	9	Unmodified	_REEELKRQR_					0	0	0		nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2	MULTI-MSMS	A375_MHC_IP_R2	2	415.63409423828125	3	415.233704	1242.67928	-0.030608	-1.2709E-05	0.033055	1.3726E-05	0.0024474	1.0162E-06	415.2336792102014	130.13	0.81082	130.35	129.89	130.7	0.21419					24	15	2	0	0	0	0.69884	1	51130	51130		7.1017	2.2047	1	4237400			42562	14698	31254	31503	41498	41498					0.06764909917842488
REEELQWRWKQ	11	Unmodified	_REEELQWRWKQ_					0	0	0			REV__ENSG00000159450|ENST00000614923|TCHH	REV__ENSG00000159450|ENST00000614923|TCHH	MULTI-MSMS	A375_MHC_IP_R1	1	794.8040161132812	2	794.404963	1586.79537	-0.33389	-0.00026524	-0.68846	-0.00054692	-1.0224	-0.00081216	794.4042322513808	54.541	0.35661	54.541	54.314	54.67	0					10	6	2	0	0	0	0.73378	1	19509	19509		5.2969	0	1	3053900	+		42563	20121	31255	31504	41499	41499					0.025448086978713036
REEESQRLSW	10	Unmodified	_REEESQRLSW_					0	0	0		ENSG00000110274|ENST00000278935|CEP164;nc|ENSG00000110274|Q9UPV0-2|CEP164;ENST00000533223.1_1_11:117257895-117280842:+|nuORF	ENSG00000110274|ENST00000278935|CEP164	ENSG00000110274|ENST00000278935|CEP164	MULTI-SECPEP	A375_MHC_IP_R1	1	440.6687927246094	3	440.549469	1318.62658	-0.30607	-0.00013484	0.20321	8.9526E-05	-0.10285	-4.5313E-05	440.5495117242005	32.912	0.25367	32.912	32.684	32.938	0					7	4	2	0	0	0	0.88361	1	10631	10631		18.34	6.1121	1	1662100			42564	2926	31256	31505	41500	41500					-0.019990929356026754
REEESQRLSW	10	Unmodified	_REEESQRLSW_					0	0	0		ENSG00000110274|ENST00000278935|CEP164;nc|ENSG00000110274|Q9UPV0-2|CEP164;ENST00000533223.1_1_11:117257895-117280842:+|nuORF	ENSG00000110274|ENST00000278935|CEP164	ENSG00000110274|ENST00000278935|CEP164	MULTI-MATCH	A375_MHC_IP_R2	2		3	440.549469	1318.62658	-0.34043	-0.00014998	0.28998	0.00012775	-0.050452	-2.2227E-05	440.5498060560373	32.146	0.20435	32.882	32.704	32.909	0.73692	-0.014796	6.7265E-05	NaN	18.34	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1170500			42565	2926	31256	31505							-0.019990929356026754
REEGTPLTL	9	Unmodified	_REEGTPLTL_					0	0	0		ENST00000477976.5_1_1:880076-889593:-|nuORF;ENST00000483767.5_1_1:880076-882054:-|nuORF;ENSG00000188976|ENST00000327044|NOC2L	ENST00000477976.5_1_1:880076-889593:-|nuORF;ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	MULTI-MSMS	A375_MHC_IP_R2	2	508.2310791015625	2	508.274564	1014.53457	-0.91586	-0.00046551	0.80357	0.00040843	-0.11229	-5.7075E-05	508.27495821113325	50.347	0.60798	51.101	50.753	51.361	0.75406					20	11	2	0	0	0	0.094655	1	18929	18929		51.63	3.8811	1	27381000			42566	12454;8948	31257	31506	41501	41501					0.027888487179893673
REEHIDKVF	9	Unmodified	_REEHIDKVF_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA;nc|ENSG00000086712|Q9NUQ3-2|TXLNG;ENSG00000086712|ENST00000380122|TXLNG	ENSG00000084652|ENST00000373610|TXLNA;nc|ENSG00000086712|Q9NUQ3-2|TXLNG	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	A375_MHC_IP_R1	1	391.9403991699219	3	391.540134	1171.59857	0.013063	5.1147E-06	0.21973	8.6034E-05	0.2328	9.1149E-05	391.54021775839936	27.639	0.65606	27.639	27.432	28.088	0					20	12	2	0	0	0	0.032776	1	8408	8408		72.59	33.377	1	12959000			42567	1798;1844	31258	31507	41502	41502					0.019636288749325104
REEHIDKVF	9	Unmodified	_REEHIDKVF_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA;nc|ENSG00000086712|Q9NUQ3-2|TXLNG;ENSG00000086712|ENST00000380122|TXLNG	ENSG00000084652|ENST00000373610|TXLNA;nc|ENSG00000086712|Q9NUQ3-2|TXLNG	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	A375_MHC_IP_R2	2	391.9403991699219	3	391.540134	1171.59857	-0.33891	-0.0001327	0.60675	0.00023757	0.26784	0.00010487	391.54034396966193	26.934	0.46202	27.594	27.414	27.876	0.65992					16	8	2	0	0	0	0.018959	1	9156	9156		84.738	34.996	1	16312000			42568	1798;1844	31258	31507	41503	41503					0.019636288749325104
REEIAQLARQY	11	Unmodified	_REEIAQLARQY_					0	0	0		ENST00000378892.5_1_9:34637493-34637721:-|nuORF;nc|ENSG00000147955|Q99720-4|SIGMAR1;ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-3|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	460.3150634765625	3	459.58088	1375.72081	-0.31481	-0.00014468	-0.43163	-0.00019837	-0.74644	-0.00034305	459.5806744036521	42.805	0.45622	43.577	43.369	43.826	0.7724					14	8	2	0	0	0	0.95659	1	15961	15961		23.34	19.494	1	2704600			42569	5713	31259	31508	41504	41504					0.04798045886514046
REEKTLEERRW	11	Unmodified	_REEKTLEERRW_					0	0	0		ENSG00000268350|ENST00000622447|FAM156A;ENSG00000179304|ENST00000416841|FAM156B	ENSG00000268350|ENST00000622447|FAM156A	ENSG00000268350|ENST00000622447|FAM156A	MULTI-MSMS	A375_MHC_IP_R2	2	383.9641418457031	4	383.704849	1530.79029	-0.37742	-0.00014482	0.080534	3.0901E-05	-0.29688	-0.00011391	383.7048155645023	19.005	0.19974	19.608	19.533	19.733	0.60308					5	3	2	0	0	0	0.73732	1	5745	5745		1.9275	1.4215	1	3120800			42570	8220	31260	31509	41505	41505					0.04612504835267828
REEKYALLF	9	Unmodified	_REEKYALLF_					0	0	0			REV__ENSG00000177084|ENST00000320574|POLE	REV__ENSG00000177084|ENST00000320574|POLE	MULTI-MSMS	A375_MHC_IP_R1	1	390.6170654296875	3	390.21688	1167.62881	0.014136	5.516E-06	0.2518	9.8255E-05	0.26593	0.00010377	390.2170204226615	53.123	0.55695	53.123	52.897	53.453	0					23	10	3	0	0	0	0.52905	1	18918	18918		18.373	0	1	4175700	+		42571	21436	31261	31510	41506	41506					0.05169987540125476
REENFRDRGF	10	Unmodified	_REENFRDRGF_					0	0	0		ENST00000469451.1_1_1:203830997-203832824:+|nuORF	ENST00000469451.1_1_1:203830997-203832824:+|nuORF	ENST00000469451.1_1_1:203830997-203832824:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	442.9496154785156	3	442.549692	1324.62725	-0.3606	-0.00015958	0.04615	2.0424E-05	-0.31445	-0.00013916	442.5496744639052	23.457	0.66214	23.457	23.278	23.94	0					22	12	2	0	0	0	0.16899	1	6453	6453		75.941	45.586	1	26769000			42572	12318	31262	31511	41507	41507					-0.022082534959281475
REENFRDRGF	10	Unmodified	_REENFRDRGF_					0	0	0		ENST00000469451.1_1_1:203830997-203832824:+|nuORF	ENST00000469451.1_1_1:203830997-203832824:+|nuORF	ENST00000469451.1_1_1:203830997-203832824:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	442.9492492675781	3	442.549692	1324.62725	-0.68837	-0.00030464	-0.059773	-2.6453E-05	-0.74814	-0.00033109	442.54962773051426	21.256	0.65873	21.876	21.422	22.081	0.61932					31	12	4	0	0	0	0.46293	1	6628	6628		30.414	17.485	1	9028000			42573	12318	31262	31511	41508	41508					-0.022082534959281475
REENFRDRGF	10	Unmodified	_REENFRDRGF_					0	0	0		ENST00000469451.1_1_1:203830997-203832824:+|nuORF	ENST00000469451.1_1_1:203830997-203832824:+|nuORF	ENST00000469451.1_1_1:203830997-203832824:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	442.94903564453125	3	442.549692	1324.62725	-0.66633	-0.00029489	-0.13476	-5.9639E-05	-0.8011	-0.00035452	442.5496435368148	23.324	0.20187	23.954	23.828	24.029	0.63014					8	3	3	0	0	0	0.71654	1	7506	7506		4.8923	1.0464	1	4161000			42574	12318	31262	31511	41509	41509					-0.022082534959281475
REEPDMESY	9	Unmodified	_REEPDMESY_					0	0	0			REV__ENSG00000148408|ENST00000371372|CACNA1B	REV__ENSG00000148408|ENST00000371372|CACNA1B	MULTI-MSMS	A375_MHC_IP_R1	1	578.6345825195312	2	578.234778	1154.455	-0.04092	-2.3662E-05	-0.041871	-2.4211E-05	-0.082791	-4.7873E-05	578.2346549265079	51.599	0.81082	51.599	51.068	51.879	0					25	15	2	0	0	0	0.61998	1	18337	18337		13.906	3.1065	1	2213800	+		42575	19630	31263	31512	41510	41510					-0.11604586018302143
REEPDMESY	9	Unmodified	_REEPDMESY_					0	0	0			REV__ENSG00000148408|ENST00000371372|CACNA1B	REV__ENSG00000148408|ENST00000371372|CACNA1B	MULTI-MSMS	A375_MHC_IP_R2	2	578.6340942382812	2	578.234778	1154.455	-0.30842	-0.00017834	-0.79281	-0.00045843	-1.1012	-0.00063677	578.2344004475713	50.983	0.7582	51.737	51.412	52.17	0.75406					22	14	2	0	0	0	0.51106	1	19167	19167		19.257	4.0085	1	2098600	+		42576	19630	31263	31512	41511	41511					-0.11604586018302143
REEPDMESY	9	Unmodified	_REEPDMESY_					0	0	0			REV__ENSG00000148408|ENST00000371372|CACNA1B	REV__ENSG00000148408|ENST00000371372|CACNA1B	MULTI-SECPEP	A375_MHC_IP_R2	2	577.6563720703125	2	578.234778	1154.455	-0.30842	-0.00017834	-0.79281	-0.00045843	-1.1012	-0.00063677	578.2344004475713	50.983	0.7582	51.737	51.412	52.17	0.75406					22	14	2	0	0	0	0.77396	1	19177	19177		6.2058	3.7073	1	2098600	+		42577	19630	31263	31512	41512	41512					-0.11604586018302143
REEPQDIYW	9	Unmodified	_REEPQDIYW_					0	0	0		ENSG00000130177|ENST00000356221|CDC16;ENST00000494766.5_1_13:115000559-115007787:+|nuORF	ENSG00000130177|ENST00000356221|CDC16	ENSG00000130177|ENST00000356221|CDC16	MULTI-SECPEP	A375_MHC_IP_R2	2	618.1605224609375	2	618.288202	1234.56185	-0.60127	-0.00037176	0.30706	0.00018985	-0.29422	-0.00018191	618.2882453313563	64.024	0.96632	64.764	64.394	65.361	0.74022					28	18	2	0	0	0	0.76452	1	24223	24223		12.241	8.6442	1	1672400			42578	4228	31264	31513	41513	41513					-0.04604667741614321
REEQSGYY	8	Unmodified	_REEQSGYY_					0	0	0			REV__nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	REV__nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MULTI-MSMS	A375_MHC_IP_R1	1	516.1275634765625	2	516.225071	1030.43559	-0.5446	-0.00028113	0.5058	0.00026111	-0.038796	-2.0028E-05	516.2253911759398	50.335	0.71592	50.335	49.947	50.663	0					24	12	3	0	0	0	0.77643	1	17885	17885		7.9102	1.5561	1	2713200	+		42579	20339	31265	31514	41514	41514					-0.07841174246891569
REEREQWEQRQ	11	Unmodified	_REEREQWEQRQ_					0	0	0			REV__ENSG00000159450|ENST00000614923|TCHH	REV__ENSG00000159450|ENST00000614923|TCHH	MULTI-SECPEP	A375_MHC_IP_R1	1	524.69677734375	3	525.253715	1572.73932	-0.53198	-0.00027942	-0.22183	-0.00011652	-0.7538	-0.00039594	525.2536748317133	19.829	0.40828	19.829	19.571	19.98	0					15	7	3	0	0	0	1.0002	1	5008	5008		0.45452	0.37117	1	1985800	+		42580	20121	31266	31515	41515	41515					-0.024144442095803242
REEVRFGGKKT	11	Unmodified	_REEVRFGGKKT_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MSMS	A375_MHC_IP_R1	1	653.8662719726562	2	653.864943	1305.71533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.13	1	119.13	118.63	119.63	0								0	0	0	0.16265	1	43983	43983		4.897	0.36815	1				42581	3201	31267	31516	41516	41516					0.07470367094697394
REFCRRRRNIW	11	Unmodified	_REFCRRRRNIW_					0	0	0		ENST00000476474.5_1_19:12098553-12146369:+|nuORF;ENST00000489336.5_1_19:12098553-12114231:+|nuORF;ENST00000406892.6_1_19:12098553-12137060:+|nuORF;ENST00000495324.5_1_19:12098553-12129101:+|nuORF	ENST00000476474.5_1_19:12098553-12146369:+|nuORF	ENST00000476474.5_1_19:12098553-12146369:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	531.687744140625	3	531.288148	1590.84262	-0.67765	-0.00036003	-0.96335	-0.00051182	-1.641	-0.00087185	531.2876490057998	58.756	0.40701	58.756	58.531	58.938	0					16	7	3	0	0	0	1.0015	1	21123	21123		0.094841	0.094841	1	2207100			42582	11604	31268	31517	41517	41517					0.07082809487906161
REFCWDAY	8	Unmodified	_REFCWDAY_					0	0	0		ENST00000484073.1_1_2:63791725-63815411:-|nuORF;nc|ENSG00000143951|O95876-2|WDPCP;ENST00000409835.5_1_2:63587012-63815411:-|nuORF;ENSG00000143951|ENST00000272321|WDPCP	ENST00000484073.1_1_2:63791725-63815411:-|nuORF	ENST00000484073.1_1_2:63791725-63815411:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	363.63702392578125	3	363.820132	1088.43857	0.13764	5.0076E-05	0.51363	0.00018687	0.65127	0.00023694	363.8202574603926	46.836	0.40545	47.597	47.412	47.817	0.76128					11	7	2	0	0	0	0.972	1	17595	17595		0.40072	0.40072	1	1399300			42583	5449	31269	31518	41518	41518					-0.10211622393740072
REFDFFNKI	9	Unmodified	_REFDFFNKI_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000290425|Q8N8J0|PI4KAP1;ENST00000466772.5_1_22:21065465-21081626:-|nuORF;ENST00000492581.5_1_22:21067427-21075805:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	A375_MHC_IP_R1	1	608.7109375	2	608.31148	1214.60841	-0.38492	-0.00023415	0.14346	8.7267E-05	-0.24146	-0.00014688	608.3114357057013	83.584	0.60848	83.584	83.329	83.937	0					25	11	3	0	0	0	0.41439	1	30579	30579		55.235	9.2137	1	7449300			42584	9791	31270	31519	41519	41519					0.009688168803450026
REFDFFNKI	9	Unmodified	_REFDFFNKI_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000290425|Q8N8J0|PI4KAP1;ENST00000466772.5_1_22:21065465-21081626:-|nuORF;ENST00000492581.5_1_22:21067427-21075805:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	A375_MHC_IP_R2	2	608.3514404296875	2	608.31148	1214.60841	-0.43761	-0.00026621	-0.31133	-0.00018938	-0.74894	-0.00045559	608.3113897226425	82.779	0.55464	83.522	83.246	83.8	0.74293					22	10	3	0	0	0	0.1915	1	31463	31463		38.615	6.3093	1	6913100			42585	9791	31270	31519	41520	41520					0.009688168803450026
REFDSDSLRHY	11	Unmodified	_REFDSDSLRHY_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-7|ANK3	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	A375_MHC_IP_R1	1	475.1665344238281	3	475.556623	1423.64804	-0.99392	-0.00047266	0.18181	8.6462E-05	-0.8121	-0.0003862	475.89096258127654	29.277	0.35523	29.277	29.098	29.453	0					11	6	2	0	0	0	0.79143	1	9125	9125		34.683	27.646	1	5027500			42586	5883	31271	31520	41521	41521					-0.0468370790690642
REFDSDSLRHY	11	Unmodified	_REFDSDSLRHY_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-7|ANK3	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	A375_MHC_IP_R2	2	475.166259765625	3	475.556623	1423.64804	-1.0447	-0.00049681	-0.20852	-9.9162E-05	-1.2532	-0.00059597	475.5564672853614	28.544	0.20303	29.237	29.074	29.277	0.69241					7	3	3	0	0	0	0.91328	1	9885	9885		28.46	23.262	1	6077100			42587	5883	31271	31520	41522	41522					-0.0468370790690642
REFEERRSL	9	Unmodified	_REFEERRSL_					0	0	0		nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A;ENST00000498179.1_1_X:129054707-129055571:+|nuORF	nc|ENSG00000156697|Q9BVJ6-3|UTP14A	nc|ENSG00000156697|Q9BVJ6-3|UTP14A	MULTI-MSMS	A375_MHC_IP_R1	1	408.28253173828125	3	407.882671	1220.62618	-0.23943	-9.7657E-05	0.49269	0.00020096	0.25327	0.0001033	407.88277296426185	19.817	0.55912	19.817	19.471	20.03	0					24	10	3	0	0	0	0.51336	1	5055	5055		19.144	9.3797	1	6395100			42588	6206	31272	31521	41523	41523					0.024695321352055544
REFEPLLKP	9	Unmodified	_REFEPLLKP_					0	0	0		ENSG00000197355|ENST00000409858|UAP1L1;nc|ENSG00000197355|Q3KQV9-2|UAP1L1	ENSG00000197355|ENST00000409858|UAP1L1	ENSG00000197355|ENST00000409858|UAP1L1	MULTI-MSMS	A375_MHC_IP_R2	2	377.2851257324219	3	376.885241	1127.63389	-0.10253	-3.8641E-05	-0.31655	-0.0001193	-0.41908	-0.00015794	376.8851241575582	61.114	0.60496	61.859	61.618	62.223	0.74503					24	11	3	0	0	0	0.44024	1	23158	23158		16.566	6.4153	1	4325700			42589	9148	31273	31522	41524	41524					0.07518291402743671
REFFERERLEE	11	Unmodified	_REFFERERLEE_					0	0	0			REV__SPTY2D1|p.L208F|1|0.19|ENSG00000179119|chr11:18615652-18615652|G/A|missense_variant	REV__SPTY2D1|p.L208F|1|0.19|ENSG00000179119|chr11:18615652-18615652|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	770.8248291015625	2	770.381154	1538.74776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.48	1	144.5	144	145	0.024414								0	0	0	0.1636	1	56434	56434		0	0	1		+		42590	28043	31274	31523	41525	41525					-6.890292934258468E-05
REFFESNIKSY	11	Unmodified	_REFFESNIKSY_					0	0	0		nc|ENSG00000108219|Q8NG11-2|TSPAN14;ENSG00000108219|ENST00000429989|TSPAN14	nc|ENSG00000108219|Q8NG11-2|TSPAN14	nc|ENSG00000108219|Q8NG11-2|TSPAN14	MULTI-MSMS	A375_MHC_IP_R1	1	710.7482299804688	2	710.348791	1418.68303	-0.55456	-0.00039393	0.44624	0.00031699	-0.10832	-7.6946E-05	710.8507073018395	50.897	0.45522	50.897	50.663	51.119	0					21	8	4	0	0	0	0.14673	1	18056	18056		80.24	55.249	1	4682000			42591	2787	31275	31524	41526	41526					-0.00956465098965964
REFFESNIKSY	11	Unmodified	_REFFESNIKSY_					0	0	0		nc|ENSG00000108219|Q8NG11-2|TSPAN14;ENSG00000108219|ENST00000429989|TSPAN14	nc|ENSG00000108219|Q8NG11-2|TSPAN14	nc|ENSG00000108219|Q8NG11-2|TSPAN14	MULTI-SECPEP	A375_MHC_IP_R1	1	473.65936279296875	3	473.90162	1418.68303	-0.43684	-0.00020702	0.052331	2.48E-05	-0.38451	-0.00018222	473.90182447048966	50.89	0.75964	50.89	50.459	51.219	0					29	14	3	0	0	0	0.41427	1	18083	18083		55.467	53.214	1	8371000			42592	2787	31275	31524	41527	41527					-0.00956465098965964
REFFESNIKSY	11	Unmodified	_REFFESNIKSY_					0	0	0		nc|ENSG00000108219|Q8NG11-2|TSPAN14;ENSG00000108219|ENST00000429989|TSPAN14	nc|ENSG00000108219|Q8NG11-2|TSPAN14	nc|ENSG00000108219|Q8NG11-2|TSPAN14	MULTI-MSMS	A375_MHC_IP_R2	2	710.7485961914062	2	710.348791	1418.68303	-0.93657	-0.00066529	0.094456	6.7097E-05	-0.84211	-0.00059819	710.3491395094646	50.21	0.45643	50.964	50.702	51.159	0.75406					20	8	3	0	0	0	0.087359	1	18898	18898		76.416	58.973	1	3754700			42593	2787	31275	31524	41528	41528					-0.00956465098965964
REFFESNIKSY	11	Unmodified	_REFFESNIKSY_					0	0	0		nc|ENSG00000108219|Q8NG11-2|TSPAN14;ENSG00000108219|ENST00000429989|TSPAN14	nc|ENSG00000108219|Q8NG11-2|TSPAN14	nc|ENSG00000108219|Q8NG11-2|TSPAN14	MULTI-MSMS	A375_MHC_IP_R2	2	474.15460205078125	3	473.90162	1418.68303	-0.75303	-0.00035686	-0.23346	-0.00011064	-0.98649	-0.0004675	473.90167359747585	50.201	0.81372	50.955	50.497	51.311	0.75406					37	15	5	0	0	0	0.72313	1	18918	18918		13.756	7.1321	1	5439800			42594	2787	31275	31524	41529	41529					-0.00956465098965964
REFFPNHQW	9	Unmodified	_REFFPNHQW_					0	0	0		ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	MULTI-MSMS	A375_MHC_IP_R1	1	631.1990966796875	2	630.799072	1259.58359	-0.7949	-0.00050142	0.84372	0.00053222	0.048822	3.0797E-05	630.799578985416	53.054	0.45425	53.054	52.796	53.25	0					12	8	2	0	0	0	0.59859	1	18944	18944		20.415	11.031	1	1419500			42595	9034	31276	31525	41530	41530					-0.03581818202383147
REFFPNHQW	9	Unmodified	_REFFPNHQW_					0	0	0		ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	MULTI-SECPEP	A375_MHC_IP_R2	2	421.3187255859375	3	420.868473	1259.58359	-0.48146	-0.00020263	0.24526	0.00010322	-0.23619	-9.9406E-05	420.8685229911665	52.292	0.40567	53.044	52.729	53.134	0.75225					10	7	2	0	0	0	0.76642	1	19658	19658		8.9762	7.9048	1	1961300			42596	9034	31276	31525	41531	41531					-0.03581818202383147
REFFPNHQW	9	Unmodified	_REFFPNHQW_					0	0	0		ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	MULTI-MATCH	A375_MHC_IP_R2	2		2	630.799072	1259.58359	-1.1991	-0.0007564	1.3528	0.00085334	0.15367	9.6932E-05	631.3016261143658	52.282	0.30216	53.034	52.882	53.184	0.75225	-0.0098872	0.00035733	NaN	20.415	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1399000			42597	9034	31276	31525							-0.03581818202383147
REFGSVDYW	9	Unmodified	_REFGSVDYW_					0	0	0		nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;ENSG00000010165|ENST00000361735|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	MULTI-SECPEP	A375_MHC_IP_R1	1	580.164306640625	2	579.764363	1157.51417	-0.23234	-0.0001347	0.033762	1.9574E-05	-0.19858	-0.00011513	579.7643905660157	75.89	0.75607	75.89	75.614	76.37	0					40	14	4	0	0	0	0.4465	1	27628	27628		38.176	21.233	1	16859000			42598	974	31277	31526	41532	41532					-0.05828321941817194
REFGSVDYW	9	Unmodified	_REFGSVDYW_					0	0	0		nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;ENSG00000010165|ENST00000361735|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	MULTI-SECPEP	A375_MHC_IP_R2	2	580.16357421875	2	579.764363	1157.51417	-0.31233	-0.00018108	-0.41266	-0.00023925	-0.72499	-0.00042032	579.7641206697904	75.193	0.65867	75.93	75.621	76.279	0.73752					35	12	4	0	0	0	0.074405	1	28511	28511		79.596	51.109	1	13802000			42599	974	31277	31526	41533	41533					-0.05828321941817194
REFHDKDRTHW	11	Unmodified	_REFHDKDRTHW_					0	0	0			REV__ENST00000421085.6_1_X:10163107-10174585:+|nuORF	REV__ENST00000421085.6_1_X:10163107-10174585:+|nuORF	MSMS	A375_MHC_IP_R1	1	509.6534423828125	3	509.579762	1525.71746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.868	1	44.868	44.368	45.368	0								0	0	0	0.16172	1	15674	15674		9.7643	8.5494	1		+		42600	24584	31278	31527	41534	41534					-0.024372041674951106
REFILQKIY	9	Unmodified	_REFILQKIY_					0	0	0		nc|ENSG00000223501|Q8N1B4-2|VPS52;ENSG00000223501|ENST00000445902|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	MULTI-MSMS	A375_MHC_IP_R1	1	605.752685546875	2	605.353148	1208.69174	-0.58407	-0.00035357	0.58528	0.0003543	0.0012107	7.3289E-07	605.3534504061727	66.802	0.71643	66.802	66.529	67.245	0					36	13	4	0	0	0	0.04699	1	24170	24170		65.474	23.518	1	12740000			42601	9685	31279	31528	41535	41535					0.09574553328184265
REFILQKIY	9	Unmodified	_REFILQKIY_					0	0	0		nc|ENSG00000223501|Q8N1B4-2|VPS52;ENSG00000223501|ENST00000445902|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	MULTI-SECPEP	A375_MHC_IP_R2	2	404.3044738769531	3	403.904524	1208.69174	-0.19049	-7.694E-05	-0.29183	-0.00011787	-0.48232	-0.00019481	403.9043737986025	65.863	0.76393	66.601	66.273	67.037	0.73812					35	14	4	0	0	0	0.48018	1	24957	24957		39.923	11.742	1	5528400			42602	9685	31279	31528	41536	41536					0.09574553328184265
REFKARVDSF	10	Unmodified	_REFKARVDSF_					0	0	0		ENSG00000142599|ENST00000400908|RERE;ENST00000480342.5_1_1:8525723-8716473:-|nuORF	ENSG00000142599|ENST00000400908|RERE	ENSG00000142599|ENST00000400908|RERE	MULTI-SECPEP	A375_MHC_IP_R2	2	419.2843322753906	3	418.891166	1253.65167	-0.49246	-0.00020629	0.72899	0.00030537	0.23653	9.9082E-05	418.89122679522205	29.83	0.30324	30.529	30.385	30.688	0.69872					7	5	2	0	0	0	0.93405	1	10499	10499		5.0475	0	1	1084900			42603	5314	31280	31529	41537	41537					0.03499006657602877
REFLKDRTKKL	11	Unmodified	_REFLKDRTKKL_					0	0	0		tr|U7SSX4|U7SSX4_FUSNUDUF3102domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01534PE=4SV=1	tr|U7SSX4|U7SSX4_FUSNUDUF3102domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01534PE=4SV=1	tr|U7SSX4|U7SSX4_FUSNUDUF3102domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01534PE=4SV=1	MSMS	A375_MHC_IP_R1	1	717.4283447265625	2	717.432993	1432.85143	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.9	1	118.9	118.4	119.4	0								0	0	0	0.16279	1	43865	43865		4.1895	1.4543	1				42604	29653	31281	31530	41538	41538					0.15232061605343006
REFNKYLAY	9	Unmodified	_REFNKYLAY_					0	0	0		nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;ENST00000489243.5_1_9:6758133-6893415:+|nuORF	nc|ENSG00000293552|Q9H3R0-3|KDM4C	nc|ENSG00000293552|Q9H3R0-3|KDM4C	MULTI-SECPEP	A375_MHC_IP_R1	1	602.7116088867188	2	602.31148	1202.60841	-0.17787	-0.00010713	-0.15517	-9.3458E-05	-0.33304	-0.00020059	602.3114439530289	45.708	0.55912	45.708	45.484	46.043	0					19	10	3	0	0	0	0.18869	1	16016	16016		76.825	76.825	1	4399900			42605	2723	31282	31531	41539	41539					0.01520816880338316
REFNKYLAY	9	Unmodified	_REFNKYLAY_					0	0	0		nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;ENST00000489243.5_1_9:6758133-6893415:+|nuORF	nc|ENSG00000293552|Q9H3R0-3|KDM4C	nc|ENSG00000293552|Q9H3R0-3|KDM4C	MULTI-MSMS	A375_MHC_IP_R2	2	602.711181640625	2	602.31148	1202.60841	-0.60016	-0.00036148	-0.070901	-4.2704E-05	-0.67106	-0.00040419	602.813088481026	44.918	0.56122	45.687	45.39	45.951	0.7691					21	10	3	0	0	0	0.032333	1	16783	16783		72.968	38.036	1	5113500			42606	2723	31282	31531	41540	41540					0.01520816880338316
REFNLNELY	9	Unmodified	_REFNLNELY_					0	0	0		ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF	ENSG00000213593|ENST00000278422|TMX2	ENSG00000213593|ENST00000278422|TMX2	MULTI-SECPEP	A375_MHC_IP_R1	1	599.6984252929688	2	599.29857	1196.58259	-0.46894	-0.00028104	0.21013	0.00012593	-0.25882	-0.00015511	599.2985861375258	83.735	0.76074	83.735	83.38	84.141	0					28	14	3	0	0	0	0.43207	1	30640	30640		40.239	14.84	1	7548000			42607	9573	31283	31532	41541	41541					-0.007840773619591346
REFNLNELY	9	Unmodified	_REFNLNELY_					0	0	0		ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF	ENSG00000213593|ENST00000278422|TMX2	ENSG00000213593|ENST00000278422|TMX2	MULTI-MSMS	A375_MHC_IP_R2	2	599.2037353515625	2	599.29857	1196.58259	-0.51496	-0.00030862	-0.066377	-3.978E-05	-0.58134	-0.0003484	599.2985600118565	83.07	0.75909	83.81	83.444	84.203	0.73962					32	14	3	0	0	0	0.27064	1	31504	31504		32.786	7.3864	1	9328300			42608	9573	31283	31532	41542	41542					-0.007840773619591346
REFPDRLVGY	10	Unmodified	_REFPDRLVGY_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	A375_MHC_IP_R1	1	626.7275390625	2	626.327662	1250.64077	-0.48625	-0.00030455	0.052327	3.2774E-05	-0.43392	-0.00027178	626.3276881707894	55.966	1.6259	55.966	55.33	56.956	0					107	31	5	0	0	0	0.022052	3	20098	19879;20052;20098		94.909	68.641	1	165250000			42609	5898	31284	31533	41543;41544;41545	41545					0.02547604283313376
REFPDRLVGY	10	Unmodified	_REFPDRLVGY_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	A375_MHC_IP_R1	1	418.2872619628906	3	417.887533	1250.64077	0.26673	0.00011146	-0.27773	-0.00011606	-0.011002	-4.5975E-06	417.88743542178014	55.966	1.9326	55.966	55.33	57.263	0					131	37	5	0	0	0	0.12874	2	19880	19880;20320		57.477	41.202	1	222870000			42610	5898	31284	31533	41546;41547	41546					0.02547604283313376
REFPDRLVGY	10	Unmodified	_REFPDRLVGY_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	A375_MHC_IP_R2	2	626.7271728515625	2	626.327662	1250.64077	-0.92865	-0.00058164	0.3375	0.00021139	-0.59115	-0.00037025	626.3278645946673	55.208	2.1376	55.959	55.118	57.256	0.75075					116	41	5	0	0	0	0.062809	3	20913	20682;20869;20913		81.915	55.647	1	147050000			42611	5898	31284	31533	41548;41549;41550	41550					0.02547604283313376
REFPDRLVGY	10	Unmodified	_REFPDRLVGY_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-SECPEP	A375_MHC_IP_R2	2	418.2873229980469	3	417.887533	1250.64077	-0.1758	-7.3465E-05	-0.038426	-1.6058E-05	-0.21423	-8.9523E-05	417.88754424163056	55.207	2.5461	55.958	55.269	57.816	0.75075					146	49	6	0	0	0	0.25713	1	20678	20678		53.798	33.217	1	229990000			42612	5898	31284	31533	41551	41551					0.02547604283313376
REFPGRGGVW	10	Unmodified	_REFPGRGGVW_					0	0	0		nc|ENSG00000182013|Q86V59-2|PNMA8A;ENSG00000182013|ENST00000313683|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	MULTI-MSMS	A375_MHC_IP_R1	1	387.9367980957031	3	387.536835	1159.58868	0.41708	0.00016163	-0.14838	-5.7502E-05	0.2687	0.00010413	387.5367490734744	42.791	1.4716	42.791	42.183	43.655	0					98	28	4	0	0	0	0.45806	1	14956	14956		27.129	16.329	1	29060000			42613	8372	31285	31534	41552	41552					0.015264856602243526
REFPGRGGVW	10	Unmodified	_REFPGRGGVW_					0	0	0		nc|ENSG00000182013|Q86V59-2|PNMA8A;ENSG00000182013|ENST00000313683|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	MULTI-SECPEP	A375_MHC_IP_R1	1	581.1243896484375	2	580.801614	1159.58868	-0.008028	-4.6627E-06	-0.013922	-8.086E-06	-0.02195	-1.2749E-05	580.801539652566	42.833	1.1157	42.833	42.285	43.4	0					54	21	3	0	0	0	0.50381	1	14845	14845		47.594	24.858	1	6176600			42614	8372	31285	31534	41553	41553					0.015264856602243526
REFPGRGGVW	10	Unmodified	_REFPGRGGVW_					0	0	0		nc|ENSG00000182013|Q86V59-2|PNMA8A;ENSG00000182013|ENST00000313683|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	MULTI-MSMS	A375_MHC_IP_R2	2	387.93682861328125	3	387.536835	1159.58868	-0.12283	-4.7601E-05	0.13153	5.0974E-05	0.0087036	3.373E-06	387.53685971980883	42.093	1.6285	42.866	42.046	43.675	0.77322					96	31	4	0	0	0	0.37567	2	15430	15430;15657		31.462	20.563	1	41081000			42615	8372	31285	31534	41554;41555	41554					0.015264856602243526
REFPGRGGVW	10	Unmodified	_REFPGRGGVW_					0	0	0		nc|ENSG00000182013|Q86V59-2|PNMA8A;ENSG00000182013|ENST00000313683|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	MULTI-SECPEP	A375_MHC_IP_R2	2	581.1244506835938	2	580.801614	1159.58868	-0.29757	-0.00017283	0.036909	2.1437E-05	-0.26066	-0.00015139	580.8015021434618	41.932	1.0709	42.706	42.149	43.22	0.77451					60	20	4	0	0	0	0.86849	1	15609	15609		21.59	11.516	1	9683400			42616	8372	31285	31534	41556	41556					0.015264856602243526
REFPKFFTF	9	Unmodified	_REFPKFFTF_					0	0	0		nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA	nc|ENSG00000278540|Q13085|ACACA	nc|ENSG00000278540|Q13085|ACACA	MULTI-MSMS	A375_MHC_IP_R1	1	407.28155517578125	3	406.88172	1217.62333	-0.31738	-0.00012914	0.5225	0.00021259	0.20512	8.3459E-05	406.8818548659575	95.743	0.65444	95.743	95.364	96.018	0					28	12	3	0	0	0	0.3489	1	35169	35169		25.997	4.4072	1	1692100			42617	10037	31286	31535	41557	41557					0.02322308748330215
REFPKFFTF	9	Unmodified	_REFPKFFTF_					0	0	0		nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA	nc|ENSG00000278540|Q13085|ACACA	nc|ENSG00000278540|Q13085|ACACA	MULTI-MSMS	A375_MHC_IP_R1	1	610.6978149414062	2	609.818941	1217.62333	-0.379	-0.00023112	0.09998	6.097E-05	-0.27902	-0.00017015	609.8189105032366	95.738	0.85879	95.738	95.415	96.274	0					50	16	4	0	0	0	0.44183	1	35250	35250		22.658	11.163	1	24069000			42618	10037	31286	31535	41558	41558					0.02322308748330215
REFPKFFTF	9	Unmodified	_REFPKFFTF_					0	0	0		nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA	nc|ENSG00000278540|Q13085|ACACA	nc|ENSG00000278540|Q13085|ACACA	MULTI-MSMS	A375_MHC_IP_R2	2	407.281494140625	3	406.88172	1217.62333	0.27509	0.00011193	-0.22624	-9.2052E-05	0.048854	1.9878E-05	406.88155911872883	94.845	0.55605	95.59	95.274	95.83	0.74474					26	10	3	0	0	0	0.52905	1	36049	36049		13.519	8.6217	1	2040200			42619	10037	31286	31535	41559	41559					0.02322308748330215
REFPKFFTF	9	Unmodified	_REFPKFFTF_					0	0	0		nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA	nc|ENSG00000278540|Q13085|ACACA	nc|ENSG00000278540|Q13085|ACACA	MULTI-SECPEP	A375_MHC_IP_R2	2	610.2188110351562	2	609.818941	1217.62333	-0.21485	-0.00013102	-0.34738	-0.00021184	-0.56223	-0.00034286	609.8186027507762	94.808	1.0159	95.553	95.173	96.189	0.74474					56	19	5	0	0	0	0.65623	1	35971	35971		18.373	18.373	1	25019000			42620	10037	31286	31535	41560	41560					0.02322308748330215
REFQNPPQL	9	Unmodified	_REFQNPPQL_					0	0	0		nc|ENSG00000175224|O75143|ATG13;ENSG00000175224|ENST00000683050|ATG13;nc|ENSG00000175224|O75143-4|ATG13;nc|ENSG00000175224|O75143-2|ATG13	nc|ENSG00000175224|O75143|ATG13	nc|ENSG00000175224|O75143|ATG13	MULTI-SECPEP	A375_MHC_IP_R2	2	565.1930541992188	2	564.793455	1127.57236	-0.48142	-0.0002719	-0.50454	-0.00028496	-0.98596	-0.00055686	564.7932330387937	45.602	0.45255	46.367	46.15	46.603	0.76519					17	8	3	0	0	0	0.27114	1	17068	17068		53.404	22.767	1	3072100			42621	7944	31287	31536	41561	41561					0.013673597034767226
REFSPEEGLYY	11	Unmodified	_REFSPEEGLYY_					0	0	0		ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1;ENST00000481600.5_1_10:127417653-127452038:+|nuORF;ENST00000419769.6_1_10:127430814-127452038:+|nuORF	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	696.2203979492188	2	695.319699	1388.62485	-0.81672	-0.00056788	-0.37138	-0.00025823	-1.1881	-0.00082611	695.820819737574	71.015	0.45642	71.749	71.503	71.959	0.73421					15	8	2	0	0	0	0.72932	1	26939	26939		9.544	0.16085	1	3058700			42622	2771	31288	31537	41562	41562					-0.053921467442251014
REFSPEEGLYY	11	Unmodified	_REFSPEEGLYY_					0	0	0		ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1;ENST00000481600.5_1_10:127417653-127452038:+|nuORF;ENST00000419769.6_1_10:127430814-127452038:+|nuORF	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	695.319699	1388.62485	-0.41234	-0.00028671	-0.59209	-0.00041169	-1.0044	-0.0006984	695.820562820019	71.64	0.35004	71.64	71.415	71.765	0	-0.054516	-0.00016395	NaN	9.544	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3897300			42623	2771	31288	31537							-0.053921467442251014
REFSPEEGLYY	11	Unmodified	_REFSPEEGLYY_					0	0	0		ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1;ENST00000481600.5_1_10:127417653-127452038:+|nuORF;ENST00000419769.6_1_10:127430814-127452038:+|nuORF	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	695.319699	1388.62485	-0.81672	-0.00056788	-0.37138	-0.00025823	-1.1881	-0.00082611	695.820819737574	71.015	0.45642	71.749	71.503	71.959	0.73421	0.054516	0.00014297	NaN	9.544	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3058700			42624	2771	31288	31537							-0.053921467442251014
REFWPQEVW	9	Unmodified	_REFWPQEVW_					0	0	0		nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENSG00000079459|ENST00000220584|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF;nc|ENSG00000079459|P37268-4|FDFT1	nc|ENSG00000079459|P37268-3|FDFT1	nc|ENSG00000079459|P37268-3|FDFT1	MULTI-SECPEP	A375_MHC_IP_R2	2	639.209228515625	2	638.809105	1275.60366	-0.65082	-0.00041575	-0.13534	-8.6457E-05	-0.78616	-0.00050221	638.8091396851016	101.22	0.66143	101.99	101.7	102.36	0.76428					26	12	3	0	0	0	0.656	1	38358	38358		24.882	18.676	1	3220800			42625	1697	31289	31538	41563	41563					-0.023120672624372673
REFYKRWRIYK	11	Unmodified	_REFYKRWRIYK_					0	0	0		tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	MSMS	A375_MHC_IP_R2	2	822.9367065429688	2	822.959709	1643.90486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.15	1	119.68	119.18	120.18	0.5321								0	0	0	0.16341	1	45352	45352		0.96228	0.69326	1				42626	29622	31290	31539	41564	41564					0.10866859107864002
REFYTVDGQKF	11	Unmodified	_REFYTVDGQKF_					0	0	0		ENSG00000135048|ENST00000377044|CEMIP2;nc|ENSG00000135048|Q9UHN6-2|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	MULTI-MSMS	A375_MHC_IP_R1	1	464.6320495605469	3	463.898098	1388.67246	0.19022	8.8243E-05	-0.3311	-0.0001536	-0.14088	-6.5355E-05	463.8979473438734	49.413	0.81034	49.413	48.983	49.793	0					43	15	4	0	0	0	0.00035307	1	17438	17438		91.233	75.694	1	32572000			42627	4638	31291	31540	41565	41565					-0.0063244775340081105
REFYTVDGQKF	11	Unmodified	_REFYTVDGQKF_					0	0	0		ENSG00000135048|ENST00000377044|CEMIP2;nc|ENSG00000135048|Q9UHN6-2|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	MULTI-MSMS	A375_MHC_IP_R1	1	695.7431640625	2	695.343509	1388.67246	-0.19723	-0.00013715	-0.045004	-3.1293E-05	-0.24224	-0.00016844	695.3433833249364	49.389	0.60886	49.389	49.134	49.743	0					35	11	4	0	0	0	3.2379E-08	1	17439	17439		160.91	129.64	1	17454000			42628	4638	31291	31540	41566	41566					-0.0063244775340081105
REFYTVDGQKF	11	Unmodified	_REFYTVDGQKF_					0	0	0		ENSG00000135048|ENST00000377044|CEMIP2;nc|ENSG00000135048|Q9UHN6-2|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	MULTI-MSMS	A375_MHC_IP_R2	2	695.7429809570312	2	695.343509	1388.67246	-0.75841	-0.00052736	-0.20325	-0.00014133	-0.96166	-0.00066869	695.3433227070515	48.678	0.56112	49.435	49.18	49.741	0.75737					31	10	4	0	0	0	0.00031245	1	18250	18250		121.61	95.341	1	14193000			42629	4638	31291	31540	41567	41567					-0.0063244775340081105
REFYTVDGQKF	11	Unmodified	_REFYTVDGQKF_					0	0	0		ENSG00000135048|ENST00000377044|CEMIP2;nc|ENSG00000135048|Q9UHN6-2|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	464.2976379394531	3	463.898098	1388.67246	-0.65078	-0.0003019	-0.15315	-7.1046E-05	-0.80393	-0.00037294	463.8979722069749	48.742	1.015	49.499	48.879	49.894	0.75737					48	19	4	0	0	0	0.077217	1	18243	18243		87.442	78.199	1	26643000			42630	4638	31291	31540	41568	41568					-0.0063244775340081105
REGDPLILQY	10	Unmodified	_REGDPLILQY_					0	0	0		nc|ENSG00000134461|Q6P6B7-2|ANKRD16;ENSG00000134461|ENST00000380094|ANKRD16	nc|ENSG00000134461|Q6P6B7-2|ANKRD16	nc|ENSG00000134461|Q6P6B7-2|ANKRD16	MULTI-SECPEP	A375_MHC_IP_R1	1	602.7225341796875	2	602.322045	1202.62954	-0.43501	-0.00026201	3.4506	0.0020784	3.0156	0.0018164	602.3242249348964	80.155	0.86695	80.155	79.574	80.441	0					30	16	3	0	0	0	0.67395	1	29290	29290		37.075	5.8063	1	3200800			42631	4578	31292	31541	41569	41569					0.03632782189220052
REGDPLILQY	10	Unmodified	_REGDPLILQY_					0	0	0		nc|ENSG00000134461|Q6P6B7-2|ANKRD16;ENSG00000134461|ENST00000380094|ANKRD16	nc|ENSG00000134461|Q6P6B7-2|ANKRD16	nc|ENSG00000134461|Q6P6B7-2|ANKRD16	MULTI-SECPEP	A375_MHC_IP_R2	2	602.7216796875	2	602.322045	1202.62954	-0.3684	-0.0002219	-0.13706	-8.2552E-05	-0.50546	-0.00030445	602.3218954944284	79.401	0.40336	80.146	79.896	80.299	0.74474					17	7	3	0	0	0	0.75968	1	30152	30152		30.703	13.261	1	2633300			42632	4578	31292	31541	41570	41570					0.03632782189220052
REGEIAQFL	9	Unmodified	_REGEIAQFL_					0	0	0		ENSG00000110711|ENST00000279146|AIP	ENSG00000110711|ENST00000279146|AIP	ENSG00000110711|ENST00000279146|AIP	MULTI-SECPEP	A375_MHC_IP_R2	2	532.1820068359375	2	531.782556	1061.55056	-0.66208	-0.00035208	-0.54945	-0.00029219	-1.2115	-0.00064427	531.7822547246352	76.294	0.45767	77.034	76.792	77.25	0.74052					19	8	3	0	0	0	0.4465	1	28951	28951		38.176	4.0731	1	4879800			42633	2941	31293	31542	41571	41571					0.022245549549097632
REGEIRHLF	9	Unmodified	_REGEIRHLF_					0	0	0		SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	386.296630859375	3	386.21224	1155.61489	0.2375	9.1726E-05	-0.013402	-5.1759E-06	0.2241	8.655E-05	386.21219244528595	34.714	0.60775	34.714	34.456	35.064	0					24	11	3	0	0	0	0.13192	1	11495	11495		44.945	22.287	1	44742000			42634	9018	31294	31543	41572	41572					0.04330754831698869
REGEIRHLF	9	Unmodified	_REGEIRHLF_					0	0	0		SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	386.612060546875	3	386.21224	1155.61489	-0.66712	-0.00025765	0.69586	0.00026875	0.028733	1.1097E-05	386.2124919955252	33.717	0.60678	34.469	34.196	34.803	0.75225					27	11	3	0	0	0	0.11448	1	12059	12059		48.073	30.63	1	35699000			42635	9018	31294	31543	41573	41573					0.04330754831698869
REGLSSERW	9	Unmodified	_REGLSSERW_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	MULTI-SECPEP	A375_MHC_IP_R1	1	373.6012268066406	3	373.856233	1118.54687	0.25208	9.4242E-05	0.12377	4.6271E-05	0.37585	0.00014051	373.85621585045214	28.287	0.35252	28.287	28.088	28.44	0					13	6	3	0	0	0	0.46121	1	8704	8704		19.987	5.0297	1	3049700			42636	3458	31295	31544	41574	41574					-0.007661148189754385
REGLSSERW	9	Unmodified	_REGLSSERW_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	MULTI-SECPEP	A375_MHC_IP_R2	2	373.600830078125	3	373.856233	1118.54687	0.41987	0.00015697	-0.5007	-0.00018719	-0.080833	-3.022E-05	373.85609613703656	27.566	0.40547	28.245	27.996	28.401	0.67857					12	7	2	0	0	0	0.46121	1	9443	9443		24.957	16.205	1	6375400			42637	3458	31295	31544	41575	41575					-0.007661148189754385
REHDIAIKFF	10	Unmodified	_REHDIAIKFF_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	426.2996826171875	3	425.899662	1274.67716	-0.15784	-6.7226E-05	0.30266	0.0001289	0.14481	6.1676E-05	425.8998050987816	64.382	1.0148	64.382	64.04	65.055	0					51	19	4	0	0	0	0.06969	1	23273	23273		70.321	46.52	1	14374000			42638	876	31296	31545	41576	41576					0.0508048118001625
REHDIAIKFF	10	Unmodified	_REHDIAIKFF_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	426.2995300292969	3	425.899662	1274.67716	-0.11813	-5.0312E-05	-0.38717	-0.0001649	-0.5053	-0.00021521	425.89950508302934	63.428	0.8127	64.168	63.835	64.648	0.74022					41	15	4	0	0	0	0.06969	1	23999	23999		70.321	54.184	1	15831000			42639	876	31296	31545	41577	41577					0.0508048118001625
REHGPLPQKF	10	Unmodified	_REHGPLPQKF_					0	0	0		ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	MULTI-MSMS	A375_MHC_IP_R1	1	404.28961181640625	3	403.556007	1207.64619	-0.43826	-0.00017686	-2.2305	-0.00090012	-2.6687	-0.001077	403.8889595486709	24.947	0.6592	24.947	24.801	25.46	0					20	12	3	0	0	0	0.70792	1	7242	7242		8.7518	1.6501	1	6495100			42640	8639	31297	31546	41578	41578					0.050673278657768606
REHGPLPQKF	10	Unmodified	_REHGPLPQKF_					0	0	0		ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	MULTI-MSMS	A375_MHC_IP_R2	2	404.2878112792969	3	403.556007	1207.64619	-0.27364	-0.00011043	-2.8469	-0.0011489	-3.1206	-0.0012593	403.88855261316087	24.268	0.35586	24.912	24.653	25.009	0.64368					13	6	3	0	0	0	0.68952	1	7960	7960		14.171	0.55586	1	7797800			42641	8639	31297	31546	41579	41579					0.050673278657768606
REHHLRYWLYY	11	Unmodified	_REHHLRYWLYY_					0	0	0		B4GALT2|p.H163Y|1|0.34|ENSG00000117411|chr1:43981862-43981862|C/T|missense_variant	B4GALT2|p.H163Y|1|0.34|ENSG00000117411|chr1:43981862-43981862|C/T|missense_variant	B4GALT2|p.H163Y|1|0.34|ENSG00000117411|chr1:43981862-43981862|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	545.7018432617188	3	545.944153	1634.81063	-0.69906	-0.00038165	-1.4774	-0.0008066	-2.1765	-0.0011883	546.2774105054689	91.283	1.0626	92.018	91.211	92.273	0.73451					30	20	2	0	0	0	1.0012	1	34574	34574		0.073264	0	1	1786900			42642	222	31298	31547	41580	41580					0.018617202857512893
REHINLGCD	9	Unmodified	_REHINLGCD_					0	0	0		ENSG00000213585|ENST00000265333|VDAC1	ENSG00000213585|ENST00000265333|VDAC1	ENSG00000213585|ENST00000265333|VDAC1	MSMS	A375_MHC_IP_R1	1	528.6846923828125	2	528.74819	1055.48183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.328	1	29.328	28.828	29.828	0								0	0	0	0.15486	1	9158	9158		10.824	0.75	1				42643	9571	31299	31548	41581	41581					-0.04369432616476843
REHRHRRRYYY	11	Unmodified	_REHRHRRRYYY_					0	0	0			REV__ENST00000507405.5_1_5:138755893-138773164:-|nuORF	REV__ENST00000507405.5_1_5:138755893-138773164:-|nuORF	MSMS	A375_MHC_IP_R2	2	846.84130859375	2	846.440538	1690.86652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.31	1	125.61	125.11	126.11	0.2951								0	0	0	0.16354	1	48807	48807		0.30703	0.30703	1		+		42644	20995	31300	31549	41582	41582					0.04872366245945159
REHSLQTV	8	Unmodified	_REHSLQTV_					0	0	0			REV__ENSG00000172578|ENST00000341319|KLHL6	REV__ENSG00000172578|ENST00000341319|KLHL6	MSMS	A375_MHC_IP_R1	1	485.65887451171875	2	485.259248	968.503943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.326	1	94.326	93.826	94.826	0								0	0	0	0.16876	1	34670	34670		13.042	0.51092	1		+		42645	21158	31301	31550	41583	41583					0.018431151236086407
REHVTLYSK	9	Unmodified	_REHVTLYSK_					0	0	0			REV__nc|ENSG00000130684|Q9Y3M9-2|ZNF337	REV__nc|ENSG00000130684|Q9Y3M9-2|ZNF337	MULTI-SECPEP	A375_MHC_IP_R1	1	377.4422302246094	3	378.208495	1131.60366	0.36116	0.00013659	-0.26733	-0.00010111	0.093825	3.5486E-05	378.20828968119713	37.67	0.56192	37.67	37.454	38.016	0					15	10	2	0	0	0	0.63327	1	12811	12811		8.9762	0	1	2865700	+		42646	18553	31302	31551	41584	41584					0.04311932737573443
REHYIWSWS	9	Unmodified	_REHYIWSWS_					0	0	0			REV__ENST00000604354.1_1_5:180743383-180748792:+|nuORF	REV__ENST00000604354.1_1_5:180743383-180748792:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	632.6989135742188	2	632.298904	1262.58326	-0.70325	-0.00044466	0.65842	0.00041632	-0.044833	-2.8348E-05	632.2992551467603	46.278	1.5756	46.278	45.992	47.567	0					52	30	2	0	0	0	0.73415	1	16213	16213		3.9444	3.9444	1	4434700	+		42647	26530	31303	31552	41585	41585					-0.037532379222511736
REIAEVNKKL	10	Unmodified	_REIAEVNKKL_					0	0	0		ENST00000519391.1_1_8:118542904-118552214:+|nuORF;ENSG00000164758|ENST00000297347|MED30	ENST00000519391.1_1_8:118542904-118552214:+|nuORF	ENST00000519391.1_1_8:118542904-118552214:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	400.97479248046875	3	400.575067	1198.70337	-0.16437	-6.5842E-05	0.15509	6.2125E-05	-0.0092773	-3.7163E-06	400.5751139553498	20.536	0.71356	20.536	20.079	20.793	0					29	9	4	0	0	0	0.22844	2	5241	5241;5299		46.34	27.196	1	10968000			42648	6879	31304	31553	41586;41587	41586					0.11196750351518858
REIAEVNKKL	10	Unmodified	_REIAEVNKKL_					0	0	0		ENST00000519391.1_1_8:118542904-118552214:+|nuORF;ENSG00000164758|ENST00000297347|MED30	ENST00000519391.1_1_8:118542904-118552214:+|nuORF	ENST00000519391.1_1_8:118542904-118552214:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	400.9749755859375	3	400.575067	1198.70337	-0.3083	-0.0001235	0.12509	5.0107E-05	-0.18321	-7.339E-05	400.57506145092054	19.14	0.4522	19.743	19.533	19.986	0.60308					26	8	5	0	0	0	0.11934	2	5856	5837;5856		59.496	29.064	1	11271000			42649	6879	31304	31553	41588;41589	41589					0.11196750351518858
REIDYKTAF	9	Unmodified	_REIDYKTAF_					0	0	0		nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8;ENST00000523998.1_1_8:95888301-95888382:+|nuORF	nc|ENSG00000164941|Q75QN2-2|INTS8	nc|ENSG00000164941|Q75QN2-2|INTS8	MULTI-MSMS	A375_MHC_IP_R1	1	381.93304443359375	3	381.532868	1141.57677	0.46414	0.00017709	-0.33412	-0.00012748	0.13002	4.9606E-05	381.5327615025858	40.62	0.50666	40.62	40.406	40.913	0					18	9	3	0	0	0	0.063448	1	13974	13974		48.561	31.512	1	3072300			42650	6896	31305	31554	41590	41590					0.011648241263856107
REIDYKTAF	9	Unmodified	_REIDYKTAF_					0	0	0		nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8;ENST00000523998.1_1_8:95888301-95888382:+|nuORF	nc|ENSG00000164941|Q75QN2-2|INTS8	nc|ENSG00000164941|Q75QN2-2|INTS8	MULTI-SECPEP	A375_MHC_IP_R1	1	572.1957397460938	2	571.795663	1141.57677	-0.13598	-7.775E-05	0.083975	4.8016E-05	-0.052001	-2.9734E-05	571.7957373964429	40.613	0.45759	40.613	40.355	40.813	0					21	8	4	0	0	0	0.35788	1	13963	13963		61.09	43.977	1	7021100			42651	6896	31305	31554	41591	41591					0.011648241263856107
REIDYKTAF	9	Unmodified	_REIDYKTAF_					0	0	0		nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8;ENST00000523998.1_1_8:95888301-95888382:+|nuORF	nc|ENSG00000164941|Q75QN2-2|INTS8	nc|ENSG00000164941|Q75QN2-2|INTS8	MULTI-SECPEP	A375_MHC_IP_R2	2	381.9328918457031	3	381.532868	1141.57677	-0.10115	-3.8593E-05	-0.011833	-4.5148E-06	-0.11299	-4.3108E-05	381.5328975056112	39.873	0.86273	40.648	40.422	41.285	0.77451					27	16	4	0	0	0	0.4557	1	14758	14758		35.08	20.123	1	3242700			42652	6896	31305	31554	41592	41592					0.011648241263856107
REIDYKTAF	9	Unmodified	_REIDYKTAF_					0	0	0		nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8;ENST00000523998.1_1_8:95888301-95888382:+|nuORF	nc|ENSG00000164941|Q75QN2-2|INTS8	nc|ENSG00000164941|Q75QN2-2|INTS8	MULTI-SECPEP	A375_MHC_IP_R2	2	572.1954345703125	2	571.795663	1141.57677	-0.31899	-0.0001824	-0.03545	-2.027E-05	-0.35444	-0.00020267	571.7956720976842	39.87	0.45734	40.644	40.371	40.828	0.77451					23	8	4	0	0	0	0.21838	1	14749	14749		74.2	46.571	1	8635000			42653	6896	31305	31554	41593	41593					0.011648241263856107
REIEANDIVF	10	Unmodified	_REIEANDIVF_					0	0	0		ENSG00000116729|ENST00000262348|WLS;nc|ENSG00000116729|Q5T9L3-2|WLS	ENSG00000116729|ENST00000262348|WLS	ENSG00000116729|ENST00000262348|WLS	MULTI-MSMS	A375_MHC_IP_R2	2	603.71142578125	2	603.311677	1204.6088	-0.46313	-0.00027941	-0.056306	-3.397E-05	-0.51944	-0.00031338	603.311478138671	74.023	0.71167	74.761	74.553	75.264	0.73752					24	13	3	0	0	0	0.61662	1	28097	28097		19.626	3.4768	1	1296300			42654	3423	31306	31555	41594	41594					0.014681918094993307
REIEELRQRY	10	Unmodified	_REIEELRQRY_					0	0	0		STK3|p.E460K|1|0.36|ENSG00000104375|chr8:98455940-98455940|C/T|missense_variant;ENSG00000104375|ENST00000419617|STK3;nc|ENSG00000104375|Q13188-2|STK3	STK3|p.E460K|1|0.36|ENSG00000104375|chr8:98455940-98455940|C/T|missense_variant	STK3|p.E460K|1|0.36|ENSG00000104375|chr8:98455940-98455940|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	464.9840087890625	3	464.584513	1390.73171	-0.21265	-9.8796E-05	-0.50151	-0.00023299	-0.71417	-0.00033179	464.5842930751748	25.229	0.50877	25.229	25.053	25.562	0					25	9	3	0	0	0	0.095191	1	7342	7342		64.688	28.293	1	20183000			42655	2505	31307	31556	41595	41595					0.05197448260787496
REIEELRQRY	10	Unmodified	_REIEELRQRY_					0	0	0		STK3|p.E460K|1|0.36|ENSG00000104375|chr8:98455940-98455940|C/T|missense_variant;ENSG00000104375|ENST00000419617|STK3;nc|ENSG00000104375|Q13188-2|STK3	STK3|p.E460K|1|0.36|ENSG00000104375|chr8:98455940-98455940|C/T|missense_variant	STK3|p.E460K|1|0.36|ENSG00000104375|chr8:98455940-98455940|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	464.9841003417969	3	464.584513	1390.73171	-0.99131	-0.00046055	-0.12813	-5.9525E-05	-1.1194	-0.00052007	464.5843732891928	24.757	0.45752	25.401	25.11	25.568	0.64368					27	8	4	0	0	0	0.40573	1	8137	8137		33.821	17.547	1	15455000			42656	2505	31307	31556	41596	41596					0.05197448260787496
REIEGRAI	8	Unmodified	_REIEGRAI_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	A375_MHC_IP_R1	1	472.6692199707031	2	472.269616	942.524678	-0.29111	-0.00013748	-0.1204	-5.686E-05	-0.41151	-0.00019434	472.2695320530931	20.513	1.0691	20.513	20.232	21.301	0					55	20	4	0	0	0	0.16884	1	5240	5240		72.968	16.791	1	43775000			42657	3266	31308	31557	41597	41597					0.051117055032818826
REIEGRAI	8	Unmodified	_REIEGRAI_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	A375_MHC_IP_R1	1	472.6695251464844	2	472.269616	942.524678	-0.089777	-4.2399E-05	0.062234	2.9391E-05	-0.027543	-1.3008E-05	472.2696277025073	22.79	0.60492	22.79	22.469	23.074	0					22	11	4	0	0	0	0.534	1	6156	6156		47.594	11.467	1	7733800			42658	3266	31308	31557	41598	41598					0.051117055032818826
REIEGRAI	8	Unmodified	_REIEGRAI_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	A375_MHC_IP_R2	2	472.66961669921875	2	472.269616	942.524678	-0.85868	-0.00040553	0.17095	8.0736E-05	-0.68773	-0.00032479	472.2696645391108	19.306	0.70859	19.909	19.683	20.392	0.60308					37	13	4	0	0	0	0.11271	1	5892	5892		92.653	27.418	1	42356000			42659	3266	31308	31557	41599	41599					0.051117055032818826
REIEMAQKL	9	Oxidation (M)	_REIEM(Oxidation (M))AQKL_		REIEM(1)AQKL		REIEM(59)AQKL	0	0	1		nc|ENSG00000169398|Q05397-2|PTK2;nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;nc|ENSG00000169398|Q05397-6|PTK2	nc|ENSG00000169398|Q05397-2|PTK2	nc|ENSG00000169398|Q05397-2|PTK2	MULTI-MSMS	A375_MHC_IP_R1	1	567.702880859375	2	567.302798	1132.59104	-0.10363	-5.879E-05	0.019496	1.106E-05	-0.084135	-4.773E-05	567.3027876441228	22.848	0.50151	22.848	22.623	23.125	0					30	9	4	0	0	0	0.062639	1	6162	6162		59.368	21.193	1	6972500			42660	7404	31309	31558	41600	41600		377			0.030051532830157157
REIEMAQKL	9	Unmodified	_REIEMAQKL_					0	0	0		nc|ENSG00000169398|Q05397-2|PTK2;nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;nc|ENSG00000169398|Q05397-6|PTK2	nc|ENSG00000169398|Q05397-2|PTK2	nc|ENSG00000169398|Q05397-2|PTK2	MULTI-SECPEP	A375_MHC_IP_R2	2	559.7048950195312	2	559.305341	1116.59613	-0.7162	-0.00040057	-0.44066	-0.00024646	-1.1569	-0.00064704	559.3052097709137	31.231	0.40972	31.949	31.77	32.18	0.71857					17	7	3	0	0	0	0.15393	1	11043	11043		71.708	14.237	1	6380200			42661	7404	31309	31559	41601	41601					0.04249457145624547
REIESSPQY	9	Unmodified	_REIESSPQY_					0	0	0		nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENST00000570284.1_1_16:28840745-28842349:+|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L;ENST00000564284.1_1_16:28841101-28842119:+|nuORF	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MULTI-MSMS	A375_MHC_IP_R1	1	555.1666870117188	2	554.767103	1107.51965	-0.72033	-0.00039962	-0.0036923	-2.0484E-06	-0.72402	-0.00040166	554.7671318721848	25.689	1.1673	25.689	25.306	26.474	0					68	22	5	0	0	0	0.016157	2	7502	7502;7517		88.364	36.948	1	235850000			42662	7310	31310	31560	41602;41603	41602					-0.029806431499764585
REIESSPQY	9	Unmodified	_REIESSPQY_					0	0	0		nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENST00000570284.1_1_16:28840745-28842349:+|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L;ENST00000564284.1_1_16:28841101-28842119:+|nuORF	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MULTI-SECPEP	A375_MHC_IP_R2	2	555.16650390625	2	554.767103	1107.51965	-1.208	-0.00067018	0.087385	4.8478E-05	-1.1206	-0.0006217	554.7671782341929	25.152	1.1697	25.795	25.568	26.737	0.64368					66	22	5	0	0	0	0.038931	1	8348	8348		100.09	70.25	1	230200000			42663	7310	31310	31560	41604	41604					-0.029806431499764585
REIHNTDGE	9	Unmodified	_REIHNTDGE_					0	0	0			REV__ENST00000476417.5_1_10:7615057-7659255:-|nuORF	REV__ENST00000476417.5_1_10:7615057-7659255:-|nuORF	MSMS	A375_MHC_IP_R1	1	535.6744995117188	2	535.746702	1069.47885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.39	1	29.39	28.89	29.89	0								0	0	0	0.15486	1	9192	9192		13.042	5.1323	1		+		42664	18236	31311	31561	41605	41605					-0.053109844696109576
REIIADVKKF	10	Unmodified	_REIIADVKKF_					0	0	0		ENST00000523727.1_1_5:170308890-170323149:+|nuORF;ENST00000519130.5_1_5:170289037-170336799:+|nuORF;ENST00000443155.5_1_5:170288887-170338173:+|nuORF;nc|ENSG00000204764|Q9H2T7-2|RANBP17;ENSG00000204764|ENST00000523189|RANBP17	ENST00000523727.1_1_5:170308890-170323149:+|nuORF	ENST00000523727.1_1_5:170308890-170323149:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	407.3114929199219	3	406.911679	1217.71321	-0.17866	-7.2698E-05	0.010293	4.1885E-06	-0.16836	-6.8509E-05	406.91158837023477	35.679	0.40558	36.443	36.233	36.638	0.76338					15	7	3	0	0	0	0.37263	2	12988	12952;12988		35.793	22.275	1	2810100			42665	9478	31312	31562	41606;41607	41607					0.11305938356872502
REILSSLLPF	10	Unmodified	_REILSSLLPF_					0	0	0		ENST00000554644.1_1_14:93723510-93760888:-|nuORF;ENSG00000011114|ENST00000334746|BTBD7;BTBD7|p.V520A|1|0.24|ENSG00000011114|chr14:93257244-93257244|A/G|missense_variant;nc|ENSG00000011114|Q9P203-5|BTBD7	ENST00000554644.1_1_14:93723510-93760888:-|nuORF	ENST00000554644.1_1_14:93723510-93760888:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	392.6329040527344	3	392.23253	1173.67576	-0.024208	-9.4951E-06	0.097535	3.8256E-05	0.073327	2.8761E-05	392.232511007648	43.529	0.55504	44.302	44.079	44.634	0.7724					19	10	3	0	0	0	0.61662	1	16209	16209		19.626	2.5774	1	7362700			42666	991	31313	31563	41608	41608					0.09586847091281925
REILSSLLPF	10	Unmodified	_REILSSLLPF_					0	0	0		ENST00000554644.1_1_14:93723510-93760888:-|nuORF;ENSG00000011114|ENST00000334746|BTBD7;BTBD7|p.V520A|1|0.24|ENSG00000011114|chr14:93257244-93257244|A/G|missense_variant;nc|ENSG00000011114|Q9P203-5|BTBD7	ENST00000554644.1_1_14:93723510-93760888:-|nuORF	ENST00000554644.1_1_14:93723510-93760888:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	392.23253	1173.67576	0.34521	0.0001354	0.053978	2.1172E-05	0.39919	0.00015657	392.2324963558361	44.308	0.51311	44.308	44.113	44.626	0	0.0032407	-1.5508E-05	NaN	19.626	29	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8403700			42667	991	31313	31563							0.09586847091281925
REINADIKRKL	11	Unmodified	_REINADIKRKL_					0	0	0		ENSG00000278289|ENST00000620654|CT45A6;ENSG00000273696|ENST00000610598|CT45A7;ENSG00000269096|ENST00000598716|CT45A3;ENSG00000268940|ENST00000594565|CT45A1;ENSG00000228836|ENST00000698999|CT45A5	ENSG00000278289|ENST00000620654|CT45A6	ENSG00000278289|ENST00000620654|CT45A6	MULTI-MSMS	A375_MHC_IP_R1	1	453.0086975097656	3	452.60877	1354.80448	0.10753	4.8669E-05	-0.47916	-0.00021687	-0.37163	-0.0001682	452.6084907342794	21.845	0.60987	21.845	21.403	22.013	0					23	11	3	0	0	0	0.43802	1	5783	5783		25.782	12.247	1	3556800			42668	9712	31314	31564	41609	41609					0.1412720205421465
REINADIKRKL	11	Unmodified	_REINADIKRKL_					0	0	0		ENSG00000278289|ENST00000620654|CT45A6;ENSG00000273696|ENST00000610598|CT45A7;ENSG00000269096|ENST00000598716|CT45A3;ENSG00000268940|ENST00000594565|CT45A1;ENSG00000228836|ENST00000698999|CT45A5	ENSG00000278289|ENST00000620654|CT45A6	ENSG00000278289|ENST00000620654|CT45A6	MULTI-MSMS	A375_MHC_IP_R2	2	453.0084533691406	3	452.60877	1354.80448	-0.5749	-0.00026021	-0.41392	-0.00018734	-0.98882	-0.00044755	452.60861836954626	20.143	0.45819	20.753	20.499	20.958	0.61029					22	8	3	0	0	0	0.11968	1	6249	6249		63.555	36.427	1	2569400			42669	9712	31314	31564	41610	41610					0.1412720205421465
REIPQAERY	9	Unmodified	_REIPQAERY_					0	0	0		ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1	ENSG00000198561|ENST00000399050|CTNND1	ENSG00000198561|ENST00000399050|CTNND1	MULTI-MSMS	A375_MHC_IP_R2	2	581.7037963867188	2	581.304187	1160.59382	-0.66433	-0.00038618	-0.31333	-0.00018214	-0.97766	-0.00056832	581.3039649921412	20.373	0.86517	20.983	20.701	21.566	0.61029					39	16	3	0	0	0	0.68046	1	6306	6306		8.7454	0	1	2847000			42670	9283	31315	31565	41611	41611					0.01994744732178333
REIPQAERY	9	Unmodified	_REIPQAERY_					0	0	0		ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1	ENSG00000198561|ENST00000399050|CTNND1	ENSG00000198561|ENST00000399050|CTNND1	MULTI-MSMS	A375_MHC_IP_R2	2	388.2717590332031	3	387.871883	1160.59382	-0.47552	-0.00018444	0.56699	0.00021992	0.091465	3.5477E-05	387.87205470876717	20.403	0.76309	21.013	20.803	21.566	0.61029					34	14	3	0	0	0	0.28079	1	6366	6366		30.431	16.261	1	1821200			42671	9283	31315	31565	41612	41612					0.01994744732178333
REIQAQNFF	9	Unmodified	_REIQAQNFF_					0	0	0		ENST00000498022.1_1_2:71304672-71305635:+|nuORF;ENSG00000124357|ENST00000244204|NAGK;nc|ENSG00000124357|Q9UJ70-2|NAGK	ENST00000498022.1_1_2:71304672-71305635:+|nuORF	ENST00000498022.1_1_2:71304672-71305635:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	576.6720581054688	2	576.793455	1151.57236	-0.31137	-0.0001796	0.043475	2.5076E-05	-0.2679	-0.00015452	576.7933772476717	65.743	0.56013	65.743	65.462	66.022	0					18	10	2	0	0	0	0.72623	1	23881	23881		18.373	3.5348	1	1993800			42672	3895	31316	31566	41613	41613					0.002633597034673585
REIQAQNFF	9	Unmodified	_REIQAQNFF_					0	0	0		ENST00000498022.1_1_2:71304672-71305635:+|nuORF;ENSG00000124357|ENST00000244204|NAGK;nc|ENSG00000124357|Q9UJ70-2|NAGK	ENST00000498022.1_1_2:71304672-71305635:+|nuORF	ENST00000498022.1_1_2:71304672-71305635:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	576.793455	1151.57236	-0.1939	-0.00011184	-0.18948	-0.00010929	-0.38339	-0.00022114	576.7931726643731	64.993	0.50715	65.731	65.41	65.918	0.73812	-0.0059624	-0.00013195	NaN	18.373	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2508600			42673	3895	31316	31566							0.002633597034673585
REIQDEELKKF	11	Unmodified	_REIQDEELKKF_					0	0	0		nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF;ENSG00000242802|ENST00000649063|AP5Z1;AP5Z1|p.S100Kfs*25|1|0.15|ENSG00000242802|chr7:4781685-4781686|-/A|frameshift_variant	nc|ENSG00000242802|O43299-2|AP5Z1	nc|ENSG00000242802|O43299-2|AP5Z1	MULTI-MSMS	A375_MHC_IP_R1	1	479.3239440917969	3	478.924424	1433.75144	-0.79231	-0.00037946	0.18957	9.0789E-05	-0.60274	-0.00028867	479.2588712742077	30.011	0.55353	30.011	29.798	30.351	0					22	10	3	0	0	0	0.0010373	1	9489	9489		81.552	73.265	1	13047000			42674	9803	31317	31567	41614	41614					0.05191779480878722
REIQDEELKKF	11	Unmodified	_REIQDEELKKF_					0	0	0		nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF;ENSG00000242802|ENST00000649063|AP5Z1;AP5Z1|p.S100Kfs*25|1|0.15|ENSG00000242802|chr7:4781685-4781686|-/A|frameshift_variant	nc|ENSG00000242802|O43299-2|AP5Z1	nc|ENSG00000242802|O43299-2|AP5Z1	MULTI-MSMS	A375_MHC_IP_R2	2	479.3239440917969	3	478.924424	1433.75144	-1.3693	-0.00065581	0.39419	0.00018878	-0.97515	-0.00046702	478.9245717465454	29.308	0.55495	30.007	29.78	30.335	0.69872					23	10	3	0	0	0	0.00021903	1	10244	10244		103.13	88.957	1	14539000			42675	9803	31317	31567	41615	41615					0.05191779480878722
REIQDVRF	8	Unmodified	_REIQDVRF_					0	0	0			REV__HRG|p.R179Q|1|0.39|ENSG00000113905|chr3:186671767-186671767|G/A|missense_variant	REV__HRG|p.R179Q|1|0.39|ENSG00000113905|chr3:186671767-186671767|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	532.6744384765625	2	531.788173	1061.56179	-0.72684	-0.00038652	0.063856	3.3958E-05	-0.66298	-0.00035257	531.7881830289224	46.665	0.60656	46.665	46.345	46.952	0					31	11	4	0	0	0	0.75389	1	16420	16420		19.257	3.4098	1	20284000	+		42676	26757	31318	31568	41616	41616					0.03347377049021816
REIREENKLY	10	Unmodified	_REIREENKLY_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	A375_MHC_IP_R1	1	450.9769287109375	3	450.577247	1348.70991	0.10349	4.6632E-05	-0.6609	-0.00029779	-0.5574	-0.00025115	450.5770355361889	21.53	0.65921	21.53	21.098	21.757	0					37	12	4	0	0	0	0.14143	1	5641	5641		48.561	37.662	1	19316000			42677	1407	31319	31569	41617	41617					0.0495064351223391
REIREENKLY	10	Unmodified	_REIREENKLY_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	A375_MHC_IP_R1	1	450.97723388671875	3	450.577247	1348.70991	-0.070801	-3.1901E-05	-0.35245	-0.0001588	-0.42325	-0.00019071	450.5770788295962	23.1	0.45258	23.1	22.723	23.176	0					9	8	2	0	0	0	0.69695	1	6306	6306		8.7518	0.80638	1	5738800			42678	1407	31319	31569	41618	41618					0.0495064351223391
REIREENKLY	10	Unmodified	_REIREENKLY_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	A375_MHC_IP_R2	2	450.9466857910156	3	450.577247	1348.70991	-0.59585	-0.00026848	-0.070059	-3.1567E-05	-0.66591	-0.00030004	450.577182725039	19.882	0.70811	20.492	20.044	20.752	0.61029					39	13	4	0	0	0	0.27133	1	6083	6083		30.431	15.594	1	16527000			42679	1407	31319	31569	41619	41619					0.0495064351223391
REIRWRLWKAH	11	Unmodified	_REIRWRLWKAH_					0	0	0		nc|ENSG00000237149|A6NEH8|ZNF503-AS2;ENST00000466942.2_1_10:77161903-77167502:+|nuORF;ENST00000425916.4_1_10:77162993-77167502:+|nuORF;ENST00000491557.2_1_10:77163552-77167502:+|nuORF	nc|ENSG00000237149|A6NEH8|ZNF503-AS2	nc|ENSG00000237149|A6NEH8|ZNF503-AS2	MSMS	A375_MHC_IP_R1	1	517.699462890625	3	517.632021	1549.87423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.072	1	85.072	84.572	85.572	0								0	0	0	0.16339	1	31174	31174		0.36667	0	1				42680	11799	31320	31570	41620	41620					0.12129125513502004
REISAILKY	9	Unmodified	_REISAILKY_					0	0	0		ENST00000511963.5_1_5:10286382-10290874:-|nuORF;ENSG00000164237|ENST00000296658|CMBL	ENST00000511963.5_1_5:10286382-10290874:-|nuORF	ENST00000511963.5_1_5:10286382-10290874:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	547.224365234375	2	546.824224	1091.63389	-0.43852	-0.00023979	-0.11901	-6.5075E-05	-0.55752	-0.00030487	546.8241121218758	51.222	1.17	51.222	50.915	52.085	0					48	22	3	0	0	0	0.11849	1	18133	18133		70.332	7.7593	1	38499000			42681	6806	31321	31571	41621	41621					0.09174291402746348
REISYLKKL	9	Unmodified	_REISYLKKL_					0	0	0		ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	A375_MHC_IP_R1	1	384.3045349121094	3	383.904524	1148.69174	0.12424	4.7697E-05	0.19906	7.6419E-05	0.3233	0.00012412	383.9045444616657	32.358	0.50702	32.358	32.127	32.634	0					27	9	4	0	0	0	0.13192	2	10428	10428;10454		44.945	14.513	1	30042000			42682	5434	31322	31572	41622;41623	41622					0.1233455332817357
REISYLKKL	9	Unmodified	_REISYLKKL_					0	0	0		ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	A375_MHC_IP_R2	2	384.3042907714844	3	383.904524	1148.69174	-0.13642	-5.2373E-05	0.19868	7.6276E-05	0.062263	2.3903E-05	383.90457693370075	31.452	0.61427	32.17	31.872	32.486	0.71857					29	11	4	0	0	0	0.043891	2	11098	11098;11145		66.683	27.47	1	23512000			42683	5434	31322	31572	41624;41625	41624					0.1233455332817357
REKDNGIRPPS	11	Unmodified	_REKDNGIRPPS_					0	0	0		ENST00000567019.1_1_15:43489502-43501706:-|nuORF;nc|ENSG00000166947|P16452-3|EPB42;ENSG00000166947|ENST00000441366|EPB42;nc|ENSG00000166947|P16452-2|EPB42	ENST00000567019.1_1_15:43489502-43501706:-|nuORF	ENST00000567019.1_1_15:43489502-43501706:-|nuORF	MSMS	A375_MHC_IP_R2	2	634.85498046875	2	634.838925	1267.6633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.007	1	96.758	96.258	97.258	0.75045								0	0	0	0.16232	1	36460	36460		6.6304	2.3011	1				42684	7137	31323	31573	41626	41626					0.04017203680950843
REKEDGAFSF	10	Unmodified	_REKEDGAFSF_					0	0	0		ENST00000440760.5_1_2:27594325-27599583:+|nuORF;nc|ENSG00000115234|Q15036-2|SNX17;ENSG00000115234|ENST00000233575|SNX17	ENST00000440760.5_1_2:27594325-27599583:+|nuORF	ENST00000440760.5_1_2:27594325-27599583:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	593.6795654296875	2	593.280377	1184.5462	-0.23979	-0.00014226	-0.40278	-0.00023896	-0.64256	-0.00038122	593.2798863294975	40.532	0.5593	40.532	40.203	40.762	0					23	10	4	0	0	0	0.10198	1	13923	13923		63.227	21.388	1	7936400			42685	3286	31324	31574	41627	41627					-0.03868954258678059
REKEDGAFSF	10	Unmodified	_REKEDGAFSF_					0	0	0		ENST00000440760.5_1_2:27594325-27599583:+|nuORF;nc|ENSG00000115234|Q15036-2|SNX17;ENSG00000115234|ENST00000233575|SNX17	ENST00000440760.5_1_2:27594325-27599583:+|nuORF	ENST00000440760.5_1_2:27594325-27599583:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	395.94000244140625	3	395.85601	1184.5462	0.065538	2.5943E-05	0.20937	8.2879E-05	0.2749	0.00010882	395.85603092588485	40.57	0.5585	40.57	40.254	40.813	0					23	10	3	0	0	0	0.74574	1	13937	13937		33.821	10.806	1	5556500			42686	3286	31324	31574	41628	41628					-0.03868954258678059
REKEDGAFSF	10	Unmodified	_REKEDGAFSF_					0	0	0		ENST00000440760.5_1_2:27594325-27599583:+|nuORF;nc|ENSG00000115234|Q15036-2|SNX17;ENSG00000115234|ENST00000233575|SNX17	ENST00000440760.5_1_2:27594325-27599583:+|nuORF	ENST00000440760.5_1_2:27594325-27599583:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	593.6798095703125	2	593.280377	1184.5462	-0.60264	-0.00035753	-0.30374	-0.0001802	-0.90638	-0.00053774	593.2802184432652	39.681	0.50751	40.455	40.219	40.727	0.77451					22	9	3	0	0	0	0.32528	2	14650	14650;14677		38.615	10.986	1	7004500			42687	3286	31324	31574	41629;41630	41629					-0.03868954258678059
REKEDGAFSF	10	Unmodified	_REKEDGAFSF_					0	0	0		ENST00000440760.5_1_2:27594325-27599583:+|nuORF;nc|ENSG00000115234|Q15036-2|SNX17;ENSG00000115234|ENST00000233575|SNX17	ENST00000440760.5_1_2:27594325-27599583:+|nuORF	ENST00000440760.5_1_2:27594325-27599583:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	396.256103515625	3	395.85601	1184.5462	-0.16544	-6.5491E-05	0.31106	0.00012313	0.14562	5.7644E-05	395.85610635781507	39.666	0.55804	40.441	40.169	40.727	0.77451					27	10	4	0	0	0	0.62699	1	14666	14666		43.477	23.851	1	7470100			42688	3286	31324	31574	41631	41631					-0.03868954258678059
REKILNRM	8	Unmodified	_REKILNRM_					0	0	0		tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1	tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1	tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1	MSMS	A375_MHC_IP_R2	2	353.9416198730469	3	353.874571	1058.60188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.372	1	21.991	21.491	22.491	0.61932								0	0	0	0.16876	1	6723	6723		12.241	0	1				42689	29864	31325	31575	41632	41632					0.07492600447972109
REKKMRNQSL	10	Unmodified	_REKKMRNQSL_					0	0	0		ENST00000309424.7_1_19:45912806-45913040:+|nuORF	ENST00000309424.7_1_19:45912806-45913040:+|nuORF	ENST00000309424.7_1_19:45912806-45913040:+|nuORF	MSMS	A375_MHC_IP_R2	2	645.3828735351562	2	645.35897	1288.70339	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.72	1	105.48	104.98	105.98	0.76308								0	0	0	0.1524	1	39615	39615		13.042	0	1				42690	10611	31326	31576	41633	41633					0.07058427079869034
REKRARQYHDE	11	Unmodified	_REKRARQYHDE_					0	0	0			REV__ENSG00000008853|ENST00000251822|RHOBTB2	REV__ENSG00000008853|ENST00000251822|RHOBTB2	MSMS	A375_MHC_IP_R2	2	744.1303100585938	2	744.376737	1486.73892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.6	1	118.21	117.71	118.71	0.60909								0	0	0	0.16265	1	44522	44522		4.897	1.3005	1		+		42691	16180	31327	31577	41634	41634					0.015021808612345922
REKVMRWFWTV	11	Unmodified	_REKVMRWFWTV_					0	0	0		ENST00000557688.1_1_14:75130600-75131628:-|nuORF;nc|ENSG00000119682|O15033-2|AREL1;ENST00000557401.5_1_14:75130603-75152321:-|nuORF;ENSG00000119682|ENST00000356357|AREL1	ENST00000557688.1_1_14:75130600-75131628:-|nuORF	ENST00000557688.1_1_14:75130600-75131628:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	513.655517578125	3	513.274734	1536.80237	-0.72756	-0.00037344	-2.8504	-0.001463	-3.5779	-0.0018365	513.6088707499872	42.22	1.0725	42.993	42.348	43.421	0.7724					29	20	2	0	0	0	0.73472	1	15564	15564		4.4062	1.5629	1	3997200			42692	3609	31328	31578	41635	41635					0.05544450044749283
RELDKVLQKF	10	Unmodified	_RELDKVLQKF_					0	0	0		ENST00000507575.5_1_5:177558043-177570729:+|nuORF;ENSG00000145916|ENST00000313386|RMND5B	ENST00000507575.5_1_5:177558043-177570729:+|nuORF	ENST00000507575.5_1_5:177558043-177570729:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	426.3189392089844	3	425.918834	1274.73467	0.32809	0.00013974	-0.31741	-0.00013519	0.010675	4.5468E-06	425.91869827228123	48.771	0.55729	48.771	48.476	49.033	0					29	10	4	0	0	0	0.010716	1	17220	17220		110.18	58.691	1	8679700			42693	5592	31329	31579	41636	41636					0.10829323385587486
RELDKVLQKF	10	Unmodified	_RELDKVLQKF_					0	0	0		ENST00000507575.5_1_5:177558043-177570729:+|nuORF;ENSG00000145916|ENST00000313386|RMND5B	ENST00000507575.5_1_5:177558043-177570729:+|nuORF	ENST00000507575.5_1_5:177558043-177570729:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	426.3184814453125	3	425.918834	1274.73467	-0.045796	-1.9505E-05	-0.41602	-0.00017719	-0.46181	-0.00019669	425.9186763317565	47.752	0.55733	48.513	48.275	48.833	0.76128					24	10	3	0	0	0	0.010716	1	17905	17905		110.18	58.691	1	7719200			42694	5592	31329	31579	41637	41637					0.10829323385587486
RELDLQRNY	9	Unmodified	_RELDLQRNY_					0	0	0		ENSG00000174004|ENST00000328557|NRROS	ENSG00000174004|ENST00000328557|NRROS	ENSG00000174004|ENST00000328557|NRROS	MULTI-MSMS	A375_MHC_IP_R1	1	402.9361877441406	3	402.879038	1205.61528	-0.68027	-0.00027407	-0.65657	-0.00026452	-1.3368	-0.00053858	403.21321100220047	30.726	0.45589	30.726	30.553	31.009	0					15	8	2	0	0	0	0.36834	1	9820	9820		19.626	8.727	1	1503000			42695	7847	31330	31580	41638	41638					0.020701297609093672
RELEAGSLVY	10	Unmodified	_RELEAGSLVY_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.V1071Wfs*3|1|0.24|ENSG00000173546|chr15:75687855-75687856|-/GCCAC|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	A375_MHC_IP_R1	1	569.2003173828125	2	568.800946	1135.58734	-0.39679	-0.00022569	0.27048	0.00015385	-0.12631	-7.1843E-05	568.8009840128834	58.512	0.86406	58.512	58.126	58.99	0					36	16	4	0	0	0	0.79938	1	20989	20989		33.445	14.083	1	9829600			42696	7807	31331	31581	41639	41639					0.024968067808231353
RELEEMRVTY	10	Unmodified	_RELEEMRVTY_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.G186E|1|0.41|ENSG00000127914|chr7:91993036-91993036|G/A|missense_variant	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	A375_MHC_IP_R1	1	442.95538330078125	3	442.555455	1324.64454	-0.10432	-4.6169E-05	-0.79325	-0.00035106	-0.89757	-0.00039722	442.55542496948925	43.838	0.30343	43.838	43.706	44.01	0					16	5	4	0	0	0	0.56699	1	15316	15316		23.34	17.148	1	2477500			42697	4108	31332	31582	41640	41640					-0.004800940051154612
RELEEMRVTY	10	Unmodified	_RELEEMRVTY_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.G186E|1|0.41|ENSG00000127914|chr7:91993036-91993036|G/A|missense_variant	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	A375_MHC_IP_R2	2	442.9552917480469	3	442.555455	1324.64454	-0.24723	-0.00010941	-0.10821	-4.7887E-05	-0.35544	-0.0001573	442.5554033065391	43.099	0.45575	43.871	43.623	44.079	0.7724					15	8	2	0	0	0	0.40956	1	16073	16073		33.593	24.842	1	3264200			42698	4108	31332	31582	41641	41641					-0.004800940051154612
RELEGKTGF	9	Unmodified	_RELEGKTGF_					0	0	0		nc|ENSG00000088992|Q96BS2-2|TESC;ENSG00000088992|ENST00000335209|TESC;nc|ENSG00000088992|Q96BS2-3|TESC	nc|ENSG00000088992|Q96BS2-2|TESC	nc|ENSG00000088992|Q96BS2-2|TESC	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1741943359375	2	518.774731	1035.53491	-0.72329	-0.00037523	0.030219	1.5677E-05	-0.69307	-0.00035955	518.7747458516136	24.163	1.062	24.163	23.991	25.053	0					45	20	3	0	0	0	0.040539	1	6769	6769		100.71	46.876	1	119520000			42699	14495	31333	31583	41642	41642					0.018562684378593985
RELEGKTGF	9	Unmodified	_RELEGKTGF_					0	0	0		nc|ENSG00000088992|Q96BS2-2|TESC;ENSG00000088992|ENST00000335209|TESC;nc|ENSG00000088992|Q96BS2-3|TESC	nc|ENSG00000088992|Q96BS2-2|TESC	nc|ENSG00000088992|Q96BS2-2|TESC	MULTI-SECPEP	A375_MHC_IP_R2	2	519.17431640625	2	518.774731	1035.53491	-0.99524	-0.00051631	-0.080116	-4.1562E-05	-1.0754	-0.00055787	518.7747013008136	23.424	0.45484	24.054	23.878	24.333	0.63014					18	8	3	0	0	0	0.040539	1	7532	7532		100.71	49.079	1	83431000			42700	14495	31333	31583	41643	41643					0.018562684378593985
RELEGKTGF	9	Unmodified	_RELEGKTGF_					0	0	0		nc|ENSG00000088992|Q96BS2-2|TESC;ENSG00000088992|ENST00000335209|TESC;nc|ENSG00000088992|Q96BS2-3|TESC	nc|ENSG00000088992|Q96BS2-2|TESC	nc|ENSG00000088992|Q96BS2-2|TESC	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1744995117188	2	518.774731	1035.53491	-0.94644	-0.00049099	-0.69687	-0.00036152	-1.6433	-0.00085251	518.7748121936744	23.984	0.66262	24.614	24.333	24.996	0.63014					23	12	3	0	0	0	0.14554	1	7813	7813		49.527	27.99	1	11163000			42701	14495	31333	31583	41644	41644					0.018562684378593985
RELEKDMHY	9	Unmodified	_RELEKDMHY_					0	0	0		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-MSMS	A375_MHC_IP_R2	2	407.88311767578125	3	407.529129	1219.56556	-0.27125	-0.00011054	0.15147	6.1729E-05	-0.11978	-4.8813E-05	407.5291289964592	19.357	0.50714	19.96	19.683	20.19	0.60308					16	9	2	0	0	0	0.10518	1	5988	5988		49.742	39.591	1	4117700			42702	1784	31334	31584	41645	41645					-0.0354432123940569
RELEKDMHYY	10	Unmodified	_RELEKDMHYY_					0	0	0		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-MSMS	A375_MHC_IP_R1	1	462.2831115722656	3	461.883572	1382.62889	-0.54236	-0.00025051	-0.27539	-0.0001272	-0.81775	-0.0003777	461.8835423579841	26.753	1.0082	26.753	26.423	27.432	0					52	19	6	0	0	0	0.011677	1	7976	7976		113.99	94.376	1	117810000			42703	1784	31335	31585	41646	41646					-0.04712380522141757
RELEKDMHYY	10	Unmodified	_RELEKDMHYY_					0	0	0		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-MSMS	A375_MHC_IP_R1	1	693.2229614257812	2	692.321719	1382.62889	-0.92924	-0.00064333	-0.14451	-0.00010005	-1.0738	-0.00074338	692.3217138196051	26.702	0.30298	26.702	26.575	26.878	0					13	5	3	0	0	0	0.72634	1	8041	8041		1.1933	0	1	4698000			42704	1784	31335	31585	41647	41647					-0.04712380522141757
RELEKDMHYY	10	Unmodified	_RELEKDMHYY_					0	0	0		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-SECPEP	A375_MHC_IP_R1	1	461.6791687011719	3	461.883572	1382.62889	-0.38965	-0.00017997	-0.079636	-3.6783E-05	-0.46929	-0.00021676	462.21779862882664	27.783	0.40426	27.783	27.482	27.887	0					10	7	2	0	0	0	0.93733	1	8463	8463		5.4027	4.9482	1	1034700			42705	1784	31335	31585	41648	41648					-0.04712380522141757
RELEKDMHYY	10	Unmodified	_RELEKDMHYY_					0	0	0		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-SECPEP	A375_MHC_IP_R2	2	462.28350830078125	3	461.883572	1382.62889	-0.9145	-0.00042239	-0.0021574	-9.9648E-07	-0.91666	-0.00042339	461.88367792351056	26.119	1.1193	26.779	26.398	27.517	0.65992					61	21	6	0	0	0	0.013248	1	8779	8779		133.12	103.83	1	144360000			42706	1784	31335	31585	41649	41649					-0.04712380522141757
RELEKDMHYY	10	Oxidation (M)	_RELEKDM(Oxidation (M))HYY_		RELEKDM(1)HYY		RELEKDM(72)HYY	0	0	1		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-SECPEP	A375_MHC_IP_R1	1	467.6150207519531	3	467.21521	1398.6238	-0.32309	-0.00015095	-0.15289	-7.1435E-05	-0.47598	-0.00022239	467.2152522781279	19.852	0.7097	19.852	19.471	20.18	0					56	13	6	0	0	0	0.23508	1	4951	4951		72.276	51.695	1	130570000			42707	1784	31335	31586	41650	41650		60			-0.05956684384773325
RELEKDMHYY	10	Oxidation (M)	_RELEKDM(Oxidation (M))HYY_		RELEKDM(1)HYY		RELEKDM(72)HYY	0	0	1		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-MSMS	A375_MHC_IP_R2	2	467.6146240234375	3	467.21521	1398.6238	-0.97357	-0.00045487	0.10131	4.7332E-05	-0.87226	-0.00040753	467.21537607674856	21.59	2.7482	22.21	21.726	24.474	0.61932					144	53	6	0	0	0	0.062809	1	6793	6793		72.276	50.167	1	105800000			42708	1784	31335	31586	41651	41651		60			-0.05956684384773325
RELEKDMHYY	10	Oxidation (M)	_RELEKDM(Oxidation (M))HYY_		RELEKDM(1)HYY		RELEKDM(61)HYY	0	0	1		ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENSG00000155876|ENST00000380527|RRAGA;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF	ENSG00000083750|ENST00000374941|RRAGB	ENSG00000083750|ENST00000374941|RRAGB	MULTI-SECPEP	A375_MHC_IP_R2	2	466.9596252441406	3	467.21521	1398.6238	-0.90283	-0.00042182	-0.22768	-0.00010638	-1.1305	-0.00052819	467.21520336490335	19.005	0.48264	19.608	19.452	19.935	0.60308					29	9	6	0	0	0	0.25713	1	5752	5752		60.943	43.501	1	240450000			42709	1784	31335	31586	41652	41652		60			-0.05956684384773325
RELEKRDYN	9	Unmodified	_RELEKRDYN_					0	0	0			REV__nc|ENSG00000131626|Q13136-2|PPFIA1	REV__nc|ENSG00000131626|Q13136-2|PPFIA1	MULTI-SECPEP	A375_MHC_IP_R1	1	407.9292907714844	3	408.210676	1221.6102	0.0040258	1.6434E-06	-0.12204	-4.9816E-05	-0.11801	-4.8173E-05	408.21069236837445	20.863	0.51194	20.863	20.536	21.048	0					14	9	2	0	0	0	0.73008	1	5302	5302		12.175	5.1377	1	810650	+		42710	18614	31336	31587	41653	41653					0.008258258983005362
RELEKVLHKF	10	Unmodified	_RELEKVLHKF_					0	0	0		nc|ENSG00000153561|Q9H871-2|RMND5A;ENSG00000153561|ENST00000283632|RMND5A	nc|ENSG00000153561|Q9H871-2|RMND5A	nc|ENSG00000153561|Q9H871-2|RMND5A	MULTI-SECPEP	A375_MHC_IP_R1	1	433.2850036621094	3	433.590828	1297.75066	-0.41379	-0.00017942	-0.026856	-1.1644E-05	-0.44065	-0.00019106	433.59079572323986	32.672	0.40217	32.672	32.485	32.887	0					12	7	2	0	0	0	0.88974	1	10559	10559		22.109	13.133	1	1726600			42711	6037	31337	31588	41654	41654					0.11369029622505877
RELEKVLHKF	10	Unmodified	_RELEKVLHKF_					0	0	0		nc|ENSG00000153561|Q9H871-2|RMND5A;ENSG00000153561|ENST00000283632|RMND5A	nc|ENSG00000153561|Q9H871-2|RMND5A	nc|ENSG00000153561|Q9H871-2|RMND5A	MULTI-MATCH	A375_MHC_IP_R2	2		3	433.590828	1297.75066	-0.27606	-0.0001197	-0.70565	-0.00030596	-0.98171	-0.00042566	433.5906937655236	31.583	0.35764	32.318	32.093	32.451	0.73502	-0.17672	-0.0005084	NaN	22.109	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1605600			42712	6037	31337	31588							0.11369029622505877
RELFILWGL	9	Unmodified	_RELFILWGL_					0	0	0		ENST00000566258.1_1_15:34846105-34875766:-|nuORF	ENST00000566258.1_1_15:34846105-34875766:-|nuORF	ENST00000566258.1_1_15:34846105-34875766:-|nuORF	MSMS	A375_MHC_IP_R2	2	382.9313049316406	3	382.893848	1145.65972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.972	1	21.583	21.083	22.083	0.61029								0	0	0	0.15119	1	6569	6569		19.626	5.2206	1				42713	13559	31338	31589	41655	41655					0.09271185645025071
RELFLLGQHY	10	Unmodified	_RELFLLGQHY_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-MSMS	A375_MHC_IP_R1	1	426.2994689941406	3	425.899662	1274.67716	-0.0053686	-2.2865E-06	1.303	0.00055496	1.2977	0.00055267	425.90049904554684	72.539	0.86147	72.539	72.22	73.082	0					32	16	3	0	0	0	0.46263	1	26402	26402		30.431	18.204	1	3469500			42714	9382	31339	31590	41656	41656					0.05080481180038987
RELFLLGQHY	10	Unmodified	_RELFLLGQHY_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-MSMS	A375_MHC_IP_R1	1	638.745361328125	2	638.345855	1274.67716	-0.55538	-0.00035453	0.058575	3.7391E-05	-0.49681	-0.00031713	638.3454012652927	72.536	0.35482	72.536	72.321	72.676	0					13	6	3	0	0	0	0.58344	1	26426	26426		30.703	16.797	1	1971700			42715	9382	31339	31590	41657	41657					0.05080481180038987
RELFLLGQHY	10	Unmodified	_RELFLLGQHY_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-MSMS	A375_MHC_IP_R2	2	638.7451171875	2	638.345855	1274.67716	-1.0786	-0.00068853	0.20839	0.00013303	-0.87022	-0.0005555	638.3458199064712	71.555	0.35419	72.289	72.111	72.465	0.73421					11	6	2	0	0	0	0.69723	1	27170	27170		19.626	10.243	1	3507100			42716	9382	31339	31590	41658	41658					0.05080481180038987
RELGCGRLVR	10	Unmodified	_RELGCGRLVR_					0	0	0			REV__ENST00000339007.3_1_19:18507576-18507849:-|nuORF	REV__ENST00000339007.3_1_19:18507576-18507849:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	387.62384033203125	3	386.888991	1157.64514	-0.48659	-0.00018826	0.10894	4.2149E-05	-0.37765	-0.00014611	386.8889293713304	56.506	0.76498	57.256	56.745	57.51	0.75014					30	14	3	0	0	0	0.70651	1	21262	21262		5.4027	0	1	6843100	+		42717	23706	31340	31591	41659	41659					0.07262790225263416
RELLDVKKKF	10	Unmodified	_RELLDVKKKF_					0	0	0		ENSG00000137831|ENST00000322954|UACA;nc|ENSG00000137831|Q9BZF9-2|UACA	ENSG00000137831|ENST00000322954|UACA	ENSG00000137831|ENST00000322954|UACA	MULTI-MSMS	A375_MHC_IP_R1	1	425.97161865234375	3	425.930962	1274.77106	-0.09387	-3.9982E-05	-0.2246	-9.5664E-05	-0.31847	-0.00013565	425.93082081510363	28.719	0.35369	28.719	28.541	28.895	0					14	6	3	0	0	0	0.17118	2	8882	8882;8932		52.193	35.627	1	3327200			42718	4925	31341	31592	41660;41661	41660					0.1446620028232246
RELLDVKKKF	10	Unmodified	_RELLDVKKKF_					0	0	0		ENSG00000137831|ENST00000322954|UACA;nc|ENSG00000137831|Q9BZF9-2|UACA	ENSG00000137831|ENST00000322954|UACA	ENSG00000137831|ENST00000322954|UACA	MULTI-MSMS	A375_MHC_IP_R2	2	426.3304748535156	3	425.930962	1274.77106	-0.20054	-8.5417E-05	-0.53359	-0.00022727	-0.73413	-0.00031269	425.93066643973316	27.849	0.30395	28.528	28.351	28.655	0.67857					11	5	3	0	0	0	0.51635	1	9599	9599		27.129	21.726	1	3153600			42719	4925	31341	31592	41662	41662					0.1446620028232246
RELLEIVKKNF	11	Unmodified	_RELLEIVKKNF_					0	0	0		nc|ENSG00000168906|P31153-2|MAT2A;ENSG00000168906|ENST00000306434|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	MULTI-MSMS	A375_MHC_IP_R1	1	464.01318359375	3	463.613522	1387.81874	-0.27103	-0.00012565	-0.11266	-5.223E-05	-0.38369	-0.00017788	463.6133566138698	61.112	0.45951	61.112	60.871	61.331	0					17	8	3	0	0	0	0.40026	1	22044	22044		38.963	33.095	1	2810600			42720	7356	31342	31593	41663	41663					0.1403385448249992
RELLEIVKKNF	11	Unmodified	_RELLEIVKKNF_					0	0	0		nc|ENSG00000168906|P31153-2|MAT2A;ENSG00000168906|ENST00000306434|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	MULTI-MSMS	A375_MHC_IP_R2	2	464.3476257324219	3	463.613522	1387.81874	-0.90201	-0.00041818	0.36443	0.00016895	-0.53758	-0.00024923	463.6135357761742	60.068	0.40477	60.816	60.603	61.008	0.74714					20	7	3	0	0	0	0.17687	1	22753	22753		56.91	46.894	1	3470600			42721	7356	31342	31593	41664	41664					0.1403385448249992
RELLFRERKQL	11	Unmodified	_RELLFRERKQL_					0	0	0			REV__nc|ENSG00000163006|Q96M89-2|CCDC138	REV__nc|ENSG00000163006|Q96M89-2|CCDC138	MULTI-MSMS	A375_MHC_IP_R2	2	372.9365539550781	4	372.725584	1486.87323	0.17338	6.4623E-05	-0.30617	-0.00011412	-0.13279	-4.9494E-05	372.9761614258184	23.728	0.25419	24.358	24.18	24.435	0.63014					6	4	2	0	0	0	0.73672	1	7647	7647		1.0136	0.60531	1	1617800	+		42722	20328	31343	31594	41665	41665					0.14926866353926016
RELLFRERKQL	11	Unmodified	_RELLFRERKQL_					0	0	0			REV__nc|ENSG00000163006|Q96M89-2|CCDC138	REV__nc|ENSG00000163006|Q96M89-2|CCDC138	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		4	372.725584	1486.87323	0.17338	6.4623E-05	-0.30617	-0.00011412	-0.13279	-4.9494E-05	372.9761614258184	23.728	0.25419	24.358	24.18	24.435	0.63014	-0.044918	-0.00036255	NaN	1.0136	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1617800	+		42723	20328	31343	31594							0.14926866353926016
RELLPVKKF	9	Unmodified	_RELLPVKKF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000436565.2_1_13:77559963-77560284:+|nuORF;ENST00000477802.1_1_1:182828020-182829385:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	A375_MHC_IP_R1	1	377.641357421875	3	377.241248	1128.70191	-0.0097885	-3.6926E-06	0.53544	0.00020199	0.52566	0.0001983	377.2414568811248	38.293	2.2889	38.293	37.71	39.999	0					63	44	2	0	0	0	0.063448	3	12915	12915;13082;13097		59.052	28.349	1	305370000			42724	4716	31344	31595	41666;41667;41668	41666					0.14271161053420656
RELLPVKKF	9	Unmodified	_RELLPVKKF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000436565.2_1_13:77559963-77560284:+|nuORF;ENST00000477802.1_1_1:182828020-182829385:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	A375_MHC_IP_R1	1	565.7581787109375	2	565.358234	1128.70191	-0.77699	-0.00043928	0.58534	0.00033092	-0.19166	-0.00010835	565.3585839869431	38.293	0.35661	38.293	38.118	38.475	0					11	6	2	0	0	0	0.50484	1	12972	12972		28.495	0	1	6173100			42725	4716	31344	31595	41669	41669					0.14271161053420656
RELLPVKKF	9	Unmodified	_RELLPVKKF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000436565.2_1_13:77559963-77560284:+|nuORF;ENST00000477802.1_1_1:182828020-182829385:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	A375_MHC_IP_R2	2	377.6413269042969	3	377.241248	1128.70191	-0.31755	-0.00011979	0.24522	9.2508E-05	-0.072323	-2.7283E-05	377.2413503728024	37.274	1.1245	38.045	37.767	38.891	0.7709					54	21	3	0	0	0	0.021859	2	13578	13578;13770		81.915	34.321	1	260560000			42726	4716	31344	31595	41670;41671	41670					0.14271161053420656
RELLRIADKF	10	Unmodified	_RELLRIADKF_					0	0	0		ENST00000493170.1_1_1:173684720-173703518:+|nuORF;ENSG00000076321|ENST00000209884|KLHL20	ENST00000493170.1_1_1:173684720-173703518:+|nuORF	ENST00000493170.1_1_1:173684720-173703518:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	421.3188781738281	3	420.918945	1259.73501	-0.091273	-3.8418E-05	-0.10323	-4.3453E-05	-0.19451	-8.1872E-05	420.91884054968506	53.174	0.55695	53.174	52.897	53.453	0					24	10	3	0	0	0	0.3329	1	18919	18919		38.161	21.886	1	6464300			42727	1634	31345	31596	41672	41672					0.11552743105448826
RELLRIADKF	10	Unmodified	_RELLRIADKF_					0	0	0		ENST00000493170.1_1_1:173684720-173703518:+|nuORF;ENSG00000076321|ENST00000209884|KLHL20	ENST00000493170.1_1_1:173684720-173703518:+|nuORF	ENST00000493170.1_1_1:173684720-173703518:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	421.3187255859375	3	420.918945	1259.73501	-0.46833	-0.00019713	0.0040757	1.7156E-06	-0.46426	-0.00019542	420.91890477483065	52.139	0.50686	52.891	52.677	53.184	0.75225					19	9	3	0	0	0	0.1863	1	19658	19658		50.648	29.777	1	6426800			42728	1634	31345	31596	41673	41673					0.11552743105448826
RELLWHGFA	9	Unmodified	_RELLWHGFA_					0	0	0		ENSG00000164751|ENST00000357039|PEX2	ENSG00000164751|ENST00000357039|PEX2	ENSG00000164751|ENST00000357039|PEX2	MULTI-SECPEP	A375_MHC_IP_R2	2	377.4420166015625	3	376.869814	1127.58761	-0.22944	-8.6471E-05	-1.3125	-0.00049464	-1.5419	-0.00058111	376.869070032769	37.406	0.25475	38.177	37.968	38.223	0.7709					6	4	2	0	0	0	0.69507	1	13614	13614		13.615	6.0059	1	929650			42729	6876	31346	31597	41674	41674					0.02892271291329962
RELPAQKW	8	Unmodified	_RELPAQKW_					0	0	0		SLC3A2-GRAP2|2|fusion;nc|ENSG00000168003|P08195-5|SLC3A2;SLC3A2-GRAP2|1|fusion;SLC3A2-GRAP2|4|fusion;ENSG00000168003|ENST00000338663|SLC3A2;nc|ENSG00000168003|P08195-3|SLC3A2;SLC3A2-GRAP2|3|fusion;nc|ENSG00000168003|P08195|SLC3A2;nc|ENSG00000168003|P08195-4|SLC3A2	SLC3A2-GRAP2|2|fusion	SLC3A2-GRAP2|2|fusion	MULTI-SECPEP	A375_MHC_IP_R1	1	514.6869506835938	2	514.287808	1026.56106	-0.41053	-0.00021113	-0.96588	-0.00049674	-1.3764	-0.00070787	514.2872529649879	28.566	0.35509	28.566	28.39	28.745	0					9	6	2	0	0	0	0.83673	1	8850	8850		39.95	25.111	1	3599700			42730	14753	31347	31598	41675	41675					0.048845823999727145
RELPEPLLTF	10	Unmodified	_RELPEPLLTF_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000526423.1_1_11:46700589-46702208:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	608.2422485351562	2	607.842613	1213.67067	-0.080727	-4.9069E-05	0.0040268	2.4477E-06	-0.0767	-4.6622E-05	607.8425515954671	107.72	0.91579	107.72	107.44	108.36	0					38	17	4	0	0	0	0.24526	1	39495	39495		67.081	0	1	15835000			42731	7942	31348	31599	41676	41676					0.07238543228640992
RELPEPLLTF	10	Unmodified	_RELPEPLLTF_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000526423.1_1_11:46700589-46702208:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MSMS	A375_MHC_IP_R2	2	608.4082641601562	2	607.842613	1213.67067	-0.49265	-0.00029945	-0.14457	-8.7874E-05	-0.63721	-0.00038733	607.8424928294218	106.85	0.76072	107.61	107.29	108.05	0.75977					41	14	4	0	0	0	0.70148	1	40471	40471		12.873	0	1	13975000			42732	7942	31348	31599	41677	41677					0.07238543228640992
RELPEPLMTF	10	Unmodified	_RELPEPLMTF_					0	0	0		nc|ENSG00000006740|Q17R89-2|ARHGAP44;nc|ENSG00000006740|Q17R89-3|ARHGAP44;ENSG00000006740|ENST00000379672|ARHGAP44;ENST00000576387.1_1_16:24960717-24966004:-|nuORF;ENST00000575656.5_1_16:24960717-24971282:-|nuORF;ENST00000466097.1_1_22:38042800-38046733:+|nuORF;nc|ENSG00000140750|Q68EM7-3|ARHGAP17;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B;ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1	nc|ENSG00000006740|Q17R89-2|ARHGAP44;ENSG00000099331|ENST00000682292|MYO9B;ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000099331|ENST00000682292|MYO9B	MULTI-MSMS	A375_MHC_IP_R1	1	617.220703125	2	616.820824	1231.62709	-0.35154	-0.00021684	-2.0894	-0.0012888	-2.4409	-0.0015056	616.8198036023039	99.387	0.50864	99.387	99.015	99.524	0					16	9	3	0	0	0	0.42595	2	36503	36429;36503		37.075	13.054	1	2394700			42733	2072;2114;928	31349	31600	41678;41679	41679					0.02054610459867945
RELPEPLMTF	10	Unmodified	_RELPEPLMTF_					0	0	0		nc|ENSG00000006740|Q17R89-2|ARHGAP44;nc|ENSG00000006740|Q17R89-3|ARHGAP44;ENSG00000006740|ENST00000379672|ARHGAP44;ENST00000576387.1_1_16:24960717-24966004:-|nuORF;ENST00000575656.5_1_16:24960717-24971282:-|nuORF;ENST00000466097.1_1_22:38042800-38046733:+|nuORF;nc|ENSG00000140750|Q68EM7-3|ARHGAP17;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B;ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1	nc|ENSG00000006740|Q17R89-2|ARHGAP44;ENSG00000099331|ENST00000682292|MYO9B;ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000099331|ENST00000682292|MYO9B	MULTI-MATCH	A375_MHC_IP_R2	2		2	616.820824	1231.62709	-0.60663	-0.00037418	-0.027859	-1.7184E-05	-0.63449	-0.00039137	616.8207280152074	98.467	0.56028	99.227	98.945	99.505	0.75977	-0.080128	0.00051634	NaN	37.075	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1635500			42734	2072;2114;928	31349	31600							0.02054610459867945
RELPNPLLTY	10	Unmodified	_RELPNPLLTY_					0	0	0		nc|ENSG00000134909|A7KAX9-2|ARHGAP32;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;ARHGAP31|p.R168Kfs*6|1|0.14|ENSG00000031081|chr3:119382358-119382383|CGCCCGGAACCTGGCCCTGGTGTGGG/-|frameshift_variant;ENST00000533509.1_1_11:128855854-128936700:-|nuORF;nc|ENSG00000004777|O14559-11|ARHGAP33;ENSG00000004777|ENST00000007510|ARHGAP33;nc|ENSG00000004777|O14559-10|ARHGAP33;ENSG00000031081|ENST00000264245|ARHGAP31;nc|ENSG00000134909|A7KAX9-3|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32;nc|ENSG00000004777|O14559-11|ARHGAP33;ENSG00000031081|ENST00000264245|ARHGAP31;nc|ENSG00000134909|A7KAX9-3|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-MSMS	A375_MHC_IP_R1	1	608.7398071289062	2	608.340238	1214.66592	-0.53341	-0.0003245	0.1558	9.478E-05	-0.37761	-0.00022972	608.3404426079825	85.793	0.91138	85.793	85.261	86.172	0					24	17	3	0	0	0	0.39901	1	31464	31464		34.222	26.066	1	4204500			42735	4625;1112;870;14613	31350	31601	41680	41680					0.06717659085893501
RELPNPLLTY	10	Unmodified	_RELPNPLLTY_					0	0	0		nc|ENSG00000134909|A7KAX9-2|ARHGAP32;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;ARHGAP31|p.R168Kfs*6|1|0.14|ENSG00000031081|chr3:119382358-119382383|CGCCCGGAACCTGGCCCTGGTGTGGG/-|frameshift_variant;ENST00000533509.1_1_11:128855854-128936700:-|nuORF;nc|ENSG00000004777|O14559-11|ARHGAP33;ENSG00000004777|ENST00000007510|ARHGAP33;nc|ENSG00000004777|O14559-10|ARHGAP33;ENSG00000031081|ENST00000264245|ARHGAP31;nc|ENSG00000134909|A7KAX9-3|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32;nc|ENSG00000004777|O14559-11|ARHGAP33;ENSG00000031081|ENST00000264245|ARHGAP31;nc|ENSG00000134909|A7KAX9-3|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-SECPEP	A375_MHC_IP_R2	2	608.739501953125	2	608.340238	1214.66592	-0.30841	-0.00018762	-0.19698	-0.00011983	-0.50539	-0.00030745	608.339843349195	84.939	1.0157	85.675	85.018	86.034	0.73601					30	19	3	0	0	0	0.63289	1	32269	32269		34.222	26.613	1	2662300			42736	4625;1112;870;14613	31350	31601	41681	41681					0.06717659085893501
RELPNYNKV	9	Unmodified	_RELPNYNKV_					0	0	0			REV__ENSG00000175344|ENST00000306901|CHRNA7	REV__ENSG00000175344|ENST00000306901|CHRNA7	MULTI-MSMS	A375_MHC_IP_R1	1	379.1399841308594	3	378.208495	1131.60366	0.72904	0.00027573	-0.25033	-9.4678E-05	0.4787	0.00018105	378.20832625034274	48.516	0.91115	48.516	48.173	49.084	0					41	17	4	0	0	0	0.73141	1	17002	17002		4.1895	4.1895	1	13173000	+		42737	21338	31351	31602	41682	41682					0.043119327375507055
RELSAPARLY	10	Unmodified	_RELSAPARLY_					0	0	0		ENST00000545932.5_1_12:108956374-108956593:+|nuORF;ENSG00000136003|ENST00000311893|ISCU	ENST00000545932.5_1_12:108956374-108956593:+|nuORF	ENST00000545932.5_1_12:108956374-108956593:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	588.7301635742188	2	588.330205	1174.64586	-0.43176	-0.00025401	0.2552	0.00015014	-0.17656	-0.00010387	588.3303454859425	39.547	0.40396	39.547	39.34	39.744	0					15	7	3	0	0	0	0.28986	1	13526	13526		40.725	8.6079	1	7891400			42738	4739	31352	31603	41683	41683					0.06551908145934249
RELSAPARLY	10	Unmodified	_RELSAPARLY_					0	0	0		ENST00000545932.5_1_12:108956374-108956593:+|nuORF;ENSG00000136003|ENST00000311893|ISCU	ENST00000545932.5_1_12:108956374-108956593:+|nuORF	ENST00000545932.5_1_12:108956374-108956593:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	392.9559631347656	3	392.555895	1174.64586	-0.060043	-2.357E-05	-0.13377	-5.251E-05	-0.19381	-7.6081E-05	392.55594232306197	39.567	0.65854	39.567	39.34	39.999	0					23	12	3	0	0	0	0.11994	1	13546	13546		44.945	28.67	1	6029500			42739	4739	31352	31603	41684	41684					0.06551908145934249
RELSAPARLY	10	Unmodified	_RELSAPARLY_					0	0	0		ENST00000545932.5_1_12:108956374-108956593:+|nuORF;ENSG00000136003|ENST00000311893|ISCU	ENST00000545932.5_1_12:108956374-108956593:+|nuORF	ENST00000545932.5_1_12:108956374-108956593:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	588.7294921875	2	588.330205	1174.64586	-0.87423	-0.00051433	0.11635	6.8449E-05	-0.75788	-0.00044588	588.330286404813	38.711	0.51145	39.486	39.3	39.812	0.77451					18	9	3	0	0	0	0.1298	1	14280	14280		57.249	24.944	1	5800400			42740	4739	31352	31603	41685	41685					0.06551908145934249
RELSAPARLY	10	Unmodified	_RELSAPARLY_					0	0	0		ENST00000545932.5_1_12:108956374-108956593:+|nuORF;ENSG00000136003|ENST00000311893|ISCU	ENST00000545932.5_1_12:108956374-108956593:+|nuORF	ENST00000545932.5_1_12:108956374-108956593:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	392.9556579589844	3	392.555895	1174.64586	-0.48708	-0.00019121	0.18856	7.4018E-05	-0.29852	-0.00011719	392.555984689578	38.764	0.71498	39.539	39.25	39.965	0.77451					24	13	3	0	0	0	0.83327	1	14279	14279		16.275	0	1	4278300			42741	4739	31352	31603	41686	41686					0.06551908145934249
RELSKFKSY	9	Unmodified	_RELSKFKSY_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;ENST00000461423.1_1_20:37137783-37175090:+|nuORF	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-SECPEP	A375_MHC_IP_R1	1	386.2766418457031	3	386.548629	1156.62406	0.35911	0.00013881	0.68056	0.00026307	1.0397	0.00040188	387.21673534394387	20.559	0.66353	20.559	20.129	20.793	0					22	12	3	0	0	0	0.58408	1	5301	5301		28.271	19.294	1	1442800			42742	7511	31353	31604	41687	41687					0.05201103397371298
RELSNRSVY	9	Unmodified	_RELSNRSVY_					0	0	0		nc|ENSG00000166535|A8K2U0-2|A2ML1;ENSG00000166535|ENST00000299698|A2ML1	nc|ENSG00000166535|A8K2U0-2|A2ML1	nc|ENSG00000166535|A8K2U0-2|A2ML1	MULTI-SECPEP	A375_MHC_IP_R2	2	375.57244873046875	3	375.2	1122.57817	-0.17809	-6.6818E-05	0.54672	0.00020513	0.36864	0.00013831	375.2004742222396	33.924	0.30313	34.677	34.45	34.753	0.75225					8	5	2	0	0	0	0.72623	1	12179	12179		13.615	0	1	1755500			42743	7087	31354	31605	41688	41688					0.02178458215144019
RELTAVVQKRF	11	Unmodified	_RELTAVVQKRF_					0	0	0		ENST00000529173.5_1_11:75110591-75112804:+|nuORF;ENST00000407940.1_1_6:7339375-7339741:-|nuORF;ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3	ENST00000529173.5_1_11:75110591-75112804:+|nuORF	ENST00000529173.5_1_11:75110591-75112804:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	450.0015869140625	3	449.601616	1345.78302	-0.16791	-7.5491E-05	-0.14083	-6.3319E-05	-0.30874	-0.00013881	449.60148646194847	33.317	0.5079	33.317	33.09	33.597	0					24	9	3	0	0	0	0.058008	1	10870	10870		77.813	67.497	1	10959000			42744	5796	31355	31606	41689	41689					0.12395817025480937
RELTAVVQKRF	11	Unmodified	_RELTAVVQKRF_					0	0	0		ENST00000529173.5_1_11:75110591-75112804:+|nuORF;ENST00000407940.1_1_6:7339375-7339741:-|nuORF;ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3	ENST00000529173.5_1_11:75110591-75112804:+|nuORF	ENST00000529173.5_1_11:75110591-75112804:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	450.00152587890625	3	449.601616	1345.78302	-0.33607	-0.0001511	-0.12513	-5.6261E-05	-0.46121	-0.00020736	449.6014967195592	32.37	0.45937	33.107	32.857	33.317	0.73691					23	8	4	0	0	0	0.1495	1	11506	11506		61.523	49.295	1	9500500			42745	5796	31355	31606	41690	41690					0.12395817025480937
RELVTRPE	8	Unmodified	_RELVTRPE_					0	0	0			REV__ENSG00000186193|ENST00000409687|SAPCD2	REV__ENSG00000186193|ENST00000409687|SAPCD2	MULTI-MSMS	A375_MHC_IP_R2	2	500.68243408203125	2	500.282723	998.550893	-0.57142	-0.00028587	0.50717	0.00025373	-0.064246	-3.2141E-05	500.28254467430327	122.63	1.7211	123	122.57	124.29	0.3766					56	33	3	0	0	0	0.77643	1	47741	47741		7.9102	0	1	76280000	+		42746	21955	31356	31607	41691	41691					0.051559746747557256
RELWISNHF	9	Unmodified	_RELWISNHF_					0	0	0			REV__ENSG00000123610|ENST00000243347|TNFAIP6	REV__ENSG00000123610|ENST00000243347|TNFAIP6	MULTI-MSMS	A375_MHC_IP_R1	1	401.26458740234375	3	401.208607	1200.60399	-0.57891	-0.00023226	-1.6746	-0.00067187	-2.2535	-0.00090414	401.20786266847296	23.786	0.81365	23.786	23.533	24.347	0					37	15	3	0	0	0	0.63811	1	6540	6540		8.1555	0.54658	1	22819000	+		42747	18253	31357	31608	41692	41692					0.011713524574133771
RELWIWLLLWL	11	Unmodified	_RELWIWLLLWL_					0	0	0			REV__ENST00000372476.7_1_1:43773103-43773491:+|nuORF	REV__ENST00000372476.7_1_1:43773103-43773491:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	771.3547973632812	2	770.955572	1539.89659	-0.83076	-0.00064048	-0.00086872	-6.6975E-07	-0.83163	-0.00064115	770.9553633919053	142.42	0.50502	142.42	142.08	142.59	0					19	9	3	0	0	0	0.73934	1	54618	54618		0	0	1	3655900	+		42748	24068	31358	31609	41693	41693					0.14823912138558626
RELWIWLLLWL	11	Unmodified	_RELWIWLLLWL_					0	0	0			REV__ENST00000372476.7_1_1:43773103-43773491:+|nuORF	REV__ENST00000372476.7_1_1:43773103-43773491:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	770.955572	1539.89659	-0.74329	-0.00057305	0.59321	0.00045734	-0.15008	-0.00011571	770.9557890841502	142.47	0.45938	142.51	142.18	142.64	0.030731	0.044648	0.00038426	NaN	0	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3026500	+		42749	24068	31358	31609							0.14823912138558626
REMDEQIRL	9	Unmodified	_REMDEQIRL_					0	0	0		ENST00000600996.1_1_19:42012510-42012810:+|nuORF;ENST00000413233.1_1_7:116612221-116612569:-|nuORF;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3	ENST00000600996.1_1_19:42012510-42012810:+|nuORF	ENST00000600996.1_1_19:42012510-42012810:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	595.70361328125	2	595.303329	1188.59211	-0.5595	-0.00033308	0.33785	0.00020112	-0.22166	-0.00013195	595.3036390641925	41.038	0.40316	41.038	40.863	41.266	0					17	7	3	0	0	0	0.52973	1	14149	14149		23.801	15.646	1	10272000			42750	11654	31359	31610	41694	41694					0.005353676519234796
REMDEQIRL	9	Unmodified	_REMDEQIRL_					0	0	0		ENST00000600996.1_1_19:42012510-42012810:+|nuORF;ENST00000413233.1_1_7:116612221-116612569:-|nuORF;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3	ENST00000600996.1_1_19:42012510-42012810:+|nuORF	ENST00000600996.1_1_19:42012510-42012810:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	397.6045837402344	3	397.204645	1188.59211	-0.28651	-0.0001138	0.82395	0.00032728	0.53744	0.00021347	397.20502591346144	41.068	0.75833	41.068	40.609	41.368	0					21	14	2	0	0	0	0.58126	1	14180	14180		31.636	18.021	1	3536600			42751	11654	31359	31610	41695	41695					0.005353676519234796
REMDEQIRL	9	Unmodified	_REMDEQIRL_					0	0	0		ENST00000600996.1_1_19:42012510-42012810:+|nuORF;ENST00000413233.1_1_7:116612221-116612569:-|nuORF;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3	ENST00000600996.1_1_19:42012510-42012810:+|nuORF	ENST00000600996.1_1_19:42012510-42012810:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	595.7031860351562	2	595.303329	1188.59211	-0.62328	-0.00037104	0.40854	0.0002432	-0.21474	-0.00012784	595.3036608329893	40.276	0.60797	41.051	40.727	41.335	0.77451					25	11	3	0	0	0	0.25658	1	14889	14889		42.312	27.064	1	8697400			42752	11654	31359	31610	41696	41696					0.005353676519234796
REMDEQIRL	9	Unmodified	_REMDEQIRL_					0	0	0		ENST00000600996.1_1_19:42012510-42012810:+|nuORF;ENST00000413233.1_1_7:116612221-116612569:-|nuORF;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3	ENST00000600996.1_1_19:42012510-42012810:+|nuORF	ENST00000600996.1_1_19:42012510-42012810:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	397.604736328125	3	397.204645	1188.59211	-0.16311	-6.479E-05	-0.20295	-8.0612E-05	-0.36606	-0.0001454	397.2046016110514	40.282	0.66051	41.056	40.777	41.438	0.77451					22	12	3	0	0	0	0.038567	1	14898	14898		68.76	44.796	1	6674100			42753	11654	31359	31610	41697	41697					0.005353676519234796
REMDEQIRL	9	Oxidation (M)	_REM(Oxidation (M))DEQIRL_		REM(1)DEQIRL		REM(43)DEQIRL	0	0	1		ENST00000600996.1_1_19:42012510-42012810:+|nuORF;ENST00000413233.1_1_7:116612221-116612569:-|nuORF;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3	ENST00000600996.1_1_19:42012510-42012810:+|nuORF	ENST00000600996.1_1_19:42012510-42012810:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	402.9361877441406	3	402.536283	1204.58702	-0.63206	-0.00025443	0.62089	0.00024993	-0.01117	-4.4963E-06	402.5365113738277	30.832	0.50598	30.832	30.603	31.109	0					14	9	2	0	0	0	0.34544	1	9820	9820		42.835	33.071	1	7093200			42754	11654	31359	31611	41698	41698		453			-0.007089362107080888
REMLYKLRRFY	11	Unmodified	_REMLYKLRRFY_					0	0	0			REV__ENSG00000261221|ENST00000568956|ZNF865	REV__ENSG00000261221|ENST00000568956|ZNF865	MSMS	A375_MHC_IP_R2	2	525.6806030273438	3	525.625656	1573.85514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.159	1	65.897	65.397	66.397	0.73811								0	0	0	0.16332	1	24705	24705		1.4551	0.12547	1		+		42755	22910	31360	31612	41699	41699					0.09116408107570351
REMNPNYTEF	10	Oxidation (M)	_REM(Oxidation (M))NPNYTEF_		REM(1)NPNYTEF		REM(51)NPNYTEF	0	0	1		ENSG00000082701|ENST00000264235|GSK3B;nc|ENSG00000082701|P49841-2|GSK3B;ENSG00000105723|ENST00000222330|GSK3A	ENSG00000082701|ENST00000264235|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	MULTI-MSMS	A375_MHC_IP_R1	1	659.181640625	2	658.782427	1315.5503	-0.37819	-0.00024915	-0.22959	-0.00015125	-0.60778	-0.0004004	658.7822716168796	40.579	0.60874	40.579	40.254	40.863	0					23	11	3	0	0	0	0.17879	1	13949	13949		51.415	15.288	1	3226500			42756	1765	31361	31613	41700	41700		57			-0.09485232827296386
REMNPNYTEF	10	Oxidation (M)	_REM(Oxidation (M))NPNYTEF_		REM(1)NPNYTEF		REM(55)NPNYTEF	0	0	1		ENSG00000082701|ENST00000264235|GSK3B;nc|ENSG00000082701|P49841-2|GSK3B;ENSG00000105723|ENST00000222330|GSK3A	ENSG00000082701|ENST00000264235|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	MULTI-MSMS	A375_MHC_IP_R2	2	659.1822509765625	2	658.782427	1315.5503	-0.95715	-0.00063055	0.70662	0.00046551	-0.25053	-0.00016505	658.7824932293914	39.84	0.50859	40.614	40.32	40.828	0.77451					19	9	3	0	0	0	0.14143	1	14722	14722		55.235	19.108	1	2855400			42757	1765	31361	31613	41701	41701		57			-0.09485232827296386
REMNPNYTEF	10	Unmodified	_REMNPNYTEF_					0	0	0		ENSG00000082701|ENST00000264235|GSK3B;nc|ENSG00000082701|P49841-2|GSK3B;ENSG00000105723|ENST00000222330|GSK3A	ENSG00000082701|ENST00000264235|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	MULTI-MSMS	A375_MHC_IP_R1	1	651.6861572265625	2	650.78497	1299.55539	-0.12065	-7.8514E-05	-0.80419	-0.00052336	-0.92484	-0.00060187	650.7845667764698	49.715	0.50863	49.715	49.49	49.998	0					18	9	3	0	0	0	0.69726	1	17598	17598		10.8	5.9025	1	3418000			42758	1765	31361	31614	41702	41702					-0.08240928964664818
REMNPNYTEF	10	Unmodified	_REMNPNYTEF_					0	0	0		ENSG00000082701|ENST00000264235|GSK3B;nc|ENSG00000082701|P49841-2|GSK3B;ENSG00000105723|ENST00000222330|GSK3A	ENSG00000082701|ENST00000264235|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	MULTI-SECPEP	A375_MHC_IP_R2	2	651.1843872070312	2	650.78497	1299.55539	-0.9175	-0.00059709	0.23929	0.00015573	-0.67821	-0.00044137	650.7850418201488	49.053	0.45854	49.811	49.536	49.995	0.75737					18	8	3	0	0	0	0.45119	1	18425	18425		63.227	34.146	1	4103900			42759	1765	31361	31614	41703	41703					-0.08240928964664818
REMVEIITKEF	11	Unmodified	_REMVEIITKEF_					0	0	0		ENSG00000165688|ENST00000371717|PMPCA;ENST00000462616.1_1_9:139311477-139313651:+|nuORF;nc|ENSG00000165688|Q10713-2|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	MULTI-SECPEP	A375_MHC_IP_R1	1	465.6922912597656	3	465.583122	1393.72754	-0.27686	-0.0001289	-0.37821	-0.00017609	-0.65507	-0.00030499	465.9172694525959	77.209	0.25438	77.209	77.032	77.286	0					7	4	2	0	0	0	0.99692	1	28147	28147		5.6497	3.0185	1	757290			42760	6980	31362	31615	41704	41704					0.04642222722873157
RENDIKSYF	9	Unmodified	_RENDIKSYF_					0	0	0		ENSG00000168496|ENST00000305885|FEN1;ENST00000401028.2_1_1:91793937-91794252:+|nuORF	ENSG00000168496|ENST00000305885|FEN1	ENSG00000168496|ENST00000305885|FEN1	MULTI-MSMS	A375_MHC_IP_R1	1	391.59619140625	3	391.196256	1170.56694	0.30747	0.00012028	-0.13062	-5.1096E-05	0.17686	6.9186E-05	391.1962436945136	44.144	2.0326	44.144	43.553	45.585	0					71	39	4	0	0	0	0.033808	1	15363	15363		59.013	35.997	1	18720000			42761	7311	31363	31616	41705	41705					-0.011523638790094992
RENDIKSYF	9	Unmodified	_RENDIKSYF_					0	0	0		ENSG00000168496|ENST00000305885|FEN1;ENST00000401028.2_1_1:91793937-91794252:+|nuORF	ENSG00000168496|ENST00000305885|FEN1	ENSG00000168496|ENST00000305885|FEN1	MULTI-MSMS	A375_MHC_IP_R1	1	586.6903686523438	2	586.290745	1170.56694	-0.11984	-7.0261E-05	0.027287	1.5998E-05	-0.092554	-5.4263E-05	586.2907573373003	44.145	1.2733	44.145	43.757	45.03	0					78	24	5	0	0	0	0.084766	1	15552	15552		53.404	22.136	1	157000000			42762	7311	31363	31616	41706	41706					-0.011523638790094992
RENDIKSYF	9	Unmodified	_RENDIKSYF_					0	0	0		ENSG00000168496|ENST00000305885|FEN1;ENST00000401028.2_1_1:91793937-91794252:+|nuORF	ENSG00000168496|ENST00000305885|FEN1	ENSG00000168496|ENST00000305885|FEN1	MULTI-SECPEP	A375_MHC_IP_R2	2	391.5961608886719	3	391.196256	1170.56694	-0.032191	-1.2593E-05	-0.10488	-4.103E-05	-0.13707	-5.3623E-05	391.1962693180398	43.339	1.466	44.111	43.421	44.887	0.7724					65	28	4	0	0	0	0.038931	1	16111	16111		74.772	53.901	1	17649000			42763	7311	31363	31616	41707	41707					-0.011523638790094992
RENDIKSYF	9	Unmodified	_RENDIKSYF_					0	0	0		ENSG00000168496|ENST00000305885|FEN1;ENST00000401028.2_1_1:91793937-91794252:+|nuORF	ENSG00000168496|ENST00000305885|FEN1	ENSG00000168496|ENST00000305885|FEN1	MULTI-SECPEP	A375_MHC_IP_R2	2	586.6487426757812	2	586.290745	1170.56694	-0.39574	-0.00023202	0.00091395	5.3584E-07	-0.39483	-0.00023148	586.2907472118532	43.338	1.3143	44.11	43.775	45.089	0.7724					75	25	5	0	0	0	0.011465	1	16128	16128		124.95	67.231	1	162270000			42764	7311	31363	31616	41708	41708					-0.011523638790094992
RENFLQQLY	9	Unmodified	_RENFLQQLY_					0	0	0		nc|ENSG00000054267|Q4LE39-2|ARID4B;ENSG00000054267|ENST00000264183|ARID4B;ENST00000491632.5_1_1:235341091-235490234:-|nuORF;nc|ENSG00000054267|Q4LE39-3|ARID4B	nc|ENSG00000054267|Q4LE39-2|ARID4B	nc|ENSG00000054267|Q4LE39-2|ARID4B	MULTI-MSMS	A375_MHC_IP_R1	1	605.695068359375	2	605.814387	1209.61422	-0.53916	-0.00032663	-0.18021	-0.00010917	-0.71937	-0.0004358	605.8141873117088	85.063	0.71353	85.063	84.749	85.462	0					31	13	3	0	0	0	0.50355	1	31258	31258		15.248	1.3424	1	5066000			42765	1257	31364	31617	41709	41709					0.01779915392012299
RENFLQQLY	9	Unmodified	_RENFLQQLY_					0	0	0		nc|ENSG00000054267|Q4LE39-2|ARID4B;ENSG00000054267|ENST00000264183|ARID4B;ENST00000491632.5_1_1:235341091-235490234:-|nuORF;nc|ENSG00000054267|Q4LE39-3|ARID4B	nc|ENSG00000054267|Q4LE39-2|ARID4B	nc|ENSG00000054267|Q4LE39-2|ARID4B	MULTI-SECPEP	A375_MHC_IP_R2	2	606.2145385742188	2	605.814387	1209.61422	-0.32941	-0.00019956	-0.43462	-0.0002633	-0.76402	-0.00046285	605.8142490069542	84.307	0.66217	85.047	84.663	85.325	0.73962					29	12	3	0	0	0	0.50484	1	32029	32029		34.932	25.549	1	5841000			42766	1257	31364	31617	41710	41710					0.01779915392012299
RENGFLLQY	9	Unmodified	_RENGFLLQY_					0	0	0		ENST00000582201.5_1_17:62781409-62811241:-|nuORF;ENST00000582035.1_1_17:43530658-43531768:-|nuORF;ENSG00000225190|ENST00000430334|PLEKHM1	ENST00000582201.5_1_17:62781409-62811241:-|nuORF;ENSG00000225190|ENST00000430334|PLEKHM1	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	570.6953125	2	570.29583	1138.57711	-0.13104	-7.4731E-05	-0.34543	-0.00019699	-0.47646	-0.00027173	570.2956287358968	78.53	0.5577	78.53	78.301	78.859	0					16	10	2	0	0	0	0.33896	1	28654	28654		47.594	23.574	1	3908400			42767	13689;9695	31365	31618	41711	41711					0.013362438462309001
RENGFLLQY	9	Unmodified	_RENGFLLQY_					0	0	0		ENST00000582201.5_1_17:62781409-62811241:-|nuORF;ENST00000582035.1_1_17:43530658-43531768:-|nuORF;ENSG00000225190|ENST00000430334|PLEKHM1	ENST00000582201.5_1_17:62781409-62811241:-|nuORF;ENSG00000225190|ENST00000430334|PLEKHM1	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	570.6959838867188	2	570.29583	1138.57711	-0.31692	-0.00018074	-0.74542	-0.00042511	-1.0623	-0.00060584	570.29549682452	77.663	0.81552	78.406	78.113	78.929	0.74293					26	15	3	0	0	0	0.57304	1	29502	29502		29.841	12.728	1	3088600			42768	13689;9695	31365	31618	41712	41712					0.013362438462309001
RENKYIFKI	9	Unmodified	_RENKYIFKI_					0	0	0		tr|U7T130|U7T130_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00875PE=4SV=1	tr|U7T130|U7T130_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00875PE=4SV=1	tr|U7T130|U7T130_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00875PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	404.948486328125	3	404.236274	1209.68699	-0.025542	-1.0325E-05	-0.26273	-0.00010621	-0.28827	-0.00011653	404.23607841690546	44.493	0.5589	45.262	45.035	45.594	0.7691					32	10	4	0	0	0	0.2487	1	16633	16633		26.021	0	1	12457000			42769	29898	31366	31619	41713	41713					0.09053669185436775
RENLPGRNY	9	Unmodified	_RENLPGRNY_					0	0	0		ENSG00000173757|ENST00000293328|STAT5B;ENST00000468496.5_1_17:40362419-40369297:-|nuORF	ENSG00000173757|ENST00000293328|STAT5B	ENSG00000173757|ENST00000293328|STAT5B	MULTI-MSMS	A375_MHC_IP_R1	1	560.1882934570312	2	559.788704	1117.56285	-0.52451	-0.00029361	-0.067534	-3.7805E-05	-0.59204	-0.00033142	559.7885939376404	19.923	0.45528	19.923	19.674	20.129	0					11	8	2	0	0	0	0.52905	1	5029	5029		18.373	11.65	1	2259500			42770	7827	31367	31620	41714	41714					0.00877591417952317
RENLSKDLY	9	Unmodified	_RENLSKDLY_					0	0	0		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-7|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MULTI-SECPEP	A375_MHC_IP_R1	1	569.698486328125	2	569.29857	1136.58259	-0.25436	-0.00014481	-1.9285	-0.0010979	-2.1829	-0.0012427	569.2976059815592	28.615	0.5048	28.615	28.44	28.945	0					28	9	4	0	0	0	0.13199	1	8860	8860		69.338	17.07	1	12621000			42771	6487	31368	31621	41715	41715					0.01975922638052907
RENLSKDLY	9	Unmodified	_RENLSKDLY_					0	0	0		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-7|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MULTI-SECPEP	A375_MHC_IP_R2	2	569.6986083984375	2	569.29857	1136.58259	-0.39795	-0.00022655	-1.1951	-0.00068034	-1.593	-0.0009069	569.2983811986521	27.9	0.50747	28.579	28.401	28.909	0.67857					24	9	3	0	0	0	0.14554	1	9580	9580		65.474	12.07	1	9692800			42772	6487	31368	31621	41716	41716					0.01975922638052907
RENNNPVEF	9	Unmodified	_RENNNPVEF_					0	0	0		ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	MULTI-SECPEP	A375_MHC_IP_R1	1	560.1648559570312	2	559.764894	1117.51524	-0.17042	-9.5397E-05	0.50354	0.00028186	0.33312	0.00018647	559.7650143630044	38.832	0.45665	38.832	38.526	38.983	0					14	8	2	0	0	0	0.57304	1	13238	13238		23.79	19.461	1	3524600			42773	6791	31369	31622	41717	41717					-0.03882107572917448
RENPQLKQI	9	Unmodified	_RENPQLKQI_					0	0	0		nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9	nc|ENSG00000135506|Q13438-4|OS9	nc|ENSG00000135506|Q13438-4|OS9	MULTI-MSMS	A375_MHC_IP_R1	1	563.7222290039062	2	563.32238	1124.63021	-0.69298	-0.00039037	0.2185	0.00012308	-0.47448	-0.00026728	563.3224944686754	23.88	0.25367	23.88	23.737	23.991	0					7	4	2	0	0	0	0.31062	1	6681	6681		29.841	7.1043	1	3185200			42774	4691	31370	31623	41718	41718					0.07287621628893248
RENPQLKQI	9	Unmodified	_RENPQLKQI_					0	0	0		nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9	nc|ENSG00000135506|Q13438-4|OS9	nc|ENSG00000135506|Q13438-4|OS9	MULTI-MATCH	A375_MHC_IP_R2	2		2	563.32238	1124.63021	-0.86343	-0.00048639	-0.00813	-4.5798E-06	-0.87156	-0.00049097	563.3224533009269	23.069	0.30672	23.7	23.521	23.828	0.63014	-0.090407	-0.00023452	NaN	29.841	9	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1748200			42775	4691	31370	31623							0.07287621628893248
RENRRRERCRP	11	Unmodified	_RENRRRERCRP_					0	0	0			REV__nc|ENSG00000121594|P33681-3|CD80	REV__nc|ENSG00000121594|P33681-3|CD80	MULTI-MSMS	A375_MHC_IP_R2	2	764.8118286132812	2	764.410923	1526.80729	-0.91928	-0.00070271	1.1579	0.00088511	0.23862	0.0001824	764.41155554032	70.681	0.45594	71.415	71.149	71.605	0.73421					17	8	3	0	0	0	0.7362	1	26773	26773		2.9952	0	1	4502300	+		42776	18165	31371	31624	41719	41719					0.06496146960080296
RENRRRERCRP	11	Unmodified	_RENRRRERCRP_					0	0	0			REV__nc|ENSG00000121594|P33681-3|CD80	REV__nc|ENSG00000121594|P33681-3|CD80	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	764.410923	1526.80729	-0.32634	-0.00024946	1.0952	0.00083719	0.76887	0.00058773	764.4116639147472	71.372	0.50755	71.372	71.108	71.615	0	-0.021755	-2.0296E-05	NaN	2.9952	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3374400	+		42777	18165	31371	31624							0.06496146960080296
RENRRRERCRP	11	Unmodified	_RENRRRERCRP_					0	0	0			REV__nc|ENSG00000121594|P33681-3|CD80	REV__nc|ENSG00000121594|P33681-3|CD80	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	764.410923	1526.80729	-0.91928	-0.00070271	1.1579	0.00088511	0.23862	0.0001824	764.41155554032	70.681	0.45594	71.415	71.149	71.605	0.73421	0.021755	7.5542E-05	NaN	2.9952	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4502300	+		42778	18165	31371	31624							0.06496146960080296
RENTQTTIKLF	11	Unmodified	_RENTQTTIKLF_					0	0	0		nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978-3|HNRNPK;ENST00000485383.1_1_3:96068520-96068997:+|nuORF	nc|ENSG00000165119|P61978|HNRNPK	nc|ENSG00000165119|P61978|HNRNPK	MULTI-MSMS	A375_MHC_IP_R1	1	451.3174743652344	3	450.917381	1349.73031	0.051245	2.3107E-05	-0.042782	-1.9291E-05	0.008463	3.8161E-06	450.9171797721088	54.068	0.55593	54.068	53.758	54.314	0					30	10	4	0	0	0	0.053781	2	19269	19208;19269		59.935	54.067	1	5765400			42779	6916	31372	31625	41720;41721	41721					0.06943814172018392
RENTQTTIKLF	11	Unmodified	_RENTQTTIKLF_					0	0	0		nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978-3|HNRNPK;ENST00000485383.1_1_3:96068520-96068997:+|nuORF	nc|ENSG00000165119|P61978|HNRNPK	nc|ENSG00000165119|P61978|HNRNPK	MULTI-MSMS	A375_MHC_IP_R1	1	676.2724609375	2	675.872434	1349.73031	-0.41888	-0.00028311	-0.29554	-0.00019975	-0.71442	-0.00048286	675.8722570704933	54.046	0.60623	54.046	53.758	54.364	0					31	11	4	0	0	0	0.033467	1	19264	19264		82.445	52.605	1	13204000			42780	6916	31372	31625	41722	41722					0.06943814172018392
RENTQTTIKLF	11	Unmodified	_RENTQTTIKLF_					0	0	0		nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978-3|HNRNPK;ENST00000485383.1_1_3:96068520-96068997:+|nuORF	nc|ENSG00000165119|P61978|HNRNPK	nc|ENSG00000165119|P61978|HNRNPK	MULTI-MSMS	A375_MHC_IP_R2	2	676.2717895507812	2	675.872434	1349.73031	-1.2635	-0.00085394	0.11041	7.4623E-05	-1.153	-0.00077931	675.8725501459832	53.116	0.60913	53.867	53.538	54.147	0.75105					30	11	4	0	0	0	0.18973	1	20008	20008		55.249	36.876	1	11011000			42781	6916	31372	31625	41723	41723					0.06943814172018392
RENTQTTIKLF	11	Unmodified	_RENTQTTIKLF_					0	0	0		nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978-3|HNRNPK;ENST00000485383.1_1_3:96068520-96068997:+|nuORF	nc|ENSG00000165119|P61978|HNRNPK	nc|ENSG00000165119|P61978|HNRNPK	MULTI-MSMS	A375_MHC_IP_R2	2	451.31683349609375	3	450.917381	1349.73031	-0.85446	-0.00038529	0.12504	5.6382E-05	-0.72943	-0.00032891	451.2518368132955	53.159	0.55904	53.91	53.588	54.147	0.75105					23	10	3	0	0	0	0.0045927	1	20034	20034		81.642	72.89	1	5368800			42782	6916	31372	31625	41724	41724					0.06943814172018392
RENVGIYNL	9	Unmodified	_RENVGIYNL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	A375_MHC_IP_R1	1	539.6879272460938	2	539.288005	1076.56146	-0.66473	-0.00035848	0.54531	0.00029408	-0.11941	-6.4398E-05	539.2886341501751	60.514	1.2214	60.514	60.006	61.227	0					49	23	4	0	0	0	0.2415	1	21781	21781		34.932	3.6637	1	9078500			42783	2432	31373	31626	41725	41725					0.026239573292059504
RENYDIIKTY	10	Unmodified	_RENYDIIKTY_					0	0	0		ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	MULTI-MSMS	A375_MHC_IP_R1	1	658.2378540039062	2	657.838059	1313.66157	0.039852	2.6216E-05	-0.60196	-0.00039599	-0.56211	-0.00036978	657.8375896897464	45.029	0.80832	45.029	44.777	45.585	0					41	15	4	0	0	0	0.011507	2	15704	15704;15940		118.21	64.377	1	52989000			42784	7370	31374	31627	41726;41727	41726					0.017281498723150435
RENYDIIKTY	10	Unmodified	_RENYDIIKTY_					0	0	0		ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	MULTI-MSMS	A375_MHC_IP_R1	1	439.29412841796875	3	438.894465	1313.66157	0.40309	0.00017691	-0.58959	-0.00025877	-0.1865	-8.1853E-05	438.89416374624227	45.01	0.45674	45.01	44.827	45.284	0					26	8	4	0	0	0	0.0022429	1	15728	15728		113.99	90.976	1	11903000			42785	7370	31374	31627	41728	41728					0.017281498723150435
RENYDIIKTY	10	Unmodified	_RENYDIIKTY_					0	0	0		ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	MULTI-MSMS	A375_MHC_IP_R2	2	658.2373046875	2	657.838059	1313.66157	-0.85382	-0.00056168	0.13762	9.0533E-05	-0.7162	-0.00047115	657.8381387981289	44.243	0.60753	45.013	44.782	45.39	0.7691					37	11	4	0	0	0	0.011357	1	16489	16489		121.93	59.357	1	59551000			42786	7370	31374	31627	41729	41729					0.017281498723150435
RENYDIIKTY	10	Unmodified	_RENYDIIKTY_					0	0	0		ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	MULTI-SECPEP	A375_MHC_IP_R2	2	439.2941589355469	3	438.894465	1313.66157	-0.24557	-0.00010778	-0.14154	-6.2119E-05	-0.3871	-0.0001699	438.89432972622143	44.244	0.50641	45.014	44.782	45.289	0.76909					27	9	4	0	0	0	0.024623	1	16511	16511		92.409	74.07	1	12738000			42787	7370	31374	31627	41730	41730					0.017281498723150435
REPAVKLQY	9	Unmodified	_REPAVKLQY_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	A375_MHC_IP_R1	1	368.94525146484375	3	368.545108	1102.61349	0.2577	9.4974E-05	0.1433	5.2814E-05	0.401	0.00014779	368.54512541344013	34.123	0.70844	34.123	33.748	34.456	0					32	13	3	0	0	0	0.063448	2	11183	11123;11183		59.052	36.277	1	8277600			42788	3968	31375	31628	41731;41732	41732					0.06629120742968553
REPAVKLQY	9	Unmodified	_REPAVKLQY_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	A375_MHC_IP_R1	1	552.7138061523438	2	552.314023	1102.61349	-0.57007	-0.00031486	0.33783	0.00018659	-0.23223	-0.00012827	552.313911600555	34.1	0.70909	34.1	33.798	34.507	0					48	13	6	0	0	0	0.027556	1	11155	11155		93.166	36.989	1	25212000			42789	3968	31375	31628	41733	41733					0.06629120742968553
REPAVKLQY	9	Unmodified	_REPAVKLQY_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	A375_MHC_IP_R2	2	552.7139282226562	2	552.314023	1102.61349	-1.085	-0.00059925	0.24405	0.00013479	-0.84094	-0.00046446	552.3141318121914	33.317	0.76232	34.069	33.737	34.5	0.75225					35	14	3	0	0	0	0.048392	1	11869	11869		79.596	31.848	1	27185000			42790	3968	31375	31628	41734	41734					0.06629120742968553
REPAVKLQY	9	Unmodified	_REPAVKLQY_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	A375_MHC_IP_R2	2	368.9450378417969	3	368.545108	1102.61349	-0.079231	-2.92E-05	0.015927	5.8697E-06	-0.063305	-2.3331E-05	368.5450638318191	33.317	0.86451	34.069	33.635	34.5	0.75225					36	16	3	0	0	0	0.038567	1	11898	11898		68.76	48.179	1	10042000			42791	3968	31375	31628	41735	41735					0.06629120742968553
REPDRDGDR	9	Unmodified	_REPDRDGDR_					0	0	0			REV__nc|ENSG00000140832|Q96A59-2|MARVELD3;REV__ENSG00000140832|ENST00000268485|MARVELD3	REV__ENSG00000140832|ENST00000268485|MARVELD3	MULTI-SECPEP	A375_MHC_IP_R2	2	372.57684326171875	3	372.511126	1114.51155	0.1362	5.0735E-05	-0.41347	-0.00015402	-0.27727	-0.00010329	372.51103376277854	23.273	0.55814	23.903	23.521	24.079	0.63014					18	10	2	0	0	0	0.75164	1	7460	7460		9.544	4.4965	1	26275000	+		42792	27263;19231	31376	31629	41736	41736					-0.04112777346767871
REPKVVNG	8	Unmodified	_REPKVVNG_					0	0	0		nc|ENSG00000073969|P46459-2|NSF;NSF|p.F618Kfs*75|1|0.14|ENSG00000073969|chr17:46728876-46728915|GATTTTCAAATCTTGTATTACAGGCTCTTCTCGTTTTACT/-|frameshift_variant;ENSG00000073969|ENST00000398238|NSF	nc|ENSG00000073969|P46459-2|NSF	nc|ENSG00000073969|P46459-2|NSF	MSMS	A375_MHC_IP_R1	1	449.6793518066406	2	449.758884	897.503215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.667	1	69.667	69.167	70.167	0								0	0	0	0.16876	1	25285	25285		13.906	1.3745	1				42793	1574	31377	31630	41737	41737					0.05036320474573586
REPNLVLFE	9	Unmodified	_REPNLVLFE_					0	0	0			REV__ENST00000567174.5_1_16:88711344-88711776:-|nuORF	REV__ENST00000567174.5_1_16:88711344-88711776:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	558.2479248046875	2	558.806031	1115.59751	-0.61115	-0.00034151	0.036853	2.0594E-05	-0.5743	-0.00032092	558.8060071709635	89.579	0.91649	90.311	89.985	90.902	0.7318					48	17	4	0	0	0	0.30942	1	34102	34102		35.612	0	1	18091000	+		42794	26249	31378	31631	41738	41738					0.04433414506047484
REQDEQLVQW	10	Unmodified	_REQDEQLVQW_					0	0	0		HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant;ENSG00000128731|ENST00000261609|HERC2	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	665.68310546875	2	665.822941	1329.63133	-0.68657	-0.00045714	0.09491	6.3193E-05	-0.59166	-0.00039394	665.8227283985602	65.641	0.45942	65.641	65.309	65.768	0					13	8	2	0	0	0	0.91328	1	23705	23705		12.873	0	1	1909700			42795	14109	31379	31632	41739	41739					-0.020302087928712353
REQDEQLVQW	10	Unmodified	_REQDEQLVQW_					0	0	0		HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant;ENSG00000128731|ENST00000261609|HERC2	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	665.6825561523438	2	665.822941	1329.63133	-0.84318	-0.00056141	0.064734	4.3102E-05	-0.77845	-0.00051831	665.8228799750884	64.901	0.35563	65.639	65.461	65.817	0.73811					11	6	2	0	0	0	0.91328	1	24594	24594		12.873	0	1	1471700			42796	14109	31379	31632	41740	41740					-0.020302087928712353
REQDIEDQLY	10	Unmodified	_REQDIEDQLY_					0	0	0		ENSG00000171206|ENST00000643721|TRIM8	ENSG00000171206|ENST00000643721|TRIM8	ENSG00000171206|ENST00000643721|TRIM8	MULTI-MSMS	A375_MHC_IP_R1	1	655.20703125	2	654.806956	1307.59936	-0.38358	-0.00025117	0.23098	0.00015125	-0.1526	-9.9926E-05	654.8071387059321	52.262	0.35426	52.262	51.982	52.336	0					10	6	2	0	0	0	0.45806	1	18566	18566		30.703	0.86286	1	2396200			42797	7581	31380	31633	41741	41741					-0.042136212666719075
REQEAGLLQF	10	Unmodified	_REQEAGLLQF_					0	0	0		ENSG00000133265|ENST00000433386|HSPBP1;nc|ENSG00000133265|Q9NZL4-3|HSPBP1	ENSG00000133265|ENST00000433386|HSPBP1	ENSG00000133265|ENST00000433386|HSPBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	596.2119750976562	2	595.811845	1189.60914	-0.40281	-0.00024	0.23654	0.00014093	-0.16627	-9.9066E-05	595.811971077677	77.411	0.7107	77.411	77.083	77.793	0					29	13	3	0	0	0	0.89761	1	28203	28203		19.626	10.881	1	12318000			42798	4499	31381	31634	41742	41742					0.021916115293834082
REQEAGLLQF	10	Unmodified	_REQEAGLLQF_					0	0	0		ENSG00000133265|ENST00000433386|HSPBP1;nc|ENSG00000133265|Q9NZL4-3|HSPBP1	ENSG00000133265|ENST00000433386|HSPBP1	ENSG00000133265|ENST00000433386|HSPBP1	MULTI-MSMS	A375_MHC_IP_R2	2	595.8394165039062	2	595.811845	1189.60914	-0.55925	-0.00033321	0.41216	0.00024557	-0.14709	-8.7636E-05	595.8120187244531	76.531	0.66129	77.272	76.994	77.655	0.74052					34	12	4	0	0	0	0.51509	1	29115	29115		27.223	4.487	1	9628000			42799	4499	31381	31634	41743	41743					0.021916115293834082
REQEIPFVF	9	Unmodified	_REQEIPFVF_					0	0	0		ENSG00000138593|ENST00000559471|SECISBP2L;nc|ENSG00000138593|Q93073-2|SECISBP2L	ENSG00000138593|ENST00000559471|SECISBP2L	ENSG00000138593|ENST00000559471|SECISBP2L	MULTI-SECPEP	A375_MHC_IP_R1	1	583.2066650390625	2	582.806031	1163.59751	-0.14416	-8.402E-05	-0.072001	-4.1962E-05	-0.21617	-0.00012598	582.8059058848806	105.23	0.65884	105.23	104.84	105.5	0					36	12	4	0	0	0	0.69179	1	38568	38568		29.082	21.171	1	9721700			42800	5002	31382	31635	41744	41744					0.02225414506051493
REQERHRHRRW	11	Unmodified	_REQERHRHRRW_					0	0	0			REV__nc|ENSG00000278259|Q96H55-4|MYO19	REV__nc|ENSG00000278259|Q96H55-4|MYO19	MSMS	A375_MHC_IP_R2	2	823.2862548828125	2	823.435787	1644.85702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.43	1	126.72	126.22	127.22	0.2951								0	0	0	0.16337	1	49460	49460		1.1933	0.88631	1		+		42801	22977	31383	31636	41745	41745					0.06038597960377956
REQFHVLVK	9	Unmodified	_REQFHVLVK_					0	0	0			REV__NBPF12|p.S372F|1|0.35|ENSG00000268043|chr1:146969405-146969405|C/T|missense_variant	REV__NBPF12|p.S372F|1|0.35|ENSG00000268043|chr1:146969405-146969405|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	385.9404296875	3	385.892619	1154.65603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.355	1	28.033	27.533	28.533	0.67857								0	0	0	0.15386	1	9336	9336		15.248	4.4246	1		+		42802	27083	31384	31637	41746	41746					0.08488515871158597
REQQILTLF	9	Unmodified	_REQQILTLF_					0	0	0		ENSG00000147592|ENST00000276590|LACTB2;LACTB2|p.R229C|1|0.43|ENSG00000147592|chr8:70640958-70640958|G/A|missense_variant;ENST00000522558.1_1_8:71553109-71556351:-|nuORF	ENSG00000147592|ENST00000276590|LACTB2	ENSG00000147592|ENST00000276590|LACTB2	MULTI-SECPEP	A375_MHC_IP_R1	1	574.72705078125	2	574.327131	1146.63971	-0.22857	-0.00013128	-0.65746	-0.0003776	-0.88603	-0.00050887	574.326876901746	99.43	0.50637	99.43	99.117	99.624	0					18	9	2	0	0	0	0.43207	1	36497	36497		40.239	5.8375	1	5549800			42803	5693	31385	31638	41747	41747					0.07225389914401603
RERDTTDFQE	10	Unmodified	_RERDTTDFQE_					0	0	0		nc|ENSG00000141905|P08651-4|NFIC	nc|ENSG00000141905|P08651-4|NFIC	nc|ENSG00000141905|P08651-4|NFIC	MSMS	A375_MHC_IP_R2	2	648.7943725585938	2	648.79438	1295.57421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.2516	1	7.6667	7.1667	8.1667	0.4151								0	0	0	0.15642	1	2293	2293		0	0	1				42804	14647	31386	31639	41748	41748					-0.06175676069278779
RERDWFPDQGY	11	Unmodified	_RERDWFPDQGY_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-SECPEP	A375_MHC_IP_R2	2	490.62493896484375	3	490.224985	1467.65313	-0.93527	-0.00045849	0.38658	0.00018951	-0.54869	-0.00026898	490.22524535656237	57.193	0.409	57.943	57.712	58.121	0.75015					12	7	2	0	0	0	0.98595	1	21657	21657		17.572	8.8201	1	3370400			42805	3490	31387	31640	41749	41749					-0.061994040442868936
REREAERRRQR	11	Unmodified	_REREAERRRQR_					0	0	0			REV__ENST00000579009.1_1_17:16842557-16842860:-|nuORF	REV__ENST00000579009.1_1_17:16842557-16842860:-|nuORF	MSMS	A375_MHC_IP_R2	2	771.6494140625	2	771.427627	1540.8407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.93	1	144.95	144.45	145.45	0.021408								0	0	0	0.16358	1	56598	56598		0.30703	0.30703	1		+		42806	26334	31388	31641	41750	41750					0.09191472003612944
RERELKRKENK	11	Unmodified	_RERELKRKENK_					0	0	0			REV__SLC2A4|p.D262N|1|0.18|ENSG00000181856|chr17:7284541-7284541|G/A|missense_variant	REV__SLC2A4|p.D262N|1|0.18|ENSG00000181856|chr17:7284541-7284541|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	496.2126159667969	3	495.958462	1484.85356	-0.7395	-0.00036676	0.82378	0.00040856	0.084282	4.18E-05	496.2931840110331	147.61	0.61935	147.61	147.41	148.03	0					63	45	2	0	0	0	0.73902	1	56369	56369		0.08335	0	1	91205	+		42807	27987	31389	31642	41751	41751					0.13052490343170575
RERELKRKENK	11	Unmodified	_RERELKRKENK_					0	0	0			REV__SLC2A4|p.D262N|1|0.18|ENSG00000181856|chr17:7284541-7284541|G/A|missense_variant	REV__SLC2A4|p.D262N|1|0.18|ENSG00000181856|chr17:7284541-7284541|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	743.8348388671875	2	743.434055	1484.85356	-0.66029	-0.00049088	0.69534	0.00051694	0.035046	2.6055E-05	743.434634881528	141.87	1.3797	141.9	141	142.38	0.030731					49	26	3	0	0	0	0.73906	1	55419	55419		0.26902	0.26902	1	1323100	+		42808	27987	31389	31642	41752	41752					0.13052490343170575
RERELKRKENK	11	Unmodified	_RERELKRKENK_					0	0	0			REV__SLC2A4|p.D262N|1|0.18|ENSG00000181856|chr17:7284541-7284541|G/A|missense_variant	REV__SLC2A4|p.D262N|1|0.18|ENSG00000181856|chr17:7284541-7284541|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	496.212646484375	3	495.958462	1484.85356	-0.275	-0.00013639	0.39419	0.0001955	0.11919	5.9115E-05	495.9586693724588	147.57	0.32162	147.59	147.47	147.79	0.019897					42	29	2	0	0	0	0.73902	1	57357	57357		0.08335	0	1	80343	+		42809	27987	31389	31642	41753	41753					0.13052490343170575
RERELKRKENK	11	Unmodified	_RERELKRKENK_					0	0	0			REV__SLC2A4|p.D262N|1|0.18|ENSG00000181856|chr17:7284541-7284541|G/A|missense_variant	REV__SLC2A4|p.D262N|1|0.18|ENSG00000181856|chr17:7284541-7284541|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	495.958462	1484.85356	-0.7395	-0.00036676	0.82378	0.00040856	0.084282	4.18E-05	496.2931840110331	147.61	0.61935	147.61	147.41	148.03	0	0.0093794	0.00032662	NaN	0.08335	63	45	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91205	+		42810	27987	31389	31642							0.13052490343170575
RERELKRKENK	11	Unmodified	_RERELKRKENK_					0	0	0			REV__SLC2A4|p.D262N|1|0.18|ENSG00000181856|chr17:7284541-7284541|G/A|missense_variant	REV__SLC2A4|p.D262N|1|0.18|ENSG00000181856|chr17:7284541-7284541|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	495.958462	1484.85356	-0.275	-0.00013639	0.39419	0.0001955	0.11919	5.9115E-05	495.9586693724588	147.57	0.32162	147.59	147.47	147.79	0.019897	-0.0093794	-0.00031256	NaN	0.08335	42	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80343	+		42811	27987	31389	31642							0.13052490343170575
RERGAAPL	8	Unmodified	_RERGAAPL_					0	0	0			REV__ENST00000382788.7_1_4:3433164-3433590:+|nuORF	REV__ENST00000382788.7_1_4:3433164-3433590:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	435.6510925292969	2	435.251226	868.487899	-0.23922	-0.00010412	0.039225	1.7073E-05	-0.19999	-8.7047E-05	435.2511563360184	104.48	6.2587	105.24	102.77	109.03	0.76308					258	122	3	0	0	0	0.7766	1	39200	39200		7.2892	2.0586	1	16931000	+		42812	24246	31390	31643	41754	41754					0.048394536773685104
RERIRIIRERE	11	Unmodified	_RERIRIIRERE_					0	0	0		nc|ENSG00000137776|Q9NWH9-3|SLTM;ENSG00000137776|ENST00000380516|SLTM	nc|ENSG00000137776|Q9NWH9-3|SLTM	nc|ENSG00000137776|Q9NWH9-3|SLTM	MSMS	A375_MHC_IP_R2	2	763.5674438476562	2	763.455322	1524.89609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.26	1	119.79	119.29	120.29	0.5321								0	0	0	0.16352	1	45407	45407		1.1933	0	1				42813	4913	31391	31644	41755	41755					0.1546388547137667
RERKFPKF	8	Unmodified	_RERKFPKF_					0	0	0		nc|ENSG00000163618|Q9ULU8-3|CADPS;ENSG00000163618|ENST00000383710|CADPS;nc|ENSG00000163618|Q9ULU8-4|CADPS;nc|ENSG00000163618|Q9ULU8-2|CADPS;nc|ENSG00000163618|Q9ULU8-5|CADPS	nc|ENSG00000163618|Q9ULU8-3|CADPS	nc|ENSG00000163618|Q9ULU8-3|CADPS	MULTI-SECPEP	A375_MHC_IP_R2	2	370.6243591308594	3	369.885576	1106.6349	-0.1519	-5.6187E-05	-1.7934	-0.00066334	-1.9453	-0.00071952	370.22005624477123	28.459	0.3047	29.138	28.909	29.214	0.67857					7	5	2	0	0	0	0.972	1	9824	9824		6.2058	0	1	1302400			42814	6693	31392	31645	41756	41756					0.08584550562318327
RERMPLWRE	9	Unmodified	_RERMPLWRE_					0	0	0			REV__nc|ENSG00000174780|O76094-2|SRP72	REV__nc|ENSG00000174780|O76094-2|SRP72	MULTI-MSMS	A375_MHC_IP_R2	2	425.2917175292969	3	424.892513	1271.65571	-0.36353	-0.00015446	-1.2381	-0.00052606	-1.6016	-0.00068053	424.89196385314784	26.896	0.51206	27.556	27.313	27.825	0.65992					16	9	3	0	0	0	0.67152	1	9192	9192		9.544	0.3002	1	3502700	+		42815	21298	31393	31646	41757	41757					0.03074772879676857
RERPLWLR	8	Unmodified	_RERPLWLR_					0	0	0			REV__ENST00000418342.5_1_1:23420821-23420869:-|nuORF	REV__ENST00000418342.5_1_1:23420821-23420869:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	375.9212951660156	3	375.892842	1124.6567	0.012545	4.7156E-06	0.28194	0.00010598	0.29449	0.0001107	375.89291179354916	26.182	0.55801	26.182	26.017	26.575	0					19	10	2	0	0	0	0.77544	1	7833	7833		11.495	11.495	1	4203900	+		42816	24554	31394	31647	41758	41758					0.09935355310881278
RERRRRRNLF	10	Unmodified	_RERRRRRNLF_					0	0	0			REV__ENSG00000150637|ENST00000582621|CD226	REV__ENSG00000150637|ENST00000582621|CD226	MULTI-MSMS	A375_MHC_IP_R1	1	487.3378601074219	3	486.95902	1457.85523	-0.50423	-0.00024554	0.19915	9.6978E-05	-0.30508	-0.00014856	486.95901229047854	132.67	1.3188	132.67	131.78	133.1	0					102	25	6	0	0	0	0.72378	2	51248	50885;51248		0.69767	0.69767	1	99119000	+		42817	19721	31395	31648	41759;41760	41760					0.14461588942458548
RERRRRRNLF	10	Unmodified	_RERRRRRNLF_					0	0	0			REV__ENSG00000150637|ENST00000582621|CD226	REV__ENSG00000150637|ENST00000582621|CD226	MULTI-MSMS	A375_MHC_IP_R1	1	488.19952392578125	3	486.95902	1457.85523	-0.51704	-0.00025178	0.19366	9.4306E-05	-0.32338	-0.00015747	486.95902640652577	133.48	2.5402	133.48	133	135.54	0					155	49	6	0	0	0	0.72658	2	51287	51287;51341		0.13989	0	1	231540000	+		42818	19721	31395	31648	41761;41762	41761					0.14461588942458548
RERRRRRNLF	10	Unmodified	_RERRRRRNLF_					0	0	0			REV__ENSG00000150637|ENST00000582621|CD226	REV__ENSG00000150637|ENST00000582621|CD226	MSMS	A375_MHC_IP_R1	1	486.98779296875	3	486.95902	1457.85523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.299	1	22.299	21.799	22.799	0								0	0	0	0.15642	1	5971	5971		0	0	1		+		42819	19721	31395	31648	41763	41763					0.14461588942458548
RERRRRRNLF	10	Unmodified	_RERRRRRNLF_					0	0	0			REV__ENSG00000150637|ENST00000582621|CD226	REV__ENSG00000150637|ENST00000582621|CD226	MULTI-SECPEP	A375_MHC_IP_R1	1	487.3378601074219	3	486.95902	1457.85523	-0.50423	-0.00024554	0.19915	9.6978E-05	-0.30508	-0.00014856	486.95901229047854	132.67	1.3188	132.67	131.78	133.1	0					102	25	6	0	0	0	0.94862	1	51248	51248		0.69767	0.60282	1	99119000	+		42820	19721	31395	31648	41764	41764					0.14461588942458548
RERRRRRNLF	10	Unmodified	_RERRRRRNLF_					0	0	0			REV__ENSG00000150637|ENST00000582621|CD226	REV__ENSG00000150637|ENST00000582621|CD226	MULTI-SECPEP	A375_MHC_IP_R1	1	729.8201293945312	2	729.934891	1457.85523	-0.81472	-0.00059469	0.36267	0.00026472	-0.45205	-0.00032997	729.9350458383597	133.48	2.8452	133.48	133	135.84	0					173	55	6	0	0	0	0.95034	1	52249	52249		0.40072	0	1	194380000	+		42821	19721	31395	31648	41765	41765					0.14461588942458548
RERRRRRNLF	10	Unmodified	_RERRRRRNLF_					0	0	0			REV__ENSG00000150637|ENST00000582621|CD226	REV__ENSG00000150637|ENST00000582621|CD226	MULTI-MSMS	A375_MHC_IP_R2	2	487.338134765625	3	486.95902	1457.85523	-0.54297	-0.0002644	0.080127	3.9019E-05	-0.46284	-0.00022538	486.9589666990182	132.54	1.321	132.73	131.85	133.17	0.18953					97	25	5	0	0	0	0.72378	2	52231	51889;52231		0.69767	0.56317	1	104060000	+		42822	19721	31395	31648	41766;41767	41767					0.14461588942458548
RERRRRRNLF	10	Unmodified	_RERRRRRNLF_					0	0	0			REV__ENSG00000150637|ENST00000582621|CD226	REV__ENSG00000150637|ENST00000582621|CD226	MULTI-SECPEP	A375_MHC_IP_R2	2	487.338134765625	3	486.95902	1457.85523	-0.54297	-0.0002644	0.080127	3.9019E-05	-0.46284	-0.00022538	486.9589666990182	132.54	1.321	132.73	131.85	133.17	0.18953					97	25	5	0	0	0	0.94862	1	52231	52231		0.69767	0.2894	1	104060000	+		42823	19721	31395	31648	41768	41768					0.14461588942458548
RERRVRRREEE	11	Unmodified	_RERRVRRREEE_					0	0	0			REV__ENSG00000175592|ENST00000312562|FOSL1	REV__ENSG00000175592|ENST00000312562|FOSL1	MULTI-SECPEP	A375_MHC_IP_R1	1	523.7416381835938	3	524.292616	1569.85602	-0.48211	-0.00025277	1.298	0.00068055	0.81592	0.00042778	524.2931331249239	75.296	0.40374	75.296	75.11	75.514	0					16	7	3	0	0	0	1.0015	1	27480	27480		0.073264	0	1	3007400	+		42824	21352	31396	31649	41769	41769					0.09388338800840756
RERSFFFIIRR	11	Unmodified	_RERSFFFIIRR_					0	0	0			REV__ENST00000256495.3_1_3:5026696-5026768:+|nuORF	REV__ENST00000256495.3_1_3:5026696-5026768:+|nuORF	MSMS	A375_MHC_IP_R1	1	763.8915405273438	2	763.938776	1525.863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.04	1	107.04	106.54	107.54	0								0	0	0	0.1635	1	39281	39281		0	0	1		+		42825	23151	31397	31650	41770	41770					0.1211030341935384
RERWAHLLPLR	11	Unmodified	_RERWAHLLPLR_					0	0	0		ENST00000480340.1_1_1:153904922-153905273:-|nuORF;ENST00000462423.1_1_1:153904922-153905503:-|nuORF	ENST00000480340.1_1_1:153904922-153905273:-|nuORF	ENST00000480340.1_1_1:153904922-153905273:-|nuORF	MSMS	A375_MHC_IP_R2	2	724.2520141601562	2	723.925669	1445.83679	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.55	1	133.71	133.21	134.21	0.16487								0	0	0	0.16341	1	52537	52537		0.96228	0.56156	1				42826	12203	31398	31651	41771	41771					0.13170034247877993
RERYWHLLYYL	11	Unmodified	_RERYWHLLYYL_					0	0	0			REV__ENSG00000139547|ENST00000398138|RDH16	REV__ENSG00000139547|ENST00000398138|RDH16	MULTI-SECPEP	A375_MHC_IP_R1	1	538.2019653320312	3	537.952537	1610.83578	-0.73854	-0.0003973	-0.7002	-0.00037667	-1.4387	-0.00077397	538.2864462012545	53.377	0.20371	53.377	53.199	53.403	0					5	3	2	0	0	0	1.0015	1	19036	19036		0	0	1	559040	+		42827	19163	31399	31652	41772	41772					0.05479775088338101
RESASNCSFC	10	Unmodified	_RESASNCSFC_					0	0	0			REV__nc|ENSG00000075391|Q9UJF2|RASAL2	REV__nc|ENSG00000075391|Q9UJF2|RASAL2	MSMS	A375_MHC_IP_R1	1	552.1798706054688	2	552.215866	1102.41718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.7	1	20.7	20.2	21.2	0								0	0	0	0.15549	1	5350	5350		2.9952	0.41776	1		+		42828	16655	31400	31653	41773	41773					-0.12993375484757053
RESDQLFKQY	10	Unmodified	_RESDQLFKQY_					0	0	0		ENST00000578150.1_1_18:21594913-21660647:+|nuORF;nc|ENSG00000168234|Q8N584-3|TTC39C;ENSG00000168234|ENST00000317571|TTC39C	ENST00000578150.1_1_18:21594913-21660647:+|nuORF	ENST00000578150.1_1_18:21594913-21660647:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	438.95440673828125	3	438.554331	1312.64116	0.28373	0.00012443	-0.34693	-0.00015215	-0.0632	-2.7717E-05	438.5541326243373	38.857	0.45708	38.857	38.679	39.136	0					24	8	4	0	0	0	0.021392	1	13223	13223		74.306	66.829	1	19553000			42829	13652	31401	31654	41774	41774					-0.002650207874694388
RESDQLFKQY	10	Unmodified	_RESDQLFKQY_					0	0	0		ENST00000578150.1_1_18:21594913-21660647:+|nuORF;nc|ENSG00000168234|Q8N584-3|TTC39C;ENSG00000168234|ENST00000317571|TTC39C	ENST00000578150.1_1_18:21594913-21660647:+|nuORF	ENST00000578150.1_1_18:21594913-21660647:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	657.7276000976562	2	657.327859	1312.64116	-0.054233	-3.5649E-05	-0.52632	-0.00034597	-0.58056	-0.00038162	657.3275291983867	38.882	0.50804	38.882	38.679	39.187	0					25	9	4	0	0	0	0.0015274	1	13225	13225		142.92	97.219	1	22665000			42830	13652	31401	31654	41775	41775					-0.002650207874694388
RESDQLFKQY	10	Unmodified	_RESDQLFKQY_					0	0	0		ENST00000578150.1_1_18:21594913-21660647:+|nuORF;nc|ENSG00000168234|Q8N584-3|TTC39C;ENSG00000168234|ENST00000317571|TTC39C	ENST00000578150.1_1_18:21594913-21660647:+|nuORF	ENST00000578150.1_1_18:21594913-21660647:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	657.7274780273438	2	657.327859	1312.64116	-1.1782	-0.00077445	0.15031	9.8805E-05	-1.0279	-0.00067564	657.3279547444945	38.102	0.46227	38.876	38.636	39.098	0.77451					26	8	4	0	0	0	0.011463	1	13975	13975		111.31	67.537	1	20319000			42831	13652	31401	31654	41776	41776					-0.002650207874694388
RESDQLFKQY	10	Unmodified	_RESDQLFKQY_					0	0	0		ENST00000578150.1_1_18:21594913-21660647:+|nuORF;nc|ENSG00000168234|Q8N584-3|TTC39C;ENSG00000168234|ENST00000317571|TTC39C	ENST00000578150.1_1_18:21594913-21660647:+|nuORF	ENST00000578150.1_1_18:21594913-21660647:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	438.9542541503906	3	438.554331	1312.64116	-0.57835	-0.00025364	0.11919	5.2272E-05	-0.45915	-0.00020136	438.5543716907704	38.098	0.5641	38.872	38.585	39.149	0.77451					27	10	4	0	0	0	0.037648	1	13977	13977		62.894	51.995	1	14645000			42832	13652	31401	31654	41777	41777					-0.002650207874694388
RESERAFTY	9	Unmodified	_RESERAFTY_					0	0	0		nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9;nc|ENSG00000101194|Q9BYT1-3|SLC17A9;ENST00000488738.5_1_20:61584086-61594126:+|nuORF	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MULTI-SECPEP	A375_MHC_IP_R1	1	387.25592041015625	3	386.856122	1157.54654	-0.084421	-3.2659E-05	-0.20541	-7.9465E-05	-0.28983	-0.00011212	386.85603993204154	26.123	0.60746	26.123	25.866	26.474	0					22	11	3	0	0	0	0.73008	1	7758	7758		8.4443	1.4072	1	6944400			42833	2270	31402	31655	41778	41778					-0.02593534538800668
RESERAFTY	9	Unmodified	_RESERAFTY_					0	0	0		nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9;nc|ENSG00000101194|Q9BYT1-3|SLC17A9;ENST00000488738.5_1_20:61584086-61594126:+|nuORF	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MULTI-SECPEP	A375_MHC_IP_R2	2	387.2972106933594	3	386.856122	1157.54654	-0.58687	-0.00022703	0.35836	0.00013863	-0.2285	-8.8398E-05	386.85622473882944	25.534	0.50819	26.185	25.932	26.441	0.65175					22	9	3	0	0	0	0.65527	1	8533	8533		16.566	8.6205	1	5340400			42834	2270	31402	31655	41779	41779					-0.02593534538800668
RESEYKQVY	9	Unmodified	_RESEYKQVY_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	A375_MHC_IP_R1	1	601.6958618164062	2	601.296027	1200.5775	-0.37075	-0.00022293	-0.88854	-0.00053427	-1.2593	-0.0007572	601.294961087096	19.959	0.9133	19.959	19.725	20.638	0					26	17	3	0	0	0	0.056914	1	5039	5039		61.602	19.646	1	8319500			42835	1610	31403	31656	41780	41780					-0.014763812245746522
RESEYKQVY	9	Unmodified	_RESEYKQVY_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	A375_MHC_IP_R2	2	401.8712463378906	3	401.199777	1200.5775	-0.29103	-0.00011676	0.48547	0.00019477	0.19444	7.8008E-05	401.19952967751846	19.049	0.35003	19.652	19.483	19.833	0.60308					17	6	4	0	0	0	0.3489	1	5781	5781		20.871	8.6964	1	4993500			42836	1610	31403	31656	41781	41781					-0.014763812245746522
RESEYKQVY	9	Unmodified	_RESEYKQVY_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	A375_MHC_IP_R2	2	601.6954956054688	2	601.296027	1200.5775	-0.7652	-0.00046011	-0.19299	-0.00011605	-0.9582	-0.00057616	601.2957215472711	19.062	0.24969	19.665	19.533	19.783	0.60308					9	4	3	0	0	0	0.12748	1	5835	5835		45.74	5.7902	1	5898300			42837	1610	31403	31656	41782	41782					-0.014763812245746522
RESLAIKKI	9	Unmodified	_RESLAIKKI_					0	0	0		ZBED9|p.M1008I|1|0.44|ENSG00000232040|chr6:28572865-28572865|C/T|missense_variant	ZBED9|p.M1008I|1|0.44|ENSG00000232040|chr6:28572865-28572865|C/T|missense_variant	ZBED9|p.M1008I|1|0.44|ENSG00000232040|chr6:28572865-28572865|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	353.62896728515625	3	353.229119	1056.66553	-0.51749	-0.00018279	-0.10721	-3.7868E-05	-0.6247	-0.00022066	353.2291120421099	23.538	0.30335	24.168	23.979	24.283	0.63014					11	5	3	0	0	0	0.35164	1	7604	7604		27.088	8.3671	1	4107200			42838	30179	31404	31657	41783	41783					0.13946284156713773
RESPNITDRW	10	Unmodified	_RESPNITDRW_					0	0	0		ENSG00000196305|ENST00000443024|IARS1;ENST00000472894.1_1_9:95018893-95021273:-|nuORF	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	A375_MHC_IP_R1	1	637.7174072265625	2	637.317825	1272.6211	-1.0024	-0.00063887	0.40028	0.00025511	-0.60215	-0.00038376	637.3180987849107	36.618	0.45616	36.618	36.389	36.845	0					23	8	3	0	0	0	0.18027	1	12251	12251		64.692	47.749	1	13274000			42839	9025	31405	31658	41784	41784					-0.004307717274514289
RESPNITDRW	10	Unmodified	_RESPNITDRW_					0	0	0		ENSG00000196305|ENST00000443024|IARS1;ENST00000472894.1_1_9:95018893-95021273:-|nuORF	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	A375_MHC_IP_R1	1	425.6142272949219	3	425.214309	1272.6211	-0.42176	-0.00017934	0.20109	8.5504E-05	-0.22068	-9.3834E-05	425.2143934755647	36.621	0.60666	36.621	36.339	36.945	0					31	11	4	0	0	0	0.011677	1	12266	12266		113.99	96.128	1	13605000			42840	9025	31405	31658	41785	41785					-0.004307717274514289
RESPNITDRW	10	Unmodified	_RESPNITDRW_					0	0	0		ENSG00000196305|ENST00000443024|IARS1;ENST00000472894.1_1_9:95018893-95021273:-|nuORF	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	A375_MHC_IP_R2	2	637.7168579101562	2	637.317825	1272.6211	-0.94927	-0.00060499	0.41774	0.00026623	-0.53153	-0.00033875	637.3180397737058	35.836	0.55914	36.6	36.283	36.842	0.76338					24	10	3	0	0	0	0.1863	1	12973	12973		64.927	38.043	1	10788000			42841	9025	31405	31658	41786	41786					-0.004307717274514289
RESPNITDRW	10	Unmodified	_RESPNITDRW_					0	0	0		ENSG00000196305|ENST00000443024|IARS1;ENST00000472894.1_1_9:95018893-95021273:-|nuORF	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	A375_MHC_IP_R2	2	425.6141357421875	3	425.214309	1272.6211	-0.33478	-0.00014235	0.02803	1.1919E-05	-0.30675	-0.00013043	425.2143275398394	35.828	0.55914	36.591	36.283	36.842	0.76338					27	10	3	0	0	0	0.034789	1	12984	12984		80.24	63.127	1	12387000			42842	9025	31405	31658	41787	41787					-0.004307717274514289
RESPPIRAF	9	Unmodified	_RESPPIRAF_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1980590820312	2	536.79854	1071.58253	-0.49773	-0.00026718	1.2816	0.00068798	0.78391	0.0004208	536.7987645376937	35.797	0.66386	35.797	35.369	36.033	0					32	12	5	0	0	0	0.54812	1	11913	11913		24.991	17.382	1	5496500			42843	5209	31406	31659	41788	41788					0.049599674286810114
RESRKKRRRKY	11	Unmodified	_RESRKKRRRKY_					0	0	0			REV__nc|ENSG00000197381|P78563-5|ADARB1	REV__nc|ENSG00000197381|P78563-5|ADARB1	MULTI-MSMS	A375_MHC_IP_R1	1	522.0529174804688	3	521.653596	1561.93896	-0.8074	-0.00042118	-0.74696	-0.00038965	-1.5544	-0.00081083	521.6534013145309	136.77	0.46201	136.77	136.56	137.03	0					12	8	2	0	0	0	0.73924	1	52700	52700		0.094841	0	1	1558300	+		42844	27441	31407	31660	41789	41789					0.18046700319496267
RESRKKRRRKY	11	Unmodified	_RESRKKRRRKY_					0	0	0			REV__nc|ENSG00000197381|P78563-5|ADARB1	REV__nc|ENSG00000197381|P78563-5|ADARB1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	521.653596	1561.93896	-0.8074	-0.00042118	-0.74696	-0.00038965	-1.5544	-0.00081083	521.6534013145309	136.77	0.46201	136.77	136.56	137.03	0	-0.031779	-4.7807E-05	NaN	0.094841	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1558300	+		42845	27441	31407	31660							0.18046700319496267
RESRKKRRRKY	11	Unmodified	_RESRKKRRRKY_					0	0	0			REV__nc|ENSG00000197381|P78563-5|ADARB1	REV__nc|ENSG00000197381|P78563-5|ADARB1	MULTI-MATCH	A375_MHC_IP_R2	2		3	521.653596	1561.93896	-0.43633	-0.00022761	-0.66528	-0.00034704	-1.1016	-0.00057466	521.6531038743456	136.73	0.31091	136.84	136.71	137.02	0.11134	0.031779	8.0016E-05	NaN	0.094841	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	991120	+		42846	27441	31407	31660							0.18046700319496267
RETDSRIQML	10	Unmodified	_RETDSRIQML_					0	0	0			REV__CON__Q9D312	REV__CON__Q9D312	MULTI-SECPEP	A375_MHC_IP_R2	2	417.283447265625	3	416.883683	1247.62922	0.020686	8.6238E-06	0.7978	0.00033259	0.81848	0.00034121	416.8835073931599	63.559	0.40787	64.299	64.088	64.496	0.74022					17	7	3	0	0	0	0.93194	1	24141	24141		1.4551	0.82829	1	1444500	+	+	42847	15899	31408	31661	41790	41790					0.015310391976754545
RETEPDGGSGW	11	Unmodified	_RETEPDGGSGW_					0	0	0		ENSG00000178084|ENST00000318351|HTR3C	ENSG00000178084|ENST00000318351|HTR3C	ENSG00000178084|ENST00000318351|HTR3C	MSMS	A375_MHC_IP_R2	2	595.714599609375	2	595.757266	1189.49998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.823	1	88.555	88.055	89.055	0.7318								0	0	0	0.1624	1	33410	33410		6.2058	0	1				42848	8131	31409	31662	41791	41791					-0.08719019160753305
RETKDLDEMDD	11	Unmodified	_RETKDLDEMDD_					0	0	0		EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant;EFTUD2|p.S944*|1|0.12|ENSG00000108883|chr17:44851362-44851363|CT/-|frameshift_variant;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000589825.5_1_17:42960950-42971889:-|nuORF	EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	683.7337036132812	2	683.793189	1365.57182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.47	1	105.47	104.97	105.97	0								0	0	0	0.16223	1	38721	38721		7.1017	1.3699	1				42849	829	31410	31663	41792	41792					-0.09633892589204152
RETNPLYKDY	10	Unmodified	_RETNPLYKDY_					0	0	0		ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4;nc|ENSG00000109911|Q96EB1-2|ELP4	ENSG00000109911|ENST00000640961|ELP4	ENSG00000109911|ENST00000640961|ELP4	MULTI-MSMS	A375_MHC_IP_R1	1	650.2220458984375	2	649.822409	1297.63027	-0.3588	-0.00023316	-0.16639	-0.00010812	-0.52519	-0.00034128	649.8223024618259	31.393	0.35387	31.393	31.211	31.565	0					15	6	3	0	0	0	0.46263	1	10067	10067		30.431	15.183	1	3556200			42850	2901	31411	31664	41793	41793					-0.00664423161765626
RETNPLYKDY	10	Unmodified	_RETNPLYKDY_					0	0	0		ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4;nc|ENSG00000109911|Q96EB1-2|ELP4	ENSG00000109911|ENST00000640961|ELP4	ENSG00000109911|ENST00000640961|ELP4	MULTI-MSMS	A375_MHC_IP_R2	2	650.2212524414062	2	649.822409	1297.63027	-0.73938	-0.00048046	-0.57286	-0.00037226	-1.3122	-0.00085272	649.8220196129124	30.683	0.4535	31.401	31.114	31.567	0.71857					16	8	3	0	0	0	0.19516	1	10786	10786		49.742	16.956	1	4535800			42851	2901	31411	31664	41794	41794					-0.00664423161765626
RETSMVHEL	9	Oxidation (M)	_RETSM(Oxidation (M))VHEL_		RETSM(1)VHEL		RETSM(42)VHEL	0	0	1		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;ENST00000498837.1_1_3:127786720-127788502:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	A375_MHC_IP_R1	1	559.6685180664062	2	559.268955	1116.52336	-0.66997	-0.00037469	-0.084597	-4.7313E-05	-0.75457	-0.00042201	559.2689061929902	19.394	0.25282	19.394	19.268	19.521	0					11	4	3	0	0	0	0.14858	1	4804	4804		41.956	16.965	1	17792000			42852	1290	31412	31665	41795	41795		34			-0.030242966477771915
RETSMVHEL	9	Unmodified	_RETSMVHEL_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;ENST00000498837.1_1_3:127786720-127788502:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-SECPEP	A375_MHC_IP_R1	1	551.6709594726562	2	551.271498	1100.52844	-0.75299	-0.0004151	-0.14649	-8.0757E-05	-0.89948	-0.00049586	551.2714410200394	27.861	0.45415	27.861	27.684	28.138	0					23	8	3	0	0	0	0.16595	1	8513	8513		53.404	24.322	1	16332000			42853	1290	31412	31666	41796	41796					-0.017799927851683606
RETSMVHEL	9	Unmodified	_RETSMVHEL_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;ENST00000498837.1_1_3:127786720-127788502:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-SECPEP	A375_MHC_IP_R2	2	551.6708984375	2	551.271498	1100.52844	-0.77117	-0.00042512	-0.19001	-0.00010475	-0.96118	-0.00052987	551.2715350382231	27.193	0.4591	27.872	27.69	28.149	0.67857					24	8	4	0	0	0	0.03341	1	9253	9253		93.166	49.308	1	16378000			42854	1290	31412	31666	41797	41797					-0.017799927851683606
RETWVRRRRWW	11	Unmodified	_RETWVRRRRWW_					0	0	0			REV__ENST00000374763.6_2_1:21923469-21929399:-|nuORF	REV__ENST00000374763.6_2_1:21923469-21929399:-|nuORF	MSMS	A375_MHC_IP_R1	1	843.9615478515625	2	843.963649	1685.91274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.85	1	107.85	107.35	108.35	0								0	0	0	0.16337	1	39569	39569		1.1933	1.1933	1		+		42855	24114	31413	31667	41798	41798					0.09722431148020405
REVALLRRL	9	Unmodified	_REVALLRRL_					0	0	0		ENSG00000135446|ENST00000257904|CDK4;ENST00000551706.1_1_12:58145281-58145962:-|nuORF	ENSG00000135446|ENST00000257904|CDK4	ENSG00000135446|ENST00000257904|CDK4	MULTI-MSMS	A375_MHC_IP_R1	1	376.3119812011719	3	375.912013	1124.71421	0.45313	0.00017034	-0.20014	-7.5234E-05	0.253	9.5104E-05	375.91193655788305	40.494	0.40633	40.494	40.254	40.66	0					16	7	3	0	0	0	0.4782	1	13921	13921		20.871	1.2452	1	4310200			42856	4684	31414	31668	41799	41799					0.15684197516452514
REVDIKGVFRY	11	Unmodified	_REVDIKGVFRY_					0	0	0		ENST00000559562.1_1_15:45362663-45365725:+|nuORF;ENST00000559230.5_1_15:45353218-45365725:+|nuORF;ENSG00000140263|ENST00000267814|SORD	ENST00000559562.1_1_15:45362663-45365725:+|nuORF	ENST00000559562.1_1_15:45362663-45365725:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	461.6576232910156	3	461.257738	1380.75138	-0.37153	-0.00017137	-0.11032	-5.0885E-05	-0.48185	-0.00022226	461.25774476092835	53.174	0.6069	53.174	52.847	53.453	0					29	11	4	0	0	0	0.44059	1	18929	18929		35.793	31.077	1	8961700			42857	5132	31415	31669	41800	41800					0.07623824271581725
REVDIKGVFRY	11	Unmodified	_REVDIKGVFRY_					0	0	0		ENST00000559562.1_1_15:45362663-45365725:+|nuORF;ENST00000559230.5_1_15:45353218-45365725:+|nuORF;ENSG00000140263|ENST00000267814|SORD	ENST00000559562.1_1_15:45362663-45365725:+|nuORF	ENST00000559562.1_1_15:45362663-45365725:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	461.6577453613281	3	461.257738	1380.75138	-0.87411	-0.00040319	0.37281	0.00017196	-0.5013	-0.00023123	461.25792884759574	52.323	0.60569	53.075	52.831	53.437	0.75225					25	11	3	0	0	0	0.8205	1	19718	19718		33.821	26.784	1	8030400			42858	5132	31415	31669	41801	41801					0.07623824271581725
REVDPDGRRTL	11	Unmodified	_REVDPDGRRTL_					0	0	0		nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;ENST00000547548.1_1_12:32866256-32875568:+|nuORF	nc|ENSG00000087470|O00429-4|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	MULTI-MSMS	A375_MHC_IP_R1	1	438.838623046875	3	438.568863	1312.68476	-0.3147	-0.00013802	0.055089	2.4161E-05	-0.25961	-0.00011386	438.5689457693413	19.293	0.28278	19.293	19.238	19.521	0					12	5	3	0	0	0	0.32259	2	4679	4679;4732		45.004	33.938	1	74359000			42859	1874	31416	31670	41802;41803	41802					0.040925887096591396
REVDPDGRRTL	11	Unmodified	_REVDPDGRRTL_					0	0	0		nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;ENST00000547548.1_1_12:32866256-32875568:+|nuORF	nc|ENSG00000087470|O00429-4|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	MULTI-MSMS	A375_MHC_IP_R2	2	438.9683837890625	3	438.568863	1312.68476	-0.57219	-0.00025094	-0.1778	-7.7978E-05	-0.74999	-0.00032892	438.5687386355101	18.855	0.25997	19.458	19.423	19.683	0.60308					13	6	3	0	0	0	0.73388	1	5649	5649		5.1984	0	1	95980000			42860	1874	31416	31670	41804	41804					0.040925887096591396
REVELGLEY	9	Unmodified	_REVELGLEY_					0	0	0		ENST00000485501.5_1_22:39052673-39067032:+|nuORF;ENSG00000100211|ENST00000216029|CBY1;ENST00000492537.5_1_22:39052727-39067259:+|nuORF;ENST00000492576.5_1_22:39052705-39067032:+|nuORF	ENST00000485501.5_1_22:39052673-39067032:+|nuORF	ENST00000485501.5_1_22:39052673-39067032:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	554.68701171875	2	554.287671	1106.56079	-0.87795	-0.00048664	0.61586	0.00034137	-0.26208	-0.00014527	554.2880035788821	67.353	0.86461	67.353	66.99	67.854	0					29	16	2	0	0	0	0.40377	1	24387	24387		28.495	3.5035	1	2803200			42861	2134	31417	31671	41805	41805					0.011771178894605328
REVETLPRKY	10	Unmodified	_REVETLPRKY_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;ENSG00000152818|ENST00000367545|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	MULTI-MSMS	A375_MHC_IP_R1	1	431.3099365234375	3	430.910338	1289.70918	0.098816	4.2581E-05	-0.46356	-0.00019975	-0.36475	-0.00015717	430.9101316293507	21.517	0.81091	21.517	20.895	21.706	0					38	15	4	0	0	0	0.58344	1	5584	5584		22.109	9.2529	1	7556400			42862	5986	31418	31672	41806	41806					0.07591848863194173
REVETLPRKY	10	Unmodified	_REVETLPRKY_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;ENSG00000152818|ENST00000367545|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	MULTI-SECPEP	A375_MHC_IP_R1	1	431.3102722167969	3	430.910338	1289.70918	-0.034813	-1.5001E-05	-0.1104	-4.7571E-05	-0.14521	-6.2572E-05	430.91009464354187	23.049	0.25126	23.049	22.873	23.125	0					7	4	2	0	0	0	0.92518	1	6283	6283		11.065	1.301	1	3031200			42863	5986	31418	31672	41807	41807					0.07591848863194173
REVETLPRKY	10	Unmodified	_REVETLPRKY_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;ENSG00000152818|ENST00000367545|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	MULTI-MSMS	A375_MHC_IP_R2	2	430.9478759765625	3	430.910338	1289.70918	-0.53608	-0.000231	-0.41971	-0.00018086	-0.95579	-0.00041186	430.9102500797273	19.909	0.70811	20.519	20.044	20.752	0.61029					44	13	5	0	0	0	0.63381	1	6082	6082		18.34	9.5879	1	8205200			42864	5986	31418	31672	41808	41808					0.07591848863194173
REVEYFKRF	9	Unmodified	_REVEYFKRF_					0	0	0		ENSG00000125386|ENST00000637812|FAM193A;nc|ENSG00000125386|P78312-4|FAM193A;nc|ENSG00000125386|P78312-2|FAM193A;nc|ENSG00000125386|P78312-5|FAM193A;nc|ENSG00000125386|P78312|FAM193A;ENST00000513898.5_1_4:2717216-2733592:+|nuORF;ENST00000505569.5_1_5:176948978-176952218:-|nuORF;ENSG00000146067|ENST00000514747|FAM193B;nc|ENSG00000146067|Q96PV7-2|FAM193B;ENST00000510479.5_1_5:176948978-176959043:-|nuORF;nc|ENSG00000146067|Q96PV7|FAM193B	ENSG00000125386|ENST00000637812|FAM193A;nc|ENSG00000146067|Q96PV7-2|FAM193B	ENSG00000125386|ENST00000637812|FAM193A	MULTI-MSMS	A375_MHC_IP_R1	1	425.6277770996094	3	425.227779	1272.66151	0.0080407	3.4191E-06	-0.14613	-6.2138E-05	-0.13809	-5.8719E-05	425.2276470007493	35.904	0.45687	35.904	35.727	36.184	0					19	8	3	0	0	0	0.093901	1	11989	11989		51.765	38.246	1	4808700			42865	3957;12898	31419	31673	41809	41809					0.03608194662979258
REVEYFKRF	9	Unmodified	_REVEYFKRF_					0	0	0		ENSG00000125386|ENST00000637812|FAM193A;nc|ENSG00000125386|P78312-4|FAM193A;nc|ENSG00000125386|P78312-2|FAM193A;nc|ENSG00000125386|P78312-5|FAM193A;nc|ENSG00000125386|P78312|FAM193A;ENST00000513898.5_1_4:2717216-2733592:+|nuORF;ENST00000505569.5_1_5:176948978-176952218:-|nuORF;ENSG00000146067|ENST00000514747|FAM193B;nc|ENSG00000146067|Q96PV7-2|FAM193B;ENST00000510479.5_1_5:176948978-176959043:-|nuORF;nc|ENSG00000146067|Q96PV7|FAM193B	ENSG00000125386|ENST00000637812|FAM193A;nc|ENSG00000146067|Q96PV7-2|FAM193B	ENSG00000125386|ENST00000637812|FAM193A	MULTI-MSMS	A375_MHC_IP_R2	2	425.6277770996094	3	425.227779	1272.66151	-0.38033	-0.00016173	0.027081	1.1515E-05	-0.35325	-0.00015021	425.56213520374286	34.989	0.55511	35.752	35.475	36.03	0.76338					16	10	2	0	0	0	0.035228	1	12673	12673		70.496	50.509	1	4257000			42866	3957;12898	31419	31673	41810	41810					0.03608194662979258
REVGEKILKKY	11	Unmodified	_REVGEKILKKY_					0	0	0		ENSG00000205765|ENST00000381647|RIMOC1	ENSG00000205765|ENST00000381647|RIMOC1	ENSG00000205765|ENST00000381647|RIMOC1	MULTI-SECPEP	A375_MHC_IP_R1	1	455.6162414550781	3	454.941638	1361.80309	-0.2108	-9.59E-05	0.45018	0.00020481	0.23938	0.00010891	454.94178575516804	23.15	0.15189	23.15	23.024	23.176	0					4	2	2	0	0	0	0.99257	1	6305	6305		12.35	6.5669	1	1502400			42867	9526	31420	31674	41811	41811					0.13665567965449554
REVILPERW	9	Unmodified	_REVILPERW_					0	0	0		nc|ENSG00000169919|P08236-2|GUSB;ENSG00000169919|ENST00000304895|GUSB;nc|ENSG00000169919|P08236-3|GUSB;ENST00000476486.5_1_7:65444492-65445384:-|nuORF	nc|ENSG00000169919|P08236-2|GUSB	nc|ENSG00000169919|P08236-2|GUSB	MULTI-SECPEP	A375_MHC_IP_R1	1	400.2959289550781	3	399.89614	1196.66659	-0.25982	-0.0001039	0.77979	0.00031183	0.51997	0.00020793	399.89613811861534	59.281	0.81245	59.281	59.041	59.854	0					26	15	3	0	0	0	0.601	1	21329	21329		19.987	16.4	1	3685100			42868	7452	31421	31675	41812	41812					0.07612498525622868
REVILPERW	9	Unmodified	_REVILPERW_					0	0	0		nc|ENSG00000169919|P08236-2|GUSB;ENSG00000169919|ENST00000304895|GUSB;nc|ENSG00000169919|P08236-3|GUSB;ENST00000476486.5_1_7:65444492-65445384:-|nuORF	nc|ENSG00000169919|P08236-2|GUSB	nc|ENSG00000169919|P08236-2|GUSB	MULTI-SECPEP	A375_MHC_IP_R2	2	400.29571533203125	3	399.89614	1196.66659	-0.35709	-0.0001428	0.064929	2.5965E-05	-0.29216	-0.00011683	400.23059680170525	58.382	0.56067	59.131	58.879	59.44	0.74895					23	10	4	0	0	0	0.47206	1	22094	22094		32.898	26.706	1	3905400			42869	7452	31421	31675	41813	41813					0.07612498525622868
REVKRRLLEEL	11	Unmodified	_REVKRRLLEEL_					0	0	0		nc|ENSG00000164663|Q70CQ1-2|USP49;ENSG00000164663|ENST00000682992|USP49	nc|ENSG00000164663|Q70CQ1-2|USP49	nc|ENSG00000164663|Q70CQ1-2|USP49	MULTI-SECPEP	A375_MHC_IP_R2	2	361.63458251953125	4	360.971588	1439.85725	-0.46134	-0.00016653	1.062	0.00038335	0.60066	0.00021682	360.9723121805219	17.77	0.72157	18.366	18.065	18.787	0.59616					56	51	2	0	0	0	1.0015	1	5329	5329		0.08335	0.010087	1	213320			42870	6862	31422	31676	41814	41814					0.15491160117062464
REVQEKIEQKY	11	Unmodified	_REVQEKIEQKY_					0	0	0		ENSG00000144834|ENST00000478951|TAGLN3	ENSG00000144834|ENST00000478951|TAGLN3	ENSG00000144834|ENST00000478951|TAGLN3	MULTI-MSMS	A375_MHC_IP_R1	1	484.327880859375	3	483.928057	1448.76234	-0.46252	-0.00022383	-1.3319	-0.00064456	-1.7945	-0.00086839	483.9281818646042	19.394	0.48709	19.394	19.238	19.725	0					17	9	3	0	0	0	0.19525	1	4825	4825		54.823	33.581	1	6405400			42871	5520	31423	31677	41815	41815					0.05591181855174909
REVRIGHRL	9	Unmodified	_REVRIGHRL_					0	0	0		ENST00000310441.11_1_X:153237088-153237172:-|nuORF	ENST00000310441.11_1_X:153237088-153237172:-|nuORF	ENST00000310441.11_1_X:153237088-153237172:-|nuORF	MSMS	A375_MHC_IP_R2	2	379.27716064453125	3	379.231746	1134.67341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.706	1	28.384	27.884	28.884	0.67857								0	0	0	0.15486	1	9502	9502		8.1555	0	1				42872	10621	31424	31678	41816	41816					0.11145856196844761
REVRQKSQY	9	Unmodified	_REVRQKSQY_					0	0	0			REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	MULTI-SECPEP	A375_MHC_IP_R1	1	398.9523010253906	3	398.551033	1192.63127	-0.23467	-9.3529E-05	2.8214	0.0011245	2.5867	0.0010309	398.5519082345987	25.434	0.35733	25.434	25.306	25.664	0					12	6	2	0	0	0	0.77003	1	7456	7456		11.495	7.9077	1	6135900	+		42873	16526	31425	31679	41817	41817					0.04265835997830436
REVWPEGDVF	10	Unmodified	_REVWPEGDVF_					0	0	0		nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS;ENST00000557589.1_1_12:56817199-56818568:-|nuORF	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-MSMS	A375_MHC_IP_R2	2	617.69873046875	2	617.29857	1232.58259	-0.49545	-0.00030584	-0.37766	-0.00023313	-0.87311	-0.00053897	617.2985325003528	86.141	0.56004	86.874	86.54	87.1	0.733					18	10	3	0	0	0	0.60385	1	32765	32765		20.581	4.7337	1	2048200			42874	3000	31426	31680	41818	41818					-0.02440077361961812
REWAIKKHL	9	Unmodified	_REWAIKKHL_					0	0	0		ENST00000476826.5_1_6:160210904-160219152:+|nuORF;ENSG00000112110|ENST00000367034|MRPL18	ENST00000476826.5_1_6:160210904-160219152:+|nuORF	ENST00000476826.5_1_6:160210904-160219152:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	394.60845947265625	3	394.236497	1179.68766	-0.20964	-8.2649E-05	0.00071396	2.8147E-07	-0.20893	-8.2368E-05	394.23644846537553	24.017	0.45792	24.017	23.838	24.296	0					11	8	2	0	0	0	0.30259	1	6717	6717		30.431	17.559	1	6629900			42875	3049	31427	31681	41819	41819					0.10500508625136717
REWAIKKHL	9	Unmodified	_REWAIKKHL_					0	0	0		ENST00000476826.5_1_6:160210904-160219152:+|nuORF;ENSG00000112110|ENST00000367034|MRPL18	ENST00000476826.5_1_6:160210904-160219152:+|nuORF	ENST00000476826.5_1_6:160210904-160219152:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	394.6085510253906	3	394.236497	1179.68766	-0.4904	-0.00019333	-0.32105	-0.00012657	-0.81145	-0.0003199	394.2363697841994	23.19	0.35595	23.82	23.623	23.979	0.63015					10	6	2	0	0	0	0.30259	2	7415	7415;7446		30.431	18.257	1	3757200			42876	3049	31427	31681	41820;41821	41820					0.10500508625136717
REWEEESLS	9	Unmodified	_REWEEESLS_					0	0	0		WDR93|p.P349S|1|0.13|ENSG00000140527|chr15:89727321-89727321|C/T|missense_variant	WDR93|p.P349S|1|0.13|ENSG00000140527|chr15:89727321-89727321|C/T|missense_variant	WDR93|p.P349S|1|0.13|ENSG00000140527|chr15:89727321-89727321|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	582.75048828125	2	582.762017	1163.50948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.317	1	98.317	97.817	98.817	0								0	0	0	0.15486	1	36123	36123		7.9102	0	1				42877	30163	31428	31682	41822	41822					-0.06573250875226222
REWEQRRRKER	11	Unmodified	_REWEQRRRKER_					0	0	0			REV__ENSG00000159450|ENST00000614923|TCHH	REV__ENSG00000159450|ENST00000614923|TCHH	MULTI-MSMS	A375_MHC_IP_R1	1	544.0325317382812	3	543.632861	1627.87675	-0.53661	-0.00029172	-0.737	-0.00040066	-1.2736	-0.00069238	543.6326750673015	96.452	0.55902	96.452	96.171	96.73	0					21	10	3	0	0	0	0.73818	1	35470	35470		1.1098	0.65524	1	2710600	+		42878	20121	31429	31683	41823	41823					0.08792929180481224
REWEQRRRKER	11	Unmodified	_REWEQRRRKER_					0	0	0			REV__ENSG00000159450|ENST00000614923|TCHH	REV__ENSG00000159450|ENST00000614923|TCHH	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	543.632861	1627.87675	-0.53661	-0.00029172	-0.737	-0.00040066	-1.2736	-0.00069238	543.6326750673015	96.452	0.55902	96.452	96.171	96.73	0	0.027284	0.00031628	NaN	1.1098	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2710600	+		42879	20121	31429	31683							0.08792929180481224
REWKEQGSKTF	11	Unmodified	_REWKEQGSKTF_					0	0	0		nc|ENSG00000116133|Q15392-2|DHCR24;ENSG00000116133|ENST00000371269|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	MULTI-MSMS	A375_MHC_IP_R1	1	466.30511474609375	3	465.905364	1394.69426	-0.19886	-9.2648E-05	-0.21007	-9.7875E-05	-0.40893	-0.00019052	465.90528043252885	20.206	0.507	20.206	19.877	20.384	0					30	9	4	0	0	0	0.00051056	1	5111	5111		95.022	77.974	1	17762000			42880	3373	31430	31684	41824	41824					0.012703569951554528
REWNRDVQY	9	Unmodified	_REWNRDVQY_					0	0	0		ENST00000512790.5_1_5:112197073-112227301:+|nuORF;nc|ENSG00000153037|P09132-2|SRP19;ENSG00000153037|ENST00000505459|SRP19	ENST00000512790.5_1_5:112197073-112227301:+|nuORF	ENST00000512790.5_1_5:112197073-112227301:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	422.93890380859375	3	422.538904	1264.59488	0.075929	3.2083E-05	-0.10043	-4.2434E-05	-0.024498	-1.0351E-05	422.53880797112924	28.617	0.35437	28.617	28.491	28.845	0					10	6	2	0	0	0	0.4875	1	8893	8893		14.957	7.4801	1	3426500			42881	5999	31431	31685	41825	41825					-0.02683040898909894
REWNRDVQY	9	Unmodified	_REWNRDVQY_					0	0	0		ENST00000512790.5_1_5:112197073-112227301:+|nuORF;nc|ENSG00000153037|P09132-2|SRP19;ENSG00000153037|ENST00000505459|SRP19	ENST00000512790.5_1_5:112197073-112227301:+|nuORF	ENST00000512790.5_1_5:112197073-112227301:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	422.93878173828125	3	422.538904	1264.59488	-0.20919	-8.8393E-05	0.28946	0.00012231	0.080263	3.3914E-05	422.53893307615215	27.963	0.30529	28.641	28.502	28.808	0.67857					13	5	3	0	0	0	0.68705	1	9671	9671		5.4027	1.81	1	2238600			42882	5999	31431	31685	41826	41826					-0.02683040898909894
REWNRDVQY	9	Unmodified	_REWNRDVQY_					0	0	0		ENST00000512790.5_1_5:112197073-112227301:+|nuORF;nc|ENSG00000153037|P09132-2|SRP19;ENSG00000153037|ENST00000505459|SRP19	ENST00000512790.5_1_5:112197073-112227301:+|nuORF	ENST00000512790.5_1_5:112197073-112227301:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	422.538904	1264.59488	-0.20919	-8.8393E-05	0.28946	0.00012231	0.080263	3.3914E-05	422.53893307615215	27.963	0.30529	28.641	28.502	28.808	0.67857	0.012102	0.00024415	NaN	14.957	13	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2238600			42883	5999	31431	31685							-0.02683040898909894
REWSGKEKW	9	Unmodified	_REWSGKEKW_					0	0	0		nc|ENSG00000163346|Q96AQ6-3|PBXIP1;nc|ENSG00000163346|Q96AQ6-2|PBXIP1;ENSG00000163346|ENST00000368463|PBXIP1	nc|ENSG00000163346|Q96AQ6-3|PBXIP1	nc|ENSG00000163346|Q96AQ6-3|PBXIP1	MULTI-SECPEP	A375_MHC_IP_R1	1	402.9404296875	3	402.540245	1204.59891	-0.32603	-0.00013124	0.97195	0.00039125	0.64592	0.00026001	402.54027511773626	23.1	0.30264	23.1	22.924	23.227	0					13	5	3	0	0	0	0.39266	1	6291	6291		38.161	19.439	1	7905500			42884	6650	31432	31686	41827	41827					0.004790485948205969
REYEAQQQY	9	Unmodified	_REYEAQQQY_					0	0	0		ENST00000473311.5_1_3:183906074-183911483:+|nuORF;nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000468892.5_1_3:183907488-183910505:+|nuORF	ENST00000473311.5_1_3:183906074-183911483:+|nuORF	ENST00000473311.5_1_3:183906074-183911483:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	608.1754150390625	2	607.775459	1213.53637	-0.12343	-7.5017E-05	-0.26693	-0.00016224	-0.39036	-0.00023725	607.7752902271981	21.122	0.4053	21.122	20.895	21.301	0					20	7	4	0	0	0	0.025037	1	5494	5494		110.55	110.55	1	11444000			42885	6468	31433	31687	41828	41828					-0.061861422640504315
REYEAQQQY	9	Unmodified	_REYEAQQQY_					0	0	0		ENST00000473311.5_1_3:183906074-183911483:+|nuORF;nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000468892.5_1_3:183907488-183910505:+|nuORF	ENST00000473311.5_1_3:183906074-183911483:+|nuORF	ENST00000473311.5_1_3:183906074-183911483:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	608.2022094726562	2	607.775459	1213.53637	-0.71934	-0.0004372	0.11864	7.2107E-05	-0.6007	-0.00036509	607.77542273531	19.667	0.60751	20.277	19.993	20.6	0.61029					26	11	4	0	0	0	0.10362	1	6103	6103		72.968	48.947	1	6689500			42886	6468	31433	31687	41829	41829					-0.061861422640504315
REYEIEFIY	9	Unmodified	_REYEIEFIY_					0	0	0		nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA	nc|ENSG00000198408|O60502-3|OGA	nc|ENSG00000198408|O60502-3|OGA	MULTI-MSMS	A375_MHC_IP_R1	1	631.7556762695312	2	631.308603	1260.60265	-0.56015	-0.00035363	0.25516	0.00016108	-0.30499	-0.00019254	631.3088059175499	97.609	0.81252	97.609	97.238	98.05	0					36	15	3	0	0	0	0.59266	1	35809	35809		15.248	3.0078	1	7378600			42887	9267	31434	31688	41830	41830					-0.017223264219865086
REYEIEFIY	9	Unmodified	_REYEIEFIY_					0	0	0		nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA	nc|ENSG00000198408|O60502-3|OGA	nc|ENSG00000198408|O60502-3|OGA	MULTI-MSMS	A375_MHC_IP_R2	2	631.7081298828125	2	631.308603	1260.60265	-0.97774	-0.00061726	0.0032722	2.0658E-06	-0.97447	-0.00061519	631.3086698785244	96.893	0.75888	97.649	97.318	98.077	0.75587					34	14	3	0	0	0	0.59266	1	36750	36750		15.248	3.0078	1	5714300			42888	9267	31434	31688	41831	41831					-0.017223264219865086
REYEIEFIY	9	Unmodified	_REYEIEFIY_					0	0	0		nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA	nc|ENSG00000198408|O60502-3|OGA	nc|ENSG00000198408|O60502-3|OGA	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	631.308603	1260.60265	-0.56015	-0.00035363	0.25516	0.00016108	-0.30499	-0.00019254	631.3088059175499	97.609	0.81252	97.609	97.238	98.05	0	-0.019891	0.00012539	NaN	15.248	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7378600			42889	9267	31434	31688							-0.017223264219865086
REYEIEFIY	9	Unmodified	_REYEIEFIY_					0	0	0		nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA	nc|ENSG00000198408|O60502-3|OGA	nc|ENSG00000198408|O60502-3|OGA	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	631.308603	1260.60265	-0.97774	-0.00061726	0.0032722	2.0658E-06	-0.97447	-0.00061519	631.3086698785244	96.893	0.75888	97.649	97.318	98.077	0.75587	0.019891	-0.00019264	NaN	15.248	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5714300			42890	9267	31434	31688							-0.017223264219865086
REYELRKNNF	10	Unmodified	_REYELRKNNF_					0	0	0		nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF	nc|ENSG00000142676|P62913-2|RPL11	nc|ENSG00000142676|P62913-2|RPL11	MULTI-MSMS	A375_MHC_IP_R1	1	457.6393737792969	3	456.905476	1367.6946	-0.43392	-0.00019826	0.30834	0.00014088	-0.12558	-5.738E-05	456.90546642449374	24.22	0.45565	24.22	24.092	24.547	0					25	8	4	0	0	0	0.60385	1	6846	6846		23.016	16.392	1	11327000			42891	5326	31435	31689	41832	41832					0.025457767150328436
REYGPVYSTW	10	Unmodified	_REYGPVYSTW_					0	0	0		ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	MULTI-SECPEP	A375_MHC_IP_R1	1	629.6987915039062	2	629.29857	1256.58259	-0.9784	-0.00061571	0.73469	0.00046234	-0.24371	-0.00015336	629.299110395239	67.68	0.55584	67.68	67.399	67.955	0					27	10	3	0	0	0	0.46767	1	24494	24494		70.929	39.66	1	11164000			42892	5719	31436	31690	41833	41833					-0.03544077361948439
REYGPVYSTW	10	Unmodified	_REYGPVYSTW_					0	0	0		ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	MULTI-MSMS	A375_MHC_IP_R2	2	629.6983642578125	2	629.29857	1256.58259	-0.87494	-0.0005506	0.25898	0.00016297	-0.61597	-0.00038763	629.2988308397366	66.988	0.60812	67.724	67.393	68.001	0.73631					28	11	3	0	0	0	0.094079	1	25346	25346		64.927	31.482	1	10218000			42893	5719	31436	31690	41834	41834					-0.03544077361948439
REYLKLDKW	9	Unmodified	_REYLKLDKW_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q831Sfs*11|1|0.38|ENSG00000125107|chr16:58555897-58555898|-/A|frameshift_variant	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	A375_MHC_IP_R1	1	418.3207092285156	3	417.567912	1249.68191	0.18096	7.5565E-05	-0.094913	-3.9633E-05	0.086052	3.5933E-05	417.5677005844274	47.358	0.51349	47.358	47.003	47.517	0					19	9	3	0	0	0	0.13199	1	16648	16648		64.692	39.81	1	3970100			42894	3941	31437	31691	41835	41835					0.06705365322773105
REYLKLDKW	9	Unmodified	_REYLKLDKW_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q831Sfs*11|1|0.38|ENSG00000125107|chr16:58555897-58555898|-/A|frameshift_variant	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	A375_MHC_IP_R2	2	417.9678955078125	3	417.567912	1249.68191	0.073709	3.0778E-05	-0.38235	-0.00015966	-0.30864	-0.00012888	417.56766103717695	46.42	0.45819	47.185	47.008	47.466	0.76519					18	8	3	0	0	0	0.077986	1	17395	17395		68.484	39.047	1	4490700			42895	3941	31437	31691	41836	41836					0.06705365322773105
REYLNPLHY	9	Unmodified	_REYLNPLHY_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1;nc|ENSG00000095564|O14981-2|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-MSMS	A375_MHC_IP_R1	1	402.9430236816406	3	402.208495	1203.60366	-0.33661	-0.00013539	1.1216	0.00045111	0.78498	0.00031573	402.2089018749054	52.244	0.40463	52.244	51.982	52.387	0					16	7	3	0	0	0	0.2487	1	18577	18577		26.021	21.305	1	2914300			42896	2045	31438	31692	41837	41837					0.009999327375680878
REYLNPLHY	9	Unmodified	_REYLNPLHY_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1;nc|ENSG00000095564|O14981-2|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-MSMS	A375_MHC_IP_R1	1	603.2091674804688	2	602.809105	1203.60366	-0.32699	-0.00019711	1.0479	0.0006317	0.72093	0.00043458	602.8098304221899	52.2	0.45596	52.2	51.982	52.438	0					19	8	3	0	0	0	0.29123	1	18605	18605		31.268	0	1	4805400			42897	2045	31438	31692	41838	41838					0.009999327375680878
REYLNPLHY	9	Unmodified	_REYLNPLHY_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1;nc|ENSG00000095564|O14981-2|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-MSMS	A375_MHC_IP_R2	2	402.6083984375	3	402.208495	1203.60366	-0.20114	-8.0902E-05	0.051515	2.072E-05	-0.14963	-6.0182E-05	402.2085010396011	51.464	0.40578	52.216	51.966	52.372	0.75225					13	7	2	0	0	0	0.64136	1	19395	19395		8.4443	4.2548	1	2450000			42898	2045	31438	31692	41839	41839					0.009999327375680878
REYPDAQGF	9	Unmodified	_REYPDAQGF_					0	0	0		nc|ENSG00000169925|Q15059-2|BRD3;ENSG00000169925|ENST00000303407|BRD3	nc|ENSG00000169925|Q15059-2|BRD3	nc|ENSG00000169925|Q15059-2|BRD3	MULTI-SECPEP	A375_MHC_IP_R2	2	542.147705078125	2	541.748713	1081.48287	-1.079	-0.00058454	0.068773	3.7258E-05	-1.0102	-0.00054729	541.7486963878499	38.916	0.6657	39.69	39.351	40.016	0.77451					21	12	3	0	0	0	0.36673	1	14354	14354		38.615	7.9782	1	3996700			42899	7453	31439	31693	41840	41840					-0.05460894975908559
REYPERGDTW	10	Unmodified	_REYPERGDTW_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-SECPEP	A375_MHC_IP_R1	1	437.2701416015625	3	436.870431	1307.58946	-0.24947	-0.00010899	0.031911	1.3941E-05	-0.21756	-9.5044E-05	436.87037253874	27.298	0.45488	27.298	27.027	27.482	0					18	8	3	0	0	0	0.92295	1	8280	8280		15.538	7.0941	1	2754300			42900	3602	31440	31694	41841	41841					-0.05202764481373379
REYPERGDTW	10	Unmodified	_REYPERGDTW_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-SECPEP	A375_MHC_IP_R2	2	437.27008056640625	3	436.870431	1307.58946	-0.63039	-0.0002754	0.087705	3.8316E-05	-0.54269	-0.00023708	436.870470964717	26.685	0.45909	27.345	27.109	27.568	0.65992					14	8	2	0	0	0	0.84395	1	9055	9055		27.289	19.812	1	3468800			42901	3602	31440	31694	41842	41842					-0.05202764481373379
REYPNLVTI	9	Unmodified	_REYPNLVTI_					0	0	0		nc|ENSG00000135899|Q9HB58-5|SP110;nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110	nc|ENSG00000135899|Q9HB58-5|SP110	nc|ENSG00000135899|Q9HB58-5|SP110	MULTI-SECPEP	A375_MHC_IP_R2	2	552.16552734375	2	552.806031	1103.59751	-0.8345	-0.00046132	0.16099	8.8998E-05	-0.6735	-0.00037232	552.8060495091056	72.959	1.4209	73.694	72.671	74.091	0.73541					33	27	2	0	0	0	0.70759	1	27494	27494		16.149	16.149	1	1445300			42902	4723	31441	31695	41843	41843					0.04985414506040797
REYQLEGVNW	10	Unmodified	_REYQLEGVNW_					0	0	0		CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7;nc|ENSG00000171316|Q9P2D1-2|CHD7;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8;ENST00000554384.1_1_14:21876861-21881122:-|nuORF	CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8	ENSG00000100888|ENST00000646647|CHD8	MULTI-MSMS	A375_MHC_IP_R2	2	647.71435546875	2	647.314751	1292.61495	-0.72844	-0.00047153	0.046243	2.9934E-05	-0.6822	-0.0004416	647.3147547493811	74.688	0.35629	75.426	75.214	75.57	0.73752					9	6	2	0	0	0	0.68952	1	28367	28367		20.581	11.836	1	1271700			42903	2228;387	31442	31696	41844	41844					-0.01965289958957328
REYTWNQTNKK	11	Unmodified	_REYTWNQTNKK_					0	0	0			REV__tr|U7SED1|U7SED1_FUSNUTranscriptionantiterminationproteinNusBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusBPE=3SV=1	REV__tr|U7SED1|U7SED1_FUSNUTranscriptionantiterminationproteinNusBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusBPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	490.6766357421875	3	489.916152	1466.72663	-0.047306	-2.3176E-05	-0.13251	-6.4917E-05	-0.17981	-8.8093E-05	489.9161011864343	45.509	0.35346	45.509	45.384	45.738	0					8	6	2	0	0	0	0.99916	1	15965	15965		4.4062	2.4786	1	2018400	+		42904	28159	31443	31697	41845	41845					0.011931443981666234
REYVRALEY	9	Unmodified	_REYVRALEY_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	600.2147216796875	2	599.814387	1197.61422	-0.32399	-0.00019433	0.18687	0.00011209	-0.13711	-8.2243E-05	599.8145829029332	39.357	0.50711	39.357	39.136	39.643	0					18	9	3	0	0	0	0.39434	1	13436	13436		24.991	6.8446	1	3809900			42905	9008	31444	31698	41846	41846					0.023319153920056124
RFANWRRKLRW	11	Unmodified	_RFANWRRKLRW_					0	0	0			REV__ENST00000505606.6_1_5:43121886-43122210:+|nuORF	REV__ENST00000505606.6_1_5:43121886-43122210:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	529.6868286132812	3	530.307649	1587.90112	-0.7479	-0.00039662	3.1064	0.0016473	2.3585	0.0012507	530.6425681890643	84.267	0.45399	84.267	83.937	84.391	0					9	8	2	0	0	0	1.0014	1	30740	30740		0.50596	0.41111	1	1151800	+		42906	25536	31445	31699	41847	41847					0.13068234124671108
RFASPLLDGAP	11	Unmodified	_RFASPLLDGAP_					0	0	0			REV__ENSG00000180921|ENST00000388913|FAM83H	REV__ENSG00000180921|ENST00000388913|FAM83H	MULTI-MSMS	A375_MHC_IP_R2	2	382.276611328125	3	381.876746	1142.60841	-0.23505	-8.9761E-05	0.2616	9.99E-05	0.026551	1.0139E-05	381.8767822226717	54.844	0.7142	55.595	55.32	56.034	0.75075					29	13	3	0	0	0	0.67023	1	20672	20672		17.863	17.863	1	8581700	+		42907	21629	31446	31700	41848	41848					0.0428081688032762
RFASPLLDGAP	11	Unmodified	_RFASPLLDGAP_					0	0	0			REV__ENSG00000180921|ENST00000388913|FAM83H	REV__ENSG00000180921|ENST00000388913|FAM83H	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	381.876746	1142.60841	0.41076	0.00015686	-0.19036	-7.2692E-05	0.22041	8.4169E-05	381.87664050274816	55.938	0.86468	55.938	55.482	56.347	0	0.17162	-0.00022305	NaN	17.863	37	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7521300	+		42908	21629	31446	31700							0.0428081688032762
RFDHAWESI	9	Unmodified	_RFDHAWESI_					0	0	0			REV__WRN|p.G677A|1|0.29|ENSG00000165392|chr8:31100897-31100897|G/C|missense_variant	REV__WRN|p.G677A|1|0.29|ENSG00000165392|chr8:31100897-31100897|G/C|missense_variant	MSMS	A375_MHC_IP_R2	2	387.44537353515625	3	387.520962	1159.54106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.947	1	38.722	38.222	39.222	0.77451								0	0	0	0.15486	1	13926	13926		2.7352	0.23671	1		+		42909	29000	31447	31701	41849	41849					-0.03233213330622675
RFEEEFIKMRM	11	Unmodified	_RFEEEFIKMRM_					0	0	0		ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	MULTI-MSMS	A375_MHC_IP_R2	2	758.775390625	2	758.375972	1514.73739	-0.92301	-0.00069999	-0.37874	-0.00028723	-1.3018	-0.00098722	758.3757373921208	82.376	0.81206	83.119	82.735	83.547	0.74293					50	15	5	0	0	0	0.72801	1	31241	31241		10.8	1.2555	1	71077000			42910	4237	31448	31702	41850	41850					0.0006108745656092651
RFEVPNITIG	10	Unmodified	_RFEVPNITIG_					0	0	0			REV__ENST00000376236.8_1_10:26856521-26856626:+|nuORF	REV__ENST00000376236.8_1_10:26856521-26856626:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	382.94842529296875	3	382.548629	1144.62406	-0.11448	-4.3795E-05	-0.28048	-0.0001073	-0.39496	-0.00015109	382.54848426932176	30.553	0.40282	31.272	31.064	31.467	0.71857					15	7	3	0	0	0	0.70012	1	10761	10761		7.4771	0.37534	1	3308400	+		42911	24140	31449	31703	41851	41851					0.05753103397364612
RFFDGELTKV	10	Unmodified	_RFFDGELTKV_					0	0	0		nc|ENSG00000113552|P46926-2|GNPDA1;ENSG00000113552|ENST00000311337|GNPDA1;ENST00000507559.1_1_5:141384487-141385853:-|nuORF	nc|ENSG00000113552|P46926-2|GNPDA1	nc|ENSG00000113552|P46926-2|GNPDA1	MULTI-SECPEP	A375_MHC_IP_R1	1	606.7245483398438	2	606.324588	1210.63462	-0.42022	-0.00025479	0.27328	0.0001657	-0.14694	-8.9096E-05	606.3247352149482	65.122	0.3024	65.122	64.954	65.257	0					14	5	3	0	0	0	0.92724	1	23592	23592		20.581	4.7337	1	2252300			42912	3159	31450	31704	41852	41852					0.03773086051796781
RFFEEVNDP	9	Unmodified	_RFFEEVNDP_					0	0	0		ENSG00000072778|ENST00000356839|ACADVL;nc|ENSG00000072778|P49748-3|ACADVL;nc|ENSG00000072778|P49748-2|ACADVL;ACADVL|p.I373Nfs*22|1|0.49|ENSG00000072778|chr17:7223168-7223169|-/A|frameshift_variant;ENST00000581562.5_1_17:7123303-7125294:+|nuORF;ENST00000577191.5_1_17:7123303-7125473:+|nuORF	ENSG00000072778|ENST00000356839|ACADVL	ENSG00000072778|ENST00000356839|ACADVL	MULTI-SECPEP	A375_MHC_IP_R2	2	385.24871826171875	3	384.848856	1151.52474	-0.39969	-0.00015382	2.0529	0.00079006	1.6532	0.00063624	384.8487249814993	19.234	0.60675	19.838	19.583	20.19	0.60308					23	11	3	0	0	0	0.775	1	5909	5909		4.1895	0	1	4775600			42913	1546	31451	31705	41853	41853					-0.04496339287379669
RFFFEDWDYTY	11	Unmodified	_RFFFEDWDYTY_					0	0	0		ENSG00000187616|ENST00000339996|MYMK	ENSG00000187616|ENST00000339996|MYMK	ENSG00000187616|ENST00000339996|MYMK	MULTI-MSMS	A375_MHC_IP_R1	1	530.6347045898438	3	530.229625	1587.66705	-0.62123	-0.00032939	2.4145	0.0012802	1.7933	0.00095084	530.5644485923308	34.278	0.86077	34.278	33.898	34.759	0					36	16	4	0	0	0	0.73239	1	11221	11221		6.6235	2.5068	1	14149000			42914	8841	31452	31706	41854	41854					-0.10328171335845582
RFFKERINEPE	11	Unmodified	_RFFKERINEPE_					0	0	0			REV__ZBED9|p.M222I|1|0.16|ENSG00000232040|chr6:28576039-28576039|C/T|missense_variant	REV__ZBED9|p.M222I|1|0.16|ENSG00000232040|chr6:28576039-28576039|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	733.2815551757812	2	732.883333	1463.75211	-0.46142	-0.00033817	-0.69696	-0.00051079	-1.1584	-0.00084896	732.8827006407631	96.853	0.70845	96.853	96.529	97.238	0					34	13	4	0	0	0	0.9889	1	35556	35556		12.241	7.3436	1	6821800	+		42915	29011	31453	31707	41855	41855					0.03878618920612098
RFFLILIL	8	Unmodified	_RFFLILIL_					0	0	0		Tigger16a_dup1470|chr15:48144722-48144890:-|3.5084548021972086|0.1060375097122897|5.05|459.0|16|3|anti-sense	Tigger16a_dup1470|chr15:48144722-48144890:-|3.5084548021972086|0.1060375097122897|5.05|459.0|16|3|anti-sense	Tigger16a_dup1470|chr15:48144722-48144890:-|3.5084548021972086|0.1060375097122897|5.05|459.0|16|3|anti-sense	MULTI-MSMS	A375_MHC_IP_R1	1	1034.7872314453125	1	1034.6761	1033.66882	0.28644	0.00029637	2.4479	0.0025328	2.7343	0.0028291	1034.6782182834736	111.08	0.15332	111.08	110.95	111.1	0					4	2	2	0	0	0	0.77861	1	40687	40687		0	0	1	1017100			42916	29344	31454	31708	41856	41856					0.15333579001389808
RFFYSKSFVK	10	Unmodified	_RFFYSKSFVK_					0	0	0		nc|ENSG00000163660|Q9UK58-6|CCNL1;ENSG00000163660|ENST00000295926|CCNL1;nc|ENSG00000163660|Q9UK58-5|CCNL1;ENST00000471044.1_1_3:156876653-156877916:-|nuORF;nc|ENSG00000163660|Q9UK58-4|CCNL1;ENST00000466101.1_1_3:156877139-156877916:-|nuORF	nc|ENSG00000163660|Q9UK58-6|CCNL1;ENST00000466101.1_1_3:156877139-156877916:-|nuORF	nc|ENSG00000163660|Q9UK58-6|CCNL1	MSMS	A375_MHC_IP_R1	1	436.93145751953125	3	436.908157	1307.70264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.4	1	33.4	32.9	33.9	0								0	0	0	0.15479	1	10900	10900		2.8433	0.93691	1				42917	6704;12255	31455	31709	41857	41857					0.061099557024363094
RFGGYYNWCM	10	Unmodified	_RFGGYYNWCM_					0	0	0			REV__EFEMP1|p.H354Y|1|0.24|ENSG00000115380|chr2:55871064-55871064|G/A|missense_variant	REV__EFEMP1|p.H354Y|1|0.24|ENSG00000115380|chr2:55871064-55871064|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	649.1666259765625	2	648.768068	1295.52158	-0.73887	-0.00047936	-0.73868	-0.00047923	-1.4776	-0.00095859	648.7673596950431	32.57	0.61013	33.306	33.061	33.671	0.73692					21	11	2	0	0	0	0.69306	1	11634	11634		13.906	5.9959	1	5897400	+		42918	16067	31456	31710	41858	41858					-0.11435628937420006
RFGKDAVGERY	11	Unmodified	_RFGKDAVGERY_					0	0	0		ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	433.2472229003906	3	433.226438	1296.65748	-0.31943	-0.00013839	-0.14178	-6.1425E-05	-0.46122	-0.00019981	433.22660493045566	32.873	0.55922	33.61	33.265	33.825	0.73692					14	10	2	0	0	0	0.73472	1	11602	11602		4.4062	1.0865	1	2450700			42919	192	31457	31711	41859	41859					0.02102105169274182
RFGQFLLKR	9	Unmodified	_RFGQFLLKR_					0	0	0			REV__ENST00000497784.1_2_7:140434399-140508041:-|nuORF	REV__ENST00000497784.1_2_7:140434399-140508041:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	388.95587158203125	3	388.904859	1163.69275	0.047741	1.8567E-05	-1.3761	-0.00053518	-1.3284	-0.00051662	388.9042307816602	27.683	0.70734	27.683	27.229	27.937	0					17	13	2	0	0	0	0.50892	1	8521	8521		19.362	8.5624	1	1484900	+		42920	20041	31458	31712	41860	41860					0.11744812487745548
RFHLRLLR	8	Unmodified	_RFHLRLLR_					0	0	0		ENST00000359513.8_1_11:46667456-46670726:+|nuORF	ENST00000359513.8_1_11:46667456-46670726:+|nuORF	ENST00000359513.8_1_11:46667456-46670726:+|nuORF	MSMS	A375_MHC_IP_R2	2	370.9415283203125	3	370.905082	1109.69342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.601	1	22.221	21.721	22.721	0.61932								0	0	0	0.16876	1	6815	6815		1.6526	0	1				42921	11015	31459	31713	41861	41861					0.14295651927432118
RFKCVFKILL	10	Unmodified	_RFKCVFKILL_					0	0	0		ENST00000264255.7_1_2:99935913-99936123:-|nuORF	ENST00000264255.7_1_2:99935913-99936123:-|nuORF	ENST00000264255.7_1_2:99935913-99936123:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	633.7684326171875	2	633.891386	1265.76822	-0.60405	-0.0003829	0.23703	0.00015025	-0.36702	-0.00023265	633.8912426492666	149.33	2.1992	149.35	147.81	150.01	0.018265					245	81	4	0	0	0	0.95034	1	57837	57837		0.40072	0.050084	1	1394300			42922	10333	31460	31714	41862	41862					0.14596653623834754
RFKKKKRFK	9	Unmodified	_RFKKKKRFK_					0	0	0			REV__ENSG00000067334|ENST00000436063|DNTTIP2	REV__ENSG00000067334|ENST00000436063|DNTTIP2	MSMS	A375_MHC_IP_R1	1	633.5381469726562	2	633.419491	1264.82443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.99	1	146.99	146.49	147.49	0								0	0	0	0.15486	1	56207	56207		0	0	1		+		42923	16531	31461	31715	41863	41863					0.20261042575475585
RFKKRWSPARR	11	Unmodified	_RFKKRWSPARR_					0	0	0			REV__nc|ENSG00000131626|Q13136-2|PPFIA1	REV__nc|ENSG00000131626|Q13136-2|PPFIA1	MULTI-SECPEP	A375_MHC_IP_R1	1	371.95599365234375	4	372.725918	1486.87457	0.18617	6.9389E-05	-0.65366	-0.00024364	-0.4675	-0.00017425	372.9763279852752	24.448	0.30117	24.448	24.296	24.597	0					7	5	2	0	0	0	1.0011	1	7017	7017		1.3296	0.82369	1	1210100	+		42924	18614	31462	31716	41864	41864					0.15060545233336597
RFKPVVFKF	9	Unmodified	_RFKPVVFKF_					0	0	0		ENST00000560292.2_1_15:102277413-102284889:-|nuORF	ENST00000560292.2_1_15:102277413-102284889:-|nuORF	ENST00000560292.2_1_15:102277413-102284889:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	584.757080078125	2	584.355494	1166.69644	-0.057703	-3.3719E-05	1.1212	0.00065517	1.0635	0.00062145	584.3560585427153	127.95	2.1835	127.95	127.06	129.25	0					69	42	3	0	0	0	0.75523	1	49176	49176		2.0598	0.21551	1	81379000			42925	13490	31463	31717	41865	41865					0.11975482261595971
RFKSIRTLS	9	Unmodified	_RFKSIRTLS_					0	0	0			REV__ENSG00000156414|ENST00000409874|TDRD9	REV__ENSG00000156414|ENST00000409874|TDRD9	MULTI-MSMS	A375_MHC_IP_R1	1	370.2925720214844	3	369.892619	1106.65603	0.20339	7.5231E-05	0.89079	0.0003295	1.0942	0.00040473	369.89316997667464	19.598	0.50868	19.598	19.318	19.827	0					12	8	2	0	0	0	0.6898	1	4966	4966		4.897	0	1	1510600	+		42926	19981	31464	31718	41866	41866					0.10696515871200063
RFKSIRTLS	9	Unmodified	_RFKSIRTLS_					0	0	0			REV__ENSG00000156414|ENST00000409874|TDRD9	REV__ENSG00000156414|ENST00000409874|TDRD9	MULTI-MATCH	A375_MHC_IP_R2	2		3	369.892619	1106.65603	0.04666	1.7259E-05	0.62623	0.00023164	0.67289	0.0002489	370.2274526064877	18.877	0.14512	19.48	19.438	19.583	0.60308	-0.05884	-0.00014985	NaN	4.897	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10261000	+		42927	19981	31464	31718							0.10696515871200063
RFLDQWWHKEY	11	Unmodified	_RFLDQWWHKEY_					0	0	0			REV__ENSG00000066777|ENST00000262215|ARFGEF1	REV__ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1502685546875	3	536.596642	1606.7681	-1.0034	-0.00053841	0.59654	0.0003201	-0.40684	-0.00021831	536.5972199934796	23.508	0.15282	23.508	23.381	23.533	0					4	2	2	0	0	0	1.0002	1	6460	6460		2.8433	0.75932	1	1999200	+		42928	16524	31465	31719	41867	41867					-0.01101674842493594
RFLEKRRRERQ	11	Unmodified	_RFLEKRRRERQ_					0	0	0			REV__nc|ENSG00000119509|Q9Y283-2|INVS	REV__nc|ENSG00000119509|Q9Y283-2|INVS	MULTI-MSMS	A375_MHC_IP_R1	1	787.8605346679688	2	787.460939	1572.90732	-0.7116	-0.00056035	0.10918	8.5979E-05	-0.60241	-0.00047437	787.4607780430337	134.18	1.1674	134.18	133.36	134.52	0					81	22	5	0	0	0	0.73891	1	51550	51550		1.1933	0	1	41182000	+		42929	18074	31466	31720	41868	41868					0.14378707565560944
RFLGVGAP	8	Unmodified	_RFLGVGAP_					0	0	0		ENSG00000142959|ENST00000372207|BEST4	ENSG00000142959|ENST00000372207|BEST4	ENSG00000142959|ENST00000372207|BEST4	MULTI-MSMS	A375_MHC_IP_R1	1	409.13995361328125	2	408.739963	815.465373	0.012636	5.1648E-06	0.41581	0.00016996	0.42845	0.00017512	408.7399894209947	43.399	0.40684	43.399	43.146	43.553	0					13	7	2	0	0	0	0.77603	1	15107	15107		9.3474	0	1	1627500			42930	5340	31467	31721	41869	41869					0.05025854279756459
RFLGVGAP	8	Unmodified	_RFLGVGAP_					0	0	0		ENSG00000142959|ENST00000372207|BEST4	ENSG00000142959|ENST00000372207|BEST4	ENSG00000142959|ENST00000372207|BEST4	MULTI-SECPEP	A375_MHC_IP_R2	2	408.9543762207031	2	408.739963	815.465373	0.077645	3.1736E-05	-0.21951	-8.9721E-05	-0.14186	-5.7984E-05	408.7398322772002	42.42	0.35581	43.193	43.014	43.369	0.7724					9	6	2	0	0	0	0.972	1	15729	15729		13.508	7.1538	1	1341600			42931	5340	31467	31721	41870	41870					0.05025854279756459
RFLLRRKF	8	Unmodified	_RFLLRRKF_					0	0	0		nc|ENSG00000095303|P23219-4|PTGS1;nc|ENSG00000095303|P23219-3|PTGS1;nc|ENSG00000095303|P23219-2|PTGS1;ENSG00000095303|ENST00000362012|PTGS1;nc|ENSG00000095303|P23219-6|PTGS1;nc|ENSG00000095303|P23219-5|PTGS1	nc|ENSG00000095303|P23219-4|PTGS1	nc|ENSG00000095303|P23219-4|PTGS1	MSMS	A375_MHC_IP_R1	1	379.2659606933594	3	379.245215	1134.71382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.675	1	57.675	57.175	58.175	0								0	0	0	0.16876	1	20700	20700		3.9444	0	1				42932	2038	31468	31722	41871	41871					0.15184822587275448
RFPEHVREI	9	Unmodified	_RFPEHVREI_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	A375_MHC_IP_R1	1	395.2842712402344	3	394.884123	1181.63054	-0.045677	-1.8037E-05	-0.11799	-4.6594E-05	-0.16367	-6.463E-05	394.88396300193597	28.476	1.3636	28.476	27.786	29.149	0					46	26	2	0	0	0	0.030766	1	8781	8781		74.306	40.862	1	3593200			42933	7927	31469	31723	41872	41872					0.04699041348771971
RFPEHVREI	9	Unmodified	_RFPEHVREI_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	A375_MHC_IP_R2	2	395.2838134765625	3	394.884123	1181.63054	-0.13337	-5.2665E-05	-0.18762	-7.4089E-05	-0.32099	-0.00012675	394.8839533177609	27.539	1.1682	28.218	27.69	28.858	0.67857					54	22	3	0	0	0	0.21002	1	9393	9393		37.251	12.369	1	4137300			42934	7927	31469	31723	41873	41873					0.04699041348771971
RFPKSGGIEL	10	Unmodified	_RFPKSGGIEL_					0	0	0			REV__nc|ENSG00000196503|Q6T311-2|ARL9	REV__nc|ENSG00000196503|Q6T311-2|ARL9	MSMS	A375_MHC_IP_R1	1	368.5942077636719	3	368.545108	1102.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.887	1	34.887	34.387	35.387	0								0	0	0	0.15191	1	11546	11546		14.218	6.2728	1		+		42935	22203	31470	31724	41874	41874					0.06629120742968553
RFPRWRLRTRH	11	Unmodified	_RFPRWRLRTRH_					0	0	0			REV__PLCH1|p.S68F|3|0.15|ENSG00000114805|chr3:155594172-155594172|G/A|missense_variant	REV__PLCH1|p.S68F|3|0.15|ENSG00000114805|chr3:155594172-155594172|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	527.671630859375	3	527.643031	1579.90726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.578	1	72.578	72.078	73.078	0								0	0	0	0.16353	1	26408	26408		0.36667	0.27183	1		+		42936	27797	31471	31725	41875	41875					0.14050752356183693
RFQFSRWVPIW	11	Unmodified	_RFQFSRWVPIW_					0	0	0		ENST00000508276.1_1_4:2933511-2933652:-|nuORF	ENST00000508276.1_1_4:2933511-2933652:-|nuORF	ENST00000508276.1_1_4:2933511-2933652:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.7265319824219	3	507.941973	1520.80409	-0.64357	-0.0003269	2.8633	0.0014544	2.2197	0.0011275	508.2773207572719	32.741	0.20199	32.741	32.634	32.836	0					5	3	2	0	0	0	1.0004	1	10571	10571		2.6312	1.3016	1	892730			42937	12874	31472	31726	41876	41876					0.0645182712503356
RFQRWLRQRQQ	11	Unmodified	_RFQRWLRQRQQ_					0	0	0			REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	535.368408203125	3	534.634313	1600.88111	-0.78505	-0.00041971	0.47836	0.00025575	-0.30668	-0.00016396	534.9689373656851	76.2	0.50824	76.941	76.742	77.25	0.74052					25	9	4	0	0	0	0.73658	1	28941	28941		2.6312	2.6312	1	5935100	+		42938	26499	31473	31727	41877	41877					0.10470438394054327
RFQTQQLL	8	Unmodified	_RFQTQQLL_					0	0	0		ENSG00000010671|ENST00000308731|BTK;nc|ENSG00000010671|Q06187-2|BTK;ENST00000478995.1_1_X:100611030-100611776:-|nuORF	ENSG00000010671|ENST00000308731|BTK	ENSG00000010671|ENST00000308731|BTK	MULTI-SECPEP	A375_MHC_IP_R2	2	517.6928100585938	2	517.293091	1032.57163	-0.91007	-0.00047077	0.01664	8.6076E-06	-0.89343	-0.00046216	517.2928911230051	62.238	0.76223	62.981	62.571	63.333	0.74263					23	14	2	0	0	0	0.76996	1	23617	23617		36.127	0	1	2057400			42939	985	31474	31728	41878	41878					0.05664565054439663
RFQVTHFSWYW	11	Unmodified	_RFQVTHFSWYW_					0	0	0		nc|ENSG00000177595|Q9HB75-4|PIDD1;ENST00000524486.5_1_11:799309-803120:-|nuORF;nc|ENSG00000177595|Q9HB75-2|PIDD1;ENSG00000177595|ENST00000347755|PIDD1	nc|ENSG00000177595|Q9HB75-4|PIDD1	nc|ENSG00000177595|Q9HB75-4|PIDD1	MSMS	A375_MHC_IP_R1	1	519.6607055664062	3	519.585966	1555.73607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.805	1	61.805	61.305	62.305	0								0	0	0	0.1635	1	22299	22299		0.50596	0	1				42940	8091	31475	31729	41879	41879					-0.019570425256233648
RFRADTPPL	9	Unmodified	_RFRADTPPL_					0	0	0			REV__nc|ENSG00000079156|Q9BZF3-2|OSBPL6	REV__nc|ENSG00000079156|Q9BZF3-2|OSBPL6	MULTI-MSMS	A375_MHC_IP_R2	2	358.9132995605469	3	358.201452	1071.58253	-0.55621	-0.00019923	-0.01092	-3.9117E-06	-0.56713	-0.00020315	358.20145230572894	22.862	0.45902	23.492	23.164	23.623	0.63014					16	8	3	0	0	0	0.66474	1	7255	7255		10.151	0.76745	1	8354900	+		42941	16723	31476	31730	41880	41880					0.04959967428703749
RFRDDDYFRNW	11	Unmodified	_RFRDDDYFRNW_					0	0	0		SPOCK1|p.V141Wfs*70|1|0.29|ENSG00000152377|chr5:137112492-137112492|A/-|frameshift_variant;ENSG00000152377|ENST00000394945|SPOCK1	SPOCK1|p.V141Wfs*70|1|0.29|ENSG00000152377|chr5:137112492-137112492|A/-|frameshift_variant	SPOCK1|p.V141Wfs*70|1|0.29|ENSG00000152377|chr5:137112492-137112492|A/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	530.6361694335938	3	530.579651	1588.71712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.99	1	85.726	85.226	86.226	0.73601								0	0	0	0.16338	1	32310	32310		1.1098	0.6038	1				42942	5960	31477	31731	41881	41881					-0.05368623887352442
RFREERWRQYN	11	Unmodified	_RFREERWRQYN_					0	0	0			REV__ENST00000507723.1_1_5:177021070-177022414:+|nuORF	REV__ENST00000507723.1_1_5:177021070-177022414:+|nuORF	MSMS	A375_MHC_IP_R1	1	819.9671020507812	2	820.413654	1638.81276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.49	1	103.49	102.99	103.99	0								0	0	0	0.1636	1	38012	38012		0	0	1		+		42943	21840	31478	31732	41882	41882					0.018901490235521123
RFRFLRRLYKY	11	Unmodified	_RFRFLRRLYKY_					0	0	0			REV__ENSG00000115446|ENST00000357765|UNC50	REV__ENSG00000115446|ENST00000357765|UNC50	MULTI-SECPEP	A375_MHC_IP_R1	1	540.6915893554688	3	539.987805	1616.94158	-0.6402	-0.0003457	2.2865	0.0012347	1.6463	0.00088898	539.9882066822015	99.121	0.76364	99.121	98.607	99.371	0					19	14	2	0	0	0	1.0014	1	36440	36440		0	0	1	1294100	+		42944	17886	31479	31733	41883	41883					0.1577915572445363
RFRKYLRRLFH	11	Unmodified	_RFRKYLRRLFH_					0	0	0		CCR1|p.Q314R|1|0.09|ENSG00000163823|chr3:46203373-46203373|T/C|missense_variant	CCR1|p.Q314R|1|0.09|ENSG00000163823|chr3:46203373-46203373|T/C|missense_variant	CCR1|p.Q314R|1|0.09|ENSG00000163823|chr3:46203373-46203373|T/C|missense_variant	MSMS	A375_MHC_IP_R1	1	796.5933837890625	2	796.47586	1590.93717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.55	1	123.55	123.05	124.05	0								0	0	0	0.16353	1	46185	46185		0.35063	0.043601	1				42945	325	31480	31734	41884	41884					0.1653369130151532
RFRQRWLWRFE	11	Unmodified	_RFRQRWLWRFE_					0	0	0			REV__NADK2|p.I222F|1|0.37|ENSG00000152620|chr5:36217865-36217865|T/A|missense_variant	REV__NADK2|p.I222F|1|0.37|ENSG00000152620|chr5:36217865-36217865|T/A|missense_variant	MSMS	A375_MHC_IP_R1	1	560.6538696289062	3	560.639176	1678.8957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.914	1	88.914	88.414	89.414	0								0	0	0	0.1636	1	32655	32655		0	0	1		+		42946	27080	31481	31735	41885	41885					0.08340510542211632
RFRQRWLWRFE	11	Unmodified	_RFRQRWLWRFE_					0	0	0			REV__NADK2|p.I222F|1|0.37|ENSG00000152620|chr5:36217865-36217865|T/A|missense_variant	REV__NADK2|p.I222F|1|0.37|ENSG00000152620|chr5:36217865-36217865|T/A|missense_variant	MSMS	A375_MHC_IP_R1	1	560.6090698242188	3	560.639176	1678.8957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.085	1	94.085	93.585	94.585	0								0	0	0	0.16358	1	34581	34581		0.08335	0	1		+		42947	27080	31481	31735	41886	41886					0.08340510542211632
RFRQRWLWRFE	11	Unmodified	_RFRQRWLWRFE_					0	0	0			REV__NADK2|p.I222F|1|0.37|ENSG00000152620|chr5:36217865-36217865|T/A|missense_variant	REV__NADK2|p.I222F|1|0.37|ENSG00000152620|chr5:36217865-36217865|T/A|missense_variant	MSMS	A375_MHC_IP_R1	1	560.6506958007812	3	560.639176	1678.8957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105	1	105	104.5	105.5	0								0	0	0	0.1636	1	38550	38550		0	0	1		+		42948	27080	31481	31735	41887	41887					0.08340510542211632
RFRQRWLWRFE	11	Unmodified	_RFRQRWLWRFE_					0	0	0			REV__NADK2|p.I222F|1|0.37|ENSG00000152620|chr5:36217865-36217865|T/A|missense_variant	REV__NADK2|p.I222F|1|0.37|ENSG00000152620|chr5:36217865-36217865|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	560.5037841796875	3	560.639176	1678.8957	-0.596	-0.00033414	0.56146	0.00031478	-0.034533	-1.9361E-05	560.6402458617963	91.376	0.152	91.376	91.249	91.401	0					4	2	2	0	0	0	1.0015	1	33533	33533		0.073264	0.073264	1	945010	+		42949	27080	31481	31735	41888	41888					0.08340510542211632
RFRRDRREWWL	11	Unmodified	_RFRRDRREWWL_					0	0	0			REV__ENST00000530167.1_1_11:118964940-118965138:-|nuORF	REV__ENST00000530167.1_1_11:118964940-118965138:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	559.6328735351562	3	559.306196	1674.89676	-0.61365	-0.00034322	-0.72223	-0.00040395	-1.3359	-0.00074717	559.3062318887162	63.951	0.9664	64.691	64.139	65.106	0.74022					35	18	3	0	0	0	0.73891	1	24289	24289		0.40827	0.40827	1	4266300	+		42950	25835	31482	31736	41889	41889					0.08630724911131438
RFRRDRREWWL	11	Unmodified	_RFRRDRREWWL_					0	0	0			REV__ENST00000530167.1_1_11:118964940-118965138:-|nuORF	REV__ENST00000530167.1_1_11:118964940-118965138:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	559.1725463867188	3	559.306196	1674.89676	-0.61365	-0.00034322	-0.72223	-0.00040395	-1.3359	-0.00074717	559.3062318887162	63.951	0.9664	64.691	64.139	65.106	0.74022					35	18	3	0	0	0	1.0015	1	24269	24269		0.073264	0	1	4266300	+		42951	25835	31482	31736	41890	41890					0.08630724911131438
RFRRLLLF	8	Unmodified	_RFRRLLLF_					0	0	0		ENST00000308527.5_1_15:75940532-75940874:+|nuORF	ENST00000308527.5_1_15:75940532-75940874:+|nuORF	ENST00000308527.5_1_15:75940532-75940874:+|nuORF	MSMS	A375_MHC_IP_R1	1	374.2647705078125	3	374.241582	1119.70292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.064	1	39.064	38.564	39.564	0								0	0	0	0.16876	1	13312	13312		3.9444	0.35734	1				42952	10601	31483	31737	41891	41891					0.1478542021297926
RFRRPWRRRFI	11	Unmodified	_RFRRPWRRRFI_					0	0	0			REV__ENST00000575234.1_1_16:3355499-3356027:+|nuORF	REV__ENST00000575234.1_1_16:3355499-3356027:+|nuORF	MSMS	A375_MHC_IP_R2	2	823.58740234375	2	823.492376	1644.9702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.95	1	123.32	122.82	123.82	0.3766								0	0	0	0.1636	1	47185	47185		0	0	1		+		42953	26305	31484	31738	41892	41892					0.1735131814423312
RFRSTTII	8	Unmodified	_RFRSTTII_					0	0	0		nc|ENSG00000178882|Q6ZTI6-2|RFLNA;ENSG00000178882|ENST00000546355|RFLNA	nc|ENSG00000178882|Q6ZTI6-2|RFLNA	nc|ENSG00000178882|Q6ZTI6-2|RFLNA	MULTI-SECPEP	A375_MHC_IP_R2	2	496.7478942871094	2	497.295633	992.576714	-0.30291	-0.00015063	0.02308	1.1478E-05	-0.27983	-0.00013916	497.2953466927673	145.1	0.66669	145.12	144.94	145.61	0.021423					72	50	2	0	0	0	0.972	1	56748	56748		2.5775	0.27475	1	351120			42954	8184	31485	31739	41893	41893					0.0801286891704649
RFRVGEETVES	11	Unmodified	_RFRVGEETVES_					0	0	0			REV__ENSG00000213339|ENST00000250237|QTRT1	REV__ENSG00000213339|ENST00000250237|QTRT1	MULTI-MSMS	A375_MHC_IP_R2	2	437.63720703125	3	436.889603	1307.64698	-0.73209	-0.00031984	0.37354	0.0001632	-0.35855	-0.00015665	436.8895995942894	25.916	0.50892	26.576	26.296	26.805	0.65992					19	9	3	0	0	0	0.67989	1	8601	8601		9.7643	1.0125	1	7320200	+		42955	22619	31486	31740	41894	41894					0.005460777241978576
RFRWYQVFYPA	11	Unmodified	_RFRWYQVFYPA_					0	0	0		RELN|p.G2110V|1|0.5|ENSG00000189056|chr7:103545318-103545318|C/A|missense_variant	RELN|p.G2110V|1|0.5|ENSG00000189056|chr7:103545318-103545318|C/A|missense_variant	RELN|p.G2110V|1|0.5|ENSG00000189056|chr7:103545318-103545318|C/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	511.99761962890625	3	511.598094	1531.77245	-1.084	-0.00055457	0.5029	0.00025728	-0.58109	-0.00029728	511.5983072702612	20.981	0.40483	21.592	21.312	21.717	0.61029					12	7	2	0	0	0	1.0015	1	6604	6604		0.094841	0	1	2504200			42956	15275	31487	31741	41895	41895					0.02783834371098237
RFSCRFRQEWF	11	Unmodified	_RFSCRFRQEWF_					0	0	0			REV__ENSG00000164082|ENST00000395052|GRM2	REV__ENSG00000164082|ENST00000395052|GRM2	MULTI-MSMS	A375_MHC_IP_R1	1	783.4117431640625	2	781.377694	1560.74084	-0.60282	-0.00047103	-0.18913	-0.00014778	-0.79195	-0.00061881	781.3774943725241	94.876	1.5761	94.876	94.241	95.817	0					113	30	6	0	0	0	0.73284	1	34865	34865		6.1918	3.6934	1	81060000	+		42957	20448	31488	31742	41896	41896					-0.01710481654549767
RFSFFKPIWHE	11	Unmodified	_RFSFFKPIWHE_					0	0	0			REV__nc|ENSG00000185634|Q6S5L8-2|SHC4	REV__nc|ENSG00000185634|Q6S5L8-2|SHC4	MSMS	A375_MHC_IP_R1	1	498.6505432128906	3	498.594461	1492.76155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.573	1	26.573	26.073	27.073	0								0	0	0	0.16313	1	7938	7938		2.4348	0	1		+		42958	27415	31489	31743	41897	41897					0.03488431996811414
RFSFLFFF	8	Unmodified	_RFSFLFFF_					0	0	0		ENST00000463934.1_1_22:39475113-39475338:+|nuORF	ENST00000463934.1_1_22:39475113-39475338:+|nuORF	ENST00000463934.1_1_22:39475113-39475338:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	556.1781005859375	2	555.792195	1109.56984	-0.76498	-0.00042517	0.65874	0.00036612	-0.10624	-5.9048E-05	555.7925437542639	80.141	0.60789	80.885	80.657	81.265	0.74474					21	11	2	0	0	0	0.85715	1	30372	30372		28.487	3.813	1	3226100			42959	12218	31490	31744	41898	41898					0.019435560364627236
RFSNLDCKI	9	Unmodified	_RFSNLDCKI_					0	0	0		ENST00000570109.1_1_15:43426051-43427957:+|nuORF	ENST00000570109.1_1_15:43426051-43427957:+|nuORF	ENST00000570109.1_1_15:43426051-43427957:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	365.9246826171875	3	365.858698	1094.55426	0.078283	2.8641E-05	1.7826	0.00065216	1.8608	0.0006808	365.8592420064117	24.413	0.65714	24.413	24.092	24.749	0					15	12	2	0	0	0	0.74412	1	6952	6952		10.151	7.0783	1	2873700			42960	13600	31491	31745	41899	41899					0.010769014571224034
RFTNNLFYS	9	Unmodified	_RFTNNLFYS_					0	0	0			REV__nc|ENSG00000198739|Q86VH5-2|LRRTM3	REV__nc|ENSG00000198739|Q86VH5-2|LRRTM3	MULTI-SECPEP	A375_MHC_IP_R1	1	387.93682861328125	3	387.861096	1160.56146	0.36547	0.00014175	-1.5248	-0.00059139	-1.1593	-0.00044964	387.85955057420614	42.582	0.30209	42.582	42.336	42.638	0					8	5	2	0	0	0	0.76827	1	14725	14725		7.1017	0.47135	1	754790	+		42961	22407	31492	31746	41900	41900					-0.012400426707927181
RFTVQEWGP	9	Unmodified	_RFTVQEWGP_					0	0	0		nc|ENSG00000258986|Q6ZVK1-2|TMEM179;ENSG00000258986|ENST00000556573|TMEM179	nc|ENSG00000258986|Q6ZVK1-2|TMEM179	nc|ENSG00000258986|Q6ZVK1-2|TMEM179	MULTI-SECPEP	A375_MHC_IP_R2	2	560.6821899414062	2	560.282723	1118.55089	-0.65345	-0.00036612	0.4422	0.00024776	-0.21125	-0.00011836	560.2827259151182	77.423	0.71262	78.166	77.807	78.52	0.74293					16	13	2	0	0	0	0.79429	1	29367	29367		6.7232	6.7232	1	2145100			42962	9925	31493	31747	41901	41901					-0.003640253252342518
RFVRVWWRRRD	11	Unmodified	_RFVRVWWRRRD_					0	0	0		ENST00000477680.5_1_7:4815294-4829561:+|nuORF;ENST00000348624.4_1_7:4815294-4820850:+|nuORF	ENST00000477680.5_1_7:4815294-4829561:+|nuORF	ENST00000477680.5_1_7:4815294-4829561:+|nuORF	MSMS	A375_MHC_IP_R1	1	544.6560668945312	3	544.64292	1630.90693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.27	1	87.27	86.77	87.77	0								0	0	0	0.16351	1	32018	32018		0.45452	0.45452	1				42963	12446	31494	31748	41902	41902					0.11671332636319676
RFVRVWWRRRD	11	Unmodified	_RFVRVWWRRRD_					0	0	0		ENST00000477680.5_1_7:4815294-4829561:+|nuORF;ENST00000348624.4_1_7:4815294-4820850:+|nuORF	ENST00000477680.5_1_7:4815294-4829561:+|nuORF	ENST00000477680.5_1_7:4815294-4829561:+|nuORF	MSMS	A375_MHC_IP_R1	1	544.6336669921875	3	544.64292	1630.90693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.326	1	87.326	86.826	87.826	0								0	0	0	0.16351	1	32039	32039		0.45452	0.37117	1				42964	12446	31494	31748	41903	41903					0.11671332636319676
RFVRVWWRRRD	11	Unmodified	_RFVRVWWRRRD_					0	0	0		ENST00000477680.5_1_7:4815294-4829561:+|nuORF;ENST00000348624.4_1_7:4815294-4820850:+|nuORF	ENST00000477680.5_1_7:4815294-4829561:+|nuORF	ENST00000477680.5_1_7:4815294-4829561:+|nuORF	MSMS	A375_MHC_IP_R1	1	544.6552734375	3	544.64292	1630.90693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.381	1	87.381	86.881	87.881	0								0	0	0	0.16334	1	32060	32060		1.3296	1.3296	1				42965	12446	31494	31748	41904	41904					0.11671332636319676
RFVRVWWRRRD	11	Unmodified	_RFVRVWWRRRD_					0	0	0		ENST00000477680.5_1_7:4815294-4829561:+|nuORF;ENST00000348624.4_1_7:4815294-4820850:+|nuORF	ENST00000477680.5_1_7:4815294-4829561:+|nuORF	ENST00000477680.5_1_7:4815294-4829561:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	544.1834106445312	3	544.64292	1630.90693	-0.65644	-0.00035753	-1.111	-0.00060511	-1.7675	-0.00096264	544.6421185664422	68.606	0.35613	68.606	68.412	68.769	0					11	6	2	0	0	0	1.0015	1	24899	24899		0.40827	0.31342	1	1149100			42966	12446	31494	31748	41905	41905					0.11671332636319676
RFWKLILLTWL	11	Unmodified	_RFWKLILLTWL_					0	0	0		ENST00000465952.5_1_13:31205167-31205455:+|nuORF	ENST00000465952.5_1_13:31205167-31205455:+|nuORF	ENST00000465952.5_1_13:31205167-31205455:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	497.70916748046875	3	496.974502	1487.90168	-0.29692	-0.00014756	0.30879	0.00015346	0.01187	5.8992E-06	496.9745655821226	138.36	1.8126	138.44	138.17	139.98	0.083969					85	35	5	0	0	0	0.73881	1	54263	54263		0.50596	0.41111	1	16063000			42967	12253	31495	31749	41906	41906					0.17724216001192872
RFWWRRRKKIM	11	Unmodified	_RFWWRRRKKIM_					0	0	0			REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF	REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF	MSMS	A375_MHC_IP_R1	1	554.7054443359375	3	554.992784	1661.95652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.496	1	97.496	96.996	97.996	0								0	0	0	0.1636	1	35819	35819		0	0	1		+		42968	23066	31496	31750	41907	41907					0.1520232432078501
RFWWRRRKKIM	11	Unmodified	_RFWWRRRKKIM_					0	0	0			REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF	REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF	MSMS	A375_MHC_IP_R1	1	555.0601196289062	3	554.992784	1661.95652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.17	1	138.17	137.67	138.67	0								0	0	0	0.1636	1	53157	53157		0	0	1		+		42969	23066	31496	31750	41908	41908					0.1520232432078501
RFYGRDYEY	9	Unmodified	_RFYGRDYEY_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	A375_MHC_IP_R1	1	635.1881103515625	2	634.78837	1267.56219	-0.71096	-0.00045131	-0.032173	-2.0423E-05	-0.74314	-0.00047173	634.7884514047502	33.266	3.6545	33.266	32.989	36.644	0					164	71	6	0	0	0	0.0042961	3	10797	10797;11044;11320		136.39	108.76	1	793000000			42970	9625	31497	31751	41909;41910;41911	41909					-0.06089248021748972
RFYGRDYEY	9	Unmodified	_RFYGRDYEY_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	A375_MHC_IP_R1	1	423.25616455078125	3	423.528005	1267.56219	-0.10821	-4.5828E-05	-0.16566	-7.016E-05	-0.27386	-0.00011599	423.52803657380974	33.285	3.7558	33.285	32.989	36.745	0					174	73	6	0	0	0	0.02559	3	10847	10847;11042;11552		63.227	52.329	1	926030000			42971	9625	31497	31751	41912;41913;41914	41912					-0.06089248021748972
RFYGRDYEY	9	Unmodified	_RFYGRDYEY_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	A375_MHC_IP_R2	2	423.9277648925781	3	423.528005	1267.56219	-0.20456	-8.6638E-05	-0.21375	-9.0531E-05	-0.41832	-0.00017717	423.5280269777195	32.536	4.3144	33.273	32.96	37.274	0.73692					195	84	6	0	0	0	0.033557	3	11531	11531;11772;12298		57.249	39.386	1	930310000			42972	9625	31497	31751	41915;41916;41917	41915					-0.06089248021748972
RFYGRDYEY	9	Unmodified	_RFYGRDYEY_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	A375_MHC_IP_R2	2	635.1876831054688	2	634.78837	1267.56219	-0.84824	-0.00053845	-0.057521	-3.6513E-05	-0.90576	-0.00057497	634.7884187334919	32.554	3.6519	33.291	32.96	36.612	0.73692					175	71	6	0	0	0	0.0042961	4	11532	11532;11581;11774;12026		136.39	101.46	1	716940000			42973	9625	31497	31751	41918;41919;41920;41921	41918					-0.06089248021748972
RFYLEKLK	8	Unmodified	_RFYLEKLK_					0	0	0		tr|U7T3P7|U7T3P7_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00486PE=4SV=1	tr|U7T3P7|U7T3P7_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00486PE=4SV=1	tr|U7T3P7|U7T3P7_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00486PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	366.9645080566406	3	366.221965	1095.64407	0.20814	7.6226E-05	0.1609	5.8924E-05	0.36904	0.00013515	366.2218921144423	33.323	0.40637	33.323	33.09	33.496	0					16	7	3	0	0	0	0.95424	1	10918	10918		13.906	0	1	2893400			42974	29982	31498	31752	41922	41922					0.1000689912798407
RFYRLRSNPI	10	Unmodified	_RFYRLRSNPI_					0	0	0			REV__TRDMT1|p.L165R|1|0.51|ENSG00000107614|chr10:17159195-17159195|A/C|missense_variant	REV__TRDMT1|p.L165R|1|0.51|ENSG00000107614|chr10:17159195-17159195|A/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	661.7776489257812	2	661.37802	1320.74149	-0.41478	-0.00027433	-0.9177	-0.00060695	-1.3325	-0.00088127	661.3774202357258	56.117	0.45553	56.117	55.891	56.347	0					14	8	2	0	0	0	0.79457	1	20119	20119		26.268	7.895	1	3451400	+		42975	28896	31499	31753	41923	41923					0.09394681056846821
RFYWRRRRKV	10	Unmodified	_RFYWRRRRKV_					0	0	0			REV__ENST00000181839.8_1_7:39989715-39990237:+|nuORF	REV__ENST00000181839.8_1_7:39989715-39990237:+|nuORF	MSMS	A375_MHC_IP_R1	1	761.78271484375	2	761.952553	1521.89055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.11	1	119.11	118.61	119.61	0								0	0	0	0.15629	1	43968	43968		0.40072	0.050084	1		+		42976	23015	31500	31754	41924	41924					0.150482514702162
RFYYVHSKFH	10	Unmodified	_RFYYVHSKFH_					0	0	0			REV__ENST00000594346.1_1_13:99098688-99099072:+|nuORF	REV__ENST00000594346.1_1_13:99098688-99099072:+|nuORF	MSMS	A375_MHC_IP_R2	2	692.3101806640625	2	692.351471	1382.68839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.691	1	81.436	80.936	81.936	0.74474								0	0	0	0.15423	1	30637	30637		7.1017	1.3699	1		+		42977	19815	31501	31755	41925	41925					0.012353032741657444
RGAARPEL	8	Unmodified	_RGAARPEL_					0	0	0		ENST00000512335.5_1_5:1633012-1634075:-|nuORF	ENST00000512335.5_1_5:1633012-1634075:-|nuORF	ENST00000512335.5_1_5:1633012-1634075:-|nuORF	MSMS	A375_MHC_IP_R2	2	435.165771484375	2	435.251226	868.487899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.854	1	76.595	76.095	77.095	0.74052								0	0	0	0.16876	1	28795	28795		14.582	0	1				42978	12919	31502	31756	41926	41926					0.048394536773685104
RGAHHYTGLLK	11	Unmodified	_RGAHHYTGLLK_					0	0	0		HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant;HTT|p.S2672Rfs*25|1|0.31|ENSG00000197386|chr4:3228913-3228913|T/-|frameshift_variant;ENSG00000197386|ENST00000355072|HTT;ENST00000510626.5_1_4:3131970-3189635:+|nuORF	HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant	HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	417.60919189453125	3	418.235156	1251.68364	0.063433	2.653E-05	-0.33401	-0.0001397	-0.27058	-0.00011317	418.23491614532566	36.312	0.40567	36.312	36.084	36.489	0					11	7	2	0	0	0	0.99945	1	12108	12108		4.1166	2.5243	1	1036300			42979	9151	31503	31757	41927	41927					0.06786419131412913
RGAKLYETKAV	11	Unmodified	_RGAKLYETKAV_					0	0	0		FNDC7|p.E399K|1|0.56|ENSG00000143107|chr1:108727891-108727891|G/A|missense_variant	FNDC7|p.E399K|1|0.56|ENSG00000143107|chr1:108727891-108727891|G/A|missense_variant	FNDC7|p.E399K|1|0.56|ENSG00000143107|chr1:108727891-108727891|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	412.9747314453125	3	412.575067	1234.70337	-0.24963	-0.00010299	-0.54969	-0.00022679	-0.79932	-0.00032978	412.5748551892935	18.905	0.20984	19.508	19.423	19.633	0.60308					6	5	2	0	0	0	0.73715	1	5715	5715		2.084	0.49169	1	40931000			42980	14012	31504	31758	41928	41928					0.09540750351493443
RGALSPVL	8	Unmodified	_RGALSPVL_					0	0	0		nc|ENSG00000174521|Q8N6N2-2|TTC9B;ENST00000593586.1_1_19:40723712-40724288:-|nuORF;TTC9B|p.Y182Sfs*32|1|0.32|ENSG00000174521|chr19:40217252-40217252|T/-|frameshift_variant;ENSG00000174521|ENST00000311308|TTC9B	nc|ENSG00000174521|Q8N6N2-2|TTC9B	nc|ENSG00000174521|Q8N6N2-2|TTC9B	MSMS	A375_MHC_IP_R2	2	406.6433410644531	2	406.75307	811.491587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.011	1	56.762	56.262	57.262	0.75015								0	0	0	0.16876	1	21166	21166		14.838	0	1				42981	7889	31505	31759	41929	41929					0.07830123451230975
RGALTVGV	8	Unmodified	_RGALTVGV_					0	0	0		ENSG00000131459|ENST00000253778|GFPT2	ENSG00000131459|ENST00000253778|GFPT2	ENSG00000131459|ENST00000253778|GFPT2	MULTI-SECPEP	A375_MHC_IP_R2	2	771.7926025390625	1	772.467564	771.460287	-0.74807	-0.00057786	1.1738	0.00090669	0.42569	0.00032883	772.4684498794223	144.97	0.14903	144.99	144.89	145.04	0.021408					5	3	2	0	0	0	0.972	1	56622	56622		2.0598	0	1	1214000			42982	4330	31506	31760	41930	41930					0.06541550417148301
RGARKIVLW	9	Unmodified	_RGARKIVLW_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3;nc|ENSG00000162496|O75911-2|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MULTI-MSMS	A375_MHC_IP_R1	1	367.30145263671875	3	366.901337	1097.68218	0.25428	9.3295E-05	-0.092577	-3.3967E-05	0.1617	5.9329E-05	366.9012613158815	40.787	0.55486	40.787	40.559	41.114	0					23	10	3	0	0	0	0.29123	1	14046	14046		31.268	10.854	1	10042000			42983	6540	31507	31761	41931	41931					0.1372482983331338
RGARKIVLW	9	Unmodified	_RGARKIVLW_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3;nc|ENSG00000162496|O75911-2|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MULTI-MSMS	A375_MHC_IP_R2	2	367.3013000488281	3	366.901337	1097.68218	0.096063	3.5246E-05	0.1472	5.4006E-05	0.24326	8.9252E-05	366.90136280762374	39.658	0.60865	40.432	40.169	40.777	0.77451					26	11	3	0	0	0	0.29123	1	14641	14641		31.268	15.119	1	11396000			42984	6540	31507	31761	41932	41932					0.1372482983331338
RGATRPPP	8	Unmodified	_RGATRPPP_					0	0	0			REV__ENST00000340954.11_1_20:47795674-47804881:-|nuORF	REV__ENST00000340954.11_1_20:47795674-47804881:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	426.6455383300781	2	426.245944	850.477334	-0.023526	-1.0028E-05	-0.22747	-9.6959E-05	-0.251	-0.00010699	426.2458092212477	116.52	1.0684	117.18	116.92	117.99	0.65961					38	20	2	0	0	0	0.7773	1	44047	44047		4.756	2.1785	1	17847000	+		42985	23725	31508	31762	41933	41933					0.0461147102294035
RGCCGGCC	8	Unmodified	_RGCCGGCC_					0	0	0		nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000285843|P0DSO2|SCYGR9	nc|ENSG00000285843|P0DSO2|SCYGR9	MULTI-MSMS	A375_MHC_IP_R1	1	758.6211547851562	1	758.220081	757.212805	-0.32982	-0.00025008	-1.3752	-0.0010427	-1.705	-0.0012928	758.2215031516351	45.769	2.9958	45.769	44.267	47.263	0					112	58	3	0	0	0	0.77861	1	15886	15886		0	0	1	1736600			42986	14947	31509	31763	41934	41934					-0.1755130938063303
RGCCGGCC	8	Unmodified	_RGCCGGCC_					0	0	0		nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000285843|P0DSO2|SCYGR9	nc|ENSG00000285843|P0DSO2|SCYGR9	MULTI-MSMS	A375_MHC_IP_R1	1	758.340087890625	1	758.220081	757.212805	-0.85422	-0.00064769	-0.8023	-0.00060832	-1.6565	-0.001256	758.221646262931	141.41	3.7524	141.41	140.08	143.84	0					167	73	3	0	0	0	0.77861	1	53886	53886		0	0	1	1533400			42987	14947	31509	31763	41935	41935					-0.1755130938063303
RGCCGGCC	8	Unmodified	_RGCCGGCC_					0	0	0		nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000285843|P0DSO2|SCYGR9	nc|ENSG00000285843|P0DSO2|SCYGR9	MULTI-SECPEP	A375_MHC_IP_R1	1	757.7262573242188	1	758.220081	757.212805	-0.46512	-0.00035267	-0.64537	-0.00048933	-1.1105	-0.000842	758.2216888157437	42.237	4.1156	42.237	40.151	44.267	0					148	80	3	0	0	0	0.972	1	14369	14369		0	0	1	2093700			42988	14947	31509	31763	41936	41936					-0.1755130938063303
RGCCGGCC	8	Unmodified	_RGCCGGCC_					0	0	0		nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000285843|P0DSO2|SCYGR9	nc|ENSG00000285843|P0DSO2|SCYGR9	MULTI-SECPEP	A375_MHC_IP_R1	1	758.7767333984375	1	758.220081	757.212805	-0.45484	-0.00034487	0.68106	0.00051639	0.22621	0.00017152	758.2215330981298	77.048	3.1445	77.048	75.966	79.111	0					78	61	2	0	0	0	0.972	1	27882	27882		0.79363	0.79363	1	1940400			42989	14947	31509	31763	41937	41937					-0.1755130938063303
RGCCGGCC	8	Unmodified	_RGCCGGCC_					0	0	0		nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000285843|P0DSO2|SCYGR9	nc|ENSG00000285843|P0DSO2|SCYGR9	MULTI-MSMS	A375_MHC_IP_R2	2	758.1361694335938	1	758.220081	757.212805	-0.70592	-0.00053524	-0.91834	-0.00069631	-1.6243	-0.0012315	758.2217103345255	141.42	3.8678	141.46	140.04	143.91	0.04216					150	75	3	0	0	0	0.77861	1	54991	54991		0	0	1	1630000			42990	14947	31509	31763	41938	41938					-0.1755130938063303
RGCCGGCC	8	Unmodified	_RGCCGGCC_					0	0	0		nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000285843|P0DSO2|SCYGR9	nc|ENSG00000285843|P0DSO2|SCYGR9	MULTI-SECPEP	A375_MHC_IP_R2	2	758.7318725585938	1	758.220081	757.212805	-0.82617	-0.00062641	0.87113	0.00066051	0.044965	3.4093E-05	758.2216784440009	44.035	2.6881	44.804	43.062	45.75	0.7691					77	52	2	0	0	0	0.972	1	16441	16441		0.69038	0	1	1451300			42991	14947	31509	31763	41939	41939					-0.1755130938063303
RGCCGGCC	8	Unmodified	_RGCCGGCC_					0	0	0		nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000285843|P0DSO2|SCYGR9	nc|ENSG00000285843|P0DSO2|SCYGR9	MULTI-SECPEP	A375_MHC_IP_R2	2	758.8313598632812	1	758.220081	757.212805	-0.83823	-0.00063556	1.4736	0.0011174	0.63542	0.00048179	758.2222799129169	108.92	1.8345	109.66	108.55	110.38	0.74684					52	35	2	0	0	0	0.972	1	41151	41151		0.69038	0.69038	1	1219800			42992	14947	31509	31763	41940	41940					-0.1755130938063303
RGCCGGCC	8	Unmodified	_RGCCGGCC_					0	0	0		nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000285843|P0DSO2|SCYGR9	nc|ENSG00000285843|P0DSO2|SCYGR9	MULTI-SECPEP	A375_MHC_IP_R2	2	758.442138671875	1	758.220081	757.212805	-0.90464	-0.00068592	1.3186	0.00099982	0.414	0.0003139	758.2218519977957	76.23	2.5373	76.971	75.267	77.805	0.74052					79	49	2	0	0	0	0.972	1	28825	28825		0.79363	0.79363	1	1753400			42993	14947	31509	31763	41941	41941					-0.1755130938063303
RGCGSCGC	8	Unmodified	_RGCGSCGC_					0	0	0		KRTAP5-4|p.G129R|3|0.34|ENSG00000241598|chr11:1621709-1621709|C/T|missense_variant	KRTAP5-4|p.G129R|3|0.34|ENSG00000241598|chr11:1621709-1621709|C/T|missense_variant	KRTAP5-4|p.G129R|3|0.34|ENSG00000241598|chr11:1621709-1621709|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	371.6429443359375	2	371.625101	741.235649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.025	1	26.025	25.525	26.525	0								0	0	0	0.16876	1	7691	7691		0	0	1				42994	14241	31510	31764	41942	41942					-0.1453196699151249
RGCKCAGP	8	Unmodified	_RGCKCAGP_					0	0	0			REV__ENST00000394430.5_1_11:64511281-64511401:-|nuORF	REV__ENST00000394430.5_1_11:64511281-64511401:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	791.7608642578125	1	791.365089	790.357813	-0.79114	-0.00062608	-0.50085	-0.00039636	-1.292	-0.0010224	791.3616447930169	144.52	0.13986	144.52	144.45	144.59	0					12	4	4	0	0	0	0.972	1	55428	55428		0	0	1	1565100	+		42995	24307	31511	31765	41943	41943					-0.045751819176416575
RGCSAAIY	8	Unmodified	_RGCSAAIY_					0	0	0		ENST00000527171.5_1_11:6947755-6947803:+|nuORF	ENST00000527171.5_1_11:6947755-6947803:+|nuORF	ENST00000527171.5_1_11:6947755-6947803:+|nuORF	MSMS	A375_MHC_IP_R2	2	421.1033935546875	2	420.705263	839.395972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.472	1	27.132	26.632	27.632	0.65992								0	0	0	0.16876	1	8947	8947		12.532	0	1				42996	13092	31512	31766	41944	41944					-0.030149727313414587
RGCTVTCKTW	10	Unmodified	_RGCTVTCKTW_					0	0	0			REV__ENSG00000136378|ENST00000388820|ADAMTS7	REV__ENSG00000136378|ENST00000388820|ADAMTS7	MSMS	A375_MHC_IP_R1	1	577.6949462890625	2	577.775893	1153.53723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.291	1	34.291	33.791	34.791	0								0	0	0	0.15158	1	11288	11288		14.838	2.3067	1		+		42997	18932	31513	31767	41945	41945					-0.03339342420349567
RGCTVTCKTW	10	Unmodified	_RGCTVTCKTW_					0	0	0			REV__ENSG00000136378|ENST00000388820|ADAMTS7	REV__ENSG00000136378|ENST00000388820|ADAMTS7	MULTI-MSMS	A375_MHC_IP_R2	2	577.694580078125	2	577.775893	1153.53723	-0.70347	-0.00040645	-3.3835	-0.0019549	-4.087	-0.0023614	577.7741157125964	33.637	0.4037	34.389	34.196	34.6	0.75225					11	7	2	0	0	0	0.6806	1	11985	11985		14.838	0.93222	1	2153500	+		42998	18932	31513	31767	41946	41946					-0.03339342420349567
RGDRGSNFTY	10	Unmodified	_RGDRGSNFTY_					0	0	0			REV__ENSG00000110881|ENST00000447966|ASIC1	REV__ENSG00000110881|ENST00000447966|ASIC1	MSMS	A375_MHC_IP_R1	1	586.6925659179688	2	586.775793	1171.53703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.092	1	65.092	64.592	65.592	0								0	0	0	0.14601	1	23561	23561		25.399	2.2509	1		+		42999	17645	31514	31768	41947	41947					-0.041873028243117005
RGDSRSPSHK	10	Unmodified	_RGDSRSPSHK_					0	0	0		ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	MSMS	A375_MHC_IP_R2	2	563.7039794921875	2	563.789235	1125.56392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.774	1	64.514	64.014	65.014	0.74022								0	0	0	0.15038	1	24183	24183		17.113	1.2657	1				43000	7245	31515	31769	41948	41948					0.006158057868560718
RGEDKLFY	8	Unmodified	_RGEDKLFY_					0	0	0			REV__ENSG00000198883|ENST00000535214|PNMA5	REV__ENSG00000198883|ENST00000535214|PNMA5	MULTI-MSMS	A375_MHC_IP_R1	1	515.6837768554688	2	514.263999	1026.51345	-0.6487	-0.0003336	-1.4756	-0.00075887	-2.1243	-0.0010925	514.2646924154533	80.837	0.45786	80.837	80.642	81.1	0					27	8	4	0	0	0	0.76683	1	29589	29589		15.768	0	1	4850500	+		43001	22438	31516	31770	41949	41949					0.0012488340912568674
RGEFFRRGLVQ	11	Unmodified	_RGEFFRRGLVQ_					0	0	0			REV__TP73|p.S289F|1|0.39|ENSG00000078900|chr1:3727651-3727651|C/T|missense_variant	REV__TP73|p.S289F|1|0.39|ENSG00000078900|chr1:3727651-3727651|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	683.2796630859375	2	682.880927	1363.7473	-0.63	-0.00043021	-0.834	-0.00056952	-1.464	-0.00099974	682.8801848700822	74.1	0.65878	74.1	73.792	74.451	0					32	12	4	0	0	0	0.69831	1	26965	26965		40.239	10.399	1	11156000	+		43002	28153	31517	31771	41950	41950					0.07997779568518126
RGEFFRRGLVQ	11	Unmodified	_RGEFFRRGLVQ_					0	0	0			REV__TP73|p.S289F|1|0.39|ENSG00000078900|chr1:3727651-3727651|C/T|missense_variant	REV__TP73|p.S289F|1|0.39|ENSG00000078900|chr1:3727651-3727651|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	682.880927	1363.7473	-0.59674	-0.0004075	-0.90506	-0.00061805	-1.5018	-0.0010256	682.8802558143915	73.483	0.61218	74.218	73.938	74.551	0.73541	0.058957	-4.4136E-05	NaN	40.239	30	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13117000	+		43003	28153	31517	31771							0.07997779568518126
RGEGLRLLL	9	Unmodified	_RGEGLRLLL_					0	0	0		ENST00000468472.1_1_3:52847439-52852236:-|nuORF;nc|ENSG00000055955|Q14624-3|ITIH4;nc|ENSG00000055955|Q14624-2|ITIH4;ENSG00000055955|ENST00000266041|ITIH4	ENST00000468472.1_1_3:52847439-52852236:-|nuORF	ENST00000468472.1_1_3:52847439-52852236:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	514.2242431640625	2	513.824558	1025.63456	-0.59184	-0.0003041	-0.015213	-7.8171E-06	-0.60705	-0.00031192	513.8244843224638	76.853	0.51058	76.853	76.572	77.083	0					15	9	2	0	0	0	0.56537	1	28030	28030		12.241	0	1	3649300			43004	1274	31518	31772	41951	41951					0.12277130842471706
RGELLDLIKL	10	Unmodified	_RGELLDLIKL_					0	0	0			REV__ENST00000539190.6_1_12:89855074-89919672:-|nuORF	REV__ENST00000539190.6_1_12:89855074-89919672:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	389.9693298339844	3	390.579929	1168.71796	-0.37703	-0.00014726	1.1242	0.0004391	0.7472	0.00029184	390.58058007110424	39.018	0.4088	39.792	39.607	40.016	0.77451					11	7	2	0	0	0	0.91643	1	14418	14418		12.175	2.6308	1	1013200	+		43005	19149	31519	31773	41952	41952					0.1403482249966146
RGERLPAA	8	Unmodified	_RGERLPAA_					0	0	0			REV__ENST00000335007.9_1_12:111180498-111180681:-|nuORF	REV__ENST00000335007.9_1_12:111180498-111180681:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	435.2825927734375	2	435.251226	868.487899	-0.041176	-1.7922E-05	0.2438	0.00010612	0.20263	8.8194E-05	435.2512280958006	104.22	6.8161	104.22	102.61	109.42	0					311	133	3	0	0	0	0.77741	1	39700	39700		4.3292	0	1	16984000	+		43006	23664	31520	31774	41953	41953					0.048394536773685104
RGERPALA	8	Unmodified	_RGERPALA_					0	0	0			REV__ENST00000527236.2_8:145437923-145438016:+|nuORF	REV__ENST00000527236.2_8:145437923-145438016:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	435.6510925292969	2	435.251226	868.487899	-0.10926	-4.7556E-05	-0.66972	-0.0002915	-0.77899	-0.00033905	435.25114798276735	102.16	1.7719	102.16	101.24	103.01	0					69	34	3	0	0	0	0.77839	1	37440	37440		0.79363	0	1	3420400	+		43007	25783	31521	31775	41954	41954					0.04839453677357142
RGERSLVP	8	Unmodified	_RGERSLVP_					0	0	0			REV__ENSG00000122386|ENST00000219091|ZNF205	REV__ENSG00000122386|ENST00000219091|ZNF205	MULTI-MSMS	A375_MHC_IP_R1	1	457.664306640625	2	457.264333	912.514114	-0.13296	-6.0799E-05	0.27225	0.00012449	0.13929	6.3693E-05	457.2643529469833	104.84	4.938	104.84	103.12	108.05	0					218	96	4	0	0	0	0.77741	1	38816	38816		4.3292	0	1	9867800	+		43008	18202	31522	31776	41955	41955					0.05435722848858404
RGFFRSVFY	9	Unmodified	_RGFFRSVFY_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	A375_MHC_IP_R1	1	393.9417724609375	3	393.541697	1177.60326	0.014162	5.5733E-06	0.10421	4.101E-05	0.11837	4.6584E-05	393.54178462010833	76.096	0.45421	76.096	75.865	76.319	0					13	8	2	0	0	0	0.67787	1	27782	27782		8.9762	4.7867	1	1397000			43009	1197	31523	31777	41956	41956					0.021565578083709624
RGFFRSVFY	9	Unmodified	_RGFFRSVFY_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MATCH	A375_MHC_IP_R2	2		3	393.541697	1177.60326	-0.22645	-8.9119E-05	0.050184	1.9749E-05	-0.17627	-6.9369E-05	393.54169803085995	75.076	0.50481	75.814	75.57	76.075	0.73751	-0.1412	-4.1884E-05	NaN	8.9762	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1208200			43010	1197	31523	31777							0.021565578083709624
RGFGIGEL	8	Unmodified	_RGFGIGEL_					0	0	0		nc|ENSG00000119772|Q9Y6K1-2|DNMT3A;DNMT3A|p.W860Lfs*4|1|0.64|ENSG00000119772|chr2:25235725-25235726|-/A|frameshift_variant;ENSG00000119772|ENST00000321117|DNMT3A	nc|ENSG00000119772|Q9Y6K1-2|DNMT3A	nc|ENSG00000119772|Q9Y6K1-2|DNMT3A	MULTI-SECPEP	A375_MHC_IP_R1	1	425.134765625	2	424.734877	847.455202	0.024438	1.038E-05	0.31382	0.00013329	0.33826	0.00014367	424.73491395777427	72.499	0.40539	72.499	72.271	72.676	0					13	7	2	0	0	0	0.90775	1	26399	26399		20.454	5.8719	1	2703600			43011	779	31524	31778	41957	41957					0.025372465545160594
RGFGIGEL	8	Unmodified	_RGFGIGEL_					0	0	0		nc|ENSG00000119772|Q9Y6K1-2|DNMT3A;DNMT3A|p.W860Lfs*4|1|0.64|ENSG00000119772|chr2:25235725-25235726|-/A|frameshift_variant;ENSG00000119772|ENST00000321117|DNMT3A	nc|ENSG00000119772|Q9Y6K1-2|DNMT3A	nc|ENSG00000119772|Q9Y6K1-2|DNMT3A	MULTI-MSMS	A375_MHC_IP_R2	2	425.135009765625	2	424.734877	847.455202	-0.46895	-0.00019918	0.40817	0.00017336	-0.060786	-2.5818E-05	424.7349797287941	71.588	0.4547	72.322	72.061	72.516	0.73421					15	8	2	0	0	0	0.72008	1	27162	27162		28.487	3.813	1	2810600			43012	779	31524	31778	41958	41958					0.025372465545160594
RGFLIASF	8	Unmodified	_RGFLIASF_					0	0	0		ENSG00000110719|ENST00000265686|TCIRG1	ENSG00000110719|ENST00000265686|TCIRG1	ENSG00000110719|ENST00000265686|TCIRG1	MULTI-SECPEP	A375_MHC_IP_R1	1	456.160888671875	2	455.760895	909.507237	-0.21955	-0.00010006	0.17998	8.2026E-05	-0.039579	-1.8038E-05	455.7609817220117	100.56	1.5698	100.56	100.18	101.75	0					67	30	4	0	0	0	0.40488	1	36908	36908		67.344	13.768	1	13330000			43013	2944	31525	31779	41959	41959					0.04886409968275984
RGFLIASF	8	Unmodified	_RGFLIASF_					0	0	0		ENSG00000110719|ENST00000265686|TCIRG1	ENSG00000110719|ENST00000265686|TCIRG1	ENSG00000110719|ENST00000265686|TCIRG1	MULTI-SECPEP	A375_MHC_IP_R2	2	456.16064453125	2	455.760895	909.507237	0.0078427	3.5744E-06	-0.45266	-0.00020631	-0.44482	-0.00020273	455.76067068246897	99.5	0.96681	100.26	99.861	100.83	0.76278					40	18	3	0	0	0	0.40488	1	37703	37703		67.344	6.9543	1	12170000			43014	2944	31525	31779	41960	41960					0.04886409968275984
RGFPSARV	8	Unmodified	_RGFPSARV_					0	0	0			REV__ENST00000263083.10_1_17:1944800-1946395:+|nuORF	REV__ENST00000263083.10_1_17:1944800-1946395:+|nuORF	MSMS	A375_MHC_IP_R1	1	445.2984924316406	2	445.253769	888.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.99	1	27.99	27.49	28.49	0								0	0	0	0.16876	1	8570	8570		7.9102	2.6795	1		+		43015	23218	31526	31780	41961	41961					0.044277575399860325
RGFQSQVKKW	10	Unmodified	_RGFQSQVKKW_					0	0	0		ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-MSMS	A375_MHC_IP_R1	1	421.92059326171875	3	421.903406	1262.68839	-0.085789	-3.6195E-05	-0.010192	-4.3E-06	-0.095981	-4.0495E-05	421.90330337919914	24.622	0.45564	24.622	24.447	24.903	0					20	8	3	0	0	0	0.055666	3	7041	7041;7091;7123		74.306	58.768	1	13205000			43016	4386	31527	31781	41962;41963;41964	41962					0.06755303274189828
RGFQSQVKKW	10	Unmodified	_RGFQSQVKKW_					0	0	0		ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-MSMS	A375_MHC_IP_R2	2	422.63751220703125	3	421.903406	1262.68839	-0.37314	-0.00015743	0.41169	0.00017369	0.038551	1.6265E-05	421.90346551822057	23.915	0.61126	24.545	24.333	24.944	0.63014					22	11	3	0	0	0	0.012187	1	7793	7793		90.964	74.69	1	10849000			43017	4386	31527	31781	41965	41965					0.06755303274189828
RGFRARQR	8	Unmodified	_RGFRARQR_					0	0	0		nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;ENST00000563542.5_1_15:72185266-72338904:-|nuORF	nc|ENSG00000066933|B2RTY4-5|MYO9A	nc|ENSG00000066933|B2RTY4-5|MYO9A	MSMS	A375_MHC_IP_R2	2	523.7035522460938	2	523.807565	1045.60058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.73	1	120.27	119.77	120.77	0.5321								0	0	0	0.16876	1	45628	45628		4.756	0.42677	1				43018	1423	31528	31782	41966	41966					0.07960147194057754
RGFSLEEL	8	Unmodified	_RGFSLEEL_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000563749.1_1_16:89627605-89627911:+|nuORF;ENST00000440687.1_1_20:44728270-44728609:+|nuORF;ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-SECPEP	A375_MHC_IP_R1	1	476.1504211425781	2	475.750724	949.486896	-0.35523	-0.000169	0.14197	6.7543E-05	-0.21326	-0.00010146	475.75075602750155	78.93	0.65904	78.93	78.606	79.265	0					25	12	3	0	0	0	0.64713	1	28780	28780		43.858	2.0187	1	7390300			43019	7191	31529	31783	41967	41967					0.010131945178045498
RGFTPLIW	8	Unmodified	_RGFTPLIW_					0	0	0		nc|ENSG00000064490|O14593-2|RFXANK;ENST00000541873.6_1_19:19304755-19309594:+|nuORF;nc|ENSG00000064490|O14593-3|RFXANK;ENSG00000064490|ENST00000303088|RFXANK	nc|ENSG00000064490|O14593-2|RFXANK	nc|ENSG00000064490|O14593-2|RFXANK	MULTI-MSMS	A375_MHC_IP_R1	1	496.1839904785156	2	495.281995	988.549437	-0.15027	-7.4427E-05	0.014295	7.0799E-06	-0.13598	-6.7347E-05	495.2819087149813	107.13	0.71566	107.13	106.73	107.44	0					28	13	3	0	0	0	0.73111	1	39284	39284		25.399	0	1	6491800			43020	1351	31530	31784	41968	41968					0.05470385376668219
RGFTPLIW	8	Unmodified	_RGFTPLIW_					0	0	0		nc|ENSG00000064490|O14593-2|RFXANK;ENST00000541873.6_1_19:19304755-19309594:+|nuORF;nc|ENSG00000064490|O14593-3|RFXANK;ENSG00000064490|ENST00000303088|RFXANK	nc|ENSG00000064490|O14593-2|RFXANK	nc|ENSG00000064490|O14593-2|RFXANK	MULTI-MSMS	A375_MHC_IP_R2	2	495.6817626953125	2	495.281995	988.549437	-0.49402	-0.00024468	-0.69661	-0.00034502	-1.1906	-0.0005897	495.28157357138525	106.07	0.71291	106.83	106.58	107.29	0.75977					27	13	3	0	0	0	0.31691	1	40083	40083		57.471	0	1	5666100			43021	1351	31530	31784	41969	41969					0.05470385376668219
RGFVFSLV	8	Unmodified	_RGFVFSLV_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	A375_MHC_IP_R2	2	463.1683654785156	2	462.76872	923.522887	-0.57088	-0.00026418	-0.046547	-2.1541E-05	-0.61742	-0.00028572	462.76865578676825	107.61	0.51047	108.37	108.1	108.61	0.75436					15	9	2	0	0	0	0.86263	1	40650	40650		34.102	5.9292	1	1750800			43022	4224	31531	31785	41970	41970					0.05806696485319662
RGFYSVETF	9	Unmodified	_RGFYSVETF_					0	0	0		ENSG00000149923|ENST00000279387|PPP4C;ENST00000567040.5_1_16:30087698-30094972:+|nuORF	ENSG00000149923|ENST00000279387|PPP4C	ENSG00000149923|ENST00000279387|PPP4C	MULTI-MSMS	A375_MHC_IP_R1	1	553.1890869140625	2	553.269281	1104.52401	-0.43959	-0.00024321	1.8195	0.0010067	1.3799	0.00076348	553.2692177234878	72.603	1.0652	72.603	72.22	73.285	0					103	20	6	0	0	0	0.19747	1	26599	26599		38.176	7.539	1	52738000			43023	5832	31532	31786	41971	41971					-0.024071339364581945
RGGAAAAL	8	Unmodified	_RGGAAAAL_					0	0	0			REV__nc|ENSG00000148343|Q7L4E1-2|MIGA2	REV__nc|ENSG00000148343|Q7L4E1-2|MIGA2	MULTI-SECPEP	A375_MHC_IP_R1	1	686.3084106445312	1	686.394399	685.387122	-0.97849	-0.00067163	-3.1214	-0.0021425	-4.0998	-0.0028141	686.3927382385009	141.75	0.40524	141.75	141.63	142.03	0					10	7	2	0	0	0	0.972	1	54358	54358		0	0	1	876460	+		43024	27282	31533	31787	41972	41972					0.03184421694493267
RGGAGPPPC	9	Unmodified	_RGGAGPPPC_					0	0	0		nc|ENSG00000198719|O00548-2|DLL1;ENSG00000198719|ENST00000366756|DLL1	nc|ENSG00000198719|O00548-2|DLL1	nc|ENSG00000198719|O00548-2|DLL1	MULTI-SECPEP	A375_MHC_IP_R1	1	811.7872924804688	1	811.387933	810.380657	-0.75365	-0.00061151	-0.40186	-0.00032606	-1.1555	-0.00093757	811.3874485205458	144.49	0.17441	144.49	144.45	144.62	0					7	5	2	0	0	0	0.81896	1	55417	55417		0	0	1	1026000			43025	9306	31534	31788	41973	41973					-0.032118395285237966
RGGAGPPPC	9	Unmodified	_RGGAGPPPC_					0	0	0		nc|ENSG00000198719|O00548-2|DLL1;ENSG00000198719|ENST00000366756|DLL1	nc|ENSG00000198719|O00548-2|DLL1	nc|ENSG00000198719|O00548-2|DLL1	MULTI-MSMS	A375_MHC_IP_R2	2	811.7864990234375	1	811.387933	810.380657	-0.67488	-0.00054759	-0.41741	-0.00033868	-1.0923	-0.00088627	811.3873460367788	143.89	0.53288	143.92	143.79	144.32	0.024414					13	10	2	0	0	0	0.77827	1	56248	56248		0	0	1	2702600			43026	9306	31534	31788	41974	41974					-0.032118395285237966
RGGDRHRKPF	10	Unmodified	_RGGDRHRKPF_					0	0	0			REV__ENST00000305877.12_2_22:23522425-23523292:+|nuORF	REV__ENST00000305877.12_2_22:23522425-23523292:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	409.91943359375	3	409.226883	1224.65882	0.044468	1.8197E-05	1.2654	0.00051784	1.3099	0.00053604	409.5626576976835	27.656	0.45553	28.334	28.047	28.502	0.67857					13	8	2	0	0	0	0.93406	1	9373	9373		9.544	2.0669	1	887860	+		43027	23462	31535	31789	41975	41975					0.055477840486901187
RGGGGGRA	8	Unmodified	_RGGGGGRA_					0	0	0		ENST00000395366.2_1_2:28974733-28974904:+|nuORF;ENST00000254190.3_1_15:101791750-101792119:-|nuORF	ENST00000395366.2_1_2:28974733-28974904:+|nuORF	ENST00000395366.2_1_2:28974733-28974904:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	686.6367797851562	1	687.364496	686.357219	-0.47457	-0.0003262	-2.4206	-0.0016639	-2.8952	-0.0019901	687.3625700285197	140.64	0.25105	140.68	140.5	140.75	0.04216					8	4	2	0	0	0	0.972	1	55024	55024		0.69038	0	1	1512300			43028	10224	31536	31790	41976	41976					0.0014948274916832816
RGGGGGRA	8	Unmodified	_RGGGGGRA_					0	0	0		ENST00000395366.2_1_2:28974733-28974904:+|nuORF;ENST00000254190.3_1_15:101791750-101792119:-|nuORF	ENST00000395366.2_1_2:28974733-28974904:+|nuORF	ENST00000395366.2_1_2:28974733-28974904:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	687.364496	686.357219	-0.97754	-0.00067193	-2.3457	-0.0016124	-3.3233	-0.0022843	687.36277650302	140.76	0.2585	140.76	140.6	140.86	0	0.038616	7.7856E-06	NaN	0.69038	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1150100			43029	10224	31536	31790							0.0014948274916832816
RGGQVSLDLVL	11	Unmodified	_RGGQVSLDLVL_					0	0	0			REV__nc|ENSG00000102854|Q13421-2|MSLN	REV__nc|ENSG00000102854|Q13421-2|MSLN	MULTI-MSMS	A375_MHC_IP_R1	1	386.60205078125	3	386.227667	1155.66117	0.22037	8.5113E-05	0.25004	9.6571E-05	0.4704	0.00018168	386.2277111754258	33.394	0.50686	33.394	32.989	33.496	0					11	9	2	0	0	0	0.66366	1	10917	10917		11.065	0	1	1160400	+		43030	27153	31537	31791	41977	41977					0.08956774943135315
RGHQLSIT	8	Unmodified	_RGHQLSIT_					0	0	0		RRP9|p.L352Pfs*89|1|0.28|ENSG00000114767|chr3:51934756-51934756|A/-|frameshift_variant;ENSG00000114767|ENST00000232888|RRP9	RRP9|p.L352Pfs*89|1|0.28|ENSG00000114767|chr3:51934756-51934756|A/-|frameshift_variant	RRP9|p.L352Pfs*89|1|0.28|ENSG00000114767|chr3:51934756-51934756|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	456.6565856933594	2	456.256508	910.498464	-0.26594	-0.00012133	0.15504	7.0739E-05	-0.11089	-5.0595E-05	456.25649921329904	119.32	1.9782	119.32	117.92	119.89	0					53	38	2	0	0	0	0.77643	1	43849	43849		7.9102	0	1	18838000			43031	3243	31538	31792	41978	41978					0.039634363317986754
RGIDIPEVNW	10	Unmodified	_RGIDIPEVNW_					0	0	0		ENSG00000111364|ENST00000238146|DDX55;ENST00000539934.5_1_12:124093257-124102497:+|nuORF;ENST00000542286.5_1_12:124093257-124104017:+|nuORF	ENSG00000111364|ENST00000238146|DDX55	ENSG00000111364|ENST00000238146|DDX55	MULTI-SECPEP	A375_MHC_IP_R1	1	599.3861083984375	2	599.814387	1197.61422	-0.35582	-0.00021343	0.63054	0.00037821	0.27472	0.00016478	599.8148327055203	98.55	0.46092	98.55	98.403	98.864	0					11	8	2	0	0	0	0.68818	1	36199	36199		37.075	13.285	1	1587900			43032	2989	31539	31793	41979	41979					0.023319153920056124
RGIDIPEVNW	10	Unmodified	_RGIDIPEVNW_					0	0	0		ENSG00000111364|ENST00000238146|DDX55;ENST00000539934.5_1_12:124093257-124102497:+|nuORF;ENST00000542286.5_1_12:124093257-124104017:+|nuORF	ENSG00000111364|ENST00000238146|DDX55	ENSG00000111364|ENST00000238146|DDX55	MULTI-MATCH	A375_MHC_IP_R2	2		2	599.814387	1197.61422	-0.60722	-0.00036422	0.12685	7.6084E-05	-0.48037	-0.00028813	599.8147712853457	97.773	0.35741	98.529	98.381	98.739	0.75586	-0.010801	-0.00016817	NaN	37.075	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1182700			43033	2989	31539	31793							0.023319153920056124
RGIIDSQIRQW	11	Unmodified	_RGIIDSQIRQW_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-2|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	A375_MHC_IP_R1	1	458.3211364746094	3	457.921237	1370.74188	-0.24888	-0.00011397	0.072613	3.3251E-05	-0.17627	-8.0718E-05	457.92123177467016	60.471	0.66113	60.471	60.21	60.871	0					24	12	3	0	0	0	0.74871	1	21772	21772		40.714	32.769	1	3132000			43034	4300	31540	31794	41980	41980					0.07134055986034582
RGIIDSQIRQW	11	Unmodified	_RGIIDSQIRQW_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-2|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	A375_MHC_IP_R2	2	458.3208312988281	3	457.921237	1370.74188	-0.70518	-0.00032291	-0.30467	-0.00013952	-1.0098	-0.00046243	457.921292024636	59.641	0.55631	60.388	60.047	60.603	0.74714					26	10	4	0	0	0	0.062453	1	22557	22557		87.878	81.644	1	2303000			43035	4300	31540	31794	41981	41981					0.07134055986034582
RGIPAPSLTW	10	Unmodified	_RGIPAPSLTW_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant;HMCN1|p.P2051Lfs*3|1|0.45|ENSG00000143341|chr1:186039851-186039861|CTGTTTCTAGT/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	A375_MHC_IP_R1	1	549.50732421875	2	549.308741	1096.60293	-0.64924	-0.00035663	1.29	0.00070862	0.64078	0.00035198	549.8117175937832	87.203	0.55914	87.203	86.781	87.34	0					21	10	3	0	0	0	0.50381	1	31947	31947		47.594	19.1	1	2043000			43036	5371	31541	31795	41982	41982					0.05849138088501604
RGIPAPSLTW	10	Unmodified	_RGIPAPSLTW_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant;HMCN1|p.P2051Lfs*3|1|0.45|ENSG00000143341|chr1:186039851-186039861|CTGTTTCTAGT/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	A375_MHC_IP_R2	2	549.7081909179688	2	549.308741	1096.60293	-0.62499	-0.00034331	0.67319	0.00036979	0.048199	2.6476E-05	549.3090900928194	86.149	0.45996	86.882	86.743	87.203	0.733					17	8	3	0	0	0	0.37302	1	32780	32780		55.503	29.235	1	2183900			43037	5371	31541	31795	41983	41983					0.05849138088501604
RGKFIWTIM	9	Unmodified	_RGKFIWTIM_					0	0	0		ENST00000423324.5_1_2:238969723-238973059:+|nuORF	ENST00000423324.5_1_2:238969723-238973059:+|nuORF	ENST00000423324.5_1_2:238969723-238973059:+|nuORF	MSMS	A375_MHC_IP_R2	2	576.4202880859375	2	576.323337	1150.63212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.76	1	92.495	91.995	92.995	0.7345								0	0	0	0.15486	1	34900	34900		7.9102	0.62092	1				43038	11758	31542	31796	41984	41984					0.06282959113150355
RGKGGRGH	8	Unmodified	_RGKGGRGH_					0	0	0			REV__ENST00000552478.5_1_12:56334750-56337187:+|nuORF	REV__ENST00000552478.5_1_12:56334750-56337187:+|nuORF	MSMS	A375_MHC_IP_R1	1	412.63055419921875	2	412.733535	823.452517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.32	1	111.32	110.82	111.82	0								0	0	0	0.16876	1	40810	40810		0.69038	0	1		+		43039	26057	31543	31797	41985	41985					0.03372835940228924
RGKGKPTT	8	Unmodified	_RGKGKPTT_					0	0	0			REV__nc|ENSG00000077097|Q02880-2|TOP2B	REV__nc|ENSG00000077097|Q02880-2|TOP2B	MSMS	A375_MHC_IP_R1	1	422.6507873535156	2	422.753601	843.49265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.66	1	143.66	143.16	144.16	0								0	0	0	0.16876	1	55108	55108		2.5775	1.8871	1		+		43040	16688	31544	31798	41986	41986					0.06464337820113997
RGLATKACLL	10	Unmodified	_RGLATKACLL_					0	0	0		ENST00000542432.5_1_12:21654105-21654499:-|nuORF	ENST00000542432.5_1_12:21654105-21654499:-|nuORF	ENST00000542432.5_1_12:21654105-21654499:-|nuORF	MSMS	A375_MHC_IP_R1	1	523.2114868164062	2	523.312969	1044.61138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.75	1	132.75	132.25	133.25	0								0	0	0	0.15451	1	51185	51185		6.2058	1.8765	1				43041	13298	31545	31799	41987	41987					0.09086368733483141
RGLDFPAVNW	10	Unmodified	_RGLDFPAVNW_					0	0	0		ENSG00000178105|ENST00000322536|DDX10;ENST00000417796.1_1_9:84702254-84702629:-|nuORF	ENSG00000178105|ENST00000322536|DDX10	ENSG00000178105|ENST00000322536|DDX10	MULTI-SECPEP	A375_MHC_IP_R1	1	588.2034301757812	2	587.803823	1173.59309	-0.07604	-4.4697E-05	0.14573	8.5662E-05	0.069693	4.0966E-05	587.8039013906604	106.94	0.56253	106.94	106.57	107.14	0					27	10	4	0	0	0	0.69834	1	39236	39236		35.612	15.159	1	4494600			43042	8134	31546	31800	41988	41988					0.013239500831332407
RGLDFPAVNW	10	Unmodified	_RGLDFPAVNW_					0	0	0		ENSG00000178105|ENST00000322536|DDX10;ENST00000417796.1_1_9:84702254-84702629:-|nuORF	ENSG00000178105|ENST00000322536|DDX10	ENSG00000178105|ENST00000322536|DDX10	MULTI-SECPEP	A375_MHC_IP_R2	2	588.2033081054688	2	587.803823	1173.59309	-0.58826	-0.00034578	-0.3887	-0.00022848	-0.97696	-0.00057426	587.8036554515676	106.12	0.45799	106.88	106.63	107.09	0.75977					21	8	3	0	0	0	0.83425	1	40113	40113		24.882	7.4389	1	2783600			43043	8134	31546	31800	41989	41989					0.013239500831332407
RGLDLPQVTW	10	Unmodified	_RGLDLPQVTW_					0	0	0		ENSG00000125485|ENST00000372159|DDX31;nc|ENSG00000125485|Q9H8H2|DDX31;nc|ENSG00000125485|Q9H8H2-2|DDX31	ENSG00000125485|ENST00000372159|DDX31	ENSG00000125485|ENST00000372159|DDX31	MULTI-SECPEP	A375_MHC_IP_R1	1	593.2244262695312	2	592.824755	1183.63496	-0.31093	-0.00018433	0.15935	9.4469E-05	-0.15157	-8.9856E-05	592.8249370575296	102.65	0.60854	102.65	102.4	103.01	0					29	11	4	0	0	0	0.52647	1	37716	37716		40.725	23.612	1	4951000			43044	3969	31547	31801	41990	41990					0.05048505771674172
RGLEFLSVPST	11	Unmodified	_RGLEFLSVPST_					0	0	0		nc|ENSG00000158104|P32754-2|HPD;nc|ENSG00000158104|P32754|HPD;ENSG00000158104|ENST00000289004|HPD	nc|ENSG00000158104|P32754-2|HPD	nc|ENSG00000158104|P32754-2|HPD	MULTI-SECPEP	A375_MHC_IP_R2	2	402.14251708984375	3	402.555672	1204.64519	-0.049588	-1.9962E-05	-0.67983	-0.00027367	-0.72942	-0.00029363	402.8898703562646	44.516	0.45646	45.285	45.138	45.594	0.76909					19	8	4	0	0	0	0.98994	1	16597	16597		10.527	9.8298	1	1233100			43045	6285	31548	31802	41991	41991					0.05105068706234306
RGLERNDSW	9	Unmodified	_RGLERNDSW_					0	0	0		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	378.58819580078125	3	378.187983	1131.54212	0.11482	4.3423E-05	0.518	0.0001959	0.63282	0.00023933	378.18804083791366	25.85	0.65839	25.85	25.613	26.271	0					29	12	4	0	0	0	0.70759	1	7612	7612		15.739	9.1152	1	10037000			43046	2789	31549	31803	41992	41992					-0.0183899896173898
RGLHFHKDY	9	Unmodified	_RGLHFHKDY_					0	0	0		ENSG00000243708|ENST00000458483|PLA2G4B;nc|ENSG00000243708|P0C869-8|PLA2G4B;nc|ENSG00000243708|P0C869-7|PLA2G4B;nc|ENSG00000243708|P0C869-6|PLA2G4B;nc|ENSG00000243708|P0C869-4|PLA2G4B	ENSG00000243708|ENST00000458483|PLA2G4B	ENSG00000243708|ENST00000458483|PLA2G4B	MULTI-MSMS	A375_MHC_IP_R1	1	391.9299621582031	3	391.536835	1171.58868	0.27241	0.00010666	0.54932	0.00021508	0.82174	0.00032174	391.53692403353904	38.597	0.86665	38.597	38.218	39.085	0					23	16	2	0	0	0	0.60101	1	13002	13002		10.151	2.5416	1	1127300			43047	9812	31550	31804	41993	41993					0.009744856602310392
RGLLRLLIP	9	Unmodified	_RGLLRLLIP_					0	0	0		nc|ENSG00000087157|Q32NB8-2|PGS1;ENSG00000087157|ENST00000262764|PGS1;nc|ENSG00000087157|Q32NB8-3|PGS1	nc|ENSG00000087157|Q32NB8-2|PGS1	nc|ENSG00000087157|Q32NB8-2|PGS1	MULTI-MSMS	A375_MHC_IP_R2	2	351.3094177246094	3	350.909721	1049.70733	-0.95977	-0.00033679	1.6446	0.00057709	0.68479	0.0002403	350.9097584067662	28.773	1.2531	29.472	29.132	30.385	0.69872					58	24	3	0	0	0	0.70307	1	10203	10203		4.1895	1.9067	1	19662000			43048	1860	31551	31805	41994	41994					0.18446884635886818
RGLMKRRSS	9	Unmodified	_RGLMKRRSS_					0	0	0		ENSG00000171303|ENST00000302909|KCNK3	ENSG00000171303|ENST00000302909|KCNK3	ENSG00000171303|ENST00000302909|KCNK3	MSMS	A375_MHC_IP_R1	1	545.7157592773438	2	545.816741	1089.61893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.6	1	121.6	121.1	122.1	0								0	0	0	0.15486	1	45171	45171		6.7232	0.51738	1				43049	7593	31552	31806	41995	41995					0.07770521053771517
RGLPAARVRW	10	Unmodified	_RGLPAARVRW_					0	0	0		ENSG00000147123|ENST00000377811|NDUFB11;nc|ENSG00000147123|Q9NX14-2|NDUFB11	ENSG00000147123|ENST00000377811|NDUFB11	ENSG00000147123|ENST00000377811|NDUFB11	MULTI-MSMS	A375_MHC_IP_R1	1	394.9717712402344	3	394.571991	1180.69414	-0.12047	-4.7533E-05	-2.2571	-0.0008906	-2.3776	-0.00093813	394.5709861182376	36.424	1.1187	36.424	35.676	36.795	0					43	21	3	0	0	0	0.67901	1	12203	12203		14.957	7.3482	1	3022900			43050	5660	31553	31807	41996	41996					0.11102446576501279
RGLPAARVRW	10	Unmodified	_RGLPAARVRW_					0	0	0		ENSG00000147123|ENST00000377811|NDUFB11;nc|ENSG00000147123|Q9NX14-2|NDUFB11	ENSG00000147123|ENST00000377811|NDUFB11	ENSG00000147123|ENST00000377811|NDUFB11	MULTI-MSMS	A375_MHC_IP_R2	2	394.97186279296875	3	394.571991	1180.69414	-0.38866	-0.00015335	-0.92513	-0.00036503	-1.3138	-0.00051838	394.57141365581975	35.32	1.1106	36.083	35.223	36.333	0.76338					35	21	3	0	0	0	0.62871	1	12824	12824		18.721	11.112	1	3827900			43051	5660	31553	31807	41997	41997					0.11102446576501279
RGLPMPAITW	10	Unmodified	_RGLPMPAITW_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant;HMCN1|p.P2051Lfs*3|1|0.45|ENSG00000143341|chr1:186039851-186039861|CTGTTTCTAGT/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	A375_MHC_IP_R2	2	571.713623046875	2	571.312969	1140.61138	-0.36129	-0.00020641	0.33677	0.0001924	-0.024521	-1.4009E-05	571.3131030926969	106.95	0.50719	107.71	107.39	107.9	0.75977					20	9	3	0	0	0	0.33265	1	40406	40406		38.176	24.27	1	3221200			43052	5371	31554	31808	41998	41998					0.04670368733468422
RGLQHRTGRA	10	Unmodified	_RGLQHRTGRA_					0	0	0			REV__ENST00000378566.5_1_9:35108314-35108714:-|nuORF	REV__ENST00000378566.5_1_9:35108314-35108714:-|nuORF	MSMS	A375_MHC_IP_R2	2	384.6206970214844	3	384.555	1150.64317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.332	1	33.069	32.569	33.569	0.73692								0	0	0	0.15423	1	11499	11499		6.6235	0.43161	1		+		43053	24180	31555	31809	41999	41999					0.0738749753168122
RGLQPLKLDYR	11	Unmodified	_RGLQPLKLDYR_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MSMS	A375_MHC_IP_R2	2	453.669189453125	3	453.601616	1357.78302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.02	1	143.05	142.55	143.55	0.030731								0	0	0	0.16336	1	55905	55905		1.2148	0	1				43054	8324	31556	31810	42000	42000					0.11843817025510361
RGLRLKYY	8	Unmodified	_RGLRLKYY_					0	0	0			REV__ENSG00000136859|ENST00000373425|ANGPTL2	REV__ENSG00000136859|ENST00000373425|ANGPTL2	MULTI-MSMS	A375_MHC_IP_R1	1	535.8516845703125	2	534.819276	1067.624	-0.72344	-0.00038691	-0.049631	-2.6544E-05	-0.77307	-0.00041345	534.8188403481134	79.952	0.51151	79.952	79.625	80.136	0					22	9	3	0	0	0	0.77815	1	29221	29221		2.5775	0	1	2224500	+		43055	18964	31557	31811	42001	42001					0.09289148188031504
RGLRLLLPL	9	Unmodified	_RGLRLLLPL_					0	0	0		ENST00000378598.4_1_1:1849323-1850689:-|nuORF;ENSG00000178821|ENST00000310991|TMEM52	ENST00000378598.4_1_1:1849323-1850689:-|nuORF	ENST00000378598.4_1_1:1849323-1850689:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	351.30908203125	3	350.909721	1049.70733	-0.51927	-0.00018222	1.4286	0.00050129	0.90929	0.00031908	351.24473990715165	29.653	1.3504	29.653	29.353	30.703	0					60	26	3	0	0	0	0.64808	1	9326	9326		7.609	2.7119	1	15534000			43056	8181	31558	31812	42002	42002					0.18446884635886818
RGLRPERHL	9	Unmodified	_RGLRPERHL_					0	0	0		ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	A375_MHC_IP_R1	1	379.27728271484375	3	378.559863	1132.65776	0.3942	0.00014923	3.0201	0.0011433	3.4143	0.0012925	378.89596814436106	28.719	0.30387	28.719	28.541	28.845	0					7	5	2	0	0	0	0.69381	1	8855	8855		20.415	3.3016	1	2088800			43057	1838	31559	31813	42003	42003					0.09673569679785032
RGLRPERHL	9	Unmodified	_RGLRPERHL_					0	0	0		ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	A375_MHC_IP_R2	2	378.9367980957031	3	378.559863	1132.65776	0.096533	3.6544E-05	4.2536	0.0016102	4.3501	0.0016468	378.8961559836733	27.799	0.35404	28.477	28.301	28.655	0.67857					8	6	2	0	0	0	0.50892	1	9522	9522		19.362	2.249	1	2384900			43058	1838	31559	31813	42004	42004					0.09673569679785032
RGLVRLEYR	9	Unmodified	_RGLVRLEYR_					0	0	0		ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENSG00000100823|ENST00000216714|APEX1	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	388.25860595703125	3	387.899885	1160.67783	-0.40454	-0.00015692	-0.025766	-9.9947E-06	-0.43031	-0.00016692	388.23415731910404	24.111	0.15268	24.755	24.653	24.806	0.64368					4	2	2	0	0	0	0.70902	1	7824	7824		6.1918	1.2948	1	1237200			43059	2224	31560	31814	42005	42005					0.10391320619737598
RGLWQRWRRY	10	Unmodified	_RGLWQRWRRY_					0	0	0		SETD9|p.K193Tfs*2|1|0.07|ENSG00000155542|chr5:56913120-56913121|-/ACATG|frameshift_variant;nc|ENSG00000155542|Q8NE22-2|SETD9;ENSG00000155542|ENST00000285947|SETD9	SETD9|p.K193Tfs*2|1|0.07|ENSG00000155542|chr5:56913120-56913121|-/ACATG|frameshift_variant	SETD9|p.K193Tfs*2|1|0.07|ENSG00000155542|chr5:56913120-56913121|-/ACATG|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	739.3055419921875	2	738.907811	1475.80107	-0.35996	-0.00026597	-1.205	-0.00089036	-1.5649	-0.0011563	738.9068181487804	78.53	0.50571	78.53	78.403	78.909	0					11	9	2	0	0	0	0.70496	1	28681	28681		10.074	0.6908	1	3837400			43060	6147	31561	31815	42006	42006					0.08219996790876394
RGLYLIVW	8	Unmodified	_RGLYLIVW_					0	0	0			REV__ENST00000294964.5_1_2:42285284-42285593:+|nuORF	REV__ENST00000294964.5_1_2:42285284-42285593:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	510.203369140625	2	510.30547	1018.59639	-0.6654	-0.00033955	1.1003	0.0005615	0.43492	0.00022194	510.30600280348983	120.48	0.25145	120.48	120.3	120.55	0					8	4	3	0	0	0	0.77717	1	44666	44666		5.2307	0	1	6045400	+		43061	23377	31562	31816	42007	42007					0.08783244927792566
RGLYLIVW	8	Unmodified	_RGLYLIVW_					0	0	0			REV__ENST00000294964.5_1_2:42285284-42285593:+|nuORF	REV__ENST00000294964.5_1_2:42285284-42285593:+|nuORF	MSMS	A375_MHC_IP_R2	2	510.203125	2	510.30547	1018.59639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.84	1	120.37	119.87	120.87	0.5321								0	0	0	0.16876	1	45673	45673		5.2307	0.47466	1		+		43062	23377	31562	31816	42008	42008					0.08783244927792566
RGLYLIVW	8	Unmodified	_RGLYLIVW_					0	0	0			REV__ENST00000294964.5_1_2:42285284-42285593:+|nuORF	REV__ENST00000294964.5_1_2:42285284-42285593:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	510.30547	1018.59639	-0.6654	-0.00033955	1.1003	0.0005615	0.43492	0.00022194	510.30600280348983	120.48	0.25145	120.48	120.3	120.55	0	0	0	NaN	5.2307	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6045400	+		43063	23377	31562	31816							0.08783244927792566
RGPCKQVP	8	Unmodified	_RGPCKQVP_					0	0	0			REV__nc|ENSG00000116690|Q92954-4|PRG4	REV__nc|ENSG00000116690|Q92954-4|PRG4	MULTI-SECPEP	A375_MHC_IP_R1	1	442.6101989746094	2	442.742179	883.469806	-0.077405	-3.427E-05	1.1077	0.00049041	1.0303	0.00045614	442.742785414495	37.135	2.0368	37.135	36.845	38.882	0					47	39	2	0	0	0	0.96266	1	12500	12500		7.2892	0	1	1151100	+		43064	17965	31563	31817	42009	42009					0.023409954310068315
RGPLTTWVH	9	Unmodified	_RGPLTTWVH_					0	0	0		ENST00000262622.4_1_19:34175671-34262890:+|nuORF	ENST00000262622.4_1_19:34175671-34262890:+|nuORF	ENST00000262622.4_1_19:34175671-34262890:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	533.6819458007812	2	533.793258	1065.57196	-0.59266	-0.00031636	-0.84904	-0.00045321	-1.4417	-0.00076957	533.7933760031719	70.807	0.71667	70.807	70.289	71.005	0					17	13	2	0	0	0	0.71541	1	25622	25622		16.942	9.3333	1	1847900			43065	10310	31564	31818	42010	42010					0.041799847742595375
RGPPSAWL	8	Unmodified	_RGPPSAWL_					0	0	0			REV__nc|ENSG00000213402|Q14761|PTPRCAP	REV__nc|ENSG00000213402|Q14761|PTPRCAP	MSMS	A375_MHC_IP_R1	1	442.1394958496094	2	442.24287	882.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.453	1	39.453	38.953	39.953	0								0	0	0	0.16876	1	13486	13486		32.117	0	1		+		43066	27488	31565	31819	42011	42011					0.025249527914070313
RGPPSAWL	8	Unmodified	_RGPPSAWL_					0	0	0			REV__nc|ENSG00000213402|Q14761|PTPRCAP	REV__nc|ENSG00000213402|Q14761|PTPRCAP	MSMS	A375_MHC_IP_R1	1	442.13958740234375	2	442.24287	882.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.68	1	40.68	40.18	41.18	0								0	0	0	0.16876	1	13996	13996		32.117	0	1		+		43067	27488	31565	31819	42012	42012					0.025249527914070313
RGPPSAWL	8	Unmodified	_RGPPSAWL_					0	0	0			REV__nc|ENSG00000213402|Q14761|PTPRCAP	REV__nc|ENSG00000213402|Q14761|PTPRCAP	MSMS	A375_MHC_IP_R2	2	442.1393737792969	2	442.24287	882.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.778	1	39.552	39.052	40.052	0.77451								0	0	0	0.16876	1	14292	14292		24.674	0	1		+		43068	27488	31565	31819	42013	42013					0.025249527914070313
RGPRLASL	8	Unmodified	_RGPRLASL_					0	0	0			REV__ENST00000379263.7_1_7:102985082-102985142:-|nuORF	REV__ENST00000379263.7_1_7:102985082-102985142:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	435.6692199707031	2	435.269419	868.524284	-0.43181	-0.00018796	-0.0019065	-8.2982E-07	-0.43372	-0.00018879	435.269346380071	133.94	2.2867	133.94	133.76	136.05	0					101	44	5	0	0	0	0.7779	1	51869	51869		2.5775	0	1	123290000	+		43069	24194	31566	31820	42014	42014					0.0847633057406938
RGPRLASL	8	Unmodified	_RGPRLASL_					0	0	0			REV__ENST00000379263.7_1_7:102985082-102985142:-|nuORF	REV__ENST00000379263.7_1_7:102985082-102985142:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	435.269419	868.524284	-0.43181	-0.00018796	-0.0019065	-8.2982E-07	-0.43372	-0.00018879	435.269346380071	133.94	2.2867	133.94	133.76	136.05	0	-0.021368	-2.6664E-05	NaN	2.5775	101	44	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123290000	+		43070	24194	31566	31820							0.0847633057406938
RGQLSPSI	8	Unmodified	_RGQLSPSI_					0	0	0		ENST00000361906.7_1_22:38615713-38615971:-|nuORF	ENST00000361906.7_1_22:38615713-38615971:-|nuORF	ENST00000361906.7_1_22:38615713-38615971:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	429.6453857421875	2	429.245609	856.476666	0.07863	3.3752E-05	-0.68136	-0.00029247	-0.60273	-0.00025872	429.2452341580185	42.853	0.55864	42.853	42.587	43.146	0					22	10	3	0	0	0	0.69122	1	14859	14859		48.346	2.3249	1	5399600			43071	11052	31567	31821	42015	42015					0.04268631583215665
RGQPEKELER	10	Unmodified	_RGQPEKELER_					0	0	0		ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	MULTI-MSMS	A375_MHC_IP_R1	1	414.93603515625	3	414.558076	1240.6524	0.63451	0.00026304	1.4607	0.00060555	2.0952	0.00086859	414.5587249214407	21.834	0.4066	21.834	21.555	21.962	0					10	7	2	0	0	0	0.70565	1	5757	5757		9.7643	0	1	1101500			43072	6153	31568	31822	42016	42016					0.041698013066252315
RGQPEKELER	10	Unmodified	_RGQPEKELER_					0	0	0		ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	MULTI-MATCH	A375_MHC_IP_R2	2		3	414.558076	1240.6524	-0.33241	-0.0001378	2.7651	0.0011463	2.4327	0.0010085	414.55913637818094	21.113	0.20256	21.732	21.625	21.828	0.61932	-0.050926	0.0011254	NaN	9.7643	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	463820			43073	6153	31568	31822							0.041698013066252315
RGQPPFQRLGP	11	Unmodified	_RGQPPFQRLGP_					0	0	0		ENST00000525598.1_1_11:118984241-118984860:+|nuORF	ENST00000525598.1_1_11:118984241-118984860:+|nuORF	ENST00000525598.1_1_11:118984241-118984860:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	417.6094665527344	3	418.235156	1251.68364	-0.29742	-0.00012439	0.55034	0.00023017	0.25292	0.00010578	418.23542344281975	35.346	0.50531	36.11	35.878	36.384	0.76338					13	9	2	0	0	0	0.99916	1	12794	12794		4.4062	1.0865	1	1350500			43074	13073	31569	31823	42017	42017					0.06786419131412913
RGQRVSFRLHI	11	Unmodified	_RGQRVSFRLHI_					0	0	0		nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.R4794Afs*50|1|0.26|ENSG00000154358|chr1:228319130-228319130|C/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.C2753Afs*104|1|0.16|ENSG00000154358|chr1:228281992-228282004|TGCAGCTTTGAGT/-|frameshift_variant;OBSCN|p.V3655Wfs*18|1|0.18|ENSG00000154358|chr1:228293443-228293443|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9-3|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-SECPEP	A375_MHC_IP_R2	2	684.7842407226562	2	684.902194	1367.78984	-0.57513	-0.00039391	-1.6511	-0.0011308	-2.2262	-0.0015247	684.9009913543529	133.59	0.40762	133.76	133.65	134.06	0.16487					12	7	2	0	0	0	0.99791	1	52600	52600		4.897	1.9018	1	1311900			43075	14690	31570	31824	42018	42018					0.12065174696749636
RGRCRFLSA	9	Unmodified	_RGRCRFLSA_					0	0	0		ENST00000458587.6_1_X:152989191-152989299:-|nuORF	ENST00000458587.6_1_X:152989191-152989299:-|nuORF	ENST00000458587.6_1_X:152989191-152989299:-|nuORF	MSMS	A375_MHC_IP_R2	2	355.699462890625	3	355.862665	1064.56617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.66	1	19.264	18.764	19.764	0.60308								0	0	0	0.15486	1	5562	5562		0.23584	0	1				43076	12149	31571	31825	42019	42019					0.036465629909798736
RGRFDKGNIW	10	Unmodified	_RGRFDKGNIW_					0	0	0		ENSG00000011426|ENST00000265748|ANLN;nc|ENSG00000011426|Q9NQW6-2|ANLN;ENST00000495714.1_1_7:36447357-36456706:+|nuORF	ENSG00000011426|ENST00000265748|ANLN	ENSG00000011426|ENST00000265748|ANLN	MULTI-SECPEP	A375_MHC_IP_R1	1	417.29132080078125	3	416.891389	1247.65234	0.28811	0.00012011	-0.1089	-4.5399E-05	0.17921	7.4713E-05	416.89131817701815	33.758	0.45386	33.758	33.547	34.001	0					19	8	3	0	0	0	0.89369	1	11072	11072		20.871	4.5966	1	2479600			43077	1001	31572	31826	42020	42020					0.03841846097316193
RGRFDKGNIW	10	Unmodified	_RGRFDKGNIW_					0	0	0		ENSG00000011426|ENST00000265748|ANLN;nc|ENSG00000011426|Q9NQW6-2|ANLN;ENST00000495714.1_1_7:36447357-36456706:+|nuORF	ENSG00000011426|ENST00000265748|ANLN	ENSG00000011426|ENST00000265748|ANLN	MULTI-MSMS	A375_MHC_IP_R2	2	417.2909851074219	3	416.891389	1247.65234	-0.10193	-4.2494E-05	-0.1678	-6.9956E-05	-0.26973	-0.00011245	416.8913153786564	32.739	0.40582	33.476	33.265	33.671	0.73692					18	7	3	0	0	0	0.36067	1	11707	11707		25.997	1.0403	1	3088700			43078	1001	31572	31826	42021	42021					0.03841846097316193
RGRGRRPSRQW	11	Unmodified	_RGRGRRPSRQW_					0	0	0		ENST00000253031.6_1_19:11033046-11033160:-|nuORF	ENST00000253031.6_1_19:11033046-11033160:-|nuORF	ENST00000253031.6_1_19:11033046-11033160:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	706.7972412109375	2	706.398141	1410.78173	-0.85134	-0.00060139	0.17176	0.00012133	-0.67958	-0.00048006	706.3981461600098	132.97	0.97069	132.97	132.49	133.46	0					30	18	3	0	0	0	0.73828	1	51303	51303		2.4985	1.0166	1	5122800			43079	10213	31573	31827	42022	42022					0.09277040499978284
RGRGRRPSRQW	11	Unmodified	_RGRGRRPSRQW_					0	0	0		ENST00000253031.6_1_19:11033046-11033160:-|nuORF	ENST00000253031.6_1_19:11033046-11033160:-|nuORF	ENST00000253031.6_1_19:11033046-11033160:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	706.398141	1410.78173	-0.85134	-0.00060139	0.17176	0.00012133	-0.67958	-0.00048006	706.3981461600098	132.97	0.97069	132.97	132.49	133.46	0	-0.051507	0.00027069	NaN	2.4985	30	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5122800			43080	10213	31573	31827							0.09277040499978284
RGRPKRRRKPQ	11	Unmodified	_RGRPKRRRKPQ_					0	0	0		ENSG00000170468|ENST00000304061|RIOX1	ENSG00000170468|ENST00000304061|RIOX1	ENSG00000170468|ENST00000304061|RIOX1	MSMS	A375_MHC_IP_R1	1	718.2583618164062	2	717.953084	1433.89161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.92	1	102.92	102.42	103.42	0								0	0	0	0.16334	1	37823	37823		1.3295	0	1				43081	7510	31574	31828	42023	42023					0.19202465839134675
RGRPKRRRKPQ	11	Unmodified	_RGRPKRRRKPQ_					0	0	0		ENSG00000170468|ENST00000304061|RIOX1	ENSG00000170468|ENST00000304061|RIOX1	ENSG00000170468|ENST00000304061|RIOX1	MSMS	A375_MHC_IP_R1	1	717.7285766601562	2	717.953084	1433.89161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.95	1	102.95	102.45	103.45	0								0	0	0	0.16334	1	37830	37830		1.3295	0	1				43082	7510	31574	31828	42024	42024					0.19202465839134675
RGRPVKPTW	9	Unmodified	_RGRPVKPTW_					0	0	0		ENST00000246421.4_1_1:1671049-1677425:-|nuORF	ENST00000246421.4_1_1:1671049-1677425:-|nuORF	ENST00000246421.4_1_1:1671049-1677425:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	366.60540771484375	3	366.217325	1095.63015	0.16767	6.1402E-05	0.29873	0.0001094	0.4664	0.0001708	366.2174462616774	19.719	0.60874	19.719	19.471	20.079	0					18	11	2	0	0	0	0.41879	2	4998	4956;4998		23.79	12.99	1	3072300			43083	10188	31575	31829	42025;42026	42026					0.0861566641956415
RGRRALAA	8	Unmodified	_RGRRALAA_					0	0	0			REV__ENSG00000126895|ENST00000646375|AVPR2	REV__ENSG00000126895|ENST00000646375|AVPR2	MSMS	A375_MHC_IP_R2	2	435.66943359375	2	435.77266	869.530767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.92	1	135.06	134.56	135.56	0.13901								0	0	0	0.16876	1	53064	53064		0	0	1		+		43084	18406	31576	31830	42027	42027					0.0907826852544531
RGRRPQERLQP	11	Unmodified	_RGRRPQERLQP_					0	0	0			REV__ENST00000260502.10_1_1:94140382-94147383:-|nuORF	REV__ENST00000260502.10_1_1:94140382-94147383:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	697.2987060546875	2	696.900183	1391.78581	-0.84522	-0.00058904	-0.11309	-7.881E-05	-0.95831	-0.00066785	696.8996970704397	131.4	1.1137	131.4	130.82	131.93	0					53	21	3	0	0	0	0.99985	1	50828	50828		1.0715	0	1	8763500	+		43085	23175	31577	31831	42028	42028					0.10559085203021823
RGRRPQERLQP	11	Unmodified	_RGRRPQERLQP_					0	0	0			REV__ENST00000260502.10_1_1:94140382-94147383:-|nuORF	REV__ENST00000260502.10_1_1:94140382-94147383:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	696.7683715820312	2	696.900183	1391.78581	-0.68268	-0.00047576	-0.086278	-6.0127E-05	-0.76896	-0.00053589	696.8996934251796	131.28	1.2204	131.47	130.88	132.1	0.18953					55	23	3	0	0	0	0.99738	1	51656	51656		2.7352	1.8708	1	9097500	+		43086	23175	31577	31831	42029	42029					0.10559085203021823
RGRRRRRRRRW	11	Unmodified	_RGRRRRRRRRW_					0	0	0			REV__ENST00000288502.8_2_9:117373626-117379440:+|nuORF	REV__ENST00000288502.8_2_9:117373626-117379440:+|nuORF	MSMS	A375_MHC_IP_R2	2	833.939208984375	2	834.017947	1666.02134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.94	1	126.23	125.73	126.73	0.2951								0	0	0	0.1636	1	49209	49209		0	0	1		+		43087	23347	31578	31832	42030	42030					0.21497079961659438
RGRVHRKR	8	Unmodified	_RGRVHRKR_					0	0	0			REV__ENST00000395474.7_2_3:49044614-49044830:+|nuORF	REV__ENST00000395474.7_2_3:49044614-49044830:+|nuORF	MSMS	A375_MHC_IP_R2	2	355.59759521484375	3	355.560197	1063.65876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.702	1	36.465	35.965	36.965	0.76338								0	0	0	0.16876	1	12960	12960		1.4819	0.41044	1		+		43088	24322	31579	31833	42031	42031					0.1294782883935568
RGRVPEELRE	10	Unmodified	_RGRVPEELRE_					0	0	0		ENST00000507686.1_1_4:2749659-2757749:-|nuORF;ENST00000510267.5_2_4:2749659-2758016:-|nuORF	ENST00000507686.1_1_4:2749659-2757749:-|nuORF	ENST00000507686.1_1_4:2749659-2757749:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	414.9360656738281	3	414.230071	1239.66838	-0.32698	-0.00013544	2.524	0.0010455	2.1971	0.00091008	414.23091912655286	21.26	0.3031	21.879	21.625	21.928	0.61932					7	5	2	0	0	0	0.93407	1	6691	6691		10.315	7.4719	1	1368400			43089	12868	31580	31834	42032	42032					0.05813507543552987
RGRVYRRRSRP	11	Unmodified	_RGRVYRRRSRP_					0	0	0			REV__ENSG00000166851|ENST00000300093|PLK1	REV__ENSG00000166851|ENST00000300093|PLK1	MULTI-MSMS	A375_MHC_IP_R1	1	730.8355712890625	2	729.934891	1457.85523	-0.81472	-0.00059469	0.36267	0.00026472	-0.45205	-0.00032997	729.9350458383597	133.48	2.8452	133.48	133	135.84	0					173	55	6	0	0	0	0.73902	1	51993	51993		0.30703	0.30703	1	194380000	+		43090	20709	31581	31835	42033	42033					0.1446158894243581
RGSRWLGGSW	10	Unmodified	_RGSRWLGGSW_					0	0	0		tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	581.6987915039062	2	581.299239	1160.58392	-0.15202	-8.8372E-05	-0.81338	-0.00047282	-0.9654	-0.00056119	581.2988559792666	63.248	0.51112	63.248	62.966	63.477	0					16	9	2	0	0	0	0.83355	1	22845	22845		22.736	4.3632	1	3160400			43091	29814	31582	31836	42034	42034					0.010056015174541244
RGSRWLGGSW	10	Unmodified	_RGSRWLGGSW_					0	0	0		tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	581.6983032226562	2	581.299239	1160.58392	-0.40796	-0.00023714	-1.0657	-0.0006195	-1.4737	-0.00085664	581.2984832295562	62.582	0.50766	63.325	62.976	63.484	0.74263					20	9	3	0	0	0	0.72086	1	23700	23700		24.021	0.23079	1	2685300			43092	29814	31582	31836	42035	42035					0.010056015174541244
RGSVQHCSL	9	Unmodified	_RGSVQHCSL_					0	0	0		ENST00000457681.1_1_9:115246877-115248798:-|nuORF;ENST00000463223.1_1_9:115247655-115248798:-|nuORF	ENST00000457681.1_1_9:115246877-115248798:-|nuORF	ENST00000457681.1_1_9:115246877-115248798:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	494.6664123535156	2	493.74545	985.476348	-0.018862	-9.313E-06	0.39059	0.00019285	0.37173	0.00018354	493.7454844528599	44.502	1.1735	44.502	44.01	45.183	0					63	22	6	0	0	0	0.4867	1	15667	15667		20.454	0	1	43991000			43093	12142	31583	31837	42036	42036					-0.016971114082707572
RGSWRTARWFW	11	Unmodified	_RGSWRTARWFW_					0	0	0			REV__ENST00000361972.8_1_10:7212945-7217999:-|nuORF	REV__ENST00000361972.8_1_10:7212945-7217999:-|nuORF	MSMS	A375_MHC_IP_R1	1	503.65350341796875	3	503.593455	1507.75853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.795	1	32.795	32.295	33.295	0								0	0	0	0.16305	1	10630	10630		2.8433	0.4085	1		+		43094	23927	31584	31838	42037	42037					0.02496601662642206
RGTDFVRTL	9	Unmodified	_RGTDFVRTL_					0	0	0		ENST00000470731.5_1_7:2598728-2641152:+|nuORF;nc|ENSG00000106012|Q6IPM2-2|IQCE;nc|ENSG00000106012|Q6IPM2-3|IQCE;nc|ENSG00000106012|Q6IPM2-4|IQCE;ENSG00000106012|ENST00000402050|IQCE	ENST00000470731.5_1_7:2598728-2641152:+|nuORF	ENST00000470731.5_1_7:2598728-2641152:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1953735351562	2	532.795998	1063.57744	-1.0092	-0.00053769	0.075001	3.996E-05	-0.93418	-0.00049773	532.795921097865	41.551	0.40868	41.551	41.317	41.725	0					19	7	3	0	0	0	0.63622	1	14358	14358		10.151	6.2742	1	5579100			43095	2659	31585	31839	42038	42038					0.048196635660815446
RGTKLRLLF	9	Unmodified	_RGTKLRLLF_					0	0	0		ENST00000328257.12_1_11:73882344-73914840:+|nuORF	ENST00000328257.12_1_11:73882344-73914840:+|nuORF	ENST00000328257.12_1_11:73882344-73914840:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	368.5942077636719	3	368.573109	1102.6975	0.0047044	1.7339E-06	0.089279	3.2906E-05	0.093984	3.464E-05	368.5731216682627	49.967	0.76431	50.722	50.394	51.159	0.75406					42	14	4	0	0	0	0.44183	1	18721	18721		22.658	0	1	21852000			43096	10747	31586	31840	42039	42039					0.1502569663050508
RGTRIQAVRL	10	Unmodified	_RGTRIQAVRL_					0	0	0			REV__ENST00000474780.1_1_3:19987557-19988503:-|nuORF	REV__ENST00000474780.1_1_3:19987557-19988503:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	389.9693298339844	3	390.579034	1168.71527	0.10045	3.9235E-05	2.1615	0.00084422	2.2619	0.00088345	390.91403269594736	40.122	0.56119	40.122	39.845	40.406	0					17	10	3	0	0	0	0.91643	1	13823	13823		12.175	3.423	1	752990	+		43097	25161	31587	31841	42040	42040					0.1376641188535359
RGTTILAKHAW	11	Unmodified	_RGTTILAKHAW_					0	0	0		ENST00000463317.6_1_X:155111099-155127806:+|nuORF;ENST00000479687.6_1_X:155111099-155119276:+|nuORF;nc|ENSG00000292366|P51809-3|VAMP7;ENSG00000124333|ENST00000286448|VAMP7;nc|ENSG00000292366|P51809-2|VAMP7	ENST00000463317.6_1_X:155111099-155127806:+|nuORF	ENST00000463317.6_1_X:155111099-155127806:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	419.1350402832031	3	418.57529	1252.70404	-0.089648	-3.7524E-05	-0.40372	-0.00016899	-0.49336	-0.00020651	418.5751827242961	30.824	0.25121	31.542	31.367	31.618	0.71857					6	4	2	0	0	0	0.99819	1	10879	10879		3.5927	0.96144	1	1215000			43098	12211	31588	31842	42041	42041					0.08779589791220133
RGVPDAKIRIF	11	Unmodified	_RGVPDAKIRIF_					0	0	0		ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF	ENSG00000165496|ENST00000298283|RPL10L	ENSG00000165496|ENST00000298283|RPL10L	MULTI-MSMS	A375_MHC_IP_R1	1	424.9909973144531	3	424.59094	1270.75099	0.047208	2.0044E-05	0.03512	1.4912E-05	0.082328	3.4956E-05	424.59098769950964	51.599	0.55736	51.599	51.322	51.879	0					26	10	3	0	0	0	0.28731	1	18317	18317		47.724	25.925	1	3827200			43099	5679	31589	31843	42042	42042					0.12644449342337793
RGVPDAKIRIF	11	Unmodified	_RGVPDAKIRIF_					0	0	0		ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF	ENSG00000165496|ENST00000298283|RPL10L	ENSG00000165496|ENST00000298283|RPL10L	MULTI-MSMS	A375_MHC_IP_R2	2	424.9909362792969	3	424.59094	1270.75099	-0.27305	-0.00011594	0.022709	9.6421E-06	-0.25035	-0.00010629	424.59100560446063	50.671	0.55529	51.425	51.209	51.765	0.75406					22	10	3	0	0	0	0.2494	1	19078	19078		50.648	26.847	1	3579800			43100	5679	31589	31843	42043	42043					0.12644449342337793
RGVWQVRG	8	Unmodified	_RGVWQVRG_					0	0	0		PUF60|p.T484Rfs*40|1|0.47|ENSG00000179950|chr8:143816748-143816749|TG/-|frameshift_variant	PUF60|p.T484Rfs*40|1|0.47|ENSG00000179950|chr8:143816748-143816749|TG/-|frameshift_variant	PUF60|p.T484Rfs*40|1|0.47|ENSG00000179950|chr8:143816748-143816749|TG/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	479.1924133300781	2	479.272493	956.530432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.882	1	44.882	44.382	45.382	0								0	0	0	0.16876	1	15679	15679		19.439	0	1				43101	15256	31590	31844	42044	42044					0.05042848805612721
RGWDGFVEF	9	Unmodified	_RGWDGFVEF_					0	0	0		ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	MULTI-SECPEP	A375_MHC_IP_R2	2	557.1624755859375	2	556.761623	1111.50869	-0.74048	-0.00041227	-1.7228	-0.00095921	-2.4633	-0.0013715	556.7617335455935	105.41	0.76361	106.17	105.82	106.58	0.76308					34	14	4	0	0	0	0.37663	1	39863	39863		43.772	11.467	1	4167600			43102	5381	31591	31845	42045	42045					-0.042600007336204726
RGWRRRRQNRF	11	Unmodified	_RGWRRRRQNRF_					0	0	0		PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant;PRKAR1A|p.A48Dfs*82|1|0.42|ENSG00000108946|chr17:68515541-68515542|-/AT|frameshift_variant	PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant	PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	530.6165771484375	3	529.969919	1586.88793	-0.86053	-0.00045605	0.28843	0.00015286	-0.5721	-0.00030319	530.3052641840062	135.85	0.76587	135.85	135.49	136.25	0					33	14	3	0	0	0	0.73934	1	52256	52256		0	0	1	3124200			43103	15226	31592	31846	42046	42046					0.11795796065302966
RGYAAAAAAAA	11	Unmodified	_RGYAAAAAAAA_					0	0	0			REV__ENST00000462803.5_1_9:82286241-82340056:+|nuORF;REV__nc|ENSG00000140332|Q04726-2|TLE3	REV__ENST00000462803.5_1_9:82286241-82340056:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	963.9010009765625	1	963.500655	962.493378	0.095904	9.2404E-05	-0.087343	-8.4155E-05	0.0085609	8.2484E-06	963.5003483997577	146.26	0.39618	146.28	146.12	146.52	0.019913					88	48	2	0	0	0	0.73934	1	56943	56943		0	0	1	196550	+		43104	17469;19205	31593	31847	42047	42047					0.010631324691530608
RGYALTAL	8	Unmodified	_RGYALTAL_					0	0	0		ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENSG00000213983|ENST00000397120|AP1G2;ENST00000554982.5_1_14:24031495-24032684:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	433.1505126953125	2	432.750527	863.486502	-0.065827	-2.8487E-05	0.33499	0.00014497	0.26916	0.00011648	432.75056340843065	56.676	0.50784	56.676	56.397	56.905	0					14	9	2	0	0	0	0.68328	1	20335	20335		39.957	0	1	2596500			43105	9594	31594	31848	42048	42048					0.0492981958858536
RGYALTAL	8	Unmodified	_RGYALTAL_					0	0	0		ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENSG00000213983|ENST00000397120|AP1G2;ENST00000554982.5_1_14:24031495-24032684:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	433.1502685546875	2	432.750527	863.486502	-0.35455	-0.00015343	0.12241	5.2975E-05	-0.23213	-0.00010046	432.7504521156964	55.73	0.40658	56.48	56.287	56.693	0.75014					12	7	2	0	0	0	0.81376	1	21074	21074		39.957	0	1	2650900			43106	9594	31594	31848	42049	42049					0.0492981958858536
RGYDFPAV	8	Unmodified	_RGYDFPAV_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-SECPEP	A375_MHC_IP_R1	1	463.13226318359375	2	462.732335	923.450116	-0.13044	-6.0358E-05	0.073378	3.3955E-05	-0.05706	-2.6404E-05	462.7322960132027	62.383	0.61419	62.383	62.097	62.711	0					28	11	3	0	0	0	0.60242	1	22507	22507		46.021	7.8698	1	5495100			43107	1083	31595	31849	42050	42050					-0.014670573081048133
RGYKIPVI	8	Unmodified	_RGYKIPVI_					0	0	0		ENST00000395613.2_1_22:51193627-51193861:-|nuORF;ENST00000558020.1_1_15:101828356-101835383:-|nuORF;ENST00000560856.5_1_15:101827905-101835383:-|nuORF;ENST00000558036.5_1_15:101827046-101835383:-|nuORF;ENSG00000131876|ENST00000254193|SNRPA1	ENST00000395613.2_1_22:51193627-51193861:-|nuORF	ENST00000395613.2_1_22:51193627-51193861:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	473.6972961425781	2	473.297645	944.580737	-1.0085	-0.00047733	0.23155	0.00010959	-0.77697	-0.00036774	473.29768266359	52.509	0.55721	53.261	53.032	53.59	0.75225					15	10	3	0	0	0	0.91495	1	19823	19823		18.135	0	1	3571700			43108	4354	31596	31850	42051	42051					0.10622958410738192
RGYPDSESTW	10	Unmodified	_RGYPDSESTW_					0	0	0		ENSG00000101945|ENST00000376687|SUV39H1;nc|ENSG00000101945|O43463-2|SUV39H1	ENSG00000101945|ENST00000376687|SUV39H1	ENSG00000101945|ENST00000376687|SUV39H1	MULTI-MSMS	A375_MHC_IP_R1	1	599.662109375	2	599.262185	1196.50982	-0.30891	-0.00018512	0.14414	8.6378E-05	-0.16477	-9.8738E-05	599.2621120198809	40.41	0.71252	40.41	40.05	40.762	0					28	13	3	0	0	0	0.095173	1	13861	13861		65.474	42.737	1	2925000			43109	2337	31597	31851	42052	42052					-0.08057831155360873
RGYPDSESTW	10	Unmodified	_RGYPDSESTW_					0	0	0		ENSG00000101945|ENST00000376687|SUV39H1;nc|ENSG00000101945|O43463-2|SUV39H1	ENSG00000101945|ENST00000376687|SUV39H1	ENSG00000101945|ENST00000376687|SUV39H1	MULTI-MSMS	A375_MHC_IP_R2	2	599.6618041992188	2	599.262185	1196.50982	-0.56751	-0.00034009	0.73818	0.00044237	0.17067	0.00010228	599.2621991855527	39.817	0.81145	40.592	40.169	40.98	0.77451					31	15	3	0	0	0	0.13001	1	14672	14672		65.474	42.737	1	4244700			43110	2337	31597	31851	42053	42053					-0.08057831155360873
RGYVLPVV	8	Unmodified	_RGYVLPVV_					0	0	0		ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	452.17626953125	2	451.776545	901.538538	-0.21459	-9.6948E-05	0.29027	0.00013114	0.075673	3.4187E-05	451.7766282039412	76.008	0.75693	76.008	75.664	76.421	0					24	14	2	0	0	0	0.91495	1	27710	27710		24.674	0	1	2850500			43111	2257	31598	31852	42054	42054					0.08382983002377387
RHDEIRKKY	9	Unmodified	_RHDEIRKKY_					0	0	0		ENSG00000183255|ENST00000330938|PTTG1IP	ENSG00000183255|ENST00000330938|PTTG1IP	ENSG00000183255|ENST00000330938|PTTG1IP	MULTI-SECPEP	A375_MHC_IP_R1	1	415.9472961425781	3	415.566794	1243.67855	0.057831	2.4033E-05	-0.085054	-3.5346E-05	-0.027223	-1.1313E-05	415.56675185446693	32.751	0.50489	32.751	32.535	33.04	0					21	9	3	0	0	0	0.775	1	10536	10536		10.8	2.0477	1	4730600			43112	8478	31599	31853	42055	42055					0.06646115268790709
RHDLVKRLDRQ	11	Unmodified	_RHDLVKRLDRQ_					0	0	0			REV__ENST00000376964.3_1_X:47517084-47518326:-|nuORF	REV__ENST00000376964.3_1_X:47517084-47518326:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	479.6796875	3	479.279536	1434.81678	-0.36383	-0.00017437	0.51671	0.00024765	0.15289	7.3275E-05	479.27961865294355	142.34	0.60941	142.37	142.03	142.64	0.030731					26	11	3	0	0	0	0.73818	1	55691	55691		1.1098	0.6038	1	2154400	+		43113	18393	31600	31854	42056	42056					0.11676238517247839
RHDLVKRLDRQ	11	Unmodified	_RHDLVKRLDRQ_					0	0	0			REV__ENST00000376964.3_1_X:47517084-47518326:-|nuORF	REV__ENST00000376964.3_1_X:47517084-47518326:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	479.279536	1434.81678	-0.79428	-0.00038068	0.78151	0.00037456	-0.012767	-6.1188E-06	479.27985140422015	142.29	0.65759	142.29	141.83	142.49	0	-0.040183	0.00019038	NaN	1.1098	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1868400	+		43114	18393	31600	31854							0.11676238517247839
RHDLVKRLDRQ	11	Unmodified	_RHDLVKRLDRQ_					0	0	0			REV__ENST00000376964.3_1_X:47517084-47518326:-|nuORF	REV__ENST00000376964.3_1_X:47517084-47518326:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	479.279536	1434.81678	-0.36383	-0.00017437	0.51671	0.00024765	0.15289	7.3275E-05	479.27961865294355	142.34	0.60941	142.37	142.03	142.64	0.030731	0.040183	-0.00019036	NaN	1.1098	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2154400	+		43115	18393	31600	31854							0.11676238517247839
RHENILSLI	9	Unmodified	_RHENILSLI_					0	0	0			REV__nc|ENSG00000166340|O14773-2|TPP1	REV__nc|ENSG00000166340|O14773-2|TPP1	MULTI-SECPEP	A375_MHC_IP_R1	1	365.6243896484375	3	365.548741	1093.62439	0.34544	0.00012627	0.12938	4.7296E-05	0.47482	0.00017357	365.54868290448275	20.51	0.25386	20.51	20.384	20.638	0					6	4	2	0	0	0	0.78353	1	5269	5269		6.1918	5.2296	1	480320	+		43116	20670	31601	31855	42057	42057					0.08132523117251367
RHETERFGYLY	11	Unmodified	_RHETERFGYLY_					0	0	0			REV__MGAM|p.G1135R|1|0.44|ENSG00000257335|chr7:142055646-142055646|G/A|missense_variant	REV__MGAM|p.G1135R|1|0.44|ENSG00000257335|chr7:142055646-142055646|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	736.2586669921875	2	735.859857	1469.70516	-0.73579	-0.00054144	-0.17008	-0.00012516	-0.90587	-0.0006666	735.8595074440288	93.134	0.60848	93.873	93.546	94.154	0.73902					30	11	3	0	0	0	0.7039	1	35377	35377		15.248	3.0078	1	7548300	+		43117	27014	31602	31856	42058	42058					-0.010902406304921897
RHETERFGYLY	11	Unmodified	_RHETERFGYLY_					0	0	0			REV__MGAM|p.G1135R|1|0.44|ENSG00000257335|chr7:142055646-142055646|G/A|missense_variant	REV__MGAM|p.G1135R|1|0.44|ENSG00000257335|chr7:142055646-142055646|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	735.859857	1469.70516	-0.52265	-0.00038459	-0.36417	-0.00026798	-0.88681	-0.00065257	735.8594076178761	93.817	0.55684	93.817	93.533	94.09	0	-0.027709	-9.5508E-05	NaN	15.248	32	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6314600	+		43118	27014	31602	31856							-0.010902406304921897
RHETERFGYLY	11	Unmodified	_RHETERFGYLY_					0	0	0			REV__MGAM|p.G1135R|1|0.44|ENSG00000257335|chr7:142055646-142055646|G/A|missense_variant	REV__MGAM|p.G1135R|1|0.44|ENSG00000257335|chr7:142055646-142055646|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	735.859857	1469.70516	-0.73579	-0.00054144	-0.17008	-0.00012516	-0.90587	-0.0006666	735.8595074440288	93.134	0.60848	93.873	93.546	94.154	0.73902	0.027709	0.00019013	NaN	15.248	30	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7548300	+		43119	27014	31602	31856							-0.010902406304921897
RHEWWRWWGWM	11	Unmodified	_RHEWWRWWGWM_					0	0	0			REV__ENST00000564785.5_1_15:75650962-75651301:-|nuORF	REV__ENST00000564785.5_1_15:75650962-75651301:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	858.792724609375	2	858.393679	1714.7728	-0.56517	-0.00048514	-0.72592	-0.00062313	-1.2911	-0.0011083	858.3933495370799	88.556	0.45547	89.287	89.026	89.482	0.7318					15	8	3	0	0	0	0.73934	1	33705	33705		0	0	1	1583900	+		43120	26205	31603	31857	42059	42059					-0.05599069180743754
RHHEEQRQKEE	11	Unmodified	_RHHEEQRQKEE_					0	0	0		nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MSMS	A375_MHC_IP_R1	1	502.6513366699219	3	502.57831	1504.7131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.236	1	21.236	20.736	21.736	0								0	0	0	0.16336	1	5556	5556		1.2148	0.76031	1				43121	1717	31604	31858	42060	42060					-0.019067133810722225
RHHHDALTNIV	11	Unmodified	_RHHHDALTNIV_					0	0	0			REV__ENSG00000254206|ENST00000698511|NPIPB11	REV__ENSG00000254206|ENST00000698511|NPIPB11	MULTI-SECPEP	A375_MHC_IP_R2	2	437.63720703125	3	438.233815	1311.67962	-0.75447	-0.00033063	-0.80577	-0.00035311	-1.5602	-0.00068375	438.23341419874373	25.559	0.50725	26.219	25.992	26.5	0.65992					16	9	2	0	0	0	0.98968	1	8601	8601		9.7643	0	1	8307400	+		43122	22862	31605	31859	42061	42061					0.03624329637682422
RHHIRRLRLLY	11	Unmodified	_RHHIRRLRLLY_					0	0	0			REV__ENSG00000198018|ENST00000370489|ENTPD7	REV__ENSG00000198018|ENST00000370489|ENTPD7	MSMS	A375_MHC_IP_R1	1	766.87158203125	2	766.973485	1531.93242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.86	1	147.86	147.36	148.36	0								0	0	0	0.1636	1	56478	56478		0	0	1		+		43123	22336	31606	31860	42062	42062					0.18772807158802607
RHHRRGRKWL	10	Unmodified	_RHHRRGRKWL_					0	0	0		ENST00000264649.10_1_17:40635081-40635123:+|nuORF	ENST00000264649.10_1_17:40635081-40635123:+|nuORF	ENST00000264649.10_1_17:40635081-40635123:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	701.813232421875	2	701.413595	1400.81264	-0.52142	-0.00036573	-0.088824	-6.2302E-05	-0.61025	-0.00042804	701.4133449373993	143.13	0.85851	143.17	142.69	143.54	0.030731					60	16	5	0	0	0	0.72645	1	55840	55840		0.45834	0.057624	1	34150000			43124	10337	31607	31861	42063	42063					0.12826238604884566
RHHRRGRKWL	10	Unmodified	_RHHRRGRKWL_					0	0	0		ENST00000264649.10_1_17:40635081-40635123:+|nuORF	ENST00000264649.10_1_17:40635081-40635123:+|nuORF	ENST00000264649.10_1_17:40635081-40635123:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	701.413595	1400.81264	-0.96348	-0.0006758	0.30559	0.00021435	-0.65789	-0.00046145	701.4136429251754	143.12	1.0958	143.12	142.59	143.68	0	-0.024889	0.00020438	NaN	0.45834	69	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32804000			43125	10337	31607	31861							0.12826238604884566
RHHRRLLTPAF	11	Unmodified	_RHHRRLLTPAF_					0	0	0		ENSG00000186526|ENST00000612078|CYP4F8	ENSG00000186526|ENST00000612078|CYP4F8	ENSG00000186526|ENST00000612078|CYP4F8	MULTI-MSMS	A375_MHC_IP_R2	2	469.0082702636719	3	468.609216	1402.80582	-0.93529	-0.00043828	-0.7275	-0.00034091	-1.6628	-0.0007792	468.6088807696568	20.021	0.30301	20.631	20.449	20.752	0.61029					9	5	2	0	0	0	0.73459	1	6226	6226		2.084	0.75432	1	2202000			43126	8758	31608	31862	42064	42064					0.12052880933651977
RHKKKKKKKKK	11	Unmodified	_RHKKKKKKKKK_					0	0	0			REV__ENSG00000164609|ENST00000297151|SLU7	REV__ENSG00000164609|ENST00000297151|SLU7	MSMS	A375_MHC_IP_R1	1	733.018798828125	2	733.019904	1464.02525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.16	1	117.16	116.66	117.66	0								0	0	0	0.1636	1	42997	42997		0	0	1		+		43127	20502	31609	31863	42065	42065					0.31180311892126156
RHKLKKKEKE	10	Unmodified	_RHKLKKKEKE_					0	0	0		nc|ENSG00000146067|Q96PV7-2|FAM193B;ENST00000510479.5_1_5:176948978-176959043:-|nuORF;nc|ENSG00000146067|Q96PV7|FAM193B	nc|ENSG00000146067|Q96PV7-2|FAM193B	nc|ENSG00000146067|Q96PV7-2|FAM193B	MSMS	A375_MHC_IP_R2	2	662.8136596679688	2	662.414603	1322.81465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.9	1	144.93	144.43	145.43	0.021408								0	0	0	0.15629	1	56588	56588		0.40072	0	1				43128	12898	31610	31864	42066	42066					0.1661580977943231
RHLERERRKNY	11	Unmodified	_RHLERERRKNY_					0	0	0			REV__ENST00000537569.1_1_12:118597941-118599673:-|nuORF	REV__ENST00000537569.1_1_12:118597941-118599673:-|nuORF	MSMS	A375_MHC_IP_R1	1	519.6362915039062	3	519.622073	1555.84439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.212	1	34.212	33.712	34.712	0								0	0	0	0.16336	1	11252	11252		1.2148	0	1		+		43129	18822	31611	31865	42067	42067					0.08870141777515528
RHLFEPRGPGL	11	Unmodified	_RHLFEPRGPGL_					0	0	0			REV__ENST00000425673.5_1_19:39903285-39903747:+|nuORF	REV__ENST00000425673.5_1_19:39903285-39903747:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	640.2554321289062	2	639.856921	1277.69929	-0.81632	-0.00052233	-1.7741	-0.0011351	-2.5904	-0.0016575	640.3571274225201	86.5	0.55647	86.5	86.274	86.831	0					21	10	3	0	0	0	0.86796	1	31760	31760		20.415	5.1661	1	3574500	+		43130	24637	31612	31866	42068	42068					0.0715470564844054
RHLHKRPI	8	Unmodified	_RHLHKRPI_					0	0	0			REV__ENSG00000140675|ENST00000330498|SLC5A2	REV__ENSG00000140675|ENST00000330498|SLC5A2	MULTI-SECPEP	A375_MHC_IP_R1	1	352.6009521484375	3	352.889432	1055.64647	-0.20735	-7.3173E-05	0.79606	0.00028092	0.5887	0.00020775	352.88956094756645	25.617	0.76231	25.617	25.204	25.966	0					28	14	4	0	0	0	0.93777	1	7616	7616		17.113	4.0704	1	5534400	+		43131	19226	31613	31867	42069	42069					0.12086792376317135
RHLHKRPI	8	Unmodified	_RHLHKRPI_					0	0	0			REV__ENSG00000140675|ENST00000330498|SLC5A2	REV__ENSG00000140675|ENST00000330498|SLC5A2	MULTI-MSMS	A375_MHC_IP_R2	2	353.28985595703125	3	352.889432	1055.64647	-0.62904	-0.00022198	1.0614	0.00037454	0.43232	0.00015256	352.8897313851088	24.823	0.6097	25.467	25.263	25.873	0.64368					28	11	4	0	0	0	0.77374	1	8269	8269		13.906	3.1065	1	3409000	+		43132	19226	31613	31867	42070	42070					0.12086792376317135
RHLRKRFPKGE	11	Unmodified	_RHLRKRFPKGE_					0	0	0			REV__RSF1|p.S1296F|1|0.54|ENSG00000048649|chr11:77667356-77667356|G/A|missense_variant	REV__RSF1|p.S1296F|1|0.54|ENSG00000048649|chr11:77667356-77667356|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	712.49072265625	2	712.423294	1422.83203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.555	1	25.555	25.055	26.055	0								0	0	0	0.16358	1	7475	7475		0.30703	0.30703	1		+		43133	27901	31614	31868	42071	42071					0.13753150105071654
RHLSGGKG	8	Unmodified	_RHLSGGKG_					0	0	0			REV__ENST00000317506.7_1_16:67758723-67758927:-|nuORF	REV__ENST00000317506.7_1_16:67758723-67758927:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	406.63031005859375	2	406.230294	810.446034	-0.30267	-0.00012295	0.48296	0.00019619	0.18029	7.324E-05	406.23040845952806	99.433	2.4848	99.433	97.44	99.925	0					96	48	3	0	0	0	0.77797	1	36458	36458		2.3027	0	1	4611700	+		43134	23546	31615	31869	42072	42072					0.03322897988857676
RHLSGGKG	8	Unmodified	_RHLSGGKG_					0	0	0			REV__ENST00000317506.7_1_16:67758723-67758927:-|nuORF	REV__ENST00000317506.7_1_16:67758723-67758927:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	406.63043212890625	2	406.230294	810.446034	0.047423	1.9265E-05	0.17439	7.0844E-05	0.22182	9.0109E-05	406.2302830562174	98.91	2.843	99.669	97.271	100.11	0.75977					77	55	2	0	0	0	0.77797	1	37436	37436		2.3027	0	1	4052400	+		43135	23546	31615	31869	42073	42073					0.03322897988857676
RHLTHRPV	8	Unmodified	_RHLTHRPV_					0	0	0		ENST00000361786.6_1_14:77564653-77564701:+|nuORF	ENST00000361786.6_1_14:77564653-77564701:+|nuORF	ENST00000361786.6_1_14:77564653-77564701:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	508.69830322265625	2	508.299042	1014.58353	-0.71285	-0.00036234	-0.96214	-0.00048906	-1.675	-0.0008514	508.2986200078931	136.77	0.30742	136.77	136.61	136.92	0					11	5	3	0	0	0	0.77804	1	52683	52683		2.0598	0	1	1334000			43136	11050	31616	31870	42074	42074					0.07682226588269714
RHLTHRPV	8	Unmodified	_RHLTHRPV_					0	0	0		ENST00000361786.6_1_14:77564653-77564701:+|nuORF	ENST00000361786.6_1_14:77564653-77564701:+|nuORF	ENST00000361786.6_1_14:77564653-77564701:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	508.299042	1014.58353	-0.57157	-0.00029053	-1.1144	-0.00056646	-1.686	-0.00085699	508.29865802195616	136.67	0.51724	136.79	136.6	137.12	0.11134	0.008236	-8.0369E-05	NaN	2.0598	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1587700			43137	11050	31616	31870							0.07682226588269714
RHLYKQRRRRY	11	Unmodified	_RHLYKQRRRRY_					0	0	0		nc|ENSG00000074696|Q9P035-2|HACD3;ENSG00000074696|ENST00000261875|HACD3	nc|ENSG00000074696|Q9P035-2|HACD3	nc|ENSG00000074696|Q9P035-2|HACD3	MSMS	A375_MHC_IP_R1	1	544.7153930664062	3	544.653708	1630.93929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.35	1	91.35	90.85	91.85	0								0	0	0	0.1635	1	33564	33564		0.50596	0.09769	1				43138	1591	31617	31871	42075	42075					0.14906120039336201
RHMRGFRREL	10	Unmodified	_RHMRGFRREL_					0	0	0			REV__nc|ENSG00000235217|Q9H489|TSPY26P	REV__nc|ENSG00000235217|Q9H489|TSPY26P	MSMS	A375_MHC_IP_R2	2	679.4382934570312	2	679.372746	1356.73094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.706	1	12.204	11.704	12.704	0.49811								0	0	0	0.15642	1	3622	3622		0	0	1		+		43139	25182	31618	31872	42076	42076					0.06684375130794251
RHNAAAAL	8	Unmodified	_RHNAAAAL_					0	0	0			REV__ENSG00000167136|ENST00000372642|ENDOG	REV__ENSG00000167136|ENST00000372642|ENDOG	MULTI-MSMS	A375_MHC_IP_R1	1	412.62994384765625	2	412.230294	822.446034	0.23648	9.7485E-05	0.48394	0.0001995	0.72042	0.00029698	412.2302820301609	104.76	5.3454	104.76	102.76	108.1	0					222	104	4	0	0	0	0.77797	1	38688	38688		2.3027	0	1	16314000	+		43140	20737	31619	31873	42077	42077					0.027708979888302565
RHPGFDDLM	9	Unmodified	_RHPGFDDLM_					0	0	0			REV__ENSG00000126088|ENST00000246337|UROD	REV__ENSG00000126088|ENST00000246337|UROD	MULTI-MSMS	A375_MHC_IP_R1	1	543.666748046875	2	544.253108	1086.49166	-0.56286	-0.00030634	-2.6494	-0.0014419	-3.2122	-0.0017483	544.7544795598094	57.739	0.71144	57.739	57.263	57.974	0					29	13	3	0	0	0	0.38603	1	20786	20786		25.399	3.6527	1	4733100	+		43141	18379	31620	31874	42078	42078					-0.048122446110937744
RHPKRRFRRRH	11	Unmodified	_RHPKRRFRRRH_					0	0	0			REV__nc|ENSG00000241127|Q9NRH1-2|YAE1	REV__nc|ENSG00000241127|Q9NRH1-2|YAE1	MULTI-MSMS	A375_MHC_IP_R1	1	801.8828125	2	801.482874	1600.9512	-0.77232	-0.000619	0.46682	0.00037415	-0.3055	-0.00024485	801.4828527843499	148.73	1.5459	148.73	147.87	149.41	0					104	32	4	0	0	0	0.73934	3	56623	56623;56834;56961		0	0	1	559800	+		43142	27518	31621	31875	42079;42080;42081	42079					0.17475781573170934
RHPKRRFRRRH	11	Unmodified	_RHPKRRFRRRH_					0	0	0			REV__nc|ENSG00000241127|Q9NRH1-2|YAE1	REV__nc|ENSG00000241127|Q9NRH1-2|YAE1	MULTI-SECPEP	A375_MHC_IP_R1	1	801.8823852539062	2	801.482874	1600.9512	-0.77232	-0.000619	0.46682	0.00037415	-0.3055	-0.00024485	801.4828527843499	148.73	1.5459	148.73	147.87	149.41	0					104	32	4	0	0	0	1.0015	1	56834	56834		0	0	1	559800	+		43143	27518	31621	31875	42082	42082					0.17475781573170934
RHPKRRFRRRH	11	Unmodified	_RHPKRRFRRRH_					0	0	0			REV__nc|ENSG00000241127|Q9NRH1-2|YAE1	REV__nc|ENSG00000241127|Q9NRH1-2|YAE1	MULTI-MSMS	A375_MHC_IP_R2	2	535.05712890625	3	534.657675	1600.9512	-0.60589	-0.00032394	-0.088937	-4.7551E-05	-0.69482	-0.00037149	534.6575192594339	148.82	2.5238	148.84	147.48	150.01	0.018707					186	111	3	0	0	0	0.73934	1	57578	57578		0	0	1	521920	+		43144	27518	31621	31875	42083	42083					0.17475781573170934
RHPKRRFRRRH	11	Unmodified	_RHPKRRFRRRH_					0	0	0			REV__nc|ENSG00000241127|Q9NRH1-2|YAE1	REV__nc|ENSG00000241127|Q9NRH1-2|YAE1	MULTI-MSMS	A375_MHC_IP_R2	2	802.3836059570312	2	801.482874	1600.9512	-0.7239	-0.0005802	0.54359	0.00043567	-0.18032	-0.00014452	801.4828789234091	148.85	1.6342	148.86	147.92	149.56	0.018707					105	38	4	0	0	0	0.73934	3	57606	57606;57805;57916		0	0	1	567000	+		43145	27518	31621	31875	42084;42085;42086	42084					0.17475781573170934
RHPKRRFRRRH	11	Unmodified	_RHPKRRFRRRH_					0	0	0			REV__nc|ENSG00000241127|Q9NRH1-2|YAE1	REV__nc|ENSG00000241127|Q9NRH1-2|YAE1	MULTI-SECPEP	A375_MHC_IP_R2	2	800.9269409179688	2	801.482874	1600.9512	-0.7239	-0.0005802	0.54359	0.00043567	-0.18032	-0.00014452	801.4828789234091	148.85	1.6342	148.86	147.92	149.56	0.018707					105	38	4	0	0	0	1.0015	1	57901	57901		0	0	1	567000	+		43146	27518	31621	31875	42087	42087					0.17475781573170934
RHPRTRWKNWW	11	Unmodified	_RHPRTRWKNWW_					0	0	0		ENST00000467923.5_1_20:5107766-5163790:+|nuORF;nc|ENSG00000101290|O95674-2|CDS2	ENST00000467923.5_1_20:5107766-5163790:+|nuORF	ENST00000467923.5_1_20:5107766-5163790:+|nuORF	MSMS	A375_MHC_IP_R1	1	541.6738891601562	3	541.623637	1621.84908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.048	1	91.048	90.548	91.548	0								0	0	0	0.16351	1	33455	33455		0.45452	0	1				43147	12291	31622	31876	42088	42088					0.06303070710941938
RHRCLPIWFTF	11	Unmodified	_RHRCLPIWFTF_					0	0	0			REV__ENSG00000204702|ENST00000641659|OR2J1	REV__ENSG00000204702|ENST00000641659|OR2J1	MSMS	A375_MHC_IP_R1	1	492.6266784667969	3	492.595808	1474.76559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.522	1	83.522	83.022	84.022	0								0	0	0	0.16269	1	30563	30563		4.7159	0.30977	1		+		43148	22537	31623	31877	42089	42089					0.04720198218842597
RHRDGVHWDQH	11	Unmodified	_RHRDGVHWDQH_					0	0	0		nc|ENSG00000132635|Q9H1Q7-3|PCED1A;nc|ENSG00000132635|Q9H1Q7-2|PCED1A;ENSG00000132635|ENST00000360652|PCED1A	nc|ENSG00000132635|Q9H1Q7-3|PCED1A	nc|ENSG00000132635|Q9H1Q7-3|PCED1A	MSMS	A375_MHC_IP_R2	2	721.82080078125	2	721.842865	1441.67118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.45	1	138.54	138.04	139.04	0.083969								0	0	0	0.16312	1	54292	54292		2.4985	0	1				43149	4430	31624	31878	42090	42090					-0.031992242789328884
RHRINHQRY	9	Unmodified	_RHRINHQRY_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	A375_MHC_IP_R1	1	426.639892578125	3	427.234149	1278.68062	0.37504	0.00016023	1.1119	0.00047506	1.487	0.00063529	427.5690723249274	49.089	0.55542	49.089	48.78	49.336	0					17	10	2	0	0	0	0.74169	1	17405	17405		16.149	7.1729	1	1261500			43150	9326	31625	31879	42091	42091					0.05242588797273129
RHRKPRFSRRK	11	Unmodified	_RHRKPRFSRRK_					0	0	0		ENST00000522193.1_1_7:27153570-27161591:+|nuORF;ENST00000517635.2_1_7:27155632-27161591:+|nuORF	ENST00000522193.1_1_7:27153570-27161591:+|nuORF	ENST00000522193.1_1_7:27153570-27161591:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	509.380126953125	3	508.646664	1522.91816	-0.55235	-0.00028095	-0.37258	-0.00018951	-0.92493	-0.00047046	508.6464182164421	143.18	0.4025	143.22	142.94	143.34	0.030731					13	7	2	0	0	0	1.0015	1	55981	55981		0.094841	0.094841	1	1456700			43151	12963	31626	31880	42092	42092					0.17762154730462498
RHRKPRFSRRK	11	Unmodified	_RHRKPRFSRRK_					0	0	0		ENST00000522193.1_1_7:27153570-27161591:+|nuORF;ENST00000517635.2_1_7:27155632-27161591:+|nuORF	ENST00000522193.1_1_7:27153570-27161591:+|nuORF	ENST00000522193.1_1_7:27153570-27161591:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	508.646664	1522.91816	-0.76922	-0.00039126	-0.14982	-7.6204E-05	-0.91904	-0.00046747	508.98091142436635	143.11	0.40237	143.11	142.84	143.24	0	-0.050351	0.00016811	NaN	0.094841	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1255000			43152	12963	31626	31880							0.17762154730462498
RHRKRVGDP	9	Unmodified	_RHRKRVGDP_					0	0	0			REV__ENST00000487064.1_1_19:33832314-33832719:+|nuORF	REV__ENST00000487064.1_1_19:33832314-33832719:+|nuORF	MSMS	A375_MHC_IP_R1	1	560.8614501953125	2	560.825955	1119.63736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.002	1	95.002	94.502	95.502	0								0	0	0	0.15486	1	34918	34918		10.824	2.9138	1		+		43153	25329	31627	31881	42093	42093					0.08232399019993863
RHRLRFKN	8	Unmodified	_RHRLRFKN_					0	0	0		ENST00000568398.1_1_16:66914465-66918155:+|nuORF	ENST00000568398.1_1_16:66914465-66918155:+|nuORF	ENST00000568398.1_1_16:66914465-66918155:+|nuORF	MSMS	A375_MHC_IP_R2	2	563.7388916015625	2	563.838865	1125.66318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.22	1	145.24	144.74	145.74	0.021408								0	0	0	0.16876	1	56703	56703		0.69038	0	1				43154	13578	31628	31882	42094	42094					0.10537293262268577
RHRRSRRRSHR	11	Unmodified	_RHRRSRRRSHR_					0	0	0			REV__ZNF646|p.Y1540Sfs*8|1|0.42|ENSG00000167395|chr16:31080943-31080943|A/-|frameshift_variant	REV__ZNF646|p.Y1540Sfs*8|1|0.42|ENSG00000167395|chr16:31080943-31080943|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	520.2059326171875	3	520.640684	1558.90022	-0.8647	-0.0004502	2.2001	0.0011455	1.3354	0.00069527	520.6423944594329	143.14	0.70689	143.14	142.64	143.34	0					24	13	3	0	0	0	1.0014	1	54784	54784		0.50596	0	1	1357000	+		43155	20756	31629	31883	42095	42095					0.14312832528344188
RHRSRRRKRP	10	Unmodified	_RHRSRRRKRP_					0	0	0			REV__chr19:45145260-45145338|187|11.94|0.0|20.19|+|1|PPP1R37,None|1	REV__chr19:45145260-45145338|187|11.94|0.0|20.19|+|1|PPP1R37,None|1	MULTI-MSMS	A375_MHC_IP_R1	1	469.35931396484375	3	468.959242	1403.8559	-0.57373	-0.00026905	0.030273	1.4197E-05	-0.54345	-0.00025486	468.9592198343315	132.38	0.96329	132.38	131.98	132.95	0					41	18	3	0	0	0	0.72712	1	51014	51014		0.15932	0	1	5819900	+		43156	15731	31630	31884	42096	42096					0.17012428382145117
RHRSRRRKRP	10	Unmodified	_RHRSRRRKRP_					0	0	0			REV__chr19:45145260-45145338|187|11.94|0.0|20.19|+|1|PPP1R37,None|1	REV__chr19:45145260-45145338|187|11.94|0.0|20.19|+|1|PPP1R37,None|1	MULTI-MSMS	A375_MHC_IP_R2	2	469.35919189453125	3	468.959242	1403.8559	-0.57095	-0.00026775	-0.078612	-3.6866E-05	-0.64956	-0.00030462	468.95916912048386	132.24	1.068	132.43	132	133.07	0.18954					41	20	3	0	0	0	0.72712	1	52014	52014		0.15932	0	1	4191700	+		43157	15731	31630	31884	42097	42097					0.17012428382145117
RHRVFFVY	8	Unmodified	_RHRVFFVY_					0	0	0		ENSG00000166479|ENST00000299608|TMX3;ENST00000569053.5_1_18:66357168-66367709:-|nuORF;ENST00000580785.1_1_18:66365045-66365237:-|nuORF;nc|ENSG00000166479|Q96JJ7-2|TMX3	ENSG00000166479|ENST00000299608|TMX3	ENSG00000166479|ENST00000299608|TMX3	MULTI-MSMS	A375_MHC_IP_R1	1	562.7113647460938	2	562.311618	1122.60868	-0.3153	-0.00017729	-0.34477	-0.00019387	-0.66006	-0.00037116	562.3106926000398	105.84	0.55824	105.84	105.55	106.11	0					18	10	3	0	0	0	0.75322	1	38898	38898		19.439	4.6007	1	2360100			43158	7080	31631	31885	42098	42098					0.05228281390850498
RHRVWFRVLLW	11	Unmodified	_RHRVWFRVLLW_					0	0	0		ENST00000466933.1_1_20:60758097-60768815:+|nuORF	ENST00000466933.1_1_20:60758097-60768815:+|nuORF	ENST00000466933.1_1_20:60758097-60768815:+|nuORF	MSMS	A375_MHC_IP_R2	2	784.4599609375	2	784.459679	1566.90481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.52	1	109.27	108.77	109.77	0.75099								0	0	0	0.1636	1	40973	40973		0	0	1				43159	12268	31632	31886	42099	42099					0.14402903898553632
RHTRLLYKRKI	11	Unmodified	_RHTRLLYKRKI_					0	0	0		ENST00000539644.5_1_12:124496164-124496395:+|nuORF	ENST00000539644.5_1_12:124496164-124496395:+|nuORF	ENST00000539644.5_1_12:124496164-124496395:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	742.86865234375	2	742.470244	1482.92593	-0.87645	-0.00065074	-0.95767	-0.00071104	-1.8341	-0.0013618	742.4692553311222	129.84	0.40526	130.05	129.89	130.3	0.2142					14	7	3	0	0	0	0.73906	1	51026	51026		0.26902	0	1	9401700			43160	13263	31633	31887	42100	42100					0.2037886920738856
RHTSFCHAVK	10	Unmodified	_RHTSFCHAVK_					0	0	0			REV__ENST00000530248.2_1_8:10966093-10966243:-|nuORF	REV__ENST00000530248.2_1_8:10966093-10966243:-|nuORF	MSMS	A375_MHC_IP_R1	1	395.824951171875	3	395.869708	1184.5873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.14	1	19.14	18.64	19.64	0								0	0	0	0.15631	1	4610	4610		0.12286	0	1		+		43161	25836	31634	31888	42101	42101					0.0023852829979205126
RHVEPIRSQ	9	Unmodified	_RHVEPIRSQ_					0	0	0			REV__ENST00000361436.9_1_9:130213061-130213654:-|nuORF	REV__ENST00000361436.9_1_9:130213061-130213654:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	374.60552978515625	3	374.54399	1120.61014	0.38772	0.00014522	1.3482	0.00050495	1.7359	0.00065017	374.5443092690541	39.337	0.96384	39.337	38.933	39.896	0					38	18	4	0	0	0	0.51106	1	13306	13306		13.615	2.8154	1	9974400	+		43162	23912	31635	31889	42102	42102					0.05465870688931318
RHVLWRFLREY	11	Unmodified	_RHVLWRFLREY_					0	0	0			REV__nc|ENSG00000133026|P35580|MYH10	REV__nc|ENSG00000133026|P35580|MYH10	MSMS	A375_MHC_IP_R1	1	525.6608276367188	3	525.628276	1573.863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.487	1	34.487	33.987	34.987	0								0	0	0	0.16336	1	11372	11372		1.2148	0.76031	1		+		43163	18699	31636	31890	42103	42103					0.09902303419380587
RHVRKLKLDWI	11	Unmodified	_RHVRKLKLDWI_					0	0	0			REV__NEDD1|p.S108L|1|0.33|ENSG00000139350|chr12:96917712-96917712|C/T|missense_variant	REV__NEDD1|p.S108L|1|0.33|ENSG00000139350|chr12:96917712-96917712|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	732.3694458007812	2	732.45152	1462.88849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.04	1	117.7	117.2	118.2	0.65962								0	0	0	0.16249	1	44273	44273		5.7319	2.9967	1		+		43164	27589	31637	31891	42104	42104					0.1755577794178862
RHWGATETL	9	Unmodified	_RHWGATETL_					0	0	0		ENST00000478486.5_1_6:31940188-31947331:+|nuORF;ENST00000479644.1_1_6:31939773-31940810:+|nuORF	ENST00000478486.5_1_6:31940188-31947331:+|nuORF	ENST00000478486.5_1_6:31940188-31947331:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	535.1818237304688	2	535.772522	1069.53049	-0.48452	-0.00025959	-0.33788	-0.00018103	-0.8224	-0.00044062	535.772395461295	35.702	0.40965	35.702	35.472	35.881	0					11	7	2	0	0	0	0.62767	1	11856	11856		11.64	0	1	2487700			43165	12464	31638	31892	42105	42105					-0.0014919598504548048
RHYFTLQQRVR	11	Unmodified	_RHYFTLQQRVR_					0	0	0			REV__ZFP82|p.H188Y|1|0.27|ENSG00000181007|chr19:36393778-36393778|G/A|missense_variant	REV__ZFP82|p.H188Y|1|0.27|ENSG00000181007|chr19:36393778-36393778|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	752.3966064453125	2	752.418208	1502.82186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.16	1	104.92	104.42	105.42	0.76308								0	0	0	0.16265	1	39417	39417		4.897	0.36815	1		+		43166	29020	31639	31893	42106	42106					0.09056542379858001
RHYSFIGMC	9	Unmodified	_RHYSFIGMC_					0	0	0		OTOGL|p.Q1836Sfs*45|1|0.64|ENSG00000165899|chr12:80353484-80353484|C/-|frameshift_variant;ENSG00000165899|ENST00000547103|OTOGL	OTOGL|p.Q1836Sfs*45|1|0.64|ENSG00000165899|chr12:80353484-80353484|C/-|frameshift_variant	OTOGL|p.Q1836Sfs*45|1|0.64|ENSG00000165899|chr12:80353484-80353484|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	557.6516723632812	2	557.252054	1112.48956	-1.1726	-0.00065346	-0.56005	-0.00031209	-1.7327	-0.00096555	557.2516358116592	59.313	0.45536	60.06	59.793	60.249	0.74714					12	6	2	0	0	0	0.65721	1	22477	22477		10.824	1.4408	1	2290800			43167	7000	31640	31894	42107	42107					-0.062189966205096425
RIAAPRDG	8	Unmodified	_RIAAPRDG_					0	0	0		ENST00000448276.6_1_17:61919994-61920252:-|nuORF	ENST00000448276.6_1_17:61919994-61920252:-|nuORF	ENST00000448276.6_1_17:61919994-61920252:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	428.6434326171875	2	428.243401	854.472249	-0.15688	-6.7185E-05	-0.1437	-6.1538E-05	-0.30058	-0.00012872	428.24326194145647	104.43	2.9492	105.19	103.07	106.02	0.76308					133	57	3	0	0	0	0.77797	1	39583	39583		2.3027	0	1	7316400			43168	12050	31641	31895	42108	42108					0.039191671603248324
RIAETISL	8	Unmodified	_RIAETISL_					0	0	0			REV__ENST00000535414.5_1_1:101354327-101354378:-|nuORF	REV__ENST00000535414.5_1_1:101354327-101354378:-|nuORF	MSMS	A375_MHC_IP_R1	1	451.66827392578125	2	451.768917	901.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.66	1	144.66	144.16	145.16	0								0	0	0	0.16876	1	55470	55470		2.3027	0	1		+		43169	25900	31642	31896	42109	42109					0.06858071414524147
RIAGIRGIQGV	11	Unmodified	_RIAGIRGIQGV_					0	0	0		nc|ENSG00000132294|Q14156-3|EFR3A;nc|ENSG00000132294|Q14156-2|EFR3A;ENSG00000132294|ENST00000254624|EFR3A	nc|ENSG00000132294|Q14156-3|EFR3A	nc|ENSG00000132294|Q14156-3|EFR3A	MULTI-MSMS	A375_MHC_IP_R1	1	380.3013000488281	3	380.571768	1138.69348	0.66856	0.00025444	-0.65158	-0.00024797	0.016984	6.4635E-06	380.57144186391616	45.415	0.55493	45.415	45.132	45.687	0					27	10	4	0	0	0	0.41543	2	15880	15854;15880		37.771	24.899	1	8760100			43170	4387	31643	31897	42110;42111	42111					0.12967607136783954
RIAGIRGIQGV	11	Unmodified	_RIAGIRGIQGV_					0	0	0		nc|ENSG00000132294|Q14156-3|EFR3A;nc|ENSG00000132294|Q14156-2|EFR3A;ENSG00000132294|ENST00000254624|EFR3A	nc|ENSG00000132294|Q14156-3|EFR3A	nc|ENSG00000132294|Q14156-3|EFR3A	MULTI-SECPEP	A375_MHC_IP_R2	2	380.97161865234375	3	380.571768	1138.69348	0.0072953	2.7764E-06	-0.59453	-0.00022626	-0.58723	-0.00022348	380.5715026913087	44.432	0.45599	45.201	44.934	45.39	0.76909					19	8	3	0	0	0	0.47868	1	16568	16568		53.47	36.421	1	6587700			43171	4387	31643	31897	42112	42112					0.12967607136783954
RIAKMPVKW	9	Unmodified	_RIAKMPVKW_					0	0	0		nc|ENSG00000167601|P30530-2|AXL;ENSG00000167601|ENST00000301178|AXL;ENSG00000153208|ENST00000295408|MERTK	nc|ENSG00000167601|P30530-2|AXL	nc|ENSG00000167601|P30530-2|AXL	MULTI-SECPEP	A375_MHC_IP_R2	2	377.62957763671875	3	376.895195	1127.66375	0.091448	3.4466E-05	0.13731	5.1752E-05	0.22876	8.6218E-05	377.2296043008455	40.559	0.40685	41.334	41.133	41.54	0.77451					12	7	2	0	0	0	0.77003	1	15049	15049		7.609	7.609	1	3681000			43172	7198	31644	31898	42113	42113					0.10502951867124466
RIAKMPVKW	9	Unmodified	_RIAKMPVKW_					0	0	0		nc|ENSG00000167601|P30530-2|AXL;ENSG00000167601|ENST00000301178|AXL;ENSG00000153208|ENST00000295408|MERTK	nc|ENSG00000167601|P30530-2|AXL	nc|ENSG00000167601|P30530-2|AXL	MULTI-MATCH	A375_MHC_IP_R1	1		3	376.895195	1127.66375	0.028641	1.0795E-05	0.62152	0.00023425	0.65016	0.00024504	376.8953317107779	41.672	0.25555	41.672	41.47	41.725	0	0.16885	0.00035786	NaN	7.609	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1845800			43173	7198	31644	31898							0.10502951867124466
RIALPKPRN	9	Unmodified	_RIALPKPRN_					0	0	0		ENSG00000083168|ENST00000265713|KAT6A	ENSG00000083168|ENST00000265713|KAT6A	ENSG00000083168|ENST00000265713|KAT6A	MSMS	A375_MHC_IP_R2	2	355.46002197265625	3	355.561092	1063.66145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.571	1	40.346	39.846	40.846	0.77451								0	0	0	0.15486	1	14618	14618		7.609	0	1				43174	1772	31645	31899	42114	42114					0.13216239453663547
RIAYEVRDI	9	Unmodified	_RIAYEVRDI_					0	0	0		ENST00000473492.1_1_13:41791330-41800639:-|nuORF;ENSG00000120662|ENST00000379480|MTRF1;nc|ENSG00000120662|O75570-2|MTRF1	ENST00000473492.1_1_13:41791330-41800639:-|nuORF	ENST00000473492.1_1_13:41791330-41800639:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	378.2646484375	3	378.880379	1133.61931	0.25498	9.6607E-05	4.3948	0.0016651	4.6498	0.0017617	378.88030029924937	52.604	0.60988	52.604	52.287	52.897	0					33	11	5	0	0	0	0.7713	1	18740	18740		12.175	0.65687	1	2630300			43175	3673	31646	31900	42115	42115					0.05784219254610434
RICCIQLRTR	10	Unmodified	_RICCIQLRTR_					0	0	0		ENST00000367590.8_1_1:180601401-180756909:+|nuORF	ENST00000367590.8_1_1:180601401-180756909:+|nuORF	ENST00000367590.8_1_1:180601401-180756909:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	631.2459716796875	2	631.352634	1260.69071	-0.85651	-0.00054076	-1.1335	-0.00071562	-1.99	-0.0012564	631.3523398303561	90.765	1.065	90.765	90.184	91.249	0					36	20	3	0	0	0	0.91773	1	33211	33211		10.8	0	1	6586800			43176	11095	31647	31901	42116	42116					0.07079692415959471
RICKPLFTK	9	Unmodified	_RICKPLFTK_					0	0	0			REV__JAK2|p.E577Sfs*8|1|0.71|ENSG00000096968|chr9:5072578-5072579|AG/-|frameshift_variant	REV__JAK2|p.E577Sfs*8|1|0.71|ENSG00000096968|chr9:5072578-5072579|AG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	369.2889099121094	3	369.2232	1104.64777	-0.081484	-3.0086E-05	0.065036	2.4013E-05	-0.016447	-6.0727E-06	369.22322986731945	58.654	0.66118	59.403	59.237	59.898	0.74894					20	12	3	0	0	0	0.72761	1	22179	22179		4.5289	1.5336	1	2782700	+		43177	17009	31648	31902	42117	42117					0.09963245630183337
RICKTVKKV	9	Unmodified	_RICKTVKKV_					0	0	0		HTR1A|p.R227C|1|0.46|ENSG00000178394|chr5:63961041-63961041|G/A|missense_variant	HTR1A|p.R227C|1|0.46|ENSG00000178394|chr5:63961041-63961041|G/A|missense_variant	HTR1A|p.R227C|1|0.46|ENSG00000178394|chr5:63961041-63961041|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	358.93634033203125	3	358.898716	1073.67432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.705	1	26.365	25.865	26.865	0.65992								0	0	0	0.15486	1	8618	8618		6.1918	2.0023	1				43178	14139	31649	31903	42118	42118					0.14042934521535244
RIDILILFV	9	Unmodified	_RIDILILFV_					0	0	0			REV__ENST00000358582.8_1_19:38159870-38160044:-|nuORF	REV__ENST00000358582.8_1_19:38159870-38160044:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	368.2718505859375	3	367.905865	1100.69577	0.16677	6.1355E-05	1.102	0.00040545	1.2688	0.0004668	368.2412557308123	30.891	0.20236	31.61	31.467	31.669	0.71857					5	3	2	0	0	0	0.60982	1	10905	10905		14.405	8.1996	1	559120	+		43179	23858	31650	31904	42119	42119					0.14944642821910747
RIDITLSSV	9	Unmodified	_RIDITLSSV_					0	0	0		ENSG00000108679|ENST00000262776|LGALS3BP;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENSG00000108679|ENST00000262776|LGALS3BP;ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENSG00000108679|ENST00000262776|LGALS3BP	MULTI-MSMS	A375_MHC_IP_R2	2	502.6816711425781	2	502.292756	1002.57096	-0.63217	-0.00031754	0.15395	7.7326E-05	-0.47823	-0.00024021	502.2926350023116	75.627	0.91644	76.368	76.026	76.943	0.74052					31	17	3	0	0	0	0.050868	1	28723	28723		63.961	6.2385	1	9601100			43180	2829;13730	31651	31905	42120	42120					0.06977725614729025
RIDITLSSV	9	Unmodified	_RIDITLSSV_					0	0	0		ENSG00000108679|ENST00000262776|LGALS3BP;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENSG00000108679|ENST00000262776|LGALS3BP;ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENSG00000108679|ENST00000262776|LGALS3BP	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	502.292756	1002.57096	-0.63217	-0.00031754	0.15395	7.7326E-05	-0.47823	-0.00024021	502.2926350023116	75.627	0.91644	76.368	76.026	76.943	0.74052	-0.039228	7.3063E-07	NaN	63.961	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9601100			43181	2829;13730	31651	31905							0.06977725614729025
RIDPALLTV	9	Unmodified	_RIDPALLTV_					0	0	0		ENSG00000188211|ENST00000338965|NCR3LG1	ENSG00000188211|ENST00000338965|NCR3LG1	ENSG00000188211|ENST00000338965|NCR3LG1	MULTI-SECPEP	A375_MHC_IP_R2	2	499.6878662109375	2	499.305667	996.596781	-0.59973	-0.00029945	0.049963	2.4947E-05	-0.54977	-0.0002745	499.30566682145474	81.944	0.96535	82.687	82.229	83.195	0.74294					38	18	3	0	0	0	0.47674	1	31182	31182		29.841	2.2118	1	7657700			43182	8892	31652	31906	42121	42121					0.09834619856985682
RIDTRNELESY	11	Unmodified	_RIDTRNELESY_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MSMS	A375_MHC_IP_R2	2	466.3001708984375	3	465.900279	1394.67901	-1.0881	-0.00050696	0.55505	0.0002586	-0.53308	-0.00024836	465.9007227798289	34.025	0.3042	34.778	34.6	34.904	0.75225					10	5	3	0	0	0	0.72934	1	12276	12276		9.5301	2.493	1	4890500			43183	1188	31653	31907	42122	42122					-0.002545545926750492
RIDVVLLKPKS	11	Unmodified	_RIDVVLLKPKS_					0	0	0			REV__ENST00000510927.5_1_4:106967729-107168455:-|nuORF	REV__ENST00000510927.5_1_4:106967729-107168455:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	423.6747131347656	3	423.274729	1266.80236	0.3466	0.00014671	-0.37629	-0.00015927	-0.02969	-1.2567E-05	423.274561352527	38.859	0.71202	38.859	38.628	39.34	0					46	13	5	0	0	0	0.28899	1	13201	13201		32.616	8.6523	1	109970000	+		43184	19471	31654	31908	42123	42123					0.17962773316435232
RIDVVLLKPKS	11	Unmodified	_RIDVVLLKPKS_					0	0	0			REV__ENST00000510927.5_1_4:106967729-107168455:-|nuORF	REV__ENST00000510927.5_1_4:106967729-107168455:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	423.674560546875	3	423.274729	1266.80236	-0.33055	-0.00013992	0.0086328	3.654E-06	-0.32192	-0.00013626	423.27471384532737	37.885	1.0197	38.66	38.382	39.401	0.77451					48	19	5	0	0	0	0.38403	2	13862	13862;13893		27.129	12.291	1	81457000	+		43185	19471	31654	31908	42124;42125	42124					0.17962773316435232
RIDVVLLKPKS	11	Unmodified	_RIDVVLLKPKS_					0	0	0			REV__ENST00000510927.5_1_4:106967729-107168455:-|nuORF	REV__ENST00000510927.5_1_4:106967729-107168455:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	423.274729	1266.80236	0.3466	0.00014671	-0.37629	-0.00015927	-0.02969	-1.2567E-05	423.274561352527	38.859	0.71202	38.859	38.628	39.34	0	0.099737	-0.00023631	NaN	32.616	46	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109970000	+		43186	19471	31654	31908							0.17962773316435232
RIDVVLLKPKS	11	Unmodified	_RIDVVLLKPKS_					0	0	0			REV__ENST00000510927.5_1_4:106967729-107168455:-|nuORF	REV__ENST00000510927.5_1_4:106967729-107168455:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	423.274729	1266.80236	-0.33055	-0.00013992	0.0086328	3.654E-06	-0.32192	-0.00013626	423.27471384532737	37.885	1.0197	38.66	38.382	39.401	0.77451	-0.099737	0.00025247	NaN	32.616	48	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81457000	+		43187	19471	31654	31908							0.17962773316435232
RIDWNVNW	8	Unmodified	_RIDWNVNW_					0	0	0			REV__ENSG00000149781|ENST00000345728|FERMT3	REV__ENSG00000149781|ENST00000345728|FERMT3	MULTI-SECPEP	A375_MHC_IP_R1	1	367.63641357421875	3	368.185802	1101.53558	0.31936	0.00011758	-0.33062	-0.00012173	-0.011268	-4.1486E-06	368.1857390916019	31.735	0.20299	31.735	31.616	31.819	0					6	3	2	0	0	0	0.93661	1	10156	10156		12.241	11.376	1	640160	+		43188	19696	31655	31909	42126	42126					-0.011128921224326405
RIDYIITN	8	Unmodified	_RIDYIITN_					0	0	0		tr|U7T2K1|U7T2K1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00479PE=4SV=1	tr|U7T2K1|U7T2K1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00479PE=4SV=1	tr|U7T2K1|U7T2K1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00479PE=4SV=1	MSMS	A375_MHC_IP_R2	2	504.1997985839844	2	504.279649	1006.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.3	1	77.041	76.541	77.541	0.74052								0	0	0	0.16876	1	28967	28967		21.747	1.293	1				43189	29936	31656	31910	42127	42127					0.041734564432204024
RIDYKDKEFDF	11	Unmodified	_RIDYKDKEFDF_					0	0	0			REV__MORC3|p.T465Pfs*17|1|0.18|ENSG00000159256|chr21:36360240-36360240|A/-|frameshift_variant	REV__MORC3|p.T465Pfs*17|1|0.18|ENSG00000159256|chr21:36360240-36360240|A/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	492.6742858886719	3	492.577025	1474.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.335	1	39.335	38.835	39.835	0								0	0	0	0.16258	1	13433	13433		2.4348	0	1		+		43190	20109	31657	31911	42128	42128					-0.009121959275034897
RIEDGKLYY	9	Unmodified	_RIEDGKLYY_					0	0	0		ENSG00000111707|ENST00000543473|SUDS3	ENSG00000111707|ENST00000543473|SUDS3	ENSG00000111707|ENST00000543473|SUDS3	MULTI-SECPEP	A375_MHC_IP_R1	1	579.2035522460938	2	578.803488	1155.59242	-0.19349	-0.00011199	-0.087295	-5.0527E-05	-0.28079	-0.00016252	578.8034284176431	37.096	0.40525	37.096	36.895	37.301	0					16	7	3	0	0	0	0.27114	1	12473	12473		53.404	22.767	1	5309500			43191	3022	31658	31912	42129	42129					0.020851106434292888
RIEDNSLLY	9	Unmodified	_RIEDNSLLY_					0	0	0		nc|ENSG00000174842|Q92990-2|GLMN;ENSG00000174842|ENST00000370360|GLMN	nc|ENSG00000174842|Q92990-2|GLMN	nc|ENSG00000174842|Q92990-2|GLMN	MULTI-SECPEP	A375_MHC_IP_R1	1	562.1932373046875	2	561.793121	1121.57169	-0.43021	-0.00024169	0.21039	0.00011819	-0.21982	-0.00012349	561.7931667934589	59.798	0.50967	59.798	59.599	60.109	0					19	9	3	0	0	0	0.27742	1	21532	21532		43.772	16.144	1	4856400			43192	7908	31659	31913	42130	42130					0.015765202637794573
RIEDNSLLY	9	Unmodified	_RIEDNSLLY_					0	0	0		nc|ENSG00000174842|Q92990-2|GLMN;ENSG00000174842|ENST00000370360|GLMN	nc|ENSG00000174842|Q92990-2|GLMN	nc|ENSG00000174842|Q92990-2|GLMN	MULTI-MATCH	A375_MHC_IP_R2	2		2	561.793121	1121.57169	-0.97399	-0.00054718	-0.3194	-0.00017943	-1.2934	-0.00072661	561.792663648395	58.995	0.40664	59.742	59.54	59.946	0.74714	-0.028104	-0.00042623	NaN	43.772	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2782900			43193	7908	31659	31913							0.015765202637794573
RIEEDNLTY	9	Unmodified	_RIEEDNLTY_					0	0	0		nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123170580-123298708:-|nuORF	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	577.1792602539062	2	576.78021	1151.54587	-0.03548	-2.0464E-05	0.1259	7.2618E-05	0.090423	5.2154E-05	576.7800450424708	42.492	0.40439	42.492	42.285	42.689	0					12	7	2	0	0	0	0.50484	1	14737	14737		34.932	1.4872	1	2550800			43194	4830	31660	31914	42131	42131					-0.023843739785206708
RIEKQFLLY	9	Unmodified	_RIEKQFLLY_					0	0	0		ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	MULTI-SECPEP	A375_MHC_IP_R1	1	605.7532958984375	2	605.353148	1208.69174	-0.30347	-0.00018371	0.10726	6.4932E-05	-0.19621	-0.00011877	605.3531703099433	63.496	1.1197	63.496	63.173	64.292	0					45	21	3	0	0	0	0.1952	1	22919	22919		66.457	2.2204	1	22977000			43195	1333	31661	31915	42132	42132					0.09574553328184265
RIEKQFLLY	9	Unmodified	_RIEKQFLLY_					0	0	0		ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	MULTI-SECPEP	A375_MHC_IP_R2	2	404.30450439453125	3	403.904524	1208.69174	-0.056032	-2.2631E-05	-0.16044	-6.4801E-05	-0.21647	-8.7432E-05	403.9044465914429	62.514	0.55735	63.257	62.976	63.534	0.74263					28	10	4	0	0	0	0.38134	1	23687	23687		46.022	14.754	1	3926800			43196	1333	31661	31915	42133	42133					0.09574553328184265
RIEKQFLLY	9	Unmodified	_RIEKQFLLY_					0	0	0		ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	MULTI-SECPEP	A375_MHC_IP_R2	2	605.6852416992188	2	605.353148	1208.69174	-0.49254	-0.00029816	0.010235	6.196E-06	-0.4823	-0.00029196	605.3531107113225	62.529	0.96194	63.272	62.976	63.938	0.74263					46	18	4	0	0	0	0.29257	1	23698	23698		57.722	0	1	21041000			43197	1333	31661	31915	42134	42134					0.09574553328184265
RIEKRKYW	8	Unmodified	_RIEKRKYW_					0	0	0		nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5;nc|ENSG00000012779|P09917-5|ALOX5;nc|ENSG00000012779|P09917-4|ALOX5	nc|ENSG00000012779|P09917-2|ALOX5	nc|ENSG00000012779|P09917-2|ALOX5	MSMS	A375_MHC_IP_R1	1	393.614501953125	3	393.564614	1177.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.785	1	34.785	34.285	35.285	0								0	0	0	0.16876	1	11500	11500		6.7232	0.53132	1				43198	1012	31662	31916	42135	42135					0.09028222108076989
RIEREIPTEKP	11	Unmodified	_RIEREIPTEKP_					0	0	0			REV__ENSG00000099812|ENST00000215582|MISP	REV__ENSG00000099812|ENST00000215582|MISP	MULTI-MSMS	A375_MHC_IP_R2	2	684.7842407226562	2	684.385708	1366.75686	-0.58556	-0.00040075	-0.59037	-0.00040404	-1.1759	-0.00080479	684.3851063696455	133.17	1.881	133.33	132.84	134.72	0.16487					67	36	4	0	0	0	0.73672	1	52600	52600		2.4985	1.169	1	11258000	+		43199	17023	31663	31917	42136	42136					0.08815503063351571
RIERIRRRWN	10	Unmodified	_RIERIRRRWN_					0	0	0			REV__ENST00000550564.1_1_12:53468877-53473168:-|nuORF	REV__ENST00000550564.1_1_12:53468877-53473168:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	486.0237121582031	3	485.623637	1453.84908	-0.39947	-0.00019399	0.73317	0.00035604	0.3337	0.00016205	485.62396402973536	31.114	0.45527	31.114	30.857	31.312	0					21	8	3	0	0	0	0.7245	1	9938	9938		0.56317	0.10865	1	5308800	+		43200	20794	31664	31918	42137	42137					0.14031070710916538
RIFAPCASL	9	Unmodified	_RIFAPCASL_					0	0	0			REV__USP30|p.W95G|1|0.17|ENSG00000135093|chr12:109058015-109058015|T/G|missense_variant	REV__USP30|p.W95G|1|0.17|ENSG00000135093|chr12:109058015-109058015|T/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	489.9444274902344	2	489.265487	976.516422	-0.6401	-0.00031318	2.5052	0.0012257	1.8651	0.00091251	489.2666650553086	55.544	0.55728	56.295	56.034	56.591	0.75075					17	10	2	0	0	0	0.46038	1	20969	20969		21.747	0.87544	1	1134500	+		43201	18823	31665	31919	42138	42138					0.027224352622852166
RIFIAQPAW	9	Unmodified	_RIFIAQPAW_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13;ENST00000463038.1_1_3:132241830-132242644:+|nuORF	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	A375_MHC_IP_R1	1	551.7137451171875	2	551.313826	1100.6131	-0.72616	-0.00040034	0.33101	0.00018249	-0.39515	-0.00021785	551.3139822699076	90.38	0.60931	90.38	90.032	90.641	0					17	11	2	0	0	0	0.28475	1	33200	33200		48.346	2.3249	1	2602000			43202	4973	31666	31920	42139	42139					0.06681745813739326
RIFPEGSCL	9	Unmodified	_RIFPEGSCL_					0	0	0		nc|ENSG00000066294|Q9UIB8|CD84	nc|ENSG00000066294|Q9UIB8|CD84	nc|ENSG00000066294|Q9UIB8|CD84	MSMS	A375_MHC_IP_R2	2	511.17669677734375	2	511.260402	1020.50625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.285	1	19.888	19.388	20.388	0.60308								0	0	0	0.14905	1	5908	5908		23.148	7.3012	1				43203	14472	31667	31921	42140	42140					-0.003181724629371274
RIFRWTFLKSW	11	Unmodified	_RIFRWTFLKSW_					0	0	0		ENST00000541028.5_1_15:52553308-52587917:-|nuORF	ENST00000541028.5_1_15:52553308-52587917:-|nuORF	ENST00000541028.5_1_15:52553308-52587917:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	513.2948608398438	3	513.957623	1538.85104	-0.46528	-0.00023914	-1.5236	-0.00078304	-1.9888	-0.0010222	514.2912216570566	42.163	0.40409	42.163	41.982	42.386	0					15	7	3	0	0	0	1.0012	1	14654	14654		0.40827	0.041592	1	1150900			43204	13280	31668	31922	42141	42141					0.10316686676151221
RIFSRPKIH	9	Unmodified	_RIFSRPKIH_					0	0	0		ZNF860|p.S196F|1|0.14|ENSG00000197385|chr3:31989666-31989666|C/T|missense_variant	ZNF860|p.S196F|1|0.14|ENSG00000197385|chr3:31989666-31989666|C/T|missense_variant	ZNF860|p.S196F|1|0.14|ENSG00000197385|chr3:31989666-31989666|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	385.63665771484375	3	385.236608	1152.688	0.66132	0.00025477	-0.74768	-0.00028804	-0.086359	-3.3269E-05	385.2362788224641	48.479	0.70865	48.479	48.122	48.831	0					20	13	2	0	0	0	0.60982	1	17145	17145		14.405	3.6059	1	2195500			43205	30252	31669	31923	42142	42142					0.11775928344991371
RIGVIERSL	9	Unmodified	_RIGVIERSL_					0	0	0		tr|U7SED1|U7SED1_FUSNUTranscriptionantiterminationproteinNusBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusBPE=3SV=1	tr|U7SED1|U7SED1_FUSNUTranscriptionantiterminationproteinNusBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusBPE=3SV=1	tr|U7SED1|U7SED1_FUSNUTranscriptionantiterminationproteinNusBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusBPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	522.2213134765625	2	521.822015	1041.62948	-0.51671	-0.00026963	-0.12926	-6.7449E-05	-0.64597	-0.00033708	521.8218965164717	59.27	0.50811	59.27	58.99	59.498	0					20	9	3	0	0	0	0.71341	1	21300	21300		13.042	3.4985	1	5926800			43206	29381	31670	31924	42143	42143					0.11032826979840138
RIHFLENPF	9	Unmodified	_RIHFLENPF_					0	0	0		nc|ENSG00000198556|Q5FWF6-2|ZNF789;ENSG00000198556|ENST00000331410|ZNF789	nc|ENSG00000198556|Q5FWF6-2|ZNF789	nc|ENSG00000198556|Q5FWF6-2|ZNF789	MULTI-MSMS	A375_MHC_IP_R2	2	391.94512939453125	3	391.545219	1171.61383	-0.23902	-9.3585E-05	0.6282	0.00024597	0.38919	0.00015238	391.5451566753284	32.686	0.50882	33.423	33.213	33.722	0.73691					24	9	3	0	0	0	0.50892	1	11665	11665		19.362	1.9193	1	5818900			43207	9282	31671	31925	42144	42144					0.0348854046278575
RIHSIVLV	8	Unmodified	_RIHSIVLV_					0	0	0		CON__Q3T052	CON__Q3T052	CON__Q3T052	MULTI-MSMS	A375_MHC_IP_R1	1	469.2029113769531	2	468.803094	935.591636	-0.35334	-0.00016565	-0.14664	-6.8745E-05	-0.49998	-0.00023439	468.8029987897058	61.411	1.4299	61.411	61.075	62.505	0					58	27	4	0	0	0	0.72008	2	22078	22078;22309		28.487	0	1	112650000		+	43208	620	31672	31926	42145;42146	42145					0.12126360785021006
RIIAKLAAW	9	Unmodified	_RIIAKLAAW_					0	0	0		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-SECPEP	A375_MHC_IP_R1	1	521.7316284179688	2	521.332019	1040.64948	-0.486	-0.00025337	-0.8364	-0.00043604	-1.3224	-0.00068941	521.331779447164	63.737	0.35863	63.737	63.529	63.887	0					10	6	2	0	0	0	0.73363	1	23086	23086		10.824	5.5933	1	1457500			43209	1196	31673	31927	42147	42147					0.13078622710440868
RIIAKLAAW	9	Unmodified	_RIIAKLAAW_					0	0	0		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-SECPEP	A375_MHC_IP_R2	2	521.7314453125	2	521.332019	1040.64948	-0.69214	-0.00036083	-0.10984	-5.7264E-05	-0.80198	-0.0004181	521.3319069805837	62.549	0.45644	63.291	63.028	63.484	0.74263					13	8	2	0	0	0	0.73363	1	23748	23748		6.7232	4.6634	1	1570000			43210	1196	31673	31927	42148	42148					0.13078622710440868
RIIDCAFTV	9	Unmodified	_RIIDCAFTV_					0	0	0		nc|ENSG00000111142|P50579-3|METAP2;ENSG00000111142|ENST00000323666|METAP2;nc|ENSG00000111142|P50579-2|METAP2	nc|ENSG00000111142|P50579-3|METAP2	nc|ENSG00000111142|P50579-3|METAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	519.6754760742188	2	519.276052	1036.53755	-0.6902	-0.00035841	-0.81151	-0.0004214	-1.5017	-0.00077981	519.2756637064656	91.104	0.86107	91.104	90.794	91.655	0					28	16	3	0	0	0	0.63622	1	33494	33494		19.362	4.5237	1	1471100			43211	2966	31674	31928	42149	42149					0.020744005711321734
RIIDCAFTV	9	Unmodified	_RIIDCAFTV_					0	0	0		nc|ENSG00000111142|P50579-3|METAP2;ENSG00000111142|ENST00000323666|METAP2;nc|ENSG00000111142|P50579-2|METAP2	nc|ENSG00000111142|P50579-3|METAP2	nc|ENSG00000111142|P50579-3|METAP2	MULTI-SECPEP	A375_MHC_IP_R2	2	519.6758422851562	2	519.276052	1036.53755	-0.58206	-0.00030225	-0.27039	-0.00014041	-0.85246	-0.00044266	519.2759116790359	90.18	0.86338	90.912	90.597	91.46	0.7318					24	16	2	0	0	0	0.63622	1	34341	34341		19.362	10.769	1	2051700			43212	2966	31674	31928	42150	42150					0.020744005711321734
RIIDKPRVI	9	Unmodified	_RIIDKPRVI_					0	0	0		ENSG00000179918|ENST00000478753|SEPHS2	ENSG00000179918|ENST00000478753|SEPHS2	ENSG00000179918|ENST00000478753|SEPHS2	MULTI-MSMS	A375_MHC_IP_R2	2	370.62939453125	3	370.576631	1108.70806	0.34488	0.0001278	-0.10483	-3.8847E-05	0.24005	8.8957E-05	370.57658135238944	31.907	0.30213	32.643	32.453	32.755	0.73691					12	5	3	0	0	0	0.70902	2	11313	11313;11344		6.1918	4.1058	1	2340400			43213	8264	31675	31929	42151;42152	42151					0.15805679284949292
RIIDKPRVI	9	Unmodified	_RIIDKPRVI_					0	0	0		ENSG00000179918|ENST00000478753|SEPHS2	ENSG00000179918|ENST00000478753|SEPHS2	ENSG00000179918|ENST00000478753|SEPHS2	MULTI-MATCH	A375_MHC_IP_R1	1		3	370.576631	1108.70806	0.11349	4.2056E-05	0.018264	6.7681E-06	0.13175	4.8824E-05	370.910905059194	32.841	0.35469	32.841	32.634	32.989	0	0.098775	0.00011643	NaN	6.1918	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1839600			43214	8264	31675	31929							0.15805679284949292
RIIDVVYNA	9	Unmodified	_RIIDVVYNA_					0	0	0		ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-SECPEP	A375_MHC_IP_R1	1	531.1781616210938	2	531.800749	1061.58694	-0.72417	-0.00038511	0.77055	0.00040978	0.046389	2.467E-05	531.8009555526277	68.567	1.7743	68.567	68.108	69.882	0					92	34	6	0	0	0	0.011405	1	24890	24890		110.67	64.975	1	159900000			43215	5337	31676	31930	42153	42153					0.058614318515992636
RIIDVVYNA	9	Unmodified	_RIIDVVYNA_					0	0	0		ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-SECPEP	A375_MHC_IP_R2	2	532.1644287109375	2	531.800749	1061.58694	-0.62644	-0.00033314	0.41625	0.00022136	-0.21019	-0.00011178	531.8007507346217	67.699	2.1835	68.435	68.001	70.185	0.73631					112	42	5	0	0	0	0.011405	1	25650	25650		110.67	66.816	1	172340000			43216	5337	31676	31930	42154	42154					0.058614318515992636
RIINERHLF	9	Unmodified	_RIINERHLF_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-SECPEP	A375_MHC_IP_R1	1	400.2999572753906	3	399.899885	1196.67783	-0.46277	-0.00018506	0.65125	0.00026043	0.18848	7.5374E-05	399.90010793600237	39.625	0.65854	39.625	39.34	39.999	0					42	12	5	0	0	0	0.078412	1	13538	13538		74.772	56.051	1	18786000			43217	6703	31677	31931	42155	42155					0.08735320619734921
RIINERHLF	9	Unmodified	_RIINERHLF_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-MSMS	A375_MHC_IP_R2	2	400.6117248535156	3	399.899885	1196.67783	-0.42891	-0.00017152	-0.01471	-5.8825E-06	-0.44362	-0.0001774	399.89985168050606	38.457	0.66109	39.231	38.997	39.658	0.77451					37	12	4	0	0	0	0.11448	1	14212	14212		48.073	30.63	1	19613000			43218	6703	31677	31931	42156	42156					0.08735320619734921
RIINNYTKK	9	Unmodified	_RIINNYTKK_					0	0	0			REV__MUC5AC|p.E4652K|2|0.51|ENSG00000215182|chr11:1192099-1192099|G/A|missense_variant	REV__MUC5AC|p.E4652K|2|0.51|ENSG00000215182|chr11:1192099-1192099|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	384.60797119140625	3	383.89614	1148.66659	-0.37459	-0.0001438	0.33069	0.00012695	-0.043901	-1.6853E-05	383.89633340633634	33.264	1.7264	34.016	33.127	34.853	0.75225					96	33	6	0	0	0	0.44183	1	11899	11899		14.405	0	1	249350000	+		43219	27054	31678	31932	42157	42157					0.09820498525596122
RIIYIREQW	9	Unmodified	_RIIYIREQW_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	A375_MHC_IP_R1	1	426.64337158203125	3	426.24354	1275.70879	-0.05983	-2.5502E-05	-0.2133	-9.0919E-05	-0.27313	-0.00011642	426.2434591108763	62.082	0.40894	62.082	61.891	62.3	0					17	7	3	0	0	0	0.068433	1	22413	22413		57.108	35.308	1	3399400			43220	3298	31679	31933	42158	42158					0.08196473933980997
RIIYIREQW	9	Unmodified	_RIIYIREQW_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	A375_MHC_IP_R2	2	426.64300537109375	3	426.24354	1275.70879	-0.48767	-0.00020787	-0.0023654	-1.0082E-06	-0.49004	-0.00020887	426.2434899553189	61.25	0.55424	61.995	61.668	62.223	0.74503					18	10	2	0	0	0	0.032066	1	23199	23199		73.196	47.199	1	3489000			43221	3298	31679	31933	42159	42159					0.08196473933980997
RIKAINTFF	9	Unmodified	_RIKAINTFF_					0	0	0		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-7|LARP4;ENST00000521120.1_1_12:50835423-50848201:+|nuORF	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MULTI-SECPEP	A375_MHC_IP_R1	1	555.174560546875	2	555.326934	1108.63931	-0.7559	-0.00041977	0.4709	0.0002615	-0.28499	-0.00015827	555.3271409435663	66.464	0.86745	66.464	66.122	66.99	0					39	16	4	0	0	0	0.16595	1	24096	24096		58.679	26.373	1	11879000			43222	6487	31680	31934	42160	42160					0.08934014985220529
RIKAINTFF	9	Unmodified	_RIKAINTFF_					0	0	0		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-7|LARP4;ENST00000521120.1_1_12:50835423-50848201:+|nuORF	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MULTI-SECPEP	A375_MHC_IP_R2	2	555.7268676757812	2	555.326934	1108.63931	-0.87603	-0.00048648	0.24971	0.00013867	-0.62632	-0.00034781	555.3269449565494	65.295	1.0668	66.033	65.715	66.782	0.73811					41	20	4	0	0	0	0.27114	1	24718	24718		58.679	18.721	1	8103600			43223	6487	31680	31934	42161	42161					0.08934014985220529
RIKELPELW	9	Unmodified	_RIKELPELW_					0	0	0		nc|ENSG00000164442|Q99967-2|CITED2;ENSG00000164442|ENST00000367651|CITED2	nc|ENSG00000164442|Q99967-2|CITED2	nc|ENSG00000164442|Q99967-2|CITED2	MULTI-MSMS	A375_MHC_IP_R1	1	395.6323547363281	3	395.232641	1182.67609	0.025632	1.0131E-05	-0.37473	-0.0001481	-0.34909	-0.00013797	395.23248905242673	77.78	0.51133	77.78	77.537	78.048	0					20	9	3	0	0	0	0.60982	1	28404	28404		10.315	0	1	2493600			43224	6840	31681	31935	42162	42162					0.09206266811111163
RIKELPELW	9	Unmodified	_RIKELPELW_					0	0	0		nc|ENSG00000164442|Q99967-2|CITED2;ENSG00000164442|ENST00000367651|CITED2	nc|ENSG00000164442|Q99967-2|CITED2	nc|ENSG00000164442|Q99967-2|CITED2	MULTI-SECPEP	A375_MHC_IP_R2	2	592.7447509765625	2	592.345323	1182.67609	-0.56376	-0.00033394	0.13092	7.7548E-05	-0.43284	-0.00025639	592.3453720431257	76.805	0.50642	77.546	77.2	77.706	0.74139					14	9	2	0	0	0	0.63622	1	29160	29160		24.991	10.586	1	2538900			43225	6840	31681	31935	42163	42163					0.09206266811111163
RIKERQHAL	9	Unmodified	_RIKERQHAL_					0	0	0			REV__nc|ENSG00000102904|Q2TAA8|TSNAXIP1	REV__nc|ENSG00000102904|Q2TAA8|TSNAXIP1	MSMS	A375_MHC_IP_R2	2	384.2864990234375	3	384.231634	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.445	1	35.197	34.697	35.697	0.75225								0	0	0	0.15486	1	12425	12425		8.1555	2.7528	1		+		43226	17239	31682	31936	42164	42164					0.10422436476983421
RIKGKLFTW	9	Unmodified	_RIKGKLFTW_					0	0	0		ENSG00000110660|ENST00000525815|SLC35F2;nc|ENSG00000110660|Q8IXU6-2|SLC35F2	ENSG00000110660|ENST00000525815|SLC35F2	ENSG00000110660|ENST00000525815|SLC35F2	MULTI-MSMS	A375_MHC_IP_R1	1	383.9695739746094	3	383.569476	1147.6866	0.40017	0.00015349	0.5685	0.00021806	0.96867	0.00037155	383.5694664746925	51.294	0.60889	51.294	50.966	51.575	0					25	11	3	0	0	0	0.29981	1	18191	18191		22.658	18.129	1	2131400			43227	2937	31683	31937	42165	42165					0.1186629425621959
RIKKKIKLL	9	Unmodified	_RIKKKIKLL_					0	0	0			REV__ENST00000393667.7_1_3:121414739-121414772:-|nuORF	REV__ENST00000393667.7_1_3:121414739-121414772:-|nuORF	MSMS	A375_MHC_IP_R1	1	570.4186401367188	2	570.421168	1138.82778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.13	1	148.13	147.63	148.63	0								0	0	0	0.15486	1	56575	56575		0	0	1		+		43228	24297	31684	31938	42166	42166					0.26392292629498115
RIKKLVREEY	10	Unmodified	_RIKKLVREEY_					0	0	0			REV__CREB3L3|p.E348Lfs*62|1|0.29|ENSG00000060566|chr19:4171447-4171453|CCGAGAG/-|frameshift_variant	REV__CREB3L3|p.E348Lfs*62|1|0.29|ENSG00000060566|chr19:4171447-4171453|CCGAGAG/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	667.3261108398438	2	667.401161	1332.78777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.13	1	148.15	147.65	148.65	0.018707								0	0	0	0.15637	1	57542	57542		0.40072	0	1		+		43229	15916	31685	31939	42167	42167					0.13468701168289954
RIKQLEGIL	9	Unmodified	_RIKQLEGIL_					0	0	0		nc|ENSG00000092200|Q96KN7-4|RPGRIP1;nc|ENSG00000092200|Q96KN7-5|RPGRIP1;ENSG00000092200|ENST00000400017|RPGRIP1;nc|ENSG00000092200|Q96KN7-6|RPGRIP1	nc|ENSG00000092200|Q96KN7-4|RPGRIP1	nc|ENSG00000092200|Q96KN7-4|RPGRIP1	MULTI-MSMS	A375_MHC_IP_R2	2	357.62890625	3	357.229119	1068.66553	-0.37554	-0.00013415	-0.042006	-1.5006E-05	-0.41755	-0.00014916	357.2291085723399	40.709	0.35611	41.483	41.285	41.641	0.77451					14	6	3	0	0	0	0.52905	1	15114	15114		18.373	2.0985	1	1954700			43230	1999	31686	31940	42168	42168					0.1339428415672046
RIKQLEGIL	9	Unmodified	_RIKQLEGIL_					0	0	0		nc|ENSG00000092200|Q96KN7-4|RPGRIP1;nc|ENSG00000092200|Q96KN7-5|RPGRIP1;ENSG00000092200|ENST00000400017|RPGRIP1;nc|ENSG00000092200|Q96KN7-6|RPGRIP1	nc|ENSG00000092200|Q96KN7-4|RPGRIP1	nc|ENSG00000092200|Q96KN7-4|RPGRIP1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	357.229119	1068.66553	-0.20982	-7.4955E-05	0.27236	9.7296E-05	0.062541	2.2341E-05	357.22906128421096	41.7	0.46127	41.7	41.521	41.982	0	0.10829	0.00015843	NaN	18.373	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2989600			43231	1999	31686	31940							0.1339428415672046
RIKWFKLPFY	10	Unmodified	_RIKWFKLPFY_					0	0	0		AQP9|p.M97I|2|0.25|ENSG00000103569|chr15:58173120-58173120|G/A|missense_variant	AQP9|p.M97I|2|0.25|ENSG00000103569|chr15:58173120-58173120|G/A|missense_variant	AQP9|p.M97I|2|0.25|ENSG00000103569|chr15:58173120-58173120|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	699.8080444335938	2	699.408258	1396.80196	-0.5147	-0.00035999	0.59802	0.00041826	0.083324	5.8278E-05	699.4083297436736	148.79	2.5388	148.81	147.47	150.01	0.018707					179	113	4	0	0	0	0.72645	1	57605	57605		0.45834	0.45834	1	763050			43232	167	31687	31941	42169	42169					0.11943398387211346
RILCLNLRL	9	Unmodified	_RILCLNLRL_					0	0	0		ENST00000504225.1_1_5:180278346-180278472:-|nuORF	ENST00000504225.1_1_5:180278346-180278472:-|nuORF	ENST00000504225.1_1_5:180278346-180278472:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	371.2681579589844	3	371.902349	1112.68522	-0.038748	-1.441E-05	-0.18616	-6.9234E-05	-0.22491	-8.3645E-05	371.9021761042476	36.754	0.55884	37.525	37.258	37.816	0.7709					13	10	2	0	0	0	0.78348	1	13408	13408		0.96228	0	1	1592500			43233	12817	31688	31942	42170	42170					0.1333833689579933
RILDESHSI	9	Unmodified	_RILDESHSI_					0	0	0		ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8;ENST00000554384.1_1_14:21876861-21881122:-|nuORF	ENSG00000100888|ENST00000646647|CHD8	ENSG00000100888|ENST00000646647|CHD8	MULTI-SECPEP	A375_MHC_IP_R1	1	535.6849975585938	2	535.285463	1068.55637	-0.6856	-0.00036699	-0.12548	-6.7166E-05	-0.81107	-0.00043416	535.2853112039704	33.98	0.45535	33.98	33.798	34.253	0					17	8	3	0	0	0	0.4465	1	11151	11151		31.268	5.0002	1	10921000			43234	2228	31689	31943	42171	42171					0.024836534665837462
RILDESHSI	9	Unmodified	_RILDESHSI_					0	0	0		ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8;ENST00000554384.1_1_14:21876861-21881122:-|nuORF	ENSG00000100888|ENST00000646647|CHD8	ENSG00000100888|ENST00000646647|CHD8	MULTI-SECPEP	A375_MHC_IP_R2	2	535.6851806640625	2	535.285463	1068.55637	-1.0008	-0.00053573	0.036774	1.9685E-05	-0.96406	-0.00051604	535.2854311276947	33.119	0.40814	33.871	33.686	34.095	0.75225					17	7	3	0	0	0	0.0575	1	11840	11840		59.368	22.862	1	9653900			43235	2228	31689	31943	42172	42172					0.024836534665837462
RILDLRIAT	9	Unmodified	_RILDLRIAT_					0	0	0		ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7687207-7690948:-|nuORF	ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	MSMS	A375_MHC_IP_R2	2	535.7332153320312	2	535.837665	1069.66078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.198	1	29.897	29.397	30.397	0.69872								0	0	0	0.15486	1	10176	10176		6.7232	0	1				43236	1640	31690	31944	42173	42173					0.12873400013927494
RILEIQPHHA	10	Unmodified	_RILEIQPHHA_					0	0	0		ENST00000465745.6_1_9:35094156-35095562:-|nuORF;ENST00000474436.1_1_9:35093318-35095562:-|nuORF;nc|ENSG00000165282|Q8TEQ8-2|PIGO;ENSG00000165282|ENST00000378617|PIGO	ENST00000465745.6_1_9:35094156-35095562:-|nuORF	ENST00000465745.6_1_9:35094156-35095562:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	405.9657897949219	3	405.231523	1212.67274	-0.71755	-0.00029077	0.45621	0.00018487	-0.26134	-0.00010591	405.2317088955969	26.702	0.40359	26.702	26.524	26.928	0					12	7	2	0	0	0	0.73104	1	8009	8009		27.088	24.806	1	4714100			43237	6935	31691	31945	42174	42174					0.07491016757148827
RILEIQPHHA	10	Unmodified	_RILEIQPHHA_					0	0	0		ENST00000465745.6_1_9:35094156-35095562:-|nuORF;ENST00000474436.1_1_9:35093318-35095562:-|nuORF;nc|ENSG00000165282|Q8TEQ8-2|PIGO;ENSG00000165282|ENST00000378617|PIGO	ENST00000465745.6_1_9:35094156-35095562:-|nuORF	ENST00000465745.6_1_9:35094156-35095562:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	405.631103515625	3	405.231523	1212.67274	-0.4335	-0.00017567	-0.067662	-2.7419E-05	-0.50116	-0.00020309	405.23149789943307	25.866	0.66131	26.526	26.296	26.957	0.65992					14	12	2	0	0	0	0.66308	1	8718	8718		10.315	4.5318	1	4613300			43238	6935	31691	31945	42175	42175					0.07491016757148827
RILFFTRKF	9	Unmodified	_RILFFTRKF_					0	0	0		ENST00000293618.12_1_12:50824317-50829312:+|nuORF	ENST00000293618.12_1_12:50824317-50829312:+|nuORF	ENST00000293618.12_1_12:50824317-50829312:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	410.31671142578125	3	409.916876	1226.7288	-0.064142	-2.6293E-05	-0.29064	-0.00011914	-0.35479	-0.00014543	409.9168188596959	64.571	0.45806	64.571	64.292	64.75	0					15	8	2	0	0	0	0.11638	1	23383	23383		47.732	39.288	1	1888100			43239	10484	31692	31946	42176	42176					0.12450269664600455
RILGDLSHLLA	11	Unmodified	_RILGDLSHLLA_					0	0	0		nc|ENSG00000100196|O43731-2|KDELR3;ENSG00000100196|ENST00000216014|KDELR3	nc|ENSG00000100196|O43731-2|KDELR3	nc|ENSG00000100196|O43731-2|KDELR3	MULTI-MSMS	A375_MHC_IP_R1	1	403.6432800292969	3	403.243429	1206.70846	-0.5301	-0.00021376	0.23856	9.6198E-05	-0.29154	-0.00011756	403.24351878861967	33.095	0.4043	33.095	32.836	33.241	0					13	7	2	0	0	0	0.73502	1	10790	10790		4.1166	0.2403	1	2644600			43240	2130	31693	31947	42177	42177					0.113370542141638
RILLKKLAVKV	11	Unmodified	_RILLKKLAVKV_					0	0	0			REV__ENSG00000186881|ENST00000334726|OR13F1	REV__ENSG00000186881|ENST00000334726|OR13F1	MSMS	A375_MHC_IP_R1	1	640.9896240234375	2	640.960658	1279.90676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.133	1	71.133	70.633	71.633	0								0	0	0	0.1636	1	25839	25839		0	0	1		+		43241	21993	31694	31948	42178	42178					0.2780051986376293
RILLKKLAVKV	11	Unmodified	_RILLKKLAVKV_					0	0	0			REV__ENSG00000186881|ENST00000334726|OR13F1	REV__ENSG00000186881|ENST00000334726|OR13F1	MSMS	A375_MHC_IP_R1	1	640.9892578125	2	640.960658	1279.90676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.69	1	71.69	71.19	72.19	0								0	0	0	0.1636	1	26060	26060		0	0	1		+		43242	21993	31694	31948	42179	42179					0.2780051986376293
RILLKKLAVKV	11	Unmodified	_RILLKKLAVKV_					0	0	0			REV__ENSG00000186881|ENST00000334726|OR13F1	REV__ENSG00000186881|ENST00000334726|OR13F1	MSMS	A375_MHC_IP_R1	1	640.9898681640625	2	640.960658	1279.90676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.809	1	72.809	72.309	73.309	0								0	0	0	0.1636	1	26497	26497		0	0	1		+		43243	21993	31694	31948	42180	42180					0.2780051986376293
RILLKKLAVKV	11	Unmodified	_RILLKKLAVKV_					0	0	0			REV__ENSG00000186881|ENST00000334726|OR13F1	REV__ENSG00000186881|ENST00000334726|OR13F1	MSMS	A375_MHC_IP_R1	1	640.989990234375	2	640.960658	1279.90676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.366	1	73.366	72.866	73.866	0								0	0	0	0.1636	1	26711	26711		0	0	1		+		43244	21993	31694	31948	42181	42181					0.2780051986376293
RILLKKLAVKV	11	Unmodified	_RILLKKLAVKV_					0	0	0			REV__ENSG00000186881|ENST00000334726|OR13F1	REV__ENSG00000186881|ENST00000334726|OR13F1	MSMS	A375_MHC_IP_R1	1	640.9901123046875	2	640.960658	1279.90676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.929	1	73.929	73.429	74.429	0								0	0	0	0.1636	1	26927	26927		0	0	1		+		43245	21993	31694	31948	42182	42182					0.2780051986376293
RILLKKLAVKV	11	Unmodified	_RILLKKLAVKV_					0	0	0			REV__ENSG00000186881|ENST00000334726|OR13F1	REV__ENSG00000186881|ENST00000334726|OR13F1	MSMS	A375_MHC_IP_R1	1	640.98974609375	2	640.960658	1279.90676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.477	1	74.477	73.977	74.977	0								0	0	0	0.1636	1	27128	27128		0	0	1		+		43246	21993	31694	31948	42183	42183					0.2780051986376293
RILLKKLAVKV	11	Unmodified	_RILLKKLAVKV_					0	0	0			REV__ENSG00000186881|ENST00000334726|OR13F1	REV__ENSG00000186881|ENST00000334726|OR13F1	MSMS	A375_MHC_IP_R1	1	640.9894409179688	2	640.960658	1279.90676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.205	1	76.205	75.705	76.705	0								0	0	0	0.1636	1	27774	27774		0	0	1		+		43247	21993	31694	31948	42184	42184					0.2780051986376293
RILLKKLAVKV	11	Unmodified	_RILLKKLAVKV_					0	0	0			REV__ENSG00000186881|ENST00000334726|OR13F1	REV__ENSG00000186881|ENST00000334726|OR13F1	MSMS	A375_MHC_IP_R2	2	640.9899291992188	2	640.960658	1279.90676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.038	1	70.772	70.272	71.272	0.73421								0	0	0	0.1636	1	26549	26549		0	0	1		+		43248	21993	31694	31948	42185	42185					0.2780051986376293
RILLKKLAVKV	11	Unmodified	_RILLKKLAVKV_					0	0	0			REV__ENSG00000186881|ENST00000334726|OR13F1	REV__ENSG00000186881|ENST00000334726|OR13F1	MSMS	A375_MHC_IP_R2	2	640.9900512695312	2	640.960658	1279.90676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.598	1	71.332	70.832	71.832	0.73421								0	0	0	0.1636	1	26762	26762		0	0	1		+		43249	21993	31694	31948	42186	42186					0.2780051986376293
RILLKKLAVKV	11	Unmodified	_RILLKKLAVKV_					0	0	0			REV__ENSG00000186881|ENST00000334726|OR13F1	REV__ENSG00000186881|ENST00000334726|OR13F1	MSMS	A375_MHC_IP_R2	2	640.9896850585938	2	640.960658	1279.90676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.812	1	72.546	72.046	73.046	0.73421								0	0	0	0.1636	1	27246	27246		0	0	1		+		43250	21993	31694	31948	42187	42187					0.2780051986376293
RILLKKLAVKV	11	Unmodified	_RILLKKLAVKV_					0	0	0			REV__ENSG00000186881|ENST00000334726|OR13F1	REV__ENSG00000186881|ENST00000334726|OR13F1	MSMS	A375_MHC_IP_R2	2	640.9896240234375	2	640.960658	1279.90676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.367	1	73.102	72.602	73.602	0.73541								0	0	0	0.1636	1	27461	27461		0	0	1		+		43251	21993	31694	31948	42188	42188					0.2780051986376293
RILLKKLAVKV	11	Unmodified	_RILLKKLAVKV_					0	0	0			REV__ENSG00000186881|ENST00000334726|OR13F1	REV__ENSG00000186881|ENST00000334726|OR13F1	MSMS	A375_MHC_IP_R2	2	640.9900512695312	2	640.960658	1279.90676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.928	1	73.663	73.163	74.163	0.73541								0	0	0	0.1636	1	27683	27683		0	0	1		+		43252	21993	31694	31948	42189	42189					0.2780051986376293
RILLKKLAVKV	11	Unmodified	_RILLKKLAVKV_					0	0	0			REV__ENSG00000186881|ENST00000334726|OR13F1	REV__ENSG00000186881|ENST00000334726|OR13F1	MSMS	A375_MHC_IP_R2	2	640.9899291992188	2	640.960658	1279.90676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.492	1	74.227	73.727	74.727	0.73541								0	0	0	0.1636	1	27894	27894		0	0	1		+		43253	21993	31694	31948	42190	42190					0.2780051986376293
RILLKKLAVKV	11	Unmodified	_RILLKKLAVKV_					0	0	0			REV__ENSG00000186881|ENST00000334726|OR13F1	REV__ENSG00000186881|ENST00000334726|OR13F1	MSMS	A375_MHC_IP_R2	2	640.989990234375	2	640.960658	1279.90676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.611	1	75.348	74.848	75.848	0.73752								0	0	0	0.1636	1	28319	28319		0	0	1		+		43254	21993	31694	31948	42191	42191					0.2780051986376293
RILLKKLAVKV	11	Unmodified	_RILLKKLAVKV_					0	0	0			REV__ENSG00000186881|ENST00000334726|OR13F1	REV__ENSG00000186881|ENST00000334726|OR13F1	MSMS	A375_MHC_IP_R2	2	640.9896240234375	2	640.960658	1279.90676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.316	1	76.056	75.556	76.556	0.74052								0	0	0	0.1636	1	28588	28588		0	0	1		+		43255	21993	31694	31948	42192	42192					0.2780051986376293
RILMNVEKF	9	Unmodified	_RILMNVEKF_					0	0	0		tr|U7STJ3|U7STJ3_FUSNUDUF4325domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01078PE=4SV=1	tr|U7STJ3|U7STJ3_FUSNUDUF4325domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01078PE=4SV=1	tr|U7STJ3|U7STJ3_FUSNUDUF4325domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01078PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	384.26824951171875	3	383.886476	1148.6376	0.43029	0.00016518	-0.3694	-0.00014181	0.060886	2.3373E-05	383.88630849580267	34.928	1.2229	34.928	34.81	36.033	0					43	23	2	0	0	0	0.58047	1	11624	11624		10.8	1.2555	1	3850500			43256	29698	31695	31949	42193	42193					0.06922637904949624
RILPEAHQRTW	11	Unmodified	_RILPEAHQRTW_					0	0	0		ENSG00000204394|ENST00000375663|VARS1;ENST00000483275.1_1_6:31749724-31750195:-|nuORF;ENST00000461874.1_1_6:31750021-31750195:-|nuORF	ENSG00000204394|ENST00000375663|VARS1	ENSG00000204394|ENST00000375663|VARS1	MULTI-MSMS	A375_MHC_IP_R1	1	469.9925537109375	3	469.593232	1405.75787	-0.39193	-0.00018405	-0.48262	-0.00022663	-0.87455	-0.00041068	469.59294700427205	34.556	0.30288	34.556	34.405	34.708	0					14	5	3	0	0	0	0.57268	1	11428	11428		25.438	20.39	1	2578900			43257	9439	31696	31950	42194	42194					0.07121762222936923
RILPEAHQRTW	11	Unmodified	_RILPEAHQRTW_					0	0	0		ENSG00000204394|ENST00000375663|VARS1;ENST00000483275.1_1_6:31749724-31750195:-|nuORF;ENST00000461874.1_1_6:31750021-31750195:-|nuORF	ENSG00000204394|ENST00000375663|VARS1	ENSG00000204394|ENST00000375663|VARS1	MULTI-MATCH	A375_MHC_IP_R2	2		3	469.593232	1405.75787	-1.0431	-0.00048986	0.034258	1.6088E-05	-1.0089	-0.00047377	469.5932028498554	33.546	0.50765	34.298	33.992	34.5	0.75225	-0.12923	0.00039199	NaN	25.438	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2055500			43258	9439	31696	31950							0.07121762222936923
RILPVKTR	8	Unmodified	_RILPVKTR_					0	0	0		ENST00000315872.10_1_2:11323403-11323562:-|nuORF	ENST00000315872.10_1_2:11323403-11323562:-|nuORF	ENST00000315872.10_1_2:11323403-11323562:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	983.0514526367188	1	982.65201	981.644734	-0.18782	-0.00018456	0.017462	1.7159E-05	-0.17036	-0.0001674	982.6517264213979	147.78	0.25035	147.78	147.68	147.93	0					38	16	3	0	0	0	0.77844	1	56440	56440		0.6015	0	1	392010			43259	10658	31697	31951	42195	42195					0.1531773856770542
RILQKLIKP	9	Unmodified	_RILQKLIKP_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	A375_MHC_IP_R1	1	370.6570739746094	3	370.257009	1107.7492	0.1751	6.4831E-05	0.072664	2.6904E-05	0.24776	9.1735E-05	370.2570035568684	46.791	0.55696	46.791	46.395	46.952	0					15	10	2	0	0	0	0.77563	1	16466	16466		0.23584	0	1	1334800			43260	4093	31698	31952	42196	42196					0.19963440324431758
RILSLTRRQ	9	Unmodified	_RILSLTRRQ_					0	0	0			REV__nc|ENSG00000235865|Q9NRJ2|GSN-AS1	REV__nc|ENSG00000235865|Q9NRJ2|GSN-AS1	MSMS	A375_MHC_IP_R2	2	381.6373596191406	3	381.575401	1141.70437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.298	1	20.909	20.409	21.409	0.61029								0	0	0	0.15486	1	6307	6307		5.2969	0	1		+		43261	27511	31699	31953	42197	42197					0.13919009511073455
RILVDVEKV	9	Unmodified	_RILVDVEKV_					0	0	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	A375_MHC_IP_R1	1	536.2318115234375	2	535.832049	1069.64954	-0.52804	-0.00028294	-0.19956	-0.00010693	-0.7276	-0.00038987	535.8318823723239	49.82	1.0215	49.82	49.591	50.613	0					53	19	4	0	0	0	0.027055	1	17611	17611		100.71	48.44	1	40618000			43262	2241	31700	31954	42198	42198					0.11750577919792704
RILVDVEKV	9	Unmodified	_RILVDVEKV_					0	0	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	A375_MHC_IP_R2	2	536.2315673828125	2	535.832049	1069.64954	-0.98881	-0.00052984	0.15065	8.0726E-05	-0.83816	-0.00044911	535.8320667734879	48.89	1.1174	49.647	49.383	50.5	0.75736					50	21	4	0	0	0	0.09145	1	18332	18332		78.06	32.361	1	36167000			43263	2241	31700	31954	42199	42199					0.11750577919792704
RILVEKRCW	9	Unmodified	_RILVEKRCW_					0	0	0		nc|ENSG00000128463|Q5J8M3-2|EMC4;ENSG00000128463|ENST00000267750|EMC4;ENST00000558810.1_1_15:34517791-34520058:+|nuORF	nc|ENSG00000128463|Q5J8M3-2|EMC4	nc|ENSG00000128463|Q5J8M3-2|EMC4	MULTI-SECPEP	A375_MHC_IP_R2	2	401.28424072265625	3	401.565737	1201.67538	-0.22231	-8.9274E-05	0.18292	7.3456E-05	-0.039391	-1.5818E-05	401.56567771003466	34.835	0.70689	35.598	35.324	36.03	0.76338					19	13	2	0	0	0	0.73577	1	12606	12606		18.721	18.721	1	1296300			43264	14590	31701	31955	42200	42200					0.08261148890437653
RILVNGCHW	9	Unmodified	_RILVNGCHW_					0	0	0		ENST00000522519.5_1_8:72755563-72755689:+|nuORF	ENST00000522519.5_1_8:72755563-72755689:+|nuORF	ENST00000522519.5_1_8:72755563-72755689:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	366.9708251953125	3	366.527282	1096.56002	-0.12665	-4.6422E-05	-0.36915	-0.0001353	-0.4958	-0.00018173	366.861563712183	38.193	0.40664	38.193	37.913	38.319	0					10	7	2	0	0	0	0.76187	1	12834	12834		4.5289	0	1	2222700			43265	13026	31702	31956	42201	42201					0.015600447594351863
RILYSDDGQKW	11	Unmodified	_RILYSDDGQKW_					0	0	0		ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	MULTI-MSMS	A375_MHC_IP_R2	2	461.301513671875	3	460.901731	1379.68336	-0.53791	-0.00024792	-0.38442	-0.00017718	-0.92233	-0.0004251	460.90175875894397	45.127	0.40476	45.895	45.696	46.101	0.7675					18	7	3	0	0	0	0.56099	1	16884	16884		26.346	21.147	1	2170300			43266	1280	31703	31957	42202	42202					0.00870954620882003
RILYSDDGQKW	11	Unmodified	_RILYSDDGQKW_					0	0	0		ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	460.901731	1379.68336	-0.13379	-6.1663E-05	-0.010319	-4.756E-06	-0.14411	-6.6419E-05	460.90170895926235	45.966	0.40601	45.966	45.789	46.195	0	0.03567	0.00020118	NaN	26.346	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2776400			43267	1280	31703	31957							0.00870954620882003
RIMEFTTTL	9	Unmodified	_RIMEFTTTL_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	A375_MHC_IP_R2	2	556.6941528320312	2	556.294442	1110.57433	-0.84761	-0.00047152	-0.57108	-0.00031769	-1.4187	-0.00078921	556.2939650232562	81.691	0.80724	82.434	81.877	82.684	0.74293					25	15	3	0	0	0	0.082375	1	31004	31004		53.833	11.738	1	3353700			43268	9866	31704	31958	42203	42203					0.023466523970455455
RIMEKIRNV	9	Oxidation (M)	_RIM(Oxidation (M))EKIRNV_		RIM(1)EKIRNV		RIM(44)EKIRNV	0	0	1		ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	MULTI-MSMS	A375_MHC_IP_R1	1	392.6289367675781	3	392.229014	1173.66521	0.35413	0.0001389	-0.050687	-1.9881E-05	0.30345	0.00011902	392.2289510587421	21.321	0.55771	21.321	21.048	21.606	0					23	10	3	0	0	0	0.135	1	5597	5597		44.392	27.343	1	8950600			43269	7108	31705	31959	42204	42204		361			0.08532541165186558
RIMEKIRNV	9	Oxidation (M)	_RIM(Oxidation (M))EKIRNV_		RIM(1)EKIRNV		RIM(44)EKIRNV	0	0	1		ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	MULTI-SECPEP	A375_MHC_IP_R1	1	392.98651123046875	3	392.229014	1173.66521	-0.058633	-2.2998E-05	0.75693	0.00029689	0.6983	0.00027389	392.22912961650957	19.303	0.58887	19.303	19.238	19.827	0					33	11	4	0	0	0	0.31976	1	4701	4701		44.392	22.592	1	59901000			43270	7108	31705	31959	42205	42205		361			0.08532541165186558
RIMEKIRNV	9	Unmodified	_RIMEKIRNV_					0	0	0		ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	MSMS	A375_MHC_IP_R1	1	386.9241638183594	3	386.897375	1157.6703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.661	1	26.661	26.161	27.161	0								0	0	0	0.15119	1	7973	7973		19.626	6.0111	1				43271	7108	31705	31960	42206	42206					0.09776845027818126
RIMEKIRNV	9	Unmodified	_RIMEKIRNV_					0	0	0		ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	MULTI-MSMS	A375_MHC_IP_R2	2	387.2972106933594	3	386.897375	1157.6703	-0.58642	-0.00022688	0.29822	0.00011538	-0.2882	-0.0001115	386.89751070513984	25.524	0.76264	26.172	25.929	26.692	0.64853					26	14	2	0	0	0	0.0090362	2	8533	8533;8583		99.864	59.941	1	48867000			43272	7108	31705	31960	42207;42208	42207					0.09776845027818126
RINATVWKL	9	Unmodified	_RINATVWKL_					0	0	0		nc|ENSG00000205336|Q9Y653-4|ADGRG1;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;nc|ENSG00000205336|Q9Y653-5|ADGRG1;ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF	nc|ENSG00000205336|Q9Y653-4|ADGRG1	nc|ENSG00000205336|Q9Y653-4|ADGRG1	MULTI-SECPEP	A375_MHC_IP_R1	1	366.9549865722656	3	367.557348	1099.65021	0.49558	0.00018216	0.15374	5.6509E-05	0.64933	0.00023866	367.5573870164483	49.801	0.51025	49.801	49.591	50.101	0					11	9	2	0	0	0	0.76187	1	17700	17700		4.5289	0.33936	1	1456700			43273	9509	31706	31961	42209	42209					0.10437417359503343
RINIPPPSV	9	Unmodified	_RINIPPPSV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	A375_MHC_IP_R1	1	497.1976623535156	2	496.798009	991.581465	-0.28487	-0.00014152	-0.1516	-7.5316E-05	-0.43647	-0.00021684	496.7979217651325	56.406	1.6785	56.406	55.584	57.263	0					58	32	2	0	0	0	0.20645	1	20296	20296		56.177	12.319	1	2610500			43274	3330	31707	31962	42210	42210					0.08533753059805349
RINIPPPSV	9	Unmodified	_RINIPPPSV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	A375_MHC_IP_R2	2	497.1974182128906	2	496.798009	991.581465	-0.5947	-0.00029544	-0.16453	-8.1739E-05	-0.75923	-0.00037718	496.7979494201194	55.343	1.6797	56.094	55.422	57.101	0.75075					51	32	2	0	0	0	0.083712	1	20898	20898		47.749	0	1	2159900			43275	3330	31707	31962	42211	42211					0.08533753059805349
RINSFKMNW	9	Unmodified	_RINSFKMNW_					0	0	0		ENST00000433010.5_1_3:184017407-184017693:+|nuORF	ENST00000433010.5_1_3:184017407-184017693:+|nuORF	ENST00000433010.5_1_3:184017407-184017693:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	598.7047119140625	2	598.305675	1194.5968	-0.9623	-0.00057575	-0.40426	-0.00024187	-1.3666	-0.00081762	598.3057319954596	56.987	0.4081	57.737	57.561	57.969	0.75015					10	7	2	0	0	0	0.10622	1	21557	21557		49.554	27.808	1	2781100			43276	11886	31708	31963	42212	42212					0.007282965853391943
RINSFKMNW	9	Unmodified	_RINSFKMNW_					0	0	0		ENST00000433010.5_1_3:184017407-184017693:+|nuORF	ENST00000433010.5_1_3:184017407-184017693:+|nuORF	ENST00000433010.5_1_3:184017407-184017693:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	598.305675	1194.5968	-0.41812	-0.00025016	0.79196	0.00047383	0.37383	0.00022367	598.306443073476	57.949	0.40624	57.949	57.669	58.075	0	0.10615	0.0012609	NaN	49.554	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1481900			43277	11886	31708	31963							0.007282965853391943
RIPAYFVTV	9	Unmodified	_RIPAYFVTV_					0	0	0		ENSG00000204394|ENST00000375663|VARS1;ENST00000483275.1_1_6:31749724-31750195:-|nuORF;ENST00000461874.1_1_6:31749609-31749932:-|nuORF	ENSG00000204394|ENST00000375663|VARS1	ENSG00000204394|ENST00000375663|VARS1	MULTI-MSMS	A375_MHC_IP_R1	1	533.3247680664062	2	533.30821	1064.60187	-0.52629	-0.00028067	0.14841	7.9147E-05	-0.37788	-0.00020153	533.3082009555776	88.897	0.91458	88.897	88.561	89.476	0					38	17	3	0	0	0	0.44183	1	32684	32684		30.637	11.38	1	13880000			43278	9439	31709	31964	42213	42213					0.07214923719607214
RIPAYFVTV	9	Unmodified	_RIPAYFVTV_					0	0	0		ENSG00000204394|ENST00000375663|VARS1;ENST00000483275.1_1_6:31749724-31750195:-|nuORF;ENST00000461874.1_1_6:31749609-31749932:-|nuORF	ENSG00000204394|ENST00000375663|VARS1	ENSG00000204394|ENST00000375663|VARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	533.7070922851562	2	533.30821	1064.60187	-0.66883	-0.00035669	0.2576	0.00013738	-0.41124	-0.00021932	533.308165648145	88.016	0.96366	88.748	88.367	89.331	0.7318					38	18	3	0	0	0	0.059859	1	33433	33433		53.833	27.565	1	15625000			43279	9439	31709	31964	42214	42214					0.07214923719607214
RIPKIQKL	8	Unmodified	_RIPKIQKL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-SECPEP	A375_MHC_IP_R1	1	498.6505432128906	2	498.339844	994.665135	-0.70065	-0.00034916	-0.079985	-3.986E-05	-0.78063	-0.00038902	498.33979601443264	26.63	0.45423	26.63	26.474	26.928	0					14	8	2	0	0	0	0.60242	1	7938	7938		46.021	17.534	1	5129500			43280	2906	31710	31965	42215	42215					0.16758909227496588
RIPKIQKL	8	Unmodified	_RIPKIQKL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	A375_MHC_IP_R2	2	498.7394714355469	2	498.339844	994.665135	-0.9754	-0.00048608	0.14378	7.1651E-05	-0.83162	-0.00041443	498.339898150752	25.712	0.55979	26.372	26.194	26.754	0.65992					15	10	3	0	0	0	0.68328	1	8655	8655		39.957	11.47	1	3676800			43281	2906	31710	31965	42216	42216					0.16758909227496588
RIPKLQQL	8	Unmodified	_RIPKLQQL_					0	0	0		ENSG00000187522|ENST00000378372|HSPA14	ENSG00000187522|ENST00000378372|HSPA14	ENSG00000187522|ENST00000378372|HSPA14	MULTI-SECPEP	A375_MHC_IP_R1	1	498.72149658203125	2	498.321651	994.62875	-0.39257	-0.00019562	0.070908	3.5335E-05	-0.32166	-0.00016029	498.32164793884886	39.427	0.60792	39.427	39.136	39.744	0					25	11	3	0	0	0	0.25559	1	13450	13450		77.984	0	1	7702300			43282	8830	31711	31966	42217	42217					0.13122032330807087
RIPKLQQL	8	Unmodified	_RIPKLQQL_					0	0	0		ENSG00000187522|ENST00000378372|HSPA14	ENSG00000187522|ENST00000378372|HSPA14	ENSG00000187522|ENST00000378372|HSPA14	MULTI-SECPEP	A375_MHC_IP_R2	2	498.7211608886719	2	498.321651	994.62875	-0.89543	-0.00044621	0.013967	6.9601E-06	-0.88146	-0.00043925	498.3216233275474	38.434	0.76447	39.209	38.843	39.607	0.77451					22	14	2	0	0	0	0.64636	1	14117	14117		50.855	0	1	5846200			43283	8830	31711	31966	42218	42218					0.13122032330807087
RIPLMIVFIL	10	Unmodified	_RIPLMIVFIL_					0	0	0		tr|U7T3G4|U7T3G4_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00266PE=4SV=1	tr|U7T3G4|U7T3G4_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00266PE=4SV=1	tr|U7T3G4|U7T3G4_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00266PE=4SV=1	MSMS	A375_MHC_IP_R2	2	405.6218566894531	3	405.594634	1213.76207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.581	1	20.191	19.691	20.691	0.61029								0	0	0	0.15588	1	6028	6028		1.7423	0	1				43284	29973	31712	31967	42219	42219					0.16374135392311473
RIPLRGPRE	9	Unmodified	_RIPLRGPRE_					0	0	0		ENST00000584250.1_2_18:21594410-21594599:+|nuORF	ENST00000584250.1_2_18:21594410-21594599:+|nuORF	ENST00000584250.1_2_18:21594410-21594599:+|nuORF	MSMS	A375_MHC_IP_R1	1	547.732177734375	2	547.333082	1092.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.23	1	144.23	143.73	144.73	0								0	0	0	0.15486	1	55314	55314		6.7232	0	1				43285	13702	31713	31968	42220	42220					0.10899051448268438
RIPPVGPSI	9	Unmodified	_RIPPVGPSI_					0	0	0		ENST00000593460.1_1_19:18120575-18120941:+|nuORF;nc|ENSG00000105643|Q8TBH0-2|ARRDC2;ENSG00000105643|ENST00000222250|ARRDC2	ENST00000593460.1_1_19:18120575-18120941:+|nuORF	ENST00000593460.1_1_19:18120575-18120941:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	468.3115539550781	2	468.287277	934.560001	-0.33577	-0.00015724	-0.34609	-0.00016207	-0.68186	-0.00031931	468.2872203790344	61.005	1.1195	61.005	60.159	61.279	0					28	21	2	0	0	0	0.44024	1	21726	21726		22.736	4.6013	1	1235400			43286	2621	31714	31969	42221	42221					0.09010368031078997
RIPPVGPSI	9	Unmodified	_RIPPVGPSI_					0	0	0		ENST00000593460.1_1_19:18120575-18120941:+|nuORF;nc|ENSG00000105643|Q8TBH0-2|ARRDC2;ENSG00000105643|ENST00000222250|ARRDC2	ENST00000593460.1_1_19:18120575-18120941:+|nuORF	ENST00000593460.1_1_19:18120575-18120941:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	468.6871337890625	2	468.287277	934.560001	-0.25631	-0.00012003	0.067792	3.1746E-05	-0.18852	-8.8282E-05	468.28727172644676	63.021	3.4201	63.021	61.483	64.903	0					100	66	2	0	0	0	0.054426	2	22527	22527;23036		62.573	29.812	1	1604600			43287	2621	31714	31969	42222;42223	42222					0.09010368031078997
RIPPVGPSI	9	Unmodified	_RIPPVGPSI_					0	0	0		ENST00000593460.1_1_19:18120575-18120941:+|nuORF;nc|ENSG00000105643|Q8TBH0-2|ARRDC2;ENSG00000105643|ENST00000222250|ARRDC2	ENST00000593460.1_1_19:18120575-18120941:+|nuORF	ENST00000593460.1_1_19:18120575-18120941:+|nuORF	MSMS	A375_MHC_IP_R2	2	468.311279296875	2	468.287277	934.560001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.504	1	60.252	59.752	60.752	0.74714								0	0	0	0.12472	1	22519	22519		34.402	15.145	1				43288	2621	31714	31969	42224	42224					0.09010368031078997
RIPPVGPSI	9	Unmodified	_RIPPVGPSI_					0	0	0		ENST00000593460.1_1_19:18120575-18120941:+|nuORF;nc|ENSG00000105643|Q8TBH0-2|ARRDC2;ENSG00000105643|ENST00000222250|ARRDC2	ENST00000593460.1_1_19:18120575-18120941:+|nuORF	ENST00000593460.1_1_19:18120575-18120941:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	468.1292419433594	2	468.287277	934.560001	-0.9162	-0.00042904	0.34119	0.00015977	-0.57501	-0.00026927	468.28739465566406	60.676	0.55807	61.421	61.16	61.718	0.74504					15	10	2	0	0	0	0.20645	1	22943	22943		32.786	18.88	1	1269300			43289	2621	31714	31969	42225	42225					0.09010368031078997
RIPSDIAKLH	10	Unmodified	_RIPSDIAKLH_					0	0	0		ENSG00000113300|ENST00000261951|CNOT6;ENST00000502447.1_1_5:179956276-179991564:+|nuORF	ENSG00000113300|ENST00000261951|CNOT6	ENSG00000113300|ENST00000261951|CNOT6	MULTI-MSMS	A375_MHC_IP_R1	1	383.592529296875	3	383.89614	1148.66659	0.27982	0.00010742	0.075659	2.9045E-05	0.35548	0.00013647	383.89621478767253	34.076	1.52	34.076	33.698	35.218	0					75	29	5	0	0	0	0.70312	2	11506	11459;11506		10.899	5.8514	1	239410000			43290	3139	31715	31970	42226;42227	42227					0.09820498525596122
RIQETQAEL	9	Unmodified	_RIQETQAEL_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	A375_MHC_IP_R1	1	544.1923217773438	2	544.290745	1086.56694	-0.87055	-0.00047383	2.05	0.0011158	1.1795	0.00064197	544.7920461029519	30.578	0.40525	30.578	30.503	30.908	0					9	7	2	0	0	0	0.19747	1	9769	9769		38.176	1.6694	1	938730			43291	1628	31716	31971	42228	42228					0.027116361209891693
RIQGYEVKYW	10	Unmodified	_RIQGYEVKYW_					0	0	0		nc|ENSG00000144619|Q8IWV2-3|CNTN4;nc|ENSG00000144619|Q8IWV2-4|CNTN4;ENSG00000144619|ENST00000418658|CNTN4;nc|ENSG00000144619|Q8IWV2-2|CNTN4;ENST00000484686.1_1_3:3081693-3097901:+|nuORF	nc|ENSG00000144619|Q8IWV2-3|CNTN4	nc|ENSG00000144619|Q8IWV2-3|CNTN4	MSMS	A375_MHC_IP_R1	1	671.3889770507812	2	671.351137	1340.68772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.51	1	73.51	73.01	74.01	0								0	0	0	0.15353	1	26766	26766		9.3831	1.7742	1				43292	5498	31717	31972	42229	42229					0.031004638344711566
RIQHALETI	9	Unmodified	_RIQHALETI_					0	0	0		ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;DMXL2|p.T2022Hfs*16|1|0.5|ENSG00000104093|chr15:51481042-51481042|T/-|frameshift_variant;DMXL2|p.I1754Lfs*19|1|0.32|ENSG00000104093|chr15:51486296-51486296|A/-|frameshift_variant;nc|ENSG00000104093|Q8TDJ6-2|DMXL2	ENSG00000104093|ENST00000560891|DMXL2	ENSG00000104093|ENST00000560891|DMXL2	MULTI-MSMS	A375_MHC_IP_R1	1	361.27691650390625	3	360.876857	1079.60874	0.29342	0.00010589	-0.56251	-0.000203	-0.26909	-9.7108E-05	360.87672234916437	51.534	0.50702	51.534	51.322	51.829	0					12	9	2	0	0	0	0.57432	1	18318	18318		16.149	0.41048	1	3026200			43293	2485	31718	31973	42230	42230					0.07212236600184951
RIQPFKRRRRR	11	Unmodified	_RIQPFKRRRRR_					0	0	0			REV__ENST00000475854.1_1_X:100914419-100914797:-|nuORF	REV__ENST00000475854.1_1_X:100914419-100914797:-|nuORF	MSMS	A375_MHC_IP_R2	2	784.9947509765625	2	784.995283	1567.97601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.77	1	105.53	105.03	106.03	0.76308								0	0	0	0.1636	1	39634	39634		0	0	1		+		43294	23611	31719	31974	42231	42231					0.21474416655883033
RIQSKLKYT	9	Unmodified	_RIQSKLKYT_					0	0	0			REV__ENST00000524413.5_1_10:25310680-25310803:+|nuORF	REV__ENST00000524413.5_1_10:25310680-25310803:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	379.9486083984375	3	379.564391	1135.67134	0.16409	6.2283E-05	2.3812	0.00090381	2.5453	0.00096609	379.8993290476382	19.343	0.23279	19.343	19.238	19.471	0					6	4	2	0	0	0	0.67152	1	4719	4719		9.544	2.4423	1	1729100	+		43295	25752	31720	31975	42232	42232					0.10893382668359664
RIQSKLKYT	9	Unmodified	_RIQSKLKYT_					0	0	0			REV__ENST00000524413.5_1_10:25310680-25310803:+|nuORF	REV__ENST00000524413.5_1_10:25310680-25310803:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	378.95831298828125	3	379.564391	1135.67134	0.16409	6.2283E-05	2.3812	0.00090381	2.5453	0.00096609	379.8993290476382	19.343	0.23279	19.343	19.238	19.471	0					6	4	2	0	0	0	0.76106	1	4728	4728		13.615	11.332	1	1729100	+		43296	25752	31720	31975	42233	42233					0.10893382668359664
RIRGPKLV	8	Unmodified	_RIRGPKLV_					0	0	0		ENST00000449500.1_1_20:62258612-62259712:+|nuORF	ENST00000449500.1_1_20:62258612-62259712:+|nuORF	ENST00000449500.1_1_20:62258612-62259712:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	469.0284423828125	2	469.816536	937.618519	-0.41328	-0.00019416	-0.93194	-0.00043784	-1.3452	-0.000632	469.8163363759978	147.9	0.32487	147.92	147.82	148.15	0.018692					23	12	3	0	0	0	0.972	1	57513	57513		0.79363	0	1	96526			43297	12059	31721	31976	42234	42234					0.14721469396204157
RIRILEQRLNR	11	Unmodified	_RIRILEQRLNR_					0	0	0		nc|ENSG00000159625|Q8IY82-2|DRC7;ENSG00000159625|ENST00000360716|DRC7	nc|ENSG00000159625|Q8IY82-2|DRC7	nc|ENSG00000159625|Q8IY82-2|DRC7	MULTI-MSMS	A375_MHC_IP_R1	1	734.3551025390625	2	733.954958	1465.89536	-0.76258	-0.0005597	1.4094	0.0010344	0.64677	0.0004747	733.9557064950677	130.23	0.30557	130.23	130.11	130.41	0					12	5	3	0	0	0	0.73833	1	50134	50134		0.96228	0	1	32720000			43298	6380	31722	31977	42235	42235					0.1810509082235967
RIRLEQARW	9	Unmodified	_RIRLEQARW_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	MULTI-MSMS	A375_MHC_IP_R1	1	410.30682373046875	3	409.907151	1226.69962	-0.13924	-5.7074E-05	-4.3426E-05	-1.7801E-08	-0.13928	-5.7092E-05	409.90725527289135	36.961	0.5038	36.961	36.695	37.198	0					24	9	3	0	0	0	0.28079	1	12396	12396		24.957	13.439	1	7494900			43299	3458	31723	31978	42236	42236					0.09534125368304558
RIRLEQARW	9	Unmodified	_RIRLEQARW_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	MULTI-MSMS	A375_MHC_IP_R2	2	410.306884765625	3	409.907151	1226.69962	-0.16292	-6.6782E-05	-0.50547	-0.0002072	-0.66839	-0.00027398	409.90705092894444	35.749	0.66268	36.512	36.283	36.946	0.76338					25	12	3	0	0	0	0.14858	1	12970	12970		53.317	26.093	1	7068800			43300	3458	31723	31978	42237	42237					0.09534125368304558
RIRPAVGW	8	Unmodified	_RIRPAVGW_					0	0	0		ENSG00000115318|ENST00000264094|LOXL3;ENST00000470907.6_1_2:74763585-74776752:-|nuORF	ENSG00000115318|ENST00000264094|LOXL3	ENSG00000115318|ENST00000264094|LOXL3	MULTI-SECPEP	A375_MHC_IP_R1	1	478.1852111816406	2	477.785236	953.555919	-0.52386	-0.00025029	0.11734	5.6063E-05	-0.40652	-0.00019423	477.7852593324337	40.213	0.51023	40.213	39.948	40.458	0					27	9	4	0	0	0	0.38164	1	13773	13773		67.035	32.848	1	15935000			43301	3301	31724	31979	42238	42238					0.07728323328024089
RIRRAESLY	9	Unmodified	_RIRRAESLY_					0	0	0			REV__ENST00000545653.5_1_5:39394498-39425099:-|nuORF	REV__ENST00000545653.5_1_5:39394498-39425099:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	582.734619140625	2	582.335821	1162.65709	-0.44337	-0.00025819	-1.4418	-0.00083958	-1.8851	-0.0010978	582.3348800357788	130.2	0.61072	130.2	130.01	130.62	0					27	11	3	0	0	0	0.72507	1	50087	50087		4.756	4.756	1	15996000	+		43302	25994	31725	31980	42239	42239					0.0822673024008509
RIRRAESLY	9	Unmodified	_RIRRAESLY_					0	0	0			REV__ENST00000545653.5_1_5:39394498-39425099:-|nuORF	REV__ENST00000545653.5_1_5:39394498-39425099:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	582.735107421875	2	582.335821	1162.65709	-0.4551	-0.00026502	-1.5372	-0.00089517	-1.9923	-0.0011602	582.335223226733	131.09	0.5061	131.09	130.92	131.43	0					15	9	3	0	0	0	0.72507	1	50578	50578		4.756	1.1595	1	2638800	+		43303	25994	31725	31980	42240	42240					0.0822673024008509
RIRRAESLY	9	Unmodified	_RIRRAESLY_					0	0	0			REV__ENST00000545653.5_1_5:39394498-39425099:-|nuORF	REV__ENST00000545653.5_1_5:39394498-39425099:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	582.335821	1162.65709	-0.4551	-0.00026502	-1.5372	-0.00089517	-1.9923	-0.0011602	582.335223226733	131.09	0.5061	131.09	130.92	131.43	0	-0.028682	0.00016193	NaN	4.756	15	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2638800	+		43304	25994	31725	31980							0.0822673024008509
RIRRAESLY	9	Unmodified	_RIRRAESLY_					0	0	0			REV__ENST00000545653.5_1_5:39394498-39425099:-|nuORF	REV__ENST00000545653.5_1_5:39394498-39425099:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	582.335821	1162.65709	-0.37677	-0.00021941	-1.7975	-0.0010467	-2.1742	-0.0012661	582.3350185274536	130.93	0.50774	131.15	130.91	131.41	0.21419	0.028682	-0.00014119	NaN	4.756	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3473900	+		43305	25994	31725	31980							0.0822673024008509
RIRRQVRI	8	Unmodified	_RIRRQVRI_					0	0	0			REV__ENST00000399413.3_1_17:7983135-7983387:+|nuORF	REV__ENST00000399413.3_1_17:7983135-7983387:+|nuORF	MSMS	A375_MHC_IP_R1	1	366.2927551269531	3	366.243986	1095.71013	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.556	1	49.556	49.056	50.056	0								0	0	0	0.16876	1	17529	17529		14.838	0	1		+		43306	24391	31726	31981	42241	42241					0.16610152813404966
RIRVIKKKKVI	11	Unmodified	_RIRVIKKKKVI_					0	0	0		ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	MSMS	A375_MHC_IP_R2	2	460.9493103027344	3	461.001163	1379.98166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.347	1	37.118	36.618	37.618	0.7709								0	0	0	0.16358	1	13243	13243		0.094841	0	1				43307	1902	31727	31982	42242	42242					0.30686702394996246
RIRVWHKRHFY	11	Unmodified	_RIRVWHKRHFY_					0	0	0			REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	MULTI-MSMS	A375_MHC_IP_R1	1	400.6292419433594	4	400.229831	1596.89022	-0.2119	-8.4809E-05	-0.58843	-0.00023551	-0.80033	-0.00032032	400.48014617120486	57.102	0.40786	57.102	56.855	57.263	0					17	7	3	0	0	0	0.73886	1	20474	20474		0.45452	0.35968	1	3671800	+		43308	24214	31728	31983	42243	42243					0.11564831750388294
RIRVWHKRHFY	11	Unmodified	_RIRVWHKRHFY_					0	0	0			REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	MULTI-SECPEP	A375_MHC_IP_R1	1	399.5860595703125	4	400.229831	1596.89022	-0.2119	-8.4809E-05	-0.58843	-0.00023551	-0.80033	-0.00032032	400.48014617120486	57.102	0.40786	57.102	56.855	57.263	0					17	7	3	0	0	0	1.0015	1	20465	20465		0	0	1	3671800	+		43309	24214	31728	31983	42244	42244					0.11564831750388294
RISEQTYQL	9	Unmodified	_RISEQTYQL_					0	0	0		ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	MULTI-MSMS	A375_MHC_IP_R2	2	569.6980590820312	2	569.29857	1136.58259	-0.2733	-0.00015559	-0.57589	-0.00032786	-0.84919	-0.00048344	569.2986545871722	42.348	0.45953	43.121	42.809	43.268	0.7724					13	8	2	0	0	0	0.19747	1	15790	15790		38.176	6.9072	1	2248000			43310	4828	31729	31984	42245	42245					0.019759226380301698
RISGVDRYY	9	Unmodified	_RISGVDRYY_					0	0	0		ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	MULTI-SECPEP	A375_MHC_IP_R1	1	565.1934814453125	2	564.793455	1127.57236	-0.38334	-0.00021651	0.35978	0.0002032	-0.023557	-1.3305E-05	564.7935888428692	31.489	0.60783	31.489	31.262	31.87	0					28	11	3	0	0	0	0.30133	1	10069	10069		43.982	29.144	1	24144000			43311	3954	31730	31985	42246	42246					0.013673597034767226
RISGVDRYY	9	Unmodified	_RISGVDRYY_					0	0	0		ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	MULTI-SECPEP	A375_MHC_IP_R2	2	376.9716491699219	3	376.864729	1127.57236	0.18355	6.9174E-05	-0.2887	-0.0001088	-0.10515	-3.9627E-05	376.86460383670965	30.769	0.65604	31.488	31.165	31.821	0.71857					25	12	3	0	0	0	0.37663	1	10822	10822		34.222	27.12	1	5574100			43312	3954	31730	31985	42247	42247					0.013673597034767226
RISGVDRYY	9	Unmodified	_RISGVDRYY_					0	0	0		ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	MULTI-SECPEP	A375_MHC_IP_R2	2	565.192626953125	2	564.793455	1127.57236	-0.4907	-0.00027715	-0.395	-0.00022309	-0.8857	-0.00050024	564.7933611754186	30.718	0.60505	31.437	31.216	31.821	0.71857					32	11	4	0	0	0	0.30133	1	10799	10799		51.415	20.779	1	25248000			43313	3954	31730	31985	42248	42248					0.013673597034767226
RISMQEIQTQ	10	Unmodified	_RISMQEIQTQ_					0	0	0		nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000124496|ENST00000695948|TRERF1;nc|ENSG00000124496|Q96PN7-2|TRERF1;nc|ENSG00000124496|Q96PN7-3|TRERF1;nc|ENSG00000124496|Q96PN7-4|TRERF1;nc|ENSG00000124496|Q96PN7-5|TRERF1	nc|ENSG00000124496|Q96PN7|TRERF1	nc|ENSG00000124496|Q96PN7|TRERF1	MSMS	A375_MHC_IP_R1	1	617.158935546875	2	617.316437	1232.61832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.381	1	19.381	18.881	19.881	0								0	0	0	0.15089	1	4772	4772		16.149	3.1066	1				43314	3907	31731	31986	42249	42249					0.011316368233792673
RISVRIHEY	9	Unmodified	_RISVRIHEY_					0	0	0		nc|ENSG00000166016|Q8N961-2|ABTB2;ENSG00000166016|ENST00000435224|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	MULTI-MSMS	A375_MHC_IP_R1	1	391.95611572265625	3	391.556007	1171.64619	-0.083812	-3.2817E-05	0.27991	0.0001096	0.1961	7.6783E-05	391.5560915964576	27.978	0.35238	27.978	27.786	28.138	0					14	6	3	0	0	0	0.30259	1	8585	8585		30.431	17.503	1	6149700			43315	7017	31732	31987	42250	42250					0.06723327865779538
RISVRIHEY	9	Unmodified	_RISVRIHEY_					0	0	0		nc|ENSG00000166016|Q8N961-2|ABTB2;ENSG00000166016|ENST00000435224|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	MULTI-MSMS	A375_MHC_IP_R2	2	391.9562683105469	3	391.556007	1171.64619	-0.16449	-6.4407E-05	0.41698	0.00016327	0.25249	9.8864E-05	391.5561690424506	27.241	0.30582	27.92	27.741	28.047	0.67857					10	5	2	0	0	0	0.37385	1	9302	9302		25.997	18.388	1	6014100			43316	7017	31732	31987	42251	42251					0.06723327865779538
RITAVRRVY	9	Unmodified	_RITAVRRVY_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	A375_MHC_IP_R1	1	378.96820068359375	3	378.568247	1132.68291	0.038121	1.4431E-05	0.041605	1.575E-05	0.079726	3.0182E-05	378.5682768396951	23.508	0.71206	23.508	23.33	24.042	0					21	13	2	0	0	0	0.35164	1	6471	6471		27.088	11.35	1	25458000			43317	8001	31733	31988	42252	42252					0.1218762448236248
RITPFLPNW	9	Unmodified	_RITPFLPNW_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-SECPEP	A375_MHC_IP_R1	1	572.7185668945312	2	572.319109	1142.62366	-0.029288	-1.6762E-05	-0.29126	-0.00016669	-0.32055	-0.00018346	572.3188644966967	111.82	0.91604	111.82	111.41	112.33	0					37	17	3	0	0	0	0.23894	1	40949	40949		47.594	29.448	1	7604900			43318	7077	31734	31989	42253	42253					0.05805728468158122
RITPFLPNW	9	Unmodified	_RITPFLPNW_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MSMS	A375_MHC_IP_R2	2	572.718994140625	2	572.319109	1142.62366	-0.092431	-5.29E-05	-0.092858	-5.3144E-05	-0.18529	-0.00010604	572.3189088821453	110.9	0.71207	111.64	111.24	111.96	0.73691					31	13	3	0	0	0	0.135	1	41787	41787		55.503	24.866	1	7081100			43319	7077	31734	31989	42254	42254					0.05805728468158122
RITPTRFGV	9	Unmodified	_RITPTRFGV_					0	0	0			REV__nc|ENSG00000185697|P10243-2|MYBL1	REV__nc|ENSG00000185697|P10243-2|MYBL1	MULTI-MSMS	A375_MHC_IP_R2	2	523.9287109375	2	523.808908	1045.60326	-0.51892	-0.00027182	-2.8451	-0.0014903	-3.3641	-0.0017621	523.8081703411369	102.23	0.15294	103	102.87	103.02	0.76428					4	2	2	0	0	0	0.64808	1	38703	38703		11.64	3.7301	1	367630	+		43320	21912	31735	31990	42255	42255					0.08228557808365622
RIVAALVGFL	10	Unmodified	_RIVAALVGFL_					0	0	0		nc|ENSG00000140691|Q96C12-2|ARMC5;ENSG00000140691|ENST00000268314|ARMC5;nc|ENSG00000140691|Q96C12-3|ARMC5;nc|ENSG00000140691|Q96C12-4|ARMC5	nc|ENSG00000140691|Q96C12-2|ARMC5	nc|ENSG00000140691|Q96C12-2|ARMC5	MULTI-SECPEP	A375_MHC_IP_R1	1	353.9619445800781	3	353.56221	1057.6648	-0.069963	-2.4736E-05	-0.17955	-6.3482E-05	-0.24951	-8.8218E-05	353.5621240164813	74.273	0.35451	74.273	74.045	74.4	0					11	6	2	0	0	0	0.94516	1	27085	27085		1.7423	1.7423	1	1077100			43321	5178	31736	31991	42256	42256					0.13827489507639257
RIVAIDERTEF	11	Unmodified	_RIVAIDERTEF_					0	0	0			REV__ENST00000588652.5_1_19:45854889-45860860:-|nuORF	REV__ENST00000588652.5_1_19:45854889-45860860:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	450.948486328125	3	450.245498	1347.71466	-0.62961	-0.00028348	-0.22835	-0.00010282	-0.85796	-0.00038629	450.24538252718156	21.482	0.60971	22.101	21.777	22.387	0.61932					35	11	4	0	0	0	0.73239	1	6729	6729		6.6235	2.2173	1	10456000	+		43322	17347	31737	31992	42257	42257					0.05471527654981401
RIVDLIKGQHL	11	Unmodified	_RIVDLIKGQHL_					0	0	0		ENST00000480898.1_22:24381698-24384231:-|nuORF	ENST00000480898.1_22:24381698-24384231:-|nuORF	ENST00000480898.1_22:24381698-24384231:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	431.6661071777344	3	431.266345	1290.7772	-0.12538	-5.4074E-05	-0.78777	-0.00033974	-0.91315	-0.00039381	431.2659503179551	59.698	0.50795	59.698	59.346	59.854	0					14	9	2	0	0	0	0.98407	1	21506	21506		15.467	10.268	1	1367800			43323	12505	31738	31993	42258	42258					0.1434471851384842
RIVDLIKGQHL	11	Unmodified	_RIVDLIKGQHL_					0	0	0		ENST00000480898.1_22:24381698-24384231:-|nuORF	ENST00000480898.1_22:24381698-24384231:-|nuORF	ENST00000480898.1_22:24381698-24384231:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	431.6658630371094	3	431.266345	1290.7772	-0.55922	-0.00024117	-0.46397	-0.00020009	-1.0232	-0.00044127	431.26593913709183	58.572	0.40736	59.321	59.083	59.491	0.74894					14	7	3	0	0	0	0.64767	1	22185	22185		19.615	8.55	1	1821800			43324	12505	31738	31993	42259	42259					0.1434471851384842
RIVEPYIAW	9	Unmodified	_RIVEPYIAW_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000485823.1_1_12:53279751-53279922:+|nuORF;ENST00000461513.1_1_17:49579856-49580498:-|nuORF;ENST00000397636.2_1_7:99737498-99738123:-|nuORF	ENSG00000147604|ENST00000352983|RPL7;ENST00000397636.2_1_7:99737498-99738123:-|nuORF	ENSG00000147604|ENST00000352983|RPL7	MULTI-SECPEP	A375_MHC_IP_R2	2	574.2186279296875	2	573.818941	1145.62333	-0.04848	-2.7819E-05	-0.45122	-0.00025892	-0.4997	-0.00028674	573.8183326323633	93.962	0.96288	94.707	94.412	95.375	0.74474					33	18	3	0	0	0	0.54812	1	35733	35733		31.268	23.979	1	3790100			43325	5695;11506	31739	31994	42260	42260					0.0563430874833557
RIVEPYIAW	9	Unmodified	_RIVEPYIAW_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000485823.1_1_12:53279751-53279922:+|nuORF;ENST00000461513.1_1_17:49579856-49580498:-|nuORF;ENST00000397636.2_1_7:99737498-99738123:-|nuORF	ENSG00000147604|ENST00000352983|RPL7;ENST00000397636.2_1_7:99737498-99738123:-|nuORF	ENSG00000147604|ENST00000352983|RPL7	MULTI-MATCH	A375_MHC_IP_R1	1		2	573.818941	1145.62333	-0.38101	-0.00021863	-0.074851	-4.2951E-05	-0.45586	-0.00026158	573.8190566304199	94.872	0.56079	94.872	94.497	95.058	0	0.082436	0.00018232	NaN	31.268	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4439100			43326	5695;11506	31739	31994							0.0563430874833557
RIVEPYVTW	9	Unmodified	_RIVEPYVTW_					0	0	0		ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1;nc|ENSG00000146223|Q6DKI1-2|RPL7L1;ENST00000462348.1_1_6:42848614-42854030:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	581.8016967773438	2	581.816399	1161.61824	-0.33388	-0.00019426	-0.29156	-0.00016964	-0.62545	-0.0003639	581.8161915814316	83.863	0.65804	83.863	83.583	84.241	0					42	12	4	0	0	0	0.135	1	30648	30648		55.503	26.421	1	83229000			43327	5610	31740	31995	42261	42261					0.04390004885704002
RIVEPYVTW	9	Unmodified	_RIVEPYVTW_					0	0	0		ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1;nc|ENSG00000146223|Q6DKI1-2|RPL7L1;ENST00000462348.1_1_6:42848614-42854030:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	581.62939453125	2	581.816399	1161.61824	-0.34215	-0.00019907	-0.2375	-0.00013818	-0.57966	-0.00033725	581.816208640575	83.083	0.7581	83.822	83.393	84.152	0.73962					38	14	3	0	0	0	0.14438	1	31515	31515		63.961	38.561	1	77827000			43328	5610	31740	31995	42262	42262					0.04390004885704002
RIVILKIAH	9	Unmodified	_RIVILKIAH_					0	0	0			REV__ENST00000521015.5_1_8:28047564-28047732:+|nuORF	REV__ENST00000521015.5_1_8:28047564-28047732:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1063.749267578125	1	1062.71461	1061.70733	0.17436	0.00018529	-3.9455	-0.004193	-3.7712	-0.0040077	1063.7118914372534	118.53	0.25352	118.53	118.42	118.68	0					5	4	2	0	0	0	0.75251	1	43598	43598		2.3027	0	1	43935000	+		43329	25713	31741	31996	42263	42263					0.17894884635893504
RIVTIIQKW	9	Unmodified	_RIVTIIQKW_					0	0	0		ENSG00000162814|ENST00000366933|SPATA17	ENSG00000162814|ENST00000366933|SPATA17	ENSG00000162814|ENST00000366933|SPATA17	MULTI-SECPEP	A375_MHC_IP_R1	1	579.263671875	2	578.863683	1155.71281	-0.38033	-0.00022016	0.32462	0.00018791	-0.055711	-3.2249E-05	578.8638272654505	66.332	0.45807	66.332	66.122	66.58	0					22	8	3	0	0	0	0.65623	1	24016	24016		23.79	15.88	1	6509900			43330	6599	31742	31997	42264	42264					0.14118563427700792
RIVTIIQKW	9	Unmodified	_RIVTIIQKW_					0	0	0		ENSG00000162814|ENST00000366933|SPATA17	ENSG00000162814|ENST00000366933|SPATA17	ENSG00000162814|ENST00000366933|SPATA17	MULTI-SECPEP	A375_MHC_IP_R2	2	579.2632446289062	2	578.863683	1155.71281	-0.33379	-0.00019322	-0.10794	-6.2483E-05	-0.44173	-0.0002557	578.8636276441218	65.311	0.50701	66.05	65.766	66.273	0.73811					23	9	3	0	0	0	0.53098	1	24743	24743		33.445	33.445	1	5487200			43331	6599	31742	31997	42265	42265					0.14118563427700792
RIWDPVLSV	9	Unmodified	_RIWDPVLSV_					0	0	0		ENST00000563229.5_1_15:74280912-74281173:-|nuORF;nc|ENSG00000067221|Q9UBI4-6|STOML1;nc|ENSG00000067221|Q9UBI4-4|STOML1;nc|ENSG00000067221|Q9UBI4-2|STOML1;nc|ENSG00000067221|Q9UBI4-5|STOML1;nc|ENSG00000067221|Q9UBI4-3|STOML1;ENSG00000067221|ENST00000541638|STOML1	ENST00000563229.5_1_15:74280912-74281173:-|nuORF	ENST00000563229.5_1_15:74280912-74281173:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	543.2107543945312	2	542.811116	1083.60768	-0.54054	-0.00029341	0.026177	1.4209E-05	-0.51437	-0.0002792	542.8110017527965	101.09	0.4558	101.09	100.89	101.34	0					16	8	3	0	0	0	0.47206	1	37171	37171		41.956	9.6501	1	1383500			43332	1433	31743	31998	42266	42266					0.06922022231265146
RIWRILEE	8	Unmodified	_RIWRILEE_					0	0	0		ENST00000334805.10_1_11:72492260-72504101:-|nuORF	ENST00000334805.10_1_11:72492260-72504101:-|nuORF	ENST00000334805.10_1_11:72492260-72504101:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	372.6427001953125	3	372.217102	1113.62948	0.40384	0.00015032	-0.82182	-0.00030589	-0.41798	-0.00015558	372.2169949240636	40.737	0.4049	40.737	40.458	40.863	0					10	7	2	0	0	0	0.972	1	14031	14031		6.2058	6.2058	1	1931000			43333	10798	31744	31999	42267	42267					0.0772082697985752
RIYDNLPEV	9	Unmodified	_RIYDNLPEV_					0	0	0		nc|nan|Q96M02-2|C10orf90;chr10:126464986-126503957|425|18.39|0.64|4.84|-|ENST00000432642|C10orf90,C10orf90;chr10:126461585-126464696|432|16.8|0.96|4.13|-|ENST00000432642|C10orf90,C10orf90;nc|nan|Q96M02|C10orf90;ENSG00000154493|ENST00000488181|C10orf90	nc|nan|Q96M02-2|C10orf90	nc|nan|Q96M02-2|C10orf90	MULTI-MSMS	A375_MHC_IP_R2	2	560.1954345703125	2	559.795663	1117.57677	-0.57722	-0.00032312	-0.065821	-3.6846E-05	-0.64304	-0.00035997	559.7957625628231	67.982	1.4717	68.717	68.358	69.83	0.73511					34	28	2	0	0	0	0.095445	1	25773	25773		63.961	16.212	1	5116800			43334	398	31745	32000	42268	42268					0.022688241263722375
RIYFRFEL	8	Unmodified	_RIYFRFEL_					0	0	0		ENSG00000102452|ENST00000251127|NALCN;nc|ENSG00000102452|Q8IZF0-2|NALCN;ENST00000470333.1_1_13:101833448-102051507:-|nuORF;NALCN|p.I927Tfs*7|1|0.09|ENSG00000102452|chr13:101104406-101104407|-/TATGGATAGTT|frameshift_variant;nc|ENSG00000102452|Q8IZF0-3|NALCN;ENST00000497170.5_1_13:101944713-102068675:-|nuORF	ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MULTI-SECPEP	A375_MHC_IP_R2	2	381.5875244140625	3	381.881831	1142.62366	-0.39819	-0.00015206	2.5031	0.00095591	2.105	0.00080385	382.2160552669751	20.362	0.56035	20.973	20.701	21.262	0.61029					11	10	2	0	0	0	0.97144	1	6233	6233		6.7232	0	1	1254700			43335	2380	31746	32001	42269	42269					0.05805728468203597
RIYIVRTSW	9	Unmodified	_RIYIVRTSW_					0	0	0		tr|U7SMB6|U7SMB6_FUSNUdTDP-4-dehydrorhamnosereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01944PE=3SV=1	tr|U7SMB6|U7SMB6_FUSNUdTDP-4-dehydrorhamnosereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01944PE=3SV=1	tr|U7SMB6|U7SMB6_FUSNUdTDP-4-dehydrorhamnosereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01944PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	398.9523010253906	3	398.564502	1192.67168	-0.27614	-0.00011006	0.97092	0.00038698	0.69478	0.00027691	398.89913319975466	25.565	0.25588	25.565	25.357	25.613	0					5	4	2	0	0	0	0.69317	1	7456	7456		7.609	0.97858	1	1301500			43336	29525	31747	32002	42270	42270					0.08304802388215649
RIYKYIHKV	9	Unmodified	_RIYKYIHKV_					0	0	0		ENSG00000052802|ENST00000261507|MSMO1;nc|ENSG00000052802|Q15800-2|MSMO1	ENSG00000052802|ENST00000261507|MSMO1	ENSG00000052802|ENST00000261507|MSMO1	MULTI-MSMS	A375_MHC_IP_R2	2	407.6484069824219	3	407.248514	1218.72371	-0.30433	-0.00012394	0.17324	7.0552E-05	-0.13109	-5.3384E-05	407.2486800291203	20.006	0.65945	20.617	20.298	20.958	0.61029					17	12	2	0	0	0	0.48411	1	6214	6214		20.581	16.052	1	914990			43337	1241	31748	32003	42271	42271					0.12309965801955514
RIYLRLYF	8	Unmodified	_RIYLRLYF_					0	0	0		ENST00000367210.2_2_1:203771301-203771436:+|nuORF	ENST00000367210.2_2_1:203771301-203771436:+|nuORF	ENST00000367210.2_2_1:203771301-203771436:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	381.5875244140625	3	381.89396	1142.66005	-0.39594	-0.00015121	-1.9994	-0.00076356	-2.3953	-0.00091477	382.2275893052625	20.205	0.30637	20.815	20.651	20.958	0.61029					7	5	2	0	0	0	0.97144	1	6233	6233		3.5965	0	1	1391800			43338	11082	31749	32004	42272	42272					0.0944260536487036
RIYSRIDRLEA	11	Unmodified	_RIYSRIDRLEA_					0	0	0		ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	MULTI-MSMS	A375_MHC_IP_R1	1	464.9967346191406	3	464.596642	1390.7681	-0.28443	-0.00013215	0.31988	0.00014862	0.035448	1.6469E-05	464.59679046450105	34.565	0.40485	34.565	34.303	34.708	0					21	7	3	0	0	0	0.55715	1	11383	11383		26.644	21.12	1	4687000			43339	8733	31750	32005	42273	42273					0.08834325157522471
RIYSRIDRLEA	11	Unmodified	_RIYSRIDRLEA_					0	0	0		ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	MULTI-MSMS	A375_MHC_IP_R2	2	465.33087158203125	3	464.596642	1390.7681	-1.0729	-0.00049847	0.52239	0.0002427	-0.55053	-0.00025577	464.5968778486678	33.556	0.40521	34.308	34.095	34.5	0.75225					20	7	3	0	0	0	0.48184	1	12051	12051		32.551	22.236	1	5938500			43340	8733	31750	32005	42274	42274					0.08834325157522471
RIYTCLQNM	9	Unmodified	_RIYTCLQNM_					0	0	0			REV__ENSG00000127804|ENST00000263092|METTL16	REV__ENSG00000127804|ENST00000263092|METTL16	MULTI-SECPEP	A375_MHC_IP_R2	2	381.5875244140625	3	381.187938	1140.54198	-0.34699	-0.00013227	-0.94438	-0.00035998	-1.2914	-0.00049225	381.18761502910576	20.04	0.55952	20.651	20.499	21.059	0.61029					13	10	2	0	0	0	0.76827	1	6233	6233		4.1895	0	1	1058300	+		43341	18430	31751	32006	42275	42275					-0.022664582775860254
RKAGVAHS	8	Unmodified	_RKAGVAHS_					0	0	0		nc|ENSG00000099917|Q96RN5-3|MED15;nc|ENSG00000099917|Q96RN5-2|MED15;ENSG00000099917|ENST00000263205|MED15	nc|ENSG00000099917|Q96RN5-3|MED15	nc|ENSG00000099917|Q96RN5-3|MED15	MULTI-MSMS	A375_MHC_IP_R1	1	413.6383972167969	2	413.238119	824.461684	0.27331	0.00011294	-0.053224	-2.1994E-05	0.22008	9.0947E-05	413.2380316960029	98.616	4.0038	98.616	97.288	101.29	0					164	78	3	0	0	0	0.7773	2	35855	35855;36072		4.756	0	1	9553500			43342	2093	31752	32007	42276;42277	42276					0.04243184505889985
RKAGVAHS	8	Unmodified	_RKAGVAHS_					0	0	0		nc|ENSG00000099917|Q96RN5-3|MED15;nc|ENSG00000099917|Q96RN5-2|MED15;ENSG00000099917|ENST00000263205|MED15	nc|ENSG00000099917|Q96RN5-3|MED15	nc|ENSG00000099917|Q96RN5-3|MED15	MULTI-MSMS	A375_MHC_IP_R1	1	413.6381530761719	2	413.238119	824.461684	0.30234	0.00012494	-0.066324	-2.7407E-05	0.23602	9.7531E-05	413.2380142838922	102.03	4.6644	102.03	99.825	104.49	0					178	91	3	0	0	0	0.77643	1	37919	37919		7.9102	0	1	8600500			43343	2093	31752	32007	42278	42278					0.04243184505889985
RKALTHILI	9	Unmodified	_RKALTHILI_					0	0	0			REV__ENSG00000099219|ENST00000339450|ERMP1	REV__ENSG00000099219|ENST00000339450|ERMP1	MSMS	A375_MHC_IP_R2	2	355.6009216308594	3	355.569476	1063.6866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.304	1	30.003	29.503	30.503	0.69872								0	0	0	0.15486	1	10220	10220		10.8	3.1906	1		+		43344	17013	31753	32008	42279	42279					0.15730294256240995
RKARRRRLA	9	Unmodified	_RKARRRRLA_					0	0	0		ENST00000361600.9_1_X:101907179-101908174:+|nuORF	ENST00000361600.9_1_X:101907179-101908174:+|nuORF	ENST00000361600.9_1_X:101907179-101908174:+|nuORF	MSMS	A375_MHC_IP_R2	2	394.7467346191406	3	394.930401	1181.76937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.463	1	1.922	1.422	2.422	0.45901								0	0	0	0.15486	1	474	474		0	0	1				43345	11047	31754	32009	42280	42280					0.18576048827617342
RKARRRRLA	9	Unmodified	_RKARRRRLA_					0	0	0		ENST00000361600.9_1_X:101907179-101908174:+|nuORF	ENST00000361600.9_1_X:101907179-101908174:+|nuORF	ENST00000361600.9_1_X:101907179-101908174:+|nuORF	MSMS	A375_MHC_IP_R2	2	394.74688720703125	3	394.930401	1181.76937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.279	1	12.823	12.323	13.323	0.54443								0	0	0	0.15486	1	3791	3791		0	0	1				43346	11047	31754	32009	42281	42281					0.18576048827617342
RKAVKIKLKKV	11	Unmodified	_RKAVKIKLKKV_					0	0	0		tr|U7SU22|U7SU22_FUSNUFlagellarmotorswitchproteinFliN-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01070PE=4SV=1	tr|U7SU22|U7SU22_FUSNUFlagellarmotorswitchproteinFliN-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01070PE=4SV=1	tr|U7SU22|U7SU22_FUSNUFlagellarmotorswitchproteinFliN-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01070PE=4SV=1	MSMS	A375_MHC_IP_R1	1	655.7766723632812	2	655.971557	1309.92856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.68	1	110.68	110.18	111.18	0								0	0	0	0.1636	1	40579	40579		0	0	1				43347	29734	31755	32010	42282	42282					0.28599324612332566
RKCLIYLPVS	10	Unmodified	_RKCLIYLPVS_					0	0	0			REV__ENST00000368178.3_1_1:157738776-157739058:-|nuORF	REV__ENST00000368178.3_1_1:157738776-157739058:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	596.75048828125	2	596.349551	1190.68455	-0.55611	-0.00033163	-1.5898	-0.00094809	-2.1459	-0.0012797	596.8489241433255	131.1	1.2204	131.31	130.91	132.13	0.21419					49	23	3	0	0	0	0.71944	1	51644	51644		3.5965	0.31518	1	8386400	+		43348	23987	31756	32011	42283	42283					0.09683497456103396
RKCPLRGG	8	Unmodified	_RKCPLRGG_					0	0	0		ENST00000416263.3_1_17:48944138-48944246:+|nuORF	ENST00000416263.3_1_17:48944138-48944246:+|nuORF	ENST00000416263.3_1_17:48944138-48944246:+|nuORF	MSMS	A375_MHC_IP_R1	1	443.679443359375	2	443.755621	885.49669	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.743	1	65.743	65.243	66.243	0								0	0	0	0.16876	1	23811	23811		9.3474	0.75416	1				43349	11688	31757	32012	42284	42284					0.04936104042212719
RKCSPRRRG	9	Unmodified	_RKCSPRRRG_					0	0	0		nc|ENSG00000130592|P33241-3|LSP1	nc|ENSG00000130592|P33241-3|LSP1	nc|ENSG00000130592|P33241-3|LSP1	MULTI-SECPEP	A375_MHC_IP_R1	1	557.7125854492188	2	558.319983	1114.62541	-0.55266	-0.00030856	-0.52824	-0.00029493	-1.0809	-0.00060348	558.3193708093678	38.538	0.30782	38.538	38.371	38.679	0					8	5	2	0	0	0	0.76827	1	13016	13016		10.824	2.2306	1	1638500			43350	14600	31758	32013	42285	42285					0.07268459005126715
RKCSPRRRG	9	Unmodified	_RKCSPRRRG_					0	0	0		nc|ENSG00000130592|P33241-3|LSP1	nc|ENSG00000130592|P33241-3|LSP1	nc|ENSG00000130592|P33241-3|LSP1	MULTI-MATCH	A375_MHC_IP_R2	2		2	558.319983	1114.62541	-1.0055	-0.00056141	-1.3872	-0.0007745	-2.3927	-0.0013359	558.319053273439	37.581	0.30766	38.352	38.171	38.479	0.7709	-0.093014	-0.0004391	NaN	10.824	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2155000			43351	14600	31758	32013							0.07268459005126715
RKDGKHLTL	9	Unmodified	_RKDGKHLTL_					0	0	0		ENSG00000138386|ENST00000337386|NAB1;nc|ENSG00000138386|Q13506-2|NAB1;NAB1|p.H272Y|1|0.43|ENSG00000138386|chr2:190659990-190659990|C/T|missense_variant	ENSG00000138386|ENST00000337386|NAB1	ENSG00000138386|ENST00000337386|NAB1	MULTI-MSMS	A375_MHC_IP_R1	1	356.94873046875	3	356.548852	1066.62473	-0.2302	-8.2079E-05	-0.18648	-6.6487E-05	-0.41668	-0.00014857	356.5487986376134	23.908	0.76071	23.908	23.687	24.447	0					27	14	4	0	0	0	0.135	1	6665	6665		44.392	17.304	1	31652000			43352	4988	31759	32014	42286	42286					0.09407942837083283
RKDGKHLTL	9	Unmodified	_RKDGKHLTL_					0	0	0		ENSG00000138386|ENST00000337386|NAB1;nc|ENSG00000138386|Q13506-2|NAB1;NAB1|p.H272Y|1|0.43|ENSG00000138386|chr2:190659990-190659990|C/T|missense_variant	ENSG00000138386|ENST00000337386|NAB1	ENSG00000138386|ENST00000337386|NAB1	MULTI-MSMS	A375_MHC_IP_R2	2	356.94873046875	3	356.548852	1066.62473	-0.54705	-0.00019505	-0.063258	-2.2555E-05	-0.61031	-0.0002176	356.548830632074	23.122	0.45856	23.752	23.47	23.928	0.63014					21	8	3	0	0	0	0.074562	1	7384	7384		55.235	22.337	1	30133000			43353	4988	31759	32014	42287	42287					0.09407942837083283
RKDIPTRI	8	Unmodified	_RKDIPTRI_					0	0	0			REV__GRXCR2|p.M136I|1|0.36|ENSG00000204928|chr5:145866657-145866657|C/T|missense_variant	REV__GRXCR2|p.M136I|1|0.36|ENSG00000204928|chr5:145866657-145866657|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	999.01025390625	1	998.61054	997.603263	0.20054	0.00020026	-0.14504	-0.00014484	0.055499	5.5422E-05	998.6104972616071	144.73	0.28932	144.75	144.69	144.98	0.021408					9	6	2	0	0	0	0.77839	1	56542	56542		0.79363	0	1	264160	+		43354	26720	31760	32015	42288	42288					0.10436557808350244
RKEEEKRKKL	10	Unmodified	_RKEEEKRKKL_					0	0	0			REV__nc|ENSG00000118733|Q96PB7-6|OLFM3	REV__nc|ENSG00000118733|Q96PB7-6|OLFM3	MULTI-MSMS	A375_MHC_IP_R2	2	672.8084106445312	2	672.409518	1342.80448	-0.70797	-0.00047605	-0.5725	-0.00038495	-1.2805	-0.000861	672.408957048124	131.58	2.3897	131.77	131.19	133.58	0.18954					135	46	5	0	0	0	0.72078	2	51601	51601;52046		2.9952	0	1	109320000	+		43355	27195	31761	32016	42289;42290	42289					0.14679202054207963
RKEEEKRKKL	10	Unmodified	_RKEEEKRKKL_					0	0	0			REV__nc|ENSG00000118733|Q96PB7-6|OLFM3	REV__nc|ENSG00000118733|Q96PB7-6|OLFM3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	672.409518	1342.80448	-0.86831	-0.00058386	-0.74305	-0.00049963	-1.6114	-0.0010835	672.4088665633152	131.7	2.127	131.7	131.07	133.2	0	-0.03478	-0.00011366	NaN	2.9952	131	41	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131820000	+		43356	27195	31761	32016							0.14679202054207963
RKEGRLYFFK	10	Unmodified	_RKEGRLYFFK_					0	0	0		ENST00000425595.5_1_12:54357896-54360399:-|nuORF;ENST00000424518.5_1_12:54357877-54360106:-|nuORF	ENST00000425595.5_1_12:54357896-54360399:-|nuORF	ENST00000425595.5_1_12:54357896-54360399:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	448.9901123046875	3	448.59094	1342.75099	-0.086511	-3.8808E-05	-1.2461	-0.00055899	-1.3326	-0.0005978	448.59027485783974	34.835	0.56056	34.835	34.657	35.218	0					18	10	2	0	0	0	0.71076	1	11530	11530		7.4771	1.2427	1	15803000			43357	11776	31762	32017	42291	42291					0.09332449342332438
RKEGRLYFFK	10	Unmodified	_RKEGRLYFFK_					0	0	0		ENST00000425595.5_1_12:54357896-54360399:-|nuORF;ENST00000424518.5_1_12:54357877-54360106:-|nuORF	ENST00000425595.5_1_12:54357896-54360399:-|nuORF	ENST00000425595.5_1_12:54357896-54360399:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	448.59094	1342.75099	-0.086511	-3.8808E-05	-1.2461	-0.00055899	-1.3326	-0.0005978	448.59027485783974	34.835	0.56056	34.835	34.657	35.218	0	0.11333	-0.00012697	NaN	7.4771	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15803000			43358	11776	31762	32017							0.09332449342332438
RKEKLRFL	8	Unmodified	_RKEKLRFL_					0	0	0		nc|ENSG00000088992|Q96BS2-2|TESC;ENSG00000088992|ENST00000335209|TESC;nc|ENSG00000088992|Q96BS2-3|TESC	nc|ENSG00000088992|Q96BS2-2|TESC	nc|ENSG00000088992|Q96BS2-2|TESC	MULTI-MSMS	A375_MHC_IP_R1	1	364.3013000488281	3	363.901226	1088.68185	0.36133	0.00013149	-0.097046	-3.5315E-05	0.26429	9.6174E-05	363.90114613698694	38.701	0.96886	38.701	38.371	39.34	0					46	18	4	0	0	0	0.16945	1	13093	13093		71.922	0.99361	1	61184000			43359	14495	31763	32018	42292	42292					0.14105410113461403
RKELELKFP	9	Unmodified	_RKELELKFP_					0	0	0		nc|ENSG00000119509|Q9Y283-2|INVS;ENSG00000119509|ENST00000262457|INVS	nc|ENSG00000119509|Q9Y283-2|INVS	nc|ENSG00000119509|Q9Y283-2|INVS	MSMS	A375_MHC_IP_R2	2	387.2835693359375	3	387.232641	1158.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.235	1	38.006	37.506	38.506	0.7709								0	0	0	0.15486	1	13611	13611		13.615	0.75892	1				43360	3599	31764	32019	42293	42293					0.10310266811143265
RKELVRKRVP	10	Unmodified	_RKELVRKRVP_					0	0	0			REV__ENSG00000144224|ENST00000272638|UBXN4	REV__ENSG00000144224|ENST00000272638|UBXN4	MSMS	A375_MHC_IP_R2	2	640.989990234375	2	640.917313	1279.82007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.541	1	85.277	84.777	85.777	0.73601								0	0	0	0.15451	1	32138	32138		6.2058	2.9245	1		+		43361	19413	31765	32020	42294	42294					0.1913553336194127
RKENPEFFW	9	Unmodified	_RKENPEFFW_					0	0	0		ENST00000470752.5_1_2:175488218-175494412:-|nuORF	ENST00000470752.5_1_2:175488218-175494412:-|nuORF	ENST00000470752.5_1_2:175488218-175494412:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	418.6087951660156	3	418.208495	1251.60366	0.17379	7.2679E-05	0.22179	9.2755E-05	0.39558	0.00016543	418.20858688565085	63.961	0.30365	63.961	63.837	64.141	0					9	5	2	0	0	0	0.52905	1	23146	23146		18.373	7.5736	1	1270700			43362	12345	31766	32021	42295	42295					-0.012080672624279032
RKENPEFFW	9	Unmodified	_RKENPEFFW_					0	0	0		ENST00000470752.5_1_2:175488218-175494412:-|nuORF	ENST00000470752.5_1_2:175488218-175494412:-|nuORF	ENST00000470752.5_1_2:175488218-175494412:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	627.2090454101562	2	626.809105	1251.60366	-0.5826	-0.00036518	0.43633	0.0002735	-0.14627	-9.1683E-05	626.8092781325211	64.002	1.0663	64.002	63.684	64.75	0					31	20	3	0	0	0	0.46045	1	23139	23139		36.127	10.728	1	4611600			43363	12345	31766	32021	42296	42296					-0.012080672624279032
RKENPEFFW	9	Unmodified	_RKENPEFFW_					0	0	0		ENST00000470752.5_1_2:175488218-175494412:-|nuORF	ENST00000470752.5_1_2:175488218-175494412:-|nuORF	ENST00000470752.5_1_2:175488218-175494412:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	418.208495	1251.60366	-0.013324	-5.5723E-06	-0.53206	-0.00022251	-0.54539	-0.00022809	418.2082516429126	63.087	0.60905	63.83	63.584	64.193	0.74263	-0.065823	-0.00064259	NaN	18.373	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1274100			43364	12345	31766	32021							-0.012080672624279032
RKEQGLVGKY	10	Unmodified	_RKEQGLVGKY_					0	0	0		nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000157388|Q01668-4|CACNA1D	nc|ENSG00000157388|Q01668-3|CACNA1D	nc|ENSG00000157388|Q01668-3|CACNA1D	MULTI-SECPEP	A375_MHC_IP_R2	2	393.62744140625	3	393.227779	1176.66151	-0.47186	-0.00018555	0.11435	4.4967E-05	-0.35751	-0.00014058	393.2278165455487	19.386	0.75889	19.989	19.733	20.492	0.60308					38	14	4	0	0	0	0.81668	1	5944	5944		27.088	7.1015	1	5364700			43365	6240	31767	32022	42297	42297					0.08024194662993978
RKFFDCKW	8	Unmodified	_RKFFDCKW_					0	0	0			REV__nc|ENSG00000005884|P26006-1|ITGA3	REV__nc|ENSG00000005884|P26006-1|ITGA3	MULTI-SECPEP	A375_MHC_IP_R2	2	377.6313781738281	3	377.1919	1128.55387	0.2488	9.3845E-05	1.8895	0.00071269	2.1383	0.00080654	377.1926328399555	27.266	0.45885	27.945	27.792	28.251	0.67857					13	8	2	0	0	0	0.972	1	9411	9411		9.3831	9.3831	1	1659000	+		43366	27089	31768	32023	42298	42298					-0.0052647347208676365
RKFFDCKW	8	Unmodified	_RKFFDCKW_					0	0	0			REV__nc|ENSG00000005884|P26006-1|ITGA3	REV__nc|ENSG00000005884|P26006-1|ITGA3	MULTI-MATCH	A375_MHC_IP_R1	1		3	377.1919	1128.55387	0.12663	4.7763E-05	2.5741	0.00097095	2.7008	0.0010187	377.1928383760129	27.943	0.45234	27.943	27.786	28.238	0	-0.0011098	0.00025582	NaN	9.3831	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1560300	+		43367	27089	31768	32023							-0.0052647347208676365
RKFGIVDSY	9	Unmodified	_RKFGIVDSY_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;nc|ENSG00000158486|Q8TD57-3|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-SECPEP	A375_MHC_IP_R2	2	362.4675598144531	3	362.197708	1083.57129	-0.48838	-0.00017689	-0.19805	-7.1734E-05	-0.68643	-0.00024862	362.19764723523616	52.049	0.5089	52.801	52.574	53.083	0.75225					18	9	3	0	0	0	0.69381	1	19531	19531		20.415	14.209	1	1741300			43368	6309	31769	32024	42299	42299					0.032851453345756454
RKFIKKRIIII	11	Unmodified	_RKFIKKRIIII_					0	0	0		ENST00000485134.1_1_1:158911778-158914889:+|nuORF;nc|ENSG00000163564|Q6K0P9-4|PYHIN1;nc|ENSG00000163564|Q6K0P9-3|PYHIN1;nc|ENSG00000163564|Q6K0P9-2|PYHIN1;ENSG00000163564|ENST00000368140|PYHIN1	ENST00000485134.1_1_1:158911778-158914889:+|nuORF	ENST00000485134.1_1_1:158911778-158914889:+|nuORF	MSMS	A375_MHC_IP_R2	2	714.560791015625	2	714.500481	1426.98641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.77	1	124.1	123.6	124.6	0.32969								0	0	0	0.1636	1	47672	47672		0	0	1				43369	6684	31770	32025	42300	42300					0.2899958653779322
RKFKLNVYKD	10	Unmodified	_RKFKLNVYKD_					0	0	0			REV__tr|U7SSH0|U7SSH0_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01631PE=3SV=1	REV__tr|U7SSH0|U7SSH0_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01631PE=3SV=1	MSMS	A375_MHC_IP_R2	2	655.7814331054688	2	655.882604	1309.75066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.62	1	140.66	140.16	141.16	0.04216								0	0	0	0.15596	1	55037	55037		1.4819	0.15237	1		+		43370	28429	31771	32026	42301	42301					0.10817029622512564
RKFRKANQKKQ	11	Unmodified	_RKFRKANQKKQ_					0	0	0			REV__ENSG00000225921|ENST00000451315|NOL7	REV__ENSG00000225921|ENST00000451315|NOL7	MSMS	A375_MHC_IP_R2	2	716.3292236328125	2	716.436401	1430.85825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.19	1	144.21	143.71	144.71	0.024414								0	0	0	0.16354	1	56329	56329		0.30703	0	1		+		43371	22718	31772	32027	42302	42302					0.16005419276575594
RKFVFRMYTRE	11	Unmodified	_RKFVFRMYTRE_					0	0	0			REV__ENST00000360409.7_1_2:206547732-206547855:+|nuORF	REV__ENST00000360409.7_1_2:206547732-206547855:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	512.313720703125	3	511.610006	1531.80819	-0.44505	-0.00022769	0.59079	0.00030225	0.14573	7.4558E-05	511.9447592016003	25.26	0.45783	25.26	25.053	25.511	0					18	8	3	0	0	0	1.0007	1	7282	7282		2.2527	0	1	2483100	+		43372	23892	31773	32028	42303	42303					0.06355548556416579
RKFVNRYIFR	10	Unmodified	_RKFVNRYIFR_					0	0	0			REV__COL6A6|p.S1850Y|1|0.27|ENSG00000206384|chr3:130649378-130649378|C/A|missense_variant	REV__COL6A6|p.S1850Y|1|0.27|ENSG00000206384|chr3:130649378-130649378|C/A|missense_variant	MSMS	A375_MHC_IP_R1	1	467.0078430175781	3	466.942084	1397.80442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.72	1	141.72	141.22	142.22	0								0	0	0	0.15591	1	54387	54387		0.69767	0.07084	1		+		43373	15833	31774	32029	42304	42304					0.12143246844880196
RKFVRRKGFVF	11	Unmodified	_RKFVRRKGFVF_					0	0	0			REV__ENST00000489942.1_1_6:3155224-3157697:-|nuORF	REV__ENST00000489942.1_1_6:3155224-3157697:-|nuORF	MSMS	A375_MHC_IP_R1	1	720.3394165039062	2	720.440955	1438.86736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.15	1	145.15	144.65	145.65	0								0	0	0	0.16353	1	55649	55649		0.35063	0	1		+		43374	25379	31775	32030	42305	42305					0.1654781263289351
RKGEYYVK	8	Unmodified	_RKGEYYVK_					0	0	0			REV__tr|U7SM20|U7SM20_FUSNUCelldivisioninhibitorSepFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02053PE=4SV=1	REV__tr|U7SM20|U7SM20_FUSNUCelldivisioninhibitorSepFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02053PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	522.2056274414062	2	521.787641	1041.56073	-0.5188	-0.0002707	1.1939	0.00062294	0.67505	0.00035223	521.7879556870887	61.407	1.5829	61.407	60.871	62.454	0					45	30	2	0	0	0	0.97021	1	22182	22182		6.7232	0	1	4393600	+		43375	28286	31776	32031	42306	42306					0.04161162680134112
RKGGGEKRLAT	11	Unmodified	_RKGGGEKRLAT_					0	0	0			REV__ERICH3|p.E1180K|1|0.39|ENSG00000178965|chr1:74572172-74572172|C/T|missense_variant	REV__ERICH3|p.E1180K|1|0.39|ENSG00000178965|chr1:74572172-74572172|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	391.6126403808594	3	391.566794	1171.67855	-0.099163	-3.8829E-05	0.094522	3.7012E-05	-0.0046408	-1.8172E-06	391.56683361666535	23.965	0.81339	23.965	23.483	24.296	0					22	15	2	0	0	0	0.73472	1	6643	6643		4.4062	0.21665	1	26426000	+		43376	26590	31777	32032	42307	42307					0.09958115268818801
RKGKPPKV	8	Unmodified	_RKGKPPKV_					0	0	0			REV__SLC39A10|p.L228P|1|0.32|ENSG00000196950|chr2:195680725-195680725|T/C|missense_variant	REV__SLC39A10|p.L228P|1|0.32|ENSG00000196950|chr2:195680725-195680725|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	910.2109985351562	1	909.599247	908.59197	-0.1895	-0.00017237	0.9642	0.00087703	0.77469	0.00070466	909.599618810792	148.15	0.31888	148.17	148.04	148.36	0.018692					11	8	2	0	0	0	0.972	1	57568	57568		0.69038	0	1	44437	+		43377	27994	31778	32033	42308	42308					0.1340178050488703
RKHFVGQIW	9	Unmodified	_RKHFVGQIW_					0	0	0		nc|ENSG00000165929|Q8N9U0-2|TC2N;ENSG00000165929|ENST00000435962|TC2N	nc|ENSG00000165929|Q8N9U0-2|TC2N	nc|ENSG00000165929|Q8N9U0-2|TC2N	MULTI-MSMS	A375_MHC_IP_R2	2	390.9465026855469	3	390.889209	1169.6458	-0.46665	-0.00018241	-3.1802	-0.0012431	-3.6469	-0.0014255	390.8880068326621	23.524	0.45495	24.155	23.828	24.283	0.63014					9	8	2	0	0	0	0.59266	2	7517	7517;7618		15.248	10.533	1	1073000			43378	7006	31779	32034	42309;42310	42309					0.06775952936618523
RKHITAKT	8	Unmodified	_RKHITAKT_					0	0	0			REV__ENST00000488285.1_1_9:130486913-130493681:+|nuORF	REV__ENST00000488285.1_1_9:130486913-130493681:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	954.9833374023438	1	954.584325	953.577048	0.048497	4.6294E-05	-0.086033	-8.2125E-05	-0.037536	-3.5831E-05	954.5841421045923	144.8	0.25479	144.82	144.69	144.94	0.021408					8	5	2	0	0	0	0.77839	1	56548	56548		0.79363	0	1	200050	+		43379	25346	31780	32035	42311	42311					0.09840288636871719
RKHKKHKHKHK	11	Unmodified	_RKHKKHKHKHK_					0	0	0			REV__ENSG00000112739|ENST00000337659|PRPF4B	REV__ENSG00000112739|ENST00000337659|PRPF4B	MULTI-MSMS	A375_MHC_IP_R1	1	746.8651123046875	2	746.465827	1490.9171	-0.87735	-0.00065491	0.14345	0.00010708	-0.7339	-0.00054783	746.4658100628151	148.91	2.6891	148.91	147.31	150	0					450	119	6	0	0	0	0.73934	1	56322	56322		0	0	1	9252800	+		43380	17752	31781	32036	42312	42312					0.19127940361568108
RKHKKHKHKHK	11	Unmodified	_RKHKKHKHKHK_					0	0	0			REV__ENSG00000112739|ENST00000337659|PRPF4B	REV__ENSG00000112739|ENST00000337659|PRPF4B	MULTI-MSMS	A375_MHC_IP_R1	1	497.8741455078125	3	497.979644	1490.9171	-0.73765	-0.00036734	0.12011	5.9814E-05	-0.61754	-0.00030752	497.9795954471369	148.85	2.7842	148.85	147.22	150	0					396	131	5	0	0	0	0.73934	1	57113	57113		0	0	1	4590300	+		43381	17752	31781	32036	42313	42313					0.19127940361568108
RKHKKHKHKHK	11	Unmodified	_RKHKKHKHKHK_					0	0	0			REV__ENSG00000112739|ENST00000337659|PRPF4B	REV__ENSG00000112739|ENST00000337659|PRPF4B	MULTI-SECPEP	A375_MHC_IP_R1	1	498.3789978027344	3	497.979644	1490.9171	-0.73765	-0.00036734	0.12011	5.9814E-05	-0.61754	-0.00030752	497.9795954471369	148.85	2.7842	148.85	147.22	150	0					396	131	5	0	0	0	1.0015	1	56329	56329		0	0	1	4590300	+		43382	17752	31781	32036	42314	42314					0.19127940361568108
RKHKKHKHKHK	11	Unmodified	_RKHKKHKHKHK_					0	0	0			REV__ENSG00000112739|ENST00000337659|PRPF4B	REV__ENSG00000112739|ENST00000337659|PRPF4B	MULTI-SECPEP	A375_MHC_IP_R1	1	746.834228515625	2	746.465827	1490.9171	-0.87735	-0.00065491	0.14345	0.00010708	-0.7339	-0.00054783	746.4658100628151	148.91	2.6891	148.91	147.31	150	0					450	119	6	0	0	0	1.0015	1	57057	57057		0	0	1	9252800	+		43383	17752	31781	32036	42315	42315					0.19127940361568108
RKHKKHKHKHK	11	Unmodified	_RKHKKHKHKHK_					0	0	0			REV__ENSG00000112739|ENST00000337659|PRPF4B	REV__ENSG00000112739|ENST00000337659|PRPF4B	MULTI-SECPEP	A375_MHC_IP_R2	2	746.8652954101562	2	746.465827	1490.9171	-0.67039	-0.00050042	0.00089723	6.6975E-07	-0.66949	-0.00049975	746.465698168617	148.91	2.683	148.93	147.33	150.01	0.018707					467	132	5	0	0	0	1.0015	1	57386	57386		0	0	1	7889000	+		43384	17752	31781	32036	42316	42316					0.19127940361568108
RKHSRHRR	8	Unmodified	_RKHSRHRR_					0	0	0		ENST00000474361.6_1_X:1719073-1720484:+|nuORF;ENSG00000197976|ENST00000313871|AKAP17A	ENST00000474361.6_1_X:1719073-1720484:+|nuORF	ENST00000474361.6_1_X:1719073-1720484:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	377.6313781738281	3	378.227218	1131.65982	0.18847	7.1285E-05	0.3438	0.00013003	0.53227	0.00020132	378.22738866964517	27.496	0.30433	28.174	28.047	28.351	0.67857					8	5	2	0	0	0	0.972	1	9411	9411		10.074	0	1	4050300			43385	9215	31782	32037	42317	42317					0.0992604320827013
RKIANKKLEWL	11	Unmodified	_RKIANKKLEWL_					0	0	0			REV__ENST00000438623.1_1_1:248726125-248726230:+|nuORF	REV__ENST00000438623.1_1_1:248726125-248726230:+|nuORF	MSMS	A375_MHC_IP_R1	1	700.002685546875	2	699.932628	1397.8507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.18	1	115.18	114.68	115.68	0								0	0	0	0.16334	1	42239	42239		1.3295	0	1		+		43386	24787	31783	32038	42318	42318					0.16769266956316642
RKIDYIDLRF	10	Unmodified	_RKIDYIDLRF_					0	0	0		tr|U7T1Q6|U7T1Q6_FUSNUCelldivisionproteinFtsQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00535PE=4SV=1	tr|U7T1Q6|U7T1Q6_FUSNUCelldivisionproteinFtsQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00535PE=4SV=1	tr|U7T1Q6|U7T1Q6_FUSNUCelldivisionproteinFtsQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00535PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	447.3221435546875	3	446.922467	1337.74557	-0.22499	-0.00010055	0.03051	1.3636E-05	-0.19448	-8.6919E-05	446.92237979923505	37.895	0.4598	37.895	37.658	38.118	0					13	8	2	0	0	0	0.93873	1	12865	12865		5.0475	4.9076	1	2854200			43387	29910	31784	32039	42319	42319					0.09020725759887682
RKIDYIDLRF	10	Unmodified	_RKIDYIDLRF_					0	0	0		tr|U7T1Q6|U7T1Q6_FUSNUCelldivisionproteinFtsQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00535PE=4SV=1	tr|U7T1Q6|U7T1Q6_FUSNUCelldivisionproteinFtsQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00535PE=4SV=1	tr|U7T1Q6|U7T1Q6_FUSNUCelldivisionproteinFtsQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00535PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		3	446.922467	1337.74557	-0.98724	-0.00044122	0.6661	0.00029769	-0.32114	-0.00014352	446.92286154780106	37.022	0.45592	37.793	37.564	38.02	0.7709	-0.050765	0.00058678	NaN	5.0475	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2072400			43388	29910	31784	32039							0.09020725759887682
RKIIEPKW	8	Unmodified	_RKIIEPKW_					0	0	0			REV__nc|ENSG00000171566|O43660-2|PLRG1	REV__nc|ENSG00000171566|O43660-2|PLRG1	MULTI-SECPEP	A375_MHC_IP_R2	2	534.6344604492188	2	535.329476	1068.6444	-1.1203	-0.00059974	-0.18265	-9.7777E-05	-1.303	-0.00069752	535.3295294846704	60.694	0.55603	61.439	61.263	61.819	0.74503					15	10	2	0	0	0	0.97021	1	22990	22990		15.847	7.937	1	3120700	+		43389	21079	31785	32040	42320	42320					0.11282318847838724
RKIKKALLI	9	Unmodified	_RKIKKALLI_					0	0	0			REV__tr|U7SS54|U7SS54_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01548PE=4SV=1	REV__tr|U7SS54|U7SS54_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01548PE=4SV=1	MSMS	A375_MHC_IP_R1	1	542.0275268554688	2	541.892244	1081.76993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.839	1	95.839	95.339	96.339	0								0	0	0	0.15486	1	35225	35225		2.3027	0	1		+		43390	28418	31786	32041	42321	42321					0.23232030704070894
RKIKKLLLN	9	Unmodified	_RKIKKLLLN_					0	0	0			REV__ENSG00000166888|ENST00000300134|STAT6	REV__ENSG00000166888|ENST00000300134|STAT6	MULTI-SECPEP	A375_MHC_IP_R1	1	375.25286865234375	3	375.932526	1124.77575	0.50837	0.00019111	-0.10362	-3.8956E-05	0.40475	0.00015216	375.9325084191652	44.256	0.51215	44.256	43.959	44.471	0					17	9	3	0	0	0	0.81724	1	15334	15334		0.20686	0.083992	1	1555400	+		43391	20713	31787	32042	42322	42322					0.21835129215764937
RKIRKKRKFIK	11	Unmodified	_RKIRKKRKFIK_					0	0	0			REV__PKDREJ|p.R1695K|1|0.26|ENSG00000130943|chr22:46258239-46258239|C/T|missense_variant	REV__PKDREJ|p.R1695K|1|0.26|ENSG00000130943|chr22:46258239-46258239|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	750.958251953125	2	751.019904	1500.02525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.34	1	129.34	128.84	129.84	0								0	0	0	0.1636	1	49734	49734		0	0	1		+		43392	27786	31788	32043	42323	42323					0.2952431189212348
RKIRSYSIL	9	Unmodified	_RKIRSYSIL_					0	0	0		chr5:151266913-151270150|100|13.41|0.39|5.1|+|0|TE_info:L1MC4a,L1MC4a_dup3311,L1,LINE,acceptor,+,151270150,151271608|GM2A,None|24	chr5:151266913-151270150|100|13.41|0.39|5.1|+|0|TE_info:L1MC4a,L1MC4a_dup3311,L1,LINE,acceptor,+,151270150,151271608|GM2A,None|24	chr5:151266913-151270150|100|13.41|0.39|5.1|+|0|TE_info:L1MC4a,L1MC4a_dup3311,L1,LINE,acceptor,+,151270150,151271608|GM2A,None|24	MULTI-MSMS	A375_MHC_IP_R1	1	379.6364440917969	3	379.236385	1134.68733	0.022063	8.3669E-06	0.25483	9.664E-05	0.27689	0.00010501	379.23640160510473	30.463	0.80833	30.463	30.2	31.009	0					34	15	3	0	0	0	0.39657	1	9659	9659		24.882	7.4389	1	7875300			43393	483	31789	32044	42324	42324					0.1253708890528742
RKIVIILIF	9	Unmodified	_RKIVIILIF_					0	0	0		ENST00000357214.5_1_1:35649661-35649919:-|nuORF	ENST00000357214.5_1_1:35649661-35649919:-|nuORF	ENST00000357214.5_1_1:35649661-35649919:-|nuORF	MSMS	A375_MHC_IP_R2	2	557.890380859375	2	557.88917	1113.76379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.023	1	82.766	82.266	83.266	0.74293								0	0	0	0.15486	1	31157	31157		0.6015	0	1				43394	10980	31790	32045	42325	42325					0.21145512472548944
RKKALEDPK	9	Unmodified	_RKKALEDPK_					0	0	0			REV__ENSG00000196141|ENST00000409140|SPATS2L	REV__ENSG00000196141|ENST00000409140|SPATS2L	MULTI-SECPEP	A375_MHC_IP_R1	1	362.96588134765625	3	362.220624	1083.64004	0.36739	0.00013308	2.195	0.00079509	2.5624	0.00092817	362.5570758919862	21.068	0.71231	21.068	20.742	21.454	0					20	13	2	0	0	0	0.50484	1	5498	5498		28.495	21.393	1	545000	+		43395	22163	31791	32046	42326	42326					0.10156809634258934
RKKDENRFFK	10	Unmodified	_RKKDENRFFK_					0	0	0		ENSG00000204616|ENST00000376734|TRIM31	ENSG00000204616|ENST00000376734|TRIM31	ENSG00000204616|ENST00000376734|TRIM31	MSMS	A375_MHC_IP_R2	2	684.6021728515625	2	684.38076	1366.74697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.52	1	100.28	99.782	100.78	0.76278								0	0	0	0.15591	1	37750	37750		1.6526	0.17072	1				43396	9467	31792	32047	42327	42327					0.07826359848627362
RKKEEKKEWRR	11	Unmodified	_RKKEEKKEWRR_					0	0	0			REV__ENST00000426911.2_1_X:136058956-136065632:-|nuORF	REV__ENST00000426911.2_1_X:136058956-136065632:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	525.6847534179688	3	524.974224	1571.90084	-0.59524	-0.00031248	-1.0822	-0.00056811	-1.6774	-0.00088059	525.3080550228403	81.1	0.66035	81.844	81.52	82.18	0.74473					25	12	3	0	0	0	1.0013	1	30900	30900		0.92553	0.080592	1	2171400	+		43397	24658	31793	32048	42328	42328					0.13776769614150908
RKKEELVR	8	Unmodified	_RKKEELVR_					0	0	0		nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	MULTI-MSMS	A375_MHC_IP_R2	2	353.6107482910156	3	353.220735	1056.64038	-0.17107	-6.0426E-05	-0.12548	-4.4322E-05	-0.29655	-0.00010475	353.2206667487862	42.108	0.56207	42.88	42.605	43.167	0.77259					23	10	3	0	0	0	0.75801	1	15577	15577		18.146	3.741	1	11118000			43398	3212	31794	32049	42329	42329					0.11432229354136325
RKKELNYTLEY	11	Unmodified	_RKKELNYTLEY_					0	0	0			REV__ENST00000416636.2_1_7:23624683-23625604:-|nuORF	REV__ENST00000416636.2_1_7:23624683-23625604:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	728.2540893554688	2	728.893366	1455.77218	-0.76774	-0.0005596	-0.65671	-0.00047867	-1.4244	-0.0010383	728.8921328495346	90.535	0.50743	90.535	90.184	90.692	0					12	9	2	0	0	0	0.94168	1	33156	33156		20.415	15.518	1	799270	+		43399	21406	31795	32050	42330	42330					0.06252369860567342
RKKELNYTLEY	11	Unmodified	_RKKELNYTLEY_					0	0	0			REV__ENST00000416636.2_1_7:23624683-23625604:-|nuORF	REV__ENST00000416636.2_1_7:23624683-23625604:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	728.893366	1455.77218	-0.70797	-0.00051603	0.32433	0.0002364	-0.38364	-0.00027963	728.8938997495834	89.839	0.25718	90.571	90.493	90.751	0.7318	0.017938	0.00033735	NaN	20.415	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1615400	+		43400	21406	31795	32050							0.06252369860567342
RKKFLVEREHL	11	Unmodified	_RKKFLVEREHL_					0	0	0		PAPPA2|p.S33F|1|0.71|ENSG00000116183|chr1:176556420-176556420|C/T|missense_variant	PAPPA2|p.S33F|1|0.71|ENSG00000116183|chr1:176556420-176556420|C/T|missense_variant	PAPPA2|p.S33F|1|0.71|ENSG00000116183|chr1:176556420-176556420|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	486.0237731933594	3	485.624532	1453.85177	-0.63417	-0.00030797	-0.95787	-0.00046516	-1.592	-0.00077313	485.9583231216395	30.317	0.50731	31.035	30.759	31.266	0.71857					26	9	4	0	0	0	0.73016	1	10646	10646		10.315	7.8804	1	6788100			43401	15109	31796	32051	42331	42331					0.14299481325224406
RKKIIRRLYLK	11	Unmodified	_RKKIIRRLYLK_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MSMS	A375_MHC_IP_R2	2	743.9855346679688	2	744.006462	1485.99837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.11	1	128.36	127.86	128.86	0.25333								0	0	0	0.1636	1	50287	50287		0	0	1				43402	5930	31797	32052	42332	42332					0.27481203280990485
RKKIRKKELRK	11	Unmodified	_RKKIRKKELRK_					0	0	0			REV__ENSG00000198873|ENST00000392870|GRK5	REV__ENSG00000198873|ENST00000392870|GRK5	MSMS	A375_MHC_IP_R1	1	494.90704345703125	3	495.007088	1481.99943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.51	1	50.51	50.01	51.01	0								0	0	0	0.1636	1	17896	17896		0	0	1		+		43403	22435	31798	32053	42333	42333					0.27771417649864816
RKKITKAKA	9	Unmodified	_RKKITKAKA_					0	0	0			REV__MYL9|p.T11I|1|0.22|ENSG00000101335|chr20:36544916-36544916|C/T|missense_variant	REV__MYL9|p.T11I|1|0.22|ENSG00000101335|chr20:36544916-36544916|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	522.7553100585938	2	522.356025	1042.6975	-0.85448	-0.00044634	-0.38077	-0.0001989	-1.2352	-0.00064524	522.3556881698463	147.7	0.24203	147.7	147.6	147.85	0					34	20	2	0	0	0	0.7724	1	56419	56419		0.52476	0	1	243270	+		43404	27063	31799	32054	42334	42334					0.17785696630494385
RKKITKAKA	9	Unmodified	_RKKITKAKA_					0	0	0			REV__MYL9|p.T11I|1|0.22|ENSG00000101335|chr20:36544916-36544916|C/T|missense_variant	REV__MYL9|p.T11I|1|0.22|ENSG00000101335|chr20:36544916-36544916|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	522.356025	1042.6975	-0.85448	-0.00044634	-0.38077	-0.0001989	-1.2352	-0.00064524	522.3556881698463	147.7	0.24203	147.7	147.6	147.85	0	-0.011962	-0.00011876	NaN	0.52476	34	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243270	+		43405	27063	31799	32054							0.17785696630494385
RKKITKAKA	9	Unmodified	_RKKITKAKA_					0	0	0			REV__MYL9|p.T11I|1|0.22|ENSG00000101335|chr20:36544916-36544916|C/T|missense_variant	REV__MYL9|p.T11I|1|0.22|ENSG00000101335|chr20:36544916-36544916|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	522.356025	1042.6975	-0.3878	-0.00020257	0.46749	0.0002442	0.079697	4.163E-05	522.3556040582669	147.7	0.36526	147.72	147.53	147.9	0.019913	0.011962	0.00076743	NaN	0.52476	59	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195220	+		43406	27063	31799	32054							0.17785696630494385
RKKKEKKKKKK	11	Unmodified	_RKKKEKKKKKK_					0	0	0			REV__ENST00000360264.7_1_7:101893260-101893380:+|nuORF	REV__ENST00000360264.7_1_7:101893260-101893380:+|nuORF	MSMS	A375_MHC_IP_R1	1	486.34259033203125	3	486.343588	1456.00894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.28	1	134.28	133.78	134.78	0								0	0	0	0.1636	1	51783	51783		0	0	1		+		43407	23791	31800	32055	42335	42335					0.2991718593536916
RKKKEKKKKKK	11	Unmodified	_RKKKEKKKKKK_					0	0	0			REV__ENST00000360264.7_1_7:101893260-101893380:+|nuORF	REV__ENST00000360264.7_1_7:101893260-101893380:+|nuORF	MSMS	A375_MHC_IP_R2	2	728.9552612304688	2	729.011744	1456.00894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.17	1	103.93	103.43	104.43	0.76428								0	0	0	0.1636	1	39075	39075		0	0	1		+		43408	23791	31800	32055	42336	42336					0.2991718593536916
RKKKEKKKKKK	11	Unmodified	_RKKKEKKKKKK_					0	0	0			REV__ENST00000360264.7_1_7:101893260-101893380:+|nuORF	REV__ENST00000360264.7_1_7:101893260-101893380:+|nuORF	MSMS	A375_MHC_IP_R2	2	486.3429870605469	3	486.343588	1456.00894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.25	1	134.39	133.89	134.89	0.13901								0	0	0	0.1636	1	52811	52811		0	0	1		+		43409	23791	31800	32055	42337	42337					0.2991718593536916
RKKKEKKQYRR	11	Unmodified	_RKKKEKKQYRR_					0	0	0			REV__ENST00000282964.5_1_21:21112145-21112373:+|nuORF	REV__ENST00000282964.5_1_21:21112145-21112373:+|nuORF	MSMS	A375_MHC_IP_R2	2	774.8833618164062	2	774.483882	1546.95321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.34	1	144.36	143.86	144.86	0.024414								0	0	0	0.1636	1	56384	56384		0	0	1		+		43410	23326	31801	32056	42338	42338					0.20161352747777528
RKKKGRKILKL	11	Unmodified	_RKKKGRKILKL_					0	0	0		TTC26|p.P28L|1|0.24|ENSG00000105948|chr7:139134734-139134734|C/T|missense_variant	TTC26|p.P28L|1|0.24|ENSG00000105948|chr7:139134734-139134734|C/T|missense_variant	TTC26|p.P28L|1|0.24|ENSG00000105948|chr7:139134734-139134734|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	456.6689758300781	3	456.661029	1366.96126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.788	1	41.788	41.288	42.288	0								0	0	0	0.16358	1	14448	14448		0.094841	0.094841	1				43411	30092	31802	32057	42339	42339					0.29245531735227814
RKKKKIKT	8	Unmodified	_RKKKKIKT_					0	0	0		ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	MSMS	A375_MHC_IP_R1	1	515.1790161132812	2	515.366393	1028.71823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.231	1	23.231	22.731	23.731	0								0	0	0	0.16876	1	6344	6344		0	0	1				43412	3033	31803	32058	42340	42340					0.20502287010185682
RKKKKKFK	8	Unmodified	_RKKKKKFK_					0	0	0		ENST00000216797.9_1_14:35871071-35871197:-|nuORF	ENST00000216797.9_1_14:35871071-35871197:-|nuORF	ENST00000216797.9_1_14:35871071-35871197:-|nuORF	MSMS	A375_MHC_IP_R1	1	364.5086669921875	3	364.257232	1089.74987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.901	1	17.901	17.401	18.401	0								0	0	0	0.16876	1	4226	4226		0	0	1				43413	10099	31804	32059	42341	42341					0.2085827976411565
RKKKKKKKG	9	Unmodified	_RKKKKKKKG_					0	0	0			REV__ENST00000244745.3_2_6:21594329-21594497:+|nuORF;REV__ENST00000480171.7_1_2:159519375-159537186:+|nuORF	REV__ENST00000244745.3_2_6:21594329-21594497:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	565.6801147460938	2	564.906217	1127.79788	-0.31906	-0.00018024	-0.64788	-0.00036599	-0.96694	-0.00054623	564.9048518645723	81.885	0.30387	81.885	81.657	81.961	0					7	5	2	0	0	0	0.81896	1	29847	29847		0	0	1	661210	+		43414	23106;19414	31805	32060	42342	42342					0.23909353684143753
RKKKKKKKKEP	11	Unmodified	_RKKKKKKKKEP_					0	0	0			REV__ENSG00000055044|ENST00000264279|NOP58	REV__ENSG00000055044|ENST00000264279|NOP58	MSMS	A375_MHC_IP_R2	2	713.80615234375	2	713.490645	1424.96674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.54	1	136.65	136.15	137.15	0.11134								0	0	0	0.16355	1	53627	53627		0.26902	0	1		+		43415	16411	31806	32061	42343	42343					0.27125210526992305
RKKKKKKKKHR	11	Unmodified	_RKKKKKKKKHR_					0	0	0			REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MSMS	A375_MHC_IP_R2	2	747.0216674804688	2	747.022978	1492.0314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.4	1	136.51	136.01	137.01	0.11134								0	0	0	0.1636	1	53581	53581		0	0	1		+		43416	17443	31807	32062	42344	42344					0.305068301236588
RKKKKKKKKKG	11	Unmodified	_RKKKKKKKKKG_					0	0	0			REV__nc|ENSG00000111142|P50579-3|METAP2	REV__nc|ENSG00000111142|P50579-3|METAP2	MSMS	A375_MHC_IP_R1	1	692.796875	2	693.00118	1383.98781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.535	1	72.535	72.035	73.035	0								0	0	0	0.1636	1	26391	26391		0	0	1		+		43417	17651	31808	32063	42345	42345					0.3111722062651552
RKKKKKKKQSL	11	Unmodified	_RKKKKKKKQSL_					0	0	0			REV__AluSc8_dup19793|chr19:3540086-3540259:-|1.814371482394331|0.3176790011739988|2.51|472.0|5|2|sense	REV__AluSc8_dup19793|chr19:3540086-3540259:-|1.814371482394331|0.3176790011739988|2.51|472.0|5|2|sense	MSMS	A375_MHC_IP_R2	2	700.8836059570312	2	700.48282	1398.95109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.3	1	144.32	143.82	144.82	0.024414								0	0	0	0.1636	1	56369	56369		0	0	1		+		43418	15370	31809	32064	42346	42346					0.26756924009987415
RKKKKKKL	8	Unmodified	_RKKKKKKL_					0	0	0		nc|ENSG00000114923|P48751-2|SLC4A3;ENSG00000114923|ENST00000358055|SLC4A3;nc|ENSG00000114923|P48751-3|SLC4A3	REV__AluJb_dup107864|chr17:42999154-42999315:-|5.019722437187728|0.0002278324850216|14.43|472.0|4|2|sense	REV__AluJb_dup107864|chr17:42999154-42999315:-|5.019722437187728|0.0002278324850216|14.43|472.0|4|2|sense	MULTI-SECPEP	A375_MHC_IP_R2	2	529.2072143554688	2	528.890035	1055.76552	-0.62927	-0.00033282	2.4369	0.0012888	1.8076	0.00095603	529.3918037692717	80.833	0.15413	81.578	81.468	81.622	0.74474					4	2	2	0	0	0	0.972	1	30668	30668		0	0	1	591580			43419	3257	31810	32065	42347	42347					0.23986566281178057
RKKKKKKSV	9	Unmodified	_RKKKKKKSV_					0	0	0			REV__AluSz_dup67474|chr12:55959957-55960240:+|1.02846226366399|0.0273165001202647|5.23|410.0|4|1|sense	REV__AluSz_dup67474|chr12:55959957-55960240:+|1.02846226366399|0.0273165001202647|5.23|410.0|4|1|sense	MSMS	A375_MHC_IP_R1	1	377.59405517578125	3	377.267909	1128.7819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.15	1	141.15	140.65	141.65	0								0	0	0	0.15486	1	54189	54189		0.23584	0	1		+		43420	15381	31811	32066	42348	42348					0.22265647447261472
RKKKKKKSV	9	Unmodified	_RKKKKKKSV_					0	0	0			REV__AluSz_dup67474|chr12:55959957-55960240:+|1.02846226366399|0.0273165001202647|5.23|410.0|4|1|sense	REV__AluSz_dup67474|chr12:55959957-55960240:+|1.02846226366399|0.0273165001202647|5.23|410.0|4|1|sense	MSMS	A375_MHC_IP_R2	2	377.5938415527344	3	377.267909	1128.7819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.25	1	141.29	140.79	141.79	0.04216								0	0	0	0.15486	1	55257	55257		0.23584	0	1		+		43421	15381	31811	32066	42349	42349					0.22265647447261472
RKKKKRKRKGH	11	Unmodified	_RKKKKRKRKGH_					0	0	0			REV__ENSG00000055483|ENST00000449938|USP36	REV__ENSG00000055483|ENST00000449938|USP36	MSMS	A375_MHC_IP_R1	1	725.8389892578125	2	725.489302	1448.96405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.97	1	122.97	122.47	123.47	0								0	0	0	0.16353	1	45885	45885		0.35063	0.081612	1		+		43422	16414	31812	32067	42350	42350					0.2575279991269781
RKKKKRTKALK	11	Unmodified	_RKKKKRTKALK_					0	0	0			REV__UGT2B17|p.G524R|1|0.25|ENSG00000197888|chr4:68537648-68537648|C/T|missense_variant	REV__UGT2B17|p.G524R|1|0.25|ENSG00000197888|chr4:68537648-68537648|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	692.9747314453125	2	692.982987	1383.95142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.913	1	91.913	91.413	92.413	0								0	0	0	0.1636	1	33774	33774		0	0	1		+		43423	28943	31813	32068	42351	42351					0.2748034372982602
RKKKRRKRKKE	11	Unmodified	_RKKKRRKRKKE_					0	0	0		ENSG00000128602|ENST00000249373|SMO	ENSG00000128602|ENST00000249373|SMO	ENSG00000128602|ENST00000249373|SMO	MSMS	A375_MHC_IP_R1	1	771.0218505859375	2	771.020966	1540.02738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.08	1	109.08	108.58	109.58	0								0	0	0	0.16355	1	40013	40013		0.26902	0	1				43424	4152	31814	32069	42352	42352					0.2789674062994436
RKKKRRRTQLA	11	Unmodified	_RKKKRRRTQLA_					0	0	0			REV__nc|ENSG00000133316|Q6RFH5-2|WDR74	REV__nc|ENSG00000133316|Q6RFH5-2|WDR74	MSMS	A375_MHC_IP_R1	1	720.9103393554688	2	720.970942	1439.92733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.92	1	147.92	147.42	148.42	0								0	0	0	0.1636	1	56499	56499		0	0	1		+		43425	18717	31815	32070	42353	42353					0.2249650329617907
RKKKVKKL	8	Unmodified	_RKKKVKKL_					0	0	0			REV__ENSG00000128908|ENST00000648947|INO80	REV__ENSG00000128908|ENST00000648947|INO80	MSMS	A375_MHC_IP_R1	1	514.6685791015625	2	514.376761	1026.73897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.919	1	75.919	75.419	76.419	0								0	0	0	0.16876	1	27665	27665		0.79363	0	1		+		43426	18474	31816	32071	42354	42354					0.22666877389838191
RKKKYDYDLRR	11	Unmodified	_RKKKYDYDLRR_					0	0	0			REV__nc|ENSG00000140600|Q99963-2|SH3GL3	REV__nc|ENSG00000140600|Q99963-2|SH3GL3	MULTI-SECPEP	A375_MHC_IP_R1	1	385.2585754394531	4	385.973125	1539.86339	0.066832	2.5795E-05	-0.12466	-4.8116E-05	-0.057831	-2.2321E-05	385.9729815760806	19.302	0.23279	19.302	19.238	19.471	0					5	4	2	0	0	0	1.0012	1	4835	4835		0.36667	0.037403	1	4114400	+		43427	19225	31817	32072	42355	42355					0.11505678348544279
RKKLKLPIGK	10	Unmodified	_RKKLKLPIGK_					0	0	0		ENST00000489023.5_1_2:210693994-210832362:+|nuORF;nc|ENSG00000144406|Q8N2C7-2|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80	ENST00000489023.5_1_2:210693994-210832362:+|nuORF	ENST00000489023.5_1_2:210693994-210832362:+|nuORF	MSMS	A375_MHC_IP_R1	1	394.5628662109375	3	394.279926	1179.81795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.947	1	81.947	81.447	82.447	0								0	0	0	0.15629	1	29954	29954		0.13989	0	1				43428	12628	31818	32073	42356	42356					0.23523104624109692
RKKLKPPTPWG	11	Unmodified	_RKKLKPPTPWG_					0	0	0		ENSG00000120318|ENST00000239440|ARAP3;nc|ENSG00000120318|Q8WWN8-2|ARAP3;ENST00000512390.1_1_5:141033519-141041645:-|nuORF	ENSG00000120318|ENST00000239440|ARAP3	ENSG00000120318|ENST00000239440|ARAP3	MSMS	A375_MHC_IP_R2	2	654.3004150390625	2	654.400964	1306.78738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.06	1	145.09	144.59	145.59	0.021408								0	0	0	0.16334	1	56646	56646		1.3295	0.92882	1				43429	3658	31819	32074	42357	42357					0.1462532623907009
RKKLKRKKKW	10	Unmodified	_RKKLKRKKKW_					0	0	0		FCGR1A|p.E316K|1|0.29|ENSG00000150337|chr1:149791338-149791338|G/A|missense_variant	FCGR1A|p.E316K|1|0.29|ENSG00000150337|chr1:149791338-149791338|G/A|missense_variant	FCGR1A|p.E316K|1|0.29|ENSG00000150337|chr1:149791338-149791338|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	699.9832153320312	2	699.980247	1397.94594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.282	1	71.282	70.782	71.782	0								0	0	0	0.15628	1	25894	25894		0.45834	0.10771	1				43430	13989	31820	32075	42358	42358					0.262886649380107
RKKLLQLKKKY	11	Unmodified	_RKKLLQLKKKY_					0	0	0		ENST00000441170.1_1_4:118496697-118497264:-|nuORF	ENST00000441170.1_1_4:118496697-118497264:-|nuORF	ENST00000441170.1_1_4:118496697-118497264:-|nuORF	MSMS	A375_MHC_IP_R2	2	723.42919921875	2	723.487571	1444.96059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.72	1	129.94	129.44	130.44	0.2142								0	0	0	0.1636	1	50979	50979		0	0	1				43431	11980	31821	32076	42359	42359					0.25590692295486406
RKKRIEKPRRF	11	Unmodified	_RKKRIEKPRRF_					0	0	0		ENST00000433877.6_1_12:122990076-123005058:-|nuORF;nc|ENSG00000111011|Q7L4I2-2|RSRC2;RSRC2|p.G373Lfs*31|1|0.07|ENSG00000111011|chr12:122506842-122506843|-/AAATCTCCACCTGAAAATTCCGCAAAAAG|frameshift_variant;ENSG00000111011|ENST00000331738|RSRC2	ENST00000433877.6_1_12:122990076-123005058:-|nuORF	ENST00000433877.6_1_12:122990076-123005058:-|nuORF	MSMS	A375_MHC_IP_R1	1	757.4810791015625	2	757.481143	1512.94773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.66	1	104.66	104.16	105.16	0								0	0	0	0.1636	1	38429	38429		0	0	1				43432	2961	31822	32077	42360	42360					0.2117767395593546
RKKRIKRAIFY	11	Unmodified	_RKKRIKRAIFY_					0	0	0			REV__ENSG00000118298|ENST00000369111|CA14	REV__ENSG00000118298|ENST00000369111|CA14	MULTI-SECPEP	A375_MHC_IP_R2	2	494.3117980957031	3	493.652533	1477.93577	-0.39109	-0.00019306	0.54546	0.00026927	0.15436	7.6203E-05	493.9866152828223	87.333	0.40443	88.066	87.712	88.117	0.733					12	7	2	0	0	0	1.0011	1	33213	33213		1.3296	0.92138	1	1250900	+		43433	15664	31823	32078	42361	42361					0.21592057212797044
RKKRLHKRKKR	11	Unmodified	_RKKRLHKRKKR_					0	0	0			REV__ENSG00000204560|ENST00000376442|DHX16	REV__ENSG00000204560|ENST00000376442|DHX16	MSMS	A375_MHC_IP_R1	1	767.405029296875	2	767.523676	1533.0328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.26	1	127.26	126.76	127.76	0								0	0	0	0.1636	1	48721	48721		0	0	1		+		43434	22524	31824	32079	42362	42362					0.2876046421240517
RKKRLHKRKKR	11	Unmodified	_RKKRLHKRKKR_					0	0	0			REV__ENSG00000204560|ENST00000376442|DHX16	REV__ENSG00000204560|ENST00000376442|DHX16	MSMS	A375_MHC_IP_R2	2	767.8260498046875	2	767.523676	1533.0328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.557	1	93.296	92.796	93.796	0.73902								0	0	0	0.1636	1	35198	35198		0	0	1		+		43435	22524	31824	32079	42363	42363					0.2876046421240517
RKKRRLKKRIF	11	Unmodified	_RKKRRLKKRIF_					0	0	0		ENST00000573539.5_1_17:3442880-3458098:-|nuORF;nc|ENSG00000167723|Q8NET8-3|TRPV3;ENSG00000167723|ENST00000576742|TRPV3;nc|ENSG00000167723|Q8NET8-2|TRPV3	ENST00000573539.5_1_17:3442880-3458098:-|nuORF	ENST00000573539.5_1_17:3442880-3458098:-|nuORF	MSMS	A375_MHC_IP_R2	2	765.0223999023438	2	765.022978	1528.0314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.979	1	53.73	53.23	54.23	0.75105								0	0	0	0.16353	1	19985	19985		0.35063	0.35063	1				43436	7218	31825	32080	42364	42364					0.2885083012367886
RKKVLLKVIIL	11	Unmodified	_RKKVLLKVIIL_					0	0	0		ENSG00000075785|ENST00000265062|RAB7A;ENST00000491681.1_1_3:128514210-128516981:+|nuORF	ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	MSMS	A375_MHC_IP_R1	1	661.9843139648438	2	661.984133	1321.95371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.65	1	119.65	119.15	120.15	0								0	0	0	0.1636	1	44248	44248		0	0	1				43437	1621	31826	32081	42365	42365					0.3056137941493944
RKKYSIVQK	9	Unmodified	_RKKYSIVQK_					0	0	0			REV__CTAGE6|p.E459K|1|0.17|ENSG00000271321|chr7:143756284-143756284|C/T|missense_variant	REV__CTAGE6|p.E459K|1|0.17|ENSG00000271321|chr7:143756284-143756284|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	575.4114379882812	2	575.358765	1148.70298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.1	1	141.1	140.6	141.6	0								0	0	0	0.15486	1	54170	54170		0.52476	0	1		+		43438	15933	31827	32082	42366	42366					0.1345737542230836
RKLEIILNH	9	Unmodified	_RKLEIILNH_					0	0	0		TRPC5|p.E264K|2|0.28|ENSG00000072315|chrX:111912401-111912401|C/T|missense_variant	TRPC5|p.E264K|2|0.28|ENSG00000072315|chrX:111912401-111912401|C/T|missense_variant	TRPC5|p.E264K|2|0.28|ENSG00000072315|chrX:111912401-111912401|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	379.635986328125	3	379.236385	1134.68733	-0.55748	-0.00021142	0.55851	0.00021181	0.0010296	3.9047E-07	379.23653418215173	29.523	0.75786	30.222	29.93	30.688	0.69872					33	14	3	0	0	0	0.44183	1	10278	10278		22.658	5.2154	1	9643400			43439	30077	31828	32083	42367	42367					0.1253708890528742
RKLGPGAKKF	10	Unmodified	_RKLGPGAKKF_					0	0	0			REV__nc|ENSG00000125505|Q96N66-3|MBOAT7	REV__nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-SECPEP	A375_MHC_IP_R2	2	368.2801208496094	3	367.901226	1100.68185	-0.25736	-9.4682E-05	-0.92963	-0.00034201	-1.187	-0.00043669	367.90066940355	25.459	0.25325	26.103	25.924	26.178	0.64368					6	4	2	0	0	0	0.94269	1	8451	8451		5.7834	3.8771	1	1548600	+		43440	18347	31829	32084	42368	42368					0.1355341011346809
RKLHLVWL	8	Unmodified	_RKLHLVWL_					0	0	0			REV__ENSG00000120278|ENST00000696526|PLEKHG1	REV__ENSG00000120278|ENST00000696526|PLEKHG1	MSMS	A375_MHC_IP_R2	2	355.4596862792969	3	355.562433	1063.66547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.298	1	53.05	52.55	53.55	0.75225								0	0	0	0.16876	1	19711	19711		0.45834	0	1		+		43441	18119	31830	32085	42369	42369					0.1361832894735926
RKLIFIKKKR	10	Unmodified	_RKLIFIKKKR_					0	0	0		nc|ENSG00000184363|Q9Y446-2|PKP3;ENSG00000184363|ENST00000331563|PKP3	nc|ENSG00000184363|Q9Y446-2|PKP3	nc|ENSG00000184363|Q9Y446-2|PKP3	MSMS	A375_MHC_IP_R1	1	665.5121459960938	2	665.463899	1328.91324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.46	1	118.46	117.96	118.96	0								0	0	0	0.15642	1	43615	43615		0	0	1				43442	8576	31831	32086	42370	42370					0.261944578151315
RKLKEKQKQKE	11	Unmodified	_RKLKEKQKQKE_					0	0	0		ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant;ANK2|p.D3531Ffs*6|1|0.05|ENSG00000145362|chr4:113359207-113359208|-/ATTCTAT|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2	ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant	ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	482.0310974121094	3	481.631575	1441.8729	-0.72592	-0.00034963	0.10387	5.0025E-05	-0.62206	-0.0002996	481.63158166815396	149.04	1.6073	149.04	148.21	149.82	0					87	39	3	0	0	0	0.73934	1	56818	56818		0	0	1	241640			43443	132	31832	32087	42371	42371					0.16963446634076718
RKLKEKQKQKE	11	Unmodified	_RKLKEKQKQKE_					0	0	0		ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant;ANK2|p.D3531Ffs*6|1|0.05|ENSG00000145362|chr4:113359207-113359208|-/ATTCTAT|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2	ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant	ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	722.3426513671875	2	721.943724	1441.8729	-0.58915	-0.00042533	0.20862	0.00015061	-0.38053	-0.00027472	721.943666874182	149.07	2.4803	149.09	147.53	150.01	0.018707					294	106	5	0	0	0	0.73934	2	57503	57503;58076		0	0	1	2765700			43444	132	31832	32087	42372;42373	42372					0.16963446634076718
RKLKKRYKTV	10	Unmodified	_RKLKKRYKTV_					0	0	0			REV__ENST00000502722.1_1_5:77784733-77784811:-|nuORF	REV__ENST00000502722.1_1_5:77784733-77784811:-|nuORF	MSMS	A375_MHC_IP_R2	2	660.4993896484375	2	660.435338	1318.85612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.076	1	89.808	89.308	90.308	0.7318								0	0	0	0.15591	1	33902	33902		1.6526	0.32309	1		+		43445	25504	31833	32088	42374	42374					0.20944990538760067
RKLKLKRRRRP	11	Unmodified	_RKLKLKRRRRP_					0	0	0		ENST00000502782.5_1_5:34845647-34845701:+|nuORF	ENST00000502782.5_1_5:34845647-34845701:+|nuORF	ENST00000502782.5_1_5:34845647-34845701:+|nuORF	MSMS	A375_MHC_IP_R2	2	754.01611328125	2	754.018227	1506.0219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.78	1	121.22	120.72	121.72	0.44488								0	0	0	0.1636	1	46125	46125		0	0	1				43446	12794	31834	32089	42375	42375					0.2891306183812503
RKLKRLKKKR	10	Unmodified	_RKLKRLKKKR_					0	0	0		ENST00000398637.9_1_12:46581311-46581524:-|nuORF	ENST00000398637.9_1_12:46581311-46581524:-|nuORF	ENST00000398637.9_1_12:46581311-46581524:-|nuORF	MSMS	A375_MHC_IP_R2	2	677.7195434570312	2	677.485697	1352.95684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.574	1	93.313	92.813	93.813	0.73902								0	0	0	0.15642	1	35204	35204		0	0	1				43447	11524	31835	32090	42376	42376					0.2944806731227345
RKLKTSEALF	10	Unmodified	_RKLKTSEALF_					0	0	0		ENST00000442588.5_1_1:198126217-198201687:+|nuORF	ENST00000442588.5_1_1:198126217-198201687:+|nuORF	ENST00000442588.5_1_1:198126217-198201687:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	398.6395263671875	3	398.239796	1191.69756	-0.029249	-1.1648E-05	-0.4264	-0.00016981	-0.45565	-0.00018146	398.2395262088474	70.229	0.75964	70.963	70.693	71.453	0.73421					33	14	3	0	0	0	0.70027	1	26620	26620		12.175	1.2758	1	4428500			43448	11995	31836	32091	42377	42377					0.10937651839844875
RKLLEKLILPY	11	Unmodified	_RKLLEKLILPY_					0	0	0			REV__ENST00000517617.1_1_8:68864752-69023167:+|nuORF	REV__ENST00000517617.1_1_8:68864752-69023167:+|nuORF	MSMS	A375_MHC_IP_R2	2	693.5174560546875	2	693.44758	1384.88061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.771	1	30.47	29.97	30.97	0.69872								0	0	0	0.16353	1	10421	10421		0.35063	0	1		+		43449	16357	31837	32092	42378	42378					0.2035620590168037
RKLLKVIPLL	10	Unmodified	_RKLLKVIPLL_					0	0	0		nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	MSMS	A375_MHC_IP_R1	1	597.224609375	2	596.928826	1191.8431	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.383	1	19.383	18.883	19.883	0								0	0	0	0.15642	1	4774	4774		0	0	1				43450	8246	31838	32093	42379	42379					0.25485159426716564
RKLLKVIPLL	10	Unmodified	_RKLLKVIPLL_					0	0	0		nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	MSMS	A375_MHC_IP_R2	2	398.6554260253906	3	398.28831	1191.8431	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.49	1	142.52	142.02	143.02	0.030731								0	0	0	0.15628	1	55702	55702		0.15932	0	1				43451	8246	31838	32093	42380	42380					0.25485159426716564
RKLLLLKLIKL	11	Unmodified	_RKLLLLKLIKL_					0	0	0			REV__ENST00000349215.7_1_11:18339453-18343686:-|nuORF	REV__ENST00000349215.7_1_11:18339453-18343686:-|nuORF	MSMS	A375_MHC_IP_R2	2	675.9666748046875	2	675.999783	1349.98501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.03	1	104.8	104.3	105.3	0.76308								0	0	0	0.1636	1	39373	39373		0	0	1		+		43452	23790	31839	32094	42381	42381					0.32401952449026794
RKLLQHKKLL	10	Unmodified	_RKLLQHKKLL_					0	0	0			REV__SPTA1|p.E1653K|1|0.26|ENSG00000163554|chr1:158639605-158639605|C/T|missense_variant	REV__SPTA1|p.E1653K|1|0.26|ENSG00000163554|chr1:158639605-158639605|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	426.19732666015625	3	426.290713	1275.85031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.635	1	18.232	17.732	18.732	0.59616								0	0	0	0.15637	1	5196	5196		0.15932	0.064481	1		+		43453	28038	31840	32095	42382	42382					0.22341892027134236
RKLLQHKKLL	10	Unmodified	_RKLLQHKKLL_					0	0	0			REV__SPTA1|p.E1653K|1|0.26|ENSG00000163554|chr1:158639605-158639605|C/T|missense_variant	REV__SPTA1|p.E1653K|1|0.26|ENSG00000163554|chr1:158639605-158639605|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	426.1971740722656	3	426.290713	1275.85031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.144	1	18.748	18.248	19.248	0.60308								0	0	0	0.15637	1	5381	5381		0.15932	0.075971	1		+		43454	28038	31840	32095	42383	42383					0.22341892027134236
RKLNSFPY	8	Unmodified	_RKLNSFPY_					0	0	0			REV__EFHC2|p.L548R|1|0.08|ENSG00000183690|chrX:44229757-44229757|A/C|missense_variant	REV__EFHC2|p.L548R|1|0.08|ENSG00000183690|chrX:44229757-44229757|A/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	513.1689453125	2	512.782359	1023.55016	-1.2195	-0.00062533	1.6389	0.0008404	0.41943	0.00021508	512.7824185628049	33.575	0.6078	34.328	34.095	34.702	0.75225					24	11	4	0	0	0	0.94479	1	11982	11982		19.439	5.9311	1	2648600	+		43455	16068	31841	32096	42384	42384					0.03933180025705951
RKLPPLRWEA	10	Unmodified	_RKLPPLRWEA_					0	0	0			REV__ENST00000415574.6_1_2:132250659-132263934:+|nuORF	REV__ENST00000415574.6_1_2:132250659-132263934:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	422.98681640625	3	422.587418	1264.74043	-0.4571	-0.00019316	-1.1768	-0.00049731	-1.6339	-0.00069047	422.5869983483811	20.311	0.6611	20.922	20.651	21.312	0.61029					21	12	3	0	0	0	0.72006	1	6310	6310		3.3196	1.0669	1	1210800	+		43456	24520	31842	32097	42385	42385					0.11864466687939057
RKLPRLEI	8	Unmodified	_RKLPRLEI_					0	0	0		ENSG00000198026|ENST00000322927|ZNF335;nc|ENSG00000198026|Q9H4Z2-2|ZNF335	ENSG00000198026|ENST00000322927|ZNF335	ENSG00000198026|ENST00000322927|ZNF335	MULTI-MSMS	A375_MHC_IP_R2	2	513.9058837890625	2	512.834926	1023.6553	-0.56567	-0.00029009	-0.14821	-7.6009E-05	-0.71388	-0.0003661	512.834655107841	149.84	1.1101	149.86	148.9	150.01	0.01825					110	49	3	0	0	0	0.77842	1	58098	58098		0.69038	0	1	182330			43457	9224	31843	32098	42386	42386					0.14441721222112847
RKLRFMRWYLL	11	Unmodified	_RKLRFMRWYLL_					0	0	0			REV__ENSG00000144218|ENST00000672756|AFF3	REV__ENSG00000144218|ENST00000672756|AFF3	MULTI-SECPEP	A375_MHC_IP_R1	1	528.3771362304688	3	527.978141	1580.91259	-0.8601	-0.00045411	-0.87716	-0.00046312	-1.7373	-0.00091724	528.3120849897551	139.18	0.30151	139.18	139.01	139.32	0					18	5	5	0	0	0	1.0015	1	53515	53515		0.094841	0.011491	1	1988300	+		43458	19412	31844	32099	42387	42387					0.14537295103832548
RKLRKIFIT	9	Unmodified	_RKLRKIFIT_					0	0	0		ENST00000313956.4_1_19:53432472-53432580:-|nuORF	ENST00000313956.4_1_19:53432472-53432580:-|nuORF	ENST00000313956.4_1_19:53432472-53432580:-|nuORF	MSMS	A375_MHC_IP_R1	1	587.8820190429688	2	587.892775	1173.771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.733	1	89.733	89.233	90.233	0								0	0	0	0.15486	1	32968	32968		2.0598	0	1				43459	10645	31845	32100	42388	42388					0.1910624507297598
RKLRLYLPLK	10	Unmodified	_RKLRLYLPLK_					0	0	0			REV__ENST00000573209.1_1_17:7350776-7358776:+|nuORF	REV__ENST00000573209.1_1_17:7350776-7358776:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1299.3870849609375	1	1299.86234	1298.85506	0.49854	0.00064804	-1.0285	-0.0013369	-0.52999	-0.00068891	1300.8633358546836	113.04	0.25537	113.74	113.56	113.82	0.70985					5	4	2	0	0	0	0.94516	1	42612	42612		3.5965	0	1	5449700	+		43460	20970	31846	32101	42389	42389					0.21758776169849625
RKLRRIRPLS	10	Unmodified	_RKLRRIRPLS_					0	0	0		nc|ENSG00000187122|O75093-2|SLIT1	nc|ENSG00000187122|O75093-2|SLIT1	nc|ENSG00000187122|O75093-2|SLIT1	MSMS	A375_MHC_IP_R1	1	647.9342651367188	2	647.930754	1293.84696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.019	1	78.019	77.519	78.519	0								0	0	0	0.15591	1	28477	28477		1.6526	0.32309	1				43461	14818	31847	32102	42390	42390					0.21178641973119738
RKLVAKKLKL	10	Unmodified	_RKLVAKKLKL_					0	0	0			REV__ENST00000480924.3_1_12:87563815-87564172:-|nuORF	REV__ENST00000480924.3_1_12:87563815-87564172:-|nuORF	MSMS	A375_MHC_IP_R2	2	599.1514892578125	2	598.9319	1195.84925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.141	1	29.84	29.34	30.34	0.69872								0	0	0	0.15629	1	10152	10152		0.40072	0	1		+		43462	25250	31848	32103	42391	42391					0.259156776582131
RKLWRVYRPRV	11	Unmodified	_RKLWRVYRPRV_					0	0	0		ENSG00000170468|ENST00000304061|RIOX1;nc|ENSG00000170468|Q9H6W3-2|RIOX1	ENSG00000170468|ENST00000304061|RIOX1	ENSG00000170468|ENST00000304061|RIOX1	MULTI-MSMS	A375_MHC_IP_R1	1	383.38885498046875	4	382.988844	1527.92627	-0.044224	-1.6937E-05	-0.44396	-0.00017003	-0.48819	-0.00018697	383.23942466340196	68.226	0.61024	68.226	67.955	68.565	0					29	11	4	0	0	0	0.73886	1	24742	24742		0.45452	0.046251	1	3305300			43463	7510	31849	32104	42392	42392					0.1834228892723786
RKLWRVYRPRV	11	Unmodified	_RKLWRVYRPRV_					0	0	0		ENSG00000170468|ENST00000304061|RIOX1;nc|ENSG00000170468|Q9H6W3-2|RIOX1	ENSG00000170468|ENST00000304061|RIOX1	ENSG00000170468|ENST00000304061|RIOX1	MULTI-MSMS	A375_MHC_IP_R2	2	383.6390075683594	4	382.988844	1527.92627	-0.14891	-5.703E-05	-0.79507	-0.0003045	-0.94397	-0.00036153	382.9885233653701	67.062	0.55706	67.799	67.495	68.052	0.73631					29	10	4	0	0	0	0.73795	1	25422	25422		1.3296	1.2463	1	3610200			43464	7510	31849	32104	42393	42393					0.1834228892723786
RKNKKRRRKR	10	Unmodified	_RKNKKRRRKR_					0	0	0			REV__ENST00000321521.13_1_5:102544671-102544749:+|nuORF	REV__ENST00000321521.13_1_5:102544671-102544749:+|nuORF	MSMS	A375_MHC_IP_R1	1	713.7249145507812	2	713.476726	1424.9389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.61	1	119.61	119.11	120.11	0								0	0	0	0.15596	1	44226	44226		1.4819	0	1		+		43465	23568	31850	32105	42394	42394					0.24342745110129727
RKPGRRRRRRR	11	Unmodified	_RKPGRRRRRRR_					0	0	0			REV__ENSG00000248767|ENST00000506382|FOXL3	REV__ENSG00000248767|ENST00000506382|FOXL3	MSMS	A375_MHC_IP_R1	1	775.3268432617188	2	775.501598	1548.98864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.49	1	109.49	108.99	109.99	0								0	0	0	0.1636	1	40160	40160		0	0	1		+		43466	22833	31851	32106	42395	42395					0.2361087283877623
RKPLVLRFETP	11	Unmodified	_RKPLVLRFETP_					0	0	0			REV__ENST00000604971.5_1_6:350843-350942:+|nuORF	REV__ENST00000604971.5_1_6:350843-350942:+|nuORF	MSMS	A375_MHC_IP_R2	2	452.6523742675781	3	452.610111	1354.8085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.88	1	135.99	135.49	136.49	0.11134								0	0	0	0.1628	1	53395	53395		4.1166	3.0069	1		+		43467	26532	31852	32107	42396	42396					0.145292915479331
RKQEKQRRKEK	11	Unmodified	_RKQEKQRRKEK_					0	0	0			REV__ENSG00000132970|ENST00000335327|WASF3	REV__ENSG00000132970|ENST00000335327|WASF3	MSMS	A375_MHC_IP_R2	2	757.7404174804688	2	757.455322	1512.89609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.81	1	144.84	144.34	145.34	0.021408								0	0	0	0.16353	1	56555	56555		0.35063	0	1		+		43468	18697	31853	32108	42397	42397					0.1601588547139272
RKQHRWKARRN	11	Unmodified	_RKQHRWKARRN_					0	0	0			REV__ENSG00000063515|ENST00000086933|GSC2	REV__ENSG00000063515|ENST00000086933|GSC2	MULTI-SECPEP	A375_MHC_IP_R1	1	768.8466186523438	2	768.448166	1534.88178	-0.83547	-0.00064202	-0.38324	-0.0002945	-1.2187	-0.00093652	768.4477118770202	148.82	1.9123	148.82	147.78	149.69	0					119	45	4	0	0	0	1.0014	1	56870	56870		0	0	1	637140	+		43469	16469	31854	32109	42398	42398					0.13573277833779684
RKQNLLTE	8	Unmodified	_RKQNLLTE_					0	0	0			REV__ENSG00000077935|ENST00000357450|SMC1B	REV__ENSG00000077935|ENST00000357450|SMC1B	MULTI-MSMS	A375_MHC_IP_R1	1	501.690185546875	2	501.290548	1000.56654	-0.7313	-0.00036659	0.13993	7.0148E-05	-0.59137	-0.00029645	501.29051103950144	121.05	1.9774	121.05	120.55	122.53	0					89	38	3	0	0	0	0.77643	1	45193	45193		7.9102	0	1	74159000	+		43470	16699	31855	32110	42399	42399					0.06628261191804086
RKQRVWTLYSV	11	Unmodified	_RKQRVWTLYSV_					0	0	0		ENST00000469100.5_1_1:33241299-33241524:-|nuORF	ENST00000469100.5_1_1:33241299-33241524:-|nuORF	ENST00000469100.5_1_1:33241299-33241524:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	479.6769714355469	3	479.277132	1434.80957	-0.67822	-0.00032506	-0.080135	-3.8407E-05	-0.75836	-0.00036346	479.27727935356455	132.09	1.0605	132.09	131.53	132.59	0					59	20	4	0	0	0	0.73679	2	50920	50920;50949		2.4348	1.22	1	17082000			43471	12311	31856	32111	42400;42401	42400					0.10955505916854236
RKQRVWTLYSV	11	Unmodified	_RKQRVWTLYSV_					0	0	0		ENST00000469100.5_1_1:33241299-33241524:-|nuORF	ENST00000469100.5_1_1:33241299-33241524:-|nuORF	ENST00000469100.5_1_1:33241299-33241524:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	479.6565246582031	3	479.277132	1434.80957	-0.52316	-0.00025074	-0.1096	-5.253E-05	-0.63276	-0.00030327	479.2774076984812	131.94	1.1704	132.13	131.49	132.66	0.18953					60	22	4	0	0	0	0.73679	3	51898	51795;51898;51926		2.4348	1.9803	1	18588000			43472	12311	31856	32111	42402;42403;42404	42403					0.10955505916854236
RKQSESIEEHV	11	Unmodified	_RKQSESIEEHV_					0	0	0		ENSG00000104093|ENST00000560891|DMXL2	ENSG00000104093|ENST00000560891|DMXL2	ENSG00000104093|ENST00000560891|DMXL2	MSMS	A375_MHC_IP_R2	2	447.9212951660156	3	447.896757	1340.66844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.741	1	26.401	25.901	26.901	0.65992								0	0	0	0.16124	1	8633	8633		6.6235	0	1				43473	2485	31857	32112	42405	42405					0.011734627528994679
RKQSVVDPA	9	Unmodified	_RKQSVVDPA_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	MULTI-MSMS	A375_MHC_IP_R1	1	500.6816101074219	2	500.282723	998.550893	-0.098376	-4.9216E-05	0.047877	2.3952E-05	-0.050499	-2.5264E-05	500.2826546918924	126.53	1.5133	126.53	125.65	127.16	0					55	29	2	0	0	0	0.70307	1	48039	48039		6.7232	2.3939	1	23222000			43474	1201	31858	32113	42406	42406					0.051559746747557256
RKRARAHE	8	Unmodified	_RKRARAHE_					0	0	0		ENST00000380171.7_2_2:27434968-27435169:+|nuORF	ENST00000380171.7_2_2:27434968-27435169:+|nuORF	ENST00000380171.7_2_2:27434968-27435169:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	512.6994018554688	2	512.299573	1022.58459	-0.59065	-0.00030259	0.10438	5.3475E-05	-0.48627	-0.00024912	512.299518436916	136.46	0.56268	136.57	136.25	136.81	0.11134					18	10	3	0	0	0	0.7773	1	53596	53596		4.756	0	1	3894100			43475	11347	31859	32114	42407	42407					0.07420440957173469
RKRARAHE	8	Unmodified	_RKRARAHE_					0	0	0		ENST00000380171.7_2_2:27434968-27435169:+|nuORF	ENST00000380171.7_2_2:27434968-27435169:+|nuORF	ENST00000380171.7_2_2:27434968-27435169:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	512.299573	1022.58459	-0.77602	-0.00039755	0.1874	9.6005E-05	-0.58862	-0.00030155	512.2995901772088	136.51	0.51263	136.51	136.36	136.87	0	-0.034109	4.0498E-05	NaN	4.756	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4110300			43476	11347	31859	32114							0.07420440957173469
RKRARAHE	8	Unmodified	_RKRARAHE_					0	0	0		ENST00000380171.7_2_2:27434968-27435169:+|nuORF	ENST00000380171.7_2_2:27434968-27435169:+|nuORF	ENST00000380171.7_2_2:27434968-27435169:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	512.299573	1022.58459	-0.59065	-0.00030259	0.10438	5.3475E-05	-0.48627	-0.00024912	512.299518436916	136.46	0.56268	136.57	136.25	136.81	0.11134	0.034109	-4.4562E-05	NaN	4.756	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3894100			43477	11347	31859	32114							0.07420440957173469
RKRGGSPA	8	Unmodified	_RKRGGSPA_					0	0	0		ENSG00000164430|ENST00000370315|CGAS;nc|ENSG00000164430|Q8N884-2|CGAS;ENST00000459924.1_1_6:74149899-74155344:-|nuORF	ENSG00000164430|ENST00000370315|CGAS	ENSG00000164430|ENST00000370315|CGAS	MULTI-MSMS	A375_MHC_IP_R1	1	415.1434020996094	2	414.743568	827.472583	0.34498	0.00014308	-0.32442	-0.00013455	0.020553	8.524E-06	414.7433159834792	99.092	2.4863	99.092	97.54	100.03	0					81	48	2	0	0	0	0.77702	1	36578	36578		5.7604	5.7604	1	3680600			43478	6838	31860	32115	42408	42408					0.051945868801908546
RKRHIRAW	8	Unmodified	_RKRHIRAW_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MSMS	A375_MHC_IP_R1	1	374.95379638671875	3	374.896698	1121.66826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.36	1	37.36	36.86	37.86	0								0	0	0	0.16876	1	12589	12589		6.2058	2.3295	1		+		43479	21096	31861	32116	42409	42409					0.11229597124884094
RKRHRERDYRY	11	Unmodified	_RKRHRERDYRY_					0	0	0			REV__ENSG00000183287|ENST00000439986|CCBE1	REV__ENSG00000183287|ENST00000439986|CCBE1	MSMS	A375_MHC_IP_R1	1	545.905029296875	3	545.629339	1633.86619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.986	1	98.986	98.486	99.486	0								0	0	0	0.1635	1	36365	36365		0.50596	0.41111	1		+		43480	21746	31862	32117	42410	42410					0.07460946526066436
RKRIHRPRRRT	11	Unmodified	_RKRIHRPRRRT_					0	0	0		nc|ENSG00000164542|Q8NCT3|MATCAP2	nc|ENSG00000164542|Q8NCT3|MATCAP2	nc|ENSG00000164542|Q8NCT3|MATCAP2	MSMS	A375_MHC_IP_R2	2	766.364990234375	2	766.485082	1530.95561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.389	1	81.134	80.634	81.634	0.74474								0	0	0	0.16355	1	30519	30519		0.26902	0	1				43481	14730	31863	32118	42411	42411					0.21137245996101228
RKRISSTSSL	10	Unmodified	_RKRISSTSSL_					0	0	0		nc|ENSG00000145734|A6H8Y1-7|BDP1;nc|ENSG00000145734|A6H8Y1-6|BDP1;ENSG00000145734|ENST00000358731|BDP1;nc|ENSG00000145734|A6H8Y1-2|BDP1;ENST00000508917.6_1_5:70751704-70841064:+|nuORF;BDP1|p.P1911Rfs*9|1|0.11|ENSG00000145734|chr5:71524281-71524305|TCCTGAACCTGTTTCTGCTCAGATT/-|frameshift_variant;nc|ENSG00000145734|A6H8Y1-4|BDP1;nc|ENSG00000145734|A6H8Y1-3|BDP1	nc|ENSG00000145734|A6H8Y1-7|BDP1	nc|ENSG00000145734|A6H8Y1-7|BDP1	MSMS	A375_MHC_IP_R2	2	378.9326171875	3	378.891166	1133.65167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.969	1	20.579	20.079	21.079	0.61029								0	0	0	0.15435	1	6176	6176		3.5871	0.74377	1				43482	5576	31864	32119	42412	42412					0.0901900665762696
RKRKFYRQR	9	Unmodified	_RKRKFYRQR_					0	0	0			REV__KMT2E|p.D495Rfs*20|1|0.13|ENSG00000005483|chr7:105090125-105090126|-/A|frameshift_variant	REV__KMT2E|p.D495Rfs*20|1|0.13|ENSG00000005483|chr7:105090125-105090126|-/A|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	669.80322265625	2	669.404904	1336.79525	-0.95658	-0.00064034	0.23551	0.00015765	-0.72107	-0.00048269	669.4042880481927	149.15	2.2083	149.15	147.8	150	0					233	71	5	0	0	0	0.7724	1	57189	57189		0.52476	0	1	1498400	+		43483	26867	31865	32120	42413	42413					0.1403289827919707
RKRKLKEVLIQ	11	Unmodified	_RKRKLKEVLIQ_					0	0	0		ENSG00000163617|ENST00000295878|CCDC191;nc|ENSG00000163617|Q8NCU4-2|CCDC191;ENST00000460813.5_1_3:113723412-113755878:-|nuORF	ENSG00000163617|ENST00000295878|CCDC191	ENSG00000163617|ENST00000295878|CCDC191	MSMS	A375_MHC_IP_R2	2	705.9661254882812	2	705.967003	1409.91945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.263	1	54.014	53.514	54.514	0.75105								0	0	0	0.16337	1	20096	20096		1.1933	0	1				43484	6692	31866	32121	42414	42414					0.23088931256029355
RKRKWDLRSRS	11	Unmodified	_RKRKWDLRSRS_					0	0	0		ENST00000244763.8_1_6:7287660-7287759:-|nuORF	ENST00000244763.8_1_6:7287660-7287759:-|nuORF	ENST00000244763.8_1_6:7287660-7287759:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	496.3587951660156	3	496.627047	1486.85931	-0.73777	-0.0003664	0.93529	0.00046449	0.19752	9.8093E-05	496.6277003477836	140.47	0.36259	140.47	140.34	140.7	0					11	6	3	0	0	0	1.0015	1	53992	53992		0.094841	0	1	463660			43485	10182	31867	32122	42415	42415					0.13535633645483358
RKRLKIKLF	9	Unmodified	_RKRLKIKLF_					0	0	0			REV__PRPH2|p.E44K|2|0.34|ENSG00000112619|chr6:42722205-42722205|C/T|missense_variant	REV__PRPH2|p.E44K|2|0.34|ENSG00000112619|chr6:42722205-42722205|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	601.4805297851562	2	601.416417	1200.81828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.1	1	102.86	102.36	103.36	0.76428								0	0	0	0.15486	1	38692	38692		0.6015	0	1		+		43486	27841	31868	32123	42416	42416					0.22590524343968355
RKRMQCFKRLL	11	Unmodified	_RKRMQCFKRLL_					0	0	0			REV__nc|ENSG00000050628|P43115-4|PTGER3	REV__nc|ENSG00000050628|P43115-4|PTGER3	MULTI-MSMS	A375_MHC_IP_R2	2	494.3580017089844	3	493.623481	1477.84861	-0.57735	-0.00028499	0.82663	0.00040804	0.24928	0.00012305	493.6237695382306	45.225	0.45635	45.99	45.694	46.15	0.76518					17	8	3	0	0	0	0.73886	1	16886	16886		0.45452	0.45452	1	3849800	+		43487	27104	31869	32124	42417	42417					0.12880191675208152
RKRPRMRERFV	11	Unmodified	_RKRPRMRERFV_					0	0	0			REV__ENSG00000171132|ENST00000306156|PRKCE	REV__ENSG00000171132|ENST00000306156|PRKCE	MULTI-MSMS	A375_MHC_IP_R2	2	511.0341491699219	3	510.968527	1529.88375	-0.55927	-0.00028577	0.077244	3.9469E-05	-0.48203	-0.0002463	510.9686872306031	141.73	1.8374	141.76	141	142.84	0.030731					60	35	2	0	0	0	0.73924	1	55423	55423		0.094841	0.094841	1	1900600	+		43488	21045	31870	32125	42418	42418					0.14000570527355194
RKRREEVQFPQ	11	Unmodified	_RKRREEVQFPQ_					0	0	0			REV__ENSG00000162714|ENST00000682384|ZNF496	REV__ENSG00000162714|ENST00000682384|ZNF496	MSMS	A375_MHC_IP_R1	1	736.8068237304688	2	736.907673	1471.80079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.142	1	98.142	97.642	98.642	0								0	0	0	0.16203	1	36057	36057		8.1555	1.5252	1		+		43489	20296	31871	32126	42419	42419					0.0837653228036288
RKRRHPPD	8	Unmodified	_RKRRHPPD_					0	0	0		nc|ENSG00000065970|Q9P0K8-2|FOXJ2;ENSG00000065970|ENST00000162391|FOXJ2	nc|ENSG00000065970|Q9P0K8-2|FOXJ2	nc|ENSG00000065970|Q9P0K8-2|FOXJ2	MULTI-MSMS	A375_MHC_IP_R2	2	354.60650634765625	3	354.540691	1060.60024	-0.21216	-7.5221E-05	0.83664	0.00029662	0.62447	0.0002214	354.54092448272223	48.448	0.5564	49.205	48.98	49.536	0.75737					15	10	2	0	0	0	0.77703	1	18179	18179		5.7319	5.7319	1	4522400			43490	1397	31872	32127	42420	42420					0.07236727474241889
RKRRKKQKPKP	11	Unmodified	_RKRRKKQKPKP_					0	0	0		ENST00000513346.5_1_5:149743686-149747418:+|nuORF	ENST00000513346.5_1_5:149743686-149747418:+|nuORF	ENST00000513346.5_1_5:149743686-149747418:+|nuORF	MSMS	A375_MHC_IP_R1	1	725.5633544921875	2	725.483686	1448.95282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.74	1	144.74	144.24	145.24	0								0	0	0	0.16354	1	55498	55498		0.30703	0.30703	1				43491	12931	31873	32128	42421	42421					0.24629977818585758
RKRRNRKKKKK	11	Unmodified	_RKRRNRKKKKK_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MSMS	A375_MHC_IP_R2	2	763.6060180664062	2	763.521134	1525.02771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.12	1	123.49	122.99	123.99	0.3766								0	0	0	0.1636	1	47260	47260		0	0	1				43492	1871	31874	32129	42422	42422					0.28620160349782964
RKRRRKRTKFL	11	Unmodified	_RKRRRKRTKFL_					0	0	0			REV__ENST00000308478.9_1_7:110731416-110762496:+|nuORF	REV__ENST00000308478.9_1_7:110731416-110762496:+|nuORF	MSMS	A375_MHC_IP_R2	2	773.1589965820312	2	773.007859	1544.00117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.38	1	114.09	113.59	114.59	0.70985								0	0	0	0.1636	1	42749	42749		0	0	1		+		43493	23482	31875	32130	42423	42423					0.25092471458469845
RKRRRRAARRR	11	Unmodified	_RKRRRRAARRR_					0	0	0			REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MSMS	A375_MHC_IP_R2	2	769.5021362304688	2	769.501598	1536.98864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.11	1	102.88	102.38	103.38	0.76428								0	0	0	0.1636	1	38697	38697		0	0	1		+		43494	16839	31876	32131	42424	42424					0.24162872838792282
RKRRRRCFRKR	11	Unmodified	_RKRRRRCFRKR_					0	0	0		ENST00000257626.11_2_7:77035403-77045687:-|nuORF	ENST00000257626.11_2_7:77035403-77045687:-|nuORF	ENST00000257626.11_2_7:77035403-77045687:-|nuORF	MSMS	A375_MHC_IP_R2	2	540.0018310546875	3	540.002565	1616.98587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.948	1	19.551	19.051	20.051	0.60308								0	0	0	0.1636	1	5697	5697		0	0	1				43495	10248	31877	32132	42425	42425					0.20205281389621632
RKRRRWNKKSG	11	Unmodified	_RKRRRWNKKSG_					0	0	0			REV__nc|ENSG00000137309|P17096-3|HMGA1	REV__nc|ENSG00000137309|P17096-3|HMGA1	MULTI-MSMS	A375_MHC_IP_R1	1	491.6986083984375	3	491.299153	1470.87563	-0.64534	-0.00031706	0.41099	0.00020192	-0.23435	-0.00011514	491.2992537904349	138.43	2.0313	138.43	138.1	140.13	0					115	39	4	0	0	0	0.73924	1	53233	53233		0.094841	0.011491	1	39838000	+		43496	27247	31878	32133	42426	42426					0.15902759602249716
RKRSRDRERKK	11	Unmodified	_RKRSRDRERKK_					0	0	0		ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF;nc|ENSG00000131051|Q14498-3|RBM39;nc|ENSG00000131051|Q14498-2|RBM39;ENSG00000131051|ENST00000253363|RBM39;ENST00000442447.5_1_20:34319864-34322136:-|nuORF	ENST00000492779.5_1_20:34292405-34320086:-|nuORF	ENST00000492779.5_1_20:34292405-34320086:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	505.7066650390625	3	505.641468	1513.90257	-0.51885	-0.00026235	-0.38482	-0.00019458	-0.90367	-0.00045693	505.64124174424535	149.03	2.061	149.05	147.81	149.87	0.018707					100	67	2	0	0	0	0.73934	1	57912	57912		0	0	1	314390			43497	4304	31879	32134	42427	42427					0.16617823422757283
RKRYLARHRRC	11	Unmodified	_RKRYLARHRRC_					0	0	0		ENSG00000203326|ENST00000474037|ZNF525	ENSG00000203326|ENST00000474037|ZNF525	ENSG00000203326|ENST00000474037|ZNF525	MULTI-MSMS	A375_MHC_IP_R2	2	758.3385009765625	2	757.939119	1513.86369	-0.70351	-0.00053322	0.1316	9.9747E-05	-0.5719	-0.00043347	757.9396077953132	139.96	0.41098	140.02	139.8	140.21	0.059906					17	7	3	0	0	0	0.73902	1	54826	54826		0.30703	0	1	2018100			43498	9387	31880	32135	42428	42428					0.12730819587409314
RKSFPRRSF	9	Unmodified	_RKSFPRRSF_					0	0	0		nc|ENSG00000146063|Q8WV44-2|TRIM41;ENSG00000146063|ENST00000315073|TRIM41;nc|ENSG00000146063|Q8WV44-4|TRIM41;ENST00000508930.1_1_5:180650987-180660460:+|nuORF	nc|ENSG00000146063|Q8WV44-2|TRIM41	nc|ENSG00000146063|Q8WV44-2|TRIM41	MULTI-MSMS	A375_MHC_IP_R1	1	393.9124450683594	3	394.228113	1179.66251	-0.17527	-6.9096E-05	-0.11447	-4.5129E-05	-0.28974	-0.00011422	394.22803616357487	27.982	0.95745	27.982	27.533	28.491	0					59	18	4	0	0	0	0.7235	1	8608	8608		4.897	0.36815	1	28819000			43499	5601	31881	32136	42429	42429					0.0798645382255927
RKSFRLRRRDL	11	Unmodified	_RKSFRLRRRDL_					0	0	0		nc|ENSG00000078596|O43736-2|ITM2A;ENST00000469541.5_1_X:78616588-78622401:-|nuORF;ENSG00000078596|ENST00000373298|ITM2A	nc|ENSG00000078596|O43736-2|ITM2A	nc|ENSG00000078596|O43736-2|ITM2A	MULTI-SECPEP	A375_MHC_IP_R1	1	502.16595458984375	3	501.642809	1501.9066	-0.38106	-0.00019115	-0.86866	-0.00043576	-1.2497	-0.00062691	501.64234649989857	73.969	0.40599	73.969	73.74	74.146	0					13	7	2	0	0	0	0.99971	1	27007	27007		0.92553	0.47102	1	2227000			43500	1675	31882	32137	42430	42430					0.17571912916491783
RKSFRLRRRDL	11	Unmodified	_RKSFRLRRRDL_					0	0	0		nc|ENSG00000078596|O43736-2|ITM2A;ENST00000469541.5_1_X:78616588-78622401:-|nuORF;ENSG00000078596|ENST00000373298|ITM2A	nc|ENSG00000078596|O43736-2|ITM2A	nc|ENSG00000078596|O43736-2|ITM2A	MULTI-MATCH	A375_MHC_IP_R2	2		3	501.642809	1501.9066	-0.59048	-0.00029621	-0.39378	-0.00019754	-0.98426	-0.00049375	501.64262348637595	73.167	0.51036	73.903	73.53	74.041	0.7354	-0.033152	0.00033362	NaN	0.92553	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1220900			43501	1675	31882	32137							0.17571912916491783
RKSGRKGA	8	Unmodified	_RKSGRKGA_					0	0	0			REV__E2F8|p.E601K|1|0.25|ENSG00000129173|chr11:19229546-19229546|C/T|missense_variant	REV__E2F8|p.E601K|1|0.25|ENSG00000129173|chr11:19229546-19229546|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	430.29425048828125	2	430.264668	858.514782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.98	1	75.98	75.48	76.48	0								0	0	0	0.16876	1	27688	27688		4.756	0	1		+		43502	16053	31883	32138	42431	42431					0.07986562288556343
RKSKRFRVRY	10	Unmodified	_RKSKRFRVRY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;TTN|p.L14011*|1|0.26|ENSG00000155657|chr2:178618595-178618595|A/-|frameshift_variant;TTN|p.V5956Efs*8|1|0.3|ENSG00000155657|chr2:178729292-178729338|CAGGGCAACTCTAGTACTGCATGAGCAGCTGCCGCCTTCATTGGATA/-|frameshift_variant;TTN|p.F5884Lfs*5|1|0.04|ENSG00000155657|chr2:178729553-178729553|A/-|frameshift_variant;TTN|p.D2189Tfs*17|1|0.21|ENSG00000155657|chr2:178775147-178775147|T/-|frameshift_variant;TTN|p.D1892N|1|0.38|ENSG00000155657|chr2:178776190-178776190|C/T|missense_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	A375_MHC_IP_R2	2	698.3262939453125	2	698.425836	1394.83712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.2	1	145.22	144.72	145.72	0.021408								0	0	0	0.15628	1	56697	56697		0.45834	0	1				43503	6151;14694;14693	31884	32139	42432	42432					0.1554945396774201
RKSLAKSTQ	9	Unmodified	_RKSLAKSTQ_					0	0	0			REV__tr|U7SM20|U7SM20_FUSNUCelldivisioninhibitorSepFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02053PE=4SV=1	REV__tr|U7SM20|U7SM20_FUSNUCelldivisioninhibitorSepFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02053PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	510.2027587890625	2	509.803823	1017.59309	-0.66809	-0.00034059	0.13686	6.9772E-05	-0.53123	-0.00027082	509.8037821582553	118.45	2.1323	119.06	118.44	120.57	0.60909					82	41	3	0	0	0	0.67332	1	45424	45424		9.3831	0	1	44292000	+		43504	28286	31885	32140	42433	42433					0.08499950083148633
RKSWENSGF	9	Unmodified	_RKSWENSGF_					0	0	0		nc|ENSG00000136449|Q8TBZ2|MYCBPAP;ENSG00000136449|ENST00000323776|MYCBPAP;ENST00000470609.5_1_17:48585906-48599496:+|nuORF	nc|ENSG00000136449|Q8TBZ2|MYCBPAP	nc|ENSG00000136449|Q8TBZ2|MYCBPAP	MULTI-SECPEP	A375_MHC_IP_R2	2	370.2486572265625	3	370.849079	1109.52541	0.099697	3.6973E-05	-0.058279	-2.1613E-05	0.041418	1.536E-05	370.84919342535477	19.086	0.25011	19.689	19.583	19.833	0.60308					5	4	2	0	0	0	0.80516	1	5785	5785		2.2828	0.3764	1	2233700			43505	4789	31886	32141	42434	42434					-0.024974998476636756
RKTAGLSDLY	10	Unmodified	_RKTAGLSDLY_					0	0	0		ENSG00000074319|ENST00000251968|TSG101;nc|ENSG00000074319|Q99816-2|TSG101	ENSG00000074319|ENST00000251968|TSG101	ENSG00000074319|ENST00000251968|TSG101	MULTI-MSMS	A375_MHC_IP_R2	2	375.6084289550781	3	375.208384	1122.60332	-0.22979	-8.6221E-05	0.24645	9.247E-05	0.016656	6.2495E-06	375.2084583965834	33.736	0.86183	34.488	33.891	34.753	0.75225					21	16	2	0	0	0	0.60608	1	12111	12111		13.519	0	1	8697700			43506	1581	31887	32142	42435	42435					0.04692513017744204
RKTCKRML	8	Unmodified	_RKTCKRML_					0	0	0			REV__tr|U7T8R5|U7T8R5_FUSNUPeptidaseM20domain-containingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00140PE=3SV=1	REV__tr|U7T8R5|U7T8R5_FUSNUPeptidaseM20domain-containingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00140PE=3SV=1	MSMS	A375_MHC_IP_R2	2	518.2449340820312	2	518.299339	1034.58412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.91	1	149.93	149.43	150.43	0.01825								0	0	0	0.16876	1	58163	58163		0.69038	0	1		+		43507	28892	31888	32143	42436	42436					0.06821561921447028
RKVGDHWH	8	Unmodified	_RKVGDHWH_					0	0	0			REV__ENST00000485659.1_1_10:13240798-13246428:+|nuORF	REV__ENST00000485659.1_1_10:13240798-13246428:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1034.927734375	1	1034.52787	1033.5206	-0.18971	-0.00019626	0.23004	0.00023799	0.040338	4.1731E-05	1034.5280492925688	145.16	0.14493	145.16	145.11	145.25	0					6	4	2	0	0	0	0.77839	1	55671	55671		0.79363	0	1	313870	+		43508	16494	31889	32144	42437	42437					0.005176608002102512
RKVNYLLAHQR	11	Unmodified	_RKVNYLLAHQR_					0	0	0			REV__ENSG00000165370|ENST00000651716|GPR101	REV__ENSG00000165370|ENST00000651716|GPR101	MSMS	A375_MHC_IP_R2	2	699.8128051757812	2	699.409852	1396.80515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.8	1	144.82	144.32	145.32	0.021408								0	0	0	0.16334	1	56550	56550		1.3295	0.87119	1		+		43509	20577	31890	32145	42438	42438					0.12262041493909237
RKVRLRRWRHL	11	Unmodified	_RKVRLRRWRHL_					0	0	0		ENST00000342232.4_1_8:75233190-75233559:-|nuORF	ENST00000342232.4_1_8:75233190-75233559:-|nuORF	ENST00000342232.4_1_8:75233190-75233559:-|nuORF	MSMS	A375_MHC_IP_R2	2	788.8995361328125	2	788.500201	1574.98585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.87	1	144.89	144.39	145.39	0.021408								0	0	0	0.16353	1	56576	56576		0.35063	0.35063	1				43510	10875	31891	32146	42439	42439					0.22135604661298203
RKVYWFEKFLW	11	Unmodified	_RKVYWFEKFLW_					0	0	0		nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;nc|ENSG00000165525|O60524-5|NEMF	nc|ENSG00000165525|O60524-4|NEMF	nc|ENSG00000165525|O60524-4|NEMF	MULTI-MSMS	A375_MHC_IP_R2	2	534.844482421875	3	534.625761	1600.85546	-1.0598	-0.00056662	-1.4674	-0.00078449	-2.5272	-0.0013511	534.959324397441	18.955	0.18035	19.559	19.452	19.633	0.60308					5	3	2	0	0	0	0.73924	1	5698	5698		0.094841	0.021578	1	8366300			43511	6964	31892	32147	42440	42440					0.07906151099064118
RKWMKWYGKKH	11	Unmodified	_RKWMKWYGKKH_					0	0	0		nc|ENSG00000104885|Q8TEK3-1|DOT1L;ENSG00000104885|ENST00000398665|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	MULTI-SECPEP	A375_MHC_IP_R2	2	774.8255004882812	2	774.424448	1546.83434	-0.89507	-0.00069316	0.76946	0.00059589	-0.12561	-9.7275E-05	774.4251629560658	108.8	0.30598	109.54	109.37	109.67	0.74684					10	5	2	0	0	0	0.99676	1	41077	41077		2.9952	0	1	2395100			43512	14521	31893	32148	42441	42441					0.08279862518543268
RKWREHHLRKF	11	Unmodified	_RKWREHHLRKF_					0	0	0			REV__ENSG00000178177|ENST00000635767|LCORL	REV__ENSG00000178177|ENST00000635767|LCORL	MULTI-SECPEP	A375_MHC_IP_R2	2	399.650634765625	4	398.981284	1591.89603	-0.33169	-0.00013234	-0.1274	-5.0831E-05	-0.45909	-0.00018317	398.98207056169423	18.27	0.074387	18.873	18.82	18.894	0.60308					11	7	2	0	0	0	1.0015	1	5426	5426		0	0	1	206590	+		43513	21491	31894	32149	42442	42442					0.12375930262032853
RKWRNQRNYR	10	Unmodified	_RKWRNQRNYR_					0	0	0			REV__nc|ENSG00000146530|Q8N2E2-3|VWDE	REV__nc|ENSG00000146530|Q8N2E2-3|VWDE	MSMS	A375_MHC_IP_R2	2	738.9071655273438	2	738.905799	1475.79705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.69	1	138.76	138.26	139.26	0.070969								0	0	0	0.15629	1	54374	54374		0.40072	0.050084	1		+		43514	19541	31895	32150	42443	42443					0.07817907297180682
RKWRRRRRRRR	11	Unmodified	_RKWRRRRRRRR_					0	0	0		ENST00000306085.10_3_7:100730337-100730388:+|nuORF	ENST00000306085.10_3_7:100730337-100730388:+|nuORF	ENST00000306085.10_3_7:100730337-100730388:+|nuORF	MSMS	A375_MHC_IP_R1	1	869.5099487304688	2	869.554696	1737.09484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.5	1	135.5	135	136	0								0	0	0	0.1636	1	52232	52232		0	0	1				43515	10573	31896	32151	42444	42444					0.255776284041076
RKYFYLVGYG	10	Unmodified	_RKYFYLVGYG_					0	0	0		nc|ENSG00000150471|Q9HAR2-2|ADGRL3;nc|ENSG00000150471|Q9HAR2|ADGRL3;nc|ENSG00000150471|Q9HAR2-4|ADGRL3;ENSG00000150471|ENST00000683033|ADGRL3	nc|ENSG00000150471|Q9HAR2-2|ADGRL3	nc|ENSG00000150471|Q9HAR2-2|ADGRL3	MULTI-MSMS	A375_MHC_IP_R1	1	633.7705078125	2	633.337498	1264.66044	-0.86909	-0.00055043	1.6396	0.0010384	0.77047	0.00048797	633.3385478389433	130.12	0.86302	130.12	129.75	130.62	0					29	16	2	0	0	0	0.71866	1	50005	50005		3.9444	1.2092	1	21067000			43516	5845	31897	32152	42445	42445					0.03869980294098241
RKYSEMDPKYF	11	Unmodified	_RKYSEMDPKYF_					0	0	0		nc|ENSG00000185862|P34910-2|EVI2B	nc|ENSG00000185862|P34910-2|EVI2B	nc|ENSG00000185862|P34910-2|EVI2B	MSMS	A375_MHC_IP_R2	2	488.660400390625	3	488.571105	1462.69149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.649	1	57.399	56.899	57.899	0.75015								0	0	0	0.16336	1	21414	21414		1.2148	0	1				43517	14815	31898	32153	42446	42446					-0.021352344539991464
RKYWKNLTFVA	11	Unmodified	_RKYWKNLTFVA_					0	0	0		nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;ENST00000489243.5_1_9:6758133-6893415:+|nuORF;ENST00000480996.1_1_9:6805652-6819052:+|nuORF	nc|ENSG00000293552|Q9H3R0-3|KDM4C	nc|ENSG00000293552|Q9H3R0-3|KDM4C	MULTI-SECPEP	A375_MHC_IP_R2	2	713.8275146484375	2	713.403704	1424.79285	-0.61117	-0.00043601	1.1753	0.00083844	0.56409	0.00040243	713.9069518021674	135.64	0.56236	135.78	135.51	136.07	0.13901					14	10	2	0	0	0	0.99955	1	53309	53309		1.1933	0.9575	1	1596300			43518	2723	31899	32154	42447	42447					0.09745005030868015
RLAADDFRV	9	Unmodified	_RLAADDFRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;CON__P05784;ENST00000520711.1_1_8:41368829-41369321:+|nuORF;ENST00000534728.1_1_11:124983810-124984254:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	A375_MHC_IP_R1	1	355.2611389160156	3	354.861207	1061.56179	-0.14177	-5.0307E-05	-0.0062367	-2.2132E-06	-0.148	-5.252E-05	354.8611668205034	46.666	0.7122	46.666	46.395	47.107	0					28	13	3	0	0	0	0.29123	2	16356	16315;16356		23.801	8.0624	1	9879600			43519	2963	31900	32155	42448;42449	42449					0.03347377049021816
RLAADDFRV	9	Unmodified	_RLAADDFRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;CON__P05784;ENST00000520711.1_1_8:41368829-41369321:+|nuORF;ENST00000534728.1_1_11:124983810-124984254:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	A375_MHC_IP_R1	1	531.2051391601562	2	531.788173	1061.56179	-0.72684	-0.00038652	0.063856	3.3958E-05	-0.66298	-0.00035257	531.7881830289224	46.665	0.60656	46.665	46.345	46.952	0					31	11	4	0	0	0	0.18338	1	16361	16361		39.213	16.477	1	20284000			43520	2963	31900	32155	42450	42450					0.03347377049021816
RLAADDFRV	9	Unmodified	_RLAADDFRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;CON__P05784;ENST00000520711.1_1_8:41368829-41369321:+|nuORF;ENST00000534728.1_1_11:124983810-124984254:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-SECPEP	A375_MHC_IP_R2	2	532.1876831054688	2	531.788173	1061.56179	-0.66467	-0.00035346	-0.2132	-0.00011338	-0.87787	-0.00046684	531.7880680218186	45.758	0.65486	46.523	46.15	46.805	0.76519					28	12	3	0	0	0	0.16237	1	17074	17074		55.235	29.835	1	20293000			43521	2963	31900	32155	42451	42451					0.03347377049021816
RLAAFYSQV	9	Unmodified	_RLAAFYSQV_					0	0	0		nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000514938.1_1_22:50943733-50944613:-|nuORF	nc|ENSG00000100258|Q9BU23-3|LMF2	nc|ENSG00000100258|Q9BU23-3|LMF2	MSMS	A375_MHC_IP_R1	1	527.8759765625	2	527.787641	1053.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.598	1	63.598	63.098	64.098	0								0	0	0	0.15071	1	22992	22992		20.415	1.0526	1				43522	2147	31901	32156	42452	42452					0.03609162680118061
RLADLKQLW	9	Unmodified	_RLADLKQLW_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	A375_MHC_IP_R1	1	381.9607849121094	3	381.560869	1141.66078	0.2821	0.00010764	-0.37577	-0.00014338	-0.09367	-3.5741E-05	381.5606839547762	77.094	0.66039	77.094	76.776	77.436	0					19	12	3	0	0	0	0.18338	1	28133	28133		39.213	10.979	1	2084800			43523	3298	31902	32157	42453	42453					0.09561400013922139
RLADLKQLW	9	Unmodified	_RLADLKQLW_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R1	1	572.237060546875	2	571.837665	1141.66078	-0.32397	-0.00018526	-0.27432	-0.00015686	-0.59828	-0.00034212	571.8374993821885	77.108	0.55843	77.108	76.827	77.386	0					25	10	3	0	0	0	0.54812	1	28106	28106		31.268	4.3847	1	5176500			43524	3298	31902	32157	42454	42454					0.09561400013922139
RLADLKQLW	9	Unmodified	_RLADLKQLW_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	A375_MHC_IP_R2	2	381.9609069824219	3	381.560869	1141.66078	-0.040274	-1.5367E-05	-0.032558	-1.2423E-05	-0.072832	-2.779E-05	381.5608332854812	76.177	0.40458	76.917	76.691	77.095	0.74052					15	7	3	0	0	0	0.085252	1	28919	28919		53.317	5.5847	1	2372600			43525	3298	31902	32157	42455	42455					0.09561400013922139
RLAEINREFL	10	Unmodified	_RLAEINREFL_					0	0	0		nc|ENSG00000126878|Q9BQI0-4|AIF1L;ENSG00000126878|ENST00000247291|AIF1L;nc|ENSG00000126878|Q9BQI0-3|AIF1L	nc|ENSG00000126878|Q9BQI0-4|AIF1L	nc|ENSG00000126878|Q9BQI0-4|AIF1L	MULTI-MSMS	A375_MHC_IP_R2	2	421.3067932128906	3	420.906816	1259.69862	-0.50734	-0.00021354	0.096023	4.0417E-05	-0.41132	-0.00017313	420.9067731033002	59.358	0.35252	60.105	59.896	60.249	0.74714					12	6	2	0	0	0	0.17808	1	22486	22486		39.413	5.5914	1	1618500			43526	4067	31903	32158	42456	42456					0.07915866208759326
RLAEINREFL	10	Unmodified	_RLAEINREFL_					0	0	0		nc|ENSG00000126878|Q9BQI0-4|AIF1L;ENSG00000126878|ENST00000247291|AIF1L;nc|ENSG00000126878|Q9BQI0-3|AIF1L	nc|ENSG00000126878|Q9BQI0-4|AIF1L	nc|ENSG00000126878|Q9BQI0-4|AIF1L	MULTI-MATCH	A375_MHC_IP_R1	1		3	420.906816	1259.69862	0.053309	2.2438E-05	0.27887	0.00011738	0.33218	0.00013982	420.9068735468893	60.356	0.35497	60.356	60.159	60.514	0	0.12563	0.00011314	NaN	39.413	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1359100			43527	4067	31903	32158							0.07915866208759326
RLAELEEFI	9	Unmodified	_RLAELEEFI_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	A375_MHC_IP_R2	2	560.7056274414062	2	560.305864	1118.59717	-0.62735	-0.00035151	0.488	0.00027343	-0.13936	-7.8082E-05	560.3061796121091	102.23	1.1171	103	102.57	103.68	0.76428					41	21	3	0	0	0	0.16237	1	38707	38707		78.728	3.799	1	4498300			43528	5230	31904	32159	42457	42457					0.04261994786179457
RLAELKHEL	9	Unmodified	_RLAELKHEL_					0	0	0		ENSG00000070444|ENST00000174618|MNT	ENSG00000070444|ENST00000174618|MNT	ENSG00000070444|ENST00000174618|MNT	MULTI-SECPEP	A375_MHC_IP_R1	1	370.5970764160156	3	370.220624	1107.64004	0.39306	0.00014552	-0.23652	-8.7564E-05	0.15655	5.7957E-05	370.22050692325183	28.52	0.45642	28.52	28.288	28.745	0					20	8	3	0	0	0	0.14273	1	8803	8803		60.899	31.462	1	16556000			43529	1493	31905	32160	42458	42458					0.09052809634295045
RLAEQHVFVD	10	Unmodified	_RLAEQHVFVD_					0	0	0			REV__ENST00000570627.1_1_17:7195008-7196846:-|nuORF	REV__ENST00000570627.1_1_17:7195008-7196846:-|nuORF	MSMS	A375_MHC_IP_R2	2	405.2548522949219	3	405.21565	1212.62512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.862	1	61.607	61.107	62.107	0.74503								0	0	0	0.15191	1	23053	23053		14.218	5.2419	1		+		43530	26278	31906	32161	42459	42459					0.027313177662790622
RLAEVVHEL	9	Unmodified	_RLAEVVHEL_					0	0	0		nc|ENSG00000135164|Q9Y222-5|DMTF1;ENSG00000135164|ENST00000331242|DMTF1;ENST00000582887.1_1_7:86811523-86815316:+|nuORF;ENST00000425406.5_1_7:86811523-86817410:+|nuORF;ENST00000447863.5_1_7:86811523-86824453:+|nuORF	nc|ENSG00000135164|Q9Y222-5|DMTF1	nc|ENSG00000135164|Q9Y222-5|DMTF1	MULTI-SECPEP	A375_MHC_IP_R2	2	533.7057495117188	2	533.306198	1064.59784	-0.60818	-0.00032435	-0.20703	-0.00011041	-0.81521	-0.00043476	533.3059570947927	46.523	0.66118	47.288	46.805	47.466	0.76519					31	12	4	0	0	0	0.36673	1	17389	17389		38.615	24.709	1	29756000			43531	4654	31907	32162	42460	42460					0.06812834225888764
RLAGKVPGL	9	Unmodified	_RLAGKVPGL_					0	0	0		ATXN2L|p.I526L|1|0.31|ENSG00000168488|chr16:28832555-28832555|A/C|missense_variant	ATXN2L|p.I526L|1|0.31|ENSG00000168488|chr16:28832555-28832555|A/C|missense_variant	ATXN2L|p.I526L|1|0.31|ENSG00000168488|chr16:28832555-28832555|A/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	456.1949768066406	2	455.795269	909.575986	-0.42084	-0.00019182	-0.029936	-1.3645E-05	-0.45077	-0.00020546	455.79518280724653	34.672	0.55559	35.436	35.222	35.778	0.76338					20	10	3	0	0	0	0.43707	1	12553	12553		28.487	0	1	3326000			43532	216	31908	32163	42461	42461					0.11758074267993379
RLAGPGGI	8	Unmodified	_RLAGPGGI_					0	0	0			REV__nc|ENSG00000214279|Q4G0T1-2|SCART1	REV__nc|ENSG00000214279|Q4G0T1-2|SCART1	MSMS	A375_MHC_IP_R1	1	370.6225280761719	2	370.724313	739.434072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.38	1	143.38	142.88	143.88	0								0	0	0	0.16876	1	55006	55006		0	0	1		+		43533	22650	31909	32164	42462	42462					0.05393281245676462
RLAHQSWAL	9	Unmodified	_RLAHQSWAL_					0	0	0		ENSG00000196968|ENST00000372841|FUT11;nc|ENSG00000196968|Q495W5-2|FUT11;ENST00000465695.1_1_10:75532322-75533104:+|nuORF	ENSG00000196968|ENST00000372841|FUT11	ENSG00000196968|ENST00000372841|FUT11	MULTI-MSMS	A375_MHC_IP_R2	2	361.601318359375	3	361.201564	1080.58286	-0.30126	-0.00010882	0.099804	3.6049E-05	-0.20146	-7.2767E-05	361.20149675433873	50.733	0.50447	51.488	51.26	51.765	0.75406					16	9	3	0	0	0	0.65721	1	19110	19110		7.1017	0.86737	1	2617500			43534	9096	31910	32165	42463	42463					0.04579387148555725
RLAHYIDRV	9	Unmodified	_RLAHYIDRV_					0	0	0		ENSG00000176619|ENST00000325327|LMNB2	ENSG00000176619|ENST00000325327|LMNB2	ENSG00000176619|ENST00000325327|LMNB2	MULTI-SECPEP	A375_MHC_IP_R1	1	381.95263671875	3	381.552485	1141.63563	-0.048537	-1.852E-05	0.39857	0.00015208	0.35004	0.00013356	381.5525981666725	29.125	0.70842	29.125	28.745	29.453	0					32	13	5	0	0	0	0.091583	1	9071	9071		72.59	36.083	1	31452000			43535	8028	31911	32166	42464	42464					0.07047345211344691
RLAKLKRRAKL	11	Unmodified	_RLAKLKRRAKL_					0	0	0			REV__MYO5B|p.E902K|1|0.27|ENSG00000167306|chr18:49902701-49902701|C/T|missense_variant	REV__MYO5B|p.E902K|1|0.27|ENSG00000167306|chr18:49902701-49902701|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	677.0303955078125	2	676.96988	1351.92521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.483	1	89.483	88.983	89.983	0								0	0	0	0.16354	1	32871	32871		0.30703	0	1		+		43536	27071	31912	32167	42465	42465					0.2633207455835418
RLALEGLRRV	10	Unmodified	_RLALEGLRRV_					0	0	0			REV__ENSG00000136883|ENST00000640217|KIF12	REV__ENSG00000136883|ENST00000640217|KIF12	MSMS	A375_MHC_IP_R2	2	394.97265625	3	394.919168	1181.73567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.032	1	19.635	19.135	20.135	0.60308								0	0	0	0.15593	1	5780	5780		1.5923	0.13716	1		+		43537	18970	31913	32168	42466	42466					0.15207582545167497
RLALQLDGV	9	Unmodified	_RLALQLDGV_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	A375_MHC_IP_R1	1	493.1949462890625	2	492.795466	983.57638	-0.1899	-9.358E-05	-0.075887	-3.7397E-05	-0.26578	-0.00013098	492.79520467487225	78.422	0.70838	78.422	78.099	78.807	0					17	13	2	0	0	0	0.030038	1	28612	28612		74.929	6.8483	1	1654600			43538	8598	31914	32169	42467	42467					0.08393449197183145
RLALQLDGV	9	Unmodified	_RLALQLDGV_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	A375_MHC_IP_R2	2	492.9986267089844	2	492.795466	983.57638	-0.51663	-0.00025459	-0.24279	-0.00011965	-0.75942	-0.00037424	492.79544894707976	77.411	0.55887	78.154	77.857	78.416	0.74293					17	10	3	0	0	0	0.44024	1	29446	29446		22.736	2.2827	1	1890500			43539	8598	31914	32169	42468	42468					0.08393449197183145
RLAPEIITA	9	Unmodified	_RLAPEIITA_					0	0	0		ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	MULTI-MSMS	A375_MHC_IP_R2	2	492.69744873046875	2	492.297842	982.581131	-0.78138	-0.00038467	0.93379	0.0004597	0.15241	7.503E-05	492.29860302238524	61.929	0.80681	62.672	62.118	62.925	0.74263					28	15	3	0	0	0	0.082375	1	23465	23465		53.833	9.9745	1	5326900			43540	7803	31915	32170	42469	42469					0.08914333339942004
RLAPEIITA	9	Unmodified	_RLAPEIITA_					0	0	0		ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	MULTI-MATCH	A375_MHC_IP_R1	1		2	492.297842	982.581131	-0.23213	-0.00011428	0.74962	0.00036904	0.51749	0.00025476	492.2987935721153	62.89	0.71774	62.89	62.351	63.069	0	0.1088	-0.00011803	NaN	53.833	32	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5323800			43541	7803	31915	32170							0.08914333339942004
RLAPFGVGV	9	Unmodified	_RLAPFGVGV_					0	0	0		ENST00000478234.5_1_5:176730382-176730568:-|nuORF	ENST00000478234.5_1_5:176730382-176730568:-|nuORF	ENST00000478234.5_1_5:176730382-176730568:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	458.67401123046875	2	458.27417	914.533787	-0.30139	-0.00013812	0.29744	0.00013631	-0.00395	-1.8102E-06	458.27432285549924	80.026	0.76569	80.026	79.574	80.34	0					20	14	2	0	0	0	0.67483	1	29216	29216		20.454	10.27	1	2552000			43542	12460	31916	32171	42470	42470					0.07310098859625214
RLAPFGVGV	9	Unmodified	_RLAPFGVGV_					0	0	0		ENST00000478234.5_1_5:176730382-176730568:-|nuORF	ENST00000478234.5_1_5:176730382-176730568:-|nuORF	ENST00000478234.5_1_5:176730382-176730568:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	458.673828125	2	458.27417	914.533787	-0.23994	-0.00010996	-0.31336	-0.0001436	-0.55329	-0.00025356	458.27404380325277	78.989	1.064	79.734	79.185	80.249	0.74474					26	20	2	0	0	0	0.67483	1	30000	30000		14.838	1.3304	1	2283200			43543	12460	31916	32171	42471	42471					0.07310098859625214
RLAPNFRW	8	Unmodified	_RLAPNFRW_					0	0	0		ENSG00000166681|ENST00000361298|BEX3;nc|ENSG00000166681|Q00994|BEX3	ENSG00000166681|ENST00000361298|BEX3	ENSG00000166681|ENST00000361298|BEX3	MULTI-MSMS	A375_MHC_IP_R2	2	530.69580078125	2	530.295968	1058.57738	-0.92664	-0.00049139	-0.044125	-2.3399E-05	-0.97076	-0.00051479	530.295847469293	58.495	0.66165	59.244	58.829	59.491	0.74894					23	12	3	0	0	0	0.70783	1	22127	22127		32.305	3.8186	1	3907000			43544	7100	31917	32172	42472	42472					0.05043708356743082
RLAPPPPPA	9	Unmodified	_RLAPPPPPA_					0	0	0		ENSG00000156860|ENST00000356166|FBRS;nc|ENSG00000156860|Q9HAH7|FBRS;nc|ENSG00000156860|Q9HAH7-1|FBRS;ENST00000494101.1_1_16:30680055-30680963:+|nuORF	ENSG00000156860|ENST00000356166|FBRS	ENSG00000156860|ENST00000356166|FBRS	MULTI-SECPEP	A375_MHC_IP_R2	2	458.1190490722656	2	458.27417	914.533787	-0.54086	-0.00024786	0.071247	3.2651E-05	-0.46961	-0.00021521	458.2742209222654	34.499	0.60926	35.251	35.057	35.666	0.75225					13	11	2	0	0	0	0.65246	1	12368	12368		15.847	4.2069	1	1507100			43545	6212	31918	32173	42473	42473					0.07310098859602476
RLAQEGIYTL	10	Unmodified	_RLAQEGIYTL_					0	0	0		nc|ENSG00000037474|Q08J23-3|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;ENST00000513888.5_1_5:6600041-6604993:-|nuORF	nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	MULTI-SECPEP	A375_MHC_IP_R1	1	582.723876953125	2	582.324588	1162.63462	-0.45553	-0.00026527	0.21811	0.00012701	-0.23742	-0.00013826	582.3245517693781	66.704	0.6122	66.704	66.428	67.04	0					21	11	3	0	0	0	0.38298	1	24126	24126		59.368	15.51	1	5808100			43546	1146	31919	32174	42474	42474					0.059810860518155096
RLAQEGIYTL	10	Unmodified	_RLAQEGIYTL_					0	0	0		nc|ENSG00000037474|Q08J23-3|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;ENST00000513888.5_1_5:6600041-6604993:-|nuORF	nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	MULTI-MSMS	A375_MHC_IP_R2	2	582.7239379882812	2	582.324588	1162.63462	-0.57538	-0.00033506	-0.21529	-0.00012537	-0.79067	-0.00046042	582.3244302657058	65.762	0.55949	66.5	66.222	66.782	0.73811					21	10	3	0	0	0	0.17879	1	24921	24921		51.415	9.4597	1	6002500			43547	1146	31919	32174	42475	42475					0.059810860518155096
RLARSRFHRSR	11	Unmodified	_RLARSRFHRSR_					0	0	0		ENST00000591601.5_1_19:2038744-2038972:-|nuORF	ENST00000591601.5_1_19:2038744-2038972:-|nuORF	ENST00000591601.5_1_19:2038744-2038972:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	481.68310546875	3	481.283503	1440.82868	-0.70695	-0.00034025	0.11631	5.5979E-05	-0.59064	-0.00028427	481.2834421077206	138.26	0.65973	138.26	138.05	138.71	0					21	12	2	0	0	0	0.73902	1	53237	53237		0.08335	0	1	1595000			43548	13803	31920	32175	42476	42476					0.12589900051102632
RLARSRFHRSR	11	Unmodified	_RLARSRFHRSR_					0	0	0		ENST00000591601.5_1_19:2038744-2038972:-|nuORF	ENST00000591601.5_1_19:2038744-2038972:-|nuORF	ENST00000591601.5_1_19:2038744-2038972:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	482.01800537109375	3	481.283503	1440.82868	-0.71222	-0.00034278	0.46832	0.00022539	-0.2439	-0.00011739	481.2835556653263	139	1.3172	139	138.61	139.93	0					65	25	4	0	0	0	0.73902	1	53445	53445		0.08335	0	1	3791900			43549	13803	31920	32175	42477	42477					0.12589900051102632
RLARSRFHRSR	11	Unmodified	_RLARSRFHRSR_					0	0	0		ENST00000591601.5_1_19:2038744-2038972:-|nuORF	ENST00000591601.5_1_19:2038744-2038972:-|nuORF	ENST00000591601.5_1_19:2038744-2038972:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	481.6834716796875	3	481.283503	1440.82868	-0.37942	-0.00018261	0.20425	9.8303E-05	-0.17517	-8.4304E-05	481.28338843317096	138.99	2.0692	139.05	137.94	140.01	0.059906					99	40	4	0	0	0	0.73902	1	54487	54487		0.08335	0	1	4594900			43550	13803	31920	32175	42478	42478					0.12589900051102632
RLARVLRTL	9	Unmodified	_RLARVLRTL_					0	0	0			REV__ENSG00000104899|ENST00000221496|AMH	REV__ENSG00000104899|ENST00000221496|AMH	MSMS	A375_MHC_IP_R1	1	366.60980224609375	3	366.580375	1096.7193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.469	1	47.469	46.969	47.969	0								0	0	0	0.15486	1	16700	16700		10.8	0	1		+		43551	17350	31921	32176	42479	42479					0.17480501379077396
RLASLQSEV	9	Unmodified	_RLASLQSEV_					0	0	0		ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	502.18243408203125	2	501.782556	1001.55056	-0.13947	-6.9983E-05	-0.23193	-0.00011638	-0.3714	-0.00018636	501.7824825297089	42.917	1.2195	42.917	42.487	43.706	0					73	23	5	0	0	0	0.04447	1	15078	15078		66.457	14.188	1	249010000			43552	11502	31922	32177	42480	42480					0.04984554954910436
RLASLQSEV	9	Unmodified	_RLASLQSEV_					0	0	0		ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	502.1822509765625	2	501.782556	1001.55056	-0.55846	-0.00028022	-0.096616	-4.848E-05	-0.65507	-0.0003287	501.78253729871193	42.112	1.7812	42.884	41.792	43.573	0.7724					87	34	6	0	0	0	0.0098926	3	15597	15597;15618;15723		118.07	29.91	1	258150000			43553	11502	31922	32177	42481;42482;42483	42481					0.04984554954910436
RLASTLVHL	9	Unmodified	_RLASTLVHL_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	A375_MHC_IP_R1	1	505.71099853515625	2	505.311284	1008.60801	-0.29024	-0.00014666	0.22263	0.0001125	-0.067613	-3.4165E-05	505.3113439743758	54.541	0.76178	54.541	54.263	55.025	0					31	14	3	0	0	0	0.5212	1	19465	19465		32.786	19.743	1	18093000			43554	5230;1491	31923	32178	42484	42484					0.10405441951138528
RLASYLDRV	9	Unmodified	_RLASYLDRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	A375_MHC_IP_R1	1	365.27679443359375	3	364.876857	1091.60874	0.72581	0.00026483	-0.47652	-0.00017387	0.24929	9.0959E-05	364.87665070183175	49.067	0.55672	49.067	48.831	49.387	0					27	10	3	0	0	0	0.10518	1	17318	17318		49.742	31.021	1	7256600			43555	2963	31924	32179	42485	42485					0.06660236600191638
RLASYLDRV	9	Unmodified	_RLASYLDRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-SECPEP	A375_MHC_IP_R1	1	547.2113647460938	2	546.811648	1091.60874	-0.035605	-1.9469E-05	-0.58115	-0.00031778	-0.61676	-0.00033725	546.8113922598989	49.008	1.8316	49.008	48.729	50.561	0					95	35	5	0	0	0	0.078412	1	17278	17278		74.772	53.235	1	408790000			43556	2963	31924	32179	42486	42486					0.06660236600191638
RLASYLDRV	9	Unmodified	_RLASYLDRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	A375_MHC_IP_R2	2	547.2111206054688	2	546.811648	1091.60874	-0.69983	-0.00038267	-0.043967	-2.4042E-05	-0.74379	-0.00040672	546.8116801683473	48.096	2.5842	48.858	48.429	51.013	0.76128					118	50	5	0	0	0	0.018959	1	17975	17975		73.196	19.363	1	440840000			43557	2963	31924	32179	42487	42487					0.06660236600191638
RLASYLDRV	9	Unmodified	_RLASYLDRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	A375_MHC_IP_R2	2	365.27679443359375	3	364.876857	1091.60874	0.11008	4.0164E-05	-0.062274	-2.2722E-05	0.047802	1.7442E-05	364.8768328362603	48.096	0.75483	48.858	48.429	49.184	0.76128					31	14	3	0	0	0	0.021859	1	18019	18019		81.915	58.114	1	17983000			43558	2963	31924	32179	42488	42488					0.06660236600191638
RLATLKSTV	9	Unmodified	_RLATLKSTV_					0	0	0		ENST00000495744.5_1_3:142315288-142364209:+|nuORF;ENST00000483373.5_1_3:142315288-142364209:+|nuORF	ENST00000495744.5_1_3:142315288-142364209:+|nuORF	ENST00000495744.5_1_3:142315288-142364209:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	495.2109375	2	494.811116	987.60768	-0.48533	-0.00024015	-0.066976	-3.314E-05	-0.55231	-0.00027329	494.81104521063685	27.559	0.50569	27.559	27.381	27.887	0					21	9	3	0	0	0	0.062502	1	8390	8390		74.2	4.8614	1	12304000			43559	12541	31925	32180	42489	42489					0.11338022231279865
RLATLKSTV	9	Unmodified	_RLATLKSTV_					0	0	0		ENST00000495744.5_1_3:142315288-142364209:+|nuORF;ENST00000483373.5_1_3:142315288-142364209:+|nuORF	ENST00000495744.5_1_3:142315288-142364209:+|nuORF	ENST00000495744.5_1_3:142315288-142364209:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	495.21063232421875	2	494.811116	987.60768	-0.75572	-0.00037394	0.035052	1.7344E-05	-0.72067	-0.00035659	494.8110981715609	26.78	0.56162	27.44	27.212	27.773	0.65992					21	10	3	0	0	0	0.09145	1	9087	9087		78.06	8.7223	1	8136100			43560	12541	31925	32180	42490	42490					0.11338022231279865
RLAVTTHELP	10	Unmodified	_RLAVTTHELP_					0	0	0		F2|p.G231E|1|0.35|ENSG00000180210|chr11:46725991-46725991|G/A|missense_variant	F2|p.G231E|1|0.35|ENSG00000180210|chr11:46725991-46725991|G/A|missense_variant	F2|p.G231E|1|0.35|ENSG00000180210|chr11:46725991-46725991|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	379.2801208496094	3	379.552262	1135.63496	-0.19048	-7.2295E-05	0.18395	6.9817E-05	-0.0065298	-2.4784E-06	379.5522765224302	51.671	0.45692	52.423	52.169	52.626	0.75225					16	8	3	0	0	0	0.65751	1	19457	19457		16.566	5.048	1	2601800			43561	13968	31926	32181	42491	42491					0.07256505771647426
RLAVYIDKV	9	Unmodified	_RLAVYIDKV_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;LMNB1|p.K222Efs*3|1|0.38|ENSG00000113368|chr5:126810198-126810199|-/G|frameshift_variant	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-SECPEP	A375_MHC_IP_R1	1	539.2265014648438	2	538.826766	1075.63898	-0.5636	-0.00030368	0.16634	8.9627E-05	-0.39726	-0.00021406	538.8268289203438	51.246	0.9134	51.246	50.966	51.879	0					40	17	4	0	0	0	0.019499	1	18158	18158		114.2	47.745	1	35701000			43562	3145	31927	32182	42492	42492					0.1041859526535518
RLAVYIDKV	9	Unmodified	_RLAVYIDKV_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;LMNB1|p.K222Efs*3|1|0.38|ENSG00000113368|chr5:126810198-126810199|-/G|frameshift_variant	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-SECPEP	A375_MHC_IP_R2	2	539.2261352539062	2	538.826766	1075.63898	-1.0335	-0.00055688	0.43602	0.00023494	-0.59749	-0.00032194	538.8269287170731	50.278	1.0621	51.032	50.804	51.866	0.75406					45	20	4	0	0	0	0.03341	1	18886	18886		103.42	27.659	1	32728000			43563	3145	31927	32182	42493	42493					0.1041859526535518
RLAVYIDRV	9	Unmodified	_RLAVYIDRV_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENST00000470199.2_1_1:156084502-156100509:+|nuORF	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-MSMS	A375_MHC_IP_R1	1	369.28875732421875	3	368.888986	1103.64513	0.20346	7.5053E-05	0.10704	3.9486E-05	0.3105	0.00011454	368.8889997011348	52.515	1.013	52.515	52.237	53.25	0					40	19	3	0	0	0	0.058226	2	18659	18659;18732		61.09	35.069	1	43535000			43564	6442	31928	32183	42494;42495	42494					0.09745113496887825
RLAVYIDRV	9	Unmodified	_RLAVYIDRV_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENST00000470199.2_1_1:156084502-156100509:+|nuORF	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-SECPEP	A375_MHC_IP_R1	1	553.2296142578125	2	552.82984	1103.64513	-0.63378	-0.00035037	0.01517	8.3866E-06	-0.61861	-0.00034198	552.8299750797341	52.516	1.4195	52.516	52.237	53.656	0					85	27	5	0	0	0	0.011143	1	18639	18639		125.04	56.957	1	667140000			43565	6442	31928	32183	42496	42496					0.09745113496887825
RLAVYIDRV	9	Unmodified	_RLAVYIDRV_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENST00000470199.2_1_1:156084502-156100509:+|nuORF	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-MSMS	A375_MHC_IP_R2	2	553.73095703125	2	552.82984	1103.64513	-1.0382	-0.00057397	-0.16038	-8.866E-05	-1.1986	-0.00066263	552.8298891375291	51.645	2.7478	52.398	52.068	54.816	0.75225					126	53	3	0	0	0	0.0093675	1	19385	19385		114.19	60.354	1	714080000			43566	6442	31928	32183	42497	42497					0.09745113496887825
RLAVYIDRV	9	Unmodified	_RLAVYIDRV_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;ENST00000470199.2_1_1:156084502-156100509:+|nuORF	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-MSMS	A375_MHC_IP_R2	2	369.2888488769531	3	368.888986	1103.64513	-0.0045378	-1.6739E-06	-0.29775	-0.00010984	-0.30229	-0.00011151	368.88885799474673	51.647	1.0152	52.399	52.068	53.083	0.75225					35	19	2	0	0	0	0.017012	1	19400	19400		87.258	48.643	1	56942000			43567	6442	31928	32183	42498	42498					0.09745113496887825
RLAWSLSHVK	10	Unmodified	_RLAWSLSHVK_					0	0	0			REV__ENST00000489684.2_1_3:49044864-49050780:+|nuORF	REV__ENST00000489684.2_1_3:49044864-49050780:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	398.9230041503906	3	399.568135	1195.68258	-0.52662	-0.00021042	-0.55793	-0.00022293	-1.0845	-0.00043335	399.567714581857	41.672	0.46107	41.672	41.419	41.88	0					11	8	2	0	0	0	0.94521	1	14463	14463		4.7159	4.7159	1	1634700	+		43568	21499	31929	32184	42499	42499					0.09256204762482412
RLAWSLSHVK	10	Unmodified	_RLAWSLSHVK_					0	0	0			REV__ENST00000489684.2_1_3:49044864-49050780:+|nuORF	REV__ENST00000489684.2_1_3:49044864-49050780:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	399.568135	1195.68258	-0.23288	-9.305E-05	-0.99636	-0.00039811	-1.2292	-0.00049116	399.56766537386756	40.74	0.40811	41.515	41.335	41.743	0.77451	-0.078605	-0.00012149	NaN	4.7159	12	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2787400	+		43569	21499	31929	32184							0.09256204762482412
RLCENRWV	8	Unmodified	_RLCENRWV_					0	0	0			REV__ENSG00000197653|ENST00000673944|DNAH10	REV__ENSG00000197653|ENST00000673944|DNAH10	MULTI-SECPEP	A375_MHC_IP_R1	1	358.62060546875	3	359.187037	1074.53928	-0.057725	-2.0734E-05	-0.64039	-0.00023002	-0.69812	-0.00025075	359.1868826757932	41.828	0.25641	41.828	41.725	41.982	0					6	4	2	0	0	0	0.972	1	14476	14476		3.9444	2.7511	1	1004200	+		43570	22307	31930	32185	42500	42500					0.004994543797693041
RLCQQLVGF	9	Unmodified	_RLCQQLVGF_					0	0	0			REV__ENST00000445551.1_1_1:47900027-47900312:-|nuORF	REV__ENST00000445551.1_1_1:47900027-47900312:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	355.4598083496094	3	355.195421	1062.56443	-0.21043	-7.4743E-05	0.16594	5.894E-05	-0.044491	-1.5803E-05	355.19552593320896	45.699	0.60336	46.464	46.252	46.855	0.76519					16	11	2	0	0	0	0.68216	1	17121	17121		5.2969	5.2969	1	4449600	+		43571	24845	31931	32186	42501	42501					0.03565509182340065
RLCRSYEEI	9	Unmodified	_RLCRSYEEI_					0	0	0		ENSG00000168418|ENST00000308251|KCNG4;nc|ENSG00000168418|Q8TDN1-2|KCNG4	ENSG00000168418|ENST00000308251|KCNG4	ENSG00000168418|ENST00000308251|KCNG4	MSMS	A375_MHC_IP_R2	2	390.14349365234375	3	390.197491	1167.57064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.47	1	142.5	142	143	0.030731								0	0	0	0.15486	1	55696	55696		2.4985	0	1				43572	7299	31932	32187	42502	42502					-0.006440173767941815
RLDAVTLLY	9	Unmodified	_RLDAVTLLY_					0	0	0		ENSG00000100036|ENST00000343605|SLC35E4	ENSG00000100036|ENST00000343605|SLC35E4	ENSG00000100036|ENST00000343605|SLC35E4	MULTI-MSMS	A375_MHC_IP_R1	1	532.71044921875	2	532.310949	1062.60735	-0.72683	-0.0003869	0.62721	0.00033387	-0.099615	-5.3026E-05	532.3111928420537	95.322	0.76253	95.322	94.802	95.565	0					39	14	5	0	0	0	0.36834	1	34987	34987		26.268	0.86883	1	10903000			43573	2106	31933	32188	42503	42503					0.0785460251142922
RLDAVTLLY	9	Unmodified	_RLDAVTLLY_					0	0	0		ENSG00000100036|ENST00000343605|SLC35E4	ENSG00000100036|ENST00000343605|SLC35E4	ENSG00000100036|ENST00000343605|SLC35E4	MULTI-MSMS	A375_MHC_IP_R2	2	532.7110595703125	2	532.310949	1062.60735	-0.48215	-0.00025665	0.059467	3.1655E-05	-0.42268	-0.000225	532.3110397554559	94.412	0.65878	95.156	94.768	95.426	0.74474					36	12	4	0	0	0	0.39657	1	35823	35823		32.786	0.4802	1	9094600			43574	2106	31933	32188	42504	42504					0.0785460251142922
RLDDAIHVL	9	Unmodified	_RLDDAIHVL_					0	0	0		ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-5|TCF4;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000140262|Q99081-4|TCF12;ENST00000562680.5_1_18:52899738-53018213:-|nuORF	ENSG00000140262|ENST00000333725|TCF12	ENSG00000140262|ENST00000333725|TCF12	MULTI-SECPEP	A375_MHC_IP_R1	1	526.6981201171875	2	526.298373	1050.58219	-0.52902	-0.00027842	-0.029237	-1.5388E-05	-0.55825	-0.00029381	526.2983497880917	64.573	0.86332	64.573	64.242	65.105	0					39	16	4	0	0	0	0.20451	1	23329	23329		57.722	19.546	1	21433000			43575	5131	31934	32189	42505	42505					0.05892547708845086
RLDDAIHVL	9	Unmodified	_RLDDAIHVL_					0	0	0		ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-5|TCF4;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000140262|Q99081-4|TCF12;ENST00000562680.5_1_18:52899738-53018213:-|nuORF	ENSG00000140262|ENST00000333725|TCF12	ENSG00000140262|ENST00000333725|TCF12	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1820068359375	2	526.298373	1050.58219	-0.39787	-0.0002094	-0.45669	-0.00024035	-0.85456	-0.00044975	526.2981197034214	63.66	0.76194	64.4	64.038	64.8	0.74022					35	14	4	0	0	0	0.59614	1	24109	24109		28.495	12.345	1	22214000			43576	5131	31934	32189	42506	42506					0.05892547708845086
RLDDHALTGA	10	Unmodified	_RLDDHALTGA_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-SECPEP	A375_MHC_IP_R2	2	535.15087890625	2	534.775262	1067.53597	-1.0488	-0.00056089	-1.0903	-0.00058308	-2.1392	-0.001144	534.7751287269296	28.199	0.25363	28.878	28.706	28.96	0.67857					7	4	2	0	0	0	0.77998	1	9706	9706		18.721	0	1	1070800			43577	8524	31935	32190	42507	42507					0.004904828067537892
RLDDKKFLY	9	Unmodified	_RLDDKKFLY_					0	0	0		nc|ENSG00000163946|Q9UK61-2|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-2|TASOR	nc|ENSG00000163946|Q9UK61-2|TASOR	MULTI-SECPEP	A375_MHC_IP_R1	1	400.29241943359375	3	399.892396	1196.65536	0.16006	6.4007E-05	-0.087449	-3.497E-05	0.072612	2.9037E-05	399.8923167270395	38.895	0.60951	38.895	38.679	39.289	0					30	11	4	0	0	0	0.050514	1	13224	13224		85.764	50.152	1	20091000			43578	6751	31936	32191	42508	42508					0.06489676431465341
RLDDKKFLY	9	Unmodified	_RLDDKKFLY_					0	0	0		nc|ENSG00000163946|Q9UK61-2|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-2|TASOR	nc|ENSG00000163946|Q9UK61-2|TASOR	MULTI-SECPEP	A375_MHC_IP_R2	2	400.29241943359375	3	399.892396	1196.65536	-0.27431	-0.00010969	0.14255	5.7004E-05	-0.13176	-5.2688E-05	399.89240550246603	37.976	0.66588	38.751	38.534	39.2	0.77451					31	12	4	0	0	0	0.036647	1	13927	13927		104.48	75.047	1	20916000			43579	6751	31936	32191	42509	42509					0.06489676431465341
RLDDNIRTV	9	Unmodified	_RLDDNIRTV_					0	0	0		ENSG00000141252|ENST00000437048|VPS53;VPS53|p.Y508*|1|0.5|ENSG00000141252|chr17:562535-562535|G/-|frameshift_variant;nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENST00000575207.5_1_17:560762-617949:-|nuORF	ENSG00000141252|ENST00000437048|VPS53	ENSG00000141252|ENST00000437048|VPS53	MULTI-SECPEP	A375_MHC_IP_R1	1	551.7039794921875	2	551.304187	1100.59382	-0.48949	-0.00026986	0.20901	0.00011523	-0.28049	-0.00015463	551.3042366626701	31.685	0.66112	31.685	31.414	32.075	0					40	12	5	0	0	0	0.064556	1	10129	10129		68.76	33.828	1	39538000			43580	5222	31937	32192	42510	42510					0.04754744732167637
RLDDNIRTV	9	Unmodified	_RLDDNIRTV_					0	0	0		ENSG00000141252|ENST00000437048|VPS53;VPS53|p.Y508*|1|0.5|ENSG00000141252|chr17:562535-562535|G/-|frameshift_variant;nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENST00000575207.5_1_17:560762-617949:-|nuORF	ENSG00000141252|ENST00000437048|VPS53	ENSG00000141252|ENST00000437048|VPS53	MULTI-SECPEP	A375_MHC_IP_R2	2	551.703857421875	2	551.304187	1100.59382	-0.81152	-0.0004474	0.07838	4.3211E-05	-0.73314	-0.00040418	551.304204723231	30.925	0.55749	31.643	31.417	31.974	0.71857					32	10	4	0	0	0	0.31976	1	10884	10884		44.392	19.401	1	44310000			43581	5222	31937	32192	42511	42511					0.04754744732167637
RLDDPSGSNY	10	Unmodified	_RLDDPSGSNY_					0	0	0		ENSG00000108786|ENST00000585807|HSD17B1	ENSG00000108786|ENST00000585807|HSD17B1	ENSG00000108786|ENST00000585807|HSD17B1	MULTI-MSMS	A375_MHC_IP_R1	1	562.6535034179688	2	562.25436	1122.49417	-0.52563	-0.00029554	-0.21014	-0.00011815	-0.73577	-0.00041369	562.2541965616329	27.485	0.45447	27.485	27.28	27.735	0					25	8	4	0	0	0	0.042457	1	8334	8334		78.06	46.792	1	6667600			43582	2835	31938	32193	42512	42512					-0.062181176724152465
RLDDPSGSNY	10	Unmodified	_RLDDPSGSNY_					0	0	0		ENSG00000108786|ENST00000585807|HSD17B1	ENSG00000108786|ENST00000585807|HSD17B1	ENSG00000108786|ENST00000585807|HSD17B1	MULTI-MSMS	A375_MHC_IP_R2	2	562.6536254882812	2	562.25436	1122.49417	-0.75181	-0.00042271	0.36974	0.00020789	-0.38207	-0.00021482	562.2545552589214	26.905	0.46172	27.565	27.363	27.825	0.65992					22	8	3	0	0	0	0.0044556	1	9139	9139		100.71	58.869	1	6031800			43583	2835	31938	32193	42513	42513					-0.062181176724152465
RLDDSLLYL	9	Unmodified	_RLDDSLLYL_					0	0	0		ENSG00000115364|ENST00000393909|MRPL19	ENSG00000115364|ENST00000393909|MRPL19	ENSG00000115364|ENST00000393909|MRPL19	MULTI-MSMS	A375_MHC_IP_R1	1	554.7059326171875	2	554.305864	1106.59717	-0.3184	-0.00017649	0.030408	1.6856E-05	-0.28799	-0.00015963	554.3058083248226	107.31	1.0727	107.31	106.93	108	0					47	20	4	0	0	0	0.11638	1	39326	39326		60.074	7.8056	1	21721000			43584	3303	31939	32194	42514	42514					0.04813994786195508
RLDDSLLYL	9	Unmodified	_RLDDSLLYL_					0	0	0		ENSG00000115364|ENST00000393909|MRPL19	ENSG00000115364|ENST00000393909|MRPL19	ENSG00000115364|ENST00000393909|MRPL19	MULTI-MSMS	A375_MHC_IP_R2	2	554.7056274414062	2	554.305864	1106.59717	-0.81883	-0.00045388	0.3583	0.00019861	-0.46053	-0.00025527	554.3059710385194	106.39	1.0669	107.15	106.78	107.85	0.75977					49	20	4	0	0	0	0.11638	1	40170	40170		60.074	2.6026	1	17244000			43585	3303	31939	32194	42515	42515					0.04813994786195508
RLDEAAQRL	9	Unmodified	_RLDEAAQRL_					0	0	0		ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7690973-7692503:-|nuORF	ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	MULTI-SECPEP	A375_MHC_IP_R1	1	536.6983642578125	2	536.298904	1070.58326	-0.8063	-0.00043242	-0.27465	-0.00014729	-1.0809	-0.00057971	536.2987247401518	27.231	0.40558	27.231	27.128	27.533	0					18	7	3	0	0	0	0.67471	1	8292	8292		12.873	5.5834	1	5328400			43586	1640	31940	32195	42516	42516					0.050787620777555276
RLDEAAQRL	9	Unmodified	_RLDEAAQRL_					0	0	0		ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7690973-7692503:-|nuORF	ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	MULTI-MSMS	A375_MHC_IP_R2	2	536.6980590820312	2	536.298904	1070.58326	-1.2233	-0.00065603	-0.21999	-0.00011798	-1.4433	-0.00077402	536.2987364106392	26.622	0.35668	27.281	27.109	27.466	0.65992					16	6	3	0	0	0	0.52197	1	9024	9024		18.721	1.2786	1	6050300			43587	1640	31940	32195	42517	42517					0.050787620777555276
RLDEAAQRL	9	Unmodified	_RLDEAAQRL_					0	0	0		ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7690973-7692503:-|nuORF	ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	536.298904	1070.58326	-1.2233	-0.00065603	-0.21999	-0.00011798	-1.4433	-0.00077402	536.2987364106392	26.622	0.35668	27.281	27.109	27.466	0.65992	0.025015	3.1729E-05	NaN	18.721	16	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6050300			43588	1640	31940	32195							0.050787620777555276
RLDELGGVYL	10	Unmodified	_RLDELGGVYL_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-MSMS	A375_MHC_IP_R1	1	567.7586669921875	2	567.811313	1133.60807	-0.10123	-5.7477E-05	-0.29604	-0.0001681	-0.39727	-0.00022557	567.8111518704177	92.643	2.3847	92.643	91.706	94.09	0					107	46	3	0	0	0	0.0035315	2	34054	33973;34054		137.42	65.502	1	178330000			43589	3557	31941	32196	42518;42519	42519					0.04661397160475644
RLDELGGVYL	10	Unmodified	_RLDELGGVYL_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-MSMS	A375_MHC_IP_R2	2	567.7592163085938	2	567.811313	1133.60807	-0.27871	-0.00015825	-0.19874	-0.00011285	-0.47744	-0.0002711	567.8112280385346	91.886	2.1775	92.622	91.718	93.896	0.7359					121	42	5	0	0	0	0.023568	1	34943	34943		83.429	29.596	1	167510000			43590	3557	31941	32196	42520	42520					0.04661397160475644
RLDETIQAI	9	Unmodified	_RLDETIQAI_					0	0	0		ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	MULTI-SECPEP	A375_MHC_IP_R1	1	530.1954345703125	2	529.795663	1057.57677	-0.56695	-0.00030037	0.018354	9.7241E-06	-0.54859	-0.00029064	529.7956637712358	60.353	0.71351	60.353	60.006	60.719	0					34	13	3	0	0	0	0.13208	1	21704	21704		66.457	14.188	1	19472000			43591	2465	31942	32197	42521	42521					0.05028824126384279
RLDETIQAI	9	Unmodified	_RLDETIQAI_					0	0	0		ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	MULTI-SECPEP	A375_MHC_IP_R2	2	530.1946411132812	2	529.795663	1057.57677	-0.97324	-0.00051562	-0.14152	-7.4976E-05	-1.1148	-0.00059059	529.795621076058	59.595	0.96239	60.343	59.641	60.603	0.74714					35	18	3	0	0	0	0.20451	1	22500	22500		57.722	13.864	1	16461000			43592	2465	31942	32197	42522	42522					0.05028824126384279
RLDEVPASL	9	Unmodified	_RLDEVPASL_					0	0	0		ENST00000609682.1_1_3:101395365-101395752:+|nuORF	ENST00000609682.1_1_3:101395365-101395752:+|nuORF	ENST00000609682.1_1_3:101395365-101395752:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	499.7054748535156	2	500.277106	998.53966	-0.35369	-0.00017694	0.2625	0.00013132	-0.091182	-4.5616E-05	500.2771789259538	59.849	0.61033	59.849	59.498	60.109	0					24	11	3	0	0	0	0.37663	1	21552	21552		43.772	0	1	7946100			43593	13936	31943	32198	42523	42523					0.04033152580609567
RLDEVPASL	9	Unmodified	_RLDEVPASL_					0	0	0		ENST00000609682.1_1_3:101395365-101395752:+|nuORF	ENST00000609682.1_1_3:101395365-101395752:+|nuORF	ENST00000609682.1_1_3:101395365-101395752:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	500.2210693359375	2	500.277106	998.53966	-0.96262	-0.00048158	-0.10697	-5.3517E-05	-1.0696	-0.00053509	500.27705373082927	59.065	0.60892	59.812	59.438	60.047	0.74714					24	11	3	0	0	0	0.16945	1	22392	22392		40.239	5.8375	1	7536700			43594	13936	31943	32198	42524	42524					0.04033152580609567
RLDFLLRLD	9	Unmodified	_RLDFLLRLD_					0	0	0			REV__ENST00000481697.5_1_7:102389464-102389629:+|nuORF	REV__ENST00000481697.5_1_7:102389464-102389629:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	387.2971496582031	3	387.564391	1159.67134	-0.099872	-3.8707E-05	0.15829	6.1349E-05	0.058423	2.2643E-05	387.56452065147494	26.578	0.80615	26.578	26.221	27.027	0					45	14	4	0	0	0	0.54799	1	7867	7867		17.443	0.87677	1	55667000	+		43595	25265	31944	32199	42525	42525					0.09789382668373037
RLDGRGLLY	9	Unmodified	_RLDGRGLLY_					0	0	0		ENST00000476224.1_1_9:66553335-66553437:+|nuORF;ENST00000435586.1_1_9:44401867-44401966:+|nuORF	ENST00000476224.1_1_9:66553335-66553437:+|nuORF	ENST00000476224.1_1_9:66553335-66553437:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	532.2059326171875	2	531.806365	1061.59818	-0.52701	-0.00028027	0.24746	0.0001316	-0.27955	-0.00014867	531.8063392443546	51.213	0.91392	51.213	50.864	51.778	0					48	17	6	0	0	0	0.55534	1	18166	18166		27.629	14.121	1	7273200			43596	11912	31945	32200	42526	42526					0.06984253945779528
RLDGRGLLY	9	Unmodified	_RLDGRGLLY_					0	0	0		ENST00000476224.1_1_9:66553335-66553437:+|nuORF;ENST00000435586.1_1_9:44401867-44401966:+|nuORF	ENST00000476224.1_1_9:66553335-66553437:+|nuORF	ENST00000476224.1_1_9:66553335-66553437:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	355.2734069824219	3	354.873336	1061.59818	-0.39727	-0.00014098	0.086971	3.0864E-05	-0.3103	-0.00011012	354.87339654283477	50.282	0.65881	51.036	50.753	51.412	0.75406					25	12	3	0	0	0	0.7713	1	18925	18925		12.175	5.969	1	5549700			43597	11912	31945	32200	42527	42527					0.06984253945779528
RLDGRGLLY	9	Unmodified	_RLDGRGLLY_					0	0	0		ENST00000476224.1_1_9:66553335-66553437:+|nuORF;ENST00000435586.1_1_9:44401867-44401966:+|nuORF	ENST00000476224.1_1_9:66553335-66553437:+|nuORF	ENST00000476224.1_1_9:66553335-66553437:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	532.2061157226562	2	531.806365	1061.59818	-0.84636	-0.0004501	1.3571	0.00072171	0.51074	0.00027161	531.8071445113155	50.293	0.81059	51.047	50.702	51.513	0.75406					31	15	3	0	0	0	0.41731	1	18913	18913		31.268	11.829	1	7300700			43598	11912	31945	32200	42528	42528					0.06984253945779528
RLDHKFDLMY	10	Unmodified	_RLDHKFDLMY_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENST00000530835.1_1_11:90016856-90017168:+|nuORF;TUBAL3|p.A407V|1|0.23|ENSG00000178462|chr10:5393638-5393638|G/A|missense_variant;ENSG00000178462|ENST00000380419|TUBAL3;nc|ENSG00000178462|A6NHL2-2|TUBAL3	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	A375_MHC_IP_R1	1	446.9603576660156	3	446.56054	1336.65979	0.019885	8.88E-06	-0.29488	-0.00013168	-0.275	-0.0001228	446.56047834017664	56.061	0.50548	56.061	55.79	56.295	0					20	9	3	0	0	0	0.70334	1	20084	20084		6.6235	2.5068	1	2108400			43599	3846	31946	32201	42529	42529					0.0049281758274446474
RLDHKFDLMY	10	Unmodified	_RLDHKFDLMY_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENST00000530835.1_1_11:90016856-90017168:+|nuORF;TUBAL3|p.A407V|1|0.23|ENSG00000178462|chr10:5393638-5393638|G/A|missense_variant;ENSG00000178462|ENST00000380419|TUBAL3;nc|ENSG00000178462|A6NHL2-2|TUBAL3	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	A375_MHC_IP_R2	2	446.9606018066406	3	446.56054	1336.65979	-0.48511	-0.00021663	0.14637	6.5362E-05	-0.33875	-0.00015127	446.5607002449385	55.095	0.45731	55.846	55.678	56.135	0.75075					19	8	3	0	0	0	0.70334	1	20828	20828		6.6235	3.5512	1	2657300			43600	3846	31946	32201	42530	42530					0.0049281758274446474
RLDHWIHSY	9	Unmodified	_RLDHWIHSY_					0	0	0		ENSG00000161714|ENST00000619929|PLCD3	ENSG00000161714|ENST00000619929|PLCD3	ENSG00000161714|ENST00000619929|PLCD3	MULTI-SECPEP	A375_MHC_IP_R1	1	409.940185546875	3	409.540357	1225.59924	0.10545	4.3185E-05	-0.093785	-3.8409E-05	0.011664	4.7768E-06	409.5403680643752	42.506	0.86015	42.506	42.183	43.043	0					37	16	3	0	0	0	0.010802	1	14726	14726		114.19	90.222	1	8608600			43601	6484	31947	32202	42531	42531					-0.004535316853207405
RLDHWIHSY	9	Unmodified	_RLDHWIHSY_					0	0	0		ENSG00000161714|ENST00000619929|PLCD3	ENSG00000161714|ENST00000619929|PLCD3	ENSG00000161714|ENST00000619929|PLCD3	MULTI-MSMS	A375_MHC_IP_R2	2	409.9402160644531	3	409.540357	1225.59924	-0.10025	-4.1057E-05	-0.29399	-0.0001204	-0.39425	-0.00016146	409.54020743772895	41.517	0.45673	42.292	42.047	42.504	0.77451					27	8	4	0	0	0	0.0037351	1	15428	15428		124.95	91.508	1	7573100			43602	6484	31947	32202	42532	42532					-0.004535316853207405
RLDIGVEHV	9	Unmodified	_RLDIGVEHV_					0	0	0		nc|ENSG00000114626|Q969K4-3|ABTB1;ENSG00000114626|ENST00000232744|ABTB1;ABTB1|p.F297Lfs*6|1|0.2|ENSG00000114626|chr3:127677705-127677706|CC/-|frameshift_variant;nc|ENSG00000114626|Q969K4-2|ABTB1;ABTB1|p.F297Lfs*58|1|0.18|ENSG00000114626|chr3:127677702-127677703|-/CT|frameshift_variant;ENST00000478298.5_1_3:127395387-127395988:+|nuORF;ENST00000464431.1_1_3:127395769-127395988:+|nuORF;ENST00000491633.5_1_3:127394949-127398855:+|nuORF	nc|ENSG00000114626|Q969K4-3|ABTB1	nc|ENSG00000114626|Q969K4-3|ABTB1	MULTI-SECPEP	A375_MHC_IP_R1	1	519.9592895507812	2	519.290548	1036.56654	-0.52876	-0.00027458	-0.39835	-0.00020686	-0.92712	-0.00048144	519.290297254643	46.356	0.40109	46.356	46.094	46.495	0					15	7	3	0	0	0	0.67471	1	16224	16224		22.658	13.275	1	6014500			43603	3231	31948	32203	42533	42533					0.049722611918241455
RLDIGVEHV	9	Unmodified	_RLDIGVEHV_					0	0	0		nc|ENSG00000114626|Q969K4-3|ABTB1;ENSG00000114626|ENST00000232744|ABTB1;ABTB1|p.F297Lfs*6|1|0.2|ENSG00000114626|chr3:127677705-127677706|CC/-|frameshift_variant;nc|ENSG00000114626|Q969K4-2|ABTB1;ABTB1|p.F297Lfs*58|1|0.18|ENSG00000114626|chr3:127677702-127677703|-/CT|frameshift_variant;ENST00000478298.5_1_3:127395387-127395988:+|nuORF;ENST00000464431.1_1_3:127395769-127395988:+|nuORF;ENST00000491633.5_1_3:127394949-127398855:+|nuORF	nc|ENSG00000114626|Q969K4-3|ABTB1	nc|ENSG00000114626|Q969K4-3|ABTB1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.690185546875	2	519.290548	1036.56654	-0.72042	-0.00037411	-0.34452	-0.00017891	-1.0649	-0.00055301	519.2904375906246	45.452	0.40591	46.217	45.947	46.353	0.76518					15	7	3	0	0	0	0.63622	1	16980	16980		24.991	16.835	1	5699100			43604	3231	31948	32203	42534	42534					0.049722611918241455
RLDIIETNV	9	Unmodified	_RLDIIETNV_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	MULTI-SECPEP	A375_MHC_IP_R2	2	537.203369140625	2	536.803488	1071.59242	-0.76961	-0.00041313	0.87849	0.00047158	0.10888	5.8446E-05	536.8039939462192	68.796	0.96372	69.531	68.968	69.932	0.73511					27	18	2	0	0	0	0.46121	1	26083	26083		32.037	11.623	1	2180400			43605	1487	31949	32204	42535	42535					0.059491106434506946
RLDINTNTY	9	Unmodified	_RLDINTNTY_					0	0	0		ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	MULTI-MSMS	A375_MHC_IP_R1	1	555.6830444335938	2	555.28292	1108.55129	0.0088003	4.8867E-06	1.5184	0.00084314	1.5272	0.00084803	555.2832694360028	44.942	0.81136	44.942	44.523	45.334	0					38	12	5	0	0	0	0.18338	1	15703	15703		49.554	11.58	1	6832600			43606	3683	31950	32205	42536	42536					0.0013534960396555107
RLDINTNTY	9	Unmodified	_RLDINTNTY_					0	0	0		ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	MULTI-MSMS	A375_MHC_IP_R2	2	555.6826171875	2	555.28292	1108.55129	-0.66392	-0.00036866	0.49914	0.00027716	-0.16478	-9.1501E-05	555.2833342389538	44.194	0.60768	44.963	44.631	45.239	0.7691					19	11	2	0	0	0	0.20295	1	16471	16471		47.594	9.6204	1	4705200			43607	3683	31950	32205	42537	42537					0.0013534960396555107
RLDIPDRLY	9	Unmodified	_RLDIPDRLY_					0	0	0			REV__nc|ENSG00000122882|O95905-2|ECD	REV__nc|ENSG00000122882|O95905-2|ECD	MULTI-SECPEP	A375_MHC_IP_R1	1	581.2245483398438	2	580.824755	1159.63496	-0.03801	-2.2077E-05	-0.039003	-2.2654E-05	-0.077013	-4.4731E-05	580.8247278941163	51.706	0.50725	51.706	51.475	51.982	0					23	9	4	0	0	0	0.61452	1	18366	18366		26.268	3.5319	1	10300000	+		43608	18220	31951	32206	42538	42538					0.06152505771660799
RLDIPDRLY	9	Unmodified	_RLDIPDRLY_					0	0	0			REV__nc|ENSG00000122882|O95905-2|ECD	REV__nc|ENSG00000122882|O95905-2|ECD	MULTI-SECPEP	A375_MHC_IP_R2	2	388.2768859863281	3	387.552262	1159.63496	-0.23733	-9.1978E-05	0.76937	0.00029817	0.53204	0.00020619	387.5524306458127	51.035	0.30175	51.789	51.564	51.866	0.75406					8	5	2	0	0	0	0.78753	1	19149	19149		5.4027	0	1	913510	+		43609	18220	31951	32206	42539	42539					0.06152505771660799
RLDKITMFY	9	Unmodified	_RLDKITMFY_					0	0	0			REV__ENST00000534728.1_1_11:124983810-124984254:+|nuORF	REV__ENST00000534728.1_1_11:124983810-124984254:+|nuORF	MSMS	A375_MHC_IP_R2	2	396.2801513671875	3	396.214482	1185.62162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.147	1	28.825	28.325	29.325	0.67857								0	0	0	0.15486	1	9691	9691		8.4443	3.1474	1		+		43610	25893	31952	32207	42540	42540					0.03622931668064666
RLDKSAHLFY	10	Unmodified	_RLDKSAHLFY_					0	0	0		ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	417.6275939941406	3	417.227779	1248.66151	0.34806	0.00014522	-0.14778	-6.1658E-05	0.20028	8.3563E-05	417.2277005226552	40.602	0.50782	40.602	40.355	40.863	0					20	9	3	0	0	0	0.24209	1	13951	13951		44.945	26.572	1	10550000			43611	192	31953	32208	42541	42541					0.047121946629886224
RLDKSAHLFY	10	Unmodified	_RLDKSAHLFY_					0	0	0		ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	417.6275634765625	3	417.227779	1248.66151	-0.080233	-3.3476E-05	0.0022543	9.4056E-07	-0.077979	-3.2535E-05	417.2277744410055	39.68	0.71052	40.455	40.118	40.828	0.77451					33	13	4	0	0	0	0.27023	1	14642	14642		42.068	23.695	1	9654300			43612	192	31953	32208	42542	42542					0.047121946629886224
RLDNGQVGLY	10	Unmodified	_RLDNGQVGLY_					0	0	0		nc|ENSG00000100266|Q9UNF0-2|PACSIN2;ENSG00000100266|ENST00000263246|PACSIN2	nc|ENSG00000100266|Q9UNF0-2|PACSIN2	nc|ENSG00000100266|Q9UNF0-2|PACSIN2	MULTI-SECPEP	A375_MHC_IP_R1	1	568.1984252929688	2	567.798737	1133.58292	-0.21992	-0.00012487	-0.017215	-9.7747E-06	-0.23713	-0.00013464	567.7987848166407	51.935	0.3574	51.935	51.728	52.085	0					12	6	2	0	0	0	0.68818	1	18459	18459		51.415	51.415	1	2998600			43613	2148	31954	32209	42543	42543					0.02147342357920934
RLDNGQVGLY	10	Unmodified	_RLDNGQVGLY_					0	0	0		nc|ENSG00000100266|Q9UNF0-2|PACSIN2;ENSG00000100266|ENST00000263246|PACSIN2	nc|ENSG00000100266|Q9UNF0-2|PACSIN2	nc|ENSG00000100266|Q9UNF0-2|PACSIN2	MULTI-SECPEP	A375_MHC_IP_R2	2	568.197998046875	2	567.798737	1133.58292	-0.50408	-0.00028621	-0.34703	-0.00019704	-0.85111	-0.00048326	567.7984727086738	51.188	0.45534	51.94	51.663	52.118	0.75225					17	8	3	0	0	0	0.72578	1	19278	19278		47.594	47.594	1	3047400			43614	2148	31954	32209	42544	42544					0.02147342357920934
RLDPNVQKW	9	Unmodified	_RLDPNVQKW_					0	0	0		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MULTI-MSMS	A375_MHC_IP_R1	1	578.7167358398438	2	578.317097	1154.61964	0.21337	0.00012339	-0.37047	-0.00021425	-0.1571	-9.0854E-05	578.3168124603554	38.857	0.55903	38.857	38.628	39.187	0					29	10	4	0	0	0	0.018959	1	13202	13202		100.71	58.614	1	41029000			43615	4570	31955	32210	42545	42545					0.04851638974469097
RLDPNVQKW	9	Unmodified	_RLDPNVQKW_					0	0	0		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MULTI-MSMS	A375_MHC_IP_R1	1	385.60980224609375	3	385.88049	1154.61964	0.64851	0.00025025	-1.0098	-0.00038967	-0.36131	-0.00013942	385.88023691308797	38.855	0.7649	38.855	38.371	39.136	0					26	14	4	0	0	0	0.33243	1	13262	13262		28.234	14.715	1	10571000			43616	4570	31955	32210	42546	42546					0.04851638974469097
RLDPNVQKW	9	Unmodified	_RLDPNVQKW_					0	0	0		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MULTI-MSMS	A375_MHC_IP_R2	2	578.7171630859375	2	578.317097	1154.61964	-0.4579	-0.00026481	-0.088656	-5.1271E-05	-0.54656	-0.00031608	578.3170057522643	38.043	0.6153	38.817	38.534	39.149	0.77451					32	11	4	0	0	0	0.035228	1	13940	13940		84.522	48.016	1	31057000			43617	4570	31955	32210	42547	42547					0.04851638974469097
RLDPNVQKW	9	Unmodified	_RLDPNVQKW_					0	0	0		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MULTI-MSMS	A375_MHC_IP_R2	2	385.60980224609375	3	385.88049	1154.61964	-0.37184	-0.00014348	0.23654	9.1275E-05	-0.1353	-5.2209E-05	385.8805164865601	38.036	0.4624	38.81	38.585	39.047	0.77451					23	8	4	0	0	0	0.16286	2	13983	13956;13983		40.725	27.11	1	8547500			43618	4570	31955	32210	42548;42549	42549					0.04851638974469097
RLDPSAVFPL	10	Unmodified	_RLDPSAVFPL_					0	0	0		ENST00000300853.7_1_19:45926543-45927212:-|nuORF	ENST00000300853.7_1_19:45926543-45927212:-|nuORF	ENST00000300853.7_1_19:45926543-45927212:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	557.6763916015625	2	557.816399	1113.61824	-0.79474	-0.00044332	0.14829	8.2717E-05	-0.64645	-0.0003606	557.8163744765247	106.67	0.71201	107.43	107.04	107.75	0.75977					29	13	3	0	0	0	0.70528	1	40298	40298		32.786	8.7651	1	4404300			43619	10539	31956	32211	42550	42550					0.06598004885699993
RLDQRVPQI	9	Unmodified	_RLDQRVPQI_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.G1736S|1|0.36|ENSG00000163359|chr2:237366981-237366981|C/T|missense_variant	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-SECPEP	A375_MHC_IP_R1	1	376.3119812011719	3	375.556007	1123.64619	0.44266	0.00016624	-0.0040037	-1.5036E-06	0.43865	0.00016474	375.5559298065663	40.484	0.45794	40.484	40.254	40.712	0					13	8	2	0	0	0	0.78353	1	13921	13921		9.544	2.5069	1	1022200			43620	6654	31957	32212	42551	42551					0.08931327865821004
RLDSLTTLY	9	Unmodified	_RLDSLTTLY_					0	0	0		nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	MULTI-MSMS	A375_MHC_IP_R1	1	541.6976318359375	2	541.298039	1080.58152	-0.60175	-0.00032572	-1.0601	-0.00057381	-1.6618	-0.00089953	541.2968261048588	77.593	0.55867	77.593	77.336	77.895	0					23	10	3	0	0	0	0.19747	1	28290	28290		38.176	2.0485	1	4302000			43621	2782	31958	32213	42552	42552					0.04445708269145143
RLDSLTTLY	9	Unmodified	_RLDSLTTLY_					0	0	0		nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	MULTI-MSMS	A375_MHC_IP_R2	2	541.6978149414062	2	541.298039	1080.58152	-0.8344	-0.00045166	-0.0074655	-4.0411E-06	-0.84186	-0.0004557	541.2980301824588	76.786	0.45531	77.527	77.25	77.705	0.74052					18	7	3	0	0	0	0.17338	1	29140	29140		39.95	1.7741	1	4734300			43622	2782	31958	32213	42553	42553					0.04445708269145143
RLDSLTTLY	9	Unmodified	_RLDSLTTLY_					0	0	0		nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	541.298039	1080.58152	-0.8344	-0.00045166	-0.0074655	-4.0411E-06	-0.84186	-0.0004557	541.2980301824588	76.786	0.45531	77.527	77.25	77.705	0.74052	-0.033077	9.9413E-05	NaN	39.95	18	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4734300			43623	2782	31958	32213							0.04445708269145143
RLDSRSFFW	9	Unmodified	_RLDSRSFFW_					0	0	0		nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN;ENST00000459963.5_1_1:160321502-160323118:+|nuORF;NCSTN|p.T280I|1|0.08|ENSG00000162736|chr1:160351801-160351801|C/T|missense_variant	nc|ENSG00000162736|Q92542-2|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	MULTI-MSMS	A375_MHC_IP_R1	1	405.6089782714844	3	405.208607	1212.60399	-0.25342	-0.00010269	0.64972	0.00026327	0.39629	0.00016058	405.2088630413998	82.547	0.55849	82.547	82.265	82.823	0					16	10	2	0	0	0	0.59859	1	30195	30195		14.957	5.4132	1	1873300			43624	6585	31959	32214	42554	42554					0.006193524574200637
RLDSRSFFW	9	Unmodified	_RLDSRSFFW_					0	0	0		nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN;ENST00000459963.5_1_1:160321502-160323118:+|nuORF;NCSTN|p.T280I|1|0.08|ENSG00000162736|chr1:160351801-160351801|C/T|missense_variant	nc|ENSG00000162736|Q92542-2|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	MULTI-MATCH	A375_MHC_IP_R2	2		3	405.208607	1212.60399	-0.059666	-2.4177E-05	-0.17711	-7.1766E-05	-0.23677	-9.5943E-05	405.208519869245	81.705	0.55588	82.448	82.078	82.634	0.74293	-0.049601	-0.00037718	NaN	14.957	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1309500			43625	6585	31959	32214							0.006193524574200637
RLDTDHLRY	9	Unmodified	_RLDTDHLRY_					0	0	0		nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF	nc|ENSG00000186635|Q96P48-3|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	MULTI-MSMS	A375_MHC_IP_R1	1	397.2755126953125	3	396.875516	1187.60472	-0.28084	-0.00011146	0.11373	4.5137E-05	-0.16711	-6.632E-05	396.87558706800723	27.811	0.45319	27.811	27.584	28.037	0					19	8	3	0	0	0	0.053894	2	8512	8438;8512		62.78	47.242	1	7381100			43626	8766	31960	32215	42555;42556	42556					0.018421471064584694
RLDTDHLRY	9	Unmodified	_RLDTDHLRY_					0	0	0		nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF	nc|ENSG00000186635|Q96P48-3|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	MULTI-MSMS	A375_MHC_IP_R2	2	397.2755126953125	3	396.875516	1187.60472	-0.16254	-6.4509E-05	-0.082883	-3.2894E-05	-0.24542	-9.7403E-05	396.8755520616929	27.139	0.35849	27.818	27.587	27.945	0.67857					15	6	3	0	0	0	0.0095972	1	9242	9242		109.15	61.552	1	9128400			43627	8766	31960	32215	42557	42557					0.018421471064584694
RLDTGPQSL	9	Unmodified	_RLDTGPQSL_					0	0	0		ENSG00000125651|ENST00000394456|GTF2F1;ENST00000594213.5_1_19:6380485-6381059:-|nuORF	ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	MULTI-SECPEP	A375_MHC_IP_R1	1	494.16650390625	2	493.766906	985.519259	-0.62006	-0.00030617	-0.26657	-0.00013162	-0.88663	-0.00043779	493.7668852990083	36.785	0.55688	36.785	36.439	36.996	0					17	10	3	0	0	0	0.33896	1	12355	12355		47.594	23.574	1	2245000			43628	3976	31961	32216	42558	42558					0.025919819208070294
RLDTGPQSL	9	Unmodified	_RLDTGPQSL_					0	0	0		ENSG00000125651|ENST00000394456|GTF2F1;ENST00000594213.5_1_19:6380485-6381059:-|nuORF	ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1665954589844	2	493.766906	985.519259	-0.64385	-0.00031791	0.28127	0.00013888	-0.36258	-0.00017903	493.7670042011093	35.952	0.4074	36.716	36.486	36.894	0.76338					14	7	2	0	0	0	0.36673	1	13076	13076		38.615	2.1085	1	4994300			43629	3976	31961	32216	42559	42559					0.025919819208070294
RLDTPLYFSY	10	Unmodified	_RLDTPLYFSY_					0	0	0		nc|ENSG00000117385|Q32P28-4|P3H1;ENSG00000117385|ENST00000296388|P3H1;nc|ENSG00000117385|Q32P28-3|P3H1;ENST00000460031.5_1_1:43212370-43220777:-|nuORF;ENST00000481465.3_1_1:43215737-43220567:-|nuORF	nc|ENSG00000117385|Q32P28-4|P3H1	nc|ENSG00000117385|Q32P28-4|P3H1	MULTI-SECPEP	A375_MHC_IP_R1	1	638.2242431640625	2	637.824421	1273.63429	-0.70012	-0.00044656	-0.09098	-5.8029E-05	-0.7911	-0.00050458	637.8243592720293	99.212	0.4567	99.212	98.914	99.371	0					14	8	2	0	0	0	0.4546	1	36463	36463		51.415	21.575	1	1952500			43630	3477	31962	32217	42560	42560					0.008416663319621875
RLEDDPPVSL	10	Unmodified	_RLEDDPPVSL_					0	0	0		nc|ENSG00000055732|Q8TDD5-2|MCOLN3;ENSG00000055732|ENST00000370589|MCOLN3	nc|ENSG00000055732|Q8TDD5-2|MCOLN3	nc|ENSG00000055732|Q8TDD5-2|MCOLN3	MULTI-SECPEP	A375_MHC_IP_R2	2	381.5875244140625	3	380.868027	1139.58225	-0.33309	-0.00012686	1.7585	0.00066975	1.4254	0.00054288	381.2028680340706	20.092	0.45773	20.702	20.449	20.907	0.61029					12	8	2	0	0	0	0.87163	1	6233	6233		5.4027	2.3304	1	771260			43631	1272	31963	32218	42561	42561					0.018045029182076178
RLEDFRVDP	9	Unmodified	_RLEDFRVDP_					0	0	0		nc|ENSG00000138709|Q659C4-6|LARP1B;ENST00000503725.1_1_4:129100626-129141527:+|nuORF;nc|ENSG00000138709|Q659C4-2|LARP1B;ENSG00000138709|ENST00000326639|LARP1B;ENST00000508648.5_1_4:129121771-129141527:+|nuORF;nc|ENSG00000138709|Q659C4-8|LARP1B;ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1	nc|ENSG00000138709|Q659C4-6|LARP1B;ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	MULTI-MSMS	A375_MHC_IP_R1	1	382.6279602050781	3	382.86825	1145.58292	0.0048194	1.8452E-06	-0.67012	-0.00025657	-0.6653	-0.00025472	382.8678761181018	23.516	0.25457	23.516	23.381	23.635	0					6	4	2	0	0	0	0.68382	1	6440	6440		8.4443	0.83535	1	2816400			43632	6144;5025	31964	32219	42562	42562					0.01595342357904883
RLEDPDGKVLY	11	Unmodified	_RLEDPDGKVLY_					0	0	0		ENST00000503010.1_1_5:114951908-114961566:-|nuORF;ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2;nc|ENSG00000134970|Q9Y3B3-2|TMED7	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	653.2457885742188	2	652.845884	1303.67722	-0.22967	-0.00014994	-0.091889	-5.9989E-05	-0.32156	-0.00020993	652.8457287047559	42.605	0.50545	42.605	42.386	42.891	0					22	9	3	0	0	0	0.1495	1	14757	14757		80.896	44.389	1	11644000			43633	4631	31965	32220	42563	42563					0.03752436389390823
RLEDPDGKVLY	11	Unmodified	_RLEDPDGKVLY_					0	0	0		ENST00000503010.1_1_5:114951908-114961566:-|nuORF;ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2;nc|ENSG00000134970|Q9Y3B3-2|TMED7	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	435.9662780761719	3	435.566348	1303.67722	0.0069092	3.0094E-06	-0.18716	-8.1522E-05	-0.18025	-7.8512E-05	435.56623172135875	42.607	0.55613	42.607	42.386	42.942	0					24	10	3	0	0	0	0.0010212	2	14763	14763;14846		103.89	76.761	1	9232600			43634	4631	31965	32220	42564;42565	42564					0.03752436389390823
RLEDPDGKVLY	11	Unmodified	_RLEDPDGKVLY_					0	0	0		ENST00000503010.1_1_5:114951908-114961566:-|nuORF;ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2;nc|ENSG00000134970|Q9Y3B3-2|TMED7	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	435.9660339355469	3	435.566348	1303.67722	-0.26602	-0.00011587	-0.19406	-8.4524E-05	-0.46007	-0.00020039	435.5662301137091	41.858	0.51127	42.633	42.401	42.913	0.77451					22	9	4	0	0	0	0.020021	1	15536	15536		87.442	63.478	1	13703000			43635	4631	31965	32220	42566	42566					0.03752436389390823
RLEDPDGKVLY	11	Unmodified	_RLEDPDGKVLY_					0	0	0		ENST00000503010.1_1_5:114951908-114961566:-|nuORF;ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2;nc|ENSG00000134970|Q9Y3B3-2|TMED7	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	653.2451171875	2	652.845884	1303.67722	-0.78879	-0.00051496	0.19642	0.00012823	-0.59236	-0.00038672	652.845932949698	41.853	0.46063	42.627	42.35	42.811	0.77451					21	8	4	0	0	0	0.15163	1	15540	15540		81.915	45.409	1	13777000			43636	4631	31965	32220	42567	42567					0.03752436389390823
RLEDQVIGV	9	Unmodified	_RLEDQVIGV_					0	0	0		nc|ENSG00000060749|Q2KHR3-2|QSER1;nc|ENSG00000060749|Q2KHR3|QSER1;ENSG00000060749|ENST00000650167|QSER1	nc|ENSG00000060749|Q2KHR3-2|QSER1	nc|ENSG00000060749|Q2KHR3-2|QSER1	MULTI-SECPEP	A375_MHC_IP_R1	1	515.190185546875	2	514.790381	1027.56621	-0.59129	-0.00030439	0.05181	2.6671E-05	-0.53948	-0.00027772	514.7904725460089	58.804	0.96716	58.804	58.278	59.245	0					51	18	4	0	0	0	0.16764	1	21080	21080		60.074	3.8969	1	17598000			43637	1315	31966	32221	42568	42568					0.053528414719721695
RLEEERFK	8	Unmodified	_RLEEERFK_					0	0	0			REV__ENSG00000159450|ENST00000614923|TCHH	REV__ENSG00000159450|ENST00000614923|TCHH	MULTI-SECPEP	A375_MHC_IP_R2	2	369.9366760253906	3	369.536612	1105.58801	0.38815	0.00014344	0.39317	0.00014529	0.78132	0.00028873	369.53647982362224	48.056	0.70364	48.817	48.532	49.235	0.76128					23	13	3	0	0	0	0.93661	1	18037	18037		12.241	0	1	5834700	+		43638	20121	31967	32222	42569	42569					0.03943646220523078
RLEELIVAL	9	Unmodified	_RLEELIVAL_					0	0	0			REV__ENSG00000057704|ENST00000261226|TMCC3	REV__ENSG00000057704|ENST00000261226|TMCC3	MULTI-MSMS	A375_MHC_IP_R1	1	528.5234985351562	2	528.326599	1054.63865	-0.73503	-0.00038834	-0.062912	-3.3238E-05	-0.79794	-0.00042157	528.326498590201	86.099	0.80923	86.099	85.87	86.679	0					34	15	3	0	0	0	0.67152	1	31483	31483		13.906	9.5768	1	6419300	+		43639	16428	31968	32223	42570	42570					0.11351175545541992
RLEIEPEWAY	10	Unmodified	_RLEIEPEWAY_					0	0	0		ENSG00000100442|ENST00000396062|FKBP3	ENSG00000100442|ENST00000396062|FKBP3	ENSG00000100442|ENST00000396062|FKBP3	MULTI-SECPEP	A375_MHC_IP_R2	2	653.7269287109375	2	653.327328	1304.6401	-0.73405	-0.00047957	0.088837	5.804E-05	-0.64521	-0.00042153	653.8287934445066	92.398	0.91239	93.137	92.734	93.646	0.73902					49	17	5	0	0	0	0.62699	1	35133	35133		57.249	43.343	1	19868000			43640	2180	31969	32224	42571	42571					-3.235156373193604E-05
RLEKERAMAE	10	Unmodified	_RLEKERAMAE_					0	0	0		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	A375_MHC_IP_R1	1	411.9521179199219	3	411.552045	1231.63431	0.060882	2.5056E-05	0.65654	0.0002702	0.71742	0.00029526	411.55223914764946	64.664	0.60961	64.664	64.242	64.851	0					20	11	2	0	0	0	0.70496	1	23392	23392		5.7834	0.73591	1	2338700			43641	3563	31970	32225	42572	42572					0.027753430603070228
RLEKLDTRVIQ	11	Unmodified	_RLEKLDTRVIQ_					0	0	0			REV__ENSG00000136731|ENST00000259253|UGGT1	REV__ENSG00000136731|ENST00000259253|UGGT1	MULTI-MSMS	A375_MHC_IP_R1	1	686.307861328125	2	685.90935	1369.80415	-0.979	-0.00067151	-0.13391	-9.1853E-05	-1.1129	-0.00076336	685.9089633240333	148.81	1.4995	148.81	147.96	149.46	0					50	30	3	0	0	0	0.73924	1	56815	56815		0	0	1	255850	+		43642	18955	31971	32226	42573	42573					0.13403782334330572
RLEKLDTRVIQ	11	Unmodified	_RLEKLDTRVIQ_					0	0	0			REV__ENSG00000136731|ENST00000259253|UGGT1	REV__ENSG00000136731|ENST00000259253|UGGT1	MULTI-MATCH	A375_MHC_IP_R2	2		2	685.90935	1369.80415	-0.46978	-0.00032222	-0.377	-0.00025859	-0.84677	-0.00058081	685.9085542464707	148.91	1.2491	148.93	148.21	149.46	0.018707	0.058023	-0.0002126	NaN	0	47	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149420	+		43643	18955	31971	32226							0.13403782334330572
RLEKLQQQP	9	Unmodified	_RLEKLQQQP_					0	0	0		ENSG00000155754|ENST00000439140|C2CD6;nc|ENSG00000155754|Q53TS8-2|C2CD6;nc|ENSG00000155754|Q53TS8-3|C2CD6;nc|ENSG00000155754|Q53TS8-1|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	MULTI-MSMS	A375_MHC_IP_R2	2	570.7604370117188	2	570.330205	1138.64586	-0.11839	-6.752E-05	-0.43994	-0.00025091	-0.55832	-0.00031843	570.3297118951914	149.65	0.95453	149.67	149.06	150.01	0.01825					85	46	3	0	0	0	0.75978	1	57926	57926		1.6526	0	1	125550			43644	6153	31972	32227	42574	42574					0.08207908145936926
RLELLVLLLLL	11	Unmodified	_RLELLVLLLLL_					0	0	0			REV__CTSE|p.G15R|1|0.2|ENSG00000196188|chr1:206023749-206023749|C/T|missense_variant	REV__CTSE|p.G15R|1|0.2|ENSG00000196188|chr1:206023749-206023749|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	654.85498046875	2	654.454874	1306.89519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.15	1	122.52	122.02	123.02	0.3766								0	0	0	0.1636	1	46777	46777		0	0	1		+		43645	15934	31973	32228	42575	42575					0.2540227804981896
RLEPHKPQQ	9	Unmodified	_RLEPHKPQQ_					0	0	0		ENSG00000117751|ENST00000311772|PPP1R8	ENSG00000117751|ENST00000311772|PPP1R8	ENSG00000117751|ENST00000311772|PPP1R8	MULTI-SECPEP	A375_MHC_IP_R1	1	378.6123962402344	3	378.21224	1131.61489	0.37502	0.00014184	0.98711	0.00037334	1.3621	0.00051518	378.21264179240393	50.901	1.0675	50.901	50.305	51.373	0					28	20	2	0	0	0	0.67483	1	18050	18050		14.405	0	1	4048400			43646	3511	31974	32229	42576	42576					0.054347548316854954
RLEPQGLLY	9	Unmodified	_RLEPQGLLY_					0	0	0		nc|ENSG00000105137|Q6ZW31-2|SYDE1;ENSG00000105137|ENST00000342784|SYDE1	nc|ENSG00000105137|Q6ZW31-2|SYDE1	nc|ENSG00000105137|Q6ZW31-2|SYDE1	MULTI-SECPEP	A375_MHC_IP_R1	1	544.6883544921875	2	544.808574	1087.60259	-0.36606	-0.00019943	0.15779	8.5963E-05	-0.20827	-0.00011347	544.8085988561994	72.181	0.80969	72.181	71.815	72.625	0					41	15	3	0	0	0	0.65623	1	26265	26265		18.373	18.373	1	8135500			43647	2568	31975	32230	42577	42577					0.062297183686723656
RLEQLKLSL	9	Unmodified	_RLEQLKLSL_					0	0	0			REV__ENST00000482476.1_1_X:48919453-48920147:+|nuORF	REV__ENST00000482476.1_1_X:48919453-48920147:+|nuORF	MSMS	A375_MHC_IP_R2	2	367.2818298339844	3	367.232641	1098.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.505	1	51.259	50.759	51.759	0.75406								0	0	0	0.15486	1	18994	18994		10.151	1.4052	1		+		43648	19573	31976	32231	42578	42578					0.1307026681113257
RLERFPRRRRH	11	Unmodified	_RLERFPRRRRH_					0	0	0		ENST00000589863.5_1_19:5623107-5623161:+|nuORF	ENST00000589863.5_1_19:5623107-5623161:+|nuORF	ENST00000589863.5_1_19:5623107-5623161:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	527.0458984375	3	526.981936	1577.92398	-0.8524	-0.0004492	-0.88594	-0.00046687	-1.7383	-0.00091607	527.3164639268771	143.07	1.1448	143.07	142.79	143.94	0					45	22	4	0	0	0	0.73924	2	54876	54876;54894		0.094841	0	1	6615900			43649	13776	31977	32232	42579;42580	42579					0.1581325324214049
RLERQQDESA	10	Unmodified	_RLERQQDESA_					0	0	0		nc|ENSG00000101746|O94818-4|NOL4;ENST00000586314.5_1_18:31432808-31708839:-|nuORF;nc|ENSG00000101746|O94818-3|NOL4;ENSG00000101746|ENST00000261592|NOL4	nc|ENSG00000101746|O94818-4|NOL4	nc|ENSG00000101746|O94818-4|NOL4	MULTI-MSMS	A375_MHC_IP_R1	1	411.10345458984375	3	411.205702	1230.59528	0.13411	5.5149E-05	-0.73783	-0.0003034	-0.60372	-0.00024825	411.2055104106794	50.891	2.4394	50.891	49.947	52.387	0					140	47	5	0	0	0	0.70496	1	18139	18139		5.7834	0	1	99992000			43650	2320	31978	32233	42581	42581					-0.010796659697007271
RLEVQSERCL	10	Unmodified	_RLEVQSERCL_					0	0	0			REV__ENST00000478558.1_1_1:153631578-153631665:+|nuORF	REV__ENST00000478558.1_1_1:153631578-153631665:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	411.62200927734375	3	411.552045	1231.63431	-0.18616	-7.6616E-05	-2.4631	-0.0010137	-2.6493	-0.0010903	411.5514264354515	50.155	0.2537	50.909	50.804	51.057	0.75406					7	4	2	0	0	0	0.57505	2	18825	18825;18849		14.957	0	1	520410	+		43651	25217	31979	32234	42582;42583	42582					0.027753430603070228
RLEWWKLDRYQ	11	Unmodified	_RLEWWKLDRYQ_					0	0	0			REV__nc|ENSG00000138798|P01133-2|EGF	REV__nc|ENSG00000138798|P01133-2|EGF	MSMS	A375_MHC_IP_R1	1	796.9549560546875	2	796.920249	1591.82595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.51	1	126.51	126.01	127.01	0								0	0	0	0.16316	1	48317	48317		2.2828	0.95324	1		+		43652	19124	31980	32235	42584	42584					0.05370587082916245
RLFADILNDV	10	Unmodified	_RLFADILNDV_					0	0	0		ENSG00000140688|ENST00000327237|RUSF1	ENSG00000140688|ENST00000327237|RUSF1	ENSG00000140688|ENST00000327237|RUSF1	MULTI-MSMS	A375_MHC_IP_R1	1	589.2258911132812	2	588.324588	1174.63462	-0.16776	-9.8697E-05	1.0694	0.00062913	0.9016	0.00053044	588.325250112181	117.95	0.40585	117.95	117.76	118.17	0					21	7	3	0	0	0	0.14143	1	43355	43355		55.235	24.598	1	12540000			43653	5177	31981	32236	42585	42585					0.05429086051799459
RLFADILNDV	10	Unmodified	_RLFADILNDV_					0	0	0		ENSG00000140688|ENST00000327237|RUSF1	ENSG00000140688|ENST00000327237|RUSF1	ENSG00000140688|ENST00000327237|RUSF1	MSMS	A375_MHC_IP_R2	2	588.3780517578125	2	588.324588	1174.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.82	1	117.48	116.98	117.98	0.65962								0	0	0	0.0032054	1	44176	44176		87.258	37.325	1				43654	5177	31981	32236	42586	42586					0.05429086051799459
RLFDEPQLASL	11	Unmodified	_RLFDEPQLASL_					0	0	0		nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2;ENST00000587225.1_1_19:1989877-1990887:-|nuORF;ENST00000589685.2_1_19:1986489-1990887:-|nuORF	nc|ENSG00000064726|Q9H0C5-2|BTBD1	nc|ENSG00000064726|Q9H0C5-2|BTBD1	MULTI-MSMS	A375_MHC_IP_R1	1	645.24853515625	2	644.848427	1287.6823	-0.43332	-0.00027942	-0.054762	-3.5313E-05	-0.48808	-0.00031474	644.8481289657327	100	0.95889	100	99.574	100.53	0					36	18	3	0	0	0	0.0012117	1	36731	36731		101.54	55.804	1	6070300			43655	1358	31982	32237	42587	42587					0.04996740251999654
RLFDEPQLASL	11	Unmodified	_RLFDEPQLASL_					0	0	0		nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2;ENST00000587225.1_1_19:1989877-1990887:-|nuORF;ENST00000589685.2_1_19:1986489-1990887:-|nuORF	nc|ENSG00000064726|Q9H0C5-2|BTBD1	nc|ENSG00000064726|Q9H0C5-2|BTBD1	MULTI-SECPEP	A375_MHC_IP_R2	2	645.2483520507812	2	644.848427	1287.6823	-0.52509	-0.0003386	0.0044539	2.8721E-06	-0.52064	-0.00033573	644.8482433007955	99.179	0.66132	99.939	99.556	100.22	0.75977					29	12	3	0	0	0	0.18325	1	37585	37585		83.278	29.874	1	5253500			43656	1358	31982	32237	42588	42588					0.04996740251999654
RLFDQAFGL	9	Unmodified	_RLFDQAFGL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-SECPEP	A375_MHC_IP_R1	1	534.1871337890625	2	533.787641	1065.56073	-0.52072	-0.00027795	0.19284	0.00010294	-0.32787	-0.00017502	533.7876253522184	105.88	0.8176	105.88	105.65	106.47	0					31	15	3	0	0	0	0.4465	1	38856	38856		38.176	13.185	1	6950500			43657	2672	31983	32238	42589	42589					0.030571626801247476
RLFDTQSKEKL	11	Unmodified	_RLFDTQSKEKL_					0	0	0		ENST00000480412.2_1_X:48933021-48933502:-|nuORF;ENSG00000196998|ENST00000376372|WDR45;nc|ENSG00000196998|Q9Y484-3|WDR45;nc|ENSG00000196998|Q9Y484-2|WDR45	ENST00000480412.2_1_X:48933021-48933502:-|nuORF	ENST00000480412.2_1_X:48933021-48933502:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	455.9889831542969	3	455.589265	1363.74596	-0.4256	-0.0001939	0.27102	0.00012347	-0.15457	-7.0422E-05	455.5893578888298	32.399	0.55694	32.399	32.127	32.684	0					25	10	4	0	0	0	1.1708E-05	1	10451	10451		148.92	109	1	15445000			43658	9100	31984	32239	42590	42590					0.07864100689084808
RLFDTQSKEKL	11	Unmodified	_RLFDTQSKEKL_					0	0	0		ENST00000480412.2_1_X:48933021-48933502:-|nuORF;ENSG00000196998|ENST00000376372|WDR45;nc|ENSG00000196998|Q9Y484-3|WDR45;nc|ENSG00000196998|Q9Y484-2|WDR45	ENST00000480412.2_1_X:48933021-48933502:-|nuORF	ENST00000480412.2_1_X:48933021-48933502:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	456.3233947753906	3	455.589265	1363.74596	-0.24232	-0.0001104	-0.1274	-5.804E-05	-0.36972	-0.00016844	455.58915399617155	31.508	0.51111	32.227	31.923	32.434	0.71857					27	9	4	0	0	0	6.044E-08	1	11121	11121		154.88	111.4	1	11365000			43659	9100	31984	32239	42591	42591					0.07864100689084808
RLFEDMGLFEA	11	Oxidation (M)	_RLFEDM(Oxidation (M))GLFEA_		RLFEDM(1)GLFEA		RLFEDM(55)GLFEA	0	0	1		ENST00000544307.1_1_12:20725060-20833202:+|nuORF;ENSG00000172572|ENST00000359062|PDE3A	ENST00000544307.1_1_12:20725060-20833202:+|nuORF	ENST00000544307.1_1_12:20725060-20833202:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	672.718017578125	2	672.318645	1342.62274	-0.53209	-0.00035773	0.35617	0.00023946	-0.17591	-0.00011827	672.3189221431692	96.993	0.91026	96.993	96.58	97.49	0					40	17	4	0	0	0	0.18973	1	35597	35597		55.249	30.367	1	11628000			43660	7723	31985	32240	42592	42592		387			-0.03486898753726564
RLFEDMGLFEA	11	Oxidation (M)	_RLFEDM(Oxidation (M))GLFEA_		RLFEDM(1)GLFEA		RLFEDM(50)GLFEA	0	0	1		ENST00000544307.1_1_12:20725060-20833202:+|nuORF;ENSG00000172572|ENST00000359062|PDE3A	ENST00000544307.1_1_12:20725060-20833202:+|nuORF	ENST00000544307.1_1_12:20725060-20833202:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	672.7181396484375	2	672.318645	1342.62274	-0.72688	-0.00048869	0.33614	0.00022599	-0.39074	-0.0002627	672.3188641172787	96.181	0.71112	96.932	96.602	97.313	0.75045					34	13	3	0	0	0	0.54778	1	36472	36472		49.742	20.305	1	10697000			43661	7723	31985	32240	42593	42593		387			-0.03486898753726564
RLFEDMGLFEA	11	Unmodified	_RLFEDMGLFEA_					0	0	0		ENST00000544307.1_1_12:20725060-20833202:+|nuORF;ENSG00000172572|ENST00000359062|PDE3A	ENST00000544307.1_1_12:20725060-20833202:+|nuORF	ENST00000544307.1_1_12:20725060-20833202:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	664.7208251953125	2	664.321188	1326.62782	-0.6589	-0.00043772	-1.2425	-0.00082539	-1.9014	-0.0012631	664.8215377879953	119.59	0.71234	119.59	119.28	120	0					19	13	2	0	0	0	0.60697	2	44292	44292;44362		22.775	8.3696	1	52232000			43662	7723	31985	32241	42594;42595	42594					-0.022425948910949955
RLFEEVLGV	9	Unmodified	_RLFEEVLGV_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-SECPEP	A375_MHC_IP_R1	1	531.7028198242188	2	531.303124	1060.5917	-0.55779	-0.00029636	0.1758	9.3402E-05	-0.38199	-0.00020295	531.3030900591407	102.75	1.0676	102.75	102.45	103.52	0					52	20	4	0	0	0	0.14554	1	37756	37756		71.922	71.922	1	11228000			43663	4710	31986	32242	42596	42596					0.06382315994369492
RLFENYIEL	9	Unmodified	_RLFENYIEL_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MSMS	A375_MHC_IP_R1	1	598.8170776367188	2	598.819138	1195.62372	-0.30688	-0.00018376	0.10377	6.2137E-05	-0.20311	-0.00012163	598.819210691321	105.1	0.55807	105.1	104.79	105.35	0					31	10	5	0	0	0	0.073067	2	38619	38619;38623		55.503	13.663	1	9024900			43664	3101	31987	32243	42597;42598	42597					0.03373683677500594
RLFENYIEL	9	Unmodified	_RLFENYIEL_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-SECPEP	A375_MHC_IP_R2	2	599.2186889648438	2	598.819138	1195.62372	-0.48407	-0.00028987	-0.4065	-0.00024342	-0.89057	-0.00053329	598.8188075813752	104.21	0.71286	104.98	104.65	105.36	0.76308					30	13	3	0	0	0	0.47206	1	39406	39406		41.956	17.935	1	8824900			43665	3101	31987	32243	42599	42599					0.03373683677500594
RLFEVPHEL	9	Unmodified	_RLFEVPHEL_					0	0	0		nc|ENSG00000133121|Q9Y3M8-3|STARD13;nc|ENSG00000133121|Q9Y3M8-4|STARD13;nc|ENSG00000133121|Q9Y3M8-2|STARD13;ENSG00000133121|ENST00000336934|STARD13	nc|ENSG00000133121|Q9Y3M8-3|STARD13	nc|ENSG00000133121|Q9Y3M8-3|STARD13	MULTI-SECPEP	A375_MHC_IP_R1	1	380.94525146484375	3	380.545108	1138.61349	0.45431	0.00017289	-0.47298	-0.00017999	-0.018672	-7.1057E-06	380.54495635235185	70.449	0.36	70.449	70.237	70.597	0					9	6	2	0	0	0	0.78353	1	25624	25624		9.544	6.2243	1	964860			43666	4490	31988	32244	42600	42600					0.04973120742965875
RLFEVPHEL	9	Unmodified	_RLFEVPHEL_					0	0	0		nc|ENSG00000133121|Q9Y3M8-3|STARD13;nc|ENSG00000133121|Q9Y3M8-4|STARD13;nc|ENSG00000133121|Q9Y3M8-2|STARD13;ENSG00000133121|ENST00000336934|STARD13	nc|ENSG00000133121|Q9Y3M8-3|STARD13	nc|ENSG00000133121|Q9Y3M8-3|STARD13	MULTI-MSMS	A375_MHC_IP_R2	2	380.9450378417969	3	380.545108	1138.61349	0.08701	3.3111E-05	-0.44526	-0.00016944	-0.35825	-0.00013633	380.5450382212566	69.592	0.61156	70.326	70.081	70.693	0.73421					24	11	3	0	0	0	0.66474	1	26378	26378		10.151	5.2536	1	1455400			43667	4490	31988	32244	42601	42601					0.04973120742965875
RLFEVPHEL	9	Unmodified	_RLFEVPHEL_					0	0	0		nc|ENSG00000133121|Q9Y3M8-3|STARD13;nc|ENSG00000133121|Q9Y3M8-4|STARD13;nc|ENSG00000133121|Q9Y3M8-2|STARD13;ENSG00000133121|ENST00000336934|STARD13	nc|ENSG00000133121|Q9Y3M8-3|STARD13	nc|ENSG00000133121|Q9Y3M8-3|STARD13	MULTI-SECPEP	A375_MHC_IP_R2	2	570.7132568359375	2	570.314023	1138.61349	-0.22036	-0.00012567	-0.4567	-0.00026046	-0.67706	-0.00038614	570.313778831152	69.516	0.66074	70.25	69.879	70.54	0.73421					32	12	4	0	0	0	0.28318	1	26334	26334		43.982	24.725	1	6125600			43668	4490	31988	32244	42602	42602					0.04973120742965875
RLFFRKEVFTP	11	Unmodified	_RLFFRKEVFTP_					0	0	0		nc|ENSG00000137474|Q13402-5|MYO7A;nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;ENST00000481328.7_1_11:76890894-76905079:+|nuORF	nc|ENSG00000137474|Q13402-5|MYO7A	nc|ENSG00000137474|Q13402-5|MYO7A	MULTI-SECPEP	A375_MHC_IP_R1	1	721.1488647460938	2	720.411529	1438.8085	-0.84798	-0.0006109	2.2341	0.0016095	1.3862	0.0009986	720.4128384105508	134.85	0.75883	134.85	134.27	135.03	0					16	14	2	0	0	0	0.99738	1	51980	51980		5.2969	0.39987	1	1930200			43669	4886	31989	32245	42603	42603					0.10665291547911693
RLFGATRTW	9	Unmodified	_RLFGATRTW_					0	0	0		ENSG00000183617|ENST00000330133|MRPL54	ENSG00000183617|ENST00000330133|MRPL54	ENSG00000183617|ENST00000330133|MRPL54	MULTI-SECPEP	A375_MHC_IP_R2	2	370.2733459472656	3	369.873447	1106.59851	0.12021	4.4461E-05	0.16562	6.126E-05	0.28583	0.00010572	369.8733519906073	50.232	0.50699	50.986	50.804	51.311	0.75406					18	9	3	0	0	0	0.54812	1	18919	18919		18.721	11.62	1	1648300			43670	8510	31990	32246	42604	42604					0.04947673665606089
RLFGAVVRW	9	Unmodified	_RLFGAVVRW_					0	0	0		nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000064726|ENST00000261721|BTBD1	nc|ENSG00000064726|Q9H0C5-2|BTBD1	nc|ENSG00000064726|Q9H0C5-2|BTBD1	MULTI-SECPEP	A375_MHC_IP_R1	1	552.72705078125	2	552.327268	1102.63998	-0.45759	-0.00025274	0.12474	6.8898E-05	-0.33284	-0.00018384	552.32712725338	79.335	0.51302	79.335	79.061	79.574	0					20	9	3	0	0	0	0.76827	1	28956	28956		10.824	5.5933	1	2056800			43671	1358	31991	32247	42605	42605					0.09276854424933845
RLFGAVVRW	9	Unmodified	_RLFGAVVRW_					0	0	0		nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000064726|ENST00000261721|BTBD1	nc|ENSG00000064726|Q9H0C5-2|BTBD1	nc|ENSG00000064726|Q9H0C5-2|BTBD1	MULTI-MSMS	A375_MHC_IP_R2	2	552.7268676757812	2	552.327268	1102.63998	-0.75317	-0.000416	0.18028	9.9571E-05	-0.5729	-0.00031643	552.3272406649822	78.211	0.55947	78.954	78.624	79.183	0.74293					16	10	2	0	0	0	0.65721	1	29720	29720		10.824	5.0635	1	2860100			43672	1358	31991	32247	42606	42606					0.09276854424933845
RLFGQHEQL	9	Unmodified	_RLFGQHEQL_					0	0	0		nc|ENSG00000089101|Q8NHU2-4|CFAP61;ENSG00000089101|ENST00000245957|CFAP61	nc|ENSG00000089101|Q8NHU2-4|CFAP61	nc|ENSG00000089101|Q8NHU2-4|CFAP61	MULTI-SECPEP	A375_MHC_IP_R1	1	376.9368591308594	3	376.536724	1126.58834	0.43873	0.0001652	-0.070389	-2.6504E-05	0.36834	0.00013869	376.5365984536995	56.115	0.60773	56.115	55.79	56.397	0					29	11	4	0	0	0	0.73363	1	20066	20066		10.8	0	1	6947000			43673	1914	31992	32248	42607	42607					0.030110659403590034
RLFHDSAVTSV	11	Unmodified	_RLFHDSAVTSV_					0	0	0		nc|ENSG00000119599|Q8WV16-4|DCAF4;nc|ENSG00000119599|Q8WV16-2|DCAF4;nc|ENSG00000119599|Q8WV16-3|DCAF4;nc|ENSG00000119599|Q8WV16-5|DCAF4;ENSG00000119599|ENST00000358377|DCAF4;ENSG00000182308|ENST00000333141|DCAF4L1	nc|ENSG00000119599|Q8WV16-4|DCAF4;ENSG00000182308|ENST00000333141|DCAF4L1	ENSG00000182308|ENST00000333141|DCAF4L1	MULTI-MSMS	A375_MHC_IP_R1	1	411.6193542480469	3	411.219172	1230.63569	0.063205	2.5991E-05	-0.10316	-4.2423E-05	-0.039959	-1.6432E-05	411.5533556067057	43.961	0.30456	43.961	43.757	44.061	0					9	5	2	0	0	0	0.62672	1	15342	15342		21.241	12.49	1	2206300			43674	8398;3603	31993	32249	42608	42608					0.029593004206844853
RLFHDSAVTSV	11	Unmodified	_RLFHDSAVTSV_					0	0	0		nc|ENSG00000119599|Q8WV16-4|DCAF4;nc|ENSG00000119599|Q8WV16-2|DCAF4;nc|ENSG00000119599|Q8WV16-3|DCAF4;nc|ENSG00000119599|Q8WV16-5|DCAF4;ENSG00000119599|ENST00000358377|DCAF4;ENSG00000182308|ENST00000333141|DCAF4L1	nc|ENSG00000119599|Q8WV16-4|DCAF4;ENSG00000182308|ENST00000333141|DCAF4L1	ENSG00000182308|ENST00000333141|DCAF4L1	MULTI-MATCH	A375_MHC_IP_R2	2		3	411.219172	1230.63569	0.10793	4.4382E-05	-0.13132	-5.3999E-05	-0.023388	-9.6176E-06	411.2190933876219	43.011	0.30275	43.783	43.623	43.926	0.7724	-0.088931	-2.4051E-05	NaN	21.241	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1730500			43675	8398;3603	31993	32249							0.029593004206844853
RLFHKTVYL	9	Unmodified	_RLFHKTVYL_					0	0	0		ENST00000397776.2_1_1:158424733-158425060:+|nuORF;nc|ENSG00000149547|O14681-3|EI24;ENSG00000149547|ENST00000278903|EI24	ENST00000397776.2_1_1:158424733-158425060:+|nuORF	ENST00000397776.2_1_1:158424733-158425060:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	393.3011779785156	3	392.901114	1175.68151	0.32069	0.000126	0.002163	8.4984E-07	0.32285	0.00012685	392.9011245980198	43.015	0.66098	43.015	42.739	43.4	0					30	12	4	0	0	0	0.49205	1	14917	14917		26.021	15.705	1	7948700			43676	5812	31994	32250	42609	42609					0.10069990393617445
RLFHKTVYL	9	Unmodified	_RLFHKTVYL_					0	0	0		ENST00000397776.2_1_1:158424733-158425060:+|nuORF;nc|ENSG00000149547|O14681-3|EI24;ENSG00000149547|ENST00000278903|EI24	ENST00000397776.2_1_1:158424733-158425060:+|nuORF	ENST00000397776.2_1_1:158424733-158425060:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	393.6155700683594	3	392.901114	1175.68151	-0.21949	-8.6236E-05	0.079551	3.1256E-05	-0.13993	-5.4981E-05	392.90118859824867	41.735	0.66335	42.51	42.198	42.862	0.77451					29	12	3	0	0	0	0.26169	1	15467	15467		33.445	6.3565	1	6111900			43677	5812	31994	32250	42610	42610					0.10069990393617445
RLFHSPRHR	9	Unmodified	_RLFHSPRHR_					0	0	0			REV__ENST00000395254.7_1_10:64136134-64136248:+|nuORF	REV__ENST00000395254.7_1_10:64136134-64136248:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	402.92901611328125	3	402.563607	1204.66899	-0.24541	-9.8791E-05	-0.85226	-0.00034309	-1.0977	-0.00044188	402.56296752468984	23.881	0.20439	24.511	24.384	24.588	0.63014					8	3	3	0	0	0	0.69884	1	7764	7764		7.1017	1.2336	1	4560700	+		43678	24319	31995	32251	42611	42611					0.07484391773937205
RLFIDKHPV	9	Unmodified	_RLFIDKHPV_					0	0	0		nc|ENSG00000164393|Q8IZF7-2|ADGRF2P;nc|ENSG00000164393|Q8IZF7|ADGRF2P	nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	MULTI-SECPEP	A375_MHC_IP_R1	1	376.1156311035156	3	375.557348	1123.65021	0.45253	0.00016995	-0.13773	-5.1724E-05	0.3148	0.00011823	375.55727331443467	72.578	0.81098	72.578	72.22	73.031	0					23	15	2	0	0	0	0.75519	1	26369	26369		10.151	3.5202	1	1005500			43679	14729	31996	32252	42612	42612					0.09333417359516716
RLFKQIVSA	9	Unmodified	_RLFKQIVSA_					0	0	0		nc|ENSG00000173334|Q96RU8-2|TRIB1;ENSG00000173334|ENST00000311922|TRIB1	nc|ENSG00000173334|Q96RU8-2|TRIB1	nc|ENSG00000173334|Q96RU8-2|TRIB1	MULTI-SECPEP	A375_MHC_IP_R1	1	531.7086181640625	2	531.326934	1060.63931	-0.60924	-0.0003237	-0.4609	-0.00024489	-1.0701	-0.00056859	531.3267343950172	46.337	0.30052	46.337	46.144	46.444	0					9	5	2	0	0	0	0.59098	1	16242	16242		27.629	19.719	1	1907300			43680	7789	31997	32253	42613	42613					0.1114201498521652
RLFKQIVSA	9	Unmodified	_RLFKQIVSA_					0	0	0		nc|ENSG00000173334|Q96RU8-2|TRIB1;ENSG00000173334|ENST00000311922|TRIB1	nc|ENSG00000173334|Q96RU8-2|TRIB1	nc|ENSG00000173334|Q96RU8-2|TRIB1	MULTI-SECPEP	A375_MHC_IP_R2	2	531.708251953125	2	531.326934	1060.63931	-0.71216	-0.00037839	0.10195	5.4169E-05	-0.61021	-0.00032422	531.3268154952308	45.359	0.3046	46.124	45.897	46.201	0.76519					8	5	2	0	0	0	0.59098	1	16936	16936		27.629	10.516	1	1584000			43681	7789	31997	32253	42614	42614					0.1114201498521652
RLFNEHLVSA	10	Unmodified	_RLFNEHLVSA_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;nc|ENSG00000198198|Q5T011-4|SZT2;SZT2|p.T1044Ifs*3|1|0.17|ENSG00000198198|chr1:43426802-43426802|C/-|frameshift_variant	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	A375_MHC_IP_R1	1	396.2838439941406	3	395.884012	1184.63021	0.015597	6.1744E-06	-0.077124	-3.0532E-05	-0.061527	-2.4358E-05	395.8840182828715	51.116	0.50819	51.116	50.864	51.373	0					20	9	4	0	0	0	0.51635	1	18150	18150		27.129	11.59	1	3116000			43682	9241	31998	32254	42615	42615					0.04527621628903944
RLFNEHLVSA	10	Unmodified	_RLFNEHLVSA_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;nc|ENSG00000198198|Q5T011-4|SZT2;SZT2|p.T1044Ifs*3|1|0.17|ENSG00000198198|chr1:43426802-43426802|C/-|frameshift_variant	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	A375_MHC_IP_R2	2	396.2837219238281	3	395.884012	1184.63021	-0.32639	-0.00012921	0.10623	4.2053E-05	-0.22016	-8.7159E-05	395.8840292455007	50.17	0.4558	50.924	50.753	51.209	0.75406					18	8	3	0	0	0	0.32622	1	18874	18874		38.559	17.688	1	4781000			43683	9241	31998	32254	42616	42616					0.04527621628903944
RLFPDLLAR	9	Unmodified	_RLFPDLLAR_					0	0	0			REV__ENSG00000234409|ENST00000439765|CCDC188	REV__ENSG00000234409|ENST00000439765|CCDC188	MULTI-MSMS	A375_MHC_IP_R2	2	368.3095397949219	3	367.557348	1099.65021	-0.13415	-4.9309E-05	-0.85724	-0.00031508	-0.99139	-0.00036439	367.5570014237467	33.303	0.60987	34.056	33.84	34.45	0.75225					27	11	4	0	0	0	0.66474	1	11968	11968		10.151	0.76745	1	7944400	+		43684	22751	31999	32255	42617	42617					0.10437417359503343
RLFPGRVSV	9	Unmodified	_RLFPGRVSV_					0	0	0		ENSG00000136444|ENST00000258955|RSAD1;nc|ENSG00000136444|Q9HA92-2|RSAD1	ENSG00000136444|ENST00000258955|RSAD1	ENSG00000136444|ENST00000258955|RSAD1	MULTI-SECPEP	A375_MHC_IP_R1	1	516.2112426757812	2	515.811451	1029.60835	-0.4982	-0.00025698	0.17077	8.8087E-05	-0.32743	-0.00016889	515.8115017552916	50.891	0.65778	50.891	50.613	51.27	0					41	12	5	0	0	0	0.5212	1	18001	18001		26.268	7.0112	1	24613000			43685	4788	32000	32256	42618	42618					0.0947286167099719
RLFPGRVSV	9	Unmodified	_RLFPGRVSV_					0	0	0		ENSG00000136444|ENST00000258955|RSAD1;nc|ENSG00000136444|Q9HA92-2|RSAD1	ENSG00000136444|ENST00000258955|RSAD1	ENSG00000136444|ENST00000258955|RSAD1	MULTI-SECPEP	A375_MHC_IP_R2	2	516.2110595703125	2	515.811451	1029.60835	-1.0146	-0.00052334	0.11683	6.0263E-05	-0.89777	-0.00046308	515.8114737560579	49.816	0.8647	50.57	50.294	51.159	0.75406					47	16	4	0	0	0	0.24324	1	18694	18694		38.176	23.337	1	19933000			43686	4788	32000	32256	42619	42619					0.0947286167099719
RLFPSAAQV	9	Unmodified	_RLFPSAAQV_					0	0	0		nc|ENSG00000115107|Q658P3-4|STEAP3;nc|ENSG00000115107|Q658P3-3|STEAP3;nc|ENSG00000115107|Q658P3|STEAP3;ENSG00000115107|ENST00000393110|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	MULTI-SECPEP	A375_MHC_IP_R2	2	495.18170166015625	2	494.782359	987.550165	-0.84277	-0.00041699	-0.0239	-1.1825E-05	-0.86667	-0.00042881	494.78242159108777	59.763	0.50464	60.51	60.299	60.804	0.74714					15	9	2	0	0	0	0.47674	1	22669	22669		36.506	8.8774	1	2353000			43687	3269	32001	32257	42620	42620					0.0558918002569726
RLFRDKIVGA	10	Unmodified	_RLFRDKIVGA_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MSMS	A375_MHC_IP_R2	2	392.63970947265625	3	392.240018	1173.69823	-0.69574	-0.0002729	0.58619	0.00022993	-0.10955	-4.2972E-05	392.2401950063242	36.768	0.35677	37.539	37.359	37.716	0.7709					10	6	2	0	0	0	0.67124	1	13442	13442		15.538	4.6395	1	3183000			43688	8815	32002	32258	42621	42621					0.11832491279551505
RLFRDKIVGA	10	Unmodified	_RLFRDKIVGA_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MATCH	A375_MHC_IP_R1	1		3	392.240018	1173.69823	0.00072727	2.8526E-07	0.33817	0.00013264	0.3389	0.00013293	392.24009714543257	37.932	0.51134	37.932	37.556	38.067	0	0.19692	-0.00010494	NaN	15.538	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2823200			43689	8815	32002	32258							0.11832491279551505
RLFRKEQLL	9	Unmodified	_RLFRKEQLL_					0	0	0			REV__nc|ENSG00000100325|Q9H1I8-2|ASCC2	REV__nc|ENSG00000100325|Q9H1I8-2|ASCC2	MULTI-MSMS	A375_MHC_IP_R1	1	401.98309326171875	3	401.583785	1201.72953	-0.35236	-0.0001415	-0.81458	-0.00032712	-1.1669	-0.00046862	401.58346057363593	119.01	0.4563	119.01	118.78	119.23	0					19	8	3	0	0	0	0.74768	1	43931	43931		2.7352	0	1	29382000	+		43690	17074	32003	32259	42622	42622					0.1367306431363886
RLFRQTRP	8	Unmodified	_RLFRQTRP_					0	0	0			REV__ENST00000469550.6_1_5:141000686-141000896:-|nuORF	REV__ENST00000469550.6_1_5:141000686-141000896:-|nuORF	MSMS	A375_MHC_IP_R2	2	537.685302734375	2	537.319974	1072.6254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.7	1	140.74	140.24	141.24	0.04216								0	0	0	0.16876	1	55066	55066		5.2307	0.90143	1		+		43691	25095	32004	32260	42623	42623					0.09198782276780548
RLFSKGFLV	9	Unmodified	_RLFSKGFLV_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MSMS	A375_MHC_IP_R1	1	356.6181640625	3	356.218443	1065.6335	-0.030081	-1.0715E-05	-0.090562	-3.226E-05	-0.12064	-4.2975E-05	356.2184120267652	76.042	0.60608	76.042	75.764	76.37	0					28	11	3	0	0	0	0.39657	1	27714	27714		24.882	15.338	1	8804100			43692	8230	32005	32261	42624	42624					0.10330916473549223
RLFSKGFLV	9	Unmodified	_RLFSKGFLV_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-SECPEP	A375_MHC_IP_R1	1	534.2235107421875	2	533.824027	1065.6335	-0.7037	-0.00037565	0.10817	5.7742E-05	-0.59553	-0.00031791	533.8240588069293	76.063	0.65663	76.063	75.815	76.471	0					27	12	3	0	0	0	0.43207	1	27708	27708		33.445	17.296	1	7807600			43693	8230	32005	32261	42625	42625					0.10330916473549223
RLFSKGFLV	9	Unmodified	_RLFSKGFLV_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MSMS	A375_MHC_IP_R2	2	356.6182556152344	3	356.218443	1065.6335	-0.27854	-9.9222E-05	-0.014313	-5.0986E-06	-0.29286	-0.00010432	356.2184070679936	74.807	0.86176	75.545	75.264	76.126	0.73752					31	16	3	0	0	0	0.21241	1	28383	28383		37.075	23.46	1	6068200			43694	8230	32005	32261	42626	42626					0.10330916473549223
RLFSLLKVR	9	Unmodified	_RLFSLLKVR_					0	0	0			REV__ENST00000313349.3_1_2:64861977-64862394:-|nuORF	REV__ENST00000313349.3_1_2:64861977-64862394:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	378.6123962402344	3	377.916876	1130.7288	0.38106	0.00014401	-2.0849	-0.0007879	-1.7038	-0.00064389	378.2495678069702	50.997	0.40483	50.997	50.663	51.068	0					9	7	2	0	0	0	0.7911	1	18050	18050		4.5289	1.7937	1	336590	+		43695	23519	32006	32262	42627	42627					0.16866269664592437
RLFSNIPEI	9	Unmodified	_RLFSNIPEI_					0	0	0		nc|ENSG00000171680|O94827-4|PLEKHG5;ENSG00000171680|ENST00000377728|PLEKHG5;nc|ENSG00000171680|O94827-3|PLEKHG5;nc|ENSG00000171680|O94827-7|PLEKHG5	nc|ENSG00000171680|O94827-4|PLEKHG5	nc|ENSG00000171680|O94827-4|PLEKHG5	MULTI-MSMS	A375_MHC_IP_R1	1	545.2080688476562	2	544.808574	1087.60259	-0.49484	-0.0002696	0.35429	0.00019302	-0.14055	-7.6574E-05	544.8085011919383	96.615	0.86362	96.615	96.223	97.086	0					44	16	5	0	0	0	0.033808	1	35486	35486		69.105	14.331	1	7455900			43696	7627	32007	32263	42628	42628					0.06229718368649628
RLFSRLYTY	9	Unmodified	_RLFSRLYTY_					0	0	0		nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	MULTI-MSMS	A375_MHC_IP_R1	1	407.9330139160156	3	406.892507	1217.65569	-0.31087	-0.00012649	0.46145	0.00018776	0.15057	6.1268E-05	406.8926578653417	64.592	1.067	64.592	64.242	65.309	0					63	20	4	0	0	0	0.59266	1	23376	23376		15.248	7.093	1	34059000			43697	4008	32008	32264	42629	42629					0.055570961513240036
RLFSRLYTY	9	Unmodified	_RLFSRLYTY_					0	0	0		nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	MULTI-SECPEP	A375_MHC_IP_R1	1	610.2162475585938	2	609.835123	1217.65569	-0.38064	-0.00023213	0.10954	6.6801E-05	-0.2711	-0.00016533	609.8351466108232	64.606	0.91349	64.606	64.292	65.206	0					51	17	4	0	0	0	0.41731	1	23353	23353		38.176	7.539	1	31586000			43698	4008	32008	32264	42630	42630					0.055570961513240036
RLFSRLYTY	9	Unmodified	_RLFSRLYTY_					0	0	0		nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	MULTI-MSMS	A375_MHC_IP_R2	2	407.2926025390625	3	406.892507	1217.65569	0.073302	2.9826E-05	-0.46788	-0.00019038	-0.39458	-0.00016055	406.89229575992874	63.526	1.1689	64.266	63.835	65.004	0.74022					64	22	4	0	0	0	0.39657	1	24248	24248		24.882	11.363	1	39222000			43699	4008	32008	32264	42631	42631					0.055570961513240036
RLFSRLYTY	9	Unmodified	_RLFSRLYTY_					0	0	0		nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	MULTI-SECPEP	A375_MHC_IP_R2	2	610.234619140625	2	609.835123	1217.65569	-0.41362	-0.00025224	-0.41561	-0.00025345	-0.82923	-0.00050569	609.8348109630232	63.525	0.96533	64.265	63.885	64.85	0.74022					53	18	5	0	0	0	0.4557	1	24030	24030		51.415	24.532	1	34028000			43700	4008	32008	32264	42632	42632					0.055570961513240036
RLFSSIVTV	9	Unmodified	_RLFSSIVTV_					0	0	0		ENSG00000167264|ENST00000565263|DUS2	ENSG00000167264|ENST00000565263|DUS2	ENSG00000167264|ENST00000565263|DUS2	MULTI-SECPEP	A375_MHC_IP_R1	1	511.6637878417969	2	511.305667	1020.59678	-0.58397	-0.00029859	0.24123	0.00012334	-0.34275	-0.00017525	511.30575336943946	90.06	1.5705	90.06	89.628	91.199	0					79	30	5	0	0	0	0.03109	1	33061	33061		92.653	10.763	1	52795000			43701	7173	32009	32265	42633	42633					0.08730619857010424
RLFSSIVTV	9	Unmodified	_RLFSSIVTV_					0	0	0		ENSG00000167264|ENST00000565263|DUS2	ENSG00000167264|ENST00000565263|DUS2	ENSG00000167264|ENST00000565263|DUS2	MULTI-SECPEP	A375_MHC_IP_R2	2	511.6632385253906	2	511.305667	1020.59678	-0.67318	-0.0003442	-0.13935	-7.125E-05	-0.81253	-0.00041545	511.3055717080763	89.029	1.572	89.761	89.381	90.953	0.7318					86	30	5	0	0	0	0.056023	1	33923	33923		85.642	26.963	1	45789000			43702	7173	32009	32265	42634	42634					0.08730619857010424
RLFTLPLLHYL	11	Unmodified	_RLFTLPLLHYL_					0	0	0		ENSG00000130764|ENST00000378251|LRRC47	ENSG00000130764|ENST00000378251|LRRC47	ENSG00000130764|ENST00000378251|LRRC47	MSMS	A375_MHC_IP_R1	1	693.8172607421875	2	693.418823	1384.82309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.28	1	144.28	143.78	144.78	0								0	0	0	0.16353	1	55334	55334		0.35063	0	1				43703	4280	32010	32266	42635	42635					0.14607363696086395
RLFVGEPVW	9	Unmodified	_RLFVGEPVW_					0	0	0		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	MULTI-SECPEP	A375_MHC_IP_R1	1	552.2058715820312	2	551.805834	1101.59712	-0.52592	-0.0002902	-0.019023	-1.0497E-05	-0.54494	-0.0003007	551.8057514018898	100.39	0.91129	100.39	100.03	100.94	0					48	17	4	0	0	0	0.10103	1	36867	36867		62.573	7.7991	1	21344000			43704	8417	32011	32267	42636	42636					0.05038039576857045
RLFVGEPVW	9	Unmodified	_RLFVGEPVW_					0	0	0		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	MULTI-SECPEP	A375_MHC_IP_R2	2	551.6452026367188	2	551.805834	1101.59712	-0.55306	-0.00030518	-0.16122	-8.896E-05	-0.71428	-0.00039414	551.8056277886573	99.436	0.91641	100.2	99.808	100.72	0.75997					52	17	4	0	0	0	0.16676	1	37716	37716		58.679	10.333	1	15806000			43705	8417	32011	32267	42637	42637					0.05038039576857045
RLFYHDNEW	9	Unmodified	_RLFYHDNEW_					0	0	0			REV__ENSG00000169814|ENST00000643237|BTD	REV__ENSG00000169814|ENST00000643237|BTD	MULTI-SECPEP	A375_MHC_IP_R1	1	427.6001892089844	3	427.2	1278.57817	-0.2278	-9.7317E-05	0.65305	0.00027898	0.42525	0.00018167	427.2002785345207	47.123	0.76729	47.123	46.749	47.517	0					30	14	3	0	0	0	0.78348	1	16557	16557		4.897	4.897	1	5603900	+		43706	20944	32012	32268	42638	42638					-0.04997541784882742
RLFYHDNEW	9	Unmodified	_RLFYHDNEW_					0	0	0			REV__ENSG00000169814|ENST00000643237|BTD	REV__ENSG00000169814|ENST00000643237|BTD	MULTI-MSMS	A375_MHC_IP_R2	2	427.6003112792969	3	427.2	1278.57817	-0.091451	-3.9068E-05	0.47916	0.0002047	0.38771	0.00016563	427.2001773780087	46.314	0.86349	47.08	46.603	47.466	0.76518					39	16	3	0	0	0	0.6898	1	17308	17308		4.897	4.897	1	3790000	+		43707	20944	32012	32268	42639	42639					-0.04997541784882742
RLFYIRTP	8	Unmodified	_RLFYIRTP_					0	0	0		ENST00000272433.6_1_2:73228703-73285715:-|nuORF;ENST00000461352.5_1_2:73195640-73285715:-|nuORF	ENST00000272433.6_1_2:73228703-73285715:-|nuORF	ENST00000272433.6_1_2:73228703-73285715:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	356.2781677246094	3	355.87831	1064.6131	-0.0207	-7.3667E-06	-0.05107	-1.8175E-05	-0.071769	-2.5541E-05	355.87822589222026	64.262	0.60761	64.262	63.939	64.546	0					26	11	3	0	0	0	0.972	1	23245	23245		1.6526	0	1	3031600			43708	10385	32013	32269	42640	42640					0.08337745813742004
RLFYTTSKL	9	Unmodified	_RLFYTTSKL_					0	0	0		DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant;ENSG00000150990|ENST00000308736|DHX37	DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant	DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	377.6448059082031	3	376.885241	1127.63389	0.39228	0.00014784	-0.16838	-6.3461E-05	0.2239	8.4384E-05	376.88507807321406	62.075	0.51202	62.075	61.788	62.3	0					21	9	4	0	0	0	0.71541	1	22357	22357		7.609	7.609	1	3870200			43709	741	32014	32270	42641	42641					0.07518291402743671
RLGAWPHLAN	10	Unmodified	_RLGAWPHLAN_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-SECPEP	A375_MHC_IP_R2	2	378.58416748046875	3	378.87708	1133.60941	-0.23092	-8.749E-05	4.0087	0.0015188	3.7778	0.0014313	378.87728110190017	28.255	0.20197	28.934	28.858	29.06	0.67857					5	3	2	0	0	0	0.8125	1	9788	9788		15.739	11.023	1	817910			43710	6444	32015	32271	42642	42642					0.047950760398634884
RLGDQPVYL	9	Unmodified	_RLGDQPVYL_					0	0	0		nc|ENSG00000167601|P30530-2|AXL;ENSG00000167601|ENST00000301178|AXL	nc|ENSG00000167601|P30530-2|AXL	nc|ENSG00000167601|P30530-2|AXL	MULTI-SECPEP	A375_MHC_IP_R1	1	531.1920776367188	2	530.792924	1059.57129	-0.5851	-0.00031056	0.17782	9.4385E-05	-0.40728	-0.00021618	530.7928439579672	63.815	0.56046	63.815	63.58	64.141	0					29	10	4	0	0	0	0.51395	1	23084	23084		45.7	11.597	1	5149600			43711	7198	32016	32272	42643	42643					0.04389145334562272
RLGDVVRV	8	Unmodified	_RLGDVVRV_					0	0	0		nc|ENSG00000167925|Q8N2G8-3|GHDC;ENSG00000167925|ENST00000587427|GHDC;ENST00000585735.1_1_17:40342468-40343067:-|nuORF;nc|ENSG00000167925|Q8N2G8-2|GHDC	nc|ENSG00000167925|Q8N2G8-3|GHDC	nc|ENSG00000167925|Q8N2G8-3|GHDC	MULTI-MSMS	A375_MHC_IP_R1	1	457.6824035644531	2	457.282526	912.550499	-0.19745	-9.0288E-05	0.10813	4.9444E-05	-0.089319	-4.0844E-05	457.2825199427545	40.333	0.61095	40.333	40.151	40.762	0					30	11	4	0	0	0	0.57987	1	13830	13830		45.7	9.5726	1	39984000			43712	7237	32017	32273	42644	42644					0.09072599745559273
RLGDVVRV	8	Unmodified	_RLGDVVRV_					0	0	0		nc|ENSG00000167925|Q8N2G8-3|GHDC;ENSG00000167925|ENST00000587427|GHDC;ENST00000585735.1_1_17:40342468-40343067:-|nuORF;nc|ENSG00000167925|Q8N2G8-2|GHDC	nc|ENSG00000167925|Q8N2G8-3|GHDC	nc|ENSG00000167925|Q8N2G8-3|GHDC	MULTI-MSMS	A375_MHC_IP_R2	2	457.682373046875	2	457.282526	912.550499	-0.35464	-0.00016217	0.13545	6.1941E-05	-0.21918	-0.00010023	457.28252713679166	39.419	0.45667	40.194	40.016	40.473	0.77451					25	8	4	0	0	0	0.38299	1	14535	14535		53.833	17.706	1	51800000			43713	7237	32017	32273	42645	42645					0.09072599745559273
RLGELLPV	8	Unmodified	_RLGELLPV_					0	0	0			REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	MULTI-MSMS	A375_MHC_IP_R1	1	449.6833190917969	2	448.781828	895.549102	-0.016116	-7.2327E-06	-0.29333	-0.00013164	-0.30944	-0.00013887	448.781649556376	88.998	0.61098	88.998	88.764	89.375	0					26	11	3	0	0	0	0.77028	1	32682	32682		14.838	0	1	5129600	+		43714	20427	32018	32274	42646	42646					0.09714965656803543
RLGFTPSV	8	Unmodified	_RLGFTPSV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.T2707Mfs*5|1|0.21|ENSG00000196367|chr7:98976664-98976688|CGCTGATGTTGGAGCACCAGGCTTT/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MSMS	A375_MHC_IP_R2	2	438.6632080078125	2	438.750527	875.486502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.782	1	58.531	58.031	59.031	0.74894								0	0	0	0.16876	1	21851	21851		21.747	0	1				43715	9031	32019	32275	42647	42647					0.04377819588626153
RLGGIPVGV	9	Unmodified	_RLGGIPVGV_					0	0	0		nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB;nc|ENSG00000076555|O00763-3|ACACB	nc|ENSG00000278540|Q13085|ACACA;nc|ENSG00000076555|O00763-2|ACACB	nc|ENSG00000278540|Q13085|ACACA	MULTI-MSMS	A375_MHC_IP_R2	2	434.6741027832031	2	434.27417	866.533787	-0.33789	-0.00014674	-0.43733	-0.00018992	-0.77521	-0.00033666	434.274267064183	65.171	0.61021	65.909	65.562	66.172	0.73811					38	11	4	0	0	0	0.1478	1	24762	24762		42.095	9.9776	1	7597400			43716	10037;1636	32020	32276	42648	42648					0.09518098859609836
RLGGQLPVV	9	Unmodified	_RLGGQLPVV_					0	0	0		nc|ENSG00000019144|Q86UU1-3|PHLDB1;ENST00000532517.5_1_11:118498004-118527530:+|nuORF;nc|ENSG00000019144|Q86UU1-2|PHLDB1;ENSG00000019144|ENST00000600882|PHLDB1	nc|ENSG00000019144|Q86UU1-3|PHLDB1	nc|ENSG00000019144|Q86UU1-3|PHLDB1	MULTI-SECPEP	A375_MHC_IP_R2	2	470.1922607421875	2	469.792727	937.5709	-0.55898	-0.00026261	0.2051	9.6355E-05	-0.35388	-0.00016625	469.7926934549626	63.086	0.45652	63.828	63.634	64.091	0.74263					20	8	3	0	0	0	0.58271	1	23924	23924		26.884	2.2098	1	2192500			43717	1051	32021	32277	42649	42649					0.09961770405368497
RLGLLGAL	8	Unmodified	_RLGLLGAL_					0	0	0		ENSG00000161956|ENST00000321337|SENP3;SENP3|p.P195L|1|0.43|ENSG00000161956|chr17:7563660-7563660|C/T|missense_variant;SENP3|p.P194S|1|0.5|ENSG00000161956|chr17:7563656-7563656|C/T|missense_variant	ENSG00000161956|ENST00000321337|SENP3	ENSG00000161956|ENST00000321337|SENP3	MULTI-SECPEP	A375_MHC_IP_R1	1	407.1710510253906	2	406.771263	811.527973	-0.3087	-0.00012557	0.55921	0.00022747	0.25051	0.0001019	406.771401227025	75.959	0.55547	75.959	75.714	76.269	0					16	10	2	0	0	0	0.73563	1	27719	27719		28.487	0	1	2597000			43718	6497	32022	32278	42650	42650					0.11467000347931844
RLGLRLPLL	9	Unmodified	_RLGLRLPLL_					0	0	0			REV__ENST00000249075.3_1_22:30639135-30639225:-|nuORF	REV__ENST00000249075.3_1_22:30639135-30639225:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	351.6047668457031	3	350.909721	1049.70733	-0.95977	-0.00033679	1.6446	0.00057709	0.68479	0.0002403	350.9097584067662	28.773	1.2531	29.472	29.132	30.385	0.69872					58	24	3	0	0	0	0.58047	1	10145	10145		10.8	0	1	19662000	+		43719	23119	32023	32279	42651	42651					0.18446884635886818
RLGPVPPGL	9	Unmodified	_RLGPVPPGL_					0	0	0		nc|ENSG00000146833|Q9C037-3|TRIM4;ENSG00000146833|ENST00000349062|TRIM4;nc|ENSG00000146833|Q9C037|TRIM4	nc|ENSG00000146833|Q9C037-3|TRIM4	nc|ENSG00000146833|Q9C037-3|TRIM4	MULTI-MSMS	A375_MHC_IP_R1	1	453.68182373046875	2	453.281995	904.549437	-0.32135	-0.00014566	0.27168	0.00012315	-0.049672	-2.2515E-05	453.2820676337155	65.375	1.8289	65.375	64.649	66.478	0					77	35	3	0	0	0	0.35581	1	23535	23535		26.884	9.9414	1	8309100			43720	5640	32024	32280	42652	42652					0.09334385376666887
RLGPVPPGL	9	Unmodified	_RLGPVPPGL_					0	0	0		nc|ENSG00000146833|Q9C037-3|TRIM4;ENSG00000146833|ENST00000349062|TRIM4;nc|ENSG00000146833|Q9C037|TRIM4	nc|ENSG00000146833|Q9C037-3|TRIM4	nc|ENSG00000146833|Q9C037-3|TRIM4	MULTI-MSMS	A375_MHC_IP_R2	2	453.68170166015625	2	453.281995	904.549437	-0.19701	-8.93E-05	-0.24616	-0.00011158	-0.44316	-0.00020088	453.2818317069638	64.46	1.7286	65.2	64.547	66.275	0.74022					77	33	3	0	0	0	0.46038	1	24293	24293		21.747	4.8044	1	8192400			43721	5640	32024	32280	42653	42653					0.09334385376666887
RLGQAQGSLSF	11	Unmodified	_RLGQAQGSLSF_					0	0	0		nc|ENSG00000106991|P17813-2|ENG;ENSG00000106991|ENST00000373203|ENG	nc|ENSG00000106991|P17813-2|ENG	nc|ENSG00000106991|P17813-2|ENG	MSMS	A375_MHC_IP_R1	1	582.713623046875	2	582.312012	1162.60947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.672	1	68.672	68.172	69.172	0								0	0	0	0.14306	1	24906	24906		24.882	1.0918	1				43722	2719	32025	32281	42654	42654					0.03467031249238062
RLGQKTTFF	9	Unmodified	_RLGQKTTFF_					0	0	0			REV__ENSG00000203995|ENST00000371528|ZYG11A	REV__ENSG00000203995|ENST00000371528|ZYG11A	MULTI-SECPEP	A375_MHC_IP_R2	2	549.6582641601562	2	549.308741	1096.60293	-1.1175	-0.00061384	0.19338	0.00010622	-0.9241	-0.00050762	549.308738887709	24.492	0.35495	25.136	25.009	25.364	0.64368					8	6	2	0	0	0	0.74412	1	8107	8107		14.838	10.509	1	3758600	+		43723	22479	32026	32282	42655	42655					0.058491380885243416
RLGQSHKSSR	10	Unmodified	_RLGQSHKSSR_					0	0	0			REV__nc|ENSG00000152583|Q14515-2|SPARCL1	REV__nc|ENSG00000152583|Q14515-2|SPARCL1	MULTI-MSMS	A375_MHC_IP_R2	2	578.7191162109375	2	578.320703	1154.62685	-0.16654	-9.6313E-05	-0.32899	-0.00019026	-0.49553	-0.00028658	578.3203820061473	125.74	1.4143	126.03	125.67	127.09	0.2951					45	27	2	0	0	0	0.71466	1	49133	49133		5.7319	0.50118	1	10517000	+		43724	19810	32027	32283	42656	42656					0.05572371574908175
RLGQSHKSSR	10	Unmodified	_RLGQSHKSSR_					0	0	0			REV__nc|ENSG00000152583|Q14515-2|SPARCL1	REV__nc|ENSG00000152583|Q14515-2|SPARCL1	MULTI-MSMS	A375_MHC_IP_R2	2	578.7196655273438	2	578.320703	1154.62685	-0.26112	-0.00015101	1.0235	0.00059192	0.7624	0.00044091	578.3205936199026	127.64	3.0413	127.9	126.8	129.84	0.26592					141	59	4	0	0	0	0.71653	1	49847	49847		4.897	0	1	51263000	+		43725	19810	32027	32283	42657	42657					0.05572371574908175
RLGTKDRPRPG	11	Unmodified	_RLGTKDRPRPG_					0	0	0			REV__ENST00000240328.3_1_17:59485871-59486309:+|nuORF	REV__ENST00000240328.3_1_17:59485871-59486309:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	627.2222290039062	2	626.865277	1251.716	-0.53698	-0.00033662	1.8844	0.0011813	1.3474	0.00084464	626.8651539122657	100.95	0.25174	100.95	100.74	100.99	0					6	4	2	0	0	0	0.97182	1	37099	37099		18.373	6.1324	1	802210	+		43726	23094	32028	32284	42658	42658					0.10021206534383964
RLGVISKV	8	Unmodified	_RLGVISKV_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-SECPEP	A375_MHC_IP_R1	1	436.689697265625	2	436.28982	870.565087	-0.11196	-4.8848E-05	-0.095035	-4.1463E-05	-0.207	-9.0311E-05	436.28976640424276	33.56	0.60734	33.56	33.291	33.898	0					28	11	4	0	0	0	0.22517	1	10948	10948		88.954	0	1	26192000			43727	1997	32029	32285	42659	42659					0.12462671893706556
RLGVISKV	8	Unmodified	_RLGVISKV_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	A375_MHC_IP_R2	2	436.689453125	2	436.28982	870.565087	-0.33277	-0.00014518	0.061723	2.6929E-05	-0.27105	-0.00011826	436.2897967228762	32.559	0.50797	33.296	33.061	33.569	0.73692					22	9	3	0	0	0	0.13337	1	11583	11583		88.954	0	1	17448000			43728	1997	32029	32285	42660	42660					0.12462671893706556
RLGYGAPA	8	Unmodified	_RLGYGAPA_					0	0	0			REV__ENST00000367999.8_1_1:161136243-161136698:+|nuORF	REV__ENST00000367999.8_1_1:161136243-161136698:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	403.1214599609375	2	402.72177	803.428987	-0.32131	-0.0001294	-0.59728	-0.00024054	-0.91859	-0.00036994	402.72139875328287	70.81	0.46001	70.81	70.545	71.005	0					17	8	3	0	0	0	0.972	1	25726	25726		5.7604	0	1	4601800	+		43729	23984	32030	32286	42661	42661					0.019409773830375343
RLHDENILL	9	Unmodified	_RLHDENILL_					0	0	0		RPGRIP1L|p.I1149Ffs*6|1|0.8|ENSG00000103494|chr16:53619196-53619196|T/-|frameshift_variant;nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L	RPGRIP1L|p.I1149Ffs*6|1|0.8|ENSG00000103494|chr16:53619196-53619196|T/-|frameshift_variant	RPGRIP1L|p.I1149Ffs*6|1|0.8|ENSG00000103494|chr16:53619196-53619196|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	375.2806091308594	3	374.880379	1121.61931	0.43381	0.00016263	0.27553	0.00010329	0.70934	0.00026592	374.88042613601635	52	0.50928	52	51.728	52.237	0					23	9	3	0	0	0	0.58268	1	18483	18483		15.739	7.8285	1	5251000			43730	2455	32031	32287	42662	42662					0.06336219254626485
RLHDENILL	9	Unmodified	_RLHDENILL_					0	0	0		RPGRIP1L|p.I1149Ffs*6|1|0.8|ENSG00000103494|chr16:53619196-53619196|T/-|frameshift_variant;nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L	RPGRIP1L|p.I1149Ffs*6|1|0.8|ENSG00000103494|chr16:53619196-53619196|T/-|frameshift_variant	RPGRIP1L|p.I1149Ffs*6|1|0.8|ENSG00000103494|chr16:53619196-53619196|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	375.2803649902344	3	374.880379	1121.61931	0.21868	8.198E-05	-0.3227	-0.00012097	-0.10401	-3.8993E-05	374.8801728034283	51.03	0.60745	51.784	51.462	52.07	0.75406					24	11	3	0	0	0	0.50355	1	19186	19186		19.626	6.0111	1	5585700			43731	2455	32031	32287	42663	42663					0.06336219254626485
RLHEKGVLL	9	Unmodified	_RLHEKGVLL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	355.9570007324219	3	355.557348	1063.65021	-0.50142	-0.00017828	-0.36471	-0.00012967	-0.86613	-0.00030796	355.5572114799035	28.154	0.4571	28.833	28.706	29.163	0.67857					13	8	2	0	0	0	0.6191	1	9729	9729		28.234	16.059	1	2849200			43732	5172	32032	32288	42664	42664					0.1209341735950602
RLHERLVAI	9	Unmodified	_RLHERLVAI_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R1	1	369.96466064453125	3	369.564614	1105.67201	0.37908	0.0001401	-0.059224	-2.1887E-05	0.31986	0.00011821	369.56455891997354	37.18	1.3229	37.18	36.895	38.218	0					56	25	4	0	0	0	0.10518	2	12496	12496;12539		49.742	9.017	1	41102000			43733	14788	32033	32289	42665;42666	42665					0.12340222108082344
RLHKMIHDP	9	Unmodified	_RLHKMIHDP_					0	0	0			REV__ENST00000462722.5_1_9:131595865-131599118:-|nuORF	REV__ENST00000462722.5_1_9:131595865-131599118:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	383.27813720703125	3	382.878204	1145.61278	0.38702	0.00014818	-1.1531	-0.0004415	-0.76608	-0.00029332	382.87805318886313	53.66	0.50937	53.66	53.352	53.861	0					27	9	5	0	0	0	0.64971	1	19123	19123		11.495	0.6952	1	4716600	+		43734	21040	32034	32290	42667	42667					0.045800028222402034
RLHKMIHDP	9	Unmodified	_RLHKMIHDP_					0	0	0			REV__ENST00000462722.5_1_9:131595865-131599118:-|nuORF	REV__ENST00000462722.5_1_9:131595865-131599118:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	383.5890808105469	3	382.878204	1145.61278	0.38702	0.00014818	-1.1531	-0.0004415	-0.76608	-0.00029332	382.87805318886313	53.66	0.50937	53.66	53.352	53.861	0					27	9	5	0	0	0	0.71541	1	19142	19142		11.495	0	1	4716600	+		43735	21040	32034	32290	42668	42668					0.045800028222402034
RLHKNFLKL	9	Unmodified	_RLHKNFLKL_					0	0	0		L1MC4a_dup640|chr1:236213889-236214231:+|1.163817221523315|0.3646074349697688|1.67|470.0|3|1|sense	L1MC4a_dup640|chr1:236213889-236214231:+|1.163817221523315|0.3646074349697688|1.67|470.0|3|1|sense	L1MC4a_dup640|chr1:236213889-236214231:+|1.163817221523315|0.3646074349697688|1.67|470.0|3|1|sense	MSMS	A375_MHC_IP_R2	2	390.2848815917969	3	390.248625	1167.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.407	1	63.149	62.649	63.649	0.74263								0	0	0	0.15386	1	23655	23655		15.248	3.7538	1				43736	14260	32035	32291	42669	42669					0.1468938552184227
RLHLKKKKKK	10	Unmodified	_RLHLKKKKKK_					0	0	0		AluSc_dup23857|chr12:55962164-55962478:+|2.035830752585091|0.0102534530081931|7.63|396.0|4|1|sense	AluSc_dup23857|chr12:55962164-55962478:+|2.035830752585091|0.0102534530081931|7.63|396.0|4|1|sense	AluSc_dup23857|chr12:55962164-55962478:+|2.035830752585091|0.0102534530081931|7.63|396.0|4|1|sense	MSMS	A375_MHC_IP_R2	2	653.9599609375	2	653.961523	1305.90849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.93	1	118.54	118.04	119.04	0.60909								0	0	0	0.15642	1	44706	44706		0	0	1				43737	113	32036	32292	42670	42670					0.26777573672370636
RLHNRKRTTWW	11	Unmodified	_RLHNRKRTTWW_					0	0	0		chr7:2257794-2263230|190|58.11|0.51|6.82|-|1|None,SNX8|1	chr7:2257794-2263230|190|58.11|0.51|6.82|-|1|None,SNX8|1	chr7:2257794-2263230|190|58.11|0.51|6.82|-|1|None,SNX8|1	MSMS	A375_MHC_IP_R2	2	518.6349487304688	3	518.623525	1552.84875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.469	1	50.226	49.726	50.726	0.75737								0	0	0	0.16352	1	18589	18589		0.40827	0	1				43738	501	32037	32293	42671	42671					0.09443650991056529
RLHRELVAL	9	Unmodified	_RLHRELVAL_					0	0	0			REV__ENST00000608763.1_1_13:114524697-114525165:-|nuORF	REV__ENST00000608763.1_1_13:114524697-114525165:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	369.96466064453125	3	369.564614	1105.67201	0.14331	5.2962E-05	-0.11432	-4.225E-05	0.028984	1.0712E-05	369.56455275787516	35.936	0.86582	36.699	36.435	37.301	0.76338					40	16	4	0	0	0	0.21241	1	13011	13011		37.075	0	1	31950000	+		43739	21734	32038	32294	42672	42672					0.12340222108082344
RLHRRWRSRAI	11	Unmodified	_RLHRRWRSRAI_					0	0	0		OSBPL3|p.S272L|1|0.29|ENSG00000070882|chr7:24863255-24863255|G/A|missense_variant	OSBPL3|p.S272L|1|0.29|ENSG00000070882|chr7:24863255-24863255|G/A|missense_variant	OSBPL3|p.S272L|1|0.29|ENSG00000070882|chr7:24863255-24863255|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	503.7052307128906	3	502.971148	1505.89161	-0.45541	-0.00022906	0.12332	6.2027E-05	-0.33209	-0.00016703	502.97094805962985	143.17	0.6588	143.2	142.79	143.45	0.030731					39	12	5	0	0	0	0.73902	1	56047	56047		0.08335	0.08335	1	4899800			43740	15098	32039	32295	42673	42673					0.15890465839152057
RLIAQRYLL	9	Unmodified	_RLIAQRYLL_					0	0	0		ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	383.3111572265625	3	382.576631	1144.70806	0.42564	0.00016284	0.044064	1.6858E-05	0.4697	0.0001797	382.57657502754375	62.712	0.66578	62.712	62.403	63.069	0					23	12	3	0	0	0	0.04093	1	22671	22671		67.838	41.817	1	3441200			43741	1168	32040	32296	42674	42674					0.14149679284946615
RLIAQRYLL	9	Unmodified	_RLIAQRYLL_					0	0	0		ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	382.9764709472656	3	382.576631	1144.70806	-0.42095	-0.00016105	-0.010082	-3.8573E-06	-0.43104	-0.0001649	382.5765732285372	61.634	0.50328	62.379	62.121	62.624	0.74503					23	9	3	0	0	0	0.021422	1	23355	23355		86.332	36.778	1	4392500			43742	1168	32040	32296	42675	42675					0.14149679284946615
RLIDAFKGV	9	Unmodified	_RLIDAFKGV_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-SECPEP	A375_MHC_IP_R1	1	510.205078125	2	509.805834	1017.59712	-0.66821	-0.00034066	0.19748	0.00010068	-0.47073	-0.00023998	509.80581945905715	66.729	0.71495	66.729	66.428	67.143	0					34	13	4	0	0	0	0.20059	1	24137	24137		51.415	27.395	1	7693700			43743	6778	32041	32297	42676	42676					0.08902039576844345
RLIDAFKGV	9	Unmodified	_RLIDAFKGV_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-SECPEP	A375_MHC_IP_R2	2	510.205078125	2	509.805834	1017.59712	-0.90814	-0.00046298	-0.018701	-9.5341E-06	-0.92684	-0.00047251	509.80578834414274	65.561	0.71245	66.299	66.018	66.731	0.73811					31	13	3	0	0	0	0.16595	1	24835	24835		32.037	20.397	1	9520600			43744	6778	32041	32297	42677	42677					0.08902039576844345
RLIDHLENT	9	Unmodified	_RLIDHLENT_					0	0	0		nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF	nc|ENSG00000213782|Q9H0S4-2|DDX47	nc|ENSG00000213782|Q9H0S4-2|DDX47	MULTI-SECPEP	A375_MHC_IP_R1	1	371.2681884765625	3	370.86825	1109.58292	0.35632	0.00013215	-0.19437	-7.2086E-05	0.16194	6.006E-05	370.86826816453083	37.667	0.61363	37.667	37.454	38.067	0					18	11	2	0	0	0	0.79713	1	12712	12712		3.8763	3.6405	1	5290300			43745	9582	32042	32298	42678	42678					0.03251342357884823
RLIDHLENT	9	Unmodified	_RLIDHLENT_					0	0	0		nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF	nc|ENSG00000213782|Q9H0S4-2|DDX47	nc|ENSG00000213782|Q9H0S4-2|DDX47	MULTI-SECPEP	A375_MHC_IP_R1	1	555.6769409179688	2	555.798737	1109.58292	-0.5088	-0.00028279	0.025764	1.432E-05	-0.48304	-0.00026847	555.798776694386	37.654	0.56118	37.654	37.351	37.913	0					22	10	3	0	0	0	0.29872	1	12714	12714		67.081	34.295	1	8443800			43746	9582	32042	32298	42679	42679					0.03251342357884823
RLIDHLENT	9	Unmodified	_RLIDHLENT_					0	0	0		nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF	nc|ENSG00000213782|Q9H0S4-2|DDX47	nc|ENSG00000213782|Q9H0S4-2|DDX47	MULTI-SECPEP	A375_MHC_IP_R2	2	371.2681579589844	3	370.86825	1109.58292	-0.11713	-4.3439E-05	-0.26075	-9.6705E-05	-0.37788	-0.00014014	370.8682333866783	36.7	0.45825	37.47	37.258	37.716	0.7709					15	8	2	0	0	0	0.73926	1	13408	13408		5.7834	3.2849	1	4053600			43747	9582	32042	32298	42680	42680					0.03251342357884823
RLIDHLENT	9	Unmodified	_RLIDHLENT_					0	0	0		nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF	nc|ENSG00000213782|Q9H0S4-2|DDX47	nc|ENSG00000213782|Q9H0S4-2|DDX47	MULTI-SECPEP	A375_MHC_IP_R2	2	556.1981201171875	2	555.798737	1109.58292	-1.2568	-0.00069851	0.56462	0.00031381	-0.69215	-0.00038469	555.7990126144512	36.716	0.45825	37.487	37.258	37.716	0.7709					19	8	3	0	0	0	0.077417	1	13406	13406		74.772	44.135	1	9187000			43748	9582	32042	32298	42681	42681					0.03251342357884823
RLIDHLHNC	9	Unmodified	_RLIDHLHNC_					0	0	0		DDX27|p.K691Rfs*4|1|0.39|ENSG00000124228|chr20:49241967-49241967|A/-|frameshift_variant;ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF	DDX27|p.K691Rfs*4|1|0.39|ENSG00000124228|chr20:49241967-49241967|A/-|frameshift_variant	DDX27|p.K691Rfs*4|1|0.39|ENSG00000124228|chr20:49241967-49241967|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	373.972900390625	3	374.194192	1119.56075	-0.11798	-4.4149E-05	0.077637	2.9051E-05	-0.040348	-1.5098E-05	374.19415816525037	28.459	0.2035	29.138	29.01	29.214	0.67857					5	3	2	0	0	0	0.72623	1	9829	9829		6.6235	0.43161	1	4300100			43749	725	32043	32299	42682	42682					0.0057483940847760095
RLIDHLHNC	9	Unmodified	_RLIDHLHNC_					0	0	0		DDX27|p.K691Rfs*4|1|0.39|ENSG00000124228|chr20:49241967-49241967|A/-|frameshift_variant;ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF	DDX27|p.K691Rfs*4|1|0.39|ENSG00000124228|chr20:49241967-49241967|A/-|frameshift_variant	DDX27|p.K691Rfs*4|1|0.39|ENSG00000124228|chr20:49241967-49241967|A/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	374.194192	1119.56075	-0.13434	-5.0268E-05	0.60199	0.00022526	0.46766	0.00017499	374.194372463886	29.378	0.20186	29.378	29.201	29.403	0	0.12001	0.00042621	NaN	6.6235	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5645900			43750	725	32043	32299							0.0057483940847760095
RLIDLGVGL	9	Unmodified	_RLIDLGVGL_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	MULTI-MSMS	A375_MHC_IP_R2	2	478.70025634765625	2	478.300384	954.586216	-0.53718	-0.00025693	0.24663	0.00011796	-0.29055	-0.00013897	478.3004730047005	102.33	2.1361	103.09	102.36	104.5	0.76428					85	41	4	0	0	0	0.19747	1	38851	38851		38.176	0.024387	1	30577000			43751	3458	32044	32300	42683	42683					0.10710637202555517
RLIDLHTNV	9	Unmodified	_RLIDLHTNV_					0	0	0		ENST00000555953.1_1_14:31142550-31144373:+|nuORF;ENST00000555259.5_1_14:31112578-31185169:+|nuORF;nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENSG00000092108|ENST00000458591|SCFD1	ENST00000555953.1_1_14:31142550-31144373:+|nuORF	ENST00000555953.1_1_14:31142550-31144373:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	541.21142578125	2	540.811648	1079.60874	-0.48098	-0.00026012	0.028257	1.5281E-05	-0.45272	-0.00024484	540.811615023422	51.5	0.40584	51.5	51.322	51.728	0					19	7	3	0	0	0	0.59614	1	18341	18341		17.443	0	1	10537000			43752	1995	32045	32301	42684	42684					0.07212236600162214
RLIDLHTNV	9	Unmodified	_RLIDLHTNV_					0	0	0		ENST00000555953.1_1_14:31142550-31144373:+|nuORF;ENST00000555259.5_1_14:31112578-31185169:+|nuORF;nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENSG00000092108|ENST00000458591|SCFD1	ENST00000555953.1_1_14:31142550-31144373:+|nuORF	ENST00000555953.1_1_14:31142550-31144373:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	361.2767028808594	3	360.876857	1079.60874	-0.32654	-0.00011784	0.16382	5.9119E-05	-0.16272	-5.8723E-05	360.87688729127075	50.604	0.45546	51.358	51.057	51.513	0.75406					16	8	3	0	0	0	0.21241	1	19029	19029		37.075	20.926	1	2806800			43753	1995	32045	32301	42685	42685					0.07212236600162214
RLIDLHTNV	9	Unmodified	_RLIDLHTNV_					0	0	0		ENST00000555953.1_1_14:31142550-31144373:+|nuORF;ENST00000555259.5_1_14:31112578-31185169:+|nuORF;nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENSG00000092108|ENST00000458591|SCFD1	ENST00000555953.1_1_14:31142550-31144373:+|nuORF	ENST00000555953.1_1_14:31142550-31144373:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	540.6734619140625	2	540.811648	1079.60874	-0.97236	-0.00052587	0.3734	0.00020194	-0.59897	-0.00032393	540.8118221423279	50.614	0.60916	51.368	50.955	51.564	0.75406					24	11	3	0	0	0	0.46121	1	19009	19009		38.615	12.347	1	8479100			43754	1995	32045	32301	42686	42686					0.07212236600162214
RLIDPQTQV	9	Unmodified	_RLIDPQTQV_					0	0	0		ENST00000547809.5_1_12:105570964-105626916:-|nuORF;nc|ENSG00000136044|Q8NEU8-2|APPL2;ENSG00000136044|ENST00000258530|APPL2;nc|ENSG00000136044|Q8NEU8-3|APPL2	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	535.7032470703125	2	535.303655	1068.59276	-0.52888	-0.00028311	-0.46796	-0.0002505	-0.99684	-0.00053361	535.3032256818557	45.756	0.55912	45.756	45.484	46.043	0					28	10	3	0	0	0	0.33896	1	16007	16007		27.223	18.478	1	6859700			43755	4745	32046	32302	42687	42687					0.061205303632732466
RLIDPQTQV	9	Unmodified	_RLIDPQTQV_					0	0	0		ENST00000547809.5_1_12:105570964-105626916:-|nuORF;nc|ENSG00000136044|Q8NEU8-2|APPL2;ENSG00000136044|ENST00000258530|APPL2;nc|ENSG00000136044|Q8NEU8-3|APPL2	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	535.7030639648438	2	535.303655	1068.59276	-0.94933	-0.00050818	-0.25096	-0.00013434	-1.2003	-0.00064252	535.303395735323	44.91	0.56122	45.679	45.39	45.951	0.76909					26	10	3	0	0	0	0.20059	1	16756	16756		51.415	20.779	1	8653300			43756	4745	32046	32302	42688	42688					0.061205303632732466
RLIEESVTV	9	Unmodified	_RLIEESVTV_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-SECPEP	A375_MHC_IP_R1	1	523.213134765625	2	523.298039	1044.58152	-0.37426	-0.00019585	-0.28893	-0.0001512	-0.66319	-0.00034705	523.2979030361465	56.258	0.96352	56.258	55.891	56.855	0					49	18	4	0	0	0	0.20451	1	20144	20144		49.554	14.622	1	22860000			43757	1108	32047	32303	42689	42689					0.061017082691250835
RLIEESVTV	9	Unmodified	_RLIEESVTV_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	A375_MHC_IP_R2	2	523.6976318359375	2	523.298039	1044.58152	-0.63987	-0.00033484	-0.45235	-0.00023672	-1.0922	-0.00057156	523.2978606454228	55.403	0.81258	56.154	55.83	56.642	0.75075					47	15	4	0	0	0	0.10622	1	20894	20894		49.554	5.696	1	24551000			43758	1108	32047	32303	42690	42690					0.061017082691250835
RLIEETISI	9	Unmodified	_RLIEETISI_					0	0	0		nc|ENSG00000108587|O95249-2|GOSR1;ENSG00000108587|ENST00000451249|GOSR1;nc|ENSG00000108587|O95249|GOSR1;ENST00000427274.6_1_17:28822526-28847071:+|nuORF	nc|ENSG00000108587|O95249-2|GOSR1	nc|ENSG00000108587|O95249-2|GOSR1	MULTI-SECPEP	A375_MHC_IP_R1	1	537.7131958007812	2	537.313689	1072.61282	-0.59814	-0.00032139	-0.243	-0.00013057	-0.84114	-0.00045196	537.3136629527231	79.326	0.66473	79.326	78.96	79.625	0					22	12	3	0	0	0	0.38134	1	28944	28944		57.722	6.0922	1	3165100			43759	2818	32048	32304	42691	42691					0.07942281303257914
RLIEETQIFQM	11	Unmodified	_RLIEETQIFQM_					0	0	0		ENST00000577772.5_1_18:66504000-66564823:+|nuORF;nc|ENSG00000150636|Q68D86-2|CCDC102B;ENSG00000150636|ENST00000360242|CCDC102B	ENST00000577772.5_1_18:66504000-66564823:+|nuORF	ENST00000577772.5_1_18:66504000-66564823:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	704.7681884765625	2	704.368669	1406.72279	-0.57007	-0.00040154	-0.46051	-0.00032437	-1.0306	-0.00072591	704.3680991841796	98.553	0.40864	98.553	98.25	98.659	0					11	7	2	0	0	0	0.68694	1	36228	36228		16.566	2.951	1	1208100			43760	5855	32049	32305	42692	42692					0.035693385801096156
RLIEETQIFQM	11	Unmodified	_RLIEETQIFQM_					0	0	0		ENST00000577772.5_1_18:66504000-66564823:+|nuORF;nc|ENSG00000150636|Q68D86-2|CCDC102B;ENSG00000150636|ENST00000360242|CCDC102B	ENST00000577772.5_1_18:66504000-66564823:+|nuORF	ENST00000577772.5_1_18:66504000-66564823:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	704.7689208984375	2	704.368669	1406.72279	-0.8402	-0.00059181	0.91396	0.00064376	0.073762	5.1956E-05	704.8710277913167	97.628	0.35492	98.384	98.128	98.483	0.75586					8	6	2	0	0	0	0.43294	1	37072	37072		36.395	18.952	1	1559900			43761	5855	32049	32305	42693	42693					0.035693385801096156
RLIEGKLKAA	10	Unmodified	_RLIEGKLKAA_					0	0	0		nc|ENSG00000213213|Q5T5S1-2|CCDC183;ENSG00000213213|ENST00000338005|CCDC183;ENST00000484858.1_1_9:139701238-139702139:+|nuORF;ENST00000481601.5_1_9:139700881-139702139:+|nuORF	nc|ENSG00000213213|Q5T5S1-2|CCDC183	nc|ENSG00000213213|Q5T5S1-2|CCDC183	MULTI-MSMS	A375_MHC_IP_R1	1	367.6171875	3	366.904636	1097.69208	0.12506	4.5883E-05	0.47058	0.00017266	0.59564	0.00021854	366.9047525074822	24.523	0.35183	24.523	24.397	24.749	0					14	6	3	0	0	0	0.25644	2	6969	6969;7016		43.477	27.202	1	8063800			43762	9558	32050	32306	42694;42695	42694					0.14713973048060325
RLIEGKLKAA	10	Unmodified	_RLIEGKLKAA_					0	0	0		nc|ENSG00000213213|Q5T5S1-2|CCDC183;ENSG00000213213|ENST00000338005|CCDC183;ENST00000484858.1_1_9:139701238-139702139:+|nuORF;ENST00000481601.5_1_9:139700881-139702139:+|nuORF	nc|ENSG00000213213|Q5T5S1-2|CCDC183	nc|ENSG00000213213|Q5T5S1-2|CCDC183	MULTI-MSMS	A375_MHC_IP_R2	2	367.30450439453125	3	366.904636	1097.69208	-0.13013	-4.7744E-05	-0.3919	-0.00014379	-0.52203	-0.00019153	366.90448444566823	23.779	0.35721	24.41	24.283	24.64	0.63014					8	6	2	0	0	0	0.24931	1	7736	7736		44.207	31.351	1	5572800			43763	9558	32050	32306	42696	42696					0.14713973048060325
RLIESLFTI	9	Unmodified	_RLIESLFTI_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;GTF3C1|p.S767Vfs*7|1|0.47|ENSG00000077235|chr16:27497688-27497688|T/-|frameshift_variant	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	A375_MHC_IP_R1	1	546.72705078125	2	546.326599	1090.63865	-0.76913	-0.0004202	0.94013	0.00051362	0.171	9.3423E-05	546.3271429395446	120.53	0.55429	120.53	120.3	120.85	0					18	10	2	0	0	0	0.042871	1	44627	44627		82.529	0	1	75248000			43764	1649	32051	32307	42697	42697					0.09695175545539314
RLIESLFTI	9	Unmodified	_RLIESLFTI_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;GTF3C1|p.S767Vfs*7|1|0.47|ENSG00000077235|chr16:27497688-27497688|T/-|frameshift_variant	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	A375_MHC_IP_R2	2	546.7262573242188	2	546.326599	1090.63865	-0.73502	-0.00040156	0.49703	0.00027154	-0.238	-0.00013002	546.3267172673798	119.4	0.91715	119.93	119.63	120.55	0.5321					36	17	3	0	0	0	0.085252	1	45453	45453		66.457	1.2217	1	54004000			43765	1649	32051	32307	42698	42698					0.09695175545539314
RLIESLFTIQ	10	Unmodified	_RLIESLFTIQ_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;GTF3C1|p.S767Vfs*7|1|0.47|ENSG00000077235|chr16:27497688-27497688|T/-|frameshift_variant	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	A375_MHC_IP_R1	1	610.756103515625	2	610.355888	1218.69722	-0.14449	-8.819E-05	0.33059	0.00020178	0.1861	0.00011359	610.3556742055358	109.96	0.40584	109.96	109.73	110.14	0					13	7	3	0	0	0	0.45806	1	40335	40335		30.703	0.86286	1	1811600			43766	1649	32052	32308	42699	42699					0.09662232120012959
RLIHLRLKLQ	10	Unmodified	_RLIHLRLKLQ_					0	0	0		nc|ENSG00000140995|Q6ZN54-2|DEF8;nc|ENSG00000140995|Q6ZN54-4|DEF8;nc|ENSG00000140995|Q6ZN54-6|DEF8;nc|ENSG00000140995|Q6ZN54-3|DEF8;ENSG00000140995|ENST00000563594|DEF8;nc|ENSG00000140995|Q6ZN54|DEF8	nc|ENSG00000140995|Q6ZN54-2|DEF8	nc|ENSG00000140995|Q6ZN54-2|DEF8	MSMS	A375_MHC_IP_R1	1	645.388671875	2	645.430056	1288.84556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.978	1	91.978	91.478	92.478	0								0	0	0	0.15531	1	33799	33799		3.5965	1.9439	1				43767	5205	32053	32309	42700	42700					0.21269007884347957
RLIKALSRYIR	11	Unmodified	_RLIKALSRYIR_					0	0	0			REV__ENSG00000154007|ENST00000284142|ASB17	REV__ENSG00000154007|ENST00000284142|ASB17	MSMS	A375_MHC_IP_R2	2	694.8394165039062	2	694.94607	1387.87759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.46	1	144.49	143.99	144.99	0.024414								0	0	0	0.16337	1	56429	56429		1.1933	0	1		+		43768	19861	32054	32310	42701	42701					0.19916375567481737
RLIKSFEKV	9	Unmodified	_RLIKSFEKV_					0	0	0		ENSG00000133131|ENST00000355610|MORC4;nc|ENSG00000133131|Q8TE76-3|MORC4;nc|ENSG00000133131|Q8TE76-2|MORC4	ENSG00000133131|ENST00000355610|MORC4	ENSG00000133131|ENST00000355610|MORC4	MULTI-MSMS	A375_MHC_IP_R2	2	374.3009033203125	3	373.901003	1118.68118	0.33646	0.0001258	-0.42417	-0.0001586	-0.087706	-3.2793E-05	373.9008188406136	30.968	0.55905	31.686	31.467	32.026	0.71857					20	10	4	0	0	0	0.11176	1	10937	10937		48.561	12.166	1	5831200			43769	4491	32055	32311	42702	42702					0.1265857067376146
RLINQVLEL	9	Unmodified	_RLINQVLEL_					0	0	0		ENSG00000153130|ENST00000608372|SCOC;nc|ENSG00000153130|Q9UIL1-3|SCOC;nc|ENSG00000153130|Q9UIL1-2|SCOC;nc|ENSG00000153130|Q9UIL1|SCOC	ENSG00000153130|ENST00000608372|SCOC	ENSG00000153130|ENST00000608372|SCOC	MULTI-MSMS	A375_MHC_IP_R1	1	549.7378540039062	2	549.337498	1096.66044	-0.58085	-0.00031908	0.16533	9.0821E-05	-0.41552	-0.00022826	549.3374530556945	95.811	0.85952	95.811	95.465	96.325	0					29	16	3	0	0	0	0.064406	1	35181	35181		58.679	10.93	1	5181100			43770	6008	32056	32312	42703	42703					0.1159798029407284
RLINQVLEL	9	Unmodified	_RLINQVLEL_					0	0	0		ENSG00000153130|ENST00000608372|SCOC;nc|ENSG00000153130|Q9UIL1-3|SCOC;nc|ENSG00000153130|Q9UIL1-2|SCOC;nc|ENSG00000153130|Q9UIL1|SCOC	ENSG00000153130|ENST00000608372|SCOC	ENSG00000153130|ENST00000608372|SCOC	MULTI-MSMS	A375_MHC_IP_R2	2	549.7372436523438	2	549.337498	1096.66044	-0.53412	-0.00029341	-0.13972	-7.6754E-05	-0.67384	-0.00037017	549.3374930658815	94.744	0.60593	95.488	95.173	95.779	0.74473					25	11	3	0	0	0	0.040308	1	35987	35987		68.081	11.904	1	5265600			43771	6008	32056	32312	42704	42704					0.1159798029407284
RLIPERTVW	9	Unmodified	_RLIPERTVW_					0	0	0		ENSG00000151414|ENST00000367385|NEK7;ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	ENSG00000151414|ENST00000367385|NEK7	ENSG00000151414|ENST00000367385|NEK7	MULTI-MSMS	A375_MHC_IP_R1	1	390.9648132324219	3	390.564502	1168.67168	0.081648	3.1889E-05	0.23993	9.3709E-05	0.32158	0.0001256	390.5645608803697	58.684	0.55948	58.684	58.379	58.938	0					16	10	2	0	0	0	0.15441	1	21069	21069		41.347	27.732	1	2690500			43772	5904	32057	32313	42705	42705					0.09408802388225013
RLIPERTVW	9	Unmodified	_RLIPERTVW_					0	0	0		ENSG00000151414|ENST00000367385|NEK7;ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	ENSG00000151414|ENST00000367385|NEK7	ENSG00000151414|ENST00000367385|NEK7	MULTI-SECPEP	A375_MHC_IP_R1	1	585.7434692382812	2	585.343115	1168.67168	-0.33446	-0.00019578	0.27031	0.00015822	-0.06416	-3.7555E-05	585.34326248331	58.673	0.50828	58.673	58.43	58.938	0					19	9	3	0	0	0	0.53098	1	21067	21067		33.445	8.4539	1	4880200			43773	5904	32057	32313	42706	42706					0.09408802388225013
RLIPERTVW	9	Unmodified	_RLIPERTVW_					0	0	0		ENSG00000151414|ENST00000367385|NEK7;ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	ENSG00000151414|ENST00000367385|NEK7	ENSG00000151414|ENST00000367385|NEK7	MULTI-MSMS	A375_MHC_IP_R2	2	390.9645080566406	3	390.564502	1168.67168	-0.48403	-0.00018904	0.28598	0.0001117	-0.19804	-7.7349E-05	390.56461356260036	57.649	0.40739	58.398	58.17	58.578	0.74894					16	7	3	0	0	0	0.053667	1	21790	21790		62.869	39.068	1	6695400			43774	5904	32057	32313	42707	42707					0.09408802388225013
RLIPERTVW	9	Unmodified	_RLIPERTVW_					0	0	0		ENSG00000151414|ENST00000367385|NEK7;ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	ENSG00000151414|ENST00000367385|NEK7	ENSG00000151414|ENST00000367385|NEK7	MULTI-SECPEP	A375_MHC_IP_R2	2	585.74267578125	2	585.343115	1168.67168	-0.80945	-0.0004738	0.20463	0.00011978	-0.60482	-0.00035403	585.3430577708663	57.652	0.40739	58.401	58.17	58.578	0.74894					17	7	3	0	0	0	0.41731	1	21788	21788		42.312	21.859	1	7495100			43775	5904	32057	32313	42708	42708					0.09408802388225013
RLIPNAIQV	9	Unmodified	_RLIPNAIQV_					0	0	0		ENSG00000023171|ENST00000635736|GRAMD1B;nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF	ENSG00000023171|ENST00000635736|GRAMD1B	ENSG00000023171|ENST00000635736|GRAMD1B	MULTI-MSMS	A375_MHC_IP_R2	2	512.7186889648438	2	512.319109	1022.62366	-0.78999	-0.00040473	-0.18186	-9.3168E-05	-0.97185	-0.0004979	512.3190171301272	75.28	0.60817	76.019	75.672	76.281	0.73869					19	11	2	0	0	0	0.2002	1	28548	28548		37.974	9.4872	1	5839500			43776	1072	32058	32314	42709	42709					0.11325728468170837
RLIPTLVSI	9	Unmodified	_RLIPTLVSI_					0	0	0		ENSG00000198700|ENST00000361565|IPO9;IPO9|p.K900*|1|0.24|ENSG00000198700|chr1:201872947-201872948|-/T|frameshift_variant	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-MSMS	A375_MHC_IP_R1	1	507.23211669921875	2	506.331685	1010.64882	-0.18648	-9.442E-05	-0.33126	-0.00016773	-0.51774	-0.00026215	506.3315451187054	106.6	0.71547	106.6	106.32	107.03	0					26	13	3	0	0	0	0.094655	1	39122	39122		51.63	19.324	1	7405600			43777	9302	32059	32315	42710	42710					0.14391783270752967
RLIPTLVSI	9	Unmodified	_RLIPTLVSI_					0	0	0		ENSG00000198700|ENST00000361565|IPO9;IPO9|p.K900*|1|0.24|ENSG00000198700|chr1:201872947-201872948|-/T|frameshift_variant	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-SECPEP	A375_MHC_IP_R2	2	506.731201171875	2	506.331685	1010.64882	-0.713	-0.00036101	-0.083712	-4.2386E-05	-0.79671	-0.0004034	506.33169555629564	105.54	0.66245	106.3	105.97	106.63	0.75977					26	12	3	0	0	0	0.16764	1	39899	39899		60.074	29.437	1	5907000			43778	9302	32059	32315	42711	42711					0.14391783270752967
RLIQESPTL	9	Unmodified	_RLIQESPTL_					0	0	0		ENST00000535479.5_1_12:7086310-7087113:-|nuORF;nc|ENSG00000111684|Q6P1A2-2|LPCAT3;ENSG00000111684|ENST00000261407|LPCAT3	ENST00000535479.5_1_12:7086310-7087113:-|nuORF	ENST00000535479.5_1_12:7086310-7087113:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	529.2059326171875	2	528.806031	1055.59751	-0.36586	-0.00019347	0.065078	3.4414E-05	-0.30078	-0.00015905	528.8060250116354	53.887	1.3177	53.887	53.555	54.873	0					57	25	4	0	0	0	0.061442	1	19176	19176		82.529	19.957	1	43639000			43779	3018	32060	32316	42712	42712					0.07193414506036788
RLIQESPTL	9	Unmodified	_RLIQESPTL_					0	0	0		ENST00000535479.5_1_12:7086310-7087113:-|nuORF;nc|ENSG00000111684|Q6P1A2-2|LPCAT3;ENSG00000111684|ENST00000261407|LPCAT3	ENST00000535479.5_1_12:7086310-7087113:-|nuORF	ENST00000535479.5_1_12:7086310-7087113:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	529.20556640625	2	528.806031	1055.59751	-1.0879	-0.00057531	-0.19289	-0.000102	-1.2808	-0.00067732	528.8058729077361	53.008	1.5312	53.759	53.436	54.967	0.75105					63	29	4	0	0	0	0.087712	1	19932	19932		75.761	18.039	1	45580000			43780	3018	32060	32316	42713	42713					0.07193414506036788
RLIRAVRPR	9	Unmodified	_RLIRAVRPR_					0	0	0		ENST00000578849.1_1_17:8192409-8192553:+|nuORF	ENST00000578849.1_1_17:8192409-8192553:+|nuORF	ENST00000578849.1_1_17:8192409-8192553:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	378.98529052734375	3	379.587753	1135.74143	0.89958	0.00034147	0.54717	0.0002077	1.4467	0.00054917	379.58803976825	44.822	0.25197	44.822	44.626	44.878	0					6	4	2	0	0	0	0.775	1	15622	15622		7.1017	0	1	1464300			43781	13660	32061	32317	42714	42714					0.17898725847499009
RLIRIFILTNS	11	Unmodified	_RLIRIFILTNS_					0	0	0			REV__ENSG00000270765|ENST00000604641|GAS2L2	REV__ENSG00000270765|ENST00000604641|GAS2L2	MULTI-SECPEP	A375_MHC_IP_R2	2	449.1632995605469	3	449.281995	1344.82415	-0.45259	-0.00020334	-0.078342	-3.5198E-05	-0.53093	-0.00023854	449.2816483318661	51.188	0.30538	51.94	51.813	52.118	0.75225					6	5	2	0	0	0	0.99819	1	19224	19224		5.8681	0	1	782570	+		43782	22942	32062	32318	42715	42715					0.1655357806498614
RLISGLPSL	9	Unmodified	_RLISGLPSL_					0	0	0		nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF;ENSG00000111300|ENST00000261745|NAA25	nc|ENSG00000111300|Q14CX7-2|NAA25	nc|ENSG00000111300|Q14CX7-2|NAA25	MULTI-MSMS	A375_MHC_IP_R1	1	478.7002258300781	2	478.300384	954.586216	-0.44598	-0.00021331	0.51549	0.00024656	0.069507	3.3245E-05	478.30050387365134	89.367	0.70982	89.367	89.12	89.83	0					22	13	3	0	0	0	0.27064	1	32849	32849		32.786	0.4802	1	1699700			43783	2982	32063	32319	42716	42716					0.10710637202578255
RLISGLPSL	9	Unmodified	_RLISGLPSL_					0	0	0		nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF;ENSG00000111300|ENST00000261745|NAA25	nc|ENSG00000111300|Q14CX7-2|NAA25	nc|ENSG00000111300|Q14CX7-2|NAA25	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	478.300384	954.586216	-0.48087	-0.00023	0.14795	7.0766E-05	-0.33292	-0.00015924	478.300381739921	88.371	0.55584	89.103	88.825	89.381	0.7318	-0.13176	-0.00018059	NaN	32.786	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2290800			43784	2982	32063	32319							0.10710637202578255
RLISKFDTV	9	Unmodified	_RLISKFDTV_					0	0	0		ENSG00000151247|ENST00000450253|EIF4E;nc|ENSG00000151247|P06730-3|EIF4E;nc|ENSG00000151247|P06730-2|EIF4E;ENST00000528228.1_1_8:14166702-14167074:+|nuORF;ENST00000507665.5_1_4:99808220-99850263:-|nuORF	ENSG00000151247|ENST00000450253|EIF4E	ENSG00000151247|ENST00000450253|EIF4E	MULTI-MSMS	A375_MHC_IP_R1	1	360.6134338378906	3	360.213358	1077.61824	0.32726	0.00011788	-0.257	-9.2574E-05	0.070261	2.5309E-05	360.21320374091175	45.662	0.55654	45.662	45.384	45.941	0					23	10	3	0	0	0	0.6421	1	16017	16017		12.175	4.0192	1	4395600			43785	5891	32064	32320	42717	42717					0.0825400488570267
RLISKFDTV	9	Unmodified	_RLISKFDTV_					0	0	0		ENSG00000151247|ENST00000450253|EIF4E;nc|ENSG00000151247|P06730-3|EIF4E;nc|ENSG00000151247|P06730-2|EIF4E;ENST00000528228.1_1_8:14166702-14167074:+|nuORF;ENST00000507665.5_1_4:99808220-99850263:-|nuORF	ENSG00000151247|ENST00000450253|EIF4E	ENSG00000151247|ENST00000450253|EIF4E	MULTI-SECPEP	A375_MHC_IP_R1	1	539.675537109375	2	539.816399	1077.61824	-0.44362	-0.00023948	-0.15266	-8.2411E-05	-0.59629	-0.00032189	539.8162997516639	45.641	0.55654	45.641	45.384	45.941	0					23	10	3	0	0	0	0.39266	1	16001	16001		57.249	29.62	1	5535300			43786	5891	32064	32320	42718	42718					0.0825400488570267
RLISKFDTV	9	Unmodified	_RLISKFDTV_					0	0	0		ENSG00000151247|ENST00000450253|EIF4E;nc|ENSG00000151247|P06730-3|EIF4E;nc|ENSG00000151247|P06730-2|EIF4E;ENST00000528228.1_1_8:14166702-14167074:+|nuORF;ENST00000507665.5_1_4:99808220-99850263:-|nuORF	ENSG00000151247|ENST00000450253|EIF4E	ENSG00000151247|ENST00000450253|EIF4E	MULTI-MSMS	A375_MHC_IP_R2	2	360.94757080078125	3	360.213358	1077.61824	-0.29729	-0.00010709	-0.080452	-2.898E-05	-0.37775	-0.00013607	360.2132441589502	44.626	0.56129	45.395	45.188	45.75	0.76909					19	10	3	0	0	0	0.085252	1	16664	16664		53.317	32.736	1	3329700			43787	5891	32064	32320	42719	42719					0.0825400488570267
RLISKFDTV	9	Unmodified	_RLISKFDTV_					0	0	0		ENSG00000151247|ENST00000450253|EIF4E;nc|ENSG00000151247|P06730-3|EIF4E;nc|ENSG00000151247|P06730-2|EIF4E;ENST00000528228.1_1_8:14166702-14167074:+|nuORF;ENST00000507665.5_1_4:99808220-99850263:-|nuORF	ENSG00000151247|ENST00000450253|EIF4E	ENSG00000151247|ENST00000450253|EIF4E	MULTI-SECPEP	A375_MHC_IP_R2	2	540.2158203125	2	539.816399	1077.61824	-0.94295	-0.00050902	-0.068874	-3.7179E-05	-1.0118	-0.0005462	539.8163729554004	44.603	0.45646	45.372	45.138	45.594	0.7691					21	8	3	0	0	0	0.34544	1	16655	16655		53.404	25.775	1	5196900			43788	5891	32064	32320	42720	42720					0.0825400488570267
RLKAKEEEWRE	11	Unmodified	_RLKAKEEEWRE_					0	0	0		nc|ENSG00000127511|O75182|SIN3B;ENSG00000127511|ENST00000248054|SIN3B	nc|ENSG00000127511|O75182|SIN3B	nc|ENSG00000127511|O75182|SIN3B	MULTI-SECPEP	A375_MHC_IP_R1	1	369.9365234375	4	369.20067	1472.77358	0.74334	0.00027444	-0.30818	-0.00011378	0.43516	0.00016066	369.2005613180961	48.798	0.70825	48.798	48.325	49.033	0					24	13	3	0	0	0	0.99916	1	17319	17319		2.4348	0.18206	1	4944200			43789	4094	32065	32321	42721	42721					0.05610003949277598
RLKAKEEEWRE	11	Unmodified	_RLKAKEEEWRE_					0	0	0		nc|ENSG00000127511|O75182|SIN3B;ENSG00000127511|ENST00000248054|SIN3B	nc|ENSG00000127511|O75182|SIN3B	nc|ENSG00000127511|O75182|SIN3B	MULTI-MATCH	A375_MHC_IP_R2	2		4	369.20067	1472.77358	0.38392	0.00014174	-0.52139	-0.0001925	-0.13746	-5.0752E-05	369.20041805539825	47.884	0.50631	48.645	48.326	48.833	0.76127	-0.076468	-0.00016126	NaN	2.4348	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5086000			43790	4094	32065	32321							0.05610003949277598
RLKCIEKYC	9	Unmodified	_RLKCIEKYC_					0	0	0			REV__ENST00000513565.6_1_5:122725952-122726051:-|nuORF	REV__ENST00000513565.6_1_5:122725952-122726051:-|nuORF	MSMS	A375_MHC_IP_R2	2	385.61309814453125	3	385.87195	1154.59402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.8	1	54.551	54.051	55.051	0.75105								0	0	0	0.15486	1	20315	20315		4.1895	1.9067	1		+		43791	25642	32066	32322	42722	42722					0.022907051361698905
RLKCLRRYRQR	11	Unmodified	_RLKCLRRYRQR_					0	0	0		ENSG00000139620|ENST00000420613|KANSL2	ENSG00000139620|ENST00000420613|KANSL2	ENSG00000139620|ENST00000420613|KANSL2	MSMS	A375_MHC_IP_R1	1	516.6346435546875	3	516.644044	1546.9103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.35	1	142.35	141.85	142.85	0								0	0	0	0.16358	1	54622	54622		0.08335	0	1				43792	5091	32067	32323	42723	42723					0.15872259418688373
RLKCLRRYRQR	11	Unmodified	_RLKCLRRYRQR_					0	0	0		ENSG00000139620|ENST00000420613|KANSL2	ENSG00000139620|ENST00000420613|KANSL2	ENSG00000139620|ENST00000420613|KANSL2	MULTI-SECPEP	A375_MHC_IP_R2	2	516.1866455078125	3	516.644044	1546.9103	-0.57897	-0.00029912	0.10094	5.2151E-05	-0.47803	-0.00024697	516.6440472041309	137.28	0.71756	137.37	136.99	137.71	0.083969					18	13	2	0	0	0	1.0015	1	53785	53785		0.094841	0.094841	1	802190			43793	5091	32067	32323	42724	42724					0.15872259418688373
RLKERSRRQK	10	Unmodified	_RLKERSRRQK_					0	0	0			REV__nc|ENSG00000165810|Q6UXG8-2|BTNL9	REV__nc|ENSG00000165810|Q6UXG8-2|BTNL9	MULTI-SECPEP	A375_MHC_IP_R2	2	452.3326416015625	3	452.948009	1355.8222	-0.063538	-2.8779E-05	0.83967	0.00038033	0.77614	0.00035155	452.9483056881107	137.08	1.4828	137.19	136.81	138.29	0.11134					62	28	4	0	0	0	0.95063	1	53685	53685		0.13989	0	1	15371000	+		43794	20625	32068	32324	42725	42725					0.15851962099736738
RLKFYRKKWRQ	11	Unmodified	_RLKFYRKKWRQ_					0	0	0			REV__nc|ENSG00000102780|Q86XP1-2|DGKH	REV__nc|ENSG00000102780|Q86XP1-2|DGKH	MSMS	A375_MHC_IP_R2	2	805.1497802734375	2	804.983518	1607.95248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.4	1	111.14	110.64	111.64	0.73692								0	0	0	0.1636	1	41645	41645		0	0	1		+		43795	17231	32069	32325	42726	42726					0.17282558098713707
RLKGQIPEI	9	Unmodified	_RLKGQIPEI_					0	0	0		nc|ENSG00000155959|P61758-2|VBP1;ENSG00000155959|ENST00000286428|VBP1	nc|ENSG00000155959|P61758-2|VBP1	nc|ENSG00000155959|P61758-2|VBP1	MULTI-MSMS	A375_MHC_IP_R1	1	527.7239990234375	2	527.324391	1052.63423	-0.64897	-0.00034222	0.11476	6.0514E-05	-0.53422	-0.00028171	527.324461662076	41.854	0.45996	41.854	41.622	42.082	0					11	8	2	0	0	0	0.52905	1	14510	14510		13.906	1.3745	1	1911000			43796	6166	32070	32326	42727	42727					0.11001711122594315
RLKHEHIERRR	11	Unmodified	_RLKHEHIERRR_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-MSMS	A375_MHC_IP_R2	2	765.8469848632812	2	765.447831	1528.88111	-0.72499	-0.00055494	0.30946	0.00023688	-0.41552	-0.00031806	765.4474784344442	148.6	1.2807	148.61	147.88	149.16	0.018692					64	31	3	0	0	0	0.73896	1	57688	57688		1.0715	0.76443	1	238940			43797	6391	32071	32327	42728	42728					0.13782438394036944
RLKIFTIG	8	Unmodified	_RLKIFTIG_					0	0	0		tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1	tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1	tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1	MSMS	A375_MHC_IP_R2	2	474.335205078125	2	474.30547	946.596387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.2	1	132.39	131.89	132.89	0.18953								0	0	0	0.16876	1	52005	52005		2.5775	0	1				43798	29935	32072	32328	42729	42729					0.1209524492780929
RLKIIIILKR	10	Unmodified	_RLKIIIILKR_					0	0	0		ENST00000468148.5_1_6:57086941-57087007:-|nuORF	ENST00000468148.5_1_6:57086941-57087007:-|nuORF	ENST00000468148.5_1_6:57086941-57087007:-|nuORF	MSMS	A375_MHC_IP_R2	2	633.4852905273438	2	633.460825	1264.9071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.73	1	106.49	105.99	106.99	0.75977								0	0	0	0.15642	1	39982	39982		0	0	1				43799	12297	32073	32329	42730	42730					0.28523939583647007
RLKIIIILKR	10	Unmodified	_RLKIIIILKR_					0	0	0		ENST00000468148.5_1_6:57086941-57087007:-|nuORF	ENST00000468148.5_1_6:57086941-57087007:-|nuORF	ENST00000468148.5_1_6:57086941-57087007:-|nuORF	MSMS	A375_MHC_IP_R2	2	633.4592895507812	2	633.460825	1264.9071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.24	1	125.54	125.04	126.04	0.2951								0	0	0	0.15642	1	48751	48751		0	0	1				43800	12297	32073	32329	42731	42731					0.28523939583647007
RLKKLIVHL	9	Unmodified	_RLKKLIVHL_					0	0	0			REV__CEP55|p.E383K|1|0.2|ENSG00000138180|chr10:93519763-93519763|G/A|missense_variant	REV__CEP55|p.E383K|1|0.2|ENSG00000138180|chr10:93519763-93519763|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	560.4072875976562	2	560.389868	1118.76518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.44	1	100.44	99.944	100.94	0								0	0	0	0.15486	1	36919	36919		0	0	1		+		43801	15639	32074	32330	42732	42732					0.21055146561297988
RLKKLNEL	8	Unmodified	_RLKKLNEL_					0	0	0			REV__nc|ENSG00000170820|P23945-3|FSHR	REV__nc|ENSG00000170820|P23945-3|FSHR	MULTI-SECPEP	A375_MHC_IP_R2	2	506.70654296875	2	507.326934	1012.63931	-0.54845	-0.00027825	-0.24981	-0.00012674	-0.79827	-0.00040498	507.32683355687215	142.76	0.40472	142.79	142.64	143.04	0.030746					10	7	2	0	0	0	0.972	1	55807	55807		0.6015	0	1	835820	+		43802	21022	32075	32331	42733	42733					0.1335001498522388
RLKKWRIF	8	Unmodified	_RLKKWRIF_					0	0	0			REV__PAM|p.S892L|1|0.13|ENSG00000145730|chr5:103025320-103025320|C/T|missense_variant	REV__PAM|p.S892L|1|0.13|ENSG00000145730|chr5:103025320-103025320|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	382.6254577636719	3	382.913466	1145.71857	-0.15258	-5.8426E-05	-1.2345	-0.00047271	-1.3871	-0.00053114	383.2473278385303	45.359	0.45657	46.124	45.846	46.303	0.76519					14	8	2	0	0	0	0.972	1	17024	17024		1.6526	0.69035	1	1401400	+		43803	27712	32076	32332	42734	42734					0.15153706730006888
RLKLKDGNRIS	11	Unmodified	_RLKLKDGNRIS_					0	0	0		ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	MULTI-SECPEP	A375_MHC_IP_R1	1	434.3329162597656	3	433.933366	1298.77827	-0.38115	-0.00016539	-0.31236	-0.00013554	-0.69351	-0.00030094	433.93314369520226	130	0.4048	130	129.75	130.16	0					11	7	2	0	0	0	0.99955	1	50030	50030		0.40827	0	1	6375000			43804	912	32077	32333	42735	42735					0.14082932882752175
RLKMLEEKT	9	Unmodified	_RLKMLEEKT_					0	0	0			REV__nc|ENSG00000054654|Q8WXH0|SYNE2	REV__nc|ENSG00000054654|Q8WXH0|SYNE2	MSMS	A375_MHC_IP_R2	2	383.280517578125	3	383.221636	1146.64308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.638	1	50.394	49.894	50.894	0.75587								0	0	0	0.14792	1	18654	18654		24.991	9.2523	1		+		43805	16407	32078	32334	42736	42736					0.07562316696748894
RLKPEIQCV	9	Unmodified	_RLKPEIQCV_					0	0	0		ENSG00000163975|ENST00000296350|MELTF	ENSG00000163975|ENST00000296350|MELTF	ENSG00000163975|ENST00000296350|MELTF	MULTI-SECPEP	A375_MHC_IP_R2	2	543.7097778320312	2	543.310426	1084.6063	-1.1004	-0.00059784	-0.26801	-0.00014561	-1.3684	-0.00074345	543.3105859424214	37.564	0.71898	38.335	38.12	38.839	0.7709					19	13	2	0	0	0	0.4465	1	13776	13776		31.268	8.1199	1	3661300			43806	6756	32079	32335	42737	42737					0.06738064870864946
RLKQFLFLF	9	Unmodified	_RLKQFLFLF_					0	0	0			REV__nc|ENSG00000215866|Q8N9X3|LINC01356	REV__nc|ENSG00000215866|Q8N9X3|LINC01356	MULTI-MSMS	A375_MHC_IP_R2	2	606.7691650390625	2	606.368601	1210.72265	-0.40733	-0.00024699	1.441	0.00087379	1.0337	0.0006268	606.3692758125063	130.8	0.71275	131.01	130.91	131.62	0.2142					18	13	3	0	0	0	0.75523	1	51467	51467		2.0598	0.21551	1	7222400	+		43807	27499	32080	32336	42738	42738					0.1257175143305176
RLKRGAKP	8	Unmodified	_RLKRGAKP_					0	0	0		ENSG00000075240|ENST00000406902|GRAMD4	ENSG00000075240|ENST00000406902|GRAMD4	ENSG00000075240|ENST00000406902|GRAMD4	MSMS	A375_MHC_IP_R1	1	463.6679382324219	2	463.306336	924.598118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.75	1	143.75	143.25	144.25	0								0	0	0	0.16876	1	55140	55140		0.69038	0	1				43808	1604	32081	32337	42739	42739					0.13280298736412988
RLKRHIWTQ	9	Unmodified	_RLKRHIWTQ_					0	0	0			REV__ENST00000472641.1_1_6:32116492-32119637:-|nuORF	REV__ENST00000472641.1_1_6:32116492-32119637:-|nuORF	MSMS	A375_MHC_IP_R2	2	413.2357177734375	3	413.247396	1236.72036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.9	1	18.496	17.996	18.996	0.59616								0	0	0	0.15486	1	5292	5292		1.0715	0.56551	1		+		43809	23027	32082	32338	42740	42740					0.11146715747963754
RLKRHIWTQ	9	Unmodified	_RLKRHIWTQ_					0	0	0			REV__ENST00000472641.1_1_6:32116492-32119637:-|nuORF	REV__ENST00000472641.1_1_6:32116492-32119637:-|nuORF	MSMS	A375_MHC_IP_R2	2	413.23577880859375	3	413.247396	1236.72036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.695	1	19.298	18.798	19.798	0.60308								0	0	0	0.15486	1	5573	5573		0.26902	0	1		+		43810	23027	32082	32338	42741	42741					0.11146715747963754
RLKRLVLKKLS	11	Unmodified	_RLKRLVLKKLS_					0	0	0			REV__nc|ENSG00000185745|P09914-2|IFIT1	REV__nc|ENSG00000185745|P09914-2|IFIT1	MSMS	A375_MHC_IP_R2	2	677.475341796875	2	677.474463	1352.93437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.77	1	54.521	54.021	55.021	0.75105								0	0	0	0.16334	1	20304	20304		1.3295	0.87119	1		+		43811	21916	32083	32339	42742	42742					0.2720242312400387
RLKRMKRRSHY	11	Unmodified	_RLKRMKRRSHY_					0	0	0			REV__nc|ENSG00000006459|Q6ZMT4-2|KDM7A	REV__nc|ENSG00000006459|Q6ZMT4-2|KDM7A	MULTI-MSMS	A375_MHC_IP_R1	1	511.03411865234375	3	510.968527	1529.88375	-0.80632	-0.000412	0.15749	8.0475E-05	-0.64882	-0.00033153	510.96867906451695	141.69	1.4855	141.69	140.6	142.08	0					43	28	2	0	0	0	0.73934	2	54211	54211;54424		0	0	1	1175200	+		43812	16136	32084	32340	42743;42744	42743					0.1400057052737793
RLKRMKRRSHY	11	Unmodified	_RLKRMKRRSHY_					0	0	0			REV__nc|ENSG00000006459|Q6ZMT4-2|KDM7A	REV__nc|ENSG00000006459|Q6ZMT4-2|KDM7A	MULTI-MSMS	A375_MHC_IP_R2	2	511.03436279296875	3	510.968527	1529.88375	-0.55927	-0.00028577	0.077244	3.9469E-05	-0.48203	-0.0002463	510.9686872306031	141.73	1.8374	141.76	141	142.84	0.030731					60	35	2	0	0	0	0.73934	1	55215	55215		0	0	1	1900600	+		43813	16136	32084	32340	42745	42745					0.1400057052737793
RLKRMLIRLIN	11	Unmodified	_RLKRMLIRLIN_					0	0	0			REV__ENSG00000080293|ENST00000019103|SCTR	REV__ENSG00000080293|ENST00000019103|SCTR	MSMS	A375_MHC_IP_R1	1	713.884521484375	2	713.463573	1424.91259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.91	1	144.91	144.41	145.41	0								0	0	0	0.1636	1	55561	55561		0	0	1		+		43814	16745	32085	32341	42746	42746					0.21713295103813834
RLKSRRSPVP	10	Unmodified	_RLKSRRSPVP_					0	0	0			REV__ENST00000425494.1_1_10:37812205-37812634:+|nuORF	REV__ENST00000425494.1_1_10:37812205-37812634:+|nuORF	MSMS	A375_MHC_IP_R1	1	399.65069580078125	3	399.250918	1194.73092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.733	1	4.733	4.233	5.233	0								0	0	0	0.15637	1	1081	1081		0.15932	0	1		+		43815	24636	32086	32342	42747	42747					0.14134698402403956
RLLAAGRI	8	Unmodified	_RLLAAGRI_					0	0	0			REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	MSMS	A375_MHC_IP_R1	1	435.282470703125	2	435.287611	868.56067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.941	1	88.941	88.441	89.441	0								0	0	0	0.16876	1	32665	32665		14.582	0	1		+		43816	24153	32087	32343	42748	42748					0.12113207470781617
RLLAEIGAV	9	Unmodified	_RLLAEIGAV_					0	0	0		ENST00000496583.1_1_19:54695101-54695536:+|nuORF;ENSG00000170892|ENST00000396388|TSEN34	ENST00000496583.1_1_19:54695101-54695536:+|nuORF	ENST00000496583.1_1_19:54695101-54695536:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	471.6922912597656	2	471.292559	940.570566	-0.48618	-0.00022913	-0.087924	-4.1438E-05	-0.57411	-0.00027057	471.29248607713066	76.853	0.46043	76.853	76.622	77.083	0					14	8	2	0	0	0	0.28216	1	28015	28015		49.933	11.959	1	3159800			43817	7555	32088	32344	42749	42749					0.0979035068551184
RLLAEIGAV	9	Unmodified	_RLLAEIGAV_					0	0	0		ENST00000496583.1_1_19:54695101-54695536:+|nuORF;ENSG00000170892|ENST00000396388|TSEN34	ENST00000496583.1_1_19:54695101-54695536:+|nuORF	ENST00000496583.1_1_19:54695101-54695536:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	471.6918640136719	2	471.292559	940.570566	-0.58045	-0.00027356	-0.41877	-0.00019736	-0.99922	-0.00047093	471.2923388329546	75.809	0.50969	76.55	76.282	76.792	0.74052					14	9	2	0	0	0	0.14922	1	28786	28786		41.84	3.8656	1	3110800			43818	7555	32088	32344	42750	42750					0.0979035068551184
RLLAYISQV	9	Unmodified	_RLLAYISQV_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-SECPEP	A375_MHC_IP_R1	1	532.2183227539062	2	531.818941	1061.62333	-0.79529	-0.00042295	0.51175	0.00027216	-0.28354	-0.00015079	531.818828318647	84.247	0.50476	84.247	84.041	84.545	0					16	9	2	0	0	0	0.34746	1	30857	30857		45.7	5.7499	1	2522100			43819	2240	32089	32345	42751	42751					0.09498308748311501
RLLDGAFKL	9	Unmodified	_RLLDGAFKL_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;ENST00000491646.1_1_2:122217554-122217677:-|nuORF	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-SECPEP	A375_MHC_IP_R1	1	517.213134765625	2	516.813659	1031.61277	-0.37103	-0.00019175	-0.12322	-6.3683E-05	-0.49425	-0.00025544	516.8135598875945	78.53	1.4235	78.53	78.15	79.574	0					60	27	4	0	0	0	0.053555	1	28588	28588		80.676	8.7538	1	116890000			43820	1576	32090	32346	42752	42752					0.09822326093899392
RLLDGLAQA	9	Unmodified	_RLLDGLAQA_					0	0	0		ENSG00000149782|ENST00000279230|PLCB3;nc|ENSG00000149782|Q01970-2|PLCB3	ENSG00000149782|ENST00000279230|PLCB3	ENSG00000149782|ENST00000279230|PLCB3	MULTI-SECPEP	A375_MHC_IP_R1	1	479.1794128417969	2	478.779816	955.545079	-0.36301	-0.0001738	0.22961	0.00010993	-0.1334	-6.387E-05	478.77981008873957	62.94	0.5641	62.94	62.609	63.173	0					18	10	2	0	0	0	0.50484	1	22730	22730		34.932	4.7073	1	2822100			43821	5830	32091	32347	42753	42753					0.0655287616308442
RLLDKLRTV	9	Unmodified	_RLLDKLRTV_					0	0	0			REV__ENSG00000054523|ENST00000676179|KIF1B	REV__ENSG00000054523|ENST00000676179|KIF1B	MULTI-MSMS	A375_MHC_IP_R1	1	372.6427001953125	3	371.908269	1112.70298	0.30133	0.00011207	-0.27688	-0.00010298	0.024447	9.0921E-06	371.9081632434524	40.87	0.7069	40.87	40.559	41.266	0					46	13	5	0	0	0	0.048995	1	14031	14031		64.692	0	1	73799000	+		43822	16404	32092	32348	42754	42754					0.15113375422311037
RLLDKLRTV	9	Unmodified	_RLLDKLRTV_					0	0	0			REV__ENSG00000054523|ENST00000676179|KIF1B	REV__ENSG00000054523|ENST00000676179|KIF1B	MULTI-SECPEP	A375_MHC_IP_R1	1	372.6427001953125	3	371.908269	1112.70298	0.30133	0.00011207	-0.27688	-0.00010298	0.024447	9.0921E-06	371.9081632434524	40.87	0.7069	40.87	40.559	41.266	0					46	13	5	0	0	0	0.058501	1	14031	14031		64.692	0	1	73799000	+		43823	16404	32092	32348	42755	42755					0.15113375422311037
RLLDKLRTV	9	Unmodified	_RLLDKLRTV_					0	0	0			REV__ENSG00000054523|ENST00000676179|KIF1B	REV__ENSG00000054523|ENST00000676179|KIF1B	MULTI-SECPEP	A375_MHC_IP_R2	2	372.30828857421875	3	371.908269	1112.70298	0.40884	0.00015205	-0.31369	-0.00011666	0.095148	3.5386E-05	371.9081482113027	39.776	0.7617	40.55	40.269	41.031	0.77451					40	14	4	0	0	0	0.16595	1	14665	14665		49.742	0	1	64537000	+		43824	16404	32092	32348	42756	42756					0.15113375422311037
RLLDKWVEL	9	Unmodified	_RLLDKWVEL_					0	0	0		nc|ENSG00000137802|O60336-2|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;ENST00000502292.5_1_15:42105116-42105356:+|nuORF;ENST00000505061.5_1_15:42105116-42107966:+|nuORF	nc|ENSG00000137802|O60336-2|MAPKBP1	nc|ENSG00000137802|O60336-2|MAPKBP1	MULTI-MSMS	A375_MHC_IP_R1	1	391.6325988769531	3	391.232641	1170.67609	0.19659	7.6911E-05	-0.024865	-9.7282E-06	0.17172	6.7183E-05	391.2325893465459	89.246	0.45671	89.246	89.069	89.526	0					15	8	3	0	0	0	0.43945	1	32810	32810		22.775	9.9024	1	1700100			43825	4914	32093	32349	42757	42757					0.09758266811127214
RLLDKWVEL	9	Unmodified	_RLLDKWVEL_					0	0	0		nc|ENSG00000137802|O60336-2|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;ENST00000502292.5_1_15:42105116-42105356:+|nuORF;ENST00000505061.5_1_15:42105116-42107966:+|nuORF	nc|ENSG00000137802|O60336-2|MAPKBP1	nc|ENSG00000137802|O60336-2|MAPKBP1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	391.232641	1170.67609	-0.11483	-4.4924E-05	0.1024	4.0062E-05	-0.012428	-4.8623E-06	391.2326535018739	88.361	0.45433	89.093	88.825	89.279	0.7318	-0.076544	0.00010471	NaN	22.775	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1873100			43826	4914	32093	32349							0.09758266811127214
RLLDLHQSW	9	Unmodified	_RLLDLHQSW_					0	0	0		ENSG00000164219|ENST00000419445|PGGT1B;nc|ENSG00000164219|P53609-2|PGGT1B	ENSG00000164219|ENST00000419445|PGGT1B	ENSG00000164219|ENST00000419445|PGGT1B	MULTI-MSMS	A375_MHC_IP_R1	1	585.2213134765625	2	584.317097	1166.61964	-0.39005	-0.00022791	1.9901	0.0011629	1.6001	0.00093494	584.3174121112063	68.561	0.71109	68.561	68.108	68.819	0					25	13	3	0	0	0	0.54799	1	24830	24830		8.7454	0.83525	1	4509400			43827	6803	32094	32350	42758	42758					0.04299638974453046
RLLDRIHSI	9	Unmodified	_RLLDRIHSI_					0	0	0		ENSG00000177169|ENST00000321867|ULK1;ENST00000540647.5_1_12:132402872-132405903:+|nuORF	ENSG00000177169|ENST00000321867|ULK1	ENSG00000177169|ENST00000321867|ULK1	MULTI-MSMS	A375_MHC_IP_R2	2	375.2960205078125	3	374.896252	1121.66693	0.42448	0.00015914	-0.50521	-0.0001894	-0.080732	-3.0266E-05	374.896027550774	47.922	0.40255	48.683	48.48	48.883	0.76128					16	7	3	0	0	0	0.074484	1	18002	18002		55.249	18.742	1	2748000			43828	8065	32095	32351	42759	42759					0.11095918245473513
RLLDRKVLL	9	Unmodified	_RLLDRKVLL_					0	0	0		ENSG00000143457|ENST00000271732|GOLPH3L	ENSG00000143457|ENST00000271732|GOLPH3L	ENSG00000143457|ENST00000271732|GOLPH3L	MULTI-MSMS	A375_MHC_IP_R1	1	376.3207092285156	3	375.920397	1124.73936	0.46353	0.00017425	0.082772	3.1116E-05	0.5463	0.00020536	375.92040642922	51.956	0.61063	51.956	51.676	52.287	0					40	11	5	0	0	0	0.050868	1	18408	18408		59.052	9.3105	1	41533000			43829	5394	32096	32352	42760	42760					0.18198252319029962
RLLDRKVLL	9	Unmodified	_RLLDRKVLL_					0	0	0		ENSG00000143457|ENST00000271732|GOLPH3L	ENSG00000143457|ENST00000271732|GOLPH3L	ENSG00000143457|ENST00000271732|GOLPH3L	MULTI-MSMS	A375_MHC_IP_R2	2	376.3205261230469	3	375.920397	1124.73936	0.15851	5.9588E-05	0.19236	7.2314E-05	0.35088	0.0001319	375.9204096002822	50.784	0.91038	51.538	51.26	52.17	0.75406					44	17	4	0	0	0	0.11629	2	19083	19058;19083		43.982	5.3671	1	35270000			43830	5394	32096	32352	42761;42762	42762					0.18198252319029962
RLLDVLAPL	9	Unmodified	_RLLDVLAPL_					0	0	0		ENSG00000182871|ENST00000651438|COL18A1;COL18A1|p.V695Rfs*18|1|0.49|ENSG00000182871|chr21:45476383-45476384|-/C|frameshift_variant	ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	MULTI-MSMS	A375_MHC_IP_R1	1	505.72344970703125	2	505.32386	1008.63317	-0.44192	-0.00022331	0.14373	7.2628E-05	-0.29819	-0.00015068	505.3238789359914	119.33	0.65864	119.33	119.03	119.69	0					29	12	3	0	0	0	0.01574	1	44050	44050		88.904	17.77	1	51667000			43831	8443	32097	32353	42763	42763					0.12919496753693238
RLLDYTRTV	9	Unmodified	_RLLDYTRTV_					0	0	0		nc|ENSG00000148384|Q9NRR6-2|INPP5E;ENSG00000148384|ENST00000371712|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	MULTI-SECPEP	A375_MHC_IP_R1	1	569.2250366210938	2	568.824755	1135.63496	-0.31088	-0.00017684	0.58613	0.0003334	0.27525	0.00015657	568.8251767701817	50.776	0.50715	50.776	50.561	51.068	0					19	9	3	0	0	0	0.67471	1	18015	18015		22.658	3.2961	1	2526100			43832	5738	32098	32354	42764	42764					0.07256505771647426
RLLDYTRTV	9	Unmodified	_RLLDYTRTV_					0	0	0		nc|ENSG00000148384|Q9NRR6-2|INPP5E;ENSG00000148384|ENST00000371712|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	MULTI-MSMS	A375_MHC_IP_R2	2	569.2244262695312	2	568.824755	1135.63496	-0.59833	-0.00034034	0.27509	0.00015648	-0.32324	-0.00018386	568.8248638368158	49.811	0.35907	50.565	50.394	50.753	0.75406					15	6	3	0	0	0	0.39503	1	18752	18752		32.037	7.0465	1	2547300			43833	5738	32098	32354	42765	42765					0.07256505771647426
RLLDYVATV	9	Unmodified	_RLLDYVATV_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	A375_MHC_IP_R1	1	525.7029418945312	2	525.303124	1048.5917	-0.42736	-0.00022449	0.70909	0.00037249	0.28174	0.000148	525.3036081848051	88.174	0.51109	88.174	87.898	88.409	0					21	9	3	0	0	0	0.14858	1	32351	32351		41.956	5.8285	1	6570100			43834	3337	32099	32355	42766	42766					0.06934315994340068
RLLDYVVNI	9	Unmodified	_RLLDYVVNI_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-SECPEP	A375_MHC_IP_R1	1	553.2240600585938	2	552.824224	1103.63389	-0.37329	-0.00020636	0.071234	3.938E-05	-0.30205	-0.00016698	552.8242617869686	110.06	1.5799	110.06	109.73	111.31	0					75	30	5	0	0	0	0.046478	1	40313	40313		92.653	23.548	1	64830000			43835	9137	32100	32356	42767	42767					0.08622291402753035
RLLEATSYL	9	Unmodified	_RLLEATSYL_					0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	MULTI-SECPEP	A375_MHC_IP_R1	1	533.6732177734375	2	533.300581	1064.58661	-0.60635	-0.00032337	-0.27751	-0.000148	-0.88386	-0.00047136	533.3003302228319	77.768	1.0685	77.768	77.386	78.454	0					55	20	5	0	0	0	0.29257	1	28369	28369		57.722	24.936	1	42741000			43836	866	32101	32357	42768	42768					0.05690012131753974
RLLEATSYL	9	Unmodified	_RLLEATSYL_					0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	MULTI-SECPEP	A375_MHC_IP_R2	2	533.6741333007812	2	533.300581	1064.58661	-0.73776	-0.00039345	0.23053	0.00012294	-0.50723	-0.00027051	533.3006268007332	76.786	1.2152	77.527	77.199	78.414	0.74052					55	23	4	0	0	0	0.38134	1	29186	29186		49.554	20.473	1	60599000			43837	866	32101	32357	42769	42769					0.05690012131753974
RLLEGVKQA	9	Unmodified	_RLLEGVKQA_					0	0	0		ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	MULTI-MSMS	A375_MHC_IP_R1	1	507.7083435058594	2	507.308741	1012.60293	-0.71742	-0.00036395	-0.20338	-0.00010318	-0.92079	-0.00046713	507.3086389579772	26.499	0.45696	26.499	26.322	26.779	0					13	8	2	0	0	0	0.14858	1	7915	7915		41.956	9.1699	1	4666300			43838	3388	32102	32358	42770	42770					0.0971313808852301
RLLEGVNQL	9	Unmodified	_RLLEGVNQL_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-SECPEP	A375_MHC_IP_R1	1	521.7060546875	2	521.306198	1040.59784	-0.50503	-0.00026328	0.045629	2.3787E-05	-0.4594	-0.00023949	521.30629905572	64.015	0.4564	64.015	63.735	64.191	0					14	8	2	0	0	0	0.71071	1	23181	23181		14.405	11.516	1	1900500			43839	1521	32103	32359	42771	42771					0.07916834225898128
RLLEIDPYL	9	Unmodified	_RLLEIDPYL_					0	0	0		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-SECPEP	A375_MHC_IP_R1	1	566.7234497070312	2	566.324057	1130.63356	-0.22025	-0.00012473	-0.065905	-3.7324E-05	-0.28616	-0.00016206	566.324058614114	106.22	0.61424	106.22	105.91	106.52	0					26	11	3	0	0	0	0.57304	1	38964	38964		29.841	21.095	1	3492300			43840	3223	32104	32360	42772	42772					0.07346871682898382
RLLEIDPYL	9	Unmodified	_RLLEIDPYL_					0	0	0		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-SECPEP	A375_MHC_IP_R2	2	566.7235107421875	2	566.324057	1130.63356	-0.37081	-0.00021	-0.22863	-0.00012948	-0.59944	-0.00033948	566.3239212067109	105.28	0.60941	106.05	105.72	106.33	0.76308					27	11	3	0	0	0	0.30925	1	39815	39815		49.554	16.769	1	5728900			43841	3223	32104	32360	42773	42773					0.07346871682898382
RLLELLPPL	9	Unmodified	_RLLELLPPL_					0	0	0		ENST00000515734.2_1_5:59783993-59785590:+|nuORF	ENST00000515734.2_1_5:59783993-59785590:+|nuORF	ENST00000515734.2_1_5:59783993-59785590:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	532.7484130859375	2	532.347335	1062.68012	-0.37676	-0.00020057	1.7391	0.0009258	1.3623	0.00072523	532.3480360399788	126.23	0.30347	126.23	126.1	126.41	0					9	5	2	0	0	0	0.2989	1	48219	48219		39.95	0	1	14072000			43842	12955	32105	32361	42774	42774					0.15128356304853696
RLLENMTEV	9	Unmodified	_RLLENMTEV_					0	0	0		nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1;nc|ENSG00000179889|Q6P996-3|PDXDC1	nc|ENSG00000179889|Q6P996-4|PDXDC1	nc|ENSG00000179889|Q6P996-4|PDXDC1	MULTI-SECPEP	A375_MHC_IP_R1	1	553.1898193359375	2	552.789524	1103.56449	-0.55905	-0.00030904	0.45651	0.00025236	-0.10253	-5.668E-05	552.7898064561814	64.065	0.7094	64.065	63.735	64.444	0					27	13	3	0	0	0	0.13199	1	23163	23163		75.761	31.903	1	6836000			43843	8258	32106	32362	42775	42775					0.016854643916758505
RLLENMTEV	9	Unmodified	_RLLENMTEV_					0	0	0		nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1;nc|ENSG00000179889|Q6P996-3|PDXDC1	nc|ENSG00000179889|Q6P996-4|PDXDC1	nc|ENSG00000179889|Q6P996-4|PDXDC1	MULTI-SECPEP	A375_MHC_IP_R2	2	552.6447143554688	2	552.789524	1103.56449	-0.73141	-0.00040432	0.23287	0.00012873	-0.49855	-0.00027559	552.7897089821611	63.191	0.60905	63.934	63.584	64.193	0.74263					23	11	3	0	0	0	0.1952	1	23933	23933		57.722	33.701	1	5746900			43844	8258	32106	32362	42776	42776					0.016854643916758505
RLLEQKVEL	9	Unmodified	_RLLEQKVEL_					0	0	0		ENSG00000100941|ENST00000216832|PNN;ENST00000557680.1_1_14:39648378-39651535:+|nuORF	ENSG00000100941|ENST00000216832|PNN	ENSG00000100941|ENST00000216832|PNN	MULTI-MSMS	A375_MHC_IP_R1	1	376.96435546875	3	376.564279	1126.67101	0.82026	0.00030888	-0.48155	-0.00018133	0.33871	0.00012755	376.5639625585241	48.918	0.40419	48.918	48.729	49.134	0					17	7	3	0	0	0	0.33243	1	17284	17284		28.234	5.4587	1	4694500			43845	2236	32107	32363	42777	42777					0.11273962948507688
RLLEQKVEL	9	Unmodified	_RLLEQKVEL_					0	0	0		ENSG00000100941|ENST00000216832|PNN;ENST00000557680.1_1_14:39648378-39651535:+|nuORF	ENSG00000100941|ENST00000216832|PNN	ENSG00000100941|ENST00000216832|PNN	MULTI-SECPEP	A375_MHC_IP_R1	1	564.74267578125	2	564.342781	1126.67101	0.067881	3.8308E-05	-0.46406	-0.00026189	-0.39618	-0.00022358	564.3424356513871	48.903	0.45472	48.903	48.679	49.134	0					18	8	3	0	0	0	0.11887	1	17279	17279		71.708	20.078	1	5242400			43846	2236	32107	32363	42778	42778					0.11273962948507688
RLLEQKVEL	9	Unmodified	_RLLEQKVEL_					0	0	0		ENSG00000100941|ENST00000216832|PNN;ENST00000557680.1_1_14:39648378-39651535:+|nuORF	ENSG00000100941|ENST00000216832|PNN	ENSG00000100941|ENST00000216832|PNN	MULTI-MSMS	A375_MHC_IP_R2	2	376.9642639160156	3	376.564279	1126.67101	0.33814	0.00012733	-0.45216	-0.00017027	-0.11402	-4.2934E-05	376.5639957804276	47.895	0.50456	48.656	48.378	48.883	0.76128					20	9	3	0	0	0	0.013192	1	17979	17979		92.201	12.774	1	6978200			43847	2236	32107	32363	42779	42779					0.11273962948507688
RLLEQKVEL	9	Unmodified	_RLLEQKVEL_					0	0	0		ENSG00000100941|ENST00000216832|PNN;ENST00000557680.1_1_14:39648378-39651535:+|nuORF	ENSG00000100941|ENST00000216832|PNN	ENSG00000100941|ENST00000216832|PNN	MULTI-SECPEP	A375_MHC_IP_R2	2	564.7422485351562	2	564.342781	1126.67101	-0.37301	-0.0002105	-0.59475	-0.00033564	-0.96776	-0.00054615	564.342388542438	47.895	0.40255	48.656	48.48	48.883	0.76128					16	7	3	0	0	0	0.32966	1	17982	17982		49.527	5.7549	1	6825100			43848	2236	32107	32363	42780	42780					0.11273962948507688
RLLESVVVL	9	Unmodified	_RLLESVVVL_					0	0	0		ENSG00000157600|ENST00000372068|TMEM164	ENSG00000157600|ENST00000372068|TMEM164	ENSG00000157600|ENST00000372068|TMEM164	MULTI-SECPEP	A375_MHC_IP_R1	1	514.728759765625	2	514.329142	1026.64373	-0.49465	-0.00025441	-0.097177	-4.9981E-05	-0.59183	-0.0003044	514.3291171583161	98.853	0.61069	98.853	98.557	99.168	0					28	11	3	0	0	0	0.4465	1	36296	36296		38.176	5.8701	1	6753600			43849	6254	32108	32364	42781	42781					0.13147479408144136
RLLETVIDV	9	Unmodified	_RLLETVIDV_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MSMS	A375_MHC_IP_R1	1	529.7164306640625	2	529.316232	1056.61791	-0.45585	-0.00024129	-0.10002	-5.2945E-05	-0.55588	-0.00029423	529.3160767305375	92.017	0.60626	92.017	91.706	92.312	0					20	11	2	0	0	0	0.066859	1	33805	33805		57.722	7.789	1	2876000			43850	8230	32109	32365	42782	42782					0.0918658516582127
RLLEVPVML	9	Unmodified	_RLLEVPVML_					0	0	0		ENST00000591718.1_1_19:55966993-55972941:-|nuORF;ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2	ENST00000591718.1_1_19:55966993-55972941:-|nuORF	ENST00000591718.1_1_19:55966993-55972941:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	535.7265014648438	2	535.325545	1068.63654	-0.31055	-0.00016625	-0.25875	-0.00013852	-0.56931	-0.00030477	535.3253660623784	115.53	0.45872	115.53	115.32	115.78	0					15	8	2	0	0	0	0.2989	1	42370	42370		39.95	21.803	1	7463000			43851	1338	32110	32366	42783	42783					0.10496423536051225
RLLEVPVML	9	Unmodified	_RLLEVPVML_					0	0	0		ENST00000591718.1_1_19:55966993-55972941:-|nuORF;ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2	ENST00000591718.1_1_19:55966993-55972941:-|nuORF	ENST00000591718.1_1_19:55966993-55972941:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	535.7257690429688	2	535.325545	1068.63654	-0.62689	-0.00033559	0.00033611	1.7993E-07	-0.62655	-0.00033541	535.3255444461755	114.45	0.66267	115.16	114.93	115.6	0.70985					22	12	3	0	0	0	0.39657	1	43150	43150		32.786	13.529	1	5696700			43852	1338	32110	32366	42784	42784					0.10496423536051225
RLLEVPVML	9	Oxidation (M)	_RLLEVPVM(Oxidation (M))L_		RLLEVPVM(1)L		RLLEVPVM(50)L	0	0	1		ENST00000591718.1_1_19:55966993-55972941:-|nuORF;ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2	ENST00000591718.1_1_19:55966993-55972941:-|nuORF	ENST00000591718.1_1_19:55966993-55972941:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	543.722412109375	2	543.323002	1084.63145	-0.52285	-0.00028407	-0.045867	-2.4921E-05	-0.56871	-0.000309	543.3230638737517	101.37	0.85957	101.37	101.04	101.9	0					40	16	3	0	0	0	0.28216	1	37222	37222		49.933	41.188	1	7473400			43853	1338	32110	32367	42785	42785		36			0.09252119673442394
RLLEVQSQV	9	Unmodified	_RLLEVQSQV_					0	0	0		ENST00000527306.1_1_8:42752256-42852891:+|nuORF;ENSG00000168172|ENST00000307602|HOOK3	ENST00000527306.1_1_8:42752256-42852891:+|nuORF	ENST00000527306.1_1_8:42752256-42852891:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	536.6951904296875	2	536.31148	1070.60841	-0.58253	-0.00031242	-0.22757	-0.00012205	-0.8101	-0.00043446	536.3111572854253	51.437	0.35453	51.437	51.27	51.625	0					8	6	2	0	0	0	0.71071	1	18249	18249		14.405	1.3629	1	1502300			43854	7272	32111	32368	42786	42786					0.07592816880332975
RLLEVQSQV	9	Unmodified	_RLLEVQSQV_					0	0	0		ENST00000527306.1_1_8:42752256-42852891:+|nuORF;ENSG00000168172|ENST00000307602|HOOK3	ENST00000527306.1_1_8:42752256-42852891:+|nuORF	ENST00000527306.1_1_8:42752256-42852891:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	536.6708984375	2	536.31148	1070.60841	-1.0024	-0.00053762	0.18288	9.8083E-05	-0.81955	-0.00043953	536.3113654929258	50.532	0.30418	51.286	51.108	51.412	0.75406					8	5	2	0	0	0	0.57304	1	18979	18979		18.373	2.224	1	1535000			43855	7272	32111	32368	42787	42787					0.07592816880332975
RLLEYTPTA	9	Unmodified	_RLLEYTPTA_					0	0	0		ENSG00000082701|ENST00000264235|GSK3B;nc|ENSG00000082701|P49841-2|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	MULTI-MSMS	A375_MHC_IP_R1	1	532.6926879882812	2	532.292756	1062.57096	-0.62645	-0.00033345	-0.2508	-0.0001335	-0.87725	-0.00046695	532.2927214196154	55.304	0.45694	55.304	55.025	55.482	0					21	8	3	0	0	0	0.22013	1	19742	19742		36.506	12.716	1	11657000			43856	1765	32112	32369	42788	42788					0.04217725614716983
RLLFLLLW	8	Unmodified	_RLLFLLLW_					0	0	0			REV__ENST00000398073.6_1_12:58216199-58216532:-|nuORF	REV__ENST00000398073.6_1_12:58216199-58216532:-|nuORF	MSMS	A375_MHC_IP_R1	1	358.5892639160156	3	358.567184	1072.67972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.889	1	39.889	39.389	40.389	0								0	0	0	0.16876	1	13671	13671		1.6526	0	1		+		43857	24370	32113	32370	42789	42789					0.14628981375653893
RLLGEQIIL	9	Unmodified	_RLLGEQIIL_					0	0	0		ENSG00000232838|ENST00000432901|PET117;ENST00000489422.1_1_20:18118955-18122998:+|nuORF;ENST00000484001.1_1_20:18119001-18122998:+|nuORF;ENST00000492286.1_1_20:18119088-18122998:+|nuORF	ENSG00000232838|ENST00000432901|PET117	ENSG00000232838|ENST00000432901|PET117	MULTI-SECPEP	A375_MHC_IP_R2	2	528.2347412109375	2	527.834591	1053.65463	-0.25703	-0.00013567	-0.43039	-0.00022717	-0.68742	-0.00036284	527.8343033928921	94.707	1.2191	95.452	95.071	96.29	0.74474					50	23	4	0	0	0	0.14572	1	35939	35939		62.573	6.3957	1	16557000			43858	9731	32114	32371	42790	42790					0.12994881782424272
RLLGKLPEL	9	Unmodified	_RLLGKLPEL_					0	0	0		nc|ENSG00000123358|P22736-2|NR4A1;ENSG00000123358|ENST00000394825|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	MULTI-SECPEP	A375_MHC_IP_R1	1	520.23681640625	2	519.837134	1037.65972	-0.44824	-0.00023301	0.42743	0.00022219	-0.020806	-1.0816E-05	519.8373183397885	70.774	0.87069	70.774	70.442	71.313	0					47	16	5	0	0	0	0.20059	1	25702	25702		59.368	11.774	1	50501000			43859	3841	32115	32372	42791	42791					0.14239185645033103
RLLGPQLGLLS	11	Unmodified	_RLLGPQLGLLS_					0	0	0			REV__ENST00000489749.1_1_2:7018228-7023923:+|nuORF	REV__ENST00000489749.1_1_2:7018228-7023923:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	389.9805908203125	3	389.580041	1165.71829	0.38686	0.00015071	1.0575	0.000412	1.4444	0.00056271	389.5803686661583	54.138	0.30099	54.138	53.962	54.263	0					9	5	2	0	0	0	0.64288	1	19345	19345		19.987	7.7462	1	1918200	+		43860	25376	32116	32373	42792	42792					0.14206242219529486
RLLGPQLGLLS	11	Unmodified	_RLLGPQLGLLS_					0	0	0			REV__ENST00000489749.1_1_2:7018228-7023923:+|nuORF	REV__ENST00000489749.1_1_2:7018228-7023923:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	389.580041	1165.71829	0.38686	0.00015071	1.0575	0.000412	1.4444	0.00056271	389.5803686661583	54.138	0.30099	54.138	53.962	54.263	0	0	0	NaN	19.987	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1918200	+		43861	25376	32116	32373							0.14206242219529486
RLLGPQPRPLW	11	Unmodified	_RLLGPQPRPLW_					0	0	0		ENST00000262435.13_1_17:62658063-62658153:-|nuORF	ENST00000262435.13_1_17:62658063-62658153:-|nuORF	ENST00000262435.13_1_17:62658063-62658153:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	445.334228515625	3	444.934818	1331.78262	-0.68135	-0.00030315	-0.11947	-5.3154E-05	-0.80081	-0.00035631	444.93467518512205	71.778	0.40568	72.512	72.264	72.669	0.73421					12	7	2	0	0	0	0.73807	1	27279	27279		1.2148	0.70888	1	2128100			43862	10303	32117	32374	42793	42793					0.13000442096313236
RLLGPQPRPLW	11	Unmodified	_RLLGPQPRPLW_					0	0	0		ENST00000262435.13_1_17:62658063-62658153:-|nuORF	ENST00000262435.13_1_17:62658063-62658153:-|nuORF	ENST00000262435.13_1_17:62658063-62658153:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	444.934818	1331.78262	0.027955	1.2438E-05	0.23309	0.00010371	0.26105	0.00011615	445.2692346020089	72.855	0.40552	72.855	72.575	72.98	0	0.17133	0.00026425	NaN	1.2148	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1948500			43863	10303	32117	32374							0.13000442096313236
RLLGTEFQV	9	Unmodified	_RLLGTEFQV_					0	0	0		chr5:33964016-33984199|414|54.84|0.02|11.81|-|ENST00000510600|SLC45A2,SLC45A2;nc|ENSG00000164175|Q9UMX9-4|SLC45A2;nc|ENSG00000164175|Q9UMX9-3|SLC45A2;ENSG00000164175|ENST00000296589|SLC45A2	chr5:33964016-33984199|414|54.84|0.02|11.81|-|ENST00000510600|SLC45A2,SLC45A2	chr5:33964016-33984199|414|54.84|0.02|11.81|-|ENST00000510600|SLC45A2,SLC45A2	MSMS	A375_MHC_IP_R2	2	531.797607421875	2	531.800749	1061.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.513	1	80.257	79.757	80.757	0.74474								0	0	0	0.15404	1	30174	30174		20.415	5.5763	1				43864	485	32118	32375	42794	42794					0.058614318515992636
RLLHEMILV	9	Unmodified	_RLLHEMILV_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	A375_MHC_IP_R2	2	375.626953125	3	375.226722	1122.65834	0.30595	0.0001148	-0.16808	-6.3067E-05	0.13787	5.1734E-05	375.2266679635881	76.605	0.50892	77.345	77.095	77.604	0.74052					16	9	2	0	0	0	0.67787	1	29111	29111		8.9762	4.0792	1	1629400			43865	4177	32119	32376	42795	42795					0.10191228284611498
RLLHKPVTL	9	Unmodified	_RLLHKPVTL_					0	0	0		ENSG00000170500|ENST00000393437|LONRF2	ENSG00000170500|ENST00000393437|LONRF2	ENSG00000170500|ENST00000393437|LONRF2	MULTI-SECPEP	A375_MHC_IP_R1	1	358.9485168457031	3	359.569476	1075.6866	0.17167	6.1729E-05	-0.064724	-2.3273E-05	0.10695	3.8456E-05	359.56912671936027	33.61	0.35461	33.61	33.393	33.748	0					16	6	3	0	0	0	0.79429	1	11006	11006		4.1895	2.1035	1	1311100			43866	7513	32120	32377	42796	42796					0.15178294256224945
RLLILKKRRRF	11	Unmodified	_RLLILKKRRRF_					0	0	0			REV__ENST00000395954.3_1_20:52773958-52774087:-|nuORF	REV__ENST00000395954.3_1_20:52773958-52774087:-|nuORF	MSMS	A375_MHC_IP_R2	2	750.4105224609375	2	750.012079	1498.0096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.172	1	86.905	86.405	87.405	0.733								0	0	0	0.16353	1	32769	32769		0.35063	0.043601	1		+		43867	24332	32121	32378	42797	42797					0.2805202537506375
RLLIPVRTV	9	Unmodified	_RLLIPVRTV_					0	0	0		MYCBP2|p.V4031Lfs*3|1|0.12|ENSG00000005810|chr13:77067831-77067832|-/AACAG|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.V4031Lfs*3|1|0.12|ENSG00000005810|chr13:77067831-77067832|-/AACAG|frameshift_variant	MYCBP2|p.V4031Lfs*3|1|0.12|ENSG00000005810|chr13:77067831-77067832|-/AACAG|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	356.6290283203125	3	356.241359	1065.70225	-0.42466	-0.00015128	-0.22174	-7.8993E-05	-0.6464	-0.00023027	356.2412122826152	29.196	0.35664	29.196	28.996	29.353	0					15	6	3	0	0	0	0.64971	1	9141	9141		11.495	3.0504	1	2569600			43868	899	32122	32379	42798	42798					0.1720258077325525
RLLIPVRTV	9	Unmodified	_RLLIPVRTV_					0	0	0		MYCBP2|p.V4031Lfs*3|1|0.12|ENSG00000005810|chr13:77067831-77067832|-/AACAG|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.V4031Lfs*3|1|0.12|ENSG00000005810|chr13:77067831-77067832|-/AACAG|frameshift_variant	MYCBP2|p.V4031Lfs*3|1|0.12|ENSG00000005810|chr13:77067831-77067832|-/AACAG|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	356.6289367675781	3	356.241359	1065.70225	-0.57179	-0.0002037	0.19865	7.0768E-05	-0.37314	-0.00013293	356.24130158652076	28.326	0.40624	29.005	28.757	29.163	0.67857					16	7	3	0	0	0	0.64971	1	9758	9758		11.495	1.3441	1	2876600			43869	899	32122	32379	42799	42799					0.1720258077325525
RLLKKLKKGK	10	Unmodified	_RLLKKLKKGK_					0	0	0		ENSG00000111364|ENST00000238146|DDX55;nc|ENSG00000111364|Q8NHQ9-2|DDX55	ENSG00000111364|ENST00000238146|DDX55	ENSG00000111364|ENST00000238146|DDX55	MSMS	A375_MHC_IP_R1	1	606.6668090820312	2	606.43735	1210.86015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.47	1	102.47	101.97	102.97	0								0	0	0	0.15642	1	37659	37659		0	0	1				43870	2989	32123	32380	42800	42800					0.2631508003248655
RLLKSKLYL	9	Unmodified	_RLLKSKLYL_					0	0	0		ENST00000539708.5_1_12:16513351-16516972:+|nuORF;ENSG00000008394|ENST00000396210|MGST1	ENST00000539708.5_1_12:16513351-16516972:+|nuORF	ENST00000539708.5_1_12:16513351-16516972:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	378.9851989746094	3	378.585015	1132.73321	0.28231	0.00010688	-0.16735	-6.3354E-05	0.11497	4.3525E-05	378.5849067980949	43.535	0.60614	44.307	44.028	44.634	0.7724					31	11	3	0	0	0	0.016157	1	16187	16187		88.364	33.129	1	23144000			43871	960	32124	32381	42801	42801					0.17215734087494639
RLLLAIFI	8	Unmodified	_RLLLAIFI_					0	0	0			REV__ENST00000468559.5_1_20:30142550-30156957:+|nuORF	REV__ENST00000468559.5_1_20:30142550-30156957:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	959.0447998046875	1	958.6448	957.637523	0.345	0.00033073	-0.051132	-4.9018E-05	0.29387	0.00028172	958.6447675581879	22.561	1.7757	22.561	22.164	23.94	0					44	34	2	0	0	0	0.972	1	6010	6010		0	0	1	3890600	+		43872	17156	32125	32382	42802	42802					0.15701005967252968
RLLLAIFI	8	Unmodified	_RLLLAIFI_					0	0	0			REV__ENST00000468559.5_1_20:30142550-30156957:+|nuORF	REV__ENST00000468559.5_1_20:30142550-30156957:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	959.5448608398438	1	958.6448	957.637523	-0.43994	-0.00042175	-0.1297	-0.00012434	-0.56964	-0.00054608	958.6446366567302	24.177	1.7822	24.821	24.245	26.028	0.64368					44	34	2	0	0	0	0.77861	1	7853	7853		0	0	1	5172300	+		43873	17156	32125	32382	42803	42803					0.15701005967252968
RLLLAIFI	8	Unmodified	_RLLLAIFI_					0	0	0			REV__ENST00000468559.5_1_20:30142550-30156957:+|nuORF	REV__ENST00000468559.5_1_20:30142550-30156957:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	959.0449829101562	1	958.6448	957.637523	-0.43994	-0.00042175	-0.1297	-0.00012434	-0.56964	-0.00054608	958.6446366567302	24.177	1.7822	24.821	24.245	26.028	0.64368					44	34	2	0	0	0	0.972	1	8143	8143		0	0	1	5172300	+		43874	17156	32125	32382	42804	42804					0.15701005967252968
RLLLAIFI	8	Unmodified	_RLLLAIFI_					0	0	0			REV__ENST00000468559.5_1_20:30142550-30156957:+|nuORF	REV__ENST00000468559.5_1_20:30142550-30156957:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	958.6448	957.637523	-0.032772	-3.1417E-05	-0.30332	-0.00029077	-0.33609	-0.00032219	958.6445191311109	24.523	1.7233	24.523	23.991	25.714	0	-0.14907	-8.1085E-05	NaN	0	47	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7827900	+		43875	17156	32125	32382							0.15701005967252968
RLLLFIIAL	9	Unmodified	_RLLLFIIAL_					0	0	0			REV__ENST00000521844.1_1_8:8861643-8861781:+|nuORF	REV__ENST00000521844.1_1_8:8861643-8861781:+|nuORF	MSMS	A375_MHC_IP_R1	1	357.9309387207031	3	357.914472	1070.72159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.523	1	49.523	49.023	50.023	0								0	0	0	0.15486	1	17516	17516		0.26902	0	1		+		43876	25722	32126	32383	42805	42805					0.189055370641654
RLLLLLPLV	9	Unmodified	_RLLLLLPLV_					0	0	0		nc|ENSG00000204248|P13942-8|COL11A2;nc|ENSG00000204248|P13942-6|COL11A2;chr6:33185054-33186627|320|24.09|0.77|4.96|-|ENST00000374708|COL11A2,COL11A2;nc|ENSG00000204248|P13942-7|COL11A2;nc|ENSG00000204248|P13942-4|COL11A2;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2;nc|ENSG00000204248|P13942-9|COL11A2	nc|ENSG00000204248|P13942-8|COL11A2	nc|ENSG00000204248|P13942-8|COL11A2	MSMS	A375_MHC_IP_R1	1	525.4573364257812	2	525.375895	1048.73724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.183	1	69.183	68.683	69.683	0								0	0	0	0.15486	1	25100	25100		0.6015	0	1				43877	494	32127	32384	42806	42806					0.21481823581211756
RLLLLPLLL	9	Unmodified	_RLLLLPLLL_					0	0	0		ENST00000581744.1_1_17:80274441-80275395:-|nuORF;PILRB|p.P4L|1|0.11|ENSG00000121716|chr7:100358313-100358313|C/T|missense_variant;ENST00000578509.1_1_17:80274885-80275395:-|nuORF;ENST00000587837.5_1_19:36398461-36399157:-|nuORF;ENST00000585626.1_1_19:36398336-36399184:-|nuORF;nc|ENSG00000011600|O43914-3|TYROBP;nc|ENSG00000011600|O43914-2|TYROBP;ENSG00000011600|ENST00000262629|TYROBP;ENSG00000173762|ENST00000312648|CD7;ENSG00000065923|ENST00000616978|SLC9A7;nc|ENSG00000065923|Q96T83|SLC9A7;ENSG00000123131|ENST00000379341|PRDX4;ENST00000495599.1_1_X:23685681-23689545:+|nuORF	ENST00000581744.1_1_17:80274441-80275395:-|nuORF;ENSG00000065923|ENST00000616978|SLC9A7;ENSG00000123131|ENST00000379341|PRDX4;ENST00000495599.1_1_X:23685681-23689545:+|nuORF	ENSG00000123131|ENST00000379341|PRDX4	MULTI-MSMS	A375_MHC_IP_R1	1	532.78369140625	2	532.38372	1062.75289	-0.87973	-0.00046836	0.56396	0.00030025	-0.31577	-0.00016811	532.3838641943737	133.13	0.25546	133.13	133	133.25	0					7	4	2	0	0	0	0.35581	1	51353	51353		26.884	0	1	4137700			43878	1396;3827;13686;12710	32128	32385	42807	42807					0.22402110098278172
RLLLLPLLL	9	Unmodified	_RLLLLPLLL_					0	0	0		ENST00000581744.1_1_17:80274441-80275395:-|nuORF;PILRB|p.P4L|1|0.11|ENSG00000121716|chr7:100358313-100358313|C/T|missense_variant;ENST00000578509.1_1_17:80274885-80275395:-|nuORF;ENST00000587837.5_1_19:36398461-36399157:-|nuORF;ENST00000585626.1_1_19:36398336-36399184:-|nuORF;nc|ENSG00000011600|O43914-3|TYROBP;nc|ENSG00000011600|O43914-2|TYROBP;ENSG00000011600|ENST00000262629|TYROBP;ENSG00000173762|ENST00000312648|CD7;ENSG00000065923|ENST00000616978|SLC9A7;nc|ENSG00000065923|Q96T83|SLC9A7;ENSG00000123131|ENST00000379341|PRDX4;ENST00000495599.1_1_X:23685681-23689545:+|nuORF	ENST00000581744.1_1_17:80274441-80275395:-|nuORF;ENSG00000065923|ENST00000616978|SLC9A7;ENSG00000123131|ENST00000379341|PRDX4;ENST00000495599.1_1_X:23685681-23689545:+|nuORF	ENSG00000123131|ENST00000379341|PRDX4	MULTI-MSMS	A375_MHC_IP_R2	2	532.783203125	2	532.38372	1062.75289	-0.63838	-0.00033986	-0.4985	-0.00026539	-1.1369	-0.00060526	532.3835832450077	132.9	0.20358	133.07	132.94	133.15	0.16487					7	3	3	0	0	0	0.58047	1	52314	52314		15.847	0	1	4324000			43879	1396;3827;13686;12710	32128	32385	42808	42808					0.22402110098278172
RLLLPLLLKLL	11	Unmodified	_RLLLPLLLKLL_					0	0	0			REV__nc|ENSG00000184634|Q93074-3|MED12	REV__nc|ENSG00000184634|Q93074-3|MED12	MSMS	A375_MHC_IP_R1	1	652.9957275390625	2	652.973234	1303.93191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.08	1	105.08	104.58	105.58	0								0	0	0	0.1636	1	38579	38579		0	0	1		+		43880	21828	32129	32386	42809	42809					0.2921057466635375
RLLLPTPTV	9	Unmodified	_RLLLPTPTV_					0	0	0		nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	MULTI-SECPEP	A375_MHC_IP_R1	1	505.0917663574219	2	505.32386	1008.63317	-0.39794	-0.00020109	0.3709	0.00018743	-0.027041	-1.3664E-05	505.3237700943252	87.644	0.55822	87.644	87.34	87.898	0					19	10	3	0	0	0	0.63327	1	32131	32131		8.7454	3.0136	1	1694300			43881	1309	32130	32387	42810	42810					0.1291949675368187
RLLLPTPTV	9	Unmodified	_RLLLPTPTV_					0	0	0		nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	MULTI-SECPEP	A375_MHC_IP_R2	2	505.72357177734375	2	505.32386	1008.63317	-0.56735	-0.0002867	0.23771	0.00012012	-0.32964	-0.00016657	505.3240027632503	86.679	0.61368	87.412	87.049	87.662	0.733					16	11	2	0	0	0	0.71341	1	32961	32961		13.042	3.6593	1	1931300			43882	1309	32130	32387	42811	42811					0.1291949675368187
RLLLQPPP	8	Unmodified	_RLLLQPPP_					0	0	0			REV__ENST00000489591.5_1_17:39969413-39975983:+|nuORF	REV__ENST00000489591.5_1_17:39969413-39975983:+|nuORF	MSMS	A375_MHC_IP_R1	1	467.36248779296875	2	467.297645	932.580737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.269	1	35.269	34.769	35.769	0								0	0	0	0.16876	1	11717	11717		2.8892	0	1		+		43883	25372	32131	32388	42812	42812					0.11174958410742875
RLLLQTAEL	9	Unmodified	_RLLLQTAEL_					0	0	0		nc|ENSG00000156535|Q6YHK3-2|CD109;ENSG00000156535|ENST00000287097|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	MULTI-SECPEP	A375_MHC_IP_R1	1	529.2241821289062	2	528.824224	1055.63389	-0.68739	-0.00036351	0.53122	0.00028092	-0.15617	-8.2587E-05	528.8243714561553	80.777	0.35594	80.777	80.592	80.948	0					14	6	3	0	0	0	0.24324	1	29518	29518		53.833	19.431	1	2339800			43884	6199	32132	32389	42813	42813					0.10830291402749026
RLLLQTAEL	9	Unmodified	_RLLLQTAEL_					0	0	0		nc|ENSG00000156535|Q6YHK3-2|CD109;ENSG00000156535|ENST00000287097|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	MULTI-SECPEP	A375_MHC_IP_R2	2	529.2236328125	2	528.824224	1055.63389	-0.48057	-0.00025414	-0.75999	-0.0004019	-1.2406	-0.00065604	528.8237847720634	79.759	0.30737	80.503	80.35	80.657	0.74474					10	5	2	0	0	0	0.5212	1	30303	30303		32.786	6.5175	1	2070900			43885	6199	32132	32389	42814	42814					0.10830291402749026
RLLLRLLRTRQ	11	Unmodified	_RLLLRLLRTRQ_					0	0	0			REV__ENST00000564322.1_1_9:841703-894198:+|nuORF	REV__ENST00000564322.1_1_9:841703-894198:+|nuORF	MSMS	A375_MHC_IP_R1	1	719.7818603515625	2	719.478069	1436.94158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.41	1	143.41	142.91	143.91	0								0	0	0	0.1636	1	55016	55016		0	0	1		+		43886	26213	32133	32390	42815	42815					0.24059155724421544
RLLLRRERELT	11	Unmodified	_RLLLRRERELT_					0	0	0			REV__ENSG00000178395|ENST00000366875|CCDC185	REV__ENSG00000178395|ENST00000366875|CCDC185	MULTI-MSMS	A375_MHC_IP_R2	2	728.3504028320312	2	727.949341	1453.88413	-0.6434	-0.00046836	1.4428	0.0010503	0.79936	0.00058189	727.9507808564617	86.241	0.56256	86.974	86.794	87.357	0.733					17	10	2	0	0	0	0.7039	2	32807	32807;32820		15.248	8.6181	1	4000600	+		43887	21503	32134	32391	42816;42817	42816					0.17534268728195457
RLLLRRERELT	11	Unmodified	_RLLLRRERELT_					0	0	0			REV__ENSG00000178395|ENST00000366875|CCDC185	REV__ENSG00000178395|ENST00000366875|CCDC185	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	727.949341	1453.88413	-0.65631	-0.00047776	1.9369	0.00141	1.2806	0.00093221	727.9507570583052	87.16	0.50797	87.16	86.933	87.441	0	0.093234	0.00015119	NaN	15.248	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4587000	+		43888	21503	32134	32391							0.17534268728195457
RLLLRRERELT	11	Unmodified	_RLLLRRERELT_					0	0	0			REV__ENSG00000178395|ENST00000366875|CCDC185	REV__ENSG00000178395|ENST00000366875|CCDC185	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	727.949341	1453.88413	-0.6434	-0.00046836	1.4428	0.0010503	0.79936	0.00058189	727.9507808564617	86.241	0.56256	86.974	86.794	87.357	0.733	-0.093234	-0.00056823	NaN	15.248	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4000600	+		43889	21503	32134	32391							0.17534268728195457
RLLLVGGL	8	Unmodified	_RLLLVGGL_					0	0	0		ENST00000557385.1_1_X:119384635-119386530:+|nuORF;ENST00000326624.2_1_X:119384635-119387278:+|nuORF	ENST00000557385.1_1_X:119384635-119386530:+|nuORF	ENST00000557385.1_1_X:119384635-119386530:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	420.1238098144531	2	420.786913	839.559273	-0.084258	-3.5455E-05	-0.1568	-6.5979E-05	-0.24106	-0.00010143	420.78655127348196	103.23	0.35627	103.99	103.74	104.09	0.76428					8	6	2	0	0	0	0.972	1	39017	39017		5.2307	0	1	285300			43890	10735	32135	32392	42818	42818					0.13307573382030569
RLLLVLLLLP	10	Unmodified	_RLLLVLLLLP_					0	0	0		nc|ENSG00000114948|O75077-3|ADAM23;nc|ENSG00000114948|O75077-2|ADAM23;ENSG00000114948|ENST00000264377|ADAM23	nc|ENSG00000114948|O75077-3|ADAM23	nc|ENSG00000114948|O75077-3|ADAM23	MSMS	A375_MHC_IP_R1	1	581.8021850585938	2	581.917927	1161.8213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.24	1	107.24	106.74	107.74	0								0	0	0	0.15628	1	39351	39351		0.45834	0	1				43891	3260	32136	32393	42819	42819					0.2468635467812419
RLLNFDTEL	9	Unmodified	_RLLNFDTEL_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	A375_MHC_IP_R1	1	561.397216796875	2	560.803488	1119.59242	-0.61625	-0.00034559	0.34172	0.00019164	-0.27453	-0.00015396	560.8036783888798	94.961	0.45877	94.961	94.752	95.211	0					14	8	2	0	0	0	0.37338	1	34964	34964		27.629	12.791	1	1209000			43892	7831	32137	32394	42820	42820					0.03741110643431966
RLLNFQRQL	9	Unmodified	_RLLNFQRQL_					0	0	0		SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant;nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4	SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant;nc|ENSG00000127616|P51532-5|SMARCA4	SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	396.97186279296875	3	396.571768	1186.69348	0.014475	5.7404E-06	0.057585	2.2837E-05	0.07206	2.8577E-05	396.5717753929812	56.161	0.50608	56.161	55.891	56.397	0					20	9	3	0	0	0	0.024574	2	20111	20111;20178		79.596	54.715	1	3347300			43893	1714;4100	32138	32395	42821;42822	42821					0.107596071368107
RLLNFQRQL	9	Unmodified	_RLLNFQRQL_					0	0	0		SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant;nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4	SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant;nc|ENSG00000127616|P51532-5|SMARCA4	SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	396.9718933105469	3	396.571768	1186.69348	-0.25408	-0.00010076	0.19204	7.6159E-05	-0.062031	-2.46E-05	396.5718617693182	55.003	0.56065	55.754	55.523	56.084	0.75075					21	10	3	0	0	0	0.017727	1	20796	20796		86.332	62.531	1	5034300			43894	1714;4100	32138	32395	42823	42823					0.107596071368107
RLLNILMQL	9	Unmodified	_RLLNILMQL_					0	0	0		nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1	MULTI-SECPEP	A375_MHC_IP_R1	1	556.707763671875	2	557.344269	1112.67399	-0.095603	-5.3284E-05	-0.92774	-0.00051707	-1.0233	-0.00057036	557.343522352032	127.19	0.15425	127.19	127.06	127.22	0					4	2	2	0	0	0	0.4261	1	48666	48666		37.974	19.828	1	5618800			43895	2352;6011	32139	32396	42824	42824					0.12215514801687277
RLLPALASV	9	Unmodified	_RLLPALASV_					0	0	0		nc|ENSG00000243989|Q03154-2|ACY1;nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1	nc|ENSG00000243989|Q03154-2|ACY1	nc|ENSG00000243989|Q03154-2|ACY1	MULTI-MSMS	A375_MHC_IP_R1	1	470.7028503417969	2	470.302927	938.591301	-0.28904	-0.00013594	-0.04085	-1.9212E-05	-0.32989	-0.00015515	470.3028066868341	88.337	0.66261	88.337	88.052	88.714	0					29	12	3	0	0	0	0.040308	1	32391	32391		68.081	28.123	1	9579400			43896	9816	32140	32397	42825	42825					0.11954941065175717
RLLPALASV	9	Unmodified	_RLLPALASV_					0	0	0		nc|ENSG00000243989|Q03154-2|ACY1;nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1	nc|ENSG00000243989|Q03154-2|ACY1	nc|ENSG00000243989|Q03154-2|ACY1	MULTI-MSMS	A375_MHC_IP_R2	2	470.70245361328125	2	470.302927	938.591301	-0.49161	-0.0002312	0.018825	8.8536E-06	-0.47278	-0.00022235	470.30289668611664	87.231	0.70575	87.964	87.662	88.368	0.733					28	13	3	0	0	0	0.026268	1	33146	33146		78.149	29.804	1	8706300			43897	9816	32140	32397	42826	42826					0.11954941065175717
RLLPDLDEV	9	Unmodified	_RLLPDLDEV_					0	0	0		nc|ENSG00000151136|A6QL63-2|ABTB3;nc|ENSG00000151136|A6QL63-3|ABTB3;ENSG00000151136|ENST00000280758|ABTB3	nc|ENSG00000151136|A6QL63-2|ABTB3	nc|ENSG00000151136|A6QL63-2|ABTB3	MULTI-SECPEP	A375_MHC_IP_R1	1	535.697998046875	2	535.298039	1068.58152	-0.62414	-0.0003341	0.40977	0.00021935	-0.21438	-0.00011475	535.2982889247271	91.937	0.45479	91.937	91.706	92.16	0					14	8	2	0	0	0	0.71071	1	33789	33789		14.405	11.907	1	2045100			43898	5881	32141	32398	42827	42827					0.04997708269138457
RLLPDLDEV	9	Unmodified	_RLLPDLDEV_					0	0	0		nc|ENSG00000151136|A6QL63-2|ABTB3;nc|ENSG00000151136|A6QL63-3|ABTB3;ENSG00000151136|ENST00000280758|ABTB3	nc|ENSG00000151136|A6QL63-2|ABTB3	nc|ENSG00000151136|A6QL63-2|ABTB3	MULTI-SECPEP	A375_MHC_IP_R2	2	535.6979370117188	2	535.298039	1068.58152	-0.72344	-0.00038726	0.74196	0.00039717	0.018519	9.9133E-06	535.2982272432718	91.173	0.86243	91.908	91.514	92.376	0.7345					22	16	2	0	0	0	0.54812	1	34674	34674		31.268	12.011	1	1993800			43899	5881	32141	32398	42828	42828					0.04997708269138457
RLLPKVQEV	9	Unmodified	_RLLPKVQEV_					0	0	0		ENSG00000186193|ENST00000409687|SAPCD2	ENSG00000186193|ENST00000409687|SAPCD2	ENSG00000186193|ENST00000409687|SAPCD2	MULTI-SECPEP	A375_MHC_IP_R1	1	541.739990234375	2	541.340041	1080.66553	-0.037755	-2.0438E-05	-0.57776	-0.00031276	-0.61551	-0.0003332	541.339676872015	44.883	0.60837	44.883	44.575	45.183	0					30	11	4	0	0	0	0.061442	1	15688	15688		82.529	55.646	1	13353000			43900	8728	32142	32399	42829	42829					0.1284228415670441
RLLPKVQEV	9	Unmodified	_RLLPKVQEV_					0	0	0		ENSG00000186193|ENST00000409687|SAPCD2	ENSG00000186193|ENST00000409687|SAPCD2	ENSG00000186193|ENST00000409687|SAPCD2	MULTI-SECPEP	A375_MHC_IP_R2	2	541.739501953125	2	541.340041	1080.66553	-0.62945	-0.00034075	-0.024894	-1.3476E-05	-0.65434	-0.00035422	541.3399054022499	43.839	0.5544	44.608	44.38	44.934	0.7691					30	10	4	0	0	0	0.10362	1	16334	16334		55.503	31.482	1	13799000			43901	8728	32142	32399	42830	42830					0.1284228415670441
RLLQDSVDFSL	11	Unmodified	_RLLQDSVDFSL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R1	1	647.2637329101562	2	646.845884	1291.67722	-0.30551	-0.00019762	0.47625	0.00030806	0.17074	0.00011044	647.3470393953876	101.71	0.30138	101.71	101.55	101.85	0					8	5	2	0	0	0	0.48838	1	37401	37401		32.037	7.0465	1	880320			43902	1093	32143	32400	42831	42831					0.043044363893841364
RLLQEQLDE	9	Unmodified	_RLLQEQLDE_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000554557.5_1_14:68248216-68272009:-|nuORF;nc|ENSG00000072121|Q68DK2-4|ZFYVE26;ENST00000557407.1_1_14:68264347-68282710:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MSMS	A375_MHC_IP_R1	1	381.8094482421875	3	381.87166	1142.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.904	1	18.904	18.404	19.404	0								0	0	0	0.15486	1	4539	4539		0.26902	0	1				43903	1530	32144	32401	42832	42832					0.02755905292474381
RLLQLHTLI	9	Unmodified	_RLLQLHTLI_					0	0	0			REV__nc|ENSG00000184216|P51617-4|IRAK1	REV__nc|ENSG00000184216|P51617-4|IRAK1	MULTI-SECPEP	A375_MHC_IP_R2	2	368.9695739746094	3	369.572998	1105.69716	-0.0078389	-2.897E-06	-2.3776	-0.00087871	-2.3855	-0.00088161	369.57195871547276	49.587	0.15082	50.344	50.247	50.398	0.75737					4	2	2	0	0	0	0.78348	1	18601	18601		4.897	0.36815	1	302520	+		43904	21804	32145	32402	42833	42833					0.14854276910659792
RLLQQNTQL	9	Unmodified	_RLLQQNTQL_					0	0	0		ENSG00000090447|ENST00000204517|TFAP4;ENST00000575300.1_1_16:4312060-4322792:-|nuORF	ENSG00000090447|ENST00000204517|TFAP4	ENSG00000090447|ENST00000204517|TFAP4	MULTI-SECPEP	A375_MHC_IP_R1	1	557.7219848632812	2	557.32238	1112.63021	-0.43296	-0.0002413	-0.35446	-0.00019755	-0.78742	-0.00043885	557.3221848291665	43.425	0.40598	43.425	43.249	43.655	0					13	7	2	0	0	0	0.061442	1	15109	15109		82.529	32.596	1	4833700			43905	1952	32146	32403	42834	42834					0.07839621628886562
RLLQQNTQL	9	Unmodified	_RLLQQNTQL_					0	0	0		ENSG00000090447|ENST00000204517|TFAP4;ENST00000575300.1_1_16:4312060-4322792:-|nuORF	ENSG00000090447|ENST00000204517|TFAP4	ENSG00000090447|ENST00000204517|TFAP4	MULTI-MSMS	A375_MHC_IP_R2	2	558.4627075195312	2	557.32238	1112.63021	-0.69147	-0.00038537	-0.71366	-0.00039774	-1.4051	-0.00078311	557.3219846872165	42.536	0.35582	43.308	43.167	43.523	0.7724					14	6	3	0	0	0	0.67332	1	15801	15801		9.3831	3.6513	1	3214900			43906	1952	32146	32403	42835	42835					0.07839621628886562
RLLQQVSQI	9	Unmodified	_RLLQQVSQI_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A;ENST00000369144.7_1_10:120819204-120820315:-|nuORF	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-SECPEP	A375_MHC_IP_R2	2	542.6592407226562	2	542.827298	1083.64004	-1.1791	-0.00064004	0.29336	0.00015924	-0.88573	-0.0004808	542.8272892017636	59.932	0.40374	60.679	60.4	60.804	0.74714					13	7	2	0	0	0	0.55534	1	22648	22648		41.84	16.44	1	2155200			43907	2743	32147	32404	42836	42836					0.10156809634281672
RLLQSNPVL	9	Unmodified	_RLLQSNPVL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-SECPEP	A375_MHC_IP_R1	1	520.7164306640625	2	520.316566	1038.61858	-0.43153	-0.00022453	0.25937	0.00013495	-0.17216	-8.9577E-05	520.3166668260345	63.079	0.51287	63.079	62.813	63.326	0					23	9	3	0	0	0	0.31606	1	22764	22764		39.95	10.868	1	8788800			43908	9204	32148	32405	42837	42837					0.10081424605550637
RLLQSNPVL	9	Unmodified	_RLLQSNPVL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	A375_MHC_IP_R2	2	520.7155151367188	2	520.316566	1038.61858	-0.86957	-0.00045245	-0.35588	-0.00018517	-1.2255	-0.00063762	520.3163386474281	62.044	0.86232	62.787	62.471	63.333	0.74263					35	16	4	0	0	0	0.070818	1	23487	23487		56.177	8.4284	1	9517400			43909	9204	32148	32405	42838	42838					0.10081424605550637
RLLRGRRHQ	9	Unmodified	_RLLRGRRHQ_					0	0	0			REV__ENST00000577066.2_1_17:79006875-79007058:-|nuORF	REV__ENST00000577066.2_1_17:79006875-79007058:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	596.7686157226562	2	596.368321	1190.72209	-0.75075	-0.00044772	1.0316	0.00061524	0.28088	0.00016751	596.3692325527659	140.15	0.61435	140.15	139.83	140.44	0					44	11	5	0	0	0	0.7724	1	53794	53794		0.52476	0	1	24336000	+		43910	26316	32149	32406	42839	42839					0.1343576955662229
RLLRGRRHQ	9	Unmodified	_RLLRGRRHQ_					0	0	0			REV__ENST00000577066.2_1_17:79006875-79007058:-|nuORF	REV__ENST00000577066.2_1_17:79006875-79007058:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	596.368321	1190.72209	-0.75075	-0.00044772	1.0316	0.00061524	0.28088	0.00016751	596.3692325527659	140.15	0.61435	140.15	139.83	140.44	0	0.081775	0.00026662	NaN	0.52476	44	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24336000	+		43911	26316	32149	32406							0.1343576955662229
RLLRGRRHQ	9	Unmodified	_RLLRGRRHQ_					0	0	0			REV__ENST00000577066.2_1_17:79006875-79007058:-|nuORF	REV__ENST00000577066.2_1_17:79006875-79007058:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	596.368321	1190.72209	-0.37369	-0.00022286	0.5543	0.00033057	0.18062	0.00010771	596.3688502558402	139.93	0.56351	139.99	139.8	140.37	0.059906	-0.081775	-0.00030271	NaN	0.52476	35	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25775000	+		43912	26316	32149	32406							0.1343576955662229
RLLRKRLKRLH	11	Unmodified	_RLLRKRLKRLH_					0	0	0			REV__ENSG00000130203|ENST00000252486|APOE	REV__ENSG00000130203|ENST00000252486|APOE	MSMS	A375_MHC_IP_R2	2	744.8121948242188	2	745.007328	1488.0001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.41	1	102.17	101.67	102.67	0.76428								0	0	0	0.1636	1	38439	38439		0	0	1		+		43913	18525	32150	32407	42840	42840					0.2756225708958482
RLLRRRPVSWS	11	Unmodified	_RLLRRRPVSWS_					0	0	0		ENST00000353442.9_1_7:156685696-156685861:-|nuORF	ENST00000353442.9_1_7:156685696-156685861:-|nuORF	ENST00000353442.9_1_7:156685696-156685861:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	713.8294677734375	2	713.431119	1424.84768	-0.94039	-0.0006709	0.090387	6.4485E-05	-0.85	-0.00060642	713.4305336188311	148.99	2.2828	148.99	147.72	150	0					232	79	5	0	0	0	0.73822	1	56846	56846		1.0715	1.0715	1	1604400			43914	10933	32151	32408	42841	42841					0.1522543662215412
RLLRSDFCP	9	Unmodified	_RLLRSDFCP_					0	0	0		nc|ENSG00000160606|Q96CP7-2|TLCD1;ENSG00000160606|ENST00000292090|TLCD1	nc|ENSG00000160606|Q96CP7-2|TLCD1	nc|ENSG00000160606|Q96CP7-2|TLCD1	MULTI-SECPEP	A375_MHC_IP_R2	2	368.9450378417969	3	369.530693	1105.57025	-0.056604	-2.0917E-05	-0.99111	-0.00036625	-1.0477	-0.00038716	369.5301775148286	33.4	0.30567	34.152	33.992	34.298	0.75225					7	5	2	0	0	0	0.79191	1	11898	11898		4.1895	0.31317	1	1253800			43915	6427	32152	32409	42842	42842					0.021686076940113708
RLLSFVVLA	9	Unmodified	_RLLSFVVLA_					0	0	0		chr1:156020167-156020337|99|13.11|0.31|5.39|-|0|SSR2,None|1;ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENSG00000163479|ENST00000295702|SSR2	chr1:156020167-156020337|99|13.11|0.31|5.39|-|0|SSR2,None|1	chr1:156020167-156020337|99|13.11|0.31|5.39|-|0|SSR2,None|1	MULTI-MSMS	A375_MHC_IP_R1	1	509.725830078125	2	509.326402	1016.63825	-0.23611	-0.00012026	-0.25371	-0.00012922	-0.48982	-0.00024948	509.32620726855026	117.34	2.4317	117.34	117.06	119.49	0					99	47	4	0	0	0	0.06083	1	43030	43030		60.074	6.4983	1	325640000			43916	391	32153	32410	42843	42843					0.1305980061632681
RLLSFVVLA	9	Unmodified	_RLLSFVVLA_					0	0	0		chr1:156020167-156020337|99|13.11|0.31|5.39|-|0|SSR2,None|1;ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENSG00000163479|ENST00000295702|SSR2	chr1:156020167-156020337|99|13.11|0.31|5.39|-|0|SSR2,None|1	chr1:156020167-156020337|99|13.11|0.31|5.39|-|0|SSR2,None|1	MULTI-MSMS	A375_MHC_IP_R2	2	509.7267150878906	2	509.326402	1016.63825	-0.58098	-0.00029591	-0.73899	-0.00037639	-1.32	-0.0006723	509.3259585527184	116.28	1.7792	116.94	116.51	118.29	0.65961					88	34	4	0	0	0	0.12771	1	44092	44092		45.7	13.583	1	368700000			43917	391	32153	32410	42844	42844					0.1305980061632681
RLLSKIHNV	9	Unmodified	_RLLSKIHNV_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	A375_MHC_IP_R1	1	361.2952880859375	3	360.560981	1078.66111	-0.015496	-5.5871E-06	-0.022871	-8.2463E-06	-0.038366	-1.3833E-05	360.89528677170904	27.739	0.40357	27.739	27.533	27.937	0					18	7	3	0	0	0	0.30259	1	8482	8482		30.431	18.257	1	4246000			43918	3365	32154	32411	42845	42845					0.12492819733802207
RLLSKIHNV	9	Unmodified	_RLLSKIHNV_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	A375_MHC_IP_R2	2	360.9605407714844	3	360.560981	1078.66111	-0.50035	-0.00018041	0.13637	4.9171E-05	-0.36398	-0.00013124	360.5609638385219	26.753	0.45984	27.413	27.212	27.671	0.65992					18	8	3	0	0	0	0.135	1	9076	9076		44.392	29.143	1	4126600			43919	3365	32154	32411	42846	42846					0.12492819733802207
RLLSTSPAL	9	Unmodified	_RLLSTSPAL_					0	0	0		nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	MULTI-MSMS	A375_MHC_IP_R1	1	479.6900939941406	2	479.290017	956.565481	-0.51526	-0.00024696	0.22707	0.00010883	-0.28819	-0.00013812	479.2900731307702	58.696	0.71272	58.696	58.43	59.143	0					32	13	3	0	0	0	0.037683	1	21060	21060		69.105	10.426	1	13317000			43920	1056	32155	32412	42847	42847					0.0854604682289164
RLLSTSPAL	9	Unmodified	_RLLSTSPAL_					0	0	0		nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	MULTI-MSMS	A375_MHC_IP_R2	2	479.6893615722656	2	479.290017	956.565481	-0.85542	-0.00040999	-0.047109	-2.2579E-05	-0.90252	-0.00043257	479.289932651382	57.689	0.65915	58.438	58.12	58.779	0.74894					33	12	4	0	0	0	0.037683	1	21780	21780		69.105	0	1	16977000			43921	1056	32155	32412	42848	42848					0.0854604682289164
RLLWKLVILLP	11	Unmodified	_RLLWKLVILLP_					0	0	0		ENSG00000134115|ENST00000446702|CNTN6	ENSG00000134115|ENST00000446702|CNTN6	ENSG00000134115|ENST00000446702|CNTN6	MSMS	A375_MHC_IP_R2	2	682.4418334960938	2	682.463033	1362.91151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.31	1	110.05	109.55	110.55	0.74684								0	0	0	0.1636	1	41253	41253		0	0	1				43922	4551	32156	32413	42849	42849					0.24457404006557226
RLMCGFNEIYK	11	Unmodified	_RLMCGFNEIYK_					0	0	0			REV__ENST00000316594.5_1_X:100668761-100668836:+|nuORF	REV__ENST00000316594.5_1_X:100668761-100668836:+|nuORF	MSMS	A375_MHC_IP_R2	2	458.6286315917969	3	458.561664	1372.66316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.131	1	19.734	19.234	20.234	0.60308								0	0	0	0.16265	1	5842	5842		2.2527	0	1		+		43923	23539	32157	32414	42850	42850					-0.008262556349336592
RLMEPIYLV	9	Unmodified	_RLMEPIYLV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-SECPEP	A375_MHC_IP_R1	1	567.7228393554688	2	567.323002	1132.63145	-0.3233	-0.00018341	0.38513	0.00021849	0.061832	3.5079E-05	567.3230833373009	103.26	0.66306	103.26	102.91	103.57	0					20	12	3	0	0	0	0.69381	1	37937	37937		20.415	1.1575	1	2307500			43924	7207	32158	32415	42851	42851					0.07044119673400928
RLMEPIYLV	9	Unmodified	_RLMEPIYLV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	A375_MHC_IP_R2	2	567.7223510742188	2	567.323002	1132.63145	-0.36409	-0.00020656	0.14929	8.4695E-05	-0.2148	-0.00012186	567.3230943827147	102.18	0.66004	102.94	102.67	103.33	0.76428					20	12	2	0	0	0	0.36834	1	38727	38727		26.268	0.86883	1	1988300			43925	7207	32158	32415	42852	42852					0.07044119673400928
RLMGSILGV	9	Unmodified	_RLMGSILGV_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11;ENST00000548943.1_1_12:106565027-106566212:+|nuORF	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MSMS	A375_MHC_IP_R1	1	473.68096923828125	2	473.281137	944.547722	-0.44843	-0.00021223	0.37575	0.00017784	-0.07268	-3.4398E-05	473.2812900927864	89.451	0.60911	89.451	89.171	89.78	0					27	11	3	0	0	0	0.054426	1	32841	32841		62.573	11.718	1	13409000			43926	2223	32159	32416	42853	42853					0.07323008296407352
RLMGSILGV	9	Unmodified	_RLMGSILGV_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11;ENST00000548943.1_1_12:106565027-106566212:+|nuORF	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MSMS	A375_MHC_IP_R2	2	473.6807861328125	2	473.281137	944.547722	-0.49777	-0.00023558	0.063165	2.9895E-05	-0.4346	-0.00020569	473.28113487570823	88.375	0.7589	89.107	88.825	89.584	0.7318					31	14	3	0	0	0	0.047602	1	33610	33610		65.235	4.8455	1	13525000			43927	2223	32159	32416	42854	42854					0.07323008296407352
RLMKELEEL	9	Unmodified	_RLMKELEEL_					0	0	0			REV__ENSG00000182791|ENST00000333861|CCDC87	REV__ENSG00000182791|ENST00000333861|CCDC87	MULTI-MSMS	A375_MHC_IP_R1	1	581.2208862304688	2	580.820824	1159.62709	-0.10346	-6.0094E-05	0.035987	2.0902E-05	-0.067476	-3.9191E-05	580.8210276117634	56.601	0.50799	56.601	56.347	56.855	0					22	9	3	0	0	0	0.053667	1	20266	20266		76.825	0	1	4083000	+		43928	21709	32160	32417	42855	42855					0.053666104598733
RLMKELEEL	9	Unmodified	_RLMKELEEL_					0	0	0			REV__ENSG00000182791|ENST00000333861|CCDC87	REV__ENSG00000182791|ENST00000333861|CCDC87	MULTI-SECPEP	A375_MHC_IP_R2	2	581.2207641601562	2	580.820824	1159.62709	-0.39321	-0.00022839	-0.35408	-0.00020566	-0.74729	-0.00043404	580.8207678233392	55.562	0.60749	56.312	55.933	56.54	0.75075					24	11	3	0	0	0	0.074405	1	20962	20962		79.596	0	1	8218800	+		43929	21709	32160	32417	42856	42856					0.053666104598733
RLMKELEEL	9	Unmodified	_RLMKELEEL_					0	0	0			REV__ENSG00000182791|ENST00000333861|CCDC87	REV__ENSG00000182791|ENST00000333861|CCDC87	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	580.820824	1159.62709	-0.10346	-6.0094E-05	0.035987	2.0902E-05	-0.067476	-3.9191E-05	580.8210276117634	56.601	0.50799	56.601	56.347	56.855	0	0.1446	0.00015579	NaN	76.825	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4083000	+		43930	21709	32160	32417							0.053666104598733
RLMKTLSKL	9	Unmodified	_RLMKTLSKL_					0	0	0		ENST00000440623.5_1_2:182756982-182781157:+|nuORF;nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2	ENST00000440623.5_1_2:182756982-182781157:+|nuORF	ENST00000440623.5_1_2:182756982-182781157:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	363.597412109375	3	363.898605	1088.67399	-0.38654	-0.00014066	-0.43237	-0.00015734	-0.81891	-0.000298	363.8984592406434	33.415	0.50768	34.167	33.891	34.399	0.75225					14	9	2	0	0	0	0.59098	1	11931	11931		20.581	4.0151	1	1126500			43931	4994	32161	32418	42857	42857					0.13319514801673904
RLMLQLQHD	9	Unmodified	_RLMLQLQHD_					0	0	0		ENSG00000164438|ENST00000296921|TLX3	ENSG00000164438|ENST00000296921|TLX3	ENSG00000164438|ENST00000296921|TLX3	MULTI-SECPEP	A375_MHC_IP_R1	1	384.61199951171875	3	385.209731	1152.60736	0.18026	6.9438E-05	0.16701	6.4332E-05	0.34727	0.00013377	385.2097090665028	37.818	0.40889	37.818	37.658	38.067	0					11	7	2	0	0	0	0.76827	1	12726	12726		7.1017	7.1017	1	2689200			43932	6839	32162	32419	42858	42858					0.037162792397793964
RLMNDMTAV	9	2 Oxidation (M)	_RLM(Oxidation (M))NDM(Oxidation (M))TAV_		RLM(1)NDM(1)TAV		RLM(66)NDM(66)TAV	0	0	2		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MSMS	A375_MHC_IP_R1	1	542.15185546875	2	541.752084	1081.48961	-0.83808	-0.00045403	-0.20393	-0.00011048	-1.042	-0.00056451	541.7520608240271	24.021	1.1137	24.021	23.635	24.749	0					75	21	5	0	0	0	0.04447	1	6931	6931		66.457	22.05	1	74271000			43933	3678	32163	32420	42859	42859		187;188			-0.047870414111912396
RLMNDMTAV	9	2 Oxidation (M)	_RLM(Oxidation (M))NDM(Oxidation (M))TAV_		RLM(1)NDM(1)TAV		RLM(52)NDM(52)TAV	0	0	2		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MSMS	A375_MHC_IP_R2	2	542.151611328125	2	541.752084	1081.48961	-1.1077	-0.00060011	-0.2958	-0.00016025	-1.4035	-0.00076036	541.7521421989481	23.53	1.2185	24.16	23.878	25.097	0.63014					76	23	4	0	0	0	0.094655	1	7834	7834		51.63	24.001	1	32946000			43934	3678	32163	32420	42860	42860		187;188			-0.047870414111912396
RLMNDMTAV	9	Unmodified	_RLMNDMTAV_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MSMS	A375_MHC_IP_R1	1	526.1815795898438	2	525.757169	1049.49979	-0.65407	-0.00034388	0.036054	1.8956E-05	-0.61801	-0.00032493	525.7571800654761	52.872	0.55698	52.872	52.592	53.148	0					17	10	2	0	0	0	0.4875	1	18882	18882		20.415	2.2796	1	15098000			43935	3678	32163	32421	42861	42861					-0.022984336859735777
RLMNDMTAV	9	Unmodified	_RLMNDMTAV_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MSMS	A375_MHC_IP_R2	2	526.1570434570312	2	525.757169	1049.49979	-0.80275	-0.00042205	-0.22988	-0.00012086	-1.0326	-0.00054291	525.756999901875	52.003	0.66068	52.755	52.473	53.134	0.75225					33	12	4	0	0	0	0.094655	2	19550	19550;19606		51.63	24.746	1	26556000			43936	3678	32163	32421	42862;42863	42862					-0.022984336859735777
RLMNETTAV	9	Oxidation (M)	_RLM(Oxidation (M))NETTAV_		RLM(1)NETTAV		RLM(69)NETTAV	0	0	1		ENSG00000170606|ENST00000304858|HSPA4;HSPA4L|p.I498Nfs*5|1|0.07|ENSG00000164070|chr4:127811548-127811549|-/TAACTTATTC|frameshift_variant;ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	A375_MHC_IP_R1	1	526.1656494140625	2	525.766049	1049.51754	-0.65291	-0.00034328	-0.055726	-2.9299E-05	-0.70864	-0.00037258	525.7660021853343	24.372	0.35353	24.372	24.194	24.547	0					18	6	4	0	0	0	0.037683	1	6905	6905		69.105	21.356	1	38051000			43937	7525	32164	32422	42864	42864		382			-0.005233951594846076
RLMNETTAV	9	Oxidation (M)	_RLM(Oxidation (M))NETTAV_		RLM(1)NETTAV		RLM(60)NETTAV	0	0	1		ENSG00000170606|ENST00000304858|HSPA4;HSPA4L|p.I498Nfs*5|1|0.07|ENSG00000164070|chr4:127811548-127811549|-/TAACTTATTC|frameshift_variant;ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	A375_MHC_IP_R1	1	526.1656494140625	2	525.766049	1049.51754	-0.52906	-0.00027816	-0.37576	-0.00019756	-0.90483	-0.00047573	525.7659218728551	24.723	1.1154	24.723	24.498	25.613	0					52	21	4	0	0	0	0.06083	1	7178	7178		60.074	20.124	1	57613000			43938	7525	32164	32422	42865	42865		382			-0.005233951594846076
RLMNETTAV	9	Oxidation (M)	_RLM(Oxidation (M))NETTAV_		RLM(1)NETTAV		RLM(60)NETTAV	0	0	1		ENSG00000170606|ENST00000304858|HSPA4;HSPA4L|p.I498Nfs*5|1|0.07|ENSG00000164070|chr4:127811548-127811549|-/TAACTTATTC|frameshift_variant;ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	A375_MHC_IP_R2	2	526.1654052734375	2	525.766049	1049.51754	-0.79361	-0.00041725	-0.7156	-0.00037624	-1.5092	-0.00079349	525.7658024174391	24.375	0.96396	25.019	24.705	25.668	0.64368					47	18	4	0	0	0	0.06083	2	7945	7945;8244		60.074	20.124	1	30451000			43939	7525	32164	32422	42866;42867	42866		382			-0.005233951594846076
RLMNETTAV	9	Unmodified	_RLMNETTAV_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;HSPA4L|p.I498Nfs*5|1|0.07|ENSG00000164070|chr4:127811548-127811549|-/TAACTTATTC|frameshift_variant;ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-SECPEP	A375_MHC_IP_R1	1	518.1680297851562	2	517.768591	1033.52263	-0.33187	-0.00017183	-0.7399	-0.00038309	-1.0718	-0.00055493	517.7682349085742	35.563	0.86563	35.563	35.319	36.184	0					35	16	3	0	0	0	0.11711	1	11812	11812		69.105	27.265	1	24542000			43940	7525	32164	32423	42868	42868					0.007209087031469608
RLMNETTAV	9	Unmodified	_RLMNETTAV_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;HSPA4L|p.I498Nfs*5|1|0.07|ENSG00000164070|chr4:127811548-127811549|-/TAACTTATTC|frameshift_variant;ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1679077148438	2	517.768591	1033.52263	-0.92373	-0.00047828	-0.3107	-0.00016087	-1.2344	-0.00063915	517.7684684378187	34.691	0.80797	35.455	35.222	36.03	0.76338					40	15	4	0	0	0	0.11711	1	12501	12501		69.105	29.155	1	42029000			43941	7525	32164	32423	42869	42869					0.007209087031469608
RLMPKVVRV	9	Unmodified	_RLMPKVVRV_					0	0	0		nc|ENSG00000188026|Q5EBL4-2|RILPL1;ENSG00000188026|ENST00000376874|RILPL1	nc|ENSG00000188026|Q5EBL4-2|RILPL1	nc|ENSG00000188026|Q5EBL4-2|RILPL1	MULTI-SECPEP	A375_MHC_IP_R1	1	366.9708251953125	3	366.570711	1096.6903	0.10053	3.6853E-05	0.45716	0.00016758	0.55769	0.00020443	366.57087282476476	37.938	0.4598	37.938	37.658	38.118	0					21	8	3	0	0	0	0.43207	1	12834	12834		27.223	19.614	1	5162400			43942	8874	32165	32424	42870	42870					0.14582640758430898
RLMPKVVRV	9	Unmodified	_RLMPKVVRV_					0	0	0		nc|ENSG00000188026|Q5EBL4-2|RILPL1;ENSG00000188026|ENST00000376874|RILPL1	nc|ENSG00000188026|Q5EBL4-2|RILPL1	nc|ENSG00000188026|Q5EBL4-2|RILPL1	MULTI-SECPEP	A375_MHC_IP_R2	2	366.97088623046875	3	366.570711	1096.6903	-0.37034	-0.00013576	0.29493	0.00010811	-0.075417	-2.7646E-05	366.5708477734233	36.705	0.50838	37.476	37.207	37.716	0.7709					21	9	3	0	0	0	0.33896	1	13393	13393		40.239	24.991	1	5503300			43943	8874	32165	32424	42871	42871					0.14582640758430898
RLMRAIFEI	9	Unmodified	_RLMRAIFEI_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	A375_MHC_IP_R1	1	383.95855712890625	3	383.558471	1147.65358	0.10166	3.8994E-05	-0.17976	-6.8949E-05	-0.078099	-2.9955E-05	383.5583850374797	84.349	0.45583	84.349	84.191	84.647	0					15	8	2	0	0	0	0.22013	1	30937	30937		36.506	36.506	1	1385100			43944	5456	32166	32425	42872	42872					0.0856634414187738
RLMRAIFEI	9	Unmodified	_RLMRAIFEI_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	A375_MHC_IP_R2	2	384.29266357421875	3	383.558471	1147.65358	-0.08199	-3.1448E-05	-0.21285	-8.164E-05	-0.29484	-0.00011309	383.89267140953433	83.284	0.66057	84.024	83.645	84.305	0.73962					19	12	2	0	0	0	0.60982	1	31685	31685		14.405	14.405	1	1872000			43945	5456	32166	32425	42873	42873					0.0856634414187738
RLMRAIFEI	9	Unmodified	_RLMRAIFEI_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	383.558471	1147.65358	-0.08199	-3.1448E-05	-0.21285	-8.164E-05	-0.29484	-0.00011309	383.89267140953433	83.284	0.66057	84.024	83.645	84.305	0.73962	-0.16237	-1.1988E-05	NaN	36.506	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1872000			43946	5456	32166	32425							0.0856634414187738
RLMYCYVPD	9	Unmodified	_RLMYCYVPD_					0	0	0		ENSG00000169006|ENST00000306928|NTSR2	ENSG00000169006|ENST00000306928|NTSR2	ENSG00000169006|ENST00000306928|NTSR2	MULTI-SECPEP	A375_MHC_IP_R1	1	387.2971496582031	3	387.180672	1158.52019	0.0080517	3.1175E-06	0.79001	0.00030588	0.79806	0.00030899	387.180996124989	25.762	1.3201	25.762	25.204	26.524	0					38	25	2	0	0	0	0.78798	1	7867	7867		4.5289	0	1	3900300			43947	7368	32167	32426	42874	42874					-0.05273263026174391
RLNEAAVTV	9	Unmodified	_RLNEAAVTV_					0	0	0		ENST00000566833.1_1_15:43477651-43481519:+|nuORF;nc|ENSG00000166946|O95273-2|CCNDBP1;ENSG00000166946|ENST00000300213|CCNDBP1	ENST00000566833.1_1_15:43477651-43481519:+|nuORF	ENST00000566833.1_1_15:43477651-43481519:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	487.1774597167969	2	486.777274	971.539994	-0.45936	-0.00022361	0.17656	8.5944E-05	-0.28281	-0.00013766	486.77735245247396	37.939	1.2743	37.939	37.658	38.933	0					53	24	5	0	0	0	0.016309	1	12790	12790		103.35	32.22	1	99019000			43948	7136	32168	32427	42875	42875					0.05308572300475589
RLNEAAVTV	9	Unmodified	_RLNEAAVTV_					0	0	0		ENST00000566833.1_1_15:43477651-43481519:+|nuORF;nc|ENSG00000166946|O95273-2|CCNDBP1;ENSG00000166946|ENST00000300213|CCNDBP1	ENST00000566833.1_1_15:43477651-43481519:+|nuORF	ENST00000566833.1_1_15:43477651-43481519:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	487.177001953125	2	486.777274	971.539994	-1.2332	-0.00060027	0.69621	0.0003389	-0.53695	-0.00026137	486.7775986233365	37.056	0.86422	37.827	37.615	38.479	0.7709					45	16	5	0	0	0	0.056023	1	13507	13507		85.642	3.7513	1	65661000			43949	7136	32168	32427	42876	42876					0.05308572300475589
RLNEKNYEL	9	Unmodified	_RLNEKNYEL_					0	0	0		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-MSMS	A375_MHC_IP_R1	1	590.2118530273438	2	589.811845	1177.60914	-0.24697	-0.00014567	-0.21025	-0.00012401	-0.45722	-0.00026968	589.8117531248184	28.669	0.4547	28.669	28.44	28.895	0					26	8	4	0	0	0	0.11715	1	8861	8861		47.594	7.6447	1	20305000			43950	1196	32169	32428	42877	42877					0.027436115293767216
RLNEKNYEL	9	Unmodified	_RLNEKNYEL_					0	0	0		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-SECPEP	A375_MHC_IP_R1	1	393.9440002441406	3	393.543655	1177.60914	0.12274	4.8304E-05	0.23517	9.2551E-05	0.35792	0.00014086	393.5437301196364	28.665	0.70914	28.665	28.44	29.149	0					38	13	4	0	0	0	0.27742	1	8858	8858		40.725	7.8271	1	50446000			43951	1196	32169	32428	42878	42878					0.027436115293767216
RLNEKNYEL	9	Unmodified	_RLNEKNYEL_					0	0	0		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-MSMS	A375_MHC_IP_R2	2	590.224365234375	2	589.811845	1177.60914	-0.62213	-0.00036694	0.17427	0.00010279	-0.44785	-0.00026415	589.8119722258427	27.934	0.50659	28.613	28.301	28.808	0.67857					20	9	3	0	0	0	0.10622	2	9569	9569;9612		49.554	17.249	1	20406000			43952	1196	32169	32428	42879;42880	42879					0.027436115293767216
RLNEKNYEL	9	Unmodified	_RLNEKNYEL_					0	0	0		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-SECPEP	A375_MHC_IP_R2	2	393.9439392089844	3	393.543655	1177.60914	-0.23715	-9.333E-05	0.52038	0.00020479	0.28322	0.00011146	393.5438679414198	27.935	0.7089	28.614	28.301	29.01	0.67857					37	13	4	0	0	0	0.27742	1	9611	9611		40.725	7.8271	1	47501000			43953	1196	32169	32428	42881	42881					0.027436115293767216
RLNERRRP	8	Unmodified	_RLNERRRP_					0	0	0			REV__ENST00000356408.3_1_7:2998169-3083371:-|nuORF	REV__ENST00000356408.3_1_7:2998169-3083371:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	366.2856140136719	3	366.219729	1095.63736	0.093342	3.4184E-05	0.76558	0.00028037	0.85893	0.00031456	366.2200554342563	27.229	0.61307	27.907	27.587	28.2	0.67857					21	11	3	0	0	0	0.77488	1	9266	9266		10.074	0	1	3745700	+		43954	23833	32170	32429	42882	42882					0.09336399020003228
RLNESTYVL	9	Unmodified	_RLNESTYVL_					0	0	0		nc|ENSG00000130589|Q9BYK8|HELZ2;ENST00000370082.1_1_20:62201547-62204491:-|nuORF	nc|ENSG00000130589|Q9BYK8|HELZ2	nc|ENSG00000130589|Q9BYK8|HELZ2	MULTI-SECPEP	A375_MHC_IP_R1	1	548.1958618164062	2	547.795663	1093.57677	-0.36554	-0.00020024	-0.28725	-0.00015735	-0.65279	-0.00035759	547.7955457910929	54.309	0.60441	54.309	53.912	54.516	0					25	11	3	0	0	0	0.5212	1	19344	19344		32.786	11.249	1	4762600			43955	14599	32171	32430	42883	42883					0.03372824126381602
RLNHFRWI	8	Unmodified	_RLNHFRWI_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;ENST00000309900.11_1_16:70928350-70955090:-|nuORF	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	A375_MHC_IP_R2	2	380.9150085449219	3	381.217437	1140.63048	-0.37405	-0.0001426	0.3899	0.00014864	0.015844	6.0401E-06	381.21762871803384	57.384	0.5614	58.133	57.865	58.427	0.74895					15	10	2	0	0	0	0.972	1	21647	21647		3.5965	0.31518	1	795150			43956	6242	32172	32431	42884	42884					0.06579086139413448
RLNKVIKSV	9	Unmodified	_RLNKVIKSV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;nc|ENSG00000167986|Q16531-2|DDB1;ENST00000451943.6_1_11:61067610-61070297:-|nuORF;ENST00000538470.2_1_11:61067610-61070684:-|nuORF;ENST00000545894.1_1_11:61069637-61069871:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	A375_MHC_IP_R1	1	353.301025390625	3	352.901114	1055.68151	0.019752	6.9705E-06	-0.15544	-5.4854E-05	-0.13569	-4.7884E-05	352.90106483106047	23.049	0.75944	23.049	22.723	23.483	0					25	14	3	0	0	0	0.024574	2	6225	6225;6287		73.196	23.669	1	23230000			43957	7247	32173	32432	42885;42886	42885					0.1558999039361879
RLNKVIKSV	9	Unmodified	_RLNKVIKSV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;nc|ENSG00000167986|Q16531-2|DDB1;ENST00000451943.6_1_11:61067610-61070297:-|nuORF;ENST00000538470.2_1_11:61067610-61070684:-|nuORF;ENST00000545894.1_1_11:61069637-61069871:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	A375_MHC_IP_R2	2	353.30096435546875	3	352.901114	1055.68151	-0.53888	-0.00019017	-0.13283	-4.6874E-05	-0.6717	-0.00023705	352.901046878612	19.903	0.91371	20.513	20.044	20.958	0.61029					43	17	3	0	0	0	0.2415	3	6056	6038;6056;6280		27.088	11.35	1	6414700			43958	7247	32173	32432	42887;42888;42889	42888					0.1558999039361879
RLNKVISEL	9	Unmodified	_RLNKVISEL_					0	0	0		ENST00000524867.1_1_11:810234-811767:+|nuORF;ENSG00000177600|ENST00000321153|RPLP2	ENST00000524867.1_1_11:810234-811767:+|nuORF	ENST00000524867.1_1_11:810234-811767:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	536.66015625	2	536.329673	1070.64479	-0.50832	-0.00027263	-0.0108	-5.7921E-06	-0.51912	-0.00027842	536.3296386823946	45.662	0.50666	45.662	45.434	45.941	0					22	9	3	0	0	0	0.38578	1	15966	15966		34.402	15.145	1	9640400			43959	8092	32174	32433	42890	42890					0.11229693777045213
RLNKVISEL	9	Unmodified	_RLNKVISEL_					0	0	0		ENST00000524867.1_1_11:810234-811767:+|nuORF;ENSG00000177600|ENST00000321153|RPLP2	ENST00000524867.1_1_11:810234-811767:+|nuORF	ENST00000524867.1_1_11:810234-811767:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	536.7291259765625	2	536.329673	1070.64479	-0.94282	-0.00050566	0.14983	8.036E-05	-0.79299	-0.0004253	536.3297379958707	44.596	0.6627	45.365	45.138	45.8	0.7691					22	12	3	0	0	0	0.41434	1	16630	16630		32.786	7.3864	1	10098000			43960	8092	32174	32433	42891	42891					0.11229693777045213
RLNNIRVLL	9	Unmodified	_RLNNIRVLL_					0	0	0		ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1	ENSG00000185722|ENST00000341657|ANKFY1	ENSG00000185722|ENST00000341657|ANKFY1	MULTI-SECPEP	A375_MHC_IP_R2	2	371.3083801269531	3	370.90838	1109.70331	0.29361	0.0001089	-0.22743	-8.4355E-05	0.066179	2.4547E-05	370.90829898976995	62.462	0.50766	63.205	62.976	63.484	0.74263					18	9	3	0	0	0	0.80332	1	23692	23692		0.96228	0.69326	1	2828300			43961	8687	32175	32434	42892	42892					0.152847951422018
RLNPHDIRL	9	Unmodified	_RLNPHDIRL_					0	0	0		nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000116514|Q6ZMZ0-2|RNF19B;ENSG00000116514|ENST00000235150|RNF19B;nc|ENSG00000116514|Q6ZMZ0|RNF19B	nc|ENSG00000116514|Q6ZMZ0-3|RNF19B	nc|ENSG00000116514|Q6ZMZ0-3|RNF19B	MULTI-MSMS	A375_MHC_IP_R1	1	378.9560852050781	3	378.556118	1132.64652	0.1265	4.7889E-05	-0.044496	-1.6844E-05	0.082009	3.1045E-05	378.556068916154	36.46	0.45855	36.46	36.236	36.695	0					19	8	3	0	0	0	0.024772	1	12196	12196		79.427	26.023	1	5249700			43962	3402	32176	32435	42893	42893					0.08550747585650242
RLNPHDIRL	9	Unmodified	_RLNPHDIRL_					0	0	0		nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000116514|Q6ZMZ0-2|RNF19B;ENSG00000116514|ENST00000235150|RNF19B;nc|ENSG00000116514|Q6ZMZ0|RNF19B	nc|ENSG00000116514|Q6ZMZ0-3|RNF19B	nc|ENSG00000116514|Q6ZMZ0-3|RNF19B	MULTI-MSMS	A375_MHC_IP_R2	2	378.9561462402344	3	378.556118	1132.64652	-0.12543	-4.7481E-05	-0.21753	-8.2346E-05	-0.34295	-0.00012983	378.55605846009024	35.343	0.45465	36.107	35.878	36.333	0.76338					19	8	3	0	0	0	0.095445	1	12818	12818		51.488	11.249	1	6012300			43963	3402	32176	32435	42894	42894					0.08550747585650242
RLNPINTTL	9	Unmodified	_RLNPINTTL_					0	0	0		nc|ENSG00000101079|Q9UGV2-3|NDRG3;nc|ENSG00000101079|Q9UGV2-2|NDRG3;ENSG00000101079|ENST00000349004|NDRG3	nc|ENSG00000101079|Q9UGV2-3|NDRG3	nc|ENSG00000101079|Q9UGV2-3|NDRG3	MULTI-MSMS	A375_MHC_IP_R1	1	521.7059326171875	2	521.306198	1040.59784	-0.52837	-0.00027544	-0.19448	-0.00010138	-0.72285	-0.00037683	521.3060954639923	57.949	0.40641	57.949	57.72	58.126	0					12	7	2	0	0	0	0.32092	1	20798	20798		29.082	5.061	1	1939000			43964	2249	32177	32436	42895	42895					0.07916834225898128
RLNPINTTL	9	Unmodified	_RLNPINTTL_					0	0	0		nc|ENSG00000101079|Q9UGV2-3|NDRG3;nc|ENSG00000101079|Q9UGV2-2|NDRG3;ENSG00000101079|ENST00000349004|NDRG3	nc|ENSG00000101079|Q9UGV2-3|NDRG3	nc|ENSG00000101079|Q9UGV2-3|NDRG3	MULTI-MSMS	A375_MHC_IP_R2	2	521.70556640625	2	521.306198	1040.59784	-1.0314	-0.00053766	-0.024058	-1.2541E-05	-1.0554	-0.0005502	521.3060459468883	56.976	0.61185	57.727	57.459	58.071	0.75015					18	11	3	0	0	0	0.55471	1	21574	21574		17.113	2.2746	1	2369700			43965	2249	32177	32436	42896	42896					0.07916834225898128
RLNQTTFTA	9	Unmodified	_RLNQTTFTA_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-SECPEP	A375_MHC_IP_R1	1	526.6798706054688	2	526.28018	1050.54581	-0.52471	-0.00027615	-0.29735	-0.00015649	-0.82206	-0.00043264	526.2800613747044	34.233	0.35348	34.233	34.052	34.405	0					14	6	3	0	0	0	0.11711	1	11275	11275		69.105	25.247	1	7237400			43966	9304	32178	32437	42897	42897					0.022556708121328484
RLNQTTFTA	9	Unmodified	_RLNQTTFTA_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-SECPEP	A375_MHC_IP_R2	2	526.6793823242188	2	526.28018	1050.54581	-0.85663	-0.00045083	-0.2009	-0.00010573	-1.0575	-0.00055656	526.2799378174986	33.469	0.40675	34.222	34.043	34.45	0.75225					12	7	3	0	0	0	0.20645	1	12000	12000		56.177	16.227	1	6287700			43967	9304	32178	32437	42898	42898					0.022556708121328484
RLNRKRWRREE	11	Unmodified	_RLNRKRWRREE_					0	0	0			REV__ENST00000495893.6_1_3:169890496-169899520:-|nuORF	REV__ENST00000495893.6_1_3:169890496-169899520:-|nuORF	MSMS	A375_MHC_IP_R1	1	533.7020263671875	3	533.641468	1597.90257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.74	1	133.74	133.24	134.24	0								0	0	0	0.1634	1	51576	51576		1.0136	0.50762	1		+		43968	25262	32179	32438	42899	42899					0.12753823422781352
RLNRPVHLV	9	Unmodified	_RLNRPVHLV_					0	0	0			REV__APOB|p.K3314R|1|0.27|ENSG00000084674|chr2:21006927-21006927|T/C|missense_variant	REV__APOB|p.K3314R|1|0.27|ENSG00000084674|chr2:21006927-21006927|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	368.9488220214844	3	368.564725	1102.67235	0.46498	0.00017138	-2.4596	-0.00090651	-1.9946	-0.00073514	368.89773552637433	45.672	0.60893	45.672	45.434	46.043	0					14	11	2	0	0	0	0.76492	1	16094	16094		1.1933	0	1	3248200	+		43969	15424	32180	32439	42900	42900					0.12511641827927633
RLNTIPLFV	9	Unmodified	_RLNTIPLFV_					0	0	0		ENSG00000173801|ENST00000393931|JUP;ENST00000585793.1_1_17:39914605-39919321:-|nuORF	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-SECPEP	A375_MHC_IP_R2	2	537.2284545898438	2	536.829309	1071.64407	-0.99298	-0.00053306	-0.17737	-9.5217E-05	-1.1703	-0.00062828	536.8290300867127	66.58	1.1716	67.316	66.932	68.104	0.73631					60	22	5	0	0	0	0.65623	1	25171	25171		19.257	3.1079	1	29448000			43970	7830	32181	32440	42901	42901					0.11110899127993434
RLNVLLQPI	9	Unmodified	_RLNVLLQPI_					0	0	0			REV__nc|ENSG00000204700|O76002|OR2J2	REV__nc|ENSG00000204700|O76002|OR2J2	MSMS	A375_MHC_IP_R2	2	355.94140625	3	355.897481	1064.67061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.985	1	29.684	29.184	30.184	0.69872								0	0	0	0.15486	1	10080	10080		6.6304	0	1		+		43971	22536	32182	32441	42902	42902					0.1408658801931324
RLPDDDPTAV	10	Unmodified	_RLPDDDPTAV_					0	0	0		ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	MULTI-MSMS	A375_MHC_IP_R1	1	550.7268676757812	2	549.774928	1097.5353	-0.45784	-0.00025171	0.10805	5.9401E-05	-0.3498	-0.00019231	549.7749873175853	39.308	1.1171	39.308	38.933	40.05	0					57	21	4	0	0	0	0.6502	1	13327	13327		17.113	3.2068	1	45715000			43972	6319	32183	32442	42903	42903					-0.00956356632968891
RLPDDDPTAV	10	Unmodified	_RLPDDDPTAV_					0	0	0		ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	MULTI-SECPEP	A375_MHC_IP_R2	2	549.6538696289062	2	549.774928	1097.5353	-1.1329	-0.00062284	0.14993	8.2426E-05	-0.98297	-0.00054041	549.7749912976681	38.618	1.2225	39.392	38.997	40.219	0.77451					61	23	4	0	0	0	0.15413	1	14161	14161		67.838	40.209	1	48671000			43973	6319	32183	32442	42904	42904					-0.00956356632968891
RLPDLIKEV	9	Unmodified	_RLPDLIKEV_					0	0	0		ENSG00000198380|ENST00000357308|GFPT1;nc|ENSG00000198380|Q06210-2|GFPT1	ENSG00000198380|ENST00000357308|GFPT1	ENSG00000198380|ENST00000357308|GFPT1	MULTI-MSMS	A375_MHC_IP_R1	1	541.9685668945312	2	541.832049	1081.64954	-0.13941	-7.5538E-05	-0.064952	-3.5193E-05	-0.20436	-0.00011073	541.8319759464084	69.602	1.2189	69.602	69.173	70.392	0					56	23	4	0	0	0	0.25658	1	25366	25366		35.612	2.8266	1	15730000			43974	9261	32184	32443	42905	42905					0.1119857791979939
RLPDPFAKI	9	Unmodified	_RLPDPFAKI_					0	0	0		ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	MULTI-SECPEP	A375_MHC_IP_R1	1	529.2129516601562	2	528.813659	1055.61277	-0.38473	-0.00020345	-0.29519	-0.0001561	-0.67992	-0.00035955	528.8134555242365	71.362	0.66171	71.362	70.953	71.615	0					31	12	3	0	0	0	0.33896	1	25871	25871		33.445	15.31	1	5415900			43975	9313	32185	32444	42906	42906					0.08718326093890028
RLPDPFAKI	9	Unmodified	_RLPDPFAKI_					0	0	0		ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	MULTI-SECPEP	A375_MHC_IP_R2	2	529.212890625	2	528.813659	1055.61277	-0.51189	-0.00027069	-0.53856	-0.0002848	-1.0504	-0.00055549	528.8132256656556	70.499	0.81073	71.233	70.743	71.553	0.73421					35	15	3	0	0	0	0.33896	1	26670	26670		47.594	32.756	1	6304900			43976	9313	32185	32444	42907	42907					0.08718326093890028
RLPDPFAKV	9	Unmodified	_RLPDPFAKV_					0	0	0		ENSG00000108854|ENST00000262435|SMURF2	ENSG00000108854|ENST00000262435|SMURF2	ENSG00000108854|ENST00000262435|SMURF2	MULTI-SECPEP	A375_MHC_IP_R1	1	522.2056274414062	2	521.805834	1041.59712	-0.4976	-0.00025965	0.012381	6.4604E-06	-0.48521	-0.00025319	521.8057412553557	61.659	0.91901	61.659	61.279	62.198	0					49	17	4	0	0	0	0.59614	1	22182	22182		22.658	15.935	1	17326000			43977	2846	32186	32445	42908	42908					0.0779803957684635
RLPDPFAKV	9	Unmodified	_RLPDPFAKV_					0	0	0		ENSG00000108854|ENST00000262435|SMURF2	ENSG00000108854|ENST00000262435|SMURF2	ENSG00000108854|ENST00000262435|SMURF2	MULTI-SECPEP	A375_MHC_IP_R2	2	522.205322265625	2	521.805834	1041.59712	-0.89377	-0.00046637	-0.11933	-6.2268E-05	-1.0131	-0.00052864	521.8057355541176	60.694	0.86267	61.439	61.006	61.869	0.74503					41	16	3	0	0	0	0.59614	1	22934	22934		22.658	7.8198	1	18665000			43978	2846	32186	32445	42909	42909					0.0779803957684635
RLPDSGVYV	9	Unmodified	_RLPDSGVYV_					0	0	0		ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-4|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;nc|ENSG00000124006|O75147-1|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF	ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-1|OBSL1	ENSG00000124006|ENST00000404537|OBSL1	MULTI-SECPEP	A375_MHC_IP_R1	1	503.67120361328125	2	503.271824	1004.5291	-0.47058	-0.00023683	-0.081786	-4.1161E-05	-0.55237	-0.00027799	503.27183240952763	52.583	1.0639	52.583	52.237	53.301	0					48	20	5	0	0	0	0.24324	1	18662	18662		45.7	15.475	1	21234000			43979	3867;14575	32187	32446	42910	42910					0.027011699261947797
RLPDSGVYV	9	Unmodified	_RLPDSGVYV_					0	0	0		ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-4|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;nc|ENSG00000124006|O75147-1|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF	ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-1|OBSL1	ENSG00000124006|ENST00000404537|OBSL1	MULTI-SECPEP	A375_MHC_IP_R2	2	503.5075378417969	2	503.271824	1004.5291	-0.94206	-0.00047411	0.20506	0.0001032	-0.73699	-0.00037091	503.27185824970684	51.832	0.81335	52.584	52.219	53.032	0.75225					33	15	3	0	0	0	0.27742	1	19546	19546		51.63	26.23	1	19376000			43980	3867;14575	32187	32446	42911	42911					0.027011699261947797
RLPEAIEEV	9	Unmodified	_RLPEAIEEV_					0	0	0		ENSG00000137106|ENST00000318158|GRHPR;ENST00000460882.5_1_9:37422710-37436776:+|nuORF;ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENST00000493368.5_1_9:37422710-37428742:+|nuORF	ENSG00000137106|ENST00000318158|GRHPR	ENSG00000137106|ENST00000318158|GRHPR	MULTI-MSMS	A375_MHC_IP_R1	1	528.6896362304688	2	528.290214	1054.56587	-0.56232	-0.00029707	-0.10117	-5.3448E-05	-0.66349	-0.00035052	528.2900831511885	61.047	1.4797	61.047	60.566	62.046	0					77	28	4	0	0	0	0.050868	1	22119	22119		63.961	10.128	1	60420000			43981	4861	32188	32447	42912	42912					0.04077421752072041
RLPEAIEEV	9	Unmodified	_RLPEAIEEV_					0	0	0		ENSG00000137106|ENST00000318158|GRHPR;ENST00000460882.5_1_9:37422710-37436776:+|nuORF;ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENST00000493368.5_1_9:37422710-37428742:+|nuORF	ENSG00000137106|ENST00000318158|GRHPR	ENSG00000137106|ENST00000318158|GRHPR	MULTI-SECPEP	A375_MHC_IP_R2	2	528.6346435546875	2	528.290214	1054.56587	-0.84875	-0.00044839	-0.29392	-0.00015528	-1.1427	-0.00060366	528.289983534406	60.175	1.471	60.922	60.45	61.921	0.74714					70	28	4	0	0	0	0.23894	1	22847	22847		55.503	3.8729	1	64180000			43982	4861	32188	32447	42913	42913					0.04077421752072041
RLPGPLGTV	9	Unmodified	_RLPGPLGTV_					0	0	0		ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	MULTI-MSMS	A375_MHC_IP_R1	1	455.6795959472656	2	455.279452	908.544351	0.27246	0.00012404	-0.28923	-0.00013168	-0.016773	-7.6362E-06	455.27926950548743	69.517	0.71098	69.517	69.121	69.832	0					29	13	3	0	0	0	0.021889	1	25211	25211		81.89	20.533	1	2860700			43983	8171	32189	32448	42914	42914					0.0864208151405137
RLPGPLGTV	9	Unmodified	_RLPGPLGTV_					0	0	0		ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	MULTI-MSMS	A375_MHC_IP_R2	2	455.67901611328125	2	455.279452	908.544351	-0.099729	-4.5404E-05	-0.14666	-6.6773E-05	-0.24639	-0.00011218	455.2793283893448	68.525	0.75907	69.26	68.918	69.677	0.73511					30	14	3	0	0	0	0.064406	1	25922	25922		58.679	12.658	1	2888900			43984	8171	32189	32448	42915	42915					0.0864208151405137
RLPKEVIFK	9	Unmodified	_RLPKEVIFK_					0	0	0		EBF1|p.L379F|1|0.38|ENSG00000164330|chr5:158714173-158714173|G/A|missense_variant	EBF1|p.L379F|1|0.38|ENSG00000164330|chr5:158714173-158714173|G/A|missense_variant	EBF1|p.L379F|1|0.38|ENSG00000164330|chr5:158714173-158714173|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	377.2769775390625	3	377.241248	1128.70191	-0.0097885	-3.6926E-06	0.53544	0.00020199	0.52566	0.0001983	377.2414568811248	38.293	2.2889	38.293	37.71	39.999	0					63	44	2	0	0	0	0.69317	1	12826	12826		7.609	0.50723	1	305370000			43985	814	32190	32449	42916	42916					0.14271161053420656
RLPKVEILR	9	Unmodified	_RLPKVEILR_					0	0	0		ENSG00000122180|ENST00000241651|MYOG;ENSG00000111046|ENST00000228641|MYF6;ENSG00000111049|ENST00000228644|MYF5;ENSG00000129152|ENST00000250003|MYOD1	ENSG00000122180|ENST00000241651|MYOG	ENSG00000122180|ENST00000241651|MYOG	MULTI-SECPEP	A375_MHC_IP_R2	2	375.4222412109375	3	375.248514	1122.72371	-0.034182	-1.2827E-05	-0.026097	-9.7929E-06	-0.060279	-2.2619E-05	375.2483932863996	26.698	0.30489	27.358	27.161	27.466	0.65992					6	5	2	0	0	0	0.7911	1	9058	9058		4.5289	0	1	910100			43986	3765	32191	32450	42917	42917					0.16725965801970233
RLPLQERRQRE	11	Unmodified	_RLPLQERRQRE_					0	0	0		ENST00000261205.8_1_12:79258472-79371593:+|nuORF	ENST00000261205.8_1_12:79258472-79371593:+|nuORF	ENST00000261205.8_1_12:79258472-79371593:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	495.0205383300781	3	494.28669	1479.83824	-0.60964	-0.00030133	-0.0084001	-4.152E-06	-0.61804	-0.00030549	494.28656758790095	132.74	1.0164	132.74	132.08	133.1	0					53	19	4	0	0	0	0.73809	1	51261	51261		1.2148	0.80657	1	9691900			43987	10274	32192	32451	42918	42918					0.11751623545978873
RLPLVKRKYE	10	Unmodified	_RLPLVKRKYE_					0	0	0			REV__nc|ENSG00000188732|A4D161-2|FAM221A	REV__nc|ENSG00000188732|A4D161-2|FAM221A	MSMS	A375_MHC_IP_R2	2	651.4712524414062	2	651.406247	1300.79794	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.69	1	146.71	146.21	147.21	0.019913								0	0	0	0.15629	1	57117	57117		0.40072	0.050084	1		+		43988	22108	32193	32452	42919	42919					0.15957308893484878
RLPMDESF	8	Unmodified	_RLPMDESF_					0	0	0			REV__ENSG00000180532|ENST00000318203|ZSCAN4	REV__ENSG00000180532|ENST00000318203|ZSCAN4	MULTI-MSMS	A375_MHC_IP_R2	2	497.69769287109375	2	497.73676	993.458967	-0.3501	-0.00017426	-0.069035	-3.4361E-05	-0.41914	-0.00020862	497.73708418046	95.587	1.0704	96.337	95.735	96.805	0.75045					53	20	4	0	0	0	0.77123	1	36136	36136		14.582	1.0738	1	3609300	+		43989	21617	32194	32453	42920	42920					-0.038024517339295016
RLPNAGTQV	9	Unmodified	_RLPNAGTQV_					0	0	0		nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6	nc|ENSG00000091409|P23229-4|ITGA6	nc|ENSG00000091409|P23229-4|ITGA6	MULTI-SECPEP	A375_MHC_IP_R1	1	478.66937255859375	2	478.269616	954.524678	-0.67013	-0.0003205	0.2436	0.00011651	-0.42653	-0.000204	478.2697069453419	27.861	0.55415	27.861	27.634	28.188	0					19	10	2	0	0	0	0.10103	1	8495	8495		53.833	15.859	1	17256000			43990	14499	32195	32454	42921	42921					0.04559705503288569
RLPNAGTQV	9	Unmodified	_RLPNAGTQV_					0	0	0		nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6	nc|ENSG00000091409|P23229-4|ITGA6	nc|ENSG00000091409|P23229-4|ITGA6	MULTI-SECPEP	A375_MHC_IP_R2	2	478.66943359375	2	478.269616	954.524678	-0.52024	-0.00024882	0.068014	3.2529E-05	-0.45223	-0.00021629	478.2695941642335	27.241	0.61102	27.92	27.69	28.301	0.67857					23	11	3	0	0	0	0.10103	1	9252	9252		71.922	27.515	1	14880000			43991	14499	32195	32454	42922	42922					0.04559705503288569
RLPPDFFGV	9	Unmodified	_RLPPDFFGV_					0	0	0		ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	MULTI-MSMS	A375_MHC_IP_R1	1	524.6847534179688	2	524.284734	1046.55492	-0.44425	-0.00023291	0.086041	4.511E-05	-0.35821	-0.00018781	524.2846202573248	102.89	3.9046	102.89	101.09	104.99	0					175	76	3	0	0	0	0.19747	4	37847	37648;37847;38029;38051		38.176	11.834	1	4071800			43992	4098	32196	32455	42923;42924;42925;42926	42924					0.03350064168489553
RLPPDFFGV	9	Unmodified	_RLPPDFFGV_					0	0	0		ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	MULTI-MSMS	A375_MHC_IP_R2	2	524.6846313476562	2	524.284734	1046.55492	-0.47399	-0.00024851	-0.113	-5.9244E-05	-0.58699	-0.00030775	524.2845078648398	102.25	3.565	103.01	101.19	104.75	0.76428					178	69	3	0	0	0	0.094655	4	38614	38187;38614;39032;39115		51.63	22.548	1	4420500			43993	4098	32196	32455	42927;42928;42929;42930	42928					0.03350064168489553
RLPPEGILHNV	11	Unmodified	_RLPPEGILHNV_					0	0	0		ENSG00000048707|ENST00000620676|VPS13D;nc|ENSG00000048707|Q5THJ4-2|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	MULTI-MSMS	A375_MHC_IP_R1	1	623.2591552734375	2	622.859129	1243.70371	-0.36992	-0.00023041	0.36904	0.00022986	-0.00088342	-5.5025E-07	622.859304693468	56.51	1.2176	56.51	55.738	56.956	0					30	23	2	0	0	0	0.63149	1	20265	20265		20.871	12.126	1	1448000			43994	1216	32197	32456	42931	42931					0.09160170071368157
RLPPLQYVL	9	Unmodified	_RLPPLQYVL_					0	0	0		ENSG00000115112|ENST00000263707|TFCP2L1;TFCP2L1|p.E41K|1|0.43|ENSG00000115112|chr2:121281213-121281213|C/T|missense_variant	ENSG00000115112|ENST00000263707|TFCP2L1	ENSG00000115112|ENST00000263707|TFCP2L1	MSMS	A375_MHC_IP_R1	1	366.92938232421875	3	366.893848	1097.65972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.811	1	46.811	46.311	47.311	0								0	0	0	0.15486	1	16443	16443		7.609	1.8255	1				43995	3271	32198	32457	42932	42932					0.11479185645021062
RLPPPFPGL	9	Unmodified	_RLPPPFPGL_					0	0	0		nc|ENSG00000028528|Q13596-2|SNX1;ENSG00000028528|ENST00000559844|SNX1;nc|ENSG00000028528|Q13596-3|SNX1	nc|ENSG00000028528|Q13596-2|SNX1	nc|ENSG00000028528|Q13596-2|SNX1	MULTI-MSMS	A375_MHC_IP_R1	1	497.69744873046875	2	497.297645	992.580737	-0.47681	-0.00023712	0.28751	0.00014298	-0.1893	-9.4138E-05	497.2977051881649	95.13	3.6499	95.13	93.991	97.641	0					198	71	4	0	0	0	0.010002	3	34930	34930;35051;35588		123.1	123.1	1	37661000			43996	1102	32199	32458	42933;42934;42935	42933					0.08414958410764939
RLPPPFPGL	9	Unmodified	_RLPPPFPGL_					0	0	0		nc|ENSG00000028528|Q13596-2|SNX1;ENSG00000028528|ENST00000559844|SNX1;nc|ENSG00000028528|Q13596-3|SNX1	nc|ENSG00000028528|Q13596-2|SNX1	nc|ENSG00000028528|Q13596-2|SNX1	MULTI-MSMS	A375_MHC_IP_R2	2	497.6978454589844	2	497.297645	992.580737	-0.29205	-0.00014524	0.022899	1.1388E-05	-0.26915	-0.00013385	497.29755832872854	94.256	3.6546	95	93.602	97.256	0.74473					195	71	4	0	0	0	0.010002	1	35932	35932		123.1	123.1	1	37502000			43997	1102	32199	32458	42936	42936					0.08414958410764939
RLPPPPWPWRW	11	Unmodified	_RLPPPPWPWRW_					0	0	0		ENST00000527224.1_1_11:65837982-65838258:+|nuORF	ENST00000527224.1_1_11:65837982-65838258:+|nuORF	ENST00000527224.1_1_11:65837982-65838258:+|nuORF	MSMS	A375_MHC_IP_R1	1	496.7004089355469	3	496.606813	1486.79861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.441	1	95.441	94.941	95.941	0								0	0	0	0.16099	1	35080	35080		13.519	6.8883	1				43998	13094	32200	32459	42937	42937					0.07468148333191493
RLPRHFLFYFR	11	Unmodified	_RLPRHFLFYFR_					0	0	0			REV__ENSG00000176142|ENST00000319172|TMEM39A	REV__ENSG00000176142|ENST00000319172|TMEM39A	MULTI-MSMS	A375_MHC_IP_R1	1	518.3611450195312	3	517.961367	1550.86227	-0.8002	-0.00041447	0.61733	0.00031975	-0.18287	-9.4721E-05	517.9614488534556	134.44	1.4201	134.44	133.97	135.39	0					91	27	5	0	0	0	0.73902	1	51905	51905		0.45452	0.45452	1	26561000	+		43999	21387	32201	32460	42938	42938					0.1088750877026996
RLPRHFLFYFR	11	Unmodified	_RLPRHFLFYFR_					0	0	0			REV__ENSG00000176142|ENST00000319172|TMEM39A	REV__ENSG00000176142|ENST00000319172|TMEM39A	MULTI-MSMS	A375_MHC_IP_R2	2	518.6957397460938	3	517.961367	1550.86227	-0.64095	-0.00033199	0.85187	0.00044123	0.21091	0.00010925	517.9615024727384	133.6	1.1159	133.77	133.09	134.21	0.16487					69	21	4	0	0	0	0.73902	1	52668	52668		0.45452	0.45452	1	13671000	+		44000	21387	32201	32460	42939	42939					0.1088750877026996
RLPRKQEALK	10	Unmodified	_RLPRKQEALK_					0	0	0			REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	MULTI-SECPEP	A375_MHC_IP_R1	1	414.3287048339844	3	413.594573	1237.76189	-0.051586	-2.1336E-05	-0.67703	-0.00028002	-0.72861	-0.00030135	413.9286552051008	139.39	0.40559	139.39	139.22	139.62	0					13	7	3	0	0	0	0.94862	1	53599	53599		0.69767	0	1	1274600	+		44001	27101	32202	32461	42940	42940					0.15251851716629972
RLPRKQEALK	10	Unmodified	_RLPRKQEALK_					0	0	0			REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	413.594573	1237.76189	0.20536	8.4936E-05	-1.0058	-0.00041598	-0.80041	-0.00033104	413.5940636795099	139.37	0.39932	139.43	139.3	139.7	0.059906	0.017022	-0.00018889	NaN	0.69767	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1774300	+		44002	27101	32202	32461							0.15251851716629972
RLQDAIAKV	9	Unmodified	_RLQDAIAKV_					0	0	0		SPECC1L-MED15|5|fusion;SPECC1L-MED15|1|fusion;SPECC1L-MED15|6|fusion;SPECC1L-MED15|2|fusion;nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L	SPECC1L-MED15|5|fusion	SPECC1L-MED15|5|fusion	MULTI-SECPEP	A375_MHC_IP_R2	2	507.708251953125	2	507.308741	1012.60293	-1.0151	-0.00051499	-0.21755	-0.00011037	-1.2327	-0.00062536	507.3087495569659	38.14	0.81802	38.915	38.382	39.2	0.77451					31	15	3	0	0	0	0.05217	1	13994	13994		89.401	13.64	1	26150000			44003	29231	32203	32462	42941	42941					0.09713138088511641
RLQDLRVLV	9	Unmodified	_RLQDLRVLV_					0	0	0		nc|ENSG00000168079|Q6ZMJ2-3|SCARA5;nc|ENSG00000168079|Q6ZMJ2-2|SCARA5;ENSG00000168079|ENST00000354914|SCARA5	nc|ENSG00000168079|Q6ZMJ2-3|SCARA5	nc|ENSG00000168079|Q6ZMJ2-3|SCARA5	MULTI-MSMS	A375_MHC_IP_R1	1	556.7505493164062	2	556.35094	1110.68733	-0.49356	-0.00027459	0.43779	0.00024357	-0.055772	-3.1029E-05	556.3512226100514	70.769	0.51141	70.769	70.494	71.005	0					19	9	3	0	0	0	0.58268	1	25695	25695		16.149	0	1	3807200			44004	7262	32204	32463	42942	42942					0.13641088905251308
RLQDLRVLV	9	Unmodified	_RLQDLRVLV_					0	0	0		nc|ENSG00000168079|Q6ZMJ2-3|SCARA5;nc|ENSG00000168079|Q6ZMJ2-2|SCARA5;ENSG00000168079|ENST00000354914|SCARA5	nc|ENSG00000168079|Q6ZMJ2-3|SCARA5	nc|ENSG00000168079|Q6ZMJ2-3|SCARA5	MULTI-MSMS	A375_MHC_IP_R1	1	371.6367492675781	3	371.236385	1110.68733	0.38771	0.00014393	0.22469	8.3413E-05	0.6124	0.00022735	371.23649758010384	70.774	0.51141	70.774	70.494	71.005	0					16	9	2	0	0	0	0.73141	1	25727	25727		4.1895	1.691	1	3024200			44005	7262	32204	32463	42943	42943					0.13641088905251308
RLQDLRVLV	9	Unmodified	_RLQDLRVLV_					0	0	0		nc|ENSG00000168079|Q6ZMJ2-3|SCARA5;nc|ENSG00000168079|Q6ZMJ2-2|SCARA5;ENSG00000168079|ENST00000354914|SCARA5	nc|ENSG00000168079|Q6ZMJ2-3|SCARA5	nc|ENSG00000168079|Q6ZMJ2-3|SCARA5	MULTI-MSMS	A375_MHC_IP_R2	2	371.63641357421875	3	371.236385	1110.68733	0.48524	0.00018014	-0.051185	-1.9002E-05	0.43405	0.00016114	371.2362834989096	69.799	0.40819	70.533	70.335	70.743	0.73421					17	7	3	0	0	0	0.6894	1	26484	26484		7.9454	4.0691	1	1989400			44006	7262	32204	32463	42944	42944					0.13641088905251308
RLQEDMQY	8	Unmodified	_RLQEDMQY_					0	0	0		nc|ENSG00000080298|P48380-2|RFX3;ENSG00000080298|ENST00000617270|RFX3;nc|ENSG00000080298|P48380-3|RFX3;RFX3|p.M272I|1|0.89|ENSG00000080298|chr9:3288166-3288166|C/T|missense_variant;RFX3|p.A273V|1|0.73|ENSG00000080298|chr9:3288164-3288164|G/A|missense_variant	nc|ENSG00000080298|P48380-2|RFX3	nc|ENSG00000080298|P48380-2|RFX3	MSMS	A375_MHC_IP_R2	2	541.6849975585938	2	541.750398	1081.48624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.714	1	33.451	32.951	33.951	0.73692								0	0	0	0.16876	1	11669	11669		28.487	5.7506	1				44007	1711	32205	32464	42945	42945					-0.05123968193561268
RLQEDPPAGV	10	Unmodified	_RLQEDPPAGV_					0	0	0		ENSG00000077721|ENST00000371558|UBE2A;nc|ENSG00000077721|P49459-2|UBE2A	ENSG00000077721|ENST00000371558|UBE2A	ENSG00000077721|ENST00000371558|UBE2A	MULTI-SECPEP	A375_MHC_IP_R1	1	541.6851196289062	2	541.285463	1080.55637	-0.6176	-0.0003343	-0.11494	-6.2214E-05	-0.73254	-0.00039651	541.2853511353354	33.419	0.75896	33.419	33.14	33.898	0					28	14	4	0	0	0	0.48281	1	10891	10891		61.09	33.867	1	15692000			44008	1661	32206	32465	42946	42946					0.01931653466544958
RLQEDPPAGV	10	Unmodified	_RLQEDPPAGV_					0	0	0		ENSG00000077721|ENST00000371558|UBE2A;nc|ENSG00000077721|P49459-2|UBE2A	ENSG00000077721|ENST00000371558|UBE2A	ENSG00000077721|ENST00000371558|UBE2A	MULTI-SECPEP	A375_MHC_IP_R2	2	541.6849975585938	2	541.285463	1080.55637	-0.89864	-0.00048642	0.097819	5.2948E-05	-0.80082	-0.00043347	541.2854267321744	32.744	0.50791	33.481	33.265	33.773	0.73692					22	9	3	0	0	0	0.61782	1	11669	11669		57.722	19.546	1	11595000			44009	1661	32206	32465	42947	42947					0.01931653466544958
RLQEDPPVGV	10	Unmodified	_RLQEDPPVGV_					0	0	0		ENSG00000119048|ENST00000265339|UBE2B;ENST00000511807.1_1_5:133707262-133710155:+|nuORF	ENSG00000119048|ENST00000265339|UBE2B	ENSG00000119048|ENST00000265339|UBE2B	MULTI-MSMS	A375_MHC_IP_R1	1	555.7011108398438	2	555.301113	1108.58767	-0.52004	-0.00028878	-0.10873	-6.0378E-05	-0.62877	-0.00034916	555.3009831094265	44.032	0.66352	44.032	43.757	44.42	0					31	12	4	0	0	0	0.10407	1	15324	15324		80.676	50.039	1	17953000			44010	3572	32207	32466	42948	42948					0.037722265006550515
RLQEDPPVGV	10	Unmodified	_RLQEDPPVGV_					0	0	0		ENSG00000119048|ENST00000265339|UBE2B;ENST00000511807.1_1_5:133707262-133710155:+|nuORF	ENSG00000119048|ENST00000265339|UBE2B	ENSG00000119048|ENST00000265339|UBE2B	MULTI-MSMS	A375_MHC_IP_R2	2	555.7005004882812	2	555.301113	1108.58767	-0.64565	-0.00035853	-0.2076	-0.00011528	-0.85325	-0.00047381	555.3009259915233	43.231	0.80922	44.004	43.674	44.483	0.7724					34	15	4	0	0	0	0.13001	1	16089	16089		74.2	50.179	1	19823000			44011	3572	32207	32466	42949	42949					0.037722265006550515
RLQEEINEV	9	Unmodified	_RLQEEINEV_					0	0	0		nc|ENSG00000166130|Q70UQ0-2|IKBIP;nc|ENSG00000166130|Q70UQ0|IKBIP	nc|ENSG00000166130|Q70UQ0-2|IKBIP	nc|ENSG00000166130|Q70UQ0-2|IKBIP	MULTI-SECPEP	A375_MHC_IP_R1	1	564.6681518554688	2	565.296027	1128.5775	-0.29971	-0.00016943	-0.16501	-9.3278E-05	-0.46472	-0.0002627	565.2959286862589	40.662	0.45654	40.662	40.406	40.863	0					21	8	3	0	0	0	0.31976	1	13967	13967		21.59	5.0243	1	11577000			44012	14740	32208	32467	42950	42950					0.018356187754079656
RLQEEINEV	9	Unmodified	_RLQEEINEV_					0	0	0		nc|ENSG00000166130|Q70UQ0-2|IKBIP;nc|ENSG00000166130|Q70UQ0|IKBIP	nc|ENSG00000166130|Q70UQ0-2|IKBIP	nc|ENSG00000166130|Q70UQ0-2|IKBIP	MULTI-SECPEP	A375_MHC_IP_R2	2	564.6682739257812	2	565.296027	1128.5775	-0.49384	-0.00027916	-0.25284	-0.00014293	-0.74668	-0.0004221	565.2958409823594	39.891	0.55816	40.665	40.422	40.98	0.77451					27	10	4	0	0	0	0.31976	1	14772	14772		40.239	5.3071	1	10205000			44013	14740	32208	32467	42951	42951					0.018356187754079656
RLQEELRKV	9	Unmodified	_RLQEELRKV_					0	0	0		nc|ENSG00000167767|Q6KB66-2|KRT80;ENSG00000167767|ENST00000394815|KRT80;CON__Q6KB66-1;nc|ENSG00000167767|Q6KB66-3|KRT80;ENST00000466011.1_1_12:52565184-52579482:-|nuORF;CON__Q0VBK2	nc|ENSG00000167767|Q6KB66-2|KRT80	nc|ENSG00000167767|Q6KB66-2|KRT80	MSMS	A375_MHC_IP_R1	1	390.925537109375	3	390.903295	1169.68806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.613	1	24.613	24.113	25.113	0								0	0	0	0.14865	1	7028	7028		22.775	12.46	1			+	44014	627	32209	32468	42952	42952					0.10999883554313783
RLQEELRKV	9	Unmodified	_RLQEELRKV_					0	0	0		nc|ENSG00000167767|Q6KB66-2|KRT80;ENSG00000167767|ENST00000394815|KRT80;CON__Q6KB66-1;nc|ENSG00000167767|Q6KB66-3|KRT80;ENST00000466011.1_1_12:52565184-52579482:-|nuORF;CON__Q0VBK2	nc|ENSG00000167767|Q6KB66-2|KRT80	nc|ENSG00000167767|Q6KB66-2|KRT80	MULTI-MSMS	A375_MHC_IP_R2	2	390.925537109375	3	390.903295	1169.68806	-0.41948	-0.00016398	0.57094	0.00022318	0.15146	5.9206E-05	390.90355250623315	23.954	0.25653	24.584	24.485	24.742	0.63014					5	4	2	0	0	0	0.2415	1	7814	7814		27.088	16.938	1	2562100		+	44015	627	32209	32468	42953	42953					0.10999883554313783
RLQEFIDEV	9	Unmodified	_RLQEFIDEV_					0	0	0		TUBGCP5|p.F375Lfs*19|1|0.39|ENSG00000275835|chr15:23023990-23023990|G/-|frameshift_variant;nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5	TUBGCP5|p.F375Lfs*19|1|0.39|ENSG00000275835|chr15:23023990-23023990|G/-|frameshift_variant	TUBGCP5|p.F375Lfs*19|1|0.39|ENSG00000275835|chr15:23023990-23023990|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	574.8251953125	2	574.800946	1147.58734	-0.21713	-0.00012481	-0.28908	-0.00016616	-0.50621	-0.00029097	574.8007857581006	77.411	0.50555	77.411	77.133	77.639	0					25	9	3	0	0	0	0.32889	1	28294	28294		28.495	9.1326	1	9123300			44016	10014	32210	32469	42954	42954					0.019448067807843472
RLQEFIDEV	9	Unmodified	_RLQEFIDEV_					0	0	0		TUBGCP5|p.F375Lfs*19|1|0.39|ENSG00000275835|chr15:23023990-23023990|G/-|frameshift_variant;nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5	TUBGCP5|p.F375Lfs*19|1|0.39|ENSG00000275835|chr15:23023990-23023990|G/-|frameshift_variant	TUBGCP5|p.F375Lfs*19|1|0.39|ENSG00000275835|chr15:23023990-23023990|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	575.2008666992188	2	574.800946	1147.58734	-0.20109	-0.00011558	-0.48706	-0.00027996	-0.68815	-0.00039555	574.8006418176005	76.509	0.76184	77.25	76.893	77.655	0.74052					26	14	3	0	0	0	0.022401	1	29041	29041		110.67	34.914	1	6615100			44017	10014	32210	32469	42955	42955					0.019448067807843472
RLQELTEKL	9	Unmodified	_RLQELTEKL_					0	0	0		ENSG00000166046|ENST00000299045|TCP11L2;TCP11L2|p.G326E|1|0.18|ENSG00000166046|chr12:106336048-106336048|G/A|missense_variant	ENSG00000166046|ENST00000299045|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	MULTI-MSMS	A375_MHC_IP_R1	1	565.3422241210938	2	565.332413	1128.65027	-0.15601	-8.8197E-05	-0.13385	-7.5669E-05	-0.28986	-0.00016387	565.3323695889912	42.917	0.40705	42.917	42.79	43.197	0					14	7	3	0	0	0	0.64151	1	14899	14899		16.566	0	1	4139500			44018	7020	32211	32470	42956	42956					0.09109372568855179
RLQESVMEA	9	Oxidation (M)	_RLQESVM(Oxidation (M))EA_		RLQESVM(1)EA		RLQESVM(68)EA	0	0	1		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	A375_MHC_IP_R1	1	540.2015991210938	2	539.763506	1077.51246	-0.89983	-0.0004857	0.044991	2.4284E-05	-0.85484	-0.00046141	539.7635013008414	23.915	0.35509	23.915	23.787	24.143	0					10	6	2	0	0	0	0.04093	2	6662	6662;6675		67.838	27.888	1	23622000			44019	6877	32212	32471	42957;42958	42957		358			-0.02319699022086752
RLQESVMEA	9	Oxidation (M)	_RLQESVM(Oxidation (M))EA_		RLQESVM(1)EA		RLQESVM(80)EA	0	0	1		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	A375_MHC_IP_R1	1	540.1798706054688	2	539.763506	1077.51246	-0.79572	-0.0004295	0.039874	2.1523E-05	-0.75585	-0.00040798	539.7634635452388	24.455	0.70873	24.455	24.092	24.801	0					28	13	3	0	0	0	0.024574	1	6922	6922		79.596	27.328	1	11028000			44020	6877	32212	32471	42959	42959		358			-0.02319699022086752
RLQESVMEA	9	Oxidation (M)	_RLQESVM(Oxidation (M))EA_		RLQESVM(1)EA		RLQESVM(42)EA	0	0	1		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	A375_MHC_IP_R2	2	539.6878051757812	2	539.763506	1077.51246	-1.1705	-0.00063182	-0.13782	-7.4389E-05	-1.3084	-0.00070621	539.7635770645062	23.267	0.35328	23.897	23.726	24.079	0.63014					15	6	4	0	0	0	0.14858	1	7430	7430		41.956	10.687	1	13175000			44021	6877	32212	32471	42960	42960		358			-0.02319699022086752
RLQESVMEA	9	Oxidation (M)	_RLQESVM(Oxidation (M))EA_		RLQESVM(1)EA		RLQESVM(54)EA	0	0	1		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	A375_MHC_IP_R2	2	539.6873168945312	2	539.763506	1077.51246	-1.1127	-0.00060059	-0.058395	-3.152E-05	-1.1711	-0.00063211	539.7634726505224	24.071	0.81467	24.714	24.347	25.161	0.64368					28	15	3	0	0	0	0.082375	1	7747	7747		53.833	11.993	1	5829100			44022	6877	32212	32471	42961	42961		358			-0.02319699022086752
RLQESVMEA	9	Unmodified	_RLQESVMEA_					0	0	0		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-SECPEP	A375_MHC_IP_R1	1	532.1655883789062	2	531.766049	1061.51754	-0.43554	-0.00023161	-0.53664	-0.00028537	-0.97219	-0.00051698	531.7658540912286	35.497	0.86658	35.497	34.912	35.778	0					38	16	4	0	0	0	0.10362	1	11813	11813		72.968	16.791	1	8661500			44023	6877	32212	32472	42962	42962					-0.010753951594551836
RLQESVMEA	9	Unmodified	_RLQESVMEA_					0	0	0		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	A375_MHC_IP_R2	2	532.0983276367188	2	531.766049	1061.51754	-0.86692	-0.000461	-0.31151	-0.00016565	-1.1784	-0.00062665	531.7658978978325	34.703	0.65879	35.466	35.119	35.778	0.76338					29	12	3	0	0	0	0.27064	1	12639	12639		32.786	5.1569	1	12146000			44024	6877	32212	32472	42963	42963					-0.010753951594551836
RLQETLSAA	9	Unmodified	_RLQETLSAA_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	A375_MHC_IP_R1	1	495.1744079589844	2	494.774731	987.534909	-0.57362	-0.00028381	-0.015532	-7.685E-06	-0.58916	-0.0002915	494.7746680729447	32.425	0.55491	32.425	32.231	32.785	0					15	10	2	0	0	0	0.30925	1	10498	10498		49.554	19.714	1	3685300			44025	9866	32213	32473	42964	42964					0.04064268437844021
RLQETLSAA	9	Unmodified	_RLQETLSAA_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	A375_MHC_IP_R2	2	494.68255615234375	2	494.774731	987.534909	-0.49751	-0.00024616	0.16301	8.0655E-05	-0.3345	-0.0001655	494.77470119950567	31.719	0.45476	32.455	32.249	32.704	0.73691					17	8	3	0	0	0	0.20451	1	11230	11230		41.956	9.1699	1	4260200			44026	9866	32213	32473	42965	42965					0.04064268437844021
RLQHTLVSV	9	Unmodified	_RLQHTLVSV_					0	0	0		nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	MULTI-MSMS	A375_MHC_IP_R1	1	351.945068359375	3	351.545219	1051.61383	-0.36019	-0.00012662	-0.10853	-3.8152E-05	-0.46872	-0.00016477	351.54522438850785	36.782	0.40337	36.782	36.592	36.996	0					13	7	2	0	0	0	0.67787	1	12374	12374		8.9762	1.0308	1	2385100			44027	3847	32214	32474	42966	42966					0.09008540462809833
RLQHTLVSV	9	Unmodified	_RLQHTLVSV_					0	0	0		nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	MULTI-MSMS	A375_MHC_IP_R2	2	351.9449157714844	3	351.545219	1051.61383	-0.43026	-0.00015126	0.53117	0.00018673	0.10091	3.5474E-05	351.5454377786263	35.697	0.55735	36.461	36.081	36.638	0.76338					15	10	2	0	0	0	0.21241	1	12968	12968		37.075	18.702	1	3276100			44028	3847	32214	32474	42967	42967					0.09008540462809833
RLQKAELESFL	11	Unmodified	_RLQKAELESFL_					0	0	0			REV__ENSG00000141371|ENST00000269127|CHCT1	REV__ENSG00000141371|ENST00000269127|CHCT1	MSMS	A375_MHC_IP_R1	1	667.7611694335938	2	667.377352	1332.74015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.02	1	120.02	119.52	120.52	0								0	0	0	0.15488	1	44430	44430		17.443	2.1942	1		+		44029	19257	32215	32475	42968	42968					0.08709002177397451
RLQKELAEA	9	Unmodified	_RLQKELAEA_					0	0	0		nc|ENSG00000085978|Q676U5-2|ATG16L1;ENSG00000085978|ENST00000392017|ATG16L1;ENST00000474148.5_1_2:234160473-234181699:+|nuORF;nc|ENSG00000085978|Q676U5-4|ATG16L1;nc|ENSG00000085978|Q676U5-5|ATG16L1;nc|ENSG00000085978|Q676U5-3|ATG16L1;ENST00000479942.5_1_2:234160473-234198706:+|nuORF	nc|ENSG00000085978|Q676U5-2|ATG16L1	nc|ENSG00000085978|Q676U5-2|ATG16L1	MULTI-SECPEP	A375_MHC_IP_R1	1	529.7031860351562	2	529.303655	1056.59276	-0.33343	-0.00017648	-0.37576	-0.00019889	-0.70919	-0.00037538	529.3034511976064	21.264	0.6096	21.264	20.844	21.454	0					25	11	3	0	0	0	0.27114	1	5534	5534		53.404	14.789	1	5980900			44030	1822	32216	32476	42969	42969					0.0667253036326656
RLQKELAEA	9	Unmodified	_RLQKELAEA_					0	0	0		nc|ENSG00000085978|Q676U5-2|ATG16L1;ENSG00000085978|ENST00000392017|ATG16L1;ENST00000474148.5_1_2:234160473-234181699:+|nuORF;nc|ENSG00000085978|Q676U5-4|ATG16L1;nc|ENSG00000085978|Q676U5-5|ATG16L1;nc|ENSG00000085978|Q676U5-3|ATG16L1;ENST00000479942.5_1_2:234160473-234198706:+|nuORF	nc|ENSG00000085978|Q676U5-2|ATG16L1	nc|ENSG00000085978|Q676U5-2|ATG16L1	MULTI-MSMS	A375_MHC_IP_R2	2	529.7029418945312	2	529.303655	1056.59276	-0.85895	-0.00045465	-0.24382	-0.00012906	-1.1028	-0.0005837	529.3034390494591	19.486	0.55832	20.093	19.787	20.345	0.60688					26	10	3	0	0	0	0.10622	1	5977	5977		49.554	12.48	1	2781000			44031	1822	32216	32476	42970	42970					0.0667253036326656
RLQKQLTEHL	10	Unmodified	_RLQKQLTEHL_					0	0	0		ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	MULTI-MSMS	A375_MHC_IP_R2	2	633.7694091796875	2	633.369861	1264.72517	-0.60736	-0.00038468	-0.93129	-0.00058985	-1.5387	-0.00097454	633.3689980734995	138.78	1.5133	138.84	137.99	139.5	0.059906					41	29	2	0	0	0	0.72591	1	54235	54235		1.6526	0	1	970420			44032	2345	32217	32477	42971	42971					0.10339555100085818
RLQPPPAQA	9	Unmodified	_RLQPPPAQA_					0	0	0		IER2|p.E168K|1|0.31|ENSG00000160888|chr19:13153688-13153688|G/A|missense_variant;ENSG00000160888|ENST00000292433|IER2	IER2|p.E168K|1|0.31|ENSG00000160888|chr19:13153688-13153688|G/A|missense_variant	IER2|p.E168K|1|0.31|ENSG00000160888|chr19:13153688-13153688|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	489.27850341796875	2	489.279983	976.545414	-0.37667	-0.0001843	-0.15972	-7.8148E-05	-0.53639	-0.00026245	489.27983768582266	25.602	0.91349	25.602	25.053	25.966	0					29	17	2	0	0	0	0.14922	1	7320	7320		41.84	5.7126	1	5423000			44033	6449	32218	32478	42972	42972					0.05620295882931714
RLQPPPAQA	9	Unmodified	_RLQPPPAQA_					0	0	0		IER2|p.E168K|1|0.31|ENSG00000160888|chr19:13153688-13153688|G/A|missense_variant;ENSG00000160888|ENST00000292433|IER2	IER2|p.E168K|1|0.31|ENSG00000160888|chr19:13153688-13153688|G/A|missense_variant	IER2|p.E168K|1|0.31|ENSG00000160888|chr19:13153688-13153688|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	489.2780456542969	2	489.279983	976.545414	-0.9704	-0.0004748	0.16406	8.027E-05	-0.80634	-0.00039453	489.2799933666979	24.939	0.81536	25.583	25.212	26.028	0.64368					30	15	3	0	0	0	0.11629	2	8186	8186;8266		47.749	5.9091	1	6131700			44034	6449	32218	32478	42973;42974	42973					0.05620295882931714
RLQPVPHFF	9	Unmodified	_RLQPVPHFF_					0	0	0			REV__FAM210A|p.R82Ifs*55|1|0.06|ENSG00000177150|chr18:13681831-13681834|GGCG/-|frameshift_variant	REV__FAM210A|p.R82Ifs*55|1|0.06|ENSG00000177150|chr18:13681831-13681834|GGCG/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	380.9148864746094	3	380.881943	1139.624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.116	1	58.116	57.616	58.616	0								0	0	0	0.15486	1	20871	20871		8.1555	0.54658	1		+		44035	26611	32219	32479	42975	42975					0.05977148188026149
RLQSEVAEL	9	Unmodified	_RLQSEVAEL_					0	0	0		nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF;nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-2|IST1	nc|ENSG00000182149|P53990-2|IST1	MULTI-MSMS	A375_MHC_IP_R1	1	523.1873779296875	2	522.787838	1043.56112	-0.50116	-0.000262	-0.6836	-0.00035738	-1.1848	-0.00061938	522.7876242933113	47.413	0.51218	47.413	47.055	47.567	0					16	9	3	0	0	0	0.29123	1	16684	16684		31.268	1.4278	1	2289100			44036	8377	32220	32480	42976	42976					0.04108537609317864
RLQSKTIKV	9	Unmodified	_RLQSKTIKV_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	A375_MHC_IP_R1	1	358.6325378417969	3	358.232752	1071.67643	-0.086361	-3.0937E-05	-0.23643	-8.4696E-05	-0.32279	-0.00011563	358.2326790738976	19.401	0.30355	19.401	19.268	19.571	0					13	5	3	0	0	0	0.056914	2	4834	4818;4834		57.108	40.059	1	6839000			44037	1401	32221	32481	42977;42978	42978					0.14345686530987223
RLRAALRPRPR	11	Unmodified	_RLRAALRPRPR_					0	0	0		ENST00000221665.4_1_19:56104161-56104986:-|nuORF	ENST00000221665.4_1_19:56104161-56104986:-|nuORF	ENST00000221665.4_1_19:56104161-56104986:-|nuORF	MSMS	A375_MHC_IP_R2	2	681.8402709960938	2	681.439278	1360.864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.85	1	144.87	144.37	145.37	0.021408								0	0	0	0.16354	1	56569	56569		0.30703	0.03801	1				44038	10109	32222	32482	42979	42979					0.1980056257891647
RLRALPGHQF	10	Unmodified	_RLRALPGHQF_					0	0	0		ENST00000376509.4_1_X:48776104-48776263:-|nuORF	ENST00000376509.4_1_X:48776104-48776263:-|nuORF	ENST00000376509.4_1_X:48776104-48776263:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	399.6344299316406	3	398.899996	1193.67816	-0.16593	-6.6191E-05	0.099799	3.981E-05	-0.066136	-2.6382E-05	398.9000350362804	28.434	1.1644	28.434	28.088	29.252	0					70	22	5	0	0	0	0.7086	1	8713	8713		8.4443	8.4443	1	143780000			44039	11284	32223	32483	42980	42980					0.0890674033958021
RLRAPAPHR	9	Unmodified	_RLRAPAPHR_					0	0	0		ENST00000449537.1_1_7:26438397-26438930:+|nuORF	ENST00000449537.1_1_7:26438397-26438930:+|nuORF	ENST00000449537.1_1_7:26438397-26438930:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1074.0439453125	1	1073.64391	1072.63663	0.26795	0.00028768	-0.29742	-0.00031932	-0.029471	-3.1642E-05	1073.6432414697085	149.51	1.4247	149.53	148.48	149.9	0.01825					99	47	3	0	0	0	0.7724	1	58019	58019		0.52476	0	1	170240			44040	12060	32224	32484	42981	42981					0.10321604370915338
RLREQRQRRHY	11	Unmodified	_RLREQRQRRHY_					0	0	0			REV__nc|ENSG00000019144|Q86UU1-2|PHLDB1	REV__nc|ENSG00000019144|Q86UU1-2|PHLDB1	MULTI-SECPEP	A375_MHC_IP_R1	1	533.7002563476562	3	533.301334	1596.88217	-0.7089	-0.00037806	-0.86627	-0.00046198	-1.5752	-0.00084004	533.3009352417592	46.48	0.45348	46.48	46.245	46.699	0					18	8	3	0	0	0	1.0015	1	16332	16332		0.094841	0	1	5145200	+		44041	16258	32225	32485	42982	42982					0.10760652762951395
RLRESLDLF	9	Unmodified	_RLRESLDLF_					0	0	0		nc|ENSG00000141404|P38405-3|GNAL;nc|ENSG00000141404|P38405|GNAL;ENSG00000141404|ENST00000334049|GNAL	nc|ENSG00000141404|P38405-3|GNAL	nc|ENSG00000141404|P38405-3|GNAL	MULTI-SECPEP	A375_MHC_IP_R1	1	382.9404296875	3	383.552262	1147.63496	0.29463	0.00011301	0.11403	4.3738E-05	0.40867	0.00015675	383.55249429484485	57.746	0.20392	57.746	57.618	57.822	0					5	3	2	0	0	0	0.46045	1	20692	20692		21.59	6.3417	1	626430			44042	5236	32226	32486	42983	42983					0.06704505771654112
RLRETEILF	9	Unmodified	_RLRETEILF_					0	0	0		ENST00000464829.5_1_9:33469994-33473843:-|nuORF;nc|ENSG00000165271|Q9H6R4-3|NOL6;nc|ENSG00000165271|Q9H6R4-2|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6;ENSG00000165271|ENST00000297990|NOL6	ENST00000464829.5_1_9:33469994-33473843:-|nuORF	ENST00000464829.5_1_9:33469994-33473843:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	393.2959289550781	3	392.896029	1175.66626	0.1109	4.3571E-05	-0.015996	-6.2849E-06	0.094902	3.7287E-05	392.895963005239	63.63	0.76408	63.63	63.377	64.141	0					30	14	4	0	0	0	0.53098	1	23022	23022		33.445	8.4539	1	2872900			44043	6933	32227	32487	42984	42984					0.08545078805741468
RLRETEILF	9	Unmodified	_RLRETEILF_					0	0	0		ENST00000464829.5_1_9:33469994-33473843:-|nuORF;nc|ENSG00000165271|Q9H6R4-3|NOL6;nc|ENSG00000165271|Q9H6R4-2|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6;ENSG00000165271|ENST00000297990|NOL6	ENST00000464829.5_1_9:33469994-33473843:-|nuORF	ENST00000464829.5_1_9:33469994-33473843:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	393.2958679199219	3	392.896029	1175.66626	-0.26101	-0.00010255	0.20466	8.041E-05	-0.056346	-2.2138E-05	392.89606986726255	62.545	0.50613	63.288	63.028	63.534	0.74263					21	9	3	0	0	0	0.69179	1	23702	23702		21.59	7.1848	1	3035200			44044	6933	32227	32487	42985	42985					0.08545078805741468
RLRHMVSDKF	10	Unmodified	_RLRHMVSDKF_					0	0	0		nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-5|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B	nc|ENSG00000125630|Q9H9Y6-4|POLR1B	nc|ENSG00000125630|Q9H9Y6-4|POLR1B	MULTI-SECPEP	A375_MHC_IP_R2	2	429.6275329589844	3	430.23628	1287.68701	-0.29547	-0.00012712	-0.85786	-0.00036908	-1.1533	-0.00049621	430.2357457184031	45.19	0.40455	45.955	45.746	46.15	0.76519					12	7	2	0	0	0	0.92957	1	16839	16839		5.7834	0	1	1812700			44045	3972	32228	32488	42986	42986					0.054673459137575264
RLRHMVSDKF	10	Unmodified	_RLRHMVSDKF_					0	0	0		nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-5|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B	nc|ENSG00000125630|Q9H9Y6-4|POLR1B	nc|ENSG00000125630|Q9H9Y6-4|POLR1B	MULTI-MATCH	A375_MHC_IP_R1	1		3	430.23628	1287.68701	-0.12056	-5.1868E-05	-0.7254	-0.00031209	-0.84596	-0.00036396	430.5704096088937	46.179	0.35184	46.179	46.043	46.395	0	0.11202	6.8058E-05	NaN	5.7834	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	926300			44046	3972	32228	32488							0.054673459137575264
RLRKERFERRQ	11	Unmodified	_RLRKERFERRQ_					0	0	0			REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP	REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-SECPEP	A375_MHC_IP_R2	2	787.8600463867188	2	787.460939	1572.90732	-0.89557	-0.00070523	0.43422	0.00034193	-0.46135	-0.00036329	787.4610702087208	134.07	1.1197	134.24	133.5	134.62	0.16487					81	21	5	0	0	0	1.0012	1	52824	52824		1.0715	0.76443	1	44501000	+		44047	17345	32229	32489	42987	42987					0.14378707565538207
RLRKRRLPRK	10	Unmodified	_RLRKRRLPRK_					0	0	0		ENST00000378223.3_1_1:3773558-3773771:-|nuORF	ENST00000378223.3_1_1:3773558-3773771:-|nuORF	ENST00000378223.3_1_1:3773558-3773771:-|nuORF	MSMS	A375_MHC_IP_R2	2	690.1055908203125	2	689.970745	1377.92694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.74	1	115.43	114.93	115.93	0.68999								0	0	0	0.15642	1	43248	43248		0	0	1				44048	11309	32230	32490	42988	42988					0.2530912836693915
RLRKRYILFS	10	Unmodified	_RLRKRYILFS_					0	0	0		tr|U7SGH6|U7SGH6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02206PE=4SV=1	tr|U7SGH6|U7SGH6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02206PE=4SV=1	tr|U7SGH6|U7SGH6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02206PE=4SV=1	MSMS	A375_MHC_IP_R2	2	676.4923095703125	2	676.419688	1350.82482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.68	1	101.44	100.94	101.94	0.76278								0	0	0	0.15541	1	38170	38170		3.2813	0.28607	1				44049	29407	32231	32491	42989	42989					0.16344417504683406
RLRLEHRRLHN	11	Unmodified	_RLRLEHRRLHN_					0	0	0			REV__nc|ENSG00000183963|P53814-6|SMTN	REV__nc|ENSG00000183963|P53814-6|SMTN	MSMS	A375_MHC_IP_R1	1	500.6563720703125	3	500.630791	1498.87055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.55	1	133.55	133.05	134.05	0								0	0	0	0.16352	1	51501	51501		0.40827	0.26837	1		+		44050	27402	32232	32492	42990	42990					0.14106455739647572
RLRMVWRRKRK	11	Unmodified	_RLRMVWRRKRK_					0	0	0		ENST00000285689.7_2_5:125759302-125805397:+|nuORF;ENST00000544396.5_2_5:125759302-125807964:+|nuORF;nc|ENSG00000155324|Q96HH9-2|GRAMD2B	ENST00000285689.7_2_5:125759302-125805397:+|nuORF	ENST00000285689.7_2_5:125759302-125805397:+|nuORF	MSMS	A375_MHC_IP_R2	2	792.576171875	2	792.996437	1583.97832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.92	1	140.97	140.47	141.47	0.04216								0	0	0	0.1636	1	55143	55143		0	0	1				44051	10448	32233	32493	42991	42991					0.20969129069339942
RLRNGADDTEM	11	Unmodified	_RLRNGADDTEM_					0	0	0			REV__ENST00000575519.1_1_17:6553649-6554890:-|nuORF	REV__ENST00000575519.1_1_17:6553649-6554890:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	426.9345703125	3	426.534942	1276.583	-0.3849	-0.00016417	-0.33054	-0.00014099	-0.71544	-0.00030516	426.5348268390808	66.964	0.56142	66.964	66.632	67.194	0					17	10	2	0	0	0	0.73472	1	24261	24261		4.4062	0.81909	1	3182400	+		44052	17543	32234	32494	42992	42992					-0.04423025704409156
RLRRELDMRVK	11	Unmodified	_RLRRELDMRVK_					0	0	0			REV__ENSG00000175985|ENST00000322564|PLEKHD1	REV__ENSG00000175985|ENST00000322564|PLEKHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	369.4445495605469	4	368.72141	1470.85653	-0.045404	-1.6741E-05	-0.048112	-1.774E-05	-0.093516	-3.4481E-05	368.721291636123	26.512	0.40514	26.512	26.271	26.677	0					10	7	2	0	0	0	1.0012	1	7979	7979		1.2148	1.1416	1	1047800	+		44053	21380	32235	32495	42993	42993					0.1399404219630469
RLRRPRESRLS	11	Unmodified	_RLRRPRESRLS_					0	0	0		ENST00000510746.1_1_4:69209793-69215570:-|nuORF	ENST00000510746.1_1_4:69209793-69215570:-|nuORF	ENST00000510746.1_1_4:69209793-69215570:-|nuORF	MSMS	A375_MHC_IP_R1	1	713.4105834960938	2	713.429107	1424.84366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.79	1	123.79	123.29	124.29	0								0	0	0	0.16258	1	46344	46344		5.2969	2.5617	1				44054	12901	32236	32496	42994	42994					0.1482334712843567
RLRRQERERKF	11	Unmodified	_RLRRQERERKF_					0	0	0		ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	MULTI-MSMS	A375_MHC_IP_R1	1	526.6943359375	3	525.309718	1572.90732	-0.7478	-0.00039283	-0.05086	-2.6717E-05	-0.79866	-0.00041955	525.3095902274521	134.19	1.2184	134.19	133.3	134.52	0					116	23	6	0	0	0	0.73891	1	51713	51713		0.40827	0	1	156730000			44055	6372	32237	32497	42995	42995					0.1437870756551547
RLRRQERERKF	11	Unmodified	_RLRRQERERKF_					0	0	0		ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	MULTI-MSMS	A375_MHC_IP_R1	1	525.7089233398438	3	525.309718	1572.90732	-0.83508	-0.00043867	-0.36269	-0.00019053	-1.1978	-0.0006292	525.3093736693486	141.77	1.8384	141.77	140.6	142.44	0					64	35	3	0	0	0	0.73934	2	54102	54102;54303		0	0	1	2210800			44056	6372	32237	32497	42996;42997	42996					0.1437870756551547
RLRRQERERKF	11	Unmodified	_RLRRQERERKF_					0	0	0		ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	MULTI-MSMS	A375_MHC_IP_R2	2	526.6942749023438	3	525.309718	1572.90732	-0.39216	-0.000206	-0.11231	-5.9E-05	-0.50447	-0.000265	525.3095589765572	134.11	1.2722	134.28	133.4	134.67	0.16487					123	24	6	0	0	0	0.73891	1	52692	52692		0.40827	0	1	166710000			44057	6372	32237	32497	42998	42998					0.1437870756551547
RLRRQERERKF	11	Unmodified	_RLRRQERERKF_					0	0	0		ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	MULTI-MSMS	A375_MHC_IP_R2	2	525.7093505859375	3	525.309718	1572.90732	-0.30064	-0.00015793	-0.3979	-0.00020902	-0.69854	-0.00036695	525.3094662844633	139.49	0.75208	139.55	139.15	139.9	0.059906					25	14	2	0	0	0	0.73934	1	54694	54694		0	0	1	1470900			44058	6372	32237	32497	42999	42999					0.1437870756551547
RLRRQERERKF	11	Unmodified	_RLRRQERERKF_					0	0	0		ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	MULTI-MSMS	A375_MHC_IP_R2	2	525.7091674804688	3	525.309718	1572.90732	-0.29861	-0.00015686	-0.63658	-0.0003344	-0.93518	-0.00049126	525.3093489029281	140.11	1.0237	140.17	139.85	140.88	0.059906					40	19	3	0	0	0	0.73934	1	54888	54888		0	0	1	3897900			44059	6372	32237	32497	43000	43000					0.1437870756551547
RLRRQERERKF	11	Unmodified	_RLRRQERERKF_					0	0	0		ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	MULTI-MSMS	A375_MHC_IP_R2	2	526.0440673828125	3	525.309718	1572.90732	-0.29664	-0.00015583	-0.36348	-0.00019094	-0.66012	-0.00034677	525.3094367949565	141.8	1.6333	141.83	140.85	142.48	0.030731					65	31	3	0	0	0	0.73934	2	55120	55120;55372		0	0	1	1725000			44060	6372	32237	32497	43001;43002	43001					0.1437870756551547
RLRRQRALWKE	11	Unmodified	_RLRRQRALWKE_					0	0	0			REV__nc|ENSG00000131149|Q14687-2|GSE1	REV__nc|ENSG00000131149|Q14687-2|GSE1	MULTI-SECPEP	A375_MHC_IP_R2	2	757.1735229492188	2	756.455125	1510.8957	-0.6969	-0.00052718	-0.66779	-0.00050516	-1.3647	-0.0010323	756.9560977892471	114.72	0.51088	115.41	115.32	115.83	0.68999					17	9	3	0	0	0	1.0011	1	43273	43273		1.0715	0.72083	1	2746800	+		44061	18592	32238	32498	43003	43003					0.1606851054220897
RLRRRLPAA	9	Unmodified	_RLRRRLPAA_					0	0	0			REV__ENST00000545654.5_1_11:95522396-95522864:-|nuORF	REV__ENST00000545654.5_1_11:95522396-95522864:-|nuORF	MSMS	A375_MHC_IP_R2	2	370.2767639160156	3	370.243986	1107.71013	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.366	1	31.084	30.584	31.584	0.71857								0	0	0	0.15486	1	10670	10670		2.7352	0.23671	1		+		44062	25995	32239	32499	43004	43004					0.1605815281343439
RLRRRRRTQRN	11	Unmodified	_RLRRRRRTQRN_					0	0	0			REV__ENSG00000135144|ENST00000548759|DTX1	REV__ENSG00000135144|ENST00000548759|DTX1	MSMS	A375_MHC_IP_R1	1	784.5530395507812	2	784.483071	1566.95159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.892	1	93.892	93.392	94.392	0								0	0	0	0.16358	1	34512	34512		0.30703	0.30703	1		+		44063	18827	32240	32500	43005	43005					0.1907915650240284
RLRRRRWWVPM	11	Unmodified	_RLRRRRWWVPM_					0	0	0			REV__ENST00000521399.5_1_8:67834613-67837726:-|nuORF	REV__ENST00000521399.5_1_8:67834613-67837726:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	538.3812255859375	3	537.980767	1610.92047	-0.67637	-0.00036387	0.083998	4.5189E-05	-0.59237	-0.00031868	537.9814830979354	142.5	1.5708	142.53	141.62	143.19	0.030731					39	30	2	0	0	0	1.0015	1	55672	55672		0	0	1	4209500	+		44064	25712	32241	32501	43006	43006					0.1394486714393679
RLRRRWPRKQ	10	Unmodified	_RLRRRWPRKQ_					0	0	0			REV__ENST00000487247.5_1_7:75612754-75613000:+|nuORF	REV__ENST00000487247.5_1_7:75612754-75613000:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	485.03594970703125	3	484.635877	1450.8858	-0.25954	-0.00012578	0.43262	0.00020966	0.17308	8.3882E-05	484.63609944726693	25.079	0.40442	25.079	24.953	25.357	0					16	7	4	0	0	0	0.72006	1	7277	7277		3.3196	3.3196	1	12697000	+		44065	25332	32242	32502	43007	43007					0.17839367327474065
RLRRRWPRKQ	10	Unmodified	_RLRRRWPRKQ_					0	0	0			REV__ENST00000487247.5_1_7:75612754-75613000:+|nuORF	REV__ENST00000487247.5_1_7:75612754-75613000:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	484.635877	1450.8858	-0.25954	-0.00012578	0.43262	0.00020966	0.17308	8.3882E-05	484.63609944726693	25.079	0.40442	25.079	24.953	25.357	0	-0.028384	-0.00033738	NaN	3.3196	16	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12697000	+		44066	25332	32242	32502							0.17839367327474065
RLRRRWPRKQ	10	Unmodified	_RLRRRWPRKQ_					0	0	0			REV__ENST00000487247.5_1_7:75612754-75613000:+|nuORF	REV__ENST00000487247.5_1_7:75612754-75613000:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	484.635877	1450.8858	-0.92414	-0.00044787	0.87291	0.00042305	-0.051228	-2.4827E-05	484.97061789323317	24.492	0.40631	25.136	24.958	25.364	0.64368	0.028384	0.00030277	NaN	3.3196	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11786000	+		44067	25332	32242	32502							0.17839367327474065
RLRRRWPRKQN	11	Unmodified	_RLRRRWPRKQN_					0	0	0			REV__ENST00000487247.5_1_7:75612754-75613000:+|nuORF	REV__ENST00000487247.5_1_7:75612754-75613000:+|nuORF	MSMS	A375_MHC_IP_R2	2	783.7459716796875	2	783.471641	1564.92873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.05	1	130.26	129.76	130.76	0.2142								0	0	0	0.16354	1	51113	51113		0.30703	0.30703	1		+		44068	25332	32243	32503	43008	43008					0.16886137384904032
RLRSFWLLRR	10	Unmodified	_RLRSFWLLRR_					0	0	0		ENST00000300853.7_1_19:45912063-45912522:-|nuORF	ENST00000300853.7_1_19:45912063-45912522:-|nuORF	ENST00000300853.7_1_19:45912063-45912522:-|nuORF	MSMS	A375_MHC_IP_R2	2	701.9557495117188	2	701.930754	1401.84696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.84	1	101.6	101.1	102.1	0.76278								0	0	0	0.15596	1	38227	38227		1.4819	0.15237	1				44069	10538	32244	32504	43009	43009					0.16210641973088968
RLRSLDIRC	9	Unmodified	_RLRSLDIRC_					0	0	0		nc|ENSG00000115421|Q9BWT3-2|PAPOLG;ENSG00000115421|ENST00000238714|PAPOLG	nc|ENSG00000115421|Q9BWT3-2|PAPOLG	nc|ENSG00000115421|Q9BWT3-2|PAPOLG	MULTI-MSMS	A375_MHC_IP_R2	2	378.6120910644531	3	377.885358	1130.63425	0.032065	1.2117E-05	0.71363	0.00026967	0.74569	0.00028179	377.8856506856394	50.645	1.6201	51.399	50.702	52.322	0.75406					100	31	5	0	0	0	0.55818	1	18779	18779		11.495	0	1	262850000			44070	3307	32245	32505	43010	43010					0.07415387850960542
RLRSVIREY	9	Unmodified	_RLRSVIREY_					0	0	0			REV__nc|ENSG00000112667|O43598-2|DNPH1	REV__nc|ENSG00000112667|O43598-2|DNPH1	MULTI-MSMS	A375_MHC_IP_R2	2	398.303466796875	3	397.903406	1190.68839	-0.34042	-0.00013545	-0.049021	-1.9505E-05	-0.38944	-0.00015496	397.90338079054936	23.881	0.66172	24.511	24.283	24.944	0.63014					30	12	4	0	0	0	0.56584	1	7808	7808		16.566	5.6669	1	70830000	+		44071	17746	32246	32506	43011	43011					0.10067303274172446
RLSDQVLFV	9	Unmodified	_RLSDQVLFV_					0	0	0		nc|ENSG00000153066|Q6PKC3-3|TXNDC11;ENSG00000153066|ENST00000283033|TXNDC11;nc|ENSG00000153066|Q6PKC3|TXNDC11	nc|ENSG00000153066|Q6PKC3-3|TXNDC11	nc|ENSG00000153066|Q6PKC3-3|TXNDC11	MULTI-MSMS	A375_MHC_IP_R1	1	539.2081909179688	2	538.808574	1075.60259	-0.53576	-0.00028867	0.26944	0.00014517	-0.26632	-0.0001435	538.8086914182501	88.821	1.0156	88.821	88.51	89.526	0					44	19	4	0	0	0	0.41879	1	32585	32585		23.79	2.2528	1	15449000			44072	6003	32247	32507	43012	43012					0.06781718368665679
RLSEAIVTV	9	Unmodified	_RLSEAIVTV_					0	0	0		ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	MULTI-SECPEP	A375_MHC_IP_R2	2	494.20294189453125	2	494.295299	986.576045	-0.87543	-0.00043272	-0.13008	-6.43E-05	-1.0055	-0.00049702	494.2952194259035	58.974	1.5186	59.721	59.438	60.957	0.74714					74	29	4	0	0	0	0.087712	1	22337	22337		66.457	1.2217	1	57025000			44073	6378	32248	32508	43013	43013					0.08222029477326487
RLSEFIPAVF	10	Unmodified	_RLSEFIPAVF_					0	0	0		ENST00000523397.1_1_8:126095350-126096053:-|nuORF;ENSG00000164961|ENST00000318410|WASHC5	ENST00000523397.1_1_8:126095350-126096053:-|nuORF	ENST00000523397.1_1_8:126095350-126096053:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	590.2322387695312	2	589.832049	1177.64954	-0.51264	-0.00030237	-0.16053	-9.4689E-05	-0.67318	-0.00039706	589.8318402508498	119.58	0.55866	120.11	119.79	120.34	0.5321					16	10	2	0	0	0	0.29801	2	45544	45544;45655		40.239	19.825	1	21046000			44074	6899	32249	32509	43014;43015	43014					0.06782577919784671
RLSEKNIIK	9	Unmodified	_RLSEKNIIK_					0	0	0			REV__nc|ENSG00000131781|P49326-3|FMO5	REV__nc|ENSG00000131781|P49326-3|FMO5	MULTI-SECPEP	A375_MHC_IP_R1	1	367.96435546875	3	367.564391	1099.67134	0.23674	8.7016E-05	0.41353	0.000152	0.65026	0.00023901	367.564460849626	19.918	0.25404	19.918	19.776	20.03	0					7	4	2	0	0	0	0.41434	1	5057	5057		24.882	9.9244	1	1652000	+		44075	27227	32250	32510	43016	43016					0.1254938266836234
RLSELVQAV	9	Unmodified	_RLSELVQAV_					0	0	0		ENSG00000166340|ENST00000299427|TPP1;ENST00000524903.1_1_11:6639992-6640524:-|nuORF;ENST00000531754.1_1_11:6639992-6640658:-|nuORF;ENST00000428886.6_1_11:6638445-6640631:-|nuORF	ENSG00000166340|ENST00000299427|TPP1	ENSG00000166340|ENST00000299427|TPP1	MULTI-SECPEP	A375_MHC_IP_R1	1	507.98065185546875	2	507.800749	1013.58694	-0.47335	-0.00024037	-0.16582	-8.4202E-05	-0.63917	-0.00032457	508.30205152672727	64.92	0.86333	64.92	64.393	65.257	0					56	16	4	0	0	0	0.16764	1	23457	23457		51.63	20.361	1	16664000			44076	7060	32251	32511	43017	43017					0.08069431851617992
RLSETDFKV	9	Unmodified	_RLSETDFKV_					0	0	0		ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP	ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	MULTI-SECPEP	A375_MHC_IP_R1	1	547.1702880859375	2	547.795663	1093.57677	-0.90363	-0.000495	0.078066	4.2764E-05	-0.82556	-0.00045224	547.7956752349609	41.363	0.45716	41.363	41.114	41.571	0					19	8	3	0	0	0	0.30133	1	14284	14284		37.075	18.702	1	6936400			44077	5624	32252	32512	43018	43018					0.03372824126358864
RLSETDFKV	9	Unmodified	_RLSETDFKV_					0	0	0		ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP	ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	MULTI-MSMS	A375_MHC_IP_R2	2	548.1951904296875	2	547.795663	1093.57677	-0.89279	-0.00048906	0.38199	0.00020925	-0.5108	-0.00027981	547.7958418541605	40.502	0.45766	41.277	41.082	41.54	0.77451					22	8	4	0	0	0	0.073067	1	15014	15014		55.503	13.547	1	7408000			44078	5624	32252	32512	43019	43019					0.03372824126358864
RLSFSRPFQS	10	Unmodified	_RLSFSRPFQS_					0	0	0		ENSG00000159495|ENST00000452443|TGM7	ENSG00000159495|ENST00000452443|TGM7	ENSG00000159495|ENST00000452443|TGM7	MSMS	A375_MHC_IP_R1	1	408.6229248046875	3	408.887645	1223.64111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.832	1	73.832	73.332	74.332	0								0	0	0	0.15515	1	26890	26890		4.1166	0.52957	1				44079	6376	32253	32513	43020	43020					0.03823024003190767
RLSGLAARLIG	11	Unmodified	_RLSGLAARLIG_					0	0	0		ENST00000258052.7_1_6:109762072-109762177:+|nuORF	ENST00000258052.7_1_6:109762072-109762177:+|nuORF	ENST00000258052.7_1_6:109762072-109762177:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	377.2649841308594	3	376.240018	1125.69823	0.30373	0.00011427	-2.5376	-0.00095475	-2.2339	-0.00084048	376.2398890791116	31.963	1.0199	31.963	31.465	32.485	0					63	19	5	0	0	0	0.7328	1	10081	10081		6.2344	1.1868	1	21442000			44080	10254	32254	32514	43021	43021					0.14040491279547496
RLSKFKYRKLN	11	Unmodified	_RLSKFKYRKLN_					0	0	0			REV__ACSM4|p.D331N|1|0.16|ENSG00000215009|chr12:7320794-7320794|G/A|missense_variant	REV__ACSM4|p.D331N|1|0.16|ENSG00000215009|chr12:7320794-7320794|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	485.36395263671875	3	484.964777	1451.8725	-0.65735	-0.00031879	-0.91463	-0.00044357	-1.572	-0.00076236	484.9642229406665	41.41	0.4574	41.41	41.164	41.622	0					25	8	5	0	0	0	0.7353	1	14280	14280		3.8459	0	1	7901300	+		44081	15302	32255	32515	43022	43022					0.16464071704876915
RLSKFKYRKLN	11	Unmodified	_RLSKFKYRKLN_					0	0	0			REV__ACSM4|p.D331N|1|0.16|ENSG00000215009|chr12:7320794-7320794|G/A|missense_variant	REV__ACSM4|p.D331N|1|0.16|ENSG00000215009|chr12:7320794-7320794|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	484.964777	1451.8725	-0.71613	-0.0003473	-0.5204	-0.00025238	-1.2365	-0.00059967	484.9645147679153	40.526	0.50779	41.301	41.082	41.59	0.77451	-0.054529	0.0001879	NaN	3.8459	28	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5782100	+		44082	15302	32255	32515							0.16464071704876915
RLSNRVVRV	9	Unmodified	_RLSNRVVRV_					0	0	0		ENSG00000147592|ENST00000276590|LACTB2	ENSG00000147592|ENST00000276590|LACTB2	ENSG00000147592|ENST00000276590|LACTB2	MULTI-MSMS	A375_MHC_IP_R1	1	366.9524230957031	3	366.899996	1097.67816	-0.023336	-8.5621E-06	0.28355	0.00010404	0.26022	9.5473E-05	366.90007012719144	23.457	0.56031	23.457	23.278	23.838	0					29	10	5	0	0	0	0.135	2	6422	6422;6469		44.392	19.51	1	42800000			44083	5693	32256	32516	43023;43024	43023					0.1332274033959493
RLSNRVVRV	9	Unmodified	_RLSNRVVRV_					0	0	0		ENSG00000147592|ENST00000276590|LACTB2	ENSG00000147592|ENST00000276590|LACTB2	ENSG00000147592|ENST00000276590|LACTB2	MULTI-MSMS	A375_MHC_IP_R2	2	366.952392578125	3	366.899996	1097.67816	-0.19838	-7.2785E-05	0.32825	0.00012043	0.12987	4.7649E-05	366.90011055019625	20.728	1.1161	21.339	20.803	21.919	0.61029					63	21	4	0	0	0	0.095445	2	6482	6385;6482		51.488	20.785	1	8578500			44084	5693	32256	32516	43025;43026	43026					0.1332274033959493
RLSNRVVRV	9	Unmodified	_RLSNRVVRV_					0	0	0		ENSG00000147592|ENST00000276590|LACTB2	ENSG00000147592|ENST00000276590|LACTB2	ENSG00000147592|ENST00000276590|LACTB2	MSMS	A375_MHC_IP_R2	2	366.95245361328125	3	366.899996	1097.67816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.161	1	23.791	23.291	24.291	0.63014								0	0	0	0.15356	1	7410	7410		15.739	9.9552	1				44085	5693	32256	32516	43027	43027					0.1332274033959493
RLSPHPAGP	9	Unmodified	_RLSPHPAGP_					0	0	0		ENSG00000074047|ENST00000361492|GLI2;nc|ENSG00000074047|P10070|GLI2;ENST00000482119.5_1_2:121554896-121709026:+|nuORF	ENSG00000074047|ENST00000361492|GLI2	ENSG00000074047|ENST00000361492|GLI2	MULTI-SECPEP	A375_MHC_IP_R2	2	466.65814208984375	2	466.259051	930.503549	-0.79803	-0.00037209	-0.86871	-0.00040505	-1.6667	-0.00077714	466.2584006500156	28.067	0.70904	28.745	28.351	29.06	0.67857					21	13	2	0	0	0	0.50702	1	9667	9667		25.399	3.6527	1	2669700			44086	1575	32257	32517	43028	43028					0.035517401944161975
RLSPVSPAL	9	Unmodified	_RLSPVSPAL_					0	0	0		ENSG00000168806|ENST00000305641|LCMT2;ENST00000567039.1_1_15:43620629-43622752:-|nuORF	ENSG00000168806|ENST00000305641|LCMT2	ENSG00000168806|ENST00000305641|LCMT2	MULTI-MSMS	A375_MHC_IP_R1	1	470.6844787597656	2	470.284734	938.554916	-0.24636	-0.00011586	0.089646	4.2159E-05	-0.15672	-7.3702E-05	470.2847393672857	56.423	1.3231	56.423	56.092	57.415	0					57	25	4	0	0	0	0.024574	1	20162	20162		79.596	3.8355	1	67134000			44087	7346	32258	32518	43029	43029					0.08318064168463479
RLSPVSPAL	9	Unmodified	_RLSPVSPAL_					0	0	0		ENSG00000168806|ENST00000305641|LCMT2;ENST00000567039.1_1_15:43620629-43622752:-|nuORF	ENSG00000168806|ENST00000305641|LCMT2	ENSG00000168806|ENST00000305641|LCMT2	MULTI-MSMS	A375_MHC_IP_R2	2	470.6843566894531	2	470.284734	938.554916	-0.68403	-0.00032169	0.053841	2.5321E-05	-0.63019	-0.00029637	470.2847130627327	55.461	1.3746	56.212	55.881	57.256	0.75075					64	26	4	0	0	0	0.024574	1	20895	20895		79.596	13.14	1	74117000			44088	7346	32258	32518	43030	43030					0.08318064168463479
RLSRSLQEH	9	Unmodified	_RLSRSLQEH_					0	0	0		ENSG00000189350|ENST00000379558|TOGARAM2;nc|ENSG00000189350|Q6ZUX3-2|TOGARAM2	ENSG00000189350|ENST00000379558|TOGARAM2	ENSG00000189350|ENST00000379558|TOGARAM2	MULTI-SECPEP	A375_MHC_IP_R1	1	376.60491943359375	3	375.875628	1124.60505	0.58633	0.00022039	1.5775	0.00059295	2.1639	0.00081334	375.876544659398	45.609	0.55463	45.609	45.183	45.738	0					12	10	2	0	0	0	0.71541	1	15915	15915		11.495	1.4208	1	714710			44089	8981	32259	32519	43031	43031					0.04773566826338538
RLSSVNAEV	9	Unmodified	_RLSSVNAEV_					0	0	0		nc|ENSG00000174837|Q14246-2|ADGRE1;nc|ENSG00000174837|Q14246-3|ADGRE1;ENSG00000174837|ENST00000312053|ADGRE1;nc|ENSG00000174837|Q14246-4|ADGRE1;nc|ENSG00000174837|Q14246-5|ADGRE1	nc|ENSG00000174837|Q14246-2|ADGRE1	nc|ENSG00000174837|Q14246-2|ADGRE1	MULTI-SECPEP	A375_MHC_IP_R1	1	488.1666564941406	2	487.766906	973.519259	-0.21841	-0.00010653	-0.20703	-0.00010098	-0.42544	-0.00020752	487.7666877863387	31.685	0.55945	31.685	31.465	32.024	0					26	10	3	0	0	0	0.27742	1	10162	10162		51.63	1.6968	1	8631100			44090	7905	32260	32520	43032	43032					0.03143981920800343
RLSSVNAEV	9	Unmodified	_RLSSVNAEV_					0	0	0		nc|ENSG00000174837|Q14246-2|ADGRE1;nc|ENSG00000174837|Q14246-3|ADGRE1;ENSG00000174837|ENST00000312053|ADGRE1;nc|ENSG00000174837|Q14246-4|ADGRE1;nc|ENSG00000174837|Q14246-5|ADGRE1	nc|ENSG00000174837|Q14246-2|ADGRE1	nc|ENSG00000174837|Q14246-2|ADGRE1	MULTI-SECPEP	A375_MHC_IP_R2	2	488.1667175292969	2	487.766906	973.519259	-0.6136	-0.00029929	-0.14284	-6.9671E-05	-0.75644	-0.00036896	487.76676247551654	30.975	1.0663	31.694	31.165	32.231	0.71857					39	20	3	0	0	0	0.10362	1	10912	10912		55.503	3.2344	1	8173500			44091	7905	32260	32520	43033	43033					0.03143981920800343
RLTDYISKV	9	Unmodified	_RLTDYISKV_					0	0	0		ENSG00000144746|ENST00000273258|ARL6IP5	ENSG00000144746|ENST00000273258|ARL6IP5	ENSG00000144746|ENST00000273258|ARL6IP5	MULTI-SECPEP	A375_MHC_IP_R2	2	547.6783447265625	2	547.813856	1093.61316	-1.0521	-0.00057633	-0.16742	-9.1716E-05	-1.2195	-0.00066805	547.8137038056408	57.9	0.55304	58.649	58.427	58.98	0.74894					35	10	5	0	0	0	0.23313	1	21903	21903		49.527	18.259	1	32673000			44092	5514	32261	32521	43034	43034					0.07009701023071102
RLTDYVAFL	9	Unmodified	_RLTDYVAFL_					0	0	0		ENSG00000198612|ENST00000354371|COPS8;nc|ENSG00000198612|Q99627-2|COPS8;ENST00000465362.1_1_2:238005439-238006382:+|nuORF	ENSG00000198612|ENST00000354371|COPS8	ENSG00000198612|ENST00000354371|COPS8	MULTI-MSMS	A375_MHC_IP_R2	2	549.703369140625	2	549.303124	1096.5917	-0.59143	-0.00032487	0.24272	0.00013333	-0.3487	-0.00019154	549.3031764842045	114.82	0.61354	115.51	115.27	115.88	0.68999					23	11	3	0	0	0	0.25114	1	43285	43285		43.772	7.7282	1	7817500			44093	9291	32262	32522	43035	43035					0.04726315994366814
RLTDYVAFL	9	Unmodified	_RLTDYVAFL_					0	0	0		ENSG00000198612|ENST00000354371|COPS8;nc|ENSG00000198612|Q99627-2|COPS8;ENST00000465362.1_1_2:238005439-238006382:+|nuORF	ENSG00000198612|ENST00000354371|COPS8	ENSG00000198612|ENST00000354371|COPS8	MULTI-MATCH	A375_MHC_IP_R1	1		2	549.303124	1096.5917	-0.18288	-0.00010046	0.019169	1.053E-05	-0.16371	-8.9926E-05	549.3028929311122	115.84	0.66034	115.84	115.58	116.24	0	0.16673	-7.7538E-05	NaN	43.772	30	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8002900			44094	9291	32262	32522							0.04726315994366814
RLTDYVAFL	9	Unmodified	_RLTDYVAFL_					0	0	0		ENSG00000198612|ENST00000354371|COPS8;nc|ENSG00000198612|Q99627-2|COPS8;ENST00000465362.1_1_2:238005439-238006382:+|nuORF	ENSG00000198612|ENST00000354371|COPS8	ENSG00000198612|ENST00000354371|COPS8	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	549.303124	1096.5917	-0.59143	-0.00032487	0.24272	0.00013333	-0.3487	-0.00019154	549.3031764842045	114.82	0.61354	115.51	115.27	115.88	0.68999	-0.16673	0.00016806	NaN	43.772	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7817500			44095	9291	32262	32522							0.04726315994366814
RLTEHGLKK	9	Unmodified	_RLTEHGLKK_					0	0	0			REV__ENSG00000174405|ENST00000442234|LIG4	REV__ENSG00000174405|ENST00000442234|LIG4	MSMS	A375_MHC_IP_R1	1	361.2569274902344	3	361.220735	1080.64038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.137	1	24.137	23.637	24.637	0								0	0	0	0.15486	1	6775	6775		8.9762	0	1		+		44096	21282	32263	32523	43036	43036					0.10328229354149698
RLTGPCAALR	10	Unmodified	_RLTGPCAALR_					0	0	0			REV__ENST00000468904.1_1_X:100184047-100184374:-|nuORF	REV__ENST00000468904.1_1_X:100184047-100184374:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	352.9634704589844	3	353.202687	1056.58623	-0.39112	-0.00013815	-3.957	-0.0013976	-4.3481	-0.0015358	353.2013187584015	36.712	0.25423	36.712	36.541	36.795	0					7	4	2	0	0	0	0.92227	1	12302	12302		7.9454	4.8731	1	584830	+		44097	25089	32264	32524	43037	43037					0.060203139308896425
RLTKERPIV	9	Unmodified	_RLTKERPIV_					0	0	0			REV__ENSG00000138095|ENST00000260665|LRPPRC	REV__ENSG00000138095|ENST00000260665|LRPPRC	MULTI-MSMS	A375_MHC_IP_R1	1	371.5979309082031	3	371.236385	1110.68733	0.21314	7.9127E-05	-2.245	-0.00083342	-2.0318	-0.00075429	371.56937139235293	25.595	0.30556	25.595	25.46	25.765	0					8	5	2	0	0	0	0.75274	1	7503	7503		2.2828	0.19677	1	5031600	+		44098	19063	32265	32525	43038	43038					0.13641088905251308
RLTNHQELW	9	Unmodified	_RLTNHQELW_					0	0	0		ENSG00000129933|ENST00000262815|MAU2;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENST00000262816.11_1_19:19456115-19463084:+|nuORF	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-SECPEP	A375_MHC_IP_R2	2	399.9435119628906	3	399.543878	1195.60981	-0.3765	-0.00015043	0.060097	2.4011E-05	-0.3164	-0.00012642	399.5438014145197	38.652	0.45807	39.427	39.25	39.708	0.77451					14	8	2	0	0	0	0.67539	1	14275	14275		20.581	0	1	4648300			44099	4214	32266	32526	43039	43039					0.019824509690806735
RLTPKLMEV	9	Oxidation (M)	_RLTPKLM(Oxidation (M))EV_		RLTPKLM(1)EV		RLTPKLM(79)EV	0	0	1		ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-SECPEP	A375_MHC_IP_R1	1	552.2177734375	2	551.818084	1101.62162	-0.33507	-0.0001849	-0.51281	-0.00028298	-0.84787	-0.00046787	551.8178837922851	35.63	0.66386	35.63	35.369	36.033	0					40	12	4	0	0	0	0.059142	1	11831	11831		79.427	37.587	1	63660000			44100	5699	32267	32527	43040	43040		304			0.07486931668040597
RLTPKLMEV	9	Oxidation (M)	_RLTPKLM(Oxidation (M))EV_		RLTPKLM(1)EV		RLTPKLM(76)EV	0	0	1		ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-SECPEP	A375_MHC_IP_R2	2	552.2173461914062	2	551.818084	1101.62162	-0.97319	-0.00053702	-0.10364	-5.7189E-05	-1.0768	-0.00059421	551.8180778814727	34.633	0.86113	35.397	35.068	35.929	0.76338					38	15	3	0	0	0	0.063333	1	12492	12492		75.571	39.444	1	69967000			44101	5699	32267	32527	43041	43041		304			0.07486931668040597
RLTPKLMEV	9	Unmodified	_RLTPKLMEV_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-SECPEP	A375_MHC_IP_R2	2	363.2826232910156	3	362.882843	1085.6267	-0.31067	-0.00011274	-0.17307	-6.2805E-05	-0.48374	-0.00017554	362.88271219041326	51.487	0.45601	52.239	52.017	52.473	0.75225					15	8	3	0	0	0	0.67323	1	19365	19365		23.801	4.4391	1	4300600			44102	5699	32267	32528	43042	43042					0.08731235530672166
RLTPLKPVKK	10	Unmodified	_RLTPLKPVKK_					0	0	0		ENST00000477591.1_1_3:52874512-52875735:-|nuORF;ENST00000464769.1_1_3:52874512-52877125:-|nuORF;ENSG00000213533|ENST00000355083|STIMATE	ENST00000477591.1_1_3:52874512-52875735:-|nuORF	ENST00000477591.1_1_3:52874512-52875735:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	393.9457092285156	3	393.936047	1178.78631	-0.24971	-9.8368E-05	0.28766	0.00011332	0.037953	1.4951E-05	393.93616992141904	67.093	0.30664	67.093	66.938	67.245	0					12	5	3	0	0	0	0.71946	1	24274	24274		3.5871	0.26742	1	1198800			44103	9570	32268	32529	43043	43043					0.20407111870144945
RLTPLKPVKK	10	Unmodified	_RLTPLKPVKK_					0	0	0		ENST00000477591.1_1_3:52874512-52875735:-|nuORF;ENST00000464769.1_1_3:52874512-52877125:-|nuORF;ENSG00000213533|ENST00000355083|STIMATE	ENST00000477591.1_1_3:52874512-52875735:-|nuORF	ENST00000477591.1_1_3:52874512-52875735:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	393.936047	1178.78631	-0.3686	-0.0001452	0.28438	0.00011203	-0.08422	-3.3177E-05	393.93619269791657	65.991	0.35793	66.729	66.526	66.884	0.73811	-0.18205	-1.5539E-06	NaN	3.5871	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1121600			44104	9570	32268	32529							0.20407111870144945
RLTQPARLT	9	Unmodified	_RLTQPARLT_					0	0	0		ENSG00000132182|ENST00000254508|NUP210;nc|ENSG00000132182|Q8TEM1-2|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-MSMS	A375_MHC_IP_R2	2	529.2200317382812	2	528.31964	1054.62473	-1.1147	-0.00058892	-0.53522	-0.00028277	-1.6499	-0.00087169	528.319355089325	28.638	0.20036	29.336	29.234	29.434	0.69872					6	3	2	0	0	0	0.6898	1	9944	9944		7.9102	0	1	15975000			44105	4379	32269	32530	43044	43044					0.09959942837076596
RLTQPARLT	9	Unmodified	_RLTQPARLT_					0	0	0		ENSG00000132182|ENST00000254508|NUP210;nc|ENSG00000132182|Q8TEM1-2|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	528.31964	1054.62473	-1.1147	-0.00058892	-0.53522	-0.00028277	-1.6499	-0.00087169	528.319355089325	28.638	0.20036	29.336	29.234	29.434	0.69872	-0.045929	-0.00014928	NaN	7.9102	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15975000			44106	4379	32269	32530							0.09959942837076596
RLTRTFLPF	9	Unmodified	_RLTRTFLPF_					0	0	0			REV__ENST00000491854.1_1_9:111812944-111819562:-|nuORF	REV__ENST00000491854.1_1_9:111812944-111819562:-|nuORF	MSMS	A375_MHC_IP_R1	1	384.2964782714844	3	384.229231	1149.66586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.772	1	34.772	34.272	35.272	0								0	0	0	0.15486	1	11493	11493		7.1017	0.47135	1		+		44107	25402	32270	32531	43045	43045					0.09701703876544343
RLTSLVPFV	9	Unmodified	_RLTSLVPFV_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A;ENST00000462527.2_1_10:120819077-120819266:-|nuORF	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	A375_MHC_IP_R1	1	516.7156982421875	2	516.316035	1030.61752	-0.34811	-0.00017973	0.28542	0.00014737	-0.062688	-3.2367E-05	516.3160327553287	109.94	1.7323	109.94	109.17	110.9	0					52	33	3	0	0	0	0.17338	1	40254	40254		39.95	9.3132	1	5902400			44108	2743	32271	32532	43046	43046					0.10343210236646883
RLTSLVPFV	9	Unmodified	_RLTSLVPFV_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A;ENST00000462527.2_1_10:120819077-120819266:-|nuORF	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	A375_MHC_IP_R2	2	516.7155151367188	2	516.316035	1030.61752	-0.71008	-0.00036662	0.48822	0.00025208	-0.22186	-0.00011455	516.3162018603955	108.81	1.9865	109.56	108.75	110.74	0.74684					52	38	3	0	0	0	0.070818	1	41041	41041		56.177	10.156	1	7027100			44109	2743	32271	32532	43047	43047					0.10343210236646883
RLTSWACLAGP	11	Unmodified	_RLTSWACLAGP_					0	0	0			REV__ENST00000486360.1_1_1:203045208-203045709:+|nuORF	REV__ENST00000486360.1_1_1:203045208-203045709:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	392.5818176269531	3	392.206098	1173.59646	0.14583	5.7196E-05	0.27093	0.00010626	0.41676	0.00016346	392.20619648212397	61.779	0.30664	61.779	61.636	61.943	0					8	5	2	0	0	0	0.72649	1	22336	22336		6.6235	0	1	993020	+		44110	25320	32272	32533	43048	43048					0.016608768654805317
RLVDLSGGWDA	11	Unmodified	_RLVDLSGGWDA_					0	0	0		ENST00000262518.8_1_16:30710550-30715400:+|nuORF;ENST00000411466.6_3_16:30709553-30715400:+|nuORF	ENST00000262518.8_1_16:30710550-30715400:+|nuORF	ENST00000262518.8_1_16:30710550-30715400:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	595.203857421875	2	594.80402	1187.59349	-0.49442	-0.00029408	-0.29758	-0.000177	-0.792	-0.00047108	595.3054337992801	83.87	0.4568	83.87	83.634	84.091	0					22	8	3	0	0	0	0.98346	1	30722	30722		24.957	16.212	1	5893200			44111	10306	32273	32534	43049	43049					0.007193250123464168
RLVEIQYEL	9	Unmodified	_RLVEIQYEL_					0	0	0		nc|ENSG00000139436|Q14161-11|GIT2;nc|ENSG00000139436|Q14161-7|GIT2;nc|ENSG00000139436|Q14161-9|GIT2;nc|ENSG00000139436|Q14161-6|GIT2;nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-8|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;ENSG00000139436|ENST00000355312|GIT2;ENST00000551455.5_1_12:110388962-110434038:-|nuORF;nc|ENSG00000139436|Q14161-2|GIT2	nc|ENSG00000139436|Q14161-11|GIT2	nc|ENSG00000139436|Q14161-11|GIT2	MULTI-SECPEP	A375_MHC_IP_R2	2	582.226806640625	2	581.826963	1161.63937	-0.28202	-0.00016409	-0.33516	-0.00019501	-0.61718	-0.00035909	581.8267354974645	83.97	0.6152	84.709	84.407	85.022	0.73962					19	11	2	0	0	0	0.13208	1	31933	31933		66.457	14.188	1	6406700			44112	5077	32274	32535	43050	43050					0.06501970194563
RLVESKVEL	9	Unmodified	_RLVESKVEL_					0	0	0		nc|ENSG00000079332|Q9NR31-2|SAR1A;ENSG00000079332|ENST00000373241|SAR1A;ENST00000452767.1_1_10:71914847-71917573:-|nuORF	nc|ENSG00000079332|Q9NR31-2|SAR1A	nc|ENSG00000079332|Q9NR31-2|SAR1A	MULTI-SECPEP	A375_MHC_IP_R1	1	537.2216186523438	2	536.821681	1071.62881	-0.3964	-0.00021279	-0.059531	-3.1958E-05	-0.45593	-0.00024475	536.8216636001255	39.059	0.40652	39.059	38.882	39.289	0					15	7	3	0	0	0	0.67323	1	13341	13341		24.991	1.2012	1	4104900			44113	1693	32275	32536	43051	43051					0.09585987540140195
RLVGVAERQV	10	Unmodified	_RLVGVAERQV_					0	0	0		ENST00000347343.6_1_20:54967102-54967198:-|nuORF	ENST00000347343.6_1_20:54967102-54967198:-|nuORF	ENST00000347343.6_1_20:54967102-54967198:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	376.2610778808594	3	376.22789	1125.66184	0.41567	0.00015639	-0.29885	-0.00011244	0.11682	4.3952E-05	376.22777156404345	20.325	0.5062	20.325	20.03	20.536	0					17	9	2	0	0	0	0.62155	1	5162	5162		12.175	0	1	2018100			44114	10912	32276	32537	43052	43052					0.10403614382835258
RLVKFRKRRRL	11	Unmodified	_RLVKFRKRRRL_					0	0	0			REV__ENSG00000204612|ENST00000376708|FOXB2	REV__ENSG00000204612|ENST00000376708|FOXB2	MSMS	A375_MHC_IP_R1	1	509.9595947265625	3	510.010944	1527.011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.198	1	22.198	21.698	22.698	0								0	0	0	0.1636	1	5932	5932		0	0	1		+		44115	22530	32277	32538	43053	43053					0.26857659463848904
RLVKFRKRRRL	11	Unmodified	_RLVKFRKRRRL_					0	0	0			REV__ENSG00000204612|ENST00000376708|FOXB2	REV__ENSG00000204612|ENST00000376708|FOXB2	MSMS	A375_MHC_IP_R1	1	764.5161743164062	2	764.512777	1527.011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.2	1	101.2	100.7	101.7	0								0	0	0	0.1636	1	37196	37196		0	0	1		+		44116	22530	32277	32538	43054	43054					0.26857659463848904
RLVPSVNGV	9	Unmodified	_RLVPSVNGV_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1;ENST00000555252.5_1_14:64855058-64907131:+|nuORF	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MULTI-SECPEP	A375_MHC_IP_R1	1	471.1821594238281	2	470.782359	939.550165	-0.22359	-0.00010526	0.00030074	1.4158E-07	-0.22329	-0.00010512	470.78237361317895	53.835	0.55814	53.835	53.555	54.113	0					18	10	2	0	0	0	0.47674	1	19191	19191		36.506	19.393	1	5616300			44117	2212	32278	32539	43055	43055					0.07797180025715988
RLVPSVNGV	9	Unmodified	_RLVPSVNGV_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1;ENST00000555252.5_1_14:64855058-64907131:+|nuORF	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MULTI-MSMS	A375_MHC_IP_R2	2	471.4905700683594	2	470.782359	939.550165	-1.1293	-0.00053165	0.12336	5.8076E-05	-1.0059	-0.00047357	470.78248800780125	52.935	0.50788	53.686	53.436	53.944	0.75105					22	9	3	0	0	0	0.066859	1	19982	19982		57.722	32.323	1	4629200			44118	2212	32278	32539	43056	43056					0.07797180025715988
RLVPTRNSW	9	Unmodified	_RLVPTRNSW_					0	0	0			REV__ENST00000382079.3_1_5:33989591-34020782:-|nuORF	REV__ENST00000382079.3_1_5:33989591-34020782:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	377.25531005859375	3	376.880602	1127.61998	0.33373	0.00012577	-0.27675	-0.0001043	0.056977	2.1474E-05	376.8804739901902	46.291	0.50241	46.291	46.043	46.545	0					13	9	2	0	0	0	0.69317	1	16182	16182		7.609	0.31972	1	2039000	+		44119	24242	32279	32540	43057	43057					0.06127058694301013
RLVQYVKGKTY	11	Unmodified	_RLVQYVKGKTY_					0	0	0		ENSG00000189221|ENST00000338702|MAOA	ENSG00000189221|ENST00000338702|MAOA	ENSG00000189221|ENST00000338702|MAOA	MSMS	A375_MHC_IP_R1	1	677.7952880859375	2	677.895712	1353.77687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.47	1	139.47	138.97	139.97	0								0	0	0	0.16307	1	53607	53607		2.7352	1.5419	1				44120	8971	32280	32541	43058	43058					0.11413298793991089
RLVRLTALA	9	Unmodified	_RLVRLTALA_					0	0	0			REV__ENSG00000127419|ENST00000264771|TMEM175	REV__ENSG00000127419|ENST00000264771|TMEM175	MULTI-MSMS	A375_MHC_IP_R1	1	1013.0615844726562	1	1012.66258	1011.6553	-0.1644	-0.00016648	-0.41358	-0.00041882	-0.57798	-0.0005853	1012.6618904901576	147.47	0.24997	147.47	147.38	147.63	0					54	24	3	0	0	0	0.77827	1	56342	56342		0	0	1	344740	+		44121	18419	32281	32542	43059	43059					0.1499372122209479
RLVRLTALA	9	Unmodified	_RLVRLTALA_					0	0	0			REV__ENSG00000127419|ENST00000264771|TMEM175	REV__ENSG00000127419|ENST00000264771|TMEM175	MULTI-SECPEP	A375_MHC_IP_R1	1	507.234375	2	506.834926	1011.6553	-0.73964	-0.00037488	-0.26085	-0.00013221	-1.0005	-0.00050708	506.8347361093357	147.49	0.29092	147.49	147.37	147.66	0					51	27	3	0	0	0	0.81896	1	56338	56338		0	0	1	284640	+		44122	18419	32281	32542	43060	43060					0.1499372122209479
RLVRLTALA	9	Unmodified	_RLVRLTALA_					0	0	0			REV__ENSG00000127419|ENST00000264771|TMEM175	REV__ENSG00000127419|ENST00000264771|TMEM175	MULTI-SECPEP	A375_MHC_IP_R2	2	507.23468017578125	2	506.834926	1011.6553	-0.54739	-0.00027744	-0.034574	-1.7523E-05	-0.58197	-0.00029496	506.83480016082785	147.49	0.30522	147.51	147.41	147.72	0.019913					47	25	3	0	0	0	0.81896	1	57325	57325		0	0	1	189360	+		44123	18419	32281	32542	43061	43061					0.1499372122209479
RLWASERLW	9	Unmodified	_RLWASERLW_					0	0	0		ENST00000399799.2_1_18:18691022-18691112:-|nuORF	ENST00000399799.2_1_18:18691022-18691112:-|nuORF	ENST00000399799.2_1_18:18691022-18691112:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	406.62420654296875	3	406.224368	1215.65128	-0.35545	-0.00014439	0.58421	0.00023732	0.22876	9.2926E-05	406.224508375622	76.039	0.70752	76.039	75.764	76.471	0					28	13	3	0	0	0	0.043891	1	27700	27700		66.683	31.071	1	5121300			44124	11547	32282	32543	43062	43062					0.05207631728421802
RLWASERLW	9	Unmodified	_RLWASERLW_					0	0	0		ENST00000399799.2_1_18:18691022-18691112:-|nuORF	ENST00000399799.2_1_18:18691022-18691112:-|nuORF	ENST00000399799.2_1_18:18691022-18691112:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	609.2326049804688	2	608.832914	1215.65128	-0.36676	-0.0002233	0.34713	0.00021134	-0.019635	-1.1954E-05	608.8330255099236	76.031	0.70752	76.031	75.764	76.471	0					28	13	4	0	0	0	0.55534	1	27695	27695		26.021	14.526	1	9243900			44125	11547	32282	32543	43063	43063					0.05207631728421802
RLWASERLW	9	Unmodified	_RLWASERLW_					0	0	0		ENST00000399799.2_1_18:18691022-18691112:-|nuORF	ENST00000399799.2_1_18:18691022-18691112:-|nuORF	ENST00000399799.2_1_18:18691022-18691112:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	406.6242370605469	3	406.224368	1215.65128	-0.032828	-1.3336E-05	-0.060182	-2.4447E-05	-0.09301	-3.7783E-05	406.2241930904233	75.121	0.70965	75.858	75.519	76.229	0.73752					28	13	3	0	0	0	0.043891	1	28510	28510		66.683	31.071	1	4830100			44126	11547	32282	32543	43064	43064					0.05207631728421802
RLWASERLW	9	Unmodified	_RLWASERLW_					0	0	0		ENST00000399799.2_1_18:18691022-18691112:-|nuORF	ENST00000399799.2_1_18:18691022-18691112:-|nuORF	ENST00000399799.2_1_18:18691022-18691112:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	609.2327880859375	2	608.832914	1215.65128	-0.4947	-0.00030119	0.19514	0.00011881	-0.29956	-0.00018238	608.8329363278368	75.108	0.55631	75.845	75.57	76.126	0.73752					27	10	4	0	0	0	0.57304	1	28499	28499		23.79	10.282	1	9550800			44127	11547	32282	32543	43065	43065					0.05207631728421802
RLWDFIDNR	9	Unmodified	_RLWDFIDNR_					0	0	0		MKRN2|p.E383D|1|0.85|ENSG00000075975|chr3:12582151-12582151|G/T|missense_variant	MKRN2|p.E383D|1|0.85|ENSG00000075975|chr3:12582151-12582151|G/T|missense_variant	MKRN2|p.E383D|1|0.85|ENSG00000075975|chr3:12582151-12582151|G/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	411.6053771972656	3	412.215761	1233.62546	0.32506	0.000134	-0.12787	-5.2709E-05	0.1972	8.1288E-05	412.2155632355471	51.631	0.40584	51.631	51.322	51.728	0					11	7	2	0	0	0	0.7911	1	18368	18368		7.609	3.2028	1	925120			44128	14385	32283	32544	43066	43066					0.017987374861377248
RLWDLQQL	8	Unmodified	_RLWDLQQL_					0	0	0		ENST00000396722.2_1_17:41158964-41164381:+|nuORF;ENST00000246911.6_1_17:41158964-41165399:+|nuORF;ENSG00000068079|ENST00000415816|IFI35;nc|ENSG00000068079|P80217-2|IFI35	ENST00000396722.2_1_17:41158964-41164381:+|nuORF	ENST00000396722.2_1_17:41158964-41164381:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	358.28485107421875	3	357.869703	1070.58728	-0.56786	-0.00020322	-0.061719	-2.2087E-05	-0.62958	-0.00022531	357.86957822434266	36.598	0.30417	37.369	37.157	37.461	0.7709					7	5	2	0	0	0	0.8957	1	13369	13369		22.736	1.1461	1	746590			44129	1452	32284	32545	43067	43067					0.05480851571473977
RLWEEAVKA	9	Unmodified	_RLWEEAVKA_					0	0	0		ENST00000423931.1_1_3:192873384-192874521:-|nuORF;ENSG00000136451|ENST00000581208|VEZF1	ENST00000423931.1_1_3:192873384-192874521:-|nuORF	ENST00000423931.1_1_3:192873384-192874521:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	550.708740234375	2	551.306198	1100.59784	-0.90702	-0.00050004	0.27372	0.0001509	-0.6333	-0.00034914	551.3064589403521	41.511	0.61106	42.286	42.047	42.659	0.77451					23	11	3	0	0	0	0.18338	1	15399	15399		34.932	2.6266	1	9865100			44130	11763	32285	32546	43068	43068					0.051568342258860866
RLWEEAVKA	9	Unmodified	_RLWEEAVKA_					0	0	0		ENST00000423931.1_1_3:192873384-192874521:-|nuORF;ENSG00000136451|ENST00000581208|VEZF1	ENST00000423931.1_1_3:192873384-192874521:-|nuORF	ENST00000423931.1_1_3:192873384-192874521:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	551.306198	1100.59784	-0.90702	-0.00050004	0.27372	0.0001509	-0.6333	-0.00034914	551.3064589403521	41.511	0.61106	42.286	42.047	42.659	0.77451	-0.025616	0.00020476	NaN	34.932	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9865100			44131	11763	32285	32546							0.051568342258860866
RLWGEPVNL	9	Unmodified	_RLWGEPVNL_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	A375_MHC_IP_R1	1	541.8193359375	2	542.300916	1082.58728	-0.78265	-0.00042443	-0.010391	-5.635E-06	-0.79304	-0.00043007	542.3008672544871	84.267	0.96564	84.267	83.887	84.852	0					33	18	2	0	0	0	0.038931	1	30867	30867		90.135	44.114	1	31170000			44132	3905	32286	32547	43069	43069					0.04928851571457926
RLWGEPVNL	9	Unmodified	_RLWGEPVNL_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	A375_MHC_IP_R2	2	543.02734375	2	542.300916	1082.58728	-0.79742	-0.00043244	-0.3073	-0.00016665	-1.1047	-0.00059909	542.3006702321433	83.386	0.96855	84.126	83.694	84.663	0.73962					31	18	2	0	0	0	0.13208	1	31744	31744		66.457	37.97	1	25290000			44133	3905	32286	32547	43070	43070					0.04928851571457926
RLWKAIHTA	9	Unmodified	_RLWKAIHTA_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	A375_MHC_IP_R1	1	366.2855224609375	3	365.885576	1094.6349	0.058428	2.1378E-05	0.5011	0.00018334	0.55952	0.00020472	365.8857235906211	28.062	0.75534	28.062	27.836	28.592	0					30	14	3	0	0	0	0.0098082	1	8606	8606		114.19	95.813	1	10883000			44134	8524	32287	32548	43071	43071					0.0913655056231164
RLWNETVEL	9	Unmodified	_RLWNETVEL_					0	0	0		nc|ENSG00000035499|Q8WUY9-2|DEPDC1B;ENSG00000035499|ENST00000265036|DEPDC1B	nc|ENSG00000035499|Q8WUY9-2|DEPDC1B;ENSG00000035499|ENST00000265036|DEPDC1B	ENSG00000035499|ENST00000265036|DEPDC1B	MULTI-MSMS	A375_MHC_IP_R1	1	580.708740234375	2	580.308938	1158.60332	-0.23269	-0.00013503	-0.29521	-0.00017131	-0.5279	-0.00030634	580.3087458253685	83.406	1.0164	83.406	83.024	84.041	0					30	19	3	0	0	0	0.18338	1	30513	30513		49.554	7.7147	1	4853700			44135	14461;1131	32288	32549	43072	43072					0.030365130177187893
RLWNETVEL	9	Unmodified	_RLWNETVEL_					0	0	0		nc|ENSG00000035499|Q8WUY9-2|DEPDC1B;ENSG00000035499|ENST00000265036|DEPDC1B	nc|ENSG00000035499|Q8WUY9-2|DEPDC1B;ENSG00000035499|ENST00000265036|DEPDC1B	ENSG00000035499|ENST00000265036|DEPDC1B	MULTI-MSMS	A375_MHC_IP_R2	2	580.92236328125	2	580.308938	1158.60332	-0.31346	-0.0001819	-0.35327	-0.00020501	-0.66673	-0.00038691	580.3087313608615	82.534	0.55699	83.277	82.94	83.497	0.74293					23	10	3	0	0	0	0.25114	1	31344	31344		43.772	0	1	4244400			44136	14461;1131	32288	32549	43073	43073					0.030365130177187893
RLWPKIQGL	9	Unmodified	_RLWPKIQGL_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	MULTI-SECPEP	A375_MHC_IP_R1	1	371.2975769042969	3	370.897593	1109.67095	0.42817	0.00015881	-0.13511	-5.0111E-05	0.29306	0.00010869	370.8975288664822	72.651	0.86147	72.651	72.22	73.082	0					47	16	4	0	0	0	0.47368	1	26388	26388		10.151	5.6217	1	11451000			44137	7273	32289	32550	43074	43074					0.12050007739162538
RLWPKIQGL	9	Unmodified	_RLWPKIQGL_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	MULTI-SECPEP	A375_MHC_IP_R2	2	371.29742431640625	3	370.897593	1109.67095	0.081416	3.0197E-05	-0.073333	-2.7199E-05	0.0080828	2.9979E-06	370.89751949773625	71.579	0.86078	72.313	71.959	72.82	0.73421					42	16	4	0	0	0	0.47368	1	27111	27111		14.405	9.8765	1	13715000			44138	7273	32289	32550	43075	43075					0.12050007739162538
RLWPKIQGL	9	Unmodified	_RLWPKIQGL_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	MULTI-SECPEP	A375_MHC_IP_R2	2	556.242431640625	2	555.842751	1109.67095	-1.0753	-0.0005977	-0.34755	-0.00019318	-1.4229	-0.00079088	555.8428480025781	71.625	1.012	72.36	71.959	72.971	0.73421					62	19	6	0	0	0	0.059859	1	27094	27094		71.922	46.523	1	24930000			44139	7273	32289	32550	43076	43076					0.12050007739162538
RLWPQGKW	8	Unmodified	_RLWPQGKW_					0	0	0		ENST00000398514.7_2_5:146778775-146780310:-|nuORF	ENST00000398514.7_2_5:146778775-146780310:-|nuORF	ENST00000398514.7_2_5:146778775-146780310:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	535.65771484375	2	535.798343	1069.58213	-1.0355	-0.00055484	-0.88433	-0.00047382	-1.9199	-0.0010287	535.7978037705667	34.637	0.35416	35.401	35.171	35.525	0.76338					11	6	2	0	0	0	0.972	1	12437	12437		7.9102	0	1	4171700			44140	11519	32290	32551	43077	43077					0.050125924995199966
RLWRHWWLRGW	11	Unmodified	_RLWRHWWLRGW_					0	0	0		ENST00000473038.5_1_1:46033610-46035625:+|nuORF	ENST00000473038.5_1_1:46033610-46035625:+|nuORF	ENST00000473038.5_1_1:46033610-46035625:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	550.6834106445312	3	551.300494	1650.87965	-0.73713	-0.00040638	-2.8002	-0.0015438	-3.5374	-0.0019502	551.6323602470768	90.405	0.60915	90.405	90.133	90.742	0					17	11	3	0	0	0	1.0014	1	33175	33175		0.50596	0.41111	1	759090			44141	12382	32291	32552	43078	43078					0.08024849095954778
RLWRHWWLRGW	11	Unmodified	_RLWRHWWLRGW_					0	0	0		ENST00000473038.5_1_1:46033610-46035625:+|nuORF	ENST00000473038.5_1_1:46033610-46035625:+|nuORF	ENST00000473038.5_1_1:46033610-46035625:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	551.3944702148438	3	551.300494	1650.87965	-0.55433	-0.0003056	-3.4921	-0.0019252	-4.0464	-0.0022308	551.2987924371693	100.02	0.4575	100.79	100.63	101.08	0.76278					14	8	2	0	0	0	1.0014	1	37953	37953		0.08335	0.08335	1	1324100			44142	12382	32291	32552	43079	43079					0.08024849095954778
RLWRQWGR	8	Unmodified	_RLWRQWGR_					0	0	0			REV__ENST00000397386.7_1_3:8543601-8590357:+|nuORF	REV__ENST00000397386.7_1_3:8543601-8590357:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	579.7252197265625	2	579.325591	1156.63663	-0.070214	-4.0677E-05	-0.99833	-0.00057836	-1.0685	-0.00061903	579.3249323532074	56.422	0.35397	56.422	56.194	56.548	0					10	6	2	0	0	0	0.7773	1	20250	20250		4.756	0.42677	1	1712000	+		44143	24354	32292	32553	43080	43080					0.06457604370939407
RLWRQWGR	8	Unmodified	_RLWRQWGR_					0	0	0			REV__ENST00000397386.7_1_3:8543601-8590357:+|nuORF	REV__ENST00000397386.7_1_3:8543601-8590357:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	579.325591	1156.63663	-0.070214	-4.0677E-05	-0.99833	-0.00057836	-1.0685	-0.00061903	579.3249323532074	56.422	0.35397	56.422	56.194	56.548	0	0.071434	0.00020309	NaN	4.756	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1712000	+		44144	24354	32292	32553							0.06457604370939407
RLWRQWGR	8	Unmodified	_RLWRQWGR_					0	0	0			REV__ENST00000397386.7_1_3:8543601-8590357:+|nuORF	REV__ENST00000397386.7_1_3:8543601-8590357:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	579.325591	1156.63663	-0.32556	-0.0001886	-1.3262	-0.00076832	-1.6518	-0.00095692	579.3249170835586	55.529	0.30411	56.279	56.084	56.388	0.75075	-0.071434	-0.00017683	NaN	4.756	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1906500	+		44145	24354	32292	32553							0.06457604370939407
RLWTEIPTAI	10	Unmodified	_RLWTEIPTAI_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	A375_MHC_IP_R1	1	600.7420043945312	2	600.342781	1198.67101	-0.32677	-0.00019617	0.052848	3.1727E-05	-0.27392	-0.00016445	600.3425140645244	102.35	0.45424	102.35	102.1	102.56	0					15	8	3	0	0	0	0.38709	2	37621	37554;37621		34.932	0.53034	1	1705400			44146	2058	32293	32554	43081;43082	43082					0.07961962948502332
RLWTMFSRVVV	11	Unmodified	_RLWTMFSRVVV_					0	0	0			REV__ENST00000514280.1_1_5:79646842-79647379:-|nuORF	REV__ENST00000514280.1_1_5:79646842-79647379:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	697.8004760742188	2	697.392282	1392.77001	-0.69308	-0.00048335	0.11632	8.1122E-05	-0.57675	-0.00040222	697.3918835047261	131	0.20273	131.21	131.11	131.31	0.2142					5	3	2	0	0	0	0.73459	1	51515	51515		4.5289	0.93237	1	1188700	+		44147	20174	32294	32555	43083	43083					0.08933662641743467
RLWWERRDRRF	11	Unmodified	_RLWWERRDRRF_					0	0	0		ENST00000530167.1_1_11:118964940-118965138:-|nuORF	ENST00000530167.1_1_11:118964940-118965138:-|nuORF	ENST00000530167.1_1_11:118964940-118965138:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	559.1732177734375	3	559.306196	1674.89676	-0.55453	-0.00031015	-0.67119	-0.0003754	-1.2257	-0.00068555	559.3063020954556	64.686	1.2683	64.686	63.887	65.156	0					35	24	3	0	0	0	1.0015	1	23327	23327		0	0	1	4640700			44148	13146	32295	32556	43084	43084					0.08630724911085963
RLWWHHWICWL	11	Unmodified	_RLWWHHWICWL_					0	0	0		SGMS1|p.Y307H|1|0.35|ENSG00000198964|chr10:50308125-50308125|A/G|missense_variant	SGMS1|p.Y307H|1|0.35|ENSG00000198964|chr10:50308125-50308125|A/G|missense_variant	SGMS1|p.Y307H|1|0.35|ENSG00000198964|chr10:50308125-50308125|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6455688476562	3	545.943319	1634.80813	-0.53809	-0.00029377	-0.1349	-7.3648E-05	-0.67299	-0.00036741	546.2772575008717	93.814	0.656	93.814	93.635	94.291	0					15	12	2	0	0	0	1.0014	1	34568	34568		0.50596	0.41111	1	1423100			44149	29147	32296	32557	43085	43085					0.016115933471155586
RLWWHHWICWL	11	Unmodified	_RLWWHHWICWL_					0	0	0		SGMS1|p.Y307H|1|0.35|ENSG00000198964|chr10:50308125-50308125|A/G|missense_variant	SGMS1|p.Y307H|1|0.35|ENSG00000198964|chr10:50308125-50308125|A/G|missense_variant	SGMS1|p.Y307H|1|0.35|ENSG00000198964|chr10:50308125-50308125|A/G|missense_variant	MSMS	A375_MHC_IP_R2	2	818.3356323242188	2	818.41134	1634.80813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.105	1	91.839	91.339	92.339	0.7345								0	0	0	0.1636	1	34666	34666		0	0	1				44150	29147	32296	32557	43086	43086					0.016115933471155586
RLWWYYWICWL	11	Unmodified	_RLWWYYWICWL_					0	0	0		SGMS1|p.H308Y|1|0.16|ENSG00000198964|chr10:50308122-50308122|G/A|missense_variant	SGMS1|p.H308Y|1|0.16|ENSG00000198964|chr10:50308122-50308122|G/A|missense_variant	SGMS1|p.H308Y|1|0.16|ENSG00000198964|chr10:50308122-50308122|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	844.464599609375	2	844.415757	1686.81696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.41	1	120.94	120.44	121.44	0.5321								0	0	0	0.16353	1	45947	45947		0.35063	0	1				44151	29146	32297	32558	43087	43087					0.0010252219292397058
RLYDGLFKV	9	Unmodified	_RLYDGLFKV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-SECPEP	A375_MHC_IP_R1	1	556.21875	2	555.818941	1109.62333	-0.64124	-0.00035641	0.055035	3.0589E-05	-0.5862	-0.00032582	555.8188913717416	76.715	0.96519	76.715	76.421	77.386	0					47	18	4	0	0	0	0.24655	1	27925	27925		63.227	36.344	1	26677000			44152	7247	32298	32559	43088	43088					0.0729030874831551
RLYDGLFKV	9	Unmodified	_RLYDGLFKV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-SECPEP	A375_MHC_IP_R2	2	556.21826171875	2	555.818941	1109.62333	-0.76872	-0.00042727	-0.13917	-7.7355E-05	-0.90789	-0.00050462	555.8188225410655	75.77	0.76216	76.51	76.181	76.943	0.74052					40	14	4	0	0	0	0.10535	1	28726	28726		82.529	34.781	1	30049000			44153	7247	32298	32559	43089	43089					0.0729030874831551
RLYDTHITV	9	Unmodified	_RLYDTHITV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-SECPEP	A375_MHC_IP_R2	2	559.6888427734375	2	559.303655	1116.59276	-0.68002	-0.00038034	0.22197	0.00012415	-0.45805	-0.00025619	559.3036958658835	45.701	0.55374	46.466	46.15	46.704	0.76519					22	10	3	0	0	0	0.656	1	17096	17096		32.786	17.947	1	15095000			44154	2365	32299	32560	43090	43090					0.03912530363277256
RLYFKRKRLYF	11	Unmodified	_RLYFKRKRLYF_					0	0	0			REV__ENST00000342992.10_3_2:179540701-179542581:-|nuORF	REV__ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	531.3875122070312	3	530.652422	1588.93544	-0.44431	-0.00023577	-0.20238	-0.0001074	-0.64669	-0.00034317	530.986319089914	137.13	1.0781	137.24	136.71	137.79	0.11134					45	20	4	0	0	0	0.73925	2	53859	53859;53990		0.08335	0.08335	1	3255700	+		44155	23747	32300	32561	43091;43092	43091					0.16452637492943722
RLYGNPNTL	9	Unmodified	_RLYGNPNTL_					0	0	0		ENSG00000124659|ENST00000372876|TBCC	ENSG00000124659|ENST00000372876|TBCC	ENSG00000124659|ENST00000372876|TBCC	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6824951171875	2	524.282723	1046.55089	-0.54939	-0.00028804	0.19101	0.00010015	-0.35838	-0.00018789	524.2828986600956	40.177	0.50974	40.177	39.896	40.406	0					13	9	2	0	0	0	0.059859	1	13797	13797		81.89	38.032	1	4376000			44156	3920	32301	32562	43093	43093					0.02947974674748366
RLYGNPNTL	9	Unmodified	_RLYGNPNTL_					0	0	0		ENSG00000124659|ENST00000372876|TBCC	ENSG00000124659|ENST00000372876|TBCC	ENSG00000124659|ENST00000372876|TBCC	MULTI-SECPEP	A375_MHC_IP_R2	2	524.6823120117188	2	524.282723	1046.55089	-0.61417	-0.000322	-0.31302	-0.00016411	-0.92719	-0.00048611	524.2825534772929	39.292	0.35545	40.067	39.914	40.269	0.77451					17	6	3	0	0	0	0.04395	1	14521	14521		92.491	44.743	1	2586300			44157	3920	32301	32562	43094	43094					0.02947974674748366
RLYHITDQV	9	Unmodified	_RLYHITDQV_					0	0	0		nc|ENSG00000170340|Q9NY97-2|B3GNT2;ENSG00000170340|ENST00000301998|B3GNT2	nc|ENSG00000170340|Q9NY97-2|B3GNT2	nc|ENSG00000170340|Q9NY97-2|B3GNT2	MULTI-SECPEP	A375_MHC_IP_R1	1	382.6087951660156	3	382.208495	1143.60366	0.6275	0.00023984	-0.078408	-2.9968E-05	0.54909	0.00020987	382.20854425039477	39.162	0.45804	39.162	38.882	39.34	0					12	8	2	0	0	0	0.31606	1	13355	13355		30.703	19.186	1	3735600			44158	7496	32302	32563	43095	43095					0.03759932737534655
RLYHITDQV	9	Unmodified	_RLYHITDQV_					0	0	0		nc|ENSG00000170340|Q9NY97-2|B3GNT2;ENSG00000170340|ENST00000301998|B3GNT2	nc|ENSG00000170340|Q9NY97-2|B3GNT2	nc|ENSG00000170340|Q9NY97-2|B3GNT2	MULTI-MSMS	A375_MHC_IP_R2	2	381.9154052734375	3	382.208495	1143.60366	-0.3957	-0.00015124	0.3225	0.00012326	-0.073203	-2.7979E-05	382.5429165414406	38.222	0.45909	38.996	38.791	39.25	0.77451					12	8	2	0	0	0	0.13728	1	14035	14035		43.982	30.367	1	2975600			44159	7496	32302	32563	43096	43096					0.03759932737534655
RLYKIYRE	8	Unmodified	_RLYKIYRE_					0	0	0		ENSG00000204427|ENST00000395952|ABHD16A	ENSG00000204427|ENST00000395952|ABHD16A	ENSG00000204427|ENST00000395952|ABHD16A	MULTI-SECPEP	A375_MHC_IP_R2	2	380.6025695800781	3	380.888986	1139.64513	-0.10745	-4.0927E-05	0.4048	0.00015419	0.29735	0.00011326	381.2234910409246	50.835	0.35337	51.589	51.361	51.715	0.75406					8	6	2	0	0	0	0.972	1	19133	19133		8.1555	4.8742	1	377960			44160	9443	32303	32564	43097	43097					0.08089113496907885
RLYKKGQDL	9	Unmodified	_RLYKKGQDL_					0	0	0			REV__CABIN1|p.P1633L|1|0.36|ENSG00000099991|chr22:24164551-24164551|C/T|missense_variant	REV__CABIN1|p.P1633L|1|0.36|ENSG00000099991|chr22:24164551-24164551|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	373.972900390625	3	374.220624	1119.64004	-0.026081	-9.7599E-06	-0.2698	-0.00010097	-0.29588	-0.00011073	374.2205643421262	28.356	0.35524	29.035	28.858	29.214	0.67857					11	6	2	0	0	0	0.61452	1	9829	9829		20.415	6.7997	1	3049600	+		44161	15547	32304	32565	43098	43098					0.08500809634278994
RLYLHSSLH	9	Unmodified	_RLYLHSSLH_					0	0	0			REV__nc|ENSG00000104133|Q96JI7-2|SPG11	REV__nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-SECPEP	A375_MHC_IP_R2	2	376.6049499511719	3	375.876969	1124.60908	0.18464	6.9403E-05	-0.6966	-0.00026184	-0.51196	-0.00019243	375.8765354373617	44.531	0.40538	45.3	45.138	45.543	0.7691					11	7	2	0	0	0	0.71541	1	16676	16676		11.495	6.1978	1	620190	+		44162	17305	32305	32566	43099	43099					0.0517565632003425
RLYMWTTPT	9	Unmodified	_RLYMWTTPT_					0	0	0			REV__ENST00000561666.5_1_16:30064138-30064237:-|nuORF	REV__ENST00000561666.5_1_16:30064138-30064237:-|nuORF	MSMS	A375_MHC_IP_R1	1	390.14312744140625	3	390.198831	1167.57467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.43	1	142.43	141.93	142.93	0								0	0	0	0.15486	1	54651	54651		2.4985	0	1		+		44163	26178	32306	32567	43100	43100					-0.0024192788309846947
RLYNKHRRIRR	11	Unmodified	_RLYNKHRRIRR_					0	0	0			REV__ENST00000492830.5_1_16:56419897-56437006:-|nuORF	REV__ENST00000492830.5_1_16:56419897-56437006:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	523.7213134765625	3	523.322069	1566.94438	-0.3645	-0.00019075	-0.075995	-3.977E-05	-0.4405	-0.00023052	523.3220170630718	143.1	0.70895	143.13	142.74	143.45	0.030731					17	13	2	0	0	0	0.73934	1	55953	55953		0	0	1	1319800	+		44164	20124	32307	32568	43101	43101					0.18358423901941023
RLYNKHRRIRR	11	Unmodified	_RLYNKHRRIRR_					0	0	0			REV__ENST00000492830.5_1_16:56419897-56437006:-|nuORF	REV__ENST00000492830.5_1_16:56419897-56437006:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	522.6541137695312	3	523.322069	1566.94438	-0.3645	-0.00019075	-0.075995	-3.977E-05	-0.4405	-0.00023052	523.3220170630718	143.1	0.70895	143.13	142.74	143.45	0.030731					17	13	2	0	0	0	1.0015	1	55830	55830		0.094841	0	1	1319800	+		44165	20124	32307	32568	43102	43102					0.18358423901941023
RLYPEGLAQL	10	Unmodified	_RLYPEGLAQL_					0	0	0		ENST00000563305.1_1_16:67472744-67473248:-|nuORF;ENSG00000159720|ENST00000290949|ATP6V0D1	ENST00000563305.1_1_16:67472744-67473248:-|nuORF	ENST00000563305.1_1_16:67472744-67473248:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	580.727783203125	2	580.327131	1158.63971	-0.075545	-4.3841E-05	-0.078651	-4.5644E-05	-0.1542	-8.9484E-05	580.3269719953587	82.088	0.66061	82.088	81.758	82.418	0					31	12	4	0	0	0	0.13157	1	29959	29959		80.676	28.408	1	12185000			44166	6386	32308	32569	43103	43103					0.0667338991440829
RLYPEGLAQL	10	Unmodified	_RLYPEGLAQL_					0	0	0		ENST00000563305.1_1_16:67472744-67473248:-|nuORF;ENSG00000159720|ENST00000290949|ATP6V0D1	ENST00000563305.1_1_16:67472744-67473248:-|nuORF	ENST00000563305.1_1_16:67472744-67473248:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	580.7266845703125	2	580.327131	1158.63971	-0.39679	-0.00023027	-0.21388	-0.00012412	-0.61067	-0.00035439	580.3270829506366	81.214	0.65935	81.958	81.572	82.231	0.74474					35	12	4	0	0	0	0.021392	1	30821	30821		84.522	40.664	1	11425000			44167	6386	32308	32569	43104	43104					0.0667338991440829
RLYPGQRHL	9	Unmodified	_RLYPGQRHL_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-MSMS	A375_MHC_IP_R1	1	380.95257568359375	3	380.552597	1138.63596	0.34012	0.00012943	-0.49873	-0.00018979	-0.15861	-6.0361E-05	380.5524554601146	23.15	0.30348	23.15	22.974	23.278	0					8	5	2	0	0	0	0.0092511	1	6318	6318		103.42	63.47	1	7604600			44168	2535	32309	32570	43105	43105					0.07218764931258193
RLYPGQRHL	9	Unmodified	_RLYPGQRHL_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-MSMS	A375_MHC_IP_R2	2	380.9457092285156	3	380.552597	1138.63596	-0.31826	-0.00012111	-0.2403	-9.1449E-05	-0.55856	-0.00021256	380.5525060165748	20.211	0.6604	20.821	20.449	21.109	0.61029					28	12	3	0	0	0	0.027818	2	6270	6227;6270		76.825	47.596	1	2684300			44169	2535	32309	32570	43106;43107	43107					0.07218764931258193
RLYPVSARHW	10	Unmodified	_RLYPVSARHW_					0	0	0		ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	MULTI-MSMS	A375_MHC_IP_R1	1	429.3033447265625	3	428.903518	1283.68872	-0.0077158	-3.3093E-06	-0.37178	-0.00015946	-0.37949	-0.00016277	428.90337887815065	35.874	0.61079	35.874	35.625	36.236	0					30	11	3	0	0	0	0.042263	1	11974	11974		78.116	57.244	1	4065800			44170	1514	32310	32571	43108	43108					0.05822722994025753
RLYPVSARHW	10	Unmodified	_RLYPVSARHW_					0	0	0		ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	MULTI-MSMS	A375_MHC_IP_R2	2	429.30316162109375	3	428.903518	1283.68872	-0.41086	-0.00017622	-0.15428	-6.617E-05	-0.56514	-0.00024239	428.9034733577147	34.889	0.70758	35.652	35.273	35.98	0.76338					30	13	3	0	0	0	0.20671	1	12596	12596		48.561	41.524	1	5436400			44171	1514	32310	32571	43109	43109					0.05822722994025753
RLYPWGVVEV	10	Unmodified	_RLYPWGVVEV_					0	0	0		ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000481500.1_1_2:242277175-242285749:+|nuORF	ENSG00000168385|ENST00000391971|SEPTIN2	ENSG00000168385|ENST00000391971|SEPTIN2	MULTI-MSMS	A375_MHC_IP_R2	2	609.7369995117188	2	609.337498	1216.66044	-0.40144	-0.00024461	-0.59423	-0.00036209	-0.99567	-0.0006067	609.33691544554	104.54	0.40955	105.3	104.95	105.36	0.76308					16	7	3	0	0	0	0.47255	1	39541	39541		29.841	18.346	1	1433100			44172	7293	32311	32572	43110	43110					0.06077980294094232
RLYPWGVVEV	10	Unmodified	_RLYPWGVVEV_					0	0	0		ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000481500.1_1_2:242277175-242285749:+|nuORF	ENSG00000168385|ENST00000391971|SEPTIN2	ENSG00000168385|ENST00000391971|SEPTIN2	MULTI-MATCH	A375_MHC_IP_R1	1		2	609.337498	1216.66044	-0.22465	-0.00013689	-1.0228	-0.00062322	-1.2474	-0.00076011	609.3364171526762	105.38	0.50706	105.38	105.2	105.7	0	0.036915	-0.00043634	NaN	29.841	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1754300			44173	7293	32311	32572							0.06077980294094232
RLYQGINQL	9	Unmodified	_RLYQGINQL_					0	0	0		ENSG00000095002|ENST00000233146|MSH2;nc|ENSG00000095002|P43246-2|MSH2	ENSG00000095002|ENST00000233146|MSH2	ENSG00000095002|ENST00000233146|MSH2	MULTI-MSMS	A375_MHC_IP_R1	1	553.2294311523438	2	552.811648	1103.60874	-0.46349	-0.00025623	0.019099	1.0558E-05	-0.4444	-0.00024567	552.8116778466185	55.962	0.66009	55.962	55.687	56.347	0					32	12	3	0	0	0	0.010037	1	20087	20087		96.285	31.05	1	26598000			44174	2032	32312	32573	43111	43111					0.061082366001983246
RLYQGINQL	9	Unmodified	_RLYQGINQL_					0	0	0		ENSG00000095002|ENST00000233146|MSH2;nc|ENSG00000095002|P43246-2|MSH2	ENSG00000095002|ENST00000233146|MSH2	ENSG00000095002|ENST00000233146|MSH2	MULTI-SECPEP	A375_MHC_IP_R2	2	553.2109985351562	2	552.811648	1103.60874	-0.90697	-0.00050138	0.34643	0.00019151	-0.56054	-0.00030987	552.8118230524598	55.059	0.76231	55.809	55.575	56.337	0.75075					41	14	4	0	0	0	0.037185	1	20772	20772		74.929	9.694	1	21375000			44175	2032	32312	32573	43112	43112					0.061082366001983246
RLYTEPLLV	9	Unmodified	_RLYTEPLLV_					0	0	0		nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT	MULTI-MSMS	A375_MHC_IP_R2	2	552.2447509765625	2	552.326599	1102.63865	-0.64549	-0.00035652	0.0048654	2.6873E-06	-0.64063	-0.00035384	552.3265284234416	84.995	1.1199	85.731	85.372	86.492	0.73602					63	21	5	0	0	0	0.02559	1	32305	32305		78.728	0.74371	1	46192000			44176	3874;14576	32313	32574	43113	43113					0.09143175545523263
RLYWFPLKV	9	Unmodified	_RLYWFPLKV_					0	0	0		nc|ENSG00000223802|P27544-2|CERS1;ENSG00000223802|ENST00000623882|CERS1	nc|ENSG00000223802|P27544-2|CERS1	nc|ENSG00000223802|P27544-2|CERS1	MULTI-SECPEP	A375_MHC_IP_R2	2	611.092529296875	2	611.360776	1220.707	-0.49764	-0.00030424	-0.16027	-9.798E-05	-0.65791	-0.00040222	611.8623390973844	102.92	0.30658	103.69	103.53	103.84	0.76428					9	5	2	0	0	0	0.75164	1	38990	38990		9.3831	5.7866	1	1156800			44177	9689	32314	32575	43114	43114					0.10547464916021454
RMDNIYFEY	9	Oxidation (M)	_RM(Oxidation (M))DNIYFEY_		RM(1)DNIYFEY		RM(77)DNIYFEY	0	0	1		ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	MULTI-MSMS	A375_MHC_IP_R1	1	634.1766967773438	2	633.776613	1265.53867	-0.3676	-0.00023298	0.057628	3.6523E-05	-0.30997	-0.00019645	633.7767813149267	70.057	0.70998	70.057	69.631	70.341	0					35	13	4	0	0	0	0.027818	1	25399	25399		76.825	56.371	1	7385400			44178	3141	32315	32576	43115	43115		148			-0.08347429850573462
RMDNIYFEY	9	Oxidation (M)	_RM(Oxidation (M))DNIYFEY_		RM(1)DNIYFEY		RM(48)DNIYFEY	0	0	1		ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	MULTI-MSMS	A375_MHC_IP_R2	2	634.1758422851562	2	633.776613	1265.53867	-0.70192	-0.00044486	-0.56491	-0.00035803	-1.2668	-0.00080288	633.7766082950612	69.417	0.71009	70.151	69.778	70.488	0.73421					42	13	5	0	0	0	0.11715	1	26272	26272		47.594	24.858	1	6524600			44179	3141	32315	32576	43116	43116		148			-0.08347429850573462
RMDNIYFEY	9	Unmodified	_RMDNIYFEY_					0	0	0		ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	MULTI-SECPEP	A375_MHC_IP_R1	1	626.1788330078125	2	625.779156	1249.54376	-0.39817	-0.00024917	0.20985	0.00013132	-0.18832	-0.00011785	625.7791713021172	82.484	0.50775	82.484	82.265	82.772	0					25	9	3	0	0	0	0.33896	1	30151	30151		47.594	11.467	1	6704200			44180	3141	32315	32577	43117	43117					-0.07103125987964631
RMDNIYFEY	9	Unmodified	_RMDNIYFEY_					0	0	0		ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	MULTI-SECPEP	A375_MHC_IP_R2	2	626.1566772460938	2	625.779156	1249.54376	-0.85813	-0.000537	-0.24986	-0.00015636	-1.108	-0.00069336	625.7790412640538	81.867	0.60957	82.61	82.229	82.839	0.74293					28	11	3	0	0	0	0.53098	1	31045	31045		33.445	10.709	1	7380500			44181	3141	32315	32577	43118	43118					-0.07103125987964631
RMDTVIWFV	9	Unmodified	_RMDTVIWFV_					0	0	0		ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	MULTI-SECPEP	A375_MHC_IP_R1	1	584.2046508789062	2	583.804977	1165.5954	-0.059887	-3.4962E-05	-0.26381	-0.00015402	-0.3237	-0.00018898	583.804836640929	126.03	0.40211	126.03	125.9	126.3	0					11	7	2	0	0	0	0.35628	1	48100	48100		51.63	23.143	1	45386000			44182	6160	32316	32578	43119	43119					0.019226624965540395
RMDTVIWFV	9	Unmodified	_RMDTVIWFV_					0	0	0		ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	MULTI-SECPEP	A375_MHC_IP_R2	2	584.2041625976562	2	583.804977	1165.5954	-0.39382	-0.00022992	-0.78067	-0.00045576	-1.1745	-0.00068568	583.8044763742945	125.55	0.40282	125.85	125.72	126.12	0.2951					15	7	3	0	0	0	0.26374	1	49009	49009		51.63	21.405	1	50637000			44183	6160	32316	32578	43120	43120					0.019226624965540395
RMDYPVFTV	9	Unmodified	_RMDYPVFTV_					0	0	0		nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3;SEL1L3|p.S291L|1|0.5|ENSG00000091490|chr4:25833558-25833558|G/A|missense_variant	nc|ENSG00000091490|Q68CR1-2|SEL1L3	nc|ENSG00000091490|Q68CR1-2|SEL1L3	MULTI-MSMS	A375_MHC_IP_R1	1	564.244873046875	2	564.281334	1126.54812	-0.53921	-0.00030426	-0.029199	-1.6477E-05	-0.56841	-0.00032074	564.2813426971522	91.376	0.91048	91.376	90.946	91.857	0					37	17	3	0	0	0	0.12748	1	33567	33567		45.74	16.658	1	11076000			44184	1980	32317	32579	43121	43121					-0.01009616774422284
RMDYPVFTV	9	Unmodified	_RMDYPVFTV_					0	0	0		nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3;SEL1L3|p.S291L|1|0.5|ENSG00000091490|chr4:25833558-25833558|G/A|missense_variant	nc|ENSG00000091490|Q68CR1-2|SEL1L3	nc|ENSG00000091490|Q68CR1-2|SEL1L3	MULTI-MSMS	A375_MHC_IP_R2	2	564.7586059570312	2	564.281334	1126.54812	-0.38071	-0.00021483	0.30861	0.00017414	-0.072097	-4.0683E-05	564.281202252655	90.491	0.96464	91.225	90.702	91.666	0.7345					50	18	4	0	0	0	0.084766	1	34459	34459		53.404	24.322	1	11464000			44185	1980	32317	32579	43122	43122					-0.01009616774422284
RMEIKYVSQL	10	Unmodified	_RMEIKYVSQL_					0	0	0		ART3|p.P53S|1|0.35|ENSG00000156219|chr4:76081911-76081911|C/T|missense_variant	ART3|p.P53S|1|0.35|ENSG00000156219|chr4:76081911-76081911|C/T|missense_variant	ART3|p.P53S|1|0.35|ENSG00000156219|chr4:76081911-76081911|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	423.634765625	3	422.900674	1265.68019	-0.48795	-0.00020635	-0.32908	-0.00013917	-0.81703	-0.00034552	423.23504507325634	22.867	0.45954	23.497	23.215	23.675	0.63015					23	8	5	0	0	0	0.71076	1	7278	7278		7.4771	0.37534	1	3039000			44186	185	32318	32580	43123	43123					0.05797988242534302
RMELTVVFMP	10	Unmodified	_RMELTVVFMP_					0	0	0		ENST00000424450.1_1_10:135109371-135109476:-|nuORF	ENST00000424450.1_1_10:135109371-135109476:-|nuORF	ENST00000424450.1_1_10:135109371-135109476:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	612.2192993164062	2	611.81977	1221.62499	-0.18348	-0.00011226	-0.9029	-0.00055241	-1.0864	-0.00066467	611.8192284918217	35.923	0.4583	35.923	35.625	36.084	0					20	8	3	0	0	0	0.77998	1	11980	11980		34.402	0	1	5088700			44187	11774	32319	32581	43124	43124					0.02303858450432017
RMFAPTKTW	9	Unmodified	_RMFAPTKTW_					0	0	0		ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	569.7197265625	2	569.297319	1136.58008	-0.41492	-0.00023621	-0.63661	-0.00036242	-1.0515	-0.00059863	569.2968976703904	46.57	0.86577	46.57	46.345	47.211	0					31	16	3	0	0	0	0.063333	1	16347	16347		84.522	84.522	1	13924000			44188	7879	32320	32582	43125	43125					0.01725795699394439
RMFAPTKTW	9	Unmodified	_RMFAPTKTW_					0	0	0		ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	379.9485168457031	3	379.867305	1136.58008	0.036875	1.4008E-05	0.072217	2.7433E-05	0.10909	4.1441E-05	379.8672354345844	45.638	0.35083	46.403	46.201	46.552	0.76518					11	6	2	0	0	0	0.5212	1	17067	17067		24.882	17.273	1	1421400			44189	7879	32320	32582	43126	43126					0.01725795699394439
RMFAPTKTW	9	Unmodified	_RMFAPTKTW_					0	0	0		ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	569.6973876953125	2	569.297319	1136.58008	-0.33945	-0.00019325	-0.16257	-9.2552E-05	-0.50202	-0.0002858	569.297276195748	45.647	0.45255	46.412	46.15	46.603	0.76519					21	8	3	0	0	0	0.044425	1	17055	17055		96.936	96.936	1	15694000			44190	7879	32320	32582	43127	43127					0.01725795699394439
RMFAPTKTW	9	Oxidation (M)	_RM(Oxidation (M))FAPTKTW_		RM(1)FAPTKTW		RM(52)FAPTKTW	0	0	1		ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	ENST00000566039.5_1_15:66793707-66797161:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	577.694580078125	2	577.294776	1152.575	-0.62747	-0.00036224	-0.019469	-1.124E-05	-0.64694	-0.00037347	577.2947620627631	33.668	0.65875	34.42	33.992	34.651	0.75225					30	12	3	0	0	0	0.11711	1	11985	11985		51.63	13.656	1	6832300			44191	7879	32320	32583	43128	43128		393			0.00481491836785608
RMFDGKFVV	9	Unmodified	_RMFDGKFVV_					0	0	0		nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	MULTI-SECPEP	A375_MHC_IP_R1	1	367.2637634277344	3	366.863672	1097.56919	0.2119	7.7739E-05	-0.18225	-6.6861E-05	0.02965	1.0877E-05	366.8636916918527	64.477	0.5586	64.477	64.242	64.8	0					23	10	3	0	0	0	0.74597	1	23324	23324		16.566	12.621	1	3401100			44192	5957	32321	32584	43129	43129					0.02430393325107616
RMFDGKFVV	9	Unmodified	_RMFDGKFVV_					0	0	0		nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	MULTI-SECPEP	A375_MHC_IP_R1	1	550.1920166015625	2	549.791869	1097.56919	-0.58112	-0.00031949	0.029691	1.6324E-05	-0.55143	-0.00030317	549.7918837740008	64.47	0.60892	64.47	64.191	64.8	0					36	11	4	0	0	0	0.30133	1	23288	23288		47.749	15.443	1	24934000			44193	5957	32321	32584	43130	43130					0.02430393325107616
RMFDGKFVV	9	Unmodified	_RMFDGKFVV_					0	0	0		nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	MULTI-SECPEP	A375_MHC_IP_R2	2	367.2637023925781	3	366.863672	1097.56919	0.1882	6.9043E-05	-0.44497	-0.00016324	-0.25677	-9.4199E-05	366.86357150229185	63.522	1.015	64.262	63.836	64.85	0.74023					35	19	3	0	0	0	0.34544	1	24049	24049		49.742	36.127	1	4776300			44194	5957	32321	32584	43131	43131					0.02430393325107616
RMFDGKFVV	9	Unmodified	_RMFDGKFVV_					0	0	0		nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	MULTI-SECPEP	A375_MHC_IP_R2	2	550.1915893554688	2	549.791869	1097.56919	-0.7264	-0.00039937	-0.43685	-0.00024017	-1.1632	-0.00063954	549.7916273264715	63.476	0.81358	64.217	63.885	64.699	0.74022					44	15	4	0	0	0	0.41731	1	24027	24027		38.176	12.776	1	29389000			44195	5957	32321	32584	43132	43132					0.02430393325107616
RMFDGKFVVA	10	Unmodified	_RMFDGKFVVA_					0	0	0		nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	MULTI-SECPEP	A375_MHC_IP_R1	1	585.7098999023438	2	585.310426	1168.6063	-0.16744	-9.8003E-05	-0.29138	-0.00017054	-0.45881	-0.00026855	585.3103824675392	62.94	0.61571	62.94	62.557	63.173	0					22	11	3	0	0	0	0.75968	1	22745	22745		30.703	21.958	1	4767700			44196	5957	32322	32585	43133	43133					0.02874064870889015
RMFDGKFVVA	10	Unmodified	_RMFDGKFVVA_					0	0	0		nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	MULTI-MSMS	A375_MHC_IP_R2	2	585.7102661132812	2	585.310426	1168.6063	-0.72343	-0.00042343	-0.10657	-6.2375E-05	-0.82999	-0.0004858	585.3103015541479	62.056	0.75948	62.799	62.421	63.18	0.74263					24	14	3	0	0	0	0.1298	1	23506	23506		57.249	35.712	1	5455500			44197	5957	32322	32585	43134	43134					0.02874064870889015
RMFDGKFVVA	10	Unmodified	_RMFDGKFVVA_					0	0	0		nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	MULTI-MSMS	A375_MHC_IP_R2	2	390.9424743652344	3	390.54271	1168.6063	-0.40355	-0.0001576	0.11476	4.4817E-05	-0.2888	-0.00011279	390.5426757053547	61.956	0.45569	62.699	62.521	62.976	0.74263					13	8	2	0	0	0	0.41205	1	23512	23512		29.281	18.966	1	1860700			44198	5957	32322	32585	43135	43135					0.02874064870889015
RMFDGKFVVA	10	Unmodified	_RMFDGKFVVA_					0	0	0		nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	MULTI-MATCH	A375_MHC_IP_R1	1		3	390.54271	1168.6063	0.24575	9.5977E-05	0.37742	0.0001474	0.62317	0.00024338	390.87706800399	62.94	0.41054	62.94	62.762	63.173	0	0.1208	0.00023549	NaN	29.281	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1581900			44199	5957	32322	32585							0.02874064870889015
RMFGIPVVV	9	Unmodified	_RMFGIPVVV_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1;ENST00000413059.1_1_X:57419493-57419883:-|nuORF	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MULTI-MSMS	A375_MHC_IP_R1	1	509.6989440917969	2	509.29933	1016.58411	-0.23681	-0.00012061	-0.21144	-0.00010769	-0.44826	-0.0002283	509.29916129938607	109.94	0.60982	109.94	109.63	110.24	0					19	11	2	0	0	0	0.25276	1	40291	40291		34.102	9.4286	1	4070900			44200	2212	32323	32586	43136	43136					0.07647885193114234
RMFLENETW	9	Unmodified	_RMFLENETW_					0	0	0		ENST00000441602.5_1_7:92883193-92979232:+|nuORF;nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000471188.5_1_7:92887656-92969983:+|nuORF	ENST00000441602.5_1_7:92883193-92979232:+|nuORF	ENST00000441602.5_1_7:92883193-92979232:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	613.6867065429688	2	613.287148	1224.55974	-0.54094	-0.00033175	-0.37945	-0.00023271	-0.92038	-0.00056446	613.2868944340063	85.235	0.4568	85.235	85.005	85.462	0					17	8	3	0	0	0	0.4465	1	31233	31233		31.268	16.43	1	2660100			44201	869	32324	32587	43137	43137					-0.043554197510729864
RMFLENETW	9	Unmodified	_RMFLENETW_					0	0	0		ENST00000441602.5_1_7:92883193-92979232:+|nuORF;nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000471188.5_1_7:92887656-92969983:+|nuORF	ENST00000441602.5_1_7:92883193-92979232:+|nuORF	ENST00000441602.5_1_7:92883193-92979232:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	613.287148	1224.55974	-0.46024	-0.00028226	-0.74051	-0.00045414	-1.2007	-0.0007364	613.2868364628337	84.434	0.45541	85.17	84.916	85.372	0.73602	-0.032862	-0.00023121	NaN	31.268	21	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2368200			44202	869	32324	32587							-0.043554197510729864
RMFPGEVAL	9	Unmodified	_RMFPGEVAL_					0	0	0		ENST00000480424.6_1_16:630268-633631:+|nuORF;nc|ENSG00000007541|Q9BRB3|PIGQ	ENST00000480424.6_1_16:630268-633631:+|nuORF	ENST00000480424.6_1_16:630268-633631:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	510.6327209472656	2	510.27077	1018.52699	-0.59656	-0.00030441	1.2382	0.00063183	0.64167	0.00032742	510.77346640602235	80.564	0.70985	80.564	80.34	81.049	0					20	13	2	0	0	0	0.46465	1	29421	29421		21.537	3.402	1	2831100			44203	12497	32325	32588	43138	43138					0.01846417916738119
RMFPGEVAL	9	Unmodified	_RMFPGEVAL_					0	0	0		ENST00000480424.6_1_16:630268-633631:+|nuORF;nc|ENSG00000007541|Q9BRB3|PIGQ	ENST00000480424.6_1_16:630268-633631:+|nuORF	ENST00000480424.6_1_16:630268-633631:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	509.6888427734375	2	510.27077	1018.52699	-0.68731	-0.00035072	0.17074	8.7126E-05	-0.51657	-0.00026359	510.2709547876886	79.813	0.45929	80.558	80.249	80.708	0.74473					14	8	2	0	0	0	0.61452	1	30295	30295		26.268	15.154	1	1549800			44204	12497	32325	32588	43139	43139					0.01846417916738119
RMFRRRLRL	9	Unmodified	_RMFRRRLRL_					0	0	0			REV__ENSG00000253729|ENST00000314191|PRKDC	REV__ENSG00000253729|ENST00000314191|PRKDC	MSMS	A375_MHC_IP_R1	1	435.2818603515625	3	435.271659	1302.79315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.97	1	148.97	148.47	149.47	0								0	0	0	0.15486	1	56874	56874		0.23584	0.095952	1		+		44205	22858	32326	32589	43140	43140					0.1538614626974777
RMFRRRLRL	9	Unmodified	_RMFRRRLRL_					0	0	0			REV__ENSG00000253729|ENST00000314191|PRKDC	REV__ENSG00000253729|ENST00000314191|PRKDC	MSMS	A375_MHC_IP_R2	2	435.2819519042969	3	435.271659	1302.79315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.99	1	149.01	148.51	149.51	0.018707								0	0	0	0.15486	1	57843	57843		0.23584	0.095952	1		+		44206	22858	32326	32589	43141	43141					0.1538614626974777
RMFSFQVY	8	Unmodified	_RMFSFQVY_					0	0	0		ENST00000371564.7_1_20:50004293-50004545:-|nuORF	ENST00000371564.7_1_20:50004293-50004545:-|nuORF	ENST00000371564.7_1_20:50004293-50004545:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	539.6810302734375	2	539.262945	1076.51134	-1.2344	-0.00066567	1.2982	0.00070007	0.063802	3.4406E-05	539.2637113304473	59.678	0.30341	60.425	60.198	60.501	0.74714					7	5	2	0	0	0	0.75805	1	22537	22537		18.135	4.2289	1	762050			44207	11178	32327	32590	43142	43142					-0.023858686002995455
RMGGGGGG	8	Unmodified	_RMGGGGGG_					0	0	0			REV__ENST00000368218.8_2_1:156698377-156698662:+|nuORF	REV__ENST00000368218.8_2_1:156698377-156698662:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	648.792236328125	1	648.288219	647.280943	-0.62202	-0.00040325	1.9439	0.0012602	1.3219	0.00085695	648.2908407556291	136.02	1.1775	136.02	135.69	136.87	0					35	22	3	0	0	0	0.972	1	52628	52628		0	0	1	2098700	+		44208	23989	32328	32591	43143	43143					-0.05680657142443124
RMGGGGGG	8	Unmodified	_RMGGGGGG_					0	0	0			REV__ENST00000368218.8_2_1:156698377-156698662:+|nuORF	REV__ENST00000368218.8_2_1:156698377-156698662:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	648.288219	647.280943	-0.53237	-0.00034513	2.9303	0.0018997	2.398	0.0015546	648.2907324105206	135.91	2.3554	136.02	135.38	137.74	0.11134	0.0014377	5.9312E-05	NaN	0	61	45	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1761100	+		44209	23989	32328	32591							-0.05680657142443124
RMHVRLYHKWK	11	Unmodified	_RMHVRLYHKWK_					0	0	0			REV__ENSG00000115568|ENST00000411696|ZNF142	REV__ENSG00000115568|ENST00000411696|ZNF142	MULTI-SECPEP	A375_MHC_IP_R1	1	777.3399047851562	2	777.435347	1552.85614	-0.73292	-0.0005698	0.50891	0.00039564	-0.22402	-0.00017416	777.4351969782019	134.24	0.60556	134.24	134.07	134.67	0					18	11	3	0	0	0	1.001	1	51824	51824		1.1933	0	1	4005100	+		44210	17894	32329	32592	43144	43144					0.10182667267099532
RMKKHVVV	8	Unmodified	_RMKKHVVV_					0	0	0			REV__ENSG00000114739|ENST00000352511|ACVR2B	REV__ENSG00000114739|ENST00000352511|ACVR2B	MSMS	A375_MHC_IP_R2	2	498.70892333984375	2	498.810396	995.60624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.76	1	143.79	143.29	144.29	0.024414								0	0	0	0.16876	1	56175	56175		2.5775	0	1		+		44211	17839	32330	32593	43145	43145					0.1082610966153652
RMLDPSIKGTF	11	Oxidation (M)	_RM(Oxidation (M))LDPSIKGTF_		RM(1)LDPSIKGTF		RM(63)LDPSIKGTF	0	0	1		nc|ENSG00000038274|Q9NZL9-4|MAT2B;nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B	nc|ENSG00000038274|Q9NZL9-4|MAT2B	nc|ENSG00000038274|Q9NZL9-4|MAT2B	MULTI-MSMS	A375_MHC_IP_R2	2	641.236572265625	2	640.837005	1279.65946	-0.5537	-0.00035483	-0.31091	-0.00019924	-0.86461	-0.00055408	640.8367034213417	43.966	0.35388	44.735	44.58	44.934	0.7691					11	6	2	0	0	0	0.14152	1	16444	16444		62.869	36.6	1	1956500			44212	1151	32331	32594	43146	43146		18			0.030813978628657424
RMLDPSIKGTF	11	Oxidation (M)	_RM(Oxidation (M))LDPSIKGTF_					0	0	1		nc|ENSG00000038274|Q9NZL9-4|MAT2B;nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B	nc|ENSG00000038274|Q9NZL9-4|MAT2B	nc|ENSG00000038274|Q9NZL9-4|MAT2B	MULTI-MATCH	A375_MHC_IP_R1	1		2	640.837005	1279.65946	-0.017424	-1.1166E-05	-0.18007	-0.00011539	-0.19749	-0.00012656	641.3384946722197	44.827	0.50605	44.827	44.575	45.081	0	0.046061	6.51E-05	NaN	62.869	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2105300			44213	1151	32331	32594				18			0.030813978628657424
RMLDPSIKGTF	11	Unmodified	_RMLDPSIKGTF_					0	0	0		nc|ENSG00000038274|Q9NZL9-4|MAT2B;nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B	nc|ENSG00000038274|Q9NZL9-4|MAT2B	nc|ENSG00000038274|Q9NZL9-4|MAT2B	MULTI-SECPEP	A375_MHC_IP_R2	2	633.2387084960938	2	632.839548	1263.66454	-1.1717	-0.00074148	0.058639	3.7109E-05	-1.113	-0.00070437	632.8396737872166	57.295	0.45938	58.044	57.762	58.221	0.74894					13	8	2	0	0	0	0.73549	1	21683	21683		39.213	22.1	1	2856900			44214	1151	32331	32595	43147	43147					0.04325701725474573
RMLDPSIKGTF	11	Unmodified	_RMLDPSIKGTF_					0	0	0		nc|ENSG00000038274|Q9NZL9-4|MAT2B;nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B	nc|ENSG00000038274|Q9NZL9-4|MAT2B	nc|ENSG00000038274|Q9NZL9-4|MAT2B	MULTI-MATCH	A375_MHC_IP_R1	1		2	632.839548	1263.66454	-0.69297	-0.00043854	0.68356	0.00043258	-0.0094113	-5.9559E-06	633.3416200592751	58.215	0.40491	58.215	57.974	58.379	0	0.085555	0.00026916	NaN	68.76	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3047500			44215	1151	32331	32595							0.04325701725474573
RMLPHAPGV	9	Oxidation (M)	_RM(Oxidation (M))LPHAPGV_		RM(1)LPHAPGV		RM(67)LPHAPGV	0	0	1		ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	A375_MHC_IP_R1	1	497.6684875488281	2	497.268561	992.52257	-0.50043	-0.00024885	-0.19048	-9.4721E-05	-0.69092	-0.00034357	497.26852824938817	27.239	1.9658	27.239	26.626	28.592	0					98	38	4	0	0	0	0.042197	3	8403	8116;8131;8403		67.344	44.195	1	166360000			44216	3399	32332	32596	43148;43149;43150	43150		171			0.026009534938225443
RMLPHAPGV	9	Oxidation (M)	_RM(Oxidation (M))LPHAPGV_		RM(1)LPHAPGV		RM(55)LPHAPGV	0	0	1		ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-SECPEP	A375_MHC_IP_R2	2	497.6683654785156	2	497.268561	992.52257	-0.71602	-0.00035605	-0.16197	-8.0544E-05	-0.87799	-0.0004366	497.26845810263427	35.14	0.75782	35.903	35.273	36.03	0.76338					21	14	2	0	0	0	0.1277	1	12691	12691		54.774	35.335	1	20325000			44217	3399	32332	32596	43151	43151		171			0.026009534938225443
RMLPHAPGV	9	Oxidation (M)	_RM(Oxidation (M))LPHAPGV_		RM(1)LPHAPGV		RM(64)LPHAPGV	0	0	1		ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-SECPEP	A375_MHC_IP_R2	2	497.6685791015625	2	497.268561	992.52257	-0.82001	-0.00040777	-0.021561	-1.0722E-05	-0.84157	-0.00041849	497.2686062926702	26.579	1.6297	27.238	26.653	28.282	0.65992					91	31	4	0	0	0	0.07754	1	9152	9152		64.236	47.294	1	116880000			44218	3399	32332	32596	43152	43152		171			0.026009534938225443
RMLPHAPGV	9	Unmodified	_RMLPHAPGV_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-SECPEP	A375_MHC_IP_R1	1	489.6708068847656	2	489.271104	976.527655	-0.28389	-0.0001389	-0.33801	-0.00016538	-0.6219	-0.00030428	489.2709871461609	36.111	0.96645	36.111	35.778	36.745	0					42	18	4	0	0	0	0.07754	1	12014	12014		74.423	74.423	1	59826000			44219	3399	32332	32597	43153	43153					0.03845257356431375
RMLPHAPGV	9	Unmodified	_RMLPHAPGV_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-SECPEP	A375_MHC_IP_R2	2	489.6706848144531	2	489.271104	976.527655	-0.78528	-0.00038421	0.057776	2.8268E-05	-0.7275	-0.00035595	489.27116998777433	35.14	1.2147	35.903	35.475	36.69	0.76338					56	23	4	0	0	0	0.050875	1	12662	12662		85.357	85.357	1	111520000			44220	3399	32332	32597	43154	43154					0.03845257356431375
RMLSRRLTMWW	11	Unmodified	_RMLSRRLTMWW_					0	0	0			REV__ENST00000301587.8_1_17:73036245-73038316:-|nuORF	REV__ENST00000301587.8_1_17:73036245-73038316:-|nuORF	MSMS	A375_MHC_IP_R1	1	512.6724243164062	3	512.607719	1534.80133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.577	1	44.577	44.077	45.077	0								0	0	0	0.16258	1	15560	15560		2.4348	0	1		+		44221	23427	32333	32598	43155	43155					0.055319124041943724
RMMDASVYL	9	Unmodified	_RMMDASVYL_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	A375_MHC_IP_R1	1	543.6593627929688	2	543.259545	1084.50454	-0.58515	-0.00031789	-0.05459	-2.9657E-05	-0.63974	-0.00034755	543.2595812640968	74.47	0.50682	74.47	74.197	74.704	0					13	9	2	0	0	0	0.69381	1	27129	27129		20.415	8.7742	1	1691800			44222	2385	32334	32599	43156	43156					-0.03433549543206027
RMMDASVYL	9	Unmodified	_RMMDASVYL_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-MSMS	A375_MHC_IP_R2	2	543.658935546875	2	543.259545	1084.50454	-0.77725	-0.00042225	-0.46958	-0.00025511	-1.2468	-0.00067735	543.2595207730681	73.588	0.45919	74.323	74.091	74.551	0.73541					15	8	3	0	0	0	0.27064	2	27956	27956;27972		32.786	4.2988	1	2558300			44223	2385	32334	32599	43157;43158	43157					-0.03433549543206027
RMPELQLI	8	Unmodified	_RMPELQLI_					0	0	0		ENSG00000070915|ENST00000563236|SLC12A3;nc|ENSG00000070915|P55017-3|SLC12A3;nc|ENSG00000070915|P55017-2|SLC12A3	ENSG00000070915|ENST00000563236|SLC12A3	ENSG00000070915|ENST00000563236|SLC12A3	MULTI-MSMS	A375_MHC_IP_R2	2	500.6893615722656	2	500.28642	998.558287	-0.58404	-0.00029218	-2.7725	-0.001387	-3.3565	-0.0016792	500.7868743369397	127.13	1.1137	127.39	127.26	128.37	0.26592					23	21	2	0	0	0	0.23604	1	49753	49753		64.236	6.765	1	43466000			44224	1503	32335	32600	43159	43159					0.05894990950844203
RMPSRLTTV	9	Unmodified	_RMPSRLTTV_					0	0	0		ENST00000451648.1_1_20:61294700-61297915:-|nuORF;ENST00000433126.1_1_20:61297286-61297915:-|nuORF;ENST00000411824.1_1_20:61294700-61297915:-|nuORF	ENST00000451648.1_1_20:61294700-61297915:-|nuORF	ENST00000451648.1_1_20:61294700-61297915:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	531.1995239257812	2	530.800226	1059.5859	-1.1827	-0.0006278	-0.26465	-0.00014047	-1.4474	-0.00076828	530.8001419007927	28.56	0.30229	29.259	29.132	29.434	0.69872					9	5	2	0	0	0	0.57806	1	9905	9905		26.268	8.1218	1	32211000			44225	11643	32336	32601	43160	43160					0.05848894211044353
RMREVQVKAKK	11	Unmodified	_RMREVQVKAKK_					0	0	0			REV__ENSG00000178974|ENST00000313833|FBXO34	REV__ENSG00000178974|ENST00000313833|FBXO34	MSMS	A375_MHC_IP_R1	1	686.8088989257812	2	686.913913	1371.81327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.34	1	135.34	134.84	135.84	0								0	0	0	0.16312	1	52184	52184		2.4985	1.3051	1		+		44226	21531	32337	32602	43161	43161					0.14223852419058858
RMRFYIRRMVK	11	Unmodified	_RMRFYIRRMVK_					0	0	0		CACNA1A|p.S1590Cfs*4|1|0.15|ENSG00000141837|chr19:13253087-13253088|AG/-|frameshift_variant;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A	CACNA1A|p.S1590Cfs*4|1|0.15|ENSG00000141837|chr19:13253087-13253088|AG/-|frameshift_variant	CACNA1A|p.S1590Cfs*4|1|0.15|ENSG00000141837|chr19:13253087-13253088|AG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	779.3446044921875	2	778.444857	1554.87516	-0.81649	-0.00063559	-1.3298	-0.0010352	-2.1463	-0.0016708	778.9455405457678	143.17	0.40237	143.17	142.84	143.24	0					11	7	2	0	0	0	0.73902	1	54950	54950		0.30703	0.30703	1	1234200			44227	273	32338	32603	43162	43162					0.11991880566506552
RMRKRIMWRRY	11	Unmodified	_RMRKRIMWRRY_					0	0	0			REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	552.0485229492188	3	551.313529	1650.91876	-0.76966	-0.00042432	1.3111	0.00072284	0.54147	0.00029852	551.6484068107186	102.92	0.5089	103.69	103.48	103.99	0.76428					21	9	4	0	0	0	0.73924	1	39021	39021		0.094841	0.094841	1	2756200	+		44228	15465	32339	32604	43163	43163					0.11933490063688623
RMRKRIMWRRY	11	Unmodified	_RMRKRIMWRRY_					0	0	0			REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6170043945312	3	551.313529	1650.91876	-0.76966	-0.00042432	1.3111	0.00072284	0.54147	0.00029852	551.6484068107186	102.92	0.5089	103.69	103.48	103.99	0.76428					21	9	4	0	0	0	1.0015	1	39007	39007		0.094841	0.094841	1	2756200	+		44229	15465	32339	32604	43164	43164					0.11933490063688623
RMRKRIMWRRY	11	Unmodified	_RMRKRIMWRRY_					0	0	0			REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	551.313529	1650.91876	-0.51826	-0.00028572	0.46437	0.00025601	-0.053891	-2.9711E-05	551.3133519342209	103.88	0.4574	103.88	103.68	104.13	0	0.098043	-0.00070134	NaN	0.094841	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1586600	+		44230	15465	32339	32604							0.11933490063688623
RMRLLNRFYRR	11	Unmodified	_RMRLLNRFYRR_					0	0	0		BRWD1|p.V1215L|1|0.11|ENSG00000185658|chr21:39218168-39218168|C/G|missense_variant	BRWD1|p.V1215L|1|0.11|ENSG00000185658|chr21:39218168-39218168|C/G|missense_variant	BRWD1|p.V1215L|1|0.11|ENSG00000185658|chr21:39218168-39218168|C/G|missense_variant	MSMS	A375_MHC_IP_R2	2	527.6489868164062	3	527.640411	1579.8994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.459	1	78.201	77.701	78.701	0.74293								0	0	0	0.16358	1	29414	29414		0.094841	0	1				44231	256	32340	32605	43165	43165					0.13264857044418932
RMRLRKLQ	8	Unmodified	_RMRLRKLQ_					0	0	0		nc|ENSG00000114670|Q8NG66-4|NEK11;ENSG00000114670|ENST00000383366|NEK11;nc|ENSG00000114670|Q8NG66-2|NEK11;nc|ENSG00000114670|Q8NG66-3|NEK11	nc|ENSG00000114670|Q8NG66-4|NEK11	nc|ENSG00000114670|Q8NG66-4|NEK11	MSMS	A375_MHC_IP_R2	2	367.6326599121094	3	367.56596	1099.67605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.61	1	64.35	63.85	64.85	0.74022								0	0	0	0.16876	1	24120	24120		5.7319	0.43497	1				44232	3237	32341	32606	43166	43166					0.13019988330165688
RMRQPRQSFLS	11	Unmodified	_RMRQPRQSFLS_					0	0	0			REV__ENST00000509702.5_1_4:23766811-23826805:-|nuORF	REV__ENST00000509702.5_1_4:23766811-23826805:-|nuORF	MSMS	A375_MHC_IP_R2	2	703.4474487304688	2	703.377694	1404.74084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.23	1	113.94	113.44	114.44	0.70985								0	0	0	0.16265	1	42693	42693		4.897	0	1		+		44233	17598	32342	32607	43167	43167					0.05465518345476994
RMRSKKFQKYI	11	Unmodified	_RMRSKKFQKYI_					0	0	0			REV__nc|ENSG00000263528|Q14164-2|IKBKE	REV__nc|ENSG00000263528|Q14164-2|IKBKE	MSMS	A375_MHC_IP_R2	2	495.6975402832031	3	495.622134	1483.84457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.066	1	66.804	66.304	67.304	0.73811								0	0	0	0.1624	1	25042	25042		2.8433	0.4085	1		+		44234	22920	32343	32608	43168	43168					0.12200425453147545
RMSDVVKGV	9	Unmodified	_RMSDVVKGV_					0	0	0		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MULTI-MSMS	A375_MHC_IP_R1	1	496.1733703613281	2	495.773677	989.5328	-0.45263	-0.0002244	-0.15105	-7.4887E-05	-0.60368	-0.00029929	495.7736446477205	31.169	0.60618	31.169	30.959	31.565	0					19	11	2	0	0	0	0.41879	1	10001	10001		23.79	4.5328	1	2635600			44235	6487	32344	32609	43169	43169					0.037615164284147795
RMSDVVKGV	9	Unmodified	_RMSDVVKGV_					0	0	0		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MULTI-SECPEP	A375_MHC_IP_R2	2	496.1731262207031	2	495.773677	989.5328	-0.48143	-0.00023868	-0.4566	-0.00022637	-0.93803	-0.00046505	495.77344396078024	30.452	0.55517	31.17	30.911	31.467	0.71857					19	10	2	0	0	0	0.40377	1	10705	10705		28.495	12.647	1	3291700			44236	6487	32344	32609	43170	43170					0.037615164284147795
RMSDVVKGV	9	Unmodified	_RMSDVVKGV_					0	0	0		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	495.773677	989.5328	-0.45263	-0.0002244	-0.15105	-7.4887E-05	-0.60368	-0.00029929	495.7736446477205	31.169	0.60618	31.169	30.959	31.565	0	-0.00051325	0.00017447	NaN	28.495	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2635600			44237	6487	32344	32609							0.037615164284147795
RMSGRCLGSM	10	Unmodified	_RMSGRCLGSM_					0	0	0		ENST00000373518.1_1_X:72347145-72347370:-|nuORF	ENST00000373518.1_1_X:72347145-72347370:-|nuORF	ENST00000373518.1_1_X:72347145-72347370:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	549.6543579101562	2	549.254271	1096.49399	-0.53132	-0.00029183	-0.28979	-0.00015917	-0.8211	-0.00045099	549.2541192008839	60.108	0.45864	60.108	59.955	60.414	0					15	8	2	0	0	0	0.57505	2	21650	21650;21687		22.736	4.5899	1	1622000			44238	11233	32345	32610	43171;43172	43171					-0.0503985546927197
RMSGRCLGSM	10	Unmodified	_RMSGRCLGSM_					0	0	0		ENST00000373518.1_1_X:72347145-72347370:-|nuORF	ENST00000373518.1_1_X:72347145-72347370:-|nuORF	ENST00000373518.1_1_X:72347145-72347370:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	549.254271	1096.49399	-0.53132	-0.00029183	-0.28979	-0.00015917	-0.8211	-0.00045099	549.2541192008839	60.108	0.45864	60.108	59.955	60.414	0	0.024106	6.3707E-05	NaN	22.736	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1622000			44239	11233	32345	32610							-0.0503985546927197
RMSGRCLGSM	10	Unmodified	_RMSGRCLGSM_					0	0	0		ENST00000373518.1_1_X:72347145-72347370:-|nuORF	ENST00000373518.1_1_X:72347145-72347370:-|nuORF	ENST00000373518.1_1_X:72347145-72347370:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	549.254271	1096.49399	-1.191	-0.00065416	-0.45186	-0.00024819	-1.6429	-0.00090234	549.2537517887073	59.313	0.50567	60.06	59.793	60.299	0.74714	-0.024106	-0.00011434	NaN	22.736	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2096800			44240	11233	32345	32610							-0.0503985546927197
RMSPVRNIARL	11	Unmodified	_RMSPVRNIARL_					0	0	0			REV__nc|ENSG00000196557|O95180-2|CACNA1H;REV__nc|ENSG00000006283|O43497-27|CACNA1G	REV__nc|ENSG00000196557|O95180-2|CACNA1H	MULTI-MSMS	A375_MHC_IP_R2	2	438.6637878417969	3	438.259196	1311.75576	-0.11406	-4.999E-05	1.4469	0.00063412	1.3328	0.00058413	438.25990856311347	142.9	0.30359	142.93	142.79	143.09	0.030731					10	5	3	0	0	0	0.73881	1	55846	55846		0.50596	0	1	1404900	+		44241	27437;16133	32346	32611	43173	43173					0.11235010213499663
RMSRHERQLF	10	Unmodified	_RMSRHERQLF_					0	0	0			REV__ENST00000452475.5_1_7:72986280-72992879:-|nuORF	REV__ENST00000452475.5_1_7:72986280-72992879:-|nuORF	MSMS	A375_MHC_IP_R1	1	453.64520263671875	3	453.906934	1358.69897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.169	1	30.169	29.669	30.669	0								0	0	0	0.15306	1	9550	9550		10.899	4.2755	1		+		44242	17459	32347	32612	43174	43174					0.033969626569614775
RMTDKWRMHSL	11	Unmodified	_RMTDKWRMHSL_					0	0	0			REV__nc|ENSG00000110880|Q9ULV4-3|CORO1C	REV__nc|ENSG00000110880|Q9ULV4-3|CORO1C	MSMS	A375_MHC_IP_R1	1	487.4793701171875	3	487.579829	1459.71766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.236	1	36.236	35.736	36.736	0								0	0	0	0.16224	1	12114	12114		7.0371	3.1912	1		+		44243	27171	32348	32613	43175	43175					0.0061875623650848866
RMTKLWDKFKK	11	Unmodified	_RMTKLWDKFKK_					0	0	0			REV__tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	REV__tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	494.6861877441406	3	494.286751	1479.83842	-0.60964	-0.00030133	-0.13176	-6.5126E-05	-0.74139	-0.00036646	494.28656758790095	132.74	1.0164	132.74	132.08	133.1	0					53	19	4	0	0	0	0.73897	1	51033	51033		0.094841	0	1	9691900	+		44244	28413	32349	32614	43176	43176					0.11769907221582798
RMVQYTKSKIE	11	Unmodified	_RMVQYTKSKIE_					0	0	0			REV__ENSG00000272573|ENST00000446157|MUSTN1	REV__ENSG00000272573|ENST00000446157|MUSTN1	MULTI-MSMS	A375_MHC_IP_R2	2	461.6200866699219	3	461.586867	1381.73877	-0.78894	-0.00036417	-0.059046	-2.7255E-05	-0.84799	-0.00039142	461.5868666248755	19.867	1.1166	20.477	19.892	21.008	0.61029					63	21	4	0	0	0	0.7328	1	6263	6263		6.2344	0.36622	1	16085000	+		44245	22949	32350	32615	43177	43177					0.06317044817046735
RMVRRFHTLWR	11	Unmodified	_RMVRRFHTLWR_					0	0	0		ENST00000532651.5_1_11:8832827-8892921:-|nuORF	ENST00000532651.5_1_11:8832827-8892921:-|nuORF	ENST00000532651.5_1_11:8832827-8892921:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	520.7160034179688	3	519.961373	1556.86229	-0.47067	-0.00024473	0.24058	0.00012509	-0.23009	-0.00011964	519.9614484886846	148.78	1.2576	148.8	148.32	149.58	0.018707					36	27	2	0	0	0	1.0015	1	57631	57631		0	0	1	147580			44246	13187	32351	32616	43178	43178					0.10613185498664279
RMWKRRRRRRG	11	Unmodified	_RMWKRRRRRRG_					0	0	0			REV__CC2D2A|p.K237Rfs*26|1|0.25|ENSG00000048342|chr4:15511415-15511416|-/GGAGGAGGAGGAGG|frameshift_variant	REV__CC2D2A|p.K237Rfs*26|1|0.25|ENSG00000048342|chr4:15511415-15511416|-/GGAGGAGGAGGAGG|frameshift_variant	MSMS	A375_MHC_IP_R2	2	807.4812622070312	2	807.48456	1612.95457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.36	1	124.69	124.19	125.19	0.32969								0	0	0	0.1636	1	48063	48063		0	0	1		+		44247	15588	32352	32617	43179	43179					0.17260708355502175
RMYDERAQEW	10	Unmodified	_RMYDERAQEW_					0	0	0		ENSG00000198642|ENST00000359039|KLHL9;KLHL9|p.M432*|1|0.89|ENSG00000198642|chr9:21333566-21333566|T/-|frameshift_variant	ENSG00000198642|ENST00000359039|KLHL9	ENSG00000198642|ENST00000359039|KLHL9	MULTI-SECPEP	A375_MHC_IP_R1	1	462.27490234375	3	461.875188	1382.60373	-0.11972	-5.5295E-05	0.23276	0.00010751	0.11304	5.2211E-05	461.8751699218531	35.22	0.45855	35.22	35.013	35.472	0					15	8	2	0	0	0	0.93999	1	11748	11748		7.4771	2.7611	1	1816300			44248	9293	32353	32618	43180	43180					-0.0722643532476468
RMYDERAQEW	10	Unmodified	_RMYDERAQEW_					0	0	0		ENSG00000198642|ENST00000359039|KLHL9;KLHL9|p.M432*|1|0.89|ENSG00000198642|chr9:21333566-21333566|T/-|frameshift_variant	ENSG00000198642|ENST00000359039|KLHL9	ENSG00000198642|ENST00000359039|KLHL9	MULTI-MSMS	A375_MHC_IP_R2	2	462.2749938964844	3	461.875188	1382.60373	-0.70805	-0.00032703	-0.21279	-9.8282E-05	-0.92084	-0.00042531	461.87510689403814	34.474	0.35726	35.226	35.057	35.414	0.75225					12	6	2	0	0	0	0.70148	1	12455	12455		11.631	7.2252	1	3879400			44249	9293	32353	32618	43181	43181					-0.0722643532476468
RMYPLKPTWW	10	Unmodified	_RMYPLKPTWW_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	A375_MHC_IP_R1	1	689.7603149414062	2	689.36045	1376.70635	-0.82551	-0.00056907	0.31916	0.00022001	-0.50635	-0.00034906	689.3608468956838	85.383	0.45648	85.383	85.21	85.667	0					19	8	3	0	0	0	0.17879	2	31279	31279;31337		51.415	39.921	1	1364000			44250	6659	32354	32619	43182;43183	43182					0.033063022046690094
RMYPLKPTWW	10	Unmodified	_RMYPLKPTWW_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-SECPEP	A375_MHC_IP_R1	1	460.30914306640625	3	459.909392	1376.70635	-0.44348	-0.00020396	-0.1632	-7.5056E-05	-0.60668	-0.00027902	459.9093989165317	85.457	0.60918	85.457	85.159	85.768	0					27	11	4	0	0	0	0.54012	1	31284	31284		33.821	30.234	1	2831300			44251	6659	32354	32619	43184	43184					0.033063022046690094
RMYPLKPTWW	10	Unmodified	_RMYPLKPTWW_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-SECPEP	A375_MHC_IP_R2	2	460.3092956542969	3	459.909392	1376.70635	-0.30854	-0.0001419	-0.34198	-0.00015728	-0.65052	-0.00029918	459.9092293526603	84.466	0.5555	85.202	84.968	85.523	0.73601					27	10	4	0	0	0	0.63381	1	32095	32095		32.898	31.155	1	3527600			44252	6659	32354	32619	43185	43185					0.033063022046690094
RMYPLKPTWW	10	Unmodified	_RMYPLKPTWW_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MATCH	A375_MHC_IP_R2	2		2	689.36045	1376.70635	-0.56948	-0.00039258	0.48417	0.00033377	-0.085306	-5.8807E-05	689.361129562788	84.511	0.45384	85.247	85.018	85.472	0.73601	-0.067744	0.00011098	NaN	51.415	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2038200			44253	6659	32354	32619							0.033063022046690094
RMYVRIFKELI	11	Unmodified	_RMYVRIFKELI_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-SECPEP	A375_MHC_IP_R2	2	490.65631103515625	3	489.955002	1466.84318	-0.44494	-0.000218	0.31051	0.00015214	-0.13443	-6.5864E-05	489.95484262429704	68.107	0.4079	68.842	68.611	69.018	0.73511					12	7	2	0	0	0	1.001	1	25804	25804		1.4551	0.94916	1	1182700	+		44254	21820	32355	32620	43186	43186					0.12842791364391815
RNARLFLA	8	Unmodified	_RNARLFLA_					0	0	0			REV__ENSG00000132000|ENST00000588872|PODNL1	REV__ENSG00000132000|ENST00000588872|PODNL1	MULTI-SECPEP	A375_MHC_IP_R1	1	481.190185546875	2	480.790518	959.566484	-0.75049	-0.00036083	-0.20173	-9.6992E-05	-0.95222	-0.00045782	480.7902933822863	143.71	0.54018	143.71	143.49	144.03	0					18	10	3	0	0	0	0.972	1	55131	55131		2.8892	2.0956	1	4840400	+		44255	18633	32356	32621	43187	43187					0.08508305982445563
RNDTGIFLVDY	11	Unmodified	_RNDTGIFLVDY_					0	0	0			REV__SEMA3E|p.G458R|1|0.63|ENSG00000170381|chr7:83396724-83396724|C/T|missense_variant	REV__SEMA3E|p.G458R|1|0.63|ENSG00000170381|chr7:83396724-83396724|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	657.227294921875	2	656.830234	1311.64592	-0.70642	-0.000464	-3.6211	-0.0023784	-4.3275	-0.0028424	656.8281449786964	143.94	0.19888	143.96	143.84	144.04	0.024414					7	3	3	0	0	0	0.73332	1	56263	56263		5.7319	2.1354	1	502340	+		44256	27938	32357	32622	43188	43188					0.0025586335527805204
RNDYKYNKKTF	11	Unmodified	_RNDYKYNKKTF_					0	0	0			REV__tr|U7SKK3|U7SKK3_FUSNUDUF4253domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02059PE=4SV=1	REV__tr|U7SKK3|U7SKK3_FUSNUDUF4253domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02059PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	370.3453674316406	4	369.945305	1475.75211	0.25464	9.4202E-05	1.1915	0.00044078	1.4461	0.00053499	370.1967250553171	19.801	0.86328	19.801	19.471	20.334	0					35	16	3	0	0	0	0.72728	1	4999	4999		6.2344	3.6031	1	3512800	+		44257	28256	32358	32623	43189	43189					0.0332661892057331
RNDYKYNKKTF	11	Unmodified	_RNDYKYNKKTF_					0	0	0			REV__tr|U7SKK3|U7SKK3_FUSNUDUF4253domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02059PE=4SV=1	REV__tr|U7SKK3|U7SKK3_FUSNUDUF4253domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02059PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	370.2925720214844	4	369.945305	1475.75211	0.25464	9.4202E-05	1.1915	0.00044078	1.4461	0.00053499	370.1967250553171	19.801	0.86328	19.801	19.471	20.334	0					35	16	3	0	0	0	0.99778	1	4966	4966		3.8459	0.25323	1	3512800	+		44258	28256	32358	32623	43190	43190					0.0332661892057331
RNEALNLQQF	10	Unmodified	_RNEALNLQQF_					0	0	0			REV__NLRC4|p.G946E|2|0.35|ENSG00000091106|chr2:32224711-32224711|C/T|missense_variant	REV__NLRC4|p.G946E|2|0.35|ENSG00000091106|chr2:32224711-32224711|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	617.22216796875	2	616.822744	1231.63093	-0.040239	-2.482E-05	-0.90253	-0.0005567	-0.94277	-0.00058152	616.8223647980697	127.69	0.25233	127.69	127.52	127.77	0					11	4	4	0	0	0	0.050548	1	48986	48986		75.761	44.492	1	16692000	+		44259	27611	32359	32624	43191	43191					0.02438416277914257
RNFTFNVKF	9	Unmodified	_RNFTFNVKF_					0	0	0			REV__nc|ENSG00000155363|Q9HCE1-2|MOV10	REV__nc|ENSG00000155363|Q9HCE1-2|MOV10	MULTI-MSMS	A375_MHC_IP_R1	1	391.9454040527344	3	391.545219	1171.61383	0.20491	8.0232E-05	1.3867	0.00054297	1.5917	0.00062321	391.5453026211381	33.729	0.45413	33.729	33.496	33.95	0					28	8	4	0	0	0	0.31062	1	11057	11057		29.841	10.215	1	6039100	+		44260	19922	32360	32625	43192	43192					0.0348854046278575
RNFVDKRQW	9	Unmodified	_RNFVDKRQW_					0	0	0		ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	MULTI-MSMS	A375_MHC_IP_R2	2	417.2912902832031	3	416.891389	1247.65234	-0.48244	-0.00020112	0.40558	0.00016908	-0.076856	-3.2041E-05	416.8916596186528	25.454	0.30349	26.098	25.976	26.28	0.64368					9	5	2	0	0	0	0.14858	1	8552	8552		32.898	21.38	1	4362400			44261	5318	32361	32626	43193	43193					0.03841846097316193
RNGDFAKLLF	10	Unmodified	_RNGDFAKLLF_					0	0	0			REV__ENST00000415149.6_1_3:107524383-107524587:+|nuORF	REV__ENST00000415149.6_1_3:107524383-107524587:+|nuORF	MSMS	A375_MHC_IP_R2	2	590.70166015625	2	590.827298	1179.64004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.4	1	103.16	102.66	103.66	0.76428								0	0	0	0.15391	1	38799	38799		8.1555	0.8663	1		+		44262	24515	32362	32627	43194	43194					0.05740809634266952
RNHGLFVIR	9	Unmodified	_RNHGLFVIR_					0	0	0		ENSG00000160999|ENST00000444095|SH2B2;nc|ENSG00000160999|O14492-2|SH2B2	ENSG00000160999|ENST00000444095|SH2B2	ENSG00000160999|ENST00000444095|SH2B2	MULTI-SECPEP	A375_MHC_IP_R1	1	370.92962646484375	3	371.220958	1110.64105	0.38435	0.00014268	-0.018012	-6.6863E-06	0.36634	0.00013599	371.2207763047076	34.96	0.25485	34.96	34.861	35.116	0					5	4	2	0	0	0	0.8028	1	11584	11584		0.96228	0.96228	1	2062200			44263	6457	32363	32628	43195	43195					0.09015068793814862
RNHVRLRRG	9	Unmodified	_RNHVRLRRG_					0	0	0			REV__ENSG00000149256|ENST00000278550|TENM4	REV__ENSG00000149256|ENST00000278550|TENM4	MULTI-MSMS	A375_MHC_IP_R2	2	582.7576293945312	2	582.352671	1162.69079	-0.18274	-0.00010642	3.202	0.0018647	3.0193	0.0017583	582.354589124956	142.29	0.91464	142.32	142.03	142.94	0.030731					22	17	2	0	0	0	0.76628	1	55605	55605		2.0598	1.6014	1	3592000	+		44264	19669	32364	32629	43196	43196					0.1159519652248946
RNIEVFERQV	10	Unmodified	_RNIEVFERQV_					0	0	0			REV__ENST00000553648.2_1_14:51428384-51428663:-|nuORF	REV__ENST00000553648.2_1_14:51428384-51428663:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	430.93505859375	3	430.570204	1288.68878	-0.45016	-0.00019382	-0.47037	-0.00020253	-0.92053	-0.00039635	430.90416583856677	23.625	0.3057	23.625	23.432	23.737	0					10	5	3	0	0	0	0.68638	1	6506	6506		9.2438	2.6203	1	3688200	+		44265	26068	32365	32630	43197	43197					0.05598678203364216
RNILVIPDLYL	11	Unmodified	_RNILVIPDLYL_					0	0	0		ENSG00000182890|ENST00000328078|GLUD2	ENSG00000182890|ENST00000328078|GLUD2	ENSG00000182890|ENST00000328078|GLUD2	MULTI-SECPEP	A375_MHC_IP_R2	2	664.1260986328125	2	664.900463	1327.78637	-0.74263	-0.00049378	-0.029666	-1.9725E-05	-0.7723	-0.0005135	665.4009601032279	133.97	0.3054	134.13	134.01	134.31	0.16487					6	5	2	0	0	0	0.99955	1	52726	52726		2.9952	0	1	3056400			44266	8444	32366	32631	43198	43198					0.13559067079518172
RNIRIDIY	8	Unmodified	_RNIRIDIY_					0	0	0			REV__nc|ENSG00000060656|Q92729-4|PTPRU	REV__nc|ENSG00000060656|Q92729-4|PTPRU	MULTI-MSMS	A375_MHC_IP_R1	1	355.2732849121094	3	354.873336	1061.59818	0.071115	2.5237E-05	0.30084	0.00010676	0.37196	0.000132	354.8735404582505	51.268	0.86311	51.268	50.864	51.728	0					28	16	3	0	0	0	0.7773	1	18165	18165		6.2058	0	1	4596300	+		44267	27108	32367	32632	43199	43199					0.06984253945756791
RNKHVIRIY	9	Unmodified	_RNKHVIRIY_					0	0	0			REV__ENSG00000077044|ENST00000264057|DGKD	REV__ENSG00000077044|ENST00000264057|DGKD	MULTI-MSMS	A375_MHC_IP_R2	2	600.4224243164062	2	599.862006	1197.70946	-0.32745	-0.00019642	-1.5877	-0.0009524	-1.9152	-0.0011488	599.8613466354578	142.98	1.0649	143.01	142.43	143.5	0.030731					47	20	3	0	0	0	0.75523	1	55972	55972		2.0598	0	1	7704000	+		44268	16685	32368	32633	43200	43200					0.11851313373699668
RNKHVIRIY	9	Unmodified	_RNKHVIRIY_					0	0	0			REV__ENSG00000077044|ENST00000264057|DGKD	REV__ENSG00000077044|ENST00000264057|DGKD	MULTI-SECPEP	A375_MHC_IP_R2	2	600.2611083984375	2	599.862006	1197.70946	-0.32745	-0.00019642	-1.5877	-0.0009524	-1.9152	-0.0011488	599.8613466354578	142.98	1.0649	143.01	142.43	143.5	0.030731					47	20	3	0	0	0	0.80005	1	55836	55836		2.0598	0	1	7704000	+		44269	16685	32368	32633	43201	43201					0.11851313373699668
RNKKGIRYEL	10	Unmodified	_RNKKGIRYEL_					0	0	0			REV__ENST00000216121.11_1_22:29951115-29951346:-|nuORF	REV__ENST00000216121.11_1_22:29951115-29951346:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	638.7872314453125	2	638.877853	1275.74115	-1.023	-0.00065356	-0.80096	-0.00051172	-1.8239	-0.0011653	638.8772630969762	142.06	1.0647	142.06	141.32	142.38	0					40	20	3	0	0	0	0.94862	1	54297	54297		1.6526	0	1	3297300	+		44270	23030	32369	32634	43202	43202					0.11431261336997522
RNKKGIRYEL	10	Unmodified	_RNKKGIRYEL_					0	0	0			REV__ENST00000216121.11_1_22:29951115-29951346:-|nuORF	REV__ENST00000216121.11_1_22:29951115-29951346:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	638.877853	1275.74115	-0.57087	-0.00036471	-1.2082	-0.00077188	-1.779	-0.0011366	638.8771070133803	142.1	1.0169	142.14	141.36	142.38	0.030731	0.039438	-0.00026662	NaN	1.6526	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2911600	+		44271	23030	32369	32634							0.11431261336997522
RNLGFETSAF	10	Unmodified	_RNLGFETSAF_					0	0	0		nc|ENSG00000143393|Q9UBF8-3|PI4KB;nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	MULTI-MSMS	A375_MHC_IP_R1	1	381.5929260253906	3	381.192734	1140.55637	0.40271	0.00015351	0.19233	7.3315E-05	0.59504	0.00022683	381.1927155473246	34.994	0.66135	34.994	34.708	35.369	0					22	12	3	0	0	0	0.70329	1	11579	11579		6.1918	0.78914	1	12056000			44272	5383	32370	32635	43203	43203					-0.008283465334216089
RNLGFETSAF	10	Unmodified	_RNLGFETSAF_					0	0	0		nc|ENSG00000143393|Q9UBF8-3|PI4KB;nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	MULTI-MSMS	A375_MHC_IP_R2	2	381.5927429199219	3	381.192734	1140.55637	-0.37328	-0.00014229	0.37187	0.00014175	-0.0014122	-5.3832E-07	381.19278881224693	34.177	0.61105	34.929	34.753	35.364	0.75225					25	11	3	0	0	0	0.70329	2	12307	12307;12320		6.1918	0.40842	1	16226000			44273	5383	32370	32635	43204;43205	43204					-0.008283465334216089
RNLNGPGK	8	Unmodified	_RNLNGPGK_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	A375_MHC_IP_R2	2	428.6434020996094	2	428.243401	854.472249	-0.20903	-8.9514E-05	-0.17031	-7.2934E-05	-0.37934	-0.00016245	428.2432773267048	105.86	2.39	106.62	105.76	108.15	0.75977					96	46	3	0	0	0	0.77797	1	40204	40204		2.3027	0	1	8043900	+		44274	17711	32371	32636	43206	43206					0.03919167160336201
RNLNVETTRTR	11	Unmodified	_RNLNVETTRTR_					0	0	0		ENSG00000204449|ENST00000448984|TRIM49C;ENSG00000182053|ENST00000332682|TRIM49B;ENSG00000168930|ENST00000329758|TRIM49	ENSG00000204449|ENST00000448984|TRIM49C	ENSG00000204449|ENST00000448984|TRIM49C	MSMS	A375_MHC_IP_R2	2	680.3014526367188	2	680.376206	1358.73786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.34	1	143.37	142.87	143.87	0.024414								0	0	0	0.16302	1	56022	56022		2.9952	0	1				44275	7362	32372	32637	43207	43207					0.07283966492286709
RNLRKLYKKW	10	Unmodified	_RNLRKLYKKW_					0	0	0			REV__ENST00000260731.4_1_10:94405253-94405319:+|nuORF	REV__ENST00000260731.4_1_10:94405253-94405319:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	469.3571472167969	3	468.957734	1403.85137	-0.86821	-0.00040715	-0.99614	-0.00046715	-1.8643	-0.0008743	468.9572467221197	24.053	0.35656	24.697	24.55	24.907	0.64368					11	6	2	0	0	0	0.72321	1	7846	7846		1.9064	0.8928	1	4109400	+		44276	23179	32373	32638	43208	43208					0.16560106396013907
RNLRKLYKKW	10	Unmodified	_RNLRKLYKKW_					0	0	0			REV__ENST00000260731.4_1_10:94405253-94405319:+|nuORF	REV__ENST00000260731.4_1_10:94405253-94405319:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	469.6682434082031	3	468.957734	1403.85137	-0.86821	-0.00040715	-0.99614	-0.00046715	-1.8643	-0.0008743	468.9572467221197	24.053	0.35656	24.697	24.55	24.907	0.64368					11	6	2	0	0	0	0.94891	1	7857	7857		1.9064	0.8928	1	4109400	+		44277	23179	32373	32638	43209	43209					0.16560106396013907
RNLRKLYKKW	10	Unmodified	_RNLRKLYKKW_					0	0	0			REV__ENST00000260731.4_1_10:94405253-94405319:+|nuORF	REV__ENST00000260731.4_1_10:94405253-94405319:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	468.957734	1403.85137	-0.40803	-0.00019135	-1.258	-0.00058994	-1.666	-0.00078129	468.95711230358916	24.673	0.40528	24.673	24.547	24.953	0	-0.012008	-0.00016909	NaN	1.9064	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7001500	+		44278	23179	32373	32638							0.16560106396013907
RNLRKLYKKWT	11	Unmodified	_RNLRKLYKKWT_					0	0	0			REV__ENST00000260731.4_1_10:94405253-94405319:+|nuORF	REV__ENST00000260731.4_1_10:94405253-94405319:+|nuORF	MSMS	A375_MHC_IP_R2	2	753.514892578125	2	753.456802	1504.89905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.77	1	142.8	142.3	143.3	0.030731								0	0	0	0.16353	1	55810	55810		0.35063	0.081612	1		+		44279	23179	32374	32639	43210	43210					0.16679760596184678
RNLRVGKMK	9	Unmodified	_RNLRVGKMK_					0	0	0			REV__ENST00000492773.5_1_3:183859720-183860594:+|nuORF	REV__ENST00000492773.5_1_3:183859720-183860594:+|nuORF	MSMS	A375_MHC_IP_R2	2	367.94610595703125	3	367.893965	1100.66007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.948	1	66.686	66.186	67.186	0.73811								0	0	0	0.15486	1	25006	25006		4.5289	0.93237	1		+		44280	25413	32375	32640	43211	43211					0.11376282093237933
RNLTEVLLN	9	Unmodified	_RNLTEVLLN_					0	0	0		ENSG00000121446|ENST00000294854|RGSL1;nc|ENSG00000121446|A5PLK6-4|RGSL1;nc|ENSG00000121446|A5PLK6-5|RGSL1;nc|ENSG00000121446|A5PLK6-3|RGSL1;nc|ENSG00000121446|A5PLK6-2|RGSL1	ENSG00000121446|ENST00000294854|RGSL1	ENSG00000121446|ENST00000294854|RGSL1	MSMS	A375_MHC_IP_R2	2	536.43896484375	2	536.31148	1070.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.045	1	95.796	95.296	96.296	0.75045								0	0	0	0.15486	1	36110	36110		5.2969	0	1				44281	3721	32376	32641	43212	43212					0.07592816880332975
RNLYLVLLF	9	Unmodified	_RNLYLVLLF_					0	0	0			REV__ENSG00000146242|ENST00000369750|TPBG	REV__ENSG00000146242|ENST00000369750|TPBG	MSMS	A375_MHC_IP_R2	2	384.3101806640625	3	384.237615	1149.69102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.322	1	97.073	96.573	97.573	0.75045								0	0	0	0.15486	1	36574	36574		1.0715	0	1		+		44282	19525	32377	32642	43213	43213					0.12215758679121791
RNPDQFKAL	9	Unmodified	_RNPDQFKAL_					0	0	0		nc|ENSG00000143748|O15381-5|NVL;nc|ENSG00000143748|O15381-3|NVL;ENSG00000143748|ENST00000281701|NVL;nc|ENSG00000143748|O15381-2|NVL;nc|ENSG00000143748|O15381-4|NVL	nc|ENSG00000143748|O15381-5|NVL;nc|ENSG00000143748|O15381-4|NVL	nc|ENSG00000143748|O15381-5|NVL	MULTI-SECPEP	A375_MHC_IP_R2	2	364.2485046386719	3	363.533091	1087.57744	-0.094711	-3.4431E-05	-0.63771	-0.00023183	-0.73242	-0.00026626	363.53286415909145	30.42	0.60765	31.139	30.809	31.417	0.71857					21	11	2	0	0	0	0.75164	1	10806	10806		9.544	0	1	2542800			44283	14655;14654	32378	32643	43214	43214					0.03715663566094918
RNPQRRIRRWL	11	Unmodified	_RNPQRRIRRWL_					0	0	0		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	MULTI-MSMS	A375_MHC_IP_R1	1	776.3661499023438	2	775.966191	1549.91783	-0.82107	-0.00063713	-0.09492	-7.3654E-05	-0.91599	-0.00071078	775.9659224662473	143.17	0.70625	143.17	142.74	143.45	0					37	13	4	0	0	0	0.73897	1	55010	55010		0.35063	0.35063	1	5858000			44284	5392	32379	32644	43215	43215					0.16486735010607845
RNPTTLIERKH	11	Unmodified	_RNPTTLIERKH_					0	0	0			REV__nc|ENSG00000165304|Q14680-3|MELK	REV__nc|ENSG00000165304|Q14680-3|MELK	MSMS	A375_MHC_IP_R2	2	682.6301879882812	2	682.891492	1363.76843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.807	1	100.57	100.07	101.07	0.76278								0	0	0	0.16265	1	37857	37857		4.897	2.1618	1		+		44285	20572	32380	32645	43216	43216					0.10109744877354387
RNQHRHRH	8	Unmodified	_RNQHRHRH_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MSMS	A375_MHC_IP_R2	2	381.12713623046875	3	380.871323	1139.59214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.611	1	18.207	17.707	18.707	0.59616								0	0	0	0.16876	1	5187	5187		0	0	1				44286	8538	32381	32646	43217	43217					0.027925932774451212
RNRARNRWRL	10	Unmodified	_RNRARNRWRL_					0	0	0			REV__nc|ENSG00000223806|Q6XXX2|LINC00114	REV__nc|ENSG00000223806|Q6XXX2|LINC00114	MULTI-SECPEP	A375_MHC_IP_R1	1	467.0077209472656	3	466.608098	1396.80247	-0.59065	-0.0002756	0.24445	0.00011406	-0.3462	-0.00016154	466.60820959728045	138.59	1.7776	138.59	138.25	140.03	0					71	34	3	0	0	0	0.95062	1	53658	53658		0.15932	0.15932	1	4571200	+		44287	27502	32382	32647	43218	43218					0.11993630879624106
RNRARNRWRL	10	Unmodified	_RNRARNRWRL_					0	0	0			REV__nc|ENSG00000223806|Q6XXX2|LINC00114	REV__nc|ENSG00000223806|Q6XXX2|LINC00114	MULTI-MSMS	A375_MHC_IP_R2	2	467.0077209472656	3	466.608098	1396.80247	-0.5783	-0.00026984	0.29711	0.00013863	-0.28119	-0.0001312	466.6081739049197	132.85	4.1743	133.02	132.48	136.66	0.16487					318	81	7	0	0	0	0.72658	1	52705	52705		0.13989	0.04505	1	633400000	+		44288	27502	32382	32647	43219	43219					0.11993630879624106
RNRARNRWRL	10	Unmodified	_RNRARNRWRL_					0	0	0			REV__nc|ENSG00000223806|Q6XXX2|LINC00114	REV__nc|ENSG00000223806|Q6XXX2|LINC00114	MULTI-MSMS	A375_MHC_IP_R2	2	467.0082702636719	3	466.608098	1396.80247	-0.45255	-0.00021116	0.1296	6.0472E-05	-0.32295	-0.00015069	466.9425430806043	138.56	2.7841	138.65	137.45	140.24	0.083969					97	54	2	0	0	0	0.72645	1	54714	54714		0.15932	0.064481	1	5156200	+		44289	27502	32382	32647	43220	43220					0.11993630879624106
RNRARNRWRL	10	Unmodified	_RNRARNRWRL_					0	0	0			REV__nc|ENSG00000223806|Q6XXX2|LINC00114	REV__nc|ENSG00000223806|Q6XXX2|LINC00114	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	466.608098	1396.80247	-0.51752	-0.00024148	0.24557	0.00011459	-0.27195	-0.00012689	466.60815927238104	132.93	5.2046	132.93	132.49	137.69	0	-0.043985	-3.7665E-05	NaN	0.13989	365	101	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	579080000	+		44290	27502	32382	32647							0.11993630879624106
RNRARNRWRL	10	Unmodified	_RNRARNRWRL_					0	0	0			REV__nc|ENSG00000223806|Q6XXX2|LINC00114	REV__nc|ENSG00000223806|Q6XXX2|LINC00114	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	466.608098	1396.80247	-0.5783	-0.00026984	0.29711	0.00013863	-0.28119	-0.0001312	466.6081739049197	132.85	4.1743	133.02	132.48	136.66	0.16487	0.043985	3.4477E-05	NaN	0.13989	318	81	7	NaN	NaN	NaN	NaN	0				NaN	NaN	0	633400000	+		44291	27502	32382	32647							0.11993630879624106
RNRDRNEKGE	10	Unmodified	_RNRDRNEKGE_					0	0	0			REV__UBAP2L|p.D127N|1|0.32|ENSG00000143569|chr1:154234690-154234690|G/A|missense_variant	REV__UBAP2L|p.D127N|1|0.32|ENSG00000143569|chr1:154234690-154234690|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	637.4971923828125	2	637.321431	1272.62831	-1.0724	-0.00068348	-1.0397	-0.00066262	-2.1121	-0.0013461	637.3211739537096	19.604	0.45642	20.215	19.942	20.399	0.61029					19	8	3	0	0	0	0.93405	1	5952	5952		5.2969	0	1	1635400	+		44292	28938	32383	32648	43221	43221					0.002899608729649117
RNRNLWTKWLP	11	Unmodified	_RNRNLWTKWLP_					0	0	0		ENST00000567435.5_1_15:74744692-74748982:-|nuORF	ENST00000567435.5_1_15:74744692-74748982:-|nuORF	ENST00000567435.5_1_15:74744692-74748982:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	494.69537353515625	3	495.280877	1482.8208	-0.38565	-0.000191	-1.2296	-0.00060902	-1.6153	-0.00080003	495.28006970760697	87.661	0.40329	88.392	88.116	88.519	0.7318					11	7	2	0	0	0	0.99916	1	33351	33351		4.4062	3.3926	1	2916200			44293	13570	32384	32649	43222	43222					0.0987032801094756
RNRRLKKQRHQ	11	Unmodified	_RNRRLKKQRHQ_					0	0	0			REV__HEPH|p.R1137K|1|0.21|ENSG00000089472|chrX:66266605-66266605|G/A|missense_variant	REV__HEPH|p.R1137K|1|0.21|ENSG00000089472|chrX:66266605-66266605|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	507.7095642089844	3	507.309941	1518.90799	-0.6739	-0.00034188	0.1783	9.0453E-05	-0.4956	-0.00025142	507.309893755671	133.06	1.2195	133.23	132.48	133.7	0.16487					71	23	4	0	0	0	0.73896	2	52229	52229;52467		0.36667	0	1	20946000	+		44294	26731	32385	32650	43223;43224	43223					0.16929547005247514
RNRRLPATLSR	11	Unmodified	_RNRRLPATLSR_					0	0	0			REV__ENSG00000138759|ENST00000512123|FRAS1	REV__ENSG00000138759|ENST00000512123|FRAS1	MULTI-MSMS	A375_MHC_IP_R2	2	670.8093872070312	2	670.405101	1338.79565	-0.56931	-0.00038167	1.8753	0.0012572	1.3059	0.00087551	670.4066624433349	142.46	1.4231	142.49	141.47	142.89	0.030731					42	27	3	0	0	0	0.73881	1	55689	55689		0.35063	0	1	2607300	+		44295	19118	32386	32651	43225	43225					0.1398027320840356
RNRRRRRDWFW	11	Unmodified	_RNRRRRRDWFW_					0	0	0		ENST00000361972.8_1_10:7212945-7217999:-|nuORF	ENST00000361972.8_1_10:7212945-7217999:-|nuORF	ENST00000361972.8_1_10:7212945-7217999:-|nuORF	MSMS	A375_MHC_IP_R1	1	568.6851806640625	3	568.645324	1702.91414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.317	1	46.317	45.817	46.817	0								0	0	0	0.16358	1	16243	16243		0.094841	0	1				44296	11054	32387	32652	43226	43226					0.09080065236776136
RNRRRRRDWFW	11	Unmodified	_RNRRRRRDWFW_					0	0	0		ENST00000361972.8_1_10:7212945-7217999:-|nuORF	ENST00000361972.8_1_10:7212945-7217999:-|nuORF	ENST00000361972.8_1_10:7212945-7217999:-|nuORF	MSMS	A375_MHC_IP_R2	2	568.7033081054688	3	568.645324	1702.91414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.038	1	40.812	40.312	41.312	0.77451								0	0	0	0.16358	1	14811	14811		0.094841	0	1				44297	11054	32387	32652	43227	43227					0.09080065236776136
RNRRRRRDWFW	11	Unmodified	_RNRRRRRDWFW_					0	0	0		ENST00000361972.8_1_10:7212945-7217999:-|nuORF	ENST00000361972.8_1_10:7212945-7217999:-|nuORF	ENST00000361972.8_1_10:7212945-7217999:-|nuORF	MSMS	A375_MHC_IP_R2	2	568.6738891601562	3	568.645324	1702.91414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.32	1	54.071	53.571	54.571	0.75105								0	0	0	0.1635	1	20119	20119		0.50596	0.4226	1				44298	11054	32387	32652	43228	43228					0.09080065236776136
RNRRSKYYYYY	11	Unmodified	_RNRRSKYYYYY_					0	0	0			REV__nc|ENSG00000146414|Q149N8-2|SHPRH	REV__nc|ENSG00000146414|Q149N8-2|SHPRH	MSMS	A375_MHC_IP_R2	2	544.6339721679688	3	544.60743	1630.80046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.801	1	87.534	87.034	88.034	0.733								0	0	0	0.16352	1	33011	33011		0.40827	0	1		+		44299	19535	32388	32653	43229	43229					0.01029112560536305
RNRSPAPVRE	10	Unmodified	_RNRSPAPVRE_					0	0	0		ENST00000528273.5_1_17:43509005-43510572:-|nuORF	ENST00000528273.5_1_17:43509005-43510572:-|nuORF	ENST00000528273.5_1_17:43509005-43510572:-|nuORF	MSMS	A375_MHC_IP_R2	2	394.6098937988281	3	394.554777	1180.6425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.266	1	33.003	32.503	33.503	0.73692								0	0	0	0.15136	1	11466	11466		9.7643	0	1				44300	13114	32389	32654	43230	43230					0.05940658091935802
RNTNEYTEGP	10	Unmodified	_RNTNEYTEGP_					0	0	0		ENSG00000136158|ENST00000377104|SPRY2	ENSG00000136158|ENST00000377104|SPRY2	ENSG00000136158|ENST00000377104|SPRY2	MSMS	A375_MHC_IP_R1	1	394.1451721191406	3	394.179153	1179.51563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.355	1	31.355	30.855	31.855	0								0	0	0	0.15332	1	10036	10036		5.7834	1.3773	1				44301	4761	32390	32655	43231	43231					-0.06694732643723
RNTVIVLGVL	10	Unmodified	_RNTVIVLGVL_					0	0	0		ENST00000333082.7_2_20:1147747-1147939:+|nuORF	ENST00000333082.7_2_20:1147747-1147939:+|nuORF	ENST00000333082.7_2_20:1147747-1147939:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	541.9000854492188	2	542.347866	1082.68118	-0.9544	-0.00051762	-0.2873	-0.00015582	-1.2417	-0.00067343	542.3475502308097	147.31	0.22006	147.31	147.22	147.44	0					65	25	3	0	0	0	0.95014	1	56314	56314		0.45834	0.45834	1	490610			44302	10784	32391	32656	43232	43232					0.14314570673764138
RNVIRIIPHH	10	Unmodified	_RNVIRIIPHH_					0	0	0		nc|ENSG00000101981|P00740-2|F9;ENSG00000101981|ENST00000218099|F9	nc|ENSG00000101981|P00740-2|F9	nc|ENSG00000101981|P00740-2|F9	MULTI-SECPEP	A375_MHC_IP_R2	2	419.3223876953125	3	418.922912	1253.74691	-0.071622	-3.0004E-05	-1.2152	-0.00050908	-1.2868	-0.00053908	418.922359299987	44.463	0.30436	45.232	45.035	45.34	0.7691					8	5	2	0	0	0	0.94163	1	16606	16606		6.1918	0.78914	1	2285600			44303	2343	32392	32657	43233	43233					0.1301840463931967
RNVQRPLL	8	Unmodified	_RNVQRPLL_					0	0	0		ENSG00000008853|ENST00000251822|RHOBTB2;nc|ENSG00000008853|Q9BYZ6-3|RHOBTB2;nc|ENSG00000008853|Q9BYZ6-2|RHOBTB2	ENSG00000008853|ENST00000251822|RHOBTB2	ENSG00000008853|ENST00000251822|RHOBTB2	MULTI-MSMS	A375_MHC_IP_R1	1	498.7082824707031	2	498.309075	994.603597	-0.73716	-0.00036733	-0.77489	-0.00038613	-1.512	-0.00075347	498.30858534643124	143.71	0.25076	143.71	143.58	143.84	0					7	4	2	0	0	0	0.7779	1	55135	55135		2.5775	0	1	1930000			44304	964	32393	32658	43234	43234					0.1060797752822964
RNVVHSEIII	10	Unmodified	_RNVVHSEIII_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	MSMS	A375_MHC_IP_R1	1	393.9400939941406	3	393.899662	1178.67716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.777	1	34.777	34.277	35.277	0								0	0	0	0.15324	1	11496	11496		10.315	0.77126	1				44305	7316	32394	32659	43235	43235					0.09496481180053706
RNWRILFVMRR	11	Unmodified	_RNWRILFVMRR_					0	0	0		ENST00000502537.1_1_4:86863224-86863332:+|nuORF	ENST00000502537.1_1_4:86863224-86863332:+|nuORF	ENST00000502537.1_1_4:86863224-86863332:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	774.8506469726562	2	773.948621	1545.88269	-0.75389	-0.00058347	0.39423	0.00030512	-0.35965	-0.00027835	773.949083439169	143.08	0.4025	143.11	142.94	143.34	0.030731					16	7	3	0	0	0	0.73902	1	55957	55957		0.30703	0.30703	1	1008700			44306	12791	32395	32660	43236	43236					0.13158356158442075
RNWRILFVMRR	11	Unmodified	_RNWRILFVMRR_					0	0	0		ENST00000502537.1_1_4:86863224-86863332:+|nuORF	ENST00000502537.1_1_4:86863224-86863332:+|nuORF	ENST00000502537.1_1_4:86863224-86863332:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	773.948621	1545.88269	-0.82496	-0.00063848	0.6653	0.00051491	-0.15966	-0.00012357	774.4507931498187	143.12	0.45305	143.12	142.79	143.24	0	0.0048565	0.00017683	NaN	0.30703	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1188100			44307	12791	32395	32660							0.13158356158442075
RNWSDTRIWWM	11	Unmodified	_RNWSDTRIWWM_					0	0	0			REV__ENST00000349714.9_1_20:33971865-33981976:-|nuORF	REV__ENST00000349714.9_1_20:33971865-33981976:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	777.3038330078125	2	775.869702	1549.72485	-0.41295	-0.0003204	0.45411	0.00035233	0.041158	3.1933E-05	775.8699778518788	102.2	0.60732	102.2	101.9	102.51	0					23	11	3	0	0	0	0.73809	1	37483	37483		1.1933	0	1	3877300	+		44308	23793	32396	32661	43237	43237					-0.028021878914387344
RNYQRYYDRYR	11	Unmodified	_RNYQRYYDRYR_					0	0	0			REV__ENSG00000214753|ENST00000301785|HNRNPUL2	REV__ENSG00000214753|ENST00000301785|HNRNPUL2	MSMS	A375_MHC_IP_R1	1	551.7007446289062	3	551.6062	1651.79677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.249	1	96.249	95.749	96.749	0								0	0	0	0.16354	1	35374	35374		0.08335	0.026723	1		+		44309	22659	32397	32662	43238	43238					-0.003055572133689566
RNYTKQRRKL	10	Unmodified	_RNYTKQRRKL_					0	0	0			REV__PEG3|p.K681R|1|0.23|ENSG00000198300|chr19:56816400-56816400|T/C|missense_variant	REV__PEG3|p.K681R|1|0.23|ENSG00000198300|chr19:56816400-56816400|T/C|missense_variant	MSMS	A375_MHC_IP_R2	2	681.6275024414062	2	681.907476	1361.8004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.411	1	94.152	93.652	94.652	0.74141								0	0	0	0.15596	1	35512	35512		1.4819	0.15237	1		+		44310	27764	32398	32663	43239	43239					0.13397157351141686
RNYYRKIGY	9	Unmodified	_RNYYRKIGY_					0	0	0		nc|ENSG00000134014|Q9H9T3-5|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;ENSG00000134014|ENST00000256398|ELP3;nc|ENSG00000134014|Q9H9T3-4|ELP3;ENST00000523357.5_2_8:28040756-28047239:+|nuORF	nc|ENSG00000134014|Q9H9T3-5|ELP3	nc|ENSG00000134014|Q9H9T3-5|ELP3	MULTI-MSMS	A375_MHC_IP_R2	2	411.9557800292969	3	411.556007	1231.64619	-0.31372	-0.00012911	-0.046176	-1.9004E-05	-0.35989	-0.00014812	411.5559352918669	20.513	0.76383	21.123	20.752	21.516	0.61029					30	14	3	0	0	0	0.018546	1	6370	6370		76.825	56.244	1	5211000			44311	4542	32399	32664	43240	43240					0.03963327865790234
RPADRPLAL	9	Unmodified	_RPADRPLAL_					0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	505.2008056640625	2	504.801083	1007.58761	-0.44997	-0.00022715	0.19469	9.8282E-05	-0.25528	-0.00012886	504.8010670745678	40.096	0.71398	40.096	39.845	40.559	0					26	13	3	0	0	0	0.65527	1	13754	13754		22.736	3.4793	1	7601000			44312	13855	32400	32665	43241	43241					0.0841227129130857
RPALARVLRLR	11	Unmodified	_RPALARVLRLR_					0	0	0		ENST00000332408.8_1_15:49255483-49255573:-|nuORF	ENST00000332408.8_1_15:49255483-49255573:-|nuORF	ENST00000332408.8_1_15:49255483-49255573:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	441.6971740722656	3	440.961478	1319.86261	-0.29519	-0.00013017	2.4151	0.001065	2.1199	0.00093479	441.2975178380254	19.216	0.080004	19.216	19.15	19.23	0					13	9	2	0	0	0	1.0015	1	4637	4637		0.094841	0	1	146260			44313	10777	32401	32666	43242	43242					0.21546928490147366
RPCCCCPCCC	10	Unmodified	_RPCCCCPCCC_					0	0	0		KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	KRTAP4-6|p.R166C|1|0.12|ENSG00000198090|chr17:41139992-41139992|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	545.7156982421875	2	545.648024	1089.28149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.77	1	131.77	131.27	132.27	0								0	0	0	0.15629	1	50806	50806		0.40072	0	1				44314	14240	32402	32667	43243	43243					-0.2595747245909479
RPCRKLRW	8	Unmodified	_RPCRKLRW_					0	0	0		nc|ENSG00000130052|Q92502|STARD8;ENSG00000130052|ENST00000374599|STARD8	nc|ENSG00000130052|Q92502|STARD8	nc|ENSG00000130052|Q92502|STARD8	MSMS	A375_MHC_IP_R1	1	372.2648620605469	3	372.218672	1113.63419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.567	1	35.567	35.067	36.067	0								0	0	0	0.16876	1	11838	11838		6.7232	0.53132	1				44315	4220	32403	32668	43244	43244					0.08191432641615393
RPCRRWWSRE	10	Unmodified	_RPCRRWWSRE_					0	0	0		ENST00000340305.9_1_1:9662821-9663067:+|nuORF	ENST00000340305.9_1_1:9662821-9663067:+|nuORF	ENST00000340305.9_1_1:9662821-9663067:+|nuORF	MSMS	A375_MHC_IP_R1	1	716.7611083984375	2	716.362379	1430.7102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.66	1	142.66	142.16	143.16	0								0	0	0	0.15596	1	54738	54738		1.4819	0	1				44316	10855	32404	32669	43245	43245					0.012077847510909123
RPDIDKILL	9	Unmodified	_RPDIDKILL_					0	0	0		ENSG00000149782|ENST00000279230|PLCB3;nc|ENSG00000149782|Q01970-2|PLCB3	ENSG00000149782|ENST00000279230|PLCB3	ENSG00000149782|ENST00000279230|PLCB3	MULTI-MSMS	A375_MHC_IP_R2	2	361.949951171875	3	361.557125	1081.64954	-0.078504	-2.8384E-05	-0.14152	-5.1169E-05	-0.22003	-7.9553E-05	361.55695569097986	68.609	0.70919	69.344	69.07	69.779	0.73511					19	13	2	0	0	0	0.73141	1	25899	25899		4.1895	0.86986	1	1433800			44317	5830	32405	32670	43246	43246					0.1119857791979939
RPDLAEEFF	9	Unmodified	_RPDLAEEFF_					0	0	0			REV__tr|U7T3Q6|U7T3Q6_FUSNUDioldehydratasereactivasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00496PE=4SV=1	REV__tr|U7T3Q6|U7T3Q6_FUSNUDioldehydratasereactivasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00496PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	375.5856018066406	3	375.185468	1122.53457	-0.28277	-0.00010609	0.08567	3.2142E-05	-0.1971	-7.3948E-05	375.18543032338835	29.562	0.70699	30.261	30.083	30.79	0.69872					24	13	2	0	0	0	0.74169	1	10337	10337		16.149	0.41048	1	8829800	+		44318	28784	32406	32671	43247	43247					-0.021791512820072967
RPDLGKLKKI	10	Unmodified	_RPDLGKLKKI_					0	0	0		ENST00000482601.1_1_2:144885858-144903287:-|nuORF;nc|ENSG00000121964|Q4AE62-3|GTDC1;ENST00000491448.5_1_2:144764747-144969145:-|nuORF;nc|ENSG00000121964|Q4AE62-2|GTDC1;nc|ENSG00000121964|Q4AE62-4|GTDC1;nc|ENSG00000121964|Q4AE62-5|GTDC1;ENSG00000121964|ENST00000682281|GTDC1	ENST00000482601.1_1_2:144885858-144903287:-|nuORF	ENST00000482601.1_1_2:144885858-144903287:-|nuORF	MSMS	A375_MHC_IP_R1	1	584.410888671875	2	584.38224	1166.74993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.35	1	141.35	140.85	141.85	0								0	0	0	0.15596	1	54258	54258		1.4819	0.95714	1				44319	3753	32407	32672	43248	43248					0.17322234973448758
RPDRAKMREGL	11	Unmodified	_RPDRAKMREGL_					0	0	0			REV__ENST00000607005.5_1_5:477473-477927:+|nuORF	REV__ENST00000607005.5_1_5:477473-477927:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	444.3132629394531	3	443.578705	1327.71429	-0.27852	-0.00012354	0.27283	0.00012102	-0.0056883	-2.5232E-06	443.57891437886343	85.653	0.50838	85.653	85.362	85.87	0					24	9	3	0	0	0	0.66366	1	31402	31402		11.065	2.3135	1	2844800	+		44320	26543	32408	32673	43249	43249					0.06353829454155857
RPDRAKMREGL	11	Unmodified	_RPDRAKMREGL_					0	0	0			REV__ENST00000607005.5_1_5:477473-477927:+|nuORF	REV__ENST00000607005.5_1_5:477473-477927:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	443.578705	1327.71429	-0.27852	-0.00012354	0.27283	0.00012102	-0.0056883	-2.5232E-06	443.57891437886343	85.653	0.50838	85.653	85.362	85.87	0	0.1365	-4.6259E-05	NaN	11.065	24	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2844800	+		44321	26543	32408	32673							0.06353829454155857
RPDRAKMREGL	11	Unmodified	_RPDRAKMREGL_					0	0	0			REV__ENST00000607005.5_1_5:477473-477927:+|nuORF	REV__ENST00000607005.5_1_5:477473-477927:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	443.578705	1327.71429	-0.25376	-0.00011256	0.35981	0.00015961	0.10605	4.7042E-05	443.57892342407393	84.644	0.50541	85.38	85.069	85.574	0.73601	-0.1365	6.9496E-05	NaN	11.065	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1951000	+		44322	26543	32408	32673							0.06353829454155857
RPDRRCSR	8	Unmodified	_RPDRRCSR_					0	0	0			REV__ENST00000400532.5_1_21:27012030-27056198:+|nuORF	REV__ENST00000400532.5_1_21:27012030-27056198:+|nuORF	MSMS	A375_MHC_IP_R2	2	523.211181640625	2	523.275241	1044.53593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.69	1	132.86	132.36	133.36	0.16487								0	0	0	0.16876	1	52197	52197		4.3292	0	1		+		44323	24404	32409	32674	43250	43250					0.01544204325773535
RPDVNVKA	8	Unmodified	_RPDVNVKA_					0	0	0			REV__CHRND|p.R219K|1|0.15|ENSG00000135902|chr2:232529975-232529975|G/A|missense_variant	REV__CHRND|p.R219K|1|0.15|ENSG00000135902|chr2:232529975-232529975|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	450.1893310546875	2	449.758884	897.503215	-0.69357	-0.00031194	0.17526	7.8826E-05	-0.5183	-0.00023311	449.75892318711067	28.407	0.60944	29.086	28.604	29.214	0.67857					18	11	2	0	0	0	0.972	1	9728	9728		8.7454	1.4562	1	7216100	+		44324	15777	32410	32675	43251	43251					0.05036320474562217
RPEDSELSI	9	Unmodified	_RPEDSELSI_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-MSMS	A375_MHC_IP_R2	2	524.2435913085938	2	523.261653	1044.50875	-0.46462	-0.00024312	1.321	0.00069125	0.85643	0.00044814	523.2639531889496	92.873	1.4712	93.612	93.19	94.661	0.73902					43	28	3	0	0	0	0.55818	1	35651	35651		16.942	0	1	1462700			44325	3923	32411	32676	43252	43252					-0.011720455242766548
RPEHHSSF	8	Unmodified	_RPEHHSSF_					0	0	0			REV__ENSG00000184845|ENST00000393752|DRD1	REV__ENSG00000184845|ENST00000393752|DRD1	MULTI-SECPEP	A375_MHC_IP_R1	1	498.2296447753906	2	498.73594	995.457327	-0.47662	-0.00023771	-0.96867	-0.00048311	-1.4453	-0.00072082	498.7353023393164	39.504	0.40555	39.504	39.289	39.694	0					12	7	2	0	0	0	0.95423	1	13553	13553		12.532	3.1484	1	1497400	+		44326	21841	32412	32677	43253	43253					-0.04058324707659722
RPERWLRKGDL	11	Unmodified	_RPERWLRKGDL_					0	0	0		nc|ENSG00000186684|Q4G0S4-1|CYP27C1;ENSG00000186684|ENST00000664447|CYP27C1;nc|ENSG00000186684|Q4G0S4|CYP27C1	nc|ENSG00000186684|Q4G0S4-1|CYP27C1	nc|ENSG00000186684|Q4G0S4-1|CYP27C1	MSMS	A375_MHC_IP_R1	1	476.0076904296875	3	475.940632	1424.80007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.828	1	40.828	40.328	41.328	0								0	0	0	0.16099	1	14059	14059		13.519	9.1125	1				44327	8771	32413	32678	43254	43254					0.10465737631307093
RPFLISEQTL	10	Unmodified	_RPFLISEQTL_					0	0	0			REV__SPG11|p.L867F|1|0.34|ENSG00000104133|chr15:44621780-44621780|G/A|missense_variant	REV__SPG11|p.L867F|1|0.34|ENSG00000104133|chr15:44621780-44621780|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	402.5798645019531	3	401.895917	1202.66592	0.030513	1.2263E-05	-1.8742	-0.00075322	-1.8437	-0.00074096	402.229267207223	45.338	0.25227	45.338	45.132	45.384	0					6	4	2	0	0	0	0.93041	1	15826	15826		5.0475	0.3316	1	307380	+		44328	28031	32414	32679	43255	43255					0.07269659085909552
RPFTIPYL	8	Unmodified	_RPFTIPYL_					0	0	0		ENSG00000137413|ENST00000372977|TAF8;nc|ENSG00000137413|Q7Z7C8-2|TAF8;nc|ENSG00000137413|Q7Z7C8-4|TAF8	ENSG00000137413|ENST00000372977|TAF8	ENSG00000137413|ENST00000372977|TAF8	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1900634765625	2	503.789653	1005.56475	-0.60307	-0.00030382	-0.15318	-7.7171E-05	-0.75626	-0.00038099	503.7894595642663	101.77	0.76067	102.54	102.16	102.92	0.76428					32	14	4	0	0	0	0.9187	1	38531	38531		25.399	25.399	1	4120400			44329	4881	32415	32680	43256	43256					0.0621925217384387
RPFTIPYL	8	Unmodified	_RPFTIPYL_					0	0	0		ENSG00000137413|ENST00000372977|TAF8;nc|ENSG00000137413|Q7Z7C8-2|TAF8;nc|ENSG00000137413|Q7Z7C8-4|TAF8	ENSG00000137413|ENST00000372977|TAF8	ENSG00000137413|ENST00000372977|TAF8	MULTI-MATCH	A375_MHC_IP_R1	1		2	503.789653	1005.56475	-0.32785	-0.00016517	-0.30471	-0.00015351	-0.63256	-0.00031868	503.78943297750754	102.69	0.66026	102.69	102.4	103.06	0	0.075454	-9.019E-05	NaN	25.399	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3888300			44330	4881	32415	32680							0.0621925217384387
RPFVIPFL	8	Unmodified	_RPFVIPFL_					0	0	0		nc|ENSG00000078699|O43439-2|CBFA2T2;ENSG00000078699|ENST00000342704|CBFA2T2;nc|ENSG00000078699|O43439|CBFA2T2;nc|ENSG00000078699|O43439-4|CBFA2T2;ENST00000523290.5_1_8:93023196-93107415:-|nuORF;nc|ENSG00000078699|O43439-3|CBFA2T2;nc|ENSG00000079102|Q06455-6|RUNX1T1;nc|ENSG00000079102|Q06455-5|RUNX1T1;nc|ENSG00000129993|O75081-2|CBFA2T3;nc|ENSG00000079102|Q06455-4|RUNX1T1;nc|ENSG00000129993|O75081-4|CBFA2T3;nc|ENSG00000079102|Q06455-2|RUNX1T1;nc|ENSG00000079102|Q06455|RUNX1T1;nc|ENSG00000079102|Q06455-3|RUNX1T1;ENSG00000129993|ENST00000268679|CBFA2T3;ENSG00000079102|ENST00000436581|RUNX1T1	nc|ENSG00000078699|O43439-2|CBFA2T2	nc|ENSG00000078699|O43439-2|CBFA2T2	MULTI-MSMS	A375_MHC_IP_R1	1	495.20172119140625	2	494.802563	987.590573	0.071524	3.539E-05	-1.0183	-0.00050385	-0.94676	-0.00046846	494.80186140732445	126.83	0.20369	126.83	126.71	126.91	0					7	3	3	0	0	0	0.7338	1	48540	48540		24.674	5.2349	1	8432200			44331	1680	32416	32681	43257	43257					0.09628146416127947
RPFVIPFL	8	Unmodified	_RPFVIPFL_					0	0	0		nc|ENSG00000078699|O43439-2|CBFA2T2;ENSG00000078699|ENST00000342704|CBFA2T2;nc|ENSG00000078699|O43439|CBFA2T2;nc|ENSG00000078699|O43439-4|CBFA2T2;ENST00000523290.5_1_8:93023196-93107415:-|nuORF;nc|ENSG00000078699|O43439-3|CBFA2T2;nc|ENSG00000079102|Q06455-6|RUNX1T1;nc|ENSG00000079102|Q06455-5|RUNX1T1;nc|ENSG00000129993|O75081-2|CBFA2T3;nc|ENSG00000079102|Q06455-4|RUNX1T1;nc|ENSG00000129993|O75081-4|CBFA2T3;nc|ENSG00000079102|Q06455-2|RUNX1T1;nc|ENSG00000079102|Q06455|RUNX1T1;nc|ENSG00000079102|Q06455-3|RUNX1T1;ENSG00000129993|ENST00000268679|CBFA2T3;ENSG00000079102|ENST00000436581|RUNX1T1	nc|ENSG00000078699|O43439-2|CBFA2T2	nc|ENSG00000078699|O43439-2|CBFA2T2	MULTI-MATCH	A375_MHC_IP_R2	2		2	494.802563	987.590573	-0.43702	-0.00021624	0.96281	0.0004764	0.52578	0.00026016	494.8030110982898	126.41	0.19998	126.71	126.58	126.78	0.2951	-0.062365	0.0011737	NaN	24.674	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7035200			44332	1680	32416	32681							0.09628146416127947
RPGFFTLLL	9	Unmodified	_RPGFFTLLL_					0	0	0		MOGAT2|p.S198F|1|0.11|ENSG00000166391|chr11:75728087-75728087|C/T|missense_variant	MOGAT2|p.S198F|1|0.11|ENSG00000166391|chr11:75728087-75728087|C/T|missense_variant	MOGAT2|p.S198F|1|0.11|ENSG00000166391|chr11:75728087-75728087|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	355.94927978515625	3	355.21481	1062.6226	-0.010586	-3.7602E-06	-0.085901	-3.0513E-05	-0.096487	-3.4274E-05	355.21467604297453	55.375	0.66275	55.375	55.075	55.738	0					17	12	2	0	0	0	0.75466	1	19867	19867		2.4985	2.4985	1	1754400			44333	14395	32417	32682	43258	43258					0.0937951409928246
RPGLEPRLF	9	Unmodified	_RPGLEPRLF_					0	0	0			REV__nc|ENSG00000130939|O95155-3|UBE4B	REV__nc|ENSG00000130939|O95155-3|UBE4B	MULTI-SECPEP	A375_MHC_IP_R1	1	543.198486328125	2	542.816733	1083.61891	-0.63457	-0.00034445	-0.0079431	-4.3116E-06	-0.64251	-0.00034876	542.8167219688311	64.505	0.71175	64.505	64.191	64.903	0					31	13	3	0	0	0	0.65623	1	23330	23330		19.257	12.534	1	8091200	+		44334	18573	32418	32683	43259	43259					0.08044844325399936
RPGRPRLFL	9	Unmodified	_RPGRPRLFL_					0	0	0			REV__ENST00000458350.7_1_5:81267901-81272033:+|nuORF	REV__ENST00000458350.7_1_5:81267901-81272033:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	371.6330871582031	3	371.233087	1110.67743	0.25167	9.343E-05	-0.32526	-0.00012075	-0.07359	-2.7319E-05	371.23296594778367	27.387	0.50598	27.387	27.128	27.634	0					19	9	3	0	0	0	0.7675	1	8307	8307		0.96228	0	1	3147300	+		44335	23818	32419	32684	43260	43260					0.12651945690549837
RPGRPRLFL	9	Unmodified	_RPGRPRLFL_					0	0	0			REV__ENST00000458350.7_1_5:81267901-81272033:+|nuORF	REV__ENST00000458350.7_1_5:81267901-81272033:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	371.233087	1110.67743	0.016224	6.023E-06	-0.30371	-0.00011275	-0.28748	-0.00010672	371.23300574275703	26.328	0.50782	26.988	26.805	27.313	0.65992	-0.19922	1.5257E-05	NaN	0.96228	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2668400	+		44336	23818	32419	32684							0.12651945690549837
RPGRPRRPRRQ	11	Unmodified	_RPGRPRRPRRQ_					0	0	0		ENST00000296350.9_1_3:196729451-196730141:-|nuORF	ENST00000296350.9_1_3:196729451-196730141:-|nuORF	ENST00000296350.9_1_3:196729451-196730141:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	478.35870361328125	3	477.959131	1430.85556	-0.71763	-0.000343	0.23458	0.00011212	-0.48305	-0.00023088	477.9591191770441	132.12	1.0096	132.12	131.53	132.54	0					68	19	4	0	0	0	0.73902	2	50782	50782;51018		0.08335	0	1	17131000			44337	10507	32420	32685	43261;43262	43261					0.15737008662290464
RPGRPRRPRRQ	11	Unmodified	_RPGRPRRPRRQ_					0	0	0		ENST00000296350.9_1_3:196729451-196730141:-|nuORF	ENST00000296350.9_1_3:196729451-196730141:-|nuORF	ENST00000296350.9_1_3:196729451-196730141:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	478.35870361328125	3	477.959131	1430.85556	-0.73096	-0.00034937	0.4485	0.00021437	-0.28246	-0.000135	477.9592541327554	132.93	2.2387	132.93	132.54	134.78	0					127	43	5	0	0	0	0.73902	2	51235	51235;51463		0.08335	0	1	54738000			44338	10507	32420	32685	43263;43264	43263					0.15737008662290464
RPGRPRRPRRQ	11	Unmodified	_RPGRPRRPRRQ_					0	0	0		ENST00000296350.9_1_3:196729451-196730141:-|nuORF	ENST00000296350.9_1_3:196729451-196730141:-|nuORF	ENST00000296350.9_1_3:196729451-196730141:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	478.3588562011719	3	477.959131	1430.85556	-0.51204	-0.00024474	0.21814	0.00010426	-0.2939	-0.00014047	477.9591145737548	132	1.1704	132.19	131.49	132.66	0.18953					70	22	4	0	0	0	0.73902	1	51985	51985		0.08335	0	1	20183000			44339	10507	32420	32685	43265	43265					0.15737008662290464
RPGRPRRPRRQ	11	Unmodified	_RPGRPRRPRRQ_					0	0	0		ENST00000296350.9_1_3:196729451-196730141:-|nuORF	ENST00000296350.9_1_3:196729451-196730141:-|nuORF	ENST00000296350.9_1_3:196729451-196730141:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	478.35882568359375	3	477.959131	1430.85556	-0.48213	-0.00023044	0.1297	6.1989E-05	-0.35243	-0.00016845	477.95907547108607	132.86	1.8322	133.02	132.53	134.37	0.16487					113	35	5	0	0	0	0.73809	3	52678	52205;52425;52678		0.40827	0.40827	1	43805000			44340	10507	32420	32685	43266;43267;43268	43268					0.15737008662290464
RPGRPRRPRRQ	11	Unmodified	_RPGRPRRPRRQ_					0	0	0		ENST00000296350.9_1_3:196729451-196730141:-|nuORF	ENST00000296350.9_1_3:196729451-196730141:-|nuORF	ENST00000296350.9_1_3:196729451-196730141:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	477.959131	1430.85556	-0.73096	-0.00034937	0.4485	0.00021437	-0.28246	-0.000135	477.9592541327554	132.93	2.2387	132.93	132.54	134.78	0	-0.048899	0.00023669	NaN	0.40827	127	43	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54738000			44341	10507	32420	32685							0.15737008662290464
RPGRPRRPRRR	11	Unmodified	_RPGRPRRPRRR_					0	0	0		ENST00000528056.5_1_Y:7142246-7142408:+|nuORF	ENST00000528056.5_1_Y:7142246-7142408:+|nuORF	ENST00000528056.5_1_Y:7142246-7142408:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	487.7069091796875	3	487.306642	1458.8981	-0.39777	-0.00019384	0.59942	0.0002921	0.20165	9.8265E-05	487.3067550545859	149.13	2.2382	149.15	147.77	150.01	0.018707					150	85	3	0	0	0	0.73925	1	57829	57829		0.08335	0	1	335890			44342	13113	32421	32686	43269	43269					0.1870040379051261
RPGRPRRPRRR	11	Unmodified	_RPGRPRRPRRR_					0	0	0		ENST00000528056.5_1_Y:7142246-7142408:+|nuORF	ENST00000528056.5_1_Y:7142246-7142408:+|nuORF	ENST00000528056.5_1_Y:7142246-7142408:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	487.306642	1458.8981	-0.61541	-0.00029989	0.81827	0.00039875	0.20287	9.8858E-05	487.30687347527265	149.08	2.1639	149.08	147.76	149.93	0	-0.036911	0.00016072	NaN	0.08335	135	65	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	383240			44343	13113	32421	32686							0.1870040379051261
RPHAPGRP	8	Unmodified	_RPHAPGRP_					0	0	0		ENSG00000108963|ENST00000263083|DPH1;nc|ENSG00000108963|Q9BZG8-1|DPH1;nc|ENSG00000108963|Q9BZG8-2|DPH1	ENSG00000108963|ENST00000263083|DPH1	ENSG00000108963|ENST00000263083|DPH1	MULTI-MSMS	A375_MHC_IP_R2	2	444.6520080566406	2	444.25156	886.488568	-0.18428	-8.1868E-05	-0.13797	-6.1295E-05	-0.32226	-0.00014316	444.25217459318253	143.03	0.30122	143.06	142.94	143.24	0.030731					9	5	3	0	0	0	0.7779	1	55914	55914		2.5775	0	1	2440700			44344	2848	32422	32687	43270	43270					0.04078293117083831
RPIVRRGLKRK	11	Unmodified	_RPIVRRGLKRK_					0	0	0			REV__tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1	REV__tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1	MSMS	A375_MHC_IP_R1	1	689.9794311523438	2	689.965129	1377.9157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.81	1	104.81	104.31	105.31	0								0	0	0	0.16354	1	38481	38481		0.30703	0	1		+		44345	28888	32423	32688	43271	43271					0.2418630627278162
RPKPLLLKLL	10	Unmodified	_RPKPLLLKLL_					0	0	0		nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;nc|ENSG00000135679|Q00987-7|MDM2;ENST00000493419.1_1_12:69202221-69210726:+|nuORF;nc|ENSG00000135679|Q00987-5|MDM2;nc|ENSG00000135679|Q00987-9|MDM2	nc|ENSG00000135679|Q00987-10|MDM2	nc|ENSG00000135679|Q00987-10|MDM2	MSMS	A375_MHC_IP_R2	2	596.0119018554688	2	595.921001	1189.82745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.319	1	77.059	76.559	77.559	0.74052								0	0	0	0.15642	1	28974	28974		0	0	1				44346	4705	32424	32689	43272	43272					0.24012872909656835
RPKSNNLPE	9	Unmodified	_RPKSNNLPE_					0	0	0		OR10A2|p.S254L|1|0.07|ENSG00000170790|chr11:6870515-6870515|C/T|missense_variant	OR10A2|p.S254L|1|0.07|ENSG00000170790|chr11:6870515-6870515|C/T|missense_variant	OR10A2|p.S254L|1|0.07|ENSG00000170790|chr11:6870515-6870515|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	527.68408203125	2	527.78563	1053.55671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.41	1	141.46	140.96	141.96	0.04216								0	0	0	0.1535	1	55314	55314		15.847	0	1				44347	15057	32425	32690	43273	43273					0.032070731863996116
RPLAFGQGRGP	11	Unmodified	_RPLAFGQGRGP_					0	0	0		ENSG00000146700|ENST00000275560|SSC4D;nc|ENSG00000146700|Q8WTU2-2|SSC4D	ENSG00000146700|ENST00000275560|SSC4D	ENSG00000146700|ENST00000275560|SSC4D	MULTI-SECPEP	A375_MHC_IP_R2	2	386.585693359375	3	385.884235	1154.63087	-0.15559	-6.004E-05	0.079133	3.0536E-05	-0.076457	-2.9504E-05	386.21835680367604	30.824	0.35281	31.542	31.417	31.77	0.71857					8	6	2	0	0	0	0.98748	1	10929	10929		4.4062	0	1	1121900			44348	5631	32426	32691	43274	43274					0.05974461068626624
RPLHWAIY	8	Unmodified	_RPLHWAIY_					0	0	0		ENST00000394613.3_1_11:63342419-63381578:-|nuORF	ENST00000394613.3_1_11:63342419-63381578:-|nuORF	ENST00000394613.3_1_11:63342419-63381578:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	352.9309387207031	3	352.531021	1054.57123	-0.14639	-5.1607E-05	0.36734	0.0001295	0.22095	7.7892E-05	352.5310981111107	58.252	0.81195	58.252	57.974	58.786	0					43	15	4	0	0	0	0.75322	1	20887	20887		14.838	6.6827	1	21545000			44349	11455	32427	32692	43275	43275					0.046131901252238094
RPLHWAIY	8	Unmodified	_RPLHWAIY_					0	0	0		ENST00000394613.3_1_11:63342419-63381578:-|nuORF	ENST00000394613.3_1_11:63342419-63381578:-|nuORF	ENST00000394613.3_1_11:63342419-63381578:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	352.93060302734375	3	352.531021	1054.57123	-0.59296	-0.00020904	0.1126	3.9694E-05	-0.48036	-0.00016934	352.53102533115134	57.346	0.81611	58.095	57.762	58.578	0.74894					37	15	3	0	0	0	0.75322	1	21633	21633		14.838	1.7958	1	22796000			44350	11455	32427	32692	43276	43276					0.046131901252238094
RPLKKILLRKV	11	Unmodified	_RPLKKILLRKV_					0	0	0			REV__nc|ENSG00000114374|O00507-2|USP9Y	REV__nc|ENSG00000114374|O00507-2|USP9Y	MSMS	A375_MHC_IP_R2	2	682.4690551757812	2	682.484831	1362.95511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.045	1	46.81	46.31	47.31	0.76519								0	0	0	0.1636	1	17233	17233		0	0	1		+		44351	17822	32428	32693	43277	43277					0.2881501350366307
RPLKRLLNGQ	10	Unmodified	_RPLKRLLNGQ_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-6|OBSCN;REV__OBSCN|p.R4794Afs*50|1|0.26|ENSG00000154358|chr1:228319130-228319130|C/-|frameshift_variant	REV__nc|ENSG00000154358|Q5VST9-6|OBSCN	MULTI-MSMS	A375_MHC_IP_R1	1	598.7430419921875	2	597.875114	1193.73567	-0.72939	-0.00043608	-0.58531	-0.00034994	-1.3147	-0.00078603	597.8746030715217	138.89	0.60522	138.89	138.76	139.37	0					26	11	4	0	0	0	0.72416	1	53456	53456		1.4819	0	1	4378300	+		44352	27298;27637	32429	32694	43278	43278					0.14655582545174184
RPLKRLLNGQ	10	Unmodified	_RPLKRLLNGQ_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-6|OBSCN;REV__OBSCN|p.R4794Afs*50|1|0.26|ENSG00000154358|chr1:228319130-228319130|C/-|frameshift_variant	REV__nc|ENSG00000154358|Q5VST9-6|OBSCN	MULTI-MATCH	A375_MHC_IP_R2	2		2	597.875114	1193.73567	-0.35984	-0.00021514	-0.76409	-0.00045683	-1.1239	-0.00067197	597.8745057647029	138.87	0.70105	138.93	138.75	139.45	0.059906	0.018421	-7.9143E-05	NaN	1.4819	25	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4803800	+		44353	27298;27637	32429	32694							0.14655582545174184
RPLLAALRLRL	11	Unmodified	_RPLLAALRLRL_					0	0	0		ENST00000558265.5_2_14:103800768-103802173:+|nuORF;ENST00000558316.5_2_14:103800804-103802377:+|nuORF;ENST00000560763.5_2_14:103800597-103802258:+|nuORF	ENST00000558265.5_2_14:103800768-103802173:+|nuORF	ENST00000558265.5_2_14:103800768-103802173:+|nuORF	MSMS	A375_MHC_IP_R2	2	646.836669921875	2	646.437881	1290.86121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.66	1	144.69	144.19	145.19	0.024414								0	0	0	0.1636	1	56500	56500		0	0	1				44354	13465	32430	32695	43279	43279					0.22741294401384948
RPLLKKWLKEV	11	Unmodified	_RPLLKKWLKEV_					0	0	0		ENSG00000248483|ENST00000606183|POU5F2	ENSG00000248483|ENST00000606183|POU5F2	ENSG00000248483|ENST00000606183|POU5F2	MSMS	A375_MHC_IP_R2	2	705.8563232421875	2	705.453197	1408.89184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.7	1	144.73	144.23	145.23	0.022827								0	0	0	0.16355	1	56515	56515		0.26902	0.26902	1				44355	9834	32431	32696	43280	43280					0.2037502799576032
RPLLVLRE	8	Unmodified	_RPLLVLRE_					0	0	0		ENST00000394906.6_1_17:27206788-27206950:-|nuORF	ENST00000394906.6_1_17:27206788-27206950:-|nuORF	ENST00000394906.6_1_17:27206788-27206950:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	498.7211608886719	2	498.321651	994.62875	-0.73713	-0.00036733	0.2888	0.00014391	-0.44834	-0.00022342	498.32158928169287	147.46	0.60487	147.46	147.18	147.78	0					109	63	3	0	0	0	0.77842	1	56341	56341		0.69038	0	1	655710			44356	11460	32432	32697	43281	43281					0.13122032330807087
RPLLVLRE	8	Unmodified	_RPLLVLRE_					0	0	0		ENST00000394906.6_1_17:27206788-27206950:-|nuORF	ENST00000394906.6_1_17:27206788-27206950:-|nuORF	ENST00000394906.6_1_17:27206788-27206950:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	498.72137451171875	2	498.321651	994.62875	-0.33178	-0.00016533	0.29763	0.00014832	-0.034147	-1.7016E-05	498.32155291498157	147.49	0.89621	147.51	147.28	148.18	0.019913					121	71	3	0	0	0	0.972	1	57323	57323		2.5775	0	1	591890			44357	11460	32432	32697	43282	43282					0.13122032330807087
RPLQRKQLYSF	11	Unmodified	_RPLQRKQLYSF_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-MSMS	A375_MHC_IP_R1	1	480.01055908203125	3	479.277132	1434.80957	-0.67822	-0.00032506	-0.080135	-3.8407E-05	-0.75836	-0.00036346	479.27727935356455	132.09	1.0605	132.09	131.53	132.59	0					59	20	4	0	0	0	0.73818	1	50816	50816		1.1098	0.6038	1	17082000			44358	6444	32433	32698	43283	43283					0.10955505916831498
RPLVRKVAPG	10	Unmodified	_RPLVRKVAPG_					0	0	0		ENSG00000158555|ENST00000336898|GDPD5;nc|ENSG00000158555|Q8WTR4-5|GDPD5;nc|ENSG00000158555|Q8WTR4-4|GDPD5;nc|ENSG00000158555|Q8WTR4-3|GDPD5;nc|ENSG00000158555|Q8WTR4-2|GDPD5	ENSG00000158555|ENST00000336898|GDPD5	ENSG00000158555|ENST00000336898|GDPD5	MULTI-MSMS	A375_MHC_IP_R1	1	364.9231262207031	3	364.904859	1091.69275	0.1143	4.1707E-05	-0.0034756	-1.2682E-06	0.11082	4.0439E-05	364.9048102837898	33.165	1.1135	33.165	32.585	33.698	0					43	21	3	0	0	0	0.71881	1	10676	10676		3.8763	0.88109	1	8916100			44359	6314	32434	32699	43284	43284					0.15056812487728166
RPLWLLLWIWL	11	Unmodified	_RPLWLLLWIWL_					0	0	0		ENST00000372476.7_1_1:43773103-43773491:+|nuORF	ENST00000372476.7_1_1:43773103-43773491:+|nuORF	ENST00000372476.7_1_1:43773103-43773491:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	504.0427551269531	3	503.642864	1507.90676	-0.97304	-0.00049006	0.98177	0.00049446	0.008732	4.3978E-06	503.6432251058059	24.391	0.35555	25.035	24.857	25.212	0.64368					16	6	4	0	0	0	1.0015	1	8015	8015		0.094841	0.011491	1	24331000			44360	11202	32435	32700	43285	43285					0.17312519863799025
RPMWTRKLKK	10	Unmodified	_RPMWTRKLKK_					0	0	0			REV__ENST00000507606.2_1_7:135347283-135358947:+|nuORF	REV__ENST00000507606.2_1_7:135347283-135358947:+|nuORF	MSMS	A375_MHC_IP_R1	1	672.1603393554688	2	672.408266	1342.80198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.87	1	133.87	133.37	134.37	0								0	0	0	0.15596	1	51625	51625		1.4819	0	1		+		44361	25569	32436	32701	43286	43286					0.14429075115572232
RPPGGGGG	8	Unmodified	_RPPGGGGG_					0	0	0		ENSG00000146834|ENST00000310512|MEPCE;ENST00000362058.2_2_1:16957286-16958865:-|nuORF	ENSG00000146834|ENST00000310512|MEPCE	ENSG00000146834|ENST00000310512|MEPCE	MULTI-MSMS	A375_MHC_IP_R1	1	654.3005981445312	1	654.331799	653.324522	-0.77644	-0.00050805	0.12069	7.8969E-05	-0.65576	-0.00042908	654.3319018028274	145.06	1.7999	145.06	144.3	146.1	0					226	121	2	0	0	0	0.77861	1	55596	55596		0	0	1	641820			44362	5641	32437	32702	43287	43287					-0.016007243736567034
RPPLGGRD	8	Unmodified	_RPPLGGRD_					0	0	0			REV__ENST00000400979.2_1_1:166244929-166246012:-|nuORF	REV__ENST00000400979.2_1_1:166244929-166246012:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	434.64300537109375	2	434.243401	866.472249	0.30626	0.00013299	-0.07701	-3.3441E-05	0.22925	9.9549E-05	434.24328233893596	114.34	3.3501	114.34	112.89	116.24	0					136	65	3	0	0	0	0.77797	1	41865	41865		2.3027	0	1	16259000	+		44363	24407	32438	32703	43288	43288					0.03367167160331519
RPPLGTAAV	9	Unmodified	_RPPLGTAAV_					0	0	0			REV__nc|ENSG00000215041|Q96JN8-2|NEURL4	REV__nc|ENSG00000215041|Q96JN8-2|NEURL4	MSMS	A375_MHC_IP_R1	1	441.6112060546875	2	441.263802	880.513051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.93	1	31.93	31.43	32.43	0								0	0	0	0.15468	1	10269	10269		13.906	0.86358	1		+		44364	22668	32439	32704	43289	43289					0.06801508479929907
RPPNRNDF	8	Unmodified	_RPPNRNDF_					0	0	0		ENSG00000223658|ENST00000475092|C1GALT1C1L	ENSG00000223658|ENST00000475092|C1GALT1C1L	ENSG00000223658|ENST00000475092|C1GALT1C1L	MSMS	A375_MHC_IP_R1	1	508.1820983886719	2	508.25704	1014.49953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.008	1	48.008	47.508	48.508	0								0	0	0	0.16876	1	16911	16911		14.838	4.7643	1				44365	9688	32440	32705	43290	43290					-0.007143492993009204
RPPPLTERV	9	Unmodified	_RPPPLTERV_					0	0	0			REV__nc|ENSG00000089685|O15392-5|BIRC5	REV__nc|ENSG00000089685|O15392-5|BIRC5	MULTI-MSMS	A375_MHC_IP_R1	1	355.45989990234375	3	355.545219	1063.61383	0.50915	0.00018103	-0.55847	-0.00019856	-0.049317	-1.7534E-05	355.54497501238984	45.031	0.35609	45.031	44.878	45.234	0					10	6	2	0	0	0	0.74768	1	15814	15814		2.7352	0	1	2577600	+		44366	27133	32441	32706	43291	43291					0.08456540462793782
RPQFEAKYY	9	Unmodified	_RPQFEAKYY_					0	0	0		ANO3|p.M524Rfs*4|1|0.09|ENSG00000134343|chr11:26598898-26598898|T/-|frameshift_variant;ANO3|p.K523Nfs*13|1|0.09|ENSG00000134343|chr11:26598895-26598896|-/T|frameshift_variant;ENSG00000134343|ENST00000256737|ANO3;nc|ENSG00000134343|Q9BYT9-2|ANO3	ANO3|p.M524Rfs*4|1|0.09|ENSG00000134343|chr11:26598898-26598898|T/-|frameshift_variant	ANO3|p.M524Rfs*4|1|0.09|ENSG00000134343|chr11:26598898-26598898|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	401.6380615234375	3	401.204862	1200.59276	-0.22283	-8.9402E-05	0.40823	0.00016378	0.18539	7.4381E-05	401.20497419100644	51.143	0.50819	51.143	50.864	51.373	0					11	9	2	0	0	0	0.64971	1	18149	18149		11.495	3.0504	1	1734700			44367	149	32442	32707	43292	43292					0.0004853036330132454
RPQGGALI	8	Unmodified	_RPQGGALI_					0	0	0			REV__GNB1L|p.S119N|1|0.32|ENSG00000185838|chr22:19812346-19812346|C/T|missense_variant	REV__GNB1L|p.S119N|1|0.32|ENSG00000185838|chr22:19812346-19812346|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	406.6300354003906	2	406.24287	810.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.95	1	101.95	101.45	102.45	0								0	0	0	0.16876	1	37463	37463		2.3027	0	1		+		44368	21923	32443	32708	43293	43293					0.05836952791423755
RPQVRLPVK	9	Unmodified	_RPQVRLPVK_					0	0	0		nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A	nc|ENSG00000198604|Q9NRL2-2|BAZ1A	nc|ENSG00000198604|Q9NRL2-2|BAZ1A	MULTI-MSMS	A375_MHC_IP_R2	2	365.3050231933594	3	364.904859	1091.69275	0.00056625	2.0663E-07	0.070718	2.5805E-05	0.071284	2.6012E-05	364.90489878547214	32.167	0.70911	32.904	32.504	33.213	0.73691					35	13	3	0	0	0	0.62591	1	11375	11375		13.615	3.4643	1	9314600			44369	9290	32444	32709	43294	43294					0.15056812487750904
RPRASQGPPS	10	Unmodified	_RPRASQGPPS_					0	0	0		nc|ENSG00000196208|Q4ZG55-4|GREB1;chr2:11612376-11612495|422|29.65|0.12|7.99|+|ENST00000396123|GREB1,GREB1;ENSG00000196208|ENST00000381486|GREB1	nc|ENSG00000196208|Q4ZG55-4|GREB1	nc|ENSG00000196208|Q4ZG55-4|GREB1	MULTI-SECPEP	A375_MHC_IP_R2	2	526.6552734375	2	526.783422	1051.55229	-0.7632	-0.00040204	-2.894	-0.0015245	-3.6572	-0.0019265	527.7873495933494	60.676	0.55936	61.421	61.109	61.668	0.74504					18	10	3	0	0	0	0.77204	1	22890	22890		27.629	15.989	1	1872700			44370	459	32445	32710	43295	43295					0.028576087635201475
RPRDAALP	8	Unmodified	_RPRDAALP_					0	0	0		KIF1A|p.E770Rfs*62|1|0.42|ENSG00000130294|chr2:240760775-240760776|-/G|frameshift_variant	KIF1A|p.E770Rfs*62|1|0.42|ENSG00000130294|chr2:240760775-240760776|-/G|frameshift_variant	KIF1A|p.E770Rfs*62|1|0.42|ENSG00000130294|chr2:240760775-240760776|-/G|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	448.65814208984375	2	448.259051	894.503549	-0.20332	-9.1141E-05	-0.62113	-0.00027843	-0.82445	-0.00036957	448.2586663269635	129.12	0.96786	129.12	128.73	129.7	0					28	18	3	0	0	0	0.77839	1	49645	49645		0.79363	0	1	27258000			44371	14215	32446	32711	43296	43296					0.052077401944075064
RPRDHHPLKR	10	Unmodified	_RPRDHHPLKR_					0	0	0		ENST00000369800.5_1_5:172116953-172117430:+|nuORF	ENST00000369800.5_1_5:172116953-172117430:+|nuORF	ENST00000369800.5_1_5:172116953-172117430:+|nuORF	MSMS	A375_MHC_IP_R2	2	656.4432373046875	2	656.378886	1310.74322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.83	1	133.99	133.49	134.49	0.16487								0	0	0	0.15549	1	52645	52645		2.9952	0	1				44372	11141	32447	32712	43297	43297					0.10027734865434468
RPRDRRRQEE	10	Unmodified	_RPRDRRRQEE_					0	0	0		nc|ENSG00000121940|Q96S66-4|CLCC1;nc|ENSG00000121940|Q96S66-3|CLCC1;nc|ENSG00000121940|Q96S66-2|CLCC1;ENSG00000121940|ENST00000369969|CLCC1	nc|ENSG00000121940|Q96S66-4|CLCC1	nc|ENSG00000121940|Q96S66-4|CLCC1	MULTI-SECPEP	A375_MHC_IP_R1	1	467.0081481933594	3	466.58714	1396.73959	-0.49195	-0.00022954	0.69699	0.0003252	0.20504	9.5668E-05	466.5874299136265	131.48	0.80771	131.48	131.07	131.88	0					31	15	3	0	0	0	0.94755	1	50629	50629		3.0723	1.7426	1	5142500			44373	3752	32448	32713	43298	43298					0.05709020300946577
RPREGLWSH	9	Unmodified	_RPREGLWSH_					0	0	0		nc|ENSG00000183798|Q9NT22-2|EMILIN3;ENSG00000183798|ENST00000332312|EMILIN3	nc|ENSG00000183798|Q9NT22-2|EMILIN3	nc|ENSG00000183798|Q9NT22-2|EMILIN3	MULTI-SECPEP	A375_MHC_IP_R2	2	379.27716064453125	3	379.868585	1136.58392	0.0064391	2.446E-06	-1.0487	-0.00039837	-1.0423	-0.00039593	379.86816432203995	27.9	0.50617	28.579	28.2	28.706	0.67857					15	9	2	0	0	0	0.73363	1	9502	9502		15.248	0	1	4856000			44374	8530	32449	32714	43299	43299					0.021096015174634886
RPREGLWSH	9	Unmodified	_RPREGLWSH_					0	0	0		nc|ENSG00000183798|Q9NT22-2|EMILIN3;ENSG00000183798|ENST00000332312|EMILIN3	nc|ENSG00000183798|Q9NT22-2|EMILIN3	nc|ENSG00000183798|Q9NT22-2|EMILIN3	MULTI-MATCH	A375_MHC_IP_R1	1		3	379.868585	1136.58392	0.4461	0.00016946	-1.1529	-0.00043794	-0.70677	-0.00026848	379.86810024716453	28.617	0.40609	28.617	28.339	28.745	0	0.019221	-5.5534E-05	NaN	10.8	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6679000			44375	8530	32449	32714							0.021096015174634886
RPREGPEAEL	10	Unmodified	_RPREGPEAEL_					0	0	0		nc|ENSG00000118369|Q9P2H5-2|USP35;ENSG00000118369|ENST00000529308|USP35	nc|ENSG00000118369|Q9P2H5-2|USP35	nc|ENSG00000118369|Q9P2H5-2|USP35	MULTI-SECPEP	A375_MHC_IP_R1	1	384.6661071777344	3	385.203522	1152.58874	0.2511	9.6725E-05	-2.8301	-0.0010902	-2.579	-0.00099343	385.2026136912498	46.399	0.65565	46.399	46.043	46.699	0					19	12	2	0	0	0	0.9269	1	16219	16219		9.544	9.1357	1	1749900			44376	3538	32450	32715	43300	43300					0.01854440869578866
RPRKPEKW	8	Unmodified	_RPRKPEKW_					0	0	0			REV__ENSG00000103064|ENST00000219343|SLC7A6	REV__ENSG00000103064|ENST00000219343|SLC7A6	MULTI-MSMS	A375_MHC_IP_R1	1	366.5889892578125	3	366.217325	1095.63015	0.16767	6.1402E-05	0.29873	0.0001094	0.4664	0.0001708	366.2174462616774	19.719	0.60874	19.719	19.471	20.079	0					18	11	2	0	0	0	0.77583	1	5023	5023		10.074	0.6908	1	3072300	+		44377	17250	32451	32716	43301	43301					0.0861566641956415
RPRLAAWRGRV	11	Unmodified	_RPRLAAWRGRV_					0	0	0		nc|ENSG00000133433|P0CG29|GSTT2;ENSG00000133433|ENST00000290765|GSTT2B	nc|ENSG00000133433|P0CG29|GSTT2	nc|ENSG00000133433|P0CG29|GSTT2	MULTI-MSMS	A375_MHC_IP_R2	2	669.8033447265625	2	669.404904	1336.79525	-0.58143	-0.00038921	-0.040473	-2.7093E-05	-0.6219	-0.0004163	669.404119095689	149.2	2.1323	149.22	147.88	150.01	0.018707					267	76	5	0	0	0	0.73934	1	58172	58172		0	0	1	1219000			44378	4510	32452	32717	43302	43302					0.14032898279151595
RPRMWRRWLP	10	Unmodified	_RPRMWRRWLP_					0	0	0			REV__ENST00000391992.3_1_12:9181361-9181625:-|nuORF	REV__ENST00000391992.3_1_12:9181361-9181625:-|nuORF	MSMS	A375_MHC_IP_R1	1	727.8101196289062	2	727.409132	1452.80371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.08	1	144.08	143.58	144.58	0								0	0	0	0.15629	1	55259	55259		0.40072	0.050084	1		+		44379	24268	32453	32718	43303	43303					0.0954212892418127
RPRRPRRWWRQ	11	Unmodified	_RPRRPRRWWRQ_					0	0	0		ENST00000372022.5_1_9:136199397-136199478:-|nuORF	ENST00000372022.5_1_9:136199397-136199478:-|nuORF	ENST00000372022.5_1_9:136199397-136199478:-|nuORF	MSMS	A375_MHC_IP_R1	1	550.68505859375	3	550.65393	1648.93996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.74	1	101.74	101.24	102.24	0								0	0	0	0.1636	1	37387	37387		0	0	1				44380	11188	32454	32719	43304	43304					0.1414495947906289
RPRRQLPAL	9	Unmodified	_RPRRQLPAL_					0	0	0		ENST00000487903.5_1_13:113536381-113537092:+|nuORF	ENST00000487903.5_1_13:113536381-113537092:+|nuORF	ENST00000487903.5_1_13:113536381-113537092:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	369.9681396484375	3	369.568358	1105.68324	-0.021426	-7.9183E-06	-0.45089	-0.00016664	-0.47232	-0.00017455	369.5681011061913	137.82	0.25624	137.82	137.69	137.95	0					7	4	2	0	0	0	0.77526	1	53048	53048		0.26902	0	1	1395000			44381	12603	32455	32720	43305	43305					0.13463044202217134
RPRRQLPAL	9	Unmodified	_RPRRQLPAL_					0	0	0		ENST00000487903.5_1_13:113536381-113537092:+|nuORF	ENST00000487903.5_1_13:113536381-113537092:+|nuORF	ENST00000487903.5_1_13:113536381-113537092:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	369.568358	1105.68324	0.47869	0.00017691	-1.1002	-0.00040659	-0.62148	-0.00022968	369.56793640628285	137.76	0.25298	137.84	137.71	137.96	0.083954	0.012478	-0.00023223	NaN	0.26902	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	669050			44382	12603	32455	32720							0.13463044202217134
RPRRTAMSI	9	Unmodified	_RPRRTAMSI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R1	1	544.7106323242188	2	544.311292	1086.60803	-0.53073	-0.00028888	-0.043557	-2.3708E-05	-0.57429	-0.00031259	544.3111279420913	88.053	0.66275	88.053	87.696	88.358	0					28	12	3	0	0	0	0.65246	1	32310	32310		15.847	15.847	1	5500900			44383	6151;14694	32456	32721	43306	43306					0.06819118679482017
RPRRTAMSI	9	Unmodified	_RPRRTAMSI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	A375_MHC_IP_R2	2		2	544.311292	1086.60803	-0.6999	-0.00038096	0.082708	4.5019E-05	-0.61719	-0.00033594	544.3109203992443	87.134	0.96033	87.867	87.509	88.469	0.733	-0.093067	0.00010031	NaN	15.847	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5970400			44384	6151;14694	32456	32721							0.06819118679482017
RPRRWLKRRLK	11	Unmodified	_RPRRWLKRRLK_					0	0	0		ENST00000251102.12_1_16:57965650-57974178:-|nuORF	ENST00000251102.12_1_16:57965650-57974178:-|nuORF	ENST00000251102.12_1_16:57965650-57974178:-|nuORF	MSMS	A375_MHC_IP_R2	2	782.917236328125	2	783.010402	1564.00625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.112	1	34.865	34.365	35.365	0.75225								0	0	0	0.1636	1	12274	12274		0	0	1				44385	10201	32457	32722	43307	43307					0.24680775321098736
RPRWRDQLLFM	11	Unmodified	_RPRWRDQLLFM_					0	0	0		TMEM140|p.L82Pfs*28|1|0.17|ENSG00000146859|chr7:135164680-135164681|-/G|frameshift_variant;ENSG00000146859|ENST00000275767|TMEM140	TMEM140|p.L82Pfs*28|1|0.17|ENSG00000146859|chr7:135164680-135164681|-/G|frameshift_variant	TMEM140|p.L82Pfs*28|1|0.17|ENSG00000146859|chr7:135164680-135164681|-/G|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	507.98052978515625	3	506.610117	1516.80852	0.03645	1.8466E-05	0.61451	0.00031132	0.65096	0.00032978	506.61041418005857	44.599	0.7626	44.599	44.318	45.081	0					40	14	5	0	0	0	0.73809	1	15570	15570		0.40827	0	1	47704000			44386	5644	32458	32723	43308	43308					0.0707896827627792
RPRYCKIQK	9	Unmodified	_RPRYCKIQK_					0	0	0		ENSG00000149150|ENST00000278426|SLC43A1;nc|ENSG00000149150|O75387-2|SLC43A1	ENSG00000149150|ENST00000278426|SLC43A1	ENSG00000149150|ENST00000278426|SLC43A1	MSMS	A375_MHC_IP_R1	1	397.9312744140625	3	397.897487	1190.67063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.878	1	23.878	23.378	24.378	0								0	0	0	0.15486	1	6648	6648		7.1017	0	1				44387	5786	32459	32724	43309	43309					0.08292264747660738
RPSDFHKWL	9	Unmodified	_RPSDFHKWL_					0	0	0			REV__ENSG00000206557|ENST00000383763|TRIM71	REV__ENSG00000206557|ENST00000383763|TRIM71	MULTI-SECPEP	A375_MHC_IP_R1	1	395.9598388671875	3	395.876969	1184.60908	0.02315	9.1644E-06	-0.086346	-3.4182E-05	-0.063196	-2.5018E-05	395.8763995105603	20.326	1.0177	20.326	19.827	20.844	0					32	19	3	0	0	0	0.71341	1	5151	5151		5.7834	0	1	6149300	+		44388	22598	32460	32725	43310	43310					0.024156563200449455
RPSDIKGELSD	11	Unmodified	_RPSDIKGELSD_					0	0	0			REV__nc|ENSG00000196557|O95180-2|CACNA1H	REV__nc|ENSG00000196557|O95180-2|CACNA1H	MULTI-SECPEP	A375_MHC_IP_R1	1	609.2116088867188	2	608.812042	1215.60953	-0.60882	-0.00037066	0.30208	0.00018391	-0.30674	-0.00018675	608.8121333075846	36.553	0.45638	36.553	36.339	36.795	0					21	8	4	0	0	0	0.56859	1	12230	12230		47.732	5.8923	1	9577700	+		44389	27437	32461	32726	43311	43311					0.010349864585805335
RPSRRFLGKKY	11	Unmodified	_RPSRRFLGKKY_					0	0	0		ENSG00000198026|ENST00000322927|ZNF335;nc|ENSG00000198026|Q9H4Z2-2|ZNF335;ENST00000475002.1_1_20:44592360-44592642:-|nuORF	ENSG00000198026|ENST00000322927|ZNF335	ENSG00000198026|ENST00000322927|ZNF335	MULTI-SECPEP	A375_MHC_IP_R2	2	352.6100158691406	4	352.713748	1406.82589	-0.48775	-0.00017204	-1.0216	-0.00036032	-1.5093	-0.00053235	352.7133209352079	23.829	0.40845	24.459	24.283	24.691	0.63014					9	7	2	0	0	0	1.0005	1	7742	7742		1.1098	0	1	1394200			44390	9224	32462	32727	43312	43312					0.1387463187359117
RPTAPYSADY	10	Unmodified	_RPTAPYSADY_					0	0	0			REV__SLC45A4|p.H336Y|1|0.37|ENSG00000022567|chr8:141218634-141218634|G/A|missense_variant	REV__SLC45A4|p.H336Y|1|0.37|ENSG00000022567|chr8:141218634-141218634|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	380.2644348144531	3	380.848856	1139.52474	-0.1018	-3.877E-05	0.64074	0.00024403	0.53894	0.00020526	380.8488815414323	29.2	0.65823	29.2	28.745	29.403	0					24	12	3	0	0	0	0.77204	1	8964	8964		10.315	2.7063	1	11832000	+		44391	27997	32463	32728	43313	43313					-0.03944339287386356
RPTAPYSADY	10	Unmodified	_RPTAPYSADY_					0	0	0			REV__SLC45A4|p.H336Y|1|0.37|ENSG00000022567|chr8:141218634-141218634|G/A|missense_variant	REV__SLC45A4|p.H336Y|1|0.37|ENSG00000022567|chr8:141218634-141218634|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	380.2641906738281	3	380.848856	1139.52474	-0.47895	-0.00018241	0.47443	0.00018068	-0.0045214	-1.722E-06	380.8489829144238	28.459	0.50646	29.138	28.757	29.263	0.67857					21	9	3	0	0	0	0.8528	1	9701	9701		7.0371	0	1	14681000	+		44392	27997	32463	32728	43314	43314					-0.03944339287386356
RPTQLNCLPL	10	Unmodified	_RPTQLNCLPL_					0	0	0		ARSJ|p.P150L|1|0.28|ENSG00000180801|chr4:113903625-113903625|G/A|missense_variant	ARSJ|p.P150L|1|0.28|ENSG00000180801|chr4:113903625-113903625|G/A|missense_variant	ARSJ|p.P150L|1|0.28|ENSG00000180801|chr4:113903625-113903625|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	385.94891357421875	3	385.549864	1153.62776	-0.19269	-7.4292E-05	-2.6651	-0.0010275	-2.8578	-0.0011018	385.5488878768198	29.428	0.20141	29.428	29.302	29.504	0					5	3	2	0	0	0	0.70442	1	9250	9250		10.315	0.93211	1	13048000			44393	183	32464	32729	43315	43315					0.05709449899586616
RPVDRAKRRK	10	Unmodified	_RPVDRAKRRK_					0	0	0		nc|ENSG00000099954|Q9BXF3|CECR2;nc|ENSG00000099954|Q9BXF3-2|CECR2	nc|ENSG00000099954|Q9BXF3|CECR2	nc|ENSG00000099954|Q9BXF3|CECR2	MSMS	A375_MHC_IP_R2	2	641.30224609375	2	641.402361	1280.79017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.23	1	145.25	144.75	145.75	0.021408								0	0	0	0.15629	1	56706	56706		0.40072	0.093686	1				44394	14503	32465	32730	43316	43316					0.16100594416593594
RPVKLLRRRFR	11	Unmodified	_RPVKLLRRRFR_					0	0	0		ENSG00000139044|ENST00000266383|B4GALNT3	ENSG00000139044|ENST00000266383|B4GALNT3	ENSG00000139044|ENST00000266383|B4GALNT3	MSMS	A375_MHC_IP_R1	1	748.9931030273438	2	748.991678	1495.9688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.695	1	99.695	99.195	100.19	0								0	0	0	0.1636	1	36627	36627		0	0	1				44395	5046	32466	32731	43317	43317					0.24065684055472047
RPVPIRLDI	9	Unmodified	_RPVPIRLDI_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-SECPEP	A375_MHC_IP_R1	1	359.9290771484375	3	360.229231	1077.66586	0.18114	6.5251E-05	-0.10968	-3.9509E-05	0.071459	2.5742E-05	360.22910596583404	33.749	0.60794	33.749	33.342	33.95	0					18	11	2	0	0	0	0.76452	1	10935	10935		8.1555	0	1	900920	+		44396	27313	32467	32732	43318	43318					0.13013703876549698
RPVRLLQRLK	10	Unmodified	_RPVRLLQRLK_					0	0	0		ITIH5|p.Q38P|1|0.28|ENSG00000123243|chr10:7655653-7655653|T/G|missense_variant	ITIH5|p.Q38P|1|0.28|ENSG00000123243|chr10:7655653-7655653|T/G|missense_variant	ITIH5|p.Q38P|1|0.28|ENSG00000123243|chr10:7655653-7655653|T/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	1278.3721923828125	1	1278.84808	1277.84081	0.39734	0.00050814	-3.6281	-0.0046398	-3.2307	-0.0041316	1278.8427162461614	113.05	0.14974	113.05	112.94	113.09	0					4	2	2	0	0	0	0.93799	1	41433	41433		6.7232	0	1	1398200			44397	14180	32468	32733	43319	43319					0.2130012374159378
RPVRLLQRLK	10	Unmodified	_RPVRLLQRLK_					0	0	0		ITIH5|p.Q38P|1|0.28|ENSG00000123243|chr10:7655653-7655653|T/G|missense_variant	ITIH5|p.Q38P|1|0.28|ENSG00000123243|chr10:7655653-7655653|T/G|missense_variant	ITIH5|p.Q38P|1|0.28|ENSG00000123243|chr10:7655653-7655653|T/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	1278.3692626953125	1	1278.84808	1277.84081	0.48287	0.00061752	-3.2322	-0.0041335	-2.7494	-0.003516	1279.8464695750586	112.55	0.20393	113.27	113.12	113.32	0.72458					7	3	3	0	0	0	0.94516	1	42409	42409		3.5965	0	1	4359500			44398	14180	32468	32733	43320	43320					0.2130012374159378
RPWKFSKRWLY	11	Unmodified	_RPWKFSKRWLY_					0	0	0			REV__ENST00000466650.5_1_3:182788929-182817286:-|nuORF	REV__ENST00000466650.5_1_3:182788929-182817286:-|nuORF	MSMS	A375_MHC_IP_R2	2	783.76513671875	2	783.938245	1565.86194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.92	1	103.68	103.18	104.18	0.76428								0	0	0	0.16337	1	38985	38985		1.1933	0	1		+		44399	25041	32469	32734	43321	43321					0.10164089050476832
RPWRPLRREQR	11	Unmodified	_RPWRPLRREQR_					0	0	0		ENST00000293968.11_1_16:2507035-2507140:+|nuORF	ENST00000293968.11_1_16:2507035-2507140:+|nuORF	ENST00000293968.11_1_16:2507035-2507140:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1934204101562	3	517.302675	1548.8862	-0.5523	-0.00028571	-0.066434	-3.4366E-05	-0.61874	-0.00032007	517.3022938088559	142.53	0.40868	142.56	142.28	142.69	0.030731					16	7	3	0	0	0	1.0015	1	55656	55656		0.08335	0.08335	1	1770200			44400	10485	32470	32735	43322	43322					0.13370742256688573
RPWRQREGE	9	Unmodified	_RPWRQREGE_					0	0	0		ENSG00000187550|ENST00000413299|SBK2	ENSG00000187550|ENST00000413299|SBK2	ENSG00000187550|ENST00000413299|SBK2	MULTI-SECPEP	A375_MHC_IP_R1	1	404.61669921875	3	405.21101	1212.6112	-0.41255	-0.00016717	-0.69749	-0.00028263	-1.11	-0.0004498	405.54540025249037	24.987	0.2524	24.987	24.801	25.053	0					6	4	2	0	0	0	0.775	1	7189	7189		10.8	4.1691	1	3530400			44401	8835	32471	32736	43323	43323					0.013400850578591417
RPYHRILIERQ	11	Unmodified	_RPYHRILIERQ_					0	0	0		ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	MULTI-MSMS	A375_MHC_IP_R2	2	493.6926574707031	3	494.288031	1479.84226	-0.30045	-0.00014851	-0.41567	-0.00020546	-0.71613	-0.00035397	494.2877475607763	142.28	0.60941	142.31	142.03	142.64	0.030731					20	9	3	0	0	0	0.73809	1	55575	55575		0.40827	0	1	24088000			44402	6160	32472	32737	43324	43324					0.12153713039697323
RQADKVWRL	9	Unmodified	_RQADKVWRL_					0	0	0		ENSG00000147862|ENST00000380953|NFIB;NFIB|p.S300Ifs*17|1|0.35|ENSG00000147862|chr9:14146715-14146715|C/-|frameshift_variant;nc|ENSG00000147862|O00712|NFIB;nc|ENSG00000147862|O00712-2|NFIB;nc|ENSG00000147862|O00712-4|NFIB;NFIC|p.L132P|1|0.43|ENSG00000141905|chr19:3382076-3382076|T/C|missense_variant;ENSG00000162599|ENST00000403491|NFIA;ENSG00000141905|ENST00000443272|NFIC;ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000162599|Q12857-3|NFIA;nc|ENSG00000141905|P08651-2|NFIC;nc|ENSG00000162599|Q12857-2|NFIA;nc|ENSG00000008441|Q14938-2|NFIX;nc|ENSG00000008441|Q14938-4|NFIX;nc|ENSG00000008441|Q14938-3|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000141905|P08651-6|NFIC;nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000141905|P08651-3|NFIC;nc|ENSG00000141905|P08651-5|NFIC;nc|ENSG00000162599|Q12857-4|NFIA;nc|ENSG00000141905|P08651-4|NFIC	ENSG00000147862|ENST00000380953|NFIB;nc|ENSG00000141905|P08651-4|NFIC	ENSG00000147862|ENST00000380953|NFIB	MULTI-MSMS	A375_MHC_IP_R1	1	391.6280517578125	3	391.228001	1170.66217	0.13694	5.3574E-05	0.27919	0.00010923	0.41613	0.0001628	391.2280292713273	31.338	0.91438	31.338	31.059	31.973	0					63	17	5	0	0	0	0.0096822	2	9999	9999;10166		92.201	62.764	1	47989000			44403	5710;14647	32473	32738	43325;43326	43325					0.08367034102707294
RQADKVWRL	9	Unmodified	_RQADKVWRL_					0	0	0		ENSG00000147862|ENST00000380953|NFIB;NFIB|p.S300Ifs*17|1|0.35|ENSG00000147862|chr9:14146715-14146715|C/-|frameshift_variant;nc|ENSG00000147862|O00712|NFIB;nc|ENSG00000147862|O00712-2|NFIB;nc|ENSG00000147862|O00712-4|NFIB;NFIC|p.L132P|1|0.43|ENSG00000141905|chr19:3382076-3382076|T/C|missense_variant;ENSG00000162599|ENST00000403491|NFIA;ENSG00000141905|ENST00000443272|NFIC;ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000162599|Q12857-3|NFIA;nc|ENSG00000141905|P08651-2|NFIC;nc|ENSG00000162599|Q12857-2|NFIA;nc|ENSG00000008441|Q14938-2|NFIX;nc|ENSG00000008441|Q14938-4|NFIX;nc|ENSG00000008441|Q14938-3|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000141905|P08651-6|NFIC;nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000141905|P08651-3|NFIC;nc|ENSG00000141905|P08651-5|NFIC;nc|ENSG00000162599|Q12857-4|NFIA;nc|ENSG00000141905|P08651-4|NFIC	ENSG00000147862|ENST00000380953|NFIB;nc|ENSG00000141905|P08651-4|NFIC	ENSG00000147862|ENST00000380953|NFIB	MULTI-MSMS	A375_MHC_IP_R2	2	391.62799072265625	3	391.228001	1170.66217	-0.19413	-7.5948E-05	-0.090965	-3.5588E-05	-0.28509	-0.00011154	391.22795137971684	30.518	1.1138	31.237	30.809	31.923	0.71857					61	21	4	0	0	0	0.0015806	1	10674	10674		125.18	90.96	1	39471000			44404	5710;14647	32473	32738	43327	43327					0.08367034102707294
RQAELTVQV	9	Unmodified	_RQAELTVQV_					0	0	0		nc|ENSG00000073008|P15151-3|PVR;nc|ENSG00000073008|P15151-2|PVR;nc|ENSG00000073008|P15151-4|PVR;ENST00000187830.2_1_19:45147391-45165075:+|nuORF;nc|ENSG00000073008|P15151|PVR;ENSG00000073008|ENST00000425690|PVR	nc|ENSG00000073008|P15151-3|PVR	nc|ENSG00000073008|P15151-3|PVR	MULTI-MSMS	A375_MHC_IP_R2	2	522.69580078125	2	522.29583	1042.57711	-0.62937	-0.00032872	0.28266	0.00014763	-0.34671	-0.00018109	522.2961377687552	45.359	0.40591	46.124	45.947	46.353	0.76519					14	7	3	0	0	0	0.32889	1	16982	16982		28.495	3.5035	1	3981600			44405	1555	32474	32739	43328	43328					0.057522438462456194
RQAELTVQV	9	Unmodified	_RQAELTVQV_					0	0	0		nc|ENSG00000073008|P15151-3|PVR;nc|ENSG00000073008|P15151-2|PVR;nc|ENSG00000073008|P15151-4|PVR;ENST00000187830.2_1_19:45147391-45165075:+|nuORF;nc|ENSG00000073008|P15151|PVR;ENSG00000073008|ENST00000425690|PVR	nc|ENSG00000073008|P15151-3|PVR	nc|ENSG00000073008|P15151-3|PVR	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	522.29583	1042.57711	-0.49422	-0.00025813	-0.14765	-7.7114E-05	-0.64187	-0.00033524	522.2957419026086	46.279	0.45188	46.279	46.043	46.495	0	0.077492	-0.0001387	NaN	28.495	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2461200			44406	1555	32474	32739							0.057522438462456194
RQAIAPVI	8	Unmodified	_RQAIAPVI_					0	0	0			REV__ENST00000366847.8_1_6:167446117-167447391:+|nuORF	REV__ENST00000366847.8_1_6:167446117-167447391:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	435.2823486328125	2	434.27417	866.533787	-0.23175	-0.00010064	0.23239	0.00010092	0.0006381	2.7711E-07	434.2742694630885	64.725	1.7792	64.725	64.04	65.819	0					109	34	5	0	0	0	0.77686	1	23184	23184		6.3541	0.59368	1	257160000	+		44407	23943	32475	32740	43329	43329					0.09518098859598467
RQAQLRPRL	9	Unmodified	_RQAQLRPRL_					0	0	0		ENST00000426250.3_1_12:72666801-72667203:-|nuORF	ENST00000426250.3_1_12:72666801-72667203:-|nuORF	ENST00000426250.3_1_12:72666801-72667203:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	380.3035583496094	3	379.903629	1136.68906	0.3734	0.00014186	-0.54043	-0.00020531	-0.16703	-6.3454E-05	379.9034874077755	25.229	0.50877	25.229	25.053	25.562	0					20	9	3	0	0	0	0.65748	1	7334	7334		10.8	2.8541	1	12482000			44408	11802	32476	32741	43330	43330					0.12618142713881753
RQCDGKNAL	9	Unmodified	_RQCDGKNAL_					0	0	0		nc|ENSG00000266074|Q9P281|BAHCC1;ENSG00000266074|ENST00000675386|BAHCC1	nc|ENSG00000266074|Q9P281|BAHCC1	nc|ENSG00000266074|Q9P281|BAHCC1	MULTI-MSMS	A375_MHC_IP_R2	2	502.6685791015625	2	502.750733	1003.48691	-0.5774	-0.00029029	0.6272	0.00031533	0.049801	2.5038E-05	502.751045275165	63.357	1.2715	64.097	63.682	64.954	0.74022					43	24	2	0	0	0	0.51106	1	24031	24031		19.257	3.4098	1	2224400			44409	14934	32477	32742	43331	43331					-0.014691287538539655
RQCIEIKR	8	Unmodified	_RQCIEIKR_					0	0	0			REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1	REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	1045.992431640625	1	1045.59351	1044.58623	-0.2027	-0.00021195	-0.7918	-0.0008279	-0.9945	-0.0010398	1045.5927634571929	145.7	0.15781	145.7	145.63	145.79	0					18	12	2	0	0	0	0.77842	1	55811	55811		0.69038	0	1	289560	+		44410	28781	32478	32743	43332	43332					0.06572313930905693
RQCIEIKR	8	Unmodified	_RQCIEIKR_					0	0	0			REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1	REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	1045.59351	1044.58623	-0.2027	-0.00021195	-0.7918	-0.0008279	-0.9945	-0.0010398	1045.5927634571929	145.7	0.15781	145.7	145.63	145.79	0	-0.015415	-0.00013298	NaN	0.69038	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	289560	+		44411	28781	32478	32743							0.06572313930905693
RQCIEIKR	8	Unmodified	_RQCIEIKR_					0	0	0			REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1	REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		1	1045.59351	1044.58623	0.24274	0.00025381	-0.11077	-0.00011582	0.13197	0.00013799	1045.593193348994	145.71	0.10381	145.74	145.71	145.81	0.021408	0.015415	0.0005791	NaN	0.69038	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93727	+		44412	28781	32478	32743							0.06572313930905693
RQCRGHHHAAE	11	Unmodified	_RQCRGHHHAAE_					0	0	0		ENST00000564460.2_1_16:952537-955195:-|nuORF	ENST00000564460.2_1_16:952537-955195:-|nuORF	ENST00000564460.2_1_16:952537-955195:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	435.9386291503906	3	434.539133	1300.59557	-0.39592	-0.00017204	-1.1155	-0.00048474	-1.5114	-0.00065678	434.538875299157	36.071	0.81435	36.838	36.54	37.354	0.76606					63	15	6	0	0	0	0.73332	1	13246	13246		2.6312	0.19645	1	42226000			44413	13531	32479	32744	43333	43333					-0.042705247308049366
RQFAGASQW	9	Unmodified	_RQFAGASQW_					0	0	0		ENSG00000126705|ENST00000673934|AHDC1	ENSG00000126705|ENST00000673934|AHDC1	ENSG00000126705|ENST00000673934|AHDC1	MULTI-MSMS	A375_MHC_IP_R1	1	525.7022705078125	2	525.759415	1049.50428	-0.78123	-0.00041074	0.99876	0.00052511	0.21753	0.00011437	525.7595565076385	41.596	1.2198	41.596	40.963	42.183	0					27	23	2	0	0	0	0.2487	1	14389	14389		34.402	1.616	1	4004900			44414	4055	32480	32745	43334	43334					-0.018494651565333697
RQFDHPHIV	9	Unmodified	_RQFDHPHIV_					0	0	0		nc|ENSG00000169398|Q05397-2|PTK2;nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;ENST00000519899.5_1_8:141756852-141774450:-|nuORF;nc|ENSG00000169398|Q05397-4|PTK2;nc|ENSG00000169398|Q05397-3|PTK2	nc|ENSG00000169398|Q05397-2|PTK2	nc|ENSG00000169398|Q05397-2|PTK2	MULTI-SECPEP	A375_MHC_IP_R1	1	383.93682861328125	3	383.536835	1147.58868	0.11166	4.2826E-05	0.78368	0.00030057	0.89534	0.0003434	383.87151337419004	27.822	0.4033	27.822	27.634	28.037	0					27	7	6	0	0	0	0.56537	1	8479	8479		21.59	11.826	1	25563000			44415	7404	32481	32746	43335	43335					0.02078485660217666
RQFDHPHIV	9	Unmodified	_RQFDHPHIV_					0	0	0		nc|ENSG00000169398|Q05397-2|PTK2;nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;ENST00000519899.5_1_8:141756852-141774450:-|nuORF;nc|ENSG00000169398|Q05397-4|PTK2;nc|ENSG00000169398|Q05397-3|PTK2	nc|ENSG00000169398|Q05397-2|PTK2	nc|ENSG00000169398|Q05397-2|PTK2	MULTI-SECPEP	A375_MHC_IP_R2	2	383.93701171875	3	383.536835	1147.58868	-0.18227	-6.9909E-05	0.55211	0.00021175	0.36984	0.00014185	383.5367097855481	27.111	0.76634	27.789	27.281	28.047	0.67857					35	14	4	0	0	0	0.5212	1	9201	9201		24.882	10.476	1	22109000			44416	7404	32481	32746	43336	43336					0.02078485660217666
RQFFDCGHW	9	Unmodified	_RQFFDCGHW_					0	0	0		nc|ENSG00000174844|Q6ZR08|DNAH12;ENSG00000174844|ENST00000495027|DNAH12	nc|ENSG00000174844|Q6ZR08|DNAH12	nc|ENSG00000174844|Q6ZR08|DNAH12	MSMS	A375_MHC_IP_R1	1	399.6509704589844	3	399.174909	1194.5029	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.16532	1	0.16532	-0.33468	0.66532	0								0	0	0	0.15486	1	48	48		0.26902	0.033176	1				44417	7909	32482	32747	43337	43337					-0.0865742251694428
RQFFDCGHW	9	Unmodified	_RQFFDCGHW_					0	0	0		nc|ENSG00000174844|Q6ZR08|DNAH12;ENSG00000174844|ENST00000495027|DNAH12	nc|ENSG00000174844|Q6ZR08|DNAH12	nc|ENSG00000174844|Q6ZR08|DNAH12	MSMS	A375_MHC_IP_R1	1	399.6509094238281	3	399.174909	1194.5029	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.2876	1	2.2876	1.7876	2.7876	0								0	0	0	0.15486	1	525	525		0.26902	0.033176	1				44418	7909	32482	32747	43338	43338					-0.0865742251694428
RQFPNKEVLIK	11	Unmodified	_RQFPNKEVLIK_					0	0	0		ENSG00000004534|ENST00000266022|RBM6;ENST00000421682.1_1_3:50103854-50112609:+|nuORF;ENST00000454079.5_1_3:50099373-50114563:+|nuORF;ENST00000434592.5_1_3:50097096-50127827:+|nuORF;nc|ENSG00000004534|P78332-2|RBM6	ENSG00000004534|ENST00000266022|RBM6	ENSG00000004534|ENST00000266022|RBM6	MULTI-MSMS	A375_MHC_IP_R2	2	686.79345703125	2	686.408986	1370.80342	-0.47144	-0.0003236	-0.46982	-0.00032249	-0.94126	-0.00064609	686.4087216418893	143.64	0.45216	143.66	143.39	143.84	0.024414					12	8	2	0	0	0	0.73795	1	56072	56072		1.3295	0.25807	1	979050			44419	867	32483	32748	43339	43339					0.1328498768530153
RQGAPGRV	8	Unmodified	_RQGAPGRV_					0	0	0			REV__nc|ENSG00000069424|Q13303-5|KCNAB2	REV__nc|ENSG00000069424|Q13303-5|KCNAB2	MULTI-MSMS	A375_MHC_IP_R1	1	421.14373779296875	2	420.743568	839.472583	0.08895	3.7425E-05	0.25763	0.0001084	0.34658	0.00014582	420.7436324289718	103.97	1.7817	103.97	102.91	104.69	0					79	34	3	0	0	0	0.7779	1	38174	38174		2.5775	0	1	7968700	+		44420	27114	32484	32749	43340	43340					0.046425868801861725
RQGAPGRV	8	Unmodified	_RQGAPGRV_					0	0	0			REV__nc|ENSG00000069424|Q13303-5|KCNAB2	REV__nc|ENSG00000069424|Q13303-5|KCNAB2	MULTI-MSMS	A375_MHC_IP_R1	1	421.1435852050781	2	420.743568	839.472583	0.13584	5.7156E-05	0.13165	5.539E-05	0.26749	0.00011255	420.74353975848686	104.9	1.1145	104.9	104.49	105.6	0					42	21	3	0	0	0	0.7779	1	38578	38578		2.5775	0	1	7017800	+		44421	27114	32484	32749	43341	43341					0.046425868801861725
RQGAPGRV	8	Unmodified	_RQGAPGRV_					0	0	0			REV__nc|ENSG00000069424|Q13303-5|KCNAB2	REV__nc|ENSG00000069424|Q13303-5|KCNAB2	MULTI-MSMS	A375_MHC_IP_R1	1	421.1434631347656	2	420.743568	839.472583	0.29226	0.00012296	0.12121	5.1E-05	0.41347	0.00017396	420.74357443989106	108.89	3.0491	108.89	107.65	110.7	0					91	59	2	0	0	0	0.7779	1	40279	40279		2.5775	0	1	4705000	+		44422	27114	32484	32749	43342	43342					0.046425868801861725
RQGAPGRV	8	Unmodified	_RQGAPGRV_					0	0	0			REV__nc|ENSG00000069424|Q13303-5|KCNAB2	REV__nc|ENSG00000069424|Q13303-5|KCNAB2	MULTI-SECPEP	A375_MHC_IP_R1	1	421.1437072753906	2	420.743568	839.472583	0.13584	5.7156E-05	0.13165	5.539E-05	0.26749	0.00011255	420.74353975848686	104.9	1.1145	104.9	104.49	105.6	0					42	21	3	0	0	0	0.972	1	38378	38378		2.5775	0	1	7017800	+		44423	27114	32484	32749	43343	43343					0.046425868801861725
RQGYRPAI	8	Unmodified	_RQGYRPAI_					0	0	0			REV__ENSG00000172548|ENST00000311946|NIPAL4	REV__ENSG00000172548|ENST00000311946|NIPAL4	MULTI-SECPEP	A375_MHC_IP_R1	1	481.14837646484375	2	480.772326	959.530098	-0.64065	-0.00030801	0.0063343	3.0454E-06	-0.63432	-0.00030496	480.7723184989498	32.659	0.60503	32.659	32.333	32.938	0					20	11	2	0	0	0	0.94479	1	10526	10526		13.508	0	1	6464700	+		44424	21155	32485	32750	43344	43344					0.04871429085756063
RQHAAAQQW	9	Unmodified	_RQHAAAQQW_					0	0	0			REV__ENSG00000215910|ENST00000688073|C1orf167	REV__ENSG00000215910|ENST00000688073|C1orf167	MULTI-MSMS	A375_MHC_IP_R1	1	548.68310546875	2	548.275764	1094.53697	-0.45953	-0.00025195	-2.8829	-0.0015806	-3.3424	-0.0018326	548.2737344298685	56.875	0.71432	56.875	56.548	57.263	0					35	13	4	0	0	0	0.2264	1	20428	20428		36.044	3.7387	1	5865400	+		44425	22678	32486	32751	43345	43345					-0.006512580336675455
RQHLRRLRPRR	11	Unmodified	_RQHLRRLRPRR_					0	0	0			REV__ENSG00000136378|ENST00000388820|ADAMTS7	REV__ENSG00000136378|ENST00000388820|ADAMTS7	MSMS	A375_MHC_IP_R2	2	772.484619140625	2	772.485082	1542.95561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.48	1	121.92	121.42	122.42	0.44488								0	0	0	0.1636	1	46464	46464		0	0	1		+		44426	18932	32487	32752	43346	43346					0.20585245996085177
RQHPEVSRKKV	11	Unmodified	_RQHPEVSRKKV_					0	0	0		ENST00000437071.5_1_22:27068919-27134146:+|nuORF	ENST00000437071.5_1_22:27068919-27134146:+|nuORF	ENST00000437071.5_1_22:27068919-27134146:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	455.0012512207031	3	455.268748	1362.78442	-0.56161	-0.00025569	1.4874	0.00067717	0.92579	0.00042148	455.26940652699506	24.628	0.15306	25.272	25.161	25.314	0.64368					4	2	2	0	0	0	0.99856	1	8138	8138		5.5233	3.2706	1	2011600			44427	11934	32488	32753	43347	43347					0.11753451114259406
RQHTSLHSKQ	10	Unmodified	_RQHTSLHSKQ_					0	0	0			REV__ENSG00000081386|ENST00000223428|ZNF510	REV__ENSG00000081386|ENST00000223428|ZNF510	MULTI-MSMS	A375_MHC_IP_R1	1	611.7562255859375	2	611.325985	1220.63742	-0.44396	-0.0002714	-0.45597	-0.00027875	-0.89993	-0.00055015	611.3255603736471	129.12	1.121	129.12	128.68	129.8	0					51	21	3	0	0	0	0.71653	1	49498	49498		4.897	0.56777	1	23562000	+		44428	16776	32489	32754	43348	43348					0.03592354229317607
RQHTTLEFK	9	Unmodified	_RQHTTLEFK_					0	0	0			REV__nc|ENSG00000184517|Q6P2D0-2|ZFP1	REV__nc|ENSG00000184517|Q6P2D0-2|ZFP1	MULTI-SECPEP	A375_MHC_IP_R2	2	386.9449768066406	3	387.212128	1158.61456	-0.41491	-0.00016066	2.6171	0.0010134	2.2022	0.00085272	387.2133398638393	19.136	0.53321	19.739	19.452	19.986	0.60308					14	10	2	0	0	0	0.67483	1	5854	5854		6.6304	2.1015	1	2199300	+		44429	21824	32490	32755	43349	43349					0.04159335111830842
RQHVKLQPK	9	Unmodified	_RQHVKLQPK_					0	0	0			REV__ENSG00000105497|ENST00000262259|ZNF175	REV__ENSG00000105497|ENST00000262259|ZNF175	MULTI-MSMS	A375_MHC_IP_R2	2	378.6204833984375	3	378.568247	1132.68291	-0.22104	-8.368E-05	0.1397	5.2887E-05	-0.081339	-3.0792E-05	378.56830319041813	21.23	0.86116	21.849	21.169	22.03	0.61932					41	16	3	0	0	0	0.69884	1	6732	6732		7.1017	1.3699	1	3364000	+		44430	17388	32491	32756	43350	43350					0.1218762448236248
RQIASLVWR	9	Unmodified	_RQIASLVWR_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	A375_MHC_IP_R1	1	376.91375732421875	3	376.89273	1127.65636	0.26387	9.945E-05	-0.20001	-7.5382E-05	0.063859	2.4068E-05	376.8926556122736	27.436	0.55598	27.436	27.179	27.735	0					31	10	4	0	0	0	0.67332	1	8208	8208		6.1918	0.89496	1	20040000			44431	6694	32492	32757	43351	43351					0.09763935591035988
RQIDQFLVV	9	Unmodified	_RQIDQFLVV_					0	0	0		ENSG00000149480|ENST00000278823|MTA2;nc|ENSG00000149480|O94776-2|MTA2;ENST00000531261.1_1_11:62365080-62365595:-|nuORF;ENSG00000057935|ENST00000405094|MTA3;nc|ENSG00000057935|Q9BTC8-2|MTA3	ENSG00000149480|ENST00000278823|MTA2;ENSG00000057935|ENST00000405094|MTA3	ENSG00000149480|ENST00000278823|MTA2	MULTI-SECPEP	A375_MHC_IP_R2	2	559.7210083007812	2	559.321848	1116.62914	-0.59915	-0.00033512	0.12562	7.0264E-05	-0.47353	-0.00026486	559.3218431958697	89.116	0.70335	89.848	89.584	90.287	0.7318					36	13	4	0	0	0	0.51395	1	33885	33885		31.268	9.7314	1	12225000			44432	5807;1289	32493	32758	43352	43352					0.07549407259989493
RQIEVLTTV	9	Unmodified	_RQIEVLTTV_					0	0	0		ENST00000440623.5_1_2:182756982-182781157:+|nuORF;nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2	ENST00000440623.5_1_2:182756982-182781157:+|nuORF	ENST00000440623.5_1_2:182756982-182781157:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	530.2135009765625	2	529.813856	1057.61316	-0.9438	-0.00050004	-0.51681	-0.00027382	-1.4606	-0.00077385	529.8135066931309	58.767	0.60846	59.514	59.185	59.793	0.74714					29	11	4	0	0	0	0.30925	1	22199	22199		34.932	9.9411	1	12874000			44433	4994	32494	32759	43353	43353					0.08665701023051042
RQIISDYKLRN	11	Unmodified	_RQIISDYKLRN_					0	0	0		tr|U7SLZ6|U7SLZ6_FUSNUCompetenceproteinComFCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01997PE=4SV=1	tr|U7SLZ6|U7SLZ6_FUSNUCompetenceproteinComFCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01997PE=4SV=1	tr|U7SLZ6|U7SLZ6_FUSNUCompetenceproteinComFCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01997PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	469.668212890625	3	469.268525	1404.78375	-0.40079	-0.00018808	0.033595	1.5765E-05	-0.3672	-0.00017231	469.2685199254709	24.723	0.50548	24.723	24.547	25.053	0					24	9	3	0	0	0	0.99889	1	7089	7089		5.1984	1.3525	1	23125000			44434	29515	32495	32760	43354	43354					0.09754611674543412
RQILEPSLTT	10	Unmodified	_RQILEPSLTT_					0	0	0			REV__ENSG00000198734|ENST00000367797|F5	REV__ENSG00000198734|ENST00000367797|F5	MULTI-MSMS	A375_MHC_IP_R1	1	579.7293701171875	2	579.32987	1156.64519	0.18514	0.00010726	-0.77069	-0.00044648	-0.58555	-0.00033922	579.329311262996	127.55	1.1147	127.55	126.76	127.87	0					36	21	2	0	0	0	0.71944	1	48632	48632		3.5965	0	1	7136200	+		44435	22406	32496	32761	43355	43355					0.07313068706230297
RQISHGRAPPD	11	Unmodified	_RQISHGRAPPD_					0	0	0		FREM2|p.P3088S|1|0.24|ENSG00000150893|chr13:38880539-38880539|C/T|missense_variant	FREM2|p.P3088S|1|0.24|ENSG00000150893|chr13:38880539-38880539|C/T|missense_variant	FREM2|p.P3088S|1|0.24|ENSG00000150893|chr13:38880539-38880539|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	412.58770751953125	3	411.886415	1232.63742	0.025036	1.0312E-05	2.2173	0.00091327	2.2423	0.00092358	411.8874153861	27.729	0.40429	28.407	28.2	28.604	0.67857					13	7	3	0	0	0	0.73078	1	9438	9438		4.1166	0	1	1785200			44436	14017	32497	32762	43356	43356					0.030403542293242936
RQKQLPRRRKR	11	Unmodified	_RQKQLPRRRKR_					0	0	0			REV__ENSG00000063438|ENST00000684583|AHRR	REV__ENSG00000063438|ENST00000684583|AHRR	MSMS	A375_MHC_IP_R2	2	761.8873291015625	2	761.487291	1520.96003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.48	1	146.5	146	147	0.019913								0	0	0	0.1636	1	57045	57045		0	0	1		+		44437	16468	32498	32763	43357	43357					0.22038710418974006
RQKQNRKRRRR	11	Unmodified	_RQKQNRKRRRR_					0	0	0			REV__nc|ENSG00000164334|A1A519-4|FAM170A	REV__nc|ENSG00000164334|A1A519-4|FAM170A	MULTI-SECPEP	A375_MHC_IP_R1	1	791.0775146484375	2	791.490896	1580.96724	-0.33025	-0.00026139	0.00063616	5.0351E-07	-0.32961	-0.00026089	791.9916126712155	118.09	0.15131	118.09	118.02	118.17	0					4	2	2	0	0	0	1.0014	1	43432	43432		0.30703	0.30703	1	2915300	+		44438	27322	32499	32764	43358	43358					0.19999443019401042
RQKRRRRHRKL	11	Unmodified	_RQKRRRRHRKL_					0	0	0			REV__ENSG00000004975|ENST00000005340|DVL2	REV__ENSG00000004975|ENST00000005340|DVL2	MSMS	A375_MHC_IP_R2	2	795.2199096679688	2	795.511632	1589.00871	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.6	1	89.332	88.832	89.832	0.7318								0	0	0	0.1636	1	33718	33718		0	0	1		+		44439	16107	32500	32765	43359	43359					0.2377662377875822
RQKRRRRKHK	10	Unmodified	_RQKRRRRKHK_					0	0	0			REV__nc|ENSG00000107404|O14640-2|DVL1	REV__nc|ENSG00000107404|O14640-2|DVL1	MULTI-MSMS	A375_MHC_IP_R2	2	363.38677978515625	4	362.986901	1447.9185	-0.36064	-0.00013091	-0.35037	-0.00012718	-0.71101	-0.00025809	362.9866884032706	54.257	0.6581	55.007	54.712	55.37	0.75075					35	12	4	0	0	0	0.72607	1	20473	20473		0.62683	0	1	11123000	+		44440	17484	32501	32766	43360	43360					0.21245574450313143
RQKRRRRKHK	10	Unmodified	_RQKRRRRKHK_					0	0	0			REV__nc|ENSG00000107404|O14640-2|DVL1	REV__nc|ENSG00000107404|O14640-2|DVL1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		4	362.986901	1447.9185	0.19703	7.152E-05	-0.9467	-0.00034364	-0.74967	-0.00027212	363.2372447998513	55.369	0.66275	55.369	55.075	55.738	0	0.18084	-0.00043611	NaN	0.62683	37	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9121100	+		44441	17484	32501	32766							0.21245574450313143
RQKRRRRKHK	10	Unmodified	_RQKRRRRKHK_					0	0	0			REV__nc|ENSG00000107404|O14640-2|DVL1	REV__nc|ENSG00000107404|O14640-2|DVL1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		4	362.986901	1447.9185	-0.36064	-0.00013091	-0.35037	-0.00012718	-0.71101	-0.00025809	362.9866884032706	54.257	0.6581	55.007	54.712	55.37	0.75075	-0.18084	0.00042974	NaN	0.62683	35	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11123000	+		44442	17484	32501	32766							0.21245574450313143
RQKRRRRRMLW	11	Unmodified	_RQKRRRRRMLW_					0	0	0			REV__ENST00000579674.1_1_17:27898877-27899117:+|nuORF	REV__ENST00000579674.1_1_17:27898877-27899117:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	548.4005126953125	3	547.998821	1640.97463	-0.62459	-0.00034227	4.221	0.0023131	3.5964	0.0019708	548.0009158355758	86.119	0.4073	86.852	86.693	87.1	0.733					10	7	2	0	0	0	1.0014	1	32785	32785		0.50596	0.50596	1	2135000	+		44443	20770	32502	32767	43361	43361					0.17978459295500215
RQLALRKKLP	10	Unmodified	_RQLALRKKLP_					0	0	0		USP17L2|p.P64L|1|0.26|ENSG00000223443|chr8:12138570-12138570|G/A|missense_variant	USP17L2|p.P64L|1|0.26|ENSG00000223443|chr8:12138570-12138570|G/A|missense_variant	USP17L2|p.P64L|1|0.26|ENSG00000223443|chr8:12138570-12138570|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	611.9859008789062	2	611.908956	1221.80336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.58	1	119.19	118.69	119.69	0.60909								0	0	0	0.15591	1	45045	45045		1.6526	0	1				44444	30125	32503	32768	43362	43362					0.20133032475973778
RQLEKLKEV	9	Unmodified	_RQLEKLKEV_					0	0	0		ENST00000345117.2_1_8:42693107-42698298:-|nuORF;ENSG00000131931|ENST00000254250|THAP1	ENST00000345117.2_1_8:42693107-42698298:-|nuORF	ENST00000345117.2_1_8:42693107-42698298:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	381.9678039550781	3	381.567912	1141.68191	0.47545	0.00018142	-2.4935	-0.00095142	-2.018	-0.00077001	381.56771498851367	20.604	0.45902	20.604	20.334	20.793	0					13	8	2	0	0	0	0.57177	1	5363	5363		16.275	5.2093	1	1290700			44445	4358	32504	32769	43363	43363					0.11673365322781137
RQLEQELHKW	10	Unmodified	_RQLEQELHKW_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1;nc|ENSG00000187778|Q96EZ8-4|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	MULTI-MSMS	A375_MHC_IP_R1	1	456.6454772949219	3	456.245721	1365.71533	-0.25672	-0.00011713	-0.49889	-0.00022762	-0.75562	-0.00034475	456.24557423338814	31.895	0.3572	31.895	31.718	32.075	0					11	6	2	0	0	0	0.31188	1	10286	10286		39.413	31.126	1	3878300			44446	8856	32505	32770	43364	43364					0.047103670946853526
RQLFHEYKRRY	11	Unmodified	_RQLFHEYKRRY_					0	0	0			REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H	REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H	MSMS	A375_MHC_IP_R1	1	798.4318237304688	2	798.431316	1594.84808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.29	1	123.29	122.79	123.79	0								0	0	0	0.16265	1	46048	46048		4.897	3.7037	1		+		44447	21290	32506	32771	43365	43365					0.07444811551340536
RQLFRRVRERF	11	Unmodified	_RQLFRRVRERF_					0	0	0		ENST00000523568.1_7:102228019-102246337:-|nuORF;nc|ENSG00000105808|O43374-2|RASA4;ENSG00000170667|ENST00000465829|RASA4B;ENSG00000105808|ENST00000262940|RASA4	ENST00000523568.1_7:102228019-102246337:-|nuORF	ENST00000523568.1_7:102228019-102246337:-|nuORF	MSMS	A375_MHC_IP_R1	1	521.6713256835938	3	521.642809	1561.9066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.91	1	85.91	85.41	86.41	0								0	0	0	0.16352	1	31492	31492		0.40827	0.31342	1				44448	13044	32507	32772	43366	43366					0.14811912916479741
RQLGRPKPL	9	Unmodified	_RQLGRPKPL_					0	0	0			REV__SRRM2|p.S1764L|1|0.37|ENSG00000167978|chr16:2765819-2765819|C/T|missense_variant	REV__SRRM2|p.S1764L|1|0.37|ENSG00000167978|chr16:2765819-2765819|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	355.5791015625	3	355.561092	1063.66145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.863	1	39.637	39.137	40.137	0.77451								0	0	0	0.15486	1	14326	14326		2.7352	0.10396	1		+		44449	28046	32508	32773	43367	43367					0.13216239453663547
RQLKKAKLIK	10	Unmodified	_RQLKKAKLIK_					0	0	0			REV__ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	REV__ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	MSMS	A375_MHC_IP_R2	2	613.4259033203125	2	613.426982	1224.83941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.12	1	120.65	120.15	121.15	0.5321								0	0	0	0.15591	1	45798	45798		1.6526	1.1943	1		+		44450	15463	32509	32774	43368	43368					0.2359848965281799
RQLLGFEAKLE	11	Unmodified	_RQLLGFEAKLE_					0	0	0			REV__ENSG00000122970|ENST00000242591|IFT81	REV__ENSG00000122970|ENST00000242591|IFT81	MSMS	A375_MHC_IP_R1	1	435.1661071777344	3	435.250472	1302.72959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.828	1	76.828	76.328	77.328	0								0	0	0	0.16224	1	28012	28012		7.0371	0.84524	1		+		44451	18226	32510	32775	43369	43369					0.09033019522985342
RQLLKRKRRKF	11	Unmodified	_RQLLKRKRRKF_					0	0	0			REV__CSNK1G2|p.S410L|1|0.33|ENSG00000133275|chr19:1980184-1980184|C/T|missense_variant	REV__CSNK1G2|p.S410L|1|0.33|ENSG00000133275|chr19:1980184-1980184|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	765.001220703125	2	765.004785	1527.99502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.44	1	115.15	114.65	115.65	0.70985								0	0	0	0.1636	1	43142	43142		0	0	1		+		44452	15927	32511	32776	43370	43370					0.2521395322692115
RQLQHDREEFY	11	Unmodified	_RQLQHDREEFY_					0	0	0		nc|ENSG00000165699|Q92574-2|TSC1;ENSG00000165699|ENST00000298552|TSC1	nc|ENSG00000165699|Q92574-2|TSC1	nc|ENSG00000165699|Q92574-2|TSC1	MSMS	A375_MHC_IP_R1	1	507.6319274902344	3	507.57954	1519.71679	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.051	1	77.051	76.551	77.551	0								0	0	0	0.16309	1	28099	28099		2.6312	1.4164	1				44453	6982	32512	32777	43371	43371					-0.022280436071696386
RQLRMQKRVFY	11	Unmodified	_RQLRMQKRVFY_					0	0	0			REV__ASPM|p.L1743F|1|0.49|ENSG00000066279|chr1:197104024-197104024|G/A|missense_variant	REV__ASPM|p.L1743F|1|0.49|ENSG00000066279|chr1:197104024-197104024|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	508.9697265625	3	508.957517	1523.85072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.88	1	21.88	21.38	22.38	0								0	0	0	0.16358	1	5811	5811		0.094841	0	1		+		44454	15466	32513	32778	43372	43372					0.10974943684641403
RQMKKLVWDLF	11	Unmodified	_RQMKKLVWDLF_					0	0	0			REV__MPPED1|p.P256L|1|0.24|ENSG00000186732|chr22:43502662-43502662|C/T|missense_variant	REV__MPPED1|p.P256L|1|0.24|ENSG00000186732|chr22:43502662-43502662|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	489.0104064941406	3	488.611235	1462.81188	-0.5191	-0.00025364	-0.61674	-0.00030135	-1.1358	-0.00055498	488.6106588309769	132.57	1.019	132.76	132.2	133.22	0.18953					56	19	3	0	0	0	0.73795	1	52224	52224		1.3296	0.11481	1	18875000	+		44455	27032	32514	32779	43373	43373					0.09898218330272357
RQPDSGISSI	10	Unmodified	_RQPDSGISSI_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-SECPEP	A375_MHC_IP_R1	1	530.675048828125	2	530.275095	1058.53564	-0.57596	-0.00030542	-0.27436	-0.00014549	-0.85032	-0.0004509	530.274984778307	34.738	0.71038	34.738	34.456	35.167	0					35	13	4	0	0	0	0.15631	1	11443	11443		78.06	3.8608	1	49509000			44456	6741	32515	32780	43374	43374					0.008710630869245506
RQPDSGISSI	10	Unmodified	_RQPDSGISSI_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	A375_MHC_IP_R2	2	531.176025390625	2	530.275095	1058.53564	-1.0367	-0.00054973	-0.065301	-3.4627E-05	-1.102	-0.00058436	530.2750677704714	34.025	0.76147	34.778	34.399	35.16	0.75225					36	14	4	0	0	0	0.1298	1	12183	12183		57.249	3.8451	1	53236000			44457	6741	32515	32780	43375	43375					0.008710630869245506
RQPRSHLNH	9	Unmodified	_RQPRSHLNH_					0	0	0			REV__ENSG00000162885|ENST00000366600|B3GALNT2	REV__ENSG00000162885|ENST00000366600|B3GALNT2	MULTI-MSMS	A375_MHC_IP_R2	2	382.94146728515625	3	382.2076	1143.60097	0.022767	8.7017E-06	-2.2276	-0.00085141	-2.2048	-0.00084271	382.54164204039887	68.239	0.8112	68.975	68.714	69.525	0.73511					23	14	3	0	0	0	0.69884	1	25882	25882		7.1017	0.47827	1	1196400	+		44458	20317	32516	32781	43376	43376					0.034915221232722615
RQPTLKEFG	9	Unmodified	_RQPTLKEFG_					0	0	0		nc|ENSG00000152214|Q99578-2|RIT2	nc|ENSG00000152214|Q99578-2|RIT2	nc|ENSG00000152214|Q99578-2|RIT2	MULTI-SECPEP	A375_MHC_IP_R1	1	358.91339111328125	3	359.201341	1074.58219	-0.054542	-1.9592E-05	-4.1889	-0.0015047	-4.2435	-0.0015243	359.198580930263	24.427	0.86054	24.427	23.94	24.801	0					31	16	4	0	0	0	0.73926	1	6823	6823		17.443	3.0373	1	5492200			44459	14682	32517	32782	43377	43377					0.047885477088584594
RQPYSEPPE	9	Unmodified	_RQPYSEPPE_					0	0	0			REV__nc|ENSG00000128829|Q9P2K8-3|EIF2AK4	REV__nc|ENSG00000128829|Q9P2K8-3|EIF2AK4	MULTI-SECPEP	A375_MHC_IP_R1	1	551.514404296875	2	551.76182	1101.50909	-0.27153	-0.00014982	-0.50797	-0.00028028	-0.7795	-0.0004301	551.7615165504011	21.682	0.55936	21.682	21.301	21.86	0					16	10	2	0	0	0	0.79535	1	5711	5711		6.2058	0.9089	1	1166700	+		44460	18470	32518	32783	43378	43378					-0.03760625804443407
RQQELIEKQRR	11	Unmodified	_RQQELIEKQRR_					0	0	0		ENSG00000172775|ENST00000309137|PSME3IP1	ENSG00000172775|ENST00000309137|PSME3IP1	ENSG00000172775|ENST00000309137|PSME3IP1	MULTI-MSMS	A375_MHC_IP_R2	2	495.6867370605469	3	495.286579	1482.83791	-0.3708	-0.00018365	0.91377	0.00045258	0.54297	0.00026892	495.2869856568717	134.38	0.50972	134.52	134.34	134.85	0.13901					18	9	2	0	0	0	0.73818	1	52897	52897		1.1098	0.6038	1	3320400			44461	7735	32519	32784	43379	43379					0.11580203826110846
RQQELIEKQRR	11	Unmodified	_RQQELIEKQRR_					0	0	0		ENSG00000172775|ENST00000309137|PSME3IP1	ENSG00000172775|ENST00000309137|PSME3IP1	ENSG00000172775|ENST00000309137|PSME3IP1	MULTI-MATCH	A375_MHC_IP_R1	1		3	495.286579	1482.83791	-0.64706	-0.00032048	0.86028	0.00042609	0.21322	0.00010561	495.62142890619583	134.4	0.50528	134.4	134.27	134.78	0	-0.061973	-4.5884E-05	NaN	1.1098	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2211600			44462	7735	32519	32784							0.11580203826110846
RQQFLDKAY	9	Unmodified	_RQQFLDKAY_					0	0	0			REV__HS6ST3|p.E409K|2|0.38|ENSG00000185352|chr13:96833007-96833007|G/A|missense_variant	REV__HS6ST3|p.E409K|2|0.38|ENSG00000185352|chr13:96833007-96833007|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	585.208740234375	2	584.809105	1167.60366	-0.49374	-0.00028874	0.049417	2.89E-05	-0.44432	-0.00025984	584.8091664717662	31.69	0.30536	32.427	32.249	32.555	0.73691					7	5	2	0	0	0	0.76642	1	11262	11262		13.042	13.042	1	2799200	+		44463	18954	32520	32785	43380	43380					0.026559327375707653
RQQGSTRA	8	Unmodified	_RQQGSTRA_					0	0	0			REV__ENST00000297205.6_1_7:89783709-89789076:+|nuORF	REV__ENST00000297205.6_1_7:89783709-89789076:+|nuORF	MSMS	A375_MHC_IP_R1	1	452.3324890136719	2	452.24139	902.468226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.4	1	143.4	142.9	143.9	0								0	0	0	0.16876	1	55012	55012		2.3027	0	1		+		44464	23395	32521	32786	43381	43381					0.013090776665990234
RQQILKELEAR	11	Unmodified	_RQQILKELEAR_					0	0	0			REV__SAMD1|p.P333Dfs*27|1|0.12|ENSG00000141858|chr19:14088912-14088913|-/CG|frameshift_variant	REV__SAMD1|p.P333Dfs*27|1|0.12|ENSG00000141858|chr19:14088912-14088913|-/CG|frameshift_variant	MSMS	A375_MHC_IP_R2	2	692.3452758789062	2	692.406975	1382.7994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.295	1	98.051	97.551	98.551	0.75586								0	0	0	0.16341	1	36931	36931		0.96228	0.50394	1		+		44465	19287	32522	32787	43382	43382					0.12330898191612505
RQQRFRFTERR	11	Unmodified	_RQQRFRFTERR_					0	0	0			REV__MLF2|p.S201F|1|0.48|ENSG00000089693|chr12:6748940-6748940|G/A|missense_variant	REV__MLF2|p.S201F|1|0.48|ENSG00000089693|chr12:6748940-6748940|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	790.83740234375	2	790.437464	1578.86037	-0.4066	-0.00032139	0.99891	0.00078957	0.59231	0.00046818	790.4378131486674	100.67	0.3042	100.67	100.53	100.84	0					8	5	2	0	0	0	0.73822	1	37034	37034		1.0715	0.72083	1	2010500	+		44466	27017	32523	32788	43383	43383					0.09409848014411182
RQRAQLQWKKK	11	Unmodified	_RQRAQLQWKKK_					0	0	0			REV__ENSG00000177084|ENST00000320574|POLE	REV__ENSG00000177084|ENST00000320574|POLE	MULTI-MSMS	A375_MHC_IP_R1	1	735.843017578125	2	735.444226	1468.8739	-0.89834	-0.00066068	0.092403	6.7957E-05	-0.80594	-0.00059272	735.4436536486805	148.85	2.1201	148.85	147.8	149.92	0					186	61	5	0	0	0	0.73902	1	57020	57020		0.30703	0	1	1370000	+		44467	21436	32524	32789	43384	43384					0.15821705793609908
RQRFTVIANT	10	Unmodified	_RQRFTVIANT_					0	0	0		ENSG00000150783|ENST00000280358|TEX12	ENSG00000150783|ENST00000280358|TEX12	ENSG00000150783|ENST00000280358|TEX12	MULTI-MSMS	A375_MHC_IP_R1	1	403.2470703125	3	402.563161	1204.66765	-0.58089	-0.00023384	0.78064	0.00031426	0.19976	8.0414E-05	402.563325469044	24.22	0.5555	24.22	24.042	24.597	0					25	10	3	0	0	0	0.71076	1	6777	6777		7.4771	0.37534	1	20998000			44468	5864	32525	32790	43385	43385					0.07350712894503886
RQRKLEEER	9	Unmodified	_RQRKLEEER_					0	0	0			REV__nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	REV__nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	MULTI-SECPEP	A375_MHC_IP_R2	2	622.7461547851562	2	622.346917	1242.67928	-0.76108	-0.00047366	0.18088	0.00011257	-0.5802	-0.00036108	622.3469209426207	129.94	2.0281	130.16	129.59	131.62	0.21419					75	39	2	0	0	0	0.79191	1	50972	50972		6.7232	0.51738	1	84206000	+		44469	27308	32526	32791	43386	43386					0.06764909917865225
RQRLGGGPWGQ	11	Unmodified	_RQRLGGGPWGQ_					0	0	0			REV__ENST00000586561.5_1_19:12848284-12848431:+|nuORF	REV__ENST00000586561.5_1_19:12848284-12848431:+|nuORF	MSMS	A375_MHC_IP_R2	2	404.6297912597656	3	404.551256	1210.63194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.928	1	19.531	19.031	20.031	0.60308								0	0	0	0.16216	1	5670	5670		7.4771	1.2427	1		+		44470	26393	32527	32792	43387	43387					0.03504675437534388
RQRLKKKKKKP	11	Unmodified	_RQRLKKKKKKP_					0	0	0			REV__ENST00000538078.1_1_12:7592002-7592584:-|nuORF	REV__ENST00000538078.1_1_12:7592002-7592584:-|nuORF	MSMS	A375_MHC_IP_R1	1	479.98004150390625	3	479.999933	1436.97797	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.352	1	19.352	18.852	19.852	0								0	0	0	0.1636	1	4731	4731		0	0	1		+		44471	22170	32528	32793	43388	43388					0.2769603262113378
RQRLLFRRERR	11	Unmodified	_RQRLLFRRERR_					0	0	0			REV__ENST00000260324.11_1_15:45927092-45951106:+|nuORF	REV__ENST00000260324.11_1_15:45927092-45951106:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	793.8840942382812	2	793.484748	1584.95494	-0.78758	-0.00062493	-0.20433	-0.00016214	-0.99191	-0.00078706	793.4844676166942	143.13	0.55551	143.13	142.74	143.29	0					25	10	3	0	0	0	0.73902	1	54885	54885		0.30703	0	1	2133600	+		44472	23173	32529	32794	43389	43389					0.1858640655639192
RQRLLFRRERR	11	Unmodified	_RQRLLFRRERR_					0	0	0			REV__ENST00000260324.11_1_15:45927092-45951106:+|nuORF	REV__ENST00000260324.11_1_15:45927092-45951106:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	793.484748	1584.95494	-0.78758	-0.00062493	-0.20433	-0.00016214	-0.99191	-0.00078706	793.4844676166942	143.13	0.55551	143.13	142.74	143.29	0	-0.033544	-0.00025795	NaN	0.30703	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2133600	+		44473	23173	32529	32794							0.1858640655639192
RQRLNGRPA	9	Unmodified	_RQRLNGRPA_					0	0	0			REV__ENST00000288985.11_1_9:98638280-98643193:+|nuORF	REV__ENST00000288985.11_1_9:98638280-98643193:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	534.7120971679688	2	534.312681	1066.61081	-0.59433	-0.00031756	-0.0073513	-3.9279E-06	-0.60168	-0.00032149	534.3126377355542	137.11	0.41165	137.22	137.07	137.48	0.11134					13	7	2	0	0	0	0.72985	1	53841	53841		4.3292	4.3292	1	1969900	+		44474	23349	32530	32795	43390	43390					0.08016710128640625
RQRLWVFERYR	11	Unmodified	_RQRLWVFERYR_					0	0	0			REV__ENSG00000086300|ENST00000338523|SNX10	REV__ENSG00000086300|ENST00000338523|SNX10	MULTI-MSMS	A375_MHC_IP_R1	1	537.6775512695312	3	536.967181	1607.87971	-0.59614	-0.00032011	0.69849	0.00037507	0.10235	5.4961E-05	536.9677316818307	20.441	0.6623	20.441	20.079	20.742	0					30	12	3	0	0	0	0.73828	1	5159	5159		1.0136	0.93022	1	8376200	+		44475	16853	32531	32796	43391	43391					0.10008804305311969
RQRLWVFERYR	11	Unmodified	_RQRLWVFERYR_					0	0	0			REV__ENSG00000086300|ENST00000338523|SNX10	REV__ENSG00000086300|ENST00000338523|SNX10	MULTI-SECPEP	A375_MHC_IP_R1	1	537.3674926757812	3	536.967181	1607.87971	-0.59614	-0.00032011	0.69849	0.00037507	0.10235	5.4961E-05	536.9677316818307	20.441	0.6623	20.441	20.079	20.742	0					30	12	3	0	0	0	1.0012	1	5198	5198		1.2148	0.84816	1	8376200	+		44476	16853	32531	32796	43392	43392					0.10008804305311969
RQRQRRRWLVR	11	Unmodified	_RQRQRRRWLVR_					0	0	0			REV__ENST00000263754.4_1_3:20081618-20081714:+|nuORF	REV__ENST00000263754.4_1_3:20081618-20081714:+|nuORF	MSMS	A375_MHC_IP_R2	2	805.8822021484375	2	805.490365	1608.96618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.16	1	149.17	148.67	149.67	0.018707								0	0	0	0.1636	1	57900	57900		0	0	1		+		44477	23229	32532	32797	43393	43393					0.18605228650540084
RQRREFREKRL	11	Unmodified	_RQRREFREKRL_					0	0	0		nc|ENSG00000104859|Q8N2M8-3|CLASRP;nc|ENSG00000104859|Q8N2M8-4|CLASRP;ENSG00000104859|ENST00000221455|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-MSMS	A375_MHC_IP_R1	1	525.7092895507812	3	525.309718	1572.90732	-0.7478	-0.00039283	-0.05086	-2.6717E-05	-0.79866	-0.00041955	525.3095902274521	134.19	1.2184	134.19	133.3	134.52	0					116	23	6	0	0	0	0.73891	1	51505	51505		0.40827	0	1	156730000			44478	2543	32533	32798	43394	43394					0.14378707565538207
RQRREFREKRL	11	Unmodified	_RQRREFREKRL_					0	0	0		nc|ENSG00000104859|Q8N2M8-3|CLASRP;nc|ENSG00000104859|Q8N2M8-4|CLASRP;ENSG00000104859|ENST00000221455|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-MSMS	A375_MHC_IP_R1	1	525.70947265625	3	525.309718	1572.90732	-0.76034	-0.00039941	0.10249	5.3838E-05	-0.65785	-0.00034557	525.3096823915353	134.9	3.5294	134.9	134.52	138.05	0					265	68	7	0	0	0	0.73886	4	52358	51944;52358;52559;52754		0.45452	0.35968	1	327960000			44479	2543	32533	32798	43395;43396;43397;43398	43396					0.14378707565538207
RQRREFREKRL	11	Unmodified	_RQRREFREKRL_					0	0	0		nc|ENSG00000104859|Q8N2M8-3|CLASRP;nc|ENSG00000104859|Q8N2M8-4|CLASRP;ENSG00000104859|ENST00000221455|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-MSMS	A375_MHC_IP_R1	1	526.043701171875	3	525.309718	1572.90732	-0.82763	-0.00043476	0.037893	1.9906E-05	-0.78973	-0.00041485	525.3095652827312	140.1	1.7896	140.1	139.01	140.8	0					59	34	3	0	0	0	0.73924	1	53552	53552		0.094841	0	1	3371100			44480	2543	32533	32798	43399	43399					0.14378707565538207
RQRREFREKRL	11	Unmodified	_RQRREFREKRL_					0	0	0		nc|ENSG00000104859|Q8N2M8-3|CLASRP;nc|ENSG00000104859|Q8N2M8-4|CLASRP;ENSG00000104859|ENST00000221455|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-MSMS	A375_MHC_IP_R2	2	526.0435791015625	3	525.309718	1572.90732	-0.42449	-0.00022299	0.35983	0.00018902	-0.064658	-3.3965E-05	525.6439038727733	132.79	0.76353	132.96	132.59	133.35	0.16487					29	14	4	0	0	0	0.73891	1	52275	52275		0.40827	0.31342	1	5659000			44481	2543	32533	32798	43400	43400					0.14378707565538207
RQRREFREKRL	11	Unmodified	_RQRREFREKRL_					0	0	0		nc|ENSG00000104859|Q8N2M8-3|CLASRP;nc|ENSG00000104859|Q8N2M8-4|CLASRP;ENSG00000104859|ENST00000221455|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-MSMS	A375_MHC_IP_R2	2	526.043701171875	3	525.309718	1572.90732	-0.36446	-0.00019146	-0.061685	-3.2404E-05	-0.42615	-0.00022386	525.3096229243879	134.84	4.2336	134.98	134.55	138.78	0.13901					268	82	7	0	0	0	0.73924	1	53607	53607		0.094841	0	1	321760000			44482	2543	32533	32798	43401	43401					0.14378707565538207
RQRREFREKRL	11	Unmodified	_RQRREFREKRL_					0	0	0		nc|ENSG00000104859|Q8N2M8-3|CLASRP;nc|ENSG00000104859|Q8N2M8-4|CLASRP;ENSG00000104859|ENST00000221455|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-MSMS	A375_MHC_IP_R2	2	525.6943969726562	3	525.309718	1572.90732	-0.30064	-0.00015793	-0.3979	-0.00020902	-0.69854	-0.00036695	525.3094662844633	139.49	0.75208	139.55	139.15	139.9	0.059906					25	14	2	0	0	0	0.73924	1	54538	54538		0.094841	0	1	1470900			44483	2543	32533	32798	43402	43402					0.14378707565538207
RQRRGCVSL	9	Unmodified	_RQRRGCVSL_					0	0	0			REV__ENST00000219235.4_1_16:57399345-57399441:+|nuORF	REV__ENST00000219235.4_1_16:57399345-57399441:+|nuORF	MSMS	A375_MHC_IP_R1	1	358.91339111328125	3	358.86982	1073.58763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.224	1	24.224	23.724	24.724	0								0	0	0	0.15411	1	6823	6823		10.151	0.6066	1		+		44484	23045	32534	32799	43403	43403					0.053779480196681106
RQRWRWAWL	9	Unmodified	_RQRWRWAWL_					0	0	0			REV__ENST00000478401.1_1_9:100872512-100881310:-|nuORF	REV__ENST00000478401.1_1_9:100872512-100881310:-|nuORF	MSMS	A375_MHC_IP_R2	2	679.495849609375	2	679.373072	1356.73159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.596	1	79.341	78.841	79.841	0.74474								0	0	0	0.15486	1	29846	29846		4.3292	0.73274	1		+		44485	25215	32535	32800	43404	43404					0.06749537842119935
RQRYNYWFRHI	11	Unmodified	_RQRYNYWFRHI_					0	0	0			REV__nc|ENSG00000171509|Q9HBX9-4|RXFP1	REV__nc|ENSG00000171509|Q9HBX9-4|RXFP1	MULTI-SECPEP	A375_MHC_IP_R2	2	546.2291259765625	3	546.951531	1637.83276	-0.55866	-0.00030556	-0.83511	-0.00045676	-1.3938	-0.00076232	547.2839567888832	94.531	0.15096	95.276	95.173	95.324	0.74473					4	2	2	0	0	0	1.0015	1	35898	35898		0.094841	0	1	421070	+		44486	27358	32536	32801	43405	43405					0.039359447541528425
RQRYNYWFRYI	11	Unmodified	_RQRYNYWFRYI_					0	0	0			REV__RXFP1|p.H693Y|1|0.45|ENSG00000171509|chr4:158651858-158651858|C/T|missense_variant	REV__RXFP1|p.H693Y|1|0.45|ENSG00000171509|chr4:158651858-158651858|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	832.927001953125	2	832.925866	1663.83718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.725	1	78.725	78.225	79.225	0								0	0	0	0.1636	1	28730	28730		0	0	1		+		44487	27903	32537	32802	43406	43406					0.03181409177068417
RQRYNYWFRYI	11	Unmodified	_RQRYNYWFRYI_					0	0	0			REV__RXFP1|p.H693Y|1|0.45|ENSG00000171509|chr4:158651858-158651858|C/T|missense_variant	REV__RXFP1|p.H693Y|1|0.45|ENSG00000171509|chr4:158651858-158651858|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	832.9273681640625	2	832.925866	1663.83718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.3	1	105.3	104.8	105.8	0								0	0	0	0.1636	1	38659	38659		0	0	1		+		44488	27903	32537	32802	43407	43407					0.03181409177068417
RQSRRRPPLTS	11	Unmodified	_RQSRRRPPLTS_					0	0	0			REV__ENST00000482343.5_1_1:149907586-149908569:-|nuORF	REV__ENST00000482343.5_1_1:149907586-149908569:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	452.33258056640625	3	451.932248	1352.77491	-0.53571	-0.0002421	0.34351	0.00015524	-0.1922	-8.6862E-05	451.9325900285543	141.71	1.8445	141.71	140.44	142.29	0					60	35	3	0	0	0	0.73886	1	54350	54350		0.45452	0.29519	1	910110	+		44489	25278	32538	32803	43408	43408					0.11263682828757737
RQSTILKRW	9	Unmodified	_RQSTILKRW_					0	0	0		nc|ENSG00000115762|Q96CS7-4|PLEKHB2;nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	MULTI-SECPEP	A375_MHC_IP_R1	1	397.1216125488281	3	396.571768	1186.69348	-0.23912	-9.4828E-05	0.20939	8.3038E-05	-0.029731	-1.179E-05	396.5718361936065	27.709	0.50521	27.709	27.432	27.937	0					19	9	3	0	0	0	0.20451	1	8438	8438		46.022	21.141	1	5663500			44490	3339	32539	32804	43409	43409					0.107596071368107
RQSTILKRW	9	Unmodified	_RQSTILKRW_					0	0	0		nc|ENSG00000115762|Q96CS7-4|PLEKHB2;nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	MULTI-SECPEP	A375_MHC_IP_R2	2	396.9716491699219	3	396.571768	1186.69348	-0.31039	-0.00012309	0.49035	0.00019446	0.17996	7.1367E-05	396.571919743383	26.912	0.46055	27.572	27.313	27.773	0.65992					19	8	3	0	0	0	0.30925	1	9144	9144		39.213	19.587	1	6126900			44491	3339	32539	32804	43410	43410					0.107596071368107
RQTERGMERQR	11	Unmodified	_RQTERGMERQR_					0	0	0		ENST00000367029.4_1_1:209849344-209849512:+|nuORF	ENST00000367029.4_1_1:209849344-209849512:+|nuORF	ENST00000367029.4_1_1:209849344-209849512:+|nuORF	MSMS	A375_MHC_IP_R2	2	482.9087219238281	3	482.916269	1445.72698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.59	1	30.288	29.788	30.788	0.69872								0	0	0	0.16223	1	10342	10342		3.5927	0.74939	1				44492	11074	32540	32805	43411	43411					0.021942408463928587
RQTGGGSG	8	Unmodified	_RQTGGGSG_					0	0	0		ENST00000372086.3_1_1:45956634-45956796:-|nuORF	ENST00000372086.3_1_1:45956634-45956796:-|nuORF	ENST00000372086.3_1_1:45956634-45956796:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	360.6065673828125	2	360.175184	718.335815	0.028681	1.033E-05	0.94409	0.00034004	0.97277	0.00035037	360.1754515879314	99.38	1.067	100.14	99.708	100.78	0.75977					32	20	2	0	0	0	0.77842	1	37775	37775		0.69038	0	1	6224700			44493	11190	32541	32806	43412	43412					-0.03461947070172755
RQTRETFVSP	10	Unmodified	_RQTRETFVSP_					0	0	0			REV__ENST00000554270.5_1_14:88936247-89016761:-|nuORF	REV__ENST00000554270.5_1_14:88936247-89016761:-|nuORF	MSMS	A375_MHC_IP_R1	1	610.8233032226562	2	610.822744	1219.63093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.57	1	122.57	122.07	123.07	0								0	0	0	0.15382	1	45631	45631		13.906	6.6168	1		+		44494	16580	32542	32807	43413	43413					0.029904162779530452
RQVEKAWAL	9	Unmodified	_RQVEKAWAL_					0	0	0		nc|ENSG00000068120|Q13057-2|COASY;ENSG00000068120|ENST00000393818|COASY;ENST00000591753.1_2_17:40715869-40717983:+|nuORF	nc|ENSG00000068120|Q13057-2|COASY	nc|ENSG00000068120|Q13057-2|COASY	MULTI-SECPEP	A375_MHC_IP_R1	1	367.9453430175781	3	367.545219	1099.61383	0.37923	0.00013938	-0.087385	-3.2118E-05	0.29184	0.00010726	367.5452060092653	39.281	0.60985	39.281	39.033	39.643	0					18	11	2	0	0	0	0.11849	1	13419	13419		57.108	27.67	1	4779900			44495	1454	32543	32808	43414	43414					0.06800540462791105
RQVEKAWAL	9	Unmodified	_RQVEKAWAL_					0	0	0		nc|ENSG00000068120|Q13057-2|COASY;ENSG00000068120|ENST00000393818|COASY;ENST00000591753.1_2_17:40715869-40717983:+|nuORF	nc|ENSG00000068120|Q13057-2|COASY	nc|ENSG00000068120|Q13057-2|COASY	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2139892578125	2	550.81419	1099.61383	-0.44141	-0.00024314	0.14197	7.8199E-05	-0.29944	-0.00016494	550.8141566694578	39.314	0.50794	39.314	39.033	39.541	0					24	9	4	0	0	0	0.34746	1	13413	13413		24.991	12.75	1	11022000			44496	1454	32543	32808	43415	43415					0.06800540462791105
RQVEKAWAL	9	Unmodified	_RQVEKAWAL_					0	0	0		nc|ENSG00000068120|Q13057-2|COASY;ENSG00000068120|ENST00000393818|COASY;ENST00000591753.1_2_17:40715869-40717983:+|nuORF	nc|ENSG00000068120|Q13057-2|COASY	nc|ENSG00000068120|Q13057-2|COASY	MULTI-SECPEP	A375_MHC_IP_R2	2	367.9452819824219	3	367.545219	1099.61383	-0.16979	-6.2405E-05	0.33592	0.00012347	0.16614	6.1063E-05	367.54530958603095	38.325	0.86758	39.099	38.534	39.401	0.77451					26	16	3	0	0	0	0.20451	1	14095	14095		39.213	8.5096	1	5161900			44497	1454	32543	32808	43416	43416					0.06800540462791105
RQVEKAWAL	9	Unmodified	_RQVEKAWAL_					0	0	0		nc|ENSG00000068120|Q13057-2|COASY;ENSG00000068120|ENST00000393818|COASY;ENST00000591753.1_2_17:40715869-40717983:+|nuORF	nc|ENSG00000068120|Q13057-2|COASY	nc|ENSG00000068120|Q13057-2|COASY	MULTI-SECPEP	A375_MHC_IP_R2	2	551.2139282226562	2	550.81419	1099.61383	-1.1334	-0.00062428	0.45803	0.00025229	-0.67535	-0.00037199	550.8143425208796	38.292	0.55832	39.066	38.843	39.401	0.77451					23	10	3	0	0	0	0.16764	1	14084	14084		60.074	20.117	1	7081800			44498	1454	32543	32808	43417	43417					0.06800540462791105
RQVEKRREKKE	11	Unmodified	_RQVEKRREKKE_					0	0	0		ENSG00000261649|ENST00000567390|GOLGA6L7	ENSG00000261649|ENST00000567390|GOLGA6L7	ENSG00000261649|ENST00000567390|GOLGA6L7	MULTI-SECPEP	A375_MHC_IP_R1	1	495.525634765625	3	495.958462	1484.85356	-0.7396	-0.00036681	0.20055	9.9462E-05	-0.53905	-0.00026735	496.2926050052176	145.82	0.33932	145.82	145.62	145.96	0					52	37	2	0	0	0	1.0015	1	55853	55853		0.094841	0	1	114280			44499	9941	32544	32809	43418	43418					0.13052490343170575
RQVKRKWLWVF	11	Unmodified	_RQVKRKWLWVF_					0	0	0		ENST00000446176.6_1_9:132650909-132651179:-|nuORF	ENST00000446176.6_1_9:132650909-132651179:-|nuORF	ENST00000446176.6_1_9:132650909-132651179:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	516.37744140625	3	515.977017	1544.90922	-0.84045	-0.00043365	0.86022	0.00044386	0.019775	1.0203E-05	515.9781814522671	136.77	1.3858	136.77	136.36	137.74	0					62	26	5	0	0	0	0.73934	1	52678	52678		0	0	1	4058100			44500	12031	32545	32810	43419	43419					0.1585636832144246
RQVNYIQFVST	11	Unmodified	_RQVNYIQFVST_					0	0	0			REV__ENSG00000256870|ENST00000536262|SLC5A8	REV__ENSG00000256870|ENST00000536262|SLC5A8	MULTI-SECPEP	A375_MHC_IP_R1	1	451.6585693359375	3	452.241976	1353.7041	-0.45508	-0.00020581	0.76782	0.00034724	0.31273	0.00014143	452.24236110446776	38.259	1.0213	38.259	37.556	38.577	0					37	19	3	0	0	0	0.99916	1	12859	12859		4.4062	2.951	1	2968200	+		44501	22886	32546	32811	43420	43420					0.04139545000543876
RQVSEDGQPKG	11	Unmodified	_RQVSEDGQPKG_					0	0	0		nc|ENSG00000182670|P53804-3|TTC3;nc|ENSG00000182670|P53804-2|TTC3;ENSG00000182670|ENST00000418766|TTC3;ENST00000472398.5_1_21:38529111-38558109:+|nuORF	nc|ENSG00000182670|P53804-3|TTC3	nc|ENSG00000182670|P53804-3|TTC3	MSMS	A375_MHC_IP_R1	1	600.7011108398438	2	600.802008	1199.58946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.115	1	64.115	63.615	64.615	0								0	0	0	0.14288	1	23192	23192		24.991	5.629	1				44502	8429	32547	32812	43421	43421					-0.0023476448138808337
RQWDKQQY	8	Unmodified	_RQWDKQQY_					0	0	0			REV__ENSG00000144468|ENST00000392062|RHBDD1	REV__ENSG00000144468|ENST00000392062|RHBDD1	MULTI-SECPEP	A375_MHC_IP_R1	1	576.2161865234375	2	576.283254	1150.55196	-0.1243	-7.1631E-05	-0.15845	-9.131E-05	-0.28274	-0.00016294	576.2831686891711	63.383	0.9229	63.383	62.914	63.837	0					49	17	5	0	0	0	0.69122	1	22920	22920		48.346	48.346	1	20435000	+		44503	19425	32548	32813	43422	43422					-0.01729810956339861
RQWHLRRWWRP	11	Unmodified	_RQWHLRRWWRP_					0	0	0			REV__ENST00000431361.1_1_20:61432246-61432384:-|nuORF	REV__ENST00000431361.1_1_20:61432246-61432384:-|nuORF	MSMS	A375_MHC_IP_R1	1	838.9546508789062	2	838.960909	1675.90726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.28	1	128.28	127.78	128.78	0								0	0	0	0.1636	1	49246	49246		0	0	1		+		44504	24703	32549	32814	43423	43423					0.09634752356191711
RQWKRKRRRK	10	Unmodified	_RQWKRKRRRK_					0	0	0			REV__ENST00000418635.6_1_6:35378793-35391776:+|nuORF	REV__ENST00000418635.6_1_6:35378793-35391776:+|nuORF	MSMS	A375_MHC_IP_R2	2	499.67431640625	3	499.98691	1496.9389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.791	1	79.536	79.036	80.036	0.74474								0	0	0	0.15642	1	29907	29907		0	0	1		+		44505	23899	32550	32815	43424	43424					0.21030745110124371
RQYGKNFFRI	10	Unmodified	_RQYGKNFFRI_					0	0	0		ENSG00000142599|ENST00000400908|RERE	ENSG00000142599|ENST00000400908|RERE	ENSG00000142599|ENST00000400908|RERE	MULTI-MSMS	A375_MHC_IP_R2	2	443.9789733886719	3	443.578923	1327.71494	-0.25376	-0.00011256	-0.13009	-5.7703E-05	-0.38385	-0.00017027	443.57892342407393	84.644	0.50541	85.38	85.069	85.574	0.73601					23	9	3	0	0	0	0.70496	1	32236	32236		5.7834	1.6668	1	1951000			44506	5314	32551	32816	43425	43425					0.06418992165504278
RQYKEKQRELV	11	Unmodified	_RQYKEKQRELV_					0	0	0		ENSG00000182095|ENST00000430969|TNRC18;nc|ENSG00000182095|O15417-2|TNRC18	ENSG00000182095|ENST00000430969|TNRC18;nc|ENSG00000182095|O15417-2|TNRC18	ENSG00000182095|ENST00000430969|TNRC18	MULTI-SECPEP	A375_MHC_IP_R1	1	492.4775085449219	3	492.947563	1475.82086	-0.44336	-0.00021855	-0.080441	-3.9653E-05	-0.5238	-0.00025821	492.947289644323	40.091	0.45934	40.091	39.845	40.304	0					15	8	3	0	0	0	1.001	1	13757	13757		0.094841	0	1	2951400			44507	8375;14801	32552	32817	43426	43426					0.10198283220302073
RRAGKRTL	8	Unmodified	_RRAGKRTL_					0	0	0			REV__ENST00000379089.5_1_9:34400393-34400651:-|nuORF	REV__ENST00000379089.5_1_9:34400393-34400651:-|nuORF	MSMS	A375_MHC_IP_R2	2	479.7048034667969	2	479.306867	956.599181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.34	1	46.105	45.605	46.605	0.76519								0	0	0	0.16876	1	16944	16944		11.64	2.2929	1		+		44508	24191	32553	32818	43427	43427					0.11914513105307378
RRAGPALA	8	Unmodified	_RRAGPALA_					0	0	0			REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF	REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	406.6478271484375	2	406.248486	810.48242	-0.4472	-0.00018167	-0.056221	-2.284E-05	-0.50342	-0.00020451	406.2483868985099	125.04	1.809	125.04	124.75	126.56	0					55	35	3	0	0	0	0.77839	1	47223	47223		0.79363	0	1	330110000	+		44509	23321	32554	32819	43428	43428					0.06959774885535808
RRAGPALA	8	Unmodified	_RRAGPALA_					0	0	0			REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF	REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	406.248486	810.48242	-0.4472	-0.00018167	-0.056221	-2.284E-05	-0.50342	-0.00020451	406.2483868985099	125.04	1.809	125.04	124.75	126.56	0	0.031427	-2.752E-05	NaN	0.79363	55	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	330110000	+		44510	23321	32554	32819							0.06959774885535808
RRAGRPLA	8	Unmodified	_RRAGRPLA_					0	0	0			REV__ENST00000239223.3_1_5:172197224-172198187:-|nuORF	REV__ENST00000239223.3_1_5:172197224-172198187:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	896.4713745117188	1	896.553693	895.546417	-0.25344	-0.00022722	-0.67663	-0.00060664	-0.93007	-0.00083386	896.5531385453301	148.06	0.75018	148.08	147.9	148.65	0.018707					36	20	2	0	0	0	0.77861	1	57541	57541		0	0	1	93212	+		44511	23092	32555	32820	43429	43429					0.09446555042495675
RRAKVRRRGRR	11	Unmodified	_RRAKVRRRGRR_					0	0	0			REV__ENST00000436336.6_1_7:99036620-99036743:+|nuORF	REV__ENST00000436336.6_1_7:99036620-99036743:+|nuORF	MSMS	A375_MHC_IP_R1	1	733.9773559570312	2	733.977425	1465.9403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.05	1	140.05	139.55	140.55	0								0	0	0	0.1636	1	53805	53805		0	0	1		+		44512	24762	32556	32821	43430	43430					0.22596379198876093
RRALLEKHK	9	Unmodified	_RRALLEKHK_					0	0	0			REV__nc|ENSG00000269404|Q01892-3|SPIB	REV__nc|ENSG00000269404|Q01892-3|SPIB	MULTI-MSMS	A375_MHC_IP_R2	2	384.6436767578125	3	384.243763	1149.70946	0.077841	2.991E-05	-0.53924	-0.0002072	-0.4614	-0.00017729	384.24360117292014	138.34	0.50691	138.43	138.27	138.77	0.083969					12	9	2	0	0	0	0.76628	1	54287	54287		1.0715	0.10919	1	977180	+		44513	22938	32557	32822	43431	43431					0.1405931337369566
RRALLLLLL	9	Unmodified	_RRALLLLLL_					0	0	0		ENSG00000137509|ENST00000313010|PRCP;nc|ENSG00000137509|P42785-2|PRCP	ENSG00000137509|ENST00000313010|PRCP	ENSG00000137509|ENST00000313010|PRCP	MULTI-MSMS	A375_MHC_IP_R2	2	361.32537841796875	3	360.925371	1079.75428	-0.066528	-2.4012E-05	0.85754	0.00030951	0.79101	0.0002855	360.92567200609227	117.3	0.55676	117.96	117.68	118.24	0.65962					16	10	2	0	0	0	0.32899	1	44394	44394		20.415	0	1	13679000			44514	4893	32558	32823	43432	43432					0.2175974418705664
RRAPEPRVI	9	Unmodified	_RRAPEPRVI_					0	0	0		ENST00000533200.5_1_11:43904193-43919192:+|nuORF;nc|ENSG00000166199|Q96Q83-2|ALKBH3;ENSG00000166199|ENST00000302708|ALKBH3	ENST00000533200.5_1_11:43904193-43919192:+|nuORF	ENST00000533200.5_1_11:43904193-43919192:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	365.6243896484375	3	365.22448	1092.65161	0.33084	0.00012083	-0.051243	-1.8715E-05	0.2796	0.00010212	365.2243552659094	20.434	0.40647	20.434	20.232	20.638	0					12	7	2	0	0	0	0.6324	1	5269	5269		12.873	3.8964	1	1371200			44515	7041	32559	32824	43433	43433					0.10899051448268438
RRAPPGGG	8	Unmodified	_RRAPPGGG_					0	0	0		ENSG00000053328|ENST00000338882|METTL24	ENSG00000053328|ENST00000338882|METTL24	ENSG00000053328|ENST00000338882|METTL24	MULTI-MSMS	A375_MHC_IP_R1	1	384.6171569824219	2	384.217186	766.419819	0.42078	0.00016167	0.31833	0.00012231	0.73911	0.00028398	384.2171969681064	93.209	2.3365	93.209	91.604	93.941	0					71	45	3	0	0	0	0.77842	1	34249	34249		0.69038	0	1	2471300			44516	1245	32560	32825	43434	43434					0.02726628817379151
RRAPPGGG	8	Unmodified	_RRAPPGGG_					0	0	0		ENSG00000053328|ENST00000338882|METTL24	ENSG00000053328|ENST00000338882|METTL24	ENSG00000053328|ENST00000338882|METTL24	MULTI-MSMS	A375_MHC_IP_R2	2	384.6175537109375	2	384.217186	766.419819	-0.030148	-1.1584E-05	0.66447	0.0002553	0.63433	0.00024372	384.21725791981476	92.854	2.5341	93.593	91.822	94.356	0.73901					87	49	3	0	0	0	0.7779	1	35458	35458		2.5775	0	1	1900800			44517	1245	32560	32825	43435	43435					0.02726628817379151
RRAPPGGG	8	Unmodified	_RRAPPGGG_					0	0	0		ENSG00000053328|ENST00000338882|METTL24	ENSG00000053328|ENST00000338882|METTL24	ENSG00000053328|ENST00000338882|METTL24	MULTI-MSMS	A375_MHC_IP_R2	2	384.6170959472656	2	384.217186	766.419819	0.092233	3.5437E-05	0.32694	0.00012562	0.41917	0.00016105	384.21721744781576	94.419	1.9781	95.164	94.262	96.24	0.74474					54	38	2	0	0	0	0.77839	1	35723	35723		0.79363	0	1	1814100			44518	1245	32560	32825	43436	43436					0.02726628817379151
RRAPVVVRL	9	Unmodified	_RRAPVVVRL_					0	0	0		ENSG00000204344|ENST00000685781|STK19;nc|ENSG00000204344|P49842-3|STK19;ENST00000466132.5_1_6:31939873-31948823:+|nuORF;ENST00000492583.5_1_6:31939873-31948823:+|nuORF;nc|ENSG00000204344|P49842-2|STK19;nc|ENSG00000204344|P49842-1|STK19;ENST00000473983.5_1_6:31948159-31948823:+|nuORF;ENST00000491861.5_1_6:31940339-31948823:+|nuORF	ENSG00000204344|ENST00000685781|STK19	ENSG00000204344|ENST00000685781|STK19	MULTI-MSMS	A375_MHC_IP_R1	1	356.3047790527344	3	355.90497	1064.69308	-0.37182	-0.00013233	3.5632	0.0012681	3.1914	0.0011358	355.9047957734494	29.683	1.5557	29.683	29.403	30.959	0					82	30	4	0	0	0	0.46357	1	9337	9337		21.59	2.2282	1	25477000			44519	9431	32561	32826	43437	43437					0.16332232207605557
RRARLKSLPEA	11	Unmodified	_RRARLKSLPEA_					0	0	0		ENST00000368491.7_2_6:118972582-118972996:-|nuORF	ENST00000368491.7_2_6:118972582-118972996:-|nuORF	ENST00000368491.7_2_6:118972582-118972996:-|nuORF	MSMS	A375_MHC_IP_R1	1	648.796142578125	2	648.896577	1295.7786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.39	1	142.39	141.89	142.89	0								0	0	0	0.16334	1	54634	54634		1.3295	0.13619	1				44520	11115	32562	32827	43438	43438					0.14254352602597464
RRARWRRWWWR	11	Unmodified	_RRARWRRWWWR_					0	0	0		ENST00000475204.5_1_1:70687068-70687435:+|nuORF;ENST00000370951.5_1_1:70671397-70687435:+|nuORF;ENST00000463877.1_1_1:70671397-70687435:+|nuORF;ENST00000395136.6_2_1:70687096-70687432:+|nuORF	ENST00000475204.5_1_1:70687068-70687435:+|nuORF	ENST00000475204.5_1_1:70687068-70687435:+|nuORF	MSMS	A375_MHC_IP_R2	2	885.8682861328125	2	885.993075	1769.9716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.29	1	127.56	127.06	128.06	0.26593								0	0	0	0.16354	1	49891	49891		0.30703	0.30703	1				44521	11161	32563	32828	43439	43439					0.11740952232980817
RRAVWRPWRLW	11	Unmodified	_RRAVWRPWRLW_					0	0	0			REV__ENST00000370406.7_1_X:149106490-149106673:-|nuORF	REV__ENST00000370406.7_1_X:149106490-149106673:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6489868164062	3	527.972378	1580.8953	-0.50997	-0.00026925	3.1625	0.0016697	2.6526	0.0014005	527.9740328813768	77.296	0.50816	78.039	77.757	78.265	0.74293					10	9	2	0	0	0	1.0015	1	29414	29414		0.094841	0.094841	1	694050	+		44522	24029	32564	32829	43440	43440					0.12809135612997125
RRAVWRPWRLW	11	Unmodified	_RRAVWRPWRLW_					0	0	0			REV__ENST00000370406.7_1_X:149106490-149106673:-|nuORF	REV__ENST00000370406.7_1_X:149106490-149106673:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	527.972378	1580.8953	-0.37818	-0.00019967	4.9253	0.0026004	4.5472	0.0024008	528.3093273222495	78.387	0.25307	78.387	78.201	78.454	0	0.17407	0.0022649	NaN	0.094841	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	749360	+		44523	24029	32564	32829							0.12809135612997125
RRCFWNWRRWY	11	Unmodified	_RRCFWNWRRWY_					0	0	0			REV__CACNA1C|p.R511W|1|0.48|ENSG00000151067|chr12:2566444-2566444|C/T|missense_variant	REV__CACNA1C|p.R511W|1|0.48|ENSG00000151067|chr12:2566444-2566444|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	865.0526123046875	2	864.925677	1727.8368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.23	1	127.5	127	128	0.26593								0	0	0	0.16354	1	49848	49848		0.30703	0.30703	1		+		44524	15549	32565	32830	43441	43441					0.001997109762214677
RRCKLWYF	8	Unmodified	_RRCKLWYF_					0	0	0			REV__ENST00000563824.5_1_18:53131352-53252596:-|nuORF	REV__ENST00000563824.5_1_18:53131352-53252596:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	586.6904907226562	2	586.313303	1170.61205	-0.33451	-0.00019613	2.928	0.0017167	2.5935	0.0015206	586.3156634721558	43.779	0.20121	44.549	44.43	44.631	0.7691					5	3	2	0	0	0	0.92215	1	16304	16304		22.453	14.297	1	505700	+		44525	26210	32566	32831	43442	43442					0.033572081731790604
RRCKLWYFTWK	11	Unmodified	_RRCKLWYFTWK_					0	0	0			REV__ENST00000563824.5_1_18:53131352-53252596:-|nuORF	REV__ENST00000563824.5_1_18:53131352-53252596:-|nuORF	MSMS	A375_MHC_IP_R1	1	794.0110473632812	2	793.924281	1585.83401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.87	1	101.87	101.37	102.37	0								0	0	0	0.16339	1	37435	37435		1.0715	0.67075	1		+		44526	26210	32567	32832	43443	43443					0.06452442798695301
RRCPPLLRGLV	11	Unmodified	_RRCPPLLRGLV_					0	0	0		ENST00000462924.5_1_10:99206088-99212597:+|nuORF;nc|ENSG00000171307|Q969W1-4|ZDHHC16;nc|ENSG00000171307|Q969W1-3|ZDHHC16;nc|ENSG00000171307|Q969W1-2|ZDHHC16;ENSG00000171307|ENST00000393760|ZDHHC16	ENST00000462924.5_1_10:99206088-99212597:+|nuORF	ENST00000462924.5_1_10:99206088-99212597:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	427.66455078125	3	427.26417	1278.77068	-0.32406	-0.00013846	0.59952	0.00025615	0.27546	0.00011769	427.2643726134026	66.444	0.71496	67.18	66.78	67.495	0.73631					35	13	4	0	0	0	0.73636	1	25139	25139		2.8433	0.4085	1	3870900			44527	7594	32568	32833	43444	43444					0.14244502081487553
RRCPPLLRGLV	11	Unmodified	_RRCPPLLRGLV_					0	0	0		ENST00000462924.5_1_10:99206088-99212597:+|nuORF;nc|ENSG00000171307|Q969W1-4|ZDHHC16;nc|ENSG00000171307|Q969W1-3|ZDHHC16;nc|ENSG00000171307|Q969W1-2|ZDHHC16;ENSG00000171307|ENST00000393760|ZDHHC16	ENST00000462924.5_1_10:99206088-99212597:+|nuORF	ENST00000462924.5_1_10:99206088-99212597:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	427.26417	1278.77068	-0.4739	-0.00020248	1.1185	0.00047788	0.64456	0.0002754	427.26458991581586	67.541	0.76131	67.541	67.143	67.904	0	0.18054	0.00031576	NaN	2.8433	40	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4128500			44528	7594	32568	32833							0.14244502081487553
RRCPPLLRGLV	11	Unmodified	_RRCPPLLRGLV_					0	0	0		ENST00000462924.5_1_10:99206088-99212597:+|nuORF;nc|ENSG00000171307|Q969W1-4|ZDHHC16;nc|ENSG00000171307|Q969W1-3|ZDHHC16;nc|ENSG00000171307|Q969W1-2|ZDHHC16;ENSG00000171307|ENST00000393760|ZDHHC16	ENST00000462924.5_1_10:99206088-99212597:+|nuORF	ENST00000462924.5_1_10:99206088-99212597:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	427.26417	1278.77068	-0.32406	-0.00013846	0.59952	0.00025615	0.27546	0.00011769	427.2643726134026	66.444	0.71496	67.18	66.78	67.495	0.73631	-0.18054	-0.00034942	NaN	2.8433	35	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3870900			44529	7594	32568	32833							0.14244502081487553
RRCWWRWPRCY	11	Unmodified	_RRCWWRWPRCY_					0	0	0		ENST00000341500.9_1_19:7267817-7293934:-|nuORF	ENST00000341500.9_1_19:7267817-7293934:-|nuORF	ENST00000341500.9_1_19:7267817-7293934:-|nuORF	MSMS	A375_MHC_IP_R1	1	834.7491455078125	2	834.400981	1666.78741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.75	1	109.75	109.25	110.25	0								0	0	0	0.1636	1	40250	40250		0	0	1				44530	10869	32569	32834	43445	43445					-0.019313203042202076
RRDVRAELFLW	11	Unmodified	_RRDVRAELFLW_					0	0	0		ENSG00000148483|ENST00000377495|TMEM236	ENSG00000148483|ENST00000377495|TMEM236	ENSG00000148483|ENST00000377495|TMEM236	MULTI-MSMS	A375_MHC_IP_R1	1	731.30810546875	2	730.909685	1459.80482	-0.19728	-0.00014419	-0.658	-0.00048094	-0.85528	-0.00062513	730.9089982556833	112.61	0.56207	112.61	112.33	112.89	0					18	10	2	0	0	0	0.73078	1	41303	41303		8.1555	0.54658	1	2702200			44531	5746	32570	32835	43446	43446					0.09330621774074643
RRDYWEEVTC	10	Unmodified	_RRDYWEEVTC_					0	0	0		ENST00000379716.5_1_X:19650045-19689070:-|nuORF	ENST00000379716.5_1_X:19650045-19689070:-|nuORF	ENST00000379716.5_1_X:19650045-19689070:-|nuORF	MSMS	A375_MHC_IP_R1	1	453.2698974609375	3	452.871555	1355.59283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.692	1	17.692	17.192	18.192	0								0	0	0	0.15629	1	4162	4162		0.13989	0.056541	1				44532	11341	32571	32836	43447	43447					-0.07073837699044816
RREESYRWYRE	11	Unmodified	_RREESYRWYRE_					0	0	0			REV__ENSG00000125966|ENST00000246186|MMP24	REV__ENSG00000125966|ENST00000246186|MMP24	MULTI-MSMS	A375_MHC_IP_R2	2	815.7972412109375	2	815.39767	1628.78079	-0.89966	-0.00073358	-0.19102	-0.00015575	-1.0907	-0.00088933	815.3974182477716	81.98	0.35684	82.723	82.482	82.839	0.74293					14	6	3	0	0	0	0.73934	1	31183	31183		0	0	1	3259600	+		44533	18375	32572	32837	43448	43448					-0.008452634502646106
RREEWKPYWMR	11	Unmodified	_RREEWKPYWMR_					0	0	0		ENST00000499685.2_1_12:92539993-92577930:+|nuORF	ENST00000499685.2_1_12:92539993-92577930:+|nuORF	ENST00000499685.2_1_12:92539993-92577930:+|nuORF	MSMS	A375_MHC_IP_R1	1	818.9395751953125	2	818.911901	1635.80925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.294	1	89.294	88.794	89.794	0								0	0	0	0.16339	1	32800	32800		1.0715	0.76443	1				44534	12773	32573	32838	43449	43449					0.01677762925328352
RREGAIAP	8	Unmodified	_RREGAIAP_					0	0	0			REV__SVA_D_dup1229|chr17:30522805-30524227:+|1.105592693116747|0.476847412502663|1.21|471.0|1|1|sense	REV__SVA_D_dup1229|chr17:30522805-30524227:+|1.105592693116747|0.476847412502663|1.21|471.0|1|1|sense	MULTI-MSMS	A375_MHC_IP_R1	1	435.28228759765625	2	435.251226	868.487899	-0.16108	-7.0109E-05	0.021941	9.55E-06	-0.13914	-6.0559E-05	435.2511357797836	99.557	2.8896	99.557	98.352	101.24	0					89	56	2	0	0	0	0.77717	1	37104	37104		5.2307	0	1	5199800	+		44535	28064	32574	32839	43450	43450					0.04839453677379879
RREGAIAP	8	Unmodified	_RREGAIAP_					0	0	0			REV__SVA_D_dup1229|chr17:30522805-30524227:+|1.105592693116747|0.476847412502663|1.21|471.0|1|1|sense	REV__SVA_D_dup1229|chr17:30522805-30524227:+|1.105592693116747|0.476847412502663|1.21|471.0|1|1|sense	MULTI-MSMS	A375_MHC_IP_R2	2	435.2822570800781	2	435.251226	868.487899	-0.12885	-5.6081E-05	0.054031	2.3517E-05	-0.074816	-3.2564E-05	435.2511548815594	99.112	5.1421	99.871	97.877	103.02	0.75977					173	100	3	0	0	0	0.77781	1	38022	38022		2.8892	0	1	4933900	+		44536	28064	32574	32839	43451	43451					0.04839453677379879
RREIREKY	8	Unmodified	_RREIREKY_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MULTI-MSMS	A375_MHC_IP_R1	1	384.2755432128906	3	383.887756	1148.64144	0.32112	0.00012327	-1.013	-0.00038887	-0.69186	-0.0002656	383.88755486336487	25.229	0.45783	25.229	25.053	25.511	0					10	8	2	0	0	0	0.7769	1	7339	7339		6.2058	1.6769	1	2068600			44537	7673	32575	32840	43452	43452					0.07306443723041411
RREKPRRRERI	11	Unmodified	_RREKPRRRERI_					0	0	0			REV__nc|ENSG00000077157|O60237-3|PPP1R12B	REV__nc|ENSG00000077157|O60237-3|PPP1R12B	MULTI-SECPEP	A375_MHC_IP_R2	2	388.390869140625	4	388.740828	1550.93421	-0.44819	-0.00017423	-2.0729	-0.00080583	-2.5211	-0.00098006	388.74025849934475	60.694	0.5604	61.439	61.006	61.566	0.74503					19	10	3	0	0	0	1.0015	1	23035	23035		0.40827	0	1	2914400	+		44538	27117	32576	32841	43453	43453					0.1807781617674209
RRELNIGKW	9	Unmodified	_RRELNIGKW_					0	0	0			REV__ENSG00000144468|ENST00000392062|RHBDD1	REV__ENSG00000144468|ENST00000392062|RHBDD1	MULTI-MSMS	A375_MHC_IP_R2	2	391.6121520996094	3	391.228001	1170.66217	0.01148	4.4913E-06	2.0434	0.00079944	2.0549	0.00080393	391.2283986628774	46.829	0.66137	47.59	47.361	48.022	0.76127					19	12	2	0	0	0	0.51106	1	17540	17540		18.373	7.8456	1	1761600	+		44539	19425	32577	32842	43454	43454					0.08367034102707294
RRELNIGKW	9	Unmodified	_RRELNIGKW_					0	0	0			REV__ENSG00000144468|ENST00000392062|RHBDD1	REV__ENSG00000144468|ENST00000392062|RHBDD1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	391.228001	1170.66217	0.28323	0.00011081	1.3013	0.00050909	1.5845	0.0006199	391.22813974083937	47.717	0.50373	47.717	47.517	48.02	0	0.063599	-0.00032504	NaN	18.373	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1277700	+		44540	19425	32577	32842							0.08367034102707294
RRELRRRTILL	11	Unmodified	_RRELRRRTILL_					0	0	0		ENSG00000121680|ENST00000378750|PEX16;nc|ENSG00000121680|Q9Y5Y5-2|PEX16	ENSG00000121680|ENST00000378750|PEX16	ENSG00000121680|ENST00000378750|PEX16	MULTI-MSMS	A375_MHC_IP_R2	2	494.72418212890625	3	494.654826	1480.94265	-0.29284	-0.00014485	0.51676	0.00025562	0.22392	0.00011076	494.9894675219361	149.16	1.9983	149.17	147.87	149.87	0.018707					96	62	2	0	0	0	0.73934	4	57611	57611;57754;57856;57964		0	0	1	364520			44541	3729	32578	32843	43455;43456;43457;43458	43455					0.22141370093368096
RRELRRRTILL	11	Unmodified	_RRELRRRTILL_					0	0	0		ENSG00000121680|ENST00000378750|PEX16;nc|ENSG00000121680|Q9Y5Y5-2|PEX16	ENSG00000121680|ENST00000378750|PEX16	ENSG00000121680|ENST00000378750|PEX16	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	494.654826	1480.94265	-0.71927	-0.00035579	0.87877	0.00043469	0.1595	7.89E-05	494.6551649333789	149.06	2.1445	149.06	147.78	149.93	0	-0.058688	0.00027517	NaN	0	111	63	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	540770			44542	3729	32578	32843							0.22141370093368096
RRELRYLHNWV	11	Unmodified	_RRELRYLHNWV_					0	0	0			REV__ENST00000480175.1_1_20:33167126-33176390:-|nuORF	REV__ENST00000480175.1_1_20:33167126-33176390:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	515.35400390625	3	514.619781	1540.83751	-0.87547	-0.00045053	-0.3878	-0.00019957	-1.2633	-0.00065011	514.6194433039661	66.58	0.45853	67.316	67.087	67.546	0.73631					24	8	4	0	0	0	1.0011	1	25216	25216		1.3296	1.2348	1	8190200	+		44543	25242	32579	32844	43459	43459					0.0887282889693779
RRELWFWWRGW	11	Unmodified	_RRELWFWWRGW_					0	0	0		ENST00000246635.7_1_17:39661629-39661743:-|nuORF	ENST00000246635.7_1_17:39661629-39661743:-|nuORF	ENST00000246635.7_1_17:39661629-39661743:-|nuORF	MSMS	A375_MHC_IP_R2	2	559.8922729492188	3	559.956505	1676.84768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.688	1	85.424	84.924	85.924	0.73601								0	0	0	0.1636	1	32194	32194		0	0	1				44544	10189	32580	32845	43460	43460					0.03633436622158115
RRERERQRSRE	11	Unmodified	_RRERERQRSRE_					0	0	0			REV__ENSG00000140829|ENST00000268482|DHX38	REV__ENSG00000140829|ENST00000268482|DHX38	MSMS	A375_MHC_IP_R1	1	779.826904296875	2	779.425084	1556.83562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.79	1	100.79	100.29	101.29	0								0	0	0	0.16337	1	37045	37045		1.1933	0.88631	1		+		44545	19230	32581	32846	43461	43461					0.0794716814102685
RRERERQRSRE	11	Unmodified	_RRERERQRSRE_					0	0	0			REV__ENSG00000140829|ENST00000268482|DHX38	REV__ENSG00000140829|ENST00000268482|DHX38	MSMS	A375_MHC_IP_R1	1	779.826416015625	2	779.425084	1556.83562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.3	1	101.3	100.8	101.8	0								0	0	0	0.16337	1	37230	37230		1.1933	0.84271	1		+		44546	19230	32581	32846	43462	43462					0.0794716814102685
RRERRFLLRQR	11	Unmodified	_RRERRFLLRQR_					0	0	0		ENST00000260324.11_1_15:45927092-45951106:+|nuORF	ENST00000260324.11_1_15:45927092-45951106:+|nuORF	ENST00000260324.11_1_15:45927092-45951106:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	793.88427734375	2	793.484748	1584.95494	-0.76659	-0.00060828	0.080421	6.3813E-05	-0.68617	-0.00054447	793.4847713404225	143.16	0.6588	143.19	142.79	143.45	0.030731					25	12	3	0	0	0	0.73902	1	55934	55934		0.30703	0.30703	1	2521700			44547	10267	32582	32847	43463	43463					0.1858640655639192
RRERRRHKQML	11	Unmodified	_RRERRRHKQML_					0	0	0			REV__ENST00000533079.5_1_11:64955425-64973207:+|nuORF	REV__ENST00000533079.5_1_11:64955425-64973207:+|nuORF	MSMS	A375_MHC_IP_R1	1	522.6952514648438	3	522.639181	1564.89571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.49	1	126.49	125.99	126.99	0								0	0	0	0.16336	1	48308	48308		1.2148	0.70888	1		+		44548	16241	32583	32848	43464	43464					0.13586187270539085
RRETERIERER	11	Unmodified	_RRETERIERER_					0	0	0			REV__SAFB2|p.Y825Lfs*9|1|0.3|ENSG00000130254|chr19:5590331-5590332|-/C|frameshift_variant	REV__SAFB2|p.Y825Lfs*9|1|0.3|ENSG00000130254|chr19:5590331-5590332|-/C|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	511.03350830078125	3	510.613355	1528.81823	-0.71554	-0.00036537	1.1147	0.00056918	0.39916	0.00020382	510.6136637348362	134.02	0.65822	134.02	133.71	134.37	0					33	12	4	0	0	0	1.001	1	51773	51773		0.40827	0.32491	1	6994400	+		44549	18528	32584	32849	43465	43465					0.07497827815359415
RRETERIERER	11	Unmodified	_RRETERIERER_					0	0	0			REV__SAFB2|p.Y825Lfs*9|1|0.3|ENSG00000130254|chr19:5590331-5590332|-/C|frameshift_variant	REV__SAFB2|p.Y825Lfs*9|1|0.3|ENSG00000130254|chr19:5590331-5590332|-/C|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	510.613355	1528.81823	-0.65866	-0.00033632	1.0375	0.00052974	0.3788	0.00019342	510.6137186988185	133.94	0.61397	134.1	133.8	134.42	0.16487	0.04327	-4.047E-05	NaN	0.40827	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6689500	+		44550	18528	32584	32849							0.07497827815359415
RRETRRAPQA	10	Unmodified	_RRETRRAPQA_					0	0	0		ENST00000530686.5_1_11:27528423-27661519:+|nuORF;ENST00000502161.6_1_11:27528415-27661519:+|nuORF;ENST00000501176.6_1_11:27528415-27661519:+|nuORF	ENST00000530686.5_1_11:27528423-27661519:+|nuORF	ENST00000530686.5_1_11:27528423-27661519:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	414.3033752441406	3	414.23756	1239.69085	-0.29737	-0.00012318	-0.060948	-2.5247E-05	-0.35831	-0.00014843	414.23762916583416	23.424	0.30227	24.054	23.777	24.079	0.63014					6	5	2	0	0	0	0.67124	1	7533	7533		15.538	5.7742	1	10000000			44551	12783	32585	32850	43466	43466					0.08059151731822567
RREVARKVVL	10	Unmodified	_RREVARKVVL_					0	0	0			REV__nc|ENSG00000162894|O60667-2|FCMR	REV__nc|ENSG00000162894|O60667-2|FCMR	MULTI-MSMS	A375_MHC_IP_R1	1	409.6156311035156	3	409.266568	1224.77787	-0.24969	-0.00010219	2.7868	0.0011406	2.5371	0.0010384	409.2674928998653	24.372	0.15225	24.372	24.245	24.397	0					4	2	2	0	0	0	0.71944	1	6864	6864		1.7423	0	1	1057800	+		44552	20319	32586	32851	43467	43467					0.17447557953573778
RREVERRLRG	10	Unmodified	_RREVERRLRG_					0	0	0		ENST00000585105.5_1_17:73482215-73489290:+|nuORF;ENST00000581085.5_1_17:73467944-73489290:+|nuORF;ENSG00000177728|ENST00000314256|TMEM94;nc|ENSG00000177728|Q12767-3|TMEM94;nc|ENSG00000177728|Q12767-2|TMEM94	ENST00000585105.5_1_17:73482215-73489290:+|nuORF	ENST00000585105.5_1_17:73482215-73489290:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	442.17608642578125	3	442.932359	1325.77525	-0.43474	-0.00019256	-1.4559	-0.00064485	-1.8906	-0.00083741	443.26559174608127	142.07	0.25557	142.07	141.93	142.18	0					6	4	2	0	0	0	0.94941	1	54503	54503		0.56317	0	1	464880			44553	8106	32587	32852	43468	43468					0.12539102548589653
RREWLKWSREE	11	Unmodified	_RREWLKWSREE_					0	0	0		ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	525.6837768554688	3	525.611063	1573.81136	-0.46663	-0.00024526	1.2187	0.00064054	0.75204	0.00039528	525.9459560609429	67.444	0.35793	68.18	68.001	68.359	0.73631					11	6	2	0	0	0	0.73715	1	25536	25536		2.084	1.239	1	4380400			44554	2807	32588	32853	43469	43469					0.047405149347923725
RREWSRLK	8	Unmodified	_RREWSRLK_					0	0	0		nc|ENSG00000132535|P78352-2|DLG4;nc|ENSG00000132535|P78352-3|DLG4;ENSG00000132535|ENST00000399506|DLG4	nc|ENSG00000132535|P78352-2|DLG4	nc|ENSG00000132535|P78352-2|DLG4	MSMS	A375_MHC_IP_R2	2	377.5478820800781	3	377.55623	1129.64686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.854	1	28.532	28.032	29.032	0.67857								0	0	0	0.16876	1	9566	9566		11.495	4.8643	1				44555	14605	32589	32854	43470	43470					0.08722167305495532
RREWVPLL	8	Unmodified	_RREWVPLL_					0	0	0			REV__nc|ENSG00000151414|Q8TDX7-2|NEK7	REV__nc|ENSG00000151414|Q8TDX7-2|NEK7	MSMS	A375_MHC_IP_R2	2	356.9254455566406	3	356.881943	1067.624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.114	1	27.793	27.293	28.293	0.67857								0	0	0	0.16876	1	9228	9228		5.7319	0.43497	1		+		44556	27287	32590	32855	43471	43471					0.09289148188031504
RRFDDQNL	8	Unmodified	_RRFDDQNL_					0	0	0		ENSG00000157827|ENST00000288670|FMNL2;ENST00000475377.2_1_2:153500042-153504416:+|nuORF	ENSG00000157827|ENST00000288670|FMNL2	ENSG00000157827|ENST00000288670|FMNL2	MSMS	A375_MHC_IP_R2	2	532.1768798828125	2	532.267604	1062.52066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.79	1	127.05	126.55	127.55	0.26593								0	0	0	0.16876	1	49630	49630		16.942	0	1				44557	6268	32591	32856	43472	43472					-0.008103839904379129
RRFEAGFKSK	10	Unmodified	_RRFEAGFKSK_					0	0	0			REV__nc|ENSG00000178184|Q9BYG4-2|PARD6G	REV__nc|ENSG00000178184|Q9BYG4-2|PARD6G	MSMS	A375_MHC_IP_R2	2	409.27874755859375	3	409.231523	1224.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.313	1	24.957	24.457	25.457	0.64368								0	0	0	0.15306	1	7968	7968		10.899	3.7972	1		+		44558	18277	32592	32857	43473	43473					0.06939016757110039
RRFKGQVLI	9	Unmodified	_RRFKGQVLI_					0	0	0		ENST00000510078.5_1_3:129115194-129117890:-|nuORF;ENST00000506593.1_1_3:129115194-129118308:-|nuORF	ENST00000510078.5_1_3:129115194-129117890:-|nuORF	ENST00000510078.5_1_3:129115194-129117890:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	373.3049621582031	3	372.904859	1115.69275	0.39925	0.00014888	-0.40199	-0.0001499	-0.0027433	-1.023E-06	372.90469643395966	30.874	0.65783	31.593	31.317	31.974	0.71857					29	12	3	0	0	0	0.54812	1	10866	10866		31.268	3.6395	1	9167200			44559	12858	32593	32858	43474	43474					0.13952812487764277
RRFKWAIEL	9	Unmodified	_RRFKWAIEL_					0	0	0		nc|ENSG00000128463|Q5J8M3-2|EMC4;ENSG00000128463|ENST00000267750|EMC4;nc|ENSG00000128463|Q5J8M3-3|EMC4;ENST00000557941.1_1_15:34517315-34518058:+|nuORF	nc|ENSG00000128463|Q5J8M3-2|EMC4	nc|ENSG00000128463|Q5J8M3-2|EMC4	MULTI-MSMS	A375_MHC_IP_R2	2	407.3081359863281	3	406.90838	1217.70331	0.096457	3.9249E-05	0.022974	9.3484E-06	0.11943	4.8598E-05	406.9083773468943	67.899	1.3697	68.634	68.358	69.728	0.73511					76	26	5	0	0	0	0.073067	1	25694	25694		55.503	55.503	1	73925000			44560	14590	32594	32859	43475	43475					0.10316795142171031
RRFLGKKYRKY	11	Unmodified	_RRFLGKKYRKY_					0	0	0		ENSG00000198026|ENST00000322927|ZNF335;nc|ENSG00000198026|Q9H4Z2-2|ZNF335;ENST00000475002.1_1_20:44592360-44592642:-|nuORF	ENSG00000198026|ENST00000322927|ZNF335	ENSG00000198026|ENST00000322927|ZNF335	MULTI-MSMS	A375_MHC_IP_R1	1	758.8576049804688	2	757.956969	1513.89939	-0.85536	-0.00064833	0.21259	0.00016113	-0.64277	-0.00048719	758.4582835603277	142.4	1.0114	142.4	141.98	142.99	0					36	19	4	0	0	0	0.73902	1	54712	54712		0.30703	0.30703	1	2433100			44561	9224	32595	32860	43476	43476					0.16299180316059392
RRFNYVVKL	9	Unmodified	_RRFNYVVKL_					0	0	0		nc|ENSG00000147364|Q8TCJ0|FBXO25;ENSG00000147364|ENST00000350302|FBXO25;nc|ENSG00000147364|Q8TCJ0-3|FBXO25	nc|ENSG00000147364|Q8TCJ0|FBXO25	nc|ENSG00000147364|Q8TCJ0|FBXO25	MULTI-SECPEP	A375_MHC_IP_R1	1	399.3082275390625	3	398.90838	1193.70331	-0.093103	-3.714E-05	0.14217	5.6712E-05	0.049066	1.9573E-05	398.90839205519205	44.168	0.71583	44.168	43.859	44.575	0					34	13	4	0	0	0	0.07754	1	15367	15367		57.722	36.132	1	16320000			44562	5678	32596	32861	43477	43477					0.11420795142180395
RRFNYVVKL	9	Unmodified	_RRFNYVVKL_					0	0	0		nc|ENSG00000147364|Q8TCJ0|FBXO25;ENSG00000147364|ENST00000350302|FBXO25;nc|ENSG00000147364|Q8TCJ0-3|FBXO25	nc|ENSG00000147364|Q8TCJ0|FBXO25	nc|ENSG00000147364|Q8TCJ0|FBXO25	MULTI-SECPEP	A375_MHC_IP_R2	2	399.30841064453125	3	398.90838	1193.70331	0.033387	1.3318E-05	-0.17415	-6.947E-05	-0.14076	-5.6152E-05	398.9082966226449	43.075	0.65847	43.847	43.573	44.231	0.7724					37	12	4	0	0	0	0.040439	1	16012	16012		63.961	47.395	1	17704000			44563	5678	32596	32861	43478	43478					0.11420795142180395
RRFNYVVRL	9	Unmodified	_RRFNYVVRL_					0	0	0		ENSG00000156804|ENST00000517956|FBXO32;ENST00000521719.5_1_8:124526414-124553254:-|nuORF;ENST00000287396.2_1_8:124515615-124544254:-|nuORF	ENSG00000156804|ENST00000517956|FBXO32	ENSG00000156804|ENST00000517956|FBXO32	MULTI-MSMS	A375_MHC_IP_R1	1	408.6437683105469	3	408.243763	1221.70946	0.077723	3.173E-05	0.2205	9.0019E-05	0.29823	0.00012175	408.2438636742092	45.585	0.96128	45.585	45.334	46.295	0					69	18	5	0	0	0	0.0098859	2	15914	15914;16143		117.76	71.738	1	100340000			44564	6210	32597	32862	43479;43480	43479					0.10747313373690304
RRFNYVVRL	9	Unmodified	_RRFNYVVRL_					0	0	0		ENSG00000156804|ENST00000517956|FBXO32;ENST00000521719.5_1_8:124526414-124553254:-|nuORF;ENST00000287396.2_1_8:124515615-124544254:-|nuORF	ENSG00000156804|ENST00000517956|FBXO32	ENSG00000156804|ENST00000517956|FBXO32	MULTI-MSMS	A375_MHC_IP_R2	2	408.6435852050781	3	408.243763	1221.70946	-0.038891	-1.5877E-05	-0.25678	-0.00010483	-0.29567	-0.0001207	408.24364469971283	44.501	1.0168	45.27	44.985	46.001	0.7691					58	19	5	0	0	0	0.0090499	1	16571	16571		100.09	54.068	1	103180000			44565	6210	32597	32862	43481	43481					0.10747313373690304
RRFPDLNRL	9	Unmodified	_RRFPDLNRL_					0	0	0		ENSG00000095002|ENST00000233146|MSH2;nc|ENSG00000095002|P43246-2|MSH2	ENSG00000095002|ENST00000233146|MSH2	ENSG00000095002|ENST00000233146|MSH2	MULTI-MSMS	A375_MHC_IP_R1	1	396.63165283203125	3	396.231634	1185.67307	0.11311	4.4819E-05	-0.083714	-3.317E-05	0.0294	1.1649E-05	396.2315705912912	42.755	0.9635	42.755	42.233	43.197	0					45	18	3	0	0	0	0.135	1	14751	14751		44.392	25.671	1	12134000			44566	2032	32598	32863	43482	43482					0.08766436477003481
RRFPDLNRL	9	Unmodified	_RRFPDLNRL_					0	0	0		ENSG00000095002|ENST00000233146|MSH2;nc|ENSG00000095002|P43246-2|MSH2	ENSG00000095002|ENST00000233146|MSH2	ENSG00000095002|ENST00000233146|MSH2	MULTI-MSMS	A375_MHC_IP_R2	2	396.6314697265625	3	396.231634	1185.67307	-0.17884	-7.0863E-05	-0.12378	-4.9047E-05	-0.30263	-0.00011991	396.23156797538826	41.703	0.86506	42.478	42.047	42.913	0.77451					43	16	3	0	0	0	0.28625	1	15414	15414		31.636	5.6151	1	9221800			44567	2032	32598	32863	43483	43483					0.08766436477003481
RRFPEQVRV	9	Unmodified	_RRFPEQVRV_					0	0	0		nc|ENSG00000087157|Q32NB8-2|PGS1;ENSG00000087157|ENST00000262764|PGS1;nc|ENSG00000087157|Q32NB8-3|PGS1	nc|ENSG00000087157|Q32NB8-2|PGS1	nc|ENSG00000087157|Q32NB8-2|PGS1	MULTI-MSMS	A375_MHC_IP_R1	1	396.6313781738281	3	396.231634	1185.67307	-0.30566	-0.00012111	-0.17751	-7.0333E-05	-0.48317	-0.00019145	396.2314552695761	26.887	1.1101	26.887	26.474	27.584	0					59	21	4	0	0	0	0.038567	2	8004	8004;8053		68.76	30.989	1	17754000			44568	1860	32599	32864	43484;43485	43484					0.08766436476980743
RRFPEQVRV	9	Unmodified	_RRFPEQVRV_					0	0	0		nc|ENSG00000087157|Q32NB8-2|PGS1;ENSG00000087157|ENST00000262764|PGS1;nc|ENSG00000087157|Q32NB8-3|PGS1	nc|ENSG00000087157|Q32NB8-2|PGS1	nc|ENSG00000087157|Q32NB8-2|PGS1	MULTI-MSMS	A375_MHC_IP_R2	2	396.6311950683594	3	396.231634	1185.67307	-0.53048	-0.00021019	-0.29585	-0.00011722	-0.82633	-0.00032742	396.23144804167055	26.275	1.3248	26.935	26.347	27.671	0.65992					55	24	3	0	0	0	0.10518	1	8724	8724		49.742	28.871	1	16886000			44569	1860	32599	32864	43486	43486					0.08766436476980743
RRFPLEQRL	9	Unmodified	_RRFPLEQRL_					0	0	0		nc|ENSG00000162129|Q9H078-5|CLPB;nc|ENSG00000162129|Q9H078-3|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB	nc|ENSG00000162129|Q9H078-5|CLPB	nc|ENSG00000162129|Q9H078-5|CLPB	MULTI-MSMS	A375_MHC_IP_R2	2	405.9754943847656	3	405.575401	1213.70437	-0.22285	-9.0382E-05	-0.017255	-6.9984E-06	-0.2401	-9.738E-05	405.5753936202292	35.396	0.86032	36.16	35.778	36.638	0.76338					52	16	5	0	0	0	0.18338	1	12777	12777		39.213	17.414	1	49343000			44570	6509	32600	32865	43487	43487					0.10607009511090837
RRFQKTQYL	9	Unmodified	_RRFQKTQYL_					0	0	0		nc|ENSG00000105880|P56178-2|DLX5;nc|ENSG00000115844|Q07687-2|DLX2;ENSG00000105880|ENST00000648378|DLX5;ENSG00000115844|ENST00000234198|DLX2	nc|ENSG00000105880|P56178-2|DLX5	nc|ENSG00000105880|P56178-2|DLX5	MULTI-MSMS	A375_MHC_IP_R1	1	414.303466796875	3	413.903406	1238.68839	0.036822	1.5241E-05	-0.2021	-8.3648E-05	-0.16527	-6.8407E-05	413.9033652575675	23.762	0.71174	23.762	23.584	24.296	0					30	13	3	0	0	0	0.16945	1	6594	6594		40.239	11.745	1	159160000			44571	2648	32601	32866	43488	43488					0.07859303274199192
RRFQKTQYL	9	Unmodified	_RRFQKTQYL_					0	0	0		nc|ENSG00000105880|P56178-2|DLX5;nc|ENSG00000115844|Q07687-2|DLX2;ENSG00000105880|ENST00000648378|DLX5;ENSG00000115844|ENST00000234198|DLX2	nc|ENSG00000105880|P56178-2|DLX5	nc|ENSG00000105880|P56178-2|DLX5	MULTI-MSMS	A375_MHC_IP_R2	2	414.30328369140625	3	413.903406	1238.68839	-0.3394	-0.00014048	0.02982	1.2343E-05	-0.30959	-0.00012814	413.9034273106448	22.863	0.66356	23.493	23.113	23.777	0.63014					44	12	5	0	0	0	0.16945	1	7239	7239		40.239	22.797	1	100450000			44572	2648	32601	32866	43489	43489					0.07859303274199192
RRFQQTQYL	9	Unmodified	_RRFQQTQYL_					0	0	0		ENSG00000144355|ENST00000361725|DLX1;ENST00000409492.1_1_2:172950333-172951818:+|nuORF	ENSG00000144355|ENST00000361725|DLX1	ENSG00000144355|ENST00000361725|DLX1	MULTI-MSMS	A375_MHC_IP_R1	1	620.7329711914062	2	620.333279	1238.652	-0.45835	-0.00028433	-0.049607	-3.0773E-05	-0.50796	-0.0003151	620.3332163644434	31.991	0.41133	31.991	31.819	32.231	0					16	7	3	0	0	0	0.13797	1	10300	10300		43.858	14.777	1	6325700			44573	5478	32602	32867	43490	43490					0.04222426377486954
RRFQQTQYL	9	Unmodified	_RRFQQTQYL_					0	0	0		ENSG00000144355|ENST00000361725|DLX1;ENST00000409492.1_1_2:172950333-172951818:+|nuORF	ENSG00000144355|ENST00000361725|DLX1	ENSG00000144355|ENST00000361725|DLX1	MULTI-SECPEP	A375_MHC_IP_R1	1	414.291259765625	3	413.891278	1238.652	0.26746	0.0001107	-0.2671	-0.00011055	0.00036059	1.4925E-07	413.89110466127806	31.992	0.46121	31.992	31.718	32.179	0					25	8	4	0	0	0	0.57304	1	10277	10277		29.841	2.6173	1	20011000			44574	5478	32602	32867	43491	43491					0.04222426377486954
RRFQQTQYL	9	Unmodified	_RRFQQTQYL_					0	0	0		ENSG00000144355|ENST00000361725|DLX1;ENST00000409492.1_1_2:172950333-172951818:+|nuORF	ENSG00000144355|ENST00000361725|DLX1	ENSG00000144355|ENST00000361725|DLX1	MULTI-MSMS	A375_MHC_IP_R2	2	620.7330932617188	2	620.333279	1238.652	-0.74638	-0.000463	0.048667	3.019E-05	-0.69771	-0.00043281	620.3333679934719	31.135	0.30552	31.853	31.669	31.974	0.71857					14	5	3	0	0	0	0.29981	1	10996	10996		30.637	1.555	1	5771900			44575	5478	32602	32867	43492	43492					0.04222426377486954
RRFQQTQYL	9	Unmodified	_RRFQQTQYL_					0	0	0		ENSG00000144355|ENST00000361725|DLX1;ENST00000409492.1_1_2:172950333-172951818:+|nuORF	ENSG00000144355|ENST00000361725|DLX1	ENSG00000144355|ENST00000361725|DLX1	MULTI-SECPEP	A375_MHC_IP_R2	2	414.2911376953125	3	413.891278	1238.652	-0.025545	-1.0573E-05	-0.25035	-0.00010362	-0.2759	-0.00011419	413.89117543794043	31.128	0.40723	31.846	31.618	32.026	0.71857					24	7	4	0	0	0	0.27114	1	10976	10976		53.404	53.404	1	20849000			44576	5478	32602	32867	43493	43493					0.04222426377486954
RRFQWPLLL	9	Unmodified	_RRFQWPLLL_					0	0	0		ENSG00000105767|ENST00000222374|CADM4	ENSG00000105767|ENST00000222374|CADM4	ENSG00000105767|ENST00000222374|CADM4	MULTI-MSMS	A375_MHC_IP_R1	1	410.6485595703125	3	410.248625	1227.72405	0.24344	9.987E-05	0.046074	1.8902E-05	0.28951	0.00011877	410.2486298330704	107.12	1.1748	107.12	106.62	107.8	0					68	22	4	0	0	0	0.29123	2	39257	39257;39457		31.268	9.6782	1	11229000			44577	2636	32603	32868	43494;43495	43494					0.11929385521852964
RRFQWPLLL	9	Unmodified	_RRFQWPLLL_					0	0	0		ENSG00000105767|ENST00000222374|CADM4	ENSG00000105767|ENST00000222374|CADM4	ENSG00000105767|ENST00000222374|CADM4	MULTI-SECPEP	A375_MHC_IP_R1	1	615.2677612304688	2	614.8693	1227.72405	-0.11197	-6.8845E-05	-0.22473	-0.00013818	-0.3367	-0.00020703	614.8690365973418	107.1	0.97215	107.1	106.68	107.65	0					50	18	4	0	0	0	0.14105	1	39277	39277		50.855	10.898	1	6895900			44578	2636	32603	32868	43496	43496					0.11929385521852964
RRFQWPLLL	9	Unmodified	_RRFQWPLLL_					0	0	0		ENSG00000105767|ENST00000222374|CADM4	ENSG00000105767|ENST00000222374|CADM4	ENSG00000105767|ENST00000222374|CADM4	MULTI-MSMS	A375_MHC_IP_R2	2	410.64892578125	3	410.248625	1227.72405	-0.0033352	-1.3683E-06	-0.39465	-0.00016191	-0.39799	-0.00016327	410.24843769867323	106.13	1.1215	106.89	106.32	107.44	0.75977					61	21	4	0	0	0	0.29123	2	40014	40014;40221		31.268	9.6782	1	11804000			44579	2636	32603	32868	43497;43498	43497					0.11929385521852964
RRFQWPLLL	9	Unmodified	_RRFQWPLLL_					0	0	0		ENSG00000105767|ENST00000222374|CADM4	ENSG00000105767|ENST00000222374|CADM4	ENSG00000105767|ENST00000222374|CADM4	MULTI-SECPEP	A375_MHC_IP_R2	2	615.2687377929688	2	614.8693	1227.72405	-0.61736	-0.00037959	-0.028959	-1.7806E-05	-0.64632	-0.0003974	614.8693792179845	106.16	0.96958	106.92	106.37	107.34	0.75977					40	18	3	0	0	0	0.24479	1	40077	40077		50.855	10.898	1	4331200			44580	2636	32603	32868	43499	43499					0.11929385521852964
RRFRQQRY	8	Unmodified	_RRFRQQRY_					0	0	0		ENSG00000136327|ENST00000258829|NKX2-8;ENSG00000125820|ENST00000377142|NKX2-2	ENSG00000136327|ENST00000258829|NKX2-8	ENSG00000136327|ENST00000258829|NKX2-8	MULTI-SECPEP	A375_MHC_IP_R2	2	404.6297912597656	3	403.895245	1208.66391	-0.24881	-0.00010049	1.1262	0.00045487	0.87741	0.00035438	404.2300279173489	18.855	0.20984	19.458	19.423	19.633	0.60308					6	5	2	0	0	0	0.972	1	5670	5670		3.5965	0	1	32562000			44581	3994	32604	32869	43500	43500					0.06792087911321687
RRFRRERRQR	10	Unmodified	_RRFRRERRQR_					0	0	0			REV__nc|ENSG00000204498|Q9UBC1-2|NFKBIL1	REV__nc|ENSG00000204498|Q9UBC1-2|NFKBIL1	MSMS	A375_MHC_IP_R1	1	758.8523559570312	2	758.45124	1514.88793	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.47	1	144.47	143.97	144.97	0								0	0	0	0.15629	1	55403	55403		0.40072	0.093686	1		+		44582	22519	32605	32870	43501	43501					0.15107796065285584
RRFRYWGIVKK	11	Unmodified	_RRFRYWGIVKK_					0	0	0			REV__ENSG00000165660|ENST00000298492|ABRAXAS2	REV__ENSG00000165660|ENST00000298492|ABRAXAS2	MSMS	A375_MHC_IP_R1	1	755.2940063476562	2	754.951687	1507.88882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.78	1	124.78	124.28	125.28	0								0	0	0	0.16339	1	47132	47132		1.0715	0	1		+		44583	20607	32606	32871	43502	43502					0.1551919766161518
RRFSVDVGR	9	Unmodified	_RRFSVDVGR_					0	0	0		ENSG00000186675|ENST00000373359|MAGEE2	ENSG00000186675|ENST00000373359|MAGEE2	ENSG00000186675|ENST00000373359|MAGEE2	MULTI-MSMS	A375_MHC_IP_R2	2	364.5922546386719	3	364.540468	1090.59957	-0.30873	-0.00011254	0.68448	0.00024952	0.37576	0.00013698	364.54006355050797	23.474	0.252	24.104	23.928	24.18	0.63014					7	4	2	0	0	0	0.53367	1	7596	7596		17.443	6.5437	1	1116300			44584	8770	32607	32872	43503	43503					0.05789888034519208
RRFVQQRRQ	9	Unmodified	_RRFVQQRRQ_					0	0	0			REV__ENSG00000081923|ENST00000648908|ATP8B1	REV__ENSG00000081923|ENST00000648908|ATP8B1	MULTI-MSMS	A375_MHC_IP_R2	2	425.6492919921875	3	425.2498	1272.72757	-0.013511	-5.7457E-06	-0.35077	-0.00014916	-0.36428	-0.00015491	425.2496936062064	136.06	0.40909	136.17	135.94	136.35	0.11134					13	7	3	0	0	0	0.74768	1	53480	53480		2.7352	0.65123	1	2325700	+		44585	16782	32608	32873	43504	43504					0.10211448348400154
RRFYRQFKFWL	11	Unmodified	_RRFYRQFKFWL_					0	0	0			REV__ENSG00000075035|ENST00000547525|WSCD2	REV__ENSG00000075035|ENST00000547525|WSCD2	MSMS	A375_MHC_IP_R2	2	823.8921508789062	2	823.956969	1645.89939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.31	1	116	115.5	116.5	0.68999								0	0	0	0.16354	1	43466	43466		0.30703	0.30703	1		+		44586	16646	32609	32874	43505	43505					0.10227180316041995
RRGDRILSV	9	Unmodified	_RRGDRILSV_					0	0	0		nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3	nc|ENSG00000082458|Q92796-2|DLG3	nc|ENSG00000082458|Q92796-2|DLG3	MULTI-MSMS	A375_MHC_IP_R1	1	357.929443359375	3	357.884235	1070.63087	-0.12779	-4.5735E-05	-0.67564	-0.0002418	-0.80343	-0.00028754	357.88406554468537	27.002	0.80579	27.002	26.677	27.482	0					21	15	2	0	0	0	0.48411	1	8136	8136		20.581	3.1383	1	7992400			44587	1759	32610	32875	43506	43506					0.09838461068602555
RRGGAALAP	9	Unmodified	_RRGGAALAP_					0	0	0		ENST00000461395.5_1_2:220378960-220396865:+|nuORF	ENST00000461395.5_1_2:220378960-220396865:+|nuORF	ENST00000461395.5_1_2:220378960-220396865:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	435.1592102050781	2	434.759218	867.503883	-0.79531	-0.00034577	0.57091	0.00024821	-0.2244	-9.7561E-05	434.7593767140311	123.26	0.85718	123.26	122.98	123.84	0					32	16	3	0	0	0	0.72507	1	46319	46319		4.756	0	1	134550000			44588	12184	32611	32876	43507	43507					0.06483159914273529
RRGGPPAA	8	Unmodified	_RRGGPPAA_					0	0	0			REV__ENST00000368678.8_1_6:112041256-112194621:-|nuORF	REV__ENST00000368678.8_1_6:112041256-112194621:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	391.62420654296875	2	391.225011	780.435469	-0.16668	-6.5208E-05	-0.047816	-1.8707E-05	-0.21449	-8.3915E-05	391.22491162821717	123.53	0.65632	123.91	123.63	124.29	0.3766					21	12	2	0	0	0	0.77839	1	47550	47550		0.79363	0	1	26955000	+		44589	24001	32612	32877	43508	43508					0.0364691533441146
RRGGPPAA	8	Unmodified	_RRGGPPAA_					0	0	0			REV__ENST00000368678.8_1_6:112041256-112194621:-|nuORF	REV__ENST00000368678.8_1_6:112041256-112194621:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	391.225011	780.435469	-0.32986	-0.00012905	-0.35149	-0.00013751	-0.68135	-0.00026656	391.22482504309056	124.02	0.55364	124.02	123.84	124.39	0	0.054564	-3.4964E-05	NaN	0.79363	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58122000	+		44590	24001	32612	32877							0.0364691533441146
RRGGPPAA	8	Unmodified	_RRGGPPAA_					0	0	0			REV__ENST00000368678.8_1_6:112041256-112194621:-|nuORF	REV__ENST00000368678.8_1_6:112041256-112194621:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	391.225011	780.435469	-0.16668	-6.5208E-05	-0.047816	-1.8707E-05	-0.21449	-8.3915E-05	391.22491162821717	123.53	0.65632	123.91	123.63	124.29	0.3766	-0.054564	0.00020265	NaN	0.79363	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26955000	+		44591	24001	32612	32877							0.0364691533441146
RRGILIRQL	9	Unmodified	_RRGILIRQL_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	A375_MHC_IP_R1	1	375.589111328125	3	375.584008	1123.73019	-0.04692	-1.7623E-05	0.33106	0.00012434	0.28414	0.00010672	375.5842214302489	38.166	0.35575	38.166	38.016	38.371	0					12	6	2	0	0	0	0.54799	1	12922	12922		17.443	5.9248	1	3017600			44592	1183	32613	32878	43509	43509					0.17327903753357532
RRGKNKERE	9	Unmodified	_RRGKNKERE_					0	0	0		ENSG00000005108|ENST00000423059|THSD7A	ENSG00000005108|ENST00000423059|THSD7A	ENSG00000005108|ENST00000423059|THSD7A	MULTI-MSMS	A375_MHC_IP_R2	2	587.2339477539062	2	586.833977	1171.6534	-0.60061	-0.00035246	1.6385	0.00096155	1.0379	0.00060909	586.8341660410432	127.56	1.9786	127.83	127.31	129.29	0.26592					91	38	3	0	0	0	0.70886	2	50206	50206;50443		6.2058	0.31518	1	14806000			44593	884	32614	32879	43510;43511	43510					0.07444060466241353
RRGLIQKVK	9	Unmodified	_RRGLIQKVK_					0	0	0			REV__ENST00000493178.1_1_10:14880401-14883177:+|nuORF	REV__ENST00000493178.1_1_10:14880401-14883177:+|nuORF	MSMS	A375_MHC_IP_R2	2	366.5976257324219	3	366.580375	1096.7193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.378	1	55.129	54.629	55.629	0.75075								0	0	0	0.15486	1	20519	20519		2.086	0	1		+		44594	25421	32615	32880	43512	43512					0.17480501379054658
RRGLRRRSLQE	11	Unmodified	_RRGLRRRSLQE_					0	0	0			REV__ENST00000324856.11_1_1:27022599-27022719:+|nuORF	REV__ENST00000324856.11_1_1:27022599-27022719:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	476.684814453125	3	476.286913	1425.83891	-0.88183	-0.00042001	2.9721	0.0014156	2.0903	0.00099558	476.62359043918974	141.51	1.1247	141.51	140.8	141.93	0					27	21	2	0	0	0	0.73809	1	54171	54171		0.40827	0	1	996700	+		44595	23593	32616	32881	43513	43513					0.1430246298568818
RRGQLTSPPPL	11	Unmodified	_RRGQLTSPPPL_					0	0	0			REV__MBD6|p.Q694Pfs*23|1|0.4|ENSG00000166987|chr12:57527218-57527219|-/C|frameshift_variant	REV__MBD6|p.Q694Pfs*23|1|0.4|ENSG00000166987|chr12:57527218-57527219|-/C|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	611.7559204101562	2	611.356754	1220.69895	-0.31665	-0.00019359	-0.18795	-0.00011491	-0.5046	-0.00030849	611.3566719801712	137.69	1.8752	137.77	137.3	139.18	0.083969					50	36	2	0	0	0	0.7359	1	53996	53996		3.2813	1.2216	1	909970	+		44596	20724	32617	32882	43514	43514					0.09743285928584555
RRGQVGPV	8	Unmodified	_RRGQVGPV_					0	0	0		ENST00000462875.1_1_6:31609004-31609235:-|nuORF	ENST00000462875.1_1_6:31609004-31609235:-|nuORF	ENST00000462875.1_1_6:31609004-31609235:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	435.1590576171875	2	434.759218	867.503883	-0.25106	-0.00010915	0.15484	6.732E-05	-0.096216	-4.1831E-05	434.75907264850497	126.87	1.0109	127.13	126.5	127.51	0.26593					23	19	2	0	0	0	0.7779	1	49665	49665		2.5775	0	1	10356000			44597	12208	32618	32883	43515	43515					0.06483159914284897
RRGQVGPV	8	Unmodified	_RRGQVGPV_					0	0	0		ENST00000462875.1_1_6:31609004-31609235:-|nuORF	ENST00000462875.1_1_6:31609004-31609235:-|nuORF	ENST00000462875.1_1_6:31609004-31609235:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	434.759218	867.503883	0.27167	0.00011811	-0.78621	-0.00034181	-0.51454	-0.0002237	434.75883137270694	127.18	0.30414	127.18	126.91	127.22	0	0.024152	-0.00068506	NaN	2.5775	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11067000			44598	12208	32618	32883							0.06483159914284897
RRGRGALLPGA	11	Unmodified	_RRGRGALLPGA_					0	0	0			REV__ENST00000244565.7_1_6:40995845-40996025:-|nuORF	REV__ENST00000244565.7_1_6:40995845-40996025:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	375.29730224609375	3	375.231746	1122.67341	0.307	0.0001152	-0.86565	-0.00032482	-0.55865	-0.00020962	375.2314092341146	87.668	0.50814	87.668	87.34	87.848	0					15	9	3	0	0	0	0.72877	1	32140	32140		5.0475	5.0475	1	3127900	+		44599	23104	32619	32884	43516	43516					0.11697856196838075
RRHHRKRAKDV	11	Unmodified	_RRHHRKRAKDV_					0	0	0			REV__ENST00000488757.5_1_6:29644775-29644817:-|nuORF	REV__ENST00000488757.5_1_6:29644775-29644817:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	486.68231201171875	3	486.95902	1457.85523	-0.58847	-0.00028656	0.27277	0.00013283	-0.3157	-0.00015373	486.95910049228854	138.98	1.1687	138.98	138.81	139.98	0					27	22	2	0	0	0	1.0008	1	53485	53485		0.08335	0.08335	1	2858400	+		44600	25358	32620	32885	43517	43517					0.1446158894243581
RRHKKRIQRLW	11	Unmodified	_RRHKKRIQRLW_					0	0	0		ENST00000461933.1_1_3:169684610-169686205:+|nuORF	ENST00000461933.1_1_3:169684610-169686205:+|nuORF	ENST00000461933.1_1_3:169684610-169686205:+|nuORF	MSMS	A375_MHC_IP_R2	2	788.9949951171875	2	788.992209	1575.96987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.77	1	117.42	116.92	117.92	0.65962								0	0	0	0.1636	1	44154	44154		0	0	1				44601	12194	32621	32886	43518	43518					0.20491898424393185
RRHKRRRRKQ	10	Unmodified	_RRHKRRRRKQ_					0	0	0		ENST00000478247.1_1_3:183882805-183888540:+|nuORF;nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3;DVL3|p.N246Tfs*37|1|0.31|ENSG00000161202|chr3:184165464-184165464|A/-|frameshift_variant	ENST00000478247.1_1_3:183882805-183888540:+|nuORF	ENST00000478247.1_1_3:183882805-183888540:+|nuORF	MSMS	A375_MHC_IP_R2	2	739.3690795898438	2	738.9696	1475.92465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.8	1	109.55	109.05	110.05	0.74684								0	0	0	0.15629	1	41076	41076		0.40072	0.093686	1				44602	6466	32622	32887	43519	43519					0.20572092681845788
RRHKTYLIA	9	Unmodified	_RRHKTYLIA_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-MSMS	A375_MHC_IP_R2	2	579.7484741210938	2	579.348732	1156.68291	-0.064954	-3.7631E-05	-0.30087	-0.00017431	-0.36583	-0.00021194	579.3487876532412	145.2	0.74803	145.22	144.8	145.55	0.021408					70	44	3	0	0	0	0.75523	1	56671	56671		2.0598	0	1	446070	+		44603	19022	32623	32888	43520	43520					0.11083624482353116
RRHKTYLIA	9	Unmodified	_RRHKTYLIA_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	579.348732	1156.68291	-0.55244	-0.00032006	0.36697	0.0002126	-0.18547	-0.00010745	579.3491794438631	145.07	0.75755	145.07	144.77	145.53	0	-0.07554	0.00039948	NaN	2.0598	64	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	631820	+		44604	19022	32623	32888							0.11083624482353116
RRHKTYLIA	9	Unmodified	_RRHKTYLIA_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	579.348732	1156.68291	-0.064954	-3.7631E-05	-0.30087	-0.00017431	-0.36583	-0.00021194	579.3487876532412	145.2	0.74803	145.22	144.8	145.55	0.021408	0.07554	-0.00037435	NaN	2.0598	70	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	446070	+		44605	19022	32623	32888							0.11083624482353116
RRHRDQGRLTW	11	Unmodified	_RRHRDQGRLTW_					0	0	0		ENST00000426597.2_1_1:32700614-32705592:-|nuORF	ENST00000426597.2_1_1:32700614-32705592:-|nuORF	ENST00000426597.2_1_1:32700614-32705592:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	370.5964660644531	4	370.955267	1479.79196	0.11416	4.235E-05	0.59105	0.00021925	0.70521	0.0002616	370.9554807634686	29.971	0.55881	30.67	30.434	30.993	0.69872					24	10	4	0	0	0	1.0014	1	10601	10601		0.094841	0	1	8630000			44606	11810	32624	32889	43521	43521					0.07125603434565164
RRHTYLFL	8	Unmodified	_RRHTYLFL_					0	0	0			REV__nc|ENSG00000204084|P32019-4|INPP5B	REV__nc|ENSG00000204084|P32019-4|INPP5B	MULTI-SECPEP	A375_MHC_IP_R2	2	552.6963500976562	2	553.3169	1104.61925	-0.86669	-0.00047955	-1.313	-0.00072651	-2.1797	-0.0012061	553.3161900198961	65.205	0.50729	65.943	65.715	66.222	0.73811					22	9	3	0	0	0	0.96266	1	24801	24801		11.64	0.81637	1	1848500	+		44607	22485	32625	32890	43522	43522					0.07112264045258598
RRHVKIEHDWR	11	Unmodified	_RRHVKIEHDWR_					0	0	0		ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MSMS	A375_MHC_IP_R2	2	766.7374267578125	2	766.421282	1530.82801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.47	1	125.77	125.27	126.27	0.2951								0	0	0	0.16312	1	48932	48932		2.4985	1.169	1				44608	2872	32626	32891	43523	43523					0.0838306061136791
RRHWGGNVL	9	Unmodified	_RRHWGGNVL_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000492798.1_1_9:136217794-136218218:+|nuORF;ENST00000463740.5_1_9:136217403-136218218:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	A375_MHC_IP_R1	1	365.93707275390625	3	365.537058	1093.58934	0.23343	8.5328E-05	-0.098367	-3.5957E-05	0.13506	4.9371E-05	365.53703258702785	28.364	0.85733	28.364	28.088	28.945	0					53	16	5	0	0	0	0.066859	1	8719	8719		57.722	37.307	1	114690000			44609	5729	32627	32892	43524	43524					0.046293250999497104
RRHWGGNVL	9	Unmodified	_RRHWGGNVL_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000492798.1_1_9:136217794-136218218:+|nuORF;ENST00000463740.5_1_9:136217403-136218218:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	A375_MHC_IP_R1	1	548.2015380859375	2	547.801949	1093.58934	-0.53586	-0.00029355	-0.31155	-0.00017067	-0.84741	-0.00046421	547.8018333907406	28.359	0.50637	28.359	28.188	28.694	0					20	9	3	0	0	0	0.22013	1	8755	8755		39.957	39.957	1	9567600			44610	5729	32627	32892	43525	43525					0.046293250999497104
RRHWGGNVL	9	Unmodified	_RRHWGGNVL_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000492798.1_1_9:136217794-136218218:+|nuORF;ENST00000463740.5_1_9:136217403-136218218:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-SECPEP	A375_MHC_IP_R2	2	365.9371337890625	3	365.537058	1093.58934	0.12254	4.4794E-05	-0.17827	-6.5165E-05	-0.055731	-2.0372E-05	365.5370263563958	27.446	0.86256	28.125	27.843	28.706	0.67857					57	16	5	0	0	0	0.1277	1	9353	9353		49.554	29.14	1	143520000			44611	5729	32627	32892	43526	43526					0.046293250999497104
RRHWGGNVL	9	Unmodified	_RRHWGGNVL_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000492798.1_1_9:136217794-136218218:+|nuORF;ENST00000463740.5_1_9:136217403-136218218:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MATCH	A375_MHC_IP_R2	2		2	547.801949	1093.58934	-0.7145	-0.0003914	-0.17101	-9.368E-05	-0.88551	-0.00048509	547.8017903032975	27.465	0.3559	28.144	27.945	28.301	0.67857	-0.1078	7.7836E-05	NaN	39.957	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8742700			44612	5729	32627	32892							0.046293250999497104
RRIDITAKL	9	Unmodified	_RRIDITAKL_					0	0	0		nc|ENSG00000010295|Q0D2I5|IFFO1;nc|ENSG00000010295|Q0D2I5-7|IFFO1;nc|ENSG00000010295|Q0D2I5-4|IFFO1;nc|ENSG00000010295|Q0D2I5-5|IFFO1;ENSG00000010295|ENST00000619571|IFFO1;ENST00000471408.5_1_12:6649651-6659338:-|nuORF;ENST00000488007.5_1_12:6649651-6660148:-|nuORF;ENSG00000169991|ENST00000455833|IFFO2	nc|ENSG00000010295|Q0D2I5|IFFO1;ENSG00000169991|ENST00000455833|IFFO2	ENSG00000169991|ENST00000455833|IFFO2	MULTI-MSMS	A375_MHC_IP_R1	1	362.96441650390625	3	362.564502	1084.67168	0.10607	3.8458E-05	-0.36466	-0.00013221	-0.25858	-9.3753E-05	362.56431681649076	34.431	0.45404	34.431	34.203	34.657	0					21	8	3	0	0	0	0.023053	1	11353	11353		80.896	41.683	1	13088000			44613	7461;977	32628	32893	43527	43527					0.1327280238822368
RRIDITAKL	9	Unmodified	_RRIDITAKL_					0	0	0		nc|ENSG00000010295|Q0D2I5|IFFO1;nc|ENSG00000010295|Q0D2I5-7|IFFO1;nc|ENSG00000010295|Q0D2I5-4|IFFO1;nc|ENSG00000010295|Q0D2I5-5|IFFO1;ENSG00000010295|ENST00000619571|IFFO1;ENST00000471408.5_1_12:6649651-6659338:-|nuORF;ENST00000488007.5_1_12:6649651-6660148:-|nuORF;ENSG00000169991|ENST00000455833|IFFO2	nc|ENSG00000010295|Q0D2I5|IFFO1;ENSG00000169991|ENST00000455833|IFFO2	ENSG00000169991|ENST00000455833|IFFO2	MULTI-MSMS	A375_MHC_IP_R2	2	362.96417236328125	3	362.564502	1084.67168	-0.54713	-0.00019837	-0.27383	-9.9281E-05	-0.82096	-0.00029765	362.56442023548937	33.494	0.45681	34.246	34.043	34.5	0.75225					21	8	3	0	0	0	0.048392	1	11997	11997		64.927	13.512	1	10135000			44614	7461;977	32628	32893	43528	43528					0.1327280238822368
RRIRLLLQLVL	11	Unmodified	_RRIRLLLQLVL_					0	0	0			REV__ENST00000367869.1_3_6:134274441-134290035:+|nuORF	REV__ENST00000367869.1_3_6:134274441-134290035:+|nuORF	MSMS	A375_MHC_IP_R2	2	464.6485900878906	3	464.989034	1391.94527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.616	1	74.351	73.851	74.851	0.73541								0	0	0	0.16358	1	27941	27941		0.08335	0	1		+		44615	23981	32629	32894	43529	43529					0.2649782549831343
RRIRLWHRG	9	Unmodified	_RRIRLWHRG_					0	0	0		nc|ENSG00000130518|Q9H0B3-3|IQCN;ENST00000599638.2_1_19:18367992-18369432:-|nuORF;nc|ENSG00000130518|Q9H0B3-5|IQCN;nc|ENSG00000130518|Q9H0B3|IQCN;ENSG00000130518|ENST00000392413|IQCN	nc|ENSG00000130518|Q9H0B3-3|IQCN	nc|ENSG00000130518|Q9H0B3-3|IQCN	MULTI-MSMS	A375_MHC_IP_R1	1	625.7774047851562	2	625.378689	1248.74283	-0.90119	-0.00056359	-0.021608	-1.3513E-05	-0.9228	-0.0005771	625.3778282819221	149.38	2.1776	149.38	147.83	150	0					218	69	4	0	0	0	0.77827	1	56732	56732		0	0	1	1046400			44616	4249	32630	32895	43530	43530					0.1284035993624002
RRISIPAHVE	10	Unmodified	_RRISIPAHVE_					0	0	0		ENST00000383775.4_1_3:16302281-16306340:-|nuORF	ENST00000383775.4_1_3:16302281-16306340:-|nuORF	ENST00000383775.4_1_3:16302281-16306340:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1177.7015380859375	1	1177.68002	1176.67274	-0.10082	-0.00011873	-0.69118	-0.00081399	-0.792	-0.00093272	1177.679196302917	129.12	1.0705	129.12	128.63	129.7	0					31	20	2	0	0	0	0.70496	1	49869	49869		10.074	0	1	18671000			44617	11391	32631	32896	43531	43531					0.09147016757151505
RRISIPAHVE	10	Unmodified	_RRISIPAHVE_					0	0	0		ENST00000383775.4_1_3:16302281-16306340:-|nuORF	ENST00000383775.4_1_3:16302281-16306340:-|nuORF	ENST00000383775.4_1_3:16302281-16306340:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1178.301513671875	1	1177.68002	1176.67274	0.11617	0.00013682	-1.0129	-0.0011928	-0.89669	-0.001056	1177.6784679065775	128.83	1.1634	129.07	128.65	129.82	0.23946					38	22	2	0	0	0	0.70496	1	50922	50922		10.074	0	1	14949000			44618	11391	32631	32896	43532	43532					0.09147016757151505
RRKEEKYVTSF	11	Unmodified	_RRKEEKYVTSF_					0	0	0		ENST00000484212.5_1_7:115750864-115752046:-|nuORF	ENST00000484212.5_1_7:115750864-115752046:-|nuORF	ENST00000484212.5_1_7:115750864-115752046:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	482.3302307128906	3	481.596531	1441.76776	-0.67445	-0.00032481	-2.3275	-0.0011209	-3.002	-0.0014457	481.9306567009971	32.988	0.96745	33.725	33.213	34.181	0.73691					28	18	3	0	0	0	0.9907	1	11737	11737		9.2438	0	1	3882300			44619	12559	32632	32897	43533	43533					0.06454905437635716
RRKERKFKKIK	11	Unmodified	_RRKERKFKKIK_					0	0	0			REV__ENSG00000055483|ENST00000449938|USP36	REV__ENSG00000055483|ENST00000449938|USP36	MSMS	A375_MHC_IP_R1	1	758.7319946289062	2	758.999168	1515.98378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.728	1	44.728	44.228	45.228	0								0	0	0	0.1636	1	15620	15620		0	0	1		+		44620	16414	32633	32898	43534	43534					0.2464313113280241
RRKEVVVYL	9	Unmodified	_RRKEVVVYL_					0	0	0		nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-3|NUP98	nc|ENSG00000110713|P52948-2|NUP98	nc|ENSG00000110713|P52948-2|NUP98	MSMS	A375_MHC_IP_R1	1	387.9485168457031	3	387.908269	1160.70298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.591	1	34.591	34.091	35.091	0								0	0	0	0.15486	1	11417	11417		7.1017	0.90987	1				44621	2942	32634	32899	43535	43535					0.12905375422337784
RRKFVWRIRHF	11	Unmodified	_RRKFVWRIRHF_					0	0	0			REV__ENSG00000228607|ENST00000453129|CLDN25	REV__ENSG00000228607|ENST00000453129|CLDN25	MSMS	A375_MHC_IP_R1	1	800.532958984375	2	800.976028	1599.9375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.3	1	117.3	116.8	117.8	0								0	0	0	0.16354	1	43060	43060		0.30703	0.30703	1		+		44622	22736	32635	32900	43536	43536					0.16153111021367295
RRKGMGLTQQ	10	Unmodified	_RRKGMGLTQQ_					0	0	0			REV__ENSG00000162757|ENST00000294811|C1orf74	REV__ENSG00000162757|ENST00000294811|C1orf74	MULTI-SECPEP	A375_MHC_IP_R1	1	392.6326904296875	3	392.22063	1173.64006	0.21388	8.389E-05	-0.39497	-0.00015492	-0.18109	-7.1026E-05	392.2203773639919	44.112	0.35925	44.112	43.959	44.318	0					11	6	2	0	0	0	0.90513	1	15450	15450		10.899	7.0226	1	1212300	+		44623	20304	32636	32901	43537	43537					0.060184863626318474
RRKGTGKS	8	Unmodified	_RRKGTGKS_					0	0	0			REV__ENSG00000203485|ENST00000392634|INF2	REV__ENSG00000203485|ENST00000392634|INF2	MULTI-MSMS	A375_MHC_IP_R1	1	445.6700744628906	2	445.26995	888.525347	-0.026264	-1.1695E-05	0.48779	0.0002172	0.46152	0.0002055	445.2699167915085	104.09	1.3736	104.09	103.12	104.49	0					49	26	3	0	0	0	0.77861	1	38250	38250		0	0	1	3132900	+		44624	22462	32637	32902	43538	43538					0.07662544943013927
RRKHKRRPKVK	11	Unmodified	_RRKHKRRPKVK_					0	0	0		ENSG00000114857|ENST00000232978|NKTR;ENST00000472127.1_1_3:42672642-42674322:+|nuORF	ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	MULTI-SECPEP	A375_MHC_IP_R1	1	744.4383544921875	2	744.994752	1487.97495	-0.48692	-0.00036275	-2.7819	-0.0020725	-3.2688	-0.0024352	745.4940392890301	125.67	0.35262	125.67	125.45	125.8	0					9	6	2	0	0	0	0.99955	1	47844	47844		2.9952	2.9952	1	15894000			44625	3251	32638	32903	43539	43539					0.25048202286984633
RRKHNRLRRYI	11	Unmodified	_RRKHNRLRRYI_					0	0	0			REV__BMP5|p.E47K|1|0.39|ENSG00000112175|chr6:55874727-55874727|C/T|missense_variant	REV__BMP5|p.E47K|1|0.39|ENSG00000112175|chr6:55874727-55874727|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	523.721435546875	3	523.322069	1566.94438	-0.84789	-0.00044372	0.016398	8.5816E-06	-0.83149	-0.00043514	523.3220308890124	143.09	0.75676	143.09	142.69	143.45	0					22	14	3	0	0	0	0.73934	1	54918	54918		0	0	1	1568900	+		44626	15515	32639	32904	43540	43540					0.1835842390196376
RRKHNRLRRYI	11	Unmodified	_RRKHNRLRRYI_					0	0	0			REV__BMP5|p.E47K|1|0.39|ENSG00000112175|chr6:55874727-55874727|C/T|missense_variant	REV__BMP5|p.E47K|1|0.39|ENSG00000112175|chr6:55874727-55874727|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	523.322069	1566.94438	-0.84789	-0.00044372	0.016398	8.5816E-06	-0.83149	-0.00043514	523.3220308890124	143.09	0.75676	143.09	142.69	143.45	0	-0.021936	7.6777E-05	NaN	0	22	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1568900	+		44627	15515	32639	32904							0.1835842390196376
RRKITRYT	8	Unmodified	_RRKITRYT_					0	0	0		chrX:101408307-101411936|465|30.84|0.0|21.56|+|1|None,RPL36A-HNRNPH2|1	chrX:101408307-101411936|465|30.84|0.0|21.56|+|1|None,RPL36A-HNRNPH2|1	chrX:101408307-101411936|465|30.84|0.0|21.56|+|1|None,RPL36A-HNRNPH2|1	MULTI-SECPEP	A375_MHC_IP_R2	2	364.5891418457031	3	365.22448	1092.65161	-0.23461	-8.5684E-05	0.139	5.0766E-05	-0.095607	-3.4918E-05	365.55884134167536	19.032	0.40093	19.635	19.483	19.884	0.60308					12	7	3	0	0	0	0.96873	1	5642	5642		17.113	8.6686	1	1728100			44628	519	32640	32905	43541	43541					0.10899051448268438
RRKKFERRIRF	11	Unmodified	_RRKKFERRIRF_					0	0	0			REV__ENST00000457348.5_1_1:203269502-203269697:-|nuORF	REV__ENST00000457348.5_1_1:203269502-203269697:-|nuORF	MSMS	A375_MHC_IP_R2	2	796.4912109375	2	796.492042	1590.96953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.059	1	87.792	87.292	88.292	0.733								0	0	0	0.16353	1	33108	33108		0.35063	0.043601	1		+		44629	24943	32641	32906	43542	43542					0.19768478704531844
RRKKHQRRFYW	11	Unmodified	_RRKKHQRRFYW_					0	0	0		XKR6|p.E271K|1|0.28|ENSG00000171044|chr8:10924784-10924784|C/T|missense_variant	XKR6|p.E271K|1|0.28|ENSG00000171044|chr8:10924784-10924784|C/T|missense_variant	XKR6|p.E271K|1|0.28|ENSG00000171044|chr8:10924784-10924784|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	554.7186279296875	3	554.318436	1659.93348	-0.42106	-0.0002334	0.12775	7.0816E-05	-0.29331	-0.00016259	554.318707900402	20.562	0.45902	20.562	20.334	20.793	0					21	8	3	0	0	0	0.73934	2	5308	5308;5348		0	0	1	1344100			44630	30170	32642	32907	43543;43544	43543					0.12991021527682278
RRKKHQRRFYW	11	Unmodified	_RRKKHQRRFYW_					0	0	0		XKR6|p.E271K|1|0.28|ENSG00000171044|chr8:10924784-10924784|C/T|missense_variant	XKR6|p.E271K|1|0.28|ENSG00000171044|chr8:10924784-10924784|C/T|missense_variant	XKR6|p.E271K|1|0.28|ENSG00000171044|chr8:10924784-10924784|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	554.7182006835938	3	554.318436	1659.93348	-1.0498	-0.00058191	0.3623	0.00020083	-0.68747	-0.00038108	554.3187776394581	19.099	0.35086	19.702	19.533	19.884	0.60308					13	6	3	0	0	0	0.73934	1	5873	5873		0	0	1	3063000			44631	30170	32642	32907	43545	43545					0.12991021527682278
RRKKHQRRFYW	11	Unmodified	_RRKKHQRRFYW_					0	0	0		XKR6|p.E271K|1|0.28|ENSG00000171044|chr8:10924784-10924784|C/T|missense_variant	XKR6|p.E271K|1|0.28|ENSG00000171044|chr8:10924784-10924784|C/T|missense_variant	XKR6|p.E271K|1|0.28|ENSG00000171044|chr8:10924784-10924784|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	415.8759460449219	4	415.990646	1659.93348	-0.29618	-0.00012321	0.22927	9.5375E-05	-0.066905	-2.7832E-05	415.9906649696113	19.107	0.40163	19.71	19.533	19.935	0.60308					18	7	3	0	0	0	1.0014	1	5921	5921		0.08335	0.08335	1	2687700			44632	30170	32642	32907	43546	43546					0.12991021527682278
RRKKHQRRFYW	11	Unmodified	_RRKKHQRRFYW_					0	0	0		XKR6|p.E271K|1|0.28|ENSG00000171044|chr8:10924784-10924784|C/T|missense_variant	XKR6|p.E271K|1|0.28|ENSG00000171044|chr8:10924784-10924784|C/T|missense_variant	XKR6|p.E271K|1|0.28|ENSG00000171044|chr8:10924784-10924784|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	554.215576171875	3	554.318436	1659.93348	-0.85286	-0.00047276	-0.18466	-0.00010236	-1.0375	-0.00057512	554.3172869714467	96.567	0.35429	97.323	97.115	97.469	0.75586					9	6	2	0	0	0	1.0015	1	36705	36705		0.094841	0	1	948980			44633	30170	32642	32907	43547	43547					0.12991021527682278
RRKKHQRRFYW	11	Unmodified	_RRKKHQRRFYW_					0	0	0		XKR6|p.E271K|1|0.28|ENSG00000171044|chr8:10924784-10924784|C/T|missense_variant	XKR6|p.E271K|1|0.28|ENSG00000171044|chr8:10924784-10924784|C/T|missense_variant	XKR6|p.E271K|1|0.28|ENSG00000171044|chr8:10924784-10924784|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	554.1951904296875	3	554.318436	1659.93348	-0.71277	-0.0003951	0.18901	0.00010477	-0.52377	-0.00029033	554.3186486132515	88.118	0.15121	88.85	88.774	88.925	0.7318					4	2	2	0	0	0	1.0015	1	33532	33532		0.094841	0.094841	1	1452900			44634	30170	32642	32907	43548	43548					0.12991021527682278
RRKKKKGIKRK	11	Unmodified	_RRKKKKGIKRK_					0	0	0		GON4L|p.T250I|1|0.33|ENSG00000116580|chr1:155822425-155822425|G/A|missense_variant	GON4L|p.T250I|1|0.33|ENSG00000116580|chr1:155822425-155822425|G/A|missense_variant	GON4L|p.T250I|1|0.33|ENSG00000116580|chr1:155822425-155822425|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	713.5040283203125	2	713.501878	1424.9892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.629	1	90.361	89.861	90.861	0.7318								0	0	0	0.1636	1	34106	34106		0	0	1				44635	14058	32643	32908	43549	43549					0.2937085471528462
RRKKKKKYRK	10	Unmodified	_RRKKKKKYRK_					0	0	0			REV__ENSG00000166012|ENST00000448108|TAF1D	REV__ENSG00000166012|ENST00000448108|TAF1D	MSMS	A375_MHC_IP_R2	2	709.7992553710938	2	709.980779	1417.947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.028	1	98.788	98.288	99.288	0.75977								0	0	0	0.15642	1	37197	37197		0	0	1		+		44636	20644	32644	32909	43550	43550					0.2547487930692114
RRKKKQKYSRQ	11	Unmodified	_RRKKKQKYSRQ_					0	0	0			REV__nc|ENSG00000085224|P46100-2|ATRX	REV__nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	A375_MHC_IP_R2	2	753.8612060546875	2	753.460407	1504.90626	-0.69076	-0.00052046	0.52411	0.0003949	-0.16665	-0.00012557	753.4605179974936	140.06	0.36108	140.12	139.85	140.21	0.059921					15	6	3	0	0	0	0.73906	1	54835	54835		0.26902	0	1	2291400	+		44637	16830	32645	32910	43551	43551					0.17400493196646494
RRKKKYQKRMK	11	Unmodified	_RRKKKYQKRMK_					0	0	0		ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-MSMS	A375_MHC_IP_R1	1	775.880859375	2	775.482828	1548.9511	-0.8222	-0.0006376	-0.65757	-0.00050993	-1.4798	-0.0011475	775.482013816061	149.31	1.2649	149.31	148.71	149.97	0					61	45	2	0	0	0	0.73934	1	57024	57024		0	0	1	178130			44638	3897	32646	32911	43552	43552					0.19858600738302812
RRKKKYQKRMK	11	Unmodified	_RRKKKYQKRMK_					0	0	0		ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-SECPEP	A375_MHC_IP_R2	2	774.8965454101562	2	775.482828	1548.9511	-0.75934	-0.00058885	-0.55013	-0.00042661	-1.3095	-0.0010155	775.482177663466	149.57	0.79514	149.59	149.01	149.8	0.01825					47	27	2	0	0	0	1.0015	1	58051	58051		0	0	1	119660			44639	3897	32646	32911	43553	43553					0.19858600738302812
RRKKLHSEV	9	Unmodified	_RRKKLHSEV_					0	0	0		ENST00000261038.5_1_3:122598211-122598370:+|nuORF	ENST00000261038.5_1_3:122598211-122598370:+|nuORF	ENST00000261038.5_1_3:122598211-122598370:+|nuORF	MSMS	A375_MHC_IP_R1	1	576.9161987304688	2	576.851638	1151.68872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.15	1	143.15	142.65	143.65	0								0	0	0	0.15486	1	54922	54922		2.0598	0	1				44640	10273	32647	32912	43554	43554					0.1189472299404315
RRKKRKKKRKK	11	Unmodified	_RRKKRKKKRKK_					0	0	0		ENST00000216190.12_1_22:36906978-36907630:-|nuORF	ENST00000216190.12_1_22:36906978-36907630:-|nuORF	ENST00000216190.12_1_22:36906978-36907630:-|nuORF	MSMS	A375_MHC_IP_R1	1	513.9673461914062	3	514.03386	1539.07975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.931	1	20.931	20.431	21.431	0								0	0	0	0.1636	1	5437	5437		0	0	1				44641	10093	32648	32913	43555	43555					0.3317732376353888
RRKKRKKKRKK	11	Unmodified	_RRKKRKKKRKK_					0	0	0		ENST00000216190.12_1_22:36906978-36907630:-|nuORF	ENST00000216190.12_1_22:36906978-36907630:-|nuORF	ENST00000216190.12_1_22:36906978-36907630:-|nuORF	MSMS	A375_MHC_IP_R1	1	513.9674682617188	3	514.03386	1539.07975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.487	1	21.487	20.987	21.987	0								0	0	0	0.1636	1	5657	5657		0	0	1				44642	10093	32648	32913	43556	43556					0.3317732376353888
RRKKRKKKRKK	11	Unmodified	_RRKKRKKKRKK_					0	0	0		ENST00000216190.12_1_22:36906978-36907630:-|nuORF	ENST00000216190.12_1_22:36906978-36907630:-|nuORF	ENST00000216190.12_1_22:36906978-36907630:-|nuORF	MSMS	A375_MHC_IP_R1	1	513.9312133789062	3	514.03386	1539.07975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.897	1	51.897	51.397	52.397	0								0	0	0	0.1636	1	18437	18437		0	0	1				44643	10093	32648	32913	43557	43557					0.3317732376353888
RRKKRKKKRKK	11	Unmodified	_RRKKRKKKRKK_					0	0	0		ENST00000216190.12_1_22:36906978-36907630:-|nuORF	ENST00000216190.12_1_22:36906978-36907630:-|nuORF	ENST00000216190.12_1_22:36906978-36907630:-|nuORF	MSMS	A375_MHC_IP_R2	2	513.92431640625	3	514.03386	1539.07975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.583	1	24.213	23.713	24.713	0.63014								0	0	0	0.1636	1	7615	7615		0	0	1				44644	10093	32648	32913	43558	43558					0.3317732376353888
RRKKRKKKRKK	11	Unmodified	_RRKKRKKKRKK_					0	0	0		ENST00000216190.12_1_22:36906978-36907630:-|nuORF	ENST00000216190.12_1_22:36906978-36907630:-|nuORF	ENST00000216190.12_1_22:36906978-36907630:-|nuORF	MSMS	A375_MHC_IP_R2	2	513.9674682617188	3	514.03386	1539.07975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.108	1	24.752	24.252	25.252	0.64368								0	0	0	0.1636	1	7866	7866		0	0	1				44645	10093	32648	32913	43559	43559					0.3317732376353888
RRKKRKKKRKK	11	Unmodified	_RRKKRKKKRKK_					0	0	0		ENST00000216190.12_1_22:36906978-36907630:-|nuORF	ENST00000216190.12_1_22:36906978-36907630:-|nuORF	ENST00000216190.12_1_22:36906978-36907630:-|nuORF	MSMS	A375_MHC_IP_R2	2	513.9668579101562	3	514.03386	1539.07975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.823	1	25.466	24.966	25.966	0.64368								0	0	0	0.16358	1	8218	8218		0.08335	0.08335	1				44646	10093	32648	32913	43560	43560					0.3317732376353888
RRKKRKLPVFK	11	Unmodified	_RRKKRKLPVFK_					0	0	0		ENST00000427497.3_1_17:17110364-17131447:-|nuORF	ENST00000427497.3_1_17:17110364-17131447:-|nuORF	ENST00000427497.3_1_17:17110364-17131447:-|nuORF	MSMS	A375_MHC_IP_R1	1	728.4915161132812	2	728.490979	1454.96741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.19	1	109.19	108.69	109.69	0								0	0	0	0.16354	1	40053	40053		0.30703	0	1				44647	11821	32649	32914	43561	43561					0.25812049966702943
RRKKSFSR	8	Unmodified	_RRKKSFSR_					0	0	0			REV__ENSG00000139767|ENST00000267260|SRRM4	REV__ENSG00000139767|ENST00000267260|SRRM4	MSMS	A375_MHC_IP_R2	2	532.89013671875	2	532.825424	1063.63629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.66	1	143.68	143.18	144.18	0.024414								0	0	0	0.16876	1	56137	56137		5.2307	0	1		+		44648	19181	32650	32915	43562	43562					0.107021846510861
RRKKVRRPFQR	11	Unmodified	_RRKKVRRPFQR_					0	0	0		ENSG00000135392|ENST00000678005|DNAJC14	ENSG00000135392|ENST00000678005|DNAJC14	ENSG00000135392|ENST00000678005|DNAJC14	MSMS	A375_MHC_IP_R1	1	764.0631103515625	2	763.984384	1525.95422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.45	1	102.45	101.95	102.95	0								0	0	0	0.16355	1	37652	37652		0.26902	0.26902	1				44649	4679	32651	32916	43563	43563					0.21227611907329447
RRKLHQRNKRQ	11	Unmodified	_RRKLHQRNKRQ_					0	0	0		ENST00000459737.5_1_14:56079280-56084690:+|nuORF	ENST00000459737.5_1_14:56079280-56084690:+|nuORF	ENST00000459737.5_1_14:56079280-56084690:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	507.7093200683594	3	507.309941	1518.90799	-0.66058	-0.00033512	-0.069191	-3.5101E-05	-0.72977	-0.00037022	507.30978780381827	133.99	1.9289	133.99	133.56	135.49	0					111	37	5	0	0	0	0.73886	2	51691	51691;51907		0.45452	0.087843	1	44856000			44650	12154	32652	32917	43564;43565	43564					0.16929547005247514
RRKLLPLL	8	Unmodified	_RRKLLPLL_					0	0	0		ENST00000399247.6_1_6:29694759-29696203:-|nuORF	ENST00000399247.6_1_6:29694759-29696203:-|nuORF	ENST00000399247.6_1_6:29694759-29696203:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	505.2552185058594	2	504.855661	1007.69677	-0.69883	-0.00035281	0.13963	7.0492E-05	-0.5592	-0.00028232	504.8555525802383	138.54	0.20468	138.54	138.41	138.61	0					5	3	2	0	0	0	0.972	1	53310	53310		0	0	1	1316900			44651	11537	32653	32918	43566	43566					0.1932290198147939
RRKLLPLL	8	Unmodified	_RRKLLPLL_					0	0	0		ENST00000399247.6_1_6:29694759-29696203:-|nuORF	ENST00000399247.6_1_6:29694759-29696203:-|nuORF	ENST00000399247.6_1_6:29694759-29696203:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	505.2014465332031	2	504.855661	1007.69677	-0.4999	-0.00025238	0.26038	0.00013145	-0.23952	-0.00012092	504.85572605529524	138.43	0.25369	138.51	138.37	138.62	0.083969					7	4	2	0	0	0	0.972	1	54251	54251		0	0	1	695210			44652	11537	32653	32918	43567	43567					0.1932290198147939
RRKRKKIF	8	Unmodified	_RRKRKKIF_					0	0	0			REV__SNX33|p.E304K|1|0.14|ENSG00000173548|chr15:75650012-75650012|G/A|missense_variant	REV__SNX33|p.E304K|1|0.14|ENSG00000173548|chr15:75650012-75650012|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	566.78173828125	2	566.382909	1130.75126	-0.73383	-0.00041563	-0.52121	-0.00029521	-1.255	-0.00071083	566.3821923875049	147.54	0.18979	147.54	147.45	147.64	0					34	17	3	0	0	0	0.77861	1	56376	56376		0	0	1	145150	+		44653	28023	32654	32919	43568	43568					0.19111913852862017
RRKRKKIF	8	Unmodified	_RRKRKKIF_					0	0	0			REV__SNX33|p.E304K|1|0.14|ENSG00000173548|chr15:75650012-75650012|G/A|missense_variant	REV__SNX33|p.E304K|1|0.14|ENSG00000173548|chr15:75650012-75650012|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	566.382909	1130.75126	-0.73383	-0.00041563	-0.52121	-0.00029521	-1.255	-0.00071083	566.3821923875049	147.54	0.18979	147.54	147.45	147.64	0	-0.022082	8.0139E-06	NaN	0	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145150	+		44654	28023	32654	32919							0.19111913852862017
RRKRKKIF	8	Unmodified	_RRKRKKIF_					0	0	0			REV__SNX33|p.E304K|1|0.14|ENSG00000173548|chr15:75650012-75650012|G/A|missense_variant	REV__SNX33|p.E304K|1|0.14|ENSG00000173548|chr15:75650012-75650012|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	566.382909	1130.75126	-0.214	-0.00012121	-0.54669	-0.00030963	-0.76069	-0.00043084	566.3818786283462	147.56	0.22763	147.58	147.51	147.74	0.019913	0.022082	-2.0846E-05	NaN	0	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99924	+		44655	28023	32654	32919							0.19111913852862017
RRKRKPAH	8	Unmodified	_RRKRKPAH_					0	0	0			REV__nc|ENSG00000154743|Q8NCE0-5|TSEN2	REV__nc|ENSG00000154743|Q8NCE0-5|TSEN2	MULTI-SECPEP	A375_MHC_IP_R1	1	525.2333374023438	2	524.833583	1047.65261	-0.83859	-0.00044012	0.66113	0.00034698	-0.17746	-9.3139E-05	524.8336108455142	147.69	0.20923	147.69	147.6	147.81	0					27	18	2	0	0	0	0.972	1	56430	56430		0	0	1	187300	+		44656	19894	32655	32920	43569	43569					0.13069310607852458
RRKRKPAH	8	Unmodified	_RRKRKPAH_					0	0	0			REV__nc|ENSG00000154743|Q8NCE0-5|TSEN2	REV__nc|ENSG00000154743|Q8NCE0-5|TSEN2	MULTI-MATCH	A375_MHC_IP_R2	2		2	524.833583	1047.65261	-0.31098	-0.00016321	0.10309	5.4106E-05	-0.20788	-0.0001091	524.8333062956868	147.69	0.22122	147.71	147.64	147.86	0.019913	0.01277	-0.00027503	NaN	0	26	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111430	+		44657	19894	32655	32920							0.13069310607852458
RRKRPRKPR	9	Unmodified	_RRKRPRKPR_					0	0	0			REV__ENSG00000099901|ENST00000430524|RANBP1	REV__ENSG00000099901|ENST00000430524|RANBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	625.8126831054688	2	625.413063	1248.81157	-0.89704	-0.00056102	0.59827	0.00037417	-0.29877	-0.00018685	625.4131865449268	147.09	0.18211	147.09	147.01	147.19	0					31	20	2	0	0	0	0.81896	1	56240	56240		0	0	1	109780	+		44658	17033	32656	32921	43570	43570					0.19712024235968784
RRKRPRKPR	9	Unmodified	_RRKRPRKPR_					0	0	0			REV__ENSG00000099901|ENST00000430524|RANBP1	REV__ENSG00000099901|ENST00000430524|RANBP1	MULTI-MATCH	A375_MHC_IP_R2	2		2	625.413063	1248.81157	-0.59973	-0.00037508	0.54051	0.00033804	-0.059224	-3.7039E-05	625.4131710738784	147.1	0.15729	147.12	147.04	147.19	0.019913	0.017785	-3.1903E-05	NaN	0	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140590	+		44659	17033	32656	32921							0.19712024235968784
RRKRRDRSWAV	11	Unmodified	_RRKRRDRSWAV_					0	0	0			REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	496.35833740234375	3	495.958908	1484.85489	-0.63956	-0.00031719	0.30312	0.00015033	-0.33644	-0.00016686	495.95900051042605	133.18	1.326	133.18	132.28	133.61	0					123	25	6	0	0	0	0.73897	4	51107	51107;51141;51384;51446		0.094841	0.094841	1	237680000	+		44660	27775	32657	32922	43571;43572;43573;43574	43571					0.13186169222581157
RRKRRDRSWAV	11	Unmodified	_RRKRRDRSWAV_					0	0	0			REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	743.8348999023438	2	743.434724	1484.85489	-0.78289	-0.00058203	0.40924	0.00030424	-0.37365	-0.00027778	743.4348863436137	133.19	1.2753	133.19	132.33	133.61	0					102	24	5	0	0	0	0.73897	1	51338	51338		0.35063	0	1	121250000	+		44661	27775	32657	32922	43575	43575					0.13186169222581157
RRKRRDRSWAV	11	Unmodified	_RRKRRDRSWAV_					0	0	0			REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	496.3586120605469	3	495.958908	1484.85489	-0.65296	-0.00032384	0.088199	4.3743E-05	-0.56476	-0.0002801	495.9589115151368	133.99	5.3563	133.99	133.56	138.91	0					307	104	6	0	0	0	0.73897	7	51558	51558;51771;51985;52195;52380;52581;52794		0.094841	0.094841	1	506820000	+		44662	27775	32657	32922	43576;43577;43578;43579;43580;43581;43582	43576					0.13186169222581157
RRKRRDRSWAV	11	Unmodified	_RRKRRDRSWAV_					0	0	0			REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	743.8336791992188	2	743.434724	1484.85489	-0.79606	-0.00059182	0.20951	0.00015576	-0.58655	-0.00043606	743.4347339127565	133.99	3.6718	133.99	133.56	137.23	0					227	71	6	0	0	0	0.73897	4	51772	51772;51987;52198;52721		0.35063	0.35063	1	248210000	+		44663	27775	32657	32922	43583;43584;43585;43586	43583					0.13186169222581157
RRKRRDRSWAV	11	Unmodified	_RRKRRDRSWAV_					0	0	0			REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	744.3560180664062	2	743.434724	1484.85489	-0.88323	-0.00065662	0.6982	0.00051907	-0.18503	-0.00013756	743.4348180234016	148.66	1.5156	148.66	147.8	149.31	0					75	34	3	0	0	0	0.73897	2	56683	56683;56857		0.35063	0.35063	1	388760	+		44664	27775	32657	32922	43587;43588	43587					0.13186169222581157
RRKRRDRSWAV	11	Unmodified	_RRKRRDRSWAV_					0	0	0			REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	496.3586120605469	3	495.958908	1484.85489	-0.40215	-0.00019945	0.14716	7.2988E-05	-0.25499	-0.00012646	495.95892408341234	133.11	1.3741	133.28	132.33	133.7	0.16487					130	26	6	0	0	0	0.73897	4	52304	52304;52346;52432;52526		0.094841	0.094841	1	265370000	+		44665	27775	32657	32922	43589;43590;43591;43592	43589					0.13186169222581157
RRKRRDRSWAV	11	Unmodified	_RRKRRDRSWAV_					0	0	0			REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	743.8342895507812	2	743.434724	1484.85489	-0.78673	-0.00058488	0.5028	0.0003738	-0.28393	-0.00021109	743.4349372141825	133.1	1.273	133.27	132.38	133.65	0.16487					98	24	5	0	0	0	0.73897	1	52328	52328		0.35063	0	1	126660000	+		44666	27775	32657	32922	43593	43593					0.13186169222581157
RRKRRDRSWAV	11	Unmodified	_RRKRRDRSWAV_					0	0	0			REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	743.9329223632812	2	743.434724	1484.85489	-0.75809	-0.00056359	0.39137	0.00029096	-0.36672	-0.00027264	743.4348355394042	133.92	3.0565	134.08	133.65	136.71	0.16487					213	59	6	0	0	0	0.73897	5	52656	52656;52765;52983;53204;53628		0.35063	0.35063	1	264310000	+		44667	27775	32657	32922	43594;43595;43596;43597;43598	43594					0.13186169222581157
RRKRRDRSWAV	11	Unmodified	_RRKRRDRSWAV_					0	0	0			REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	496.35888671875	3	495.958908	1484.85489	-0.37236	-0.00018467	0.048079	2.3845E-05	-0.32428	-0.00016083	495.9588867535267	133.92	5.4034	134.09	133.7	139.11	0.16489					338	105	6	0	0	0	0.73897	5	52745	52745;52961;53169;53555;53756		0.50596	0.41111	1	542900000	+		44668	27775	32657	32922	43599;43600;43601;43602;43603	43599					0.13186169222581157
RRKRRDRSWAV	11	Unmodified	_RRKRRDRSWAV_					0	0	0			REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	743.833740234375	2	743.434724	1484.85489	-0.65992	-0.0004906	0.44889	0.00033372	-0.21103	-0.00015689	743.4346133496468	148.61	1.3994	148.63	147.81	149.21	0.018707					85	37	3	0	0	0	0.73897	1	57660	57660		0.35063	0	1	338910	+		44669	27775	32657	32922	43604	43604					0.13186169222581157
RRKRRDRSWAV	11	Unmodified	_RRKRRDRSWAV_					0	0	0			REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	496.358642578125	3	495.958908	1484.85489	-0.2764	-0.00013708	-0.086624	-4.2962E-05	-0.36302	-0.00018004	496.29312761737526	139.38	1.3143	139.44	139	140.32	0.059906					57	25	4	0	0	0	1.0015	1	54607	54607		0	0	1	3680700	+		44670	27775	32657	32922	43605	43605					0.13186169222581157
RRKRRDRSWAV	11	Unmodified	_RRKRRDRSWAV_					0	0	0			REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	496.3588562011719	3	495.958908	1484.85489	-0.37236	-0.00018467	0.048079	2.3845E-05	-0.32428	-0.00016083	495.9588867535267	133.92	5.4034	134.09	133.7	139.11	0.16489					338	105	6	0	0	0	1.0015	1	53967	53967		0	0	1	542900000	+		44671	27775	32657	32922	43606	43606					0.13186169222581157
RRKRRDRSWAV	11	Unmodified	_RRKRRDRSWAV_					0	0	0			REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	REV__PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	743.17822265625	2	743.434724	1484.85489	-0.75809	-0.00056359	0.39137	0.00029096	-0.36672	-0.00027264	743.4348355394042	133.92	3.0565	134.08	133.65	136.71	0.16487					213	59	6	0	0	0	1.0014	1	53316	53316		0.35063	0.35063	1	264310000	+		44672	27775	32657	32922	43607	43607					0.13186169222581157
RRKRRIRVTVK	11	Unmodified	_RRKRRIRVTVK_					0	0	0			REV__ENST00000480896.5_1_21:47746291-47746405:+|nuORF	REV__ENST00000480896.5_1_21:47746291-47746405:+|nuORF	MSMS	A375_MHC_IP_R2	2	734.4932861328125	2	734.494585	1466.97462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.74	1	137.83	137.33	138.33	0.083969								0	0	0	0.1636	1	54047	54047		0	0	1		+		44673	25248	32658	32923	43608	43608					0.2598078256712597
RRKRRLKGLWR	11	Unmodified	_RRKRRLKGLWR_					0	0	0			REV__ENSG00000224109|ENST00000417339|CENPVL3	REV__ENSG00000224109|ENST00000417339|CENPVL3	MSMS	A375_MHC_IP_R1	1	763.1045532226562	2	762.994752	1523.97495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.021	1	81.021	80.521	81.521	0								0	0	0	0.1636	1	29605	29605		0	0	1		+		44674	22708	32659	32924	43609	43609					0.2339220228702743
RRKRRMKVKKK	11	Unmodified	_RRKRRMKVKKK_					0	0	0			REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B	REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B	MSMS	A375_MHC_IP_R2	2	757.5062866210938	2	757.506638	1512.99872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.804	1	82.547	82.047	83.047	0.74293								0	0	0	0.1636	1	31074	31074		0	0	1		+		44675	16901	32660	32925	43610	43610					0.26274299729152517
RRKRRNRFVKK	11	Unmodified	_RRKRRNRFVKK_					0	0	0		ENSG00000168135|ENST00000303592|KCNJ4	ENSG00000168135|ENST00000303592|KCNJ4	ENSG00000168135|ENST00000303592|KCNJ4	MSMS	A375_MHC_IP_R2	2	772.49755859375	2	772.497659	1542.98076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.896	1	59.643	59.143	60.143	0.74714								0	0	0	0.1636	1	22284	22284		0	0	1				44676	7268	32661	32926	43611	43611					0.23099300798639888
RRKRRRKKRKK	11	Unmodified	_RRKRRRKKRKK_					0	0	0		ENST00000216190.12_1_22:36906978-36907630:-|nuORF	ENST00000216190.12_1_22:36906978-36907630:-|nuORF	ENST00000216190.12_1_22:36906978-36907630:-|nuORF	MSMS	A375_MHC_IP_R1	1	798.7337646484375	2	798.553299	1595.09205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.9	1	117.9	117.4	118.4	0								0	0	0	0.1636	1	43342	43342		0	0	1				44677	10093	32662	32927	43612	43612					0.31830360226581433
RRKRRRKKRKK	11	Unmodified	_RRKRRRKKRKK_					0	0	0		ENST00000216190.12_1_22:36906978-36907630:-|nuORF	ENST00000216190.12_1_22:36906978-36907630:-|nuORF	ENST00000216190.12_1_22:36906978-36907630:-|nuORF	MSMS	A375_MHC_IP_R1	1	798.6814575195312	2	798.553299	1595.09205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.95	1	117.95	117.45	118.45	0								0	0	0	0.1636	1	43365	43365		0	0	1				44678	10093	32662	32927	43613	43613					0.31830360226581433
RRKSHRRHRHR	11	Unmodified	_RRKSHRRHRHR_					0	0	0		SLC4A10|p.G58R|1|0.35|ENSG00000144290|chr2:161804490-161804490|G/A|missense_variant	SLC4A10|p.G58R|1|0.35|ENSG00000144290|chr2:161804490-161804490|G/A|missense_variant	SLC4A10|p.G58R|1|0.35|ENSG00000144290|chr2:161804490-161804490|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	791.4681396484375	2	791.467755	1580.92096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.77	1	140.77	140.27	141.27	0								0	0	0	0.1636	1	54057	54057		0	0	1				44679	29185	32663	32928	43614	43614					0.15373422907987333
RRKVLHRD	8	Unmodified	_RRKVLHRD_					0	0	0		nc|ENSG00000059758|Q00537-2|CDK17;ENSG00000059758|ENST00000261211|CDK17	nc|ENSG00000059758|Q00537-2|CDK17	nc|ENSG00000059758|Q00537-2|CDK17	MSMS	A375_MHC_IP_R1	1	540.384033203125	2	540.330873	1078.64719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.45	1	140.45	139.95	140.95	0								0	0	0	0.16876	1	53944	53944		2.3027	0	1				44680	1305	32664	32929	43615	43615					0.1110158702535955
RRKVLHRD	8	Unmodified	_RRKVLHRD_					0	0	0		nc|ENSG00000059758|Q00537-2|CDK17;ENSG00000059758|ENST00000261211|CDK17	nc|ENSG00000059758|Q00537-2|CDK17	nc|ENSG00000059758|Q00537-2|CDK17	MSMS	A375_MHC_IP_R2	2	540.3849487304688	2	540.330873	1078.64719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.46	1	140.5	140	141	0.04216								0	0	0	0.16876	1	54982	54982		2.3027	0	1				44681	1305	32664	32929	43616	43616					0.1110158702535955
RRKVLHRD	8	Unmodified	_RRKVLHRD_					0	0	0		nc|ENSG00000059758|Q00537-2|CDK17;ENSG00000059758|ENST00000261211|CDK17	nc|ENSG00000059758|Q00537-2|CDK17	nc|ENSG00000059758|Q00537-2|CDK17	MSMS	A375_MHC_IP_R2	2	540.3848876953125	2	540.330873	1078.64719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.15	1	141.19	140.69	141.69	0.04216								0	0	0	0.16876	1	55220	55220		2.3027	0	1				44682	1305	32664	32929	43617	43617					0.1110158702535955
RRKWRRWPRYR	11	Unmodified	_RRKWRRWPRYR_					0	0	0			REV__ENST00000284061.7_2_17:54911541-54912223:+|nuORF	REV__ENST00000284061.7_2_17:54911541-54912223:+|nuORF	MSMS	A375_MHC_IP_R2	2	858.6224365234375	2	858.500733	1714.98691	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.27	1	119.8	119.3	120.3	0.5321								0	0	0	0.1636	1	45413	45413		0	0	1		+		44683	23333	32665	32930	43618	43618					0.1580181903018456
RRKWSQKRKYR	11	Unmodified	_RRKWSQKRKYR_					0	0	0		ENST00000589042.5_3_2:179517806-179527536:-|nuORF	ENST00000589042.5_3_2:179517806-179527536:-|nuORF	ENST00000589042.5_3_2:179517806-179527536:-|nuORF	MSMS	A375_MHC_IP_R1	1	796.3728637695312	2	796.473849	1590.93315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.65	1	135.65	135.15	136.15	0								0	0	0	0.1636	1	52283	52283		0	0	1				44684	13771	32666	32931	43619	43619					0.16131601807819607
RRLAPGTV	8	Unmodified	_RRLAPGTV_					0	0	0		ENST00000370828.3_1_X:132549182-132549308:-|nuORF	ENST00000370828.3_1_X:132549182-132549308:-|nuORF	ENST00000370828.3_1_X:132549182-132549308:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	435.6692810058594	2	435.269419	868.524284	-0.18232	-7.9358E-05	0.060178	2.6193E-05	-0.12214	-5.3165E-05	435.26937190747026	133.82	2.0358	133.98	133.8	135.84	0.16487					100	39	5	0	0	0	0.7779	1	52845	52845		2.5775	0	1	135290000			44685	11160	32667	32932	43620	43620					0.08476330574103486
RRLAQLPDRQR	11	Unmodified	_RRLAQLPDRQR_					0	0	0			REV__ENST00000496524.5_1_2:110922048-110962545:-|nuORF	REV__ENST00000496524.5_1_2:110922048-110962545:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	705.3163452148438	2	704.915833	1407.81711	-0.53296	-0.00037569	0.77512	0.00054639	0.24216	0.0001707	704.9163435039858	142.32	0.7075	142.36	141.82	142.53	0.030731					40	13	4	0	0	0	0.73809	1	55555	55555		1.1933	0	1	7551500	+		44686	19410	32668	32933	43621	43621					0.12951658237102492
RRLENRFYRRI	11	Unmodified	_RRLENRFYRRI_					0	0	0		nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;ENST00000473691.1_1_X:79938122-79975072:-|nuORF;nc|ENSG00000165288|Q6RI45-5|BRWD3	nc|ENSG00000165288|Q6RI45-3|BRWD3	nc|ENSG00000165288|Q6RI45-3|BRWD3	MULTI-SECPEP	A375_MHC_IP_R2	2	527.2081298828125	3	526.974447	1577.90151	-0.41266	-0.00021746	0.54714	0.00028833	0.13448	7.0868E-05	526.9740934001173	73.284	0.40726	74.02	73.785	74.192	0.73541					9	7	2	0	0	0	1.0015	1	27868	27868		0.073264	0	1	1245200			44687	6937	32669	32934	43622	43622					0.1356760905387091
RRLFRTTIF	9	Unmodified	_RRLFRTTIF_					0	0	0		ENST00000472200.1_1_3:136537513-136537627:+|nuORF	ENST00000472200.1_1_3:136537513-136537627:+|nuORF	ENST00000472200.1_1_3:136537513-136537627:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	404.29608154296875	3	403.912013	1208.71421	0.21327	8.6141E-05	-1.8314	-0.00073971	-1.6181	-0.00065357	403.9111559884463	43.748	0.4034	44.517	44.278	44.682	0.7691					13	7	2	0	0	0	0.775	1	16345	16345		10.8	4.1691	1	2259000			44688	12367	32670	32935	43623	43623					0.11820197516431108
RRLGRVRIRLL	11	Unmodified	_RRLGRVRIRLL_					0	0	0			REV__ENST00000518385.5_3_8:97506087-97614626:+|nuORF	REV__ENST00000518385.5_3_8:97506087-97614626:+|nuORF	MSMS	A375_MHC_IP_R2	2	704.8785400390625	2	704.478403	1406.94225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.48	1	144.51	144.01	145.01	0.024414								0	0	0	0.1636	1	56435	56435		0	0	1		+		44689	23432	32671	32936	43624	43624					0.2550599516416696
RRLHRPDR	8	Unmodified	_RRLHRPDR_					0	0	0			REV__ENSG00000147324|ENST00000276282|MFHAS1	REV__ENSG00000147324|ENST00000276282|MFHAS1	MULTI-SECPEP	A375_MHC_IP_R2	2	368.9354248046875	3	369.21984	1104.63769	0.19269	7.1146E-05	-1.0671	-0.000394	-0.87443	-0.00032286	369.5533924237103	62.574	0.30443	63.316	63.079	63.383	0.74263					6	5	2	0	0	0	0.972	1	23683	23683		5.7319	0	1	678930	+		44690	19585	32672	32937	43625	43625					0.08955818739832466
RRLHRPLL	8	Unmodified	_RRLHRPLL_					0	0	0		ENST00000236671.6_2_11:1774778-1774826:-|nuORF	ENST00000236671.6_2_11:1774778-1774826:-|nuORF	ENST00000236671.6_2_11:1774778-1774826:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	531.9819946289062	2	530.846159	1059.67777	-0.44777	-0.0002377	-1.0561	-0.00056061	-1.5038	-0.0007983	530.845398192222	142.15	0.40445	142.18	141.92	142.33	0.030731					14	7	3	0	0	0	0.77839	1	55534	55534		0.79363	0	1	509970			44691	10160	32673	32938	43626	43626					0.15031365410391118
RRLHVLKAL	9	Unmodified	_RRLHVLKAL_					0	0	0		ENST00000599063.5_1_19:48601366-48609786:-|nuORF;nc|ENSG00000105499|Q9UP65-2|PLA2G4C;ENSG00000105499|ENST00000599921|PLA2G4C;nc|ENSG00000105499|Q9UP65-3|PLA2G4C;ENST00000595899.5_1_19:48603093-48609786:-|nuORF;ENST00000600170.1_1_19:48607843-48608721:-|nuORF	ENST00000599063.5_1_19:48601366-48609786:-|nuORF	ENST00000599063.5_1_19:48601366-48609786:-|nuORF	MSMS	A375_MHC_IP_R2	2	369.6271057128906	3	369.248737	1104.72438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.23	1	97.985	97.485	98.485	0.75586								0	0	0	0.15486	1	36906	36906		0.26902	0	1				44692	2612	32674	32939	43627	43627					0.17620805241676862
RRLKIISTI	9	Unmodified	_RRLKIISTI_					0	0	0		CLSTN1|p.T624I|1|0.35|ENSG00000171603|chr1:9735479-9735479|G/A|missense_variant	CLSTN1|p.T624I|1|0.35|ENSG00000171603|chr1:9735479-9735479|G/A|missense_variant	CLSTN1|p.T624I|1|0.35|ENSG00000171603|chr1:9735479-9735479|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	367.95269775390625	3	367.248514	1098.72371	0.080607	2.9603E-05	2.7503	0.00101	2.8309	0.0010396	367.24950900949267	19.275	0.85812	19.275	19.221	20.079	0					26	13	3	0	0	0	0.69884	1	4741	4741		7.1017	0.47135	1	38751000			44693	540	32675	32940	43628	43628					0.17829965801979597
RRLKKIELRLI	11	Unmodified	_RRLKKIELRLI_					0	0	0			REV__ENSG00000120051|ENST00000369704|CFAP58	REV__ENSG00000120051|ENST00000369704|CFAP58	MSMS	A375_MHC_IP_R2	2	719.4911499023438	2	719.490645	1436.96674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.961	1	89.693	89.193	90.193	0.7318								0	0	0	0.1636	1	33859	33859		0	0	1		+		44694	18111	32676	32941	43629	43629					0.2657321052702173
RRLKKPKVLPL	11	Unmodified	_RRLKKPKVLPL_					0	0	0		ENST00000367265.7_1_1:202777435-202777672:-|nuORF	ENST00000367265.7_1_1:202777435-202777672:-|nuORF	ENST00000367265.7_1_1:202777435-202777672:-|nuORF	MSMS	A375_MHC_IP_R2	2	674.3016967773438	2	674.469181	1346.92381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.31	1	145.33	144.83	145.83	0.021408								0	0	0	0.1636	1	56735	56735		0	0	1				44695	11086	32677	32942	43630	43630					0.26422440469605135
RRLKRRQEERL	11	Unmodified	_RRLKRRQEERL_					0	0	0		nc|ENSG00000131188|Q8TB68-2|PRR7;ENSG00000131188|ENST00000323249|PRR7	nc|ENSG00000131188|Q8TB68-2|PRR7	nc|ENSG00000131188|Q8TB68-2|PRR7	MULTI-MSMS	A375_MHC_IP_R2	2	385.933837890625	4	385.73802	1538.92297	-0.4583	-0.00017678	0.49336	0.00019031	0.035056	1.3523E-05	385.73809227986635	37.51	0.30811	38.28	38.12	38.429	0.7709					9	5	3	0	0	0	0.73925	1	13734	13734		0.08335	0	1	1112100			44696	4315	32678	32943	43631	43631					0.17506994082577876
RRLLFPRLVK	10	Unmodified	_RRLLFPRLVK_					0	0	0			REV__nc|ENSG00000080503|P51531-2|SMARCA2;REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP;REV__ENST00000585799.5_1_19:11132109-11172489:+|nuORF	REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MSMS	A375_MHC_IP_R1	1	433.44757080078125	3	433.290825	1296.85064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.4299	1	2.4299	1.9299	2.9299	0								0	0	0	0.15642	1	556	556		0	0	1		+		44697	16749;16752;26380	32679	32944	43632	43632					0.2140931174697016
RRLLFPRLVK	10	Unmodified	_RRLLFPRLVK_					0	0	0			REV__nc|ENSG00000080503|P51531-2|SMARCA2;REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP;REV__ENST00000585799.5_1_19:11132109-11172489:+|nuORF	REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MSMS	A375_MHC_IP_R2	2	433.44708251953125	3	433.290825	1296.85064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.3943	1	3.8302	3.3302	4.3302	0.43585								0	0	0	0.15642	1	1102	1102		0	0	1		+		44698	16749;16752;26380	32679	32944	43633	43633					0.2140931174697016
RRLLGLYHLYL	11	Unmodified	_RRLLGLYHLYL_					0	0	0			REV__ENSG00000278685|ENST00000615129|IQCA1L	REV__ENSG00000278685|ENST00000615129|IQCA1L	MSMS	A375_MHC_IP_R2	2	708.823486328125	2	708.927346	1415.84014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.76	1	141.79	141.29	142.29	0.030731								0	0	0	0.16353	1	55434	55434		0.35063	0.043601	1		+		44699	22982	32680	32945	43634	43634					0.1488528430190854
RRLLHRWRRLR	11	Unmodified	_RRLLHRWRRLR_					0	0	0			REV__ENST00000342232.4_1_8:75233190-75233559:-|nuORF	REV__ENST00000342232.4_1_8:75233190-75233559:-|nuORF	MSMS	A375_MHC_IP_R1	1	809.62060546875	2	809.5111	1617.00765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.19	1	139.19	138.69	139.69	0								0	0	0	0.1636	1	53509	53509		0	0	1		+		44700	23738	32681	32946	43635	43635					0.2238240940985179
RRLPRLELLRR	11	Unmodified	_RRLPRLELLRR_					0	0	0		ENST00000581937.1_1_18:9678609-9679128:-|nuORF	ENST00000581937.1_1_18:9678609-9679128:-|nuORF	ENST00000581937.1_1_18:9678609-9679128:-|nuORF	MSMS	A375_MHC_IP_R1	1	739.84619140625	2	739.481143	1476.94773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.01	1	146.01	145.51	146.51	0								0	0	0	0.1636	1	55888	55888		0	0	1				44701	13688	32682	32947	43636	43636					0.22833673955938139
RRLRLPRWRR	10	Unmodified	_RRLRLPRWRR_					0	0	0			REV__ENST00000421814.6_1_5:162932622-162940637:+|nuORF	REV__ENST00000421814.6_1_5:162932622-162940637:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	489.37939453125	3	488.979755	1463.91744	-0.64007	-0.00031298	-0.020477	-1.0013E-05	-0.66055	-0.000323	488.97957284596794	149.02	2.2175	149.02	147.76	149.98	0					218	72	4	0	0	0	0.95063	1	56636	56636		0.13989	0.13989	1	763730	+		44702	24596	32683	32948	43637	43637					0.20403360081400024
RRLRLPRWRR	10	Unmodified	_RRLRLPRWRR_					0	0	0			REV__ENST00000421814.6_1_5:162932622-162940637:+|nuORF	REV__ENST00000421814.6_1_5:162932622-162940637:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	732.9463500976562	2	732.965994	1463.91744	-0.62536	-0.00045837	-0.036559	-2.6797E-05	-0.66192	-0.00048517	732.9658018469742	148.99	2.3964	149.01	147.62	150.01	0.018707					327	97	5	0	0	0	0.72747	8	57417	57417;57466;57649;57734;57851;58006;58044;58178		0	0	1	3329900	+		44703	24596	32683	32948	43638;43639;43640;43641;43642;43643;43644;43645	43638					0.20403360081400024
RRLRLPRWRR	10	Unmodified	_RRLRLPRWRR_					0	0	0			REV__ENST00000421814.6_1_5:162932622-162940637:+|nuORF	REV__ENST00000421814.6_1_5:162932622-162940637:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	489.3792724609375	3	488.979755	1463.91744	-0.37276	-0.00018227	-0.12971	-6.3425E-05	-0.50246	-0.0002457	488.97953326687076	148.93	2.3739	148.95	147.64	150.01	0.018707					201	95	4	0	0	0	0.95069	1	58049	58049		0	0	1	507660	+		44704	24596	32683	32948	43646	43646					0.20403360081400024
RRLRLPRWRR	10	Unmodified	_RRLRLPRWRR_					0	0	0			REV__ENST00000421814.6_1_5:162932622-162940637:+|nuORF	REV__ENST00000421814.6_1_5:162932622-162940637:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	733.3651733398438	2	732.965994	1463.91744	-0.62536	-0.00045837	-0.036559	-2.6797E-05	-0.66192	-0.00048517	732.9658018469742	148.99	2.3964	149.01	147.62	150.01	0.018707					327	97	5	0	0	0	0.95069	1	57851	57851		0	0	1	3329900	+		44705	24596	32683	32948	43647	43647					0.20403360081400024
RRLRLPRWRRW	11	Unmodified	_RRLRLPRWRRW_					0	0	0			REV__ENST00000421814.6_1_5:162932622-162940637:+|nuORF	REV__ENST00000421814.6_1_5:162932622-162940637:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2117309570312	3	551.006193	1649.99675	-0.85831	-0.00047293	-2.2989	-0.0012667	-3.1572	-0.0017397	551.0048421921517	137.58	0.40904	137.58	137.33	137.74	0					11	7	2	0	0	0	1.0015	1	52970	52970		0	0	1	1007800	+		44706	24596	32684	32949	43648	43648					0.19775007035536873
RRLRPLLRRRL	11	Unmodified	_RRLRPLLRRRL_					0	0	0		ENST00000453168.5_1_3:31574222-31574351:+|nuORF	ENST00000453168.5_1_3:31574222-31574351:+|nuORF	ENST00000453168.5_1_3:31574222-31574351:+|nuORF	MSMS	A375_MHC_IP_R2	2	753.0111083984375	2	753.010402	1504.00625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.004	1	92.743	92.243	93.243	0.73902								0	0	0	0.1636	1	34991	34991		0	0	1				44707	12094	32685	32950	43649	43649					0.274407753210653
RRLRPRRWQQR	11	Unmodified	_RRLRPRRWQQR_					0	0	0			REV__ENSG00000136378|ENST00000388820|ADAMTS7	REV__ENSG00000136378|ENST00000388820|ADAMTS7	MSMS	A375_MHC_IP_R1	1	804.857666015625	2	804.48254	1606.95053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.46	1	143.46	142.96	143.96	0								0	0	0	0.1636	1	55035	55035		0	0	1		+		44708	18932	32686	32951	43650	43650					0.17132942133457618
RRLRQWRWRPF	11	Unmodified	_RRLRQWRWRPF_					0	0	0		ENST00000341285.7_2_4:15656858-15657005:-|nuORF	ENST00000341285.7_2_4:15656858-15657005:-|nuORF	ENST00000341285.7_2_4:15656858-15657005:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	553.7212524414062	3	552.986798	1655.93856	-0.82356	-0.00045542	0.72773	0.00040243	-0.095828	-5.2992E-05	552.9879172779644	134.43	0.86105	134.43	134.12	134.98	0					39	16	4	0	0	0	0.73934	1	51860	51860		0	0	1	3256400			44709	10867	32687	32952	43651	43651					0.13683325390275058
RRLRQWRWRPF	11	Unmodified	_RRLRQWRWRPF_					0	0	0		ENST00000341285.7_2_4:15656858-15657005:-|nuORF	ENST00000341285.7_2_4:15656858-15657005:-|nuORF	ENST00000341285.7_2_4:15656858-15657005:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	552.986798	1655.93856	-0.82356	-0.00045542	0.72773	0.00040243	-0.095828	-5.2992E-05	552.9879172779644	134.43	0.86105	134.43	134.12	134.98	0	-0.078886	-0.001359	NaN	0	39	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3256400			44710	10867	32687	32952							0.13683325390275058
RRLRQWRWRPF	11	Unmodified	_RRLRQWRWRPF_					0	0	0		ENST00000341285.7_2_4:15656858-15657005:-|nuORF	ENST00000341285.7_2_4:15656858-15657005:-|nuORF	ENST00000341285.7_2_4:15656858-15657005:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	552.986798	1655.93856	-0.67179	-0.00037149	1.9757	0.0010926	1.3039	0.00072106	552.98801114606	134.45	0.96704	134.59	134.08	135.05	0.13901	0.078886	0.00071138	NaN	0	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4555700			44711	10867	32687	32952							0.13683325390275058
RRLRRFLFLRR	11	Unmodified	_RRLRRFLFLRR_					0	0	0			REV__ENST00000368655.4_1_1:153800818-153895301:-|nuORF	REV__ENST00000368655.4_1_1:153800818-153895301:-|nuORF	MSMS	A375_MHC_IP_R1	1	795.0096435546875	2	795.010402	1588.00625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.42	1	120.42	119.92	120.92	0								0	0	0	0.1636	1	44620	44620		0	0	1		+		44712	23999	32688	32953	43652	43652					0.23576775321066634
RRLRRPLHRHF	11	Unmodified	_RRLRRPLHRHF_					0	0	0			REV__ENST00000529712.5_1_11:47736424-47736610:-|nuORF	REV__ENST00000529712.5_1_11:47736424-47736610:-|nuORF	MSMS	A375_MHC_IP_R2	2	772.8684692382812	2	772.468901	1542.92325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.43	1	144.45	143.95	144.95	0.024414								0	0	0	0.1636	1	56415	56415		0	0	1		+		44713	25827	32689	32954	43653	43653					0.1735045859309139
RRLVVLATP	9	Unmodified	_RRLVVLATP_					0	0	0		ENST00000478067.1_1_3:148709334-148714532:+|nuORF;nc|ENSG00000163754|P46976-3|GYG1;nc|ENSG00000163754|P46976-2|GYG1;ENSG00000163754|ENST00000345003|GYG1	ENST00000478067.1_1_3:148709334-148714532:+|nuORF	ENST00000478067.1_1_3:148709334-148714532:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1025.061767578125	1	1024.66258	1023.6553	0.22394	0.00022946	-0.68349	-0.00070034	-0.45955	-0.00047088	1024.661696492304	149.6	1.1029	149.62	148.9	150	0.01825					88	48	2	0	0	0	0.7724	1	58061	58061		0.52476	0	1	180150			44714	6715	32690	32955	43654	43654					0.14441721222135584
RRLVVLATP	9	Unmodified	_RRLVVLATP_					0	0	0		ENST00000478067.1_1_3:148709334-148714532:+|nuORF;nc|ENSG00000163754|P46976-3|GYG1;nc|ENSG00000163754|P46976-2|GYG1;ENSG00000163754|ENST00000345003|GYG1	ENST00000478067.1_1_3:148709334-148714532:+|nuORF	ENST00000478067.1_1_3:148709334-148714532:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	1024.66258	1023.6553	-0.17814	-0.00018254	-0.52317	-0.00053607	-0.70131	-0.0007186	1024.661917665919	149.64	1.4984	149.64	148.51	150	0	0.012677	8.9694E-05	NaN	0.52476	82	52	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206600			44715	6715	32690	32955							0.14441721222135584
RRLWKWWKSFR	11	Unmodified	_RRLWKWWKSFR_					0	0	0		ENST00000461642.2_1_20:25470551-25477423:-|nuORF	ENST00000461642.2_1_20:25470551-25477423:-|nuORF	ENST00000461642.2_1_20:25470551-25477423:-|nuORF	MSMS	A375_MHC_IP_R2	2	824.96875	2	824.970411	1647.92627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.14	1	120.67	120.17	121.17	0.5321								0	0	0	0.1636	1	45806	45806		0	0	1				44716	12190	32691	32956	43655	43655					0.12822288927213776
RRMGKNPVR	9	Unmodified	_RRMGKNPVR_					0	0	0		nc|ENSG00000155755|Q96Q45-3|TMEM237	nc|ENSG00000155755|Q96Q45-3|TMEM237	nc|ENSG00000155755|Q96Q45-3|TMEM237	MSMS	A375_MHC_IP_R2	2	371.9172058105469	3	371.885581	1112.63491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.014	1	37.785	37.285	38.285	0.7709								0	0	0	0.15486	1	13523	13523		2.4985	1.5362	1				44717	14695	32692	32957	43656	43656					0.08310227290667171
RRMKRRRRWIQ	11	Unmodified	_RRMKRRRRWIQ_					0	0	0		ENST00000257749.8_2_6:90661229-90661412:-|nuORF	ENST00000257749.8_2_6:90661229-90661412:-|nuORF	ENST00000257749.8_2_6:90661229-90661412:-|nuORF	MSMS	A375_MHC_IP_R2	2	821.46142578125	2	821.494593	1640.97463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.16	1	116.81	116.31	117.31	0.65962								0	0	0	0.16334	1	43831	43831		1.3295	1.3295	1				44718	10250	32693	32958	43657	43657					0.17978459295522953
RRMRPDLSK	9	Unmodified	_RRMRPDLSK_					0	0	0		ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	ENSG00000100888|ENST00000646647|CHD8	ENSG00000100888|ENST00000646647|CHD8	MULTI-MSMS	A375_MHC_IP_R1	1	580.7321166992188	2	579.829849	1157.64514	-0.17488	-0.0001014	0.39246	0.00022756	0.21759	0.00012616	579.829544932924	57.359	0.66102	57.359	57.007	57.669	0					36	12	4	0	0	0	0.67332	1	20520	20520		9.3831	0.63772	1	5091000			44719	2228	32694	32959	43658	43658					0.07262790225240678
RRMRRRRRRPV	11	Unmodified	_RRMRRRRRRPV_					0	0	0		nc|ENSG00000182872|P0DW28|RBM10	nc|ENSG00000182872|P0DW28|RBM10	nc|ENSG00000182872|P0DW28|RBM10	MSMS	A375_MHC_IP_R1	1	797.9942626953125	2	797.997834	1593.98112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.77	1	124.77	124.27	125.27	0								0	0	0	0.16353	1	47125	47125		0.35063	0.35063	1				44720	14804	32695	32960	43659	43659					0.20788397246860768
RRNDKIIVF	9	Unmodified	_RRNDKIIVF_					0	0	0		ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF	ENSG00000163161|ENST00000285398|ERCC3	ENSG00000163161|ENST00000285398|ERCC3	MULTI-SECPEP	A375_MHC_IP_R1	1	387.9681701660156	3	387.568135	1159.68258	0.18742	7.2639E-05	-0.06559	-2.5421E-05	0.12183	4.7218E-05	387.56811010985786	40.201	0.8649	40.201	39.948	40.813	0					27	16	3	0	0	0	0.48845	1	13790	13790		37.075	15.484	1	9653600			44721	6634	32696	32961	43660	43660					0.10912204762507827
RRNDKIIVF	9	Unmodified	_RRNDKIIVF_					0	0	0		ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF	ENSG00000163161|ENST00000285398|ERCC3	ENSG00000163161|ENST00000285398|ERCC3	MULTI-MSMS	A375_MHC_IP_R2	2	387.9210205078125	3	387.568135	1159.68258	-0.3	-0.00011627	0.21144	8.1949E-05	-0.088557	-3.4322E-05	387.5681292526227	39.149	0.56143	39.924	39.658	40.219	0.77451					26	10	4	0	0	0	0.39657	1	14415	14415		24.882	12.707	1	10703000			44722	6634	32696	32961	43661	43661					0.10912204762507827
RRNNVVITV	9	Unmodified	_RRNNVVITV_					0	0	0		nc|ENSG00000156535|Q6YHK3-2|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;nc|ENSG00000156535|Q6YHK3-3|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	MULTI-MSMS	A375_MHC_IP_R1	1	357.9523620605469	3	357.552485	1069.63563	-0.042609	-1.5235E-05	-0.071932	-2.572E-05	-0.11454	-4.0955E-05	357.55244615407696	32.049	0.9653	32.049	31.769	32.734	0					41	18	3	0	0	0	0.12771	2	10304	10304;10453		45.7	24.163	1	14807000			44723	6199	32697	32962	43662;43663	43662					0.10359345211350046
RRNNVVITV	9	Unmodified	_RRNNVVITV_					0	0	0		nc|ENSG00000156535|Q6YHK3-2|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;nc|ENSG00000156535|Q6YHK3-3|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	MULTI-MSMS	A375_MHC_IP_R2	2	357.95245361328125	3	357.552485	1069.63563	-0.24146	-8.6333E-05	0.034742	1.2422E-05	-0.20671	-7.3911E-05	357.552492505388	31.253	0.71375	31.972	31.669	32.383	0.71857					34	12	4	0	0	0	0.10622	2	10994	10994;11140		49.554	24.563	1	12078000			44724	6199	32697	32962	43664;43665	43664					0.10359345211350046
RRNNVVITV	9	Unmodified	_RRNNVVITV_					0	0	0		nc|ENSG00000156535|Q6YHK3-2|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;nc|ENSG00000156535|Q6YHK3-3|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	MULTI-SECPEP	A375_MHC_IP_R2	2	536.2245483398438	2	535.825089	1069.63563	-0.87827	-0.0004706	0.35558	0.00019053	-0.52269	-0.00028007	535.8254266114628	31.204	0.56276	31.923	31.719	32.282	0.71857					22	10	3	0	0	0	0.67483	1	11041	11041		20.454	0	1	4367500			44725	6199	32697	32962	43666	43666					0.10359345211350046
RRNPDTQWI	9	Unmodified	_RRNPDTQWI_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	A375_MHC_IP_R1	1	396.27545166015625	3	395.875628	1184.60505	0.098726	3.9083E-05	0.54012	0.00021382	0.63885	0.00025291	395.87576507178727	35.393	0.76519	35.393	35.013	35.778	0					32	14	3	0	0	0	0.084766	1	11736	11736		53.404	31.867	1	10816000			44726	7898	32698	32963	43667	43667					0.02013566826326496
RRNPDTQWI	9	Unmodified	_RRNPDTQWI_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-SECPEP	A375_MHC_IP_R1	1	593.7101440429688	2	593.309803	1184.60505	-0.20976	-0.00012445	0.18575	0.00011021	-0.024006	-1.4243E-05	593.3100183524464	35.383	0.50902	35.383	35.064	35.573	0					18	9	3	0	0	0	0.50484	1	11766	11766		34.932	17.99	1	2810100			44727	7898	32698	32963	43668	43668					0.02013566826326496
RRNPDTQWI	9	Unmodified	_RRNPDTQWI_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	A375_MHC_IP_R2	2	396.2763671875	3	395.875628	1184.60505	-0.37014	-0.00014653	0.63273	0.00025048	0.26259	0.00010395	395.8758802892203	34.426	0.76219	35.178	34.904	35.666	0.75225					31	14	3	0	0	0	0.31062	1	12366	12366		29.841	10.479	1	8294900			44728	7898	32698	32963	43669	43669					0.02013566826326496
RRNPDTQWI	9	Unmodified	_RRNPDTQWI_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	A375_MHC_IP_R2	2	593.7098388671875	2	593.309803	1184.60505	-0.79494	-0.00047165	0.58931	0.00034964	-0.20564	-0.00012201	593.3101900345532	34.472	0.40825	35.224	35.006	35.414	0.75225					14	7	2	0	0	0	0.58268	1	12459	12459		21.537	9.8967	1	2958100			44729	7898	32698	32963	43670	43670					0.02013566826326496
RRNRSRRRRFR	11	Unmodified	_RRNRSRRRRFR_					0	0	0		ENST00000481383.1_1_3:180688091-180688984:+|nuORF	ENST00000481383.1_1_3:180688091-180688984:+|nuORF	ENST00000481383.1_1_3:180688091-180688984:+|nuORF	MSMS	A375_MHC_IP_R2	2	808.4892578125	2	808.488688	1614.96282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.5284	1	3.9643	3.4643	4.4643	0.43585								0	0	0	0.1636	1	1144	1144		0	0	1				44730	12513	32699	32964	43671	43671					0.179939785965189
RRNRTAFE	8	Unmodified	_RRNRTAFE_					0	0	0		ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	A375_MHC_IP_R2	2	524.677001953125	2	525.283589	1048.55262	-0.46937	-0.00024655	1.2311	0.00064667	0.76171	0.00040012	525.2840913131319	67.522	1.1691	68.258	67.546	68.715	0.73631					35	22	2	0	0	0	0.76654	1	25613	25613		15.847	0	1	17438000			44731	6638	32700	32965	43672	43672					0.030290284833881742
RRNRVPRWTRE	11	Unmodified	_RRNRVPRWTRE_					0	0	0			REV__ENST00000374206.3_1_9:116029682-116034747:-|nuORF	REV__ENST00000374206.3_1_9:116029682-116034747:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	509.66357421875	3	509.290546	1524.84981	-0.18157	-9.2472E-05	1.7182	0.00087508	1.5367	0.00078261	509.2908259537781	48.096	0.50487	48.096	47.668	48.173	0					15	9	3	0	0	0	0.73809	1	16912	16912		0.40827	0	1	3362200	+		44732	24103	32701	32966	43673	43673					0.10837865359940224
RRNSHLLRHQR	11	Unmodified	_RRNSHLLRHQR_					0	0	0		ENSG00000187626|ENST00000377294|ZKSCAN4	ENSG00000187626|ENST00000377294|ZKSCAN4	ENSG00000187626|ENST00000377294|ZKSCAN4	MSMS	A375_MHC_IP_R2	2	737.0225219726562	2	736.924523	1471.83449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.71	1	105.47	104.97	105.97	0.76308								0	0	0	0.16249	1	39613	39613		5.7319	2.1354	1				44733	8843	32702	32967	43674	43674					0.1174499856276725
RRNVAVYYV	9	Unmodified	_RRNVAVYYV_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1;ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000466012.5_1_2:219142848-219157252:-|nuORF;ENST00000495113.5_1_2:219143236-219146864:-|nuORF	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	MULTI-MSMS	A375_MHC_IP_R2	2	380.6049499511719	3	380.548852	1138.62473	-0.14208	-5.407E-05	0.1393	5.3012E-05	-0.0027804	-1.0581E-06	380.5491179744657	35.961	0.35572	36.725	36.486	36.842	0.76338					9	6	2	0	0	0	0.50892	1	13041	13041		19.362	13.17	1	797590			44734	4729	32703	32968	43675	43675					0.06095942837077928
RRPHGGAG	8	Unmodified	_RRPHGGAG_					0	0	0		ENST00000435358.5_1_1:1568591-1569292:+|nuORF;ENST00000512731.5_1_1:1567737-1568735:+|nuORF;ENST00000234610.5_1_1:1631484-1633139:+|nuORF	ENST00000435358.5_1_1:1568591-1569292:+|nuORF	ENST00000435358.5_1_1:1568591-1569292:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	807.8336181640625	1	807.433244	806.425967	-0.76113	-0.00061456	1.5549	0.0012555	0.79374	0.00064089	807.434319100748	143.47	0.19597	143.47	143.34	143.54	0					5	3	2	0	0	0	0.77861	1	55064	55064		0	0	1	1379100			44735	10156	32704	32969	43676	43676					0.015011470489071144
RRPHRRVPEA	10	Unmodified	_RRPHRRVPEA_					0	0	0		nc|ENSG00000187848|Q9UBL9-7|P2RX2	nc|ENSG00000187848|Q9UBL9-7|P2RX2	nc|ENSG00000187848|Q9UBL9-7|P2RX2	MULTI-MSMS	A375_MHC_IP_R1	1	425.649169921875	3	425.2498	1272.72757	-0.41164	-0.00017505	-0.82191	-0.00034952	-1.2336	-0.00052457	425.24942513663206	136.1	0.30579	136.1	135.95	136.25	0					12	5	3	0	0	0	0.72321	1	52448	52448		1.9064	0.83491	1	1799800			44736	14820	32705	32970	43677	43677					0.10211448348422891
RRPHRRVPEA	10	Unmodified	_RRPHRRVPEA_					0	0	0		nc|ENSG00000187848|Q9UBL9-7|P2RX2	nc|ENSG00000187848|Q9UBL9-7|P2RX2	nc|ENSG00000187848|Q9UBL9-7|P2RX2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	425.2498	1272.72757	-0.013511	-5.7457E-06	-0.35077	-0.00014916	-0.36428	-0.00015491	425.2496936062064	136.06	0.40909	136.17	135.94	136.35	0.11134	0.037814	0.00052172	NaN	1.9064	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2325700			44737	14820	32705	32970							0.10211448348422891
RRPKFSER	8	Unmodified	_RRPKFSER_					0	0	0			REV__ENST00000583128.2_1_9:18947737-18950832:-|nuORF	REV__ENST00000583128.2_1_9:18947737-18950832:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	538.7084350585938	2	538.309606	1074.60466	-0.91383	-0.00049192	-0.93245	-0.00050195	-1.8463	-0.00099387	538.3090247293388	127.76	1.119	128.02	127.61	128.73	0.26592					53	21	3	0	0	0	0.77643	1	50097	50097		7.9102	7.9102	1	12577000	+		44738	19944	32706	32971	43678	43678					0.07034191897128039
RRPLAAAA	8	Unmodified	_RRPLAAAA_					0	0	0		ENSG00000181867|ENST00000321339|FTMT;FTMT|p.S55F|1|0.54|ENSG00000181867|chr5:121852127-121852127|C/T|missense_variant	ENSG00000181867|ENST00000321339|FTMT	ENSG00000181867|ENST00000321339|FTMT	MULTI-MSMS	A375_MHC_IP_R1	1	825.904296875	1	825.505346	824.49807	-0.72669	-0.00059989	-0.068084	-5.6204E-05	-0.79477	-0.00065609	825.5051817062165	147.47	0.16438	147.47	147.4	147.56	0					25	16	2	0	0	0	0.77861	1	56350	56350		0	0	1	143230			44739	8366	32707	32972	43679	43679					0.07880061402590854
RRPLAAAA	8	Unmodified	_RRPLAAAA_					0	0	0		ENSG00000181867|ENST00000321339|FTMT;FTMT|p.S55F|1|0.54|ENSG00000181867|chr5:121852127-121852127|C/T|missense_variant	ENSG00000181867|ENST00000321339|FTMT	ENSG00000181867|ENST00000321339|FTMT	MULTI-MATCH	A375_MHC_IP_R2	2		1	825.505346	824.49807	-0.60541	-0.00049977	-0.018347	-1.5145E-05	-0.62375	-0.00051491	825.5053086152128	147.48	0.17667	147.5	147.44	147.62	0.019913	0.015589	2.3422E-05	NaN	0	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122790			44740	8366	32707	32972							0.07880061402590854
RRPLLLNSV	9	Unmodified	_RRPLLLNSV_					0	0	0		ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7687207-7690948:-|nuORF	ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	MULTI-SECPEP	A375_MHC_IP_R1	1	534.7377319335938	2	534.337833	1066.66111	-0.26415	-0.00014114	-0.17596	-9.4023E-05	-0.44011	-0.00023517	534.337746505505	49.445	0.40709	49.445	49.184	49.591	0					17	7	3	0	0	0	0.80535	1	17482	17482		0.40072	0	1	2646100			44741	1640	32708	32973	43680	43680					0.1304481973379552
RRPNNSSYQYY	11	Unmodified	_RRPNNSSYQYY_					0	0	0			REV__ENSG00000196628|ENST00000354452|TCF4	REV__ENSG00000196628|ENST00000354452|TCF4	MULTI-MSMS	A375_MHC_IP_R1	1	724.73876953125	2	724.339289	1446.66403	-0.56553	-0.00040964	-0.44309	-0.00032095	-1.0086	-0.00073059	724.3389312988371	63.979	0.35448	63.979	63.786	64.141	0					16	6	3	0	0	0	0.69231	1	23143	23143		16.149	3.9084	1	2391900	+		44742	22214	32709	32974	43681	43681					-0.04144001669988029
RRPNNSSYQYY	11	Unmodified	_RRPNNSSYQYY_					0	0	0			REV__ENSG00000196628|ENST00000354452|TCF4	REV__ENSG00000196628|ENST00000354452|TCF4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	724.339289	1446.66403	-0.56553	-0.00040964	-0.44309	-0.00032095	-1.0086	-0.00073059	724.3389312988371	63.979	0.35448	63.979	63.786	64.141	0	-0.089092	0.00025606	NaN	16.149	16	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2391900	+		44743	22214	32709	32974							-0.04144001669988029
RRPNNSSYQYY	11	Unmodified	_RRPNNSSYQYY_					0	0	0			REV__ENSG00000196628|ENST00000354452|TCF4	REV__ENSG00000196628|ENST00000354452|TCF4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	724.339289	1446.66403	-0.7328	-0.0005308	-1.0409	-0.000754	-1.7737	-0.0012848	724.3386097146218	63.417	0.40776	64.158	63.936	64.344	0.74022	0.089092	-0.00061004	NaN	16.149	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2583900	+		44744	22214	32709	32974							-0.04144001669988029
RRPPRAQAGL	10	Unmodified	_RRPPRAQAGL_					0	0	0			REV__ENSG00000253352|ENST00000644773|TUG1	REV__ENSG00000253352|ENST00000644773|TUG1	MULTI-MSMS	A375_MHC_IP_R1	1	374.9326171875	3	374.559863	1120.65776	0.20818	7.7975E-05	1.0288	0.00038536	1.237	0.00046334	374.5605912340861	25.618	0.5594	25.618	25.357	25.917	0					22	10	3	0	0	0	0.70741	1	7566	7566		8.9762	1.3673	1	11725000	+		44745	22850	32710	32975	43682	43682					0.10225569679778346
RRPPRRRI	8	Unmodified	_RRPPRRRI_					0	0	0			REV__ENSG00000270806|ENST00000605587|C17orf50	REV__ENSG00000270806|ENST00000605587|C17orf50	MULTI-MSMS	A375_MHC_IP_R2	2	369.6412353515625	3	369.575847	1105.70571	-0.37247	-0.00013765	-0.1442	-5.3292E-05	-0.51666	-0.00019095	369.575848464887	37.003	0.40437	37.774	37.513	37.917	0.7709					13	7	2	0	0	0	0.7777	1	13511	13511		3.2813	0	1	2973100	+		44746	22943	32711	32976	43683	43683					0.1570868839050945
RRPPSLVHKP	10	Unmodified	_RRPPSLVHKP_					0	0	0		nc|ENSG00000204131|Q5HYW2-2|NHSL2;ENSG00000204131|ENST00000633930|NHSL2	nc|ENSG00000204131|Q5HYW2-2|NHSL2	nc|ENSG00000204131|Q5HYW2-2|NHSL2	MULTI-SECPEP	A375_MHC_IP_R2	2	594.2608032226562	2	593.862006	1185.70946	-0.37503	-0.00022271	-1.0724	-0.00063687	-1.4475	-0.00085959	593.8613666992259	145.23	0.38161	145.25	145.09	145.47	0.021408					28	25	2	0	0	0	0.94927	1	56690	56690		1.3295	0.80477	1	259630			44747	9408	32712	32977	43684	43684					0.12403313373692981
RRPRKGHK	8	Unmodified	_RRPRKGHK_					0	0	0		nc|ENSG00000188004|P0DPA3|SNHG28	nc|ENSG00000188004|P0DPA3|SNHG28	nc|ENSG00000188004|P0DPA3|SNHG28	MULTI-MSMS	A375_MHC_IP_R1	1	518.22509765625	2	517.825758	1033.63696	-0.88308	-0.00045728	0.70292	0.00036399	-0.18016	-9.3294E-05	517.8257477587576	147.45	0.28545	147.45	147.36	147.64	0					40	28	2	0	0	0	0.77861	1	56346	56346		0	0	1	174240			44748	14821	32713	32978	43685	43685					0.12149024090786043
RRPRKGHK	8	Unmodified	_RRPRKGHK_					0	0	0		nc|ENSG00000188004|P0DPA3|SNHG28	nc|ENSG00000188004|P0DPA3|SNHG28	nc|ENSG00000188004|P0DPA3|SNHG28	MULTI-MATCH	A375_MHC_IP_R2	2		2	517.825758	1033.63696	-0.53705	-0.0002781	0.60161	0.00031153	0.064564	3.3433E-05	517.8256285065664	147.49	0.27267	147.51	147.41	147.69	0.019897	0.031967	-5.6728E-05	NaN	0	42	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135630			44749	14821	32713	32978							0.12149024090786043
RRPRRPRRWWR	11	Unmodified	_RRPRRPRRWWR_					0	0	0		ENST00000372022.5_1_9:136199397-136199478:-|nuORF	ENST00000372022.5_1_9:136199397-136199478:-|nuORF	ENST00000372022.5_1_9:136199397-136199478:-|nuORF	MSMS	A375_MHC_IP_R2	2	839.788330078125	2	839.498524	1676.9825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.058	1	76.798	76.298	77.298	0.74052								0	0	0	0.1636	1	28874	28874		0	0	1				44750	11188	32714	32979	43686	43686					0.17108354607285037
RRPRRRPRRKL	11	Unmodified	_RRPRRRPRRKL_					0	0	0			REV__ENST00000251102.12_1_16:57965650-57974178:-|nuORF	REV__ENST00000251102.12_1_16:57965650-57974178:-|nuORF	MSMS	A375_MHC_IP_R1	1	774.3822631835938	2	774.008725	1546.0029	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81	1	81	80.5	81.5	0								0	0	0	0.1636	1	29596	29596		0	0	1		+		44751	23123	32715	32980	43687	43687					0.25173525267086916
RRPRRRPRSWF	11	Unmodified	_RRPRRRPRSWF_					0	0	0			REV__ENST00000503687.2_2_7:66094097-66236887:+|nuORF	REV__ENST00000503687.2_2_7:66094097-66236887:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	524.3748168945312	3	523.974781	1568.90251	-0.92531	-0.00048484	-0.43494	-0.0002279	-1.3603	-0.00071274	523.97511495217	56.495	0.91804	57.245	57	57.918	0.75015					28	17	2	0	0	0	0.73891	1	21384	21384		0.40827	0.31342	1	4948500	+		44752	25520	32716	32981	43688	43688					0.14081868213429516
RRPRRWLKRRL	11	Unmodified	_RRPRRWLKRRL_					0	0	0		ENST00000251102.12_1_16:57965650-57974178:-|nuORF	ENST00000251102.12_1_16:57965650-57974178:-|nuORF	ENST00000251102.12_1_16:57965650-57974178:-|nuORF	MSMS	A375_MHC_IP_R1	1	796.7989501953125	2	797.013476	1592.0124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.22	1	133.22	132.72	133.72	0								0	0	0	0.1636	1	51375	51375		0	0	1				44753	10201	32717	32982	43689	43689					0.24007293552608644
RRPRRWWRQPQ	11	Unmodified	_RRPRRWWRQPQ_					0	0	0		ENST00000372022.5_1_9:136199397-136199478:-|nuORF	ENST00000372022.5_1_9:136199397-136199478:-|nuORF	ENST00000372022.5_1_9:136199397-136199478:-|nuORF	MSMS	A375_MHC_IP_R2	2	811.8528442382812	2	811.455991	1620.89743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.932	1	98.69	98.19	99.19	0.75789								0	0	0	0.16354	1	37163	37163		0.30703	0.30703	1				44754	11188	32718	32983	43690	43690					0.11181564350840745
RRPWLGEPL	9	Unmodified	_RRPWLGEPL_					0	0	0		ENST00000523027.1_1_8:26441442-26441496:+|nuORF	ENST00000523027.1_1_8:26441442-26441496:+|nuORF	ENST00000523027.1_1_8:26441442-26441496:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	374.5906066894531	3	375.217214	1122.62981	0.36457	0.00013679	-0.033696	-1.2643E-05	0.33088	0.00012415	375.5515273921697	28.493	0.50637	28.493	28.188	28.694	0					16	9	2	0	0	0	0.775	1	8728	8728		7.1017	4.0295	1	1552900			44755	13033	32719	32984	43691	43691					0.07340246699709496
RRPWWPRRARR	11	Unmodified	_RRPWWPRRARR_					0	0	0			REV__ENST00000409939.7_1_16:30381377-30381548:-|nuORF	REV__ENST00000409939.7_1_16:30381377-30381548:-|nuORF	MSMS	A375_MHC_IP_R1	1	796.9671020507812	2	796.966526	1591.9185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.11	1	119.11	118.61	119.61	0								0	0	0	0.1636	1	43965	43965		0	0	1		+		44756	24477	32720	32985	43692	43692					0.1462157445032517
RRQGGGPGAGG	11	Unmodified	_RRQGGGPGAGG_					0	0	0			REV__ENST00000470088.5_1_11:64559674-64564762:-|nuORF	REV__ENST00000470088.5_1_11:64559674-64564762:-|nuORF	MSMS	A375_MHC_IP_R1	1	485.22161865234375	2	485.252289	968.490024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.51	1	147.51	147.01	148.01	0								0	0	0	0.1636	1	56366	56366		0	0	1		+		44757	25100	32721	32986	43693	43693					0.0045188241521145756
RRQRHRRRYQF	11	Unmodified	_RRQRHRRRYQF_					0	0	0			REV__ENSG00000001629|ENST00000265742|ANKIB1	REV__ENSG00000001629|ENST00000265742|ANKIB1	MSMS	A375_MHC_IP_R1	1	553.6974487304688	3	553.648957	1657.92504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.368	1	45.368	44.868	45.868	0								0	0	0	0.16351	1	15872	15872		0.45452	0.37117	1		+		44758	16085	32722	32987	43694	43694					0.12239467611061627
RRQRHRRRYQF	11	Unmodified	_RRQRHRRRYQF_					0	0	0			REV__ENSG00000001629|ENST00000265742|ANKIB1	REV__ENSG00000001629|ENST00000265742|ANKIB1	MSMS	A375_MHC_IP_R1	1	553.696533203125	3	553.648957	1657.92504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.11	1	134.11	133.61	134.61	0								0	0	0	0.16352	1	51719	51719		0.40827	0.31342	1		+		44759	16085	32722	32987	43695	43695					0.12239467611061627
RRQRWRRRRHL	11	Unmodified	_RRQRWRRRRHL_					0	0	0		ENST00000372724.5_1_10:76586363-76598485:+|nuORF	ENST00000372724.5_1_10:76586363-76598485:+|nuORF	ENST00000372724.5_1_10:76586363-76598485:+|nuORF	MSMS	A375_MHC_IP_R1	1	838.9054565429688	2	838.506881	1674.99921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.412	1	92.412	91.912	92.912	0								0	0	0	0.16354	1	33962	33962		0.30703	0.30703	1				44760	11212	32723	32988	43696	43696					0.18870855493241834
RRQVQHRYWRQ	11	Unmodified	_RRQVQHRYWRQ_					0	0	0			REV__nc|ENSG00000141577|Q9UPN4-3|CEP131	REV__nc|ENSG00000141577|Q9UPN4-3|CEP131	MULTI-MSMS	A375_MHC_IP_R2	2	807.840087890625	2	806.937631	1611.86071	-0.9735	-0.00078556	1.0913	0.00088058	0.11776	9.5026E-05	806.9384123366664	81.44	0.45293	82.183	81.928	82.381	0.74293					11	8	2	0	0	0	0.73902	1	30954	30954		0.30703	0.30703	1	2436400	+		44761	19281	32724	32989	43697	43697					0.07925267734253794
RRQVQHRYWRQ	11	Unmodified	_RRQVQHRYWRQ_					0	0	0			REV__nc|ENSG00000141577|Q9UPN4-3|CEP131	REV__nc|ENSG00000141577|Q9UPN4-3|CEP131	MULTI-MATCH	A375_MHC_IP_R1	1		2	806.937631	1611.86071	-0.24298	-0.00019607	1.5586	0.0012577	1.3156	0.0010616	807.4407248268998	82.256	0.35641	82.256	82.011	82.368	0	0.036301	0.0006764	NaN	0.30703	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3276900	+		44762	19281	32724	32989							0.07925267734253794
RRQVQHRYWRQ	11	Unmodified	_RRQVQHRYWRQ_					0	0	0			REV__nc|ENSG00000141577|Q9UPN4-3|CEP131	REV__nc|ENSG00000141577|Q9UPN4-3|CEP131	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	806.937631	1611.86071	-0.9735	-0.00078556	1.0913	0.00088058	0.11776	9.5026E-05	806.9384123366664	81.44	0.45293	82.183	81.928	82.381	0.74293	-0.036301	-7.7753E-05	NaN	0.30703	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2436400	+		44763	19281	32724	32989							0.07925267734253794
RRQYTKREKGK	11	Unmodified	_RRQYTKREKGK_					0	0	0			REV__ENSG00000102974|ENST00000264010|CTCF	REV__ENSG00000102974|ENST00000264010|CTCF	MULTI-MSMS	A375_MHC_IP_R1	1	484.3509216308594	3	483.951419	1448.83243	-0.6222	-0.00030112	-0.4688	-0.00022688	-1.091	-0.00052799	483.9511679505548	138	0.76759	138	137.84	138.61	0					22	14	3	0	0	0	0.73828	1	53111	53111		1.0136	0.60531	1	2116100	+		44764	17242	32725	32990	43698	43698					0.12596525034291517
RRQYTKREKGK	11	Unmodified	_RRQYTKREKGK_					0	0	0			REV__ENSG00000102974|ENST00000264010|CTCF	REV__ENSG00000102974|ENST00000264010|CTCF	MULTI-MSMS	A375_MHC_IP_R2	2	484.3504638671875	3	483.951419	1448.83243	-0.39959	-0.00019338	-0.58711	-0.00028413	-0.98671	-0.00047752	483.950968353922	137.98	0.60893	138.07	137.91	138.52	0.083969					20	11	3	0	0	0	0.73828	1	54142	54142		1.0136	0.50762	1	1764700	+		44765	17242	32725	32990	43699	43699					0.12596525034291517
RRRAFALVS	9	Unmodified	_RRRAFALVS_					0	0	0		ENSG00000198612|ENST00000354371|COPS8;nc|ENSG00000198612|Q99627-2|COPS8	ENSG00000198612|ENST00000354371|COPS8	ENSG00000198612|ENST00000354371|COPS8	MULTI-MSMS	A375_MHC_IP_R2	2	359.62054443359375	3	359.220958	1074.64105	-0.12455	-4.474E-05	-0.7969	-0.00028626	-0.92144	-0.000331	359.2206444700437	133.46	0.65927	133.63	133.45	134.11	0.16487					19	12	3	0	0	0	0.75523	1	52530	52530		1.0715	0	1	3230800			44766	9291	32726	32991	43700	43700					0.1067106879381754
RRRCKRLLRKP	11	Unmodified	_RRRCKRLLRKP_					0	0	0			REV__ENST00000609879.1_1_1:149399040-149399154:-|nuORF	REV__ENST00000609879.1_1_1:149399040-149399154:-|nuORF	MSMS	A375_MHC_IP_R1	1	741.5946044921875	2	741.475338	1480.93612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.07	1	147.07	146.57	147.57	0								0	0	0	0.1636	1	56233	56233		0	0	1		+		44767	26572	32727	32992	43701	43701					0.2148915366096844
RRRCKRLLRKP	11	Unmodified	_RRRCKRLLRKP_					0	0	0			REV__ENST00000609879.1_1_1:149399040-149399154:-|nuORF	REV__ENST00000609879.1_1_1:149399040-149399154:-|nuORF	MSMS	A375_MHC_IP_R2	2	741.5945434570312	2	741.475338	1480.93612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.18	1	147.2	146.7	147.7	0.019913								0	0	0	0.1636	1	57262	57262		0	0	1		+		44768	26572	32727	32992	43702	43702					0.2148915366096844
RRRCRQHSRRP	11	Unmodified	_RRRCRQHSRRP_					0	0	0		ENST00000558100.1_1_15:52311447-52334953:+|nuORF;ENST00000261845.6_1_15:52311447-52338038:+|nuORF	ENST00000558100.1_1_15:52311447-52334953:+|nuORF	ENST00000558100.1_1_15:52311447-52334953:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.6840515136719	3	503.283509	1506.8287	-0.39223	-0.0001974	0.38634	0.00019444	-0.0058866	-2.9626E-06	503.28414069054736	57.768	0.81206	57.768	57.618	58.43	0					19	15	2	0	0	0	0.99916	1	20947	20947		4.4062	3.2964	1	1622000			44769	10290	32728	32993	43703	43703					0.09555576779462172
RRRDAVIAL	9	Unmodified	_RRRDAVIAL_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	A375_MHC_IP_R2	2	357.62420654296875	3	357.22448	1068.65161	-0.93811	-0.00033511	0.63322	0.0002262	-0.30488	-0.00010891	357.22463205423236	29.477	0.50466	30.176	29.88	30.385	0.69872					13	9	2	0	0	0	0.50355	1	10321	10321		19.626	6.0111	1	2590000			44770	9791	32729	32994	43704	43704					0.12003051448255064
RRRDAVIAL	9	Unmodified	_RRRDAVIAL_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MATCH	A375_MHC_IP_R1	1		3	357.22448	1068.65161	-0.28972	-0.0001035	0.046217	1.651E-05	-0.24351	-8.6986E-05	357.2244436215283	30.445	0.4529	30.445	30.301	30.754	0	0.13469	-0.00034746	NaN	19.626	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1693500			44771	9791	32729	32994							0.12003051448255064
RRREIHEHKLR	11	Unmodified	_RRREIHEHKLR_					0	0	0			REV__ENSG00000160007|ENST00000672722|ARHGAP35	REV__ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-MSMS	A375_MHC_IP_R2	2	765.8477172851562	2	765.447831	1528.88111	-0.8365	-0.0006403	0.4266	0.00032654	-0.40991	-0.00031376	765.4479904744455	133.65	1.1659	133.81	132.99	134.16	0.16487					86	22	5	0	0	0	0.73924	1	52543	52543		0	0	1	74858000	+		44772	20141	32730	32995	43705	43705					0.13782438394059682
RRREKPRRRER	11	Unmodified	_RRREKPRRRER_					0	0	0			REV__nc|ENSG00000077157|O60237-3|PPP1R12B	REV__nc|ENSG00000077157|O60237-3|PPP1R12B	MULTI-MSMS	A375_MHC_IP_R1	1	798.0512084960938	2	797.982904	1593.95125	-0.023542	-1.8786E-05	-0.97659	-0.0007793	-1.0001	-0.00079809	797.9808342986764	127.34	0.35539	127.34	127.06	127.42	0					8	6	2	0	0	0	0.73934	1	48803	48803		0	0	1	10357000	+		44773	27117	32731	32996	43706	43706					0.17803736782525448
RRREKRLSRS	10	Unmodified	_RRREKRLSRS_					0	0	0		ENST00000264434.6_1_2:70409910-70418148:-|nuORF	ENST00000264434.6_1_2:70409910-70418148:-|nuORF	ENST00000264434.6_1_2:70409910-70418148:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	672.8073120117188	2	672.408175	1342.8018	-0.85269	-0.00057335	0.62248	0.00041856	-0.2302	-0.00015479	672.408454359913	130.76	1.0688	130.76	130.11	131.18	0					43	20	3	0	0	0	0.94897	1	50104	50104		1.4819	0	1	52204000			44774	10335	32732	32997	43707	43707					0.14410791439922832
RRREKRLSRS	10	Unmodified	_RRREKRLSRS_					0	0	0		ENST00000264434.6_1_2:70409910-70418148:-|nuORF	ENST00000264434.6_1_2:70409910-70418148:-|nuORF	ENST00000264434.6_1_2:70409910-70418148:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	672.808349609375	2	672.408175	1342.8018	-0.74259	-0.00049932	0.86325	0.00058046	0.12067	8.1139E-05	672.408551882627	130.62	1.2175	130.83	130.1	131.31	0.2142					64	23	3	0	0	0	0.72416	1	51111	51111		1.4819	0	1	48598000			44775	10335	32732	32997	43708	43708					0.14410791439922832
RRRESIYDYLE	11	Unmodified	_RRRESIYDYLE_					0	0	0			REV__nc|ENSG00000074590|O60285-2|NUAK1	REV__nc|ENSG00000074590|O60285-2|NUAK1	MSMS	A375_MHC_IP_R2	2	750.3837280273438	2	750.383697	1498.75284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.48	1	128.72	128.22	129.22	0.23946								0	0	0	0.16312	1	50457	50457		2.4985	1.169	1		+		44776	16636	32733	32998	43709	43709					0.023414135696611993
RRRETERIERE	11	Unmodified	_RRRETERIERE_					0	0	0			REV__SAFB2|p.Y825Lfs*9|1|0.3|ENSG00000130254|chr19:5590331-5590332|-/C|frameshift_variant	REV__SAFB2|p.Y825Lfs*9|1|0.3|ENSG00000130254|chr19:5590331-5590332|-/C|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	765.8464965820312	2	765.416394	1528.81823	-0.75287	-0.00057626	0.82083	0.00062828	0.067966	5.2023E-05	765.416773718012	133.99	0.5081	133.99	133.76	134.27	0					13	9	2	0	0	0	1.001	1	51753	51753		1.1933	0.79263	1	2422100	+		44777	18528	32734	32999	43710	43710					0.07497827815382152
RRRFADTKRYE	11	Unmodified	_RRRFADTKRYE_					0	0	0			REV__nc|ENSG00000135636|O75923-3|DYSF	REV__nc|ENSG00000135636|O75923-3|DYSF	MSMS	A375_MHC_IP_R1	1	749.77734375	2	749.405298	1496.79604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.86	1	140.86	140.36	141.36	0								0	0	0	0.16354	1	54086	54086		0.30703	0	1		+		44778	18871	32735	33000	43711	43711					0.06751648137583288
RRRFAPPNPHL	11	Unmodified	_RRRFAPPNPHL_					0	0	0			REV__ENST00000440190.1_1_1:39988131-40011451:-|nuORF	REV__ENST00000440190.1_1_1:39988131-40011451:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	454.66119384765625	3	454.261817	1359.76362	-0.55156	-0.00025055	-1.1196	-0.0005086	-1.6712	-0.00075915	454.2611469197335	20.373	0.81237	20.983	20.6	21.413	0.61029					25	15	3	0	0	0	0.73636	1	6406	6406		2.8433	0.59056	1	1624800	+		44779	24663	32736	33001	43712	43712					0.09812905525245696
RRRGRRRW	8	Unmodified	_RRRGRRRW_					0	0	0			REV__ENST00000598755.1_1_19:52104480-52104837:+|nuORF	REV__ENST00000598755.1_1_19:52104480-52104837:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	399.6239013671875	3	400.246612	1197.71801	-0.46487	-0.00018606	1.9443	0.0007782	1.4794	0.00059214	400.58194309668	25	0.46052	25.644	25.516	25.976	0.64368					10	8	2	0	0	0	0.972	1	8268	8268		3.9444	0	1	4578900	+		44780	26489	32737	33002	43713	43713					0.12705724853549327
RRRGRWQRR	9	Unmodified	_RRRGRWQRR_					0	0	0			REV__ENST00000491143.2_1_18:55102944-55103118:+|nuORF	REV__ENST00000491143.2_1_18:55102944-55103118:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	663.4630126953125	2	663.895569	1325.77659	-0.85927	-0.00057047	0.75804	0.00050326	-0.10123	-6.7209E-05	663.8956251943422	137.67	1.385	137.67	137.13	138.51	0					31	26	2	0	0	0	0.81724	1	53153	53153		1.8442	1.4936	1	1018100	+		44781	25398	32738	33003	43714	43714					0.12672781428000235
RRRHAFRRQA	10	Unmodified	_RRRHAFRRQA_					0	0	0		nc|ENSG00000022567|Q5BKX6-3|SLC45A4;SLC45A4|p.V701Wfs*8|1|0.47|ENSG00000022567|chr8:141212398-141212398|A/-|frameshift_variant;nc|ENSG00000022567|Q5BKX6-2|SLC45A4;nc|ENSG00000022567|Q5BKX6|SLC45A4;ENSG00000022567|ENST00000517878|SLC45A4	nc|ENSG00000022567|Q5BKX6-3|SLC45A4	nc|ENSG00000022567|Q5BKX6-3|SLC45A4	MULTI-MSMS	A375_MHC_IP_R1	1	677.7936401367188	2	677.395402	1352.77625	-0.87952	-0.00059578	0.40323	0.00027315	-0.47629	-0.00032264	677.3955243544059	132.36	6.0136	132.36	131.88	137.9	0					366	117	7	0	0	0	0.72591	1	52595	52595		1.6526	1.6526	1	943820000			44782	14457	32739	33004	43715	43715					0.11397361708168319
RRRHAFRRQA	10	Unmodified	_RRRHAFRRQA_					0	0	0		nc|ENSG00000022567|Q5BKX6-3|SLC45A4;SLC45A4|p.V701Wfs*8|1|0.47|ENSG00000022567|chr8:141212398-141212398|A/-|frameshift_variant;nc|ENSG00000022567|Q5BKX6-2|SLC45A4;nc|ENSG00000022567|Q5BKX6|SLC45A4;ENSG00000022567|ENST00000517878|SLC45A4	nc|ENSG00000022567|Q5BKX6-3|SLC45A4	nc|ENSG00000022567|Q5BKX6-3|SLC45A4	MULTI-MSMS	A375_MHC_IP_R2	2	677.793701171875	2	677.395402	1352.77625	-0.6191	-0.00041937	0.07631	5.1692E-05	-0.54279	-0.00036768	677.3952939936659	132.24	6.0157	132.43	131.95	137.97	0.18953					345	117	6	0	0	0	0.72607	1	53843	53843		1.4819	0.15237	1	826630000			44783	14457	32739	33004	43716	43716					0.11397361708168319
RRRHQRKYRRY	11	Unmodified	_RRRHQRKYRRY_					0	0	0		nc|ENSG00000117616|Q9BUV0-3|RSRP1;nc|ENSG00000117616|Q9BUV0-2|RSRP1;ENSG00000117616|ENST00000243189|RSRP1	nc|ENSG00000117616|Q9BUV0-3|RSRP1	nc|ENSG00000117616|Q9BUV0-3|RSRP1	MSMS	A375_MHC_IP_R2	2	837.8883666992188	2	837.985447	1673.95634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.26	1	121.71	121.21	122.21	0.44488								0	0	0	0.1636	1	46357	46357		0	0	1				44784	3501	32740	33005	43717	43717					0.14632040645165034
RRRHVWHHRVF	11	Unmodified	_RRRHVWHHRVF_					0	0	0			REV__ENSG00000157680|ENST00000614521|DGKI;REV__nc|ENSG00000157680|O75912|DGKI;REV__ENSG00000149091|ENST00000456247|DGKZ	REV__ENSG00000157680|ENST00000614521|DGKI	MSMS	A375_MHC_IP_R2	2	793.5364990234375	2	793.445426	1584.8763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.91	1	119.52	119.02	120.02	0.60909								0	0	0	0.16334	1	45218	45218		1.3295	1.0225	1		+		44785	20039;27309;19660	32741	33006	43718	43718					0.10725599041961686
RRRKAPACRRR	11	Unmodified	_RRRKAPACRRR_					0	0	0		ENST00000585362.6_3_19:1104424-1105401:+|nuORF	ENST00000585362.6_3_19:1104424-1105401:+|nuORF	ENST00000585362.6_3_19:1104424-1105401:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	713.8300170898438	2	713.431461	1424.84837	-0.56145	-0.00040056	-0.66975	-0.00047782	-1.2312	-0.00087838	713.430306271012	149.06	2.1874	149.08	147.82	150.01	0.018692					263	80	5	0	0	0	0.73809	1	57783	57783		1.1933	0.84271	1	1440800			44786	13715	32742	33007	43719	43719					0.15293952790193543
RRRKKKVKKLK	11	Unmodified	_RRRKKKVKKLK_					0	0	0			REV__ENSG00000128908|ENST00000648947|INO80	REV__ENSG00000128908|ENST00000648947|INO80	MSMS	A375_MHC_IP_R2	2	734.9251098632812	2	734.525353	1467.03615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.66	1	145.68	145.18	146.18	0.021408								0	0	0	0.1636	1	56826	56826		0	0	1		+		44787	18474	32743	33008	43720	43720					0.32131714266415656
RRRKLLRALLH	11	Unmodified	_RRRKLLRALLH_					0	0	0			REV__nc|ENSG00000184224|Q8NBR9|NDUFV1-DT	REV__nc|ENSG00000184224|Q8NBR9|NDUFV1-DT	MSMS	A375_MHC_IP_R2	2	716.7020874023438	2	716.478403	1430.94225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.37	1	144.4	143.9	144.9	0.024414								0	0	0	0.1636	1	56396	56396		0	0	1		+		44788	27407	32744	33009	43721	43721					0.24401995164157597
RRRKLTKRLKA	11	Unmodified	_RRRKLTKRLKA_					0	0	0			REV__ENST00000608163.1_1_10:46215370-46222350:-|nuORF	REV__ENST00000608163.1_1_10:46215370-46222350:-|nuORF	MSMS	A375_MHC_IP_R1	1	713.8440551757812	2	713.483686	1424.95282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.77	1	144.77	144.27	145.27	0								0	0	0	0.1636	1	55510	55510		0	0	1		+		44789	26557	32745	33010	43722	43722					0.2573397781859512
RRRKLTKRLKA	11	Unmodified	_RRRKLTKRLKA_					0	0	0			REV__ENST00000608163.1_1_10:46215370-46222350:-|nuORF	REV__ENST00000608163.1_1_10:46215370-46222350:-|nuORF	MSMS	A375_MHC_IP_R2	2	713.8440551757812	2	713.483686	1424.95282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.79	1	144.81	144.31	145.31	0.021408								0	0	0	0.1636	1	56545	56545		0	0	1		+		44790	26557	32745	33010	43723	43723					0.2573397781859512
RRRKLTKRLKA	11	Unmodified	_RRRKLTKRLKA_					0	0	0			REV__ENST00000608163.1_1_10:46215370-46222350:-|nuORF	REV__ENST00000608163.1_1_10:46215370-46222350:-|nuORF	MSMS	A375_MHC_IP_R2	2	713.8848266601562	2	713.483686	1424.95282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.91	1	144.93	144.43	145.43	0.021408								0	0	0	0.1636	1	56591	56591		0	0	1		+		44791	26557	32745	33010	43724	43724					0.2573397781859512
RRRKNIWYLLP	11	Unmodified	_RRRKNIWYLLP_					0	0	0			REV__ENSG00000186118|ENST00000334122|TEX38	REV__ENSG00000186118|ENST00000334122|TEX38	MULTI-MSMS	A375_MHC_IP_R2	2	758.857666015625	2	757.956969	1513.89939	-0.70418	-0.00053374	0.5054	0.00038307	-0.19878	-0.00015067	758.4582931092398	142.46	0.86401	142.49	142.03	142.89	0.030731					27	16	3	0	0	0	0.73934	1	55729	55729		0	0	1	3070200	+		44792	21948	32746	33011	43725	43725					0.1629918031608213
RRRKQQILCRQ	11	Unmodified	_RRRKQQILCRQ_					0	0	0			REV__ENSG00000155269|ENST00000382487|GPR78	REV__ENSG00000155269|ENST00000382487|GPR78	MULTI-MSMS	A375_MHC_IP_R2	2	371.9762878417969	4	371.973031	1483.86302	-0.18971	-7.0568E-05	-0.17848	-6.639E-05	-0.36819	-0.00013696	371.97304713226936	28.772	0.30005	29.471	29.234	29.534	0.69872					11	5	3	0	0	0	0.73658	1	9978	9978		2.6312	0	1	11997000	+		44793	19918	32747	33012	43726	43726					0.14043980147721413
RRRKQWKNKKR	11	Unmodified	_RRRKQWKNKKR_					0	0	0		nc|ENSG00000030304|O15146-3|MUSK;nc|ENSG00000030304|O15146-2|MUSK;ENSG00000030304|ENST00000374448|MUSK	nc|ENSG00000030304|O15146-3|MUSK	nc|ENSG00000030304|O15146-3|MUSK	MSMS	A375_MHC_IP_R1	1	792.513671875	2	792.495116	1582.97568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.04	1	118.04	117.54	118.54	0								0	0	0	0.16354	1	43403	43403		0.30703	0.03801	1				44794	14459	32748	33013	43727	43727					0.2075099693604443
RRRKRGRFHPE	11	Unmodified	_RRRKRGRFHPE_					0	0	0		ZNF804A|p.G822E|1|0.38|ENSG00000170396|chr2:184937861-184937861|G/A|missense_variant	ZNF804A|p.G822E|1|0.38|ENSG00000170396|chr2:184937861-184937861|G/A|missense_variant	ZNF804A|p.G822E|1|0.38|ENSG00000170396|chr2:184937861-184937861|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	747.983642578125	2	747.934891	1493.85523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.008	1	81.008	80.508	81.508	0								0	0	0	0.16307	1	29599	29599		2.7352	1.2533	1				44795	30246	32749	33014	43728	43728					0.1280558894245587
RRRKRRRLRIQ	11	Unmodified	_RRRKRRRLRIQ_					0	0	0			REV__ENST00000260731.4_1_10:94353109-94353202:+|nuORF	REV__ENST00000260731.4_1_10:94353109-94353202:+|nuORF	MSMS	A375_MHC_IP_R2	2	797.3836669921875	2	797.527282	1593.04001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.93	1	125.26	124.76	125.76	0.32969								0	0	0	0.1636	1	48496	48496		0	0	1		+		44796	23178	32750	33015	43729	43729					0.2672119681287768
RRRKRTHRAHR	11	Unmodified	_RRRKRTHRAHR_					0	0	0			REV__ENSG00000165684|ENST00000684778|SNAPC4	REV__ENSG00000165684|ENST00000684778|SNAPC4	MSMS	A375_MHC_IP_R1	1	765.46533203125	2	765.464681	1528.91481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.83	1	98.83	98.33	99.33	0								0	0	0	0.1636	1	36309	36309		0	0	1		+		44797	20611	32751	33016	43730	43730					0.1715090467648679
RRRKRWQVNWR	11	Unmodified	_RRRKRWQVNWR_					0	0	0		ENST00000546876.1_1_12:114395740-114397707:-|nuORF	ENST00000546876.1_1_12:114395740-114397707:-|nuORF	ENST00000546876.1_1_12:114395740-114397707:-|nuORF	MSMS	A375_MHC_IP_R2	2	820.9862060546875	2	820.97709	1639.93963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.268	1	84.008	83.508	84.508	0.73962								0	0	0	0.16354	1	31649	31649		0.30703	0.30703	1				44798	13335	32752	33017	43731	43731					0.14525539759188177
RRRKTILKQHL	11	Unmodified	_RRRKTILKQHL_					0	0	0			REV__nc|ENSG00000173040|Q86UK5-2|EVC2	REV__nc|ENSG00000173040|Q86UK5-2|EVC2	MSMS	A375_MHC_IP_R2	2	724.8370361328125	2	724.967868	1447.92118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.73	1	143.75	143.25	144.25	0.024414								0	0	0	0.1636	1	56162	56162		0	0	1		+		44799	21190	32753	33018	43732	43732					0.21513985064643748
RRRKTILKQHL	11	Unmodified	_RRRKTILKQHL_					0	0	0			REV__nc|ENSG00000173040|Q86UK5-2|EVC2	REV__nc|ENSG00000173040|Q86UK5-2|EVC2	MSMS	A375_MHC_IP_R2	2	724.7379150390625	2	724.967868	1447.92118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.34	1	144.36	143.86	144.86	0.024414								0	0	0	0.1636	1	56383	56383		0	0	1		+		44800	21190	32753	33018	43733	43733					0.21513985064643748
RRRLFQRPRH	10	Unmodified	_RRRLFQRPRH_					0	0	0			REV__LCE5A|p.S77F|1|0.31|ENSG00000186207|chr1:152511764-152511764|C/T|missense_variant	REV__LCE5A|p.S77F|1|0.31|ENSG00000186207|chr1:152511764-152511764|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	711.815185546875	2	711.426702	1420.83885	-0.5538	-0.00039399	0.15773	0.00011221	-0.39607	-0.00028178	711.9274541659248	145.05	0.27301	145.08	145.01	145.28	0.021408					13	11	2	0	0	0	0.72747	1	56649	56649		0	0	1	481320	+		44801	26923	32754	33019	43734	43734					0.14526507776349717
RRRLLLLLPRI	11	Unmodified	_RRRLLLLLPRI_					0	0	0			REV__ENST00000560665.1_1_15:65804856-65809996:-|nuORF	REV__ENST00000560665.1_1_15:65804856-65809996:-|nuORF	MSMS	A375_MHC_IP_R2	2	710.0133666992188	2	709.993355	1417.97216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.734	1	40.509	40.009	41.009	0.77451								0	0	0	0.1636	1	14686	14686		0	0	1		+		44802	26169	32755	33020	43735	43735					0.27988934109521324
RRRLLLLLPRI	11	Unmodified	_RRRLLLLLPRI_					0	0	0			REV__ENST00000560665.1_1_15:65804856-65809996:-|nuORF	REV__ENST00000560665.1_1_15:65804856-65809996:-|nuORF	MSMS	A375_MHC_IP_R2	2	710.0723266601562	2	709.993355	1417.97216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.76	1	105.52	105.02	106.02	0.76308								0	0	0	0.1636	1	39631	39631		0	0	1		+		44803	26169	32755	33020	43736	43736					0.27988934109521324
RRRLRPARKWN	11	Unmodified	_RRRLRPARKWN_					0	0	0			REV__ENST00000335565.4_2_X:144903054-144903396:+|nuORF	REV__ENST00000335565.4_2_X:144903054-144903396:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	503.9641418457031	3	503.643031	1507.90726	-0.97304	-0.00049006	0.64915	0.00032694	-0.32388	-0.00016312	503.6432251058059	24.391	0.35555	25.035	24.857	25.212	0.64368					16	6	4	0	0	0	0.73934	1	7927	7927		0	0	1	24331000	+		44804	23672	32756	33021	43737	43737					0.17362752356189048
RRRLRRRHRHL	11	Unmodified	_RRRLRRRHRHL_					0	0	0			REV__ENST00000533005.5_1_11:67811756-67818283:+|nuORF	REV__ENST00000533005.5_1_11:67811756-67818283:+|nuORF	MSMS	A375_MHC_IP_R1	1	537.9696044921875	3	538.008708	1611.00429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.18	1	139.18	138.68	139.68	0								0	0	0	0.1636	1	53507	53507		0	0	1		+		44805	17638	32757	33022	43738	43738					0.22323159355869393
RRRLRRRPV	9	Unmodified	_RRRLRRRPV_					0	0	0			REV__ENST00000243082.4_1_12:54367506-54369194:+|nuORF	REV__ENST00000243082.4_1_12:54367506-54369194:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	633.3170776367188	2	632.918513	1263.82247	-0.60929	-0.00038563	-1.511	-0.00095635	-2.1203	-0.001342	632.9174231224042	142.27	0.15372	142.3	142.23	142.38	0.030731					4	2	2	0	0	0	0.81254	1	55642	55642		2.0598	1.7091	1	12161000	+		44806	23101	32758	33023	43739	43739					0.20111426610242233
RRRLRRRPV	9	Unmodified	_RRRLRRRPV_					0	0	0			REV__ENST00000243082.4_1_12:54367506-54369194:+|nuORF	REV__ENST00000243082.4_1_12:54367506-54369194:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	632.918513	1263.82247	-1.0054	-0.00063631	-1.6968	-0.0010739	-2.7022	-0.0017103	632.9172953952586	142.26	0.15076	142.26	142.18	142.34	0	-0.021356	-7.2669E-05	NaN	2.0598	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12660000	+		44807	23101	32758	33023							0.20111426610242233
RRRLVPRYRLQ	11	Unmodified	_RRRLVPRYRLQ_					0	0	0		ENSG00000162063|ENST00000397066|CCNF	ENSG00000162063|ENST00000397066|CCNF	ENSG00000162063|ENST00000397066|CCNF	MSMS	A375_MHC_IP_R2	2	756.9740600585938	2	756.970942	1511.92733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.104	1	47.865	47.365	48.365	0.76128								0	0	0	0.16354	1	17655	17655		0.30703	0.30703	1				44808	6505	32759	33024	43740	43740					0.19184503296173716
RRRMKRRRRWI	11	Unmodified	_RRRMKRRRRWI_					0	0	0		ENST00000257749.8_2_6:90661229-90661412:-|nuORF	ENST00000257749.8_2_6:90661229-90661412:-|nuORF	ENST00000257749.8_2_6:90661229-90661412:-|nuORF	MSMS	A375_MHC_IP_R2	2	835.5184326171875	2	835.51586	1669.01717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.536	1	85.272	84.772	85.772	0.73601								0	0	0	0.1636	1	32136	32136		0	0	1				44809	10250	32760	33025	43741	43741					0.209418544237451
RRRMRRTRRRL	11	Unmodified	_RRRMRRTRRRL_					0	0	0		ENST00000423021.2_1_9:5112335-5112581:+|nuORF	ENST00000423021.2_1_9:5112335-5112581:+|nuORF	ENST00000423021.2_1_9:5112335-5112581:+|nuORF	MSMS	A375_MHC_IP_R2	2	807.0048217773438	2	807.003116	1611.99168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.51	1	121.05	120.55	121.55	0.5321								0	0	0	0.1636	1	46003	46003		0	0	1				44810	11754	32761	33026	43742	43742					0.21016379901311666
RRRPKRRKSRN	11	Unmodified	_RRRPKRRKSRN_					0	0	0			REV__ENST00000575617.1_1_16:3285285-3286042:-|nuORF	REV__ENST00000575617.1_1_16:3285285-3286042:-|nuORF	MSMS	A375_MHC_IP_R2	2	755.7040405273438	2	755.474715	1508.93488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.2	1	144.23	143.73	144.73	0.024414								0	0	0	0.1636	1	56334	56334		0	0	1		+		44811	26307	32762	33027	43743	43743					0.20076655616458083
RRRPKRRKSRN	11	Unmodified	_RRRPKRRKSRN_					0	0	0			REV__ENST00000575617.1_1_16:3285285-3286042:-|nuORF	REV__ENST00000575617.1_1_16:3285285-3286042:-|nuORF	MSMS	A375_MHC_IP_R2	2	755.8412475585938	2	755.474715	1508.93488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.44	1	144.46	143.96	144.96	0.024414								0	0	0	0.1636	1	56419	56419		0	0	1		+		44812	26307	32762	33027	43744	43744					0.20076655616458083
RRRPLLLFYVF	11	Unmodified	_RRRPLLLFYVF_					0	0	0			REV__ENST00000340384.4_1_9:140135667-140136192:+|nuORF	REV__ENST00000340384.4_1_9:140135667-140136192:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	370.9537048339844	4	370.729132	1478.88742	0.25553	9.4733E-05	0.22804	8.454E-05	0.48357	0.00017927	370.7292300769381	65.356	0.25312	66.094	65.867	66.121	0.73811					5	4	2	0	0	0	0.73924	1	24723	24723		0.094841	0	1	859460	+		44813	23719	32763	33028	43745	43745					0.167135635728755
RRRPLLLFYVF	11	Unmodified	_RRRPLLLFYVF_					0	0	0			REV__ENST00000340384.4_1_9:140135667-140136192:+|nuORF	REV__ENST00000340384.4_1_9:140135667-140136192:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		4	370.729132	1478.88742	0.12366	4.5845E-05	0.55352	0.00020521	0.67718	0.00025105	370.7294219830847	66.453	0.15158	66.453	66.326	66.478	0	0.17906	0.00018946	NaN	0.094841	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	847700	+		44814	23719	32763	33028							0.167135635728755
RRRPRHIRKRL	11	Unmodified	_RRRPRHIRKRL_					0	0	0			REV__nc|ENSG00000164542|Q8NCT3|MATCAP2	REV__nc|ENSG00000164542|Q8NCT3|MATCAP2	MSMS	A375_MHC_IP_R1	1	772.5049438476562	2	772.503275	1542.992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.789	1	72.789	72.289	73.289	0								0	0	0	0.1636	1	26489	26489		0	0	1		+		44815	27326	32764	33029	43746	43746					0.24222122892797415
RRRPRRRRRRA	11	Unmodified	_RRRPRRRRRRA_					0	0	0		ENST00000378308.6_2_X:40944993-40945185:+|nuORF	ENST00000378308.6_2_X:40944993-40945185:+|nuORF	ENST00000378308.6_2_X:40944993-40945185:+|nuORF	MSMS	A375_MHC_IP_R2	2	796.5106201171875	2	796.512497	1591.01044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.035002	1	0.50544	0.0054443	1.0054	0.47044								0	0	0	0.1636	1	12	12		0	0	1				44816	11314	32765	33030	43747	43747					0.23857677587352555
RRRPRRRTRRQ	11	Unmodified	_RRRPRRRTRRQ_					0	0	0			REV__ENST00000245923.8_1_19:45998158-46000175:-|nuORF	REV__ENST00000245923.8_1_19:45998158-46000175:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	798.3961791992188	2	797.496513	1592.97847	-0.77991	-0.00062198	-0.85927	-0.00068527	-1.6392	-0.0013072	797.4960405482456	149.27	1.1597	149.27	148.71	149.87	0					74	33	3	0	0	0	0.73934	1	56981	56981		0	0	1	264230	+		44817	23110	32766	33031	43748	43748					0.20570265113542519
RRRPRWRQLRL	11	Unmodified	_RRRPRWRQLRL_					0	0	0		ENST00000533444.1_1_8:145149952-145150036:+|nuORF	ENST00000533444.1_1_8:145149952-145150036:+|nuORF	ENST00000533444.1_1_8:145149952-145150036:+|nuORF	MSMS	A375_MHC_IP_R2	2	796.9955444335938	2	796.995283	1591.97601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.13465	1	0.6051	0.1051	1.1051	0.47044								0	0	0	0.1636	1	48	48		0	0	1				44818	13198	32767	33032	43749	43749					0.20370416655919144
RRRPRYRKRLR	11	Unmodified	_RRRPRYRKRLR_					0	0	0		nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3	nc|ENSG00000165288|Q6RI45-3|BRWD3	nc|ENSG00000165288|Q6RI45-3|BRWD3	MSMS	A375_MHC_IP_R2	2	807.0153198242188	2	807.014007	1612.01346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.897	1	29.596	29.096	30.096	0.69872								0	0	0	0.1636	1	10037	10037		0	0	1				44819	6937	32768	33033	43750	43750					0.23193507921496348
RRRQARLRTP	10	Unmodified	_RRRQARLRTP_					0	0	0		ENST00000472558.6_1_12:6649653-6649737:-|nuORF	ENST00000472558.6_1_12:6649653-6649737:-|nuORF	ENST00000472558.6_1_12:6649653-6649737:-|nuORF	MSMS	A375_MHC_IP_R2	2	655.4049682617188	2	655.405435	1308.79632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.6	1	146.62	146.12	147.12	0.019913								0	0	0	0.15631	1	57080	57080		0.35063	0.043601	1				44820	12374	32769	33034	43751	43751					0.15427112648103503
RRRQEWERQY	10	Unmodified	_RRRQEWERQY_					0	0	0		ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	MSMS	A375_MHC_IP_R1	1	502.9764404296875	3	502.927274	1505.75999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.593	1	20.593	20.093	21.093	0								0	0	0	0.15588	1	5310	5310		1.7423	0.7287	1				44821	6372	32770	33035	43752	43752					0.027341909607457637
RRRQFYPRNRP	11	Unmodified	_RRRQFYPRNRP_					0	0	0			REV__ENSG00000006047|ENST00000007699|YBX2	REV__ENSG00000006047|ENST00000007699|YBX2	MSMS	A375_MHC_IP_R2	2	773.5073852539062	2	773.434724	1544.85489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.968	1	36.731	36.231	37.231	0.76338								0	0	0	0.16354	1	13071	13071		0.30703	0	1		+		44822	16129	32771	33036	43753	43753					0.10426169222591852
RRRRAHRERHR	11	Unmodified	_RRRRAHRERHR_					0	0	0			REV__ENST00000317357.9_1_6:107955847-107956252:+|nuORF	REV__ENST00000317357.9_1_6:107955847-107956252:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	529.7124633789062	3	529.312567	1584.91587	-0.45491	-0.00024079	-0.69587	-0.00036833	-1.1508	-0.00060912	529.3124256576767	134.34	0.81561	134.48	134.18	135	0.13901					25	15	2	0	0	0	0.73924	1	52955	52955		0.094841	0	1	1598000	+		44823	23545	32772	33037	43754	43754					0.14681119045371815
RRRRAHRERHR	11	Unmodified	_RRRRAHRERHR_					0	0	0			REV__ENST00000317357.9_1_6:107955847-107956252:+|nuORF	REV__ENST00000317357.9_1_6:107955847-107956252:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	530.007080078125	3	529.312567	1584.91587	-0.45491	-0.00024079	-0.69587	-0.00036833	-1.1508	-0.00060912	529.3124256576767	134.34	0.81561	134.48	134.18	135	0.13901					25	15	2	0	0	0	1.0015	1	52893	52893		0.40827	0	1	1598000	+		44824	23545	32772	33037	43755	43755					0.14681119045371815
RRRRFDRERRF	11	Unmodified	_RRRRFDRERRF_					0	0	0			REV__ENST00000488868.1_1_1:28559432-28559522:-|nuORF	REV__ENST00000488868.1_1_1:28559432-28559522:-|nuORF	MSMS	A375_MHC_IP_R2	2	825.869384765625	2	825.469629	1648.92471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.42	1	99.18	98.68	99.68	0.75977								0	0	0	0.16355	1	37339	37339		0.26902	0.26902	1		+		44825	25363	32773	33038	43756	43756					0.12620047891186914
RRRRFWREVQR	11	Unmodified	_RRRRFWREVQR_					0	0	0			REV__ENSG00000143418|ENST00000368954|CERS2	REV__ENSG00000143418|ENST00000368954|CERS2	MULTI-MSMS	A375_MHC_IP_R2	2	823.3743896484375	2	822.974548	1643.93454	-0.74464	-0.00061282	1.1197	0.00092148	0.37506	0.00030866	822.9755256586069	63.68	0.55953	64.42	64.139	64.699	0.74022					28	10	4	0	0	0	0.73934	1	24115	24115		0	0	1	6591400	+		44826	19357	32774	33039	43757	43757					0.1383323589657266
RRRRFWREVQR	11	Unmodified	_RRRRFWREVQR_					0	0	0			REV__ENSG00000143418|ENST00000368954|CERS2	REV__ENSG00000143418|ENST00000368954|CERS2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	822.974548	1643.93454	-0.41185	-0.00033894	1.1366	0.00093539	0.72475	0.00059645	823.4768483473645	64.451	0.45749	64.451	64.191	64.649	0	0.015709	1.1192E-05	NaN	0	22	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4404400	+		44827	19357	32774	33039							0.1383323589657266
RRRRFWREVQR	11	Unmodified	_RRRRFWREVQR_					0	0	0			REV__ENSG00000143418|ENST00000368954|CERS2	REV__ENSG00000143418|ENST00000368954|CERS2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	822.974548	1643.93454	-0.74464	-0.00061282	1.1197	0.00092148	0.37506	0.00030866	822.9755256586069	63.68	0.55953	64.42	64.139	64.699	0.74022	-0.015709	-1.6624E-05	NaN	0	28	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6591400	+		44828	19357	32774	33039							0.1383323589657266
RRRRKKISYRK	11	Unmodified	_RRRRKKISYRK_					0	0	0		ENST00000395183.6_1_4:86699881-86700061:+|nuORF	ENST00000395183.6_1_4:86699881-86700061:+|nuORF	ENST00000395183.6_1_4:86699881-86700061:+|nuORF	MSMS	A375_MHC_IP_R2	2	773.9872436523438	2	773.997491	1545.98043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.391	1	30.09	29.59	30.59	0.69872								0	0	0	0.1636	1	10256	10256		0	0	1				44829	11466	32775	33040	43758	43758					0.22927881078817336
RRRRKRRASRR	11	Unmodified	_RRRRKRRASRR_					0	0	0		chr6:34243712-34244831|207|25.64|0.7|5.19|+|1|None,HMGA1|2	chr6:34243712-34244831|207|25.64|0.7|5.19|+|1|None,HMGA1|2	chr6:34243712-34244831|207|25.64|0.7|5.19|+|1|None,HMGA1|2	MSMS	A375_MHC_IP_R2	2	777.6264038085938	2	777.499056	1552.98356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.88	1	112.61	112.11	113.11	0.72458								0	0	0	0.1636	1	42181	42181		0	0	1				44830	496	32776	33041	43759	43759					0.22918568976206188
RRRRLKKPKVL	11	Unmodified	_RRRRLKKPKVL_					0	0	0		ENST00000367265.7_1_1:202777435-202777672:-|nuORF	ENST00000367265.7_1_1:202777435-202777672:-|nuORF	ENST00000367265.7_1_1:202777435-202777672:-|nuORF	MSMS	A375_MHC_IP_R1	1	725.4118041992188	2	725.501878	1448.9892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.739	1	86.739	86.239	87.239	0								0	0	0	0.1636	1	31813	31813		0	0	1				44831	11086	32777	33042	43760	43760					0.2826685471527526
RRRRLVRKRKK	11	Unmodified	_RRRRLVRKRKK_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF;MYOF|p.A1785Pfs*8|1|0.41|ENSG00000138119|chr10:93323281-93323281|C/-|frameshift_variant	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MSMS	A375_MHC_IP_R2	2	776.4782104492188	2	776.534575	1551.0546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.49	1	125.78	125.28	126.28	0.2951								0	0	0	0.1636	1	48947	48947		0	0	1				44832	4961	32778	33043	43761	43761					0.3011126896096812
RRRRLWRWWKL	11	Unmodified	_RRRRLWRWWKL_					0	0	0		chr12:54283225-54283827|472|59.15|0.0|22.5|+|1|HNRNPA1,HNRNPA1|2	chr12:54283225-54283827|472|59.15|0.0|22.5|+|1|HNRNPA1,HNRNPA1|2	chr12:54283225-54283827|472|59.15|0.0|22.5|+|1|HNRNPA1,HNRNPA1|2	MSMS	A375_MHC_IP_R1	1	856.5182495117188	2	856.515851	1711.01715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.862	1	80.862	80.362	81.362	0								0	0	0	0.1636	1	29544	29544		0	0	1				44833	415	32779	33044	43762	43762					0.19008177695377526
RRRRLWRWWKL	11	Unmodified	_RRRRLWRWWKL_					0	0	0		chr12:54283225-54283827|472|59.15|0.0|22.5|+|1|HNRNPA1,HNRNPA1|2	chr12:54283225-54283827|472|59.15|0.0|22.5|+|1|HNRNPA1,HNRNPA1|2	chr12:54283225-54283827|472|59.15|0.0|22.5|+|1|HNRNPA1,HNRNPA1|2	MSMS	A375_MHC_IP_R2	2	856.5162963867188	2	856.515851	1711.01715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.85	1	122.29	121.79	122.79	0.44488								0	0	0	0.1636	1	46653	46653		0	0	1				44834	415	32779	33044	43763	43763					0.19008177695377526
RRRRLWRWWWK	11	Unmodified	_RRRRLWRWWWK_					0	0	0		chr12:54283228-54283827|472|32.8|0.0|21.65|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|472|32.8|0.0|21.65|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|472|32.8|0.0|21.65|+|1|HNRNPA1,HNRNPA1|2	MULTI-MSMS	A375_MHC_IP_R2	2	595.6464233398438	3	595.678076	1784.0124	-0.91329	-0.00054403	-0.72149	-0.00042978	-1.6348	-0.00097381	595.6777797286492	58.295	2.2274	59.044	58.528	60.755	0.74894					59	43	2	0	0	0	0.73934	1	22108	22108		0	0	1	2235200			44835	416	32780	33045	43764	43764					0.15175293552601943
RRRRLWRWWWK	11	Unmodified	_RRRRLWRWWWK_					0	0	0		chr12:54283228-54283827|472|32.8|0.0|21.65|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|472|32.8|0.0|21.65|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|472|32.8|0.0|21.65|+|1|HNRNPA1,HNRNPA1|2	MULTI-MSMS	A375_MHC_IP_R2	2	595.652099609375	3	595.678076	1784.0124	-0.67218	-0.0004004	0.38671	0.00023036	-0.28546	-0.00017005	595.6784523575737	66.499	0.40753	67.235	67.138	67.546	0.73631					11	7	2	0	0	0	0.73934	2	25192	25192;25214		0	0	1	1939600			44836	416	32780	33045	43765;43766	43765					0.15175293552601943
RRRRLWRWWWK	11	Unmodified	_RRRRLWRWWWK_					0	0	0		chr12:54283228-54283827|472|32.8|0.0|21.65|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|472|32.8|0.0|21.65|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|472|32.8|0.0|21.65|+|1|HNRNPA1,HNRNPA1|2	MULTI-MSMS	A375_MHC_IP_R2	2	596.0773315429688	3	595.678076	1784.0124	-0.54523	-0.00032478	-0.7603	-0.0004529	-1.3055	-0.00077768	595.6776036957281	70.593	0.50577	71.327	70.997	71.503	0.73421					13	9	2	0	0	0	0.73934	1	26752	26752		0	0	1	3143800			44837	416	32780	33045	43767	43767					0.15175293552601943
RRRRPDLFRR	10	Unmodified	_RRRRPDLFRR_					0	0	0		ENSG00000152795|ENST00000295470|HNRNPDL	ENSG00000152795|ENST00000295470|HNRNPDL	ENSG00000152795|ENST00000295470|HNRNPDL	MULTI-MSMS	A375_MHC_IP_R1	1	477.0234375	3	476.623748	1426.84942	-0.83814	-0.00039948	0.5823	0.00027754	-0.25584	-0.00012194	476.62388549305604	138.03	2.8543	138.03	137.74	140.6	0					125	55	5	0	0	0	0.72658	1	53091	53091		0.13989	0.056541	1	36833000			44838	5985	32781	33046	43768	43768					0.15306490430748454
RRRRPDLFRR	10	Unmodified	_RRRRPDLFRR_					0	0	0		ENSG00000152795|ENST00000295470|HNRNPDL	ENSG00000152795|ENST00000295470|HNRNPDL	ENSG00000152795|ENST00000295470|HNRNPDL	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	476.623748	1426.84942	-0.83814	-0.00039948	0.5823	0.00027754	-0.25584	-0.00012194	476.62388549305604	138.03	2.8543	138.03	137.74	140.6	0	-0.027592	0.0003495	NaN	0.13989	125	55	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36833000			44839	5985	32781	33046							0.15306490430748454
RRRRPHRP	8	Unmodified	_RRRRPHRP_					0	0	0		ENST00000261721.8_1_15:83735740-83736061:-|nuORF	ENST00000261721.8_1_15:83735740-83736061:-|nuORF	ENST00000261721.8_1_15:83735740-83736061:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1132.0927734375	1	1130.68784	1129.68056	0.31888	0.00036056	0.58017	0.00065599	0.89905	0.0010165	1130.688279472995	145.26	0.37476	145.28	145.09	145.46	0.021408					40	24	2	0	0	0	0.77861	1	56680	56680		0	0	1	245500			44840	10289	32782	33047	43769	43769					0.12090633587922639
RRRRPKRRRRK	11	Unmodified	_RRRRPKRRRRK_					0	0	0		ENST00000560168.1_1_19:46269581-46272089:-|nuORF	ENST00000560168.1_1_19:46269581-46272089:-|nuORF	ENST00000560168.1_1_19:46269581-46272089:-|nuORF	MSMS	A375_MHC_IP_R1	1	811.0377197265625	2	811.038348	1620.06214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.06	1	139.06	138.56	139.56	0								0	0	0	0.1636	1	53464	53464		0	0	1				44841	13487	32783	33048	43770	43770					0.2769142128126987
RRRRPKRRRRK	11	Unmodified	_RRRRPKRRRRK_					0	0	0		ENST00000560168.1_1_19:46269581-46272089:-|nuORF	ENST00000560168.1_1_19:46269581-46272089:-|nuORF	ENST00000560168.1_1_19:46269581-46272089:-|nuORF	MSMS	A375_MHC_IP_R2	2	541.0670776367188	3	541.027991	1620.06214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.423	1	90.155	89.655	90.655	0.7318								0	0	0	0.1636	1	34030	34030		0	0	1				44842	13487	32783	33048	43771	43771					0.2769142128126987
RRRRPQNFRVG	11	Unmodified	_RRRRPQNFRVG_					0	0	0		ENST00000262646.11_1_8:61429433-61429637:+|nuORF	ENST00000262646.11_1_8:61429433-61429637:+|nuORF	ENST00000262646.11_1_8:61429433-61429637:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	482.0175476074219	3	481.283503	1440.82868	-0.73594	-0.00035419	-0.023968	-1.1536E-05	-0.7599	-0.00036573	481.61790875346907	140.96	1.3393	140.96	139.93	141.27	0					40	25	2	0	0	0	1.0014	1	54168	54168		0	0	1	1192800			44843	10312	32784	33049	43772	43772					0.12589900051079894
RRRRPRRRRPR	11	Unmodified	_RRRRPRRRRPR_					0	0	0		ENST00000557385.1_1_X:119384635-119386530:+|nuORF;ENST00000326624.2_1_X:119384635-119387278:+|nuORF	ENST00000557385.1_1_X:119384635-119386530:+|nuORF	ENST00000557385.1_1_X:119384635-119386530:+|nuORF	MSMS	A375_MHC_IP_R1	1	809.51953125	2	809.520322	1617.02609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.657	1	81.657	81.157	82.157	0								0	0	0	0.1636	1	29843	29843		0	0	1				44844	10735	32785	33050	43773	43773					0.2422596410440292
RRRRPRRRVP	10	Unmodified	_RRRRPRRRVP_					0	0	0			REV__ENST00000358344.7_1_5:177631560-177631635:+|nuORF	REV__ENST00000358344.7_1_5:177631560-177631635:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	352.3800964355469	4	351.980347	1403.89228	-0.35546	-0.00012511	-0.14083	-4.9568E-05	-0.49628	-0.00017468	352.231039915115	55.859	0.45799	56.609	56.287	56.745	0.75015					21	8	3	0	0	0	0.72716	1	21098	21098		0.13989	0.13989	1	4214700	+		44845	23854	32786	33051	43774	43774					0.20649305278834618
RRRRPRRRVP	10	Unmodified	_RRRRPRRRVP_					0	0	0			REV__ENST00000358344.7_1_5:177631560-177631635:+|nuORF	REV__ENST00000358344.7_1_5:177631560-177631635:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		4	351.980347	1403.89228	-0.039717	-1.3979E-05	-0.044326	-1.5602E-05	-0.084043	-2.9581E-05	351.9802209219348	56.942	0.71461	56.942	56.599	57.313	0	0.16671	8.1512E-05	NaN	0.13989	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3275200	+		44846	23854	32786	33051							0.20649305278834618
RRRRPRRRVPV	11	Unmodified	_RRRRPRRRVPV_					0	0	0			REV__ENST00000358344.7_1_5:177631560-177631635:+|nuORF	REV__ENST00000358344.7_1_5:177631560-177631635:+|nuORF	MSMS	A375_MHC_IP_R1	1	752.3982543945312	2	752.487625	1502.9607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.42	1	109.42	108.92	109.92	0								0	0	0	0.16353	1	40134	40134		0.35063	0.043601	1		+		44847	23854	32787	33052	43775	43775					0.22933549858680635
RRRRPTRRTMG	11	Unmodified	_RRRRPTRRTMG_					0	0	0			REV__ENST00000361972.8_1_10:7212945-7217999:-|nuORF	REV__ENST00000361972.8_1_10:7212945-7217999:-|nuORF	MSMS	A375_MHC_IP_R2	2	721.8214111328125	2	721.920926	1441.8273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.13	1	143.16	142.66	143.66	0.030731								0	0	0	0.16337	1	55943	55943		1.1933	0	1		+		44848	23927	32788	33053	43776	43776					0.12405942690702432
RRRRQQQQYRH	11	Unmodified	_RRRRQQQQYRH_					0	0	0			REV__ENSG00000074855|ENST00000159087|ANO8	REV__ENSG00000074855|ENST00000159087|ANO8	MSMS	A375_MHC_IP_R2	2	806.4468994140625	2	806.443612	1610.87267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.84	1	122.29	121.79	122.79	0.44488								0	0	0	0.16353	1	46649	46649		0.35063	0	1		+		44849	16644	32789	33054	43777	43777					0.09166884477440362
RRRRRAHRERH	11	Unmodified	_RRRRRAHRERH_					0	0	0			REV__ENST00000317357.9_1_6:107955847-107956252:+|nuORF	REV__ENST00000317357.9_1_6:107955847-107956252:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	529.7123413085938	3	529.312567	1584.91587	-0.82641	-0.00043743	0.18164	9.6144E-05	-0.64477	-0.00034128	529.3126214964979	134.51	0.8107	134.51	134.17	134.98	0					27	15	3	0	0	0	0.73924	1	51913	51913		0.094841	0	1	2248600	+		44850	23545	32790	33055	43778	43778					0.14681119045394553
RRRRREGPRDE	11	Unmodified	_RRRRREGPRDE_					0	0	0			REV__ENSG00000172985|ENST00000309415|SH3RF3	REV__ENSG00000172985|ENST00000309415|SH3RF3	MSMS	A375_MHC_IP_R2	2	741.9453125	2	741.90907	1481.80359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.54	1	125.84	125.34	126.34	0.2951								0	0	0	0.16203	1	48999	48999		8.1555	2.8586	1		+		44851	21186	32791	33056	43779	43779					0.08195800457883706
RRRRRFVVA	9	Unmodified	_RRRRRFVVA_					0	0	0		ENST00000583932.1_1_17:56065528-56065615:-|nuORF	ENST00000583932.1_1_17:56065528-56065615:-|nuORF	ENST00000583932.1_1_17:56065528-56065615:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	607.6095581054688	2	608.386514	1214.75848	-0.68141	-0.00041456	0.79944	0.00048637	0.11803	7.1808E-05	608.3867895499627	147.1	0.18192	147.1	147.02	147.2	0					31	20	2	0	0	0	0.81779	1	56248	56248		0.52476	0	1	123870			44852	13701	32792	33057	43780	43780					0.15968646453325164
RRRRRFVVA	9	Unmodified	_RRRRRFVVA_					0	0	0		ENST00000583932.1_1_17:56065528-56065615:-|nuORF	ENST00000583932.1_1_17:56065528-56065615:-|nuORF	ENST00000583932.1_1_17:56065528-56065615:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	608.386514	1214.75848	-0.24078	-0.00014649	0.4609	0.00028041	0.22012	0.00013392	608.3865675104089	147.1	0.13907	147.12	147.07	147.21	0.019913	0.011208	-0.00013466	NaN	0.52476	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96454			44853	13701	32792	33057							0.15968646453325164
RRRRRGRHMML	11	Unmodified	_RRRRRGRHMML_					0	0	0		ENST00000288502.8_2_9:117373626-117379440:+|nuORF	ENST00000288502.8_2_9:117373626-117379440:+|nuORF	ENST00000288502.8_2_9:117373626-117379440:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	509.0071105957031	3	508.96149	1523.86264	-0.67433	-0.00034321	0.52669	0.00026807	-0.14763	-7.514E-05	508.9616672112411	133.16	0.91893	133.16	132.69	133.61	0					42	17	3	0	0	0	0.73902	1	51431	51431		0.08335	0.08335	1	7302600			44854	10460	32793	33058	43781	43781					0.1216628194686109
RRRRRGRHMML	11	Unmodified	_RRRRRGRHMML_					0	0	0		ENST00000288502.8_2_9:117373626-117379440:+|nuORF	ENST00000288502.8_2_9:117373626-117379440:+|nuORF	ENST00000288502.8_2_9:117373626-117379440:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	763.8174438476562	2	762.938596	1523.86264	-0.7579	-0.00057823	-0.29755	-0.00022701	-1.0555	-0.00080525	762.938757862059	133.99	1.0646	133.99	133.51	134.57	0					43	20	3	0	0	0	0.73809	1	51643	51643		1.1933	0.88631	1	8093500			44855	10460	32793	33058	43782	43782					0.1216628194686109
RRRRRGRHMML	11	Unmodified	_RRRRRGRHMML_					0	0	0		ENST00000288502.8_2_9:117373626-117379440:+|nuORF	ENST00000288502.8_2_9:117373626-117379440:+|nuORF	ENST00000288502.8_2_9:117373626-117379440:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	509.0072326660156	3	508.96149	1523.86264	-0.65238	-0.00033204	0.50816	0.00025863	-0.14422	-7.3401E-05	508.96163814740135	133.92	1.2235	134.08	133.65	134.88	0.16487					61	23	4	0	0	0	0.73897	1	52771	52771		0.094841	0.094841	1	18805000			44856	10460	32793	33058	43783	43783					0.1216628194686109
RRRRRGRHMML	11	Unmodified	_RRRRRGRHMML_					0	0	0		ENST00000288502.8_2_9:117373626-117379440:+|nuORF	ENST00000288502.8_2_9:117373626-117379440:+|nuORF	ENST00000288502.8_2_9:117373626-117379440:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	762.938596	1523.86264	-0.7579	-0.00057823	-0.29755	-0.00022701	-1.0555	-0.00080525	762.938757862059	133.99	1.0646	133.99	133.51	134.57	0	-0.055583	-0.00018631	NaN	1.1933	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8093500			44857	10460	32793	33058							0.1216628194686109
RRRRRGRHMML	11	Unmodified	_RRRRRGRHMML_					0	0	0		ENST00000288502.8_2_9:117373626-117379440:+|nuORF	ENST00000288502.8_2_9:117373626-117379440:+|nuORF	ENST00000288502.8_2_9:117373626-117379440:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	508.96149	1523.86264	-0.67433	-0.00034321	0.52669	0.00026807	-0.14763	-7.514E-05	508.9616672112411	133.16	0.91893	133.16	132.69	133.61	0	-0.045771	0.0002025	NaN	0.08335	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7302600			44858	10460	32793	33058							0.1216628194686109
RRRRRGRPRPP	11	Unmodified	_RRRRRGRPRPP_					0	0	0		ENST00000406310.5_1_11:64073071-64074640:+|nuORF;ENST00000539594.5_1_11:64073071-64081459:+|nuORF	ENST00000406310.5_1_11:64073071-64074640:+|nuORF	ENST00000406310.5_1_11:64073071-64074640:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	487.7067565917969	3	487.306642	1458.8981	-0.39777	-0.00019384	0.59942	0.0002921	0.20165	9.8265E-05	487.3067550545859	149.13	2.2382	149.15	147.77	150.01	0.018707					150	85	3	0	0	0	0.73934	1	58025	58025		0	0	1	335890			44859	11601	32794	33059	43784	43784					0.18700403790535347
RRRRRKRRRRG	11	Unmodified	_RRRRRKRRRRG_					0	0	0		ENST00000444772.3_1_10:21805118-21806168:-|nuORF	ENST00000444772.3_1_10:21805118-21806168:-|nuORF	ENST00000444772.3_1_10:21805118-21806168:-|nuORF	MSMS	A375_MHC_IP_R1	1	805.194091796875	2	805.025772	1608.03699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.62	1	118.62	118.12	119.12	0								0	0	0	0.1636	1	43734	43734		0	0	1				44860	12021	32795	33060	43785	43785					0.25729366478685733
RRRRRLWRWW	10	Unmodified	_RRRRRLWRWW_					0	0	0		chr12:54283225-54283827|472|59.15|0.0|22.5|+|1|HNRNPA1,HNRNPA1|2;chr12:54283228-54283827|472|32.8|0.0|21.65|+|1|HNRNPA1,HNRNPA1|2	chr12:54283225-54283827|472|59.15|0.0|22.5|+|1|HNRNPA1,HNRNPA1|2;chr12:54283228-54283827|472|32.8|0.0|21.65|+|1|HNRNPA1,HNRNPA1|2	chr12:54283225-54283827|472|59.15|0.0|22.5|+|1|HNRNPA1,HNRNPA1|2	MULTI-SECPEP	A375_MHC_IP_R1	1	542.6821899414062	3	542.987021	1625.93923	-0.53107	-0.00028836	-0.11991	-6.5108E-05	-0.65097	-0.00035347	542.9872872085566	96.604	0.15108	96.604	96.529	96.68	0					4	2	2	0	0	0	0.95062	1	35520	35520		0	0	1	611640			44861	415;416	32796	33061	43786	43786					0.1513016482999774
RRRRRPRRLRI	11	Unmodified	_RRRRRPRRLRI_					0	0	0			REV__nc|ENSG00000114654|Q9HA90|EFCC1	REV__nc|ENSG00000114654|Q9HA90|EFCC1	MSMS	A375_MHC_IP_R2	2	530.9718017578125	3	531.020725	1590.04034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.496	1	89.228	88.728	89.728	0.7318								0	0	0	0.16358	1	33679	33679		0.094841	0	1		+		44862	17836	32797	33062	43787	43787					0.2689261653270023
RRRRRQRRRRQ	11	Unmodified	_RRRRRQRRRRQ_					0	0	0			REV__ENST00000394967.2_1_2:175202164-175202371:+|nuORF	REV__ENST00000394967.2_1_2:175202164-175202371:+|nuORF	MSMS	A375_MHC_IP_R2	2	840.6549682617188	2	840.526136	1679.03772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.88	1	129.12	128.62	129.62	0.23946								0	0	0	0.1636	1	50638	50638		0	0	1		+		44863	24313	32798	33063	43788	43788					0.22536161127732157
RRRRRRERRL	10	Unmodified	_RRRRRRERRL_					0	0	0		ENST00000254998.2_1_20:23331374-23334728:+|nuORF	ENST00000254998.2_1_20:23331374-23334728:+|nuORF	ENST00000254998.2_1_20:23331374-23334728:+|nuORF	MSMS	A375_MHC_IP_R2	2	504.0337829589844	3	503.989313	1508.94611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.75	1	148.77	148.27	149.27	0.018707								0	0	0	0.15642	1	57759	57759		0	0	1				44864	10231	32799	33064	43789	43789					0.21199477710570136
RRRRRRERRL	10	Unmodified	_RRRRRRERRL_					0	0	0		ENST00000254998.2_1_20:23331374-23334728:+|nuORF	ENST00000254998.2_1_20:23331374-23334728:+|nuORF	ENST00000254998.2_1_20:23331374-23334728:+|nuORF	MSMS	A375_MHC_IP_R2	2	504.0343322753906	3	503.989313	1508.94611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.21	1	149.22	148.72	149.72	0.018707								0	0	0	0.15642	1	57917	57917		0	0	1				44865	10231	32799	33064	43790	43790					0.21199477710570136
RRRRRRERRL	10	Unmodified	_RRRRRRERRL_					0	0	0		ENST00000254998.2_1_20:23331374-23334728:+|nuORF	ENST00000254998.2_1_20:23331374-23334728:+|nuORF	ENST00000254998.2_1_20:23331374-23334728:+|nuORF	MSMS	A375_MHC_IP_R2	2	504.0339050292969	3	503.989313	1508.94611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.41	1	149.43	148.93	149.93	0.01825								0	0	0	0.15642	1	57990	57990		0	0	1				44866	10231	32799	33064	43791	43791					0.21199477710570136
RRRRRRLLLLL	11	Unmodified	_RRRRRRLLLLL_					0	0	0		ENST00000492275.5_1_21:38445580-38480706:+|nuORF;ENST00000355666.5_1_21:38445580-38459609:+|nuORF	ENST00000492275.5_1_21:38445580-38480706:+|nuORF	ENST00000492275.5_1_21:38445580-38480706:+|nuORF	MSMS	A375_MHC_IP_R1	1	760.9279174804688	2	761.026052	1520.03755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.97	1	117.97	117.47	118.47	0								0	0	0	0.1636	1	43376	43376		0	0	1				44867	10955	32800	33065	43792	43792					0.29833348355214184
RRRRRRLLLLL	11	Unmodified	_RRRRRRLLLLL_					0	0	0		ENST00000492275.5_1_21:38445580-38480706:+|nuORF;ENST00000355666.5_1_21:38445580-38459609:+|nuORF	ENST00000492275.5_1_21:38445580-38480706:+|nuORF	ENST00000492275.5_1_21:38445580-38480706:+|nuORF	MSMS	A375_MHC_IP_R2	2	761.00390625	2	761.026052	1520.03755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.03	1	118.64	118.14	119.14	0.60909								0	0	0	0.1636	1	44768	44768		0	0	1				44868	10955	32800	33065	43793	43793					0.29833348355214184
RRRRRRPLWRV	11	Unmodified	_RRRRRRPLWRV_					0	0	0		ENSG00000171873|ENST00000379453|ADRA1D	ENSG00000171873|ENST00000379453|ADRA1D	ENSG00000171873|ENST00000379453|ADRA1D	MSMS	A375_MHC_IP_R1	1	804.0531005859375	2	804.008725	1606.0029	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.71	1	124.71	124.21	125.21	0								0	0	0	0.1636	1	47074	47074		0	0	1				44869	7655	32801	33066	43794	43794					0.22413525267074874
RRRRRRPSFFF	11	Unmodified	_RRRRRRPSFFF_					0	0	0		ENST00000469704.1_1_20:17934783-17949290:-|nuORF	ENST00000469704.1_1_20:17934783-17949290:-|nuORF	ENST00000469704.1_1_20:17934783-17949290:-|nuORF	MSMS	A375_MHC_IP_R1	1	527.6819458007812	3	527.643031	1579.90726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.822	1	86.822	86.322	87.322	0								0	0	0	0.16351	1	31845	31845		0.45452	0.35968	1				44870	12326	32802	33067	43795	43795					0.14050752356183693
RRRRRRQRRRG	11	Unmodified	_RRRRRRQRRRG_					0	0	0			REV__ENST00000586027.5_1_19:14602515-14606910:-|nuORF	REV__ENST00000586027.5_1_19:14602515-14606910:-|nuORF	MSMS	A375_MHC_IP_R2	2	805.0065307617188	2	805.007579	1608.00061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.6	1	99.36	98.86	99.86	0.75977								0	0	0	0.1636	1	37405	37405		0	0	1		+		44871	26381	32803	33068	43796	43796					0.22092489581973496
RRRRRRRCRPR	11	Unmodified	_RRRRRRRCRPR_					0	0	0			REV__ENST00000447274.6_1_11:67056466-67056871:+|nuORF	REV__ENST00000447274.6_1_11:67056466-67056871:+|nuORF	MSMS	A375_MHC_IP_R1	1	812.56640625	2	812.498533	1622.98251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.34	1	146.34	145.84	146.84	0								0	0	0	0.1636	1	55992	55992		0	0	1		+		44872	24869	32804	33069	43797	43797					0.19594031335645923
RRRRRRRGRHM	11	Unmodified	_RRRRRRRGRHM_					0	0	0		ENST00000288502.8_2_9:117373626-117379440:+|nuORF	ENST00000288502.8_2_9:117373626-117379440:+|nuORF	ENST00000288502.8_2_9:117373626-117379440:+|nuORF	MSMS	A375_MHC_IP_R2	2	796.93505859375	2	796.977433	1591.94031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.1	1	126.4	125.9	126.9	0.2951								0	0	0	0.16337	1	49313	49313		1.1933	0.88631	1				44873	10460	32805	33070	43798	43798					0.1680205592724633
RRRRRRRKNSL	11	Unmodified	_RRRRRRRKNSL_					0	0	0		ENST00000607809.5_1_12:54472874-54474119:-|nuORF	ENST00000607809.5_1_12:54472874-54474119:-|nuORF	ENST00000607809.5_1_12:54472874-54474119:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	777.390869140625	2	777.493439	1552.97232	-0.81837	-0.00063627	0.28679	0.00022298	-0.53157	-0.00041329	777.4936593178577	149.63	0.15903	149.63	149.56	149.72	0					7	5	2	0	0	0	1.0015	1	57076	57076		0	0	1	81245			44874	13923	32806	33071	43799	43799					0.21795746882071398
RRRRRRRMWC	10	Unmodified	_RRRRRRRMWC_					0	0	0			REV__ENST00000302327.3_1_4:184426184-184426352:+|nuORF	REV__ENST00000302327.3_1_4:184426184-184426352:+|nuORF	MSMS	A375_MHC_IP_R1	1	766.3692016601562	2	766.430938	1530.84732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.56	1	149.56	149.06	150.06	0								0	0	0	0.15628	1	57074	57074		0.45834	0.15131	1		+		44875	23433	32807	33072	43800	43800					0.10313415149676075
RRRRRRRRARA	11	Unmodified	_RRRRRRRRARA_					0	0	0			REV__ENST00000253008.2_1_9:133556683-133557598:+|nuORF	REV__ENST00000253008.2_1_9:133556683-133557598:+|nuORF	MSMS	A375_MHC_IP_R1	1	783.5269775390625	2	783.504672	1564.99479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.209	1	71.209	70.709	71.709	0								0	0	0	0.16354	1	25867	25867		0.30703	0.03801	1		+		44876	23133	32808	33073	43801	43801					0.23489391070347665
RRRRRRRREAT	11	Unmodified	_RRRRRRRREAT_					0	0	0		ENST00000372324.5_1_1:44444922-44446927:+|nuORF;ENST00000497866.5_1_1:44444922-44446927:+|nuORF	ENST00000372324.5_1_1:44444922-44446927:+|nuORF	ENST00000372324.5_1_1:44444922-44446927:+|nuORF	MSMS	A375_MHC_IP_R2	2	785.0180053710938	2	784.980696	1567.94684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.13	1	128.37	127.87	128.87	0.24184								0	0	0	0.16355	1	50297	50297		0.26902	0	1				44877	11194	32809	33074	43802	43802					0.18558272359655348
RRRRRRRRLFF	11	Unmodified	_RRRRRRRRLFF_					0	0	0		ENST00000550735.6_1_12:112280040-112280175:+|nuORF	ENST00000550735.6_1_12:112280040-112280175:+|nuORF	ENST00000550735.6_1_12:112280040-112280175:+|nuORF	MSMS	A375_MHC_IP_R1	1	838.0301513671875	2	838.027449	1674.04034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.46	1	101.46	100.96	101.96	0								0	0	0	0.1636	1	37289	37289		0	0	1				44878	13374	32810	33075	43803	43803					0.23028616532701562
RRRRRRRRLFF	11	Unmodified	_RRRRRRRRLFF_					0	0	0		ENST00000550735.6_1_12:112280040-112280175:+|nuORF	ENST00000550735.6_1_12:112280040-112280175:+|nuORF	ENST00000550735.6_1_12:112280040-112280175:+|nuORF	MSMS	A375_MHC_IP_R2	2	559.023193359375	3	559.020725	1674.04034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.19	1	123.57	123.07	124.07	0.3766								0	0	0	0.1636	1	47294	47294		0	0	1				44879	13374	32810	33075	43804	43804					0.23028616532701562
RRRRRRRRPFL	11	Unmodified	_RRRRRRRRPFL_					0	0	0			REV__ENST00000222747.7_1_7:120497939-120498116:-|nuORF	REV__ENST00000222747.7_1_7:120497939-120498116:-|nuORF	MSMS	A375_MHC_IP_R1	1	813.020263671875	2	813.019624	1624.02469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.31	1	101.31	100.81	101.81	0								0	0	0	0.1636	1	37234	37234		0	0	1		+		44880	23055	32811	33076	43805	43805					0.23764330015660562
RRRRRRRRPFL	11	Unmodified	_RRRRRRRRPFL_					0	0	0			REV__ENST00000222747.7_1_7:120497939-120498116:-|nuORF	REV__ENST00000222747.7_1_7:120497939-120498116:-|nuORF	MSMS	A375_MHC_IP_R2	2	813.0208740234375	2	813.019624	1624.02469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.045956	1	0.5164	0.016398	1.0164	0.47044								0	0	0	0.1636	1	16	16		0	0	1		+		44881	23055	32811	33076	43806	43806					0.23764330015660562
RRRRRRRRPFL	11	Unmodified	_RRRRRRRRPFL_					0	0	0			REV__ENST00000222747.7_1_7:120497939-120498116:-|nuORF	REV__ENST00000222747.7_1_7:120497939-120498116:-|nuORF	MSMS	A375_MHC_IP_R2	2	813.0222778320312	2	813.019624	1624.02469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.809	1	100.57	100.07	101.07	0.76278								0	0	0	0.1636	1	37858	37858		0	0	1		+		44882	23055	32811	33076	43807	43807					0.23764330015660562
RRRRRRRRPFL	11	Unmodified	_RRRRRRRRPFL_					0	0	0			REV__ENST00000222747.7_1_7:120497939-120498116:-|nuORF	REV__ENST00000222747.7_1_7:120497939-120498116:-|nuORF	MSMS	A375_MHC_IP_R2	2	813.023193359375	2	813.019624	1624.02469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.07	1	102.83	102.33	103.33	0.76428								0	0	0	0.1636	1	38682	38682		0	0	1		+		44883	23055	32811	33076	43808	43808					0.23764330015660562
RRRRRRRRPFL	11	Unmodified	_RRRRRRRRPFL_					0	0	0			REV__ENST00000222747.7_1_7:120497939-120498116:-|nuORF	REV__ENST00000222747.7_1_7:120497939-120498116:-|nuORF	MSMS	A375_MHC_IP_R2	2	813.0203247070312	2	813.019624	1624.02469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.37	1	107.13	106.63	107.63	0.75977								0	0	0	0.1636	1	40207	40207		0	0	1		+		44884	23055	32811	33076	43809	43809					0.23764330015660562
RRRRRRRRRRH	11	Unmodified	_RRRRRRRRRRH_					0	0	0		ENST00000337565.9_1_2:111878510-111881339:+|nuORF	ENST00000337565.9_1_2:111878510-111881339:+|nuORF	ENST00000337565.9_1_2:111878510-111881339:+|nuORF	MSMS	A375_MHC_IP_R2	2	572.7354125976562	3	573.034139	1716.08059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.725	1	32.462	31.962	32.962	0.73691								0	0	0	0.16358	1	11235	11235		0.08335	0.08335	1				44885	10831	32812	33077	43810	43810					0.25118975975829017
RRRRRRRRRWC	11	Unmodified	_RRRRRRRRRWC_					0	0	0			REV__ENST00000374994.8_2_9:101867473-101891187:+|nuORF	REV__ENST00000374994.8_2_9:101867473-101891187:+|nuORF	MSMS	A375_MHC_IP_R1	1	857.0134887695312	2	857.011807	1712.00906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.05	1	117.05	116.55	117.55	0								0	0	0	0.1636	1	42952	42952		0	0	1		+		44886	24120	32813	33078	43811	43811					0.18153720226973746
RRRRRRRRVVL	11	Unmodified	_RRRRRRRRVVL_					0	0	0			REV__ENST00000356978.8_1_14:90863393-90866410:+|nuORF	REV__ENST00000356978.8_1_14:90863393-90866410:+|nuORF	MSMS	A375_MHC_IP_R1	1	790.1248779296875	2	790.027449	1578.04034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.59	1	126.59	126.09	127.09	0								0	0	0	0.1636	1	48362	48362		0	0	1		+		44887	23839	32814	33079	43812	43812					0.2744461653271628
RRRRRRRSLRR	11	Unmodified	_RRRRRRRSLRR_					0	0	0			REV__ENST00000220562.8_1_8:28559112-28571023:+|nuORF	REV__ENST00000220562.8_1_8:28559112-28571023:+|nuORF	MSMS	A375_MHC_IP_R2	2	541.968505859375	3	542.019495	1623.03666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.082	1	22.701	22.201	23.201	0.61932								0	0	0	0.1636	1	6994	6994		0	0	1		+		44888	23050	32815	33080	43813	43813					0.2500594675886987
RRRRRRRSRER	11	Unmodified	_RRRRRRRSRER_					0	0	0		nc|ENSG00000105298|Q8WUQ7-2|CACTIN;ENSG00000105298|ENST00000429344|CACTIN;CACTIN|p.R76Afs*37|1|0.39|ENSG00000105298|chr19:3624105-3624106|-/G|frameshift_variant	nc|ENSG00000105298|Q8WUQ7-2|CACTIN	nc|ENSG00000105298|Q8WUQ7-2|CACTIN	MSMS	A375_MHC_IP_R2	2	820.4033813476562	2	820.504869	1638.99519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.37	1	125.66	125.16	126.16	0.2951								0	0	0	0.1636	1	48848	48848		0	0	1				44889	2588	32816	33081	43814	43814					0.20124765999503325
RRRRRRRTRAW	11	Unmodified	_RRRRRRRTRAW_					0	0	0		ENST00000276602.10_1_8:73921164-73926156:+|nuORF	ENST00000276602.10_1_8:73921164-73926156:+|nuORF	ENST00000276602.10_1_8:73921164-73926156:+|nuORF	MSMS	A375_MHC_IP_R1	1	813.3428955078125	2	813.499056	1624.98356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.41	1	126.41	125.91	126.91	0								0	0	0	0.1636	1	48276	48276		0	0	1				44890	10407	32817	33082	43815	43815					0.19606568976200833
RRRRRRRWKRT	11	Unmodified	_RRRRRRRWKRT_					0	0	0			REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF	REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	421.5733642578125	4	421.517628	1682.04141	-0.31984	-0.00013482	0.79349	0.00033447	0.47365	0.00019965	421.5172360843392	68.285	0.50879	68.285	67.955	68.463	0					16	9	2	0	0	0	1.0015	1	24677	24677		0	0	1	1999400	+		44891	23464	32818	33083	43816	43816					0.22766830901605317
RRRRRRWHWHW	11	Unmodified	_RRRRRRWHWHW_					0	0	0		ENST00000321582.9_1_9:124855435-124855555:-|nuORF	ENST00000321582.9_1_9:124855435-124855555:-|nuORF	ENST00000321582.9_1_9:124855435-124855555:-|nuORF	MSMS	A375_MHC_IP_R1	1	596.654052734375	3	596.664941	1786.97299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.087	1	77.087	76.587	77.587	0								0	0	0	0.16353	1	28116	28116		0.094841	0.094841	1				44892	10699	32819	33084	43817	43817					0.11098586321782022
RRRRRRWKRTY	11	Unmodified	_RRRRRRWKRTY_					0	0	0			REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF	REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	845.9081420898438	2	845.509089	1689.00362	-0.6885	-0.00058213	0.26749	0.00022616	-0.42101	-0.00035597	845.5088102604664	148.5	1.4147	148.5	147.85	149.26	0					67	30	3	0	0	0	0.73934	1	56817	56817		0	0	1	227060	+		44893	23464	32820	33085	43818	43818					0.18668319916150722
RRRRRRWKRTY	11	Unmodified	_RRRRRRWKRTY_					0	0	0			REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF	REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	564.4086303710938	3	564.008485	1689.00362	-0.77606	-0.0004377	0.71877	0.00040539	-0.057283	-3.2308E-05	564.0085588581785	148.58	1.5799	148.58	147.68	149.26	0					133	44	4	0	0	0	0.73934	1	56835	56835		0	0	1	507860	+		44894	23464	32820	33085	43819	43819					0.18668319916150722
RRRRRRWKRTY	11	Unmodified	_RRRRRRWKRTY_					0	0	0			REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF	REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	564.4080810546875	3	564.008485	1689.00362	-0.77606	-0.0004377	0.71877	0.00040539	-0.057283	-3.2308E-05	564.0085588581785	148.58	1.5799	148.58	147.68	149.26	0					133	44	4	0	0	0	1.0015	1	56816	56816		0	0	1	507860	+		44895	23464	32820	33085	43820	43820					0.18668319916150722
RRRRRRWKRTY	11	Unmodified	_RRRRRRWKRTY_					0	0	0			REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF	REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	564.4083251953125	3	564.008485	1689.00362	-0.30815	-0.0001738	0.29668	0.00016733	-0.011465	-6.4662E-06	564.0083335823502	148.58	1.5761	148.6	147.79	149.36	0.018692					121	43	4	0	0	0	1.0015	1	57551	57551		0	0	1	396490	+		44896	23464	32820	33085	43821	43821					0.18668319916150722
RRRRRRWKRTY	11	Unmodified	_RRRRRRWKRTY_					0	0	0			REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF	REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	845.509089	1689.00362	-0.6885	-0.00058213	0.26749	0.00022616	-0.42101	-0.00035597	845.5088102604664	148.5	1.4147	148.5	147.85	149.26	0	-0.035185	0.00023794	NaN	0	67	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227060	+		44897	23464	32820	33085							0.18668319916150722
RRRRRRWRRGE	11	Unmodified	_RRRRRRWRRGE_					0	0	0			REV__ENST00000492275.5_1_21:38445580-38480706:+|nuORF	REV__ENST00000492275.5_1_21:38445580-38480706:+|nuORF	MSMS	A375_MHC_IP_R1	1	820.8941650390625	2	820.488688	1638.96282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.41	1	143.41	142.91	143.91	0								0	0	0	0.1636	1	55015	55015		0	0	1		+		44898	23822	32821	33086	43822	43822					0.16889978596532274
RRRRRRWRRRR	11	Unmodified	_RRRRRRWRRRR_					0	0	0		ENST00000556735.1_1_14:51134724-51134856:-|nuORF;ENST00000510148.1_1_5:179921418-179921547:+|nuORF	REV__ENST00000510148.1_1_5:179921418-179921547:+|nuORF	REV__ENST00000510148.1_1_5:179921418-179921547:+|nuORF	MSMS	A375_MHC_IP_R1	1	883.558837890625	2	883.55777	1765.10099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.97	1	108.97	108.47	109.47	0								0	0	0	0.1636	1	39975	39975		0	0	1				44899	12895	32822	33087	43823	43823					0.24904146635640245
RRRRRRWRRRR	11	Unmodified	_RRRRRRWRRRR_					0	0	0		ENST00000556735.1_1_14:51134724-51134856:-|nuORF;ENST00000510148.1_1_5:179921418-179921547:+|nuORF	REV__ENST00000510148.1_1_5:179921418-179921547:+|nuORF	REV__ENST00000510148.1_1_5:179921418-179921547:+|nuORF	MSMS	A375_MHC_IP_R1	1	883.5582885742188	2	883.55777	1765.10099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.28	1	125.28	124.78	125.78	0								0	0	0	0.1636	1	47582	47582		0	0	1				44900	12895	32822	33087	43824	43824					0.24904146635640245
RRRRRSRHLPE	11	Unmodified	_RRRRRSRHLPE_					0	0	0		ENST00000372445.9_2_6:43445846-43466740:+|nuORF	ENST00000372445.9_2_6:43445846-43466740:+|nuORF	ENST00000372445.9_2_6:43445846-43466740:+|nuORF	MSMS	A375_MHC_IP_R2	2	759.9515991210938	2	759.951072	1517.88759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.775	1	19.378	18.878	19.878	0.60308								0	0	0	0.1636	1	5602	5602		0	0	1				44901	11200	32823	33088	43825	43825					0.14936376345463032
RRRRSARRTWP	11	Unmodified	_RRRRSARRTWP_					0	0	0		nc|ENSG00000105479|Q96M63-5|ODAD1;ENST00000474199.5_1_19:48800699-48823634:-|nuORF	nc|ENSG00000105479|Q96M63-5|ODAD1	nc|ENSG00000105479|Q96M63-5|ODAD1	MSMS	A375_MHC_IP_R1	1	500.0079345703125	3	499.962653	1496.86613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.58	1	133.58	133.08	134.08	0								0	0	0	0.16352	1	51510	51510		0.40827	0	1				44902	12399	32824	33089	43826	43826					0.13756991316722633
RRRRSRQRQRY	11	Unmodified	_RRRRSRQRQRY_					0	0	0			REV__ENSG00000175646|ENST00000312511|PRM1	REV__ENSG00000175646|ENST00000312511|PRM1	MULTI-SECPEP	A375_MHC_IP_R1	1	540.2271728515625	3	539.984228	1616.93085	-1.0001	-0.00054002	0.34804	0.00018794	-0.65203	-0.00035208	539.9843723064148	143.16	0.6561	143.16	142.59	143.24	0					18	12	2	0	0	0	1.0015	1	54941	54941		0	0	1	1309500	+		44903	21356	32825	33090	43827	43827					0.147065661227316
RRRRSRRQQLH	11	Unmodified	_RRRRSRRQQLH_					0	0	0			REV__ENST00000418710.2_1_7:20824815-20825286:-|nuORF	REV__ENST00000418710.2_1_7:20824815-20825286:-|nuORF	MSMS	A375_MHC_IP_R2	2	774.8475952148438	2	774.961972	1547.90939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.58	1	143.6	143.1	144.1	0.024414								0	0	0	0.1636	1	56107	56107		0	0	1		+		44904	24560	32826	33091	43828	43828					0.1573518109403267
RRRRSRWVWWS	11	Unmodified	_RRRRSRWVWWS_					0	0	0			REV__ENST00000262160.10_3_18:45423005-45423077:-|nuORF	REV__ENST00000262160.10_3_18:45423005-45423077:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	545.035888671875	3	544.302786	1629.88653	-0.28798	-0.00015675	-1.7686	-0.00096264	-2.0565	-0.0011194	544.6359344371282	49.692	0.55989	49.692	49.285	49.845	0					22	10	4	0	0	0	0.73891	1	17605	17605		0.40827	0.31342	1	3348800	+		44905	23199	32827	33092	43829	43829					0.09678161976535193
RRRRVRKRKH	10	Unmodified	_RRRRVRKRKH_					0	0	0		ENSG00000083168|ENST00000265713|KAT6A	ENSG00000083168|ENST00000265713|KAT6A	ENSG00000083168|ENST00000265713|KAT6A	MSMS	A375_MHC_IP_R2	2	724.5477294921875	2	724.474518	1446.93448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.59	1	118.2	117.7	118.7	0.60909								0	0	0	0.15628	1	44518	44518		0.45834	0	1				44906	1772	32828	33093	43830	43830					0.22889280687240898
RRRRVRLRLKR	11	Unmodified	_RRRRVRLRLKR_					0	0	0		ENST00000492897.3_1_17:46669706-46679621:+|nuORF	ENST00000492897.3_1_17:46669706-46679621:+|nuORF	ENST00000492897.3_1_17:46669706-46679621:+|nuORF	MSMS	A375_MHC_IP_R2	2	782.9027099609375	2	783.0322	1564.04985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.183	1	84.923	84.423	85.423	0.73962								0	0	0	0.1636	1	31998	31998		0	0	1				44907	12676	32829	33094	43831	43831					0.29038384818227314
RRRRVRRRKFR	11	Unmodified	_RRRRVRRRKFR_					0	0	0			REV__nc|ENSG00000203880|Q9NV79-3|PCMTD2	REV__nc|ENSG00000203880|Q9NV79-3|PCMTD2	MSMS	A375_MHC_IP_R2	2	548.0925903320312	3	548.024358	1641.05124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.878	1	81.622	81.122	82.122	0.74474								0	0	0	0.1636	1	30710	30710		0	0	1		+		44908	22474	32830	33095	43832	43832					0.25636018906971003
RRRRWVRLRRR	11	Unmodified	_RRRRWVRLRRR_					0	0	0		nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-7|DYSF;ENSG00000135636|ENST00000410020|DYSF;nc|ENSG00000135636|O75923-15|DYSF	nc|ENSG00000135636|O75923-3|DYSF	nc|ENSG00000135636|O75923-3|DYSF	MSMS	A375_MHC_IP_R1	1	555.6812744140625	3	556.024358	1665.05124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.296	1	23.296	22.796	23.796	0								0	0	0	0.1636	1	6371	6371		0	0	1				44909	4700	32831	33096	43833	43833					0.24532018906984376
RRRSFFRRIRG	11	Unmodified	_RRRSFFRRIRG_					0	0	0			REV__nc|ENSG00000147256|Q6ZRI8-5|ARHGAP36	REV__nc|ENSG00000147256|Q6ZRI8-5|ARHGAP36	MULTI-MSMS	A375_MHC_IP_R1	1	503.37042236328125	3	502.971148	1505.89161	-0.73009	-0.00036722	0.23425	0.00011782	-0.49584	-0.00024939	503.3057078267559	143.14	0.65642	143.14	142.69	143.34	0					35	12	4	0	0	0	0.73934	1	54877	54877		0	0	1	5414700	+		44910	19583	32832	33097	43834	43834					0.15890465839152057
RRRSFFRRIRG	11	Unmodified	_RRRSFFRRIRG_					0	0	0			REV__nc|ENSG00000147256|Q6ZRI8-5|ARHGAP36	REV__nc|ENSG00000147256|Q6ZRI8-5|ARHGAP36	MULTI-MSMS	A375_MHC_IP_R2	2	503.7055358886719	3	502.971148	1505.89161	-0.45541	-0.00022906	0.12332	6.2027E-05	-0.33209	-0.00016703	502.97094805962985	143.17	0.6588	143.2	142.79	143.45	0.030731					39	12	5	0	0	0	0.73934	1	55912	55912		0	0	1	4899800	+		44911	19583	32832	33097	43835	43835					0.15890465839152057
RRRSRKWRGLY	11	Unmodified	_RRRSRKWRGLY_					0	0	0		ENST00000403909.2_1_6:139660476-139660551:+|nuORF	ENST00000403909.2_1_6:139660476-139660551:+|nuORF	ENST00000403909.2_1_6:139660476-139660551:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	768.189697265625	2	767.452917	1532.89128	-0.83734	-0.00064262	0.19677	0.00015101	-0.64057	-0.00049161	767.4530001926091	143.17	0.75659	143.17	142.64	143.39	0					50	14	5	0	0	0	0.73897	1	54803	54803		0.35063	0	1	13470000			44912	11579	32833	33098	43836	43836					0.14615046119297403
RRRSRKWRGLY	11	Unmodified	_RRRSRKWRGLY_					0	0	0		ENST00000403909.2_1_6:139660476-139660551:+|nuORF	ENST00000403909.2_1_6:139660476-139660551:+|nuORF	ENST00000403909.2_1_6:139660476-139660551:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	767.85595703125	2	767.452917	1532.89128	-0.73172	-0.00056156	0.28842	0.00022135	-0.4433	-0.00034021	767.4530893865681	143.18	0.80891	143.22	142.69	143.5	0.030731					46	15	5	0	0	0	0.73897	1	55850	55850		0.35063	0	1	12394000			44913	11579	32833	33098	43837	43837					0.14615046119297403
RRRSWEWSFR	10	Unmodified	_RRRSWEWSFR_					0	0	0			REV__ENST00000429642.1_3_10:1094229-1094346:-|nuORF	REV__ENST00000429642.1_3_10:1094229-1094346:-|nuORF	MSMS	A375_MHC_IP_R1	1	733.1748046875	2	733.381626	1464.7487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.38	1	137.38	136.88	137.88	0								0	0	0	0.15596	1	52883	52883		1.4819	0.15237	1		+		44914	24690	32834	33099	43838	43838					0.03491413657252451
RRRTERVRREK	11	Unmodified	_RRRTERVRREK_					0	0	0		ENSG00000155330|ENST00000285697|C16orf87	ENSG00000155330|ENST00000285697|C16orf87	ENSG00000155330|ENST00000285697|C16orf87	MSMS	A375_MHC_IP_R2	2	771.0045166015625	2	771.464013	1540.91347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.26	1	105.02	104.52	105.52	0.76308								0	0	0	0.16355	1	39452	39452		0.26902	0	1				44915	6138	32835	33100	43839	43839					0.1646522579703742
RRRTRKRLNPE	11	Unmodified	_RRRTRKRLNPE_					0	0	0		nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;ENSG00000104447|ENST00000395715|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	MSMS	A375_MHC_IP_R2	2	741.515380859375	2	741.447831	1480.88111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.68	1	142.71	142.21	143.21	0.030731								0	0	0	0.16354	1	55777	55777		0.30703	0	1				44916	2514	32836	33101	43840	43840					0.15990438394055673
RRRVRPQASLT	11	Unmodified	_RRRVRPQASLT_					0	0	0		HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant;ENSG00000128731|ENST00000261609|HERC2	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	447.4990539550781	3	447.272493	1338.79565	-0.44258	-0.00019795	0.65246	0.00029183	0.20988	9.3873E-05	447.27277498786384	140.91	1.1343	140.91	140.44	141.58	0					24	21	2	0	0	0	0.73886	1	54115	54115		0.45452	0	1	612690			44917	14109	32837	33102	43841	43841					0.13980273208426297
RRRVRRRPGRA	11	Unmodified	_RRRVRRRPGRA_					0	0	0			REV__ENST00000575334.5_3_16:4463394-4466616:-|nuORF	REV__ENST00000575334.5_3_16:4463394-4466616:-|nuORF	MSMS	A375_MHC_IP_R1	1	718.8404541015625	2	718.456325	1434.8981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.74	1	144.74	144.24	145.24	0								0	0	0	0.1636	1	55499	55499		0	0	1		+		44918	26303	32838	33103	43842	43842					0.1980440379054471
RRRWFRTHTPR	11	Unmodified	_RRRWFRTHTPR_					0	0	0		ENST00000574110.5_1_19:30433210-30433438:+|nuORF	ENST00000574110.5_1_19:30433210-30433438:+|nuORF	ENST00000574110.5_1_19:30433210-30433438:+|nuORF	MSMS	A375_MHC_IP_R1	1	784.9899291992188	2	784.942716	1567.87088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.647	1	91.647	91.147	92.147	0								0	0	0	0.16339	1	33673	33673		1.0715	0.72083	1				44919	13628	32839	33104	43843	43843					0.10965875459487506
RRRWRQRRRWP	11	Unmodified	_RRRWRQRRRWP_					0	0	0			REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF	REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF	MSMS	A375_MHC_IP_R2	2	854.888427734375	2	855.001431	1707.98831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.9	1	123.28	122.78	123.78	0.3766								0	0	0	0.1636	1	47163	47163		0	0	1		+		44920	24072	32840	33105	43844	43844					0.16263453118949656
RRRWVRRHLL	10	Unmodified	_RRRWVRRHLL_					0	0	0			REV__ENST00000426174.6_1_12:124171384-124171462:+|nuORF	REV__ENST00000426174.6_1_12:124171384-124171462:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	483.70379638671875	3	483.304239	1446.89089	-0.6741	-0.0003258	0.068219	3.2971E-05	-0.60588	-0.00029283	483.30417598452476	148.97	2.6612	148.97	147.34	150	0					376	116	5	0	0	0	0.72747	6	56359	56359;56443;56538;56743;56956;57134		0.15932	0.15932	1	2936400	+		44921	24644	32841	33106	43845;43846;43847;43848;43849;43850	43845					0.1853167119011232
RRRWVRRHLL	10	Unmodified	_RRRWVRRHLL_					0	0	0			REV__ENST00000426174.6_1_12:124171384-124171462:+|nuORF	REV__ENST00000426174.6_1_12:124171384-124171462:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	482.7082824707031	3	483.304239	1446.89089	-0.6741	-0.0003258	0.068219	3.2971E-05	-0.60588	-0.00029283	483.30417598452476	148.97	2.6612	148.97	147.34	150	0					376	116	5	0	0	0	0.95069	1	57151	57151		0	0	1	2936400	+		44922	24644	32841	33106	43851	43851					0.1853167119011232
RRRWWWLQRRQ	11	Unmodified	_RRRWWWLQRRQ_					0	0	0		ENST00000591247.5_1_17:42113394-42113565:-|nuORF;LSM12|p.V173Gfs*85|1|0.36|ENSG00000161654|chr17:44036278-44036278|A/-|frameshift_variant	ENST00000591247.5_1_17:42113394-42113565:-|nuORF	ENST00000591247.5_1_17:42113394-42113565:-|nuORF	MSMS	A375_MHC_IP_R2	2	863.9849243164062	2	863.984915	1725.95528	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.03	1	77.773	77.273	78.273	0.74293								0	0	0	0.1636	1	29248	29248		0	0	1				44923	13793	32842	33107	43852	43852					0.121338262762265
RRRYLRRKER	10	Unmodified	_RRRYLRRKER_					0	0	0		ENSG00000284188|ENST00000640271|unknown	ENSG00000284188|ENST00000640271|unknown	ENSG00000284188|ENST00000640271|unknown	MULTI-SECPEP	A375_MHC_IP_R2	2	745.35791015625	2	744.958366	1487.90218	-0.66443	-0.00049497	0.067105	4.9991E-05	-0.59732	-0.00044498	744.958243407126	138.39	0.25369	138.48	138.37	138.62	0.083969					5	4	2	0	0	0	0.95069	1	54289	54289		0	0	1	1008800			44924	10053	32843	33108	43853	43853					0.17774448493582895
RRRYSRSVL	9	Unmodified	_RRRYSRSVL_					0	0	0			REV__nc|ENSG00000050628|P43115-2|PTGER3;REV__nc|ENSG00000050628|P43115-4|PTGER3	REV__nc|ENSG00000050628|P43115-2|PTGER3	MULTI-MSMS	A375_MHC_IP_R1	1	398.2817687988281	3	398.2389	1191.69487	-0.087854	-3.4987E-05	0.42904	0.00017086	0.34119	0.00013587	398.2389744082093	62.212	0.71749	62.212	61.891	62.609	0					27	13	3	0	0	0	0.6656	1	22410	22410		6.6304	6.6304	1	3636600	+		44925	27103;27104	32844	33109	43854	43854					0.10669241225559745
RRRYSRSVL	9	Unmodified	_RRRYSRSVL_					0	0	0			REV__nc|ENSG00000050628|P43115-2|PTGER3;REV__nc|ENSG00000050628|P43115-4|PTGER3	REV__nc|ENSG00000050628|P43115-2|PTGER3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	398.2389	1191.69487	-0.39401	-0.00015691	0.35795	0.00014255	-0.036059	-1.436E-05	398.23903674196123	61.271	0.7057	62.016	61.566	62.272	0.74503	-0.098151	-4.1174E-05	NaN	6.6304	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4883600	+		44926	27103;27104	32844	33109							0.10669241225559745
RRSLMRIRWRF	11	Unmodified	_RRSLMRIRWRF_					0	0	0			REV__chr14:102233789-102234530|145|11.86|0.07|7.42|-|0|TE_info:HERVFH21-int,HERVFH21-int_dup103,ERV1,LTR,donor,+,102234530,102239533|MOK,None|91	REV__chr14:102233789-102234530|145|11.86|0.07|7.42|-|0|TE_info:HERVFH21-int,HERVFH21-int_dup103,ERV1,LTR,donor,+,102234530,102239533|MOK,None|91	MULTI-MSMS	A375_MHC_IP_R1	1	526.6753540039062	3	526.308772	1575.90449	-0.54348	-0.00028604	-3.1105	-0.0016371	-3.654	-0.0019231	526.3071638040727	80.046	0.30846	80.046	79.828	80.136	0					6	5	2	0	0	0	0.73886	1	29217	29217		0.45452	0.35968	1	1374000	+		44927	15701	32845	33110	43855	43855					0.13957160907011712
RRSMKRRRRRR	11	Unmodified	_RRSMKRRRRRR_					0	0	0		ENSG00000253276|ENST00000523505|CCDC71L;nc|ENSG00000253276|Q8N9Z2-2|CCDC71L	ENSG00000253276|ENST00000523505|CCDC71L	ENSG00000253276|ENST00000523505|CCDC71L	MSMS	A375_MHC_IP_R1	1	807.548828125	2	807.500741	1612.98693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.67	1	118.67	118.17	119.17	0								0	0	0	0.1636	1	43759	43759		0	0	1				44928	9857	32846	33111	43856	43856					0.20495495758541438
RRSMKRRRRRR	11	Unmodified	_RRSMKRRRRRR_					0	0	0		ENSG00000253276|ENST00000523505|CCDC71L;nc|ENSG00000253276|Q8N9Z2-2|CCDC71L	ENSG00000253276|ENST00000523505|CCDC71L	ENSG00000253276|ENST00000523505|CCDC71L	MSMS	A375_MHC_IP_R2	2	807.5009155273438	2	807.500741	1612.98693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.2551	1	2.7141	2.2141	3.2141	0.45901								0	0	0	0.1636	1	732	732		0	0	1				44929	9857	32846	33111	43857	43857					0.20495495758541438
RRSMKRRRRRR	11	Unmodified	_RRSMKRRRRRR_					0	0	0		ENSG00000253276|ENST00000523505|CCDC71L;nc|ENSG00000253276|Q8N9Z2-2|CCDC71L	ENSG00000253276|ENST00000523505|CCDC71L	ENSG00000253276|ENST00000523505|CCDC71L	MSMS	A375_MHC_IP_R2	2	807.5014038085938	2	807.500741	1612.98693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.3321	1	3.7679	3.2679	4.2679	0.43585								0	0	0	0.1636	1	1082	1082		0	0	1				44930	9857	32846	33111	43858	43858					0.20495495758541438
RRSPFLQVF	9	Unmodified	_RRSPFLQVF_					0	0	0		SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant;ENSG00000101310|ENST00000650089|SEC23B	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	384.2889099121094	3	383.889097	1148.64546	0.3563	0.00013678	-0.25683	-9.8593E-05	0.099469	3.8185E-05	383.888972542987	72.888	0.81151	72.888	72.524	73.336	0					47	15	4	0	0	0	0.69179	1	26481	26481		21.59	8.7175	1	14916000			44931	2280	32847	33112	43859	43859					0.07708533216759861
RRSPFLQVF	9	Unmodified	_RRSPFLQVF_					0	0	0		SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant;ENSG00000101310|ENST00000650089|SEC23B	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	575.7297973632812	2	575.330008	1148.64546	-0.12851	-7.3937E-05	-0.44896	-0.0002583	-0.57747	-0.00033224	575.3298683242649	72.91	0.91299	72.91	72.575	73.488	0					31	17	3	0	0	0	0.38134	1	26504	26504		57.722	25.416	1	5780400			44932	2280	32847	33112	43860	43860					0.07708533216759861
RRSPFLQVF	9	Unmodified	_RRSPFLQVF_					0	0	0		SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant;ENSG00000101310|ENST00000650089|SEC23B	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	384.2889709472656	3	383.889097	1148.64546	-0.40595	-0.00015584	0.11178	4.2911E-05	-0.29417	-0.00011293	383.88911811720857	71.752	0.86031	72.486	72.111	72.971	0.73421					51	16	4	0	0	0	0.55534	1	27182	27182		26.021	8.5781	1	16810000			44933	2280	32847	33112	43861	43861					0.07708533216759861
RRSQQFKKQE	10	Unmodified	_RRSQQFKKQE_					0	0	0			REV__nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1	REV__nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1	MSMS	A375_MHC_IP_R2	2	445.6303405761719	3	445.581103	1333.72148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.133	1	24.776	24.276	25.276	0.64368								0	0	0	0.15622	1	7879	7879		0.62683	0.12087	1		+		44934	21090	32848	33113	43862	43862					0.06796885326252777
RRSVSLTKA	9	Unmodified	_RRSVSLTKA_					0	0	0			REV__nc|ENSG00000100014|Q69YQ0-2|SPECC1L	REV__nc|ENSG00000100014|Q69YQ0-2|SPECC1L	MULTI-MSMS	A375_MHC_IP_R1	1	509.71185302734375	2	509.311815	1016.60908	-0.63976	-0.00032584	0.53683	0.00027342	-0.10293	-5.2422E-05	509.3119812069256	130.08	0.45848	130.08	129.9	130.36	0					16	8	3	0	0	0	0.65721	1	50063	50063		10.824	0.75	1	23639000	+		44935	17041	32849	33114	43863	43863					0.10143656320042282
RRSVSLTKA	9	Unmodified	_RRSVSLTKA_					0	0	0			REV__nc|ENSG00000100014|Q69YQ0-2|SPECC1L	REV__nc|ENSG00000100014|Q69YQ0-2|SPECC1L	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	509.311815	1016.60908	-0.63976	-0.00032584	0.53683	0.00027342	-0.10293	-5.2422E-05	509.3119812069256	130.08	0.45848	130.08	129.9	130.36	0	0.00555	0.0002455	NaN	10.824	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23639000	+		44936	17041	32849	33114							0.10143656320042282
RRSVSLTKA	9	Unmodified	_RRSVSLTKA_					0	0	0			REV__nc|ENSG00000100014|Q69YQ0-2|SPECC1L	REV__nc|ENSG00000100014|Q69YQ0-2|SPECC1L	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	509.311815	1016.60908	-0.77156	-0.00039297	0.11482	5.8477E-05	-0.65675	-0.00033449	509.31181033044555	129.86	0.60826	130.07	129.89	130.5	0.2142	-0.00555	-0.00018438	NaN	10.824	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9909100	+		44937	17041	32849	33114							0.10143656320042282
RRSYWRHLRRL	11	Unmodified	_RRSYWRHLRRL_					0	0	0		ENSG00000258429|ENST00000288022|PDF	ENSG00000258429|ENST00000288022|PDF	ENSG00000258429|ENST00000288022|PDF	MSMS	A375_MHC_IP_R2	2	533.6714477539062	3	533.646553	1597.91783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.753	1	62.496	61.996	62.996	0.74263								0	0	0	0.16352	1	23407	23407		0.40827	0	1				44938	9917	32850	33115	43864	43864					0.14278735010611854
RRTKKRGGEE	10	Unmodified	_RRTKKRGGEE_					0	0	0			REV__ENST00000235307.6_1_1:184356213-184476760:+|nuORF	REV__ENST00000235307.6_1_1:184356213-184476760:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	608.715576171875	2	608.847084	1215.67962	-0.49715	-0.00030269	0.49349	0.00030046	-0.0036598	-2.2283E-06	608.8469589787177	128.83	1.8722	129.07	128.6	130.48	0.23946					77	36	3	0	0	0	0.94102	1	50526	50526		5.7319	5.7319	1	23829000	+		44939	23086	32851	33116	43865	43865					0.08040329637719879
RRTKKRGGEE	10	Unmodified	_RRTKKRGGEE_					0	0	0			REV__ENST00000235307.6_1_1:184356213-184476760:+|nuORF	REV__ENST00000235307.6_1_1:184356213-184476760:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	608.847084	1215.67962	-0.45256	-0.00027554	0.34582	0.00021055	-0.10674	-6.4989E-05	608.8470508477109	129.12	1.7794	129.12	128.48	130.26	0	0.024904	-0.00011578	NaN	5.7319	74	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41048000	+		44940	23086	32851	33116							0.08040329637719879
RRTPAPGA	8	Unmodified	_RRTPAPGA_					0	0	0			REV__ENST00000353676.9_1_17:27044340-27045183:-|nuORF	REV__ENST00000353676.9_1_17:27044340-27045183:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	413.6383056640625	2	413.238119	824.461684	0.042849	1.7707E-05	0.14644	6.0515E-05	0.18929	7.8222E-05	413.2380822109322	98.042	4.3213	98.802	97.169	101.49	0.75977					145	84	3	0	0	0	0.7779	1	37191	37191		2.5775	0	1	9036200	+		44941	23805	32852	33117	43866	43866					0.04243184505901354
RRTQRLLMKIL	11	Unmodified	_RRTQRLLMKIL_					0	0	0			REV__ENSG00000013503|ENST00000228347|POLR3B	REV__ENSG00000013503|ENST00000228347|POLR3B	MSMS	A375_MHC_IP_R2	2	476.5983581542969	3	476.637896	1426.89186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.544	1	88.276	87.776	88.776	0.7318								0	0	0	0.16332	1	33296	33296		1.4551	0	1		+		44942	16235	32853	33118	43867	43867					0.19548704724138588
RRTREFRSP	9	Unmodified	_RRTREFRSP_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	MULTI-SECPEP	A375_MHC_IP_R1	1	401.5971374511719	3	402.226772	1203.65849	-0.24348	-9.7932E-05	1.3524	0.00054399	1.109	0.00044605	402.22581342172407	20.551	0.25386	20.551	20.384	20.638	0					9	4	3	0	0	0	0.80535	1	5299	5299		2.2828	0	1	586230			44943	9013	32854	33119	43868	43868					0.06480364328831456
RRTRLILFV	9	Unmodified	_RRTRLILFV_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;ENST00000463270.1_1_10:27418274-27425210:-|nuORF	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-SECPEP	A375_MHC_IP_R2	2	392.323974609375	3	391.924142	1172.7506	-0.12194	-4.7792E-05	0.1363	5.3419E-05	0.014358	5.6273E-06	391.92418988205145	63.678	1.3241	64.418	64.088	65.412	0.74022					60	25	4	0	0	0	0.51395	1	24085	24085		29.437	7.847	1	48056000			44944	4815	32855	33120	43869	43869					0.1711307441316876
RRTRLPHHRYQ	11	Unmodified	_RRTRLPHHRYQ_					0	0	0			REV__ENSG00000167771|ENST00000301459|RCOR2	REV__ENSG00000167771|ENST00000301459|RCOR2	MULTI-MSMS	A375_MHC_IP_R1	1	760.8270874023438	2	760.426899	1518.83924	-0.43761	-0.00033277	0.74665	0.00056777	0.30904	0.000235	760.4274825990809	101.93	0.7079	101.93	101.55	102.25	0					39	13	4	0	0	0	0.73016	1	37419	37419		8.7454	8.7454	1	11703000	+		44945	20793	32856	33121	43870	43870					0.10057882705541488
RRTSRRKRA	9	Unmodified	_RRTSRRKRA_					0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	MSMS	A375_MHC_IP_R2	2	396.1643371582031	3	396.249911	1185.7279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.901	1	70.636	70.136	71.136	0.73421								0	0	0	0.15486	1	26497	26497		4.5289	1.2092	1				44946	866	32857	33122	43871	43871					0.1424686806826685
RRVENVFK	8	Unmodified	_RRVENVFK_					0	0	0			REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-SECPEP	A375_MHC_IP_R1	1	523.70458984375	2	524.306532	1046.59851	-0.11759	-6.1652E-05	-0.37176	-0.00019492	-0.48935	-0.00025657	524.3060725904188	127.44	0.65868	127.44	127.06	127.72	0					21	12	3	0	0	0	0.972	1	48824	48824		4.756	2.9118	1	8290000	+		44947	16308	32858	33123	43872	43872					0.07707673665595394
RRVHKNLIPQ	10	Unmodified	_RRVHKNLIPQ_					0	0	0		ENST00000454201.5_1_3:50363554-50364527:-|nuORF;ENST00000421918.1_1_3:50363554-50364574:-|nuORF;ENSG00000114383|ENST00000232496|TUSC2;ENST00000462137.5_1_3:50357741-50365530:-|nuORF	ENST00000454201.5_1_3:50363554-50364527:-|nuORF	ENST00000454201.5_1_3:50363554-50364527:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	631.5355834960938	2	630.886013	1259.75747	-0.98868	-0.00062375	1.6119	0.0010169	0.62324	0.00039319	631.8917181194939	146.54	0.20126	146.54	146.38	146.58	0					30	18	3	0	0	0	0.95034	1	56023	56023		0.40072	0	1	141360			44948	3216	32859	33124	43873	43873					0.1379838729376388
RRVKRRKV	8	Unmodified	_RRVKRRKV_					0	0	0			REV__ENST00000458591.6_2_14:31204849-31204942:+|nuORF	REV__ENST00000458591.6_2_14:31204849-31204942:+|nuORF	MSMS	A375_MHC_IP_R1	1	549.7246704101562	2	549.378158	1096.74176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.43	1	145.43	144.93	145.93	0								0	0	0	0.16876	1	55741	55741		0.79363	0	1		+		44949	24950	32860	33125	43874	43874					0.19726145567346975
RRVPRAERG	9	Unmodified	_RRVPRAERG_					0	0	0		ENST00000291442.3_1_19:17351565-17356474:-|nuORF	ENST00000291442.3_1_19:17351565-17356474:-|nuORF	ENST00000291442.3_1_19:17351565-17356474:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	366.6049499511719	3	366.219729	1095.63736	0.093342	3.4184E-05	0.76558	0.00028037	0.85893	0.00031456	366.2200554342563	27.229	0.61307	27.907	27.587	28.2	0.67857					21	11	3	0	0	0	0.38603	1	9219	9219		23.79	7.2239	1	3745700			44950	10473	32861	33126	43875	43875					0.0933639901998049
RRVRLLIF	8	Unmodified	_RRVRLLIF_					0	0	0			REV__nc|ENSG00000130202|Q92692-2|NECTIN2	REV__nc|ENSG00000130202|Q92692-2|NECTIN2	MSMS	A375_MHC_IP_R1	1	536.8969116210938	2	536.858735	1071.70292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.812	1	78.812	78.312	79.312	0								0	0	0	0.16876	1	28764	28764		0.79363	0	1		+		44951	27219	32862	33127	43876	43876					0.16993420212975252
RRVRQRRHARL	11	Unmodified	_RRVRQRRHARL_					0	0	0			REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	502.38214111328125	3	501.982047	1502.92431	-0.42884	-0.00021527	0.55538	0.00027879	0.12654	6.352E-05	501.9823072063354	149.17	1.8318	149.18	148.11	149.94	0.018692					117	61	4	0	0	0	0.73934	2	57704	57704;57911		0	0	1	519310	+		44952	23571	32863	33128	43877;43878	43877					0.19296672962013872
RRVRQRRHARL	11	Unmodified	_RRVRQRRHARL_					0	0	0			REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	501.982047	1502.92431	-0.73159	-0.00036725	0.86926	0.00043635	0.13767	6.9107E-05	501.98245565942926	149.06	1.6405	149.06	148.11	149.75	0	-0.062217	0.00024816	NaN	0	93	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	535800	+		44953	23571	32863	33128							0.19296672962013872
RRVRQRRHARL	11	Unmodified	_RRVRQRRHARL_					0	0	0			REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	501.982047	1502.92431	-0.42884	-0.00021527	0.55538	0.00027879	0.12654	6.352E-05	501.9823072063354	149.17	1.8318	149.18	148.11	149.94	0.018692	0.062217	-0.00022453	NaN	0	117	61	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	519310	+		44954	23571	32863	33128							0.19296672962013872
RRWCWRWPWRT	11	Unmodified	_RRWCWRWPWRT_					0	0	0		nc|ENSG00000127252|Q9HDD0-2|PLAAT1	nc|ENSG00000127252|Q9HDD0-2|PLAAT1	nc|ENSG00000127252|Q9HDD0-2|PLAAT1	MSMS	A375_MHC_IP_R2	2	563.4563598632812	3	563.621239	1687.84189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.73	1	23.36	22.86	23.86	0.63014								0	0	0	0.1636	1	7237	7237		0	0	1				44955	14585	32864	33129	43879	43879					0.02548014838839663
RRWFLWRRRRR	11	Unmodified	_RRWFLWRRRRR_					0	0	0		ENST00000368742.3_1_1:153234210-153234426:+|nuORF	ENST00000368742.3_1_1:153234210-153234426:+|nuORF	ENST00000368742.3_1_1:153234210-153234426:+|nuORF	MSMS	A375_MHC_IP_R2	2	872.7532958984375	2	872.521999	1743.02945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.13	1	130.34	129.84	130.84	0.2142								0	0	0	0.1636	1	51143	51143		0	0	1				44956	11122	32865	33130	43880	43880					0.1876521415838397
RRWGRRRQWRW	11	Unmodified	_RRWGRRRQWRW_					0	0	0			REV__ENST00000513117.1_1_5:6633573-6668378:+|nuORF	REV__ENST00000513117.1_1_5:6633573-6668378:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	567.2454833984375	3	566.98568	1697.93521	-0.37324	-0.00021162	0.76853	0.00043574	0.39529	0.00022412	566.985962455692	73.995	0.30354	73.995	73.843	74.146	0					7	5	2	0	0	0	1.0015	1	26978	26978		0	0	1	1197400	+		44957	25635	32866	33131	43881	43881					0.11416075336273934
RRWGVRRQRR	10	Unmodified	_RRWGVRRQRR_					0	0	0		ENST00000476898.1_1_X:56258986-56259160:+|nuORF	ENST00000476898.1_1_X:56258986-56259160:+|nuORF	ENST00000476898.1_1_X:56258986-56259160:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	476.3558044433594	3	475.955609	1424.845	-0.34022	-0.00016193	0.43631	0.00020766	0.096093	4.5736E-05	475.95588069709385	148.84	1.9418	148.86	147.92	149.87	0.018707					100	59	2	0	0	0	0.72658	1	57865	57865		0.13989	0.13989	1	176940			44958	12434	32867	33132	43882	43882					0.14957026007846252
RRWGWEWRRKR	11	Unmodified	_RRWGWEWRRKR_					0	0	0			REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF	REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF	MSMS	A375_MHC_IP_R2	2	836.4603881835938	2	836.463816	1670.91308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.55	1	122.93	122.43	123.43	0.3766								0	0	0	0.1636	1	46981	46981		0	0	1		+		44959	24934	32868	33133	43883	43883					0.1044585086783627
RRWHRWLPGRK	11	Unmodified	_RRWHRWLPGRK_					0	0	0			REV__nc|ENSG00000168907|Q68DD2-2|PLA2G4F	REV__nc|ENSG00000168907|Q68DD2-2|PLA2G4F	MSMS	A375_MHC_IP_R2	2	516.7101440429688	3	516.635877	1546.8858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.95	1	132.14	131.64	132.64	0.18953								0	0	0	0.16334	1	51906	51906		1.3296	0.82369	1		+		44960	20894	32869	33134	43884	43884					0.13423367327459346
RRWKALRQKFW	11	Unmodified	_RRWKALRQKFW_					0	0	0			REV__ENST00000554144.5_1_4:57514888-57516908:-|nuORF	REV__ENST00000554144.5_1_4:57514888-57516908:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	525.709228515625	3	525.644149	1573.91062	-0.79693	-0.0004189	-0.1118	-5.8765E-05	-0.90873	-0.00047767	525.6441067784408	137.42	1.6862	137.42	137.13	138.81	0					51	32	2	0	0	0	0.73934	1	52953	52953		0	0	1	2460900	+		44961	21068	32870	33135	43885	43885					0.14662002410159403
RRWKQLFRRLF	11	Unmodified	_RRWKQLFRRLF_					0	0	0			REV__ENST00000380276.6_1_21:44515606-44515841:-|nuORF	REV__ENST00000380276.6_1_21:44515606-44515841:-|nuORF	MSMS	A375_MHC_IP_R1	1	536.0056762695312	3	535.991549	1604.95282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.105	1	81.105	80.605	81.605	0								0	0	0	0.16358	1	29635	29635		0.094841	0.094841	1		+		44962	24212	32871	33136	43886	43886					0.17453977818558997
RRWNKYFKSRR	11	Unmodified	_RRWNKYFKSRR_					0	0	0		ENSG00000127774|ENST00000248378|EMC6	ENSG00000127774|ENST00000248378|EMC6	ENSG00000127774|ENST00000248378|EMC6	MSMS	A375_MHC_IP_R1	1	798.8525390625	2	798.95275	1595.89095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.93	1	133.93	133.43	134.43	0								0	0	0	0.16354	1	51648	51648		0.30703	0	1				44963	4103	32872	33137	43887	43887					0.11683626399417335
RRWPWRELAGA	11	Unmodified	_RRWPWRELAGA_					0	0	0			REV__ENST00000477755.1_1_1:10490858-10491098:+|nuORF	REV__ENST00000477755.1_1_1:10490858-10491098:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	467.3232727050781	3	466.589822	1396.74764	-0.66849	-0.00031191	-0.82267	-0.00038385	-1.4912	-0.00069576	466.58946165746863	67.995	0.65653	67.995	67.654	68.31	0					36	12	4	0	0	0	0.9574	1	24619	24619		11.631	2.3876	1	9924700	+		44964	25200	32873	33138	43888	43888					0.06513199288383476
RRWRKKRRKEA	11	Unmodified	_RRWRKKRRKEA_					0	0	0		nc|ENSG00000290320|P0DW85|H2BN1	nc|ENSG00000290320|P0DW85|H2BN1	nc|ENSG00000290320|P0DW85|H2BN1	MSMS	A375_MHC_IP_R1	1	785.39208984375	2	785.487291	1568.96003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.73	1	115.73	115.23	116.23	0								0	0	0	0.16355	1	42446	42446		0.26902	0.26902	1				44965	14953	32874	33139	43889	43889					0.19830710418978015
RRWRNIVDQIW	11	Unmodified	_RRWRNIVDQIW_					0	0	0		nc|ENSG00000140598|Q7Z2Z2-2|EFL1;ENSG00000140598|ENST00000268206|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	MULTI-SECPEP	A375_MHC_IP_R2	2	515.1553955078125	3	514.619781	1540.83751	-0.81343	-0.00041861	-0.26088	-0.00013425	-1.0743	-0.00055286	514.9539080753926	65.07	0.35572	65.808	65.562	65.917	0.73811					13	6	3	0	0	0	1.0004	1	24663	24663		2.6312	2.6312	1	1478900			44966	5173	32875	33140	43890	43890					0.0887282889693779
RRWRPLRLRR	10	Unmodified	_RRWRPLRLRR_					0	0	0		ENST00000421814.6_1_5:162932622-162940637:+|nuORF	ENST00000421814.6_1_5:162932622-162940637:+|nuORF	ENST00000421814.6_1_5:162932622-162940637:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	733.3657836914062	2	732.965994	1463.91744	-0.90311	-0.00066195	0.19741	0.00014469	-0.7057	-0.00051726	732.9659428583782	148.98	2.6075	148.98	147.4	150	0					316	110	5	0	0	0	0.72747	6	56489	56489;56701;56900;57043;57086;57206		0	0	1	3897700			44967	11741	32876	33141	43891;43892;43893;43894;43895;43896	43891					0.2040336008142276
RRWRQRRRWPY	11	Unmodified	_RRWRQRRRWPY_					0	0	0			REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF	REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	572.6878051757812	3	572.657452	1714.95053	-0.45061	-0.00025805	0.54591	0.00031262	0.095293	5.457E-05	572.6578220973227	84.52	0.35534	84.52	84.292	84.647	0					10	6	3	0	0	0	0.73881	1	30984	30984		0.50596	0.50596	1	1537900	+		44968	24072	32877	33142	43897	43897					0.1216494213349506
RRWRQRRRWPY	11	Unmodified	_RRWRQRRRWPY_					0	0	0			REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF	REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	572.68603515625	3	572.657452	1714.95053	-0.20678	-0.00011841	1.8203	0.0010424	1.6135	0.00092398	572.6575828805222	83.717	0.30573	84.456	84.305	84.611	0.73962					8	5	2	0	0	0	0.73881	1	31824	31824		0.50596	0.50596	1	1087900	+		44969	24072	32877	33142	43898	43898					0.1216494213349506
RRWRQRRRWPY	11	Unmodified	_RRWRQRRRWPY_					0	0	0			REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF	REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	572.657452	1714.95053	-0.45061	-0.00025805	0.54591	0.00031262	0.095293	5.457E-05	572.6578220973227	84.52	0.35534	84.52	84.292	84.647	0	0.031853	-0.000154	NaN	0.50596	10	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1537900	+		44970	24072	32877	33142							0.1216494213349506
RRWRQRRRWPY	11	Unmodified	_RRWRQRRRWPY_					0	0	0			REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF	REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	572.657452	1714.95053	-0.20678	-0.00011841	1.8203	0.0010424	1.6135	0.00092398	572.6575828805222	83.717	0.30573	84.456	84.305	84.611	0.73962	-0.031853	0.0020353	NaN	0.50596	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1087900	+		44971	24072	32877	33142							0.1216494213349506
RRWRRRRDRAH	11	Unmodified	_RRWRRRRDRAH_					0	0	0		ENST00000425427.6_1_5:153570544-153674427:+|nuORF	ENST00000425427.6_1_5:153570544-153674427:+|nuORF	ENST00000425427.6_1_5:153570544-153674427:+|nuORF	MSMS	A375_MHC_IP_R1	1	811.0185546875	2	810.967588	1619.92062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.46	1	125.46	124.96	125.96	0								0	0	0	0.16302	1	47755	47755		2.9952	2.7262	1				44972	11789	32878	33143	43899	43899					0.13546003188139366
RRWRYWEYWSW	11	Unmodified	_RRWRYWEYWSW_					0	0	0		ENST00000299314.11_1_12:102159966-102161843:-|nuORF	ENST00000299314.11_1_12:102159966-102161843:-|nuORF	ENST00000299314.11_1_12:102159966-102161843:-|nuORF	MSMS	A375_MHC_IP_R1	1	591.53759765625	3	591.951419	1772.83243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.77	1	122.77	122.27	123.27	0								0	0	0	0.1636	1	45749	45749		0	0	1				44973	10527	32879	33144	43900	43900					-0.023074749656871063
RRWSCRWWPWR	11	Unmodified	_RRWSCRWWPWR_					0	0	0			REV__chr7:102441950-102446513|111|10.41|0.15|6.09|+|1|None,ORAI2|1	REV__chr7:102441950-102446513|111|10.41|0.15|6.09|+|1|None,ORAI2|1	MULTI-SECPEP	A375_MHC_IP_R1	1	837.6722412109375	2	837.920395	1673.82624	-0.084514	-7.0816E-05	-3.4671	-0.0029052	-3.5516	-0.002976	838.417607122746	116.93	0.30596	116.93	116.75	117.06	0					7	5	2	0	0	0	1.0008	1	42907	42907		0.30703	0	1	3929500	+		44974	15769	32880	33145	43901	43901					0.016277283217732474
RRWVRALRRSP	11	Unmodified	_RRWVRALRRSP_					0	0	0		ENST00000574916.1_1_17:685618-686569:+|nuORF;ENSG00000171861|ENST00000304478|MRM3	ENST00000574916.1_1_17:685618-686569:+|nuORF	ENST00000574916.1_1_17:685618-686569:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	485.6370544433594	3	484.963882	1451.86982	-0.65736	-0.00031879	0.9311	0.00045155	0.27374	0.00013276	484.9642229406665	41.41	0.4574	41.41	41.164	41.622	0					25	8	5	0	0	0	0.73818	1	14353	14353		1.1098	0.6038	1	7901300			44975	7652	32881	33146	43902	43902					0.16195661090569047
RRWWGLTSM	9	Unmodified	_RRWWGLTSM_					0	0	0			REV__ENST00000594706.5_1_19:57351989-57352046:-|nuORF	REV__ENST00000594706.5_1_19:57351989-57352046:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	597.7030639648438	2	596.805842	1191.59713	-0.51706	-0.00030859	-2.258	-0.0013476	-2.7751	-0.0016562	597.8110351635681	83.941	0.70834	83.941	83.483	84.191	0					28	13	3	0	0	0	0.64808	1	30733	30733		11.64	2.2572	1	4356900	+		44976	26464	32882	33147	43903	43903					0.008997163051844836
RRWWWRRRRR	10	Unmodified	_RRWWWRRRRR_					0	0	0		ENST00000475204.5_1_1:70687068-70687435:+|nuORF;ENST00000370951.5_1_1:70671397-70687435:+|nuORF;ENST00000463877.1_1_1:70671397-70687435:+|nuORF;ENST00000395136.6_2_1:70687096-70687432:+|nuORF	ENST00000475204.5_1_1:70687068-70687435:+|nuORF	ENST00000475204.5_1_1:70687068-70687435:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	835.6035766601562	2	835.485417	1668.95628	-0.64229	-0.00053662	0.26671	0.00022283	-0.37558	-0.00031379	835.4872467493301	120.93	0.2533	120.93	120.75	121.01	0					6	4	2	0	0	0	0.95034	1	44827	44827		0.40072	0.40072	1	30607000			44977	11161	32883	33148	43904	43904					0.14856085435781097
RRWYKTENEYY	11	Unmodified	_RRWYKTENEYY_					0	0	0		nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT	nc|ENSG00000054392|Q5VTY9-5|HHAT	nc|ENSG00000054392|Q5VTY9-5|HHAT	MSMS	A375_MHC_IP_R2	2	536.5885009765625	3	536.591557	1606.75284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.621	1	83.363	82.863	83.863	0.74293								0	0	0	0.16351	1	31386	31386		0.45452	0.35968	1				44978	1259	32884	33149	43905	43905					-0.02626586430324096
RRWYVPVKDL	10	Unmodified	_RRWYVPVKDL_					0	0	0		ENSG00000112293|ENST00000230036|GPLD1	ENSG00000112293|ENST00000230036|GPLD1	ENSG00000112293|ENST00000230036|GPLD1	MSMS	A375_MHC_IP_R2	2	666.3843994140625	2	666.382771	1330.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.39	1	121.84	121.34	122.34	0.44488								0	0	0	0.15465	1	46426	46426		5.7319	0	1				44979	3069	32885	33150	43906	43906					0.09884449342348489
RRYFKQQEV	9	Unmodified	_RRYFKQQEV_					0	0	0		ENSG00000151502|ENST00000281187|VPS26B	ENSG00000151502|ENST00000281187|VPS26B	ENSG00000151502|ENST00000281187|VPS26B	MULTI-SECPEP	A375_MHC_IP_R1	1	418.963134765625	3	418.563161	1252.66765	0.063263	2.648E-05	-0.12006	-5.0253E-05	-0.056797	-2.3773E-05	418.5631067564568	19.628	0.50879	19.628	19.42	19.928	0					22	9	3	0	0	0	0.39388	1	4933	4933		29.841	17.613	1	4096400			44980	5912	32886	33151	43907	43907					0.051427128944851574
RRYFRNLLRMR	11	Unmodified	_RRYFRNLLRMR_					0	0	0			REV__BRWD1|p.V1215L|1|0.11|ENSG00000185658|chr21:39218168-39218168|C/G|missense_variant	REV__BRWD1|p.V1215L|1|0.11|ENSG00000185658|chr21:39218168-39218168|C/G|missense_variant	MSMS	A375_MHC_IP_R1	1	527.6497802734375	3	527.640411	1579.8994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.546	1	82.546	82.046	83.046	0								0	0	0	0.1636	1	30187	30187		0	0	1		+		44981	15534	32887	33152	43908	43908					0.13264857044396194
RRYGKRFNLIL	11	Unmodified	_RRYGKRFNLIL_					0	0	0			REV__ENSG00000163510|ENST00000410053|CWC22	REV__ENSG00000163510|ENST00000410053|CWC22	MSMS	A375_MHC_IP_R1	1	718.3277587890625	2	718.43587	1434.85719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.01	1	145.01	144.51	145.51	0								0	0	0	0.1636	1	55597	55597		0	0	1		+		44982	20371	32888	33153	43909	43909					0.15715204907724
RRYHIYENGTL	11	Unmodified	_RRYHIYENGTL_					0	0	0		ENSG00000134121|ENST00000256509|CHL1;nc|ENSG00000134121|O00533|CHL1;ENST00000471332.1_1_3:403392-405149:+|nuORF	ENSG00000134121|ENST00000256509|CHL1	ENSG00000134121|ENST00000256509|CHL1	MULTI-MSMS	A375_MHC_IP_R1	1	711.2650146484375	2	711.36785	1420.72115	-0.59406	-0.0004226	0.030145	2.1444E-05	-0.56392	-0.00040115	711.3681299177217	68.743	0.81026	68.743	68.209	69.02	0					19	15	2	0	0	0	0.72932	1	24885	24885		9.544	0.16085	1	2408600			44983	4552	32889	33154	43910	43910					0.027614656063633447
RRYKRRRKKRS	11	Unmodified	_RRYKRRRKKRS_					0	0	0		nc|ENSG00000197381|P78563-5|ADARB1	nc|ENSG00000197381|P78563-5|ADARB1	nc|ENSG00000197381|P78563-5|ADARB1	MSMS	A375_MHC_IP_R1	1	795.5055541992188	2	795.506015	1588.99748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.87	1	67.87	67.37	68.37	0								0	0	0	0.1636	1	24599	24599		0	0	1				44984	14844	32890	33155	43911	43911					0.22653801684600694
RRYLRVVVL	9	Unmodified	_RRYLRVVVL_					0	0	0		nc|ENSG00000151233|Q4G148-2|GXYLT1;ENSG00000151233|ENST00000398675|GXYLT1	nc|ENSG00000151233|Q4G148-2|GXYLT1	nc|ENSG00000151233|Q4G148-2|GXYLT1	MULTI-SECPEP	A375_MHC_IP_R1	1	392.324462890625	3	391.924142	1172.7506	0.28604	0.0001121	0.2304	9.0301E-05	0.51644	0.00020241	391.9241812014991	51.854	0.51078	51.854	51.625	52.136	0					19	9	3	0	0	0	0.67539	1	18417	18417		16.149	3.9084	1	3630000			44985	5889	32891	33156	43912	43912					0.17113074413191498
RRYLSPKYI	9	Unmodified	_RRYLSPKYI_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-SECPEP	A375_MHC_IP_R1	1	399.63616943359375	3	399.236385	1194.68733	-0.32448	-0.00012955	0.090601	3.6171E-05	-0.23388	-9.3374E-05	399.23638020349154	32.185	0.56386	32.185	31.87	32.434	0					26	10	3	0	0	0	0.23313	1	10371	10371		57.249	36.835	1	8375300			44986	6498;13685	32892	33157	43913	43913					0.09777088905275377
RRYLSPKYI	9	Unmodified	_RRYLSPKYI_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	A375_MHC_IP_R2	2	399.958740234375	3	399.236385	1194.68733	-0.094899	-3.7887E-05	-0.067239	-2.6844E-05	-0.16214	-6.4731E-05	399.2363027679588	31.232	0.40859	31.951	31.719	32.128	0.71857					24	7	4	0	0	0	0.46357	1	10985	10985		21.59	7.9753	1	9983800			44987	6498;13685	32892	33157	43914	43914					0.09777088905275377
RRYREFVWLRQ	11	Unmodified	_RRYREFVWLRQ_					0	0	0		ENSG00000086300|ENST00000338523|SNX10	ENSG00000086300|ENST00000338523|SNX10	ENSG00000086300|ENST00000338523|SNX10	MULTI-MSMS	A375_MHC_IP_R1	1	537.3674926757812	3	536.967181	1607.87971	-0.39967	-0.00021461	0.71182	0.00038222	0.31215	0.00016762	536.9676359761587	21.808	0.45742	21.808	21.555	22.013	0					18	8	3	0	0	0	0.73807	1	5804	5804		1.2148	1.12	1	1761400			44988	1835	32893	33158	43915	43915					0.10008804305311969
RRYRIWKRRRV	11	Unmodified	_RRYRIWKRRRV_					0	0	0			REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	MSMS	A375_MHC_IP_R1	1	823.0099487304688	2	823.010933	1644.00731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.12	1	119.12	118.62	119.62	0								0	0	0	0.1636	1	43976	43976		0	0	1		+		44989	22570	32894	33159	43916	43916					0.2110698968995166
RRYRRPRTRFL	11	Unmodified	_RRYRRPRTRFL_					0	0	0		ENSG00000213921|ENST00000638280|LEUTX	ENSG00000213921|ENST00000638280|LEUTX	ENSG00000213921|ENST00000638280|LEUTX	MSMS	A375_MHC_IP_R2	2	789.0093383789062	2	788.974016	1575.93348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.77	1	145.8	145.3	146.3	0.021408								0	0	0	0.16355	1	56863	56863		0.26902	0.26902	1				44990	9590	32895	33160	43917	43917					0.1685502152765821
RRYVAKKL	8	Unmodified	_RRYVAKKL_					0	0	0		ENSG00000108592|ENST00000427159|FTSJ3	ENSG00000108592|ENST00000427159|FTSJ3	ENSG00000108592|ENST00000427159|FTSJ3	MSMS	A375_MHC_IP_R1	1	517.6983032226562	2	517.335093	1032.65563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.75	1	144.75	144.25	145.25	0								0	0	0	0.16876	1	55502	55502		0.79363	0	1				44991	2821	32896	33161	43918	43918					0.1406114094197619
RSAAERWKAF	10	Unmodified	_RSAAERWKAF_					0	0	0		ENSG00000279051|ENST00000302622|OR6Q1	ENSG00000279051|ENST00000302622|OR6Q1	ENSG00000279051|ENST00000302622|OR6Q1	MULTI-SECPEP	A375_MHC_IP_R2	2	407.971435546875	3	407.887756	1220.64144	0.08491	3.4634E-05	-1.6855	-0.00068751	-1.6006	-0.00065287	407.8872119766521	42.759	0.25397	43.531	43.369	43.623	0.7724					6	4	2	0	0	0	0.92514	1	15892	15892		1.2148	0	1	816730			44992	10042	32897	33162	43919	43919					0.03994443723013319
RSAATVAAW	9	Unmodified	_RSAATVAAW_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	A375_MHC_IP_R2	2	467.1507873535156	2	466.751059	931.487565	-0.71535	-0.00033389	0.53525	0.00024983	-0.18011	-8.4064E-05	466.7511894334584	40.384	0.45602	41.158	40.93	41.386	0.77451					11	8	2	0	0	0	0.44024	1	14991	14991		22.736	5.6234	1	2423500			44993	2240	32898	33163	43920	43920					0.019080339574998106
RSAAVTCTF	9	Unmodified	_RSAAVTCTF_					0	0	0		ENST00000568470.5_1_16:66968788-66968911:+|nuORF	ENST00000568470.5_1_16:66968788-66968911:+|nuORF	ENST00000568470.5_1_16:66968788-66968911:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	478.6366882324219	2	478.236927	954.459301	-0.30711	-0.00014687	-0.24473	-0.00011704	-0.55184	-0.00026391	478.2369310011159	42.505	0.75859	42.505	42.285	43.043	0					29	14	3	0	0	0	0.19747	1	14744	14744		38.176	4.0731	1	3534200			44994	13579	32899	33164	43921	43921					-0.01975032014070166
RSAAVTCTF	9	Unmodified	_RSAAVTCTF_					0	0	0		ENST00000568470.5_1_16:66968788-66968911:+|nuORF	ENST00000568470.5_1_16:66968788-66968911:+|nuORF	ENST00000568470.5_1_16:66968788-66968911:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	478.6364440917969	2	478.236927	954.459301	-0.57396	-0.00027449	-0.19038	-9.1048E-05	-0.76434	-0.00036554	478.236849636208	41.653	0.97041	42.427	42.198	43.169	0.77451					30	18	2	0	0	0	0.19747	1	15458	15458		38.176	4.0731	1	3734900			44995	13579	32899	33164	43922	43922					-0.01975032014070166
RSADFGRTW	9	Unmodified	_RSADFGRTW_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MULTI-MSMS	A375_MHC_IP_R1	1	548.204833984375	2	548.270147	1094.52574	-0.4856	-0.00026624	-0.093968	-5.152E-05	-0.57957	-0.00031776	548.2700842206472	33.573	0.65897	33.573	33.342	34.001	0					26	12	3	0	0	0	0.10518	1	11002	11002		49.742	21.255	1	34340000			44996	7673	32900	33165	43923	43923					-0.01774080127825073
RSADFGRTW	9	Unmodified	_RSADFGRTW_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MULTI-MSMS	A375_MHC_IP_R2	2	548.6694946289062	2	548.270147	1094.52574	-0.85675	-0.00046973	0.058404	3.2021E-05	-0.79834	-0.00043771	548.2701694114047	32.807	0.76266	33.544	33.317	34.079	0.73692					22	14	2	0	0	0	0.058715	1	11691	11691		60.899	37.751	1	35020000			44997	7673	32900	33165	43924	43924					-0.01774080127825073
RSADLPHSF	9	Unmodified	_RSADLPHSF_					0	0	0		ENST00000493087.5_1_12:32755237-32793464:+|nuORF;nc|ENSG00000139132|Q96M96|FGD4;ENSG00000139132|ENST00000534526|FGD4	ENST00000493087.5_1_12:32755237-32793464:+|nuORF	ENST00000493087.5_1_12:32755237-32793464:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	515.6587524414062	2	515.259248	1028.50394	-0.76974	-0.00039661	-0.078038	-4.021E-05	-0.84777	-0.00043682	515.2591391276521	32.71	0.45346	32.71	32.485	32.938	0					18	8	3	0	0	0	0.074405	1	10598	10598		70.332	32.156	1	9230600			44998	5049	32901	33166	43925	43925					-0.009168848763920323
RSADLPHSF	9	Unmodified	_RSADLPHSF_					0	0	0		ENST00000493087.5_1_12:32755237-32793464:+|nuORF;nc|ENSG00000139132|Q96M96|FGD4;ENSG00000139132|ENST00000534526|FGD4	ENST00000493087.5_1_12:32755237-32793464:+|nuORF	ENST00000493087.5_1_12:32755237-32793464:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	515.6588134765625	2	515.259248	1028.50394	-0.77298	-0.00039828	0.15836	8.1597E-05	-0.61461	-0.00031669	515.2592650001612	31.947	0.40467	32.684	32.453	32.857	0.73692					18	7	3	0	0	0	0.23894	1	11326	11326		55.503	17.327	1	8714800			44999	5049	32901	33166	43926	43926					-0.009168848763920323
RSALRNWVF	9	Unmodified	_RSALRNWVF_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	A375_MHC_IP_R1	1	383.9490966796875	3	383.548964	1147.62506	0.1585	6.0791E-05	0.23247	8.9163E-05	0.39097	0.00014995	383.5490148140026	65.762	0.45786	65.762	65.514	65.972	0					20	8	3	0	0	0	0.71416	1	23815	23815		6.1918	0	1	2864800			45000	1997	32902	33167	43927	43927					0.05715362556929904
RSALRNWVF	9	Unmodified	_RSALRNWVF_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-SECPEP	A375_MHC_IP_R2	2	383.9491271972656	3	383.548964	1147.62506	-0.074078	-2.8412E-05	0.077358	2.967E-05	0.0032797	1.2579E-06	383.54898601817325	64.676	0.5091	65.417	65.157	65.666	0.74023					19	9	3	0	0	0	0.74597	1	24522	24522		12.228	1.3286	1	2596100			45001	1997	32902	33167	43928	43928					0.05715362556929904
RSASSASSLF	10	Unmodified	_RSASSASSLF_					0	0	0		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	MULTI-SECPEP	A375_MHC_IP_R2	2	507.156494140625	2	506.756538	1011.49852	-0.92889	-0.00047072	0.25385	0.00012864	-0.67504	-0.00034208	506.7567268774546	41.33	0.40496	42.105	41.895	42.3	0.77451					14	7	2	0	0	0	0.58856	1	15349	15349		34.932	34.932	1	2992200			45002	4592	32903	33168	43929	43929					-0.006766084588434751
RSAVTGPGELW	11	Unmodified	_RSAVTGPGELW_					0	0	0		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	MULTI-MSMS	A375_MHC_IP_R1	1	587.2059326171875	2	586.806562	1171.59857	-0.64241	-0.00037697	0.59117	0.0003469	-0.051244	-3.0071E-05	586.8066212045127	67.669	0.50517	67.669	67.449	67.955	0					18	9	3	0	0	0	0.50903	1	24539	24539		36.395	23.353	1	1930200			45003	8710	32904	33169	43930	43930					0.019636288749325104
RSAVTGPGELW	11	Unmodified	_RSAVTGPGELW_					0	0	0		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	MULTI-SECPEP	A375_MHC_IP_R2	2	587.2066040039062	2	586.806562	1171.59857	-0.63771	-0.00037421	0.11858	6.9582E-05	-0.51913	-0.00030463	586.8066138447791	66.871	0.56102	67.607	67.24	67.801	0.73631					21	10	3	0	0	0	0.8205	1	25291	25291		33.821	24.438	1	2112500			45004	8710	32904	33169	43931	43931					0.019636288749325104
RSAWDLTTH	9	Unmodified	_RSAWDLTTH_					0	0	0		nc|ENSG00000164920|Q8N2R0-3|OSR2	nc|ENSG00000164920|Q8N2R0-3|OSR2	nc|ENSG00000164920|Q8N2R0-3|OSR2	MULTI-SECPEP	A375_MHC_IP_R1	1	544.1423950195312	2	543.76998	1085.52541	-0.68342	-0.00037162	-0.44648	-0.00024278	-1.1299	-0.0006144	543.7699037978532	27.576	0.55583	27.576	27.381	27.937	0					22	10	3	0	0	0	0.74412	1	8387	8387		14.838	11.843	1	2964300			45005	14736	32905	33170	43932	43932					-0.013934998476997862
RSAWSHVRMW	10	Unmodified	_RSAWSHVRMW_					0	0	0			REV__ENSG00000223510|ENST00000420162|CDRT15	REV__ENSG00000223510|ENST00000420162|CDRT15	MSMS	A375_MHC_IP_R1	1	657.93896484375	2	658.327473	1314.64039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.157	1	94.157	93.657	94.657	0								0	0	0	0.15465	1	34607	34607		5.7319	0	1		+		45006	22700	32906	33171	43933	43933					-0.00434093917510836
RSAYLSQHRK	10	Unmodified	_RSAYLSQHRK_					0	0	0		ENSG00000180938|ENST00000319286|ZNF572	ENSG00000180938|ENST00000319286|ZNF572	ENSG00000180938|ENST00000319286|ZNF572	MULTI-MSMS	A375_MHC_IP_R2	2	416.6326599121094	3	415.898544	1244.6738	-0.34683	-0.00014425	-0.48348	-0.00020108	-0.83031	-0.00034532	415.89834481161773	20.232	0.8628	20.842	20.399	21.262	0.61029					31	14	3	0	0	0	0.70565	1	6264	6264		9.7643	3.5299	1	3803900			45007	8327	32907	33172	43934	43934					0.061252311260204806
RSCMCTAGY	9	Unmodified	_RSCMCTAGY_					0	0	0		ENSG00000123384|ENST00000243077|LRP1;LRP1|p.S1878R|1|0.1|ENSG00000123384|chr12:57181263-57181263|C/G|missense_variant	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MSMS	A375_MHC_IP_R1	1	496.1659851074219	2	496.193348	990.372142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.069	1	58.069	57.569	58.569	0								0	0	0	0.15486	1	20851	20851		12.532	0.89125	1				45008	3844	32908	33173	43935	43935					-0.12342897551650367
RSDCLGEHLY	10	Carbamidomethyl (C)	_RSDC(Carbamidomethyl (C))LGEHLY_	RSDC(1)LGEHLY		RSDC(42)LGEHLY		0	1	0		ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	MULTI-MSMS	A375_MHC_IP_R1	1	625.684814453125	2	625.285137	1248.55572	-0.31794	-0.0001988	-0.66221	-0.00041407	-0.98015	-0.00061287	625.2848204425878	35.74	0.4099	35.74	35.522	35.932	0					16	7	3	0	0	0	0.26783	1	11926	11926		42.312	27.474	1	5322200			45009	1577	32909	33174	43936	43936	9				-0.058615092447780626
RSDCLGEHLY	10	Carbamidomethyl (C)	_RSDC(Carbamidomethyl (C))LGEHLY_	RSDC(1)LGEHLY		RSDC(59)LGEHLY		0	1	0		ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	MULTI-MSMS	A375_MHC_IP_R2	2	625.68505859375	2	625.285137	1248.55572	-1.0033	-0.00062733	-0.10212	-6.3857E-05	-1.1054	-0.00069119	625.285115248329	34.953	0.45314	35.716	35.425	35.878	0.76338					18	8	3	0	0	0	0.12141	1	12656	12656		59.052	33.653	1	4669900			45010	1577	32909	33174	43937	43937	9				-0.058615092447780626
RSDEHFASI	9	Unmodified	_RSDEHFASI_					0	0	0			REV__ENST00000427137.1_1_7:46039264-46039813:-|nuORF	REV__ENST00000427137.1_1_7:46039264-46039813:-|nuORF	MSMS	A375_MHC_IP_R2	2	531.201171875	2	531.254163	1060.49377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.23	1	134.37	133.87	134.87	0.13901								0	0	0	0.15486	1	52804	52804		7.9102	0.62092	1		+		45011	24662	32910	33175	43938	43938					-0.034054926016324316
RSDELTRHF	9	Unmodified	_RSDELTRHF_					0	0	0		ENSG00000109787|ENST00000261438|KLF3;ENST00000358094.7_1_X:56295423-56310924:+|nuORF;ENST00000462627.5_1_X:56295800-56310924:+|nuORF;nc|ENSG00000102349|O95600-5|KLF8;ENSG00000102349|ENST00000468660|KLF8;ENSG00000067082|ENST00000497571|KLF6	ENSG00000109787|ENST00000261438|KLF3;ENSG00000067082|ENST00000497571|KLF6	ENSG00000109787|ENST00000261438|KLF3	MULTI-SECPEP	A375_MHC_IP_R1	1	387.9319763183594	3	387.53175	1159.57342	-0.0049609	-1.9225E-06	0.19245	7.4582E-05	0.18749	7.2659E-05	387.5318291842664	23.407	0.61131	23.407	23.227	23.838	0					23	11	4	0	0	0	0.58126	1	6413	6413		31.636	10.046	1	16978000			45012	2892;1427	32911	33176	43939	43939					1.5740723711132887E-05
RSDELTRHF	9	Unmodified	_RSDELTRHF_					0	0	0		ENSG00000109787|ENST00000261438|KLF3;ENST00000358094.7_1_X:56295423-56310924:+|nuORF;ENST00000462627.5_1_X:56295800-56310924:+|nuORF;nc|ENSG00000102349|O95600-5|KLF8;ENSG00000102349|ENST00000468660|KLF8;ENSG00000067082|ENST00000497571|KLF6	ENSG00000109787|ENST00000261438|KLF3;ENSG00000067082|ENST00000497571|KLF6	ENSG00000109787|ENST00000261438|KLF3	MULTI-MSMS	A375_MHC_IP_R2	2	387.9317626953125	3	387.53175	1159.57342	-0.47783	-0.00018518	0.025677	9.9507E-06	-0.45216	-0.00017522	387.5318663153229	21.173	0.45501	21.793	21.473	21.928	0.61932					19	8	3	0	0	0	0.058602	1	6640	6640		60.943	45.205	1	4231600			45013	2892;1427	32911	33176	43940	43940					1.5740723711132887E-05
RSDFFTSFY	9	Unmodified	_RSDFFTSFY_					0	0	0		ENSG00000090060|ENST00000216277|PAPOLA;nc|ENSG00000090060|P51003-2|PAPOLA;ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000090060|ENST00000216277|PAPOLA;ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000090060|ENST00000216277|PAPOLA	MULTI-MSMS	A375_MHC_IP_R1	1	585.6666870117188	2	585.266739	1168.51892	-0.22728	-0.00013302	0.13115	7.676E-05	-0.09613	-5.6262E-05	585.2668327745007	100.61	0.55762	100.61	100.33	100.89	0					23	10	3	0	0	0	0.14858	1	36964	36964		41.956	15.072	1	4983400			45014	1943;9658	32912	33177	43941	43941					-0.05859437799040279
RSDFFTSFY	9	Unmodified	_RSDFFTSFY_					0	0	0		ENSG00000090060|ENST00000216277|PAPOLA;nc|ENSG00000090060|P51003-2|PAPOLA;ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000090060|ENST00000216277|PAPOLA;ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000090060|ENST00000216277|PAPOLA	MULTI-MSMS	A375_MHC_IP_R2	2	585.666259765625	2	585.266739	1168.51892	-0.24531	-0.00014357	0.36351	0.00021275	0.1182	6.918E-05	585.2669140587991	99.793	0.71053	100.56	100.27	100.98	0.76278					27	13	3	0	0	0	0.14858	1	37838	37838		41.956	15.072	1	4800100			45015	1943;9658	32912	33177	43942	43942					-0.05859437799040279
RSDGAGPLY	9	Unmodified	_RSDGAGPLY_					0	0	0		nc|ENSG00000167113|Q9Y3A0-2|COQ4;ENSG00000167113|ENST00000300452|COQ4	nc|ENSG00000167113|Q9Y3A0-2|COQ4	nc|ENSG00000167113|Q9Y3A0-2|COQ4	MULTI-MSMS	A375_MHC_IP_R1	1	468.6324157714844	2	468.232699	934.450845	-0.29491	-0.00013809	0.11931	5.5867E-05	-0.1756	-8.2222E-05	468.23280271214765	31.449	0.45611	31.449	31.211	31.667	0					17	8	3	0	0	0	0.094655	1	10072	10072		51.63	11.672	1	4743000			45016	7157	32913	33178	43943	43943					-0.019002626590577165
RSDGLLQL	8	Unmodified	_RSDGLLQL_					0	0	0		ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	MULTI-MSMS	A375_MHC_IP_R1	1	451.65875244140625	2	451.258717	900.50288	0.16278	7.3457E-05	-0.068224	-3.0787E-05	0.094557	4.267E-05	451.25861406895467	69.912	0.65807	69.912	69.631	70.289	0					31	12	3	0	0	0	0.57987	1	25359	25359		45.7	3.6051	1	7187700			45017	5066	32914	33179	43944	43944					0.048649007547169276
RSDGLLQLW	9	Unmodified	_RSDGLLQLW_					0	0	0		ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	MULTI-MSMS	A375_MHC_IP_R2	2	544.6980590820312	2	544.298373	1086.58219	-0.70277	-0.00038252	0.030918	1.6829E-05	-0.67185	-0.00036569	544.2983519085119	109.51	0.91325	110.26	109.83	110.74	0.74684					51	17	4	0	0	0	0.017727	2	41273	41273;41429		86.332	4.7188	1	45208000			45018	5066	32915	33180	43945;43946	43945					0.04236547708865146
RSDLQSLGY	9	Unmodified	_RSDLQSLGY_					0	0	0		ENST00000600284.5_1_19:50490096-50500767:-|nuORF;nc|ENSG00000105053|Q8IV63-2|VRK3;ENST00000594090.5_1_19:50491627-50519408:-|nuORF;nc|ENSG00000105053|Q8IV63-3|VRK3;ENSG00000105053|ENST00000316763|VRK3	ENST00000600284.5_1_19:50490096-50500767:-|nuORF	ENST00000600284.5_1_19:50490096-50500767:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	520.1641235351562	2	519.764363	1037.51417	-0.46782	-0.00024316	-0.033225	-1.7269E-05	-0.50105	-0.00026043	519.7643944999705	47.081	0.96614	47.842	47.309	48.275	0.76128					38	18	3	0	0	0	0.30925	1	17607	17607		49.554	29.101	1	7479000			45019	2564	32916	33181	43947	43947					-0.0030832194181584782
RSDPGGGGLAY	11	Unmodified	_RSDPGGGGLAY_					0	0	0		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	525.65380859375	2	525.254163	1048.49377	-0.496	-0.00026053	-0.060952	-3.2015E-05	-0.55696	-0.00029254	525.2541292684988	31.342	1.0655	31.342	30.959	32.024	0					70	20	5	0	0	0	0.094476	2	9991	9991;10124		70.929	41.122	1	117400000			45020	8500	32917	33182	43948;43949	43948					-0.028534926015936435
RSDPGGGGLAY	11	Unmodified	_RSDPGGGGLAY_					0	0	0		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	525.6531982421875	2	525.254163	1048.49377	-0.51282	-0.00026936	-0.35725	-0.00018764	-0.87006	-0.000457	525.2540065095335	30.73	0.96187	31.448	31.064	32.026	0.71857					71	18	5	0	0	0	0.094476	1	10773	10773		70.929	34.802	1	91932000			45021	8500	32917	33182	43950	43950					-0.028534926015936435
RSDPGHYSF	9	Unmodified	_RSDPGHYSF_					0	0	0		ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-MSMS	A375_MHC_IP_R1	1	533.6405639648438	2	533.241055	1064.46756	-0.95245	-0.00050789	-0.087849	-4.6845E-05	-1.0403	-0.00055473	533.2410460802948	26.716	0.45328	26.716	26.524	26.978	0					21	8	3	0	0	0	0.062639	1	7999	7999		59.368	34.377	1	11773000			45022	9420	32918	33183	43951	43951					-0.06209761773106948
RSDPGHYSF	9	Unmodified	_RSDPGHYSF_					0	0	0		ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-MSMS	A375_MHC_IP_R2	2	533.6406860351562	2	533.241055	1064.46756	-1.1516	-0.00061409	0.05754	3.0683E-05	-1.0941	-0.00058341	533.2410076372763	26.119	0.55912	26.779	26.602	27.161	0.65992					26	10	3	0	0	0	0.073067	1	8824	8824		55.503	27.874	1	12407000			45023	9420	32918	33183	43952	43952					-0.06209761773106948
RSDPNSESLY	10	Unmodified	_RSDPNSESLY_					0	0	0		ENSG00000138593|ENST00000559471|SECISBP2L	ENSG00000138593|ENST00000559471|SECISBP2L	ENSG00000138593|ENST00000559471|SECISBP2L	MULTI-MSMS	A375_MHC_IP_R1	1	584.6675415039062	2	584.267467	1166.52038	-0.60593	-0.00035403	-0.11168	-6.5252E-05	-0.71761	-0.00041928	584.2673242720133	29.839	0.54304	29.839	29.607	30.15	0					25	10	3	0	0	0	0.028893	1	9385	9385		81.915	28.082	1	32121000			45024	5002	32919	33184	43953	43953					-0.056218485009367214
RSDPNSESLY	10	Unmodified	_RSDPNSESLY_					0	0	0		ENSG00000138593|ENST00000559471|SECISBP2L	ENSG00000138593|ENST00000559471|SECISBP2L	ENSG00000138593|ENST00000559471|SECISBP2L	MULTI-MSMS	A375_MHC_IP_R2	2	584.6663208007812	2	584.267467	1166.52038	-1.3242	-0.00077367	0.48344	0.00028246	-0.84072	-0.00049121	584.2677092242416	29.211	0.5558	29.91	29.73	30.286	0.69872					27	10	3	0	0	0	0.067551	1	10161	10161		70.929	19.299	1	32811000			45025	5002	32919	33184	43954	43954					-0.056218485009367214
RSDPTSYAGY	10	Unmodified	_RSDPTSYAGY_					0	0	0		ENSG00000069849|ENST00000286371|ATP1B3;nc|ENSG00000069849|P54709-2|ATP1B3;ENST00000465172.5_1_3:141595540-141640837:+|nuORF	ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	MULTI-SECPEP	A375_MHC_IP_R1	1	558.6714477539062	2	558.751453	1115.48835	-0.747	-0.00041739	0.30872	0.0001725	-0.43828	-0.00024489	558.7517564943238	32.56	0.55491	32.56	32.231	32.785	0					18	10	3	0	0	0	0.71464	1	10514	10514		33.445	10.709	1	4637600			45026	1480	32920	33185	43955	43955					-0.06477216184111967
RSDSEIIGY	9	Unmodified	_RSDSEIIGY_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-MSMS	A375_MHC_IP_R1	1	520.6558227539062	2	520.256371	1038.49819	-0.21299	-0.00011081	-0.11907	-6.1947E-05	-0.33206	-0.00017276	520.2563987421472	45.435	0.65695	45.435	45.081	45.738	0					30	12	3	0	0	0	0.32092	1	15877	15877		29.082	1.4528	1	6614600			45027	5030	32921	33186	43956	43956					-0.019520281786981286
RSDSEIIGY	9	Unmodified	_RSDSEIIGY_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.9591674804688	2	520.256371	1038.49819	-0.7529	-0.0003917	-0.23393	-0.0001217	-0.98683	-0.00051341	520.2562397415011	44.661	0.71445	45.43	45.035	45.75	0.7691					31	13	3	0	0	0	0.56537	1	16659	16659		29.082	5.061	1	4626300			45028	5030	32921	33186	43957	43957					-0.019520281786981286
RSDSYVELSQY	11	Unmodified	_RSDSYVELSQY_					0	0	0		ENST00000463783.1_1_3:196666081-196669374:-|nuORF;nc|ENSG00000114503|P52298-3|NCBP2;ENSG00000114503|ENST00000321256|NCBP2;ENST00000468923.5_1_3:196664263-196669374:-|nuORF	ENST00000463783.1_1_3:196666081-196669374:-|nuORF	ENST00000463783.1_1_3:196666081-196669374:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	674.2140502929688	2	673.814781	1345.61501	-1.0996	-0.00074089	-0.40279	-0.00027141	-1.5023	-0.0010123	673.8148310253071	56.581	0.35781	57.331	57.101	57.459	0.75015					14	6	3	0	0	0	0.34239	1	21421	21421		43.477	16.254	1	2251000			45029	3226	32922	33187	43958	43958					-0.04397334749614856
RSDSYVELSQY	11	Unmodified	_RSDSYVELSQY_					0	0	0		ENST00000463783.1_1_3:196666081-196669374:-|nuORF;nc|ENSG00000114503|P52298-3|NCBP2;ENSG00000114503|ENST00000321256|NCBP2;ENST00000468923.5_1_3:196664263-196669374:-|nuORF	ENST00000463783.1_1_3:196666081-196669374:-|nuORF	ENST00000463783.1_1_3:196666081-196669374:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	673.814781	1345.61501	-0.5909	-0.00039815	-0.65232	-0.00043954	-1.2432	-0.0008377	674.3160382491467	57.195	0.35659	57.195	57.007	57.364	0	-0.067724	-0.00012687	NaN	43.477	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1321600			45030	3226	32922	33187							-0.04397334749614856
RSDTPAKRVR	10	Unmodified	_RSDTPAKRVR_					0	0	0			REV__ZC3H4|p.P1080S|1|0.43|ENSG00000130749|chr19:47067030-47067030|G/A|missense_variant	REV__ZC3H4|p.P1080S|1|0.43|ENSG00000130749|chr19:47067030-47067030|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	593.7449340820312	2	593.344178	1184.6738	-0.44741	-0.00026547	0.022241	1.3197E-05	-0.42517	-0.00025227	593.3443736698762	134.84	0.35419	134.98	134.9	135.25	0.13901					11	6	2	0	0	0	0.71466	1	53066	53066		5.7319	1.7875	1	2220000	+		45031	29015	32923	33188	43959	43959					0.08885231126009785
RSDTPLIY	8	Unmodified	_RSDTPLIY_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	A375_MHC_IP_R1	1	483.15838623046875	2	482.758549	963.502546	-0.30144	-0.00014552	0.14723	7.1078E-05	-0.1542	-7.4443E-05	482.75862172194826	52.216	1.4211	52.216	51.829	53.25	0					59	27	4	0	0	0	0.42086	1	18488	18488		52.268	12.311	1	48402000			45032	9025	32924	33189	43960	43960					0.019334810348595965
RSDTPLIY	8	Unmodified	_RSDTPLIY_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	A375_MHC_IP_R2	2	483.1579284667969	2	482.758549	963.502546	-0.76662	-0.00037009	-0.16834	-8.1269E-05	-0.93496	-0.00045136	482.7585390373611	51.397	0.86283	52.149	51.763	52.626	0.75225					53	16	4	0	0	0	0.33238	1	19268	19268		56.177	14.082	1	43074000			45033	9025	32924	33189	43961	43961					0.019334810348595965
RSDVEILGY	9	Unmodified	_RSDVEILGY_					0	0	0		nc|ENSG00000028116|Q86Y07-5|VRK2;nc|ENSG00000028116|Q86Y07-2|VRK2;ENSG00000028116|ENST00000340157|VRK2;nc|ENSG00000028116|Q86Y07-4|VRK2;nc|ENSG00000028116|Q86Y07-3|VRK2	nc|ENSG00000028116|Q86Y07-5|VRK2	nc|ENSG00000028116|Q86Y07-5|VRK2	MULTI-MSMS	A375_MHC_IP_R1	1	526.6837768554688	2	526.274564	1050.53457	-0.86286	-0.0004541	0.34046	0.00017918	-0.52239	-0.00027492	526.274697520014	67.774	0.6584	67.774	67.449	68.108	0					33	12	3	0	0	0	0.22013	1	24631	24631		36.506	10.238	1	18679000			45034	1100	32925	33190	43962	43962					0.011328487180207958
RSDVEILGY	9	Unmodified	_RSDVEILGY_					0	0	0		nc|ENSG00000028116|Q86Y07-5|VRK2;nc|ENSG00000028116|Q86Y07-2|VRK2;ENSG00000028116|ENST00000340157|VRK2;nc|ENSG00000028116|Q86Y07-4|VRK2;nc|ENSG00000028116|Q86Y07-3|VRK2	nc|ENSG00000028116|Q86Y07-5|VRK2	nc|ENSG00000028116|Q86Y07-5|VRK2	MULTI-SECPEP	A375_MHC_IP_R2	2	526.6577758789062	2	526.274564	1050.53457	-0.51931	-0.0002733	-0.25535	-0.00013438	-0.77466	-0.00040769	526.2743889242493	66.98	0.71122	67.717	67.24	67.951	0.73631					43	13	5	0	0	0	0.14606	1	25343	25343		55.503	7.7541	1	22085000			45035	1100	32925	33190	43963	43963					0.011328487180207958
RSEAKLVIPK	10	Unmodified	_RSEAKLVIPK_					0	0	0			REV__ENSG00000160870|ENST00000336374|CYP3A7	REV__ENSG00000160870|ENST00000336374|CYP3A7	MULTI-SECPEP	A375_MHC_IP_R1	1	381.63134765625	3	380.908157	1139.70264	0.0060469	2.3033E-06	-0.68183	-0.00025971	-0.67578	-0.00025741	380.90799430563834	30.26	0.30297	30.26	30.15	30.453	0					7	5	2	0	0	0	0.93999	1	9611	9611		4.7159	2.4331	1	1613900	+		45036	20188	32926	33191	43964	43964					0.13837955702433646
RSEEGRLYY	9	Unmodified	_RSEEGRLYY_					0	0	0		nc|ENSG00000100916|Q5PSV4-2|BRMS1L;ENSG00000100916|ENST00000216807|BRMS1L	nc|ENSG00000100916|Q5PSV4-2|BRMS1L	nc|ENSG00000100916|Q5PSV4-2|BRMS1L	MULTI-SECPEP	A375_MHC_IP_R1	1	587.1884155273438	2	586.78837	1171.56219	-0.59832	-0.00035109	0.062847	3.6878E-05	-0.53547	-0.00031421	586.7884621698892	26.477	0.45651	26.477	26.271	26.728	0					20	8	3	0	0	0	0.30942	1	7889	7889		65.474	65.474	1	11411000			45037	2231	32927	33192	43965	43965					-0.0167324802175699
RSEEGRLYY	9	Unmodified	_RSEEGRLYY_					0	0	0		nc|ENSG00000100916|Q5PSV4-2|BRMS1L;ENSG00000100916|ENST00000216807|BRMS1L	nc|ENSG00000100916|Q5PSV4-2|BRMS1L	nc|ENSG00000100916|Q5PSV4-2|BRMS1L	MULTI-MSMS	A375_MHC_IP_R2	2	391.9277038574219	3	391.528005	1171.56219	-0.62853	-0.00024609	0.30609	0.00011984	-0.32245	-0.00012625	391.5280912638849	25.894	0.50892	26.554	26.296	26.805	0.65992					19	9	3	0	0	0	0.12339	1	8690	8690		46.475	26.849	1	5205200			45038	2231	32927	33192	43966	43966					-0.0167324802175699
RSEEGRLYY	9	Unmodified	_RSEEGRLYY_					0	0	0		nc|ENSG00000100916|Q5PSV4-2|BRMS1L;ENSG00000100916|ENST00000216807|BRMS1L	nc|ENSG00000100916|Q5PSV4-2|BRMS1L	nc|ENSG00000100916|Q5PSV4-2|BRMS1L	MULTI-SECPEP	A375_MHC_IP_R2	2	587.1879272460938	2	586.78837	1171.56219	-1.0035	-0.00058886	0.17399	0.00010209	-0.82954	-0.00048676	586.7884067384687	25.866	0.45765	26.526	26.296	26.754	0.65992					19	8	3	0	0	0	0.43936	1	8678	8678		53.317	53.317	1	11527000			45039	2231	32927	33192	43967	43967					-0.0167324802175699
RSEELSFRF	9	Unmodified	_RSEELSFRF_					0	0	0			REV__SCN2A|p.G543E|1|0.16|ENSG00000136531|chr2:165315715-165315715|G/A|missense_variant	REV__SCN2A|p.G543E|1|0.16|ENSG00000136531|chr2:165315715-165315715|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	391.2840576171875	3	390.86825	1169.58292	0.23818	9.3097E-05	0.047813	1.8688E-05	0.28599	0.00011179	391.2024409504563	35.984	0.40595	35.984	35.727	36.133	0					11	7	2	0	0	0	0.57304	1	12028	12028		13.519	0	1	2477400	+		45040	27918	32928	33193	43968	43968					0.0049134235789551894
RSETPSRYY	9	Unmodified	_RSETPSRYY_					0	0	0		nc|ENSG00000170448|Q6ZNB6-2|NFXL1;ENSG00000170448|ENST00000507489|NFXL1	nc|ENSG00000170448|Q6ZNB6-2|NFXL1	nc|ENSG00000170448|Q6ZNB6-2|NFXL1	MULTI-SECPEP	A375_MHC_IP_R2	2	386.6349792480469	3	386.856122	1157.54654	-0.44062	-0.00017046	0.46377	0.00017941	0.023144	8.9534E-06	386.8562521152055	19.736	0.45552	20.346	20.044	20.499	0.61029					13	8	3	0	0	0	0.77396	1	6093	6093		1.9064	0.1641	1	707050			45041	7506	32929	33194	43969	43969					-0.02593534538800668
RSEYHLWE	8	Unmodified	_RSEYHLWE_					0	0	0		ENSG00000170871|ENST00000307659|KIAA0232	ENSG00000170871|ENST00000307659|KIAA0232	ENSG00000170871|ENST00000307659|KIAA0232	MSMS	A375_MHC_IP_R1	1	373.5976867675781	3	373.845446	1118.51451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.033	1	18.033	17.533	18.533	0								0	0	0	0.16876	1	4269	4269		0.35063	0.081612	1				45042	7550	32930	33195	43970	43970					-0.04000902221969227
RSFADSYRQW	10	Unmodified	_RSFADSYRQW_					0	0	0		ENST00000534610.5_1_11:46639304-46666898:+|nuORF	ENST00000534610.5_1_11:46639304-46666898:+|nuORF	ENST00000534610.5_1_11:46639304-46666898:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	439.9450378417969	3	439.210788	1314.61053	0.2987	0.00013119	-0.49427	-0.00021709	-0.19557	-8.5897E-05	439.2105398718022	48.596	0.50628	48.596	48.375	48.882	0					21	9	3	0	0	0	0.011226	1	17164	17164		102.46	69.018	1	6861800			45043	13214	32931	33196	43971	43971					-0.03418754381868894
RSFADSYRQW	10	Unmodified	_RSFADSYRQW_					0	0	0		ENST00000534610.5_1_11:46639304-46666898:+|nuORF	ENST00000534610.5_1_11:46639304-46666898:+|nuORF	ENST00000534610.5_1_11:46639304-46666898:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	658.7120361328125	2	658.312543	1314.61053	-0.062332	-4.1034E-05	-0.54675	-0.00035993	-0.60908	-0.00040096	658.3120114965378	48.621	0.35437	48.621	48.426	48.78	0					10	6	2	0	0	0	0.70334	1	17214	17214		10.8	3.1906	1	1860500			45044	13214	32931	33196	43972	43972					-0.03418754381868894
RSFADSYRQW	10	Unmodified	_RSFADSYRQW_					0	0	0		ENST00000534610.5_1_11:46639304-46666898:+|nuORF	ENST00000534610.5_1_11:46639304-46666898:+|nuORF	ENST00000534610.5_1_11:46639304-46666898:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	439.6104431152344	3	439.210788	1314.61053	-0.20313	-8.9216E-05	-0.25949	-0.00011397	-0.46262	-0.00020319	439.2105843194549	47.965	0.65737	48.726	48.326	48.984	0.76128					26	12	3	0	0	0	0.011657	1	17961	17961		92.409	65.186	1	3874100			45045	13214	32931	33196	43973	43973					-0.03418754381868894
RSFDKGPFATF	11	Unmodified	_RSFDKGPFATF_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-SECPEP	A375_MHC_IP_R1	1	637.2330932617188	2	636.822212	1271.62987	-0.77829	-0.00049563	0.32738	0.00020848	-0.45092	-0.00028715	636.8222585021693	65.11	0.76224	65.11	64.7	65.462	0					34	14	3	0	0	0	0.35809	1	23543	23543		51.765	21.924	1	5077900			45046	6778	32932	33197	43974	43974					0.004922019090372487
RSFDKGPFATF	11	Unmodified	_RSFDKGPFATF_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-SECPEP	A375_MHC_IP_R2	2	424.63720703125	3	424.8839	1271.62987	-0.085632	-3.6384E-05	-0.22025	-9.3581E-05	-0.30588	-0.00012997	424.8838330141691	64.24	1.0177	64.98	64.446	65.463	0.74023					61	19	4	0	0	0	0.065145	1	24388	24388		54.259	31.243	1	10345000			45047	6778	32932	33197	43975	43975					0.004922019090372487
RSFDKGPFATF	11	Unmodified	_RSFDKGPFATF_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-SECPEP	A375_MHC_IP_R2	2	637.22216796875	2	636.822212	1271.62987	-0.70273	-0.00044751	-0.29679	-0.000189	-0.99952	-0.00063652	636.8220462062301	64.267	0.66136	65.008	64.547	65.208	0.74022					29	12	3	0	0	0	0.12543	1	24316	24316		66.683	37.601	1	2757400			45048	6778	32932	33197	43976	43976					0.004922019090372487
RSFDLGRQF	9	Unmodified	_RSFDLGRQF_					0	0	0		nc|ENSG00000214160|Q92685-2|ALG3;ENSG00000214160|ENST00000397676|ALG3	nc|ENSG00000214160|Q92685-2|ALG3	nc|ENSG00000214160|Q92685-2|ALG3	MULTI-MSMS	A375_MHC_IP_R1	1	563.7076416015625	2	563.293622	1124.57269	0.072981	4.111E-05	-0.45528	-0.00025646	-0.3823	-0.00021535	563.2932608345184	49.007	0.76007	49.007	48.679	49.439	0					39	14	4	0	0	0	0.16286	1	17332	17332		40.725	18.978	1	19739000			45049	9607	32933	33198	43977	43977					0.01538779423322012
RSFDLGRQF	9	Unmodified	_RSFDLGRQF_					0	0	0		nc|ENSG00000214160|Q92685-2|ALG3;ENSG00000214160|ENST00000397676|ALG3	nc|ENSG00000214160|Q92685-2|ALG3	nc|ENSG00000214160|Q92685-2|ALG3	MULTI-SECPEP	A375_MHC_IP_R1	1	376.2648620605469	3	375.86484	1124.57269	0.84334	0.00031698	-0.69103	-0.00025973	0.15231	5.7249E-05	375.8645635450458	49.038	0.76025	49.038	48.729	49.49	0					29	14	3	0	0	0	0.67121	1	17298	17298		24.957	19.174	1	9399800			45050	9607	32933	33198	43978	43978					0.01538779423322012
RSFDLGRQF	9	Unmodified	_RSFDLGRQF_					0	0	0		nc|ENSG00000214160|Q92685-2|ALG3;ENSG00000214160|ENST00000397676|ALG3	nc|ENSG00000214160|Q92685-2|ALG3	nc|ENSG00000214160|Q92685-2|ALG3	MULTI-SECPEP	A375_MHC_IP_R2	2	376.2646484375	3	375.86484	1124.57269	0.34087	0.00012812	-0.35867	-0.00013481	-0.0178	-6.6906E-06	375.86467365669256	48.106	0.9087	48.868	48.632	49.54	0.76128					38	17	3	0	0	0	0.21838	1	18047	18047		53.47	31.879	1	13236000			45051	9607	32933	33198	43979	43979					0.01538779423322012
RSFDLGRQF	9	Unmodified	_RSFDLGRQF_					0	0	0		nc|ENSG00000214160|Q92685-2|ALG3;ENSG00000214160|ENST00000397676|ALG3	nc|ENSG00000214160|Q92685-2|ALG3	nc|ENSG00000214160|Q92685-2|ALG3	MULTI-SECPEP	A375_MHC_IP_R2	2	563.6931762695312	2	563.293622	1124.57269	-0.44562	-0.00025101	-0.22664	-0.00012766	-0.67226	-0.00037868	563.2934099441386	48.13	0.70445	48.891	48.632	49.336	0.76127					33	13	3	0	0	0	0.24655	1	18057	18057		47.732	29.586	1	14411000			45052	9607	32933	33198	43980	43980					0.01538779423322012
RSFEAEINY	9	Unmodified	_RSFEAEINY_					0	0	0		nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19;nc|ENSG00000172046|O94966-2|USP19;nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19	nc|ENSG00000172046|O94966-7|USP19	nc|ENSG00000172046|O94966-7|USP19	MULTI-SECPEP	A375_MHC_IP_R2	2	565.1689453125	2	564.769645	1127.52474	-1.003	-0.00056647	-0.16488	-9.3122E-05	-1.1679	-0.0006596	564.7695997281891	53.45	0.51118	54.201	54.046	54.557	0.75105					15	9	2	0	0	0	0.40377	1	20221	20221		41.956	17.935	1	2062800			45053	7674	32934	33199	43981	43981					-0.03392339287370305
RSFHEVREF	9	Unmodified	_RSFHEVREF_					0	0	0		nc|ENSG00000143622|Q92963-2|RIT1;ENSG00000143622|ENST00000368323|RIT1;nc|ENSG00000143622|Q92963-3|RIT1	nc|ENSG00000143622|Q92963-2|RIT1	nc|ENSG00000143622|Q92963-2|RIT1	MULTI-SECPEP	A375_MHC_IP_R1	1	403.2720031738281	3	402.871995	1205.59415	-0.49552	-0.00019963	0.36223	0.00014593	-0.1333	-5.3701E-05	402.87212765804634	25.537	0.86254	25.537	25.154	26.017	0					54	16	5	0	0	0	0.015689	1	7445	7445		94.801	65.364	1	116220000			45054	5415	32935	33200	43982	43982					-0.0004183554794963129
RSFHEVREF	9	Unmodified	_RSFHEVREF_					0	0	0		nc|ENSG00000143622|Q92963-2|RIT1;ENSG00000143622|ENST00000368323|RIT1;nc|ENSG00000143622|Q92963-3|RIT1	nc|ENSG00000143622|Q92963-2|RIT1	nc|ENSG00000143622|Q92963-2|RIT1	MULTI-SECPEP	A375_MHC_IP_R2	2	403.2720642089844	3	402.871995	1205.59415	-0.38932	-0.00015685	-0.17043	-6.866E-05	-0.55975	-0.00022551	402.871879795201	24.796	0.96762	25.439	25.11	26.078	0.64368					52	18	4	0	0	0	0.011465	1	8185	8185		97.284	67.847	1	98593000			45055	5415	32935	33200	43983	43983					-0.0004183554794963129
RSFIFKGEDNW	11	Unmodified	_RSFIFKGEDNW_					0	0	0		ANKRD13A|p.Y293Sfs*53|1|0.07|ENSG00000076513|chr12:110025817-110025818|-/CCAGCAAA|frameshift_variant;ENSG00000076513|ENST00000261739|ANKRD13A	ANKRD13A|p.Y293Sfs*53|1|0.07|ENSG00000076513|chr12:110025817-110025818|-/CCAGCAAA|frameshift_variant	ANKRD13A|p.Y293Sfs*53|1|0.07|ENSG00000076513|chr12:110025817-110025818|-/CCAGCAAA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	467.2977294921875	3	466.89821	1397.6728	-0.62285	-0.00029081	-0.068075	-3.1784E-05	-0.69093	-0.00032259	466.8981135140253	64.677	0.40697	65.417	65.208	65.615	0.74022					11	7	2	0	0	0	0.63149	1	24565	24565		13.622	9.5051	1	1276100			45056	141	32936	33201	43984	43984					-0.010130280335260977
RSFIFKGEDNW	11	Unmodified	_RSFIFKGEDNW_					0	0	0		ANKRD13A|p.Y293Sfs*53|1|0.07|ENSG00000076513|chr12:110025817-110025818|-/CCAGCAAA|frameshift_variant;ENSG00000076513|ENST00000261739|ANKRD13A	ANKRD13A|p.Y293Sfs*53|1|0.07|ENSG00000076513|chr12:110025817-110025818|-/CCAGCAAA|frameshift_variant	ANKRD13A|p.Y293Sfs*53|1|0.07|ENSG00000076513|chr12:110025817-110025818|-/CCAGCAAA|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	466.89821	1397.6728	-0.39604	-0.00018491	0.075418	3.5213E-05	-0.32062	-0.0001497	467.2328229538071	65.586	0.45942	65.586	65.309	65.768	0	0.084287	0.00014236	NaN	13.622	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1642800			45057	141	32936	33201							-0.010130280335260977
RSFKATKFF	9	Unmodified	_RSFKATKFF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573716.1_1_17:1581802-1582496:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	A375_MHC_IP_R1	1	378.63665771484375	3	377.881831	1130.62366	0.53421	0.00020187	0.063536	2.4009E-05	0.59775	0.00022588	377.8817362548945	38.682	0.40734	38.682	38.475	38.882	0					16	7	3	0	0	0	0.3697	1	13147	13147		48.073	28.711	1	3420000			45058	7864	32937	33202	43985	43985					0.06357728468174173
RSFLARAP	8	Unmodified	_RSFLARAP_					0	0	0			REV__ENST00000376687.3_1_X:48555050-48555188:+|nuORF	REV__ENST00000376687.3_1_X:48555050-48555188:+|nuORF	MSMS	A375_MHC_IP_R2	2	459.369384765625	2	459.269419	916.524284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.546	1	43.319	42.819	43.819	0.7724								0	0	0	0.16876	1	15829	15829		4.756	0	1		+		45059	24148	32938	33203	43986	43986					0.06268330574073389
RSFLEHSMI	9	Unmodified	_RSFLEHSMI_					0	0	0			REV__nc|ENSG00000263155|P0CAP1-5|MYZAP	REV__nc|ENSG00000263155|P0CAP1-5|MYZAP	MULTI-MSMS	A375_MHC_IP_R1	1	374.2441101074219	3	373.858698	1118.55426	0.43014	0.00016081	-0.38868	-0.00014531	0.041463	1.5501E-05	373.8586106761249	20.37	0.35563	20.37	20.18	20.536	0					11	6	2	0	0	0	0.55471	1	5224	5224		12.175	4.2293	1	900700	+		45060	27537	32939	33204	43987	43987					-0.00027098542886960786
RSFNIVDI	8	Unmodified	_RSFNIVDI_					0	0	0		ENST00000472664.1_10:133757603-133758980:+|nuORF;ENST00000517754.1_1_8:26218621-26220417:+|nuORF;ENST00000490777.2_10:133754324-133769464:+|nuORF;nc|ENSG00000074211|Q9Y2T4-3|PPP2R2C;nc|ENSG00000074211|Q9Y2T4-4|PPP2R2C;nc|ENSG00000074211|Q9Y2T4-2|PPP2R2C;ENSG00000221914|ENST00000380737|PPP2R2A;ENSG00000074211|ENST00000382599|PPP2R2C;ENSG00000175470|ENST00000455566|PPP2R2D;nc|ENSG00000221914|P63151-2|PPP2R2A	ENST00000472664.1_10:133757603-133758980:+|nuORF	ENST00000472664.1_10:133757603-133758980:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	482.666015625	2	482.266542	962.51853	-0.48418	-0.00023351	-0.39944	-0.00019264	-0.88363	-0.00042614	482.26628190966215	80.33	0.65847	80.33	80.086	80.744	0					14	12	2	0	0	0	0.74098	1	29348	29348		22.736	0.98964	1	2074700			45061	1578	32940	33205	43988	43988					0.03577187271753246
RSFNMPSL	8	Unmodified	_RSFNMPSL_					0	0	0		nc|ENSG00000150527|Q96PC5-11|MIA2;nc|ENSG00000150527|Q96PC5-13|MIA2;nc|ENSG00000150527|Q96PC5-5|MIA2;nc|ENSG00000150527|Q96PC5-8|MIA2;nc|ENSG00000150527|Q96PC5-10|MIA2;nc|ENSG00000150527|Q96PC5-9|MIA2;nc|ENSG00000150527|Q96PC5-14|MIA2;nc|ENSG00000150527|Q96PC5-7|MIA2;nc|ENSG00000150527|Q96PC5-12|MIA2;ENSG00000150527|ENST00000640607|MIA2;ENST00000416709.1_1_6:168687664-168688738:-|nuORF;CTAGE1|p.M620I|1|0.56|ENSG00000212710|chr18:22415952-22415952|C/T|missense_variant;ENST00000451540.1_1_13:75812162-75812900:-|nuORF;ENSG00000212710|ENST00000391403|CTAGE1	nc|ENSG00000150527|Q96PC5-11|MIA2	nc|ENSG00000150527|Q96PC5-11|MIA2	MULTI-MSMS	A375_MHC_IP_R2	2	476.6396179199219	2	476.23947	950.464386	-0.5967	-0.00028417	0.72568	0.0003456	0.12898	6.1426E-05	476.23994288995965	66.915	0.66053	67.652	67.29	67.951	0.73631					19	12	2	0	0	0	0.33238	1	25385	25385		56.177	2.6015	1	1836900			45062	5848	32941	33206	43989	43989					-0.012827281514546485
RSFNWMLM	8	Unmodified	_RSFNWMLM_					0	0	0			REV__ENST00000296755.11_1_5:71499440-71499539:+|nuORF	REV__ENST00000296755.11_1_5:71499440-71499539:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	362.6328125	3	362.17374	1083.49939	0.42285	0.00015315	-1.2903	-0.0004673	-0.8674	-0.00031415	362.1731982847997	22.896	0.55417	22.896	22.52	23.074	0					13	10	2	0	0	0	0.972	1	6116	6116		5.7319	5.7319	1	680570	+		45063	23392	32942	33207	43990	43990					-0.03901808615160007
RSFPGFQAF	9	Unmodified	_RSFPGFQAF_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-SECPEP	A375_MHC_IP_R1	1	528.6387939453125	2	528.766709	1055.51886	-0.74633	-0.00039463	0.20532	0.00010857	-0.541	-0.00028606	528.7666944791122	85.488	1.1674	85.488	84.904	86.072	0					57	22	3	0	0	0	0.34544	1	31288	31288		61.602	43.467	1	19300000			45064	7646	32943	33208	43991	43991					-0.006673930083934465
RSFPGFQAF	9	Unmodified	_RSFPGFQAF_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	A375_MHC_IP_R2	2	529.1663208007812	2	528.766709	1055.51886	-0.43416	-0.00022957	-0.11031	-5.8326E-05	-0.54447	-0.0002879	528.7664898639149	84.697	1.068	85.433	84.916	85.984	0.73602					63	20	4	0	0	0	0.035419	3	32096	32096;32322;32385		70.332	30.375	1	17971000			45065	7646	32943	33208	43992;43993;43994	43992					-0.006673930083934465
RSFPGSKEY	9	Unmodified	_RSFPGSKEY_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	358.2402038574219	3	357.513696	1069.51926	0.31818	0.00011376	-0.55902	-0.00019986	-0.24084	-8.6103E-05	357.51344756035337	21.596	1.0149	21.596	21.098	22.113	0					60	19	5	0	0	0	0.16237	1	5639	5639		38.559	17.688	1	18432000			45066	1791	32944	33209	43995	43995					-0.012720180791802704
RSFPGSKEY	9	Unmodified	_RSFPGSKEY_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	358.29730224609375	3	357.513696	1069.51926	0.28604	0.00010226	-0.21902	-7.8304E-05	0.067016	2.3959E-05	357.5135533127912	22.898	1.3692	22.898	22.164	23.533	0					59	26	4	0	0	0	0.33896	1	6123	6123		25.997	17.842	1	19330000			45067	1791	32944	33209	43996	43996					-0.012720180791802704
RSFPGSKEY	9	Unmodified	_RSFPGSKEY_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	535.1630859375	2	535.766906	1069.51926	-0.43687	-0.00023406	-0.23368	-0.0001252	-0.67054	-0.00035925	535.7667427585296	21.647	1.0651	21.647	21.048	22.113	0					64	20	4	0	0	0	0.040539	1	5768	5768		81.915	39.821	1	42809000			45068	1791	32944	33209	43997	43997					-0.012720180791802704
RSFPGSKEY	9	Unmodified	_RSFPGSKEY_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1502685546875	2	535.766906	1069.51926	-0.88387	-0.00047355	1.428	0.00076505	0.54408	0.0002915	535.7670910921452	23.311	0.81489	23.311	23.074	23.889	0					46	15	5	0	0	0	0.4465	1	6460	6460		38.176	10.547	1	21487000			45069	1791	32944	33209	43998	43998					-0.012720180791802704
RSFPGSKEY	9	Unmodified	_RSFPGSKEY_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1668090820312	2	535.766906	1069.51926	-0.43093	-0.00023088	0.12459	6.6752E-05	-0.30634	-0.00016413	535.7669376557091	22.913	1.0118	22.913	22.113	23.125	0					57	19	4	0	0	0	0.064556	1	6238	6238		77.049	12.812	1	38762000			45070	1791	32944	33209	43999	43999					-0.012720180791802704
RSFPGSKEY	9	Unmodified	_RSFPGSKEY_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	A375_MHC_IP_R2	2	536.937255859375	2	535.766906	1069.51926	-1.1626	-0.00062289	0.13682	7.3306E-05	-1.0258	-0.00054958	535.766931726247	19.984	1.826	20.595	19.993	21.819	0.61029					119	35	4	0	0	0	0.085252	1	6315	6315		53.317	26.433	1	33206000			45071	1791	32944	33209	44000	44000					-0.012720180791802704
RSFPGSKEY	9	Unmodified	_RSFPGSKEY_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	A375_MHC_IP_R2	2	357.4491271972656	3	357.513696	1069.51926	-0.52711	-0.00018845	-0.096158	-3.4378E-05	-0.62327	-0.00022283	357.5136297192326	19.964	1.9273	20.574	19.892	21.819	0.61029					111	37	4	0	0	0	0.3489	1	6403	6403		20.871	11.107	1	19494000			45072	1791	32944	33209	44001	44001					-0.012720180791802704
RSFPSVREL	9	Unmodified	_RSFPSVREL_					0	0	0		ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	MULTI-MSMS	A375_MHC_IP_R1	1	546.2032470703125	2	545.803823	1089.59309	-0.4784	-0.00026111	0.059249	3.2338E-05	-0.41915	-0.00022877	545.8038711967587	43.578	0.81274	43.578	43.3	44.113	0					50	15	4	0	0	0	0.026372	2	15115	15110;15115		78.06	19.784	1	196160000			45073	2599	32945	33210	44002;44003	44003					0.051879500831546466
RSFPSVREL	9	Unmodified	_RSFPSVREL_					0	0	0		ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	MULTI-SECPEP	A375_MHC_IP_R1	1	364.6048889160156	3	364.204974	1089.59309	0.26554	9.6709E-05	-0.31709	-0.00011548	-0.051551	-1.8775E-05	364.2048445848488	43.577	0.81307	43.577	43.146	43.959	0					49	15	6	0	0	0	0.078412	1	15140	15140		74.772	27.04	1	44498000			45074	2599	32945	33210	44004	44004					0.051879500831546466
RSFPSVREL	9	Unmodified	_RSFPSVREL_					0	0	0		ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	MULTI-MSMS	A375_MHC_IP_R2	2	546.203369140625	2	545.803823	1089.59309	-0.7277	-0.00039718	-0.052983	-2.8918E-05	-0.78069	-0.0004261	545.8038029363927	42.674	1.0646	43.446	43.167	44.231	0.7724					58	20	5	0	0	0	0.009815	1	15840	15840		114.5	31.068	1	155790000			45075	2599	32945	33210	44005	44005					0.051879500831546466
RSFPSVREL	9	Unmodified	_RSFPSVREL_					0	0	0		ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	MULTI-SECPEP	A375_MHC_IP_R2	2	364.6045837402344	3	364.204974	1089.59309	0.042943	1.564E-05	-0.48243	-0.0001757	-0.43948	-0.00016006	364.20478915849344	42.675	0.60826	43.448	43.167	43.775	0.7724					45	11	5	0	0	0	0.078412	1	15863	15863		74.772	27.04	1	41776000			45076	2599	32945	33210	44006	44006					0.051879500831546466
RSFRLERFL	9	Unmodified	_RSFRLERFL_					0	0	0		nc|ENSG00000214022|Q9BWE0|REPIN1;ENSG00000214022|ENST00000489432|REPIN1	nc|ENSG00000214022|Q9BWE0|REPIN1	nc|ENSG00000214022|Q9BWE0|REPIN1	MULTI-SECPEP	A375_MHC_IP_R1	1	408.2909240722656	3	408.571768	1222.69348	-0.22693	-9.2718E-05	-0.55141	-0.00022529	-0.77834	-0.00031801	408.90575046841786	19.649	0.30509	19.649	19.471	19.776	0					10	5	2	0	0	0	0.80713	1	4909	4909		2.086	0	1	923220			45077	9599	32946	33211	44007	44007					0.09103607136808023
RSFRLPGERA	10	Unmodified	_RSFRLPGERA_					0	0	0		ENST00000231061.8_1_5:151054218-151066527:-|nuORF	ENST00000231061.8_1_5:151054218-151066527:-|nuORF	ENST00000231061.8_1_5:151054218-151066527:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	397.9595947265625	3	396.891389	1187.65234	-0.43105	-0.00017108	1.1693	0.00046408	0.73824	0.000293	396.8913449784254	20.252	0.86152	20.863	20.349	21.21	0.61029					50	16	4	0	0	0	0.70792	1	6237	6237		8.7518	0.90574	1	17366000			45078	10143	32947	33212	44008	44008					0.06601846097328234
RSFSLDIKSV	10	Unmodified	_RSFSLDIKSV_					0	0	0		ENSG00000111266|ENST00000298573|DUSP16	ENSG00000111266|ENST00000298573|DUSP16	ENSG00000111266|ENST00000298573|DUSP16	MSMS	A375_MHC_IP_R2	2	384.5875549316406	3	384.552151	1150.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.666	1	21.276	20.776	21.776	0.61029								0	0	0	0.15309	1	6452	6452		6.6235	2.5068	1				45079	2979	32948	33213	44009	44009					0.06533086051786086
RSFSRCMFFY	10	Unmodified	_RSFSRCMFFY_					0	0	0			REV__ENSG00000138271|ENST00000260843|GPR87	REV__ENSG00000138271|ENST00000260843|GPR87	MULTI-SECPEP	A375_MHC_IP_R2	2	672.2037353515625	2	672.304818	1342.59508	-1.1284	-0.0007586	1.0529	0.00070789	-0.07542	-5.0705E-05	672.3059667527409	52.305	0.40443	53.057	52.78	53.184	0.75225					18	7	3	0	0	0	0.87163	1	19676	19676		13.906	0	1	12890000	+		45080	19080	32949	33214	44010	44010					-0.06251080494917005
RSFSRSHHL	9	Unmodified	_RSFSRSHHL_					0	0	0		KLF3|p.D333H|1|0.22|ENSG00000109787|chr4:38697222-38697222|G/C|missense_variant	KLF3|p.D333H|1|0.22|ENSG00000109787|chr4:38697222-38697222|G/C|missense_variant	KLF3|p.D333H|1|0.22|ENSG00000109787|chr4:38697222-38697222|G/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	375.9284362792969	3	376.200334	1125.57917	0.2959	0.00011132	-0.44566	-0.00016766	-0.14976	-5.6338E-05	376.2000711292463	27.491	0.81182	28.169	27.996	28.808	0.67857					23	15	3	0	0	0	0.59266	1	9421	9421		15.248	0.29132	1	5047500			45081	14223	32950	33215	44011	44011					0.02140717374709311
RSFSSPENF	9	Unmodified	_RSFSSPENF_					0	0	0		ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7	ENST00000265882.5_1_2:80389676-80390174:-|nuORF	ENST00000265882.5_1_2:80389676-80390174:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1486206054688	2	535.748713	1069.48287	-0.51869	-0.00027789	0.0068655	3.6782E-06	-0.51182	-0.00027421	535.7486800164471	42.72	0.50545	42.72	42.386	42.891	0					15	9	2	0	0	0	0.36673	1	14827	14827		45.74	25.286	1	2480800			45082	1629	32951	33216	44012	44012					-0.04908894975892508
RSFSSPENF	9	Unmodified	_RSFSSPENF_					0	0	0		ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7	ENST00000265882.5_1_2:80389676-80390174:-|nuORF	ENST00000265882.5_1_2:80389676-80390174:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	536.148193359375	2	535.748713	1069.48287	-0.81269	-0.0004354	0.061007	3.2685E-05	-0.75169	-0.00040272	535.7486646075228	41.926	0.46056	42.7	42.401	42.862	0.77451					19	8	3	0	0	0	0.16595	1	15582	15582		61.602	28.816	1	3581000			45083	1629	32951	33216	44013	44013					-0.04908894975892508
RSFSTHWMLK	10	Unmodified	_RSFSTHWMLK_					0	0	0		ENST00000418559.5_1_2:183594660-183605065:+|nuORF	ENST00000418559.5_1_2:183594660-183605065:+|nuORF	ENST00000418559.5_1_2:183594660-183605065:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	431.1708984375	3	431.55713	1291.64956	0.024143	1.0419E-05	1.4338	0.00061875	1.4579	0.00062917	431.55801434026654	35.521	0.76541	35.521	35.064	35.83	0					18	14	2	0	0	0	0.93232	1	11930	11930		10.899	1.9227	1	1694900			45084	11709	32952	33217	44014	44014					0.015402546481482204
RSFSVPKKF	9	Unmodified	_RSFSVPKKF_					0	0	0		ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MULTI-SECPEP	A375_MHC_IP_R2	2	366.2817687988281	3	365.881831	1094.62366	-0.31207	-0.00011418	0.33737	0.00012344	0.025294	9.2545E-06	365.8818825741241	28.391	0.30478	29.07	28.858	29.163	0.67857					10	5	3	0	0	0	0.67539	1	9800	9800		5.0475	0	1	5707600			45085	1572	32953	33218	44015	44015					0.0801372846817685
RSFVEKHRW	9	Unmodified	_RSFVEKHRW_					0	0	0		ENSG00000164292|ENST00000379982|RHOBTB3	ENSG00000164292|ENST00000379982|RHOBTB3	ENSG00000164292|ENST00000379982|RHOBTB3	MULTI-SECPEP	A375_MHC_IP_R1	1	415.43646240234375	3	415.559751	1243.65742	0.41866	0.00017398	0.2202	9.1506E-05	0.63886	0.00026548	415.55979258735096	20.59	0.6126	20.59	20.18	20.793	0					20	11	2	0	0	0	0.63699	1	5254	5254		23.016	18.899	1	1442600			45086	6813	32954	33219	44016	44016					0.0453414995993171
RSGAFGHLF	9	Unmodified	_RSGAFGHLF_					0	0	0		nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3;chr16:89921431-89932571|440|11.67|0.7|4.06|+|ENST00000555810|TUBB3,TUBB3;TUBB3|p.G142Rfs*16|1|0.23|ENSG00000258947|chr16:89934867-89934868|-/G|frameshift_variant;TUBB3|p.R156Vfs*9|1|0.64|ENSG00000258947|chr16:89934916-89934916|G/-|frameshift_variant	nc|ENSG00000258947|Q13509-2|TUBB3	nc|ENSG00000258947|Q13509-2|TUBB3	MULTI-MSMS	A375_MHC_IP_R1	1	496.65863037109375	2	496.259051	990.503549	-0.17739	-8.8029E-05	-0.1567	-7.7761E-05	-0.33408	-0.00016579	496.2589500989578	54.039	1.9271	54.039	53.199	55.126	0					90	37	6	0	0	0	0.04447	1	19210	19210		66.457	24.362	1	143780000			45087	9924	32955	33220	44017	44017					0.007917401944382618
RSGAFGHLF	9	Unmodified	_RSGAFGHLF_					0	0	0		nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3;chr16:89921431-89932571|440|11.67|0.7|4.06|+|ENST00000555810|TUBB3,TUBB3;TUBB3|p.G142Rfs*16|1|0.23|ENSG00000258947|chr16:89934867-89934868|-/G|frameshift_variant;TUBB3|p.R156Vfs*9|1|0.64|ENSG00000258947|chr16:89934916-89934916|G/-|frameshift_variant	nc|ENSG00000258947|Q13509-2|TUBB3	nc|ENSG00000258947|Q13509-2|TUBB3	MULTI-MSMS	A375_MHC_IP_R2	2	496.658447265625	2	496.259051	990.503549	-1.0093	-0.00050086	0.042391	2.1037E-05	-0.96687	-0.00047982	496.2590475831568	52.964	2.4915	53.715	52.981	55.473	0.75105					87	48	4	0	0	0	0.029064	1	19911	19911		75.761	37.787	1	133370000			45088	9924	32955	33220	44018	44018					0.007917401944382618
RSGARSARRWA	11	Unmodified	_RSGARSARRWA_					0	0	0			REV__ENST00000426877.2_1_19:7745901-7747212:+|nuORF	REV__ENST00000426877.2_1_19:7745901-7747212:+|nuORF	MSMS	A375_MHC_IP_R1	1	425.286865234375	3	425.237671	1272.69118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.286	1	23.286	22.786	23.786	0								0	0	0	0.16258	1	6367	6367		2.4348	0.18206	1		+		45089	24657	32956	33221	44019	44019					0.06574571451710653
RSGHVSNPS	9	Unmodified	_RSGHVSNPS_					0	0	0			REV__ENSG00000131381|ENST00000253699|RBSN	REV__ENSG00000131381|ENST00000253699|RBSN	MSMS	A375_MHC_IP_R1	1	470.7998046875	2	470.733397	939.452242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.654	1	25.654	25.154	26.154	0								0	0	0	0.15486	1	7522	7522		6.2058	0.44535	1		+		45090	18600	32957	33222	44020	44020					-0.01990628570285935
RSGKERDLY	9	Unmodified	_RSGKERDLY_					0	0	0		ENST00000254323.6_1_19:13942265-13942868:+|nuORF	ENST00000254323.6_1_19:13942265-13942868:+|nuORF	ENST00000254323.6_1_19:13942265-13942868:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	562.6957397460938	2	562.296362	1122.57817	-0.51659	-0.00029048	-0.057523	-3.2345E-05	-0.57411	-0.00032282	562.2962493735816	27.496	0.35532	28.174	27.996	28.351	0.67857					9	6	2	0	0	0	0.52905	1	9449	9449		13.906	0	1	2908000			45091	10225	32958	33223	44021	44021					0.02178458215144019
RSGPFGQLF	9	Unmodified	_RSGPFGQLF_					0	0	0		ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENST00000587204.1_1_18:12308291-12311096:+|nuORF	ENST00000417736.2_1_18:12308439-12326126:+|nuORF	ENST00000417736.2_1_18:12308439-12326126:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	505.267822265625	2	504.766709	1007.51886	-0.39083	-0.00019728	0.008941	4.5131E-06	-0.38189	-0.00019277	504.76678625377235	87.673	1.6809	87.673	87.134	88.815	0					78	32	4	0	0	0	0.04699	1	32105	32105		65.474	0	1	75740000			45092	7993	32959	33224	44022	44022					0.015406069916252818
RSGPFGQLF	9	Unmodified	_RSGPFGQLF_					0	0	0		ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENST00000587204.1_1_18:12308291-12311096:+|nuORF	ENST00000417736.2_1_18:12308439-12326126:+|nuORF	ENST00000417736.2_1_18:12308439-12326126:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	505.16650390625	2	504.766709	1007.51886	-0.20991	-0.00010595	-0.19341	-9.7627E-05	-0.40332	-0.00020358	504.7666468094569	82.29	2.4335	82.29	81.707	84.141	0					133	47	5	0	0	0	0.20059	1	30168	30168		59.368	0	1	357590000			45093	7993	32959	33224	44023	44023					0.015406069916252818
RSGPFGQLF	9	Unmodified	_RSGPFGQLF_					0	0	0		ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENST00000587204.1_1_18:12308291-12311096:+|nuORF	ENST00000417736.2_1_18:12308439-12326126:+|nuORF	ENST00000417736.2_1_18:12308439-12326126:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	504.80035400390625	2	504.766709	1007.51886	-0.55984	-0.00028259	0.17232	8.6981E-05	-0.38753	-0.00019561	504.7667719495129	86.801	1.3218	87.534	86.896	88.218	0.733					80	25	5	0	0	0	0.084766	1	33021	33021		53.404	0	1	75875000			45094	7993	32959	33224	44024	44024					0.015406069916252818
RSGPFGQLF	9	Unmodified	_RSGPFGQLF_					0	0	0		ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENST00000587204.1_1_18:12308291-12311096:+|nuORF	ENST00000417736.2_1_18:12308439-12326126:+|nuORF	ENST00000417736.2_1_18:12308439-12326126:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	505.1663513183594	2	504.766709	1007.51886	-0.78154	-0.0003945	0.13445	6.7868E-05	-0.64709	-0.00032663	504.7668184185832	81.361	2.1315	82.103	81.467	83.598	0.74293					136	41	5	0	0	0	0.36673	1	30976	30976		38.615	0	1	410250000			45095	7993	32959	33224	44025	44025					0.015406069916252818
RSGSSLEW	8	Unmodified	_RSGSSLEW_					0	0	0		ENSG00000115183|ENST00000263635|TANC1;nc|ENSG00000115183|Q9C0D5-2|TANC1	ENSG00000115183|ENST00000263635|TANC1	ENSG00000115183|ENST00000263635|TANC1	MULTI-MSMS	A375_MHC_IP_R1	1	461.6247253417969	2	461.224874	920.435195	-0.5311	-0.00024495	0.45711	0.00021083	-0.073982	-3.4122E-05	461.2249544996328	41.661	0.46107	41.661	41.419	41.88	0					16	8	3	0	0	0	0.72008	1	14408	14408		28.487	0	1	2428000			45096	3279	32960	33225	44026	44026					-0.02820549176090026
RSGSSLEW	8	Unmodified	_RSGSSLEW_					0	0	0		ENSG00000115183|ENST00000263635|TANC1;nc|ENSG00000115183|Q9C0D5-2|TANC1	ENSG00000115183|ENST00000263635|TANC1	ENSG00000115183|ENST00000263635|TANC1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	461.224874	920.435195	-0.5311	-0.00024495	0.45711	0.00021083	-0.073982	-3.4122E-05	461.2249544996328	41.661	0.46107	41.661	41.419	41.88	0	0.048011	8.1936E-05	NaN	28.487	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2428000			45097	3279	32960	33225							-0.02820549176090026
RSGVIRVKQY	10	Unmodified	_RSGVIRVKQY_					0	0	0		ENST00000417982.6_1_17:53851072-53853458:+|nuORF;nc|ENSG00000141179|Q9UKL6-2|PCTP;ENSG00000141179|ENST00000268896|PCTP	ENST00000417982.6_1_17:53851072-53853458:+|nuORF	ENST00000417982.6_1_17:53851072-53853458:+|nuORF	MSMS	A375_MHC_IP_R1	1	402.6224670410156	3	402.57529	1204.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.971	1	21.971	21.471	22.471	0								0	0	0	0.15496	1	5847	5847		4.7159	0	1				45098	5219	32961	33226	44027	44027					0.10987589791216124
RSHKIVEALEK	11	Unmodified	_RSHKIVEALEK_					0	0	0			REV__ENSG00000184305|ENST00000509176|CCSER1	REV__ENSG00000184305|ENST00000509176|CCSER1	MULTI-MSMS	A375_MHC_IP_R2	2	437.6571350097656	3	437.257738	1308.75138	-0.10408	-4.5508E-05	-0.76946	-0.00033645	-0.87353	-0.00038196	437.5916990512493	137.65	1.1674	137.73	137.45	138.62	0.083969					34	22	3	0	0	0	0.73809	1	54018	54018		0.40827	0	1	3252000	+		45099	21807	32962	33227	44028	44028					0.10935824271541605
RSHKRKHRIL	10	Unmodified	_RSHKRKHRIL_					0	0	0			REV__nc|ENSG00000125846|P52736-3|ZNF133	REV__nc|ENSG00000125846|P52736-3|ZNF133	MSMS	A375_MHC_IP_R2	2	665.8187255859375	2	665.918178	1329.8218	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.64	1	136.75	136.25	137.25	0.11134								0	0	0	0.15596	1	53664	53664		1.4819	0.15237	1		+		45100	18368	32963	33228	44029	44029					0.1700858717056235
RSHLLVLV	8	Unmodified	_RSHLLVLV_					0	0	0		ENST00000272793.9_1_2:170734066-170735040:+|nuORF	ENST00000272793.9_1_2:170734066-170735040:+|nuORF	ENST00000272793.9_1_2:170734066-170735040:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	469.2026062011719	2	468.803094	935.591636	-0.93582	-0.00043872	0.23724	0.00011122	-0.69858	-0.0003275	468.8031814613566	60.214	0.91508	60.96	60.652	61.567	0.7459					56	17	5	0	0	0	0.81376	1	22734	22734		32.305	0	1	128290000			45101	10389	32964	33229	44030	44030					0.12126360785043744
RSIDLNRLI	9	Unmodified	_RSIDLNRLI_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2	MULTI-MSMS	A375_MHC_IP_R1	1	367.6243896484375	3	367.224257	1098.65094	-0.077682	-2.8527E-05	0.76615	0.00028135	0.68846	0.00025282	367.22436945088475	68.319	0.50809	68.319	68.006	68.514	0					20	9	3	0	0	0	0.6894	1	24749	24749		7.9454	1.315	1	2383100			45102	1269;9999;14937	32965	33230	44031	44031					0.10556212008577859
RSIDLNRLI	9	Unmodified	_RSIDLNRLI_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	367.6242370605469	3	367.224257	1098.65094	0.14082	5.1712E-05	-0.029409	-1.08E-05	0.11141	4.0913E-05	367.22424504673995	67.306	0.71059	68.043	67.75	68.461	0.73631					16	13	2	0	0	0	0.39266	1	25516	25516		39.923	5.7012	1	2935400			45103	1269;9999;14937	32965	33230	44032	44032					0.10556212008577859
RSIHLAKAK	9	Unmodified	_RSIHLAKAK_					0	0	0			REV__ENSG00000176208|ENST00000321990|ATAD5	REV__ENSG00000176208|ENST00000321990|ATAD5	MSMS	A375_MHC_IP_R2	2	512.3706665039062	2	512.324725	1022.6349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.09	1	143.12	142.62	143.62	0.030731								0	0	0	0.15486	1	55931	55931		1.8442	0	1		+		45104	21394	32966	33231	44033	44033					0.12448550562316996
RSIILTHV	8	Unmodified	_RSIILTHV_					0	0	0		ENSG00000155849|ENST00000310758|ELMO1;ELMO1|p.R281Q|1|0.48|ENSG00000155849|chr7:37213447-37213447|C/T|missense_variant;ENST00000487336.1_1_7:37172686-37264491:-|nuORF	ENSG00000155849|ENST00000310758|ELMO1	ENSG00000155849|ENST00000310758|ELMO1	MULTI-MSMS	A375_MHC_IP_R1	1	470.1923828125	2	469.792727	937.5709	-0.2239	-0.00010519	0.13064	6.1375E-05	-0.093254	-4.381E-05	469.792706399555	40.563	0.50782	40.563	40.355	40.863	0					26	9	4	0	0	0	0.16945	1	13936	13936		71.922	21.989	1	16631000			45105	6159	32967	33232	44034	44034					0.09961770405357129
RSIILTHV	8	Unmodified	_RSIILTHV_					0	0	0		ENSG00000155849|ENST00000310758|ELMO1;ELMO1|p.R281Q|1|0.48|ENSG00000155849|chr7:37213447-37213447|C/T|missense_variant;ENST00000487336.1_1_7:37172686-37264491:-|nuORF	ENSG00000155849|ENST00000310758|ELMO1	ENSG00000155849|ENST00000310758|ELMO1	MULTI-MSMS	A375_MHC_IP_R2	2	470.19244384765625	2	469.792727	937.5709	-0.64031	-0.00030081	0.23373	0.00010981	-0.40658	-0.00019101	469.7928022015751	39.571	0.50792	40.345	40.118	40.626	0.77451					25	9	4	0	0	0	0.6833	1	14589	14589		39.95	11.463	1	16958000			45106	6159	32967	33232	44035	44035					0.09961770405357129
RSIISPNFSF	10	Unmodified	_RSIISPNFSF_					0	0	0		ENSG00000120129|ENST00000239223|DUSP1;ENSG00000120875|ENST00000240100|DUSP4;nc|ENSG00000120875|Q13115-2|DUSP4;chr8:29340243-29345370|445|10.06|0.62|4.03|-|ENST00000240101|DUSP4,DUSP4	ENSG00000120129|ENST00000239223|DUSP1;ENSG00000120875|ENST00000240100|DUSP4	ENSG00000120129|ENST00000239223|DUSP1	MULTI-MSMS	A375_MHC_IP_R1	1	584.71240234375	2	584.31148	1166.60841	-0.38181	-0.00022309	1.0238	0.00059823	0.64201	0.00037513	584.3126033159906	94.998	0.45877	94.998	94.752	95.211	0					19	8	3	0	0	0	0.084058	1	34934	34934		67.081	35.812	1	3145200			45107	3650;3692	32968	33233	44036	44036					0.031768168803409935
RSIISPNFSF	10	Unmodified	_RSIISPNFSF_					0	0	0		ENSG00000120129|ENST00000239223|DUSP1;ENSG00000120875|ENST00000240100|DUSP4;nc|ENSG00000120875|Q13115-2|DUSP4;chr8:29340243-29345370|445|10.06|0.62|4.03|-|ENST00000240101|DUSP4,DUSP4	ENSG00000120129|ENST00000239223|DUSP1;ENSG00000120875|ENST00000240100|DUSP4	ENSG00000120129|ENST00000239223|DUSP1	MULTI-SECPEP	A375_MHC_IP_R2	2	584.711669921875	2	584.31148	1166.60841	-0.26054	-0.00015224	1.3322	0.00077844	1.0717	0.00062621	584.3123368041341	94.196	0.70918	94.94	94.515	95.224	0.74473					16	11	2	0	0	0	0.52647	1	35785	35785		47.732	17.507	1	2401100			45108	3650;3692	32968	33233	44037	44037					0.031768168803409935
RSIKIPVKKF	10	Unmodified	_RSIKIPVKKF_					0	0	0		ENSG00000176018|ENST00000315948|LYSMD3	ENSG00000176018|ENST00000315948|LYSMD3	ENSG00000176018|ENST00000315948|LYSMD3	MULTI-MSMS	A375_MHC_IP_R1	1	406.33587646484375	3	405.936047	1214.78631	-0.41764	-0.00016954	0.38176	0.00015497	-0.035879	-1.4565E-05	405.9361433304243	27.489	0.50517	27.489	27.229	27.735	0					22	9	3	0	0	0	0.29004	2	8368	8279;8368		40.714	29.815	1	4387400			45109	7994	32969	33234	44038;44039	44039					0.18751111870165005
RSIKIPVKKF	10	Unmodified	_RSIKIPVKKF_					0	0	0		ENSG00000176018|ENST00000315948|LYSMD3	ENSG00000176018|ENST00000315948|LYSMD3	ENSG00000176018|ENST00000315948|LYSMD3	MULTI-MSMS	A375_MHC_IP_R2	2	406.3358459472656	3	405.936047	1214.78631	-0.32383	-0.00013145	-0.0035693	-1.4489E-06	-0.3274	-0.0001329	405.936022389093	26.694	0.45909	27.354	27.109	27.568	0.65992					15	8	2	0	0	0	0.64407	1	9105	9105		17.572	15.289	1	2499700			45110	7994	32969	33234	44040	44040					0.18751111870165005
RSIPAITRY	9	Unmodified	_RSIPAITRY_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-SECPEP	A375_MHC_IP_R1	1	539.2141723632812	2	538.81419	1075.61383	-0.46204	-0.00024895	-2.782	-0.001499	-3.244	-0.0017479	538.8161325740955	35.587	0.76589	35.587	35.116	35.881	0					48	14	5	0	0	0	0.656	1	11755	11755		19.626	8.802	1	10482000			45111	4851	32970	33235	44041	44041					0.07904540462777732
RSIPMTVDF	9	Unmodified	_RSIPMTVDF_					0	0	0		ENSG00000165704|ENST00000298556|HPRT1	ENSG00000165704|ENST00000298556|HPRT1	ENSG00000165704|ENST00000298556|HPRT1	MULTI-MSMS	A375_MHC_IP_R2	2	533.6741333007812	2	533.273509	1064.53247	-0.74221	-0.0003958	-3.3982	-0.0018122	-4.1404	-0.002208	533.2724529364648	77.059	1.2179	77.802	77.354	78.572	0.74293					47	23	3	0	0	0	0.54799	1	29186	29186		17.443	1.6744	1	3528300			45112	6983	32971	33236	44042	44042					0.00278096708530029
RSIPVLAKW	9	Unmodified	_RSIPVLAKW_					0	0	0		ENST00000521628.1_1_8:48962382-48973385:+|nuORF;ENSG00000169139|ENST00000523111|UBE2V2;KIAA0146-UBE2V2|1|fusion	ENST00000521628.1_1_8:48962382-48973385:+|nuORF	ENST00000521628.1_1_8:48962382-48973385:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	535.7288818359375	2	535.329476	1068.6444	-0.67374	-0.00036067	0.13598	7.2795E-05	-0.53776	-0.00028788	535.3295056084534	61.808	0.61354	61.808	61.483	62.097	0					17	11	2	0	0	0	0.73926	1	22315	22315		12.873	2.0731	1	2351900			45113	7384	32972	33237	44043	44043					0.11282318847838724
RSIQQNIQY	9	Unmodified	_RSIQQNIQY_					0	0	0		ENSG00000126368|ENST00000246672|NR1D1;ENST00000468700.1_1_3:23996209-24001320:+|nuORF;ENSG00000174738|ENST00000312521|NR1D2;ENST00000492552.5_1_3:23987629-24018907:+|nuORF	ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	MULTI-MSMS	A375_MHC_IP_R1	1	575.7039794921875	2	575.304187	1148.59382	-0.26244	-0.00015098	-0.31652	-0.0001821	-0.57896	-0.00033308	575.3039252460349	34.431	0.40431	34.431	34.253	34.657	0					13	7	2	0	0	0	0.2415	1	11386	11386		34.932	13.395	1	2699000			45114	4039	32973	33238	44044	44044					0.025467447321943837
RSKEGLTERF	10	Unmodified	_RSKEGLTERF_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-MSMS	A375_MHC_IP_R1	1	408.6228332519531	3	408.222805	1221.64658	0.13338	5.4447E-05	-0.57999	-0.00023677	-0.44662	-0.00018232	408.22279348574125	21.704	0.45705	21.704	21.505	21.962	0					25	8	4	0	0	0	0.01042	1	5736	5736		81.923	57.959	1	9005000			45115	1382	32974	33239	44045	44045					0.044627027949900366
RSKERHREHRR	11	Unmodified	_RSKERHREHRR_					0	0	0		nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13	nc|ENSG00000065883|Q14004-2|CDK13	nc|ENSG00000065883|Q14004-2|CDK13	MULTI-SECPEP	A375_MHC_IP_R1	1	515.6427612304688	3	516.289317	1545.84612	-0.80454	-0.00041537	0.0031795	1.6416E-06	-0.80136	-0.00041373	516.2892760492782	133.96	0.5081	133.96	133.76	134.27	0					15	9	2	0	0	0	1.0015	1	51739	51739		0	0	1	2700800			45116	1394	32975	33240	44046	44046					0.09503195586125912
RSKESLVSF	9	Unmodified	_RSKESLVSF_					0	0	0		nc|ENSG00000077232|Q8IXB1-3|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10;ENST00000459930.1_1_2:183594580-183597320:+|nuORF;nc|ENSG00000077232|Q8IXB1-2|DNAJC10	nc|ENSG00000077232|Q8IXB1-3|DNAJC10	nc|ENSG00000077232|Q8IXB1-3|DNAJC10	MULTI-SECPEP	A375_MHC_IP_R1	1	352.28900146484375	3	351.529346	1051.56621	-0.097522	-3.4282E-05	0.032061	1.127E-05	-0.065461	-2.3011E-05	351.52933249503275	39.415	0.65924	39.415	39.085	39.744	0					38	12	4	0	0	0	0.30925	1	13464	13464		39.213	19.587	1	53771000			45117	1648	32976	33241	44047	44047					0.042488414719628054
RSKESLVSF	9	Unmodified	_RSKESLVSF_					0	0	0		nc|ENSG00000077232|Q8IXB1-3|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10;ENST00000459930.1_1_2:183594580-183597320:+|nuORF;nc|ENSG00000077232|Q8IXB1-2|DNAJC10	nc|ENSG00000077232|Q8IXB1-3|DNAJC10	nc|ENSG00000077232|Q8IXB1-3|DNAJC10	MULTI-SECPEP	A375_MHC_IP_R1	1	527.1530151367188	2	526.790381	1051.56621	-0.48639	-0.00025623	-0.52584	-0.00027701	-1.0122	-0.00053323	526.7903530588629	39.394	0.81159	39.394	39.085	39.896	0					47	15	4	0	0	0	0.13244	1	13463	13463		51.415	0	1	76037000			45118	1648	32976	33241	44048	44048					0.042488414719628054
RSKESLVSF	9	Unmodified	_RSKESLVSF_					0	0	0		nc|ENSG00000077232|Q8IXB1-3|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10;ENST00000459930.1_1_2:183594580-183597320:+|nuORF;nc|ENSG00000077232|Q8IXB1-2|DNAJC10	nc|ENSG00000077232|Q8IXB1-3|DNAJC10	nc|ENSG00000077232|Q8IXB1-3|DNAJC10	MULTI-SECPEP	A375_MHC_IP_R2	2	351.9292907714844	3	351.529346	1051.56621	-0.60823	-0.00021381	0.01275	4.4821E-06	-0.59548	-0.00020933	351.5293419489388	38.368	1.0709	39.142	38.843	39.914	0.77451					32	20	2	0	0	0	0.13208	1	14083	14083		53.317	11.004	1	52166000			45119	1648	32976	33241	44049	44049					0.042488414719628054
RSKESLVSF	9	Unmodified	_RSKESLVSF_					0	0	0		nc|ENSG00000077232|Q8IXB1-3|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10;ENST00000459930.1_1_2:183594580-183597320:+|nuORF;nc|ENSG00000077232|Q8IXB1-2|DNAJC10	nc|ENSG00000077232|Q8IXB1-3|DNAJC10	nc|ENSG00000077232|Q8IXB1-3|DNAJC10	MULTI-SECPEP	A375_MHC_IP_R2	2	527.1900634765625	2	526.790381	1051.56621	-0.82777	-0.00043606	-0.68448	-0.00036058	-1.5123	-0.00079664	526.7903108081694	38.395	1.0709	39.17	38.843	39.914	0.77451					53	20	4	0	0	0	0.20059	1	14069	14069		51.415	13.24	1	62031000			45120	1648	32976	33241	44050	44050					0.042488414719628054
RSKESVPEF	9	Unmodified	_RSKESVPEF_					0	0	0		ENST00000485226.1_1_1:26227942-26230296:-|nuORF;ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26229981-26231212:-|nuORF	ENST00000485226.1_1_1:26227942-26230296:-|nuORF	ENST00000485226.1_1_1:26227942-26230296:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	360.588623046875	3	360.189101	1077.54547	-0.24017	-8.6505E-05	-0.65772	-0.0002369	-0.89789	-0.00032341	360.1889416506942	27.849	0.35546	28.528	28.401	28.757	0.67857					13	6	3	0	0	0	0.65527	1	9591	9591		16.566	2.1605	1	4124800			45121	3503	32977	33242	44051	44051					0.009802510922781948
RSKGYGFITF	10	Unmodified	_RSKGYGFITF_					0	0	0		nc|ENSG00000100461|Q86U06-4|RBM23;nc|ENSG00000100461|Q86U06-5|RBM23;nc|ENSG00000100461|Q86U06-2|RBM23;ENSG00000100461|ENST00000359890|RBM23;ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF;nc|ENSG00000131051|Q14498-3|RBM39;nc|ENSG00000131051|Q14498-2|RBM39;ENSG00000131051|ENST00000253363|RBM39;ENST00000397254.2_1_X:43889279-43890164:+|nuORF	nc|ENSG00000100461|Q86U06-4|RBM23;ENST00000492779.5_1_20:34292405-34320086:-|nuORF	ENST00000492779.5_1_20:34292405-34320086:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	392.9451599121094	3	392.545108	1174.61349	-0.10001	-3.9258E-05	0.14698	5.7698E-05	0.046975	1.844E-05	392.5451114724252	67.99	0.50845	68.725	68.459	68.968	0.73511					20	9	3	0	0	0	0.76274	1	25760	25760		25.997	5.5829	1	2134800			45122	4304;2181	32978	33243	44052	44052					0.0331712074294046
RSKIAETF	8	Unmodified	_RSKIAETF_					0	0	0		nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	MULTI-MSMS	A375_MHC_IP_R1	1	476.6658630371094	2	476.266542	950.51853	-0.85374	-0.00040661	0.27016	0.00012867	-0.58358	-0.00027794	476.26661245850283	26.448	0.6567	26.448	26.221	26.878	0					30	12	3	0	0	0	0.23934	1	7873	7873		63.961	15.615	1	50966000			45123	1019	32979	33244	44053	44053					0.04129187271769297
RSKIAETF	8	Unmodified	_RSKIAETF_					0	0	0		nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	MULTI-MSMS	A375_MHC_IP_R2	2	476.6660461425781	2	476.266542	950.51853	-0.98319	-0.00046826	0.23581	0.00011231	-0.74738	-0.00035595	476.2665839625885	25.717	0.81343	26.377	26.144	26.957	0.65992					37	15	4	0	0	0	0.43631	1	8608	8608		51.63	3.284	1	20967000			45124	1019	32979	33244	44054	44054					0.04129187271769297
RSKKRRRRLSK	11	Unmodified	_RSKKRRRRLSK_					0	0	0		ENST00000421536.5_1_2:187351098-187359978:+|nuORF	ENST00000421536.5_1_2:187351098-187359978:+|nuORF	ENST00000421536.5_1_2:187351098-187359978:+|nuORF	MSMS	A375_MHC_IP_R2	2	735.9808959960938	2	735.981841	1469.94913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.9	1	118.5	118	119	0.60909								0	0	0	0.16337	1	44683	44683		1.1933	1.1933	1				45125	11739	32980	33245	44055	44055					0.23295308044748708
RSKKRTKR	8	Unmodified	_RSKKRTKR_					0	0	0		ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENST00000519868.1_1_5:169502602-169506159:+|nuORF;ENST00000520450.5_1_5:169484535-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2	ENSG00000134516|ENST00000520908|DOCK2	MSMS	A375_MHC_IP_R1	1	353.7779541015625	3	353.900108	1058.67849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.036	1	17.036	16.536	17.536	0								0	0	0	0.16876	1	3985	3985		0	0	1				45126	4583	32981	33246	44056	44056					0.15150160059465634
RSKLNPQQF	9	Unmodified	_RSKLNPQQF_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;ENST00000525431.1_1_11:125476222-125478225:+|nuORF	ENSG00000134910|ENST00000392708|STT3A	ENSG00000134910|ENST00000392708|STT3A	MULTI-MSMS	A375_MHC_IP_R1	1	373.6084289550781	3	373.208607	1116.60399	0.326	0.00012166	-0.49292	-0.00018396	-0.16692	-6.2296E-05	373.2082657783772	25.28	0.71237	25.28	25.053	25.765	0					31	13	3	0	0	0	0.53943	2	7358	7307;7358		17.863	6.3685	1	16282000			45127	4626	32982	33247	44057;44058	44058					0.050353524574120456
RSKLNPQQF	9	Unmodified	_RSKLNPQQF_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;ENST00000525431.1_1_11:125476222-125478225:+|nuORF	ENSG00000134910|ENST00000392708|STT3A	ENSG00000134910|ENST00000392708|STT3A	MULTI-SECPEP	A375_MHC_IP_R1	1	559.708740234375	2	559.309272	1116.60399	-0.49584	-0.00027733	-0.18206	-0.00010183	-0.6779	-0.00037915	559.3090943373708	25.28	0.55976	25.28	25.154	25.714	0					18	10	2	0	0	0	0.60917	1	7363	7363		25.399	9.5521	1	8079400			45128	4626	32982	33247	44059	44059					0.050353524574120456
RSKLNPQQF	9	Unmodified	_RSKLNPQQF_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;ENST00000525431.1_1_11:125476222-125478225:+|nuORF	ENSG00000134910|ENST00000392708|STT3A	ENSG00000134910|ENST00000392708|STT3A	MULTI-MSMS	A375_MHC_IP_R2	2	373.6083068847656	3	373.208607	1116.60399	0.051526	1.923E-05	-0.51693	-0.00019292	-0.4654	-0.00017369	373.20839673601836	24.594	0.55831	25.237	25.11	25.668	0.64368					19	10	2	0	0	0	0.53943	1	8112	8112		17.863	10.761	1	17663000			45129	4626	32982	33247	44060	44060					0.050353524574120456
RSKPGPII	8	Unmodified	_RSKPGPII_					0	0	0			REV__nc|ENSG00000196091|Q00872-7|MYBPC1	REV__nc|ENSG00000196091|Q00872-7|MYBPC1	MULTI-MSMS	A375_MHC_IP_R2	2	435.2822570800781	2	434.27417	866.533787	-0.19771	-8.5861E-05	-0.1264	-5.4891E-05	-0.32411	-0.00014075	434.27412902111564	63.68	1.628	64.42	63.936	65.564	0.74022					109	31	5	0	0	0	0.77123	1	24467	24467		14.582	0	1	278460000	+		45130	27433	32983	33248	44061	44061					0.09518098859621205
RSKRALKQF	9	Unmodified	_RSKRALKQF_					0	0	0		ENSG00000185010|ENST00000360256|F8	ENSG00000185010|ENST00000360256|F8	ENSG00000185010|ENST00000360256|F8	MULTI-MSMS	A375_MHC_IP_R2	2	378.9580078125	3	378.568247	1132.68291	-0.22104	-8.368E-05	0.1397	5.2887E-05	-0.081339	-3.0792E-05	378.56830319041813	21.23	0.86116	21.849	21.169	22.03	0.61932					41	16	3	0	0	0	0.70411	1	6480	6480		6.6304	2.4409	1	3364000			45131	8631	32984	33249	44062	44062					0.1218762448236248
RSLASQFKY	9	Unmodified	_RSLASQFKY_					0	0	0		ENSG00000108591|ENST00000225729|DRG2;ENST00000467099.6_1_17:18003545-18010551:+|nuORF;ENST00000497744.1_1_17:18007908-18010551:+|nuORF	ENSG00000108591|ENST00000225729|DRG2	ENSG00000108591|ENST00000225729|DRG2	MULTI-SECPEP	A375_MHC_IP_R1	1	550.6983032226562	2	550.298373	1098.58219	-0.62143	-0.00034197	0.29428	0.00016194	-0.32715	-0.00018003	550.2985667513038	37.025	0.50405	37.025	36.745	37.249	0					22	9	3	0	0	0	0.16237	1	12440	12440		55.235	20.833	1	8095500			45132	2820	32985	33250	44063	44063					0.03684547708849095
RSLASQFKY	9	Unmodified	_RSLASQFKY_					0	0	0		ENSG00000108591|ENST00000225729|DRG2;ENST00000467099.6_1_17:18003545-18010551:+|nuORF;ENST00000497744.1_1_17:18007908-18010551:+|nuORF	ENSG00000108591|ENST00000225729|DRG2	ENSG00000108591|ENST00000225729|DRG2	MULTI-SECPEP	A375_MHC_IP_R2	2	550.697509765625	2	550.298373	1098.58219	-0.90559	-0.00049834	-0.03063	-1.6856E-05	-0.93621	-0.0005152	550.2984352892918	36.053	0.51132	36.817	36.587	37.099	0.76338					22	9	3	0	0	0	0.48845	1	13116	13116		37.075	16.66	1	9239100			45133	2820	32985	33250	44064	44064					0.03684547708849095
RSLAYIHSF	9	Unmodified	_RSLAYIHSF_					0	0	0		ENSG00000082701|ENST00000264235|GSK3B;nc|ENSG00000082701|P49841-2|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	MULTI-MSMS	A375_MHC_IP_R2	2	547.6925659179688	2	547.293091	1092.57163	-0.64629	-0.00035371	-0.27889	-0.00015263	-0.92518	-0.00050634	547.2928865113123	47.662	0.50833	48.423	48.174	48.682	0.76128					24	9	3	0	0	0	0.020087	1	17854	17854		83.429	14.324	1	9485900			45134	1765	32986	33251	44065	44065					0.029045650544276214
RSLDGEGNFNW	11	Unmodified	_RSLDGEGNFNW_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	A375_MHC_IP_R2	2	648.19384765625	2	647.794183	1293.57381	-0.55384	-0.00035878	0.063246	4.097E-05	-0.4906	-0.0003178	647.7940727501065	68.208	0.40729	68.943	68.714	69.121	0.73511					12	7	2	0	0	0	0.36994	1	25876	25876		41.347	28.305	1	2025100			45135	4961	32987	33252	44066	44066					-0.06123050998417057
RSLDGEGNFNW	11	Unmodified	_RSLDGEGNFNW_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MATCH	A375_MHC_IP_R1	1		2	647.794183	1293.57381	-0.24118	-0.00015624	0.19896	0.00012889	-0.042223	-2.7352E-05	647.7940570544739	68.821	0.35323	68.821	68.666	69.02	0	-0.061104	0.00010581	NaN	41.347	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1541300			45136	4961	32987	33252							-0.06123050998417057
RSLEAQNW	8	Unmodified	_RSLEAQNW_					0	0	0			REV__ENSG00000172840|ENST00000311765|PDP2	REV__ENSG00000172840|ENST00000311765|PDP2	MULTI-SECPEP	A375_MHC_IP_R1	1	502.6747741699219	2	502.251423	1002.48829	-0.3757	-0.0001887	0.78349	0.00039351	0.40779	0.00020481	502.25181540741244	34.758	0.25303	34.758	34.608	34.861	0					6	4	2	0	0	0	0.95423	1	11475	11475		12.532	5.2423	1	3440900	+		45137	21175	32988	33253	44067	44067					-0.012851713934310283
RSLEDENKEAF	11	Unmodified	_RSLEDENKEAF_					0	0	0		NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	446.6332092285156	3	446.549246	1336.62591	-0.29161	-0.00013022	0.49924	0.00022294	0.20763	9.2717E-05	446.54952520199214	27.993	0.2514	27.993	27.887	28.138	0					6	4	2	0	0	0	1.0006	1	8550	8550		1.4074	1.1118	1	1201300			45138	4441	32989	33254	44068	44068					-0.02893932375309305
RSLEFQTEY	9	Unmodified	_RSLEFQTEY_					0	0	0		ENST00000514129.5_2_4:22444476-22475438:-|nuORF;nc|ENSG00000152990|Q8IWK6-2|ADGRA3;nc|ENSG00000152990|Q8IWK6-3|ADGRA3;ENSG00000152990|ENST00000334304|ADGRA3	ENST00000514129.5_2_4:22444476-22475438:-|nuORF	ENST00000514129.5_2_4:22444476-22475438:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	587.18212890625	2	586.782753	1171.55095	-0.87736	-0.00051482	-0.082806	-4.8589E-05	-0.96016	-0.00056341	586.7818416710124	51.918	0.60982	52.671	52.473	53.083	0.75225					14	11	2	0	0	0	0.69381	1	19601	19601		20.415	0	1	2688000			45139	5996	32990	33255	44069	44069					-0.0279607011589178
RSLEFQTEY	9	Unmodified	_RSLEFQTEY_					0	0	0		ENST00000514129.5_2_4:22444476-22475438:-|nuORF;nc|ENSG00000152990|Q8IWK6-2|ADGRA3;nc|ENSG00000152990|Q8IWK6-3|ADGRA3;ENSG00000152990|ENST00000334304|ADGRA3	ENST00000514129.5_2_4:22444476-22475438:-|nuORF	ENST00000514129.5_2_4:22444476-22475438:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	586.782753	1171.55095	-0.34705	-0.00020365	0.59781	0.00035079	0.25076	0.00014714	586.78333776051	52.548	0.35733	52.548	52.387	52.744	0	-0.06124	0.00010558	NaN	20.415	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2452900			45140	5996	32990	33255							-0.0279607011589178
RSLEHLNLP	9	Unmodified	_RSLEHLNLP_					0	0	0			REV__SRCIN1|p.G876R|1|0.11|ENSG00000277363|chr17:38551987-38551987|C/T|missense_variant	REV__SRCIN1|p.G876R|1|0.11|ENSG00000277363|chr17:38551987-38551987|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	360.07855224609375	3	360.204974	1077.59309	-0.10481	-3.7751E-05	-0.61003	-0.00021974	-0.71484	-0.00025749	360.20457306821964	24.059	0.25393	24.059	23.94	24.194	0					6	4	2	0	0	0	0.71341	1	6788	6788		8.9762	0	1	1064100	+		45141	28044	32991	33256	44070	44070					0.057399500831252226
RSLEISQSY	9	Unmodified	_RSLEISQSY_					0	0	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	A375_MHC_IP_R2	2	542.1768798828125	2	541.77747	1081.54039	-0.9771	-0.00052937	-1.0659	-0.00057747	-2.043	-0.0011068	541.7764706036842	39.149	1.069	39.924	39.708	40.777	0.77451					35	20	3	0	0	0	0.044425	1	14430	14430		87.258	27.184	1	20612000			45142	5800	32992	33257	44071	44071					0.0028794722968541464
RSLESLHSF	9	Unmodified	_RSLESLHSF_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R1	1	538.679931640625	2	538.28018	1074.54581	-0.56149	-0.00030224	0.27974	0.00015058	-0.28174	-0.00015166	538.2803111897364	38.606	0.45882	38.606	38.423	38.882	0					25	8	4	0	0	0	0.0092511	1	13114	13114		103.42	10.766	1	31931000			45143	14788	32993	33258	44072	44072					0.011516708121462216
RSLESLHSF	9	Unmodified	_RSLESLHSF_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R2	2	538.6796875	2	538.28018	1074.54581	-1.044	-0.00056195	0.087509	4.7104E-05	-0.95646	-0.00051484	538.280210304402	37.78	0.4605	38.554	38.279	38.739	0.77451					26	8	4	0	0	0	0.010044	1	13811	13811		125.04	10.389	1	33524000			45144	14788	32993	33258	44073	44073					0.011516708121462216
RSLFRSNIY	9	Unmodified	_RSLFRSNIY_					0	0	0			REV__L1PB1_dup12829|chr21:46585548-46587567:+|1.182533549073013|0.3950341382787979|1.58|465.0|20|1|sense	REV__L1PB1_dup12829|chr21:46585548-46587567:+|1.182533549073013|0.3950341382787979|1.58|465.0|20|1|sense	MULTI-SECPEP	A375_MHC_IP_R1	1	578.6979370117188	2	578.317097	1154.61964	-0.51872	-0.00029998	0.08111	4.6908E-05	-0.43761	-0.00025308	578.3173135669233	41.305	0.25475	41.305	41.164	41.419	0					8	4	2	0	0	0	0.74875	1	14289	14289		10.824	1.28	1	1109800	+		45145	26901	32994	33259	44074	44074					0.04851638974469097
RSLFSIRQW	9	Unmodified	_RSLFSIRQW_					0	0	0		ENST00000602414.5_1_4:119200566-119200866:+|nuORF	ENST00000602414.5_1_4:119200566-119200866:+|nuORF	ENST00000602414.5_1_4:119200566-119200866:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	398.6242370605469	3	398.224368	1191.65128	-0.1772	-7.0566E-05	0.19988	7.9598E-05	0.022681	9.0322E-06	398.2244252972232	73.735	0.60844	73.735	73.437	74.045	0					27	11	3	0	0	0	0.035228	1	26830	26830		70.496	53.053	1	7563200			45146	13881	32995	33260	44075	44075					0.06311631728431166
RSLFSIRQW	9	Unmodified	_RSLFSIRQW_					0	0	0		ENST00000602414.5_1_4:119200566-119200866:+|nuORF	ENST00000602414.5_1_4:119200566-119200866:+|nuORF	ENST00000602414.5_1_4:119200566-119200866:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	597.2328491210938	2	596.832914	1191.65128	-0.41096	-0.00024527	1.0356	0.00061806	0.6246	0.00037278	596.8330889447147	73.706	0.55692	73.706	73.386	73.943	0					27	10	4	0	0	0	0.56023	1	26833	26833		34.932	24.858	1	7608300			45147	13881	32995	33260	44076	44076					0.06311631728431166
RSLFSIRQW	9	Unmodified	_RSLFSIRQW_					0	0	0		ENST00000602414.5_1_4:119200566-119200866:+|nuORF	ENST00000602414.5_1_4:119200566-119200866:+|nuORF	ENST00000602414.5_1_4:119200566-119200866:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	398.6243591308594	3	398.224368	1191.65128	-0.15814	-6.2975E-05	-0.1826	-7.2716E-05	-0.34074	-0.00013569	398.22424716434944	72.725	0.55947	73.46	73.175	73.734	0.73541					27	10	3	0	0	0	0.017116	1	27588	27588		87.123	63.334	1	7137900			45148	13881	32995	33260	44077	44077					0.06311631728431166
RSLGTADVHF	10	Unmodified	_RSLGTADVHF_					0	0	0		ENST00000512673.1_1_17:79846815-79848630:-|nuORF;nc|ENSG00000183684|Q86V81|ALYREF;ENSG00000183684|ENST00000505490|ALYREF	ENST00000512673.1_1_17:79846815-79848630:-|nuORF	ENST00000512673.1_1_17:79846815-79848630:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1851806640625	2	551.78563	1101.55671	-0.85538	-0.00047199	0.20089	0.00011085	-0.65449	-0.00036114	551.7857154300233	41.654	0.45807	42.429	42.149	42.607	0.77451					23	8	4	0	0	0	0.51493	1	15436	15436		24.991	0	1	7888500			45149	8518	32996	33261	44078	44078					0.009990731864036206
RSLHARIEQW	10	Unmodified	_RSLHARIEQW_					0	0	0		ENSG00000180008|ENST00000555846|SOCS4;ENSG00000171150|ENST00000394861|SOCS5	ENSG00000180008|ENST00000555846|SOCS4	ENSG00000180008|ENST00000555846|SOCS4	MULTI-MSMS	A375_MHC_IP_R1	1	432.97015380859375	3	432.570427	1294.68945	-0.19583	-8.4709E-05	0.19253	8.3285E-05	-0.0032932	-1.4245E-06	432.57036565767663	31.331	0.81199	31.331	31.109	31.921	0					23	15	3	0	0	0	0.57453	1	10044	10044		16.137	11.09	1	5634300			45150	8271	32997	33262	44079	44079					0.053895176430842184
RSLHARIEQW	10	Unmodified	_RSLHARIEQW_					0	0	0		ENSG00000180008|ENST00000555846|SOCS4;ENSG00000171150|ENST00000394861|SOCS5	ENSG00000180008|ENST00000555846|SOCS4	ENSG00000180008|ENST00000555846|SOCS4	MULTI-MSMS	A375_MHC_IP_R2	2	432.9701843261719	3	432.570427	1294.68945	-0.25433	-0.00011001	-0.24496	-0.00010596	-0.49928	-0.00021598	432.5702737617621	30.411	0.35448	31.129	30.911	31.266	0.71857					15	6	3	0	0	0	0.45806	1	10684	10684		27.129	19.652	1	2622100			45151	8271	32997	33262	44080	44080					0.053895176430842184
RSLINSNVGF	10	Unmodified	_RSLINSNVGF_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-SECPEP	A375_MHC_IP_R1	1	554.2009887695312	2	553.80128	1105.58801	-0.78217	-0.00043317	0.2555	0.0001415	-0.52667	-0.00029167	553.8013701712497	66.75	1.0208	66.75	66.173	67.194	0					43	19	3	0	0	0	0.24526	1	24145	24145		59.052	27.784	1	15283000			45152	6987	32998	33263	44081	44081					0.03943646220523078
RSLINSNVGF	10	Unmodified	_RSLINSNVGF_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-SECPEP	A375_MHC_IP_R2	2	554.2008056640625	2	553.80128	1105.58801	-0.9785	-0.00054189	-0.0077047	-4.2669E-06	-0.9862	-0.00054616	553.8012320221632	65.813	0.763	66.551	66.121	66.884	0.73811					25	14	2	0	0	0	0.2729	1	24955	24955		55.235	20.303	1	17421000			45153	6987	32998	33263	44082	44082					0.03943646220523078
RSLKDALFKW	10	Unmodified	_RSLKDALFKW_					0	0	0		nc|ENSG00000138592|P40818-2|USP8;ENSG00000138592|ENST00000307179|USP8;ENST00000560730.5_1_15:50757272-50769512:+|nuORF	nc|ENSG00000138592|P40818-2|USP8	nc|ENSG00000138592|P40818-2|USP8	MULTI-MSMS	A375_MHC_IP_R1	1	422.3117980957031	3	421.91179	1262.71354	0.11555	4.8751E-05	-0.059445	-2.5081E-05	0.056102	2.367E-05	421.9117570674916	71.082	0.51362	71.082	70.8	71.313	0					29	9	4	0	0	0	2.711E-05	1	25807	25807		130.09	98.456	1	8877500			45154	5001	32999	33264	44083	44083					0.09269358076744538
RSLKDALFKW	10	Unmodified	_RSLKDALFKW_					0	0	0		nc|ENSG00000138592|P40818-2|USP8;ENSG00000138592|ENST00000307179|USP8;ENST00000560730.5_1_15:50757272-50769512:+|nuORF	nc|ENSG00000138592|P40818-2|USP8	nc|ENSG00000138592|P40818-2|USP8	MULTI-MSMS	A375_MHC_IP_R2	2	422.64617919921875	3	421.91179	1262.71354	-0.056188	-2.3707E-05	-0.17307	-7.3019E-05	-0.22925	-9.6725E-05	421.9116768530488	70.084	0.55788	70.818	70.591	71.149	0.73421					29	10	4	0	0	0	2.5088E-05	1	26572	26572		126.33	88.558	1	9905900			45155	5001	32999	33264	44084	44084					0.09269358076744538
RSLKKFKDQ	9	Unmodified	_RSLKKFKDQ_					0	0	0		TRIM31|p.G288R|1|0.61|ENSG00000204616|chr6:30108074-30108074|C/T|missense_variant	TRIM31|p.G288R|1|0.61|ENSG00000204616|chr6:30108074-30108074|C/T|missense_variant	TRIM31|p.G288R|1|0.61|ENSG00000204616|chr6:30108074-30108074|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	383.25238037109375	3	383.89614	1148.66659	-0.0049828	-1.9129E-06	-0.57493	-0.00022071	-0.57991	-0.00022262	383.89596337992896	26.753	0.40248	26.753	26.575	26.978	0					11	7	2	0	0	0	0.81275	1	7962	7962		0.20686	0	1	2053900			45156	30073	33000	33265	44085	44085					0.09820498525596122
RSLLKQFKS	9	Unmodified	_RSLLKQFKS_					0	0	0		nc|ENSG00000184178|Q8WU76-2|SCFD2;ENSG00000184178|ENST00000401642|SCFD2	nc|ENSG00000184178|Q8WU76-2|SCFD2	nc|ENSG00000184178|Q8WU76-2|SCFD2	MSMS	A375_MHC_IP_R1	1	369.5844421386719	3	369.560869	1105.66078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.269	1	20.269	19.769	20.769	0								0	0	0	0.15486	1	5176	5176		4.897	1.31	1				45157	8556	33001	33266	44086	44086					0.11217400013947554
RSLLSTRL	8	Unmodified	_RSLLSTRL_					0	0	0			REV__ENSG00000205436|ENST00000688303|EXOC3L4	REV__ENSG00000205436|ENST00000688303|EXOC3L4	MULTI-MSMS	A375_MHC_IP_R1	1	473.6956787109375	2	473.295633	944.576714	-0.82923	-0.00039247	0.21981	0.00010403	-0.60942	-0.00028844	473.2957083655579	29.822	0.39226	29.822	29.607	29.999	0					16	7	3	0	0	0	0.34256	1	9361	9361		55.503	0	1	58758000	+		45158	22575	33002	33267	44087	44087					0.1022086891704248
RSLLSTRL	8	Unmodified	_RSLLSTRL_					0	0	0			REV__ENSG00000205436|ENST00000688303|EXOC3L4	REV__ENSG00000205436|ENST00000688303|EXOC3L4	MULTI-MSMS	A375_MHC_IP_R2	2	473.69500732421875	2	473.295633	944.576714	-1.347	-0.00063751	0.18331	8.6758E-05	-1.1636	-0.00055075	473.29568217460053	28.961	0.44646	29.66	29.484	29.93	0.69872					20	8	4	0	0	0	0.10985	1	10069	10069		93.166	13.57	1	61365000	+		45159	22575	33002	33267	44088	44088					0.1022086891704248
RSLLSTRL	8	Unmodified	_RSLLSTRL_					0	0	0			REV__ENSG00000205436|ENST00000688303|EXOC3L4	REV__ENSG00000205436|ENST00000688303|EXOC3L4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	473.295633	944.576714	-0.82923	-0.00039247	0.21981	0.00010403	-0.60942	-0.00028844	473.2957083655579	29.822	0.39226	29.822	29.607	29.999	0	0.081215	2.3592E-05	NaN	93.166	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58758000	+		45160	22575	33002	33267							0.1022086891704248
RSLLSTRL	8	Unmodified	_RSLLSTRL_					0	0	0			REV__ENSG00000205436|ENST00000688303|EXOC3L4	REV__ENSG00000205436|ENST00000688303|EXOC3L4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	473.295633	944.576714	-1.347	-0.00063751	0.18331	8.6758E-05	-1.1636	-0.00055075	473.29568217460053	28.961	0.44646	29.66	29.484	29.93	0.69872	-0.081215	-1.0961E-05	NaN	93.166	20	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61365000	+		45161	22575	33002	33267							0.1022086891704248
RSLNQTGVQW	10	Unmodified	_RSLNQTGVQW_					0	0	0		nc|ENSG00000174227|Q5H8A4-3|PIGG;nc|ENSG00000174227|Q5H8A4-2|PIGG;ENSG00000174227|ENST00000453061|PIGG;ENST00000508669.1_1_4:517631-521020:+|nuORF;ENST00000511247.1_1_4:517319-518397:+|nuORF	nc|ENSG00000174227|Q5H8A4-3|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-SECPEP	A375_MHC_IP_R1	1	594.7006225585938	2	594.809636	1187.60472	0.054194	3.2235E-05	-0.054694	-3.2532E-05	-0.00049981	-2.9729E-07	594.8097725866029	49.387	0.45738	49.387	49.134	49.591	0					18	8	3	0	0	0	0.41513	1	17418	17418		45.74	3.7843	1	2854200			45162	7863	33003	33268	44089	44089					0.018421471064584694
RSLPDPNLI	9	Unmodified	_RSLPDPNLI_					0	0	0		nc|ENSG00000159842|Q12979-3|ABR;ENST00000572585.5_1_17:909322-915797:-|nuORF;nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR	nc|ENSG00000159842|Q12979-3|ABR	nc|ENSG00000159842|Q12979-3|ABR	MULTI-MSMS	A375_MHC_IP_R1	1	513.1923828125	2	512.792924	1023.57129	-0.61645	-0.00031611	-0.1965	-0.00010076	-0.81295	-0.00041687	512.7927500666764	65.634	0.86647	65.634	65.206	66.072	0					39	16	3	0	0	0	0.024574	1	23750	23750		79.596	7.674	1	9571200			45163	6389	33004	33269	44090	44090					0.0604514533456495
RSLPDPNLI	9	Unmodified	_RSLPDPNLI_					0	0	0		nc|ENSG00000159842|Q12979-3|ABR;ENST00000572585.5_1_17:909322-915797:-|nuORF;nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR	nc|ENSG00000159842|Q12979-3|ABR	nc|ENSG00000159842|Q12979-3|ABR	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1975708007812	2	512.792924	1023.57129	-0.75839	-0.0003889	-0.33761	-0.00017312	-1.096	-0.00056202	512.7926686737175	64.834	0.8128	65.572	65.155	65.968	0.73811					37	15	3	0	0	0	0.27114	1	24602	24602		53.404	9.5457	1	11371000			45164	6389	33004	33269	44091	44091					0.0604514533456495
RSLPDPNLITF	11	Unmodified	_RSLPDPNLITF_					0	0	0		nc|ENSG00000159842|Q12979-3|ABR;ENST00000572585.5_1_17:909322-915797:-|nuORF;nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR	nc|ENSG00000159842|Q12979-3|ABR	nc|ENSG00000159842|Q12979-3|ABR	MULTI-SECPEP	A375_MHC_IP_R2	2	637.2509155273438	2	636.85097	1271.68739	-0.93266	-0.00059397	-1.1517	-0.00073343	-2.0843	-0.0013274	636.8510656241314	97.42	1.1656	98.176	97.368	98.534	0.75586					42	22	3	0	0	0	0.24709	1	36971	36971		55.249	0	1	5312700			45165	6389	33005	33270	44092	44092					0.06241044114608485
RSLPEHPAF	9	Unmodified	_RSLPEHPAF_					0	0	0		nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8;nc|ENSG00000204634|O95759-2|TBC1D8;nc|ENSG00000133138|Q0IIM8-2|TBC1D8B;nc|ENSG00000133138|Q0IIM8-3|TBC1D8B;ENSG00000133138|ENST00000357242|TBC1D8B;ENSG00000109436|ENST00000442267|TBC1D9	nc|ENSG00000204634|O95759|TBC1D8;ENSG00000109436|ENST00000442267|TBC1D9	nc|ENSG00000204634|O95759|TBC1D8	MULTI-SECPEP	A375_MHC_IP_R1	1	527.6770629882812	2	527.277441	1052.54033	-0.43826	-0.00023109	-0.055308	-2.9163E-05	-0.49357	-0.00026025	527.2773231742061	33.723	0.45413	33.723	33.496	33.95	0					15	8	2	0	0	0	0.59614	1	11067	11067		22.658	4.5231	1	3936400			45166	9472;2868	33006	33271	44093	44093					0.016159920203108413
RSLPEHPAF	9	Unmodified	_RSLPEHPAF_					0	0	0		nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8;nc|ENSG00000204634|O95759-2|TBC1D8;nc|ENSG00000133138|Q0IIM8-2|TBC1D8B;nc|ENSG00000133138|Q0IIM8-3|TBC1D8B;ENSG00000133138|ENST00000357242|TBC1D8B;ENSG00000109436|ENST00000442267|TBC1D9	nc|ENSG00000204634|O95759|TBC1D8;ENSG00000109436|ENST00000442267|TBC1D9	nc|ENSG00000204634|O95759|TBC1D8	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6771240234375	2	527.277441	1052.54033	-0.55381	-0.00029201	-0.35644	-0.00018794	-0.91025	-0.00047995	527.277180630835	32.909	0.45835	33.646	33.417	33.876	0.73692					18	8	3	0	0	0	0.34746	1	11758	11758		45.7	16.618	1	3884400			45167	9472;2868	33006	33271	44094	44094					0.016159920203108413
RSLPENIQF	9	Unmodified	_RSLPENIQF_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000590244.1_1_17:58543761-58603427:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1614990234375	2	552.29583	1102.57711	-0.93911	-0.00051867	0.64683	0.00035724	-0.29228	-0.00016142	552.2961825944461	65.561	1.5239	66.299	65.461	66.985	0.73811					55	29	3	0	0	0	0.090157	1	24818	24818		67.838	9.1593	1	30016000			45168	1334	33007	33272	44095	44095					0.029922438462108403
RSLPLVQV	8	Unmodified	_RSLPLVQV_					0	0	0		LARP4B|p.N447Mfs*45|1|0.17|ENSG00000107929|chr10:825211-825211|A/-|frameshift_variant;ENSG00000107929|ENST00000316157|LARP4B	LARP4B|p.N447Mfs*45|1|0.17|ENSG00000107929|chr10:825211-825211|A/-|frameshift_variant	LARP4B|p.N447Mfs*45|1|0.17|ENSG00000107929|chr10:825211-825211|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	456.68731689453125	2	456.287277	910.560001	-0.42287	-0.00019295	0.35917	0.00016388	-0.063703	-2.9067E-05	456.28738232411183	66.245	0.91496	66.245	65.921	66.836	0					29	17	3	0	0	0	0.48656	1	23957	23957		49.554	0	1	7663300			45169	2769	33008	33273	44096	44096					0.10114368031088361
RSLPLVQV	8	Unmodified	_RSLPLVQV_					0	0	0		LARP4B|p.N447Mfs*45|1|0.17|ENSG00000107929|chr10:825211-825211|A/-|frameshift_variant;ENSG00000107929|ENST00000316157|LARP4B	LARP4B|p.N447Mfs*45|1|0.17|ENSG00000107929|chr10:825211-825211|A/-|frameshift_variant	LARP4B|p.N447Mfs*45|1|0.17|ENSG00000107929|chr10:825211-825211|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	456.68719482421875	2	456.287277	910.560001	-0.33635	-0.00015347	-0.15019	-6.8528E-05	-0.48653	-0.000222	456.2871764474264	65.236	0.60918	65.974	65.664	66.273	0.73812					29	11	3	0	0	0	0.38299	1	24710	24710		53.833	0	1	7537800			45170	2769	33008	33273	44097	44097					0.10114368031088361
RSLPQRFKM	9	Unmodified	_RSLPQRFKM_					0	0	0		ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B	ENST00000562362.5_1_16:66966108-66968009:-|nuORF	ENST00000562362.5_1_16:66966108-66968009:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	388.62188720703125	3	388.22197	1161.64408	0.11054	4.2914E-05	-0.048218	-1.8719E-05	0.06232	2.4194E-05	388.2219337381062	27.254	0.4048	27.254	27.078	27.482	0					14	7	2	0	0	0	0.068433	1	8249	8249		57.108	46.792	1	14255000			45171	7094	33009	33274	44098	44098					0.0697257585634361
RSLPQRFKM	9	Unmodified	_RSLPQRFKM_					0	0	0		ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B	ENST00000562362.5_1_16:66966108-66968009:-|nuORF	ENST00000562362.5_1_16:66966108-66968009:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	388.6219482421875	3	388.22197	1161.64408	-0.51822	-0.00020118	0.15051	5.843E-05	-0.36771	-0.00014275	388.2220584726599	26.581	0.51007	27.241	27.058	27.568	0.65992					21	9	3	0	0	0	0.24324	1	8981	8981		29.437	15.032	1	13530000			45172	7094	33009	33274	44099	44099					0.0697257585634361
RSLRIWKHGE	10	Unmodified	_RSLRIWKHGE_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-SECPEP	A375_MHC_IP_R1	1	427.3133239746094	3	427.910672	1280.71019	-0.078173	-3.3451E-05	-0.11824	-5.0596E-05	-0.19641	-8.4047E-05	427.91064907384134	31.612	0.55876	31.612	31.414	31.973	0					20	10	3	0	0	0	0.74263	1	10091	10091		27.088	4.3134	1	2419200			45173	4853	33010	33275	44100	44100					0.08106108022730041
RSLRIWKHGE	10	Unmodified	_RSLRIWKHGE_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MATCH	A375_MHC_IP_R2	2		3	427.910672	1280.71019	-0.21447	-9.1776E-05	-0.30465	-0.00013036	-0.51912	-0.00022214	427.91052850010556	30.674	0.40266	31.392	31.165	31.567	0.71857	-0.11003	-0.00010765	NaN	27.088	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2348500			45174	4853	33010	33275							0.08106108022730041
RSLRLQKQF	9	Unmodified	_RSLRLQKQF_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	A375_MHC_IP_R1	1	392.97174072265625	3	392.571768	1174.69348	0.11889	4.6674E-05	-0.11909	-4.6751E-05	-0.00019586	-7.689E-08	392.571709122046	25.234	0.91349	25.234	25.053	25.966	0					47	17	4	0	0	0	0.048392	1	7328	7328		64.927	29.995	1	117670000			45175	8524	33011	33276	44101	44101					0.11311607136781276
RSLRLQKQF	9	Unmodified	_RSLRLQKQF_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	A375_MHC_IP_R2	2	392.97149658203125	3	392.571768	1174.69348	-0.54049	-0.00021218	-0.10106	-3.9673E-05	-0.64155	-0.00025186	392.5717200543536	24.543	0.65933	25.187	25.009	25.668	0.64368					39	12	5	0	0	0	0.048392	2	8055	8055;8109		64.927	29.995	1	142670000			45176	8524	33011	33276	44102;44103	44102					0.11311607136781276
RSLSDLAQIF	10	Unmodified	_RSLSDLAQIF_					0	0	0			REV__nc|ENSG00000093009|O75419-2|CDC45	REV__nc|ENSG00000093009|O75419-2|CDC45	MULTI-SECPEP	A375_MHC_IP_R2	2	383.2809753417969	3	383.880267	1148.61897	-0.046058	-1.7681E-05	0.10744	4.1244E-05	0.061383	2.3564E-05	383.88035697094426	42.463	0.50891	43.236	43.014	43.523	0.7724					16	9	3	0	0	0	0.88038	1	15807	15807		17.049	17.049	1	2725400	+		45177	16980	33012	33277	44104	44104					0.05060799534726357
RSLSDLFRRY	10	Unmodified	_RSLSDLFRRY_					0	0	0		nc|ENSG00000147526|O75410-3|TACC1;nc|ENSG00000147526|O75410-7|TACC1;nc|ENSG00000147526|O75410-9|TACC1;ENSG00000147526|ENST00000317827|TACC1;nc|ENSG00000147526|O75410-2|TACC1;ENST00000521568.1_1_8:38697778-38700914:+|nuORF;nc|ENSG00000147526|O75410-8|TACC1;nc|ENSG00000147526|O75410-10|TACC1;nc|ENSG00000147526|O75410-5|TACC1;nc|ENSG00000147526|O75410-4|TACC1;nc|ENSG00000147526|O75410-6|TACC1	nc|ENSG00000147526|O75410-3|TACC1	nc|ENSG00000147526|O75410-3|TACC1	MULTI-MSMS	A375_MHC_IP_R1	1	438.64227294921875	3	438.242199	1311.70477	-0.15128	-6.6298E-05	-0.17114	-7.5E-05	-0.32242	-0.0001413	438.2421619367357	60.724	0.6611	60.724	60.363	61.024	0					20	12	2	0	0	0	0.5004	1	21863	21863		28.181	17.116	1	5646700			45178	5689	33013	33278	44105	44105					0.0613838444025987
RSLSDLFRRY	10	Unmodified	_RSLSDLFRRY_					0	0	0		nc|ENSG00000147526|O75410-3|TACC1;nc|ENSG00000147526|O75410-7|TACC1;nc|ENSG00000147526|O75410-9|TACC1;ENSG00000147526|ENST00000317827|TACC1;nc|ENSG00000147526|O75410-2|TACC1;ENST00000521568.1_1_8:38697778-38700914:+|nuORF;nc|ENSG00000147526|O75410-8|TACC1;nc|ENSG00000147526|O75410-10|TACC1;nc|ENSG00000147526|O75410-5|TACC1;nc|ENSG00000147526|O75410-4|TACC1;nc|ENSG00000147526|O75410-6|TACC1	nc|ENSG00000147526|O75410-3|TACC1	nc|ENSG00000147526|O75410-3|TACC1	MULTI-MSMS	A375_MHC_IP_R2	2	438.6416320800781	3	438.242199	1311.70477	-0.67	-0.00029362	-0.034105	-1.4946E-05	-0.70411	-0.00030857	438.24214339373924	59.776	0.65703	60.523	60.249	60.906	0.74714					29	12	4	0	0	0	0.63381	1	22611	22611		18.34	10.494	1	6598800			45179	5689	33013	33278	44106	44106					0.0613838444025987
RSLSLCNMF	9	Unmodified	_RSLSLCNMF_					0	0	0		NCKAP1|p.H711Afs*9|1|0.13|ENSG00000061676|chr2:182956473-182956485|TATTTCCAGATGA/-|frameshift_variant;NCKAP1|p.S861Lfs*12|1|0.27|ENSG00000061676|chr2:182952409-182952424|AGTTCAGCAACTTGTG/-|frameshift_variant;ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENST00000495619.1_1_2:183822183-183829436:-|nuORF	NCKAP1|p.H711Afs*9|1|0.13|ENSG00000061676|chr2:182956473-182956485|TATTTCCAGATGA/-|frameshift_variant	NCKAP1|p.H711Afs*9|1|0.13|ENSG00000061676|chr2:182956473-182956485|TATTTCCAGATGA/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	357.44879150390625	3	357.5089	1069.50487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.747	1	73.747	73.247	74.247	0								0	0	0	0.15486	1	26859	26859		0.77653	0	1				45180	1321	33014	33279	44107	44107					-0.02710129823344687
RSLSTTNVF	9	Unmodified	_RSLSTTNVF_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000535147.5_1_11:61081078-61081129:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-SECPEP	A375_MHC_IP_R2	2	512.040283203125	2	512.774731	1023.53491	-0.60284	-0.00030912	-0.62702	-0.00032152	-1.2299	-0.00063064	512.7743645174061	47.505	1.0151	48.266	47.867	48.883	0.76128					47	19	4	0	0	0	0.33896	1	17822	17822		47.594	29.448	1	56118000			45181	7247	33015	33280	44108	44108					0.02408268437852712
RSLSVTQV	8	Unmodified	_RSLSVTQV_					0	0	0			REV__CSH2|p.P31S|1|0.15|ENSG00000213218|chr17:63873259-63873259|G/A|missense_variant	REV__CSH2|p.P31S|1|0.15|ENSG00000213218|chr17:63873259-63873259|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	445.6584777832031	2	445.258717	888.50288	0.00125	5.5656E-07	-1.5425	-0.00068682	-1.5413	-0.00068626	445.25785419727447	33.577	0.70936	33.577	33.342	34.052	0					31	13	3	0	0	0	0.80467	1	10982	10982		34.402	3.7652	1	10479000	+		45182	15921	33016	33281	44109	44109					0.05416900754710241
RSLSVTQV	8	Unmodified	_RSLSVTQV_					0	0	0			REV__CSH2|p.P31S|1|0.15|ENSG00000213218|chr17:63873259-63873259|G/A|missense_variant	REV__CSH2|p.P31S|1|0.15|ENSG00000213218|chr17:63873259-63873259|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	445.6583251953125	2	445.258717	888.50288	-0.44414	-0.00019776	0.1256	5.5926E-05	-0.31853	-0.00014183	445.25870873736073	32.792	0.55998	33.528	33.162	33.722	0.73692					19	10	3	0	0	0	0.85138	1	11699	11699		31.268	3.6395	1	8416600	+		45183	15921	33016	33281	44110	44110					0.05416900754710241
RSLVIVKKL	9	Unmodified	_RSLVIVKKL_					0	0	0		ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	MULTI-MSMS	A375_MHC_IP_R1	1	352.9814758300781	3	352.581493	1054.72265	-0.34632	-0.00012211	0.27136	9.5676E-05	-0.074963	-2.643E-05	352.58150965466115	32.633	0.35132	32.633	32.383	32.734	0					20	6	4	0	0	0	0.058715	2	10541	10541;10580		60.899	21.686	1	11344000			45184	9017	33017	33282	44111;44112	44111					0.1974775143307852
RSLVIVKKL	9	Unmodified	_RSLVIVKKL_					0	0	0		ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	MULTI-MSMS	A375_MHC_IP_R2	2	352.9813537597656	3	352.581493	1054.72265	-0.24942	-8.794E-05	0.12703	4.479E-05	-0.12238	-4.315E-05	352.5815026275478	31.639	0.35834	32.375	32.146	32.504	0.73691					17	6	3	0	0	0	0.31821	2	11189	11189;11225		29.281	6.623	1	12217000			45185	9017	33017	33282	44113;44114	44113					0.1974775143307852
RSLVLVKQF	9	Unmodified	_RSLVLVKQF_					0	0	0		ENST00000339418.9_1_14:105642869-105647546:-|nuORF;ENST00000551024.5_1_14:105642305-105647594:-|nuORF;ENSG00000183828|ENST00000392568|NUDT14	ENST00000339418.9_1_14:105642869-105647546:-|nuORF	ENST00000339418.9_1_14:105642869-105647546:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	364.29718017578125	3	363.897481	1088.67061	0.075476	2.7466E-05	0.065718	2.3915E-05	0.14119	5.138E-05	363.8973193632862	53.194	0.81106	53.194	52.592	53.403	0					27	15	3	0	0	0	0.30259	1	18950	18950		30.431	14.157	1	4826000			45186	8534	33018	33283	44115	44115					0.12982588019326613
RSLVLVKQF	9	Unmodified	_RSLVLVKQF_					0	0	0		ENST00000339418.9_1_14:105642869-105647546:-|nuORF;ENST00000551024.5_1_14:105642305-105647594:-|nuORF;ENSG00000183828|ENST00000392568|NUDT14	ENST00000339418.9_1_14:105642869-105647546:-|nuORF	ENST00000339418.9_1_14:105642869-105647546:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	545.7421264648438	2	545.342584	1088.67061	-0.66885	-0.00036475	-0.12477	-6.8045E-05	-0.79363	-0.0004328	545.3425440804542	53.174	0.40527	53.174	52.946	53.352	0					18	7	3	0	0	0	0.47674	1	18952	18952		29.841	9.387	1	4711600			45187	8534	33018	33283	44116	44116					0.12982588019326613
RSLVLVKQF	9	Unmodified	_RSLVLVKQF_					0	0	0		ENST00000339418.9_1_14:105642869-105647546:-|nuORF;ENST00000551024.5_1_14:105642305-105647594:-|nuORF;ENSG00000183828|ENST00000392568|NUDT14	ENST00000339418.9_1_14:105642869-105647546:-|nuORF	ENST00000339418.9_1_14:105642869-105647546:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	364.297119140625	3	363.897481	1088.67061	-0.41838	-0.00015225	-0.087202	-3.1733E-05	-0.50558	-0.00018398	363.89736931748956	52.163	0.45559	52.915	52.729	53.184	0.75225					19	8	4	0	0	0	0.11448	1	19672	19672		48.073	23.116	1	4409600			45188	8534	33018	33283	44117	44117					0.12982588019326613
RSLVLVKQF	9	Unmodified	_RSLVLVKQF_					0	0	0		ENST00000339418.9_1_14:105642869-105647546:-|nuORF;ENST00000551024.5_1_14:105642305-105647594:-|nuORF;ENSG00000183828|ENST00000392568|NUDT14	ENST00000339418.9_1_14:105642869-105647546:-|nuORF	ENST00000339418.9_1_14:105642869-105647546:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	545.7418212890625	2	545.342584	1088.67061	-1.1769	-0.00064182	0.35238	0.00019217	-0.82453	-0.00044965	545.3426714752876	52.225	0.35451	52.978	52.78	53.134	0.75225					12	6	3	0	0	0	0.61452	1	19683	19683		26.268	10.119	1	2631500			45189	8534	33018	33283	44118	44118					0.12982588019326613
RSLVPPKRF	9	Unmodified	_RSLVPPKRF_					0	0	0			REV__ENST00000400423.6_1_21:43540943-43557727:+|nuORF	REV__ENST00000400423.6_1_21:43540943-43557727:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	367.607421875	3	367.229342	1098.6662	-0.28188	-0.00010351	-1.0496	-0.00038543	-1.3314	-0.00048895	367.22893815287387	37.388	0.40955	38.159	37.917	38.327	0.7709					17	7	3	0	0	0	0.64971	1	13722	13722		11.495	3.0504	1	2796400	+		45190	24402	33019	33284	44119	44119					0.12081123596408361
RSLYRRPNL	9	Unmodified	_RSLYRRPNL_					0	0	0		ENST00000508369.5_1_4:89744182-89744293:-|nuORF	ENST00000508369.5_1_4:89744182-89744293:-|nuORF	ENST00000508369.5_1_4:89744182-89744293:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	393.60699462890625	3	392.231634	1173.67307	-0.51258	-0.00020105	-0.078685	-3.0863E-05	-0.59126	-0.00023191	392.23166751996104	20.27	1.6722	20.88	20.298	21.97	0.61029					110	32	6	0	0	0	0.64971	1	6190	6190		11.495	2.7493	1	311630000			45191	12876	33020	33285	44120	44120					0.09318436476996794
RSMEDFVTW	9	Unmodified	_RSMEDFVTW_					0	0	0		ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MULTI-SECPEP	A375_MHC_IP_R1	1	586.1660766601562	2	585.766049	1169.51754	-0.002623	-1.5365E-06	-0.56267	-0.00032959	-0.56529	-0.00033113	585.7658388018864	92.641	0.96623	92.641	92.261	93.228	0					48	18	4	0	0	0	0.50484	1	33992	33992		22.658	8.752	1	23393000			45192	8119	33021	33286	44121	44121					-0.06043395159463216
RSMKGLRWK	9	Unmodified	_RSMKGLRWK_					0	0	0		DNAJC30|p.E204K|1|0.28|ENSG00000176410|chr7:73682814-73682814|C/T|missense_variant	DNAJC30|p.E204K|1|0.28|ENSG00000176410|chr7:73682814-73682814|C/T|missense_variant	DNAJC30|p.E204K|1|0.28|ENSG00000176410|chr7:73682814-73682814|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	387.9319763183594	3	387.893965	1160.66007	0.34507	0.00013385	-0.38077	-0.0001477	-0.0357	-1.3848E-05	387.8934840763607	23.011	0.65849	23.011	22.773	23.432	0					30	12	4	0	0	0	0.67152	1	6413	6413		9.544	3.7605	1	6969200			45193	777	33022	33287	44122	44122					0.08616282093248628
RSMLDPYHLPN	11	Unmodified	_RSMLDPYHLPN_					0	0	0			REV__nc|ENSG00000227152|P0C7T2|OR2T7	REV__nc|ENSG00000227152|P0C7T2|OR2T7	MULTI-SECPEP	A375_MHC_IP_R2	2	672.2042846679688	2	671.832254	1341.64996	-1.2531	-0.00084186	-2.8161	-0.001892	-4.0692	-0.0027338	671.8301066735946	53.539	0.51214	54.29	54.097	54.609	0.75105					13	9	2	0	0	0	0.9889	1	20140	20140		4.897	2.1618	1	1582500	+		45194	27508	33023	33288	44123	44123					-0.00720370422641281
RSNIHRSACS	10	Unmodified	_RSNIHRSACS_					0	0	0			REV__ENST00000468045.5_1_2:27356354-27356477:-|nuORF	REV__ENST00000468045.5_1_2:27356354-27356477:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	566.17724609375	2	565.777813	1129.54107	-0.41138	-0.00023275	-0.59689	-0.00033771	-1.0083	-0.00057046	565.7773158006962	64.267	0.55684	64.267	63.939	64.495	0					18	10	2	0	0	0	0.92227	1	23215	23215		13.042	4.2971	1	5689900	+		45195	25069	33024	33289	44124	44124					-0.018515366022711532
RSNKLHFAF	9	Unmodified	_RSNKLHFAF_					0	0	0		ENSG00000187446|ENST00000334660|CHP1	ENSG00000187446|ENST00000334660|CHP1	ENSG00000187446|ENST00000334660|CHP1	MULTI-SECPEP	A375_MHC_IP_R1	1	374.2734069824219	3	373.873447	1118.59851	0.57663	0.00021559	-1.1154	-0.00041702	-0.53878	-0.00020144	373.8733524053615	39.213	0.7612	39.213	38.73	39.491	0					22	14	2	0	0	0	0.36673	1	13363	13363		38.615	24.709	1	13714000			45196	8824	33025	33290	44125	44125					0.04395673665612776
RSNKLHFAF	9	Unmodified	_RSNKLHFAF_					0	0	0		ENSG00000187446|ENST00000334660|CHP1	ENSG00000187446|ENST00000334660|CHP1	ENSG00000187446|ENST00000334660|CHP1	MULTI-SECPEP	A375_MHC_IP_R2	2	374.2733459472656	3	373.873447	1118.59851	0.12581	4.7039E-05	-1.1407	-0.00042648	-1.0149	-0.00037944	373.8733517556794	38.011	0.76672	38.786	38.534	39.3	0.77451					32	14	4	0	0	0	0.41731	1	13949	13949		35.612	19.463	1	11258000			45197	8824	33025	33290	44126	44126					0.04395673665612776
RSNLLRHIF	9	Unmodified	_RSNLLRHIF_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-SECPEP	A375_MHC_IP_R1	1	386.6123352050781	3	385.896363	1154.66726	0.21958	8.4737E-05	0.11642	4.4928E-05	0.33601	0.00012966	385.8964037216631	34.633	0.40576	34.633	34.353	34.759	0					12	7	2	0	0	0	0.78753	1	11440	11440		8.1555	8.1555	1	3631200			45198	8951	33026	33291	44127	44127					0.09611337965293387
RSNLTGFKQL	10	Unmodified	_RSNLTGFKQL_					0	0	0		ENSG00000112706|ENST00000369950|IMPG1	ENSG00000112706|ENST00000369950|IMPG1	ENSG00000112706|ENST00000369950|IMPG1	MULTI-SECPEP	A375_MHC_IP_R1	1	388.2936096191406	3	388.555895	1162.64586	0.40748	0.00015833	-0.41135	-0.00015983	-0.0038773	-1.5065E-06	388.55556993092756	22.95	0.20132	22.95	22.773	22.974	0					5	3	2	0	0	0	0.91773	1	6204	6204		4.1166	0	1	1620900			45199	3106	33027	33292	44128	44128					0.071039081459503
RSNNINTLF	9	Unmodified	_RSNNINTLF_					0	0	0		ENSG00000125124|ENST00000245157|BBS2	ENSG00000125124|ENST00000245157|BBS2	ENSG00000125124|ENST00000245157|BBS2	MULTI-SECPEP	A375_MHC_IP_R2	2	539.6729736328125	2	539.78563	1077.55671	-1.2156	-0.00065616	-1.6385	-0.00088444	-2.8541	-0.0015406	539.7846411409664	58.665	0.96536	59.414	59.083	60.049	0.74894					33	18	2	0	0	0	0.31606	1	22251	22251		47.749	3.8904	1	5976500			45200	3942	33028	33293	44129	44129					0.02103073186435722
RSNSFNSTF	9	Unmodified	_RSNSFNSTF_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	530.6929931640625	2	530.246338	1058.47812	-0.86178	-0.00045695	3.0515	0.001618	2.1897	0.0011611	530.7495831161896	36.82	0.45616	36.82	36.489	36.945	0					18	8	3	0	0	0	0.54812	1	12371	12371		19.362	0	1	1660500			45201	6633	33029	33294	44130	44130					-0.04877779118669423
RSPDESHRMW	10	Unmodified	_RSPDESHRMW_					0	0	0		ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	MULTI-MSMS	A375_MHC_IP_R1	1	434.6000061035156	3	434.199894	1299.57785	-0.38781	-0.00016839	0.40325	0.00017509	0.01544	6.7039E-06	434.200105597158	23.406	0.30663	23.406	23.227	23.533	0					9	5	2	0	0	0	0.014231	1	6427	6427		89.533	77.306	1	8876700			45202	4746	33030	33295	44131	44131					-0.059952847763725
RSPDESHRMW	10	Unmodified	_RSPDESHRMW_					0	0	0		ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	MULTI-MSMS	A375_MHC_IP_R2	2	434.599609375	3	434.199894	1299.57785	-0.59087	-0.00025655	-0.020166	-8.7562E-06	-0.61103	-0.00026531	434.1998817950647	20.921	0.50663	21.531	21.312	21.819	0.61029					15	9	2	0	0	0	0.36923	1	6567	6567		35.996	28.05	1	1217400			45203	4746	33030	33295	44132	44132					-0.059952847763725
RSPDESHRMW	10	Unmodified	_RSPDESHRMW_					0	0	0		ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	MULTI-MSMS	A375_MHC_IP_R2	2	434.5995788574219	3	434.199894	1299.57785	-0.60478	-0.0002626	-0.028119	-1.2209E-05	-0.6329	-0.00027481	434.2000066529388	22.416	0.51057	23.035	22.744	23.255	0.61932					15	9	2	0	0	0	0.58344	1	7163	7163		22.109	16.91	1	1517600			45204	4746	33030	33295	44133	44133					-0.059952847763725
RSPEISFGKHQ	11	Unmodified	_RSPEISFGKHQ_					0	0	0			REV__ENST00000412120.2_1_1:1853728-1858343:-|nuORF	REV__ENST00000412120.2_1_1:1853728-1858343:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	429.291748046875	3	429.226438	1284.65748	0.063583	2.7292E-05	3.7811	0.001623	3.8447	0.0016503	429.22867823590275	47.916	0.65581	47.916	47.567	48.223	0					23	12	3	0	0	0	0.59376	1	16874	16874		15.467	6.2227	1	1154700	+		45205	19314	33031	33296	44134	44134					0.02654105169290233
RSPEISFGKHQ	11	Unmodified	_RSPEISFGKHQ_					0	0	0			REV__ENST00000412120.2_1_1:1853728-1858343:-|nuORF	REV__ENST00000412120.2_1_1:1853728-1858343:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	429.226438	1284.65748	0.063583	2.7292E-05	3.7811	0.001623	3.8447	0.0016503	429.22867823590275	47.916	0.65581	47.916	47.567	48.223	0	0.011552	-0.0025878	NaN	15.467	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1154700	+		45206	19314	33031	33296							0.02654105169290233
RSPEISFGKHQ	11	Unmodified	_RSPEISFGKHQ_					0	0	0			REV__ENST00000412120.2_1_1:1853728-1858343:-|nuORF	REV__ENST00000412120.2_1_1:1853728-1858343:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	429.226438	1284.65748	-0.015801	-6.7822E-06	6.0185	0.0025833	6.0027	0.0025765	429.22886844974767	47.131	0.45879	47.893	47.715	48.174	0.76128	-0.011552	0.00029327	NaN	15.467	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1477500	+		45207	19314	33031	33296							0.02654105169290233
RSPFHLRTL	9	Unmodified	_RSPFHLRTL_					0	0	0			REV__ENST00000495756.5_1_3:112255248-112280627:-|nuORF	REV__ENST00000495756.5_1_3:112255248-112280627:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	376.6214599609375	3	376.220847	1125.64071	0.74035	0.00027853	0.89341	0.00033612	1.6338	0.00061466	376.2210517197318	48.576	0.50607	48.576	48.274	48.78	0					22	9	3	0	0	0	0.70902	1	17136	17136		6.1918	1.2948	1	4495900	+		45208	25450	33032	33297	44135	44135					0.08291649073998997
RSPFHLRTL	9	Unmodified	_RSPFHLRTL_					0	0	0			REV__ENST00000495756.5_1_3:112255248-112280627:-|nuORF	REV__ENST00000495756.5_1_3:112255248-112280627:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	376.220847	1125.64071	0.74035	0.00027853	0.89341	0.00033612	1.6338	0.00061466	376.2210517197318	48.576	0.50607	48.576	48.274	48.78	0	0.089301	-3.8717E-05	NaN	6.1918	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4495900	+		45209	25450	33032	33297							0.08291649073998997
RSPHTALGWL	10	Unmodified	_RSPHTALGWL_					0	0	0			REV__ENSG00000125746|ENST00000245925|EML2	REV__ENSG00000125746|ENST00000245925|EML2	MSMS	A375_MHC_IP_R2	2	379.923828125	3	379.876969	1136.60908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.494	1	22.113	21.613	22.613	0.61932								0	0	0	0.15287	1	6772	6772		11.518	0	1		+		45210	18360	33033	33298	44136	44136					0.04623656320018199
RSPLLNNQW	9	Unmodified	_RSPLLNNQW_					0	0	0			REV__ENST00000569365.6_1_16:18794333-18800349:-|nuORF	REV__ENST00000569365.6_1_16:18794333-18800349:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	563.67431640625	2	564.301447	1126.58834	-0.29583	-0.00016694	4.4337	0.0025019	4.1378	0.002335	564.3010249841323	47.304	0.50934	48.066	47.817	48.326	0.76128					19	9	4	0	0	0	0.75164	1	17838	17838		13.906	2.2658	1	2672500	+		45211	18778	33034	33299	44137	44137					0.030110659403590034
RSPPATRF	8	Unmodified	_RSPPATRF_					0	0	0		ENST00000379499.3_1_X:21675905-21676427:-|nuORF	ENST00000379499.3_1_X:21675905-21676427:-|nuORF	ENST00000379499.3_1_X:21675905-21676427:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	466.6581115722656	2	466.259051	930.503549	-0.25925	-0.00012088	-1.1913	-0.00055543	-1.4505	-0.00067631	466.2582559082132	28.617	0.76091	28.617	28.44	29.201	0					23	14	2	0	0	0	0.8957	1	8865	8865		28.487	9.2299	1	3569200			45212	11336	33035	33300	44138	44138					0.03551740194427566
RSPQSFFDT	9	Unmodified	_RSPQSFFDT_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	A375_MHC_IP_R2	2	362.5730285644531	3	362.173451	1083.49852	-0.46758	-0.00016934	-0.029888	-1.0825E-05	-0.49746	-0.00018017	362.1733223184602	20.046	1.2173	20.656	20.095	21.312	0.61029					38	23	2	0	0	0	0.61998	1	6231	6231		9.544	2.4423	1	947690			45213	2844	33036	33301	44139	44139					-0.0398860845884883
RSPRLNISW	9	Unmodified	_RSPRLNISW_					0	0	0		ENST00000460933.5_1_3:133928664-133941275:-|nuORF	ENST00000460933.5_1_3:133928664-133941275:-|nuORF	ENST00000460933.5_1_3:133928664-133941275:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	377.2806701660156	3	376.880602	1127.61998	0.15975	6.0207E-05	-0.41644	-0.00015695	-0.25669	-9.6743E-05	376.8803766118021	45.359	0.50679	46.124	45.846	46.353	0.76519					15	9	2	0	0	0	0.44183	1	16966	16966		22.658	0	1	3648500			45214	12176	33037	33302	44140	44140					0.06127058694301013
RSPRLNISW	9	Unmodified	_RSPRLNISW_					0	0	0		ENST00000460933.5_1_3:133928664-133941275:-|nuORF	ENST00000460933.5_1_3:133928664-133941275:-|nuORF	ENST00000460933.5_1_3:133928664-133941275:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	376.880602	1127.61998	0.33373	0.00012577	-0.27675	-0.0001043	0.056977	2.1474E-05	376.8804739901902	46.291	0.50241	46.291	46.043	46.545	0	0.083392	3.9655E-05	NaN	22.658	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2039000			45215	12176	33037	33302							0.06127058694301013
RSPRLNISW	9	Unmodified	_RSPRLNISW_					0	0	0		ENST00000460933.5_1_3:133928664-133941275:-|nuORF	ENST00000460933.5_1_3:133928664-133941275:-|nuORF	ENST00000460933.5_1_3:133928664-133941275:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	376.880602	1127.61998	0.15975	6.0207E-05	-0.41644	-0.00015695	-0.25669	-9.6743E-05	376.8803766118021	45.359	0.50679	46.124	45.846	46.353	0.76519	-0.083392	-0.00011829	NaN	22.658	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3648500			45216	12176	33037	33302							0.06127058694301013
RSQDEWQWL	9	Unmodified	_RSQDEWQWL_					0	0	0			REV__ENST00000590639.1_1_17:42152067-42152649:+|nuORF	REV__ENST00000590639.1_1_17:42152067-42152649:+|nuORF	MSMS	A375_MHC_IP_R1	1	416.43084716796875	3	416.531638	1246.57309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.339	1	36.339	35.839	36.839	0								0	0	0	0.15486	1	12157	12157		4.897	0.49086	1		+		45217	26437	33038	33303	44141	44141					-0.04033845647495582
RSQDHFHVF	9	Unmodified	_RSQDHFHVF_					0	0	0		ENSG00000116001|ENST00000433529|TIA1;TIA1|p.N156Qfs*6|1|0.41|ENSG00000116001|chr2:70224563-70224564|-/A|frameshift_variant;nc|ENSG00000116001|P31483-3|TIA1	ENSG00000116001|ENST00000433529|TIA1	ENSG00000116001|ENST00000433529|TIA1	MULTI-SECPEP	A375_MHC_IP_R1	1	391.9454040527344	3	391.524707	1171.55229	0.20446	8.0052E-05	2.2219	0.00086992	2.4263	0.00094997	391.5260552134739	33.723	0.5055	33.723	33.445	33.95	0					15	9	3	0	0	0	0.65623	1	11057	11057		22.775	11.975	1	1993800			45218	3359	33039	33304	44142	44142					-0.026623912364811986
RSQGFPRI	8	Unmodified	_RSQGFPRI_					0	0	0		ENST00000444757.5_3_6:33168262-33168322:+|nuORF	ENST00000444757.5_3_6:33168262-33168322:+|nuORF	ENST00000444757.5_3_6:33168262-33168322:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	480.66119384765625	2	480.772326	959.530098	-0.23908	-0.00011494	0.083874	4.0324E-05	-0.15521	-7.4619E-05	480.77235376571196	39.227	0.71128	39.227	38.983	39.694	0					29	13	3	0	0	0	0.31691	1	13392	13392		57.471	57.471	1	79650000			45219	12020	33040	33305	44143	44143					0.04871429085756063
RSQGFPRI	8	Unmodified	_RSQGFPRI_					0	0	0		ENST00000444757.5_3_6:33168262-33168322:+|nuORF	ENST00000444757.5_3_6:33168262-33168322:+|nuORF	ENST00000444757.5_3_6:33168262-33168322:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	480.772326	959.530098	-0.23908	-0.00011494	0.083874	4.0324E-05	-0.15521	-7.4619E-05	480.77235376571196	39.227	0.71128	39.227	38.983	39.694	0	0.10493	-6.8706E-05	NaN	57.471	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79650000			45220	12020	33040	33305							0.04871429085756063
RSQPQHFTY	9	Unmodified	_RSQPQHFTY_					0	0	0		nc|ENSG00000101096|Q13469-5|NFATC2;nc|ENSG00000101096|Q13469-3|NFATC2;nc|ENSG00000101096|Q13469-4|NFATC2;ENSG00000101096|ENST00000371564|NFATC2;nc|ENSG00000101096|Q13469|NFATC2	nc|ENSG00000101096|Q13469-5|NFATC2	nc|ENSG00000101096|Q13469-5|NFATC2	MULTI-SECPEP	A375_MHC_IP_R1	1	582.683349609375	2	582.283254	1162.55196	-0.41276	-0.00024034	0.51186	0.00029804	0.099095	5.7701E-05	582.2838288280226	23.355	0.35764	23.355	23.176	23.533	0					11	6	3	0	0	0	0.5205	1	6428	6428		45.74	16.658	1	6929300			45221	2250	33041	33306	44144	44144					-0.022818109563104372
RSQPQHFTY	9	Unmodified	_RSQPQHFTY_					0	0	0		nc|ENSG00000101096|Q13469-5|NFATC2;nc|ENSG00000101096|Q13469-3|NFATC2;nc|ENSG00000101096|Q13469-4|NFATC2;ENSG00000101096|ENST00000371564|NFATC2;nc|ENSG00000101096|Q13469|NFATC2	nc|ENSG00000101096|Q13469-5|NFATC2	nc|ENSG00000101096|Q13469-5|NFATC2	MULTI-MSMS	A375_MHC_IP_R2	2	582.6830444335938	2	582.283254	1162.55196	-0.7007	-0.00040801	0.56061	0.00032643	-0.14009	-8.1574E-05	582.2834017850478	20.85	0.60777	21.461	21.109	21.717	0.61029					16	11	2	0	0	0	0.37338	1	6531	6531		26.021	4.4837	1	1224400			45222	2250	33041	33306	44145	44145					-0.022818109563104372
RSQPQHFTY	9	Unmodified	_RSQPQHFTY_					0	0	0		nc|ENSG00000101096|Q13469-5|NFATC2;nc|ENSG00000101096|Q13469-3|NFATC2;nc|ENSG00000101096|Q13469-4|NFATC2;ENSG00000101096|ENST00000371564|NFATC2;nc|ENSG00000101096|Q13469|NFATC2	nc|ENSG00000101096|Q13469-5|NFATC2	nc|ENSG00000101096|Q13469-5|NFATC2	MULTI-SECPEP	A375_MHC_IP_R2	2	389.2592468261719	3	388.524595	1162.55196	-0.48431	-0.00018817	0.43936	0.0001707	-0.044951	-1.7464E-05	388.52486037257376	20.917	1.0667	21.527	20.701	21.768	0.61029					36	20	3	0	0	0	0.65498	1	6546	6546		25.997	15.173	1	1578800			45223	2250	33041	33306	44146	44146					-0.022818109563104372
RSQRDVVPR	9	Unmodified	_RSQRDVVPR_					0	0	0			REV__nc|ENSG00000288701|Q5JSZ5|PRRC2B	REV__nc|ENSG00000288701|Q5JSZ5|PRRC2B	MSMS	A375_MHC_IP_R1	1	371.5744934082031	3	371.547623	1111.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.81	1	39.81	39.31	40.31	0								0	0	0	0.15486	1	13639	13639		0.86438	0.16671	1		+		45224	27556	33042	33307	44147	44147					0.0696927306323687
RSQSAINTW	9	Unmodified	_RSQSAINTW_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	A375_MHC_IP_R1	1	532.1693115234375	2	531.76998	1061.52541	-0.90698	-0.0004823	-0.15225	-8.096E-05	-1.0592	-0.00056326	531.7698647669125	36.71	0.65678	36.71	36.339	36.996	0					24	12	3	0	0	0	0.030891	1	12276	12276		74.2	24.267	1	8715600			45225	8598	33043	33308	44148	44148					-0.0028949984766768466
RSQSAINTW	9	Unmodified	_RSQSAINTW_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	A375_MHC_IP_R2	2	532.1696166992188	2	531.76998	1061.52541	-0.83943	-0.00044638	-0.066526	-3.5377E-05	-0.90596	-0.00048176	531.7699200947378	35.847	0.56073	36.61	36.333	36.894	0.76338					26	10	3	0	0	0	0.017012	1	12987	12987		87.258	28.579	1	11658000			45226	8598	33043	33308	44149	44149					-0.0028949984766768466
RSQYKRVYI	9	Unmodified	_RSQYKRVYI_					0	0	0			REV__nc|ENSG00000168216|Q9NUN5-2|LMBRD1	REV__nc|ENSG00000168216|Q9NUN5-2|LMBRD1	MULTI-MSMS	A375_MHC_IP_R2	2	405.6029357910156	3	404.899773	1211.67749	-0.29418	-0.00011911	-0.41379	-0.00016754	-0.70797	-0.00028666	404.89934013208045	19.801	1.1673	20.412	19.892	21.059	0.61029					36	22	3	0	0	0	0.58268	1	6080	6080		15.739	0	1	2508400	+		45227	20833	33044	33309	44150	44150					0.08011900899919056
RSRDGVEQQR	10	Unmodified	_RSRDGVEQQR_					0	0	0			REV__ENST00000591231.5_1_19:34112864-34158706:+|nuORF	REV__ENST00000591231.5_1_19:34112864-34158706:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	410.95831298828125	3	410.881441	1229.62249	0.1793	7.3671E-05	-0.85605	-0.00035173	-0.67675	-0.00027806	410.8808090295475	20.484	1.0689	20.484	19.827	20.895	0					27	18	2	0	0	0	0.91057	1	5040	5040		10.315	2.3698	1	8723000	+		45228	24790	33045	33310	44151	44151					0.016868623613163436
RSRDISREEW	10	Unmodified	_RSRDISREEW_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;ENST00000485862.5_1_9:130928478-130929503:-|nuORF;ENST00000461765.5_1_9:130928478-130929943:-|nuORF	nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-MSMS	A375_MHC_IP_R2	2	445.6248779296875	3	445.225097	1332.65346	-0.72748	-0.00032389	0.13518	6.0185E-05	-0.5923	-0.00026371	445.2251594902861	22.967	0.35721	23.597	23.42	23.777	0.63014					12	6	3	0	0	0	0.70565	1	7355	7355		9.7643	5.0483	1	7483200			45229	5734	33046	33311	44152	44152					0.00044015675575792557
RSRDISREEW	10	Unmodified	_RSRDISREEW_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;ENST00000485862.5_1_9:130928478-130929503:-|nuORF;ENST00000461765.5_1_9:130928478-130929943:-|nuORF	nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-SECPEP	A375_MHC_IP_R2	2	445.6250915527344	3	445.225097	1332.65346	-0.70095	-0.00031208	0.010936	4.869E-06	-0.69001	-0.00030721	445.22514846278045	20.148	0.7613	20.759	20.449	21.21	0.61029					43	14	4	0	0	0	0.93407	1	6204	6204		7.846	2.7985	1	23246000			45230	5734	33046	33311	44153	44153					0.00044015675575792557
RSRDNFAVW	9	Unmodified	_RSRDNFAVW_					0	0	0		chr22:22557580-22558971|460|200.69|0.76|8.04|-|1|PRAME,PRAME|1	chr22:22557580-22558971|460|200.69|0.76|8.04|-|1|PRAME,PRAME|1	chr22:22557580-22558971|460|200.69|0.76|8.04|-|1|PRAME,PRAME|1	MULTI-SECPEP	A375_MHC_IP_R1	1	384.5964660644531	3	384.19659	1149.56794	0.51718	0.0001987	-0.42544	-0.00016345	0.091747	3.5249E-05	384.19635498480443	49.759	0.76487	49.759	49.439	50.204	0					33	14	3	0	0	0	0.5212	1	17575	17575		19.626	12.996	1	7577200			45231	470	33047	33312	44154	44154					-0.0008610471943484299
RSRDNFAVW	9	Unmodified	_RSRDNFAVW_					0	0	0		chr22:22557580-22558971|460|200.69|0.76|8.04|-|1|PRAME,PRAME|1	chr22:22557580-22558971|460|200.69|0.76|8.04|-|1|PRAME,PRAME|1	chr22:22557580-22558971|460|200.69|0.76|8.04|-|1|PRAME,PRAME|1	MULTI-MSMS	A375_MHC_IP_R2	2	384.9305725097656	3	384.19659	1149.56794	-0.22769	-8.7476E-05	-0.056391	-2.1665E-05	-0.28408	-0.00010914	384.1965252327758	48.82	1.0156	49.577	49.231	50.247	0.75737					41	19	3	0	0	0	0.36834	1	18308	18308		19.626	10.082	1	8629700			45232	470	33047	33312	44155	44155					-0.0008610471943484299
RSRERRRRERE	11	Unmodified	_RSRERRRRERE_					0	0	0			REV__ENSG00000124380|ENST00000244227|SNRNP27	REV__ENSG00000124380|ENST00000244227|SNRNP27	MSMS	A375_MHC_IP_R1	1	793.1830444335938	2	793.446351	1584.87815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.09	1	137.09	136.59	137.59	0								0	0	0	0.16355	1	52784	52784		0.26902	0	1		+		45233	18300	33048	33313	44156	44156					0.10910563269271734
RSRFPQTF	8	Unmodified	_RSRFPQTF_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51643260-51645023:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-SECPEP	A375_MHC_IP_R1	1	520.17724609375	2	519.777608	1037.54066	-0.49936	-0.00025955	-0.39132	-0.0002034	-0.89068	-0.00046296	519.7775164676507	33.976	0.50539	33.976	33.698	34.203	0					23	9	3	0	0	0	0.95424	1	11150	11150		13.906	5.1606	1	6731100			45234	8215	33049	33314	44157	44157					0.023394117401721815
RSRGFGFITF	10	Unmodified	_RSRGFGFITF_					0	0	0		ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENSG00000102317|ENST00000376759|RBM3	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	397.2832946777344	3	396.548852	1186.62473	-0.18086	-7.1721E-05	0.09542	3.7839E-05	-0.085444	-3.3883E-05	396.8831779854044	87.211	0.35654	87.211	86.983	87.34	0					11	6	2	0	0	0	0.65106	1	32030	32030		17.049	4.1926	1	1764800			45235	2374	33050	33315	44158	44158					0.03887942837081937
RSRGFGFVTF	10	Unmodified	_RSRGFGFVTF_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000593093.5_1_19:1271113-1271461:+|nuORF;nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;ENST00000579531.5_1_17:55334408-55351634:+|nuORF;ENST00000584476.1_1_17:55334873-55339700:+|nuORF;nc|ENSG00000153944|Q96DH6-2|MSI2;ENSG00000153944|ENST00000284073|MSI2;ENSG00000135097|ENST00000257552|MSI1	ENSG00000122566|ENST00000618183|HNRNPA2B1;nc|ENSG00000099622|Q14011|CIRBP;ENST00000579531.5_1_17:55334408-55351634:+|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-SECPEP	A375_MHC_IP_R2	2	392.2767028808594	3	391.876969	1172.60908	-0.18926	-7.4165E-05	-0.048134	-1.8862E-05	-0.23739	-9.3028E-05	391.8769088540576	75.608	0.40907	76.348	76.129	76.538	0.74052					11	7	2	0	0	0	0.93578	1	28739	28739		5.7834	1.2546	1	2079200			45236	3793;2079;4645	33051	33316	44159	44159					0.02967656320038259
RSRGRRVPHT	10	Unmodified	_RSRGRRVPHT_					0	0	0		ENST00000553142.5_1_12:58026631-58026883:-|nuORF	ENST00000553142.5_1_12:58026631-58026883:-|nuORF	ENST00000553142.5_1_12:58026631-58026883:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	611.7554931640625	2	611.355411	1220.69627	-0.68757	-0.00042035	0.89097	0.0005447	0.20341	0.00012435	611.355568860727	141.89	1.7863	141.89	140.65	142.44	0					43	34	2	0	0	0	0.72378	1	54380	54380		1.6526	1.6526	1	958420			45237	13399	33052	33317	44160	44160					0.09474875314299425
RSRIQVWLY	9	Unmodified	_RSRIQVWLY_					0	0	0		ENSG00000182004|ENST00000414487|SNRPE	ENSG00000182004|ENST00000414487|SNRPE	ENSG00000182004|ENST00000414487|SNRPE	MULTI-MSMS	A375_MHC_IP_R1	1	407.96832275390625	3	407.568135	1219.68258	-0.56891	-0.00023187	0.70526	0.00028744	0.13635	5.557E-05	407.5684625241812	68.231	0.61034	68.231	67.904	68.514	0					28	11	3	0	0	0	0.46357	2	24711	24711;24745		21.59	7.9753	1	5139500			45238	8370	33053	33318	44161;44162	44161					0.08152204762518522
RSRIQVWLY	9	Unmodified	_RSRIQVWLY_					0	0	0		ENSG00000182004|ENST00000414487|SNRPE	ENSG00000182004|ENST00000414487|SNRPE	ENSG00000182004|ENST00000414487|SNRPE	MULTI-MSMS	A375_MHC_IP_R2	2	407.968017578125	3	407.568135	1219.68258	-0.0057966	-2.3625E-06	-0.12431	-5.0665E-05	-0.13011	-5.3027E-05	407.5680326832198	67.186	0.76231	67.922	67.648	68.41	0.73631					30	14	3	0	0	0	0.3489	2	25445	25445;25521		27.223	8.8501	1	4416100			45239	8370	33053	33318	44163;44164	44163					0.08152204762518522
RSRKHKAIAP	10	Unmodified	_RSRKHKAIAP_					0	0	0		ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	MULTI-SECPEP	A375_MHC_IP_R2	2	583.1077880859375	2	582.359631	1162.70471	-0.19127	-0.00011139	0.9684	0.00056395	0.77712	0.00045256	582.359396145893	149.33	1.1969	149.35	148.6	149.8	0.01825					49	35	3	0	0	0	0.94897	1	57772	57772		1.4819	0.79152	1	101770			45240	10040	33054	33319	44165	44165					0.12986429230954855
RSRKKAKRKRV	11	Unmodified	_RSRKKAKRKRV_					0	0	0		nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MSMS	A375_MHC_IP_R2	2	706.9703369140625	2	706.973485	1411.93242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.141	1	78.884	78.384	79.384	0.74293								0	0	0	0.16358	1	29674	29674		0	0	1				45241	14477	33055	33320	44166	44166					0.24292807158758478
RSRKLAAVTY	10	Unmodified	_RSRKLAAVTY_					0	0	0		ENSG00000122545|ENST00000350320|SEPTIN7;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF;ENST00000469999.1_1_7:152065296-152065533:+|nuORF;ENST00000492940.1_1_7:35930257-35938044:+|nuORF;ENST00000420492.2_1_9:101369884-101370217:+|nuORF	ENSG00000122545|ENST00000350320|SEPTIN7	ENSG00000122545|ENST00000350320|SEPTIN7	MULTI-MSMS	A375_MHC_IP_R2	2	389.2630920410156	3	388.899773	1163.67749	-0.46819	-0.00018208	0.2329	9.0575E-05	-0.23529	-9.1505E-05	389.2345939880211	19.938	0.55556	20.548	20.248	20.803	0.61029					12	10	2	0	0	0	0.68638	1	6202	6202		9.2438	3.8411	1	701130			45242	3789	33056	33321	44167	44167					0.10219900899915046
RSRLTATSASW	11	Unmodified	_RSRLTATSASW_					0	0	0		AluSp_dup17171|chr6:42956085-42956345:+|3.6520011529737326|0.2092895351215914|4.13|472.0|11|1|anti-sense;ENST00000603669.5_1_19:35491281-35493429:+|nuORF	AluSp_dup17171|chr6:42956085-42956345:+|3.6520011529737326|0.2092895351215914|4.13|472.0|11|1|anti-sense	AluSp_dup17171|chr6:42956085-42956345:+|3.6520011529737326|0.2092895351215914|4.13|472.0|11|1|anti-sense	MULTI-MSMS	A375_MHC_IP_R2	2	412.9542236328125	3	412.554554	1234.64183	-0.014252	-5.8795E-06	-0.31418	-0.00012962	-0.32843	-0.0001355	412.554376625111	31.333	0.35859	32.051	31.923	32.282	0.71857					12	6	2	0	0	0	0.56388	1	11094	11094		26.121	2.1568	1	5416800			45243	115	33057	33322	44168	44168					0.03389818652203758
RSRPHTRLF	9	Unmodified	_RSRPHTRLF_					0	0	0		ENSG00000102699|ENST00000381989|PARP4;ENST00000484989.1_1_13:25026542-25029254:-|nuORF	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	A375_MHC_IP_R2	2	390.95965576171875	3	390.559863	1168.65776	-0.44134	-0.00017237	1.8095	0.0007067	1.3681	0.00053433	390.56067772546714	18.921	0.58413	19.524	19.452	20.037	0.60308					22	11	2	0	0	0	0.56584	1	5731	5731		16.566	7.0219	1	12807000			45244	2388	33058	33323	44169	44169					0.08017569679782355
RSRRPLTRGA	10	Unmodified	_RSRRPLTRGA_					0	0	0			REV__ENSG00000153404|ENST00000637938|PLEKHG4B	REV__ENSG00000153404|ENST00000637938|PLEKHG4B	MSMS	A375_MHC_IP_R2	2	390.6170959472656	3	390.57065	1168.69012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.36	1	104.12	103.62	104.62	0.76428								0	0	0	0.15152	1	39145	39145		14.957	1.3423	1		+		45245	19841	33059	33324	44170	44170					0.11252357082776143
RSRRQERRQPR	11	Unmodified	_RSRRQERRQPR_					0	0	0			REV__ENST00000374763.6_2_1:21923469-21929399:-|nuORF	REV__ENST00000374763.6_2_1:21923469-21929399:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	509.36126708984375	3	508.9612	1523.86177	-0.67841	-0.00034528	0.74053	0.0003769	0.062124	3.1619E-05	508.96172778633934	133.09	0.96284	133.25	132.74	133.7	0.16487					43	18	3	0	0	0	0.99507	1	52233	52233		3.8459	0	1	7830200	+		45246	24114	33060	33325	44171	44171					0.1207948210314953
RSRRRRRRRRH	11	Unmodified	_RSRRRRRRRRH_					0	0	0		ENST00000366641.3_1_1:231557623-231557677:-|nuORF	ENST00000366641.3_1_1:231557623-231557677:-|nuORF	ENST00000366641.3_1_1:231557623-231557677:-|nuORF	MSMS	A375_MHC_IP_R1	1	824.6134643554688	2	824.513029	1647.0115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.531	1	92.531	92.031	93.031	0								0	0	0	0.16353	1	34006	34006		0.35063	0.35063	1				45247	11065	33061	33326	44172	44172					0.2138789195626032
RSRRRRRWALW	11	Unmodified	_RSRRRRRWALW_					0	0	0			REV__ENST00000315691.7_1_3:143690776-143690935:+|nuORF	REV__ENST00000315691.7_1_3:143690776-143690935:+|nuORF	MSMS	A375_MHC_IP_R1	1	799.9718627929688	2	799.971808	1597.92906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.471	1	76.471	75.971	76.971	0								0	0	0	0.1636	1	27876	27876		0	0	1		+		45248	23535	33062	33327	44173	44173					0.15401557104792118
RSRSAAVILL	10	Unmodified	_RSRSAAVILL_					0	0	0		ENST00000464753.1_1_13:28014569-28024306:-|nuORF	ENST00000464753.1_1_13:28014569-28024306:-|nuORF	ENST00000464753.1_1_13:28014569-28024306:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	362.9638977050781	3	362.564502	1084.67168	-0.51905	-0.00018819	-0.30445	-0.00011038	-0.8235	-0.00029857	362.56437734676166	59.07	0.65858	59.817	59.489	60.148	0.74714					33	12	4	0	0	0	0.59998	1	22315	22315		20.871	20.871	1	13611000			45249	12232	33063	33328	44174	44174					0.13272802388246419
RSRSFDYNY	9	Unmodified	_RSRSFDYNY_					0	0	0		ENST00000495785.1_1_1:24298338-24304405:-|nuORF;ENST00000473754.1_1_1:24298061-24301527:-|nuORF;ENST00000473858.5_1_1:24294155-24306819:-|nuORF;nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;ENST00000338597.9_1_1:24297634-24304405:-|nuORF;ENST00000485841.5_1_1:24297634-24301602:-|nuORF;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000188529|ENST00000492112|SRSF10	ENST00000495785.1_1_1:24298338-24304405:-|nuORF	ENST00000495785.1_1_1:24298338-24304405:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	403.58770751953125	3	403.187871	1206.54179	-0.49636	-0.00020013	0.36734	0.00014811	-0.12903	-5.2021E-05	403.1881412247069	28.231	0.75643	28.231	27.887	28.643	0					43	14	5	0	0	0	0.27064	1	8662	8662		30.703	14.554	1	32426000			45250	8912	33064	33329	44175	44175					-0.05322418681566887
RSRSFDYNY	9	Unmodified	_RSRSFDYNY_					0	0	0		ENST00000495785.1_1_1:24298338-24304405:-|nuORF;ENST00000473754.1_1_1:24298061-24301527:-|nuORF;ENST00000473858.5_1_1:24294155-24306819:-|nuORF;nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;ENST00000338597.9_1_1:24297634-24304405:-|nuORF;ENST00000485841.5_1_1:24297634-24301602:-|nuORF;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000188529|ENST00000492112|SRSF10	ENST00000495785.1_1_1:24298338-24304405:-|nuORF	ENST00000495785.1_1_1:24298338-24304405:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	604.677734375	2	604.278169	1206.54179	-0.43721	-0.0002642	-0.32276	-0.00019504	-0.75997	-0.00045923	604.2779972779524	28.258	0.55452	28.258	27.987	28.541	0					21	10	3	0	0	0	0.052747	1	8685	8685		63.227	34.146	1	12142000			45251	8912	33064	33329	44176	44176					-0.05322418681566887
RSRSFDYNY	9	Unmodified	_RSRSFDYNY_					0	0	0		ENST00000495785.1_1_1:24298338-24304405:-|nuORF;ENST00000473754.1_1_1:24298061-24301527:-|nuORF;ENST00000473858.5_1_1:24294155-24306819:-|nuORF;nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;ENST00000338597.9_1_1:24297634-24304405:-|nuORF;ENST00000485841.5_1_1:24297634-24301602:-|nuORF;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000188529|ENST00000492112|SRSF10	ENST00000495785.1_1_1:24298338-24304405:-|nuORF	ENST00000495785.1_1_1:24298338-24304405:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	604.6776733398438	2	604.278169	1206.54179	-0.40319	-0.00024364	-0.30104	-0.00018191	-0.70423	-0.00042555	604.2781265226008	27.571	0.60788	28.25	27.945	28.553	0.67857					31	11	4	0	0	0	0.02331	1	9437	9437		80.676	49.408	1	11260000			45252	8912	33064	33329	44177	44177					-0.05322418681566887
RSRSFDYNY	9	Unmodified	_RSRSFDYNY_					0	0	0		ENST00000495785.1_1_1:24298338-24304405:-|nuORF;ENST00000473754.1_1_1:24298061-24301527:-|nuORF;ENST00000473858.5_1_1:24294155-24306819:-|nuORF;nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;ENST00000338597.9_1_1:24297634-24304405:-|nuORF;ENST00000485841.5_1_1:24297634-24301602:-|nuORF;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000188529|ENST00000492112|SRSF10	ENST00000495785.1_1_1:24298338-24304405:-|nuORF	ENST00000495785.1_1_1:24298338-24304405:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	403.58770751953125	3	403.187871	1206.54179	0.052923	2.1338E-05	-0.082556	-3.3286E-05	-0.029633	-1.1947E-05	403.1878973145829	27.582	0.70953	28.261	27.895	28.604	0.67857					37	13	4	0	0	0	0.57806	1	9418	9418		30.703	23.094	1	39454000			45253	8912	33064	33329	44178	44178					-0.05322418681566887
RSRTIVHTL	9	Unmodified	_RSRTIVHTL_					0	0	0		ENSG00000082515|ENST00000523037|MRPL22;nc|ENSG00000082515|Q9NWU5-2|MRPL22;nc|ENSG00000082515|Q9NWU5-3|MRPL22	ENSG00000082515|ENST00000523037|MRPL22	ENSG00000082515|ENST00000523037|MRPL22	MULTI-MSMS	A375_MHC_IP_R1	1	361.9525146484375	3	361.552485	1081.63563	0.39049	0.00014118	-0.97786	-0.00035355	-0.58737	-0.00021236	361.5522184498026	21.377	0.91356	21.377	20.793	21.706	0					33	17	2	0	0	0	0.14858	1	5589	5589		39.213	9.7758	1	3916200			45254	1762	33065	33330	44179	44179					0.09807345211402207
RSRTIVHTL	9	Unmodified	_RSRTIVHTL_					0	0	0		ENSG00000082515|ENST00000523037|MRPL22;nc|ENSG00000082515|Q9NWU5-2|MRPL22;nc|ENSG00000082515|Q9NWU5-3|MRPL22	ENSG00000082515|ENST00000523037|MRPL22	ENSG00000082515|ENST00000523037|MRPL22	MULTI-MSMS	A375_MHC_IP_R2	2	361.9522399902344	3	361.552485	1081.63563	-0.46704	-0.00016886	-0.71545	-0.00025867	-1.1825	-0.00042753	361.55243693128807	19.267	0.75872	19.87	19.633	20.392	0.60308					35	14	3	0	0	0	0.14858	1	5903	5903		32.898	2.1943	1	4819000			45255	1762	33065	33330	44180	44180					0.09807345211402207
RSRVHKHRP	9	Unmodified	_RSRVHKHRP_					0	0	0		ENSG00000180720|ENST00000682254|CHRM4	ENSG00000180720|ENST00000682254|CHRM4	ENSG00000180720|ENST00000682254|CHRM4	MULTI-MSMS	A375_MHC_IP_R2	2	391.6123962402344	3	391.56724	1171.67989	-0.51917	-0.00020329	-0.81622	-0.0003196	-1.3354	-0.00052289	391.5669289601734	23.105	0.71372	23.735	23.265	23.979	0.63014					22	13	2	0	0	0	0.6343	1	7396	7396		12.873	1.6014	1	13694000			45256	8310	33066	33331	44181	44181					0.10091794148229383
RSRWRRHSRKK	11	Unmodified	_RSRWRRHSRKK_					0	0	0			REV__OSBPL3|p.E269K|2|0.31|ENSG00000070882|chr7:24863265-24863265|C/T|missense_variant	REV__OSBPL3|p.E269K|2|0.31|ENSG00000070882|chr7:24863265-24863265|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	518.7300415039062	3	518.310052	1551.90833	-0.87949	-0.00045585	-0.30267	-0.00015687	-1.1822	-0.00061272	518.3097284562542	148.82	1.6689	148.82	148	149.67	0					103	35	4	0	0	0	1.0015	1	56548	56548		0.094841	0.094841	1	398490	+		45257	27704	33067	33332	44182	44182					0.15444966725067388
RSRWRRHSRKK	11	Unmodified	_RSRWRRHSRKK_					0	0	0			REV__OSBPL3|p.E269K|2|0.31|ENSG00000070882|chr7:24863265-24863265|C/T|missense_variant	REV__OSBPL3|p.E269K|2|0.31|ENSG00000070882|chr7:24863265-24863265|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	518.7091064453125	3	518.310052	1551.90833	-0.51881	-0.0002689	-0.61265	-0.00031754	-1.1315	-0.00058645	518.6439714170947	149.03	1.4029	149.05	148.29	149.69	0.018692					96	34	4	0	0	0	1.0015	1	57753	57753		0.094841	0.094841	1	334780	+		45258	27704	33067	33332	44183	44183					0.15444966725067388
RSRWRRPWRVR	11	Unmodified	_RSRWRRPWRVR_					0	0	0		ENST00000481661.1_1_14:59931594-59931975:-|nuORF	ENST00000481661.1_1_14:59931594-59931975:-|nuORF	ENST00000481661.1_1_14:59931594-59931975:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	402.9402160644531	4	403.489542	1609.92906	-0.51561	-0.00020804	-1.6405	-0.00066192	-2.1561	-0.00086996	403.4888109135772	27.282	0.45488	27.282	27.027	27.482	0					10	8	2	0	0	0	1.0015	1	8160	8160		0	0	1	1535900			45259	12516	33068	33333	44184	44184					0.14849557104730593
RSSFFIKIRP	10	Unmodified	_RSSFFIKIRP_					0	0	0		nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-7|EPB41	nc|ENSG00000159023|P11171-6|EPB41	nc|ENSG00000159023|P11171-6|EPB41	MSMS	A375_MHC_IP_R2	2	625.5875244140625	2	625.87204	1249.72953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.44	1	116.13	115.63	116.63	0.68999								0	0	0	0.15465	1	43515	43515		5.7319	2.1354	1				45260	6343	33069	33334	44185	44185					0.1146506431364287
RSSGRVYYF	9	Unmodified	_RSSGRVYYF_					0	0	0		ENSG00000127445|ENST00000247970|PIN1	ENSG00000127445|ENST00000247970|PIN1	ENSG00000127445|ENST00000247970|PIN1	MULTI-MSMS	A375_MHC_IP_R2	2	379.2611083984375	3	378.861207	1133.56179	-0.12425	-4.7072E-05	0.2255	8.5432E-05	0.10125	3.836E-05	378.8612106678123	35.085	0.70689	35.848	35.324	36.03	0.76338					26	13	3	0	0	0	0.50892	1	12681	12681		14.218	1.9775	1	4677000			45261	4091	33070	33335	44186	44186					0.0003537704901646066
RSSKAALGAP	10	Unmodified	_RSSKAALGAP_					0	0	0		ENST00000603928.2_2_9:136890980-136891148:+|nuORF	ENST00000603928.2_2_9:136890980-136891148:+|nuORF	ENST00000603928.2_2_9:136890980-136891148:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	479.64862060546875	2	479.277441	956.540328	-0.2405	-0.00011527	0.24507	0.00011745	0.0045651	2.188E-06	479.2774316255571	109.94	4.5331	109.94	108.36	112.89	0					246	88	4	0	0	0	0.72189	1	39968	39968		2.4985	2.4985	1	18064000			45262	13900	33071	33336	44187	44187					0.06031992020314192
RSSKAALGAP	10	Unmodified	_RSSKAALGAP_					0	0	0		ENST00000603928.2_2_9:136890980-136891148:+|nuORF	ENST00000603928.2_2_9:136890980-136891148:+|nuORF	ENST00000603928.2_2_9:136890980-136891148:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	479.6767578125	2	479.277441	956.540328	-0.36367	-0.0001743	-0.0040912	-1.9608E-06	-0.36776	-0.00017626	479.2773251011022	115.33	5.995	116.02	113.03	119.03	0.68999					294	117	3	0	0	0	0.71466	1	44046	44046		5.7319	1.4026	1	60713000			45263	13900	33071	33336	44188	44188					0.06031992020314192
RSSKFAGTRFL	11	Unmodified	_RSSKFAGTRFL_					0	0	0		ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MULTI-MSMS	A375_MHC_IP_R1	1	424.2821350097656	3	423.906928	1268.69895	-0.13546	-5.7424E-05	-0.058146	-2.4648E-05	-0.19361	-8.2073E-05	423.90688211712325	34.46	0.40485	34.46	34.303	34.708	0					11	7	2	0	0	0	0.73341	1	11359	11359		5.6497	0.93378	1	889790			45264	3082	33072	33337	44189	44189					0.07535285928611302
RSSKFAGTRFL	11	Unmodified	_RSSKFAGTRFL_					0	0	0		ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MULTI-MSMS	A375_MHC_IP_R2	2	423.9278564453125	3	423.906928	1268.69895	-0.56154	-0.00023804	0.0022011	9.3307E-07	-0.55933	-0.00023711	423.90682577870365	33.492	0.30513	34.244	34.043	34.348	0.75225					13	5	3	0	0	0	0.73073	1	12023	12023		8.2081	1.9738	1	1619900			45265	3082	33072	33337	44190	44190					0.07535285928611302
RSSKFAGTRFL	11	Unmodified	_RSSKFAGTRFL_					0	0	0		ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	423.906928	1268.69895	-0.56154	-0.00023804	0.0022011	9.3307E-07	-0.55933	-0.00023711	423.90682577870365	33.492	0.30513	34.244	34.043	34.348	0.75225	-0.10825	4.4386E-05	NaN	8.2081	13	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1619900			45266	3082	33072	33337							0.07535285928611302
RSSKQLVDI	9	Unmodified	_RSSKQLVDI_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	A375_MHC_IP_R1	1	523.702880859375	2	523.303655	1044.59276	-1.0478	-0.0005483	0.2247	0.00011759	-0.82306	-0.00043071	523.3035940771431	123.2	2.8266	123.2	121.97	124.8	0					123	55	4	0	0	0	0.68046	2	46518	46137;46518		8.7454	3.8484	1	217080000			45267	3391	33073	33338	44191;44192	44192					0.07224530363282611
RSSKQLVDI	9	Unmodified	_RSSKQLVDI_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	A375_MHC_IP_R2	2	523.703125	2	523.303655	1044.59276	-0.46357	-0.00024259	-0.10116	-5.2938E-05	-0.56473	-0.00029553	523.3034537104251	118.52	2.2827	119.12	118.44	120.73	0.60909					103	44	4	0	0	0	0.73804	1	45071	45071		3.5965	0.60125	1	84574000			45268	3391	33073	33338	44193	44193					0.07224530363282611
RSSKQLVDI	9	Unmodified	_RSSKQLVDI_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	A375_MHC_IP_R2	2	523.70263671875	2	523.303655	1044.59276	-0.54498	-0.00028519	-0.10731	-5.6154E-05	-0.65228	-0.00034134	523.3034170946491	123.08	3.6957	123.46	121.81	125.5	0.3766					181	72	4	0	0	0	0.6656	2	47762	47127;47762		10.074	1.9184	1	222110000			45269	3391	33073	33338	44194;44195	44195					0.07224530363282611
RSSKSVAKLL	10	Unmodified	_RSSKSVAKLL_					0	0	0		nc|ENSG00000145757|Q9BWV2-3|SPATA9;ENSG00000145757|ENST00000274432|SPATA9	nc|ENSG00000145757|Q9BWV2-3|SPATA9	nc|ENSG00000145757|Q9BWV2-3|SPATA9	MSMS	A375_MHC_IP_R1	1	363.5805358886719	3	363.564391	1087.67134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.296	1	20.296	19.796	20.796	0								0	0	0	0.15438	1	5190	5190		6.6235	4.3407	1				45270	5579	33074	33339	44196	44196					0.13101382668378392
RSSKTSDKEIA	11	Unmodified	_RSSKTSDKEIA_					0	0	0		tr|U7T554|U7T554_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00315PE=3SV=1	tr|U7T554|U7T554_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00315PE=3SV=1	tr|U7T554|U7T554_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00315PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	611.7247314453125	2	611.325316	1220.63608	-0.52588	-0.00032148	0.86068	0.00052615	0.3348	0.00020467	611.3262036958336	127.47	1.57	127.74	126.75	128.32	0.26593					42	30	2	0	0	0	0.73189	1	50028	50028		7.1017	7.1017	1	11413000			45271	30011	33075	33340	44197	44197					0.03458675349929763
RSSLGGRDLY	10	Unmodified	_RSSLGGRDLY_					0	0	0		ENSG00000162664|ENST00000340281|ZNF326	ENSG00000162664|ENST00000340281|ZNF326	ENSG00000162664|ENST00000340281|ZNF326	MULTI-SECPEP	A375_MHC_IP_R1	1	375.60015869140625	3	375.2	1122.57817	0.22509	8.4455E-05	-0.059573	-2.2352E-05	0.16552	6.2104E-05	375.1998044074012	28.224	0.50337	28.224	27.937	28.44	0					14	9	3	0	0	0	0.86335	1	8709	8709		19.144	5.5291	1	3859200			45272	6574	33076	33341	44198	44198					0.021784582151667564
RSSLGGRDLY	10	Unmodified	_RSSLGGRDLY_					0	0	0		ENSG00000162664|ENST00000340281|ZNF326	ENSG00000162664|ENST00000340281|ZNF326	ENSG00000162664|ENST00000340281|ZNF326	MULTI-SECPEP	A375_MHC_IP_R2	2	375.9284362792969	3	375.2	1122.57817	0.35473	0.00013309	-0.22852	-8.574E-05	0.12621	4.7354E-05	375.1999017597978	27.547	0.45587	28.225	27.996	28.452	0.67857					12	8	2	0	0	0	0.83175	1	9421	9421		27.129	14.954	1	5730700			45273	6574	33076	33341	44199	44199					0.021784582151667564
RSSLLRKIYRR	11	Unmodified	_RSSLLRKIYRR_					0	0	0		ENST00000400249.6_1_22:32154609-32160987:+|nuORF	ENST00000400249.6_1_22:32154609-32160987:+|nuORF	ENST00000400249.6_1_22:32154609-32160987:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	724.8516845703125	2	724.452051	1446.88955	-0.59741	-0.00043279	0.57043	0.00041325	-0.026974	-1.9541E-05	724.4520385630159	149.01	3.3558	149.03	146.66	150.01	0.018707					554	212	6	0	0	0	1.001	1	57869	57869		1.1933	0.84271	1	10710000			45274	11552	33077	33342	44200	44200					0.18397992310679
RSSMQQGNVDG	11	Unmodified	_RSSMQQGNVDG_					0	0	0		ENSG00000184811|ENST00000333813|TRARG1	ENSG00000184811|ENST00000333813|TRARG1	ENSG00000184811|ENST00000333813|TRARG1	MSMS	A375_MHC_IP_R2	2	589.7423706054688	2	589.764568	1177.51458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.88	1	131.09	130.59	131.59	0.2142								0	0	0	0.16265	1	51486	51486		4.897	0.95262	1				45275	8610	33078	33343	44201	44201					-0.06707270284255173
RSSMSMEETEH	11	Unmodified	_RSSMSMEETEH_					0	0	0		nc|ENSG00000187098|O75030-11|MITF;chr3:69936755-69937822|454|189.49|0.48|8.63|+|ENST00000531774|MITF,MITF;nc|ENSG00000187098|O75030-10|MITF;nc|ENSG00000187098|O75030-9|MITF;nc|ENSG00000187098|O75030-12|MITF;nc|ENSG00000187098|O75030-4|MITF;nc|ENSG00000187098|O75030-3|MITF;nc|ENSG00000187098|O75030-8|MITF;nc|ENSG00000187098|O75030-7|MITF;nc|ENSG00000187098|O75030-6|MITF;nc|ENSG00000187098|O75030-2|MITF;nc|ENSG00000187098|O75030-5|MITF;ENSG00000187098|ENST00000352241|MITF	nc|ENSG00000187098|O75030-11|MITF	nc|ENSG00000187098|O75030-11|MITF	MSMS	A375_MHC_IP_R1	1	662.2273559570312	2	662.268826	1322.5231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.99	1	130.99	130.49	131.49	0								0	0	0	0.16265	1	50492	50492		4.897	1.3005	1				45276	476	33079	33344	44202	44202					-0.12526084429964612
RSSNHTLI	8	Unmodified	_RSSNHTLI_					0	0	0		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;nc|ENSG00000176225|Q86VV8-2|RTTN;ENST00000581583.1_1_18:67834153-67872894:-|nuORF;nc|ENSG00000176225|Q86VV8-4|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-SECPEP	A375_MHC_IP_R2	2	463.6837158203125	2	464.253966	926.493378	-0.5577	-0.00025892	0.77057	0.00035774	0.21287	9.8826E-05	464.25427407483767	132.08	0.35408	132.27	132.1	132.46	0.18953					9	6	2	0	0	0	0.972	1	51964	51964		4.3292	0	1	1954700			45277	8010	33080	33345	44203	44203					0.02719132469201213
RSSNVLTLSL	10	Unmodified	_RSSNVLTLSL_					0	0	0		ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	545.7164306640625	2	545.316763	1088.61897	-1.1084	-0.00060444	0.25234	0.0001376	-0.85608	-0.00046684	545.3167894612769	122.88	3.0808	122.88	121.52	124.6	0					107	60	3	0	0	0	0.71653	1	46251	46251		4.897	1.3005	1	87807000			45278	13012	33081	33346	44204	44204					0.07820799534783873
RSSPARHRPR	10	Unmodified	_RSSPARHRPR_					0	0	0			REV__chr5:132271906-132272025|104|12.39|0.69|4.16|+|2|None,PDLIM4|1	REV__chr5:132271906-132272025|104|12.39|0.69|4.16|+|2|None,PDLIM4|1	MULTI-MSMS	A375_MHC_IP_R2	2	610.7479248046875	2	610.347586	1218.68062	-0.48051	-0.00029328	0.73314	0.00044747	0.25263	0.00015419	610.3478657767532	130.77	0.91672	130.98	130.75	131.67	0.2142					30	17	2	0	0	0	0.72078	1	51643	51643		2.9952	2.9952	1	48477000	+		45279	15757	33082	33347	44205	44205					0.08002588797262433
RSSPIIIQLL	10	Unmodified	_RSSPIIIQLL_					0	0	0		ENST00000558383.1_1_15:45393877-45400429:-|nuORF;nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;DUOX2|p.E657K|3|0.23|ENSG00000140279|chr15:45106304-45106304|C/T|missense_variant	ENST00000558383.1_1_15:45393877-45400429:-|nuORF	ENST00000558383.1_1_15:45393877-45400429:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	570.7297973632812	2	570.360973	1138.70739	-0.6505	-0.00037102	0.049192	2.8057E-05	-0.60131	-0.00034296	570.3607999997523	149.63	2.1584	149.63	147.85	150	0					247	68	5	0	0	0	0.94897	1	57116	57116		0.35063	0	1	3088700			45280	5135	33083	33348	44206	44206					0.1435883984524935
RSSRFGRRR	9	Unmodified	_RSSRFGRRR_					0	0	0			REV__ENST00000473125.5_1_15:34674999-34675119:-|nuORF	REV__ENST00000473125.5_1_15:34674999-34675119:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	589.4055786132812	2	589.342304	1176.67005	-0.54248	-0.00031971	0.69436	0.00040922	0.15188	8.9508E-05	589.3424433179216	130.9	5.1251	130.9	130.67	135.79	0					181	100	3	0	0	0	0.75764	1	51220	51220		1.8442	1.8442	1	105710000	+		45281	25143	33084	33349	44207	44207					0.08878606142843637
RSSRRRRKRVE	11	Unmodified	_RSSRRRRKRVE_					0	0	0			REV__ENSG00000119685|ENST00000298832|TTLL5	REV__ENSG00000119685|ENST00000298832|TTLL5	MULTI-SECPEP	A375_MHC_IP_R1	1	496.3584899902344	3	495.969696	1484.88726	-0.73922	-0.00036663	1.4929	0.00074042	0.75366	0.00037379	495.9706216534093	141.65	0.3035	141.65	141.42	141.73	0					6	5	2	0	0	0	1.0015	1	54386	54386		0.094841	0	1	633900	+		45282	18085	33085	33350	44208	44208					0.16420956625574945
RSSSAYSVQS	10	Unmodified	_RSSSAYSVQS_					0	0	0			REV__CASR|p.P163S|1|0.21|ENSG00000036828|chr3:122257382-122257382|C/T|missense_variant	REV__CASR|p.P163S|1|0.21|ENSG00000036828|chr3:122257382-122257382|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	358.2400817871094	3	357.84036	1070.49925	-0.53564	-0.00019167	-0.053706	-1.9218E-05	-0.58934	-0.00021089	357.84032010509554	20.454	0.61106	21.064	20.701	21.312	0.61029					20	11	2	0	0	0	0.89761	1	6332	6332		10.899	0	1	1676500	+		45283	15581	33086	33351	44209	44209					-0.03317813809803738
RSSSRSRHRH	10	Unmodified	_RSSSRSRHRH_					0	0	0			REV__ENST00000482860.1_1_7:139102272-139107083:+|nuORF	REV__ENST00000482860.1_1_7:139102272-139107083:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	633.7684936523438	2	633.33775	1264.66095	-0.86909	-0.00055043	1.2428	0.00078711	0.37371	0.00023669	633.3385478389433	130.12	0.86302	130.12	129.75	130.62	0					29	16	2	0	0	0	0.72014	1	50253	50253		3.2813	0.54611	1	21067000	+		45284	19560	33087	33352	44210	44210					0.039202127865110015
RSSSRSRHRH	10	Unmodified	_RSSSRSRHRH_					0	0	0			REV__ENST00000482860.1_1_7:139102272-139107083:+|nuORF	REV__ENST00000482860.1_1_7:139102272-139107083:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	633.7683715820312	2	633.33775	1264.66095	-0.86136	-0.00054553	0.81948	0.00051901	-0.041881	-2.6525E-05	633.3382939244333	128.64	1.2192	128.88	128.04	129.26	0.23946					33	23	2	0	0	0	0.72014	1	50536	50536		3.2813	3.2813	1	9343600	+		45285	19560	33087	33352	44211	44211					0.039202127865110015
RSSTTNTP	8	Unmodified	_RSSTTNTP_					0	0	0			REV__nc|ENSG00000163006|Q96M89-2|CCDC138	REV__nc|ENSG00000163006|Q96M89-2|CCDC138	MSMS	A375_MHC_IP_R1	1	432.1536865234375	2	432.214506	862.414459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.36	1	142.36	141.86	142.86	0								0	0	0	0.16876	1	54627	54627		3.9444	0	1		+		45286	20328	33088	33353	44212	44212					-0.022251395557645992
RSSTTNTP	8	Unmodified	_RSSTTNTP_					0	0	0			REV__nc|ENSG00000163006|Q96M89-2|CCDC138	REV__nc|ENSG00000163006|Q96M89-2|CCDC138	MSMS	A375_MHC_IP_R2	2	432.1536865234375	2	432.214506	862.414459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.38	1	142.41	141.91	142.91	0.030731								0	0	0	0.16876	1	55661	55661		7.2892	0	1		+		45287	20328	33088	33353	44213	44213					-0.022251395557645992
RSSTTVKVF	9	Unmodified	_RSSTTVKVF_					0	0	0		ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96	ENSG00000153283|ENST00000352690|CD96	ENSG00000153283|ENST00000352690|CD96	MULTI-SECPEP	A375_MHC_IP_R1	1	512.6643676757812	2	512.792924	1023.57129	-0.62024	-0.00031805	-0.14755	-7.5665E-05	-0.76779	-0.00039372	512.7927918093025	28.864	0.70964	28.864	28.643	29.353	0					37	13	4	0	0	0	0.087712	1	8961	8961		75.761	75.761	1	51722000			45288	6023	33089	33354	44214	44214					0.060451453345763184
RSSTTVKVF	9	Unmodified	_RSSTTVKVF_					0	0	0		ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96	ENSG00000153283|ENST00000352690|CD96	ENSG00000153283|ENST00000352690|CD96	MULTI-SECPEP	A375_MHC_IP_R2	2	513.1924438476562	2	512.792924	1023.57129	-0.94906	-0.00048667	-0.17685	-9.0689E-05	-1.1259	-0.00057736	512.7927862126968	28.099	0.55849	28.778	28.553	29.112	0.67857					32	10	4	0	0	0	0.076731	1	9655	9655		71.708	71.708	1	51978000			45289	6023	33089	33354	44215	44215					0.060451453345763184
RSSTVTLKTW	10	Unmodified	_RSSTVTLKTW_					0	0	0		chr22:22298211-22303224|472|83.81|0.0|23.0|+|0|None,BMS1P20|1;chr2:94203287-94208310|463|17.08|0.0|20.7|-|0|BMS1P23,None|1	chr22:22298211-22303224|472|83.81|0.0|23.0|+|0|None,BMS1P20|1	chr22:22298211-22303224|472|83.81|0.0|23.0|+|0|None,BMS1P20|1	MULTI-MSMS	A375_MHC_IP_R1	1	590.2300415039062	2	589.830037	1177.64552	-0.11428	-6.7403E-05	-0.32012	-0.00018882	-0.4344	-0.00025622	589.8299332931911	37.406	0.35748	37.406	37.198	37.556	0					11	6	2	0	0	0	0.29004	1	12633	12633		46.022	26.765	1	3392300			45290	466	33090	33355	44216	44216					0.06380488426111697
RSSTVTLKTW	10	Unmodified	_RSSTVTLKTW_					0	0	0		chr22:22298211-22303224|472|83.81|0.0|23.0|+|0|None,BMS1P20|1;chr2:94203287-94208310|463|17.08|0.0|20.7|-|0|BMS1P23,None|1	chr22:22298211-22303224|472|83.81|0.0|23.0|+|0|None,BMS1P20|1	chr22:22298211-22303224|472|83.81|0.0|23.0|+|0|None,BMS1P20|1	MULTI-SECPEP	A375_MHC_IP_R2	2	590.2296142578125	2	589.830037	1177.64552	-0.82948	-0.00048925	0.33985	0.00020046	-0.48962	-0.0002888	589.8302236651144	36.457	0.45667	37.228	36.953	37.41	0.7709					18	8	3	0	0	0	0.92295	1	13278	13278		22.658	22.658	1	4815300			45291	466	33090	33355	44217	44217					0.06380488426111697
RSSVFAEDY	9	Unmodified	_RSSVFAEDY_					0	0	0		ENST00000316660.6_1_18:57570124-57570343:+|nuORF	ENST00000316660.6_1_18:57570124-57570343:+|nuORF	ENST00000316660.6_1_18:57570124-57570343:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	537.2268676757812	2	537.248546	1072.48254	-0.68661	-0.00036888	0.56017	0.00030095	-0.12644	-6.7928E-05	537.2486212162257	42.052	0.45551	42.052	41.88	42.336	0					16	8	3	0	0	0	0.51106	1	14494	14494		19.257	11.347	1	2193900			45292	10662	33091	33356	44218	44218					-0.050803146957377976
RSSVILLTY	9	Unmodified	_RSSVILLTY_					0	0	0		ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	MULTI-SECPEP	A375_MHC_IP_R1	1	526.7108764648438	2	526.310949	1050.60735	-0.30392	-0.00015996	-0.98537	-0.00051861	-1.2893	-0.00067857	526.310602098392	78.895	1.064	78.895	78.201	79.265	0					28	20	2	0	0	0	0.47674	1	28768	28768		36.506	11.515	1	12987000			45293	2936	33092	33357	44219	44219					0.08406602511445271
RSSVWSLRAPQ	11	Unmodified	_RSSVWSLRAPQ_					0	0	0			REV__ENST00000497857.5_1_2:218899814-218900102:+|nuORF	REV__ENST00000497857.5_1_2:218899814-218900102:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	429.6329650878906	3	429.570316	1285.68912	-0.14942	-6.4188E-05	1.2952	0.0005564	1.1458	0.00049221	429.57083151972824	42.042	0.50762	42.042	41.828	42.336	0					12	9	2	0	0	0	0.99889	1	14500	14500		1.6479	0	1	1408000	+		45294	25472	33093	33358	44220	44220					0.057700979232322425
RSSWPKRRSWP	11	Unmodified	_RSSWPKRRSWP_					0	0	0		chr6:70168215-70168655|244|11.26|0.64|4.13|+|2|COL19A1,COL19A1|1	chr6:70168215-70168655|244|11.26|0.64|4.13|+|2|COL19A1,COL19A1|1	chr6:70168215-70168655|244|11.26|0.64|4.13|+|2|COL19A1,COL19A1|1	MSMS	A375_MHC_IP_R1	1	721.8208618164062	2	721.891826	1441.7691	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.93	1	131.93	131.43	132.43	0								0	0	0	0.16223	1	50870	50870		7.1017	4.3665	1				45295	498	33094	33359	44221	44221					0.06588584317069035
RSTALQPY	8	Unmodified	_RSTALQPY_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-SECPEP	A375_MHC_IP_R2	2	467.6278381347656	2	468.250892	934.48723	-0.64811	-0.00030348	0.020313	9.5116E-06	-0.6278	-0.00029397	468.25076112546566	31.519	0.40823	32.237	31.974	32.383	0.71857					12	7	2	0	0	0	0.96266	1	11065	11065		16.942	0	1	2290600			45296	6391	33095	33360	44222	44222					0.0173661423766589
RSTDRVLQW	9	Unmodified	_RSTDRVLQW_					0	0	0		ENSG00000165516|ENST00000298307|KLHDC2;nc|ENSG00000165516|Q9Y2U9-2|KLHDC2	ENSG00000165516|ENST00000298307|KLHDC2	ENSG00000165516|ENST00000298307|KLHDC2	MULTI-MSMS	A375_MHC_IP_R1	1	387.94415283203125	3	387.543878	1159.60981	0.79314	0.00030738	-0.68211	-0.00026435	0.11104	4.3032E-05	387.54364266026226	44.938	0.55727	44.938	44.575	45.132	0					29	10	4	0	0	0	0.43945	1	15681	15681		22.775	6.2091	1	9164000			45297	6962	33096	33361	44223	44223					0.03638450969083351
RSTDRVLQW	9	Unmodified	_RSTDRVLQW_					0	0	0		ENSG00000165516|ENST00000298307|KLHDC2;nc|ENSG00000165516|Q9Y2U9-2|KLHDC2	ENSG00000165516|ENST00000298307|KLHDC2	ENSG00000165516|ENST00000298307|KLHDC2	MULTI-MSMS	A375_MHC_IP_R2	2	387.94390869140625	3	387.543878	1159.60981	0.051413	1.9925E-05	-0.087993	-3.4101E-05	-0.03658	-1.4176E-05	387.5438745664319	43.945	0.60502	44.714	44.38	44.985	0.7691					31	11	4	0	0	0	0.33243	1	16379	16379		28.234	6.6435	1	7407600			45298	6962	33096	33361	44224	44224					0.03638450969083351
RSTDSIRLL	9	Unmodified	_RSTDSIRLL_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MULTI-SECPEP	A375_MHC_IP_R1	1	531.2088623046875	2	530.809105	1059.60366	-0.0054971	-2.9179E-06	-0.53904	-0.00028613	-0.54454	-0.00028905	530.8088467165678	44.853	0.70946	44.853	44.575	45.284	0					39	13	4	0	0	0	0.10502	1	15630	15630		68.76	68.76	1	60293000			45299	2996	33097	33362	44225	44225					0.0762393273755606
RSTDSIRLL	9	Unmodified	_RSTDSIRLL_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MULTI-SECPEP	A375_MHC_IP_R2	2	531.2085571289062	2	530.809105	1059.60366	-0.42537	-0.00022579	-0.34211	-0.00018159	-0.76748	-0.00040739	530.8089475055036	43.836	0.80846	44.605	44.329	45.138	0.7691					45	15	4	0	0	0	0.15736	1	16305	16305		64.927	21.068	1	47755000			45300	2996	33097	33362	44226	44226					0.0762393273755606
RSTELDSNW	9	Unmodified	_RSTELDSNW_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3;ENST00000526185.5_1_11:47197353-47198404:-|nuORF;ENST00000524727.5_1_11:47194869-47198404:-|nuORF;ENST00000527097.5_1_11:47193699-47198404:-|nuORF;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-SECPEP	A375_MHC_IP_R2	2	554.6567993164062	2	554.256902	1106.49925	-0.84814	-0.00047009	0.5598	0.00031027	-0.28834	-0.00015981	554.2569306793215	41.674	0.56016	42.449	42.149	42.709	0.77451					27	10	4	0	0	0	0.43207	1	15434	15434		40.239	7.4535	1	5705000			45301	9794	33098	33363	44227	44227					-0.049738138098064155
RSTPYSAYDP	10	Unmodified	_RSTPYSAYDP_					0	0	0		ENST00000463710.1_1_22:20102137-20102676:-|nuORF;ENST00000492988.5_1_22:20102137-20102943:-|nuORF;ENST00000494820.5_1_22:20100432-20103278:-|nuORF;nc|ENSG00000099899|Q8IZ69-2|TRMT2A;ENSG00000099899|ENST00000252136|TRMT2A	ENST00000463710.1_1_22:20102137-20102676:-|nuORF	ENST00000463710.1_1_22:20102137-20102676:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	386.58050537109375	3	386.180494	1155.51965	-0.43427	-0.00016771	0.30959	0.00011956	-0.12468	-4.8149E-05	386.180505591839	23.417	0.50541	24.047	23.828	24.333	0.63014					16	9	3	0	0	0	0.91442	1	7542	7542		2.4348	0	1	9030800			45302	2090	33099	33364	44228	44228					-0.05188643149995187
RSTQYMKEY	9	Unmodified	_RSTQYMKEY_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-SECPEP	A375_MHC_IP_R2	2	604.06982421875	2	603.284605	1204.55466	-0.75629	-0.00045626	-0.25703	-0.00015506	-1.0133	-0.00061132	603.2846965864609	19.562	0.40651	20.172	19.892	20.298	0.61029					10	7	2	0	0	0	0.70421	1	6030	6030		22.658	12.584	1	1046600			45303	8474	33100	33365	44229	44229					-0.0394372361367914
RSTRESMKVP	10	Unmodified	_RSTRESMKVP_					0	0	0		ENST00000393965.7_1_2:74709990-74710182:-|nuORF	ENST00000393965.7_1_2:74709990-74710182:-|nuORF	ENST00000393965.7_1_2:74709990-74710182:-|nuORF	MSMS	A375_MHC_IP_R2	2	397.60211181640625	3	397.548523	1189.62374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.298	1	28.976	28.476	29.476	0.67857								0	0	0	0.15306	1	9754	9754		10.899	0.099449	1				45304	11445	33101	33366	44230	44230					0.03651360405865489
RSTVAEHLW	9	Unmodified	_RSTVAEHLW_					0	0	0		ENSG00000137822|ENST00000564079|TUBGCP4;nc|ENSG00000137822|Q9UGJ1|TUBGCP4	ENSG00000137822|ENST00000564079|TUBGCP4	ENSG00000137822|ENST00000564079|TUBGCP4	MULTI-SECPEP	A375_MHC_IP_R1	1	550.1880493164062	2	549.788173	1097.56179	-0.84205	-0.00046295	0.1364	7.4993E-05	-0.70565	-0.00038796	549.7884067234589	41.302	0.40683	41.302	41.063	41.47	0					13	7	2	0	0	0	0.5212	1	14258	14258		32.786	24.63	1	3486800			45305	4924	33102	33367	44231	44231					0.016913770490191382
RSTVAEHLW	9	Unmodified	_RSTVAEHLW_					0	0	0		ENSG00000137822|ENST00000564079|TUBGCP4;nc|ENSG00000137822|Q9UGJ1|TUBGCP4	ENSG00000137822|ENST00000564079|TUBGCP4	ENSG00000137822|ENST00000564079|TUBGCP4	MULTI-SECPEP	A375_MHC_IP_R2	2	550.1875610351562	2	549.788173	1097.56179	-0.84741	-0.00046589	-0.00098387	-5.4092E-07	-0.84839	-0.00046644	549.7884803844182	40.312	0.50642	41.086	40.879	41.386	0.77451					19	9	3	0	0	0	0.5212	1	14946	14946		26.268	18.979	1	4805200			45306	4924	33102	33367	44232	44232					0.016913770490191382
RSVAQAGVQW	10	Unmodified	_RSVAQAGVQW_					0	0	0		AluSx1_dup103332|chr19:3541347-3541618:-|1.5455059550052153|0.4666171557700829|1.73|472.0|13|1|anti-sense;chr3:42786162-42788622|346|16.97|0.0|20.69|-|2|TE_info:AluSx1,AluSx1_dup18965,Alu,SINE,donor,+,42788622,42788900|HIGD1A,None|1;ENST00000368990.7_2_10:124190627-124190768:+|nuORF;ENST00000449376.5_1_3:48960220-48964907:+|nuORF;AluY_dup64372|chr11:882046-882337:+|1.0905878511053595|0.3489879065155246|1.64|472.0|16|2|anti-sense;AluY_dup35561|chr6:33300685-33300983:+|1.0577996074829454|0.1243112229828391|3.09|472.0|13|1|anti-sense;ENST00000204726.7_3_12:133346563-133346842:-|nuORF;ENST00000564893.1_1_16:27692577-27730085:-|nuORF;ENST00000591384.5_1_17:76624040-76626354:-|nuORF;ENST00000452284.1_1_22:21356738-21362956:+|nuORF;ENST00000467136.5_1_X:30854677-30861194:-|nuORF;ENST00000436079.1_1_22:21356738-21363657:+|nuORF;ENST00000589797.5_1_17:40732947-40733403:-|nuORF;ENST00000429962.1_1_22:21356738-21357321:+|nuORF;nc|nan|Q6UX73|C16orf89;ENSG00000167637|ENST00000618787|ZNF283	AluSx1_dup103332|chr19:3541347-3541618:-|1.5455059550052153|0.4666171557700829|1.73|472.0|13|1|anti-sense	AluSx1_dup103332|chr19:3541347-3541618:-|1.5455059550052153|0.4666171557700829|1.73|472.0|13|1|anti-sense	MULTI-SECPEP	A375_MHC_IP_R1	1	551.6932983398438	2	551.293622	1100.57269	-0.38226	-0.00021074	-0.19559	-0.00010783	-0.57785	-0.00031856	551.2934852907596	45.763	0.7613	45.763	45.484	46.245	0					32	14	3	0	0	0	0.047329	1	16012	16012		92.201	20.493	1	12691000			45307	117	33103	33368	44233	44233					0.02642779423331376
RSVAQAGVQW	10	Unmodified	_RSVAQAGVQW_					0	0	0		AluSx1_dup103332|chr19:3541347-3541618:-|1.5455059550052153|0.4666171557700829|1.73|472.0|13|1|anti-sense;chr3:42786162-42788622|346|16.97|0.0|20.69|-|2|TE_info:AluSx1,AluSx1_dup18965,Alu,SINE,donor,+,42788622,42788900|HIGD1A,None|1;ENST00000368990.7_2_10:124190627-124190768:+|nuORF;ENST00000449376.5_1_3:48960220-48964907:+|nuORF;AluY_dup64372|chr11:882046-882337:+|1.0905878511053595|0.3489879065155246|1.64|472.0|16|2|anti-sense;AluY_dup35561|chr6:33300685-33300983:+|1.0577996074829454|0.1243112229828391|3.09|472.0|13|1|anti-sense;ENST00000204726.7_3_12:133346563-133346842:-|nuORF;ENST00000564893.1_1_16:27692577-27730085:-|nuORF;ENST00000591384.5_1_17:76624040-76626354:-|nuORF;ENST00000452284.1_1_22:21356738-21362956:+|nuORF;ENST00000467136.5_1_X:30854677-30861194:-|nuORF;ENST00000436079.1_1_22:21356738-21363657:+|nuORF;ENST00000589797.5_1_17:40732947-40733403:-|nuORF;ENST00000429962.1_1_22:21356738-21357321:+|nuORF;nc|nan|Q6UX73|C16orf89;ENSG00000167637|ENST00000618787|ZNF283	AluSx1_dup103332|chr19:3541347-3541618:-|1.5455059550052153|0.4666171557700829|1.73|472.0|13|1|anti-sense	AluSx1_dup103332|chr19:3541347-3541618:-|1.5455059550052153|0.4666171557700829|1.73|472.0|13|1|anti-sense	MULTI-SECPEP	A375_MHC_IP_R2	2	551.6932983398438	2	551.293622	1100.57269	-0.90001	-0.00049617	0.1052	5.7997E-05	-0.79481	-0.00043817	551.2936585145629	44.903	0.76423	45.672	45.39	46.154	0.7691					34	14	3	0	0	0	0.13439	1	16737	16737		74.772	19.537	1	17680000			45308	117	33103	33368	44234	44234					0.02642779423331376
RSVCLTVSLP	10	Unmodified	_RSVCLTVSLP_					0	0	0			REV__ENST00000398084.6_1_20:30457368-30457944:-|nuORF	REV__ENST00000398084.6_1_20:30457368-30457944:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	359.2706604003906	3	358.870715	1073.59032	-0.23243	-8.3413E-05	0.13093	4.6987E-05	-0.1015	-3.6426E-05	358.87081423877584	30.895	1.3195	31.613	31.317	32.636	0.71857					31	25	2	0	0	0	0.79457	1	10892	10892		17.863	4.3445	1	3246000	+		45309	24371	33104	33369	44235	44235					0.056463586339759786
RSVDRGAI	8	Unmodified	_RSVDRGAI_					0	0	0			REV__ENST00000480947.1_1_10:104243895-104247966:-|nuORF	REV__ENST00000480947.1_1_10:104243895-104247966:-|nuORF	MSMS	A375_MHC_IP_R1	1	437.1634521484375	2	437.248683	872.482814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.4	1	55.4	54.9	55.9	0								0	0	0	0.16876	1	19812	19812		15.768	1.1865	1		+		45310	17854	33105	33370	44236	44236					0.041471498147643615
RSVDVTNTTF	10	Unmodified	_RSVDVTNTTF_					0	0	0		ENST00000597026.5_1_19:19017767-19023834:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;ENSG00000105669|ENST00000262812|COPE	ENST00000597026.5_1_19:19017767-19023834:-|nuORF	ENST00000597026.5_1_19:19017767-19023834:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	570.687744140625	2	570.288202	1138.56185	-0.30684	-0.00017499	0.3152	0.00017975	0.0083627	4.7691E-06	570.2883731276871	43.842	0.66252	43.842	43.502	44.165	0					31	12	3	0	0	0	0.24526	1	15210	15210		59.052	22.546	1	25354000			45311	2627	33106	33371	44237	44237					-0.0018866774162233924
RSVDVTNTTF	10	Unmodified	_RSVDVTNTTF_					0	0	0		ENST00000597026.5_1_19:19017767-19023834:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;ENSG00000105669|ENST00000262812|COPE	ENST00000597026.5_1_19:19017767-19023834:-|nuORF	ENST00000597026.5_1_19:19017767-19023834:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	570.68798828125	2	570.288202	1138.56185	-0.20975	-0.00011962	-0.28687	-0.0001636	-0.49662	-0.00028322	570.2880833718294	43.036	1.1117	43.809	43.523	44.634	0.7724					68	21	5	0	0	0	0.084058	1	15991	15991		67.081	15.451	1	30841000			45312	2627	33106	33371	44238	44238					-0.0018866774162233924
RSVEGLSRRL	10	Unmodified	_RSVEGLSRRL_					0	0	0		nc|ENSG00000087494|P12272-2|PTHLH;ENSG00000087494|ENST00000545234|PTHLH;nc|ENSG00000087494|P12272-3|PTHLH	nc|ENSG00000087494|P12272-2|PTHLH	nc|ENSG00000087494|P12272-2|PTHLH	MULTI-MSMS	A375_MHC_IP_R2	2	391.9667663574219	3	391.566794	1171.67855	-0.51917	-0.00020329	0.32229	0.0001262	-0.19688	-7.7093E-05	391.5669289601734	23.105	0.71372	23.735	23.265	23.979	0.63014					22	13	2	0	0	0	0.63381	1	7356	7356		18.34	5.4838	1	13694000			45313	1875	33107	33372	44239	44239					0.09958115268818801
RSVGRISKQW	10	Unmodified	_RSVGRISKQW_					0	0	0		ENST00000571541.5_1_17:7293706-7296729:-|nuORF;ENSG00000187838|ENST00000619711|PLSCR3	ENST00000571541.5_1_17:7293706-7296729:-|nuORF	ENST00000571541.5_1_17:7293706-7296729:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	406.9690856933594	3	406.235156	1215.68364	-0.30066	-0.00012214	0.08996	3.6545E-05	-0.2107	-8.5593E-05	406.2350409840944	20.03	0.60743	20.64	20.248	20.855	0.61029					27	11	4	0	0	0	0.91773	1	6188	6188		9.7643	9.7643	1	2615400			45314	8863	33108	33373	44240	44240					0.0844241913141559
RSVKKKKKNIQ	11	Unmodified	_RSVKKKKKNIQ_					0	0	0		ENSG00000123219|ENST00000396679|CENPK	ENSG00000123219|ENST00000396679|CENPK	ENSG00000123219|ENST00000396679|CENPK	MSMS	A375_MHC_IP_R1	1	678.9117431640625	2	678.943528	1355.8725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.388	1	77.388	76.888	77.888	0								0	0	0	0.16249	1	28231	28231		5.7319	2.7366	1				45315	3836	33109	33374	44241	44241					0.2088007170491437
RSVKWIHMFEL	11	Unmodified	_RSVKWIHMFEL_					0	0	0			REV__ENSG00000139144|ENST00000538779|PIK3C2G	REV__ENSG00000139144|ENST00000538779|PIK3C2G	MULTI-SECPEP	A375_MHC_IP_R1	1	362.8500061035156	4	362.198508	1444.76493	0.45463	0.00016467	1.8087	0.00065512	2.2634	0.00081979	362.4499392732759	21.718	0.30497	21.718	21.555	21.86	0					8	5	2	0	0	0	0.99681	1	5787	5787		2.4348	0.8425	1	2003900	+		45316	19135	33110	33375	44242	44242					0.06033358779131959
RSVLEQTKL	9	Unmodified	_RSVLEQTKL_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MSMS	A375_MHC_IP_R2	2	358.60137939453125	3	358.548629	1072.62406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.73	1	43.502	43.002	44.002	0.7724								0	0	0	0.15486	1	15904	15904		10.8	0	1				45317	7525	33111	33376	44243	44243					0.09065103397369967
RSVLHHFHF	9	Unmodified	_RSVLHHFHF_					0	0	0		ENSG00000241945|ENST00000291576|PWP2	ENSG00000241945|ENST00000291576|PWP2	ENSG00000241945|ENST00000291576|PWP2	MULTI-SECPEP	A375_MHC_IP_R2	2	394.27703857421875	3	393.877192	1178.60975	-0.2237	-8.8109E-05	-0.083796	-3.3005E-05	-0.30749	-0.00012111	393.8771143103966	32.655	0.4068	33.392	33.162	33.569	0.73692					16	7	3	0	0	0	0.65498	1	11685	11685		20.871	20.871	1	2564000			45318	9789	33112	33377	44244	44244					0.027584957597355242
RSVPVVMQW	9	Oxidation (M)	_RSVPVVM(Oxidation (M))QW_		RSVPVVM(1)QW		RSVPVVM(77)QW	0	0	1		ENST00000499346.6_1_5:127418462-127418714:-|nuORF	ENST00000499346.6_1_5:127418462-127418714:-|nuORF	ENST00000499346.6_1_5:127418462-127418714:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	559.695068359375	2	559.294776	1116.575	-0.40065	-0.00022408	-0.15376	-8.5998E-05	-0.55441	-0.00031008	559.2948200734737	56.11	0.75871	56.11	55.79	56.548	0					35	14	4	0	0	0	0.027818	1	20061	20061		76.825	52.804	1	9486800			45319	12771	33113	33378	44245	44245		461			0.021374918367882856
RSVPVVMQW	9	Oxidation (M)	_RSVPVVM(Oxidation (M))QW_		RSVPVVM(1)QW		RSVPVVM(68)QW	0	0	1		ENST00000499346.6_1_5:127418462-127418714:-|nuORF	ENST00000499346.6_1_5:127418462-127418714:-|nuORF	ENST00000499346.6_1_5:127418462-127418714:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	559.69384765625	2	559.294776	1116.575	-0.78356	-0.00043824	0.24332	0.00013609	-0.54025	-0.00030216	559.2949484740486	55.391	0.86322	56.142	55.779	56.642	0.75075					36	16	3	0	0	0	0.04093	1	20868	20868		67.838	49.692	1	8476500			45320	12771	33113	33378	44246	44246		461			0.021374918367882856
RSVPVVMQW	9	Unmodified	_RSVPVVMQW_					0	0	0		ENST00000499346.6_1_5:127418462-127418714:-|nuORF	ENST00000499346.6_1_5:127418462-127418714:-|nuORF	ENST00000499346.6_1_5:127418462-127418714:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	551.7179565429688	2	551.297319	1100.58008	-0.69677	-0.00038413	-0.0026999	-1.4885E-06	-0.69947	-0.00038562	551.297381895743	80.466	1.4199	80.466	80.136	81.556	0					39	27	3	0	0	0	0.31062	1	29452	29452		29.841	10.402	1	18982000			45321	12771	33113	33379	44247	44247					0.033817956993971166
RSVPVVMQW	9	Unmodified	_RSVPVVMQW_					0	0	0		ENST00000499346.6_1_5:127418462-127418714:-|nuORF	ENST00000499346.6_1_5:127418462-127418714:-|nuORF	ENST00000499346.6_1_5:127418462-127418714:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	551.6973266601562	2	551.297319	1100.58008	-0.69401	-0.00038261	-0.52906	-0.00029167	-1.2231	-0.00067427	551.2971264333904	79.618	0.71182	80.363	79.997	80.708	0.74474					46	13	4	0	0	0	0.21241	3	30164	30164;30188;30290		37.075	17.818	1	13958000			45322	12771	33113	33379	44248;44249;44250	44248					0.033817956993971166
RSVRLTPFK	9	Unmodified	_RSVRLTPFK_					0	0	0			REV__ENST00000262265.9_1_19:49954772-49954904:-|nuORF	REV__ENST00000262265.9_1_19:49954772-49954904:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	368.9124450683594	3	368.560981	1102.66111	0.30576	0.00011269	-1.1456	-0.00042221	-0.8398	-0.00030952	368.89500364589634	20.104	0.507	20.104	19.877	20.384	0					15	9	2	0	0	0	0.75274	1	5185	5185		2.2828	0	1	1764200	+		45323	23201	33114	33380	44251	44251					0.11388819733792843
RSVSDNDIRKY	11	Unmodified	_RSVSDNDIRKY_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-SECPEP	A375_MHC_IP_R1	1	451.9684753417969	3	451.568752	1351.68443	-0.33663	-0.00015201	-0.057791	-2.6097E-05	-0.39442	-0.00017811	451.56873011624407	19.394	0.38484	19.394	19.238	19.623	0					18	7	4	0	0	0	0.002857	1	4811	4811		151.85	134.28	1	35223000			45324	6934	33115	33381	44252	44252					0.022651689897884353
RSVSDNDIRKY	11	Unmodified	_RSVSDNDIRKY_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-SECPEP	A375_MHC_IP_R2	2	450.94683837890625	3	451.568752	1351.68443	-0.53408	-0.00024118	-0.6538	-0.00029524	-1.1879	-0.00053641	451.56826504171505	18.89	0.16035	19.493	19.423	19.583	0.60308					9	4	3	0	0	0	0.98276	1	5682	5682		20.411	14.219	1	45846000			45325	6934	33115	33381	44253	44253					0.022651689897884353
RSWDHNEFF	9	Unmodified	_RSWDHNEFF_					0	0	0		ENSG00000165097|ENST00000650836|KDM1B;nc|ENSG00000165097|Q8NB78-2|KDM1B	ENSG00000165097|ENST00000650836|KDM1B	ENSG00000165097|ENST00000650836|KDM1B	MULTI-MSMS	A375_MHC_IP_R1	1	619.6721801757812	2	619.272887	1236.53122	-0.36549	-0.00022634	-0.36414	-0.0002255	-0.72963	-0.00045184	619.2726736584357	59.614	0.50803	59.614	59.397	59.905	0					20	9	3	0	0	0	0.21241	1	21443	21443		37.075	7.9931	1	3775800			45326	6911	33116	33382	44254	44254					-0.07758401336036513
RSWDHNEFF	9	Unmodified	_RSWDHNEFF_					0	0	0		ENSG00000165097|ENST00000650836|KDM1B;nc|ENSG00000165097|Q8NB78-2|KDM1B	ENSG00000165097|ENST00000650836|KDM1B	ENSG00000165097|ENST00000650836|KDM1B	MULTI-MSMS	A375_MHC_IP_R2	2	619.6719360351562	2	619.272887	1236.53122	-1.0516	-0.00065125	0.067903	4.205E-05	-0.98374	-0.0006092	619.2728957755905	58.775	0.50763	59.522	59.286	59.793	0.74714					21	9	3	0	0	0	0.26169	1	22233	22233		33.445	5.8161	1	3134100			45327	6911	33116	33382	44255	44255					-0.07758401336036513
RSWDHNEFF	9	Unmodified	_RSWDHNEFF_					0	0	0		ENSG00000165097|ENST00000650836|KDM1B;nc|ENSG00000165097|Q8NB78-2|KDM1B	ENSG00000165097|ENST00000650836|KDM1B	ENSG00000165097|ENST00000650836|KDM1B	MULTI-MSMS	A375_MHC_IP_R2	2	413.58416748046875	3	413.18435	1236.53122	-0.34377	-0.00014204	-0.31139	-0.00012866	-0.65516	-0.0002707	413.1842018111049	58.783	0.40583	59.531	59.286	59.691	0.74714					20	7	4	0	0	0	0.17338	1	22239	22239		30.703	19.186	1	2308400			45328	6911	33116	33382	44256	44256					-0.07758401336036513
RSWDHNEFF	9	Unmodified	_RSWDHNEFF_					0	0	0		ENSG00000165097|ENST00000650836|KDM1B;nc|ENSG00000165097|Q8NB78-2|KDM1B	ENSG00000165097|ENST00000650836|KDM1B	ENSG00000165097|ENST00000650836|KDM1B	MULTI-MATCH	A375_MHC_IP_R1	1		3	413.18435	1236.53122	0.28177	0.00011642	-0.61844	-0.00025553	-0.33668	-0.00013911	413.51836198410996	59.646	0.50742	59.646	59.295	59.803	0	0.057941	-0.00020393	NaN	30.703	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2094700			45329	6911	33116	33382							-0.07758401336036513
RSWIVNKHRM	10	Unmodified	_RSWIVNKHRM_					0	0	0		ENST00000565919.1_1_16:28962342-28963698:+|nuORF;ENST00000565752.5_1_16:28962332-28963698:+|nuORF	ENST00000565919.1_1_16:28962342-28963698:+|nuORF	ENST00000565919.1_1_16:28962342-28963698:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	443.3327331542969	3	442.911907	1325.71389	-0.31068	-0.0001376	1.0972	0.00048598	0.78656	0.00034838	442.9123437236399	131.23	0.4028	131.23	131.07	131.48	0					12	7	2	0	0	0	0.94941	1	50663	50663		1.5923	1.0863	1	1967800			45330	13551	33117	33383	44257	44257					0.0640645452492663
RSWKAQLSSL	10	Unmodified	_RSWKAQLSSL_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-SECPEP	A375_MHC_IP_R2	2	393.2899475097656	3	392.555895	1174.64586	-0.44062	-0.00017297	0.43028	0.00016891	-0.010339	-4.0588E-06	392.89060880266874	51.616	0.61103	52.368	52.169	52.78	0.75225					20	11	3	0	0	0	0.92055	1	19449	19449		16.275	5.3756	1	2933600			45331	2486	33118	33384	44258	44258					0.06551908145956986
RSWLSYSY	8	Unmodified	_RSWLSYSY_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	A375_MHC_IP_R1	1	531.174560546875	2	531.256174	1060.49779	-0.60264	-0.00032016	-0.15072	-8.007E-05	-0.75336	-0.00040023	531.2560877559804	73.969	0.5573	73.969	73.69	74.247	0					17	10	3	0	0	0	0.71817	1	26913	26913		29.082	3.6823	1	2029000			45332	8958	33119	33385	44259	44259					-0.030034031079139822
RSWLSYSY	8	Unmodified	_RSWLSYSY_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	A375_MHC_IP_R2	2	531.6553955078125	2	531.256174	1060.49779	-0.59846	-0.00031793	-0.50751	-0.00026962	-1.106	-0.00058755	531.2557550479899	73.266	0.458	74.001	73.734	74.192	0.7354					14	8	2	0	0	0	0.71116	1	27814	27814		31.268	4.3847	1	1898500			45333	8958	33119	33385	44260	44260					-0.030034031079139822
RSYGDMHSF	9	Oxidation (M)	_RSYGDM(Oxidation (M))HSF_		RSYGDM(1)HSF		RSYGDM(42)HSF	0	0	1		ENSG00000071575|ENST00000155926|TRIB2	ENSG00000071575|ENST00000155926|TRIB2	ENSG00000071575|ENST00000155926|TRIB2	MULTI-SECPEP	A375_MHC_IP_R1	1	558.63232421875	2	558.232373	1114.45019	-0.15899	-8.8754E-05	-0.10017	-5.5918E-05	-0.25916	-0.00014467	558.2323296709199	22.62	0.655	22.62	22.419	23.074	0					26	12	3	0	0	0	0.40377	1	6091	6091		41.956	29.424	1	3819000			45334	1515	33120	33386	44261	44261		45			-0.10245425370408157
RSYGDMHSF	9	Unmodified	_RSYGDMHSF_					0	0	0		ENSG00000071575|ENST00000155926|TRIB2	ENSG00000071575|ENST00000155926|TRIB2	ENSG00000071575|ENST00000155926|TRIB2	MULTI-MSMS	A375_MHC_IP_R2	2	550.6339721679688	2	550.234916	1098.45528	-1.6535	-0.00090981	0.71624	0.0003941	-0.93725	-0.00051571	550.7369828403815	29.109	0.35024	29.807	29.681	30.032	0.69872					10	6	2	0	0	0	0.4875	1	10157	10157		20.415	4.5674	1	3499900			45335	1515	33120	33387	44262	44262					-0.09001121507776588
RSYGTPEL	8	Unmodified	_RSYGTPEL_					0	0	0		nc|ENSG00000086065|Q9NZZ3-2|CHMP5;ENSG00000086065|ENST00000223500|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	MULTI-SECPEP	A375_MHC_IP_R2	2	462.1347351074219	2	461.735074	921.455596	-0.73336	-0.00033862	0.26117	0.00012059	-0.4722	-0.00021803	461.73518257692433	36.461	0.76507	37.232	36.85	37.615	0.7709					32	14	3	0	0	0	0.68831	1	13251	13251		41.84	0	1	12672000			45336	1829	33121	33388	44263	44263					-0.00827378516294175
RSYPQLRRV	9	Unmodified	_RSYPQLRRV_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	A375_MHC_IP_R1	1	392.6314697265625	3	392.231634	1173.67307	0.44352	0.00017396	-0.35938	-0.00014096	0.084138	3.3002E-05	392.23153728122537	21.99	0.76239	21.99	21.606	22.368	0					55	14	5	0	0	0	0.030222	1	5815	5815		74.772	45.491	1	181940000			45337	4636	33122	33389	44264	44264					0.09318436476974057
RSYPQLRRV	9	Unmodified	_RSYPQLRRV_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	A375_MHC_IP_R1	1	391.9599609375	3	392.231634	1173.67307	0.27183	0.00010662	-0.031134	-1.2212E-05	0.2407	9.4409E-05	392.2316618365101	23.03	0.85893	23.03	22.368	23.227	0					32	16	2	0	0	0	0.038567	2	6280	6144;6280		68.76	39.479	1	312350000			45338	4636	33122	33389	44265;44266	44266					0.09318436476974057
RSYPQLRRV	9	Unmodified	_RSYPQLRRV_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	A375_MHC_IP_R1	1	392.63177490234375	3	392.231634	1173.67307	-0.09608	-3.7686E-05	0.28402	0.0001114	0.18794	7.3716E-05	392.23172644828037	23.406	0.76406	23.406	23.227	23.991	0					22	14	2	0	0	0	0.0091377	1	6397	6397		101.54	56.599	1	115020000			45339	4636	33122	33389	44267	44267					0.09318436476974057
RSYPQLRRV	9	Unmodified	_RSYPQLRRV_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	A375_MHC_IP_R2	2	392.6315612792969	3	392.231634	1173.67307	-0.51258	-0.00020105	-0.078685	-3.0863E-05	-0.59126	-0.00023191	392.23166751996104	20.27	1.6722	20.88	20.298	21.97	0.61029					110	32	6	0	0	0	0.22164	2	6396	6162;6396		36.395	20.12	1	311630000			45340	4636	33122	33389	44268;44269	44269					0.09318436476974057
RSYPQLRRV	9	Unmodified	_RSYPQLRRV_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	A375_MHC_IP_R2	2	392.6314697265625	3	392.231634	1173.67307	-0.53665	-0.00021049	0.39934	0.00015664	-0.1373	-5.3854E-05	392.23176829997493	22.866	0.8145	23.496	23.215	24.029	0.63014					39	15	4	0	0	0	0.0091377	2	7289	7270;7289		101.54	66.464	1	76177000			45341	4636	33122	33389	44270;44271	44271					0.09318436476974057
RSYRRYKRQH	10	Unmodified	_RSYRRYKRQH_					0	0	0			REV__nc|ENSG00000117616|Q9BUV0-3|RSRP1	REV__nc|ENSG00000117616|Q9BUV0-3|RSRP1	MSMS	A375_MHC_IP_R2	2	725.5460815429688	2	725.40035	1448.78615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.02	1	109.76	109.26	110.26	0.74684								0	0	0	0.15596	1	41150	41150		1.4819	0.15237	1		+		45342	18017	33123	33390	44272	44272					0.0797050492285507
RSYSESEKQW	10	Unmodified	_RSYSESEKQW_					0	0	0		nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL;ENSG00000237190|ENST00000458198|CDKN2AIPNL	nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL	nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL	MULTI-SECPEP	A375_MHC_IP_R1	1	434.2698669433594	3	433.87032	1298.58913	0.065594	2.8459E-05	-0.13053	-5.6634E-05	-0.064937	-2.8174E-05	433.87015893884444	21.377	0.50744	21.377	21.098	21.606	0					18	9	3	0	0	0	0.1946	1	5609	5609		78.116	60.544	1	3906500			45343	9756	33124	33391	44273	44273					-0.048221842012253546
RSYSESEKQW	10	Unmodified	_RSYSESEKQW_					0	0	0		nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL;ENSG00000237190|ENST00000458198|CDKN2AIPNL	nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL	nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL	MULTI-MSMS	A375_MHC_IP_R2	2	650.701171875	2	650.301841	1298.58913	-1.0371	-0.00067442	-0.042274	-2.7491E-05	-1.0794	-0.00070191	650.3017509990867	19.864	0.35269	20.474	20.248	20.6	0.61029					12	6	2	0	0	0	0.35113	1	6113	6113		37.075	8.5801	1	3661300			45344	9756	33124	33391	44274	44274					-0.048221842012253546
RSYSESEKQW	10	Unmodified	_RSYSESEKQW_					0	0	0		nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL;ENSG00000237190|ENST00000458198|CDKN2AIPNL	nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL	nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL	MULTI-SECPEP	A375_MHC_IP_R2	2	434.2701416015625	3	433.87032	1298.58913	-0.56455	-0.00024494	-0.086924	-3.7714E-05	-0.65147	-0.00028266	433.87031306803186	19.876	0.5049	20.486	20.146	20.651	0.61029					18	9	3	0	0	0	0.17241	1	6108	6108		74.094	54.107	1	3914700			45345	9756	33124	33391	44275	44275					-0.048221842012253546
RSYTLIRKL	9	Unmodified	_RSYTLIRKL_					0	0	0		ENSG00000176871|ENST00000315436|WSB2;nc|ENSG00000176871|Q9NYS7-2|WSB2;nc|ENSG00000176871|Q9NYS7-3|WSB2	ENSG00000176871|ENST00000315436|WSB2	ENSG00000176871|ENST00000315436|WSB2	MULTI-MSMS	A375_MHC_IP_R1	1	384.28662109375	3	383.908269	1148.70298	0.36639	0.00014066	0.11881	4.5612E-05	0.4852	0.00018627	383.90822904361977	33.673	0.30039	33.673	33.547	33.848	0					9	5	2	0	0	0	0.62707	1	11012	11012		13.519	3.2034	1	2116300			45346	8035	33125	33392	44276	44276					0.13457375422331097
RSYTLIRKL	9	Unmodified	_RSYTLIRKL_					0	0	0		ENSG00000176871|ENST00000315436|WSB2;nc|ENSG00000176871|Q9NYS7-2|WSB2;nc|ENSG00000176871|Q9NYS7-3|WSB2	ENSG00000176871|ENST00000315436|WSB2	ENSG00000176871|ENST00000315436|WSB2	MSMS	A375_MHC_IP_R2	2	383.9668884277344	3	383.908269	1148.70298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.613	1	33.35	32.85	33.85	0.73692								0	0	0	0.14731	1	11623	11623		25.997	4.4072	1				45347	8035	33125	33392	44277	44277					0.13457375422331097
RSYVTTSTRTY	11	Unmodified	_RSYVTTSTRTY_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R1	1	446.3053894042969	3	445.561486	1333.66263	-0.34777	-0.00015495	-0.1255	-5.5917E-05	-0.47327	-0.00021087	445.5613475647167	23.505	0.76406	23.505	23.227	23.991	0					35	14	5	0	0	0	0.028118	3	6459	6459;6504;6638		83.455	67.916	1	86372000			45348	1093	33126	33393	44278;44279;44280	44278					0.009143642412027475
RSYVTTSTRTY	11	Unmodified	_RSYVTTSTRTY_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	A375_MHC_IP_R1	1	668.2380981445312	2	667.838591	1333.66263	-0.87976	-0.00058753	0.27413	0.00018307	-0.60563	-0.00040446	667.8387733012712	23.504	0.61029	23.504	23.33	23.94	0					20	11	4	0	0	0	0.788	1	6468	6468		32.518	28.329	1	43606000			45349	1093	33126	33393	44281	44281					0.009143642412027475
RSYVTTSTRTY	11	Unmodified	_RSYVTTSTRTY_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R2	2	446.30450439453125	3	445.561486	1333.66263	-0.71215	-0.00031731	0.030699	1.3678E-05	-0.68145	-0.00030363	445.56139044051815	21.345	0.81097	21.964	21.525	22.336	0.61932					48	15	4	0	0	0	0.16804	2	6726	6643;6726		58.398	47.871	1	38833000			45350	1093	33126	33393	44282;44283	44283					0.009143642412027475
RSYVTTSTRTY	11	Unmodified	_RSYVTTSTRTY_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R2	2	445.9610900878906	3	445.561486	1333.66263	-0.68615	-0.00030572	-0.0087185	-3.8846E-06	-0.69487	-0.00030961	445.5614092778732	23.374	0.60727	24.005	23.726	24.333	0.63014					13	11	2	0	0	0	0.64117	2	7509	7509;7537		20.12	9.0546	1	17678000			45351	1093	33126	33393	44284;44285	44284					0.009143642412027475
RSYVTTSTRTY	11	Unmodified	_RSYVTTSTRTY_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	A375_MHC_IP_R2	2	668.2377319335938	2	667.838591	1333.66263	-1.13	-0.00075469	-0.16569	-0.00011065	-1.2957	-0.00086534	667.8383990373942	21.367	0.60961	21.986	21.676	22.285	0.61932					31	11	4	0	0	0	0.788	1	6676	6676		38.161	32.429	1	18159000			45352	1093	33126	33393	44286	44286					0.009143642412027475
RSYVTTSTRTY	11	Unmodified	_RSYVTTSTRTY_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	A375_MHC_IP_R2	2	668.2379760742188	2	667.838591	1333.66263	-1.1037	-0.00073706	0.40116	0.00026791	-0.7025	-0.00046916	667.8387209319147	23.367	0.20086	23.997	23.878	24.079	0.63014					7	3	3	0	0	0	0.9907	1	7515	7515		9.2438	8.0504	1	8874600			45353	1093	33126	33393	44287	44287					0.009143642412027475
RTAAGMEGLSW	11	Unmodified	_RTAAGMEGLSW_					0	0	0		ENST00000378119.8_1_6:24720562-24720727:-|nuORF	ENST00000378119.8_1_6:24720562-24720727:-|nuORF	ENST00000378119.8_1_6:24720562-24720727:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	590.1848754882812	2	589.784773	1177.55499	-0.069474	-4.0975E-05	-0.29549	-0.00017428	-0.36497	-0.00021525	589.7847264324272	70.146	0.50835	70.146	69.832	70.341	0					24	9	3	0	0	0	0.30351	1	25445	25445		46.475	8.2997	1	5399100			45354	11307	33127	33394	44288	44288					-0.026683038938244863
RTAGPRSSSPW	11	Unmodified	_RTAGPRSSSPW_					0	0	0		ENST00000409304.5_1_2:224866376-224866451:-|nuORF	ENST00000409304.5_1_2:224866376-224866451:-|nuORF	ENST00000409304.5_1_2:224866376-224866451:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	401.9419860839844	3	401.207266	1200.59997	-0.57891	-0.00023226	1.6676	0.00066904	1.0887	0.00043678	401.20786266847296	23.786	0.81365	23.786	23.533	24.347	0					37	15	3	0	0	0	0.61555	2	6609	6609;6773		22.109	9.6511	1	22819000			45355	11630	33128	33395	44289;44290	44289					0.0076926296369492775
RTAGPRSSSPW	11	Unmodified	_RTAGPRSSSPW_					0	0	0		ENST00000409304.5_1_2:224866376-224866451:-|nuORF	ENST00000409304.5_1_2:224866376-224866451:-|nuORF	ENST00000409304.5_1_2:224866376-224866451:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	401.60699462890625	3	401.207266	1200.59997	-0.36637	-0.00014699	0.11672	4.6828E-05	-0.24966	-0.00010016	401.207368554602	23.012	0.66287	23.642	23.265	23.928	0.63015					25	12	3	0	0	0	0.39454	1	7348	7348		39.413	19.787	1	13173000			45356	11630	33128	33395	44291	44291					0.0076926296369492775
RTAHVILRY	9	Unmodified	_RTAHVILRY_					0	0	0		ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	MULTI-MSMS	A375_MHC_IP_R1	1	377.2926330566406	3	376.89273	1127.65636	0.26387	9.945E-05	-0.20001	-7.5382E-05	0.063859	2.4068E-05	376.8926556122736	27.436	0.55598	27.436	27.179	27.735	0					31	10	4	0	0	0	0.029287	1	8290	8290		62.78	47.532	1	20040000			45357	6374	33129	33396	44292	44292					0.09763935591035988
RTAHVILRY	9	Unmodified	_RTAHVILRY_					0	0	0		ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	MULTI-MSMS	A375_MHC_IP_R2	2	377.2926025390625	3	376.89273	1127.65636	-0.13832	-5.2131E-05	-0.27488	-0.0001036	-0.4132	-0.00015573	376.8926128761528	26.678	0.66363	27.338	27.008	27.671	0.65992					39	12	4	0	0	0	0.074562	2	8977	8967;8977		44.945	28.379	1	19893000			45358	6374	33129	33396	44293;44294	44294					0.09763935591035988
RTAIIVGGKW	10	Unmodified	_RTAIIVGGKW_					0	0	0		ENST00000391835.1_1_19:50380055-50380151:-|nuORF	ENST00000391835.1_1_19:50380055-50380151:-|nuORF	ENST00000391835.1_1_19:50380055-50380151:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	551.232177734375	2	550.832383	1099.65021	-0.30198	-0.00016634	-0.65585	-0.00036126	-0.95783	-0.0005276	550.8321513387444	49.752	0.50863	49.752	49.49	49.998	0					13	9	2	0	0	0	0.85074	1	17622	17622		23.801	11.56	1	2180900			45359	11410	33130	33397	44295	44295					0.10437417359503343
RTAIIVGGKW	10	Unmodified	_RTAIIVGGKW_					0	0	0		ENST00000391835.1_1_19:50380055-50380151:-|nuORF	ENST00000391835.1_1_19:50380055-50380151:-|nuORF	ENST00000391835.1_1_19:50380055-50380151:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	551.23193359375	2	550.832383	1099.65021	-0.87608	-0.00048257	0.36006	0.00019833	-0.51602	-0.00028424	550.8323521015408	48.778	0.35784	49.535	49.332	49.69	0.75737					11	6	2	0	0	0	0.85074	1	18348	18348		23.801	11.56	1	2028800			45360	11410	33130	33397	44296	44296					0.10437417359503343
RTAKALQAHW	10	Unmodified	_RTAKALQAHW_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1;nc|ENSG00000187778|Q96EZ8-4|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	MULTI-MSMS	A375_MHC_IP_R1	1	394.6363525390625	3	394.556118	1180.64652	-0.21392	-8.4405E-05	0.15417	6.0828E-05	-0.059757	-2.3577E-05	394.55618608863017	24.114	0.25395	24.114	23.991	24.245	0					8	4	3	0	0	0	0.15548	1	6779	6779		53.798	33.811	1	4812300			45361	8856	33131	33398	44297	44297					0.06342747585654251
RTAKALQAHW	10	Unmodified	_RTAKALQAHW_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1;nc|ENSG00000187778|Q96EZ8-4|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	MULTI-SECPEP	A375_MHC_IP_R2	2	394.6360168457031	3	394.556118	1180.64652	-0.47496	-0.0001874	-0.43609	-0.00017206	-0.91104	-0.00035946	394.5561332149147	23.273	0.25347	23.903	23.726	23.979	0.63014					7	4	2	0	0	0	0.84881	1	7446	7446		24.957	17.855	1	3277300			45362	8856	33131	33398	44298	44298					0.06342747585654251
RTALIFGGF	9	Unmodified	_RTALIFGGF_					0	0	0		ENSG00000250317|ENST00000506197|SMIM20;nc|ENSG00000250317|Q8N5G0-2|SMIM20	ENSG00000250317|ENST00000506197|SMIM20	ENSG00000250317|ENST00000506197|SMIM20	MULTI-MSMS	A375_MHC_IP_R1	1	491.6787414550781	2	491.279452	980.544351	-0.26733	-0.00013133	-0.17388	-8.5423E-05	-0.44121	-0.00021676	491.27933955137223	102.37	0.75763	102.37	102.05	102.81	0					31	14	4	0	0	0	0.31062	1	37592	37592		29.841	10.402	1	7027700			45363	9845	33132	33399	44299	44299					0.05330081514057383
RTALIFGGF	9	Unmodified	_RTALIFGGF_					0	0	0		ENSG00000250317|ENST00000506197|SMIM20;nc|ENSG00000250317|Q8N5G0-2|SMIM20	ENSG00000250317|ENST00000506197|SMIM20	ENSG00000250317|ENST00000506197|SMIM20	MULTI-SECPEP	A375_MHC_IP_R2	2	491.67919921875	2	491.279452	980.544351	-0.42689	-0.00020972	-0.47664	-0.00023416	-0.90353	-0.00044388	491.2792100202761	101.27	0.91817	102.03	101.65	102.57	0.76428					36	17	3	0	0	0	0.37663	1	38378	38378		36.506	16.092	1	8541600			45364	9845	33132	33399	44300	44300					0.05330081514057383
RTALPRIF	8	Unmodified	_RTALPRIF_					0	0	0		ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1	ENSG00000168394|ENST00000354258|TAP1	ENSG00000168394|ENST00000354258|TAP1	MULTI-MSMS	A375_MHC_IP_R1	1	487.7005310058594	2	487.300719	972.586885	-0.26795	-0.00013057	-0.048272	-2.3523E-05	-0.31622	-0.0001541	487.300603077048	60.505	0.71198	60.505	60.109	60.821	0					30	13	3	0	0	0	0.68964	1	21743	21743		37.974	14.826	1	8691200			45365	7295	33133	33400	44301	44301					0.09949476642270838
RTALPRIF	8	Unmodified	_RTALPRIF_					0	0	0		ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1	ENSG00000168394|ENST00000354258|TAP1	ENSG00000168394|ENST00000354258|TAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	487.69989013671875	2	487.300719	972.586885	-0.98607	-0.00048051	0.055908	2.7244E-05	-0.93016	-0.00045327	487.30068580376104	59.436	0.7595	60.183	59.793	60.553	0.74714					31	14	3	0	0	0	0.76996	1	22448	22448		43.858	7.8141	1	7907800			45366	7295	33133	33400	44302	44302					0.09949476642270838
RTALRGYRAF	10	Unmodified	_RTALRGYRAF_					0	0	0		ENST00000553961.1_1_14:69446487-69454135:+|nuORF	ENST00000553961.1_1_14:69446487-69454135:+|nuORF	ENST00000553961.1_1_14:69446487-69454135:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	404.63134765625	3	404.231634	1209.67307	-0.4076	-0.00016477	-0.010013	-4.0475E-06	-0.41762	-0.00016881	404.23161882160224	28.577	0.55693	28.577	28.188	28.745	0					27	10	3	0	0	0	0.72061	1	8753	8753		3.0723	0.22898	1	5354400			45367	13410	33134	33401	44303	44303					0.0766243647697138
RTALRGYRAF	10	Unmodified	_RTALRGYRAF_					0	0	0		ENST00000553961.1_1_14:69446487-69454135:+|nuORF	ENST00000553961.1_1_14:69446487-69454135:+|nuORF	ENST00000553961.1_1_14:69446487-69454135:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	404.231634	1209.67307	-0.4076	-0.00016477	-0.010013	-4.0475E-06	-0.41762	-0.00016881	404.23161882160224	28.577	0.55693	28.577	28.188	28.745	0	0.18265	0.00010054	NaN	3.0723	27	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5354400			45368	13410	33134	33401							0.0766243647697138
RTAQEVETY	9	Unmodified	_RTAQEVETY_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.Y425Lfs*24|1|0.13|ENSG00000108654|chr17:64500716-64500717|-/A|frameshift_variant;ENST00000581230.5_1_17:62498125-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-SECPEP	A375_MHC_IP_R1	1	549.1664428710938	2	548.767103	1095.51965	-0.78567	-0.00043115	0.066043	3.6242E-05	-0.71963	-0.00039491	548.767055952739	23.92	0.65979	23.92	23.787	24.447	0					21	12	4	0	0	0	0.27742	1	6693	6693		51.63	15.503	1	17334000			45369	2826	33135	33402	44304	44304					-0.02428643149983145
RTAQEVETY	9	Unmodified	_RTAQEVETY_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.Y425Lfs*24|1|0.13|ENSG00000108654|chr17:64500716-64500717|-/A|frameshift_variant;ENST00000581230.5_1_17:62498125-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	A375_MHC_IP_R2	2	549.16650390625	2	548.767103	1095.51965	-1.1001	-0.00060372	0.06179	3.3908E-05	-1.0383	-0.00056981	548.7671073909163	23.276	0.30373	23.906	23.726	24.029	0.63014					13	5	3	0	0	0	0.032333	1	7485	7485		72.968	14.289	1	11157000			45370	2826	33135	33402	44305	44305					-0.02428643149983145
RTATFQQRF	9	Unmodified	_RTATFQQRF_					0	0	0		nc|ENSG00000100227|Q9BY77-2|POLDIP3;ENSG00000100227|ENST00000252115|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	MULTI-MSMS	A375_MHC_IP_R1	1	385.94036865234375	3	385.540357	1153.59924	0.086447	3.3329E-05	-0.029601	-1.1412E-05	0.056846	2.1916E-05	385.5403409888334	28.129	0.55351	28.129	27.887	28.44	0					27	10	4	0	0	0	0.095445	1	8609	8609		51.488	37.083	1	22713000			45371	2139	33136	33403	44306	44306					0.0285846831463914
RTATFQQRF	9	Unmodified	_RTATFQQRF_					0	0	0		nc|ENSG00000100227|Q9BY77-2|POLDIP3;ENSG00000100227|ENST00000252115|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	MULTI-SECPEP	A375_MHC_IP_R1	1	578.206787109375	2	577.806897	1153.59924	-0.35486	-0.00020504	0.086872	5.0195E-05	-0.26799	-0.00015485	577.8069634136182	28.112	0.45196	28.112	27.887	28.339	0					22	8	4	0	0	0	0.67471	1	8615	8615		22.658	15.369	1	18347000			45372	2139	33136	33403	44307	44307					0.0285846831463914
RTATFQQRF	9	Unmodified	_RTATFQQRF_					0	0	0		nc|ENSG00000100227|Q9BY77-2|POLDIP3;ENSG00000100227|ENST00000252115|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	MULTI-SECPEP	A375_MHC_IP_R2	2	385.9404296875	3	385.540357	1153.59924	-0.045568	-1.7568E-05	-0.039111	-1.5079E-05	-0.084679	-3.2647E-05	385.54028889586	27.394	0.50923	28.073	27.792	28.301	0.67857					26	9	4	0	0	0	0.042716	1	9336	9336		79.427	54.436	1	27657000			45373	2139	33136	33403	44308	44308					0.0285846831463914
RTATFQQRF	9	Unmodified	_RTATFQQRF_					0	0	0		nc|ENSG00000100227|Q9BY77-2|POLDIP3;ENSG00000100227|ENST00000252115|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	MULTI-SECPEP	A375_MHC_IP_R2	2	578.2067260742188	2	577.806897	1153.59924	-0.1129	-6.5234E-05	-0.56488	-0.00032639	-0.67778	-0.00039163	577.806603805018	27.394	0.40657	28.073	27.895	28.301	0.67857					20	7	4	0	0	0	0.30925	1	9341	9341		49.554	21.067	1	20096000			45374	2139	33136	33403	44309	44309					0.0285846831463914
RTCFPPPTCT	10	Unmodified	_RTCFPPPTCT_					0	0	0			REV__ENST00000342665.4_2_20:307553-308057:+|nuORF	REV__ENST00000342665.4_2_20:307553-308057:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	562.1561279296875	2	561.757169	1121.49979	-0.62956	-0.00035366	-0.74441	-0.00041818	-1.374	-0.00077183	561.7568267475174	25.719	0.65855	25.719	25.46	26.118	0					30	12	4	0	0	0	0.83355	1	7545	7545		17.113	0.1706	1	16221000	+		45375	23740	33137	33404	44310	44310					-0.05610433685978933
RTCNVSSHGI	10	Unmodified	_RTCNVSSHGI_					0	0	0		ENSG00000154342|ENST00000284523|WNT3A;nc|ENSG00000154342|P56704-2|WNT3A	ENSG00000154342|ENST00000284523|WNT3A	ENSG00000154342|ENST00000284523|WNT3A	MULTI-MSMS	A375_MHC_IP_R2	2	537.2265014648438	2	537.261465	1072.50838	-1.129	-0.00060659	0.70928	0.00038107	-0.41975	-0.00022552	537.2608664186625	41.014	0.407	41.788	41.59	41.997	0.77451					14	7	3	0	0	0	0.6806	1	15168	15168		14.838	3.198	1	1176900			45376	6082	33138	33405	44311	44311					-0.024977437251209267
RTCVSLGKRW	10	Unmodified	_RTCVSLGKRW_					0	0	0			REV__nc|ENSG00000120907|P35348-7|ADRA1A	REV__nc|ENSG00000120907|P35348-7|ADRA1A	MULTI-SECPEP	A375_MHC_IP_R2	2	402.96282958984375	3	402.557242	1204.6499	-0.27881	-0.00011224	-0.099351	-3.9994E-05	-0.37816	-0.00015223	402.5574562900524	23.606	0.20353	24.236	24.079	24.283	0.63014					5	3	2	0	0	0	0.93005	1	7560	7560		6.6235	0	1	659340	+		45377	27199	33139	33406	44312	44312					0.05575674368014916
RTDAILLGHY	10	Unmodified	_RTDAILLGHY_					0	0	0		nc|ENSG00000112146|Q9UK97-3|FBXO9;ENSG00000112146|ENST00000323557|FBXO9;nc|ENSG00000112146|Q9UK97|FBXO9;ENST00000474457.1_1_6:52958219-52962625:+|nuORF	nc|ENSG00000112146|Q9UK97-3|FBXO9	nc|ENSG00000112146|Q9UK97-3|FBXO9	MULTI-SECPEP	A375_MHC_IP_R1	1	580.2166748046875	2	579.81693	1157.61931	-0.28654	-0.00016614	-0.029167	-1.6912E-05	-0.31571	-0.00018305	579.8170052437642	52.559	0.70953	52.559	52.237	52.946	0					30	13	3	0	0	0	0.2613	1	18684	18684		76.825	54.089	1	19063000			45378	3054	33140	33407	44313	44313					0.046802192546238075
RTDAILLGHY	10	Unmodified	_RTDAILLGHY_					0	0	0		nc|ENSG00000112146|Q9UK97-3|FBXO9;ENSG00000112146|ENST00000323557|FBXO9;nc|ENSG00000112146|Q9UK97|FBXO9;ENST00000474457.1_1_6:52958219-52962625:+|nuORF	nc|ENSG00000112146|Q9UK97-3|FBXO9	nc|ENSG00000112146|Q9UK97-3|FBXO9	MULTI-MATCH	A375_MHC_IP_R2	2		2	579.81693	1157.61931	-0.54136	-0.00031389	-0.2075	-0.00012031	-0.74885	-0.0004342	579.8168770672826	51.74	0.61103	52.492	52.169	52.78	0.75225	-0.033744	-0.00011248	NaN	76.825	32	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18239000			45379	3054	33140	33407							0.046802192546238075
RTDAYVKSY	9	Unmodified	_RTDAYVKSY_					0	0	0		nc|ENSG00000147041|Q8TDW5-2|SYTL5;ENSG00000147041|ENST00000297875|SYTL5	nc|ENSG00000147041|Q8TDW5-2|SYTL5	nc|ENSG00000147041|Q8TDW5-2|SYTL5	MULTI-SECPEP	A375_MHC_IP_R1	1	552.1798706054688	2	551.780013	1101.54547	-0.40531	-0.00022364	0.066753	3.6833E-05	-0.33856	-0.00018681	551.7799690283667	20.707	0.61195	20.707	20.334	20.946	0					20	11	3	0	0	0	0.41731	1	5350	5350		42.312	20.776	1	2382300			45380	5650	33141	33408	44314	44314					-0.0012374890770843194
RTDAYVKSY	9	Unmodified	_RTDAYVKSY_					0	0	0		nc|ENSG00000147041|Q8TDW5-2|SYTL5;ENSG00000147041|ENST00000297875|SYTL5	nc|ENSG00000147041|Q8TDW5-2|SYTL5	nc|ENSG00000147041|Q8TDW5-2|SYTL5	MULTI-SECPEP	A375_MHC_IP_R2	2	552.179443359375	2	551.780013	1101.54547	-1.0628	-0.00058645	0.55578	0.00030667	-0.50705	-0.00027978	551.780107857243	19.307	0.3545	19.91	19.733	20.088	0.60308					11	6	2	0	0	0	0.63749	1	5953	5953		26.021	12.115	1	2094400			45381	5650	33141	33408	44315	44315					-0.0012374890770843194
RTDDITSGY	9	Unmodified	_RTDDITSGY_					0	0	0		nc|ENSG00000166833|Q8IVL1-4|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	MSMS	A375_MHC_IP_R2	2	514.1874389648438	2	514.238178	1026.4618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.166	1	29.865	29.365	30.365	0.69872								0	0	0	0.11268	1	10162	10162		38.176	7.539	1				45382	7116	33142	33409	44316	44316					-0.050369050754397904
RTDGKVFQF	9	Unmodified	_RTDGKVFQF_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-SECPEP	A375_MHC_IP_R1	1	366.92938232421875	3	366.529458	1096.56654	0.089189	3.269E-05	0.25305	9.2752E-05	0.34224	0.00012544	366.52954648810265	46.876	1.0217	46.876	46.495	47.517	0					55	19	5	0	0	0	0.47206	1	16443	16443		27.088	4.4303	1	42852000			45383	3217	33143	33410	44317	44317					0.022122611917893664
RTDGKVFQF	9	Unmodified	_RTDGKVFQF_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-SECPEP	A375_MHC_IP_R1	1	549.1380615234375	2	549.290548	1096.56654	-0.69426	-0.00038135	0.21928	0.00012045	-0.47499	-0.00026091	549.2906518445445	46.899	1.5257	46.899	46.545	48.071	0					82	29	5	0	0	0	0.1732	1	16510	16510		70.929	27.07	1	135630000			45384	3217	33143	33410	44318	44318					0.022122611917893664
RTDGKVFQF	9	Unmodified	_RTDGKVFQF_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-SECPEP	A375_MHC_IP_R2	2	366.92950439453125	3	366.529458	1096.56654	0.15923	5.8361E-05	0.060361	2.2124E-05	0.21959	8.0486E-05	366.5294525278506	46.014	0.96001	46.779	46.353	47.313	0.76519					52	18	5	0	0	0	0.34544	1	17141	17141		42.835	27.587	1	59447000			45385	3217	33143	33410	44319	44319					0.022122611917893664
RTDGKVFQF	9	Unmodified	_RTDGKVFQF_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-SECPEP	A375_MHC_IP_R2	2	549.6900024414062	2	549.290548	1096.56654	-0.73579	-0.00040416	0.15101	8.2946E-05	-0.58478	-0.00032122	549.2906190724641	46.013	1.3675	46.778	46.403	47.77	0.76518					76	26	5	0	0	0	0.15393	1	17123	17123		71.708	44.824	1	154140000			45386	3217	33143	33410	44320	44320					0.022122611917893664
RTDIARTEY	9	Unmodified	_RTDIARTEY_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	A375_MHC_IP_R1	1	563.5203247070312	2	562.78837	1123.56219	-0.17853	-0.00010048	-0.59506	-0.00033489	-0.77359	-0.00043537	562.7881603124325	21.544	0.35489	21.544	21.352	21.706	0					14	6	3	0	0	0	0.68641	1	5686	5686		19.626	19.626	1	4932000			45387	9114	33144	33411	44321	44321					0.005347519782390009
RTDIARTEY	9	Unmodified	_RTDIARTEY_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R2	2	563.1876831054688	2	562.78837	1123.56219	-0.87292	-0.00049127	-0.30006	-0.00016887	-1.173	-0.00066014	562.7881973790888	20.11	0.7106	20.72	20.449	21.16	0.61029					24	13	2	0	0	0	0.65637	1	6219	6219		10.8	2.0541	1	1721300			45388	9114	33144	33411	44322	44322					0.005347519782390009
RTDIHYPLT	9	Unmodified	_RTDIHYPLT_					0	0	0		ENSG00000170236|ENST00000532404|USP50;nc|ENSG00000170236|Q70EL3|USP50	ENSG00000170236|ENST00000532404|USP50	ENSG00000170236|ENST00000532404|USP50	MULTI-MSMS	A375_MHC_IP_R2	2	372.6014709472656	3	372.532979	1114.57711	0.39224	0.00014612	-0.2629	-9.794E-05	0.12934	4.8182E-05	372.5328893406465	40.261	0.45641	41.036	40.828	41.285	0.77451					13	8	2	0	0	0	0.73804	1	14978	14978		2.086	0.63089	1	1967200			45389	7483	33145	33412	44323	44323					0.02440243846217527
RTDIPFKDL	9	Unmodified	_RTDIPFKDL_					0	0	0		tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1	tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1	tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	368.2767333984375	3	368.873113	1103.59751	-0.068147	-2.5138E-05	-0.092758	-3.4216E-05	-0.16091	-5.9354E-05	368.8730608075533	61.652	0.6559	62.397	62.07	62.726	0.74503					25	12	3	0	0	0	0.76106	1	23489	23489		9.544	5.0151	1	1234000			45390	29769	33146	33413	44324	44324					0.04985414506040797
RTDPEPPAY	9	Unmodified	_RTDPEPPAY_					0	0	0		ENSG00000267221|ENST00000587304|C17orf113	ENSG00000267221|ENST00000587304|C17orf113	ENSG00000267221|ENST00000587304|C17orf113	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1312255859375	2	523.251089	1044.48762	-0.79229	-0.00041457	-0.99514	-0.00052071	-1.7874	-0.00093528	523.7517767403173	28.155	0.65982	28.834	28.452	29.112	0.67857					18	12	2	0	0	0	0.67539	1	9682	9682		21.537	11.463	1	1610100			45391	9965	33147	33414	44325	44325					-0.032840108331583906
RTDPLENNY	9	Unmodified	_RTDPLENNY_					0	0	0		nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	MULTI-MSMS	A375_MHC_IP_R2	2	561.6644897460938	2	561.264727	1120.5149	-0.89785	-0.00050393	0.070765	3.9718E-05	-0.82708	-0.00046421	561.2647404226128	33.317	0.35587	34.069	33.891	34.247	0.75225					15	6	3	0	0	0	0.04093	2	11942	11849;11942		67.838	24.066	1	3432200			45392	5109	33148	33415	44326;44327	44327					-0.040535272927627375
RTDPLENNY	9	Unmodified	_RTDPLENNY_					0	0	0		nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	MULTI-MATCH	A375_MHC_IP_R1	1		2	561.264727	1120.5149	-0.45676	-0.00025636	-0.35149	-0.00019728	-0.80824	-0.00045364	561.2646517739396	33.976	0.3547	33.976	33.748	34.103	0	-0.046458	-0.00029736	NaN	67.838	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2756300			45393	5109	33148	33415							-0.040535272927627375
RTDPQGFFFY	10	Unmodified	_RTDPQGFFFY_					0	0	0		nc|ENSG00000182621|Q9NQ66-2|PLCB1;ENSG00000182621|ENST00000338037|PLCB1	nc|ENSG00000182621|Q9NQ66-2|PLCB1	nc|ENSG00000182621|Q9NQ66-2|PLCB1	MULTI-MSMS	A375_MHC_IP_R2	2	639.096435546875	2	639.301113	1276.58767	-0.54525	-0.00034858	-1.0002	-0.00063942	-1.5454	-0.000988	639.3003295645594	100.28	0.81689	101.05	100.68	101.49	0.76278					30	15	4	0	0	0	0.40573	1	37993	37993		32.037	10.291	1	2294600			45394	8424	33149	33416	44328	44328					-0.03955773499319548
RTDPVVADY	9	Unmodified	_RTDPVVADY_					0	0	0		ENSG00000132170|ENST00000651735|PPARG;nc|ENSG00000132170|P37231-2|PPARG;nc|ENSG00000132170|P37231|PPARG;nc|ENSG00000132170|P37231-3|PPARG;ENST00000477039.5_1_3:12393091-12447643:+|nuORF	ENSG00000132170|ENST00000651735|PPARG	ENSG00000132170|ENST00000651735|PPARG	MULTI-SECPEP	A375_MHC_IP_R1	1	518.6586303710938	2	518.258914	1034.50327	-0.40878	-0.00021185	-0.1147	-5.9444E-05	-0.52348	-0.0002713	518.2588726879671	37.276	0.86563	37.276	36.895	37.761	0					67	16	6	0	0	0	0.048303	1	12492	12492		93.166	49.308	1	223470000			45395	4378	33150	33417	44329	44329					-0.01259724316082611
RTDPVVADY	9	Unmodified	_RTDPVVADY_					0	0	0		ENSG00000132170|ENST00000651735|PPARG;nc|ENSG00000132170|P37231-2|PPARG;nc|ENSG00000132170|P37231|PPARG;nc|ENSG00000132170|P37231-3|PPARG;ENST00000477039.5_1_3:12393091-12447643:+|nuORF	ENSG00000132170|ENST00000651735|PPARG	ENSG00000132170|ENST00000651735|PPARG	MULTI-SECPEP	A375_MHC_IP_R2	2	518.9708862304688	2	518.258914	1034.50327	-1.0128	-0.00052489	0.16025	8.3053E-05	-0.85255	-0.00044184	518.2590098607616	36.463	1.424	37.234	36.799	38.223	0.7709					82	27	7	0	0	0	0.028087	1	13305	13305		106.94	57.007	1	295550000			45396	4378	33150	33417	44330	44330					-0.01259724316082611
RTDRVGPV	8	Unmodified	_RTDRVGPV_					0	0	0		ENST00000542374.5_1_12:133304012-133311999:-|nuORF	ENST00000542374.5_1_12:133304012-133311999:-|nuORF	ENST00000542374.5_1_12:133304012-133311999:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	450.65625	2	450.256508	898.498464	-0.085175	-3.8351E-05	-0.054395	-2.4492E-05	-0.13957	-6.2842E-05	450.25638744913783	114.28	3.1006	114.99	113.51	116.61	0.70985					89	60	2	0	0	0	0.77686	1	42692	42692		6.3541	0.59368	1	4317600			45397	13296	33151	33418	44331	44331					0.04515436331814726
RTDSFPPPAF	10	Unmodified	_RTDSFPPPAF_					0	0	0			REV__ENST00000308893.8_1_16:29985383-29985953:+|nuORF	REV__ENST00000308893.8_1_16:29985383-29985953:+|nuORF	MSMS	A375_MHC_IP_R1	1	568.1656494140625	2	567.782556	1133.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.912	1	34.912	34.412	35.412	0								0	0	0	0.15207	1	11559	11559		13.906	1.6654	1		+		45398	23486	33152	33419	44332	44332					-0.01087445045095592
RTDSLLFL	8	Unmodified	_RTDSLLFL_					0	0	0		ENST00000392133.7_1_2:217070291-217070480:+|nuORF	ENST00000392133.7_1_2:217070291-217070480:+|nuORF	ENST00000392133.7_1_2:217070291-217070480:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	483.1768493652344	2	482.776742	963.538931	-0.092101	-4.4464E-05	-0.1892	-9.1339E-05	-0.2813	-0.0001358	482.7766030597336	107.81	0.61082	107.81	107.49	108.1	0					20	11	2	0	0	0	0.64713	1	39547	39547		52.268	8.4101	1	2276900			45399	11415	33153	33420	44333	44333					0.05570357931560466
RTDVAVLRY	9	Unmodified	_RTDVAVLRY_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	MULTI-SECPEP	A375_MHC_IP_R1	1	547.2111206054688	2	546.811648	1091.60874	-0.40544	-0.0002217	0.084966	4.6461E-05	-0.32047	-0.00017524	546.8116125453907	40.552	0.55838	40.552	40.304	40.863	0					26	10	4	0	0	0	0.44554	1	13939	13939		40.725	20.271	1	13021000			45400	7019	33154	33421	44334	44334					0.06660236600191638
RTDVAVLRY	9	Unmodified	_RTDVAVLRY_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	MULTI-SECPEP	A375_MHC_IP_R2	2	547.2113037109375	2	546.811648	1091.60874	-0.82778	-0.00045264	0.2313	0.00012648	-0.59648	-0.00032616	546.8116767061317	39.709	0.45737	40.483	40.269	40.727	0.77451					22	8	3	0	0	0	0.53783	1	14663	14663		34.222	12.685	1	13660000			45401	7019	33154	33421	44335	44335					0.06660236600191638
RTDVHIRVF	9	Unmodified	_RTDVHIRVF_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-MSMS	A375_MHC_IP_R1	1	381.9525451660156	3	381.552485	1141.63563	0.36102	0.00013775	-0.079259	-3.0241E-05	0.28176	0.00010751	381.5524231128158	40.323	1.0678	40.323	39.845	40.913	0					48	20	4	0	0	0	0.025728	1	13812	13812		78.61	29.083	1	25227000			45402	2529	33155	33422	44336	44336					0.07047345211367428
RTDVHIRVF	9	Unmodified	_RTDVHIRVF_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-SECPEP	A375_MHC_IP_R2	2	381.9524230957031	3	381.552485	1141.63563	-0.13889	-5.2994E-05	0.019145	7.3048E-06	-0.11974	-4.5689E-05	381.5524737027885	39.414	1.5779	40.188	39.098	40.676	0.77451					49	30	3	0	0	0	0.055122	1	14504	14504		74.772	29.032	1	21535000			45403	2529	33155	33422	44337	44337					0.07047345211367428
RTDYGQVFTY	10	Unmodified	_RTDYGQVFTY_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-2|MYO10;MYO10|p.R1166Vfs*19|1|0.35|ENSG00000145555|chr5:16699511-16699511|C/-|frameshift_variant	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	A375_MHC_IP_R1	1	625.6961669921875	2	625.296027	1248.5775	-0.68683	-0.00042947	0.62425	0.00039034	-0.062577	-3.9129E-05	625.2964388960513	65.845	0.50618	65.845	65.616	66.122	0					16	9	2	0	0	0	0.35113	1	23868	23868		37.075	10.807	1	2983400			45404	5564	33156	33423	44338	44338					-0.03684381224547906
RTDYGQVFTY	10	Unmodified	_RTDYGQVFTY_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-2|MYO10;MYO10|p.R1166Vfs*19|1|0.35|ENSG00000145555|chr5:16699511-16699511|C/-|frameshift_variant	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MATCH	A375_MHC_IP_R2	2		2	625.296027	1248.5775	-0.85575	-0.0005351	-0.1865	-0.00011662	-1.0423	-0.00065172	625.2959150961401	65.141	0.45651	65.879	65.613	66.069	0.73811	0.016804	-0.00063822	NaN	37.075	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1648800			45405	5564	33156	33423							-0.03684381224547906
RTEEALQLY	9	Unmodified	_RTEEALQLY_					0	0	0		ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-MSMS	A375_MHC_IP_R1	1	562.2062377929688	2	561.793121	1121.57169	-0.35719	-0.00020066	0.085317	4.793E-05	-0.27187	-0.00015273	561.7931257767807	56.114	0.86043	56.114	55.79	56.65	0					50	16	4	0	0	0	0.058226	2	20040	20040;20055		75.761	20.987	1	34102000			45406	7900	33157	33424	44339;44340	44339					0.0157652026375672
RTEEALQLY	9	Unmodified	_RTEEALQLY_					0	0	0		ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-MSMS	A375_MHC_IP_R2	2	562.1925659179688	2	561.793121	1121.57169	-0.68742	-0.00038619	0.083224	4.6754E-05	-0.6042	-0.00033944	561.7931173344163	55.258	0.96514	56.009	55.729	56.694	0.75075					54	18	4	0	0	0	0.085252	1	20834	20834		66.457	16.524	1	34483000			45407	7900	33157	33424	44341	44341					0.0157652026375672
RTEEGPTLSY	10	Unmodified	_RTEEGPTLSY_					0	0	0		ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MULTI-SECPEP	A375_MHC_IP_R1	1	577.1806030273438	2	576.78021	1151.54587	-0.097205	-5.6066E-05	-0.020723	-1.1952E-05	-0.11793	-6.8018E-05	576.780175209038	39.314	0.6093	39.314	39.085	39.694	0					33	11	4	0	0	0	0.028865	1	13393	13393		103.82	45.145	1	37601000			45408	1035	33158	33425	44342	44342					-0.023843739784979334
RTEEGPTLSY	10	Unmodified	_RTEEGPTLSY_					0	0	0		ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MULTI-SECPEP	A375_MHC_IP_R2	2	577.1795654296875	2	576.78021	1151.54587	-0.52155	-0.00030082	-0.14513	-8.371E-05	-0.66668	-0.00038453	576.7800636567387	38.601	0.55956	39.376	39.098	39.658	0.77451					31	10	4	0	0	0	0.2729	1	14179	14179		63.227	31.959	1	37095000			45409	1035	33158	33425	44343	44343					-0.023843739784979334
RTEIKLFTRPR	11	Unmodified	_RTEIKLFTRPR_					0	0	0		tr|U7T133|U7T133_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00786PE=4SV=1	tr|U7T133|U7T133_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00786PE=4SV=1	tr|U7T133|U7T133_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00786PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	472.6828918457031	3	472.952649	1415.83612	-0.71187	-0.00033668	-0.97571	-0.00046146	-1.6876	-0.00079814	472.952240267357	134.25	0.25243	134.25	134.12	134.37	0					6	4	2	0	0	0	1.0014	1	51777	51777		0.50596	0	1	3343300			45410	29900	33159	33426	44344	44344					0.14483194808167354
RTEIRVADI	9	Unmodified	_RTEIRVADI_					0	0	0		SON-ITSN1|1|fusion;SON-ITSN1|3|fusion;ENSG00000205726|ENST00000381318|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-4|ITSN1	SON-ITSN1|1|fusion	SON-ITSN1|1|fusion	MULTI-SECPEP	A375_MHC_IP_R1	1	358.6170654296875	3	358.208495	1071.60366	0.041056	1.4706E-05	3.5239	0.0012623	3.565	0.001277	358.2100583103797	24.928	0.35513	24.928	24.698	25.053	0					9	6	2	0	0	0	0.5212	1	7158	7158		10.899	0	1	3956200			45411	29217	33160	33427	44345	44345					0.07071932737562747
RTEKKRRH	8	Unmodified	_RTEKKRRH_					0	0	0			REV__ENST00000599659.5_1_19:41725288-41749617:+|nuORF	REV__ENST00000599659.5_1_19:41725288-41749617:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	371.5892028808594	3	370.891612	1109.65301	0.45344	0.00016818	1.8224	0.00067592	2.2759	0.0008441	370.8925311536982	42.977	0.5066	43.749	43.319	43.826	0.7724					12	9	2	0	0	0	0.972	1	15914	15914		0.35063	0	1	955350	+		45412	20775	33161	33428	44346	44346					0.10256685537024168
RTEPFQDGY	9	Unmodified	_RTEPFQDGY_					0	0	0		ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	MULTI-MSMS	A375_MHC_IP_R1	1	556.6846923828125	2	556.753995	1111.49344	-0.87662	-0.00048806	0.50193	0.00027945	-0.37469	-0.00020861	556.7542110330791	38.135	0.61246	38.135	37.862	38.475	0					36	11	4	0	0	0	0.2415	1	12979	12979		34.932	19.085	1	42952000			45413	6849	33162	33429	44347	44347					-0.05784912321473712
RTEPFQDGY	9	Unmodified	_RTEPFQDGY_					0	0	0		ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	MULTI-MSMS	A375_MHC_IP_R2	2	556.6848754882812	2	556.753995	1111.49344	-1.1936	-0.00066455	0.42039	0.00023405	-0.77323	-0.0004305	556.7541909661733	37.369	0.76573	38.14	37.867	38.632	0.7709					36	14	4	0	0	0	0.14659	1	13744	13744		42.312	26.465	1	46366000			45414	6849	33162	33429	44348	44348					-0.05784912321473712
RTEPINTTY	9	Unmodified	_RTEPINTTY_					0	0	0		ENSG00000163257|ENST00000382247|DCAF16;DCAF16|p.S200Y|1|0.23|ENSG00000163257|chr4:17803543-17803543|G/T|missense_variant	ENSG00000163257|ENST00000382247|DCAF16	ENSG00000163257|ENST00000382247|DCAF16	MULTI-MSMS	A375_MHC_IP_R1	1	548.1770629882812	2	547.77747	1093.54039	-0.87016	-0.00047666	-0.10885	-5.9623E-05	-0.97901	-0.00053628	547.7775107744543	30.434	0.50399	30.434	30.099	30.603	0					21	9	3	0	0	0	0.12748	1	9653	9653		45.74	11.338	1	7896600			45415	6641	33163	33430	44349	44349					-0.0026405277033063612
RTEPINTTY	9	Unmodified	_RTEPINTTY_					0	0	0		ENSG00000163257|ENST00000382247|DCAF16;DCAF16|p.S200Y|1|0.23|ENSG00000163257|chr4:17803543-17803543|G/T|missense_variant	ENSG00000163257|ENST00000382247|DCAF16	ENSG00000163257|ENST00000382247|DCAF16	MULTI-MSMS	A375_MHC_IP_R2	2	548.1767578125	2	547.77747	1093.54039	-1.2736	-0.00069763	0.20718	0.00011349	-1.0664	-0.00058414	547.7775430065973	29.741	0.75777	30.44	30.032	30.79	0.69872					21	14	2	0	0	0	0.20295	1	10389	10389		37.771	6.503	1	8434000			45416	6641	33163	33430	44350	44350					-0.0026405277033063612
RTERFEATV	9	Unmodified	_RTERFEATV_					0	0	0			REV__nc|ENSG00000100433|P57789|KCNK10	REV__nc|ENSG00000100433|P57789|KCNK10	MULTI-SECPEP	A375_MHC_IP_R2	2	370.917236328125	3	370.196367	1107.56727	0.1374	5.0866E-05	0.008798	3.257E-06	0.1462	5.4123E-05	370.1964141257597	30.052	0.50621	30.766	30.603	31.109	0.7134					15	9	2	0	0	0	0.80332	1	10554	10554		2.4985	2.4985	1	2774400	+		45417	17092	33164	33431	44351	44351					0.01779055840847832
RTEYKVRF	8	Unmodified	_RTEYKVRF_					0	0	0			REV__ENST00000520711.1_1_8:41368829-41369321:+|nuORF	REV__ENST00000520711.1_1_8:41368829-41369321:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	367.2735595703125	3	366.873336	1097.59818	0.14546	5.3366E-05	0.09281	3.4049E-05	0.23827	8.7415E-05	366.8733803226863	47.106	0.46433	47.106	46.85	47.315	0					12	8	2	0	0	0	0.972	1	16583	16583		5.7319	0	1	1695800	+		45418	25705	33165	33432	44352	44352					0.053282539457541134
RTFDAGEFTGW	11	Unmodified	_RTFDAGEFTGW_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	MULTI-SECPEP	A375_MHC_IP_R1	1	644.1937866210938	2	643.793652	1285.57275	-0.51372	-0.00033073	-0.19074	-0.00012279	-0.70446	-0.00045353	643.7936690209172	89.695	0.50458	89.695	89.426	89.931	0					22	9	3	0	0	0	0.69618	1	32932	32932		42.835	14.341	1	4678800			45419	8491	33166	33433	44353	44353					-0.05861265367343549
RTFDAGEFTGW	11	Unmodified	_RTFDAGEFTGW_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	MULTI-SECPEP	A375_MHC_IP_R2	2	644.1926879882812	2	643.793652	1285.57275	-0.62572	-0.00040284	-0.12525	-8.0636E-05	-0.75097	-0.00048347	643.7933750523897	89.08	0.552	89.812	89.533	90.085	0.7318					25	10	3	0	0	0	0.30405	1	33887	33887		60.899	32.405	1	4608900			45420	8491	33166	33433	44354	44354					-0.05861265367343549
RTFEPRLL	8	Unmodified	_RTFEPRLL_					0	0	0		ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000568029.5_1_15:42462052-42470793:-|nuORF	ENSG00000166887|ENST00000318006|VPS39	ENSG00000166887|ENST00000318006|VPS39	MULTI-SECPEP	A375_MHC_IP_R1	1	516.7025146484375	2	516.303458	1030.59236	-0.4475	-0.00023104	-0.3989	-0.00020595	-0.8464	-0.000437	516.3032125765376	51.956	1.5241	51.956	51.575	53.099	0					61	29	3	0	0	0	0.64461	1	18426	18426		38.176	1.7094	1	20897000			45421	7127	33167	33434	44355	44355					0.07829155434069435
RTFEPRLL	8	Unmodified	_RTFEPRLL_					0	0	0		ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000568029.5_1_15:42462052-42470793:-|nuORF	ENSG00000166887|ENST00000318006|VPS39	ENSG00000166887|ENST00000318006|VPS39	MULTI-MSMS	A375_MHC_IP_R2	2	516.70263671875	2	516.303458	1030.59236	-0.87077	-0.00044958	-0.28613	-0.00014773	-1.1569	-0.00059731	516.3032719573425	51.035	2.0295	51.789	50.955	52.984	0.75406					55	39	3	0	0	0	0.57987	1	19156	19156		45.7	11.298	1	22726000			45422	7127	33167	33434	44356	44356					0.07829155434069435
RTFGGNKLY	9	Unmodified	_RTFGGNKLY_					0	0	0		ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	MULTI-SECPEP	A375_MHC_IP_R1	1	352.92559814453125	3	352.525936	1054.55598	-0.56392	-0.0001988	0.50636	0.00017851	-0.057564	-2.0293E-05	352.52605540927334	29.381	0.30382	29.381	29.149	29.453	0					11	5	3	0	0	0	0.11849	1	9182	9182		49.742	25.721	1	11192000			45423	3443	33168	33435	44357	44357					0.0308827853737057
RTFGGNKLY	9	Unmodified	_RTFGGNKLY_					0	0	0		ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	MULTI-MSMS	A375_MHC_IP_R2	2	528.6847534179688	2	528.285266	1054.55598	-1.0459	-0.00055252	-0.2074	-0.00010957	-1.2533	-0.00066209	528.2850968571855	28.559	0.75998	29.258	28.573	29.333	0.69849					25	14	4	0	0	0	0.027818	1	9851	9851		76.825	12.588	1	130150000			45424	3443	33168	33435	44358	44358					0.0308827853737057
RTFGGNKLY	9	Unmodified	_RTFGGNKLY_					0	0	0		ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	MULTI-SECPEP	A375_MHC_IP_R2	2	352.92572021484375	3	352.525936	1054.55598	-0.75192	-0.00026507	0.3212	0.00011323	-0.43072	-0.00015184	352.5259951195603	28.56	0.25326	29.259	29.03	29.283	0.69872					9	4	3	0	0	0	0.062502	1	9866	9866		60.899	37.11	1	23282000			45425	3443	33168	33435	44359	44359					0.0308827853737057
RTFGKQQW	8	Unmodified	_RTFGKQQW_					0	0	0		nc|ENSG00000149100|Q7L2H7-2|EIF3M;ENSG00000149100|ENST00000531120|EIF3M	nc|ENSG00000149100|Q7L2H7-2|EIF3M;ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	MULTI-SECPEP	A375_MHC_IP_R1	1	526.1767578125	2	525.777608	1049.54066	-0.51437	-0.00027044	-1.4941	-0.00078554	-2.0084	-0.001056	525.7769531655524	25.434	0.30706	25.434	25.255	25.562	0					8	5	2	0	0	0	0.38613	1	7433	7433		63.961	29.559	1	7979300			45426	5782;14672	33169	33436	44360	44360					0.01787411740178868
RTFKDSKYLY	10	Unmodified	_RTFKDSKYLY_					0	0	0		ENSG00000185532|ENST00000373980|PRKG1;nc|ENSG00000185532|Q13976-3|PRKG1;ENST00000373975.2_1_10:53822369-54053657:+|nuORF;nc|ENSG00000185532|Q13976|PRKG1	ENSG00000185532|ENST00000373980|PRKG1	ENSG00000185532|ENST00000373980|PRKG1	MULTI-MSMS	A375_MHC_IP_R1	1	441.6375427246094	3	440.903072	1319.68739	-0.34474	-0.000152	0.10517	4.6369E-05	-0.23957	-0.00010563	441.23749491498	29.001	0.4059	29.001	28.795	29.201	0					17	7	3	0	0	0	0.063124	1	9023	9023		72.187	49.412	1	4954100			45427	8674	33170	33437	44361	44361					0.04033044114612494
RTFKDSKYLY	10	Unmodified	_RTFKDSKYLY_					0	0	0		ENSG00000185532|ENST00000373980|PRKG1;nc|ENSG00000185532|Q13976-3|PRKG1;ENST00000373975.2_1_10:53822369-54053657:+|nuORF;nc|ENSG00000185532|Q13976|PRKG1	ENSG00000185532|ENST00000373980|PRKG1	ENSG00000185532|ENST00000373980|PRKG1	MULTI-SECPEP	A375_MHC_IP_R2	2	441.3025817871094	3	440.903072	1319.68739	-0.57422	-0.00025318	-0.2242	-9.8848E-05	-0.79842	-0.00035202	440.90301589619673	28.203	0.35486	28.881	28.655	29.01	0.67857					17	6	4	0	0	0	0.70912	1	9716	9716		37.251	17.625	1	6813900			45428	8674	33170	33437	44362	44362					0.04033044114612494
RTFKRLYQY	9	Unmodified	_RTFKRLYQY_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;GTF3C1|p.S767Vfs*7|1|0.47|ENSG00000077235|chr16:27497688-27497688|T/-|frameshift_variant	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-SECPEP	A375_MHC_IP_R1	1	425.97161865234375	3	425.571657	1273.69314	-0.11866	-5.0499E-05	-0.12588	-5.357E-05	-0.24454	-0.00010407	425.5715849321286	28.719	0.60722	28.719	28.491	29.098	0					35	11	4	0	0	0	0.46121	1	8882	8882		32.037	21.887	1	40858000			45429	1649	33171	33438	44363	44363					0.06724187416921268
RTFKRLYQY	9	Unmodified	_RTFKRLYQY_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;GTF3C1|p.S767Vfs*7|1|0.47|ENSG00000077235|chr16:27497688-27497688|T/-|frameshift_variant	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-SECPEP	A375_MHC_IP_R2	2	425.9714050292969	3	425.571657	1273.69314	-0.19024	-8.096E-05	-0.13956	-5.9394E-05	-0.3298	-0.00014035	425.5716188047935	27.817	0.40484	28.495	28.301	28.706	0.67857					24	7	4	0	0	0	0.13199	1	9528	9528		53.317	36.751	1	46692000			45430	1649	33171	33438	44364	44364					0.06724187416921268
RTFLRPPKV	9	Unmodified	_RTFLRPPKV_					0	0	0		ENST00000489277.5_1_1:28527761-28556683:-|nuORF;ENSG00000126698|ENST00000263697|DNAJC8;ENST00000554535.2_1_14:35899543-35899834:+|nuORF	ENST00000489277.5_1_1:28527761-28556683:-|nuORF	ENST00000489277.5_1_1:28527761-28556683:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	372.30133056640625	3	371.901226	1112.68185	0.31478	0.00011707	-0.0082029	-3.0507E-06	0.30657	0.00011401	371.90115299255154	34.106	1.01	34.106	33.547	34.557	0					45	19	3	0	0	0	0.36673	1	11139	11139		42.835	28.43	1	8893000			45431	4054	33172	33439	44365	44365					0.1300141011345204
RTFLRPPKV	9	Unmodified	_RTFLRPPKV_					0	0	0		ENST00000489277.5_1_1:28527761-28556683:-|nuORF;ENSG00000126698|ENST00000263697|DNAJC8;ENST00000554535.2_1_14:35899543-35899834:+|nuORF	ENST00000489277.5_1_1:28527761-28556683:-|nuORF	ENST00000489277.5_1_1:28527761-28556683:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	371.93572998046875	3	371.901226	1112.68185	0.27425	0.00010199	-0.31874	-0.00011854	-0.044497	-1.6548E-05	371.90105876082987	33.148	1.2211	33.9	33.229	34.45	0.75225					53	23	3	0	0	0	0.6421	2	11721	11721;11980		12.175	5.9829	1	6698200			45432	4054	33172	33439	44366;44367	44366					0.1300141011345204
RTFPDDRNFL	10	Unmodified	_RTFPDDRNFL_					0	0	0		nc|ENSG00000118257|O60462-2|NRP2;ENSG00000118257|ENST00000357785|NRP2;nc|ENSG00000118257|O60462|NRP2;nc|ENSG00000118257|O60462-4|NRP2;nc|ENSG00000118257|O60462-5|NRP2	nc|ENSG00000118257|O60462-2|NRP2	nc|ENSG00000118257|O60462-2|NRP2	MULTI-SECPEP	A375_MHC_IP_R1	1	428.30328369140625	3	427.550921	1279.63093	-0.044367	-1.8969E-05	0.55189	0.00023596	0.50752	0.00021699	427.55112090027615	56.838	0.56068	56.838	56.498	57.059	0					18	10	2	0	0	0	0.78163	1	20363	20363		22.486	10.855	1	1291700			45433	3534	33173	33440	44368	44368					0.002304162779410035
RTFPDDRNFL	10	Unmodified	_RTFPDDRNFL_					0	0	0		nc|ENSG00000118257|O60462-2|NRP2;ENSG00000118257|ENST00000357785|NRP2;nc|ENSG00000118257|O60462|NRP2;nc|ENSG00000118257|O60462-4|NRP2;nc|ENSG00000118257|O60462-5|NRP2	nc|ENSG00000118257|O60462-2|NRP2	nc|ENSG00000118257|O60462-2|NRP2	MULTI-SECPEP	A375_MHC_IP_R2	2	428.3028259277344	3	427.550921	1279.63093	-0.36782	-0.00015726	-0.32812	-0.00014029	-0.69594	-0.00029755	427.5506239231122	55.996	1.0177	56.746	56.134	57.152	0.75014					29	19	2	0	0	0	0.70461	1	21128	21128		27.289	23.173	1	861740			45434	3534	33173	33440	44369	44369					0.002304162779410035
RTFPDPTSW	9	Unmodified	_RTFPDPTSW_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	A375_MHC_IP_R2	2	554.226318359375	2	553.766906	1105.51926	-0.75494	-0.00041806	0.39948	0.00022122	-0.35545	-0.00019684	553.7670340440005	73.862	0.96643	74.599	74.094	75.06	0.73752					53	18	4	0	0	0	0.017012	2	27992	27935;27992		87.258	29.536	1	12756000			45435	7927	33174	33441	44370;44371	44371					-0.029280180792056854
RTFVAADGKSY	11	Unmodified	_RTFVAADGKSY_					0	0	0		ENSG00000135919|ENST00000409304|SERPINE2;chr2:224001922-224030072|455|26.05|0.76|5.1|-|ENST00000409840|SERPINE2,SERPINE2;nc|ENSG00000135919|P07093|SERPINE2;nc|ENSG00000135919|P07093-3|SERPINE2	ENSG00000135919|ENST00000409304|SERPINE2	ENSG00000135919|ENST00000409304|SERPINE2	MULTI-SECPEP	A375_MHC_IP_R1	1	608.2113647460938	2	607.811845	1213.60914	-0.63097	-0.00038351	-0.75839	-0.00046096	-1.3894	-0.00084447	607.8118181119083	26.742	0.40359	26.742	26.524	26.928	0					18	7	3	0	0	0	0.79214	1	8026	8026		54.259	38.11	1	6710300			45436	463	33175	33442	44372	44372					0.01087611529374044
RTFVAADGKSY	11	Unmodified	_RTFVAADGKSY_					0	0	0		ENSG00000135919|ENST00000409304|SERPINE2;chr2:224001922-224030072|455|26.05|0.76|5.1|-|ENST00000409840|SERPINE2,SERPINE2;nc|ENSG00000135919|P07093|SERPINE2;nc|ENSG00000135919|P07093-3|SERPINE2	ENSG00000135919|ENST00000409304|SERPINE2	ENSG00000135919|ENST00000409304|SERPINE2	MULTI-MSMS	A375_MHC_IP_R2	2	405.9436340332031	3	405.543655	1213.60914	-0.40026	-0.00016232	-2.1874	-0.00088708	-2.5876	-0.0010494	405.5438048419595	26.147	0.45635	26.807	26.602	27.058	0.65992					24	8	4	0	0	0	0.6683	1	8838	8838		18.013	8.7693	1	4019000			45437	463	33175	33442	44373	44373					0.01087611529374044
RTFVAADGKSY	11	Unmodified	_RTFVAADGKSY_					0	0	0		ENSG00000135919|ENST00000409304|SERPINE2;chr2:224001922-224030072|455|26.05|0.76|5.1|-|ENST00000409840|SERPINE2,SERPINE2;nc|ENSG00000135919|P07093|SERPINE2;nc|ENSG00000135919|P07093-3|SERPINE2	ENSG00000135919|ENST00000409304|SERPINE2	ENSG00000135919|ENST00000409304|SERPINE2	MULTI-SECPEP	A375_MHC_IP_R2	2	608.2114868164062	2	607.811845	1213.60914	-0.8364	-0.00050838	-0.17284	-0.00010506	-1.0092	-0.00061343	607.8118408081917	26.128	0.35503	26.788	26.653	27.008	0.65992					17	6	3	0	0	0	0.55677	1	8823	8823		64.688	46.541	1	7390000			45438	463	33175	33442	44374	44374					0.01087611529374044
RTFVRWGEA	9	Unmodified	_RTFVRWGEA_					0	0	0			REV__ENSG00000197119|ENST00000359232|SLC25A29	REV__ENSG00000197119|ENST00000359232|SLC25A29	MSMS	A375_MHC_IP_R1	1	374.4336853027344	3	374.533202	1120.57778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.118	1	39.118	38.618	39.618	0								0	0	0	0.15468	1	13336	13336		9.544	3.3096	1		+		45439	22255	33176	33443	44375	44375					0.022310832859375296
RTFVWPAHF	9	Unmodified	_RTFVWPAHF_					0	0	0		nc|ENSG00000119725|Q86VK4-2|ZNF410;ENST00000412490.7_1_14:74358863-74376162:+|nuORF;nc|ENSG00000119725|Q86VK4-4|ZNF410;nc|ENSG00000119725|Q86VK4-3|ZNF410;ENSG00000119725|ENST00000555044|ZNF410;nc|ENSG00000119725|Q86VK4-5|ZNF410	nc|ENSG00000119725|Q86VK4-2|ZNF410	nc|ENSG00000119725|Q86VK4-2|ZNF410	MULTI-SECPEP	A375_MHC_IP_R2	2	387.1593322753906	3	387.538176	1159.5927	-0.13665	-5.2959E-05	0.49615	0.00019228	0.3595	0.00013932	387.53819537077936	76.48	0.45734	77.221	76.994	77.451	0.74052					17	8	3	0	0	0	0.65246	1	29070	29070		10.8	6.2706	1	1261200			45440	3617	33177	33444	44376	44376					0.01928575153942802
RTFVWPAHF	9	Unmodified	_RTFVWPAHF_					0	0	0		nc|ENSG00000119725|Q86VK4-2|ZNF410;ENST00000412490.7_1_14:74358863-74376162:+|nuORF;nc|ENSG00000119725|Q86VK4-4|ZNF410;nc|ENSG00000119725|Q86VK4-3|ZNF410;ENSG00000119725|ENST00000555044|ZNF410;nc|ENSG00000119725|Q86VK4-5|ZNF410	nc|ENSG00000119725|Q86VK4-2|ZNF410	nc|ENSG00000119725|Q86VK4-2|ZNF410	MULTI-MATCH	A375_MHC_IP_R1	1		3	387.538176	1159.5927	0.20619	7.9907E-05	0.10571	4.0967E-05	0.3119	0.00012087	387.53813791490103	77.392	0.45415	77.392	77.133	77.588	0	0.085846	-9.6995E-05	NaN	10.8	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1468600			45441	3617	33177	33444							0.01928575153942802
RTGIFPYRF	9	Unmodified	_RTGIFPYRF_					0	0	0		ENSG00000107554|ENST00000324109|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	MULTI-MSMS	A375_MHC_IP_R2	2	386.6137390136719	3	386.213581	1155.61891	-0.018602	-7.1844E-06	0.33357	0.00012883	0.31496	0.00012164	386.21368616267694	68.33	0.50656	69.065	68.816	69.323	0.73511					19	9	3	0	0	0	0.50355	1	25932	25932		19.626	14.729	1	1708600			45442	2742	33178	33445	44377	44377					0.04732844325417318
RTGIFPYRF	9	Unmodified	_RTGIFPYRF_					0	0	0		ENSG00000107554|ENST00000324109|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	MULTI-MATCH	A375_MHC_IP_R1	1		3	386.213581	1155.61891	0.66254	0.00025588	-0.16243	-6.2732E-05	0.50011	0.00019315	386.2135280638563	69.283	0.40713	69.283	68.969	69.377	0	0.10884	-0.00029911	NaN	19.626	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1858100			45443	2742	33178	33445							0.04732844325417318
RTGLGLRHAW	10	Unmodified	_RTGLGLRHAW_					0	0	0		ENST00000494187.1_1_7:30821643-30825836:+|nuORF	ENST00000494187.1_1_7:30821643-30825836:+|nuORF	ENST00000494187.1_1_7:30821643-30825836:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	389.9561767578125	3	389.55623	1165.64686	0.050832	1.9802E-05	-0.22644	-8.8211E-05	-0.17561	-6.8409E-05	389.5561423995493	27.248	1.261	27.248	26.474	27.735	0					90	24	5	0	0	0	0.70741	1	8263	8263		8.9762	0.23084	1	187460000			45444	12687	33179	33446	44378	44378					0.07066167305492854
RTGNIPSI	8	Unmodified	_RTGNIPSI_					0	0	0		ENST00000562968.1_1_16:27356608-27356716:+|nuORF	ENST00000562968.1_1_16:27356608-27356716:+|nuORF	ENST00000562968.1_1_16:27356608-27356716:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	429.6454772949219	2	429.245609	856.476666	-0.189	-8.1128E-05	-1.389	-0.00059624	-1.578	-0.00067737	429.2447311563376	41.949	1.2229	42.723	41.895	43.118	0.77451					33	23	3	0	0	0	0.57209	1	15603	15603		46.021	0	1	4784400			45445	13519	33180	33447	44379	44379					0.042686315832384025
RTGPPRLL	8	Unmodified	_RTGPPRLL_					0	0	0		nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	MULTI-MSMS	A375_MHC_IP_R1	1	455.684814453125	2	455.285069	908.555585	-0.19304	-8.7889E-05	0.11874	5.4062E-05	-0.074299	-3.3827E-05	455.2850795427743	33.541	0.45569	33.541	33.342	33.798	0					12	8	2	0	0	0	0.75389	1	10992	10992		19.257	2.3147	1	2574800			45446	8766	33181	33448	44380	44380					0.0976490360818616
RTGRRRGPG	9	Unmodified	_RTGRRRGPG_					0	0	0		ENST00000361221.7_1_1:17981159-17982543:+|nuORF	ENST00000361221.7_1_1:17981159-17982543:+|nuORF	ENST00000361221.7_1_1:17981159-17982543:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	507.6958923339844	2	506.797198	1011.57984	-0.37715	-0.00019114	0.58542	0.00029669	0.20827	0.00010555	506.798270360552	25.042	0.55574	25.042	24.852	25.408	0					20	10	3	0	0	0	0.67332	1	7215	7215		9.3831	0	1	13728000			45447	11039	33182	33449	44381	44381					0.07451556814419291
RTGSTKVTVP	10	Unmodified	_RTGSTKVTVP_					0	0	0			REV__OLFM3|p.S327Ifs*12|1|0.14|ENSG00000118733|chr1:101804697-101804698|-/GACTACAATG|frameshift_variant	REV__OLFM3|p.S327Ifs*12|1|0.14|ENSG00000118733|chr1:101804697-101804698|-/GACTACAATG|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	523.703125	2	523.303655	1044.59276	-0.54498	-0.00028519	-0.10731	-5.6154E-05	-0.65228	-0.00034134	523.3034170946491	123.08	3.6957	123.46	121.81	125.5	0.3766					181	72	4	0	0	0	0.71047	1	46570	46570		7.609	1.4032	1	222110000	+		45448	18052	33183	33450	44382	44382					0.07224530363305348
RTGTYRQLF	9	Unmodified	_RTGTYRQLF_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENSG00000152086|ENST00000312988|TUBA3E;ENST00000550254.1_1_12:49580068-49580335:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-SECPEP	A375_MHC_IP_R1	1	381.6089172363281	3	381.208607	1140.60399	0.18718	7.1354E-05	0.29325	0.00011179	0.48042	0.00018314	381.2086773689642	37.933	0.4598	37.933	37.658	38.118	0					27	8	5	0	0	0	0.070665	1	12798	12798		63.227	38.237	1	11254000			45449	3846	33184	33451	44383	44383					0.03931352457425419
RTGTYRQLF	9	Unmodified	_RTGTYRQLF_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENSG00000152086|ENST00000312988|TUBA3E;ENST00000550254.1_1_12:49580068-49580335:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	A375_MHC_IP_R2	2	571.708984375	2	571.309272	1140.60399	-0.90861	-0.0005191	0.54249	0.00030993	-0.36612	-0.00020917	571.3095625392602	36.919	0.50707	37.69	37.461	37.968	0.7709					20	9	3	0	0	0	0.1915	1	13474	13474		38.615	14.594	1	8418100			45450	3846	33184	33451	44384	44384					0.03931352457425419
RTGTYRQLF	9	Unmodified	_RTGTYRQLF_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENSG00000152086|ENST00000312988|TUBA3E;ENST00000550254.1_1_12:49580068-49580335:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	571.309272	1140.60399	-0.90861	-0.0005191	0.54249	0.00030993	-0.36612	-0.00020917	571.3095625392602	36.919	0.50707	37.69	37.461	37.968	0.7709	-0.12131	0.00024602	NaN	38.615	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8418100			45451	3846	33184	33451							0.03931352457425419
RTGTYRQLF	9	Unmodified	_RTGTYRQLF_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENSG00000152086|ENST00000312988|TUBA3E;ENST00000550254.1_1_12:49580068-49580335:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MATCH	A375_MHC_IP_R2	2		3	381.208607	1140.60399	-0.64995	-0.00024777	0.82372	0.00031401	0.17377	6.6241E-05	381.20889767981566	36.919	0.76142	37.69	37.41	38.171	0.7709	-0.12128	0.00029184	NaN	63.227	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9878900			45452	3846	33184	33451							0.03931352457425419
RTHKPRFIK	9	Unmodified	_RTHKPRFIK_					0	0	0			REV__ENSG00000115461|ENST00000233813|IGFBP5	REV__ENSG00000115461|ENST00000233813|IGFBP5	MSMS	A375_MHC_IP_R1	1	394.7466735839844	3	394.912125	1181.71454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.408	1	13.408	12.908	13.908	0								0	0	0	0.15486	1	3070	3070		0.20686	0.083992	1		+		45453	17888	33185	33452	44385	44385					0.13095617236285761
RTHKPRFIK	9	Unmodified	_RTHKPRFIK_					0	0	0			REV__ENSG00000115461|ENST00000233813|IGFBP5	REV__ENSG00000115461|ENST00000233813|IGFBP5	MSMS	A375_MHC_IP_R1	1	394.7467956542969	3	394.912125	1181.71454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.03	1	15.03	14.53	15.53	0								0	0	0	0.15486	1	3454	3454		0.20686	0.083992	1		+		45454	17888	33185	33452	44386	44386					0.13095617236285761
RTHKPRFIK	9	Unmodified	_RTHKPRFIK_					0	0	0			REV__ENSG00000115461|ENST00000233813|IGFBP5	REV__ENSG00000115461|ENST00000233813|IGFBP5	MSMS	A375_MHC_IP_R2	2	394.7466125488281	3	394.912125	1181.71454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.4968	1	2.9558	2.4558	3.4558	0.45901								0	0	0	0.15486	1	806	806		0.20686	0.083992	1		+		45455	17888	33185	33452	44387	44387					0.13095617236285761
RTHKPRFIK	9	Unmodified	_RTHKPRFIK_					0	0	0			REV__ENSG00000115461|ENST00000233813|IGFBP5	REV__ENSG00000115461|ENST00000233813|IGFBP5	MSMS	A375_MHC_IP_R2	2	394.74676513671875	3	394.912125	1181.71454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.6292	1	4.0651	3.5651	4.5651	0.43585								0	0	0	0.15486	1	1177	1177		0.20686	0.083992	1		+		45456	17888	33185	33452	44388	44388					0.13095617236285761
RTHKPRFIK	9	Unmodified	_RTHKPRFIK_					0	0	0			REV__ENSG00000115461|ENST00000233813|IGFBP5	REV__ENSG00000115461|ENST00000233813|IGFBP5	MSMS	A375_MHC_IP_R2	2	394.746826171875	3	394.912125	1181.71454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.346	1	10.793	10.293	11.293	0.44698								0	0	0	0.15486	1	3214	3214		0.20686	0.083992	1		+		45457	17888	33185	33452	44389	44389					0.13095617236285761
RTHKPRFIK	9	Unmodified	_RTHKPRFIK_					0	0	0			REV__ENSG00000115461|ENST00000233813|IGFBP5	REV__ENSG00000115461|ENST00000233813|IGFBP5	MSMS	A375_MHC_IP_R2	2	394.7467041015625	3	394.912125	1181.71454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.035	1	13.579	13.079	14.079	0.54443								0	0	0	0.15486	1	4011	4011		0.20686	0.083992	1		+		45458	17888	33185	33452	44390	44390					0.13095617236285761
RTHSLLLLL	9	Unmodified	_RTHSLLLLL_					0	0	0		ENSG00000258818|ENST00000555835|RNASE4	ENSG00000258818|ENST00000555835|RNASE4	ENSG00000258818|ENST00000555835|RNASE4	MULTI-SECPEP	A375_MHC_IP_R1	1	356.29730224609375	3	355.897481	1064.67061	0.26487	9.4267E-05	-0.41363	-0.00014721	-0.14876	-5.2944E-05	355.8972841195602	92.675	0.45826	92.675	92.463	92.922	0					14	8	2	0	0	0	0.69381	1	34077	34077		14.957	5.9809	1	2237100			45459	9921	33186	33453	44391	44391					0.14086588019335977
RTHSLLLLL	9	Unmodified	_RTHSLLLLL_					0	0	0		ENSG00000258818|ENST00000555835|RNASE4	ENSG00000258818|ENST00000555835|RNASE4	ENSG00000258818|ENST00000555835|RNASE4	MULTI-MSMS	A375_MHC_IP_R2	2	355.5365295410156	3	355.897481	1064.67061	-0.12323	-4.3858E-05	0.061754	2.1978E-05	-0.061479	-2.188E-05	355.89745434294133	91.429	0.50809	92.164	91.919	92.427	0.73451					16	9	2	0	0	0	0.76958	1	34762	34762		0.77653	0.27058	1	1900700			45460	9921	33186	33453	44392	44392					0.14086588019335977
RTIATALEY	9	Unmodified	_RTIATALEY_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1;ENST00000549147.1_1_12:56113198-56113390:+|nuORF	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.6843872070312	2	519.284931	1036.55531	-1.1195	-0.00058132	-0.083233	-4.3222E-05	-1.2027	-0.00062454	519.2848825202916	53.78	0.61634	54.531	54.249	54.866	0.75105					20	11	2	0	0	0	0.33896	1	20290	20290		47.594	16.958	1	18432000			45461	4683	33187	33454	44393	44393					0.03849439097643881
RTIATALEY	9	Unmodified	_RTIATALEY_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1;ENST00000549147.1_1_12:56113198-56113390:+|nuORF	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	519.284931	1036.55531	-0.44879	-0.00023305	0.033938	1.7624E-05	-0.41485	-0.00021543	519.2849575010102	54.602	0.81186	54.602	54.163	54.975	0	0.035332	4.9326E-05	NaN	47.594	39	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18980000			45462	4683	33187	33454							0.03849439097643881
RTIEDFNKF	9	Unmodified	_RTIEDFNKF_					0	0	0		nc|ENSG00000040633|Q9BUL5-2|PHF23;nc|ENSG00000040633|Q9BUL5-3|PHF23;nc|ENSG00000040633|Q9BUL5-4|PHF23;ENSG00000040633|ENST00000320316|PHF23	nc|ENSG00000040633|Q9BUL5-2|PHF23	nc|ENSG00000040633|Q9BUL5-2|PHF23	MULTI-SECPEP	A375_MHC_IP_R1	1	584.6431884765625	2	585.301113	1168.58767	-0.33851	-0.00019813	0.031523	1.8451E-05	-0.30699	-0.00017968	585.3010428418883	46.52	0.75795	46.52	46.245	47.003	0					43	14	4	0	0	0	0.062502	1	16317	16317		65.474	25.524	1	44082000			45463	1165	33188	33455	44394	44394					0.010122265006430098
RTIEDFNKF	9	Unmodified	_RTIEDFNKF_					0	0	0		nc|ENSG00000040633|Q9BUL5-2|PHF23;nc|ENSG00000040633|Q9BUL5-3|PHF23;nc|ENSG00000040633|Q9BUL5-4|PHF23;ENSG00000040633|ENST00000320316|PHF23	nc|ENSG00000040633|Q9BUL5-2|PHF23	nc|ENSG00000040633|Q9BUL5-2|PHF23	MULTI-MSMS	A375_MHC_IP_R2	2	390.9363708496094	3	390.536501	1168.58767	-0.1613	-6.2993E-05	0.2654	0.00010365	0.10411	4.0658E-05	390.5365753423522	45.733	0.5026	46.498	46.201	46.704	0.76519					12	9	2	0	0	0	0.068433	1	17107	17107		57.108	38.734	1	1573600			45464	1165	33188	33455	44395	44395					0.010122265006430098
RTIEDFNKF	9	Unmodified	_RTIEDFNKF_					0	0	0		nc|ENSG00000040633|Q9BUL5-2|PHF23;nc|ENSG00000040633|Q9BUL5-3|PHF23;nc|ENSG00000040633|Q9BUL5-4|PHF23;ENSG00000040633|ENST00000320316|PHF23	nc|ENSG00000040633|Q9BUL5-2|PHF23	nc|ENSG00000040633|Q9BUL5-2|PHF23	MULTI-SECPEP	A375_MHC_IP_R2	2	584.6433715820312	2	585.301113	1168.58767	-0.48884	-0.00028612	0.09323	5.4567E-05	-0.39561	-0.00023155	585.3010861357147	45.712	0.80671	46.478	46.201	47.008	0.76519					42	15	4	0	0	0	0.016541	1	17089	17089		107.1	50.923	1	31442000			45465	1165	33188	33455	44396	44396					0.010122265006430098
RTIEYLEEV	9	Unmodified	_RTIEYLEEV_					0	0	0		ENSG00000084754|ENST00000380649|HADHA	ENSG00000084754|ENST00000380649|HADHA	ENSG00000084754|ENST00000380649|HADHA	MULTI-SECPEP	A375_MHC_IP_R1	1	576.7007446289062	2	576.300778	1150.587	-0.35814	-0.00020639	0.37064	0.0002136	0.012506	7.2074E-06	576.3008915524974	66.249	0.55791	66.249	66.022	66.58	0					27	10	3	0	0	0	0.05217	1	23979	23979		89.401	13.64	1	10946000			45466	1805	33189	33456	44397	44397					0.01773387060939058
RTIEYLEEV	9	Unmodified	_RTIEYLEEV_					0	0	0		ENSG00000084754|ENST00000380649|HADHA	ENSG00000084754|ENST00000380649|HADHA	ENSG00000084754|ENST00000380649|HADHA	MULTI-SECPEP	A375_MHC_IP_R2	2	576.7005004882812	2	576.300778	1150.587	-0.30744	-0.00017718	-0.0095049	-5.4777E-06	-0.31695	-0.00018266	576.3006921423416	65.459	0.5574	66.197	65.917	66.475	0.73811					26	10	3	0	0	0	0.11849	1	24783	24783		70.332	12.61	1	13784000			45467	1805	33189	33456	44398	44398					0.01773387060939058
RTIKIRNISY	10	Unmodified	_RTIKIRNISY_					0	0	0		ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	MULTI-MSMS	A375_MHC_IP_R1	1	422.3224792480469	3	421.922578	1262.7459	0.075135	3.1701E-05	0.14435	6.0906E-05	0.21949	9.2608E-05	421.9225732619371	31.633	0.3045	31.633	31.465	31.769	0					12	5	3	0	0	0	0.70148	1	10160	10160		11.631	3.686	1	3480300			45468	6661	33190	33457	44399	44399					0.12504145479761064
RTIKIRNISY	10	Unmodified	_RTIKIRNISY_					0	0	0		ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	MULTI-MSMS	A375_MHC_IP_R2	2	421.96612548828125	3	421.922578	1262.7459	-0.14155	-5.9721E-05	0.27204	0.00011478	0.1305	5.5059E-05	421.92262918074545	30.79	0.40305	31.508	31.266	31.669	0.71857					12	7	2	0	0	0	0.57132	2	10817	10817;10857		23.016	8.7975	1	2950900			45469	6661	33190	33457	44400;44401	44400					0.12504145479761064
RTILVDNNTW	10	Unmodified	_RTILVDNNTW_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A	ENSG00000134910|ENST00000392708|STT3A	ENSG00000134910|ENST00000392708|STT3A	MULTI-SECPEP	A375_MHC_IP_R1	1	616.7250366210938	2	616.325119	1230.63569	-0.66821	-0.00041183	0.38359	0.00023642	-0.28462	-0.00017542	616.325368942961	67.38	1.169	67.38	66.99	68.159	0					59	22	4	0	0	0	0.072569	1	24357	24357		77.049	45.78	1	71588000			45470	4626	33191	33458	44402	44402					0.029593004206844853
RTILVDNNTW	10	Unmodified	_RTILVDNNTW_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A	ENSG00000134910|ENST00000392708|STT3A	ENSG00000134910|ENST00000392708|STT3A	MULTI-SECPEP	A375_MHC_IP_R2	2	616.7251586914062	2	616.325119	1230.63569	-0.75466	-0.00046512	0.29602	0.00018244	-0.45865	-0.00028268	616.325331077345	66.574	1.1707	67.31	66.78	67.951	0.73631					64	22	4	0	0	0	0.023413	1	25136	25136		118.21	91.941	1	62761000			45471	4626	33191	33458	44403	44403					0.029593004206844853
RTIQAHEGF	9	Unmodified	_RTIQAHEGF_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	A375_MHC_IP_R1	1	530.172119140625	2	529.772522	1057.53049	-0.86225	-0.0004568	0.086646	4.5903E-05	-0.7756	-0.00041089	529.7724900090092	23.505	0.25457	23.505	23.381	23.635	0					8	4	3	0	0	0	0.1915	1	6477	6477		38.615	15.878	1	6456900			45472	6895	33192	33459	44404	44404					0.004028040149478329
RTIQAHEGF	9	Unmodified	_RTIQAHEGF_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	A375_MHC_IP_R2	2	530.1721801757812	2	529.772522	1057.53049	-0.91686	-0.00048573	-0.63033	-0.00033393	-1.5472	-0.00081966	529.7724927083657	21.132	0.35306	21.751	21.575	21.928	0.61932					9	6	2	0	0	0	0.31062	1	6660	6660		29.841	6.6922	1	1455000			45473	6895	33192	33459	44405	44405					0.004028040149478329
RTIQTPIGSTW	11	Unmodified	_RTIQTPIGSTW_					0	0	0		nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A;ENSG00000253797|ENST00000521776|UTP14C	nc|ENSG00000156697|Q9BVJ6-3|UTP14A	nc|ENSG00000156697|Q9BVJ6-3|UTP14A	MULTI-MSMS	A375_MHC_IP_R1	1	630.7408447265625	2	630.340769	1258.66699	-0.12464	-7.8563E-05	0.044589	2.8106E-05	-0.080047	-5.0457E-05	630.340813090155	69.38	0.66127	69.38	68.969	69.631	0					26	12	3	0	0	0	0.048026	1	25150	25150		102.55	72.708	1	5574100			45474	6206	33193	33460	44406	44406					0.04799873454817316
RTIQTPIGSTW	11	Unmodified	_RTIQTPIGSTW_					0	0	0		nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A;ENSG00000253797|ENST00000521776|UTP14C	nc|ENSG00000156697|Q9BVJ6-3|UTP14A	nc|ENSG00000156697|Q9BVJ6-3|UTP14A	MULTI-MSMS	A375_MHC_IP_R2	2	630.740478515625	2	630.340769	1258.66699	-0.70221	-0.00044263	0.013772	8.6813E-06	-0.68844	-0.00043395	630.3408829579656	68.612	0.65815	69.347	69.018	69.677	0.73511					29	12	4	0	0	0	0.048026	1	25968	25968		84.738	54.897	1	6117400			45475	6206	33193	33460	44407	44407					0.04799873454817316
RTIRSYREL	9	Unmodified	_RTIRSYREL_					0	0	0		ENSG00000132329|ENST00000254661|RAMP1	ENSG00000132329|ENST00000254661|RAMP1	ENSG00000132329|ENST00000254661|RAMP1	MULTI-SECPEP	A375_MHC_IP_R1	1	399.25872802734375	3	398.563161	1192.66765	-0.17205	-6.8572E-05	-0.8726	-0.00034779	-1.0446	-0.00041636	398.56275906717076	23.1	0.96177	23.1	22.673	23.635	0					31	18	2	0	0	0	0.65339	1	6297	6297		17.572	6.054	1	20843000			45476	4392	33194	33461	44408	44408					0.07902712894519937
RTIVIRRDY	9	Unmodified	_RTIVIRRDY_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	A375_MHC_IP_R1	1	398.3033142089844	3	397.903406	1190.68839	-0.35625	-0.00014175	0.19991	7.9545E-05	-0.15634	-6.2207E-05	397.90349397183917	24.173	0.8103	24.173	24.042	24.852	0					51	15	5	0	0	0	0.0091119	3	6793	6793;6870;6909		101.12	71.678	1	323950000			45477	5311	33195	33462	44409;44410;44411	44409					0.10067303274172446
RTIVIRRDY	9	Unmodified	_RTIVIRRDY_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	A375_MHC_IP_R2	2	398.30322265625	3	397.903406	1190.68839	-0.3854	-0.00015335	-0.094891	-3.7758E-05	-0.48029	-0.00019111	397.903393554459	23.458	0.45484	24.088	23.878	24.333	0.63014					26	8	4	0	0	0	0.0091119	2	7529	7523;7529		101.12	69.48	1	294620000			45478	5311	33195	33462	44412;44413	44413					0.10067303274172446
RTIVIRRDY	9	Unmodified	_RTIVIRRDY_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-SECPEP	A375_MHC_IP_R2	2	397.6032409667969	3	397.903406	1190.68839	-0.34042	-0.00013545	-0.049021	-1.9505E-05	-0.38944	-0.00015496	397.90338079054936	23.881	0.66172	24.511	24.283	24.944	0.63014					30	12	4	0	0	0	0.40495	1	7766	7766		42.068	31.169	1	70830000			45479	5311	33195	33462	44414	44414					0.10067303274172446
RTIVPSRE	8	Unmodified	_RTIVPSRE_					0	0	0		chr14:102233789-102234530|145|11.86|0.07|7.42|-|2|TE_info:HERVFH21-int,HERVFH21-int_dup103,ERV1,LTR,donor,+,102234530,102239533|MOK,None|73	chr14:102233789-102234530|145|11.86|0.07|7.42|-|2|TE_info:HERVFH21-int,HERVFH21-int_dup103,ERV1,LTR,donor,+,102234530,102239533|MOK,None|73	chr14:102233789-102234530|145|11.86|0.07|7.42|-|2|TE_info:HERVFH21-int,HERVFH21-int_dup103,ERV1,LTR,donor,+,102234530,102239533|MOK,None|73	MULTI-MSMS	A375_MHC_IP_R1	1	479.6772155761719	2	479.277441	956.540328	-0.2405	-0.00011527	0.24507	0.00011745	0.0045651	2.188E-06	479.2774316255571	109.94	4.5331	109.94	108.36	112.89	0					246	88	4	0	0	0	0.77741	1	40038	40038		4.3292	0	1	18064000			45480	429	33196	33463	44415	44415					0.060319920203255606
RTIYENRIY	9	Unmodified	_RTIYENRIY_					0	0	0		nc|ENSG00000244687|Q13404-1|UBE2V1;ENST00000397758.2_1_3:175436135-175436456:-|nuORF;ENSG00000244687|ENST00000371674|UBE2V1;ENST00000467839.5_1_20:48700476-48729665:-|nuORF;nc|ENSG00000244687|Q13404-7|UBE2V1;nc|ENSG00000244687|Q13404-2|UBE2V1	nc|ENSG00000244687|Q13404-1|UBE2V1;nc|ENSG00000244687|Q13404-7|UBE2V1	nc|ENSG00000244687|Q13404-1|UBE2V1	MULTI-SECPEP	A375_MHC_IP_R1	1	410.6384582519531	3	409.887533	1226.64077	-0.085639	-3.5102E-05	0.22469	9.2098E-05	0.13905	5.6996E-05	409.88754402350304	34.503	0.40485	34.503	34.303	34.708	0					9	7	2	0	0	0	0.78719	1	11455	11455		5.7834	1.9071	1	1611200			45481	14917;14918	33197	33464	44416	44416					0.036516042833454776
RTKDIEDVFY	10	Unmodified	_RTKDIEDVFY_					0	0	0		ENST00000578430.1_1_17:56083680-56084618:-|nuORF;nc|ENSG00000136450|Q07955-3|SRSF1;ENSG00000136450|ENST00000258962|SRSF1;nc|ENSG00000136450|Q07955-2|SRSF1	ENST00000578430.1_1_17:56083680-56084618:-|nuORF	ENST00000578430.1_1_17:56083680-56084618:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	429.61883544921875	3	429.218949	1284.63502	-0.11436	-4.9084E-05	-0.087587	-3.7594E-05	-0.20194	-8.6678E-05	429.2189124869609	57.419	0.50913	57.419	57.109	57.618	0					30	9	4	0	0	0	0.92055	1	20572	20572		12.228	5.6041	1	4987800			45482	4790	33198	33465	44417	44417					0.0040846098097517824
RTKDIEDVFY	10	Unmodified	_RTKDIEDVFY_					0	0	0		ENST00000578430.1_1_17:56083680-56084618:-|nuORF;nc|ENSG00000136450|Q07955-3|SRSF1;ENSG00000136450|ENST00000258962|SRSF1;nc|ENSG00000136450|Q07955-2|SRSF1	ENST00000578430.1_1_17:56083680-56084618:-|nuORF	ENST00000578430.1_1_17:56083680-56084618:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	429.29071044921875	3	429.218949	1284.63502	-0.59253	-0.00025433	0.071737	3.0791E-05	-0.5208	-0.00022354	429.21889894133864	56.572	0.56134	57.323	57.051	57.612	0.75014					33	10	4	0	0	0	0.70565	1	21300	21300		9.7643	5.6476	1	5872200			45483	4790	33198	33465	44418	44418					0.0040846098097517824
RTKDIEDVFY	10	Unmodified	_RTKDIEDVFY_					0	0	0		ENST00000578430.1_1_17:56083680-56084618:-|nuORF;nc|ENSG00000136450|Q07955-3|SRSF1;ENSG00000136450|ENST00000258962|SRSF1;nc|ENSG00000136450|Q07955-2|SRSF1	ENST00000578430.1_1_17:56083680-56084618:-|nuORF	ENST00000578430.1_1_17:56083680-56084618:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	643.7242431640625	2	643.324785	1284.63502	-1.093	-0.00070315	0.015836	1.0188E-05	-1.0772	-0.00069296	643.3250131935811	56.573	0.7122	57.323	57.051	57.763	0.75014					24	13	3	0	0	0	0.91393	1	21360	21360		27.223	17.84	1	4377200			45484	4790	33198	33465	44419	44419					0.0040846098097517824
RTKDILIRF	9	Unmodified	_RTKDILIRF_					0	0	0		ENST00000519705.1_1_8:43052051-43054709:+|nuORF;ENSG00000165102|ENST00000379644|HGSNAT;nc|ENSG00000165102|Q68CP4|HGSNAT;ENST00000523989.1_1_8:43052051-43052222:+|nuORF	ENST00000519705.1_1_8:43052051-43054709:+|nuORF	ENST00000519705.1_1_8:43052051-43054709:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	388.30816650390625	3	387.908269	1160.70298	0.4927	0.00019112	-0.31009	-0.00012029	0.18261	7.0836E-05	387.9081269261923	48.096	1.0625	48.096	47.819	48.882	0					51	20	5	0	0	0	0.0093675	1	16906	16906		105.35	42.118	1	101990000			45485	6912	33199	33466	44420	44420					0.12905375422315046
RTKDILIRF	9	Unmodified	_RTKDILIRF_					0	0	0		ENST00000519705.1_1_8:43052051-43054709:+|nuORF;ENSG00000165102|ENST00000379644|HGSNAT;nc|ENSG00000165102|Q68CP4|HGSNAT;ENST00000523989.1_1_8:43052051-43052222:+|nuORF	ENST00000519705.1_1_8:43052051-43054709:+|nuORF	ENST00000519705.1_1_8:43052051-43054709:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	388.30841064453125	3	387.908269	1160.70298	0.053776	2.086E-05	0.15691	6.0865E-05	0.21068	8.1726E-05	387.90831835821973	46.98	0.81301	47.741	47.462	48.275	0.76127					52	15	5	0	0	0	0.017116	2	17568	17568;17608		87.123	31.889	1	84419000			45486	6912	33199	33466	44421;44422	44421					0.12905375422315046
RTKDLIIEQRF	11	Unmodified	_RTKDLIIEQRF_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	A375_MHC_IP_R1	1	474.00848388671875	3	473.608659	1417.80415	-0.21985	-0.00010412	-0.21855	-0.00010351	-0.4384	-0.00020763	473.6085890291584	43.012	0.40705	43.012	42.79	43.197	0					19	7	4	0	0	0	0.50702	1	14920	14920		30.572	19.301	1	5446100			45487	3330	33200	33467	44423	44423					0.11195782334334581
RTKDLIIEQRF	11	Unmodified	_RTKDLIIEQRF_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	A375_MHC_IP_R2	2	474.00848388671875	3	473.608659	1417.80415	-0.50359	-0.00023851	-0.11014	-5.2164E-05	-0.61374	-0.00029067	473.60864032542185	42.112	0.40848	42.884	42.656	43.065	0.7724					17	7	3	0	0	0	0.50702	1	15651	15651		30.572	19.301	1	5665600			45488	3330	33200	33467	44424	44424					0.11195782334334581
RTKDLIKRI	9	Unmodified	_RTKDLIKRI_					0	0	0			REV__nc|ENSG00000158987|Q8TEU7-6|RAPGEF6	REV__nc|ENSG00000158987|Q8TEU7-6|RAPGEF6	MSMS	A375_MHC_IP_R1	1	381.6121826171875	3	381.583785	1141.72953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.011	1	32.011	31.511	32.511	0								0	0	0	0.15486	1	10301	10301		4.5289	0	1		+		45489	20097	33201	33468	44425	44425					0.16433064313650902
RTKFARGVH	9	Unmodified	_RTKFARGVH_					0	0	0		ENST00000450728.1_1_2:200332930-200334494:+|nuORF	ENST00000450728.1_1_2:200332930-200334494:+|nuORF	ENST00000450728.1_1_2:200332930-200334494:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	358.29498291015625	3	357.877192	1070.60975	-0.46246	-0.00016551	-1.714	-0.00061339	-2.1764	-0.00077889	357.8766192913152	23.909	0.35799	24.54	24.333	24.691	0.63014					7	4	2	0	0	0	0.63327	1	7839	7839		17.443	9.8337	1	3749900			45490	12070	33202	33469	44426	44426					0.07726495759743557
RTKGGRVLW	9	Unmodified	_RTKGGRVLW_					0	0	0		ENST00000263754.4_1_3:20081618-20081714:+|nuORF	ENST00000263754.4_1_3:20081618-20081714:+|nuORF	ENST00000263754.4_1_3:20081618-20081714:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	357.9267883300781	3	358.217325	1071.63015	0.039072	1.3996E-05	-0.34749	-0.00012448	-0.30842	-0.00011048	358.2171715597416	24.869	0.65738	24.869	24.597	25.255	0					39	12	5	0	0	0	0.14438	1	7138	7138		59.052	36.394	1	41138000			45491	10323	33203	33470	44427	44427					0.09719666419550776
RTKGGRVLW	9	Unmodified	_RTKGGRVLW_					0	0	0		ENST00000263754.4_1_3:20081618-20081714:+|nuORF	ENST00000263754.4_1_3:20081618-20081714:+|nuORF	ENST00000263754.4_1_3:20081618-20081714:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	358.9132995605469	3	358.217325	1071.63015	-0.46722	-0.00016736	-0.060767	-2.1768E-05	-0.52798	-0.00018913	358.2172002221605	24.084	0.71348	24.728	24.499	25.212	0.64368					32	13	4	0	0	0	0.59859	1	7800	7800		14.957	6.2118	1	32806000			45492	10323	33203	33470	44428	44428					0.09719666419550776
RTKGSGAALP	10	Unmodified	_RTKGSGAALP_					0	0	0		ENST00000540866.2_1_12:123464712-123465360:+|nuORF;nc|ENSG00000182196|Q66PJ3-6|ARL6IP4;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4	ENST00000540866.2_1_12:123464712-123465360:+|nuORF	ENST00000540866.2_1_12:123464712-123465360:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	479.6769714355469	2	479.277441	956.540328	-0.44288	-0.00021226	0.18313	8.7771E-05	-0.25974	-0.00012449	479.27740587608423	109.27	5.8121	110.01	107.38	113.19	0.74683					289	113	4	0	0	0	0.71944	1	41040	41040		3.5965	3.5965	1	18458000			45493	13278	33204	33471	44429	44429					0.06031992020314192
RTKKMQRL	8	Unmodified	_RTKKMQRL_					0	0	0			REV__ENSG00000137801|ENST00000260356|THBS1	REV__ENSG00000137801|ENST00000260356|THBS1	MULTI-MSMS	A375_MHC_IP_R1	1	354.6027526855469	3	354.218449	1059.63352	-0.5079	-0.00017991	2.0637	0.00073101	1.5558	0.0005511	354.55380771901287	29.347	0.35444	29.347	29.201	29.555	0					9	6	2	0	0	0	0.77624	1	9231	9231		6.2058	3.3625	1	9037500	+	+	45494	15876	33205	33472	44430	44430					0.10608593201914118
RTKKVLKRY	9	Unmodified	_RTKKVLKRY_					0	0	0			REV__ENSG00000175756|ENST00000338338|AURKAIP1	REV__ENSG00000175756|ENST00000338338|AURKAIP1	MSMS	A375_MHC_IP_R2	2	596.787109375	2	596.387857	1190.76116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.336	1	30.035	29.535	30.535	0.69872								0	0	0	0.15486	1	10235	10235		4.3292	0.38484	1		+		45495	21364	33206	33473	44431	44431					0.1734105706759692
RTKMLSTSF	9	Unmodified	_RTKMLSTSF_					0	0	0			REV__ENST00000372398.5_1_9:132980151-132982049:+|nuORF	REV__ENST00000372398.5_1_9:132980151-132982049:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	358.29498291015625	3	357.526948	1069.55902	-0.47787	-0.00017085	-0.33564	-0.00012	-0.81351	-0.00029085	357.52676095199416	24.137	0.61151	24.781	24.499	25.11	0.64368					17	11	3	0	0	0	0.75164	1	7839	7839		9.544	1.5986	1	9074200	+		45496	24064	33207	33474	44432	44432					0.02701785599856521
RTKPPQLL	8	Unmodified	_RTKPPQLL_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	A375_MHC_IP_R1	1	477.2002868652344	2	476.800552	951.58655	-0.84919	-0.00040489	0.30724	0.00014649	-0.54195	-0.0002584	476.80063785970276	30.212	0.45375	30.212	29.999	30.453	0					22	8	3	0	0	0	0.60112	1	9554	9554		57.722	15.627	1	24451000			45497	3055	33208	33475	44433	44433					0.10882056922412175
RTKPPQLL	8	Unmodified	_RTKPPQLL_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	A375_MHC_IP_R2	2	477.199951171875	2	476.800552	951.58655	-1.3528	-0.00064502	0.33685	0.00016061	-1.016	-0.00048441	476.8007008079418	29.391	0.50526	30.089	29.83	30.335	0.69872					26	9	4	0	0	0	0.43205	1	10227	10227		70.332	30.382	1	22766000			45498	3055	33208	33475	44434	44434					0.10882056922412175
RTKPPQLLK	9	Unmodified	_RTKPPQLLK_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	A375_MHC_IP_R1	1	360.9486083984375	3	360.901114	1079.68151	0.16453	5.9377E-05	-0.43734	-0.00015784	-0.27281	-9.8459E-05	360.9009928898441	25.111	0.6603	25.111	24.953	25.613	0					21	12	2	0	0	0	0.26169	1	7258	7258		33.445	4.9504	1	12346000			45499	3055	33209	33476	44435	44435					0.1448599039358669
RTKPPQLLK	9	Unmodified	_RTKPPQLLK_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MSMS	A375_MHC_IP_R2	2	360.94854736328125	3	360.901114	1079.68151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.345	1	24.989	24.489	25.489	0.64368								0	0	0	0.1061	1	7982	7982		40.239	8.9709	1				45500	3055	33209	33476	44436	44436					0.1448599039358669
RTKQVLHTF	9	Unmodified	_RTKQVLHTF_					0	0	0		ENSG00000105255|ENST00000221856|FSD1	ENSG00000105255|ENST00000221856|FSD1	ENSG00000105255|ENST00000221856|FSD1	MULTI-SECPEP	A375_MHC_IP_R2	2	377.9551696777344	3	377.220735	1128.64038	-0.15685	-5.9166E-05	0.1652	6.2318E-05	0.0083542	3.1514E-06	377.2207680373845	22.484	0.66283	23.109	22.649	23.312	0.62501					19	12	2	0	0	0	0.5205	1	7172	7172		30.431	30.431	1	1659800			45501	2581	33210	33477	44437	44437					0.08120229354108233
RTKQVLHTF	9	Unmodified	_RTKQVLHTF_					0	0	0		ENSG00000105255|ENST00000221856|FSD1	ENSG00000105255|ENST00000221856|FSD1	ENSG00000105255|ENST00000221856|FSD1	MULTI-SECPEP	A375_MHC_IP_R2	2	377.29974365234375	3	377.220735	1128.64038	-0.14388	-5.4274E-05	0.84266	0.00031787	0.69878	0.00026359	377.2208538235718	20.94	1.2182	21.55	20.701	21.919	0.61029					49	23	3	0	0	0	0.18869	1	6462	6462		48.073	48.073	1	3022600			45502	2581	33210	33477	44438	44438					0.08120229354108233
RTKQVLHTF	9	Unmodified	_RTKQVLHTF_					0	0	0		ENSG00000105255|ENST00000221856|FSD1	ENSG00000105255|ENST00000221856|FSD1	ENSG00000105255|ENST00000221856|FSD1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	377.220735	1128.64038	0.040343	1.5218E-05	0.056974	2.1492E-05	0.097317	3.671E-05	377.22074542206144	23.508	0.66224	23.508	23.227	23.889	0	0.19939	-6.0984E-05	NaN	30.431	31	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25726000			45503	2581	33210	33477							0.08120229354108233
RTKRKISFVS	10	Unmodified	_RTKRKISFVS_					0	0	0		ENST00000527884.5_1_11:19259645-19261688:-|nuORF	ENST00000527884.5_1_11:19259645-19261688:-|nuORF	ENST00000527884.5_1_11:19259645-19261688:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	408.3187255859375	3	407.919056	1220.73534	-0.51702	-0.0002109	-0.14187	-5.7872E-05	-0.65889	-0.00026877	407.9189038319249	139.39	0.45656	139.39	139.22	139.67	0					17	8	3	0	0	0	0.72591	1	53580	53580		0.69767	0.07084	1	3437200			45504	13108	33211	33478	44439	44439					0.13380162825296793
RTKTEGQKL	9	Unmodified	_RTKTEGQKL_					0	0	0		KRT27|p.E363K|1|0.06|ENSG00000171446|chr17:40777618-40777618|C/T|missense_variant	KRT27|p.E363K|1|0.06|ENSG00000171446|chr17:40777618-40777618|C/T|missense_variant	KRT27|p.E363K|1|0.06|ENSG00000171446|chr17:40777618-40777618|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	531.2091674804688	2	530.809105	1059.60366	-0.34599	-0.00018365	0.051271	2.7215E-05	-0.29472	-0.00015644	530.8090108001028	126.01	1.1096	126.01	125.8	126.91	0					36	21	2	0	0	0	0.73415	1	48053	48053		3.9444	0	1	12042000			45505	14234	33212	33479	44440	44440					0.0762393273755606
RTKTEGQKL	9	Unmodified	_RTKTEGQKL_					0	0	0		KRT27|p.E363K|1|0.06|ENSG00000171446|chr17:40777618-40777618|C/T|missense_variant	KRT27|p.E363K|1|0.06|ENSG00000171446|chr17:40777618-40777618|C/T|missense_variant	KRT27|p.E363K|1|0.06|ENSG00000171446|chr17:40777618-40777618|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	530.809105	1059.60366	-0.34599	-0.00018365	0.051271	2.7215E-05	-0.29472	-0.00015644	530.8090108001028	126.01	1.1096	126.01	125.8	126.91	0	0	0	NaN	3.9444	36	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12042000			45506	14234	33212	33479							0.0762393273755606
RTKVTIRLF	9	Unmodified	_RTKVTIRLF_					0	0	0		ENST00000464515.1_1_7:41729250-41730808:-|nuORF;ENSG00000122641|ENST00000242208|INHBA	ENST00000464515.1_1_7:41729250-41730808:-|nuORF	ENST00000464515.1_1_7:41729250-41730808:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	378.9765319824219	3	378.576631	1132.70806	0.61656	0.00023341	-1.8552	-0.00070232	-1.2386	-0.00046891	378.5764385465078	48.123	0.506	48.123	47.819	48.325	0					21	9	3	0	0	0	0.06355	1	16933	16933		59.013	45.398	1	4835400			45507	3794	33213	33480	44441	44441					0.1470167928491719
RTKVTIRLF	9	Unmodified	_RTKVTIRLF_					0	0	0		ENST00000464515.1_1_7:41729250-41730808:-|nuORF;ENSG00000122641|ENST00000242208|INHBA	ENST00000464515.1_1_7:41729250-41730808:-|nuORF	ENST00000464515.1_1_7:41729250-41730808:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	378.9767761230469	3	378.576631	1132.70806	0.31127	0.00011784	0.085727	3.2454E-05	0.397	0.00015029	378.57660921751415	46.919	0.71158	47.68	47.462	48.174	0.76128					27	13	3	0	0	0	0.13192	1	17581	17581		44.945	26.572	1	3536500			45508	3794	33213	33480	44442	44442					0.1470167928491719
RTLAEIAKV	9	Unmodified	_RTLAEIAKV_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-SECPEP	A375_MHC_IP_R1	1	501.2106018066406	2	500.811116	999.60768	-0.27732	-0.00013889	1.1997	0.00060082	0.92237	0.00046193	500.8118304845691	40.64	1.115	40.64	40.355	41.47	0					50	19	4	0	0	0	0.030244	1	13920	13920		96.936	49.187	1	50189000			45509	5662	33214	33481	44443	44443					0.10786022231275183
RTLAIARNL	9	Unmodified	_RTLAIARNL_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-SECPEP	A375_MHC_IP_R1	1	514.7221069335938	2	514.322183	1026.62981	-0.5387	-0.00027706	0.2912	0.00014977	-0.24749	-0.00012729	514.3223444999531	38.552	1.2225	38.552	38.268	39.491	0					53	23	5	0	0	0	0.13199	1	13046	13046		53.317	13.359	1	169660000			45510	5711	33215	33482	44444	44444					0.11756246699678741
RTLAIARNL	9	Unmodified	_RTLAIARNL_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-SECPEP	A375_MHC_IP_R2	2	514.7219848632812	2	514.322183	1026.62981	-1.111	-0.00057143	0.45479	0.00023391	-0.65624	-0.00033752	514.3224118178832	37.478	1.0248	38.249	37.968	38.993	0.7709					43	19	4	0	0	0	0.23313	1	13674	13674		49.527	30.27	1	113540000			45511	5711	33215	33482	44445	44445					0.11756246699678741
RTLAKALVNP	10	Unmodified	_RTLAKALVNP_					0	0	0			REV__nc|ENSG00000165526|Q96CM3-2|RPUSD4	REV__nc|ENSG00000165526|Q96CM3-2|RPUSD4	MULTI-SECPEP	A375_MHC_IP_R1	1	361.96087646484375	3	361.560869	1081.66078	0.22032	7.9659E-05	-0.54443	-0.00019684	-0.32411	-0.00011718	361.56063538294586	28.516	0.6074	28.516	28.188	28.795	0					25	11	3	0	0	0	0.77698	1	8806	8806		11.631	5.4395	1	7374600	+		45512	20593	33216	33483	44446	44446					0.1232140001393418
RTLASVCALL	10	Unmodified	_RTLASVCALL_					0	0	0		ENSG00000130479|ENST00000324096|MAP1S;nc|ENSG00000130479|Q66K74-2|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	MULTI-MSMS	A375_MHC_IP_R2	2	523.7029418945312	2	523.804977	1045.5954	-0.51093	-0.00026763	0.22528	0.000118	-0.28565	-0.00014962	523.8050820046794	124.34	2.1207	124.67	124.34	126.46	0.32969					61	41	2	0	0	0	0.71866	1	48170	48170		3.9444	0	1	72225000			45513	4246	33217	33484	44447	44447					0.07442662496578123
RTLDGFKKF	9	Unmodified	_RTLDGFKKF_					0	0	0		ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	MULTI-SECPEP	A375_MHC_IP_R2	2	371.6136474609375	3	371.213469	1110.61858	0.37276	0.00013837	-0.43934	-0.00016309	-0.066586	-2.4718E-05	371.2133616822148	31.077	0.25414	31.796	31.669	31.923	0.71857					12	4	3	0	0	0	0.74169	1	10998	10998		5.0475	3.3052	1	3298700			45514	8679	33218	33485	44448	44448					0.0676942460556802
RTLEEEWT	8	Unmodified	_RTLEEEWT_					0	0	0			REV__ENSG00000006432|ENST00000554752|MAP3K9	REV__ENSG00000006432|ENST00000554752|MAP3K9	MULTI-MSMS	A375_MHC_IP_R2	2	532.6556396484375	2	532.256371	1062.49819	-0.75263	-0.00040059	-0.923	-0.00049127	-1.6756	-0.00089187	532.2558533601402	128.59	0.15132	128.83	128.76	128.91	0.23946					4	2	2	0	0	0	0.7256	1	50540	50540		26.884	7.6267	1	4349100	+		45515	16134	33219	33486	44449	44449					-0.030560281787074928
RTLEGQLRF	9	Unmodified	_RTLEGQLRF_					0	0	0			REV__ENSG00000187187|ENST00000347077|ZNF546	REV__ENSG00000187187|ENST00000347077|ZNF546	MULTI-MSMS	A375_MHC_IP_R2	2	374.2733459472656	3	373.88049	1118.61964	0.13691	5.1188E-05	-0.77593	-0.00029011	-0.63902	-0.00023892	373.880102305483	38.084	0.36108	38.858	38.585	38.946	0.77451					9	6	2	0	0	0	0.65637	1	13949	13949		10.899	4.1758	1	1589500	+		45516	22012	33220	33487	44450	44450					0.06507638974471774
RTLENPVNV	9	Unmodified	_RTLENPVNV_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MULTI-SECPEP	A375_MHC_IP_R1	1	521.6555786132812	2	521.288005	1040.56146	-0.40809	-0.00021273	-1.0844	-0.00056526	-1.4924	-0.00077799	521.287055777595	42.411	0.70885	42.411	41.828	42.537	0					21	13	3	0	0	0	0.75519	1	14652	14652		10.151	0	1	2866900			45517	14669	33221	33488	44451	44451					0.04279957329163153
RTLEPLAKKIF	11	Unmodified	_RTLEPLAKKIF_					0	0	0		ENSG00000218739|ENST00000402297|CEBPZOS;ENST00000470216.1_1_2:37426847-37428252:+|nuORF	ENSG00000218739|ENST00000402297|CEBPZOS	ENSG00000218739|ENST00000402297|CEBPZOS	MULTI-MSMS	A375_MHC_IP_R2	2	439.6746520996094	3	439.274729	1314.80236	-0.46807	-0.00020561	0.13028	5.7227E-05	-0.33779	-0.00014838	439.2748361357304	50.442	0.40621	51.196	51.006	51.412	0.75406					19	7	4	0	0	0	0.16804	1	18990	18990		58.398	44.863	1	3021000			45518	9656	33222	33489	44452	44452					0.15754773316393766
RTLEPLAKKIF	11	Unmodified	_RTLEPLAKKIF_					0	0	0		ENSG00000218739|ENST00000402297|CEBPZOS;ENST00000470216.1_1_2:37426847-37428252:+|nuORF	ENSG00000218739|ENST00000402297|CEBPZOS	ENSG00000218739|ENST00000402297|CEBPZOS	MULTI-MATCH	A375_MHC_IP_R1	1		3	439.274729	1314.80236	0.014236	6.2536E-06	0.062474	2.7443E-05	0.07671	3.3697E-05	439.27473062691104	51.489	0.45734	51.489	51.219	51.676	0	0.14647	-4.5084E-05	NaN	58.398	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2036000			45519	9656	33222	33489							0.15754773316393766
RTLERLRTV	9	Unmodified	_RTLERLRTV_					0	0	0			REV__ENST00000487498.1_1_3:123649947-123650302:-|nuORF	REV__ENST00000487498.1_1_3:123649947-123650302:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	382.30352783203125	3	381.903406	1142.68839	-0.38572	-0.00014731	0.16545	6.3187E-05	-0.22026	-8.412E-05	381.9034623506	20.077	0.81126	20.687	20.146	20.958	0.6103					20	15	2	0	0	0	0.76642	1	6207	6207		8.9762	1.8745	1	1933400	+		45520	21345	33223	33490	44453	44453					0.12275303274191174
RTLESKLVLF	10	Unmodified	_RTLESKLVLF_					0	0	0		ENST00000601476.1_1_19:42462288-42463399:-|nuORF;ENSG00000105404|ENST00000222008|RABAC1	ENST00000601476.1_1_19:42462288-42463399:-|nuORF	ENST00000601476.1_1_19:42462288-42463399:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	402.9797668457031	3	402.579929	1204.71796	-0.37591	-0.00015133	0.33434	0.0001346	-0.041568	-1.6734E-05	402.58001495963686	75.095	0.55846	75.095	74.704	75.262	0					21	10	3	0	0	0	0.2515	1	27344	27344		38.559	19.415	1	2072000			45521	2603	33224	33491	44454	44454					0.12378822499658781
RTLESKLVLF	10	Unmodified	_RTLESKLVLF_					0	0	0		ENST00000601476.1_1_19:42462288-42463399:-|nuORF;ENSG00000105404|ENST00000222008|RABAC1	ENST00000601476.1_1_19:42462288-42463399:-|nuORF	ENST00000601476.1_1_19:42462288-42463399:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	403.31451416015625	3	402.579929	1204.71796	0.0095769	3.8555E-06	0.048103	1.9366E-05	0.05768	2.3221E-05	402.57995843060684	74.05	0.55973	74.788	74.449	75.009	0.73752					18	10	2	0	0	0	0.57412	1	28079	28079		44.945	16.711	1	1979200			45522	2603	33224	33491	44455	44455					0.12378822499658781
RTLFNRFI	8	Unmodified	_RTLFNRFI_					0	0	0		PROK2|p.S119L|1|0.12|ENSG00000163421|chr3:71772758-71772758|G/A|missense_variant	PROK2|p.S119L|1|0.12|ENSG00000163421|chr3:71772758-71772758|G/A|missense_variant	PROK2|p.S119L|1|0.12|ENSG00000163421|chr3:71772758-71772758|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	355.45977783203125	3	356.210059	1065.60835	-0.073465	-2.6169E-05	0.47002	0.00016743	0.39656	0.00014126	356.21037480269774	47.693	0.20463	48.454	48.275	48.48	0.76128					6	3	2	0	0	0	0.972	1	17841	17841		1.1933	0.32897	1	962710			45523	15232	33225	33492	44456	44456					0.07816861670994513
RTLFRGRRRRE	11	Unmodified	_RTLFRGRRRRE_					0	0	0		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MULTI-MSMS	A375_MHC_IP_R1	1	502.033935546875	3	501.634424	1501.88144	-0.63214	-0.00031711	0.29158	0.00014626	-0.34057	-0.00017084	501.6344923098703	133.17	1.2753	133.17	132.33	133.61	0					103	24	5	0	0	0	0.73924	4	51132	51132;51301;51357;51489		0.094841	0.094841	1	104070000			45524	6487	33226	33493	44457;44458;44459;44460	44457					0.15057858113891598
RTLFRGRRRRE	11	Unmodified	_RTLFRGRRRRE_					0	0	0		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MULTI-MSMS	A375_MHC_IP_R1	1	502.0339660644531	3	501.634424	1501.88144	-0.64476	-0.00032343	0.053297	2.6736E-05	-0.59146	-0.0002967	501.63437381840885	133.99	2.0822	133.99	133.56	135.64	0					152	40	5	0	0	0	0.73924	2	51577	51577;51792		0.094841	0	1	182740000			45525	6487	33226	33493	44461;44462	44461					0.15057858113891598
RTLFRGRRRRE	11	Unmodified	_RTLFRGRRRRE_					0	0	0		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MULTI-MSMS	A375_MHC_IP_R1	1	752.3474731445312	2	751.947998	1501.88144	-0.77917	-0.00058589	0.092381	6.9466E-05	-0.68678	-0.00051643	751.9479164741376	133.99	1.8281	133.99	133.56	135.39	0					122	35	5	0	0	0	0.73924	2	51672	51672;52128		0	0	1	103160000			45526	6487	33226	33493	44463;44464	44463					0.15057858113891598
RTLFRGRRRRE	11	Unmodified	_RTLFRGRRRRE_					0	0	0		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MULTI-MSMS	A375_MHC_IP_R2	2	502.03411865234375	3	501.634424	1501.88144	-0.54468	-0.00027323	0.26925	0.00013507	-0.27542	-0.00013816	501.63447032144546	133.1	1.2709	133.27	132.43	133.7	0.16487					104	24	5	0	0	0	0.73924	5	52115	52115;52310;52348;52413;52491		0.094841	0.094841	1	96150000			45527	6487	33226	33493	44465;44466;44467;44468;44469	44465					0.15057858113891598
RTLFRGRRRRE	11	Unmodified	_RTLFRGRRRRE_					0	0	0		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MULTI-MSMS	A375_MHC_IP_R2	2	502.0343322753906	3	501.634424	1501.88144	-0.51629	-0.00025899	0.16174	8.1136E-05	-0.35455	-0.00017785	501.634409206312	133.93	2.5485	134.09	133.65	136.2	0.16487					176	49	5	0	0	0	0.73924	3	52566	52566;52784;52999		0.094841	0.094841	1	173190000			45528	6487	33226	33493	44470;44471;44472	44470					0.15057858113891598
RTLFRGRRRRE	11	Unmodified	_RTLFRGRRRRE_					0	0	0		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MULTI-MSMS	A375_MHC_IP_R2	2	752.3469848632812	2	751.947998	1501.88144	-0.78521	-0.00059043	0.28822	0.00021673	-0.49698	-0.00037371	751.9480449796484	133.92	2.3941	134.08	133.65	136.05	0.16487					129	46	5	0	0	0	0.73924	1	52885	52885		0	0	1	103670000			45529	6487	33226	33493	44473	44473					0.15057858113891598
RTLFRGRRRRE	11	Unmodified	_RTLFRGRRRRE_					0	0	0		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MULTI-MSMS	A375_MHC_IP_R2	2	502.0338439941406	3	501.634424	1501.88144	-0.41352	-0.00020744	-0.068197	-3.421E-05	-0.48172	-0.00024165	501.6343398861235	141.86	1.6375	141.89	140.74	142.38	0.030731					42	31	2	0	0	0	0.73924	1	55525	55525		0.094841	0	1	1286600			45530	6487	33226	33493	44474	44474					0.15057858113891598
RTLFRKYI	8	Unmodified	_RTLFRKYI_					0	0	0			REV__nc|ENSG00000065609|O60641-3|SNAP91	REV__nc|ENSG00000065609|O60641-3|SNAP91	MSMS	A375_MHC_IP_R1	1	365.938232421875	3	366.225709	1095.6553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.966	1	52.966	52.466	53.466	0								0	0	0	0.16876	1	18863	18863		8.7454	0.58988	1		+		45531	16502	33227	33494	44475	44475					0.11129721222141598
RTLGEIPTY	9	Unmodified	_RTLGEIPTY_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-SECPEP	A375_MHC_IP_R1	1	525.6845703125	2	525.284931	1048.55531	-0.38779	-0.0002037	0.18098	9.5066E-05	-0.20681	-0.00010863	525.2849902099138	56.779	0.66147	56.779	56.447	57.109	0					23	12	2	0	0	0	0.27114	1	20290	20290		53.404	7.7044	1	34496000			45532	7961	33228	33495	44476	44476					0.03297439097673305
RTLGEIPTY	9	Unmodified	_RTLGEIPTY_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	A375_MHC_IP_R2	2	525.684814453125	2	525.284931	1048.55531	-0.68132	-0.00035789	-0.1742	-9.1503E-05	-0.85552	-0.00044939	525.2848349893344	56.031	1.223	56.781	56.287	57.51	0.75015					65	23	4	0	0	0	0.11715	1	21108	21108		47.594	7.6447	1	27973000			45533	7961	33228	33495	44477	44477					0.03297439097673305
RTLHRLGEW	9	Unmodified	_RTLHRLGEW_					0	0	0		ENST00000425827.5_1_19:12273930-12280188:+|nuORF	ENST00000425827.5_1_19:12273930-12280188:+|nuORF	ENST00000425827.5_1_19:12273930-12280188:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	389.6058044433594	3	389.884235	1166.63087	-0.80828	-0.00031514	0.65434	0.00025512	-0.15393	-6.0017E-05	389.8845127113517	29.565	0.80789	30.264	29.88	30.688	0.69872					38	15	4	0	0	0	0.70902	1	10199	10199		6.1918	1.4759	1	7665600			45534	11794	33229	33496	44478	44478					0.054224610686105734
RTLIPRYF	8	Unmodified	_RTLIPRYF_					0	0	0		ENST00000508918.5_1_4:16504706-16675844:-|nuORF;nc|ENSG00000169744|O43679-2|LDB2;nc|ENSG00000169744|O43679-3|LDB2;ENSG00000169744|ENST00000304523|LDB2;ENST00000461873.5_1_10:103870189-103870671:-|nuORF;nc|ENSG00000198728|Q86U70-3|LDB1;nc|ENSG00000198728|Q86U70-2|LDB1;ENSG00000198728|ENST00000673968|LDB1	ENST00000508918.5_1_4:16504706-16675844:-|nuORF	ENST00000508918.5_1_4:16504706-16675844:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	533.6715698242188	2	533.313826	1064.6131	-0.67204	-0.00035841	0.17295	9.2239E-05	-0.49908	-0.00026617	533.3138950096884	64.267	0.96317	64.267	63.837	64.8	0					46	18	4	0	0	0	0.76996	1	23300	23300		36.127	21.545	1	18393000			45535	7434	33230	33497	44479	44479					0.08337745813742004
RTLIPRYF	8	Unmodified	_RTLIPRYF_					0	0	0		ENST00000508918.5_1_4:16504706-16675844:-|nuORF;nc|ENSG00000169744|O43679-2|LDB2;nc|ENSG00000169744|O43679-3|LDB2;ENSG00000169744|ENST00000304523|LDB2;ENST00000461873.5_1_10:103870189-103870671:-|nuORF;nc|ENSG00000198728|Q86U70-3|LDB1;nc|ENSG00000198728|Q86U70-2|LDB1;ENSG00000198728|ENST00000673968|LDB1	ENST00000508918.5_1_4:16504706-16675844:-|nuORF	ENST00000508918.5_1_4:16504706-16675844:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	356.2784729003906	3	355.87831	1064.6131	-0.16776	-5.9704E-05	-0.10971	-3.9043E-05	-0.27747	-9.8747E-05	355.87821753167424	63.258	0.60944	63.999	63.633	64.242	0.74088					28	11	3	0	0	0	0.7496	1	23963	23963		20.415	10.341	1	2761500			45536	7434	33230	33497	44480	44480					0.08337745813742004
RTLIPRYF	8	Unmodified	_RTLIPRYF_					0	0	0		ENST00000508918.5_1_4:16504706-16675844:-|nuORF;nc|ENSG00000169744|O43679-2|LDB2;nc|ENSG00000169744|O43679-3|LDB2;ENSG00000169744|ENST00000304523|LDB2;ENST00000461873.5_1_10:103870189-103870671:-|nuORF;nc|ENSG00000198728|Q86U70-3|LDB1;nc|ENSG00000198728|Q86U70-2|LDB1;ENSG00000198728|ENST00000673968|LDB1	ENST00000508918.5_1_4:16504706-16675844:-|nuORF	ENST00000508918.5_1_4:16504706-16675844:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	533.6713256835938	2	533.313826	1064.6131	-0.69196	-0.00036903	-0.11056	-5.8962E-05	-0.80252	-0.00042799	533.313709263833	63.233	0.9142	63.975	63.533	64.447	0.74208					44	17	4	0	0	0	0.64713	1	23962	23962		52.268	23.782	1	13757000			45537	7434	33230	33497	44481	44481					0.08337745813742004
RTLKEILRY	9	Unmodified	_RTLKEILRY_					0	0	0		ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B	ENSG00000179750|ENST00000333467|APOBEC3B	ENSG00000179750|ENST00000333467|APOBEC3B	MULTI-MSMS	A375_MHC_IP_R1	1	398.3118591308594	3	397.91179	1190.71354	-0.16142	-6.4232E-05	0.58749	0.00023377	0.42606	0.00016953	397.91200934816175	43.843	0.66201	43.843	43.451	44.113	0					25	12	3	0	0	0	0.17375	1	15251	15251		39.923	17.148	1	4893800			45538	8248	33231	33498	44482	44482					0.12581358076749893
RTLKEILRY	9	Unmodified	_RTLKEILRY_					0	0	0		ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B	ENSG00000179750|ENST00000333467|APOBEC3B	ENSG00000179750|ENST00000333467|APOBEC3B	MULTI-MSMS	A375_MHC_IP_R2	2	398.31158447265625	3	397.91179	1190.71354	-0.01297	-5.1609E-06	0.033564	1.3355E-05	0.020594	8.1945E-06	397.9116565471776	42.816	0.45622	43.588	43.369	43.826	0.7724					18	8	3	0	0	0	0.25658	1	15953	15953		33.821	16.379	1	4360100			45539	8248	33231	33498	44483	44483					0.12581358076749893
RTLLDEYRKR	10	Unmodified	_RTLLDEYRKR_					0	0	0			REV__ENSG00000130513|ENST00000252809|GDF15	REV__ENSG00000130513|ENST00000252809|GDF15	MSMS	A375_MHC_IP_R2	2	450.65985107421875	3	450.59312	1348.75753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131	1	131.21	130.71	131.71	0.2142								0	0	0	0.15547	1	51533	51533		3.0723	1.6171	1		+		45540	18544	33232	33499	44484	44484					0.097103425030582
RTLLEFLKRDK	11	Unmodified	_RTLLEFLKRDK_					0	0	0		ENSG00000111361|ENST00000424014|EIF2B1;ENST00000543940.1_1_12:124114818-124118191:-|nuORF;ENST00000452159.6_1_12:124114706-124118224:-|nuORF;nc|ENSG00000111361|Q14232-2|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	MULTI-MSMS	A375_MHC_IP_R1	1	474.01983642578125	3	473.620788	1417.84053	-0.8207	-0.0003887	-0.57789	-0.0002737	-1.3986	-0.0006624	473.62030246538745	143.03	0.45305	143.03	142.79	143.24	0					19	8	3	0	0	0	0.73924	1	54882	54882		0.094841	0	1	1384200			45541	2988	33233	33500	44485	44485					0.14832659231046819
RTLLEFLKRDK	11	Unmodified	_RTLLEFLKRDK_					0	0	0		ENSG00000111361|ENST00000424014|EIF2B1;ENST00000543940.1_1_12:124114818-124118191:-|nuORF;ENST00000452159.6_1_12:124114706-124118224:-|nuORF;nc|ENSG00000111361|Q14232-2|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	473.620788	1417.84053	-0.8207	-0.0003887	-0.57789	-0.0002737	-1.3986	-0.0006624	473.62030246538745	143.03	0.45305	143.03	142.79	143.24	0	-0.049344	0.00011498	NaN	0.094841	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1384200			45542	2988	33233	33500							0.14832659231046819
RTLLEFLKRDK	11	Unmodified	_RTLLEFLKRDK_					0	0	0		ENSG00000111361|ENST00000424014|EIF2B1;ENST00000543940.1_1_12:124114818-124118191:-|nuORF;ENST00000452159.6_1_12:124114706-124118224:-|nuORF;nc|ENSG00000111361|Q14232-2|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	473.620788	1417.84053	-0.3679	-0.00017425	-0.78205	-0.00037039	-1.15	-0.00054464	473.62025726054503	143.1	0.70773	143.13	142.64	143.34	0.030731	0.049344	-0.00017509	NaN	0.094841	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1438100			45543	2988	33233	33500							0.14832659231046819
RTLLKEPKL	9	Unmodified	_RTLLKEPKL_					0	0	0			REV__ENSG00000136881|ENST00000259407|BAAT	REV__ENSG00000136881|ENST00000259407|BAAT	MULTI-MSMS	A375_MHC_IP_R2	2	365.91729736328125	3	366.572886	1096.69683	0.098532	3.6119E-05	0.032433	1.1889E-05	0.13097	4.8008E-05	366.57289187640185	32.146	1.575	32.882	32.504	34.079	0.73692					88	30	5	0	0	0	0.12771	1	11339	11339		42.312	11.881	1	165200000	+		45544	18969	33234	33501	44486	44486					0.15234857190785078
RTLLKIRLS	9	Unmodified	_RTLLKIRLS_					0	0	0		ESPL1|p.M1842R|1|0.37|ENSG00000135476|chr12:53291694-53291694|T/G|missense_variant	ESPL1|p.M1842R|1|0.37|ENSG00000135476|chr12:53291694-53291694|T/G|missense_variant	ESPL1|p.M1842R|1|0.37|ENSG00000135476|chr12:53291694-53291694|T/G|missense_variant	MSMS	A375_MHC_IP_R2	2	367.2696533203125	3	367.248514	1098.72371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.591	1	36.355	35.855	36.855	0.76338								0	0	0	0.15306	1	12917	12917		16.566	7.0219	1				45545	13960	33235	33502	44487	44487					0.17829965801979597
RTLLLLAKAV	10	Unmodified	_RTLLLLAKAV_					0	0	0		ENST00000523568.1_7:102228019-102246337:-|nuORF;nc|ENSG00000105808|O43374-2|RASA4;ENSG00000170667|ENST00000465829|RASA4B;ENSG00000105808|ENST00000262940|RASA4;ENST00000488284.6_1_7:102129041-102135092:-|nuORF;ENST00000495352.5_1_7:102124102-102135092:-|nuORF;ENST00000522223.1_7:102223281-102234330:-|nuORF	ENST00000523568.1_7:102228019-102246337:-|nuORF	ENST00000523568.1_7:102228019-102246337:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	366.6451110839844	3	366.585015	1096.73321	-0.026289	-9.6373E-06	0.72338	0.00026518	0.69709	0.00025554	366.91961528523575	41.722	0.30755	41.722	41.521	41.828	0					8	5	2	0	0	0	0.71267	1	14423	14423		6.6235	0.43161	1	849380			45546	13044	33236	33503	44488	44488					0.18871734087497316
RTLLRKWLF	9	Unmodified	_RTLLRKWLF_					0	0	0		ENST00000284240.9_1_11:119288971-119289283:-|nuORF	ENST00000284240.9_1_11:119288971-119289283:-|nuORF	ENST00000284240.9_1_11:119288971-119289283:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	411.3235778808594	3	411.592392	1231.75535	-0.22308	-9.1819E-05	0.071269	2.9334E-05	-0.15181	-6.2485E-05	411.5924582632321	33.172	0.35699	33.924	33.789	34.146	0.75225					9	6	2	0	0	0	0.80713	1	11895	11895		2.086	0	1	2164700			45547	10441	33237	33504	44489	44489					0.1487395855590421
RTLPGDRFF	9	Unmodified	_RTLPGDRFF_					0	0	0		nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2;nc|ENSG00000102100|P78381-3|SLC35A2	nc|ENSG00000102100|P78381-2|SLC35A2	nc|ENSG00000102100|P78381-2|SLC35A2	MULTI-MSMS	A375_MHC_IP_R1	1	370.6014404296875	3	370.201452	1107.58253	0.43221	0.00016	0.24497	9.0687E-05	0.67717	0.00025069	370.2015023704896	54.395	0.75893	54.395	54.063	54.822	0					36	14	3	0	0	0	0.60982	1	19381	19381		14.218	11.483	1	19768000			45548	2358	33238	33505	44490	44490					0.03303967428701071
RTLPGDRFF	9	Unmodified	_RTLPGDRFF_					0	0	0		nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2;nc|ENSG00000102100|P78381-3|SLC35A2	nc|ENSG00000102100|P78381-2|SLC35A2	nc|ENSG00000102100|P78381-2|SLC35A2	MULTI-MSMS	A375_MHC_IP_R1	1	555.3091430664062	2	554.79854	1107.58253	-0.42803	-0.00023747	-0.069262	-3.8426E-05	-0.49729	-0.0002759	554.7984967387459	54.391	0.80999	54.391	54.063	54.873	0					40	15	4	0	0	0	0.54799	1	19529	19529		17.443	3.5366	1	23356000			45549	2358	33238	33505	44491	44491					0.03303967428701071
RTLPGDRFF	9	Unmodified	_RTLPGDRFF_					0	0	0		nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2;nc|ENSG00000102100|P78381-3|SLC35A2	nc|ENSG00000102100|P78381-2|SLC35A2	nc|ENSG00000102100|P78381-2|SLC35A2	MULTI-MSMS	A375_MHC_IP_R2	2	370.6017150878906	3	370.201452	1107.58253	-0.2045	-7.5705E-05	0.25598	9.4764E-05	0.051481	1.9058E-05	370.2015199363528	53.474	0.76781	54.225	53.893	54.661	0.75105					40	14	4	0	0	0	0.32889	1	20149	20149		21.799	10.305	1	24255000			45550	2358	33238	33505	44492	44492					0.03303967428701071
RTLPGDRFF	9	Unmodified	_RTLPGDRFF_					0	0	0		nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2;nc|ENSG00000102100|P78381-3|SLC35A2	nc|ENSG00000102100|P78381-2|SLC35A2	nc|ENSG00000102100|P78381-2|SLC35A2	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1983642578125	2	554.79854	1107.58253	-1.3084	-0.00072591	0.34016	0.00018872	-0.96827	-0.00053719	554.7986752879708	53.477	0.6662	54.228	53.995	54.661	0.75105					33	12	3	0	0	0	0.40377	1	20163	20163		34.932	15.675	1	23239000			45551	2358	33238	33505	44493	44493					0.03303967428701071
RTLPKILDK	9	Unmodified	_RTLPKILDK_					0	0	0		nc|ENSG00000273540|Q96MI9|AGBL1;ENSG00000273540|ENST00000614907|AGBL1	nc|ENSG00000273540|Q96MI9|AGBL1	nc|ENSG00000273540|Q96MI9|AGBL1	MULTI-MSMS	A375_MHC_IP_R1	1	362.30084228515625	3	361.901003	1082.68118	0.0045585	1.6497E-06	-0.41227	-0.0001492	-0.40771	-0.00014755	361.9008287284228	27.084	0.75556	27.084	26.878	27.634	0					29	14	3	0	0	0	0.35164	1	8154	8154		27.088	0	1	12495000			45552	9998	33239	33506	44494	44494					0.143145706737414
RTLPRRYII	9	Unmodified	_RTLPRRYII_					0	0	0		ENSG00000197208|ENST00000200652|SLC22A4	ENSG00000197208|ENST00000200652|SLC22A4	ENSG00000197208|ENST00000200652|SLC22A4	MULTI-MSMS	A375_MHC_IP_R1	1	396.9837951660156	3	396.583897	1186.72986	-0.10796	-4.2816E-05	0.16804	6.6644E-05	0.060082	2.3828E-05	396.58392541212424	34.094	0.60881	34.094	33.848	34.456	0					27	11	3	0	0	0	0.11638	1	11184	11184		47.732	23.942	1	8963600			45553	9130	33240	33507	44495	44495					0.143964840335002
RTLPRRYII	9	Unmodified	_RTLPRRYII_					0	0	0		ENSG00000197208|ENST00000200652|SLC22A4	ENSG00000197208|ENST00000200652|SLC22A4	ENSG00000197208|ENST00000200652|SLC22A4	MULTI-MSMS	A375_MHC_IP_R2	2	396.9837646484375	3	396.583897	1186.72986	-0.2615	-0.0001037	-0.0801	-3.1766E-05	-0.3416	-0.00013547	396.58389988548043	33.053	0.81435	33.803	33.531	34.346	0.74963					30	15	3	0	0	0	0.26911	1	11803	11803		32.898	17.649	1	9445300			45554	9130	33240	33507	44496	44496					0.143964840335002
RTLPTPRTL	9	Unmodified	_RTLPTPRTL_					0	0	0		nc|ENSG00000088766|Q9UJA2-2|CRLS1;ENSG00000088766|ENST00000378863|CRLS1	nc|ENSG00000088766|Q9UJA2-2|CRLS1	nc|ENSG00000088766|Q9UJA2-2|CRLS1	MULTI-SECPEP	A375_MHC_IP_R2	2	528.220947265625	2	527.822015	1053.62948	-0.78125	-0.00041236	-0.151	-7.9701E-05	-0.93225	-0.00049206	527.8219063903841	33.317	0.96531	34.069	33.584	34.55	0.75225					52	18	4	0	0	0	0.601	1	11831	11831		26.021	8.9078	1	52614000			45555	1895	33241	33508	44497	44497					0.10480826979846825
RTLPVDFHI	9	Unmodified	_RTLPVDFHI_					0	0	0		nc|ENSG00000100395|Q969R5-2|L3MBTL2;nc|ENSG00000100395|Q969R5-3|L3MBTL2;ENST00000466589.5_1_22:41601366-41623356:+|nuORF;ENSG00000100395|ENST00000216237|L3MBTL2;ENST00000479978.5_1_22:41615341-41623356:+|nuORF	nc|ENSG00000100395|Q969R5-2|L3MBTL2	nc|ENSG00000100395|Q969R5-2|L3MBTL2	MULTI-SECPEP	A375_MHC_IP_R1	1	549.7086181640625	2	549.308741	1096.60293	-0.49538	-0.00027211	0.85443	0.00046935	0.35906	0.00019723	549.3093278092288	73.005	0.81129	73.005	72.728	73.539	0					21	15	2	0	0	0	0.13208	1	26587	26587		57.722	41.573	1	4020100			45556	2173	33242	33509	44498	44498					0.058491380885243416
RTLPVDFHI	9	Unmodified	_RTLPVDFHI_					0	0	0		nc|ENSG00000100395|Q969R5-2|L3MBTL2;nc|ENSG00000100395|Q969R5-3|L3MBTL2;ENST00000466589.5_1_22:41601366-41623356:+|nuORF;ENSG00000100395|ENST00000216237|L3MBTL2;ENST00000479978.5_1_22:41615341-41623356:+|nuORF	nc|ENSG00000100395|Q969R5-2|L3MBTL2	nc|ENSG00000100395|Q969R5-2|L3MBTL2	MULTI-MSMS	A375_MHC_IP_R2	2	549.7081909179688	2	549.308741	1096.60293	-1.0098	-0.00055471	0.84378	0.00046349	-0.16605	-9.1211E-05	549.3091467780076	72.06	0.70909	72.795	72.516	73.225	0.73421					19	13	2	0	0	0	0.41856	1	27349	27349		31.268	9.5217	1	3629500			45557	2173	33242	33509	44499	44499					0.058491380885243416
RTLQPNGLLF	10	Unmodified	_RTLQPNGLLF_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-SECPEP	A375_MHC_IP_R1	1	580.2347412109375	2	579.835123	1157.65569	-0.31756	-0.00018413	-0.76224	-0.00044198	-1.0798	-0.00062611	579.8348449175471	87.029	0.71097	87.029	86.679	87.39	0					20	13	2	0	0	0	0.27758	1	31909	31909		61.602	21.645	1	4687800			45558	3109	33243	33510	44500	44500					0.08317096151336045
RTLQPNGLLFY	11	Unmodified	_RTLQPNGLLFY_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-MSMS	A375_MHC_IP_R1	1	661.7666625976562	2	661.366787	1320.71902	-0.4931	-0.00032612	0.75013	0.00049611	0.25704	0.00017	661.3673176217181	96.332	0.45991	96.332	96.069	96.529	0					17	8	3	0	0	0	0.33293	1	35399	35399		53.317	21.2	1	2752700			45559	3109	33244	33511	44501	44501					0.07149036868577241
RTLQSKDIY	9	Unmodified	_RTLQSKDIY_					0	0	0			REV__ENST00000488149.5_1_3:183027559-183118319:-|nuORF	REV__ENST00000488149.5_1_3:183027559-183118319:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	562.7085571289062	2	562.308938	1122.60332	-1.1016	-0.00061944	1.0232	0.00057534	-0.07842	-4.4096E-05	562.3092251749277	33.723	0.6571	34.475	34.247	34.904	0.75225					24	12	3	0	0	0	0.54812	1	12115	12115		31.268	2.1868	1	9945200	+		45560	16397	33245	33512	44502	44502					0.04692513017721467
RTLQSKDIY	9	Unmodified	_RTLQSKDIY_					0	0	0			REV__ENST00000488149.5_1_3:183027559-183118319:-|nuORF	REV__ENST00000488149.5_1_3:183027559-183118319:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	562.308938	1122.60332	-0.48868	-0.00027479	0.3089	0.0001737	-0.17979	-0.0001011	562.3090064169454	34.575	0.45623	34.575	34.303	34.759	0	0.050065	-7.3158E-05	NaN	31.268	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9892100	+		45561	16397	33245	33512							0.04692513017721467
RTLQSKVILK	10	Unmodified	_RTLQSKVILK_					0	0	0		ENST00000469070.1_1_3:119814129-119817604:+|nuORF	ENST00000469070.1_1_3:119814129-119817604:+|nuORF	ENST00000469070.1_1_3:119814129-119817604:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	396.3274230957031	3	395.92744	1184.76049	-0.20509	-8.12E-05	0.25638	0.00010151	0.051295	2.0309E-05	395.92750155601794	19.384	0.69068	19.384	19.238	19.928	0					31	13	3	0	0	0	0.71175	1	4808	4808		7.0371	3.1912	1	8806300			45562	12310	33246	33513	44503	44503					0.17550217627899656
RTLRDIETF	9	Unmodified	_RTLRDIETF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	A375_MHC_IP_R1	1	384.6121520996094	3	384.212017	1149.61422	0.67904	0.0002609	-0.40957	-0.00015736	0.26947	0.00010353	384.21192302312113	48.451	2.5923	48.451	48.071	50.663	0					147	50	6	0	0	0	0.12591	4	17022	17022;17063;17257;17477		46.022	28.58	1	419690000			45563	6498	33247	33514	44504;44505;44506;44507	44504					0.04539915391978866
RTLRDIETF	9	Unmodified	_RTLRDIETF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-SECPEP	A375_MHC_IP_R1	1	576.1650390625	2	575.814387	1149.61422	0.21106	0.00012153	-0.366	-0.00021075	-0.15494	-8.9218E-05	575.8141793871642	48.452	1.4179	48.452	48.122	49.54	0					86	27	5	0	0	0	0.062502	1	17138	17138		83.429	50.643	1	187130000			45564	6498	33247	33514	44508	44508					0.04539915391978866
RTLRDIETF	9	Unmodified	_RTLRDIETF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	A375_MHC_IP_R2	2	384.6119384765625	3	384.212017	1149.61422	0.025328	9.7312E-06	-0.11066	-4.2515E-05	-0.085328	-3.2784E-05	384.2120105873357	47.608	2.4311	48.369	47.97	50.402	0.76128					145	47	6	0	0	0	0.12591	4	17788	17743;17788;18015;18239		46.022	24.87	1	423700000			45565	6498	33247	33514	44509;44510;44511;44512	44510					0.04539915391978866
RTLRDIETF	9	Unmodified	_RTLRDIETF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-SECPEP	A375_MHC_IP_R2	2	576.214111328125	2	575.814387	1149.61422	-0.042182	-2.4289E-05	-0.5072	-0.00029205	-0.54938	-0.00031634	575.8141225718597	47.591	1.6719	48.352	48.022	49.694	0.76128					84	32	5	0	0	0	0.14273	1	17792	17792		68.76	32.254	1	173260000			45566	6498	33247	33514	44513	44513					0.04539915391978866
RTLRDIETFY	10	Unmodified	_RTLRDIETFY_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	A375_MHC_IP_R1	1	438.9665222167969	3	438.56646	1312.67755	-0.04606	-2.02E-05	0.20795	9.1201E-05	0.16189	7.1001E-05	438.56655157183053	63.041	1.0753	63.041	62.66	63.735	0					66	20	5	0	0	0	0.44241	2	22705	22705;22924		31.636	17.418	1	61746000			45567	6498	33248	33515	44514;44515	44514					0.033718561092200616
RTLRDIETFY	10	Unmodified	_RTLRDIETFY_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	A375_MHC_IP_R1	1	657.74560546875	2	657.346052	1312.67755	-0.38773	-0.00025487	0.37691	0.00024776	-0.010815	-7.1093E-06	657.3463393323962	63.04	0.81767	63.04	62.66	63.477	0					43	15	4	0	0	0	0.31188	1	22733	22733		51.488	31.073	1	16846000			45568	6498	33248	33515	44516	44516					0.033718561092200616
RTLRDIETFY	10	Unmodified	_RTLRDIETFY_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	A375_MHC_IP_R2	2	438.96600341796875	3	438.56646	1312.67755	-0.468	-0.00020525	-0.012082	-5.2987E-06	-0.48008	-0.00021055	438.56644407461454	62.209	1.5198	62.952	62.622	64.142	0.74263					70	29	5	0	0	0	0.33943	1	23532	23532		37.771	19.05	1	60198000			45569	6498	33248	33515	44517	44517					0.033718561092200616
RTLRDIETFY	10	Unmodified	_RTLRDIETFY_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-SECPEP	A375_MHC_IP_R2	2	657.7450561523438	2	657.346052	1312.67755	-1.0655	-0.00070041	0.22312	0.00014667	-0.84239	-0.00055374	657.3461950981257	62.24	0.55832	62.982	62.724	63.282	0.74263					20	10	2	0	0	0	0.24526	1	23562	23562		67.081	48.934	1	11731000			45570	6498	33248	33515	44518	44518					0.033718561092200616
RTLSDINKY	9	Unmodified	_RTLSDINKY_					0	0	0			REV__GCSAML|p.E90K|2|0.25|ENSG00000169224|chr1:247574242-247574242|G/A|missense_variant	REV__GCSAML|p.E90K|2|0.25|ENSG00000169224|chr1:247574242-247574242|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	370.9364013671875	3	370.536501	1108.58767	0.22678	8.403E-05	-0.2103	-7.7925E-05	0.016474	6.1043E-06	370.53641421523514	46.564	0.504	46.564	46.295	46.799	0					19	9	3	0	0	0	0.7686	1	16381	16381		0.86438	0	1	2320900	+		45571	26676	33249	33516	44519	44519					0.03772226500677789
RTLVEHSGRVF	11	Unmodified	_RTLVEHSGRVF_					0	0	0		nc|ENSG00000072803|Q9UKB1-3|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC	nc|ENSG00000072803|Q9UKB1-3|FBXW11	nc|ENSG00000072803|Q9UKB1-3|FBXW11	MULTI-SECPEP	A375_MHC_IP_R1	1	434.6421813964844	3	434.242199	1299.70477	-0.24743	-0.00010745	0.014575	6.3291E-06	-0.23286	-0.00010112	434.2422429693889	28.82	0.30188	28.82	28.643	28.945	0					9	5	2	0	0	0	0.97843	1	8965	8965		21.666	8.8101	1	3832800			45572	1548	33250	33517	44520	44520					0.0669038444027592
RTLVPNFTF	9	Unmodified	_RTLVPNFTF_					0	0	0		ENSG00000166507|ENST00000309979|NDST2;ENST00000463410.1_1_10:75566827-75567228:-|nuORF;nc|ENSG00000166507|P52849-2|NDST2	ENSG00000166507|ENST00000309979|NDST2	ENSG00000166507|ENST00000309979|NDST2	MULTI-MSMS	A375_MHC_IP_R2	2	365.937744140625	3	365.537953	1093.59203	-0.29226	-0.00010683	0.23309	8.5202E-05	-0.059178	-2.1632E-05	365.5380069855657	52.053	0.55952	52.806	52.524	53.083	0.75225					16	10	2	0	0	0	0.74114	1	19650	19650		3.3196	0.58445	1	1638800			45573	7083	33251	33518	44521	44521					0.04897735714234841
RTLVPNFTF	9	Unmodified	_RTLVPNFTF_					0	0	0		ENSG00000166507|ENST00000309979|NDST2;ENST00000463410.1_1_10:75566827-75567228:-|nuORF;nc|ENSG00000166507|P52849-2|NDST2	ENSG00000166507|ENST00000309979|NDST2	ENSG00000166507|ENST00000309979|NDST2	MULTI-MATCH	A375_MHC_IP_R1	1		3	365.537953	1093.59203	0.0499	1.824E-05	0.53336	0.00019496	0.58326	0.0002132	365.53807451397626	52.872	0.35421	52.872	52.643	52.997	0	0.032973	0.00019831	NaN	3.3196	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1809200			45574	7083	33251	33518							0.04897735714234841
RTLYEFND	8	Unmodified	_RTLYEFND_					0	0	0			REV__ENSG00000148408|ENST00000371372|CACNA1B;REV__nc|ENSG00000141837|O00555-5|CACNA1A;REV__nc|ENSG00000198216|Q15878-2|CACNA1E	REV__nc|ENSG00000141837|O00555-5|CACNA1A	MULTI-SECPEP	A375_MHC_IP_R2	2	352.6167907714844	3	353.169818	1056.48762	-0.61394	-0.00021683	0.936	0.00033057	0.32206	0.00011374	353.1703120114823	33.497	0.40657	34.249	33.992	34.399	0.75225					11	7	2	0	0	0	0.972	1	11912	11912		1.1933	1.1933	1	852680	+		45575	19286;19630;22353	33252	33519	44522	44522					-0.03836010833151704
RTMEIESTF	9	Oxidation (M)	_RTM(Oxidation (M))EIESTF_		RTM(1)EIESTF		RTM(70)EIESTF	0	0	1		ENSG00000117419|ENST00000372257|ERI3;nc|ENSG00000117419|O43414-2|ERI3	ENSG00000117419|ENST00000372257|ERI3	ENSG00000117419|ENST00000372257|ERI3	MULTI-MSMS	A375_MHC_IP_R1	1	565.663330078125	2	565.263339	1128.51212	-0.51473	-0.00029096	-0.1957	-0.00011062	-0.71043	-0.00040158	565.2632182174165	39.518	0.81159	39.518	39.085	39.896	0					35	15	4	0	0	0	0.035419	1	13498	13498		70.332	7.7593	1	18583000			45576	3483	33253	33520	44523	44523		178			-0.04699118741928032
RTMEIESTF	9	Unmodified	_RTMEIESTF_					0	0	0		ENSG00000117419|ENST00000372257|ERI3;nc|ENSG00000117419|O43414-2|ERI3	ENSG00000117419|ENST00000372257|ERI3	ENSG00000117419|ENST00000372257|ERI3	MULTI-MSMS	A375_MHC_IP_R1	1	557.6656494140625	2	557.265881	1112.51721	-0.43693	-0.00024349	0.10575	5.893E-05	-0.33118	-0.00018456	557.26598179259	56.681	0.6608	56.681	56.347	57.007	0					37	12	4	0	0	0	0.024574	1	20281	20281		79.596	7.674	1	13295000			45577	3483	33253	33521	44524	44524					-0.03454814879319201
RTMEIESTF	9	Unmodified	_RTMEIESTF_					0	0	0		ENSG00000117419|ENST00000372257|ERI3;nc|ENSG00000117419|O43414-2|ERI3	ENSG00000117419|ENST00000372257|ERI3	ENSG00000117419|ENST00000372257|ERI3	MULTI-MSMS	A375_MHC_IP_R2	2	557.6649169921875	2	557.265881	1112.51721	-0.91336	-0.00050898	0.10631	5.9246E-05	-0.80704	-0.00044974	557.2660855618532	55.893	0.71182	56.643	56.237	56.948	0.75015					35	13	4	0	0	0	0.050868	2	21081	21081;21156		63.961	7.7835	1	14235000			45578	3483	33253	33521	44525;44526	44525					-0.03454814879319201
RTMNSLKQL	9	Unmodified	_RTMNSLKQL_					0	0	0		ENSG00000135372|ENST00000257829|NAT10;nc|ENSG00000135372|Q9H0A0-2|NAT10	ENSG00000135372|ENST00000257829|NAT10	ENSG00000135372|ENST00000257829|NAT10	MULTI-MSMS	A375_MHC_IP_R1	1	364.1471862792969	3	364.206098	1089.59646	-0.13403	-4.8813E-05	3.1347	0.0011417	3.0006	0.0010928	364.2081738925837	29.953	1.3117	29.953	29.848	31.16	0					32	25	2	0	0	0	0.46038	1	9511	9511		15.248	3.0737	1	6549500			45579	4676	33254	33522	44527	44527					0.055248768654792
RTMPIYPTY	9	Unmodified	_RTMPIYPTY_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	A375_MHC_IP_R1	1	571.66845703125	2	571.289159	1140.56377	-0.27377	-0.0001564	0.4416	0.00025228	0.16783	9.5881E-05	571.2893143348468	60.286	0.60952	60.286	59.905	60.514	0					18	11	2	0	0	0	0.41731	1	21725	21725		38.176	38.176	1	4552900			45580	3882	33255	33523	44528	44528					-0.0008933025735586853
RTMPIYPTY	9	Unmodified	_RTMPIYPTY_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MATCH	A375_MHC_IP_R2	2		2	571.289159	1140.56377	-0.68368	-0.00039058	0.32808	0.00018743	-0.3556	-0.00020315	571.2891698207795	59.478	0.55494	60.225	59.946	60.501	0.74714	-0.03047	-7.1162E-05	NaN	38.176	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6252800			45581	3882	33255	33523							-0.0008933025735586853
RTMQEIERY	9	Oxidation (M)	_RTM(Oxidation (M))QEIERY_		RTM(1)QEIERY		RTM(53)QEIERY	0	0	1		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-MSMS	A375_MHC_IP_R1	1	415.4366455078125	3	414.536283	1240.58702	0.63051	0.00026137	-1.9316	-0.00080071	-1.3011	-0.00053934	414.5354178261579	21.757	1.3205	21.757	21.403	22.723	0					54	25	4	0	0	0	0.0844	1	5792	5792		53.47	36.027	1	11628000			45582	5379	33256	33524	44529	44529		289			-0.02364936210688029
RTMQEIERY	9	Oxidation (M)	_RTM(Oxidation (M))QEIERY_		RTM(1)QEIERY		RTM(46)QEIERY	0	0	1		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-SECPEP	A375_MHC_IP_R1	1	414.9595031738281	3	414.536283	1240.58702	0.20128	8.3437E-05	-0.22683	-9.403E-05	-0.025553	-1.0592E-05	414.53617895425805	19.495	0.35642	19.495	19.368	19.725	0					10	6	2	0	0	0	0.30942	1	4853	4853		46.475	29.033	1	15246000			45583	5379	33256	33524	44530	44530		289			-0.02364936210688029
RTMQEIERY	9	Oxidation (M)	_RTM(Oxidation (M))QEIERY_		RTM(1)QEIERY		RTM(61)QEIERY	0	0	1		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-MSMS	A375_MHC_IP_R2	2	414.9360656738281	3	414.536283	1240.58702	-0.33349	-0.00013824	-0.99487	-0.00041241	-1.3284	-0.00055065	414.5358318384742	21.284	1.0654	21.903	21.321	22.387	0.61932					56	20	3	0	0	0	0.058715	1	6691	6691		60.899	43.457	1	18044000			45584	5379	33256	33524	44531	44531		289			-0.02364936210688029
RTMQEIERY	9	Unmodified	_RTMQEIERY_					0	0	0		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-MSMS	A375_MHC_IP_R1	1	613.7031860351562	2	613.303329	1224.59211	-0.54393	-0.00033359	-0.28047	-0.00017201	-0.8244	-0.00050561	613.3033012318272	26.985	0.653	26.985	26.728	27.381	0					29	12	4	0	0	0	0.085252	1	8110	8110		53.317	22.048	1	13366000			45585	5379	33256	33525	44532	44532					-0.011206323480564606
RTMQEIERY	9	Unmodified	_RTMQEIERY_					0	0	0		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-SECPEP	A375_MHC_IP_R1	1	409.60455322265625	3	409.204645	1224.59211	-0.27984	-0.00011451	-0.063067	-2.5807E-05	-0.3429	-0.00014032	409.2046147290104	27.002	0.653	27.002	26.728	27.381	0					25	12	4	0	0	0	0.01083	1	8113	8113		112.04	61.911	1	14475000			45586	5379	33256	33525	44533	44533					-0.011206323480564606
RTMQEIERY	9	Unmodified	_RTMQEIERY_					0	0	0		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-MSMS	A375_MHC_IP_R2	2	409.60455322265625	3	409.204645	1224.59211	-0.37603	-0.00015387	-0.42411	-0.00017355	-0.80014	-0.00032742	409.2045054351245	26.34	0.76247	27	26.703	27.466	0.65992					33	14	4	0	0	0	0.0083527	1	8895	8895		108.26	54.792	1	10674000			45587	5379	33256	33525	44534	44534					-0.011206323480564606
RTMQEIERY	9	Unmodified	_RTMQEIERY_					0	0	0		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-SECPEP	A375_MHC_IP_R2	2	613.70263671875	2	613.303329	1224.59211	-0.95259	-0.00058423	-0.14067	-8.6274E-05	-1.0933	-0.0006705	613.3032242245312	26.323	0.60901	26.983	26.805	27.414	0.65992					23	11	4	0	0	0	0.29257	1	8891	8891		53.317	18.915	1	11412000			45588	5379	33256	33525	44535	44535					-0.011206323480564606
RTNAIKQTF	9	Unmodified	_RTNAIKQTF_					0	0	0		nc|ENSG00000085978|Q676U5-2|ATG16L1;ENSG00000085978|ENST00000392017|ATG16L1;nc|ENSG00000085978|Q676U5-4|ATG16L1;nc|ENSG00000085978|Q676U5-5|ATG16L1;ENST00000479942.5_1_2:234198871-234202993:+|nuORF	nc|ENSG00000085978|Q676U5-2|ATG16L1;ENST00000479942.5_1_2:234198871-234202993:+|nuORF	nc|ENSG00000085978|Q676U5-2|ATG16L1	MULTI-MSMS	A375_MHC_IP_R1	1	540.203369140625	2	539.803823	1077.59309	-0.82179	-0.0004436	0.1662	8.9718E-05	-0.65558	-0.00035389	539.8038701287209	23.355	0.35764	23.355	23.176	23.533	0					18	6	4	0	0	0	0.010042	1	6382	6382		124.95	28.842	1	36827000			45589	1822;12487	33257	33526	44536	44536					0.057399500831252226
RTNAIKQTF	9	Unmodified	_RTNAIKQTF_					0	0	0		nc|ENSG00000085978|Q676U5-2|ATG16L1;ENSG00000085978|ENST00000392017|ATG16L1;nc|ENSG00000085978|Q676U5-4|ATG16L1;nc|ENSG00000085978|Q676U5-5|ATG16L1;ENST00000479942.5_1_2:234198871-234202993:+|nuORF	nc|ENSG00000085978|Q676U5-2|ATG16L1;ENST00000479942.5_1_2:234198871-234202993:+|nuORF	nc|ENSG00000085978|Q676U5-2|ATG16L1	MULTI-SECPEP	A375_MHC_IP_R1	1	360.6048583984375	3	360.204974	1077.59309	-0.067264	-2.4229E-05	-0.65124	-0.00023458	-0.7185	-0.00025881	360.204889026139	23.371	0.71326	23.371	23.176	23.889	0					22	13	3	0	0	0	0.040539	1	6399	6399		68.484	35.586	1	17798000			45590	1822;12487	33257	33526	44537	44537					0.057399500831252226
RTNAIKQTF	9	Unmodified	_RTNAIKQTF_					0	0	0		nc|ENSG00000085978|Q676U5-2|ATG16L1;ENSG00000085978|ENST00000392017|ATG16L1;nc|ENSG00000085978|Q676U5-4|ATG16L1;nc|ENSG00000085978|Q676U5-5|ATG16L1;ENST00000479942.5_1_2:234198871-234202993:+|nuORF	nc|ENSG00000085978|Q676U5-2|ATG16L1;ENST00000479942.5_1_2:234198871-234202993:+|nuORF	nc|ENSG00000085978|Q676U5-2|ATG16L1	MULTI-MSMS	A375_MHC_IP_R2	2	360.6053161621094	3	360.204974	1077.59309	-0.53002	-0.00019092	0.73618	0.00026518	0.20616	7.4258E-05	360.20505873959127	20.881	0.91136	21.491	21.109	22.021	0.61029					42	17	5	0	0	0	0.52905	1	6449	6449		13.519	4.1355	1	3922900			45591	1822;12487	33257	33526	44538	44538					0.057399500831252226
RTNAIKQTF	9	Unmodified	_RTNAIKQTF_					0	0	0		nc|ENSG00000085978|Q676U5-2|ATG16L1;ENSG00000085978|ENST00000392017|ATG16L1;nc|ENSG00000085978|Q676U5-4|ATG16L1;nc|ENSG00000085978|Q676U5-5|ATG16L1;ENST00000479942.5_1_2:234198871-234202993:+|nuORF	nc|ENSG00000085978|Q676U5-2|ATG16L1;ENST00000479942.5_1_2:234198871-234202993:+|nuORF	nc|ENSG00000085978|Q676U5-2|ATG16L1	MULTI-SECPEP	A375_MHC_IP_R2	2	539.6638793945312	2	539.803823	1077.59309	-1.1813	-0.00063765	0.24108	0.00013014	-0.94018	-0.00050751	539.803901758667	20.88	0.76004	21.49	21.059	21.819	0.61029					32	14	3	0	0	0	0.087712	1	6500	6500		66.457	0	1	7533900			45592	1822;12487	33257	33526	44539	44539					0.057399500831252226
RTNENIQRF	9	Unmodified	_RTNENIQRF_					0	0	0		nc|ENSG00000145715|P20936-2|RASA1;nc|ENSG00000145715|P20936-4|RASA1;ENSG00000145715|ENST00000274376|RASA1;nc|ENSG00000145715|P20936-3|RASA1	nc|ENSG00000145715|P20936-2|RASA1	nc|ENSG00000145715|P20936-2|RASA1	MULTI-SECPEP	A375_MHC_IP_R2	2	393.60699462890625	3	393.207266	1176.59997	-0.4963	-0.00019515	0.010165	3.9968E-06	-0.48614	-0.00019115	393.2072322404125	19.964	0.40322	20.575	20.349	20.752	0.61029					14	7	3	0	0	0	0.57806	1	6190	6190		24.882	7.0184	1	1590800			45593	5572	33258	33527	44540	44540					0.018732629636815545
RTNFRSIKSP	10	Unmodified	_RTNFRSIKSP_					0	0	0		HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|55|1|sense	HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|55|1|sense	HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|55|1|sense	MULTI-SECPEP	A375_MHC_IP_R2	2	402.96282958984375	3	402.563161	1204.66765	-0.29016	-0.00011681	0.57773	0.00023257	0.28756	0.00011576	402.56307076057294	23.474	0.3536	24.104	23.878	24.232	0.63014					18	6	4	0	0	0	0.91442	1	7560	7560		7.0371	0	1	19282000			45594	14118	33259	33528	44541	44541					0.07350712894503886
RTNKLRELS	9	Unmodified	_RTNKLRELS_					0	0	0		nc|ENSG00000176714|Q6ZUS5-2|CCDC121	nc|ENSG00000176714|Q6ZUS5-2|CCDC121	nc|ENSG00000176714|Q6ZUS5-2|CCDC121	MSMS	A375_MHC_IP_R2	2	372.95208740234375	3	372.887645	1115.64111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.04	1	133.2	132.7	133.7	0.16487								0	0	0	0.15486	1	52338	52338		1.0715	0.10919	1				45595	14781	33260	33529	44542	44542					0.087910240031988
RTNPNSGDFRF	11	Unmodified	_RTNPNSGDFRF_					0	0	0		ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	MULTI-MSMS	A375_MHC_IP_R1	1	437.9459228515625	3	437.546059	1309.61635	0.06707	2.9346E-05	-0.29298	-0.00012819	-0.22591	-9.8845E-05	437.5459332825181	35.615	0.71353	35.615	35.269	35.982	0					45	13	5	0	0	0	0.13744	1	11820	11820		63.555	36.427	1	19961000			45596	4318	33261	33530	44543	44543					-0.026076558702015973
RTNPNSGDFRF	11	Unmodified	_RTNPNSGDFRF_					0	0	0		ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	MULTI-MSMS	A375_MHC_IP_R1	1	656.2151489257812	2	655.81545	1309.61635	-0.2378	-0.00015595	-0.32306	-0.00021187	-0.56086	-0.00036782	655.8152344271364	35.606	0.56276	35.606	35.319	35.881	0					25	10	3	0	0	0	0.49231	1	11846	11846		42.862	27.015	1	8830500			45597	4318	33261	33530	44544	44544					-0.026076558702015973
RTNPNSGDFRF	11	Unmodified	_RTNPNSGDFRF_					0	0	0		ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	MULTI-MSMS	A375_MHC_IP_R2	2	656.2149047851562	2	655.81545	1309.61635	-1.0722	-0.00070314	0.19398	0.00012721	-0.87819	-0.00057593	655.8155372653928	34.805	0.45451	35.568	35.324	35.778	0.76338					22	8	3	0	0	0	0.40026	1	12563	12563		52.193	34.047	1	7868800			45598	4318	33261	33530	44545	44545					-0.026076558702015973
RTNPNSGDFRF	11	Unmodified	_RTNPNSGDFRF_					0	0	0		ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	MULTI-SECPEP	A375_MHC_IP_R2	2	437.94586181640625	3	437.546059	1309.61635	-0.49864	-0.00021818	-0.06801	-2.9758E-05	-0.56665	-0.00024793	437.54599102093283	34.774	0.65598	35.538	35.222	35.878	0.76338					37	12	4	0	0	0	0.56671	1	12545	12545		29.419	18.892	1	20545000			45599	4318	33261	33530	44546	44546					-0.026076558702015973
RTPAAVREL	9	Unmodified	_RTPAAVREL_					0	0	0		nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B	nc|ENSG00000136938|Q92688-2|ANP32B	nc|ENSG00000136938|Q92688-2|ANP32B	MULTI-MSMS	A375_MHC_IP_R1	1	507.197998046875	2	506.79854	1011.58253	-0.37715	-0.00019114	-2.0639	-0.001046	-2.4411	-0.0012371	506.798270360552	25.042	0.55574	25.042	24.852	25.408	0					20	10	3	0	0	0	0.16945	1	7255	7255		40.239	0.28188	1	13728000			45600	4845	33262	33531	44547	44547					0.0771996742871579
RTPEEIRRI	9	Unmodified	_RTPEEIRRI_					0	0	0		nc|ENSG00000196975|P09525-2|ANXA4;nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4	nc|ENSG00000196975|P09525-2|ANXA4	nc|ENSG00000196975|P09525-2|ANXA4	MSMS	A375_MHC_IP_R1	1	390.5802307128906	3	390.563161	1168.66765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.531	1	20.531	20.031	21.031	0								0	0	0	0.15486	1	5285	5285		9.2438	2.2067	1				45601	9097	33263	33532	44548	44548					0.090067128945293
RTPEFLRKF	9	Unmodified	_RTPEFLRKF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;EEF1G|p.P54S|1|0.37|ENSG00000254772|chr11:62572595-62572595|G/A|missense_variant	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	A375_MHC_IP_R1	1	398.9644470214844	3	398.564502	1192.67168	-0.10381	-4.1374E-05	0.091417	3.6435E-05	-0.012392	-4.939E-06	398.56450439657567	42.308	1.2655	42.308	41.88	43.146	0					73	24	5	0	0	0	0.008387	1	14579	14579		128.87	94.648	1	69186000			45602	9882	33264	33533	44549	44549					0.08304802388215649
RTPEFLRKF	9	Unmodified	_RTPEFLRKF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;EEF1G|p.P54S|1|0.37|ENSG00000254772|chr11:62572595-62572595|G/A|missense_variant	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	A375_MHC_IP_R2	2	398.9642333984375	3	398.564502	1192.67168	-0.29163	-0.00011623	0.025835	1.0297E-05	-0.26579	-0.00010594	398.5644886372514	41.241	1.1698	42.015	41.692	42.862	0.77451					56	22	4	0	0	0	0.008387	1	15252	15252		128.87	77.381	1	80752000			45603	9882	33264	33533	44550	44550					0.08304802388215649
RTPGFKRSF	9	Unmodified	_RTPGFKRSF_					0	0	0		nc|ENSG00000196352|P08174-2|CD55	nc|ENSG00000196352|P08174-2|CD55	nc|ENSG00000196352|P08174-2|CD55	MULTI-SECPEP	A375_MHC_IP_R1	1	366.2735290527344	3	365.873447	1094.59851	0.061747	2.2592E-05	0.22846	8.3587E-05	0.29021	0.00010618	365.8735538228065	23.355	0.4085	23.355	23.074	23.483	0					16	7	4	0	0	0	0.053555	1	6398	6398		92.201	54.227	1	21920000			45604	14834	33265	33534	44551	44551					0.05499673665599403
RTPGFKRSF	9	Unmodified	_RTPGFKRSF_					0	0	0		nc|ENSG00000196352|P08174-2|CD55	nc|ENSG00000196352|P08174-2|CD55	nc|ENSG00000196352|P08174-2|CD55	MULTI-SECPEP	A375_MHC_IP_R2	2	365.94866943359375	3	365.873447	1094.59851	-0.2545	-9.3113E-05	0.0084737	3.1003E-06	-0.24602	-9.0013E-05	365.8734134962127	20.453	1.2686	21.063	20.499	21.768	0.61029					57	24	4	0	0	0	0.16237	1	6359	6359		44.945	34.629	1	5011800			45605	14834	33265	33534	44552	44552					0.05499673665599403
RTPGLVVL	8	Unmodified	_RTPGLVVL_					0	0	0		ENST00000535229.1_1_6:166195147-166399619:-|nuORF	ENST00000535229.1_1_6:166195147-166399619:-|nuORF	ENST00000535229.1_1_6:166195147-166399619:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	428.30328369140625	2	427.776545	853.538538	-0.02235	-9.5608E-06	0.02149	9.1929E-06	-0.00085992	-3.6786E-07	427.77649716027815	56.609	0.71251	56.609	56.295	57.007	0					20	13	2	0	0	0	0.77562	1	20363	20363		10.824	1.4408	1	4529200			45606	13225	33266	33535	44553	44553					0.10590983002373378
RTPRPDRPR	9	Unmodified	_RTPRPDRPR_					0	0	0		nc|ENSG00000160460|Q9H254-3|SPTBN4;ENSG00000160460|ENST00000598249|SPTBN4	nc|ENSG00000160460|Q9H254-3|SPTBN4	nc|ENSG00000160460|Q9H254-3|SPTBN4	MULTI-MSMS	A375_MHC_IP_R1	1	384.2891540527344	3	384.22325	1149.64792	0.37778	0.00014515	-0.90957	-0.00034948	-0.53179	-0.00020433	384.22280225097194	37.278	1.4293	37.278	37.045	38.475	0					42	27	3	0	0	0	0.62591	1	12597	12597		13.615	9.086	1	19510000			45607	6422	33267	33536	44554	44554					0.07908381674405973
RTQIVHVKF	9	Unmodified	_RTQIVHVKF_					0	0	0		nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3	nc|ENSG00000091490|Q68CR1-2|SEL1L3	nc|ENSG00000091490|Q68CR1-2|SEL1L3	MULTI-MSMS	A375_MHC_IP_R1	1	376.932861328125	3	376.560981	1126.66111	0.12692	4.7793E-05	-0.099278	-3.7384E-05	0.027643	1.0409E-05	376.56091566751354	32.816	0.4045	32.816	32.585	32.989	0					15	7	3	0	0	0	0.63448	1	10662	10662		12.856	5.247	1	3757400			45608	1980	33268	33537	44555	44555					0.10284819733806216
RTQIVHVKF	9	Unmodified	_RTQIVHVKF_					0	0	0		nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3	nc|ENSG00000091490|Q68CR1-2|SEL1L3	nc|ENSG00000091490|Q68CR1-2|SEL1L3	MULTI-MSMS	A375_MHC_IP_R2	2	376.96112060546875	3	376.560981	1126.66111	0.21282	8.0139E-05	-0.14222	-5.3555E-05	0.070597	2.6584E-05	376.56103330209766	31.888	0.40467	32.625	32.453	32.857	0.73692					14	7	3	0	0	0	0.10518	1	11319	11319		49.742	27.084	1	2942300			45609	1980	33268	33537	44556	44556					0.10284819733806216
RTQLDLRRF	9	Unmodified	_RTQLDLRRF_					0	0	0		nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-4|PLTP;nc|ENSG00000100979|P55058-2|PLTP;ENSG00000100979|ENST00000372431|PLTP	nc|ENSG00000100979|P55058-3|PLTP	nc|ENSG00000100979|P55058-3|PLTP	MULTI-MSMS	A375_MHC_IP_R1	1	402.635009765625	3	402.235156	1203.68364	-0.67277	-0.00027061	0.52755	0.0002122	-0.14522	-5.8412E-05	402.23534154087474	36.696	0.55688	36.696	36.439	36.996	0					29	10	4	0	0	0	0.095445	1	12272	12272		51.488	29.689	1	19753000			45610	2237	33269	33538	44557	44557					0.08994419131408904
RTQLDLRRF	9	Unmodified	_RTQLDLRRF_					0	0	0		nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-4|PLTP;nc|ENSG00000100979|P55058-2|PLTP;ENSG00000100979|ENST00000372431|PLTP	nc|ENSG00000100979|P55058-3|PLTP	nc|ENSG00000100979|P55058-3|PLTP	MULTI-MSMS	A375_MHC_IP_R2	2	402.63494873046875	3	402.235156	1203.68364	-0.19927	-8.0155E-05	-0.051642	-2.0772E-05	-0.25092	-0.00010093	402.2351318410468	35.595	0.65925	36.358	36.132	36.792	0.76338					29	12	3	0	0	0	0.15441	1	12916	12916		41.347	27.732	1	16645000			45611	2237	33269	33538	44558	44558					0.08994419131408904
RTQLRLGFL	9	Unmodified	_RTQLRLGFL_					0	0	0			REV__ENST00000396774.6_3_8:54745628-54755576:-|nuORF	REV__ENST00000396774.6_3_8:54745628-54755576:-|nuORF	MSMS	A375_MHC_IP_R2	2	368.6012268066406	3	368.560981	1102.66111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.805	1	24.435	23.935	24.935	0.63014								0	0	0	0.15486	1	7718	7718		2.086	0	1		+		45612	24346	33270	33539	44559	44559					0.11388819733792843
RTQNLFVNKVW	11	Unmodified	_RTQNLFVNKVW_					0	0	0			REV__nc|ENSG00000117400|P40238-2|MPL	REV__nc|ENSG00000117400|P40238-2|MPL	MULTI-MSMS	A375_MHC_IP_R1	1	469.3297119140625	3	468.929733	1403.76737	-0.18188	-8.5288E-05	-0.15458	-7.2485E-05	-0.33645	-0.00015777	468.92964935372646	35.368	0.56087	35.368	35.116	35.676	0					34	10	5	0	0	0	0.72773	1	11716	11716		11.065	2.3135	1	23094000	+		45613	27190	33271	33540	44560	44560					0.08163530508431904
RTQNLFVNKVW	11	Unmodified	_RTQNLFVNKVW_					0	0	0			REV__nc|ENSG00000117400|P40238-2|MPL	REV__nc|ENSG00000117400|P40238-2|MPL	MULTI-SECPEP	A375_MHC_IP_R1	1	469.1487121582031	3	468.929733	1403.76737	-0.18188	-8.5288E-05	-0.15458	-7.2485E-05	-0.33645	-0.00015777	468.92964935372646	35.368	0.56087	35.368	35.116	35.676	0					34	10	5	0	0	0	0.99332	1	11768	11768		11.065	5.8668	1	23094000	+		45614	27190	33271	33540	44561	44561					0.08163530508431904
RTQRKELY	8	Unmodified	_RTQRKELY_					0	0	0			REV__ENST00000317216.2_1_8:22545460-22545559:-|nuORF	REV__ENST00000317216.2_1_8:22545460-22545559:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	365.6086120605469	3	365.208607	1092.60399	-0.0031338	-1.1445E-06	0.052201	1.9064E-05	0.049067	1.792E-05	365.208609804484	30.958	0.55749	31.676	31.417	31.974	0.71857					18	10	2	0	0	0	0.92091	1	10907	10907		26.268	11.311	1	11298000	+		45615	23543	33272	33541	44562	44562					0.0613935245742141
RTQSQASQISW	11	Unmodified	_RTQSQASQISW_					0	0	0		ENST00000561734.5_1_16:836841-837139:-|nuORF;ENST00000569601.5_1_16:836841-837139:-|nuORF	ENST00000561734.5_1_16:836841-837139:-|nuORF	ENST00000561734.5_1_16:836841-837139:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	646.7228393554688	2	646.323108	1290.63166	-0.65972	-0.00042639	-0.19836	-0.00012821	-0.85808	-0.0005546	646.322909762297	41.124	0.50758	41.124	41.013	41.521	0					16	9	2	0	0	0	0.011476	1	14214	14214		92.201	28.24	1	3298200			45616	13512	33273	33542	44563	44563					-0.0020278907300053106
RTQSQASQISW	11	Unmodified	_RTQSQASQISW_					0	0	0		ENST00000561734.5_1_16:836841-837139:-|nuORF;ENST00000569601.5_1_16:836841-837139:-|nuORF	ENST00000561734.5_1_16:836841-837139:-|nuORF	ENST00000561734.5_1_16:836841-837139:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	646.7229614257812	2	646.323108	1290.63166	-0.75455	-0.00048768	0.4344	0.00028076	-0.32015	-0.00020692	646.3231532129106	40.384	0.40557	41.158	40.98	41.386	0.77451					13	7	2	0	0	0	0.094476	1	14986	14986		70.929	38.143	1	2518400			45617	13512	33273	33542	44564	44564					-0.0020278907300053106
RTQVWPLQREP	11	Unmodified	_RTQVWPLQREP_					0	0	0			REV__nc|ENSG00000147799|Q9C0H5|ARHGAP39	REV__nc|ENSG00000147799|Q9C0H5|ARHGAP39	MSMS	A375_MHC_IP_R1	1	705.66357421875	2	705.386042	1408.75753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101	1	101	100.5	101.5	0								0	0	0	0.16312	1	37123	37123		2.4985	0	1		+		45618	19607	33274	33543	44565	44565					0.06950342503068896
RTQYMKYLYAY	11	Unmodified	_RTQYMKYLYAY_					0	0	0		nc|ENSG00000179361|Q8IVW6-3|ARID3B;ENSG00000179361|ENST00000346246|ARID3B;nc|ENSG00000179361|Q8IVW6|ARID3B	nc|ENSG00000179361|Q8IVW6-3|ARID3B	nc|ENSG00000179361|Q8IVW6-3|ARID3B	MSMS	A375_MHC_IP_R2	2	500.6241760253906	3	500.583234	1498.72787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.427	1	53.179	52.679	53.679	0.75225								0	0	0	0.16331	1	19761	19761		0.50596	0	1				45619	8225	33275	33544	44566	44566					-0.0015435755724411138
RTRAALLLF	9	Unmodified	_RTRAALLLF_					0	0	0		ENSG00000140678|ENST00000268296|ITGAX;ENST00000567409.1_1_16:31366575-31368500:+|nuORF;ENST00000564308.1_1_16:31366575-31367320:+|nuORF	ENSG00000140678|ENST00000268296|ITGAX	ENSG00000140678|ENST00000268296|ITGAX	MULTI-MSMS	A375_MHC_IP_R1	1	354.62554931640625	3	354.225709	1059.6553	-0.11351	-4.0209E-05	-0.035252	-1.2487E-05	-0.14876	-5.2696E-05	354.2256661785738	76.443	0.45387	76.443	76.168	76.622	0					23	8	3	0	0	0	0.56584	1	27852	27852		16.566	1.7276	1	6098700			45620	5176	33276	33545	44567	44567					0.12785721222121538
RTRAALLLF	9	Unmodified	_RTRAALLLF_					0	0	0		ENSG00000140678|ENST00000268296|ITGAX;ENST00000567409.1_1_16:31366575-31368500:+|nuORF;ENST00000564308.1_1_16:31366575-31367320:+|nuORF	ENSG00000140678|ENST00000268296|ITGAX	ENSG00000140678|ENST00000268296|ITGAX	MULTI-MSMS	A375_MHC_IP_R2	2	354.6256103515625	3	354.225709	1059.6553	-0.26347	-9.3329E-05	-0.20026	-7.0939E-05	-0.46374	-0.00016427	354.22568988554957	75.186	0.81229	75.923	75.519	76.331	0.73751					29	15	3	0	0	0	0.56584	1	28529	28529		16.566	1.7276	1	4312700			45621	5176	33276	33545	44568	44568					0.12785721222121538
RTRAAPAL	8	Unmodified	_RTRAAPAL_					0	0	0		ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	MULTI-MSMS	A375_MHC_IP_R2	2	428.6609802246094	2	428.261594	854.508634	-0.22299	-9.5496E-05	-0.12858	-5.5068E-05	-0.35157	-0.00015056	428.2614507584116	127.37	1.8779	127.64	127.36	129.24	0.26593					85	36	4	0	0	0	0.77717	1	49882	49882		5.2307	2.6532	1	273600000			45622	3608	33277	33546	44569	44569					0.07556044057025701
RTRDSILSF	9	Unmodified	_RTRDSILSF_					0	0	0		ENST00000219837.11_2_16:19726253-19729517:-|nuORF	ENST00000219837.11_2_16:19726253-19729517:-|nuORF	ENST00000219837.11_2_16:19726253-19729517:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	365.93658447265625	3	365.536612	1093.58801	-0.26484	-9.6809E-05	0.52637	0.00019241	0.26153	9.5598E-05	365.5368144292901	54.089	0.45754	54.84	54.661	55.118	0.75105					12	8	2	0	0	0	0.31609	1	20470	20470		29.437	11.995	1	1584500			45623	10104	33278	33547	44570	44570					0.04495646220493654
RTREDIEGSHW	11	Unmodified	_RTREDIEGSHW_					0	0	0		ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123	ENSG00000164068|ENST00000327697|RNF123	ENSG00000164068|ENST00000327697|RNF123	MULTI-MSMS	A375_MHC_IP_R1	1	462.54644775390625	3	462.556735	1384.64838	-0.45547	-0.00021068	-0.06422	-2.9706E-05	-0.51969	-0.00024039	462.5567122536033	24.017	0.55819	24.017	23.889	24.447	0					20	10	2	0	0	0	0.73732	1	6814	6814		1.9275	0.71267	1	32988000			45624	6769	33279	33548	44571	44571					-0.028562881870584533
RTREDIEGSHW	11	Unmodified	_RTREDIEGSHW_					0	0	0		ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123	ENSG00000164068|ENST00000327697|RNF123	ENSG00000164068|ENST00000327697|RNF123	MULTI-MSMS	A375_MHC_IP_R2	2	462.95635986328125	3	462.556735	1384.64838	-0.8378	-0.00038753	0.044431	2.0552E-05	-0.79337	-0.00036698	462.5567644736705	23.279	0.45468	23.909	23.675	24.129	0.63014					14	6	3	0	0	0	0.2687	1	7484	7484		49.159	41.214	1	21619000			45625	6769	33279	33548	44572	44572					-0.028562881870584533
RTREDIEGSHW	11	Unmodified	_RTREDIEGSHW_					0	0	0		ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123	ENSG00000164068|ENST00000327697|RNF123	ENSG00000164068|ENST00000327697|RNF123	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	462.556735	1384.64838	-0.45547	-0.00021068	-0.06422	-2.9706E-05	-0.51969	-0.00024039	462.5567122536033	24.017	0.55819	24.017	23.889	24.447	0	0.054033	-6.2137E-05	NaN	49.159	20	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32988000			45626	6769	33279	33548							-0.028562881870584533
RTRIGYSF	8	Unmodified	_RTRIGYSF_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000583408.5_1_17:30207568-30228646:-|nuORF;ENST00000490218.6_1_17:30212004-30222015:-|nuORF;ENST00000560291.2_1_15:52152484-52153489:-|nuORF;ENST00000579878.1_1_17:30219240-30228646:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-SECPEP	A375_MHC_IP_R1	1	500.67193603515625	2	500.272158	998.529764	-0.16852	-8.4307E-05	-0.47012	-0.00023519	-0.63865	-0.0003195	500.2719771070242	35.644	1.0199	35.644	35.369	36.389	0					66	19	6	0	0	0	0.79439	1	11833	11833		29.841	8.0939	1	88847000			45627	2825	33280	33549	44573	44573					0.03044009365896727
RTRIGYSF	8	Unmodified	_RTRIGYSF_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000583408.5_1_17:30207568-30228646:-|nuORF;ENST00000490218.6_1_17:30212004-30222015:-|nuORF;ENST00000560291.2_1_15:52152484-52153489:-|nuORF;ENST00000579878.1_1_17:30219240-30228646:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-SECPEP	A375_MHC_IP_R2	2	500.6719665527344	2	500.272158	998.529764	-0.77197	-0.00038619	-0.084083	-4.2064E-05	-0.85605	-0.00042826	500.2721245885811	34.739	0.91261	35.503	34.966	35.878	0.76338					47	17	5	0	0	0	0.47399	1	12517	12517		57.722	38.465	1	102980000			45628	2825	33280	33549	44574	44574					0.03044009365896727
RTRKGILLF	9	Unmodified	_RTRKGILLF_					0	0	0		nc|ENSG00000102007|Q04941-2|PLP2;ENSG00000102007|ENST00000376327|PLP2	nc|ENSG00000102007|Q04941-2|PLP2	nc|ENSG00000102007|Q04941-2|PLP2	MULTI-MSMS	A375_MHC_IP_R1	1	368.97314453125	3	368.573109	1102.6975	0.38178	0.00014072	0.17758	6.5451E-05	0.55936	0.00020617	368.5731312644363	51.271	0.86343	51.271	50.915	51.778	0					43	16	4	0	0	0	0.3489	1	18146	18146		27.223	0	1	22192000			45629	2348	33281	33550	44575	44575					0.1502569663050508
RTRKRRRWRYS	11	Unmodified	_RTRKRRRWRYS_					0	0	0		ENST00000433071.2_1_21:32931573-32932426:+|nuORF	ENST00000433071.2_1_21:32931573-32932426:+|nuORF	ENST00000433071.2_1_21:32931573-32932426:+|nuORF	MSMS	A375_MHC_IP_R2	2	810.9769897460938	2	810.974548	1619.93454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.89	1	69.625	69.125	70.125	0.73511								0	0	0	0.16354	1	26103	26103		0.30703	0.30703	1				45630	11888	33282	33551	44576	44576					0.14937235896582024
RTRLTPVLPER	11	Unmodified	_RTRLTPVLPER_					0	0	0			REV__ENST00000392025.5_1_19:41081471-41081663:+|nuORF	REV__ENST00000392025.5_1_19:41081471-41081663:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1338.201904296875	1	1337.80119	1336.79392	0.46421	0.00062102	-0.14822	-0.00019829	0.31599	0.00042273	1337.800672234197	149.29	1.7165	149.31	148.07	149.79	0.01825					126	48	3	0	0	0	0.73934	1	57920	57920		0	0	1	436810	+		45631	24269	33283	33552	44577	44577					0.13899219399741014
RTRLWLRWKVH	11	Unmodified	_RTRLWLRWKVH_					0	0	0		ENST00000538342.5_1_16:28875260-28880378:+|nuORF	ENST00000538342.5_1_16:28875260-28880378:+|nuORF	ENST00000538342.5_1_16:28875260-28880378:+|nuORF	MSMS	A375_MHC_IP_R1	1	776.0574951171875	2	775.962586	1549.91062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.13	1	124.13	123.63	124.63	0								0	0	0	0.16353	1	46600	46600		0.35063	0.043601	1				45632	13258	33284	33553	44578	44578					0.15766002410168767
RTRLWLRWKVH	11	Unmodified	_RTRLWLRWKVH_					0	0	0		ENST00000538342.5_1_16:28875260-28880378:+|nuORF	ENST00000538342.5_1_16:28875260-28880378:+|nuORF	ENST00000538342.5_1_16:28875260-28880378:+|nuORF	MSMS	A375_MHC_IP_R2	2	776.3626708984375	2	775.962586	1549.91062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.172	1	95.922	95.422	96.422	0.75045								0	0	0	0.16353	1	36157	36157		0.35063	0	1				45633	13258	33284	33553	44579	44579					0.15766002410168767
RTRNEELAQTW	11	Unmodified	_RTRNEELAQTW_					0	0	0		ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4;ENST00000572760.5_1_17:79526287-79533446:-|nuORF;ENST00000572346.5_1_17:79526287-79533945:-|nuORF	ENSG00000182446|ENST00000331134|NPLOC4	ENSG00000182446|ENST00000331134|NPLOC4	MULTI-MSMS	A375_MHC_IP_R1	1	468.9720153808594	3	468.572385	1402.69533	-0.37421	-0.00017534	-0.072472	-3.3958E-05	-0.44668	-0.0002093	468.90677587345095	33.245	0.40637	33.245	33.09	33.496	0					16	7	3	0	0	0	0.17486	1	10849	10849		40.714	31.962	1	7539300			45634	8406	33285	33554	44580	44580					0.010085713640592076
RTRNEELAQTW	11	Unmodified	_RTRNEELAQTW_					0	0	0		ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4;ENST00000572760.5_1_17:79526287-79533446:-|nuORF;ENST00000572346.5_1_17:79526287-79533945:-|nuORF	ENSG00000182446|ENST00000331134|NPLOC4	ENSG00000182446|ENST00000331134|NPLOC4	MULTI-MSMS	A375_MHC_IP_R2	2	468.9720764160156	3	468.572385	1402.69533	-0.66278	-0.00031056	-0.14973	-7.0159E-05	-0.81251	-0.00038072	468.5723136900095	32.521	0.35636	33.258	33.061	33.417	0.73692					11	6	2	0	0	0	0.17486	1	11599	11599		40.714	28.539	1	8700200			45635	8406	33285	33554	44581	44581					0.010085713640592076
RTRRCACCL	9	Unmodified	_RTRRCACCL_					0	0	0		ENST00000504091.1_1_5:148427423-148427504:-|nuORF;ENST00000504690.5_1_5:148424098-148427504:-|nuORF	ENST00000504091.1_1_5:148427423-148427504:-|nuORF	ENST00000504091.1_1_5:148427423-148427504:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	360.6289978027344	3	361.177379	1080.51031	-0.84104	-0.00030376	-0.026882	-9.7093E-06	-0.86792	-0.00031347	361.177218113781	29.517	0.45415	30.216	30.083	30.537	0.69872					10	8	2	0	0	0	0.76827	1	10381	10381		2.086	0	1	1232800			45636	12814	33286	33555	44582	44582					-0.02672729512528349
RTRRGRAPRC	10	Unmodified	_RTRRGRAPRC_					0	0	0			REV__ENST00000554273.1_1_14:50998776-50999365:-|nuORF	REV__ENST00000554273.1_1_14:50998776-50999365:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	410.93121337890625	3	410.235385	1227.68432	-0.27896	-0.00011444	-0.64533	-0.00026474	-0.92429	-0.00037918	410.23510563873543	19.554	0.75889	20.164	19.74	20.499	0.61029					38	14	4	0	0	0	0.71619	1	5889	5889		5.0475	0.85802	1	5818100	+		45637	26076	33287	33556	44583	44583					0.07958935299484438
RTRRHLAEY	9	Unmodified	_RTRRHLAEY_					0	0	0		ENSG00000134440|ENST00000256854|NARS1	ENSG00000134440|ENST00000256854|NARS1	ENSG00000134440|ENST00000256854|NARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	401.33380126953125	3	401.223139	1200.64759	-0.15962	-6.4042E-05	1.7294	0.00069389	1.5698	0.00062985	401.2238640540646	23.062	0.50238	23.062	22.673	23.176	0					16	9	2	0	0	0	0.78353	1	6233	6233		6.1918	2.0023	1	1895300			45638	4575	33288	33557	44584	44584					0.05528961954564693
RTRRWRRSS	9	Unmodified	_RTRRWRRSS_					0	0	0			REV__nc|ENSG00000180767|Q8NET6-2|CHST13	REV__nc|ENSG00000180767|Q8NET6-2|CHST13	MULTI-SECPEP	A375_MHC_IP_R1	1	630.7293701171875	2	630.860861	1259.70717	-0.65832	-0.00041531	-0.19012	-0.00011994	-0.84844	-0.00053525	630.8603025128472	128.91	1.5256	128.91	128.02	129.55	0					40	29	3	0	0	0	0.77901	1	49517	49517		9.3831	4.4861	1	8636700	+		45639	27389	33289	33558	44585	44585					0.08770277688608985
RTRWFTWVFRR	11	Unmodified	_RTRWFTWVFRR_					0	0	0			REV__ENST00000479578.5_1_1:110198981-110200495:+|nuORF	REV__ENST00000479578.5_1_1:110198981-110200495:+|nuORF	MSMS	A375_MHC_IP_R1	1	537.7044067382812	3	537.632021	1609.87423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.144	1	91.144	90.644	91.644	0								0	0	0	0.16338	1	33491	33491		1.1098	0.6038	1		+		45640	25234	33290	33559	44586	44586					0.09369125513444487
RTSAYPVKSV	10	Unmodified	_RTSAYPVKSV_					0	0	0		ENST00000462152.5_1_3:98451353-98503832:+|nuORF	ENST00000462152.5_1_3:98451353-98503832:+|nuORF	ENST00000462152.5_1_3:98451353-98503832:+|nuORF	MSMS	A375_MHC_IP_R2	2	554.2293701171875	2	554.31148	1106.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.41	1	126.71	126.21	127.21	0.2951								0	0	0	0.15391	1	49453	49453		8.1555	0.8663	1				45641	12197	33291	33560	44587	44587					0.059368168803075605
RTSHRQQTV	9	Unmodified	_RTSHRQQTV_					0	0	0			REV__ENST00000465950.5_1_12:46320976-46321084:-|nuORF	REV__ENST00000465950.5_1_12:46320976-46321084:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	371.2562561035156	3	371.535494	1111.58465	0.39647	0.0001473	-0.51591	-0.00019168	-0.11944	-4.4377E-05	371.5358068546671	31.058	0.30415	31.776	31.567	31.872	0.71857					6	5	2	0	0	0	0.79191	1	10931	10931		2.086	0	1	576570	+		45642	25030	33292	33561	44588	44588					0.03332396166501894
RTSIVEKRF	9	Unmodified	_RTSIVEKRF_					0	0	0		ENST00000587500.5_1_19:10823370-10823943:+|nuORF;ENSG00000213339|ENST00000250237|QTRT1	ENST00000587500.5_1_19:10823370-10823943:+|nuORF	ENST00000587500.5_1_19:10823370-10823943:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	379.6241455078125	3	379.224257	1134.65094	0.29969	0.00011365	-0.34307	-0.0001301	-0.043372	-1.6448E-05	379.2241001146036	23.202	0.66086	23.202	22.974	23.635	0					16	12	2	0	0	0	0.026307	1	6313	6313		78.116	37.391	1	33282000			45643	9562	33293	33562	44589	44589					0.08900212008552444
RTSIVEKRF	9	Unmodified	_RTSIVEKRF_					0	0	0		ENST00000587500.5_1_19:10823370-10823943:+|nuORF;ENSG00000213339|ENST00000250237|QTRT1	ENST00000587500.5_1_19:10823370-10823943:+|nuORF	ENST00000587500.5_1_19:10823370-10823943:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	379.6239929199219	3	379.224257	1134.65094	-0.24994	-9.4784E-05	0.056887	2.1573E-05	-0.19305	-7.3211E-05	379.2242324259124	20.29	0.91345	20.9	20.499	21.413	0.61029					42	17	3	0	0	0	0.35082	1	6246	6246		27.129	9.2656	1	9503000			45644	9562	33293	33562	44590	44590					0.08900212008552444
RTSPPVRAF	9	Unmodified	_RTSPPVRAF_					0	0	0		ENSG00000177646|ENST00000308982|ACAD9	ENSG00000177646|ENST00000308982|ACAD9	ENSG00000177646|ENST00000308982|ACAD9	MULTI-SECPEP	A375_MHC_IP_R2	2	516.1925659179688	2	515.793258	1029.57196	-0.97209	-0.0005014	0.17602	9.0788E-05	-0.79608	-0.00041061	515.7933192204475	26.883	0.46055	27.543	27.313	27.773	0.65992					13	8	2	0	0	0	0.67539	1	9137	9137		16.149	5.3252	1	5319800			45645	8097	33294	33563	44591	44591					0.05835984774262215
RTSVYDTYPP	10	Unmodified	_RTSVYDTYPP_					0	0	0			REV__ENSG00000112144|ENST00000676107|CILK1	REV__ENSG00000112144|ENST00000676107|CILK1	MULTI-SECPEP	A375_MHC_IP_R1	1	399.9470520019531	3	400.196144	1197.5666	-0.47086	-0.00018844	-0.9107	-0.00036446	-1.3816	-0.00055289	400.1958337733159	24.137	0.70689	24.137	23.991	24.698	0					27	13	3	0	0	0	0.92832	1	6885	6885		12.175	2.931	1	16403000	+		45646	17710	33295	33564	44592	44592					-0.024277835988641527
RTTDLLTDW	9	Unmodified	_RTTDLLTDW_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R1	1	561.1851806640625	2	560.785296	1119.55604	-0.39623	-0.0002222	-1.6696	-0.00093631	-2.0659	-0.0011585	560.7848094403923	89.181	0.55917	89.181	88.764	89.323	0					23	10	3	0	0	0	0.13845	1	32765	32765		43.772	13.136	1	2523200			45647	9114	33296	33565	44593	44593					0.0010423374669699115
RTTDLLTDW	9	Unmodified	_RTTDLLTDW_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	A375_MHC_IP_R2	2	561.1847534179688	2	560.785296	1119.55604	-0.56472	-0.00031669	-0.78172	-0.00043838	-1.3464	-0.00075506	560.7848959611018	88.371	0.50542	89.103	88.774	89.279	0.7318					15	9	2	0	0	0	0.35628	1	33616	33616		51.63	35.783	1	3565700			45648	9114	33296	33565	44594	44594					0.0010423374669699115
RTTETQVLV	9	Unmodified	_RTTETQVLV_					0	0	0		nc|ENSG00000170445|P12081-2|HARS1;ENSG00000170445|ENST00000504156|HARS1;nc|ENSG00000170445|P12081-3|HARS1;nc|ENSG00000170445|P12081-4|HARS1;ENST00000509087.1_1_5:140053844-140054778:-|nuORF	nc|ENSG00000170445|P12081-2|HARS1	nc|ENSG00000170445|P12081-2|HARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	523.6686401367188	2	523.795663	1045.57677	-0.67669	-0.00035445	-2.2287	-0.0011674	-2.9054	-0.0015218	523.794348174582	36.003	0.51064	36.766	36.435	36.946	0.76338					16	9	2	0	0	0	0.61452	1	13113	13113		20.415	3.4722	1	3495400			45649	7505	33297	33566	44595	44595					0.05580824126354855
RTTFFHHEY	9	Unmodified	_RTTFFHHEY_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA;ENST00000541366.1_1_1:160303391-160312960:-|nuORF;COPA|p.P106L|1|0.54|ENSG00000122218|chr1:160333672-160333672|G/A|missense_variant	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	A375_MHC_IP_R1	1	413.5962219238281	3	413.196478	1236.56761	0.047583	1.9661E-05	-0.22567	-9.3247E-05	-0.17809	-7.3586E-05	413.19624665214434	28.072	0.50261	28.072	27.786	28.288	0					18	9	3	0	0	0	0.04093	1	8618	8618		55.249	43.074	1	4699700			45650	3768	33298	33567	44596	44596					-0.04121524439278801
RTTFFHHEY	9	Unmodified	_RTTFFHHEY_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA;ENST00000541366.1_1_1:160303391-160312960:-|nuORF;COPA|p.P106L|1|0.54|ENSG00000122218|chr1:160333672-160333672|G/A|missense_variant	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	A375_MHC_IP_R2	2	413.9308776855469	3	413.196478	1236.56761	0.037894	1.5657E-05	0.010558	4.3625E-06	0.048451	2.002E-05	413.196290563741	27.243	0.46006	27.921	27.638	28.098	0.67857					21	8	4	0	0	0	0.12938	1	9299	9299		64.692	53.174	1	7518000			45651	3768	33298	33567	44597	44597					-0.04121524439278801
RTTHLHNDLW	10	Unmodified	_RTTHLHNDLW_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1;ENST00000491536.5_1_1:12024755-12035393:+|nuORF	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	A375_MHC_IP_R1	1	431.9546203613281	3	431.554666	1291.64217	-0.22757	-9.8208E-05	-0.43942	-0.00018963	-0.66699	-0.00028784	431.55400496064124	31.151	0.86102	31.151	30.857	31.718	0					39	16	3	0	0	0	0.59037	1	9969	9969		19.144	10.168	1	4253700			45652	1777	33299	33568	44598	44598					0.008012383720597427
RTTHLHNDLW	10	Unmodified	_RTTHLHNDLW_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1;ENST00000491536.5_1_1:12024755-12035393:+|nuORF	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	A375_MHC_IP_R2	2	431.9547119140625	3	431.554666	1291.64217	-0.29408	-0.00012691	0.25865	0.00011162	-0.035437	-1.5293E-05	431.55465891622225	30.249	0.55787	30.967	30.658	31.216	0.71857					23	10	3	0	0	0	0.59037	1	10637	10637		14.838	9.0545	1	3914000			45653	1777	33299	33568	44599	44599					0.008012383720597427
RTTLVDNNTW	10	Unmodified	_RTTLVDNNTW_					0	0	0		ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	MULTI-MSMS	A375_MHC_IP_R1	1	610.7075805664062	2	610.306926	1218.5993	-0.35124	-0.00021437	0.19872	0.00012128	-0.15253	-9.3088E-05	610.3070911004506	52.396	0.60863	52.396	52.085	52.694	0					23	11	3	0	0	0	0.44533	1	18604	18604		42.312	42.312	1	7895100			45654	6678	33300	33569	44600	44600					-0.0012557647601170174
RTTLVDNNTW	10	Unmodified	_RTTLVDNNTW_					0	0	0		ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	MULTI-MSMS	A375_MHC_IP_R2	2	610.7068481445312	2	610.306926	1218.5993	-0.72157	-0.00044038	0.21193	0.00012934	-0.50964	-0.00031104	610.3071275759313	51.63	0.65983	52.382	51.966	52.626	0.75225					23	12	3	0	0	0	0.44533	1	19427	19427		42.312	42.312	1	8268100			45655	6678	33300	33569	44601	44601					-0.0012557647601170174
RTTNLIRHF	9	Unmodified	_RTTNLIRHF_					0	0	0		nc|ENSG00000197714|Q14592-2|ZNF460;ENSG00000197714|ENST00000360338|ZNF460	nc|ENSG00000197714|Q14592-2|ZNF460	nc|ENSG00000197714|Q14592-2|ZNF460	MULTI-MSMS	A375_MHC_IP_R1	1	386.95611572265625	3	386.556118	1156.64652	0.14099	5.4501E-05	-0.17616	-6.8097E-05	-0.035172	-1.3596E-05	386.55604113325774	27.254	1.109	27.254	26.928	28.037	0					58	21	5	0	0	0	0.0056874	1	8195	8195		139.32	100.71	1	155200000			45656	9187	33301	33570	44602	44602					0.07446747585663616
RTTNLIRHF	9	Unmodified	_RTTNLIRHF_					0	0	0		nc|ENSG00000197714|Q14592-2|ZNF460;ENSG00000197714|ENST00000360338|ZNF460	nc|ENSG00000197714|Q14592-2|ZNF460	nc|ENSG00000197714|Q14592-2|ZNF460	MULTI-MSMS	A375_MHC_IP_R2	2	386.9560546875	3	386.556118	1156.64652	-0.51065	-0.0001974	0.27831	0.00010758	-0.23235	-8.9815E-05	386.5562399773949	26.458	1.4778	27.118	26.653	28.131	0.65992					82	28	5	0	0	0	0.0056874	1	8889	8889		139.32	100.71	1	103450000			45657	9187	33301	33570	44603	44603					0.07446747585663616
RTTNLIRHF	9	Unmodified	_RTTNLIRHF_					0	0	0		nc|ENSG00000197714|Q14592-2|ZNF460;ENSG00000197714|ENST00000360338|ZNF460	nc|ENSG00000197714|Q14592-2|ZNF460	nc|ENSG00000197714|Q14592-2|ZNF460	MULTI-MSMS	A375_MHC_IP_R2	2	579.7300415039062	2	579.330539	1156.64652	-0.63186	-0.00036606	0.16445	9.5272E-05	-0.46741	-0.00027078	579.3305246158792	26.442	0.4559	27.102	26.907	27.363	0.65992					16	8	2	0	0	0	0.61998	1	8965	8965		13.906	0	1	2728200			45658	9187	33301	33570	44604	44604					0.07446747585663616
RTVEALYKF	9	Unmodified	_RTVEALYKF_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	564.2159423828125	2	563.816399	1125.61824	-0.45686	-0.00025759	0.26617	0.00015007	-0.1907	-0.00010752	563.8165047639632	50.381	0.61388	50.381	50.049	50.663	0					32	11	4	0	0	0	0.3697	1	17810	17810		37.075	23.169	1	21390000			45659	1609	33302	33571	44605	44605					0.06046004885683942
RTVEALYKF	9	Unmodified	_RTVEALYKF_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	564.2158813476562	2	563.816399	1125.61824	-0.79883	-0.00045039	0.16305	9.1931E-05	-0.63578	-0.00035846	563.8164034247449	49.508	0.76138	50.265	49.944	50.706	0.75737					34	14	4	0	0	0	0.24655	1	18554	18554		71.708	40.44	1	25136000			45660	1609	33302	33571	44606	44606					0.06046004885683942
RTVEIKRW	8	Unmodified	_RTVEIKRW_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;chr16:1465338-1471624|428|61.07|0.14|8.74|-|ENST00000569851|CLCN7,CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-SECPEP	A375_MHC_IP_R1	1	363.2828063964844	3	363.217214	1086.62981	0.16564	6.0163E-05	-2.181	-0.00079219	-2.0154	-0.00073203	363.21658526673565	52.412	0.20134	52.412	52.237	52.438	0					5	3	2	0	0	0	0.972	1	18647	18647		13.906	6.429	1	1066400			45661	2435	33303	33572	44607	44607					0.08996246699712174
RTVEKPPKF	9	Unmodified	_RTVEKPPKF_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000173898|O15020-2|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R1	1	367.96435546875	3	367.885353	1100.63423	0.26887	9.8915E-05	0.16453	6.0527E-05	0.4334	0.00015944	367.8853513968986	20.029	0.86234	20.029	19.623	20.485	0					41	16	4	0	0	0	0.012524	1	5057	5057		115.06	63.571	1	13608000			45662	3298;7838	33304	33573	44608	44608					0.08793711122598324
RTVEKTWKL	9	Unmodified	_RTVEKTWKL_					0	0	0		nc|ENSG00000114423|Q13191-3|CBLB;nc|ENSG00000114423|Q13191-2|CBLB;ENSG00000114423|ENST00000394030|CBLB	nc|ENSG00000114423|Q13191-3|CBLB	nc|ENSG00000114423|Q13191-3|CBLB	MULTI-MSMS	A375_MHC_IP_R1	1	387.9123229980469	3	387.564391	1159.67134	-0.099872	-3.8707E-05	0.15829	6.1349E-05	0.058423	2.2643E-05	387.56452065147494	26.578	0.80615	26.578	26.221	27.027	0					45	14	4	0	0	0	0.0095972	2	8024	7950;8024		109.15	45.919	1	55667000			45663	3220	33305	33574	44609;44610	44610					0.09789382668373037
RTVEKTWKL	9	Unmodified	_RTVEKTWKL_					0	0	0		nc|ENSG00000114423|Q13191-3|CBLB;nc|ENSG00000114423|Q13191-2|CBLB;ENSG00000114423|ENST00000394030|CBLB	nc|ENSG00000114423|Q13191-3|CBLB	nc|ENSG00000114423|Q13191-3|CBLB	MULTI-MSMS	A375_MHC_IP_R2	2	388.2584533691406	3	387.564391	1159.67134	-0.58556	-0.00022694	0.54281	0.00021037	-0.042749	-1.6568E-05	387.56470618631477	25.97	1.0655	26.629	25.992	27.058	0.65992					53	20	4	0	0	0	0.0099088	4	8702	8634;8650;8702;8819		118.81	55.586	1	31394000			45664	3220	33305	33574	44611;44612;44613;44614	44613					0.09789382668373037
RTVIIEQSW	9	Unmodified	_RTVIIEQSW_					0	0	0		ENSG00000144381|ENST00000388968|HSPD1;nc|ENSG00000144381|P10809-2|HSPD1;ENST00000461097.1_1_2:198361816-198363572:-|nuORF;ENST00000503199.1_1_5:21882861-21883359:+|nuORF;ENST00000476746.5_1_2:198360008-198364584:-|nuORF;ENST00000388967.3_1_3:36809324-36810203:-|nuORF	ENSG00000144381|ENST00000388968|HSPD1	ENSG00000144381|ENST00000388968|HSPD1	MULTI-SECPEP	A375_MHC_IP_R1	1	566.7109375	2	566.31148	1130.60841	-0.43473	-0.00024619	0.18132	0.00010269	-0.25341	-0.00014351	566.3114675155502	64.664	0.45875	64.664	64.444	64.903	0					19	8	3	0	0	0	0.601	1	23391	23391		32.037	13.891	1	3608700			45665	5482	33306	33575	44615	44615					0.04832816880320934
RTVIIEQSW	9	Unmodified	_RTVIIEQSW_					0	0	0		ENSG00000144381|ENST00000388968|HSPD1;nc|ENSG00000144381|P10809-2|HSPD1;ENST00000461097.1_1_2:198361816-198363572:-|nuORF;ENST00000503199.1_1_5:21882861-21883359:+|nuORF;ENST00000476746.5_1_2:198360008-198364584:-|nuORF;ENST00000388967.3_1_3:36809324-36810203:-|nuORF	ENSG00000144381|ENST00000388968|HSPD1	ENSG00000144381|ENST00000388968|HSPD1	MULTI-SECPEP	A375_MHC_IP_R2	2	566.7112426757812	2	566.31148	1130.60841	-0.34371	-0.00019465	-0.33395	-0.00018912	-0.67766	-0.00038377	566.3114802175137	63.883	0.81346	64.623	64.292	65.106	0.74022					31	15	3	0	0	0	0.39266	1	24199	24199		49.527	24.536	1	3874100			45666	5482	33306	33575	44616	44616					0.04832816880320934
RTVIRPFYL	9	Unmodified	_RTVIRPFYL_					0	0	0		ENSG00000108679|ENST00000262776|LGALS3BP;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENSG00000108679|ENST00000262776|LGALS3BP;ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENSG00000108679|ENST00000262776|LGALS3BP	MULTI-MSMS	A375_MHC_IP_R1	1	388.9574279785156	3	388.901114	1163.68151	0.69006	0.00026837	0.45276	0.00017608	1.1428	0.00044445	388.9009709160241	69.554	1.1674	69.554	69.121	70.289	0					34	22	2	0	0	0	0.43945	1	25229	25229		22.775	10.6	1	10131000			45667	2829;13730	33307	33576	44617	44617					0.10621990393610758
RTVIRPFYL	9	Unmodified	_RTVIRPFYL_					0	0	0		ENSG00000108679|ENST00000262776|LGALS3BP;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENSG00000108679|ENST00000262776|LGALS3BP;ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENSG00000108679|ENST00000262776|LGALS3BP	MULTI-MSMS	A375_MHC_IP_R2	2	389.30133056640625	3	388.901114	1163.68151	-0.048756	-1.8961E-05	0.99757	0.00038795	0.94881	0.00036899	388.9012016347782	68.587	1.0638	69.323	69.018	70.082	0.73511					43	20	4	0	0	0	0.11448	2	25966	25966;26026		48.073	24.272	1	8980200			45668	2829;13730	33307	33576	44618;44619	44618					0.10621990393610758
RTVIRPFYL	9	Unmodified	_RTVIRPFYL_					0	0	0		ENSG00000108679|ENST00000262776|LGALS3BP;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENSG00000108679|ENST00000262776|LGALS3BP;ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENSG00000108679|ENST00000262776|LGALS3BP	MULTI-SECPEP	A375_MHC_IP_R2	2	583.2481689453125	2	582.848033	1163.68151	-0.28877	-0.00016831	0.073894	4.3069E-05	-0.21488	-0.00012524	582.8481090733954	68.555	0.55569	69.29	69.07	69.626	0.73512					21	10	3	0	0	0	0.61452	1	25980	25980		20.415	8.9198	1	3827600			45669	2829;13730	33307	33576	44620	44620					0.10621990393610758
RTVKIVMG	8	Unmodified	_RTVKIVMG_					0	0	0		ENSG00000171495|ENST00000399564|MROH2B;nc|ENSG00000171495|Q7Z745-2|MROH2B	ENSG00000171495|ENST00000399564|MROH2B	ENSG00000171495|ENST00000399564|MROH2B	MSMS	A375_MHC_IP_R2	2	452.33270263671875	2	452.275855	902.537157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.06	1	133.23	132.73	133.73	0.16487								0	0	0	0.16876	1	52349	52349		2.5775	0	1				45670	7610	33308	33577	44621	44621					0.08199025641977187
RTVKYMIKE	9	Unmodified	_RTVKYMIKE_					0	0	0			REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-MSMS	A375_MHC_IP_R2	2	390.2896728515625	3	389.889998	1166.64816	-0.5691	-0.00022189	0.20597	8.0306E-05	-0.36313	-0.00014158	389.89002524384523	24.784	1.0163	25.428	25.212	26.229	0.64368					38	19	3	0	0	0	0.48411	2	8214	8194;8214		20.581	3.5324	1	11628000	+		45671	19876	33309	33578	44622;44623	44623					0.07150620559400522
RTVLQPKKL	9	Unmodified	_RTVLQPKKL_					0	0	0		nc|ENSG00000178997|Q8NHP7-2|EXD1;nc|ENSG00000178997|Q8NHP7|EXD1;ENSG00000178997|ENST00000458580|EXD1	nc|ENSG00000178997|Q8NHP7-2|EXD1	nc|ENSG00000178997|Q8NHP7-2|EXD1	MULTI-SECPEP	A375_MHC_IP_R2	2	360.9762878417969	3	361.572998	1081.69716	-1.0195	-0.00036864	-0.36062	-0.00013039	-1.3802	-0.00049903	361.9074439608201	29.252	0.50526	29.951	29.83	30.335	0.69872					14	9	2	0	0	0	0.63622	1	10165	10165		19.362	7.8672	1	6744900			45672	8195	33310	33579	44624	44624					0.15958276910646418
RTVQGGVLQGW	11	Unmodified	_RTVQGGVLQGW_					0	0	0		ENSG00000130818|ENST00000253115|ZNF426	ENSG00000130818|ENST00000253115|ZNF426	ENSG00000130818|ENST00000253115|ZNF426	MULTI-SECPEP	A375_MHC_IP_R1	1	601.2281494140625	2	600.827829	1199.64111	-0.56121	-0.00033719	0.77785	0.00046735	0.21663	0.00013016	600.8281590320147	66.322	0.50807	66.322	66.072	66.58	0					21	9	3	0	0	0	0.69618	1	24026	24026		36.395	20.548	1	3922200			45673	4285	33311	33580	44625	44625					0.04927024003177394
RTVQGGVLQGW	11	Unmodified	_RTVQGGVLQGW_					0	0	0		ENSG00000130818|ENST00000253115|ZNF426	ENSG00000130818|ENST00000253115|ZNF426	ENSG00000130818|ENST00000253115|ZNF426	MULTI-SECPEP	A375_MHC_IP_R2	2	601.2275390625	2	600.827829	1199.64111	-0.63294	-0.00038029	0.18678	0.00011222	-0.44617	-0.00026807	600.8279073590884	65.443	0.50737	66.181	65.917	66.425	0.73811					22	9	3	0	0	0	0.10638	1	24802	24802		53.47	36.357	1	3821900			45674	4285	33311	33580	44626	44626					0.04927024003177394
RTVRIWRQY	9	Unmodified	_RTVRIWRQY_					0	0	0		ENSG00000144021|ENST00000488633|CIAO1;ENST00000272402.2_1_2:96932116-96934407:+|nuORF	ENSG00000144021|ENST00000488633|CIAO1	ENSG00000144021|ENST00000488633|CIAO1	MULTI-SECPEP	A375_MHC_IP_R1	1	427.3133239746094	3	426.579034	1276.71527	-0.065748	-2.8047E-05	0.15085	6.4351E-05	0.085106	3.6304E-05	426.57908221035143	31.609	0.71211	31.609	31.363	32.075	0					45	13	5	0	0	0	0.010874	1	10091	10091		124.95	104.08	1	79353000			45675	5455	33312	33581	44627	44627					0.08798411885368296
RTVRIWRQY	9	Unmodified	_RTVRIWRQY_					0	0	0		ENSG00000144021|ENST00000488633|CIAO1;ENST00000272402.2_1_2:96932116-96934407:+|nuORF	ENSG00000144021|ENST00000488633|CIAO1	ENSG00000144021|ENST00000488633|CIAO1	MULTI-MSMS	A375_MHC_IP_R2	2	426.9786376953125	3	426.579034	1276.71527	-0.20095	-8.5719E-05	-0.35646	-0.00015206	-0.55741	-0.00023778	426.5788788617909	30.672	0.75766	31.39	31.114	31.872	0.71857					45	14	5	0	0	0	0.0028938	1	10756	10756		143.21	113.93	1	92963000			45676	5455	33312	33581	44628	44628					0.08798411885368296
RTVTPLRW	8	Unmodified	_RTVTPLRW_					0	0	0		nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2;HELZ2|p.D2407Afs*38|1|0.4|ENSG00000130589|chr20:63560856-63560856|T/-|frameshift_variant	nc|ENSG00000130589|Q9BYK8|HELZ2	nc|ENSG00000130589|Q9BYK8|HELZ2	MULTI-MSMS	A375_MHC_IP_R2	2	515.203125	2	514.803626	1027.5927	-0.74949	-0.00038584	-0.35334	-0.0001819	-1.1028	-0.00056774	514.8033995091286	44.394	0.50663	45.163	44.934	45.441	0.7691					16	9	2	0	0	0	0.7496	1	16564	16564		20.415	2.2682	1	6312100			45677	14599	33313	33582	44629	44629					0.08000575153960199
RTVYFSEQW	9	Unmodified	_RTVYFSEQW_					0	0	0		ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-MSMS	A375_MHC_IP_R1	1	608.6931762695312	2	608.293288	1214.57202	-0.20179	-0.00012275	0.34006	0.00020686	0.13827	8.4112E-05	608.7956594850915	72.567	0.76031	72.567	72.271	73.031	0					36	14	4	0	0	0	0.12748	1	26385	26385		45.74	16.658	1	4597600			45678	4966	33314	33583	44630	44630					-0.026680600163899726
RTVYFSEQW	9	Unmodified	_RTVYFSEQW_					0	0	0		ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-SECPEP	A375_MHC_IP_R2	2	608.6929321289062	2	608.293288	1214.57202	-0.71775	-0.0004366	0.36179	0.00022008	-0.35596	-0.00021653	608.7952715454213	71.807	0.70724	72.541	72.314	73.021	0.73421					19	13	2	0	0	0	0.25548	1	27249	27249		53.404	17.277	1	6519400			45679	4966	33314	33583	44631	44631					-0.026680600163899726
RTWGESLR	8	Unmodified	_RTWGESLR_					0	0	0			REV__ENST00000370631.3_1_10:99400461-99400521:+|nuORF	REV__ENST00000370631.3_1_10:99400461-99400521:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	503.6672058105469	2	502.76724	1003.51993	-0.58283	-0.00029303	1.3701	0.00068884	0.78727	0.00039582	503.2685424581173	86.351	0.96252	86.351	85.717	86.679	0					32	18	3	0	0	0	0.77643	1	31547	31547		7.9102	0	1	3947800	+		45680	24034	33315	33584	44632	44632					0.0183082136052235
RTWHPEHFF	9	Unmodified	_RTWHPEHFF_					0	0	0		nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;nc|ENSG00000089159|P49023-3|PXN;ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-4|PXN;ENST00000323871.9_2_12:120650119-120654597:-|nuORF	nc|ENSG00000089159|P49023-2|PXN	nc|ENSG00000089159|P49023-2|PXN	MULTI-MSMS	A375_MHC_IP_R1	1	419.9369201660156	3	419.536835	1255.58868	0.63216	0.00026521	-0.68656	-0.00028804	-0.054401	-2.2823E-05	419.5365441745071	49.109	0.40306	49.109	48.933	49.336	0					12	7	2	0	0	0	0.46465	1	17389	17389		15.739	6.3555	1	1857100			45681	1917	33316	33585	44633	44633					-0.028895143397903666
RTWHVYRYFSY	11	Unmodified	_RTWHVYRYFSY_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MSMS	A375_MHC_IP_R1	1	526.6218872070312	3	526.59312	1576.75753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.402	1	86.402	85.902	86.902	0								0	0	0	0.16334	1	31683	31683		1.3296	0	1				45682	7673	33317	33586	44634	44634					-0.007776574969284411
RTWKKQRRLPL	11	Unmodified	_RTWKKQRRLPL_					0	0	0		ENST00000587366.1_1_18:55280911-55288994:-|nuORF	ENST00000587366.1_1_18:55280911-55288994:-|nuORF	ENST00000587366.1_1_18:55280911-55288994:-|nuORF	MSMS	A375_MHC_IP_R2	2	741.5947265625	2	741.462419	1480.91028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.62	1	144.65	144.15	145.15	0.024414								0	0	0	0.1636	1	56486	56486		0	0	1				45683	13745	33318	33587	44635	44635					0.1890658269035157
RTWKPPRW	8	Unmodified	_RTWKPPRW_					0	0	0		nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12;nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-SECPEP	A375_MHC_IP_R2	2	376.61383056640625	3	376.213804	1125.61958	-0.21843	-8.2175E-05	0.25046	9.4226E-05	0.032034	1.2052E-05	376.2137794476768	34.091	0.8604	34.844	34.146	35.006	0.75225					33	16	4	0	0	0	0.84541	1	12199	12199		40.239	27.197	1	4927600			45684	6941	33319	33588	44636	44636					0.06179683765117261
RTWKPPRW	8	Unmodified	_RTWKPPRW_					0	0	0		nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12;nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-MATCH	A375_MHC_IP_R1	1		3	376.213804	1125.61958	0.3326	0.00012513	-0.85472	-0.00032156	-0.52213	-0.00019643	376.2134521865553	34.835	0.50727	34.835	34.353	34.861	0	-0.0041674	-0.0010396	NaN	40.239	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3858100			45685	6941	33319	33588							0.06179683765117261
RTWLPWKR	8	Unmodified	_RTWLPWKR_					0	0	0		ENST00000599551.5_1_19:18683653-18683758:+|nuORF	ENST00000599551.5_1_19:18683653-18683758:+|nuORF	ENST00000599551.5_1_19:18683653-18683758:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	381.9573974609375	3	381.55757	1141.65088	0.41907	0.0001599	-1.1926	-0.00045503	-0.77349	-0.00029513	381.5571412924674	52.111	0.50776	52.111	51.829	52.336	0					18	9	3	0	0	0	0.77715	1	18554	18554		5.2969	0.24936	1	2162700			45686	13859	33320	33589	44637	44637					0.08572256799220668
RTWLPWKR	8	Unmodified	_RTWLPWKR_					0	0	0		ENST00000599551.5_1_19:18683653-18683758:+|nuORF	ENST00000599551.5_1_19:18683653-18683758:+|nuORF	ENST00000599551.5_1_19:18683653-18683758:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	381.55757	1141.65088	0.41907	0.0001599	-1.1926	-0.00045503	-0.77349	-0.00029513	381.5571412924674	52.111	0.50776	52.111	51.829	52.336	0	0.033675	-9.3357E-05	NaN	5.2969	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2162700			45687	13859	33320	33589							0.08572256799220668
RTWLPWKR	8	Unmodified	_RTWLPWKR_					0	0	0		ENST00000599551.5_1_19:18683653-18683758:+|nuORF	ENST00000599551.5_1_19:18683653-18683758:+|nuORF	ENST00000599551.5_1_19:18683653-18683758:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	381.55757	1141.65088	-0.21668	-8.2674E-05	-1.0774	-0.00041108	-1.294	-0.00049375	381.5571122477859	51.291	0.40606	52.043	51.864	52.27	0.75225	-0.033675	3.8506E-05	NaN	5.2969	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3121000			45688	13859	33320	33589							0.08572256799220668
RTWRKVDD	8	Unmodified	_RTWRKVDD_					0	0	0		ENST00000558554.5_1_15:78452444-78452513:+|nuORF	ENST00000558554.5_1_15:78452444-78452513:+|nuORF	ENST00000558554.5_1_15:78452444-78452513:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	358.6170654296875	3	359.192957	1074.55704	0.045015	1.6169E-05	-1.3359	-0.00047984	-1.2909	-0.00046367	359.1918963518585	24.826	0.25493	24.826	24.698	24.953	0					6	4	2	0	0	0	0.95423	1	7158	7158		9.3831	1.2276	1	1765300			45689	13468	33321	33590	44638	44638					0.022744929062810115
RTWSIRPPP	9	Unmodified	_RTWSIRPPP_					0	0	0			REV__PXDN|p.D1187Efs*3|1|0.08|ENSG00000130508|chr2:1648215-1648219|TCAGG/-|frameshift_variant	REV__PXDN|p.D1187Efs*3|1|0.08|ENSG00000130508|chr2:1648215-1648219|TCAGG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	370.94488525390625	3	370.545331	1108.61416	0.032625	1.2089E-05	-2.0728	-0.00076808	-2.0402	-0.00075599	370.5445450795567	20.023	0.45458	20.633	20.349	20.803	0.61029					15	8	2	0	0	0	0.78753	1	6212	6212		8.1555	4.559	1	1429900	+		45690	18543	33322	33591	44639	44639					0.06419960182665818
RTYDLYITY	9	Unmodified	_RTYDLYITY_					0	0	0		ENST00000467275.1_1_3:112256557-112257010:-|nuORF;nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF	ENST00000467275.1_1_3:112256557-112257010:-|nuORF	ENST00000467275.1_1_3:112256557-112257010:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	604.70361328125	2	604.303321	1206.59209	-0.17035	-0.00010294	-2.8212	-0.0017048	-2.9915	-0.0018078	604.3005682003698	78.802	0.8114	78.802	78.505	79.316	0					34	15	3	0	0	0	0.16945	1	28729	28729		40.239	7.9337	1	9907800			45691	5522	33323	33592	44640	44640					-0.0029430907643472892
RTYESKEEARW	11	Unmodified	_RTYESKEEARW_					0	0	0		ENSG00000174080|ENST00000310325|CTSF;ENST00000527141.5_1_11:66331945-66334941:-|nuORF	ENSG00000174080|ENST00000310325|CTSF	ENSG00000174080|ENST00000310325|CTSF	MULTI-MSMS	A375_MHC_IP_R1	1	485.97198486328125	3	485.572274	1453.69499	-0.24439	-0.00011867	-0.10858	-5.2723E-05	-0.35297	-0.00017139	485.57218974374535	20.076	0.45605	20.076	19.776	20.232	0					21	8	3	0	0	0	0.00037325	1	5072	5072		105.38	84.513	1	7575600			45692	7853	33324	33593	44641	44641					-0.013708483557593354
RTYESKEEARW	11	Unmodified	_RTYESKEEARW_					0	0	0		ENSG00000174080|ENST00000310325|CTSF;ENST00000527141.5_1_11:66331945-66334941:-|nuORF	ENSG00000174080|ENST00000310325|CTSF	ENSG00000174080|ENST00000310325|CTSF	MULTI-MSMS	A375_MHC_IP_R2	2	485.9718017578125	3	485.572274	1453.69499	-0.8735	-0.00042415	-0.087658	-4.2564E-05	-0.96116	-0.00046671	485.57216531263106	19.056	0.40163	19.659	19.533	19.935	0.60308					16	7	4	0	0	0	0.1082	1	5816	5816		51.957	47.84	1	12435000			45693	7853	33324	33593	44642	44642					-0.013708483557593354
RTYLDMNRF	9	Unmodified	_RTYLDMNRF_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-MSMS	A375_MHC_IP_R1	1	608.7003784179688	2	608.30059	1214.58663	-0.11536	-7.0176E-05	-0.5839	-0.00035519	-0.69927	-0.00042536	608.3002322959497	54.073	0.55443	54.073	53.861	54.415	0					17	10	2	0	0	0	0.54799	1	19315	19315		17.443	4.4002	1	2935100			45694	2487	33325	33594	44643	44643					-0.012083111399078916
RTYLDMNRF	9	Unmodified	_RTYLDMNRF_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-MSMS	A375_MHC_IP_R2	2	608.7008666992188	2	608.30059	1214.58663	-1.026	-0.00062413	0.23807	0.00014482	-0.78794	-0.00047931	608.3007062605477	53.32	0.45906	54.071	53.739	54.198	0.75105					13	8	2	0	0	0	0.41856	1	20111	20111		23.801	9.895	1	3184500			45695	2487	33325	33594	44644	44644					-0.012083111399078916
RTYMFKRKIFL	11	Unmodified	_RTYMFKRKIFL_					0	0	0		tr|U7SL85|U7SL85_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02014PE=4SV=1	tr|U7SL85|U7SL85_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02014PE=4SV=1	tr|U7SL85|U7SL85_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02014PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	752.33544921875	2	751.936857	1501.85916	-0.68604	-0.00051586	-0.73625	-0.00055362	-1.4223	-0.0010695	751.9362462517358	143.08	0.50529	143.11	142.79	143.29	0.030731					16	9	2	0	0	0	0.73891	1	55935	55935		1.1933	1.1933	1	1502800			45696	29495	33326	33595	44645	44645					0.12830497601294155
RTYMFKRKIFL	11	Unmodified	_RTYMFKRKIFL_					0	0	0		tr|U7SL85|U7SL85_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02014PE=4SV=1	tr|U7SL85|U7SL85_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02014PE=4SV=1	tr|U7SL85|U7SL85_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02014PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	751.936857	1501.85916	-0.68604	-0.00051586	-0.73625	-0.00055362	-1.4223	-0.0010695	751.9362462517358	143.08	0.50529	143.11	142.79	143.29	0.030731	-0.020393	4.8675E-05	NaN	1.1933	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1502800			45697	29495	33326	33595							0.12830497601294155
RTYPEHNFF	9	Unmodified	_RTYPEHNFF_					0	0	0		nc|ENSG00000067208|O60447|EVI5;nc|ENSG00000067208|O60447-2|EVI5;ENSG00000067208|ENST00000684568|EVI5	nc|ENSG00000067208|O60447|EVI5	nc|ENSG00000067208|O60447|EVI5	MULTI-MSMS	A375_MHC_IP_R2	2	606.1851806640625	2	605.78563	1209.55671	-0.40509	-0.0002454	0.0381	2.308E-05	-0.36699	-0.00022232	605.7855823483744	41.916	0.46056	42.691	42.401	42.862	0.77451					14	8	2	0	0	0	0.066859	1	15559	15559		57.722	26.454	1	3432000			45698	1432	33327	33596	44646	44646					-0.03968926813604412
RVAALRLA	8	Unmodified	_RVAALRLA_					0	0	0		ENST00000490175.5_1_20:17923003-17949420:-|nuORF	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	435.6872863769531	2	435.287611	868.56067	-0.071242	-3.1011E-05	-0.10069	-4.383E-05	-0.17193	-7.4841E-05	435.2875509179224	45.966	0.45663	45.966	45.789	46.245	0					19	8	3	0	0	0	0.77717	1	16095	16095		5.2307	0	1	5741000			45699	12644	33328	33597	44647	44647					0.12113207470770249
RVADRLYGV	9	Unmodified	_RVADRLYGV_					0	0	0		ENST00000473417.5_1_3:125188296-125239016:-|nuORF;ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENSG00000114520|ENST00000251775|SNX4;nc|ENSG00000114520|O95219-2|SNX4	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	525.1976928710938	2	524.79854	1047.58253	-0.76283	-0.00040033	-0.30239	-0.0001587	-1.0652	-0.00055903	524.7983380241486	36.735	0.45464	36.735	36.541	36.996	0					15	8	2	0	0	0	0.74169	1	12321	12321		16.149	4.6544	1	6144500			45700	3227	33329	33598	44648	44648					0.060639674286903755
RVADYIVKV	9	Unmodified	_RVADYIVKV_					0	0	0		ENSG00000145248|ENST00000273861|SLC10A4	ENSG00000145248|ENST00000273861|SLC10A4	ENSG00000145248|ENST00000273861|SLC10A4	MULTI-SECPEP	A375_MHC_IP_R1	1	532.2186889648438	2	531.818941	1061.62333	-0.49244	-0.00026189	0.42233	0.0002246	-0.070113	-3.7287E-05	531.8190713851915	51.956	0.50928	51.956	51.728	52.237	0					19	9	3	0	0	0	0.71071	1	18463	18463		19.362	7.8672	1	6430700			45701	5549	33330	33599	44649	44649					0.09498308748311501
RVADYIVKV	9	Unmodified	_RVADYIVKV_					0	0	0		ENSG00000145248|ENST00000273861|SLC10A4	ENSG00000145248|ENST00000273861|SLC10A4	ENSG00000145248|ENST00000273861|SLC10A4	MULTI-SECPEP	A375_MHC_IP_R2	2	532.2185668945312	2	531.818941	1061.62333	-0.78779	-0.00041896	-0.20856	-0.00011092	-0.99635	-0.00052988	531.8188181484729	51.072	0.45517	51.826	51.615	52.07	0.75406					16	8	3	0	0	0	0.40377	1	19223	19223		28.495	8.08	1	4184500			45702	5549	33330	33599	44650	44650					0.09498308748311501
RVAFSLEPTS	10	Unmodified	_RVAFSLEPTS_					0	0	0			REV__tr|U7SJ06|U7SJ06_FUSNUPhosphoglucomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02050PE=3SV=1	REV__tr|U7SJ06|U7SJ06_FUSNUPhosphoglucomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02050PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	369.6051025390625	3	369.532868	1105.57677	0.40607	0.00015005	-0.29208	-0.00010793	0.11399	4.2123E-05	369.8670370737832	43.904	1.1737	43.904	43.603	44.777	0					49	22	3	0	0	0	0.92832	1	15611	15611		12.175	4.2293	1	2613600	+		45703	28221	33331	33600	44651	44651					0.028208241263882883
RVAGFNPAL	9	Unmodified	_RVAGFNPAL_					0	0	0		nc|ENSG00000169905|Q9H496|TOR1AIP2	nc|ENSG00000169905|Q9H496|TOR1AIP2	nc|ENSG00000169905|Q9H496|TOR1AIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	473.16912841796875	2	472.769252	943.52395	-0.33548	-0.00015861	0.01152	5.4464E-06	-0.32396	-0.00015316	472.76918419023843	56.624	0.5597	56.624	56.295	56.855	0					16	10	2	0	0	0	0.39388	1	20316	20316		39.957	3.9131	1	3200200			45704	14760	33332	33601	44652	44652					0.049929108542073664
RVAGFNPAL	9	Unmodified	_RVAGFNPAL_					0	0	0		nc|ENSG00000169905|Q9H496|TOR1AIP2	nc|ENSG00000169905|Q9H496|TOR1AIP2	nc|ENSG00000169905|Q9H496|TOR1AIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	473.16876220703125	2	472.769252	943.52395	-0.6673	-0.00031548	-0.096739	-4.5735E-05	-0.76404	-0.00036121	472.7691373979608	55.686	0.55894	56.437	56.135	56.694	0.75047					21	10	3	0	0	0	0.50702	1	21044	21044		32.305	9.1571	1	2568900			45705	14760	33332	33601	44653	44653					0.049929108542073664
RVAGPNGSW	9	Unmodified	_RVAGPNGSW_					0	0	0		nc|ENSG00000147041|Q8TDW5-2|SYTL5;ENSG00000147041|ENST00000297875|SYTL5	nc|ENSG00000147041|Q8TDW5-2|SYTL5	nc|ENSG00000147041|Q8TDW5-2|SYTL5	MULTI-MSMS	A375_MHC_IP_R1	1	472.6406555175781	2	472.240858	942.467164	-0.42252	-0.00019953	1.4592	0.00068909	1.0367	0.00048956	472.2408313513559	31.88	0.66276	31.88	31.465	32.127	0					22	12	3	0	0	0	0.064406	1	10271	10271		58.679	12.658	1	4578200			45706	5650	33333	33602	44654	44654					-0.006371367022893537
RVAGPNGSW	9	Unmodified	_RVAGPNGSW_					0	0	0		nc|ENSG00000147041|Q8TDW5-2|SYTL5;ENSG00000147041|ENST00000297875|SYTL5	nc|ENSG00000147041|Q8TDW5-2|SYTL5	nc|ENSG00000147041|Q8TDW5-2|SYTL5	MULTI-MSMS	A375_MHC_IP_R2	2	472.6404724121094	2	472.240858	942.467164	-0.60921	-0.00028769	1.2613	0.00059562	0.65205	0.00030792	472.2408783198757	31.187	0.50909	31.905	31.618	32.128	0.71857					21	9	3	0	0	0	0.070818	1	11019	11019		56.177	20.133	1	4074300			45707	5650	33333	33602	44655	44655					-0.006371367022893537
RVAHFGYHW	9	Unmodified	_RVAHFGYHW_					0	0	0		ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	MULTI-MSMS	A375_MHC_IP_R2	2	391.9296569824219	3	391.529792	1171.56755	-0.6594	-0.00025817	0.55929	0.00021898	-0.10011	-3.9195E-05	391.52996778581587	37.303	0.56154	38.074	37.816	38.378	0.7709					24	10	3	0	0	0	0.010171	1	13633	13633		96.111	96.111	1	5926300			45708	3954	33334	33603	44656	44656					-0.011374796486506966
RVAHFGYHW	9	Unmodified	_RVAHFGYHW_					0	0	0		ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	MULTI-MATCH	A375_MHC_IP_R1	1		3	391.529792	1171.56755	-0.19263	-7.5419E-05	0.77943	0.00030517	0.5868	0.00022975	391.53009843716234	38.293	0.56095	38.293	38.118	38.679	0	0.10959	0.00010457	NaN	96.111	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9452900			45709	3954	33334	33603							-0.011374796486506966
RVALRRHRLAL	11	Unmodified	_RVALRRHRLAL_					0	0	0		ENST00000327026.7_1_17:80112845-80113109:-|nuORF	ENST00000327026.7_1_17:80112845-80113109:-|nuORF	ENST00000327026.7_1_17:80112845-80113109:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	681.3421020507812	2	680.941654	1359.86875	-0.44867	-0.00030552	0.097505	6.6396E-05	-0.35116	-0.00023912	681.4429343912792	143.64	1.1482	143.67	142.93	144.08	0.024414					25	22	2	0	0	0	0.73934	1	56087	56087		0	0	1	921380			45710	10738	33335	33604	44657	44657					0.20321446721709435
RVALRRHRLAL	11	Unmodified	_RVALRRHRLAL_					0	0	0		ENST00000327026.7_1_17:80112845-80113109:-|nuORF	ENST00000327026.7_1_17:80112845-80113109:-|nuORF	ENST00000327026.7_1_17:80112845-80113109:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	681.3414306640625	2	680.941654	1359.86875	-0.44839	-0.00030533	0.58975	0.00040158	0.14136	9.6258E-05	680.9422401278582	144.27	0.44608	144.29	144.08	144.53	0.024429					16	9	2	0	0	0	0.73934	1	56291	56291		0	0	1	334160			45711	10738	33335	33604	44658	44658					0.20321446721709435
RVAPTANIF	9	Unmodified	_RVAPTANIF_					0	0	0		ENSG00000164815|ENST00000297431|ORC5;ENST00000477223.1_1_7:103767297-103805736:-|nuORF	ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	MULTI-SECPEP	A375_MHC_IP_R1	1	495.1341857910156	2	494.782359	987.550165	-0.44541	-0.00022038	-1.2359	-0.00061148	-1.6813	-0.00083187	494.78233308342675	58.729	0.6113	58.729	58.379	58.99	0					20	11	3	0	0	0	0.49205	1	21104	21104		34.402	5.3201	1	2007000			45712	6882	33336	33605	44659	44659					0.0558918002569726
RVAPTANIF	9	Unmodified	_RVAPTANIF_					0	0	0		ENSG00000164815|ENST00000297431|ORC5;ENST00000477223.1_1_7:103767297-103805736:-|nuORF	ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	MULTI-SECPEP	A375_MHC_IP_R2	2	495.1815490722656	2	494.782359	987.550165	-0.76305	-0.00037754	-0.48117	-0.00023808	-1.2442	-0.00061562	494.78186282830575	57.767	0.45579	58.516	58.323	58.779	0.74894					13	8	2	0	0	0	0.59098	1	21847	21847		27.629	4.8925	1	1496100			45713	6882	33336	33605	44660	44660					0.0558918002569726
RVAQLLERW	9	Unmodified	_RVAQLLERW_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R1	1	391.29669189453125	3	390.896252	1169.66693	0.18988	7.4223E-05	-0.044858	-1.7535E-05	0.14502	5.6689E-05	390.89618896652337	63.492	0.51237	63.492	63.274	63.786	0					24	9	3	0	0	0	0.10495	1	22952	22952		65.474	38.25	1	4229900			45714	14788	33337	33606	44661	44661					0.08887918245477522
RVAQLLERW	9	Unmodified	_RVAQLLERW_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R2	2	391.2961730957031	3	390.896252	1169.66693	-0.28625	-0.00011189	0.25988	0.00010158	-0.026374	-1.031E-05	390.89636100708077	62.384	0.60999	63.126	62.874	63.484	0.74263					26	11	3	0	0	0	0.076731	1	23636	23636		80.676	48.639	1	5767900			45715	14788	33337	33606	44662	44662					0.08887918245477522
RVAQLLERW	9	Unmodified	_RVAQLLERW_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R2	2	586.2400512695312	2	585.840739	1169.66693	-0.63135	-0.00036987	0.16149	9.461E-05	-0.46986	-0.00027526	585.8407917617569	62.462	0.66048	63.205	62.824	63.484	0.74263					28	12	3	0	0	0	0.58126	1	23641	23641		40.239	19.825	1	9198100			45716	14788	33337	33606	44663	44663					0.08887918245477522
RVCKMLRPV	9	Unmodified	_RVCKMLRPV_					0	0	0			REV__ENSG00000187961|ENST00000338591|KLHL17	REV__ENSG00000187961|ENST00000338591|KLHL17	MULTI-SECPEP	A375_MHC_IP_R2	2	368.6327819824219	3	367.884301	1100.63107	-0.086637	-3.1872E-05	2.8248	0.0010392	2.7382	0.0010073	367.8857017817798	24.212	0.15178	24.855	24.755	24.907	0.64368					4	2	2	0	0	0	0.75466	1	7917	7917		4.897	2.6142	1	773520	+		45717	22061	33338	33607	44664	44664					0.08478421472614173
RVCMTNEGHPW	11	Unmodified	_RVCMTNEGHPW_					0	0	0		ENSG00000169154|ENST00000307599|GOT1L1	ENSG00000169154|ENST00000307599|GOT1L1	ENSG00000169154|ENST00000307599|GOT1L1	MULTI-SECPEP	A375_MHC_IP_R2	2	444.2726135253906	3	443.865747	1328.57541	-0.67557	-0.00029986	0.84743	0.00037615	0.17186	7.6283E-05	444.2004798703128	23.374	0.1513	24.005	23.878	24.029	0.63014					4	2	2	0	0	0	0.99133	1	7452	7452		5.8681	1.462	1	2041000			45718	7385	33339	33608	44665	44665					-0.07573456505679133
RVDDIFSDLY	10	Unmodified	_RVDDIFSDLY_					0	0	0		ENSG00000198218|ENST00000395443|QRICH1;ENST00000479449.1_1_3:49070551-49094468:-|nuORF	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MULTI-SECPEP	A375_MHC_IP_R1	1	622.2034912109375	2	621.803685	1241.59282	-0.31587	-0.00019641	1.6649	0.0010352	1.349	0.00083883	621.8033951140164	110.64	0.5108	110.64	110.39	110.9	0					26	9	5	0	0	0	0.76455	1	40563	40563		37.075	27.692	1	3816800			45719	9244	33340	33609	44666	44666					-0.018315144273856276
RVDDIFSDLY	10	Unmodified	_RVDDIFSDLY_					0	0	0		ENSG00000198218|ENST00000395443|QRICH1;ENST00000479449.1_1_3:49070551-49094468:-|nuORF	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MULTI-MSMS	A375_MHC_IP_R2	2	622.203369140625	2	621.803685	1241.59282	-0.59721	-0.00037135	1.2108	0.0007529	0.61362	0.00038155	621.8037559636933	109.85	0.61246	110.59	110.33	110.95	0.74684					19	11	2	0	0	0	0.35113	1	41440	41440		37.075	14.338	1	3201600			45720	9244	33340	33609	44667	44667					-0.018315144273856276
RVDELLEKY	9	Unmodified	_RVDELLEKY_					0	0	0		ENST00000441170.1_1_4:118496255-118496735:-|nuORF;nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A	ENST00000441170.1_1_4:118496255-118496735:-|nuORF	ENST00000441170.1_1_4:118496255-118496735:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	583.2168579101562	2	582.816596	1163.61864	-0.2384	-0.00013895	0.043324	2.525E-05	-0.19508	-0.0001137	582.8165359535759	50.635	0.60903	50.635	50.357	50.966	0					29	11	4	0	0	0	0.43936	1	17922	17922		53.317	7.5768	1	12034000			45721	3796	33341	33610	44668	44668					0.043373798149104914
RVDELLEKY	9	Unmodified	_RVDELLEKY_					0	0	0		ENST00000441170.1_1_4:118496255-118496735:-|nuORF;nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A	ENST00000441170.1_1_4:118496255-118496735:-|nuORF	ENST00000441170.1_1_4:118496255-118496735:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	389.2802734375	3	388.880156	1163.61864	-0.41511	-0.00016143	0.63824	0.0002482	0.22313	8.6772E-05	388.8803511597831	49.768	0.40924	50.522	50.344	50.753	0.75406					11	7	2	0	0	0	0.52197	1	18739	18739		18.721	2.9826	1	2422800			45722	3796	33341	33610	44669	44669					0.043373798149104914
RVDELLEKY	9	Unmodified	_RVDELLEKY_					0	0	0		ENST00000441170.1_1_4:118496255-118496735:-|nuORF;nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A	ENST00000441170.1_1_4:118496255-118496735:-|nuORF	ENST00000441170.1_1_4:118496255-118496735:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	582.1687622070312	2	582.816596	1163.61864	-0.65531	-0.00038193	0.36607	0.00021335	-0.28924	-0.00016857	582.8168190181674	49.819	0.66092	50.573	50.294	50.955	0.75406					37	12	4	0	0	0	0.2733	1	18690	18690		61.09	7.6859	1	15893000			45723	3796	33341	33610	44670	44670					0.043373798149104914
RVDGALARWT	10	Unmodified	_RVDGALARWT_					0	0	0			REV__ENSG00000165661|ENST00000358701|QSOX2	REV__ENSG00000165661|ENST00000358701|QSOX2	MULTI-MSMS	A375_MHC_IP_R1	1	573.2142944335938	2	572.814722	1143.61489	-0.57095	-0.00032705	0.31372	0.0001797	-0.25723	-0.00014735	572.8148416156982	30.517	0.65683	30.517	30.2	30.857	0					24	12	2	0	0	0	0.70148	1	9664	9664		17.443	1.2935	1	4374200	+		45724	20608	33342	33611	44671	44671					0.04882754831692182
RVDGRMLHY	9	Oxidation (M)	_RVDGRM(Oxidation (M))LHY_		RVDGRM(1)LHY		RVDGRM(69)LHY	0	0	1		nc|ENSG00000110841|Q86W92-3|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	MULTI-MSMS	A375_MHC_IP_R1	1	388.597900390625	3	388.197713	1161.57131	0.55957	0.00021722	-0.44268	-0.00017185	0.11689	4.5376E-05	388.1976371136307	22.188	0.65986	22.188	21.86	22.52	0					36	12	4	0	0	0	0.037085	1	5917	5917		69.338	60.894	1	13439000			45725	14540	33343	33612	44672	44672		467			-0.0030117793708086538
RVDGRMLHY	9	Oxidation (M)	_RVDGRM(Oxidation (M))LHY_		RVDGRM(1)LHY		RVDGRM(51)LHY	0	0	1		nc|ENSG00000110841|Q86W92-3|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	MULTI-MSMS	A375_MHC_IP_R2	2	388.5977783203125	3	388.197713	1161.57131	-0.48944	-0.00019	0.37551	0.00014577	-0.11394	-4.423E-05	388.1978860454057	21.691	0.66355	22.311	22.081	22.744	0.61932					30	12	4	0	0	0	0.095445	1	6838	6838		51.488	43.044	1	12117000			45726	14540	33343	33612	44673	44673		467			-0.0030117793708086538
RVDGSKPIW	9	Unmodified	_RVDGSKPIW_					0	0	0		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	MULTI-MSMS	A375_MHC_IP_R1	1	529.6925659179688	2	529.293091	1056.57163	-0.3728	-0.00019732	-0.27901	-0.00014768	-0.65181	-0.000345	529.2928779666294	35.497	0.61157	35.497	35.218	35.83	0					18	11	2	0	0	0	0.04447	1	11792	11792		66.457	12.624	1	9622200			45727	2789	33344	33613	44674	44674					0.04560565054430299
RVDGSKPIWKY	11	Unmodified	_RVDGSKPIWKY_					0	0	0		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	MULTI-MSMS	A375_MHC_IP_R2	2	450.1585998535156	3	450.250583	1347.72992	-0.59007	-0.00026568	0.026652	1.2E-05	-0.56342	-0.00025368	450.2508963541954	34.266	0.30736	35.018	34.904	35.211	0.75225					7	5	2	0	0	0	0.68694	1	12372	12372		10.016	2.9792	1	2023500			45728	2789	33345	33614	44675	44675					0.0699643924283464
RVDPAKGLFY	10	Unmodified	_RVDPAKGLFY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	A375_MHC_IP_R1	1	389.61712646484375	3	389.216991	1164.62914	0.24646	9.5927E-05	-0.11625	-4.5246E-05	0.13021	5.0681E-05	389.21694028823134	57.076	1.2229	57.076	56.65	57.873	0					66	23	5	0	0	0	0.15548	1	20391	20391		53.798	40.279	1	46506000			45729	5456	33346	33615	44676	44676					0.053414072599935025
RVDPAKGLFY	10	Unmodified	_RVDPAKGLFY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-SECPEP	A375_MHC_IP_R1	1	583.7218627929688	2	583.321848	1164.62914	-0.17482	-0.00010198	-0.18518	-0.00010802	-0.36	-0.00021	583.3217486470878	57.045	0.66286	57.045	56.701	57.364	0					39	12	4	0	0	0	0.58566	1	20401	20401		53.317	36.204	1	22530000			45730	5456	33346	33615	44677	44677					0.053414072599935025
RVDPAKGLFY	10	Unmodified	_RVDPAKGLFY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	A375_MHC_IP_R2	2	389.61700439453125	3	389.216991	1164.62914	-0.4124	-0.00016051	0.14692	5.7184E-05	-0.26547	-0.00010333	389.2170338888773	56.171	1.5784	56.921	56.237	57.815	0.75015					72	30	5	0	0	0	0.22146	1	21152	21152		47.053	34.878	1	61509000			45731	5456	33346	33615	44678	44678					0.053414072599935025
RVDPAKGLFY	10	Unmodified	_RVDPAKGLFY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-SECPEP	A375_MHC_IP_R2	2	583.7214965820312	2	583.321848	1164.62914	-0.6679	-0.0003896	-0.095559	-5.5742E-05	-0.76346	-0.00044534	583.3217612321715	56.173	0.71547	56.923	56.54	57.255	0.75015					40	13	4	0	0	0	0.58566	1	21174	21174		53.317	43.243	1	30857000			45732	5456	33346	33615	44679	44679					0.053414072599935025
RVDPAKGLFYF	11	Unmodified	_RVDPAKGLFYF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	A375_MHC_IP_R1	1	438.6398010253906	3	438.239796	1311.69756	-0.19188	-8.4089E-05	0.13915	6.098E-05	-0.052733	-2.311E-05	438.23982331140894	89.799	1.1653	89.799	89.476	90.641	0					55	22	4	0	0	0	0.38304	1	32940	32940		40.317	21.977	1	21238000			45733	5456	33347	33616	44680	44680					0.05417651839843529
RVDPAKGLFYF	11	Unmodified	_RVDPAKGLFYF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	A375_MHC_IP_R2	2	438.639404296875	3	438.239796	1311.69756	-0.2295	-0.00010057	-0.21478	-9.4125E-05	-0.44427	-0.0001947	438.2396415660221	88.978	1.0598	89.71	89.331	90.391	0.7318					59	20	5	0	0	0	0.44059	1	33808	33808		35.793	17.454	1	18328000			45734	5456	33347	33616	44681	44681					0.05417651839843529
RVDPAKGLFYF	11	Unmodified	_RVDPAKGLFYF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	A375_MHC_IP_R2	2	657.7573852539062	2	656.856055	1311.69756	-0.82077	-0.00053913	0.26492	0.00017401	-0.55585	-0.00036511	656.8563665381851	88.964	0.65453	89.696	89.331	89.985	0.7318					27	12	3	0	0	0	0.48226	1	33830	33830		32.898	14.751	1	5406200			45735	5456	33347	33616	44682	44682					0.05417651839843529
RVDPDVAQHW	10	Unmodified	_RVDPDVAQHW_					0	0	0		nc|ENSG00000168256|Q9NYR9-3|NKIRAS2;nc|ENSG00000168256|Q9NYR9-2|NKIRAS2;ENSG00000168256|ENST00000393885|NKIRAS2	nc|ENSG00000168256|Q9NYR9-3|NKIRAS2	nc|ENSG00000168256|Q9NYR9-3|NKIRAS2	MULTI-MSMS	A375_MHC_IP_R1	1	612.20166015625	2	611.801811	1221.58907	0.0044772	2.7391E-06	-0.60337	-0.00036914	-0.59889	-0.0003664	611.8016950449995	39.042	0.81416	39.042	38.577	39.391	0					39	15	4	0	0	0	2.5088E-05	2	13281	13281;13390		154.75	118.71	1	32515000			45736	7278	33348	33617	44683;44684	44683					-0.01286139410603937
RVDPDVAQHW	10	Unmodified	_RVDPDVAQHW_					0	0	0		nc|ENSG00000168256|Q9NYR9-3|NKIRAS2;nc|ENSG00000168256|Q9NYR9-2|NKIRAS2;ENSG00000168256|ENST00000393885|NKIRAS2	nc|ENSG00000168256|Q9NYR9-3|NKIRAS2	nc|ENSG00000168256|Q9NYR9-3|NKIRAS2	MULTI-SECPEP	A375_MHC_IP_R1	1	408.60369873046875	3	408.203633	1221.58907	0.17709	7.2289E-05	0.32961	0.00013455	0.5067	0.00020683	408.20373320262104	39.066	0.40633	39.066	38.832	39.238	0					16	7	3	0	0	0	0.60589	1	13325	13325		21.241	21.241	1	3193900			45737	7278	33348	33617	44685	44685					-0.01286139410603937
RVDPDVAQHW	10	Unmodified	_RVDPDVAQHW_					0	0	0		nc|ENSG00000168256|Q9NYR9-3|NKIRAS2;nc|ENSG00000168256|Q9NYR9-2|NKIRAS2;ENSG00000168256|ENST00000393885|NKIRAS2	nc|ENSG00000168256|Q9NYR9-3|NKIRAS2	nc|ENSG00000168256|Q9NYR9-3|NKIRAS2	MULTI-MSMS	A375_MHC_IP_R2	2	612.2015991210938	2	611.801811	1221.58907	-0.8585	-0.00052523	0.14534	8.8919E-05	-0.71316	-0.00043631	611.8018702910023	38.296	0.55945	39.071	38.791	39.351	0.77451					18	10	2	0	0	0	0.0014869	1	14043	14043		143.21	114.73	1	29601000			45738	7278	33348	33617	44686	44686					-0.01286139410603937
RVDPDVAQHW	10	Unmodified	_RVDPDVAQHW_					0	0	0		nc|ENSG00000168256|Q9NYR9-3|NKIRAS2;nc|ENSG00000168256|Q9NYR9-2|NKIRAS2;ENSG00000168256|ENST00000393885|NKIRAS2	nc|ENSG00000168256|Q9NYR9-3|NKIRAS2	nc|ENSG00000168256|Q9NYR9-3|NKIRAS2	MULTI-SECPEP	A375_MHC_IP_R2	2	408.65283203125	3	408.203633	1221.58907	-0.32343	-0.00013203	0.24165	9.8642E-05	-0.081782	-3.3384E-05	408.20373399274814	38.319	0.45909	39.093	38.791	39.25	0.77451					14	8	2	0	0	0	0.62001	1	14044	14044		14.838	14.838	1	4316900			45739	7278	33348	33617	44687	44687					-0.01286139410603937
RVDPIGPLSY	10	Unmodified	_RVDPIGPLSY_					0	0	0		ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;DMXL2|p.T2022Hfs*16|1|0.5|ENSG00000104093|chr15:51481042-51481042|T/-|frameshift_variant;DMXL2|p.I1754Lfs*19|1|0.32|ENSG00000104093|chr15:51486296-51486296|A/-|frameshift_variant;nc|ENSG00000104093|Q8TDJ6-2|DMXL2	ENSG00000104093|ENST00000560891|DMXL2	ENSG00000104093|ENST00000560891|DMXL2	MULTI-SECPEP	A375_MHC_IP_R1	1	559.2056274414062	2	558.806031	1115.59751	-0.51438	-0.00028744	0.22356	0.00012493	-0.29082	-0.00016251	558.8061293038166	73.823	0.91202	73.823	73.488	74.4	0					49	17	4	0	0	0	0.28705	1	26848	26848		75.571	45.73	1	21781000			45740	2485	33349	33618	44688	44688					0.04433414506047484
RVDPIGPLSY	10	Unmodified	_RVDPIGPLSY_					0	0	0		ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;DMXL2|p.T2022Hfs*16|1|0.5|ENSG00000104093|chr15:51481042-51481042|T/-|frameshift_variant;DMXL2|p.I1754Lfs*19|1|0.32|ENSG00000104093|chr15:51486296-51486296|A/-|frameshift_variant;nc|ENSG00000104093|Q8TDJ6-2|DMXL2	ENSG00000104093|ENST00000560891|DMXL2	ENSG00000104093|ENST00000560891|DMXL2	MULTI-SECPEP	A375_MHC_IP_R2	2	559.2060546875	2	558.806031	1115.59751	-0.70328	-0.000393	0.38617	0.0002158	-0.31711	-0.0001772	558.8061679661887	73.014	0.9168	73.749	73.48	74.396	0.73541					49	17	4	0	0	0	0.15514	1	27685	27685		93.938	64.857	1	21618000			45741	2485	33349	33618	44689	44689					0.04433414506047484
RVDPNGFFLY	10	Unmodified	_RVDPNGFFLY_					0	0	0		ENSG00000149782|ENST00000279230|PLCB3	ENSG00000149782|ENST00000279230|PLCB3	ENSG00000149782|ENST00000279230|PLCB3	MULTI-SECPEP	A375_MHC_IP_R1	1	614.7111206054688	2	614.31148	1226.60841	-0.27683	-0.00017006	-0.32141	-0.00019745	-0.59823	-0.0003675	614.3112921642319	101.55	0.86038	101.55	101.14	102	0					34	16	3	0	0	0	0.86335	1	37330	37330		27.223	9.0769	1	2518000			45742	5830	33350	33619	44690	44690					0.004168168803289518
RVDPNGSRYLL	11	Unmodified	_RVDPNGSRYLL_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	A375_MHC_IP_R1	1	430.9703674316406	3	430.570204	1288.68878	0.43066	0.00018543	-0.58774	-0.00025306	-0.15708	-6.7635E-05	430.5699528553795	44.868	0.76134	44.868	44.523	45.284	0					45	14	4	0	0	0	0.013697	1	15635	15635		70.524	52.952	1	31970000			45743	7247	33351	33620	44691	44691					0.05598678203386953
RVDPNGSRYLL	11	Unmodified	_RVDPNGSRYLL_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-SECPEP	A375_MHC_IP_R1	1	645.7515258789062	2	645.351668	1288.68878	0.1634	0.00010545	-0.72361	-0.00046698	-0.56021	-0.00036153	645.3511625095022	44.885	0.60807	44.885	44.626	45.234	0					31	11	4	0	0	0	0.69618	1	15657	15657		42.835	42.835	1	14009000			45744	7247	33351	33620	44692	44692					0.05598678203386953
RVDPNGSRYLL	11	Unmodified	_RVDPNGSRYLL_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	A375_MHC_IP_R2	2	430.9700622558594	3	430.570204	1288.68878	-0.034907	-1.503E-05	-0.53146	-0.00022883	-0.56637	-0.00024386	430.56999325599395	43.984	0.96026	44.753	44.278	45.239	0.76909					52	18	6	0	0	0	0.00033207	2	16373	16373;16472		93.336	66.207	1	35807000			45745	7247	33351	33620	44693;44694	44693					0.05598678203386953
RVDPNGSRYLL	11	Unmodified	_RVDPNGSRYLL_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-SECPEP	A375_MHC_IP_R2	2	645.7507934570312	2	645.351668	1288.68878	-0.49645	-0.00032038	-0.31382	-0.00020253	-0.81027	-0.00052291	645.3514352798837	43.98	0.6055	44.749	44.43	45.035	0.7691					29	11	4	0	0	0	0.92254	1	16395	16395		23.801	14.418	1	13265000			45746	7247	33351	33620	44695	44695					0.05598678203386953
RVDQSAVGFEY	11	Unmodified	_RVDQSAVGFEY_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;ENST00000415461.2_1_11:70253665-70266006:+|nuORF;ENST00000525276.1_1_11:70260740-70261888:+|nuORF	nc|ENSG00000085733|Q14247-2|CTTN	nc|ENSG00000085733|Q14247-2|CTTN	MULTI-MSMS	A375_MHC_IP_R1	1	636.20751953125	2	635.806759	1269.59897	-0.74942	-0.00047649	0.36177	0.00023001	-0.38766	-0.00024647	635.807037609376	58.537	0.55843	58.537	58.228	58.786	0					29	10	4	0	0	0	0.011476	1	21001	21001		92.201	55.695	1	5674500			45747	14491	33352	33621	44696	44696					-0.025049961958302447
RVDQSAVGFEY	11	Unmodified	_RVDQSAVGFEY_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;ENST00000415461.2_1_11:70253665-70266006:+|nuORF;ENST00000525276.1_1_11:70260740-70261888:+|nuORF	nc|ENSG00000085733|Q14247-2|CTTN	nc|ENSG00000085733|Q14247-2|CTTN	MULTI-MSMS	A375_MHC_IP_R2	2	636.2061157226562	2	635.806759	1269.59897	-1.0676	-0.00067882	-0.0691	-4.3934E-05	-1.1367	-0.00072275	635.806657025237	57.792	0.55748	58.54	58.272	58.829	0.74894					22	10	3	0	0	0	0.074117	1	21831	21831		74.772	50.751	1	4961000			45748	14491	33352	33621	44697	44697					-0.025049961958302447
RVEEAIHPV	9	Unmodified	_RVEEAIHPV_					0	0	0		ENST00000367590.8_1_1:180601192-180601402:+|nuORF	ENST00000367590.8_1_1:180601192-180601402:+|nuORF	ENST00000367590.8_1_1:180601192-180601402:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	525.6897583007812	2	525.290548	1048.56654	-0.79279	-0.00041645	0.1685	8.851E-05	-0.62429	-0.00032793	525.2904562466059	26.687	0.60478	26.687	26.373	26.978	0					27	11	3	0	0	0	0.14858	1	7970	7970		41.956	16.556	1	21264000			45749	11094	33353	33622	44698	44698					0.044202611917853574
RVEEAIHPV	9	Unmodified	_RVEEAIHPV_					0	0	0		ENST00000367590.8_1_1:180601192-180601402:+|nuORF	ENST00000367590.8_1_1:180601192-180601402:+|nuORF	ENST00000367590.8_1_1:180601192-180601402:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	525.6895751953125	2	525.290548	1048.56654	-0.92102	-0.0004838	-0.13653	-7.172E-05	-1.0576	-0.00055552	525.2904579238942	25.967	0.45839	26.627	26.449	26.907	0.65992					16	8	2	0	0	0	0.22013	1	8725	8725		36.506	14.916	1	20567000			45750	11094	33353	33622	44699	44699					0.044202611917853574
RVEHVQHVYL	10	Unmodified	_RVEHVQHVYL_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-SECPEP	A375_MHC_IP_R2	2	427.777587890625	3	427.235045	1278.6833	-0.50986	-0.00021783	0.048949	2.0913E-05	-0.46091	-0.00019692	427.235072457302	20.23	0.66011	20.841	20.399	21.059	0.61029					16	12	2	0	0	0	0.93232	1	6229	6229		10.899	6.7823	1	1265600			45751	947	33354	33623	44700	44700					0.05510999411580997
RVENIDKFYGI	11	Unmodified	_RVENIDKFYGI_					0	0	0		tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	451.68450927734375	3	451.910227	1352.70885	-0.18657	-8.4315E-05	-0.70045	-0.00031654	-0.88703	-0.00040086	451.9097888726047	61.56	0.30524	61.56	61.432	61.737	0					7	5	2	0	0	0	0.99482	1	22241	22241		6.2344	0	1	2075000			45752	29742	33355	33624	44701	44701					0.04660429143336842
RVEPNIKWF	9	Unmodified	_RVEPNIKWF_					0	0	0		ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	MULTI-SECPEP	A375_MHC_IP_R1	1	397.2890319824219	3	396.888986	1187.64513	0.20087	7.9722E-05	0.10193	4.0454E-05	0.30279	0.00012018	396.88896494303737	70.014	0.6088	70.014	69.732	70.341	0					31	11	3	0	0	0	0.05021	1	25377	25377		80.676	69.877	1	5782300			45753	4596	33356	33625	44702	44702					0.05881113496866419
RVEPNIKWF	9	Unmodified	_RVEPNIKWF_					0	0	0		ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	MULTI-SECPEP	A375_MHC_IP_R1	1	595.2297973632812	2	594.82984	1187.64513	-0.075408	-4.4855E-05	0.057331	3.4102E-05	-0.018077	-1.0753E-05	594.8298180433026	70.011	1.1693	70.011	69.529	70.698	0					56	22	4	0	0	0	0.5212	1	25325	25325		20.415	15.659	1	32353000			45754	4596	33356	33625	44703	44703					0.05881113496866419
RVEPNIKWF	9	Unmodified	_RVEPNIKWF_					0	0	0		ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	MULTI-MSMS	A375_MHC_IP_R2	2	397.28857421875	3	396.888986	1187.64513	-0.0073917	-2.9337E-06	-0.27428	-0.00010886	-0.28167	-0.00011179	396.8887621717298	69.146	0.7098	69.882	69.575	70.285	0.73511					35	13	4	0	0	0	0.0090873	1	26194	26194		100.71	89.077	1	4673500			45755	4596	33356	33625	44704	44704					0.05881113496866419
RVEPNIKWF	9	Unmodified	_RVEPNIKWF_					0	0	0		ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	MULTI-SECPEP	A375_MHC_IP_R2	2	595.2293090820312	2	594.82984	1187.64513	-0.46582	-0.00027709	-0.31555	-0.0001877	-0.78137	-0.00046478	594.8296400279816	69.189	1.0144	69.924	69.373	70.387	0.73512					55	19	4	0	0	0	0.37663	1	26150	26150		36.506	22.6	1	26663000			45756	4596	33356	33625	44705	44705					0.05881113496866419
RVEQPVQQQVL	11	Unmodified	_RVEQPVQQQVL_					0	0	0			REV__ENST00000557457.1_2_14:105406531-105406636:-|nuORF	REV__ENST00000557457.1_2_14:105406531-105406636:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	662.7713623046875	2	662.372601	1322.73065	-0.84639	-0.00056062	-0.40157	-0.00026599	-1.248	-0.00082661	662.3721056408807	131.59	1.1672	131.78	131.09	132.25	0.18954					48	22	3	0	0	0	1.0005	1	51587	51587		0.23584	0	1	7021800	+		45757	26125	33357	33626	44706	44706					0.08219233891895783
RVERFGGQDR	10	Unmodified	_RVERFGGQDR_					0	0	0			REV__ENSG00000162613|ENST00000370768|FUBP1	REV__ENSG00000162613|ENST00000370768|FUBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	610.2156982421875	2	610.31816	1218.62177	-0.41177	-0.00025131	-0.70336	-0.00042927	-1.1151	-0.00068058	610.3177081477971	63.81	0.60902	64.55	64.191	64.8	0.74022					16	11	2	0	0	0	0.92514	1	24171	24171		12.241	4.6317	1	5007900	+		45758	20274	33358	33627	44707	44707					0.021200677122806155
RVEVLSSFE	9	Unmodified	_RVEVLSSFE_					0	0	0			REV__nc|ENSG00000135333|Q15375-2|EPHA7	REV__nc|ENSG00000135333|Q15375-2|EPHA7	MULTI-MSMS	A375_MHC_IP_R2	2	533.6815185546875	2	533.282389	1064.55022	-0.70986	-0.00037855	-0.87616	-0.00046724	-1.586	-0.00084579	533.2818681993422	67.556	0.7115	68.292	67.9	68.612	0.73631					22	13	2	0	0	0	0.61998	1	25562	25562		13.906	0	1	5363800	+		45759	18843	33359	33628	44708	44708					0.020531352350417365
RVEVLSSFE	9	Unmodified	_RVEVLSSFE_					0	0	0			REV__nc|ENSG00000135333|Q15375-2|EPHA7	REV__nc|ENSG00000135333|Q15375-2|EPHA7	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	533.282389	1064.55022	-0.70986	-0.00037855	-0.87616	-0.00046724	-1.586	-0.00084579	533.2818681993422	67.556	0.7115	68.292	67.9	68.612	0.73631	-0.10646	-0.00025238	NaN	13.906	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5363800	+		45760	18843	33359	33628							0.020531352350417365
RVEVPLERY	9	Unmodified	_RVEVPLERY_					0	0	0			REV__ENSG00000134398|ENST00000256797|ERN2	REV__ENSG00000134398|ENST00000256797|ERN2	MULTI-SECPEP	A375_MHC_IP_R2	2	580.6519165039062	2	580.824755	1159.63496	-0.40546	-0.0002355	-0.305	-0.00017715	-0.71046	-0.00041265	580.8245479353542	50.966	0.50507	51.72	51.462	51.968	0.75406					21	9	3	0	0	0	0.69381	1	19171	19171		20.415	11.669	1	7662500	+		45761	18777	33360	33629	44709	44709					0.06152505771660799
RVFADGKTW	9	Unmodified	_RVFADGKTW_					0	0	0		ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	MULTI-SECPEP	A375_MHC_IP_R1	1	540.6849365234375	2	540.285266	1078.55598	-0.55392	-0.00029927	0.2955	0.00015965	-0.25842	-0.00013962	540.285335823286	37.245	0.35659	37.245	37.045	37.402	0					9	5	2	0	0	0	0.67539	1	12570	12570		21.537	8.4945	1	2531700			45762	9655	33361	33630	44710	44710					0.019842785373839433
RVFDLPLTW	9	Unmodified	_RVFDLPLTW_					0	0	0		ENSG00000180488|ENST00000370791|MIGA1;nc|ENSG00000180488|Q8NAN2|MIGA1;nc|ENSG00000180488|Q8NAN2-2|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	MULTI-SECPEP	A375_MHC_IP_R1	1	574.2197875976562	2	573.818941	1145.62333	0.057356	3.2912E-05	0.17186	9.8615E-05	0.22921	0.00013153	573.8190481677451	126.33	0.65909	126.33	126.2	126.86	0					17	12	2	0	0	0	0.010978	1	48243	48243		142.08	89.811	1	46933000			45763	8301	33362	33631	44711	44711					0.0563430874833557
RVFDLPLTW	9	Unmodified	_RVFDLPLTW_					0	0	0		ENSG00000180488|ENST00000370791|MIGA1;nc|ENSG00000180488|Q8NAN2|MIGA1;nc|ENSG00000180488|Q8NAN2-2|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	MULTI-SECPEP	A375_MHC_IP_R2	2	574.2183227539062	2	573.818941	1145.62333	-0.18451	-0.00010587	-0.92917	-0.00053318	-1.1137	-0.00063905	573.8182194293416	125.91	0.40588	126.2	126.07	126.48	0.2951					11	7	2	0	0	0	0.30925	1	49232	49232		49.554	33.707	1	49695000			45764	8301	33362	33631	44712	44712					0.0563430874833557
RVFEDESGKHW	11	Unmodified	_RVFEDESGKHW_					0	0	0		ENSG00000125821|ENST00000377452|DTD1;ENST00000494921.1_1_20:18568716-18611186:+|nuORF	ENSG00000125821|ENST00000377452|DTD1	ENSG00000125821|ENST00000377452|DTD1	MULTI-SECPEP	A375_MHC_IP_R1	1	464.2892761230469	3	463.889714	1388.64731	-0.40427	-0.00018754	-0.077972	-3.6171E-05	-0.48224	-0.00022371	463.8896527809791	27.811	0.65428	27.811	27.584	28.238	0					34	12	4	0	0	0	0.00096066	1	8451	8451		154.88	128.75	1	81550000			45765	3995	33363	33632	44713	44713					-0.031465025559555215
RVFEDESGKHW	11	Unmodified	_RVFEDESGKHW_					0	0	0		ENSG00000125821|ENST00000377452|DTD1;ENST00000494921.1_1_20:18568716-18611186:+|nuORF	ENSG00000125821|ENST00000377452|DTD1	ENSG00000125821|ENST00000377452|DTD1	MULTI-SECPEP	A375_MHC_IP_R2	2	464.2893981933594	3	463.889714	1388.64731	-0.66029	-0.0003063	0.13753	6.3797E-05	-0.52276	-0.0002425	463.889747055372	27.088	0.56264	27.766	27.536	28.098	0.67857					33	10	5	0	0	0	0.00094337	1	9199	9199		154.88	120.09	1	85514000			45766	3995	33363	33632	44714	44714					-0.031465025559555215
RVFGTFSDET	10	Unmodified	_RVFGTFSDET_					0	0	0			REV__LLGL2|p.A705T|1|0.37|ENSG00000073350|chr17:75571037-75571037|G/A|missense_variant	REV__LLGL2|p.A705T|1|0.37|ENSG00000073350|chr17:75571037-75571037|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	387.5960388183594	3	386.852377	1157.5353	-0.59916	-0.00023179	0.054818	2.1206E-05	-0.54435	-0.00021058	386.85244619214546	28.474	0.25393	29.152	28.96	29.214	0.67857					7	4	2	0	0	0	0.92957	1	9775	9775		5.7834	4.9191	1	2911200	+		45767	26930	33364	33633	44715	44715					-0.037163566329581954
RVFGTFSDET	10	Unmodified	_RVFGTFSDET_					0	0	0			REV__LLGL2|p.A705T|1|0.37|ENSG00000073350|chr17:75571037-75571037|G/A|missense_variant	REV__LLGL2|p.A705T|1|0.37|ENSG00000073350|chr17:75571037-75571037|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	386.852377	1157.5353	-0.21709	-8.3983E-05	0.11111	4.2983E-05	-0.10598	-4.1E-05	387.1868398981609	29.245	0.30552	29.245	29.047	29.353	0	0.046601	3.7212E-05	NaN	5.7834	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3225800	+		45768	26930	33364	33633							-0.037163566329581954
RVFHIHNESW	10	Unmodified	_RVFHIHNESW_					0	0	0		nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN	nc|ENSG00000088812|O75882-3|ATRN	nc|ENSG00000088812|O75882-3|ATRN	MULTI-MSMS	A375_MHC_IP_R1	1	442.62322998046875	3	442.223028	1323.64725	-0.23301	-0.00010304	0.183	8.0925E-05	-0.050014	-2.2117E-05	442.2231100348207	37.909	0.50992	37.909	37.658	38.168	0					26	9	4	0	0	0	0.36067	1	12788	12788		25.997	18.052	1	11205000			45769	1897	33365	33634	44716	44716					-0.0016245776528194256
RVFHIHNESW	10	Unmodified	_RVFHIHNESW_					0	0	0		nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN	nc|ENSG00000088812|O75882-3|ATRN	nc|ENSG00000088812|O75882-3|ATRN	MULTI-MSMS	A375_MHC_IP_R2	2	442.9571228027344	3	442.223028	1323.64725	-0.92703	-0.00040996	0.45092	0.00019941	-0.47611	-0.00021055	442.2231729308605	36.827	0.60863	37.598	37.308	37.917	0.7709					28	11	3	0	0	0	0.47255	1	13434	13434		20.871	20.871	1	12845000			45770	1897	33365	33634	44717	44717					-0.0016245776528194256
RVFKKWKWLFR	11	Unmodified	_RVFKKWKWLFR_					0	0	0			REV__ENST00000429378.5_3_16:242971-256079:-|nuORF	REV__ENST00000429378.5_3_16:242971-256079:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	531.7437133789062	3	531.989146	1592.94561	-0.48458	-0.00025779	1.6559	0.00088092	1.1713	0.00062313	531.9898963397394	149.66	0.082092	149.67	149.64	149.72	0.01825					6	5	2	0	0	0	1.0015	1	58071	58071		0.08335	0.08335	1	52028	+		45771	24688	33366	33635	44718	44718					0.17285245218158707
RVFPDKGYSF	10	Unmodified	_RVFPDKGYSF_					0	0	0		ENSG00000116001|ENST00000433529|TIA1;ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1	ENSG00000116001|ENST00000433529|TIA1	ENSG00000116001|ENST00000433529|TIA1	MULTI-SECPEP	A375_MHC_IP_R1	1	608.7112426757812	2	608.31148	1214.60841	-0.3834	-0.00023323	-0.052259	-3.179E-05	-0.43566	-0.00026502	608.3114146419309	52.462	0.96221	52.462	52.186	53.148	0					48	18	4	0	0	0	0.10855	1	18641	18641		102.55	74.92	1	33455000			45772	3359	33367	33636	44719	44719					0.009688168803222652
RVFPDKGYSF	10	Unmodified	_RVFPDKGYSF_					0	0	0		ENSG00000116001|ENST00000433529|TIA1;ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1	ENSG00000116001|ENST00000433529|TIA1	ENSG00000116001|ENST00000433529|TIA1	MULTI-SECPEP	A375_MHC_IP_R2	2	406.276611328125	3	405.876746	1214.60841	-0.25462	-0.00010334	-0.088719	-3.6009E-05	-0.34334	-0.00013935	405.8766521527213	51.741	0.96554	52.493	52.169	53.134	0.75225					51	18	4	0	0	0	0.051307	1	19429	19429		94.801	71.785	1	20750000			45773	3359	33367	33636	44720	44720					0.009688168803222652
RVFPDKGYSF	10	Unmodified	_RVFPDKGYSF_					0	0	0		ENSG00000116001|ENST00000433529|TIA1;ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1	ENSG00000116001|ENST00000433529|TIA1	ENSG00000116001|ENST00000433529|TIA1	MULTI-SECPEP	A375_MHC_IP_R2	2	608.7111206054688	2	608.31148	1214.60841	-0.70135	-0.00042664	0.040553	2.4669E-05	-0.6608	-0.00040197	608.3114446556699	51.745	0.7636	52.497	52.169	52.932	0.75225					46	14	4	0	0	0	0.22595	1	19424	19424		84.738	84.738	1	30785000			45774	3359	33367	33636	44721	44721					0.009688168803222652
RVFPEKGYSF	10	Unmodified	_RVFPEKGYSF_					0	0	0		ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	615.7186889648438	2	615.319306	1228.62406	-0.22142	-0.00013624	-0.077332	-4.7584E-05	-0.29875	-0.00018383	615.3191934197569	50.015	1.0719	50.015	49.642	50.713	0					65	20	5	0	0	0	0.0091722	1	17640	17640		128.87	86.914	1	52496000			45775	5935	33368	33637	44722	44722					0.018891033973659432
RVFPEKGYSF	10	Unmodified	_RVFPEKGYSF_					0	0	0		ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	410.9486083984375	3	410.548629	1228.62406	0.15764	6.472E-05	0.060963	2.5028E-05	0.21861	8.9749E-05	410.5485578740505	50.017	0.97102	50.017	49.642	50.613	0					56	18	5	0	0	0	0.021392	1	17642	17642		66.55	30.155	1	40256000			45776	5935	33368	33637	44723	44723					0.018891033973659432
RVFPEKGYSF	10	Unmodified	_RVFPEKGYSF_					0	0	0		ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	616.2199096679688	2	615.319306	1228.62406	-0.81913	-0.00050403	0.31122	0.0001915	-0.50791	-0.00031252	615.3194136160678	49.162	0.81118	49.919	49.536	50.348	0.75737					49	15	4	0	0	0	0.14143	1	18395	18395		55.235	39.387	1	55335000			45777	5935	33368	33637	44724	44724					0.018891033973659432
RVFPEKGYSF	10	Unmodified	_RVFPEKGYSF_					0	0	0		ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	410.9482421875	3	410.548629	1228.62406	-0.19358	-7.9472E-05	0.11609	4.7659E-05	-0.077489	-3.1813E-05	410.5486103664342	49.167	1.0656	49.924	49.536	50.602	0.75736					63	20	5	0	0	0	0.021392	1	18402	18402		66.55	36.118	1	44009000			45778	5935	33368	33637	44725	44725					0.018891033973659432
RVFPHEVNW	9	Unmodified	_RVFPHEVNW_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;ENST00000562609.2_1_16:27472673-27474977:-|nuORF;ENST00000564747.1_1_16:27472673-27473321:-|nuORF	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	A375_MHC_IP_R1	1	395.60504150390625	3	395.205085	1182.59343	-0.085356	-3.3733E-05	0.21009	8.3028E-05	0.12473	4.9294E-05	395.2051425014157	53.278	0.91463	53.278	52.946	53.861	0					59	17	4	0	0	0	0.27064	1	18932	18932		24.882	5.6246	1	30834000			45779	1649	33369	33638	44726	44726					0.00943369803007954
RVFPHEVNW	9	Unmodified	_RVFPHEVNW_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;ENST00000562609.2_1_16:27472673-27474977:-|nuORF;ENST00000564747.1_1_16:27472673-27473321:-|nuORF	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-SECPEP	A375_MHC_IP_R1	1	592.7039794921875	2	592.30399	1182.59343	-0.41294	-0.00024458	0.037733	2.235E-05	-0.37521	-0.00022224	592.3040743418344	53.341	1.0144	53.341	52.847	53.861	0					59	19	4	0	0	0	0.13199	1	18930	18930		61.09	46.252	1	29935000			45780	1649	33369	33638	44727	44727					0.00943369803007954
RVFPHEVNW	9	Unmodified	_RVFPHEVNW_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;ENST00000562609.2_1_16:27472673-27474977:-|nuORF;ENST00000564747.1_1_16:27472673-27473321:-|nuORF	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	A375_MHC_IP_R2	2	395.6046447753906	3	395.205085	1182.59343	-0.56527	-0.0002234	0.33863	0.00013383	-0.22665	-8.9573E-05	395.20518275536284	52.407	1.2163	53.159	52.729	53.945	0.75225					63	23	4	0	0	0	0.11629	1	19680	19680		37.075	23.169	1	42714000			45781	1649	33369	33638	44728	44728					0.00943369803007954
RVFPHEVNW	9	Unmodified	_RVFPHEVNW_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;ENST00000562609.2_1_16:27472673-27474977:-|nuORF;ENST00000564747.1_1_16:27472673-27473321:-|nuORF	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-SECPEP	A375_MHC_IP_R2	2	592.70361328125	2	592.30399	1182.59343	-0.99005	-0.00058641	0.17471	0.00010348	-0.81534	-0.00048293	592.3041711466018	52.416	0.86115	53.168	52.729	53.59	0.75225					58	16	5	0	0	0	0.16237	1	19687	19687		63.227	42.774	1	38315000			45782	1649	33369	33638	44729	44729					0.00943369803007954
RVFPYSVFY	9	Unmodified	_RVFPYSVFY_					0	0	0		NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	589.704833984375	2	589.305667	1176.59678	-0.5115	-0.00030143	1.3205	0.00077817	0.80898	0.00047674	589.3064397892275	104.94	1.0162	105.7	105.26	106.28	0.76308					51	19	4	0	0	0	0.082375	4	39676	39641;39650;39676;39684		53.833	25.346	1	9813900			45783	5244	33370	33639	44730;44731;44732;44733	44732					0.015546198570064007
RVFQEVSSF	9	Unmodified	_RVFQEVSSF_					0	0	0		nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2;ENST00000367112.1_2_6:158500311-158517393:+|nuORF	nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-3|SYNJ2	MULTI-SECPEP	A375_MHC_IP_R1	1	550.1828002929688	2	549.782556	1097.55056	-0.45638	-0.00025091	0.21399	0.00011765	-0.24239	-0.00013326	549.7826166389221	62.94	0.46114	62.94	62.762	63.223	0					13	8	2	0	0	0	0.37663	1	22766	22766		36.506	8.8774	1	2115900			45784	1671	33371	33640	44734	44734					0.005685549549070856
RVFQEVSSF	9	Unmodified	_RVFQEVSSF_					0	0	0		nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2;ENST00000367112.1_2_6:158500311-158517393:+|nuORF	nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-3|SYNJ2	MULTI-SECPEP	A375_MHC_IP_R2	2	550.181884765625	2	549.782556	1097.55056	-0.98349	-0.0005407	0.020903	1.1492E-05	-0.96258	-0.00052921	549.7822845598589	62.119	0.50799	62.862	62.571	63.079	0.74263					15	9	2	0	0	0	0.16764	1	23546	23546		51.63	25.362	1	2290100			45785	1671	33371	33640	44735	44735					0.005685549549070856
RVFSDIIYTV	10	Unmodified	_RVFSDIIYTV_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	A375_MHC_IP_R1	1	606.666259765625	2	606.834788	1211.65502	-0.31207	-0.00018937	-0.74829	-0.00045409	-1.0604	-0.00064346	606.8346422113412	98.854	0.45859	98.854	98.557	99.015	0					22	8	3	0	0	0	0.48194	1	36268	36268		27.223	11.975	1	3707500			45786	3978	33372	33641	44736	44736					0.05766256711626738
RVFSDIIYTV	10	Unmodified	_RVFSDIIYTV_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	A375_MHC_IP_R2	2	607.7366943359375	2	606.834788	1211.65502	-0.46071	-0.00027957	-0.17154	-0.0001041	-0.63225	-0.00038367	606.8346828284801	97.975	0.55949	98.735	98.436	98.995	0.75977					25	10	3	0	0	0	0.59998	1	37162	37162		23.79	3.3752	1	3446100			45787	3978	33372	33641	44737	44737					0.05766256711626738
RVFSEDRTRFY	11	Unmodified	_RVFSEDRTRFY_					0	0	0		nc|ENSG00000117020|Q9Y243-2|AKT3;ENSG00000117020|ENST00000673466|AKT3	nc|ENSG00000117020|Q9Y243-2|AKT3	nc|ENSG00000117020|Q9Y243-2|AKT3	MULTI-MSMS	A375_MHC_IP_R2	2	492.4771423339844	3	492.584513	1474.73171	-0.90533	-0.00044595	-0.015098	-7.4371E-06	-0.92043	-0.00045339	492.5843216570385	37.415	0.46025	38.186	37.968	38.429	0.7709					18	7	3	0	0	0	0.42751	2	13697	13697;13721		36.822	25.923	1	8322400			45788	3452	33373	33642	44738;44739	44738					0.013334482607888276
RVFSPDGSRLY	11	Unmodified	_RVFSPDGSRLY_					0	0	0		nc|ENSG00000156345|Q8IZL9-3|CDK20;nc|ENSG00000156345|Q8IZL9-5|CDK20;nc|ENSG00000156345|Q8IZL9-4|CDK20;ENSG00000156345|ENST00000325303|CDK20;ENST00000459720.5_1_9:90585689-90589466:-|nuORF;nc|ENSG00000156345|Q8IZL9-2|CDK20	nc|ENSG00000156345|Q8IZL9-3|CDK20	nc|ENSG00000156345|Q8IZL9-3|CDK20	MULTI-SECPEP	A375_MHC_IP_R1	1	432.6152648925781	3	432.894688	1295.66223	-0.17819	-7.7137E-05	-0.46795	-0.00020257	-0.64614	-0.00027971	432.89436996531833	47.407	0.51086	47.407	47.107	47.618	0					17	9	3	0	0	0	0.98994	1	16587	16587		14.171	10.325	1	2700800			45789	6188	33374	33643	44740	44740					0.026229893120671477
RVFSPDGSRLY	11	Unmodified	_RVFSPDGSRLY_					0	0	0		nc|ENSG00000156345|Q8IZL9-3|CDK20;nc|ENSG00000156345|Q8IZL9-5|CDK20;nc|ENSG00000156345|Q8IZL9-4|CDK20;ENSG00000156345|ENST00000325303|CDK20;ENST00000459720.5_1_9:90585689-90589466:-|nuORF;nc|ENSG00000156345|Q8IZL9-2|CDK20	nc|ENSG00000156345|Q8IZL9-3|CDK20	nc|ENSG00000156345|Q8IZL9-3|CDK20	MULTI-SECPEP	A375_MHC_IP_R2	2	433.2945861816406	3	432.894688	1295.66223	-0.10878	-4.7089E-05	-0.46121	-0.00019965	-0.56998	-0.00024674	432.89435553341656	46.523	0.50879	47.288	47.058	47.567	0.76519					16	9	3	0	0	0	0.76886	1	17436	17436		28.271	28.131	1	3517300			45790	6188	33374	33643	44741	44741					0.026229893120671477
RVFSQGSHAW	10	Unmodified	_RVFSQGSHAW_					0	0	0		ENSG00000104228|ENST00000305364|TRIM35;nc|ENSG00000104228|Q9UPQ4-2|TRIM35	ENSG00000104228|ENST00000305364|TRIM35	ENSG00000104228|ENST00000305364|TRIM35	MULTI-MSMS	A375_MHC_IP_R1	1	588.19140625	2	587.791247	1173.56794	-0.38965	-0.00022903	0.84903	0.00049905	0.45938	0.00027002	587.7918190500379	33.128	0.86229	33.128	32.785	33.648	0					29	15	3	0	0	0	0.22146	2	10820	10734;10820		53.317	17.19	1	14791000			45791	2492	33375	33644	44742;44743	44743					-0.011901047194214698
RVFSSTLQNW	10	Unmodified	_RVFSSTLQNW_					0	0	0		ENSG00000184575|ENST00000332707|XPOT;ENST00000542958.5_1_12:64816967-64819028:+|nuORF;ENST00000443317.1_1_20:32802260-32803361:-|nuORF	ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	MULTI-SECPEP	A375_MHC_IP_R1	1	619.7190551757812	2	619.319837	1236.62512	-0.34779	-0.0002154	-0.34082	-0.00021107	-0.68861	-0.00042647	619.3198201221403	73.135	0.55777	73.135	72.728	73.285	0					15	10	2	0	0	0	0.70912	1	26613	26613		42.312	28.406	1	2444100			45792	8595	33376	33645	44744	44744					0.016273177662924354
RVFSSTLQNW	10	Unmodified	_RVFSSTLQNW_					0	0	0		ENSG00000184575|ENST00000332707|XPOT;ENST00000542958.5_1_12:64816967-64819028:+|nuORF;ENST00000443317.1_1_20:32802260-32803361:-|nuORF	ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	MULTI-MSMS	A375_MHC_IP_R2	2	619.7191162109375	2	619.319837	1236.62512	-0.88795	-0.00054993	-0.49987	-0.00030958	-1.3878	-0.00085951	619.3194093658078	72.248	0.55537	72.982	72.618	73.174	0.73421					20	10	3	0	0	0	0.17879	1	27409	27409		51.415	32.158	1	2907300			45793	8595	33376	33645	44745	44745					0.016273177662924354
RVFVDDVTI	9	Unmodified	_RVFVDDVTI_					0	0	0		ENSG00000132823|ENST00000255174|OSER1	ENSG00000132823|ENST00000255174|OSER1	ENSG00000132823|ENST00000255174|OSER1	MULTI-MSMS	A375_MHC_IP_R1	1	532.6923828125	2	532.292756	1062.57096	-0.49323	-0.00026254	-0.03256	-1.7332E-05	-0.52579	-0.00027987	532.7929551961334	78.275	0.76168	78.275	77.895	78.657	0					26	14	3	0	0	0	0.36834	1	28627	28627		26.268	0	1	5124200			45794	4453	33377	33646	44746	44746					0.04217725614716983
RVFVEEQVY	9	Unmodified	_RVFVEEQVY_					0	0	0		ENSG00000184254|ENST00000329841|ALDH1A3	ENSG00000184254|ENST00000329841|ALDH1A3	ENSG00000184254|ENST00000329841|ALDH1A3	MULTI-MSMS	A375_MHC_IP_R1	1	585.20361328125	2	584.803488	1167.59242	-0.15188	-8.8819E-05	0.0098229	5.7445E-06	-0.14205	-8.3074E-05	584.803420890561	56.623	1.3735	56.623	56.295	57.669	0					74	26	4	0	0	0	0.012843	1	20237	20237		92.653	36.476	1	75610000			45795	8565	33378	33647	44747	44747					0.015331106434359754
RVFVEEQVY	9	Unmodified	_RVFVEEQVY_					0	0	0		ENSG00000184254|ENST00000329841|ALDH1A3	ENSG00000184254|ENST00000329841|ALDH1A3	ENSG00000184254|ENST00000329841|ALDH1A3	MULTI-MSMS	A375_MHC_IP_R2	2	585.2030639648438	2	584.803488	1167.59242	-0.64242	-0.00037569	0.13637	7.9748E-05	-0.50605	-0.00029594	584.8035368436697	55.866	1.4255	56.616	56.237	57.662	0.75015					75	27	4	0	0	0	0.06083	1	21036	21036		60.074	3.8969	1	93495000			45796	8565	33378	33647	44748	44748					0.015331106434359754
RVGKNVGG	8	Unmodified	_RVGKNVGG_					0	0	0		ENST00000608168.1_1_19:16003249-16008861:-|nuORF	ENST00000608168.1_1_19:16003249-16008861:-|nuORF	ENST00000608168.1_1_19:16003249-16008861:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	393.2959289550781	2	393.732669	785.450785	0.075568	2.9754E-05	2.4446	0.00096253	2.5202	0.00099228	393.7345313279483	63.602	0.30807	63.602	63.427	63.735	0					9	5	2	0	0	0	0.972	1	23022	23022		5.2307	3.1709	1	413880			45797	13924	33379	33648	44749	44749					0.04947782131614531
RVGLRLDPPG	10	Unmodified	_RVGLRLDPPG_					0	0	0			REV__ENST00000358625.3_1_9:137023121-137023325:+|nuORF	REV__ENST00000358625.3_1_9:137023121-137023325:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	359.9423828125	3	360.548852	1078.62473	-0.41726	-0.00015044	-0.14312	-5.1602E-05	-0.56038	-0.00020204	360.54873067514694	36.31	0.71422	37.081	36.85	37.564	0.7709					18	13	2	0	0	0	0.90513	1	13276	13276		7.4771	0.43998	1	3178800	+		45798	23861	33380	33649	44750	44750					0.0885594283708997
RVGPVAATY	9	Unmodified	_RVGPVAATY_					0	0	0		nc|ENSG00000105655|Q9NPH2-2|ISYNA1;ENST00000577820.5_1_19:18545725-18548921:-|nuORF;nc|ENSG00000105655|Q9NPH2-3|ISYNA1;ENSG00000105655|ENST00000338128|ISYNA1;ENST00000582287.6_1_19:18545725-18546537:-|nuORF	nc|ENSG00000105655|Q9NPH2-2|ISYNA1	nc|ENSG00000105655|Q9NPH2-2|ISYNA1	MULTI-MSMS	A375_MHC_IP_R1	1	467.6611022949219	2	467.261259	932.507966	-0.14193	-6.6317E-05	-0.029166	-1.3628E-05	-0.17109	-7.9945E-05	467.2611582520265	35.191	0.55994	35.191	35.013	35.573	0					17	10	2	0	0	0	0.51106	1	11694	11694		19.257	1.122	1	1942500			45799	2623	33381	33650	44751	44751					0.0390120461730703
RVGRGLHA	8	Unmodified	_RVGRGLHA_					0	0	0			REV__ENST00000416255.5_1_2:101179854-101179926:+|nuORF	REV__ENST00000416255.5_1_2:101179854-101179926:+|nuORF	MSMS	A375_MHC_IP_R1	1	433.2848205566406	2	433.259385	864.504218	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.58	1	143.58	143.08	144.08	0								0	0	0	0.16876	1	55079	55079		0.79363	0	1		+		45800	24532	33382	33651	44752	44752					0.06654579634118818
RVHAFLEQW	9	Unmodified	_RVHAFLEQW_					0	0	0		nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2;ENST00000549209.5_1_12:56565201-56568439:-|nuORF;ENST00000483847.1_1_3:47712102-47719818:-|nuORF;ENST00000552931.1_1_12:56566100-56568508:-|nuORF;ENSG00000173473|ENST00000254480|SMARCC1	nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;ENSG00000173473|ENST00000254480|SMARCC1	nc|ENSG00000139613|Q8TAQ2-2|SMARCC2	MULTI-MSMS	A375_MHC_IP_R1	1	396.2771301269531	3	395.876969	1184.60908	-0.24327	-9.6305E-05	0.6169	0.00024422	0.37363	0.00014791	395.8771224927497	66.3	0.50807	66.3	66.072	66.58	0					18	9	3	0	0	0	0.67152	1	24036	24036		9.544	6.5487	1	2540400			45801	5089;7800	33383	33652	44753	44753					0.02415656320022208
RVHAFLEQW	9	Unmodified	_RVHAFLEQW_					0	0	0		nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2;ENST00000549209.5_1_12:56565201-56568439:-|nuORF;ENST00000483847.1_1_3:47712102-47719818:-|nuORF;ENST00000552931.1_1_12:56566100-56568508:-|nuORF;ENSG00000173473|ENST00000254480|SMARCC1	nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;ENSG00000173473|ENST00000254480|SMARCC1	nc|ENSG00000139613|Q8TAQ2-2|SMARCC2	MULTI-MSMS	A375_MHC_IP_R2	2	396.27655029296875	3	395.876969	1184.60908	-0.22263	-8.8133E-05	0.1136	4.497E-05	-0.10903	-4.3162E-05	395.8769171933088	65.231	0.609	65.969	65.715	66.324	0.73811					25	11	3	0	0	0	0.6343	1	24750	24750		12.873	8.6831	1	2169100			45802	5089;7800	33383	33652	44754	44754					0.02415656320022208
RVHMYRYE	8	Unmodified	_RVHMYRYE_					0	0	0		ENST00000376945.3_2_13:95363334-95363445:-|nuORF	ENST00000376945.3_2_13:95363334-95363445:-|nuORF	ENST00000376945.3_2_13:95363334-95363445:-|nuORF	MSMS	A375_MHC_IP_R1	1	577.2579345703125	2	577.2822	1152.54985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.43	1	146.43	145.93	146.93	0								0	0	0	0.16876	1	56020	56020		0.69038	0	1				45803	11291	33384	33653	44755	44755					-0.020325629657918398
RVHPETYEW	9	Unmodified	_RVHPETYEW_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	A375_MHC_IP_R1	1	406.59661865234375	3	406.196367	1215.56727	-0.28788	-0.00011694	0.342	0.00013892	0.054124	2.1985E-05	406.19650345081016	37.143	0.763	37.143	36.895	37.658	0					36	14	4	0	0	0	0.12771	1	12462	12462		35.612	28.511	1	20853000			45804	2857	33385	33654	44756	44756					-0.03188944159160201
RVHPETYEW	9	Unmodified	_RVHPETYEW_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-SECPEP	A375_MHC_IP_R1	1	609.188720703125	2	608.790912	1215.56727	-0.30474	-0.00018552	-0.10549	-6.4223E-05	-0.41023	-0.00024974	608.7907372684122	37.122	0.66002	37.122	36.845	37.505	0					30	12	3	0	0	0	0.013591	1	12458	12458		118.07	87.432	1	21908000			45805	2857	33385	33654	44757	44757					-0.03188944159160201
RVHPETYEW	9	Unmodified	_RVHPETYEW_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	A375_MHC_IP_R2	2	406.5960998535156	3	406.196367	1215.56727	-0.12461	-5.0614E-05	-0.030016	-1.2192E-05	-0.15462	-6.2807E-05	406.19628712430244	36.255	0.61054	37.026	36.749	37.359	0.7709					40	11	5	0	0	0	0.054426	1	13159	13159		49.527	38.009	1	28335000			45806	2857	33385	33654	44758	44758					-0.03188944159160201
RVHPETYEW	9	Unmodified	_RVHPETYEW_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-SECPEP	A375_MHC_IP_R2	2	609.1898193359375	2	608.790912	1215.56727	-0.5929	-0.00036095	-0.17582	-0.00010704	-0.76872	-0.00046799	608.7907269881185	36.268	0.71267	37.039	36.749	37.461	0.7709					39	13	5	0	0	0	0.010978	1	13162	13162		142.08	102.12	1	25579000			45807	2857	33385	33654	44759	44759					-0.03188944159160201
RVHPRVWSPL	10	Unmodified	_RVHPRVWSPL_					0	0	0			REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF	REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	415.6082458496094	3	416.243763	1245.70946	-0.2307	-9.6027E-05	-0.52591	-0.00021891	-0.75661	-0.00031494	416.24378994047754	49.096	0.55695	49.853	49.69	50.247	0.75737					13	10	2	0	0	0	0.93733	1	18467	18467		8.4443	4.3277	1	1359900	+		45808	22897	33386	33655	44760	44760					0.09643313373703677
RVHRVRNER	9	Unmodified	_RVHRVRNER_					0	0	0		ENST00000490180.2_1_14:65197520-65198405:+|nuORF;nc|ENSG00000126822|A1L390-3|PLEKHG3;PLEKHG3|p.Q1181Sfs*25|1|0.32|ENSG00000126822|chr14:64743583-64743583|C/-|frameshift_variant;ENSG00000126822|ENST00000247226|PLEKHG3	ENST00000490180.2_1_14:65197520-65198405:+|nuORF	ENST00000490180.2_1_14:65197520-65198405:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	610.5835571289062	2	611.355411	1220.69627	-0.61504	-0.00037601	0.58821	0.0003596	-0.026828	-1.6401E-05	611.3557624815066	135.04	1.8839	135.04	134.47	136.36	0					50	36	2	0	0	0	0.8028	1	51861	51861		4.3292	4.3292	1	2377100			45809	4062	33387	33656	44761	44761					0.09474875314299425
RVHTREKPF	9	Unmodified	_RVHTREKPF_					0	0	0		nc|ENSG00000221994|Q2M218-2|ZNF630;ENSG00000221994|ENST00000276054|ZNF630	nc|ENSG00000221994|Q2M218-2|ZNF630	nc|ENSG00000221994|Q2M218-2|ZNF630	MULTI-MSMS	A375_MHC_IP_R1	1	390.6036682128906	3	390.556118	1168.64652	0.24062	9.3977E-05	2.1521	0.0008405	2.3927	0.00093448	390.8913725503067	28.548	0.40609	28.548	28.339	28.745	0					20	7	3	0	0	0	0.69317	1	8729	8729		7.609	0.13188	1	3382100			45810	9680	33388	33657	44762	44762					0.06894747585647565
RVICCTEDML	10	Unmodified	_RVICCTEDML_					0	0	0		ENST00000588526.5_1_19:13875372-13879175:+|nuORF;ENST00000591688.5_1_19:13875372-13879601:+|nuORF;ENSG00000037757|ENST00000040663|MRI1	ENST00000588526.5_1_19:13875372-13879175:+|nuORF	ENST00000588526.5_1_19:13875372-13879175:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	394.6243896484375	3	394.848705	1181.52429	-0.099573	-3.9316E-05	0.99146	0.00039148	0.89189	0.00035216	394.84905642731076	41.919	0.30513	41.919	41.777	42.082	0					8	5	2	0	0	0	0.94421	1	14548	14548		1.9064	1.7665	1	899890			45811	1149	33389	33658	44763	44763					-0.0592154159473921
RVIDVGSEW	9	Unmodified	_RVIDVGSEW_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B;ENST00000494819.5_1_1:89324456-89357188:-|nuORF	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	A375_MHC_IP_R1	1	531.1741943359375	2	530.774731	1059.53491	-0.85094	-0.00045166	0.46477	0.00024669	-0.38617	-0.00020497	530.7750428213233	66.865	1.933	66.865	66.377	68.31	0					106	37	4	0	0	0	0.007896	3	24160	24160;24376;24588		129.77	71.094	1	196280000			45812	4937	33390	33659	44764;44765;44766	44764					0.0075226843787277176
RVIDVGSEW	9	Unmodified	_RVIDVGSEW_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B;ENST00000494819.5_1_1:89324456-89357188:-|nuORF	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	A375_MHC_IP_R2	2	531.174072265625	2	530.774731	1059.53491	-0.81845	-0.00043441	0.023991	1.2734E-05	-0.79446	-0.00042168	530.7747806454624	66.071	1.8332	66.81	66.425	68.258	0.73811					97	35	4	0	0	0	0.017727	2	24958	24958;25367		86.332	37.986	1	171190000			45813	4937	33390	33659	44767;44768	44767					0.0075226843787277176
RVIDYILDL	9	Unmodified	_RVIDYILDL_					0	0	0		ENSG00000117318|ENST00000374561|ID3	ENSG00000117318|ENST00000374561|ID3	ENSG00000117318|ENST00000374561|ID3	MULTI-MSMS	A375_MHC_IP_R1	1	560.7247924804688	2	560.324057	1118.63356	-0.37486	-0.00021004	-0.76284	-0.00042744	-1.1377	-0.00063748	560.3236018660527	125.86	0.24905	125.86	125.7	125.95	0					10	4	3	0	0	0	0.012843	1	48001	48001		92.653	18.454	1	23796000			45814	3472	33391	33660	44769	44769					0.07898871682914432
RVIDYILDL	9	Unmodified	_RVIDYILDL_					0	0	0		ENSG00000117318|ENST00000374561|ID3	ENSG00000117318|ENST00000374561|ID3	ENSG00000117318|ENST00000374561|ID3	MSMS	A375_MHC_IP_R2	2	560.7239990234375	2	560.324057	1118.63356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.44	1	125.73	125.23	126.23	0.2951								0	0	0	0.10031	1	48910	48910		41.956	0.11592	1				45815	3472	33391	33660	44770	44770					0.07898871682914432
RVIEESIYP	9	Unmodified	_RVIEESIYP_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3544G|1|0.09|ENSG00000083857|chr4:186603895-186603895|G/C|missense_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MSMS	A375_MHC_IP_R2	2	553.2222900390625	2	553.298039	1104.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129	1	129.24	128.74	129.74	0.23946								0	0	0	0.15486	1	50687	50687		7.9102	0.62092	1				45816	1791	33392	33661	44771	44771					0.03341708269135779
RVIEFAAKF	9	Unmodified	_RVIEFAAKF_					0	0	0		ENSG00000109805|ENST00000251496|NCAPG;ENST00000513226.1_1_4:17812700-17814869:+|nuORF	ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	MULTI-SECPEP	A375_MHC_IP_R1	1	541.2134399414062	2	540.813659	1079.61277	-0.67094	-0.00036286	0.091291	4.9371E-05	-0.57965	-0.00031348	540.8136431042702	61.253	0.40778	61.253	61.075	61.483	0					17	7	3	0	0	0	0.36673	1	22096	22096		45.74	23.993	1	5672900			45817	2894	33393	33662	44772	44772					0.07614326093880663
RVIEYLEHC	9	Unmodified	_RVIEYLEHC_					0	0	0		nc|ENSG00000062650|Q7Z5K2-2|WAPL;ENSG00000062650|ENST00000298767|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	MULTI-SECPEP	A375_MHC_IP_R2	2	581.689697265625	2	581.289691	1160.56483	-0.52282	-0.00030391	0.78635	0.0004571	0.26353	0.00015319	581.2898903932478	50.228	0.60798	50.982	50.753	51.361	0.75406					23	11	3	0	0	0	0.6191	1	18905	18905		36.506	23.975	1	2717600			45818	14469	33394	33663	44773	44773					-0.009031158884454271
RVIGDLDTV	9	Unmodified	_RVIGDLDTV_					0	0	0		nc|ENSG00000197530|Q96AX9-8|MIB2;nc|ENSG00000197530|Q96AX9-6|MIB2;nc|ENSG00000197530|Q96AX9-3|MIB2;ENSG00000197530|ENST00000355826|MIB2;nc|ENSG00000197530|Q96AX9-9|MIB2;ENST00000511502.5_1_1:1550926-1563560:+|nuORF;ENST00000507229.5_1_1:1551767-1563881:+|nuORF;nc|ENSG00000197530|Q96AX9-10|MIB2;nc|ENSG00000197530|Q96AX9-7|MIB2;nc|ENSG00000197530|Q96AX9-4|MIB2;ENST00000479659.5_1_1:1561777-1565907:+|nuORF	nc|ENSG00000197530|Q96AX9-8|MIB2	nc|ENSG00000197530|Q96AX9-8|MIB2	MULTI-SECPEP	A375_MHC_IP_R1	1	494.6768798828125	2	494.277106	986.53966	-0.29804	-0.00014731	0.30731	0.0001519	0.0092779	4.5858E-06	494.2769985653632	55.749	1.4739	55.749	55.381	56.855	0					60	28	3	0	0	0	0.24324	1	19903	19903		31.268	0	1	26472000			45819	9166	33395	33664	44774	44774					0.0458515258060288
RVIGSELVQKY	11	Unmodified	_RVIGSELVQKY_					0	0	0		nc|ENSG00000161057|P35998-2|PSMC2;ENSG00000161057|ENST00000292644|PSMC2	nc|ENSG00000161057|P35998-2|PSMC2	nc|ENSG00000161057|P35998-2|PSMC2	MULTI-MSMS	A375_MHC_IP_R1	1	431.2882385253906	3	431.250472	1290.72959	-0.062307	-2.687E-05	-0.35593	-0.00015349	-0.41824	-0.00018036	431.25021558053584	46.023	0.25409	46.023	45.89	46.144	0					7	4	2	0	0	0	0.30938	1	16131	16131		32.518	26.284	1	1698500			45820	6463	33396	33665	44775	44775					0.09585019523001392
RVIGTLEEV	9	Unmodified	_RVIGTLEEV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	A375_MHC_IP_R1	1	508.7103271484375	2	508.292756	1014.57096	-0.37647	-0.00019136	-0.41567	-0.00021128	-0.79213	-0.00040264	508.29255387968124	55.508	1.0683	55.508	55.126	56.194	0					64	20	4	0	0	0	0.0090297	1	19917	19917		99.755	14.483	1	165160000			45821	2175	33397	33666	44776	44776					0.06425725614724342
RVIGTLEEV	9	Unmodified	_RVIGTLEEV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	A375_MHC_IP_R2	2	508.71002197265625	2	508.292756	1014.57096	-0.93408	-0.00047479	-0.11656	-5.9247E-05	-1.0506	-0.00053403	508.2927186430232	54.594	1.0164	55.345	55.018	56.034	0.75075					59	19	4	0	0	0	0.0022058	2	20651	20546;20651		142.08	27.431	1	266000000			45822	2175	33397	33666	44777;44778	44778					0.06425725614724342
RVINEEYKIW	10	Unmodified	_RVINEEYKIW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000401893.7_1_1:33116898-33134028:+|nuORF	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-MSMS	A375_MHC_IP_R1	1	675.7638549804688	2	675.364244	1348.71394	-0.64551	-0.00043596	0.031275	2.1122E-05	-0.61424	-0.00041483	675.3643647345377	61.519	0.86882	61.519	61.126	61.994	0					51	16	5	0	0	0	0.061707	1	22158	22158		83.429	41.589	1	37546000			45823	6544	33398	33667	44779	44779					0.05352733005929622
RVINEEYKIW	10	Unmodified	_RVINEEYKIW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000401893.7_1_1:33116898-33134028:+|nuORF	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-MSMS	A375_MHC_IP_R1	1	450.9783020019531	3	450.578588	1348.71394	-0.16651	-7.5027E-05	-0.098831	-4.4531E-05	-0.26534	-0.00011956	450.5785208335818	61.509	0.76715	61.509	61.227	61.994	0					41	14	4	0	0	0	0.011603	1	22160	22160		115.82	90.864	1	29577000			45824	6544	33398	33667	44780	44780					0.05352733005929622
RVINEEYKIW	10	Unmodified	_RVINEEYKIW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000401893.7_1_1:33116898-33134028:+|nuORF	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-MSMS	A375_MHC_IP_R2	2	450.9783630371094	3	450.578588	1348.71394	-0.58272	-0.00026256	-0.0334	-1.5049E-05	-0.61612	-0.00027761	450.5785570879522	60.702	0.9101	61.447	61.16	62.07	0.74504					47	17	4	0	0	0	0.0081946	1	22964	22964		106.37	86.378	1	29845000			45825	6544	33398	33667	44781	44781					0.05352733005929622
RVINEEYKIW	10	Unmodified	_RVINEEYKIW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000401893.7_1_1:33116898-33134028:+|nuORF	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-MSMS	A375_MHC_IP_R2	2	675.7634887695312	2	675.364244	1348.71394	-0.99071	-0.00066909	0.096952	6.5478E-05	-0.89376	-0.00060362	675.364438393027	60.714	0.80891	61.459	61.211	62.02	0.74503					36	15	3	0	0	0	0.07753	1	22968	22968		87.258	49.083	1	30462000			45826	6544	33398	33667	44782	44782					0.05352733005929622
RVINPYDVWVT	11	Unmodified	_RVINPYDVWVT_					0	0	0			REV__nc|ENSG00000143627|P30613-2|PKLR	REV__nc|ENSG00000143627|P30613-2|PKLR	MULTI-SECPEP	A375_MHC_IP_R1	1	455.1659240722656	3	454.578588	1360.71394	-0.2346	-0.00010664	0.10564	4.8024E-05	-0.12895	-5.8619E-05	454.5786202677622	57.705	0.40564	57.705	57.518	57.923	0					10	7	2	0	0	0	0.99411	1	20734	20734		4.1166	2.3744	1	589460	+		45827	19375	33399	33668	44783	44783					0.048007330059363085
RVINPYDVWVT	11	Unmodified	_RVINPYDVWVT_					0	0	0			REV__nc|ENSG00000143627|P30613-2|PKLR	REV__nc|ENSG00000143627|P30613-2|PKLR	MULTI-MATCH	A375_MHC_IP_R2	2		3	454.578588	1360.71394	-0.65627	-0.00029833	-0.047034	-2.138E-05	-0.7033	-0.00031971	454.57845632447356	56.887	0.45883	57.637	57.408	57.867	0.75015	-0.033934	-0.00011335	NaN	4.1166	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	811310	+		45828	19375	33399	33668							0.048007330059363085
RVIPQHQL	8	Unmodified	_RVIPQHQL_					0	0	0		ENSG00000162104|ENST00000294016|ADCY9	ENSG00000162104|ENST00000294016|ADCY9	ENSG00000162104|ENST00000294016|ADCY9	MULTI-MSMS	A375_MHC_IP_R2	2	990.9842529296875	1	990.584325	989.577048	0.19339	0.00019157	0.39098	0.0003873	0.58437	0.00057887	990.5844395240549	144.71	0.10815	144.73	144.65	144.76	0.022324					4	2	2	0	0	0	0.77842	1	56527	56527		0.69038	0	1	231280			45829	6507	33400	33669	44784	44784					0.08184288636891779
RVISGHLGW	9	Unmodified	_RVISGHLGW_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1;ENST00000506918.1_1_4:155463230-155466996:-|nuORF	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-SECPEP	A375_MHC_IP_R1	1	513.1875	2	512.787976	1023.5614	-0.5697	-0.00029214	0.001719	8.8147E-07	-0.56798	-0.00029125	512.7879685108493	47.133	0.66615	47.133	46.901	47.567	0					37	12	4	0	0	0	0.087712	1	16550	16550		75.761	43.455	1	32090000			45830	7617	33401	33670	44785	44785					0.05056002119840741
RVISGHLGW	9	Unmodified	_RVISGHLGW_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1;ENST00000506918.1_1_4:155463230-155466996:-|nuORF	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-SECPEP	A375_MHC_IP_R2	2	513.1873779296875	2	512.787976	1023.5614	-0.67274	-0.00034497	0.058063	2.9774E-05	-0.61468	-0.0003152	512.7879422612648	46.165	1.1145	46.93	46.503	47.617	0.76519					45	21	4	0	0	0	0.27742	1	17263	17263		51.63	26.23	1	28898000			45831	7617	33401	33670	44786	44786					0.05056002119840741
RVKAEPFIKW	10	Unmodified	_RVKAEPFIKW_					0	0	0		ENSG00000100664|ENST00000216554|EIF5	ENSG00000100664|ENST00000216554|EIF5	ENSG00000100664|ENST00000216554|EIF5	MULTI-MSMS	A375_MHC_IP_R1	1	425.6519470214844	3	425.252036	1272.73428	-0.11547	-4.9103E-05	0.14602	6.2095E-05	0.030552	1.2992E-05	425.2520435332464	50.688	0.50727	50.688	50.408	50.915	0					23	9	3	0	0	0	0.07753	1	17961	17961		68.484	46.684	1	7088300			45832	2210	33402	33671	44787	44787					0.10881948456403734
RVKAEPFIKW	10	Unmodified	_RVKAEPFIKW_					0	0	0		ENSG00000100664|ENST00000216554|EIF5	ENSG00000100664|ENST00000216554|EIF5	ENSG00000100664|ENST00000216554|EIF5	MULTI-MSMS	A375_MHC_IP_R2	2	425.6518859863281	3	425.252036	1272.73428	-0.4352	-0.00018507	-0.033834	-1.4388E-05	-0.46903	-0.00019946	425.2519531621951	49.755	0.71134	50.51	50.244	50.955	0.75406					34	13	4	0	0	0	0.11261	1	18672	18672		60.943	43.08	1	7117800			45833	2210	33402	33671	44788	44788					0.10881948456403734
RVKDFSYNF	9	Unmodified	_RVKDFSYNF_					0	0	0		TLR4|p.Q562Tfs*9|1|0.19|ENSG00000136869|chr9:117713805-117713806|-/A|frameshift_variant;nc|ENSG00000136869|O00206-3|TLR4;nc|ENSG00000136869|O00206-2|TLR4;ENSG00000136869|ENST00000355622|TLR4	TLR4|p.Q562Tfs*9|1|0.19|ENSG00000136869|chr9:117713805-117713806|-/A|frameshift_variant	TLR4|p.Q562Tfs*9|1|0.19|ENSG00000136869|chr9:117713805-117713806|-/A|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	392.932861328125	3	392.532979	1174.57711	0.56134	0.00022034	-0.53143	-0.0002086	0.02991	1.1741E-05	392.53267918070463	48.806	0.75861	48.806	48.325	49.084	0					29	14	3	0	0	0	0.6191	1	17230	17230		28.234	18.083	1	4660700			45834	4832	33403	33672	44789	44789					-0.0031975615377177746
RVKDFSYNF	9	Unmodified	_RVKDFSYNF_					0	0	0		TLR4|p.Q562Tfs*9|1|0.19|ENSG00000136869|chr9:117713805-117713806|-/A|frameshift_variant;nc|ENSG00000136869|O00206-3|TLR4;nc|ENSG00000136869|O00206-2|TLR4;ENSG00000136869|ENST00000355622|TLR4	TLR4|p.Q562Tfs*9|1|0.19|ENSG00000136869|chr9:117713805-117713806|-/A|frameshift_variant	TLR4|p.Q562Tfs*9|1|0.19|ENSG00000136869|chr9:117713805-117713806|-/A|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	588.6951293945312	2	588.29583	1174.57711	-0.45873	-0.00026987	-0.068331	-4.0199E-05	-0.52707	-0.00031007	588.2953954995617	47.965	0.65606	48.727	48.378	49.034	0.76128					22	12	3	0	0	0	0.27064	1	18032	18032		32.786	13.529	1	2379400			45835	4832	33403	33672	44790	44790					-0.0031975615377177746
RVKDFSYNF	9	Unmodified	_RVKDFSYNF_					0	0	0		TLR4|p.Q562Tfs*9|1|0.19|ENSG00000136869|chr9:117713805-117713806|-/A|frameshift_variant;nc|ENSG00000136869|O00206-3|TLR4;nc|ENSG00000136869|O00206-2|TLR4;ENSG00000136869|ENST00000355622|TLR4	TLR4|p.Q562Tfs*9|1|0.19|ENSG00000136869|chr9:117713805-117713806|-/A|frameshift_variant	TLR4|p.Q562Tfs*9|1|0.19|ENSG00000136869|chr9:117713805-117713806|-/A|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	392.9327087402344	3	392.532979	1174.57711	-0.083652	-3.2836E-05	-0.0052373	-2.0558E-06	-0.08889	-3.4892E-05	392.53282906846994	47.962	0.80865	48.723	48.275	49.084	0.76128					32	15	3	0	0	0	0.6191	1	18003	18003		28.234	10.791	1	5144400			45836	4832	33403	33672	44791	44791					-0.0031975615377177746
RVKDFSYNF	9	Unmodified	_RVKDFSYNF_					0	0	0		TLR4|p.Q562Tfs*9|1|0.19|ENSG00000136869|chr9:117713805-117713806|-/A|frameshift_variant;nc|ENSG00000136869|O00206-3|TLR4;nc|ENSG00000136869|O00206-2|TLR4;ENSG00000136869|ENST00000355622|TLR4	TLR4|p.Q562Tfs*9|1|0.19|ENSG00000136869|chr9:117713805-117713806|-/A|frameshift_variant	TLR4|p.Q562Tfs*9|1|0.19|ENSG00000136869|chr9:117713805-117713806|-/A|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	588.29583	1174.57711	0.16861	9.9191E-05	-0.2517	-0.00014808	-0.083095	-4.8884E-05	588.29545226933	48.813	0.60765	48.813	48.476	49.084	0	0.043018	-7.6048E-05	NaN	32.786	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2903600			45837	4832	33403	33672							-0.0031975615377177746
RVKELYNTY	9	Unmodified	_RVKELYNTY_					0	0	0		nc|ENSG00000112319|O95677-5|EYA4;nc|ENSG00000112319|O95677-2|EYA4;nc|ENSG00000112319|O95677-4|EYA4;ENSG00000112319|ENST00000355286|EYA4	nc|ENSG00000112319|O95677-5|EYA4	nc|ENSG00000112319|O95677-5|EYA4	MULTI-MSMS	A375_MHC_IP_R1	1	593.7166137695312	2	593.316763	1184.61897	-0.46424	-0.00027544	0.21968	0.00013034	-0.24456	-0.0001451	593.3168310601216	27.559	0.50569	27.559	27.381	27.887	0					25	9	4	0	0	0	0.053667	1	8356	8356		76.825	0	1	34421000			45838	3077	33404	33673	44792	44792					0.034047995347464166
RVKELYNTY	9	Unmodified	_RVKELYNTY_					0	0	0		nc|ENSG00000112319|O95677-5|EYA4;nc|ENSG00000112319|O95677-2|EYA4;nc|ENSG00000112319|O95677-4|EYA4;ENSG00000112319|ENST00000355286|EYA4	nc|ENSG00000112319|O95677-5|EYA4	nc|ENSG00000112319|O95677-5|EYA4	MULTI-SECPEP	A375_MHC_IP_R1	1	396.28021240234375	3	395.880267	1184.61897	-0.16529	-6.5433E-05	0.3352	0.0001327	0.16991	6.7264E-05	395.8803447984922	27.559	0.90714	27.559	27.331	28.238	0					35	17	4	0	0	0	0.47206	1	8365	8365		39.213	0	1	26187000			45839	3077	33404	33673	44793	44793					0.034047995347464166
RVKELYNTY	9	Unmodified	_RVKELYNTY_					0	0	0		nc|ENSG00000112319|O95677-5|EYA4;nc|ENSG00000112319|O95677-2|EYA4;nc|ENSG00000112319|O95677-4|EYA4;ENSG00000112319|ENST00000355286|EYA4	nc|ENSG00000112319|O95677-5|EYA4	nc|ENSG00000112319|O95677-5|EYA4	MULTI-SECPEP	A375_MHC_IP_R1	1	593.7166137695312	2	593.316763	1184.61897	-0.48205	-0.00028601	-0.056236	-3.3366E-05	-0.53829	-0.00031938	593.3165025617047	28.87	0.30194	28.87	28.694	28.996	0					10	5	2	0	0	0	0.56023	1	8968	8968		34.932	0	1	5454500			45840	3077	33404	33673	44794	44794					0.034047995347464166
RVKELYNTY	9	Unmodified	_RVKELYNTY_					0	0	0		nc|ENSG00000112319|O95677-5|EYA4;nc|ENSG00000112319|O95677-2|EYA4;nc|ENSG00000112319|O95677-4|EYA4;ENSG00000112319|ENST00000355286|EYA4	nc|ENSG00000112319|O95677-5|EYA4	nc|ENSG00000112319|O95677-5|EYA4	MULTI-SECPEP	A375_MHC_IP_R2	2	593.7171630859375	2	593.316763	1184.61897	-0.74298	-0.00044082	-0.27101	-0.00016079	-1.014	-0.00060162	593.3165903439221	28.099	0.35551	28.778	28.604	28.96	0.67857					12	6	3	0	0	0	0.70421	1	9685	9685		22.658	0	1	4732800			45841	3077	33404	33673	44795	44795					0.034047995347464166
RVKELYNTY	9	Unmodified	_RVKELYNTY_					0	0	0		nc|ENSG00000112319|O95677-5|EYA4;nc|ENSG00000112319|O95677-2|EYA4;nc|ENSG00000112319|O95677-4|EYA4;ENSG00000112319|ENST00000355286|EYA4	nc|ENSG00000112319|O95677-5|EYA4	nc|ENSG00000112319|O95677-5|EYA4	MULTI-SECPEP	A375_MHC_IP_R2	2	593.7164306640625	2	593.316763	1184.61897	-0.76682	-0.00045497	0.569	0.0003376	-0.19782	-0.00011737	593.3170414955908	26.887	0.46172	27.547	27.363	27.825	0.65992					26	8	4	0	0	0	0.30942	1	9118	9118		65.474	0	1	28747000			45842	3077	33404	33673	44796	44796					0.034047995347464166
RVKERDFFL	9	Unmodified	_RVKERDFFL_					0	0	0		ENST00000461096.6_1_1:109608842-109618580:-|nuORF	ENST00000461096.6_1_1:109608842-109618580:-|nuORF	ENST00000461096.6_1_1:109608842-109618580:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	404.2962341308594	3	403.89614	1208.66659	0.084672	3.4199E-05	-0.08772	-3.543E-05	-0.0030477	-1.231E-06	403.89607054759944	44.998	0.80723	44.998	44.727	45.534	0					42	15	4	0	0	0	0.29257	1	15696	15696		39.213	39.213	1	26410000			45843	12180	33405	33674	44797	44797					0.07060498525629555
RVKERDFFL	9	Unmodified	_RVKERDFFL_					0	0	0		ENST00000461096.6_1_1:109608842-109618580:-|nuORF	ENST00000461096.6_1_1:109608842-109618580:-|nuORF	ENST00000461096.6_1_1:109608842-109618580:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	404.29608154296875	3	403.89614	1208.66659	0.21489	8.6794E-05	-0.29858	-0.0001206	-0.083691	-3.3802E-05	403.89599113380484	43.938	0.75806	44.707	44.38	45.138	0.7691					43	14	4	0	0	0	0.25548	1	16345	16345		57.108	57.108	1	22298000			45844	12180	33405	33674	44798	44798					0.07060498525629555
RVKEYFSWLYY	11	Unmodified	_RVKEYFSWLYY_					0	0	0		ENSG00000196542|ENST00000620149|SPTSSB	ENSG00000196542|ENST00000620149|SPTSSB	ENSG00000196542|ENST00000620149|SPTSSB	MSMS	A375_MHC_IP_R1	1	518.6621704101562	3	518.59776	1552.77145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.999	1	47.999	47.499	48.499	0								0	0	0	0.1635	1	16907	16907		0.50596	0	1				45845	9055	33406	33675	44799	44799					0.01717575211523581
RVKKGFDFQW	10	Unmodified	_RVKKGFDFQW_					0	0	0		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MULTI-SECPEP	A375_MHC_IP_R2	2	438.3058776855469	3	437.571657	1309.69314	-0.59364	-0.00025976	0.039512	1.7289E-05	-0.55413	-0.00024247	437.90608090131235	51.847	0.51043	52.6	52.372	52.882	0.75225					15	9	2	0	0	0	0.86608	1	19543	19543		22.775	16.992	1	1989700			45846	878	33407	33676	44800	44800					0.05068187416941328
RVKKGFDFQW	10	Unmodified	_RVKKGFDFQW_					0	0	0		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MULTI-MATCH	A375_MHC_IP_R1	1		3	437.571657	1309.69314	-0.30601	-0.0001339	0.66559	0.00029124	0.35957	0.00015734	437.9061483973741	52.822	0.45653	52.822	52.592	53.048	0	0.11094	0.00058892	NaN	17.863	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2460100			45847	878	33407	33676							0.05068187416941328
RVKKRRRSIQK	11	Unmodified	_RVKKRRRSIQK_					0	0	0			REV__ENST00000558931.5_1_14:24614427-24614592:-|nuORF	REV__ENST00000558931.5_1_14:24614427-24614592:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	486.0545959472656	3	485.654937	1453.94298	-0.41229	-0.00020023	0.54746	0.00026588	0.13517	6.5645E-05	485.65510060508757	149.11	1.5436	149.13	148.32	149.87	0.018707					88	47	3	0	0	0	0.73934	1	57824	57824		0	0	1	200070	+		45848	26142	33408	33677	44801	44801					0.2341678981322275
RVKKRRRSIQK	11	Unmodified	_RVKKRRRSIQK_					0	0	0			REV__ENST00000558931.5_1_14:24614427-24614592:-|nuORF	REV__ENST00000558931.5_1_14:24614427-24614592:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	485.654937	1453.94298	-0.60823	-0.00029539	0.70223	0.00034104	0.093993	4.5648E-05	485.6552042117328	149.1	1.5937	149.1	148.21	149.81	0	-0.013863	9.4637E-05	NaN	0	90	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217230	+		45849	26142	33408	33677							0.2341678981322275
RVKKRRRSIQK	11	Unmodified	_RVKKRRRSIQK_					0	0	0			REV__ENST00000558931.5_1_14:24614427-24614592:-|nuORF	REV__ENST00000558931.5_1_14:24614427-24614592:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	485.654937	1453.94298	-0.41229	-0.00020023	0.54746	0.00026588	0.13517	6.5645E-05	485.65510060508757	149.11	1.5436	149.13	148.32	149.87	0.018707	0.013863	-0.00013085	NaN	0	88	47	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200070	+		45850	26142	33408	33677							0.2341678981322275
RVKLEERS	8	Unmodified	_RVKLEERS_					0	0	0		ENSG00000118308|ENST00000556887|IRAG2;nc|ENSG00000118308|Q12912|IRAG2	ENSG00000118308|ENST00000556887|IRAG2	ENSG00000118308|ENST00000556887|IRAG2	MULTI-MSMS	A375_MHC_IP_R2	2	509.1958923339844	2	508.795998	1015.57744	-0.69682	-0.00035454	0.70125	0.00035679	0.0044354	2.2567E-06	508.7961142417617	125.98	1.4143	126.28	125.67	127.09	0.2951					51	27	3	0	0	0	0.77624	1	49152	49152		8.5933	0	1	13233000			45851	3536	33409	33678	44802	44802					0.07027663566100273
RVKLEERS	8	Unmodified	_RVKLEERS_					0	0	0		ENSG00000118308|ENST00000556887|IRAG2;nc|ENSG00000118308|Q12912|IRAG2	ENSG00000118308|ENST00000556887|IRAG2	ENSG00000118308|ENST00000556887|IRAG2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	508.795998	1015.57744	-0.11768	-5.9874E-05	0.95303	0.0004849	0.83535	0.00042502	508.79655568891206	126.49	0.65533	126.49	126.05	126.71	0	0.10461	0.00018775	NaN	8.5933	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8995900			45852	3536	33409	33678							0.07027663566100273
RVKLEERS	8	Unmodified	_RVKLEERS_					0	0	0		ENSG00000118308|ENST00000556887|IRAG2;nc|ENSG00000118308|Q12912|IRAG2	ENSG00000118308|ENST00000556887|IRAG2	ENSG00000118308|ENST00000556887|IRAG2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	508.795998	1015.57744	-0.69682	-0.00035454	0.70125	0.00035679	0.0044354	2.2567E-06	508.7961142417617	125.98	1.4143	126.28	125.67	127.09	0.2951	-0.10461	-6.8451E-05	NaN	8.5933	51	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13233000			45853	3536	33409	33678							0.07027663566100273
RVKLHLIW	8	Unmodified	_RVKLHLIW_					0	0	0		ENST00000293362.7_1_17:40990986-40991166:+|nuORF	ENST00000293362.7_1_17:40990986-40991166:+|nuORF	ENST00000293362.7_1_17:40990986-40991166:+|nuORF	MSMS	A375_MHC_IP_R2	2	355.4598693847656	3	355.562433	1063.66547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.217	1	48.974	48.474	49.474	0.75737								0	0	0	0.16876	1	18101	18101		0.45834	0	1				45854	10483	33410	33679	44803	44803					0.13618328947381997
RVKLRTLLKIL	11	Unmodified	_RVKLRTLLKIL_					0	0	0			REV__nc|ENSG00000183780|Q8IY50|SLC35F3	REV__nc|ENSG00000183780|Q8IY50|SLC35F3	MSMS	A375_MHC_IP_R2	2	676.9794921875	2	676.976839	1351.93913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.31898	1	0.78943	0.28943	1.2894	0.47044								0	0	0	0.1636	1	109	109		0	0	1		+		45855	21779	33411	33680	44804	44804					0.27723307266819575
RVKNRFYFRIR	11	Unmodified	_RVKNRFYFRIR_					0	0	0			REV__ENSG00000171189|ENST00000327783|GRIK1	REV__ENSG00000171189|ENST00000327783|GRIK1	MULTI-SECPEP	A375_MHC_IP_R2	2	777.3919067382812	2	777.960043	1553.90553	-0.77042	-0.00059936	-0.53255	-0.0004143	-1.303	-0.0010137	777.9597570459969	149.41	0.87338	149.43	148.95	149.83	0.01825					57	30	3	0	0	0	1.0015	1	57906	57906		0	0	1	103520	+		45856	21050	33412	33681	44805	44805					0.15073698547575987
RVKPDPPHI	9	Unmodified	_RVKPDPPHI_					0	0	0		nc|ENSG00000131724|P78552-2|IL13RA1;ENSG00000131724|ENST00000371666|IL13RA1	nc|ENSG00000131724|P78552-2|IL13RA1	nc|ENSG00000131724|P78552-2|IL13RA1	MULTI-MSMS	A375_MHC_IP_R1	1	353.94146728515625	3	353.541697	1057.60326	-0.3404	-0.00012035	0.38523	0.00013619	0.044822	1.5847E-05	353.5417533634289	23.462	0.45972	23.462	23.227	23.687	0					20	8	3	0	0	0	0.12771	1	6481	6481		35.612	9.5916	1	4120700			45857	4344	33413	33682	44806	44806					0.07676557808372309
RVKPLHYISW	10	Unmodified	_RVKPLHYISW_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC;ENST00000473805.5_1_1:52281970-52293513:-|nuORF	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-SECPEP	A375_MHC_IP_R1	1	433.983642578125	3	433.583785	1297.72953	-0.31639	-0.00013718	0.31532	0.00013672	-0.0010721	-4.6483E-07	433.58386357736475	52.75	1.0664	52.75	52.438	53.505	0					54	20	5	0	0	0	0.79895	1	18730	18730		28.234	9.0897	1	24713000			45858	1676	33414	33683	44807	44807					0.09257064313646879
RVKPLHYISW	10	Unmodified	_RVKPLHYISW_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC;ENST00000473805.5_1_1:52281970-52293513:-|nuORF	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-SECPEP	A375_MHC_IP_R2	2	433.98358154296875	3	433.583785	1297.72953	-0.51448	-0.00022307	-0.15655	-6.7878E-05	-0.67103	-0.00029095	433.58368145940557	51.67	0.81398	52.422	52.118	52.932	0.75225					41	15	4	0	0	0	0.74263	1	19422	19422		27.088	7.9444	1	27643000			45859	1676	33414	33683	44808	44808					0.09257064313646879
RVKPNIFSY	9	Unmodified	_RVKPNIFSY_					0	0	0		ENSG00000091127|ENST00000469408|PUS7;nc|ENSG00000091127|Q96PZ0-2|PUS7	ENSG00000091127|ENST00000469408|PUS7	ENSG00000091127|ENST00000469408|PUS7	MULTI-MSMS	A375_MHC_IP_R1	1	375.61346435546875	3	375.213469	1122.61858	0.54742	0.0002054	-0.29725	-0.00011153	0.25017	9.3867E-05	375.21328653296825	47.898	0.70634	47.898	47.517	48.223	0					30	13	4	0	0	0	0.46465	1	16872	16872		21.537	11.386	1	6768300			45860	1969	33415	33684	44809	44809					0.06217424605551969
RVKPNIFSY	9	Unmodified	_RVKPNIFSY_					0	0	0		ENSG00000091127|ENST00000469408|PUS7;nc|ENSG00000091127|Q96PZ0-2|PUS7	ENSG00000091127|ENST00000469408|PUS7	ENSG00000091127|ENST00000469408|PUS7	MULTI-MSMS	A375_MHC_IP_R1	1	562.3465576171875	2	562.316566	1122.61858	-0.23602	-0.00013272	-0.39122	-0.00021999	-0.62724	-0.00035271	562.3163139991983	47.922	0.50414	47.922	47.618	48.122	0					30	9	4	0	0	0	0.46357	1	16945	16945		22.736	11.912	1	6662000			45861	1969	33415	33684	44810	44810					0.06217424605551969
RVKPNIFSY	9	Unmodified	_RVKPNIFSY_					0	0	0		ENSG00000091127|ENST00000469408|PUS7;nc|ENSG00000091127|Q96PZ0-2|PUS7	ENSG00000091127|ENST00000469408|PUS7	ENSG00000091127|ENST00000469408|PUS7	MULTI-MSMS	A375_MHC_IP_R2	2	375.6134033203125	3	375.213469	1122.61858	0.49319	0.00018505	-0.40698	-0.00015271	0.08621	3.2347E-05	375.21330884627827	46.966	0.66139	47.727	47.412	48.073	0.76128					35	12	4	0	0	0	0.32889	1	17592	17592		28.495	12.756	1	6753500			45862	1969	33415	33684	44811	44811					0.06217424605551969
RVKPNIFSY	9	Unmodified	_RVKPNIFSY_					0	0	0		ENSG00000091127|ENST00000469408|PUS7;nc|ENSG00000091127|Q96PZ0-2|PUS7	ENSG00000091127|ENST00000469408|PUS7	ENSG00000091127|ENST00000469408|PUS7	MULTI-SECPEP	A375_MHC_IP_R2	2	562.1075439453125	2	562.316566	1122.61858	-0.35887	-0.0002018	-0.19012	-0.00010691	-0.54899	-0.00030871	562.3165668737223	46.977	0.61025	47.738	47.412	48.022	0.76127					30	11	4	0	0	0	0.24324	1	17599	17599		53.833	24.751	1	7392600			45863	1969	33415	33684	44812	44812					0.06217424605551969
RVKRMAKAHI	10	Unmodified	_RVKRMAKAHI_					0	0	0			REV__ENSG00000140829|ENST00000268482|DHX38	REV__ENSG00000140829|ENST00000268482|DHX38	MULTI-SECPEP	A375_MHC_IP_R1	1	404.2962341308594	3	403.916881	1208.72881	0.11489	4.6407E-05	1.114	0.00044996	1.2289	0.00049637	403.91725008849016	45.005	0.30455	45.005	44.827	45.132	0					7	5	2	0	0	0	0.94163	1	15696	15696		1.7423	1.7423	1	1028700	+		45864	19230	33416	33685	44813	44813					0.13279946392935926
RVKRRKRKLRR	11	Unmodified	_RVKRRKRKLRR_					0	0	0			REV__ENST00000581170.5_1_18:5233099-5233147:-|nuORF	REV__ENST00000581170.5_1_18:5233099-5233147:-|nuORF	MSMS	A375_MHC_IP_R2	2	776.5550537109375	2	776.534575	1551.0546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.23	1	125.52	125.02	126.02	0.2951								0	0	0	0.1636	1	48734	48734		0	0	1		+		45865	26346	33417	33686	44814	44814					0.30111268960990856
RVKRRRKSLRR	11	Unmodified	_RVKRRRKSLRR_					0	0	0		nc|ENSG00000119778|Q9ULI0-2|ATAD2B;ENSG00000119778|ENST00000238789|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MSMS	A375_MHC_IP_R2	2	756.005859375	2	756.003108	1509.99166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.05	1	112.78	112.28	113.28	0.72458								0	0	0	0.1636	1	42246	42246		0	0	1				45866	3622	33418	33687	44815	44815					0.25706703172954803
RVKRSRRRPL	10	Unmodified	_RVKRSRRRPL_					0	0	0		ENSG00000167543|ENST00000301057|TP53I13	ENSG00000167543|ENST00000301057|TP53I13	ENSG00000167543|ENST00000301057|TP53I13	MSMS	A375_MHC_IP_R1	1	662.6259765625	2	662.431453	1322.84835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.69	1	139.69	139.19	140.19	0								0	0	0	0.15628	1	53683	53683		0.45834	0.057624	1				45867	7192	33419	33688	44816	44816					0.19984276061882156
RVKSELRSRSS	11	Unmodified	_RVKSELRSRSS_					0	0	0		ENSG00000006459|ENST00000397560|KDM7A;nc|ENSG00000006459|Q6ZMT4-2|KDM7A	ENSG00000006459|ENST00000397560|KDM7A	ENSG00000006459|ENST00000397560|KDM7A	MULTI-MSMS	A375_MHC_IP_R2	2	653.2730102539062	2	652.873299	1303.73205	-0.82888	-0.00054115	0.92572	0.00060437	0.096838	6.3223E-05	652.8733909176823	129.74	1.4153	129.95	129.19	130.6	0.2142					55	27	3	0	0	0	0.73557	1	51020	51020		4.1895	0	1	11408000			45868	915	33420	33689	44817	44817					0.09232867980654191
RVKSELRSRSS	11	Unmodified	_RVKSELRSRSS_					0	0	0		ENSG00000006459|ENST00000397560|KDM7A;nc|ENSG00000006459|Q6ZMT4-2|KDM7A	ENSG00000006459|ENST00000397560|KDM7A	ENSG00000006459|ENST00000397560|KDM7A	MULTI-MSMS	A375_MHC_IP_R2	2	435.9844055175781	3	435.584625	1303.73205	-0.26888	-0.00011712	0.12624	5.4987E-05	-0.14264	-6.2132E-05	435.58462482779925	130.98	1.272	131.2	130.7	131.98	0.21419					38	24	2	0	0	0	0.73557	1	51480	51480		3.5927	1.3399	1	6227500			45869	915	33420	33689	44818	44818					0.09232867980654191
RVKSELRSRSS	11	Unmodified	_RVKSELRSRSS_					0	0	0		ENSG00000006459|ENST00000397560|KDM7A;nc|ENSG00000006459|Q6ZMT4-2|KDM7A	ENSG00000006459|ENST00000397560|KDM7A	ENSG00000006459|ENST00000397560|KDM7A	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	435.584625	1303.73205	-0.39107	-0.00017035	0.28522	0.00012424	-0.10586	-4.611E-05	435.58462747879423	130.94	1.3163	130.94	130.62	131.93	0	-0.13005	0.00013263	NaN	3.5927	44	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14834000			45870	915	33420	33689							0.09232867980654191
RVKWFHLRLPW	11	Unmodified	_RVKWFHLRLPW_					0	0	0		LRRK1|p.S261F|1|0.54|ENSG00000154237|chr15:101008856-101008856|C/T|missense_variant	LRRK1|p.S261F|1|0.54|ENSG00000154237|chr15:101008856-101008856|C/T|missense_variant	LRRK1|p.S261F|1|0.54|ENSG00000154237|chr15:101008856-101008856|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	512.670654296875	3	513.301612	1536.88301	-0.56697	-0.00029103	0.73323	0.00037637	0.16626	8.5342E-05	513.301978242641	138.76	0.55138	138.82	138.7	139.25	0.059906					19	10	3	0	0	0	1.0015	1	54432	54432		0	0	1	2597300			45871	14321	33421	33690	44819	44819					0.13604099149961257
RVKWFHLRLPW	11	Unmodified	_RVKWFHLRLPW_					0	0	0		LRRK1|p.S261F|1|0.54|ENSG00000154237|chr15:101008856-101008856|C/T|missense_variant	LRRK1|p.S261F|1|0.54|ENSG00000154237|chr15:101008856-101008856|C/T|missense_variant	LRRK1|p.S261F|1|0.54|ENSG00000154237|chr15:101008856-101008856|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	513.301612	1536.88301	-0.82387	-0.00042289	0.77633	0.00039849	-0.047539	-2.4402E-05	513.3019169292476	138.83	0.75485	138.83	138.66	139.42	0	0.0025297	3.3548E-05	NaN	0	22	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2167200			45872	14321	33421	33690							0.13604099149961257
RVLAWLLVLW	10	Unmodified	_RVLAWLLVLW_					0	0	0			REV__ENSG00000139269|ENST00000266646|INHBE	REV__ENSG00000139269|ENST00000266646|INHBE	MULTI-MSMS	A375_MHC_IP_R2	2	634.990478515625	2	634.897526	1267.7805	-0.7556	-0.00047973	2.7748	0.0017617	2.0192	0.001282	635.4010909070764	105.31	0.15351	106.08	105.97	106.12	0.76308					4	2	2	0	0	0	0.7178	1	39798	39798		4.3292	0.38484	1	320440	+		45873	19145	33422	33691	44820	44820					0.15732013358501717
RVLDFDVKRKY	11	Unmodified	_RVLDFDVKRKY_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000480438.1_1_X:53564515-53565341:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	A375_MHC_IP_R1	1	360.60498046875	4	360.459585	1437.80923	0.1854	6.6829E-05	-0.76116	-0.00027437	-0.57576	-0.00020754	360.7100009347712	36.036	0.45783	36.036	35.83	36.287	0					16	8	3	0	0	0	0.99971	1	12098	12098		3.8459	3.7626	1	1029800			45874	1846	33423	33692	44821	44821					0.10784086196986209
RVLDFDVKRKY	11	Unmodified	_RVLDFDVKRKY_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000480438.1_1_X:53564515-53565341:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MATCH	A375_MHC_IP_R2	2		4	360.459585	1437.80923	-0.41743	-0.00015046	-0.015835	-5.708E-06	-0.43326	-0.00015617	360.4595541129855	34.989	0.3533	35.752	35.627	35.98	0.76338	-0.142	0.00027653	NaN	5.5233	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2866500			45875	1846	33423	33692							0.10784086196986209
RVLDGVVENF	10	Unmodified	_RVLDGVVENF_					0	0	0		nc|ENSG00000151458|Q9ULJ7-2|ANKRD50;ENSG00000151458|ENST00000504087|ANKRD50	nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	MULTI-MSMS	A375_MHC_IP_R1	1	574.8562622070312	2	574.308938	1146.60332	-0.10991	-6.312E-05	-0.19553	-0.00011229	-0.30544	-0.00017541	574.3087137303954	78.176	0.50768	78.176	77.844	78.352	0					16	9	2	0	0	0	0.14143	1	28513	28513		55.235	20.833	1	3375600			45876	5906	33424	33693	44822	44822					0.03588513017712103
RVLDGVVENF	10	Unmodified	_RVLDGVVENF_					0	0	0		nc|ENSG00000151458|Q9ULJ7-2|ANKRD50;ENSG00000151458|ENST00000504087|ANKRD50	nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	MULTI-SECPEP	A375_MHC_IP_R2	2	574.7085571289062	2	574.308938	1146.60332	-0.22403	-0.00012866	-0.20988	-0.00012054	-0.4339	-0.0002492	574.3088054235839	77.32	0.81041	78.063	77.657	78.468	0.74293					24	15	3	0	0	0	0.51289	1	29375	29375		59.052	26.267	1	4055500			45877	5906	33424	33693	44823	44823					0.03588513017712103
RVLDINPQV	9	Unmodified	_RVLDINPQV_					0	0	0		nc|ENSG00000166004|Q9C0D2-4|CEP295;nc|ENSG00000166004|Q9C0D2-2|CEP295;ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	nc|ENSG00000166004|Q9C0D2-4|CEP295	nc|ENSG00000166004|Q9C0D2-4|CEP295	MULTI-SECPEP	A375_MHC_IP_R1	1	527.7052612304688	2	527.306198	1052.59784	-0.44651	-0.00023545	-0.49022	-0.0002585	-0.93673	-0.00049395	527.305976444133	62.081	0.61419	62.081	61.737	62.351	0					22	11	3	0	0	0	0.4465	1	22391	22391		24.991	12.75	1	5081300			45878	7015	33425	33694	44824	44824					0.07364834225904815
RVLDPSRII	9	Unmodified	_RVLDPSRII_					0	0	0			REV__ENSG00000133704|ENST00000256079|IPO8	REV__ENSG00000133704|ENST00000256079|IPO8	MULTI-SECPEP	A375_MHC_IP_R2	2	357.6369323730469	3	356.888986	1067.64513	-0.32424	-0.00011572	-2.1179	-0.00075586	-2.4421	-0.00087157	356.88896081657737	55.748	0.3549	56.499	56.287	56.642	0.75015					8	6	2	0	0	0	0.73008	1	21000	21000		12.241	4.6317	1	516220	+		45879	18729	33426	33695	44825	44825					0.1140111349691324
RVLDQMRSF	9	Unmodified	_RVLDQMRSF_					0	0	0		ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	MULTI-MSMS	A375_MHC_IP_R1	1	576.7028198242188	2	576.303133	1150.59171	0.16812	9.6891E-05	-0.82644	-0.00047628	-0.65831	-0.00037939	576.3027506529138	48.309	0.35493	48.309	48.071	48.426	0					17	6	3	0	0	0	0.14795	2	17017	17017;17032		51.488	33.342	1	9043900			45880	2834	33427	33696	44826;44827	44826					0.02243992722742405
RVLDQMRSF	9	Unmodified	_RVLDQMRSF_					0	0	0		ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	MULTI-SECPEP	A375_MHC_IP_R1	1	384.6121520996094	3	384.537847	1150.59171	0.61195	0.00023532	0.69632	0.00026776	1.3083	0.00050308	384.5377113625374	48.3	0.30491	48.3	48.02	48.325	0					8	5	2	0	0	0	0.77901	1	17022	17022		3.5871	1.8448	1	2786500			45881	2834	33427	33696	44828	44828					0.02243992722742405
RVLDQMRSF	9	Unmodified	_RVLDQMRSF_					0	0	0		ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	MULTI-MSMS	A375_MHC_IP_R2	2	576.214111328125	2	576.303133	1150.59171	-0.0045856	-2.6427E-06	-0.49632	-0.00028603	-0.5009	-0.00028867	576.302953420287	47.41	0.50917	48.172	47.766	48.275	0.76127					18	9	3	0	0	0	0.57177	1	17792	17792		21.59	7.6841	1	11736000			45882	2834	33427	33696	44829	44829					0.02243992722742405
RVLDQMRSF	9	Unmodified	_RVLDQMRSF_					0	0	0		ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	MULTI-SECPEP	A375_MHC_IP_R2	2	384.6253967285156	3	384.537847	1150.59171	0.054775	2.1063E-05	0.69569	0.00026752	0.75046	0.00028858	384.5381008830947	47.368	0.3574	48.129	47.867	48.225	0.76128					9	6	2	0	0	0	0.53098	1	17743	17743		25.997	15.847	1	3564400			45883	2834	33427	33696	44830	44830					0.02243992722742405
RVLDQMRSF	9	Oxidation (M)	_RVLDQM(Oxidation (M))RSF_		RVLDQM(1)RSF		RVLDQM(41)RSF	0	0	1		ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	MULTI-MSMS	A375_MHC_IP_R2	2	584.7001953125	2	584.30059	1166.58663	-0.42218	-0.00024668	-0.50279	-0.00029378	-0.92498	-0.00054047	584.3005382403084	27.598	0.45553	28.276	28.047	28.502	0.67857					20	8	4	0	0	0	0.16286	1	9462	9462		40.725	20.31	1	9572400			45884	2834	33427	33697	44831	44831		130			0.009996888601108367
RVLDQMRSF	9	Oxidation (M)	_RVLDQM(Oxidation (M))RSF_					0	0	1		ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	584.30059	1166.58663	-0.28632	-0.0001673	-0.30462	-0.00017799	-0.59094	-0.00034529	584.3005553292649	28.34	0.55478	28.34	28.037	28.592	0	0.031849	8.8005E-05	NaN	40.725	26	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10328000			45885	2834	33427	33697				130			0.009996888601108367
RVLDQMRSF	9	Oxidation (M)	_RVLDQM(Oxidation (M))RSF_					0	0	1		ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	389.869485	1166.58663	-0.13305	-5.1873E-05	-0.42951	-0.00016745	-0.56256	-0.00021932	389.86937505881775	27.63	0.60819	28.308	27.996	28.604	0.67857	-0.040961	-5.6048E-05	NaN	49.742	29	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7116000			45886	2834	33427	33697				130			0.009996888601108367
RVLDVNNQSF	10	Unmodified	_RVLDVNNQSF_					0	0	0		nc|ENSG00000173848|Q7Z628-2|NET1;ENST00000486354.1_1_10:5488686-5494790:+|nuORF	nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	MULTI-MSMS	A375_MHC_IP_R2	2	596.7090454101562	2	596.309469	1190.60439	-0.94334	-0.00056252	0.84605	0.00050451	-0.097291	-5.8016E-05	596.3096815304743	52.214	0.35451	52.966	52.78	53.134	0.75225					13	6	3	0	0	0	0.35113	1	19708	19708		37.075	14.338	1	2393100			45887	14772	33428	33698	44832	44832					0.0167072738661318
RVLDVNNQSF	10	Unmodified	_RVLDVNNQSF_					0	0	0		nc|ENSG00000173848|Q7Z628-2|NET1;ENST00000486354.1_1_10:5488686-5494790:+|nuORF	nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	MULTI-MATCH	A375_MHC_IP_R1	1		2	596.309469	1190.60439	-0.59855	-0.00035692	0.82315	0.00049085	0.2246	0.00013393	596.3099212088156	52.961	0.30303	52.961	52.796	53.099	0	-0.0028253	-1.967E-05	NaN	37.075	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1472300			45888	14772	33428	33698							0.0167072738661318
RVLEGMKGLF	10	Unmodified	_RVLEGMKGLF_					0	0	0		nc|ENSG00000160688|Q8NFF5-4|FLAD1;nc|ENSG00000160688|Q8NFF5-5|FLAD1;nc|ENSG00000160688|Q8NFF5-3|FLAD1;nc|ENSG00000160688|Q8NFF5-2|FLAD1;ENSG00000160688|ENST00000292180|FLAD1	nc|ENSG00000160688|Q8NFF5-4|FLAD1	nc|ENSG00000160688|Q8NFF5-4|FLAD1	MULTI-MSMS	A375_MHC_IP_R1	1	383.9190979003906	3	383.886476	1148.6376	0.16679	6.4028E-05	0.1009	3.8736E-05	0.26769	0.00010276	383.886489787315	39.55	2.1812	39.55	38.933	41.114	0					82	42	5	0	0	0	0.71361	1	14062	14062		3.3196	0	1	52572000			45889	6432	33429	33699	44833	44833					0.06922637904972362
RVLEKNILF	9	Unmodified	_RVLEKNILF_					0	0	0		ENST00000301919.8_1_11:105892354-105892552:-|nuORF	ENST00000301919.8_1_11:105892354-105892552:-|nuORF	ENST00000301919.8_1_11:105892354-105892552:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	566.747314453125	2	566.347866	1130.68118	-0.72245	-0.00040916	0.34349	0.00019454	-0.37896	-0.00021462	566.3477463274248	61.139	0.40195	61.884	61.668	62.07	0.74503					12	7	2	0	0	0	0.73577	1	23222	23222		19.362	0	1	1887200			45890	10549	33430	33700	44834	44834					0.12106570673768147
RVLEKTKQF	9	Unmodified	_RVLEKTKQF_					0	0	0		nc|ENSG00000090861|P49588-2|AARS1;ENSG00000090861|ENST00000261772|AARS1;ENST00000569825.1_1_16:70287541-70292096:-|nuORF	nc|ENSG00000090861|P49588-2|AARS1	nc|ENSG00000090861|P49588-2|AARS1	MULTI-MSMS	A375_MHC_IP_R1	1	383.9645690917969	3	383.564391	1147.67134	0.19295	7.401E-05	-0.24524	-9.4065E-05	-0.052286	-2.0055E-05	383.564432725358	19.603	0.66159	19.603	19.318	19.98	0					24	12	3	0	0	0	0.058715	2	4915	4889;4915		60.899	30.196	1	4758500			45891	14498	33431	33701	44835;44836	44836					0.10341382668389087
RVLELIPQI	9	Unmodified	_RVLELIPQI_					0	0	0		ENST00000404284.6_1_22:35717823-35727385:+|nuORF;nc|ENSG00000100284|O60784-4|TOM1;ENST00000424387.5_1_22:35695884-35743199:+|nuORF;ENSG00000100284|ENST00000449058|TOM1;nc|ENSG00000100284|O60784-2|TOM1;nc|ENSG00000100284|O60784-3|TOM1;ENST00000491987.1_1_22:35723272-35729230:+|nuORF	ENST00000404284.6_1_22:35717823-35727385:+|nuORF	ENST00000404284.6_1_22:35717823-35727385:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	541.2426147460938	2	540.842416	1079.67028	-0.38145	-0.0002063	-0.011652	-6.3019E-06	-0.3931	-0.0002126	541.3439069218862	107.75	0.50892	107.75	107.54	108.05	0					15	9	2	0	0	0	0.36834	1	39588	39588		26.268	2.2476	1	2739000			45892	2151	33432	33702	44837	44837					0.13363168299497374
RVLELLKQY	9	Unmodified	_RVLELLKQY_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	A375_MHC_IP_R1	1	388.30438232421875	3	387.904524	1160.69174	0.27321	0.00010598	0.085244	3.3066E-05	0.35845	0.00013904	387.9044752938549	63.3	0.35625	63.3	63.121	63.477	0					9	6	2	0	0	0	0.71416	1	22909	22909		3.5871	1.6807	1	1256400			45893	1262	33433	33703	44838	44838					0.11782553328202994
RVLELLKQY	9	Unmodified	_RVLELLKQY_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-SECPEP	A375_MHC_IP_R1	1	581.6987915039062	2	581.353148	1160.69174	-0.15903	-9.2451E-05	0.18181	0.0001057	0.022786	1.3247E-05	581.3532200007764	63.267	0.35625	63.267	63.121	63.477	0					10	6	2	0	0	0	0.61452	1	22845	22845		26.268	3.5319	1	1204700			45894	1262	33433	33703	44839	44839					0.11782553328202994
RVLELLKQY	9	Unmodified	_RVLELLKQY_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MATCH	A375_MHC_IP_R2	2		3	387.904524	1160.69174	-0.30701	-0.00011909	0.6167	0.00023922	0.30969	0.00012013	387.90466951477606	62.279	0.35654	63.022	62.824	63.18	0.74263	-0.13873	0.00022085	NaN	3.5871	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	732150			45895	1262	33433	33703							0.11782553328202994
RVLGVSDVITW	11	Unmodified	_RVLGVSDVITW_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L;nc|ENSG00000163840|Q8TDB6-2|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	MULTI-SECPEP	A375_MHC_IP_R1	1	623.253662109375	2	622.853512	1243.69247	-0.2621	-0.00016325	-0.20016	-0.00012467	-0.46226	-0.00028792	622.8534883315534	107.05	0.61317	107.05	106.62	107.24	0					23	11	3	0	0	0	0.79665	1	39278	39278		28.234	12.985	1	3707200			45896	6733	33434	33704	44840	44840					0.0803734797721063
RVLGVSDVITW	11	Unmodified	_RVLGVSDVITW_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L;nc|ENSG00000163840|Q8TDB6-2|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	MULTI-SECPEP	A375_MHC_IP_R2	2	623.2525024414062	2	622.853512	1243.69247	-0.77174	-0.00048068	-0.59013	-0.00036756	-1.3619	-0.00084824	622.85341064157	106.17	0.55993	106.93	106.58	107.14	0.75977					16	10	2	0	0	0	0.68458	1	40118	40118		42.312	11.044	1	2294600			45897	6733	33434	33704	44841	44841					0.0803734797721063
RVLIKVFRK	9	Unmodified	_RVLIKVFRK_					0	0	0		ENSG00000225110|ENST00000436629|PNMA6F	ENSG00000225110|ENST00000436629|PNMA6F	ENSG00000225110|ENST00000436629|PNMA6F	MULTI-SECPEP	A375_MHC_IP_R2	2	387.66656494140625	3	386.932637	1157.77608	-0.15279	-5.9119E-05	-0.89896	-0.00034784	-1.0517	-0.00040695	387.26663982651377	27.799	0.35404	28.477	28.301	28.655	0.67857					10	6	2	0	0	0	0.81448	1	9582	9582		2.086	2.086	1	3343200			45898	9694	33435	33705	44842	44842					0.2035054893558481
RVLISTDVW	9	Unmodified	_RVLISTDVW_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78110025-78110175:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-SECPEP	A375_MHC_IP_R1	1	545.2088623046875	2	544.808574	1087.60259	-0.76164	-0.00041495	0.48353	0.00026343	-0.2781	-0.00015151	544.8087899357764	85.591	1.0135	85.591	85.21	86.224	0					35	19	3	0	0	0	0.20645	1	31334	31334		56.177	29.293	1	13858000			45899	5252	33436	33706	44843	44843					0.062297183686723656
RVLISTDVW	9	Unmodified	_RVLISTDVW_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78110025-78110175:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	A375_MHC_IP_R2	2	545.381103515625	2	544.808574	1087.60259	-0.69124	-0.00037659	0.36505	0.00019888	-0.32619	-0.00017771	544.8087650668089	84.711	0.81323	85.447	85.171	85.984	0.73601					34	15	4	0	0	0	0.13728	1	32237	32237		47.749	15.443	1	14211000			45900	5252	33436	33706	44844	44844					0.062297183686723656
RVLKKVRRKIR	11	Unmodified	_RVLKKVRRKIR_					0	0	0		ENST00000468845.1_1_1:153945363-153946538:+|nuORF;nc|ENSG00000143578|Q8TEY5-2|CREB3L4;ENSG00000143578|ENST00000368607|CREB3L4	ENST00000468845.1_1_1:153945363-153946538:+|nuORF	ENST00000468845.1_1_1:153945363-153946538:+|nuORF	MSMS	A375_MHC_IP_R1	1	726.7455444335938	2	726.509703	1451.00485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.59	1	116.59	116.09	117.09	0								0	0	0	0.1636	1	42771	42771		0	0	1				45901	5411	33437	33707	44845	44845					0.2973914123231225
RVLLNVIH	8	Unmodified	_RVLLNVIH_					0	0	0		nc|ENSG00000085511|Q9Y6R4-2|MAP3K4;ENSG00000085511|ENST00000392142|MAP3K4	nc|ENSG00000085511|Q9Y6R4-2|MAP3K4	nc|ENSG00000085511|Q9Y6R4-2|MAP3K4	MULTI-MSMS	A375_MHC_IP_R1	1	482.7082824707031	2	482.308544	962.602535	-0.70454	-0.00033981	0.25578	0.00012336	-0.44877	-0.00021644	482.3085164236306	149.84	1.0956	149.84	148.91	150	0					108	44	3	0	0	0	0.77797	1	57151	57151		2.3027	0	1	210090			45902	1815	33438	33708	44846	44846					0.1197376315932388
RVLNVQGKQF	10	Unmodified	_RVLNVQGKQF_					0	0	0		ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MULTI-SECPEP	A375_MHC_IP_R1	1	396.2763977050781	3	396.899773	1187.67749	-0.11937	-4.7377E-05	-0.60442	-0.00023989	-0.72378	-0.00028727	397.2338443356935	33.366	0.45756	33.366	33.19	33.648	0					14	8	3	0	0	0	0.89761	1	10910	10910		7.4771	5.1943	1	1960900			45903	9248	33439	33709	44847	44847					0.09115900899882945
RVLNVQGKQF	10	Unmodified	_RVLNVQGKQF_					0	0	0		ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MULTI-MSMS	A375_MHC_IP_R2	2	397.2997131347656	3	396.899773	1187.67749	-0.15158	-6.0161E-05	-0.19868	-7.8856E-05	-0.35026	-0.00013902	396.89973350346634	32.502	0.35645	33.239	33.01	33.367	0.73692					12	6	3	0	0	0	0.39901	1	11607	11607		34.222	23.906	1	3832500			45904	9248	33439	33709	44848	44848					0.09115900899882945
RVLPHPNRI	9	Unmodified	_RVLPHPNRI_					0	0	0		nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3;ENST00000540447.5_1_12:10856597-10862620:-|nuORF	nc|ENSG00000060138|P16989-3|YBX3	nc|ENSG00000060138|P16989-3|YBX3	MULTI-MSMS	A375_MHC_IP_R1	1	368.29296875	3	367.892842	1100.6567	0.1714	6.3058E-05	0.18335	6.7451E-05	0.35475	0.00013051	367.89287604610286	24.644	0.35441	24.644	24.498	24.852	0					16	6	3	0	0	0	0.12748	1	7047	7047		45.74	21.95	1	12744000			45905	1307	33440	33710	44849	44849					0.11039355310890642
RVLPHPNRI	9	Unmodified	_RVLPHPNRI_					0	0	0		nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3;ENST00000540447.5_1_12:10856597-10862620:-|nuORF	nc|ENSG00000060138|P16989-3|YBX3	nc|ENSG00000060138|P16989-3|YBX3	MULTI-MSMS	A375_MHC_IP_R2	2	368.29278564453125	3	367.892842	1100.6567	-0.060264	-2.2171E-05	0.13465	4.9535E-05	0.074381	2.7364E-05	367.89287741123144	23.933	0.45907	24.563	24.384	24.843	0.63014					13	8	2	0	0	0	0.095851	1	7797	7797		51.415	27.625	1	14651000			45906	1307	33440	33710	44850	44850					0.11039355310890642
RVLPKRKVVRL	11	Unmodified	_RVLPKRKVVRL_					0	0	0			REV__REEP4|p.P233L|1|0.37|ENSG00000168476|chr8:22138649-22138649|G/A|missense_variant	REV__REEP4|p.P233L|1|0.37|ENSG00000168476|chr8:22138649-22138649|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	682.5247802734375	2	682.472255	1362.92996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.978	1	92.978	92.478	93.478	0								0	0	0	0.1636	1	34174	34174		0	0	1		+		45907	27879	33441	33711	44851	44851					0.26300958701108357
RVLPMQLHL	9	Unmodified	_RVLPMQLHL_					0	0	0		ENST00000354204.10_1_2:97260765-97261026:-|nuORF	ENST00000354204.10_1_2:97260765-97261026:-|nuORF	ENST00000354204.10_1_2:97260765-97261026:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	369.5951232910156	3	369.55495	1105.64302	0.22679	8.3811E-05	-0.10637	-3.9308E-05	0.12042	4.4503E-05	369.5548757847303	27.406	0.4561	27.406	27.128	27.584	0					12	8	2	0	0	0	0.64808	1	8272	8272		7.609	0.97858	1	3064500			45908	10934	33442	33712	44852	44852					0.09442361487435846
RVLPPNWKY	9	Unmodified	_RVLPPNWKY_					0	0	0		ENSG00000110700|ENST00000525634|RPS13;ENST00000526895.5_1_11:17095982-17099246:-|nuORF;ENST00000531908.5_1_11:17095982-17097186:-|nuORF	ENSG00000110700|ENST00000525634|RPS13	ENSG00000110700|ENST00000525634|RPS13	MULTI-MSMS	A375_MHC_IP_R1	1	391.95751953125	3	391.557348	1171.65021	0.23124	9.0543E-05	0.34129	0.00013363	0.57253	0.00022418	391.55739674299167	50.986	1.5737	50.986	50.613	52.186	0					54	30	2	0	0	0	0.26169	2	18102	17959;18102		33.445	25.836	1	2231000			45909	2940	33443	33713	44853;44854	44854					0.07125417359520725
RVLPPNWKY	9	Unmodified	_RVLPPNWKY_					0	0	0		ENSG00000110700|ENST00000525634|RPS13;ENST00000526895.5_1_11:17095982-17099246:-|nuORF;ENST00000531908.5_1_11:17095982-17097186:-|nuORF	ENSG00000110700|ENST00000525634|RPS13	ENSG00000110700|ENST00000525634|RPS13	MULTI-MSMS	A375_MHC_IP_R1	1	587.232421875	2	586.832383	1171.65021	-0.21547	-0.00012645	0.18034	0.00010583	-0.035134	-2.0618E-05	586.8323324586017	51.093	2.1853	51.093	50.101	52.287	0					69	42	3	0	0	0	0.1915	1	18011	18011		41.84	33.929	1	2522400			45910	2940	33443	33713	44855	44855					0.07125417359520725
RVLPPNWKY	9	Unmodified	_RVLPPNWKY_					0	0	0		ENSG00000110700|ENST00000525634|RPS13;ENST00000526895.5_1_11:17095982-17099246:-|nuORF;ENST00000531908.5_1_11:17095982-17097186:-|nuORF	ENSG00000110700|ENST00000525634|RPS13	ENSG00000110700|ENST00000525634|RPS13	MULTI-MSMS	A375_MHC_IP_R2	2	391.957275390625	3	391.557348	1171.65021	-0.39321	-0.00015397	0.86229	0.00033764	0.46908	0.00018367	391.55746159067303	50.341	1.622	51.095	50.193	51.815	0.75406					62	31	3	0	0	0	0.26169	1	18823	18823		33.445	33.445	1	1662200			45911	2940	33443	33713	44856	44856					0.07125417359520725
RVLPPNWKY	9	Unmodified	_RVLPPNWKY_					0	0	0		ENSG00000110700|ENST00000525634|RPS13;ENST00000526895.5_1_11:17095982-17099246:-|nuORF;ENST00000531908.5_1_11:17095982-17097186:-|nuORF	ENSG00000110700|ENST00000525634|RPS13	ENSG00000110700|ENST00000525634|RPS13	MULTI-SECPEP	A375_MHC_IP_R2	2	587.2315063476562	2	586.832383	1171.65021	-0.74762	-0.00043873	0.12087	7.0928E-05	-0.62676	-0.0003678	586.8324171587307	50.077	2.3309	50.831	50.042	52.373	0.75406					72	45	2	0	0	0	0.72623	1	18975	18975		25.399	14.575	1	2933400			45912	2940	33443	33713	44857	44857					0.07125417359520725
RVLPPSALQSV	11	Unmodified	_RVLPPSALQSV_					0	0	0		nc|ENSG00000178999|Q96GD4-4|AURKB;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB;nc|ENSG00000178999|Q96GD4-5|AURKB	nc|ENSG00000178999|Q96GD4-4|AURKB	nc|ENSG00000178999|Q96GD4-4|AURKB	MULTI-SECPEP	A375_MHC_IP_R1	1	584.2481079101562	2	583.84823	1165.68191	-0.28585	-0.00016689	-0.028205	-1.6467E-05	-0.31405	-0.00018336	583.8481357226317	64.679	1.9333	64.679	63.58	65.514	0					48	37	2	0	0	0	0.92254	1	23402	23402		18.721	4.8152	1	1339200			45913	8196	33444	33714	44858	44858					0.10569365322771773
RVLPPSALQSV	11	Unmodified	_RVLPPSALQSV_					0	0	0		nc|ENSG00000178999|Q96GD4-4|AURKB;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB;nc|ENSG00000178999|Q96GD4-5|AURKB	nc|ENSG00000178999|Q96GD4-4|AURKB	nc|ENSG00000178999|Q96GD4-4|AURKB	MULTI-SECPEP	A375_MHC_IP_R2	2	584.2228393554688	2	583.84823	1165.68191	-0.37606	-0.00021956	-0.23668	-0.00013819	-0.61275	-0.00035775	583.8481544582476	63.764	1.7792	64.505	63.582	65.361	0.74022					55	34	2	0	0	0	0.31903	1	24101	24101		51.488	34.045	1	1428100			45914	8196	33444	33714	44859	44859					0.10569365322771773
RVLPPTRQAF	10	Unmodified	_RVLPPTRQAF_					0	0	0		ENST00000579480.1_1_18:75695260-75695575:-|nuORF	ENST00000579480.1_1_18:75695260-75695575:-|nuORF	ENST00000579480.1_1_18:75695260-75695575:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	396.2763977050781	3	395.568135	1183.68258	-0.074311	-2.9395E-05	-0.43133	-0.00017062	-0.50565	-0.00020002	395.9024538851296	33.338	0.30581	33.338	33.19	33.496	0					9	5	2	0	0	0	0.94163	1	10910	10910		0.62683	0	1	1139600			45915	13662	33445	33715	44860	44860					0.09808204762498463
RVLPQGYGW	9	Unmodified	_RVLPQGYGW_					0	0	0		nc|ENSG00000146828|Q9BXP2-3|SLC12A9;nc|ENSG00000146828|Q9BXP2-4|SLC12A9;ENSG00000146828|ENST00000354161|SLC12A9;nc|ENSG00000146828|Q9BXP2-2|SLC12A9	nc|ENSG00000146828|Q9BXP2-3|SLC12A9	nc|ENSG00000146828|Q9BXP2-3|SLC12A9	MULTI-SECPEP	A375_MHC_IP_R1	1	538.6873779296875	2	538.287808	1074.56106	-0.5567	-0.00029967	-0.22454	-0.00012087	-0.78124	-0.00042053	538.2878301601661	71.117	0.61517	71.117	70.698	71.313	0					19	11	3	0	0	0	0.28475	1	25846	25846		48.346	27.475	1	3177800			45916	5638	33446	33716	44861	44861					0.02676582399999461
RVLPQGYGW	9	Unmodified	_RVLPQGYGW_					0	0	0		nc|ENSG00000146828|Q9BXP2-3|SLC12A9;nc|ENSG00000146828|Q9BXP2-4|SLC12A9;ENSG00000146828|ENST00000354161|SLC12A9;nc|ENSG00000146828|Q9BXP2-2|SLC12A9	nc|ENSG00000146828|Q9BXP2-3|SLC12A9	nc|ENSG00000146828|Q9BXP2-3|SLC12A9	MULTI-SECPEP	A375_MHC_IP_R2	2	538.6883544921875	2	538.287808	1074.56106	-0.81411	-0.00043822	0.095496	5.1404E-05	-0.71861	-0.00038682	538.2878494813286	70.408	0.40768	71.142	70.895	71.302	0.73421					13	7	2	0	0	0	0.16229	1	26681	26681		57.471	36.6	1	2388600			45917	5638	33446	33716	44862	44862					0.02676582399999461
RVLPSNYNF	9	Unmodified	_RVLPSNYNF_					0	0	0		ENSG00000108963|ENST00000263083|DPH1;nc|ENSG00000108963|Q9BZG8-1|DPH1;ENST00000576129.5_1_17:1936818-1940251:+|nuORF;nc|ENSG00000108963|Q9BZG8-5|DPH1	ENSG00000108963|ENST00000263083|DPH1	ENSG00000108963|ENST00000263083|DPH1	MULTI-SECPEP	A375_MHC_IP_R1	1	555.6903076171875	2	555.290548	1108.56654	-0.51414	-0.0002855	-2.6306	-0.0014608	-3.1448	-0.0017463	555.2890602494012	61.78	0.7658	61.78	61.585	62.351	0					27	14	2	0	0	0	0.20451	1	22305	22305		49.554	31.408	1	5514700			45918	2848	33447	33717	44863	44863					0.01660261191796053
RVLPSNYNF	9	Unmodified	_RVLPSNYNF_					0	0	0		ENSG00000108963|ENST00000263083|DPH1;nc|ENSG00000108963|Q9BZG8-1|DPH1;ENST00000576129.5_1_17:1936818-1940251:+|nuORF;nc|ENSG00000108963|Q9BZG8-5|DPH1	ENSG00000108963|ENST00000263083|DPH1	ENSG00000108963|ENST00000263083|DPH1	MULTI-SECPEP	A375_MHC_IP_R2	2	555.6893310546875	2	555.290548	1108.56654	-1.0821	-0.00060089	-2.1212	-0.0011779	-3.2033	-0.0017788	555.2890281854044	60.989	1.2629	61.734	61.16	62.423	0.74503					40	24	3	0	0	0	0.13208	1	23093	23093		66.457	34.151	1	6227000			45919	2848	33447	33717	44864	44864					0.01660261191796053
RVLPYPFTHHW	11	Unmodified	_RVLPYPFTHHW_					0	0	0		nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A	nc|ENSG00000156697|Q9BVJ6-3|UTP14A	nc|ENSG00000156697|Q9BVJ6-3|UTP14A	MULTI-MSMS	A375_MHC_IP_R1	1	485.6568298339844	3	484.922689	1451.74624	-0.38798	-0.00018814	-0.0051126	-2.4792E-06	-0.39309	-0.00019062	484.92269071180675	65.437	0.71474	65.437	65.206	65.921	0					39	13	4	0	0	0	0.13072	1	23668	23668		64.688	55.444	1	16036000			45920	6206	33448	33718	44865	44865					0.03843565199599652
RVLPYPFTHHW	11	Unmodified	_RVLPYPFTHHW_					0	0	0		nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A	nc|ENSG00000156697|Q9BVJ6-3|UTP14A	nc|ENSG00000156697|Q9BVJ6-3|UTP14A	MULTI-MSMS	A375_MHC_IP_R2	2	485.6571044921875	3	484.922689	1451.74624	-0.53763	-0.00026071	0.041376	2.0064E-05	-0.49626	-0.00024065	484.9226079630644	64.496	0.81538	65.236	64.902	65.717	0.74023					47	15	4	0	0	0	0.22936	1	24419	24419		52.193	42.649	1	16345000			45921	6206	33448	33718	44866	44866					0.03843565199599652
RVLQLHRVF	9	Unmodified	_RVLQLHRVF_					0	0	0		ENSG00000253368|ENST00000522111|TRNP1	ENSG00000253368|ENST00000522111|TRNP1	ENSG00000253368|ENST00000522111|TRNP1	MULTI-SECPEP	A375_MHC_IP_R1	1	390.308349609375	3	389.908492	1166.70365	0.16838	6.5653E-05	-0.20003	-7.7994E-05	-0.03165	-1.2341E-05	389.90841778208977	46.331	0.40109	46.331	46.094	46.495	0					17	7	3	0	0	0	0.71341	1	16257	16257		12.873	12.873	1	2367100			45922	9859	33449	33719	44867	44867					0.1269621486203505
RVLQLHRVF	9	Unmodified	_RVLQLHRVF_					0	0	0		ENSG00000253368|ENST00000522111|TRNP1	ENSG00000253368|ENST00000522111|TRNP1	ENSG00000253368|ENST00000522111|TRNP1	MULTI-SECPEP	A375_MHC_IP_R2	2	390.3083190917969	3	389.908492	1166.70365	-0.25639	-9.9969E-05	-1.1361	-0.00044296	-1.3925	-0.00054293	389.9084226682246	45.144	0.40598	45.91	45.643	46.049	0.7662					22	7	5	0	0	0	0.35487	1	16866	16866		27.223	18.937	1	2566600			45923	9859	33449	33719	44868	44868					0.1269621486203505
RVLQVIQAIQ	10	Unmodified	_RVLQVIQAIQ_					0	0	0			REV__ENSG00000158486|ENST00000698260|DNAH3	REV__ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	A375_MHC_IP_R1	1	390.3119201660156	3	389.91179	1166.71354	-0.20359	-7.9382E-05	0.20588	8.0274E-05	0.0022883	8.9223E-07	389.9117966468624	29.63	1.5044	29.63	29.353	30.857	0					64	29	3	0	0	0	0.70174	1	9557	9557		11.518	2.2741	1	23564000	+		45924	20079	33450	33720	44869	44869					0.1368535807673652
RVLQVIQAIQ	10	Unmodified	_RVLQVIQAIQ_					0	0	0			REV__ENSG00000158486|ENST00000698260|DNAH3	REV__ENSG00000158486|ENST00000698260|DNAH3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	389.91179	1166.71354	-0.91201	-0.0003556	0.4117	0.00016053	-0.50031	-0.00019508	389.9119028663622	28.891	1.2512	29.59	29.183	30.434	0.69872	-0.020347	0.00013597	NaN	11.518	44	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18902000	+		45925	20079	33450	33720							0.1368535807673652
RVLRDLRIF	9	Unmodified	_RVLRDLRIF_					0	0	0		ENSG00000072778|ENST00000356839|ACADVL;nc|ENSG00000072778|P49748-3|ACADVL;nc|ENSG00000072778|P49748-2|ACADVL;ENST00000583850.5_1_17:7127146-7127844:+|nuORF	ENSG00000072778|ENST00000356839|ACADVL	ENSG00000072778|ENST00000356839|ACADVL	MULTI-MSMS	A375_MHC_IP_R1	1	396.9840087890625	3	396.583897	1186.72986	0.0086842	3.444E-06	0.20947	8.3072E-05	0.21815	8.6516E-05	396.5839254476274	62.814	0.66752	62.814	62.505	63.173	0					25	12	4	0	0	0	0.26911	2	22701	22667;22701		32.898	26.267	1	2092400			45926	1546	33451	33721	44870;44871	44871					0.14396484033477464
RVLRDLRIF	9	Unmodified	_RVLRDLRIF_					0	0	0		ENSG00000072778|ENST00000356839|ACADVL;nc|ENSG00000072778|P49748-3|ACADVL;nc|ENSG00000072778|P49748-2|ACADVL;ENST00000583850.5_1_17:7127146-7127844:+|nuORF	ENSG00000072778|ENST00000356839|ACADVL	ENSG00000072778|ENST00000356839|ACADVL	MULTI-MSMS	A375_MHC_IP_R2	2	396.983642578125	3	396.583897	1186.72986	-0.43798	-0.0001737	-0.27502	-0.00010907	-0.713	-0.00028277	396.58378229198854	61.577	0.50292	62.322	62.02	62.523	0.74504					17	9	2	0	0	0	0.25114	1	23339	23339		34.222	18.973	1	2963100			45927	1546	33451	33721	44872	44872					0.14396484033477464
RVLRETKPI	9	Unmodified	_RVLRETKPI_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|457|18.28|0.76|4.59|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MSMS	A375_MHC_IP_R2	2	557.552734375	2	556.35094	1110.68733	-0.69635	-0.00038741	0.37623	0.00020932	-0.32011	-0.0001781	556.3510702420484	69.793	0.55975	70.527	70.284	70.844	0.73421					19	10	3	0	0	0	0.6343	1	26505	26505		13.042	5.7532	1	3348300			45928	440	33452	33722	44873	44873					0.13641088905251308
RVLRPLKIIKR	11	Unmodified	_RVLRPLKIIKR_					0	0	0		CACNA1E|p.T1268I|1|0.3|ENSG00000198216|chr1:181752214-181752214|C/T|missense_variant;CACNA1B|p.T1261I|1|0.22|ENSG00000148408|chr9:138052163-138052163|C/T|missense_variant	CACNA1E|p.T1268I|1|0.3|ENSG00000198216|chr1:181752214-181752214|C/T|missense_variant	CACNA1E|p.T1268I|1|0.3|ENSG00000198216|chr1:181752214-181752214|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	696.4908447265625	2	696.487905	1390.96126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.14947	1	0.61991	0.11991	1.1199	0.47044								0	0	0	0.1636	1	54	54		0	0	1				45929	275	33453	33723	44874	44874					0.28141531735172975
RVLSDLDQKW	10	Unmodified	_RVLSDLDQKW_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	MULTI-MSMS	A375_MHC_IP_R1	1	630.7406005859375	2	630.340769	1258.66699	-0.65014	-0.00040981	0.31571	0.00019901	-0.33443	-0.0002108	630.3408323306419	54.974	0.50756	54.974	54.72	55.228	0					20	9	3	0	0	0	0.056415	2	19633	19633;19658		92.201	55.695	1	7177000			45930	1631	33454	33724	44875;44876	44875					0.04799873454794579
RVLSDLDQKW	10	Unmodified	_RVLSDLDQKW_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	MULTI-MSMS	A375_MHC_IP_R1	1	420.9627990722656	3	420.562938	1258.66699	0.041037	1.7259E-05	-0.11895	-5.0025E-05	-0.077911	-3.2767E-05	420.56284777734743	54.986	0.45729	54.986	54.771	55.228	0					22	8	4	0	0	0	0.0010243	1	19636	19636		146.57	122.77	1	7292500			45931	1631	33454	33724	44877	44877					0.04799873454794579
RVLSDLDQKW	10	Unmodified	_RVLSDLDQKW_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	MULTI-MSMS	A375_MHC_IP_R2	2	630.7410278320312	2	630.340769	1258.66699	-1.1364	-0.00071629	0.63545	0.00040055	-0.5009	-0.00031574	630.3411180459808	54.082	0.66107	54.833	54.609	55.27	0.75105					23	12	3	0	0	0	0.12083	1	20404	20404		75.571	42.785	1	5892700			45932	1631	33454	33724	44878	44878					0.04799873454794579
RVLSDLDQKW	10	Unmodified	_RVLSDLDQKW_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	MULTI-MSMS	A375_MHC_IP_R2	2	420.96270751953125	3	420.562938	1258.66699	-0.42659	-0.00017941	-0.025584	-1.076E-05	-0.45217	-0.00019017	420.5629236231859	54.089	0.56014	54.84	54.609	55.169	0.75105					23	10	3	0	0	0	0.011719	1	20405	20405		112.95	91.147	1	9207200			45933	1631	33454	33724	44879	44879					0.04799873454794579
RVLTITLPAIA	11	Unmodified	_RVLTITLPAIA_					0	0	0			REV__nc|ENSG00000120251|P42262-4|GRIA2;REV__ENSG00000152578|ENST00000282499|GRIA4	REV__nc|ENSG00000120251|P42262-4|GRIA2	MSMS	A375_MHC_IP_R2	2	584.7557983398438	2	584.376623	1166.73869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.13	1	144.16	143.66	144.66	0.024414								0	0	0	0.16331	1	56309	56309		1.4819	0	1		+		45934	18116;19807	33455	33725	44880	44880					0.16199412879313968
RVMDFFRRI	9	Unmodified	_RVMDFFRRI_					0	0	0		nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;ENST00000497964.1_1_1:39924789-39929409:+|nuORF;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000151914|Q03001|DST;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	A375_MHC_IP_R1	1	414.2972106933594	3	413.897487	1238.67063	0.52852	0.00021875	-0.52511	-0.00021734	0.0034062	1.4098E-06	413.89714954723587	71.802	0.50385	71.802	71.615	72.119	0					14	9	2	0	0	0	0.59859	1	26135	26135		14.957	0.73899	1	1900300			45935	4099;14587;5934;14586	33456	33726	44881	44881					0.060842647476874845
RVMDFFRRI	9	Unmodified	_RVMDFFRRI_					0	0	0		nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;ENST00000497964.1_1_1:39924789-39929409:+|nuORF;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000151914|Q03001|DST;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	A375_MHC_IP_R2	2	414.2973327636719	3	413.897487	1238.67063	0.008142	3.37E-06	-0.45317	-0.00018757	-0.44503	-0.0001842	413.89730935197537	70.643	0.45594	71.377	71.149	71.605	0.73421					13	8	2	0	0	0	0.6421	1	26808	26808		12.175	2.4105	1	3785000			45936	4099;14587;5934;14586	33456	33726	44882	44882					0.060842647476874845
RVMELFFTV	9	Unmodified	_RVMELFFTV_					0	0	0		ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MSMS	A375_MHC_IP_R1	1	570.8535766601562	2	571.307352	1140.60015	-0.74101	-0.00042335	0.43842	0.00025047	-0.30259	-0.00017287	571.3075456128527	122.17	0.30467	122.17	121.97	122.28	0					7	5	2	0	0	0	0.14858	1	45441	45441		41.956	11.319	1	8346400			45937	4468	33457	33727	44883	44883					0.03547546639333632
RVMKSIKKCL	10	Unmodified	_RVMKSIKKCL_					0	0	0			REV__chr15:92630345-92678130|350|31.85|0.19|7.41|-|0|TE_info:MSTC,MSTC_dup2701,ERVL-MaLR,LTR,donor,-,92678130,92678466|FAM174B,None|9	REV__chr15:92630345-92678130|350|31.85|0.19|7.41|-|0|TE_info:MSTC,MSTC_dup2701,ERVL-MaLR,LTR,donor,-,92678130,92678466|FAM174B,None|9	MULTI-MSMS	A375_MHC_IP_R2	2	1206.1231689453125	1	1205.72208	1204.7148	0.38984	0.00047003	0.16346	0.00019708	0.55329	0.00066712	1205.7219607715315	149.55	1.6205	149.57	148.32	149.94	0.01825					123	55	3	0	0	0	0.72747	1	57921	57921		0	0	1	407170	+		45938	15717	33458	33728	44884	44884					0.12063532849651892
RVMPSSFFL	9	Unmodified	_RVMPSSFFL_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	A375_MHC_IP_R1	1	542.6864624023438	2	542.28642	1082.55829	-0.5392	-0.0002924	-0.18602	-0.00010088	-0.72522	-0.00039328	542.2864762053341	101.69	0.86156	101.69	101.29	102.15	0					39	16	4	0	0	0	0.054426	1	37338	37338		62.573	20.478	1	10747000			45939	5349	33459	33729	44885	44885					0.02030990950834166
RVMPSSFFL	9	Unmodified	_RVMPSSFFL_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-SECPEP	A375_MHC_IP_R2	2	542.686279296875	2	542.28642	1082.55829	-0.66387	-0.00036001	-0.26488	-0.00014364	-0.92874	-0.00050365	542.2864991595409	100.72	0.77023	101.48	101.13	101.9	0.76278					46	14	4	0	0	0	0.5212	1	38130	38130		32.786	11.039	1	11284000			45940	5349	33459	33729	44886	44886					0.02030990950834166
RVMYSQTLWTG	11	Unmodified	_RVMYSQTLWTG_					0	0	0			REV__ENST00000398958.6_1_1:28864579-28864879:+|nuORF	REV__ENST00000398958.6_1_1:28864579-28864879:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	447.16070556640625	3	447.892179	1340.65471	-0.086096	-3.8562E-05	1.1401	0.00051063	1.054	0.00047207	448.22722088584175	60.031	0.20389	60.031	59.905	60.109	0					5	3	2	0	0	0	0.99625	1	21615	21615		1.2148	0	1	787350	+		45941	24384	33460	33730	44887	44887					-0.001994862798937902
RVNELRDRLW	10	Unmodified	_RVNELRDRLW_					0	0	0		ENST00000481128.1_1_1:223989797-223991008:-|nuORF;nc|ENSG00000143514|Q13625-2|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2	ENST00000481128.1_1_1:223989797-223991008:-|nuORF	ENST00000481128.1_1_1:223989797-223991008:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	453.3213806152344	3	452.921349	1355.74222	0.37703	0.00017077	-0.68722	-0.00031126	-0.31019	-0.00014049	452.9210559818852	44.859	0.50729	44.859	44.523	45.03	0					19	9	3	0	0	0	0.79907	1	15676	15676		30.354	20.039	1	2729300			45942	5403	33461	33731	44888	44888					0.07857475705895922
RVNELRDRLW	10	Unmodified	_RVNELRDRLW_					0	0	0		ENST00000481128.1_1_1:223989797-223991008:-|nuORF;nc|ENSG00000143514|Q13625-2|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2	ENST00000481128.1_1_1:223989797-223991008:-|nuORF	ENST00000481128.1_1_1:223989797-223991008:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	453.3212585449219	3	452.921349	1355.74222	-0.039304	-1.7802E-05	-0.43186	-0.0001956	-0.47116	-0.0002134	452.92096006014174	43.849	0.45366	44.619	44.43	44.883	0.7691					19	8	3	0	0	0	0.57132	2	16375	16350;16375		23.016	15.979	1	3515100			45943	5403	33461	33731	44889;44890	44890					0.07857475705895922
RVNGRLALARW	11	Unmodified	_RVNGRLALARW_					0	0	0		ENST00000472289.5_1_12:32655158-32655206:+|nuORF	ENST00000472289.5_1_12:32655158-32655206:+|nuORF	ENST00000472289.5_1_12:32655158-32655206:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	438.3300476074219	3	437.930067	1310.76837	0.071846	3.1464E-05	0.15957	6.9879E-05	0.23141	0.00010134	437.9301125344508	43.12	0.55939	43.12	42.891	43.451	0					26	10	4	0	0	0	0.42205	1	14984	14984		37.251	30.627	1	6692400			45944	12370	33462	33732	44891	44891					0.12541789668011916
RVNGRLALARW	11	Unmodified	_RVNGRLALARW_					0	0	0		ENST00000472289.5_1_12:32655158-32655206:+|nuORF	ENST00000472289.5_1_12:32655158-32655206:+|nuORF	ENST00000472289.5_1_12:32655158-32655206:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	438.3299865722656	3	437.930067	1310.76837	-0.24735	-0.00010832	-0.23468	-0.00010278	-0.48203	-0.0002111	437.92996331311195	42.112	0.5626	42.884	42.553	43.116	0.7724					23	10	3	0	0	0	0.34239	1	15624	15624		43.477	35.19	1	9413500			45945	12370	33462	33732	44892	44892					0.12541789668011916
RVNPLVKSF	9	Unmodified	_RVNPLVKSF_					0	0	0		nc|ENSG00000172159|A2A2Y4-4|FRMD3;nc|ENSG00000172159|A2A2Y4-3|FRMD3;nc|ENSG00000172159|A2A2Y4-5|FRMD3;nc|ENSG00000172159|A2A2Y4-2|FRMD3;ENSG00000172159|ENST00000304195|FRMD3	nc|ENSG00000172159|A2A2Y4-4|FRMD3	nc|ENSG00000172159|A2A2Y4-4|FRMD3	MULTI-SECPEP	A375_MHC_IP_R1	1	529.962646484375	2	530.319109	1058.62366	-0.50687	-0.0002688	0.020541	1.0893E-05	-0.48633	-0.00025791	530.3190928499696	42.209	0.70634	42.209	41.932	42.638	0					22	13	2	0	0	0	0.14438	1	14645	14645		55.503	24.866	1	21414000			45946	7681	33463	33733	44893	44893					0.09669728468179528
RVNPLVKSF	9	Unmodified	_RVNPLVKSF_					0	0	0		nc|ENSG00000172159|A2A2Y4-4|FRMD3;nc|ENSG00000172159|A2A2Y4-3|FRMD3;nc|ENSG00000172159|A2A2Y4-5|FRMD3;nc|ENSG00000172159|A2A2Y4-2|FRMD3;ENSG00000172159|ENST00000304195|FRMD3	nc|ENSG00000172159|A2A2Y4-4|FRMD3	nc|ENSG00000172159|A2A2Y4-4|FRMD3	MULTI-SECPEP	A375_MHC_IP_R2	2	530.718505859375	2	530.319109	1058.62366	-0.83392	-0.00044224	-0.19519	-0.00010351	-1.0291	-0.00054576	530.3190013795582	41.247	0.55709	42.022	41.743	42.3	0.77451					19	10	2	0	0	0	0.091861	1	15264	15264		96.367	35.009	1	22562000			45947	7681	33463	33733	44894	44894					0.09669728468179528
RVNVENQVL	9	Unmodified	_RVNVENQVL_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.N3444Tfs*24|1|0.36|ENSG00000164199|chr5:90728837-90728837|A/-|frameshift_variant;nc|ENSG00000164199|Q8WXG9-3|ADGRV1;ENST00000504142.2_2_5:89924394-89949789:+|nuORF;nc|ENSG00000164199|Q8WXG9-4|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MSMS	A375_MHC_IP_R1	1	357.6370849609375	3	357.536612	1069.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.713	1	56.713	56.213	57.213	0								0	0	0	0.15486	1	20323	20323		10.8	0	1				45948	6801	33464	33734	44895	44895					0.05599646220525756
RVNWNMFGAY	10	Unmodified	_RVNWNMFGAY_					0	0	0			REV__ENST00000605201.1_1_14:35591893-35592281:+|nuORF	REV__ENST00000605201.1_1_14:35591893-35592281:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	419.9466857910156	3	419.865964	1256.57606	-0.5246	-0.00022026	1.661	0.00069739	1.1364	0.00047713	419.8664345422071	25.325	0.35769	25.968	25.77	26.128	0.64368					12	6	3	0	0	0	0.94587	1	8503	8503		0.69767	0.07084	1	1810500	+		45949	26533	33465	33735	44896	44896					-0.04196293794302619
RVPADDRL	8	Unmodified	_RVPADDRL_					0	0	0		nc|ENSG00000165272|Q92482-2|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	MULTI-SECPEP	A375_MHC_IP_R1	1	471.6614074707031	2	471.261791	940.509028	-0.28241	-0.00013309	-1.5304	-0.00072122	-1.8128	-0.00085431	471.26115458392917	42.34	0.75907	42.34	42.132	42.891	0					23	14	3	0	0	0	0.93661	1	14684	14684		21.747	21.747	1	4185600			45950	14738	33466	33736	44897	44897					0.03639418986222154
RVPDVQDGV	9	Unmodified	_RVPDVQDGV_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MSMS	A375_MHC_IP_R1	1	492.67913818359375	2	492.759081	983.503609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.894	1	35.894	35.394	36.394	0								0	0	0	0.043167	1	11973	11973		55.503	17.529	1				45951	14788	33467	33737	44898	44898					0.01119695403770038
RVPDVQDGV	9	Unmodified	_RVPDVQDGV_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MSMS	A375_MHC_IP_R2	2	492.6792297363281	2	492.759081	983.503609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.168	1	35.932	35.432	36.432	0.76338								0	0	0	0.076528	1	12736	12736		47.594	9.6204	1				45952	14788	33467	33737	44899	44899					0.01119695403770038
RVPERLLVTVN	11	Unmodified	_RVPERLLVTVN_					0	0	0			REV__nc|ENSG00000125844|Q9P2E9-3|RRBP1	REV__nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MSMS	A375_MHC_IP_R1	1	432.9974670410156	3	432.597983	1294.77212	-0.46397	-0.00020071	-0.65787	-0.00028459	-1.1218	-0.00048531	432.59760490012843	136.64	1.028	136.64	136.46	137.49	0					64	19	4	0	0	0	0.73809	1	52811	52811		0.40827	0	1	34045000	+		45953	18367	33468	33738	44900	44900					0.13652414651232903
RVPERLLVTVN	11	Unmodified	_RVPERLLVTVN_					0	0	0			REV__nc|ENSG00000125844|Q9P2E9-3|RRBP1	REV__nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	432.597983	1294.77212	-0.073768	-3.1912E-05	-0.89662	-0.00038787	-0.97038	-0.00041979	432.597518092107	136.57	1.64	136.68	136.5	138.14	0.11133	0.021063	-0.00013217	NaN	0.40827	77	31	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32644000	+		45954	18367	33468	33738							0.13652414651232903
RVPPPPPIA	9	Unmodified	_RVPPPPPIA_					0	0	0		nc|ENSG00000092199|P07910|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000092199|ENST00000553300|HNRNPC;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000277058|ENST00000617807|HNRNPCL3;HNRNPCL1|p.E212Dfs*7|1|0.23|ENSG00000179172|chr1:12847653-12847654|CC/-|frameshift_variant;nc|ENSG00000092199|P07910-3|HNRNPC;ENST00000571636.1_1_16:11336795-11337332:+|nuORF;ENST00000560385.2_1_15:79528799-79529129:+|nuORF;ENST00000457130.2_1_X:143922603-143922738:+|nuORF;HNRNPCL1|p.A139T|1|0.41|ENSG00000179172|chr1:12847875-12847875|C/T|missense_variant	nc|ENSG00000092199|P07910|HNRNPC	nc|ENSG00000092199|P07910|HNRNPC	MULTI-MSMS	A375_MHC_IP_R1	1	472.6894836425781	2	472.28982	942.565087	-0.29588	-0.00013974	0.0084117	3.9728E-06	-0.28746	-0.00013577	472.28977714511103	42.479	4.9798	42.479	41.215	46.195	0					261	97	4	0	0	0	0.03063	2	15535	15382;15535		74.423	26.077	1	23245000			45955	1998	33469	33739	44901;44902	44902					0.09150671893689832
RVPPPPPIA	9	Unmodified	_RVPPPPPIA_					0	0	0		nc|ENSG00000092199|P07910|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000092199|ENST00000553300|HNRNPC;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000277058|ENST00000617807|HNRNPCL3;HNRNPCL1|p.E212Dfs*7|1|0.23|ENSG00000179172|chr1:12847653-12847654|CC/-|frameshift_variant;nc|ENSG00000092199|P07910-3|HNRNPC;ENST00000571636.1_1_16:11336795-11337332:+|nuORF;ENST00000560385.2_1_15:79528799-79529129:+|nuORF;ENST00000457130.2_1_X:143922603-143922738:+|nuORF;HNRNPCL1|p.A139T|1|0.41|ENSG00000179172|chr1:12847875-12847875|C/T|missense_variant	nc|ENSG00000092199|P07910|HNRNPC	nc|ENSG00000092199|P07910|HNRNPC	MULTI-MSMS	A375_MHC_IP_R2	2	472.689453125	2	472.28982	942.565087	-0.56967	-0.00026905	-0.069719	-3.2927E-05	-0.63938	-0.00030198	472.2897594493887	42.112	4.773	42.884	41.232	46.005	0.7724					229	93	3	0	0	0	0.018481	1	15820	15820		85.357	27.885	1	30942000			45956	1998	33469	33739	44903	44903					0.09150671893689832
RVPPPPQSV	9	Unmodified	_RVPPPPQSV_					0	0	0		nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1;nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1;nc|ENSG00000160691|P29353-5|SHC1	nc|ENSG00000160691|P29353-3|SHC1	nc|ENSG00000160691|P29353-3|SHC1	MULTI-MSMS	A375_MHC_IP_R1	1	489.150390625	2	488.782359	975.550165	-0.38525	-0.0001883	-0.12077	-5.9032E-05	-0.50603	-0.00024734	488.7822685337096	28.181	2.1242	28.181	27.482	29.607	0					150	41	4	0	0	0	0.0014143	3	8619	8415;8619;8675		160.52	46.56	1	162730000			45957	6433	33470	33740	44904;44905;44906	44905					0.06141180025713311
RVPPPPQSV	9	Unmodified	_RVPPPPQSV_					0	0	0		nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1;nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1;nc|ENSG00000160691|P29353-5|SHC1	nc|ENSG00000160691|P29353-3|SHC1	nc|ENSG00000160691|P29353-3|SHC1	MULTI-MSMS	A375_MHC_IP_R2	2	489.1820373535156	2	488.782359	975.550165	-0.63438	-0.00031007	0.002348	1.1476E-06	-0.63203	-0.00030893	488.7823251445649	27.562	3.741	28.241	27.536	31.277	0.67857					182	73	5	0	0	0	0.0054362	3	9202	9202;9451;9962		176.84	54.658	1	176600000			45958	6433	33470	33740	44907;44908;44909	44907					0.06141180025713311
RVQAQLNPE	9	Unmodified	_RVQAQLNPE_					0	0	0			REV__ENST00000531497.1_1_11:1009067-1009919:+|nuORF	REV__ENST00000531497.1_1_11:1009067-1009919:+|nuORF	MSMS	A375_MHC_IP_R1	1	527.6832275390625	2	527.78563	1053.55671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.35	1	141.35	140.85	141.85	0								0	0	0	0.1535	1	54257	54257		15.847	0	1		+		45959	25852	33471	33741	44910	44910					0.03207073186422349
RVQEAIAEV	9	Unmodified	_RVQEAIAEV_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-MSMS	A375_MHC_IP_R1	1	507.708251953125	2	507.782556	1013.55056	-0.042161	-2.1409E-05	-0.51857	-0.00026332	-0.56073	-0.00028473	507.7823478974997	38.986	0.81386	38.986	38.475	39.289	0					37	15	3	0	0	0	0.018261	1	13290	13290		85.642	10.713	1	16322000			45960	3637	33472	33742	44911	44911					0.044325549548943854
RVQEQDLRQW	10	Unmodified	_RVQEQDLRQW_					0	0	0		ENSG00000131778|ENST00000369258|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L;ENST00000492728.1_1_1:146714404-146731617:+|nuORF	ENSG00000131778|ENST00000369258|CHD1L	ENSG00000131778|ENST00000369258|CHD1L	MULTI-MSMS	A375_MHC_IP_R2	2	453.63690185546875	3	453.237225	1356.68985	-0.5945	-0.00026945	-0.25426	-0.00011524	-0.84876	-0.00038469	453.2369453568087	34.2	0.45779	34.952	34.702	35.16	0.75225					13	8	2	0	0	0	0.0079374	1	12336	12336		74.306	53.435	1	6390900			45961	4350	33473	33743	44912	44912					0.025768925722786662
RVQFQKSY	8	Unmodified	_RVQFQKSY_					0	0	0		nc|ENSG00000035499|Q8WUY9-2|DEPDC1B;ENST00000512078.5_1_5:59893582-59984814:-|nuORF	nc|ENSG00000035499|Q8WUY9-2|DEPDC1B	nc|ENSG00000035499|Q8WUY9-2|DEPDC1B	MULTI-MSMS	A375_MHC_IP_R1	1	528.718994140625	2	528.285266	1054.55598	-0.99582	-0.00052608	0.37885	0.00020014	-0.61697	-0.00032593	528.2854518165632	29.379	0.55943	29.379	28.996	29.555	0					24	10	4	0	0	0	0.7338	1	9248	9248		24.674	1.5255	1	64511000			45962	14461	33474	33744	44913	44913					0.0308827853737057
RVQGFQVEY	9	Unmodified	_RVQGFQVEY_					0	0	0		nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1	nc|ENSG00000124214|O95793-2|STAU1	nc|ENSG00000124214|O95793-2|STAU1	MULTI-MSMS	A375_MHC_IP_R2	2	563.6876831054688	2	563.288005	1124.56146	-0.69753	-0.00039291	-2.2784	-0.0012834	-2.9759	-0.0016763	563.2881257455197	54.757	0.91516	55.508	55.018	55.933	0.75075					51	17	5	0	0	0	0.0090323	1	20646	20646		99.799	63.672	1	32589000			45963	3885	33475	33745	44914	44914					0.004159573291872221
RVQPDQGKIF	10	Unmodified	_RVQPDQGKIF_					0	0	0		ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	MULTI-MSMS	A375_MHC_IP_R1	1	396.9556579589844	3	396.555895	1186.64586	-0.33128	-0.00013137	0.073538	2.9162E-05	-0.25774	-0.00010221	396.5559707730708	32.592	0.60503	32.592	32.333	32.938	0					32	11	4	0	0	0	0.58757	1	10518	10518		21.799	3.4264	1	19994000			45964	4798	33476	33746	44915	44915					0.059999081459409354
RVQPDQGKIF	10	Unmodified	_RVQPDQGKIF_					0	0	0		ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	MULTI-SECPEP	A375_MHC_IP_R1	1	594.7301635742188	2	594.330205	1186.64586	-0.6207	-0.0003689	0.27155	0.00016139	-0.34915	-0.00020751	594.3303336992169	32.59	0.40229	32.59	32.383	32.785	0					24	7	4	0	0	0	0.51493	1	10533	10533		45.7	11.298	1	15965000			45965	4798	33476	33746	44916	44916					0.059999081459409354
RVQPDQGKIF	10	Unmodified	_RVQPDQGKIF_					0	0	0		ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	MULTI-SECPEP	A375_MHC_IP_R2	2	594.730224609375	2	594.330205	1186.64586	-0.58009	-0.00034477	0.44043	0.00026176	-0.13967	-8.3008E-05	594.3303649160724	31.774	0.55719	32.511	32.3	32.857	0.73691					25	10	4	0	0	0	0.42334	1	11250	11250		51.63	9.7902	1	15339000			45966	4798	33476	33746	44917	44917					0.059999081459409354
RVQPDQGKIF	10	Unmodified	_RVQPDQGKIF_					0	0	0		ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	396.555895	1186.64586	-0.33128	-0.00013137	0.073538	2.9162E-05	-0.25774	-0.00010221	396.5559707730708	32.592	0.60503	32.592	32.333	32.938	0	0.039146	7.4619E-05	NaN	21.799	32	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19994000			45967	4798	33476	33746							0.059999081459409354
RVQPDQGKIF	10	Unmodified	_RVQPDQGKIF_					0	0	0		ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	396.555895	1186.64586	-0.12826	-5.0864E-05	-0.019665	-7.7983E-06	-0.14793	-5.8662E-05	396.5559075509118	31.777	0.71054	32.514	32.249	32.96	0.73691	-0.039146	-3.6261E-05	NaN	21.799	33	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18050000			45968	4798	33476	33746							0.059999081459409354
RVRDINEAF	9	Unmodified	_RVRDINEAF_					0	0	0		ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-5|TCF4;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000140262|Q99081-4|TCF12;ENST00000592395.5_1_19:1612394-1615452:-|nuORF;nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3	ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000071564|P15923-2|TCF3	ENSG00000140262|ENST00000333725|TCF12	MULTI-MSMS	A375_MHC_IP_R1	1	374.5859069824219	3	373.868362	1118.58326	0.39238	0.0001467	-0.21688	-8.1084E-05	0.1755	6.5615E-05	373.8683146311936	33.623	0.40443	33.623	33.393	33.798	0					22	7	4	0	0	0	0.53943	1	11027	11027		17.863	6.9642	1	14433000			45969	5131;14480	33477	33747	44918	44918					0.028707620777595366
RVRDINEAF	9	Unmodified	_RVRDINEAF_					0	0	0		ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-5|TCF4;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000140262|Q99081-4|TCF12;ENST00000592395.5_1_19:1612394-1615452:-|nuORF;nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3	ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000071564|P15923-2|TCF3	ENSG00000140262|ENST00000333725|TCF12	MULTI-SECPEP	A375_MHC_IP_R1	1	560.6986083984375	2	560.298904	1118.58326	-0.42347	-0.00023727	-0.021645	-1.2128E-05	-0.44511	-0.0002494	560.298981519188	33.616	0.40443	33.616	33.393	33.798	0					23	7	4	0	0	0	0.53098	1	10983	10983		33.445	12.991	1	17007000			45970	5131;14480	33477	33747	44919	44919					0.028707620777595366
RVRDINEAF	9	Unmodified	_RVRDINEAF_					0	0	0		ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-5|TCF4;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000140262|Q99081-4|TCF12;ENST00000592395.5_1_19:1612394-1615452:-|nuORF;nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3	ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000071564|P15923-2|TCF3	ENSG00000140262|ENST00000333725|TCF12	MULTI-MSMS	A375_MHC_IP_R2	2	374.2680358886719	3	373.868362	1118.58326	0.30355	0.00011349	-0.22446	-8.392E-05	0.079081	2.9566E-05	373.8682486709902	32.807	0.50791	33.544	33.265	33.773	0.73692					27	9	5	0	0	0	0.21241	1	11695	11695		37.075	4.289	1	14431000			45971	5131;14480	33477	33747	44920	44920					0.028707620777595366
RVRDINEAF	9	Unmodified	_RVRDINEAF_					0	0	0		ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-5|TCF4;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000140262|Q99081-4|TCF12;ENST00000592395.5_1_19:1612394-1615452:-|nuORF;nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3	ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000071564|P15923-2|TCF3	ENSG00000140262|ENST00000333725|TCF12	MULTI-SECPEP	A375_MHC_IP_R2	2	560.6981201171875	2	560.298904	1118.58326	-0.70871	-0.00039709	0.015144	8.485E-06	-0.69357	-0.0003886	560.2988669984788	32.807	0.45662	33.544	33.317	33.773	0.73692					23	8	4	0	0	0	0.27742	1	11693	11693		51.63	23.143	1	16949000			45972	5131;14480	33477	33747	44921	44921					0.028707620777595366
RVRDPVTTW	9	Unmodified	_RVRDPVTTW_					0	0	0		ENST00000548977.5_1_12:52435710-52448188:+|nuORF;ENST00000549102.1_1_12:52437623-52448188:+|nuORF;ENST00000394825.5_1_12:52445232-52448188:+|nuORF;ENST00000243050.5_1_12:52445232-52448188:+|nuORF	ENST00000548977.5_1_12:52435710-52448188:+|nuORF	ENST00000548977.5_1_12:52435710-52448188:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	565.708740234375	2	565.309272	1128.60399	-0.66348	-0.00037507	-0.016205	-9.1607E-06	-0.67969	-0.00038423	565.3092361418803	37.686	0.6671	38.46	38.124	38.791	0.77451					20	12	3	0	0	0	0.63622	1	13800	13800		24.991	13.351	1	5577900			45973	10171	33478	33748	44922	44922					0.04483352457418732
RVRDVVWDEQ	10	Unmodified	_RVRDVVWDEQ_					0	0	0		ENSG00000185477|ENST00000609438|GPRIN3	ENSG00000185477|ENST00000609438|GPRIN3	ENSG00000185477|ENST00000609438|GPRIN3	MULTI-MSMS	A375_MHC_IP_R2	2	434.65576171875	3	434.558076	1300.6524	-0.71658	-0.0003114	-1.0536	-0.00045784	-1.7702	-0.00076924	434.55778822196123	25.769	0.50887	26.429	26.245	26.754	0.65992					17	9	3	0	0	0	0.7154	1	8625	8625		5.4027	0.35519	1	3846700			45974	8668	33479	33749	44923	44923					0.014098013066586645
RVRESLRIW	9	Unmodified	_RVRESLRIW_					0	0	0		ENSG00000168040|ENST00000301838|FADD	ENSG00000168040|ENST00000301838|FADD	ENSG00000168040|ENST00000301838|FADD	MULTI-MSMS	A375_MHC_IP_R1	1	405.9754333496094	3	405.575401	1213.70437	-0.37282	-0.00015121	2.4131	0.00097869	2.0403	0.00082748	405.57559914118417	43.949	0.86441	43.949	43.3	44.165	0					28	16	3	0	0	0	0.39657	1	15315	15315		24.882	2.2235	1	2959300			45975	7258	33480	33750	44924	44924					0.106070095110681
RVRESLRIW	9	Unmodified	_RVRESLRIW_					0	0	0		ENSG00000168040|ENST00000301838|FADD	ENSG00000168040|ENST00000301838|FADD	ENSG00000168040|ENST00000301838|FADD	MULTI-MSMS	A375_MHC_IP_R2	2	405.9753112792969	3	405.575401	1213.70437	0.08913	3.6149E-05	0.8938	0.00036251	0.98293	0.00039865	405.5753128356113	42.849	0.60816	43.622	43.218	43.826	0.7724					26	11	3	0	0	0	0.6629	1	15954	15954		10.315	0.77126	1	2574700			45976	7258	33480	33750	44925	44925					0.106070095110681
RVRFFPYNY	9	Unmodified	_RVRFFPYNY_					0	0	0		nc|ENSG00000120509|Q5EBL8-2|PDZD11;ENSG00000120509|ENST00000239666|PDZD11	nc|ENSG00000120509|Q5EBL8-2|PDZD11	nc|ENSG00000120509|Q5EBL8-2|PDZD11	MULTI-MSMS	A375_MHC_IP_R1	1	421.62054443359375	3	421.220735	1260.64038	0.24063	0.00010136	-1.5568	-0.00065575	-1.3161	-0.00055439	421.21969000065343	70.293	0.5603	70.293	69.882	70.442	0					16	10	2	0	0	0	0.60982	1	25542	25542		14.405	7.3037	1	1047300			45977	14567	33481	33751	44926	44926					0.020482293541363106
RVRFFPYNY	9	Unmodified	_RVRFFPYNY_					0	0	0		nc|ENSG00000120509|Q5EBL8-2|PDZD11;ENSG00000120509|ENST00000239666|PDZD11	nc|ENSG00000120509|Q5EBL8-2|PDZD11	nc|ENSG00000120509|Q5EBL8-2|PDZD11	MULTI-MATCH	A375_MHC_IP_R2	2		3	421.220735	1260.64038	-0.010792	-4.5459E-06	-1.3284	-0.00055954	-1.3392	-0.00056409	421.2200798749227	69.392	0.4552	70.126	69.879	70.335	0.73421	-0.083647	0.00011731	NaN	14.405	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1681700			45978	14567	33481	33751							0.020482293541363106
RVRFIHIT	8	Unmodified	_RVRFIHIT_					0	0	0			REV__ENSG00000169871|ENST00000306085|TRIM56	REV__ENSG00000169871|ENST00000306085|TRIM56	MULTI-SECPEP	A375_MHC_IP_R2	2	521.0660400390625	2	521.319443	1040.62433	-0.70482	-0.00036744	-2.8435	-0.0014824	-3.5484	-0.0018498	521.3176376995159	81.421	0.35248	82.164	82.029	82.381	0.74293					8	6	2	0	0	0	0.972	1	30953	30953		13.508	12.714	1	1490700	+		45979	20947	33482	33752	44927	44927					0.10564567907886158
RVRKMIKRLHL	11	Unmodified	_RVRKMIKRLHL_					0	0	0		ENST00000427566.2_1_1:248100136-248100640:-|nuORF	ENST00000427566.2_1_1:248100136-248100640:-|nuORF	ENST00000427566.2_1_1:248100136-248100640:-|nuORF	MSMS	A375_MHC_IP_R2	2	725.86767578125	2	725.46919	1448.92383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.33	1	144.36	143.86	144.86	0.024414								0	0	0	0.1636	1	56382	56382		0	0	1				45980	11823	33483	33753	44928	44928					0.21732117197961998
RVRLEDRFN	9	Unmodified	_RVRLEDRFN_					0	0	0		nc|ENSG00000101190|Q9UL49-1|TCFL5;ENSG00000101190|ENST00000335351|TCFL5	nc|ENSG00000101190|Q9UL49-1|TCFL5	nc|ENSG00000101190|Q9UL49-1|TCFL5	MULTI-SECPEP	A375_MHC_IP_R1	1	402.6224670410156	3	402.223028	1203.64725	-0.047917	-1.9273E-05	3.2477	0.0013063	3.1998	0.001287	402.22294215574357	22.016	0.40744	22.016	21.808	22.216	0					31	7	5	0	0	0	0.74169	1	5847	5847		11.518	4.0408	1	8514400			45981	2267	33484	33754	44929	44929					0.053575422347194035
RVRPGWRNVL	10	Unmodified	_RVRPGWRNVL_					0	0	0		ENST00000446336.1_1_22:27113356-27122618:+|nuORF	ENST00000446336.1_1_22:27113356-27122618:+|nuORF	ENST00000446336.1_1_22:27113356-27122618:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	418.6506652832031	3	418.251029	1251.73126	-0.3331	-0.00013932	-0.84756	-0.00035449	-1.1807	-0.00049381	418.25065537078143	23.627	0.25419	24.257	24.18	24.435	0.63014					6	4	2	0	0	0	0.93578	1	7679	7679		5.7834	0	1	2007300			45982	12033	33485	33755	44930	44930					0.11546118122282678
RVRQRRHARLP	11	Unmodified	_RVRQRRHARLP_					0	0	0			REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	482.69891357421875	3	482.299265	1443.87596	-0.67184	-0.00032403	0.29472	0.00014214	-0.37711	-0.00018188	482.2992506115231	138.03	1.3223	138.03	137.79	139.12	0					61	25	3	0	0	0	0.73886	1	53092	53092		0.45452	0	1	18933000	+		45983	23571	33486	33756	44931	44931					0.17178179322127107
RVRQRRHARLP	11	Unmodified	_RVRQRRHARLP_					0	0	0			REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	482.23553466796875	3	482.299265	1443.87596	-0.67184	-0.00032403	0.29472	0.00014214	-0.37711	-0.00018188	482.2992506115231	138.03	1.3223	138.03	137.79	139.12	0					61	25	3	0	0	0	1.0015	1	53207	53207		0.094841	0	1	18933000	+		45984	23571	33486	33756	44932	44932					0.17178179322127107
RVRQRRHARLP	11	Unmodified	_RVRQRRHARLP_					0	0	0			REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	482.698974609375	3	482.299265	1443.87596	-0.38743	-0.00018686	0.058262	2.81E-05	-0.32917	-0.00015876	482.29912380499184	137.98	1.8154	138.06	137.81	139.62	0.083969					75	35	5	0	0	0	0.73886	1	54121	54121		0.45452	0	1	15676000	+		45985	23571	33486	33756	44933	44933					0.17178179322127107
RVRRELWAY	9	Unmodified	_RVRRELWAY_					0	0	0		ENSG00000116984|ENST00000366577|MTR;nc|ENSG00000116984|Q99707-2|MTR;ENST00000470570.1_1_1:237058450-237060941:+|nuORF	ENSG00000116984|ENST00000366577|MTR	ENSG00000116984|ENST00000366577|MTR	MULTI-MSMS	A375_MHC_IP_R1	1	417.303466796875	3	416.903518	1247.68872	-0.087589	-3.6516E-05	0.047402	1.9762E-05	-0.040187	-1.6754E-05	416.9035540830421	38.093	0.45867	38.093	37.913	38.371	0					12	8	2	0	0	0	0.2415	1	12924	12924		34.932	19.975	1	3244400			45986	3448	33487	33757	44934	44934					0.07478722994051168
RVRSSALFW	9	Unmodified	_RVRSSALFW_					0	0	0		ENST00000221859.8_1_19:36605839-36605938:-|nuORF	ENST00000221859.8_1_19:36605839-36605938:-|nuORF	ENST00000221859.8_1_19:36605839-36605938:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	374.94586181640625	3	374.545331	1120.61416	0.34763	0.0001302	0.75484	0.00028272	1.1025	0.00041292	374.5455783656769	60.073	0.40721	60.073	59.854	60.261	0					20	7	3	0	0	0	0.55471	1	21633	21633		12.175	0	1	4310300			45987	10110	33488	33758	44935	44935					0.05867960182672505
RVRSSALFW	9	Unmodified	_RVRSSALFW_					0	0	0		ENST00000221859.8_1_19:36605839-36605938:-|nuORF	ENST00000221859.8_1_19:36605839-36605938:-|nuORF	ENST00000221859.8_1_19:36605839-36605938:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	374.61669921875	3	374.545331	1120.61416	-0.046553	-1.7436E-05	-0.21381	-8.0083E-05	-0.26037	-9.7519E-05	374.54520454246534	58.896	0.66014	59.643	59.387	60.047	0.74714					27	12	4	0	0	0	0.65527	1	22298	22298		16.566	8.6557	1	3120100			45988	10110	33488	33758	44936	44936					0.05867960182672505
RVRTCDRPL	9	Unmodified	_RVRTCDRPL_					0	0	0			REV__nc|ENSG00000103174|Q9UK23-3|NAGPA	REV__nc|ENSG00000103174|Q9UK23-3|NAGPA	MULTI-MSMS	A375_MHC_IP_R1	1	372.9418640136719	3	372.541592	1114.60295	0.34405	0.00012817	-0.09752	-3.633E-05	0.24653	9.1841E-05	372.5415545598115	60.066	0.30526	60.066	59.905	60.21	0					11	5	3	0	0	0	0.75494	1	21656	21656		2.086	0	1	1092400	+		45989	17256	33489	33759	44937	44937					0.05022814816857135
RVRWGKERWRW	11	Unmodified	_RVRWGKERWRW_					0	0	0			REV__ENST00000412084.1_1_12:10095162-10095989:-|nuORF	REV__ENST00000412084.1_1_12:10095162-10095989:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	539.3671875	3	538.967404	1613.88038	-0.63914	-0.00034448	0.12788	6.8922E-05	-0.51127	-0.00027556	538.9675301889274	77.573	0.6101	77.573	77.336	77.946	0					38	11	5	0	0	0	0.99252	1	28282	28282		5.5233	4.4135	1	17857000	+		45990	24488	33490	33760	44938	44938					0.09799643745009234
RVRWGKERWRW	11	Unmodified	_RVRWGKERWRW_					0	0	0			REV__ENST00000412084.1_1_12:10095162-10095989:-|nuORF	REV__ENST00000412084.1_1_12:10095162-10095989:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	539.3676147460938	3	538.967404	1613.88038	-0.85437	-0.00046048	0.29188	0.00015731	-0.56249	-0.00030316	538.9677629388171	76.786	0.80943	77.527	77.146	77.956	0.74052					45	15	5	0	0	0	0.73698	2	29138	29138;29191		2.2527	2.1579	1	18382000	+		45991	24488	33490	33760	44939;44940	44939					0.09799643745009234
RVRWGKERWRW	11	Unmodified	_RVRWGKERWRW_					0	0	0			REV__ENST00000412084.1_1_12:10095162-10095989:-|nuORF	REV__ENST00000412084.1_1_12:10095162-10095989:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	808.3465576171875	2	807.947467	1613.88038	-0.88096	-0.00071177	0.4564	0.00036875	-0.42456	-0.00034302	807.947696201258	76.786	0.35352	77.527	77.352	77.705	0.74052					9	6	2	0	0	0	0.73891	1	29189	29189		0.26902	0	1	2468900	+		45992	24488	33490	33760	44941	44941					0.09799643745009234
RVRWGKERWRW	11	Unmodified	_RVRWGKERWRW_					0	0	0			REV__ENST00000412084.1_1_12:10095162-10095989:-|nuORF	REV__ENST00000412084.1_1_12:10095162-10095989:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	538.6401977539062	3	538.967404	1613.88038	-0.85437	-0.00046048	0.29188	0.00015731	-0.56249	-0.00030316	538.9677629388171	76.786	0.80943	77.527	77.146	77.956	0.74052					45	15	5	0	0	0	1.0012	1	29231	29231		0.36667	0.27183	1	18382000	+		45993	24488	33490	33760	44942	44942					0.09799643745009234
RVSALCTLAK	10	Unmodified	_RVSALCTLAK_					0	0	0			REV__ENSG00000198551|ENST00000361113|ZNF627	REV__ENSG00000198551|ENST00000361113|ZNF627	MULTI-MSMS	A375_MHC_IP_R1	1	531.2088623046875	2	531.310426	1060.6063	-0.40724	-0.00021637	-0.040546	-2.1542E-05	-0.44778	-0.00023791	531.3102250010757	127.96	0.70667	127.96	127.87	128.58	0					16	13	2	0	0	0	0.70793	1	49159	49159		8.7454	0.15213	1	17964000	+		45994	22380	33491	33761	44943	44943					0.0784206487087431
RVSDINFTL	9	Unmodified	_RVSDINFTL_					0	0	0		nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3	nc|ENSG00000110075|Q5H9R7-3|PPP6R3	nc|ENSG00000110075|Q5H9R7-3|PPP6R3	MULTI-SECPEP	A375_MHC_IP_R2	2	532.4620361328125	2	532.790381	1063.56621	-0.75739	-0.00040353	0.30554	0.00016279	-0.45185	-0.00024074	532.7904184634917	80.497	1.4215	81.242	80.81	82.231	0.74473					88	27	5	0	0	0	0.046478	1	30577	30577		72.968	16.791	1	80641000			45995	2918	33492	33762	44944	44944					0.036968414719467546
RVSEWDSVE	9	Unmodified	_RVSEWDSVE_					0	0	0		nc|ENSG00000104728|O15013-7|ARHGEF10;nc|ENSG00000104728|O15013-4|ARHGEF10;ENSG00000104728|ENST00000349830|ARHGEF10;nc|ENSG00000104728|O15013-6|ARHGEF10;nc|ENSG00000104728|O15013|ARHGEF10;ENST00000523711.5_1_8:1824717-1874701:+|nuORF	nc|ENSG00000104728|O15013-7|ARHGEF10;ENST00000523711.5_1_8:1824717-1874701:+|nuORF	ENST00000523711.5_1_8:1824717-1874701:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	554.186279296875	2	553.759278	1105.504	-0.81169	-0.00044948	1.4746	0.00081656	0.66289	0.00036708	553.7596395218669	30.278	0.50732	30.996	30.809	31.317	0.71857					19	9	3	0	0	0	0.74412	1	10713	10713		10.074	0	1	2743000			45996	2530;13047	33493	33763	44945	44945					-0.04452929667036187
RVSEYVPEI	9	Unmodified	_RVSEYVPEI_					0	0	0		ENST00000531387.5_1_11:3022346-3069017:-|nuORF;nc|ENSG00000110619|P49589-2|CARS1;nc|ENSG00000110619|P49589|CARS1;ENSG00000110619|ENST00000380525|CARS1;ENST00000526890.5_1_11:3050224-3063461:-|nuORF	ENST00000531387.5_1_11:3022346-3069017:-|nuORF	ENST00000531387.5_1_11:3022346-3069017:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	546.6897583007812	2	546.290214	1090.56587	-0.89901	-0.00049112	-0.11022	-6.0211E-05	-1.0092	-0.00055133	546.2902199165385	65.35	0.55811	66.088	65.766	66.324	0.73812					26	10	3	0	0	0	0.10622	1	24763	24763		49.554	1.9599	1	4788500			45997	13169	33494	33764	44946	44946					0.02421421752092101
RVTEILDYW	9	Unmodified	_RVTEILDYW_					0	0	0		nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3|COG4	nc|ENSG00000103051|Q9H9E3|COG4	MULTI-SECPEP	A375_MHC_IP_R1	1	598.2113647460938	2	597.811313	1193.60807	-0.36051	-0.00021552	0.58232	0.00034812	0.22181	0.0001326	597.8114914493218	103.22	0.76402	103.22	102.91	103.68	0					40	14	4	0	0	0	0.22619	1	37904	37904		63.961	25.785	1	9022700			45998	2415	33495	33765	44947	44947					0.0190139716048634
RVTEILDYW	9	Unmodified	_RVTEILDYW_					0	0	0		nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3|COG4	nc|ENSG00000103051|Q9H9E3|COG4	MULTI-SECPEP	A375_MHC_IP_R2	2	598.2109375	2	597.811313	1193.60807	-0.54844	-0.00032786	0.23198	0.00013868	-0.31646	-0.00018918	597.8114058814509	102.34	0.91601	103.1	102.87	103.79	0.76428					36	17	3	0	0	0	0.44554	1	38760	38760		43.772	13.136	1	8727000			45999	2415	33495	33765	44948	44948					0.0190139716048634
RVTFVNFTV	9	Unmodified	_RVTFVNFTV_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	A375_MHC_IP_R2	2	542.203125	2	541.803291	1081.59203	-0.75815	-0.00041077	-2.0881	-0.0011313	-2.8462	-0.0015421	542.3025169794024	92.703	0.50569	93.442	93.24	93.746	0.73902					16	9	2	0	0	0	0.40495	1	35251	35251		55.503	19.459	1	2527300			46000	9114	33496	33766	44949	44949					0.054497357142281544
RVTNKSQIRTW	11	Unmodified	_RVTNKSQIRTW_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	A375_MHC_IP_R1	1	463.99652099609375	3	463.596753	1387.76843	-0.081871	-3.7955E-05	-0.47014	-0.00021796	-0.55201	-0.00025591	463.9308413305081	20.748	0.35963	20.748	20.536	20.895	0					15	6	3	0	0	0	0.36714	1	5393	5393		41.567	33.28	1	1952900			46001	4401	33497	33767	44950	44950					0.09005744877345023
RVTNKSQIRTW	11	Unmodified	_RVTNKSQIRTW_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	A375_MHC_IP_R2	2	463.9964599609375	3	463.596753	1387.76843	-0.84604	-0.00039222	0.2592	0.00012016	-0.58685	-0.00027206	463.5967814778139	19.213	0.45491	19.816	19.633	20.088	0.60308					14	8	2	0	0	0	0.63141	1	5935	5935		20.878	12.591	1	1526100			46002	4401	33497	33767	44951	44951					0.09005744877345023
RVTTIARNW	9	Unmodified	_RVTTIARNW_					0	0	0		ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A;SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant;ENSG00000101310|ENST00000650089|SEC23B	ENSG00000100934|ENST00000307712|SEC23A;SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	559.2167358398438	2	558.817264	1115.61998	-0.74774	-0.00041785	-0.12711	-7.1033E-05	-0.87485	-0.00048888	558.8173185563071	32.602	0.45721	33.339	33.112	33.569	0.73691					18	8	4	0	0	0	0.68927	1	11624	11624		23.79	7.9426	1	12081000			46003	2280;2234	33498	33768	44952	44952					0.06679058694317064
RVVAKAWRSW	10	Unmodified	_RVVAKAWRSW_					0	0	0		ENST00000576761.5_1_17:1456361-1461827:-|nuORF	ENST00000576761.5_1_17:1456361-1461827:-|nuORF	ENST00000576761.5_1_17:1456361-1461827:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	420.6435241699219	3	420.243763	1257.70946	-0.29266	-0.00012299	0.61812	0.00025976	0.32545	0.00013677	420.244050129318	34.667	0.75782	35.43	35.273	36.03	0.76338					24	14	2	0	0	0	0.49952	1	12566	12566		20.411	16.294	1	3924000			46004	13641	33499	33769	44953	44953					0.09091313373687626
RVVDFDETW	9	Unmodified	_RVVDFDETW_					0	0	0		nc|ENSG00000108094|Q13617-2|CUL2;ENSG00000108094|ENST00000374749|CUL2;ENST00000478044.1_1_10:35352986-35363196:-|nuORF	nc|ENSG00000108094|Q13617-2|CUL2	nc|ENSG00000108094|Q13617-2|CUL2	MULTI-MSMS	A375_MHC_IP_R1	1	584.17724609375	2	583.77747	1165.54039	-0.079524	-4.6424E-05	0.45227	0.00026403	0.37275	0.0002176	583.7774494994687	78.95	0.91309	78.95	78.505	79.418	0					32	17	3	0	0	0	0.14858	1	28799	28799		41.956	11.319	1	7865100			46005	2784	33500	33770	44954	44954					-0.03576052770335991
RVVDFDETW	9	Unmodified	_RVVDFDETW_					0	0	0		nc|ENSG00000108094|Q13617-2|CUL2;ENSG00000108094|ENST00000374749|CUL2;ENST00000478044.1_1_10:35352986-35363196:-|nuORF	nc|ENSG00000108094|Q13617-2|CUL2	nc|ENSG00000108094|Q13617-2|CUL2	MULTI-MSMS	A375_MHC_IP_R2	2	584.1773071289062	2	583.77747	1165.54039	-0.40706	-0.00023763	0.36691	0.00021419	-0.040151	-2.3439E-05	583.7772274957866	78.217	0.91525	78.96	78.572	79.487	0.74293					38	17	3	0	0	0	0.2415	1	29687	29687		34.932	16.786	1	7926200			46006	2784	33500	33770	44955	44955					-0.03576052770335991
RVVDIYSKF	9	Unmodified	_RVVDIYSKF_					0	0	0		ENST00000546531.5_1_12:49396684-49399341:-|nuORF;nc|ENSG00000181929|P54619-2|PRKAG1;ENSG00000181929|ENST00000548065|PRKAG1;nc|ENSG00000181929|P54619-3|PRKAG1	ENST00000546531.5_1_12:49396684-49399341:-|nuORF	ENST00000546531.5_1_12:49396684-49399341:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	564.2159423828125	2	563.816399	1125.61824	-0.42675	-0.00024061	0.14572	8.2157E-05	-0.28103	-0.00015845	563.8164272755362	54.849	0.81374	54.849	54.567	55.381	0					41	15	4	0	0	0	0.0089117	1	19566	19566		97.741	32.506	1	25876000			46007	8368	33501	33771	44956	44956					0.060460048857066795
RVVDIYSKF	9	Unmodified	_RVVDIYSKF_					0	0	0		ENST00000546531.5_1_12:49396684-49399341:-|nuORF;nc|ENSG00000181929|P54619-2|PRKAG1;ENSG00000181929|ENST00000548065|PRKAG1;nc|ENSG00000181929|P54619-3|PRKAG1	ENST00000546531.5_1_12:49396684-49399341:-|nuORF	ENST00000546531.5_1_12:49396684-49399341:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	564.2152709960938	2	563.816399	1125.61824	-0.87687	-0.00049439	0.1439	8.1135E-05	-0.73296	-0.00041326	563.8164050976396	53.982	0.76481	54.733	54.404	55.169	0.75105					41	14	4	0	0	0	0.016157	1	20333	20333		88.364	40.615	1	26247000			46008	8368	33501	33771	44957	44957					0.060460048857066795
RVVGVVIAV	9	Unmodified	_RVVGVVIAV_					0	0	0		ENSG00000106537|ENST00000262067|TSPAN13	ENSG00000106537|ENST00000262067|TSPAN13	ENSG00000106537|ENST00000262067|TSPAN13	MULTI-MSMS	A375_MHC_IP_R2	2	456.7049865722656	2	456.30547	910.596387	-0.24879	-0.00011353	0.11746	5.3596E-05	-0.13134	-5.993E-05	456.30543327268543	73.996	0.50724	74.733	74.553	75.06	0.73752					20	9	3	0	0	0	0.32899	1	28110	28110		28.487	0	1	1777200			46009	2696	33502	33772	44958	44958					0.137512449278006
RVVLPGRK	8	Unmodified	_RVVLPGRK_					0	0	0		ENST00000426333.6_1_17:42976750-42976942:-|nuORF	ENST00000426333.6_1_17:42976750-42976942:-|nuORF	ENST00000426333.6_1_17:42976750-42976942:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	925.0095825195312	1	924.610146	923.602869	-0.42543	-0.00039336	0.015465	1.4299E-05	-0.40997	-0.00037906	924.6099417786512	147.63	0.33185	147.63	147.53	147.87	0					76	28	4	0	0	0	0.77861	1	56384	56384		0	0	1	1028600			46010	11803	33503	33773	44959	44959					0.13801182879194585
RVVNLVKRW	9	Unmodified	_RVVNLVKRW_					0	0	0		ENST00000565712.1_1_15:83674416-83680265:-|nuORF	ENST00000565712.1_1_15:83674416-83680265:-|nuORF	ENST00000565712.1_1_15:83674416-83680265:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	390.9805603027344	3	390.580375	1168.7193	-0.8091	-0.00031602	0.84826	0.00033131	0.03916	1.5295E-05	390.5806384964604	37.103	0.50621	37.874	37.665	38.171	0.7709					14	9	3	0	0	0	0.12748	1	13585	13585		45.74	30.001	1	1760300			46011	13549	33504	33774	44960	44960					0.1416850137907204
RVVNLVKRW	9	Unmodified	_RVVNLVKRW_					0	0	0		ENST00000565712.1_1_15:83674416-83680265:-|nuORF	ENST00000565712.1_1_15:83674416-83680265:-|nuORF	ENST00000565712.1_1_15:83674416-83680265:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	390.580375	1168.7193	-0.22045	-8.6102E-05	0.46979	0.00018349	0.24935	9.739E-05	390.5806835962577	38.254	0.45899	38.254	38.067	38.526	0	0.19005	-0.00024146	NaN	45.74	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2380800			46012	13549	33504	33774							0.1416850137907204
RVVPVLLLL	9	Unmodified	_RVVPVLLLL_					0	0	0			REV__ENST00000421092.1_1_20:58517212-58517281:+|nuORF	REV__ENST00000421092.1_1_20:58517212-58517281:+|nuORF	MSMS	A375_MHC_IP_R2	2	511.3817443847656	2	511.360245	1020.70594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.46	1	148.48	147.98	148.98	0.018707								0	0	0	0.15486	1	57658	57658		0	0	1		+		46013	24585	33505	33775	44961	44961					0.1964125054713577
RVVPVLLLL	9	Unmodified	_RVVPVLLLL_					0	0	0			REV__ENST00000421092.1_1_20:58517212-58517281:+|nuORF	REV__ENST00000421092.1_1_20:58517212-58517281:+|nuORF	MSMS	A375_MHC_IP_R2	2	511.3817138671875	2	511.360245	1020.70594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.04	1	149.06	148.56	149.56	0.018707								0	0	0	0.15486	1	57861	57861		0	0	1		+		46014	24585	33505	33775	44962	44962					0.1964125054713577
RVVYPLEKL	9	Unmodified	_RVVYPLEKL_					0	0	0		ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1	ENSG00000130826|ENST00000369550|DKC1	ENSG00000130826|ENST00000369550|DKC1	MULTI-SECPEP	A375_MHC_IP_R1	1	373.2976989746094	3	372.89737	1115.67028	0.38236	0.00014258	-0.15506	-5.7823E-05	0.2273	8.4759E-05	372.8973662846704	63.402	0.61504	63.402	63.069	63.684	0					27	11	3	0	0	0	0.80101	1	22885	22885		1.0715	0	1	6360900			46015	4287	33506	33776	44963	44963					0.1170716829947196
RVWDIVRHY	9	Unmodified	_RVWDIVRHY_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	A375_MHC_IP_R2	2	415.6278381347656	3	415.228001	1242.66217	-0.18667	-7.7509E-05	-1.8788	-0.00078015	-2.0655	-0.00085766	415.2264017930112	50.384	0.81372	51.138	50.497	51.311	0.75406					22	15	3	0	0	0	0.17375	1	18962	18962		39.923	27.05	1	2885600			46016	8524	33507	33777	44964	44964					0.050550341027019385
RVWKQKSS	8	Unmodified	_RVWKQKSS_					0	0	0		nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4	nc|ENSG00000128815|Q6ZS81-5|WDFY4	nc|ENSG00000128815|Q6ZS81-5|WDFY4	MSMS	A375_MHC_IP_R2	2	509.717529296875	2	509.793258	1017.57196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.87	1	141.9	141.4	142.4	0.030731								0	0	0	0.16876	1	55475	55475		2.3027	0.24298	1				46017	4164	33508	33778	44965	44965					0.06387984774278266
RVWQWDEKW	9	Unmodified	_RVWQWDEKW_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-SECPEP	A375_MHC_IP_R1	1	445.2872314453125	3	444.887645	1331.64111	-0.056853	-2.5293E-05	-0.35935	-0.00015987	-0.4162	-0.00018516	444.88758482945576	74.477	0.55773	74.477	74.247	74.805	0					16	10	2	0	0	0	0.79966	1	27156	27156		6.1918	0.32371	1	2101500			46018	2857	33509	33779	44966	44966					-0.01144975996840003
RVWQWDEKW	9	Unmodified	_RVWQWDEKW_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-SECPEP	A375_MHC_IP_R1	1	667.2282104492188	2	666.827829	1331.64111	-0.57404	-0.00038279	0.17589	0.00011729	-0.39815	-0.0002655	666.8280779045841	74.477	0.4563	74.477	74.247	74.704	0					21	8	3	0	0	0	0.11606	1	27119	27119		81.915	43.74	1	6924800			46019	2857	33509	33779	44967	44967					-0.01144975996840003
RVWQWDEKW	9	Unmodified	_RVWQWDEKW_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	A375_MHC_IP_R2	2	667.7274780273438	2	666.827829	1331.64111	-0.77537	-0.00051704	-0.024849	-1.657E-05	-0.80021	-0.00053361	666.8279787762013	73.657	0.51187	74.392	74.141	74.653	0.7354					22	9	3	0	0	0	0.36834	1	27959	27959		26.268	9.7023	1	5457400			46020	2857	33509	33779	44968	44968					-0.01144975996840003
RVWQWDEKW	9	Unmodified	_RVWQWDEKW_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-SECPEP	A375_MHC_IP_R2	2	445.2876892089844	3	444.887645	1331.64111	-0.34595	-0.00015391	-0.26363	-0.00011728	-0.60958	-0.00027119	444.8875822557237	73.686	0.56205	74.421	74.192	74.754	0.73541					20	10	3	0	0	0	0.79966	1	27984	27984		3.5871	0	1	2114400			46021	2857	33509	33779	44969	44969					-0.01144975996840003
RVYEIGRQF	9	Unmodified	_RVYEIGRQF_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-MSMS	A375_MHC_IP_R1	1	390.29638671875	3	389.88049	1166.61964	0.16727	6.5215E-05	-0.49435	-0.00019274	-0.32708	-0.00012752	389.88029206446953	40.813	0.75685	40.813	40.458	41.215	0					36	14	4	0	0	0	0.016157	1	14095	14095		88.364	64.574	1	14908000			46022	1382	33510	33780	44970	44970					0.04299638974453046
RVYEIGRQF	9	Unmodified	_RVYEIGRQF_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	584.71728515625	2	584.317097	1166.61964	-0.2578	-0.00015064	-0.195	-0.00011394	-0.45279	-0.00026458	584.3170219318561	40.859	0.5041	40.859	40.559	41.063	0					26	9	4	0	0	0	0.35788	1	14057	14057		53.317	30.168	1	11239000			46023	1382	33510	33780	44971	44971					0.04299638974453046
RVYEIGRQF	9	Unmodified	_RVYEIGRQF_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-MSMS	A375_MHC_IP_R2	2	390.2803649902344	3	389.88049	1166.61964	-0.21353	-8.3249E-05	-0.60338	-0.00023525	-0.81691	-0.0003185	389.8801436910777	39.967	0.96445	40.742	40.269	41.234	0.77451					47	18	4	0	0	0	0.0099672	1	14789	14789		121.5	86.571	1	15216000			46024	1382	33510	33780	44972	44972					0.04299638974453046
RVYEIGRQF	9	Unmodified	_RVYEIGRQF_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-MSMS	A375_MHC_IP_R2	2	584.716796875	2	584.317097	1166.61964	-0.5028	-0.0002938	-0.31032	-0.00018132	-0.81312	-0.00047512	584.3168709217167	40.028	0.50665	40.803	40.524	41.031	0.77451					17	9	2	0	0	0	0.13192	1	14793	14793		55.235	22.449	1	12911000			46025	1382	33510	33780	44973	44973					0.04299638974453046
RVYELVEEI	9	Unmodified	_RVYELVEEI_					0	0	0			REV__tr|U7T661|U7T661_FUSNUWingedhelix-turn-helixtranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00118PE=4SV=1	REV__tr|U7T661|U7T661_FUSNUWingedhelix-turn-helixtranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00118PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	383.91876220703125	3	383.876523	1148.60774	-0.16074	-6.1706E-05	-4.2242	-0.0016216	-4.3849	-0.0016833	384.2088222887707	40.135	0.50714	40.909	40.626	41.133	0.77451					13	9	2	0	0	0	0.775	1	14794	14794		4.1895	0.60244	1	1793700	+		46026	28856	33511	33781	44974	44974					0.03937977440614304
RVYPESIPRKF	11	Unmodified	_RVYPESIPRKF_					0	0	0		nc|ENSG00000147231|Q6NSI4-3|RADX;nc|ENSG00000147231|Q6NSI4-4|RADX;ENSG00000147231|ENST00000372548|RADX	nc|ENSG00000147231|Q6NSI4-3|RADX	nc|ENSG00000147231|Q6NSI4-3|RADX	MULTI-MSMS	A375_MHC_IP_R1	1	464.997802734375	3	464.597983	1390.77212	-0.125	-5.8075E-05	-0.28806	-0.00013383	-0.41306	-0.00019191	464.59781387828804	37.256	0.35659	37.256	37.045	37.402	0					22	6	4	0	0	0	0.048026	1	12538	12538		79.697	64.859	1	9636400			46027	5671	33512	33782	44975	44975					0.09236414651195446
RVYPESIPRKF	11	Unmodified	_RVYPESIPRKF_					0	0	0		nc|ENSG00000147231|Q6NSI4-3|RADX;nc|ENSG00000147231|Q6NSI4-4|RADX;ENSG00000147231|ENST00000372548|RADX	nc|ENSG00000147231|Q6NSI4-3|RADX	nc|ENSG00000147231|Q6NSI4-3|RADX	MULTI-MSMS	A375_MHC_IP_R2	2	464.99761962890625	3	464.597983	1390.77212	-0.81378	-0.00037808	0.10028	4.6588E-05	-0.7135	-0.00033149	464.59802310362403	36.346	0.45872	37.117	36.85	37.308	0.7709					25	8	4	0	0	0	0.067925	1	13254	13254		75.941	58.369	1	10945000			46028	5671	33512	33782	44976	44976					0.09236414651195446
RVYPQAVYF	9	Unmodified	_RVYPQAVYF_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	A375_MHC_IP_R1	1	572.20361328125	2	571.803291	1141.59203	-0.049003	-2.802E-05	0.32201	0.00018412	0.273	0.0001561	571.8033867406821	72.038	0.75758	72.038	71.665	72.423	0					30	14	3	0	0	0	0.22013	1	26145	26145		39.957	18.211	1	12850000			46029	9031	33513	33783	44977	44977					0.026897357142161127
RVYPQAVYF	9	Unmodified	_RVYPQAVYF_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	A375_MHC_IP_R2	2	572.2028198242188	2	571.803291	1141.59203	-0.46855	-0.00026792	-0.074831	-4.2789E-05	-0.54338	-0.00031071	571.803216849515	71.181	0.75899	71.915	71.605	72.364	0.73421					34	14	3	0	0	0	0.41879	1	26991	26991		25.399	9.5521	1	10427000			46030	9031	33513	33783	44978	44978					0.026897357142161127
RVYRWLSGD	9	Unmodified	_RVYRWLSGD_					0	0	0			REV__ENST00000595352.1_1_19:7621528-7622340:+|nuORF	REV__ENST00000595352.1_1_19:7621528-7622340:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	576.2320556640625	2	576.301447	1150.58834	-0.19118	-0.00011018	-1.016	-0.00058554	-1.2072	-0.00069571	576.3005063826442	32.198	0.35706	32.935	32.755	33.112	0.73692					15	6	3	0	0	0	0.44183	1	11485	11485		24.021	0	1	5767300	+		46031	16303	33514	33784	44979	44979					0.019070659403496393
RVYSLDDIRRY	11	Unmodified	_RVYSLDDIRRY_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	A375_MHC_IP_R1	1	486.32794189453125	3	485.92828	1454.76301	0.019106	9.284E-06	-0.46783	-0.00022733	-0.44872	-0.00021805	485.92803550350845	48.081	0.506	48.081	47.819	48.325	0					23	9	3	0	0	0	0.54884	1	16916	16916		27.289	19.86	1	8612500			46032	1628	33515	33785	44980	44980					0.05382021294894912
RVYSLDDIRRY	11	Unmodified	_RVYSLDDIRRY_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	A375_MHC_IP_R2	2	486.3282165527344	3	485.92828	1454.76301	-0.4336	-0.0002107	-0.00061894	-3.0076E-07	-0.43422	-0.000211	485.9282459594729	47.337	0.45939	48.099	47.919	48.378	0.76128					20	8	3	0	0	0	0.6669	1	17732	17732		18.122	13.715	1	8249600			46033	1628	33515	33785	44981	44981					0.05382021294894912
RVYTAREQKY	10	Unmodified	_RVYTAREQKY_					0	0	0		ENST00000371711.4_1_20:48252734-48252839:-|nuORF	ENST00000371711.4_1_20:48252734-48252839:-|nuORF	ENST00000371711.4_1_20:48252734-48252839:-|nuORF	MSMS	A375_MHC_IP_R1	1	438.9688720703125	3	438.570204	1312.68878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.214	1	21.214	20.714	21.714	0								0	0	0	0.15531	1	5547	5547		3.5871	0.26742	1				46034	11181	33516	33786	44982	44982					0.04494678203377589
RVYTSKSDVW	10	Unmodified	_RVYTSKSDVW_					0	0	0		nc|ENSG00000167601|P30530-2|AXL;ENSG00000167601|ENST00000301178|AXL;ENSG00000153208|ENST00000295408|MERTK;AXL|p.D723N|1|0.36|ENSG00000167601|chr19:41256582-41256582|G/A|missense_variant	nc|ENSG00000167601|P30530-2|AXL	nc|ENSG00000167601|P30530-2|AXL	MULTI-MSMS	A375_MHC_IP_R1	1	621.2194213867188	2	620.81967	1239.62479	-0.49928	-0.00030996	0.035559	2.2076E-05	-0.46372	-0.00028788	620.8196727819612	31.237	0.70842	31.237	30.959	31.667	0					40	13	4	0	0	0	0.094387	1	9963	9963		80.896	51.055	1	35087000			46035	7198	33517	33787	44983	44983					0.014558980464244087
RVYTSKSDVW	10	Unmodified	_RVYTSKSDVW_					0	0	0		nc|ENSG00000167601|P30530-2|AXL;ENSG00000167601|ENST00000301178|AXL;ENSG00000153208|ENST00000295408|MERTK;AXL|p.D723N|1|0.36|ENSG00000167601|chr19:41256582-41256582|G/A|missense_variant	nc|ENSG00000167601|P30530-2|AXL	nc|ENSG00000167601|P30530-2|AXL	MULTI-MSMS	A375_MHC_IP_R1	1	414.615478515625	3	414.215539	1239.62479	0.25875	0.00010718	-0.41108	-0.00017027	-0.15233	-6.3096E-05	414.2153570616953	31.3	0.60618	31.3	30.959	31.565	0					33	11	4	0	0	0	0.12083	1	9973	9973		59.177	43.639	1	18802000			46036	7198	33517	33787	44984	44984					0.014558980464244087
RVYTSKSDVW	10	Unmodified	_RVYTSKSDVW_					0	0	0		nc|ENSG00000167601|P30530-2|AXL;ENSG00000167601|ENST00000301178|AXL;ENSG00000153208|ENST00000295408|MERTK;AXL|p.D723N|1|0.36|ENSG00000167601|chr19:41256582-41256582|G/A|missense_variant	nc|ENSG00000167601|P30530-2|AXL	nc|ENSG00000167601|P30530-2|AXL	MULTI-MSMS	A375_MHC_IP_R2	2	621.2192993164062	2	620.81967	1239.62479	-0.73188	-0.00045436	-0.21621	-0.00013422	-0.94808	-0.00058859	620.8195378258449	30.463	0.707	31.182	30.911	31.618	0.71857					37	13	4	0	0	0	0.11158	1	10677	10677		68.76	34.358	1	39692000			46037	7198	33517	33787	44985	44985					0.014558980464244087
RVYTSKSDVW	10	Unmodified	_RVYTSKSDVW_					0	0	0		nc|ENSG00000167601|P30530-2|AXL;ENSG00000167601|ENST00000301178|AXL;ENSG00000153208|ENST00000295408|MERTK;AXL|p.D723N|1|0.36|ENSG00000167601|chr19:41256582-41256582|G/A|missense_variant	nc|ENSG00000167601|P30530-2|AXL	nc|ENSG00000167601|P30530-2|AXL	MULTI-MSMS	A375_MHC_IP_R2	2	414.6156005859375	3	414.215539	1239.62479	-0.0075695	-3.1354E-06	-0.59914	-0.00024817	-0.60671	-0.00025131	414.2152638813101	30.448	0.60514	31.167	30.962	31.567	0.71857					31	11	4	0	0	0	0.17118	1	10689	10689		52.193	33.049	1	22079000			46038	7198	33517	33787	44986	44986					0.014558980464244087
RVYVDITTY	9	Unmodified	_RVYVDITTY_					0	0	0		nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT	MULTI-MSMS	A375_MHC_IP_R1	1	565.6979370117188	2	565.298039	1128.58152	-0.55595	-0.00031428	1.0032	0.00056709	0.44722	0.00025281	565.2985458360905	65.942	1.0667	65.942	65.514	66.58	0					52	20	4	0	0	0	0.06083	1	23846	23846		60.074	10.52	1	12900000			46039	3874;14576	33518	33788	44987	44987					0.02237708269126415
RVYVDITTY	9	Unmodified	_RVYVDITTY_					0	0	0		nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT	MULTI-SECPEP	A375_MHC_IP_R2	2	565.697509765625	2	565.298039	1128.58152	-0.52328	-0.00029581	0.16058	9.0773E-05	-0.3627	-0.00020503	565.2980486419592	65.134	0.9637	65.872	65.511	66.475	0.73812					51	18	4	0	0	0	0.16764	1	24656	24656		60.074	10.52	1	10585000			46040	3874;14576	33518	33788	44988	44988					0.02237708269126415
RWAESGGQVP	10	Unmodified	_RWAESGGQVP_					0	0	0			REV__TEX19|p.G99R|1|0.8|ENSG00000182459|chr17:82362445-82362445|G/A|missense_variant	REV__TEX19|p.G99R|1|0.8|ENSG00000182459|chr17:82362445-82362445|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	544.1693115234375	2	543.76998	1085.52541	-1.0584	-0.00057552	-0.20195	-0.00010981	-1.2603	-0.00068533	543.7698026545553	26.831	0.25653	27.491	27.363	27.62	0.65992					7	4	2	0	0	0	0.90513	1	9146	9146		12.241	3.4953	1	2938700	+		46041	28099	33519	33789	44989	44989					-0.013934998476770488
RWAMVRLLVLN	11	Unmodified	_RWAMVRLLVLN_					0	0	0			REV__ENSG00000158428|ENST00000289388|CATIP	REV__ENSG00000158428|ENST00000289388|CATIP	MULTI-MSMS	A375_MHC_IP_R2	2	457.6824645996094	3	457.607825	1369.80165	-0.16344	-7.4792E-05	0.78074	0.00035727	0.6173	0.00028248	457.60821410917373	135.41	0.81805	135.55	135.25	136.07	0.13901					18	15	2	0	0	0	0.73658	1	53396	53396		2.6312	2.6312	1	667660	+		46042	20075	33520	33790	44990	44990					0.13153655395740316
RWCSIKWIRRY	11	Unmodified	_RWCSIKWIRRY_					0	0	0			REV__nc|ENSG00000111581|P57740-3|NUP107	REV__nc|ENSG00000111581|P57740-3|NUP107	MULTI-SECPEP	A375_MHC_IP_R2	2	392.58380126953125	4	392.467315	1565.84016	-0.49172	-0.00019299	1.5074	0.00059161	1.0157	0.00039863	392.46794051414173	23.413	0.20083	24.043	23.928	24.129	0.63014					5	3	2	0	0	0	1.0011	1	7490	7490		1.3296	0.92138	1	4281700	+		46043	17677	33521	33791	44991	44991					0.079869610302012
RWDKRRWRKIP	11	Unmodified	_RWDKRRWRKIP_					0	0	0		nc|ENSG00000168539|P11229-2|CHRM1;ENSG00000168539|ENST00000306960|CHRM1	nc|ENSG00000168539|P11229-2|CHRM1	nc|ENSG00000168539|P11229-2|CHRM1	MSMS	A375_MHC_IP_R2	2	798.9690551757812	2	798.970942	1595.92733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.04	1	42.815	42.315	43.315	0.77451								0	0	0	0.16355	1	15626	15626		0.26902	0.26902	1				46044	7317	33522	33792	44992	44992					0.15320503296129573
RWDQRRRSRPL	11	Unmodified	_RWDQRRRSRPL_					0	0	0		chr14:102233789-102234530|145|11.86|0.07|7.42|-|2|TE_info:HERVFH21-int,HERVFH21-int_dup103,ERV1,LTR,donor,+,102234530,102239533|MOK,None|81	chr14:102233789-102234530|145|11.86|0.07|7.42|-|2|TE_info:HERVFH21-int,HERVFH21-int_dup103,ERV1,LTR,donor,+,102234530,102239533|MOK,None|81	chr14:102233789-102234530|145|11.86|0.07|7.42|-|2|TE_info:HERVFH21-int,HERVFH21-int_dup103,ERV1,LTR,donor,+,102234530,102239533|MOK,None|81	MULTI-SECPEP	A375_MHC_IP_R2	2	509.361572265625	3	509.290546	1524.84981	-0.665	-0.00033868	-0.39879	-0.0002031	-1.0638	-0.00054177	509.62456459804605	133.63	0.66043	133.8	133.4	134.06	0.16487					20	12	3	0	0	0	1.0014	1	52472	52472		0	0	1	1935400			46045	430	33523	33793	44993	44993					0.10837865359962962
RWDWLHMTG	9	Unmodified	_RWDWLHMTG_					0	0	0			REV__nc|ENSG00000171566|O43660-2|PLRG1	REV__nc|ENSG00000171566|O43660-2|PLRG1	MULTI-SECPEP	A375_MHC_IP_R1	1	601.6954345703125	2	601.2822	1200.54985	-0.46237	-0.00027802	-0.033153	-1.9934E-05	-0.49553	-0.00029795	601.2808150115611	65.202	0.45679	65.202	64.954	65.411	0					14	8	3	0	0	0	0.71541	1	23636	23636		7.2892	0	1	1089800	+		46046	21079	33524	33794	44994	44994					-0.04240562965810568
RWEKLRGLM	9	Unmodified	_RWEKLRGLM_					0	0	0		ENSG00000197599|ENST00000389176|CCDC154	ENSG00000197599|ENST00000389176|CCDC154	ENSG00000197599|ENST00000389176|CCDC154	MULTI-SECPEP	A375_MHC_IP_R2	2	396.2557067871094	3	396.893854	1187.65973	-0.12297	-4.8807E-05	0.091267	3.6223E-05	-0.031705	-1.2584E-05	396.893913723576	30.478	0.30357	31.197	31.013	31.317	0.71857					8	5	2	0	0	0	0.76827	1	10707	10707		7.1017	0.47135	1	608450			46047	9176	33525	33795	44995	44995					0.07340862373393975
RWELFFLFVLI	11	Unmodified	_RWELFFLFVLI_					0	0	0			REV__tr|U7SUJ0|U7SUJ0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01184PE=4SV=1	REV__tr|U7SUJ0|U7SUJ0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01184PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	495.1559143066406	3	494.955108	1481.84349	-0.46201	-0.00022867	-3.2402	-0.0016037	-3.7022	-0.0018324	494.9532731656852	94.286	0.15195	94.286	94.191	94.343	0					4	2	2	0	0	0	1.0004	1	34658	34658		1.2148	0.80657	1	652610	+		46048	28562	33526	33796	44996	44996					0.12184534355878895
RWFILLFLRRK	11	Unmodified	_RWFILLFLRRK_					0	0	0			REV__ENST00000375398.6_1_10:29923707-29923890:-|nuORF	REV__ENST00000375398.6_1_10:29923707-29923890:-|nuORF	MSMS	A375_MHC_IP_R1	1	774.485595703125	2	774.487905	1546.96126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.89	1	135.89	135.39	136.39	0								0	0	0	0.16358	1	52362	52362		0	0	1		+		46049	24128	33527	33797	44997	44997					0.20965531735168952
RWFQQWRHNL	10	Unmodified	_RWFQQWRHNL_					0	0	0			REV__SPTBN2|p.R944W|1|0.19|ENSG00000173898|chr11:66701269-66701269|G/A|missense_variant	REV__SPTBN2|p.R944W|1|0.19|ENSG00000173898|chr11:66701269-66701269|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	490.66827392578125	3	490.921571	1469.74288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.97	1	132.16	131.66	132.66	0.18953								0	0	0	0.15583	1	51912	51912		1.9064	0.45126	1		+		46050	28040	33528	33798	44998	44998					0.026803151456078922
RWFWEAYFQSI	11	Unmodified	_RWFWEAYFQSI_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;EXT2|p.D431Afs*5|1|0.05|ENSG00000151348|chr11:44171729-44171729|A/-|frameshift_variant;ENST00000534048.1_1_11:44151622-44219579:+|nuORF;ENST00000531161.5_1_11:44146432-44228372:+|nuORF;ENST00000525559.1_1_11:44148473-44193310:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MSMS	A375_MHC_IP_R1	1	511.5999450683594	3	511.582221	1531.72483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.732	1	83.732	83.232	84.232	0								0	0	0	0.16275	1	30646	30646		4.4062	3.0765	1				46051	5898	33529	33799	44999	44999					-0.01975864619771528
RWGRRVRW	8	Unmodified	_RWGRRVRW_					0	0	0			REV__nc|ENSG00000182310|W5XKT8-3|SPACA6	REV__nc|ENSG00000182310|W5XKT8-3|SPACA6	MULTI-MSMS	A375_MHC_IP_R1	1	391.61224365234375	3	391.228447	1170.66351	0.28323	0.00011081	0.16178	6.3293E-05	0.44501	0.0001741	391.22813974083937	47.717	0.50373	47.717	47.517	48.02	0					18	9	3	0	0	0	0.77488	1	16781	16781		10.074	3.0368	1	1277700	+		46052	27393	33530	33800	45000	45000					0.08500712982117875
RWHRKRRKLLL	11	Unmodified	_RWHRKRRKLLL_					0	0	0		ENST00000416673.6_1_2:114369763-114384446:-|nuORF	ENST00000416673.6_1_2:114369763-114384446:-|nuORF	ENST00000416673.6_1_2:114369763-114384446:-|nuORF	MSMS	A375_MHC_IP_R2	2	781.5067138671875	2	781.504952	1560.99535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.9	1	137.98	137.48	138.48	0.083969								0	0	0	0.1636	1	54100	54100		0	0	1				46053	11693	33531	33801	45001	45001					0.23729372946831973
RWILRVDKWIH	11	Unmodified	_RWILRVDKWIH_					0	0	0		ENST00000367608.6_1_6:142725093-142726867:+|nuORF	ENST00000367608.6_1_6:142725093-142726867:+|nuORF	ENST00000367608.6_1_6:142725093-142726867:+|nuORF	MSMS	A375_MHC_IP_R2	2	761.4429931640625	2	761.443695	1520.87284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.682	1	97.438	96.938	97.938	0.75586								0	0	0	0.16353	1	36704	36704		0.35063	0	1				46054	11097	33532	33802	45002	45002					0.13323491424739586
RWISENQDSAD	11	Unmodified	_RWISENQDSAD_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.R3751Gfs*17|1|0.29|ENSG00000103657|chr15:63643484-63643484|G/-|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	A375_MHC_IP_R1	1	661.2428588867188	2	660.79438	1319.57421	-0.7124	-0.00047075	0.8744	0.0005778	0.162	0.00010705	661.2966333234687	84.541	0.7155	84.541	84.391	85.107	0					17	13	2	0	0	0	0.73189	1	31180	31180		7.1017	1.8048	1	1638000			46055	2464	33533	33803	45003	45003					-0.07279676069219931
RWIYLNQRR	9	Unmodified	_RWIYLNQRR_					0	0	0			REV__ENST00000521082.5_1_7:23205510-23207476:+|nuORF	REV__ENST00000521082.5_1_7:23205510-23207476:+|nuORF	MSMS	A375_MHC_IP_R2	2	435.6506042480469	3	435.582667	1303.72617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.06	1	129.3	128.8	129.8	0.23946								0	0	0	0.15486	1	50713	50713		1.0715	0.3738	1		+		46056	25715	33534	33804	45004	45004					0.08645814259625695
RWKISRRNDT	10	Unmodified	_RWKISRRNDT_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MSMS	A375_MHC_IP_R2	2	666.430908203125	2	666.368184	1330.72182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.157	1	9.604	9.104	10.104	0.44698								0	0	0	0.15631	1	2854	2854		0.35063	0	1		+		46057	19778	33535	33805	45005	45005					0.06968305046075329
RWKMWTLRKKR	11	Unmodified	_RWKMWTLRKKR_					0	0	0		ENST00000420660.5_1_2:219134176-219134257:-|nuORF	ENST00000420660.5_1_2:219134176-219134257:-|nuORF	ENST00000420660.5_1_2:219134176-219134257:-|nuORF	MSMS	A375_MHC_IP_R1	1	794.9437255859375	2	794.972096	1587.92964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.37	1	117.37	116.87	117.87	0								0	0	0	0.16354	1	43098	43098		0.30703	0	1				46058	11727	33536	33806	45006	45006					0.1591921570957311
RWKRWFKFRKR	11	Unmodified	_RWKRWFKFRKR_					0	0	0		nc|ENSG00000164542|Q8NCT3|MATCAP2	nc|ENSG00000164542|Q8NCT3|MATCAP2	nc|ENSG00000164542|Q8NCT3|MATCAP2	MSMS	A375_MHC_IP_R2	2	847.0385131835938	2	847.504952	1692.99535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.07	1	124.4	123.9	124.9	0.32969								0	0	0	0.1636	1	47877	47877		0	0	1				46059	14730	33537	33807	45007	45007					0.17657372946791838
RWKRYRRWMKN	11	Unmodified	_RWKRYRRWMKN_					0	0	0		ENSG00000059769|ENST00000313525|DNAJC25;nc|ENSG00000059769|Q9H1X3-2|DNAJC25;ENST00000463589.5_1_9:114405367-114415499:+|nuORF	ENSG00000059769|ENST00000313525|DNAJC25	ENSG00000059769|ENST00000313525|DNAJC25	MSMS	A375_MHC_IP_R2	2	840.4625244140625	2	840.462427	1678.9103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.614	1	98.37	97.87	98.87	0.75586								0	0	0	0.1636	1	37047	37047		0	0	1				46060	1306	33538	33808	45008	45008					0.09800259418693713
RWKWALKIVYI	11	Unmodified	_RWKWALKIVYI_					0	0	0		ENST00000489656.5_1_10:70917876-70917945:+|nuORF	ENST00000489656.5_1_10:70917876-70917945:+|nuORF	ENST00000489656.5_1_10:70917876-70917945:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	738.8480224609375	2	738.447914	1474.88128	-0.79807	-0.00058933	0.68029	0.00050236	-0.11778	-8.6972E-05	738.4482702670025	133.49	1.4724	133.49	133.1	134.57	0					81	28	4	0	0	0	0.73881	1	51680	51680		0	0	1	44509000			46061	12638	33539	33809	45009	45009					0.16283045341356228
RWKWALKIVYI	11	Unmodified	_RWKWALKIVYI_					0	0	0		ENST00000489656.5_1_10:70917876-70917945:+|nuORF	ENST00000489656.5_1_10:70917876-70917945:+|nuORF	ENST00000489656.5_1_10:70917876-70917945:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	493.03424072265625	3	492.634368	1474.88128	-0.46091	-0.00022706	0.20256	9.9788E-05	-0.25835	-0.00012727	492.96889107180425	132.6	1.0692	132.79	132.15	133.22	0.18954					66	20	4	0	0	0	0.73881	1	52223	52223		0.50596	0.41111	1	21729000			46062	12638	33539	33809	45010	45010					0.16283045341356228
RWKWALKIVYI	11	Unmodified	_RWKWALKIVYI_					0	0	0		ENST00000489656.5_1_10:70917876-70917945:+|nuORF	ENST00000489656.5_1_10:70917876-70917945:+|nuORF	ENST00000489656.5_1_10:70917876-70917945:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	738.8474731445312	2	738.447914	1474.88128	-0.78532	-0.00057992	0.61896	0.00045707	-0.16636	-0.00012285	738.4480938866732	132.61	1.2704	132.79	131.9	133.17	0.18672					64	24	4	0	0	0	0.73881	1	52225	52225		0	0	1	14592000			46063	12638	33539	33809	45011	45011					0.16283045341356228
RWKWALKIVYI	11	Unmodified	_RWKWALKIVYI_					0	0	0		ENST00000489656.5_1_10:70917876-70917945:+|nuORF	ENST00000489656.5_1_10:70917876-70917945:+|nuORF	ENST00000489656.5_1_10:70917876-70917945:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	493.0344543457031	3	492.634368	1474.88128	-0.43356	-0.00021359	0.4629	0.00022804	0.029334	1.4451E-05	492.6345144703167	133.43	2.0326	133.6	132.99	135.03	0.16487					106	39	5	0	0	0	0.73881	1	52667	52667		0.50596	0.41111	1	41339000			46064	12638	33539	33809	45012	45012					0.16283045341356228
RWKWALKIVYI	11	Unmodified	_RWKWALKIVYI_					0	0	0		ENST00000489656.5_1_10:70917876-70917945:+|nuORF	ENST00000489656.5_1_10:70917876-70917945:+|nuORF	ENST00000489656.5_1_10:70917876-70917945:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	738.8482055664062	2	738.447914	1474.88128	-0.75733	-0.00055925	0.65828	0.00048611	-0.099046	-7.314E-05	738.4482411691007	133.39	1.2203	133.55	133.15	134.37	0.16487					74	23	4	0	0	0	0.73881	1	52670	52670		0	0	1	32063000			46065	12638	33539	33809	45013	45013					0.16283045341356228
RWKWALKIVYI	11	Unmodified	_RWKWALKIVYI_					0	0	0		ENST00000489656.5_1_10:70917876-70917945:+|nuORF	ENST00000489656.5_1_10:70917876-70917945:+|nuORF	ENST00000489656.5_1_10:70917876-70917945:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	738.9136962890625	2	738.447914	1474.88128	-0.73144	-0.00054013	0.20999	0.00015506	-0.52145	-0.00038507	738.4480831120686	134.38	0.20496	134.52	134.34	134.55	0.13901					5	3	2	0	0	0	0.73881	1	52814	52814		0.35063	0	1	1115500			46066	12638	33539	33809	45014	45014					0.16283045341356228
RWKWMRSRFTR	11	Unmodified	_RWKWMRSRFTR_					0	0	0			REV__ENST00000359013.4_1_3:30648217-30664756:+|nuORF	REV__ENST00000359013.4_1_3:30648217-30664756:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	538.0269165039062	3	537.293011	1608.8572	-0.62473	-0.00033566	-2.2706	-0.00122	-2.8953	-0.0015556	537.2899044220295	70.762	0.46001	70.762	70.545	71.005	0					26	8	4	0	0	0	0.73807	1	25740	25740		1.2148	0.76031	1	4621600	+		46067	23869	33540	33810	45015	45015					0.07712881636007296
RWLGRWRRKRR	11	Unmodified	_RWLGRWRRKRR_					0	0	0		ENSG00000283093|ENST00000634648|CENPVL2;ENSG00000223591|ENST00000602548|CENPVL1	ENSG00000283093|ENST00000634648|CENPVL2	ENSG00000283093|ENST00000634648|CENPVL2	MSMS	A375_MHC_IP_R2	2	813.4020385742188	2	813.49545	1624.97635	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.44	1	110.19	109.69	110.69	0.74684								0	0	0	0.1636	1	41301	41301		0	0	1				46068	9686	33541	33811	45016	45016					0.18885836375739018
RWLIWTLWVF	10	Unmodified	_RWLIWTLWVF_					0	0	0		ENST00000199448.8_2_7:37990187-37990421:+|nuORF	ENST00000199448.8_2_7:37990187-37990421:+|nuORF	ENST00000199448.8_2_7:37990187-37990421:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	710.7990112304688	2	710.400433	1418.78631	-0.8443	-0.00059979	-0.60955	-0.00043303	-1.4538	-0.0010328	710.3994603533217	132.91	1.8851	132.91	132.18	134.07	0					114	36	5	0	0	0	0.71944	1	51438	51438		3.5965	0.60125	1	36687000			46069	10075	33542	33812	45017	45017					0.0936711187016499
RWLMMDIYMN	10	Unmodified	_RWLMMDIYMN_					0	0	0			REV__nc|ENSG00000107036|Q4ADV7-2|RIC1	REV__nc|ENSG00000107036|Q4ADV7-2|RIC1	MSMS	A375_MHC_IP_R1	1	686.8115844726562	2	686.814161	1371.61377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.69	1	122.69	122.19	123.19	0								0	0	0	0.15207	1	45705	45705		13.906	0.86358	1		+		46070	17472	33543	33813	45018	45018					-0.05717286915364639
RWLRHLLRSP	10	Unmodified	_RWLRHLLRSP_					0	0	0			REV__ENST00000389561.6_1_12:132551999-132562003:+|nuORF	REV__ENST00000389561.6_1_12:132551999-132562003:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	667.7883911132812	2	667.40183	1332.78911	-0.6119	-0.00040838	-1.1818	-0.00078871	-1.7937	-0.0011971	667.4011685729904	144.99	0.55055	145.01	144.89	145.44	0.021408					41	27	2	0	0	0	0.95026	1	56604	56604		0.45834	0.057624	1	876970	+		46071	24254	33544	33814	45019	45019					0.13602380047677798
RWLWWQPWWWK	11	Unmodified	_RWLWWQPWWWK_					0	0	0		chr12:54282820-54283827|472|28.13|0.0|21.42|+|1|HNRNPA1,HNRNPA1|1	chr12:54282820-54283827|472|28.13|0.0|21.42|+|1|HNRNPA1,HNRNPA1|1	chr12:54282820-54283827|472|28.13|0.0|21.42|+|1|HNRNPA1,HNRNPA1|1	MSMS	A375_MHC_IP_R1	1	586.6909790039062	3	586.63325	1756.87792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.094	1	51.094	50.594	51.594	0								0	0	0	0.1635	1	18125	18125		0.50596	0.09769	1				46072	412	33545	33815	45020	45020					0.029757952873296745
RWNDSNRSQRE	11	Unmodified	_RWNDSNRSQRE_					0	0	0			REV__ENST00000518477.5_1_5:78317432-78365396:-|nuORF	REV__ENST00000518477.5_1_5:78317432-78365396:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	724.7427368164062	2	724.342895	1446.67124	-0.81218	-0.0005883	0.83706	0.00060632	0.024877	1.802E-05	724.3435719963605	82.445	0.50725	83.188	82.889	83.397	0.74293					23	9	3	0	0	0	0.98603	1	31302	31302		15.739	8.6369	1	5139400	+		46073	25675	33546	33816	45021	45021					-0.03423269069617163
RWPDYVREL	9	Unmodified	_RWPDYVREL_					0	0	0		nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	MULTI-SECPEP	A375_MHC_IP_R1	1	617.7223510742188	2	617.32238	1232.63021	0.13045	8.0532E-05	-0.25763	-0.00015904	-0.12718	-7.851E-05	617.3219845859534	69.473	0.8629	69.473	68.969	69.832	0					37	16	3	0	0	0	0.53783	1	25144	25144		28.234	5.5755	1	2705900			46074	7918	33547	33817	45022	45022					0.023196216288852156
RWPLDRKEQDY	11	Unmodified	_RWPLDRKEQDY_					0	0	0			REV__ENST00000492494.5_1_1:45798942-45805603:-|nuORF	REV__ENST00000492494.5_1_1:45798942-45805603:-|nuORF	MSMS	A375_MHC_IP_R2	2	502.6009826660156	3	502.588035	1504.74228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.349	1	32.067	31.567	32.567	0.71857								0	0	0	0.1635	1	11075	11075		0.50596	0.051438	1		+		46075	18680	33548	33818	45023	45023					0.01009430915246412
RWPWQGSL	8	Unmodified	_RWPWQGSL_					0	0	0		ENST00000577043.1_1_16:2867692-2871170:+|nuORF;nc|ENSG00000007038|Q9Y6M0-3|PRSS21;nc|ENSG00000007038|Q9Y6M0-2|PRSS21;ENSG00000007038|ENST00000005995|PRSS21	ENST00000577043.1_1_16:2867692-2871170:+|nuORF	ENST00000577043.1_1_16:2867692-2871170:+|nuORF	MSMS	A375_MHC_IP_R1	1	515.1734619140625	2	515.266876	1028.5192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.805	1	99.805	99.305	100.3	0								0	0	0	0.16876	1	36671	36671		24.674	2.9272	1				46076	13646	33549	33819	45024	45024					0.00608026711461207
RWPWWRCSWRR	11	Unmodified	_RWPWWRCSWRR_					0	0	0		chr7:102441950-102446513|111|10.41|0.15|6.09|+|1|None,ORAI2|1	chr7:102441950-102446513|111|10.41|0.15|6.09|+|1|None,ORAI2|1	chr7:102441950-102446513|111|10.41|0.15|6.09|+|1|None,ORAI2|1	MSMS	A375_MHC_IP_R2	2	558.9741821289062	3	558.949356	1673.82624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.774	1	83.517	83.017	84.017	0.74293								0	0	0	0.1636	1	31447	31447		0	0	1				46077	499	33550	33820	45025	45025					0.016277283217732474
RWPWWRCSWRR	11	Unmodified	_RWPWWRCSWRR_					0	0	0		chr7:102441950-102446513|111|10.41|0.15|6.09|+|1|None,ORAI2|1	chr7:102441950-102446513|111|10.41|0.15|6.09|+|1|None,ORAI2|1	chr7:102441950-102446513|111|10.41|0.15|6.09|+|1|None,ORAI2|1	MULTI-SECPEP	A375_MHC_IP_R2	2	837.3995361328125	2	837.920395	1673.82624	-0.53902	-0.00045166	1.0945	0.0009171	0.55548	0.00046544	838.4236128229336	114.72	0.45882	115.41	115.17	115.63	0.68999					10	8	2	0	0	0	1.0015	1	43244	43244		0	0	1	2446900			46078	499	33550	33820	45026	45026					0.016277283217732474
RWQNNKRQDFR	11	Unmodified	_RWQNNKRQDFR_					0	0	0		ENSG00000148158|ENST00000374232|SNX30;ENST00000604751.1_1_9:115618996-115637523:+|nuORF	ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	MSMS	A375_MHC_IP_R1	1	774.4265747070312	2	774.400547	1546.78654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.09	1	117.09	116.59	117.59	0								0	0	0	0.16307	1	42969	42969		2.7352	0.23671	1				46079	5719	33551	33821	45027	45027					0.03501879852046841
RWQQQWQQQWW	11	Unmodified	_RWQQQWQQQWW_					0	0	0			REV__ENST00000253055.7_1_19:40718724-40719087:+|nuORF	REV__ENST00000253055.7_1_19:40718724-40719087:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	562.6185302734375	3	563.267407	1686.78039	-0.64068	-0.00036088	-0.30542	-0.00017203	-0.9461	-0.00053291	563.2669495384863	30.934	0.25244	30.934	30.806	31.059	0					6	4	2	0	0	0	1.0015	1	9841	9841		0	0	1	986400	+		46080	23134	33552	33822	45028	45028					-0.03552638379437667
RWQQTSKSS	9	Unmodified	_RWQQTSKSS_					0	0	0		nc|ENSG00000006740|Q17R89-2|ARHGAP44;nc|ENSG00000006740|Q17R89-3|ARHGAP44;ENSG00000006740|ENST00000379672|ARHGAP44;ARHGAP44|p.R153Q|2|0.31|ENSG00000006740|chr17:12919825-12919825|G/A|missense_variant;ENST00000578442.1_1_17:12693973-12832444:+|nuORF	nc|ENSG00000006740|Q17R89-2|ARHGAP44	nc|ENSG00000006740|Q17R89-2|ARHGAP44	MULTI-MSMS	A375_MHC_IP_R1	1	554.6797485351562	2	554.280712	1106.54687	-0.53998	-0.0002993	-0.98065	-0.00054355	-1.5206	-0.00084285	554.2799923901309	46.22	0.55294	46.22	46.043	46.596	0					22	10	3	0	0	0	0.4867	1	16211	16211		20.454	0	1	6121900			46081	928	33553	33823	45029	45029					-0.0021411481895938778
RWQQTSKSS	9	Unmodified	_RWQQTSKSS_					0	0	0		nc|ENSG00000006740|Q17R89-2|ARHGAP44;nc|ENSG00000006740|Q17R89-3|ARHGAP44;ENSG00000006740|ENST00000379672|ARHGAP44;ARHGAP44|p.R153Q|2|0.31|ENSG00000006740|chr17:12919825-12919825|G/A|missense_variant;ENST00000578442.1_1_17:12693973-12832444:+|nuORF	nc|ENSG00000006740|Q17R89-2|ARHGAP44	nc|ENSG00000006740|Q17R89-2|ARHGAP44	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	554.280712	1106.54687	-0.53998	-0.0002993	-0.98065	-0.00054355	-1.5206	-0.00084285	554.2799923901309	46.22	0.55294	46.22	46.043	46.596	0	-0.021554	0.00012947	NaN	20.454	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6121900			46082	928	33553	33823							-0.0021411481895938778
RWQQTSKSS	9	Unmodified	_RWQQTSKSS_					0	0	0		nc|ENSG00000006740|Q17R89-2|ARHGAP44;nc|ENSG00000006740|Q17R89-3|ARHGAP44;ENSG00000006740|ENST00000379672|ARHGAP44;ARHGAP44|p.R153Q|2|0.31|ENSG00000006740|chr17:12919825-12919825|G/A|missense_variant;ENST00000578442.1_1_17:12693973-12832444:+|nuORF	nc|ENSG00000006740|Q17R89-2|ARHGAP44	nc|ENSG00000006740|Q17R89-2|ARHGAP44	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	554.280712	1106.54687	-0.80449	-0.00044591	-1.1471	-0.00063581	-1.9516	-0.0010817	554.2800559545319	45.498	0.40472	46.263	46.048	46.453	0.76519	0.021554	-5.5036E-05	NaN	20.454	18	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6254600			46083	928	33553	33823							-0.0021411481895938778
RWQVERRRWQW	11	Unmodified	_RWQVERRRWQW_					0	0	0		ENST00000508390.1_1_3:131245302-131245881:+|nuORF	ENST00000508390.1_1_3:131245302-131245881:+|nuORF	ENST00000508390.1_1_3:131245302-131245881:+|nuORF	MSMS	A375_MHC_IP_R2	2	843.79541015625	2	843.447831	1684.88111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.257	1	82.002	81.502	82.502	0.74474								0	0	0	0.1636	1	30855	30855		0	0	1				46084	12878	33554	33824	45030	45030					0.06606438394055658
RWRAGASSSIY	11	Unmodified	_RWRAGASSSIY_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-SECPEP	A375_MHC_IP_R1	1	627.6972045898438	2	627.322911	1252.63127	-0.53571	-0.00033606	-0.23965	-0.00015034	-0.77536	-0.0004864	627.322797954275	68.78	0.50513	68.78	68.514	69.02	0					16	9	2	0	0	0	0.98748	1	24861	24861		8.7454	1.1365	1	1805300	+		46085	19022	33555	33825	45031	45031					0.015058359978183944
RWREERRKNYP	11	Unmodified	_RWREERRKNYP_					0	0	0		ENSG00000083635|ENST00000379161|NUFIP1	ENSG00000083635|ENST00000379161|NUFIP1	ENSG00000083635|ENST00000379161|NUFIP1	MSMS	A375_MHC_IP_R1	1	794.9794311523438	2	795.424022	1588.83349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.495	1	48.495	47.995	48.995	0								0	0	0	0.16337	1	17112	17112		1.1933	0.88631	1				46086	1782	33556	33826	45032	45032					0.0626273940322335
RWRERAVRWPR	11	Unmodified	_RWRERAVRWPR_					0	0	0		ENST00000436427.1_3_1:43148660-43161876:+|nuORF	ENST00000436427.1_3_1:43148660-43161876:+|nuORF	ENST00000436427.1_3_1:43148660-43161876:+|nuORF	MSMS	A375_MHC_IP_R2	2	784.0975952148438	2	784.445092	1566.87563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.673	1	78.416	77.916	78.916	0.74293								0	0	0	0.16355	1	29495	29495		0.26902	0.26902	1				46087	11927	33557	33827	45033	45033					0.11486759602234997
RWRERRYDEK	10	Unmodified	_RWRERRYDEK_					0	0	0			REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2	REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2	MSMS	A375_MHC_IP_R1	1	498.642822265625	3	498.595524	1492.76474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.393	1	32.393	31.893	32.893	0								0	0	0	0.15486	1	10462	10462		5.0475	0.3316	1		+		46088	19802	33558	33828	45034	45034					0.03807075103509305
RWRFWWEYVN	10	Unmodified	_RWRFWWEYVN_					0	0	0			REV__ENSG00000127995|ENST00000297273|CASD1	REV__ENSG00000127995|ENST00000297273|CASD1	MSMS	A375_MHC_IP_R1	1	514.6417236328125	3	514.586077	1540.7364	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57	1	57	56.5	57.5	0								0	0	0	0.15597	1	20433	20433		1.4551	0.12547	1		+		46089	18438	33559	33829	45035	45035					-0.012336228057620247
RWRFYWKMVYE	11	Unmodified	_RWRFYWKMVYE_					0	0	0		ENSG00000206579|ENST00000327381|XKR4	ENSG00000206579|ENST00000327381|XKR4	ENSG00000206579|ENST00000327381|XKR4	MULTI-SECPEP	A375_MHC_IP_R2	2	554.7056274414062	3	555.278256	1662.81294	-0.77746	-0.00043171	1.6646	0.0009243	0.8871	0.00049259	555.613049840283	82.807	0.40173	83.55	83.347	83.749	0.74293					11	7	2	0	0	0	1.0014	1	31483	31483		0.45452	0	1	1074700			46090	9547	33560	33830	45036	45036					0.00804432699192148
RWRHFLLWRRK	11	Unmodified	_RWRHFLLWRRK_					0	0	0			REV__ENST00000603928.2_2_9:136890984-136891107:+|nuORF	REV__ENST00000603928.2_2_9:136890984-136891107:+|nuORF	MSMS	A375_MHC_IP_R1	1	827.7241821289062	2	827.489302	1652.96405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.31	1	145.31	144.81	145.81	0								0	0	0	0.1636	1	55705	55705		0	0	1		+		46091	26526	33561	33831	45037	45037					0.16368799912697796
RWRKLFWRLKM	11	Unmodified	_RWRKLFWRLKM_					0	0	0			REV__nc|ENSG00000149639|O94964-4|MTCL2	REV__nc|ENSG00000149639|O94964-4|MTCL2	MSMS	A375_MHC_IP_R1	1	540.6566162109375	3	540.653769	1618.93948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.89	1	137.89	137.39	138.39	0								0	0	0	0.1636	1	53060	53060		0	0	1		+		46092	19694	33562	33832	45038	45038					0.15476403714978915
RWRKRWRRWRW	11	Unmodified	_RWRKRWRRWRW_					0	0	0		ENST00000261427.9_1_4:39699814-39699901:+|nuORF	ENST00000261427.9_1_4:39699814-39699901:+|nuORF	ENST00000261427.9_1_4:39699814-39699901:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	456.9830017089844	4	457.764638	1827.02945	-0.11943	-5.4671E-05	1.2294	0.00056279	1.11	0.00050812	458.26671151171246	54.411	0.65765	54.411	54.063	54.72	0					24	12	3	0	0	0	1.0015	1	19334	19334		0.094841	0	1	1234900			46093	10280	33563	33833	45039	45039					0.14901214158408038
RWRKRWRRWRW	11	Unmodified	_RWRKRWRRWRW_					0	0	0		ENST00000261427.9_1_4:39699814-39699901:+|nuORF	ENST00000261427.9_1_4:39699814-39699901:+|nuORF	ENST00000261427.9_1_4:39699814-39699901:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	458.27923583984375	4	457.764638	1827.02945	-0.89942	-0.00041172	0.64465	0.0002951	-0.25477	-0.00011663	458.0156284142907	53.254	0.40858	54.005	53.739	54.147	0.75105					12	7	2	0	0	0	1.0015	1	20009	20009		0	0	1	2637400			46094	10280	33563	33833	45040	45040					0.14901214158408038
RWRMHKKKHKR	11	Unmodified	_RWRMHKKKHKR_					0	0	0			REV__ENSG00000205857|ENST00000382119|NANOGNB	REV__ENSG00000205857|ENST00000382119|NANOGNB	MULTI-MSMS	A375_MHC_IP_R2	2	531.3848876953125	3	530.9844	1589.93137	-0.44295	-0.0002352	1.3365	0.00070964	0.8935	0.00047444	530.9850411736252	141.85	0.96677	141.88	141.26	142.23	0.030731					29	18	2	0	0	0	0.73934	1	55435	55435		0	0	1	996220	+		46095	22588	33564	33834	45041	45041					0.1600026951819018
RWRMLIQQFRY	11	Unmodified	_RWRMLIQQFRY_					0	0	0		nc|ENSG00000090316|Q7L5Y9-3|MAEA;ENSG00000090316|ENST00000303400|MAEA;ENST00000514708.5_1_4:1309356-1332271:+|nuORF;ENST00000515766.1_1_4:1326530-1330951:+|nuORF;ENST00000503162.1_1_4:1326530-1332954:+|nuORF;ENST00000512289.5_1_4:1323768-1332954:+|nuORF;ENST00000506530.5_1_4:1326530-1332660:+|nuORF	nc|ENSG00000090316|Q7L5Y9-3|MAEA	nc|ENSG00000090316|Q7L5Y9-3|MAEA	MULTI-MSMS	A375_MHC_IP_R1	1	799.332275390625	2	798.932637	1595.85072	-0.46796	-0.00037387	0.74868	0.00059814	0.28072	0.00022428	799.4346625875553	81.228	0.81047	81.228	80.897	81.707	0					49	15	4	0	0	0	0.73809	2	29625	29625;29717		1.1933	1.1933	1	21023000			46096	1949	33565	33835	45042;45043	45042					0.07662943684658785
RWRMLIQQFRY	11	Unmodified	_RWRMLIQQFRY_					0	0	0		nc|ENSG00000090316|Q7L5Y9-3|MAEA;ENSG00000090316|ENST00000303400|MAEA;ENST00000514708.5_1_4:1309356-1332271:+|nuORF;ENST00000515766.1_1_4:1326530-1330951:+|nuORF;ENST00000503162.1_1_4:1326530-1332954:+|nuORF;ENST00000512289.5_1_4:1323768-1332954:+|nuORF;ENST00000506530.5_1_4:1326530-1332660:+|nuORF	nc|ENSG00000090316|Q7L5Y9-3|MAEA	nc|ENSG00000090316|Q7L5Y9-3|MAEA	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	798.932637	1595.85072	-0.96012	-0.00076707	1.1914	0.00095187	0.2313	0.00018479	798.9336019172683	80.474	0.81413	81.219	80.91	81.724	0.74474	-0.0045731	0.00035682	NaN	1.1933	45	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18105000			46097	1949	33565	33835							0.07662943684658785
RWRPTGAAGF	10	Unmodified	_RWRPTGAAGF_					0	0	0			REV__ENSG00000133246|ENST00000423345|PRAM1	REV__ENSG00000133246|ENST00000423345|PRAM1	MULTI-SECPEP	A375_MHC_IP_R1	1	374.27337646484375	3	373.533313	1117.57811	0.25963	9.6982E-05	-1.3127	-0.00049033	-1.0531	-0.00039335	373.53290179449937	33.216	0.4043	33.216	32.989	33.393	0					11	7	2	0	0	0	0.91932	1	10757	10757		7.9454	0	1	3026100	+		46098	18713	33566	33836	45044	45044					0.024025030058055563
RWRQLIQWENN	11	Unmodified	_RWRQLIQWENN_					0	0	0		ENSG00000129038|ENST00000261921|LOXL1	ENSG00000129038|ENST00000261921|LOXL1	ENSG00000129038|ENST00000261921|LOXL1	MULTI-MSMS	A375_MHC_IP_R1	1	772.29931640625	2	771.899848	1541.78514	-0.28046	-0.00021649	-0.68822	-0.00053124	-0.96868	-0.00074773	771.899477034575	72.144	0.4044	72.144	71.968	72.372	0					13	7	2	0	0	0	0.73672	1	26266	26266		2.4985	1.3051	1	2722700			46099	4175	33567	33837	45045	45045					0.03592245763320534
RWRQWKRGIRY	11	Unmodified	_RWRQWKRGIRY_					0	0	0			REV__ENST00000357156.6_1_20:33104228-33114094:+|nuORF	REV__ENST00000357156.6_1_20:33104228-33114094:+|nuORF	MSMS	A375_MHC_IP_R1	1	535.69970703125	3	535.639287	1603.89603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.525	1	83.525	83.025	84.025	0								0	0	0	0.16351	1	30564	30564		0.45452	0.37117	1		+		46100	23841	33568	33838	45046	45046					0.11823930262062277
RWRRHHRRQRL	11	Unmodified	_RWRRHHRRQRL_					0	0	0			REV__ENSG00000132716|ENST00000368074|DCAF8	REV__ENSG00000132716|ENST00000368074|DCAF8	MSMS	A375_MHC_IP_R2	2	828.8816528320312	2	828.985781	1655.95701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.17	1	133.34	132.84	133.84	0.16487								0	0	0	0.1636	1	52391	52391		0	0	1		+		46101	18673	33569	33839	45047	45047					0.15526880084848926
RWRRHSRKKKK	11	Unmodified	_RWRRHSRKKKK_					0	0	0			REV__OSBPL3|p.E269K|2|0.31|ENSG00000070882|chr7:24863265-24863265|C/T|missense_variant	REV__OSBPL3|p.E269K|2|0.31|ENSG00000070882|chr7:24863265-24863265|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	783.4884643554688	2	783.489834	1564.96511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.025	1	79.025	78.525	79.525	0								0	0	0	0.16358	1	28844	28844		0.30703	0.30703	1		+		46102	27704	33570	33840	45048	45048					0.20523014281593532
RWRRRVMVVRT	11	Unmodified	_RWRRRVMVVRT_					0	0	0		ENST00000415950.4_2_19:35528037-35528250:+|nuORF	ENST00000415950.4_2_19:35528037-35528250:+|nuORF	ENST00000415950.4_2_19:35528037-35528250:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	505.7023010253906	3	505.636889	1513.88884	-0.51958	-0.00026272	0.2732	0.00013814	-0.24637	-0.00012458	505.63701433807734	137.9	0.65755	137.98	137.66	138.32	0.083969					16	12	2	0	0	0	0.73924	1	54110	54110		0.094841	0	1	701820			46103	11685	33571	33841	45049	45049					0.15244874389964025
RWRRWRRRRRG	11	Unmodified	_RWRRWRRRRRG_					0	0	0		ENST00000396912.1_1_7:5085705-5085882:+|nuORF	ENST00000396912.1_1_7:5085705-5085882:+|nuORF	ENST00000396912.1_1_7:5085705-5085882:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	566.7389526367188	3	566.340457	1695.99954	-0.61431	-0.00034791	-1.2782	-0.00072392	-1.8925	-0.0010718	566.3395723334638	131.38	1.0091	131.38	131.07	132.08	0					46	19	3	0	0	0	0.73924	1	50715	50715		0.094841	0.094841	1	4333100			46104	11497	33572	33842	45050	45050					0.1793827521307776
RWRRWRRRRRG	11	Unmodified	_RWRRWRRRRRG_					0	0	0		ENST00000396912.1_1_7:5085705-5085882:+|nuORF	ENST00000396912.1_1_7:5085705-5085882:+|nuORF	ENST00000396912.1_1_7:5085705-5085882:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	566.340457	1695.99954	-0.39397	-0.00022312	-1.9493	-0.001104	-2.3433	-0.0013271	566.339294608918	131.23	1.7807	131.42	131.09	132.87	0.18953	0.019382	-0.00028339	NaN	0.094841	50	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3755600			46105	11497	33572	33842							0.1793827521307776
RWRRYRRRVSR	11	Unmodified	_RWRRYRRRVSR_					0	0	0			REV__ENST00000488071.1_1_11:64494766-64496427:-|nuORF	REV__ENST00000488071.1_1_11:64494766-64496427:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	412.1394348144531	4	412.497633	1645.96143	0.024681	1.0181E-05	-0.75061	-0.00030962	-0.72592	-0.00029944	412.4968408748112	76.115	1.4695	76.855	76.385	77.855	0.74052					52	28	3	0	0	0	1.0015	1	28759	28759		0	0	1	955420	+		46106	24593	33573	33843	45051	45051					0.1642834450774444
RWRWLRNWTHF	11	Unmodified	_RWRWLRNWTHF_					0	0	0			REV__ENST00000382162.7_1_22:31904270-32000328:+|nuORF	REV__ENST00000382162.7_1_22:31904270-32000328:+|nuORF	MSMS	A375_MHC_IP_R2	2	829.4356689453125	2	829.434193	1656.85383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.42	1	70.154	69.654	70.654	0.73421								0	0	0	0.1636	1	26307	26307		0	0	1		+		46107	22344	33574	33844	45052	45052					0.05167954853664014
RWRWSRMLRRS	11	Unmodified	_RWRWSRMLRRS_					0	0	0			REV__ENST00000414613.1_1_2:61164392-61164575:-|nuORF	REV__ENST00000414613.1_1_2:61164392-61164575:-|nuORF	MSMS	A375_MHC_IP_R1	1	530.6715087890625	3	530.628394	1588.86335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.417	1	60.417	59.917	60.917	0								0	0	0	0.16338	1	21751	21751		1.1098	0.65524	1		+		46108	24508	33575	33845	45053	45053					0.09247399867535933
RWRYRCWERRF	11	Unmodified	_RWRYRCWERRF_					0	0	0		ENST00000328599.4_1_8:125463328-125463391:+|nuORF	ENST00000328599.4_1_8:125463328-125463391:+|nuORF	ENST00000328599.4_1_8:125463328-125463391:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	857.5433959960938	2	857.436409	1712.85827	-0.6192	-0.00053092	-3.1949	-0.0027394	-3.8141	-0.0032704	857.9354053824649	124.12	0.15195	124.45	124.34	124.5	0.32969					4	2	2	0	0	0	0.73902	1	47916	47916		0.30703	0.30703	1	6227000			46109	10749	33576	33846	45054	45054					0.030350960048963316
RWRYRCWERRF	11	Unmodified	_RWRYRCWERRF_					0	0	0		ENST00000328599.4_1_8:125463328-125463391:+|nuORF	ENST00000328599.4_1_8:125463328-125463391:+|nuORF	ENST00000328599.4_1_8:125463328-125463391:+|nuORF	MSMS	A375_MHC_IP_R2	2	857.2757568359375	2	857.436409	1712.85827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.79	1	125.12	124.62	125.62	0.32969								0	0	0	0.16354	1	48384	48384		0.30703	0.30703	1				46110	10749	33576	33846	45055	45055					0.030350960048963316
RWSLSPKRCR	10	Unmodified	_RWSLSPKRCR_					0	0	0			REV__chr17:16431850-16433574|101|13.39|0.14|6.54|+|1|TRPV2,TRPV2|1	REV__chr17:16431850-16433574|101|13.39|0.14|6.54|+|1|TRPV2,TRPV2|1	MULTI-MSMS	A375_MHC_IP_R2	2	430.630615234375	3	430.240024	1287.69824	-0.29052	-0.00012499	-1.0279	-0.00044223	-1.3184	-0.00056722	430.23946933565105	40.333	0.66108	41.108	40.828	41.489	0.77451					19	12	2	0	0	0	0.7086	1	14877	14877		8.4443	0.15787	1	2205900	+		46111	15721	33577	33847	45056	45056					0.06590168007915054
RWSQLAQMFVL	11	Unmodified	_RWSQLAQMFVL_					0	0	0			REV__nc|ENSG00000125726|P32970-2|CD70	REV__nc|ENSG00000125726|P32970-2|CD70	MULTI-MSMS	A375_MHC_IP_R2	2	460.6189880371094	3	460.248185	1377.72273	-0.61081	-0.00028112	1.8336	0.00084393	1.2228	0.0005628	460.58330142178096	35.647	0.45563	36.41	36.183	36.638	0.76338					13	8	2	0	0	0	0.73658	1	12925	12925		2.6312	0.19645	1	1673400	+		46112	27204	33578	33848	45057	45057					0.048973833707577796
RWSRRQHVHAF	11	Unmodified	_RWSRRQHVHAF_					0	0	0		ENST00000289431.9_1_20:48525041-48531957:-|nuORF	ENST00000289431.9_1_20:48525041-48531957:-|nuORF	ENST00000289431.9_1_20:48525041-48531957:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	740.795166015625	2	740.395067	1478.77558	-0.79409	-0.00058794	0.87001	0.00064415	0.07592	5.6211E-05	740.3952912158027	133.51	0.76428	133.51	133.2	133.97	0					27	14	3	0	0	0	0.73694	1	51525	51525		2.2828	0.80087	1	3419800			46113	10465	33579	33849	45058	45058					0.055345222684536566
RWSTKESPRW	10	Unmodified	_RWSTKESPRW_					0	0	0		ENST00000519675.1_1_8:105521165-105601125:-|nuORF;nc|ENSG00000147650|Q9Y561-2|LRP12;ENSG00000147650|ENST00000276654|LRP12	ENST00000519675.1_1_8:105521165-105601125:-|nuORF	ENST00000519675.1_1_8:105521165-105601125:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	445.2984924316406	3	444.898432	1331.67347	-0.25138	-0.00011184	-3.5049	-0.0015593	-3.7563	-0.0016712	444.8984378634374	27.927	0.95803	27.927	27.432	28.39	0					51	18	5	0	0	0	0.027416	1	8570	8570		96.24	58.989	1	32321000			46114	5698	33580	33850	45059	45059					0.020898114061765227
RWSTKESPRW	10	Unmodified	_RWSTKESPRW_					0	0	0		ENST00000519675.1_1_8:105521165-105601125:-|nuORF;nc|ENSG00000147650|Q9Y561-2|LRP12;ENSG00000147650|ENST00000276654|LRP12	ENST00000519675.1_1_8:105521165-105601125:-|nuORF	ENST00000519675.1_1_8:105521165-105601125:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	445.2984313964844	3	444.898432	1331.67347	-0.34993	-0.00015568	-1.4358	-0.00063878	-1.7857	-0.00079446	444.8984695232111	27.231	0.8669	27.91	27.484	28.351	0.67857					42	16	5	0	0	0	0.24759	1	9285	9285		72.187	36.191	1	31769000			46115	5698	33580	33850	45060	45060					0.020898114061765227
RWSWWWLKWFW	11	Unmodified	_RWSWWWLKWFW_					0	0	0			REV__chr12:54282611-54283827|472|64.71|0.0|22.63|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54282611-54283827|472|64.71|0.0|22.63|+|1|HNRNPA1,HNRNPA1|1	MSMS	A375_MHC_IP_R2	2	884.0128784179688	2	883.940788	1765.86702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.07	1	116.73	116.23	117.23	0.66948								0	0	0	0.16354	1	43772	43772		0.30703	0.30703	1		+		46116	15689	33581	33851	45061	45061					0.014723929130468605
RWTIEHTICNS	11	Unmodified	_RWTIEHTICNS_					0	0	0		ENSG00000253251|ENST00000510585|SHLD3	ENSG00000253251|ENST00000510585|SHLD3	ENSG00000253251|ENST00000510585|SHLD3	MULTI-MSMS	A375_MHC_IP_R1	1	454.2878723144531	3	453.887316	1358.64012	-0.092258	-4.1875E-05	0.051857	2.3537E-05	-0.040401	-1.8338E-05	453.8878668666132	51.416	0.76048	51.416	51.068	51.829	0					34	14	4	0	0	0	0.7362	1	18246	18246		1.2148	0	1	2739400			46117	9856	33582	33852	45062	45062					-0.02485558427997603
RWTRHRARGR	10	Unmodified	_RWTRHRARGR_					0	0	0		ENST00000555857.1_1_12:57482878-57485042:+|nuORF	ENST00000555857.1_1_12:57482878-57485042:+|nuORF	ENST00000555857.1_1_12:57482878-57485042:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	676.7871704101562	2	676.387577	1350.7606	-0.62347	-0.0004217	-0.091374	-6.1804E-05	-0.71484	-0.00048351	676.3874232043169	132.79	0.81285	132.95	132.74	133.55	0.16487					24	15	2	0	0	0	0.72014	1	52240	52240		3.2813	3.2813	1	12786000			46118	13434	33583	33853	45063	45063					0.09925075191085853
RWTRHRARGR	10	Unmodified	_RWTRHRARGR_					0	0	0		ENST00000555857.1_1_12:57482878-57485042:+|nuORF	ENST00000555857.1_1_12:57482878-57485042:+|nuORF	ENST00000555857.1_1_12:57482878-57485042:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	676.387577	1350.7606	-0.62347	-0.0004217	-0.091374	-6.1804E-05	-0.71484	-0.00048351	676.3874232043169	132.79	0.81285	132.95	132.74	133.55	0.16487	0.042108	-0.00015052	NaN	3.2813	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12786000			46119	13434	33583	33853							0.09925075191085853
RWVRALNF	8	Unmodified	_RWVRALNF_					0	0	0			REV__ENST00000581241.5_1_17:80206597-80211051:-|nuORF	REV__ENST00000581241.5_1_17:80206597-80211051:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	531.702392578125	2	531.303793	1060.59303	-0.56335	-0.00029931	-0.78859	-0.00041898	-1.3519	-0.00071829	531.3032282381416	89.371	0.65596	90.103	89.786	90.442	0.7318					21	12	2	0	0	0	0.78043	1	34027	34027		40.449	0	1	2318900	+		46120	26349	33584	33854	45064	45064					0.06515994873780073
RWWFRRLFLIF	11	Unmodified	_RWWFRRLFLIF_					0	0	0		ENST00000281830.3_1_2:223918801-223918864:+|nuORF	ENST00000281830.3_1_2:223918801-223918864:+|nuORF	ENST00000281830.3_1_2:223918801-223918864:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	547.7169189453125	3	547.317262	1638.92996	-0.47226	-0.00025848	-0.079219	-4.3358E-05	-0.55148	-0.00030183	547.3171679389222	56.991	0.45864	56.991	56.804	57.263	0					20	8	3	0	0	0	0.73934	1	20451	20451		0	0	1	4001000			46121	10431	33585	33855	45065	45065					0.13604958701102987
RWWFRRLFLIF	11	Unmodified	_RWWFRRLFLIF_					0	0	0		ENST00000281830.3_1_2:223918801-223918864:+|nuORF	ENST00000281830.3_1_2:223918801-223918864:+|nuORF	ENST00000281830.3_1_2:223918801-223918864:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	547.6561889648438	3	547.317262	1638.92996	-1.0618	-0.00058114	0.32711	0.00017903	-0.73469	-0.00040211	547.3173787134141	56.236	0.51043	56.986	56.745	57.255	0.75014					26	9	4	0	0	0	0.73934	1	21159	21159		0	0	1	5304800			46122	10431	33585	33855	45066	45066					0.13604958701102987
RWWKYMILRLI	11	Unmodified	_RWWKYMILRLI_					0	0	0		SLC35F1|p.G136R|1|0.31|ENSG00000196376|chr6:118235565-118235565|G/A|missense_variant	SLC35F1|p.G136R|1|0.31|ENSG00000196376|chr6:118235565-118235565|G/A|missense_variant	SLC35F1|p.G136R|1|0.31|ENSG00000196376|chr6:118235565-118235565|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	526.6043090820312	3	526.642758	1576.90644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.355	1	77.355	76.855	77.855	0								0	0	0	0.1635	1	28219	28219		0.50596	0.41111	1				46123	29183	33586	33856	45067	45067					0.141067768722678
RWWKYMILRLI	11	Unmodified	_RWWKYMILRLI_					0	0	0		SLC35F1|p.G136R|1|0.31|ENSG00000196376|chr6:118235565-118235565|G/A|missense_variant	SLC35F1|p.G136R|1|0.31|ENSG00000196376|chr6:118235565-118235565|G/A|missense_variant	SLC35F1|p.G136R|1|0.31|ENSG00000196376|chr6:118235565-118235565|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	526.6381225585938	3	526.642758	1576.90644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.309	1	91.041	90.541	91.541	0.7318								0	0	0	0.16332	1	34361	34361		1.4551	1.3603	1				46124	29183	33586	33856	45068	45068					0.141067768722678
RWWRRPRRPRR	11	Unmodified	_RWWRRPRRPRR_					0	0	0			REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF	REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF	MSMS	A375_MHC_IP_R1	1	839.8977661132812	2	839.498524	1676.9825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.29	1	145.29	144.79	145.79	0								0	0	0	0.1636	1	55698	55698		0	0	1		+		46125	24056	33587	33857	45069	45069					0.171083546072623
RWWRRWAVRQL	11	Unmodified	_RWWRRWAVRQL_					0	0	0			REV__ENST00000497184.5_1_7:44091401-44091476:+|nuORF	REV__ENST00000497184.5_1_7:44091401-44091476:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	537.6839599609375	3	538.307649	1611.90112	-0.70064	-0.00037716	-0.10746	-5.7845E-05	-0.8081	-0.000435	538.3074043269226	86.137	0.30556	86.87	86.693	86.998	0.73301					8	5	2	0	0	0	1.0015	1	32788	32788		0.094841	0	1	1133300	+		46126	25468	33588	33858	45070	45070					0.11964234124684481
RWWRSTRTSSR	11	Unmodified	_RWWRSTRTSSR_					0	0	0		ENST00000379561.5_1_13:41240138-41240633:-|nuORF	ENST00000379561.5_1_13:41240138-41240633:-|nuORF	ENST00000379561.5_1_13:41240138-41240633:-|nuORF	MSMS	A375_MHC_IP_R1	1	493.69256591796875	3	493.595635	1477.76508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.09	1	142.09	141.59	142.59	0								0	0	0	0.16337	1	54523	54523		0.40827	0	1				46127	11338	33589	33859	45071	45071					0.04530494823347908
RWWRVWLEKR	10	Unmodified	_RWWRVWLEKR_					0	0	0		ENST00000519528.1_1_8:103299768-103305927:-|nuORF	ENST00000519528.1_1_8:103299768-103305927:-|nuORF	ENST00000519528.1_1_8:103299768-103305927:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	505.7067565917969	3	505.621233	1513.84187	-0.51808	-0.00026195	-1.1919	-0.00060264	-1.71	-0.0008646	505.6204668634475	149.19	1.0656	149.21	148.39	149.46	0.018707					23	21	2	0	0	0	0.95064	1	57702	57702		0.12286	0.028024	1	74111			46128	12979	33590	33860	45072	45072					0.10550338110488156
RWWVADSNV	9	Unmodified	_RWWVADSNV_					0	0	0		ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	MSMS	A375_MHC_IP_R2	2	566.6719970703125	2	566.780348	1131.54614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.46	1	129.7	129.2	130.2	0.23946								0	0	0	0.15486	1	50877	50877		7.2892	0.56607	1				46129	1443	33591	33861	45073	45073					-0.014369094680205308
RWWVRVFRPFE	11	Unmodified	_RWWVRVFRPFE_					0	0	0			REV__ENST00000348624.4_1_7:4815294-4820850:+|nuORF	REV__ENST00000348624.4_1_7:4815294-4820850:+|nuORF	MSMS	A375_MHC_IP_R2	2	789.4230346679688	2	789.428045	1576.84154	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.3	1	127.57	127.07	128.07	0.26593								0	0	0	0.16339	1	49898	49898		1.0715	0.72083	1		+		46130	23787	33592	33862	45074	45074					0.07618918390608087
RWWYLKITFYL	11	Unmodified	_RWWYLKITFYL_					0	0	0			REV__ENSG00000145428|ENST00000347063|RNF175	REV__ENSG00000145428|ENST00000347063|RNF175	MULTI-MSMS	A375_MHC_IP_R2	2	530.6347045898438	3	530.294012	1587.86021	-0.74961	-0.00039751	1.1935	0.00063292	0.44392	0.00023541	530.2952211063406	72.447	0.7588	73.182	72.721	73.48	0.7354					25	14	3	0	0	0	0.73881	1	27592	27592		0.50596	0.41111	1	1923200	+		46131	19473	33593	33863	45075	45075					0.0897903524182766
RWYHRKRLTDK	11	Unmodified	_RWYHRKRLTDK_					0	0	0			REV__ENSG00000184304|ENST00000331968|PRKD1	REV__ENSG00000184304|ENST00000331968|PRKD1	MULTI-SECPEP	A375_MHC_IP_R2	2	390.29718017578125	4	390.473292	1557.86406	-0.1201	-4.6894E-05	-0.70699	-0.00027606	-0.82709	-0.00032296	390.4729779132486	44.301	0.4562	45.07	44.883	45.34	0.7691					17	6	3	0	0	0	1.0011	1	16475	16475		1.3296	0.87513	1	10452000	+		46132	21806	33594	33864	45076	45076					0.10744517788248231
RWYSNFDYLRT	11	Unmodified	_RWYSNFDYLRT_					0	0	0			REV__ENST00000324799.4_1_X:148606549-148607579:+|nuORF	REV__ENST00000324799.4_1_X:148606549-148607579:+|nuORF	MSMS	A375_MHC_IP_R1	1	507.6319274902344	3	507.58088	1519.72081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.618	1	77.618	77.118	78.118	0								0	0	0	0.1628	1	28318	28318		4.1166	0.27072	1		+		46133	16195	33595	33865	45077	45077					-0.01825954113496664
RYADRVKEL	9	Unmodified	_RYADRVKEL_					0	0	0		nc|ENSG00000186638|Q5T7B8-4|KIF24;nc|ENSG00000186638|Q5T7B8-2|KIF24;ENSG00000186638|ENST00000402558|KIF24;nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C	nc|ENSG00000186638|Q5T7B8-4|KIF24;nc|ENSG00000142945|Q99661-2|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	MULTI-SECPEP	A375_MHC_IP_R2	2	384.28369140625	3	383.884012	1148.63021	-0.42955	-0.0001649	-0.004194	-1.61E-06	-0.43375	-0.00016651	383.8840096965472	23.223	0.70976	23.853	23.623	24.333	0.63014					25	13	3	0	0	0	0.14438	1	7439	7439		55.467	23.43	1	12743000			46134	8767;5338	33596	33866	45078	45078					0.061836216289066215
RYARRRYY	8	Unmodified	_RYARRRYY_					0	0	0		ENSG00000176248|ENST00000323927|ANAPC2;nc|ENSG00000176248|Q9UJX6-2|ANAPC2	ENSG00000176248|ENST00000323927|ANAPC2	ENSG00000176248|ENST00000323927|ANAPC2	MSMS	A375_MHC_IP_R1	1	401.9315185546875	3	401.887979	1202.64211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.427	1	22.427	21.927	22.927	0								0	0	0	0.16876	1	6020	6020		3.9444	0.068064	1				46135	8011	33597	33867	45079	45079					0.04889283162742686
RYAWIKRQL	9	Unmodified	_RYAWIKRQL_					0	0	0		ENSG00000141252|ENST00000437048|VPS53;VPS53|p.Y508*|1|0.5|ENSG00000141252|chr17:562535-562535|G/-|frameshift_variant;nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENST00000576149.5_1_17:503295-579448:-|nuORF	ENSG00000141252|ENST00000437048|VPS53	ENSG00000141252|ENST00000437048|VPS53	MULTI-SECPEP	A375_MHC_IP_R1	1	412.459716796875	3	411.912013	1232.71421	0.34795	0.00014333	-0.29298	-0.00012068	0.054975	2.2645E-05	411.91191171454506	37.456	0.35771	37.456	37.249	37.607	0					11	6	2	0	0	0	0.61758	1	12631	12631		27.223	19.614	1	1793500			46136	5222	33598	33868	45080	45080					0.10716197516467219
RYAWIKRQL	9	Unmodified	_RYAWIKRQL_					0	0	0		ENSG00000141252|ENST00000437048|VPS53;VPS53|p.Y508*|1|0.5|ENSG00000141252|chr17:562535-562535|G/-|frameshift_variant;nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENST00000576149.5_1_17:503295-579448:-|nuORF	ENSG00000141252|ENST00000437048|VPS53	ENSG00000141252|ENST00000437048|VPS53	MULTI-MATCH	A375_MHC_IP_R2	2		3	411.912013	1232.71421	-0.13653	-5.6238E-05	-0.072734	-2.996E-05	-0.20926	-8.6198E-05	412.2462614080309	36.286	0.40791	37.057	36.85	37.258	0.7709	-0.19919	0.00010237	NaN	27.223	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2114200			46137	5222	33598	33868							0.10716197516467219
RYCKDSKEQ	9	Unmodified	_RYCKDSKEQ_					0	0	0		ENST00000426475.1_1_2:171627694-171633924:+|nuORF	ENST00000426475.1_1_2:171627694-171633924:+|nuORF	ENST00000426475.1_1_2:171627694-171633924:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	579.6793212890625	2	578.774405	1155.53426	-0.22206	-0.00012852	1.7044	0.00098644	1.4823	0.00085791	579.2777002229096	67.515	0.50981	68.252	68.001	68.511	0.73631					23	9	3	0	0	0	0.53367	1	25616	25616		18.146	4.2403	1	4294700			46138	11806	33599	33869	45081	45081					-0.037288942734903685
RYDFYFYFVFL	11	Unmodified	_RYDFYFYFVFL_					0	0	0			REV__ENST00000338244.5_1_20:4833170-4833257:-|nuORF	REV__ENST00000338244.5_1_20:4833170-4833257:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	791.28564453125	2	790.384645	1578.75474	-0.78556	-0.00062089	-0.20129	-0.00015909	-0.98685	-0.00077999	790.8861018713172	142.28	0.30464	142.31	142.13	142.43	0.030731					9	5	3	0	0	0	0.73934	1	55649	55649		0	0	1	2197200	+		46139	23698	33600	33870	45082	45082					-0.011489256744653176
RYDPYTQRIE	10	Unmodified	_RYDPYTQRIE_					0	0	0		ENSG00000171759|ENST00000553106|PAH	ENSG00000171759|ENST00000553106|PAH	ENSG00000171759|ENST00000553106|PAH	MULTI-MSMS	A375_MHC_IP_R2	2	447.9577941894531	3	447.557964	1339.65206	-0.51442	-0.00023023	-0.13032	-5.8325E-05	-0.64474	-0.00028856	447.557859034655	54.744	0.50944	55.495	55.219	55.729	0.75075					26	9	4	0	0	0	0.70312	1	20643	20643		10.899	2.1472	1	5569600			46140	7635	33601	33871	45083	45083					-0.004176184132347771
RYEGFLSRL	9	Unmodified	_RYEGFLSRL_					0	0	0		nc|ENSG00000142513|Q9BZG2-2|ACP4	nc|ENSG00000142513|Q9BZG2-2|ACP4	nc|ENSG00000142513|Q9BZG2-2|ACP4	MULTI-MSMS	A375_MHC_IP_R1	1	382.27264404296875	3	380.876857	1139.60874	0.33244	0.00012662	0.61998	0.00023614	0.95242	0.00036275	380.8763582042698	31.957	0.86889	31.957	31.514	32.383	0					52	16	5	0	0	0	0.60101	1	10278	10278		10.151	0	1	19126000			46141	14651	33602	33872	45084	45084					0.04452236600195647
RYFHVAFVIFI	11	Unmodified	_RYFHVAFVIFI_					0	0	0			REV__nc|ENSG00000276045|Q96D31-2|ORAI1	REV__nc|ENSG00000276045|Q96D31-2|ORAI1	MULTI-MSMS	A375_MHC_IP_R1	1	706.797607421875	2	706.39789	1410.78123	-0.8633	-0.00060983	0.4062	0.00028694	-0.4571	-0.0003229	706.3981947318176	133.84	1.0151	133.84	133.41	134.42	0					46	19	4	0	0	0	0.73781	1	51564	51564		0.35063	0	1	6689000	+		46142	22966	33603	33873	45085	45085					0.09226808007565523
RYFLWHTYRWL	11	Unmodified	_RYFLWHTYRWL_					0	0	0		nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	MSMS	A375_MHC_IP_R1	1	547.6884765625	3	547.62101	1639.8412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.679	1	55.679	55.179	56.179	0								0	0	0	0.16355	1	19921	19921		0.073264	0	1				46143	3274	33604	33874	45086	45086					0.04687498670796231
RYFLWHTYRWL	11	Unmodified	_RYFLWHTYRWL_					0	0	0		nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	MSMS	A375_MHC_IP_R1	1	820.92578125	2	820.927877	1639.8412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.63	1	144.63	144.13	145.13	0								0	0	0	0.1636	1	55459	55459		0	0	1				46144	3274	33604	33874	45087	45087					0.04687498670796231
RYFYKQKRTKR	11	Unmodified	_RYFYKQKRTKR_					0	0	0			REV__ENST00000416636.2_1_7:23624683-23625604:-|nuORF	REV__ENST00000416636.2_1_7:23624683-23625604:-|nuORF	MSMS	A375_MHC_IP_R1	1	787.4606323242188	2	787.457333	1572.90011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.944	1	69.944	69.444	70.444	0								0	0	0	0.16358	1	25388	25388		0.30703	0.30703	1		+		46145	21406	33605	33875	45088	45088					0.13657974965076392
RYFYRQLLLFY	11	Unmodified	_RYFYRQLLLFY_					0	0	0		nc|ENSG00000164113|Q96M93-3|ADAD1;ENSG00000164113|ENST00000296513|ADAD1	nc|ENSG00000164113|Q96M93-3|ADAD1	nc|ENSG00000164113|Q96M93-3|ADAD1	MULTI-MSMS	A375_MHC_IP_R2	2	528.3576049804688	3	527.9574	1580.85037	-0.4572	-0.00024138	0.11291	5.9614E-05	-0.34428	-0.00018177	527.9576671091276	63.27	0.55842	64.01	63.734	64.292	0.74032					22	10	3	0	0	0	0.73779	1	23997	23997		0.50596	0.051438	1	2476800			46146	6782	33606	33876	45089	45089					0.08317847236480702
RYFYRQLLLFY	11	Unmodified	_RYFYRQLLLFY_					0	0	0		nc|ENSG00000164113|Q96M93-3|ADAD1;ENSG00000164113|ENST00000296513|ADAD1	nc|ENSG00000164113|Q96M93-3|ADAD1	nc|ENSG00000164113|Q96M93-3|ADAD1	MULTI-SECPEP	A375_MHC_IP_R2	2	528.1458129882812	3	527.9574	1580.85037	-0.75461	-0.0003984	-1.316	-0.00069477	-2.0706	-0.0010932	528.2906174302027	49.839	0.66081	50.593	50.244	50.904	0.75406					17	12	2	0	0	0	1.0014	1	18674	18674		0.50596	0.41111	1	1853500			46147	6782	33606	33876	45090	45090					0.08317847236480702
RYHPVASQVE	10	Unmodified	_RYHPVASQVE_					0	0	0		ENST00000324344.8_1_16:20871662-20873796:-|nuORF	ENST00000324344.8_1_16:20871662-20873796:-|nuORF	ENST00000324344.8_1_16:20871662-20873796:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	395.9400329589844	3	395.871883	1184.59382	-0.14923	-5.9074E-05	-1.3401	-0.00053051	-1.4893	-0.00058958	395.87133571854594	32.182	0.50911	32.919	32.704	33.213	0.73691					16	9	2	0	0	0	0.71455	1	11528	11528		5.7834	0.38072	1	5548200			46148	10715	33607	33877	45091	45091					0.008907447321689688
RYHSIQASHLA	11	Unmodified	_RYHSIQASHLA_					0	0	0			REV__ENST00000557431.5_1_14:78227018-78227249:+|nuORF	REV__ENST00000557431.5_1_14:78227018-78227249:+|nuORF	MSMS	A375_MHC_IP_R2	2	641.9195556640625	2	641.836185	1281.65782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.81	1	124.14	123.64	124.64	0.32969								0	0	0	0.15488	1	47696	47696		17.443	3.0373	1		+		46149	26124	33608	33878	45092	45092					0.028255248891355222
RYIKNPRI	8	Unmodified	_RYIKNPRI_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-SECPEP	A375_MHC_IP_R2	2	353.27288818359375	3	353.885576	1058.6349	-0.25449	-9.0059E-05	-1.1261	-0.0003985	-1.3806	-0.00048856	353.88502237222923	31.353	0.4101	32.072	31.872	32.282	0.71857					10	7	2	0	0	0	0.972	1	11052	11052		6.2058	2.9245	1	876050			46150	6668	33609	33879	45093	45093					0.10792550562291581
RYIKNPRIV	9	Unmodified	_RYIKNPRIV_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-SECPEP	A375_MHC_IP_R1	1	387.5809631347656	3	386.90838	1157.70331	0.060238	2.3307E-05	0.2957	0.00011441	0.35593	0.00013771	386.9084342311228	25.709	0.55729	25.709	25.46	26.017	0					12	10	2	0	0	0	0.69179	1	7597	7597		21.59	14.488	1	2194300			46151	6668	33610	33880	45094	45094					0.13076795142137598
RYIKNPRIV	9	Unmodified	_RYIKNPRIV_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	A375_MHC_IP_R2	2	387.3082275390625	3	386.90838	1157.70331	-0.54807	-0.00021205	0.091576	3.5432E-05	-0.4565	-0.00017662	386.90851023951814	24.898	0.4574	25.542	25.364	25.822	0.64368					11	8	2	0	0	0	0.70411	1	8291	8291		6.6304	1.2277	1	4299800			46152	6668	33610	33880	45095	45095					0.13076795142137598
RYIRPDLRKKT	11	Unmodified	_RYIRPDLRKKT_					0	0	0			REV__ENSG00000181418|ENST00000421952|DDN	REV__ENSG00000181418|ENST00000421952|DDN	MSMS	A375_MHC_IP_R2	2	723.6591186523438	2	723.438609	1444.86267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.39	1	146.41	145.91	146.91	0.019913								0	0	0	0.1636	1	57017	57017		0	0	1		+		46153	21649	33611	33881	45096	45096					0.15802883699439008
RYKFDENKY	9	Unmodified	_RYKFDENKY_					0	0	0			REV__tr|U7SJ54|U7SJ54_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02095PE=3SV=1	REV__tr|U7SJ54|U7SJ54_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02095PE=3SV=1	MSMS	A375_MHC_IP_R1	1	421.59991455078125	3	421.543655	1261.60914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.23	1	38.23	37.73	38.73	0								0	0	0	0.15386	1	12950	12950		15.248	1.0303	1		+		46154	28225	33612	33882	45097	45097					-0.011203884706219469
RYKKKKKRRYQ	11	Unmodified	_RYKKKKKRRYQ_					0	0	0		ENSG00000166012|ENST00000448108|TAF1D	ENSG00000166012|ENST00000448108|TAF1D	ENSG00000166012|ENST00000448108|TAF1D	MSMS	A375_MHC_IP_R1	1	528.0641479492188	3	527.998592	1580.97395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.45	1	147.45	146.95	147.95	0								0	0	0	0.1636	1	56347	56347		0	0	1				46155	7016	33613	33883	45098	45098					0.20669943127450097
RYKMKDLIRFK	11	Unmodified	_RYKMKDLIRFK_					0	0	0		nc|ENSG00000053524|Q86YR7-4|MCF2L2;ENSG00000053524|ENST00000328913|MCF2L2;ENST00000488149.5_1_3:182910742-182941939:-|nuORF	nc|ENSG00000053524|Q86YR7-4|MCF2L2	nc|ENSG00000053524|Q86YR7-4|MCF2L2	MULTI-MSMS	A375_MHC_IP_R2	2	500.36175537109375	3	499.962268	1496.86497	-0.48454	-0.00024225	-0.52278	-0.00026137	-1.0073	-0.00050362	499.9617913567176	133.38	0.7608	133.54	133.2	133.96	0.16487					27	14	2	0	0	0	0.73891	1	52490	52490		0.40827	0.40827	1	4120000			46156	1249	33614	33884	45099	45099					0.13641596112938714
RYKNWLKLKRH	11	Unmodified	_RYKNWLKLKRH_					0	0	0			REV__ENST00000575171.1_1_17:729096-882585:-|nuORF	REV__ENST00000575171.1_1_17:729096-882585:-|nuORF	MSMS	A375_MHC_IP_R2	2	771.2132568359375	2	771.462419	1540.91028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.31	1	116	115.5	116.5	0.68999								0	0	0	0.16353	1	43464	43464		0.35063	0	1		+		46157	20785	33615	33885	45100	45100					0.1614658269031679
RYKRRQHLFLA	11	Unmodified	_RYKRRQHLFLA_					0	0	0			REV__ENST00000541233.1_1_12:6554564-6560555:+|nuORF	REV__ENST00000541233.1_1_12:6554564-6560555:+|nuORF	MSMS	A375_MHC_IP_R2	2	496.6932373046875	3	496.628388	1486.86333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.96	1	141	140.5	141.5	0.04216								0	0	0	0.16353	1	55154	55154		0.094841	0.011491	1		+		46158	19141	33616	33886	45101	45101					0.13937723139224545
RYKYRRWRQWL	11	Unmodified	_RYKYRRWRQWL_					0	0	0			REV__SETD9|p.K193Tfs*2|1|0.07|ENSG00000155542|chr5:56913120-56913121|-/ACATG|frameshift_variant	REV__SETD9|p.K193Tfs*2|1|0.07|ENSG00000155542|chr5:56913120-56913121|-/ACATG|frameshift_variant	MSMS	A375_MHC_IP_R2	2	570.819580078125	3	570.986575	1709.9379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.53	1	116.22	115.72	116.72	0.68999								0	0	0	0.1636	1	43552	43552		0	0	1		+		46159	19928	33617	33887	45102	45102					0.11132485950588489
RYLAKKKT	8	Unmodified	_RYLAKKKT_					0	0	0		nc|ENSG00000075826|Q9NQW1-5|SEC31B;ENSG00000075826|ENST00000370345|SEC31B;SEC31B|p.S620F|1|0.32|ENSG00000075826|chr10:100498033-100498033|G/A|missense_variant;ENST00000484848.5_1_10:102255105-102258991:-|nuORF	nc|ENSG00000075826|Q9NQW1-5|SEC31B	nc|ENSG00000075826|Q9NQW1-5|SEC31B	MULTI-MSMS	A375_MHC_IP_R1	1	504.720947265625	2	504.321651	1006.62875	-0.72805	-0.00036717	0.62105	0.00031321	-0.107	-5.3964E-05	504.32210302627607	149.81	2.0732	149.81	147.93	150	0					158	65	3	0	0	0	0.77842	1	57199	57199		0.69038	0.088878	1	562450			46160	1623	33618	33888	45103	45103					0.12570032330802405
RYLESARCY	9	Unmodified	_RYLESARCY_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MSMS	A375_MHC_IP_R2	2	387.4451904296875	3	387.522086	1159.54443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.728	1	41.503	41.003	42.003	0.77451								0	0	0	0.15486	1	15090	15090		4.897	1.3005	1				46161	2487	33619	33889	45104	45104					-0.02896286548275384
RYLQTLTTI	9	Unmodified	_RYLQTLTTI_					0	0	0		ENSG00000148175|ENST00000286713|STOM;nc|ENSG00000148175|P27105-2|STOM	ENSG00000148175|ENST00000286713|STOM	ENSG00000148175|ENST00000286713|STOM	MULTI-SECPEP	A375_MHC_IP_R1	1	555.1104125976562	2	554.821681	1107.62881	-0.34943	-0.00019387	0.2192	0.00012162	-0.13023	-7.2253E-05	554.8217051576839	72.09	0.55673	72.09	71.815	72.372	0					23	10	3	0	0	0	0.11711	1	26201	26201		69.105	12.928	1	8777000			46162	5720	33620	33890	45105	45105					0.0792998754011478
RYLQTLTTI	9	Unmodified	_RYLQTLTTI_					0	0	0		ENSG00000148175|ENST00000286713|STOM;nc|ENSG00000148175|P27105-2|STOM	ENSG00000148175|ENST00000286713|STOM	ENSG00000148175|ENST00000286713|STOM	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1094360351562	2	554.821681	1107.62881	-0.96094	-0.00053315	0.033452	1.856E-05	-0.92749	-0.00051459	554.8217133618501	71.194	0.709	71.928	71.605	72.314	0.73421					24	13	3	0	0	0	0.11711	1	27025	27025		69.105	12.928	1	8041000			46163	5720	33620	33890	45106	45106					0.0792998754011478
RYLRPLSRS	9	Unmodified	_RYLRPLSRS_					0	0	0			REV__nc|ENSG00000144824|Q86SQ0-2|PHLDB2	REV__nc|ENSG00000144824|Q86SQ0-2|PHLDB2	MULTI-MSMS	A375_MHC_IP_R1	1	574.394775390625	2	574.338364	1146.66217	-0.44876	-0.00025774	-1.462	-0.0008397	-1.9108	-0.0010974	574.3376436251386	131.53	0.40469	131.53	131.38	131.78	0					13	7	2	0	0	0	0.73415	1	50693	50693		3.9444	0.66309	1	3592600	+		46164	19449	33621	33891	45107	45107					0.09471034102671183
RYLRRFREMKP	11	Unmodified	_RYLRRFREMKP_					0	0	0		nc|ENSG00000126562|Q96J92-2|WNK4	nc|ENSG00000126562|Q96J92-2|WNK4	nc|ENSG00000126562|Q96J92-2|WNK4	MULTI-MSMS	A375_MHC_IP_R1	1	777.3399047851562	2	776.438086	1550.86162	-0.73831	-0.00057325	0.80906	0.00062819	0.070749	5.4933E-05	776.4383014181726	134.44	0.96269	134.44	134.12	135.08	0					42	18	3	0	0	0	0.73822	1	51824	51824		1.0715	0.76443	1	7211100			46165	14583	33622	33892	45108	45108					0.10822346058944277
RYLTYRYFPRR	11	Unmodified	_RYLTYRYFPRR_					0	0	0		ENSG00000174792|ENST00000311623|ODAPH	ENSG00000174792|ENST00000311623|ODAPH	ENSG00000174792|ENST00000311623|ODAPH	MULTI-MSMS	A375_MHC_IP_R1	1	531.6708374023438	3	530.959915	1589.85791	-0.55253	-0.00029337	-0.27391	-0.00014543	-0.82643	-0.0004388	530.9594954827708	55.661	1.4223	55.661	55.177	56.599	0					97	27	5	0	0	0	0.73902	2	19775	19775;19800		0.08335	0	1	303620000			46166	7902	33623	33893	45109;45110	45109					0.08657999556703544
RYLYHQRWLWS	11	Unmodified	_RYLYHQRWLWS_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;nc|ENSG00000198198|Q5T011-4|SZT2;SZT2|p.T1044Ifs*3|1|0.17|ENSG00000198198|chr1:43426802-43426802|C/-|frameshift_variant	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MSMS	A375_MHC_IP_R2	2	536.6117553710938	3	536.612515	1606.81572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.911	1	70.645	70.145	71.145	0.73421								0	0	0	0.16352	1	26501	26501		0.40827	0	1				46167	9241	33624	33894	45111	45111					0.03658024148353434
RYMQIYNHQL	10	Unmodified	_RYMQIYNHQL_					0	0	0			REV__ENSG00000107816|ENST00000454422|LZTS2	REV__ENSG00000107816|ENST00000454422|LZTS2	MULTI-SECPEP	A375_MHC_IP_R2	2	456.63031005859375	3	455.895923	1364.66594	-0.22178	-0.00010111	0.54328	0.00024768	0.3215	0.00014657	456.2303313146733	131.61	1.3706	131.8	131.09	132.46	0.18954					75	26	6	0	0	0	0.94516	1	51790	51790		1.7423	0.14999	1	7448800	+		46168	17499	33625	33895	45112	45112					-0.0018066418574562704
RYMQIYNHQL	10	Unmodified	_RYMQIYNHQL_					0	0	0			REV__ENSG00000107816|ENST00000454422|LZTS2	REV__ENSG00000107816|ENST00000454422|LZTS2	MULTI-MATCH	A375_MHC_IP_R1	1		3	455.895923	1364.66594	-0.48253	-0.00021998	0.75774	0.00034545	0.27521	0.00012547	456.23032562380183	131.83	1.2083	131.83	131.13	132.33	0	0.016143	0.00015163	NaN	1.7423	75	23	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5715700	+		46169	17499	33625	33895							-0.0018066418574562704
RYNHFWNI	8	Unmodified	_RYNHFWNI_					0	0	0			REV__ENSG00000111249|ENST00000261726|CUX2;REV__nc|ENSG00000257923|P39880-6|CUX1	REV__nc|ENSG00000257923|P39880-6|CUX1	MULTI-SECPEP	A375_MHC_IP_R2	2	575.664794921875	2	575.283057	1148.55156	-0.10268	-5.9068E-05	3.3398	0.0019213	3.2371	0.0018623	575.7869156952692	89.875	0.61539	90.607	90.186	90.801	0.7318					15	11	2	0	0	0	0.84294	1	34181	34181		30.225	0	1	2283300	+		46170	17658;22894	33626	33896	45113	45113					-0.016771858855463506
RYNKFDFHWRQ	11	Unmodified	_RYNKFDFHWRQ_					0	0	0			REV__ENSG00000158901|ENST00000289953|WFDC8	REV__ENSG00000158901|ENST00000289953|WFDC8	MULTI-MSMS	A375_MHC_IP_R1	1	799.2952880859375	2	798.894566	1595.77458	-0.72452	-0.00057882	1.3815	0.0011037	0.65696	0.00052484	798.8960408057869	136.69	0.30618	136.69	136.56	136.87	0					12	5	3	0	0	0	0.73378	1	52662	52662		5.2969	3.9674	1	5761000	+		46171	20094	33627	33897	45114	45114					0.0005226310888701846
RYNKFDFHWRQ	11	Unmodified	_RYNKFDFHWRQ_					0	0	0			REV__ENSG00000158901|ENST00000289953|WFDC8	REV__ENSG00000158901|ENST00000289953|WFDC8	MULTI-MSMS	A375_MHC_IP_R2	2	799.2957153320312	2	798.894566	1595.77458	-0.7592	-0.00060652	1.1947	0.00095445	0.43551	0.00034793	798.8954353812031	136.62	0.36371	136.73	136.6	136.97	0.11133					13	6	4	0	0	0	0.73378	1	53660	53660		5.2969	3.9674	1	4634000	+		46172	20094	33627	33897	45115	45115					0.0005226310888701846
RYNKFDFHWRQ	11	Unmodified	_RYNKFDFHWRQ_					0	0	0			REV__ENSG00000158901|ENST00000289953|WFDC8	REV__ENSG00000158901|ENST00000289953|WFDC8	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	798.894566	1595.77458	-0.72452	-0.00057882	1.3815	0.0011037	0.65696	0.00052484	798.8960408057869	136.69	0.30618	136.69	136.56	136.87	0	-0.020166	0.00016778	NaN	5.2969	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5761000	+		46173	20094	33627	33897							0.0005226310888701846
RYNKFDFHWRQ	11	Unmodified	_RYNKFDFHWRQ_					0	0	0			REV__ENSG00000158901|ENST00000289953|WFDC8	REV__ENSG00000158901|ENST00000289953|WFDC8	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	798.894566	1595.77458	-0.7592	-0.00060652	1.1947	0.00095445	0.43551	0.00034793	798.8954353812031	136.62	0.36371	136.73	136.6	136.97	0.11133	0.020166	-0.00013064	NaN	5.2969	13	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4634000	+		46174	20094	33627	33897							0.0005226310888701846
RYNRERGRRKR	11	Unmodified	_RYNRERGRRKR_					0	0	0			REV__ENST00000509428.5_1_4:108984801-108991820:-|nuORF	REV__ENST00000509428.5_1_4:108984801-108991820:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	774.8502197265625	2	773.94853	1545.88251	-0.82496	-0.00063848	0.78347	0.00060637	-0.041488	-3.2109E-05	774.4507931498187	143.12	0.45305	143.12	142.79	143.24	0					19	8	3	0	0	0	0.73906	1	54934	54934		0.26902	0.26902	1	1188100	+		46175	25595	33628	33898	45116	45116					0.13140072482792675
RYNRRKYSEIM	11	Unmodified	_RYNRRKYSEIM_					0	0	0		ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	MULTI-MSMS	A375_MHC_IP_R1	1	506.1849670410156	3	505.933148	1514.77762	-0.63118	-0.00031933	-0.64454	-0.00032609	-1.2757	-0.00064543	506.26737150170646	23.439	0.20378	23.439	23.33	23.533	0					5	3	2	0	0	0	0.73679	1	6389	6389		2.4348	0	1	1413200			46176	1436	33629	33899	45117	45117					0.04081770171364951
RYPDRITLI	9	Unmodified	_RYPDRITLI_					0	0	0		ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF	ENSG00000149923|ENST00000279387|PPP4C	ENSG00000149923|ENST00000279387|PPP4C	MULTI-MSMS	A375_MHC_IP_R1	1	383.29241943359375	3	382.892507	1145.65569	0.27063	0.00010362	-0.063712	-2.4395E-05	0.20692	7.9228E-05	382.8924625323523	61.218	0.50961	61.218	60.922	61.432	0					15	9	2	0	0	0	0.41856	1	22068	22068		23.801	8.8439	1	5204200			46177	5832	33630	33900	45118	45118					0.08869096151329359
RYPDRITLI	9	Unmodified	_RYPDRITLI_					0	0	0		ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF	ENSG00000149923|ENST00000279387|PPP4C	ENSG00000149923|ENST00000279387|PPP4C	MULTI-SECPEP	A375_MHC_IP_R1	1	574.2345581054688	2	573.835123	1145.65569	-0.26977	-0.00015481	-0.59774	-0.000343	-0.86751	-0.00049781	573.8349188714906	61.232	0.45925	61.232	61.024	61.483	0					13	8	2	0	0	0	0.70759	1	22062	22062		7.609	5.7647	1	3351700			46178	5832	33630	33900	45119	45119					0.08869096151329359
RYPDRITLI	9	Unmodified	_RYPDRITLI_					0	0	0		ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF	ENSG00000149923|ENST00000279387|PPP4C	ENSG00000149923|ENST00000279387|PPP4C	MULTI-MSMS	A375_MHC_IP_R2	2	383.2925109863281	3	382.892507	1145.65569	-0.41451	-0.00015871	0.13375	5.1212E-05	-0.28076	-0.0001075	382.892529491037	60.315	0.61289	61.06	60.751	61.364	0.74503					19	11	2	0	0	0	0.14659	1	22811	22811		42.312	11.609	1	4299400			46179	5832	33630	33900	45120	45120					0.08869096151329359
RYPGIVKKL	9	Unmodified	_RYPGIVKKL_					0	0	0		ENSG00000180801|ENST00000315366|ARSJ	ENSG00000180801|ENST00000315366|ARSJ	ENSG00000180801|ENST00000315366|ARSJ	MULTI-SECPEP	A375_MHC_IP_R1	1	358.9656677246094	3	358.565843	1072.6757	0.094727	3.3966E-05	-0.60008	-0.00021517	-0.50535	-0.0001812	358.56562175417804	28.532	1.0583	28.532	27.887	28.945	0					22	20	2	0	0	0	0.61758	1	8821	8821		21.59	21.59	1	3346300			46180	8316	33631	33901	45121	45121					0.14226891881935444
RYQEALSEL	9	Unmodified	_RYQEALSEL_					0	0	0		nc|nan|Q9BWL3-3|C1orf43;nc|nan|Q9BWL3-4|C1orf43;nc|nan|Q9BWL3-2|C1orf43;ENSG00000143612|ENST00000368521|C1orf43	nc|nan|Q9BWL3-3|C1orf43	nc|nan|Q9BWL3-3|C1orf43	MULTI-SECPEP	A375_MHC_IP_R1	1	555.1851196289062	2	554.785296	1107.55604	-0.46109	-0.00025581	0.1703	9.4479E-05	-0.29079	-0.00016133	554.7854203118147	53.671	0.50885	53.671	53.453	53.962	0					22	9	3	0	0	0	0.37663	1	19157	19157		43.772	3.8227	1	2596100			46181	5412	33632	33902	45122	45122					0.006562337466903045
RYQEGPVRL	9	Unmodified	_RYQEGPVRL_					0	0	0		nc|ENSG00000159267|P50747|HLCS;ENSG00000159267|ENST00000674895|HLCS	nc|ENSG00000159267|P50747|HLCS	nc|ENSG00000159267|P50747|HLCS	MULTI-SECPEP	A375_MHC_IP_R1	1	372.6413879394531	3	373.208607	1116.60399	0.40829	0.00015238	0.37627	0.00014043	0.78456	0.00029281	373.20868186558516	43.527	0.30584	43.527	43.4	43.706	0					9	5	2	0	0	0	0.78348	1	15099	15099		2.4985	0	1	896480			46182	6363	33633	33903	45123	45123					0.050353524574120456
RYQRHYYYYRN	11	Unmodified	_RYQRHYYYYRN_					0	0	0			REV__ENSG00000140990|ENST00000268668|NDUFB10	REV__ENSG00000140990|ENST00000268668|NDUFB10	MSMS	A375_MHC_IP_R2	2	841.4028930664062	2	841.402755	1680.79096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.6	1	103.37	102.87	103.87	0.76428								0	0	0	0.1636	1	38873	38873		0	0	1		+		46183	19237	33634	33904	45124	45124					-0.022206557250001424
RYRERQRQHKL	11	Unmodified	_RYRERQRQHKL_					0	0	0		ENST00000514900.5_1_3:129122974-129137267:-|nuORF;ENST00000503498.1_1_3:129120438-129130339:-|nuORF;ENSG00000172771|ENST00000505956|EFCAB12	ENST00000514900.5_1_3:129122974-129137267:-|nuORF	ENST00000514900.5_1_3:129122974-129137267:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	524.7074584960938	3	523.965951	1568.87602	-0.74492	-0.00039031	-0.28041	-0.00014693	-1.0253	-0.00053724	523.9660863642438	133.3	0.76678	133.3	132.89	133.66	0					27	14	3	0	0	0	0.73924	1	51469	51469		0.094841	0	1	2166700			46184	7734	33635	33905	45125	45125					0.11434134531441487
RYRERQRQHKL	11	Unmodified	_RYRERQRQHKL_					0	0	0		ENST00000514900.5_1_3:129122974-129137267:-|nuORF;ENST00000503498.1_1_3:129120438-129130339:-|nuORF;ENSG00000172771|ENST00000505956|EFCAB12	ENST00000514900.5_1_3:129122974-129137267:-|nuORF	ENST00000514900.5_1_3:129122974-129137267:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	523.965951	1568.87602	-0.74492	-0.00039031	-0.28041	-0.00014693	-1.0253	-0.00053724	523.9660863642438	133.3	0.76678	133.3	132.89	133.66	0	0	0	NaN	0.094841	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2166700			46185	7734	33635	33905							0.11434134531441487
RYRHLLKAYVD	11	Unmodified	_RYRHLLKAYVD_					0	0	0			REV__ENSG00000103264|ENST00000311635|FBXO31	REV__ENSG00000103264|ENST00000311635|FBXO31	MSMS	A375_MHC_IP_R2	2	478.6097412109375	3	478.605249	1432.79392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.012	1	44.781	44.281	45.281	0.7691								0	0	0	0.16164	1	16416	16416		5.5233	0	1		+		46186	17265	33636	33906	45126	45126					0.09483219399794507
RYRLRYRLALL	11	Unmodified	_RYRLRYRLALL_					0	0	0		ENST00000593099.5_1_17:33325156-33325826:+|nuORF	ENST00000593099.5_1_17:33325156-33325826:+|nuORF	ENST00000593099.5_1_17:33325156-33325826:+|nuORF	MSMS	A375_MHC_IP_R1	1	746.7801513671875	2	746.964794	1491.91504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.11	1	125.11	124.61	125.61	0								0	0	0	0.1636	1	47424	47424		0	0	1				46187	13822	33637	33907	45127	45127					0.18875466833128485
RYRTRRRRIEI	11	Unmodified	_RYRTRRRRIEI_					0	0	0		HOXB7|p.L162R|1|0.26|ENSG00000260027|chr17:48608011-48608011|A/C|missense_variant	HOXB7|p.L162R|1|0.26|ENSG00000260027|chr17:48608011-48608011|A/C|missense_variant	HOXB7|p.L162R|1|0.26|ENSG00000260027|chr17:48608011-48608011|A/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	525.708740234375	3	525.653596	1573.93896	-0.79973	-0.00042038	0.22451	0.00011801	-0.57522	-0.00030237	525.9882536535331	138.16	0.15298	138.16	138.05	138.2	0					4	2	2	0	0	0	0.73934	1	53149	53149		0	0	1	370460			46188	14132	33638	33908	45128	45128					0.17494700319502954
RYRVWLLA	8	Unmodified	_RYRVWLLA_					0	0	0		nc|ENSG00000161270|O60500-2|NPHS1;ENSG00000161270|ENST00000378910|NPHS1	nc|ENSG00000161270|O60500-2|NPHS1	nc|ENSG00000161270|O60500-2|NPHS1	MULTI-MSMS	A375_MHC_IP_R2	2	359.88275146484375	3	359.550304	1075.62908	-0.041724	-1.5002E-05	1.4231	0.00051166	1.3813	0.00049666	359.55056365995716	46.653	0.20362	47.416	47.311	47.515	0.76303					5	3	2	0	0	0	0.7779	1	17486	17486		1.6526	0.32309	1	858730			46189	6470	33639	33909	45129	45129					0.09429452050653708
RYRWQRSKWGR	11	Unmodified	_RYRWQRSKWGR_					0	0	0		ENSG00000155085|ENST00000424296|AK9;nc|ENSG00000155085|Q5TCS8-3|AK9;nc|ENSG00000155085|Q5TCS8-6|AK9;nc|ENSG00000155085|Q5TCS8-1|AK9;nc|ENSG00000155085|Q5TCS8-2|AK9	ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	MSMS	A375_MHC_IP_R1	1	789.929931640625	2	789.929274	1577.844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.22	1	144.22	143.72	144.72	0								0	0	0	0.16339	1	55311	55311		1.0715	1.0715	1				46190	6123	33640	33910	45130	45130					0.07818766848276937
RYSDLKTII	9	Unmodified	_RYSDLKTII_					0	0	0		ENST00000519589.1_1_8:133141511-133152462:-|nuORF;nc|ENSG00000184156|O43525-2|KCNQ3;ENSG00000184156|ENST00000388996|KCNQ3	ENST00000519589.1_1_8:133141511-133152462:-|nuORF	ENST00000519589.1_1_8:133141511-133152462:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	370.6167297363281	3	370.21688	1107.62881	-0.0049403	-1.829E-06	0.045951	1.7012E-05	0.041011	1.5183E-05	370.2168532142374	60.046	0.71191	60.793	60.45	61.162	0.74714					39	13	4	0	0	0	0.41879	1	22687	22687		23.79	3.2088	1	16454000			46191	8554	33641	33911	45131	45131					0.07929987540137517
RYSLGIKALH	10	Unmodified	_RYSLGIKALH_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	A375_MHC_IP_R1	1	386.9569091796875	3	386.564502	1156.67168	0.086502	3.3439E-05	0.11729	4.5342E-05	0.2038	7.878E-05	386.5646098952061	32.325	0.30623	32.325	32.127	32.434	0					7	5	2	0	0	0	0.71466	1	10444	10444		5.4027	2.9679	1	1001900	+		46192	17711	33642	33912	45132	45132					0.09960802388218326
RYSLSKDSAAF	11	Unmodified	_RYSLSKDSAAF_					0	0	0			REV__ENST00000447147.5_1_13:30915457-30937356:-|nuORF	REV__ENST00000447147.5_1_13:30915457-30937356:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	415.2715148925781	3	415.547177	1243.6197	0.21323	8.8607E-05	0.27458	0.0001141	0.48781	0.00020271	415.5470985592087	31.217	0.35562	31.217	31.059	31.414	0					10	6	2	0	0	0	0.87079	1	10021	10021		17.572	3.3537	1	1491900	+		46193	24865	33643	33913	45133	45133					0.007635941838088911
RYTLYRHPWYF	11	Unmodified	_RYTLYRHPWYF_					0	0	0			REV__ENSG00000174792|ENST00000311623|ODAPH	REV__ENSG00000174792|ENST00000311623|ODAPH	MSMS	A375_MHC_IP_R2	2	534.5509643554688	3	534.605249	1600.79392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.755	1	85.491	84.991	85.991	0.73601								0	0	0	0.16351	1	32220	32220		0.45452	0.35968	1		+		46194	21300	33644	33914	45134	45134					0.017552193997744325
RYTNELQTDLF	11	Unmodified	_RYTNELQTDLF_					0	0	0			REV__BBS7|p.S556N|1|0.44|ENSG00000138686|chr4:121833240-121833240|C/T|missense_variant	REV__BBS7|p.S556N|1|0.44|ENSG00000138686|chr4:121833240-121833240|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	700.7451782226562	2	700.346249	1398.67794	-0.74139	-0.00051923	-0.013215	-9.2554E-06	-0.75461	-0.00052849	700.345985495143	83.98	0.40499	83.98	83.786	84.191	0					14	7	3	0	0	0	0.43152	1	30746	30746		36.506	8.8774	1	3053600	+		46195	15496	33645	33915	45135	45135					-0.005447689615721174
RYTNELQTDLF	11	Unmodified	_RYTNELQTDLF_					0	0	0			REV__BBS7|p.S556N|1|0.44|ENSG00000138686|chr4:121833240-121833240|C/T|missense_variant	REV__BBS7|p.S556N|1|0.44|ENSG00000138686|chr4:121833240-121833240|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	700.7459106445312	2	700.346249	1398.67794	-0.68138	-0.0004772	0.082582	5.7836E-05	-0.5988	-0.00041937	700.3462431035355	83.233	0.45678	83.972	83.797	84.254	0.73962					13	8	2	0	0	0	0.43152	1	31660	31660		36.506	8.8774	1	2955300	+		46196	15496	33645	33915	45136	45136					-0.005447689615721174
RYTNELQTDLF	11	Unmodified	_RYTNELQTDLF_					0	0	0			REV__BBS7|p.S556N|1|0.44|ENSG00000138686|chr4:121833240-121833240|C/T|missense_variant	REV__BBS7|p.S556N|1|0.44|ENSG00000138686|chr4:121833240-121833240|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	700.346249	1398.67794	-0.74139	-0.00051923	-0.013215	-9.2554E-06	-0.75461	-0.00052849	700.345985495143	83.98	0.40499	83.98	83.786	84.191	0	0.0040585	-6.9649E-05	NaN	36.506	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3053600	+		46197	15496	33645	33915							-0.005447689615721174
RYTNELQTDLF	11	Unmodified	_RYTNELQTDLF_					0	0	0			REV__BBS7|p.S556N|1|0.44|ENSG00000138686|chr4:121833240-121833240|C/T|missense_variant	REV__BBS7|p.S556N|1|0.44|ENSG00000138686|chr4:121833240-121833240|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	700.346249	1398.67794	-0.68138	-0.0004772	0.082582	5.7836E-05	-0.5988	-0.00041937	700.3462431035355	83.233	0.45678	83.972	83.797	84.254	0.73962	-0.0040585	6.4534E-05	NaN	36.506	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2955300	+		46198	15496	33645	33915							-0.005447689615721174
RYVTLKEKIHK	11	Unmodified	_RYVTLKEKIHK_					0	0	0		ENSG00000177483|ENST00000316997|RBM44	ENSG00000177483|ENST00000316997|RBM44	ENSG00000177483|ENST00000316997|RBM44	MSMS	A375_MHC_IP_R1	1	707.6970825195312	2	707.930086	1413.84562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.39	1	146.39	145.89	146.89	0								0	0	0	0.16354	1	56007	56007		0.30703	0	1				46199	8087	33646	33916	45137	45137					0.15524963093685074
RYVYWVWL	8	Unmodified	_RYVYWVWL_					0	0	0			REV__nc|ENSG00000101194|Q9BYT1-3|SLC17A9	REV__nc|ENSG00000101194|Q9BYT1-3|SLC17A9	MSMS	A375_MHC_IP_R1	1	395.60516357421875	3	395.54656	1183.61785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.78	1	53.78	53.28	54.28	0								0	0	0	0.16876	1	19188	19188		16.942	9.8406	1		+		46200	25357	33647	33917	45138	45138					0.03338629956510886
RYWFEEEAEKL	11	Unmodified	_RYWFEEEAEKL_					0	0	0			REV__ENSG00000147684|ENST00000276689|NDUFB9	REV__ENSG00000147684|ENST00000276689|NDUFB9	MSMS	A375_MHC_IP_R2	2	500.47491455078125	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.35	1	101.11	100.61	101.61	0.76278								0	0	0	0.16138	1	38052	38052		6.2344	3.7996	1		+		46201	19604	33648	33918	45139	45139					-0.02016195927467379
RYYDQQRRKWV	11	Unmodified	_RYYDQQRRKWV_					0	0	0			REV__ENST00000429181.6_2_X:197873-198209:+|nuORF	REV__ENST00000429181.6_2_X:197873-198209:+|nuORF	MSMS	A375_MHC_IP_R1	1	799.420166015625	2	799.420948	1596.82734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.518	1	82.518	82.018	83.018	0								0	0	0	0.1636	1	30176	30176		0	0	1		+		46202	24238	33649	33919	45140	45140					0.05280221171642552
RYYLEKYLILF	11	Unmodified	_RYYLEKYLILF_					0	0	0			REV__ENSG00000100129|ENST00000652021|EIF3L	REV__ENSG00000100129|ENST00000652021|EIF3L	MSMS	A375_MHC_IP_R2	2	507.70806884765625	3	507.621906	1519.84389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.729	1	26.389	25.889	26.889	0.65992								0	0	0	0.16334	1	8628	8628		1.3296	0.11481	1		+		46203	17052	33650	33920	45141	45141					0.10475909285105445
SAAAAAAAAY	10	Unmodified	_SAAAAAAAAY_					0	0	0		ENSG00000214336|ENST00000428390|FOXI3	ENSG00000214336|ENST00000428390|FOXI3	ENSG00000214336|ENST00000428390|FOXI3	MSMS	A375_MHC_IP_R1	1	419.1349182128906	2	419.208692	836.402832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.555	1	31.555	31.055	32.055	0								0	0	0	0.15105	1	10111	10111		15.847	5.6638	1				46204	9614	33651	33921	45142	45142					-0.02191336579107883
SAAAARFY	8	Unmodified	_SAAAARFY_					0	0	0		ENST00000496944.1_1_22:29966149-29977071:-|nuORF;ENSG00000184117|ENST00000216121|NIPSNAP1	ENST00000496944.1_1_22:29966149-29977071:-|nuORF	ENST00000496944.1_1_22:29966149-29977071:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	429.1191711425781	2	428.719227	855.423902	-0.19352	-8.2965E-05	0.17175	7.3634E-05	-0.021766	-9.3316E-06	428.7192918500539	34.265	0.40421	34.265	34.103	34.507	0					12	7	2	0	0	0	0.86263	1	11324	11324		26.884	9.9414	1	2271600			46205	8552	33652	33922	45143	45143					-0.009593264795739742
SAAAARFY	8	Unmodified	_SAAAARFY_					0	0	0		ENST00000496944.1_1_22:29966149-29977071:-|nuORF;ENSG00000184117|ENST00000216121|NIPSNAP1	ENST00000496944.1_1_22:29966149-29977071:-|nuORF	ENST00000496944.1_1_22:29966149-29977071:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	428.719227	855.423902	-0.63101	-0.00027053	0.13157	5.6405E-05	-0.49945	-0.00021412	428.7192067858859	33.5	0.35573	34.252	34.043	34.399	0.75225	-0.0064986	-8.8554E-06	NaN	26.884	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1299300			46206	8552	33652	33922							-0.009593264795739742
SAAAEEFGFGP	11	Unmodified	_SAAAEEFGFGP_					0	0	0			REV__FOXN1|p.P401Afs*144|1|0.83|ENSG00000109101|chr17:28534759-28534774|CCTGGGCTGTCCGCCC/-|frameshift_variant	REV__FOXN1|p.P401Afs*144|1|0.83|ENSG00000109101|chr17:28534759-28534774|CCTGGGCTGTCCGCCC/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	541.575439453125	2	541.743096	1081.47164	-0.58624	-0.00031759	-0.48305	-0.00026169	-1.0693	-0.00057928	541.7427158720806	59.762	0.86398	59.762	59.448	60.312	0					37	16	3	0	0	0	0.82225	1	21470	21470		17.113	0	1	3404400	+		46207	17571	33653	33923	45144	45144					-0.06583717070043349
SAAAEEFGFGP	11	Unmodified	_SAAAEEFGFGP_					0	0	0			REV__FOXN1|p.P401Afs*144|1|0.83|ENSG00000109101|chr17:28534759-28534774|CCTGGGCTGTCCGCCC/-|frameshift_variant	REV__FOXN1|p.P401Afs*144|1|0.83|ENSG00000109101|chr17:28534759-28534774|CCTGGGCTGTCCGCCC/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	542.14208984375	2	541.743096	1081.47164	-1.2165	-0.000659	2.7252	0.0014764	1.5088	0.00081738	541.7425204548134	58.97	1.0133	59.717	59.286	60.299	0.74714					44	19	5	0	0	0	0.82225	1	22319	22319		17.113	0	1	4192400	+		46208	17571	33653	33923	45145	45145					-0.06583717070043349
SAAAIKRIV	9	Unmodified	_SAAAIKRIV_					0	0	0		ENST00000488127.1_1_1:25880414-25890333:+|nuORF;ENSG00000157978|ENST00000374338|LDLRAP1	ENST00000488127.1_1_1:25880414-25890333:+|nuORF	ENST00000488127.1_1_1:25880414-25890333:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	465.14581298828125	2	464.800552	927.58655	-0.29652	-0.00013782	-0.05814	-2.7023E-05	-0.35466	-0.00016485	464.8005673846789	28.82	0.35299	28.82	28.643	28.996	0					8	6	2	0	0	0	0.27742	1	8921	8921		51.63	13.656	1	1514900			46209	6278	33654	33924	45146	45146					0.1198605692242154
SAAALGRCSPA	11	Unmodified	_SAAALGRCSPA_					0	0	0		ENST00000381340.7_1_12:26985723-26986077:-|nuORF	ENST00000381340.7_1_12:26985723-26986077:-|nuORF	ENST00000381340.7_1_12:26985723-26986077:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	502.69464111328125	2	502.253108	1002.49166	-0.6222	-0.0003125	0.33152	0.00016651	-0.29068	-0.00014599	502.75608770034626	76.659	0.35411	77.4	77.199	77.553	0.74052					9	6	2	0	0	0	0.72565	1	29099	29099		13.042	1.4022	1	630960			46210	11370	33655	33925	45147	45147					-0.009482446110837373
SAAAVGPVSF	10	Unmodified	_SAAAVGPVSF_					0	0	0			REV__ENST00000302351.8_1_5:73936805-73937162:-|nuORF	REV__ENST00000302351.8_1_5:73936805-73937162:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	453.64007568359375	2	453.239993	904.465432	-0.38423	-0.00017415	0.24486	0.00011098	-0.13937	-6.3167E-05	453.24003492293025	41.799	0.66238	41.799	41.571	42.233	0					25	12	3	0	0	0	0.19329	1	14440	14440		49.933	9.9833	1	11184000	+		46211	23434	33656	33926	45148	45148					0.00937809489096253
SAAAVGPVSF	10	Unmodified	_SAAAVGPVSF_					0	0	0			REV__ENST00000302351.8_1_5:73936805-73937162:-|nuORF	REV__ENST00000302351.8_1_5:73936805-73937162:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	453.6399230957031	2	453.239993	904.465432	-0.4998	-0.00022653	0.023134	1.0485E-05	-0.47667	-0.00021604	453.23997182541706	41.045	0.50777	41.819	41.54	42.047	0.77451					24	9	3	0	0	0	0.12314	1	15190	15190		58.679	10.93	1	11073000	+		46212	23434	33656	33926	45149	45149					0.00937809489096253
SAADGPRVF	9	Unmodified	_SAADGPRVF_					0	0	0		ENSG00000179115|ENST00000314606|FARSA;nc|ENSG00000179115|Q9Y285-2|FARSA;ENST00000592662.5_1_19:13039347-13044510:-|nuORF	ENSG00000179115|ENST00000314606|FARSA	ENSG00000179115|ENST00000314606|FARSA	MULTI-MSMS	A375_MHC_IP_R1	1	460.66387939453125	2	460.235242	918.45593	-0.20553	-9.4591E-05	-0.047613	-2.1913E-05	-0.25314	-0.0001165	460.235274740317	40.329	1.0644	40.329	39.999	41.063	0					68	20	6	0	0	0	0.0037351	2	13851	13791;13851		137.42	65.502	1	173590000			46213	8205	33657	33927	45150;45151	45151					-0.006559587964261482
SAADGPRVF	9	Unmodified	_SAADGPRVF_					0	0	0		ENSG00000179115|ENST00000314606|FARSA;nc|ENSG00000179115|Q9Y285-2|FARSA;ENST00000592662.5_1_19:13039347-13044510:-|nuORF	ENSG00000179115|ENST00000314606|FARSA	ENSG00000179115|ENST00000314606|FARSA	MULTI-MSMS	A375_MHC_IP_R2	2	460.63482666015625	2	460.235242	918.45593	-0.46595	-0.00021445	0.079445	3.6564E-05	-0.38651	-0.00017788	460.23532947333103	39.519	1.3195	40.293	39.965	41.285	0.77451					72	25	5	0	0	0	0.0098085	3	14538	14538;14576;14800		125.53	56.48	1	183790000			46214	8205	33657	33927	45152;45153;45154	45152					-0.006559587964261482
SAADPREY	8	Unmodified	_SAADPREY_					0	0	0		ENSG00000135048|ENST00000377044|CEMIP2;nc|ENSG00000135048|Q9UHN6-2|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	MULTI-MSMS	A375_MHC_IP_R1	1	455.1091003417969	2	454.709057	907.40356	0.16942	7.7037E-05	0.15403	7.0037E-05	0.32345	0.00014707	454.70900735605835	22.598	0.40512	22.598	22.368	22.773	0					16	7	3	0	0	0	0.71116	1	6094	6094		31.268	10.815	1	2561100			46215	4638	33658	33928	45155	45155					-0.05384541930038722
SAADPREYL	9	Unmodified	_SAADPREYL_					0	0	0		ENSG00000135048|ENST00000377044|CEMIP2;nc|ENSG00000135048|Q9UHN6-2|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	MULTI-MSMS	A375_MHC_IP_R1	1	511.6503601074219	2	511.251089	1020.48762	-0.47779	-0.00024427	-0.125	-6.3906E-05	-0.60279	-0.00030818	511.2508448702068	55.094	0.60934	55.094	54.822	55.431	0					26	11	3	0	0	0	0.04699	1	19670	19670		65.474	23.518	1	5389900			46216	4638	33659	33929	45156	45156					-0.021800108331490264
SAADPREYL	9	Unmodified	_SAADPREYL_					0	0	0		ENSG00000135048|ENST00000377044|CEMIP2;nc|ENSG00000135048|Q9UHN6-2|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	511.6512145996094	2	511.251089	1020.48762	-0.97022	-0.00049603	-0.13234	-6.7662E-05	-1.1026	-0.00056369	511.2509631582292	54.494	0.91429	55.244	54.763	55.678	0.75075					33	17	3	0	0	0	0.30133	1	20488	20488		43.982	30.076	1	5972600			46217	4638	33659	33929	45157	45157					-0.021800108331490264
SAAEGSFLDDT	11	Unmodified	_SAAEGSFLDDT_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MSMS	A375_MHC_IP_R1	1	556.7113647460938	2	556.740751	1111.46695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.97	1	75.97	75.47	76.47	0								0	0	0	0.16108	1	27684	27684		13.042	2.2185	1				46218	2647	33660	33930	45158	45158					-0.08432646003461741
SAAERLLAA	9	Unmodified	_SAAERLLAA_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	MULTI-MSMS	A375_MHC_IP_R1	1	451.6585693359375	2	451.258717	900.50288	-0.17518	-7.905E-05	0.3187	0.00014382	0.14352	6.4766E-05	451.25879967687257	43.783	0.71416	43.783	43.502	44.216	0					34	13	4	0	0	0	0.04699	1	15205	15205		65.474	25.524	1	23561000			46219	5375	33661	33931	45159	45159					0.0486490075469419
SAAERLLAA	9	Unmodified	_SAAERLLAA_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	MULTI-MSMS	A375_MHC_IP_R2	2	451.6583251953125	2	451.258717	900.50288	-0.1941	-8.759E-05	-0.078266	-3.5318E-05	-0.27237	-0.00012291	451.25863173839906	42.875	0.75978	43.648	43.421	44.181	0.7724					37	14	4	0	0	0	0.030891	1	15936	15936		74.2	26.451	1	23089000			46220	5375	33661	33931	45160	45160					0.0486490075469419
SAAESSFLSY	10	Unmodified	_SAAESSFLSY_					0	0	0		ENSG00000260314|ENST00000569591|MRC1	ENSG00000260314|ENST00000569591|MRC1	ENSG00000260314|ENST00000569591|MRC1	MULTI-MSMS	A375_MHC_IP_R2	2	531.6842041015625	2	531.242929	1060.47131	-0.64355	-0.00034188	-2.4257	-0.0012886	-3.0692	-0.0016305	531.2414413738383	76.889	0.70615	77.632	77.252	77.958	0.74293					20	13	2	0	0	0	0.43117	2	29182	29182;29217		32.305	0.18852	1	2154000			46221	9931	33662	33932	45161;45162	45161					-0.056511367899020115
SAAESSFLSY	10	Unmodified	_SAAESSFLSY_					0	0	0		ENSG00000260314|ENST00000569591|MRC1	ENSG00000260314|ENST00000569591|MRC1	ENSG00000260314|ENST00000569591|MRC1	MULTI-MATCH	A375_MHC_IP_R1	1		2	531.242929	1060.47131	-0.60618	-0.00032203	-2.4093	-0.0012799	-3.0155	-0.001602	531.2415328961084	77.429	0.55628	77.429	77.083	77.639	0	-0.10135	3.1711E-06	NaN	32.305	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1863200			46222	9931	33662	33932							-0.056511367899020115
SAAFIDTVTL	10	Unmodified	_SAAFIDTVTL_					0	0	0			REV__ENSG00000113520|ENST00000231449|IL4	REV__ENSG00000113520|ENST00000231449|IL4	MULTI-SECPEP	A375_MHC_IP_R2	2	518.6863403320312	2	519.279315	1036.54408	-0.72639	-0.0003772	-0.44042	-0.0002287	-1.1668	-0.0006059	519.7804025364015	106.51	0.40736	107.27	107.04	107.44	0.75977					9	7	2	0	0	0	0.78945	1	40247	40247		19.257	10.512	1	585860	+		46223	17782	33663	33933	45163	45163					0.027266170035318282
SAAFIDTVTL	10	Unmodified	_SAAFIDTVTL_					0	0	0			REV__ENSG00000113520|ENST00000231449|IL4	REV__ENSG00000113520|ENST00000231449|IL4	MULTI-MATCH	A375_MHC_IP_R1	1		2	519.279315	1036.54408	-0.28408	-0.00014752	-2.3898	-0.001241	-2.6739	-0.0013885	519.2790028393325	107.35	0.40871	107.35	107.08	107.49	0	0.040095	-0.0018155	NaN	19.257	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	794770	+		46224	17782	33663	33933							0.027266170035318282
SAAFRYTAGT	10	Unmodified	_SAAFRYTAGT_					0	0	0		ENSG00000054965|ENST00000356467|FAM168A;nc|ENSG00000054965|Q92567|FAM168A	ENSG00000054965|ENST00000356467|FAM168A	ENSG00000054965|ENST00000356467|FAM168A	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1591186523438	2	522.759081	1043.50361	-0.43355	-0.00022664	0.3745	0.00019577	-0.05905	-3.0869E-05	523.2606307484015	63.228	1.3821	63.228	62.505	63.887	0					54	26	3	0	0	0	0.71464	1	22813	22813		27.223	4.487	1	2558400			46225	1263	33664	33934	45164	45164					-0.016403045962533724
SAAFRYTAGT	10	Unmodified	_SAAFRYTAGT_					0	0	0		ENSG00000054965|ENST00000356467|FAM168A;nc|ENSG00000054965|Q92567|FAM168A	ENSG00000054965|ENST00000356467|FAM168A	ENSG00000054965|ENST00000356467|FAM168A	MULTI-MSMS	A375_MHC_IP_R2	2	523.2179565429688	2	522.759081	1043.50361	-0.64008	-0.00033461	0.014797	7.7355E-06	-0.62528	-0.00032687	522.7588123189577	62.547	1.0139	63.289	62.774	63.788	0.74263					41	19	3	0	0	0	0.63336	1	23639	23639		18.373	1.2602	1	2290600			46226	1263	33664	33934	45165	45165					-0.016403045962533724
SAAGADENEEI	11	Unmodified	_SAAGADENEEI_					0	0	0			REV__ENST00000491881.1_1_6:142491486-142519763:+|nuORF	REV__ENST00000491881.1_1_6:142491486-142519763:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	552.682861328125	2	553.235832	1104.45711	-1.2777	-0.00070685	-1.5824	-0.00087543	-2.86	-0.0015823	553.7366152399887	33.845	0.50536	34.598	34.146	34.651	0.75225					14	9	2	0	0	0	0.90584	1	11998	11998		8.1555	4.8742	1	904040	+		46227	16187	33665	33935	45166	45166					-0.09093834008854174
SAAGLSRLV	9	Unmodified	_SAAGLSRLV_					0	0	0			REV__ZNF518B|p.Q694Rfs*78|1|0.18|ENSG00000178163|chr4:10444250-10444250|C/-|frameshift_variant	REV__ZNF518B|p.Q694Rfs*78|1|0.18|ENSG00000178163|chr4:10444250-10444250|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	437.6610107421875	2	437.261259	872.507966	-0.8088	-0.00035366	0.2566	0.0001122	-0.5522	-0.00024146	437.2613135538578	52.809	0.60887	53.56	53.335	53.944	0.75105					20	11	3	0	0	0	0.23894	1	19942	19942		40.239	7.4535	1	4844800	+		46228	29044	33666	33936	45167	45167					0.0666120461733044
SAAGPRVTVLV	11	Unmodified	_SAAGPRVTVLV_					0	0	0		ENSG00000181027|ENST00000318584|FKRP	ENSG00000181027|ENST00000318584|FKRP	ENSG00000181027|ENST00000318584|FKRP	MULTI-SECPEP	A375_MHC_IP_R1	1	1070.35107421875	1	1069.63642	1068.62914	-0.093521	-0.00010003	-1.4346	-0.0015345	-1.5282	-0.0016346	1070.6371148108105	130.4	0.61046	130.4	129.9	130.51	0					14	11	2	0	0	0	0.9836	1	50016	50016		7.609	0.31972	1	25288000			46229	8330	33667	33937	45168	45168					0.09757407259962747
SAAIELAGGV	10	Unmodified	_SAAIELAGGV_					0	0	0			REV__ENST00000234875.8_1_1:6245842-6245950:-|nuORF	REV__ENST00000234875.8_1_1:6245842-6245950:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	887.882568359375	1	887.483273	886.475997	-0.51008	-0.00045269	0.0066458	5.898E-06	-0.50343	-0.00044679	887.4831124305482	74.259	0.71137	74.997	74.604	75.315	0.73751					20	13	2	0	0	0	0.12314	1	28212	28212		58.679	3.9053	1	1881600	+		46230	23084	33668	33938	45169	45169					0.028217921435384596
SAAIELAGGV	10	Unmodified	_SAAIELAGGV_					0	0	0			REV__ENST00000234875.8_1_1:6245842-6245950:-|nuORF	REV__ENST00000234875.8_1_1:6245842-6245950:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	887.483273	886.475997	-0.22483	-0.00019954	-0.30253	-0.00026849	-0.52736	-0.00046802	887.4829265445703	74.998	0.65822	74.998	74.704	75.362	0	0.00072092	-0.00018196	NaN	58.679	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1644700	+		46231	23084	33668	33938							0.028217921435384596
SAAIELAGGV	10	Unmodified	_SAAIELAGGV_					0	0	0			REV__ENST00000234875.8_1_1:6245842-6245950:-|nuORF	REV__ENST00000234875.8_1_1:6245842-6245950:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	887.483273	886.475997	-0.51008	-0.00045269	0.0066458	5.898E-06	-0.50343	-0.00044679	887.4831124305482	74.259	0.71137	74.997	74.604	75.315	0.73751	-0.00072092	9.2424E-05	NaN	58.679	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1881600	+		46232	23084	33668	33938							0.028217921435384596
SAAISQITIY	10	Unmodified	_SAAISQITIY_					0	0	0			REV__ENSG00000205678|ENST00000381210|TECRL	REV__ENSG00000205678|ENST00000381210|TECRL	MULTI-MSMS	A375_MHC_IP_R1	1	356.2633361816406	3	356.197485	1065.57063	-0.17295	-6.1604E-05	-1.3069	-0.00046551	-1.4798	-0.00052711	356.1970124823764	27.05	0.9073	27.05	26.524	27.432	0					33	17	3	0	0	0	0.70682	1	8252	8252		9.2438	3.8411	1	4478500	+		46233	22578	33669	33939	45170	45170					0.04046305894848956
SAAKNRIPLT	10	Unmodified	_SAAKNRIPLT_					0	0	0			REV__ENST00000514252.1_1_4:73978989-74017230:-|nuORF	REV__ENST00000514252.1_1_4:73978989-74017230:-|nuORF	MSMS	A375_MHC_IP_R1	1	357.6145324707031	3	357.548741	1069.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.024	1	61.024	60.524	61.524	0								0	0	0	0.15561	1	21983	21983		2.6312	0.54523	1		+		46234	18655	33670	33940	45171	45171					0.09236523117237994
SAAKNVAVTV	10	Unmodified	_SAAKNVAVTV_					0	0	0		ENSG00000105376|ENST00000221980|ICAM5	ENSG00000105376|ENST00000221980|ICAM5	ENSG00000105376|ENST00000221980|ICAM5	MULTI-SECPEP	A375_MHC_IP_R2	2	480.1529541015625	2	480.279649	958.544745	-0.37373	-0.0001795	-0.28186	-0.00013537	-0.65559	-0.00031487	480.27964791635145	43.71	0.2006	44.479	44.329	44.53	0.76909					5	3	2	0	0	0	0.85215	1	16277	16277		12.873	0	1	756110			46235	2596	33671	33941	45172	45172					0.06381456443227762
SAAKNVAVTV	10	Unmodified	_SAAKNVAVTV_					0	0	0		ENSG00000105376|ENST00000221980|ICAM5	ENSG00000105376|ENST00000221980|ICAM5	ENSG00000105376|ENST00000221980|ICAM5	MULTI-MATCH	A375_MHC_IP_R1	1		2	480.279649	958.544745	-2.7503E-05	-1.3209E-08	0.27019	0.00012977	0.27017	0.00012976	480.27972679253804	44.566	0.20551	44.566	44.471	44.676	0	0.04329	0.00018475	NaN	17.443	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	889480			46236	2596	33671	33941							0.06381456443227762
SAALASLRLK	10	Unmodified	_SAALASLRLK_					0	0	0			REV__ENSG00000171956|ENST00000396057|FOXB1	REV__ENSG00000171956|ENST00000396057|FOXB1	MULTI-SECPEP	A375_MHC_IP_R2	2	515.6712646484375	2	515.324391	1028.63423	-0.56951	-0.00029348	-0.3068	-0.0001581	-0.87631	-0.00045159	515.3241225624473	43.777	0.65537	44.546	44.228	44.883	0.76909					26	12	3	0	0	0	0.93194	1	16438	16438		1.1933	0	1	3638000	+		46237	21113	33672	33942	45173	45173					0.1210571112260368
SAALPRRY	8	Unmodified	_SAALPRRY_					0	0	0		nc|ENSG00000025770|Q6IBW4-2|NCAPH2;ENSG00000025770|ENST00000420993|NCAPH2;nc|ENSG00000025770|Q6IBW4-4|NCAPH2	nc|ENSG00000025770|Q6IBW4-2|NCAPH2	nc|ENSG00000025770|Q6IBW4-2|NCAPH2	MULTI-SECPEP	A375_MHC_IP_R1	1	467.6667175292969	2	467.266876	932.519199	-0.24609	-0.00011499	-0.3188	-0.00014896	-0.56489	-0.00026395	467.2666049664294	20.132	0.3545	20.132	19.928	20.283	0					13	6	3	0	0	0	0.972	1	5132	5132		7.9102	0	1	1914700			46238	1089	33673	33943	45174	45174					0.050240267114645576
SAALRAVY	8	Unmodified	_SAALRAVY_					0	0	0		ENSG00000196449|ENST00000373044|YRDC	ENSG00000196449|ENST00000373044|YRDC	ENSG00000196449|ENST00000373044|YRDC	MULTI-MSMS	A375_MHC_IP_R1	1	426.14276123046875	2	425.742702	849.470852	-0.14526	-6.1842E-05	0.60495	0.00025755	0.45969	0.00019571	425.74287747650516	37.751	0.56192	37.751	37.454	38.016	0					18	10	2	0	0	0	0.6833	1	12760	12760		39.95	11.463	1	2581700			46239	9042	33674	33944	45175	45175					0.040095330715644195
SAALRCPDPV	10	Unmodified	_SAALRCPDPV_					0	0	0		ENSG00000149823|ENST00000279281|VPS51;ENST00000530673.1_2_11:64878667-64879056:+|nuORF;ENST00000533827.5_1_11:64876997-64879056:+|nuORF;nc|ENSG00000149823|Q9UID3-2|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MSMS	A375_MHC_IP_R1	1	514.925048828125	2	514.763309	1027.51206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.369	1	53.369	52.869	53.869	0								0	0	0	0.14483	1	19023	19023		27.629	2.6378	1				46240	5831	33675	33945	45176	45176					-0.0005907395127451309
SAALVPKLRK	10	Unmodified	_SAALVPKLRK_					0	0	0			REV__nc|ENSG00000162643|Q8IWG1-2|DNAI3	REV__nc|ENSG00000162643|Q8IWG1-2|DNAI3	MULTI-MSMS	A375_MHC_IP_R2	2	362.3006286621094	3	361.572998	1081.69716	-0.51116	-0.00018482	-0.51245	-0.00018529	-1.0236	-0.00037011	361.5728598707418	24.391	3.2583	25.035	24.499	27.757	0.64368					171	63	5	0	0	0	0.66857	2	7909	7906;7909		15.739	4.2439	1	2567600000	+		46241	20284	33676	33946	45177;45178	45178					0.15958276910646418
SAANPRGVF	9	Unmodified	_SAANPRGVF_					0	0	0		ENSG00000204394|ENST00000375663|VARS1;nc|ENSG00000204394|P26640-2|VARS1	ENSG00000204394|ENST00000375663|VARS1	ENSG00000204394|ENST00000375663|VARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	460.1431884765625	2	459.743234	917.471915	-0.20526	-9.4366E-05	-0.17008	-7.8191E-05	-0.37533	-0.00017256	459.743184004842	33.827	0.8075	33.827	33.597	34.405	0					29	15	3	0	0	0	0.011405	1	11085	11085		99.755	39.681	1	15342000			46242	9439	33677	33947	45179	45179					0.0098774744047887
SAANPRGVF	9	Unmodified	_SAANPRGVF_					0	0	0		ENSG00000204394|ENST00000375663|VARS1;nc|ENSG00000204394|P26640-2|VARS1	ENSG00000204394|ENST00000375663|VARS1	ENSG00000204394|ENST00000375663|VARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	460.14288330078125	2	459.743234	917.471915	-0.56499	-0.00025975	-0.20684	-9.5093E-05	-0.77183	-0.00035484	459.74315361539954	33.062	0.91596	33.814	33.534	34.45	0.75225					33	17	3	0	0	0	0.022401	1	11800	11800		99.755	39.681	1	15254000			46243	9439	33677	33947	45180	45180					0.0098774744047887
SAAPAKKP	8	Unmodified	_SAAPAKKP_					0	0	0		nc|ENSG00000137221|Q5JTD0-3|TJAP1;ENST00000483640.5_1_6:43466739-43470406:+|nuORF;TJAP1|p.Q286Afs*28|1|0.06|ENSG00000137221|chr6:43505035-43505036|-/GGCTCAT|frameshift_variant;nc|ENSG00000137221|Q5JTD0-2|TJAP1;ENSG00000137221|ENST00000372449|TJAP1	nc|ENSG00000137221|Q5JTD0-3|TJAP1	nc|ENSG00000137221|Q5JTD0-3|TJAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	769.8557739257812	1	769.456665	768.449388	-0.45034	-0.00034652	0.486	0.00037396	0.035657	2.7437E-05	769.4562106686412	55.526	0.25446	55.526	55.381	55.635	0					8	4	2	0	0	0	0.86765	1	19891	19891		24.674	8.9057	1	1467900			46244	4871	33678	33948	45181	45181					0.055901480428588
SAAPHHPFSL	10	Unmodified	_SAAPHHPFSL_					0	0	0		ENSG00000184381|ENST00000332509|PLA2G6;nc|ENSG00000184381|O60733-4|PLA2G6;nc|ENSG00000184381|O60733-3|PLA2G6	ENSG00000184381|ENST00000332509|PLA2G6	ENSG00000184381|ENST00000332509|PLA2G6	MULTI-SECPEP	A375_MHC_IP_R1	1	531.6237182617188	2	532.269616	1062.52468	-0.8742	-0.00046531	-2.3502	-0.0012509	-3.2244	-0.0017163	532.7714700644518	39.764	0.50797	39.764	39.491	39.999	0					19	9	3	0	0	0	0.87163	1	13672	13672		2.9952	0	1	5828900			46245	8579	33679	33949	45182	45182					-0.004082944967194635
SAAPKLEPVP	10	Unmodified	_SAAPKLEPVP_					0	0	0		PDLIM5|p.P90L|1|0.44|ENSG00000163110|chr4:94573371-94573371|C/T|missense_variant	PDLIM5|p.P90L|1|0.44|ENSG00000163110|chr4:94573371-94573371|C/T|missense_variant	PDLIM5|p.P90L|1|0.44|ENSG00000163110|chr4:94573371-94573371|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	504.127197265625	2	504.78985	1007.56515	-0.75559	-0.00038142	0.17078	8.6209E-05	-0.58481	-0.00029521	505.2930307884145	38.211	0.30443	38.211	37.964	38.268	0					7	5	2	0	0	0	0.90853	1	12934	12934		3.5965	2.8029	1	2588700			46246	15154	33680	33950	45183	45183					0.06166627103038991
SAAPKLEPVP	10	Unmodified	_SAAPKLEPVP_					0	0	0		PDLIM5|p.P90L|1|0.44|ENSG00000163110|chr4:94573371-94573371|C/T|missense_variant	PDLIM5|p.P90L|1|0.44|ENSG00000163110|chr4:94573371-94573371|C/T|missense_variant	PDLIM5|p.P90L|1|0.44|ENSG00000163110|chr4:94573371-94573371|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	504.78985	1007.56515	-1.2349	-0.00062339	-0.43005	-0.00021708	-1.665	-0.00084047	505.2933281125338	37.229	0.35488	38	37.816	38.171	0.7709	-0.10547	-0.00030326	NaN	3.5965	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	831490			46247	15154	33680	33950							0.06166627103038991
SAAQPGVAF	9	Unmodified	_SAAQPGVAF_					0	0	0		nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	MULTI-SECPEP	A375_MHC_IP_R2	2	423.95880126953125	2	424.21906	846.423567	-0.53207	-0.00022571	0.33309	0.0001413	-0.19898	-8.4411E-05	424.2190528705464	57.218	0.56087	57.967	57.711	58.272	0.74958					13	10	2	0	0	0	0.69381	1	21630	21630		10.8	2.644	1	516700			46248	2782	33681	33951	45184	45184					-0.005787461994259502
SAAQRFIL	8	Unmodified	_SAAQRFIL_					0	0	0		ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-MSMS	A375_MHC_IP_R2	2	453.66351318359375	2	453.263802	904.513051	-0.53832	-0.000244	-0.33233	-0.00015063	-0.87065	-0.00039463	453.26377588581994	60.465	0.50951	61.21	60.955	61.464	0.74503					20	9	3	0	0	0	0.53027	1	22917	22917		47.749	13.347	1	2170900			46249	6530	33682	33952	45185	45185					0.05697508479943281
SAAQRLTAL	9	Unmodified	_SAAQRLTAL_					0	0	0		ENSG00000158435|ENST00000289382|CNOT11	ENSG00000158435|ENST00000289382|CNOT11	ENSG00000158435|ENST00000289382|CNOT11	MULTI-SECPEP	A375_MHC_IP_R2	2	465.6980285644531	2	465.771991	929.529429	-0.83447	-0.00038867	0.22321	0.00010396	-0.61127	-0.00028471	465.77198963291715	40.769	0.35734	41.543	41.335	41.692	0.77451					10	6	2	0	0	0	0.33896	1	15079	15079		47.594	16.326	1	1687000			46250	6305	33683	33953	45186	45186					0.06184589646022687
SAAQVRFP	8	Unmodified	_SAAQVRFP_					0	0	0			REV__nc|ENSG00000226807|Q6ZUA9|MROH5	REV__nc|ENSG00000226807|Q6ZUA9|MROH5	MSMS	A375_MHC_IP_R1	1	438.6401672363281	2	438.240327	874.466101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.859	1	34.859	34.359	35.359	0								0	0	0	0.16122	1	11534	11534		44.407	7.9008	1		+		46251	27507	33684	33954	45187	45187					0.023846489288075645
SAARAPRPRSS	11	Unmodified	_SAARAPRPRSS_					0	0	0		ENST00000445369.2_1_16:3063604-3064486:+|nuORF	ENST00000445369.2_1_16:3063604-3064486:+|nuORF	ENST00000445369.2_1_16:3063604-3064486:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	578.7203979492188	2	578.320703	1154.62685	0.17602	0.0001018	-0.29267	-0.00016926	-0.11665	-6.7462E-05	578.3204622990248	127.44	0.70876	127.44	126.96	127.67	0					18	13	2	0	0	0	0.73135	1	48911	48911		7.609	1.8771	1	18894000			46252	12026	33685	33955	45188	45188					0.055723715748854374
SAARPKNTV	9	Unmodified	_SAARPKNTV_					0	0	0			REV__ENSG00000005249|ENST00000265717|PRKAR2B	REV__ENSG00000005249|ENST00000265717|PRKAR2B	MSMS	A375_MHC_IP_R2	2	472.202392578125	2	472.269616	942.524678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.018	1	27.689	27.189	28.189	0.67151								0	0	0	0.15411	1	9190	9190		14.838	3.198	1		+		46253	16118	33686	33956	45189	45189					0.05111705503270514
SAASPHYQEW	10	Unmodified	_SAASPHYQEW_					0	0	0		ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1;SAMD1|p.P333Dfs*27|1|0.12|ENSG00000141858|chr19:14088912-14088913|-/CG|frameshift_variant	ENSG00000141858|ENST00000533683|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	MULTI-SECPEP	A375_MHC_IP_R1	1	588.6593017578125	2	588.259445	1174.50434	-0.16462	-9.684E-05	0.29953	0.0001762	0.13491	7.9363E-05	588.2594143239439	38.627	0.45882	38.627	38.423	38.882	0					19	8	3	0	0	0	0.022742	1	13137	13137		107.56	67.614	1	6595400			46254	5274	33687	33957	45190	45190					-0.0759350994721899
SAASPHYQEW	10	Unmodified	_SAASPHYQEW_					0	0	0		ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1;SAMD1|p.P333Dfs*27|1|0.12|ENSG00000141858|chr19:14088912-14088913|-/CG|frameshift_variant	ENSG00000141858|ENST00000533683|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	MULTI-MSMS	A375_MHC_IP_R2	2	588.6590576171875	2	588.259445	1174.50434	-0.7585	-0.0004462	0.29767	0.0001751	-0.46084	-0.00027109	588.2595628950093	37.905	0.41218	38.68	38.483	38.895	0.77451					19	7	4	0	0	0	0.011235	1	13911	13911		124.95	86.979	1	7408700			46255	5274	33687	33957	45191	45191					-0.0759350994721899
SAATLWSLE	9	Unmodified	_SAATLWSLE_					0	0	0			REV__ENSG00000178764|ENST00000314393|ZHX2	REV__ENSG00000178764|ENST00000314393|ZHX2	MSMS	A375_MHC_IP_R2	2	489.1639099121094	2	489.250557	976.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.304	1	45.073	44.573	45.573	0.7691								0	0	0	0.11948	1	16533	16533		36.044	3.7387	1		+		46256	21518	33688	33958	45192	45192					-0.00262225202038735
SAATPLSTAL	10	Unmodified	_SAATPLSTAL_					0	0	0			REV__nc|ENSG00000122548|Q14695|KIAA0087	REV__nc|ENSG00000122548|Q14695|KIAA0087	MULTI-SECPEP	A375_MHC_IP_R1	1	466.6579895019531	2	466.258382	930.502212	-0.25492	-0.00011886	0.071475	3.3326E-05	-0.18345	-8.5534E-05	466.25828481254615	39.385	0.86274	39.385	39.085	39.948	0					24	16	2	0	0	0	0.48072	1	13488	13488		24.021	9.1823	1	2876300	+		46257	27202	33689	33959	45193	45193					0.034180613149942474
SAAVRVAY	8	Unmodified	_SAAVRVAY_					0	0	0		ENST00000427191.6_1_4:87515508-87515601:+|nuORF	ENST00000427191.6_1_4:87515508-87515601:+|nuORF	ENST00000427191.6_1_4:87515508-87515601:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	419.1349182128906	2	418.734877	835.455202	0.19852	8.3129E-05	0.091857	3.8464E-05	0.29038	0.00012159	418.73486974769753	31.606	0.66087	31.606	31.363	32.024	0					32	12	3	0	0	0	0.55873	1	10111	10111		58.679	16.584	1	16369000			46258	11817	33690	33960	45194	45194					0.030892465545093728
SAAVRVAY	8	Unmodified	_SAAVRVAY_					0	0	0		ENST00000427191.6_1_4:87515508-87515601:+|nuORF	ENST00000427191.6_1_4:87515508-87515601:+|nuORF	ENST00000427191.6_1_4:87515508-87515601:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	419.1350402832031	2	418.734877	835.455202	-0.098851	-4.1392E-05	-0.026121	-1.0938E-05	-0.12497	-5.233E-05	418.73482114602206	30.921	0.65844	31.64	31.367	32.026	0.71857					30	12	3	0	0	0	0.11362	1	10879	10879		92.491	44.146	1	16064000			46259	11817	33690	33960	45195	45195					0.030892465545093728
SAAWDRPPL	9	Unmodified	_SAAWDRPPL_					0	0	0		ENST00000356432.7_1_16:129505-133057:+|nuORF	ENST00000356432.7_1_16:129505-133057:+|nuORF	ENST00000356432.7_1_16:129505-133057:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	507.70233154296875	2	506.764166	1011.51378	-0.32225	-0.00016331	0.08826	4.4727E-05	-0.23399	-0.00011858	506.76414978059887	63.269	1.4806	63.269	62.711	64.191	0					77	28	4	0	0	0	0.31062	1	22753	22753		29.841	11.694	1	29828000			46260	10966	33691	33961	45196	45196					0.008483031289870269
SAAWDRPPL	9	Unmodified	_SAAWDRPPL_					0	0	0		ENST00000356432.7_1_16:129505-133057:+|nuORF	ENST00000356432.7_1_16:129505-133057:+|nuORF	ENST00000356432.7_1_16:129505-133057:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	507.7025146484375	2	506.764166	1011.51378	-0.8326	-0.00042193	0.13582	6.8827E-05	-0.69679	-0.00035311	506.76415393375345	62.464	1.5185	63.206	62.471	63.989	0.74263					79	29	4	0	0	0	0.31062	1	23583	23583		29.841	11.694	1	32150000			46261	10966	33691	33961	45197	45197					0.008483031289870269
SAAYLPRMW	9	Unmodified	_SAAYLPRMW_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	A375_MHC_IP_R1	1	548.1734008789062	2	547.776219	1093.53789	-0.46216	-0.00025316	-0.4613	-0.00025269	-0.92347	-0.00050585	547.7757061863688	88.325	0.91846	88.325	88	88.919	0					34	17	3	0	0	0	0.61998	1	32398	32398		13.906	7.1829	1	5138000			46262	2388	33692	33962	45198	45198					-0.0051417970898910426
SAAYYLNDL	9	Unmodified	_SAAYYLNDL_					0	0	0		nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2;nc|ENSG00000127955|P63096-2|GNAI1;ENSG00000127955|ENST00000649796|GNAI1;ENSG00000214415|ENST00000398291|GNAT3	nc|ENSG00000114353|P04899-6|GNAI2;ENSG00000214415|ENST00000398291|GNAT3	nc|ENSG00000114353|P04899-6|GNAI2	MULTI-MSMS	A375_MHC_IP_R1	1	515.6463012695312	2	515.248015	1028.48148	-0.68484	-0.00035286	-2.1975	-0.0011322	-2.8823	-0.0014851	515.2466574818791	94.727	0.86694	94.727	94.394	95.261	0					21	16	2	0	0	0	0.13797	1	34846	34846		43.858	18.459	1	1641700			46263	3213;9617	33693	33963	45199	45199					-0.03162529064661612
SACCGGFC	8	Unmodified	_SACCGGFC_					0	0	0		DBX2|p.S155F|2|0.45|ENSG00000185610|chr12:45036054-45036054|G/A|missense_variant	DBX2|p.S155F|2|0.45|ENSG00000185610|chr12:45036054-45036054|G/A|missense_variant	DBX2|p.S155F|2|0.45|ENSG00000185610|chr12:45036054-45036054|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	747.3875122070312	1	747.225878	746.218602	-0.41311	-0.00030869	-0.6872	-0.0005135	-1.1003	-0.00082219	747.2260039642148	118.14	0.25377	118.14	117.92	118.17	0					5	4	2	0	0	0	0.77861	1	43372	43372		0	0	1	4594100			46264	711	33694	33964	45200	45200					-0.16465887597325946
SADASTMCPGY	11	Unmodified	_SADASTMCPGY_					0	0	0		ENST00000559471.5_1_15:49327615-49327825:-|nuORF	ENST00000559471.5_1_15:49327615-49327825:-|nuORF	ENST00000559471.5_1_15:49327615-49327825:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	552.1434936523438	2	551.712624	1101.4107	-0.68919	-0.00038023	0.16741	9.236E-05	-0.52178	-0.00028787	551.7126045521239	32.996	1.7706	32.996	32.231	34.001	0					49	34	2	0	0	0	0.59093	1	10491	10491		24.021	11.489	1	8306900			46265	13481	33695	33965	45201	45201					-0.13595313436144352
SADDGVSLCRP	11	Unmodified	_SADDGVSLCRP_					0	0	0		nc|ENSG00000123977|Q8N136-2|DAW1	nc|ENSG00000123977|Q8N136-2|DAW1	nc|ENSG00000123977|Q8N136-2|DAW1	MSMS	A375_MHC_IP_R1	1	560.2136840820312	2	560.258588	1118.50262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.522	1	63.522	63.022	64.022	0								0	0	0	0.15541	1	22962	22962		17.113	0	1				46266	14574	33696	33966	45202	45202					-0.05188887027452438
SADEPMTIFY	10	Unmodified	_SADEPMTIFY_					0	0	0		POLR3K|p.T93I|1|0.15|ENSG00000161980|chr16:47479-47479|G/A|missense_variant	POLR3K|p.T93I|1|0.15|ENSG00000161980|chr16:47479-47479|G/A|missense_variant	POLR3K|p.T93I|1|0.15|ENSG00000161980|chr16:47479-47479|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	587.177978515625	2	587.260265	1172.50598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.012	1	60.759	60.259	61.259	0.74714								0	0	0	0.14304	1	22712	22712		28.487	8.0332	1				46267	15207	33697	33967	45203	45203					-0.07337636973443296
SADETAKCNCS	11	Unmodified	_SADETAKCNCS_					0	0	0			REV__ENSG00000134744|ENST00000257177|TUT4	REV__ENSG00000134744|ENST00000257177|TUT4	MSMS	A375_MHC_IP_R1	1	564.6824951171875	2	564.718438	1127.42232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.201	1	85.201	84.701	85.701	0								0	0	0	0.16108	1	31222	31222		13.042	0.51092	1		+		46268	18796	33698	33968	45204	45204					-0.13629116412812436
SADFGTFNTS	10	Unmodified	_SADFGTFNTS_					0	0	0		nc|ENSG00000173744|P52594-2|AGFG1;nc|ENSG00000173744|P52594-3|AGFG1;ENSG00000173744|ENST00000310078|AGFG1;nc|ENSG00000173744|P52594-4|AGFG1	nc|ENSG00000173744|P52594-2|AGFG1	nc|ENSG00000173744|P52594-2|AGFG1	MULTI-MSMS	A375_MHC_IP_R1	1	524.1668090820312	2	523.724904	1045.43525	-0.69186	-0.00036234	-1.035	-0.00054207	-1.7269	-0.00090441	524.225355075444	84.933	0.81528	84.933	84.292	85.107	0					25	15	2	0	0	0	0.70329	1	31163	31163		10.824	0	1	1513900			46269	7826	33699	33969	45205	45205					-0.08564593966752909
SADGTLKLW	9	Unmodified	_SADGTLKLW_					0	0	0		APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1	APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant	APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	495.1960754394531	2	495.766374	989.518196	-0.37974	-0.00018826	-0.14281	-7.0802E-05	-0.52255	-0.00025906	495.7663679602524	77.506	1.068	77.506	76.93	77.998	0					49	20	4	0	0	0	0.010462	1	28252	28252		145.13	0	1	29877000			46270	156	33700	33970	45206	45206					0.023017675519099612
SADGTLKLW	9	Unmodified	_SADGTLKLW_					0	0	0		APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1	APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant	APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	496.1664733886719	2	495.766374	989.518196	-0.46425	-0.00023016	-0.20473	-0.0001015	-0.66898	-0.00033166	495.76636169179966	76.636	0.8614	77.376	76.994	77.855	0.74052					47	16	4	0	0	0	0.0023519	2	29054	29054;29246		140.63	0	1	24403000			46271	156	33700	33970	45207;45208	45207					0.023017675519099612
SADKTVALW	9	Unmodified	_SADKTVALW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-4|RBBP4;ENST00000502424.1_1_5:14797477-14798464:-|nuORF	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-SECPEP	A375_MHC_IP_R2	2	496.1662292480469	2	495.766374	989.518196	-0.38963	-0.00019316	-0.53454	-0.000265	-0.92416	-0.00045817	495.7661785311495	64.171	0.61028	64.911	64.547	65.157	0.74022					19	11	2	0	0	0	0.11711	1	24318	24318		69.105	25.247	1	2770700			46272	6544	33701	33971	45209	45209					0.023017675519099612
SADKTVKLW	9	Unmodified	_SADKTVKLW_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6946411132812	2	524.295299	1046.57605	-0.45929	-0.0002408	-0.79334	-0.00041594	-1.2526	-0.00065675	524.2950374437632	44.035	0.51017	44.035	43.757	44.267	0					18	9	3	0	0	0	0.11849	1	15355	15355		64.927	35.845	1	2984800			46273	4853	33702	33972	45210	45210					0.05462029477325814
SADKTVKLW	9	Unmodified	_SADKTVKLW_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-SECPEP	A375_MHC_IP_R2	2	524.6946411132812	2	524.295299	1046.57605	-0.41039	-0.00021517	-0.68639	-0.00035987	-1.0968	-0.00057504	524.2948594466542	43.129	0.60786	43.901	43.623	44.231	0.7724					17	11	2	0	0	0	0.14438	1	16097	16097		44.392	15.31	1	2864000			46274	4853	33702	33972	45211	45211					0.05462029477325814
SADLLCIPLV	10	Unmodified	_SADLLCIPLV_					0	0	0			REV__PRSS22|p.P163L|1|0.12|ENSG00000005001|chr16:2855645-2855645|G/A|missense_variant	REV__PRSS22|p.P163L|1|0.12|ENSG00000005001|chr16:2855645-2855645|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	522.1910400390625	2	522.293911	1042.57327	-0.42675	-0.00022289	-1.992	-0.0010404	-2.4188	-0.0012633	522.7953937379262	85.314	0.66356	86.05	85.677	86.341	0.73601					21	12	3	0	0	0	0.72086	1	32395	32395		24.021	8.1734	1	1569100	+		46275	27848	33703	33973	45212	45212					0.053684380281538324
SADLNCNIQDD	11	Unmodified	_SADLNCNIQDD_					0	0	0		nc|ENSG00000187079|P28347-2|TEAD1	nc|ENSG00000187079|P28347-2|TEAD1	nc|ENSG00000187079|P28347-2|TEAD1	MULTI-MSMS	A375_MHC_IP_R2	2	604.648681640625	2	604.248417	1206.48228	-0.40005	-0.00024173	0.056769	3.4303E-05	-0.34328	-0.00020742	604.2485225789372	46.015	0.45474	46.78	46.503	46.957	0.76519					13	8	2	0	0	0	0.66366	1	17258	17258		18.373	1.2602	1	2909100			46276	14817	33704	33974	45213	45213					-0.112701024779426
SADLNCNIQDD	11	Unmodified	_SADLNCNIQDD_					0	0	0		nc|ENSG00000187079|P28347-2|TEAD1	nc|ENSG00000187079|P28347-2|TEAD1	nc|ENSG00000187079|P28347-2|TEAD1	MULTI-MATCH	A375_MHC_IP_R1	1		2	604.248417	1206.48228	-0.44442	-0.00026854	0.66923	0.00040438	0.22481	0.00013584	604.2485849074329	46.58	0.60503	46.58	46.245	46.85	0	-0.099798	0.00035254	NaN	18.373	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2346300			46277	14817	33704	33974							-0.112701024779426
SADNEECWV	9	Unmodified	_SADNEECWV_					0	0	0		TENM3|p.R34W|1|0.14|ENSG00000218336|chr4:182324120-182324120|C/T|missense_variant	TENM3|p.R34W|1|0.14|ENSG00000218336|chr4:182324120-182324120|C/T|missense_variant	TENM3|p.R34W|1|0.14|ENSG00000218336|chr4:182324120-182324120|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	526.6869506835938	2	526.703114	1051.39167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.073	1	64.073	63.573	64.573	0								0	0	0	0.1521	1	23175	23175		18.135	5.6034	1				46278	29325	33705	33975	45214	45214					-0.1319652673555538
SADPDNLKY	9	Unmodified	_SADPDNLKY_					0	0	0		ENSG00000157106|ENST00000446231|SMG1	ENSG00000157106|ENST00000446231|SMG1	ENSG00000157106|ENST00000446231|SMG1	MULTI-MSMS	A375_MHC_IP_R1	1	513.1685791015625	2	511.743096	1021.47164	-0.61051	-0.00031243	0.15818	8.0949E-05	-0.45233	-0.00023148	511.7430452944539	32.256	0.56052	32.256	32.024	32.585	0					27	10	4	0	0	0	0.51106	1	10407	10407		19.257	9.0736	1	35090000			46279	6228	33706	33976	45215	45215					-0.03823717070042676
SADPDNLKY	9	Unmodified	_SADPDNLKY_					0	0	0		ENSG00000157106|ENST00000446231|SMG1	ENSG00000157106|ENST00000446231|SMG1	ENSG00000157106|ENST00000446231|SMG1	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1427612304688	2	511.743096	1021.47164	-0.7728	-0.00039548	0.21372	0.00010937	-0.55908	-0.00028611	511.7431858391547	31.588	0.65977	32.325	32.095	32.755	0.73692					34	12	4	0	0	0	0.16595	1	11159	11159		61.602	44.66	1	34104000			46280	6228	33706	33976	45216	45216					-0.03823717070042676
SADPGNLKY	9	Unmodified	_SADPGNLKY_					0	0	0		ENST00000522841.6_1_16:21481075-21531198:-|nuORF	ENST00000522841.6_1_16:21481075-21531198:-|nuORF	ENST00000522841.6_1_16:21481075-21531198:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	483.14019775390625	2	482.740357	963.46616	-0.34928	-0.00016861	-0.018964	-9.1548E-06	-0.36824	-0.00017776	482.74032762773055	31.338	0.76059	31.338	31.059	31.819	0					39	14	4	0	0	0	0.015356	2	10015	10015;10088		89.401	39.846	1	46699000			46281	13031	33707	33977	45217;45218	45217					-0.017033958618526412
SADPGNLKY	9	Unmodified	_SADPGNLKY_					0	0	0		ENST00000522841.6_1_16:21481075-21531198:-|nuORF	ENST00000522841.6_1_16:21481075-21531198:-|nuORF	ENST00000522841.6_1_16:21481075-21531198:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	483.1396179199219	2	482.740357	963.46616	-0.60571	-0.0002924	0.051605	2.4912E-05	-0.5541	-0.00026749	482.7403447144613	30.772	0.75871	31.491	31.216	31.974	0.71857					41	14	4	0	0	0	0.0094639	2	10803	10803;10848		106.94	51.437	1	40604000			46282	13031	33707	33977	45219;45220	45219					-0.017033958618526412
SADPPLPALEL	11	Unmodified	_SADPPLPALEL_					0	0	0		ENSG00000198944|ENST00000378693|SOWAHA	ENSG00000198944|ENST00000378693|SOWAHA	ENSG00000198944|ENST00000378693|SOWAHA	MULTI-SECPEP	A375_MHC_IP_R1	1	562.2055053710938	2	561.805697	1121.59684	-0.3396	-0.00019079	0.19291	0.00010838	-0.14668	-8.2408E-05	561.8058078240231	68.893	1.218	68.893	68.209	69.427	0					78	23	5	0	0	0	0.49142	1	24896	24896		47.749	5.9091	1	187370000			46283	9379	33708	33978	45221	45221					0.040905750663114304
SADPPLPALEL	11	Unmodified	_SADPPLPALEL_					0	0	0		ENSG00000198944|ENST00000378693|SOWAHA	ENSG00000198944|ENST00000378693|SOWAHA	ENSG00000198944|ENST00000378693|SOWAHA	MULTI-SECPEP	A375_MHC_IP_R2	2	561.4443359375	2	561.805697	1121.59684	-0.48829	-0.00027433	-0.020776	-1.1672E-05	-0.50907	-0.000286	561.8056642583222	68.054	1.2192	68.789	68.204	69.423	0.73511					81	23	5	0	0	0	0.28117	1	25881	25881		56.177	27.095	1	208850000			46284	9379	33708	33978	45222	45222					0.040905750663114304
SADQEEIEPP	10	Unmodified	_SADQEEIEPP_					0	0	0			REV__ODC1|p.V429I|1|0.09|ENSG00000115758|chr2:10440825-10440825|C/T|missense_variant	REV__ODC1|p.V429I|1|0.09|ENSG00000115758|chr2:10440825-10440825|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	557.1897583007812	2	557.748576	1113.4826	-1.419	-0.00079146	0.23736	0.00013239	-1.1817	-0.00065907	557.7486076677072	29.484	0.75779	30.183	29.981	30.739	0.69872					28	14	4	0	0	0	0.69833	1	10249	10249		13.042	0.80181	1	6410400	+		46285	27639	33709	33979	45223	45223					-0.06960359486402012
SADQFSLFE	9	Unmodified	_SADQFSLFE_					0	0	0			REV__ENSG00000184564|ENST00000647374|SLITRK6	REV__ENSG00000184564|ENST00000647374|SLITRK6	MULTI-SECPEP	A375_MHC_IP_R2	2	521.6646728515625	2	522.237647	1042.46074	-0.5257	-0.00027454	-3.0629	-0.0015996	-3.5886	-0.0018741	522.7373449231831	104.47	0.15376	105.23	105.16	105.31	0.76308					4	2	2	0	0	0	0.67483	1	39550	39550		20.454	0	1	473620	+		46286	21825	33710	33980	45224	45224					-0.05879119444330172
SADRNVKIW	9	Unmodified	_SADRNVKIW_					0	0	0		ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-MSMS	A375_MHC_IP_R1	1	363.9328918457031	3	363.533091	1087.57744	-0.10964	-3.9858E-05	0.43118	0.00015675	0.32154	0.00011689	363.5332077122353	36.615	0.71099	36.615	36.184	36.895	0					29	13	4	0	0	0	0.50355	1	12278	12278		19.626	3.8873	1	6720100			46287	1371	33711	33981	45225	45225					0.03715663566094918
SADSFQSFY	9	Unmodified	_SADSFQSFY_					0	0	0		ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	526.6218872070312	2	526.221997	1050.42944	-0.66802	-0.00035153	-0.49506	-0.00026051	-1.1631	-0.00061204	526.2218583809682	86.571	1.2666	86.571	86.022	87.289	0					49	24	3	0	0	0	0.28216	1	31683	31683		49.933	29.479	1	9490300			46288	4828	33712	33982	45226	45226					-0.09375692478397468
SADSFQSFY	9	Unmodified	_SADSFQSFY_					0	0	0		ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	MULTI-MSMS	A375_MHC_IP_R2	2	1051.8369140625	1	1051.43672	1050.42944	0.23032	0.00024217	-0.4897	-0.00051489	-0.25937	-0.00027272	1051.4360151605472	85.889	0.81304	86.622	86.236	87.049	0.733					36	15	3	0	0	0	0.0094735	1	32615	32615		107.1	63.241	1	13997000			46289	4828	33712	33982	45227	45227					-0.09375692478397468
SADSFQSFY	9	Unmodified	_SADSFQSFY_					0	0	0		ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	MULTI-MATCH	A375_MHC_IP_R1	1		1	1051.43672	1050.42944	-0.046432	-4.882E-05	-0.080811	-8.4968E-05	-0.12724	-0.00013379	1051.436687123026	86.469	0.70934	86.469	86.172	86.881	0	-0.07621	0.00013353	NaN	107.1	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13821000			46290	4828	33712	33982							-0.09375692478397468
SADSFQSFY	9	Unmodified	_SADSFQSFY_					0	0	0		ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	526.221997	1050.42944	-0.291	-0.00015313	-0.88532	-0.00046587	-1.1763	-0.000619	526.2216107761183	85.935	1.1213	86.668	86.236	87.357	0.733	0.048567	-0.00025766	NaN	65.235	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10130000			46291	4828	33712	33982							-0.09375692478397468
SAEDQRQLY	9	Unmodified	_SAEDQRQLY_					0	0	0		ENSG00000214415|ENST00000398291|GNAT3	ENSG00000214415|ENST00000398291|GNAT3	ENSG00000214415|ENST00000398291|GNAT3	MULTI-SECPEP	A375_MHC_IP_R1	1	554.9544677734375	2	555.264727	1108.5149	-0.80437	-0.00044664	1.3147	0.00073002	0.51036	0.00028339	555.2650206650591	41.189	0.75798	41.189	40.712	41.47	0					23	14	2	0	0	0	0.65246	1	14094	14094		10.824	0	1	3655500			46292	9617	33713	33983	45228	45228					-0.03501527292746687
SAEECKTNSHP	11	Unmodified	_SAEECKTNSHP_					0	0	0			REV__nc|ENSG00000197128|Q68DY9-2|ZNF772	REV__nc|ENSG00000197128|Q68DY9-2|ZNF772	MSMS	A375_MHC_IP_R1	1	601.6708374023438	2	601.758952	1201.50335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.49	1	59.49	58.99	59.99	0								0	0	0	0.15541	1	21399	21399		17.113	4.0704	1		+		46293	22259	33714	33984	45229	45229					-0.08934092378422065
SAEEIFESV	9	Unmodified	_SAEEIFESV_					0	0	0		LMAN1|p.P318S|1|0.35|ENSG00000074695|chr18:59345922-59345922|G/A|missense_variant	LMAN1|p.P318S|1|0.35|ENSG00000074695|chr18:59345922-59345922|G/A|missense_variant	LMAN1|p.P318S|1|0.35|ENSG00000074695|chr18:59345922-59345922|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	505.6628723144531	2	505.73748	1009.46041	-0.24654	-0.00012468	-0.65939	-0.00033348	-0.90593	-0.00045816	505.7367025258215	56.42	0.45611	56.42	56.092	56.548	0					14	8	2	0	0	0	0.46038	1	20255	20255		21.747	4.6338	1	1015400			46294	14302	33715	33985	45230	45230					-0.04394539164172784
SAEEIFESV	9	Unmodified	_SAEEIFESV_					0	0	0		LMAN1|p.P318S|1|0.35|ENSG00000074695|chr18:59345922-59345922|G/A|missense_variant	LMAN1|p.P318S|1|0.35|ENSG00000074695|chr18:59345922-59345922|G/A|missense_variant	LMAN1|p.P318S|1|0.35|ENSG00000074695|chr18:59345922-59345922|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	505.662841796875	2	505.73748	1009.46041	-0.8386	-0.00042411	-0.98424	-0.00049776	-1.8228	-0.00092188	505.73723087579236	55.866	0.45799	56.616	56.287	56.745	0.75015					14	8	2	0	0	0	0.46038	1	21056	21056		21.747	9.2151	1	1699000			46295	14302	33715	33985	45231	45231					-0.04394539164172784
SAEERMEEYKR	11	Unmodified	_SAEERMEEYKR_					0	0	0			REV__ENSG00000142347|ENST00000644032|MYO1F	REV__ENSG00000142347|ENST00000644032|MYO1F	MSMS	A375_MHC_IP_R1	1	476.5767517089844	3	476.557636	1426.65108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.43	1	51.43	50.93	51.93	0								0	0	0	0.16269	1	18256	18256		4.7159	0	1		+		46296	19306	33716	33986	45232	45232					-0.04518200844427156
SAEGWRVNTA	10	Unmodified	_SAEGWRVNTA_					0	0	0			REV__ENST00000357701.5_1_19:50957585-50958419:+|nuORF	REV__ENST00000357701.5_1_19:50957585-50958419:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	546.666015625	2	545.767437	1089.52032	-0.93864	-0.00051228	0.88804	0.00048466	-0.050608	-2.762E-05	545.7696010878708	51.152	1.0626	51.905	51.31	52.373	0.75355					52	20	4	0	0	0	0.65751	1	19195	19195		13.906	0	1	6781500	+		46297	23845	33717	33987	45233	45233					-0.02085803710269829
SAELRRDKVQ	10	Unmodified	_SAELRRDKVQ_					0	0	0			REV__ENSG00000100154|ENST00000397906|TTC28	REV__ENSG00000100154|ENST00000397906|TTC28	MULTI-SECPEP	A375_MHC_IP_R1	1	600.7011108398438	2	601.336018	1200.65748	-0.39485	-0.00023744	1.9103	0.0011487	1.5155	0.0009113	601.3371510593647	64.267	0.45461	64.267	63.99	64.444	0					10	8	2	0	0	0	0.87163	1	23192	23192		2.9952	1.8019	1	1533500	+		46298	17054	33718	33988	45234	45234					0.06518105169266164
SAELRRDKVQ	10	Unmodified	_SAELRRDKVQ_					0	0	0			REV__ENSG00000100154|ENST00000397906|TTC28	REV__ENSG00000100154|ENST00000397906|TTC28	MULTI-MATCH	A375_MHC_IP_R2	2		2	601.336018	1200.65748	-0.44274	-0.00026624	2.3829	0.0014329	1.9402	0.0011667	601.3373051615381	63.384	0.25468	64.125	63.936	64.191	0.74022	-0.071278	0.00010918	NaN	2.9952	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1031000	+		46299	17054	33718	33988							0.06518105169266164
SAELRRGTVC	10	Unmodified	_SAELRRGTVC_					0	0	0		ENST00000304916.3_1_8:127568411-127568705:-|nuORF	ENST00000304916.3_1_8:127568411-127568705:-|nuORF	ENST00000304916.3_1_8:127568411-127568705:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	546.666015625	2	546.28494	1090.55533	-0.91227	-0.00049836	-1.8025	-0.00098469	-2.7148	-0.0014831	546.2845880577403	51.114	0.45524	51.868	51.564	52.019	0.75406					14	8	3	0	0	0	0.87163	1	19195	19195		19.257	1.1106	1	1488400			46300	10564	33719	33989	45235	45235					0.013671158260194716
SAESHGEAFS	10	Unmodified	_SAESHGEAFS_					0	0	0			REV__ENSG00000168497|ENST00000304141|CAVIN2	REV__ENSG00000168497|ENST00000304141|CAVIN2	MULTI-SECPEP	A375_MHC_IP_R1	1	511.6142578125	2	511.214703	1020.41485	-0.48022	-0.0002455	1.0543	0.00053898	0.57408	0.00029348	511.21501435941263	60.828	0.40691	60.828	60.566	60.973	0					10	7	2	0	0	0	0.64716	1	21938	21938		17.113	7.039	1	1353000	+		46301	20861	33720	33990	45236	45236					-0.09453764626562133
SAFDHFASV	9	Unmodified	_SAFDHFASV_					0	0	0		ENST00000489675.1_1_1:54387326-54394129:-|nuORF;ENSG00000081870|ENST00000194214|IFT25	ENST00000489675.1_1_1:54387326-54394129:-|nuORF	ENST00000489675.1_1_1:54387326-54394129:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	491.1373291015625	2	490.727249	979.439946	-0.59903	-0.00029396	0.32102	0.00015753	-0.27801	-0.00013643	490.72728482495734	68.321	0.5582	68.321	68.057	68.616	0					19	10	3	0	0	0	0.018546	1	24783	24783		85.272	7.1226	1	1948300			46302	1747	33721	33991	45237	45237					-0.050596650333318394
SAFDHFASV	9	Unmodified	_SAFDHFASV_					0	0	0		ENST00000489675.1_1_1:54387326-54394129:-|nuORF;ENSG00000081870|ENST00000194214|IFT25	ENST00000489675.1_1_1:54387326-54394129:-|nuORF	ENST00000489675.1_1_1:54387326-54394129:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	491.127197265625	2	490.727249	979.439946	-0.51105	-0.00025079	-0.20242	-9.9335E-05	-0.71348	-0.00035012	490.72714144140116	67.561	0.55913	68.297	68.104	68.663	0.73631					14	10	2	0	0	0	0.040308	2	25622	25622;25649		68.081	6.7232	1	1844400			46303	1747	33721	33991	45238;45239	45238					-0.050596650333318394
SAFDNFKEV	9	Unmodified	_SAFDNFKEV_					0	0	0		ENSG00000157827|ENST00000288670|FMNL2;nc|ENSG00000157827|Q96PY5|FMNL2;ENST00000492942.1_1_2:153435413-153463948:+|nuORF	ENSG00000157827|ENST00000288670|FMNL2	ENSG00000157827|ENST00000288670|FMNL2	MULTI-SECPEP	A375_MHC_IP_R1	1	529.1532592773438	2	528.753464	1055.49238	-0.46035	-0.00024341	-0.10806	-5.7135E-05	-0.5684	-0.00030054	528.7536267714164	63.095	0.41102	63.095	62.863	63.274	0					13	7	2	0	0	0	0.50484	1	22785	22785		34.932	13.185	1	1704100			46304	6268	33722	33992	45240	45240					-0.03315126690381476
SAFFEVAW	8	Unmodified	_SAFFEVAW_					0	0	0			REV__ENSG00000116260|ENST00000367602|QSOX1	REV__ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	A375_MHC_IP_R2	2	479.1324768066406	2	478.729261	955.443968	-1.0193	-0.00048798	1.2714	0.00060866	0.2521	0.00012069	478.7305034117731	33.59	0.60876	34.342	33.891	34.5	0.75225					20	11	4	0	0	0	0.38921	2	12030	12030;12041		53.576	4.4497	1	4021600	+		46305	17952	33723	33993	45241;45242	45241					-0.03553575539626763
SAFFEVAW	8	Unmodified	_SAFFEVAW_					0	0	0			REV__ENSG00000116260|ENST00000367602|QSOX1	REV__ENSG00000116260|ENST00000367602|QSOX1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	478.729261	955.443968	-1.0193	-0.00048798	1.2714	0.00060866	0.2521	0.00012069	478.7305034117731	33.59	0.60876	34.342	33.891	34.5	0.75225	-0.0010537	-0.00049104	NaN	53.576	20	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4021600	+		46306	17952	33723	33993							-0.03553575539626763
SAFGGATMW	9	Unmodified	_SAFGGATMW_					0	0	0		nc|ENSG00000111666|Q8WUD6-2|CHPT1;ENSG00000111666|ENST00000229266|CHPT1	nc|ENSG00000111666|Q8WUD6-2|CHPT1	nc|ENSG00000111666|Q8WUD6-2|CHPT1	MULTI-MSMS	A375_MHC_IP_R2	2	927.306884765625	1	927.402915	926.395638	-0.082802	-7.6791E-05	-0.16728	-0.00015514	-0.25009	-0.00023193	927.4024811897068	99.349	0.51181	100.11	99.858	100.37	0.75977					15	9	2	0	0	0	0.0098409	1	37724	37724		115.69	69.671	1	3568300			46307	3009	33724	33994	45243	45243					-0.07050392451174048
SAFGGATMW	9	Unmodified	_SAFGGATMW_					0	0	0		nc|ENSG00000111666|Q8WUD6-2|CHPT1;ENSG00000111666|ENST00000229266|CHPT1	nc|ENSG00000111666|Q8WUD6-2|CHPT1	nc|ENSG00000111666|Q8WUD6-2|CHPT1	MULTI-MATCH	A375_MHC_IP_R1	1		1	927.402915	926.395638	-0.050665	-4.6986E-05	-0.47223	-0.00043795	-0.5229	-0.00048494	927.4025896021027	100.15	0.55699	100.15	99.875	100.43	0	0.022017	-0.00019743	NaN	115.69	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3796600			46308	3009	33724	33994							-0.07050392451174048
SAFGNVKLV	9	Unmodified	_SAFGNVKLV_					0	0	0		ENSG00000164292|ENST00000379982|RHOBTB3;ENST00000504949.1_1_5:95067575-95091515:+|nuORF	ENSG00000164292|ENST00000379982|RHOBTB3	ENSG00000164292|ENST00000379982|RHOBTB3	MULTI-SECPEP	A375_MHC_IP_R1	1	468.1714172363281	2	467.77146	933.528367	-0.70025	-0.00032756	-3.1605	-0.0014784	-3.8608	-0.001806	467.7726780000015	68.169	0.65895	68.169	67.804	68.463	0					32	12	4	0	0	0	0.11711	1	24692	24692		69.105	25.247	1	3546800			46309	6813	33725	33995	45244	45244					0.05894375277136987
SAFKDQKHDLF	11	Unmodified	_SAFKDQKHDLF_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	A375_MHC_IP_R2	2	445.6423645019531	3	445.894577	1334.6619	-0.4655	-0.00020756	-0.1246	-5.556E-05	-0.5901	-0.00026312	445.8943317470048	41.628	0.50839	42.402	42.098	42.607	0.77451					16	9	2	0	0	0	1.0002	1	15486	15486		1.3296	0	1	3026700			46310	4973	33726	33996	45245	45245					0.007955695921964434
SAFLFVRDADP	11	Unmodified	_SAFLFVRDADP_					0	0	0		ENSG00000036448|ENST00000262113|MYOM2	ENSG00000036448|ENST00000262113|MYOM2	ENSG00000036448|ENST00000262113|MYOM2	MULTI-SECPEP	A375_MHC_IP_R1	1	412.6189880371094	3	413.211906	1236.61389	0.33773	0.00013955	0.18133	7.4927E-05	0.51906	0.00021448	413.2117924724585	40.475	0.61057	40.475	40.05	40.66	0					20	11	3	0	0	0	0.98968	1	13905	13905		9.7643	2.7272	1	3456300			46311	1137	33727	33997	45246	45246					0.005044956721349081
SAFLRPLL	8	Unmodified	_SAFLRPLL_					0	0	0		ENST00000256442.9_1_5:68462964-68463831:+|nuORF	ENST00000256442.9_1_5:68462964-68463831:+|nuORF	ENST00000256442.9_1_5:68462964-68463831:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	459.18414306640625	2	458.78437	915.554188	-0.17712	-8.1261E-05	0.12721	5.8364E-05	-0.049907	-2.2897E-05	458.7843754553337	33.773	0.40283	33.773	33.547	33.95	0					11	7	2	0	0	0	0.86765	1	11070	11070		24.674	0	1	3525600			46312	10238	33728	33998	45247	45247					0.09303269519409696
SAFLTVLPDPK	11	Unmodified	_SAFLTVLPDPK_					0	0	0		ENSG00000127418|ENST00000510644|FGFRL1	ENSG00000127418|ENST00000510644|FGFRL1	ENSG00000127418|ENST00000510644|FGFRL1	MSMS	A375_MHC_IP_R2	2	396.5962219238281	3	396.560535	1186.65977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.543	1	26.198	25.698	26.698	0.65467								0	0	0	0.16111	1	8548	8548		12.929	3.3847	1				46313	4089	33729	33999	45248	45248					0.07391140854360856
SAFNERFKK	9	Unmodified	_SAFNERFKK_					0	0	0			REV__ITGA4|p.G192R|1|0.3|ENSG00000115232|chr2:181478774-181478774|G/A|missense_variant	REV__ITGA4|p.G192R|1|0.3|ENSG00000115232|chr2:181478774-181478774|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	563.1580810546875	2	563.803823	1125.59309	-0.51457	-0.00029012	2.0073	0.0011317	1.4927	0.00084159	564.3079531718746	82.692	0.50418	83.435	83.144	83.648	0.74294					14	9	3	0	0	0	0.71341	1	31384	31384		13.042	0	1	1482600	+		46314	26800	33730	34000	45249	45249					0.035319500831292316
SAFNFFHCL	9	Unmodified	_SAFNFFHCL_					0	0	0			REV__GPRC6A|p.L642F|1|0.35|ENSG00000173612|chr6:116792999-116792999|G/A|missense_variant	REV__GPRC6A|p.L642F|1|0.35|ENSG00000173612|chr6:116792999-116792999|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	543.1350708007812	2	543.247295	1084.48004	-0.46798	-0.00025423	0.491	0.00026674	0.023026	1.2509E-05	543.2474885082638	105.54	0.81197	105.54	105.25	106.06	0					20	15	2	0	0	0	0.74651	1	38709	38709		0.52476	0	1	1093100	+		46315	26705	33731	34001	45250	45250					-0.058824416344123165
SAFPEVRSL	9	Unmodified	_SAFPEVRSL_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA;ENST00000485018.1_1_2:43519181-43520149:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-SECPEP	A375_MHC_IP_R1	1	502.67437744140625	2	503.271824	1004.5291	-0.50342	-0.00025336	0.20246	0.00010189	-0.30096	-0.00015146	503.27177972691027	65.609	0.96725	65.609	65.206	66.173	0					68	18	6	0	0	0	0.062502	1	23696	23696		65.474	32.029	1	89182000			46316	3357	33732	34002	45251	45251					0.027011699261947797
SAFPEVRSL	9	Unmodified	_SAFPEVRSL_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA;ENST00000485018.1_1_2:43519181-43520149:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-SECPEP	A375_MHC_IP_R2	2	502.67449951171875	2	503.271824	1004.5291	-0.65074	-0.0003275	0.096635	4.8634E-05	-0.5541	-0.00027886	503.2717633624368	64.808	0.91457	65.546	65.155	66.069	0.73811					70	17	5	0	0	0	0.049608	1	24515	24515		75.571	31.712	1	82158000			46317	3357	33732	34002	45252	45252					0.027011699261947797
SAFPFPVTV	9	Unmodified	_SAFPFPVTV_					0	0	0		ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	MULTI-MSMS	A375_MHC_IP_R2	2	483.1597595214844	2	482.760561	963.506569	-0.65073	-0.00031415	-0.9774	-0.00047185	-1.6281	-0.00078599	482.7599920880952	128.4	0.20509	128.64	128.5	128.71	0.23946					5	3	2	0	0	0	0.0097266	1	50442	50442		111.29	43.206	1	4510600			46318	4095	33733	34003	45253	45253					0.02335570528578046
SAFPYAHRF	9	Unmodified	_SAFPYAHRF_					0	0	0		ENSG00000127125|ENST00000372561|PPCS;ENST00000471420.1_1_1:42922476-42938912:+|nuORF;ENST00000472013.1_1_1:42922230-42922863:+|nuORF	ENSG00000127125|ENST00000372561|PPCS	ENSG00000127125|ENST00000372561|PPCS	MULTI-SECPEP	A375_MHC_IP_R1	1	366.2507629394531	3	365.850531	1094.52976	0.69438	0.00025404	-0.090567	-3.3134E-05	0.60382	0.00022091	365.85050509842	44.646	0.45766	44.646	44.42	44.878	0					16	8	3	0	0	0	0.57304	1	15602	15602		29.841	19.767	1	3871600			46319	4078	33734	34004	45254	45254					-0.013719906341293608
SAFPYAHRF	9	Unmodified	_SAFPYAHRF_					0	0	0		ENSG00000127125|ENST00000372561|PPCS;ENST00000471420.1_1_1:42922476-42938912:+|nuORF;ENST00000472013.1_1_1:42922230-42922863:+|nuORF	ENSG00000127125|ENST00000372561|PPCS	ENSG00000127125|ENST00000372561|PPCS	MULTI-SECPEP	A375_MHC_IP_R2	2	366.2506408691406	3	365.850531	1094.52976	0.2723	9.9621E-05	0.056799	2.078E-05	0.3291	0.0001204	365.8505428299385	43.786	0.45325	44.555	44.329	44.782	0.7691					20	8	3	0	0	0	0.57304	1	16353	16353		29.841	23.21	1	3484000			46320	4078	33734	34004	45255	45255					-0.013719906341293608
SAFRLLQRS	9	Unmodified	_SAFRLLQRS_					0	0	0			REV__ENST00000473014.1_1_1:43783488-43785201:+|nuORF	REV__ENST00000473014.1_1_1:43783488-43785201:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	360.2611083984375	3	359.876969	1076.60908	0.085852	3.0896E-05	-0.32093	-0.00011549	-0.23507	-8.4598E-05	359.8767363452609	28.33	0.25239	28.33	28.188	28.44	0					11	4	3	0	0	0	0.52905	1	8725	8725		18.373	4.7582	1	3471800	+		46321	16508	33735	34005	45256	45256					0.07383656320052978
SAFRLLQRS	9	Unmodified	_SAFRLLQRS_					0	0	0			REV__ENST00000473014.1_1_1:43783488-43785201:+|nuORF	REV__ENST00000473014.1_1_1:43783488-43785201:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	539.7114868164062	2	539.311815	1076.60908	-0.68211	-0.00036787	0.19589	0.00010565	-0.48622	-0.00026222	539.3117020905073	28.364	0.3534	28.364	28.188	28.541	0					15	6	3	0	0	0	0.75164	1	8767	8767		13.906	0	1	9481800	+		46322	16508	33735	34005	45257	45257					0.07383656320052978
SAFRLLQRS	9	Unmodified	_SAFRLLQRS_					0	0	0			REV__ENST00000473014.1_1_1:43783488-43785201:+|nuORF	REV__ENST00000473014.1_1_1:43783488-43785201:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	539.6871948242188	2	539.311815	1076.60908	-0.82637	-0.00044567	0.15695	8.4644E-05	-0.66942	-0.00036102	539.311785940998	27.633	0.40415	28.311	28.098	28.502	0.67857					17	7	3	0	0	0	0.75164	1	9501	9501		13.906	0	1	8734600	+		46323	16508	33735	34005	45258	45258					0.07383656320052978
SAFTGQQGY	9	Unmodified	_SAFTGQQGY_					0	0	0		ENSG00000133872|ENST00000256255|SARAF;nc|ENSG00000133872|Q96BY9-2|SARAF	ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	MULTI-SECPEP	A375_MHC_IP_R1	1	480.116455078125	2	479.716882	957.41921	-0.76388	-0.00036644	0.3163	0.00015173	-0.44758	-0.00021471	479.71697391058746	41.591	0.71684	41.591	41.215	41.932	0					25	13	3	0	0	0	0.0020843	1	14367	14367		168.66	60.662	1	6334400			46324	4535	33736	34006	45259	45259					-0.061202554129977216
SAFTGQQGY	9	Unmodified	_SAFTGQQGY_					0	0	0		ENSG00000133872|ENST00000256255|SARAF;nc|ENSG00000133872|Q96BY9-2|SARAF	ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	MULTI-MSMS	A375_MHC_IP_R2	2	480.116455078125	2	479.716882	957.41921	-0.77924	-0.00037381	-0.024799	-1.1896E-05	-0.80404	-0.00038571	479.7167922860303	40.943	0.71213	41.718	41.285	41.997	0.77451					21	13	2	0	0	0	0.0017027	1	15148	15148		147.06	34.466	1	5463700			46325	4535	33736	34006	45260	45260					-0.061202554129977216
SAGDNERTV	9	Unmodified	_SAGDNERTV_					0	0	0			REV__CADM3|p.D202N|2|0.74|ENSG00000162706|chr1:159193953-159193953|G/A|missense_variant	REV__CADM3|p.D202N|2|0.74|ENSG00000162706|chr1:159193953-159193953|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	475.122314453125	2	474.722695	947.430838	-0.51012	-0.00024216	-0.3801	-0.00018044	-0.89021	-0.0004226	474.7225104456237	50.581	0.55829	50.581	50.357	50.915	0					22	10	3	0	0	0	0.63811	1	17910	17910		12.532	1.0368	1	5652900	+		46326	15560	33737	34007	45261	45261					-0.04498058389663129
SAGDNERTV	9	Unmodified	_SAGDNERTV_					0	0	0			REV__CADM3|p.D202N|2|0.74|ENSG00000162706|chr1:159193953-159193953|G/A|missense_variant	REV__CADM3|p.D202N|2|0.74|ENSG00000162706|chr1:159193953-159193953|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	475.1220703125	2	474.722695	947.430838	-0.79926	-0.00037943	-0.20469	-9.7173E-05	-1.004	-0.0004766	474.72255838278846	49.87	0.61039	50.624	50.294	50.904	0.75406					26	11	3	0	0	0	0.63811	1	18715	18715		12.532	1.7076	1	6348700	+		46327	15560	33737	34007	45262	45262					-0.04498058389663129
SAGDSHTAAF	10	Unmodified	_SAGDSHTAAF_					0	0	0		RCC1|p.L134F|1|0.22|ENSG00000180198|chr1:28532309-28532309|C/T|missense_variant	RCC1|p.L134F|1|0.22|ENSG00000180198|chr1:28532309-28532309|C/T|missense_variant	RCC1|p.L134F|1|0.22|ENSG00000180198|chr1:28532309-28532309|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	482.6116027832031	2	482.211963	962.409374	-0.21573	-0.00010403	-0.39592	-0.00019092	-0.61165	-0.00029494	482.2117106759863	35.804	0.71264	35.804	35.676	36.389	0					20	13	2	0	0	0	0.53946	1	11963	11963		25.399	25.399	1	7402600			46328	15274	33738	34008	45263	45263					-0.07333443418372099
SAGDSHTAAF	10	Unmodified	_SAGDSHTAAF_					0	0	0		RCC1|p.L134F|1|0.22|ENSG00000180198|chr1:28532309-28532309|C/T|missense_variant	RCC1|p.L134F|1|0.22|ENSG00000180198|chr1:28532309-28532309|C/T|missense_variant	RCC1|p.L134F|1|0.22|ENSG00000180198|chr1:28532309-28532309|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	482.6114807128906	2	482.211963	962.409374	-0.79981	-0.00038568	0.16094	7.7607E-05	-0.63888	-0.00030807	482.2120453808784	35.072	0.75713	35.835	35.576	36.333	0.76338					23	14	2	0	0	0	0.53946	1	12674	12674		25.399	25.399	1	6817200			46329	15274	33738	34008	45264	45264					-0.07333443418372099
SAGDSHTAAF	10	Unmodified	_SAGDSHTAAF_					0	0	0		RCC1|p.L134F|1|0.22|ENSG00000180198|chr1:28532309-28532309|C/T|missense_variant	RCC1|p.L134F|1|0.22|ENSG00000180198|chr1:28532309-28532309|C/T|missense_variant	RCC1|p.L134F|1|0.22|ENSG00000180198|chr1:28532309-28532309|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	482.211963	962.409374	-0.21573	-0.00010403	-0.39592	-0.00019092	-0.61165	-0.00029494	482.2117106759863	35.804	0.71264	35.804	35.676	36.389	0	-0.015966	-0.00025921	NaN	25.399	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7402600			46330	15274	33738	34008							-0.07333443418372099
SAGDSHTAAF	10	Unmodified	_SAGDSHTAAF_					0	0	0		RCC1|p.L134F|1|0.22|ENSG00000180198|chr1:28532309-28532309|C/T|missense_variant	RCC1|p.L134F|1|0.22|ENSG00000180198|chr1:28532309-28532309|C/T|missense_variant	RCC1|p.L134F|1|0.22|ENSG00000180198|chr1:28532309-28532309|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	482.211963	962.409374	-0.79981	-0.00038568	0.16094	7.7607E-05	-0.63888	-0.00030807	482.2120453808784	35.072	0.75713	35.835	35.576	36.333	0.76338	0.015966	0.00027784	NaN	25.399	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6817200			46331	15274	33738	34008							-0.07333443418372099
SAGGAGHG	8	Unmodified	_SAGGAGHG_					0	0	0			REV__AMY1C|p.R318Q|1|0.11|ENSG00000187733|chr1:103754573-103754573|G/A|missense_variant	REV__AMY1C|p.R318Q|1|0.11|ENSG00000187733|chr1:103754573-103754573|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	612.64208984375	1	613.268864	612.261587	-0.34155	-0.00020946	3.8341	0.0023514	3.4926	0.0021419	613.2722101797215	73.766	0.15273	73.766	73.69	73.843	0					4	2	2	0	0	0	0.972	1	26884	26884		0	0	1	767980	+	+	46332	15391	33739	34009	45265	45265					-0.06005290161704124
SAGGAGHG	8	Unmodified	_SAGGAGHG_					0	0	0			REV__AMY1C|p.R318Q|1|0.11|ENSG00000187733|chr1:103754573-103754573|G/A|missense_variant	REV__AMY1C|p.R318Q|1|0.11|ENSG00000187733|chr1:103754573-103754573|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	614.2433471679688	1	613.268864	612.261587	-0.37984	-0.00023294	0.44707	0.00027417	0.067231	4.1231E-05	613.273284851356	140.85	1.9967	140.89	140.04	142.04	0.04216					68	38	3	0	0	0	0.77861	1	54922	54922		0	0	1	2233000	+	+	46333	15391	33739	34009	45266	45266					-0.06005290161704124
SAGHWTSES	9	Unmodified	_SAGHWTSES_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-MSMS	A375_MHC_IP_R1	1	481.60369873046875	2	481.204138	960.393724	-0.24767	-0.00011918	-0.40473	-0.00019476	-0.6524	-0.00031394	481.2039194484359	35.844	0.71264	35.844	35.676	36.389	0					21	13	2	0	0	0	0.46038	2	11962	11962;12006		21.747	15.847	1	5325000			46334	7616	33740	34010	45267;45268	45267					-0.0880572993540909
SAGIHVLF	8	Unmodified	_SAGIHVLF_					0	0	0		ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	MULTI-SECPEP	A375_MHC_IP_R1	1	422.1402587890625	2	422.239796	842.465038	0.10676	4.5078E-05	-1.0553	-0.0004456	-0.94858	-0.00040053	422.2393413385205	42.474	1.0112	42.474	41.88	42.891	0					29	19	3	0	0	0	0.93416	1	14547	14547		5.2307	0	1	3883500			46335	1749	33741	34011	45269	45269					0.037504345598904365
SAGIPVAGYVF	11	Unmodified	_SAGIPVAGYVF_					0	0	0			REV__ENSG00000261609|ENST00000648994|GAN	REV__ENSG00000261609|ENST00000648994|GAN	MULTI-SECPEP	A375_MHC_IP_R2	2	540.184814453125	2	540.78985	1079.56515	-1.1636	-0.00062926	-2.0148	-0.0010896	-3.1784	-0.0017189	540.7889554703629	58.624	0.71288	59.373	58.879	59.592	0.74894					18	13	2	0	0	0	0.9754	1	22188	22188		12.241	1.4167	1	1909600	+		46336	22913	33742	34012	45270	45270					0.028546271030336356
SAGIYSILT	9	Unmodified	_SAGIYSILT_					0	0	0		tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	927.2042236328125	1	924.503674	923.496398	-0.081815	-7.5638E-05	-0.32656	-0.00030191	-0.40838	-0.00037755	924.5033184123344	99.549	1.8717	99.549	99.168	101.04	0					123	36	5	0	0	0	0.17328	1	36540	36540		39.957	1.9833	1	810370000			46337	29930	33743	34013	45271	45271					0.031589628033202644
SAGIYSILT	9	Unmodified	_SAGIYSILT_					0	0	0		tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	926.2301025390625	1	924.503674	923.496398	-0.20045	-0.00018532	-0.010032	-9.2747E-06	-0.21048	-0.00019459	924.5036243518541	98.72	1.8296	99.479	99.098	100.93	0.75977					116	35	5	0	0	0	0.077132	1	37847	37847		54.774	6.4277	1	732800000			46338	29930	33743	34013	45272	45272					0.031589628033202644
SAGNESAW	8	Unmodified	_SAGNESAW_					0	0	0			REV__nc|ENSG00000183576|Q86TU7-3|SETD3	REV__nc|ENSG00000183576|Q86TU7-3|SETD3	MULTI-SECPEP	A375_MHC_IP_R2	2	820.85595703125	1	821.342423	820.335146	-0.62247	-0.00051126	-2.5848	-0.002123	-3.2073	-0.0026343	821.3417980694597	114.82	0.30406	115.51	115.32	115.63	0.69					6	5	2	0	0	0	0.972	1	43257	43257		4.3292	3.7277	1	1538300	+		46339	21764	33744	34014	45273	45273					-0.0822078650990079
SAGNYYNQG	9	Unmodified	_SAGNYYNQG_					0	0	0		ENST00000489009.1_1_17:16120558-16137385:+|nuORF;ENST00000607144.4_1_17:16120540-16203322:+|nuORF;nc|ENSG00000108474|Q9Y2B2-2|PIGL;ENST00000498772.6_1_17:16120540-16220082:+|nuORF;ENSG00000108474|ENST00000225609|PIGL	ENST00000489009.1_1_17:16120558-16137385:+|nuORF	ENST00000489009.1_1_17:16120558-16137385:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	972.7195434570312	1	973.401	972.393724	0.24012	0.00023374	0.85439	0.00083166	1.0945	0.0010654	973.4022956590768	118.23	0.65801	118.23	117.66	118.32	0					15	12	2	0	0	0	0.73363	1	43284	43284		3.5965	3.5965	1	12887000			46340	2805	33745	34015	45274	45274					-0.09357729935425141
SAGPANTQGAY	11	Unmodified	_SAGPANTQGAY_					0	0	0		ENSG00000105127|ENST00000269701|AKAP8;ENST00000595416.1_1_19:15484595-15489930:-|nuORF	ENSG00000105127|ENST00000269701|AKAP8	ENSG00000105127|ENST00000269701|AKAP8	MULTI-MSMS	A375_MHC_IP_R2	2	519.1868896484375	2	518.738345	1035.46214	-1.0195	-0.00052885	-1.4249	-0.00073915	-2.4444	-0.001268	518.7382689220403	34.159	3.4486	34.911	32.975	36.424	0.75225					158	67	4	0	0	0	0.73332	1	12867	12867		5.7319	0.97584	1	66591000			46341	2567	33746	34016	45275	45275					-0.05417485355565077
SAGPLHQL	8	Unmodified	_SAGPLHQL_					0	0	0		ENSG00000143570|ENST00000356205|SLC39A1;nc|ENSG00000143570|Q9NY26-2|SLC39A1;ENST00000426397.1_1_22:30836103-30836226:+|nuORF	ENSG00000143570|ENST00000356205|SLC39A1	ENSG00000143570|ENST00000356205|SLC39A1	MULTI-MSMS	A375_MHC_IP_R2	2	412.12689208984375	2	411.727052	821.439552	-0.16534	-6.8075E-05	0.038675	1.5923E-05	-0.12666	-5.2151E-05	411.72708518442846	35.813	0.407	36.576	36.283	36.69	0.76338					13	7	2	0	0	0	0.69583	1	13040	13040		36.044	5.8194	1	2040100			46342	5410	33747	34017	45276	45276					0.021689600374770635
SAGQTAIEAFV	11	Unmodified	_SAGQTAIEAFV_					0	0	0		nc|ENSG00000140839|Q6UXF7-2|CLEC18B;ENSG00000140839|ENST00000682950|CLEC18B;nc|ENSG00000140839|Q6UXF7|CLEC18B	nc|ENSG00000140839|Q6UXF7-2|CLEC18B	nc|ENSG00000140839|Q6UXF7-2|CLEC18B	MULTI-SECPEP	A375_MHC_IP_R2	2	547.4256591796875	2	547.279846	1092.54514	-0.69459	-0.00038014	-0.66428	-0.00036355	-1.3589	-0.00074368	547.2788019539968	84.357	0.96613	85.093	84.659	85.626	0.73609					32	18	3	0	0	0	0.92392	1	32021	32021		12.873	1.3779	1	2971600			46343	5188	33748	34018	45277	45277					0.002568313724395921
SAGSMGPRGP	10	Unmodified	_SAGSMGPRGP_					0	0	0		ENSG00000082293|ENST00000620364|COL19A1	ENSG00000082293|ENST00000620364|COL19A1	ENSG00000082293|ENST00000620364|COL19A1	MSMS	A375_MHC_IP_R1	1	458.6194763183594	2	458.718901	915.42325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.352	1	36.352	35.852	36.852	0								0	0	0	0.15207	1	12162	12162		13.906	2.2658	1				46344	1757	33749	34019	45278	45278					-0.03784489190923068
SAGSSLASSPQ	11	Unmodified	_SAGSSLASSPQ_					0	0	0		ENSG00000102385|ENST00000395209|DRP2;nc|ENSG00000102385|Q13474-2|DRP2	ENSG00000102385|ENST00000395209|DRP2	ENSG00000102385|ENST00000395209|DRP2	MSMS	A375_MHC_IP_R1	1	496.166015625	2	496.238178	990.461803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.021	1	65.021	64.521	65.521	0								0	0	0	0.15694	1	23536	23536		16.149	0.90062	1				46345	2376	33750	34020	45279	45279					-0.033809050754143755
SAGVGNWG	8	Unmodified	_SAGVGNWG_					0	0	0			REV__ENSG00000074842|ENST00000262947|MYDGF	REV__ENSG00000074842|ENST00000262947|MYDGF	MULTI-SECPEP	A375_MHC_IP_R1	1	746.815673828125	1	747.342029	746.334752	-0.43025	-0.00032154	-0.50255	-0.00037557	-0.9328	-0.00069712	747.3386726477734	125.78	0.25156	125.78	125.6	125.85	0					5	4	2	0	0	0	0.95423	1	47888	47888		7.9102	3.9658	1	9127000	+		46346	16643	33751	34021	45280	45280					-0.04856161439090556
SAGVSYSKA	9	Unmodified	_SAGVSYSKA_					0	0	0			REV__ENST00000537641.5_1_11:61178417-61183276:-|nuORF	REV__ENST00000537641.5_1_11:61178417-61183276:-|nuORF	MSMS	A375_MHC_IP_R1	1	435.2823486328125	2	435.2218	868.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.031	1	54.031	53.531	54.531	0								0	0	0	0.15486	1	19277	19277		6.7232	0.96273	1		+		46347	19687	33752	34022	45281	45281					-0.01043067407624676
SAGYYLHYSPS	11	Unmodified	_SAGYYLHYSPS_					0	0	0			REV__nc|ENSG00000159216|Q01196-11|RUNX1	REV__nc|ENSG00000159216|Q01196-11|RUNX1	MULTI-SECPEP	A375_MHC_IP_R1	1	415.13214111328125	3	415.524261	1243.55095	-0.034163	-1.4196E-05	0.44734	0.00018588	0.41318	0.00017169	415.5244923133956	30.397	0.45227	30.397	30.251	30.703	0					12	8	2	0	0	0	0.99681	1	9762	9762		1.1098	0.48293	1	1960800	+		46348	20105	33753	34023	45282	45282					-0.061080701159198725
SAHIERFI	8	Unmodified	_SAHIERFI_					0	0	0			REV__ENSG00000126895|ENST00000646375|AVPR2	REV__ENSG00000126895|ENST00000646375|AVPR2	MULTI-MSMS	A375_MHC_IP_R1	1	487.16552734375	2	486.766709	971.518865	-0.059788	-2.9103E-05	-0.50473	-0.00024569	-0.56452	-0.00027479	486.76635599398844	53.956	0.96165	53.956	53.605	54.567	0					42	18	3	0	0	0	0.73946	1	19385	19385		23.148	0	1	21234000	+		46349	18406	33754	34024	45283	45283					0.03196606991616591
SAIASVRELL	10	Unmodified	_SAIASVRELL_					0	0	0			REV__nc|ENSG00000188986|Q8WX92|NELFB	REV__nc|ENSG00000188986|Q8WX92|NELFB	MULTI-SECPEP	A375_MHC_IP_R1	1	529.9624633789062	2	529.813856	1057.61316	-0.3072	-0.00016276	0.86706	0.00045938	0.55986	0.00029662	529.813843758565	45.509	0.25223	45.509	45.384	45.636	0					6	4	2	0	0	0	0.91909	1	15951	15951		5.7319	2.4505	1	968330	+		46350	22129	33755	34025	45284	45284					0.08665701023096517
SAIDEELDIR	10	Unmodified	_SAIDEELDIR_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF	ENST00000573023.6_1_16:67984709-67996179:-|nuORF	ENST00000573023.6_1_16:67984709-67996179:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	387.92919921875	3	387.531304	1159.57208	-0.2364	-9.1612E-05	-2.9369	-0.0011381	-3.1733	-0.0012298	387.52939709102077	65.261	0.50729	65.999	65.715	66.222	0.73811					28	9	4	0	0	0	0.49952	1	24768	24768		28.234	4.2695	1	2192300			46351	13622	33756	34026	45285	45285					-0.0013210480703946814
SAIDFYRKF	9	Unmodified	_SAIDFYRKF_					0	0	0		ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	MULTI-SECPEP	A375_MHC_IP_R1	1	383.2696228027344	3	382.869591	1145.58694	0.14906	5.707E-05	0.41601	0.00015928	0.56507	0.00021635	382.86972513805216	66.049	1.5279	66.049	65.666	67.194	0					79	29	5	0	0	0	0.36673	1	23862	23862		45.74	34.94	1	49117000			46352	3726	33757	34027	45286	45286					0.01997431851600595
SAIDFYRKF	9	Unmodified	_SAIDFYRKF_					0	0	0		ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	MULTI-SECPEP	A375_MHC_IP_R1	1	573.127685546875	2	573.800749	1145.58694	-0.38475	-0.00022077	0.50141	0.00028771	0.11666	6.6941E-05	573.8009852186257	66.047	0.60936	66.047	65.717	66.326	0					34	11	4	0	0	0	0.16237	1	23893	23893		43.772	19.752	1	16602000			46353	3726	33757	34027	45287	45287					0.01997431851600595
SAIDFYRKF	9	Unmodified	_SAIDFYRKF_					0	0	0		ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	MULTI-SECPEP	A375_MHC_IP_R2	2	383.26959228515625	3	382.869591	1145.58694	-0.19145	-7.33E-05	0.31367	0.00012009	0.12222	4.6793E-05	382.86968159567266	65.235	1.1691	65.973	65.613	66.782	0.73812					59	22	4	0	0	0	0.36673	1	24670	24670		45.74	27.367	1	42020000			46354	3726	33757	34027	45288	45288					0.01997431851600595
SAIDFYRKF	9	Unmodified	_SAIDFYRKF_					0	0	0		ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	MULTI-SECPEP	A375_MHC_IP_R2	2	574.2003784179688	2	573.800749	1145.58694	-0.32038	-0.00018383	-0.40478	-0.00023226	-0.72516	-0.0004161	573.8005499664924	65.25	0.66029	65.988	65.664	66.324	0.73811					39	12	5	0	0	0	0.040539	1	24691	24691		99.755	39.681	1	11815000			46355	3726	33757	34027	45289	45289					0.01997431851600595
SAIDHAGNY	9	Unmodified	_SAIDHAGNY_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MSMS	A375_MHC_IP_R1	1	474.1167297363281	2	474.214506	946.414459	-0.64735	-0.00030698	0.25169	0.00011936	-0.39565	-0.00018762	474.2146792337021	28.936	0.50622	28.936	28.643	29.149	0					14	9	2	0	0	0	0.64808	1	8939	8939		11.64	11.64	1	2718100			46356	4973	33758	34028	45290	45290					-0.06089139555763268
SAIFGSITPHF	11	Unmodified	_SAIFGSITPHF_					0	0	0			REV__AMBRA1|p.L110F|1|0.32|ENSG00000110497|chr11:46547163-46547163|G/A|missense_variant	REV__AMBRA1|p.L110F|1|0.32|ENSG00000110497|chr11:46547163-46547163|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	393.27294921875	3	392.873113	1175.59751	-0.30171	-0.00011853	0.58267	0.00022892	0.28096	0.00011038	392.8731619576813	44.992	0.50851	45.761	45.594	46.103	0.7691					11	9	2	0	0	0	0.84606	1	16830	16830		12.856	6.2325	1	2147300	+		46357	15386	33759	34029	45291	45291					0.016734145060127048
SAIFGSITPHF	11	Unmodified	_SAIFGSITPHF_					0	0	0			REV__AMBRA1|p.L110F|1|0.32|ENSG00000110497|chr11:46547163-46547163|G/A|missense_variant	REV__AMBRA1|p.L110F|1|0.32|ENSG00000110497|chr11:46547163-46547163|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	392.873113	1175.59751	0.24645	9.6825E-05	0.17658	6.9373E-05	0.42303	0.0001662	392.8732019018473	45.846	0.35549	45.846	45.585	45.941	0	0.042467	-0.00021146	NaN	12.856	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1359700	+		46358	15386	33759	34029							0.016734145060127048
SAIIIQRKW	9	Unmodified	_SAIIIQRKW_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	A375_MHC_IP_R2	2	372.6294860839844	3	372.229231	1113.66586	0.42944	0.00015985	-0.2548	-9.4844E-05	0.17464	6.5005E-05	372.22911255247806	45.512	0.45471	46.278	46.048	46.503	0.76519					17	8	3	0	0	0	0.65623	1	17041	17041		13.615	8.5673	1	3056300			46359	1407	33760	34030	45292	45292					0.11357703876569758
SAIIIQRKW	9	Unmodified	_SAIIIQRKW_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	A375_MHC_IP_R2	2	558.2708740234375	2	557.840208	1113.66586	-0.76877	-0.00042885	0.40306	0.00022484	-0.36571	-0.00020401	557.8406272805302	45.547	0.20289	46.312	46.15	46.353	0.76519					6	3	2	0	0	0	0.73926	1	16994	16994		18.146	5.1039	1	1230700			46360	1407	33760	34030	45293	45293					0.11357703876569758
SAIPHPLIM	9	Unmodified	_SAIPHPLIM_					0	0	0		ENST00000559016.1_1_15:49426483-49429634:-|nuORF;ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2	ENST00000559016.1_1_15:49426483-49429634:-|nuORF	ENST00000559016.1_1_15:49426483-49429634:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	490.17510986328125	2	489.775688	977.536823	-0.30196	-0.00014789	-0.16974	-8.3136E-05	-0.4717	-0.00023103	489.7756788668465	77.42	0.50664	77.42	77.184	77.69	0					16	9	2	0	0	0	0.060021	1	28250	28250		60.39	30.165	1	2837600			46361	7042	33761	34031	45294	45294					0.04715605922126542
SAIPHPLIM	9	Unmodified	_SAIPHPLIM_					0	0	0		ENST00000559016.1_1_15:49426483-49429634:-|nuORF;ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2	ENST00000559016.1_1_15:49426483-49429634:-|nuORF	ENST00000559016.1_1_15:49426483-49429634:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	490.1747741699219	2	489.775688	977.536823	-0.54525	-0.00026705	-0.44114	-0.00021606	-0.98639	-0.00048311	489.77546842865564	76.432	0.50821	77.173	76.893	77.401	0.74052					15	9	2	0	0	0	0.03497	1	29037	29037		70.716	32.564	1	3198500			46362	7042	33761	34031	45295	45295					0.04715605922126542
SAIQGDVRSMP	11	Unmodified	_SAIQGDVRSMP_					0	0	0		nc|ENSG00000173805|P54257-4|HAP1;nc|ENSG00000173805|P54257-3|HAP1;ENSG00000173805|ENST00000347901|HAP1;nc|ENSG00000173805|P54257|HAP1	nc|ENSG00000173805|P54257-4|HAP1	nc|ENSG00000173805|P54257-4|HAP1	MULTI-MSMS	A375_MHC_IP_R1	1	387.9293518066406	3	387.529129	1159.56556	0.055472	2.1497E-05	2.157	0.00083589	2.2124	0.00085738	387.52943006930957	66.059	0.50674	66.059	65.819	66.326	0					21	9	4	0	0	0	0.72869	1	23942	23942		5.5233	0	1	2365400			46363	14771	33762	34032	45296	45296					-0.007843212393936483
SAISSVRLY	9	Unmodified	_SAISSVRLY_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-SECPEP	A375_MHC_IP_R1	1	498.6794128417969	2	498.279649	994.544745	-0.39083	-0.00019474	-0.33253	-0.00016569	-0.72336	-0.00036043	498.2792892376346	60.504	0.61016	60.504	60.261	60.871	0					23	11	4	0	0	0	0.10495	1	21820	21820		65.474	37.845	1	4332500			46364	1156	33763	34033	45297	45297					0.04725456443247822
SAISSVRLY	9	Unmodified	_SAISSVRLY_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	A375_MHC_IP_R2	2	498.67913818359375	2	498.279649	994.544745	-0.89881	-0.00044786	-0.25425	-0.00012669	-1.1531	-0.00057455	498.2792463614031	59.654	0.80854	60.401	59.845	60.653	0.74714					24	15	3	0	0	0	0.015356	2	22571	22571;22594		89.401	39.468	1	3642100			46365	1156	33763	34033	45298;45299	45298					0.04725456443247822
SAITAIATSV	10	Unmodified	_SAITAIATSV_					0	0	0		ENSG00000139180|ENST00000266544|NDUFA9;ENST00000544679.1_1_12:4758292-4764109:+|nuORF;ENST00000396655.6_1_12:4758292-4777674:+|nuORF	ENSG00000139180|ENST00000266544|NDUFA9;ENST00000396655.6_1_12:4758292-4777674:+|nuORF	ENST00000396655.6_1_12:4758292-4777674:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	467.6659240722656	2	467.266207	932.517862	-0.063129	-2.9498E-05	-0.45211	-0.00021126	-0.51524	-0.00024076	467.2660040958368	35.702	0.46	35.702	35.522	35.982	0					12	8	2	0	0	0	0.52461	1	11928	11928		36.127	0	1	2777700			46366	5057;11493	33764	34034	45300	45300					0.04890347832065345
SAIVGFIY	8	Unmodified	_SAIVGFIY_					0	0	0		nc|ENSG00000114902|Q9Y6A9|SPCS1;ENSG00000114902|ENST00000619898|SPCS1;ENST00000448693.2_1_3:52740223-52740934:+|nuORF	nc|ENSG00000114902|Q9Y6A9|SPCS1	nc|ENSG00000114902|Q9Y6A9|SPCS1	MULTI-MSMS	A375_MHC_IP_R1	1	870.525634765625	1	869.476731	868.469455	-0.32962	-0.0002866	-0.10737	-9.3353E-05	-0.43699	-0.00037995	869.476518218919	119.16	1.116	119.16	118.78	119.89	0					48	21	4	0	0	0	0.16801	1	43884	43884		74.396	10.833	1	220360000			46367	3255	33765	34035	45301	45301					0.029958989828060112
SAIVGFIY	8	Unmodified	_SAIVGFIY_					0	0	0		nc|ENSG00000114902|Q9Y6A9|SPCS1;ENSG00000114902|ENST00000619898|SPCS1;ENST00000448693.2_1_3:52740223-52740934:+|nuORF	nc|ENSG00000114902|Q9Y6A9|SPCS1	nc|ENSG00000114902|Q9Y6A9|SPCS1	MULTI-MSMS	A375_MHC_IP_R2	2	435.6220703125	2	435.242004	868.469455	-0.17102	-7.4435E-05	0.7978	0.00034724	0.62678	0.0002728	435.24219697406386	118.26	0.35603	118.87	118.69	119.05	0.60909					8	6	2	0	0	0	0.73946	1	44948	44948		23.148	3.7094	1	3976500			46368	3255	33765	34035	45302	45302					0.029958989828060112
SAIVGFIY	8	Unmodified	_SAIVGFIY_					0	0	0		nc|ENSG00000114902|Q9Y6A9|SPCS1;ENSG00000114902|ENST00000619898|SPCS1;ENST00000448693.2_1_3:52740223-52740934:+|nuORF	nc|ENSG00000114902|Q9Y6A9|SPCS1	nc|ENSG00000114902|Q9Y6A9|SPCS1	MULTI-MATCH	A375_MHC_IP_R2	2		1	869.476731	868.469455	-0.4786	-0.00041613	0.62827	0.00054626	0.14966	0.00013013	869.4771142079088	118.26	1.0117	118.87	118.49	119.5	0.60909	-0.14322	0.00044232	NaN	74.396	45	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181220000			46369	3255	33765	34035							0.029958989828060112
SAIVSLARSHV	11	Unmodified	_SAIVSLARSHV_					0	0	0		ENSG00000169918|ENST00000307050|OTUD7A;nc|ENSG00000169918|Q8TE49|OTUD7A	ENSG00000169918|ENST00000307050|OTUD7A	ENSG00000169918|ENST00000307050|OTUD7A	MULTI-MSMS	A375_MHC_IP_R1	1	570.7607421875	2	570.330205	1138.64586	-0.65358	-0.00037276	-0.068469	-3.905E-05	-0.72205	-0.00041181	570.330020412183	149.65	0.94484	149.65	149.06	150	0					71	41	2	0	0	0	0.73809	1	57157	57157		1.1933	0	1	154310			46370	7451	33766	34036	45303	45303					0.08207908145936926
SAKDYFFKA	9	Unmodified	_SAKDYFFKA_					0	0	0		ENST00000472855.5_1_20:23360446-23370651:-|nuORF;nc|ENSG00000125814|Q9H115-3|NAPB;nc|ENSG00000125814|Q9H115-2|NAPB;ENSG00000105402|ENST00000263354|NAPA;ENSG00000125814|ENST00000377026|NAPB	ENST00000472855.5_1_20:23360446-23370651:-|nuORF	ENST00000472855.5_1_20:23360446-23370651:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	359.91845703125	3	359.518559	1075.53385	0.36542	0.00013137	-0.24602	-8.845E-05	0.11939	4.2924E-05	359.51843555556593	45.515	0.55452	45.515	45.234	45.789	0					29	10	4	0	0	0	0.068071	1	15919	15919		53.47	41.295	1	10022000			46371	2602	33767	34037	45304	45304					-0.0008994593106308457
SAKDYFFKA	9	Unmodified	_SAKDYFFKA_					0	0	0		ENST00000472855.5_1_20:23360446-23370651:-|nuORF;nc|ENSG00000125814|Q9H115-3|NAPB;nc|ENSG00000125814|Q9H115-2|NAPB;ENSG00000105402|ENST00000263354|NAPA;ENSG00000125814|ENST00000377026|NAPB	ENST00000472855.5_1_20:23360446-23370651:-|nuORF	ENST00000472855.5_1_20:23360446-23370651:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	359.9183349609375	3	359.518559	1075.53385	-0.30144	-0.00010837	-0.076099	-2.7359E-05	-0.37754	-0.00013573	359.5184905169665	44.621	0.56021	45.39	45.138	45.698	0.7691					25	10	3	0	0	0	0.056914	1	16653	16653		57.108	42.15	1	7087100			46372	2602	33767	34037	45305	45305					-0.0008994593106308457
SAKFEKSKRT	10	Unmodified	_SAKFEKSKRT_					0	0	0			REV__ENST00000485752.1_1_2:101888144-101889379:-|nuORF	REV__ENST00000485752.1_1_2:101888144-101889379:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	393.95574951171875	3	394.559417	1180.65642	-0.26926	-0.00010624	1.2804	0.0005052	1.0111	0.00039896	394.55987960760285	23.713	0.45743	23.713	23.533	23.991	0					13	8	2	0	0	0	0.94269	1	6537	6537		5.7834	3.1522	1	3997300	+		46373	24628	33768	34038	45306	45306					0.0733189080037846
SAKKKSIRVI	10	Unmodified	_SAKKKSIRVI_					0	0	0		SLC3A2-GRAP2|2|fusion;nc|ENSG00000168003|P08195-5|SLC3A2;SLC3A2-GRAP2|1|fusion;SLC3A2-GRAP2|4|fusion;ENSG00000168003|ENST00000338663|SLC3A2;nc|ENSG00000168003|P08195-3|SLC3A2;SLC3A2-GRAP2|3|fusion;nc|ENSG00000168003|P08195|SLC3A2;nc|ENSG00000168003|P08195-4|SLC3A2;ENST00000457660.6_1_11:62649366-62653989:+|nuORF	SLC3A2-GRAP2|2|fusion	SLC3A2-GRAP2|2|fusion	MSMS	A375_MHC_IP_R1	1	377.2698669433594	3	377.252036	1128.73428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.326	1	66.326	65.826	66.826	0								0	0	0	0.15531	1	24015	24015		1.7423	0.14999	1				46374	14753	33769	34039	45307	45307					0.17505948456414444
SAKSLHSV	8	Unmodified	_SAKSLHSV_					0	0	0		nc|ENSG00000130779|P30622-2|CLIP1;nc|ENSG00000130779|P30622-1|CLIP1;ENSG00000130779|ENST00000620786|CLIP1;ENST00000543205.1_1_12:122762601-122763649:-|nuORF	nc|ENSG00000130779|P30622-2|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	MULTI-MSMS	A375_MHC_IP_R1	1	415.2981872558594	2	414.732335	827.450116	0.07925	3.2868E-05	-0.57105	-0.00023683	-0.4918	-0.00020396	414.73225540475096	30.78	1.9811	30.78	30.453	32.434	0					81	38	4	0	0	0	0.76248	1	9996	9996		16.942	4.4107	1	58273000			46375	4282	33770	34040	45308	45308					0.029489426918985373
SAKTKKLVLS	10	Unmodified	_SAKTKKLVLS_					0	0	0		ENSG00000187475|ENST00000338379|H1-6	ENSG00000187475|ENST00000338379|H1-6	ENSG00000187475|ENST00000338379|H1-6	MULTI-SECPEP	A375_MHC_IP_R1	1	359.3013916015625	3	358.900891	1073.68084	-0.040798	-1.4642E-05	0.92504	0.000332	0.88424	0.00031736	358.90130738354105	37.9	0.40889	37.9	37.658	38.067	0					13	7	3	0	0	0	0.94447	1	12844	12844		5.0475	2.9615	1	2403800			46376	8825	33771	34041	45309	45309					0.14695150953889424
SAKTPGFSV	9	Unmodified	_SAKTPGFSV_					0	0	0		ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	MULTI-SECPEP	A375_MHC_IP_R1	1	447.64007568359375	2	447.239993	892.465432	-0.018973	-8.4854E-06	-0.079755	-3.567E-05	-0.098728	-4.4155E-05	447.2398729438141	40.437	0.509	40.437	40.151	40.66	0					20	9	3	0	0	0	0.13244	1	13885	13885		59.368	35.348	1	4960700			46377	10012	33772	34042	45310	45310					0.01489809489100935
SAKTPGFSV	9	Unmodified	_SAKTPGFSV_					0	0	0		ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	MULTI-SECPEP	A375_MHC_IP_R2	2	447.6396179199219	2	447.239993	892.465432	-0.3795	-0.00016973	-0.017628	-7.8841E-06	-0.39713	-0.00017761	447.2399467456028	39.547	0.65955	40.322	40.118	40.777	0.77451					21	12	3	0	0	0	0.09145	1	14606	14606		69.338	31.364	1	4656300			46378	10012	33772	34042	45311	45311					0.01489809489100935
SALDIGIASYL	11	Unmodified	_SALDIGIASYL_					0	0	0			REV__ENSG00000146070|ENST00000274793|PLA2G7	REV__ENSG00000146070|ENST00000274793|PLA2G7	MULTI-SECPEP	A375_MHC_IP_R1	1	562.2052001953125	2	561.805697	1121.59684	-0.17778	-9.9876E-05	-0.0025354	-1.4244E-06	-0.18031	-0.0001013	561.8056568273261	70.068	1.5283	70.068	69.529	71.057	0					74	29	5	0	0	0	0.88538	1	25354	25354		13.042	0	1	13550000	+		46379	19515	33773	34043	45312	45312					0.04090575066334168
SALDLAMFI	9	Unmodified	_SALDLAMFI_					0	0	0			REV__nc|ENSG00000167536|Q6UX07-2|DHRS13	REV__nc|ENSG00000167536|Q6UX07-2|DHRS13	MULTI-SECPEP	A375_MHC_IP_R1	1	980.0560302734375	1	980.512131	979.504854	-0.16497	-0.00016175	-0.5168	-0.00050672	-0.68176	-0.00066848	980.5116102375856	138.28	0.25363	138.28	138.15	138.41	0					9	4	3	0	0	0	0.14105	1	53180	53180		60.39	9.5345	1	4971600	+		46380	20769	33774	34044	45313	45313					0.014281934483051373
SALEVVRKY	9	Unmodified	_SALEVVRKY_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	A375_MHC_IP_R1	1	355.94140625	3	355.541475	1063.60259	0.17089	6.0759E-05	-0.11631	-4.1353E-05	0.054583	1.9406E-05	355.5414089508264	35.853	0.61113	35.853	35.573	36.184	0					29	11	4	0	0	0	0.60917	1	11969	11969		29.841	25.312	1	3901200			46381	3986	33775	34045	45314	45314					0.07333718368658992
SALEVVRKY	9	Unmodified	_SALEVVRKY_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-MSMS	A375_MHC_IP_R2	2	355.9413146972656	3	355.541475	1063.60259	-0.43175	-0.00015351	0.74913	0.00026635	0.31738	0.00011284	355.5416081321802	34.992	0.55511	35.755	35.475	36.03	0.76338					20	10	3	0	0	0	0.16945	1	12650	12650		40.239	18.649	1	4150100			46382	3986	33775	34045	45315	45315					0.07333718368658992
SALEVVRKY	9	Unmodified	_SALEVVRKY_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	A375_MHC_IP_R2	2	532.0983276367188	2	532.808574	1063.60259	-0.92894	-0.00049494	0.62048	0.0003306	-0.30845	-0.00016435	532.8088753352437	34.917	0.30248	35.68	35.576	35.878	0.76338					9	5	2	0	0	0	0.5212	1	12639	12639		26.268	23.273	1	1378900			46383	3986	33775	34045	45316	45316					0.07333718368658992
SALEVVRKY	9	Unmodified	_SALEVVRKY_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-MATCH	A375_MHC_IP_R1	1		2	532.808574	1063.60259	-0.45651	-0.00024323	0.36985	0.00019706	-0.086665	-4.6176E-05	532.8088833193059	35.836	0.40779	35.836	35.625	36.033	0	0.07778	-0.00022107	NaN	26.268	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2297000			46384	3986	33775	34045							0.07333718368658992
SALHGAVP	8	Unmodified	_SALHGAVP_					0	0	0		GRIN2B|p.R1441C|1|0.65|ENSG00000273079|chr12:13562917-13562917|G/A|missense_variant;ENSG00000273079|ENST00000609686|GRIN2B	GRIN2B|p.R1441C|1|0.65|ENSG00000273079|chr12:13562917-13562917|G/A|missense_variant	GRIN2B|p.R1441C|1|0.65|ENSG00000273079|chr12:13562917-13562917|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	375.91705322265625	2	376.208495	750.402438	-0.030159	-1.1346E-05	-3.6804	-0.0013846	-3.7105	-0.0013959	376.2069735735843	19.138	0.15035	19.742	19.633	19.783	0.60308					4	2	2	0	0	0	0.972	1	5808	5808		0.69038	0.088878	1	465150			46385	9996	33776	34046	45317	45317					0.01725288491718402
SALHPERSL	9	Unmodified	_SALHPERSL_					0	0	0			REV__nc|ENSG00000168060|Q9UQQ1-4|NAALADL1	REV__nc|ENSG00000168060|Q9UQQ1-4|NAALADL1	MULTI-SECPEP	A375_MHC_IP_R2	2	504.66107177734375	2	505.274898	1008.53524	-0.6256	-0.0003161	-0.13564	-6.8536E-05	-0.76124	-0.00038463	505.2748610110405	42.826	0.75944	43.598	43.167	43.926	0.7724					15	14	2	0	0	0	0.53748	1	16010	16010		8.7454	0	1	1741900	+		46386	27344	33777	34047	45318	45318					0.03131688157714052
SALNSKINP	9	Unmodified	_SALNSKINP_					0	0	0		ENSG00000047662|ENST00000265018|FAM184B	ENSG00000047662|ENST00000265018|FAM184B	ENSG00000047662|ENST00000265018|FAM184B	MSMS	A375_MHC_IP_R1	1	472.1717834472656	2	472.263999	942.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.138	1	35.138	34.638	35.638	0								0	0	0	0.14851	1	11661	11661		24.021	2.2739	1				46387	1207	33778	34048	45319	45319					0.039888834091470926
SALPPPEPL	9	Unmodified	_SALPPPEPL_					0	0	0			REV__ENSG00000213462|ENST00000394323|ERV3-1	REV__ENSG00000213462|ENST00000394323|ERV3-1	MULTI-SECPEP	A375_MHC_IP_R2	2	461.1575927734375	2	460.758018	919.501483	-0.38557	-0.00017765	-0.28282	-0.00013031	-0.66839	-0.00030796	460.75789377071885	70.251	0.71106	70.985	70.54	71.251	0.73421					21	13	2	0	0	0	0.16229	1	26643	26643		57.471	2.6978	1	1469600	+		46388	22623	33779	34049	45320	45320					0.038512666659471506
SALREIAF	8	Unmodified	_SALREIAF_					0	0	0		nc|ENSG00000107669|O95260-2|ATE1;ENSG00000107669|ENST00000224652|ATE1	nc|ENSG00000107669|O95260-2|ATE1	nc|ENSG00000107669|O95260-2|ATE1	MULTI-SECPEP	A375_MHC_IP_R1	1	454.1559143066406	2	453.75581	905.497067	-0.49077	-0.00022269	-0.042707	-1.9379E-05	-0.53348	-0.00024207	453.75559241071704	66.978	0.91927	66.978	66.684	67.603	0					22	17	2	0	0	0	0.60112	1	24264	24264		57.722	7.789	1	1925700			46389	2748	33780	34050	45321	45321					0.04053802243049631
SALREIAF	8	Unmodified	_SALREIAF_					0	0	0		nc|ENSG00000107669|O95260-2|ATE1;ENSG00000107669|ENST00000224652|ATE1	nc|ENSG00000107669|O95260-2|ATE1	nc|ENSG00000107669|O95260-2|ATE1	MULTI-MSMS	A375_MHC_IP_R2	2	454.1553649902344	2	453.75581	905.497067	-0.42962	-0.00019494	-0.29687	-0.00013471	-0.7265	-0.00032965	453.7555703384436	65.98	0.56209	66.718	66.475	67.037	0.73811					17	10	2	0	0	0	0.34256	1	25028	25028		55.503	7.7541	1	2078600			46390	2748	33780	34050	45322	45322					0.04053802243049631
SALRGLLHIE	10	Unmodified	_SALRGLLHIE_					0	0	0		nc|ENSG00000177324|Q8NDZ0-2|BEND2	nc|ENSG00000177324|Q8NDZ0-2|BEND2	nc|ENSG00000177324|Q8NDZ0-2|BEND2	MULTI-MSMS	A375_MHC_IP_R2	2	371.2684631347656	3	370.220624	1107.64004	0.34956	0.00012942	-0.065522	-2.4258E-05	0.28404	0.00010516	370.2205414351432	27.656	0.50581	28.334	28.098	28.604	0.67857					27	9	4	0	0	0	0.70682	1	9415	9415		9.2438	0.26753	1	16943000			46391	14783	33781	34051	45323	45323					0.09052809634272307
SALRKYQRWRR	11	Unmodified	_SALRKYQRWRR_					0	0	0			REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1	REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	506.7187805175781	3	507.295409	1518.8644	-0.27442	-0.00013921	3.7739	0.0019145	3.4995	0.0017753	507.29752835851156	71.106	0.15337	71.106	71.005	71.159	0					4	2	2	0	0	0	0.99625	1	25821	25821		1.2148	1.0749	1	555830	+		46392	28881	33782	34052	45324	45324					0.12571937508096198
SALSATFSGP	10	Unmodified	_SALSATFSGP_					0	0	0		ENSG00000144119|ENST00000272520|C1QL2	ENSG00000144119|ENST00000272520|C1QL2	ENSG00000144119|ENST00000272520|C1QL2	MSMS	A375_MHC_IP_R2	2	469.1608581542969	2	469.234907	936.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.43	1	58.179	57.679	58.679	0.74894								0	0	0	0.14862	1	21717	21717		20.454	1.1966	1				46393	5464	33783	34053	45325	45325					-0.01550798236121409
SALSAVFG	8	Unmodified	_SALSAVFG_					0	0	0			REV__SLC6A16|p.S356F|1|0.16|ENSG00000063127|chr19:49309038-49309038|G/A|missense_variant	REV__SLC6A16|p.S356F|1|0.16|ENSG00000063127|chr19:49309038-49309038|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	376.6029052734375	2	376.202879	750.391205	0.13616	5.1222E-05	-0.16844	-6.3368E-05	-0.032283	-1.2145E-05	376.2026879749171	86.425	0.65882	86.425	86.072	86.73	0					15	12	2	0	0	0	0.72761	1	31734	31734		26.341	0	1	1284300	+		46394	27999	33784	34054	45326	45326					0.00602466397583612
SALSAVFG	8	Unmodified	_SALSAVFG_					0	0	0			REV__SLC6A16|p.S356F|1|0.16|ENSG00000063127|chr19:49309038-49309038|G/A|missense_variant	REV__SLC6A16|p.S356F|1|0.16|ENSG00000063127|chr19:49309038-49309038|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	376.6026306152344	2	376.202879	750.391205	0.41122	0.0001547	-0.71012	-0.00026715	-0.29889	-0.00011245	376.20259352323023	85.515	0.45749	86.251	86.034	86.492	0.73602					13	8	2	0	0	0	0.72761	1	32552	32552		26.341	0	1	1475300	+		46395	27999	33784	34054	45327	45327					0.00602466397583612
SALSAVFG	8	Unmodified	_SALSAVFG_					0	0	0			REV__SLC6A16|p.S356F|1|0.16|ENSG00000063127|chr19:49309038-49309038|G/A|missense_variant	REV__SLC6A16|p.S356F|1|0.16|ENSG00000063127|chr19:49309038-49309038|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	376.202879	750.391205	0.13616	5.1222E-05	-0.16844	-6.3368E-05	-0.032283	-1.2145E-05	376.2026879749171	86.425	0.65882	86.425	86.072	86.73	0	0.087044	0.00026646	NaN	26.341	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1284300	+		46396	27999	33784	34054							0.00602466397583612
SALSAVFG	8	Unmodified	_SALSAVFG_					0	0	0			REV__SLC6A16|p.S356F|1|0.16|ENSG00000063127|chr19:49309038-49309038|G/A|missense_variant	REV__SLC6A16|p.S356F|1|0.16|ENSG00000063127|chr19:49309038-49309038|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	376.202879	750.391205	0.41122	0.0001547	-0.71012	-0.00026715	-0.29889	-0.00011245	376.20259352323023	85.515	0.45749	86.251	86.034	86.492	0.73602	-0.087044	-0.0001411	NaN	26.341	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1475300	+		46397	27999	33784	34054							0.00602466397583612
SALSDLHAHK	10	Unmodified	_SALSDLHAHK_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;ENST00000487791.1_1_16:226802-227261:+|nuORF	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-SECPEP	A375_MHC_IP_R1	1	360.5926818847656	3	360.192845	1077.55671	-6.3677E-05	-2.2936E-08	-0.074638	-2.6884E-05	-0.074701	-2.6907E-05	360.19246238013585	19.554	0.4069	19.554	19.318	19.725	0					13	7	3	0	0	0	0.62001	1	4921	4921		23.964	7.3983	1	2497600			46398	8913	33785	34055	45328	45328					0.02103073186435722
SALSYDTAY	9	Unmodified	_SALSYDTAY_					0	0	0		tr|U7T616|U7T616_FUSNUBranched-chainaminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00058PE=3SV=1	tr|U7T616|U7T616_FUSNUBranched-chainaminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00058PE=3SV=1	tr|U7T616|U7T616_FUSNUBranched-chainaminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00058PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	989.811767578125	1	990.441468	989.434192	0.61935	0.00061343	-0.69208	-0.00068546	-0.072725	-7.2029E-05	990.4407799679109	69.263	0.40771	69.263	69.02	69.427	0					12	7	2	0	0	0	0.43707	1	25142	25142		28.487	1.6032	1	1923100			46399	30040	33786	34056	45329	45329					-0.06094808335660673
SALTKHEII	9	Unmodified	_SALTKHEII_					0	0	0		ENSG00000166704|ENST00000551380|ZNF606	ENSG00000166704|ENST00000551380|ZNF606	ENSG00000166704|ENST00000551380|ZNF606	MSMS	A375_MHC_IP_R1	1	506.3517150878906	2	506.295299	1010.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.118	1	88.118	87.618	88.618	0								0	0	0	0.15486	1	32343	32343		10.074	0.6908	1				46400	7103	33787	34057	45330	45330					0.0711802947733986
SALVFEPPL	9	Unmodified	_SALVFEPPL_					0	0	0		ENST00000465904.1_1_6:109770366-109770675:-|nuORF	ENST00000465904.1_1_6:109770366-109770675:-|nuORF	ENST00000465904.1_1_6:109770366-109770675:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	487.1736145019531	2	486.773668	971.532783	-0.19919	-9.6963E-05	0.073697	3.5874E-05	-0.1255	-6.1089E-05	486.7736231401743	79.538	0.8216	79.538	79.161	79.983	0					32	15	3	0	0	0	0.10969	1	28989	28989		67.344	22.937	1	7175500			46401	12251	33788	34058	45331	45331					0.0458783970004788
SALVFEPPL	9	Unmodified	_SALVFEPPL_					0	0	0		ENST00000465904.1_1_6:109770366-109770675:-|nuORF	ENST00000465904.1_1_6:109770366-109770675:-|nuORF	ENST00000465904.1_1_6:109770366-109770675:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	487.207763671875	2	486.773668	971.532783	-0.5456	-0.00026558	0.066481	3.2361E-05	-0.47911	-0.00023322	486.7736933210607	78.512	0.76273	79.257	78.982	79.744	0.74474					28	14	3	0	0	0	0.07754	1	29841	29841		64.236	22.142	1	10387000			46402	12251	33788	34058	45332	45332					0.0458783970004788
SALVQVDADP	10	Unmodified	_SALVQVDADP_					0	0	0		ENSG00000120332|ENST00000239462|TNN	ENSG00000120332|ENST00000239462|TNN	ENSG00000120332|ENST00000239462|TNN	MULTI-MSMS	A375_MHC_IP_R2	2	1015.4400024414062	1	1014.51022	1013.50294	-0.046981	-4.7663E-05	2.9063	0.0029485	2.8594	0.0029009	1014.5153018951813	128.22	0.35757	128.46	128.25	128.6	0.23946					9	6	2	0	0	0	0.70012	1	50282	50282		12.241	0	1	2712500			46403	3660	33789	34059	45333	45333					-0.003271440359526423
SALVSDSALY	10	Unmodified	_SALVSDSALY_					0	0	0		nc|ENSG00000211777|A0A0B4J244|TRAV3	nc|ENSG00000211777|A0A0B4J244|TRAV3	nc|ENSG00000211777|A0A0B4J244|TRAV3	MULTI-SECPEP	A375_MHC_IP_R2	2	513.6608276367188	2	513.261122	1024.50769	-0.98745	-0.00050682	0.12008	6.1634E-05	-0.86737	-0.00044519	513.2611213212112	35.392	1.0114	36.156	35.576	36.587	0.76338					41	19	3	0	0	0	0.52461	1	12690	12690		36.127	0	1	15991000			46404	14878	33790	34060	45334	45334					-0.003582598931643588
SANETNGF	8	Unmodified	_SANETNGF_					0	0	0		ENST00000452157.5_1_5:56218957-56234137:-|nuORF;nc|ENSG00000155545|Q7Z3K6-4|MIER3;nc|ENSG00000155545|Q7Z3K6-3|MIER3;ENSG00000155545|ENST00000381199|MIER3;nc|ENSG00000155545|Q7Z3K6-2|MIER3	ENST00000452157.5_1_5:56218957-56234137:-|nuORF	ENST00000452157.5_1_5:56218957-56234137:-|nuORF	MSMS	A375_MHC_IP_R2	2	420.12353515625	2	420.180132	838.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.84	1	102.6	102.1	103.1	0.76428								0	0	0	0.16876	1	38598	38598		7.9102	0	1				46405	6148	33791	34061	45335	45335					-0.07992803855461261
SANKYSKYLYE	11	Unmodified	_SANKYSKYLYE_					0	0	0			REV__tr|U7T2I2|U7T2I2_FUSNURibonuclease3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rncPE=3SV=1	REV__tr|U7T2I2|U7T2I2_FUSNURibonuclease3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rncPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	683.7376098632812	2	683.337892	1364.66123	-0.47211	-0.00032261	-0.62285	-0.00042562	-1.095	-0.00074823	683.3376043844972	51.706	1.1165	51.706	51.322	52.438	0					55	21	4	0	0	0	0.69231	1	18313	18313		16.149	0	1	17927000	+		46406	28744	33792	34062	45336	45336					-0.0065126984752623684
SANKYSKYLYE	11	Unmodified	_SANKYSKYLYE_					0	0	0			REV__tr|U7T2I2|U7T2I2_FUSNURibonuclease3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rncPE=3SV=1	REV__tr|U7T2I2|U7T2I2_FUSNURibonuclease3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rncPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	683.7372436523438	2	683.337892	1364.66123	-0.76339	-0.00052165	-0.72958	-0.00049855	-1.493	-0.0010202	683.3374840461003	50.969	1.0125	51.723	51.412	52.425	0.75406					49	19	3	0	0	0	0.69231	1	19137	19137		16.149	0	1	14347000	+		46407	28744	33792	34062	45337	45337					-0.0065126984752623684
SANKYSKYLYE	11	Unmodified	_SANKYSKYLYE_					0	0	0			REV__tr|U7T2I2|U7T2I2_FUSNURibonuclease3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rncPE=3SV=1	REV__tr|U7T2I2|U7T2I2_FUSNURibonuclease3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rncPE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	683.337892	1364.66123	-0.47211	-0.00032261	-0.62285	-0.00042562	-1.095	-0.00074823	683.3376043844972	51.706	1.1165	51.706	51.322	52.438	0	-0.0084064	6.9503E-05	NaN	16.149	55	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17927000	+		46408	28744	33792	34062							-0.0065126984752623684
SANPVQALH	9	Unmodified	_SANPVQALH_					0	0	0		ENST00000482621.5_1_1:1322613-1328165:-|nuORF	ENST00000482621.5_1_1:1322613-1328165:-|nuORF	ENST00000482621.5_1_1:1322613-1328165:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	469.3297119140625	2	468.748516	935.482479	-0.15703	-7.3607E-05	-0.024365	-1.1421E-05	-0.18139	-8.5028E-05	468.74845226499724	35.385	0.61164	35.385	35.167	35.778	0					19	11	2	0	0	0	0.52144	1	11716	11716		23.148	2.6948	1	4462700			46409	12527	33793	34063	45338	45338					0.01215730094884293
SANRIELSY	9	Unmodified	_SANRIELSY_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R1	1	527.1724243164062	2	526.772188	1051.52982	-0.26953	-0.00014198	0.19857	0.0001046	-0.070964	-3.7382E-05	526.7722349448952	45.626	0.40435	45.626	45.384	45.789	0					12	7	2	0	0	0	0.17338	1	16002	16002		39.95	7.6442	1	3027100	+		46410	19932	33794	34064	45339	45339					0.006119645752505676
SANRIELSY	9	Unmodified	_SANRIELSY_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R2	2	527.1719360351562	2	526.772188	1051.52982	-0.5914	-0.00031154	0.34612	0.00018233	-0.24529	-0.00012921	526.7721078952643	44.873	0.4101	45.642	45.34	45.75	0.7691					11	7	2	0	0	0	0.04447	1	16764	16764		66.457	22.598	1	2998700	+		46411	19932	33794	34064	45340	45340					0.006119645752505676
SANSDSKQLM	10	Unmodified	_SANSDSKQLM_					0	0	0			REV__nc|ENSG00000145362|Q01484-5|ANK2	REV__nc|ENSG00000145362|Q01484-5|ANK2	MULTI-SECPEP	A375_MHC_IP_R2	2	540.179443359375	2	540.753138	1079.49172	-1.0584	-0.00057233	1.2264	0.00066318	0.16801	9.0853E-05	540.7538116932542	51.514	0.65983	52.266	51.966	52.626	0.75225					17	12	2	0	0	0	0.77204	1	19415	19415		21.537	0	1	2838000	+		46412	27274	33795	34065	45341	45341					-0.04484289401739261
SANTRFAL	8	Unmodified	_SANTRFAL_					0	0	0		ENSG00000021355|ENST00000380739|SERPINB1	ENSG00000021355|ENST00000380739|SERPINB1	ENSG00000021355|ENST00000380739|SERPINB1	MULTI-MSMS	A375_MHC_IP_R1	1	440.63787841796875	2	440.237784	878.461016	0.2832	0.00012468	-0.31619	-0.0001392	-0.032986	-1.4522E-05	440.23768763087156	44.497	0.91908	44.497	43.959	44.878	0					46	17	4	0	0	0	0.029854	1	15508	15508		118.07	43.139	1	23699000			46413	1062	33796	34066	45342	45342					0.016923450661806783
SANTRFAL	8	Unmodified	_SANTRFAL_					0	0	0		ENSG00000021355|ENST00000380739|SERPINB1	ENSG00000021355|ENST00000380739|SERPINB1	ENSG00000021355|ENST00000380739|SERPINB1	MULTI-MSMS	A375_MHC_IP_R2	2	440.6382751464844	2	440.237784	878.461016	-0.15022	-6.6132E-05	-0.13611	-5.9922E-05	-0.28633	-0.00012605	440.2376694098676	43.589	0.70656	44.361	44.079	44.786	0.77217					33	13	3	0	0	0	0.063167	1	16212	16212		139.14	57.248	1	21404000			46414	1062	33796	34066	45343	45343					0.016923450661806783
SANVRASLKF	10	Unmodified	_SANVRASLKF_					0	0	0		ENST00000579702.1_1_18:51025702-51053171:+|nuORF	ENST00000579702.1_1_18:51025702-51053171:+|nuORF	ENST00000579702.1_1_18:51025702-51053171:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	364.238037109375	3	364.876857	1091.60874	0.033671	1.2286E-05	3.1659	0.0011551	3.1995	0.0011674	365.2128880704113	27.703	0.91407	28.382	27.792	28.706	0.67857					24	15	4	0	0	0	0.87163	1	9400	9400		8.4443	3.5473	1	2501200			46415	13665	33797	34067	45344	45344					0.06660236600191638
SAPGSHPGYY	10	Unmodified	_SAPGSHPGYY_					0	0	0		chr11:89278933-89284773|169|209.77|0.04|12.3|+|1|TE_info:L1MC3,L1MC3_dup8910,L1,LINE,donor,-,89278589,89278933|None,TYR|5	chr11:89278933-89284773|169|209.77|0.04|12.3|+|1|TE_info:L1MC3,L1MC3_dup8910,L1,LINE,donor,-,89278589,89278933|None,TYR|5	chr11:89278933-89284773|169|209.77|0.04|12.3|+|1|TE_info:L1MC3,L1MC3_dup8910,L1,LINE,donor,-,89278589,89278933|None,TYR|5	MULTI-MSMS	A375_MHC_IP_R2	2	519.6597290039062	2	518.230156	1034.44576	-0.84415	-0.00043746	0.27069	0.00014028	-0.57346	-0.00029718	518.2301769230245	36.053	1.3207	36.817	35.98	37.301	0.76338					63	25	4	0	0	0	0.71245	1	12876	12876		6.7232	2.3939	1	114510000			46416	403	33798	34068	45345	45345					-0.07008566521653847
SAPIPEPKTKD	11	Unmodified	_SAPIPEPKTKD_					0	0	0		nc|ENSG00000166900|Q13277-2|STX3;nc|ENSG00000166900|Q13277-3|STX3;ENSG00000166900|ENST00000337979|STX3	nc|ENSG00000166900|Q13277-2|STX3	nc|ENSG00000166900|Q13277-2|STX3	MULTI-MSMS	A375_MHC_IP_R2	2	395.2834777832031	3	394.883677	1181.6292	-0.43931	-0.00017347	-0.092416	-3.6494E-05	-0.53172	-0.00020997	394.8836217908645	57.725	0.71011	58.474	58.019	58.729	0.74894					19	13	2	0	0	0	0.72964	1	21845	21845		9.2438	0	1	2333400			46417	14744	33799	34069	45346	45346					0.045653624693159145
SAPLSQAPPGF	11	Unmodified	_SAPLSQAPPGF_					0	0	0			REV__ENSG00000134438|ENST00000334889|RAX	REV__ENSG00000134438|ENST00000334889|RAX	MULTI-SECPEP	A375_MHC_IP_R2	2	536.6103515625	2	536.277106	1070.53966	-0.92656	-0.00049689	0.17655	9.4678E-05	-0.75001	-0.00040222	536.2770836054855	74.825	0.65847	75.563	75.214	75.872	0.73751					17	12	2	0	0	0	0.98748	1	28353	28353		5.2969	0	1	2097000	+		46418	18779	33800	34070	45347	45347					0.007211525806042118
SAPRAWTL	8	Unmodified	_SAPRAWTL_					0	0	0			REV__ENST00000505521.1_1_5:177019227-177019656:+|nuORF	REV__ENST00000505521.1_1_5:177019227-177019656:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	451.6482849121094	2	451.248152	900.481751	-0.45427	-0.00020499	0.055907	2.5228E-05	-0.39836	-0.00017976	451.24823215027493	50.326	0.86447	51.08	50.497	51.361	0.75406					28	16	3	0	0	0	0.91495	1	18961	18961		24.674	0	1	1787900	+		46419	25535	33801	34071	45348	45348					0.027529354458465605
SAPSAYWLV	9	Unmodified	_SAPSAYWLV_					0	0	0		EGFLAM|p.G514S|1|0.31|ENSG00000164318|chr5:38418111-38418111|G/A|missense_variant	EGFLAM|p.G514S|1|0.31|ENSG00000164318|chr5:38418111-38418111|G/A|missense_variant	EGFLAM|p.G514S|1|0.31|ENSG00000164318|chr5:38418111-38418111|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	497.1634521484375	2	497.255643	992.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.865	1	64.865	64.365	65.365	0								0	0	0	0.1535	1	23477	23477		15.847	1.0089	1				46420	830	33802	34072	45349	45349					0.00018382523182935984
SAPWFPLPWFP	11	Unmodified	_SAPWFPLPWFP_					0	0	0		ENST00000318080.6_1_9:131857548-131857632:-|nuORF	ENST00000318080.6_1_9:131857548-131857632:-|nuORF	ENST00000318080.6_1_9:131857548-131857632:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	448.48590087890625	3	448.89737	1343.67028	-0.73413	-0.00032955	2.0045	0.0008998	1.2703	0.00057025	448.89834726787166	26.154	0.30463	26.814	26.703	27.008	0.65992					7	5	2	0	0	0	0.99883	1	8817	8817		1.2148	0.10508	1	1977300			46421	10669	33803	34073	45350	45350					0.012191682994398434
SAPWFPLPWFP	11	Unmodified	_SAPWFPLPWFP_					0	0	0		ENST00000318080.6_1_9:131857548-131857632:-|nuORF	ENST00000318080.6_1_9:131857548-131857632:-|nuORF	ENST00000318080.6_1_9:131857548-131857632:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	448.89737	1343.67028	-0.38724	-0.00017383	2.3203	0.0010416	1.9331	0.00086776	448.898468219717	26.829	0.29954	26.829	26.728	27.027	0	0.0073175	0.00024406	NaN	2.6312	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1279400			46422	10669	33803	34073							0.012191682994398434
SAQAGLPDPA	10	Unmodified	_SAQAGLPDPA_					0	0	0		ENST00000436636.6_1_3:171177857-171178079:-|nuORF	ENST00000436636.6_1_3:171177857-171178079:-|nuORF	ENST00000436636.6_1_3:171177857-171178079:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	464.6328430175781	2	463.732532	925.45051	-0.025913	-1.2016E-05	1.2703	0.00058909	1.2444	0.00057708	463.73435773581656	43.05	1.5243	43.05	42.537	44.061	0					74	29	4	0	0	0	0.69306	1	14976	14976		13.906	1.6654	1	17061000			46423	11928	33804	34074	45351	45351					-0.015196823789210612
SAQDPFRIF	9	Unmodified	_SAQDPFRIF_					0	0	0		ENST00000372685.7_1_X:102509542-102510044:-|nuORF;ENST00000372685.7_1_X:102508942-102510130:-|nuORF	ENST00000372685.7_1_X:102509542-102510044:-|nuORF	ENST00000372685.7_1_X:102509542-102510044:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	540.7208251953125	2	540.777274	1079.53999	-1.0277	-0.00055578	1.0156	0.00054921	-0.012154	-6.5727E-06	540.7769642996536	97.216	0.45879	97.972	97.771	98.23	0.75586					12	8	2	0	0	0	0.30259	1	36942	36942		38.615	4.213	1	1072400			46424	11209	33805	34075	45352	45352					0.003405723004561878
SAQDRQLTL	9	Unmodified	_SAQDRQLTL_					0	0	0		ENSG00000164916|ENST00000328914|FOXK1;nc|ENSG00000164916|P85037-2|FOXK1	ENSG00000164916|ENST00000328914|FOXK1	ENSG00000164916|ENST00000328914|FOXK1	MULTI-SECPEP	A375_MHC_IP_R2	2	516.6445922851562	2	516.277638	1030.54072	-0.94837	-0.00048962	0.091477	4.7228E-05	-0.85689	-0.00044239	516.277496744728	37.77	0.5126	38.545	38.279	38.791	0.77451					13	9	2	0	0	0	0.61452	1	13830	13830		10.8	3.5103	1	2569200			46425	6892	33806	34076	45353	45353					0.026673669495039576
SAQERLIPL	9	Unmodified	_SAQERLIPL_					0	0	0		ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	MULTI-SECPEP	A375_MHC_IP_R2	2	513.684326171875	2	513.800749	1025.58694	-0.65841	-0.00033829	0.27903	0.00014337	-0.37938	-0.00019492	513.8011405077939	69.171	1.9779	69.906	68.918	70.895	0.73511					54	38	2	0	0	0	0.13208	1	26233	26233		57.722	30.093	1	27519000			46426	3393	33807	34077	45354	45354					0.07517431851624679
SAQFILKPDT	10	Unmodified	_SAQFILKPDT_					0	0	0			REV__nc|ENSG00000104133|Q96JI7-2|SPG11	REV__nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-MSMS	A375_MHC_IP_R2	2	374.605712890625	3	373.873001	1118.59717	0.12581	4.7039E-05	0.051691	1.9326E-05	0.17751	6.6365E-05	373.8733517556794	38.011	0.76672	38.786	38.534	39.3	0.77451					32	14	4	0	0	0	0.70972	1	14068	14068		7.9454	0	1	11258000	+		46427	17305	33808	34078	45355	45355					0.04261994786179457
SAQGNHIPL	9	Unmodified	_SAQGNHIPL_					0	0	0		ENST00000337198.9_1_8:103876093-103876378:-|nuORF	ENST00000337198.9_1_8:103876093-103876378:-|nuORF	ENST00000337198.9_1_8:103876093-103876378:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	469.14801025390625	2	468.748516	935.482479	-0.81767	-0.00038328	0.06453	3.0249E-05	-0.75314	-0.00035303	468.748477437124	34.599	0.4574	35.362	35.068	35.525	0.76338					15	8	2	0	0	0	0.27742	1	12476	12476		51.63	9.7902	1	4595900			46428	10826	33809	34079	45356	45356					0.012157300949070304
SAQGSDVSLTA	11	Unmodified	_SAQGSDVSLTA_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000497377.5_1_6:31322262-31322491:-|nuORF;ENST00000481849.5_1_6:31322262-31322472:-|nuORF;ENST00000383620.4_1_6:29857122-29858256:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29912792-29913229:+|nuORF;ENST00000494367.1_1_6:29976031-29977313:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENSG00000234745|ENST00000412585|HLA-B;ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-SECPEP	A375_MHC_IP_R1	1	518.65087890625	2	518.251286	1034.48802	-0.41123	-0.00021312	0.016887	8.7516E-06	-0.39434	-0.00020437	518.2512400801186	40.582	0.60851	40.582	40.304	40.913	0					34	11	4	0	0	0	0.49853	1	13932	13932		51.488	25.22	1	16303000			46429	9539;9742	33810	34080	45357	45357					-0.027846359039585877
SAQGSDVSLTA	11	Unmodified	_SAQGSDVSLTA_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000497377.5_1_6:31322262-31322491:-|nuORF;ENST00000481849.5_1_6:31322262-31322472:-|nuORF;ENST00000383620.4_1_6:29857122-29858256:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29912792-29913229:+|nuORF;ENST00000494367.1_1_6:29976031-29977313:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENSG00000234745|ENST00000412585|HLA-B;ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-SECPEP	A375_MHC_IP_R2	2	517.687255859375	2	518.251286	1034.48802	-0.75572	-0.00039165	-0.22173	-0.00011491	-0.97745	-0.00050656	518.251161154246	39.92	0.7617	40.695	40.269	41.031	0.77451					40	14	4	0	0	0	0.18699	1	14738	14738		64.927	26.312	1	15718000			46430	9539;9742	33810	34080	45358	45358					-0.027846359039585877
SAQLLSRV	8	Unmodified	_SAQLLSRV_					0	0	0			REV__nc|ENSG00000074803|Q13621-3|SLC12A1	REV__nc|ENSG00000074803|Q13621-3|SLC12A1	MULTI-MSMS	A375_MHC_IP_R1	1	437.661376953125	2	437.261259	872.507966	0.0022534	9.8534E-07	0.18677	8.1668E-05	0.18902	8.2653E-05	437.2612836781658	53.818	0.55814	53.818	53.555	54.113	0					17	10	2	0	0	0	0.48656	1	19197	19197		49.554	1.9599	1	4531900	+		46431	16642	33811	34081	45359	45359					0.0666120461733044
SAQPHPPSPT	10	Unmodified	_SAQPHPPSPT_					0	0	0			REV__ENSG00000186918|ENST00000344423|ZNF395	REV__ENSG00000186918|ENST00000344423|ZNF395	MSMS	A375_MHC_IP_R1	1	509.67694091796875	2	509.751256	1017.48796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.512	1	42.512	42.012	43.012	0								0	0	0	0.15089	1	14740	14740		16.149	0.30192	1		+		46432	21998	33812	34082	45360	45360					-0.020085911132923684
SAQRQWRQYEA	11	Unmodified	_SAQRQWRQYEA_					0	0	0			REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF	REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	712.2474365234375	2	711.847281	1421.68001	-0.79554	-0.0005663	0.80838	0.00057544	0.01284	9.1404E-06	711.8480546555688	40.063	0.45559	40.838	40.575	41.031	0.77451					25	8	4	0	0	0	0.36212	1	14792	14792		41.956	20.419	1	19711000	+		46433	16336	33813	34083	45361	45361					-0.013962954330736466
SAQRQWRQYEA	11	Unmodified	_SAQRQWRQYEA_					0	0	0			REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF	REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	711.847281	1421.68001	-0.51968	-0.00036993	1.0904	0.00077618	0.57069	0.00040624	711.8482235036099	40.735	0.50531	40.735	40.458	40.963	0	-0.051398	0.00010803	NaN	41.956	28	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19126000	+		46434	16336	33813	34083							-0.013962954330736466
SAQRQWRQYEA	11	Unmodified	_SAQRQWRQYEA_					0	0	0			REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF	REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	711.847281	1421.68001	-0.79554	-0.0005663	0.80838	0.00057544	0.01284	9.1404E-06	711.8480546555688	40.063	0.45559	40.838	40.575	41.031	0.77451	0.051398	-0.00029343	NaN	41.956	25	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19711000	+		46435	16336	33813	34083							-0.013962954330736466
SARAVWHLYT	10	Unmodified	_SARAVWHLYT_					0	0	0			REV__ENST00000527539.1_1_11:119692129-119692348:-|nuORF	REV__ENST00000527539.1_1_11:119692129-119692348:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	402.57989501953125	3	401.88049	1202.61964	-0.25732	-0.00010341	-1.7172	-0.0006901	-1.9745	-0.00079351	401.87952003702003	20.37	0.50756	20.37	20.079	20.587	0					15	9	2	0	0	0	0.92445	1	5167	5167		10.315	1.339	1	1501500	+		46436	25790	33814	34084	45362	45362					0.026436389744503686
SARFRPFTF	9	Unmodified	_SARFRPFTF_					0	0	0		nc|ENSG00000228741|Q96N96-5|SPATA13;nc|ENSG00000228741|Q96N96-4|SPATA13;nc|ENSG00000228741|Q96N96|SPATA13;ENSG00000182957|ENST00000382108|SPATA13;ENST00000494772.5_1_13:24825873-24852798:+|nuORF	nc|ENSG00000228741|Q96N96-5|SPATA13	nc|ENSG00000228741|Q96N96-5|SPATA13	MULTI-MSMS	A375_MHC_IP_R2	2	377.2698669433594	3	376.869814	1127.58761	0.10257	3.8656E-05	0.1603	6.0411E-05	0.26287	9.9067E-05	376.86982220709865	65.291	0.60867	66.029	65.766	66.375	0.73811					28	11	3	0	0	0	0.11638	1	24731	24731		47.732	12.12	1	4310100			46437	8450	33815	34085	45363	45363					0.028922712913072246
SARILASGDYM	11	Unmodified	_SARILASGDYM_					0	0	0			REV__ENSG00000111642|ENST00000544040|CHD4	REV__ENSG00000111642|ENST00000544040|CHD4	MSMS	A375_MHC_IP_R1	1	395.13482666015625	3	395.197379	1182.57031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.707	1	32.707	32.207	33.207	0								0	0	0	0.15346	1	10593	10593		18.34	4.8211	1		+		46438	17680	33816	34086	45364	45364					-0.013674370966555216
SARLSCIKY	9	Unmodified	_SARLSCIKY_					0	0	0			REV__ENST00000478380.5_1_9:286487-312499:+|nuORF	REV__ENST00000478380.5_1_9:286487-312499:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	520.118896484375	2	520.781502	1039.54845	-1.2009	-0.00062541	-3.717	-0.0019357	-4.9179	-0.0025611	521.2808264128489	37.251	0.35444	38.022	37.716	38.07	0.7709					9	6	2	0	0	0	0.73363	1	13583	13583		10.824	9.4944	1	1494400	+		46439	25213	33817	34087	45365	45365					0.03025802945421674
SARLTQGLIQL	11	Unmodified	_SARLTQGLIQL_					0	0	0			REV__ENSG00000104848|ENST00000221444|KCNA7	REV__ENSG00000104848|ENST00000221444|KCNA7	MULTI-SECPEP	A375_MHC_IP_R2	2	401.1290283203125	3	400.575067	1198.70337	-0.20625	-8.2619E-05	1.145	0.00045864	0.93871	0.00037602	400.57557257438657	35.799	0.30624	36.562	36.384	36.69	0.76338					6	5	2	0	0	0	0.99332	1	12972	12972		7.0371	2.9205	1	701250	+		46440	17344	33818	34088	45366	45366					0.11196750351541596
SARLWFTYRRK	11	Unmodified	_SARLWFTYRRK_					0	0	0		nc|ENSG00000101844|Q8WYN0-2|ATG4A;ENSG00000101844|ENST00000372232|ATG4A	nc|ENSG00000101844|Q8WYN0-2|ATG4A	nc|ENSG00000101844|Q8WYN0-2|ATG4A	MULTI-SECPEP	A375_MHC_IP_R1	1	494.69512939453125	3	495.280877	1482.8208	-0.28079	-0.00013907	-1.3395	-0.00066344	-1.6203	-0.00080251	495.2800769090253	88.452	0.35688	88.452	88.307	88.663	0					13	6	3	0	0	0	0.99916	1	32468	32468		2.4348	0	1	2822600			46441	2327	33819	34089	45367	45367					0.0987032801094756
SARNTLDLEET	11	Unmodified	_SARNTLDLEET_					0	0	0		ENSG00000095397|ENST00000362057|WHRN;nc|ENSG00000095397|Q9P202-3|WHRN;nc|ENSG00000095397|Q9P202-4|WHRN	ENSG00000095397|ENST00000362057|WHRN	ENSG00000095397|ENST00000362057|WHRN	MULTI-MSMS	A375_MHC_IP_R2	2	624.7582397460938	2	624.806956	1247.59936	-0.96934	-0.00060565	1.3284	0.00082998	0.35903	0.00022432	624.8077029180528	66.07	0.30521	66.808	66.68	66.985	0.73811					7	5	2	0	0	0	0.72869	1	25032	25032		10.151	0.076642	1	1019500			46442	2043	33820	34090	45368	45368					-0.014536212666598658
SARRASLRCST	11	Unmodified	_SARRASLRCST_					0	0	0			REV__ENST00000358607.10_1_19:18699645-18700248:+|nuORF	REV__ENST00000358607.10_1_19:18699645-18700248:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	402.851806640625	3	403.215656	1206.62514	-0.57453	-0.00023166	-2.7147	-0.0010946	-3.2892	-0.0013263	403.2141331503034	19.327	0.50369	19.327	19.221	19.725	0					16	11	2	0	0	0	0.72964	1	4645	4645		9.2438	0.49199	1	17221000	+		46443	23860	33821	34091	45369	45369					0.0300899449462122
SARRIFQKI	9	Unmodified	_SARRIFQKI_					0	0	0		IGSF6|p.E205K|1|0.21|ENSG00000140749|chr16:21643127-21643127|C/T|missense_variant	IGSF6|p.E205K|1|0.21|ENSG00000140749|chr16:21643127-21643127|C/T|missense_variant	IGSF6|p.E205K|1|0.21|ENSG00000140749|chr16:21643127-21643127|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	373.600830078125	3	373.564614	1117.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.587	1	28.265	27.765	28.765	0.67857								0	0	0	0.15356	1	9443	9443		15.739	0.49014	1				46444	14146	33822	34092	45370	45370					0.1178822210808903
SARRVLQQF	9	Unmodified	_SARRVLQQF_					0	0	0		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000507353.1_1_5:118861592-118865690:+|nuORF;ENST00000442060.7_1_5:118860916-118866997:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	369.2806091308594	3	368.880602	1103.61998	0.24711	9.1155E-05	-0.17041	-6.2859E-05	0.076708	2.8296E-05	368.88053646352677	33.312	0.60848	33.312	33.09	33.698	0					31	11	4	0	0	0	0.48411	1	10846	10846		20.581	8.3403	1	22026000			46445	4532	33823	34093	45371	45371					0.07231058694310377
SARRVLQQF	9	Unmodified	_SARRVLQQF_					0	0	0		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000507353.1_1_5:118861592-118865690:+|nuORF;ENST00000442060.7_1_5:118860916-118866997:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	553.216796875	2	552.817264	1103.61998	-0.58956	-0.00032592	-0.1975	-0.00010918	-0.78706	-0.0004351	552.8172171983224	33.317	0.35645	33.317	33.14	33.496	0					12	6	2	0	0	0	0.095851	1	10851	10851		56.177	20.133	1	15052000			46446	4532	33823	34093	45372	45372					0.07231058694310377
SARRVLQQF	9	Unmodified	_SARRVLQQF_					0	0	0		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000507353.1_1_5:118861592-118865690:+|nuORF;ENST00000442060.7_1_5:118860916-118866997:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	369.2806701660156	3	368.880602	1103.61998	0.21641	7.9829E-05	-0.28583	-0.00010544	-0.069417	-2.5607E-05	368.88048515823596	32.4	0.56012	33.137	32.857	33.417	0.73692					24	10	3	0	0	0	0.58268	1	11505	11505		15.739	0.49014	1	24594000			46447	4532	33823	34093	45373	45373					0.07231058694310377
SARRVLQQF	9	Unmodified	_SARRVLQQF_					0	0	0		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000507353.1_1_5:118861592-118865690:+|nuORF;ENST00000442060.7_1_5:118860916-118866997:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	552.67138671875	2	552.817264	1103.61998	-0.81199	-0.00044888	-0.070165	-3.8788E-05	-0.88215	-0.00048767	552.8171977775272	32.4	0.40803	33.137	32.909	33.317	0.73692					13	7	2	0	0	0	0.67323	1	11513	11513		24.991	12.459	1	13472000			46448	4532	33823	34093	45374	45374					0.07231058694310377
SARRVLQQF	9	Unmodified	_SARRVLQQF_					0	0	0		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000507353.1_1_5:118861592-118865690:+|nuORF;ENST00000442060.7_1_5:118860916-118866997:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	368.880602	1103.61998	0.21641	7.9829E-05	-0.28583	-0.00010544	-0.069417	-2.5607E-05	368.88048515823596	32.4	0.56012	33.137	32.857	33.417	0.73692	-0.087359	-3.7437E-05	NaN	20.581	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24594000			46449	4532	33823	34093							0.07231058694310377
SARSFLYEVE	10	Unmodified	_SARSFLYEVE_					0	0	0			REV__ENST00000501499.1_1_12:98880649-98880853:-|nuORF	REV__ENST00000501499.1_1_12:98880649-98880853:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	401.1290283203125	3	400.868027	1199.58225	-0.18715	-7.5022E-05	-0.46693	-0.00018718	-0.65407	-0.0002622	401.2022488176431	35.854	0.35643	36.617	36.435	36.792	0.76338					10	6	2	0	0	0	0.71245	1	12972	12972		3.5871	0.95582	1	1050500	+		46450	25492	33824	34094	45375	45375					-0.009554970818271613
SASDYFKAM	9	Unmodified	_SASDYFKAM_					0	0	0		ENSG00000198642|ENST00000359039|KLHL9;KLHL9|p.M432*|1|0.89|ENSG00000198642|chr9:21333566-21333566|T/-|frameshift_variant;nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13	ENSG00000198642|ENST00000359039|KLHL9	ENSG00000198642|ENST00000359039|KLHL9	MULTI-SECPEP	A375_MHC_IP_R2	2	510.4510498046875	2	510.228768	1018.44298	-1.1582	-0.00059093	0.55712	0.00028426	-0.60104	-0.00030667	510.2294342172697	59.301	0.35583	60.048	59.742	60.098	0.74714					8	6	2	0	0	0	0.59098	1	22400	22400		21.537	4.5947	1	540700			46451	9293	33825	34095	45376	45376					-0.06550157970832515
SASEALKHPWL	11	Unmodified	_SASEALKHPWL_					0	0	0		nc|ENSG00000145949|Q86YV6-2|MYLK4;ENSG00000145949|ENST00000274643|MYLK4	nc|ENSG00000145949|Q86YV6-2|MYLK4	nc|ENSG00000145949|Q86YV6-2|MYLK4	MULTI-SECPEP	A375_MHC_IP_R1	1	413.6432800292969	3	413.555784	1237.64552	0.60102	0.00024856	-2.9968	-0.0012394	-2.3958	-0.00099081	413.55730794896584	21.883	0.50931	21.883	21.706	22.216	0					16	9	3	0	0	0	0.99681	1	5830	5830		2.4348	0.69251	1	1234700			46452	5595	33826	34096	45377	45377					0.03620488426076918
SASEPQRDP	9	Unmodified	_SASEPQRDP_					0	0	0		ENST00000595684.5_1_19:17660373-17660589:+|nuORF	ENST00000595684.5_1_19:17660373-17660589:+|nuORF	ENST00000595684.5_1_19:17660373-17660589:+|nuORF	MSMS	A375_MHC_IP_R2	2	493.6637268066406	2	493.73052	985.446488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.288	1	94.027	93.527	94.527	0.73902								0	0	0	0.1493	1	35467	35467		22.736	0.98964	1				46453	13837	33827	34097	45378	45378					-0.04681771872617446
SASGSDWVTI	10	Unmodified	_SASGSDWVTI_					0	0	0		ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-MSMS	A375_MHC_IP_R1	1	512.1889038085938	2	511.743096	1021.47164	-0.43611	-0.00022317	-1.3112	-0.00067097	-1.7473	-0.00089415	511.74248785243924	98.532	0.4614	98.532	98.3	98.762	0					12	8	2	0	0	0	0.6806	1	36239	36239		14.838	2.3067	1	623680			46454	1809	33828	34098	45379	45379					-0.03823717070042676
SASKPLASW	9	Unmodified	_SASKPLASW_					0	0	0		ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENSG00000087008|ENST00000356406|ACOX3	ENSG00000087008|ENST00000356406|ACOX3	MULTI-MSMS	A375_MHC_IP_R1	1	474.1532897949219	2	473.753267	945.491981	0.10114	4.7913E-05	0.45308	0.00021465	0.55421	0.00026256	473.7535845220563	44.954	0.71166	44.954	44.42	45.132	0					18	13	2	0	0	0	0.029064	1	15702	15702		75.761	23.492	1	2550900			46455	1849	33829	34099	45380	45380					0.017054983804200674
SASKPLASW	9	Unmodified	_SASKPLASW_					0	0	0		ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENSG00000087008|ENST00000356406|ACOX3	ENSG00000087008|ENST00000356406|ACOX3	MULTI-MSMS	A375_MHC_IP_R2	2	474.1533508300781	2	473.753267	945.491981	-0.36523	-0.00017303	0.18095	8.5726E-05	-0.18428	-8.7303E-05	473.7533259910424	43.964	0.5549	44.733	44.43	44.985	0.76909					16	10	2	0	0	0	0.024574	1	16421	16421		79.596	27.328	1	2189900			46456	1849	33829	34099	45381	45381					0.017054983804200674
SASLKDLCL	9	Unmodified	_SASLKDLCL_					0	0	0		nc|ENSG00000150477|Q86T90-2|KIAA1328;ENSG00000150477|ENST00000280020|KIAA1328	nc|ENSG00000150477|Q86T90-2|KIAA1328	nc|ENSG00000150477|Q86T90-2|KIAA1328	MSMS	A375_MHC_IP_R1	1	475.191650390625	2	475.254785	948.495018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.424	1	93.424	92.924	93.924	0								0	0	0	0.14677	1	34341	34341		26.884	1.4843	1				46457	5846	33830	34100	45382	45382					0.018710054429107004
SASLKDLCL	9	Unmodified	_SASLKDLCL_					0	0	0		nc|ENSG00000150477|Q86T90-2|KIAA1328;ENSG00000150477|ENST00000280020|KIAA1328	nc|ENSG00000150477|Q86T90-2|KIAA1328	nc|ENSG00000150477|Q86T90-2|KIAA1328	MSMS	A375_MHC_IP_R2	2	475.19158935546875	2	475.254785	948.495018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.554	1	93.293	92.793	93.793	0.73902								0	0	0	0.14359	1	35197	35197		28.487	1.6032	1				46458	5846	33830	34100	45383	45383					0.018710054429107004
SASLPRSY	8	Unmodified	_SASLPRSY_					0	0	0		nc|ENSG00000136153|Q8WWI1-3|LMO7;ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7;nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7	nc|ENSG00000136153|Q8WWI1-3|LMO7	nc|ENSG00000136153|Q8WWI1-3|LMO7	MSMS	A375_MHC_IP_R2	2	440.397705078125	2	440.729792	879.445031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.353	1	29.031	28.531	29.531	0.67857								0	0	0	0.16876	1	9777	9777		39.95	13.608	1				46459	4759	33831	34101	45384	45384					0.000486388292756601
SASLSYEVSD	10	Unmodified	_SASLSYEVSD_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;USH2A|p.V2904Tfs*33|1|0.04|ENSG00000042781|chr1:215867142-215867143|CG/-|frameshift_variant;USH2A|p.P2489L|1|0.16|ENSG00000042781|chr1:215900203-215900203|G/A|missense_variant	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MULTI-MSMS	A375_MHC_IP_R1	1	529.1713256835938	2	529.237844	1056.46113	-0.43628	-0.0002309	-0.043126	-2.2824E-05	-0.47941	-0.00025372	529.2377808438893	62.573	0.76841	62.573	62.198	62.966	0					35	14	3	0	0	0	0.62155	1	22568	22568		19.257	19.257	1	10997000			46460	1177	33832	34102	45385	45385					-0.06483744515139733
SASPDATIRIW	11	Unmodified	_SASPDATIRIW_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-SECPEP	A375_MHC_IP_R1	1	609.2191772460938	2	608.81967	1215.62479	-0.49056	-0.00029867	0.20741	0.00012628	-0.28315	-0.00017239	608.8198413829764	80.667	0.55761	80.667	80.39	80.948	0					31	10	4	0	0	0	0.041103	1	29430	29430		77.049	45.011	1	29869000			46461	2921	33833	34103	45386	45386					0.025598980464110355
SASPPHSF	8	Unmodified	_SASPPHSF_					0	0	0			REV__ENST00000411466.6_3_16:30709553-30715400:+|nuORF	REV__ENST00000411466.6_3_16:30709553-30715400:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	415.5953369140625	2	415.195585	828.376617	-0.30663	-0.00012731	-0.13707	-5.6911E-05	-0.4437	-0.00018422	415.1954671964688	58.347	0.45768	59.096	58.779	59.237	0.74894					13	8	2	0	0	0	0.72761	1	22057	22057		26.341	0	1	1652600	+		46462	24480	33834	34104	45387	45387					-0.044436057505663484
SASQLHHH	8	Unmodified	_SASQLHHH_					0	0	0			REV__ENST00000355480.9_2_21:46875829-46888416:+|nuORF	REV__ENST00000355480.9_2_21:46875829-46888416:+|nuORF	MSMS	A375_MHC_IP_R2	2	458.6662292480469	2	458.722833	915.431112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.3	1	36.063	35.563	36.563	0.76338								0	0	0	0.16876	1	12792	12792		13.508	0.97634	1		+		46463	23821	33835	34105	45388	45388					-0.02998593879146938
SASRLSLSV	9	Unmodified	_SASRLSLSV_					0	0	0			REV__ENST00000592802.1_1_17:73847561-73851408:-|nuORF	REV__ENST00000592802.1_1_17:73847561-73851408:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	459.6555480957031	2	460.263999	918.513445	-0.97277	-0.00044773	1.3119	0.00060381	0.33911	0.00015608	460.2647908491226	36.818	0.30595	37.589	37.41	37.716	0.7709					8	5	2	0	0	0	0.46045	1	13437	13437		29.082	15.176	1	1019000	+		46464	26452	33836	34106	45389	45389					0.05092883409145088
SASSFFKEL	9	Unmodified	_SASSFFKEL_					0	0	0		nc|nan|Q8NDD1-7|C1orf131;ENST00000471936.1_1_1:231374554-231376902:-|nuORF;nc|nan|Q8NDD1-6|C1orf131;ENSG00000143633|ENST00000366649|C1orf131;nc|nan|Q8NDD1-5|C1orf131	nc|nan|Q8NDD1-7|C1orf131	nc|nan|Q8NDD1-7|C1orf131	MULTI-MSMS	A375_MHC_IP_R1	1	508.65765380859375	2	508.258382	1014.50221	-0.31876	-0.00016201	-1.2722	-0.00064663	-1.591	-0.00080864	508.2580269048117	78.08	0.76385	78.08	77.69	78.454	0					33	14	3	0	0	0	0.095851	1	28472	28472		51.415	5.3943	1	5829300			46465	5419	33837	34107	45390	45390					-0.004459386849816838
SASSLARAY	9	Unmodified	_SASSLARAY_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	A375_MHC_IP_R1	1	463.6403503417969	2	463.240524	924.466495	-0.24156	-0.0001119	-0.013865	-6.4229E-06	-0.25543	-0.00011833	463.24044917392104	28.364	0.6065	28.364	28.088	28.694	0					27	11	3	0	0	0	0.007896	1	8721	8721		129.77	37.281	1	24523000			46466	2516	33838	34108	45391	45391					0.0012402385799532567
SASSLARAY	9	Unmodified	_SASSLARAY_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	A375_MHC_IP_R2	2	463.64031982421875	2	463.240524	924.466495	-0.55016	-0.00025486	0.20573	9.5304E-05	-0.34443	-0.00015955	463.24060075090006	27.698	0.55676	28.376	28.149	28.706	0.67857					23	10	3	0	0	0	0.0037351	1	9483	9483		137.42	44.932	1	26659000			46467	2516	33838	34108	45392	45392					0.0012402385799532567
SASSVIRKL	9	Unmodified	_SASSVIRKL_					0	0	0		ENST00000311669.12_1_15:73064176-73067334:-|nuORF	ENST00000311669.12_1_15:73064176-73067334:-|nuORF	ENST00000311669.12_1_15:73064176-73067334:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	480.47174072265625	2	480.795466	959.57638	-0.62457	-0.00030029	-0.43915	-0.00021114	-1.0637	-0.00051143	480.79520632015124	28.956	0.25285	28.956	28.845	29.098	0					6	4	2	0	0	0	0.73008	1	9027	9027		12.241	4.0851	1	1369600			46468	10631	33839	34109	45393	45393					0.09497449197192509
SASTCPPLL	9	Unmodified	_SASTCPPLL_					0	0	0			REV__ENST00000303575.8_1_14:75601464-75601584:-|nuORF	REV__ENST00000303575.8_1_14:75601464-75601584:-|nuORF	MSMS	A375_MHC_IP_R2	2	444.6689758300781	2	444.728403	887.442254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.252	1	59.001	58.501	59.501	0.74894								0	0	0	0.15486	1	22036	22036		8.5933	0.68312	1		+		46469	23448	33840	34110	45394	45394					-0.005969526198668973
SASVKLAL	8	Unmodified	_SASVKLAL_					0	0	0		ENST00000367088.1_1_6:159057555-159057609:-|nuORF	ENST00000367088.1_1_6:159057555-159057609:-|nuORF	ENST00000367088.1_1_6:159057555-159057609:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	395.1475524902344	2	394.747453	787.480354	0.1562	6.1661E-05	0.30345	0.00011979	0.45965	0.00018145	394.7474990682314	51.609	0.81456	51.609	51.27	52.085	0					37	15	4	0	0	0	0.095167	1	18273	18273		107.19	39.106	1	21802000			46470	11077	33841	34111	45395	45395					0.0781130135709418
SASVKLAL	8	Unmodified	_SASVKLAL_					0	0	0		ENST00000367088.1_1_6:159057555-159057609:-|nuORF	ENST00000367088.1_1_6:159057555-159057609:-|nuORF	ENST00000367088.1_1_6:159057555-159057609:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	395.1474914550781	2	394.747453	787.480354	-0.27508	-0.00010859	0.38855	0.00015338	0.11346	4.479E-05	394.7475688374876	50.644	0.80843	51.398	51.057	51.866	0.75406					37	15	3	0	0	0	0.095167	1	18995	18995		118.89	40.745	1	21050000			46471	11077	33841	34111	45396	45396					0.0781130135709418
SASVRGLAF	9	Unmodified	_SASVRGLAF_					0	0	0		ENST00000457535.5_1_1:110950486-110954860:+|nuORF	ENST00000457535.5_1_1:110950486-110954860:+|nuORF	ENST00000457535.5_1_1:110950486-110954860:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	454.6533508300781	2	454.253434	906.492316	-0.1062	-4.8242E-05	0.22034	0.00010009	0.11414	5.1848E-05	454.25335379491906	56.485	0.50871	56.485	56.244	56.753	0					18	9	3	0	0	0	0.027818	1	20249	20249		76.825	34.985	1	2851700			46472	12140	33842	34112	45397	45397					0.03532918100279403
SASVRGLAF	9	Unmodified	_SASVRGLAF_					0	0	0		ENST00000457535.5_1_1:110950486-110954860:+|nuORF	ENST00000457535.5_1_1:110950486-110954860:+|nuORF	ENST00000457535.5_1_1:110950486-110954860:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	454.65313720703125	2	454.253434	906.492316	-0.29861	-0.00013564	0.4291	0.00019492	0.13049	5.9277E-05	454.2533157918068	55.566	0.55728	56.317	56.034	56.591	0.75075					21	10	3	0	0	0	0.027818	1	21009	21009		76.825	34.985	1	3050400			46473	12140	33842	34112	45398	45398					0.03532918100279403
SATDAAIRVW	10	Unmodified	_SATDAAIRVW_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-SECPEP	A375_MHC_IP_R1	1	545.68798828125	2	545.288005	1088.56146	-0.6997	-0.00038154	1.1263	0.00061414	0.42657	0.00023261	545.2887303932334	68.522	0.66001	68.522	68.26	68.92	0					26	12	3	0	0	0	0.021882	1	24836	24836		107.1	79.471	1	7380000			46474	8524	33843	34113	45399	45399					0.020719573291671622
SATDAAIRVW	10	Unmodified	_SATDAAIRVW_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-SECPEP	A375_MHC_IP_R2	2	545.68798828125	2	545.288005	1088.56146	-0.75669	-0.00041261	0.84192	0.00045909	0.085236	4.6478E-05	545.2885147814189	67.733	0.8653	68.47	68.104	68.969	0.73631					26	16	2	0	0	0	0.016128	1	25637	25637		117.76	88.679	1	5427600			46475	8524	33843	34113	45400	45400					0.020719573291671622
SATEGVIKVW	10	Unmodified	_SATEGVIKVW_					0	0	0		ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1	ENSG00000157106|ENST00000446231|SMG1	ENSG00000157106|ENST00000446231|SMG1	MULTI-SECPEP	A375_MHC_IP_R1	1	545.68798828125	2	545.300581	1088.58661	-0.84262	-0.00045948	0.4766	0.00025989	-0.36602	-0.00019959	545.3007902810189	68.329	0.55978	68.329	67.955	68.514	0					22	10	3	0	0	0	0.76414	1	24836	24836		20.454	10.38	1	2834500			46476	6228	33844	34114	45401	45401					0.0458601213174461
SATFGSLSSCH	11	Unmodified	_SATFGSLSSCH_					0	0	0		ENST00000565934.1_1_16:8949035-8954137:+|nuORF	ENST00000565934.1_1_16:8949035-8954137:+|nuORF	ENST00000565934.1_1_16:8949035-8954137:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	549.6419067382812	2	548.740031	1095.46551	-0.62054	-0.00034051	-1.8778	-0.0010304	-2.4984	-0.001371	548.7379400132277	46.705	1.3222	47.466	46.801	48.123	0.76128					86	25	4	0	0	0	0.72801	1	17567	17567		10.8	0.72558	1	44056000			46477	13555	33845	34115	45402	45402					-0.0784055857320709
SATGLARYY	9	Unmodified	_SATGLARYY_					0	0	0		nc|ENSG00000153956|P54289-4|CACNA2D1;nc|ENSG00000153956|P54289-5|CACNA2D1;nc|ENSG00000153956|P54289-3|CACNA2D1;ENSG00000153956|ENST00000356860|CACNA2D1;nc|ENSG00000153956|P54289|CACNA2D1;ENST00000461275.1_1_7:81680257-81714133:-|nuORF	nc|ENSG00000153956|P54289-4|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	MULTI-MSMS	A375_MHC_IP_R1	1	501.7027893066406	2	501.256174	1000.49779	0.10134	5.0796E-05	-0.31562	-0.0001582	-0.21428	-0.00010741	501.25594713157307	45.156	0.95929	45.156	44.626	45.585	0					48	15	4	0	0	0	0.0090297	1	15864	15864		99.755	55.897	1	50517000			46478	6051	33846	34116	45403	45403					-0.002434031079133092
SATGLARYY	9	Unmodified	_SATGLARYY_					0	0	0		nc|ENSG00000153956|P54289-4|CACNA2D1;nc|ENSG00000153956|P54289-5|CACNA2D1;nc|ENSG00000153956|P54289-3|CACNA2D1;ENSG00000153956|ENST00000356860|CACNA2D1;nc|ENSG00000153956|P54289|CACNA2D1;ENST00000461275.1_1_7:81680257-81714133:-|nuORF	nc|ENSG00000153956|P54289-4|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	MULTI-SECPEP	A375_MHC_IP_R2	2	501.65576171875	2	501.256174	1000.49779	-0.54845	-0.00027491	-0.12298	-6.1643E-05	-0.67143	-0.00033656	501.25608643214474	44.291	0.91236	45.06	44.682	45.594	0.7691					57	17	5	0	0	0	0.011236	1	16470	16470		118.07	83.667	1	52732000			46479	6051	33846	34116	45404	45404					-0.002434031079133092
SATTSLRVL	9	Unmodified	_SATTSLRVL_					0	0	0		ENST00000503808.5_1_4:57204874-57250274:-|nuORF;nc|ENSG00000157426|Q4L235-3|AASDH;nc|ENSG00000157426|Q4L235-4|AASDH;nc|ENSG00000157426|Q4L235-2|AASDH;ENSG00000157426|ENST00000205214|AASDH;ENST00000514745.5_1_4:57219701-57248665:-|nuORF	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	474.67962646484375	2	474.279649	946.544745	-0.36366	-0.00017248	0.13763	6.5276E-05	-0.22603	-0.0001072	474.2797198499216	51.393	0.7101	51.393	51.068	51.778	0					37	13	4	0	0	0	0.061442	1	18199	18199		82.529	26.352	1	13775000			46480	6243	33847	34117	45405	45405					0.06933456443232444
SATTSLRVL	9	Unmodified	_SATTSLRVL_					0	0	0		ENST00000503808.5_1_4:57204874-57250274:-|nuORF;nc|ENSG00000157426|Q4L235-3|AASDH;nc|ENSG00000157426|Q4L235-4|AASDH;nc|ENSG00000157426|Q4L235-2|AASDH;ENSG00000157426|ENST00000205214|AASDH;ENST00000514745.5_1_4:57219701-57248665:-|nuORF	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	474.67950439453125	2	474.279649	946.544745	-0.70864	-0.0003361	0.28397	0.00013468	-0.42468	-0.00020142	474.2797622424333	50.434	0.60855	51.188	50.854	51.462	0.75406					28	11	3	0	0	0	0.019499	1	18931	18931		114.2	48.967	1	15932000			46481	6243	33847	34117	45406	45406					0.06933456443232444
SATVQPDSSY	10	Unmodified	_SATVQPDSSY_					0	0	0			REV__nc|ENSG00000112561|P19484-2|TFEB	REV__nc|ENSG00000112561|P19484-2|TFEB	MULTI-MSMS	A375_MHC_IP_R2	2	528.1376342773438	2	527.738011	1053.46147	-0.99372	-0.00052442	-0.019926	-1.0516E-05	-1.0136	-0.00053494	527.7379956362175	52.711	1.4234	53.462	53.082	54.505	0.75105					92	27	5	0	0	0	0.62015	1	20238	20238		19.362	0	1	207980000	+		46482	17738	33848	34118	45407	45407					-0.06312324795271707
SAVADVRLY	9	Unmodified	_SAVADVRLY_					0	0	0		ENSG00000069943|ENST00000164305|PIGB	ENSG00000069943|ENST00000164305|PIGB	ENSG00000069943|ENST00000164305|PIGB	MULTI-MSMS	A375_MHC_IP_R1	1	497.67156982421875	2	497.271824	992.529095	-0.44015	-0.00021887	0.51852	0.00025784	0.078368	3.897E-05	497.27168636044684	58.894	1.5239	58.894	57.873	59.397	0					41	29	2	0	0	0	0.033808	1	21138	21138		71.708	38.922	1	13448000			46483	1482	33849	34119	45408	45408					0.03253169926188093
SAVADVRLY	9	Unmodified	_SAVADVRLY_					0	0	0		ENSG00000069943|ENST00000164305|PIGB	ENSG00000069943|ENST00000164305|PIGB	ENSG00000069943|ENST00000164305|PIGB	MULTI-MSMS	A375_MHC_IP_R2	2	497.6710510253906	2	497.271824	992.529095	-0.77467	-0.00038522	0.42715	0.00021241	-0.34753	-0.00017282	497.27163764298655	58.086	1.6272	58.835	57.711	59.338	0.74894					45	31	2	0	0	0	0.033808	1	21944	21944		71.708	33.734	1	12488000			46484	1482	33849	34119	45409	45409					0.03253169926188093
SAVDFIRTL	9	Unmodified	_SAVDFIRTL_					0	0	0		ENSG00000164543|ENST00000319357|STK17A;STK17A|p.E292Q|1|0.2|ENSG00000164543|chr7:43623842-43623842|G/C|missense_variant;STK17A|p.S291F|1|0.44|ENSG00000164543|chr7:43623840-43623840|C/T|missense_variant	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	MULTI-MSMS	A375_MHC_IP_R1	1	511.6871032714844	2	511.287474	1020.5604	-0.41362	-0.00021148	-0.86004	-0.00043973	-1.2737	-0.00065121	511.2876128485499	98.085	1.9332	98.085	97.641	99.574	0					140	37	7	0	0	0	0.0024528	1	35978	35978		139.78	70.677	1	197830000			46485	6849	33850	34120	45410	45410					0.050937429602981865
SAVDFIRTL	9	Unmodified	_SAVDFIRTL_					0	0	0		ENSG00000164543|ENST00000319357|STK17A;STK17A|p.E292Q|1|0.2|ENSG00000164543|chr7:43623842-43623842|G/C|missense_variant;STK17A|p.S291F|1|0.44|ENSG00000164543|chr7:43623840-43623840|C/T|missense_variant	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	MULTI-MSMS	A375_MHC_IP_R2	2	511.6869812011719	2	511.287474	1020.5604	-0.93719	-0.00047917	-0.78844	-0.00040312	-1.7256	-0.00088229	511.2875759171332	97.175	2.133	97.931	97.419	99.552	0.75586					138	41	6	0	0	0	0.0095015	1	36829	36829		107.56	49.841	1	257820000			46486	6849	33850	34120	45411	45411					0.050937429602981865
SAVDLIYAR	9	Unmodified	_SAVDLIYAR_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-MSMS	A375_MHC_IP_R1	1	504.6796875	2	504.279649	1006.54475	-0.28421	-0.00014332	0.61148	0.00030836	0.32726	0.00016503	504.2799495442057	79.277	1.3265	79.277	78.657	79.983	0					41	25	3	0	0	0	0.27064	1	28925	28925		32.786	3.7041	1	4088300	+		46487	16952	33851	34121	45412	45412					0.041734564432204024
SAVDLIYAR	9	Unmodified	_SAVDLIYAR_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-SECPEP	A375_MHC_IP_R1	1	504.69781494140625	2	504.279649	1006.54475	-0.28421	-0.00014332	0.61148	0.00030836	0.32726	0.00016503	504.2799495442057	79.277	1.3265	79.277	78.657	79.983	0					41	25	3	0	0	0	0.5212	1	28984	28984		26.268	12.362	1	4088300	+		46488	16952	33851	34121	45413	45413					0.041734564432204024
SAVGHLSV	8	Unmodified	_SAVGHLSV_					0	0	0		ENST00000498689.5_1_20:54967438-54967576:+|nuORF	ENST00000498689.5_1_20:54967438-54967576:+|nuORF	ENST00000498689.5_1_20:54967438-54967576:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	385.2924499511719	2	385.213778	768.413003	-0.50769	-0.00019557	-0.085527	-3.2946E-05	-0.59322	-0.00022852	385.21384726202535	24.751	0.4556	25.395	25.263	25.719	0.64368					13	8	3	0	0	0	0.84748	1	8176	8176		28.487	3.813	1	4168500			46489	12764	33852	34122	45414	45414					0.019532711461465624
SAVISLEGKPL	11	Unmodified	_SAVISLEGKPL_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-SECPEP	A375_MHC_IP_R1	1	557.7294921875	2	557.329339	1112.64412	-0.45376	-0.00025289	0.53366	0.00029742	0.079898	4.453E-05	557.3295571757303	70.876	0.61338	70.876	70.545	71.159	0					32	11	4	0	0	0	0.13718	1	25723	25723		81.915	58.125	1	8914200			46490	7732	33853	34123	45415	45415					0.0923085433732922
SAVISLEGKPL	11	Unmodified	_SAVISLEGKPL_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-SECPEP	A375_MHC_IP_R2	2	557.7293090820312	2	557.329339	1112.64412	-0.68998	-0.00038455	0.43514	0.00024252	-0.25484	-0.00014203	557.3294094608257	70.066	0.7118	70.8	70.437	71.149	0.73421					32	13	4	0	0	0	0.062453	1	26537	26537		85.764	61.975	1	10435000			46491	7732	33853	34123	45416	45416					0.0923085433732922
SAVITSWTRPS	11	Unmodified	_SAVITSWTRPS_					0	0	0		ENST00000340738.9_2_14:73716757-73718374:+|nuORF;ENST00000216658.9_1_14:73716757-73718211:+|nuORF;PAPLN|p.K123Rfs*81|1|0.32|ENSG00000100767|chr14:73250013-73250013|C/-|frameshift_variant	ENST00000340738.9_2_14:73716757-73718374:+|nuORF	ENST00000340738.9_2_14:73716757-73718374:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	401.5968017578125	3	402.215539	1203.62479	-0.47972	-0.00019295	1.2524	0.00050373	0.77266	0.00031078	402.21560435804804	19.546	0.50792	19.546	19.268	19.776	0					15	9	2	0	0	0	0.9889	1	4673	4673		2.2527	0.51045	1	1887400			46492	10097	33854	34124	45417	45417					0.031118980464498236
SAVKEELKY	9	Unmodified	_SAVKEELKY_					0	0	0		nc|ENSG00000096070|Q9ULD4-3|BRPF3;nc|ENSG00000096070|Q9ULD4-2|BRPF3;ENSG00000096070|ENST00000357641|BRPF3	nc|ENSG00000096070|Q9ULD4-3|BRPF3	nc|ENSG00000096070|Q9ULD4-3|BRPF3	MULTI-SECPEP	A375_MHC_IP_R2	2	355.4600524902344	3	356.197485	1065.57063	-0.35439	-0.00012623	0.22966	8.1804E-05	-0.12472	-4.4427E-05	356.1975329437905	39.195	0.66193	39.97	39.658	40.32	0.77451					19	12	2	0	0	0	0.78348	1	14388	14388		0.20686	0	1	1879800			46493	2054	33855	34125	45418	45418					0.04046305894848956
SAVKFVQE	8	Unmodified	_SAVKFVQE_					0	0	0			REV__ENST00000487376.5_1_6:30698694-30708587:-|nuORF	REV__ENST00000487376.5_1_6:30698694-30708587:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	454.6474304199219	2	454.247818	906.481082	-0.36871	-0.00016749	0.34423	0.00015636	-0.024488	-1.1124E-05	454.2479117118094	47.029	0.61507	47.029	46.596	47.211	0					16	11	2	0	0	0	0.70206	1	16538	16538		34.102	7.8343	1	3556200	+		46494	18999	33856	34126	45419	45419					0.02410096006144613
SAVLLHAPLA	10	Unmodified	_SAVLLHAPLA_					0	0	0			REV__ENSG00000213588|ENST00000395064|ZBTB9	REV__ENSG00000213588|ENST00000395064|ZBTB9	MULTI-SECPEP	A375_MHC_IP_R2	2	496.16009521484375	2	496.300384	990.586216	-0.44038	-0.00021856	1.0798	0.00053588	0.63937	0.00031732	496.30081754595903	103.61	0.30446	104.38	104.24	104.55	0.76428					11	5	3	0	0	0	0.78945	1	39223	39223		19.257	2.3147	1	720350	+		46495	22625	33857	34127	45420	45420					0.09054637202541471
SAVNIINFKV	10	Unmodified	_SAVNIINFKV_					0	0	0			REV__tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1	REV__tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1	MSMS	A375_MHC_IP_R1	1	368.89794921875	3	368.885241	1103.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.207	1	28.207	27.707	28.707	0								0	0	0	0.15464	1	8671	8671		5.7834	0.38072	1		+		46496	28570	33858	34128	45421	45421					0.08622291402753035
SAVNQAIFV	9	Unmodified	_SAVNQAIFV_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4;REV__nc|ENSG00000127481|Q5T4S7-5|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	A375_MHC_IP_R2	2	475.67071533203125	2	474.761092	947.507631	-0.50022	-0.00023749	-0.28661	-0.00013607	-0.78683	-0.00037356	474.7610103079803	63.038	0.50687	63.781	63.584	64.091	0.74263					20	9	3	0	0	0	0.46038	1	23926	23926		21.747	1.293	1	2446500	+		46497	18422;27212	33859	34129	45422	45422					0.031777848974684275
SAVNVFTGTV	10	Unmodified	_SAVNVFTGTV_					0	0	0		ENST00000376681.7_1_17:46840236-46881289:-|nuORF;nc|ENSG00000170703|Q8N841-3|TTLL6;ENSG00000170703|ENST00000393382|TTLL6;nc|ENSG00000170703|Q8N841-2|TTLL6	ENST00000376681.7_1_17:46840236-46881289:-|nuORF	ENST00000376681.7_1_17:46840236-46881289:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	497.6476745605469	2	497.763832	993.513111	-0.5022	-0.00024997	1.5931	0.00079299	1.0909	0.00054301	497.76464464954404	76.701	1.0139	77.442	76.994	78.008	0.74052					23	19	2	0	0	0	0.63639	1	29226	29226		18.146	2.8979	1	1800400			46498	7532	33860	34130	45423	45423					0.016094636892944436
SAVPKRSW	8	Unmodified	_SAVPKRSW_					0	0	0		ENST00000466860.5_1_1:12082310-12089454:+|nuORF;nc|ENSG00000116691|Q5JXC2-2|MIIP;ENSG00000116691|ENST00000235332|MIIP	ENST00000466860.5_1_1:12082310-12089454:+|nuORF	ENST00000466860.5_1_1:12082310-12089454:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	465.6089172363281	2	465.761426	929.5083	-0.5348	-0.00024909	1.4141	0.00065864	0.87931	0.00040955	465.7616196079428	30.78	0.60739	30.78	30.351	30.959	0					16	11	2	0	0	0	0.8957	1	9822	9822		21.747	2.4897	1	1915100			46499	3420	33861	34131	45424	45424					0.04072624337186426
SAVPYLVHN	9	Unmodified	_SAVPYLVHN_					0	0	0			REV__ENSG00000063601|ENST00000445323|MTMR1;REV__nc|ENSG00000087053|Q13614-2|MTMR2	REV__ENSG00000063601|ENST00000445323|MTMR1	MULTI-MSMS	A375_MHC_IP_R1	1	500.1853332519531	2	500.266542	998.51853	-0.38123	-0.00019071	0.16285	8.1469E-05	-0.21838	-0.00010925	500.2665086167265	74.227	0.50706	74.227	73.995	74.502	0					23	9	3	0	0	0	0.4867	1	27103	27103		20.454	1.1966	1	4849000	+		46500	16470;16861	33862	34132	45425	45425					0.01921187271761937
SAVPYLVHN	9	Unmodified	_SAVPYLVHN_					0	0	0			REV__ENSG00000063601|ENST00000445323|MTMR1;REV__nc|ENSG00000087053|Q13614-2|MTMR2	REV__ENSG00000063601|ENST00000445323|MTMR1	MULTI-MSMS	A375_MHC_IP_R2	2	500.1848449707031	2	500.266542	998.51853	-0.51447	-0.00025737	0.16092	8.0504E-05	-0.35355	-0.00017687	500.2665532822585	73.381	0.50974	74.116	73.836	74.345	0.73541					17	9	2	0	0	0	0.51106	1	27913	27913		19.257	0	1	5384400	+		46501	16470;16861	33862	34132	45426	45426					0.01921187271761937
SAVSSFFRV	9	Unmodified	_SAVSSFFRV_					0	0	0			REV__ENST00000589799.5_1_19:44740380-44740701:-|nuORF	REV__ENST00000589799.5_1_19:44740380-44740701:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	500.66632080078125	2	500.266542	998.51853	-0.51447	-0.00025737	0.16092	8.0504E-05	-0.35355	-0.00017687	500.2665532822585	73.381	0.50974	74.116	73.836	74.345	0.73541					17	9	2	0	0	0	0.13064	1	27820	27820		56.177	7.8312	1	5384400	+		46502	26426	33863	34133	45427	45427					0.01921187271773306
SAVSSRNFEL	10	Unmodified	_SAVSSRNFEL_					0	0	0			REV__ENSG00000130589|ENST00000467148|HELZ2	REV__ENSG00000130589|ENST00000467148|HELZ2	MULTI-MSMS	A375_MHC_IP_R2	2	370.5894470214844	3	370.524372	1108.55129	-0.0016974	-6.2894E-07	-0.37812	-0.0001401	-0.37981	-0.00014073	370.5241753549515	22.815	0.91786	23.445	23.01	23.928	0.63014					19	17	2	0	0	0	0.72392	1	7428	7428		1.5923	0.13716	1	9181500	+		46503	18549	33864	34134	45428	45428					0.001353496039428137
SAVTAKIMEK	10	Unmodified	_SAVTAKIMEK_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MSMS	A375_MHC_IP_R2	2	359.92919921875	3	359.870603	1076.58998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.806	1	27.466	26.966	27.966	0.65992								0	0	0	0.14998	1	9096	9096		17.863	4.8207	1		+		46504	22304	33865	34135	45429	45429					0.05474938914107952
SAVVDKDFLD	10	Unmodified	_SAVVDKDFLD_					0	0	0		nc|ENSG00000156110|P55263-2|ADK;ENSG00000156110|ENST00000539909|ADK;nc|ENSG00000156110|P55263-3|ADK;nc|ENSG00000156110|P55263-4|ADK	nc|ENSG00000156110|P55263-2|ADK	nc|ENSG00000156110|P55263-2|ADK	MULTI-SECPEP	A375_MHC_IP_R1	1	369.5771179199219	3	370.188878	1107.5448	0.04856	1.7976E-05	1.0648	0.00039419	1.1134	0.00041217	370.1892806094282	23.863	0.40534	23.863	23.737	24.143	0					11	7	2	0	0	0	0.8528	1	6596	6596		10.315	0	1	6254100			46505	6174	33866	34136	45430	45430					-0.00466588347421748
SAVVMTYW	8	Unmodified	_SAVVMTYW_					0	0	0		nc|ENSG00000165246|Q8NFZ3|NLGN4Y;ENSG00000146938|ENST00000381095|NLGN4X;nc|ENSG00000146938|Q8N0W4-2|NLGN4X;ENSG00000165246|ENST00000684976|NLGN4Y;nc|ENSG00000165246|Q8NFZ3-2|NLGN4Y;ENST00000477079.1_1_X:5762523-5821281:-|nuORF;nc|ENSG00000169760|Q8N2Q7-2|NLGN1;ENSG00000169760|ENST00000695368|NLGN1;nc|ENSG00000169760|Q8N2Q7|NLGN1;ENSG00000169992|ENST00000302926|NLGN2;nc|ENSG00000196338|Q9NZ94-3|NLGN3;nc|ENSG00000196338|Q9NZ94-2|NLGN3;ENSG00000196338|ENST00000358741|NLGN3	nc|ENSG00000165246|Q8NFZ3|NLGN4Y;nc|ENSG00000169760|Q8N2Q7-2|NLGN1;ENSG00000169992|ENST00000302926|NLGN2;nc|ENSG00000196338|Q9NZ94-3|NLGN3	nc|ENSG00000165246|Q8NFZ3|NLGN4Y	MULTI-SECPEP	A375_MHC_IP_R1	1	479.1739196777344	2	478.730946	955.447339	-0.51435	-0.00024623	-0.96509	-0.00046202	-1.4794	-0.00070825	478.7309506518058	34.344	0.40495	34.344	34.052	34.456	0					12	7	3	0	0	0	0.69059	1	11291	11291		46.921	0	1	3016200			46506	5646;7436;9027;7462	33867	34137	45431	45431					-0.03216648757256735
SAVVRNAL	8	Unmodified	_SAVVRNAL_					0	0	0		ENSG00000168672|ENST00000304916|LRATD2	ENSG00000168672|ENST00000304916|LRATD2	ENSG00000168672|ENST00000304916|LRATD2	MULTI-MSMS	A375_MHC_IP_R1	1	415.648193359375	2	415.248152	828.481751	-0.085196	-3.5377E-05	0.0043015	1.7862E-06	-0.080894	-3.3591E-05	415.248082002357	29.695	0.39501	29.695	29.504	29.899	0					11	7	2	0	0	0	0.092435	1	9357	9357		96.285	28.941	1	11335000			46507	7333	33868	34138	45432	45432					0.06064935445840547
SAVVRNAL	8	Unmodified	_SAVVRNAL_					0	0	0		ENSG00000168672|ENST00000304916|LRATD2	ENSG00000168672|ENST00000304916|LRATD2	ENSG00000168672|ENST00000304916|LRATD2	MULTI-MSMS	A375_MHC_IP_R2	2	415.64727783203125	2	415.248152	828.481751	-0.81146	-0.00033696	-0.027017	-1.1219E-05	-0.83848	-0.00034818	415.24805448618514	28.973	0.24593	29.672	29.584	29.83	0.69872					6	4	2	0	0	0	0.31691	1	10131	10131		57.471	11.45	1	5888200			46508	7333	33868	34138	45433	45433					0.06064935445840547
SAWISKPPGV	10	Unmodified	_SAWISKPPGV_					0	0	0		nc|ENSG00000100146|P56693|SOX10;chr22:37984441-37987345|453|15.29|0.34|5.48|-|ENST00000360880|SOX10,SOX10	nc|ENSG00000100146|P56693|SOX10	nc|ENSG00000100146|P56693|SOX10	MULTI-MSMS	A375_MHC_IP_R1	1	521.6892700195312	2	521.290017	1040.56548	-0.41241	-0.00021499	0.047646	2.4837E-05	-0.36477	-0.00019015	521.2900847781381	62.925	0.46043	62.925	62.609	63.069	0					14	8	2	0	0	0	0.51509	1	22749	22749		27.223	10.11	1	2374900			46509	471	33869	34139	45434	45434					0.0468204682290434
SAWMCAGGVT	10	Unmodified	_SAWMCAGGVT_					0	0	0		ENST00000381440.4_1_16:19126483-19126618:+|nuORF	ENST00000381440.4_1_16:19126483-19126618:+|nuORF	ENST00000381440.4_1_16:19126483-19126618:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	492.1090087890625	2	491.709688	981.404823	-0.29079	-0.00014298	-0.70967	-0.00034895	-1.0005	-0.00049193	491.7095339256688	81.617	0.35393	81.617	81.404	81.758	0					11	6	2	0	0	0	0.83355	1	29841	29841		17.113	0	1	1681200			46510	11373	33870	34140	45435	45435					-0.08662367157148765
SAYARLIDY	9	Unmodified	_SAYARLIDY_					0	0	0		nc|ENSG00000182199|P34897-3|SHMT2;nc|ENSG00000182199|P34897-2|SHMT2;ENSG00000182199|ENST00000328923|SHMT2;ENST00000557433.5_1_12:57625333-57628141:+|nuORF;ENST00000553837.5_1_12:57625333-57628141:+|nuORF;ENST00000555774.5_1_12:57624752-57628141:+|nuORF;ENST00000556825.5_1_12:57623475-57628141:+|nuORF;ENST00000557348.5_1_12:57623887-57628141:+|nuORF;ENST00000554467.5_1_12:57626145-57626750:+|nuORF	nc|ENSG00000182199|P34897-3|SHMT2	nc|ENSG00000182199|P34897-3|SHMT2	MULTI-SECPEP	A375_MHC_IP_R1	1	536.7236938476562	2	536.277106	1070.53966	-0.93981	-0.000504	0.45729	0.00024524	-0.48251	-0.00025876	536.2773509732488	66.663	0.66251	66.663	66.377	67.04	0					27	12	3	0	0	0	0.35628	1	24109	24109		47.732	3.7501	1	10603000			46511	8388	33871	34141	45436	45436					0.007211525806269492
SAYARLIDY	9	Unmodified	_SAYARLIDY_					0	0	0		nc|ENSG00000182199|P34897-3|SHMT2;nc|ENSG00000182199|P34897-2|SHMT2;ENSG00000182199|ENST00000328923|SHMT2;ENST00000557433.5_1_12:57625333-57628141:+|nuORF;ENST00000553837.5_1_12:57625333-57628141:+|nuORF;ENST00000555774.5_1_12:57624752-57628141:+|nuORF;ENST00000556825.5_1_12:57623475-57628141:+|nuORF;ENST00000557348.5_1_12:57623887-57628141:+|nuORF;ENST00000554467.5_1_12:57626145-57626750:+|nuORF	nc|ENSG00000182199|P34897-3|SHMT2	nc|ENSG00000182199|P34897-3|SHMT2	MULTI-MSMS	A375_MHC_IP_R2	2	536.6764526367188	2	536.277106	1070.53966	-1.07	-0.0005738	0.29503	0.00015822	-0.77494	-0.00041558	536.2772355299301	65.834	0.71283	66.572	66.324	67.037	0.73812					29	13	3	0	0	0	0.41879	1	24939	24939		23.79	0	1	8122900			46512	8388	33871	34141	45437	45437					0.007211525806269492
SAYGEPRKL	9	Unmodified	_SAYGEPRKL_					0	0	0		ENSG00000198681|ENST00000356661|MAGEA1;MAGEA1|p.E228K|1|0.68|ENSG00000198681|chrX:153183071-153183071|G/A|missense_variant	ENSG00000198681|ENST00000356661|MAGEA1	ENSG00000198681|ENST00000356661|MAGEA1	MULTI-SECPEP	A375_MHC_IP_R1	1	511.1766662597656	2	510.777274	1019.53999	-0.30969	-0.00015818	-0.36759	-0.00018776	-0.67728	-0.00034594	510.77704040003425	20.562	0.81424	20.562	20.334	21.148	0					47	15	4	0	0	0	0.011308	1	5281	5281		117.76	77.811	1	18458000			46513	9298	33872	34142	45438	45438					0.031005723004682295
SAYGEPRKL	9	Unmodified	_SAYGEPRKL_					0	0	0		ENSG00000198681|ENST00000356661|MAGEA1;MAGEA1|p.E228K|1|0.68|ENSG00000198681|chrX:153183071-153183071|G/A|missense_variant	ENSG00000198681|ENST00000356661|MAGEA1	ENSG00000198681|ENST00000356661|MAGEA1	MULTI-MSMS	A375_MHC_IP_R2	2	510.6462707519531	2	510.777274	1019.53999	-1.0357	-0.00052899	0.24477	0.00012502	-0.79089	-0.00040397	510.77727985034215	19.349	0.60769	19.952	19.633	20.241	0.60308					32	11	4	0	0	0	0.0096822	1	5951	5951		110.55	64.853	1	12821000			46514	9298	33872	34142	45439	45439					0.031005723004682295
SAYGEPRKL	9	Unmodified	_SAYGEPRKL_					0	0	0		ENSG00000198681|ENST00000356661|MAGEA1;MAGEA1|p.E228K|1|0.68|ENSG00000198681|chrX:153183071-153183071|G/A|missense_variant	ENSG00000198681|ENST00000356661|MAGEA1	ENSG00000198681|ENST00000356661|MAGEA1	MULTI-SECPEP	A375_MHC_IP_R2	2	511.1774597167969	2	510.777274	1019.53999	-1.0951	-0.00055934	0.57084	0.00029157	-0.52424	-0.00026777	510.7775519229752	22.41	0.35852	23.029	22.846	23.204	0.61932					14	6	3	0	0	0	0.71071	1	7125	7125		19.362	4.5237	1	1513600			46515	9298	33872	34142	45440	45440					0.031005723004682295
SAYGSVKAY	9	Unmodified	_SAYGSVKAY_					0	0	0		nc|ENSG00000182718|P07355-2|ANXA2;ENSG00000182718|ENST00000451270|ANXA2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF;nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000182718|P07355-2|ANXA2	MULTI-SECPEP	A375_MHC_IP_R1	1	473.6373291015625	2	473.23745	944.460347	-0.60979	-0.00028858	0.28972	0.0001371	-0.32007	-0.00015147	473.2374888459579	28.914	0.45516	28.914	28.694	29.149	0					20	8	4	0	0	0	0.090157	1	8960	8960		67.838	27.881	1	19389000			46516	8430;14909	33873	34143	45441	45441					-0.014104943735219422
SAYGSVKAY	9	Unmodified	_SAYGSVKAY_					0	0	0		nc|ENSG00000182718|P07355-2|ANXA2;ENSG00000182718|ENST00000451270|ANXA2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF;nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000182718|P07355-2|ANXA2	MULTI-SECPEP	A375_MHC_IP_R2	2	473.6369934082031	2	473.23745	944.460347	-0.8669	-0.00041025	0.042681	2.0198E-05	-0.82422	-0.00039005	473.23742236632756	28.226	0.50756	28.904	28.706	29.214	0.67857					22	9	4	0	0	0	0.061442	1	9722	9722		72.968	33.011	1	14288000			46517	8430;14909	33873	34143	45442	45442					-0.014104943735219422
SAYIIRLF	8	Unmodified	_SAYIIRLF_					0	0	0			REV__TENM3|p.S1703F|1|0.39|ENSG00000218336|chr4:182774957-182774957|C/T|missense_variant	REV__TENM3|p.S1703F|1|0.39|ENSG00000218336|chr4:182774957-182774957|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	492.1895446777344	2	491.789653	981.564752	-0.093978	-4.6217E-05	-0.15587	-7.6657E-05	-0.24985	-0.00012287	491.78951937672815	107.23	0.46021	107.23	106.98	107.44	0					15	8	2	0	0	0	0.81376	1	39340	39340		39.957	11.47	1	1927400	+		46518	28094	33874	34144	45443	45443					0.07323252173841865
SAYIIRLF	8	Unmodified	_SAYIIRLF_					0	0	0			REV__TENM3|p.S1703F|1|0.39|ENSG00000218336|chr4:182774957-182774957|C/T|missense_variant	REV__TENM3|p.S1703F|1|0.39|ENSG00000218336|chr4:182774957-182774957|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	492.1892395019531	2	491.789653	981.564752	-0.54856	-0.00026978	-0.36906	-0.0001815	-0.91762	-0.00045128	491.78944420592615	106.17	0.45885	106.93	106.73	107.19	0.75977					13	8	2	0	0	0	0.68328	1	40151	40151		39.957	11.47	1	1675800	+		46519	28094	33874	34144	45444	45444					0.07323252173841865
SAYIIRLF	8	Unmodified	_SAYIIRLF_					0	0	0			REV__TENM3|p.S1703F|1|0.39|ENSG00000218336|chr4:182774957-182774957|C/T|missense_variant	REV__TENM3|p.S1703F|1|0.39|ENSG00000218336|chr4:182774957-182774957|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	491.789653	981.564752	-0.54856	-0.00026978	-0.36906	-0.0001815	-0.91762	-0.00045128	491.78944420592615	106.17	0.45885	106.93	106.73	107.19	0.75977	-0.15052	-8.0657E-05	NaN	39.957	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1675800	+		46520	28094	33874	34144							0.07323252173841865
SAYQRFVD	8	Unmodified	_SAYQRFVD_					0	0	0			REV__GANAB|p.S371F|1|0.43|ENSG00000089597|chr11:62631068-62631068|G/A|missense_variant	REV__GANAB|p.S371F|1|0.43|ENSG00000089597|chr11:62631068-62631068|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	493.7056884765625	2	493.240524	984.466495	-0.33217	-0.00016384	1.4684	0.00072426	1.1362	0.00056042	493.24113654712323	110.96	0.55886	111.7	111.4	111.96	0.73692					17	10	2	0	0	0	0.74098	2	41842	41829;41842		22.736	2.2827	1	1720300	+		46521	16914	33875	34145	45445;45446	45446					-0.026359761420053474
SAYRLPNRI	9	Unmodified	_SAYRLPNRI_					0	0	0			REV__ENSG00000279012|ENST00000624187|OR51B2	REV__ENSG00000279012|ENST00000624187|OR51B2	MULTI-SECPEP	A375_MHC_IP_R1	1	364.6327209472656	3	363.876969	1088.60908	0.2175	7.9143E-05	1.8207	0.00066252	2.0382	0.00074167	364.21262470611805	57.441	0.20396	57.441	57.364	57.568	0					5	3	2	0	0	0	0.775	1	20615	20615		7.1017	0.47135	1	1584800	+		46522	22985	33876	34146	45447	45447					0.06831656320036927
SCAMCSLA	8	Unmodified	_SCAMCSLA_					0	0	0		nc|ENSG00000078725|O60477-3|BRINP1;ENSG00000078725|ENST00000265922|BRINP1	nc|ENSG00000078725|O60477-3|BRINP1	nc|ENSG00000078725|O60477-3|BRINP1	MSMS	A375_MHC_IP_R1	1	393.1237487792969	2	393.15316	784.291767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.19	1	142.19	141.69	142.69	0								0	0	0	0.16876	1	54562	54562		2.5775	0	1				46523	1681	33877	34147	45448	45448					-0.10900758874709027
SCCCCCSYCW	10	Unmodified	_SCCCCCSYCW_					0	0	0		ENST00000326294.3_1_11:67203673-67203718:-|nuORF	ENST00000326294.3_1_11:67203673-67203718:-|nuORF	ENST00000326294.3_1_11:67203673-67203718:-|nuORF	MSMS	A375_MHC_IP_R1	1	580.6524658203125	2	580.643461	1159.27237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.03	1	104.03	103.53	104.53	0								0	0	0	0.15642	1	38199	38199		0	0	1				46524	10730	33878	34148	45449	45449					-0.30089542543782954
SCCCCSLYSC	10	Unmodified	_SCCCCSLYSC_					0	0	0		ENST00000409158.5_1_2:131904864-131905029:+|nuORF	ENST00000409158.5_1_2:131904864-131905029:+|nuORF	ENST00000409158.5_1_2:131904864-131905029:+|nuORF	MSMS	A375_MHC_IP_R1	1	536.1573486328125	2	536.157259	1070.29996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.66	1	130.66	130.16	131.16	0								0	0	0	0.15629	1	50314	50314		0.40072	0.40072	1				46525	11621	33879	34149	45450	45450					-0.2323731601190957
SCCCCSPDPL	10	Unmodified	_SCCCCSPDPL_					0	0	0			REV__ENST00000409158.5_1_2:131904864-131905029:+|nuORF	REV__ENST00000409158.5_1_2:131904864-131905029:+|nuORF	MSMS	A375_MHC_IP_R1	1	514.2185668945312	2	514.171224	1026.32789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.275	1	94.275	93.775	94.775	0								0	0	0	0.1552	1	34652	34652		3.9444	1.3669	1		+		46526	24461	33880	34150	45451	45451					-0.1842166976016415
SCCPCCCC	8	Unmodified	_SCCPCCCC_					0	0	0		ENSG00000183307|ENST00000331437|TMEM121B	ENSG00000183307|ENST00000331437|TMEM121B	ENSG00000183307|ENST00000331437|TMEM121B	MSMS	A375_MHC_IP_R2	2	411.1473693847656	2	411.082508	820.150464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.36	1	131.55	131.05	132.05	0.18953								0	0	0	0.16876	1	51673	51673		0	0	1				46527	8483	33881	34151	45452	45452					-0.26680539835501804
SCCSYGGC	8	Unmodified	_SCCSYGGC_					0	0	0		nc|ENSG00000124006|O75147-1|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF	nc|ENSG00000124006|O75147-1|OBSL1	nc|ENSG00000124006|O75147-1|OBSL1	MSMS	A375_MHC_IP_R2	2	390.3941955566406	2	390.111492	778.208431	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.101	1	14.674	14.174	15.174	0.573								0	0	0	0.16876	1	4284	4284		0	0	1				46528	14575	33882	34152	45453	45453					-0.18954495322543607
SCCYVEDVAI	10	Unmodified	_SCCYVEDVAI_					0	0	0			REV__RECQL|p.H222Y|1|0.14|ENSG00000004700|chr12:21483412-21483412|G/A|missense_variant	REV__RECQL|p.H222Y|1|0.14|ENSG00000004700|chr12:21483412-21483412|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2139892578125	2	551.233193	1100.45183	-0.35351	-0.00019487	-0.38134	-0.00021021	-0.73485	-0.00040507	551.232853172905	39.263	0.50923	39.263	38.882	39.391	0					13	9	2	0	0	0	0.9269	1	13413	13413		3.5965	0	1	2146400	+		46529	27878	33883	34153	45454	45454					-0.09437552396661886
SCDDMDTT	8	Unmodified	_SCDDMDTT_					0	0	0			REV__ENSG00000221886|ENST00000408953|FAM200C	REV__ENSG00000221886|ENST00000408953|FAM200C	MSMS	A375_MHC_IP_R2	2	444.1129455566406	2	444.141501	886.268448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.959	1	90.691	90.191	91.191	0.7318								0	0	0	0.16876	1	34228	34228		0.69038	0	1		+		46530	22694	33884	34154	45455	45455					-0.17923526178333304
SCDSMQEKSR	10	Unmodified	_SCDSMQEKSR_					0	0	0			REV__nc|ENSG00000204428|Q5SRR4-2|LY6G5C	REV__nc|ENSG00000204428|Q5SRR4-2|LY6G5C	MULTI-SECPEP	A375_MHC_IP_R2	2	390.1266174316406	3	390.834112	1169.48051	-0.23302	-9.1071E-05	2.3342	0.00091229	2.1012	0.00082122	390.8348095240885	40.355	0.25336	41.129	40.93	41.183	0.77451					8	4	2	0	0	0	0.94102	1	14899	14899		3.0723	0	1	621540	+		46531	22515	33885	34155	45456	45456					-0.09745434767523875
SCECYECQY	9	Unmodified	_SCECYECQY_					0	0	0			REV__ZFX|p.Y754C|1|0.62|ENSG00000005889|chrX:24211219-24211219|A/G|missense_variant	REV__ZFX|p.Y754C|1|0.62|ENSG00000005889|chrX:24211219-24211219|A/G|missense_variant	MSMS	A375_MHC_IP_R2	2	564.1757202148438	2	564.17756	1126.34057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.177	1	57.927	57.427	58.427	0.75015								0	0	0	0.15486	1	21617	21617		4.756	0	1		+		46532	29022	33886	34156	45457	45457					-0.21754935096259942
SCEDVDECTY	10	Unmodified	_SCEDVDECTY_					0	0	0			REV__nc|ENSG00000184164|Q6UXH1-2|CRELD2	REV__nc|ENSG00000184164|Q6UXH1-2|CRELD2	MSMS	A375_MHC_IP_R1	1	582.1923828125	2	582.197004	1162.37946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.69	1	107.69	107.19	108.19	0								0	0	0	0.1552	1	39512	39512		3.9444	1.6417	1		+		46533	27406	33887	34157	45458	45458					-0.19523931260891914
SCFETSICKV	10	Unmodified	_SCFETSICKV_					0	0	0		ENST00000506111.1_1_4:38777667-38777802:-|nuORF	ENST00000506111.1_1_4:38777667-38777802:-|nuORF	ENST00000506111.1_1_4:38777667-38777802:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	372.6018371582031	3	372.840315	1115.49912	0.19236	7.1719E-05	-0.36453	-0.00013591	-0.17218	-6.4194E-05	372.8401564685013	41.197	0.25367	41.972	41.845	42.098	0.77451					6	4	2	0	0	0	0.94516	1	15308	15308		0.62683	0.21856	1	1967700			46534	12852	33888	34158	45459	45459					-0.05401273125676198
SCFRSDWS	8	Unmodified	_SCFRSDWS_					0	0	0			REV__nc|ENSG00000121988|Q5FWF4-4|ZRANB3	REV__nc|ENSG00000121988|Q5FWF4-4|ZRANB3	MSMS	A375_MHC_IP_R1	1	494.166748046875	2	494.203084	986.391615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.766	1	50.766	50.266	51.266	0								0	0	0	0.16876	1	17998	17998		8.5933	1.8701	1		+		46535	18183	33889	34159	45460	45460					-0.10212481944881802
SCFRSDWS	8	Unmodified	_SCFRSDWS_					0	0	0			REV__nc|ENSG00000121988|Q5FWF4-4|ZRANB3	REV__nc|ENSG00000121988|Q5FWF4-4|ZRANB3	MSMS	A375_MHC_IP_R2	2	494.1849060058594	2	494.203084	986.391615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.26	1	50.017	49.517	50.517	0.75737								0	0	0	0.16876	1	18508	18508		18.135	3.5533	1		+		46536	18183	33889	34159	45461	45461					-0.10212481944881802
SCGCCWCPN	9	Unmodified	_SCGCCWCPN_					0	0	0		ENST00000222584.7_1_7:21470186-21470375:+|nuORF	ENST00000222584.7_1_7:21470186-21470375:+|nuORF	ENST00000222584.7_1_7:21470186-21470375:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	972.8106079101562	1	972.283075	971.275799	-0.044387	-4.3157E-05	-2.2865	-0.0022231	-2.3309	-0.0022663	972.2817587522414	129.47	0.25343	129.47	129.25	129.5	0					5	4	2	0	0	0	0.81779	1	49802	49802		0.52476	0.52476	1	4131900			46537	10113	33890	34160	45462	45462					-0.2109878838326722
SCGGCDSSC	9	Unmodified	_SCGGCDSSC_					0	0	0		ENSG00000254997|ENST00000528743|KRTAP5-9	ENSG00000254997|ENST00000528743|KRTAP5-9	ENSG00000254997|ENST00000528743|KRTAP5-9	MULTI-SECPEP	A375_MHC_IP_R1	1	818.0066528320312	1	818.21135	817.204074	-0.58183	-0.00047606	-0.062396	-5.1053E-05	-0.64423	-0.00052712	818.212609848851	29.203	1.0132	29.203	28.491	29.504	0					25	19	2	0	0	0	0.81896	1	8876	8876		0	0	1	1833900			46538	9884	33891	34161	45463	45463					-0.21184004536121392
SCGGGGGGG	9	Unmodified	_SCGGGGGGG_					0	0	0		tr|U7T603|U7T603_FUSNUSerineproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00149PE=4SV=1	REV__ENSG00000241973|ENST00000255882|PI4KA	REV__ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	A375_MHC_IP_R2	2	608.261474609375	1	608.2093	607.202024	-0.23064	-0.00014028	-2.4248	-0.0014748	-2.6554	-0.0016151	608.2101237898992	112.86	3.2621	113.58	111.48	114.75	0.72458					103	63	2	0	0	0	0.77154	1	42603	42603		0.6015	0	1	2770000	+		46539	22796	33892	34162	45464	45464					-0.11728929167406932
SCGSDYCP	8	Unmodified	_SCGSDYCP_					0	0	0		nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	MULTI-MSMS	A375_MHC_IP_R1	1	832.6399536132812	1	831.264766	830.25749	-0.554	-0.00046052	-1.7068	-0.0014188	-2.2608	-0.0018793	831.2648245939738	5.0387	0.25675	5.0387	4.9002	5.157	0					61	36	2	0	0	0	0.77861	1	1161	1161		0	0	1	120110			46540	14825	33893	34163	45465	45465					-0.16442883761965277
SCGSDYCP	8	Unmodified	_SCGSDYCP_					0	0	0		nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	MULTI-MSMS	A375_MHC_IP_R1	1	832.6400756835938	1	831.264766	830.25749	-0.55397	-0.0004605	-1.433	-0.0011912	-1.9869	-0.0016517	831.2650550200487	8.1385	0.17595	8.1385	8.0843	8.2602	0					34	25	2	0	0	0	0.77861	1	1860	1860		0	0	1	93914			46541	14825	33893	34163	45466	45466					-0.16442883761965277
SCGSDYCP	8	Unmodified	_SCGSDYCP_					0	0	0		nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	MULTI-SECPEP	A375_MHC_IP_R1	1	830.6671752929688	1	831.264766	830.25749	-0.55401	-0.00046053	-1.2671	-0.0010533	-1.8211	-0.0015138	831.2650588952612	4.1965	0.22029	4.1965	4.1032	4.3235	0					44	32	2	0	0	0	0.972	1	969	969		0	0	1	111890			46542	14825	33893	34163	45467	45467					-0.16442883761965277
SCGSDYCP	8	Unmodified	_SCGSDYCP_					0	0	0		nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	MULTI-MSMS	A375_MHC_IP_R2	2	832.6403198242188	1	831.264766	830.25749	-1.031	-0.00085706	-1.6394	-0.0013628	-2.6705	-0.0022199	831.2650010875149	1.5735	0.29089	2.0325	1.9331	2.224	0.45901					39	25	2	0	0	0	0.77861	1	539	539		0	0	1	95219			46543	14825	33893	34163	45468	45468					-0.16442883761965277
SCGSDYCP	8	Unmodified	_SCGSDYCP_					0	0	0		nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	MULTI-MSMS	A375_MHC_IP_R2	2	832.6403198242188	1	831.264766	830.25749	-1.0313	-0.00085731	-1.1142	-0.00092617	-2.1455	-0.0017835	831.2650196974988	3.299	0.1464	3.7348	3.6305	3.7769	0.43585					26	16	2	0	0	0	0.77861	1	1043	1043		0	0	1	119930			46544	14825	33893	34163	45469	45469					-0.16442883761965277
SCGSDYCP	8	Unmodified	_SCGSDYCP_					0	0	0		nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	MULTI-MSMS	A375_MHC_IP_R2	2	832.6398315429688	1	831.264766	830.25749	-1.0309	-0.00085699	-1.0089	-0.00083869	-2.0399	-0.0016957	831.2656178218922	4.8061	0.12577	5.223	5.1462	5.2719	0.41691					21	15	2	0	0	0	0.77861	1	1528	1528		0	0	1	95871			46545	14825	33893	34163	45470	45470					-0.16442883761965277
SCGSDYCP	8	Unmodified	_SCGSDYCP_					0	0	0		nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	MULTI-MSMS	A375_MHC_IP_R2	2	832.640380859375	1	831.264766	830.25749	-1.0311	-0.00085712	-1.0426	-0.00086672	-2.0738	-0.0017238	831.2655232196362	7.328	0.13579	7.7431	7.6586	7.7944	0.4151					32	17	2	0	0	0	0.77861	1	2306	2306		0	0	1	96756			46546	14825	33893	34163	45471	45471					-0.16442883761965277
SCGSDYCP	8	Unmodified	_SCGSDYCP_					0	0	0		nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	MULTI-MSMS	A375_MHC_IP_R2	2	832.4723510742188	1	831.264766	830.25749	-1.0311	-0.00085715	-1.2854	-0.0010685	-2.3166	-0.0019257	831.265007095653	8.1033	0.17341	8.5184	8.443	8.6165	0.4151					38	22	2	0	0	0	0.77861	1	2529	2529		0	0	1	107970			46547	14825	33893	34163	45472	45472					-0.16442883761965277
SCGSDYCP	8	Unmodified	_SCGSDYCP_					0	0	0		nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	MULTI-MSMS	A375_MHC_IP_R2	2	832.64013671875	1	831.264766	830.25749	-1.0311	-0.00085713	-0.89225	-0.0007417	-1.9234	-0.0015988	831.2657343063048	12.893	0.2118	13.437	13.37	13.582	0.54443					34	27	2	0	0	0	0.77861	1	3971	3971		0	0	1	88858			46548	14825	33893	34163	45473	45473					-0.16442883761965277
SCGSDYCP	8	Unmodified	_SCGSDYCP_					0	0	0		nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	MULTI-SECPEP	A375_MHC_IP_R2	2	830.6659545898438	1	831.264766	830.25749	-1.0313	-0.00085729	-1.4132	-0.0011747	-2.4445	-0.002032	831.2648415121862	9.5686	0.30765	10.016	9.9386	10.246	0.44698					56	39	2	0	0	0	0.972	1	2994	2994		0	0	1	125750			46549	14825	33893	34163	45474	45474					-0.16442883761965277
SCGSDYCP	8	Unmodified	_SCGSDYCP_					0	0	0		nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	MULTI-SECPEP	A375_MHC_IP_R2	2	831.9725952148438	1	831.264766	830.25749	-1.0312	-0.00085717	-1.0632	-0.00088378	-2.0943	-0.001741	831.2653539496279	12.13	0.43654	12.675	12.508	12.944	0.54443					81	59	2	0	0	0	0.972	1	3768	3768		0	0	1	147950			46550	14825	33893	34163	45475	45475					-0.16442883761965277
SCGSDYCP	8	Unmodified	_SCGSDYCP_					0	0	0		nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	nc|ENSG00000188659|Q658L1|SAXO2	MULTI-MATCH	A375_MHC_IP_R2	2		1	831.264766	830.25749	-1.031	-0.00085703	-1.3935	-0.0011584	-2.4245	-0.0020154	831.2654716600329	4.6127	0.34185	5.0297	4.8043	5.1462	0.41691	-0.0045388	0.00016982	NaN	0	67	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100580			46551	14825	33893	34163							-0.16442883761965277
SCKDQEDGY	9	Unmodified	_SCKDQEDGY_					0	0	0		ENSG00000128917|ENST00000249749|DLL4	ENSG00000128917|ENST00000249749|DLL4	ENSG00000128917|ENST00000249749|DLL4	MULTI-SECPEP	A375_MHC_IP_R2	2	1044.55615234375	1	1044.39387	1043.38659	0.001659	1.7326E-06	0.29319	0.0003062	0.29485	0.00030794	1044.3938974208327	40.079	0.45634	40.854	40.626	41.082	0.77451					11	8	2	0	0	0	0.79191	1	14892	14892		6.7232	2.3939	1	1973300			46552	4170	33894	34164	45476	45476					-0.13336830598154847
SCKDQEDGY	9	Unmodified	_SCKDQEDGY_					0	0	0		ENSG00000128917|ENST00000249749|DLL4	ENSG00000128917|ENST00000249749|DLL4	ENSG00000128917|ENST00000249749|DLL4	MULTI-MATCH	A375_MHC_IP_R1	1		1	1044.39387	1043.38659	0.24141	0.00025213	-0.67534	-0.00070532	-0.43393	-0.00045319	1044.3937795805662	40.696	0.55695	40.696	40.406	40.963	0	-0.079122	-0.00041671	NaN	6.7232	15	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2469200			46553	4170	33894	34164							-0.13336830598154847
SCKTRPQL	8	Unmodified	_SCKTRPQL_					0	0	0			REV__ENST00000581223.2_17:21911572-21911938:+|nuORF	REV__ENST00000581223.2_17:21911572-21911938:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	466.6637268066406	2	466.752744	931.490935	-0.65435	-0.00030542	0.45747	0.00021352	-0.19688	-9.1894E-05	466.75293530082814	32.131	0.65995	32.868	32.3	32.96	0.73692					16	12	2	0	0	0	0.7338	1	11399	11399		24.674	1.5255	1	1422500	+		46554	26347	33895	34165	45477	45477					0.02244960739869839
SCNHGCGD	8	Unmodified	_SCNHGCGD_					0	0	0			REV__nc|ENSG00000176406|Q9UQ26-4|RIMS2	REV__nc|ENSG00000176406|Q9UQ26-4|RIMS2	MULTI-MSMS	A375_MHC_IP_R2	2	792.323486328125	1	792.239948	791.232672	-0.94724	-0.00075045	-0.99373	-0.00078728	-1.941	-0.0015377	792.2422446930163	124.02	0.25407	124.35	124.24	124.5	0.32969					5	4	2	0	0	0	0.77861	2	47771	47771;47852		0	0	1	7225700	+		46555	21404	33896	34166	45478;45479	45478					-0.17129518844660652
SCNYFVIPE	9	Unmodified	_SCNYFVIPE_					0	0	0			REV__nc|ENSG00000205754|G3V0H7|SLCO1B7	REV__nc|ENSG00000205754|G3V0H7|SLCO1B7	MSMS	A375_MHC_IP_R1	1	357.71514892578125	3	357.832037	1070.47428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.057	1	18.057	17.557	18.557	0								0	0	0	0.15486	1	4278	4278		0.23584	0	1		+		46556	27461	33897	34167	45480	45480					-0.05813584936731786
SCPARARKWS	10	Unmodified	_SCPARARKWS_					0	0	0		nc|ENSG00000125731|Q9BRG2-2|SH2D3A	nc|ENSG00000125731|Q9BRG2-2|SH2D3A	nc|ENSG00000125731|Q9BRG2-2|SH2D3A	MULTI-MSMS	A375_MHC_IP_R1	1	388.26947021484375	3	387.869708	1160.5873	-0.022969	-8.9092E-06	0.66074	0.00025628	0.63777	0.00024737	387.8697034254397	38.297	0.86473	38.297	38.118	38.983	0					40	16	4	0	0	0	0.66308	1	12992	12992		10.315	1.0715	1	16023000			46557	14581	33898	34168	45481	45481					0.013425282998014154
SCPYQCDRH	9	Unmodified	_SCPYQCDRH_					0	0	0		ENSG00000249961|ENST00000433154|TERB1	ENSG00000249961|ENST00000433154|TERB1	ENSG00000249961|ENST00000433154|TERB1	MSMS	A375_MHC_IP_R1	1	554.7050170898438	2	554.718575	1107.4226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.535	1	47.535	47.035	48.035	0								0	0	0	0.15486	1	16728	16728		9.3831	0.78985	1				46558	9844	33899	34169	45482	45482					-0.1268165190228956
SCSGWGLK	8	Unmodified	_SCSGWGLK_					0	0	0			REV__ENST00000590646.5_1_19:2017222-2028791:-|nuORF	REV__ENST00000590646.5_1_19:2017222-2028791:-|nuORF	MSMS	A375_MHC_IP_R2	2	419.171142578125	2	419.199813	836.385073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.329	1	18.932	18.432	19.432	0.60308								0	0	0	0.16876	1	5446	5446		0.69038	0.69038	1		+		46559	26438	33900	34170	45483	45483					-0.03966375105608222
SCSLWGTSF	9	Unmodified	_SCSLWGTSF_					0	0	0		nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	MSMS	A375_MHC_IP_R1	1	494.1519775390625	2	494.21566	986.416767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.38	1	109.38	108.88	109.88	0								0	0	0	0.1535	1	40121	40121		15.847	1.2655	1				46560	14524	33901	34171	45484	45484					-0.07698427142292985
SCSTFIMLL	9	Unmodified	_SCSTFIMLL_					0	0	0			REV__ENST00000360003.7_1_10:121591059-121591560:-|nuORF	REV__ENST00000360003.7_1_10:121591059-121591560:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	507.72698974609375	2	507.753564	1013.49257	-0.046125	-2.342E-05	-0.17894	-9.0858E-05	-0.22507	-0.00011428	507.7535980871679	44.497	0.71452	44.497	44.113	44.827	0					27	13	3	0	0	0	0.62719	1	15590	15590		13.508	1.8676	1	9055800	+		46561	23885	33902	34172	45485	45485					-0.013631662863986094
SCSYLLVP	8	Unmodified	_SCSYLLVP_					0	0	0		ENST00000531357.1_1_11:64888296-64888581:-|nuORF	ENST00000531357.1_1_11:64888296-64888581:-|nuORF	ENST00000531357.1_1_11:64888296-64888581:-|nuORF	MSMS	A375_MHC_IP_R1	1	441.19512939453125	2	441.225497	880.43644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.69	1	147.69	147.19	148.19	0								0	0	0	0.16876	1	56424	56424		2.5775	0	1				46562	13166	33903	34173	45486	45486					-0.00856051131552249
SCSYRIESY	9	Unmodified	_SCSYRIESY_					0	0	0		nc|ENSG00000068912|Q96DZ1-2|ERLEC1;nc|ENSG00000068912|Q96DZ1-3|ERLEC1;ENSG00000068912|ENST00000185150|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	MULTI-SECPEP	A375_MHC_IP_R1	1	554.6210327148438	2	554.242406	1106.47026	-0.83435	-0.00046243	0.58989	0.00032694	-0.24446	-0.00013549	554.2427158500252	41.597	0.9171	41.597	41.266	42.183	0					35	17	3	0	0	0	0.049608	1	14418	14418		75.571	42.785	1	4843100			46563	1469	33904	34174	45487	45487					-0.07871674430452913
SCSYRIESY	9	Unmodified	_SCSYRIESY_					0	0	0		nc|ENSG00000068912|Q96DZ1-2|ERLEC1;nc|ENSG00000068912|Q96DZ1-3|ERLEC1;ENSG00000068912|ENST00000185150|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	MULTI-SECPEP	A375_MHC_IP_R2	2	554.620361328125	2	554.242406	1106.47026	-1.0089	-0.00055916	0.26607	0.00014746	-0.74281	-0.0004117	554.2424948530918	40.979	1.0156	41.754	41.386	42.401	0.77451					33	19	3	0	0	0	0.035151	1	15142	15142		103.82	56.075	1	5125600			46564	1469	33904	34174	45488	45488					-0.07871674430452913
SDCDDNLLDDC	11	Unmodified	_SDCDDNLLDDC_					0	0	0			REV__nc|ENSG00000154556|O94875-11|SORBS2	REV__nc|ENSG00000154556|O94875-11|SORBS2	MSMS	A375_MHC_IP_R1	1	614.0987548828125	2	614.210643	1226.40673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.86	1	137.86	137.36	138.36	0								0	0	0	0.16337	1	53049	53049		1.1933	0.66858	1		+		46565	27299	33905	34175	45489	45489					-0.19741447720502947
SDCETYEFHY	10	Unmodified	_SDCETYEFHY_					0	0	0			REV__ENSG00000164659|ENST00000450689|ELAPOR2	REV__ENSG00000164659|ENST00000450689|ELAPOR2	MSMS	A375_MHC_IP_R1	1	647.2216796875	2	647.240061	1292.46557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.644	1	93.644	93.144	94.144	0								0	0	0	0.1552	1	34422	34422		3.9444	0.66309	1		+		46566	20507	33906	34176	45490	45490					-0.1689660336387533
SDCINCQYPS	10	Unmodified	_SDCINCQYPS_					0	0	0			REV__RREB1|p.Y678S|1|0.11|ENSG00000124782|chr6:7230132-7230132|A/C|missense_variant	REV__RREB1|p.Y678S|1|0.11|ENSG00000124782|chr6:7230132-7230132|A/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	377.5478820800781	3	377.147808	1128.42159	0.12732	4.8018E-05	-0.55071	-0.0002077	-0.42339	-0.00015968	377.1476726864486	27.9	0.50747	28.579	28.401	28.909	0.67857					29	9	4	0	0	0	0.91556	1	9566	9566		1.5923	0	1	18281000	+		46567	27899	33907	34177	45491	45491					-0.13747911061841478
SDDCSEMCDGE	11	Unmodified	_SDDCSEMCDGE_					0	0	0		nc|ENSG00000079263|Q13342-5|SP140;ENSG00000079263|ENST00000392045|SP140;nc|ENSG00000079263|Q13342-3|SP140;nc|ENSG00000079263|Q13342-6|SP140;nc|ENSG00000079263|Q13342-2|SP140	nc|ENSG00000079263|Q13342-5|SP140	nc|ENSG00000079263|Q13342-5|SP140	MSMS	A375_MHC_IP_R2	2	595.6615600585938	2	595.667754	1189.32095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.82	1	107.58	107.08	108.08	0.75977								0	0	0	0.1636	1	40367	40367		0	0	1				46568	1691	33908	34178	45492	45492					-0.2661335589768896
SDDDSSEDSD	10	Unmodified	_SDDDSSEDSD_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MSMS	A375_MHC_IP_R1	1	535.7344970703125	2	536.16527	1070.31599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.1	1	129.1	128.6	129.6	0								0	0	0	0.15642	1	49613	49613		0	0	1		+		46569	16771	33909	34179	45493	45493					-0.21635877172775508
SDDEEESGSY	10	Unmodified	_SDDEEESGSY_					0	0	0			REV__nc|ENSG00000141503|Q8N4C8-5|MINK1	REV__nc|ENSG00000141503|Q8N4C8-5|MINK1	MSMS	A375_MHC_IP_R1	1	559.1691284179688	2	559.19383	1116.37311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.913	1	73.913	73.413	74.413	0								0	0	0	0.1552	1	26921	26921		3.9444	1.8846	1		+		46570	19273	33910	34180	45494	45494					-0.18042409896384015
SDDESSDEQPT	11	Unmodified	_SDDESSDEQPT_					0	0	0		ENSG00000182150|ENST00000653738|ERCC6L2;ENST00000479391.6_3_9:98729892-98767017:+|nuORF	ENSG00000182150|ENST00000653738|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	MSMS	A375_MHC_IP_R1	1	605.1993408203125	2	605.223119	1208.43169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.192	1	55.192	54.692	55.692	0								0	0	0	0.16249	1	19732	19732		5.7319	0	1				46571	8378	33911	34181	45495	45495					-0.1641935332193043
SDDEYKTPLAT	11	Unmodified	_SDDEYKTPLAT_					0	0	0		ENSG00000048707|ENST00000620676|VPS13D;nc|ENSG00000048707|Q5THJ4-2|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	MULTI-SECPEP	A375_MHC_IP_R1	1	619.6806030273438	2	620.290608	1238.56666	-0.3642	-0.00022591	0.91176	0.00056555	0.54755	0.00033964	620.2911849884987	43.578	0.60927	43.578	43.4	44.01	0					17	11	2	0	0	0	0.9836	1	15162	15162		11.495	0	1	3969700			46572	1216	33912	34182	45496	45496					-0.0430782838950563
SDDGPVPIGW	10	Unmodified	_SDDGPVPIGW_					0	0	0			REV__ENSG00000247626|ENST00000282276|MARS2	REV__ENSG00000247626|ENST00000282276|MARS2	MULTI-SECPEP	A375_MHC_IP_R1	1	522.1928100585938	2	521.745639	1041.47673	-0.35137	-0.00018333	-0.26765	-0.00013965	-0.61902	-0.00032297	521.7453153404251	47.845	0.40257	47.845	47.567	47.97	0					11	7	2	0	0	0	0.92051	1	16755	16755		12.532	4.6214	1	1022000	+		46573	22830	33913	34183	45497	45497					-0.04235413207447891
SDDGTVRIW	9	Unmodified	_SDDGTVRIW_					0	0	0		nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26;ENSG00000162923|ENST00000414423|WDR26;ENST00000486652.5_1_1:224577539-224589708:-|nuORF;ENST00000409658.7_1_2:128520603-128520774:-|nuORF;nc|ENSG00000136709|Q9C0J8-3|WDR33;ENSG00000150627|ENST00000508596|WDR17;nc|ENSG00000150627|Q8IZU2|WDR17;ENSG00000136709|ENST00000322313|WDR33	nc|ENSG00000162923|Q9H7D7-2|WDR26;ENSG00000150627|ENST00000508596|WDR17;ENSG00000136709|ENST00000322313|WDR33	nc|ENSG00000162923|Q9H7D7-2|WDR26	MULTI-MSMS	A375_MHC_IP_R1	1	525.1560668945312	2	524.756538	1047.49852	-0.53598	-0.00028126	0.084416	4.4298E-05	-0.45157	-0.00023696	524.7565723863329	64.638	0.76249	64.638	64.343	65.105	0					29	14	3	0	0	0	0.010055	1	23375	23375		125.53	18.589	1	4632700			46574	6613;5852;4807	33914	34184	45498	45498					-0.023326084588461526
SDDPEPLPAH	10	Unmodified	_SDDPEPLPAH_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	A375_MHC_IP_R1	1	539.2081909179688	2	539.246003	1076.47745	-1.0251	-0.0005528	1.0034	0.00054107	-0.021743	-1.1725E-05	539.2464532150715	67.929	1.2695	67.929	67.194	68.463	0					38	24	2	0	0	0	0.70496	1	24652	24652		10.074	0.72649	1	1748300			46575	2516	33915	34185	45499	45499					-0.0577261855839879
SDDPMIEPK	9	Unmodified	_SDDPMIEPK_					0	0	0			REV__RPGRIP1L|p.I1149Ffs*6|1|0.8|ENSG00000103494|chr16:53619196-53619196|T/-|frameshift_variant	REV__RPGRIP1L|p.I1149Ffs*6|1|0.8|ENSG00000103494|chr16:53619196-53619196|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	516.6392211914062	2	516.239332	1030.46411	-0.65645	-0.00033889	0.039829	2.0561E-05	-0.61662	-0.00031833	516.2394013935788	36.223	1.0676	36.223	35.727	36.795	0					34	20	2	0	0	0	0.38603	1	12163	12163		25.399	4.5281	1	3336300	+		46576	17280	33916	34186	45500	45500					-0.0499019266196683
SDDQSLFDSAY	11	Unmodified	_SDDQSLFDSAY_					0	0	0		ENST00000608055.1_1_11:128628003-128638319:+|nuORF;ENSG00000151702|ENST00000527786|FLI1	ENST00000608055.1_1_11:128628003-128638319:+|nuORF	ENST00000608055.1_1_11:128628003-128638319:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	623.5586547851562	2	624.256765	1246.49898	-0.49403	-0.0003084	3.2924	0.0020553	2.7983	0.0017469	624.2588343209285	89.507	0.70961	89.507	88.97	89.679	0					28	13	3	0	0	0	0.99227	1	32799	32799		1.1933	0	1	3815900			46577	5923	33917	34187	45501	45501					-0.11441278320330639
SDDRRMTQY	9	Unmodified	_SDDRRMTQY_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG;SPEG|p.L1960Pfs*45|1|0.05|ENSG00000072195|chr2:219483338-219483339|-/C|frameshift_variant	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MULTI-MSMS	A375_MHC_IP_R2	2	588.1674194335938	2	586.261662	1170.50877	-0.86559	-0.00050746	-0.56736	-0.00033262	-1.4329	-0.00084008	586.259864353933	57.563	0.60972	58.312	58.019	58.629	0.74894					37	11	6	0	0	0	0.5339	1	21835	21835		18.135	1.1927	1	5270500			46578	1532	33918	34188	45502	45502					-0.06966368795929156
SDDRTVRIW	9	Unmodified	_SDDRTVRIW_					0	0	0		ENSG00000144021|ENST00000488633|CIAO1;ENST00000272402.2_1_2:96932116-96934407:+|nuORF	ENSG00000144021|ENST00000488633|CIAO1	ENSG00000144021|ENST00000488633|CIAO1	MULTI-MSMS	A375_MHC_IP_R1	1	383.5999450683594	3	383.2	1146.57817	0.26962	0.00010332	-0.33615	-0.00012881	-0.066535	-2.5496E-05	383.1998788229026	47.304	0.56402	47.304	47.003	47.567	0					25	10	4	0	0	0	0.27064	1	16644	16644		37.075	24.9	1	3008400			46579	5455	33919	34189	45503	45503					0.010744582151346549
SDDRTVRIW	9	Unmodified	_SDDRTVRIW_					0	0	0		ENSG00000144021|ENST00000488633|CIAO1;ENST00000272402.2_1_2:96932116-96934407:+|nuORF	ENSG00000144021|ENST00000488633|CIAO1	ENSG00000144021|ENST00000488633|CIAO1	MULTI-MSMS	A375_MHC_IP_R2	2	383.5999450683594	3	383.2	1146.57817	0.016004	6.1327E-06	-0.07631	-2.9242E-05	-0.060306	-2.3109E-05	383.2000079560195	46.437	0.45832	47.202	46.957	47.416	0.76518					21	8	4	0	0	0	0.27064	1	17378	17378		30.703	21.159	1	2810300			46580	5455	33919	34189	45504	45504					0.010744582151346549
SDDSNDDPA	9	Unmodified	_SDDSNDDPA_					0	0	0			REV__ENSG00000147174|ENST00000373696|GCNA	REV__ENSG00000147174|ENST00000373696|GCNA	MSMS	A375_MHC_IP_R1	1	468.1315612792969	2	468.164876	934.315199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.852	1	59.852	59.352	60.352	0								0	0	0	0.15486	1	21539	21539		4.756	2.1785	1		+		46581	19576	33920	34190	45505	45505					-0.1545862703118246
SDDSNDDPA	9	Unmodified	_SDDSNDDPA_					0	0	0			REV__ENSG00000147174|ENST00000373696|GCNA	REV__ENSG00000147174|ENST00000373696|GCNA	MSMS	A375_MHC_IP_R1	1	468.1713562011719	2	468.164876	934.315199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.942	1	59.942	59.442	60.442	0								0	0	0	0.15486	1	21572	21572		4.756	2.1785	1		+		46582	19576	33920	34190	45506	45506					-0.1545862703118246
SDDTLKQLCA	10	Unmodified	_SDDTLKQLCA_					0	0	0		ENST00000578651.5_1_18:683014-712587:-|nuORF;ENSG00000132199|ENST00000647584|ENOSF1;nc|ENSG00000132199|Q7L5Y1-4|ENOSF1;nc|ENSG00000132199|Q7L5Y1-5|ENOSF1;ENST00000585004.5_1_18:688572-706535:-|nuORF;nc|ENSG00000132199|Q7L5Y1-6|ENOSF1;nc|ENSG00000132199|Q7L5Y1-2|ENOSF1	ENST00000578651.5_1_18:683014-712587:-|nuORF	ENST00000578651.5_1_18:683014-712587:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6632080078125	2	547.263339	1092.51212	-0.3962	-0.00021683	-2.333	-0.0012768	-2.7292	-0.0014936	547.2633327732789	35.397	0.91773	35.397	34.912	35.83	0					31	17	3	0	0	0	0.51493	1	11710	11710		38.176	18.919	1	8569700			46583	4381	33921	34191	45507	45507					-0.030431187419253547
SDDTLKQLCA	10	Unmodified	_SDDTLKQLCA_					0	0	0		ENST00000578651.5_1_18:683014-712587:-|nuORF;ENSG00000132199|ENST00000647584|ENOSF1;nc|ENSG00000132199|Q7L5Y1-4|ENOSF1;nc|ENSG00000132199|Q7L5Y1-5|ENOSF1;ENST00000585004.5_1_18:688572-706535:-|nuORF;nc|ENSG00000132199|Q7L5Y1-6|ENOSF1;nc|ENSG00000132199|Q7L5Y1-2|ENOSF1	ENST00000578651.5_1_18:683014-712587:-|nuORF	ENST00000578651.5_1_18:683014-712587:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	547.6629638671875	2	547.263339	1092.51212	-0.9934	-0.00054365	-4.0782	-0.0022318	-5.0716	-0.0027755	547.2633765891705	34.769	0.91215	35.533	35.068	35.98	0.76338					38	17	3	0	0	0	0.51493	1	12454	12454		38.176	15.439	1	7530700			46584	4381	33921	34191	45508	45508					-0.030431187419253547
SDDVRWPKGGE	11	Unmodified	_SDDVRWPKGGE_					0	0	0			REV__ZNF691|p.R154Efs*41|1|0.23|ENSG00000164011|chr1:42851325-42851325|A/-|frameshift_variant	REV__ZNF691|p.R154Efs*41|1|0.23|ENSG00000164011|chr1:42851325-42851325|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	623.2406616210938	2	623.296559	1244.57856	0.020905	1.303E-05	3.6603	0.0022815	3.6812	0.0022945	623.298127585522	45.064	0.40665	45.064	44.827	45.234	0					13	7	3	0	0	0	0.65093	1	15716	15716		19.362	0.10495	1	2298400	+		46585	20437	33922	34192	45509	45509					-0.03394166855673575
SDEEWSPAWTN	11	Unmodified	_SDEEWSPAWTN_					0	0	0			REV__ENST00000526084.1_1_11:7690232-7690520:-|nuORF	REV__ENST00000526084.1_1_11:7690232-7690520:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	441.58245849609375	3	441.182563	1320.52586	-0.0048986	-2.1612E-06	-0.0156	-6.8825E-06	-0.020499	-9.0437E-06	441.18248511845	45.974	0.55776	45.974	45.738	46.295	0					23	10	3	0	0	0	0.73502	1	16135	16135		4.1166	0	1	3738700	+		46586	25768	33923	34193	45510	45510					-0.12158169709141475
SDEFRRNCTQR	11	Unmodified	_SDEFRRNCTQR_					0	0	0		ENSG00000233757|ENST00000425953|ZNF892	ENSG00000233757|ENST00000425953|ZNF892	ENSG00000233757|ENST00000425953|ZNF892	MULTI-SECPEP	A375_MHC_IP_R2	2	706.72998046875	2	706.328399	1410.64224	-0.74098	-0.00052338	1.3865	0.00097931	0.6455	0.00045594	706.3298686746227	98.186	0.50988	98.946	98.691	99.201	0.75977					20	9	3	0	0	0	0.86796	1	37259	37259		26.268	14.773	1	2393700			46587	9737	33924	34194	45511	45511					-0.04665129690215508
SDEFVDSFKK	10	Unmodified	_SDEFVDSFKK_					0	0	0		ENSG00000002330|ENST00000309032|BAD	ENSG00000002330|ENST00000309032|BAD	ENSG00000002330|ENST00000309032|BAD	MULTI-SECPEP	A375_MHC_IP_R1	1	401.2956848144531	3	401.196033	1200.56627	-0.17407	-6.9836E-05	0.91793	0.00036827	0.74386	0.00029843	401.1964668226737	49.962	0.51198	49.962	49.692	50.204	0					17	9	2	0	0	0	0.88918	1	17682	17682		5.0475	0.3316	1	2668200			46588	853	33925	34195	45512	45512					-0.02599203318709442
SDEFYAYY	8	Unmodified	_SDEFYAYY_					0	0	0			REV__nc|ENSG00000151090|P10828-2|THRB	REV__nc|ENSG00000151090|P10828-2|THRB	MULTI-MSMS	A375_MHC_IP_R2	2	529.1806030273438	2	529.211098	1056.40764	-0.50347	-0.00026644	1.2083	0.00063946	0.70486	0.00037302	529.212040025332	88.259	0.55687	88.991	88.671	89.228	0.7318					22	10	3	0	0	0	0.77123	1	33555	33555		14.582	0	1	3083500	+		46589	27285	33926	34196	45513	45513					-0.1183049722699252
SDEIELHMPKE	11	Unmodified	_SDEIELHMPKE_					0	0	0			REV__ENSG00000155115|ENST00000329970|GTF3C6	REV__ENSG00000155115|ENST00000329970|GTF3C6	MULTI-MSMS	A375_MHC_IP_R1	1	443.610595703125	3	443.211465	1326.61257	-0.53006	-0.00023493	-1.9994	-0.00088616	-2.5295	-0.0011211	443.21032253771057	29.428	0.25184	29.428	29.252	29.504	0					8	4	2	0	0	0	0.72801	1	9234	9234		5.8681	1.7515	1	8038100	+		46590	19915	33927	34197	45514	45514					-0.03767506478948235
SDEMISKIN	9	Unmodified	_SDEMISKIN_					0	0	0			REV__BIRC2|p.M237Nfs*24|1|0.2|ENSG00000110330|chr11:102350562-102350563|-/A|frameshift_variant	REV__BIRC2|p.M237Nfs*24|1|0.2|ENSG00000110330|chr11:102350562-102350563|-/A|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	518.14306640625	2	518.752607	1035.49066	-0.62444	-0.00032393	-0.56407	-0.00029262	-1.1885	-0.00061654	518.7524279589778	42.667	0.9119	43.44	43.065	43.977	0.7724					27	15	3	0	0	0	0.49205	1	15912	15912		21.537	0	1	6810900	+		46591	15511	33928	34198	45515	45515					-0.025665037706403382
SDESVPRNSC	10	Unmodified	_SDESVPRNSC_					0	0	0			REV__HECW2|p.G370R|1|0.29|ENSG00000138411|chr2:196319782-196319782|C/T|missense_variant	REV__HECW2|p.G370R|1|0.29|ENSG00000138411|chr2:196319782-196319782|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6632080078125	2	547.23257	1092.45059	-0.40165	-0.00021979	0.52851	0.00028922	0.12686	6.9422E-05	547.2329346466591	35.294	0.30501	35.294	35.116	35.421	0					9	5	2	0	0	0	0.85226	1	11710	11710		14.838	5.4908	1	1430300	+		46592	26727	33929	34199	45516	45516					-0.0919405044121504
SDEYLRSY	8	Unmodified	_SDEYLRSY_					0	0	0		ENSG00000169860|ENST00000305097|P2RY1	ENSG00000169860|ENST00000305097|P2RY1	ENSG00000169860|ENST00000305097|P2RY1	MULTI-MSMS	A375_MHC_IP_R2	2	517.710693359375	2	516.735271	1031.45599	-1.2096	-0.00062503	0.1222	6.3147E-05	-1.0874	-0.00056189	516.7352376249453	28.4	0.45474	29.079	28.909	29.364	0.67857					20	8	4	0	0	0	0.77515	1	9837	9837		12.532	0	1	11036000			46593	7444	33930	34200	45517	45517					-0.05848003587107087
SDFFKSHSY	9	Unmodified	_SDFFKSHSY_					0	0	0		ENSG00000148950|ENST00000532287|IMMP1L;ENST00000528161.5_1_11:31474627-31531097:-|nuORF;ENST00000532624.5_1_11:31474627-31484823:-|nuORF;ENST00000527184.5_1_11:31470587-31484823:-|nuORF	ENSG00000148950|ENST00000532287|IMMP1L	ENSG00000148950|ENST00000532287|IMMP1L	MULTI-SECPEP	A375_MHC_IP_R2	2	558.6097412109375	2	559.251089	1116.48762	-1.0853	-0.00060695	2.9494	0.0016495	1.8641	0.0010425	559.2532657469849	26.373	0.30411	27.033	26.805	27.109	0.65992					8	5	2	0	0	0	0.73363	1	8897	8897		6.7232	2.3939	1	1739500			46594	5775	33931	34201	45518	45518					-0.06596010833118271
SDFHERDTFY	10	Unmodified	_SDFHERDTFY_					0	0	0		ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	MULTI-MSMS	A375_MHC_IP_R2	2	659.1796264648438	2	658.780741	1315.54693	-0.96441	-0.00063534	-0.68084	-0.00044853	-1.6453	-0.0010839	658.7803523799894	32.568	0.66076	33.304	33.01	33.671	0.73692					31	12	3	0	0	0	0.70496	1	11631	11631		10.074	1.3285	1	6290700			46595	3948	33932	34202	45519	45519					-0.0982215960962094
SDFLPQCELV	10	Unmodified	_SDFLPQCELV_					0	0	0			REV__ENSG00000166183|ENST00000551177|ASPG	REV__ENSG00000166183|ENST00000551177|ASPG	MULTI-SECPEP	A375_MHC_IP_R1	1	575.2027587890625	2	575.776082	1149.53761	-0.1478	-8.5101E-05	-0.01894	-1.0905E-05	-0.16674	-9.6006E-05	575.7760170516445	100.8	0.75888	100.8	100.43	101.19	0					30	14	3	0	0	0	0.90513	1	37116	37116		12.241	12.241	1	2218800	+		46596	20658	33933	34203	45520	45520					-0.03117644219491922
SDFLPQCELV	10	Unmodified	_SDFLPQCELV_					0	0	0			REV__ENSG00000166183|ENST00000551177|ASPG	REV__ENSG00000166183|ENST00000551177|ASPG	MULTI-SECPEP	A375_MHC_IP_R2	2	575.2025756835938	2	575.776082	1149.53761	0.058111	3.3459E-05	-0.47339	-0.00027257	-0.41528	-0.00023911	575.7759490975446	99.868	0.76129	100.63	100.37	101.13	0.76278					29	14	3	0	0	0	0.90513	1	37961	37961		12.241	12.241	1	2919000	+		46597	20658	33933	34203	45521	45521					-0.03117644219491922
SDFNTIVRT	9	Unmodified	_SDFNTIVRT_					0	0	0			REV__TGM5|p.K709Rfs*8|1|0.46|ENSG00000104055|chr15:43233228-43233228|T/-|frameshift_variant	REV__TGM5|p.K709Rfs*8|1|0.46|ENSG00000104055|chr15:43233228-43233228|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	526.2185668945312	2	526.772188	1051.52982	-0.26953	-0.00014198	0.19857	0.0001046	-0.070964	-3.7382E-05	526.7722349448952	45.626	0.40435	45.626	45.384	45.789	0					12	7	2	0	0	0	0.69507	1	15885	15885		19.257	0	1	3027100	+		46598	17299	33934	34204	45522	45522					0.006119645752505676
SDFRFSEVHGA	11	Unmodified	_SDFRFSEVHGA_					0	0	0		ENSG00000139679|ENST00000620633|LPAR6	ENSG00000139679|ENST00000620633|LPAR6	ENSG00000139679|ENST00000620633|LPAR6	MULTI-MSMS	A375_MHC_IP_R2	2	627.1898193359375	2	626.291276	1250.568	-0.74343	-0.0004656	0.17541	0.00010986	-0.56802	-0.00035575	626.7902354115906	70.074	3.0445	70.808	68.458	71.503	0.73421					93	59	3	0	0	0	0.66366	1	26588	26588		18.373	0.22675	1	6781800			46599	5100	33935	34205	45523	45523					-0.04726149510088362
SDGAFGGC	8	Unmodified	_SDGAFGGC_					0	0	0		nc|ENSG00000134769|Q9Y4J8-9|DTNA;nc|ENSG00000134769|Q9Y4J8-7|DTNA	nc|ENSG00000134769|Q9Y4J8-9|DTNA	nc|ENSG00000134769|Q9Y4J8-9|DTNA	MSMS	A375_MHC_IP_R2	2	357.18878173828125	2	357.131596	712.248639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.404	1	18	17.5	18.5	0.59616								0	0	0	0.16876	1	5115	5115		0	0	1				46600	14611	33936	34206	45524	45524					-0.11899489336110491
SDGDHSYPSL	10	Unmodified	_SDGDHSYPSL_					0	0	0			REV__nc|ENSG00000110697|O00562-2|PITPNM1	REV__nc|ENSG00000110697|O00562-2|PITPNM1	MSMS	A375_MHC_IP_R1	1	539.2083740234375	2	539.22781	1076.44107	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.244	1	82.244	81.744	82.744	0								0	0	0	0.15158	1	30074	30074		14.838	2.3067	1		+		46601	17636	33937	34207	45525	45525					-0.0940949545508829
SDGDRQVWF	9	Unmodified	_SDGDRQVWF_					0	0	0		ENSG00000145198|ENST00000691901|VWA5B2;ENST00000461141.5_1_3:183952309-183959823:+|nuORF	ENSG00000145198|ENST00000691901|VWA5B2	ENSG00000145198|ENST00000691901|VWA5B2	MULTI-SECPEP	A375_MHC_IP_R1	1	554.6749877929688	2	555.254163	1108.49377	-0.5509	-0.00030589	-0.13942	-7.7413E-05	-0.69032	-0.0003833	555.2540334212816	61.648	0.66393	61.648	61.382	62.046	0					28	12	3	0	0	0	0.69504	1	22268	22268		12.532	5.8084	1	6402000			46602	5540	33938	34208	45526	45526					-0.056134926016284226
SDGFVYGV	8	Unmodified	_SDGFVYGV_					0	0	0			REV__ENSG00000116171|ENST00000371514|SCP2	REV__ENSG00000116171|ENST00000371514|SCP2	MULTI-MSMS	A375_MHC_IP_R2	2	422.59857177734375	2	422.197793	842.381034	0.090607	3.8254E-05	0.96602	0.00040785	1.0566	0.00044611	422.198691587886	99.38	1.2719	100.14	99.808	101.08	0.75977					44	24	3	0	0	0	0.72761	1	37680	37680		26.341	0	1	10641000	+		46603	17944	33939	34209	45527	45527					-0.046461413276574604
SDGHLIYY	8	Unmodified	_SDGHLIYY_					0	0	0		nc|ENSG00000115762|Q96CS7-4|PLEKHB2;nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	MULTI-SECPEP	A375_MHC_IP_R1	1	484.7003479003906	2	484.229625	966.444697	-0.2092	-0.0001013	0.19574	9.4781E-05	-0.013468	-6.5218E-06	484.2296750371798	54.525	0.5081	54.525	54.314	54.822	0					12	9	2	0	0	0	0.95423	1	19565	19565		12.532	0	1	2064200			46604	3339	33940	34210	45528	45528					-0.03986780890568298
SDGHLIYY	8	Unmodified	_SDGHLIYY_					0	0	0		nc|ENSG00000115762|Q96CS7-4|PLEKHB2;nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	MULTI-MSMS	A375_MHC_IP_R2	2	484.6292419433594	2	484.229625	966.444697	-1.0365	-0.00050189	-0.012043	-5.8316E-06	-1.0485	-0.00050772	484.22966050450094	53.78	0.4111	54.531	54.301	54.712	0.75105					13	7	2	0	0	0	0.75805	1	20361	20361		18.135	0	1	2177800			46605	3339	33940	34210	45529	45529					-0.03986780890568298
SDGIYRTL	8	Unmodified	_SDGIYRTL_					0	0	0			REV__ENST00000392225.7_1_19:35616099-35617731:-|nuORF	REV__ENST00000392225.7_1_19:35616099-35617731:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	463.19708251953125	2	462.742899	923.471246	-0.9627	-0.00044548	-0.012547	-5.8062E-06	-0.97525	-0.00045129	462.74294247612244	25.22	0.45866	25.864	25.719	26.178	0.64368					10	8	2	0	0	0	0.73946	1	8424	8424		23.148	2.6948	1	2800600	+		46606	19854	33941	34211	45530	45530					0.006449080007655539
SDGLAHLDNLK	11	Unmodified	_SDGLAHLDNLK_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	A375_MHC_IP_R2	2	394.9221496582031	3	394.875293	1181.60405	-0.18545	-7.3228E-05	-0.24842	-9.8097E-05	-0.43387	-0.00017132	395.2092721235262	39.702	0.50743	40.476	40.169	40.676	0.77451					15	9	2	0	0	0	0.71728	1	14674	14674		14.21	5.766	1	1777900			46607	9826	33942	34212	45531	45531					0.020513076667384667
SDGLCCWCCSC	11	Unmodified	_SDGLCCWCCSC_					0	0	0			REV__ENST00000566894.1_1_15:75194962-75197073:-|nuORF	REV__ENST00000566894.1_1_15:75194962-75197073:-|nuORF	MSMS	A375_MHC_IP_R2	2	590.1607055664062	2	590.17344	1178.33233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.95	1	101.71	101.21	102.21	0.76388								0	0	0	0.16307	1	38269	38269		2.7352	0.43246	1		+		46608	21517	33943	34213	45532	45532					-0.2497052860887834
SDGMYQCGPAS	11	Unmodified	_SDGMYQCGPAS_					0	0	0		F13A1|p.R409Q|1|0.27|ENSG00000124491|chr6:6195876-6195876|C/T|missense_variant	F13A1|p.R409Q|1|0.27|ENSG00000124491|chr6:6195876-6195876|C/T|missense_variant	F13A1|p.R409Q|1|0.27|ENSG00000124491|chr6:6195876-6195876|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	372.8758239746094	3	372.475925	1114.40594	0.071362	2.658E-05	-0.075835	-2.8247E-05	-0.0044738	-1.6664E-06	372.47590115049206	26.825	0.55278	26.825	26.626	27.179	0					22	10	3	0	0	0	0.73822	1	8063	8063		0.36667	0.097654	1	6374200			46609	13966	33944	34214	45533	45533					-0.14668197578885156
SDGNLEKESAT	11	Unmodified	_SDGNLEKESAT_					0	0	0			REV__ENSG00000163811|ENST00000407426|WDR43	REV__ENSG00000163811|ENST00000407426|WDR43	MULTI-MSMS	A375_MHC_IP_R2	2	576.2139282226562	2	575.764757	1149.51496	-0.084256	-4.8512E-05	-0.73428	-0.00042277	-0.81854	-0.00047129	575.7642935432553	48.021	0.60402	48.783	48.48	49.084	0.76128					25	11	3	0	0	0	0.56199	1	18017	18017		26.268	3.6101	1	5132900	+		46610	20414	33945	34215	45534	45534					-0.053815720834109015
SDGNLEKESAT	11	Unmodified	_SDGNLEKESAT_					0	0	0			REV__ENSG00000163811|ENST00000407426|WDR43	REV__ENSG00000163811|ENST00000407426|WDR43	MULTI-SECPEP	A375_MHC_IP_R2	2	576.1644287109375	2	575.764757	1149.51496	-0.084256	-4.8512E-05	-0.73428	-0.00042277	-0.81854	-0.00047129	575.7642935432553	48.021	0.60402	48.783	48.48	49.084	0.76128					25	11	3	0	0	0	0.90673	1	17986	17986		18.373	4.467	1	5132900	+		46611	20414	33945	34215	45535	45535					-0.053815720834109015
SDGNLEKESAT	11	Unmodified	_SDGNLEKESAT_					0	0	0			REV__ENSG00000163811|ENST00000407426|WDR43	REV__ENSG00000163811|ENST00000407426|WDR43	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	575.764757	1149.51496	0.23742	0.0001367	-0.58991	-0.00033965	-0.35248	-0.00020295	575.7643433492135	48.609	0.60746	48.609	48.375	48.983	0	-0.086586	0.00012102	NaN	26.268	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6831600	+		46612	20414	33945	34215							-0.053815720834109015
SDGNSERR	8	Unmodified	_SDGNSERR_					0	0	0			REV__ENST00000556758.1_1_14:100317215-100349650:+|nuORF	REV__ENST00000556758.1_1_14:100317215-100349650:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	460.64752197265625	2	460.712662	919.410771	-0.10941	-5.0406E-05	-2.6309	-0.0012121	-2.7403	-0.0012625	460.71143046355905	56.36	0.30428	56.36	56.143	56.447	0					7	5	2	0	0	0	0.77675	1	20160	20160		6.7232	2.3939	1	445760	+		46613	16520	33946	34216	45536	45536					-0.05215809329604326
SDGPSSPKDDV	11	Unmodified	_SDGPSSPKDDV_					0	0	0			REV__ENSG00000141570|ENST00000269385|CBX8	REV__ENSG00000141570|ENST00000269385|CBX8	MULTI-MSMS	A375_MHC_IP_R1	1	551.7239379882812	2	552.2462	1102.47785	-0.62077	-0.00034282	-0.6456	-0.00035653	-1.2664	-0.00069935	552.2456421299794	28.25	0.75804	28.25	27.987	28.745	0					27	14	3	0	0	0	0.73238	1	8768	8768		6.6304	0.89852	1	8493400	+		46614	19280	33947	34217	45537	45537					-0.06929243629178927
SDGQCADMGW	10	Unmodified	_SDGQCADMGW_					0	0	0			REV__ENSG00000187950|ENST00000537054|OVCH1	REV__ENSG00000187950|ENST00000537054|OVCH1	MSMS	A375_MHC_IP_R2	2	535.1897583007812	2	535.189316	1068.36408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.599	1	41.374	40.874	41.874	0.77451								0	0	0	0.15549	1	15037	15037		2.9952	0.41776	1		+		46615	22059	33948	34218	45538	45538					-0.1673675326742341
SDGSFIGY	8	Unmodified	_SDGSFIGY_					0	0	0		nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000537834.5_1_19:40745726-40771198:-|nuORF	nc|ENSG00000105221|P31751-2|AKT2	nc|ENSG00000105221|P31751-2|AKT2	MULTI-MSMS	A375_MHC_IP_R2	2	845.51318359375	1	845.367575	844.360298	-0.73396	-0.00062047	0.10187	8.6116E-05	-0.63209	-0.00053435	845.3677621355394	72.855	0.55978	73.59	73.379	73.938	0.73541					16	10	2	0	0	0	0.28913	1	27593	27593		59.795	25.608	1	1855700			46616	2577	33949	34219	45539	45539					-0.06810731707321338
SDGSFIGY	8	Unmodified	_SDGSFIGY_					0	0	0		nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000537834.5_1_19:40745726-40771198:-|nuORF	nc|ENSG00000105221|P31751-2|AKT2	nc|ENSG00000105221|P31751-2|AKT2	MULTI-MATCH	A375_MHC_IP_R1	1		1	845.367575	844.360298	-0.3403	-0.00028768	0.15441	0.00013054	-0.18589	-0.00015714	845.3674203082085	73.58	0.55743	73.58	73.285	73.843	0	-0.0050717	2.3279E-05	NaN	59.795	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1695000			46617	2577	33949	34219							-0.06810731707321338
SDGSRCVNYY	10	Unmodified	_SDGSRCVNYY_					0	0	0			REV__nc|ENSG00000196557|O95180-2|CACNA1H	REV__nc|ENSG00000196557|O95180-2|CACNA1H	MULTI-SECPEP	A375_MHC_IP_R1	1	582.6936645507812	2	582.242938	1162.47132	0.28371	0.00016519	-0.81017	-0.00047172	-0.52646	-0.00030653	582.2425575829536	69.554	0.45577	69.554	69.377	69.832	0					12	8	2	0	0	0	0.93799	1	25345	25345		3.5965	0.60125	1	2125000	+		46618	27437	33950	34220	45540	45540					-0.10341460061545149
SDGSRKKMP	9	Unmodified	_SDGSRKKMP_					0	0	0		ENST00000377603.4_1_20:18464445-18464547:+|nuORF	ENST00000377603.4_1_20:18464445-18464547:+|nuORF	ENST00000377603.4_1_20:18464445-18464547:+|nuORF	MSMS	A375_MHC_IP_R1	1	503.22015380859375	2	503.260933	1004.50731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.82	1	147.82	147.32	148.32	0								0	0	0	0.15486	1	56465	56465		1.6526	0.96225	1				46619	11297	33951	34221	45541	45541					0.005240419059759915
SDHQILYES	9	Unmodified	_SDHQILYES_					0	0	0			REV__ENST00000529357.5_1_17:43475293-43487738:-|nuORF	REV__ENST00000529357.5_1_17:43475293-43487738:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	545.681884765625	2	546.253828	1090.4931	-1.131	-0.00061784	3.9803	0.0021742	2.8492	0.0015564	546.2560420968873	52.105	0.50908	52.857	52.473	52.983	0.75225					12	9	2	0	0	0	0.63622	1	19652	19652		24.991	3.2443	1	1184300	+		46620	20113	33952	34222	45542	45542					-0.048523320413323745
SDIDYHPMCLI	11	Unmodified	_SDIDYHPMCLI_					0	0	0			REV__ENST00000560605.1_1_15:91524929-91537723:-|nuORF	REV__ENST00000560605.1_1_15:91524929-91537723:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	436.59820556640625	3	436.198391	1305.57334	-0.63748	-0.00027807	0.31687	0.00013822	-0.32061	-0.00013985	436.1985285660698	33.319	0.70975	34.071	33.84	34.55	0.75225					41	13	4	0	0	0	0.72469	1	11927	11927		22.775	0	1	26786000	+		46621	15716	33953	34223	45543	45543					-0.06721930034132129
SDIFRRRY	8	Unmodified	_SDIFRRRY_					0	0	0		ENSG00000162621|ENST00000294635|LRRC53	ENSG00000162621|ENST00000294635|LRRC53	ENSG00000162621|ENST00000294635|LRRC53	MULTI-SECPEP	A375_MHC_IP_R2	2	370.92431640625	3	371.536835	1111.58868	0.090943	3.3789E-05	-0.00064845	-2.4092E-07	0.090295	3.3548E-05	371.5368547552406	23.318	0.76086	23.948	23.368	24.129	0.63014					18	14	2	0	0	0	0.972	1	7272	7272		0.40072	0.40072	1	1722500			46622	6565	33954	34224	45544	45544					0.03734485660243081
SDITLQHPPPS	11	Unmodified	_SDITLQHPPPS_					0	0	0		ENSG00000061656|ENST00000374273|SPAG4	ENSG00000061656|ENST00000374273|SPAG4	ENSG00000061656|ENST00000374273|SPAG4	MULTI-SECPEP	A375_MHC_IP_R2	2	596.7030029296875	2	596.303852	1190.59315	-0.64314	-0.0003835	0.98488	0.00058729	0.34175	0.00020379	596.3044317739254	44.595	0.71445	45.364	45.035	45.75	0.76909					29	13	4	0	0	0	0.92392	1	16612	16612		17.443	5.9479	1	9158400			46623	1320	33955	34225	45545	45545					0.005479052925011274
SDITSSNMQI	10	Unmodified	_SDITSSNMQI_					0	0	0		ENSG00000122376|ENST00000298786|SHLD2;nc|ENSG00000122376|Q86V20|SHLD2	ENSG00000122376|ENST00000298786|SHLD2	ENSG00000122376|ENST00000298786|SHLD2	MULTI-MSMS	A375_MHC_IP_R2	2	548.1953125	2	548.252971	1094.49139	-0.84251	-0.00046191	-0.1399	-7.6702E-05	-0.98242	-0.00053861	548.2532872776543	74.751	0.66224	75.488	75.009	75.671	0.73751					21	12	2	0	0	0	0.69306	1	28206	28206		13.906	0.39817	1	1714100			46624	3776	33956	34226	45546	45546					-0.05207709121600601
SDKIAEVYV	9	Unmodified	_SDKIAEVYV_					0	0	0			REV__CON__P15497	REV__CON__P15497	MULTI-SECPEP	A375_MHC_IP_R1	1	511.6866455078125	2	512.27149	1022.52843	-0.8891	-0.00045546	0.44202	0.00022644	-0.44707	-0.00022902	512.2717587765285	68.032	0.45513	68.032	67.804	68.26	0					18	8	3	0	0	0	0.63327	1	24589	24589		18.146	11.423	1	1766000	+	+	46625	15860	33957	34227	45547	45547					0.018063304864767815
SDKKVVAVAYY	11	Unmodified	_SDKKVVAVAYY_					0	0	0			REV__ENST00000493011.5_1_3:133465284-133474340:+|nuORF	REV__ENST00000493011.5_1_3:133465284-133474340:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	414.26812744140625	3	414.895806	1241.66559	-0.17298	-7.1767E-05	-0.91169	-0.00037826	-1.0847	-0.00045002	414.89486018517624	28.053	0.25366	28.731	28.655	28.909	0.67857					6	4	2	0	0	0	0.9889	1	9633	9633		6.6235	5.1683	1	823890	+		46626	16951	33958	34228	45548	45548					0.05442239366061585
SDKLAAFILSI	11	Unmodified	_SDKLAAFILSI_					0	0	0			REV__nc|ENSG00000155506|Q6PKG0-3|LARP1	REV__nc|ENSG00000155506|Q6PKG0-3|LARP1	MULTI-MSMS	A375_MHC_IP_R1	1	393.63446044921875	3	393.232418	1176.67542	-0.14968	-5.886E-05	1.7367	0.00068291	1.587	0.00062405	393.2338878213284	130.95	0.35654	130.95	130.82	131.18	0					11	6	2	0	0	0	0.7362	1	50537	50537		1.2148	0.14337	1	8465100	+		46627	19924	33959	34229	45549	45549					0.09415427371436635
SDKLAAFILSI	11	Unmodified	_SDKLAAFILSI_					0	0	0			REV__nc|ENSG00000155506|Q6PKG0-3|LARP1	REV__nc|ENSG00000155506|Q6PKG0-3|LARP1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	393.232418	1176.67542	-0.14968	-5.886E-05	1.7367	0.00068291	1.587	0.00062405	393.2338878213284	130.95	0.35654	130.95	130.82	131.18	0	0	0	NaN	1.2148	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8465100	+		46628	19924	33959	34229							0.09415427371436635
SDKYGLGY	8	Unmodified	_SDKYGLGY_					0	0	0		ENSG00000166851|ENST00000300093|PLK1;ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENST00000564794.1_1_16:23700038-23701081:+|nuORF	ENSG00000166851|ENST00000300093|PLK1	ENSG00000166851|ENST00000300093|PLK1	MULTI-MSMS	A375_MHC_IP_R1	1	452.1162109375	2	451.71635	901.418148	-0.10315	-4.6596E-05	-0.27046	-0.00012217	-0.37361	-0.00016877	451.71630324625335	40.414	0.81298	40.414	40.05	40.863	0					42	15	4	0	0	0	0.047217	1	13833	13833		123.45	59.214	1	25907000			46629	7119	33960	34230	45550	45550					-0.03650469781894117
SDLASYLHD	9	Unmodified	_SDLASYLHD_					0	0	0			REV__ENST00000302392.4_1_3:44906723-44906972:+|nuORF	REV__ENST00000302392.4_1_3:44906723-44906972:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	510.67529296875	2	510.735271	1019.45599	-1.1105	-0.00056717	-0.52666	-0.00026899	-1.6372	-0.00083616	510.73508007040715	57.329	1.0185	58.078	57.661	58.679	0.74894					43	19	4	0	0	0	0.64808	1	21784	21784		11.64	3.047	1	4682200	+		46630	23435	33961	34231	45551	45551					-0.05296003587102405
SDLASYLHD	9	Unmodified	_SDLASYLHD_					0	0	0			REV__ENST00000302392.4_1_3:44906723-44906972:+|nuORF	REV__ENST00000302392.4_1_3:44906723-44906972:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	510.735271	1019.45599	-0.48723	-0.00024885	-0.65044	-0.0003322	-1.1377	-0.00058105	510.73500341482617	58.051	1.1178	58.051	57.618	58.736	0	-0.013492	-6.7451E-05	NaN	11.64	52	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3820200	+		46631	23435	33961	34231							-0.05296003587102405
SDLASYLHD	9	Unmodified	_SDLASYLHD_					0	0	0			REV__ENST00000302392.4_1_3:44906723-44906972:+|nuORF	REV__ENST00000302392.4_1_3:44906723-44906972:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	510.735271	1019.45599	-1.1105	-0.00056717	-0.52666	-0.00026899	-1.6372	-0.00083616	510.73508007040715	57.329	1.0185	58.078	57.661	58.679	0.74894	0.013492	5.8986E-05	NaN	11.64	43	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4682200	+		46632	23435	33961	34231							-0.05296003587102405
SDLDTLHIW	9	Unmodified	_SDLDTLHIW_					0	0	0		PLXND1|p.P1756L|1|0.07|ENSG00000004399|chr3:129559650-129559650|G/A|missense_variant	PLXND1|p.P1756L|1|0.07|ENSG00000004399|chr3:129559650-129559650|G/A|missense_variant	PLXND1|p.P1756L|1|0.07|ENSG00000004399|chr3:129559650-129559650|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	551.658935546875	2	550.274564	1098.53457	-0.49091	-0.00027013	-4.2166	-0.0023203	-4.7075	-0.0025904	550.2722429844894	79.345	1.4301	79.345	78.859	80.289	0					117	27	6	0	0	0	0.6898	1	28840	28840		7.9102	0.62092	1	53848000			46633	15202	33962	34232	45552	45552					-0.010751512819979325
SDLGGAGGGEP	11	Unmodified	_SDLGGAGGGEP_					0	0	0			REV__ENST00000593595.1_1_19:50321571-50321933:+|nuORF	REV__ENST00000593595.1_1_19:50321571-50321933:+|nuORF	MSMS	A375_MHC_IP_R2	2	458.6788635253906	2	458.703971	915.393389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.34	1	63.083	62.583	63.583	0.74263								0	0	0	0.16138	1	23630	23630		11.495	2.1116	1		+		46634	26459	33963	34233	45553	45553					-0.06769149655269757
SDLGKKKK	8	Unmodified	_SDLGKKKK_					0	0	0			REV__nc|ENSG00000110931|Q96RR4-7|CAMKK2	REV__nc|ENSG00000110931|Q96RR4-7|CAMKK2	MSMS	A375_MHC_IP_R1	1	452.292236328125	2	452.284734	902.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.006	1	46.006	45.506	46.506	0								0	0	0	0.16876	1	16123	16123		2.5775	0	1		+		46635	27172	33964	34234	45554	45554					0.09974064168466157
SDLHMTVGP	9	Unmodified	_SDLHMTVGP_					0	0	0			REV__ENST00000333677.6_1_5:149011902-149012052:+|nuORF	REV__ENST00000333677.6_1_5:149011902-149012052:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	478.1412048339844	2	478.728935	955.443317	-0.40967	-0.00019612	1.9855	0.00095052	1.5758	0.0007544	478.72995611307846	101.07	0.25314	101.07	100.94	101.19	0					7	4	2	0	0	0	0.62767	1	37170	37170		23.148	12.324	1	839380	+		46636	23648	33965	34235	45555	45555					-0.03618738250975184
SDLQMLLGF	9	Unmodified	_SDLQMLLGF_					0	0	0		ENSG00000105229|ENST00000262971|PIAS4;ENST00000593518.1_1_19:4007758-4017708:+|nuORF;ENST00000599999.5_1_19:4007758-4028181:+|nuORF	ENSG00000105229|ENST00000262971|PIAS4	ENSG00000105229|ENST00000262971|PIAS4	MSMS	A375_MHC_IP_R1	1	512.1791381835938	2	512.26261	1022.51067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.5	1	52.5	52	53	0								0	0	0	0.15486	1	18673	18673		12.532	0.29089	1				46637	2580	33966	34236	45556	45556					0.0003129195999918011
SDMEDDEE	8	Unmodified	_SDMEDDEE_					0	0	0		ENSG00000109805|ENST00000251496|NCAPG;ENST00000513226.1_1_4:17812700-17814869:+|nuORF	ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	MSMS	A375_MHC_IP_R1	1	485.1925354003906	2	485.15312	968.291686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.697	1	97.697	97.197	98.197	0								0	0	0	0.16876	1	35893	35893		5.2307	0	1				46638	2894	33967	34237	45557	45557					-0.19372808860009627
SDMEKDRW	8	Unmodified	_SDMEKDRW_					0	0	0			REV__nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	REV__nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	MULTI-MSMS	A375_MHC_IP_R2	2	533.6550903320312	2	533.734748	1065.45494	-1.0027	-0.00053518	-2.1348	-0.0011394	-3.1376	-0.0016746	534.2351010908986	34.407	0.30697	35.159	35.057	35.364	0.75225					6	5	2	0	0	0	0.77515	1	12430	12430		12.532	5.2423	1	617790	+		46639	18965	33968	34238	45558	45558					-0.07516541227641937
SDMHSGLWI	9	Unmodified	_SDMHSGLWI_					0	0	0			REV__ENST00000285279.9_1_7:55539512-55539692:-|nuORF	REV__ENST00000285279.9_1_7:55539512-55539692:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	523.7230224609375	2	523.242209	1044.46987	-0.7666	-0.00040112	1.1091	0.00058032	0.34248	0.0001792	523.2431277195254	54.478	0.70967	55.228	54.865	55.575	0.75075					29	13	3	0	0	0	0.75466	1	20614	20614		7.9102	0	1	4149000	+		46640	23337	33969	34239	45559	45559					-0.05059049359647361
SDNDIRKY	8	Unmodified	_SDNDIRKY_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-SECPEP	A375_MHC_IP_R1	1	506.43524169921875	2	505.748713	1009.48287	-0.11937	-6.0371E-05	-0.29587	-0.00014963	-0.41524	-0.00021	505.7485685923245	21.463	0.30473	21.463	21.301	21.606	0					9	5	2	0	0	0	0.972	1	5682	5682		6.7232	0	1	900890			46641	6934	33970	34240	45560	45560					-0.02148894975903204
SDNDIRKY	8	Unmodified	_SDNDIRKY_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MSMS	A375_MHC_IP_R2	2	505.4863586425781	2	505.748713	1009.48287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.947	1	20.557	20.057	21.057	0.61029								0	0	0	0.16876	1	6168	6168		6.7232	0	1				46642	6934	33970	34240	45561	45561					-0.02148894975903204
SDNEQGLPV	9	Unmodified	_SDNEQGLPV_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	MSMS	A375_MHC_IP_R2	2	479.7021484375	2	479.727446	957.44034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.906	1	73.641	73.141	74.141	0.73541								0	0	0	0.15486	1	27674	27674		13.508	3.434	1				46643	8485	33971	34241	45562	45562					-0.040082901041273544
SDNETFKNLL	10	Unmodified	_SDNETFKNLL_					0	0	0			REV__nc|ENSG00000132792|Q8WYA6-3|CTNNBL1	REV__nc|ENSG00000132792|Q8WYA6-3|CTNNBL1	MULTI-SECPEP	A375_MHC_IP_R1	1	393.9606628417969	3	394.199666	1179.57717	-0.42563	-0.00016778	1.0582	0.00041713	0.63253	0.00024934	394.20012733049265	29.227	0.3575	29.227	28.945	29.302	0					8	6	2	0	0	0	0.93194	1	9049	9049		3.0723	0	1	1738400	+		46644	18681	33972	34242	45563	45563					-0.005438009444333147
SDNETFKNLL	10	Unmodified	_SDNETFKNLL_					0	0	0			REV__nc|ENSG00000132792|Q8WYA6-3|CTNNBL1	REV__nc|ENSG00000132792|Q8WYA6-3|CTNNBL1	MULTI-MATCH	A375_MHC_IP_R2	2		3	394.199666	1179.57717	-0.63407	-0.00024995	1.1183	0.00044082	0.48419	0.00019087	394.5344005872268	28.51	0.25393	29.189	28.96	29.214	0.67857	-0.01915	3.0309E-05	NaN	5.4027	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1303700	+		46645	18681	33972	34242							-0.005438009444333147
SDNKDFSSF	9	Unmodified	_SDNKDFSSF_					0	0	0			REV__ENSG00000155636|ENST00000286070|RBM45	REV__ENSG00000155636|ENST00000286070|RBM45	MSMS	A375_MHC_IP_R1	1	523.6925048828125	2	523.724904	1045.43525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.764	1	89.764	89.264	90.264	0								0	0	0	0.1499	1	32979	32979		21.747	2.4897	1		+		46646	19931	33973	34243	45564	45564					-0.08564593966752909
SDPALLSFAEY	11	Unmodified	_SDPALLSFAEY_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000454465.1_1_2:87398353-87423749:+|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MSMS	A375_MHC_IP_R1	1	606.8549194335938	2	606.792786	1211.57102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.889	1	89.889	89.389	90.389	0								0	0	0	0.15377	1	33030	33030		18.146	5.6148	1				46647	6006	33974	34244	45565	45565					-0.026303191759552647
SDQCNCPKEV	10	Unmodified	_SDQCNCPKEV_					0	0	0			REV__ENSG00000175691|ENST00000314531|ZNF77	REV__ENSG00000175691|ENST00000314531|ZNF77	MULTI-SECPEP	A375_MHC_IP_R1	1	562.1309204101562	2	561.731348	1121.44814	-0.45448	-0.0002553	-1.6443	-0.00092365	-2.0988	-0.0011789	561.7311631354492	61.624	0.86868	61.624	61.279	62.148	0					22	16	2	0	0	0	0.77698	1	22255	22255		17.443	0	1	2797900	+		46648	21358	33975	34245	45566	45566					-0.1077222217054441
SDQGRFIW	8	Unmodified	_SDQGRFIW_					0	0	0			REV__ENST00000599589.5_3_19:42433018-42434019:+|nuORF	REV__ENST00000599589.5_3_19:42433018-42434019:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	505.1484069824219	2	504.748516	1007.48248	-0.66531	-0.00033582	0.31434	0.00015866	-0.35098	-0.00017715	504.7485573035044	73.834	0.61136	74.572	74.245	74.856	0.73725					19	11	2	0	0	0	0.97021	1	28037	28037		15.847	0	1	1923500	+		46649	26493	33976	34246	45567	45567					-0.020962699051096934
SDQILGQQF	9	Unmodified	_SDQILGQQF_					0	0	0			REV__ENSG00000109323|ENST00000647097|MANBA	REV__ENSG00000109323|ENST00000647097|MANBA	MULTI-SECPEP	A375_MHC_IP_R1	1	518.6591186523438	2	518.258914	1034.50327	-0.58097	-0.00030109	0.44463	0.00023043	-0.13634	-7.0661E-05	518.2591512284954	58.353	0.50732	58.353	58.126	58.633	0					19	9	3	0	0	0	0.38578	1	20937	20937		34.402	19.153	1	4943600	+		46650	17577	33977	34247	45568	45568					-0.01259724316082611
SDQILGQQF	9	Unmodified	_SDQILGQQF_					0	0	0			REV__ENSG00000109323|ENST00000647097|MANBA	REV__ENSG00000109323|ENST00000647097|MANBA	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1422119140625	2	518.258914	1034.50327	-1.0104	-0.00052363	0.044079	2.2844E-05	-0.96629	-0.00050079	518.2588910105784	57.671	0.55956	58.42	58.12	58.679	0.74894					21	10	3	0	0	0	0.16676	1	21728	21728		49.933	15.831	1	4859300	+		46651	17577	33977	34247	45569	45569					-0.01259724316082611
SDQILPHHIL	10	Unmodified	_SDQILPHHIL_					0	0	0		nc|ENSG00000136449|Q8TBZ2|MYCBPAP;ENSG00000136449|ENST00000323776|MYCBPAP;ENST00000470609.5_1_17:48585906-48599496:+|nuORF	nc|ENSG00000136449|Q8TBZ2|MYCBPAP	nc|ENSG00000136449|Q8TBZ2|MYCBPAP	MULTI-SECPEP	A375_MHC_IP_R1	1	586.7324829101562	2	586.824755	1171.63496	-0.20354	-0.00011944	4.2002	0.0024648	3.9967	0.0023454	586.8269308428311	40.737	0.30382	40.737	40.509	40.813	0					6	5	2	0	0	0	0.77698	1	14030	14030		28.495	19.147	1	2227000			46652	4789	33978	34248	45570	45570					0.056005057716674855
SDQLQQQDPP	10	Unmodified	_SDQLQQQDPP_					0	0	0		ENSG00000269113|ENST00000606738|TRABD2B	ENSG00000269113|ENST00000606738|TRABD2B	ENSG00000269113|ENST00000606738|TRABD2B	MULTI-MSMS	A375_MHC_IP_R2	2	578.2067260742188	2	578.267467	1154.52038	-0.41769	-0.00024153	0.098057	5.6703E-05	-0.31963	-0.00018483	578.2674130582496	26.831	0.81786	27.491	27.313	28.131	0.65992					50	15	4	0	0	0	0.70615	1	9341	9341		9.544	1.0997	1	66177000			46653	9978	33979	34249	45571	45571					-0.05069848500943408
SDQSWSYTY	9	Unmodified	_SDQSWSYTY_					0	0	0			REV__ENSG00000141506|ENST00000447110|PIK3R5	REV__ENSG00000141506|ENST00000447110|PIK3R5	MULTI-MSMS	A375_MHC_IP_R1	1	569.1298217773438	2	568.730186	1135.44582	-0.30469	-0.00017329	-1.0034	-0.00057068	-1.3081	-0.00074397	568.7293657640636	77.645	0.81284	77.645	77.286	78.099	0					31	15	3	0	0	0	0.4867	1	28347	28347		20.454	1.1966	1	2381000	+		46654	19274	33980	34250	45572	45572					-0.11648611312330104
SDQSWSYTY	9	Unmodified	_SDQSWSYTY_					0	0	0			REV__ENSG00000141506|ENST00000447110|PIK3R5	REV__ENSG00000141506|ENST00000447110|PIK3R5	MULTI-SECPEP	A375_MHC_IP_R1	1	568.6478881835938	2	568.730186	1135.44582	-0.30469	-0.00017329	-1.0034	-0.00057068	-1.3081	-0.00074397	568.7293657640636	77.645	0.81284	77.645	77.286	78.099	0					31	15	3	0	0	0	0.65246	1	28322	28322		21.747	6.4982	1	2381000	+		46655	19274	33980	34250	45573	45573					-0.11648611312330104
SDQSWSYTY	9	Unmodified	_SDQSWSYTY_					0	0	0			REV__ENSG00000141506|ENST00000447110|PIK3R5	REV__ENSG00000141506|ENST00000447110|PIK3R5	MULTI-SECPEP	A375_MHC_IP_R2	2	569.1495361328125	2	568.730186	1135.44582	-0.34456	-0.00019596	-0.71727	-0.00040793	-1.0618	-0.00060389	568.7295829695811	77.089	1.0126	77.832	77.404	78.416	0.74293					29	19	3	0	0	0	0.71541	1	29258	29258		16.942	6.8684	1	2001700	+		46656	19274	33980	34250	45574	45574					-0.11648611312330104
SDRCWLAINLY	11	Unmodified	_SDRCWLAINLY_					0	0	0			REV__PDZD8|p.P720S|1|0.26|ENSG00000165650|chr10:117284575-117284575|G/A|missense_variant	REV__PDZD8|p.P720S|1|0.26|ENSG00000165650|chr10:117284575-117284575|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	452.292236328125	3	451.892179	1352.65471	-0.048995	-2.2141E-05	0.74842	0.0003382	0.69942	0.00031606	451.8920310249876	45.886	0.75999	45.886	45.585	46.345	0					28	14	3	0	0	0	0.99411	1	16123	16123		9.7643	3.1408	1	2799000	+		46657	27761	33981	34251	45575	45575					-0.007514862798871036
SDRGPFYHSR	10	Unmodified	_SDRGPFYHSR_					0	0	0		BRINP1|p.H49Y|1|0.26|ENSG00000078725|chr9:119313211-119313211|G/A|missense_variant	BRINP1|p.H49Y|1|0.26|ENSG00000078725|chr9:119313211-119313211|G/A|missense_variant	BRINP1|p.H49Y|1|0.26|ENSG00000078725|chr9:119313211-119313211|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	407.88677978515625	3	407.863499	1220.56867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.019	1	23.65	23.15	24.15	0.63014								0	0	0	0.15089	1	7353	7353		10.315	3.2781	1				46658	251	33982	34252	45576	45576					-0.032793100704111566
SDRLPSRFF	9	Unmodified	_SDRLPSRFF_					0	0	0		FAM83H|p.L836F|1|0.22|ENSG00000180921|chr8:143726955-143726955|G/A|missense_variant	FAM83H|p.L836F|1|0.22|ENSG00000180921|chr8:143726955-143726955|G/A|missense_variant	FAM83H|p.L836F|1|0.22|ENSG00000180921|chr8:143726955-143726955|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	375.572509765625	3	375.533091	1123.57744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.767	1	34.767	34.267	35.267	0								0	0	0	0.15486	1	11491	11491		7.609	0.9855	1				46659	13978	33983	34253	45577	45577					0.020596635660922402
SDRLVKKSFI	10	Unmodified	_SDRLVKKSFI_					0	0	0			REV__nc|ENSG00000127526|Q96K37-3|SLC35E1	REV__nc|ENSG00000127526|Q96K37-3|SLC35E1	MULTI-MSMS	A375_MHC_IP_R1	1	397.9678955078125	3	398.239796	1191.69756	-0.027	-1.0752E-05	-0.13931	-5.5478E-05	-0.16631	-6.623E-05	398.2396413762437	71.272	0.60979	71.272	71.005	71.615	0					26	11	3	0	0	0	0.70312	1	25926	25926		10.899	0	1	3713400	+		46660	18424	33984	34254	45578	45578					0.10937651839844875
SDSAYNPSTL	10	Unmodified	_SDSAYNPSTL_					0	0	0		ENSG00000188295|ENST00000448299|ZNF669;nc|ENSG00000188295|Q96BR6|ZNF669	ENSG00000188295|ENST00000448299|ZNF669	ENSG00000188295|ENST00000448299|ZNF669	MULTI-MSMS	A375_MHC_IP_R2	2	529.1890869140625	2	527.738011	1053.46147	-0.99372	-0.00052442	-0.019926	-1.0516E-05	-1.0136	-0.00053494	527.7379956362175	52.711	1.4234	53.462	53.082	54.505	0.75105					92	27	5	0	0	0	0.60556	1	19974	19974		20.454	2.3186	1	207980000			46661	8897	33985	34255	45579	45579					-0.06312324795294444
SDSDPTLDFC	10	Unmodified	_SDSDPTLDFC_					0	0	0			REV__ENSG00000110046|ENST00000377264|ATG2A	REV__ENSG00000110046|ENST00000377264|ATG2A	MSMS	A375_MHC_IP_R1	1	550.2137451171875	2	550.216054	1098.41756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.517	1	53.517	53.017	54.017	0								0	0	0	0.1356	1	19082	19082		18.146	2.2992	1		+		46662	17609	33986	34256	45580	45580					-0.12771677283922145
SDSDSDEV	8	Unmodified	_SDSDSDEV_					0	0	0		nc|ENSG00000167674|Q7Z4V5-2|HDGFL2;ENSG00000167674|ENST00000616600|HDGFL2;nc|ENSG00000167674|Q7Z4V5-4|HDGFL2;nc|ENSG00000167674|Q7Z4V5-3|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	MSMS	A375_MHC_IP_R2	2	427.14508056640625	2	427.156519	852.298486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.431	1	87.164	86.664	87.664	0.733								0	0	0	0.16876	1	32869	32869		5.7604	2.8712	1				46663	7209	33987	34257	45581	45581					-0.1335712791712922
SDSGKPYYY	9	Unmodified	_SDSGKPYYY_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;ENST00000467114.2_1_2:153535806-153549567:-|nuORF	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	A375_MHC_IP_R1	1	540.2156982421875	2	540.237647	1078.46074	-0.77122	-0.00041664	0.40478	0.00021868	-0.36644	-0.00019797	540.2377957461284	32.218	0.51054	32.218	32.024	32.535	0					21	9	3	0	0	0	0.037683	3	10376	10376;10437;10488		69.105	31.131	1	4539300			46664	9050	33988	34258	45582;45583;45584	45582					-0.0753511944433285
SDSGKPYYY	9	Unmodified	_SDSGKPYYY_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;ENST00000467114.2_1_2:153535806-153549567:-|nuORF	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	A375_MHC_IP_R2	2	540.6373291015625	2	540.237647	1078.46074	-0.86689	-0.00046833	0.36439	0.00019686	-0.5025	-0.00027147	540.2377060921394	31.635	0.50966	32.372	32.095	32.605	0.73692					20	9	3	0	0	0	0.04447	2	11195	11195;11228		66.457	35.82	1	3641700			46665	9050	33988	34258	45585;45586	45585					-0.0753511944433285
SDSLVQKGY	9	Unmodified	_SDSLVQKGY_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-SECPEP	A375_MHC_IP_R2	2	499.1527099609375	2	498.753464	995.492375	-1.3206	-0.00065866	0.47549	0.00023715	-0.84513	-0.00042151	498.75355619458924	29.374	0.35542	30.073	29.93	30.286	0.69872					12	6	2	0	0	0	0.056023	1	10267	10267		66.457	35.82	1	6373600			46666	3365	33989	34259	45587	45587					-0.0055512669038080276
SDSLVQKGY	9	Unmodified	_SDSLVQKGY_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MATCH	A375_MHC_IP_R1	1		2	498.753464	995.492375	-0.7254	-0.0003618	0.10524	5.2487E-05	-0.62017	-0.00030931	498.753279756606	30.024	0.4529	30.024	29.848	30.301	0	-0.024345	-0.00018123	NaN	66.457	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7553000			46667	3365	33989	34259							-0.0055512669038080276
SDSQIVERNFN	11	Unmodified	_SDSQIVERNFN_					0	0	0			REV__nc|ENSG00000143870|Q15084-3|PDIA6	REV__nc|ENSG00000143870|Q15084-3|PDIA6	MSMS	A375_MHC_IP_R1	1	436.9229736328125	3	436.877474	1307.61059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.879	1	45.879	45.379	46.379	0								0	0	0	0.16191	1	16073	16073		8.7518	0.46535	1		+		46668	19395	33990	34260	45588	45588					-0.030907991725143802
SDSSVSLDHE	10	Unmodified	_SDSSVSLDHE_					0	0	0			REV__ENST00000550865.1_1_12:76784181-76788455:-|nuORF	REV__ENST00000550865.1_1_12:76784181-76788455:-|nuORF	MSMS	A375_MHC_IP_R2	2	538.1459350585938	2	538.23055	1074.44655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.817	1	46.582	46.082	47.082	0.76519								0	0	0	0.14601	1	17140	17140		25.399	10.561	1		+		46669	16940	33991	34261	45589	45589					-0.08769816663243546
SDTSDDDDDP	10	Unmodified	_SDTSDDDDDP_					0	0	0		nc|ENSG00000146414|Q149N8-2|SHPRH;ENST00000433355.6_1_6:146231577-146267398:-|nuORF;nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH	nc|ENSG00000146414|Q149N8-2|SHPRH	nc|ENSG00000146414|Q149N8-2|SHPRH	MULTI-MSMS	A375_MHC_IP_R1	1	541.5755615234375	2	541.175637	1080.33672	-0.59458	-0.00032177	-0.87107	-0.0004714	-1.4656	-0.00079317	541.1759019565258	59.726	0.71052	59.726	59.245	59.955	0					30	13	3	0	0	0	0.70925	1	21463	21463		8.1555	1.9497	1	4410200			46670	5622	33992	34262	45590	45590					-0.20023286793116313
SDTSDDDDDP	10	Unmodified	_SDTSDDDDDP_					0	0	0		nc|ENSG00000146414|Q149N8-2|SHPRH;ENST00000433355.6_1_6:146231577-146267398:-|nuORF;nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH	nc|ENSG00000146414|Q149N8-2|SHPRH	nc|ENSG00000146414|Q149N8-2|SHPRH	MULTI-MSMS	A375_MHC_IP_R2	2	541.5753784179688	2	541.175637	1080.33672	-1.2365	-0.00066918	-0.89712	-0.0004855	-2.1337	-0.0011547	541.1757491270704	59.124	0.65816	59.871	59.54	60.198	0.74714					27	12	3	0	0	0	0.71466	1	22342	22342		5.7319	1.4026	1	4644700			46671	5622	33992	34262	45591	45591					-0.20023286793116313
SDVAVGTLANF	11	Unmodified	_SDVAVGTLANF_					0	0	0			REV__TRIM3|p.P672L|1|0.38|ENSG00000110171|chr11:6449373-6449373|G/A|missense_variant	REV__TRIM3|p.P672L|1|0.38|ENSG00000110171|chr11:6449373-6449373|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	546.67724609375	2	547.279846	1092.54514	-0.61346	-0.00033574	0.31082	0.00017011	-0.30264	-0.00016563	547.2800798022823	76.995	0.96657	76.995	76.319	77.286	0					28	18	2	0	0	0	0.95991	1	28005	28005		13.042	13.042	1	12539000	+		46672	28901	33993	34263	45592	45592					0.002568313724395921
SDVDPAHAQHY	11	Unmodified	_SDVDPAHAQHY_					0	0	0		ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;IQGAP2|p.K738Ifs*10|1|0.09|ENSG00000145703|chr5:76654234-76654244|AGAGCTATCTT/-|frameshift_variant	ENSG00000145703|ENST00000274364|IQGAP2	ENSG00000145703|ENST00000274364|IQGAP2	MULTI-SECPEP	A375_MHC_IP_R2	2	620.9866333007812	2	620.273084	1238.53161	-0.72922	-0.00045232	1.1719	0.00072688	0.44265	0.00027456	620.2735220583038	30.759	0.65612	31.477	30.962	31.618	0.71857					24	12	3	0	0	0	0.9889	1	10741	10741		8.1555	4.559	1	2230800			46673	5571	33994	34264	45593	45593					-0.07811026406807287
SDVHLNFY	8	Unmodified	_SDVHLNFY_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MSMS	A375_MHC_IP_R1	1	498.1349182128906	2	497.735074	993.455596	-0.77545	-0.00038597	0.13751	6.8442E-05	-0.63794	-0.00031753	497.73515281166425	67.874	0.70805	67.874	67.552	68.26	0					30	13	3	0	0	0	0.19889	2	24570	24534;24570		67.344	31.3	1	6000600			46674	1519	33995	34265	45594;45595	45595					-0.04139378516288161
SDVHLNFY	8	Unmodified	_SDVHLNFY_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-SECPEP	A375_MHC_IP_R2	2	498.1347351074219	2	497.735074	993.455596	-0.55326	-0.00027538	-0.20189	-0.00010049	-0.75515	-0.00037587	497.73490053878555	67.04	0.7103	67.777	67.495	68.205	0.73631					31	13	3	0	0	0	0.25559	1	25364	25364		57.471	21.427	1	5941200			46675	1519	33995	34265	45596	45596					-0.04139378516288161
SDVLDEVLF	9	Unmodified	_SDVLDEVLF_					0	0	0			REV__RTN3|p.R947G|1|0.69|ENSG00000133318|chr11:63752607-63752607|C/G|missense_variant	REV__RTN3|p.R947G|1|0.69|ENSG00000133318|chr11:63752607-63752607|C/G|missense_variant	MSMS	A375_MHC_IP_R1	1	518.6441650390625	2	518.763497	1035.51244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.343	1	86.343	85.843	86.843	0								0	0	0	0.15486	1	31659	31659		12.532	0	1		+		46676	18359	33996	34266	45597	45597					-0.003893757504329187
SDVSLTACKV	10	Unmodified	_SDVSLTACKV_					0	0	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29912792-29913229:+|nuORF;ENST00000494367.1_1_6:29976031-29977313:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-SECPEP	A375_MHC_IP_R1	1	512.162841796875	2	511.762975	1021.5114	-0.34519	-0.00017666	0.55943	0.0002863	0.21424	0.00010964	511.76339306551506	51.82	2.3868	51.82	51.168	53.555	0					60	46	2	0	0	0	0.018542	1	18363	18363		114.19	58.009	1	22742000			46677	9539	33997	34267	45598	45598					0.001500866090168529
SDVSLTACKV	10	Unmodified	_SDVSLTACKV_					0	0	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29912792-29913229:+|nuORF;ENST00000494367.1_1_6:29976031-29977313:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-SECPEP	A375_MHC_IP_R2	2	512.162353515625	2	511.762975	1021.5114	-0.89423	-0.00045763	0.68186	0.00034895	-0.21237	-0.00010868	511.7634976000655	51.035	1.826	51.789	51.108	52.934	0.75406					59	35	2	0	0	0	0.020754	1	19163	19163		110.79	65.093	1	25326000			46678	9539	33997	34267	45599	45599					0.001500866090168529
SDVSLTACKV	10	Carbamidomethyl (C)	_SDVSLTAC(Carbamidomethyl (C))KV_	SDVSLTAC(1)KV		SDVSLTAC(150)KV		0	1	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29912792-29913229:+|nuORF;ENST00000494367.1_1_6:29976031-29977313:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-SECPEP	A375_MHC_IP_R1	1	540.6734619140625	2	540.273706	1078.53286	-0.69074	-0.00037319	-0.23528	-0.00012712	-0.92602	-0.00050031	540.2734899778949	40.122	0.91727	40.122	39.845	40.762	0					30	17	3	0	0	0	0.036848	1	13749	13749		151.48	93.758	1	35811000			46679	9539	33997	34268	45600	45600	48				-0.003265283622795323
SDVSLTACKV	10	Carbamidomethyl (C)	_SDVSLTAC(Carbamidomethyl (C))KV_	SDVSLTAC(1)KV		SDVSLTAC(170)KV		0	1	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29912792-29913229:+|nuORF;ENST00000494367.1_1_6:29976031-29977313:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-MSMS	A375_MHC_IP_R2	2	540.6729736328125	2	540.273706	1078.53286	-0.91062	-0.00049198	-0.37942	-0.00020499	-1.29	-0.00069697	540.273572705409	39.419	0.81282	40.194	39.914	40.727	0.77451					29	15	2	0	0	0	3.2914E-05	1	14533	14533		171.46	111.39	1	57804000			46680	9539	33997	34268	45601	45601	48				-0.003265283622795323
SDVSVVRRT	9	Unmodified	_SDVSVVRRT_					0	0	0		ENSG00000143653|ENST00000366510|SCCPDH	ENSG00000143653|ENST00000366510|SCCPDH	ENSG00000143653|ENST00000366510|SCCPDH	MULTI-SECPEP	A375_MHC_IP_R2	2	1019.1737060546875	1	1018.56398	1017.55671	0.19458	0.00019819	3.4612	0.0035255	3.6558	0.0037237	1018.5633716991761	116.23	0.25627	116.89	116.82	117.07	0.65962					5	4	2	0	0	0	0.73363	1	43877	43877		15.847	4.2069	1	10856000			46681	5422	33998	34269	45602	45602					0.048630731864250265
SDYPSTKK	8	Unmodified	_SDYPSTKK_					0	0	0			REV__ENSG00000116199|ENST00000263733|FAM20B	REV__ENSG00000116199|ENST00000263733|FAM20B	MSMS	A375_MHC_IP_R1	1	463.2084045410156	2	463.234907	924.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.61	1	147.61	147.11	148.11	0								0	0	0	0.16876	1	56395	56395		2.0598	1.2661	1		+		46682	17945	33999	34270	45603	45603					-0.00998798236150833
SDYSDSRGY	9	Unmodified	_SDYSDSRGY_					0	0	0			REV__ENST00000560893.1_1_15:35693406-35693832:+|nuORF	REV__ENST00000560893.1_1_15:35693406-35693832:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	525.61181640625	2	525.21216	1048.40977	-0.65655	-0.00034483	-0.13079	-6.8694E-05	-0.78735	-0.00041352	525.2121334616091	66.162	0.60804	66.162	65.921	66.529	0					21	11	3	0	0	0	0.55818	1	23978	23978		16.942	0	1	2381400	+		46683	26174	34000	34271	45604	45604					-0.11250068489175646
SDYYSQSPY	9	Unmodified	_SDYYSQSPY_					0	0	0		nc|ENSG00000177752|Q8N8F6-4|YIPF7;nc|ENSG00000177752|Q8N8F6-5|YIPF7;nc|ENSG00000177752|Q8N8F6-2|YIPF7;ENSG00000177752|ENST00000415895|YIPF7	nc|ENSG00000177752|Q8N8F6-4|YIPF7	nc|ENSG00000177752|Q8N8F6-4|YIPF7	MULTI-MSMS	A375_MHC_IP_R1	1	555.1707153320312	2	555.224736	1108.43492	-0.67163	-0.00037291	0.8513	0.00047266	0.17967	9.9756E-05	555.2253602565827	65.506	0.91643	65.506	65.055	65.972	0					38	17	3	0	0	0	0.6324	1	23607	23607		13.042	3.6593	1	5078400			46684	8109	34001	34272	45605	45605					-0.11496013686587503
SEAAAPRAF	9	Unmodified	_SEAAAPRAF_					0	0	0		ENST00000432615.5_1_7:158447451-158457424:-|nuORF;ENST00000467785.5_1_7:158448006-158486027:-|nuORF;ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2	ENST00000432615.5_1_7:158447451-158457424:-|nuORF	ENST00000432615.5_1_7:158447451-158457424:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	460.6351013183594	2	460.235242	918.45593	-0.56557	-0.0002603	0.23285	0.00010717	-0.33272	-0.00015313	460.23531736526974	30.478	0.40283	30.478	30.351	30.754	0					17	7	3	0	0	0	0.030038	1	9704	9704		74.929	36.955	1	7255000			46685	11880	34002	34273	45606	45606					-0.006559587964375169
SEAAAPRAF	9	Unmodified	_SEAAAPRAF_					0	0	0		ENST00000432615.5_1_7:158447451-158457424:-|nuORF;ENST00000467785.5_1_7:158448006-158486027:-|nuORF;ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2	ENST00000432615.5_1_7:158447451-158457424:-|nuORF	ENST00000432615.5_1_7:158447451-158457424:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	460.6349792480469	2	460.235242	918.45593	-0.83482	-0.00038421	0.22028	0.00010138	-0.61453	-0.00028283	460.2352988138783	29.864	0.50389	30.563	30.286	30.79	0.69872					16	9	2	0	0	0	0.047602	1	10440	10440		65.235	29.191	1	8032600			46686	11880	34002	34273	45607	45607					-0.006559587964375169
SEAAAQYN	8	Unmodified	_SEAAAQYN_					0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	MULTI-MSMS	A375_MHC_IP_R1	1	427.5878601074219	2	427.187957	852.361361	-0.28355	-0.00012113	0.58855	0.00025142	0.305	0.00013029	427.18813293924796	65.945	0.71007	65.945	65.616	66.326	0					20	13	2	0	0	0	0.76248	1	23852	23852		16.942	3.8998	1	2950200			46687	4032	34003	34274	45608	45608					-0.0707251733844032
SEAAAQYN	8	Unmodified	_SEAAAQYN_					0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	MULTI-SECPEP	A375_MHC_IP_R2	2	427.6190185546875	2	427.187957	852.361361	-0.26355	-0.00011259	-0.17144	-7.3236E-05	-0.43499	-0.00018582	427.1878474274366	65.173	0.71128	65.911	65.562	66.273	0.73812					33	13	3	0	0	0	0.96266	1	24778	24778		11.64	3.7301	1	3058100			46688	4032	34003	34274	45609	45609					-0.0707251733844032
SEAAGTRAPW	10	Unmodified	_SEAAGTRAPW_					0	0	0			REV__ENST00000252542.8_1_19:5587138-5587390:-|nuORF	REV__ENST00000252542.8_1_19:5587138-5587390:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	523.140625	2	523.256705	1044.49886	-0.62396	-0.00032649	-0.072903	-3.8147E-05	-0.69686	-0.00036464	523.2564309835105	31.121	0.25231	31.121	30.959	31.211	0					7	4	2	0	0	0	0.77204	1	9975	9975		16.149	5.3496	1	1137100	+		46689	23130	34004	34275	45610	45610					-0.021611887390236006
SEAAINRQI	9	Unmodified	_SEAAINRQI_					0	0	0		ENSG00000181867|ENST00000321339|FTMT;ENST00000533138.1_1_11:61732822-61734897:-|nuORF;ENST00000534719.1_1_11:61732389-61734897:-|nuORF;ENSG00000167996|ENST00000273550|FTH1	ENSG00000181867|ENST00000321339|FTMT	ENSG00000181867|ENST00000321339|FTMT	MULTI-SECPEP	A375_MHC_IP_R1	1	501.6719665527344	2	501.272355	1000.53016	-0.48392	-0.00024257	0.10555	5.2909E-05	-0.37837	-0.00018966	501.27227586459935	28.193	0.40324	28.193	28.037	28.44	0					23	7	4	0	0	0	0.03109	1	8684	8684		103.35	59.495	1	5806000			46690	8366	34005	34276	45611	45611					0.02991384295091848
SEAAINRQI	9	Unmodified	_SEAAINRQI_					0	0	0		ENSG00000181867|ENST00000321339|FTMT;ENST00000533138.1_1_11:61732822-61734897:-|nuORF;ENST00000534719.1_1_11:61732389-61734897:-|nuORF;ENSG00000167996|ENST00000273550|FTH1	ENSG00000181867|ENST00000321339|FTMT	ENSG00000181867|ENST00000321339|FTMT	MULTI-SECPEP	A375_MHC_IP_R2	2	501.6719970703125	2	501.272355	1000.53016	-0.55426	-0.00027783	-0.19493	-9.7712E-05	-0.74919	-0.00037555	501.27231007759275	27.547	0.45553	28.225	28.047	28.502	0.67857					18	8	3	0	0	0	0.14572	1	9461	9461		53.833	39.927	1	5554200			46691	8366	34005	34276	45612	45612					0.02991384295091848
SEAALEKKL	9	Unmodified	_SEAALEKKL_					0	0	0		ENSG00000141425|ENST00000399022|RPRD1A;ENST00000590898.5_1_18:33620811-33647397:-|nuORF	ENSG00000141425|ENST00000399022|RPRD1A	ENSG00000141425|ENST00000399022|RPRD1A	MULTI-MSMS	A375_MHC_IP_R2	2	495.1869812011719	2	494.787307	987.560061	-0.75305	-0.0003726	0.48343	0.00023919	-0.26963	-0.00013341	494.787417798304	23.677	0.30535	24.308	24.129	24.435	0.63014					10	5	3	0	0	0	0.14659	1	7688	7688		42.312	20.776	1	5202800			46692	5238	34006	34277	45613	45613					0.06578323240421469
SEAAPPAPPV	10	Unmodified	_SEAAPPAPPV_					0	0	0		ENSG00000002016|ENST00000358495|RAD52;ENST00000535376.5_1_12:1023254-1025717:-|nuORF;ENST00000488642.6_1_12:1023254-1036092:-|nuORF;ENST00000228345.9_1_12:1022559-1036092:-|nuORF	ENSG00000002016|ENST00000358495|RAD52	ENSG00000002016|ENST00000358495|RAD52	MULTI-MSMS	A375_MHC_IP_R1	1	468.6689453125	2	468.245275	934.475997	-0.64728	-0.00030309	0.79251	0.00037109	0.14523	6.8002E-05	468.24503578604833	41.334	0.35606	41.334	41.114	41.47	0					13	6	3	0	0	0	0.66712	1	14277	14277		15.847	0	1	1279300			46693	852	34007	34278	45614	45614					0.006137921435083626
SEAARVLQF	9	Unmodified	_SEAARVLQF_					0	0	0		nc|ENSG00000156958|Q01415-2|GALK2;ENSG00000156958|ENST00000560031|GALK2;ENST00000560119.5_1_15:49584731-49620353:+|nuORF	nc|ENSG00000156958|Q01415-2|GALK2	nc|ENSG00000156958|Q01415-2|GALK2	MULTI-SECPEP	A375_MHC_IP_R2	2	511.1766662597656	2	510.777274	1019.53999	-0.95435	-0.00048746	0.75685	0.00038658	-0.19751	-0.00010088	510.7772451516757	62.103	0.81052	62.846	62.319	63.13	0.74263					37	15	4	0	0	0	0.061442	1	23544	23544		82.529	30.9	1	4331100			46694	6219	34008	34279	45615	45615					0.031005723004795982
SEAAYKEAF	9	Unmodified	_SEAAYKEAF_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	A375_MHC_IP_R1	1	508.17657470703125	2	508.24019	1014.46583	-0.48831	-0.00024818	-0.15783	-8.0216E-05	-0.64614	-0.00032839	508.2400393153805	36.239	0.71142	36.239	35.932	36.644	0					32	13	4	0	0	0	0.10637	1	12072	12072		49.527	18.891	1	12048000			46695	4124	34009	34280	45616	45616					-0.04082815581716659
SEAAYKEAF	9	Unmodified	_SEAAYKEAF_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	A375_MHC_IP_R2	2	508.1763916015625	2	508.24019	1014.46583	-0.96864	-0.0004923	0.42378	0.00021538	-0.54486	-0.00027692	508.2402612157676	35.495	0.65818	36.258	35.98	36.638	0.76338					27	12	3	0	0	0	0.28079	1	12802	12802		32.037	15.095	1	14703000			46696	4124	34009	34280	45617	45617					-0.04082815581716659
SEACCCCCGD	10	Unmodified	_SEACCCCCGD_					0	0	0		ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC;nc|ENSG00000135272|Q9P1T7-1|MDFIC	ENST00000431629.5_2_7:114654517-114655986:+|nuORF	ENST00000431629.5_2_7:114654517-114655986:+|nuORF	MSMS	A375_MHC_IP_R1	1	497.1610412597656	2	497.115591	992.216629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.33	1	44.33	43.83	44.83	0								0	0	0	0.15631	1	15461	15461		0.35063	0.35063	1				46697	4663	34010	34281	45618	45618					-0.27979052459750164
SEACCCCCGDE	11	Unmodified	_SEACCCCCGDE_					0	0	0		ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC;nc|ENSG00000135272|Q9P1T7-1|MDFIC	ENST00000431629.5_2_7:114654517-114655986:+|nuORF	ENST00000431629.5_2_7:114654517-114655986:+|nuORF	MSMS	A375_MHC_IP_R1	1	561.6764526367188	2	561.636888	1121.25922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.699	1	84.699	84.199	85.199	0								0	0	0	0.16249	1	31030	31030		5.7319	5.1304	1				46698	4663	34011	34282	45619	45619					-0.2965570212218154
SEADFSIHF	9	Unmodified	_SEADFSIHF_					0	0	0		ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170;nc|ENSG00000154608|Q96L14|CEP170P1;nc|ENSG00000143702|Q5SW79-2|CEP170;ENST00000439296.2_1_1:243289753-243299542:-|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	526.6651611328125	2	526.737814	1051.46108	-0.40217	-0.00021184	-0.58304	-0.00030711	-0.98521	-0.00051895	526.737699148144	88.439	1.323	88.439	88.103	89.426	0					55	25	4	0	0	0	0.010819	1	32477	32477		131.3	80.443	1	17823000			46699	5425	34013	34283	45620	45620					-0.06259699724478196
SEADFSIHF	9	Unmodified	_SEADFSIHF_					0	0	0		ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170;nc|ENSG00000154608|Q96L14|CEP170P1;nc|ENSG00000143702|Q5SW79-2|CEP170;ENST00000439296.2_1_1:243289753-243299542:-|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	527.18505859375	2	526.737814	1051.46108	-0.38173	-0.00020107	-0.46548	-0.00024518	-0.84721	-0.00044626	526.7376752100447	87.799	1.3147	88.531	87.965	89.279	0.7318					69	25	4	0	0	0	0.0093345	1	33458	33458		104.8	60.941	1	14133000			46700	5425	34013	34283	45621	45621					-0.06259699724478196
SEADLQNQF	9	Unmodified	_SEADLQNQF_					0	0	0		nc|ENSG00000198000|Q76FK4-4|NOL8;ENSG00000198000|ENST00000442668|NOL8;ENST00000535649.1_1_9:95085672-95087599:-|nuORF;ENST00000538215.5_1_9:95082633-95087599:-|nuORF;ENST00000543985.5_1_9:95082633-95087599:-|nuORF;NOL8|p.L834Afs*3|1|0.32|ENSG00000198000|chr9:92310649-92310650|-/T|frameshift_variant	nc|ENSG00000198000|Q76FK4-4|NOL8	nc|ENSG00000198000|Q76FK4-4|NOL8	MULTI-MSMS	A375_MHC_IP_R1	1	526.2208862304688	2	526.238178	1050.4618	-0.41121	-0.00021639	0.035726	1.88E-05	-0.37548	-0.00019759	526.2382245275727	56.962	0.71414	56.962	56.65	57.364	0					31	13	4	0	0	0	0.51106	1	20371	20371		19.257	3.4098	1	6176200			46701	9219	34014	34284	45622	45622					-0.06140905075426417
SEADLQNQF	9	Unmodified	_SEADLQNQF_					0	0	0		nc|ENSG00000198000|Q76FK4-4|NOL8;ENSG00000198000|ENST00000442668|NOL8;ENST00000535649.1_1_9:95085672-95087599:-|nuORF;ENST00000538215.5_1_9:95082633-95087599:-|nuORF;ENST00000543985.5_1_9:95082633-95087599:-|nuORF;NOL8|p.L834Afs*3|1|0.32|ENSG00000198000|chr9:92310649-92310650|-/T|frameshift_variant	nc|ENSG00000198000|Q76FK4-4|NOL8	nc|ENSG00000198000|Q76FK4-4|NOL8	MULTI-MSMS	A375_MHC_IP_R2	2	526.6871948242188	2	526.238178	1050.4618	-0.76088	-0.0004004	0.13329	7.0145E-05	-0.62758	-0.00033026	526.2382275908436	56.348	0.91903	57.098	56.591	57.51	0.75015					34	17	3	0	0	0	0.021889	1	21340	21340		81.89	47.488	1	6125300			46702	9219	34014	34284	45623	45623					-0.06140905075426417
SEADNRKMS	9	Unmodified	_SEADNRKMS_					0	0	0		ENST00000498205.5_1_3:156260994-156266845:-|nuORF;ENST00000467733.1_1_3:156262080-156272878:-|nuORF;ENSG00000114850|ENST00000265044|SSR3;ENST00000464138.1_1_3:156266623-156266755:-|nuORF;nc|ENSG00000114850|Q9UNL2-2|SSR3	ENST00000498205.5_1_3:156260994-156266845:-|nuORF	ENST00000498205.5_1_3:156260994-156266845:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1561889648438	2	519.237655	1036.46076	-0.40444	-0.00021	-1.4534	-0.00075464	-1.8578	-0.00096464	519.2361164455132	42.367	0.30361	42.367	42.233	42.537	0					7	5	2	0	0	0	0.74412	1	14743	14743		10.074	8.0142	1	746140			46703	3249	34015	34285	45624	45624					-0.05601442715988014
SEADRYSDY	9	Unmodified	_SEADRYSDY_					0	0	0		ENSG00000237136|ENST00000438731|C4orf51	ENSG00000237136|ENST00000438731|C4orf51	ENSG00000237136|ENST00000438731|C4orf51	MSMS	A375_MHC_IP_R1	1	553.2279052734375	2	553.225268	1104.43598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.081	1	63.081	62.581	63.581	0								0	0	0	0.15486	1	22793	22793		12.532	1.4171	1				46704	9755	34016	34286	45625	45625					-0.11205799317713172
SEADVAQQF	9	Unmodified	_SEADVAQQF_					0	0	0		ENSG00000126216|ENST00000261965|TUBGCP3;nc|ENSG00000126216|Q96CW5-2|TUBGCP3;nc|ENSG00000126216|Q96CW5-3|TUBGCP3	ENSG00000126216|ENST00000261965|TUBGCP3	ENSG00000126216|ENST00000261965|TUBGCP3	MULTI-MSMS	A375_MHC_IP_R2	2	498.1268615722656	2	497.727446	993.44034	-0.89877	-0.00044734	0.38671	0.00019248	-0.51205	-0.00025486	497.7275135965908	52.289	0.50506	53.041	52.78	53.285	0.75225					16	9	2	0	0	0	0.14922	1	19730	19730		41.84	1.8823	1	2050100			46705	4029	34017	34287	45626	45626					-0.05664290104141401
SEAEGNQVYF	10	Unmodified	_SEAEGNQVYF_					0	0	0		ENSG00000107554|ENST00000324109|DNMBP;nc|ENSG00000107554|Q6XZF7-2|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	MULTI-SECPEP	A375_MHC_IP_R1	1	572.66943359375	2	572.251286	1142.48802	-0.3811	-0.00021808	0.1795	0.00010272	-0.2016	-0.00011536	572.2512562296315	65.559	0.76569	65.559	65.206	65.972	0					37	14	4	0	0	0	0.85226	1	23845	23845		20.454	20.454	1	5813700			46706	2742	34018	34288	45627	45627					-0.07752635903943883
SEAEGRGRCGT	11	Unmodified	_SEAEGRGRCGT_					0	0	0		ENST00000377797.7_1_5:149740720-149743729:+|nuORF	ENST00000377797.7_1_5:149740720-149743729:+|nuORF	ENST00000377797.7_1_5:149740720-149743729:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	562.6798706054688	2	561.751461	1121.48837	-0.65306	-0.00036686	-0.73314	-0.00041184	-1.3862	-0.0007787	561.7506707374125	32.411	0.70901	32.411	32.127	32.836	0					23	13	3	0	0	0	0.63737	2	10443	10443;10483		20.415	2.2682	1	2512700			46707	11302	34019	34289	45628;45629	45628					-0.06751539455740385
SEAEGRGRCGT	11	Unmodified	_SEAEGRGRCGT_					0	0	0		ENST00000377797.7_1_5:149740720-149743729:+|nuORF	ENST00000377797.7_1_5:149740720-149743729:+|nuORF	ENST00000377797.7_1_5:149740720-149743729:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	562.6800537109375	2	561.751461	1121.48837	-0.5998	-0.00033694	-0.70522	-0.00039616	-1.305	-0.0007331	561.7505503827331	31.748	0.55672	32.484	32.249	32.806	0.73691					24	10	4	0	0	0	0.63737	1	11190	11190		20.415	7.883	1	3699300			46708	11302	34019	34289	45630	45630					-0.06751539455740385
SEAEIRVFL	9	Unmodified	_SEAEIRVFL_					0	0	0		ENSG00000104976|ENST00000221573|SNAPC2	ENSG00000104976|ENST00000221573|SNAPC2	ENSG00000104976|ENST00000221573|SNAPC2	MULTI-SECPEP	A375_MHC_IP_R1	1	532.0817260742188	2	532.292756	1062.57096	-0.54744	-0.0002914	1.5554	0.00082792	1.0079	0.00053652	532.2943349307665	88.341	1.171	88.341	87.949	89.12	0					45	22	3	0	0	0	0.27114	1	32459	32459		45.74	27.594	1	3558700			46709	2561	34020	34290	45631	45631					0.04217725614716983
SEAEMRLFY	9	Unmodified	_SEAEMRLFY_					0	0	0		DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant;ENSG00000150990|ENST00000308736|DHX37	DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant	DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	573.6685791015625	2	573.268424	1144.5223	-0.22603	-0.00012958	0.21401	0.00012268	-0.012024	-6.8928E-06	573.268470793632	79.679	0.513	79.679	79.47	79.983	0					16	9	2	0	0	0	0.16945	1	29083	29083		40.239	22.093	1	2173100			46710	741	34021	34291	45632	45632					-0.04418511016683624
SEAEMRLFY	9	Oxidation (M)	_SEAEM(Oxidation (M))RLFY_		SEAEM(1)RLFY		SEAEM(42)RLFY	0	0	1		DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant;ENSG00000150990|ENST00000308736|DHX37	DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant	DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	581.6802368164062	2	581.265881	1160.51721	-0.10378	-6.0326E-05	0.11408	6.631E-05	0.010294	5.9835E-06	581.2659971366455	56.148	0.70749	56.148	55.841	56.548	0					24	13	3	0	0	0	0.40377	1	20045	20045		41.956	17.935	1	2305800			46711	741	34021	34292	45633	45633		3			-0.05662814879315192
SEAEMRLFY	9	Oxidation (M)	_SEAEM(Oxidation (M))RLFY_		SEAEM(1)RLFY		SEAEM(40)RLFY	0	0	1		DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant;ENSG00000150990|ENST00000308736|DHX37	DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant	DHX37|p.R783Afs*8|1|0.22|ENSG00000150990|chr12:124956797-124956797|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	581.6658935546875	2	581.265881	1160.51721	-0.42503	-0.00024706	-0.30809	-0.00017909	-0.73313	-0.00042614	581.2659502643384	55.434	0.81277	56.185	55.881	56.694	0.75075					28	15	3	0	0	0	0.16945	3	20948	20948;20960;20962		40.239	22.093	1	2246600			46712	741	34021	34292	45634;45635;45636	45634		3			-0.05662814879315192
SEAEQTLRF	9	Unmodified	_SEAEQTLRF_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	A375_MHC_IP_R1	1	541.1692504882812	2	540.769645	1079.52474	-0.16709	-9.0357E-05	-0.48708	-0.0002634	-0.65417	-0.00035376	540.7692192045489	49.274	0.86209	49.274	48.983	49.845	0					50	16	5	0	0	0	0.0098859	2	17376	17340;17376		117.76	63.928	1	21400000			46713	4099;14587;14586	34022	34293	45637;45638	45638					-0.011843392873743142
SEAEQTLRF	9	Unmodified	_SEAEQTLRF_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	A375_MHC_IP_R2	2	540.6774291992188	2	540.769645	1079.52474	-0.84617	-0.00045758	0.022023	1.1909E-05	-0.82414	-0.00044567	540.7695474501792	48.472	0.71004	49.23	48.929	49.639	0.75737					46	13	4	0	0	0	0.0045836	1	18199	18199		135.86	53.334	1	30051000			46714	4099;14587;14586	34022	34293	45639	45639					-0.011843392873743142
SEAEVAELY	9	Unmodified	_SEAEVAELY_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	MULTI-MSMS	A375_MHC_IP_R2	2	506.1368408203125	2	505.73748	1009.46041	-0.70897	-0.00035855	-0.34811	-0.00017605	-1.0571	-0.0005346	505.737212405068	27.577	1.269	28.256	27.741	29.01	0.67857					45	24	4	0	0	0	0.6898	1	9442	9442		7.9102	0.62092	1	6740500			46715	1078	34023	34294	45640	45640					-0.04394539164195521
SEAFVIKGL	9	Unmodified	_SEAFVIKGL_					0	0	0		ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A	ENSG00000068724|ENST00000319190|TTC7A	ENSG00000068724|ENST00000319190|TTC7A	MULTI-MSMS	A375_MHC_IP_R1	1	482.67889404296875	2	482.279118	962.543683	-0.22953	-0.0001107	-0.021605	-1.042E-05	-0.25113	-0.00012112	482.2790734270843	79.136	1.2785	79.136	78.807	80.086	0					70	24	5	0	0	0	0.2487	1	29041	29041		34.402	0	1	64634000			46716	1463	34024	34295	45641	45641					0.06091242074330694
SEAGFYLARGS	11	Unmodified	_SEAGFYLARGS_					0	0	0		ENST00000529051.5_1_11:124824106-124824726:+|nuORF	ENST00000529051.5_1_11:124824106-124824726:+|nuORF	ENST00000529051.5_1_11:124824106-124824726:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	386.92431640625	3	386.524372	1156.55129	-0.56185	-0.00021717	-0.35822	-0.00013846	-0.92008	-0.00035563	386.52449709291864	26.043	0.50851	26.703	26.449	26.957	0.65992					23	9	3	0	0	0	0.91844	1	8767	8767		21.241	8.3854	1	7092400			46717	13124	34025	34296	45642	45642					-0.020726503960759146
SEAGGLKQEI	10	Unmodified	_SEAGGLKQEI_					0	0	0		ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	A375_MHC_IP_R2	2	517.7053833007812	2	516.272021	1030.52949	-0.9418	-0.00048623	0.35636	0.00018398	-0.58544	-0.00030225	516.2720835645702	49.028	1.0654	49.785	49.282	50.348	0.75736					53	20	4	0	0	0	0.62015	1	18455	18455		19.362	1.2156	1	36804000			46718	3509	34026	34297	45643	45643					0.01544544855391905
SEAGGRPEVP	10	Unmodified	_SEAGGRPEVP_					0	0	0			REV__ENST00000467866.1_1_22:39898376-39900312:+|nuORF	REV__ENST00000467866.1_1_22:39898376-39900312:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	499.982666015625	2	499.748713	997.482873	-0.50598	-0.00025286	-0.034293	-1.7138E-05	-0.54027	-0.00027	499.7487072251164	33.049	0.25214	33.049	32.938	33.19	0					6	4	2	0	0	0	0.92514	1	10729	10729		2.4985	0	1	1207600	+		46719	25063	34027	34298	45644	45644					-0.015968949759098905
SEAGPNQTF	9	Unmodified	_SEAGPNQTF_					0	0	0		nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-MSMS	A375_MHC_IP_R2	2	476.67645263671875	2	475.714339	949.414125	-0.75909	-0.00036111	0.17654	8.3984E-05	-0.58255	-0.00027713	475.71437921994806	35.403	0.75864	36.166	35.829	36.587	0.76338					41	14	4	0	0	0	0.11629	2	12857	12857;12976		47.749	18.667	1	20821000			46720	6685	34028	34299	45645;45646	45645					-0.06260559275608557
SEAGTGFCF	9	Carbamidomethyl (C)	_SEAGTGFC(Carbamidomethyl (C))F_	SEAGTGFC(1)F		SEAGTGFC(64)F		0	1	0		ENSG00000243147|ENST00000296102|MRPL33	ENSG00000243147|ENST00000296102|MRPL33	ENSG00000243147|ENST00000296102|MRPL33	MULTI-MSMS	A375_MHC_IP_R1	1	975.3634643554688	1	975.387658	974.380382	0.23933	0.00023344	-0.73673	-0.0007186	-0.4974	-0.00048516	975.3868549314539	82.747	0.45364	82.747	82.571	83.024	0					14	8	2	0	0	0	0.050162	1	30344	30344		64.236	35.749	1	2555400			46721	9805	34029	34300	45647	45647	49				-0.1078330403901191
SEAGTGFCF	9	Carbamidomethyl (C)	_SEAGTGFC(Carbamidomethyl (C))F_					0	1	0		ENSG00000243147|ENST00000296102|MRPL33	ENSG00000243147|ENST00000296102|MRPL33	ENSG00000243147|ENST00000296102|MRPL33	MULTI-MATCH	A375_MHC_IP_R2	2		1	975.387658	974.380382	-0.080576	-7.8593E-05	-0.40199	-0.00039209	-0.48256	-0.00047069	975.3869371543419	82.055	0.45859	82.798	82.533	82.992	0.74294	0.025515	0.00017452	NaN	64.236	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2083100			46722	9805	34029	34300			49				-0.1078330403901191
SEAIQEQTASL	11	Unmodified	_SEAIQEQTASL_					0	0	0			REV__ENSG00000161638|ENST00000293379|ITGA5	REV__ENSG00000161638|ENST00000293379|ITGA5	MULTI-SECPEP	A375_MHC_IP_R1	1	393.6072998046875	3	392.862942	1175.567	0.36448	0.00014319	-0.86521	-0.00033991	-0.50074	-0.00019672	392.86250009404216	21.58	0.45676	21.58	21.352	21.808	0					13	8	2	0	0	0	0.99133	1	5721	5721		3.5927	2.3778	1	1317400	+		46723	20215	34030	34301	45648	45648					-0.013764086696710365
SEAKTPIKW	9	Unmodified	_SEAKTPIKW_					0	0	0		ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;ENST00000548709.1_1_12:56490921-56492754:+|nuORF;nc|ENSG00000065361|P21860-5|ERBB3	ENSG00000065361|ENST00000267101|ERBB3	ENSG00000065361|ENST00000267101|ERBB3	MULTI-SECPEP	A375_MHC_IP_R1	1	354.2659606933594	3	353.865958	1058.57605	-0.11968	-4.2352E-05	-0.0057392	-2.0309E-06	-0.12542	-4.4383E-05	353.86589923588355	34.323	0.70774	34.323	34.052	34.759	0					33	13	3	0	0	0	0.44554	1	11284	11284		34.222	22.047	1	27910000			46724	1379	34031	34302	45649	45649					0.04910029477309763
SEAKTPIKW	9	Unmodified	_SEAKTPIKW_					0	0	0		ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;ENST00000548709.1_1_12:56490921-56492754:+|nuORF;nc|ENSG00000065361|P21860-5|ERBB3	ENSG00000065361|ENST00000267101|ERBB3	ENSG00000065361|ENST00000267101|ERBB3	MULTI-SECPEP	A375_MHC_IP_R1	1	530.695068359375	2	530.295299	1058.57605	-0.64065	-0.00033973	0.15527	8.234E-05	-0.48538	-0.00025739	530.2953373802467	34.342	0.55478	34.342	34.103	34.657	0					24	10	3	0	0	0	0.1732	1	11305	11305		70.929	38.623	1	11620000			46725	1379	34031	34302	45650	45650					0.04910029477309763
SEAKTPIKW	9	Unmodified	_SEAKTPIKW_					0	0	0		ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;ENST00000548709.1_1_12:56490921-56492754:+|nuORF;nc|ENSG00000065361|P21860-5|ERBB3	ENSG00000065361|ENST00000267101|ERBB3	ENSG00000065361|ENST00000267101|ERBB3	MULTI-MSMS	A375_MHC_IP_R2	2	354.265869140625	3	353.865958	1058.57605	-0.65379	-0.00023136	-0.0016409	-5.8066E-07	-0.65544	-0.00023194	353.8658853428219	33.519	0.81116	34.271	33.942	34.753	0.75225					36	15	4	0	0	0	0.11629	2	11981	11938;11981		43.982	31.109	1	34146000			46726	1379	34031	34302	45651;45652	45652					0.04910029477309763
SEAKTPIKW	9	Unmodified	_SEAKTPIKW_					0	0	0		ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;ENST00000548709.1_1_12:56490921-56492754:+|nuORF;nc|ENSG00000065361|P21860-5|ERBB3	ENSG00000065361|ENST00000267101|ERBB3	ENSG00000065361|ENST00000267101|ERBB3	MULTI-SECPEP	A375_MHC_IP_R2	2	530.6949462890625	2	530.295299	1058.57605	-1.0388	-0.00055086	0.058398	3.0968E-05	-0.98038	-0.00051989	530.2951336371815	33.507	0.6079	34.259	33.942	34.55	0.75225					27	11	3	0	0	0	0.49701	1	12018	12018		47.594	31.747	1	12444000			46727	1379	34031	34302	45653	45653					0.04910029477309763
SEALEAARI	9	Unmodified	_SEALEAARI_					0	0	0		ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF	ENSG00000165496|ENST00000298283|RPL10L	ENSG00000165496|ENST00000298283|RPL10L	MULTI-SECPEP	A375_MHC_IP_R2	2	480.6611022949219	2	480.261456	958.50836	-0.49485	-0.00023766	-0.45786	-0.00021989	-0.95271	-0.00045755	480.2611434794944	42.572	0.4069	43.344	43.116	43.523	0.7724					13	7	2	0	0	0	0.10362	1	15858	15858		72.968	10.395	1	3240300			46728	5679	34032	34303	45654	45654					0.027445795465155243
SEALEPLNEPK	11	Unmodified	_SEALEPLNEPK_					0	0	0			REV__ENSG00000138411|ENST00000644978|HECW2	REV__ENSG00000138411|ENST00000644978|HECW2	MULTI-SECPEP	A375_MHC_IP_R1	1	614.216064453125	2	613.816793	1225.61903	-0.7284	-0.0004471	-0.11542	-7.0846E-05	-0.84382	-0.00051795	613.816774994749	41.477	0.45901	41.477	41.215	41.674	0					15	8	2	0	0	0	0.47836	1	14307	14307		49.554	9.6046	1	12582000	+		46729	19094	34033	34304	45655	45655					0.015247547440822018
SEALEPLNEPK	11	Unmodified	_SEALEPLNEPK_					0	0	0			REV__ENSG00000138411|ENST00000644978|HECW2	REV__ENSG00000138411|ENST00000644978|HECW2	MULTI-SECPEP	A375_MHC_IP_R2	2	614.2167358398438	2	613.816793	1225.61903	-0.74528	-0.00045746	0.10537	6.4676E-05	-0.63991	-0.00039279	613.8169175173211	40.74	0.76267	41.515	40.98	41.743	0.77451					18	14	2	0	0	0	0.71172	1	15098	15098		31.268	1.4278	1	16360000	+		46730	19094	34033	34304	45656	45656					0.015247547440822018
SEALGDNVKQY	11	Unmodified	_SEALGDNVKQY_					0	0	0		ENSG00000152382|ENST00000367874|TADA1	ENSG00000152382|ENST00000367874|TADA1	ENSG00000152382|ENST00000367874|TADA1	MULTI-MSMS	A375_MHC_IP_R1	1	612.698486328125	2	612.298767	1222.58298	-0.30275	-0.00018538	0.015423	9.4436E-06	-0.28733	-0.00017593	612.2987189920507	33.508	0.40693	33.508	33.291	33.698	0					22	7	4	0	0	0	4.1174E-54	1	10943	10943		268.64	206.07	1	9904800			46731	5961	34034	34305	45657	45657					-0.019407024327620093
SEALGDNVKQY	11	Unmodified	_SEALGDNVKQY_					0	0	0		ENSG00000152382|ENST00000367874|TADA1	ENSG00000152382|ENST00000367874|TADA1	ENSG00000152382|ENST00000367874|TADA1	MULTI-MSMS	A375_MHC_IP_R2	2	612.698486328125	2	612.298767	1222.58298	-0.60707	-0.00037171	0.060512	3.7051E-05	-0.54656	-0.00033466	612.2988213485867	32.888	0.5089	33.625	33.367	33.876	0.73692					23	9	4	0	0	0	2.9983E-34	1	11732	11732		246.87	191.37	1	8715300			46732	5961	34034	34305	45658	45658					-0.019407024327620093
SEALPSRVSF	10	Unmodified	_SEALPSRVSF_					0	0	0		ENST00000455773.7_1_10:12238257-12240732:+|nuORF	ENST00000455773.7_1_10:12238257-12240732:+|nuORF	ENST00000455773.7_1_10:12238257-12240732:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	547.1873168945312	2	546.787838	1091.56112	-0.54074	-0.00029567	-0.20985	-0.00011475	-0.7506	-0.00041042	546.7877305676725	60.439	0.66113	60.439	60.21	60.871	0					18	12	2	0	0	0	0.10905	1	21762	21762		84.522	52.217	1	7826500			46733	12118	34035	34306	45659	45659					0.01900537609321873
SEALPSRVSF	10	Unmodified	_SEALPSRVSF_					0	0	0		ENST00000455773.7_1_10:12238257-12240732:+|nuORF	ENST00000455773.7_1_10:12238257-12240732:+|nuORF	ENST00000455773.7_1_10:12238257-12240732:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	546.1373291015625	2	546.787838	1091.56112	-1.1647	-0.00063686	0.12677	6.9314E-05	-1.038	-0.00056755	546.7879104321958	59.662	0.55592	60.409	60.148	60.704	0.74714					19	10	2	0	0	0	0.35635	1	22588	22588		51.488	28.752	1	7664000			46734	12118	34035	34306	45660	45660					0.01900537609321873
SEALQFYL	8	Unmodified	_SEALQFYL_					0	0	0		nc|ENSG00000187790|Q8IYD8-3|FANCM;ENSG00000187790|ENST00000267430|FANCM	nc|ENSG00000187790|Q8IYD8-3|FANCM	nc|ENSG00000187790|Q8IYD8-3|FANCM	MSMS	A375_MHC_IP_R2	2	485.6839599609375	2	485.74765	969.480748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.416	1	99.176	98.676	99.676	0.75977								0	0	0	0.16876	1	37338	37338		30.225	7.7722	1				46735	8857	34036	34307	45661	45661					-0.00521323713712718
SEALTELGY	9	Unmodified	_SEALTELGY_					0	0	0		nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;ENST00000582352.1_1_17:18236273-18236588:-|nuORF;nc|ENSG00000176974|P34896-4|SHMT1	nc|ENSG00000176974|P34896-2|SHMT1	nc|ENSG00000176974|P34896-2|SHMT1	MULTI-SECPEP	A375_MHC_IP_R1	1	981.8807373046875	1	982.472768	981.465492	0.050123	4.9244E-05	-0.59321	-0.00058281	-0.54309	-0.00053357	982.4719067886425	80.923	0.35596	80.923	80.744	81.1	0					11	6	2	0	0	0	0.47368	1	29503	29503		34.102	13.649	1	2026100			46736	8047	34037	34308	45662	45662					-0.025982353015592707
SEANSLGVTWH	11	Unmodified	_SEANSLGVTWH_					0	0	0		ENST00000561483.5_1_15:84323016-84694242:+|nuORF;nc|ENSG00000156218|P82987-2|ADAMTSL3;ENSG00000156218|ENST00000286744|ADAMTSL3	ENST00000561483.5_1_15:84323016-84694242:+|nuORF	ENST00000561483.5_1_15:84323016-84694242:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	401.5916748046875	3	400.859643	1199.5571	-0.27598	-0.00011063	-3.3063	-0.0013253	-3.5822	-0.001436	401.1918727684891	31.479	0.40508	31.479	31.262	31.667	0					22	7	4	0	0	0	0.98856	1	10118	10118		2.4348	0.15201	1	3989400			46737	6181	34038	34309	45663	45663					-0.03469551884381872
SEANVQRLY	9	Unmodified	_SEANVQRLY_					0	0	0		ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	MULTI-MSMS	A375_MHC_IP_R1	1	540.2037353515625	2	540.277638	1078.54072	-0.7194	-0.00038868	0.0023579	1.2739E-06	-0.71704	-0.0003874	540.2775058448486	36.196	0.71234	36.196	35.982	36.695	0					18	13	2	0	0	0	0.0090297	3	12085	12085;12132;12150		99.755	59.798	1	3788500			46738	3679	34039	34310	45664;45665;45666	45664					0.00459366949530704
SEANVQRLY	9	Unmodified	_SEANVQRLY_					0	0	0		ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	MULTI-MSMS	A375_MHC_IP_R2	2	540.1888427734375	2	540.277638	1078.54072	-1.0719	-0.00057911	0.10811	5.8411E-05	-0.96376	-0.0005207	540.2775596187618	35.409	0.65956	36.173	36.03	36.69	0.76338					25	12	3	0	0	0	0.0090297	2	12834	12819;12834		99.755	59.798	1	3739900			46739	3679	34039	34310	45667;45668	45668					0.00459366949530704
SEAPAFGW	8	Unmodified	_SEAPAFGW_					0	0	0		ENST00000424000.6_1_2:178977216-178988379:+|nuORF	ENST00000424000.6_1_2:178977216-178988379:+|nuORF	ENST00000424000.6_1_2:178977216-178988379:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	432.6152648925781	2	432.697961	863.381368	-0.31853	-0.00013783	0.35989	0.00015572	0.041356	1.7895E-05	432.6980343116538	46.84	0.81824	46.84	46.444	47.263	0					32	15	3	0	0	0	0.77702	1	16587	16587		5.7604	0	1	9484500			46740	11766	34040	34311	45669	45669					-0.055787216078101665
SEAPARQGF	9	Unmodified	_SEAPARQGF_					0	0	0		nc|ENSG00000164306|Q96LW4-2|PRIMPOL;ENSG00000164306|ENST00000314970|PRIMPOL	nc|ENSG00000164306|Q96LW4-2|PRIMPOL	nc|ENSG00000164306|Q96LW4-2|PRIMPOL	MULTI-MSMS	A375_MHC_IP_R1	1	482.1758728027344	2	481.738148	961.461744	-0.59321	-0.00028577	-0.61518	-0.00029635	-1.2084	-0.00058212	481.7380246681535	24.066	0.35576	24.066	23.889	24.245	0					15	6	4	0	0	0	0.17328	1	6740	6740		39.957	19.086	1	6820500			46741	6820	34041	34312	45670	45670					-0.020528602847548427
SEAPGRFAQ	9	Unmodified	_SEAPGRFAQ_					0	0	0		ENST00000340134.4_1_11:1769161-1771748:-|nuORF	ENST00000340134.4_1_11:1769161-1771748:-|nuORF	ENST00000340134.4_1_11:1769161-1771748:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	482.1376953125	2	481.738148	961.461744	-0.59321	-0.00028577	-0.61518	-0.00029635	-1.2084	-0.00058212	481.7380246681535	24.066	0.35576	24.066	23.889	24.245	0					15	6	4	0	0	0	0.4867	1	6804	6804		20.454	0	1	6820500			46742	10853	34042	34313	45671	45671					-0.020528602847662114
SEAPLFIY	8	Unmodified	_SEAPLFIY_					0	0	0		nc|ENSG00000126768|O60830-2|TIMM17B	nc|ENSG00000126768|O60830-2|TIMM17B	nc|ENSG00000126768|O60830-2|TIMM17B	MSMS	A375_MHC_IP_R1	1	470.1522521972656	2	470.244744	938.474934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.612	1	41.612	41.112	42.112	0								0	0	0	0.16876	1	14379	14379		34.187	3.5508	1				46743	14584	34043	34314	45672	45672					0.0032357777459992576
SEAPNEKLF	9	Unmodified	_SEAPNEKLF_					0	0	0		ENST00000594525.5_1_19:48248816-48255954:+|nuORF;ENST00000598681.5_1_19:48248882-48259836:+|nuORF;ENSG00000105373|ENST00000246802|NOP53	ENST00000594525.5_1_19:48248816-48255954:+|nuORF	ENST00000594525.5_1_19:48248816-48255954:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	518.2156372070312	2	517.761289	1033.50803	-0.61017	-0.00031592	0.81728	0.00042315	0.20711	0.00010723	517.7619645956755	47.133	0.41409	47.133	46.952	47.366	0					13	7	2	0	0	0	0.41879	1	16575	16575		23.79	8.5413	1	2300700			46744	2595	34044	34315	45673	45673					-0.007388401733351202
SEAPNEKLF	9	Unmodified	_SEAPNEKLF_					0	0	0		ENST00000594525.5_1_19:48248816-48255954:+|nuORF;ENST00000598681.5_1_19:48248882-48259836:+|nuORF;ENSG00000105373|ENST00000246802|NOP53	ENST00000594525.5_1_19:48248816-48255954:+|nuORF	ENST00000594525.5_1_19:48248816-48255954:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	517.7050170898438	2	517.761289	1033.50803	-0.61645	-0.00031917	0.9798	0.0005073	0.36335	0.00018813	517.7618560804917	46.353	0.56036	47.118	46.906	47.466	0.76519					16	10	2	0	0	0	0.59266	1	17355	17355		15.248	0.41021	1	1815800			46745	2595	34044	34315	45674	45674					-0.007388401733351202
SEAPPSARYQP	11	Unmodified	_SEAPPSARYQP_					0	0	0			REV__nc|ENSG00000170921|Q9HCD6|TANC2	REV__nc|ENSG00000170921|Q9HCD6|TANC2	MULTI-SECPEP	A375_MHC_IP_R1	1	401.9314270019531	3	401.531527	1201.57275	-0.41756	-0.00016766	0.3488	0.00014005	-0.068761	-2.761E-05	401.53153370332626	28.212	0.80851	28.212	27.987	28.795	0					25	15	2	0	0	0	0.9574	1	8711	8711		8.2864	0	1	4419800	+		46746	21033	34045	34316	45675	45675					-0.019972653673448804
SEAPSQPSL	9	Unmodified	_SEAPSQPSL_					0	0	0		IGHMBP2|p.P812Lfs*19|1|0.86|ENSG00000132740|chr11:68936912-68936912|C/-|frameshift_variant;ENSG00000132740|ENST00000255078|IGHMBP2	IGHMBP2|p.P812Lfs*19|1|0.86|ENSG00000132740|chr11:68936912-68936912|C/-|frameshift_variant	IGHMBP2|p.P812Lfs*19|1|0.86|ENSG00000132740|chr11:68936912-68936912|C/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	458.14801025390625	2	458.224539	914.434526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.372	1	41.146	40.646	41.646	0.77451								0	0	0	0.032377	1	14948	14948		65.235	12.967	1				46747	4445	34046	34317	45676	45676					-0.026113886158100286
SEAPWGLARAV	11	Unmodified	_SEAPWGLARAV_					0	0	0		ENST00000422840.6_1_16:74486442-74486568:-|nuORF	ENST00000422840.6_1_16:74486442-74486568:-|nuORF	ENST00000422840.6_1_16:74486442-74486568:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	386.60845947265625	3	386.208495	1155.60366	-0.16053	-6.1996E-05	0.634	0.00024486	0.47348	0.00018286	386.2085621559482	30.901	0.45362	31.62	31.367	31.821	0.71857					20	8	3	0	0	0	0.72651	1	10891	10891		12.228	0.052842	1	4564800			46748	11752	34047	34318	45677	45677					0.03207932737564079
SEAQEGLQKF	10	Unmodified	_SEAQEGLQKF_					0	0	0		ENST00000465315.1_1_2:131099168-131099453:-|nuORF;ENSG00000136710|ENST00000259229|CCDC115;nc|ENSG00000136710|Q96NT0-2|CCDC115	ENST00000465315.1_1_2:131099168-131099453:-|nuORF	ENST00000465315.1_1_2:131099168-131099453:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	568.6204223632812	2	568.782753	1135.55095	-0.50825	-0.00028909	0.29619	0.00016847	-0.21206	-0.00012062	569.2839170947153	36.31	0.66299	37.081	36.85	37.513	0.7709					14	12	2	0	0	0	0.70461	1	13190	13190		41.956	21.541	1	2252800			46749	12239	34048	34319	45678	45678					-0.011400701159118398
SEAQQPASHPV	11	Unmodified	_SEAQQPASHPV_					0	0	0		ENSG00000079432|ENST00000681038|CIC;nc|ENSG00000079432|Q96RK0-2|CIC;CIC|p.V442Gfs*2|1|0.14|ENSG00000079432|chr19:42289371-42289393|TCATCTGTGAGGAGGAAGGGGAT/-|frameshift_variant	ENSG00000079432|ENST00000681038|CIC	ENSG00000079432|ENST00000681038|CIC	MULTI-SECPEP	A375_MHC_IP_R2	2	384.5875549316406	3	384.18776	1149.54145	-0.4425	-0.00017	0.58198	0.00022359	0.13948	5.3588E-05	384.18775347396445	20.598	0.75956	21.208	20.958	21.717	0.61029					21	14	2	0	0	0	0.98524	1	6452	6452		3.5927	0	1	1000800			46750	1696	34049	34320	45679	45679					-0.027338384014456096
SEAQVQKFL	9	Unmodified	_SEAQVQKFL_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-SECPEP	A375_MHC_IP_R1	1	525.66650390625	2	525.284931	1048.55531	-0.3547	-0.00018632	-0.72299	-0.00037978	-1.0777	-0.0005661	525.2847527601734	54.389	1.3167	54.389	53.809	55.126	0					42	25	2	0	0	0	6.7415E-06	1	19417	19417		193.29	118.37	1	55024000			46751	3490	34050	34321	45680	45680					0.03297439097673305
SEAQVQKFL	9	Unmodified	_SEAQVQKFL_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	A375_MHC_IP_R2	2	525.772216796875	2	525.284931	1048.55531	-1.0024	-0.00052655	-0.71278	-0.00037441	-1.7152	-0.00090096	525.2848908396567	53.561	1.5803	54.312	53.842	55.422	0.75105					72	30	4	0	0	0	0.60101	1	20097	20097		14.838	2.5976	1	48334000			46752	3490	34050	34321	45681	45681					0.03297439097673305
SEASESFGYY	10	Unmodified	_SEASESFGYY_					0	0	0			REV__ENSG00000197859|ENST00000651351|ADAMTSL2	REV__ENSG00000197859|ENST00000651351|ADAMTSL2	MULTI-SECPEP	A375_MHC_IP_R1	1	571.0073852539062	2	570.230019	1138.44548	-0.4378	-0.00024964	0.15931	9.0845E-05	-0.27848	-0.0001588	570.23024305786	65.716	0.56034	65.716	65.411	65.972	0					18	10	2	0	0	0	0.91556	1	23718	23718		14.838	3.198	1	1286300	+		46753	22325	34051	34322	45682	45682					-0.11820031032175393
SEASLGPLAY	10	Unmodified	_SEASLGPLAY_					0	0	0		nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2	nc|ENSG00000139613|Q8TAQ2-2|SMARCC2	nc|ENSG00000139613|Q8TAQ2-2|SMARCC2	MULTI-MSMS	A375_MHC_IP_R1	1	504.6558532714844	2	504.25584	1006.49713	-0.2566	-0.00012939	-0.11608	-5.8532E-05	-0.37267	-0.00018792	504.25571910341813	88.989	0.86473	88.989	88.51	89.375	0					34	16	3	0	0	0	0.0092734	1	32620	32620		108	66.157	1	7091100			46754	5089	34052	34323	45683	45683					-0.005862425476266253
SEASLGPLAY	10	Unmodified	_SEASLGPLAY_					0	0	0		nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2	nc|ENSG00000139613|Q8TAQ2-2|SMARCC2	nc|ENSG00000139613|Q8TAQ2-2|SMARCC2	MULTI-MSMS	A375_MHC_IP_R2	2	504.6556091308594	2	504.25584	1006.49713	-0.61467	-0.00030995	0.11306	5.7009E-05	-0.50162	-0.00025294	504.2558934158957	88.202	0.91156	88.934	88.57	89.482	0.7318					45	17	4	0	0	0	0.011608	1	33523	33523		115.69	73.852	1	7690700			46755	5089	34052	34323	45684	45684					-0.005862425476266253
SEASQGFRF	9	Unmodified	_SEASQGFRF_					0	0	0		ENSG00000136536|ENST00000409175|MARCHF7;nc|ENSG00000136536|Q9H992-2|MARCHF7	ENSG00000136536|ENST00000409175|MARCHF7	ENSG00000136536|ENST00000409175|MARCHF7	MULTI-MSMS	A375_MHC_IP_R1	1	515.2080078125	2	514.743431	1027.47231	-0.39083	-0.00020118	-0.1961	-0.00010094	-0.58693	-0.00030212	514.7432696228931	50.02	0.81538	50.02	49.49	50.305	0					29	15	3	0	0	0	0.0090297	3	17720	17675;17720;17779		99.755	57.916	1	5484000			46756	4797	34053	34324	45685;45686;45687	45686					-0.04032877630334042
SEASQGFRF	9	Unmodified	_SEASQGFRF_					0	0	0		ENSG00000136536|ENST00000409175|MARCHF7;nc|ENSG00000136536|Q9H992-2|MARCHF7	ENSG00000136536|ENST00000409175|MARCHF7	ENSG00000136536|ENST00000409175|MARCHF7	MULTI-MSMS	A375_MHC_IP_R2	2	515.1434326171875	2	514.743431	1027.47231	-0.97527	-0.00050201	-0.18953	-9.756E-05	-1.1648	-0.00059957	514.7434766863203	49.196	0.65861	49.953	49.588	50.247	0.75737					26	12	3	0	0	0	0.015356	4	18454	18401;18454;18528;18563		89.401	49.371	1	4651000			46757	4797	34053	34324	45688;45689;45690;45691	45689					-0.04032877630334042
SEASSSVSI	9	Unmodified	_SEASSSVSI_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-SECPEP	A375_MHC_IP_R2	2	866.0411376953125	1	866.410168	865.402892	-0.75201	-0.00065155	0.063974	5.5428E-05	-0.68803	-0.00059612	866.4104710618168	39.256	0.307	40.03	39.76	40.067	0.77451					8	5	2	0	0	0	0.20567	1	14408	14408		46.021	19.137	1	1283100			46758	3145	34054	34325	45692	45692					-0.0351938136973331
SEAVIGYLSI	10	Unmodified	_SEAVIGYLSI_					0	0	0			REV__LPL|p.T369I|1|0.28|ENSG00000175445|chr8:19959347-19959347|C/T|missense_variant	REV__LPL|p.T369I|1|0.28|ENSG00000175445|chr8:19959347-19959347|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	526.6869506835938	2	526.28714	1050.55973	-0.70877	-0.00037302	-0.50289	-0.00026466	-1.2117	-0.00063768	526.2868143950117	71.994	0.70812	72.729	72.414	73.122	0.73421					30	13	3	0	0	0	0.24752	1	27264	27264		45.7	0	1	12951000	+		46759	26938	34055	34326	45693	45693					0.036469035205982436
SEAVVEYVF	9	Unmodified	_SEAVVEYVF_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-SECPEP	A375_MHC_IP_R1	1	522.1543579101562	2	521.758215	1041.50188	-0.31069	-0.0001621	-1.1415	-0.00059556	-1.4521	-0.00075767	521.7570134507705	109.96	0.76382	109.96	109.42	110.19	0					21	14	2	0	0	0	0.16229	1	40251	40251		32.305	15.363	1	1858600			46760	9124	34056	34327	45694	45694					-0.017213584048704433
SEAVVEYVF	9	Unmodified	_SEAVVEYVF_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-SECPEP	A375_MHC_IP_R1	1	1043.130859375	1	1042.50915	1041.50188	0.35154	0.00036649	-3.6687	-0.0038247	-3.3172	-0.0034582	1042.5050612165546	109.78	0.66344	109.78	109.42	110.09	0					24	12	3	0	0	0	0.16676	1	40239	40239		49.933	6.1606	1	4935100			46761	9124	34056	34327	45695	45695					-0.017213584048704433
SEAVVEYVF	9	Unmodified	_SEAVVEYVF_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	A375_MHC_IP_R2	2	521.6927490234375	2	521.758215	1041.50188	-0.52376	-0.00027328	-0.21858	-0.00011405	-0.74234	-0.00038732	521.7576209443932	109.07	0.71201	109.82	109.57	110.28	0.74684					23	13	3	0	0	0	0.4867	1	41109	41109		20.454	8.8133	1	1724300			46762	9124	34056	34327	45696	45696					-0.017213584048704433
SEAVVEYVF	9	Unmodified	_SEAVVEYVF_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MATCH	A375_MHC_IP_R2	2		1	1042.50915	1041.50188	0.11561	0.00012052	-4.006	-0.0041763	-3.8904	-0.0040558	1042.5047452427414	108.97	0.71407	109.72	109.37	110.08	0.74684	-0.030899	-0.00021293	NaN	49.933	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3807600			46763	9124	34056	34327							-0.017213584048704433
SEAVYQHLF	9	Unmodified	_SEAVYQHLF_					0	0	0		nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF;ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF	nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF	nc|ENSG00000242802|O43299-2|AP5Z1	MULTI-SECPEP	A375_MHC_IP_R1	1	547.669677734375	2	547.269281	1092.52401	-0.39167	-0.00021435	0.18529	0.0001014	-0.20639	-0.00011295	547.2691057033911	72.476	1.0133	72.476	72.018	73.031	0					49	19	5	0	0	0	0.027983	1	26333	26333		81.89	53.403	1	8058300			46764	9803;12446	34057	34328	45697	45697					-0.018551339364421437
SEAVYQHLF	9	Unmodified	_SEAVYQHLF_					0	0	0		nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF;ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF	nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF	nc|ENSG00000242802|O43299-2|AP5Z1	MULTI-MSMS	A375_MHC_IP_R2	2	547.669189453125	2	547.269281	1092.52401	-1.0932	-0.00059827	0.55543	0.00030397	-0.53776	-0.0002943	547.2693525800519	71.682	0.95995	72.416	72.061	73.021	0.73421					41	18	4	0	0	0	0.0098409	1	27159	27159		115.69	81.59	1	9757600			46765	9803;12446	34057	34328	45698	45698					-0.018551339364421437
SEAWDPRTLQ	10	Unmodified	_SEAWDPRTLQ_					0	0	0		ENSG00000179546|ENST00000374619|HTR1D	ENSG00000179546|ENST00000374619|HTR1D	ENSG00000179546|ENST00000374619|HTR1D	MULTI-SECPEP	A375_MHC_IP_R2	2	401.93145751953125	3	401.531527	1201.57275	0.043037	1.7281E-05	-0.33132	-0.00013303	-0.28828	-0.00011575	401.5313292652099	27.538	0.40547	28.216	27.996	28.401	0.67857					15	7	3	0	0	0	0.90513	1	9446	9446		10.899	6.183	1	4024600			46766	8237	34058	34329	45699	45699					-0.019972653673448804
SEAWRRVWS	9	Unmodified	_SEAWRRVWS_					0	0	0		ENSG00000173456|ENST00000311413|RNF26	ENSG00000173456|ENST00000311413|RNF26	ENSG00000173456|ENST00000311413|RNF26	MULTI-SECPEP	A375_MHC_IP_R1	1	588.6723022460938	2	588.799072	1175.58359	0.028948	1.7045E-05	-2.485	-0.0014632	-2.4561	-0.0014461	588.7981554377399	48.197	0.40567	48.197	48.02	48.426	0					12	7	2	0	0	0	0.43707	1	16938	16938		21.747	4.6338	1	1796400			46767	7798	34059	34330	45700	45700					0.0028218179761552165
SEAYYRLTA	9	Unmodified	_SEAYYRLTA_					0	0	0		tr|U7SQU0|U7SQU0_FUSNURibbon-helix-helixproteinCopGdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01687PE=4SV=1	tr|U7SQU0|U7SQU0_FUSNURibbon-helix-helixproteinCopGdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01687PE=4SV=1	tr|U7SQU0|U7SQU0_FUSNURibbon-helix-helixproteinCopGdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01687PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1558837890625	2	537.266739	1072.51892	-0.8782	-0.00047183	-0.44636	-0.00023982	-1.3246	-0.00071165	537.2663623229395	30.957	0.40475	30.957	30.806	31.211	0					10	7	2	0	0	0	0.47368	1	9851	9851		26.884	5.137	1	566980			46768	29599	34060	34331	45701	45701					-0.014434377990482972
SECCQGNEPFY	11	Unmodified	_SECCQGNEPFY_					0	0	0			REV__ENST00000418370.6_1_3:123339058-123339328:-|nuORF	REV__ENST00000418370.6_1_3:123339058-123339328:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	639.2081298828125	2	638.734088	1275.45362	-0.63871	-0.00040796	-1.8554	-0.0011851	-2.4942	-0.0015931	639.2334392627863	98.429	0.20608	98.429	98.3	98.507	0					5	3	2	0	0	0	0.73016	1	36144	36144		8.7454	4.801	1	597230	+		46769	24555	34061	34332	45702	45702					-0.1730854337870369
SECCSPCCSS	10	Unmodified	_SECCSPCCSS_					0	0	0			REV__ENSG00000241241|ENST00000440582|KRTAP4-16	REV__ENSG00000241241|ENST00000440582|KRTAP4-16	MSMS	A375_MHC_IP_R1	1	503.1973571777344	2	503.142663	1004.27077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.028	1	43.028	42.528	43.528	0								0	0	0	0.1552	1	14939	14939		3.9444	3.1508	1		+		46770	22786	34062	34333	45703	45703					-0.231191370365309
SECLGQIVLSM	11	Unmodified	_SECLGQIVLSM_					0	0	0			REV__ENST00000266771.9_1_12:129278384-129278573:-|nuORF	REV__ENST00000266771.9_1_12:129278384-129278573:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	394.26348876953125	3	393.86312	1178.56753	-0.20352	-8.0159E-05	0.55427	0.00021831	0.35075	0.00013815	393.86339364629475	41.701	0.56199	41.701	41.47	42.032	0					20	10	3	0	0	0	0.87263	1	14428	14428		29.281	1.0998	1	2236300	+		46771	23259	34063	34334	45704	45704					-0.01461028545827503
SECVGCDC	8	Unmodified	_SECVGCDC_					0	0	0			REV__ENST00000504562.1_1_5:40835122-40835287:-|nuORF	REV__ENST00000504562.1_1_5:40835122-40835287:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	814.8756713867188	1	815.236837	814.22956	-0.3852	-0.00031403	3.7741	0.0030767	3.3889	0.0027627	815.2401029341953	125.52	1.5086	125.52	125	126.51	0					36	29	2	0	0	0	0.972	1	47522	47522		2.5775	0	1	1300800000	+		46772	25529	34064	34335	45705	45705					-0.18498530013687287
SECYSGCC	8	Unmodified	_SECYSGCC_					0	0	0		nc|ENSG00000196748|Q6UWE3-2|CLPSL2;ENSG00000196748|ENST00000403376|CLPSL2	nc|ENSG00000196748|Q6UWE3-2|CLPSL2	nc|ENSG00000196748|Q6UWE3-2|CLPSL2	MULTI-SECPEP	A375_MHC_IP_R1	1	850.6317138671875	1	851.236837	850.22956	0.083981	7.1488E-05	-4.0001	-0.003405	-3.9161	-0.0033335	851.2339396562431	113.04	0.35084	113.04	112.79	113.14	0					8	6	2	0	0	0	0.972	1	41423	41423		0	0	1	1986400			46773	14840	34065	34336	45706	45706					-0.20154530013689964
SEDANVPVT	9	Unmodified	_SEDANVPVT_					0	0	0		ENST00000379303.9_1_X:23731314-23740043:-|nuORF	ENST00000379303.9_1_X:23731314-23740043:-|nuORF	ENST00000379303.9_1_X:23731314-23740043:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	931.0601806640625	1	931.436717	930.429441	-0.092249	-8.5924E-05	-2.478	-0.0023081	-2.5703	-0.002394	931.43392416603	110.97	0.50829	111.71	111.45	111.96	0.73691					12	9	2	0	0	0	0.67483	1	41925	41925		3.2813	0.97858	1	2986400			46774	11331	34066	34337	45707	45707					-0.03855692478430228
SEDATIKVWDY	11	Unmodified	_SEDATIKVWDY_					0	0	0		ENSG00000007168|ENST00000397195|PAFAH1B1;ENST00000609078.1_1_17:2569342-2573633:+|nuORF	ENSG00000007168|ENST00000397195|PAFAH1B1	ENSG00000007168|ENST00000397195|PAFAH1B1	MULTI-MSMS	A375_MHC_IP_R1	1	664.2138671875	2	663.81425	1325.61395	-0.69523	-0.0004615	0.23741	0.00015759	-0.45782	-0.00030391	663.8142913858691	80.5	0.45454	80.5	80.238	80.693	0					11	8	2	0	0	0	0.32336	1	29434	29434		44.945	33.45	1	1920200			46775	935	34067	34338	45708	45708					-0.0358354911850256
SEDATIKVWDY	11	Unmodified	_SEDATIKVWDY_					0	0	0		ENSG00000007168|ENST00000397195|PAFAH1B1;ENST00000609078.1_1_17:2569342-2573633:+|nuORF	ENSG00000007168|ENST00000397195|PAFAH1B1	ENSG00000007168|ENST00000397195|PAFAH1B1	MULTI-MATCH	A375_MHC_IP_R2	2		2	663.81425	1325.61395	-0.79501	-0.00052774	-0.68562	-0.00045513	-1.4806	-0.00098286	663.8140221173525	79.767	0.30692	80.512	80.401	80.708	0.74474	0.0056842	-0.00099972	NaN	44.945	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1738600			46776	935	34067	34338							-0.0358354911850256
SEDCNCESNC	10	Unmodified	_SEDCNCESNC_					0	0	0			REV__nc|ENSG00000205754|G3V0H7|SLCO1B7	REV__nc|ENSG00000205754|G3V0H7|SLCO1B7	MSMS	A375_MHC_IP_R2	2	552.1846923828125	2	552.157356	1102.30016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.149	1	82.892	82.392	83.392	0.74293								0	0	0	0.15642	1	31204	31204		0	0	1		+		46777	27461	34068	34339	45709	45709					-0.24689901486704002
SEDCTDPDFN	10	Unmodified	_SEDCTDPDFN_					0	0	0			REV__nc|ENSG00000138162|O95359-2|TACC2	REV__nc|ENSG00000138162|O95359-2|TACC2	MSMS	A375_MHC_IP_R1	1	571.6746215820312	2	571.700768	1141.38698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.054	1	73.054	72.554	73.554	0								0	0	0	0.15158	1	26590	26590		14.838	2.3067	1		+		46778	19072	34069	34340	45710	45710					-0.17805455668963077
SEDDDCDDDDD	11	Unmodified	_SEDDDCDDDDD_					0	0	0		ENSG00000189269|ENST00000317749|DRICH1	ENSG00000189269|ENST00000317749|DRICH1	ENSG00000189269|ENST00000317749|DRICH1	MSMS	A375_MHC_IP_R2	2	629.68408203125	2	629.662234	1257.30991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.042	1	72.776	72.276	73.276	0.73421								0	0	0	0.16337	1	27337	27337		1.1933	0	1				46779	8976	34070	34341	45711	45711					-0.3084476346662086
SEDDDCDDDDD	11	Unmodified	_SEDDDCDDDDD_					0	0	0		ENSG00000189269|ENST00000317749|DRICH1	ENSG00000189269|ENST00000317749|DRICH1	ENSG00000189269|ENST00000317749|DRICH1	MSMS	A375_MHC_IP_R2	2	629.703369140625	2	629.662234	1257.30991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.128	1	72.862	72.362	73.362	0.73421								0	0	0	0.16354	1	27371	27371		0.30703	0	1				46780	8976	34070	34341	45712	45712					-0.3084476346662086
SEDDESKFCSY	11	Unmodified	_SEDDESKFCSY_					0	0	0		nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC;nc|ENSG00000134982|P25054-2|APC;APC|p.T1556Nfs*3|1|0.92|ENSG00000134982|chr5:112840254-112840255|-/A|frameshift_variant	nc|ENSG00000134982|P25054-3|APC	nc|ENSG00000134982|P25054-3|APC	MSMS	A375_MHC_IP_R1	1	655.2525024414062	2	655.248083	1308.48161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.029	1	59.029	58.529	59.529	0								0	0	0	0.1624	1	21221	21221		6.2058	2.2614	1				46781	4632	34071	34342	45713	45713					-0.1602894191762516
SEDDHGDECS	10	Unmodified	_SEDDHGDECS_					0	0	0		ENSG00000182255|ENST00000328224|KCNA4	ENSG00000182255|ENST00000328224|KCNA4	ENSG00000182255|ENST00000328224|KCNA4	MSMS	A375_MHC_IP_R1	1	547.1705322265625	2	547.172375	1092.3302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.725	1	83.725	83.225	84.225	0								0	0	0	0.15591	1	30643	30643		1.6526	0	1				46782	8393	34072	34343	45714	45714					-0.2122750322550928
SEDDIHRSI	9	Unmodified	_SEDDIHRSI_					0	0	0		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2;ENSG00000149658|ENST00000370339|YTHDF1;ENSG00000185728|ENST00000539294|YTHDF3	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000149658|ENST00000370339|YTHDF1;ENSG00000185728|ENST00000539294|YTHDF3	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-SECPEP	A375_MHC_IP_R1	1	358.2402038574219	3	357.84036	1070.49925	0.3055	0.00010932	-0.22537	-8.0648E-05	0.080127	2.8673E-05	357.840224873248	21.457	0.65913	21.457	20.997	21.656	0					21	12	3	0	0	0	0.54263	1	5639	5639		35.08	9.0823	1	3999000			46783	9273;5825;8688	34073	34344	45715	45715					-0.03317813809803738
SEDDLKTVF	9	Unmodified	_SEDDLKTVF_					0	0	0		ENSG00000106344|ENST00000223073|RBM28	ENSG00000106344|ENST00000223073|RBM28	ENSG00000106344|ENST00000223073|RBM28	MULTI-SECPEP	A375_MHC_IP_R1	1	527.6403198242188	2	527.258579	1052.50261	-0.4584	-0.00024169	0.41856	0.00022069	-0.039841	-2.1007E-05	527.2585289633442	63.432	0.56292	63.432	63.121	63.684	0					24	10	3	0	0	0	0.038931	1	22944	22944		100.09	47.822	1	8492600			46784	2684	34074	34345	45716	45716					-0.021545637557892405
SEDDLKTVF	9	Unmodified	_SEDDLKTVF_					0	0	0		ENSG00000106344|ENST00000223073|RBM28	ENSG00000106344|ENST00000223073|RBM28	ENSG00000106344|ENST00000223073|RBM28	MULTI-MSMS	A375_MHC_IP_R2	2	527.6686401367188	2	527.258579	1052.50261	-0.51265	-0.0002703	-0.38956	-0.0002054	-0.90221	-0.0004757	527.2581460065607	62.673	0.60614	63.415	63.13	63.736	0.74263					23	11	3	0	0	0	0.033808	1	23717	23717		71.708	27.85	1	8178200			46785	2684	34074	34345	45717	45717					-0.021545637557892405
SEDDPILQI	9	Unmodified	_SEDDPILQI_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155;ENST00000507233.1_1_5:37342606-37350289:-|nuORF	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-SECPEP	A375_MHC_IP_R1	1	1028.7701416015625	1	1029.50988	1028.50261	0.27128	0.00027928	-0.055418	-5.7053E-05	0.21586	0.00022223	1029.5091221660875	105.38	0.50689	105.38	105.05	105.55	0					13	9	2	0	0	0	0.59098	1	38679	38679		27.629	9.4825	1	3386700			46786	3161	34075	34346	45718	45718					-0.010505637558026137
SEDEDVKRF	9	Unmodified	_SEDEDVKRF_					0	0	0		tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1	tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1	tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	563.1280517578125	2	562.76456	1123.51457	-0.36885	-0.00020758	0.061022	3.4341E-05	-0.30783	-0.00017323	563.2662093645305	82.969	0.45214	82.969	82.672	83.125	0					11	8	2	0	0	0	0.65246	1	30270	30270		10.824	0.75	1	1237600			46787	30062	34076	34347	45719	45719					-0.04224947012630764
SEDEGNLRF	9	Unmodified	_SEDEGNLRF_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;ENST00000484393.1_1_1:39751227-39753267:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1431274414062	2	533.743628	1065.4727	-0.59919	-0.00031981	1.0588	0.00056515	0.45965	0.00024533	533.7444556058134	43.584	0.96006	44.356	43.826	44.786	0.7724					47	18	4	0	0	0	0.14572	1	16184	16184		53.833	19.431	1	4835800			46788	4099;14587	34077	34348	45720	45720					-0.0574150270113023
SEDEGQACDQY	11	Unmodified	_SEDEGQACDQY_					0	0	0			REV__ALK|p.H458Y|1|0.36|ENSG00000171094|chr2:29328392-29328392|G/A|missense_variant	REV__ALK|p.H458Y|1|0.36|ENSG00000171094|chr2:29328392-29328392|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	623.1239624023438	2	622.722232	1243.42991	-0.7995	-0.00049787	2.0826	0.0012969	1.2831	0.00079899	622.7242943024303	41.605	0.51136	41.605	41.317	41.828	0					20	9	3	0	0	0	0.69231	1	14439	14439		16.149	8.5402	1	5148300	+		46789	15358	34078	34349	45721	45721					-0.18206685611539797
SEDEGQACDQY	11	Unmodified	_SEDEGQACDQY_					0	0	0			REV__ALK|p.H458Y|1|0.36|ENSG00000171094|chr2:29328392-29328392|G/A|missense_variant	REV__ALK|p.H458Y|1|0.36|ENSG00000171094|chr2:29328392-29328392|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	622.722232	1243.42991	-1.0059	-0.00062643	2.3244	0.0014475	1.3185	0.00082105	622.7239862464269	41.056	0.60904	41.83	41.54	42.149	0.77451	0.11272	7.9383E-05	NaN	16.149	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5799300	+		46790	15358	34078	34349							-0.18206685611539797
SEDEIKKAY	9	Unmodified	_SEDEIKKAY_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-SECPEP	A375_MHC_IP_R1	1	361.9454040527344	3	361.516995	1081.52915	0.0588	2.1257E-05	0.082085	2.9675E-05	0.14088	5.0932E-05	361.5169569305881	19.649	0.35608	19.649	19.471	19.827	0					17	6	4	0	0	0	0.31606	1	4907	4907		30.703	12.84	1	9101600			46791	7279	34079	34350	45722	45722					-0.0083487486449485
SEDEIKKAY	9	Unmodified	_SEDEIKKAY_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-SECPEP	A375_MHC_IP_R1	1	542.1715698242188	2	541.771854	1081.52915	-0.70835	-0.00038377	0.001975	1.07E-06	-0.70638	-0.0003827	541.771954975601	19.648	0.35599	19.648	19.42	19.776	0					14	6	3	0	0	0	0.03341	1	4934	4934		103.42	33.087	1	6272800			46792	7279	34079	34350	45723	45723					-0.0083487486449485
SEDEIKKAY	9	Unmodified	_SEDEIKKAY_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-MATCH	A375_MHC_IP_R2	2		3	361.516995	1081.52915	-0.45414	-0.00016418	-0.3731	-0.00013488	-0.82724	-0.00029906	361.85114193804355	18.955	0.19953	19.559	19.483	19.683	0.60308	-0.045408	-0.00027914	NaN	30.703	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10190000			46793	7279	34079	34350							-0.0083487486449485
SEDEPLWKKY	10	Unmodified	_SEDEPLWKKY_					0	0	0		nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1;nc|ENSG00000017260|P98194-2|ATP2C1	nc|ENSG00000017260|P98194-4|ATP2C1	nc|ENSG00000017260|P98194-4|ATP2C1	MULTI-SECPEP	A375_MHC_IP_R1	1	432.6152648925781	3	432.215316	1293.62412	-0.27518	-0.00011894	0.097726	4.2239E-05	-0.17746	-7.67E-05	432.2153506842859	47.111	0.31001	47.111	46.901	47.211	0					9	5	2	0	0	0	0.92445	1	16587	16587		10.315	6.7282	1	1940400			46794	1040	34080	34351	45724	45724					-0.010949413932848984
SEDEPTRSL	9	Unmodified	_SEDEPTRSL_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000105576|ENST00000425528|TNPO2;ENSG00000083312|ENST00000337273|TNPO1;TNPO1|p.L145*|1|0.92|ENSG00000083312|chr5:72861883-72861899|TGTTGGATTCTGAAGAT/-|frameshift_variant;ENST00000589956.5_1_19:12822112-12831764:-|nuORF;ENST00000588484.1_1_19:12826020-12830096:-|nuORF;TNPO1|p.I372Nfs*2|1|0.2|ENSG00000083312|chr5:72883193-72883194|-/A|frameshift_variant	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	A375_MHC_IP_R1	1	517.282470703125	2	517.24346	1032.47237	-0.50564	-0.00026154	0.076402	3.9518E-05	-0.42924	-0.00022202	517.7448011039185	25.103	0.20186	25.103	25.002	25.204	0					6	3	2	0	0	0	0.2989	1	7290	7290		30.703	7.9672	1	3221200			46795	1776	34081	34352	45725	45725					-0.04256922420995579
SEDERFKEF	9	Unmodified	_SEDERFKEF_					0	0	0		ENSG00000110756|ENST00000349215|HPS5;nc|ENSG00000110756|Q9UPZ3-2|HPS5	ENSG00000110756|ENST00000349215|HPS5	ENSG00000110756|ENST00000349215|HPS5	MULTI-SECPEP	A375_MHC_IP_R1	1	594.171875	2	593.772385	1185.53022	-0.41321	-0.00024535	-0.31597	-0.00018762	-0.72918	-0.00043297	593.7720233210692	34.532	0.45623	34.532	34.303	34.759	0					12	8	2	0	0	0	0.53098	1	11435	11435		27.223	6.8087	1	2454800			46796	2946	34082	34353	45726	45726					-0.0551266049556034
SEDERLQW	8	Unmodified	_SEDERLQW_					0	0	0		nc|ENSG00000278259|Q96H55-4|MYO19;ENSG00000278259|ENST00000614623|MYO19;nc|ENSG00000278259|Q96H55-2|MYO19;MYO19|p.T408Ifs*3|1|0.4|ENSG00000278259|chr17:36509070-36509070|G/-|frameshift_variant;nc|ENSG00000278259|Q96H55-3|MYO19	nc|ENSG00000278259|Q96H55-4|MYO19	nc|ENSG00000278259|Q96H55-4|MYO19	MULTI-MSMS	A375_MHC_IP_R2	2	532.1637573242188	2	531.74617	1061.47779	-0.97972	-0.00052096	0.93812	0.00049884	-0.041601	-2.2121E-05	531.7467227724957	61.185	0.55424	61.93	61.668	62.223	0.74504					13	10	2	0	0	0	0.77123	1	23228	23228		14.582	4.3983	1	1682800			46797	10035	34083	34354	45727	45727					-0.050491988385147124
SEDEVKLAL	9	Unmodified	_SEDEVKLAL_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000514332.5_1_5:179048171-179050134:-|nuORF;ENST00000513972.5_1_5:179047887-179050134:-|nuORF;ENST00000524180.5_1_5:179047015-179050134:-|nuORF	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-SECPEP	A375_MHC_IP_R1	1	502.66851806640625	2	502.268947	1002.52334	-0.39939	-0.0002006	-0.17301	-8.69E-05	-0.5724	-0.0002875	502.2686796062642	64.263	0.60728	64.263	63.99	64.597	0					22	11	3	0	0	0	0.30133	1	23217	23217		51.415	20.147	1	4410400			46798	7374	34084	34355	45728	45728					0.022180266238478907
SEDEVKLAL	9	Unmodified	_SEDEVKLAL_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000514332.5_1_5:179048171-179050134:-|nuORF;ENST00000513972.5_1_5:179047887-179050134:-|nuORF;ENST00000524180.5_1_5:179047015-179050134:-|nuORF	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-SECPEP	A375_MHC_IP_R2	2	502.6685791015625	2	502.268947	1002.52334	-0.57013	-0.00028636	-0.78181	-0.00039268	-1.3519	-0.00067904	502.26864299934806	63.463	1.015	64.203	63.835	64.85	0.74022					33	19	3	0	0	0	0.20451	1	24031	24031		49.554	13.427	1	3730200			46799	7374	34084	34355	45729	45729					0.022180266238478907
SEDFDIRVF	9	Unmodified	_SEDFDIRVF_					0	0	0		ENSG00000125124|ENST00000245157|BBS2;ENST00000561951.5_1_16:56535647-56545169:-|nuORF;ENST00000565781.5_1_16:56536573-56553907:-|nuORF;ENST00000569342.5_1_16:56536573-56553774:-|nuORF	ENSG00000125124|ENST00000245157|BBS2	ENSG00000125124|ENST00000245157|BBS2	MULTI-MSMS	A375_MHC_IP_R1	1	564.6716918945312	2	564.272021	1126.52949	-0.39612	-0.00022352	-0.25266	-0.00014257	-0.64878	-0.00036609	564.271785141285	98.639	1.0707	98.639	98.352	99.422	0					50	20	4	0	0	0	0.020087	1	36222	36222		83.429	59.408	1	7002500			46800	3942	34085	34356	45730	45730					-0.028714551446228143
SEDFDIRVF	9	Unmodified	_SEDFDIRVF_					0	0	0		ENSG00000125124|ENST00000245157|BBS2;ENST00000561951.5_1_16:56535647-56545169:-|nuORF;ENST00000565781.5_1_16:56536573-56553907:-|nuORF;ENST00000569342.5_1_16:56536573-56553774:-|nuORF	ENSG00000125124|ENST00000245157|BBS2	ENSG00000125124|ENST00000245157|BBS2	MULTI-MSMS	A375_MHC_IP_R2	2	564.7285766601562	2	564.272021	1126.52949	-0.53694	-0.00030298	0.23962	0.00013521	-0.29732	-0.00016777	564.2721141830394	98.015	1.0182	98.775	98.385	99.403	0.75977					32	19	2	0	0	0	0.020087	2	37225	37225;37233		83.429	62.975	1	4555600			46801	3942	34085	34356	45731;45732	45731					-0.028714551446228143
SEDFEVSSFK	10	Unmodified	_SEDFEVSSFK_					0	0	0		ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	A375_MHC_IP_R1	1	588.1672973632812	2	587.766768	1173.51898	-0.18557	-0.00010907	0.10723	6.3025E-05	-0.078338	-4.6045E-05	587.767049004761	56.088	0.71149	56.088	55.635	56.347	0					21	13	2	0	0	0	0.36067	1	20127	20127		36.506	6.6656	1	2541700			46802	4718	34086	34357	45733	45733					-0.06083482589701816
SEDFLQDVS	9	Unmodified	_SEDFLQDVS_					0	0	0		ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	A375_MHC_IP_R1	1	520.6323852539062	2	520.232561	1038.45057	-0.64001	-0.00033295	-0.38711	-0.00020139	-1.0271	-0.00053434	520.2322781194923	27.643	0.80747	27.643	27.229	28.037	0					24	15	3	0	0	0	0.53748	1	8420	8420		13.042	0	1	4756900			46803	5434	34087	34358	45734	45734					-0.06711727169567894
SEDGAIHVI	9	Unmodified	_SEDGAIHVI_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;SEC14L1|p.E56K|1|0.26|ENSG00000129657|chr17:77190905-77190905|G/A|missense_variant	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-MSMS	A375_MHC_IP_R1	1	471.14007568359375	2	470.740357	939.46616	-0.15668	-7.3757E-05	-0.17067	-8.034E-05	-0.32735	-0.0001541	470.74016845809354	49.762	0.35642	49.762	49.591	49.947	0					11	6	2	0	0	0	0.021919	1	17644	17644		81.864	39.769	1	1633000			46804	4204	34088	34359	45735	45735					-0.005993958618546458
SEDGAIHVI	9	Unmodified	_SEDGAIHVI_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;SEC14L1|p.E56K|1|0.26|ENSG00000129657|chr17:77190905-77190905|G/A|missense_variant	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-SECPEP	A375_MHC_IP_R2	2	471.1396789550781	2	470.740357	939.46616	-0.72913	-0.00034323	0.19545	9.2007E-05	-0.53368	-0.00025122	470.74030569564763	48.944	0.40898	49.701	49.485	49.894	0.75736					16	7	3	0	0	0	0.52144	1	18442	18442		30.225	10.786	1	1585300			46805	4204	34088	34359	45736	45736					-0.005993958618546458
SEDGGVQLF	9	Unmodified	_SEDGGVQLF_					0	0	0		ENSG00000164338|ENST00000296792|UTP15;nc|ENSG00000164338|Q8TED0-3|UTP15	ENSG00000164338|ENST00000296792|UTP15	ENSG00000164338|ENST00000296792|UTP15	MULTI-MSMS	A375_MHC_IP_R1	1	952.0360717773438	1	951.441802	950.434526	-0.052009	-4.9483E-05	0.505	0.00048048	0.45299	0.00043099	951.4422159860795	89.956	0.50504	89.956	89.679	90.184	0					15	9	2	0	0	0	0.012843	1	33070	33070		92.653	48.795	1	2892800			46806	6829	34089	34360	45737	45737					-0.042673886158013374
SEDGITKIM	9	Unmodified	_SEDGITKIM_					0	0	0		ENST00000464057.5_1_6:4126367-4135774:-|nuORF;ENST00000464583.5_1_6:4126367-4133998:-|nuORF;ENST00000380120.6_1_6:4116110-4130812:-|nuORF;nc|ENSG00000198721|O75521-2|ECI2;ENSG00000198721|ENST00000380118|ECI2	ENST00000464057.5_1_6:4126367-4135774:-|nuORF	ENST00000464057.5_1_6:4126367-4135774:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	497.6489562988281	2	497.2497	992.484847	-0.57957	-0.00028819	-0.44111	-0.00021934	-1.0207	-0.00050753	497.24947096990235	50.936	0.40334	51.69	51.462	51.866	0.75406					12	7	2	0	0	0	0.31062	1	19197	19197		29.841	7.1043	1	2077800			46807	9307	34090	34361	45738	45738					-0.011696022823230123
SEDGKIHVW	9	Unmodified	_SEDGKIHVW_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-SECPEP	A375_MHC_IP_R1	1	357.91357421875	3	357.513696	1069.51926	-0.21233	-7.5911E-05	0.25376	9.0722E-05	0.041427	1.4811E-05	357.5137518972108	39.755	0.4569	39.755	39.491	39.948	0					30	8	5	0	0	0	0.05021	1	13593	13593		63.227	48.822	1	22039000			46808	6778	34091	34362	45739	45739					-0.012720180792030078
SEDGKIHVW	9	Unmodified	_SEDGKIHVW_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1664428710938	2	535.766906	1069.51926	-0.96534	-0.0005172	0.44714	0.00023956	-0.5182	-0.00027763	535.7671080641741	39.762	0.55747	39.762	39.441	39.999	0					30	10	4	0	0	0	0.0085579	1	13581	13581		149.91	108.07	1	31864000			46809	6778	34091	34362	45740	45740					-0.012720180792030078
SEDGKIHVW	9	Unmodified	_SEDGKIHVW_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	A375_MHC_IP_R2	2	357.9134826660156	3	357.513696	1069.51926	-0.45888	-0.00016405	0.015843	5.6641E-06	-0.44303	-0.00015839	357.5136461588395	38.912	0.71622	39.686	39.351	40.067	0.77451					35	13	4	0	0	0	0.064406	1	14311	14311		45.74	23.082	1	21621000			46810	6778	34091	34362	45741	45741					-0.012720180792030078
SEDGKIHVW	9	Unmodified	_SEDGKIHVW_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-SECPEP	A375_MHC_IP_R2	2	536.1664428710938	2	535.766906	1069.51926	-1.0945	-0.00058638	0.16349	8.7594E-05	-0.93098	-0.00049879	535.7669437836163	38.872	0.61494	39.647	39.401	40.016	0.77451					33	11	4	0	0	0	0.0085579	1	14309	14309		137.42	95.584	1	29189000			46811	6778	34091	34362	45742	45742					-0.012720180792030078
SEDGKVFFW	9	Unmodified	_SEDGKVFFW_					0	0	0		ENSG00000123154|ENST00000418543|WDR83	ENSG00000123154|ENST00000418543|WDR83	ENSG00000123154|ENST00000418543|WDR83	MULTI-SECPEP	A375_MHC_IP_R1	1	558.3641967773438	2	557.763832	1113.51311	-0.51991	-0.00028998	-0.22374	-0.00012479	-0.74365	-0.00041478	557.7635743913154	98.948	0.55872	98.948	98.659	99.218	0					16	10	2	0	0	0	0.63763	1	36349	36349		34.932	25.585	1	1067300			46812	3830	34092	34363	45743	45743					-0.03910536310718271
SEDGKVFFW	9	Unmodified	_SEDGKVFFW_					0	0	0		ENSG00000123154|ENST00000418543|WDR83	ENSG00000123154|ENST00000418543|WDR83	ENSG00000123154|ENST00000418543|WDR83	MULTI-SECPEP	A375_MHC_IP_R2	2	558.3636474609375	2	557.763832	1113.51311	-0.7603	-0.00042407	0.4737	0.00026421	-0.2866	-0.00015985	557.7637748920762	98.15	0.45786	98.91	98.64	99.098	0.75977					18	8	3	0	0	0	0.47206	1	37247	37247		49.554	34.306	1	1404600			46813	3830	34092	34363	45744	45744					-0.03910536310718271
SEDGKVQVF	9	Unmodified	_SEDGKVQVF_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-MSMS	A375_MHC_IP_R1	1	504.6563415527344	2	504.753464	1007.49238	-0.40453	-0.00020419	0.23667	0.00011946	-0.16786	-8.4726E-05	504.7538157154016	42.05	0.55782	42.05	41.828	42.386	0					25	10	3	0	0	0	0.0098085	1	14531	14531		114.2	60.369	1	9251700			46814	927	34093	34364	45745	45745					-0.011071266903741162
SEDGKVQVF	9	Unmodified	_SEDGKVQVF_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-SECPEP	A375_MHC_IP_R2	2	505.1533203125	2	504.753464	1007.49238	-0.91276	-0.00046072	3.3364	0.0016841	2.4236	0.0012233	504.7538876755328	41.279	0.55709	42.054	41.743	42.3	0.77451					30	10	5	0	0	0	0.036758	1	15320	15320		79.596	25.764	1	8553900			46815	927	34093	34364	45746	45746					-0.011071266903741162
SEDGLLKLW	9	Unmodified	_SEDGLLKLW_					0	0	0		ENSG00000122692|ENST00000397149|SMU1;nc|ENSG00000122692|Q2TAY7-2|SMU1	ENSG00000122692|ENST00000397149|SMU1	ENSG00000122692|ENST00000397149|SMU1	MULTI-MSMS	A375_MHC_IP_R1	1	531.1873779296875	2	530.787307	1059.56006	-0.40891	-0.00021704	-0.25623	-0.000136	-0.66513	-0.00035304	530.7870528140188	110.07	0.50812	110.07	109.83	110.34	0					18	9	3	0	0	0	0.0099819	2	40365	40365;40402		122.18	72.246	1	2378800			46816	3800	34094	34365	45747;45748	45747					0.03266323240427482
SEDGLLKLW	9	Unmodified	_SEDGLLKLW_					0	0	0		ENSG00000122692|ENST00000397149|SMU1;nc|ENSG00000122692|Q2TAY7-2|SMU1	ENSG00000122692|ENST00000397149|SMU1	ENSG00000122692|ENST00000397149|SMU1	MULTI-MSMS	A375_MHC_IP_R2	2	530.695068359375	2	530.787307	1059.56006	-0.55049	-0.00029219	0.41997	0.00022291	-0.13052	-6.9281E-05	530.7869820779775	109.2	0.50982	109.95	109.62	110.13	0.74684					19	9	3	0	0	0	0.12771	1	41257	41257		45.7	20.3	1	1003200			46817	3800	34094	34365	45749	45749					0.03266323240427482
SEDGSLHVF	9	Unmodified	_SEDGSLHVF_					0	0	0		WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENSG00000178252|ENST00000608424|WDR6;ENST00000420783.7_1_3:49051556-49052718:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	496.1296081542969	2	495.729989	989.445425	-0.42658	-0.00021147	-0.044156	-2.1889E-05	-0.47074	-0.00023336	495.72992523929526	59.016	0.9655	59.016	58.633	59.599	0					54	18	4	0	0	0	0.010819	1	21154	21154		131.3	76.524	1	34200000			46818	8149	34095	34366	45750	45750					-0.049719862415145144
SEDGSLHVF	9	Unmodified	_SEDGSLHVF_					0	0	0		WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENSG00000178252|ENST00000608424|WDR6;ENST00000420783.7_1_3:49051556-49052718:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	496.1296081542969	2	495.729989	989.445425	-0.75591	-0.00037473	-0.067071	-3.3249E-05	-0.82298	-0.00040798	495.7299255792478	58.202	1.0649	58.951	58.578	59.643	0.74895					57	20	4	0	0	0	0.043556	1	21964	21964		89.427	49.469	1	33223000			46819	8149	34095	34366	45751	45751					-0.049719862415145144
SEDGTLRLW	9	Unmodified	_SEDGTLRLW_					0	0	0		ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP	ENSG00000023734|ENST00000419869|STRAP	ENSG00000023734|ENST00000419869|STRAP	MULTI-SECPEP	A375_MHC_IP_R1	1	539.2206420898438	2	538.772188	1075.52982	-0.58692	-0.00031621	-0.088804	-4.7845E-05	-0.67572	-0.00036406	538.7720743884679	82.869	0.75838	82.869	82.571	83.329	0					42	14	4	0	0	0	0.019499	1	30286	30286		103.42	69.317	1	10320000			46820	1079	34096	34367	45752	45752					-0.0049203542478153395
SEDGTLRLW	9	Unmodified	_SEDGTLRLW_					0	0	0		ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP	ENSG00000023734|ENST00000419869|STRAP	ENSG00000023734|ENST00000419869|STRAP	MULTI-MSMS	A375_MHC_IP_R2	2	539.2208862304688	2	538.772188	1075.52982	-0.90141	-0.00048566	0.48327	0.00026037	-0.41814	-0.00022528	538.7724655513254	82.115	0.96398	82.858	82.533	83.497	0.74293					42	18	4	0	0	0	0.11715	2	31119	31119;31332		47.594	18.513	1	11074000			46821	1079	34096	34367	45753;45754	45753					-0.0049203542478153395
SEDGTVRLW	9	Unmodified	_SEDGTVRLW_					0	0	0		ENSG00000148835|ENST00000369839|TAF5;TAF5|p.S561F|1|0.17|ENSG00000148835|chr10:103385343-103385343|C/T|missense_variant	ENSG00000148835|ENST00000369839|TAF5	ENSG00000148835|ENST00000369839|TAF5	MULTI-SECPEP	A375_MHC_IP_R1	1	532.1640625	2	531.764363	1061.51417	-0.53612	-0.00028509	-0.02997	-1.5937E-05	-0.56609	-0.00030103	531.7643516328297	62.173	0.82057	62.173	61.788	62.609	0					34	15	3	0	0	0	0.028087	1	22416	22416		106.94	0	1	11518000			46822	5767	34097	34368	45755	45755					-0.01412321941825212
SEDGTVRLW	9	Unmodified	_SEDGTVRLW_					0	0	0		ENSG00000148835|ENST00000369839|TAF5;TAF5|p.S561F|1|0.17|ENSG00000148835|chr10:103385343-103385343|C/T|missense_variant	ENSG00000148835|ENST00000369839|TAF5	ENSG00000148835|ENST00000369839|TAF5	MULTI-SECPEP	A375_MHC_IP_R1	1	532.200439453125	2	531.764363	1061.51417	-0.84189	-0.00044769	0.58067	0.00030878	-0.26122	-0.00013891	531.7645951131458	68.494	0.40613	68.494	68.159	68.565	0					10	7	2	0	0	0	0.63327	1	24834	24834		24.021	0	1	2762400			46823	5767	34097	34368	45756	45756					-0.01412321941825212
SEDGTVRLW	9	Unmodified	_SEDGTVRLW_					0	0	0		ENSG00000148835|ENST00000369839|TAF5;TAF5|p.S561F|1|0.17|ENSG00000148835|chr10:103385343-103385343|C/T|missense_variant	ENSG00000148835|ENST00000369839|TAF5	ENSG00000148835|ENST00000369839|TAF5	MULTI-MSMS	A375_MHC_IP_R2	2	532.1998291015625	2	531.764363	1061.51417	-0.64408	-0.0003425	0.25393	0.00013503	-0.39014	-0.00020746	531.7645917779087	67.598	0.25514	68.334	68.155	68.41	0.73631					8	4	3	0	0	0	0.34064	1	25575	25575		27.629	0	1	1613700			46824	5767	34097	34368	45757	45757					-0.01412321941825212
SEDGTVRLW	9	Unmodified	_SEDGTVRLW_					0	0	0		ENSG00000148835|ENST00000369839|TAF5;TAF5|p.S561F|1|0.17|ENSG00000148835|chr10:103385343-103385343|C/T|missense_variant	ENSG00000148835|ENST00000369839|TAF5	ENSG00000148835|ENST00000369839|TAF5	MULTI-SECPEP	A375_MHC_IP_R2	2	532.1637573242188	2	531.764363	1061.51417	-0.99015	-0.00052653	0.27374	0.00014556	-0.71641	-0.00038096	531.7646201859208	61.402	1.0079	62.147	61.718	62.726	0.74503					41	19	3	0	0	0	0.11849	1	23228	23228		70.332	0	1	7308300			46825	5767	34097	34368	45758	45758					-0.01412321941825212
SEDHPHCRRRR	11	Unmodified	_SEDHPHCRRRR_					0	0	0		INHBA|p.R306C|1|0.51|ENSG00000122641|chr7:41690015-41690015|G/A|missense_variant	INHBA|p.R306C|1|0.51|ENSG00000122641|chr7:41690015-41690015|G/A|missense_variant	INHBA|p.R306C|1|0.51|ENSG00000122641|chr7:41690015-41690015|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	483.4720153808594	3	483.572725	1447.69635	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.212	1	43.984	43.484	44.484	0.7724								0	0	0	0.16269	1	16094	16094		4.7159	0.30977	1				46826	14165	34098	34369	45759	45759					-0.009594927480293336
SEDISYFSY	9	Unmodified	_SEDISYFSY_					0	0	0		ENST00000544802.5_1_7:72620489-72620588:+|nuORF	ENST00000544802.5_1_7:72620489-72620588:+|nuORF	ENST00000544802.5_1_7:72620489-72620588:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1446533203125	2	555.734937	1109.45532	-0.81991	-0.00045565	-0.936	-0.00052017	-1.7559	-0.00097582	555.73499277716	82.096	0.50941	82.839	82.533	83.042	0.74293					14	9	2	0	0	0	0.62767	1	31156	31156		23.148	2.6948	1	1187600			46827	13317	34099	34370	45760	45760					-0.0950284302680302
SEDITPRRY	9	Unmodified	_SEDITPRRY_					0	0	0		STAMBPL1|p.I42V|1|0.27|ENSG00000138134|chr10:88905536-88905536|A/G|missense_variant;ENSG00000138134|ENST00000371926|STAMBPL1;nc|ENSG00000138134|Q96FJ0-2|STAMBPL1	STAMBPL1|p.I42V|1|0.27|ENSG00000138134|chr10:88905536-88905536|A/G|missense_variant	STAMBPL1|p.I42V|1|0.27|ENSG00000138134|chr10:88905536-88905536|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	379.9280700683594	3	379.528005	1135.56219	0.63353	0.00024044	-0.54672	-0.00020749	0.086813	3.2948E-05	379.52784970195864	21.782	0.45705	21.782	21.505	21.962	0					16	8	3	0	0	0	0.11629	1	5795	5795		37.075	19.632	1	4515300			46828	4963	34100	34371	45761	45761					-0.00017248021754312504
SEDITPRRY	9	Unmodified	_SEDITPRRY_					0	0	0		STAMBPL1|p.I42V|1|0.27|ENSG00000138134|chr10:88905536-88905536|A/G|missense_variant;ENSG00000138134|ENST00000371926|STAMBPL1;nc|ENSG00000138134|Q96FJ0-2|STAMBPL1	STAMBPL1|p.I42V|1|0.27|ENSG00000138134|chr10:88905536-88905536|A/G|missense_variant	STAMBPL1|p.I42V|1|0.27|ENSG00000138134|chr10:88905536-88905536|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	379.92816162109375	3	379.528005	1135.56219	0.50416	0.00019134	-0.23481	-8.9116E-05	0.26936	0.00010223	379.5279266944254	22.993	0.90993	22.993	22.368	23.278	0					48	17	5	0	0	0	0.047602	1	6153	6153		51.415	28.757	1	36645000			46829	4963	34100	34371	45762	45762					-0.00017248021754312504
SEDITPRRY	9	Unmodified	_SEDITPRRY_					0	0	0		STAMBPL1|p.I42V|1|0.27|ENSG00000138134|chr10:88905536-88905536|A/G|missense_variant;ENSG00000138134|ENST00000371926|STAMBPL1;nc|ENSG00000138134|Q96FJ0-2|STAMBPL1	STAMBPL1|p.I42V|1|0.27|ENSG00000138134|chr10:88905536-88905536|A/G|missense_variant	STAMBPL1|p.I42V|1|0.27|ENSG00000138134|chr10:88905536-88905536|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	379.92791748046875	3	379.528005	1135.56219	0.048654	1.8466E-05	-0.55897	-0.00021214	-0.51031	-0.00019368	379.52790178189196	23.507	0.45938	23.507	23.278	23.737	0					20	8	4	0	0	0	0.13064	1	6476	6476		43.982	26.539	1	10495000			46830	4963	34100	34371	45763	45763					-0.00017248021754312504
SEDITPRRY	9	Unmodified	_SEDITPRRY_					0	0	0		STAMBPL1|p.I42V|1|0.27|ENSG00000138134|chr10:88905536-88905536|A/G|missense_variant;ENSG00000138134|ENST00000371926|STAMBPL1;nc|ENSG00000138134|Q96FJ0-2|STAMBPL1	STAMBPL1|p.I42V|1|0.27|ENSG00000138134|chr10:88905536-88905536|A/G|missense_variant	STAMBPL1|p.I42V|1|0.27|ENSG00000138134|chr10:88905536-88905536|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	379.927978515625	3	379.528005	1135.56219	-0.27198	-0.00010323	0.30941	0.00011743	0.037431	1.4206E-05	379.5281069065532	20.774	1.1677	21.385	20.651	21.819	0.61029					77	22	5	0	0	0	0.054426	2	6554	6341;6554		49.527	22.304	1	18682000			46831	4963	34100	34371	45764;45765	45765					-0.00017248021754312504
SEDITPRRY	9	Unmodified	_SEDITPRRY_					0	0	0		STAMBPL1|p.I42V|1|0.27|ENSG00000138134|chr10:88905536-88905536|A/G|missense_variant;ENSG00000138134|ENST00000371926|STAMBPL1;nc|ENSG00000138134|Q96FJ0-2|STAMBPL1	STAMBPL1|p.I42V|1|0.27|ENSG00000138134|chr10:88905536-88905536|A/G|missense_variant	STAMBPL1|p.I42V|1|0.27|ENSG00000138134|chr10:88905536-88905536|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	380.261474609375	3	379.528005	1135.56219	-0.27948	-0.00010607	-0.33619	-0.0001276	-0.61567	-0.00023366	379.5280681694101	23.063	0.45856	23.693	23.47	23.928	0.63014					17	8	3	0	0	0	0.10103	1	7390	7390		49.527	22.304	1	8529000			46832	4963	34100	34371	45766	45766					-0.00017248021754312504
SEDIVPTFLR	10	Unmodified	_SEDIVPTFLR_					0	0	0		tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1	tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1	tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1	MSMS	A375_MHC_IP_R2	2	392.90869140625	3	392.880156	1175.61864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.964	1	41.739	41.239	42.239	0.77451								0	0	0	0.15245	1	15186	15186		12.873	3.1084	1				46833	29980	34101	34372	45767	45767					0.03785379814871703
SEDKSIRVW	9	Unmodified	_SEDKSIRVW_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	A375_MHC_IP_R1	1	374.2647705078125	3	373.864617	1118.57202	0.63346	0.00023683	-0.25043	-9.3628E-05	0.38302	0.0001432	373.8645562869834	39.092	0.55981	39.092	38.832	39.391	0					19	10	2	0	0	0	0.05217	1	13312	13312		64.927	35.49	1	20624000			46834	3768	34102	34373	45768	45768					0.017479399836020093
SEDKSIRVW	9	Unmodified	_SEDKSIRVW_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	A375_MHC_IP_R1	1	560.693359375	2	560.293288	1118.57202	-0.18325	-0.00010267	0.06588	3.6912E-05	-0.11737	-6.5763E-05	560.293385025346	39.084	0.50923	39.084	38.882	39.391	0					22	9	3	0	0	0	0.13244	1	13335	13335		67.838	38.757	1	9151800			46835	3768	34102	34373	45769	45769					0.017479399836020093
SEDKSIRVW	9	Unmodified	_SEDKSIRVW_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	A375_MHC_IP_R2	2	374.605712890625	3	373.864617	1118.57202	0.053399	1.9964E-05	-0.15847	-5.9246E-05	-0.10507	-3.9281E-05	373.8645884668895	38.214	0.6623	38.989	38.739	39.401	0.77451					21	12	2	0	0	0	0.11849	1	14068	14068		57.108	27.67	1	22212000			46836	3768	34102	34373	45770	45770					0.017479399836020093
SEDKSIRVW	9	Unmodified	_SEDKSIRVW_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	A375_MHC_IP_R2	2	560.6419067382812	2	560.293288	1118.57202	-0.9614	-0.00053866	0.17965	0.00010066	-0.78174	-0.000438	560.2933162778476	38.241	0.56144	39.015	38.739	39.3	0.77451					22	10	3	0	0	0	0.20059	1	14092	14092		59.368	37.831	1	7408600			46837	3768	34102	34373	45771	45771					0.017479399836020093
SEDKTIKIW	9	Unmodified	_SEDKTIKIW_					0	0	0		ENST00000547496.5_1_12:89853476-89885774:-|nuORF;ENST00000539190.6_1_12:89855074-89919672:-|nuORF;nc|ENSG00000139323|Q8TC44-2|POC1B;ENSG00000139323|ENST00000313546|POC1B	ENST00000547496.5_1_12:89853476-89885774:-|nuORF	ENST00000547496.5_1_12:89853476-89885774:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	560.693359375	2	560.305864	1118.59717	-0.22769	-0.00012757	1.6243	0.00091009	1.3966	0.00078252	560.3063158714338	39.162	0.25497	39.162	38.983	39.238	0					8	4	3	0	0	0	0.74875	1	13335	13335		15.847	11.903	1	1313400			46838	5069	34103	34374	45772	45772					0.04261994786179457
SEDLASLKF	9	Unmodified	_SEDLASLKF_					0	0	0		nc|ENSG00000064012|Q14790-8|CASP8;nc|ENSG00000064012|Q14790-7|CASP8;ENST00000339403.6_1_2:202123080-202141717:+|nuORF;nc|ENSG00000064012|Q14790-2|CASP8;ENSG00000064012|ENST00000673742|CASP8;nc|ENSG00000064012|Q14790-4|CASP8;nc|ENSG00000064012|Q14790-9|CASP8;ENST00000471383.5_1_2:202131194-202137540:+|nuORF;nc|ENSG00000064012|Q14790-6|CASP8;nc|ENSG00000064012|Q14790-5|CASP8;nc|ENSG00000064012|Q14790-3|CASP8	nc|ENSG00000064012|Q14790-8|CASP8	nc|ENSG00000064012|Q14790-8|CASP8	MULTI-SECPEP	A375_MHC_IP_R1	1	505.2317199707031	2	505.263665	1008.51278	-0.38715	-0.00019561	2.5349	0.0012808	2.1478	0.0010852	505.76690887668985	77.397	0.25221	77.397	77.184	77.436	0					6	4	2	0	0	0	0.59098	1	28180	28180		27.629	7.1752	1	1023200			46839	1344	34104	34375	45773	45773					0.008860439694331035
SEDLLKEHY	9	Unmodified	_SEDLLKEHY_					0	0	0		nc|ENSG00000243678|P22392-2|NME2;ENST00000512768.1_1_17:49231734-49237541:+|nuORF;ENSG00000239672|ENST00000393196|NME1;nc|ENSG00000239672|P15531-2|NME1	nc|ENSG00000243678|P22392-2|NME2	nc|ENSG00000243678|P22392-2|NME2	MULTI-MSMS	A375_MHC_IP_R1	1	567.6771240234375	2	567.277303	1132.54005	-0.44236	-0.00025094	0.033572	1.9045E-05	-0.40879	-0.0002319	567.2771182880523	37.02	0.35258	37.02	36.795	37.148	0					11	6	2	0	0	0	0.052747	1	12472	12472		63.227	30.442	1	5076800			46840	14916	34105	34376	45774	45774					-0.020914724902013404
SEDLLKEHY	9	Unmodified	_SEDLLKEHY_					0	0	0		nc|ENSG00000243678|P22392-2|NME2;ENST00000512768.1_1_17:49231734-49237541:+|nuORF;ENSG00000239672|ENST00000393196|NME1;nc|ENSG00000239672|P15531-2|NME1	nc|ENSG00000243678|P22392-2|NME2	nc|ENSG00000243678|P22392-2|NME2	MULTI-SECPEP	A375_MHC_IP_R1	1	378.9206848144531	3	378.520628	1132.54005	0.25849	9.7843E-05	0.30629	0.00011594	0.56478	0.00021378	378.52065959458986	37.02	0.65849	37.02	36.795	37.454	0					21	12	3	0	0	0	0.0575	1	12436	12436		62.869	35.78	1	11072000			46841	14916	34105	34376	45775	45775					-0.020914724902013404
SEDLLKEHY	9	Unmodified	_SEDLLKEHY_					0	0	0		nc|ENSG00000243678|P22392-2|NME2;ENST00000512768.1_1_17:49231734-49237541:+|nuORF;ENSG00000239672|ENST00000393196|NME1;nc|ENSG00000239672|P15531-2|NME1	nc|ENSG00000243678|P22392-2|NME2	nc|ENSG00000243678|P22392-2|NME2	MULTI-MSMS	A375_MHC_IP_R2	2	378.9206848144531	3	378.520628	1132.54005	-0.0087779	-3.3226E-06	0.042209	1.5977E-05	0.033431	1.2654E-05	378.52059773485144	36.226	0.55988	36.997	36.749	37.308	0.7709					19	10	2	0	0	0	0.04093	1	13149	13149		55.249	22.351	1	10128000			46842	14916	34105	34376	45776	45776					-0.020914724902013404
SEDLLKEHY	9	Unmodified	_SEDLLKEHY_					0	0	0		nc|ENSG00000243678|P22392-2|NME2;ENST00000512768.1_1_17:49231734-49237541:+|nuORF;ENSG00000239672|ENST00000393196|NME1;nc|ENSG00000239672|P15531-2|NME1	nc|ENSG00000243678|P22392-2|NME2	nc|ENSG00000243678|P22392-2|NME2	MULTI-MSMS	A375_MHC_IP_R2	2	567.6751098632812	2	567.277303	1132.54005	-0.49913	-0.00028315	-1.1279	-0.00063983	-1.627	-0.00092297	567.2765638782984	36.208	0.40849	36.979	36.749	37.157	0.7709					13	7	2	0	0	0	0.02331	1	13174	13174		80.676	32.927	1	5057700			46843	14916	34105	34376	45777	45777					-0.020914724902013404
SEDLNKHVL	9	Unmodified	_SEDLNKHVL_					0	0	0		ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	MULTI-MSMS	A375_MHC_IP_R1	1	352.5888671875	3	352.189101	1053.54547	-0.27195	-9.5776E-05	0.098673	3.4752E-05	-0.17327	-6.1024E-05	352.1890687627449	27.12	0.45308	27.12	26.928	27.381	0					16	8	3	0	0	0	0.60982	1	8213	8213		14.405	3.6059	1	2398400			46844	7660	34106	34377	45778	45778					0.02084251092287559
SEDLQCVCL	9	Unmodified	_SEDLQCVCL_					0	0	0		CON__P02777	CON__P02777	CON__P02777	MULTI-SECPEP	A375_MHC_IP_R2	2	504.6154479980469	2	505.220085	1008.42562	-1.0281	-0.00051943	-0.34687	-0.00017525	-1.375	-0.00069468	505.22007697115396	34.147	1.0654	34.9	34.651	35.716	0.75225					46	20	3	0	0	0	0.75466	1	12485	12485		4.3292	0	1	10242000		+	46845	587	34107	34378	45779	45779					-0.0782582156814442
SEDNPQTLLF	10	Unmodified	_SEDNPQTLLF_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000107625|ENST00000373585|DDX50	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	A375_MHC_IP_R1	1	582.682373046875	2	582.282586	1162.55062	0.035107	2.0442E-05	0.0024135	1.4053E-06	0.03752	2.1847E-05	582.2826034597877	108.54	0.76109	108.54	108.15	108.92	0					38	14	4	0	0	0	0.018806	1	39765	39765		86.332	22.096	1	5649800			46846	6987	34108	34379	45780	45780					-0.02415489835743756
SEDNPQTLLF	10	Unmodified	_SEDNPQTLLF_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000107625|ENST00000373585|DDX50	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	A375_MHC_IP_R2	2	582.6823120117188	2	582.282586	1162.55062	-0.40762	-0.00023735	-0.068077	-3.964E-05	-0.4757	-0.00027699	582.2825512132111	107.73	0.86885	108.48	108.05	108.92	0.75436					38	16	3	0	0	0	0.018806	1	40657	40657		86.332	30.155	1	6956400			46847	6987	34108	34379	45781	45781					-0.02415489835743756
SEDNRILLW	9	Unmodified	_SEDNRILLW_					0	0	0		ENSG00000116455|ENST00000235090|WDR77;nc|ENSG00000116455|Q9BQA1-2|WDR77	ENSG00000116455|ENST00000235090|WDR77	ENSG00000116455|ENST00000235090|WDR77	MULTI-SECPEP	A375_MHC_IP_R2	2	573.7017822265625	2	573.301113	1144.58767	-0.072654	-4.1653E-05	0.73069	0.00041891	0.65804	0.00037725	573.3015479644204	95.544	1.1208	96.295	95.735	96.855	0.75045					45	21	3	0	0	0	0.042716	1	36302	36302		96.367	44.098	1	10658000			46848	3396	34109	34380	45782	45782					0.021162265006751113
SEDPDQQYL	9	Unmodified	_SEDPDQQYL_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-SECPEP	A375_MHC_IP_R1	1	548.1354370117188	2	547.735468	1093.45638	-0.51317	-0.00028108	-0.052973	-2.9015E-05	-0.56615	-0.0003101	547.7354091907062	53.488	0.91424	53.488	53.148	54.063	0					40	17	3	0	0	0	0.10103	1	19016	19016		62.573	31.936	1	13779000			46849	1476	34110	34381	45783	45783					-0.08660628657912639
SEDPDQQYL	9	Unmodified	_SEDPDQQYL_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MSMS	A375_MHC_IP_R2	2	548.1953735351562	2	547.735468	1093.45638	-1.3182	-0.00072205	0.17507	9.5893E-05	-1.1432	-0.00062615	547.7355199207718	52.923	0.81272	53.675	53.335	54.147	0.75105					39	15	4	0	0	0	0.58047	1	20133	20133		15.847	3.3156	1	14444000			46850	1476	34110	34381	45784	45784					-0.08660628657912639
SEDPDQQYL	9	Unmodified	_SEDPDQQYL_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	547.735468	1093.45638	-1.3182	-0.00072205	0.17507	9.5893E-05	-1.1432	-0.00062615	547.7355199207718	52.923	0.81272	53.675	53.335	54.147	0.75105	0.093132	0.00012066	NaN	62.573	39	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14444000			46851	1476	34110	34381							-0.08660628657912639
SEDPDYYQY	9	Unmodified	_SEDPDYYQY_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	A375_MHC_IP_R1	1	590.1713256835938	2	590.227476	1178.4404	-0.26387	-0.00015574	-0.56425	-0.00033303	-0.82812	-0.00048878	590.2271837623325	55.791	0.50997	55.791	55.431	55.941	0					12	9	2	0	0	0	0.32889	1	19892	19892		37.974	26.334	1	1721200			46852	9951	34111	34382	45785	45785					-0.14168334894793588
SEDPDYYQY	9	Unmodified	_SEDPDYYQY_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	A375_MHC_IP_R2	2	590.6271362304688	2	590.227476	1178.4404	-0.67755	-0.00039991	0.35733	0.00021091	-0.32022	-0.000189	590.2274577792813	55.255	0.50852	56.006	55.729	56.237	0.75075					14	9	2	0	0	0	0.084766	1	20909	20909		68.081	56.44	1	2408900			46853	9951	34111	34382	45786	45786					-0.14168334894793588
SEDPNYYQY	9	Unmodified	_SEDPNYYQY_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	MULTI-MSMS	A375_MHC_IP_R1	1	590.1358032226562	2	589.735468	1177.45638	-0.31814	-0.00018762	0.20989	0.00012378	-0.10825	-6.3839E-05	589.7354628347782	52.332	0.65986	52.332	52.034	52.694	0					27	12	3	0	0	0	0.015356	5	18584	18584;18632;18678;18692;18709		89.401	41.652	1	4696300			46854	7876	34112	34383	45787;45788;45789;45790;45791	45787					-0.12524628657911308
SEDPNYYQY	9	Unmodified	_SEDPNYYQY_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	MULTI-MSMS	A375_MHC_IP_R2	2	590.2058715820312	2	589.735468	1177.45638	-0.87222	-0.00051438	0.02432	1.4343E-05	-0.8479	-0.00050004	589.735381283195	51.859	0.81326	52.611	52.27	53.083	0.75225					26	15	2	0	0	0	0.029064	3	19523	19523;19572;19573		75.761	29.155	1	5276200			46855	7876	34112	34383	45792;45793;45794	45792					-0.12524628657911308
SEDPSHPSM	9	Unmodified	_SEDPSHPSM_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	A375_MHC_IP_R1	1	494.0973815917969	2	493.697832	985.38111	-0.63852	-0.00031524	0.23798	0.00011749	-0.40054	-0.00019774	493.698016752418	23.465	0.25464	23.465	23.33	23.584	0					7	4	2	0	0	0	0.60101	1	6485	6485		14.838	2.3067	1	2589700			46856	3005	34113	34384	45795	45795					-0.11216509389964813
SEDPSHPSM	9	Unmodified	_SEDPSHPSM_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MATCH	A375_MHC_IP_R2	2		2	493.697832	985.38111	-0.84699	-0.00041816	-0.13685	-6.7561E-05	-0.98383	-0.00048572	493.69771081192346	22.803	0.2554	23.433	23.265	23.521	0.63015	-0.015874	-4.9402E-05	NaN	14.838	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1385100			46857	3005	34113	34384							-0.11216509389964813
SEDPVAIKI	9	Unmodified	_SEDPVAIKI_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10;ENST00000540269.6_1_16:84778297-84793504:+|nuORF	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MSMS	A375_MHC_IP_R1	1	486.654541015625	2	486.274032	970.533512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.194	1	64.194	63.694	64.694	0								0	0	0	0.15273	1	23221	23221		17.113	0.96379	1				46858	2429	34114	34385	45796	45796					0.0470663434908829
SEDPVAIKI	9	Unmodified	_SEDPVAIKI_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10;ENST00000540269.6_1_16:84778297-84793504:+|nuORF	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MULTI-MSMS	A375_MHC_IP_R2	2	486.6542053222656	2	486.274032	970.533512	-0.55473	-0.00026975	-0.049756	-2.4195E-05	-0.60449	-0.00029395	486.27369627072363	63.203	0.45689	63.945	63.736	64.193	0.74263					12	8	2	0	0	0	0.44024	1	24020	24020		22.736	8.8302	1	668590			46859	2429	34114	34385	45797	45797					0.0470663434908829
SEDRDLLYSI	10	Unmodified	_SEDRDLLYSI_					0	0	0		ENSG00000011426|ENST00000265748|ANLN;nc|ENSG00000011426|Q9NQW6-2|ANLN	ENSG00000011426|ENST00000265748|ANLN	ENSG00000011426|ENST00000265748|ANLN	MULTI-SECPEP	A375_MHC_IP_R2	2	403.9468078613281	3	404.203187	1209.58773	-0.27946	-0.00011296	0.79172	0.00032002	0.51226	0.00020706	404.2028268558065	24.284	0.25396	24.927	24.755	25.009	0.64368					6	4	2	0	0	0	0.81532	1	7896	7896		17.049	0	1	1533800			46860	1001	34115	34386	45798	45798					-0.008678182899984677
SEDREPFSL	9	Unmodified	_SEDREPFSL_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;ENSG00000186260|ENST00000571589|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-SECPEP	A375_MHC_IP_R2	2	539.7182006835938	2	540.253828	1078.4931	-1.0779	-0.00058234	0.81293	0.00043919	-0.26497	-0.00014315	540.2546867147238	49.974	0.30569	50.728	50.599	50.904	0.75406					7	5	2	0	0	0	0.58271	1	18770	18770		14.838	0	1	947420			46861	8736	34116	34387	45799	45799					-0.04300332041339061
SEDRSVRIW	9	Unmodified	_SEDRSVRIW_					0	0	0		WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENSG00000178252|ENST00000608424|WDR6;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	383.5997009277344	3	383.2	1146.57817	0.041947	1.6074E-05	-0.75557	-0.00028953	-0.71362	-0.00027346	383.2000844818135	41.68	0.91767	41.68	41.215	42.132	0					75	17	6	0	0	0	0.016541	1	14380	14380		98.73	56.417	1	46595000			46862	8149;11731;12639	34117	34388	45800	45800					0.010744582151346549
SEDRSVRIW	9	Unmodified	_SEDRSVRIW_					0	0	0		WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENSG00000178252|ENST00000608424|WDR6;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	383.5711975097656	3	383.2	1146.57817	-0.31536	-0.00012085	-1.1024	-0.00042242	-1.4177	-0.00054327	383.2000615376196	40.845	0.76277	41.62	41.285	42.047	0.77451					63	14	6	0	0	0	0.60982	1	15263	15263		10.315	2.3698	1	37920000			46863	8149;11731;12639	34117	34388	45801	45801					0.010744582151346549
SEDSCLCCCCC	11	Unmodified	_SEDSCLCCCCC_					0	0	0		ENSG00000112559|ENST00000230321|MDFI	ENSG00000112559|ENST00000230321|MDFI	ENSG00000112559|ENST00000230321|MDFI	MSMS	A375_MHC_IP_R1	1	584.6513061523438	2	584.648941	1167.28333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.759	1	34.759	34.259	35.259	0								0	0	0	0.16354	1	11488	11488		0.30703	0.30703	1				46864	3094	34118	34389	45802	45802					-0.2936218496015499
SEDSDEEWRRC	11	Unmodified	_SEDSDEEWRRC_					0	0	0		ENSG00000157895|ENST00000288757|C12orf43	ENSG00000157895|ENST00000288757|C12orf43	ENSG00000157895|ENST00000288757|C12orf43	MULTI-MSMS	A375_MHC_IP_R1	1	706.6801147460938	2	706.28078	1410.54701	-0.39424	-0.00027845	-0.68659	-0.00048493	-1.0808	-0.00076337	706.280190562431	35.617	0.45975	35.617	35.319	35.778	0					19	8	3	0	0	0	0.72649	1	11865	11865		12.241	0	1	4751300			46865	6276	34119	34390	45803	45803					-0.141845276719323
SEDSDEEWRRC	11	Unmodified	_SEDSDEEWRRC_					0	0	0		ENSG00000157895|ENST00000288757|C12orf43	ENSG00000157895|ENST00000288757|C12orf43	ENSG00000157895|ENST00000288757|C12orf43	MULTI-MSMS	A375_MHC_IP_R2	2	706.6803588867188	2	706.28078	1410.54701	-0.946	-0.00066814	-0.31757	-0.0002243	-1.2636	-0.00089244	706.7818753754306	35.004	0.40423	35.768	35.576	35.98	0.76338					19	7	3	0	0	0	0.72649	1	12695	12695		12.241	0	1	4991900			46866	6276	34119	34390	45804	45804					-0.141845276719323
SEDSSVTQIY	10	Unmodified	_SEDSSVTQIY_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MSMS	A375_MHC_IP_R1	1	564.6561889648438	2	564.756401	1127.49825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.208	1	57.208	56.708	57.708	0								0	0	0	0.027481	1	20515	20515		69.105	36.799	1				46867	3557	34120	34391	45805	45805					-0.06040072969335597
SEDSSVTQIY	10	Unmodified	_SEDSSVTQIY_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-MSMS	A375_MHC_IP_R2	2	565.15625	2	564.756401	1127.49825	-0.8871	-0.00050099	0.63782	0.00036021	-0.24928	-0.00014078	564.7565871981922	56.693	0.61119	57.443	57.101	57.712	0.75014					23	11	3	0	0	0	0.069651	1	21418	21418		70.332	42.703	1	3107800			46868	3557	34120	34391	45806	45806					-0.06040072969335597
SEDSTKLFV	9	Unmodified	_SEDSTKLFV_					0	0	0		ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4	ENSG00000141076|ENST00000314423|UTP4	ENSG00000141076|ENST00000314423|UTP4	MULTI-MSMS	A375_MHC_IP_R2	2	513.6607055664062	2	513.261122	1024.50769	-0.85528	-0.00043898	1.8593	0.0009543	1.004	0.00051532	513.2608048591358	55.71	0.66186	56.46	56.134	56.796	0.75019					24	12	3	0	0	0	0.094655	1	21085	21085		51.63	5.6089	1	2021800			46869	5212	34121	34392	45807	45807					-0.0035825989318709617
SEDSTKLFV	9	Unmodified	_SEDSTKLFV_					0	0	0		ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4	ENSG00000141076|ENST00000314423|UTP4	ENSG00000141076|ENST00000314423|UTP4	MULTI-MATCH	A375_MHC_IP_R1	1		2	513.261122	1024.50769	-0.38485	-0.00019753	-0.87969	-0.00045151	-1.2645	-0.00064904	513.7621345481133	56.646	0.45784	56.646	56.295	56.753	0	0.092812	-0.0016262	NaN	51.63	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2071800			46870	5212	34121	34392							-0.0035825989318709617
SEDSTRRLF	9	Unmodified	_SEDSTRRLF_					0	0	0		ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	MULTI-SECPEP	A375_MHC_IP_R1	1	371.2562561035156	3	370.856122	1109.54654	0.35535	0.00013178	-0.077007	-2.8558E-05	0.27834	0.00010323	370.8560817039308	31.698	0.66276	31.698	31.465	32.127	0					31	12	3	0	0	0	0.46045	1	10172	10172		21.59	3.2171	1	9255400			46871	1252	34122	34393	45808	45808					-0.003855345388274145
SEDSTRRLF	9	Unmodified	_SEDSTRRLF_					0	0	0		ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	MULTI-SECPEP	A375_MHC_IP_R2	2	371.2562561035156	3	370.856122	1109.54654	0.34882	0.00012936	-0.18333	-6.7987E-05	0.16549	6.1374E-05	370.85598440869614	30.975	0.66092	31.694	31.467	32.128	0.71857					34	12	4	0	0	0	0.46045	1	10931	10931		21.59	3.2171	1	7330400			46872	1252	34122	34393	45809	45809					-0.003855345388274145
SEDTDYTDI	9	Unmodified	_SEDTDYTDI_					0	0	0			REV__ENST00000580556.5_1_11:118881994-118885036:+|nuORF	REV__ENST00000580556.5_1_11:118881994-118885036:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	530.1954345703125	2	529.711659	1057.40876	-0.54816	-0.00029036	1.4465	0.00076623	0.89836	0.00047587	529.7118546079649	83.444	0.61047	84.184	83.898	84.508	0.73962					16	11	3	0	0	0	0.46038	1	31773	31773		21.747	3.6117	1	1113800	+		46873	26342	34123	34394	45810	45810					-0.11764327648756989
SEDTDYTDI	9	Unmodified	_SEDTDYTDI_					0	0	0			REV__ENST00000580556.5_1_11:118881994-118885036:+|nuORF	REV__ENST00000580556.5_1_11:118881994-118885036:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	529.711659	1057.40876	-0.73164	-0.00038756	0.50298	0.00026643	-0.22866	-0.00012112	530.2131265089638	84.214	0.40218	84.214	83.989	84.391	0	0.015174	-0.00054547	NaN	21.747	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1143400	+		46874	26342	34123	34394							-0.11764327648756989
SEDTEMYIY	9	Unmodified	_SEDTEMYIY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;TTN|p.L14011*|1|0.26|ENSG00000155657|chr2:178618595-178618595|A/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R1	1	576.13427734375	2	575.73408	1149.45361	0.036539	2.1037E-05	0.19853	0.0001143	0.23507	0.00013534	575.7343708494203	109.3	0.6627	109.3	109.02	109.68	0					30	12	3	0	0	0	0.65246	1	40093	40093		15.847	3.3156	1	7845200			46875	6151	34124	34395	45811	45811					-0.11514220107051187
SEDTEMYIY	9	Unmodified	_SEDTEMYIY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;TTN|p.L14011*|1|0.26|ENSG00000155657|chr2:178618595-178618595|A/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R2	2	576.1342163085938	2	575.73408	1149.45361	-0.14284	-8.2241E-05	-0.042303	-2.4355E-05	-0.18515	-0.0001066	575.7343797625027	108.59	0.86707	109.34	109.06	109.93	0.74684					43	16	4	0	0	0	0.58047	1	40985	40985		15.847	0	1	9641400			46876	6151	34124	34395	45812	45812					-0.11514220107051187
SEDTEMYIY	9	Unmodified	_SEDTEMYIY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;TTN|p.L14011*|1|0.26|ENSG00000155657|chr2:178618595-178618595|A/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	575.73408	1149.45361	-0.14284	-8.2241E-05	-0.042303	-2.4355E-05	-0.18515	-0.0001066	575.7343797625027	108.59	0.86707	109.34	109.06	109.93	0.74684	0.022517	-0.00014888	NaN	15.847	43	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9641400			46877	6151	34124	34395							-0.11514220107051187
SEDVIARTY	9	Unmodified	_SEDVIARTY_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	A375_MHC_IP_R1	1	527.663818359375	2	527.264196	1052.51384	-0.44225	-0.00023318	-0.82359	-0.00043425	-1.2658	-0.00066743	527.2637097947119	37.642	1.5794	37.642	36.895	38.475	0					27	16	3	0	0	0	0.026372	2	12725	12663;12725		78.06	32.321	1	6273700			46878	1082	34125	34396	45813;45814	45814					-0.01031741661677188
SEDVIARTY	9	Unmodified	_SEDVIARTY_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	A375_MHC_IP_R2	2	526.659423828125	2	527.264196	1052.51384	-1.0773	-0.00056802	-0.15235	-8.0328E-05	-1.2296	-0.00064835	527.2641562019206	36.9	1.5784	37.671	37.157	38.735	0.7709					24	12	3	0	0	0	0.2989	1	13430	13430		30.703	8.0454	1	5222900			46879	1082	34125	34396	45815	45815					-0.01031741661677188
SEDVPTFKP	9	Unmodified	_SEDVPTFKP_					0	0	0			REV__ENSG00000164961|ENST00000318410|WASHC5	REV__ENSG00000164961|ENST00000318410|WASHC5	MULTI-SECPEP	A375_MHC_IP_R2	2	511.0337219238281	2	510.25584	1018.49713	-0.6045	-0.00030845	-0.26956	-0.00013755	-0.87407	-0.000446	510.25541508904354	135.71	0.46207	135.82	135.69	136.15	0.11134					11	8	2	0	0	0	0.76187	1	53350	53350		11.64	9.3376	1	500670	+		46880	20534	34126	34397	45816	45816					-0.0113824254760857
SEDVRKLYW	9	Unmodified	_SEDVRKLYW_					0	0	0		nc|ENSG00000113441|Q9UIQ6-3|LNPEP;nc|ENSG00000113441|Q9UIQ6-2|LNPEP;ENSG00000113441|ENST00000231368|LNPEP	nc|ENSG00000113441|Q9UIQ6-3|LNPEP	nc|ENSG00000113441|Q9UIQ6-3|LNPEP	MULTI-MSMS	A375_MHC_IP_R1	1	399.6083679199219	3	399.208384	1194.60332	-0.27572	-0.00011007	0.30682	0.00012249	0.031097	1.2414E-05	399.20844140055675	53.377	0.40601	53.377	53.099	53.505	0					12	7	2	0	0	0	0.6324	1	19042	19042		12.873	6.2422	1	2616300			46881	3151	34127	34398	45817	45817					0.013805130177161118
SEDVRKLYW	9	Unmodified	_SEDVRKLYW_					0	0	0		nc|ENSG00000113441|Q9UIQ6-3|LNPEP;nc|ENSG00000113441|Q9UIQ6-2|LNPEP;ENSG00000113441|ENST00000231368|LNPEP	nc|ENSG00000113441|Q9UIQ6-3|LNPEP	nc|ENSG00000113441|Q9UIQ6-3|LNPEP	MULTI-SECPEP	A375_MHC_IP_R2	2	399.3007507324219	3	399.208384	1194.60332	-0.50615	-0.00020206	0.69621	0.00027793	0.19006	7.5875E-05	399.54306995014144	52.507	0.45625	53.259	53.083	53.54	0.75225					12	8	2	0	0	0	0.51395	1	19827	19827		18.721	13.674	1	2985500			46882	3151	34127	34398	45818	45818					0.013805130177161118
SEEAARIFSLE	11	Unmodified	_SEEAARIFSLE_					0	0	0			REV__SERPINB9|p.P270Sfs*4|1|0.23|ENSG00000170542|chr6:2890486-2890487|-/A|frameshift_variant	REV__SERPINB9|p.P270Sfs*4|1|0.23|ENSG00000170542|chr6:2890486-2890487|-/A|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	418.2785339355469	3	417.878704	1250.61428	0.12543	5.2413E-05	0.19932	8.3291E-05	0.32474	0.0001357	417.8785924016186	34.328	0.75778	34.328	33.95	34.708	0					27	14	3	0	0	0	0.87233	1	11307	11307		25.155	6.8152	1	10207000	+		46883	21002	34128	34399	45819	45819					-0.0010012939865191584
SEEAEIIRKY	10	Unmodified	_SEEAEIIRKY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111591276-111591579:+|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	A375_MHC_IP_R1	1	413.6188049316406	3	413.218949	1236.63502	0.19333	7.9889E-05	-0.056447	-2.3325E-05	0.13689	5.6564E-05	413.21888933980597	34.334	1.1618	34.334	33.597	34.759	0					71	22	6	0	0	0	0.01042	1	11251	11251		92.201	47.809	1	193560000			46884	5434	34129	34400	45820	45820					0.02616460981016644
SEEAEIIRKY	10	Unmodified	_SEEAEIIRKY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111591276-111591579:+|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	A375_MHC_IP_R1	1	619.7245483398438	2	619.324785	1236.63502	-0.4552	-0.00028192	0.10284	6.369E-05	-0.35237	-0.00021823	619.3248039412194	34.336	0.65636	34.336	34.052	34.708	0					42	12	5	0	0	0	1.0734E-05	1	11263	11263		234.93	138.56	1	81805000			46885	5434	34129	34400	45821	45821					0.02616460981016644
SEEAEIIRKY	10	Unmodified	_SEEAEIIRKY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111591276-111591579:+|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	A375_MHC_IP_R2	2	413.61871337890625	3	413.218949	1236.63502	-0.48664	-0.00020109	0.17889	7.392E-05	-0.30775	-0.00012717	413.2189987498552	33.62	1.1686	34.372	33.534	34.702	0.75225					70	22	6	0	0	0	0.085909	1	11999	11999		66.683	35.047	1	180190000			46886	5434	34129	34400	45822	45822					0.02616460981016644
SEEAEIIRKY	10	Unmodified	_SEEAEIIRKY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111591276-111591579:+|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	A375_MHC_IP_R2	2	619.7243041992188	2	619.324785	1236.63502	-1.1967	-0.00074114	0.39961	0.00024749	-0.79708	-0.00049365	619.3250142665452	33.627	0.6078	34.379	34.095	34.702	0.75225					36	11	4	0	0	0	1.2204E-22	1	12017	12017		284.04	165.97	1	65619000			46887	5434	34129	34400	45823	45823					0.02616460981016644
SEEAVVTLLYE	11	Unmodified	_SEEAVVTLLYE_					0	0	0			REV__nc|ENSG00000175894|Q8WU66-2|TSPEAR	REV__nc|ENSG00000175894|Q8WU66-2|TSPEAR	MULTI-MSMS	A375_MHC_IP_R1	1	626.714111328125	2	626.819001	1251.62345	-0.60458	-0.00037896	-2.1535	-0.0013498	-2.7581	-0.0017288	626.817409584695	34.111	0.60845	34.111	33.898	34.507	0					19	11	2	0	0	0	0.73016	1	11368	11368		8.7454	2.5396	1	3395000	+		46888	21371	34130	34401	45824	45824					0.007702191669977765
SEEAVVTLLYE	11	Unmodified	_SEEAVVTLLYE_					0	0	0			REV__nc|ENSG00000175894|Q8WU66-2|TSPEAR	REV__nc|ENSG00000175894|Q8WU66-2|TSPEAR	MULTI-MSMS	A375_MHC_IP_R2	2	626.7139892578125	2	626.819001	1251.62345	-1.2032	-0.0007542	-1.3171	-0.00082559	-2.5203	-0.0015798	626.8178227713271	33.409	0.6581	34.161	33.942	34.6	0.75225					22	12	3	0	0	0	0.73016	1	12098	12098		8.7454	2.962	1	4029100	+		46889	21371	34130	34401	45825	45825					0.007702191669977765
SEECDEPHES	10	Unmodified	_SEECDEPHES_					0	0	0		ENSG00000249693|ENST00000512175|THEGL	ENSG00000249693|ENST00000512175|THEGL	ENSG00000249693|ENST00000512175|THEGL	MSMS	A375_MHC_IP_R1	1	581.1661987304688	2	581.203675	1160.3928	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.853	1	82.853	82.353	83.353	0								0	0	0	0.15308	1	30305	30305		10.824	2.9138	1				46890	9839	34131	34402	45826	45826					-0.18098357157305145
SEEDDDEEDY	10	Unmodified	_SEEDDDEEDY_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MSMS	A375_MHC_IP_R1	1	623.198486328125	2	623.19931	1244.38407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.415	1	29.415	28.915	29.915	0								0	0	0	0.1552	1	9205	9205		3.9444	2.2918	1				46891	6048	34132	34403	45827	45827					-0.22835052312780135
SEEDESPESV	10	Unmodified	_SEEDESPESV_					0	0	0			REV__nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	REV__nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MULTI-SECPEP	A375_MHC_IP_R2	2	554.215576171875	2	554.219848	1106.42514	-0.96808	-0.00053653	1.6572	0.00091846	0.68914	0.00038193	554.2210969538385	97.06	0.55553	97.816	97.419	97.974	0.75586					13	10	2	0	0	0	0.91556	1	36705	36705		6.2058	0	1	1558900	+		46892	20339	34133	34404	45828	45828					-0.12381246482641473
SEEDHWIY	8	Unmodified	_SEEDHWIY_					0	0	0		ENST00000451554.1_1_2:159145303-159312956:-|nuORF;ENSG00000153237|ENST00000283233|CCDC148;nc|ENSG00000153237|Q8NFR7-2|CCDC148;nc|ENSG00000153237|Q8NFR7-4|CCDC148	ENST00000451554.1_1_2:159145303-159312956:-|nuORF	ENST00000451554.1_1_2:159145303-159312956:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	539.3671875	2	539.727446	1077.44034	-0.63453	-0.00034247	0.89951	0.00048549	0.26498	0.00014302	540.229498977734	77.536	0.65997	77.536	77.133	77.793	0					21	11	2	0	0	0	0.972	1	28282	28282		4.756	0	1	2064000			46893	6020	34134	34405	45829	45829					-0.09528290104140069
SEEDIFRHL	9	Unmodified	_SEEDIFRHL_					0	0	0		ENSG00000122678|ENST00000242248|POLM;nc|ENSG00000122678|Q9NP87-2|POLM;ENST00000435068.5_1_7:44112892-44112991:-|nuORF	ENSG00000122678|ENST00000242248|POLM	ENSG00000122678|ENST00000242248|POLM	MULTI-SECPEP	A375_MHC_IP_R2	2	383.2780456542969	3	382.524372	1144.55129	-0.39907	-0.00015265	0.38361	0.00014674	-0.015455	-5.9121E-06	382.5244996138112	60.948	0.30227	61.693	61.566	61.869	0.74503					8	5	2	0	0	0	0.65527	1	23096	23096		8.4443	2.2525	1	1793000			46894	3798	34135	34406	45830	45830					-0.015206503960371265
SEEDLKVLF	9	Unmodified	_SEEDLKVLF_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	A375_MHC_IP_R1	1	540.6842041015625	2	540.284597	1078.55464	-0.70544	-0.00038114	0.32211	0.00017403	-0.38333	-0.00020711	540.2846848439783	89.806	0.9605	89.806	89.426	90.387	0					46	18	4	0	0	0	0.050868	1	32944	32944		63.961	18.261	1	15130000			46895	998	34136	34407	45831	45831					0.018505996579506245
SEEDLKVLF	9	Unmodified	_SEEDLKVLF_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	A375_MHC_IP_R2	2	540.6841430664062	2	540.284597	1078.55464	-0.76816	-0.00041502	0.029799	1.61E-05	-0.73836	-0.00039892	540.284501800707	89.052	0.80563	89.784	89.482	90.287	0.7318					38	15	3	0	0	0	0.0090499	1	33848	33848		100.09	43.914	1	11563000			46896	998	34136	34407	45832	45832					0.018505996579506245
SEEDNVPGHL	10	Unmodified	_SEEDNVPGHL_					0	0	0			REV__REST|p.G923Vfs*10|1|0.1|ENSG00000084093|chr4:56931625-56931626|-/T|frameshift_variant	REV__REST|p.G923Vfs*10|1|0.1|ENSG00000084093|chr4:56931625-56931626|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	548.1348266601562	2	548.74891	1095.48327	-1.2187	-0.00066876	0.30416	0.00016691	-0.91453	-0.00050185	548.749116250328	52.523	0.65741	53.275	52.932	53.59	0.75225					27	12	3	0	0	0	0.85226	1	19900	19900		10.074	0	1	3740700	+		46897	16817	34137	34408	45833	45833					-0.06065520046695383
SEEDQVRKW	9	Unmodified	_SEEDQVRKW_					0	0	0		nc|ENSG00000149100|Q7L2H7-2|EIF3M	nc|ENSG00000149100|Q7L2H7-2|EIF3M	nc|ENSG00000149100|Q7L2H7-2|EIF3M	MULTI-MSMS	A375_MHC_IP_R1	1	589.1852416992188	2	588.785827	1175.5571	-0.39823	-0.00023447	-0.14111	-8.3085E-05	-0.53934	-0.00031756	588.7856959160084	25.541	0.45877	25.541	25.357	25.816	0					20	8	3	0	0	0	0.0066517	1	7474	7474		165.72	104.36	1	11093000			46898	14672	34138	34409	45834	45834					-0.023655518843725076
SEEDQVRKW	9	Unmodified	_SEEDQVRKW_					0	0	0		nc|ENSG00000149100|Q7L2H7-2|EIF3M	nc|ENSG00000149100|Q7L2H7-2|EIF3M	nc|ENSG00000149100|Q7L2H7-2|EIF3M	MULTI-SECPEP	A375_MHC_IP_R1	1	392.9400329589844	3	392.859643	1175.5571	-0.011151	-4.3806E-06	-0.14642	-5.7524E-05	-0.15757	-6.1905E-05	392.8595536269427	25.535	0.66009	25.535	25.306	25.966	0					27	12	3	0	0	0	0.059859	1	7530	7530		57.249	31.228	1	26609000			46899	14672	34138	34409	45835	45835					-0.023655518843725076
SEEDQVRKW	9	Unmodified	_SEEDQVRKW_					0	0	0		nc|ENSG00000149100|Q7L2H7-2|EIF3M	nc|ENSG00000149100|Q7L2H7-2|EIF3M	nc|ENSG00000149100|Q7L2H7-2|EIF3M	MULTI-MSMS	A375_MHC_IP_R2	2	589.1856689453125	2	588.785827	1175.5571	-0.99112	-0.00058356	0.40358	0.00023762	-0.58753	-0.00034593	588.7861009273711	25.027	0.35731	25.671	25.516	25.873	0.64368					17	6	3	0	0	0	0.001114	2	8324	8279;8324		152.89	95.415	1	10114000			46900	14672	34138	34409	45836;45837	45837					-0.023655518843725076
SEEDQVRKW	9	Unmodified	_SEEDQVRKW_					0	0	0		nc|ENSG00000149100|Q7L2H7-2|EIF3M	nc|ENSG00000149100|Q7L2H7-2|EIF3M	nc|ENSG00000149100|Q7L2H7-2|EIF3M	MULTI-SECPEP	A375_MHC_IP_R2	2	393.25946044921875	3	392.859643	1175.5571	-0.61238	-0.00024058	0.30174	0.00011854	-0.31064	-0.00012204	392.8597386763257	25.008	0.563	25.652	25.465	26.028	0.64368					28	10	4	0	0	0	0.059859	1	8307	8307		65.474	33.436	1	28455000			46901	14672	34138	34409	45838	45838					-0.023655518843725076
SEEDRVVVI	9	Unmodified	_SEEDRVVVI_					0	0	0		ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	MULTI-SECPEP	A375_MHC_IP_R2	2	523.6788330078125	2	523.279846	1044.54514	-1.1427	-0.00059794	0.79999	0.00041862	-0.34268	-0.00017932	523.2803456140224	53.32	0.5629	54.071	53.79	54.353	0.75105					16	10	2	0	0	0	0.63622	1	20136	20136		19.362	3.2128	1	2589100			46902	5273	34139	34410	45839	45839					0.02464831372435583
SEEEALKQF	9	Unmodified	_SEEEALKQF_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB;ENST00000481749.5_1_3:138374233-138426144:-|nuORF	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-SECPEP	A375_MHC_IP_R1	1	541.16357421875	2	540.764029	1079.5135	-0.24073	-0.00013018	1.838	0.00099395	1.5973	0.00086377	540.7646533695254	44.587	0.81781	44.587	44.01	44.827	0					38	15	4	0	0	0	0.0043351	1	15557	15557		160.52	71.612	1	6565500			46903	1236	34140	34411	45840	45840					-0.023071613815318415
SEEEALKQF	9	Unmodified	_SEEEALKQF_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB;ENST00000481749.5_1_3:138374233-138426144:-|nuORF	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-SECPEP	A375_MHC_IP_R2	2	540.1853637695312	2	540.764029	1079.5135	-0.63952	-0.00034583	0.54649	0.00029552	-0.093026	-5.0305E-05	540.7641667435882	43.786	0.55418	44.555	44.329	44.883	0.7691					18	10	2	0	0	0	0.010874	1	16364	16364		125.53	69.352	1	6155200			46904	1236	34140	34411	45841	45841					-0.023071613815318415
SEEEFLRTY	9	Unmodified	_SEEEFLRTY_					0	0	0		ENSG00000178585|ENST00000377263|CTNNBIP1	ENSG00000178585|ENST00000377263|CTNNBIP1	ENSG00000178585|ENST00000377263|CTNNBIP1	MULTI-SECPEP	A375_MHC_IP_R1	1	587.6748657226562	2	587.274761	1172.53497	-0.27909	-0.0001639	2.1443	0.0012593	1.8652	0.0010954	587.2761077934983	59.424	1.1188	59.424	58.786	59.905	0					47	21	3	0	0	0	0.030244	1	21285	21285		107.1	61.079	1	12261000			46905	8168	34141	34412	45842	45842					-0.04439776352796798
SEEELKKAY	9	Unmodified	_SEEELKKAY_					0	0	0		ENSG00000168724|ENST00000648817|DNAJC21;nc|ENSG00000168724|Q5F1R6-3|DNAJC21;nc|ENSG00000168724|Q5F1R6-2|DNAJC21;DNAJC21|p.D214*|1|0.07|ENSG00000168724|chr5:34937521-34937522|AA/-|frameshift_variant	ENSG00000168724|ENST00000648817|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	MULTI-MSMS	A375_MHC_IP_R1	1	549.1793823242188	2	548.779679	1095.5448	-0.60623	-0.00033269	0.49943	0.00027407	-0.10681	-5.8613E-05	548.7797894277543	19.75	0.30603	19.75	19.571	19.877	0					8	5	2	0	0	0	0.04699	1	5001	5001		65.474	23.161	1	1604800			46906	7337	34142	34413	45843	45843					0.0008541165257156536
SEEELKKAY	9	Unmodified	_SEEELKKAY_					0	0	0		ENSG00000168724|ENST00000648817|DNAJC21;nc|ENSG00000168724|Q5F1R6-3|DNAJC21;nc|ENSG00000168724|Q5F1R6-2|DNAJC21;DNAJC21|p.D214*|1|0.07|ENSG00000168724|chr5:34937521-34937522|AA/-|frameshift_variant	ENSG00000168724|ENST00000648817|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	MULTI-SECPEP	A375_MHC_IP_R1	1	366.60540771484375	3	366.188878	1095.5448	0.1694	6.2032E-05	0.3417	0.00012513	0.5111	0.00018716	366.18897760110127	19.772	0.50879	19.772	19.42	19.928	0					12	9	2	0	0	0	0.53748	1	4998	4998		17.443	3.2245	1	1964000			46907	7337	34142	34413	45844	45844					0.0008541165257156536
SEEELNKSF	9	Unmodified	_SEEELNKSF_					0	0	0		VPS8|p.V377Ifs*5|1|0.55|ENSG00000156931|chr3:184855802-184855805|TTGT/-|frameshift_variant;nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8	VPS8|p.V377Ifs*5|1|0.55|ENSG00000156931|chr3:184855802-184855805|TTGT/-|frameshift_variant	VPS8|p.V377Ifs*5|1|0.55|ENSG00000156931|chr3:184855802-184855805|TTGT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	542.15283203125	2	541.753661	1081.49277	-0.66428	-0.00035988	-0.7791	-0.00042208	-1.4434	-0.00078196	541.7531172461245	34.416	0.70774	34.416	34.052	34.759	0					30	13	3	0	0	0	0.033808	1	11366	11366		71.708	13.029	1	2793800			46908	6218	34143	34414	45845	45845					-0.044717517611843505
SEEELNKSF	9	Unmodified	_SEEELNKSF_					0	0	0		VPS8|p.V377Ifs*5|1|0.55|ENSG00000156931|chr3:184855802-184855805|TTGT/-|frameshift_variant;nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8	VPS8|p.V377Ifs*5|1|0.55|ENSG00000156931|chr3:184855802-184855805|TTGT/-|frameshift_variant	VPS8|p.V377Ifs*5|1|0.55|ENSG00000156931|chr3:184855802-184855805|TTGT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	542.1532592773438	2	541.753661	1081.49277	-1.3316	-0.00072141	0.11052	5.9877E-05	-1.2211	-0.00066153	541.7534607120195	33.73	0.96235	34.482	34.095	35.057	0.75225					29	18	3	0	0	0	0.033808	1	12143	12143		71.708	3.6272	1	2798200			46909	6218	34143	34414	45846	45846					-0.044717517611843505
SEEEPKLKY	9	Unmodified	_SEEEPKLKY_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;ENSG00000006715|ENST00000310301|VPS41;nc|ENSG00000006715|P49754-3|VPS41;VPS41|p.E22K|1|0.52|ENSG00000006715|chr7:38869250-38869250|C/T|missense_variant	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-SECPEP	A375_MHC_IP_R1	1	375.6268310546875	3	374.860761	1121.56045	0.015667	5.8728E-06	-0.1754	-6.575E-05	-0.15973	-5.9878E-05	374.8606631697525	26.125	0.45696	26.125	25.966	26.423	0					20	8	3	0	0	0	0.72623	1	7686	7686		9.544	5.6676	1	10839000			46910	927	34144	34415	45847	45847					0.0045369816962193
SEEEPKLKY	9	Unmodified	_SEEEPKLKY_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;ENSG00000006715|ENST00000310301|VPS41;nc|ENSG00000006715|P49754-3|VPS41;VPS41|p.E22K|1|0.52|ENSG00000006715|chr7:38869250-38869250|C/T|missense_variant	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-SECPEP	A375_MHC_IP_R1	1	562.1865844726562	2	561.787504	1121.56045	-0.77601	-0.00043595	-0.17524	-9.8449E-05	-0.95125	-0.0005344	561.7874415259616	26.127	0.60746	26.127	25.866	26.474	0					19	11	3	0	0	0	0.15736	1	7770	7770		70.332	30.382	1	4027400			46911	927	34144	34415	45848	45848					0.0045369816962193
SEEEPKLKY	9	Unmodified	_SEEEPKLKY_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;ENSG00000006715|ENST00000310301|VPS41;nc|ENSG00000006715|P49754-3|VPS41;VPS41|p.E22K|1|0.52|ENSG00000006715|chr7:38869250-38869250|C/T|missense_variant	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-SECPEP	A375_MHC_IP_R2	2	562.1868286132812	2	561.787504	1121.56045	-1.0405	-0.00058457	-0.42137	-0.00023672	-1.4619	-0.00082129	561.7873871452408	25.591	0.45629	26.251	25.992	26.449	0.65992					14	8	2	0	0	0	0.22619	1	8571	8571		63.961	29.559	1	3279500			46912	927	34144	34415	45849	45849					0.0045369816962193
SEEEPKLKY	9	Unmodified	_SEEEPKLKY_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;ENSG00000006715|ENST00000310301|VPS41;nc|ENSG00000006715|P49754-3|VPS41;VPS41|p.E22K|1|0.52|ENSG00000006715|chr7:38869250-38869250|C/T|missense_variant	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-MATCH	A375_MHC_IP_R2	2		3	374.860761	1121.56045	-0.13446	-5.0405E-05	-0.18207	-6.8253E-05	-0.31654	-0.00011866	374.8606669421124	25.575	0.55832	26.235	25.992	26.551	0.65992	0.054762	-3.49E-06	NaN	6.1918	26	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11293000			46913	927	34144	34415							0.0045369816962193
SEEERCKYK	9	Unmodified	_SEEERCKYK_					0	0	0			REV__ENSG00000237353|ENST00000457514|PATE4	REV__ENSG00000237353|ENST00000457514|PATE4	MULTI-MSMS	A375_MHC_IP_R2	2	587.6742553710938	2	586.274238	1170.53392	-0.8875	-0.00052032	0.19256	0.00011289	-0.69494	-0.00040742	586.274590022347	58.654	1.2702	59.403	58.879	60.149	0.74894					72	24	5	0	0	0	0.43185	1	22125	22125		23.148	3.8914	1	65531000	+		46914	22763	34145	34416	45850	45850					-0.04452313993374446
SEEFHVAAW	9	Unmodified	_SEEFHVAAW_					0	0	0			REV__ENST00000453514.5_1_5:78908565-78908769:+|nuORF	REV__ENST00000453514.5_1_5:78908565-78908769:+|nuORF	MSMS	A375_MHC_IP_R2	2	538.2020874023438	2	538.245806	1074.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.863	1	31.581	31.081	32.081	0.71857								0	0	0	0.1499	1	10877	10877		21.747	7.8406	1		+		46915	24911	34146	34417	45851	45851					-0.057199934875598046
SEEFHVAAW	9	Unmodified	_SEEFHVAAW_					0	0	0			REV__ENST00000453514.5_1_5:78908565-78908769:+|nuORF	REV__ENST00000453514.5_1_5:78908565-78908769:+|nuORF	MSMS	A375_MHC_IP_R2	2	538.2109985351562	2	538.245806	1074.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.884	1	31.603	31.103	32.103	0.71857								0	0	0	0.1499	1	10885	10885		21.747	9.2151	1		+		46916	24911	34146	34417	45852	45852					-0.057199934875598046
SEEGIHFPW	9	Unmodified	_SEEGIHFPW_					0	0	0		nc|ENSG00000119946|Q9NRU3-2|CNNM1;ENSG00000119946|ENST00000356713|CNNM1	nc|ENSG00000119946|Q9NRU3-2|CNNM1	nc|ENSG00000119946|Q9NRU3-2|CNNM1	MULTI-MSMS	A375_MHC_IP_R2	2	552.1800537109375	2	551.253631	1100.49271	-0.68308	-0.00037655	-1.7904	-0.00098694	-2.4734	-0.0013635	551.2518782144423	90.975	1.7253	91.71	90.6	92.325	0.7345					46	33	3	0	0	0	0.6898	1	34202	34202		7.9102	0	1	1969200			46917	3639	34147	34418	45853	45853					-0.053517069705321774
SEEGLLRLY	9	Unmodified	_SEEGLLRLY_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;GTF3C1|p.S767Vfs*7|1|0.47|ENSG00000077235|chr16:27497688-27497688|T/-|frameshift_variant	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-SECPEP	A375_MHC_IP_R1	1	539.667236328125	2	540.290214	1078.56587	-0.70346	-0.00038007	-0.84876	-0.00045858	-1.5522	-0.00083865	540.289690531225	83.648	0.964	83.648	83.277	84.241	0					42	18	4	0	0	0	0.013591	1	30621	30621		118.07	78.111	1	18763000			46918	1649	34148	34419	45854	45854					0.029734217520854145
SEEGNIEHAF	10	Unmodified	_SEEGNIEHAF_					0	0	0		nc|ENSG00000124356|O95630-2|STAMBP;ENSG00000124356|ENST00000394070|STAMBP	nc|ENSG00000124356|O95630-2|STAMBP	nc|ENSG00000124356|O95630-2|STAMBP	MULTI-MSMS	A375_MHC_IP_R1	1	567.14892578125	2	566.74891	1131.48327	0.12585	7.1326E-05	-0.20318	-0.00011515	-0.077327	-4.3825E-05	566.7487168230165	44.656	0.66143	44.656	44.318	44.98	0					27	12	3	0	0	0	0.12159	1	15595	15595		76.825	40.698	1	5251200			46919	3894	34149	34420	45855	45855					-0.07721520046720798
SEEGNIEHAF	10	Unmodified	_SEEGNIEHAF_					0	0	0		nc|ENSG00000124356|O95630-2|STAMBP;ENSG00000124356|ENST00000394070|STAMBP	nc|ENSG00000124356|O95630-2|STAMBP	nc|ENSG00000124356|O95630-2|STAMBP	MULTI-MSMS	A375_MHC_IP_R2	2	567.1485595703125	2	566.74891	1131.48327	-0.20498	-0.00011617	-0.41097	-0.00023292	-0.61595	-0.00034909	566.7485728904197	43.986	0.60502	44.755	44.38	44.985	0.7691					30	11	4	0	0	0	0.048243	2	16396	16362;16396		87.258	36.632	1	4797200			46920	3894	34149	34420	45856;45857	45857					-0.07721520046720798
SEEGPGWTI	9	Unmodified	_SEEGPGWTI_					0	0	0		ENSG00000067533|ENST00000366932|RRP15	ENSG00000067533|ENST00000366932|RRP15	ENSG00000067533|ENST00000366932|RRP15	MULTI-MSMS	A375_MHC_IP_R2	2	488.6846008300781	2	488.224539	974.434526	-0.51048	-0.00024923	-1.1584	-0.00056555	-1.6689	-0.00081478	488.2238840055213	83.852	0.41014	84.591	84.407	84.817	0.73962					10	7	2	0	0	0	0.46038	1	31893	31893		21.747	2.3076	1	983140			46921	1439	34150	34421	45858	45858					-0.05371388615787964
SEEGPGWTI	9	Unmodified	_SEEGPGWTI_					0	0	0		ENSG00000067533|ENST00000366932|RRP15	ENSG00000067533|ENST00000366932|RRP15	ENSG00000067533|ENST00000366932|RRP15	MULTI-MATCH	A375_MHC_IP_R1	1		2	488.224539	974.434526	-0.47488	-0.00023185	0.47084	0.00022988	-0.0040381	-1.9715E-06	488.2244811229634	84.696	0.30653	84.696	84.494	84.8	0	0.052382	0.00045977	NaN	21.747	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	681930			46922	1439	34150	34421							-0.05371388615787964
SEEGYRSLF	9	Unmodified	_SEEGYRSLF_					0	0	0		nc|ENSG00000134812|P27352-2|CBLIF;ENSG00000134812|ENST00000257248|CBLIF	nc|ENSG00000134812|P27352-2|CBLIF	nc|ENSG00000134812|P27352-2|CBLIF	MULTI-SECPEP	A375_MHC_IP_R1	1	544.6548461914062	2	544.256371	1086.49819	-0.45688	-0.00024866	-1.1279	-0.00061388	-1.5848	-0.00086254	544.2558126113454	88.879	1.1699	88.879	88.205	89.375	0					36	22	2	0	0	0	0.53748	1	32674	32674		30.637	14.789	1	2582100			46923	4611	34151	34422	45859	45859					-0.04160028178716857
SEEHMKNKNNV	11	Unmodified	_SEEHMKNKNNV_					0	0	0		nc|ENSG00000181958|Q8NGL6|OR4A15	nc|ENSG00000181958|Q8NGL6|OR4A15	nc|ENSG00000181958|Q8NGL6|OR4A15	MSMS	A375_MHC_IP_R2	2	665.237548828125	2	665.314425	1328.6143	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.316	1	58.064	57.564	58.564	0.74894								0	0	0	0.14837	1	21671	21671		21.537	6.2885	1				46924	14798	34152	34423	45860	45860					-0.036864526703084266
SEEHQEPPDLP	11	Unmodified	_SEEHQEPPDLP_					0	0	0		ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	MSMS	A375_MHC_IP_R2	2	426.3827209472656	3	426.52633	1276.55716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.025	1	24.666	24.166	25.166	0.64093								0	0	0	0.16265	1	7826	7826		2.2527	0	1				46925	1556	34153	34424	45861	45861					-0.07005596675048764
SEEKEAFWFCS	11	Unmodified	_SEEKEAFWFCS_					0	0	0			REV__ENST00000544487.5_1_16:30768799-30770507:-|nuORF	REV__ENST00000544487.5_1_16:30768799-30770507:-|nuORF	MSMS	A375_MHC_IP_R1	1	681.8580322265625	2	681.787178	1361.5598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.311	1	59.311	58.811	59.811	0								0	0	0	0.16265	1	21332	21332		4.897	0	1		+		46926	25988	34154	34425	45862	45862					-0.10651464541729183
SEEKLRSLSL	10	Unmodified	_SEEKLRSLSL_					0	0	0		ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	MULTI-MSMS	A375_MHC_IP_R1	1	581.72705078125	2	581.327328	1160.6401	0.24115	0.00014019	-0.19726	-0.00011467	0.043887	2.5513E-05	581.3269666720623	48.755	0.45621	48.755	48.577	49.033	0					12	8	2	0	0	0	0.52785	1	17251	17251		26.268	1.2772	1	1940800			46927	7842	34155	34426	45863	45863					0.06620764843637517
SEEKLRSLSL	10	Unmodified	_SEEKLRSLSL_					0	0	0		ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	581.327328	1160.6401	-0.22793	-0.0001325	0.12977	7.5436E-05	-0.098169	-5.7068E-05	581.3275439738234	48.016	0.35125	48.777	48.582	48.933	0.76128	0.011163	0.00021624	NaN	26.268	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1877600			46928	7842	34155	34426							0.06620764843637517
SEEKNRTENY	10	Unmodified	_SEEKNRTENY_					0	0	0		nc|ENSG00000058729|Q9BVS4-2|RIOK2;ENSG00000058729|ENST00000283109|RIOK2	nc|ENSG00000058729|Q9BVS4-2|RIOK2	nc|ENSG00000058729|Q9BVS4-2|RIOK2	MSMS	A375_MHC_IP_R1	1	423.92767333984375	3	423.861713	1268.56331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.441	1	36.441	35.941	36.941	0								0	0	0	0.15308	1	12199	12199		6.1918	0	1				46929	1297	34156	34427	45864	45864					-0.06023078443513441
SEEKNSAVLC	10	Unmodified	_SEEKNSAVLC_					0	0	0		CARD10|p.R226C|1|0.44|ENSG00000100065|chr22:37515996-37515996|G/A|missense_variant	CARD10|p.R226C|1|0.44|ENSG00000100065|chr22:37515996-37515996|G/A|missense_variant	CARD10|p.R226C|1|0.44|ENSG00000100065|chr22:37515996-37515996|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	540.6993408203125	2	540.255514	1078.49647	-0.92853	-0.00050164	-2.8641	-0.0015474	-3.7926	-0.002049	540.2545419199996	55.51	0.71048	56.261	55.779	56.489	0.75075					16	13	2	0	0	0	0.70012	1	20930	20930		12.241	0.60036	1	1526300			46930	290	34157	34428	45865	45865					-0.03963405258969033
SEEKVFEAV	9	Unmodified	_SEEKVFEAV_					0	0	0		ENST00000504496.5_1_5:136997591-137028142:-|nuORF;ENST00000509028.1_1_4:166184411-166231758:+|nuORF;ENST00000504208.5_1_5:136964069-137033992:-|nuORF;nc|ENSG00000146021|Q9UH77-3|KLHL3;nc|ENSG00000109466|O95198-3|KLHL2;nc|ENSG00000146021|Q9UH77-2|KLHL3;ENSG00000146021|ENST00000309755|KLHL3;ENSG00000109466|ENST00000226725|KLHL2;nc|ENSG00000109466|O95198-2|KLHL2	ENST00000504496.5_1_5:136997591-137028142:-|nuORF	ENST00000504496.5_1_5:136997591-137028142:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	519.6973876953125	2	519.261122	1036.50769	-0.62445	-0.00032425	0.54625	0.00028365	-0.078201	-4.0607E-05	519.261364847176	63.496	0.66116	64.236	63.987	64.648	0.74023					22	12	2	0	0	0	0.51106	1	24095	24095		19.257	0	1	2919600			46931	2870	34158	34429	45866	45866					-0.00910259893203147
SEELDGLFRRY	11	Unmodified	_SEELDGLFRRY_					0	0	0		ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D	ENSG00000116604|ENST00000348159|MEF2D	ENSG00000116604|ENST00000348159|MEF2D	MULTI-MSMS	A375_MHC_IP_R1	1	693.0577392578125	2	692.846416	1383.67828	-0.38724	-0.0002683	0.19827	0.00013737	-0.18897	-0.00013093	692.8464389995075	71.928	0.65635	71.928	71.665	72.321	0					23	12	3	0	0	0	0.69069	2	26073	26073;26133		16.149	5.3252	1	7853700			46932	3410	34159	34430	45867;45868	45867					0.0017865075828922272
SEELDGLFRRY	11	Unmodified	_SEELDGLFRRY_					0	0	0		ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D	ENSG00000116604|ENST00000348159|MEF2D	ENSG00000116604|ENST00000348159|MEF2D	MULTI-MSMS	A375_MHC_IP_R1	1	462.633056640625	3	462.233369	1383.67828	-0.0081361	-3.7608E-06	-0.1193	-5.5147E-05	-0.12744	-5.8907E-05	462.2332815954012	71.943	1.0609	71.943	71.615	72.676	0					53	20	4	0	0	0	0.20854	1	26104	26104		53.798	31.689	1	20038000			46933	3410	34159	34430	45869	45869					0.0017865075828922272
SEELDGLFRRY	11	Unmodified	_SEELDGLFRRY_					0	0	0		ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D	ENSG00000116604|ENST00000348159|MEF2D	ENSG00000116604|ENST00000348159|MEF2D	MULTI-MSMS	A375_MHC_IP_R2	2	462.6326904296875	3	462.233369	1383.67828	-0.69792	-0.0003226	-0.1076	-4.9735E-05	-0.80552	-0.00037234	462.2332714391984	71.149	0.91099	71.884	71.605	72.516	0.73421					50	17	5	0	0	0	0.4957	1	26948	26948		31.462	9.3529	1	25215000			46934	3410	34159	34430	45870	45870					0.0017865075828922272
SEELDGLFRRY	11	Unmodified	_SEELDGLFRRY_					0	0	0		ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D	ENSG00000116604|ENST00000348159|MEF2D	ENSG00000116604|ENST00000348159|MEF2D	MULTI-MSMS	A375_MHC_IP_R2	2	693.24560546875	2	692.846416	1383.67828	-0.86552	-0.00059967	0.082476	5.7143E-05	-0.78304	-0.00054253	692.8462872821145	71.176	0.50751	71.91	71.706	72.213	0.73421					20	9	3	0	0	0	0.42205	1	26971	26971		45.74	26.378	1	6739300			46935	3410	34159	34430	45871	45871					0.0017865075828922272
SEELDGLFRRY	11	Unmodified	_SEELDGLFRRY_					0	0	0		ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D	ENSG00000116604|ENST00000348159|MEF2D	ENSG00000116604|ENST00000348159|MEF2D	MULTI-SECPEP	A375_MHC_IP_R2	2	461.63824462890625	3	462.233369	1383.67828	-0.4173	-0.00019289	0.04976	2.3001E-05	-0.36754	-0.00016989	462.23337052537863	69.539	0.35629	70.273	70.132	70.488	0.73421					10	6	2	0	0	0	0.99151	1	26356	26356		5.0475	2.2042	1	1224500			46936	3410	34159	34430	45872	45872					0.0017865075828922272
SEELFGKLY	9	Unmodified	_SEELFGKLY_					0	0	0			REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	MULTI-SECPEP	A375_MHC_IP_R1	1	543.1453857421875	2	543.279315	1084.54408	-0.35716	-0.00019404	0.14462	7.857E-05	-0.21253	-0.00011547	543.2791595845327	72.003	0.55388	72.003	71.615	72.169	0					16	10	2	0	0	0	0.63622	1	26088	26088		14.838	9.6076	1	1735600	+		46937	22593	34160	34431	45873	45873					0.005186170035358373
SEELGVRLE	9	Unmodified	_SEELGVRLE_					0	0	0			REV__nc|ENSG00000164458|O15178-2|TBXT	REV__nc|ENSG00000164458|O15178-2|TBXT	MULTI-SECPEP	A375_MHC_IP_R1	1	516.6716918945312	2	516.272021	1030.52949	-0.34494	-0.00017808	-0.31372	-0.00016197	-0.65866	-0.00034005	516.2718021537037	49.819	1.1736	49.819	49.439	50.613	0					54	22	3	0	0	0	0.10103	1	17590	17590		53.833	0	1	38725000	+		46938	20495	34161	34432	45874	45874					0.01544544855391905
SEELRNLGW	9	Unmodified	_SEELRNLGW_					0	0	0		ENSG00000181555|ENST00000409792|SETD2;nc|ENSG00000181555|Q9BYW2-2|SETD2;nc|ENSG00000181555|Q9BYW2-3|SETD2	ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	MULTI-SECPEP	A375_MHC_IP_R1	1	552.6777954101562	2	552.277638	1102.54072	-0.15992	-8.8322E-05	-0.0040714	-2.2485E-06	-0.164	-9.0571E-05	552.277642911705	69.637	1.0156	69.637	69.478	70.494	0					26	19	2	0	0	0	0.14606	1	25296	25296		63.961	31.655	1	1688900			46939	8351	34162	34433	45875	45875					-0.0064463305047866015
SEELRNLGW	9	Unmodified	_SEELRNLGW_					0	0	0		ENSG00000181555|ENST00000409792|SETD2;nc|ENSG00000181555|Q9BYW2-2|SETD2;nc|ENSG00000181555|Q9BYW2-3|SETD2	ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	MULTI-MSMS	A375_MHC_IP_R2	2	553.1788940429688	2	552.277638	1102.54072	-0.6788	-0.00037489	0.21306	0.00011767	-0.46574	-0.00025722	552.2775606856133	68.984	0.96358	69.719	69.423	70.387	0.73511					41	18	3	0	0	0	0.22013	1	26149	26149		36.506	13.77	1	1959700			46940	8351	34162	34433	45876	45876					-0.0064463305047866015
SEEMTYSF	8	Unmodified	_SEEMTYSF_					0	0	0		tr|U7T3M0|U7T3M0_FUSNUPhosphopantetheineadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaDPE=3SV=1	tr|U7T3M0|U7T3M0_FUSNUPhosphopantetheineadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaDPE=3SV=1	tr|U7T3M0|U7T3M0_FUSNUPhosphopantetheineadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaDPE=3SV=1	MSMS	A375_MHC_IP_R2	2	497.1732177734375	2	497.197133	992.379713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.148	1	45.914	45.414	46.414	0.76585								0	0	0	0.16876	1	16871	16871		9.3474	2.9933	1				46941	29981	34163	34434	45877	45877					-0.11678143478729908
SEENFFRIY	9	Unmodified	_SEENFFRIY_					0	0	0		nc|ENSG00000167632|Q96Q05-2|TRAPPC9;nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	MULTI-MSMS	A375_MHC_IP_R1	1	603.7786254882812	2	602.785296	1203.55604	-0.3703	-0.00022321	0.066994	4.0383E-05	-0.3033	-0.00018283	602.7852986001193	91.665	0.65701	91.665	91.35	92.007	0					23	12	3	0	0	0	0.46038	1	33634	33634		21.747	13.836	1	4059300			46942	14749	34164	34435	45878	45878					-0.0375976625327894
SEENFFRIY	9	Unmodified	_SEENFFRIY_					0	0	0		nc|ENSG00000167632|Q96Q05-2|TRAPPC9;nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	MULTI-SECPEP	A375_MHC_IP_R2	2	603.1841430664062	2	602.785296	1203.55604	-0.37057	-0.00022338	-0.47195	-0.00028449	-0.84253	-0.00050786	602.7851465413095	91.007	0.65869	91.742	91.463	92.122	0.7345					25	12	3	0	0	0	0.013591	1	34612	34612		106.94	75.672	1	5005600			46943	14749	34164	34435	45879	45879					-0.0375976625327894
SEENVIREF	9	Unmodified	_SEENVIREF_					0	0	0		ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF	ENSG00000213593|ENST00000278422|TMX2	ENSG00000213593|ENST00000278422|TMX2	MULTI-MSMS	A375_MHC_IP_R1	1	562.1928100585938	2	561.774928	1121.5353	-0.33723	-0.00018945	0.034903	1.9608E-05	-0.30232	-0.00016984	561.7749390271827	56.473	0.60965	56.473	56.194	56.804	0					25	11	3	0	0	0	0.029287	1	20275	20275		75.571	31.798	1	6375300			46944	9573	34165	34436	45880	45880					-0.02060356632955518
SEENVIREF	9	Unmodified	_SEENVIREF_					0	0	0		ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF	ENSG00000213593|ENST00000278422|TMX2	ENSG00000213593|ENST00000278422|TMX2	MULTI-MSMS	A375_MHC_IP_R2	2	562.17431640625	2	561.774928	1121.5353	-0.68117	-0.00038266	-0.23852	-0.00013399	-0.91969	-0.00051666	561.7747993569368	55.674	0.55894	56.425	56.135	56.694	0.75062					27	10	3	0	0	0	0.0098876	2	21019	21019;21059		125.04	66.208	1	4952200			46945	9573	34165	34436	45881;45882	45881					-0.02060356632955518
SEEPEVEPQ	9	Unmodified	_SEEPEVEPQ_					0	0	0			REV__ENST00000480032.4_1_2:166152333-166226884:+|nuORF;REV__nc|ENSG00000136531|Q99250-2|SCN2A	REV__nc|ENSG00000136531|Q99250-2|SCN2A	MULTI-MSMS	A375_MHC_IP_R1	1	522.7261352539062	2	522.230019	1042.44548	-0.48711	-0.00025439	-0.11736	-6.1288E-05	-0.60447	-0.00031567	522.2298691296132	36.126	0.71077	36.126	35.778	36.489	0					29	13	3	0	0	0	0.65721	1	11988	11988		10.824	0	1	10181000	+		46946	25241;18945	34166	34437	45883	45883					-0.07404031032183411
SEEPILKWY	9	Unmodified	_SEEPILKWY_					0	0	0		nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	nc|ENSG00000082153|Q7L1Q6-2|BZW1	nc|ENSG00000082153|Q7L1Q6-2|BZW1	MULTI-SECPEP	A375_MHC_IP_R1	1	583.200439453125	2	582.800414	1163.58628	-0.41953	-0.0002445	0.1346	7.8442E-05	-0.28494	-0.00016606	582.8004369657493	90.402	0.65967	90.402	90.032	90.692	0					27	12	3	0	0	0	0.056023	1	33191	33191		75.761	21.928	1	4664400			46947	1753	34167	34438	45884	45884					0.011025924118939656
SEEPILKWY	9	Unmodified	_SEEPILKWY_					0	0	0		nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	nc|ENSG00000082153|Q7L1Q6-2|BZW1	nc|ENSG00000082153|Q7L1Q6-2|BZW1	MULTI-MSMS	A375_MHC_IP_R2	2	583.2428588867188	2	582.800414	1163.58628	-0.30693	-0.00017888	-0.048257	-2.8124E-05	-0.35518	-0.000207	582.8001360911804	89.674	0.66571	90.406	90.085	90.751	0.7318					28	12	3	0	0	0	0.25276	1	34236	34236		34.102	12.356	1	3955700			46948	1753	34167	34438	45885	45885					0.011025924118939656
SEEQEESW	8	Unmodified	_SEEQEESW_					0	0	0		ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	MSMS	A375_MHC_IP_R1	1	512.1609497070312	2	512.198719	1022.38288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.217	1	48.217	47.717	48.717	0								0	0	0	0.16876	1	16997	16997		8.5933	0.68312	1				46949	4954	34168	34439	45886	45886					-0.127411771003608
SEERFYTKW	9	Unmodified	_SEERFYTKW_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL;AGL|p.D1232Vfs*10|1|0.09|ENSG00000162688|chr1:99902788-99902789|-/TGAAAATATAT|frameshift_variant;AGL|p.V671I|1|0.22|ENSG00000162688|chr1:99881301-99881301|G/A|missense_variant	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-SECPEP	A375_MHC_IP_R1	1	416.2679748535156	3	415.868139	1244.58259	0.79346	0.00032997	-0.36997	-0.00015386	0.42348	0.00017611	415.86782146211175	45.03	0.55682	45.03	44.827	45.384	0					22	10	3	0	0	0	0.23894	1	15732	15732		37.771	21.497	1	6453600			46950	6577	34169	34440	45887	45887					-0.02992077361977863
SEERFYTKW	9	Unmodified	_SEERFYTKW_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL;AGL|p.D1232Vfs*10|1|0.09|ENSG00000162688|chr1:99902788-99902789|-/TGAAAATATAT|frameshift_variant;AGL|p.V671I|1|0.22|ENSG00000162688|chr1:99881301-99881301|G/A|missense_variant	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-SECPEP	A375_MHC_IP_R2	2	416.26788330078125	3	415.868139	1244.58259	0.052946	2.2019E-05	1.2161	0.00050572	1.269	0.00052774	415.86802472901314	44.27	0.60742	45.039	44.732	45.34	0.7691					33	11	4	0	0	0	0.43207	1	16498	16498		31.636	19.408	1	7024300			46951	6577	34169	34440	45888	45888					-0.02992077361977863
SEERFYTKW	9	Unmodified	_SEERFYTKW_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL;AGL|p.D1232Vfs*10|1|0.09|ENSG00000162688|chr1:99902788-99902789|-/TGAAAATATAT|frameshift_variant;AGL|p.V671I|1|0.22|ENSG00000162688|chr1:99881301-99881301|G/A|missense_variant	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-SECPEP	A375_MHC_IP_R2	2	623.741943359375	2	623.29857	1244.58259	-0.66802	-0.00041637	-0.45001	-0.00028049	-1.118	-0.00069687	623.2981022564776	44.221	0.20267	44.99	44.883	45.086	0.76909					6	3	2	0	0	0	0.43207	1	16518	16518		33.445	10.296	1	1406600			46952	6577	34169	34440	45889	45889					-0.02992077361977863
SEESLGEDPG	10	Unmodified	_SEESLGEDPG_					0	0	0		ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant;ANK2|p.D3531Ffs*6|1|0.05|ENSG00000145362|chr4:113359207-113359208|-/ATTCTAT|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2	ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant	ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant	MSMS	A375_MHC_IP_R2	2	510.1633605957031	2	510.211826	1018.4091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.784	1	52.536	52.036	53.036	0.75225								0	0	0	0.15158	1	19498	19498		14.838	6.9281	1				46953	132	34170	34441	45890	45890					-0.09936907928886285
SEESLLTDAY	10	Unmodified	_SEESLLTDAY_					0	0	0			REV__nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5	REV__nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5	MSMS	A375_MHC_IP_R2	2	564.2266845703125	2	564.258776	1126.503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.133	1	74.871	74.371	75.371	0.73752								0	0	0	0.15332	1	28137	28137		10.074	0.6908	1		+		46954	22852	34171	34442	45891	45891					-0.055191888266108435
SEEVFAQVRR	10	Unmodified	_SEEVFAQVRR_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-SECPEP	A375_MHC_IP_R1	1	407.66461181640625	3	407.550921	1219.63093	0.084422	3.4406E-05	0.076862	3.1325E-05	0.16128	6.5732E-05	407.55092470515416	45.482	0.45284	45.482	45.234	45.687	0					12	8	2	0	0	0	0.86608	1	15924	15924		13.519	0	1	1751900			46955	8944	34172	34443	45892	45892					0.029904162779530452
SEEVPTLTY	9	Unmodified	_SEEVPTLTY_					0	0	0		ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1;ENST00000461510.1_1_22:21346043-21346739:+|nuORF;ENST00000492480.1_1_22:21346070-21348237:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1038.56591796875	1	1038.49898	1037.49171	0.33457	0.00034745	1.7416	0.0018087	2.0762	0.0021561	1038.4988334556829	78.914	0.40405	78.914	78.707	79.111	0					11	7	2	0	0	0	0.13797	1	28857	28857		43.858	9.7559	1	1237800			46956	12479	34173	34444	45893	45893					-0.025539661300854277
SEEVPTLTY	9	Unmodified	_SEEVPTLTY_					0	0	0		ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1;ENST00000461510.1_1_22:21346043-21346739:+|nuORF;ENST00000492480.1_1_22:21346070-21348237:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	520.1346435546875	2	519.75313	1037.49171	-0.62839	-0.00032661	-0.41884	-0.00021769	-1.0472	-0.0005443	519.7529736741548	78.35	0.40691	79.094	78.879	79.286	0.74421					12	7	2	0	0	0	0.47368	1	29688	29688		14.838	10.894	1	1069500			46957	12479	34173	34444	45894	45894					-0.025539661300854277
SEEVPTLTY	9	Unmodified	_SEEVPTLTY_					0	0	0		ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1;ENST00000461510.1_1_22:21346043-21346739:+|nuORF;ENST00000492480.1_1_22:21346070-21348237:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	1038.49898	1037.49171	0.082782	8.5969E-05	-0.53028	-0.0005507	-0.4475	-0.00046473	1038.4979510091555	78.364	0.40776	79.109	78.828	79.236	0.74474	0.097521	-0.00021552	NaN	43.858	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1535100			46958	12479	34173	34444							-0.025539661300854277
SEFALKVIFR	10	Unmodified	_SEFALKVIFR_					0	0	0			REV__ENSG00000149289|ENST00000278590|ZC3H12C	REV__ENSG00000149289|ENST00000278590|ZC3H12C	MSMS	A375_MHC_IP_R1	1	605.5726928710938	2	605.353148	1208.69174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.692	1	54.692	54.192	55.192	0								0	0	0	0.15435	1	19540	19540		6.7232	0.51738	1		+		46959	19672	34174	34445	45895	45895					0.09574553328161528
SEFATTNQI	9	Unmodified	_SEFATTNQI_					0	0	0		nc|ENSG00000149600|Q86VX2-2|COMMD7;ENSG00000149600|ENST00000278980|COMMD7;ENST00000610160.1_1_20:31291624-31315937:-|nuORF	nc|ENSG00000149600|Q86VX2-2|COMMD7	nc|ENSG00000149600|Q86VX2-2|COMMD7	MULTI-MSMS	A375_MHC_IP_R1	1	505.71099853515625	2	505.743096	1009.47164	-0.27978	-0.0001415	0.21991	0.00011122	-0.059873	-3.028E-05	505.74301498808035	54.523	0.55758	54.523	54.213	54.771	0					16	10	2	0	0	0	0.14922	1	19465	19465		41.84	20.093	1	3592700			46960	5820	34175	34446	45896	45896					-0.03271717070060731
SEFATTNQI	9	Unmodified	_SEFATTNQI_					0	0	0		nc|ENSG00000149600|Q86VX2-2|COMMD7;ENSG00000149600|ENST00000278980|COMMD7;ENST00000610160.1_1_20:31291624-31315937:-|nuORF	nc|ENSG00000149600|Q86VX2-2|COMMD7	nc|ENSG00000149600|Q86VX2-2|COMMD7	MULTI-SECPEP	A375_MHC_IP_R2	2	506.142822265625	2	505.743096	1009.47164	-1.1401	-0.00057661	0.48501	0.00024529	-0.65512	-0.00033132	505.74293832082463	53.816	0.61476	54.568	54.301	54.916	0.75105					19	11	3	0	0	0	0.20645	1	20322	20322		56.177	28.548	1	3056700			46961	5820	34175	34446	45897	45897					-0.03271717070060731
SEFDDEPKF	9	Unmodified	_SEFDDEPKF_					0	0	0		ENSG00000054118|ENST00000354618|THRAP3	ENSG00000054118|ENST00000354618|THRAP3	ENSG00000054118|ENST00000354618|THRAP3	MULTI-MSMS	A375_MHC_IP_R1	1	557.6947021484375	2	557.240386	1112.46622	-0.57803	-0.0003221	0.46086	0.00025681	-0.11717	-6.5292E-05	557.2405492721186	58.173	0.60819	58.173	57.873	58.481	0					24	11	3	0	0	0	0.26169	1	20885	20885		33.445	15.299	1	4409700			46962	1254	34176	34447	45898	45898					-0.0855144065251352
SEFDDEPKF	9	Unmodified	_SEFDDEPKF_					0	0	0		ENSG00000054118|ENST00000354618|THRAP3	ENSG00000054118|ENST00000354618|THRAP3	ENSG00000054118|ENST00000354618|THRAP3	MULTI-MSMS	A375_MHC_IP_R2	2	557.6397705078125	2	557.240386	1112.46622	-1.0939	-0.00060957	0.48574	0.00027068	-0.60817	-0.0003389	557.2406425537483	57.493	0.86703	58.242	57.711	58.578	0.74894					33	16	3	0	0	0	0.26169	1	21729	21729		33.445	15.299	1	4315100			46963	1254	34176	34447	45899	45899					-0.0855144065251352
SEFDFIVRY	9	Unmodified	_SEFDFIVRY_					0	0	0		nc|ENSG00000185920|Q13635-4|PTCH1;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1	nc|ENSG00000185920|Q13635-4|PTCH1	nc|ENSG00000185920|Q13635-4|PTCH1	MULTI-MSMS	A375_MHC_IP_R1	1	589.1928100585938	2	588.290214	1174.56587	-0.20561	-0.00012096	0.4441	0.00026126	0.23849	0.0001403	588.2901068043886	105.12	1.8305	105.12	104.59	106.42	0					75	35	4	0	0	0	0.02559	1	38543	38543		78.728	53.329	1	16440000			46964	8707	34177	34448	45900	45900					-0.0144257824788383
SEFDNRTSW	9	Unmodified	_SEFDNRTSW_					0	0	0		ENST00000477091.5_1_21:35445925-35497723:+|nuORF	ENST00000477091.5_1_21:35445925-35497723:+|nuORF	ENST00000477091.5_1_21:35445925-35497723:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	571.2020263671875	2	571.249077	1140.4836	-0.26301	-0.00015025	0.025442	1.4534E-05	-0.23757	-0.00013571	571.2491281729687	47.442	0.7654	47.442	47.003	47.768	0					40	14	4	0	0	0	0.038567	1	16612	16612		83.429	33.496	1	30425000			46965	12439	34178	34449	45901	45901					-0.08102100326846084
SEFEELERKY	10	Unmodified	_SEFEELERKY_					0	0	0		ENSG00000066135|ENST00000372396|KDM4A	ENSG00000066135|ENST00000372396|KDM4A	ENSG00000066135|ENST00000372396|KDM4A	MULTI-SECPEP	A375_MHC_IP_R1	1	444.28228759765625	3	443.882225	1328.62485	0.34793	0.00015444	-0.39185	-0.00017394	-0.04392	-1.9495E-05	443.88202503215297	48.611	0.55647	48.611	48.325	48.882	0					25	10	3	0	0	0	0.68818	1	17141	17141		32.616	23.373	1	6274800			46966	1404	34179	34450	45902	45902					-0.02632146744235797
SEFEELERKY	10	Unmodified	_SEFEELERKY_					0	0	0		ENSG00000066135|ENST00000372396|KDM4A	ENSG00000066135|ENST00000372396|KDM4A	ENSG00000066135|ENST00000372396|KDM4A	MULTI-SECPEP	A375_MHC_IP_R2	2	444.28167724609375	3	443.882225	1328.62485	-0.25909	-0.00011501	-0.2335	-0.00010365	-0.49259	-0.00021865	443.8820522020012	47.965	0.55506	48.727	48.378	48.933	0.76128					25	10	3	0	0	0	0.68818	1	17967	17967		38.559	23.02	1	7194400			46967	1404	34179	34450	45903	45903					-0.02632146744235797
SEFEGFEYI	9	Unmodified	_SEFEGFEYI_					0	0	0		PRKCI|p.P587S|1|0.27|ENSG00000163558|chr3:170303095-170303095|C/T|missense_variant;ENST00000478770.6_1_1:2113296-2116445:+|nuORF;nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;ENST00000505322.5_1_1:2100378-2116445:+|nuORF;nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000067606|ENST00000378567|PRKCZ;ENSG00000163558|ENST00000295797|PRKCI	PRKCI|p.P587S|1|0.27|ENSG00000163558|chr3:170303095-170303095|C/T|missense_variant	PRKCI|p.P587S|1|0.27|ENSG00000163558|chr3:170303095-170303095|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	560.6708984375	2	560.745305	1119.47606	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.468	1	72.202	71.702	72.702	0.73421								0	0	0	0.15071	1	27112	27112		28.487	15.955	1				46968	1442	34180	34451	45904	45904					-0.07890252647121088
SEFEKHDQL	9	Unmodified	_SEFEKHDQL_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	A375_MHC_IP_R2	2	567.1685180664062	2	566.767103	1131.51965	-0.32243	-0.00018274	2.9108	0.0016498	2.5884	0.001467	566.7698608921592	64.289	1.3228	65.029	64.292	65.615	0.74022					51	25	3	0	0	0	0.094655	1	24367	24367		51.63	20.993	1	5642200	+		46969	18428	34181	34452	45905	45905					-0.0408464315000856
SEFELLRSY	9	Unmodified	_SEFELLRSY_					0	0	0		ENST00000473417.5_1_3:125188296-125239016:-|nuORF;ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENSG00000114520|ENST00000251775|SNX4	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	572.6878051757812	2	572.287671	1142.56079	-0.45525	-0.00026053	0.91879	0.00052581	0.46354	0.00026528	572.78964974009	84.523	1.1193	84.523	84.091	85.21	0					36	21	3	0	0	0	0.13199	1	30984	30984		69.338	30.723	1	5540100			46970	3227	34182	34453	45906	45906					-0.004788821105194074
SEFFRSGKY	9	Unmodified	_SEFFRSGKY_					0	0	0		ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENSG00000074800|ENST00000234590|ENO1	ENSG00000074800|ENST00000234590|ENO1	MULTI-SECPEP	A375_MHC_IP_R1	1	374.5859069824219	3	374.185579	1119.53491	0.3831	0.00014335	0.097335	3.6421E-05	0.48043	0.00017977	374.18563929126134	33.773	1.5185	33.773	33.241	34.759	0					62	29	4	0	0	0	0.23894	1	11027	11027		44.392	26.949	1	49132000			46971	1593	34183	34454	45907	45907					-0.0200773156213927
SEFFRSGKY	9	Unmodified	_SEFFRSGKY_					0	0	0		ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENSG00000074800|ENST00000234590|ENO1	ENSG00000074800|ENST00000234590|ENO1	MULTI-SECPEP	A375_MHC_IP_R1	1	561.1746215820312	2	560.774731	1119.53491	-0.42191	-0.0002366	0.20341	0.00011407	-0.2185	-0.00012253	560.7747823505279	33.768	0.60645	33.768	33.547	34.154	0					31	11	4	0	0	0	0.011191	1	11046	11046		110.55	64.532	1	16960000			46972	1593	34183	34454	45908	45908					-0.0200773156213927
SEFFRSGKY	9	Unmodified	_SEFFRSGKY_					0	0	0		ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENSG00000074800|ENST00000234590|ENO1	ENSG00000074800|ENST00000234590|ENO1	MULTI-SECPEP	A375_MHC_IP_R2	2	374.585693359375	3	374.185579	1119.53491	0.25918	9.698E-05	-0.17185	-6.4302E-05	0.087329	3.2677E-05	374.18553773305376	32.953	1.3711	33.69	33.213	34.584	0.73691					54	26	4	0	0	0	0.074405	1	11738	11738		64.927	48.361	1	56513000			46973	1593	34183	34454	45909	45909					-0.0200773156213927
SEFFRSGKY	9	Unmodified	_SEFFRSGKY_					0	0	0		ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENSG00000074800|ENST00000234590|ENO1	ENSG00000074800|ENST00000234590|ENO1	MULTI-SECPEP	A375_MHC_IP_R2	2	561.174560546875	2	560.774731	1119.53491	-0.71574	-0.00040137	-0.07259	-4.0707E-05	-0.78833	-0.00044208	560.7746756135806	32.96	0.61125	33.696	33.468	34.079	0.73692					25	11	3	0	0	0	0.011364	1	11754	11754		117.84	77.888	1	19302000			46974	1593	34183	34454	45910	45910					-0.0200773156213927
SEFGAPIKF	9	Unmodified	_SEFGAPIKF_					0	0	0		nc|ENSG00000162643|Q8IWG1-2|DNAI3;ENSG00000162643|ENST00000294664|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	MULTI-SECPEP	A375_MHC_IP_R1	1	498.66357421875	2	498.263468	994.512382	-0.51404	-0.00025613	0.87177	0.00043437	0.35774	0.00017825	498.2638745018299	80.814	0.55931	80.814	80.592	81.151	0					17	10	2	0	0	0	0.41434	1	29542	29542		39.95	24.103	1	1695500			46975	6572	34184	34455	45911	45911					0.014906690402312961
SEFGIPKKT	9	Unmodified	_SEFGIPKKT_					0	0	0		ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B	ENSG00000077097|ENST00000264331|TOP2B	ENSG00000077097|ENST00000264331|TOP2B	MULTI-SECPEP	A375_MHC_IP_R1	1	504.18157958984375	2	503.782025	1005.5495	-0.46763	-0.00023558	-1.293	-0.00065139	-1.7606	-0.00088698	503.78196500779035	27.514	0.80885	27.514	27.027	27.836	0					29	15	3	0	0	0	0.26374	1	8359	8359		55.235	29.835	1	7779000			46976	1646	34185	34456	45912	45912					0.04694340586001999
SEFGIPKKT	9	Unmodified	_SEFGIPKKT_					0	0	0		ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B	ENSG00000077097|ENST00000264331|TOP2B	ENSG00000077097|ENST00000264331|TOP2B	MULTI-SECPEP	A375_MHC_IP_R2	2	504.18157958984375	2	503.782025	1005.5495	-0.88879	-0.00044776	-1.0406	-0.00052424	-1.9294	-0.000972	503.7821390654309	26.886	0.96942	27.546	27.008	27.977	0.65992					23	15	2	0	0	0	0.09145	1	9132	9132		69.338	43.939	1	8648500			46977	1646	34185	34456	45913	45913					0.04694340586001999
SEFGKESTF	9	Unmodified	_SEFGKESTF_					0	0	0		nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	MULTI-MSMS	A375_MHC_IP_R1	1	516.7214965820312	2	516.237647	1030.46074	-0.75149	-0.00038795	-0.2517	-0.00012993	-1.0032	-0.00051788	516.2377256588502	39.627	0.50513	39.627	39.391	39.896	0					23	9	3	0	0	0	0.34064	2	13606	13606;13624		27.629	3.6082	1	6072500			46978	8503	34186	34457	45914;45915	45914					-0.053271194443368586
SEFGKESTF	9	Unmodified	_SEFGKESTF_					0	0	0		nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	MULTI-MSMS	A375_MHC_IP_R2	2	516.6788940429688	2	516.237647	1030.46074	-1.0246	-0.00052892	-0.39511	-0.00020397	-1.4197	-0.00073289	516.23762351258	38.825	0.66473	39.599	39.3	39.965	0.77451					21	12	2	0	0	0	0.46465	1	14265	14265		21.537	3.3906	1	5805600			46979	8503	34186	34457	45916	45916					-0.053271194443368586
SEFGNHYLY	9	Unmodified	_SEFGNHYLY_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	A375_MHC_IP_R1	1	565.7073974609375	2	565.251089	1128.48762	-0.42484	-0.00024014	0.030736	1.7374E-05	-0.39411	-0.00022277	565.2510580884036	59.168	0.91576	59.168	58.836	59.752	0					48	17	4	0	0	0	0.0099105	2	21313	21249;21313		118.89	89.813	1	40616000			46980	8958	34187	34458	45917;45918	45918					-0.07148010833134322
SEFGNHYLY	9	Unmodified	_SEFGNHYLY_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	A375_MHC_IP_R2	2	565.6507568359375	2	565.251089	1128.48762	-0.76376	-0.00043172	-0.1042	-5.89E-05	-0.86796	-0.00049062	565.2509811419059	58.362	1.2192	59.111	58.779	59.998	0.74894					55	23	4	0	0	0	0.0019764	2	22060	22060;22093		144.35	104.4	1	40549000			46981	8958	34187	34458	45919;45920	45919					-0.07148010833134322
SEFGRNYSL	9	Unmodified	_SEFGRNYSL_					0	0	0		ENSG00000131788|ENST00000393045|PIAS3	ENSG00000131788|ENST00000393045|PIAS3	ENSG00000131788|ENST00000393045|PIAS3	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1560668945312	2	536.756538	1071.49852	-0.60849	-0.00032661	0.019513	1.0474E-05	-0.58898	-0.00031614	536.7563621206774	50.069	0.46125	50.069	49.793	50.254	0					17	8	3	0	0	0	0.10495	1	17733	17733		74.2	47.316	1	4889000			46982	4352	34188	34459	45921	45921					-0.03436608458855517
SEFGSPGLLTY	11	Unmodified	_SEFGSPGLLTY_					0	0	0		ENSG00000130479|ENST00000324096|MAP1S;ENST00000601544.5_1_19:17830311-17836711:+|nuORF;ENST00000597681.1_1_19:17830311-17838159:+|nuORF	ENSG00000130479|ENST00000324096|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	MULTI-MSMS	A375_MHC_IP_R1	1	586.2090454101562	2	585.787504	1169.56045	-0.0073557	-4.3089E-06	0.090283	5.2887E-05	0.082928	4.8578E-05	585.7875696667985	108.86	0.81082	108.86	108.41	109.22	0					41	15	4	0	0	0	0.00075349	3	39994	39855;39873;39994		107.19	65.347	1	10420000			46983	4246	34189	34460	45922;45923;45924	45924					-0.01754301830374061
SEFGSPGLLTY	11	Unmodified	_SEFGSPGLLTY_					0	0	0		ENSG00000130479|ENST00000324096|MAP1S;ENST00000601544.5_1_19:17830311-17836711:+|nuORF;ENST00000597681.1_1_19:17830311-17838159:+|nuORF	ENSG00000130479|ENST00000324096|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	MULTI-SECPEP	A375_MHC_IP_R2	2	585.760498046875	2	585.787504	1169.56045	-0.52447	-0.00030723	0.29925	0.0001753	-0.22522	-0.00013193	585.7876992726323	108.12	0.86818	108.87	108.46	109.32	0.75436					44	16	4	0	0	0	0.04068	1	40876	40876		134.3	76.824	1	12408000			46984	4246	34189	34460	45925	45925					-0.01754301830374061
SEFIDSQRVW	10	Unmodified	_SEFIDSQRVW_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000572445.1_1_17:1564459-1565038:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R1	1	634.2091064453125	2	633.809302	1265.60405	-0.69526	-0.00044066	0.33419	0.00021181	-0.36107	-0.00022885	633.8094836694668	75.968	1.5167	75.968	75.413	76.93	0					73	29	4	0	0	0	2.8699E-05	2	27618	27618;28035		160.69	75.048	1	74345000			46985	7864	34190	34461	45926;45927	45926					-0.018126923332374645
SEFIDSQRVW	10	Unmodified	_SEFIDSQRVW_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000572445.1_1_17:1564459-1565038:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R2	2	634.2086181640625	2	633.809302	1265.60405	-0.82814	-0.00052489	0.063028	3.9948E-05	-0.76512	-0.00048494	633.8093293624356	75.309	1.3699	76.05	75.624	76.993	0.74041					66	26	4	0	0	0	2.8699E-05	2	28509	28509;28778		160.69	75.048	1	77511000			46986	7864	34190	34461	45928;45929	45928					-0.018126923332374645
SEFIINNRNY	10	Unmodified	_SEFIINNRNY_					0	0	0		ENSG00000081386|ENST00000223428|ZNF510	ENSG00000081386|ENST00000223428|ZNF510	ENSG00000081386|ENST00000223428|ZNF510	MULTI-SECPEP	A375_MHC_IP_R1	1	635.7135620117188	2	635.314751	1268.61495	-0.54961	-0.00034917	0.24569	0.00015609	-0.30392	-0.00019308	635.3146678157839	56.4	0.45611	56.4	56.092	56.548	0					20	8	3	0	0	0	0.22459	1	20192	20192		66.457	52.051	1	3961700			46987	1738	34191	34462	45930	45930					-0.008612899589479639
SEFIINNRNY	10	Unmodified	_SEFIINNRNY_					0	0	0		ENSG00000081386|ENST00000223428|ZNF510	ENSG00000081386|ENST00000223428|ZNF510	ENSG00000081386|ENST00000223428|ZNF510	MULTI-MSMS	A375_MHC_IP_R2	2	635.7139282226562	2	635.314751	1268.61495	-0.86642	-0.00055045	-0.49588	-0.00031504	-1.3623	-0.00086549	635.3142853599528	55.619	0.45631	56.37	56.135	56.591	0.75075					18	8	3	0	0	0	0.0062475	1	21021	21021		103.42	68.487	1	3706800			46988	1738	34191	34462	45931	45931					-0.008612899589479639
SEFILACQQMT	11	Unmodified	_SEFILACQQMT_					0	0	0		nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1;ENST00000530397.1_1_1:95293042-95354234:+|nuORF;nc|ENSG00000143036|Q8N4M1-5|SLC44A3;nc|ENSG00000143036|Q8N4M1-4|SLC44A3;nc|ENSG00000143036|Q8N4M1-2|SLC44A3;nc|ENSG00000143036|Q8N4M1-3|SLC44A3;nc|ENSG00000143036|Q8N4M1-6|SLC44A3;ENSG00000143036|ENST00000271227|SLC44A3	nc|ENSG00000070214|Q8WWI5-3|SLC44A1;ENST00000530397.1_1_1:95293042-95354234:+|nuORF	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	MSMS	A375_MHC_IP_R1	1	635.7135620117188	2	635.793949	1269.57334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.369	1	56.369	55.869	56.869	0								0	0	0	0.15541	1	20192	20192		17.113	1.2657	1				46989	1489;5342	34192	34463	45932	45932					-0.05065930034174926
SEFKAMDSI	9	Unmodified	_SEFKAMDSI_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-SECPEP	A375_MHC_IP_R1	1	514.6417236328125	2	514.241875	1026.4692	-0.44433	-0.00022849	-0.28929	-0.00014877	-0.73362	-0.00037726	514.241730614283	57.003	0.56065	57.003	56.753	57.313	0					23	10	3	0	0	0	0.038931	1	20433	20433		100.09	45.317	1	4097500			46990	1184	34193	34464	45933	45933					-0.042978887993513126
SEFKAMDSI	9	Unmodified	_SEFKAMDSI_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	A375_MHC_IP_R2	2	514.6414184570312	2	514.241875	1026.4692	-1.0314	-0.00053041	-0.26208	-0.00013477	-1.2935	-0.00066518	514.2417483751997	56.24	0.6644	56.99	56.642	57.306	0.75014					28	12	3	0	0	0	0.0099638	1	21238	21238		121.35	57.11	1	5393800			46991	1184	34193	34464	45934	45934					-0.042978887993513126
SEFKEEMSY	9	Unmodified	_SEFKEEMSY_					0	0	0			REV__nc|ENSG00000106823|O94769-2|ECM2	REV__nc|ENSG00000106823|O94769-2|ECM2	MSMS	A375_MHC_IP_R1	1	575.1649780273438	2	575.242072	1148.46959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.015	1	69.015	68.515	69.515	0								0	0	0	0.15486	1	25037	25037		12.532	0	1		+		46992	17468	34194	34465	45935	45935					-0.09870513870146169
SEFKEFSQSF	10	Unmodified	_SEFKEFSQSF_					0	0	0		nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	MULTI-MSMS	A375_MHC_IP_R1	1	618.2240600585938	2	618.282586	1234.55062	0.10618	6.5648E-05	0.14245	8.8073E-05	0.24863	0.00015372	618.2828690866442	69.679	0.40376	69.679	69.478	69.882	0					17	7	3	0	0	0	3.2914E-05	2	25267	25267;25303		171.46	105.01	1	2546700			46993	3428	34195	34466	45936;45937	45936					-0.05727489835749111
SEFKEFSQSF	10	Unmodified	_SEFKEFSQSF_					0	0	0		nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	MULTI-MSMS	A375_MHC_IP_R2	2	618.6831665039062	2	618.282586	1234.55062	-0.57379	-0.00035476	1.7585	0.0010873	1.1847	0.00073249	618.2852379292943	69.03	0.9113	69.765	69.121	70.032	0.73511					29	17	3	0	0	0	0.011507	1	26160	26160		118.21	52.736	1	2114000			46994	3428	34195	34466	45938	45938					-0.05727489835749111
SEFKFWFC	8	Unmodified	_SEFKFWFC_					0	0	0		nc|ENSG00000196668|Q6ZV60|LINC00173	nc|ENSG00000196668|Q6ZV60|LINC00173	nc|ENSG00000196668|Q6ZV60|LINC00173	MULTI-MSMS	A375_MHC_IP_R1	1	547.223876953125	2	547.244221	1092.47389	-0.54191	-0.00029656	-0.15503	-8.4842E-05	-0.69694	-0.0003814	547.2443252610192	73.665	0.96239	73.665	73.386	74.349	0					37	18	3	0	0	0	0.77717	1	26727	26727		5.2307	5.2307	1	6631700			46995	14838	34196	34467	45939	45939					-0.06864959865924902
SEFKQLFFKLE	11	Unmodified	_SEFKQLFFKLE_					0	0	0			REV__ENSG00000135175|ENST00000257627|OCM2	REV__ENSG00000135175|ENST00000257627|OCM2	MULTI-MSMS	A375_MHC_IP_R1	1	472.9902038574219	3	472.590494	1414.74965	-0.49482	-0.00023385	-0.51992	-0.00024571	-1.0147	-0.00047955	472.59024602173366	28.217	0.75824	28.217	28.037	28.795	0					29	14	3	0	0	0	0.7328	1	8693	8693		6.2344	6.2344	1	5722600	+		46996	18212	34197	34468	45940	45940					0.05886770462939239
SEFKQLFFKLE	11	Unmodified	_SEFKQLFFKLE_					0	0	0			REV__ENSG00000135175|ENST00000257627|OCM2	REV__ENSG00000135175|ENST00000257627|OCM2	MULTI-MSMS	A375_MHC_IP_R2	2	472.9897766113281	3	472.590494	1414.74965	-0.5465	-0.00025827	-0.87604	-0.00041401	-1.4225	-0.00067228	472.59020735031424	27.547	0.81182	28.225	27.996	28.808	0.67857					31	15	3	0	0	0	0.7328	1	9439	9439		6.2344	6.2344	1	5688000	+		46997	18212	34197	34468	45941	45941					0.05886770462939239
SEFLKEEKL	9	Unmodified	_SEFLKEEKL_					0	0	0		nc|ENSG00000090686|Q86UV5-4|USP48;nc|ENSG00000090686|Q86UV5-7|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48	nc|ENSG00000090686|Q86UV5-4|USP48	nc|ENSG00000090686|Q86UV5-4|USP48	MULTI-SECPEP	A375_MHC_IP_R1	1	561.1380004882812	2	561.805697	1121.59684	-0.46844	-0.00026317	-0.092109	-5.1747E-05	-0.56055	-0.00031492	561.8055125031341	37.753	0.25562	37.753	37.607	37.862	0					6	4	2	0	0	0	0.65246	1	12750	12750		10.824	0	1	698540			46998	1959	34198	34469	45942	45942					0.04090575066334168
SEFLKQAW	8	Unmodified	_SEFLKQAW_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000468639.5_1_9:75766818-75774345:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-SECPEP	A375_MHC_IP_R1	1	505.1611328125	2	504.761092	1007.50763	-0.75978	-0.00038351	0.23094	0.00011657	-0.52884	-0.00026694	504.76123227864446	67.873	0.60776	67.873	67.5	68.108	0					26	11	3	0	0	0	0.22517	1	24582	24582		88.954	88.954	1	3275800			46999	4636	34199	34470	45943	45943					0.004177848974677545
SEFLPSSGGTF	11	Unmodified	_SEFLPSSGGTF_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-SECPEP	A375_MHC_IP_R2	2	565.163330078125	2	564.764029	1127.5135	-0.26078	-0.00014728	-0.3077	-0.00017378	-0.56847	-0.00032105	564.7639159850734	94.414	0.40538	95.159	94.869	95.274	0.74473					14	7	2	0	0	0	0.71172	1	35848	35848		38.176	5.8701	1	1570900			47000	5020	34200	34471	45944	45944					-0.045151613815278324
SEFLQPNRQF	10	Unmodified	_SEFLQPNRQF_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MSMS	A375_MHC_IP_R1	1	633.7158813476562	2	633.317294	1264.62004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.736	1	60.736	60.236	61.236	0								0	0	0	0.027481	1	21872	21872		69.105	23.405	1				47001	2985	34201	34472	45945	45945					-0.001689860963551837
SEFLQPNRQF	10	Unmodified	_SEFLQPNRQF_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	A375_MHC_IP_R2	2	633.7166137695312	2	633.317294	1264.62004	-1.1564	-0.00073239	0.23447	0.00014849	-0.92196	-0.00058389	633.3174354162854	59.758	0.50551	60.505	60.349	60.855	0.74714					14	9	2	0	0	0	0.0097732	1	22659	22659		92.653	43.099	1	1759700			47002	2985	34201	34472	45946	45946					-0.001689860963551837
SEFLREWEAQ	10	Unmodified	_SEFLREWEAQ_					0	0	0		ENST00000482193.1_1_3:49449826-49450370:+|nuORF;ENST00000487432.1_1_3:49449811-49450417:+|nuORF;ENSG00000145022|ENST00000273590|TCTA;ENST00000493381.1_1_3:49449841-49450177:+|nuORF;ENST00000488385.1_1_3:49449757-49450544:+|nuORF	ENST00000482193.1_1_3:49449826-49450370:+|nuORF	ENST00000482193.1_1_3:49449826-49450370:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	648.06005859375	2	647.806759	1293.59897	-0.65314	-0.00042311	-0.064523	-4.1799E-05	-0.71766	-0.00046491	647.8062097453551	76.054	0.35336	76.794	76.64	76.994	0.74052					9	6	2	0	0	0	0.85215	1	28940	28940		22.658	1.1211	1	738600			47003	5534	34202	34473	45947	45947					-0.03608996195839609
SEFNDSLKKI	10	Unmodified	_SEFNDSLKKI_					0	0	0		ENSG00000162441|ENST00000377223|LZIC;nc|ENSG00000162441|Q8WZA0-2|LZIC	ENSG00000162441|ENST00000377223|LZIC	ENSG00000162441|ENST00000377223|LZIC	MULTI-MSMS	A375_MHC_IP_R1	1	394.6115417480469	3	394.211794	1179.61355	-0.17663	-6.9631E-05	0.014638	5.7703E-06	-0.162	-6.3861E-05	394.2118337579612	41.102	0.50492	41.102	40.863	41.368	0					24	8	5	0	0	0	0.080535	1	14182	14182		59.013	33.016	1	5555500			47004	6536	34203	34474	45948	45948					0.030930759523016604
SEFNDSLKKI	10	Unmodified	_SEFNDSLKKI_					0	0	0		ENSG00000162441|ENST00000377223|LZIC;nc|ENSG00000162441|Q8WZA0-2|LZIC	ENSG00000162441|ENST00000377223|LZIC	ENSG00000162441|ENST00000377223|LZIC	MULTI-MSMS	A375_MHC_IP_R2	2	394.61163330078125	3	394.211794	1179.61355	-0.22368	-8.8176E-05	0.33423	0.00013176	0.11055	4.358E-05	394.21171511809536	40.313	0.60797	41.088	40.727	41.335	0.77451					21	11	3	0	0	0	0.080535	1	14928	14928		51.765	18.867	1	4263700			47005	6536	34203	34474	45949	45949					0.030930759523016604
SEFPDVKIL	9	Unmodified	_SEFPDVKIL_					0	0	0		ENSG00000138600|ENST00000261854|SPPL2A;ENST00000560288.1_1_15:51040303-51057772:-|nuORF;ENST00000560489.2_1_15:49658263-49658881:-|nuORF	ENSG00000138600|ENST00000261854|SPPL2A	ENSG00000138600|ENST00000261854|SPPL2A	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6892700195312	2	524.289682	1046.56481	-0.63332	-0.00033204	-2.2213	-0.0011646	-2.8547	-0.0014967	524.2897506237202	94.887	0.86646	94.887	94.446	95.312	0					49	16	5	0	0	0	0.11849	1	34894	34894		70.332	37.546	1	5582900			47006	5004	34204	34475	45950	45950					0.04339207383191024
SEFPGAQHY	9	Unmodified	_SEFPGAQHY_					0	0	0		ENST00000566509.5_1_15:73052730-73067416:-|nuORF;nc|ENSG00000159322|Q9BRR6-5|ADPGK;ENST00000567941.5_1_15:73044684-73075795:-|nuORF;nc|ENSG00000159322|Q9BRR6-2|ADPGK;ENSG00000159322|ENST00000456471|ADPGK	ENST00000566509.5_1_15:73052730-73067416:-|nuORF	ENST00000566509.5_1_15:73052730-73067416:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	518.1846313476562	2	518.230156	1034.44576	-0.76343	-0.00039563	0.27745	0.00014378	-0.48598	-0.00025185	518.2302015178964	36.82	1.3183	36.82	35.982	37.301	0					59	25	4	0	0	0	0.72985	1	12204	12204		4.3292	4.3292	1	75676000			47007	6364	34205	34476	45951	45951					-0.07008566521653847
SEFPGRTF	8	Unmodified	_SEFPGRTF_					0	0	0		ENST00000474221.5_1_11:293333-294746:+|nuORF;ENST00000476372.1_1_11:293373-294746:+|nuORF;ENSG00000142102|ENST00000409548|PGGHG	ENST00000474221.5_1_11:293333-294746:+|nuORF	ENST00000474221.5_1_11:293333-294746:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	471.12945556640625	2	470.729792	939.445031	-0.45241	-0.00021296	-0.049209	-2.3164E-05	-0.50162	-0.00023613	470.7297197483771	47.662	1.2179	48.423	47.715	48.933	0.76128					38	23	2	0	0	0	0.81376	1	17867	17867		32.305	0	1	2131500			47008	5288	34206	34477	45952	45952					-0.027113611707022756
SEFPGSASL	9	Unmodified	_SEFPGSASL_					0	0	0			REV__ENSG00000132963|ENST00000380842|POMP	REV__ENSG00000132963|ENST00000380842|POMP	MULTI-SECPEP	A375_MHC_IP_R2	2	894.8206176757812	1	894.420339	893.413062	-0.64162	-0.00057388	0.86712	0.00077557	0.2255	0.00020169	894.4206965967808	51.385	0.35524	52.137	51.915	52.27	0.75225					9	6	2	0	0	0	0.50702	1	19329	19329		32.305	1.6689	1	1839100	+		47009	18696	34207	34478	45953	45953					-0.03790773644516321
SEFPGSASL	9	Unmodified	_SEFPGSASL_					0	0	0			REV__ENSG00000132963|ENST00000380842|POMP	REV__ENSG00000132963|ENST00000380842|POMP	MULTI-MATCH	A375_MHC_IP_R1	1		1	894.420339	893.413062	-0.088459	-7.912E-05	-0.09137	-8.1723E-05	-0.17983	-0.00016084	894.4204357583567	51.978	0.45848	51.978	51.778	52.237	0	-0.079562	-0.00031046	NaN	32.305	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1566900	+		47010	18696	34207	34478							-0.03790773644516321
SEFPKPQIL	9	Unmodified	_SEFPKPQIL_					0	0	0		nc|ENSG00000138496|Q8IXQ6|PARP9;nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9	nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6|PARP9	MULTI-SECPEP	A375_MHC_IP_R1	1	530.1972045898438	2	529.797675	1057.5808	-0.57273	-0.00030343	-1.1068	-0.00058639	-1.6795	-0.00088982	529.797603924532	73.982	1.3176	73.982	73.437	74.754	0					72	25	5	0	0	0	0.053904	1	26876	26876		74.929	47.3	1	12589000			47011	14635	34208	34479	45954	45954					0.054309136201027286
SEFPKPQIL	9	Unmodified	_SEFPKPQIL_					0	0	0		nc|ENSG00000138496|Q8IXQ6|PARP9;nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9	nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6|PARP9	MULTI-SECPEP	A375_MHC_IP_R2	2	529.64599609375	2	529.797675	1057.5808	-0.57044	-0.00030222	-0.40176	-0.00021285	-0.9722	-0.00051507	529.7976119662573	73.102	1.0701	73.838	73.429	74.499	0.7354					45	20	3	0	0	0	0.037185	1	27779	27779		85.272	45.315	1	9731800			47012	14635	34208	34479	45955	45955					0.054309136201027286
SEFPSKSITF	10	Unmodified	_SEFPSKSITF_					0	0	0		PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant;nc|ENSG00000118482|Q92576-2|PHF3;ENSG00000118482|ENST00000262043|PHF3	PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant	PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	571.1727294921875	2	571.790047	1141.56554	0.047353	2.7076E-05	0.31029	0.00017742	0.35764	0.0002045	571.7901626657691	70.026	0.96438	70.026	69.427	70.392	0					28	18	2	0	0	0	0.75488	1	25314	25314		23.79	15.044	1	1614500			47013	3542	34209	34480	45956	45956					0.0004200203222808341
SEFPYIEAEVN	11	Unmodified	_SEFPYIEAEVN_					0	0	0		ENST00000587908.1_1_19:56831578-56832375:-|nuORF	ENST00000587908.1_1_19:56831578-56832375:-|nuORF	ENST00000587908.1_1_19:56831578-56832375:-|nuORF	MSMS	A375_MHC_IP_R2	2	433.2854309082031	3	433.203076	1296.5874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.845	1	31.564	31.064	32.064	0.71857								0	0	0	0.16191	1	10869	10869		4.4062	0	1				47014	13751	34210	34481	45957	45957					-0.04903238009865163
SEFQALGYFS	10	Unmodified	_SEFQALGYFS_					0	0	0		ENST00000427810.6_1_11:3392926-3398995:-|nuORF;ENST00000429541.6_1_11:3392284-3398995:-|nuORF	ENST00000427810.6_1_11:3392926-3398995:-|nuORF	ENST00000427810.6_1_11:3392926-3398995:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	575.1358032226562	2	574.766571	1147.51859	-0.11038	-6.344E-05	-0.47533	-0.00027321	-0.58571	-0.00033665	574.7661931493242	52.016	0.81229	52.016	51.575	52.387	0					20	14	2	0	0	0	0.75488	1	18524	18524		29.841	8.3036	1	3670100			47015	11828	34211	34482	45958	45958					-0.049268575188989416
SEFQKAVKL	9	Unmodified	_SEFQKAVKL_					0	0	0		ENSG00000134109|ENST00000256497|EDEM1;nc|ENSG00000134109|Q92611-2|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	MULTI-SECPEP	A375_MHC_IP_R1	1	525.7026977539062	2	525.303124	1048.5917	-0.26461	-0.000139	-0.49696	-0.00026106	-0.76157	-0.00040006	525.3027394054039	35.723	0.71252	35.723	35.472	36.184	0					16	7	3	0	0	0	0.021951	1	11920	11920		114.19	64.253	1	4401500			47016	4550	34212	34483	45959	45959					0.06934315994362805
SEFQKAVKL	9	Unmodified	_SEFQKAVKL_					0	0	0		ENSG00000134109|ENST00000256497|EDEM1;nc|ENSG00000134109|Q92611-2|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	MULTI-SECPEP	A375_MHC_IP_R2	2	525.7026977539062	2	525.303124	1048.5917	-0.69193	-0.00036348	-0.34663	-0.00018209	-1.0386	-0.00054556	525.3029415973405	34.847	0.45451	35.611	35.324	35.778	0.76338					15	7	3	0	0	0	0.43207	1	12604	12604		27.223	19.068	1	4341500			47017	4550	34212	34483	45960	45960					0.06934315994362805
SEFRAGVSVY	10	Unmodified	_SEFRAGVSVY_					0	0	0		ENST00000511963.5_1_5:10286382-10290874:-|nuORF;ENSG00000164237|ENST00000296658|CMBL	ENST00000511963.5_1_5:10286382-10290874:-|nuORF	ENST00000511963.5_1_5:10286382-10290874:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	558.221435546875	2	557.780013	1113.54547	-0.53658	-0.0002993	-0.43054	-0.00024015	-0.96713	-0.00053944	557.7799734498145	52.306	0.45587	52.306	52.136	52.592	0					18	8	3	0	0	0	0.26783	2	18607	18607;18627		42.312	9.5268	1	2936100			47018	6806	34213	34484	45961;45962	45961					-0.006757489077017453
SEFRAGVSVY	10	Unmodified	_SEFRAGVSVY_					0	0	0		ENST00000511963.5_1_5:10286382-10290874:-|nuORF;ENSG00000164237|ENST00000296658|CMBL	ENST00000511963.5_1_5:10286382-10290874:-|nuORF	ENST00000511963.5_1_5:10286382-10290874:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	558.2212524414062	2	557.780013	1113.54547	-0.99528	-0.00055515	0.59624	0.00033257	-0.39905	-0.00022258	557.7801991828826	51.645	0.45692	52.398	52.169	52.626	0.75225					13	8	2	0	0	0	0.71464	1	19406	19406		33.445	16.332	1	2152300			47019	6806	34213	34484	45963	45963					-0.006757489077017453
SEFRDESQY	9	Unmodified	_SEFRDESQY_					0	0	0		ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-3|PREX1	ENSG00000124126|ENST00000371941|PREX1	ENSG00000124126|ENST00000371941|PREX1	MSMS	A375_MHC_IP_R2	2	580.6513061523438	2	580.746367	1159.47818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.204	1	96.954	96.454	97.454	0.75045								0	0	0	0.15486	1	36530	36530		10.824	0.64053	1				47020	3870	34214	34485	45964	45964					-0.09517823909322942
SEFRPSGELF	10	Unmodified	_SEFRPSGELF_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1;ENST00000585839.5_1_19:14578398-14580330:+|nuORF	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-MSMS	A375_MHC_IP_R1	1	584.7286376953125	2	584.785296	1167.55604	-0.25581	-0.00014959	0.15559	9.0987E-05	-0.10022	-5.8607E-05	584.7853384537749	73.883	0.65794	73.883	73.539	74.197	0					27	12	4	0	0	0	0.28986	1	26858	26858		40.725	23.612	1	5211100			47021	3829	34215	34486	45965	45965					-0.021037662532762624
SEFRPSGELF	10	Unmodified	_SEFRPSGELF_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1;ENST00000585839.5_1_19:14578398-14580330:+|nuORF	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-SECPEP	A375_MHC_IP_R2	2	585.1853637695312	2	584.785296	1167.55604	-0.47613	-0.00027843	0.11741	6.866E-05	-0.35872	-0.00020977	584.7854329964248	73.073	0.66186	73.808	73.48	74.141	0.7354					24	12	3	0	0	0	0.19767	1	27722	27722		78.06	78.06	1	5314100			47022	3829	34215	34486	45966	45966					-0.021037662532762624
SEFRSSIPVY	10	Unmodified	_SEFRSSIPVY_					0	0	0		nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3	nc|ENSG00000091490|Q68CR1-2|SEL1L3	nc|ENSG00000091490|Q68CR1-2|SEL1L3	MULTI-SECPEP	A375_MHC_IP_R1	1	593.2003784179688	2	592.800946	1183.58734	-0.38	-0.00022526	0.059165	3.5073E-05	-0.32083	-0.00019019	592.8005247970283	64.247	0.40514	64.247	64.09	64.495	0					11	7	2	0	0	0	0.8866	1	23264	23264		14.405	5.0223	1	1441000			47023	1980	34216	34487	45967	45967					0.002888067808271444
SEFRVGQTPSY	11	Unmodified	_SEFRVGQTPSY_					0	0	0			REV__nc|ENSG00000128581|Q9H7X7-2|IFT22	REV__nc|ENSG00000128581|Q9H7X7-2|IFT22	MULTI-MSMS	A375_MHC_IP_R1	1	636.2068481445312	2	635.806759	1269.59897	-0.45598	-0.00028991	0.23186	0.00014742	-0.22412	-0.0001425	636.3083097041174	70.186	0.25583	70.186	70.085	70.341	0					6	4	2	0	0	0	0.72494	1	25503	25503		13.615	4.2317	1	1038400	+		47024	27217	34217	34488	45968	45968					-0.025049961958302447
SEFSDKEEF	9	Unmodified	_SEFSDKEEF_					0	0	0			REV__tr|U7SVJ4|U7SVJ4_FUSNUMiaB-liketRNAmodifyingenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01249PE=4SV=1	REV__tr|U7SVJ4|U7SVJ4_FUSNUMiaB-liketRNAmodifyingenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01249PE=4SV=1	MSMS	A375_MHC_IP_R1	1	559.2642211914062	2	559.237844	1116.46113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.85	1	76.85	76.35	77.35	0								0	0	0	0.15486	1	28021	28021		11.64	3.7301	1		+		47025	28594	34218	34489	45969	45969					-0.09243744515129038
SEFSVKRRF	9	Unmodified	_SEFSVKRRF_					0	0	0		ENSG00000205302|ENST00000379516|SNX2;nc|ENSG00000205302|O60749-2|SNX2;ENST00000505854.5_1_5:122110798-122139331:+|nuORF	ENSG00000205302|ENST00000379516|SNX2	ENSG00000205302|ENST00000379516|SNX2	MULTI-SECPEP	A375_MHC_IP_R1	1	385.9359436035156	3	385.88049	1154.61964	-0.036588	-1.4119E-05	-0.39321	-0.00015173	-0.42979	-0.00016585	385.88023029415024	25.991	0.55684	25.991	25.816	26.373	0					14	10	2	0	0	0	0.73926	1	7732	7732		8.9762	4.2603	1	5355100			47026	9506	34219	34490	45970	45970					0.04851638974469097
SEFSVKRRF	9	Unmodified	_SEFSVKRRF_					0	0	0		ENSG00000205302|ENST00000379516|SNX2;nc|ENSG00000205302|O60749-2|SNX2;ENST00000505854.5_1_5:122110798-122139331:+|nuORF	ENSG00000205302|ENST00000379516|SNX2	ENSG00000205302|ENST00000379516|SNX2	MULTI-SECPEP	A375_MHC_IP_R2	2	385.9361572265625	3	385.88049	1154.61964	-0.56803	-0.00021919	0.73168	0.00028234	0.16364	6.3147E-05	385.8807285964718	25.409	0.66109	26.053	25.619	26.28	0.64368					20	12	2	0	0	0	0.73926	1	8526	8526		12.873	5.2637	1	3962800			47027	9506	34219	34490	45971	45971					0.04851638974469097
SEFTGTHYI	9	Unmodified	_SEFTGTHYI_					0	0	0		ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	MULTI-MSMS	A375_MHC_IP_R1	1	528.744873046875	2	527.745639	1053.47673	-0.55106	-0.00029082	1.1676	0.0006162	0.61654	0.00032538	527.7464779787836	50.503	0.56307	50.503	50.049	50.613	0					26	10	4	0	0	0	0.4867	1	17879	17879		20.454	3.5113	1	3508400			47028	4646	34220	34491	45972	45972					-0.047874132074412046
SEFTGTHYI	9	Unmodified	_SEFTGTHYI_					0	0	0		ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	MULTI-MSMS	A375_MHC_IP_R2	2	528.1458129882812	2	527.745639	1053.47673	-0.77965	-0.00041146	1.0792	0.00056955	0.29955	0.00015809	527.7464034022152	49.768	0.60996	50.522	50.092	50.702	0.75406					18	11	2	0	0	0	0.03063	1	18674	18674		74.423	32.328	1	3283200			47029	4646	34220	34491	45973	45973					-0.047874132074412046
SEFTGVWKY	9	Unmodified	_SEFTGVWKY_					0	0	0		ENST00000505526.1_1_5:271863-311637:+|nuORF;nc|ENSG00000249915|O75340-2|PDCD6;ENSG00000249915|ENST00000264933|PDCD6	ENST00000505526.1_1_5:271863-311637:+|nuORF	ENST00000505526.1_1_5:271863-311637:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	558.135009765625	2	558.771657	1115.52876	-0.52897	-0.00029557	0.19833	0.00011082	-0.33064	-0.00018475	558.7717171482641	75.738	1.5677	75.738	75.362	76.93	0					79	30	4	0	0	0	0.010878	1	27539	27539		171.09	128.99	1	190430000			47030	9843	34221	34492	45974	45974					-0.024382497936585423
SEFTGVWKY	9	Unmodified	_SEFTGVWKY_					0	0	0		ENST00000505526.1_1_5:271863-311637:+|nuORF;nc|ENSG00000249915|O75340-2|PDCD6;ENSG00000249915|ENST00000264933|PDCD6	ENST00000505526.1_1_5:271863-311637:+|nuORF	ENST00000505526.1_1_5:271863-311637:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	559.171142578125	2	558.771657	1115.52876	-0.75307	-0.00042079	0.1672	9.3425E-05	-0.58587	-0.00032737	558.7717277316784	75.041	1.8312	75.779	75.416	77.247	0.73752					94	35	4	0	0	0	0.0085749	4	28398	28398;28405;28443;28628		171.09	105.85	1	149900000			47031	9843	34221	34492	45975;45976;45977;45978	45975					-0.024382497936585423
SEFVGKEAI	9	Unmodified	_SEFVGKEAI_					0	0	0		ENSG00000154265|ENST00000392676|ABCA5;nc|ENSG00000154265|Q8WWZ7-2|ABCA5	ENSG00000154265|ENST00000392676|ABCA5	ENSG00000154265|ENST00000392676|ABCA5	MULTI-MSMS	A375_MHC_IP_R1	1	490.658203125	2	490.258382	978.502212	-0.094199	-4.6182E-05	0.45711	0.0002241	0.36291	0.00017792	490.25842783743843	43.143	0.61002	43.143	42.841	43.451	0					24	11	3	0	0	0	0.014789	1	14983	14983		90.135	33.958	1	5120600			47032	6078	34222	34493	45979	45979					0.012100613150096251
SEFVGKEAI	9	Unmodified	_SEFVGKEAI_					0	0	0		ENSG00000154265|ENST00000392676|ABCA5;nc|ENSG00000154265|Q8WWZ7-2|ABCA5	ENSG00000154265|ENST00000392676|ABCA5	ENSG00000154265|ENST00000392676|ABCA5	MULTI-MSMS	A375_MHC_IP_R2	2	490.65802001953125	2	490.258382	978.502212	-0.48391	-0.00023724	0.216	0.0001059	-0.2679	-0.00013134	490.2583536124237	42.369	0.40868	43.141	42.91	43.319	0.7724					20	7	3	0	0	0	0.020087	1	15747	15747		83.429	24.75	1	6465500			47033	6078	34222	34493	45980	45980					0.012100613150096251
SEFVGRLPV	9	Unmodified	_SEFVGRLPV_					0	0	0		CLPX|p.P494S|1|0.39|ENSG00000166855|chr15:65154913-65154913|G/A|missense_variant	CLPX|p.P494S|1|0.39|ENSG00000166855|chr15:65154913-65154913|G/A|missense_variant	CLPX|p.P494S|1|0.39|ENSG00000166855|chr15:65154913-65154913|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	502.71807861328125	2	502.282192	1002.54983	-1.1007	-0.00055286	-0.53172	-0.00026708	-1.6324	-0.00081993	502.2818012046445	29.711	0.45247	30.41	30.236	30.688	0.69872					12	8	2	0	0	0	0.65246	1	10486	10486		10.824	10.824	1	2053300			47034	539	34223	34494	45981	45981					0.04865760305870026
SEFWLPDTF	9	Unmodified	_SEFWLPDTF_					0	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;ENST00000563441.5_1_15:75651254-75660924:-|nuORF;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;ENST00000563013.1_1_15:75653860-75654411:-|nuORF;ENST00000564785.5_1_15:75653860-75654842:-|nuORF;ENST00000563058.5_1_15:75653361-75654692:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-MSMS	A375_MHC_IP_R1	1	571.6632690429688	2	571.263665	1140.51278	-0.51383	-0.00029353	-0.1486	-8.489E-05	-0.66243	-0.00037842	571.7652214548782	131.7	0.20284	131.7	131.58	131.78	0					6	3	2	0	0	0	0.077132	1	50794	50794		54.774	35.517	1	5897400			47035	5152	34224	34495	45982	45982					-0.05185956030595662
SEFWLPDTF	9	Unmodified	_SEFWLPDTF_					0	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;ENST00000563441.5_1_15:75651254-75660924:-|nuORF;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;ENST00000563013.1_1_15:75653860-75654411:-|nuORF;ENST00000564785.5_1_15:75653860-75654842:-|nuORF;ENST00000563058.5_1_15:75653361-75654692:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-SECPEP	A375_MHC_IP_R2	2	571.6633911132812	2	571.263665	1140.51278	-0.27009	-0.00015429	-0.16456	-9.4009E-05	-0.43465	-0.0002483	571.263164532079	131.53	0.3063	131.72	131.54	131.85	0.18953					8	5	2	0	0	0	0.76187	1	51773	51773		7.2892	5.2295	1	5322900			47036	5152	34224	34495	45983	45983					-0.05185956030595662
SEFYEENY	8	Unmodified	_SEFYEENY_					0	0	0		ENSG00000162104|ENST00000294016|ADCY9	ENSG00000162104|ENST00000294016|ADCY9	ENSG00000162104|ENST00000294016|ADCY9	MULTI-MSMS	A375_MHC_IP_R2	2	542.2215576171875	2	540.711462	1079.40837	-0.73147	-0.00039552	0.14587	7.8872E-05	-0.58561	-0.00031664	540.7115757767788	68.213	0.66154	68.948	68.611	69.272	0.73512					33	12	4	0	0	0	0.77603	1	25841	25841		9.3474	0	1	6777900			47037	6507	34225	34496	45984	45984					-0.12815702577950105
SEFYKHIVL	9	Unmodified	_SEFYKHIVL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-SECPEP	A375_MHC_IP_R1	1	568.7103271484375	2	568.310949	1134.60735	-0.33187	-0.00018861	0.2628	0.00014935	-0.06907	-3.9253E-05	568.310723053665	60.224	0.3569	60.224	60.006	60.363	0					13	6	3	0	0	0	0.31606	1	21699	21699		47.749	32.91	1	1255800			47038	4950	34226	34497	45985	45985					0.04542602511401128
SEFYKHIVL	9	Unmodified	_SEFYKHIVL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MATCH	A375_MHC_IP_R2	2		2	568.310949	1134.60735	-0.76108	-0.00043253	-3.6373	-0.0020671	-4.3984	-0.0024997	569.3082311654371	59.253	0.35298	60.001	59.845	60.198	0.74714	-0.11162	-0.0042092	NaN	47.749	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1142600			47039	4950	34226	34497							0.04542602511401128
SEFYRDGKY	9	Unmodified	_SEFYRDGKY_					0	0	0		nc|ENSG00000111674|P09104-2|ENO2;ENSG00000111674|ENST00000229277|ENO2	nc|ENSG00000111674|P09104-2|ENO2	nc|ENSG00000111674|P09104-2|ENO2	MULTI-SECPEP	A375_MHC_IP_R1	1	389.24859619140625	3	388.848856	1163.52474	-0.13433	-5.2234E-05	0.08135	3.1633E-05	-0.05298	-2.0601E-05	388.8489120607381	26.567	0.40627	26.567	26.322	26.728	0					15	7	3	0	0	0	0.61758	1	7936	7936		21.59	12.614	1	5103500			47040	3014	34227	34498	45986	45986					-0.05048339287372983
SEFYRDGKY	9	Unmodified	_SEFYRDGKY_					0	0	0		nc|ENSG00000111674|P09104-2|ENO2;ENSG00000111674|ENST00000229277|ENO2	nc|ENSG00000111674|P09104-2|ENO2	nc|ENSG00000111674|P09104-2|ENO2	MULTI-MSMS	A375_MHC_IP_R2	2	583.1688232421875	2	582.769645	1163.52474	-0.83663	-0.00048756	0.91896	0.00053554	0.082329	4.7979E-05	582.7697555841494	25.939	0.35612	26.599	26.449	26.805	0.65992					14	6	3	0	0	0	0.063448	1	8776	8776		59.052	32.784	1	2495400			47041	3014	34227	34498	45987	45987					-0.05048339287372983
SEFYRDGKY	9	Unmodified	_SEFYRDGKY_					0	0	0		nc|ENSG00000111674|P09104-2|ENO2;ENSG00000111674|ENST00000229277|ENO2	nc|ENSG00000111674|P09104-2|ENO2	nc|ENSG00000111674|P09104-2|ENO2	MULTI-SECPEP	A375_MHC_IP_R2	2	389.58306884765625	3	388.848856	1163.52474	-0.58911	-0.00022907	0.26571	0.00010332	-0.3234	-0.00012575	389.1832288837722	25.967	0.40782	26.627	26.449	26.857	0.65992					13	7	2	0	0	0	0.76642	1	8760	8760		12.873	4.9272	1	5471000			47042	3014	34227	34498	45988	45988					-0.05048339287372983
SEFYRDGKY	9	Unmodified	_SEFYRDGKY_					0	0	0		nc|ENSG00000111674|P09104-2|ENO2;ENSG00000111674|ENST00000229277|ENO2	nc|ENSG00000111674|P09104-2|ENO2	nc|ENSG00000111674|P09104-2|ENO2	MULTI-MATCH	A375_MHC_IP_R1	1		2	582.769645	1163.52474	-0.55848	-0.00032546	0.70732	0.0004122	0.14884	8.674E-05	583.2716744316062	26.549	0.45651	26.549	26.271	26.728	0	-0.024542	-8.8982E-05	NaN	59.052	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3872900			47043	3014	34227	34498							-0.05048339287372983
SEGDEEEDDY	10	Unmodified	_SEGDEEEDDY_					0	0	0		ENSG00000110066|ENST00000304363|KMT5B;ENST00000441488.6_1_11:67925157-67938746:-|nuORF	ENSG00000110066|ENST00000304363|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	MULTI-SECPEP	A375_MHC_IP_R1	1	594.5964965820312	2	594.19657	1186.37859	-0.28404	-0.00016878	0.3584	0.00021296	0.074358	4.4183E-05	594.196947177853	62.26	0.51146	62.26	62.046	62.557	0					20	9	3	0	0	0	0.94421	1	22482	22482		0.40072	0.40072	1	2114600			47044	2916	34228	34499	45989	45989					-0.207147311045901
SEGDEEEDDY	10	Unmodified	_SEGDEEEDDY_					0	0	0		ENSG00000110066|ENST00000304363|KMT5B;ENST00000441488.6_1_11:67925157-67938746:-|nuORF	ENSG00000110066|ENST00000304363|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	MULTI-SECPEP	A375_MHC_IP_R2	2	594.59619140625	2	594.19657	1186.37859	-0.86413	-0.00051347	0.028776	1.7099E-05	-0.83536	-0.00049637	594.1965650243045	61.854	0.504	62.597	62.27	62.774	0.74263					15	9	2	0	0	0	0.94421	1	23479	23479		0.40072	0.40072	1	2051800			47045	2916	34228	34499	45990	45990					-0.207147311045901
SEGDITQKGY	10	Unmodified	_SEGDITQKGY_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B;nc|ENSG00000160305|Q14689-6|DIP2A;ENST00000549620.5_1_12:50898851-51072694:+|nuORF;ENSG00000151240|ENST00000280886|DIP2C;ENSG00000160305|ENST00000417564|DIP2A;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A	ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C;ENSG00000160305|ENST00000417564|DIP2A	ENSG00000066084|ENST00000301180|DIP2B	MULTI-MSMS	A375_MHC_IP_R1	1	549.6585083007812	2	549.259111	1096.50367	-0.52015	-0.0002857	-0.4326	-0.00023761	-0.95276	-0.00052331	549.2588265830884	25.079	0.55682	25.079	24.903	25.46	0					27	10	3	0	0	0	1.1887E-22	3	7251	7220;7251;7367		243.33	154.37	1	59867000			47046	1403;5890;6415	34229	34500	45991;45992;45993	45992					-0.04072349386888163
SEGDITQKGY	10	Unmodified	_SEGDITQKGY_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B;nc|ENSG00000160305|Q14689-6|DIP2A;ENST00000549620.5_1_12:50898851-51072694:+|nuORF;ENSG00000151240|ENST00000280886|DIP2C;ENSG00000160305|ENST00000417564|DIP2A;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A	ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C;ENSG00000160305|ENST00000417564|DIP2A	ENSG00000066084|ENST00000301180|DIP2B	MULTI-MSMS	A375_MHC_IP_R2	2	549.6582641601562	2	549.259111	1096.50367	-1.1491	-0.00063116	-0.013831	-7.5968E-06	-1.1629	-0.00063875	549.259029344866	24.643	0.55882	25.287	25.06	25.619	0.64368					29	10	4	0	0	0	1.1887E-22	3	8107	8076;8097;8107		243.33	154.37	1	35663000			47047	1403;5890;6415	34229	34500	45994;45995;45996	45996					-0.04072349386888163
SEGDLRRKLY	10	Unmodified	_SEGDLRRKLY_					0	0	0		nc|ENSG00000289758|Q92902-2|HPS1;nc|ENSG00000289758|Q92902-4|HPS1;ENSG00000107521|ENST00000361490|HPS1;ENST00000474873.5_1_10:100195027-100205113:-|nuORF;ENST00000467246.5_1_10:100191016-100205113:-|nuORF;nc|ENSG00000289758|Q92902-3|HPS1	nc|ENSG00000289758|Q92902-2|HPS1	nc|ENSG00000289758|Q92902-2|HPS1	MULTI-MSMS	A375_MHC_IP_R1	1	413.294677734375	3	412.894688	1235.66223	0.17338	7.1589E-05	-0.34705	-0.00014329	-0.17366	-7.1704E-05	412.89450483163677	25.452	0.61081	25.452	25.154	25.765	0					26	11	3	0	0	0	0.59998	1	7451	7451		20.871	9.9722	1	7102300			47048	2741	34230	34501	45997	45997					0.05382989312033715
SEGDLRRKLY	10	Unmodified	_SEGDLRRKLY_					0	0	0		nc|ENSG00000289758|Q92902-2|HPS1;nc|ENSG00000289758|Q92902-4|HPS1;ENSG00000107521|ENST00000361490|HPS1;ENST00000474873.5_1_10:100195027-100205113:-|nuORF;ENST00000467246.5_1_10:100191016-100205113:-|nuORF;nc|ENSG00000289758|Q92902-3|HPS1	nc|ENSG00000289758|Q92902-2|HPS1	nc|ENSG00000289758|Q92902-2|HPS1	MULTI-MSMS	A375_MHC_IP_R2	2	413.2942199707031	3	412.894688	1235.66223	-0.39191	-0.00016182	0.83285	0.00034388	0.44094	0.00018206	412.89451589753463	24.801	0.8663	25.445	25.161	26.028	0.64368					29	16	3	0	0	0	0.57453	1	8209	8209		22.775	4.9118	1	7584800			47049	2741	34230	34501	45998	45998					0.05382989312033715
SEGEDLIRF	9	Unmodified	_SEGEDLIRF_					0	0	0		ENSG00000115902|ENST00000234256|SLC1A4;nc|ENSG00000115902|P43007-2|SLC1A4;ENST00000493121.5_1_2:65228585-65238638:+|nuORF	ENSG00000115902|ENST00000234256|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	MULTI-MSMS	A375_MHC_IP_R1	1	533.6636352539062	2	533.264196	1064.51384	-0.72946	-0.00038899	-1.0324	-0.00055052	-1.7618	-0.00093951	533.2640424662945	76.974	0.76419	76.974	76.572	77.336	0					39	14	5	0	0	0	0.11715	1	28112	28112		47.594	22.195	1	3567400			47050	3348	34231	34502	45999	45999					-0.01583741661647764
SEGEDLIRF	9	Unmodified	_SEGEDLIRF_					0	0	0		ENSG00000115902|ENST00000234256|SLC1A4;nc|ENSG00000115902|P43007-2|SLC1A4;ENST00000493121.5_1_2:65228585-65238638:+|nuORF	ENSG00000115902|ENST00000234256|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	MULTI-SECPEP	A375_MHC_IP_R2	2	533.6635131835938	2	533.264196	1064.51384	-0.73851	-0.00039382	-1.0088	-0.00053796	-1.7473	-0.00093178	533.2639701569914	76.283	0.91251	77.024	76.64	77.553	0.74052					45	17	4	0	0	0	0.23313	1	28949	28949		57.249	35.502	1	4367600			47051	3348	34231	34502	46000	46000					-0.01583741661647764
SEGEPAFRF	9	Unmodified	_SEGEPAFRF_					0	0	0		ENSG00000164294|ENST00000503787|GPX8	ENSG00000164294|ENST00000503787|GPX8	ENSG00000164294|ENST00000503787|GPX8	MULTI-SECPEP	A375_MHC_IP_R1	1	520.645263671875	2	520.245806	1038.47706	-0.49737	-0.00025875	-0.30416	-0.00015824	-0.80153	-0.00041699	520.2456221065668	63.825	0.76408	63.825	63.377	64.141	0					34	14	3	0	0	0	0.31606	1	23028	23028		39.95	25.368	1	4629200			47052	6814	34232	34503	46001	46001					-0.04063993487557127
SEGEPAFRF	9	Unmodified	_SEGEPAFRF_					0	0	0		ENSG00000164294|ENST00000503787|GPX8	ENSG00000164294|ENST00000503787|GPX8	ENSG00000164294|ENST00000503787|GPX8	MULTI-MSMS	A375_MHC_IP_R2	2	520.6453247070312	2	520.245806	1038.47706	-0.61235	-0.00031857	-0.16617	-8.6449E-05	-0.77852	-0.00040502	520.2457134682315	63.024	0.65659	63.767	63.383	64.04	0.74263					28	12	3	0	0	0	0.12771	2	23859	23799;23859		45.7	30.451	1	5289500			47053	6814	34232	34503	46002;46003	46003					-0.04063993487557127
SEGFSHSRW	9	Unmodified	_SEGFSHSRW_					0	0	0		ENSG00000161011|ENST00000389805|SQSTM1;nc|ENSG00000161011|Q13501-2|SQSTM1;ENST00000466342.1_1_5:179250916-179260288:+|nuORF	ENSG00000161011|ENST00000389805|SQSTM1	ENSG00000161011|ENST00000389805|SQSTM1	MULTI-SECPEP	A375_MHC_IP_R1	1	364.96563720703125	3	364.833429	1091.47846	0.14593	5.3241E-05	0.14426	5.263E-05	0.29019	0.00010587	364.83347061052416	27.406	0.4051	27.406	27.179	27.584	0					16	7	3	0	0	0	0.27742	1	8298	8298		40.725	20.144	1	3682000			47054	6458	34233	34504	46004	46004					-0.06362359398804074
SEGFSHSRW	9	Unmodified	_SEGFSHSRW_					0	0	0		ENSG00000161011|ENST00000389805|SQSTM1;nc|ENSG00000161011|Q13501-2|SQSTM1;ENST00000466342.1_1_5:179250916-179260288:+|nuORF	ENSG00000161011|ENST00000389805|SQSTM1	ENSG00000161011|ENST00000389805|SQSTM1	MULTI-SECPEP	A375_MHC_IP_R2	2	365.2331237792969	3	364.833429	1091.47846	-0.30406	-0.00011093	0.17152	6.2575E-05	-0.13254	-4.8355E-05	364.8334307907768	26.728	0.40795	27.388	27.212	27.62	0.65992					13	7	2	0	0	0	0.27742	1	9072	9072		40.725	24.986	1	5850800			47055	6458	34233	34504	46005	46005					-0.06362359398804074
SEGGPPLRI	9	Unmodified	_SEGGPPLRI_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	A375_MHC_IP_R1	1	463.6587219238281	2	463.258717	924.50288	-0.25721	-0.00011915	0.018825	8.7207E-06	-0.23838	-0.00011043	463.2587315046732	50.375	0.96802	50.375	49.896	50.864	0					45	18	4	0	0	0	0.010171	1	17792	17792		96.111	34.753	1	23790000			47056	1386	34234	34505	46006	46006					0.03760900754696195
SEGGPPLRI	9	Unmodified	_SEGGPPLRI_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	A375_MHC_IP_R2	2	463.6584777832031	2	463.258717	924.50288	-0.84107	-0.00038963	0.32302	0.00014964	-0.51805	-0.00023999	463.25884479636363	49.469	0.86156	50.227	49.792	50.653	0.75736					47	16	4	0	0	0	0.018261	1	18525	18525		85.642	24.284	1	27245000			47057	1386	34234	34505	46007	46007					0.03760900754696195
SEGGQSLRI	9	Unmodified	_SEGGQSLRI_					0	0	0		ENST00000465956.1_1_6:33385543-33385645:-|nuORF;ENST00000494751.5_1_6:33385543-33385820:-|nuORF	ENST00000465956.1_1_6:33385543-33385645:-|nuORF	ENST00000465956.1_1_6:33385543-33385645:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	474.15081787109375	2	473.751256	945.487959	-0.48404	-0.00022932	0.24429	0.00011573	-0.23976	-0.00011358	473.7513202205574	34.692	0.55785	34.692	34.405	34.963	0					20	10	3	0	0	0	0.33896	1	11420	11420		47.594	11.088	1	21210000			47058	12254	34235	34506	46008	46008					0.01303408886701618
SEGGQSLRI	9	Unmodified	_SEGGQSLRI_					0	0	0		ENST00000465956.1_1_6:33385543-33385645:-|nuORF;ENST00000494751.5_1_6:33385543-33385820:-|nuORF	ENST00000465956.1_1_6:33385543-33385645:-|nuORF	ENST00000465956.1_1_6:33385543-33385645:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	474.15093994140625	2	473.751256	945.487959	-1.0456	-0.00049535	0.68403	0.00032406	-0.36157	-0.00017129	473.75146864961414	33.873	0.50532	34.625	34.348	34.853	0.75225					21	9	3	0	0	0	0.011308	1	12147	12147		96.936	17.339	1	18428000			47059	12254	34235	34506	46009	46009					0.01303408886701618
SEGHIVLTDF	10	Unmodified	_SEGHIVLTDF_					0	0	0		ENST00000532885.5_1_11:64128013-64135652:+|nuORF;nc|ENSG00000162302|O75676-2|RPS6KA4;ENSG00000162302|ENST00000334205|RPS6KA4	ENST00000532885.5_1_11:64128013-64135652:+|nuORF;nc|ENSG00000162302|O75676-2|RPS6KA4	nc|ENSG00000162302|O75676-2|RPS6KA4	MULTI-SECPEP	A375_MHC_IP_R1	1	559.654296875	2	559.279846	1116.54514	-0.3905	-0.0002184	2.3892	0.0013362	1.9987	0.0011178	559.2815716608758	44.224	0.61311	44.224	43.757	44.37	0					15	11	2	0	0	0	0.91556	1	15295	15295		14.838	10.082	1	1718900			47060	6517;13190	34236	34507	46010	46010					-0.008471686275925094
SEGIPIMRW	9	Unmodified	_SEGIPIMRW_					0	0	0		nc|ENSG00000156535|Q6YHK3-2|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	MULTI-MSMS	A375_MHC_IP_R1	1	545.181396484375	2	544.781502	1087.54845	-0.69833	-0.00038044	0.49273	0.00026843	-0.20561	-0.00011201	544.7817636315905	94.918	0.81551	94.918	94.548	95.364	0					32	14	3	0	0	0	0.070818	1	34874	34874		56.177	56.177	1	8538600			47061	6199	34237	34508	46011	46011					0.008178029454484204
SEGIPIMRW	9	Unmodified	_SEGIPIMRW_					0	0	0		nc|ENSG00000156535|Q6YHK3-2|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	MULTI-SECPEP	A375_MHC_IP_R2	2	545.1808471679688	2	544.781502	1087.54845	-0.61485	-0.00033496	0.56733	0.00030907	-0.047521	-2.5889E-05	544.7818265583135	94.179	0.75901	94.924	94.515	95.274	0.74474					33	14	3	0	0	0	0.31606	1	35736	35736		47.749	32.91	1	9827300			47062	6199	34237	34508	46012	46012					0.008178029454484204
SEGIPIMRW	9	Oxidation (M)	_SEGIPIM(Oxidation (M))RW_		SEGIPIM(1)RW		SEGIPIM(56)RW	0	0	1		nc|ENSG00000156535|Q6YHK3-2|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	MULTI-SECPEP	A375_MHC_IP_R1	1	553.1788330078125	2	552.778959	1103.54336	-0.95341	-0.00052702	0.081712	4.5169E-05	-0.87169	-0.00048185	552.7791966101884	68.069	1.1662	68.069	67.449	68.616	0					50	22	4	0	0	0	0.13064	1	24614	24614		56.177	45.353	1	11004000			47063	6199	34237	34509	46013	46013		332			-0.00426500917183148
SEGIPIMRW	9	Oxidation (M)	_SEGIPIM(Oxidation (M))RW_		SEGIPIM(1)RW		SEGIPIM(59)RW	0	0	1		nc|ENSG00000156535|Q6YHK3-2|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	MULTI-MSMS	A375_MHC_IP_R2	2	553.17822265625	2	552.778959	1103.54336	-0.79698	-0.00044055	-0.53139	-0.00029374	-1.3284	-0.00073429	552.7788934050742	67.274	0.96631	68.01	67.342	68.308	0.73631					46	18	4	0	0	0	0.064406	1	25432	25432		58.679	38.225	1	8449100			47064	6199	34237	34509	46014	46014		332			-0.00426500917183148
SEGIPTNRQT	10	Unmodified	_SEGIPTNRQT_					0	0	0		ENST00000283290.9_1_3:112267477-112272144:-|nuORF	ENST00000283290.9_1_3:112267477-112272144:-|nuORF	ENST00000283290.9_1_3:112267477-112272144:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1456298828125	2	551.778002	1101.54145	-0.76917	-0.00042441	0.28362	0.0001565	-0.48554	-0.00026791	551.7784840763339	67.538	0.35793	68.274	68.001	68.359	0.73631					8	6	2	0	0	0	0.87163	1	25484	25484		13.906	0	1	984040			47065	10437	34238	34510	46015	46015					-0.005258384014496187
SEGKVFINI	9	Unmodified	_SEGKVFINI_					0	0	0		nc|ENSG00000104872|Q9NWS0-3|PIH1D1;ENST00000595074.1_1_19:49952471-49954831:-|nuORF;ENSG00000104872|ENST00000262265|PIH1D1	nc|ENSG00000104872|Q9NWS0-3|PIH1D1	nc|ENSG00000104872|Q9NWS0-3|PIH1D1	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1814880371094	2	503.782025	1005.5495	-0.58376	-0.00029409	-1.3905	-0.00070053	-1.9743	-0.00099462	503.7823167580264	69.72	0.60991	70.454	70.183	70.793	0.73421					17	9	2	0	0	0	0.30925	1	26402	26402		41.956	14.327	1	3066500			47066	2546	34239	34511	46016	46016					0.04694340585979262
SEGLIKALF	9	Unmodified	_SEGLIKALF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	A375_MHC_IP_R1	1	489.6868896484375	2	489.286943	976.559333	-0.25474	-0.00012464	0.50785	0.00024849	0.25311	0.00012384	489.28702994867564	100.72	1.0644	100.72	100.33	101.39	0					30	20	3	0	0	0	0.04447	1	37011	37011		66.457	30.412	1	2614200			47067	1156	34240	34512	46017	46017					0.0701152859138574
SEGLIKALF	9	Unmodified	_SEGLIKALF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	A375_MHC_IP_R2	2	489.68658447265625	2	489.286943	976.559333	-0.30602	-0.00014973	-0.0098125	-4.8011E-06	-0.31583	-0.00015453	489.28698054754886	99.685	0.60901	100.45	100.17	100.78	0.76278					17	11	2	0	0	0	0.032333	1	37818	37818		72.968	36.924	1	2580900			47068	1156	34240	34512	46018	46018					0.0701152859138574
SEGNITKQL	9	Unmodified	_SEGNITKQL_					0	0	0		nc|ENSG00000111913|Q9Y4F9-2|RIPOR2;ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2	nc|ENSG00000111913|Q9Y4F9-2|RIPOR2	nc|ENSG00000111913|Q9Y4F9-2|RIPOR2	MSMS	A375_MHC_IP_R1	1	495.18218994140625	2	495.266739	988.518924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.452	1	29.452	28.952	29.952	0								0	0	0	0.11128	1	9225	9225		38.615	7.9782	1				47069	3042	34241	34513	46019	46019					0.024205622009503713
SEGNITKQL	9	Unmodified	_SEGNITKQL_					0	0	0		nc|ENSG00000111913|Q9Y4F9-2|RIPOR2;ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2	nc|ENSG00000111913|Q9Y4F9-2|RIPOR2	nc|ENSG00000111913|Q9Y4F9-2|RIPOR2	MULTI-MSMS	A375_MHC_IP_R2	2	495.6665344238281	2	495.266739	988.518924	-1.1741	-0.0005815	-0.028799	-1.4263E-05	-1.2029	-0.00059577	495.2666974403178	28.81	0.34825	29.509	29.333	29.681	0.69872					10	6	2	0	0	0	0.010078	2	10017	10017;10076		176.43	80.142	1	17098000			47070	3042	34241	34513	46020;46021	46020					0.024205622009503713
SEGNRISGATF	11	Unmodified	_SEGNRISGATF_					0	0	0		ENSG00000100804|ENST00000361611|PSMB5;ENST00000493471.2_1_14:23495300-23497005:-|nuORF;nc|ENSG00000100804|P28074-3|PSMB5	ENSG00000100804|ENST00000361611|PSMB5	ENSG00000100804|ENST00000361611|PSMB5	MULTI-SECPEP	A375_MHC_IP_R2	2	570.1614379882812	2	569.778002	1137.54145	-0.48715	-0.00027757	-1.4278	-0.00081353	-1.915	-0.0010911	569.7777085256662	35.849	0.55914	36.612	36.283	36.842	0.76338					16	10	3	0	0	0	0.39105	1	13022	13022		55.235	22.929	1	2512200			47071	2221	34242	34514	46022	46022					-0.02181838401429559
SEGPHGLRYNP	11	Unmodified	_SEGPHGLRYNP_					0	0	0		ENSG00000134864|ENST00000683975|GGACT	ENSG00000134864|ENST00000683975|GGACT	ENSG00000134864|ENST00000683975|GGACT	MULTI-SECPEP	A375_MHC_IP_R2	2	409.6156005859375	3	409.535271	1225.58398	-0.23139	-9.4763E-05	2.2306	0.00091349	1.9992	0.00081873	409.5349484483399	23.975	0.40853	24.605	24.435	24.843	0.63015					17	7	4	0	0	0	0.99018	1	7893	7893		6.2344	0.042509	1	3374800			47072	4617	34243	34515	46023	46023					-0.019784432731967172
SEGPLKGILGY	11	Unmodified	_SEGPLKGILGY_					0	0	0		ENSG00000111640|ENST00000229239|GAPDH;nc|ENSG00000111640|P04406-2|GAPDH;ENST00000466525.1_1_12:6646524-6647333:+|nuORF;ENST00000452570.1_1_X:39646388-39646742:-|nuORF;ENST00000405405.2_1_6:80662724-80663060:-|nuORF	ENSG00000111640|ENST00000229239|GAPDH	ENSG00000111640|ENST00000229239|GAPDH	MULTI-SECPEP	A375_MHC_IP_R1	1	567.7134399414062	2	567.313689	1132.61282	-0.46724	-0.00026507	-0.56689	-0.0003216	-1.0341	-0.00058668	567.313472259674	91.388	0.86107	91.388	90.794	91.655	0					36	16	3	0	0	0	0.10688	1	33560	33560		75.571	44.302	1	4293800			47073	3003	34244	34516	46024	46024					0.051822813032458726
SEGPLKGILGY	11	Unmodified	_SEGPLKGILGY_					0	0	0		ENSG00000111640|ENST00000229239|GAPDH;nc|ENSG00000111640|P04406-2|GAPDH;ENST00000466525.1_1_12:6646524-6647333:+|nuORF;ENST00000452570.1_1_X:39646388-39646742:-|nuORF;ENST00000405405.2_1_6:80662724-80663060:-|nuORF	ENSG00000111640|ENST00000229239|GAPDH	ENSG00000111640|ENST00000229239|GAPDH	MULTI-MSMS	A375_MHC_IP_R2	2	567.7606201171875	2	567.313689	1132.61282	-0.27439	-0.00015567	-1.6906	-0.00095911	-1.965	-0.0011148	567.3124050269246	90.548	1.521	91.283	90.804	92.325	0.7345					45	29	3	0	0	0	0.56517	1	34367	34367		26.021	5.6062	1	4143700			47074	3003	34244	34516	46025	46025					0.051822813032458726
SEGPLRPVL	9	Unmodified	_SEGPLRPVL_					0	0	0		ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451;nc|ENSG00000112200|Q9Y4E5-4|ZNF451	ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-4|ZNF451	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	484.6819763183594	2	484.282192	966.549831	-0.3096	-0.00014993	-0.078955	-3.8237E-05	-0.38855	-0.00018817	484.2820862462904	59.226	0.61004	59.226	58.938	59.548	0					33	11	4	0	0	0	0.046478	1	21261	21261		82.529	0	1	14075000			47075	3059;14548	34245	34517	46026	46026					0.06521760305861335
SEGPLRPVL	9	Unmodified	_SEGPLRPVL_					0	0	0		ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451;nc|ENSG00000112200|Q9Y4E5-4|ZNF451	ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-4|ZNF451	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	484.6820983886719	2	484.282192	966.549831	-0.89095	-0.00043147	0.18538	8.9776E-05	-0.70557	-0.0003417	484.2822023178879	58.26	0.86303	59.009	58.729	59.592	0.74895					40	16	4	0	0	0	0.087712	1	22008	22008		66.457	0	1	15563000			47076	3059;14548	34245	34517	46027	46027					0.06521760305861335
SEGPPLRLW	9	Unmodified	_SEGPPLRLW_					0	0	0		nc|ENSG00000164741|Q96QB1-4|DLC1;nc|ENSG00000164741|Q96QB1-1|DLC1;nc|ENSG00000164741|Q96QB1-6|DLC1;DLC1|p.N1462Mfs*8|1|0.55|ENSG00000164741|chr8:13086373-13086373|A/-|frameshift_variant;ENSG00000164741|ENST00000276297|DLC1	nc|ENSG00000164741|Q96QB1-4|DLC1	nc|ENSG00000164741|Q96QB1-4|DLC1	MULTI-SECPEP	A375_MHC_IP_R1	1	528.186767578125	2	527.787641	1053.56073	-0.75612	-0.00039907	0.014733	7.776E-06	-0.74139	-0.0003913	527.7875720557813	90.708	1.3698	90.708	90.285	91.655	0					52	26	4	0	0	0	0.034037	1	33269	33269		78.728	48.092	1	14058000			47077	750	34246	34518	46028	46028					0.03609162680118061
SEGPPLRLW	9	Unmodified	_SEGPPLRLW_					0	0	0		nc|ENSG00000164741|Q96QB1-4|DLC1;nc|ENSG00000164741|Q96QB1-1|DLC1;nc|ENSG00000164741|Q96QB1-6|DLC1;DLC1|p.N1462Mfs*8|1|0.55|ENSG00000164741|chr8:13086373-13086373|A/-|frameshift_variant;ENSG00000164741|ENST00000276297|DLC1	nc|ENSG00000164741|Q96QB1-4|DLC1	nc|ENSG00000164741|Q96QB1-4|DLC1	MULTI-SECPEP	A375_MHC_IP_R2	2	528.1868286132812	2	527.787641	1053.56073	-0.40944	-0.0002161	-0.057361	-3.0274E-05	-0.4668	-0.00024637	527.7875370763054	89.882	0.96616	90.614	89.936	90.902	0.7318					42	13	4	0	0	0	0.011451	1	34146	34146		96.111	58.137	1	15147000			47078	750	34246	34518	46029	46029					0.03609162680118061
SEGPPLTSF	9	Unmodified	_SEGPPLTSF_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	A375_MHC_IP_R1	1	468.1712646484375	2	467.729458	933.444362	-0.12324	-5.7641E-05	0.11138	5.2094E-05	-0.011859	-5.5467E-06	467.72945049967444	82.347	0.76141	82.347	82.011	82.772	0					31	14	3	0	0	0	0.0097266	2	30135	30077;30135		111.29	60.432	1	4080200			47079	2516	34247	34519	46030;46031	46031					-0.02502200610433647
SEGPPLTSF	9	Unmodified	_SEGPPLTSF_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-SECPEP	A375_MHC_IP_R1	1	934.0222778320312	1	934.451639	933.444362	0.13516	0.0001263	0.61302	0.00057284	0.74818	0.00069914	934.4518262237948	82.286	1.6739	82.286	81.809	83.483	0					78	32	4	0	0	0	0.16676	1	30248	30248		49.933	15.831	1	80513000			47080	2516	34247	34519	46032	46032					-0.02502200610433647
SEGPPLTSF	9	Unmodified	_SEGPPLTSF_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	A375_MHC_IP_R2	2	468.17108154296875	2	467.729458	933.444362	-0.70808	-0.00033119	0.50741	0.00023733	-0.20066	-9.3856E-05	467.7295581425536	81.512	0.65573	82.255	82.029	82.684	0.74293					28	12	3	0	0	0	0.0095277	3	30959	30920;30959;31075		108	57.142	1	4917800			47081	2516	34247	34519	46033;46034;46035	46034					-0.02502200610433647
SEGPPLTSF	9	Unmodified	_SEGPPLTSF_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	934.451639	933.444362	-0.32784	-0.00030636	0.85094	0.00079516	0.52309	0.00048881	934.4517508509842	81.458	1.5742	82.201	81.671	83.246	0.74293	-0.042717	8.5563E-05	NaN	49.933	81	30	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76241000			47082	2516	34247	34519							-0.02502200610433647
SEGPSRPVL	9	Unmodified	_SEGPSRPVL_					0	0	0		ENSG00000168116|ENST00000370733|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	MULTI-SECPEP	A375_MHC_IP_R2	2	471.4667053222656	2	471.256174	940.497795	-0.60182	-0.00028361	1.0637	0.00050129	0.46191	0.00021768	471.2566532496388	32.146	0.45728	32.882	32.654	33.112	0.73692					13	8	2	0	0	0	0.27114	1	11421	11421		45.74	7.7659	1	3931500			47083	7267	34248	34520	46036	46036					0.025165968920987325
SEGPSRPVL	9	Unmodified	_SEGPSRPVL_					0	0	0		ENSG00000168116|ENST00000370733|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	MULTI-MATCH	A375_MHC_IP_R1	1		2	471.256174	940.497795	-0.58151	-0.00027404	1.2184	0.00057418	0.63689	0.00030014	471.2566839060285	32.878	0.45517	32.878	32.634	33.09	0	-0.0021205	2.5415E-05	NaN	45.74	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2718500			47084	7267	34248	34520							0.025165968920987325
SEGPSTSRW	9	Unmodified	_SEGPSTSRW_					0	0	0		ENST00000536066.1_1_12:2967806-2973707:-|nuORF;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;chr12:2861412-2864320|463|17.76|0.58|4.94|-|ENST00000342628|FOXM1,FOXM1	ENST00000536066.1_1_12:2967806-2973707:-|nuORF	ENST00000536066.1_1_12:2967806-2973707:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	504.18157958984375	2	503.733063	1005.45157	-0.49647	-0.00025009	-0.37989	-0.00019136	-0.87636	-0.00044145	503.73284201391215	27.609	0.45507	27.609	27.432	27.887	0					19	8	3	0	0	0	0.50892	1	8359	8359		19.362	1.227	1	6002400			47085	409	34249	34521	46037	46037					-0.05093468009999924
SEGPSTSRW	9	Unmodified	_SEGPSTSRW_					0	0	0		ENST00000536066.1_1_12:2967806-2973707:-|nuORF;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;chr12:2861412-2864320|463|17.76|0.58|4.94|-|ENST00000342628|FOXM1,FOXM1	ENST00000536066.1_1_12:2967806-2973707:-|nuORF	ENST00000536066.1_1_12:2967806-2973707:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	503.733063	1005.45157	-0.49647	-0.00025009	-0.37989	-0.00019136	-0.87636	-0.00044145	503.73284201391215	27.609	0.45507	27.609	27.432	27.887	0	-0.022208	-0.00020383	NaN	19.362	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6002400			47086	409	34249	34521							-0.05093468009999924
SEGPTPLKF	9	Unmodified	_SEGPTPLKF_					0	0	0		ENST00000370763.5_1_1:78478758-78478905:+|nuORF	ENST00000370763.5_1_1:78478758-78478905:+|nuORF	ENST00000370763.5_1_1:78478758-78478905:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	488.6607971191406	2	488.260925	974.507297	-0.26357	-0.00012869	0.1992	9.726E-05	-0.064369	-3.1429E-05	488.26095145385915	57.553	0.6609	57.553	57.263	57.923	0					27	12	3	0	0	0	0.16764	1	20614	20614		60.074	11.728	1	8070400			47087	11156	34250	34522	46038	46038					0.01902365177613774
SEGPTPLKF	9	Unmodified	_SEGPTPLKF_					0	0	0		ENST00000370763.5_1_1:78478758-78478905:+|nuORF	ENST00000370763.5_1_1:78478758-78478905:+|nuORF	ENST00000370763.5_1_1:78478758-78478905:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	488.660400390625	2	488.260925	974.507297	-1.003	-0.00048971	0.26851	0.0001311	-0.73446	-0.00035861	488.2609471139337	56.785	0.66307	57.535	57.152	57.815	0.75015					30	12	3	0	0	0	0.074405	1	21414	21414		61.602	13.256	1	9299400			47088	11156	34250	34522	46039	46039					0.01902365177613774
SEGQISIFRY	10	Unmodified	_SEGQISIFRY_					0	0	0		nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN	nc|ENSG00000088812|O75882-3|ATRN	nc|ENSG00000088812|O75882-3|ATRN	MULTI-MSMS	A375_MHC_IP_R1	1	600.706787109375	2	600.306395	1198.59824	-0.24955	-0.00014981	0.90671	0.0005443	0.65715	0.00039449	600.3071424138019	79.135	0.305	79.135	78.96	79.265	0					8	5	2	0	0	0	0.11193	1	28913	28913		61.09	38.354	1	2130900			47089	1897	34251	34523	46040	46040					0.006882091551233316
SEGQVPNLKRY	11	Unmodified	_SEGQVPNLKRY_					0	0	0		ENSG00000168806|ENST00000305641|LCMT2;ENST00000567039.1_1_15:43620629-43622752:-|nuORF	ENSG00000168806|ENST00000305641|LCMT2	ENSG00000168806|ENST00000305641|LCMT2	MULTI-MSMS	A375_MHC_IP_R1	1	431.2981262207031	3	430.89821	1289.6728	-0.56381	-0.00024294	0.5148	0.00022183	-0.049007	-2.1117E-05	430.89828769768627	29.176	0.70879	29.176	28.694	29.403	0					41	13	5	0	0	0	0.015186	1	9095	9095		66.55	50.275	1	23667000			47090	7346	34252	34524	46041	46041					0.03954971966481935
SEGQVPNLKRY	11	Unmodified	_SEGQVPNLKRY_					0	0	0		ENSG00000168806|ENST00000305641|LCMT2;ENST00000567039.1_1_15:43620629-43622752:-|nuORF	ENSG00000168806|ENST00000305641|LCMT2	ENSG00000168806|ENST00000305641|LCMT2	MULTI-MSMS	A375_MHC_IP_R2	2	431.2979431152344	3	430.89821	1289.6728	-0.68664	-0.00029587	0.46475	0.00020026	-0.22189	-9.5613E-05	430.8982718759685	28.481	0.60812	29.159	28.655	29.263	0.67857					32	11	5	0	0	0	0.015186	1	9828	9828		66.55	50.275	1	22649000			47091	7346	34252	34524	46042	46042					0.03954971966481935
SEGRNLPY	8	Unmodified	_SEGRNLPY_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	A375_MHC_IP_R2	2	468.63232421875	2	468.232699	934.450845	-0.64535	-0.00030217	0.95229	0.00044589	0.30694	0.00014372	468.2330840698607	30.68	0.50417	31.399	31.165	31.669	0.71857					17	9	3	0	0	0	0.71451	1	10826	10826		30.225	0.38423	1	2845500			47092	1997	34253	34525	46043	46043					-0.019002626590577165
SEGRRNRCP	9	Unmodified	_SEGRRNRCP_					0	0	0		F13B|p.C267S|1|0.27|ENSG00000143278|chr1:197060371-197060371|C/G|missense_variant	F13B|p.C267S|1|0.27|ENSG00000143278|chr1:197060371-197060371|C/G|missense_variant	F13B|p.C267S|1|0.27|ENSG00000143278|chr1:197060371-197060371|C/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	538.1635131835938	2	537.764706	1073.51486	-1.267	-0.00068132	-0.27233	-0.00014645	-1.5393	-0.00082777	537.7644300398066	59.404	0.7595	60.151	59.793	60.553	0.74714					23	11	3	0	0	0	0.65246	1	22494	22494		10.824	10.824	1	3172000			47093	13967	34254	34526	46044	46044					-0.018958057737336276
SEGRRNRCP	9	Unmodified	_SEGRRNRCP_					0	0	0		F13B|p.C267S|1|0.27|ENSG00000143278|chr1:197060371-197060371|C/G|missense_variant	F13B|p.C267S|1|0.27|ENSG00000143278|chr1:197060371-197060371|C/G|missense_variant	F13B|p.C267S|1|0.27|ENSG00000143278|chr1:197060371-197060371|C/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	538.1638793945312	2	537.764706	1073.51486	-1.0584	-0.00056919	-0.13874	-7.4607E-05	-1.1972	-0.0006438	537.7644972006582	66.1	0.56209	66.838	66.475	67.037	0.73811					17	10	2	0	0	0	0.55359	1	25044	25044		28.487	28.487	1	4700500			47094	13967	34254	34526	46045	46045					-0.018958057737336276
SEGRRNRCP	9	Unmodified	_SEGRRNRCP_					0	0	0		F13B|p.C267S|1|0.27|ENSG00000143278|chr1:197060371-197060371|C/G|missense_variant	F13B|p.C267S|1|0.27|ENSG00000143278|chr1:197060371-197060371|C/G|missense_variant	F13B|p.C267S|1|0.27|ENSG00000143278|chr1:197060371-197060371|C/G|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	537.764706	1073.51486	-0.6787	-0.00036498	-0.027609	-1.4847E-05	-0.70631	-0.00037983	537.7644977537079	60.266	0.5085	60.266	60.006	60.514	0	0.057124	7.6914E-05	NaN	10.824	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3760900			47095	13967	34254	34526							-0.018958057737336276
SEGRRNRCP	9	Unmodified	_SEGRRNRCP_					0	0	0		F13B|p.C267S|1|0.27|ENSG00000143278|chr1:197060371-197060371|C/G|missense_variant	F13B|p.C267S|1|0.27|ENSG00000143278|chr1:197060371-197060371|C/G|missense_variant	F13B|p.C267S|1|0.27|ENSG00000143278|chr1:197060371-197060371|C/G|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	537.764706	1073.51486	-0.94152	-0.00050632	0.31624	0.00017006	-0.62528	-0.00033625	537.7646908867011	66.912	0.51053	66.912	66.58	67.091	0	0.037166	0.00029531	NaN	28.487	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5238900			47096	13967	34254	34526							-0.018958057737336276
SEGSINKIL	9	Unmodified	_SEGSINKIL_					0	0	0		ENSG00000079335|ENST00000336454|CDC14A;nc|ENSG00000079335|Q9UNH5-5|CDC14A;nc|ENSG00000079335|Q9UNH5-2|CDC14A;nc|ENSG00000079335|Q9UNH5-3|CDC14A	ENSG00000079335|ENST00000336454|CDC14A	ENSG00000079335|ENST00000336454|CDC14A	MULTI-MSMS	A375_MHC_IP_R1	1	481.1712341308594	2	480.771657	959.528761	0.070642	3.3963E-05	-0.77484	-0.00037252	-0.70419	-0.00033856	480.7712561439666	48.796	0.40498	48.796	48.629	49.033	0					14	7	3	0	0	0	0.017727	1	17247	17247		86.332	27.653	1	1878600			47097	1694	34255	34527	46046	46046					0.04737750206345481
SEGSINKIL	9	Unmodified	_SEGSINKIL_					0	0	0		ENSG00000079335|ENST00000336454|CDC14A;nc|ENSG00000079335|Q9UNH5-5|CDC14A;nc|ENSG00000079335|Q9UNH5-2|CDC14A;nc|ENSG00000079335|Q9UNH5-3|CDC14A	ENSG00000079335|ENST00000336454|CDC14A	ENSG00000079335|ENST00000336454|CDC14A	MULTI-SECPEP	A375_MHC_IP_R2	2	481.17144775390625	2	480.771657	959.528761	-0.4523	-0.00021745	-1.023	-0.00049182	-1.4753	-0.00070928	480.77142368233575	47.895	0.40255	48.656	48.48	48.883	0.76128					13	7	3	0	0	0	0.028087	1	17993	17993		96.367	18.217	1	2337800			47098	1694	34255	34527	46047	46047					0.04737750206345481
SEGTPEKPLY	10	Unmodified	_SEGTPEKPLY_					0	0	0		nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6;ENST00000511802.5_1_5:10353827-10401026:+|nuORF	nc|ENSG00000145495|O60337-5|MARCHF6	nc|ENSG00000145495|O60337-5|MARCHF6	MULTI-MSMS	A375_MHC_IP_R1	1	561.700927734375	2	560.779679	1119.5448	-0.48966	-0.00027459	0.21006	0.0001178	-0.2796	-0.00015679	560.7797201027474	31.893	0.66574	31.893	31.565	32.231	0					33	12	4	0	0	0	0.13881	1	10237	10237		55.503	26.421	1	10458000			47099	14662	34256	34528	46048	46048					-0.010185883474150614
SEGTPEKPLY	10	Unmodified	_SEGTPEKPLY_					0	0	0		nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6;ENST00000511802.5_1_5:10353827-10401026:+|nuORF	nc|ENSG00000145495|O60337-5|MARCHF6	nc|ENSG00000145495|O60337-5|MARCHF6	MULTI-MSMS	A375_MHC_IP_R2	2	561.700927734375	2	560.779679	1119.5448	-0.65789	-0.00036893	0.056202	3.1517E-05	-0.60169	-0.00033742	560.7796039382478	31.241	0.56217	31.96	31.77	32.332	0.71857					22	10	3	0	0	0	0.44858	1	10993	10993		31.268	13.122	1	10805000			47100	14662	34256	34528	46049	46049					-0.010185883474150614
SEGYPGKRYY	10	Unmodified	_SEGYPGKRYY_					0	0	0		nc|ENSG00000182199|P34897-3|SHMT2;nc|ENSG00000182199|P34897-2|SHMT2;ENSG00000182199|ENST00000328923|SHMT2	nc|ENSG00000182199|P34897-3|SHMT2	nc|ENSG00000182199|P34897-3|SHMT2	MULTI-SECPEP	A375_MHC_IP_R2	2	406.60308837890625	3	407.196256	1218.56694	-0.24246	-9.873E-05	-0.40348	-0.00016429	-0.64594	-0.00026302	407.1961543194853	23.998	0.71388	24.632	24.133	24.847	0.63392					22	13	2	0	0	0	0.86849	1	7700	7700		21.59	18.271	1	2944100			47101	8388	34257	34529	46050	46050					-0.03360363878982753
SEGYPGQRY	9	Unmodified	_SEGYPGQRY_					0	0	0		nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;ENST00000579558.5_1_17:18243959-18259295:-|nuORF;nc|ENSG00000176974|P34896-3|SHMT1;ENST00000419974.2_1_1:44317163-44317268:-|nuORF;ENST00000395682.3_1_17:18256945-18259295:-|nuORF	nc|ENSG00000176974|P34896-2|SHMT1	nc|ENSG00000176974|P34896-2|SHMT1	MULTI-MSMS	A375_MHC_IP_R1	1	529.1404418945312	2	528.740888	1055.46722	-0.6154	-0.00032539	-0.56478	-0.00029862	-1.1802	-0.00062401	528.7408026759399	24.673	0.65582	24.673	24.397	25.053	0					35	12	4	0	0	0	0.010171	2	7059	7059;7118		96.111	50.411	1	40196000			47102	8047	34258	34530	46051;46052	46051					-0.05829181492936186
SEGYPGQRY	9	Unmodified	_SEGYPGQRY_					0	0	0		nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;ENST00000579558.5_1_17:18243959-18259295:-|nuORF;nc|ENSG00000176974|P34896-3|SHMT1;ENST00000419974.2_1_1:44317163-44317268:-|nuORF;ENST00000395682.3_1_17:18256945-18259295:-|nuORF	nc|ENSG00000176974|P34896-2|SHMT1	nc|ENSG00000176974|P34896-2|SHMT1	MULTI-MSMS	A375_MHC_IP_R2	2	529.1400756835938	2	528.740888	1055.46722	-0.8348	-0.0004414	-0.42141	-0.00022282	-1.2562	-0.00066421	528.7407737038054	24.241	0.66097	24.884	24.653	25.314	0.64368					35	12	5	0	0	0	0.0092471	2	7911	7894;7911		103.35	49.521	1	36179000			47103	8047	34258	34530	46053;46054	46054					-0.05829181492936186
SEGYPGQRYY	10	Unmodified	_SEGYPGQRYY_					0	0	0		nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;ENST00000579558.5_1_17:18243959-18259295:-|nuORF;nc|ENSG00000176974|P34896-3|SHMT1	nc|ENSG00000176974|P34896-2|SHMT1	nc|ENSG00000176974|P34896-2|SHMT1	MULTI-MSMS	A375_MHC_IP_R1	1	610.6724853515625	2	610.272552	1218.53055	-0.55924	-0.00034129	-0.22631	-0.00013811	-0.78555	-0.0004794	610.2724881689927	36.451	0.51026	36.451	36.184	36.695	0					21	9	3	0	0	0	0.037053	1	12200	12200		79.596	61.45	1	4396400			47104	8047	34259	34531	46055	46055					-0.0699724077569499
SEGYPGQRYY	10	Unmodified	_SEGYPGQRYY_					0	0	0		nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;ENST00000579558.5_1_17:18243959-18259295:-|nuORF;nc|ENSG00000176974|P34896-3|SHMT1	nc|ENSG00000176974|P34896-2|SHMT1	nc|ENSG00000176974|P34896-2|SHMT1	MULTI-MSMS	A375_MHC_IP_R2	2	610.672119140625	2	610.272552	1218.53055	-0.64982	-0.00039657	-0.33277	-0.00020308	-0.98259	-0.00059965	610.2725123180105	35.843	0.55914	36.606	36.283	36.842	0.76338					23	10	3	0	0	0	0.046805	1	13010	13010		76.825	61.987	1	6036500			47105	8047	34259	34531	46056	46056					-0.0699724077569499
SEHEKIILY	9	Unmodified	_SEHEKIILY_					0	0	0		ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	MULTI-SECPEP	A375_MHC_IP_R1	1	378.2730712890625	3	377.873001	1130.59717	0.25607	9.6763E-05	0.13199	4.9874E-05	0.38806	0.00014664	377.87291947031923	41.965	0.35567	41.965	41.777	42.132	0					17	6	3	0	0	0	0.38578	1	14524	14524		38.615	24.209	1	4740700			47106	3641	34260	34532	46057	46057					0.03709994786208881
SEHEKIILY	9	Unmodified	_SEHEKIILY_					0	0	0		ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	MULTI-SECPEP	A375_MHC_IP_R1	1	566.7056884765625	2	566.305864	1130.59717	-0.43827	-0.0002482	1.1463	0.00064913	0.70798	0.00040093	566.3061617010461	41.957	0.81154	41.957	41.725	42.537	0					30	15	3	0	0	0	0.090157	1	14520	14520		76.825	38.851	1	9086800			47107	3641	34260	34532	46058	46058					0.03709994786208881
SEHEKIILY	9	Unmodified	_SEHEKIILY_					0	0	0		ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	MULTI-MSMS	A375_MHC_IP_R2	2	566.7056274414062	2	566.305864	1130.59717	-0.67096	-0.00037997	0.68669	0.00038888	0.015736	8.9114E-06	566.3057213859213	41.102	0.60801	41.877	41.641	42.249	0.77451					30	11	4	0	0	0	0.024772	1	15227	15227		86.332	55.695	1	9259000			47108	3641	34260	34532	46059	46059					0.03709994786208881
SEHEKIILY	9	Unmodified	_SEHEKIILY_					0	0	0		ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	MULTI-SECPEP	A375_MHC_IP_R2	2	378.2730407714844	3	377.873001	1130.59717	-0.1138	-4.3E-05	0.25311	9.5643E-05	0.13931	5.2643E-05	377.8730190209982	41.067	0.35544	41.841	41.692	42.047	0.77451					11	6	2	0	0	0	0.34746	1	15231	15231		35.612	21.207	1	4388300			47109	3641	34260	34532	46060	46060					0.03709994786208881
SEHERQYLL	9	Unmodified	_SEHERQYLL_					0	0	0		nc|ENSG00000058600|Q9NVU0-3|POLR3E;nc|ENSG00000058600|Q9NVU0-2|POLR3E;nc|ENSG00000058600|Q9NVU0-5|POLR3E;ENST00000564061.5_1_16:22308800-22337695:+|nuORF;nc|ENSG00000058600|Q9NVU0-4|POLR3E;ENSG00000058600|ENST00000299853|POLR3E;POLR3E|p.C378*|1|0.22|ENSG00000058600|chr16:22324507-22324514|GCGCCGAG/-|frameshift_variant	nc|ENSG00000058600|Q9NVU0-3|POLR3E	nc|ENSG00000058600|Q9NVU0-3|POLR3E	MULTI-SECPEP	A375_MHC_IP_R2	2	392.5999755859375	3	392.199889	1173.57784	-0.27198	-0.00010667	-0.065303	-2.5612E-05	-0.33728	-0.00013228	392.1998289400394	32.945	0.45835	33.682	33.417	33.876	0.73692					21	8	3	0	0	0	0.41434	1	11779	11779		30.703	20.939	1	4902500			47110	1294	34261	34533	46061	46061					-0.0020096150471999863
SEHERQYLL	9	Unmodified	_SEHERQYLL_					0	0	0		nc|ENSG00000058600|Q9NVU0-3|POLR3E;nc|ENSG00000058600|Q9NVU0-2|POLR3E;nc|ENSG00000058600|Q9NVU0-5|POLR3E;ENST00000564061.5_1_16:22308800-22337695:+|nuORF;nc|ENSG00000058600|Q9NVU0-4|POLR3E;ENSG00000058600|ENST00000299853|POLR3E;POLR3E|p.C378*|1|0.22|ENSG00000058600|chr16:22324507-22324514|GCGCCGAG/-|frameshift_variant	nc|ENSG00000058600|Q9NVU0-3|POLR3E	nc|ENSG00000058600|Q9NVU0-3|POLR3E	MULTI-SECPEP	A375_MHC_IP_R2	2	587.6455078125	2	587.796195	1173.57784	-0.6913	-0.00040634	1.557	0.00091518	0.86567	0.00050884	587.7981683599729	33.011	0.61177	33.748	33.518	34.13	0.73692					17	11	3	0	0	0	0.40377	1	11724	11724		28.495	25.213	1	2149400			47111	1294	34261	34533	46062	46062					-0.0020096150471999863
SEHFTKDSF	9	Unmodified	_SEHFTKDSF_					0	0	0		ENSG00000176946|ENST00000407315|THAP4	ENSG00000176946|ENST00000407315|THAP4	ENSG00000176946|ENST00000407315|THAP4	MULTI-MSMS	A375_MHC_IP_R2	2	549.197998046875	2	549.248546	1096.48254	-1.1534	-0.00063352	-0.41632	-0.00022866	-1.5697	-0.00086218	549.2484320434146	26.503	0.40766	27.163	27.058	27.466	0.65992					9	7	2	0	0	0	0.59859	1	8958	8958		15.248	2.206	1	1362500			47112	8046	34262	34534	46063	46063					-0.06184314695747162
SEHGIFTQRCM	11	Unmodified	_SEHGIFTQRCM_					0	0	0			REV__nc|ENSG00000172354|P62879-2|GNB2	REV__nc|ENSG00000172354|P62879-2|GNB2	MSMS	A375_MHC_IP_R1	1	436.641357421875	3	436.865635	1307.57508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.702	1	24.702	24.202	25.202	0								0	0	0	0.16249	1	7073	7073		2.6312	0	1		+		47113	21138	34263	34535	46064	46064					-0.06640876225537795
SEHIHGKWRG	10	Unmodified	_SEHIHGKWRG_					0	0	0			REV__CASKIN2|p.P971Afs*141|1|0.82|ENSG00000177303|chr17:75502139-75502163|CGGGGGGCACGGGTGTCTCTCGGGG/-|frameshift_variant	REV__CASKIN2|p.P971Afs*141|1|0.82|ENSG00000177303|chr17:75502139-75502163|CGGGGGGCACGGGTGTCTCTCGGGG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	403.5972900390625	3	402.875739	1205.60539	-0.43561	-0.0001755	0.80834	0.00032566	0.37273	0.00015016	402.87547673014774	24.803	0.90986	24.803	24.447	25.357	0					34	17	4	0	0	0	0.70012	1	7054	7054		7.4771	1.9538	1	18314000	+		47114	15578	34264	34536	46065	46065					0.010809865461624213
SEHITKRIVP	10	Unmodified	_SEHITKRIVP_					0	0	0			REV__ENSG00000187753|ENST00000339137|C9orf153	REV__ENSG00000187753|ENST00000339137|C9orf153	MSMS	A375_MHC_IP_R1	1	393.94000244140625	3	393.899662	1178.67716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.633	1	24.633	24.133	25.133	0								0	0	0	0.15287	1	7038	7038		11.518	1.2026	1		+		47115	22044	34265	34537	46066	46066					0.09496481180030969
SEHLLKEAET	10	Unmodified	_SEHLLKEAET_					0	0	0		tr|U7SMQ3|U7SMQ3_FUSNUATPsynthasesubunitbOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpFPE=3SV=1	tr|U7SMQ3|U7SMQ3_FUSNUATPsynthasesubunitbOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpFPE=3SV=1	tr|U7SMQ3|U7SMQ3_FUSNUATPsynthasesubunitbOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpFPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	386.5997009277344	3	386.199666	1155.57717	0.63572	0.00024551	0.31088	0.00012006	0.94659	0.00036557	386.19963864499186	44.501	0.66408	44.501	44.113	44.777	0					22	12	4	0	0	0	0.54492	1	15559	15559		17.049	4.1926	1	4241000			47116	29533	34266	34538	46067	46067					0.005601990555760494
SEHLNWPVY	9	Unmodified	_SEHLNWPVY_					0	0	0			REV__GLB1L3|p.P130S|1|0.34|ENSG00000166105|chr11:134281402-134281402|C/T|missense_variant	REV__GLB1L3|p.P130S|1|0.34|ENSG00000166105|chr11:134281402-134281402|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	573.1740112304688	2	572.774731	1143.53491	-0.22809	-0.00013064	-1.4027	-0.00080342	-1.6308	-0.00093406	572.7736458153644	46.258	0.85828	46.258	45.738	46.596	0					23	14	2	0	0	0	0.54812	1	16235	16235		34.102	10.313	1	3356300	+		47117	26685	34267	34539	46068	46068					-0.031117315621258967
SEHLNWPVY	9	Unmodified	_SEHLNWPVY_					0	0	0			REV__GLB1L3|p.P130S|1|0.34|ENSG00000166105|chr11:134281402-134281402|C/T|missense_variant	REV__GLB1L3|p.P130S|1|0.34|ENSG00000166105|chr11:134281402-134281402|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	573.1739501953125	2	572.774731	1143.53491	-0.29859	-0.00017102	-1.2769	-0.00073137	-1.5755	-0.0009024	572.7738343347529	45.423	0.81248	46.189	45.59	46.403	0.76518					24	12	3	0	0	0	0.63622	1	16984	16984		26.884	26.884	1	4090200	+		47118	26685	34267	34539	46069	46069					-0.031117315621258967
SEHNTPVRSEW	11	Unmodified	_SEHNTPVRSEW_					0	0	0		nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12;ENSG00000127947|ENST00000248594|PTPN12	nc|ENSG00000127947|Q05209-2|PTPN12	nc|ENSG00000127947|Q05209-2|PTPN12	MULTI-SECPEP	A375_MHC_IP_R2	2	448.27716064453125	3	447.877586	1340.61093	-0.78166	-0.00035009	-0.18865	-8.4494E-05	-0.97031	-0.00043458	447.8774658057566	25.509	0.30289	26.152	26.028	26.33	0.64368					9	5	2	0	0	0	0.90223	1	8576	8576		23.34	19.753	1	3576600			47119	4111	34268	34540	46070	46070					-0.045753794526717684
SEHPSINKQEW	11	Unmodified	_SEHPSINKQEW_					0	0	0		ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	MULTI-MSMS	A375_MHC_IP_R1	1	452.6176452636719	3	452.217719	1353.63133	-0.085639	-3.8727E-05	-0.21876	-9.8927E-05	-0.3044	-0.00013765	452.2176735150104	28.58	0.40489	28.58	28.44	28.845	0					17	7	3	0	0	0	0.001137	1	8859	8859		102.46	90.235	1	5893500			47120	6979	34269	34541	46071	46071					-0.03134208792835125
SEHPSINKQEW	11	Unmodified	_SEHPSINKQEW_					0	0	0		ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	MULTI-MSMS	A375_MHC_IP_R2	2	452.6172790527344	3	452.217719	1353.63133	-0.32428	-0.00014665	-0.3075	-0.00013906	-0.63179	-0.00028571	452.217626428103	27.916	0.40652	28.594	28.452	28.858	0.67857					15	7	3	0	0	0	0.0083752	1	9601	9601		93.928	79.757	1	6326200			47121	6979	34269	34541	46072	46072					-0.03134208792835125
SEHQPTTW	8	Unmodified	_SEHQPTTW_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;STT3B|p.S413F|1|0.19|ENSG00000163527|chr3:31619741-31619741|C/T|missense_variant;ENST00000526726.1_1_11:125479363-125482632:+|nuORF;ENSG00000163527|ENST00000295770|STT3B;ENST00000436236.1_1_3:31638325-31661336:+|nuORF;ENST00000423527.5_1_3:31574490-31661461:+|nuORF	ENSG00000134910|ENST00000392708|STT3A;ENSG00000163527|ENST00000295770|STT3B	ENSG00000134910|ENST00000392708|STT3A	MULTI-MSMS	A375_MHC_IP_R1	1	493.6220703125	2	493.222331	984.430109	-0.55443	-0.00027346	0.075235	3.7108E-05	-0.47919	-0.00023635	493.22231434271526	28.012	0.50225	28.012	27.836	28.339	0					22	9	3	0	0	0	0.16549	2	8584	8567;8584		78.728	44.626	1	11992000			47122	4626;6678	34270	34542	46073;46074	46074					-0.06272853038728954
SEHQPTTW	8	Unmodified	_SEHQPTTW_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;STT3B|p.S413F|1|0.19|ENSG00000163527|chr3:31619741-31619741|C/T|missense_variant;ENST00000526726.1_1_11:125479363-125482632:+|nuORF;ENSG00000163527|ENST00000295770|STT3B;ENST00000436236.1_1_3:31638325-31661336:+|nuORF;ENST00000423527.5_1_3:31574490-31661461:+|nuORF	ENSG00000134910|ENST00000392708|STT3A;ENSG00000163527|ENST00000295770|STT3B	ENSG00000134910|ENST00000392708|STT3A	MULTI-MSMS	A375_MHC_IP_R2	2	493.6219787597656	2	493.222331	984.430109	-0.42495	-0.00020959	-0.3238	-0.0001597	-0.74874	-0.0003693	493.22212078397695	27.389	0.50681	28.068	27.895	28.401	0.67857					20	9	3	0	0	0	0.17784	2	9360	9360;9366		69.105	38.88	1	7673900			47123	4626;6678	34270	34542	46075;46076	46075					-0.06272853038728954
SEHRNLQNLL	10	Unmodified	_SEHRNLQNLL_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	A375_MHC_IP_R1	1	408.9549255371094	3	408.554554	1222.64183	0.063871	2.6095E-05	1.2676	0.0005179	1.3315	0.000544	408.5546289795423	43.214	0.40778	43.214	42.993	43.4	0					23	7	4	0	0	0	0.51635	1	15019	15019		27.129	9.6862	1	4752400			47124	5230;1491	34271	34543	46077	46077					0.03941818652242546
SEHRNLQNLL	10	Unmodified	_SEHRNLQNLL_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	A375_MHC_IP_R1	1	612.7298583984375	2	612.328193	1222.64183	-0.13995	-8.5693E-05	0.64886	0.00039732	0.50891	0.00031162	612.3288629758129	43.202	0.45818	43.202	42.942	43.4	0					11	8	2	0	0	0	0.38461	1	15027	15027		40.239	19.825	1	1843100			47125	5230;1491	34271	34543	46078	46078					0.03941818652242546
SEHRNLQNLL	10	Unmodified	_SEHRNLQNLL_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MSMS	A375_MHC_IP_R2	2	408.6067810058594	3	408.554554	1222.64183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.205	1	42.977	42.477	43.477	0.7724								0	0	0	0.15158	1	15693	15693		14.838	0.61973	1				47126	5230;1491	34271	34543	46079	46079					0.03941818652242546
SEHRNLQNLL	10	Unmodified	_SEHRNLQNLL_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MATCH	A375_MHC_IP_R2	2		2	612.328193	1222.64183	-0.47031	-0.00028798	0.36156	0.0002214	-0.10874	-6.6588E-05	612.327877165298	42.334	0.30706	43.107	42.86	43.167	0.7724	-0.047362	-0.00015784	NaN	40.239	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1510700			47127	5230;1491	34271	34543							0.03941818652242546
SEHSIIKDF	9	Unmodified	_SEHSIIKDF_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35819109-35819445:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	A375_MHC_IP_R1	1	359.5854187011719	3	359.185468	1074.53457	-0.21636	-7.7715E-05	0.015732	5.6507E-06	-0.20063	-7.2064E-05	359.18539547191534	41.272	0.40675	41.272	41.114	41.521	0					16	7	3	0	0	0	0.10622	1	14253	14253		46.022	15.319	1	2689600			47128	2155	34272	34544	46080	46080					0.0002884871801143163
SEHSIIKDF	9	Unmodified	_SEHSIIKDF_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35819109-35819445:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-SECPEP	A375_MHC_IP_R2	2	359.5853271484375	3	359.185468	1074.53457	-0.28592	-0.0001027	0.41204	0.000148	0.12612	4.5299E-05	359.18536973786115	40.4	0.76267	41.175	40.98	41.743	0.77451					22	14	3	0	0	0	0.14572	1	14970	14970		42.312	22.687	1	3004700			47129	2155	34272	34544	46081	46081					0.0002884871801143163
SEHSYNEPV	9	Unmodified	_SEHSYNEPV_					0	0	0			REV__IGHMBP2|p.N655S|1|0.16|ENSG00000132740|chr11:68936444-68936444|A/G|missense_variant	REV__IGHMBP2|p.N655S|1|0.16|ENSG00000132740|chr11:68936444-68936444|A/G|missense_variant	MSMS	A375_MHC_IP_R1	1	531.1671752929688	2	531.230353	1060.44615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.394	1	72.394	71.894	72.894	0								0	0	0	0.15486	1	26337	26337		12.532	2.3482	1		+		47130	26780	34273	34545	46082	46082					-0.0816519159247946
SEHTYGSTV	9	Unmodified	_SEHTYGSTV_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	A375_MHC_IP_R1	1	491.09759521484375	2	490.719621	979.42469	-0.2942	-0.00014437	0.13794	6.7688E-05	-0.15626	-7.6681E-05	490.7196542686075	43.715	0.71369	43.715	43.451	44.165	0					18	13	2	0	0	0	0.62767	1	15273	15273		16.942	5.302	1	1845600	+		47131	21639	34274	34546	46083	46083					-0.06584576621162341
SEHTYGSTV	9	Unmodified	_SEHTYGSTV_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MATCH	A375_MHC_IP_R2	2		2	490.719621	979.42469	-0.4399	-0.00021587	-0.1856	-9.1078E-05	-0.6255	-0.00030695	490.7194669953261	43.071	0.45575	43.843	43.623	44.079	0.7724	0.064046	-0.00018258	NaN	16.942	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1444100	+		47132	21639	34274	34546							-0.06584576621162341
SEHVFDHPW	9	Unmodified	_SEHVFDHPW_					0	0	0		ENST00000466051.1_1_20:57613469-57617839:-|nuORF;nc|ENSG00000101166|Q9Y3B1-2|PRELID3B;ENSG00000101166|ENST00000355937|PRELID3B	ENST00000466051.1_1_20:57613469-57617839:-|nuORF	ENST00000466051.1_1_20:57613469-57617839:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	385.57366943359375	3	385.173562	1152.49886	0.43884	0.00016903	0.17921	6.9027E-05	0.61805	0.00023806	385.17349700040035	51.695	0.45517	51.695	51.475	51.93	0					19	8	3	0	0	0	0.14422	1	18367	18367		40.239	34.456	1	4417800			47133	2261	34275	34547	46084	46084					-0.07129188739008896
SEHVFDHPW	9	Unmodified	_SEHVFDHPW_					0	0	0		ENST00000466051.1_1_20:57613469-57617839:-|nuORF;nc|ENSG00000101166|Q9Y3B1-2|PRELID3B;ENSG00000101166|ENST00000355937|PRELID3B	ENST00000466051.1_1_20:57613469-57617839:-|nuORF	ENST00000466051.1_1_20:57613469-57617839:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	577.6566162109375	2	577.256705	1152.49886	-0.0031225	-1.8025E-06	0.30054	0.00017349	0.29741	0.00017168	577.2569707585726	51.695	0.30398	51.695	51.525	51.829	0					14	5	3	0	0	0	0.04395	1	18369	18369		71.922	71.922	1	3429500			47134	2261	34275	34547	46085	46085					-0.07129188739008896
SEHVFDHPW	9	Unmodified	_SEHVFDHPW_					0	0	0		ENST00000466051.1_1_20:57613469-57617839:-|nuORF;nc|ENSG00000101166|Q9Y3B1-2|PRELID3B;ENSG00000101166|ENST00000355937|PRELID3B	ENST00000466051.1_1_20:57613469-57617839:-|nuORF	ENST00000466051.1_1_20:57613469-57617839:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	385.57373046875	3	385.173562	1152.49886	-0.21403	-8.2438E-05	0.31782	0.00012241	0.10379	3.9976E-05	385.17360778099606	50.939	0.55683	51.693	51.462	52.019	0.75406					22	10	3	0	0	0	0.14422	1	19160	19160		40.239	34.047	1	4443600			47135	2261	34275	34547	46086	46086					-0.07129188739008896
SEHVFDHPW	9	Unmodified	_SEHVFDHPW_					0	0	0		ENST00000466051.1_1_20:57613469-57617839:-|nuORF;nc|ENSG00000101166|Q9Y3B1-2|PRELID3B;ENSG00000101166|ENST00000355937|PRELID3B	ENST00000466051.1_1_20:57613469-57617839:-|nuORF	ENST00000466051.1_1_20:57613469-57617839:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	577.6563720703125	2	577.256705	1152.49886	-0.26178	-0.00015112	0.73126	0.00042213	0.46948	0.00027101	577.2566931697214	50.936	0.75829	51.69	51.209	51.968	0.75406					19	14	2	0	0	0	0.3213	1	19177	19177		37.974	34.693	1	2515800			47136	2261	34275	34547	46087	46087					-0.07129188739008896
SEHWLVRIY	9	Unmodified	_SEHWLVRIY_					0	0	0		ENSG00000163527|ENST00000295770|STT3B;ENST00000463044.1_1_3:31667577-31674651:+|nuORF	ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	MULTI-MSMS	A375_MHC_IP_R1	1	401.9487609863281	3	401.548741	1201.62439	-0.26693	-0.00010719	0.14791	5.9393E-05	-0.11902	-4.7792E-05	401.5486953885012	72.891	0.50758	72.891	72.676	73.184	0					18	9	3	0	0	0	0.037085	1	26547	26547		69.338	42.115	1	2443900			47137	6678	34276	34548	46088	46088					0.03164523117243334
SEHWLVRIY	9	Unmodified	_SEHWLVRIY_					0	0	0		ENSG00000163527|ENST00000295770|STT3B;ENST00000463044.1_1_3:31667577-31674651:+|nuORF	ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	MULTI-MSMS	A375_MHC_IP_R2	2	401.948486328125	3	401.548741	1201.62439	-0.26474	-0.00010631	-0.15192	-6.1003E-05	-0.41666	-0.00016731	401.8830873983551	71.985	0.55699	72.72	72.414	72.971	0.73421					18	10	2	0	0	0	0.037085	1	27318	27318		69.338	47.748	1	2366800			47138	6678	34276	34548	46089	46089					0.03164523117243334
SEIADLWNSP	10	Unmodified	_SEIADLWNSP_					0	0	0		nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;nc|ENSG00000107736|Q9H251-11|CDH23;nc|ENSG00000107736|Q9H251-10|CDH23;nc|ENSG00000107736|Q9H251-9|CDH23;nc|ENSG00000107736|Q9H251-7|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-SECPEP	A375_MHC_IP_R2	2	565.6793212890625	2	566.269478	1130.5244	-0.33681	-0.00019073	-0.37598	-0.00021291	-0.71279	-0.00040363	566.7704806278201	42.706	0.75944	43.478	43.167	43.926	0.7724					20	14	2	0	0	0	0.76414	1	15964	15964		14.838	14.838	1	1880000			47139	2753	34277	34549	46090	46090					-0.03563759007261069
SEIADPTRF	9	Unmodified	_SEIADPTRF_					0	0	0		ENSG00000213676|ENST00000375203|ATF6B;nc|ENSG00000213676|Q99941-2|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	ENSG00000213676|ENST00000375203|ATF6B	ENSG00000213676|ENST00000375203|ATF6B	MULTI-SECPEP	A375_MHC_IP_R1	1	518.9716796875	2	518.258914	1034.50327	-0.5554	-0.00028784	-0.029255	-1.5162E-05	-0.58465	-0.000303	518.2589013122112	50.462	0.96692	50.462	50.101	51.068	0					51	18	4	0	0	0	0.0575	1	17871	17871		67.838	36.57	1	21267000			47140	9577	34278	34550	46091	46091					-0.01259724316082611
SEIADPTRF	9	Unmodified	_SEIADPTRF_					0	0	0		ENSG00000213676|ENST00000375203|ATF6B;nc|ENSG00000213676|Q99941-2|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	ENSG00000213676|ENST00000375203|ATF6B	ENSG00000213676|ENST00000375203|ATF6B	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1793823242188	2	518.258914	1034.50327	-0.97874	-0.00050724	0.14854	7.6981E-05	-0.83021	-0.00043026	518.2590308857333	49.765	0.91375	50.519	50.092	51.006	0.75406					59	17	5	0	0	0	0.011308	1	18700	18700		107.1	63.241	1	27352000			47141	9577	34278	34550	46092	46092					-0.01259724316082611
SEIADPTRFF	10	Unmodified	_SEIADPTRFF_					0	0	0		ENSG00000213676|ENST00000375203|ATF6B;nc|ENSG00000213676|Q99941-2|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	ENSG00000213676|ENST00000375203|ATF6B	ENSG00000213676|ENST00000375203|ATF6B	MULTI-MSMS	A375_MHC_IP_R1	1	592.1934814453125	2	591.793121	1181.57169	-0.4115	-0.00024352	-0.97043	-0.00057429	-1.3819	-0.00081782	591.7929904386696	94.169	0.60708	94.169	93.89	94.497	0					21	11	3	0	0	0	0.094079	1	34615	34615		64.927	44.512	1	3173300			47142	9577	34279	34551	46093	46093					-0.011834797362325844
SEIADPTRFF	10	Unmodified	_SEIADPTRFF_					0	0	0		ENSG00000213676|ENST00000375203|ATF6B;nc|ENSG00000213676|Q99941-2|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	ENSG00000213676|ENST00000375203|ATF6B	ENSG00000213676|ENST00000375203|ATF6B	MULTI-SECPEP	A375_MHC_IP_R2	2	592.193115234375	2	591.793121	1181.57169	-0.43924	-0.00025994	-0.077223	-4.57E-05	-0.51646	-0.00030564	591.7933208042879	93.471	0.50767	94.216	93.956	94.463	0.74474					22	9	3	0	0	0	0.13368	1	35530	35530		73.196	60.154	1	2630800			47143	9577	34279	34551	46094	46094					-0.011834797362325844
SEIAKEQGF	9	Unmodified	_SEIAKEQGF_					0	0	0		nc|ENSG00000180228|O75569-3|PRKRA;nc|ENSG00000180228|O75569-2|PRKRA;ENSG00000180228|ENST00000325748|PRKRA	nc|ENSG00000180228|O75569-3|PRKRA	nc|ENSG00000180228|O75569-3|PRKRA	MULTI-SECPEP	A375_MHC_IP_R1	1	505.1532897949219	2	504.753464	1007.49238	-0.4876	-0.00024612	0.79132	0.00039942	0.30372	0.00015331	504.75401534956313	31.118	0.70809	31.118	30.806	31.514	0					22	13	2	0	0	0	0.028087	1	9958	9958		106.94	35.018	1	4095300			47144	8283	34280	34552	46095	46095					-0.011071266903627475
SEIAKEQGF	9	Unmodified	_SEIAKEQGF_					0	0	0		nc|ENSG00000180228|O75569-3|PRKRA;nc|ENSG00000180228|O75569-2|PRKRA;ENSG00000180228|ENST00000325748|PRKRA	nc|ENSG00000180228|O75569-3|PRKRA	nc|ENSG00000180228|O75569-3|PRKRA	MULTI-SECPEP	A375_MHC_IP_R2	2	505.1535949707031	2	504.753464	1007.49238	-0.70795	-0.00035734	1.7076	0.00086192	0.99964	0.00050457	504.7549605704125	30.467	1.0631	31.186	30.911	31.974	0.71857					33	20	3	0	0	0	0.025037	1	10718	10718		110.55	38.63	1	4592500			47145	8283	34280	34552	46096	46096					-0.011071266903627475
SEIASQGREL	10	Unmodified	_SEIASQGREL_					0	0	0		ENSG00000109775|ENST00000264689|UFSP2;ENST00000510206.5_1_4:186321548-186327081:-|nuORF	ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	MULTI-SECPEP	A375_MHC_IP_R2	2	545.679931640625	2	545.280377	1088.5462	-0.9046	-0.00049326	0.15613	8.5134E-05	-0.74847	-0.00040813	545.2801454285888	28.008	0.4064	28.686	28.502	28.909	0.67857					13	7	3	0	0	0	0.15631	1	9665	9665		78.06	38.111	1	3288100			47146	2891	34281	34553	46097	46097					0.0054704574135939765
SEIAVGHQY	9	Unmodified	_SEIAVGHQY_					0	0	0		nc|ENSG00000125434|Q3KQZ1-3|SLC25A35;nc|ENSG00000125434|Q3KQZ1-2|SLC25A35;nc|ENSG00000125434|Q3KQZ1-4|SLC25A35;ENSG00000125434|ENST00000577745|SLC25A35	nc|ENSG00000125434|Q3KQZ1-3|SLC25A35	nc|ENSG00000125434|Q3KQZ1-3|SLC25A35	MULTI-MSMS	A375_MHC_IP_R1	1	502.71826171875	2	502.245806	1002.47706	-0.53399	-0.0002682	3.0502	0.0015319	2.5162	0.0012638	502.2457141884136	30.989	1.1159	30.989	30.653	31.769	0					56	21	4	0	0	0	0.51106	1	9817	9817		19.257	0	1	6125400			47147	3961	34282	34554	46098	46098					-0.024079934875658182
SEIAVGHQY	9	Unmodified	_SEIAVGHQY_					0	0	0		nc|ENSG00000125434|Q3KQZ1-3|SLC25A35;nc|ENSG00000125434|Q3KQZ1-2|SLC25A35;nc|ENSG00000125434|Q3KQZ1-4|SLC25A35;ENSG00000125434|ENST00000577745|SLC25A35	nc|ENSG00000125434|Q3KQZ1-3|SLC25A35	nc|ENSG00000125434|Q3KQZ1-3|SLC25A35	MULTI-MSMS	A375_MHC_IP_R2	2	502.7180480957031	2	502.245806	1002.47706	-0.65655	-0.00032975	0.15808	7.9396E-05	-0.49847	-0.00025036	502.2458424685467	30.32	0.60861	31.039	30.759	31.367	0.71857					20	11	2	0	0	0	0.13797	1	10721	10721		43.858	16.229	1	6229600			47148	3961	34282	34554	46099	46099					-0.024079934875658182
SEIAVPEERGL	11	Unmodified	_SEIAVPEERGL_					0	0	0			REV__ENST00000493544.1_1_2:242054361-242072488:-|nuORF	REV__ENST00000493544.1_1_2:242054361-242072488:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	400.6033935546875	3	400.547065	1198.61937	-0.40498	-0.00016221	1.1574	0.00046358	0.75237	0.00030136	400.5474434039222	31.338	1.265	31.338	30.351	31.616	0					36	24	2	0	0	0	0.7328	1	9890	9890		6.2344	0	1	2986000	+		47149	17907	34283	34555	46100	46100					0.028001744639368553
SEICGANHSF	10	Carbamidomethyl (C)	_SEIC(Carbamidomethyl (C))GANHSF_	SEIC(1)GANHSF		SEIC(130)GANHSF		0	1	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	A375_MHC_IP_R1	1	561.6375122070312	2	561.237655	1120.46076	-0.44051	-0.00024723	0.12929	7.2561E-05	-0.31123	-0.00017467	561.2377564528133	31.462	0.60783	31.462	31.262	31.87	0					35	11	4	0	0	0	0.0068576	1	10064	10064		132.38	101.74	1	18274000			47150	9304	34284	34556	46101	46101	47				-0.09465442715986683
SEICGANHSF	10	Carbamidomethyl (C)	_SEIC(Carbamidomethyl (C))GANHSF_	SEIC(1)GANHSF		SEIC(160)GANHSF		0	1	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	A375_MHC_IP_R2	2	561.6373291015625	2	561.237655	1120.46076	-0.63371	-0.00035566	0.01694	9.5076E-06	-0.61677	-0.00034615	561.2376616520398	30.83	0.55494	31.548	31.317	31.872	0.71857					29	10	4	0	0	0	2.5819E-05	1	10841	10841		155.95	117.34	1	20482000			47151	9304	34284	34556	46102	46102	47				-0.09465442715986683
SEIDIWFPV	9	Unmodified	_SEIDIWFPV_					0	0	0		ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	ENSG00000100888|ENST00000646647|CHD8	ENSG00000100888|ENST00000646647|CHD8	MULTI-SECPEP	A375_MHC_IP_R2	2	552.6787719726562	2	553.281857	1104.54916	-0.76284	-0.00042206	-0.91577	-0.00050668	-1.6786	-0.00092874	553.2802748823907	83.116	0.20306	83.855	83.694	83.898	0.73962					5	3	2	0	0	0	0.69504	1	31556	31556		12.532	0	1	1148100			47152	2228	34285	34557	46103	46103					0.001069208661419907
SEIDKRVQY	9	Unmodified	_SEIDKRVQY_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	A375_MHC_IP_R1	1	569.6983032226562	2	569.29857	1136.58259	-0.39163	-0.00022296	0.029368	1.6719E-05	-0.36226	-0.00020624	569.29854678661	24.674	0.40528	24.674	24.547	24.953	0					25	7	4	0	0	0	0.001114	1	7060	7060		152.89	101.26	1	58957000			47153	6672	34286	34558	46104	46104					0.01975922638052907
SEIDKRVQY	9	Unmodified	_SEIDKRVQY_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-SECPEP	A375_MHC_IP_R1	1	379.4477844238281	3	379.868139	1136.58259	0.2692	0.00010226	-0.024372	-9.2581E-06	0.24483	9.3003E-05	379.8681160833064	24.673	0.80807	24.673	24.245	25.053	0					38	15	5	0	0	0	0.16676	1	7155	7155		45.74	25.159	1	131560000			47154	6672	34286	34558	46105	46105					0.01975922638052907
SEIDKRVQY	9	Unmodified	_SEIDKRVQY_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	A375_MHC_IP_R2	2	380.2679748535156	3	379.868139	1136.58259	-0.24285	-9.2251E-05	-0.039862	-1.5142E-05	-0.28271	-0.00010739	379.8681101019258	24.088	1.069	24.731	24.245	25.314	0.64368					55	20	6	0	0	0	0.02114	1	7980	7980		67.081	42.199	1	91063000			47155	6672	34286	34558	46106	46106					0.01975922638052907
SEIDKRVQY	9	Unmodified	_SEIDKRVQY_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-SECPEP	A375_MHC_IP_R2	2	569.6981201171875	2	569.29857	1136.58259	-0.61349	-0.00034926	-0.46899	-0.00026699	-1.0825	-0.00061625	569.2982788851509	24.086	0.61022	24.73	24.602	25.212	0.64368					30	11	3	0	0	0	0.0085579	1	7860	7860		149.91	102.17	1	38922000			47156	6672	34286	34558	46107	46107					0.01975922638052907
SEIDKRVQY	9	Unmodified	_SEIDKRVQY_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-MATCH	A375_MHC_IP_R2	2		2	569.29857	1136.58259	-0.59881	-0.0003409	-0.37489	-0.00021342	-0.9737	-0.00055433	569.7996814958378	23.708	0.20277	24.338	24.232	24.435	0.63014	-0.16804	-0.00037904	NaN	152.89	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1027900			47157	6672	34286	34558							0.01975922638052907
SEIDMNDIKAF	11	Unmodified	_SEIDMNDIKAF_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000491192.1_1_9:75783887-75785020:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-SECPEP	A375_MHC_IP_R1	1	642.2025146484375	2	641.802828	1281.5911	-0.74408	-0.00047755	-0.16738	-0.00010743	-0.91146	-0.00058498	641.8026731056601	86.57	0.55608	86.57	86.325	86.881	0					12	10	2	0	0	0	0.78053	1	31774	31774		36.395	18.022	1	1695200			47158	4636	34287	34559	46108	46108					-0.03842891507656532
SEIDMSVKA	9	Unmodified	_SEIDMSVKA_					0	0	0		ENSG00000144136|ENST00000272542|SLC20A1;ENST00000490674.1_1_2:113416785-113418150:+|nuORF	ENSG00000144136|ENST00000272542|SLC20A1	ENSG00000144136|ENST00000272542|SLC20A1	MULTI-MSMS	A375_MHC_IP_R2	2	490.6414794921875	2	490.241875	978.469197	-0.59227	-0.00029036	0.098752	4.8412E-05	-0.49352	-0.00024195	490.24168815214813	39.96	0.35422	40.735	40.575	40.93	0.77451					13	6	3	0	0	0	0.073067	1	14798	14798		55.503	9.4818	1	2826800			47159	5466	34288	34560	46109	46109					-0.02089888799343953
SEIDQINKVF	10	Unmodified	_SEIDQINKVF_					0	0	0		nc|ENSG00000248333|P21127|CDK11B;nc|ENSG00000248333|P21127-9|CDK11B;nc|ENSG00000008128|Q9UQ88|CDK11A;ENSG00000248333|ENST00000341832|CDK11B;nc|ENSG00000248333|P21127-3|CDK11B;ENSG00000008128|ENST00000404249|CDK11A;nc|ENSG00000008128|Q9UQ88-3|CDK11A;nc|ENSG00000248333|P21127-8|CDK11B;nc|ENSG00000008128|Q9UQ88-4|CDK11A;nc|ENSG00000248333|P21127-6|CDK11B;ENST00000356937.7_1_1:1634348-1635645:-|nuORF;nc|ENSG00000248333|P21127-10|CDK11B;nc|ENSG00000248333|P21127-5|CDK11B;nc|ENSG00000248333|P21127-4|CDK11B;nc|ENSG00000008128|Q9UQ88-10|CDK11A;nc|ENSG00000248333|P21127-12|CDK11B;nc|ENSG00000008128|Q9UQ88-5|CDK11A;ENST00000463652.5_1_1:1635130-1635691:-|nuORF	nc|ENSG00000248333|P21127|CDK11B	nc|ENSG00000248333|P21127|CDK11B	MULTI-MSMS	A375_MHC_IP_R1	1	597.4637451171875	2	596.814053	1191.61355	-0.38973	-0.0002326	-0.55895	-0.00033359	-0.94868	-0.00056619	597.3149208047613	79.53	1.5313	79.53	79.161	80.693	0					39	29	2	0	0	0	0.56097	1	29025	29025		23.79	5.4167	1	2386200			47160	953	34289	34561	46110	46110					0.025410759522856097
SEIDQLFRI	9	Unmodified	_SEIDQLFRI_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;ENSG00000250506|ENST00000448471|CDK3;ENST00000556656.5_1_12:56361683-56365109:+|nuORF;chr10:60792053-60792123|447|10.09|0.49|4.36|+|1|CDK1,None|1;ENSG00000123374|ENST00000266970|CDK2;nc|ENSG00000123374|P24941-2|CDK2	ENSG00000170312|ENST00000395284|CDK1;ENSG00000123374|ENST00000266970|CDK2	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	A375_MHC_IP_R1	1	561.203369140625	2	560.803488	1119.59242	0.040284	2.2592E-05	-0.11168	-6.263E-05	-0.071394	-4.0038E-05	560.8034540825729	114.12	0.45972	114.12	113.85	114.31	0					18	8	3	0	0	0	0.0026724	1	41845	41845		152.89	42.211	1	5796800			47161	7492;3843	34290	34562	46111	46111					0.03741110643454704
SEIDQLFRI	9	Unmodified	_SEIDQLFRI_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;ENSG00000250506|ENST00000448471|CDK3;ENST00000556656.5_1_12:56361683-56365109:+|nuORF;chr10:60792053-60792123|447|10.09|0.49|4.36|+|1|CDK1,None|1;ENSG00000123374|ENST00000266970|CDK2;nc|ENSG00000123374|P24941-2|CDK2	ENSG00000170312|ENST00000395284|CDK1;ENSG00000123374|ENST00000266970|CDK2	ENSG00000170312|ENST00000395284|CDK1	MULTI-SECPEP	A375_MHC_IP_R2	2	561.2032470703125	2	560.803488	1119.59242	-0.40269	-0.00022583	-0.23319	-0.00013078	-0.63589	-0.00035661	560.8033548213621	113.26	0.61436	113.97	113.62	114.23	0.70985					22	11	3	0	0	0	0.10362	1	42718	42718		72.968	19.135	1	4274000			47162	7492;3843	34290	34562	46112	46112					0.03741110643454704
SEIDQLFRIF	10	Unmodified	_SEIDQLFRIF_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;ENSG00000250506|ENST00000448471|CDK3;ENST00000556656.5_1_12:56361683-56365109:+|nuORF;chr10:60792053-60792123|447|10.09|0.49|4.36|+|1|CDK1,None|1;ENSG00000123374|ENST00000266970|CDK2;nc|ENSG00000123374|P24941-2|CDK2	ENSG00000170312|ENST00000395284|CDK1;ENSG00000123374|ENST00000266970|CDK2	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	A375_MHC_IP_R1	1	634.7367553710938	2	634.337695	1266.66084	-0.88258	-0.00055985	0.49908	0.00031658	-0.3835	-0.00024327	634.3380226502765	130.29	0.61072	130.29	130.01	130.62	0					17	11	3	0	0	0	0.0013911	1	50155	50155		143.91	101.95	1	37320000			47163	7492;3843	34291	34563	46113	46113					0.03817355223281993
SEIDQLFRIF	10	Unmodified	_SEIDQLFRIF_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;ENSG00000250506|ENST00000448471|CDK3;ENST00000556656.5_1_12:56361683-56365109:+|nuORF;chr10:60792053-60792123|447|10.09|0.49|4.36|+|1|CDK1,None|1;ENSG00000123374|ENST00000266970|CDK2;nc|ENSG00000123374|P24941-2|CDK2	ENSG00000170312|ENST00000395284|CDK1;ENSG00000123374|ENST00000266970|CDK2	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	A375_MHC_IP_R2	2	634.7377319335938	2	634.337695	1266.66084	-0.81447	-0.00051665	1.5599	0.00098952	0.74545	0.00047286	634.3389739841908	130.05	0.9606	130.27	129.74	130.7	0.2142					23	14	4	0	0	0	3.2914E-05	1	51136	51136		171.46	115.96	1	23926000			47164	7492;3843	34291	34563	46114	46114					0.03817355223281993
SEIEAKVRY	9	Unmodified	_SEIEAKVRY_					0	0	0		nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	MULTI-MSMS	A375_MHC_IP_R1	1	548.1954345703125	2	547.795663	1093.57677	-0.64618	-0.00035398	3.393	0.0018587	2.7469	0.0015047	547.7957082174188	27.59	0.96	27.59	27.128	28.088	0					40	18	5	0	0	0	0.01185	1	8366	8366		93.938	37.761	1	13004000			47165	4857	34292	34564	46115	46115					0.03372824126381602
SEIEAKVRY	9	Unmodified	_SEIEAKVRY_					0	0	0		nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	MULTI-MSMS	A375_MHC_IP_R2	2	548.1950073242188	2	547.795663	1093.57677	-0.99088	-0.0005428	0.47756	0.0002616	-0.51332	-0.0002812	547.7958735929801	26.934	0.8179	27.594	27.058	27.876	0.65992					20	15	2	0	0	0	0.01185	1	9136	9136		93.938	37.761	1	10715000			47166	4857	34292	34564	46116	46116					0.03372824126381602
SEIEDVNTL	9	Unmodified	_SEIEDVNTL_					0	0	0		nc|ENSG00000119321|Q5T1M5-3|FKBP15;nc|ENSG00000119321|Q5T1M5-2|FKBP15;ENSG00000119321|ENST00000238256|FKBP15	nc|ENSG00000119321|Q5T1M5-3|FKBP15	nc|ENSG00000119321|Q5T1M5-3|FKBP15	MULTI-SECPEP	A375_MHC_IP_R1	1	509.67291259765625	2	510.248212	1018.48187	-0.57912	-0.00029549	-0.72468	-0.00036977	-1.3038	-0.00066526	510.24777238699323	65.68	0.50919	65.68	65.462	65.972	0					14	9	3	0	0	0	0.65246	1	23772	23772		10.824	6.8795	1	1176700			47167	3582	34293	34565	46117	46117					-0.026631541354504407
SEIEGANQL	9	Unmodified	_SEIEGANQL_					0	0	0		ENST00000525696.5_1_14:24683507-24684828:-|nuORF;ENST00000532557.5_1_14:24683254-24684828:-|nuORF;nc|ENSG00000213920|Q86V88-3|MDP1;nc|ENSG00000213920|Q86V88-2|MDP1;ENST00000528804.1_1_14:24683633-24685170:-|nuORF;ENSG00000213920|ENST00000288087|MDP1	ENST00000525696.5_1_14:24683507-24684828:-|nuORF	ENST00000525696.5_1_14:24683507-24684828:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	481.13507080078125	2	480.735271	959.45599	-0.49954	-0.00024015	-0.13535	-6.5069E-05	-0.63489	-0.00030521	480.7351162884587	46.59	0.60656	46.59	46.345	46.952	0					28	11	3	0	0	0	0.0078915	1	16354	16354		168.66	45.208	1	5538800			47168	9589	34294	34566	46118	46118					-0.025360035871017317
SEIEGANQL	9	Unmodified	_SEIEGANQL_					0	0	0		ENST00000525696.5_1_14:24683507-24684828:-|nuORF;ENST00000532557.5_1_14:24683254-24684828:-|nuORF;nc|ENSG00000213920|Q86V88-3|MDP1;nc|ENSG00000213920|Q86V88-2|MDP1;ENST00000528804.1_1_14:24683633-24685170:-|nuORF;ENSG00000213920|ENST00000288087|MDP1	ENST00000525696.5_1_14:24683507-24684828:-|nuORF	ENST00000525696.5_1_14:24683507-24684828:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	481.1348876953125	2	480.735271	959.45599	-0.5283	-0.00025397	-0.22799	-0.0001096	-0.7563	-0.00036358	480.73513837388487	45.895	0.55458	46.66	46.403	46.957	0.76519					24	10	3	0	0	0	1.5889E-08	1	17150	17150		183.04	46.705	1	7270600			47169	9589	34294	34566	46119	46119					-0.025360035871017317
SEIEGIQSL	9	Unmodified	_SEIEGIQSL_					0	0	0		nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18	nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	MULTI-MSMS	A375_MHC_IP_R2	2	488.65289306640625	2	488.253297	974.492041	-0.59906	-0.00029249	-0.41605	-0.00020314	-1.0151	-0.00049563	488.2531681604738	80.357	1.3231	81.102	80.657	81.981	0.74474					31	25	2	0	0	0	0.007896	1	30502	30502		129.77	26.419	1	5183300			47170	2547	34295	34567	46120	46120					0.0037745358977190335
SEIEGNVTF	9	Unmodified	_SEIEGNVTF_					0	0	0		ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2	ENSG00000185567|ENST00000333244|AHNAK2	ENSG00000185567|ENST00000333244|AHNAK2	MULTI-MSMS	A375_MHC_IP_R1	1	498.63720703125	2	498.237647	994.460741	-0.16183	-8.0629E-05	-0.021382	-1.0653E-05	-0.18321	-9.1282E-05	498.23767129059263	72.043	0.75896	72.043	71.715	72.474	0					20	14	2	0	0	0	0.0094788	2	26168	26168;26226		107.19	32.258	1	3214700			47171	8676	34296	34568	46121;46122	46121					-0.03671119444322812
SEIEGNVTF	9	Unmodified	_SEIEGNVTF_					0	0	0		ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2	ENSG00000185567|ENST00000333244|AHNAK2	ENSG00000185567|ENST00000333244|AHNAK2	MULTI-MSMS	A375_MHC_IP_R2	2	498.6371154785156	2	498.237647	994.460741	-0.74237	-0.00036988	0.1027	5.1167E-05	-0.63968	-0.00031871	498.2376383714447	71.306	0.86127	72.04	71.706	72.567	0.73421					29	16	3	0	0	0	0.02559	1	27010	27010		78.728	14.492	1	3347100			47172	8676	34296	34568	46123	46123					-0.03671119444322812
SEIEGRPETIF	11	Unmodified	_SEIEGRPETIF_					0	0	0		nc|ENSG00000146426|Q8IVF5-4|TIAM2;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2;nc|ENSG00000146426|Q8IVF5-3|TIAM2	nc|ENSG00000146426|Q8IVF5-4|TIAM2	nc|ENSG00000146426|Q8IVF5-4|TIAM2	MULTI-MSMS	A375_MHC_IP_R1	1	639.7215576171875	2	639.322242	1276.62993	-0.7217	-0.0004614	-0.016208	-1.0362E-05	-0.73791	-0.00047176	639.3222046290311	58.804	0.40786	58.804	58.633	59.041	0					16	7	3	0	0	0	0.57844	1	21159	21159		24.991	8.8419	1	3893600			47173	5623	34297	34569	46124	46124					0.0026815711837571143
SEIEGRPETIF	11	Unmodified	_SEIEGRPETIF_					0	0	0		nc|ENSG00000146426|Q8IVF5-4|TIAM2;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2;nc|ENSG00000146426|Q8IVF5-3|TIAM2	nc|ENSG00000146426|Q8IVF5-4|TIAM2	nc|ENSG00000146426|Q8IVF5-4|TIAM2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	639.322242	1276.62993	-1.0455	-0.00066841	0.49287	0.0003151	-0.55263	-0.00035331	639.3226075167066	58.223	0.55746	58.972	58.578	59.135	0.74894	0.083968	0.00032076	NaN	24.991	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3167300			47174	5623	34297	34569							0.0026815711837571143
SEIELFRVF	9	Unmodified	_SEIELFRVF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	A375_MHC_IP_R1	1	570.2120971679688	2	570.308406	1138.60226	-0.8211	-0.00046828	0.1359	7.7506E-05	-0.6852	-0.00039077	570.3083471314723	122.64	0.35274	122.64	122.33	122.68	0					9	6	2	0	0	0	0.009815	2	45620	45620;45640		137.42	77.034	1	73462000			47175	5456	34298	34570	46125;46126	46125					0.03850298648808348
SEIELFRVF	9	Unmodified	_SEIELFRVF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	A375_MHC_IP_R2	2	570.7078247070312	2	570.308406	1138.60226	-0.32664	-0.00018629	-0.58267	-0.0003323	-0.90932	-0.00051859	570.3079702401293	121.75	0.65928	122.19	121.87	122.53	0.44488					27	12	3	0	0	0	0.021859	1	46565	46565		99.755	48.9	1	67203000			47176	5456	34298	34570	46127	46127					0.03850298648808348
SEIENVHGF	9	Unmodified	_SEIENVHGF_					0	0	0		ENST00000471733.5_1_3:196807912-197024075:-|nuORF;nc|ENSG00000075711|Q12959-5|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959|DLG1;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959-2|DLG1;ENST00000485409.5_1_3:196921289-197023334:-|nuORF	ENST00000471733.5_1_3:196807912-197024075:-|nuORF	ENST00000471733.5_1_3:196807912-197024075:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	516.6427612304688	2	516.243264	1030.47197	-0.64172	-0.00033128	-0.091387	-4.7178E-05	-0.7331	-0.00037846	516.2431897852885	46.622	1.1714	46.622	46.345	47.517	0					43	22	2	0	0	0	0.44024	1	16605	16605		22.736	3.3743	1	33144000			47177	1620	34299	34571	46128	46128					-0.04204297350179331
SEIENVHGF	9	Unmodified	_SEIENVHGF_					0	0	0		ENST00000471733.5_1_3:196807912-197024075:-|nuORF;nc|ENSG00000075711|Q12959-5|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959|DLG1;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959-2|DLG1;ENST00000485409.5_1_3:196921289-197023334:-|nuORF	ENST00000471733.5_1_3:196807912-197024075:-|nuORF	ENST00000471733.5_1_3:196807912-197024075:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	516.6427001953125	2	516.243264	1030.47197	-0.72501	-0.00037428	0.030868	1.5935E-05	-0.69414	-0.00035835	516.2432353543438	45.863	1.1636	46.629	46.353	47.517	0.76519					51	22	3	0	0	0	0.025235	1	17118	17118		96.111	56.161	1	35027000			47178	1620	34299	34571	46129	46129					-0.04204297350179331
SEIESNRSF	9	Unmodified	_SEIESNRSF_					0	0	0		nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;TJP2|p.P416S|1|0.35|ENSG00000119139|chr9:69227800-69227800|C/T|missense_variant	nc|ENSG00000119139|Q9UDY2-6|TJP2	nc|ENSG00000119139|Q9UDY2-6|TJP2	MULTI-SECPEP	A375_MHC_IP_R1	1	535.15087890625	2	534.751453	1067.48835	-0.69914	-0.00037386	-0.62597	-0.00033474	-1.3251	-0.0007086	534.7512565120521	28.719	0.35326	28.719	28.592	28.945	0					15	6	3	0	0	0	0.14554	1	8913	8913		57.249	35.712	1	3635500			47179	14565	34300	34572	46130	46130					-0.042692161840932386
SEIESNRSF	9	Unmodified	_SEIESNRSF_					0	0	0		nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;TJP2|p.P416S|1|0.35|ENSG00000119139|chr9:69227800-69227800|C/T|missense_variant	nc|ENSG00000119139|Q9UDY2-6|TJP2	nc|ENSG00000119139|Q9UDY2-6|TJP2	MULTI-SECPEP	A375_MHC_IP_R2	2	535.15087890625	2	534.751453	1067.48835	-0.99632	-0.00053278	0.075251	4.0241E-05	-0.92107	-0.00049254	534.7514827152918	28.097	0.40649	28.775	28.553	28.96	0.67857					15	7	3	0	0	0	0.40377	1	9706	9706		34.932	9.9411	1	3313800			47180	14565	34300	34572	46131	46131					-0.042692161840932386
SEIEYYAML	9	Oxidation (M)	_SEIEYYAM(Oxidation (M))L_		SEIEYYAM(1)L		SEIEYYAM(44)L	0	0	1		ENSG00000156482|ENST00000287038|RPL30	ENSG00000156482|ENST00000287038|RPL30	ENSG00000156482|ENST00000287038|RPL30	MULTI-MSMS	A375_MHC_IP_R1	1	568.2113647460938	2	567.754815	1133.49508	-0.38288	-0.00021738	-1.3037	-0.00074019	-1.6866	-0.00095757	568.2547566664906	93.964	0.65652	93.964	93.738	94.394	0					19	12	2	0	0	0	0.13491	2	34589	34522;34589		44.407	30.454	1	1408400			47181	6194	34301	34573	46132;46133	46133		331			-0.06633039347752856
SEIFDELYK	9	Unmodified	_SEIFDELYK_					0	0	0		ENSG00000183578|ENST00000637513|TNFAIP8L3;nc|ENSG00000183578|Q5GJ75|TNFAIP8L3	ENSG00000183578|ENST00000637513|TNFAIP8L3	ENSG00000183578|ENST00000637513|TNFAIP8L3	MULTI-SECPEP	A375_MHC_IP_R1	1	382.2577209472656	3	381.857128	1142.54956	0.24004	9.166E-05	1.2175	0.0004649	1.4575	0.00055656	381.85747221397446	24.636	0.50545	24.636	24.447	24.953	0					20	9	3	0	0	0	0.50702	1	7066	7066		18.373	3.9677	1	6720100			47182	8506	34302	34574	46134	46134					-0.016017042046769348
SEIFDELYK	9	Unmodified	_SEIFDELYK_					0	0	0		ENSG00000183578|ENST00000637513|TNFAIP8L3;nc|ENSG00000183578|Q5GJ75|TNFAIP8L3	ENSG00000183578|ENST00000637513|TNFAIP8L3	ENSG00000183578|ENST00000637513|TNFAIP8L3	MULTI-SECPEP	A375_MHC_IP_R2	2	382.60467529296875	3	381.857128	1142.54956	-0.32553	-0.0001243	1.2635	0.00048248	0.93799	0.00035818	381.85774128745254	23.962	0.66262	24.592	24.333	24.996	0.63015					27	12	3	0	0	0	0.50702	1	7804	7804		18.373	3.9677	1	4698600			47183	8506	34302	34574	46135	46135					-0.016017042046769348
SEIFHSQSF	9	Unmodified	_SEIFHSQSF_					0	0	0		ENST00000517342.1_1_8:57389388-57389772:-|nuORF;nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10	ENST00000517342.1_1_8:57389388-57389772:-|nuORF;nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	ENST00000517342.1_1_8:57389388-57389772:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	541.6507568359375	2	541.251089	1080.48762	-0.4831	-0.00026148	0.075112	4.0654E-05	-0.40799	-0.00022083	541.2510468769646	54.364	0.86015	54.364	54.013	54.873	0					33	14	3	0	0	0	0.0015808	2	19378	19378;19394		155.03	76.298	1	16313000			47184	12958;8757	34303	34575	46136;46137	46136					-0.04940010833138331
SEIFHSQSF	9	Unmodified	_SEIFHSQSF_					0	0	0		ENST00000517342.1_1_8:57389388-57389772:-|nuORF;nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10	ENST00000517342.1_1_8:57389388-57389772:-|nuORF;nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	ENST00000517342.1_1_8:57389388-57389772:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	541.650146484375	2	541.251089	1080.48762	-1.3463	-0.00072869	0.50638	0.00027408	-0.83993	-0.00045461	541.2512107020304	53.569	0.71713	54.32	53.944	54.661	0.75105					34	13	4	0	0	0	0.0066517	1	20192	20192		165.72	90.791	1	13579000			47185	12958;8757	34303	34575	46138	46138					-0.04940010833138331
SEIFLHESY	9	Unmodified	_SEIFLHESY_					0	0	0		ENSG00000183060|ENST00000684762|LYSMD4;nc|ENSG00000183060|Q5XG99-2|LYSMD4	ENSG00000183060|ENST00000684762|LYSMD4	ENSG00000183060|ENST00000684762|LYSMD4	MULTI-MSMS	A375_MHC_IP_R2	2	563.1661987304688	2	562.766571	1123.51859	-0.74578	-0.0004197	-0.52917	-0.0002978	-1.2749	-0.0007175	562.7664285241099	62.136	0.60871	62.879	62.622	63.23	0.74263					16	11	2	0	0	0	0.0097266	1	23549	23549		111.29	65.266	1	2591100			47186	8461	34304	34576	46139	46139					-0.03822857518912315
SEIFLRKRE	9	Unmodified	_SEIFLRKRE_					0	0	0			REV__ENSG00000158486|ENST00000698260|DNAH3	REV__ENSG00000158486|ENST00000698260|DNAH3	MULTI-SECPEP	A375_MHC_IP_R2	2	589.7379760742188	2	589.33803	1176.66151	-0.57634	-0.00033966	0.1866	0.00010997	-0.38974	-0.00022969	589.3380439779703	31.956	0.30241	32.693	32.555	32.857	0.73692					8	5	2	0	0	0	0.79429	1	11366	11366		6.7232	5.3936	1	1890100	+		47187	20079	34305	34577	46140	46140					0.0802419466297124
SEIFLRKRE	9	Unmodified	_SEIFLRKRE_					0	0	0			REV__ENSG00000158486|ENST00000698260|DNAH3	REV__ENSG00000158486|ENST00000698260|DNAH3	MULTI-MATCH	A375_MHC_IP_R1	1		2	589.33803	1176.66151	-0.55171	-0.00032514	-0.155	-9.135E-05	-0.70671	-0.00041649	589.3379956804434	32.747	0.25079	32.747	32.535	32.785	0	0.026822	-0.00012203	NaN	6.7232	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1614500	+		47188	20079	34305	34577							0.0802419466297124
SEIFTDNQI	9	Unmodified	_SEIFTDNQI_					0	0	0		ZBTB40|p.L473F|1|0.21|ENSG00000184677|chr1:22508057-22508057|C/T|missense_variant;ENSG00000184677|ENST00000375647|ZBTB40	ZBTB40|p.L473F|1|0.21|ENSG00000184677|chr1:22508057-22508057|C/T|missense_variant	ZBTB40|p.L473F|1|0.21|ENSG00000184677|chr1:22508057-22508057|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	534.15576171875	2	533.756204	1065.49785	-0.48271	-0.00025765	0.29543	0.00015769	-0.18728	-9.9964E-05	533.7561177875498	78.595	0.65933	78.595	78.301	78.96	0					23	12	3	0	0	0	0.46045	1	28669	28669		36.127	3.3413	1	2698800			47189	8603	34306	34578	46141	46141					-0.032274478985755195
SEIGCHMNI	9	Unmodified	_SEIGCHMNI_					0	0	0		KLKB1|p.T332Hfs*10|1|0.1|ENSG00000164344|chr4:186251605-186251606|-/T|frameshift_variant;ENSG00000164344|ENST00000264690|KLKB1	KLKB1|p.T332Hfs*10|1|0.1|ENSG00000164344|chr4:186251605-186251606|-/T|frameshift_variant	KLKB1|p.T332Hfs*10|1|0.1|ENSG00000164344|chr4:186251605-186251606|-/T|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	502.2131652832031	2	502.22042	1002.42629	-0.731	-0.00036712	0.97903	0.00049169	0.24803	0.00012457	502.22068200288896	48.946	0.6121	49.703	49.332	49.944	0.75737					14	11	2	0	0	0	0.64808	2	18263	18263;18320		11.64	0	1	790210			47190	6830	34307	34579	46142;46143	46142					-0.07482982128442472
SEIGGITI	8	Unmodified	_SEIGGITI_					0	0	0		ENSG00000173757|ENST00000293328|STAT5B;nc|ENSG00000126561|P42229-2|STAT5A;ENST00000555222.5_1_12:57492966-57496222:-|nuORF;ENST00000591556.1_1_17:40458135-40460407:+|nuORF;ENSG00000126561|ENST00000590949|STAT5A;ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6	ENSG00000173757|ENST00000293328|STAT5B;ENSG00000126561|ENST00000590949|STAT5A;ENSG00000166888|ENST00000300134|STAT6	ENSG00000126561|ENST00000590949|STAT5A	MULTI-SECPEP	A375_MHC_IP_R2	2	789.8345947265625	1	789.435261	788.427984	-0.88193	-0.00069623	0.2871	0.00022665	-0.59483	-0.00046958	789.4352741262995	90.993	0.506	91.727	91.413	91.919	0.7345					11	9	2	0	0	0	0.46048	1	34694	34694		64.236	15.89	1	1712400			47191	7827;4049;7128	34308	34580	46144	46144					0.025307182234769243
SEIGGITI	8	Unmodified	_SEIGGITI_					0	0	0		ENSG00000173757|ENST00000293328|STAT5B;nc|ENSG00000126561|P42229-2|STAT5A;ENST00000555222.5_1_12:57492966-57496222:-|nuORF;ENST00000591556.1_1_17:40458135-40460407:+|nuORF;ENSG00000126561|ENST00000590949|STAT5A;ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6	ENSG00000173757|ENST00000293328|STAT5B;ENSG00000126561|ENST00000590949|STAT5A;ENSG00000166888|ENST00000300134|STAT6	ENSG00000126561|ENST00000590949|STAT5A	MULTI-MATCH	A375_MHC_IP_R1	1		1	789.435261	788.427984	-0.42249	-0.00033353	0.75512	0.00059612	0.33263	0.00026259	789.4358435368006	91.822	0.40326	91.822	91.604	92.007	0	0.047446	0.00017007	NaN	64.236	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1821400			47192	7827;4049;7128	34308	34580							0.025307182234769243
SEIGKAVGF	9	Unmodified	_SEIGKAVGF_					0	0	0		nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	MULTI-SECPEP	A375_MHC_IP_R1	1	454.647705078125	2	454.247818	906.481082	-0.25488	-0.00011578	0.061318	2.7853E-05	-0.19356	-8.7924E-05	454.24772246329945	53.411	0.81345	53.411	53.099	53.912	0					31	15	3	0	0	0	0.20645	1	19010	19010		56.177	22.075	1	6322000			47193	2013	34309	34581	46145	46145					0.02410096006144613
SEIGKAVGF	9	Unmodified	_SEIGKAVGF_					0	0	0		nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	MULTI-SECPEP	A375_MHC_IP_R2	2	454.64752197265625	2	454.247818	906.481082	-0.68392	-0.00031067	-0.018889	-8.5801E-06	-0.70281	-0.00031925	454.2476549381847	52.575	0.70767	53.328	53.032	53.74	0.75225					26	13	3	0	0	0	0.16764	1	19795	19795		51.63	9.5352	1	5490600			47194	2013	34309	34581	46146	46146					0.02410096006144613
SEIGVYNYI	9	Unmodified	_SEIGVYNYI_					0	0	0		ENST00000441178.2_1_10:105006485-105006641:+|nuORF;ENST00000359429.10_1_2:210884560-210884719:+|nuORF	ENST00000441178.2_1_10:105006485-105006641:+|nuORF	ENST00000441178.2_1_10:105006485-105006641:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	528.6790771484375	2	529.263665	1056.51278	-0.53992	-0.00028576	0.13234	7.0042E-05	-0.40758	-0.00021572	529.2638423638051	78.154	0.45816	78.897	78.624	79.082	0.74293					13	8	2	0	0	0	0.69507	1	29686	29686		9.3831	1.2276	1	1362800			47195	11981	34310	34582	46147	46147					-0.013219560305742561
SEIHNDRRFP	10	Unmodified	_SEIHNDRRFP_					0	0	0			REV__ENSG00000172640|ENST00000310248|OR10AD1	REV__ENSG00000172640|ENST00000310248|OR10AD1	MULTI-MSMS	A375_MHC_IP_R2	2	424.9466857910156	3	424.214421	1269.62143	-0.42438	-0.00018003	-1.7167	-0.00072827	-2.1411	-0.0009083	424.5477605591288	18.911	0.41046	19.514	19.423	19.833	0.60308					20	9	3	0	0	0	0.71455	1	5688	5688		5.7834	1.0675	1	46503000	+		47196	21160	34311	34583	46148	46148					-0.0025935200760613952
SEIHVDLGVQY	11	Unmodified	_SEIHVDLGVQY_					0	0	0		tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1	tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1	tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	421.2909851074219	3	420.547065	1258.61937	0.063995	2.6913E-05	-0.082162	-3.4553E-05	-0.018168	-7.6405E-06	420.88135095755376	25.004	0.35205	25.004	24.852	25.204	0					16	6	3	0	0	0	0.99411	1	7244	7244		2.2527	0	1	6980300			47197	29735	34312	34584	46149	46149					0.00040174463970288343
SEIIKLIGLL	10	Unmodified	_SEIIKLIGLL_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-MSMS	A375_MHC_IP_R1	1	549.8572998046875	2	549.860275	1097.706	-0.47847	-0.00026309	-3.71	-0.00204	-4.1885	-0.0023031	549.8570732791835	83.011	0.20055	83.011	82.874	83.075	0					5	3	2	0	0	0	0.71118	1	30341	30341		7.2892	0	1	701320	+		47198	19379	34313	34585	46150	46150					0.16105205756480245
SEIINSKNF	9	Unmodified	_SEIINSKNF_					0	0	0		ENSG00000170876|ENST00000306077|TMEM43	ENSG00000170876|ENST00000306077|TMEM43	ENSG00000170876|ENST00000306077|TMEM43	MULTI-SECPEP	A375_MHC_IP_R1	1	526.6740112304688	2	526.274564	1050.53457	-0.3199	-0.00016835	0.3158	0.0001662	-0.0040988	-2.1571E-06	526.2748131107138	44.139	1.2734	44.139	43.706	44.98	0					47	24	3	0	0	0	0.018833	1	15356	15356		97.741	18.145	1	8026600			47199	7551	34314	34586	46151	46151					0.011328487179980584
SEIINSKNF	9	Unmodified	_SEIINSKNF_					0	0	0		ENSG00000170876|ENST00000306077|TMEM43	ENSG00000170876|ENST00000306077|TMEM43	ENSG00000170876|ENST00000306077|TMEM43	MULTI-SECPEP	A375_MHC_IP_R2	2	526.674072265625	2	526.274564	1050.53457	-0.32765	-0.00017243	-0.84523	-0.00044482	-1.1729	-0.00061726	526.274316601401	43.312	0.55741	44.085	43.724	44.282	0.7724					25	10	3	0	0	0	0.011308	1	16121	16121		128.93	36.441	1	9294500			47200	7551	34314	34586	46152	46152					0.011328487179980584
SEIKRWLDP	9	Unmodified	_SEIKRWLDP_					0	0	0			REV__nc|ENSG00000053747|Q16787-3|LAMA3	REV__nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-SECPEP	A375_MHC_IP_R2	2	572.1114501953125	2	572.31148	1142.60841	-0.19571	-0.00011201	0.076025	4.351E-05	-0.11969	-6.8498E-05	572.3115607284783	46.116	0.30411	46.881	46.704	47.008	0.76519					10	5	2	0	0	0	0.73363	1	17227	17227		10.824	2.9138	1	1716900	+		47201	16399	34315	34587	46153	46153					0.04280816880304883
SEILPPTLRY	10	Unmodified	_SEILPPTLRY_					0	0	0		nc|ENSG00000145715|P20936-2|RASA1;nc|ENSG00000145715|P20936-4|RASA1;ENSG00000145715|ENST00000274376|RASA1;ENST00000515800.6_1_5:86667940-86686697:+|nuORF	nc|ENSG00000145715|P20936-2|RASA1	nc|ENSG00000145715|P20936-2|RASA1	MULTI-SECPEP	A375_MHC_IP_R1	1	595.2338256835938	2	594.834788	1187.65502	-0.47663	-0.00028352	0.11918	7.089E-05	-0.35746	-0.00021263	594.8347607244501	81	1.6714	81	80.34	82.011	0					73	32	3	0	0	0	0.51493	1	29668	29668		45.7	7.524	1	4483800			47202	5572	34316	34588	46154	46154					0.06870256711613365
SEILPPTLRY	10	Unmodified	_SEILPPTLRY_					0	0	0		nc|ENSG00000145715|P20936-2|RASA1;nc|ENSG00000145715|P20936-4|RASA1;ENSG00000145715|ENST00000274376|RASA1;ENST00000515800.6_1_5:86667940-86686697:+|nuORF	nc|ENSG00000145715|P20936-2|RASA1	nc|ENSG00000145715|P20936-2|RASA1	MULTI-SECPEP	A375_MHC_IP_R2	2	595.2344360351562	2	594.834788	1187.65502	-0.56037	-0.00033333	-0.153	-9.1011E-05	-0.71337	-0.00042434	594.8346682816266	80.292	1.6272	81.036	80.149	81.776	0.74474					53	31	2	0	0	0	0.68963	1	30483	30483		28.495	2.2264	1	5822900			47203	5572	34316	34588	46155	46155					0.06870256711613365
SEILQKEVY	9	Unmodified	_SEILQKEVY_					0	0	0		ENSG00000136631|ENST00000644510|VPS45;nc|ENSG00000136631|Q9NRW7-2|VPS45;ENST00000460366.5_1_1:150039914-150049098:+|nuORF;ENST00000497638.2_1_1:150039914-150048408:+|nuORF;ENST00000478999.1_1_1:150039540-150040875:+|nuORF	ENSG00000136631|ENST00000644510|VPS45	ENSG00000136631|ENST00000644510|VPS45	MULTI-MSMS	A375_MHC_IP_R1	1	555.197998046875	2	554.797872	1107.58119	-0.44049	-0.00024438	-0.092743	-5.1453E-05	-0.53324	-0.00029584	554.7978184763039	45.886	1.5711	45.886	45.484	47.055	0					68	30	4	0	0	0	0.0083527	1	16013	16013		128.93	77.303	1	42343000			47204	4803	34317	34589	46156	46156					0.0317028854929049
SEINIAPRI	9	Unmodified	_SEINIAPRI_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MSMS	A375_MHC_IP_R2	2	506.6955261230469	2	506.792924	1011.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.912	1	64.653	64.153	65.153	0.74022								0	0	0	0.084521	1	24236	24236		45.7	15.063	1				47205	3941	34318	34590	46157	46157					0.06597145334569632
SEINKPNFY	9	Unmodified	_SEINKPNFY_					0	0	0		ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	556.6746826171875	2	556.274564	1110.53457	-0.36096	-0.00020079	0.22236	0.00012369	-0.1386	-7.7099E-05	556.2746324086181	45.662	0.86042	45.662	45.334	46.195	0					52	16	4	0	0	0	0.083712	1	15950	15950		74.929	56.783	1	43558000			47206	1436	34319	34591	46158	46158					-0.016271512820139833
SEINKPNFY	9	Unmodified	_SEINKPNFY_					0	0	0		ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	556.674072265625	2	556.274564	1110.53457	-0.8893	-0.00049469	0.12979	7.2197E-05	-0.75951	-0.0004225	556.274545518601	44.903	1.2168	45.672	45.39	46.607	0.7691					37	23	2	0	0	0	0.010802	1	16733	16733		139.14	139.14	1	47559000			47207	1436	34319	34591	46159	46159					-0.016271512820139833
SEINSLPTI	9	Unmodified	_SEINSLPTI_					0	0	0		nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10;nc|ENSG00000115761|Q9BSC4-3|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	MULTI-MSMS	A375_MHC_IP_R1	1	487.6634216308594	2	487.263665	972.512776	-0.18609	-9.0673E-05	0.14382	7.008E-05	-0.042263	-2.0593E-05	487.2636558934424	91.936	1.2666	91.936	91.554	92.821	0					48	24	4	0	0	0	0.021889	1	33731	33731		81.89	25.713	1	16087000			47208	3338	34320	34592	46160	46160					0.025420439694244124
SEINSLPTI	9	Unmodified	_SEINSLPTI_					0	0	0		nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10;nc|ENSG00000115761|Q9BSC4-3|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	MULTI-MSMS	A375_MHC_IP_R2	2	487.6998291015625	2	487.263665	972.512776	-0.49259	-0.00024002	0.45758	0.00022296	-0.035011	-1.706E-05	487.26381147841914	91.21	1.2654	91.945	91.566	92.831	0.7345					57	24	4	0	0	0	0.010171	2	34705	34652;34705		96.111	27.006	1	17389000			47209	3338	34320	34592	46161;46162	46162					0.025420439694244124
SEIPDHEFF	9	Unmodified	_SEIPDHEFF_					0	0	0		ENST00000470998.1_1_X:71550718-71682242:-|nuORF;nc|ENSG00000147099|Q9BY41-4|HDAC8;ENSG00000147099|ENST00000373573|HDAC8	ENST00000470998.1_1_X:71550718-71682242:-|nuORF	ENST00000470998.1_1_X:71550718-71682242:-|nuORF	MSMS	A375_MHC_IP_R1	1	560.7274780273438	2	560.750921	1119.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.639	1	76.639	76.139	77.139	0								0	0	0	0.15069	1	27940	27940		20.454	4.6064	1				47210	5656	34321	34593	46163	46163					-0.06767430553009035
SEIPPSHMY	9	Unmodified	_SEIPPSHMY_					0	0	0		nc|ENSG00000099954|Q9BXF3|CECR2;ENSG00000099954|ENST00000262608|CECR2;CECR2|p.L825Pfs*4|1|0.36|ENSG00000099954|chr22:17542557-17542557|T/-|frameshift_variant	nc|ENSG00000099954|Q9BXF3|CECR2	nc|ENSG00000099954|Q9BXF3|CECR2	MSMS	A375_MHC_IP_R2	2	530.6767578125	2	530.742042	1059.46953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.302	1	78.045	77.545	78.545	0.74293								0	0	0	0.15486	1	29354	29354		12.532	0.89125	1				47211	14503	34322	34594	46164	46164					-0.057824690794859634
SEIPQTERM	9	Unmodified	_SEIPQTERM_					0	0	0		ENST00000552207.1_1_12:56188062-56211500:-|nuORF;ENSG00000205323|ENST00000336133|SARNP	ENST00000552207.1_1_12:56188062-56211500:-|nuORF	ENST00000552207.1_1_12:56188062-56211500:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	546.1630859375	2	545.763506	1089.51246	-0.81914	-0.00044706	-0.20279	-0.00011068	-1.0219	-0.00055773	545.763550039937	30.674	0.40266	31.392	31.165	31.567	0.71857					13	7	2	0	0	0	0.39434	1	10825	10825		24.991	6.8446	1	4001900			47212	9508	34323	34595	46165	46165					-0.028716990220800653
SEIPQTERM	9	Unmodified	_SEIPQTERM_					0	0	0		ENST00000552207.1_1_12:56188062-56211500:-|nuORF;ENSG00000205323|ENST00000336133|SARNP	ENST00000552207.1_1_12:56188062-56211500:-|nuORF	ENST00000552207.1_1_12:56188062-56211500:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	545.763506	1089.51246	-0.59921	-0.00032703	-0.53875	-0.00029403	-1.138	-0.00062106	545.7632748188023	31.324	0.35537	31.324	31.109	31.465	0	-0.034299	-0.00010767	NaN	24.991	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3229800			47213	9508	34323	34595							-0.028716990220800653
SEIQDVNY	8	Unmodified	_SEIQDVNY_					0	0	0		nc|ENSG00000146833|Q9C037-3|TRIM4;ENSG00000146833|ENST00000349062|TRIM4;nc|ENSG00000146833|Q9C037|TRIM4	nc|ENSG00000146833|Q9C037-3|TRIM4	nc|ENSG00000146833|Q9C037-3|TRIM4	MULTI-MSMS	A375_MHC_IP_R1	1	484.1607360839844	2	484.221997	966.429441	-0.13543	-6.558E-05	-0.28288	-0.00013698	-0.41831	-0.00020256	484.2218048323023	42.616	0.45408	42.616	42.336	42.79	0					14	8	2	0	0	0	0.76654	1	14705	14705		15.847	3.3156	1	1328000			47214	5640	34324	34596	46166	46166					-0.05511692478432906
SEIRAAEKKF	10	Unmodified	_SEIRAAEKKF_					0	0	0		ATP13A1|p.G798Afs*55|1|0.25|ENSG00000105726|chr19:19649883-19649883|C/-|frameshift_variant;ENSG00000105726|ENST00000357324|ATP13A1;ENST00000474955.5_1_19:19767512-19770537:-|nuORF;nc|ENSG00000105726|Q9HD20-2|ATP13A1	ATP13A1|p.G798Afs*55|1|0.25|ENSG00000105726|chr19:19649883-19649883|C/-|frameshift_variant	ATP13A1|p.G798Afs*55|1|0.25|ENSG00000105726|chr19:19649883-19649883|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	393.5939025878906	3	393.555784	1177.64552	-0.081248	-3.1975E-05	-1.6611	-0.00065375	-1.7424	-0.00068573	393.55516085642626	19.596	0.64767	19.596	19.23	19.877	0					44	13	4	0	0	0	0.094387	2	4929	4832;4929		64.86	43.989	1	46465000			47215	203	34325	34597	46167;46168	46168					0.06380488426066222
SEIRAAEKKF	10	Unmodified	_SEIRAAEKKF_					0	0	0		ATP13A1|p.G798Afs*55|1|0.25|ENSG00000105726|chr19:19649883-19649883|C/-|frameshift_variant;ENSG00000105726|ENST00000357324|ATP13A1;ENST00000474955.5_1_19:19767512-19770537:-|nuORF;nc|ENSG00000105726|Q9HD20-2|ATP13A1	ATP13A1|p.G798Afs*55|1|0.25|ENSG00000105726|chr19:19649883-19649883|C/-|frameshift_variant	ATP13A1|p.G798Afs*55|1|0.25|ENSG00000105726|chr19:19649883-19649883|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	393.9553527832031	3	393.555784	1177.64552	-0.43872	-0.00017266	-1.9233	-0.00075693	-2.362	-0.00092959	393.55460961840237	18.887	0.31025	19.49	19.423	19.733	0.60308					15	6	4	0	0	0	0.92055	1	5713	5713		16.275	5.9593	1	71509000			47216	203	34325	34597	46169	46169					0.06380488426066222
SEIRHTADRW	10	Unmodified	_SEIRHTADRW_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	A375_MHC_IP_R1	1	424.6141052246094	3	424.214421	1269.62143	-0.06347	-2.6925E-05	0.06504	2.7591E-05	0.0015706	6.6627E-07	424.2144463103993	20.133	0.55766	20.133	19.827	20.384	0					28	10	3	0	0	0	0.013417	1	5083	5083		90.104	70.96	1	12037000			47217	2672	34326	34598	46170	46170					-0.0025935200760613952
SEIRHTADRW	10	Unmodified	_SEIRHTADRW_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-SECPEP	A375_MHC_IP_R1	1	424.94873046875	3	424.214421	1269.62143	0.27553	0.00011689	-0.63051	-0.00026747	-0.35497	-0.00015059	424.5483693830597	22.342	0.25355	22.342	22.216	22.469	0					6	4	2	0	0	0	0.82984	1	6015	6015		28.271	17.205	1	1761400			47218	2672	34326	34598	46171	46171					-0.0025935200760613952
SEIRHTADRW	10	Unmodified	_SEIRHTADRW_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-SECPEP	A375_MHC_IP_R2	2	424.6140441894531	3	424.214421	1269.62143	-0.42438	-0.00018003	-1.7167	-0.00072827	-2.1411	-0.0009083	424.5477605591288	18.911	0.41046	19.514	19.423	19.833	0.60308					20	9	3	0	0	0	0.15025	1	5800	5800		85.729	67.389	1	46503000			47219	2672	34326	34598	46172	46172					-0.0025935200760613952
SEISQQVRF	9	Unmodified	_SEISQQVRF_					0	0	0		ATAD5|p.L1646*|1|0.09|ENSG00000176208|chr17:30893788-30893788|T/-|frameshift_variant;ATAD5|p.C1638Mfs*14|1|0.5|ENSG00000176208|chr17:30893757-30893758|-/A|frameshift_variant;ENSG00000176208|ENST00000321990|ATAD5;ATAD5|p.K780Nfs*13|1|0.15|ENSG00000176208|chr17:30844005-30844005|A/-|frameshift_variant;nc|ENSG00000176208|Q96QE3-2|ATAD5	ATAD5|p.L1646*|1|0.09|ENSG00000176208|chr17:30893788-30893788|T/-|frameshift_variant	ATAD5|p.L1646*|1|0.09|ENSG00000176208|chr17:30893788-30893788|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6851806640625	2	547.285463	1092.55637	-0.35931	-0.00019665	-0.46948	-0.00025694	-0.82879	-0.00045359	547.2853212208233	49.819	0.76476	49.819	49.49	50.254	0					23	14	2	0	0	0	0.38578	1	17658	17658		34.402	11.665	1	2647100			47220	195	34327	34599	46173	46173					0.01379653466574382
SEISQQVRF	9	Unmodified	_SEISQQVRF_					0	0	0		ATAD5|p.L1646*|1|0.09|ENSG00000176208|chr17:30893788-30893788|T/-|frameshift_variant;ATAD5|p.C1638Mfs*14|1|0.5|ENSG00000176208|chr17:30893757-30893758|-/A|frameshift_variant;ENSG00000176208|ENST00000321990|ATAD5;ATAD5|p.K780Nfs*13|1|0.15|ENSG00000176208|chr17:30844005-30844005|A/-|frameshift_variant;nc|ENSG00000176208|Q96QE3-2|ATAD5	ATAD5|p.L1646*|1|0.09|ENSG00000176208|chr17:30893788-30893788|T/-|frameshift_variant	ATAD5|p.L1646*|1|0.09|ENSG00000176208|chr17:30893788-30893788|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	547.6846923828125	2	547.285463	1092.55637	-0.97242	-0.00053219	0.12185	6.6689E-05	-0.85056	-0.0004655	547.2854564098628	49.131	0.76095	49.889	49.536	50.297	0.75736					24	14	3	0	0	0	0.11711	1	18436	18436		43.772	7.6454	1	2428200			47221	195	34327	34599	46174	46174					0.01379653466574382
SEISSATKL	9	Unmodified	_SEISSATKL_					0	0	0		nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX;nc|ENSG00000085224|P46100-6|ATRX;ATRX|p.A1790Vfs*21|1|0.33|ENSG00000085224|chrX:77618885-77618886|-/CACA|frameshift_variant;nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX	nc|ENSG00000085224|P46100-4|ATRX	nc|ENSG00000085224|P46100-4|ATRX	MULTI-SECPEP	A375_MHC_IP_R1	1	468.65545654296875	2	468.25584	934.497126	-0.25888	-0.00012122	-0.12755	-5.9726E-05	-0.38643	-0.00018095	468.25572255205054	33.57	0.5055	33.57	33.342	33.848	0					22	9	3	0	0	0	0.062502	1	10974	10974		83.429	41.589	1	12576000			47222	1808	34328	34600	46175	46175					0.02725757452367361
SEISSATKL	9	Unmodified	_SEISSATKL_					0	0	0		nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX;nc|ENSG00000085224|P46100-6|ATRX;ATRX|p.A1790Vfs*21|1|0.33|ENSG00000085224|chrX:77618885-77618886|-/CACA|frameshift_variant;nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX	nc|ENSG00000085224|P46100-4|ATRX	nc|ENSG00000085224|P46100-4|ATRX	MULTI-SECPEP	A375_MHC_IP_R2	2	468.6555480957031	2	468.25584	934.497126	-0.69149	-0.0003238	0.13595	6.3658E-05	-0.55554	-0.00026014	468.25581870083016	32.807	0.5591	33.544	33.317	33.876	0.73692					21	10	3	0	0	0	0.048303	1	11710	11710		83.429	83.429	1	10053000			47223	1808	34328	34600	46176	46176					0.02725757452367361
SEIVGKRI	8	Unmodified	_SEIVGKRI_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000426405.1_1_X:73629614-73629932:+|nuORF;ENST00000415804.2_1_4:4509290-4509386:+|nuORF;ENST00000463499.1_1_4:42474097-42474295:+|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MULTI-SECPEP	A375_MHC_IP_R1	1	451.6768493652344	2	451.276909	900.539266	-0.47733	-0.00021541	0.24756	0.00011172	-0.22977	-0.00010369	451.27690414095883	23.559	0.2037	23.559	23.432	23.635	0					6	3	2	0	0	0	0.92867	1	6510	6510		18.146	0	1	5145500			47224	7653	34329	34601	46177	46177					0.08501777651417797
SEIVKQSVF	9	Unmodified	_SEIVKQSVF_					0	0	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1870727539062	2	518.787307	1035.56006	-0.35559	-0.00018448	-0.032791	-1.7012E-05	-0.38838	-0.00020149	518.787230599782	51.652	0.71201	51.652	51.322	52.034	0					36	13	4	0	0	0	0.10495	1	18303	18303		57.249	15.409	1	20091000			47225	2241	34330	34602	46178	46178					0.04370323240414109
SEIVKQSVF	9	Unmodified	_SEIVKQSVF_					0	0	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1867065429688	2	518.787307	1035.56006	-0.79093	-0.00041032	-0.3614	-0.00018749	-1.1523	-0.00059781	518.7869035191443	50.935	1.0133	51.689	51.006	52.019	0.75406					45	19	4	0	0	0	0.23313	1	19104	19104		49.527	15.126	1	18893000			47226	2241	34330	34602	46179	46179					0.04370323240414109
SEIVNHES	8	Unmodified	_SEIVNHES_					0	0	0		ENST00000526567.5_1_11:108094397-108098365:+|nuORF	ENST00000526567.5_1_11:108094397-108098365:+|nuORF	ENST00000526567.5_1_11:108094397-108098365:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	457.660400390625	2	457.714339	913.414125	-0.16372	-7.4937E-05	1.1533	0.0005279	0.98961	0.00045296	457.7147383411559	43.394	0.45641	44.167	43.876	44.333	0.7724					11	8	2	0	0	0	0.76654	1	16116	16116		15.847	1.9411	1	736860			47227	13084	34331	34603	46180	46180					-0.04604559275617248
SEIYQIFRRRR	11	Unmodified	_SEIYQIFRRRR_					0	0	0			REV__ENST00000529590.5_1_11:68034666-68035676:-|nuORF	REV__ENST00000529590.5_1_11:68034666-68035676:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	382.11907958984375	4	381.719296	1522.84808	0.33093	0.00012632	-0.86327	-0.00032953	-0.53234	-0.00020321	381.71888249563455	19.997	0.60909	19.997	19.623	20.232	0					25	11	3	0	0	0	1.0005	1	5056	5056		0.36667	0	1	2857100	+		47228	25826	34332	34604	46181	46181					0.10756811551323153
SEIYYTEIRER	11	Unmodified	_SEIYYTEIRER_					0	0	0		NLRP1|p.G213E|1|0.25|ENSG00000091592|chr17:5581873-5581873|C/T|missense_variant	NLRP1|p.G213E|1|0.25|ENSG00000091592|chr17:5581873-5581873|C/T|missense_variant	NLRP1|p.G213E|1|0.25|ENSG00000091592|chr17:5581873-5581873|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	730.263916015625	2	729.864805	1457.71506	-0.53579	-0.00039105	-0.26167	-0.00019098	-0.79746	-0.00058204	729.8645393928005	87.929	1.0692	87.929	87.39	88.46	0					42	20	4	0	0	0	0.62223	1	32253	32253		21.59	1.9642	1	20313000			47229	15000	34333	34605	46182	46182					0.0045090258415712015
SEIYYTEIRER	11	Unmodified	_SEIYYTEIRER_					0	0	0		NLRP1|p.G213E|1|0.25|ENSG00000091592|chr17:5581873-5581873|C/T|missense_variant	NLRP1|p.G213E|1|0.25|ENSG00000091592|chr17:5581873-5581873|C/T|missense_variant	NLRP1|p.G213E|1|0.25|ENSG00000091592|chr17:5581873-5581873|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	730.263916015625	2	729.864805	1457.71506	-0.69599	-0.00050798	-0.23699	-0.00017297	-0.93298	-0.00068095	729.8644742356511	87.207	0.80948	87.94	87.458	88.268	0.733					33	15	3	0	0	0	0.50535	1	33129	33129		30.703	5.8219	1	17254000			47230	15000	34333	34605	46183	46183					0.0045090258415712015
SEKALANQF	9	Unmodified	_SEKALANQF_					0	0	0		ENSG00000053501|ENST00000263897|USE1;ENST00000601592.5_1_19:17326774-17328282:+|nuORF;nc|ENSG00000053501|Q9NZ43-3|USE1;nc|ENSG00000053501|Q9NZ43-2|USE1	ENSG00000053501|ENST00000263897|USE1	ENSG00000053501|ENST00000263897|USE1	MULTI-SECPEP	A375_MHC_IP_R1	1	504.61572265625	2	504.261456	1006.50836	-0.23714	-0.00011958	0.62267	0.00031399	0.38553	0.00019441	504.26176280463267	35.263	0.50902	35.263	35.064	35.573	0					15	9	2	0	0	0	0.27742	1	11738	11738		36.506	7.4246	1	2232900			47231	1248	34334	34606	46184	46184					0.005365795465195333
SEKALANQF	9	Unmodified	_SEKALANQF_					0	0	0		ENSG00000053501|ENST00000263897|USE1;ENST00000601592.5_1_19:17326774-17328282:+|nuORF;nc|ENSG00000053501|Q9NZ43-3|USE1;nc|ENSG00000053501|Q9NZ43-2|USE1	ENSG00000053501|ENST00000263897|USE1	ENSG00000053501|ENST00000263897|USE1	MULTI-SECPEP	A375_MHC_IP_R2	2	504.6154479980469	2	504.261456	1006.50836	-0.8947	-0.00045116	1.1081	0.00055876	0.21337	0.00010759	504.26199539500357	34.512	0.40728	35.264	35.057	35.464	0.75225					10	7	2	0	0	0	0.4465	1	12485	12485		31.268	6.5945	1	2954200			47232	1248	34334	34606	46185	46185					0.005365795465195333
SEKAVYISL	9	Unmodified	_SEKAVYISL_					0	0	0			REV__ENST00000469599.6_1_Y:21868632-21871788:-|nuORF	REV__ENST00000469599.6_1_Y:21868632-21871788:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	504.6154479980469	2	505.281857	1008.54916	-0.89385	-0.00045165	0.43652	0.00022056	-0.45734	-0.00023108	505.2820688698988	34.637	0.3535	35.401	35.223	35.576	0.76338					9	6	2	0	0	0	0.65527	1	12485	12485		8.1555	0	1	1580300	+		47233	25096	34335	34607	46186	46186					0.0452292086615671
SEKAVYISL	9	Unmodified	_SEKAVYISL_					0	0	0			REV__ENST00000469599.6_1_Y:21868632-21871788:-|nuORF	REV__ENST00000469599.6_1_Y:21868632-21871788:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	505.281857	1008.54916	-0.18185	-9.1885E-05	-0.24673	-0.00012467	-0.42858	-0.00021655	505.28160068435017	35.547	0.40876	35.547	35.319	35.727	0	0.073333	-0.00031193	NaN	8.1555	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1420700	+		47234	25096	34335	34607							0.0452292086615671
SEKEDKCEEE	10	Unmodified	_SEKEDKCEEE_					0	0	0		TPM4|p.Y185C|1|0.34|ENSG00000167460|chr19:16093558-16093558|A/G|missense_variant;ENST00000368528.3_1_3:27674554-27675208:+|nuORF	TPM4|p.Y185C|1|0.34|ENSG00000167460|chr19:16093558-16093558|A/G|missense_variant	TPM4|p.Y185C|1|0.34|ENSG00000167460|chr19:16093558-16093558|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	613.6466674804688	2	613.248083	1224.48161	-0.98376	-0.00060329	-1.9874	-0.0012187	-2.9711	-0.001822	613.247063648763	25.967	0.40742	26.627	26.5	26.907	0.65992					12	7	2	0	0	0	0.93961	1	8775	8775		1.3295	0.92882	1	2315900			47235	11117	34336	34608	46187	46187					-0.1216494191764923
SEKEKGEIELA	11	Unmodified	_SEKEKGEIELA_					0	0	0		nc|ENSG00000133958|Q9P2D8-2|UNC79;nc|ENSG00000133958|Q9P2D8|UNC79;nc|ENSG00000133958|Q9P2D8-3|UNC79	nc|ENSG00000133958|Q9P2D8-2|UNC79	nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-SECPEP	A375_MHC_IP_R1	1	411.28094482421875	3	411.550475	1231.6296	0.23942	9.8534E-05	-1.991	-0.0008194	-1.7516	-0.00072087	411.54974854229243	20.545	0.61232	20.545	20.384	20.997	0					15	11	2	0	0	0	0.85086	1	5280	5280		18.34	5.4838	1	1750500			47236	14608	34337	34609	46188	46188					0.02304737398526413
SEKGTLIRIF	10	Unmodified	_SEKGTLIRIF_					0	0	0		ENSG00000141580|ENST00000392325|WDR45B	ENSG00000141580|ENST00000392325|WDR45B	ENSG00000141580|ENST00000392325|WDR45B	MULTI-MSMS	A375_MHC_IP_R2	2	388.92816162109375	3	388.564279	1162.67101	-0.55672	-0.00021632	0.16864	6.5529E-05	-0.38808	-0.00015079	388.5643083882884	24.84	0.66101	25.484	25.263	25.924	0.64368					38	12	5	0	0	0	0.72006	1	8150	8150		3.3196	0.47636	1	57710000			47237	5262	34338	34610	46189	46189					0.0961796294850501
SEKHFFTSF	9	Unmodified	_SEKHFFTSF_					0	0	0		ENSG00000023171|ENST00000635736|GRAMD1B;nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;nc|ENSG00000089351|Q96CP6-2|GRAMD1A;nc|ENSG00000089351|Q96CP6-3|GRAMD1A;ENSG00000089351|ENST00000317991|GRAMD1A	ENSG00000023171|ENST00000635736|GRAMD1B;nc|ENSG00000089351|Q96CP6-2|GRAMD1A	ENSG00000023171|ENST00000635736|GRAMD1B	MULTI-MSMS	A375_MHC_IP_R2	2	566.13818359375	2	565.269281	1128.52401	-0.7256	-0.00041016	0.26258	0.00014843	-0.46303	-0.00026173	565.77107855172	54.3	0.76185	55.051	54.608	55.37	0.75075					21	14	3	0	0	0	0.34064	1	20466	20466		27.629	8.3718	1	2279400			47238	1072;1927	34339	34611	46190	46190					-0.03511133936422084
SEKHFFTSF	9	Unmodified	_SEKHFFTSF_					0	0	0		ENSG00000023171|ENST00000635736|GRAMD1B;nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;nc|ENSG00000089351|Q96CP6-2|GRAMD1A;nc|ENSG00000089351|Q96CP6-3|GRAMD1A;ENSG00000089351|ENST00000317991|GRAMD1A	ENSG00000023171|ENST00000635736|GRAMD1B;nc|ENSG00000089351|Q96CP6-2|GRAMD1A	ENSG00000023171|ENST00000635736|GRAMD1B	MULTI-MATCH	A375_MHC_IP_R1	1		2	565.269281	1128.52401	-0.41136	-0.00023253	0.20876	0.00011801	-0.2026	-0.00011452	565.7712860231304	55.232	0.50694	55.232	54.924	55.431	0	0.090718	-1.8454E-05	NaN	27.629	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1819200			47239	1072;1927	34339	34611							-0.03511133936422084
SEKIKELPQ	9	Unmodified	_SEKIKELPQ_					0	0	0			REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-MSMS	A375_MHC_IP_R1	1	358.27313232421875	3	357.873001	1070.59717	-0.23825	-8.5262E-05	1.0736	0.0003842	0.83532	0.00029894	357.8733850591564	23.61	0.55933	23.61	23.381	23.94	0					15	10	2	0	0	0	0.29981	1	6549	6549		22.658	8.4399	1	9571100	+		47240	20338	34340	34612	46191	46191					0.06469994786198185
SEKIKELPQ	9	Unmodified	_SEKIKELPQ_					0	0	0			REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-SECPEP	A375_MHC_IP_R1	1	358.6016540527344	3	357.873001	1070.59717	-0.23825	-8.5262E-05	1.0736	0.0003842	0.83532	0.00029894	357.8733850591564	23.61	0.55933	23.61	23.381	23.94	0					15	10	2	0	0	0	0.53748	1	6595	6595		17.443	9.4972	1	9571100	+		47241	20338	34340	34612	46192	46192					0.06469994786198185
SEKIQILKL	9	Unmodified	_SEKIQILKL_					0	0	0		ENST00000373797.1_1_1:29314403-29319920:+|nuORF	ENST00000373797.1_1_1:29314403-29319920:+|nuORF	ENST00000373797.1_1_1:29314403-29319920:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	358.276611328125	3	357.897258	1070.66995	-0.18631	-6.6679E-05	-0.17971	-6.4319E-05	-0.36602	-0.000131	357.8971442002747	23.932	0.71189	23.932	23.635	24.347	0					27	13	4	0	0	0	0.67152	1	6744	6744		9.544	1.5986	1	14512000			47242	11240	34341	34613	46193	46193					0.1374374857962266
SEKKKKKKKKP	11	Unmodified	_SEKKKKKKKKP_					0	0	0			REV__ENST00000340726.7_1_8:72273997-72274438:-|nuORF	REV__ENST00000340726.7_1_8:72273997-72274438:-|nuORF	MSMS	A375_MHC_IP_R1	1	678.7321166992188	2	678.956104	1355.89765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.915	1	80.915	80.415	81.415	0								0	0	0	0.16334	1	29564	29564		1.3295	0	1		+		47243	23723	34342	34614	46194	46194					0.23394126507446344
SEKKQPVDLGL	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SEKKQPVDLGL_					1	0	0		ENST00000476463.1_1_7:96337506-96339075:-|nuORF;ENSG00000127922|ENST00000248566|SEM1	ENST00000476463.1_1_7:96337506-96339075:-|nuORF	ENST00000476463.1_1_7:96337506-96339075:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	628.7487182617188	2	628.34826	1254.68197	-0.63022	-0.00039599	-0.033264	-2.0902E-05	-0.66348	-0.0004169	628.348255022509	57.951	0.71039	57.951	57.669	58.379	0					37	13	4	0	0	0	0.041166	1	20773	20773		96.034	61.102	1	16361000			47244	4109	34343	34615	46195	46195					0.06481320532134305
SEKKQPVDLGL	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SEKKQPVDLGL_					1	0	0		ENST00000476463.1_1_7:96337506-96339075:-|nuORF;ENSG00000127922|ENST00000248566|SEM1	ENST00000476463.1_1_7:96337506-96339075:-|nuORF	ENST00000476463.1_1_7:96337506-96339075:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	628.7478637695312	2	628.34826	1254.68197	-1.2123	-0.00076172	0.14809	9.3052E-05	-1.0642	-0.00066867	628.3483540289944	57.192	0.61023	57.942	57.612	58.222	0.75014					35	11	4	0	0	0	0.037235	1	21589	21589		108.26	68.023	1	18288000			47245	4109	34343	34615	46196	46196					0.06481320532134305
SEKLIALFTK	10	Unmodified	_SEKLIALFTK_					0	0	0			REV__nc|ENSG00000155592|Q63HK3-2|ZKSCAN2	REV__nc|ENSG00000155592|Q63HK3-2|ZKSCAN2	MULTI-SECPEP	A375_MHC_IP_R1	1	384.2925109863281	3	383.90078	1148.68051	0.2699	0.00010362	-1.8534	-0.00071151	-1.5835	-0.00060789	384.23461336904126	50.305	0.35775	50.305	50.101	50.459	0					9	6	2	0	0	0	0.92055	1	17745	17745		12.228	9.5964	1	702780	+		47246	19929	34344	34616	46197	46197					0.1121173123403878
SEKLINLKEEY	11	Unmodified	_SEKLINLKEEY_					0	0	0			REV__nc|ENSG00000112984|O95235-2|KIF20A	REV__nc|ENSG00000112984|O95235-2|KIF20A	MULTI-SECPEP	A375_MHC_IP_R1	1	455.6067199707031	3	455.913525	1364.71875	-0.5243	-0.00023904	1.5481	0.00070582	1.0238	0.00046678	455.91388943142005	23.762	0.20293	23.762	23.635	23.838	0					5	3	2	0	0	0	0.9907	1	6568	6568		12.856	8.2522	1	938150	+		47247	17763	34345	34617	46198	46198					0.050975723580449994
SEKLLLAFR	9	Unmodified	_SEKLLLAFR_					0	0	0			REV__ENST00000422956.6_1_2:113993137-114016997:+|nuORF	REV__ENST00000422956.6_1_2:113993137-114016997:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	358.9361877441406	3	359.553603	1075.63898	-0.48402	-0.00017403	1.7447	0.00062731	1.2607	0.00045328	359.88873841687825	23.561	0.25399	24.191	24.079	24.333	0.63014					6	4	2	0	0	0	0.60917	1	7653	7653		13.615	0	1	867570	+		47248	23644	34346	34618	46199	46199					0.1041859526535518
SEKLTNRYL	9	Unmodified	_SEKLTNRYL_					0	0	0			REV__nc|ENSG00000174963|Q8N9L1-2|ZIC4	REV__nc|ENSG00000174963|Q8N9L1-2|ZIC4	MULTI-SECPEP	A375_MHC_IP_R1	1	374.6258850097656	3	375.208384	1122.60332	0.29312	0.00010998	-0.042357	-1.5893E-05	0.25076	9.4087E-05	375.20835037502235	34.583	0.45623	34.583	34.303	34.759	0					19	8	3	0	0	0	0.67483	1	11426	11426		6.6304	0	1	9145800	+		47249	27371	34347	34619	46200	46200					0.04692513017721467
SEKLYESHE	9	Unmodified	_SEKLYESHE_					0	0	0		ENSG00000214029|ENST00000537226|ZNF891	ENSG00000214029|ENST00000537226|ZNF891	ENSG00000214029|ENST00000537226|ZNF891	MULTI-SECPEP	A375_MHC_IP_R2	2	374.9084167480469	3	374.508499	1120.50367	-0.0062244	-2.3311E-06	-0.24355	-9.121E-05	-0.24977	-9.3542E-05	374.50836943232923	22.952	0.51091	23.582	23.317	23.828	0.63015					14	9	2	0	0	0	0.775	1	7337	7337		10.8	4.1691	1	4544600			47250	9600	34348	34620	46201	46201					-0.051763493868975274
SEKLYMTY	8	Unmodified	_SEKLYMTY_					0	0	0		tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1	tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1	tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	517.6923217773438	2	517.746793	1033.47903	-0.72074	-0.00037316	-0.085962	-4.4506E-05	-0.8067	-0.00041766	517.7467856901799	45.735	0.90944	46.501	46.099	47.008	0.76519					45	17	4	0	0	0	0.33238	1	17210	17210		56.177	4.5472	1	41352000			47251	30065	34349	34621	46202	46202					-0.0363670079395888
SEKPNWDY	8	Unmodified	_SEKPNWDY_					0	0	0		ENSG00000135900|ENST00000258383|MRPL44	ENSG00000135900|ENST00000258383|MRPL44	ENSG00000135900|ENST00000258383|MRPL44	MULTI-MSMS	A375_MHC_IP_R2	2	519.6664428710938	2	519.729989	1037.44543	-0.81583	-0.00042401	-0.063717	-3.3115E-05	-0.87955	-0.00045713	519.7297352423834	50.51	0.5068	51.264	51.006	51.513	0.75406					13	9	2	0	0	0	0.77702	1	18997	18997		5.7604	0.86342	1	1152900			47252	4724	34350	34622	46203	46203					-0.07179986241521874
SEKPVQTLFTP	11	Unmodified	_SEKPVQTLFTP_					0	0	0			REV__ENST00000373204.5_1_1:36387420-36387693:+|nuORF	REV__ENST00000373204.5_1_1:36387420-36387693:+|nuORF	MSMS	A375_MHC_IP_R2	2	416.6118469238281	3	416.227444	1245.6605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.302	1	57.052	56.552	57.552	0.75015								0	0	0	0.16191	1	21280	21280		8.7518	0.80638	1		+		47253	24086	34351	34623	46204	46204					0.047499355034233304
SEKQHPATW	9	Unmodified	_SEKQHPATW_					0	0	0			REV__ENST00000380443.5_1_20:2843179-2847217:+|nuORF	REV__ENST00000380443.5_1_20:2843179-2847217:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	542.4679565429688	2	542.26453	1082.51451	-0.8116	-0.0004401	-0.24532	-0.00013303	-1.0569	-0.00057313	542.2644202148768	27.918	0.75506	27.918	27.533	28.288	0					36	14	4	0	0	0	0.6656	1	8445	8445		10.074	0	1	22840000	+		47254	24216	34352	34624	46205	46205					-0.023449022219665494
SEKRKKKKKRK	11	Unmodified	_SEKRKKKKKRK_					0	0	0			REV__ENST00000565844.1_1_16:19721758-19726357:-|nuORF	REV__ENST00000565844.1_1_16:19721758-19726357:-|nuORF	MSMS	A375_MHC_IP_R1	1	722.3721313476562	2	722.483351	1442.95215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.87	1	118.87	118.37	119.37	0								0	0	0	0.16334	1	43852	43852		1.3295	1.3295	1		+		47255	17287	34353	34625	46206	46206					0.24839138378865755
SEKWVPEIRC	10	Unmodified	_SEKWVPEIRC_					0	0	0		nc|ENSG00000116574|Q7L0Q8-2|RHOU;ENSG00000116574|ENST00000366691|RHOU	nc|ENSG00000116574|Q7L0Q8-2|RHOU	nc|ENSG00000116574|Q7L0Q8-2|RHOU	MULTI-MSMS	A375_MHC_IP_R1	1	415.87591552734375	3	416.213141	1245.61759	0.39201	0.00016316	-0.50905	-0.00021187	-0.11703	-4.871E-05	416.21276830054376	20.516	0.61255	20.516	20.283	20.895	0					16	10	3	0	0	0	0.71693	1	5359	5359		4.7159	4.7159	1	1653700			47256	3406	34354	34626	46207	46207					0.004608421743341751
SEKWWHSY	8	Unmodified	_SEKWWHSY_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	A375_MHC_IP_R2	2	562.15087890625	2	561.753798	1121.49304	-0.82773	-0.00046498	-2.6637	-0.0014963	-3.4914	-0.0019613	561.7515928086701	71.42	0.86127	72.154	71.706	72.567	0.73421					33	16	4	0	0	0	0.75805	1	27086	27086		18.135	1.0221	1	1637800			47257	3821	34355	34627	46208	46208					-0.06284287250673515
SELAEAFGEPH	11	Unmodified	_SELAEAFGEPH_					0	0	0		ENST00000354485.5_1_9:676972-730286:+|nuORF;ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1	ENST00000354485.5_1_9:676972-730286:+|nuORF	ENST00000354485.5_1_9:676972-730286:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	396.10833740234375	3	396.184016	1185.53022	-0.12316	-4.8795E-05	0.29772	0.00011795	0.17456	6.9158E-05	396.5185510564636	34.553	0.50606	34.553	34.253	34.759	0					22	9	3	0	0	0	0.62292	1	11363	11363		12.856	1.3381	1	5721400			47258	2725	34356	34628	46209	46209					-0.0551266049556034
SELATWGEIYK	11	Unmodified	_SELATWGEIYK_					0	0	0			REV__nc|ENSG00000100433|P57789|KCNK10	REV__nc|ENSG00000100433|P57789|KCNK10	MSMS	A375_MHC_IP_R1	1	433.2850341796875	3	432.887199	1295.63977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.807	1	34.807	34.307	35.307	0								0	0	0	0.15902	1	11510	11510		14.838	8.6461	1		+		47259	17092	34357	34629	46210	46210					0.0037734512377483043
SELAVSLTCRQ	11	Unmodified	_SELAVSLTCRQ_					0	0	0		ENST00000517534.5_1_5:138163374-138223382:+|nuORF	ENST00000517534.5_1_5:138163374-138223382:+|nuORF	ENST00000517534.5_1_5:138163374-138223382:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	403.947265625	3	402.876417	1205.60742	-0.43561	-0.0001755	-0.87407	-0.00035214	-1.3097	-0.00052764	402.87547673014774	24.803	0.90986	24.803	24.447	25.357	0					34	17	4	0	0	0	0.7039	1	7119	7119		12.228	0	1	18314000			47260	12961	34358	34630	46211	46211					0.012842344491218682
SELDAVQPPDG	11	Unmodified	_SELDAVQPPDG_					0	0	0			REV__nc|ENSG00000134668|Q6ZMY3-2|SPOCD1	REV__nc|ENSG00000134668|Q6ZMY3-2|SPOCD1	MULTI-MSMS	A375_MHC_IP_R1	1	565.164306640625	2	564.264393	1126.51423	-0.37149	-0.00020962	1.3044	0.00073601	0.93287	0.00052639	564.2665904761581	104.62	0.76133	104.62	104.13	104.89	0					40	14	4	0	0	0	0.69231	1	38454	38454		16.149	2.2431	1	3050800	+		47261	18793	34359	34631	46212	46212					-0.043963667324760536
SELDEEKKI	9	Unmodified	_SELDEEKKI_					0	0	0		ENSG00000147010|ENST00000397821|SH3KBP1;nc|ENSG00000147010|Q96B97-2|SH3KBP1;nc|ENSG00000147010|Q96B97-3|SH3KBP1	ENSG00000147010|ENST00000397821|SH3KBP1	ENSG00000147010|ENST00000397821|SH3KBP1	MULTI-MSMS	A375_MHC_IP_R1	1	364.5921936035156	3	364.1924	1089.55537	-0.0034533	-1.2577E-06	-1.2378	-0.00045078	-1.2412	-0.00045204	364.19219179920606	24.175	0.5057	24.175	24.042	24.547	0					16	9	3	0	0	0	0.10637	1	6812	6812		49.527	3.052	1	7699900			47262	5649	34360	34632	46213	46213					0.0141739430700909
SELDLISRL	9	Unmodified	_SELDLISRL_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MULTI-MSMS	A375_MHC_IP_R1	1	523.697509765625	2	523.298039	1044.58152	-0.43976	-0.00023013	-0.61366	-0.00032113	-1.0534	-0.00055126	523.2976369983226	102.23	1.0632	102.23	101.8	102.86	0					48	20	4	0	0	0	0.0042961	1	37502	37502		136.39	29.293	1	23949000			47263	2212	34361	34633	46214	46214					0.06101708269147821
SELDLISRL	9	Unmodified	_SELDLISRL_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MULTI-MSMS	A375_MHC_IP_R2	2	523.69775390625	2	523.298039	1044.58152	-0.45066	-0.00023583	-0.52172	-0.00027302	-0.97239	-0.00050885	523.2977166923731	101.37	1.1679	102.13	101.75	102.92	0.76428					51	22	4	0	0	0	0.0098082	1	38362	38362		114.19	29.664	1	23744000			47264	2212	34361	34633	46215	46215					0.06101708269147821
SELDLTYGNRY	11	Unmodified	_SELDLTYGNRY_					0	0	0		ENST00000490651.1_1_X:153760401-153761015:-|nuORF;ENSG00000160211|ENST00000393562|G6PD;nc|ENSG00000160211|P11413-3|G6PD;nc|ENSG00000160211|P11413-2|G6PD	ENST00000490651.1_1_X:153760401-153761015:-|nuORF	ENST00000490651.1_1_X:153760401-153761015:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	666.2155151367188	2	665.817324	1329.62009	-0.49487	-0.00032949	-0.20059	-0.00013356	-0.69546	-0.00046305	665.8171809160696	62.116	0.56406	62.116	61.839	62.403	0					27	10	4	0	0	0	1.9434E-08	1	22404	22404		163.69	119.91	1	7851900			47265	6405	34362	34634	46216	46216					-0.03153030886983288
SELDLTYGNRY	11	Unmodified	_SELDLTYGNRY_					0	0	0		ENST00000490651.1_1_X:153760401-153761015:-|nuORF;ENSG00000160211|ENST00000393562|G6PD;nc|ENSG00000160211|P11413-3|G6PD;nc|ENSG00000160211|P11413-2|G6PD	ENST00000490651.1_1_X:153760401-153761015:-|nuORF	ENST00000490651.1_1_X:153760401-153761015:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	666.2169799804688	2	665.817324	1329.62009	-1.1437	-0.00076152	0.022584	1.5037E-05	-1.1212	-0.00074649	665.8173651364691	61.544	0.5533	62.289	62.02	62.573	0.74504					28	10	4	0	0	0	0.00094789	1	23313	23313		148.27	106.31	1	7346500			47266	6405	34362	34634	46217	46217					-0.03153030886983288
SELDQIQRY	9	Unmodified	_SELDQIQRY_					0	0	0		nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3;ENSG00000168014|ENST00000334126|C2CD3	nc|ENSG00000168014|Q4AC94-1|C2CD3	nc|ENSG00000168014|Q4AC94-1|C2CD3	MULTI-SECPEP	A375_MHC_IP_R1	1	576.6881103515625	2	576.288202	1150.56185	0.02787	1.6061E-05	0.28685	0.00016531	0.31472	0.00018137	576.2884748069837	49.832	0.61272	49.832	49.54	50.153	0					24	11	3	0	0	0	0.011107	1	17633	17633		134.3	48.654	1	5443100			47267	7253	34363	34635	46218	46218					-0.007406677416156526
SELDQIQRY	9	Unmodified	_SELDQIQRY_					0	0	0		nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3;ENSG00000168014|ENST00000334126|C2CD3	nc|ENSG00000168014|Q4AC94-1|C2CD3	nc|ENSG00000168014|Q4AC94-1|C2CD3	MULTI-SECPEP	A375_MHC_IP_R2	2	575.73486328125	2	576.288202	1150.56185	-0.38312	-0.00022079	0.77299	0.00044547	0.38987	0.00022468	576.2889389518745	49.263	0.864	50.02	49.383	50.247	0.75736					29	16	3	0	0	0	0.011357	1	18502	18502		125.53	52.561	1	5270600			47268	7253	34363	34635	46219	46219					-0.007406677416156526
SELEEVIQY	9	Unmodified	_SELEEVIQY_					0	0	0		ENSG00000198793|ENST00000361445|MTOR;ENST00000495435.1_1_1:11193031-11204809:-|nuORF	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MSMS	A375_MHC_IP_R1	1	555.4387817382812	2	555.271687	1108.52882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.119	1	93.119	92.619	93.619	0								0	0	0	0.14677	1	34227	34227		26.884	5.137	1				47269	9326	34364	34636	46220	46220					-0.021102945843267662
SELEEYLSYE	10	Unmodified	_SELEEYLSYE_					0	0	0		PRSS35|p.D80E|1|0.36|ENSG00000146250|chr6:83523681-83523681|T/A|missense_variant	PRSS35|p.D80E|1|0.36|ENSG00000146250|chr6:83523681-83523681|T/A|missense_variant	PRSS35|p.D80E|1|0.36|ENSG00000146250|chr6:83523681-83523681|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	631.1995849609375	2	631.277166	1260.53978	-0.63675	-0.00040197	0.42895	0.00027079	-0.2078	-0.00013118	631.2771490380132	61.622	0.71556	61.622	61.227	61.943	0					28	11	3	0	0	0	0.70651	1	22312	22312		9.3831	2.66	1	10289000			47270	15236	34365	34637	46221	46221					-0.08006937000686776
SELEKIQKF	9	Unmodified	_SELEKIQKF_					0	0	0		ENSG00000172244|ENST00000306862|C5orf34	ENSG00000172244|ENST00000306862|C5orf34	ENSG00000172244|ENST00000306862|C5orf34	MULTI-MSMS	A375_MHC_IP_R1	1	374.9449157714844	3	374.544885	1120.61282	0.38772	0.00014522	-1.0417	-0.00039016	-0.65399	-0.00024495	374.5443092690541	39.337	0.96384	39.337	38.933	39.896	0					38	18	4	0	0	0	0.021889	1	13449	13449		65.474	36.979	1	9974400			47271	7694	34366	34638	46222	46222					0.05734281303239186
SELEKIQKF	9	Unmodified	_SELEKIQKF_					0	0	0		ENSG00000172244|ENST00000306862|C5orf34	ENSG00000172244|ENST00000306862|C5orf34	ENSG00000172244|ENST00000306862|C5orf34	MULTI-MSMS	A375_MHC_IP_R2	2	374.9446716308594	3	374.544885	1120.61282	-0.042858	-1.6052E-05	-0.15763	-5.904E-05	-0.20049	-7.5092E-05	374.5447813842344	38.522	0.50899	39.297	39.047	39.556	0.77451					25	9	4	0	0	0	0.033557	2	14183	14171;14183		57.249	30.161	1	9614000			47272	7694	34366	34638	46223;46224	46224					0.05734281303239186
SELEKIQKF	9	Unmodified	_SELEKIQKF_					0	0	0		ENSG00000172244|ENST00000306862|C5orf34	ENSG00000172244|ENST00000306862|C5orf34	ENSG00000172244|ENST00000306862|C5orf34	MULTI-MSMS	A375_MHC_IP_R2	2	561.7133178710938	2	561.313689	1120.61282	-0.98912	-0.00055521	0.30193	0.00016948	-0.68719	-0.00038573	561.3138516476387	38.517	0.4054	39.291	39.047	39.453	0.77451					11	7	3	0	0	0	0.058226	1	14210	14210		61.09	31.249	1	2675500			47273	7694	34366	34638	46225	46225					0.05734281303239186
SELEKTFNL	9	Unmodified	_SELEKTFNL_					0	0	0		ENSG00000067066|ENST00000340126|SP100;SP100|p.E212Tfs*12|1|0.15|ENSG00000067066|chr2:230449607-230449608|AG/-|frameshift_variant;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L;nc|ENSG00000185404|Q9H930-3|SP140L;nc|ENSG00000185404|Q9H930-1|SP140L	ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497|SP100;nc|ENSG00000185404|Q9H930-2|SP140L	nc|ENSG00000185404|Q9H930-2|SP140L	MULTI-SECPEP	A375_MHC_IP_R1	1	541.1819458007812	2	540.782222	1079.54989	-0.37294	-0.00020168	-0.26912	-0.00014553	-0.64206	-0.00034721	540.7821767400972	69.031	0.60901	69.031	68.717	69.326	0					32	11	4	0	0	0	0.025037	1	25031	25031		100.09	24.33	1	6383200			47274	8663;14473;1426	34367	34639	46226	46226					0.013297155152031337
SELEKTFNL	9	Unmodified	_SELEKTFNL_					0	0	0		ENSG00000067066|ENST00000340126|SP100;SP100|p.E212Tfs*12|1|0.15|ENSG00000067066|chr2:230449607-230449608|AG/-|frameshift_variant;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L;nc|ENSG00000185404|Q9H930-3|SP140L;nc|ENSG00000185404|Q9H930-1|SP140L	ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497|SP100;nc|ENSG00000185404|Q9H930-2|SP140L	nc|ENSG00000185404|Q9H930-2|SP140L	MULTI-SECPEP	A375_MHC_IP_R2	2	541.1818237304688	2	540.782222	1079.54989	-0.73562	-0.00039781	1.1512	0.00062255	0.41558	0.00022474	540.7833248320067	68.228	1.4216	68.963	68.255	69.677	0.73511					36	27	2	0	0	0	0.028087	1	25831	25831		106.94	41.705	1	6813500			47275	8663;14473;1426	34367	34639	46227	46227					0.013297155152031337
SELEYDMKKY	10	Oxidation (M)	_SELEYDM(Oxidation (M))KKY_		SELEYDM(1)KKY		SELEYDM(61)KKY	0	0	1		ENST00000525964.6_1_11:134022841-134052943:-|nuORF;ENSG00000151503|ENST00000534548|NCAPD3	ENST00000525964.6_1_11:134022841-134052943:-|nuORF	ENST00000525964.6_1_11:134022841-134052943:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	441.6040344238281	3	441.204199	1320.59077	-0.42455	-0.00018731	0.29534	0.0001303	-0.12921	-5.7009E-05	441.20428987126763	26.404	0.50661	26.404	26.221	26.728	0					27	9	4	0	0	0	0.11281	1	7865	7865		60.899	44.625	1	20253000			47276	5913	34368	34640	46228	46228		315			-0.05670311227504499
SELEYDMKKY	10	Oxidation (M)	_SELEYDM(Oxidation (M))KKY_		SELEYDM(1)KKY		SELEYDM(100)KKY	0	0	1		ENST00000525964.6_1_11:134022841-134052943:-|nuORF;ENSG00000151503|ENST00000534548|NCAPD3	ENST00000525964.6_1_11:134022841-134052943:-|nuORF	ENST00000525964.6_1_11:134022841-134052943:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	662.2037963867188	2	661.302661	1320.59077	-0.84409	-0.0005582	0.1127	7.4531E-05	-0.73138	-0.00048367	661.3026470823537	26.431	0.3544	26.431	26.271	26.626	0					19	6	4	0	0	0	0.0040472	1	7878	7878		100.09	100.09	1	7862500			47277	5913	34368	34640	46229	46229		315			-0.05670311227504499
SELEYDMKKY	10	Oxidation (M)	_SELEYDM(Oxidation (M))KKY_		SELEYDM(1)KKY		SELEYDM(150)KKY	0	0	1		ENST00000525964.6_1_11:134022841-134052943:-|nuORF;ENSG00000151503|ENST00000534548|NCAPD3	ENST00000525964.6_1_11:134022841-134052943:-|nuORF	ENST00000525964.6_1_11:134022841-134052943:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	661.7022705078125	2	661.302661	1320.59077	-1.3248	-0.0008761	0.21173	0.00014002	-1.1131	-0.00073609	661.3028385176829	25.916	0.40696	26.576	26.347	26.754	0.65992					16	7	3	0	0	0	0.00046767	1	8705	8705		150.62	114.11	1	7470800			47278	5913	34368	34640	46230	46230		315			-0.05670311227504499
SELEYDMKKY	10	Oxidation (M)	_SELEYDM(Oxidation (M))KKY_		SELEYDM(1)KKY		SELEYDM(53)KKY	0	0	1		ENST00000525964.6_1_11:134022841-134052943:-|nuORF;ENSG00000151503|ENST00000534548|NCAPD3	ENST00000525964.6_1_11:134022841-134052943:-|nuORF	ENST00000525964.6_1_11:134022841-134052943:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	441.6040954589844	3	441.204199	1320.59077	-0.78203	-0.00034504	0.22513	9.9327E-05	-0.55691	-0.00024571	441.20429535132973	25.905	0.61184	26.565	26.245	26.857	0.65992					31	11	4	0	0	0	0.46518	1	8682	8682		53.47	39.299	1	15370000			47279	5913	34368	34640	46231	46231		315			-0.05670311227504499
SELEYDMKKY	10	Unmodified	_SELEYDMKKY_					0	0	0		ENST00000525964.6_1_11:134022841-134052943:-|nuORF;ENSG00000151503|ENST00000534548|NCAPD3	ENST00000525964.6_1_11:134022841-134052943:-|nuORF	ENST00000525964.6_1_11:134022841-134052943:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	653.7050170898438	2	653.305203	1304.59585	-0.5723	-0.00037389	0.35034	0.00022888	-0.22196	-0.00014501	653.3054004509034	38.474	0.46088	38.474	38.218	38.679	0					20	8	3	0	0	0	2.9687E-05	1	13042	13042		162.31	120.47	1	9476300			47280	5913	34368	34641	46232	46232					-0.0442600736487293
SELEYDMKKY	10	Unmodified	_SELEYDMKKY_					0	0	0		ENST00000525964.6_1_11:134022841-134052943:-|nuORF;ENSG00000151503|ENST00000534548|NCAPD3	ENST00000525964.6_1_11:134022841-134052943:-|nuORF	ENST00000525964.6_1_11:134022841-134052943:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	436.2725524902344	3	435.872561	1304.59585	-0.3269	-0.00014249	0.52615	0.00022933	0.19925	8.6848E-05	435.87275340200927	38.447	0.51083	38.447	38.168	38.679	0					29	9	5	0	0	0	0.074273	1	13034	13034		78.61	56.502	1	16027000			47281	5913	34368	34641	46233	46233					-0.0442600736487293
SELEYDMKKY	10	Unmodified	_SELEYDMKKY_					0	0	0		ENST00000525964.6_1_11:134022841-134052943:-|nuORF;ENSG00000151503|ENST00000534548|NCAPD3	ENST00000525964.6_1_11:134022841-134052943:-|nuORF	ENST00000525964.6_1_11:134022841-134052943:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	436.6064758300781	3	435.872561	1304.59585	-0.45799	-0.00019963	-0.019169	-8.3553E-06	-0.47716	-0.00020798	435.8725467462599	37.78	0.56448	38.554	38.279	38.843	0.77451					30	10	4	0	0	0	0.0090409	1	13819	13819		72.59	54.25	1	18993000			47282	5913	34368	34641	46234	46234					-0.0442600736487293
SELEYDMKKY	10	Unmodified	_SELEYDMKKY_					0	0	0		ENST00000525964.6_1_11:134022841-134052943:-|nuORF;ENSG00000151503|ENST00000534548|NCAPD3	ENST00000525964.6_1_11:134022841-134052943:-|nuORF	ENST00000525964.6_1_11:134022841-134052943:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	653.7049560546875	2	653.305203	1304.59585	-0.98255	-0.00064191	-0.020042	-1.3094E-05	-1.0026	-0.000655	653.3052442535965	37.785	0.4605	38.559	38.279	38.739	0.77451					22	8	4	0	0	0	6.1736E-07	1	13835	13835		200.32	156.55	1	14508000			47283	5913	34368	34641	46235	46235					-0.0442600736487293
SELFFAKKVI	10	Unmodified	_SELFFAKKVI_					0	0	0		tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1	tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1	tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1	MSMS	A375_MHC_IP_R2	2	591.4610595703125	2	591.350074	1180.6856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.681	1	94.426	93.926	94.926	0.74474								0	0	0	0.15465	1	35611	35611		5.7319	0.43497	1				47284	29916	34369	34642	46236	46236					0.1024803509665162
SELFHEDLL	9	Unmodified	_SELFHEDLL_					0	0	0		RP1|p.P1829L|1|0.14|ENSG00000104237|chr8:54629368-54629368|C/T|missense_variant	RP1|p.P1829L|1|0.14|ENSG00000104237|chr8:54629368-54629368|C/T|missense_variant	RP1|p.P1829L|1|0.14|ENSG00000104237|chr8:54629368-54629368|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	551.1337890625	2	551.774396	1101.53424	-0.49254	-0.00027177	0.68325	0.000377	0.19071	0.00010523	552.2751876297967	102.21	0.30465	102.21	101.95	102.25	0					7	5	2	0	0	0	0.71541	1	37573	37573		7.2892	0	1	941230			47285	29091	34370	34643	46237	46237					-0.012465710018659593
SELFPQCQL	9	Unmodified	_SELFPQCQL_					0	0	0			REV__ENST00000519853.5_3_8:41455866-41456797:+|nuORF	REV__ENST00000519853.5_3_8:41455866-41456797:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	533.1570434570312	2	532.757692	1063.50083	-0.53744	-0.00028633	0.016542	8.8127E-06	-0.5209	-0.00027751	532.7574971124125	85.833	0.66029	86.569	86.239	86.899	0.73601					19	12	2	0	0	0	0.50702	1	32648	32648		25.399	0	1	4120800	+		47286	25690	34371	34644	46238	46238					-0.028378960454119806
SELGHPFGY	9	Unmodified	_SELGHPFGY_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6;ENST00000504674.1_1_5:39719945-39720791:-|nuORF	nc|ENSG00000102786|Q9UL03-3|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	MULTI-MSMS	A375_MHC_IP_R1	1	504.1997985839844	2	503.735074	1005.4556	-0.38669	-0.00019479	0.060388	3.042E-05	-0.32631	-0.00016437	503.7350931076872	60.602	0.6611	60.602	60.363	61.024	0					22	12	3	0	0	0	0.1478	1	21758	21758		42.095	25.945	1	3111400			47287	2393	34372	34645	46239	46239					-0.04691378516281475
SELGHPFGY	9	Unmodified	_SELGHPFGY_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6;ENST00000504674.1_1_5:39719945-39720791:-|nuORF	nc|ENSG00000102786|Q9UL03-3|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1346130371094	2	503.735074	1005.4556	-1.0254	-0.00051655	0.30906	0.00015568	-0.71638	-0.00036087	503.73517755896864	59.815	0.65703	60.563	60.249	60.906	0.74714					24	12	3	0	0	0	0.089948	1	22639	22639		70.716	45.316	1	2874300			47288	2393	34372	34645	46240	46240					-0.04691378516281475
SELGHVGSY	9	Unmodified	_SELGHVGSY_					0	0	0		ENSG00000103023|ENST00000567164|PRSS54	ENSG00000103023|ENST00000567164|PRSS54	ENSG00000103023|ENST00000567164|PRSS54	MULTI-MSMS	A375_MHC_IP_R1	1	475.1241149902344	2	474.724707	947.43486	-0.46078	-0.00021874	0.1997	9.4804E-05	-0.26108	-0.00012394	474.72474613899743	34.835	0.61034	34.835	34.608	35.218	0					19	11	2	0	0	0	0.098973	1	11518	11518		50.855	6.448	1	22010000			47289	2411	34373	34646	46241	46241					-0.040959688959446794
SELGHVGSY	9	Unmodified	_SELGHVGSY_					0	0	0		ENSG00000103023|ENST00000567164|PRSS54	ENSG00000103023|ENST00000567164|PRSS54	ENSG00000103023|ENST00000567164|PRSS54	MULTI-MSMS	A375_MHC_IP_R2	2	474.63238525390625	2	474.724707	947.43486	-0.90475	-0.00042951	0.24607	0.00011681	-0.65869	-0.0003127	474.72464211585924	34.127	0.61061	34.879	34.651	35.262	0.75225					23	11	3	0	0	0	0.098973	1	12348	12348		50.855	14.811	1	21425000			47290	2411	34373	34646	46242	46242					-0.040959688959446794
SELGIRVGF	9	Unmodified	_SELGIRVGF_					0	0	0		ENST00000381401.10_1_X:1511360-1511447:-|nuORF	ENST00000381401.10_1_X:1511360-1511447:-|nuORF	ENST00000381401.10_1_X:1511360-1511447:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	489.6736755371094	2	489.274367	976.53418	-0.14113	-6.905E-05	-0.87124	-0.00042628	-1.0124	-0.00049533	489.2738001838986	82.506	0.91104	82.506	82.113	83.024	0					37	17	3	0	0	0	0.37663	1	30251	30251		43.772	26.83	1	4610400			47291	11372	34374	34647	46243	46243					0.044974737888196614
SELGRRLHKL	10	Unmodified	_SELGRRLHKL_					0	0	0		ENSG00000158560|ENST00000447467|DYNC1I1;nc|ENSG00000158560|O14576|DYNC1I1	ENSG00000158560|ENST00000447467|DYNC1I1	ENSG00000158560|ENST00000447467|DYNC1I1	MULTI-SECPEP	A375_MHC_IP_R1	1	604.7487182617188	2	604.864746	1207.71494	-0.57623	-0.00034854	-0.4715	-0.00028519	-1.0477	-0.00063374	604.8644295734526	131.39	0.4028	131.39	131.07	131.48	0					9	7	2	0	0	0	0.94727	1	50547	50547		1.0715	0	1	2115100			47292	6315	34375	34648	46244	46244					0.11938992165505624
SELGSETRY	9	Unmodified	_SELGSETRY_					0	0	0		ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-7|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1	ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-8|YY1AP1	ENST00000442834.6_1_1:155629450-155640310:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	521.6454467773438	2	521.246003	1040.47745	-0.62168	-0.00032405	-0.25992	-0.00013548	-0.8816	-0.00045953	521.245830771401	27.204	0.55623	27.204	27.027	27.584	0					27	10	3	0	0	0	0.016541	1	8198	8198		96.936	22.007	1	27680000			47293	11999;14719	34376	34649	46245	46245					-0.04116618558373375
SELGSETRY	9	Unmodified	_SELGSETRY_					0	0	0		ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-7|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1	ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-8|YY1AP1	ENST00000442834.6_1_1:155629450-155640310:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	521.6453857421875	2	521.246003	1040.47745	-0.95875	-0.00049974	-0.13743	-7.1636E-05	-1.0962	-0.00057138	521.24588716399	26.627	0.66426	27.287	27.109	27.773	0.65992					29	12	3	0	0	0	0.016541	1	9002	9002		96.936	22.007	1	22587000			47294	11999;14719	34376	34649	46246	46246					-0.04116618558373375
SELHSFWFG	9	Unmodified	_SELHSFWFG_					0	0	0			REV__ENST00000380834.6_1_2:25044103-25044397:+|nuORF	REV__ENST00000380834.6_1_2:25044103-25044397:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	555.682373046875	2	555.256174	1108.49779	-0.91908	-0.00051032	0.8038	0.00044631	-0.11528	-6.401E-05	555.7578544370706	33.055	0.7634	33.805	33.38	34.143	0.75015					24	14	3	0	0	0	0.75466	1	11955	11955		7.9102	0	1	1365100	+		47295	24225	34377	34650	46247	46247					-0.052114031079327106
SELINQIAKY	10	Unmodified	_SELINQIAKY_					0	0	0		tr|U7SLI9|U7SLI9_FUSNUPolysaccharidebiosynthesisproteinCapD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01946PE=3SV=1	tr|U7SLI9|U7SLI9_FUSNUPolysaccharidebiosynthesisproteinCapD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01946PE=3SV=1	tr|U7SLI9|U7SLI9_FUSNUPolysaccharidebiosynthesisproteinCapD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01946PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	589.6777954101562	2	589.824421	1177.63429	-0.21321	-0.00012575	-0.001168	-6.8889E-07	-0.21437	-0.00012644	589.8243654765654	28.615	0.45544	28.615	28.39	28.845	0					29	8	5	0	0	0	0.70329	1	8759	8759		10.824	0.75	1	50952000			47296	29503	34378	34651	46248	46248					0.052576663319541694
SELIQGLGY	9	Unmodified	_SELIQGLGY_					0	0	0		ENSG00000135048|ENST00000377044|CEMIP2;nc|ENSG00000135048|Q9UHN6-2|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	490.6489562988281	2	490.258382	978.502212	-0.49799	-0.00024414	0.34089	0.00016712	-0.1571	-7.7021E-05	490.2583722327163	95.978	0.50803	96.728	96.5	97.008	0.75045					16	9	3	0	0	0	0.67483	1	36484	36484		14.838	6.245	1	878110			47297	4638	34379	34652	46249	46249					0.012100613150096251
SELIQGLGY	9	Unmodified	_SELIQGLGY_					0	0	0		ENSG00000135048|ENST00000377044|CEMIP2;nc|ENSG00000135048|Q9UHN6-2|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	979.1298217773438	1	979.509488	978.502212	0.039944	3.9125E-05	1.344	0.0013165	1.384	0.0013556	979.5104883550897	96.028	0.55905	96.778	96.5	97.059	0.75044					14	10	2	0	0	0	0.061442	1	36453	36453		82.529	23.85	1	1556400			47298	4638	34379	34652	46250	46250					0.012100613150096251
SELIQGLGY	9	Unmodified	_SELIQGLGY_					0	0	0		ENSG00000135048|ENST00000377044|CEMIP2;nc|ENSG00000135048|Q9UHN6-2|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	ENSG00000135048|ENST00000377044|CEMIP2	MULTI-MATCH	A375_MHC_IP_R1	1		1	979.509488	978.502212	0.21552	0.0002111	0.21733	0.00021288	0.43285	0.00042398	979.5091691910917	96.604	0.35438	96.604	96.427	96.781	0	-0.086965	-0.00053525	NaN	82.529	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2013700			47299	4638	34379	34652							0.012100613150096251
SELITPHAI	9	Unmodified	_SELITPHAI_					0	0	0		nc|ENSG00000108001|Q9H4W6-2|EBF3;nc|ENSG00000108001|Q9H4W6|EBF3;ENSG00000108001|ENST00000440978|EBF3;ENSG00000221818|ENST00000520164|EBF2;nc|ENSG00000221818|Q9HAK2-2|EBF2;ENST00000609967.5_1_20:2674291-2732741:+|nuORF;ENSG00000088881|ENST00000609451|EBF4;ENST00000519890.5_1_5:158126121-158500600:-|nuORF;ENST00000519739.5_1_5:158126121-158523319:-|nuORF;ENST00000522192.5_1_5:158126121-158523561:-|nuORF;nc|ENSG00000164330|Q9UH73-2|EBF1;ENST00000518836.5_1_5:158126121-158526593:-|nuORF;ENSG00000164330|ENST00000313708|EBF1;nc|ENSG00000088881|Q9BQW3-1|EBF4	nc|ENSG00000108001|Q9H4W6-2|EBF3;ENST00000519890.5_1_5:158126121-158500600:-|nuORF;nc|ENSG00000088881|Q9BQW3-1|EBF4	ENST00000519890.5_1_5:158126121-158500600:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	491.1742248535156	2	490.7742	979.533846	-0.36841	-0.00018081	0.49674	0.00024379	0.12833	6.298E-05	490.7744179361998	58.353	0.60975	58.353	58.126	58.736	0					32	11	4	0	0	0	0.043556	1	20953	20953		77.984	35.89	1	5807100			47300	2776;6827;14494	34380	34653	46251	46251					0.04326054068940266
SELITPHAI	9	Unmodified	_SELITPHAI_					0	0	0		nc|ENSG00000108001|Q9H4W6-2|EBF3;nc|ENSG00000108001|Q9H4W6|EBF3;ENSG00000108001|ENST00000440978|EBF3;ENSG00000221818|ENST00000520164|EBF2;nc|ENSG00000221818|Q9HAK2-2|EBF2;ENST00000609967.5_1_20:2674291-2732741:+|nuORF;ENSG00000088881|ENST00000609451|EBF4;ENST00000519890.5_1_5:158126121-158500600:-|nuORF;ENST00000519739.5_1_5:158126121-158523319:-|nuORF;ENST00000522192.5_1_5:158126121-158523561:-|nuORF;nc|ENSG00000164330|Q9UH73-2|EBF1;ENST00000518836.5_1_5:158126121-158526593:-|nuORF;ENSG00000164330|ENST00000313708|EBF1;nc|ENSG00000088881|Q9BQW3-1|EBF4	nc|ENSG00000108001|Q9H4W6-2|EBF3;ENST00000519890.5_1_5:158126121-158500600:-|nuORF;nc|ENSG00000088881|Q9BQW3-1|EBF4	ENST00000519890.5_1_5:158126121-158500600:-|nuORF	MSMS	A375_MHC_IP_R2	2	490.62493896484375	2	490.7742	979.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.28	1	58.029	57.529	58.529	0.74894								0	0	0	0.12568	1	21657	21657		34.102	12.356	1				47301	2776;6827;14494	34380	34653	46252	46252					0.04326054068940266
SELKAQLRE	9	Unmodified	_SELKAQLRE_					0	0	0		ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENST00000444127.1_1_1:68708159-68708657:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	538.2019653320312	2	537.301113	1072.58767	-1.2612	-0.00067765	0.083232	4.4721E-05	-1.178	-0.00063293	537.3011124841942	52.216	0.91241	52.969	52.677	53.59	0.75225					38	17	3	0	0	0	0.66474	1	19775	19775		10.074	0	1	14200000			47302	12011	34381	34654	46253	46253					0.05428226500657729
SELKDFFQSY	10	Unmodified	_SELKDFFQSY_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MULTI-MSMS	A375_MHC_IP_R1	1	633.1997680664062	2	632.298236	1262.58192	-0.66827	-0.00042255	0.19159	0.00012114	-0.47668	-0.0003014	632.2983025083138	93.972	0.81006	93.972	93.584	94.394	0					51	15	4	0	0	0	0.017482	1	34469	34469		87.258	47.019	1	31061000			47303	5591	34382	34655	46254	46254					-0.03886916801661755
SELKDFFQSY	10	Unmodified	_SELKDFFQSY_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MULTI-SECPEP	A375_MHC_IP_R2	2	632.6978149414062	2	632.298236	1262.58192	-0.69048	-0.00043659	0.59858	0.00037848	-0.091899	-5.8107E-05	632.2985601324834	93.34	0.76138	94.079	93.696	94.458	0.73902					52	14	5	0	0	0	0.022742	1	35414	35414		117.84	62.335	1	37081000			47304	5591	34382	34655	46255	46255					-0.03886916801661755
SELKFNEYW	9	Unmodified	_SELKFNEYW_					0	0	0		ENSG00000189171|ENST00000476133|S100A13	ENSG00000189171|ENST00000476133|S100A13	ENSG00000189171|ENST00000476133|S100A13	MULTI-SECPEP	A375_MHC_IP_R1	1	608.6859130859375	2	608.287671	1214.56079	-0.23843	-0.00014503	-1.1064	-0.00067302	-1.3448	-0.00081805	608.2865110591661	88.434	2.4926	88.434	86.983	89.476	0					81	48	4	0	0	0	0.49205	1	32635	32635		27.629	13.223	1	36640000			47305	8967	34383	34656	46256	46256					-0.037908821105247625
SELKLNKKY	9	Unmodified	_SELKLNKKY_					0	0	0			REV__ENSG00000119965|ENST00000481909|C10orf88	REV__ENSG00000119965|ENST00000481909|C10orf88	MSMS	A375_MHC_IP_R2	2	374.9084167480469	3	374.888763	1121.64446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.982	1	23.613	23.113	24.113	0.63014								0	0	0	0.15486	1	7337	7337		4.5289	0	1		+		47306	18107	34384	34657	46257	46257					0.08850274057181196
SELKSGRLEW	10	Unmodified	_SELKSGRLEW_					0	0	0		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-MSMS	A375_MHC_IP_R1	1	402.61566162109375	3	402.215539	1203.62479	-0.15501	-6.2348E-05	0.36635	0.00014735	0.21134	8.5003E-05	402.21564868660096	43.146	0.66118	43.146	42.891	43.553	0					27	12	3	0	0	0	0.12083	1	14990	14990		59.177	30.996	1	5845000			47307	1196	34385	34658	46258	46258					0.031118980464270862
SELKSGRLEW	10	Unmodified	_SELKSGRLEW_					0	0	0		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-SECPEP	A375_MHC_IP_R1	1	603.2197265625	2	602.81967	1203.62479	-0.14828	-8.9388E-05	0.87364	0.00052664	0.72535	0.00043726	603.3218206617604	43.171	0.40845	43.171	42.942	43.351	0					10	7	2	0	0	0	0.5901	1	14993	14993		44.392	44.392	1	2247700			47308	1196	34385	34658	46259	46259					0.031118980464270862
SELKSGRLEW	10	Unmodified	_SELKSGRLEW_					0	0	0		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-MSMS	A375_MHC_IP_R2	2	402.6153869628906	3	402.215539	1203.62479	0.0588	2.365E-05	-0.65218	-0.00026232	-0.59338	-0.00023867	402.2152637983401	42.289	0.76525	43.062	42.707	43.472	0.7724					34	14	4	0	0	0	0.12083	1	15722	15722		59.177	21.926	1	8015400			47309	1196	34385	34658	46260	46260					0.031118980464270862
SELKSGRLEW	10	Unmodified	_SELKSGRLEW_					0	0	0		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-MATCH	A375_MHC_IP_R2	2		2	602.81967	1203.62479	-0.40763	-0.00024573	-0.15224	-9.1772E-05	-0.55987	-0.0003375	602.8195957778015	42.288	0.35783	43.061	42.86	43.218	0.7724	-0.055191	-0.00093298	NaN	44.392	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1378700			47310	1196	34385	34658							0.031118980464270862
SELKSLPSEV	10	Unmodified	_SELKSLPSEV_					0	0	0		nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE;CENPE|p.D1988Mfs*4|1|0.29|ENSG00000138778|chr4:103140032-103140032|T/-|frameshift_variant	nc|ENSG00000138778|Q02224-3|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	MULTI-SECPEP	A375_MHC_IP_R1	1	544.0822143554688	2	544.795329	1087.5761	-0.49118	-0.0002676	1.3879	0.00075611	0.8967	0.00048852	544.795863855068	34.974	0.3573	34.974	34.861	35.218	0					10	6	2	0	0	0	0.92351	1	11664	11664		6.1918	2.5954	1	2699400			47311	5032	34386	34659	46261	46261					0.03581984686684336
SELKTFPNPPI	11	Unmodified	_SELKTFPNPPI_					0	0	0		DNAH11|p.A3207T|1|0.35|ENSG00000105877|chr7:21786645-21786645|G/A|missense_variant	DNAH11|p.A3207T|1|0.35|ENSG00000105877|chr7:21786645-21786645|G/A|missense_variant	DNAH11|p.A3207T|1|0.35|ENSG00000105877|chr7:21786645-21786645|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	414.9348449707031	3	414.895806	1241.66559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.073	1	31.073	30.573	31.573	0								0	0	0	0.16187	1	9929	9929		4.8923	0.1764	1				47312	759	34387	34660	46262	46262					0.05442239366038848
SELKTGPAV	9	Unmodified	_SELKTGPAV_					0	0	0			REV__nc|ENSG00000175920|Q18PE1-4|DOK7	REV__nc|ENSG00000175920|Q18PE1-4|DOK7	MULTI-SECPEP	A375_MHC_IP_R1	1	451.6530456542969	2	451.2531	900.491647	-0.2634	-0.00011886	-0.079204	-3.5741E-05	-0.3426	-0.0001546	451.2530204149346	31.221	0.70809	31.221	30.806	31.514	0					20	13	2	0	0	0	0.28475	1	9997	9997		48.346	15.56	1	4938500	+		47313	21374	34388	34661	46263	46263					0.037420786605594
SELKTGPAV	9	Unmodified	_SELKTGPAV_					0	0	0			REV__nc|ENSG00000175920|Q18PE1-4|DOK7	REV__nc|ENSG00000175920|Q18PE1-4|DOK7	MULTI-MSMS	A375_MHC_IP_R2	2	451.652587890625	2	451.2531	900.491647	-0.30078	-0.00013573	-0.1753	-7.9103E-05	-0.47608	-0.00021483	451.2529121498121	30.472	0.96107	31.191	30.708	31.669	0.71857					24	18	2	0	0	0	0.091096	2	10701	10653;10701		52.268	6.2474	1	3968500	+		47314	21374	34388	34661	46264;46265	46265					0.037420786605594
SELKTGPAV	9	Unmodified	_SELKTGPAV_					0	0	0			REV__nc|ENSG00000175920|Q18PE1-4|DOK7	REV__nc|ENSG00000175920|Q18PE1-4|DOK7	MULTI-SECPEP	A375_MHC_IP_R2	2	451.6894836425781	2	451.2531	900.491647	-0.30078	-0.00013573	-0.1753	-7.9103E-05	-0.47608	-0.00021483	451.2529121498121	30.472	0.96107	31.191	30.708	31.669	0.71857					24	18	2	0	0	0	0.28475	1	10653	10653		48.346	4.4876	1	3968500	+		47315	21374	34388	34661	46266	46266					0.037420786605594
SELLKEASEPP	11	Unmodified	_SELLKEASEPP_					0	0	0			REV__ENSG00000146112|ENST00000274853|PPP1R18	REV__ENSG00000146112|ENST00000274853|PPP1R18	MULTI-SECPEP	A375_MHC_IP_R2	2	401.1449279785156	3	400.543321	1198.60813	-0.099619	-3.9902E-05	0.97113	0.00038898	0.87151	0.00034908	400.54368841797447	39.414	0.2529	40.189	40.067	40.32	0.77451					8	4	2	0	0	0	0.99089	1	14567	14567		13.535	13.535	1	2152300	+		47316	19517	34389	34662	46267	46267					0.016773523698020654
SELLLAKNI	9	Unmodified	_SELLLAKNI_					0	0	0		nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	nc|ENSG00000151693|O43150-2|ASAP2	nc|ENSG00000151693|O43150-2|ASAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	501.20501708984375	2	500.8055	999.596446	-0.27688	-0.00013866	-0.5893	-0.00029512	-0.86618	-0.00043379	500.805417932924	70.434	0.87051	70.434	70.135	71.005	0					26	16	2	0	0	0	0.24324	1	25574	25574		53.833	13.883	1	1907400			47317	5921	34390	34663	46268	46268					0.09663200137117656
SELLLRGEL	9	Unmodified	_SELLLRGEL_					0	0	0			REV__ENSG00000063438|ENST00000684583|AHRR	REV__ENSG00000063438|ENST00000684583|AHRR	MULTI-SECPEP	A375_MHC_IP_R1	1	515.4300537109375	2	515.300581	1028.58661	-0.71816	-0.00037007	0.63999	0.00032979	-0.078164	-4.0278E-05	515.3013850738846	84.316	0.55663	84.316	84.141	84.697	0					14	10	2	0	0	0	0.16676	1	30876	30876		58.679	8.7458	1	1668200	+		47318	16468	34391	34664	46269	46269					0.07346012131756652
SELLNTAL	8	Unmodified	_SELLNTAL_					0	0	0			REV__ENST00000265748.6_2_7:36492150-36492231:+|nuORF	REV__ENST00000265748.6_2_7:36492150-36492231:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	431.1395263671875	2	430.739825	859.465098	0.32536	0.00014015	-0.058781	-2.5319E-05	0.26658	0.00011483	430.7395346930663	48.938	0.91245	48.938	48.577	49.49	0					28	17	2	0	0	0	0.92636	1	17329	17329		23.148	0	1	1618900	+		47319	23255	34392	34665	46270	46270					0.02974389769224217
SELLNTAL	8	Unmodified	_SELLNTAL_					0	0	0			REV__ENST00000265748.6_2_7:36492150-36492231:+|nuORF	REV__ENST00000265748.6_2_7:36492150-36492231:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	430.739825	859.465098	-0.13718	-5.909E-05	0.13504	5.8169E-05	-0.0021369	-9.2043E-07	430.7395996370239	48.096	0.70378	48.858	48.48	49.184	0.76128	-0.040071	0.0001028	NaN	23.148	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1409800	+		47320	23255	34392	34665							0.02974389769224217
SELLPATQPTA	11	Unmodified	_SELLPATQPTA_					0	0	0		ENSG00000136630|ENST00000366903|HLX	ENSG00000136630|ENST00000366903|HLX	ENSG00000136630|ENST00000366903|HLX	MULTI-SECPEP	A375_MHC_IP_R1	1	564.6826782226562	2	564.300778	1126.587	-0.31293	-0.00017659	1.6092	0.00090806	1.2962	0.00073147	564.3013420037058	56.113	0.60671	56.113	55.841	56.447	0					28	11	4	0	0	0	0.95991	1	20203	20203		18.146	5.9057	1	4436400			47321	4802	34393	34666	46271	46271					0.02877387060948422
SELLRILAY	9	Unmodified	_SELLRILAY_					0	0	0			REV__ENSG00000010292|ENST00000315579|NCAPD2	REV__ENSG00000010292|ENST00000315579|NCAPD2	MULTI-SECPEP	A375_MHC_IP_R1	1	539.1720581054688	2	539.318774	1076.623	-0.26907	-0.00014511	-1.4324	-0.00077251	-1.7015	-0.00091763	539.3184922235313	44.571	0.51064	44.571	44.216	44.727	0					14	9	2	0	0	0	0.73363	1	15514	15514		6.7232	0.99131	1	1697700	+		47322	16192	34394	34667	46272	46272					0.08774889028472899
SELLSDVRF	9	Unmodified	_SELLSDVRF_					0	0	0		nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000064726|ENST00000261721|BTBD1	nc|ENSG00000064726|Q9H0C5-2|BTBD1	nc|ENSG00000064726|Q9H0C5-2|BTBD1	MULTI-MSMS	A375_MHC_IP_R1	1	533.695556640625	2	533.282389	1064.55022	-0.81014	-0.00043203	0.0012465	6.6473E-07	-0.80889	-0.00043137	533.2823427784633	86.8	0.70717	86.8	86.376	87.083	0					38	13	4	0	0	0	0.39434	1	31922	31922		24.991	8.8419	1	21654000			47323	1358	34395	34668	46273	46273					0.020531352350417365
SELLSDVRF	9	Unmodified	_SELLSDVRF_					0	0	0		nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000064726|ENST00000261721|BTBD1	nc|ENSG00000064726|Q9H0C5-2|BTBD1	nc|ENSG00000064726|Q9H0C5-2|BTBD1	MULTI-SECPEP	A375_MHC_IP_R2	2	533.1570434570312	2	533.282389	1064.55022	-0.56622	-0.00030195	-0.21586	-0.00011512	-0.78208	-0.00041707	533.2822644754062	85.886	0.71165	86.619	86.287	86.998	0.73301					36	13	4	0	0	0	0.011308	1	32648	32648		96.936	23.968	1	21515000			47324	1358	34395	34668	46274	46274					0.020531352350417365
SELLSHSPGW	10	Unmodified	_SELLSHSPGW_					0	0	0			REV__ENST00000552189.5_1_12:48437042-48437348:-|nuORF	REV__ENST00000552189.5_1_12:48437042-48437348:-|nuORF	MSMS	A375_MHC_IP_R2	2	556.8090209960938	2	556.772188	1111.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.562	1	51.317	50.817	51.817	0.75406								0	0	0	0.15332	1	19015	19015		10.074	0	1		+		47325	26050	34396	34669	46275	46275					-0.02148035424761474
SELNKDILY	9	Unmodified	_SELNKDILY_					0	0	0			REV__ENSG00000061676|ENST00000361354|NCKAP1	REV__ENSG00000061676|ENST00000361354|NCKAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	548.1897583007812	2	547.790047	1093.56554	-0.35148	-0.00019254	-0.43009	-0.0002356	-0.78157	-0.00042814	547.7897561913559	71.541	0.85996	71.541	71.057	71.917	0					26	16	2	0	0	0	0.34746	1	25960	25960		45.7	9.5726	1	14969000	+		47326	16450	34397	34670	46276	46276					0.022500020322468117
SELNKRVTTI	10	Unmodified	_SELNKRVTTI_					0	0	0			REV__nc|ENSG00000198836|O60313-13|OPA1	REV__nc|ENSG00000198836|O60313-13|OPA1	MULTI-SECPEP	A375_MHC_IP_R1	1	580.9125366210938	2	580.83532	1159.65609	-0.19791	-0.00011495	4.4667	0.0025944	4.2688	0.0024795	580.8390749096706	83.3	0.25557	83.3	83.125	83.38	0					6	4	2	0	0	0	0.91556	1	30447	30447		6.2058	0	1	739060	+		47327	22426	34398	34671	46277	46277					0.08264471080519797
SELNPNAEVW	10	Unmodified	_SELNPNAEVW_					0	0	0		LARP4B|p.N447Mfs*45|1|0.17|ENSG00000107929|chr10:825211-825211|A/-|frameshift_variant;ENSG00000107929|ENST00000316157|LARP4B	LARP4B|p.N447Mfs*45|1|0.17|ENSG00000107929|chr10:825211-825211|A/-|frameshift_variant	LARP4B|p.N447Mfs*45|1|0.17|ENSG00000107929|chr10:825211-825211|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	580.1749877929688	2	579.774928	1157.5353	-0.24823	-0.00014392	-0.97127	-0.00056312	-1.2195	-0.00070704	579.7741677816769	83.195	0.405	83.934	83.694	84.099	0.73962					13	7	2	0	0	0	0.71464	1	31634	31634		33.445	11.698	1	1751900			47328	2769	34399	34672	46278	46278					-0.037163566329581954
SELPFIKSL	9	Unmodified	_SELPFIKSL_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-MSMS	A375_MHC_IP_R2	2	517.6995239257812	2	517.30005	1032.58555	-0.70534	-0.00036487	0.037343	1.9318E-05	-0.668	-0.00034556	517.3001132989164	98.482	0.50973	99.242	98.945	99.454	0.75977					15	9	2	0	0	0	0.1915	1	37361	37361		38.615	0	1	2224400			47329	6247	34400	34673	46279	46279					0.07055797762859584
SELPMPLLI	9	Unmodified	_SELPMPLLI_					0	0	0		ENSG00000172269|ENST00000354202|DPAGT1;ENST00000481084.5_1_11:118972203-118972365:-|nuORF;ENST00000472016.1_1_11:118971676-118972365:-|nuORF	ENSG00000172269|ENST00000354202|DPAGT1	ENSG00000172269|ENST00000354202|DPAGT1	MULTI-SECPEP	A375_MHC_IP_R2	2	507.19061279296875	2	506.791004	1011.56745	-0.67673	-0.00034296	-0.12223	-6.1944E-05	-0.79896	-0.0004049	506.7908554862821	132.94	0.25301	133.1	132.99	133.25	0.16487					8	4	3	0	0	0	0.73363	1	52334	52334		6.7232	2.7788	1	3858400			47330	7696	34401	34674	46280	46280					0.06213339516500582
SELPMPLLI	9	Unmodified	_SELPMPLLI_					0	0	0		ENSG00000172269|ENST00000354202|DPAGT1;ENST00000481084.5_1_11:118972203-118972365:-|nuORF;ENST00000472016.1_1_11:118971676-118972365:-|nuORF	ENSG00000172269|ENST00000354202|DPAGT1	ENSG00000172269|ENST00000354202|DPAGT1	MULTI-MATCH	A375_MHC_IP_R1	1		2	506.791004	1011.56745	-0.6354	-0.00032202	-0.20976	-0.00010631	-0.84517	-0.00042832	506.7908969458559	133.13	0.25546	133.13	133	133.25	0	0.012383	-3.6243E-05	NaN	6.7232	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2096400			47331	7696	34401	34674							0.06213339516500582
SELPQNPDL	9	Unmodified	_SELPQNPDL_					0	0	0			REV__ENSG00000121440|ENST00000263666|PDZRN3	REV__ENSG00000121440|ENST00000263666|PDZRN3	MSMS	A375_MHC_IP_R2	2	506.6478576660156	2	506.750921	1011.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.953	1	49.71	49.21	50.21	0.75737								0	0	0	0.15486	1	18387	18387		9.3831	0.035688	1		+		47332	18160	34402	34675	46281	46281					-0.017994305530010024
SELPRFQEL	9	Unmodified	_SELPRFQEL_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-SECPEP	A375_MHC_IP_R2	2	559.1759643554688	2	559.795663	1117.57677	-0.61205	-0.00034262	0.095846	5.3654E-05	-0.5162	-0.00028897	559.79562626561	73.503	0.81603	74.238	73.938	74.754	0.7354					29	15	3	0	0	0	0.13093	1	27912	27912		51.415	11.466	1	4335900			47333	4826	34403	34676	46282	46282					0.022688241263722375
SELPRLRA	8	Unmodified	_SELPRLRA_					0	0	0		ENST00000376406.7_1_6:30685397-30685574:-|nuORF	ENST00000376406.7_1_6:30685397-30685574:-|nuORF	ENST00000376406.7_1_6:30685397-30685574:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	471.6795349121094	2	471.279983	940.545414	-0.60468	-0.00028497	-0.062218	-2.9322E-05	-0.6669	-0.0003143	471.279869479684	28.92	0.30272	28.92	28.795	29.098	0					10	5	2	0	0	0	0.7754	1	9021	9021		11.64	0	1	2436100			47334	11283	34404	34677	46283	46283					0.0727629588294576
SELPTAKEY	9	Unmodified	_SELPTAKEY_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;ENST00000569448.1_1_16:8993400-8995074:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	519.6362915039062	2	519.261122	1036.50769	-0.55093	-0.00028607	-0.23724	-0.00012319	-0.78816	-0.00040926	519.2609419510746	34.212	1.6713	34.212	33.597	35.269	0					60	32	3	0	0	0	0.028087	1	11252	11252		96.367	52.508	1	100220000			47335	8836	34405	34678	46284	46284					-0.00910259893203147
SELPTAKEYF	10	Unmodified	_SELPTAKEYF_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;ENST00000569448.1_1_16:8993400-8995074:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	593.1942749023438	2	592.795329	1183.5761	-0.49766	-0.00029501	-0.055837	-3.31E-05	-0.5535	-0.00032811	592.7952908437062	65.765	0.81284	65.765	65.411	66.224	0					33	15	3	0	0	0	0.49165	1	23782	23782		49.527	13.021	1	8752500			47336	8836	34406	34679	46285	46285					-0.008340153133531203
SELPTAKEYF	10	Unmodified	_SELPTAKEYF_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;ENST00000569448.1_1_16:8993400-8995074:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	593.1956176757812	2	592.795329	1183.5761	-0.62226	-0.00036887	-0.29652	-0.00017578	-0.91878	-0.00054465	592.7951971402723	65.019	0.76137	65.758	65.461	66.222	0.73812					34	14	3	0	0	0	0.57412	1	24623	24623		43.982	11.196	1	8640400			47337	8836	34406	34679	46286	46286					-0.008340153133531203
SELQALRQY	9	Unmodified	_SELQALRQY_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-MSMS	A375_MHC_IP_R2	2	554.2369384765625	2	554.293288	1106.57202	-0.93187	-0.00051653	-1.3906	-0.00077081	-2.3225	-0.0012873	554.2918337212373	49.062	0.51034	49.82	49.434	49.944	0.75737					11	9	2	0	0	0	0.51106	1	18479	18479		19.257	4.4187	1	1137100			47338	8133	34407	34680	46287	46287					0.0229993998361806
SELQALRQY	9	Unmodified	_SELQALRQY_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-MATCH	A375_MHC_IP_R1	1		2	554.293288	1106.57202	-0.30454	-0.0001688	0.22475	0.00012458	-0.079791	-4.4228E-05	554.293481797198	49.799	0.3565	49.799	49.54	49.896	0	-0.010005	0.00031911	NaN	19.257	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1877700			47339	8133	34407	34680							0.0229993998361806
SELQARETF	9	Unmodified	_SELQARETF_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R1	1	541.16943359375	2	540.769645	1079.52474	-0.94749	-0.00051237	0.51891	0.00028061	-0.42858	-0.00023176	540.769861664921	38.293	0.96866	38.293	37.812	38.78	0					26	18	2	0	0	0	0.035151	1	12971	12971		103.82	39.863	1	18849000			47340	14788	34408	34681	46288	46288					-0.011843392873970515
SELQARETF	9	Unmodified	_SELQARETF_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R2	2	541.1272583007812	2	540.769645	1079.52474	-1.1661	-0.00063058	0.45128	0.00024404	-0.71481	-0.00038655	540.7698465174296	37.522	0.86565	38.293	37.767	38.632	0.7709					36	16	3	0	0	0	0.013536	1	13707	13707		91.085	33.363	1	20321000			47341	14788	34408	34681	46289	46289					-0.011843392873970515
SELQSIQRL	9	Unmodified	_SELQSIQRL_					0	0	0		nc|ENSG00000135111|O15119-3|TBX3;ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3	nc|ENSG00000135111|O15119-3|TBX3	nc|ENSG00000135111|O15119-3|TBX3	MULTI-MSMS	A375_MHC_IP_R1	1	537.7008666992188	2	537.301113	1072.58767	-0.87924	-0.00047242	0.42805	0.00022999	-0.45119	-0.00024242	537.3012563912096	53.01	0.55652	53.01	52.744	53.301	0					28	10	4	0	0	0	0.0085451	1	18845	18845		152.89	45.786	1	18579000			47342	4647	34409	34682	46290	46290					0.05428226500657729
SELQSIQRL	9	Unmodified	_SELQSIQRL_					0	0	0		nc|ENSG00000135111|O15119-3|TBX3;ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3	nc|ENSG00000135111|O15119-3|TBX3	nc|ENSG00000135111|O15119-3|TBX3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	537.301113	1072.58767	-1.2612	-0.00067765	0.083232	4.4721E-05	-1.178	-0.00063293	537.3011124841942	52.216	0.91241	52.969	52.677	53.59	0.75225	-0.020827	-0.0001887	NaN	152.89	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14200000			47343	4647	34409	34682							0.05428226500657729
SELQSLCFY	9	Unmodified	_SELQSLCFY_					0	0	0			REV__ENST00000413074.1_1_1:222763317-222763545:+|nuORF	REV__ENST00000413074.1_1_1:222763317-222763545:+|nuORF	MSMS	A375_MHC_IP_R1	1	545.2088623046875	2	545.2497	1088.48485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.499	1	85.499	84.999	85.999	0								0	0	0	0.15486	1	31334	31334		11.64	0	1		+		47344	24491	34410	34683	46291	46291					-0.055856022823036255
SELQSQVRY	9	Unmodified	_SELQSQVRY_					0	0	0		ENST00000584106.1_1_17:37026403-37055075:+|nuORF;ENSG00000002834|ENST00000318008|LASP1;nc|ENSG00000002834|Q14847-2|LASP1	ENST00000584106.1_1_17:37026403-37055075:+|nuORF	ENST00000584106.1_1_17:37026403-37055075:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	555.6826782226562	2	555.28292	1108.55129	-0.57423	-0.00031886	-0.37081	-0.00020591	-0.94504	-0.00052476	555.2828141853835	34.077	0.65881	34.077	33.898	34.557	0					18	12	2	0	0	0	0.13199	1	11212	11212		75.761	28.012	1	4726500			47345	856	34411	34684	46292	46292					0.001353496039428137
SELQSQVRY	9	Unmodified	_SELQSQVRY_					0	0	0		ENST00000584106.1_1_17:37026403-37055075:+|nuORF;ENSG00000002834|ENST00000318008|LASP1;nc|ENSG00000002834|Q14847-2|LASP1	ENST00000584106.1_1_17:37026403-37055075:+|nuORF	ENST00000584106.1_1_17:37026403-37055075:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	555.682373046875	2	555.28292	1108.55129	-1.1671	-0.00064804	0.14151	7.8577E-05	-1.0255	-0.00056947	555.2831250326869	33.35	0.7092	34.102	33.942	34.651	0.75225					20	13	2	0	0	0	0.21838	1	11955	11955		74.2	30.427	1	3755600			47346	856	34411	34684	46293	46293					0.001353496039428137
SELRGIMNY	9	Unmodified	_SELRGIMNY_					0	0	0		ENSG00000169306|ENST00000378993|IL1RAPL1;IL1RAPL1|p.E511K|1|0.34|ENSG00000169306|chrX:29955260-29955260|G/A|missense_variant	ENSG00000169306|ENST00000378993|IL1RAPL1	ENSG00000169306|ENST00000378993|IL1RAPL1	MULTI-SECPEP	A375_MHC_IP_R1	1	542.1683349609375	2	541.768591	1081.52263	-0.6161	-0.00033378	1.0869	0.00058883	0.47077	0.00025505	541.7689396386716	61.585	0.61222	61.585	61.279	61.891	0					19	11	2	0	0	0	0.11849	1	22222	22222		61.602	10.747	1	6813900			47347	7399	34412	34685	46294	46294					-0.014870912968262928
SELRGIMNY	9	Oxidation (M)	_SELRGIM(Oxidation (M))NY_		SELRGIM(1)NY		SELRGIM(58)NY	0	0	1		ENSG00000169306|ENST00000378993|IL1RAPL1;IL1RAPL1|p.E511K|1|0.34|ENSG00000169306|chrX:29955260-29955260|G/A|missense_variant	ENSG00000169306|ENST00000378993|IL1RAPL1	ENSG00000169306|ENST00000378993|IL1RAPL1	MULTI-SECPEP	A375_MHC_IP_R2	2	550.3466796875	2	549.766049	1097.51754	-0.8226	-0.00045224	-0.13185	-7.2485E-05	-0.95445	-0.00052472	549.7659051592801	39.681	0.65955	40.456	40.118	40.777	0.77451					16	12	2	0	0	0	0.20451	1	14775	14775		57.722	34.986	1	2916500			47348	7399	34412	34686	46295	46295		376			-0.02731395159457861
SELRKDIY	8	Unmodified	_SELRKDIY_					0	0	0		nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-2|DOCK4;ENST00000476846.1_7:111503332-111846439:-|nuORF	nc|ENSG00000128512|Q8N1I0|DOCK4	nc|ENSG00000128512|Q8N1I0|DOCK4	MULTI-SECPEP	A375_MHC_IP_R1	1	512.6768798828125	2	512.277106	1022.53966	-0.41748	-0.00021387	1.3034	0.00066771	0.88593	0.00045384	512.2780121122859	42.208	0.45421	42.208	41.982	42.436	0					19	8	3	0	0	0	0.8957	1	14622	14622		21.747	2.4897	1	3477800			47349	4139	34413	34687	46296	46296					0.029291525806002028
SELRRLSLL	9	Unmodified	_SELRRLSLL_					0	0	0		ENST00000546810.1_1_12:56367874-56383936:+|nuORF	ENST00000546810.1_1_12:56367874-56383936:+|nuORF	ENST00000546810.1_1_12:56367874-56383936:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	363.2535705566406	3	362.892507	1085.65569	-0.042008	-1.5244E-05	-1.382	-0.00050153	-1.424	-0.00051678	363.22522347065194	42.389	0.25537	43.161	42.962	43.218	0.7724					6	4	2	0	0	0	0.78719	1	15688	15688		5.7834	1.9071	1	1147100			47350	13334	34414	34688	46297	46297					0.11629096151318663
SELRRLSLL	9	Unmodified	_SELRRLSLL_					0	0	0		ENST00000546810.1_1_12:56367874-56383936:+|nuORF	ENST00000546810.1_1_12:56367874-56383936:+|nuORF	ENST00000546810.1_1_12:56367874-56383936:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	362.25384521484375	3	362.892507	1085.65569	-0.14696	-5.3331E-05	-0.30364	-0.00011019	-0.4506	-0.00016352	362.89239159199906	32.48	0.30582	33.217	33.061	33.367	0.73691					8	5	2	0	0	0	0.76642	1	11501	11501		5.7834	1.9071	1	3017800			47351	13334	34414	34688	46298	46298					0.11629096151318663
SELRSQSW	8	Unmodified	_SELRSQSW_					0	0	0		ENSG00000111615|ENST00000229214|KRR1	ENSG00000111615|ENST00000229214|KRR1	ENSG00000111615|ENST00000229214|KRR1	MULTI-MSMS	A375_MHC_IP_R1	1	497.14312744140625	2	496.743431	991.472308	-0.63674	-0.0003163	0.15022	7.4623E-05	-0.48652	-0.00024168	496.74343489274634	32.659	0.40278	32.659	32.434	32.836	0					13	7	2	0	0	0	0.16884	1	10586	10586		72.968	7.7329	1	3042600			47352	3002	34415	34689	46299	46299					-0.023768776303313643
SELRSQSW	8	Unmodified	_SELRSQSW_					0	0	0		ENSG00000111615|ENST00000229214|KRR1	ENSG00000111615|ENST00000229214|KRR1	ENSG00000111615|ENST00000229214|KRR1	MULTI-MSMS	A375_MHC_IP_R2	2	497.1849365234375	2	496.743431	991.472308	-0.49009	-0.00024345	1.5562	0.00077302	1.0661	0.00052957	496.74462581447625	31.977	0.65795	32.714	32.504	33.162	0.73692					16	12	2	0	0	0	0.62444	1	11274	11274		43.858	3.901	1	2354600			47353	3002	34415	34689	46300	46300					-0.023768776303313643
SELSALFFEA	10	Unmodified	_SELSALFFEA_					0	0	0			REV__PLEKHM2|p.K699E|1|0.14|ENSG00000116786|chr1:15729816-15729816|A/G|missense_variant	REV__PLEKHM2|p.K699E|1|0.14|ENSG00000116786|chr1:15729816-15729816|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	556.674072265625	2	557.276772	1112.53899	-0.88688	-0.00049424	1.4376	0.00080116	0.55076	0.00030692	557.2776246514151	44.897	0.81303	45.666	45.188	46.001	0.7691					23	15	2	0	0	0	0.61429	1	16733	16733		30.637	11.38	1	7672500	+		47354	27805	34416	34690	46301	46301					-0.01277686859066307
SELSLSPQTF	10	Unmodified	_SELSLSPQTF_					0	0	0			REV__ENST00000484122.5_1_17:12896137-12899859:-|nuORF	REV__ENST00000484122.5_1_17:12896137-12899859:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	554.160888671875	2	554.779679	1107.5448	-0.52621	-0.00029193	0.12418	6.8895E-05	-0.40203	-0.00022304	554.78000801184	23.152	0.30264	23.152	22.924	23.227	0					11	5	3	0	0	0	0.91556	1	6299	6299		10.074	6.7926	1	4344400	+		47355	25297	34417	34691	46302	46302					-0.004665883474444854
SELSNRPV	8	Unmodified	_SELSNRPV_					0	0	0			REV__nc|ENSG00000198718|Q9Y4F4|TOGARAM1	REV__nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MULTI-MSMS	A375_MHC_IP_R1	1	451.6530456542969	2	451.240524	900.466495	-0.1926	-8.691E-05	0.13267	5.9865E-05	-0.059936	-2.7046E-05	451.2405002210449	31.338	0.45622	31.338	31.16	31.616	0					13	8	2	0	0	0	0.7479	1	9997	9997		20.871	2.7362	1	1668500	+		47356	22401	34418	34692	46303	46303					0.012280238579933211
SELSSLWHSE	10	Unmodified	_SELSSLWHSE_					0	0	0			REV__nc|ENSG00000171100|Q13496-2|MTM1	REV__nc|ENSG00000171100|Q13496-2|MTM1	MULTI-SECPEP	A375_MHC_IP_R2	2	392.28521728515625	3	392.184016	1173.53022	-0.66362	-0.00026026	0.32225	0.00012638	-0.34137	-0.00013388	392.1841263642876	28.531	0.405	29.219	28.867	29.272	0.68718					11	7	3	0	0	0	0.91556	1	9742	9742		3.3196	0	1	3734600	+		47357	21041	34419	34693	46304	46304					-0.049606604955670264
SELTAHIA	8	Unmodified	_SELTAHIA_					0	0	0			REV__ENSG00000149256|ENST00000278550|TENM4	REV__ENSG00000149256|ENST00000278550|TENM4	MULTI-MSMS	A375_MHC_IP_R1	1	421.2917785644531	2	421.224342	840.434132	-0.15679	-6.6043E-05	-0.55263	-0.00023278	-0.70942	-0.00029882	421.2260810466742	19.243	0.14727	19.243	19.221	19.368	0					6	4	2	0	0	0	0.77702	1	4709	4709		5.7604	0	1	15060000	+		47358	19669	34420	34694	46305	46305					0.007532364549888371
SELTAHIA	8	Unmodified	_SELTAHIA_					0	0	0			REV__ENSG00000149256|ENST00000278550|TENM4	REV__ENSG00000149256|ENST00000278550|TENM4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	421.224342	840.434132	-0.15679	-6.6043E-05	-0.55263	-0.00023278	-0.70942	-0.00029882	421.2260810466742	19.243	0.14727	19.243	19.221	19.368	0	0	0	NaN	5.7604	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15060000	+		47359	19669	34420	34694							0.007532364549888371
SELTHFYEV	9	Unmodified	_SELTHFYEV_					0	0	0		ENSG00000170871|ENST00000307659|KIAA0232	ENSG00000170871|ENST00000307659|KIAA0232	ENSG00000170871|ENST00000307659|KIAA0232	MULTI-SECPEP	A375_MHC_IP_R2	2	562.2054443359375	2	562.766571	1123.51859	-0.49464	-0.00027837	-0.86869	-0.00048887	-1.3633	-0.00076724	562.7665680888865	67.706	0.66245	68.442	68.155	68.817	0.73631					34	12	4	0	0	0	0.65246	1	25714	25714		10.824	0	1	12440000			47360	7550	34421	34695	46306	46306					-0.03822857518912315
SELVFWRW	8	Unmodified	_SELVFWRW_					0	0	0		ENST00000551538.5_1_14:105963624-105963882:+|nuORF;nc|ENSG00000185347|Q86SX3-4|TEDC1;ENST00000546536.5_1_14:105957646-105963882:+|nuORF;nc|ENSG00000185347|Q86SX3-5|TEDC1;nc|ENSG00000185347|Q86SX3-3|TEDC1;nc|ENSG00000185347|Q86SX3-2|TEDC1;nc|ENSG00000185347|Q86SX3-6|TEDC1;ENSG00000185347|ENST00000392523|TEDC1	ENST00000551538.5_1_14:105963624-105963882:+|nuORF	ENST00000551538.5_1_14:105963624-105963882:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	374.9394226074219	3	374.862548	1121.56581	0.25948	9.727E-05	-2.6713	-0.0010014	-2.4118	-0.00090409	374.86169533736614	19.788	0.45789	19.788	19.471	19.928	0					10	8	2	0	0	0	0.94479	1	4983	4983		10.074	0	1	798230			47361	8660	34422	34696	46307	46307					0.009894665427509608
SELVGQLYK	9	Unmodified	_SELVGQLYK_					0	0	0		nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;nc|ENSG00000087470|O00429-7|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1869506835938	2	518.787307	1035.56006	-0.74597	-0.000387	-0.34453	-0.00017874	-1.0905	-0.00056574	518.7871286259154	25.841	0.45583	25.841	25.714	26.17	0					10	8	2	0	0	0	0.74412	1	7644	7644		10.074	1.3285	1	3011600			47362	1874	34423	34697	46308	46308					0.04370323240414109
SELVYLFMF	9	Unmodified	_SELVYLFMF_					0	0	0			REV__ENSG00000162753|ENST00000367714|SLC9C2	REV__ENSG00000162753|ENST00000367714|SLC9C2	MULTI-SECPEP	A375_MHC_IP_R2	2	574.6581420898438	2	574.788461	1147.56237	-0.25156	-0.00014459	0.44231	0.00025424	0.19076	0.00010964	574.788505692348	74.471	0.56073	75.209	74.958	75.519	0.73752					15	10	2	0	0	0	0.77834	1	28278	28278		8.5933	8.5933	1	1191000	+		47363	20303	34424	34698	46309	46309					-0.005509643461437008
SELYGVPETL	10	Unmodified	_SELYGVPETL_					0	0	0			REV__ENSG00000136932|ENST00000375119|TRMO	REV__ENSG00000136932|ENST00000375119|TRMO	MULTI-MSMS	A375_MHC_IP_R2	2	554.6810302734375	2	554.282054	1106.54956	-0.85793	-0.00047554	-0.75826	-0.00042029	-1.6162	-0.00089583	554.2814410096469	55.458	0.60749	56.209	55.933	56.54	0.75075					25	11	3	0	0	0	0.55789	1	20936	20936		24.021	4.7636	1	6008700	+		47364	18975	34425	34699	46310	46310					0.0005429579534848017
SELYGVPETL	10	Unmodified	_SELYGVPETL_					0	0	0			REV__ENSG00000136932|ENST00000375119|TRMO	REV__ENSG00000136932|ENST00000375119|TRMO	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	554.282054	1106.54956	-0.42709	-0.00023673	-0.9048	-0.00050152	-1.3319	-0.00073824	554.2814957398822	56.366	0.55783	56.366	56.092	56.65	0	0.078639	-6.4304E-05	NaN	24.021	26	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8015100	+		47365	18975	34425	34699							0.0005429579534848017
SELYGVPETL	10	Unmodified	_SELYGVPETL_					0	0	0			REV__ENSG00000136932|ENST00000375119|TRMO	REV__ENSG00000136932|ENST00000375119|TRMO	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	554.282054	1106.54956	-0.85793	-0.00047554	-0.75826	-0.00042029	-1.6162	-0.00089583	554.2814410096469	55.458	0.60749	56.209	55.933	56.54	0.75075	-0.078639	9.8146E-05	NaN	24.021	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6008700	+		47366	18975	34425	34699							0.0005429579534848017
SELYQKTYW	9	Unmodified	_SELYQKTYW_					0	0	0		ENSG00000151176|ENST00000280800|PLBD2;nc|ENSG00000151176|Q8NHP8-2|PLBD2	ENSG00000151176|ENST00000280800|PLBD2	ENSG00000151176|ENST00000280800|PLBD2	MULTI-MSMS	A375_MHC_IP_R1	1	609.6946411132812	2	609.295496	1216.57644	-0.21799	-0.00013282	-1.6303	-0.00099331	-1.8482	-0.0011261	609.2940995159215	62.491	0.81873	62.491	62.148	62.966	0					32	15	3	0	0	0	0.030891	3	22561	22561;22600;22624		74.2	48.8	1	2025900			47367	5885	34426	34700	46311;46312;46313	46311					-0.023185955934650337
SELYSPFSTW	10	Unmodified	_SELYSPFSTW_					0	0	0		tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	609.1795043945312	2	608.779679	1215.5448	-0.27088	-0.00016491	0.034007	2.0703E-05	-0.23687	-0.0001442	608.7795314205222	88.218	0.30677	88.218	88.052	88.358	0					9	5	2	0	0	0	0.78945	1	32408	32408		25.399	1.3787	1	3880800			47368	30058	34427	34701	46314	46314					-0.05434588347429781
SEMAAPPLSG	10	Unmodified	_SEMAAPPLSG_					0	0	0			REV__nc|ENSG00000075651|Q13393-4|PLD1	REV__nc|ENSG00000075651|Q13393-4|PLD1	MSMS	A375_MHC_IP_R1	1	480.1552429199219	2	480.228768	958.442982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.271	1	43.271	42.771	43.771	0								0	0	0	0.1524	1	15034	15034		13.042	5.7532	1		+		47369	16660	34428	34702	46315	46315					-0.03790157970831842
SEMDSERLQY	10	Unmodified	_SEMDSERLQY_					0	0	0		nc|ENSG00000110841|Q86W92-3|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;ENST00000534917.1_1_12:27807636-27809701:+|nuORF	nc|ENSG00000110841|Q86W92-3|PPFIBP1;ENST00000534917.1_1_12:27807636-27809701:+|nuORF	nc|ENSG00000110841|Q86W92-3|PPFIBP1	MULTI-MSMS	A375_MHC_IP_R1	1	629.6741333007812	2	629.274435	1256.53432	-0.49114	-0.00030906	-0.096287	-6.0591E-05	-0.58743	-0.00036965	629.274294404124	42.416	0.75907	42.416	42.132	42.891	0					25	14	2	0	0	0	0.012014	1	14671	14671		91.085	57.64	1	2372700			47370	14540;13218	34429	34703	46316	46316					-0.08368939064143888
SEMDSERLQY	10	Unmodified	_SEMDSERLQY_					0	0	0		nc|ENSG00000110841|Q86W92-3|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;ENST00000534917.1_1_12:27807636-27809701:+|nuORF	nc|ENSG00000110841|Q86W92-3|PPFIBP1;ENST00000534917.1_1_12:27807636-27809701:+|nuORF	nc|ENSG00000110841|Q86W92-3|PPFIBP1	MULTI-MSMS	A375_MHC_IP_R2	2	629.6742553710938	2	629.274435	1256.53432	-0.85575	-0.0005385	0.038119	2.3987E-05	-0.81763	-0.00051452	629.2743517553093	41.738	0.56079	42.513	42.198	42.759	0.77451					19	10	2	0	0	0	0.0068576	1	15495	15495		132.38	92.14	1	3715100			47371	14540;13218	34429	34703	46317	46317					-0.08368939064143888
SEMDTSVKF	9	Unmodified	_SEMDTSVKF_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ENST00000460641.1_1_2:187529903-187532515:+|nuORF	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	A375_MHC_IP_R1	1	522.6390380859375	2	522.239332	1042.46411	-0.4953	-0.00025867	-0.026976	-1.4088E-05	-0.52228	-0.00027275	522.2393165648385	50.688	0.45585	50.688	50.459	50.915	0					12	8	2	0	0	0	0.066859	1	17992	17992		57.722	19.748	1	2928500			47372	4996	34430	34704	46318	46318					-0.055421926619601436
SEMDTSVKF	9	Unmodified	_SEMDTSVKF_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ENST00000460641.1_1_2:187529903-187532515:+|nuORF	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	A375_MHC_IP_R2	2	522.6390380859375	2	522.239332	1042.46411	-0.8103	-0.00042317	-0.027015	-1.4109E-05	-0.83731	-0.00043728	522.2393774329094	49.988	0.50909	50.742	50.497	51.006	0.75406					19	9	3	0	0	0	0.073067	1	18793	18793		55.503	17.529	1	3324800			47373	4996	34430	34704	46319	46319					-0.055421926619601436
SEMDTSVKF	9	Oxidation (M)	_SEM(Oxidation (M))DTSVKF_		SEM(1)DTSVKF		SEM(68)DTSVKF	0	0	1		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ENST00000460641.1_1_2:187529903-187532515:+|nuORF	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-SECPEP	A375_MHC_IP_R1	1	530.6366577148438	2	530.23679	1058.45903	-0.50136	-0.00026584	0.42967	0.00022783	-0.071689	-3.8012E-05	530.237170096327	34.992	0.76311	34.992	34.81	35.573	0					27	14	3	0	0	0	0.090157	1	11608	11608		67.838	37.202	1	5727400			47374	4996	34430	34705	46320	46320		265			-0.06786496524591712
SEMDTSVKF	9	Oxidation (M)	_SEM(Oxidation (M))DTSVKF_		SEM(1)DTSVKF		SEM(100)DTSVKF	0	0	1		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ENST00000460641.1_1_2:187529903-187532515:+|nuORF	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-SECPEP	A375_MHC_IP_R2	2	530.6361694335938	2	530.23679	1058.45903	-0.87912	-0.00046614	0.48489	0.00025711	-0.39423	-0.00020904	530.2372091636058	34.302	0.76235	35.054	34.853	35.616	0.75225					23	14	3	0	0	0	0.025037	1	12357	12357		100.09	56.232	1	5502300			47375	4996	34430	34705	46321	46321		265			-0.06786496524591712
SEMDVTGQAF	10	Oxidation (M)	_SEM(Oxidation (M))DVTGQAF_		SEM(1)DVTGQAF		SEM(46)DVTGQAF	0	0	1		ENSG00000155827|ENST00000389120|RNF20;ENSG00000103549|ENST00000324685|RNF40;nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;nc|ENSG00000103549|O75150-4|RNF40	ENSG00000155827|ENST00000389120|RNF20;ENSG00000103549|ENST00000324685|RNF40	ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	A375_MHC_IP_R1	1	550.7271728515625	2	550.731871	1099.44919	-0.50689	-0.00027916	0.35657	0.00019637	-0.15032	-8.2785E-05	550.7320548476596	50.898	0.76001	50.898	50.613	51.373	0					25	14	3	0	0	0	0.2347	1	18080	18080		45.7	33.168	1	3554100			47376	6157;2462	34431	34706	46322	46322		109			-0.09655684529980135
SEMDVTGQAF	10	Unmodified	_SEMDVTGQAF_					0	0	0		ENSG00000155827|ENST00000389120|RNF20;ENSG00000103549|ENST00000324685|RNF40;nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;nc|ENSG00000103549|O75150-4|RNF40	ENSG00000155827|ENST00000389120|RNF20;ENSG00000103549|ENST00000324685|RNF40	ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	A375_MHC_IP_R2	2	542.639892578125	2	542.734414	1083.45428	-1.1131	-0.00060411	-2.5887	-0.001405	-3.7018	-0.0020091	543.2340876924234	71.837	0.45583	72.572	72.264	72.72	0.73421					10	8	2	0	0	0	0.13478	1	27250	27250		56.177	38.031	1	1293100			47377	6157;2462	34431	34707	46323	46323					-0.08411380667371304
SEMEMAHLY	9	Unmodified	_SEMEMAHLY_					0	0	0		ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	MSMS	A375_MHC_IP_R1	1	555.6903076171875	2	555.73336	1109.45217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.818	1	61.818	61.318	62.318	0								0	0	0	0.15283	1	22305	22305		16.942	1.0951	1				47378	6067	34432	34708	46324	46324					-0.09818132676787172
SEMEMAHLY	9	Unmodified	_SEMEMAHLY_					0	0	0		ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	MULTI-SECPEP	A375_MHC_IP_R2	2	556.1328125	2	555.73336	1109.45217	-1.0866	-0.00060384	0.53758	0.00029875	-0.54898	-0.00030509	555.733521201571	61.314	0.45393	62.059	61.718	62.172	0.74504					15	8	2	0	0	0	0.3243	1	23202	23202		36.044	25.97	1	1886400			47379	6067	34432	34708	46325	46325					-0.09818132676787172
SEMEMAHLY	9	Oxidation (M)	_SEMEM(Oxidation (M))AHLY_		SEM(0.001)EM(0.999)AHLY		SEM(-29)EM(29)AHLY	0	0	1		ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	MULTI-MSMS	A375_MHC_IP_R2	2	564.1304931640625	2	563.730817	1125.44708	-0.73848	-0.0004163	-0.19247	-0.0001085	-0.93095	-0.0005248	563.7307136235369	41.251	0.50602	42.026	41.743	42.249	0.77451					15	9	2	0	0	0	0.083809	1	15352	15352		53.576	39.67	2	2172700			47380	6067	34432	34709	46326	46326		323			-0.11062436539418741
SEMEMAHLY	9	Oxidation (M)	_SEMEM(Oxidation (M))AHLY_					0	0	1		ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	MULTI-MATCH	A375_MHC_IP_R1	1		2	563.730817	1125.44708	-0.46802	-0.00026384	-0.54805	-0.00030895	-1.0161	-0.00057279	563.7306184134978	41.952	0.61031	41.952	41.725	42.336	0	-0.037133	-0.00022799	NaN	53.576	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1902100			47381	6067	34432	34709				323			-0.11062436539418741
SEMEMEAEH	9	Unmodified	_SEMEMEAEH_					0	0	0		nc|ENSG00000141084|Q6VN20-3|RANBP10;ENSG00000141084|ENST00000317506|RANBP10;ENST00000602506.5_1_16:67760333-67793575:-|nuORF;nc|ENSG00000141084|Q6VN20-2|RANBP10	nc|ENSG00000141084|Q6VN20-3|RANBP10	nc|ENSG00000141084|Q6VN20-3|RANBP10	MULTI-MSMS	A375_MHC_IP_R2	2	547.1693725585938	2	546.702257	1091.38996	-0.85369	-0.00046671	-0.21903	-0.00011975	-1.0727	-0.00058646	547.2037457305828	39.494	0.35468	40.269	40.016	40.371	0.77451					9	6	2	0	0	0	0.69674	1	14579	14579		7.2892	1.5288	1	1497400			47382	5213	34433	34710	46327	46327					-0.15207903815803547
SEMESASSSIC	11	Unmodified	_SEMESASSSIC_					0	0	0			REV__nc|ENSG00000112701|Q9GZR1-2|SENP6	REV__nc|ENSG00000112701|Q9GZR1-2|SENP6	MSMS	A375_MHC_IP_R2	2	565.626220703125	2	565.720646	1129.42674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.27	1	28.949	28.449	29.449	0.67857								0	0	0	0.14837	1	9744	9744		21.537	1.0834	1		+		47383	17749	34434	34711	46328	46328					-0.13279651989887498
SEMFAKKHGY	10	Unmodified	_SEMFAKKHGY_					0	0	0		ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	MULTI-SECPEP	A375_MHC_IP_R1	1	399.2630920410156	3	399.862219	1196.56483	-0.42647	-0.00017053	0.04789	1.9149E-05	-0.37858	-0.00015138	399.8623816864206	19.343	0.23279	19.343	19.238	19.471	0					13	4	4	0	0	0	0.50381	1	4761	4761		33.445	23.901	1	15410000			47384	6160	34435	34712	46329	46329					-0.025591158884481047
SEMLHGFLS	9	Unmodified	_SEMLHGFLS_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MSMS	A375_MHC_IP_R2	2	510.69140625	2	510.744585	1019.47462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.263	1	73.998	73.498	74.498	0.73541								0	0	0	0.1535	1	27809	27809		15.847	1.9411	1		+		47385	20249	34436	34713	46330	46330					-0.03434165216867768
SEMLQKNYY	9	Unmodified	_SEMLQKNYY_					0	0	0		GDA|p.S204Y|1|0.36|ENSG00000119125|chr9:72223124-72223124|C/A|missense_variant	GDA|p.S204Y|1|0.36|ENSG00000119125|chr9:72223124-72223124|C/A|missense_variant	GDA|p.S204Y|1|0.36|ENSG00000119125|chr9:72223124-72223124|C/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	392.9179382324219	3	392.51823	1174.53286	0.043115	1.6923E-05	-0.46554	-0.00018273	-0.42242	-0.00016581	392.51796650859023	28.313	0.50402	28.313	27.987	28.491	0					15	9	2	0	0	0	0.78798	1	8736	8736		4.5289	0	1	5382200			47386	14040	34437	34714	46331	46331					-0.04742528362271514
SEMNVNMKY	9	2 Oxidation (M)	_SEM(Oxidation (M))NVNM(Oxidation (M))KY_		SEM(1)NVNM(1)KY		SEM(52)NVNM(52)KY	0	0	2		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET;nc|ENSG00000105976|P08581-3|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-MSMS	A375_MHC_IP_R1	1	575.1429443359375	2	574.241549	1146.46855	-0.004507	-2.5881E-06	-0.079707	-4.5771E-05	-0.084214	-4.8359E-05	574.2414614883742	21.141	1.0673	21.141	20.793	21.86	0					31	20	2	0	0	0	0.094655	1	5479	5479		51.63	37.724	1	3038500			47387	2654	34438	34715	46332	46332		121;122			-0.09883051510678342
SEMNVNMKY	9	2 Oxidation (M)	_SEM(Oxidation (M))NVNM(Oxidation (M))KY_		SEM(1)NVNM(1)KY		SEM(86)NVNM(86)KY	0	0	2		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET;nc|ENSG00000105976|P08581-3|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-MSMS	A375_MHC_IP_R2	2	574.6412963867188	2	574.241549	1146.46855	-0.55167	-0.00031679	0.0028608	1.6428E-06	-0.54881	-0.00031515	574.2414828655579	20.777	0.76004	21.387	21.059	21.819	0.61029					33	14	3	0	0	0	0.017727	1	6439	6439		86.332	60.064	1	2423600			47388	2654	34438	34715	46333	46333		121;122			-0.09883051510678342
SEMNVNMKY	9	Unmodified	_SEMNVNMKY_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET;nc|ENSG00000105976|P08581-3|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-MSMS	A375_MHC_IP_R2	2	558.6469116210938	2	558.246634	1114.47872	-0.75877	-0.00042358	1.6029	0.00089482	0.84414	0.00047124	558.247410430124	41.77	0.51042	42.544	42.198	42.709	0.77451					15	9	2	0	0	0	0.084766	1	15514	15514		53.404	28.005	1	4728200			47389	2654	34438	34716	46334	46334					-0.0739444378546068
SEMPAAKRL	9	Unmodified	_SEMPAAKRL_					0	0	0		ENSG00000125651|ENST00000394456|GTF2F1;ENST00000594213.5_1_19:6380485-6381059:-|nuORF	ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	MULTI-MSMS	A375_MHC_IP_R1	1	502.1735534667969	2	501.773677	1001.5328	-0.65116	-0.00032673	0.35464	0.00017795	-0.29651	-0.00014878	501.773701077697	23.459	0.30649	23.459	23.278	23.584	0					16	5	4	0	0	0	0.015356	1	6448	6448		89.401	65.38	1	22531000			47390	3976	34439	34717	46335	46335					0.0320951642838736
SEMPAAKRL	9	Unmodified	_SEMPAAKRL_					0	0	0		ENSG00000125651|ENST00000394456|GTF2F1;ENST00000594213.5_1_19:6380485-6381059:-|nuORF	ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	MULTI-MSMS	A375_MHC_IP_R2	2	502.17315673828125	2	501.773677	1001.5328	-0.94718	-0.00047527	0.16407	8.2325E-05	-0.78311	-0.00039295	501.77369688201793	21.252	0.6079	21.871	21.422	22.03	0.61932					21	11	3	0	0	0	0.51106	1	6606	6606		19.257	14.026	1	7555700			47391	3976	34439	34717	46336	46336					0.0320951642838736
SEMRFVQDL	9	Oxidation (M)	_SEM(Oxidation (M))RFVQDL_		SEM(1)RFVQDL		SEM(72)RFVQDL	0	0	1		ENSG00000167657|ENST00000545797|DAPK3;ENST00000595279.1_1_19:3959101-3961233:-|nuORF	ENSG00000167657|ENST00000545797|DAPK3	ENSG00000167657|ENST00000545797|DAPK3	MULTI-MSMS	A375_MHC_IP_R1	1	571.1713256835938	2	570.771331	1139.52811	-0.21841	-0.00012466	0.070482	4.0229E-05	-0.14793	-8.4436E-05	570.7714421474612	52.051	0.55812	52.051	51.829	52.387	0					15	10	2	0	0	0	0.033808	1	18525	18525		71.708	20.078	1	2909500			47392	7206	34440	34718	46337	46337		365			-0.036074125050163275
SEMRFVQDL	9	Oxidation (M)	_SEM(Oxidation (M))RFVQDL_		SEM(1)RFVQDL		SEM(68)RFVQDL	0	0	1		ENSG00000167657|ENST00000545797|DAPK3;ENST00000595279.1_1_19:3959101-3961233:-|nuORF	ENSG00000167657|ENST00000545797|DAPK3	ENSG00000167657|ENST00000545797|DAPK3	MULTI-MSMS	A375_MHC_IP_R2	2	571.171142578125	2	570.771331	1139.52811	-0.47375	-0.0002704	-0.27924	-0.00015938	-0.75299	-0.00042979	570.7712221919824	51.356	0.66061	52.108	51.813	52.473	0.75225					17	12	2	0	0	0	0.04093	1	19343	19343		67.838	27.888	1	2983000			47393	7206	34440	34718	46338	46338		365			-0.036074125050163275
SEMRFVQDL	9	Unmodified	_SEMRFVQDL_					0	0	0		ENSG00000167657|ENST00000545797|DAPK3;ENST00000595279.1_1_19:3959101-3961233:-|nuORF	ENSG00000167657|ENST00000545797|DAPK3	ENSG00000167657|ENST00000545797|DAPK3	MULTI-SECPEP	A375_MHC_IP_R1	1	563.173095703125	2	562.773874	1123.53319	-0.44696	-0.00025153	-0.013116	-7.3815E-06	-0.46007	-0.00025892	562.7733297207897	73.722	1.0123	73.722	73.235	74.247	0					31	19	3	0	0	0	0.31976	1	26837	26837		63.961	29.858	1	3680400			47394	7206	34440	34719	46339	46339					-0.02363108642384759
SEMRFVQDL	9	Unmodified	_SEMRFVQDL_					0	0	0		ENSG00000167657|ENST00000545797|DAPK3;ENST00000595279.1_1_19:3959101-3961233:-|nuORF	ENSG00000167657|ENST00000545797|DAPK3	ENSG00000167657|ENST00000545797|DAPK3	MULTI-MSMS	A375_MHC_IP_R2	2	563.1734619140625	2	562.773874	1123.53319	-0.58021	-0.00032653	0.8389	0.00047211	0.25869	0.00014558	562.7734425035464	72.901	0.55866	73.636	73.328	73.887	0.7354					35	10	5	0	0	0	0.062639	1	27687	27687		59.368	22.862	1	4616600			47395	7206	34440	34719	46340	46340					-0.02363108642384759
SEMTNLYTQGD	11	Unmodified	_SEMTNLYTQGD_					0	0	0			REV__ENSG00000150361|ENST00000377844|KLHL1	REV__ENSG00000150361|ENST00000377844|KLHL1	MULTI-MSMS	A375_MHC_IP_R1	1	420.5777282714844	3	420.180054	1257.51833	0.082473	3.4653E-05	0.88623	0.00037238	0.96871	0.00040703	420.5154805161289	61.661	0.81771	61.661	61.279	62.097	0					23	15	2	0	0	0	0.73715	1	22398	22398		2.084	0.34169	1	12214000	+		47396	19711	34441	34720	46341	46341					-0.10012645301071643
SEMVPVISSMY	11	Unmodified	_SEMVPVISSMY_					0	0	0		nc|ENSG00000161405|Q9UKT9-16|IKZF3;nc|ENSG00000161405|Q9UKT9-12|IKZF3;nc|ENSG00000161405|Q9UKT9-11|IKZF3;nc|ENSG00000161405|Q9UKT9-10|IKZF3;nc|ENSG00000161405|Q9UKT9-13|IKZF3;nc|ENSG00000161405|Q9UKT9-5|IKZF3;nc|ENSG00000161405|Q9UKT9-9|IKZF3;nc|ENSG00000161405|Q9UKT9-6|IKZF3;nc|ENSG00000161405|Q9UKT9-8|IKZF3;nc|ENSG00000161405|Q9UKT9-2|IKZF3;nc|ENSG00000161405|Q9UKT9-15|IKZF3;nc|ENSG00000161405|Q9UKT9-4|IKZF3;nc|ENSG00000161405|Q9UKT9-3|IKZF3;nc|ENSG00000161405|Q9UKT9-7|IKZF3;ENSG00000161405|ENST00000346872|IKZF3	nc|ENSG00000161405|Q9UKT9-16|IKZF3	nc|ENSG00000161405|Q9UKT9-16|IKZF3	MULTI-MSMS	A375_MHC_IP_R2	2	622.190673828125	2	621.790875	1241.5672	-0.58659	-0.00036473	-0.16166	-0.00010052	-0.74825	-0.00046525	621.7913471073756	43.329	0.40631	44.101	43.926	44.333	0.7724					13	7	2	0	0	0	0.73016	1	16155	16155		8.7454	0.15213	1	2008800			47397	6473	34442	34721	46342	46342					-0.04392448265662097
SENAASVISY	10	Unmodified	_SENAASVISY_					0	0	0		ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	MULTI-SECPEP	A375_MHC_IP_R1	1	521.1478881835938	2	520.748379	1039.4822	-0.41468	-0.00021595	-0.17035	-8.871E-05	-0.58503	-0.00030466	520.7482164756068	62.325	0.61425	62.325	61.994	62.609	0					17	11	2	0	0	0	0.36543	1	22477	22477		57.249	20.743	1	4355900			47398	8075	34443	34722	46343	46343					-0.03595734415603147
SENAASVISY	10	Unmodified	_SENAASVISY_					0	0	0		ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	MULTI-SECPEP	A375_MHC_IP_R2	2	521.1478271484375	2	520.748379	1039.4822	-0.95178	-0.00049564	-0.14874	-7.7459E-05	-1.1005	-0.0005731	520.7481754337172	61.631	0.65497	62.376	62.02	62.675	0.74503					23	12	3	0	0	0	0.055108	1	23362	23362		96.936	23.968	1	3524500			47399	8075	34443	34722	46344	46344					-0.03595734415603147
SENAERILF	9	Unmodified	_SENAERILF_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-MSMS	A375_MHC_IP_R1	1	539.6963500976562	2	539.780013	1077.54547	-0.8736	-0.00047155	-1.2719	-0.00068653	-2.1455	-0.0011581	539.7790741102976	66.675	0.97025	66.675	66.275	67.245	0					31	16	3	0	0	0	0.21241	1	24089	24089		37.075	11.675	1	5406600			47400	3825	34444	34723	46345	46345					0.009802510922781948
SENAERILF	9	Unmodified	_SENAERILF_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MSMS	A375_MHC_IP_R2	2	539.6961669921875	2	539.780013	1077.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.716	1	66.455	65.955	66.955	0.73811								0	0	0	0.06041	1	24915	24915		51.415	17.313	1				47401	3825	34444	34723	46346	46346					0.009802510922781948
SENAERILI	9	Unmodified	_SENAERILI_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	A375_MHC_IP_R2	2	523.187255859375	2	522.787838	1043.56112	-0.75382	-0.00039409	-0.26291	-0.00013744	-1.0167	-0.00053153	522.7876822167291	55.917	1.0204	56.667	56.388	57.408	0.75015					42	19	3	0	0	0	0.035151	1	21111	21111		103.82	31.901	1	14815000			47402	2058	34445	34724	46347	46347					0.04108537609340601
SENAERILY	9	Unmodified	_SENAERILY_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MSMS	A375_MHC_IP_R1	1	547.6881103515625	2	547.77747	1093.54039	-0.063536	-3.4803E-05	-0.46276	-0.00025349	-0.52629	-0.00028829	547.7772840333332	45.157	0.70667	45.157	44.827	45.534	0					25	13	3	0	0	0	0.014789	1	15819	15819		90.135	36.302	1	7374000			47403	5872	34446	34725	46348	46348					-0.0026405277030789875
SENAERILY	9	Unmodified	_SENAERILY_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MSMS	A375_MHC_IP_R2	2	548.1769409179688	2	547.77747	1093.54039	-0.69034	-0.00037815	0.80484	0.00044087	0.1145	6.272E-05	547.7781089817219	44.329	1.1116	45.098	44.228	45.34	0.76909					42	21	3	0	0	0	0.014789	1	16478	16478		90.135	27.562	1	6498200			47404	5872	34446	34725	46349	46349					-0.0026405277030789875
SENAGIQSL	9	Unmodified	_SENAGIQSL_					0	0	0		nc|ENSG00000039560|Q9P0K7-4|RAI14;nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	MULTI-SECPEP	A375_MHC_IP_R1	1	460.1298828125	2	459.729989	917.445425	-0.12794	-5.882E-05	0.14289	6.5692E-05	0.014949	6.8723E-06	459.7300521707769	51.283	0.60785	51.283	51.017	51.625	0					23	11	3	0	0	0	0.011191	1	18178	18178		121.53	13.537	1	4812200			47405	1160	34447	34726	46350	46350					-0.01659986241520528
SENAGIQSL	9	Unmodified	_SENAGIQSL_					0	0	0		nc|ENSG00000039560|Q9P0K7-4|RAI14;nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	MULTI-SECPEP	A375_MHC_IP_R2	2	460.1299133300781	2	459.729989	917.445425	-0.53551	-0.00024619	0.32248	0.00014825	-0.21303	-9.7936E-05	459.73011303169744	50.532	0.6087	51.286	51.006	51.615	0.75406					29	11	3	0	0	0	0.010955	1	18991	18991		133.05	22.377	1	5826300			47406	1160	34447	34726	46351	46351					-0.01659986241520528
SENDMRFVY	9	Unmodified	_SENDMRFVY_					0	0	0		ENSG00000164219|ENST00000419445|PGGT1B;nc|ENSG00000164219|P53609-2|PGGT1B;ENST00000296642.4_1_5:114552647-114588833:-|nuORF	ENSG00000164219|ENST00000419445|PGGT1B	ENSG00000164219|ENST00000419445|PGGT1B	MULTI-SECPEP	A375_MHC_IP_R2	2	581.1552734375	2	580.755681	1159.49681	-0.49978	-0.00029025	0.10893	6.3262E-05	-0.39085	-0.00022699	580.7556519323065	62.134	0.50822	62.877	62.622	63.13	0.74263					15	9	2	0	0	0	0.11849	1	23565	23565		61.602	43.456	1	2252000			47407	6803	34448	34727	46352	46352					-0.07655985539122412
SENDTYFKKY	10	Unmodified	_SENDTYFKKY_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	A375_MHC_IP_R1	1	432.6028747558594	3	432.203187	1293.58773	-0.51328	-0.00022184	0.29161	0.00012603	-0.22167	-9.5807E-05	432.2032472321709	29.098	0.45786	29.098	28.895	29.353	0					22	8	4	0	0	0	0.1298	1	9056	9056		43.477	27.34	1	6628100			47408	1262	34449	34728	46353	46353					-0.04731818289974399
SENDTYFKKY	10	Unmodified	_SENDTYFKKY_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	A375_MHC_IP_R2	2	432.6028747558594	3	432.203187	1293.58773	-0.68097	-0.00029432	0.075807	3.2764E-05	-0.60516	-0.00026155	432.20317936528147	28.407	0.35446	29.086	28.909	29.263	0.67857					15	6	3	0	0	0	0.069651	1	9833	9833		53.47	39.935	1	7980400			47409	1262	34449	34728	46354	46354					-0.04731818289974399
SENDVIRLI	9	Unmodified	_SENDVIRLI_					0	0	0		ENSG00000081320|ENST00000263955|STK17B;STK17B|p.M129I|1|0.32|ENSG00000081320|chr2:196146004-196146004|C/A|missense_variant	ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	MULTI-SECPEP	A375_MHC_IP_R1	1	529.134765625	2	529.795663	1057.57677	-0.76409	-0.00040481	-0.04563	-2.4175E-05	-0.80971	-0.00042898	529.7957036528768	84.473	1.1707	84.473	84.191	85.362	0					28	22	2	0	0	0	0.30133	1	30941	30941		43.982	22.445	1	2669700			47410	1736	34450	34729	46355	46355					0.05028824126384279
SENDVIRLI	9	Unmodified	_SENDVIRLI_					0	0	0		ENSG00000081320|ENST00000263955|STK17B;STK17B|p.M129I|1|0.32|ENSG00000081320|chr2:196146004-196146004|C/A|missense_variant	ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	MULTI-SECPEP	A375_MHC_IP_R2	2	530.1954345703125	2	529.795663	1057.57677	-0.53653	-0.00028425	-0.3373	-0.0001787	-0.87383	-0.00046295	529.7954961390645	83.592	0.61443	84.331	84.049	84.663	0.73962					18	11	2	0	0	0	0.053555	1	31773	31773		90.135	54.008	1	2731100			47411	1736	34450	34729	46356	46356					0.05028824126384279
SENESNIRY	9	Unmodified	_SENESNIRY_					0	0	0		nc|ENSG00000157404|P10721-2|KIT;ENSG00000157404|ENST00000288135|KIT;KIT|p.P363S|1|0.45|ENSG00000157404|chr4:54707259-54707259|C/T|missense_variant	nc|ENSG00000157404|P10721-2|KIT	nc|ENSG00000157404|P10721-2|KIT	MSMS	A375_MHC_IP_R2	2	556.1981201171875	2	556.25436	1110.49417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.734	1	30.433	29.933	30.933	0.69872								0	0	0	0.14767	1	10406	10406		25.399	0	1				47412	6241	34451	34730	46357	46357					-0.05666117672421933
SENFIKIY	8	Unmodified	_SENFIKIY_					0	0	0			REV__CYP4F2|p.M164I|1|0.54|ENSG00000186115|chr19:15892342-15892342|C/T|missense_variant	REV__CYP4F2|p.M164I|1|0.54|ENSG00000186115|chr19:15892342-15892342|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	506.69610595703125	2	507.26875	1012.52295	-0.44283	-0.00022464	-0.36992	-0.00018765	-0.81276	-0.00041229	507.26849422247136	64.644	0.8632	64.644	64.292	65.156	0					34	16	3	0	0	0	0.69583	1	23430	23430		36.044	0	1	4182200	+		47413	15957	34452	34731	46358	46358					0.017186516946594566
SENFIQPPLP	10	Unmodified	_SENFIQPPLP_					0	0	0			REV__ENST00000481106.5_1_X:80458072-80552723:+|nuORF	REV__ENST00000481106.5_1_X:80458072-80552723:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	571.3493041992188	2	571.298039	1140.58152	-0.18869	-0.0001078	0.27414	0.00015661	0.085448	4.8816E-05	571.7997047042923	62.276	0.61425	62.276	61.994	62.609	0					21	11	3	0	0	0	0.63639	1	22574	22574		18.146	3.3081	1	2798000	+		47414	18593	34453	34732	46359	46359					0.01685708269155839
SENFSAAW	8	Unmodified	_SENFSAAW_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MSMS	A375_MHC_IP_R2	2	456.1174011230469	2	456.198325	910.382096	-0.77268	-0.00035249	0.71045	0.0003241	-0.062231	-2.839E-05	456.1986445880762	36.778	0.2552	37.549	37.41	37.665	0.7709					8	4	2	0	0	0	0.77123	1	13414	13414		14.582	2.0501	1	1825600			47415	3101	34454	34733	46360	46360					-0.07667926958765747
SENGEKIFL	9	Unmodified	_SENGEKIFL_					0	0	0		tr|U7SZK3|U7SZK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00782PE=4SV=1	tr|U7SZK3|U7SZK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00782PE=4SV=1	tr|U7SZK3|U7SZK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00782PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1970825195312	2	518.769114	1035.52368	-0.99389	-0.0005156	-0.082616	-4.2859E-05	-1.0765	-0.00055846	518.7690488194309	58.316	0.86212	59.065	58.679	59.542	0.74894					50	16	4	0	0	0	0.1277	1	21989	21989		46.021	0	1	49617000			47416	29865	34455	34734	46361	46361					0.007334463437018712
SENGTNFRF	9	Unmodified	_SENGTNFRF_					0	0	0		ENSG00000103449|ENST00000251020|SALL1;nc|ENSG00000103449|Q9NSC2-2|SALL1;SALL1|p.S1302G|1|0.21|ENSG00000103449|chr16:51137183-51137183|T/C|missense_variant	ENSG00000103449|ENST00000251020|SALL1	ENSG00000103449|ENST00000251020|SALL1	MULTI-MSMS	A375_MHC_IP_R1	1	536.6460571289062	2	536.246338	1070.47812	-0.42283	-0.00022674	0.70719	0.00037923	0.28436	0.00015249	536.2462224492708	48.122	0.65749	48.122	47.768	48.426	0					44	12	5	0	0	0	0.0091377	1	16913	16913		121.53	77.676	1	24699000			47417	2452	34456	34735	46362	46362					-0.054297791186627364
SENGTNFRF	9	Unmodified	_SENGTNFRF_					0	0	0		ENSG00000103449|ENST00000251020|SALL1;nc|ENSG00000103449|Q9NSC2-2|SALL1;SALL1|p.S1302G|1|0.21|ENSG00000103449|chr16:51137183-51137183|T/C|missense_variant	ENSG00000103449|ENST00000251020|SALL1	ENSG00000103449|ENST00000251020|SALL1	MULTI-MSMS	A375_MHC_IP_R2	2	536.6463012695312	2	536.246338	1070.47812	-0.68747	-0.00036866	0.97568	0.0005232	0.2882	0.00015455	536.2463730023456	47.317	0.71381	48.078	47.715	48.429	0.76128					40	13	4	0	0	0	0.0097279	1	17691	17691		133.05	80.784	1	25172000			47418	2452	34456	34735	46363	46363					-0.054297791186627364
SENGVSKDVW	10	Unmodified	_SENGVSKDVW_					0	0	0		ENSG00000171617|ENST00000302351|ENC1;nc|ENSG00000171617|O14682-2|ENC1;ENSG00000183655|ENST00000337975|KLHL25	ENSG00000171617|ENST00000302351|ENC1;ENSG00000183655|ENST00000337975|KLHL25	ENSG00000171617|ENST00000302351|ENC1	MULTI-SECPEP	A375_MHC_IP_R1	1	561.1671142578125	2	560.767103	1119.51965	-0.14703	-8.2448E-05	0.4684	0.00026266	0.32138	0.00018022	560.7673453712997	39.041	0.61064	39.041	38.73	39.34	0					18	11	2	0	0	0	0.39465	1	13317	13317		49.742	24.343	1	4440400			47419	7622;8515	34457	34736	46364	46364					-0.03532643149992509
SENGVSKDVW	10	Unmodified	_SENGVSKDVW_					0	0	0		ENSG00000171617|ENST00000302351|ENC1;nc|ENSG00000171617|O14682-2|ENC1;ENSG00000183655|ENST00000337975|KLHL25	ENSG00000171617|ENST00000302351|ENC1;ENSG00000183655|ENST00000337975|KLHL25	ENSG00000171617|ENST00000302351|ENC1	MULTI-MSMS	A375_MHC_IP_R2	2	561.1671142578125	2	560.767103	1119.51965	-0.9483	-0.00053178	0.65369	0.00036657	-0.29461	-0.00016521	560.7674808361063	38.211	1.0753	38.986	38.175	39.25	0.77451					22	11	3	0	0	0	0.37567	1	14093	14093		35.612	11.592	1	4344500			47420	7622;8515	34457	34736	46365	46365					-0.03532643149992509
SENIEVKEG	9	Unmodified	_SENIEVKEG_					0	0	0		ENSG00000111671|ENST00000524270|SPSB2;nc|ENSG00000111671|Q99619-2|SPSB2	ENSG00000111671|ENST00000524270|SPSB2	ENSG00000111671|ENST00000524270|SPSB2	MULTI-SECPEP	A375_MHC_IP_R1	1	501.9623107910156	2	502.748379	1003.4822	-0.33211	-0.00016697	1.7457	0.00087764	1.4136	0.00071068	502.7492296231172	20.171	0.20202	20.171	20.03	20.232	0					5	3	2	0	0	0	0.78348	1	5097	5097		4.3292	0	1	629920			47421	3013	34458	34737	46366	46366					-0.019397344156004692
SENISWQTSE	10	Unmodified	_SENISWQTSE_					0	0	0		CCR6|p.R358W|1|0.07|ENSG00000112486|chr6:167137302-167137302|C/T|missense_variant	CCR6|p.R358W|1|0.07|ENSG00000112486|chr6:167137302-167137302|C/T|missense_variant	CCR6|p.R358W|1|0.07|ENSG00000112486|chr6:167137302-167137302|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	590.1563110351562	2	590.759475	1179.5044	-0.36331	-0.00021463	-0.58394	-0.00034497	-0.94724	-0.00055959	590.7592779726693	25.434	0.25612	25.434	25.255	25.511	0					5	4	2	0	0	0	0.8528	1	7424	7424		16.149	6.766	1	1689500			47422	326	34459	34738	46367	46367					-0.0781755473785779
SENKDLYEY	9	Unmodified	_SENKDLYEY_					0	0	0		nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	MULTI-SECPEP	A375_MHC_IP_R1	1	580.1986694335938	2	580.758943	1159.50333	-0.30846	-0.00017914	0.48884	0.0002839	0.18037	0.00010475	580.7585621300742	36.28	0.45618	36.28	36.033	36.489	0					20	8	4	0	0	0	0.54812	1	12137	12137		31.268	13.133	1	2262100			47423	6585	34460	34739	46368	46368					-0.07003769106745494
SENKDLYEY	9	Unmodified	_SENKDLYEY_					0	0	0		nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	MULTI-MSMS	A375_MHC_IP_R2	2	581.158935546875	2	580.758943	1159.50333	-0.53007	-0.00030784	0.13477	7.827E-05	-0.3953	-0.00022957	580.759078144711	35.591	0.50616	36.354	36.132	36.638	0.76338					21	9	4	0	0	0	0.11715	1	12931	12931		47.594	17.754	1	2679500			47424	6585	34460	34739	46369	46369					-0.07003769106745494
SENKIVGIGY	10	Unmodified	_SENKIVGIGY_					0	0	0		nc|ENSG00000129187|P32321-2|DCTD;ENSG00000129187|ENST00000438320|DCTD;ENST00000513383.5_1_4:183832630-183836685:-|nuORF	nc|ENSG00000129187|P32321-2|DCTD	nc|ENSG00000129187|P32321-2|DCTD	MULTI-SECPEP	A375_MHC_IP_R1	1	540.6890258789062	2	540.290214	1078.56587	-0.52282	-0.00028247	-0.44505	-0.00024045	-0.96787	-0.00052293	540.2898951460478	54.389	0.86134	54.389	54.063	54.924	0					41	16	3	0	0	0	0.20175	1	19394	19394		70.332	24.311	1	17229000			47425	4179	34461	34740	46370	46370					0.02973421752108152
SENKIVGIGY	10	Unmodified	_SENKIVGIGY_					0	0	0		nc|ENSG00000129187|P32321-2|DCTD;ENSG00000129187|ENST00000438320|DCTD;ENST00000513383.5_1_4:183832630-183836685:-|nuORF	nc|ENSG00000129187|P32321-2|DCTD	nc|ENSG00000129187|P32321-2|DCTD	MULTI-MSMS	A375_MHC_IP_R2	2	540.1860961914062	2	540.290214	1078.56587	-1.332	-0.00071969	-0.25487	-0.00013771	-1.5869	-0.0008574	540.2899598917994	53.551	1.2779	54.302	53.638	54.916	0.75105					41	17	3	0	0	0	0.046805	1	20188	20188		76.825	34.985	1	14339000			47426	4179	34461	34740	46371	46371					0.02973421752108152
SENKPKAKI	9	Unmodified	_SENKPKAKI_					0	0	0			REV__VWA3B|p.E429K|1|0.47|ENSG00000168658|chr2:98181186-98181186|G/A|missense_variant	REV__VWA3B|p.E429K|1|0.47|ENSG00000168658|chr2:98181186-98181186|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	508.096435546875	2	507.800749	1013.58694	-0.30243	-0.00015357	-0.097695	-4.9609E-05	-0.40012	-0.00020318	507.80066016983864	35.155	0.61039	35.155	34.912	35.522	0					32	11	4	0	0	0	0.58271	1	11580	11580		20.454	0	1	24728000	+		47427	28989	34462	34741	46372	46372					0.08069431851606623
SENLIREIAL	10	Unmodified	_SENLIREIAL_					0	0	0		ENSG00000196772|ENST00000641093|OR14A16	ENSG00000196772|ENST00000641093|OR14A16	ENSG00000196772|ENST00000641093|OR14A16	MULTI-SECPEP	A375_MHC_IP_R1	1	579.1686401367188	2	579.32987	1156.64519	-0.2887	-0.00016725	0.61793	0.00035798	0.32922	0.00019073	579.831650595149	27.26	0.4048	27.26	27.078	27.482	0					13	7	2	0	0	0	0.72086	1	8305	8305		24.021	0	1	2810600			47428	9082	34463	34742	46373	46373					0.07313068706253034
SENLLGKQF	9	Unmodified	_SENLLGKQF_					0	0	0		MKI67|p.T2594Rfs*26|1|0.26|ENSG00000148773|chr10:128104058-128104059|TG/-|frameshift_variant;nc|ENSG00000148773|P46013-2|MKI67;ENSG00000148773|ENST00000368654|MKI67	MKI67|p.T2594Rfs*26|1|0.26|ENSG00000148773|chr10:128104058-128104059|TG/-|frameshift_variant	MKI67|p.T2594Rfs*26|1|0.26|ENSG00000148773|chr10:128104058-128104059|TG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	518.6591186523438	2	518.277106	1034.53966	-0.56917	-0.00029499	0.29007	0.00015034	-0.27909	-0.00014465	518.2772702189546	58.203	0.96398	58.203	57.822	58.786	0					53	18	4	0	0	0	0.004037	1	20937	20937		152.89	97.383	1	52246000			47429	5761	34464	34743	46374	46374					0.023771525806068894
SENLLGKQF	9	Unmodified	_SENLLGKQF_					0	0	0		MKI67|p.T2594Rfs*26|1|0.26|ENSG00000148773|chr10:128104058-128104059|TG/-|frameshift_variant;nc|ENSG00000148773|P46013-2|MKI67;ENSG00000148773|ENST00000368654|MKI67	MKI67|p.T2594Rfs*26|1|0.26|ENSG00000148773|chr10:128104058-128104059|TG/-|frameshift_variant	MKI67|p.T2594Rfs*26|1|0.26|ENSG00000148773|chr10:128104058-128104059|TG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1422119140625	2	518.277106	1034.53966	-1.0663	-0.00055262	0.07791	4.0379E-05	-0.98836	-0.00051224	518.2771596363324	57.346	1.1181	58.095	57.661	58.779	0.74894					60	21	4	0	0	0	4.1611E-09	1	21728	21728		193.29	120.33	1	53642000			47430	5761	34464	34743	46375	46375					0.023771525806068894
SENNFGNY	8	Unmodified	_SENNFGNY_					0	0	0		NCAM1|p.D483N|1|0.44|ENSG00000149294|chr11:113232739-113232739|G/A|missense_variant	NCAM1|p.D483N|1|0.44|ENSG00000149294|chr11:113232739-113232739|G/A|missense_variant	NCAM1|p.D483N|1|0.44|ENSG00000149294|chr11:113232739-113232739|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	472.13055419921875	2	472.690864	943.367175	-0.61764	-0.00029195	0.016228	7.6709E-06	-0.60141	-0.00028428	472.69081022093064	68.54	0.5586	68.54	68.159	68.717	0					15	10	2	0	0	0	0.972	1	24773	24773		9.3474	6.77	1	1727600			47431	14979	34465	34744	46376	46376					-0.10677418826753637
SENNIQTIF	9	Unmodified	_SENNIQTIF_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	A375_MHC_IP_R1	1	533.7081909179688	2	533.264196	1064.51384	-0.53517	-0.00028539	0.42062	0.0002243	-0.11455	-6.1088E-05	533.2642040829771	88.988	0.9652	88.988	88.307	89.272	0					50	18	4	0	0	0	0.0099105	1	32628	32628		118.89	33.253	1	20161000			47432	5837	34466	34745	46377	46377					-0.015837416616705013
SENNIQTIF	9	Unmodified	_SENNIQTIF_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	A375_MHC_IP_R2	2	533.6646728515625	2	533.264196	1064.51384	-0.6737	-0.00035926	0.090568	4.8297E-05	-0.58313	-0.00031096	533.2641882359017	88.183	0.76055	88.915	88.57	89.331	0.7318					47	14	4	0	0	0	0.0099105	1	33496	33496		118.89	37.005	1	20773000			47433	5837	34466	34745	46378	46378					-0.015837416616705013
SENNLEWRVIN	11	Unmodified	_SENNLEWRVIN_					0	0	0			REV__tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1	REV__tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1	MSMS	A375_MHC_IP_R2	2	687.6942138671875	2	687.34404	1372.67353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.704	1	66.442	65.942	66.942	0.73811								0	0	0	0.16147	1	24910	24910		18.373	10.218	1		+		47434	28865	34467	34746	46379	46379					0.0020976661553504528
SENNRIFTL	9	Unmodified	_SENNRIFTL_					0	0	0		nc|ENSG00000156110|P55263-2|ADK;ENSG00000156110|ENST00000539909|ADK;nc|ENSG00000156110|P55263-4|ADK	nc|ENSG00000156110|P55263-2|ADK	nc|ENSG00000156110|P55263-2|ADK	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6849975585938	2	547.285463	1092.55637	-0.94383	-0.00051654	0.26219	0.0001435	-0.68164	-0.00037305	547.285577393713	67.991	0.55514	67.991	67.704	68.26	0					34	10	4	0	0	0	0.030244	1	24617	24617		96.936	36.862	1	8834600			47435	6174	34468	34747	46380	46380					0.01379653466574382
SENPAKRLY	9	Unmodified	_SENPAKRLY_					0	0	0		nc|ENSG00000071462|O43709-2|BUD23;ENST00000463307.5_1_7:73097949-73107126:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23;ENST00000432522.5_1_7:73101195-73108381:+|nuORF;ENST00000496153.5_1_7:73097949-73108381:+|nuORF	nc|ENSG00000071462|O43709-2|BUD23	nc|ENSG00000071462|O43709-2|BUD23	MULTI-MSMS	A375_MHC_IP_R1	1	360.2610168457031	3	359.861096	1076.56146	-0.12332	-4.4377E-05	-0.44094	-0.00015868	-0.56426	-0.00020305	359.86094727666006	23.921	0.65987	23.921	23.737	24.397	0					32	12	4	0	0	0	0.0097266	1	6659	6659		90.135	63.867	1	27941000			47436	1511	34469	34748	46381	46381					0.026239573292059504
SENPAKRLY	9	Unmodified	_SENPAKRLY_					0	0	0		nc|ENSG00000071462|O43709-2|BUD23;ENST00000463307.5_1_7:73097949-73107126:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23;ENST00000432522.5_1_7:73101195-73108381:+|nuORF;ENST00000496153.5_1_7:73097949-73108381:+|nuORF	nc|ENSG00000071462|O43709-2|BUD23	nc|ENSG00000071462|O43709-2|BUD23	MULTI-SECPEP	A375_MHC_IP_R1	1	539.6876220703125	2	539.288005	1076.56146	-0.90234	-0.00048662	-0.06881	-3.7108E-05	-0.97115	-0.00052373	539.2878846565211	23.948	0.76188	23.948	23.635	24.397	0					23	14	2	0	0	0	0.11711	1	6675	6675		60.074	33.19	1	14768000			47437	1511	34469	34748	46382	46382					0.026239573292059504
SENPAKRLY	9	Unmodified	_SENPAKRLY_					0	0	0		nc|ENSG00000071462|O43709-2|BUD23;ENST00000463307.5_1_7:73097949-73107126:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23;ENST00000432522.5_1_7:73101195-73108381:+|nuORF;ENST00000496153.5_1_7:73097949-73108381:+|nuORF	nc|ENSG00000071462|O43709-2|BUD23	nc|ENSG00000071462|O43709-2|BUD23	MULTI-SECPEP	A375_MHC_IP_R2	2	359.5985107421875	3	359.861096	1076.56146	-0.464	-0.00016697	-0.28295	-0.00010182	-0.74695	-0.0002688	359.86095621449897	23.765	0.45942	24.395	24.18	24.64	0.63015					13	8	2	0	0	0	0.58271	1	7696	7696		19.362	4.1135	1	4329800			47438	1511	34469	34748	46383	46383					0.026239573292059504
SENPAKRLY	9	Unmodified	_SENPAKRLY_					0	0	0		nc|ENSG00000071462|O43709-2|BUD23;ENST00000463307.5_1_7:73097949-73107126:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23;ENST00000432522.5_1_7:73101195-73108381:+|nuORF;ENST00000496153.5_1_7:73097949-73108381:+|nuORF	nc|ENSG00000071462|O43709-2|BUD23	nc|ENSG00000071462|O43709-2|BUD23	MULTI-SECPEP	A375_MHC_IP_R2	2	360.2607727050781	3	359.861096	1076.56146	-0.52507	-0.00018895	-0.17574	-6.3242E-05	-0.70081	-0.00025219	359.8609955393247	23.221	0.50859	23.851	23.521	24.029	0.63014					35	9	5	0	0	0	0.16676	1	7403	7403		45.74	20.749	1	20923000			47439	1511	34469	34748	46384	46384					0.026239573292059504
SENPAKRLY	9	Unmodified	_SENPAKRLY_					0	0	0		nc|ENSG00000071462|O43709-2|BUD23;ENST00000463307.5_1_7:73097949-73107126:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23;ENST00000432522.5_1_7:73101195-73108381:+|nuORF;ENST00000496153.5_1_7:73097949-73108381:+|nuORF	nc|ENSG00000071462|O43709-2|BUD23	nc|ENSG00000071462|O43709-2|BUD23	MULTI-SECPEP	A375_MHC_IP_R2	2	539.6878051757812	2	539.288005	1076.56146	-1.1792	-0.00063595	-0.3563	-0.00019215	-1.5355	-0.0008281	539.2878352474037	23.223	0.35595	23.853	23.623	23.979	0.63014					16	6	3	0	0	0	0.046478	1	7430	7430		82.529	48.128	1	10209000			47440	1511	34469	34748	46385	46385					0.026239573292059504
SENPANRYSF	10	Unmodified	_SENPANRYSF_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MSMS	A375_MHC_IP_R1	1	592.690673828125	2	592.770177	1183.5258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.657	1	39.657	39.157	40.157	0								0	0	0	0.14624	1	13574	13574		24.957	10.119	1				47441	8598	34470	34749	46386	46386					-0.05862124918508016
SENPANRYSF	10	Unmodified	_SENPANRYSF_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	A375_MHC_IP_R2	2	592.6908569335938	2	592.770177	1183.5258	-0.72345	-0.00042884	-0.8336	-0.00049414	-1.557	-0.00092297	592.769126236173	39.114	0.71223	39.888	39.607	40.32	0.77451					19	13	2	0	0	0	0.21149	1	14383	14383		48.073	24.283	1	4782500			47442	8598	34470	34749	46387	46387					-0.05862124918508016
SENPFREKKF	10	Unmodified	_SENPFREKKF_					0	0	0		ENSG00000186469|ENST00000556766|GNG2;ENSG00000168243|ENST00000391854|GNG4;ENSG00000162188|ENST00000294117|GNG3	ENSG00000186469|ENST00000556766|GNG2	ENSG00000186469|ENST00000556766|GNG2	MULTI-SECPEP	A375_MHC_IP_R1	1	428.2909240722656	3	427.891055	1280.65134	-0.45848	-0.00019618	0.25392	0.00010865	-0.20456	-8.7529E-05	427.89108870783787	26.399	0.71095	26.399	26.068	26.779	0					36	13	3	0	0	0	0.157	1	7801	7801		70.321	49.45	1	62930000			47443	6512	34471	34750	46388	46388					0.02223586937748223
SENPFREKKF	10	Unmodified	_SENPFREKKF_					0	0	0		ENSG00000186469|ENST00000556766|GNG2;ENSG00000168243|ENST00000391854|GNG4;ENSG00000162188|ENST00000294117|GNG3	ENSG00000186469|ENST00000556766|GNG2	ENSG00000186469|ENST00000556766|GNG2	MULTI-SECPEP	A375_MHC_IP_R2	2	428.291015625	3	427.891055	1280.65134	-0.64781	-0.00027719	0.31867	0.00013636	-0.32914	-0.00014084	427.89110514269294	25.712	0.86411	26.372	25.992	26.857	0.65992					43	16	3	0	0	0	0.084015	1	8568	8568		80.24	53.151	1	53465000			47444	6512	34471	34750	46389	46389					0.02223586937748223
SENPGQTHF	9	Unmodified	_SENPGQTHF_					0	0	0		ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	MULTI-SECPEP	A375_MHC_IP_R2	2	509.1246643066406	2	508.725238	1015.43592	-1.0467	-0.00053249	-0.37697	-0.00019178	-1.4237	-0.00072427	508.7252595931176	24.359	0.35523	25.002	24.806	25.161	0.64368					14	6	3	0	0	0	0.31606	1	7988	7988		39.95	13.066	1	7125500			47445	900	34472	34751	46390	46390					-0.07117754527041598
SENPMTETF	9	Unmodified	_SENPMTETF_					0	0	0		ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	MULTI-MSMS	A375_MHC_IP_R1	1	528.62109375	2	528.221139	1054.42773	-0.39715	-0.00020978	-0.35039	-0.00018508	-0.74754	-0.00039487	528.2210075375166	70.367	0.56295	70.367	70.085	70.648	0					18	10	2	0	0	0	0.12771	2	25560	25560;25593		45.7	15.475	1	2170200			47446	3110	34473	34752	46391;46392	46391					-0.09731069558688432
SENPMTETF	9	Unmodified	_SENPMTETF_					0	0	0		ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	MULTI-MSMS	A375_MHC_IP_R2	2	528.6206665039062	2	528.221139	1054.42773	-0.43421	-0.00022936	0.37893	0.00020016	-0.055275	-2.9197E-05	528.2214357692053	69.713	0.86331	70.447	70.031	70.895	0.73421					25	16	2	0	0	0	0.19747	1	26423	26423		38.176	16.429	1	2444800			47447	3110	34473	34752	46393	46393					-0.09731069558688432
SENPMTETF	9	Oxidation (M)	_SENPM(Oxidation (M))TETF_		SENPM(1)TETF		SENPM(70)TETF	0	0	1		ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	MULTI-MSMS	A375_MHC_IP_R2	2	536.6181640625	2	536.218597	1070.42264	-1.0272	-0.00055079	0.11485	6.1585E-05	-0.91232	-0.0004892	536.2185305031378	40.695	0.86387	41.47	41.031	41.895	0.77451					31	16	3	0	0	0	0.035419	1	15070	15070		70.332	39.695	1	3286800			47448	3110	34473	34753	46394	46394		146			-0.1097537342132
SENPMTETF	9	Oxidation (M)	_SENPM(Oxidation (M))TETF_					0	0	1		ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	MULTI-MATCH	A375_MHC_IP_R1	1		2	536.218597	1070.42264	-1.0533	-0.00056477	0.19936	0.0001069	-0.85389	-0.00045787	536.2186600259138	41.359	0.66238	41.359	41.063	41.725	0	-0.055569	4.2212E-05	NaN	70.332	33	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3002600			47449	3110	34473	34753				146			-0.1097537342132
SENPVLQNI	9	Unmodified	_SENPVLQNI_					0	0	0		ENST00000511334.1_1_5:64872783-64879053:+|nuORF;nc|ENSG00000113593|Q96BP3-2|PPWD1;ENSG00000113593|ENST00000261308|PPWD1	ENST00000511334.1_1_5:64872783-64879053:+|nuORF	ENST00000511334.1_1_5:64872783-64879053:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.6319274902344	2	507.266739	1012.51892	-0.37623	-0.00019085	-0.41217	-0.00020908	-0.7884	-0.00039993	507.26652693824906	77.546	1.5252	77.546	76.776	78.301	0					57	29	3	0	0	0	0.011066	1	28318	28318		137.42	30.237	1	9927400			47450	3164	34474	34754	46395	46395					0.013165622009523759
SENPVLQNI	9	Unmodified	_SENPVLQNI_					0	0	0		ENST00000511334.1_1_5:64872783-64879053:+|nuORF;nc|ENSG00000113593|Q96BP3-2|PPWD1;ENSG00000113593|ENST00000261308|PPWD1	ENST00000511334.1_1_5:64872783-64879053:+|nuORF	ENST00000511334.1_1_5:64872783-64879053:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	507.6664733886719	2	507.266739	1012.51892	-0.73687	-0.00037379	-0.15358	-7.7907E-05	-0.89045	-0.0004517	507.26675006195995	76.789	2.3372	77.529	76.538	78.876	0.74065					77	45	4	0	0	0	0.16595	1	29083	29083		53.404	23.563	1	11110000			47451	3164	34474	34754	46396	46396					0.013165622009523759
SENPVPLTV	9	Unmodified	_SENPVPLTV_					0	0	0		ENSG00000130764|ENST00000378251|LRRC47	ENSG00000130764|ENST00000378251|LRRC47	ENSG00000130764|ENST00000378251|LRRC47	MULTI-MSMS	A375_MHC_IP_R1	1	478.7806701660156	2	478.258382	954.502212	-0.52915	-0.00025307	0.37444	0.00017908	-0.1547	-7.3989E-05	478.25834778094736	80.031	0.45995	80.031	79.778	80.238	0					11	8	2	0	0	0	0.34064	1	29167	29167		27.629	6.0918	1	877850			47452	4280	34475	34755	46397	46397					0.02314061314996252
SENPVPLTV	9	Unmodified	_SENPVPLTV_					0	0	0		ENSG00000130764|ENST00000378251|LRRC47	ENSG00000130764|ENST00000378251|LRRC47	ENSG00000130764|ENST00000378251|LRRC47	MULTI-MATCH	A375_MHC_IP_R2	2		2	478.258382	954.502212	-0.44177	-0.00021128	-0.1877	-8.9768E-05	-0.62947	-0.00030105	478.25814566886476	79.242	0.45542	79.986	79.693	80.149	0.74473	-0.022121	-0.00027932	NaN	27.629	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1223300			47453	4280	34475	34755							0.02314061314996252
SENPWDNKAVY	11	Unmodified	_SENPWDNKAVY_					0	0	0		nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1;ENST00000529207.5_1_11:64898917-64899817:-|nuORF;ENST00000449943.5_1_11:64897669-64899838:-|nuORF	nc|ENSG00000162298|Q86TM6-2|SYVN1	nc|ENSG00000162298|Q86TM6-2|SYVN1	MULTI-SECPEP	A375_MHC_IP_R1	1	662.2041625976562	2	661.804217	1321.59388	-0.42286	-0.00027985	0.031254	2.0684E-05	-0.39161	-0.00025917	661.8039624522313	56.676	0.50784	56.676	56.397	56.905	0					18	9	3	0	0	0	0.49853	1	20337	20337		51.488	35.339	1	2731000			47454	6516	34476	34756	46398	46398					-0.05405300058487228
SENPWDNKAVY	11	Unmodified	_SENPWDNKAVY_					0	0	0		nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1;ENST00000529207.5_1_11:64898917-64899817:-|nuORF;ENST00000449943.5_1_11:64897669-64899838:-|nuORF	nc|ENSG00000162298|Q86TM6-2|SYVN1	nc|ENSG00000162298|Q86TM6-2|SYVN1	MULTI-SECPEP	A375_MHC_IP_R2	2	662.2033081054688	2	661.804217	1321.59388	-1.0898	-0.00072123	0.1309	8.6631E-05	-0.95889	-0.0006346	661.8042467277057	56.001	0.35841	56.751	56.642	57	0.75014					11	6	2	0	0	0	0.10688	1	21188	21188		67.081	43.06	1	1688000			47455	6516	34476	34756	46399	46399					-0.05405300058487228
SENQPWLLSN	10	Unmodified	_SENQPWLLSN_					0	0	0			REV__ENST00000552564.5_1_12:54794620-54797174:-|nuORF	REV__ENST00000552564.5_1_12:54794620-54797174:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	593.6690063476562	2	594.288202	1186.56185	-0.51914	-0.00030852	0.49202	0.0002924	-0.027118	-1.6116E-05	594.2883075432627	23.304	0.30686	23.304	23.176	23.483	0					10	5	3	0	0	0	0.92227	1	6400	6400		5.2969	0	1	4367000	+		47456	26058	34477	34757	46400	46400					-0.023966677416183302
SENQSLLRM	9	Unmodified	_SENQSLLRM_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;ENST00000313432.5_1_12:110783758-110784272:+|nuORF;nc|ENSG00000196296|O14983|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983-3|ATP2A1;nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3;ENST00000570773.5_1_17:3828718-3833746:-|nuORF;ENST00000571245.5_1_17:3831639-3833719:-|nuORF	nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000196296|O14983|ATP2A1;nc|ENSG00000074370|Q93084-4|ATP2A3	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-SECPEP	A375_MHC_IP_R1	1	539.2138671875	2	539.271498	1076.52844	-0.61165	-0.00032985	0.46434	0.0002504	-0.14731	-7.9442E-05	539.2716410397701	50.94	0.40517	50.94	50.713	51.119	0					13	7	2	0	0	0	0.48845	1	18039	18039		47.749	26.002	1	1784700			47457	7877;9024;1583	34478	34758	46401	46401					-0.006759927851589964
SENQVAHY	8	Unmodified	_SENQVAHY_					0	0	0		ENST00000498505.5_1_3:139069030-139069093:+|nuORF	ENST00000498505.5_1_3:139069030-139069093:+|nuORF	ENST00000498505.5_1_3:139069030-139069093:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	474.686767578125	2	474.214506	946.414459	-0.77462	-0.00036734	0.08136	3.8582E-05	-0.69326	-0.00032875	474.21449523326675	35.052	0.60678	35.815	35.576	36.183	0.76338					28	11	3	0	0	0	0.77603	1	12608	12608		9.3474	0.75416	1	13876000			47458	12763	34479	34759	46402	46402					-0.06089139555763268
SENSLPGNFF	10	Unmodified	_SENSLPGNFF_					0	0	0		ENST00000464074.6_1_10:16769067-16859404:-|nuORF;nc|ENSG00000148484|Q15404-2|RSU1;ENSG00000148484|ENST00000345264|RSU1	ENST00000464074.6_1_10:16769067-16859404:-|nuORF	ENST00000464074.6_1_10:16769067-16859404:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	556.9918212890625	2	556.256371	1110.49819	-0.31864	-0.00017724	-0.30433	-0.00016928	-0.62296	-0.00034653	556.2560756584671	107.41	0.86848	107.41	106.98	107.85	0					26	16	2	0	0	0	0.24808	1	39394	39394		63.961	24.011	1	1671800			47459	5747	34480	34760	46403	46403					-0.05264028178703484
SENSLPGNFF	10	Unmodified	_SENSLPGNFF_					0	0	0		ENST00000464074.6_1_10:16769067-16859404:-|nuORF;nc|ENSG00000148484|Q15404-2|RSU1;ENSG00000148484|ENST00000345264|RSU1	ENST00000464074.6_1_10:16769067-16859404:-|nuORF	ENST00000464074.6_1_10:16769067-16859404:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	556.6558227539062	2	556.256371	1110.49819	-0.83248	-0.00046307	-0.32408	-0.00018027	-1.1566	-0.00064334	556.255349966303	106.84	1.0666	107.6	106.94	108	0.75977					29	20	2	0	0	0	0.098574	1	40290	40290		63.961	20.102	1	1048500			47460	5747	34480	34760	46404	46404					-0.05264028178703484
SENSNRTCSM	10	Unmodified	_SENSNRTCSM_					0	0	0		nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC;nc|ENSG00000134982|P25054-2|APC;APC|p.T1556Nfs*3|1|0.92|ENSG00000134982|chr5:112840254-112840255|-/A|frameshift_variant	nc|ENSG00000134982|P25054-3|APC	nc|ENSG00000134982|P25054-3|APC	MULTI-MSMS	A375_MHC_IP_R1	1	565.6271362304688	2	564.724055	1127.43356	-0.70539	-0.00039835	0.24435	0.00013799	-0.46104	-0.00026036	565.2266631772957	30.325	1.7166	30.325	29.748	31.465	0					75	33	3	0	0	0	0.62155	2	9459	9459;10005		19.257	19.257	1	10887000			47461	4632	34481	34761	46405;46406	46405					-0.1250629431865491
SENTRPKFL	9	Unmodified	_SENTRPKFL_					0	0	0		ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6	ENSG00000163029|ENST00000448223|SMC6	ENSG00000163029|ENST00000448223|SMC6	MULTI-MSMS	A375_MHC_IP_R1	1	364.9330139160156	3	364.532979	1090.57711	0.13983	5.0972E-05	-0.36116	-0.00013166	-0.22134	-8.0684E-05	364.5328205057935	31.236	1.1162	31.236	30.908	32.024	0					40	21	3	0	0	0	0.31609	1	9983	9983		29.437	9.8112	1	2931200			47462	6624	34482	34762	46407	46407					0.03544243846226891
SENTRPKFL	9	Unmodified	_SENTRPKFL_					0	0	0		ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6	ENSG00000163029|ENST00000448223|SMC6	ENSG00000163029|ENST00000448223|SMC6	MULTI-MSMS	A375_MHC_IP_R2	2	364.93304443359375	3	364.532979	1090.57711	-0.026102	-9.5149E-06	-0.58746	-0.00021415	-0.61356	-0.00022366	364.53269424894916	30.377	0.65654	31.096	30.86	31.517	0.71857					26	12	3	0	0	0	0.26911	1	10671	10671		32.898	2.1943	1	4053300			47463	6624	34482	34762	46408	46408					0.03544243846226891
SENVVRRLI	9	Unmodified	_SENVVRRLI_					0	0	0			REV__ENSG00000183508|ENST00000369448|TENT5C	REV__ENSG00000183508|ENST00000369448|TENT5C	MULTI-SECPEP	A375_MHC_IP_R2	2	544.0819702148438	2	543.324922	1084.63529	-1.0181	-0.00055317	-0.33981	-0.00018463	-1.3579	-0.0007378	543.3247190226504	34.743	0.4548	35.507	35.273	35.727	0.76338					19	8	3	0	0	0	0.67483	1	12480	12480		10.074	0	1	10273000	+		47464	21761	34483	34763	46409	46409					0.09635925491511443
SENWEIIRE	9	Unmodified	_SENWEIIRE_					0	0	0		ENST00000503468.5_1_15:56126312-56207567:-|nuORF;ENSG00000069869|ENST00000435532|NEDD4;nc|ENSG00000069869|P46934-3|NEDD4;nc|ENSG00000069869|P46934-2|NEDD4;nc|ENSG00000069869|P46934|NEDD4	ENST00000503468.5_1_15:56126312-56207567:-|nuORF	ENST00000503468.5_1_15:56126312-56207567:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	393.28143310546875	3	392.527894	1174.56185	0.020954	8.2252E-06	0.07009	2.7512E-05	0.091045	3.5738E-05	392.5277457526614	40.075	0.25533	40.075	39.999	40.254	0					7	4	2	0	0	0	0.76106	1	13730	13730		13.615	2.1202	1	1522900			47465	1481	34484	34764	46410	46410					-0.018446677416022794
SENWEIIRE	9	Unmodified	_SENWEIIRE_					0	0	0		ENST00000503468.5_1_15:56126312-56207567:-|nuORF;ENSG00000069869|ENST00000435532|NEDD4;nc|ENSG00000069869|P46934-3|NEDD4;nc|ENSG00000069869|P46934-2|NEDD4;nc|ENSG00000069869|P46934|NEDD4	ENST00000503468.5_1_15:56126312-56207567:-|nuORF	ENST00000503468.5_1_15:56126312-56207567:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	392.527894	1174.56185	-0.29877	-0.00011728	-0.62052	-0.00024357	-0.91929	-0.00036085	392.5274459758206	39.337	0.35604	40.111	39.863	40.219	0.77451	0.018038	-0.00050813	NaN	13.615	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1276300			47466	1481	34484	34764							-0.018446677416022794
SEPAEPAPHE	10	Unmodified	_SEPAEPAPHE_					0	0	0			REV__ENSG00000165238|ENST00000427277|WNK2	REV__ENSG00000165238|ENST00000427277|WNK2	MULTI-MSMS	A375_MHC_IP_R2	2	532.6369018554688	2	532.238178	1062.4618	-0.98651	-0.00052506	-1.0429	-0.00055507	-2.0294	-0.0010801	532.7387916034643	71.734	0.70765	72.468	72.264	72.971	0.7342					24	13	3	0	0	0	0.55789	1	27265	27265		24.021	6.9077	1	1757800	+		47467	20564	34485	34765	46411	46411					-0.06692905075442468
SEPAFPHHHW	10	Unmodified	_SEPAFPHHHW_					0	0	0		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-MSMS	A375_MHC_IP_R1	1	416.1405029296875	3	415.524707	1243.55229	-0.10712	-4.451E-05	0.5627	0.00023382	0.45559	0.00018931	415.5246828160634	29.242	0.75898	29.242	28.694	29.453	0					32	14	3	0	0	0	0.22276	1	9014	9014		38.176	31.138	1	5207700			47468	2645	34486	34766	46412	46412					-0.05974391236486554
SEPAFPHHHW	10	Unmodified	_SEPAFPHHHW_					0	0	0		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-MSMS	A375_MHC_IP_R2	2	415.924560546875	3	415.524707	1243.55229	-0.42052	-0.00017474	0.76116	0.00031628	0.34064	0.00014154	415.85909510165595	28.423	0.50646	29.101	28.757	29.263	0.67857					23	9	3	0	0	0	0.22276	1	9755	9755		31.268	24.645	1	8016900			47469	2645	34486	34766	46413	46413					-0.05974391236486554
SEPAVIKRL	9	Unmodified	_SEPAVIKRL_					0	0	0		ENSG00000112339|ENST00000367837|HBS1L;HBS1L|p.I617F|1|0.2|ENSG00000112339|chr6:134969287-134969287|T/A|missense_variant;ENST00000527005.5_1_6:135286419-135303731:-|nuORF;nc|ENSG00000112339|Q9Y450-4|HBS1L	ENSG00000112339|ENST00000367837|HBS1L	ENSG00000112339|ENST00000367837|HBS1L	MULTI-SECPEP	A375_MHC_IP_R1	1	506.99053955078125	2	506.811116	1011.60768	-0.35957	-0.00018224	0.13072	6.6253E-05	-0.22885	-0.00011598	506.8109652915874	33.924	0.25367	33.924	33.798	34.052	0					6	4	2	0	0	0	0.74412	1	11161	11161		14.838	4.0143	1	1331500			47470	3078	34487	34767	46414	46414					0.10234022231293238
SEPAVIKRL	9	Unmodified	_SEPAVIKRL_					0	0	0		ENSG00000112339|ENST00000367837|HBS1L;HBS1L|p.I617F|1|0.2|ENSG00000112339|chr6:134969287-134969287|T/A|missense_variant;ENST00000527005.5_1_6:135286419-135303731:-|nuORF;nc|ENSG00000112339|Q9Y450-4|HBS1L	ENSG00000112339|ENST00000367837|HBS1L	ENSG00000112339|ENST00000367837|HBS1L	MULTI-SECPEP	A375_MHC_IP_R2	2	506.9273986816406	2	506.811116	1011.60768	-0.86488	-0.00043833	-0.39123	-0.00019828	-1.2561	-0.00063661	506.8110448663735	33.062	0.30641	33.814	33.635	33.942	0.75225					10	5	3	0	0	0	0.74412	1	11845	11845		14.838	4.0143	1	1698900			47471	3078	34487	34767	46415	46415					0.10234022231293238
SEPCGPPADAI	11	Unmodified	_SEPCGPPADAI_					0	0	0		ENSG00000260903|ENST00000562532|XKR7	ENSG00000260903|ENST00000562532|XKR7	ENSG00000260903|ENST00000562532|XKR7	MSMS	A375_MHC_IP_R2	2	528.702880859375	2	528.736957	1055.45936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.859	1	50.613	50.113	51.113	0.75406								0	0	0	0.15541	1	18740	18740		17.113	2.5312	1				47472	9933	34488	34768	46416	46416					-0.06615076804746423
SEPDFVAKF	9	Unmodified	_SEPDFVAKF_					0	0	0		ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	MULTI-MSMS	A375_MHC_IP_R1	1	520.65771484375	2	520.258382	1038.50221	-0.39256	-0.00020423	-0.35661	-0.00018553	-0.74917	-0.00038976	520.2582311905446	72.601	2.8375	72.601	71.968	74.805	0					223	55	7	0	0	0	0.0098183	2	26474	26474;26689		114.65	62.381	1	600190000			47473	8266	34489	34769	46417;46418	46417					-0.015499386850024166
SEPDFVAKF	9	Unmodified	_SEPDFVAKF_					0	0	0		ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	MULTI-MSMS	A375_MHC_IP_R2	2	520.6578979492188	2	520.258382	1038.50221	-0.92183	-0.00047959	-0.34821	-0.00018116	-1.27	-0.00066075	520.2582453984775	71.809	3.1998	72.543	72.061	75.261	0.73421					205	62	7	0	0	0	0.0090323	2	27345	27124;27345		99.799	47.531	1	705380000			47474	8266	34489	34769	46419;46420	46420					-0.015499386850024166
SEPDFVAKF	9	Unmodified	_SEPDFVAKF_					0	0	0		ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	MULTI-MSMS	A375_MHC_IP_R2	2	1039.9093017578125	1	1039.50949	1038.50221	-0.23543	-0.00024474	-0.39199	-0.00040747	-0.62742	-0.00065221	1039.5089735798442	71.807	0.96059	72.541	72.162	73.122	0.73421					51	18	4	0	0	0	0.082375	1	27447	27447		53.833	33.379	1	27699000			47475	8266	34489	34769	46421	46421					-0.015499386850024166
SEPDFVAKF	9	Unmodified	_SEPDFVAKF_					0	0	0		ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	MULTI-MATCH	A375_MHC_IP_R1	1		1	1039.50949	1038.50221	0.28134	0.00029245	-0.29397	-0.00030558	-0.01263	-1.3129E-05	1039.509022905303	72.599	0.91248	72.599	72.169	73.082	0	0.029148	4.8864E-05	NaN	53.833	54	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30801000			47476	8266	34489	34769							-0.015499386850024166
SEPDFVAKFY	10	Unmodified	_SEPDFVAKFY_					0	0	0		ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	MULTI-MSMS	A375_MHC_IP_R1	1	601.6627807617188	2	601.790047	1201.56554	-0.29568	-0.00017794	0.61866	0.0003723	0.32298	0.00019436	601.7900645019599	88.312	1.8304	88.312	87.798	89.628	0					142	35	7	0	0	0	0.0040472	4	32470	32470;32525;32603;32656		100.09	70.25	1	274090000			47477	8266	34490	34770	46422;46423;46424;46425	46422					-0.02717997967761221
SEPDFVAKFY	10	Unmodified	_SEPDFVAKFY_					0	0	0		ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	MULTI-MSMS	A375_MHC_IP_R1	1	601.83349609375	2	601.790047	1201.56554	-0.47535	-0.00028606	2.2528	0.0013557	1.7775	0.0010697	602.29262854735	90.097	0.86053	90.097	89.526	90.387	0					25	16	2	0	0	0	0.63639	1	33108	33108		18.146	1.2041	1	1360300			47478	8266	34490	34770	46426	46426					-0.02717997967761221
SEPDFVAKFY	10	Unmodified	_SEPDFVAKFY_					0	0	0		ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	MULTI-MSMS	A375_MHC_IP_R2	2	602.1901245117188	2	601.790047	1201.56554	-0.40086	-0.00024123	0.10869	6.5408E-05	-0.29217	-0.00017583	601.7901043313465	87.661	1.9727	88.392	87.913	89.886	0.7318					66	38	2	0	0	0	0.0062475	3	33224	33224;33368;33698		110.55	77.767	1	207280000			47479	8266	34490	34770	46427;46428;46429	46427					-0.02717997967761221
SEPEFQSTRV	10	Unmodified	_SEPEFQSTRV_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	A375_MHC_IP_R1	1	393.5877990722656	3	393.859532	1178.55677	-0.047703	-1.8788E-05	-1.1503	-0.00045306	-1.198	-0.00047185	393.85910910948587	28.205	0.75643	28.205	27.887	28.643	0					30	14	3	0	0	0	0.64017	1	8743	8743		17.863	3.0253	1	8357400			47480	9241	34491	34771	46430	46430					-0.025369716042632717
SEPERKEERE	10	Unmodified	_SEPERKEERE_					0	0	0			REV__ENST00000527742.1_1_12:57859296-57859723:+|nuORF	REV__ENST00000527742.1_1_12:57859296-57859723:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	430.9701232910156	3	430.209112	1287.60551	-0.55853	-0.00024028	3.583	0.0015415	3.0245	0.0013012	430.54528360769467	21.846	0.15387	22.465	22.387	22.541	0.61932					4	2	2	0	0	0	0.93961	1	6934	6934		1.5923	0	1	869010	+		47481	17650	34492	34772	46431	46431					-0.02679103035143271
SEPESIRKW	9	Unmodified	_SEPESIRKW_					0	0	0		ENSG00000122705|ENST00000345519|CLTA;nc|ENSG00000122705|P09496-4|CLTA;nc|ENSG00000122705|P09496-3|CLTA;nc|ENSG00000122705|P09496|CLTA	ENSG00000122705|ENST00000345519|CLTA	ENSG00000122705|ENST00000345519|CLTA	MULTI-MSMS	A375_MHC_IP_R1	1	378.2645263671875	3	377.864617	1130.57202	0.21901	8.2755E-05	-0.053202	-2.0103E-05	0.1658	6.2652E-05	377.8645968856353	28.164	1.2104	28.164	27.786	28.996	0					67	23	5	0	0	0	0.04699	1	8594	8594		65.474	39.476	1	240720000			47482	3802	34493	34773	46432	46432					0.011959399836086959
SEPESIRKW	9	Unmodified	_SEPESIRKW_					0	0	0		ENSG00000122705|ENST00000345519|CLTA;nc|ENSG00000122705|P09496-4|CLTA;nc|ENSG00000122705|P09496-3|CLTA;nc|ENSG00000122705|P09496|CLTA	ENSG00000122705|ENST00000345519|CLTA	ENSG00000122705|ENST00000345519|CLTA	MULTI-MSMS	A375_MHC_IP_R1	1	567.323486328125	2	566.293288	1130.57202	-0.49614	-0.00028096	0.23377	0.00013238	-0.26237	-0.00014858	566.2933528760617	28.206	1.1086	28.206	27.836	28.945	0					63	21	4	0	0	0	0.027556	1	8650	8650		74.2	47.932	1	169260000			47483	3802	34493	34773	46433	46433					0.011959399836086959
SEPESIRKW	9	Unmodified	_SEPESIRKW_					0	0	0		ENSG00000122705|ENST00000345519|CLTA;nc|ENSG00000122705|P09496-4|CLTA;nc|ENSG00000122705|P09496-3|CLTA;nc|ENSG00000122705|P09496|CLTA	ENSG00000122705|ENST00000345519|CLTA	ENSG00000122705|ENST00000345519|CLTA	MULTI-MSMS	A375_MHC_IP_R2	2	377.93646240234375	3	377.864617	1130.57202	0.18166	6.8644E-05	2.7979	0.0010572	2.9796	0.0011259	377.8645934669787	27.588	1.2169	28.266	27.843	29.06	0.67857					115	23	8	0	0	0	0.020087	2	9381	9339;9381		83.429	45.657	1	268510000			47484	3802	34493	34773	46434;46435	46435					0.011959399836086959
SEPESIRKW	9	Unmodified	_SEPESIRKW_					0	0	0		ENSG00000122705|ENST00000345519|CLTA;nc|ENSG00000122705|P09496-4|CLTA;nc|ENSG00000122705|P09496-3|CLTA;nc|ENSG00000122705|P09496|CLTA	ENSG00000122705|ENST00000345519|CLTA	ENSG00000122705|ENST00000345519|CLTA	MULTI-SECPEP	A375_MHC_IP_R2	2	566.6929321289062	2	566.293288	1130.57202	-0.35964	-0.00020366	-0.14865	-8.4181E-05	-0.5083	-0.00028784	566.2931731893988	27.546	0.86227	28.224	27.895	28.757	0.67857					51	16	4	0	0	0	0.016541	1	9354	9354		117.76	85.723	1	168550000			47485	3802	34493	34773	46436	46436					0.011959399836086959
SEPETARNLF	10	Unmodified	_SEPETARNLF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R1	1	582.6881713867188	2	582.288202	1162.56185	-0.34099	-0.00019855	-0.13253	-7.7168E-05	-0.47351	-0.00027572	582.2879957560136	28.198	0.75534	28.198	27.836	28.592	0					28	14	3	0	0	0	0.15002	1	8643	8643		66.457	12.624	1	10839000			47486	6151;14694	34494	34774	46437	46437					-0.012926677416317034
SEPETARNLF	10	Unmodified	_SEPETARNLF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R2	2	582.6875	2	582.288202	1162.56185	-0.32841	-0.00019123	-0.28889	-0.00016821	-0.61729	-0.00035944	582.287976496443	27.54	0.70953	28.219	27.895	28.604	0.67857					29	13	3	0	0	0	0.25355	1	9396	9396		43.772	3.8227	1	11447000			47487	6151;14694	34494	34774	46438	46438					-0.012926677416317034
SEPFGASV	8	Unmodified	_SEPFGASV_					0	0	0		ENST00000498171.5_1_22:20077477-20097628:+|nuORF;ENST00000495826.5_1_22:20074657-20094820:+|nuORF;ENSG00000128191|ENST00000351989|DGCR8	ENST00000498171.5_1_22:20077477-20097628:+|nuORF	ENST00000498171.5_1_22:20077477-20097628:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	397.61187744140625	2	397.189968	792.365384	-0.18077	-7.18E-05	-0.015642	-6.2129E-06	-0.19641	-7.8013E-05	397.1899070173469	32.96	0.30521	33.696	33.468	33.773	0.73692					9	5	2	0	0	0	0.8211	1	11801	11801		23.148	5.0134	1	965260			47488	4122	34495	34775	46439	46439					-0.03910427844698461
SEPFRQPADL	10	Unmodified	_SEPFRQPADL_					0	0	0		nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;ENST00000473691.1_1_X:79938122-79975072:-|nuORF;nc|ENSG00000165288|Q6RI45-5|BRWD3	nc|ENSG00000165288|Q6RI45-3|BRWD3	nc|ENSG00000165288|Q6RI45-3|BRWD3	MULTI-MSMS	A375_MHC_IP_R1	1	387.59619140625	3	387.196256	1158.56694	0.0018824	7.2886E-07	0.40581	0.00015713	0.40769	0.00015786	387.19629935810116	28.892	0.5579	28.892	28.694	29.252	0					18	10	2	0	0	0	0.70972	1	8991	8991		7.9454	0	1	2340800			47489	6937	34496	34776	46440	46440					-0.0060036387899344845
SEPFRQPADL	10	Unmodified	_SEPFRQPADL_					0	0	0		nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;ENST00000473691.1_1_X:79938122-79975072:-|nuORF;nc|ENSG00000165288|Q6RI45-5|BRWD3	nc|ENSG00000165288|Q6RI45-3|BRWD3	nc|ENSG00000165288|Q6RI45-3|BRWD3	MULTI-MSMS	A375_MHC_IP_R2	2	387.5960388183594	3	387.196256	1158.56694	-0.45015	-0.0001743	0.22219	8.6031E-05	-0.22796	-8.8266E-05	387.1962570202646	28.255	0.40624	28.934	28.757	29.163	0.67857					11	7	2	0	0	0	0.70442	1	9775	9775		10.315	0	1	2676700			47490	6937	34496	34776	46441	46441					-0.0060036387899344845
SEPFRQPADL	10	Unmodified	_SEPFRQPADL_					0	0	0		nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;ENST00000473691.1_1_X:79938122-79975072:-|nuORF;nc|ENSG00000165288|Q6RI45-5|BRWD3	nc|ENSG00000165288|Q6RI45-3|BRWD3	nc|ENSG00000165288|Q6RI45-3|BRWD3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	387.196256	1158.56694	-0.45015	-0.0001743	0.22219	8.6031E-05	-0.22796	-8.8266E-05	387.1962570202646	28.255	0.40624	28.934	28.757	29.163	0.67857	0.021259	-0.00012487	NaN	10.315	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2676700			47491	6937	34496	34776							-0.0060036387899344845
SEPHHVQGE	9	Unmodified	_SEPHHVQGE_					0	0	0			REV__ENST00000480230.5_1_2:241463300-241465350:-|nuORF	REV__ENST00000480230.5_1_2:241463300-241465350:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	510.9737548828125	2	510.230687	1018.44682	-0.77578	-0.00039583	-0.14373	-7.3337E-05	-0.91952	-0.00046917	510.2304545210534	30.824	0.40384	31.542	31.417	31.821	0.71857					11	7	2	0	0	0	0.76827	1	10886	10886		3.5965	0	1	1465400	+		47492	25244	34497	34777	46442	46442					-0.06166352152752097
SEPIFWWL	8	Unmodified	_SEPIFWWL_					0	0	0			REV__ENSG00000197208|ENST00000200652|SLC22A4	REV__ENSG00000197208|ENST00000200652|SLC22A4	MULTI-SECPEP	A375_MHC_IP_R1	1	539.3818969726562	2	539.273835	1076.53312	-0.70547	-0.00038044	-2.6304	-0.0014185	-3.3359	-0.0017989	539.7742800197796	58.272	0.253	58.272	58.177	58.43	0					7	4	2	0	0	0	0.94479	1	20905	20905		8.5933	0	1	748230	+		47493	22271	34498	34778	46443	46443					-0.002087405801148634
SEPKILTHY	9	Unmodified	_SEPKILTHY_					0	0	0		ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D	ENSG00000167548|ENST00000301067|KMT2D	ENSG00000167548|ENST00000301067|KMT2D	MULTI-SECPEP	A375_MHC_IP_R1	1	362.6206970214844	3	363.197596	1086.57096	0.17086	6.2054E-05	-0.8028	-0.00029158	-0.63195	-0.00022952	363.19717697069194	34.03	0.60715	34.03	33.798	34.405	0					17	11	2	0	0	0	0.37663	1	11229	11229		23.79	13.639	1	3045700			47494	7193	34499	34779	46444	46444					0.031137256147076187
SEPKILTHY	9	Unmodified	_SEPKILTHY_					0	0	0		ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D	ENSG00000167548|ENST00000301067|KMT2D	ENSG00000167548|ENST00000301067|KMT2D	MULTI-MSMS	A375_MHC_IP_R2	2	363.597412109375	3	363.197596	1086.57096	-0.35842	-0.00013018	-0.24828	-9.0175E-05	-0.6067	-0.00022035	363.19746573085735	33.278	0.61137	34.03	33.686	34.298	0.75225					19	11	2	0	0	0	0.38603	1	11931	11931		23.79	12.295	1	3880400			47495	7193	34499	34779	46445	46445					0.031137256147076187
SEPKILTHY	9	Unmodified	_SEPKILTHY_					0	0	0		ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D	ENSG00000167548|ENST00000301067|KMT2D	ENSG00000167548|ENST00000301067|KMT2D	MULTI-SECPEP	A375_MHC_IP_R2	2	544.1126098632812	2	544.292756	1086.57096	-1.079	-0.00058731	0.03252	1.77E-05	-1.0465	-0.00056961	544.2927751224577	33.295	0.35625	34.048	33.84	34.196	0.75225					13	6	3	0	0	0	0.57806	1	11913	11913		26.268	7.0112	1	2983400			47496	7193	34499	34779	46446	46446					0.031137256147076187
SEPKLDRY	8	Unmodified	_SEPKLDRY_					0	0	0			REV__ENST00000521687.5_1_7:27162261-27168026:+|nuORF	REV__ENST00000521687.5_1_7:27162261-27168026:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	504.66180419921875	2	504.261456	1006.50836	-0.66582	-0.00033575	-0.31082	-0.00015673	-0.97664	-0.00049248	504.26125828015427	45.703	0.50218	46.468	46.303	46.805	0.76518					22	9	3	0	0	0	0.68964	1	17085	17085		37.974	1.4678	1	4652000	+		47497	25719	34500	34780	46447	46447					0.005365795465081646
SEPLTLEQEY	10	Unmodified	_SEPLTLEQEY_					0	0	0		ENST00000582168.5_1_17:72769619-72771837:-|nuORF;ENST00000582993.5_1_17:72769619-72771837:-|nuORF;ENST00000582118.1_1_17:72769619-72771837:-|nuORF;ENST00000582359.5_1_17:72768918-72770027:-|nuORF;ENST00000583834.5_1_17:72768345-72771837:-|nuORF;ENST00000577428.5_1_17:72768529-72772472:-|nuORF;ENST00000585240.5_1_17:72768620-72771837:-|nuORF;ENST00000583689.5_1_17:72768918-72771837:-|nuORF;ENST00000578798.5_1_17:72768345-72772472:-|nuORF;nc|ENSG00000109065|Q9BTE0-2|NAT9;ENSG00000109065|ENST00000357814|NAT9	ENST00000582168.5_1_17:72769619-72771837:-|nuORF	ENST00000582168.5_1_17:72769619-72771837:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	604.717041015625	2	604.787701	1207.56085	-0.29631	-0.0001792	-0.40827	-0.00024692	-0.70458	-0.00042612	604.7871638941765	77.869	0.46102	77.869	77.537	77.998	0					13	8	2	0	0	0	0.79457	1	28370	28370		26.268	20.062	1	1042800			47498	2852	34501	34781	46448	46448					-0.03462926901170249
SEPLTLEQEY	10	Unmodified	_SEPLTLEQEY_					0	0	0		ENST00000582168.5_1_17:72769619-72771837:-|nuORF;ENST00000582993.5_1_17:72769619-72771837:-|nuORF;ENST00000582118.1_1_17:72769619-72771837:-|nuORF;ENST00000582359.5_1_17:72768918-72770027:-|nuORF;ENST00000583834.5_1_17:72768345-72771837:-|nuORF;ENST00000577428.5_1_17:72768529-72772472:-|nuORF;ENST00000585240.5_1_17:72768620-72771837:-|nuORF;ENST00000583689.5_1_17:72768918-72771837:-|nuORF;ENST00000578798.5_1_17:72768345-72772472:-|nuORF;nc|ENSG00000109065|Q9BTE0-2|NAT9;ENSG00000109065|ENST00000357814|NAT9	ENST00000582168.5_1_17:72769619-72771837:-|nuORF	ENST00000582168.5_1_17:72769619-72771837:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	605.1878662109375	2	604.787701	1207.56085	-0.44037	-0.00026633	-1.0347	-0.00062579	-1.4751	-0.00089212	604.7874369613706	77.059	0.5076	77.802	77.657	78.165	0.74293					14	9	3	0	0	0	0.20175	1	29283	29283		61.602	40.065	1	1112900			47499	2852	34501	34781	46449	46449					-0.03462926901170249
SEPNFSVAY	9	Unmodified	_SEPNFSVAY_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	A375_MHC_IP_R1	1	507.7323303222656	2	507.232364	1012.45018	-0.41362	-0.0002098	0.0062574	3.174E-06	-0.40736	-0.00020663	507.23230465001484	77.411	1.3241	77.411	76.622	77.946	0					58	25	3	0	0	0	0.14922	1	28078	28078		41.84	17.819	1	6863400			47500	3254	34502	34782	46450	46450					-0.055551020987536504
SEPNFSVAY	9	Unmodified	_SEPNFSVAY_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	507.232364	1012.45018	-0.73608	-0.00037336	0.040034	2.0307E-05	-0.69605	-0.00035306	507.23237584767196	76.676	1.37	77.417	76.893	78.263	0.74052	0.0030592	1.7346E-05	NaN	41.84	68	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5392800			47501	3254	34502	34782							-0.055551020987536504
SEPNPRPVF	9	Unmodified	_SEPNPRPVF_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-SECPEP	A375_MHC_IP_R2	2	522.169677734375	2	521.769448	1041.52434	-0.53835	-0.00028089	0.82543	0.00043068	0.28708	0.00014979	521.7695286731137	42.425	0.81562	43.197	42.656	43.472	0.7724					22	15	3	0	0	0	0.65246	1	15798	15798		15.847	7.937	1	3072300			47502	1806	34503	34783	46451	46451					0.005242857834218739
SEPNPRPVF	9	Unmodified	_SEPNPRPVF_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	521.769448	1041.52434	-0.31609	-0.00016493	-0.016885	-8.81E-06	-0.33297	-0.00017374	521.7694148130554	43.233	0.61056	43.233	42.891	43.502	0	0.017929	-0.00041622	NaN	15.847	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2627600			47503	1806	34503	34783							0.005242857834218739
SEPPRKLYEQ	10	Unmodified	_SEPPRKLYEQ_					0	0	0			REV__ENSG00000235272|ENST00000444122|RAMACL	REV__ENSG00000235272|ENST00000444122|RAMACL	MULTI-MSMS	A375_MHC_IP_R1	1	416.6194763183594	3	416.21906	1245.63535	0.26881	0.00011188	0.60558	0.00025205	0.87438	0.00036393	416.21943814914243	31.44	0.50723	31.44	31.211	31.718	0					21	9	3	0	0	0	0.70027	1	10097	10097		12.175	1.8595	1	2858000	+		47504	20937	34504	34784	46452	46452					0.0223588070086862
SEPPRKLYEQ	10	Unmodified	_SEPPRKLYEQ_					0	0	0			REV__ENSG00000235272|ENST00000444122|RAMACL	REV__ENSG00000235272|ENST00000444122|RAMACL	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	416.21906	1245.63535	0.26881	0.00011188	0.60558	0.00025205	0.87438	0.00036393	416.21943814914243	31.44	0.50723	31.44	31.211	31.718	0	0.014221	-1.4398E-06	NaN	12.175	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2858000	+		47505	20937	34504	34784							0.0223588070086862
SEPQRQEY	8	Unmodified	_SEPQRQEY_					0	0	0		nc|ENSG00000104055|O43548-2|TGM5;TGM5|p.K709Rfs*8|1|0.46|ENSG00000104055|chr15:43233228-43233228|T/-|frameshift_variant;ENSG00000104055|ENST00000220420|TGM5	nc|ENSG00000104055|O43548-2|TGM5	nc|ENSG00000104055|O43548-2|TGM5	MULTI-MSMS	A375_MHC_IP_R2	2	519.205078125	2	518.738345	1035.46214	-1.0195	-0.00052885	-1.4249	-0.00073915	-2.4444	-0.001268	518.7382689220403	34.159	3.4486	34.911	32.975	36.424	0.75225					158	67	4	0	0	0	0.75805	1	11673	11673		18.135	10.846	1	66591000			47506	2481	34505	34785	46453	46453					-0.05417485355565077
SEPRDSAVY	9	Unmodified	_SEPRDSAVY_					0	0	0		nc|ENSG00000276953|A0A0B4J2E0|TRBV12-4;nc|ENSG00000275158|A0A1B0GX78|TRBV12-5;nc|ENSG00000274752|P01733|TRBV12-3	nc|ENSG00000276953|A0A0B4J2E0|TRBV12-4	nc|ENSG00000276953|A0A0B4J2E0|TRBV12-4	MULTI-MSMS	A375_MHC_IP_R1	1	512.6907348632812	2	512.240721	1022.46689	-0.31775	-0.00016276	-0.8934	-0.00045763	-1.2111	-0.0006204	512.240589216397	54.332	0.45387	54.332	54.113	54.567	0					12	8	2	0	0	0	0.60101	1	19422	19422		14.838	0.25658	1	795510			47507	14939	34506	34786	46454	46454					-0.04344601212812904
SEPRSAWKL	9	Unmodified	_SEPRSAWKL_					0	0	0			REV__nc|ENSG00000165115|Q86VH2-3|KIF27	REV__nc|ENSG00000165115|Q86VH2-3|KIF27	MULTI-SECPEP	A375_MHC_IP_R1	1	358.9656677246094	3	358.529458	1072.56654	0.14983	5.3718E-05	-0.21549	-7.726E-05	-0.065664	-2.3542E-05	358.52897744691484	28.484	0.40506	28.484	28.238	28.643	0					9	7	2	0	0	0	0.76827	1	8821	8821		2.086	0	1	1375500	+		47508	20548	34507	34787	46455	46455					0.033162611917987306
SEPSAQLSY	9	Unmodified	_SEPSAQLSY_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	A375_MHC_IP_R1	1	491.1376037597656	2	491.229822	980.445091	0.14403	7.0751E-05	-0.14584	-7.1641E-05	-0.0018115	-8.8985E-07	491.22954092858896	48.925	1.3191	48.925	48.577	49.896	0					62	25	3	0	0	0	0.22528	2	17429	17395;17429		36.127	13.391	1	14160000			47509	4338	34508	34788	46456;46457	46457					-0.04591405961377859
SEPSAQLSY	9	Unmodified	_SEPSAQLSY_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	A375_MHC_IP_R2	2	491.629150390625	2	491.229822	980.445091	-0.52019	-0.00025553	0.18919	9.2936E-05	-0.331	-0.0001626	491.22975400733975	48.298	1.4172	49.055	48.678	50.096	0.75737					68	27	3	0	0	0	0.04447	1	18313	18313		66.457	30.33	1	17130000			47510	4338	34508	34788	46458	46458					-0.04591405961377859
SEPSEVRSY	9	Unmodified	_SEPSEVRSY_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R1	1	527.6455078125	2	527.246003	1052.47745	-0.77537	-0.00040881	0.12818	6.7584E-05	-0.64718	-0.00034122	527.245996059126	23.775	0.45743	23.775	23.533	23.991	0					26	8	4	0	0	0	0.012447	1	6588	6588		93.166	45.417	1	28455000			47511	14788	34509	34789	46459	46459					-0.046686185583666884
SEPSEVRSY	9	Unmodified	_SEPSEVRSY_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6453857421875	2	527.246003	1052.47745	-0.80895	-0.00042652	-0.13576	-7.1577E-05	-0.94471	-0.00049809	527.2457522211084	23.137	0.55967	23.767	23.47	24.029	0.63015					28	10	4	0	0	0	0.4465	1	7366	7366		38.176	17.761	1	18310000			47512	14788	34509	34789	46460	46460					-0.046686185583666884
SEPSQPRSIEF	11	Unmodified	_SEPSQPRSIEF_					0	0	0			REV__nc|ENSG00000143473|O95259-2|KCNH1	REV__nc|ENSG00000143473|O95259-2|KCNH1	MULTI-MSMS	A375_MHC_IP_R2	2	426.61041259765625	3	426.210453	1275.60953	-0.56564	-0.00024108	0.47434	0.00020217	-0.091306	-3.8916E-05	426.2105169733802	36.584	0.45772	37.355	37.106	37.564	0.7709					18	8	3	0	0	0	0.73135	1	13379	13379		6.2344	0.042509	1	2575300	+		47513	19359	34510	34790	46461	46461					-0.017250135414315082
SEPTEKHFF	9	Unmodified	_SEPTEKHFF_					0	0	0		ENSG00000213949|ENST00000282588|ITGA1	ENSG00000213949|ENST00000282588|ITGA1	ENSG00000213949|ENST00000282588|ITGA1	MULTI-MSMS	A375_MHC_IP_R1	1	374.91387939453125	3	374.513585	1120.51892	0.21698	8.1262E-05	0.68159	0.00025526	0.89857	0.00033653	374.51385014294436	33.033	0.65955	33.033	32.836	33.496	0					20	12	2	0	0	0	0.22528	1	10755	10755		27.223	14.351	1	5382900			47514	9592	34511	34791	46462	46462					-0.03651437799044288
SEPTEKHFF	9	Unmodified	_SEPTEKHFF_					0	0	0		ENSG00000213949|ENST00000282588|ITGA1	ENSG00000213949|ENST00000282588|ITGA1	ENSG00000213949|ENST00000282588|ITGA1	MULTI-MSMS	A375_MHC_IP_R1	1	561.66650390625	2	561.266739	1120.51892	-0.58656	-0.00032922	0.46666	0.00026192	-0.1199	-6.7297E-05	561.2668358924884	33.107	0.35399	33.107	32.887	33.241	0					12	6	2	0	0	0	0.047602	1	10780	10780		65.235	40.244	1	3535800			47515	9592	34511	34791	46463	46463					-0.03651437799044288
SEPTEKHFF	9	Unmodified	_SEPTEKHFF_					0	0	0		ENSG00000213949|ENST00000282588|ITGA1	ENSG00000213949|ENST00000282588|ITGA1	ENSG00000213949|ENST00000282588|ITGA1	MULTI-SECPEP	A375_MHC_IP_R2	2	374.91424560546875	3	374.513585	1120.51892	0.31446	0.00011777	0.36438	0.00013646	0.67884	0.00025423	374.5137400530872	32.284	0.56191	33.021	32.755	33.317	0.73691					18	10	2	0	0	0	0.60917	1	11468	11468		13.615	5.1706	1	6550500			47516	9592	34511	34791	46464	46464					-0.03651437799044288
SEPTEKHFF	9	Unmodified	_SEPTEKHFF_					0	0	0		ENSG00000213949|ENST00000282588|ITGA1	ENSG00000213949|ENST00000282588|ITGA1	ENSG00000213949|ENST00000282588|ITGA1	MULTI-SECPEP	A375_MHC_IP_R2	2	561.6666870117188	2	561.266739	1120.51892	-0.63683	-0.00035743	-0.27994	-0.00015712	-0.91677	-0.00051455	561.2665146079732	32.316	0.45913	33.053	32.806	33.265	0.73692					14	8	2	0	0	0	0.4261	1	11496	11496		30.637	14.789	1	3480900			47517	9592	34511	34791	46465	46465					-0.03651437799044288
SEPVGGTQQQF	11	Unmodified	_SEPVGGTQQQF_					0	0	0			REV__ENST00000397898.7_1_21:46226868-46228953:-|nuORF	REV__ENST00000397898.7_1_21:46226868-46228953:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	393.5877380371094	3	393.187649	1176.54112	-0.14439	-5.6772E-05	1.4594	0.0005738	1.315	0.00051703	393.1882385071762	27.586	0.65886	28.264	27.945	28.604	0.67857					21	12	2	0	0	0	0.65093	1	9414	9414		11.631	3.3449	1	10970000	+		47518	21844	34512	34792	46466	46466					-0.04009258121300263
SEPVGIYQGF	10	Unmodified	_SEPVGIYQGF_					0	0	0		ENSG00000163932|ENST00000330452|PRKCD;nc|ENSG00000163932|Q05655-2|PRKCD	ENSG00000163932|ENST00000330452|PRKCD	ENSG00000163932|ENST00000330452|PRKCD	MULTI-SECPEP	A375_MHC_IP_R1	1	549.1688232421875	2	548.769114	1095.52368	-0.36347	-0.00019946	-0.038384	-2.1064E-05	-0.40186	-0.00022053	548.7690069885398	93.088	1.0179	93.088	92.617	93.635	0					52	19	4	0	0	0	0.024081	1	34166	34166		110.67	86.654	1	14775000			47519	6746	34513	34793	46467	46467					-0.02026553656287433
SEPVGIYQGF	10	Unmodified	_SEPVGIYQGF_					0	0	0		ENSG00000163932|ENST00000330452|PRKCD;nc|ENSG00000163932|Q05655-2|PRKCD	ENSG00000163932|ENST00000330452|PRKCD	ENSG00000163932|ENST00000330452|PRKCD	MULTI-MSMS	A375_MHC_IP_R2	2	549.1685180664062	2	548.769114	1095.52368	-0.70684	-0.00038789	-0.036446	-2E-05	-0.74329	-0.00040789	548.7689746541861	92.545	1.0613	93.284	92.585	93.646	0.73901					54	20	4	0	0	0	0.00022086	1	35108	35108		152.41	116.29	1	13831000			47520	6746	34513	34793	46468	46468					-0.02026553656287433
SEPVNPGMHS	10	Unmodified	_SEPVNPGMHS_					0	0	0		ENSG00000147206|ENST00000395065|NXF3	ENSG00000147206|ENST00000395065|NXF3	ENSG00000147206|ENST00000395065|NXF3	MSMS	A375_MHC_IP_R2	2	527.6453857421875	2	527.734748	1053.45494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.047	1	23.677	23.177	24.177	0.63014								0	0	0	0.1524	1	7366	7366		13.042	0.51092	1				47521	5669	34514	34794	46469	46469					-0.06964541227625887
SEPVYASGVF	10	Unmodified	_SEPVYASGVF_					0	0	0			REV__ENSG00000168758|ENST00000305476|SEMA4C	REV__ENSG00000168758|ENST00000305476|SEMA4C	MULTI-MSMS	A375_MHC_IP_R2	2	528.6548461914062	2	528.25584	1054.49713	-0.79586	-0.00042042	-0.58377	-0.00030838	-1.3796	-0.0007288	528.2554597127232	71.807	0.70765	72.541	72.264	72.971	0.73421					20	13	2	0	0	0	0.62155	1	27276	27276		19.257	3.4098	1	2350200	+		47522	20882	34515	34795	46470	46470					-0.027942425476112476
SEPWAQLT	8	Unmodified	_SEPWAQLT_					0	0	0			REV__ENST00000268099.13_1_15:75136867-75137176:-|nuORF	REV__ENST00000268099.13_1_15:75136867-75137176:-|nuORF	MSMS	A375_MHC_IP_R2	2	466.17938232421875	2	466.229625	930.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.897	1	40.671	40.171	41.171	0.77451								0	0	0	0.16876	1	14752	14752		10.824	2.2306	1		+		47523	23264	34516	34796	46471	46471					-0.023307808905883576
SEQCRSPSYL	10	Unmodified	_SEQCRSPSYL_					0	0	0			REV__SUSD4|p.P447S|1|0.84|ENSG00000143502|chr1:223223354-223223354|G/A|missense_variant	REV__SUSD4|p.P447S|1|0.84|ENSG00000143502|chr1:223223354-223223354|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	585.1853637695312	2	585.266413	1168.51827	-0.59288	-0.00034699	-0.46196	-0.00027037	-1.0548	-0.00061736	585.2663204915198	72.61	0.96468	73.345	72.922	73.887	0.7354					33	18	2	0	0	0	0.69833	1	27722	27722		13.042	2.9685	1	1434300	+		47524	28062	34517	34797	46472	46472					-0.059246005103887
SEQEPQNYY	9	Unmodified	_SEQEPQNYY_					0	0	0			REV__ENST00000489998.5_1_1:157765891-157772050:-|nuORF	REV__ENST00000489998.5_1_1:157765891-157772050:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	579.227294921875	2	579.240918	1156.46728	-0.25304	-0.00014657	-0.66174	-0.0003833	-0.91478	-0.00052988	579.240521895403	77.108	0.66039	77.108	76.776	77.436	0					20	12	2	0	0	0	0.72507	1	28016	28016		4.756	0	1	1697900	+		47525	20375	34518	34798	46473	46473					-0.10469226283612443
SEQEQRACETP	11	Unmodified	_SEQEQRACETP_					0	0	0			REV__ENSG00000147485|ENST00000356297|PXDNL	REV__ENSG00000147485|ENST00000356297|PXDNL	MSMS	A375_MHC_IP_R2	2	639.071044921875	2	639.274966	1276.53538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.381	1	62.126	61.626	62.626	0.74503								0	0	0	0.16191	1	23264	23264		8.7454	2.0222	1		+		47526	19591	34519	34799	46474	46474					-0.09182724695256184
SEQETLQKY	9	Unmodified	_SEQETLQKY_					0	0	0		nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	MULTI-MSMS	A375_MHC_IP_R1	1	563.6743774414062	2	563.274761	1124.53497	-0.75615	-0.00042592	0.30961	0.0001744	-0.44654	-0.00025153	563.2747028536276	26.296	0.65809	26.296	25.866	26.524	0					21	12	3	0	0	0	0.0095015	1	7828	7828		107.56	35.856	1	6490600			47527	5927	34520	34800	46475	46475					-0.022317763528008072
SEQETLQKY	9	Unmodified	_SEQETLQKY_					0	0	0		nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	MULTI-MSMS	A375_MHC_IP_R2	2	563.6742553710938	2	563.274761	1124.53497	-0.98705	-0.00055598	0.59748	0.00033654	-0.38957	-0.00021943	563.2749870002151	25.764	0.45847	26.424	26.245	26.703	0.65992					14	8	2	0	0	0	0.0092755	1	8651	8651		103.82	17.492	1	5474700			47528	5927	34520	34800	46476	46476					-0.022317763528008072
SEQGAGQPGI	10	Unmodified	_SEQGAGQPGI_					0	0	0		ENST00000461377.5_1_7:45039147-45115653:+|nuORF	ENST00000461377.5_1_7:45039147-45115653:+|nuORF	ENST00000461377.5_1_7:45039147-45115653:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	472.6265563964844	2	472.227613	942.440674	-0.42356	-0.00020002	-0.35827	-0.00016918	-0.78183	-0.0003692	472.2274678312186	74.668	0.71105	74.668	74.247	74.958	0					24	13	2	0	0	0	0.60556	1	27161	27161		20.454	4.6064	1	2634700			47529	12183	34521	34801	46477	46477					-0.03284870384266014
SEQGAGQPGI	10	Unmodified	_SEQGAGQPGI_					0	0	0		ENST00000461377.5_1_7:45039147-45115653:+|nuORF	ENST00000461377.5_1_7:45039147-45115653:+|nuORF	ENST00000461377.5_1_7:45039147-45115653:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	472.6268310546875	2	472.227613	942.440674	-0.55858	-0.00026377	-0.213	-0.00010058	-0.77157	-0.00036436	472.22746572551614	73.931	0.71291	74.669	74.245	74.958	0.73751					25	13	3	0	0	0	0.60556	1	28020	28020		20.454	1.1966	1	2770700			47530	12183	34521	34801	46478	46478					-0.03284870384266014
SEQGGVLLL	9	Unmodified	_SEQGGVLLL_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	A375_MHC_IP_R1	1	916.2490844726562	1	915.514573	914.507297	-0.050493	-4.6227E-05	-0.31066	-0.00028441	-0.36115	-0.00033064	915.5142612508976	101.9	0.70811	101.9	101.5	102.2	0					31	13	3	0	0	0	0.050868	1	37363	37363		63.961	7.7835	1	7672000			47531	9025	34522	34802	46479	46479					0.046623651776371844
SEQGGVLLL	9	Unmodified	_SEQGGVLLL_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MATCH	A375_MHC_IP_R2	2		1	915.514573	914.507297	-0.20524	-0.0001879	0.24721	0.00022633	0.041972	3.8426E-05	915.5147216110805	100.91	0.81931	101.67	101.29	102.11	0.76278	-0.1158	0.0002837	NaN	63.961	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7249300			47532	9025	34522	34802							0.046623651776371844
SEQGPGTQ	8	Unmodified	_SEQGPGTQ_					0	0	0		nc|ENSG00000122188|Q8IWV1-2|LAX1;nc|ENSG00000122188|Q8IWV1-3|LAX1;ENSG00000122188|ENST00000442561|LAX1	nc|ENSG00000122188|Q8IWV1-2|LAX1	nc|ENSG00000122188|Q8IWV1-2|LAX1	MSMS	A375_MHC_IP_R1	1	402.152099609375	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.56	1	128.56	128.06	129.06	0								0	0	0	0.16876	1	49389	49389		2.3027	0	1				47533	3766	34523	34803	46480	46480					-0.06336803855458584
SEQHDQHVY	9	Unmodified	_SEQHDQHVY_					0	0	0		ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	MULTI-SECPEP	A375_MHC_IP_R1	1	380.95257568359375	3	381.500227	1141.47885	0.37059	0.00014138	0.51706	0.00019726	0.88765	0.00033864	381.5003022665128	23.1	0.25248	23.1	22.974	23.227	0					8	4	2	0	0	0	0.76187	1	6318	6318		7.609	6.8324	1	2624300			47534	6570	34524	34804	46481	46481					-0.08622984469616313
SEQHEKVKEL	10	Unmodified	_SEQHEKVKEL_					0	0	0			REV__CYP2C9|p.M255I|1|0.17|ENSG00000138109|chr10:94949230-94949230|G/A|missense_variant	REV__CYP2C9|p.M255I|1|0.17|ENSG00000138109|chr10:94949230-94949230|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	409.1448974609375	3	409.550698	1225.63027	0.20094	8.2296E-05	-1.6438	-0.00067324	-1.4429	-0.00059094	409.54953909492946	43.04	0.50797	43.04	42.689	43.197	0					17	9	3	0	0	0	0.92227	1	14813	14813		5.0475	3.4552	1	1445300	+		47535	15951	34525	34805	46482	46482					0.02647576838239729
SEQHEKVKEL	10	Unmodified	_SEQHEKVKEL_					0	0	0			REV__CYP2C9|p.M255I|1|0.17|ENSG00000138109|chr10:94949230-94949230|G/A|missense_variant	REV__CYP2C9|p.M255I|1|0.17|ENSG00000138109|chr10:94949230-94949230|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	409.14471435546875	3	409.550698	1225.63027	-0.029599	-1.2122E-05	-3.2985	-0.0013509	-3.3281	-0.001363	409.88344604029794	41.704	0.3082	42.479	42.35	42.659	0.77451					7	5	2	0	0	0	0.92227	1	15547	15547		7.9454	6.3531	1	1130700	+		47536	15951	34525	34805	46483	46483					0.02647576838239729
SEQINRPQF	9	Unmodified	_SEQINRPQF_					0	0	0			REV__nc|ENSG00000172403|Q9UMS6-4|SYNPO2	REV__nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-SECPEP	A375_MHC_IP_R2	2	559.7086791992188	2	559.783087	1117.55162	-1.0308	-0.000577	0.52671	0.00029484	-0.50405	-0.00028216	560.7857468662511	24.713	0.2012	25.356	25.263	25.465	0.64368					7	3	3	0	0	0	0.76187	1	8136	8136		11.64	0	1	1174500	+		47537	21141	34526	34806	46484	46484					-0.0024523067620521033
SEQIVNII	8	Unmodified	_SEQIVNII_					0	0	0		tr|U7SPH1|U7SPH1_FUSNUGeranyltranstransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01735PE=3SV=1	tr|U7SPH1|U7SPH1_FUSNUGeranyltranstransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01735PE=3SV=1	tr|U7SPH1|U7SPH1_FUSNUGeranyltranstransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01735PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	458.66058349609375	2	458.260925	914.507297	-0.19068	-8.738E-05	0.23053	0.00010564	0.039849	1.8261E-05	458.2609937243257	100.89	0.66774	101.65	101.29	101.96	0.76278					26	12	3	0	0	0	0.42086	1	38244	38244		52.268	7.8613	1	1651200			47538	29582	34527	34807	46485	46485					0.04662365177614447
SEQLSRPRR	9	Unmodified	_SEQLSRPRR_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A;REV__ENST00000583079.1_1_17:18023566-18025792:+|nuORF	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-SECPEP	A375_MHC_IP_R2	2	565.341796875	2	564.815253	1127.61595	-0.41115	-0.00023222	1.4339	0.0008099	1.0228	0.00057767	564.816079278034	42.216	0.86607	42.988	42.707	43.573	0.7724					20	16	2	0	0	0	0.77396	1	15678	15678		6.2058	0	1	1701500	+		47539	16952;26361	34528	34808	46486	46486					0.05724969200605301
SEQLYTSQLY	10	Unmodified	_SEQLYTSQLY_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|120|3|sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|120|3|sense	MULTI-SECPEP	A375_MHC_IP_R1	1	615.6575317382812	2	616.295693	1230.57683	-0.18549	-0.00011431	-1.1327	-0.00069808	-1.3182	-0.00081239	616.2947369147145	71.419	0.50853	71.419	71.057	71.565	0					14	9	2	0	0	0	0.81532	1	25989	25989		10.151	0	1	1609500	+		47540	26905	34529	34809	46487	46487					-0.029232206642518577
SEQMAGSEDDH	11	Unmodified	_SEQMAGSEDDH_					0	0	0		ENSG00000083168|ENST00000265713|KAT6A	ENSG00000083168|ENST00000265713|KAT6A	ENSG00000083168|ENST00000265713|KAT6A	MULTI-MSMS	A375_MHC_IP_R2	2	602.6917114257812	2	603.222399	1204.43025	-0.39249	-0.00023676	-1.829	-0.0011033	-2.2215	-0.00134	603.7223512827161	88.69	0.50661	89.422	89.026	89.533	0.7318					12	7	2	0	0	0	0.73332	1	33685	33685		5.7319	1.203	1	2066900			47541	1772	34530	34810	46488	46488					-0.16379265891669093
SEQNIDNNY	9	Unmodified	_SEQNIDNNY_					0	0	0			REV__nc|ENSG00000129003|Q709C8-4|VPS13C	REV__nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	A375_MHC_IP_R1	1	549.1306762695312	2	548.730717	1095.44688	-0.61598	-0.00033801	0.8758	0.00048058	0.25983	0.00014258	548.7312431593558	58.619	0.50791	58.619	58.328	58.836	0					21	9	3	0	0	0	0.53367	1	21086	21086		18.146	1.9972	1	1920800	+		47542	18478	34531	34811	46489	46489					-0.09702396943430358
SEQNISAMV	9	Unmodified	_SEQNISAMV_					0	0	0		ENST00000475937.5_1_3:71542611-71592656:-|nuORF;ENST00000471386.2_1_3:71542611-71632881:-|nuORF	ENST00000475937.5_1_3:71542611-71592656:-|nuORF	ENST00000475937.5_1_3:71542611-71592656:-|nuORF	MSMS	A375_MHC_IP_R2	2	489.6866149902344	2	489.731674	977.448796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.184	1	79.929	79.429	80.429	0.74474								0	0	0	0.15283	1	30050	30050		16.942	1.0951	1				47543	12353	34532	34812	46490	46490					-0.04083059459162541
SEQQRYWMSSY	11	Unmodified	_SEQQRYWMSSY_					0	0	0			REV__FGF14|p.L161W|1|0.31|ENSG00000102466|chr13:101726737-101726737|A/C|missense_variant	REV__FGF14|p.L161W|1|0.31|ENSG00000102466|chr13:101726737-101726737|A/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	489.2780456542969	3	488.878598	1463.61396	-0.9492	-0.00046405	-0.5926	-0.00028971	-1.5418	-0.00075376	488.87832755052057	24.722	0.81235	25.366	25.009	25.822	0.64368					32	15	3	0	0	0	0.99916	1	8186	8186		1.1098	0	1	6140700	+		47544	26630	34533	34813	46491	46491					-0.09929872390171113
SEQRRDLSDP	10	Unmodified	_SEQRRDLSDP_					0	0	0			REV__ENST00000545042.1_1_12:124090574-124092188:+|nuORF	REV__ENST00000545042.1_1_12:124090574-124092188:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	602.193603515625	2	601.79164	1201.56873	-0.51367	-0.00030912	2.5667	0.0015446	2.053	0.0012355	601.792843810651	28.197	0.50225	28.197	27.836	28.339	0					11	9	2	0	0	0	0.90513	1	8714	8714		12.241	0	1	3401500	+		47545	25992	34534	34814	46492	46492					-0.023993548610405924
SEQRSERRT	9	Unmodified	_SEQRSERRT_					0	0	0			REV__ENSG00000100941|ENST00000216832|PNN	REV__ENSG00000100941|ENST00000216832|PNN	MULTI-SECPEP	A375_MHC_IP_R2	2	384.2862548828125	3	383.530409	1147.5694	-0.37867	-0.00014523	2.221	0.00085182	1.8423	0.00070659	383.5312110974129	38.808	0.30706	39.582	39.453	39.76	0.77451					8	5	2	0	0	0	0.78798	1	14371	14371		4.5289	0	1	830040	+		47546	17131	34535	34815	46493	46493					0.0015148457866871468
SEQSHYSI	8	Unmodified	_SEQSHYSI_					0	0	0		nc|ENSG00000128683|Q99259-4|GAD1;ENSG00000128683|ENST00000358196|GAD1	nc|ENSG00000128683|Q99259-4|GAD1	nc|ENSG00000128683|Q99259-4|GAD1	MULTI-MSMS	A375_MHC_IP_R1	1	475.6689758300781	2	475.714339	949.414125	-0.56307	-0.00026786	0.053861	2.5623E-05	-0.50921	-0.00024224	475.714328694118	36.163	0.865	36.163	35.83	36.695	0					45	16	4	0	0	0	0.77603	1	12247	12247		9.3474	9.3474	1	20749000			47547	4158	34536	34816	46494	46494					-0.06260559275619926
SEQSLGQKL	9	Unmodified	_SEQSLGQKL_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	A375_MHC_IP_R1	1	495.66619873046875	2	495.266739	988.518924	-0.39669	-0.00019647	-0.87673	-0.00043422	-1.2734	-0.00063068	495.26650319376546	28.719	0.70914	28.719	28.44	29.149	0					28	13	3	0	0	0	1.633E-06	1	8905	8905		211.85	48.819	1	7326700			47548	2532	34537	34817	46495	46495					0.024205622009731087
SEQSLGQKL	9	Unmodified	_SEQSLGQKL_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	A375_MHC_IP_R2	2	495.6663818359375	2	495.266739	988.518924	-0.64023	-0.00031708	-0.7221	-0.00035763	-1.3623	-0.00067471	495.26646808486936	28.057	0.50716	28.735	28.553	29.06	0.67857					20	9	3	0	0	0	0.0078574	1	9656	9656		168.54	50.469	1	7259700			47549	2532	34537	34817	46496	46496					0.024205622009731087
SEQSPSIGY	9	Unmodified	_SEQSPSIGY_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-2|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MULTI-SECPEP	A375_MHC_IP_R2	2	484.6218566894531	2	484.221997	966.429441	-0.50283	-0.00024348	-0.23108	-0.00011189	-0.73391	-0.00035538	484.22199584060115	44.222	0.40593	44.991	44.782	45.188	0.7691					12	7	2	0	0	0	0.37663	1	16544	16544		36.506	7.4246	1	2077000			47550	2211	34538	34818	46497	46497					-0.055116924784101684
SEQSPSIGY	9	Unmodified	_SEQSPSIGY_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-2|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MULTI-MATCH	A375_MHC_IP_R1	1		2	484.221997	966.429441	0.27882	0.00013501	-1.042	-0.00050454	-0.76314	-0.00036953	484.2215408148103	44.871	0.50651	44.871	44.676	45.183	0	-0.059968	-0.00035782	NaN	36.506	16	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	999260			47551	2211	34538	34818							-0.055116924784101684
SEQTGKELLY	10	Unmodified	_SEQTGKELLY_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY;ACLY|p.A310Lfs*2|1|0.05|ENSG00000131473|chr17:41905578-41905597|GTCTGCTGCTCGCTGGGGGC/-|frameshift_variant;ACLY|p.Y317Mfs*11|1|0.06|ENSG00000131473|chr17:41905576-41905576|A/-|frameshift_variant	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-SECPEP	A375_MHC_IP_R1	1	584.6983642578125	2	584.298236	1166.58192	-0.25975	-0.00015177	0.31234	0.0001825	0.052588	3.0727E-05	584.2982769457454	42.074	0.66208	42.074	41.674	42.336	0					30	12	3	0	0	0	0.072569	1	14556	14556		94.909	44.976	1	6135800			47552	4335	34539	34819	46498	46498					0.0052908319835296425
SEQTGKELLY	10	Unmodified	_SEQTGKELLY_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY;ACLY|p.A310Lfs*2|1|0.05|ENSG00000131473|chr17:41905578-41905597|GTCTGCTGCTCGCTGGGGGC/-|frameshift_variant;ACLY|p.Y317Mfs*11|1|0.06|ENSG00000131473|chr17:41905576-41905576|A/-|frameshift_variant	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-SECPEP	A375_MHC_IP_R2	2	584.6979370117188	2	584.298236	1166.58192	-0.66364	-0.00038776	0.72522	0.00042374	0.061581	3.5982E-05	584.2984532091572	41.308	0.71015	42.082	41.743	42.453	0.77451					30	13	3	0	0	0	0.025827	1	15305	15305		91.085	41.152	1	5695400			47553	4335	34539	34819	46499	46499					0.0052908319835296425
SEQWKFQEL	9	Unmodified	_SEQWKFQEL_					0	0	0		ENST00000502329.1_1_17:49109002-49124830:-|nuORF;ENST00000511987.5_1_17:49109002-49124111:-|nuORF;ENST00000514613.5_1_17:49067015-49156972:-|nuORF;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;nc|ENSG00000008294|O60271-9|SPAG9;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9	ENST00000502329.1_1_17:49109002-49124830:-|nuORF	ENST00000502329.1_1_17:49109002-49124830:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	399.130615234375	3	398.864506	1193.57169	-0.36462	-0.00014543	0.76957	0.00030696	0.40496	0.00016152	398.8647406584152	66.079	0.50661	66.079	65.768	66.275	0					19	9	3	0	0	0	0.78798	1	23958	23958		2.2828	0	1	1669100			47554	956	34540	34820	46500	46500					-0.01735479736248635
SEQWTKQF	8	Unmodified	_SEQWTKQF_					0	0	0			REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	REV__nc|ENSG00000163092|A4UGR9-2|XIRP2	MSMS	A375_MHC_IP_R2	2	527.1983642578125	2	527.253631	1052.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.62	1	39.395	38.895	39.895	0.77451								0	0	0	0.16876	1	14228	14228		20.454	2.3186	1		+		47555	20338	34541	34821	46501	46501					-0.031437069705361864
SEQYFPALQKF	11	Unmodified	_SEQYFPALQKF_					0	0	0		ENSG00000131944|ENST00000588258|FAAP24	ENSG00000131944|ENST00000588258|FAAP24	ENSG00000131944|ENST00000588258|FAAP24	MULTI-MSMS	A375_MHC_IP_R1	1	679.7415161132812	2	679.342978	1356.6714	-0.5149	-0.00034979	-0.99507	-0.00067599	-1.51	-0.0010258	679.341999188809	72.568	0.70975	72.568	72.321	73.031	0					27	13	3	0	0	0	0.73332	1	26413	26413		5.7319	0	1	3840100			47556	4359	34542	34822	46502	46502					0.007333378776820609
SEQYFPALQKF	11	Unmodified	_SEQYFPALQKF_					0	0	0		ENSG00000131944|ENST00000588258|FAAP24	ENSG00000131944|ENST00000588258|FAAP24	ENSG00000131944|ENST00000588258|FAAP24	MULTI-MSMS	A375_MHC_IP_R2	2	679.74267578125	2	679.342978	1356.6714	-0.92724	-0.00062991	-1.1788	-0.00080078	-2.106	-0.0014307	679.3418196705309	71.868	0.65762	72.602	72.213	72.871	0.73421					27	12	3	0	0	0	0.73332	1	27239	27239		5.7319	0	1	3582900			47557	4359	34542	34822	46503	46503					0.007333378776820609
SEQYGGKVG	9	Unmodified	_SEQYGGKVG_					0	0	0			REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF	REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	462.6452331542969	2	462.724707	923.43486	-0.45506	-0.00021057	0.8607	0.00039827	0.40565	0.0001877	462.7248704006383	36.463	0.35615	36.463	36.287	36.644	0					9	6	2	0	0	0	0.51106	1	12192	12192		19.257	1.1106	1	1666600	+		47558	17605	34543	34823	46504	46504					-0.029919688959353152
SEQYGGKVG	9	Unmodified	_SEQYGGKVG_					0	0	0			REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF	REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	462.6451721191406	2	462.724707	923.43486	-0.72653	-0.00033618	1.2035	0.00055689	0.47696	0.0002207	462.7251576667273	35.595	0.40558	36.358	36.233	36.638	0.76338					12	7	2	0	0	0	0.51106	3	12934	12934;12940;13004		19.257	2.3147	1	1405600	+		47559	17605	34543	34823	46505;46506;46507	46505					-0.029919688959353152
SERAQKWRLSL	11	Unmodified	_SERAQKWRLSL_					0	0	0		ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	MULTI-MSMS	A375_MHC_IP_R1	1	458.99249267578125	3	458.59312	1372.75753	-0.24898	-0.00011418	-0.80737	-0.00037025	-1.0564	-0.00048444	458.5927576023119	57.745	0.96356	57.745	57.467	58.43	0					69	18	6	0	0	0	0.68694	1	20911	20911		10.016	1.7298	1	99760000			47560	9445	34544	34824	46508	46508					0.08606342503094311
SERATARQWP	10	Unmodified	_SERATARQWP_					0	0	0			REV__ENSG00000162068|ENST00000293973|NTN3	REV__ENSG00000162068|ENST00000293973|NTN3	MULTI-SECPEP	A375_MHC_IP_R1	1	601.7068481445312	2	601.307261	1200.59997	-0.64523	-0.00038798	0.24481	0.00014721	-0.40042	-0.00024077	601.3075121931353	23.795	0.25386	23.795	23.635	23.889	0					9	4	3	0	0	0	0.92957	1	6628	6628		6.2058	0	1	5206600	+		47561	20232	34545	34825	46509	46509					0.0076926296369492775
SEREEVSSW	9	Unmodified	_SEREEVSSW_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	A375_MHC_IP_R1	1	555.1483764648438	2	554.74891	1107.48327	-0.60565	-0.00033599	0.21336	0.00011836	-0.3923	-0.00021763	554.7485885201069	34.278	0.55798	34.278	33.898	34.456	0					16	10	3	0	0	0	0.035419	1	11298	11298		70.332	3.8753	1	5294400			47562	2743	34546	34826	46510	46510					-0.06617520046711434
SEREEVSSW	9	Unmodified	_SEREEVSSW_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	A375_MHC_IP_R2	2	555.148193359375	2	554.74891	1107.48327	-1.2484	-0.00069256	0.085269	4.7303E-05	-1.1632	-0.00064526	554.7488424835939	33.571	0.60791	34.323	34.043	34.651	0.75225					17	11	3	0	0	0	0.035419	1	12050	12050		70.332	0	1	6650900			47563	2743	34546	34826	46511	46511					-0.06617520046711434
SEREFFVKW	9	Unmodified	_SEREFFVKW_					0	0	0		nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3	nc|ENSG00000170004|Q12873-3|CHD3	nc|ENSG00000170004|Q12873-3|CHD3	MULTI-MSMS	A375_MHC_IP_R1	1	410.2767333984375	3	409.876746	1226.60841	0.046704	1.9143E-05	2.244	0.00091975	2.2907	0.0009389	409.87693523048756	70.646	0.61449	70.646	70.442	71.057	0					28	11	3	0	0	0	0.4875	1	25697	25697		14.957	8.7653	1	1838800			47564	14761	34547	34827	46512	46512					0.004168168803289518
SEREFFVKW	9	Unmodified	_SEREFFVKW_					0	0	0		nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3	nc|ENSG00000170004|Q12873-3|CHD3	nc|ENSG00000170004|Q12873-3|CHD3	MULTI-MATCH	A375_MHC_IP_R2	2		3	409.876746	1226.60841	0.089198	3.656E-05	3.2776	0.0013434	3.3668	0.00138	410.5482700669733	69.897	0.71239	70.631	70.233	70.946	0.73421	-0.0073412	0.00079976	NaN	14.957	30	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2205800			47565	14761	34547	34827							0.004168168803289518
SERIRDTCGG	10	Unmodified	_SERIRDTCGG_					0	0	0		nc|ENSG00000070495|Q6NYC1-2|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	MULTI-SECPEP	A375_MHC_IP_R2	2	547.2113037109375	2	547.256379	1092.49821	-0.82857	-0.00045344	-1.7947	-0.00098216	-2.6233	-0.0014356	547.7584079943931	39.775	0.50859	40.55	40.32	40.828	0.77451					16	9	3	0	0	0	0.92227	1	14663	14663		13.042	5.7532	1	3305900			47566	14478	34548	34828	46513	46513					-0.044343514503680126
SERLELVF	8	Unmodified	_SERLELVF_					0	0	0		ENSG00000165124|ENST00000374469|SVEP1;SVEP1|p.F738Lfs*14|1|0.19|ENSG00000165124|chr9:110481393-110481393|A/-|frameshift_variant;nc|ENSG00000165124|Q4LDE5-2|SVEP1;SVEP1|p.T1500Kfs*6|1|0.71|ENSG00000165124|chr9:110443685-110443685|G/-|frameshift_variant;nc|ENSG00000165124|Q4LDE5-4|SVEP1	ENSG00000165124|ENST00000374469|SVEP1	ENSG00000165124|ENST00000374469|SVEP1	MULTI-MSMS	A375_MHC_IP_R2	2	497.2340087890625	2	496.7742	991.533846	-0.77247	-0.00038374	-0.14293	-7.1004E-05	-0.9154	-0.00045475	496.77408974210596	60.757	0.3036	61.502	61.263	61.566	0.74503					7	5	2	0	0	0	0.73622	1	23010	23010		24.021	5.8742	1	1421000			47567	6918	34549	34829	46514	46514					0.0377405406896969
SERLGKQNFHK	11	Unmodified	_SERLGKQNFHK_					0	0	0		COL6A2|p.E846K|1|0.58|ENSG00000142173|chr21:46132028-46132028|G/A|missense_variant	COL6A2|p.E846K|1|0.58|ENSG00000142173|chr21:46132028-46132028|G/A|missense_variant	COL6A2|p.E846K|1|0.58|ENSG00000142173|chr21:46132028-46132028|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	449.1509094238281	3	448.57747	1342.71058	-0.31763	-0.00014248	-0.018007	-8.0777E-06	-0.33564	-0.00015056	448.5774279071435	28.062	0.35137	28.062	27.887	28.238	0					10	6	2	0	0	0	0.99819	1	8641	8641		1.9275	0	1	1918000			47568	559	34550	34830	46515	46515					0.052934829519244886
SERLLISLL	9	Unmodified	_SERLLISLL_					0	0	0		ENST00000601927.1_1_19:47996374-47999001:-|nuORF;ENST00000597778.5_1_19:47996282-47999001:-|nuORF	ENST00000601927.1_1_19:47996374-47999001:-|nuORF	ENST00000601927.1_1_19:47996374-47999001:-|nuORF	MSMS	A375_MHC_IP_R2	2	522.6541137695312	2	522.326599	1042.63865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.82	1	142.85	142.35	143.35	0.030731								0	0	0	0.15486	1	55830	55830		3.5965	0	1				47569	13849	34551	34831	46516	46516					0.11903175545535305
SERMKVQEK	9	Unmodified	_SERMKVQEK_					0	0	0			REV__ENSG00000140474|ENST00000440863|ULK3	REV__ENSG00000140474|ENST00000440863|ULK3	MULTI-SECPEP	A375_MHC_IP_R1	1	378.6206359863281	3	378.869374	1133.58629	0.26296	9.9628E-05	-1.5602	-0.00059113	-1.2973	-0.0004915	379.2037914297527	19.683	0.55912	19.683	19.471	20.03	0					13	10	2	0	0	0	0.69507	1	4884	4884		6.1918	0	1	958120	+		47570	19215	34552	34832	46517	46517					0.02484269140268225
SERQVTIWFQ	10	Unmodified	_SERQVTIWFQ_					0	0	0		ENSG00000106031|ENST00000649031|HOXA13;ENSG00000123364|ENST00000243056|HOXC13;ENSG00000128714|ENST00000392539|HOXD13	ENSG00000106031|ENST00000649031|HOXA13;ENSG00000123364|ENST00000243056|HOXC13;ENSG00000128714|ENST00000392539|HOXD13	ENSG00000123364|ENST00000243056|HOXC13	MSMS	A375_MHC_IP_R1	1	431.9456787109375	3	431.891055	1292.65134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.293	1	49.293	48.793	49.793	0								0	0	0	0.15397	1	17428	17428		7.9454	3.5392	1				47571	2662;3842;4161	34553	34833	46518	46518					0.016715869377549097
SERRASEQM	9	Unmodified	_SERRASEQM_					0	0	0		ENSG00000163424|ENST00000295622|TEX55	ENSG00000163424|ENST00000295622|TEX55	ENSG00000163424|ENST00000295622|TEX55	MULTI-MSMS	A375_MHC_IP_R1	1	547.6563110351562	2	547.256379	1092.49821	-0.47904	-0.00026216	0.57106	0.00031252	0.092018	5.0357E-05	547.2565237066558	31.668	0.55804	31.668	31.363	31.921	0					21	10	3	0	0	0	0.50892	1	10157	10157		19.362	1.227	1	4097900			47572	6660	34554	34834	46519	46519					-0.044343514503680126
SERRASEQM	9	Unmodified	_SERRASEQM_					0	0	0		ENSG00000163424|ENST00000295622|TEX55	ENSG00000163424|ENST00000295622|TEX55	ENSG00000163424|ENST00000295622|TEX55	MULTI-MSMS	A375_MHC_IP_R2	2	547.6560668945312	2	547.256379	1092.49821	-0.82107	-0.00044934	0.51968	0.0002844	-0.30139	-0.00016494	547.2564812709616	30.997	0.50788	31.716	31.467	31.974	0.71857					15	9	2	0	0	0	0.57432	1	10975	10975		16.149	2.2431	1	5079600			47573	6660	34554	34834	46520	46520					-0.044343514503680126
SERRASEQM	9	Unmodified	_SERRASEQM_					0	0	0		ENSG00000163424|ENST00000295622|TEX55	ENSG00000163424|ENST00000295622|TEX55	ENSG00000163424|ENST00000295622|TEX55	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	547.256379	1092.49821	-0.47904	-0.00026216	0.57106	0.00031252	0.092018	5.0357E-05	547.2565237066558	31.668	0.55804	31.668	31.363	31.921	0	-0.023788	3.042E-05	NaN	19.362	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4097900			47574	6660	34554	34834							-0.044343514503680126
SERRASEQM	9	Unmodified	_SERRASEQM_					0	0	0		ENSG00000163424|ENST00000295622|TEX55	ENSG00000163424|ENST00000295622|TEX55	ENSG00000163424|ENST00000295622|TEX55	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	547.256379	1092.49821	-0.82107	-0.00044934	0.51968	0.0002844	-0.30139	-0.00016494	547.2564812709616	30.997	0.50788	31.716	31.467	31.974	0.71857	0.023788	-2.5817E-05	NaN	19.362	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5079600			47575	6660	34554	34834							-0.044343514503680126
SERRETWSVW	10	Unmodified	_SERRETWSVW_					0	0	0		ENST00000515682.5_1_4:8207046-8242679:+|nuORF;ENST00000506360.5_1_4:8207046-8220006:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	445.27880859375	3	445.886192	1334.63675	-0.39988	-0.0001783	-0.26615	-0.00011867	-0.66602	-0.00029697	446.22097640559014	41.585	0.45989	41.585	41.317	41.777	0					20	8	4	0	0	0	0.94707	1	14341	14341		0.10794	0	1	4660200			47576	12954	34555	34835	46521	46521					-0.017184852103810044
SERRKYLEGSP	11	Unmodified	_SERRKYLEGSP_					0	0	0		ENST00000328759.11_1_19:48698748-48698856:+|nuORF	ENST00000328759.11_1_19:48698748-48698856:+|nuORF	ENST00000328759.11_1_19:48698748-48698856:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	441.6336669921875	3	441.233481	1320.67861	-0.1959	-8.6437E-05	0.4965	0.00021907	0.3006	0.00013264	441.2336807501511	28.233	0.45375	28.233	28.037	28.491	0					13	8	2	0	0	0	0.73239	1	8734	8734		6.6235	2.2173	1	3200300			47577	10750	34556	34836	46522	46522					0.031100704781238164
SERRQEEWS	9	Unmodified	_SERRQEEWS_					0	0	0		nc|ENSG00000160219|Q8WWW8-3|GAB3;nc|ENSG00000160219|Q8WWW8|GAB3;ENSG00000160219|ENST00000424127|GAB3	nc|ENSG00000160219|Q8WWW8-3|GAB3	nc|ENSG00000160219|Q8WWW8-3|GAB3	MULTI-SECPEP	A375_MHC_IP_R1	1	402.5800476074219	3	402.854781	1205.54251	-0.10346	-4.1681E-05	2.184	0.00087984	2.0806	0.00083816	402.8558324885142	22.815	0.20095	22.815	22.723	22.924	0					5	3	2	0	0	0	0.80101	1	6133	6133		1.0715	0	1	963370			47578	6406	34557	34837	46523	46523					-0.052036240325151084
SERRTVVP	8	Unmodified	_SERRTVVP_					0	0	0		nc|ENSG00000139971|Q86TY3-3|ARMH4;nc|ENSG00000139971|Q86TY3-2|ARMH4;ENST00000334342.5_1_14:58583046-58606076:-|nuORF;ENSG00000139971|ENST00000267485|ARMH4	nc|ENSG00000139971|Q86TY3-3|ARMH4	nc|ENSG00000139971|Q86TY3-3|ARMH4	MULTI-MSMS	A375_MHC_IP_R2	2	472.6695251464844	2	472.269616	942.524678	-0.36844	-0.000174	-0.04294	-2.0279E-05	-0.41138	-0.00019428	472.26956050665984	113.7	2.7925	114.41	113.62	116.41	0.70984					135	54	3	0	0	0	0.7773	1	42950	42950		4.756	0	1	15090000			47579	5119	34558	34838	46524	46524					0.051117055032818826
SERSLGWTLS	10	Unmodified	_SERSLGWTLS_					0	0	0			REV__nc|ENSG00000143515|P98198-4|ATP8B2	REV__nc|ENSG00000143515|P98198-4|ATP8B2	MULTI-MSMS	A375_MHC_IP_R2	2	379.5960998535156	3	379.196256	1134.56694	0.049147	1.8636E-05	-0.14687	-5.5691E-05	-0.097718	-3.7054E-05	379.19616251821174	30.896	0.65844	31.615	31.367	32.026	0.71857					23	12	3	0	0	0	0.62015	1	10913	10913		12.856	1.7907	1	2895900	+		47580	27271	34559	34839	46525	46525					0.005036361210159157
SERSLGWTLS	10	Unmodified	_SERSLGWTLS_					0	0	0			REV__nc|ENSG00000143515|P98198-4|ATP8B2	REV__nc|ENSG00000143515|P98198-4|ATP8B2	MULTI-MATCH	A375_MHC_IP_R1	1		3	379.196256	1134.56694	0.38024	0.00014419	-0.12306	-4.6666E-05	0.25718	9.752E-05	379.1962496963886	31.609	0.76216	31.609	31.262	32.024	0	-0.0027677	1.1612E-05	NaN	12.856	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1744500	+		47581	27271	34559	34839							0.005036361210159157
SERSLGWTLS	10	Unmodified	_SERSLGWTLS_					0	0	0			REV__nc|ENSG00000143515|P98198-4|ATP8B2	REV__nc|ENSG00000143515|P98198-4|ATP8B2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	379.196256	1134.56694	0.049147	1.8636E-05	-0.14687	-5.5691E-05	-0.097718	-3.7054E-05	379.19616251821174	30.896	0.65844	31.615	31.367	32.026	0.71857	0.0027677	-1.5463E-05	NaN	12.856	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2895900	+		47582	27271	34559	34839							0.005036361210159157
SERTEASV	8	Unmodified	_SERTEASV_					0	0	0			REV__ENST00000496168.1_1_2:89246969-89247011:-|nuORF	REV__ENST00000496168.1_1_2:89246969-89247011:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	440.11431884765625	2	439.714339	877.414125	-0.0068387	-3.0071E-06	-0.044841	-1.9717E-05	-0.051679	-2.2724E-05	439.7142039220181	62.753	0.51102	62.753	62.403	62.914	0					13	9	2	0	0	0	0.93416	1	22687	22687		20.871	11.524	1	1618300	+		47583	25456	34560	34840	46526	46526					-0.029485592756145707
SERTEASV	8	Unmodified	_SERTEASV_					0	0	0			REV__ENST00000496168.1_1_2:89246969-89247011:-|nuORF	REV__ENST00000496168.1_1_2:89246969-89247011:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	440.11376953125	2	439.714339	877.414125	-0.58386	-0.00025673	-0.44994	-0.00019785	-1.0338	-0.00045458	439.71414290871706	61.869	0.40306	62.612	62.471	62.874	0.74263					13	7	2	0	0	0	0.93416	1	23476	23476		14.582	5.2343	1	1304600	+		47584	25456	34560	34840	46527	46527					-0.029485592756145707
SERTVTFT	8	Unmodified	_SERTVTFT_					0	0	0		ENSG00000132975|ENST00000405846|GPR12	ENSG00000132975|ENST00000405846|GPR12	ENSG00000132975|ENST00000405846|GPR12	MSMS	A375_MHC_IP_R2	2	470.6678466796875	2	470.740357	939.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.099	1	19.702	19.202	20.202	0.60308								0	0	0	0.16876	1	5828	5828		10.824	0.64053	1				47585	4471	34561	34841	46528	46528					-0.005993958618546458
SERWSGSAF	9	Unmodified	_SERWSGSAF_					0	0	0		FLG|p.S967F|1|0.27|ENSG00000143631|chr1:152311986-152311986|G/A|missense_variant;FLG|p.S642F|1|0.13|ENSG00000143631|chr1:152312961-152312961|G/A|missense_variant;FLG|p.S3236F|1|0.29|ENSG00000143631|chr1:152305179-152305179|G/A|missense_variant;FLG|p.S1939F|1|0.37|ENSG00000143631|chr1:152309070-152309070|G/A|missense_variant	FLG|p.S967F|1|0.27|ENSG00000143631|chr1:152311986-152311986|G/A|missense_variant	FLG|p.S967F|1|0.27|ENSG00000143631|chr1:152311986-152311986|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	514.10791015625	2	513.735606	1025.45666	-0.60728	-0.00031198	-1.2429	-0.00063852	-1.8502	-0.0009505	513.7347987540132	85.193	0.50914	85.929	85.78	86.29	0.73602					15	9	2	0	0	0	0.76187	1	32480	32480		7.2892	0	1	1516500			47586	14005	34562	34842	46529	46529					-0.05505164147371033
SERYAELY	8	Unmodified	_SERYAELY_					0	0	0		ENSG00000188483|ENST00000372491|IER5L;nc|ENSG00000188483|Q5T953-2|IER5L	ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	MULTI-MSMS	A375_MHC_IP_R2	2	516.1923217773438	2	515.745639	1029.47673	-0.99697	-0.00051418	0.72794	0.00037543	-0.26903	-0.00013875	516.248430115316	40.892	0.50797	41.667	41.438	41.946	0.77451					15	9	2	0	0	0	0.7256	1	15196	15196		26.884	0.54238	1	2365200			47587	8908	34563	34843	46530	46530					-0.03683413207409103
SESALEKKL	9	Unmodified	_SESALEKKL_					0	0	0		ENSG00000101413|ENST00000373433|RPRD1B	ENSG00000101413|ENST00000373433|RPRD1B	ENSG00000101413|ENST00000373433|RPRD1B	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1844787597656	2	502.784764	1003.55498	-0.92111	-0.00046312	-0.01957	-9.8395E-06	-0.94068	-0.00047296	502.78472766059724	23.576	0.20353	24.206	24.079	24.283	0.63014					6	3	2	0	0	0	0.030244	1	7628	7628		107.1	51.597	1	4045900			47588	2290	34564	34844	46531	46531					0.053340193778240064
SESARQLFL	9	Unmodified	_SESARQLFL_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000583408.5_1_17:30207568-30228646:-|nuORF;ENST00000490218.6_1_17:30212004-30222015:-|nuORF;ENST00000560291.2_1_15:52152484-52153489:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	A375_MHC_IP_R1	1	526.18212890625	2	525.782556	1049.55056	-0.52712	-0.00027715	0.1999	0.00010511	-0.32722	-0.00017205	525.7824348504853	64.571	0.61182	64.571	64.343	64.954	0					26	11	3	0	0	0	0.062639	1	23351	23351		59.368	19.419	1	7054500			47589	2825	34565	34845	46532	46532					0.027765549549030766
SESARQLFL	9	Unmodified	_SESARQLFL_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000583408.5_1_17:30207568-30228646:-|nuORF;ENST00000490218.6_1_17:30212004-30222015:-|nuORF;ENST00000560291.2_1_15:52152484-52153489:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	A375_MHC_IP_R2	2	526.1820068359375	2	525.782556	1049.55056	-0.41371	-0.00021752	3.1553	0.001659	2.7416	0.0014415	525.7828070119106	63.412	1.3722	64.152	63.582	64.954	0.74022					51	26	4	0	0	0	0.02114	1	24109	24109		82.529	34.183	1	6294900			47590	2825	34565	34845	46533	46533					0.027765549549030766
SESAVFHGF	9	Unmodified	_SESAVFHGF_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	A375_MHC_IP_R1	1	490.6530456542969	2	490.727249	979.439946	-0.32573	-0.00015985	-0.11438	-5.6128E-05	-0.44011	-0.00021597	490.72713139959694	61.509	2.0423	61.509	60.821	62.863	0					109	39	5	0	0	0	0.008207	3	22143	22061;22109;22143		129.2	70.522	1	199510000			47591	903	34566	34846	46534;46535;46536	46536					-0.05059665033320471
SESAVFHGF	9	Unmodified	_SESAVFHGF_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	A375_MHC_IP_R2	2	491.1268615722656	2	490.727249	979.439946	-0.83246	-0.00040851	0.085881	4.2144E-05	-0.74658	-0.00036637	490.7272588212855	60.693	1.8726	61.438	60.903	62.776	0.74503					99	36	5	0	0	0	0.0019454	3	22909	22884;22909;23132		144.66	85.978	1	215350000			47592	903	34566	34846	46537;46538;46539	46538					-0.05059665033320471
SESAVFHGF	9	Unmodified	_SESAVFHGF_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	A375_MHC_IP_R2	2	980.47314453125	1	980.447222	979.439946	-0.30056	-0.00029468	0.34946	0.00034262	0.048895	4.7939E-05	980.4470749492478	60.688	0.8156	61.433	60.853	61.668	0.74503					35	15	3	0	0	0	0.0098824	1	23000	23000		117.6	92.608	1	15287000			47593	903	34566	34846	46540	46540					-0.05059665033320471
SESCLFRFF	9	Carbamidomethyl (C)	_SESC(Carbamidomethyl (C))LFRFF_	SESC(1)LFRFF		SESC(60)LFRFF		0	1	0		NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1;ENST00000540608.5_1_18:21119776-21166285:-|nuORF	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	597.1771850585938	2	596.776416	1191.53828	-0.1213	-7.2391E-05	-0.14741	-8.7972E-05	-0.26871	-0.00016036	596.7764860704838	116.69	0.40618	116.69	116.4	116.8	0					12	7	2	0	0	0	0.06083	1	42842	42842		60.074	39.659	1	3765700			47594	5244	34567	34847	46541	46541	34				-0.04982804779797334
SESCLFRFF	9	Carbamidomethyl (C)	_SESC(Carbamidomethyl (C))LFRFF_	SESC(1)LFRFF		SESC(93)LFRFF		0	1	0		NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1;ENST00000540608.5_1_18:21119776-21166285:-|nuORF	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	597.1769409179688	2	596.776416	1191.53828	-0.38845	-0.00023181	0.64555	0.00038525	0.2571	0.00015343	596.7764804127867	115.78	0.40746	116.47	116.24	116.64	0.68999					13	7	2	0	0	0	0.012843	1	43653	43653		92.653	66.385	1	3166600			47595	5244	34567	34847	46542	46542	34				-0.04982804779797334
SESDLNHSF	9	Unmodified	_SESDLNHSF_					0	0	0		ENSG00000198833|ENST00000435041|UBE2J1	ENSG00000198833|ENST00000435041|UBE2J1	ENSG00000198833|ENST00000435041|UBE2J1	MULTI-MSMS	A375_MHC_IP_R1	1	518.6222534179688	2	518.222528	1034.4305	-0.59689	-0.00030932	-0.080447	-4.1689E-05	-0.67734	-0.00035101	518.2224762779389	33.195	0.60925	33.195	32.938	33.547	0					29	11	3	0	0	0	0.0018976	1	10799	10799		145.13	37.943	1	10453000			47596	9340	34568	34848	46543	46543					-0.08533478109507087
SESDLNHSF	9	Unmodified	_SESDLNHSF_					0	0	0		ENSG00000198833|ENST00000435041|UBE2J1	ENSG00000198833|ENST00000435041|UBE2J1	ENSG00000198833|ENST00000435041|UBE2J1	MULTI-SECPEP	A375_MHC_IP_R2	2	518.621826171875	2	518.222528	1034.4305	-0.7607	-0.00039421	0.0017271	8.9501E-07	-0.75897	-0.00039332	518.2224851662884	32.519	0.55897	33.256	33.061	33.62	0.73692					23	10	3	0	0	0	9.464E-05	1	11563	11563		179.17	71.987	1	12252000			47597	9340	34568	34848	46544	46544					-0.08533478109507087
SESDLQTVF	9	Unmodified	_SESDLQTVF_					0	0	0		ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	MULTI-MSMS	A375_MHC_IP_R1	1	513.6425170898438	2	513.242929	1024.47131	-0.69836	-0.00035843	0.10382	5.3284E-05	-0.59454	-0.00030515	513.2429183833058	85.444	0.9166	85.444	84.8	85.717	0					33	17	3	0	0	0	0.040308	1	31267	31267		68.081	30.107	1	1921100			47598	1014	34569	34849	46545	46545					-0.03995136789899334
SESELTRLL	9	Unmodified	_SESELTRLL_					0	0	0		nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF	nc|ENSG00000108312|P17480-2|UBTF	nc|ENSG00000108312|P17480-2|UBTF	MULTI-SECPEP	A375_MHC_IP_R1	1	524.2032470703125	2	524.287671	1046.56079	-0.4949	-0.00025947	-0.51288	-0.0002689	-1.0078	-0.00052837	524.2873713118896	77.434	1.0167	77.434	76.827	77.844	0					27	19	2	0	0	0	0.4465	1	28259	28259		38.176	12.776	1	2456400			47599	2792	34570	34850	46546	46546					0.039371178894725745
SESEPGSRQW	10	Unmodified	_SESEPGSRQW_					0	0	0		ENSG00000101577|ENST00000677752|LPIN2	ENSG00000101577|ENST00000677752|LPIN2	ENSG00000101577|ENST00000677752|LPIN2	MULTI-MSMS	A375_MHC_IP_R1	1	582.1599731445312	2	581.759809	1161.50507	-0.53549	-0.00031153	0.018432	1.0723E-05	-0.51706	-0.0003008	581.7599163828398	26.108	0.40632	26.108	25.966	26.373	0					11	7	2	0	0	0	0.0079374	1	7761	7761		93.938	27.481	1	4011600			47600	2310	34571	34851	46547	46547					-0.06922715298105686
SESEPGSRQW	10	Unmodified	_SESEPGSRQW_					0	0	0		ENSG00000101577|ENST00000677752|LPIN2	ENSG00000101577|ENST00000677752|LPIN2	ENSG00000101577|ENST00000677752|LPIN2	MULTI-MATCH	A375_MHC_IP_R2	2		2	581.759809	1161.50507	-0.8043	-0.00046791	0.53588	0.00031175	-0.26843	-0.00015616	581.7602524347036	25.52	0.45629	26.168	25.98	26.436	0.64746	0.030156	0.00038479	NaN	93.938	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3222400			47601	2310	34571	34851							-0.06922715298105686
SESERVEFF	9	Unmodified	_SESERVEFF_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	A375_MHC_IP_R1	1	565.6613159179688	2	565.261653	1128.50875	-0.6333	-0.00035798	1.3589	0.00076814	0.72561	0.00041016	565.2619935970407	66.787	0.56195	66.787	66.428	66.99	0					22	10	3	0	0	0	0.2415	1	24220	24220		34.932	7.3033	1	1960600			47602	8598	34572	34852	46548	46548					-0.05036045524275323
SESERVEFF	9	Unmodified	_SESERVEFF_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MATCH	A375_MHC_IP_R2	2		2	565.261653	1128.50875	-0.6495	-0.00036714	2.8069	0.0015866	2.1574	0.0012195	565.2645181434677	66.014	0.45897	66.752	66.475	66.934	0.73811	-0.017369	0.0014609	NaN	34.932	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1257700			47603	8598	34572	34852							-0.05036045524275323
SESFDTTVSL	10	Unmodified	_SESFDTTVSL_					0	0	0			REV__nc|ENSG00000136153|Q8WWI1-3|LMO7	REV__nc|ENSG00000136153|Q8WWI1-3|LMO7	MULTI-MSMS	A375_MHC_IP_R1	1	543.2449340820312	2	543.253494	1084.49243	-0.61855	-0.00033603	-1.1517	-0.00062567	-1.7703	-0.0009617	543.7551438307703	46.414	1.5768	46.414	45.89	47.467	0					82	30	4	0	0	0	0.6806	1	16246	16246		14.838	0	1	41742000	+		47604	18919	34573	34853	46549	46549					-0.0464317148102964
SESFKSKEF	9	Unmodified	_SESFKSKEF_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	A375_MHC_IP_R1	1	545.1661987304688	2	544.766571	1087.51859	-0.75107	-0.00040916	-0.11645	-6.3439E-05	-0.86752	-0.0004726	544.7664164591376	24.255	0.40487	24.255	24.143	24.547	0					11	7	2	0	0	0	0.014055	1	6863	6863		91.085	39.455	1	3972700			47605	5785	34574	34854	46550	46550					-0.021668575189096373
SESFKSKEF	9	Unmodified	_SESFKSKEF_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MATCH	A375_MHC_IP_R2	2		2	544.766571	1087.51859	-1.0971	-0.00059765	0.39744	0.00021651	-0.69963	-0.00038113	544.766841949431	23.539	0.2023	24.169	24.029	24.232	0.63014	-0.042851	0.00025871	NaN	91.085	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2395900			47606	5785	34574	34854							-0.021668575189096373
SESGDPLDEDD	11	Unmodified	_SESGDPLDEDD_					0	0	0		ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	MSMS	A375_MHC_IP_R1	1	589.708740234375	2	589.720212	1177.42587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.128	1	26.128	25.628	26.628	0								0	0	0	0.16108	1	7744	7744		13.042	2.2185	1				47607	9017	34575	34855	46551	46551					-0.1557445183359505
SESGGLNW	8	Unmodified	_SESGGLNW_					0	0	0		ENSG00000072041|ENST00000266682|SLC6A15;nc|ENSG00000072041|Q9H2J7-3|SLC6A15;nc|ENSG00000072041|Q9H2J7-2|SLC6A15;ENSG00000197106|ENST00000331565|SLC6A17	ENSG00000072041|ENST00000266682|SLC6A15	ENSG00000072041|ENST00000266682|SLC6A15	MULTI-MSMS	A375_MHC_IP_R2	2	849.806396484375	1	849.373723	848.366446	-0.7507	-0.00063763	0.099782	8.4752E-05	-0.65092	-0.00055288	849.3737739547383	65.142	1.0144	65.88	65.511	66.526	0.73811					49	19	4	0	0	0	0.23604	1	24889	24889		64.236	28.192	1	23879000			47608	1525	34576	34856	46552	46552					-0.06380213475813434
SESGGLNW	8	Unmodified	_SESGGLNW_					0	0	0		ENSG00000072041|ENST00000266682|SLC6A15;nc|ENSG00000072041|Q9H2J7-3|SLC6A15;nc|ENSG00000072041|Q9H2J7-2|SLC6A15;ENSG00000197106|ENST00000331565|SLC6A17	ENSG00000072041|ENST00000266682|SLC6A15	ENSG00000072041|ENST00000266682|SLC6A15	MULTI-MATCH	A375_MHC_IP_R1	1		1	849.373723	848.366446	-0.48155	-0.00040901	0.42342	0.00035964	-0.058126	-4.9371E-05	849.3740743858112	65.955	0.96344	65.955	65.565	66.529	0	0.037279	0.00013735	NaN	64.236	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25526000			47609	1525	34576	34856							-0.06380213475813434
SESGHYYCY	9	Unmodified	_SESGHYYCY_					0	0	0		nc|ENSG00000118369|Q9P2H5-2|USP35;ENSG00000118369|ENST00000529308|USP35	nc|ENSG00000118369|Q9P2H5-2|USP35	nc|ENSG00000118369|Q9P2H5-2|USP35	MSMS	A375_MHC_IP_R2	2	554.7053833007812	2	554.705657	1107.39676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.079	1	24.723	24.223	25.223	0.64368								0	0	0	0.15486	1	7851	7851		4.756	0	1				47610	3538	34577	34857	46553	46553					-0.15264222872929167
SESGHYYSY	9	Unmodified	_SESGHYYSY_					0	0	0		ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000170185|Q8NB14-2|USP38	ENSG00000170185|ENST00000307017|USP38	ENSG00000170185|ENST00000307017|USP38	MULTI-SECPEP	A375_MHC_IP_R2	2	547.1163330078125	2	546.717079	1091.4196	-0.789	-0.00043136	0.27955	0.00015283	-0.50945	-0.00027852	546.7172744835515	27.698	0.30236	28.376	28.251	28.553	0.67857					8	5	2	0	0	0	0.1277	1	9538	9538		64.236	13.381	1	2319900			47611	7479	34578	34858	46554	46554					-0.12244880483808629
SESGHYYSY	9	Unmodified	_SESGHYYSY_					0	0	0		ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000170185|Q8NB14-2|USP38	ENSG00000170185|ENST00000307017|USP38	ENSG00000170185|ENST00000307017|USP38	MULTI-MATCH	A375_MHC_IP_R1	1		2	546.717079	1091.4196	-0.58482	-0.00031973	-0.051377	-2.8089E-05	-0.63619	-0.00034782	546.717056715468	28.336	0.35262	28.336	28.138	28.491	0	-0.02026	-0.00019907	NaN	64.236	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2013400			47612	7479	34578	34858							-0.12244880483808629
SESGINYEI	9	Unmodified	_SESGINYEI_					0	0	0		ENST00000466152.5_1_20:49557422-49575060:-|nuORF;ENSG00000000419|ENST00000371588|DPM1	ENST00000466152.5_1_20:49557422-49575060:-|nuORF	ENST00000466152.5_1_20:49557422-49575060:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1011.8624267578125	1	1011.46293	1010.45566	0.69104	0.00069896	-0.50183	-0.00050758	0.18921	0.00019138	1011.4622342688182	69.608	0.40565	69.608	69.377	69.782	0					12	7	2	0	0	0	0.0098183	1	25277	25277		114.65	46.568	1	1731100			47613	838	34579	34859	46555	46555					-0.04915423306954381
SESGLGFPRY	10	Unmodified	_SESGLGFPRY_					0	0	0			REV__nc|ENSG00000163125|Q5VT52-5|RPRD2	REV__nc|ENSG00000163125|Q5VT52-5|RPRD2	MSMS	A375_MHC_IP_R2	2	556.724365234375	2	556.772188	1111.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.525	1	51.279	50.779	51.779	0.75406								0	0	0	0.14925	1	19002	19002		19.257	1.1106	1		+		47614	20340	34580	34860	46556	46556					-0.02148035424761474
SESGLTPLGY	10	Unmodified	_SESGLTPLGY_					0	0	0		nc|ENSG00000170921|Q9HCD6-4|TANC2;nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;nc|ENSG00000170921|Q9HCD6-3|TANC2;ENST00000581143.1_1_17:61466073-61473304:+|nuORF;ENST00000583545.1_1_17:61432467-61466989:+|nuORF	nc|ENSG00000170921|Q9HCD6-4|TANC2	nc|ENSG00000170921|Q9HCD6-4|TANC2	MULTI-MSMS	A375_MHC_IP_R2	2	1023.5068969726562	1	1023.49932	1022.49204	-0.027331	-2.7974E-05	-0.75197	-0.00076964	-0.7793	-0.00079761	1023.4985891824722	81.815	0.66161	82.558	82.33	82.992	0.74293					17	12	2	0	0	0	0.028981	1	31133	31133		81.89	35.869	1	3879000			47615	7560	34581	34861	46557	46557					-0.018305464102354563
SESGLTPLGY	10	Unmodified	_SESGLTPLGY_					0	0	0		nc|ENSG00000170921|Q9HCD6-4|TANC2;nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;nc|ENSG00000170921|Q9HCD6-3|TANC2;ENST00000581143.1_1_17:61466073-61473304:+|nuORF;ENST00000583545.1_1_17:61432467-61466989:+|nuORF	nc|ENSG00000170921|Q9HCD6-4|TANC2	nc|ENSG00000170921|Q9HCD6-4|TANC2	MULTI-MATCH	A375_MHC_IP_R1	1		1	1023.49932	1022.49204	0.32578	0.00033343	-0.27282	-0.00027924	0.052955	5.42E-05	1023.4990806241198	82.545	0.45625	82.545	82.316	82.772	0	-0.0063865	0.00030202	NaN	81.89	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3821800			47616	7560	34581	34861							-0.018305464102354563
SESHFSERW	9	Unmodified	_SESHFSERW_					0	0	0		nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1	nc|ENSG00000198862|O94822-3|LTN1	nc|ENSG00000198862|O94822-3|LTN1	MULTI-SECPEP	A375_MHC_IP_R1	1	389.26824951171875	3	388.840472	1163.49959	-0.11018	-4.2843E-05	0.30145	0.00011722	0.19127	7.4374E-05	388.8405566242967	30.578	0.60739	30.578	30.351	30.959	0					29	11	3	0	0	0	0.6191	1	9845	9845		22.775	13.231	1	4682300			47617	9354	34582	34862	46558	46558					-0.07562394089927693
SESHFSERW	9	Unmodified	_SESHFSERW_					0	0	0		nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1	nc|ENSG00000198862|O94822-3|LTN1	nc|ENSG00000198862|O94822-3|LTN1	MULTI-SECPEP	A375_MHC_IP_R2	2	389.2526550292969	3	388.840472	1163.49959	-0.47183	-0.00018347	0.36076	0.00014028	-0.11106	-4.3186E-05	388.8406056021741	29.864	0.60721	30.563	30.335	30.942	0.69872					27	11	3	0	0	0	0.76305	1	10504	10504		7.0371	5.7074	1	8370900			47618	9354	34582	34862	46559	46559					-0.07562394089927693
SESHTDLTF	9	Unmodified	_SESHTDLTF_					0	0	0		nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;ENSG00000186416|ENST00000688521|NKRF	nc|ENSG00000186416|O15226|NKRF	nc|ENSG00000186416|O15226|NKRF	MULTI-SECPEP	A375_MHC_IP_R1	1	519.132568359375	2	518.732729	1035.4509	-0.38924	-0.00020191	-0.018849	-9.7775E-06	-0.40809	-0.00021169	518.7326204833745	45.866	0.91096	45.866	45.484	46.395	0					50	17	4	0	0	0	0.040439	1	16029	16029		92.822	56.316	1	22994000			47619	8746	34583	34863	46560	46560					-0.06540307449722604
SESHTDLTF	9	Unmodified	_SESHTDLTF_					0	0	0		nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;ENSG00000186416|ENST00000688521|NKRF	nc|ENSG00000186416|O15226|NKRF	nc|ENSG00000186416|O15226|NKRF	MULTI-SECPEP	A375_MHC_IP_R2	2	518.9960327148438	2	518.732729	1035.4509	-0.80012	-0.00041505	0.064712	3.3568E-05	-0.73541	-0.00038148	518.7326679606782	45.042	1.1185	45.811	45.239	46.357	0.7691					51	21	4	0	0	0	0.05755	1	16747	16747		71.134	43.505	1	23079000			47620	8746	34583	34863	46561	46561					-0.06540307449722604
SESIHIIWDTR	11	Unmodified	_SESIHIIWDTR_					0	0	0		ENST00000372692.8_1_9:131457969-131458062:+|nuORF	ENST00000372692.8_1_9:131457969-131458062:+|nuORF	ENST00000372692.8_1_9:131457969-131458062:+|nuORF	MSMS	A375_MHC_IP_R2	2	678.3892211914062	2	678.848958	1355.68336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.198	1	98.958	98.458	99.458	0.75977								0	0	0	0.16265	1	37258	37258		4.897	1.3005	1				47621	11210	34584	34864	46562	46562					0.01974954620891367
SESIPKDSL	9	Unmodified	_SESIPKDSL_					0	0	0		ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	A375_MHC_IP_R1	1	488.67120361328125	2	488.253297	974.492041	-0.33725	-0.00016466	0.98211	0.00047952	0.64486	0.00031486	488.25320928933087	34.43	0.60554	34.43	34.154	34.759	0					33	11	5	0	0	0	0.28216	1	11290	11290		41.84	24.897	1	5729800			47622	5434	34585	34865	46563	46563					0.0037745358977190335
SESIRIGLW	9	Unmodified	_SESIRIGLW_					0	0	0			REV__ENSG00000156273|ENST00000286800|BACH1	REV__ENSG00000156273|ENST00000286800|BACH1	MULTI-SECPEP	A375_MHC_IP_R2	2	531.205078125	2	530.792924	1059.57129	-0.54753	-0.00029062	-0.63964	-0.00033952	-1.1872	-0.00063014	530.792807911478	84.177	0.56345	84.916	84.611	85.175	0.73962					13	10	2	0	0	0	0.63749	1	31982	31982		27.629	27.629	1	2210000	+		47623	19974	34586	34866	46564	46564					0.04389145334562272
SESLGILKDY	10	Unmodified	_SESLGILKDY_					0	0	0		ENSG00000138386|ENST00000337386|NAB1;nc|ENSG00000138386|Q13506-2|NAB1	ENSG00000138386|ENST00000337386|NAB1	ENSG00000138386|ENST00000337386|NAB1	MULTI-MSMS	A375_MHC_IP_R2	2	375.604736328125	3	375.532645	1123.5761	-0.011075	-4.159E-06	0.32752	0.00012299	0.31644	0.00011883	375.53271265740256	23.439	0.252	24.069	23.928	24.18	0.63014					6	4	2	0	0	0	0.70496	1	7600	7600		5.7834	0.38072	1	2675700			47624	4988	34587	34867	46565	46565					0.019259846866816588
SESLLRGIY	9	Unmodified	_SESLLRGIY_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000550578.1_1_12:53547103-53547616:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF;ENST00000584054.5_1_17:7476159-7478064:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-SECPEP	A375_MHC_IP_R1	1	519.6849975585938	2	519.284931	1036.55531	-0.52431	-0.00027227	0.18375	9.5421E-05	-0.34056	-0.00017685	519.2855284802356	73.572	0.75966	73.572	73.235	73.995	0					38	13	3	0	0	0	0.20451	1	26809	26809		57.722	19.748	1	4556100			47625	6498;13685	34588	34868	46566	46566					0.03849439097666618
SESLLRGIY	9	Unmodified	_SESLLRGIY_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000550578.1_1_12:53547103-53547616:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF;ENST00000584054.5_1_17:7476159-7478064:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.684326171875	2	519.284931	1036.55531	-0.746	-0.00038739	-0.54767	-0.0002844	-1.2937	-0.00067178	519.2852915510335	72.725	0.76349	73.461	73.175	73.938	0.73541					35	14	3	0	0	0	0.20451	1	27602	27602		49.554	21.925	1	5326300			47626	6498;13685	34588	34868	46567	46567					0.03849439097666618
SESLLRGIYAY	11	Unmodified	_SESLLRGIYAY_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000550578.1_1_12:53547103-53547616:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF;ENST00000584054.5_1_17:7476159-7478064:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-SECPEP	A375_MHC_IP_R1	1	636.734375	2	636.335153	1270.65575	-0.57865	-0.00036822	0.79734	0.00050738	0.21869	0.00013916	636.3350385156064	89.011	0.81367	89.011	88.612	89.426	0					32	15	3	0	0	0	0.065145	1	32672	32672		81.915	52.834	1	6989300			47627	6498;13685	34589	34869	46568	46568					0.03125051360689213
SESLLRGIYAY	11	Unmodified	_SESLLRGIYAY_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000550578.1_1_12:53547103-53547616:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF;ENST00000584054.5_1_17:7476159-7478064:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	A375_MHC_IP_R2	2	636.7349853515625	2	636.335153	1270.65575	-0.71934	-0.00045774	0.21289	0.00013547	-0.50645	-0.00032227	636.3349434954739	88.279	0.86211	89.011	88.519	89.381	0.7318					35	16	3	0	0	0	0.036274	1	33572	33572		81.915	49.13	1	5117900			47628	6498;13685	34589	34869	46569	46569					0.03125051360689213
SESLPKEAF	9	Unmodified	_SESLPKEAF_					0	0	0		nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000539659.5_1_12:14576849-14613468:+|nuORF;ENST00000541654.1_1_12:14538317-14613468:+|nuORF;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	nc|ENSG00000171681|Q6VMQ6-5|ATF7IP	nc|ENSG00000171681|Q6VMQ6-5|ATF7IP	MULTI-SECPEP	A375_MHC_IP_R1	1	504.6556396484375	2	504.25584	1006.49713	-0.37357	-0.00018838	0.34834	0.00017565	-0.025232	-1.2723E-05	504.25589953450094	46.355	0.7068	46.355	45.738	46.444	0					24	13	4	0	0	0	0.05217	1	16230	16230		79.596	31.25	1	7803200			47629	7628	34590	34870	46570	46570					-0.005862425476038879
SESLPKEAF	9	Unmodified	_SESLPKEAF_					0	0	0		nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000539659.5_1_12:14576849-14613468:+|nuORF;ENST00000541654.1_1_12:14538317-14613468:+|nuORF;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	nc|ENSG00000171681|Q6VMQ6-5|ATF7IP	nc|ENSG00000171681|Q6VMQ6-5|ATF7IP	MULTI-SECPEP	A375_MHC_IP_R2	2	504.66180419921875	2	504.25584	1006.49713	-0.71238	-0.00035922	0.91615	0.00046197	0.20377	0.00010275	504.2561930033464	45.526	1.4212	46.291	45.031	46.453	0.76518					42	27	4	0	0	0	0.13244	1	17085	17085		51.415	11.466	1	8823700			47630	7628	34590	34870	46571	46571					-0.005862425476038879
SESLPVRTL	9	Unmodified	_SESLPVRTL_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-SECPEP	A375_MHC_IP_R1	1	501.6846923828125	2	501.284931	1000.55531	-0.56908	-0.00028527	0.28761	0.00014417	-0.28147	-0.0001411	501.2849789689694	52.971	0.40334	52.971	52.796	53.199	0					12	7	2	0	0	0	0.5212	1	18899	18899		26.268	8.1218	1	2278400			47631	1610	34591	34871	46572	46572					0.05505439097669296
SESLPVRTL	9	Unmodified	_SESLPVRTL_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-SECPEP	A375_MHC_IP_R2	2	501.68438720703125	2	501.284931	1000.55531	-0.96123	-0.00048185	0.15177	7.6081E-05	-0.80946	-0.00040577	501.28495592148766	52.155	0.30394	52.907	52.729	53.032	0.75225					9	5	2	0	0	0	0.59098	1	19679	19679		27.629	7.1752	1	2640400			47632	1610	34591	34871	46573	46573					0.05505439097669296
SESLVHESW	9	Unmodified	_SESLVHESW_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	A375_MHC_IP_R1	1	537.6477661132812	2	537.248546	1072.48254	-0.761	-0.00040885	0.095359	5.1231E-05	-0.66564	-0.00035761	537.2483345913587	52.497	0.4575	52.497	52.287	52.744	0					15	8	3	0	0	0	0.0098409	1	18696	18696		115.69	81.59	1	2331300			47633	2144	34592	34872	46574	46574					-0.050803146957377976
SESMEEDCSC	10	Unmodified	_SESMEEDCSC_					0	0	0		nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-8|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3;ENSG00000160584|ENST00000445177|SIK3;ENST00000480468.1_1_11:116728475-116732017:-|nuORF;nc|ENSG00000160584|Q9Y2K2-6|SIK3	nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-6|SIK3	nc|ENSG00000160584|Q9Y2K2-6|SIK3	MULTI-SECPEP	A375_MHC_IP_R2	2	559.6557006835938	2	560.167389	1118.32023	-0.66831	-0.00037437	-2.0149	-0.0011287	-2.6832	-0.0015031	560.1685124747687	80.37	0.15159	81.115	81.011	81.163	0.74474					4	2	2	0	0	0	0.94862	1	30518	30518		0.40072	0	1	840460			47634	6425;14712	34593	34873	46575	46575					-0.23420150546712648
SESNFARAY	9	Unmodified	_SESNFARAY_					0	0	0		ENST00000547912.1_1_12:56676173-56676410:-|nuORF;ENST00000547449.1_1_12:56676173-56676733:-|nuORF;ENST00000546621.5_1_12:56668606-56679804:-|nuORF;ENSG00000062485|ENST00000351328|CS	ENST00000547912.1_1_12:56676173-56676410:-|nuORF	ENST00000547912.1_1_12:56676173-56676410:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	523.140625	2	522.740888	1043.46722	-0.56643	-0.00029609	0.98918	0.00051709	0.42275	0.00022099	522.7409171144701	31.28	0.81075	31.28	30.754	31.565	0					34	15	3	0	0	0	0.006265	1	9975	9975		157.8	105.53	1	8895500			47635	1329	34594	34874	46576	46576					-0.0527718149296561
SESNFARAY	9	Unmodified	_SESNFARAY_					0	0	0		ENST00000547912.1_1_12:56676173-56676410:-|nuORF;ENST00000547449.1_1_12:56676173-56676733:-|nuORF;ENST00000546621.5_1_12:56668606-56679804:-|nuORF;ENSG00000062485|ENST00000351328|CS	ENST00000547912.1_1_12:56676173-56676410:-|nuORF	ENST00000547912.1_1_12:56676173-56676410:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	523.2050170898438	2	522.740888	1043.46722	-0.5897	-0.00030826	-0.17528	-9.1627E-05	-0.76498	-0.00039989	522.7407132933059	30.612	0.55502	31.33	31.114	31.669	0.71857					26	10	3	0	0	0	0.017727	1	10835	10835		86.332	64.585	1	8964900			47636	1329	34594	34874	46577	46577					-0.0527718149296561
SESNFSPKF	9	Unmodified	_SESNFSPKF_					0	0	0		nc|ENSG00000170502|Q9BW91-2|NUDT9;ENSG00000170502|ENST00000302174|NUDT9	nc|ENSG00000170502|Q9BW91-2|NUDT9	nc|ENSG00000170502|Q9BW91-2|NUDT9	MULTI-MSMS	A375_MHC_IP_R1	1	522.2339477539062	2	521.745639	1041.47673	-0.17435	-9.0966E-05	-0.59079	-0.00030824	-0.76514	-0.00039921	521.7454071052822	48.269	0.5065	48.269	47.97	48.476	0					15	9	2	0	0	0	0.027818	1	17001	17001		76.825	44.519	1	3405900			47637	7514	34595	34875	46578	46578					-0.04235413207425154
SESNFSPKF	9	Unmodified	_SESNFSPKF_					0	0	0		nc|ENSG00000170502|Q9BW91-2|NUDT9;ENSG00000170502|ENST00000302174|NUDT9	nc|ENSG00000170502|Q9BW91-2|NUDT9	nc|ENSG00000170502|Q9BW91-2|NUDT9	MULTI-SECPEP	A375_MHC_IP_R2	2	522.1452026367188	2	521.745639	1041.47673	-0.43764	-0.00022834	-0.33666	-0.00017565	-0.77431	-0.00040399	521.7454786653608	47.438	0.76486	48.2	47.715	48.48	0.76128					22	14	2	0	0	0	0.23894	1	17816	17816		47.594	27.141	1	4514000			47638	7514	34595	34875	46579	46579					-0.04235413207425154
SESNGEFFF	9	Unmodified	_SESNGEFFF_					0	0	0		ENSG00000108506|ENST00000251334|INTS2;nc|ENSG00000108506|Q9H0H0|INTS2	ENSG00000108506|ENST00000251334|INTS2	ENSG00000108506|ENST00000251334|INTS2	MULTI-MSMS	A375_MHC_IP_R2	2	1063.437255859375	1	1063.43672	1062.42944	0.2271	0.00024151	0.81631	0.00086809	1.0434	0.0011096	1063.4361444434396	110.43	0.30751	111.17	110.94	111.24	0.73692					6	5	2	0	0	0	0.018261	1	41649	41649		85.642	29.464	1	1237600			47639	2806	34596	34876	46580	46580					-0.09927692478436256
SESNGEFFF	9	Unmodified	_SESNGEFFF_					0	0	0		ENSG00000108506|ENST00000251334|INTS2;nc|ENSG00000108506|Q9H0H0|INTS2	ENSG00000108506|ENST00000251334|INTS2	ENSG00000108506|ENST00000251334|INTS2	MULTI-MATCH	A375_MHC_IP_R1	1		1	1063.43672	1062.42944	0.27106	0.00028826	1.3231	0.001407	1.5942	0.0016953	1063.4370688158058	111.21	0.25665	111.21	111.05	111.31	0	0.019805	0.00025085	NaN	85.642	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1530400			47640	2806	34596	34876							-0.09927692478436256
SESNIIRHY	9	Unmodified	_SESNIIRHY_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-SECPEP	A375_MHC_IP_R1	1	373.92437744140625	3	373.524484	1117.55162	0.29272	0.00010934	-0.0064072	-2.3933E-06	0.28631	0.00010694	373.5244077696135	24.861	0.45686	24.861	24.647	25.104	0					13	8	3	0	0	0	0.3213	1	7165	7165		34.932	19.684	1	9164300			47641	8951	34597	34877	46581	46581					-0.0024523067620521033
SESNIIRHY	9	Unmodified	_SESNIIRHY_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-SECPEP	A375_MHC_IP_R2	2	373.92431640625	3	373.524484	1117.55162	0.11076	4.1371E-05	-0.23556	-8.7986E-05	-0.1248	-4.6615E-05	373.52444409775	24.238	0.25396	24.882	24.755	25.009	0.64368					10	4	3	0	0	0	0.083712	1	7936	7936		59.368	40.006	1	13797000			47642	8951	34597	34877	46582	46582					-0.0024523067620521033
SESNYLHV	8	Unmodified	_SESNYLHV_					0	0	0		FKRP|p.H412Y|1|0.19|ENSG00000181027|chr19:46756684-46756684|C/T|missense_variant	FKRP|p.H412Y|1|0.19|ENSG00000181027|chr19:46756684-46756684|C/T|missense_variant	FKRP|p.H412Y|1|0.19|ENSG00000181027|chr19:46756684-46756684|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	474.6324157714844	2	474.724707	947.43486	-0.46078	-0.00021874	0.1997	9.4804E-05	-0.26108	-0.00012394	474.72474613899743	34.835	0.61034	34.835	34.608	35.218	0					19	11	2	0	0	0	0.69583	1	11620	11620		36.044	1.9418	1	22010000			47643	14003	34598	34878	46583	46583					-0.040959688959446794
SESPAIKEY	9	Unmodified	_SESPAIKEY_					0	0	0			REV__MUC16|p.R3931K|1|0.28|ENSG00000181143|chr19:8964978-8964978|C/T|missense_variant	REV__MUC16|p.R3931K|1|0.28|ENSG00000181143|chr19:8964978-8964978|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	512.162841796875	2	512.253297	1022.49204	-0.30831	-0.00015793	-0.45039	-0.00023071	-0.7587	-0.00038865	512.2530975291785	51.682	0.40573	51.682	51.373	51.778	0					12	7	2	0	0	0	0.38578	1	18363	18363		34.402	3.7652	1	1315200	+		47644	27051	34599	34879	46584	46584					-0.01830546410246825
SESPEPGQRTF	11	Unmodified	_SESPEPGQRTF_					0	0	0		ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	MULTI-MSMS	A375_MHC_IP_R1	1	618.1884155273438	2	617.788566	1233.56258	-0.26201	-0.00016187	-0.12772	-7.8905E-05	-0.38973	-0.00024077	617.7885843179238	28.516	0.30453	28.516	28.39	28.694	0					9	5	2	0	0	0	0.041676	1	8828	8828		80.896	48.11	1	3050200			47645	6185	34600	34880	46585	46585					-0.04485873092562542
SESPEPGQRTF	11	Unmodified	_SESPEPGQRTF_					0	0	0		ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	MULTI-MSMS	A375_MHC_IP_R2	2	618.1885375976562	2	617.788566	1233.56258	-0.73544	-0.00045435	0.13633	8.4221E-05	-0.59912	-0.00037013	617.7886331536716	27.915	0.35546	28.594	28.401	28.757	0.67857					13	6	3	0	0	0	0.062056	1	9623	9623		77.049	47.967	1	3522700			47646	6185	34600	34880	46586	46586					-0.04485873092562542
SESPFSPPHP	10	Unmodified	_SESPFSPPHP_					0	0	0		ENSG00000106571|ENST00000395925|GLI3	ENSG00000106571|ENST00000395925|GLI3	ENSG00000106571|ENST00000395925|GLI3	MSMS	A375_MHC_IP_R2	2	541.1636352539062	2	541.251089	1080.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.851	1	45.62	45.12	46.12	0.7691								0	0	0	0.15158	1	16751	16751		14.838	1.7958	1				47647	2699	34601	34881	46587	46587					-0.04940010833138331
SESPIEKVL	9	Unmodified	_SESPIEKVL_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-MSMS	A375_MHC_IP_R1	1	501.67901611328125	2	501.279315	1000.54408	-0.27082	-0.00013575	0.29794	0.00014935	0.027123	1.3596E-05	501.279295621616	62.546	1.6898	62.546	62.097	63.786	0					86	32	4	0	0	0	0.0099679	1	22608	22608		121.53	35.893	1	10837000			47648	4343	34602	34882	46588	46588					0.04382617003534506
SESPIVVVL	9	Unmodified	_SESPIVVVL_					0	0	0		nc|ENSG00000140612|P67812-3|SEC11A;ENST00000585864.1_1_18:56807180-56819918:+|nuORF;nc|ENSG00000140612|P67812-2|SEC11A;nc|ENSG00000140612|P67812-4|SEC11A;ENSG00000140612|ENST00000268220|SEC11A;ENSG00000166562|ENST00000587834|SEC11C	nc|ENSG00000140612|P67812-3|SEC11A	nc|ENSG00000140612|P67812-3|SEC11A	MULTI-MSMS	A375_MHC_IP_R1	1	472.1790771484375	2	471.778951	941.543348	-0.4669	-0.00022027	0.42764	0.00020175	-0.039253	-1.8519E-05	471.77900167763835	76.191	0.86047	76.191	75.915	76.776	0					33	16	4	0	0	0	0.042197	1	27762	27762		67.344	22.937	1	3056400			47649	14642	34603	34883	46589	46589					0.070238223544834
SESPIVVVL	9	Unmodified	_SESPIVVVL_					0	0	0		nc|ENSG00000140612|P67812-3|SEC11A;ENST00000585864.1_1_18:56807180-56819918:+|nuORF;nc|ENSG00000140612|P67812-2|SEC11A;nc|ENSG00000140612|P67812-4|SEC11A;ENSG00000140612|ENST00000268220|SEC11A;ENSG00000166562|ENST00000587834|SEC11C	nc|ENSG00000140612|P67812-3|SEC11A	nc|ENSG00000140612|P67812-3|SEC11A	MULTI-MSMS	A375_MHC_IP_R1	1	943.407470703125	1	942.550625	941.543348	0.175	0.00016494	-0.029216	-2.7538E-05	0.14578	0.0001374	942.5505705763904	117.69	1.1146	117.69	117.21	118.32	0					63	21	4	0	0	0	0.0093345	1	43367	43367		104.8	51.224	1	389850000			47650	14642	34603	34883	46590	46590					0.070238223544834
SESPIVVVL	9	Unmodified	_SESPIVVVL_					0	0	0		nc|ENSG00000140612|P67812-3|SEC11A;ENST00000585864.1_1_18:56807180-56819918:+|nuORF;nc|ENSG00000140612|P67812-2|SEC11A;nc|ENSG00000140612|P67812-4|SEC11A;ENSG00000140612|ENST00000268220|SEC11A;ENSG00000166562|ENST00000587834|SEC11C	nc|ENSG00000140612|P67812-3|SEC11A	nc|ENSG00000140612|P67812-3|SEC11A	MULTI-SECPEP	A375_MHC_IP_R1	1	472.1789245605469	2	471.778951	941.543348	-0.24002	-0.00011323	-0.11895	-5.6117E-05	-0.35896	-0.00016935	471.7788706382999	117.68	0.71063	117.68	117.31	118.02	0					32	13	3	0	0	0	0.043556	1	43183	43183		77.984	20.513	1	30243000			47651	14642	34603	34883	46591	46591					0.070238223544834
SESPIVVVL	9	Unmodified	_SESPIVVVL_					0	0	0		nc|ENSG00000140612|P67812-3|SEC11A;ENST00000585864.1_1_18:56807180-56819918:+|nuORF;nc|ENSG00000140612|P67812-2|SEC11A;nc|ENSG00000140612|P67812-4|SEC11A;ENSG00000140612|ENST00000268220|SEC11A;ENSG00000166562|ENST00000587834|SEC11C	nc|ENSG00000140612|P67812-3|SEC11A	nc|ENSG00000140612|P67812-3|SEC11A	MULTI-MSMS	A375_MHC_IP_R2	2	472.1785888671875	2	471.778951	941.543348	-0.61578	-0.00029051	0.12272	5.7895E-05	-0.49306	-0.00023261	471.7789136396052	75.275	0.76323	76.013	75.722	76.485	0.73837					22	14	2	0	0	0	0.067501	1	28534	28534		57.471	13.064	1	2692500			47652	14642	34603	34883	46592	46592					0.070238223544834
SESPIVVVL	9	Unmodified	_SESPIVVVL_					0	0	0		nc|ENSG00000140612|P67812-3|SEC11A;ENST00000585864.1_1_18:56807180-56819918:+|nuORF;nc|ENSG00000140612|P67812-2|SEC11A;nc|ENSG00000140612|P67812-4|SEC11A;ENSG00000140612|ENST00000268220|SEC11A;ENSG00000166562|ENST00000587834|SEC11C	nc|ENSG00000140612|P67812-3|SEC11A	nc|ENSG00000140612|P67812-3|SEC11A	MULTI-MSMS	A375_MHC_IP_R2	2	943.637451171875	1	942.550625	941.543348	-0.052785	-4.9753E-05	-0.099488	-9.3772E-05	-0.15227	-0.00014353	942.5504592111624	116.59	1.2686	117.25	116.92	118.19	0.65961					75	24	5	0	0	0	0.03063	1	44121	44121		74.423	23.568	1	542870000			47653	14642	34603	34883	46593	46593					0.070238223544834
SESPIVVVL	9	Unmodified	_SESPIVVVL_					0	0	0		nc|ENSG00000140612|P67812-3|SEC11A;ENST00000585864.1_1_18:56807180-56819918:+|nuORF;nc|ENSG00000140612|P67812-2|SEC11A;nc|ENSG00000140612|P67812-4|SEC11A;ENSG00000140612|ENST00000268220|SEC11A;ENSG00000166562|ENST00000587834|SEC11C	nc|ENSG00000140612|P67812-3|SEC11A	nc|ENSG00000140612|P67812-3|SEC11A	MULTI-SECPEP	A375_MHC_IP_R2	2	472.1788024902344	2	471.778951	941.543348	-0.42798	-0.00020191	-0.0086399	-4.0761E-06	-0.43662	-0.00020599	471.7788860930797	116.59	0.8652	117.25	117.02	117.89	0.65962					35	16	3	0	0	0	0.01139	1	44069	44069		117.6	43.202	1	39364000			47654	14642	34603	34883	46594	46594					0.070238223544834
SESPVERPL	9	Unmodified	_SESPVERPL_					0	0	0		nc|ENSG00000096063|Q96SB4-4|SRPK1;ENSG00000096063|ENST00000373825|SRPK1;nc|ENSG00000096063|Q96SB4-3|SRPK1	nc|ENSG00000096063|Q96SB4-4|SRPK1	nc|ENSG00000096063|Q96SB4-4|SRPK1	MULTI-SECPEP	A375_MHC_IP_R1	1	506.71875	2	507.266739	1012.51892	-0.35427	-0.00017971	-1.3471	-0.00068333	-1.7014	-0.00086304	507.26591363539694	33.791	0.60548	33.791	33.648	34.253	0					14	11	2	0	0	0	0.67539	1	11051	11051		21.537	5.7688	1	935220			47655	2053	34604	34884	46595	46595					0.013165622009523759
SESPVERPL	9	Unmodified	_SESPVERPL_					0	0	0		nc|ENSG00000096063|Q96SB4-4|SRPK1;ENSG00000096063|ENST00000373825|SRPK1;nc|ENSG00000096063|Q96SB4-3|SRPK1	nc|ENSG00000096063|Q96SB4-4|SRPK1	nc|ENSG00000096063|Q96SB4-4|SRPK1	MULTI-SECPEP	A375_MHC_IP_R2	2	506.9273986816406	2	507.266739	1012.51892	-0.88699	-0.00044994	-1.7723	-0.00089905	-2.6593	-0.001349	507.26558684948475	33.077	0.40814	33.829	33.686	34.095	0.75225					12	7	2	0	0	0	0.72623	1	11845	11845		18.373	13.142	1	1796400			47656	2053	34604	34884	46596	46596					0.013165622009523759
SESQGPPRAF	10	Unmodified	_SESQGPPRAF_					0	0	0		ENST00000544724.5_1_12:122337523-122354214:+|nuORF;nc|ENSG00000256950|O00233-2|PSMD9;ENSG00000110801|ENST00000541212|PSMD9	ENST00000544724.5_1_12:122337523-122354214:+|nuORF	ENST00000544724.5_1_12:122337523-122354214:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	538.2108154296875	2	538.261988	1074.50942	-0.65578	-0.00035298	0.84569	0.0004552	0.18991	0.00010222	538.2623172731671	31.412	0.50721	31.412	31.262	31.769	0					14	9	2	0	0	0	0.70651	1	10161	10161		9.3831	0.78985	1	1150200			47657	2949	34605	34885	46597	46597					-0.024852060845887536
SESQNRESCDM	11	Unmodified	_SESQNRESCDM_					0	0	0		ENSG00000176542|ENST00000316407|USF3	ENSG00000176542|ENST00000316407|USF3	ENSG00000176542|ENST00000316407|USF3	MULTI-MSMS	A375_MHC_IP_R1	1	643.64306640625	2	643.242809	1284.47106	-0.041709	-2.6829E-05	-0.40777	-0.0002623	-0.44948	-0.00028912	643.2430355181453	114.73	1.5225	114.73	114.31	115.83	0					74	29	4	0	0	0	0.7362	1	42208	42208		2.9952	0	1	19237000			47658	8024	34606	34886	46598	46598					-0.15979247843711164
SESQNRESCDM	11	Unmodified	_SESQNRESCDM_					0	0	0		ENSG00000176542|ENST00000316407|USF3	ENSG00000176542|ENST00000316407|USF3	ENSG00000176542|ENST00000316407|USF3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	643.242809	1284.47106	-0.50253	-0.00032325	-0.90337	-0.00058109	-1.4059	-0.00090434	643.242789549303	114.08	1.2629	114.79	114.38	115.65	0.70984	0.026134	-0.00032728	NaN	2.9952	84	24	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29928000			47659	8024	34606	34886							-0.15979247843711164
SESQTLDKVY	10	Unmodified	_SESQTLDKVY_					0	0	0		nc|ENSG00000064012|Q14790-8|CASP8;nc|ENSG00000064012|Q14790-7|CASP8;ENST00000339403.6_1_2:202123080-202141717:+|nuORF;nc|ENSG00000064012|Q14790-2|CASP8;ENSG00000064012|ENST00000673742|CASP8;nc|ENSG00000064012|Q14790-4|CASP8;nc|ENSG00000064012|Q14790-9|CASP8	nc|ENSG00000064012|Q14790-8|CASP8	nc|ENSG00000064012|Q14790-8|CASP8	MULTI-SECPEP	A375_MHC_IP_R1	1	586.0283203125	2	585.287868	1168.56118	-0.65244	-0.00038186	0.18164	0.00010631	-0.4708	-0.00027555	585.2879614629627	41.465	0.30512	41.465	41.266	41.571	0					8	5	2	0	0	0	0.88918	1	14347	14347		13.042	0	1	1591800			47660	1344	34607	34887	46599	46599					-0.01635507181322282
SESQTLDKVY	10	Unmodified	_SESQTLDKVY_					0	0	0		nc|ENSG00000064012|Q14790-8|CASP8;nc|ENSG00000064012|Q14790-7|CASP8;ENST00000339403.6_1_2:202123080-202141717:+|nuORF;nc|ENSG00000064012|Q14790-2|CASP8;ENSG00000064012|ENST00000673742|CASP8;nc|ENSG00000064012|Q14790-4|CASP8;nc|ENSG00000064012|Q14790-9|CASP8	nc|ENSG00000064012|Q14790-8|CASP8	nc|ENSG00000064012|Q14790-8|CASP8	MULTI-MATCH	A375_MHC_IP_R2	2		2	585.287868	1168.56118	-0.66104	-0.0003869	0.89016	0.000521	0.22912	0.0001341	585.2882780962476	40.74	0.25514	41.515	41.335	41.59	0.77451	0.025142	0.00029042	NaN	13.042	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1751400			47661	1344	34607	34887							-0.01635507181322282
SESRPKNQCY	10	Unmodified	_SESRPKNQCY_					0	0	0			REV__nc|ENSG00000126217|O15068-8|MCF2L	REV__nc|ENSG00000126217|O15068-8|MCF2L	MULTI-MSMS	A375_MHC_IP_R1	1	405.2557067871094	3	404.520633	1210.54007	-0.45365	-0.00018351	1.4105	0.00057059	0.95688	0.00038708	404.5213251767187	61.54	0.66387	61.54	61.279	61.943	0					31	12	3	0	0	0	0.6502	1	22208	22208		10.899	0	1	5211200	+		47662	27208	34608	34888	46600	46600					-0.05677795761835114
SESRPKNQCY	10	Unmodified	_SESRPKNQCY_					0	0	0			REV__nc|ENSG00000126217|O15068-8|MCF2L	REV__nc|ENSG00000126217|O15068-8|MCF2L	MULTI-MATCH	A375_MHC_IP_R2	2		3	404.520633	1210.54007	-0.28667	-0.00011596	0.43768	0.00017705	0.15102	6.109E-05	404.5207472688612	60.937	0.85897	61.682	61.211	62.07	0.74504	0.071117	-0.00069543	NaN	10.899	39	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9222200	+		47663	27208	34608	34888							-0.05677795761835114
SESRVKLFY	9	Unmodified	_SESRVKLFY_					0	0	0		nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9	nc|ENSG00000088387|Q9BZ29-3|DOCK9	nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-SECPEP	A375_MHC_IP_R2	2	565.1218872070312	2	564.806031	1127.59751	-0.32781	-0.00018515	-0.067449	-3.8095E-05	-0.39526	-0.00022325	564.805623198168	46.528	0.7112	47.293	46.855	47.567	0.76518					22	12	3	0	0	0	0.69504	1	17384	17384		12.532	4.6214	1	3324200			47664	1892	34609	34889	46601	46601					0.038814145060541705
SESRVNTEF	9	Unmodified	_SESRVNTEF_					0	0	0		ENST00000439176.5_1_5:60224765-60240887:-|nuORF	ENST00000439176.5_1_5:60224765-60240887:-|nuORF	ENST00000439176.5_1_5:60224765-60240887:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	534.6788940429688	2	534.751453	1067.48835	-0.78035	-0.00041729	2.1236	0.0011356	1.3433	0.00071833	534.7525179025994	78.018	0.25339	78.761	78.676	78.929	0.74294					6	4	2	0	0	0	0.6324	1	29609	29609		13.042	2.2185	1	1163300			47665	11959	34610	34890	46602	46602					-0.04269216184070501
SESSLIIKRL	10	Unmodified	_SESSLIIKRL_					0	0	0		ENSG00000113971|ENST00000337331|NPHP3;nc|ENSG00000113971|Q7Z494-6|NPHP3;nc|ENSG00000113971|Q7Z494-3|NPHP3	ENSG00000113971|ENST00000337331|NPHP3	ENSG00000113971|ENST00000337331|NPHP3	MULTI-SECPEP	A375_MHC_IP_R1	1	382.9679870605469	3	382.567801	1144.68157	0.7256	0.00027759	-0.24651	-9.4308E-05	0.47909	0.00018328	382.56767593362804	49.418	0.45707	49.418	49.235	49.692	0					16	8	3	0	0	0	0.92445	1	17523	17523		14.218	3.3192	1	1912400			47666	3189	34611	34891	46603	46603					0.11501945602981323
SESSLIIKRL	10	Unmodified	_SESSLIIKRL_					0	0	0		ENSG00000113971|ENST00000337331|NPHP3;nc|ENSG00000113971|Q7Z494-6|NPHP3;nc|ENSG00000113971|Q7Z494-3|NPHP3	ENSG00000113971|ENST00000337331|NPHP3	ENSG00000113971|ENST00000337331|NPHP3	MULTI-MATCH	A375_MHC_IP_R2	2		3	382.567801	1144.68157	-0.09118	-3.4882E-05	-0.10813	-4.1368E-05	-0.19931	-7.625E-05	382.5677331617109	48.441	0.40363	49.199	49.03	49.434	0.75736	-0.10964	0.00010041	NaN	14.218	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2101400			47667	3189	34611	34891							0.11501945602981323
SESSWSLRRI	10	Unmodified	_SESSWSLRRI_					0	0	0		nc|ENSG00000101199|Q8N6T3-4|ARFGAP1	nc|ENSG00000101199|Q8N6T3-4|ARFGAP1	nc|ENSG00000101199|Q8N6T3-4|ARFGAP1	MULTI-MSMS	A375_MHC_IP_R2	2	407.95068359375	3	407.550921	1219.63093	-0.0925	-3.7698E-05	-0.26108	-0.00010641	-0.35358	-0.0001441	407.5507433327945	44.663	0.35551	45.432	45.239	45.594	0.7691					10	6	2	0	0	0	0.70312	1	16697	16697		10.899	0.37148	1	2114300			47668	14512	34612	34892	46604	46604					0.029904162779757826
SESTDQYF	8	Unmodified	_SESTDQYF_					0	0	0			REV__nc|ENSG00000035664|Q9UIK4-2|DAPK2	REV__nc|ENSG00000035664|Q9UIK4-2|DAPK2	MSMS	A375_MHC_IP_R2	2	488.6529541015625	2	488.698355	975.382156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.688	1	34.44	33.94	34.94	0.75225								0	0	0	0.16876	1	12089	12089		14.582	2.0501	1		+		47669	27096	34613	34893	46605	46605					-0.10651971749416589
SESTQLNW	8	Unmodified	_SESTQLNW_					0	0	0			REV__ENSG00000007545|ENST00000397412|CRAMP1	REV__ENSG00000007545|ENST00000397412|CRAMP1	MULTI-MSMS	A375_MHC_IP_R2	2	483.12164306640625	2	482.722164	963.429775	-0.5383	-0.00025985	-0.30176	-0.00014566	-0.84006	-0.00040552	482.72195061917364	67.684	0.91755	68.42	67.951	68.868	0.73631					40	17	3	0	0	0	0.77603	1	25561	25561		9.3474	9.3474	1	7939300	+		47670	16161	34614	34894	46606	46606					-0.05340272758564879
SESTTHLAF	9	Unmodified	_SESTTHLAF_					0	0	0		ENST00000257663.3_1_7:77423607-77427674:-|nuORF	ENST00000257663.3_1_7:77423607-77427674:-|nuORF	ENST00000257663.3_1_7:77423607-77427674:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	497.1375427246094	2	496.737814	991.461075	-0.222	-0.00011028	-0.22959	-0.00011404	-0.45159	-0.00022432	496.73767688722785	45.767	0.55975	45.767	45.534	46.094	0					24	10	3	0	0	0	0.1277	1	16038	16038		64.236	41.5	1	5055700			47671	10249	34615	34895	46607	46607					-0.03499699724477523
SESTTHLAF	9	Unmodified	_SESTTHLAF_					0	0	0		ENST00000257663.3_1_7:77423607-77427674:-|nuORF	ENST00000257663.3_1_7:77423607-77427674:-|nuORF	ENST00000257663.3_1_7:77423607-77427674:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	497.1372375488281	2	496.737814	991.461075	-0.61148	-0.00030375	-0.041999	-2.0862E-05	-0.65348	-0.00032461	496.7377180408651	44.896	0.61189	45.665	45.289	45.901	0.7691					22	11	3	0	0	0	0.014271	1	16735	16735		112.59	70.499	1	5715900			47672	10249	34615	34895	46608	46608					-0.03499699724477523
SESVLRLSL	9	Unmodified	_SESVLRLSL_					0	0	0			REV__ENST00000443023.5_1_2:200322266-200322902:-|nuORF	REV__ENST00000443023.5_1_2:200322266-200322902:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	501.6205139160156	2	502.292756	1002.57096	-0.27793	-0.0001396	2.6054	0.0013087	2.3275	0.0011691	502.2940403546786	62.838	0.25551	62.838	62.711	62.966	0					7	4	2	0	0	0	0.47368	1	22678	22678		20.454	1.1966	1	502230	+		47673	24824	34616	34896	46609	46609					0.06977725614717656
SESYDGDIF	9	Unmodified	_SESYDGDIF_					0	0	0			REV__KL|p.P338S|1|0.43|ENSG00000133116|chr13:33053959-33053959|C/T|missense_variant	REV__KL|p.P338S|1|0.43|ENSG00000133116|chr13:33053959-33053959|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	516.6375732421875	2	516.711462	1031.40837	-0.69624	-0.00035975	1.691	0.00087376	0.99476	0.00051401	516.7123848505249	39.567	0.20209	39.567	39.441	39.643	0					5	3	2	0	0	0	0.68216	1	13566	13566		8.5933	0.68312	1	734620	+		47674	26855	34617	34897	46610	46610					-0.10607702577954115
SESYDGDIF	9	Unmodified	_SESYDGDIF_					0	0	0			REV__KL|p.P338S|1|0.43|ENSG00000133116|chr13:33053959-33053959|C/T|missense_variant	REV__KL|p.P338S|1|0.43|ENSG00000133116|chr13:33053959-33053959|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	516.711462	1031.40837	-0.69624	-0.00035975	1.691	0.00087376	0.99476	0.00051401	516.7123848505249	39.567	0.20209	39.567	39.441	39.643	0	0	0	NaN	8.5933	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	734620	+		47675	26855	34617	34897							-0.10607702577954115
SETAVVNVTY	10	Unmodified	_SETAVVNVTY_					0	0	0		nc|ENSG00000159217|Q9NZI8-2|IGF2BP1;ENSG00000159217|ENST00000290341|IGF2BP1;ENST00000454907.1_1_6:167115910-167116012:-|nuORF;ENST00000476938.5_1_7:23401151-23509630:-|nuORF;ENST00000499130.6_1_17:47091311-47113981:+|nuORF;ENST00000515586.5_1_17:47075143-47113981:+|nuORF;ENSG00000136231|ENST00000258729|IGF2BP3	nc|ENSG00000159217|Q9NZI8-2|IGF2BP1;ENSG00000136231|ENST00000258729|IGF2BP3	ENSG00000136231|ENST00000258729|IGF2BP3	MULTI-SECPEP	A375_MHC_IP_R1	1	542.39697265625	2	541.771854	1081.52915	-0.89425	-0.00048448	-1.7793	-0.00096396	-2.6735	-0.0014484	541.7708527337743	67.069	0.51229	67.069	66.836	67.348	0					15	9	2	0	0	0	0.071695	1	24268	24268		69.105	41.476	1	1312500			47676	4766;6360	34618	34898	46611	46611					-0.008348748644721127
SETAVVNVTY	10	Unmodified	_SETAVVNVTY_					0	0	0		nc|ENSG00000159217|Q9NZI8-2|IGF2BP1;ENSG00000159217|ENST00000290341|IGF2BP1;ENST00000454907.1_1_6:167115910-167116012:-|nuORF;ENST00000476938.5_1_7:23401151-23509630:-|nuORF;ENST00000499130.6_1_17:47091311-47113981:+|nuORF;ENST00000515586.5_1_17:47075143-47113981:+|nuORF;ENSG00000136231|ENST00000258729|IGF2BP3	nc|ENSG00000159217|Q9NZI8-2|IGF2BP1;ENSG00000136231|ENST00000258729|IGF2BP3	ENSG00000136231|ENST00000258729|IGF2BP3	MSMS	A375_MHC_IP_R2	2	541.74560546875	2	541.771854	1081.52915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.355	1	67.091	66.591	67.591	0.73631								0	0	0	0.027379	1	25143	25143		67.838	37.613	1				47677	4766;6360	34618	34898	46612	46612					-0.008348748644721127
SETCDTYSY	9	Unmodified	_SETCDTYSY_					0	0	0		ENSG00000091436|ENST00000375213|MAP3K20;nc|ENSG00000091436|Q9NYL2-3|MAP3K20;ENST00000476618.5_1_2:173940647-174074648:+|nuORF;nc|ENSG00000091436|Q9NYL2-2|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	MULTI-SECPEP	A375_MHC_IP_R2	2	534.15576171875	2	534.694955	1067.37536	-1.1737	-0.00062755	2.2082	0.0011807	1.0345	0.00055316	534.6957379872705	26.517	0.35588	27.177	27.058	27.414	0.65992					15	6	3	0	0	0	0.75466	1	8950	8950		1.8442	0	1	3624900			47678	1978	34619	34899	46613	46613					-0.15563652692299002
SETDLLNRF	9	Unmodified	_SETDLLNRF_					0	0	0		ENSG00000125170|ENST00000340099|DOK4	ENSG00000125170|ENST00000340099|DOK4	ENSG00000125170|ENST00000340099|DOK4	MULTI-MSMS	A375_MHC_IP_R1	1	548.678466796875	2	547.77747	1093.54039	-0.56291	-0.00030835	0.2012	0.00011021	-0.36172	-0.00019814	547.7776257020885	75.884	0.75533	75.884	75.514	76.269	0					43	14	4	0	0	0	0.02559	1	27589	27589		78.728	51.844	1	28373000			47679	3944	34620	34900	46614	46614					-0.0026405277033063612
SETDLLNRF	9	Unmodified	_SETDLLNRF_					0	0	0		ENSG00000125170|ENST00000340099|DOK4	ENSG00000125170|ENST00000340099|DOK4	ENSG00000125170|ENST00000340099|DOK4	MULTI-MSMS	A375_MHC_IP_R2	2	547.697021484375	2	547.77747	1093.54039	-0.83536	-0.00045759	0.023491	1.2868E-05	-0.81187	-0.00044472	547.7775727811877	75.105	0.81233	75.843	75.467	76.279	0.73751					40	14	4	0	0	0	0.0022058	1	28451	28451		142.08	89.811	1	28705000			47680	3944	34620	34900	46615	46615					-0.0026405277033063612
SETDMVRQI	9	Oxidation (M)	_SETDM(Oxidation (M))VRQI_		SETDM(1)VRQI		SETDM(130)VRQI	0	0	1		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	A375_MHC_IP_R1	1	548.1605224609375	2	547.760963	1093.50737	-0.7355	-0.00040288	0.17929	9.8208E-05	-0.55621	-0.00030467	547.7609183626415	27.84	0.75599	27.84	27.634	28.39	0					22	14	2	0	0	0	0.010055	1	8516	8516		125.53	65.14	1	4448300			47681	5831	34621	34901	46616	46616		313			-0.035640028846728455
SETDMVRQI	9	Oxidation (M)	_SETDM(Oxidation (M))VRQI_		SETDM(1)VRQI		SETDM(100)VRQI	0	0	1		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	A375_MHC_IP_R2	2	548.160400390625	2	547.760963	1093.50737	-0.7302	-0.00039997	-0.25312	-0.00013865	-0.98332	-0.00053862	547.7607962650178	27.287	0.71126	27.966	27.69	28.401	0.67857					20	13	2	0	0	0	0.0092511	2	9314	9314;9384		103.42	53.486	1	5720500			47682	5831	34621	34901	46617;46618	46617		313			-0.035640028846728455
SETDMVRQI	9	Unmodified	_SETDMVRQI_					0	0	0		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	A375_MHC_IP_R1	1	539.7056884765625	2	539.763506	1077.51246	-0.61087	-0.00032972	-0.42056	-0.000227	-1.0314	-0.00055673	539.763166993226	44.053	0.61196	44.053	43.706	44.318	0					21	11	2	0	0	0	0.0096896	1	15381	15381		110.67	59.045	1	4948700			47683	5831	34621	34902	46619	46619					-0.023196990220640146
SETDMVRQI	9	Unmodified	_SETDMVRQI_					0	0	0		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	A375_MHC_IP_R2	2	540.1624145507812	2	539.763506	1077.51246	-0.72266	-0.00039006	0.44593	0.00024069	-0.27673	-0.00014937	539.7627282155236	43.221	1.0123	43.994	43.421	44.433	0.7724					49	19	5	0	0	0	0.0028938	2	16101	16071;16101		157.8	97.721	1	7969300			47684	5831	34621	34902	46620;46621	46621					-0.023196990220640146
SETDPGAEEL	10	Unmodified	_SETDPGAEEL_					0	0	0		nc|ENSG00000060709|O15034|RIMBP2;ENSG00000060709|ENST00000690449|RIMBP2	nc|ENSG00000060709|O15034|RIMBP2	nc|ENSG00000060709|O15034|RIMBP2	MSMS	A375_MHC_IP_R2	2	524.2030639648438	2	524.227476	1046.4404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.586	1	77.327	76.827	77.827	0.74052								0	0	0	0.15308	1	29079	29079		10.824	0.75	1				47685	1313	34622	34903	46622	46622					-0.08096334894798929
SETEGTPKL	9	Unmodified	_SETEGTPKL_					0	0	0		nc|ENSG00000169592|Q8NBZ0-2|INO80E;ENSG00000169592|ENST00000563197|INO80E	nc|ENSG00000169592|Q8NBZ0-2|INO80E	nc|ENSG00000169592|Q8NBZ0-2|INO80E	MULTI-MSMS	A375_MHC_IP_R1	1	481.6451721191406	2	481.245472	960.476391	-0.45527	-0.0002191	-0.14955	-7.1968E-05	-0.60482	-0.00029106	481.245314700803	27.414	0.40376	27.414	27.28	27.684	0					12	7	2	0	0	0	0.11629	1	8343	8343		47.749	11.622	1	2196800			47686	7418	34623	34904	46623	46623					-0.0054283292729451205
SETELKDTY	9	Unmodified	_SETELKDTY_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-SECPEP	A375_MHC_IP_R2	2	542.668701171875	2	543.253494	1084.49243	-1.3056	-0.00070927	-0.46443	-0.0002523	-1.77	-0.00096157	543.2532042584876	28.547	0.25326	29.24	29.025	29.278	0.69335					7	4	2	0	0	0	0.63622	1	9849	9849		24.991	3.454	1	3329400			47687	7937	34624	34905	46624	46624					-0.0464317148102964
SETEVLFVFL	10	Unmodified	_SETEVLFVFL_					0	0	0			REV__chr7:2278305-2290241|108|12.73|0.08|7.29|-|2|TE_info:AluSz6,AluSz6_dup17644,Alu,SINE,donor,+,2290241,2290532|SNX8,None|1	REV__chr7:2278305-2290241|108|12.73|0.08|7.29|-|2|TE_info:AluSz6,AluSz6_dup17644,Alu,SINE,donor,+,2290241,2290532|SNX8,None|1	MSMS	A375_MHC_IP_R1	1	394.9715576171875	3	395.213024	1182.61724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.015	1	30.015	29.515	30.515	0								0	0	0	0.15067	1	9481	9481		16.566	3.6933	1		+		47688	15774	34625	34906	46625	46625					0.03323745726152083
SETFGYRRL	9	Unmodified	_SETFGYRRL_					0	0	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	A375_MHC_IP_R1	1	565.1220092773438	2	564.793455	1127.57236	-0.44364	-0.00025056	-0.14531	-8.2068E-05	-0.58895	-0.00033263	564.7932020778844	46.456	0.40147	46.456	46.144	46.545	0					17	7	3	0	0	0	0.65246	1	16293	16293		15.847	0	1	2977400			47689	5800	34626	34907	46626	46626					0.013673597034767226
SETGALKTF	9	Unmodified	_SETGALKTF_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000472560.5_1_3:183894781-183898834:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MULTI-MSMS	A375_MHC_IP_R1	1	477.6502990722656	2	477.250557	952.486562	-0.50497	-0.000241	-0.14857	-7.0904E-05	-0.65354	-0.0003119	477.2506613553616	40.265	0.66254	40.265	39.896	40.559	0					20	12	2	0	0	0	0.012447	1	13809	13809		93.166	43.233	1	12734000			47690	6467	34627	34908	46627	46627					0.008417747979592605
SETGALKTF	9	Unmodified	_SETGALKTF_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000472560.5_1_3:183894781-183898834:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MULTI-MSMS	A375_MHC_IP_R2	2	477.64996337890625	2	477.250557	952.486562	-0.599	-0.00028588	-0.11537	-5.506E-05	-0.71437	-0.00034094	477.25061958221767	39.419	0.7118	40.194	39.914	40.626	0.77451					22	13	2	0	0	0	0.0092511	1	14544	14544		103.42	44.741	1	23232000			47691	6467	34627	34908	46628	46628					0.008417747979592605
SETGFLTY	8	Unmodified	_SETGFLTY_					0	0	0		ENST00000489905.1_1_6:33248421-33255161:-|nuORF;WDR46|p.H402Lfs*101|1|0.3|ENSG00000227057|chr6:33280898-33280898|T/-|frameshift_variant;ENSG00000227057|ENST00000374617|WDR46	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	916.8084106445312	1	917.42509	916.417813	-0.30388	-0.00027879	-0.16692	-0.00015314	-0.4708	-0.00043192	917.4249096100276	86.401	0.45685	86.401	86.172	86.629	0					15	8	2	0	0	0	0.73563	1	31766	31766		44.407	19.733	1	3808700			47692	9707	34628	34909	46629	46629					-0.04373889501755457
SETGFLTY	8	Unmodified	_SETGFLTY_					0	0	0		ENST00000489905.1_1_6:33248421-33255161:-|nuORF;WDR46|p.H402Lfs*101|1|0.3|ENSG00000227057|chr6:33280898-33280898|T/-|frameshift_variant;ENSG00000227057|ENST00000374617|WDR46	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	917.42509	916.417813	-0.16754	-0.00015371	-0.35959	-0.0003299	-0.52714	-0.00048361	917.4244577066229	85.59	0.50835	86.326	86.137	86.645	0.73602	-0.037546	-0.00011387	NaN	44.407	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3013700			47693	9707	34628	34909							-0.04373889501755457
SETGSTFKKF	10	Unmodified	_SETGSTFKKF_					0	0	0		AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;ENSG00000131016|ENST00000402676|AKAP12	AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant	AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	378.26068115234375	3	377.860873	1130.56079	0.18825	7.1133E-05	-0.19178	-7.2467E-05	-0.0035293	-1.3336E-06	377.8607511789094	25.638	0.71049	25.638	25.408	26.118	0					20	13	2	0	0	0	0.79938	1	7536	7536		23.964	13.814	1	7277800			47694	97	34629	34910	46630	46630					0.0007311788949664333
SETGSTFKKF	10	Unmodified	_SETGSTFKKF_					0	0	0		AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;ENSG00000131016|ENST00000402676|AKAP12	AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant	AKAP12|p.E1310Rfs*3|1|0.21|ENSG00000131016|chr6:151352318-151352319|AG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	378.5953674316406	3	377.860873	1130.56079	-0.27136	-0.00010254	0.23194	8.7641E-05	-0.039418	-1.4895E-05	378.1952221603322	24.95	0.66309	25.594	25.465	26.128	0.64368					20	12	2	0	0	0	0.90611	1	8318	8318		19.987	15.458	1	4552000			47695	97	34629	34910	46631	46631					0.0007311788949664333
SETHLTVFF	9	Unmodified	_SETHLTVFF_					0	0	0		ENSG00000148481|ENST00000277632|MINDY3	ENSG00000148481|ENST00000277632|MINDY3	ENSG00000148481|ENST00000277632|MINDY3	MULTI-MSMS	A375_MHC_IP_R1	1	541.1708374023438	2	540.771657	1079.52876	-0.55344	-0.00029929	0.075449	4.08E-05	-0.47799	-0.00025849	540.7716999042798	97.661	0.65981	97.661	97.288	97.948	0					24	12	3	0	0	0	0.17328	1	35871	35871		39.957	7.6518	1	3467100			47696	5744	34630	34911	46632	46632					-0.007822497936786021
SETHLTVFF	9	Unmodified	_SETHLTVFF_					0	0	0		ENSG00000148481|ENST00000277632|MINDY3	ENSG00000148481|ENST00000277632|MINDY3	ENSG00000148481|ENST00000277632|MINDY3	MULTI-MSMS	A375_MHC_IP_R2	2	541.1713256835938	2	540.771657	1079.52876	-0.96434	-0.00052149	0.40663	0.00021989	-0.55771	-0.00030159	540.7718651574311	96.725	0.70709	97.481	97.115	97.822	0.75586					26	13	3	0	0	0	0.067501	1	36696	36696		57.471	9.1255	1	2614000			47697	5744	34630	34911	46633	46633					-0.007822497936786021
SETHNAQPV	9	Unmodified	_SETHNAQPV_					0	0	0			REV__nc|ENSG00000166689|Q6IQ23|PLEKHA7	REV__nc|ENSG00000166689|Q6IQ23|PLEKHA7	MSMS	A375_MHC_IP_R2	2	491.64459228515625	2	491.733063	981.451573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.739	1	46.504	46.004	47.004	0.76519								0	0	0	0.15486	1	17108	17108		7.9102	0	1		+		47698	20693	34631	34912	46634	46634					-0.0398946800999056
SETILAVGL	9	Unmodified	_SETILAVGL_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-SECPEP	A375_MHC_IP_R2	2	452.1632995605469	2	451.7633	901.512048	-0.27115	-0.00012249	-0.93574	-0.00042273	-1.2069	-0.00054523	451.7631247014007	108.02	0.61497	108.77	108.56	109.17	0.75436					22	11	3	0	0	0	0.10969	1	40814	40814		48.346	0	1	1356400			47699	3161	34632	34913	46635	46635					0.057352493203779886
SETKSTLLF	9	Unmodified	_SETKSTLLF_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	A375_MHC_IP_R1	1	513.6788330078125	2	513.279315	1024.54408	-0.56307	-0.00028901	-0.076809	-3.9424E-05	-0.63987	-0.00032843	513.2792378433072	64.917	0.50664	64.917	64.649	65.156	0					15	9	2	0	0	0	0.14922	1	23476	23476		41.84	9.0539	1	1795400			47700	7534	34633	34914	46636	46636					0.032786170035251416
SETKSVLSVKY	11	Unmodified	_SETKSVLSVKY_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	A375_MHC_IP_R1	1	413.5962829589844	3	414.230966	1239.67107	0.061464	2.546E-05	-0.013726	-5.6857E-06	0.047738	1.9775E-05	414.23092096849797	23.457	0.25464	23.457	23.33	23.584	0					7	4	2	0	0	0	0.99971	1	6483	6483		2.084	2.084	1	2597800			47701	7983	34634	34915	46637	46637					0.060819181578835924
SETLARLKPP	10	Unmodified	_SETLARLKPP_					0	0	0			REV__L1PB1_dup12829|chr21:46585548-46587567:+|1.182533549073013|0.3950341382787979|1.58|465.0|30|2|sense	REV__L1PB1_dup12829|chr21:46585548-46587567:+|1.182533549073013|0.3950341382787979|1.58|465.0|30|2|sense	MSMS	A375_MHC_IP_R1	1	556.3576049804688	2	556.327131	1110.63971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.243	1	62.243	61.743	62.743	0								0	0	0	0.1524	1	22474	22474		13.042	0.80181	1		+		47702	26903	34635	34916	46638	46638					0.08881389914427018
SETLQAMVES	10	Unmodified	_SETLQAMVES_					0	0	0			REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	MULTI-MSMS	A375_MHC_IP_R2	2	1095.40087890625	1	1094.50342	1093.49614	0.26064	0.00028527	-0.29811	-0.00032628	-0.037472	-4.1013E-05	1094.5030032327943	93.845	1.2152	94.59	94.16	95.375	0.74474					65	23	4	0	0	0	0.33603	1	35666	35666		37.974	0	1	55884000	+		47703	18209	34636	34917	46639	46639					-0.04686824978830373
SETLRRGNPD	10	Unmodified	_SETLRRGNPD_					0	0	0			REV__nc|ENSG00000182871|P39060|COL18A1	REV__nc|ENSG00000182871|P39060|COL18A1	MULTI-SECPEP	A375_MHC_IP_R2	2	572.1114501953125	2	572.788901	1143.56325	-0.2373	-0.00013592	2.9798	0.0017068	2.7425	0.0015709	572.7910906708368	45.846	0.50229	46.611	46.353	46.855	0.76518					10	7	2	0	0	0	0.85226	1	17227	17227		14.838	0	1	1959700	+		47704	27398	34637	34918	46640	46640					-0.002790336528505577
SETMRLLDD	9	Unmodified	_SETMRLLDD_					0	0	0			REV__nc|ENSG00000095261|Q16401-2|PSMD5	REV__nc|ENSG00000095261|Q16401-2|PSMD5	MULTI-MSMS	A375_MHC_IP_R2	2	540.6895141601562	2	540.255514	1078.49647	-1.283	-0.00069312	-3.5574	-0.0019219	-4.8404	-0.002615	540.7538894521678	53.807	0.66684	54.558	54.249	54.916	0.75105					20	12	2	0	0	0	0.4867	1	20223	20223		20.454	0	1	1592600	+		47705	16990	34638	34919	46641	46641					-0.03963405258969033
SETPEIRKY	9	Unmodified	_SETPEIRKY_					0	0	0		ENST00000574871.1_1_17:4798302-4798913:+|nuORF;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1	ENST00000574871.1_1_17:4798302-4798913:+|nuORF	ENST00000574871.1_1_17:4798302-4798913:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	375.26446533203125	3	374.864506	1121.57169	0.029494	1.1056E-05	0.15849	5.9411E-05	0.18798	7.0468E-05	374.8645222440449	23.508	0.40872	23.508	23.278	23.687	0					24	7	4	0	0	0	0.022401	1	6466	6466		81.915	60.116	1	143430000			47706	5247	34639	34920	46642	46642					0.015765202637794573
SETPEIRKY	9	Unmodified	_SETPEIRKY_					0	0	0		ENST00000574871.1_1_17:4798302-4798913:+|nuORF;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1	ENST00000574871.1_1_17:4798302-4798913:+|nuORF	ENST00000574871.1_1_17:4798302-4798913:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	562.192626953125	2	561.793121	1121.57169	-0.7583	-0.00042601	0.070717	3.9728E-05	-0.68758	-0.00038628	561.7929966500304	23.514	0.71305	23.514	23.278	23.991	0					27	13	4	0	0	0	0.010955	1	6473	6473		121.53	69.266	1	34552000			47707	5247	34639	34920	46643	46643					0.015765202637794573
SETPEIRKY	9	Unmodified	_SETPEIRKY_					0	0	0		ENST00000574871.1_1_17:4798302-4798913:+|nuORF;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1	ENST00000574871.1_1_17:4798302-4798913:+|nuORF	ENST00000574871.1_1_17:4798302-4798913:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	562.1926879882812	2	561.793121	1121.57169	-0.92074	-0.00051727	-0.2192	-0.00012315	-1.1399	-0.00064041	561.793008962989	21.329	0.45741	21.948	21.726	22.184	0.61932					21	8	3	0	0	0	0.0111	1	6684	6684		114.2	61.933	1	17286000			47708	5247	34639	34920	46644	46644					0.015765202637794573
SETPEIRKY	9	Unmodified	_SETPEIRKY_					0	0	0		ENST00000574871.1_1_17:4798302-4798913:+|nuORF;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1	ENST00000574871.1_1_17:4798302-4798913:+|nuORF	ENST00000574871.1_1_17:4798302-4798913:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	562.1925659179688	2	561.793121	1121.57169	-0.89034	-0.00050019	0.13772	7.7369E-05	-0.75263	-0.00042282	561.7931419973107	23.439	0.30341	24.069	23.928	24.232	0.63015					7	5	2	0	0	0	0.14368	1	7567	7567		53.404	30.668	1	4617000			47709	5247	34639	34920	46645	46645					0.015765202637794573
SETPEIRKY	9	Unmodified	_SETPEIRKY_					0	0	0		ENST00000574871.1_1_17:4798302-4798913:+|nuORF;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1	ENST00000574871.1_1_17:4798302-4798913:+|nuORF	ENST00000574871.1_1_17:4798302-4798913:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	375.2645263671875	3	374.864506	1121.57169	0.022221	8.33E-06	-0.3506	-0.00013143	-0.32838	-0.0001231	374.8643703787203	23.426	0.40439	24.056	23.878	24.283	0.63014					13	7	2	0	0	0	0.13064	1	7540	7540		67.838	52.881	1	19623000			47710	5247	34639	34920	46646	46646					0.015765202637794573
SETPEIRKY	9	Unmodified	_SETPEIRKY_					0	0	0		ENST00000574871.1_1_17:4798302-4798913:+|nuORF;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1	ENST00000574871.1_1_17:4798302-4798913:+|nuORF	ENST00000574871.1_1_17:4798302-4798913:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	375.2645263671875	3	374.864506	1121.57169	-0.020209	-7.5758E-06	-0.25564	-9.5832E-05	-0.27585	-0.00010341	374.86436702899215	21.335	0.91426	21.954	21.575	22.49	0.61932					47	17	4	0	0	0	0.35487	1	6658	6658		33.445	25.001	1	67113000			47711	5247	34639	34920	46647	46647					0.015765202637794573
SETPEIRKY	9	Unmodified	_SETPEIRKY_					0	0	0		ENST00000574871.1_1_17:4798302-4798913:+|nuORF;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1	ENST00000574871.1_1_17:4798302-4798913:+|nuORF	ENST00000574871.1_1_17:4798302-4798913:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	374.968017578125	3	374.864506	1121.57169	-0.02947	-1.1047E-05	-0.10689	-4.007E-05	-0.13636	-5.1117E-05	374.86437022317773	22.577	1.0204	23.207	22.5	23.521	0.63014					45	19	3	0	0	0	0.083712	1	7167	7167		51.415	32.694	1	4487000			47712	5247	34639	34920	46648	46648					0.015765202637794573
SETPIIGNKY	10	Unmodified	_SETPIIGNKY_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	A375_MHC_IP_R1	1	561.6951293945312	2	561.295496	1120.57644	0.0429	2.408E-05	-0.19769	-0.00011096	-0.15479	-8.6881E-05	561.2952244668409	44.74	0.60979	44.74	44.42	45.03	0					27	11	3	0	0	0	0.01165	1	15582	15582		114.65	45.544	1	7871900			47713	1612	34640	34921	46649	46649					0.02097404406526948
SETPIIGNKY	10	Unmodified	_SETPIIGNKY_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	A375_MHC_IP_R2	2	561.695556640625	2	561.295496	1120.57644	-0.40511	-0.00022739	-0.1732	-9.7217E-05	-0.57831	-0.0003246	561.2952936777475	43.938	0.60502	44.707	44.38	44.985	0.7691					29	11	4	0	0	0	0.015521	1	16372	16372		126.57	72.733	1	9099600			47714	1612	34640	34921	46650	46650					0.02097404406526948
SETPIVQNL	9	Unmodified	_SETPIVQNL_					0	0	0		ENST00000573177.1_1_18:3603669-3604008:+|nuORF	ENST00000573177.1_1_18:3603669-3604008:+|nuORF	ENST00000573177.1_1_18:3603669-3604008:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.18743896484375	2	500.769114	999.523675	-0.38492	-0.00019276	0.091858	4.6E-05	-0.29306	-0.00014676	500.76911491419753	73.462	0.75953	73.462	73.184	73.943	0					23	14	2	0	0	0	0.10411	3	26730	26730;26749;26772		49.933	9.9757	1	3059500			47715	13626	34641	34922	46651;46652;46653	46651					0.023894463437159175
SETPIVQNL	9	Unmodified	_SETPIVQNL_					0	0	0		ENST00000573177.1_1_18:3603669-3604008:+|nuORF	ENST00000573177.1_1_18:3603669-3604008:+|nuORF	ENST00000573177.1_1_18:3603669-3604008:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	501.1687316894531	2	500.769114	999.523675	-0.65884	-0.00032992	-0.23849	-0.00011943	-0.89732	-0.00044935	500.7689776644237	72.769	0.71204	73.505	73.124	73.836	0.73541					26	13	3	0	0	0	0.026268	1	27589	27589		78.149	24.574	1	3304500			47716	13626	34641	34922	46654	46654					0.023894463437159175
SETPNRKSI	9	Unmodified	_SETPNRKSI_					0	0	0		ENST00000452544.2_2_6:157472012-157472270:+|nuORF	ENST00000452544.2_2_6:157472012-157472270:+|nuORF	ENST00000452544.2_2_6:157472012-157472270:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1922607421875	2	516.277638	1030.54072	-0.58626	-0.00030267	4.1405	0.0021376	3.5542	0.001835	516.2809207593475	64.669	0.30599	64.669	64.444	64.75	0					6	5	2	0	0	0	0.53748	1	23352	23352		24.021	11.78	1	377770			47717	12082	34642	34923	46655	46655					0.02667366949526695
SETQITSHGF	10	Unmodified	_SETQITSHGF_					0	0	0		ENSG00000164144|ENST00000353617|ARFIP1;nc|ENSG00000164144|P53367-2|ARFIP1	ENSG00000164144|ENST00000353617|ARFIP1	ENSG00000164144|ENST00000353617|ARFIP1	MULTI-MSMS	A375_MHC_IP_R1	1	554.1590576171875	2	553.759278	1105.504	-0.41933	-0.00023221	0.11511	6.3745E-05	-0.30422	-0.00016846	553.7592077043355	37.279	0.6105	37.279	36.945	37.556	0					27	11	4	0	0	0	0.15514	2	12557	12505;12557		53.833	9.9745	1	8476000			47718	6790	34643	34924	46656;46657	46657					-0.04452929667036187
SETQITSHGF	10	Unmodified	_SETQITSHGF_					0	0	0		ENSG00000164144|ENST00000353617|ARFIP1;nc|ENSG00000164144|P53367-2|ARFIP1	ENSG00000164144|ENST00000353617|ARFIP1	ENSG00000164144|ENST00000353617|ARFIP1	MULTI-MSMS	A375_MHC_IP_R2	2	554.1586303710938	2	553.759278	1105.504	-1.0953	-0.00060656	0.46299	0.00025638	-0.63236	-0.00035017	553.7594324244175	36.466	0.61068	37.237	36.953	37.564	0.7709					23	11	3	0	0	0	0.2347	1	13318	13318		45.7	22.963	1	6531700			47719	6790	34643	34924	46658	46658					-0.04452929667036187
SETQQSLQW	9	Unmodified	_SETQQSLQW_					0	0	0		ENST00000486597.1_1_1:145441207-145441333:+|nuORF	ENST00000486597.1_1_1:145441207-145441333:+|nuORF	ENST00000486597.1_1_1:145441207-145441333:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	553.70263671875	2	553.759278	1105.504	-1.0953	-0.00060656	0.46299	0.00025638	-0.63236	-0.00035017	553.7594324244175	36.466	0.61068	37.237	36.953	37.564	0.7709					23	11	3	0	0	0	0.55471	1	13259	13259		17.113	2.7075	1	6531700			47720	12585	34644	34925	46659	46659					-0.04452929667036187
SETRARIY	8	Unmodified	_SETRARIY_					0	0	0			REV__ENSG00000183723|ENST00000394106|CMTM4	REV__ENSG00000183723|ENST00000394106|CMTM4	MULTI-MSMS	A375_MHC_IP_R2	2	498.66314697265625	2	498.267073	994.519593	-0.49318	-0.00024573	-3.1791	-0.001584	-3.6723	-0.0018298	498.2635761807045	80.017	0.50729	80.762	80.453	80.961	0.74473					24	9	4	0	0	0	0.70206	1	30418	30418		34.102	0	1	3240000	+		47721	21772	34645	34926	46660	46660					0.022114016406476367
SETRDTLRQW	10	Unmodified	_SETRDTLRQW_					0	0	0		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	MULTI-SECPEP	A375_MHC_IP_R2	2	431.2880859375	3	431.217831	1290.63166	-0.25469	-0.00010983	0.049978	2.1551E-05	-0.20471	-8.8274E-05	431.21774995728634	30.807	0.45314	31.525	31.317	31.77	0.71857					13	8	2	0	0	0	0.92445	1	10910	10910		14.218	7.5947	1	4528100			47722	4434	34646	34927	46661	46661					-0.0020278907300053106
SETRRLWRKQL	11	Unmodified	_SETRRLWRKQL_					0	0	0		ENST00000522362.6_1_8:26366474-26366684:-|nuORF	ENST00000522362.6_1_8:26366474-26366684:-|nuORF	ENST00000522362.6_1_8:26366474-26366684:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	492.0181884765625	3	491.61967	1471.83718	-0.42679	-0.00020982	-0.83916	-0.00041255	-1.2659	-0.00062236	491.61935673848154	134.36	1.0705	134.5	133.88	134.95	0.13901					32	20	2	0	0	0	0.73809	1	52898	52898		0.40827	0	1	2144700			47723	13024	34647	34928	46662	46662					0.12013409177075118
SETSSVNKGWS	11	Unmodified	_SETSSVNKGWS_					0	0	0			REV__ENSG00000185010|ENST00000360256|F8	REV__ENSG00000185010|ENST00000360256|F8	MULTI-MSMS	A375_MHC_IP_R1	1	591.2213745117188	2	591.275292	1180.53603	-0.33957	-0.00020078	-0.13789	-8.1534E-05	-0.47746	-0.00028231	591.2758473794993	83.231	0.86237	83.231	83.024	83.887	0					21	16	2	0	0	0	0.72494	1	30435	30435		13.615	0.5724	1	1642200	+		47724	21858	34648	34929	46663	46663					-0.047015619838930434
SETTLVLSKR	10	Unmodified	_SETTLVLSKR_					0	0	0		ENSG00000154175|ENST00000471714|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	MULTI-SECPEP	A375_MHC_IP_R1	1	567.679931640625	2	567.32987	1132.64519	-0.6006	-0.00034074	-0.15943	-9.0448E-05	-0.76003	-0.00043119	567.3297682433933	131.35	3.2992	131.35	130.82	134.12	0					104	64	2	0	0	0	0.92957	1	50523	50523		6.2058	6.2058	1	6912400			47725	6068	34649	34930	46664	46664					0.08417068706239661
SETTSVTVTL	10	Unmodified	_SETTSVTVTL_					0	0	0		CDH7|p.G244E|1|0.38|ENSG00000081138|chr18:65822186-65822186|G/A|missense_variant	CDH7|p.G244E|1|0.38|ENSG00000081138|chr18:65822186-65822186|G/A|missense_variant	CDH7|p.G244E|1|0.38|ENSG00000081138|chr18:65822186-65822186|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	519.98583984375	2	519.271687	1036.52882	-0.51513	-0.00026749	0.64197	0.00033336	0.12685	6.5868E-05	519.2719254311845	77.49	0.81228	77.49	77.083	77.895	0					36	15	3	0	0	0	0.27864	1	28283	28283		34.402	0.29928	1	7263600			47726	349	34650	34931	46665	46665					0.012017054156785889
SETTSVTVTL	10	Unmodified	_SETTSVTVTL_					0	0	0		CDH7|p.G244E|1|0.38|ENSG00000081138|chr18:65822186-65822186|G/A|missense_variant	CDH7|p.G244E|1|0.38|ENSG00000081138|chr18:65822186-65822186|G/A|missense_variant	CDH7|p.G244E|1|0.38|ENSG00000081138|chr18:65822186-65822186|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	519.985595703125	2	519.271687	1036.52882	-0.67306	-0.0003495	0.040007	2.0775E-05	-0.63305	-0.00032873	519.2714730305523	76.606	1.0648	77.346	76.64	77.705	0.74052					49	20	4	0	0	0	0.19481	1	29119	29119		49.933	0	1	8654300			47727	349	34650	34931	46666	46666					0.012017054156785889
SETWSFSV	8	Unmodified	_SETWSFSV_					0	0	0		ENSG00000197479|ENST00000354757|PCDHB11;PCDHB11|p.E37K|1|0.41|ENSG00000197479|chr5:141199883-141199883|G/A|missense_variant	ENSG00000197479|ENST00000354757|PCDHB11	ENSG00000197479|ENST00000354757|PCDHB11	MULTI-MSMS	A375_MHC_IP_R1	1	472.1133728027344	2	471.713808	941.413062	-0.42004	-0.00019814	0.17225	8.1254E-05	-0.24779	-0.00011688	471.71375556304065	50.587	0.5078	50.587	50.357	50.864	0					16	9	2	0	0	0	0.75805	1	17930	17930		18.135	0	1	2645300			47728	9164	34651	34932	46667	46667					-0.05998773644512312
SETWSFSV	8	Unmodified	_SETWSFSV_					0	0	0		ENSG00000197479|ENST00000354757|PCDHB11;PCDHB11|p.E37K|1|0.41|ENSG00000197479|chr5:141199883-141199883|G/A|missense_variant	ENSG00000197479|ENST00000354757|PCDHB11	ENSG00000197479|ENST00000354757|PCDHB11	MULTI-MSMS	A375_MHC_IP_R2	2	472.11328125	2	471.713808	941.413062	-0.83487	-0.00039382	0.35411	0.00016704	-0.48075	-0.00022678	471.7138960831345	49.887	0.50971	50.642	50.344	50.854	0.75406					16	9	2	0	0	0	0.71451	1	18751	18751		30.225	8.4782	1	2628500			47729	9164	34651	34932	46668	46668					-0.05998773644512312
SETWSFSV	8	Unmodified	_SETWSFSV_					0	0	0		ENSG00000197479|ENST00000354757|PCDHB11;PCDHB11|p.E37K|1|0.41|ENSG00000197479|chr5:141199883-141199883|G/A|missense_variant	ENSG00000197479|ENST00000354757|PCDHB11	ENSG00000197479|ENST00000354757|PCDHB11	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	471.713808	941.413062	-0.42004	-0.00019814	0.17225	8.1254E-05	-0.24779	-0.00011688	471.71375556304065	50.587	0.5078	50.587	50.357	50.864	0	-0.027492	-9.1942E-05	NaN	30.225	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2645300			47730	9164	34651	34932							-0.05998773644512312
SETYCKTLE	9	Unmodified	_SETYCKTLE_					0	0	0			REV__nc|ENSG00000104442|Q9NVT9-2|ARMC1	REV__nc|ENSG00000104442|Q9NVT9-2|ARMC1	MULTI-SECPEP	A375_MHC_IP_R2	2	537.6578369140625	2	537.244615	1072.47468	-1.3026	-0.00069983	-1.3396	-0.00071969	-2.6422	-0.0014195	537.2437132129116	56.683	0.15311	57.434	57.356	57.51	0.75015					4	2	2	0	0	0	0.63327	1	21443	21443		18.146	2.2992	1	412350	+		47731	27156	34652	34933	46669	46669					-0.05866210007548034
SETYWMTY	8	Unmodified	_SETYWMTY_					0	0	0		ENSG00000182489|ENST00000372956|XKRX	ENSG00000182489|ENST00000372956|XKRX	ENSG00000182489|ENST00000372956|XKRX	MULTI-MSMS	A375_MHC_IP_R2	2	541.120361328125	2	540.720775	1079.427	-1.0629	-0.00057471	0.59795	0.00032333	-0.46491	-0.00025138	540.7209396759126	50.031	0.76383	50.785	50.445	51.209	0.75406					29	14	3	0	0	0	0.75322	1	18815	18815		19.439	0	1	4262900			47732	8411	34653	34934	46670	46670					-0.10953864207726838
SEVDFEERF	9	Unmodified	_SEVDFEERF_					0	0	0		ENSG00000079432|ENST00000681038|CIC;nc|ENSG00000079432|Q96RK0-2|CIC	ENSG00000079432|ENST00000681038|CIC	ENSG00000079432|ENST00000681038|CIC	MULTI-MSMS	A375_MHC_IP_R1	1	579.6597900390625	2	579.259111	1156.50367	-0.35973	-0.00020838	0.36745	0.00021285	0.0077153	4.4692E-06	579.2593802035858	66.047	0.76102	66.047	65.565	66.326	0					34	14	3	0	0	0	0.062639	1	23882	23882		59.368	37.831	1	12819000			47733	1696	34654	34935	46671	46671					-0.06832349386900205
SEVDFEERF	9	Unmodified	_SEVDFEERF_					0	0	0		ENSG00000079432|ENST00000681038|CIC;nc|ENSG00000079432|Q96RK0-2|CIC	ENSG00000079432|ENST00000681038|CIC	ENSG00000079432|ENST00000681038|CIC	MULTI-MSMS	A375_MHC_IP_R2	2	579.2632446289062	2	579.259111	1156.50367	-0.38126	-0.00022085	0.017571	1.0178E-05	-0.36369	-0.00021067	579.2592256994155	65.416	1.0668	66.154	65.715	66.782	0.73811					61	20	5	0	0	0	0.037085	1	24743	24743		69.338	39.498	1	9537600			47734	1696	34654	34935	46672	46672					-0.06832349386900205
SEVDLTRSF	9	Unmodified	_SEVDLTRSF_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-MSMS	A375_MHC_IP_R1	1	527.6641235351562	2	527.264196	1052.51384	-0.53108	-0.00028002	-0.033034	-1.7417E-05	-0.56411	-0.00029744	527.26421290908	60.842	1.4772	60.842	60.414	61.891	0					98	28	6	0	0	0	0.00039373	1	21838	21838		203.64	103.88	1	298950000			47735	2235	34655	34936	46673	46673					-0.01031741661677188
SEVDLTRSF	9	Unmodified	_SEVDLTRSF_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-MSMS	A375_MHC_IP_R2	2	528.6346435546875	2	527.264196	1052.51384	-0.8134	-0.00042888	-0.037902	-1.9984E-05	-0.85131	-0.00044886	527.2642074610445	60.082	1.572	60.829	60.349	61.921	0.74714					105	30	6	0	0	0	0.31062	1	22847	22847		29.841	3.5724	1	391240000			47736	2235	34655	34936	46674	46674					-0.01031741661677188
SEVDLTRSFSF	11	Unmodified	_SEVDLTRSFSF_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-MSMS	A375_MHC_IP_R2	2	644.011962890625	2	644.314417	1286.61428	-0.85177	-0.00054881	0.88586	0.00057077	0.034089	2.1964E-05	644.3140525135294	97.439	0.35661	98.195	97.974	98.331	0.75586					15	6	4	0	0	0	0.20854	1	36938	36938		53.798	33.217	1	1401400			47737	2235	34656	34937	46675	46675					-0.017561293986773308
SEVDSPLHAV	10	Unmodified	_SEVDSPLHAV_					0	0	0		nc|ENSG00000187790|Q8IYD8-3|FANCM;ENSG00000187790|ENST00000267430|FANCM	nc|ENSG00000187790|Q8IYD8-3|FANCM	nc|ENSG00000187790|Q8IYD8-3|FANCM	MSMS	A375_MHC_IP_R2	2	527.1752319335938	2	527.264196	1052.51384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.496	1	43.269	42.769	43.769	0.7724								0	0	0	0.13854	1	15809	15809		30.637	1.555	1				47738	8857	34657	34938	46676	46676					-0.01031741661677188
SEVEEEGEEEE	11	Unmodified	_SEVEEEGEEEE_					0	0	0		nc|ENSG00000174038|Q5VYM1-3|SPATA31G1;nc|ENSG00000174038|Q5VYM1-2|SPATA31G1;ENSG00000174038|ENST00000312292|C9orf131	nc|ENSG00000174038|Q5VYM1-3|SPATA31G1	nc|ENSG00000174038|Q5VYM1-3|SPATA31G1	MSMS	A375_MHC_IP_R1	1	647.7269897460938	2	647.743884	1293.47322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.21	1	47.21	46.71	47.71	0								0	0	0	0.16258	1	16598	16598		5.2969	0.39987	1				47739	7852	34658	34939	46677	46677					-0.16178217353217406
SEVELEQRRY	10	Unmodified	_SEVELEQRRY_					0	0	0		REXO1|p.V222Hfs*6|1|0.03|ENSG00000079313|chr19:1828103-1828125|GGTGGCCTGGAGTTGTCCACCAC/-|frameshift_variant;ENSG00000079313|ENST00000170168|REXO1	REXO1|p.V222Hfs*6|1|0.03|ENSG00000079313|chr19:1828103-1828125|GGTGGCCTGGAGTTGTCCACCAC/-|frameshift_variant	REXO1|p.V222Hfs*6|1|0.03|ENSG00000079313|chr19:1828103-1828125|GGTGGCCTGGAGTTGTCCACCAC/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	655.2300415039062	2	654.830766	1307.64698	-0.75528	-0.00049458	-0.16554	-0.0001084	-0.92081	-0.00060298	654.8305661890975	26.51	0.30416	26.51	26.322	26.626	0					11	5	3	0	0	0	0.15934	1	7922	7922		53.404	28.413	1	3622200			47740	1692	34659	34940	46678	46678					0.005460777241978576
SEVELEQRRY	10	Unmodified	_SEVELEQRRY_					0	0	0		REXO1|p.V222Hfs*6|1|0.03|ENSG00000079313|chr19:1828103-1828125|GGTGGCCTGGAGTTGTCCACCAC/-|frameshift_variant;ENSG00000079313|ENST00000170168|REXO1	REXO1|p.V222Hfs*6|1|0.03|ENSG00000079313|chr19:1828103-1828125|GGTGGCCTGGAGTTGTCCACCAC/-|frameshift_variant	REXO1|p.V222Hfs*6|1|0.03|ENSG00000079313|chr19:1828103-1828125|GGTGGCCTGGAGTTGTCCACCAC/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	437.28948974609375	3	436.889603	1307.64698	-0.47409	-0.00020713	0.66667	0.00029126	0.19258	8.4135E-05	436.8896185987483	26.552	0.40514	26.552	26.271	26.677	0					18	7	3	0	0	0	0.5901	1	7910	7910		37.771	11.774	1	6201300			47741	1692	34659	34940	46679	46679					0.005460777241978576
SEVELEQRRY	10	Unmodified	_SEVELEQRRY_					0	0	0		REXO1|p.V222Hfs*6|1|0.03|ENSG00000079313|chr19:1828103-1828125|GGTGGCCTGGAGTTGTCCACCAC/-|frameshift_variant;ENSG00000079313|ENST00000170168|REXO1	REXO1|p.V222Hfs*6|1|0.03|ENSG00000079313|chr19:1828103-1828125|GGTGGCCTGGAGTTGTCCACCAC/-|frameshift_variant	REXO1|p.V222Hfs*6|1|0.03|ENSG00000079313|chr19:1828103-1828125|GGTGGCCTGGAGTTGTCCACCAC/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	437.2891845703125	3	436.889603	1307.64698	-0.73209	-0.00031984	0.37354	0.0001632	-0.35855	-0.00015665	436.8895995942894	25.916	0.50892	26.576	26.296	26.805	0.65992					19	9	3	0	0	0	0.43087	1	8720	8720		48.073	32.534	1	7320200			47742	1692	34659	34940	46680	46680					0.005460777241978576
SEVELTSSQRW	11	Unmodified	_SEVELTSSQRW_					0	0	0		nc|ENSG00000139625|Q12852|MAP3K12;ENSG00000139625|ENST00000547488|MAP3K12;ENST00000552365.1_1_12:53874968-53878035:-|nuORF;ENST00000547020.1_1_12:53875694-53876159:-|nuORF;ENST00000551511.5_1_12:53874968-53876159:-|nuORF	nc|ENSG00000139625|Q12852|MAP3K12	nc|ENSG00000139625|Q12852|MAP3K12	MULTI-SECPEP	A375_MHC_IP_R1	1	661.7224731445312	2	661.322773	1320.63099	-0.31654	-0.00020933	-0.59076	-0.00039068	-0.9073	-0.00060001	661.322647563026	54.188	0.45185	54.188	53.912	54.364	0					17	8	3	0	0	0	0.1459	1	19371	19371		55.249	30.258	1	2192200			47743	5092	34660	34941	46681	46681					-0.016496285127232113
SEVELTSSQRW	11	Unmodified	_SEVELTSSQRW_					0	0	0		nc|ENSG00000139625|Q12852|MAP3K12;ENSG00000139625|ENST00000547488|MAP3K12;ENST00000552365.1_1_12:53874968-53878035:-|nuORF;ENST00000547020.1_1_12:53875694-53876159:-|nuORF;ENST00000551511.5_1_12:53874968-53876159:-|nuORF	nc|ENSG00000139625|Q12852|MAP3K12	nc|ENSG00000139625|Q12852|MAP3K12	MULTI-SECPEP	A375_MHC_IP_R2	2	661.7223510742188	2	661.322773	1320.63099	-1.4421	-0.00095368	0.34001	0.00022486	-1.1021	-0.00072882	661.8242848020784	53.446	0.46039	54.197	53.944	54.404	0.75105					14	8	2	0	0	0	0.16642	1	20237	20237		59.052	34.061	1	2224900			47744	5092	34660	34941	46682	46682					-0.016496285127232113
SEVERCNYARN	11	Unmodified	_SEVERCNYARN_					0	0	0			REV__PCDH12|p.A755V|1|0.33|ENSG00000113555|chr5:141955588-141955588|G/A|missense_variant	REV__PCDH12|p.A755V|1|0.33|ENSG00000113555|chr5:141955588-141955588|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	447.4989013671875	3	447.538575	1339.5939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.931	1	65.67	65.17	66.17	0.73811								0	0	0	0.16316	1	24618	24618		0.92553	0	1		+		47745	27722	34661	34942	46683	46683					-0.062316233301089596
SEVFDQVRPS	10	Unmodified	_SEVFDQVRPS_					0	0	0			REV__ENST00000264709.7_2_2:25454722-25454848:-|nuORF	REV__ENST00000264709.7_2_2:25454722-25454848:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	582.1535034179688	2	582.288202	1162.56185	-0.21213	-0.00012352	0.095371	5.5533E-05	-0.11676	-6.7985E-05	582.2883994536485	25.28	0.66141	25.28	25.002	25.664	0					15	12	2	0	0	0	0.92514	1	7318	7318		8.1555	4.559	1	2242300	+		47746	23241	34662	34943	46684	46684					-0.01292667741608966
SEVFLQRLM	9	Unmodified	_SEVFLQRLM_					0	0	0		ENSG00000135372|ENST00000257829|NAT10;nc|ENSG00000135372|Q9H0A0-2|NAT10	ENSG00000135372|ENST00000257829|NAT10	ENSG00000135372|ENST00000257829|NAT10	MULTI-SECPEP	A375_MHC_IP_R1	1	561.5407104492188	2	561.802434	1121.59032	-0.62349	-0.00035028	0.52527	0.0002951	-0.098214	-5.5177E-05	561.8027669067035	94.727	0.76385	94.727	94.497	95.261	0					22	14	3	0	0	0	0.13244	1	34785	34785		47.749	28.492	1	3655500			47747	4676	34663	34944	46685	46685					0.0343835863395725
SEVFLQRLM	9	Unmodified	_SEVFLQRLM_					0	0	0		ENSG00000135372|ENST00000257829|NAT10;nc|ENSG00000135372|Q9H0A0-2|NAT10	ENSG00000135372|ENST00000257829|NAT10	ENSG00000135372|ENST00000257829|NAT10	MULTI-SECPEP	A375_MHC_IP_R2	2	562.2017822265625	2	561.802434	1121.59032	-0.41932	-0.00023558	-0.38082	-0.00021395	-0.80014	-0.00044952	561.8022988494092	93.865	0.60691	94.61	94.262	94.869	0.74474					24	11	3	0	0	0	0.41731	1	35664	35664		53.833	36.89	1	2751600			47748	4676	34663	34944	46686	46686					0.0343835863395725
SEVGGLFFW	9	Unmodified	_SEVGGLFFW_					0	0	0		ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-MSMS	A375_MHC_IP_R1	1	521.655029296875	2	521.255643	1040.49673	-0.76911	-0.00040091	-0.2915	-0.00015195	-1.0606	-0.00055285	521.2554207020931	133.74	0.25325	133.74	133.61	133.86	0					6	4	2	0	0	0	0.43185	1	51600	51600		23.148	7.3012	1	6586400			47749	8201	34664	34945	46687	46687					-0.021896174768016863
SEVGGLFFW	9	Unmodified	_SEVGGLFFW_					0	0	0		ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-MSMS	A375_MHC_IP_R2	2	521.6555786132812	2	521.255643	1040.49673	-0.53689	-0.00027986	-0.066423	-3.4623E-05	-0.60331	-0.00031448	521.2555922145915	133.6	0.25189	133.76	133.6	133.85	0.16487					9	4	3	0	0	0	0.43185	1	52568	52568		23.148	5.0134	1	5161900			47750	8201	34664	34945	46688	46688					-0.021896174768016863
SEVGGLFFW	9	Unmodified	_SEVGGLFFW_					0	0	0		ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-SECPEP	A375_MHC_IP_R2	2	1042.302490234375	1	1041.50401	1040.49673	0.12899	0.00013435	-0.123	-0.00012811	0.0059901	6.2388E-06	1041.5035475812385	133.57	0.40471	133.74	133.55	133.96	0.16487					15	7	4	0	0	0	0.65246	1	52615	52615		21.747	2.3076	1	16335000			47751	8201	34664	34945	46689	46689					-0.021896174768016863
SEVGGLFFW	9	Unmodified	_SEVGGLFFW_					0	0	0		ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-MATCH	A375_MHC_IP_R1	1		1	1041.50401	1040.49673	-0.10585	-0.00011025	-0.12841	-0.00013374	-0.23426	-0.00024398	1041.5036597847154	133.74	0.3045	133.74	133.61	133.91	0	0.0014559	-1.7196E-06	NaN	21.747	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26277000			47752	8201	34664	34945							-0.021896174768016863
SEVGPFSSF	9	Unmodified	_SEVGPFSSF_					0	0	0			REV__nc|ENSG00000106823|O94769-2|ECM2	REV__nc|ENSG00000106823|O94769-2|ECM2	MULTI-SECPEP	A375_MHC_IP_R1	1	479.14495849609375	2	478.721633	955.428712	-0.28902	-0.00013836	-0.70137	-0.00033576	-0.99039	-0.00047412	478.72047690493406	82.282	0.76173	82.282	81.911	82.672	0					28	14	3	0	0	0	0.050875	1	30068	30068		64.236	18.215	1	1834300	+		47753	17468	34665	34946	46690	46690					-0.05078487127468634
SEVGPFSSF	9	Unmodified	_SEVGPFSSF_					0	0	0			REV__nc|ENSG00000106823|O94769-2|ECM2	REV__nc|ENSG00000106823|O94769-2|ECM2	MULTI-MATCH	A375_MHC_IP_R2	2		2	478.721633	955.428712	-0.62869	-0.00030097	-1.9229	-0.00092054	-2.5516	-0.0012215	478.7206206866202	81.561	0.85846	82.304	81.826	82.684	0.74293	0.011107	-0.0001591	NaN	64.236	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2358000	+		47754	17468	34665	34946							-0.05078487127468634
SEVGPGLP	8	Unmodified	_SEVGPGLP_					0	0	0		ENST00000421538.1_1_22:46439505-46440174:-|nuORF	ENST00000421538.1_1_22:46439505-46440174:-|nuORF	ENST00000421538.1_1_22:46439505-46440174:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	756.455322265625	1	755.393396	754.386119	-0.89667	-0.00067734	-0.12949	-9.7814E-05	-1.0262	-0.00077515	755.3933650837027	67.892	0.75949	67.892	67.5	68.26	0					24	14	2	0	0	0	0.77603	1	24561	24561		9.3474	0	1	5907900			47755	11740	34666	34947	46691	46691					-0.0008983746504327428
SEVGPVVSF	9	Unmodified	_SEVGPVVSF_					0	0	0		ENSG00000101811|ENST00000372972|CSTF2;nc|ENSG00000101811|P33240-2|CSTF2	ENSG00000101811|ENST00000372972|CSTF2	ENSG00000101811|ENST00000372972|CSTF2	MULTI-SECPEP	A375_MHC_IP_R1	1	461.1396789550781	2	460.739825	919.465098	-0.042109	-1.9401E-05	0.10928	5.035E-05	0.067173	3.0949E-05	460.73979695243645	92.357	0.81318	92.357	92.007	92.821	0					34	15	3	0	0	0	0.010923	1	33899	33899		128.37	96.06	1	8032300			47756	2324	34667	34948	46692	46692					0.002143897692462815
SEVGPVVSF	9	Unmodified	_SEVGPVVSF_					0	0	0		ENSG00000101811|ENST00000372972|CSTF2;nc|ENSG00000101811|P33240-2|CSTF2	ENSG00000101811|ENST00000372972|CSTF2	ENSG00000101811|ENST00000372972|CSTF2	MULTI-MSMS	A375_MHC_IP_R2	2	920.8726806640625	1	920.472374	919.465098	-0.23233	-0.00021386	-0.23258	-0.00021408	-0.46491	-0.00042794	920.472093539213	91.664	1.0125	92.398	91.97	92.983	0.73451					49	19	4	0	0	0	0.064406	1	35060	35060		58.679	34.005	1	48017000			47757	2324	34667	34948	46693	46693					0.002143897692462815
SEVGPVVSF	9	Unmodified	_SEVGPVVSF_					0	0	0		ENSG00000101811|ENST00000372972|CSTF2;nc|ENSG00000101811|P33240-2|CSTF2	ENSG00000101811|ENST00000372972|CSTF2	ENSG00000101811|ENST00000372972|CSTF2	MULTI-SECPEP	A375_MHC_IP_R2	2	461.139892578125	2	460.739825	919.465098	-0.35491	-0.00016352	-0.011879	-5.4734E-06	-0.36679	-0.00016899	460.7397603499952	91.615	0.65839	92.35	92.071	92.729	0.7345					32	12	4	0	0	0	0.011017	1	34810	34810		123.45	77.43	1	7923900			47758	2324	34667	34948	46694	46694					0.002143897692462815
SEVGPVVSF	9	Unmodified	_SEVGPVVSF_					0	0	0		ENSG00000101811|ENST00000372972|CSTF2;nc|ENSG00000101811|P33240-2|CSTF2	ENSG00000101811|ENST00000372972|CSTF2	ENSG00000101811|ENST00000372972|CSTF2	MULTI-MATCH	A375_MHC_IP_R1	1		1	920.472374	919.465098	0.10933	0.00010063	0.031911	2.9373E-05	0.14124	0.00013001	920.4723734246248	92.384	0.8634	92.384	92.007	92.871	0	-0.0073025	7.0777E-05	NaN	58.679	41	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48652000			47759	2324	34667	34948							0.002143897692462815
SEVGWRWRP	9	Unmodified	_SEVGWRWRP_					0	0	0		ENST00000403410.5_1_3:100237926-100237998:+|nuORF	ENST00000403410.5_1_3:100237926-100237998:+|nuORF	ENST00000403410.5_1_3:100237926-100237998:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	392.2922668457031	3	391.536835	1171.58868	-0.3845	-0.00015055	0.21466	8.4047E-05	-0.16984	-6.65E-05	391.5368787781724	37.863	0.66814	38.638	38.227	38.895	0.77451					17	12	2	0	0	0	0.7911	1	13922	13922		7.609	0	1	2097700			47760	11571	34668	34949	46695	46695					0.009744856602310392
SEVILHHEY	9	Unmodified	_SEVILHHEY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-SECPEP	A375_MHC_IP_R1	1	376.5892333984375	3	376.189101	1125.54547	-0.10801	-4.0631E-05	0.26775	0.00010072	0.15974	6.0094E-05	376.18920111011045	29.175	0.81081	29.175	28.745	29.555	0					43	15	5	0	0	0	0.096726	1	9078	9078		63.961	45.587	1	133600000			47761	5456	34669	34950	46696	46696					-0.012277489077177961
SEVILHHEY	9	Unmodified	_SEVILHHEY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-SECPEP	A375_MHC_IP_R1	1	564.1798095703125	2	563.780013	1125.54547	-0.86822	-0.00048949	0.23847	0.00013445	-0.62975	-0.00035504	563.7801172192399	29.175	0.55891	29.175	28.945	29.504	0					37	10	5	0	0	0	1.2505E-08	1	9073	9073		197.17	115.55	1	267650000			47762	5456	34669	34950	46697	46697					-0.012277489077177961
SEVILHHEY	9	Unmodified	_SEVILHHEY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	A375_MHC_IP_R2	2	564.6807861328125	2	563.780013	1125.54547	-0.97518	-0.00054979	0.028206	1.5902E-05	-0.94698	-0.00053389	563.7800050455222	28.459	0.60475	29.138	28.909	29.514	0.67857					38	11	5	0	0	0	0.26169	1	9994	9994		36.127	23.886	1	316950000			47763	5456	34669	34950	46698	46698					-0.012277489077177961
SEVILHHEY	9	Unmodified	_SEVILHHEY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-SECPEP	A375_MHC_IP_R2	2	375.9522705078125	3	376.189101	1125.54547	-0.22455	-8.4472E-05	0.052771	1.9852E-05	-0.17178	-6.462E-05	376.189088961309	28.46	1.2653	29.138	28.098	29.364	0.67857					44	24	5	0	0	0	0.11436	1	9802	9802		45.74	34.94	1	165300000			47764	5456	34669	34950	46699	46699					-0.012277489077177961
SEVILHHEYF	10	Unmodified	_SEVILHHEYF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	A375_MHC_IP_R1	1	425.612060546875	3	425.211906	1272.61389	0.007332	3.1176E-06	0.30075	0.00012788	0.30808	0.000131	425.21201403892076	54.418	0.45558	54.418	54.163	54.619	0					21	8	3	0	0	0	0.17808	1	19446	19446		51.488	40.961	1	2826300			47765	5456	34670	34951	46700	46700					-0.011515043278677695
SEVILHHEYF	10	Unmodified	_SEVILHHEYF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	A375_MHC_IP_R1	1	637.7136840820312	2	637.31422	1272.61389	-0.56686	-0.00036127	0.18255	0.00011634	-0.38431	-0.00024492	637.3143280467592	54.389	0.40583	54.389	54.213	54.619	0					11	7	2	0	0	0	0.33943	1	19496	19496		43.772	30.9	1	2651700			47766	5456	34670	34951	46701	46701					-0.011515043278677695
SEVILHHEYF	10	Unmodified	_SEVILHHEYF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	A375_MHC_IP_R2	2	425.6120300292969	3	425.211906	1272.61389	-0.67891	-0.00028868	0.28681	0.00012195	-0.3921	-0.00016673	425.21202556951005	53.584	0.46122	54.335	54.147	54.609	0.75105					16	8	3	0	0	0	0.24749	2	20235	20235;20286		44.392	35.148	1	3366100			47767	5456	34670	34951	46702;46703	46702					-0.011515043278677695
SEVILHHEYF	10	Unmodified	_SEVILHHEYF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MATCH	A375_MHC_IP_R2	2		2	637.31422	1272.61389	-1.285	-0.00081896	0.70006	0.00044616	-0.58496	-0.0003728	637.3142644928794	53.622	0.35797	54.373	54.147	54.505	0.75105	-0.0082355	0.00055821	NaN	43.772	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1346800			47768	5456	34670	34951							-0.011515043278677695
SEVKGLDAF	9	Unmodified	_SEVKGLDAF_					0	0	0		ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	MULTI-SECPEP	A375_MHC_IP_R1	1	483.6740417480469	2	483.250557	964.486562	-0.26458	-0.00012786	-0.65848	-0.00031821	-0.92306	-0.00044607	483.2503128327085	57.063	0.35746	57.063	56.905	57.263	0					11	6	2	0	0	0	0.40377	1	20475	20475		41.956	15.687	1	2451300			47769	1049	34671	34952	46704	46704					0.002897747979545784
SEVKGLDAF	9	Unmodified	_SEVKGLDAF_					0	0	0		ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6499938964844	2	483.250557	964.486562	-0.86597	-0.00041848	-0.8301	-0.00040114	-1.6961	-0.00081962	483.250414214817	56.224	0.61272	56.974	56.693	57.306	0.75015					15	11	2	0	0	0	0.50484	1	21281	21281		28.495	5.7582	1	1902400			47770	1049	34671	34952	46705	46705					0.002897747979545784
SEVKILTEEI	10	Unmodified	_SEVKILTEEI_					0	0	0		ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	MULTI-SECPEP	A375_MHC_IP_R2	2	581.20166015625	2	580.824086	1159.63362	-0.30515	-0.00017724	1.1233	0.00065246	0.81818	0.00047522	580.8241904531735	76.603	0.45745	77.344	77.095	77.553	0.74052					10	8	2	0	0	0	0.91556	1	29036	29036		10.074	4.3421	1	1724500			47771	5115	34672	34953	46706	46706					0.060188268922502175
SEVKLYQQ	8	Unmodified	_SEVKLYQQ_					0	0	0			REV__nc|ENSG00000088826|Q9NWM0-5|SMOX	REV__nc|ENSG00000088826|Q9NWM0-5|SMOX	MSMS	A375_MHC_IP_R1	1	497.68408203125	2	497.763832	993.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.719	1	50.719	50.219	51.219	0								0	0	0	0.16876	1	17979	17979		32.305	1.0371	1		+		47772	16891	34673	34954	46707	46707					0.016094636892944436
SEVKPKEAI	9	Unmodified	_SEVKPKEAI_					0	0	0			REV__nc|ENSG00000121270|Q96J66-2|ABCC11	REV__nc|ENSG00000121270|Q96J66-2|ABCC11	MULTI-SECPEP	A375_MHC_IP_R2	2	501.18695068359375	2	500.787307	999.560061	-0.53017	-0.0002655	-0.028183	-1.4114E-05	-0.55835	-0.00027961	500.7873397506468	42.01	0.40898	42.785	42.607	43.016	0.77451					13	7	2	0	0	0	0.55359	1	15663	15663		28.487	3.0875	1	3860200	+		47773	18153	34674	34955	46708	46708					0.060263232404167866
SEVKQLAGGN	10	Unmodified	_SEVKQLAGGN_					0	0	0		ENST00000541546.5_1_12:15109201-15114476:-|nuORF	ENST00000541546.5_1_12:15109201-15114476:-|nuORF	ENST00000541546.5_1_12:15109201-15114476:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.16455078125	2	501.764363	1001.51417	-0.56114	-0.00028156	0.40181	0.00020162	-0.15933	-7.9944E-05	501.7645947344241	27.073	0.3514	27.073	26.878	27.229	0					10	6	2	0	0	0	0.69172	1	8181	8181		19.257	1.1106	1	2634300			47774	13286	34675	34956	46709	46709					0.013476780582095671
SEVLFSGDETY	11	Unmodified	_SEVLFSGDETY_					0	0	0		ENST00000472860.1_1_3:195000059-195000408:-|nuORF	ENST00000472860.1_1_3:195000059-195000408:-|nuORF	ENST00000472860.1_1_3:195000059-195000408:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	624.677978515625	2	623.777333	1245.54011	-0.68489	-0.00042722	0.74276	0.00046332	0.05787	3.6098E-05	624.2785584209677	69.998	2.2323	70.732	69.12	71.352	0.73421					69	43	2	0	0	0	0.73016	1	26131	26131		8.7454	1.4562	1	2289700			47775	12380	34676	34957	46710	46710					-0.07283517280825436
SEVLFSGDETY	11	Unmodified	_SEVLFSGDETY_					0	0	0		ENST00000472860.1_1_3:195000059-195000408:-|nuORF	ENST00000472860.1_1_3:195000059-195000408:-|nuORF	ENST00000472860.1_1_3:195000059-195000408:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	624.1949462890625	2	623.777333	1245.54011	-0.68462	-0.00042705	-2.7512	-0.0017161	-3.4358	-0.0021432	624.2784504939468	87.67	1.5173	88.402	88.016	89.533	0.7318					36	29	2	0	0	0	0.9754	1	33531	33531		12.241	0	1	2351900			47776	12380	34676	34957	46711	46711					-0.07283517280825436
SEVLFTSTSYF	11	Unmodified	_SEVLFTSTSYF_					0	0	0			REV__ENST00000345732.8_1_11:60236310-60236409:+|nuORF	REV__ENST00000345732.8_1_11:60236310-60236409:+|nuORF	MSMS	A375_MHC_IP_R2	2	640.699951171875	2	640.805894	1279.59723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.467	1	60.214	59.714	60.714	0.74714								0	0	0	0.15541	1	22506	22506		17.113	6.3134	1		+		47777	23771	34677	34958	46712	46712					-0.031380500044633663
SEVLKYQEVEG	11	Unmodified	_SEVLKYQEVEG_					0	0	0			REV__ENSG00000225968|ENST00000424383|ELFN1	REV__ENSG00000225968|ENST00000424383|ELFN1	MULTI-MSMS	A375_MHC_IP_R1	1	641.2219848632812	2	640.822075	1279.6296	-0.33196	-0.00021273	0.23516	0.00015069	-0.096805	-6.2035E-05	640.8222372401888	108.59	0.60815	108.59	108.31	108.92	0					20	11	3	0	0	0	0.57844	1	39846	39846		24.991	5.629	1	3179300	+		47778	22719	34678	34959	46713	46713					0.0009673739853042207
SEVLLSAMEL	10	Unmodified	_SEVLLSAMEL_					0	0	0		nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;ENST00000374161.7_3_10:50011336-50031259:+|nuORF	nc|ENSG00000128815|Q6ZS81-5|WDFY4	nc|ENSG00000128815|Q6ZS81-5|WDFY4	MULTI-SECPEP	A375_MHC_IP_R1	1	546.1405029296875	2	546.286282	1090.55801	-0.53416	-0.0002918	2.5235	0.0013785	1.9893	0.0010867	546.7902560378277	74.579	1.4181	74.579	73.995	75.413	0					39	27	3	0	0	0	0.83355	1	27023	27023		17.113	3.605	1	1788200			47779	4164	34679	34960	46714	46714					0.01635526440304602
SEVLQDLRF	9	Unmodified	_SEVLQDLRF_					0	0	0		ENST00000600997.5_1_19:18702792-18702987:+|nuORF;ENST00000598375.5_1_19:18701561-18702987:+|nuORF;nc|ENSG00000006015|Q96EN9-3|REX1BD;ENSG00000006015|ENST00000358607|REX1BD;ENST00000597371.1_1_19:18699887-18702987:+|nuORF	ENST00000600997.5_1_19:18702792-18702987:+|nuORF	ENST00000600997.5_1_19:18702792-18702987:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	554.1844482421875	2	553.795663	1105.57677	-0.43903	-0.00024313	0.030026	1.6628E-05	-0.409	-0.0002265	553.795692940679	88.961	0.65995	88.961	88.663	89.323	0					26	12	3	0	0	0	0.077986	1	32685	32685		89.401	30.722	1	4849300			47780	13869	34680	34961	46715	46715					0.028208241263882883
SEVLQDLRF	9	Unmodified	_SEVLQDLRF_					0	0	0		ENST00000600997.5_1_19:18702792-18702987:+|nuORF;ENST00000598375.5_1_19:18701561-18702987:+|nuORF;nc|ENSG00000006015|Q96EN9-3|REX1BD;ENSG00000006015|ENST00000358607|REX1BD;ENST00000597371.1_1_19:18699887-18702987:+|nuORF	ENST00000600997.5_1_19:18702792-18702987:+|nuORF	ENST00000600997.5_1_19:18702792-18702987:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	554.1951904296875	2	553.795663	1105.57677	-0.71339	-0.00039507	0.3727	0.0002064	-0.34069	-0.00018867	553.7956587718539	88.186	0.60737	88.918	88.621	89.228	0.7318					29	11	4	0	0	0	0.11849	1	33532	33532		70.332	28.492	1	4694500			47781	13869	34680	34961	46716	46716					0.028208241263882883
SEVNIPLSL	9	Unmodified	_SEVNIPLSL_					0	0	0		ENSG00000088038|ENST00000221232|CNOT3	ENSG00000088038|ENST00000221232|CNOT3	ENSG00000088038|ENST00000221232|CNOT3	MULTI-MSMS	A375_MHC_IP_R2	2	486.67388916015625	2	486.274032	970.533512	-0.42461	-0.00020648	0.29106	0.00014154	-0.13355	-6.4941E-05	486.27404322816557	115.61	0.45395	116.3	116.04	116.49	0.69					14	8	2	0	0	0	0.0022058	1	43594	43594		142.08	7.784	1	4648500			47782	1883	34681	34962	46717	46717					0.047066343491110274
SEVPFSKRY	9	Unmodified	_SEVPFSKRY_					0	0	0		ENST00000484916.1_1_14:19468684-19468777:+|nuORF;ENSG00000116251|ENST00000234875|RPL22	ENST00000484916.1_1_14:19468684-19468777:+|nuORF	ENST00000484916.1_1_14:19468684-19468777:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	556.6700439453125	2	556.790381	1111.56621	-0.88944	-0.00049523	-0.27622	-0.00015379	-1.1657	-0.00064902	556.7904173133229	30.003	0.50298	30.003	29.848	30.351	0					17	9	2	0	0	0	0.59859	1	9427	9427		20.415	4.5674	1	8632900			47783	3389	34682	34963	46718	46718					0.01488841471973501
SEVPFSKRY	9	Unmodified	_SEVPFSKRY_					0	0	0		ENST00000484916.1_1_14:19468684-19468777:+|nuORF;ENSG00000116251|ENST00000234875|RPL22	ENST00000484916.1_1_14:19468684-19468777:+|nuORF	ENST00000484916.1_1_14:19468684-19468777:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	371.9764709472656	3	371.529346	1111.56621	-0.015083	-5.6038E-06	0.17222	6.3985E-05	0.15714	5.8381E-05	371.5293259733626	29.989	0.90528	29.989	29.748	30.653	0					51	17	4	0	0	0	0.65527	1	9509	9509		12.175	5.1377	1	31842000			47784	3389	34682	34963	46719	46719					0.01488841471973501
SEVPFSKRY	9	Unmodified	_SEVPFSKRY_					0	0	0		ENST00000484916.1_1_14:19468684-19468777:+|nuORF;ENSG00000116251|ENST00000234875|RPL22	ENST00000484916.1_1_14:19468684-19468777:+|nuORF	ENST00000484916.1_1_14:19468684-19468777:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	556.7545776367188	2	556.790381	1111.56621	-1.5704	-0.00087436	0.25545	0.00014223	-1.3149	-0.00073213	556.7905641283479	29.337	0.60444	30.036	29.83	30.434	0.69872					25	11	3	0	0	0	0.64945	1	10173	10173		16.149	0	1	5928200			47785	3389	34682	34963	46720	46720					0.01488841471973501
SEVPFSKRY	9	Unmodified	_SEVPFSKRY_					0	0	0		ENST00000484916.1_1_14:19468684-19468777:+|nuORF;ENSG00000116251|ENST00000234875|RPL22	ENST00000484916.1_1_14:19468684-19468777:+|nuORF	ENST00000484916.1_1_14:19468684-19468777:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	371.92938232421875	3	371.529346	1111.56621	-0.37447	-0.00013913	0.25735	9.5612E-05	-0.11712	-4.3514E-05	371.52934641215677	29.336	0.85777	30.034	29.78	30.638	0.69872					46	16	6	0	0	0	0.61452	1	10209	10209		19.626	15.75	1	26061000			47786	3389	34682	34963	46721	46721					0.01488841471973501
SEVPGSIPNSW	11	Unmodified	_SEVPGSIPNSW_					0	0	0		nc|ENSG00000076242|P40692-2|MLH1;nc|ENSG00000076242|P40692-3|MLH1;ENSG00000076242|ENST00000231790|MLH1	nc|ENSG00000076242|P40692-2|MLH1	nc|ENSG00000076242|P40692-2|MLH1	MULTI-MSMS	A375_MHC_IP_R1	1	587.2308349609375	2	586.782753	1171.55095	-0.18427	-0.00010813	-0.64638	-0.00037928	-0.83065	-0.00048741	586.7822104654772	88.444	0.61109	88.444	88.103	88.714	0					17	11	2	0	0	0	0.21365	2	32402	32402;32494		53.404	34.147	1	2467300			47787	1632	34683	34964	46722;46723	46722					-0.0279607011589178
SEVPGSIPNSW	11	Unmodified	_SEVPGSIPNSW_					0	0	0		nc|ENSG00000076242|P40692-2|MLH1;nc|ENSG00000076242|P40692-3|MLH1;ENSG00000076242|ENST00000231790|MLH1	nc|ENSG00000076242|P40692-2|MLH1	nc|ENSG00000076242|P40692-2|MLH1	MULTI-MSMS	A375_MHC_IP_R2	2	587.1820678710938	2	586.782753	1171.55095	-0.47755	-0.00028022	1.1655	0.00068388	0.68791	0.00040366	586.7834730983577	87.798	0.65886	88.53	88.266	88.925	0.7318					17	12	2	0	0	0	0.01348	1	33414	33414		91.085	62.003	1	1700900			47788	1632	34683	34964	46724	46724					-0.0279607011589178
SEVPILIKS	9	Unmodified	_SEVPILIKS_					0	0	0			REV__ENST00000367696.6_1_1:173962170-173991250:-|nuORF	REV__ENST00000367696.6_1_1:173962170-173991250:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	492.7013854980469	2	493.30005	984.585547	-0.32385	-0.00015976	0.022864	1.1279E-05	-0.30099	-0.00014848	493.30007123491856	63.728	0.51157	63.728	63.427	63.939	0					16	9	2	0	0	0	0.69381	1	23049	23049		20.415	0	1	1776300	+		47789	23979	34684	34965	46725	46725					0.09263797762866943
SEVPIRLDY	9	Unmodified	_SEVPIRLDY_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B;ENST00000261834.9_1_14:96756535-96777546:-|nuORF	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-MSMS	A375_MHC_IP_R1	1	546.2286987304688	2	546.290214	1090.56587	-0.53515	-0.00029235	0.14425	7.8803E-05	-0.3909	-0.00021354	546.2902618856801	73.362	1.4692	73.362	72.728	74.197	0					83	28	5	0	0	0	0.0089117	2	26644	26644;26650		97.741	54.958	1	110260000			47790	1419	34685	34966	46726;46727	46726					0.02421421752092101
SEVPIRLDY	9	Unmodified	_SEVPIRLDY_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B;ENST00000261834.9_1_14:96756535-96777546:-|nuORF	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-MSMS	A375_MHC_IP_R2	2	546.6900024414062	2	546.290214	1090.56587	-0.8962	-0.00048958	0.076109	4.1578E-05	-0.82009	-0.00044801	546.2901977435647	72.569	1.2702	73.305	72.922	74.192	0.73541					80	24	5	0	0	0	0.052747	1	27483	27483		63.227	30.922	1	116620000			47791	1419	34685	34966	46728	46728					0.02421421752092101
SEVPPELDPW	10	Unmodified	_SEVPPELDPW_					0	0	0		ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	MSMS	A375_MHC_IP_R1	1	584.6826782226562	2	584.779679	1167.5448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.425	1	90.425	89.925	90.925	0								0	0	0	0.15308	1	33230	33230		10.824	0.75	1				47792	2837	34686	34967	46729	46729					-0.0322658834743379
SEVQVLGR	8	Unmodified	_SEVQVLGR_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;HECTD4|p.T2131Nfs*17|1|0.26|ENSG00000173064|chr12:112228151-112228152|-/G|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MSMS	A375_MHC_IP_R1	1	444.6522216796875	2	444.250892	886.48723	-0.41732	-0.00018539	1.5628	0.00069428	1.1455	0.00050889	444.25238432469627	142.97	0.20056	142.97	142.84	143.04	0					9	3	4	0	0	0	0.7773	1	54875	54875		4.756	0	1	2951900			47793	7762	34687	34968	46730	46730					0.03944614237684618
SEVRLAEW	8	Unmodified	_SEVRLAEW_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN	REV__ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	A375_MHC_IP_R2	2	494.6764221191406	2	495.256174	988.497795	-0.67832	-0.00033594	0.24393	0.00012081	-0.43439	-0.00021513	495.2564574155605	54.564	0.40534	55.315	55.118	55.523	0.75075					13	7	2	0	0	0	0.91495	1	20657	20657		4.3292	0	1	1592200	+		47794	19819	34688	34969	46731	46731					0.0030859689210274155
SEVSTVLKL	9	Unmodified	_SEVSTVLKL_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;nc|ENSG00000123143|Q16512-2|PKN1	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-SECPEP	A375_MHC_IP_R1	1	488.689208984375	2	488.289682	974.564812	-0.065216	-3.1844E-05	-2.6273	-0.0012829	-2.6925	-0.0013147	488.2881782029149	71.649	0.50175	71.649	71.364	71.866	0					13	9	2	0	0	0	0.34746	1	26055	26055		38.176	16.639	1	5177600			47795	3829	34689	34970	46732	46732					0.0765120738318501
SEVTDNPLY	9	Unmodified	_SEVTDNPLY_					0	0	0			REV__ENSG00000146350|ENST00000398212|TBC1D32	REV__ENSG00000146350|ENST00000398212|TBC1D32	MULTI-SECPEP	A375_MHC_IP_R2	2	519.985595703125	2	519.242929	1036.47131	-0.67972	-0.00035294	0.18143	9.4208E-05	-0.49829	-0.00025873	519.2427732996243	76.746	0.60839	77.486	77.146	77.755	0.74052					17	11	2	0	0	0	0.71541	1	29119	29119		7.2892	0	1	792550	+		47796	19528	34690	34971	46733	46733					-0.045471367898926474
SEVTVTNTHLF	11	Unmodified	_SEVTVTNTHLF_					0	0	0		ACCSL|p.P298L|1|0.49|ENSG00000205126|chr11:44053013-44053013|C/T|missense_variant	ACCSL|p.P298L|1|0.49|ENSG00000205126|chr11:44053013-44053013|C/T|missense_variant	ACCSL|p.P298L|1|0.49|ENSG00000205126|chr11:44053013-44053013|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	416.6118469238281	3	416.547065	1246.61937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.12	1	57.12	56.62	57.62	0								0	0	0	0.16232	1	20481	20481		6.6235	2.5068	1				47797	30	34691	34972	46734	46734					0.005921744639408644
SEVVAIKKM	9	Oxidation (M)	_SEVVAIKKM(Oxidation (M))_		SEVVAIKKM(1)		SEVVAIKKM(80)	0	0	1		ENSG00000135090|ENST00000392533|TAOK3;TAOK2|p.Q124Rfs*3|1|0.21|ENSG00000149930|chr16:29978989-29978989|T/-|frameshift_variant;nc|ENSG00000149930|Q9UL54-2|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;ENSG00000149930|ENST00000308893|TAOK2	ENSG00000135090|ENST00000392533|TAOK3;nc|ENSG00000149930|Q9UL54-2|TAOK2	nc|ENSG00000149930|Q9UL54-2|TAOK2	MULTI-MSMS	A375_MHC_IP_R1	1	511.19134521484375	2	510.791535	1019.56852	-0.54525	-0.00027851	0.26333	0.00013451	-0.28192	-0.000144	510.79164824153924	19.66	0.35608	19.66	19.471	19.827	0					17	6	4	0	0	0	0.024574	1	4935	4935		79.596	48.96	1	4391600			47798	5834;4643	34692	34973	46735	46735		243			0.05951553885404337
SEVVAIKKM	9	Oxidation (M)	_SEVVAIKKM(Oxidation (M))_		SEVVAIKKM(1)		SEVVAIKKM(64)	0	0	1		ENSG00000135090|ENST00000392533|TAOK3;TAOK2|p.Q124Rfs*3|1|0.21|ENSG00000149930|chr16:29978989-29978989|T/-|frameshift_variant;nc|ENSG00000149930|Q9UL54-2|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;ENSG00000149930|ENST00000308893|TAOK2	ENSG00000135090|ENST00000392533|TAOK3;nc|ENSG00000149930|Q9UL54-2|TAOK2	nc|ENSG00000149930|Q9UL54-2|TAOK2	MULTI-MSMS	A375_MHC_IP_R1	1	511.1911315917969	2	510.791535	1019.56852	-0.098521	-5.0324E-05	-0.42794	-0.00021859	-0.52646	-0.00026891	510.79130432235746	22.183	0.96241	22.183	21.962	22.924	0					30	18	3	0	0	0	0.050868	1	5899	5899		63.961	39.94	1	4848100			47799	5834;4643	34692	34973	46736	46736		243			0.05951553885404337
SEVVAIKKM	9	Oxidation (M)	_SEVVAIKKM(Oxidation (M))_		SEVVAIKKM(1)		SEVVAIKKM(64)	0	0	1		ENSG00000135090|ENST00000392533|TAOK3;TAOK2|p.Q124Rfs*3|1|0.21|ENSG00000149930|chr16:29978989-29978989|T/-|frameshift_variant;nc|ENSG00000149930|Q9UL54-2|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;ENSG00000149930|ENST00000308893|TAOK2	ENSG00000135090|ENST00000392533|TAOK3;nc|ENSG00000149930|Q9UL54-2|TAOK2	nc|ENSG00000149930|Q9UL54-2|TAOK2	MULTI-MSMS	A375_MHC_IP_R2	2	511.19146728515625	2	510.791535	1019.56852	-1.0893	-0.0005564	-0.080494	-4.1115E-05	-1.1698	-0.00059752	510.7915654049368	21.718	0.61207	22.337	22.132	22.744	0.61932					23	11	3	0	0	0	0.050868	1	6844	6844		63.961	39.94	1	3423400			47800	5834;4643	34692	34973	46737	46737		243			0.05951553885404337
SEVVAIKKM	9	Oxidation (M)	_SEVVAIKKM(Oxidation (M))_					0	0	1		ENSG00000135090|ENST00000392533|TAOK3;TAOK2|p.Q124Rfs*3|1|0.21|ENSG00000149930|chr16:29978989-29978989|T/-|frameshift_variant;nc|ENSG00000149930|Q9UL54-2|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;ENSG00000149930|ENST00000308893|TAOK2	ENSG00000135090|ENST00000392533|TAOK3;nc|ENSG00000149930|Q9UL54-2|TAOK2	nc|ENSG00000149930|Q9UL54-2|TAOK2	MULTI-MATCH	A375_MHC_IP_R2	2		2	510.791535	1019.56852	-1.0143	-0.00051808	-0.024593	-1.2562E-05	-1.0389	-0.00053065	510.79137172506694	18.905	0.13086	19.508	19.452	19.583	0.60308	-0.075588	-0.00022873	NaN	79.596	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5741500			47801	5834;4643	34692	34973				243			0.05951553885404337
SEVVAIKKM	9	Unmodified	_SEVVAIKKM_					0	0	0		ENSG00000135090|ENST00000392533|TAOK3;TAOK2|p.Q124Rfs*3|1|0.21|ENSG00000149930|chr16:29978989-29978989|T/-|frameshift_variant;nc|ENSG00000149930|Q9UL54-2|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;ENSG00000149930|ENST00000308893|TAOK2	ENSG00000135090|ENST00000392533|TAOK3;nc|ENSG00000149930|Q9UL54-2|TAOK2	nc|ENSG00000149930|Q9UL54-2|TAOK2	MULTI-SECPEP	A375_MHC_IP_R1	1	503.1938781738281	2	502.794078	1003.5736	-0.58726	-0.00029527	-0.061521	-3.0932E-05	-0.64878	-0.0003262	502.7940911788573	27.962	0.45234	27.962	27.786	28.238	0					18	8	3	0	0	0	0.23894	1	8576	8576		55.503	38.39	1	7498400			47802	5834;4643	34692	34974	46738	46738					0.07195857748013168
SEVVAIKKM	9	Unmodified	_SEVVAIKKM_					0	0	0		ENSG00000135090|ENST00000392533|TAOK3;TAOK2|p.Q124Rfs*3|1|0.21|ENSG00000149930|chr16:29978989-29978989|T/-|frameshift_variant;nc|ENSG00000149930|Q9UL54-2|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;ENSG00000149930|ENST00000308893|TAOK2	ENSG00000135090|ENST00000392533|TAOK3;nc|ENSG00000149930|Q9UL54-2|TAOK2	nc|ENSG00000149930|Q9UL54-2|TAOK2	MULTI-SECPEP	A375_MHC_IP_R2	2	503.19390869140625	2	502.794078	1003.5736	-0.57346	-0.00028833	-0.18064	-9.0825E-05	-0.7541	-0.00037916	502.7939510005167	27.338	0.40791	28.016	27.792	28.2	0.67857					18	7	3	0	0	0	0.11849	1	9322	9322		70.332	46.311	1	7907600			47803	5834;4643	34692	34974	46739	46739					0.07195857748013168
SEVVEMVK	8	Unmodified	_SEVVEMVK_					0	0	0		nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MULTI-MSMS	A375_MHC_IP_R1	1	921.4595947265625	1	920.475745	919.468469	-0.047013	-4.3275E-05	0.28629	0.00026352	0.23928	0.00022025	920.4761376849593	102.94	0.40741	102.94	102.76	103.17	0					11	7	2	0	0	0	0.77717	1	37806	37806		5.2307	0	1	1248300			47804	3898	34693	34975	46740	46740					0.005513165516049412
SEVVEMVK	8	Unmodified	_SEVVEMVK_					0	0	0		nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MULTI-MATCH	A375_MHC_IP_R2	2		1	920.475745	919.468469	-0.30227	-0.00027823	0.60358	0.00055558	0.30131	0.00027735	920.4758168749073	102.18	0.35506	102.95	102.77	103.12	0.76428	0.0052149	0.00015832	NaN	5.2307	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1843800			47805	3898	34693	34975							0.005513165516049412
SEVVLEGKF	9	Unmodified	_SEVVLEGKF_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;ENST00000461423.1_1_20:37137783-37175090:+|nuORF	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-MSMS	A375_MHC_IP_R1	1	504.6733093261719	2	504.274032	1006.53351	-0.34908	-0.00017603	-0.1819	-9.1725E-05	-0.53097	-0.00026775	504.2737227517825	59.886	0.76248	59.886	59.448	60.21	0					26	14	2	0	0	0	0.095851	1	21487	21487		51.415	26.424	1	1629900			47806	7511	34694	34976	46741	46741					0.0305063434910835
SEVVLEGKF	9	Unmodified	_SEVVLEGKF_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;ENST00000461423.1_1_20:37137783-37175090:+|nuORF	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-MSMS	A375_MHC_IP_R2	2	504.67327880859375	2	504.274032	1006.53351	-1.0572	-0.00053312	-0.18232	-9.1937E-05	-1.2395	-0.00062506	504.2738423033746	58.869	0.81137	59.616	59.336	60.148	0.74714					27	15	2	0	0	0	0.073067	1	22283	22283		55.503	27.874	1	3386400			47807	7511	34694	34976	46742	46742					0.0305063434910835
SEVVTLWY	8	Unmodified	_SEVVTLWY_					0	0	0		ENST00000451080.5_1_2:202672326-202741280:+|nuORF;nc|ENSG00000138395|Q96Q40-6|CDK15;ENST00000488419.1_1_2:202671387-202725552:+|nuORF;nc|ENSG00000138395|Q96Q40-4|CDK15;nc|ENSG00000138395|Q96Q40-3|CDK15;nc|ENSG00000138395|Q96Q40-5|CDK15;ENSG00000138395|ENST00000652192|CDK15	ENST00000451080.5_1_2:202672326-202741280:+|nuORF	ENST00000451080.5_1_2:202672326-202741280:+|nuORF	MSMS	A375_MHC_IP_R2	2	498.65606689453125	2	498.755475	995.496398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.31	1	94.049	93.549	94.549	0.73902								0	0	0	0.16876	1	35474	35474		32.117	1.8922	1				47808	4989	34695	34977	46743	46743					-0.0015303719666235338
SEVWPSREW	9	Unmodified	_SEVWPSREW_					0	0	0			REV__ENSG00000105398|ENST00000222002|SULT2A1	REV__ENSG00000105398|ENST00000222002|SULT2A1	MULTI-MSMS	A375_MHC_IP_R2	2	588.6814575195312	2	588.277638	1174.54072	-0.86055	-0.00050624	2.0218	0.0011894	1.1612	0.00068313	588.2782803551718	71.736	1.0114	72.471	72.111	73.122	0.73421					27	19	2	0	0	0	0.58047	1	27143	27143		15.847	3.3156	1	4082400	+		47809	17379	34696	34978	46744	46744					-0.03956633050484015
SEWDCMCVQ	9	Unmodified	_SEWDCMCVQ_					0	0	0		nc|ENSG00000186891|Q9Y5U5-3|TNFRSF18;ENSG00000186891|ENST00000379268|TNFRSF18;nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	nc|ENSG00000186891|Q9Y5U5-3|TNFRSF18	nc|ENSG00000186891|Q9Y5U5-3|TNFRSF18	MULTI-SECPEP	A375_MHC_IP_R1	1	550.154296875	2	550.69592	1099.37729	-0.55245	-0.00030423	1.5088	0.00083091	0.95639	0.00052668	550.6968293139447	75.639	0.45241	75.639	75.413	75.865	0					11	8	2	0	0	0	0.78348	1	27602	27602		1.8442	1.3195	1	1546800			47810	8789	34697	34979	46745	46745					-0.1684263847969305
SEWDIKKLT	9	Unmodified	_SEWDIKKLT_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.M1167Ffs*18|1|0.44|ENSG00000023516|chr13:42302242-42302251|CTCATGCGAT/-|frameshift_variant	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	MULTI-SECPEP	A375_MHC_IP_R1	1	374.2729797363281	3	373.873001	1118.59717	0.17884	6.6863E-05	0.3117	0.00011654	0.49054	0.0001834	373.87295721143374	53.134	0.50502	53.134	52.847	53.352	0					15	9	2	0	0	0	0.63763	1	18941	18941		12.856	3.8797	1	1945800			47811	1078	34698	34980	46746	46746					0.04261994786179457
SEWDIKKLT	9	Unmodified	_SEWDIKKLT_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.M1167Ffs*18|1|0.44|ENSG00000023516|chr13:42302242-42302251|CTCATGCGAT/-|frameshift_variant	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	MULTI-MSMS	A375_MHC_IP_R2	2	374.27301025390625	3	373.873001	1118.59717	-0.028723	-1.0739E-05	0.21615	8.0812E-05	0.18743	7.0074E-05	373.87297975683515	52.354	0.76071	53.106	52.626	53.386	0.75225					20	14	3	0	0	0	0.45931	1	19758	19758		21.799	8.9269	1	3478100			47812	1078	34698	34980	46747	46747					0.04261994786179457
SEWDKREIL	9	Unmodified	_SEWDKREIL_					0	0	0		ENST00000577772.5_1_18:66504000-66564823:+|nuORF;nc|ENSG00000150636|Q68D86-2|CCDC102B;ENSG00000150636|ENST00000360242|CCDC102B;ENST00000577800.1_1_18:66513601-66564710:+|nuORF	ENST00000577772.5_1_18:66504000-66564823:+|nuORF	ENST00000577772.5_1_18:66504000-66564823:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	392.932861328125	3	392.540022	1174.59824	0.55532	0.00021799	-0.18108	-7.1082E-05	0.37424	0.0001469	392.53995429545523	48.681	0.60749	48.681	48.426	49.033	0					16	11	2	0	0	0	0.50892	1	17230	17230		14.218	3.3192	1	902070			47813	5855	34699	34981	46748	46748					0.01792209155087221
SEWDKREIL	9	Unmodified	_SEWDKREIL_					0	0	0		ENST00000577772.5_1_18:66504000-66564823:+|nuORF;nc|ENSG00000150636|Q68D86-2|CCDC102B;ENSG00000150636|ENST00000360242|CCDC102B;ENST00000577800.1_1_18:66513601-66564710:+|nuORF	ENST00000577772.5_1_18:66504000-66564823:+|nuORF	ENST00000577772.5_1_18:66504000-66564823:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	392.540022	1174.59824	0.55532	0.00021799	-0.18108	-7.1082E-05	0.37424	0.0001469	392.53995429545523	48.681	0.60749	48.681	48.426	49.033	0	-0.038289	-0.00022691	NaN	14.218	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	902070			47814	5855	34699	34981							0.01792209155087221
SEWDKREIL	9	Unmodified	_SEWDKREIL_					0	0	0		ENST00000577772.5_1_18:66504000-66564823:+|nuORF;nc|ENSG00000150636|Q68D86-2|CCDC102B;ENSG00000150636|ENST00000360242|CCDC102B;ENST00000577800.1_1_18:66513601-66564710:+|nuORF	ENST00000577772.5_1_18:66504000-66564823:+|nuORF	ENST00000577772.5_1_18:66504000-66564823:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	392.540022	1174.59824	-0.08337	-3.2726E-05	0.19682	7.7258E-05	0.11345	4.4532E-05	392.5400646003046	47.997	0.5041	48.758	48.429	48.933	0.76128	0.038289	0.00021811	NaN	14.218	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1160900			47815	5855	34699	34981							0.01792209155087221
SEWFWWHWQGE	11	Unmodified	_SEWFWWHWQGE_					0	0	0		ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	MSMS	A375_MHC_IP_R1	1	526.637939453125	3	526.558076	1576.6524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.123	1	89.123	88.623	89.623	0								0	0	0	0.16334	1	32737	32737		0.45452	0	1				47816	8211	34700	34982	46749	46749					-0.11286198693346705
SEWIEGVSF	9	Unmodified	_SEWIEGVSF_					0	0	0		TMEM2|p.L405F|1|0.53|ENSG00000135048|chr9:71734986-71734986|G/A|missense_variant	TMEM2|p.L405F|1|0.53|ENSG00000135048|chr9:71734986-71734986|G/A|missense_variant	TMEM2|p.L405F|1|0.53|ENSG00000135048|chr9:71734986-71734986|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	527.1902465820312	2	527.248015	1052.48148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.28	1	39.28	38.78	39.78	0								0	0	0	0.14905	1	13409	13409		23.148	3.7094	1				47817	29362	34701	34983	46750	46750					-0.04266529064648239
SEWIEGVSF	9	Unmodified	_SEWIEGVSF_					0	0	0		TMEM2|p.L405F|1|0.53|ENSG00000135048|chr9:71734986-71734986|G/A|missense_variant	TMEM2|p.L405F|1|0.53|ENSG00000135048|chr9:71734986-71734986|G/A|missense_variant	TMEM2|p.L405F|1|0.53|ENSG00000135048|chr9:71734986-71734986|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	527.2020263671875	2	527.248015	1052.48148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.377	1	39.152	38.652	39.652	0.77451								0	0	0	0.14905	1	14118	14118		23.148	3.7094	1				47818	29362	34701	34983	46751	46751					-0.04266529064648239
SEWIYQTDN	9	Unmodified	_SEWIYQTDN_					0	0	0			REV__ENST00000559111.1_1_15:99798356-99798647:+|nuORF	REV__ENST00000559111.1_1_15:99798356-99798647:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	579.2193603515625	2	578.251286	1154.48802	-0.099926	-5.7782E-05	-0.059279	-3.4278E-05	-0.1592	-9.206E-05	578.2511816563028	62.677	2.8092	62.677	61.686	64.495	0					147	54	4	0	0	0	0.69674	1	22457	22457		7.2892	7.2892	1	14495000	+		47819	26148	34702	34984	46752	46752					-0.08304635903937196
SEWKIKSI	8	Unmodified	_SEWKIKSI_					0	0	0			REV__JAKMIP2|p.E203K|1|0.38|ENSG00000176049|chr5:147660968-147660968|C/T|missense_variant	REV__JAKMIP2|p.E203K|1|0.38|ENSG00000176049|chr5:147660968-147660968|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	495.6719055175781	2	495.784567	989.554582	-0.96355	-0.00047771	-0.20751	-0.00010288	-1.1711	-0.00058059	495.78426489410805	33.64	0.4037	34.392	34.196	34.6	0.75225					10	7	2	0	0	0	0.93416	1	12128	12128		2.3027	0	1	997530	+		47820	21382	34703	34985	46753	46753					0.059386444485994616
SEWLEVEVR	9	Unmodified	_SEWLEVEVR_					0	0	0		tr|U7SZZ0|U7SZZ0_FUSNUDNAgyrasesubunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gyrBPE=3SV=1	tr|U7SZZ0|U7SZZ0_FUSNUDNAgyrasesubunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gyrBPE=3SV=1	tr|U7SZZ0|U7SZZ0_FUSNUDNAgyrasesubunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gyrBPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	383.1186828613281	3	382.864506	1145.57169	0.38803	0.00014856	2.0283	0.00077656	2.4163	0.00092512	383.2001356264299	35.991	0.25195	35.991	35.881	36.133	0					5	4	2	0	0	0	0.38603	1	12003	12003		18.373	2.6345	1	555480			47821	29872	34704	34986	46754	46754					0.0047252026377009315
SEWLFKVW	8	Unmodified	_SEWLFKVW_					0	0	0			REV__nc|ENSG00000107581|Q14152-2|EIF3A	REV__nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-SECPEP	A375_MHC_IP_R1	1	365.2731628417969	3	365.527165	1093.55967	0.035086	1.2825E-05	-1.2117	-0.0004429	-1.1766	-0.00043007	365.5266574390164	27.916	0.55441	27.916	27.533	28.088	0					14	10	2	0	0	0	0.972	1	8425	8425		9.3831	0	1	628370	+		47822	17489	34705	34987	46755	46755					0.016629483112410526
SEWLPFLIQ	9	Unmodified	_SEWLPFLIQ_					0	0	0			REV__ENST00000479435.1_1_13:108955131-108955239:+|nuORF	REV__ENST00000479435.1_1_13:108955131-108955239:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	566.6470947265625	2	566.8055	1131.59645	-0.70348	-0.00039873	-2.6077	-0.0014781	-3.3112	-0.0018768	566.8034777582043	30.453	0.40301	30.453	30.2	30.603	0					10	7	2	0	0	0	0.65246	1	9568	9568		15.847	5.6966	1	2075700	+		47823	25233	34706	34988	46756	46756					0.03591200137134365
SEWRKAVMD	9	Unmodified	_SEWRKAVMD_					0	0	0			REV__PTCHD1|p.E227K|1|0.4|ENSG00000165186|chrX:23379918-23379918|G/A|missense_variant	REV__PTCHD1|p.E227K|1|0.4|ENSG00000165186|chrX:23379918-23379918|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	561.1380004882812	2	561.274041	1120.53353	-0.4608	-0.00025864	-0.15201	-8.5317E-05	-0.61281	-0.00034395	561.2742046224407	37.701	0.40732	37.701	37.505	37.913	0					11	7	2	0	0	0	0.76187	1	12750	12750		3.9444	0	1	1518300	+		47824	27855	34707	34989	46757	46757					-0.021916889225394698
SEWTGASLAY	10	Unmodified	_SEWTGASLAY_					0	0	0		nc|ENSG00000163938|Q9BVP2-2|GNL3;ENSG00000163938|ENST00000418458|GNL3	nc|ENSG00000163938|Q9BVP2-2|GNL3	nc|ENSG00000163938|Q9BVP2-2|GNL3	MSMS	A375_MHC_IP_R2	2	542.5855102539062	2	542.750921	1083.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.626	1	85.362	84.862	85.862	0.73601								0	0	0	0.12703	1	32171	32171		36.127	14.38	1				47825	6749	34708	34990	46758	46758					-0.051114305530063575
SEWVKAGVQKY	11	Unmodified	_SEWVKAGVQKY_					0	0	0		ENSG00000132604|ENST00000254942|TERF2	ENSG00000132604|ENST00000254942|TERF2	ENSG00000132604|ENST00000254942|TERF2	MULTI-MSMS	A375_MHC_IP_R1	1	432.63104248046875	3	432.231189	1293.67174	-0.1874	-8.1001E-05	-0.066289	-2.8652E-05	-0.25369	-0.00010965	432.23118894424	34.645	0.30278	34.645	34.456	34.759	0					13	5	3	0	0	0	0.43152	1	11465	11465		23.964	18.561	1	3153800			47826	4426	34709	34991	46759	46759					0.03664757597584867
SEWVKAGVQKY	11	Unmodified	_SEWVKAGVQKY_					0	0	0		ENSG00000132604|ENST00000254942|TERF2	ENSG00000132604|ENST00000254942|TERF2	ENSG00000132604|ENST00000254942|TERF2	MULTI-SECPEP	A375_MHC_IP_R2	2	431.6063537597656	3	432.231189	1293.67174	-0.73396	-0.00031724	0.32449	0.00014025	-0.40948	-0.00017699	432.5657987650735	33.901	0.35415	34.653	34.399	34.753	0.75225					13	6	3	0	0	0	0.99332	1	12219	12219		7.0371	0.40671	1	1954300			47827	4426	34709	34991	46760	46760					0.03664757597584867
SEYAAQDQKF	10	Unmodified	_SEYAAQDQKF_					0	0	0		ENST00000489169.1_1_10:120445642-120450964:-|nuORF;ENST00000544392.5_1_10:120445642-120485819:-|nuORF;nc|ENSG00000151893|Q86Y37-4|CACUL1;ENSG00000151893|ENST00000369151|CACUL1	ENST00000489169.1_1_10:120445642-120450964:-|nuORF	ENST00000489169.1_1_10:120445642-120450964:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	594.1723022460938	2	593.772385	1185.53022	-1.4241	-0.00084558	0.23515	0.00013963	-1.1889	-0.00070595	593.7727182533001	29.126	0.40102	29.824	29.681	30.083	0.69872					9	7	2	0	0	0	0.022742	1	10147	10147		117.84	73.979	1	9044500			47828	5933	34710	34992	46761	46761					-0.05512660495583077
SEYAAQVEPV	10	Unmodified	_SEYAAQVEPV_					0	0	0			REV__COL11A2|p.G213E|1|0.22|ENSG00000204248|chr6:33186787-33186787|C/T|missense_variant	REV__COL11A2|p.G213E|1|0.22|ENSG00000204248|chr6:33186787-33186787|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	547.1873168945312	2	546.764029	1091.5135	-0.54411	-0.0002975	0.32005	0.00017499	-0.22406	-0.00012251	546.7642957408499	60.61	0.96638	60.61	59.905	60.871	0					25	18	2	0	0	0	0.57505	1	21762	21762		22.736	2.2827	1	2431200	+		47829	15821	34711	34993	46762	46762					-0.02859161381525155
SEYAAQVEPV	10	Unmodified	_SEYAAQVEPV_					0	0	0			REV__COL11A2|p.G213E|1|0.22|ENSG00000204248|chr6:33186787-33186787|C/T|missense_variant	REV__COL11A2|p.G213E|1|0.22|ENSG00000204248|chr6:33186787-33186787|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	546.63720703125	2	546.764029	1091.5135	-1.1335	-0.00061976	0.32496	0.00017768	-0.80855	-0.00044209	546.7642343672827	59.961	0.60909	60.708	60.45	61.059	0.74714					25	11	3	0	0	0	0.63639	1	22748	22748		18.146	1.0335	1	3177200	+		47830	15821	34711	34993	46763	46763					-0.02859161381525155
SEYARPHVM	9	Unmodified	_SEYARPHVM_					0	0	0		ENSG00000111676|ENST00000396684|ATN1;ENSG00000142599|ENST00000400908|RERE;nc|ENSG00000142599|Q9P2R6-2|RERE	ENSG00000111676|ENST00000396684|ATN1;ENSG00000142599|ENST00000400908|RERE	ENSG00000142599|ENST00000400908|RERE	MULTI-MSMS	A375_MHC_IP_R1	1	545.6605224609375	2	545.260933	1088.50731	-0.85395	-0.00046563	0.22455	0.00012244	-0.6294	-0.00034319	545.2612483385682	26.093	0.45551	26.093	25.866	26.322	0					13	8	2	0	0	0	0.094655	1	7767	7767		51.63	27.609	1	3304400			47831	5314;3015	34712	34994	46764	46764					-0.033399580940340456
SEYARPHVM	9	Unmodified	_SEYARPHVM_					0	0	0		ENSG00000111676|ENST00000396684|ATN1;ENSG00000142599|ENST00000400908|RERE;nc|ENSG00000142599|Q9P2R6-2|RERE	ENSG00000111676|ENST00000396684|ATN1;ENSG00000142599|ENST00000400908|RERE	ENSG00000142599|ENST00000400908|RERE	MULTI-MSMS	A375_MHC_IP_R2	2	545.1656494140625	2	545.260933	1088.50731	-1.2501	-0.00068163	-0.041801	-2.2793E-05	-1.2919	-0.00070442	545.26091151736	25.428	0.45717	26.072	25.924	26.382	0.64368					15	8	2	0	0	0	0.10622	3	8483	8483;8508;8588		49.554	49.554	1	3276200			47832	5314;3015	34712	34994	46765;46766;46767	46765					-0.033399580940340456
SEYARPHVM	9	Oxidation (M)	_SEYARPHVM(Oxidation (M))_		SEYARPHVM(1)		SEYARPHVM(58)	0	0	1		ENSG00000111676|ENST00000396684|ATN1;ENSG00000142599|ENST00000400908|RERE;nc|ENSG00000142599|Q9P2R6-2|RERE	ENSG00000111676|ENST00000396684|ATN1;ENSG00000142599|ENST00000400908|RERE	ENSG00000142599|ENST00000400908|RERE	MULTI-MSMS	A375_MHC_IP_R2	2	553.658203125	2	553.258391	1104.50223	-1.1096	-0.00061387	0.3818	0.00021123	-0.72776	-0.00040264	553.2586105863991	20.866	0.45566	21.477	21.312	21.768	0.61029					15	8	2	0	0	0	0.066859	1	6539	6539		57.722	30.093	1	1618400			47833	5314;3015	34712	34995	46768	46768		143			-0.04584261956665614
SEYDEEPYRF	10	Unmodified	_SEYDEEPYRF_					0	0	0			REV__nc|ENSG00000137145|Q5VZ89|DENND4C	REV__nc|ENSG00000137145|Q5VZ89|DENND4C	MULTI-SECPEP	A375_MHC_IP_R1	1	446.2569580078125	3	445.522697	1333.54626	-0.071375	-3.1799E-05	-0.05237	-2.3332E-05	-0.12374	-5.5131E-05	445.5226583081986	43.805	0.45804	43.805	43.603	44.061	0					21	8	4	0	0	0	0.94587	1	15272	15272		0.13989	0	1	3785900	+		47834	18989	34713	34996	46769	46769					-0.10716999049350306
SEYDQIRYI	9	Unmodified	_SEYDQIRYI_					0	0	0		nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2;ENSG00000064393|ENST00000406875|HIPK2	nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	MULTI-SECPEP	A375_MHC_IP_R1	1	594.190185546875	2	593.790578	1185.5666	-0.64381	-0.00038229	0.29932	0.00017774	-0.34449	-0.00020455	593.7906208155155	67.039	0.40932	67.039	66.785	67.194	0					17	7	3	0	0	0	0.037765	1	24270	24270		125.04	79.338	1	4083600			47835	6651	34714	34997	46770	46770					-0.018757835988708393
SEYDQIRYI	9	Unmodified	_SEYDQIRYI_					0	0	0		nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2;ENSG00000064393|ENST00000406875|HIPK2	nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	MULTI-SECPEP	A375_MHC_IP_R2	2	594.1907958984375	2	593.790578	1185.5666	-0.70366	-0.00041783	1.6374	0.0009723	0.93378	0.00055447	593.79053867591	66.395	0.86711	67.131	66.831	67.698	0.73631					22	16	2	0	0	0	0.040539	1	25135	25135		110.67	66.902	1	5083200			47836	6651	34714	34997	46771	46771					-0.018757835988708393
SEYDREVL	8	Unmodified	_SEYDREVL_					0	0	0			REV__nc|ENSG00000136492|Q9BX63-2|BRIP1	REV__nc|ENSG00000136492|Q9BX63-2|BRIP1	MULTI-MSMS	A375_MHC_IP_R1	1	505.68115234375	2	505.743096	1009.47164	-0.27978	-0.0001415	0.21991	0.00011122	-0.059873	-3.028E-05	505.74301498808035	54.523	0.55758	54.523	54.213	54.771	0					16	10	2	0	0	0	0.7758	1	19405	19405		10.183	0.83596	1	3592700	+		47837	18941	34715	34998	46772	46772					-0.03271717070037994
SEYEKFNGTLP	11	Unmodified	_SEYEKFNGTLP_					0	0	0			REV__ENST00000377861.4_3_13:67782396-67782498:-|nuORF	REV__ENST00000377861.4_3_13:67782396-67782498:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	642.7212524414062	2	642.808968	1283.60338	-0.8241	-0.00052974	2.6007	0.0016717	1.7766	0.001142	642.8095801671669	55.259	0.66317	56.009	55.523	56.187	0.75075					30	12	4	0	0	0	0.69231	1	20845	20845		16.149	4.6544	1	5239300	+		47838	24166	34716	34999	46773	46773					-0.02707531772944094
SEYEKIAFQY	10	Unmodified	_SEYEKIAFQY_					0	0	0		nc|ENSG00000196091|Q00872-5|MYBPC1;nc|ENSG00000196091|Q00872-3|MYBPC1;nc|ENSG00000196091|Q00872-9|MYBPC1;nc|ENSG00000196091|Q00872-8|MYBPC1;nc|ENSG00000196091|Q00872-7|MYBPC1;nc|ENSG00000196091|Q00872|MYBPC1;nc|ENSG00000196091|Q00872-10|MYBPC1;nc|ENSG00000196091|Q00872-2|MYBPC1;ENSG00000196091|ENST00000361466|MYBPC1;nc|ENSG00000196091|Q00872-6|MYBPC1;ENSG00000086967|ENST00000357701|MYBPC2	nc|ENSG00000196091|Q00872-5|MYBPC1;ENSG00000086967|ENST00000357701|MYBPC2	nc|ENSG00000196091|Q00872-5|MYBPC1	MULTI-SECPEP	A375_MHC_IP_R2	2	426.9472351074219	3	426.539799	1276.59757	-0.49377	-0.00021061	0.29711	0.00012673	-0.19667	-8.3886E-05	426.87429964282074	19.992	0.3525	20.603	20.349	20.701	0.61029					9	6	2	0	0	0	0.92227	1	6126	6126		5.0475	0	1	458480			47839	8992;1848	34717	35000	46774	46774					-0.02966630284618077
SEYEKSLQF	9	Unmodified	_SEYEKSLQF_					0	0	0		nc|ENSG00000129197|Q86UA6-3|RPAIN;nc|ENSG00000129197|Q86UA6-4|RPAIN;nc|ENSG00000129197|Q86UA6-9|RPAIN;nc|ENSG00000129197|Q86UA6-2|RPAIN;ENST00000571043.5_1_17:5323428-5329403:+|nuORF;ENSG00000129197|ENST00000381209|RPAIN;nc|ENSG00000129197|Q86UA6-8|RPAIN	nc|ENSG00000129197|Q86UA6-3|RPAIN	nc|ENSG00000129197|Q86UA6-3|RPAIN	MULTI-MSMS	A375_MHC_IP_R1	1	566.1719360351562	2	565.771854	1129.52915	-0.5494	-0.00031083	-0.58303	-0.00032986	-1.1324	-0.0006407	565.7720247836264	52.839	0.81106	52.839	52.592	53.403	0					40	15	3	0	0	0	0.014789	1	18793	18793		90.135	54.091	1	5587400			47840	4180	34718	35001	46775	46775					-0.03042874864490841
SEYEKSLQF	9	Unmodified	_SEYEKSLQF_					0	0	0		nc|ENSG00000129197|Q86UA6-3|RPAIN;nc|ENSG00000129197|Q86UA6-4|RPAIN;nc|ENSG00000129197|Q86UA6-9|RPAIN;nc|ENSG00000129197|Q86UA6-2|RPAIN;ENST00000571043.5_1_17:5323428-5329403:+|nuORF;ENSG00000129197|ENST00000381209|RPAIN;nc|ENSG00000129197|Q86UA6-8|RPAIN	nc|ENSG00000129197|Q86UA6-3|RPAIN	nc|ENSG00000129197|Q86UA6-3|RPAIN	MULTI-MSMS	A375_MHC_IP_R2	2	566.1715698242188	2	565.771854	1129.52915	-0.81152	-0.00045914	-0.23482	-0.00013285	-1.0463	-0.00059199	565.7719394347619	52.173	1.1659	52.925	52.473	53.639	0.75225					28	22	2	0	0	0	0.0096822	1	19655	19655		110.55	54.376	1	6510600			47841	4180	34718	35001	46776	46776					-0.03042874864490841
SEYFKSRSSP	10	Unmodified	_SEYFKSRSSP_					0	0	0		ENSG00000157259|ENST00000287957|GATAD1	ENSG00000157259|ENST00000287957|GATAD1	ENSG00000157259|ENST00000287957|GATAD1	MULTI-SECPEP	A375_MHC_IP_R1	1	396.2483825683594	3	396.527894	1186.56185	-0.36065	-0.00014301	0.37978	0.0001506	0.019134	7.5871E-06	396.5280513759587	23.762	0.45743	23.762	23.533	23.991	0					15	8	2	0	0	0	0.75488	1	6694	6694		12.228	0	1	12986000			47842	6235	34719	35002	46777	46777					-0.023966677416183302
SEYFKSRSSP	10	Unmodified	_SEYFKSRSSP_					0	0	0		ENSG00000157259|ENST00000287957|GATAD1	ENSG00000157259|ENST00000287957|GATAD1	ENSG00000157259|ENST00000287957|GATAD1	MULTI-SECPEP	A375_MHC_IP_R2	2	396.2489318847656	3	396.527894	1186.56185	-0.39366	-0.0001561	0.48434	0.00019205	0.09068	3.5957E-05	396.528061757036	23.653	0.45567	24.283	24.029	24.485	0.63014					13	8	2	0	0	0	0.87043	1	7552	7552		13.519	6.4816	1	3753600			47843	6235	34719	35002	46778	46778					-0.023966677416183302
SEYFRDMGY	9	Unmodified	_SEYFRDMGY_					0	0	0		ENSG00000114573|ENST00000273398|ATP6V1A;nc|ENSG00000114573|P38606-2|ATP6V1A	ENSG00000114573|ENST00000273398|ATP6V1A	ENSG00000114573|ENST00000273398|ATP6V1A	MULTI-SECPEP	A375_MHC_IP_R1	1	583.7215576171875	2	584.242406	1166.47026	-0.2435	-0.00014227	0.37524	0.00021923	0.13174	7.6969E-05	584.2430178686456	61.61	0.45759	61.61	61.382	61.839	0					13	8	2	0	0	0	0.63622	1	22176	22176		24.991	9.1438	1	1090400			47844	3230	34720	35003	46779	46779					-0.10631674430442217
SEYFYQEEF	9	Unmodified	_SEYFYQEEF_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-SECPEP	A375_MHC_IP_R2	2	621.6528930664062	2	621.253494	1240.49243	-0.79409	-0.00049333	0.34378	0.00021357	-0.45031	-0.00027976	621.2534315846626	97.927	0.76163	98.685	98.231	98.993	0.75748					20	14	2	0	0	0	0.010978	1	37151	37151		142.08	79.507	1	2445300			47845	6149	34721	35004	46780	46780					-0.11819171481033663
SEYGGSGDGY	10	Unmodified	_SEYGGSGDGY_					0	0	0		ENST00000474219.1_1_3:80265926-80266142:+|nuORF	ENST00000474219.1_1_3:80265926-80266142:+|nuORF	ENST00000474219.1_1_3:80265926-80266142:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	496.6636657714844	2	496.185611	990.35667	-0.37247	-0.00018481	-0.72022	-0.00035736	-1.0927	-0.00054217	496.18513430024257	59.506	0.60889	59.506	59.194	59.803	0					19	11	2	0	0	0	0.71245	1	21482	21482		6.7232	0.96273	1	1706700			47846	12400	34722	35005	46781	46781					-0.13889446271844008
SEYGSIIAF	9	Unmodified	_SEYGSIIAF_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	MULTI-SECPEP	A375_MHC_IP_R2	2	986.8831176757812	1	986.482939	985.475663	0.20865	0.00020583	0.30067	0.0002966	0.50932	0.00050243	986.4832470279041	113.95	0.70119	114.66	114.38	115.08	0.70985					22	13	2	0	0	0	0.01139	1	43006	43006		104.8	44.41	1	16998000			47847	4069	34723	35006	46782	46782					-0.017656275763442864
SEYHTLLY	8	Unmodified	_SEYHTLLY_					0	0	0		nc|ENSG00000108840|Q9UQL6-3|HDAC5;ENSG00000108840|ENST00000682912|HDAC5	nc|ENSG00000108840|Q9UQL6-3|HDAC5	nc|ENSG00000108840|Q9UQL6-3|HDAC5	MULTI-SECPEP	A375_MHC_IP_R2	2	512.6769409179688	2	513.250557	1024.48656	-1.1476	-0.00058903	0.14142	7.2584E-05	-1.0062	-0.00051644	513.2506728077823	59.497	0.40329	60.244	60.047	60.45	0.74714					11	7	2	0	0	0	0.54285	1	22528	22528		46.921	46.921	1	1517400			47848	2843	34724	35007	46783	46783					-0.024702252020233573
SEYLGVTSF	9	Unmodified	_SEYLGVTSF_					0	0	0		nc|ENSG00000130024|Q8WUB8-3|PHF10;nc|ENSG00000130024|Q8WUB8-2|PHF10;ENSG00000130024|ENST00000339209|PHF10;ENST00000464779.1_1_6:170117898-170118989:-|nuORF	nc|ENSG00000130024|Q8WUB8-3|PHF10	nc|ENSG00000130024|Q8WUB8-3|PHF10	MULTI-MSMS	A375_MHC_IP_R1	1	501.6524353027344	2	501.742565	1001.47058	-0.33922	-0.0001702	0.18471	9.2675E-05	-0.15451	-7.7526E-05	501.7425626970726	98.39	0.7626	98.39	97.999	98.762	0					29	14	3	0	0	0	0.0093345	1	36135	36135		104.8	56.453	1	5479900			47849	4219	34725	35008	46784	46784					-0.030099314389531173
SEYLGVTSF	9	Unmodified	_SEYLGVTSF_					0	0	0		nc|ENSG00000130024|Q8WUB8-3|PHF10;nc|ENSG00000130024|Q8WUB8-2|PHF10;ENSG00000130024|ENST00000339209|PHF10;ENST00000464779.1_1_6:170117898-170118989:-|nuORF	nc|ENSG00000130024|Q8WUB8-3|PHF10	nc|ENSG00000130024|Q8WUB8-3|PHF10	MULTI-MSMS	A375_MHC_IP_R2	2	501.6523132324219	2	501.742565	1001.47058	-0.72404	-0.00036328	0.18421	9.2428E-05	-0.53982	-0.00027085	501.7425750455151	97.655	0.71249	98.411	98.077	98.79	0.75586					33	13	4	0	0	0	0.01574	1	37030	37030		88.904	45.045	1	6274400			47850	4219	34725	35008	46785	46785					-0.030099314389531173
SEYLNVLQPQ	10	Unmodified	_SEYLNVLQPQ_					0	0	0		ENSG00000106460|ENST00000396668|TMEM106B	ENSG00000106460|ENST00000396668|TMEM106B	ENSG00000106460|ENST00000396668|TMEM106B	MULTI-MSMS	A375_MHC_IP_R1	1	397.5805358886719	3	397.539911	1189.5979	-0.40784	-0.00016213	0.1715	6.8177E-05	-0.23634	-9.3955E-05	397.87325133861356	23.736	0.40657	23.736	23.584	23.991	0					10	7	2	0	0	0	0.70651	1	6543	6543		5.4027	1.2861	1	766690			47851	2692	34726	35009	46786	46786					0.010687894352258809
SEYNKNGNSF	10	Unmodified	_SEYNKNGNSF_					0	0	0		ENSG00000075407|ENST00000685332|ZNF37A	ENSG00000075407|ENST00000685332|ZNF37A	ENSG00000075407|ENST00000685332|ZNF37A	MULTI-MSMS	A375_MHC_IP_R1	1	580.6538696289062	2	580.25436	1158.49417	-0.21381	-0.00012406	-0.99498	-0.00057734	-1.2088	-0.00070141	580.2536165285796	50.605	0.71115	50.605	50.254	50.966	0					19	13	2	0	0	0	0.63639	3	17974	17876;17889;17974		18.146	2.9685	1	2087400			47852	1608	34727	35010	46787;46788;46789	46789					-0.07874117672440661
SEYNKNGNSF	10	Unmodified	_SEYNKNGNSF_					0	0	0		ENSG00000075407|ENST00000685332|ZNF37A	ENSG00000075407|ENST00000685332|ZNF37A	ENSG00000075407|ENST00000685332|ZNF37A	MULTI-MSMS	A375_MHC_IP_R2	2	580.6907348632812	2	580.25436	1158.49417	-0.53794	-0.00031214	-0.34595	-0.00020074	-0.88389	-0.00051288	580.2538460880421	49.922	0.66092	50.676	50.294	50.955	0.75406					19	12	2	0	0	0	0.63639	1	18707	18707		18.146	3.3081	1	2453200			47853	1608	34727	35010	46790	46790					-0.07874117672440661
SEYPMRRSGL	10	Unmodified	_SEYPMRRSGL_					0	0	0			REV__ENSG00000132464|ENST00000396073|ENAM	REV__ENSG00000132464|ENST00000396073|ENAM	MULTI-SECPEP	A375_MHC_IP_R1	1	399.2776184082031	3	399.201124	1194.58154	0.06146	2.4535E-05	4.2469	0.0016954	4.3084	0.0017199	399.20317268352505	21.595	0.30338	21.595	21.454	21.757	0					6	5	2	0	0	0	0.92772	1	5713	5713		2.4348	0	1	688760	+		47854	18654	34728	35011	46791	46791					-0.00796615002514045
SEYQAQIY	8	Unmodified	_SEYQAQIY_					0	0	0			REV__ENST00000564798.2_2_16:56374475-56377859:+|nuORF	REV__ENST00000564798.2_2_16:56374475-56377859:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.2112731933594	2	501.232364	1000.45018	-0.70979	-0.00035577	-0.16023	-8.0314E-05	-0.87002	-0.00043608	501.23213055101945	41.596	1.2696	41.596	40.762	42.032	0					51	24	4	0	0	0	0.77603	1	14184	14184		9.3474	0	1	30780000	+		47855	26220	34729	35012	46792	46792					-0.05003102098760337
SEYRQSLHTY	10	Unmodified	_SEYRQSLHTY_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-SECPEP	A375_MHC_IP_R1	1	428.9386901855469	3	428.538681	1282.59421	-0.36923	-0.00015823	0.27184	0.00011649	-0.097388	-4.1734E-05	428.53880274964985	24.072	0.30482	24.072	23.889	24.194	0					10	5	3	0	0	0	0.62001	1	6747	6747		29.281	15.063	1	7210100			47856	2285	34730	35013	46793	46793					-0.03577880338616524
SEYRQSLHTY	10	Unmodified	_SEYRQSLHTY_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-SECPEP	A375_MHC_IP_R2	2	428.93853759765625	3	428.538681	1282.59421	-0.51039	-0.00021872	0.65281	0.00027975	0.14242	6.1031E-05	428.53885077154627	23.35	0.40345	23.98	23.726	24.129	0.63014					13	6	3	0	0	0	0.75488	1	7512	7512		16.275	4.047	1	6664500			47857	2285	34730	35013	46794	46794					-0.03577880338616524
SEYRWHINF	9	Unmodified	_SEYRWHINF_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-SECPEP	A375_MHC_IP_R1	1	418.2684631347656	3	417.868362	1250.58326	0.27083	0.00011317	-0.055275	-2.3098E-05	0.21556	9.0075E-05	417.86834159584316	70.893	0.51102	70.893	70.648	71.159	0					21	9	3	0	0	0	0.23313	1	25765	25765		57.249	32.258	1	3206600			47858	2067	34731	35014	46795	46795					-0.03201237922235123
SEYRWHINF	9	Unmodified	_SEYRWHINF_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	A375_MHC_IP_R2	2	418.2684020996094	3	417.868362	1250.58326	0.007974	3.3321E-06	-0.28684	-0.00011986	-0.27887	-0.00011653	417.86825905445926	70.16	0.45672	70.894	70.642	71.099	0.73421					19	8	3	0	0	0	0.066859	1	26599	26599		53.317	30.659	1	3609400			47859	2067	34731	35014	46796	46796					-0.03201237922235123
SEYSKFLSY	9	Unmodified	_SEYSKFLSY_					0	0	0		ENSG00000163389|ENST00000295588|POGLUT1;ENST00000473648.1_1_3:119209263-119211282:+|nuORF;ENST00000486607.5_1_3:119198882-119211282:+|nuORF	ENSG00000163389|ENST00000295588|POGLUT1	ENSG00000163389|ENST00000295588|POGLUT1	MULTI-MSMS	A375_MHC_IP_R1	1	562.6686401367188	2	562.268947	1122.52334	-0.25237	-0.0001419	0.29983	0.00016858	0.047454	2.6682E-05	562.2690880292167	70.225	0.7654	70.225	69.933	70.698	0					28	14	3	0	0	0	0.04699	1	25550	25550		65.474	34.837	1	4822600			47860	6657	34732	35015	46797	46797					-0.033019733761420866
SEYSKFLSY	9	Unmodified	_SEYSKFLSY_					0	0	0		ENSG00000163389|ENST00000295588|POGLUT1;ENST00000473648.1_1_3:119209263-119211282:+|nuORF;ENST00000486607.5_1_3:119198882-119211282:+|nuORF	ENSG00000163389|ENST00000295588|POGLUT1	ENSG00000163389|ENST00000295588|POGLUT1	MULTI-SECPEP	A375_MHC_IP_R2	2	562.6685180664062	2	562.268947	1122.52334	-0.48534	-0.00027289	-0.24683	-0.00013878	-0.73217	-0.00041168	562.2688108871337	69.575	0.61156	70.309	70.081	70.693	0.73421					25	11	3	0	0	0	0.038931	1	26388	26388		100.09	56.232	1	5540600			47861	6657	34732	35015	46798	46798					-0.033019733761420866
SEYTDHLTIY	10	Unmodified	_SEYTDHLTIY_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-SECPEP	A375_MHC_IP_R2	2	621.6881103515625	2	621.287868	1240.56118	-0.68555	-0.00042593	-1.0803	-0.00067117	-1.7658	-0.0010971	621.2878395902942	63.002	0.4055	63.745	63.584	63.989	0.74263					15	7	3	0	0	0	0.8125	1	23925	23925		24.021	9.6152	1	3328600	+		47862	27313	34733	35016	46799	46799					-0.049475071813049
SEYVDREPL	9	Unmodified	_SEYVDREPL_					0	0	0			REV__ENSG00000072682|ENST00000360568|P4HA2	REV__ENSG00000072682|ENST00000360568|P4HA2	MULTI-MSMS	A375_MHC_IP_R1	1	554.6689453125	2	554.269478	1106.5244	-0.67569	-0.00037452	-1.235	-0.00068453	-1.9107	-0.001059	554.2691195971792	19.561	0.3056	19.561	19.368	19.674	0					14	5	3	0	0	0	0.41409	1	4898	4898		24.021	3.5669	1	5516900	+		47863	16608	34734	35017	46800	46800					-0.024597590072289677
SEYVDREPL	9	Unmodified	_SEYVDREPL_					0	0	0			REV__ENSG00000072682|ENST00000360568|P4HA2	REV__ENSG00000072682|ENST00000360568|P4HA2	MULTI-SECPEP	A375_MHC_IP_R1	1	370.2487487792969	3	369.848744	1106.5244	0.1806	6.6795E-05	0.21476	7.9427E-05	0.39536	0.00014622	369.8488022397552	19.546	0.45819	19.546	19.368	19.827	0					16	8	3	0	0	0	0.74412	1	4893	4893		6.6304	0	1	7636000	+		47864	16608	34734	35017	46801	46801					-0.024597590072289677
SEYYNEKLFI	10	Unmodified	_SEYYNEKLFI_					0	0	0			REV__ENST00000529983.2_1_12:89917068-89917107:-|nuORF	REV__ENST00000529983.2_1_12:89917068-89917107:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	436.2835693359375	3	435.883566	1304.62887	0.35483	0.00015466	-0.3479	-0.00015164	0.0069294	3.0204E-06	435.8834343756377	69.554	0.75988	69.554	69.173	69.933	0					29	14	3	0	0	0	0.70312	1	25226	25226		10.899	1.6552	1	7228600	+		47865	25834	34735	35018	46802	46802					-0.01126057250530721
SFAAAGFG	8	Unmodified	_SFAAAGFG_					0	0	0		ENSG00000196411|ENST00000358173|EPHB4;ENST00000487222.5_1_7:100401085-100421908:-|nuORF;EPHB4|p.E925K|1|0.18|ENSG00000196411|chr7:100805227-100805227|C/T|missense_variant	ENSG00000196411|ENST00000358173|EPHB4	ENSG00000196411|ENST00000358173|EPHB4	MULTI-SECPEP	A375_MHC_IP_R2	2	364.9296569824219	2	364.174121	726.33369	-0.07832	-2.8522E-05	-0.22672	-8.2567E-05	-0.30504	-0.00011109	364.17389125399706	39.939	0.15163	40.714	40.626	40.777	0.77451					4	2	2	0	0	0	0.972	1	14739	14739		5.2307	0	1	499440			47866	9037	34736	35019	46803	46803					-0.040423758080009975
SFACDDVNDDC	11	Unmodified	_SFACDDVNDDC_					0	0	0			REV__DLL1|p.S449F|1|0.5|ENSG00000198719|chr6:170283933-170283933|G/A|missense_variant	REV__DLL1|p.S449F|1|0.5|ENSG00000198719|chr6:170283933-170283933|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	602.1224975585938	2	602.200078	1202.3856	-0.78081	-0.00047021	-1.0934	-0.00065843	-1.8742	-0.0011286	602.1992372863716	61.804	0.504	62.547	62.27	62.774	0.74263					13	9	2	0	0	0	0.7342	2	23469	23445;23469		4.897	1.6157	1	1803600	+		47867	15998	34737	35020	46804;46805	46805					-0.2074941302937532
SFAFWLFSQ	9	Unmodified	_SFAFWLFSQ_					0	0	0		ENST00000552994.5_1_12:72038755-72038851:-|nuORF	ENST00000552994.5_1_12:72038755-72038851:-|nuORF	ENST00000552994.5_1_12:72038755-72038851:-|nuORF	MSMS	A375_MHC_IP_R2	2	566.7291259765625	2	566.776742	1131.53893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.495	1	73.23	72.73	73.73	0.73541								0	0	0	0.1499	1	27512	27512		21.747	2.4897	1				47868	13396	34738	35021	46806	46806					-0.021576420684368713
SFAHQFARIK	10	Unmodified	_SFAHQFARIK_					0	0	0			REV__FBXO45|p.E248Gfs*17|1|0.12|ENSG00000174013|chr3:196584200-196584233|AGTTCCTGGGGGTTGCTTTTAGAGGACTTCCAAA/-|frameshift_variant	REV__FBXO45|p.E248Gfs*17|1|0.12|ENSG00000174013|chr3:196584200-196584233|AGTTCCTGGGGGTTGCTTTTAGAGGACTTCCAAA/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	603.231689453125	2	602.832914	1203.65128	-0.54037	-0.00032575	-1.8416	-0.0011102	-2.3819	-0.0014359	602.8318108876373	65.154	0.35442	65.892	65.664	66.018	0.73811					10	6	2	0	0	0	0.67901	1	24739	24739		17.113	6.289	1	1466900	+		47869	21260	34739	35022	46807	46807					0.057596317284151155
SFAIGDCLCCC	11	Unmodified	_SFAIGDCLCCC_					0	0	0			REV__ENST00000538918.5_1_12:133707252-133707324:+|nuORF	REV__ENST00000538918.5_1_12:133707252-133707324:+|nuORF	MSMS	A375_MHC_IP_R1	1	567.678955078125	2	567.707973	1133.40139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.9	1	71.9	71.4	72.4	0								0	0	0	0.16108	1	26142	26142		13.042	4.2971	1		+		47870	25938	34740	35023	46808	46808					-0.1599712131767319
SFAKTNLS	8	Unmodified	_SFAKTNLS_					0	0	0		SYCP1|p.P49S|1|0.1|ENSG00000198765|chr1:114856609-114856609|C/T|missense_variant	SYCP1|p.P49S|1|0.1|ENSG00000198765|chr1:114856609-114856609|C/T|missense_variant	SYCP1|p.P49S|1|0.1|ENSG00000198765|chr1:114856609-114856609|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	434.1694030761719	2	434.232168	866.449782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.73	1	142.76	142.26	143.26	0.030731								0	0	0	0.16876	1	55798	55798		8.5933	0	1				47871	29277	34741	35024	46809	46809					0.011215229720392017
SFAKTPSSKCV	11	Unmodified	_SFAKTPSSKCV_					0	0	0		ENST00000523568.1_7:102228019-102246337:-|nuORF;nc|ENSG00000105808|O43374-2|RASA4;ENST00000446874.5_1_7:44073712-44078582:-|nuORF	ENST00000523568.1_7:102228019-102246337:-|nuORF	ENST00000523568.1_7:102228019-102246337:-|nuORF	MSMS	A375_MHC_IP_R1	1	577.6939086914062	2	577.797349	1153.58014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.918	1	34.918	34.418	35.418	0								0	0	0	0.16112	1	11562	11562		12.873	0.63195	1				47872	13044	34742	35025	46810	46810					0.00949750908716851
SFAKTPSSKCV	11	Unmodified	_SFAKTPSSKCV_					0	0	0		ENST00000523568.1_7:102228019-102246337:-|nuORF;nc|ENSG00000105808|O43374-2|RASA4;ENST00000446874.5_1_7:44073712-44078582:-|nuORF	ENST00000523568.1_7:102228019-102246337:-|nuORF	ENST00000523568.1_7:102228019-102246337:-|nuORF	MSMS	A375_MHC_IP_R1	1	577.7164306640625	2	577.797349	1153.58014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.462	1	35.462	34.962	35.962	0								0	0	0	0.15759	1	11795	11795		15.739	1.3332	1				47873	13044	34742	35025	46811	46811					0.00949750908716851
SFALPKRNLV	10	Unmodified	_SFALPKRNLV_					0	0	0		ENST00000374279.3_1_9:114697220-114697295:+|nuORF	ENST00000374279.3_1_9:114697220-114697295:+|nuORF	ENST00000374279.3_1_9:114697220-114697295:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	382.2489013671875	3	382.232752	1143.67643	0.20003	7.6458E-05	-0.10728	-4.1006E-05	0.092749	3.5452E-05	382.2326304856164	25.588	0.45681	25.588	25.46	25.917	0					23	8	3	0	0	0	0.71455	1	7459	7459		5.7834	0	1	12101000			47874	11250	34743	35026	46812	46812					0.1103368653095913
SFALPKRNLV	10	Unmodified	_SFALPKRNLV_					0	0	0		ENST00000374279.3_1_9:114697220-114697295:+|nuORF	ENST00000374279.3_1_9:114697220-114697295:+|nuORF	ENST00000374279.3_1_9:114697220-114697295:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	382.2486267089844	3	382.232752	1143.67643	-0.48438	-0.00018515	-0.23824	-9.1063E-05	-0.72262	-0.00027621	382.232547183835	24.796	0.71291	25.439	25.263	25.976	0.64368					20	13	2	0	0	0	0.71619	1	8311	8311		5.0475	0	1	8844600			47875	11250	34743	35026	46813	46813					0.1103368653095913
SFALQVLQDL	10	Unmodified	_SFALQVLQDL_					0	0	0		ENST00000497613.2_1_8:145667249-145667900:-|nuORF	ENST00000497613.2_1_8:145667249-145667900:-|nuORF	ENST00000497613.2_1_8:145667249-145667900:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	567.677001953125	2	567.313689	1132.61282	-0.36117	-0.0002049	2.1134	0.001199	1.7523	0.00099408	567.8166862776877	74.491	0.45731	74.491	74.146	74.604	0					11	8	2	0	0	0	0.90853	1	27037	27037		10.824	3.215	1	646860			47876	12748	34744	35027	46814	46814					0.05182281303223135
SFALTGDSAH	10	Unmodified	_SFALTGDSAH_					0	0	0		ENSG00000156395|ENST00000369701|SORCS3	ENSG00000156395|ENST00000369701|SORCS3	ENSG00000156395|ENST00000369701|SORCS3	MULTI-MSMS	A375_MHC_IP_R2	2	503.6707763671875	2	503.235439	1004.45632	-0.69174	-0.00034811	0.38117	0.00019182	-0.31057	-0.00015629	503.23554051295355	64.968	0.40579	65.706	65.562	65.968	0.73811					12	7	2	0	0	0	0.70793	1	24707	24707		8.7454	0.15213	1	656210			47877	6190	34745	35028	46815	46815					-0.045725838672410646
SFALTGDSAH	10	Unmodified	_SFALTGDSAH_					0	0	0		ENSG00000156395|ENST00000369701|SORCS3	ENSG00000156395|ENST00000369701|SORCS3	ENSG00000156395|ENST00000369701|SORCS3	MULTI-MATCH	A375_MHC_IP_R1	1		2	503.235439	1004.45632	-0.51464	-0.00025898	0.45275	0.00022784	-0.061883	-3.1142E-05	503.2356461320098	65.691	0.30445	65.691	65.616	65.921	0	-0.0075042	2.8709E-05	NaN	8.7454	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	870670			47878	6190	34745	35028							-0.045725838672410646
SFANGCENCKY	11	Unmodified	_SFANGCENCKY_					0	0	0			REV__ENST00000416749.1_3_6:27326520-27327366:-|nuORF	REV__ENST00000416749.1_3_6:27326520-27327366:-|nuORF	MSMS	A375_MHC_IP_R2	2	618.1765747070312	2	618.244623	1234.47469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.873	1	96.623	96.123	97.123	0.75045								0	0	0	0.16249	1	36411	36411		5.7319	0.43497	1		+		47879	24538	34746	35029	46816	46816					-0.13316533279180476
SFANVFTWY	9	Unmodified	_SFANVFTWY_					0	0	0			REV__ENSG00000081923|ENST00000648908|ATP8B1	REV__ENSG00000081923|ENST00000648908|ATP8B1	MSMS	A375_MHC_IP_R1	1	567.677001953125	2	567.766374	1133.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.231	1	74.231	73.731	74.731	0								0	0	0	0.1521	1	27037	27037		18.135	0	1		+		47880	16782	34747	35030	46817	46817					-0.0432223244808938
SFAPHVDRS	9	Unmodified	_SFAPHVDRS_					0	0	0			REV__nc|ENSG00000160284|Q9H0A9-2|SPATC1L	REV__nc|ENSG00000160284|Q9H0A9-2|SPATC1L	MSMS	A375_MHC_IP_R2	2	508.1473693847656	2	508.251423	1014.48829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.25	1	69.985	69.485	70.485	0.7346								0	0	0	0.15283	1	26243	26243		16.942	1.0951	1		+		47881	20157	34748	35031	46818	46818					-0.018371713934357103
SFARHPTNGF	10	Unmodified	_SFARHPTNGF_					0	0	0		ENSG00000145725|ENST00000358359|PPIP5K2	ENSG00000145725|ENST00000358359|PPIP5K2	ENSG00000145725|ENST00000358359|PPIP5K2	MULTI-SECPEP	A375_MHC_IP_R1	1	566.7296142578125	2	567.277972	1132.54139	-0.36776	-0.00020862	2.1287	0.0012075	1.7609	0.00099892	567.2792962360737	73.617	0.65765	73.617	73.235	73.893	0					19	12	2	0	0	0	0.74754	1	26746	26746		22.736	10.496	1	894270			47882	5574	34749	35032	46819	46819					-0.01957793610790759
SFAWPGSSK	9	Unmodified	_SFAWPGSSK_					0	0	0			REV__ENST00000409686.2_1_9:102067468-102068890:+|nuORF	REV__ENST00000409686.2_1_9:102067468-102068890:+|nuORF	MSMS	A375_MHC_IP_R1	1	483.6559753417969	2	483.737617	965.460681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.008	1	31.008	30.508	31.508	0								0	0	0	0.15003	1	9908	9908		21.537	2.28	1		+	+	47883	15900	34750	35033	46820	46820					-0.023430746536632796
SFAYTKQHW	9	Unmodified	_SFAYTKQHW_					0	0	0			REV__nc|ENSG00000099956|Q12824-2|SMARCB1	REV__nc|ENSG00000099956|Q12824-2|SMARCB1	MSMS	A375_MHC_IP_R1	1	584.3927612304688	2	584.282723	1166.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.869	1	99.869	99.369	100.37	0								0	0	0	0.15486	1	36696	36696		8.5933	0	1		+		47884	17037	34751	35034	46821	46821					-0.0257202532525298
SFCVPRPTELF	11	Unmodified	_SFCVPRPTELF_					0	0	0			REV__ENST00000461597.1_1_1:156260048-156262795:-|nuORF	REV__ENST00000461597.1_1_1:156260048-156262795:-|nuORF	MSMS	A375_MHC_IP_R1	1	432.634765625	3	432.553274	1294.63799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.353	1	30.353	29.853	30.853	0								0	0	0	0.16232	1	9636	9636		6.6235	1.5759	1		+		47885	24978	34752	35035	46822	46822					0.0024601283414540376
SFCWKRKREWW	11	Unmodified	_SFCWKRKREWW_					0	0	0		ENSG00000230358|ENST00000424157|SPDYE21;nc|ENSG00000205482|P0DV79|SPDYE18;ENSG00000185040|ENST00000633306|SPDYE16	ENSG00000230358|ENST00000424157|SPDYE21	ENSG00000230358|ENST00000424157|SPDYE21	MSMS	A375_MHC_IP_R1	1	806.40283203125	2	806.403712	1610.79287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.7	1	122.7	122.2	123.2	0								0	0	0	0.16312	1	45713	45713		2.4985	1.169	1				47886	9716	34753	35036	46823	46823					0.01190681759248946
SFDGSYVNY	9	Unmodified	_SFDGSYVNY_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	A375_MHC_IP_R2	2	526.677978515625	2	526.221997	1050.42944	-0.291	-0.00015313	-0.88532	-0.00046587	-1.1763	-0.000619	526.2216107761183	85.935	1.1213	86.668	86.236	87.357	0.733					48	21	3	0	0	0	0.69674	1	32825	32825		7.2892	0.93513	1	10130000			47887	8339	34754	35037	46824	46824					-0.09375692478420206
SFDIPPPP	8	Unmodified	_SFDIPPPP_					0	0	0		nc|ENSG00000164708|P15259|PGAM2	nc|ENSG00000164708|P15259|PGAM2	nc|ENSG00000164708|P15259|PGAM2	MSMS	A375_MHC_IP_R1	1	435.2820739746094	2	435.223811	868.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.972	1	92.972	92.472	93.472	0								0	0	0	0.16876	1	34172	34172		5.2307	0	1				47888	14733	34755	35038	46825	46825					-0.006409779139062266
SFDKGPFATF	10	Unmodified	_SFDKGPFATF_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-SECPEP	A375_MHC_IP_R1	1	559.0718383789062	2	558.771657	1115.52876	-0.47972	-0.00026805	-0.49943	-0.00027907	-0.97915	-0.00054712	558.7707988984936	88.213	1.0693	88.213	87.34	88.409	0					25	20	2	0	0	0	0.61782	1	32319	32319		34.932	7.3033	1	1965400			47889	6778	34756	35039	46826	46826					-0.024382497936812797
SFDKKEAEE	9	Unmodified	_SFDKKEAEE_					0	0	0		tr|U7SUB5|U7SUB5_FUSNUGlycerol-3-phosphatedehydrogenase[NAD(P)+]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=gpsAPE=3SV=1	tr|U7SUB5|U7SUB5_FUSNUGlycerol-3-phosphatedehydrogenase[NAD(P)+]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=gpsAPE=3SV=1	tr|U7SUB5|U7SUB5_FUSNUGlycerol-3-phosphatedehydrogenase[NAD(P)+]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=gpsAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	543.1926879882812	2	541.753661	1081.49277	-0.9483	-0.00051375	0.024911	1.3496E-05	-0.92339	-0.00050025	541.7536369282114	30.074	2.4841	30.074	29.798	32.282	0					101	48	5	0	0	0	0.58047	1	9415	9415		15.847	4.2069	1	663170000			47890	29753	34757	35040	46827	46827					-0.044717517611843505
SFDLANEKRAK	11	Unmodified	_SFDLANEKRAK_					0	0	0		NLRP2|p.G559D|1|0.37|ENSG00000022556|chr19:54983374-54983374|G/A|missense_variant	NLRP2|p.G559D|1|0.37|ENSG00000022556|chr19:54983374-54983374|G/A|missense_variant	NLRP2|p.G559D|1|0.37|ENSG00000022556|chr19:54983374-54983374|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	427.2978210449219	3	426.89821	1277.6728	-0.57247	-0.00024439	-0.11896	-5.0783E-05	-0.69142	-0.00029517	426.89818107246543	56.609	0.56134	57.359	57.051	57.612	0.75014					17	10	2	0	0	0	0.99246	1	21420	21420		7.4771	2.4295	1	1944000			47891	15004	34758	35041	46828	46828					0.04506971966452511
SFDLGRQF	8	Unmodified	_SFDLGRQF_					0	0	0		nc|ENSG00000214160|Q92685-2|ALG3;ENSG00000214160|ENST00000397676|ALG3	nc|ENSG00000214160|Q92685-2|ALG3	nc|ENSG00000214160|Q92685-2|ALG3	MULTI-SECPEP	A375_MHC_IP_R1	1	485.6429138183594	2	485.243067	968.47158	-0.052995	-2.5715E-05	-0.13323	-6.4648E-05	-0.18622	-9.0363E-05	485.24296301897624	70.211	0.40854	70.211	69.983	70.392	0					14	7	2	0	0	0	0.81376	1	25495	25495		39.957	11.47	1	2647700			47892	9607	34759	35042	46829	46829					-0.013916722793851477
SFDLGRQF	8	Unmodified	_SFDLGRQF_					0	0	0		nc|ENSG00000214160|Q92685-2|ALG3;ENSG00000214160|ENST00000397676|ALG3	nc|ENSG00000214160|Q92685-2|ALG3	nc|ENSG00000214160|Q92685-2|ALG3	MULTI-SECPEP	A375_MHC_IP_R2	2	485.6426086425781	2	485.243067	968.47158	-0.5075	-0.00024626	-0.32323	-0.00015684	-0.83072	-0.0004031	485.242812590734	69.437	0.55767	70.172	69.931	70.488	0.73421					17	10	2	0	0	0	0.81376	1	26335	26335		32.305	0.18852	1	2173500			47893	9607	34759	35042	46830	46830					-0.013916722793851477
SFDQDSEGCE	10	Unmodified	_SFDQDSEGCE_					0	0	0		nc|ENSG00000016402|Q9UHF4-2|IL20RA;nc|ENSG00000016402|Q9UHF4-3|IL20RA;ENSG00000016402|ENST00000316649|IL20RA	nc|ENSG00000016402|Q9UHF4-2|IL20RA	nc|ENSG00000016402|Q9UHF4-2|IL20RA	MSMS	A375_MHC_IP_R1	1	558.6895751953125	2	558.692943	1115.37133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.641	1	23.641	23.141	24.141	0								0	0	0	0.15308	1	6533	6533		10.824	2.9138	1				47894	1038	34760	35043	46831	46831					-0.18173742186013442
SFDTAGQEW	9	Unmodified	_SFDTAGQEW_					0	0	0		ENST00000409033.7_1_2:220088902-220089082:-|nuORF	ENST00000409033.7_1_2:220088902-220089082:-|nuORF	ENST00000409033.7_1_2:220088902-220089082:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	521.7000732421875	2	520.719621	1039.42469	-0.71278	-0.00037116	0.86146	0.00044858	0.14868	7.7421E-05	520.7203013366664	86.408	0.35483	86.408	86.224	86.578	0					11	6	3	0	0	0	0.53367	1	31680	31680		18.146	6.5061	1	2259800			47895	11619	34761	35044	46832	46832					-0.09344576621174383
SFDTAGQEW	9	Unmodified	_SFDTAGQEW_					0	0	0		ENST00000409033.7_1_2:220088902-220089082:-|nuORF	ENST00000409033.7_1_2:220088902-220089082:-|nuORF	ENST00000409033.7_1_2:220088902-220089082:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	520.719621	1039.42469	-0.46048	-0.00023978	0.75452	0.0003929	0.29404	0.00015311	520.7199302495272	85.816	0.40658	86.552	86.391	86.797	0.73601	0.072179	-5.4591E-05	NaN	18.146	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1412900			47896	11619	34761	35044							-0.09344576621174383
SFDVNDQDPD	10	Unmodified	_SFDVNDQDPD_					0	0	0		ENSG00000140564|ENST00000268171|FURIN	ENSG00000140564|ENST00000268171|FURIN	ENSG00000140564|ENST00000268171|FURIN	MSMS	A375_MHC_IP_R1	1	576.1791381835938	2	576.228007	1150.44146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.288	1	44.288	43.788	44.788	0								0	0	0	0.15207	1	15445	15445		13.906	1.3745	1				47897	5171	34762	35045	46833	46833					-0.12774120525909893
SFDYDHDAF	9	Unmodified	_SFDYDHDAF_					0	0	0		nc|ENSG00000128595|O43852-6|CALU;nc|ENSG00000128595|O43852-2|CALU;ENSG00000128595|ENST00000249364|CALU;nc|ENSG00000128595|O43852-4|CALU;nc|ENSG00000128595|O43852-3|CALU;nc|ENSG00000128595|O43852-9|CALU;nc|ENSG00000128595|O43852-8|CALU;nc|ENSG00000128595|O43852-10|CALU;nc|ENSG00000128595|O43852-5|CALU;nc|ENSG00000128595|O43852-12|CALU;nc|ENSG00000128595|O43852-13|CALU;nc|ENSG00000128595|O43852-14|CALU;nc|ENSG00000128595|O43852-7|CALU;nc|ENSG00000128595|O43852-11|CALU	nc|ENSG00000128595|O43852-6|CALU	nc|ENSG00000128595|O43852-6|CALU	MSMS	A375_MHC_IP_R2	2	558.67138671875	2	558.717079	1115.4196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.455	1	74.19	73.69	74.69	0.73541								0	0	0	0.15486	1	27880	27880		8.5933	0	1				47898	4151	34763	35046	46834	46834					-0.13348880483817993
SFDYQVERVV	10	Unmodified	_SFDYQVERVV_					0	0	0			REV__nc|ENSG00000165006|Q9NZ09-2|UBAP1	REV__nc|ENSG00000165006|Q9NZ09-2|UBAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	415.1217346191406	3	414.543544	1240.6088	-0.043227	-1.7919E-05	0.04645	1.9256E-05	0.003223	1.3361E-06	414.54361282247686	45.492	0.40591	46.257	45.947	46.353	0.76519					10	7	2	0	0	0	0.93406	1	16981	16981		1.7423	0	1	872490	+		47899	20539	34764	35047	46835	46835					-0.0018780819050334685
SFEEQLTEW	9	Unmodified	_SFEEQLTEW_					0	0	0			REV__nc|ENSG00000198836|O60313-13|OPA1	REV__nc|ENSG00000198836|O60313-13|OPA1	MSMS	A375_MHC_IP_R1	1	584.6589965820312	2	584.761486	1167.50842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.732	1	99.732	99.232	100.23	0								0	0	0	0.15486	1	36642	36642		8.5933	3.8373	1		+		47900	22426	34765	35048	46836	46836					-0.06863465244146028
SFEGNNNY	8	Unmodified	_SFEGNNNY_					0	0	0		ENSG00000099250|ENST00000374867|NRP1;nc|ENSG00000099250|O14786-3|NRP1;nc|ENSG00000099250|O14786-2|NRP1	ENSG00000099250|ENST00000374867|NRP1	ENSG00000099250|ENST00000374867|NRP1	MULTI-MSMS	A375_MHC_IP_R2	2	473.0904846191406	2	472.690864	943.367175	-0.51459	-0.00024324	-0.37676	-0.00017809	-0.89135	-0.00042133	472.6906421368694	67.716	0.61114	68.452	68.155	68.766	0.73631					17	11	2	0	0	0	0.77603	1	25682	25682		9.3474	2.6243	1	1708800			47901	2070	34766	35049	46837	46837					-0.10677418826753637
SFEGNNNY	8	Unmodified	_SFEGNNNY_					0	0	0		ENSG00000099250|ENST00000374867|NRP1;nc|ENSG00000099250|O14786-3|NRP1;nc|ENSG00000099250|O14786-2|NRP1	ENSG00000099250|ENST00000374867|NRP1	ENSG00000099250|ENST00000374867|NRP1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	472.690864	943.367175	-0.51459	-0.00024324	-0.37676	-0.00017809	-0.89135	-0.00042133	472.6906421368694	67.716	0.61114	68.452	68.155	68.766	0.73631	-0.043892	-0.00015949	NaN	9.3474	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1708800			47902	2070	34766	35049							-0.10677418826753637
SFEITREKY	9	Unmodified	_SFEITREKY_					0	0	0			REV__tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1	REV__tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	586.188720703125	2	586.800946	1171.58734	-0.93468	-0.00054847	0.59671	0.00035015	-0.33797	-0.00019832	587.3025888265231	24.796	0.45589	25.439	25.06	25.516	0.64368					18	8	3	0	0	0	0.59614	1	8080	8080		24.021	4.7636	1	6490200	+		47903	28630	34767	35050	46838	46838					0.008408067808204578
SFERRLKL	8	Unmodified	_SFERRLKL_					0	0	0			REV__ENST00000491099.1_1_2:149511519-149519500:+|nuORF	REV__ENST00000491099.1_1_2:149511519-149519500:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	524.6255493164062	2	524.816733	1047.61891	-0.5829	-0.00030592	-0.32406	-0.00017007	-0.90696	-0.00047599	524.8164788203615	55.547	0.40532	56.297	56.135	56.54	0.75075					10	7	2	0	0	0	0.94479	1	21026	21026		13.508	4.9146	1	1274000	+		47904	18908	34768	35051	46839	46839					0.09700844325402613
SFESPFAYF	9	Unmodified	_SFESPFAYF_					0	0	0			REV__TECTA|p.S728F|1|0.52|ENSG00000109927|chr11:121128160-121128160|C/T|missense_variant	REV__TECTA|p.S728F|1|0.52|ENSG00000109927|chr11:121128160-121128160|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	547.6705932617188	2	547.745108	1093.47566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.966	1	64.966	64.466	65.466	0								0	0	0	0.14905	1	23515	23515		23.148	7.3012	1		+		47905	28090	34769	35052	46840	46840					-0.0673362757634095
SFESPVMKN	9	Unmodified	_SFESPVMKN_					0	0	0			REV__ENST00000283410.4_1_18:33059207-33077880:-|nuORF	REV__ENST00000283410.4_1_18:33059207-33077880:-|nuORF	MSMS	A375_MHC_IP_R2	2	519.6663208007812	2	519.749867	1037.48518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.616	1	28.295	27.795	28.795	0.67857								0	0	0	0.14677	1	9460	9460		26.884	1.4843	1		+		47906	23329	34770	35053	46841	46841					-0.03206182562439608
SFESWSGSL	9	Unmodified	_SFESWSGSL_					0	0	0			REV__ENSG00000141499|ENST00000396463|WRAP53	REV__ENSG00000141499|ENST00000396463|WRAP53	MULTI-MSMS	A375_MHC_IP_R2	2	500.1684265136719	2	500.224539	998.434526	-0.85295	-0.00042667	0.22177	0.00011093	-0.63118	-0.00031573	500.22462003852894	57.841	1.0142	58.59	58.069	59.083	0.74894					24	19	2	0	0	0	0.6898	1	22040	22040		7.9102	7.9102	1	1678000	+		47907	19272	34771	35054	46842	46842					-0.0647538861578596
SFEVAVDR	8	Unmodified	_SFEVAVDR_					0	0	0			REV__ENST00000566541.5_3_16:31886566-31901532:+|nuORF	REV__ENST00000566541.5_3_16:31886566-31901532:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	462.6527099609375	2	461.735074	921.455596	-0.52582	-0.00024279	0.21052	9.7204E-05	-0.31531	-0.00014559	461.73516627089	36.567	0.6079	36.567	36.287	36.895	0					32	11	5	0	0	0	0.75389	1	12307	12307		19.257	0	1	20689000	+		47908	21934	34772	35055	46843	46843					-0.008273785162828062
SFFDRSSAF	9	Unmodified	_SFFDRSSAF_					0	0	0			REV__nc|ENSG00000185917|Q9NVD3-4|SETD4	REV__nc|ENSG00000185917|Q9NVD3-4|SETD4	MULTI-SECPEP	A375_MHC_IP_R2	2	531.6898803710938	2	532.245806	1062.47706	-0.72743	-0.00038717	-0.67402	-0.00035875	-1.4015	-0.00074592	532.2436918506334	30.741	0.70733	31.46	31.216	31.923	0.71857					36	13	4	0	0	0	0.65246	1	10977	10977		15.847	5.7733	1	6310000	+		47909	21931	34773	35056	46844	46844					-0.05167993487566491
SFFEEYFY	8	Unmodified	_SFFEEYFY_					0	0	0			REV__tr|U7SU99|U7SU99_FUSNUMFStransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01074PE=4SV=1	REV__tr|U7SU99|U7SU99_FUSNUMFStransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01074PE=4SV=1	MSMS	A375_MHC_IP_R1	1	566.1609497070312	2	566.237116	1130.45968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.934	1	62.934	62.434	63.434	0								0	0	0	0.16876	1	22738	22738		10.183	0.10947	1		+		47910	28542	34774	35057	46845	46845					-0.10033333813225909
SFFRSKSYL	9	Unmodified	_SFFRSKSYL_					0	0	0		nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1	nc|ENSG00000100105|Q9HBE1-3|PATZ1	nc|ENSG00000100105|Q9HBE1-3|PATZ1	MULTI-SECPEP	A375_MHC_IP_R1	1	567.2454833984375	2	567.800749	1133.58694	-0.35443	-0.00020125	0.084601	4.8036E-05	-0.26983	-0.00015321	567.8012389285266	74.171	0.15173	74.171	74.045	74.197	0					4	2	2	0	0	0	0.71541	1	26978	26978		11.64	6.8843	1	347860			47911	2119	34775	35058	46846	46846					0.025494318515939085
SFFVRGQEF	9	Unmodified	_SFFVRGQEF_					0	0	0		ENSG00000144228|ENST00000280098|SPOPL;ENST00000420679.1_1_2:139308594-139326647:+|nuORF	ENSG00000144228|ENST00000280098|SPOPL	ENSG00000144228|ENST00000280098|SPOPL	MULTI-MSMS	A375_MHC_IP_R1	1	559.1018676757812	2	558.777274	1115.53999	-0.5103	-0.00028515	-0.87449	-0.00048864	-1.3848	-0.00077379	558.7759208860336	74.453	1.3701	74.453	73.69	75.06	0					66	26	4	0	0	0	0.0098082	1	27143	27143		114.19	28.545	1	11132000			47912	5472	34776	35059	46847	46847					-0.013154276995237524
SFFVRGQEF	9	Unmodified	_SFFVRGQEF_					0	0	0		ENSG00000144228|ENST00000280098|SPOPL;ENST00000420679.1_1_2:139308594-139326647:+|nuORF	ENSG00000144228|ENST00000280098|SPOPL	ENSG00000144228|ENST00000280098|SPOPL	MULTI-MSMS	A375_MHC_IP_R2	2	559.1759643554688	2	558.777274	1115.53999	-0.66604	-0.00037217	-1.1303	-0.00063157	-1.7963	-0.0010037	558.776093957686	73.622	1.4255	74.357	73.684	75.109	0.7354					63	27	3	0	0	0	0.0095341	1	27912	27912		96.936	30.479	1	15099000			47913	5472	34776	35059	46848	46848					-0.013154276995237524
SFGDFQTV	8	Unmodified	_SFGDFQTV_					0	0	0		ENST00000577083.1_1_16:4491378-4492529:+|nuORF;nc|ENSG00000103423|Q96EY1-2|DNAJA3;ENSG00000103423|ENST00000262375|DNAJA3;nc|ENSG00000103423|Q96EY1-3|DNAJA3	ENST00000577083.1_1_16:4491378-4492529:+|nuORF	ENST00000577083.1_1_16:4491378-4492529:+|nuORF	MSMS	A375_MHC_IP_R1	1	450.6344299316406	2	450.708525	899.402498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.469	1	56.469	55.969	56.969	0								0	0	0	0.16876	1	20231	20231		14.582	0	1				47914	2450	34777	35060	46849	46849					-0.05122756298942477
SFGEDDDC	8	Unmodified	_SFGEDDDC_					0	0	0		ENST00000572148.1_1_17:4863453-4863890:-|nuORF;ENSG00000091640|ENST00000206020|SPAG7	ENST00000572148.1_1_17:4863453-4863890:-|nuORF	ENST00000572148.1_1_17:4863453-4863890:-|nuORF	MSMS	A375_MHC_IP_R2	2	444.14251708984375	2	444.139815	886.265077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.658	1	48.419	47.919	48.919	0.76128								0	0	0	0.16876	1	17875	17875		2.5775	0	1				47915	1984	34778	35061	46850	46850					-0.18260452960680595
SFGESPSDAP	10	Unmodified	_SFGESPSDAP_					0	0	0			REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18	REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18	MULTI-MSMS	A375_MHC_IP_R1	1	497.6114807128906	2	497.211629	992.408705	-0.41595	-0.00020681	0.029511	1.4673E-05	-0.38644	-0.00019214	497.2115177084697	31.895	0.71678	31.895	31.616	32.333	0					31	13	3	0	0	0	0.23156	1	10260	10260		46.021	8.047	1	15080000	+		47916	17346	34779	35062	46851	46851					-0.08780282858094779
SFGESPSDAP	10	Unmodified	_SFGESPSDAP_					0	0	0			REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18	REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18	MULTI-MSMS	A375_MHC_IP_R2	2	497.611328125	2	497.211629	992.408705	-0.51998	-0.00025854	-0.10715	-5.3278E-05	-0.62713	-0.00031182	497.21150244030525	31.341	0.66487	32.06	31.872	32.536	0.71857					35	12	4	0	0	0	0.36703	1	11072	11072		36.127	9.8589	1	13110000	+		47917	17346	34779	35062	46852	46852					-0.08780282858094779
SFGESPSDAP	10	Unmodified	_SFGESPSDAP_					0	0	0			REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18	REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	497.211629	992.408705	-0.41595	-0.00020681	0.029511	1.4673E-05	-0.38644	-0.00019214	497.2115177084697	31.895	0.71678	31.895	31.616	32.333	0	-0.082344	6.6072E-05	NaN	46.021	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15080000	+		47918	17346	34779	35062							-0.08780282858094779
SFGESPSDAP	10	Unmodified	_SFGESPSDAP_					0	0	0			REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18	REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	497.211629	992.408705	-0.51998	-0.00025854	-0.10715	-5.3278E-05	-0.62713	-0.00031182	497.21150244030525	31.341	0.66487	32.06	31.872	32.536	0.71857	0.082344	-6.983E-05	NaN	46.021	35	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13110000	+		47919	17346	34779	35062							-0.08780282858094779
SFGIYINLK	9	Unmodified	_SFGIYINLK_					0	0	0			REV__USP48|p.T313I|1|0.14|ENSG00000090686|chr1:21747120-21747120|G/A|missense_variant	REV__USP48|p.T313I|1|0.14|ENSG00000090686|chr1:21747120-21747120|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	352.2416076660156	3	352.20257	1053.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.37	1	26.014	25.514	26.514	0.64368								0	0	0	0.15135	1	8468	8468		19.362	2.3134	1		+		47920	28970	34780	35063	46853	46853					0.061232174826727714
SFGKTDQYQLG	11	Unmodified	_SFGKTDQYQLG_					0	0	0			REV__ENSG00000147065|ENST00000360270|MSN	REV__ENSG00000147065|ENST00000360270|MSN	MULTI-SECPEP	A375_MHC_IP_R1	1	622.1847534179688	2	622.30131	1242.58807	-0.48436	-0.00030142	-0.27353	-0.00017022	-0.75789	-0.00047163	622.3011255205977	50.308	0.30644	50.308	50.153	50.459	0					9	5	2	0	0	0	0.90673	1	17844	17844		23.79	8.9515	1	1375000	+		47921	19564	34781	35064	46854	46854					-0.02352398570155856
SFGNEQCF	8	Unmodified	_SFGNEQCF_					0	0	0			REV__nc|ENSG00000157869|P51157-3|RAB28	REV__nc|ENSG00000157869|P51157-3|RAB28	MSMS	A375_MHC_IP_R1	1	466.14508056640625	2	466.18436	930.354167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.882	1	73.882	73.382	74.382	0								0	0	0	0.16876	1	26909	26909		9.3474	2.9933	1		+		47922	20050	34782	35065	46855	46855					-0.11379573210501803
SFGPFGLSFF	10	Unmodified	_SFGPFGLSFF_					0	0	0			REV__nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	REV__nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	MULTI-MSMS	A375_MHC_IP_R1	1	553.6692504882812	2	553.271293	1104.52803	-0.43959	-0.00024321	-1.8159	-0.0010047	-2.2555	-0.0012479	553.2692177234878	72.603	1.0652	72.603	72.22	73.285	0					103	20	6	0	0	0	0.36703	1	26573	26573		36.127	1.7253	1	52738000	+		47923	22097	34783	35066	46856	46856					-0.020050444426942704
SFGSDGCFTSP	11	Unmodified	_SFGSDGCFTSP_					0	0	0			REV__ENSG00000197380|ENST00000391916|DACT3	REV__ENSG00000197380|ENST00000391916|DACT3	MULTI-SECPEP	A375_MHC_IP_R1	1	552.61669921875	2	552.718764	1103.42298	-0.60305	-0.00033332	-0.15741	-8.7003E-05	-0.76046	-0.00042032	552.7187585446028	83.669	0.45721	83.669	83.329	83.786	0					15	8	2	0	0	0	0.95991	1	30561	30561		13.042	0.80181	1	3141300	+		47924	22282	34784	35067	46857	46857					-0.12459953701431914
SFGSLRNIY	9	Unmodified	_SFGSLRNIY_					0	0	0		ENSG00000135439|ENST00000547588|AGAP2;nc|ENSG00000135439|Q99490|AGAP2	ENSG00000135439|ENST00000547588|AGAP2	ENSG00000135439|ENST00000547588|AGAP2	MULTI-MSMS	A375_MHC_IP_R1	1	528.6390991210938	2	528.777274	1055.53999	-0.65589	-0.00034682	0.34727	0.00018363	-0.30862	-0.00016319	528.7772662767335	52.644	0.50971	52.644	52.387	52.897	0					23	9	3	0	0	0	0.61998	1	18635	18635		13.906	0	1	4889700			47925	4682	34785	35068	46858	46858					0.01444572300465552
SFGVGAFP	8	Unmodified	_SFGVGAFP_					0	0	0		ENSG00000204308|ENST00000375094|RNF5	ENSG00000204308|ENST00000375094|RNF5	ENSG00000204308|ENST00000375094|RNF5	MSMS	A375_MHC_IP_R2	2	391.12396240234375	2	391.197596	780.38064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.471	1	45.24	44.74	45.74	0.7691								0	0	0	0.16876	1	16598	16598		9.3474	3.587	1				47926	9426	34786	35069	46859	46859					-0.01833516256851908
SFGVYLLG	8	Unmodified	_SFGVYLLG_					0	0	0			REV__nc|ENSG00000196376|Q5T1Q4-2|SLC35F1	REV__nc|ENSG00000196376|Q5T1Q4-2|SLC35F1	MSMS	A375_MHC_IP_R2	2	428.1763000488281	2	428.234179	854.453805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.15	1	106.91	106.41	107.41	0.75977								0	0	0	0.16876	1	40129	40129		5.7604	0	1		+		47927	22189	34787	35070	46860	46860					0.02075612465773702
SFGYTLVWATA	11	Unmodified	_SFGYTLVWATA_					0	0	0		ENST00000456286.5_2_6:31619556-31619733:-|nuORF	ENST00000456286.5_2_6:31619556-31619733:-|nuORF	ENST00000456286.5_2_6:31619556-31619733:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	406.2729797363281	3	405.873001	1214.59717	-0.31335	-0.00012718	4.0978	0.0016632	3.7845	0.001536	405.87313374291983	63.812	0.56046	63.812	63.58	64.141	0					29	10	4	0	0	0	0.98748	1	23152	23152		7.0371	1.1689	1	2533700			47928	12128	34788	35071	46861	46861					-0.0015400521381252474
SFHAPSTPE	9	Unmodified	_SFHAPSTPE_					0	0	0			REV__ENST00000587213.5_1_19:56159538-56160159:+|nuORF	REV__ENST00000587213.5_1_19:56159538-56160159:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	487.14263916015625	2	486.724707	971.43486	-0.76748	-0.00037355	0.40936	0.00019924	-0.35812	-0.00017431	486.7248866920743	36.294	0.25424	37.065	36.953	37.207	0.7709					6	4	2	0	0	0	0.20567	1	13212	13212		37.974	16.227	1	1361100	+		47929	26395	34789	35072	46862	46862					-0.05199968895942675
SFHEECLA	8	Unmodified	_SFHEECLA_					0	0	0			REV__nc|ENSG00000100697|Q9UPY3-2|DICER1	REV__nc|ENSG00000100697|Q9UPY3-2|DICER1	MSMS	A375_MHC_IP_R2	2	468.17108154296875	2	468.20001	934.385467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.074	1	67.81	67.31	68.31	0.73631								0	0	0	0.16876	1	25410	25410		10.183	0.83596	1		+		47930	17115	34790	35073	46863	46863					-0.08435000176416452
SFHPGLNPL	9	Unmodified	_SFHPGLNPL_					0	0	0		ENSG00000142599|ENST00000400908|RERE;nc|ENSG00000142599|Q9P2R6-2|RERE	ENSG00000142599|ENST00000400908|RERE	ENSG00000142599|ENST00000400908|RERE	MULTI-SECPEP	A375_MHC_IP_R2	2	491.66070556640625	2	491.261259	980.507966	-0.65964	-0.00032406	0.84341	0.00041433	0.18377	9.0277E-05	491.26146070081404	66.41	1.0186	67.146	66.882	67.9	0.73631					24	19	2	0	0	0	0.47368	1	25202	25202		34.102	11.65	1	1381100			47931	5314	34791	35074	46864	46864					0.01693204617322408
SFHPGLNPL	9	Unmodified	_SFHPGLNPL_					0	0	0		ENSG00000142599|ENST00000400908|RERE;nc|ENSG00000142599|Q9P2R6-2|RERE	ENSG00000142599|ENST00000400908|RERE	ENSG00000142599|ENST00000400908|RERE	MULTI-MATCH	A375_MHC_IP_R1	1		2	491.261259	980.507966	-0.6588	-0.00032364	1.3405	0.00065855	0.68173	0.00033491	491.2615070686523	67.453	0.86371	67.453	67.091	67.955	0	0.15323	0.00027551	NaN	34.102	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	939980			47932	5314	34791	35074							0.01693204617322408
SFHTQERSI	9	Unmodified	_SFHTQERSI_					0	0	0			REV__nc|ENSG00000163645|Q7L0X2-3|ERICH6	REV__nc|ENSG00000163645|Q7L0X2-3|ERICH6	MULTI-SECPEP	A375_MHC_IP_R1	1	553.1749877929688	2	552.775262	1103.53597	-0.13068	-7.2238E-05	0.04144	2.2907E-05	-0.089241	-4.933E-05	552.7751327411889	48.632	0.50628	48.632	48.375	48.882	0					16	9	2	0	0	0	0.65246	1	17170	17170		10.824	0	1	2739200	+		47933	20394	34792	35075	46865	46865					-0.01165517193226151
SFILTLQNNN	10	Unmodified	_SFILTLQNNN_					0	0	0			REV__LRFN5|p.S139F|1|0.18|ENSG00000165379|chr14:41887041-41887041|C/T|missense_variant	REV__LRFN5|p.S139F|1|0.18|ENSG00000165379|chr14:41887041-41887041|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	581.7006225585938	2	582.306395	1162.59824	-0.61047	-0.00035548	-3.5021	-0.0020393	-4.1126	-0.0023948	582.3041948482377	38.293	0.20301	38.293	38.168	38.371	0					5	3	2	0	0	0	0.92227	1	12998	12998		8.7454	2.0222	1	1154100	+		47934	26941	34793	35076	46866	46866					0.023442091550805344
SFILWAHHY	9	Unmodified	_SFILWAHHY_					0	0	0			REV__ENST00000395789.5_1_6:31802780-31805136:+|nuORF	REV__ENST00000395789.5_1_6:31802780-31805136:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	587.6690673828125	2	587.295633	1172.57671	-0.54309	-0.00031895	-0.9384	-0.00055112	-1.4815	-0.00087007	587.797143387634	70.584	0.65894	71.319	70.895	71.553	0.73421					15	12	2	0	0	0	0.75466	1	26616	26616		12.532	8.2023	1	6396100	+		47935	24328	34794	35077	46867	46867					-0.0026713108297826693
SFINPPGLN	9	Unmodified	_SFINPPGLN_					0	0	0		DCDC1|p.S542F|1|0.15|ENSG00000170959|chr11:31106923-31106923|G/A|missense_variant	DCDC1|p.S542F|1|0.15|ENSG00000170959|chr11:31106923-31106923|G/A|missense_variant	DCDC1|p.S542F|1|0.15|ENSG00000170959|chr11:31106923-31106923|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	479.6713562011719	2	479.753267	957.491981	-0.37537	-0.00018008	0.59143	0.00028374	0.21606	0.00010365	479.75354505328454	43.723	0.95972	44.492	43.873	44.833	0.7691					37	18	3	0	0	0	0.27715	1	16144	16144		32.305	2.0807	1	3181000			47936	715	34795	35078	46868	46868					0.011534983804153853
SFINSVAL	8	Unmodified	_SFINSVAL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;TTN|p.L14011*|1|0.26|ENSG00000155657|chr2:178618595-178618595|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R2	2	850.3641357421875	1	850.466895	849.459619	-0.45308	-0.00038533	0.33696	0.00028657	-0.11612	-9.8758E-05	850.4675901562582	113.44	0.35944	114.15	113.92	114.28	0.70985					10	6	2	0	0	0	0.53027	1	42748	42748		47.749	5.9091	1	2553200			47937	6151;14694	34796	35079	46869	46869					0.028867109774296296
SFINSVAL	8	Unmodified	_SFINSVAL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;TTN|p.L14011*|1|0.26|ENSG00000155657|chr2:178618595-178618595|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	A375_MHC_IP_R1	1		1	850.466895	849.459619	0.1689	0.00014364	-0.62739	-0.00053357	-0.45849	-0.00038993	850.4664093809935	114.44	0.35426	114.44	114.16	114.52	0	0.14252	-0.00054776	NaN	47.749	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2933400			47938	6151;14694	34796	35079							0.028867109774296296
SFIRLLLLL	9	Unmodified	_SFIRLLLLL_					0	0	0			REV__ENST00000332674.9_2_10:112045956-112046085:+|nuORF	REV__ENST00000332674.9_2_10:112045956-112046085:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1088.4862060546875	1	1087.72378	1086.7165	0.4953	0.00053875	0.45991	0.00050026	0.95522	0.001039	1087.7243355167557	115.5	0.25621	115.5	115.32	115.58	0					6	4	2	0	0	0	0.81254	1	42326	42326		0.52476	0	1	4510100	+		47939	23638	34797	35080	46870	46870					0.17661233201579307
SFISGELKWG	10	Unmodified	_SFISGELKWG_					0	0	0			REV__ENST00000593642.5_1_19:59070689-59081934:+|nuORF	REV__ENST00000593642.5_1_19:59070689-59081934:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	562.6926879882812	2	562.292756	1122.57096	-0.62364	-0.00035067	0.45043	0.00025328	-0.17321	-9.7394E-05	562.2928260508937	127.93	0.25341	128.2	128.07	128.32	0.26592					10	4	3	0	0	0	0.59108	1	50228	50228		21.537	1.1224	1	7919800	+		47940	26460	34798	35081	46871	46871					0.014577256147049411
SFISGELKWG	10	Unmodified	_SFISGELKWG_					0	0	0			REV__ENST00000593642.5_1_19:59070689-59081934:+|nuORF	REV__ENST00000593642.5_1_19:59070689-59081934:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	562.292756	1122.57096	-0.29421	-0.00016543	-0.32175	-0.00018092	-0.61596	-0.00034635	562.2921220724542	128.25	0.20358	128.25	128.07	128.28	0	0.024591	-0.00076994	NaN	21.537	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10377000	+		47941	26460	34798	35081							0.014577256147049411
SFISGELKWG	10	Unmodified	_SFISGELKWG_					0	0	0			REV__ENST00000593642.5_1_19:59070689-59081934:+|nuORF	REV__ENST00000593642.5_1_19:59070689-59081934:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	562.292756	1122.57096	-0.62364	-0.00035067	0.45043	0.00025328	-0.17321	-9.7394E-05	562.2928260508937	127.93	0.25341	128.2	128.07	128.32	0.26592	-0.024591	9.8441E-05	NaN	21.537	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7919800	+		47942	26460	34798	35081							0.014577256147049411
SFITDKLVEL	10	Unmodified	_SFITDKLVEL_					0	0	0			REV__PRR11|p.P104S|1|0.22|ENSG00000068489|chr17:59185470-59185470|C/T|missense_variant	REV__PRR11|p.P104S|1|0.22|ENSG00000068489|chr17:59185470-59185470|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	582.3554077148438	2	582.829172	1163.64379	-0.43362	-0.00025273	1.0362	0.00060393	0.60258	0.0003512	582.829842194911	84.739	0.86928	84.739	84.442	85.311	0					39	16	4	0	0	0	0.60556	1	31153	31153		20.454	5.6154	1	9746300	+		47943	27842	34799	35082	46872	46872					0.06851434617465202
SFKEQVPMPL	10	Unmodified	_SFKEQVPMPL_					0	0	0		nc|ENSG00000156345|Q8IZL9-3|CDK20;nc|ENSG00000156345|Q8IZL9-5|CDK20;nc|ENSG00000156345|Q8IZL9-4|CDK20;ENSG00000156345|ENST00000325303|CDK20;ENST00000603475.1_1_9:90584039-90584273:-|nuORF;ENST00000459720.5_1_9:90582379-90584273:-|nuORF;ENST00000486228.7_1_9:90582379-90585754:-|nuORF	nc|ENSG00000156345|Q8IZL9-3|CDK20	nc|ENSG00000156345|Q8IZL9-3|CDK20	MULTI-SECPEP	A375_MHC_IP_R1	1	392.9209289550781	3	392.542487	1174.60563	-0.19996	-7.8493E-05	0.1339	5.2563E-05	-0.066057	-2.593E-05	392.542487545366	23.559	0.3057	23.559	23.432	23.737	0					8	5	2	0	0	0	0.91442	1	6505	6505		10.315	2.7063	1	5860100			47944	6188	34800	35083	46873	46873					0.025312254311529614
SFKKPNLN	8	Unmodified	_SFKKPNLN_					0	0	0			REV__IL37|p.V52M|1|0.13|ENSG00000125571|chr2:112917137-112917137|G/A|missense_variant	REV__IL37|p.V52M|1|0.13|ENSG00000125571|chr2:112917137-112917137|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	474.6690368652344	2	474.269084	946.523616	-0.00040708	-1.9306E-07	-0.3314	-0.00015717	-0.33181	-0.00015737	474.26885644663776	48.937	0.65756	48.937	48.577	49.235	0					22	12	3	0	0	0	0.7256	1	17264	17264		26.884	2.8631	1	3818500	+		47945	18350	34801	35084	46874	46874					0.04821491134373446
SFKKPNLN	8	Unmodified	_SFKKPNLN_					0	0	0			REV__IL37|p.V52M|1|0.13|ENSG00000125571|chr2:112917137-112917137|G/A|missense_variant	REV__IL37|p.V52M|1|0.13|ENSG00000125571|chr2:112917137-112917137|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	474.66888427734375	2	474.269084	946.523616	-0.45442	-0.00021552	-0.39494	-0.00018731	-0.84935	-0.00040282	474.26894658502545	48.07	0.85715	48.831	48.378	49.235	0.76128					29	16	3	0	0	0	0.7256	1	18039	18039		26.884	2.8631	1	6062300	+		47946	18350	34801	35084	46875	46875					0.04821491134373446
SFKKPNLN	8	Unmodified	_SFKKPNLN_					0	0	0			REV__IL37|p.V52M|1|0.13|ENSG00000125571|chr2:112917137-112917137|G/A|missense_variant	REV__IL37|p.V52M|1|0.13|ENSG00000125571|chr2:112917137-112917137|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	474.269084	946.523616	-0.00040708	-1.9306E-07	-0.3314	-0.00015717	-0.33181	-0.00015737	474.26885644663776	48.937	0.65756	48.937	48.577	49.235	0	0.052911	2.6418E-05	NaN	26.884	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3818500	+		47947	18350	34801	35084							0.04821491134373446
SFKRKQKSPD	10	Unmodified	_SFKRKQKSPD_					0	0	0			REV__ENSG00000082014|ENST00000262188|SMARCD3;REV__nc|ENSG00000108604|Q92925-3|SMARCD2	REV__ENSG00000082014|ENST00000262188|SMARCD3	MULTI-SECPEP	A375_MHC_IP_R2	2	610.5845947265625	2	610.840936	1219.66732	-0.40983	-0.00025034	-0.46916	-0.00028658	-0.87898	-0.00053692	611.3424894891996	84.201	0.30658	84.941	84.766	85.073	0.73962					7	5	2	0	0	0	0.93405	1	32004	32004		8.7454	1.4562	1	974970	+		47948	16783;17546	34802	35085	46876	46876					0.06627293174665283
SFKSFIWKF	9	Unmodified	_SFKSFIWKF_					0	0	0			REV__nc|ENSG00000157106|Q96Q15-2|SMG1;REV__ENST00000566127.1_1_16:29562517-29572889:-|nuORF	REV__nc|ENSG00000157106|Q96Q15-2|SMG1	MSMS	A375_MHC_IP_R2	2	595.7048950195312	2	595.32386	1188.63317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.412	1	22.031	21.531	22.531	0.61932								0	0	0	0.15486	1	6740	6740		4.3292	0	1		+		47949	20012;26239	34803	35086	46877	46877					0.046394967536798504
SFKVGKKLKL	10	Unmodified	_SFKVGKKLKL_					0	0	0			REV__tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1	REV__tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	573.7213745117188	2	574.381709	1146.74886	-0.18934	-0.00010875	2.3777	0.0013657	2.1884	0.001257	574.8850768387537	73.209	0.30628	73.944	73.734	74.041	0.73541					7	5	2	0	0	0	0.9269	1	27786	27786		6.7232	5.5298	1	375350	+		47950	28769	34804	35087	46878	46878					0.18136020604561054
SFKWTDAVY	9	Unmodified	_SFKWTDAVY_					0	0	0		nc|ENSG00000138658|Q86YA3-6|ZGRF1;ENST00000514770.5_1_4:113532004-113549797:-|nuORF;nc|ENSG00000138658|Q86YA3-5|ZGRF1;ENST00000264370.9_1_4:113529030-113554332:-|nuORF;nc|ENSG00000138658|Q86YA3-4|ZGRF1;ENSG00000138658|ENST00000505019|ZGRF1	nc|ENSG00000138658|Q86YA3-6|ZGRF1	nc|ENSG00000138658|Q86YA3-6|ZGRF1	MSMS	A375_MHC_IP_R1	1	558.6785888671875	2	558.771657	1115.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.348	1	70.348	69.848	70.848	0								0	0	0	0.15411	1	25541	25541		14.838	0.25658	1				47951	5018	34805	35088	46879	46879					-0.024382497936812797
SFLAPSYPVP	10	Unmodified	_SFLAPSYPVP_					0	0	0		nc|ENSG00000124440|Q9Y2N7-4|HIF3A;ENST00000475432.6_1_19:46800333-46815736:+|nuORF	nc|ENSG00000124440|Q9Y2N7-4|HIF3A	nc|ENSG00000124440|Q9Y2N7-4|HIF3A	MULTI-SECPEP	A375_MHC_IP_R2	2	539.6834106445312	2	539.2844	1076.55425	-0.82342	-0.00044406	2.4827	0.0013389	1.6593	0.00089485	539.7841323555332	64.63	1.4244	65.37	64.902	66.326	0.74023					56	27	5	0	0	0	0.78945	1	24593	24593		25.399	7.253	1	2904700			47952	12419	34806	35089	46880	46880					0.01903224728744135
SFLFYFLLEFN	11	Unmodified	_SFLFYFLLEFN_					0	0	0			REV__ENST00000535549.5_1_11:128331948-128332230:-|nuORF	REV__ENST00000535549.5_1_11:128331948-128332230:-|nuORF	MSMS	A375_MHC_IP_R1	1	720.2359008789062	2	720.365921	1438.71729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.54	1	97.54	97.04	98.04	0								0	0	0	0.16203	1	35835	35835		8.1555	2.8586	1		+		47953	25902	34807	35090	46881	46881					0.01547983059958824
SFLHIYRKFFY	11	Unmodified	_SFLHIYRKFFY_					0	0	0			REV__ENST00000496191.1_1_7:104717586-104717914:+|nuORF	REV__ENST00000496191.1_1_7:104717586-104717914:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9803161621094	3	507.606478	1519.79761	-0.62857	-0.00031907	0.71513	0.000363	0.086551	4.3934E-05	507.9411607575623	43.136	0.50663	43.909	43.674	44.181	0.7724					21	9	3	0	0	0	1.0011	1	16003	16003		0.45452	0	1	6033100	+		47954	25457	34808	35091	46882	46882					0.05849889173623524
SFLIYKSRRLP	11	Unmodified	_SFLIYKSRRLP_					0	0	0		ENSG00000151952|ENST00000422113|TMEM132D;TMEM132D|p.L594Qfs*10|1|0.11|ENSG00000151952|chr12:129081883-129081901|GAGCCCAGCAGGTGGGCCA/-|frameshift_variant	ENSG00000151952|ENST00000422113|TMEM132D	ENSG00000151952|ENST00000422113|TMEM132D	MSMS	A375_MHC_IP_R1	1	460.67529296875	3	460.610111	1378.8085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.19	1	137.19	136.69	137.69	0								0	0	0	0.16351	1	52817	52817		0.45452	0.046251	1				47955	5937	34809	35092	46883	46883					0.13425291547923734
SFLKSQPYR	9	Unmodified	_SFLKSQPYR_					0	0	0		ENSG00000186205|ENST00000366910|MTARC1;nc|ENSG00000186205|Q5VT66-3|MTARC1;nc|ENSG00000186205|Q5VT66-2|MTARC1	ENSG00000186205|ENST00000366910|MTARC1	ENSG00000186205|ENST00000366910|MTARC1	MULTI-SECPEP	A375_MHC_IP_R1	1	375.9293212890625	3	375.873224	1124.59784	0.30256	0.00011373	1.667	0.00062658	1.9695	0.0007403	375.8734797601886	19.889	0.60878	19.889	19.521	20.129	0					17	11	2	0	0	0	0.69381	1	4890	4890		14.957	10.768	1	2182900			47956	8730	34810	35093	46884	46884					0.0405283422589946
SFLLSQLAYF	10	Unmodified	_SFLLSQLAYF_					0	0	0		nc|ENSG00000168679|O15374-4|SLC16A4;nc|ENSG00000168679|O15374-2|SLC16A4;nc|ENSG00000168679|O15374-5|SLC16A4;ENSG00000168679|ENST00000369779|SLC16A4	nc|ENSG00000168679|O15374-4|SLC16A4	nc|ENSG00000168679|O15374-4|SLC16A4	MULTI-MSMS	A375_MHC_IP_R2	2	397.280517578125	3	396.881497	1187.62266	-0.43638	-0.00017319	-1.6961	-0.00067314	-2.1324	-0.00084633	396.8808358719177	23.177	0.55714	23.807	23.572	24.129	0.63014					16	10	2	0	0	0	0.44858	1	7418	7418		21.799	0	1	7698700			47957	7334	34811	35094	46885	46885					0.03635469308596839
SFLLWPVPL	9	Unmodified	_SFLLWPVPL_					0	0	0			REV__nc|ENSG00000074621|O60721-3|SLC24A1	REV__nc|ENSG00000074621|O60721-3|SLC24A1	MULTI-SECPEP	A375_MHC_IP_R2	2	1071.0218505859375	1	1071.62373	1070.61645	0.10936	0.0001172	-1.9903	-0.0021328	-1.8809	-0.0020156	1071.6224093546102	120.18	1.2161	120.71	120.09	121.3	0.5321					37	23	2	0	0	0	0.74651	1	45896	45896		8.5933	0	1	60266000	+		47958	16638	34812	35095	46886	46886					0.083969958677244
SFLNHRSFGYQ	11	Unmodified	_SFLNHRSFGYQ_					0	0	0		ENST00000472623.1_1_X:69646726-69652182:+|nuORF	ENST00000472623.1_1_X:69646726-69652182:+|nuORF	ENST00000472623.1_1_X:69646726-69652182:+|nuORF	MSMS	A375_MHC_IP_R2	2	678.3815307617188	2	678.328193	1354.64183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.51	1	116.2	115.7	116.7	0.68999								0	0	0	0.16124	1	43545	43545		12.241	2.6967	1				47959	12376	34813	35096	46887	46887					-0.02130181347774851
SFLPESTEQQ	10	Unmodified	_SFLPESTEQQ_					0	0	0			REV__nc|ENSG00000172869|Q9Y485|DMXL1	REV__nc|ENSG00000172869|Q9Y485|DMXL1	MSMS	A375_MHC_IP_R1	1	583.1607666015625	2	583.272218	1164.52988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.562	1	71.562	71.062	72.062	0								0	0	0	0.14983	1	26007	26007		18.146	1.2041	1		+		47960	21176	34814	35097	46888	46888					-0.0458008021544174
SFLPFPFTWLN	11	Unmodified	_SFLPFPFTWLN_					0	0	0		ENST00000268758.13_1_17:26880984-26881137:-|nuORF	ENST00000268758.13_1_17:26880984-26881137:-|nuORF	ENST00000268758.13_1_17:26880984-26881137:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	685.251953125	2	684.852981	1367.69141	-0.94699	-0.00064855	-1.0374	-0.00071044	-1.9844	-0.001359	684.85251968551	138.18	0.30563	138.18	138	138.31	0					15	5	4	0	0	0	0.98673	1	53164	53164		10.151	10.151	1	5507800			47961	10363	34815	35098	46889	46889					0.022271336083349524
SFLQRLHVP	9	Unmodified	_SFLQRLHVP_					0	0	0		ENST00000489651.5_1_22:20929276-20940988:+|nuORF	ENST00000489651.5_1_22:20929276-20940988:+|nuORF	ENST00000489651.5_1_22:20929276-20940988:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	366.9255676269531	3	366.213581	1095.61891	0.15323	5.6115E-05	-0.74025	-0.00027109	-0.58702	-0.00021498	366.2146384190497	27.508	0.50517	27.508	27.229	27.735	0					19	9	3	0	0	0	0.72761	1	8258	8258		4.5289	0.33936	1	1662600			47962	12636	34816	35099	46890	46890					0.0749284432542936
SFLRGTVDPF	10	Unmodified	_SFLRGTVDPF_					0	0	0		SYT17|p.I384V|1|0.32|ENSG00000103528|chr16:19224760-19224760|A/G|missense_variant	SYT17|p.I384V|1|0.32|ENSG00000103528|chr16:19224760-19224760|A/G|missense_variant	SYT17|p.I384V|1|0.32|ENSG00000103528|chr16:19224760-19224760|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	380.9772644042969	3	380.201229	1137.58186	0.63249	0.00024047	0.42876	0.00016301	1.0613	0.00040349	380.20111266608467	44.419	0.25586	44.419	44.267	44.523	0					7	4	2	0	0	0	0.92227	1	15460	15460		7.9454	2.8979	1	1059200			47963	29284	34817	35100	46891	46891					0.018571279890011283
SFLRSKLTF	9	Unmodified	_SFLRSKLTF_					0	0	0		ENST00000492795.1_1_3:67568732-67570988:-|nuORF	ENST00000492795.1_1_3:67568732-67570988:-|nuORF	ENST00000492795.1_1_3:67568732-67570988:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	366.9053039550781	3	366.88172	1097.62333	-0.30308	-0.0001112	-2.2452	-0.00082374	-2.5483	-0.00093494	366.8806758268767	25.152	0.56	25.795	25.668	26.229	0.64368					21	10	3	0	0	0	0.6656	1	8511	8511		6.6304	1.3335	1	4212400			47964	12674	34818	35101	46892	46892					0.07842308748308824
SFLSYLAPKY	10	Unmodified	_SFLSYLAPKY_					0	0	0			REV__tr|U7T4Y7|U7T4Y7_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00608PE=3SV=1	REV__tr|U7T4Y7|U7T4Y7_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00608PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	396.9277648925781	3	396.881497	1187.62266	-0.43638	-0.00017319	-1.6961	-0.00067314	-2.1324	-0.00084633	396.8808358719177	23.177	0.55714	23.807	23.572	24.129	0.63014					16	10	2	0	0	0	0.59108	1	7378	7378		14.218	3.3192	1	7698700	+		47965	28810	34819	35102	46893	46893					0.036354693086195766
SFLTWYLI	8	Unmodified	_SFLTWYLI_					0	0	0			REV__ENSG00000172954|ENST00000379509|LCLAT1	REV__ENSG00000172954|ENST00000379509|LCLAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	521.5068359375	2	521.784036	1041.55352	-0.70839	-0.00036963	-0.3164	-0.00016509	-1.0248	-0.00053472	521.7838040689077	85.437	0.81197	85.437	85.21	86.022	0					24	15	2	0	0	0	0.85124	1	31407	31407		19.439	0	1	2557600	+		47966	21184	34820	35103	46894	46894					0.03440430079695034
SFLVYSYSS	9	Unmodified	_SFLVYSYSS_					0	0	0			REV__ENSG00000149133|ENST00000278409|OR5F1	REV__ENSG00000149133|ENST00000278409|OR5F1	MULTI-SECPEP	A375_MHC_IP_R2	2	1052.98486328125	1	1052.4935	1051.48623	0.24897	0.00026203	3.0727	0.003234	3.3217	0.003496	1052.4978029953936	138.32	0.50668	138.4	138.17	138.67	0.083969					12	9	3	0	0	0	0.78348	1	54178	54178		7.9102	0.62092	1	4075700	+		47967	19662	34821	35104	46895	46895					-0.03745644921900748
SFLYTLDNISH	11	Unmodified	_SFLYTLDNISH_					0	0	0		ENST00000345317.6_1_7:26706920-26707058:-|nuORF	ENST00000345317.6_1_7:26706920-26707058:-|nuORF	ENST00000345317.6_1_7:26706920-26707058:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	436.6361389160156	3	437.218949	1308.63502	-0.5564	-0.00024327	-1.4056	-0.00061456	-1.962	-0.00085783	437.21850710780535	18.864	0.14512	19.467	19.438	19.583	0.60308					5	3	2	0	0	0	0.9836	1	5706	5706		6.2344	2.3884	1	12079000			47968	10905	34822	35105	46896	46896					-0.0069553901901144854
SFMCDDYEPY	10	Unmodified	_SFMCDDYEPY_					0	0	0			REV__ENSG00000077935|ENST00000357450|SMC1B	REV__ENSG00000077935|ENST00000357450|SMC1B	MSMS	A375_MHC_IP_R1	1	635.3689575195312	2	635.225565	1268.43658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.967	1	92.967	92.467	93.467	0								0	0	0	0.15591	1	34170	34170		1.6526	0.17072	1		+		47969	16699	34823	35106	46897	46897					-0.18690463984512462
SFMTHPEF	8	Oxidation (M)	_SFM(Oxidation (M))THPEF_		SFM(1)THPEF		SFM(85)THPEF	0	0	1		nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4;ENST00000484746.1_3_1:203702465-203708979:+|nuORF;ENST00000367218.7_1_1:203702465-203708979:+|nuORF	nc|ENSG00000058668|P23634-7|ATP2B4	nc|ENSG00000058668|P23634-7|ATP2B4	MULTI-MSMS	A375_MHC_IP_R1	1	506.615234375	2	506.21566	1010.41677	-0.40617	-0.00020561	-0.12412	-6.283E-05	-0.53029	-0.00026844	506.2154842831937	47.309	0.46165	47.309	47.055	47.517	0					21	8	3	0	0	0	0.15346	1	16624	16624		85.357	60.683	1	4090400			47970	1295	34824	35107	46898	46898		35			-0.08802427142302349
SFMTHPEF	8	Oxidation (M)	_SFM(Oxidation (M))THPEF_		SFM(1)THPEF		SFM(85)THPEF	0	0	1		nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4;ENST00000484746.1_3_1:203702465-203708979:+|nuORF;ENST00000367218.7_1_1:203702465-203708979:+|nuORF	nc|ENSG00000058668|P23634-7|ATP2B4	nc|ENSG00000058668|P23634-7|ATP2B4	MULTI-MSMS	A375_MHC_IP_R2	2	506.6152648925781	2	506.21566	1010.41677	-0.60152	-0.0003045	-0.078438	-3.9706E-05	-0.67996	-0.00034421	506.21552469970493	46.46	0.50907	47.225	46.957	47.466	0.76519					22	9	3	0	0	0	0.15346	1	17379	17379		85.357	60.683	1	4487900			47971	1295	34824	35107	46899	46899		35			-0.08802427142302349
SFMTHPEF	8	Unmodified	_SFMTHPEF_					0	0	0		nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4;ENST00000484746.1_3_1:203702465-203708979:+|nuORF;ENST00000367218.7_1_1:203702465-203708979:+|nuORF	nc|ENSG00000058668|P23634-7|ATP2B4	nc|ENSG00000058668|P23634-7|ATP2B4	MULTI-MSMS	A375_MHC_IP_R1	1	498.61834716796875	2	498.218203	994.421853	-0.54216	-0.00027011	0.40997	0.00020425	-0.13219	-6.5859E-05	498.2184338054541	66.031	0.60936	66.031	65.717	66.326	0					19	11	2	0	0	0	0.16592	1	23909	23909		77.984	47.76	1	2847600			47972	1295	34824	35108	46900	46900					-0.07558123279693518
SFMTHPEF	8	Unmodified	_SFMTHPEF_					0	0	0		nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4;ENST00000484746.1_3_1:203702465-203708979:+|nuORF;ENST00000367218.7_1_1:203702465-203708979:+|nuORF	nc|ENSG00000058668|P23634-7|ATP2B4	nc|ENSG00000058668|P23634-7|ATP2B4	MULTI-MSMS	A375_MHC_IP_R2	2	498.6180725097656	2	498.218203	994.421853	-0.59231	-0.0002951	-0.77722	-0.00038722	-1.3695	-0.00068232	498.21823092216414	65.205	0.50769	65.943	65.613	66.121	0.73811					19	9	3	0	0	0	0.16592	1	24697	24697		77.984	58.545	1	2174800			47973	1295	34824	35108	46901	46901					-0.07558123279693518
SFNCHMKT	8	Unmodified	_SFNCHMKT_					0	0	0		CTCFL|p.R274C|2|0.22|ENSG00000124092|chr20:57519312-57519312|G/A|missense_variant	CTCFL|p.R274C|2|0.22|ENSG00000124092|chr20:57519312-57519312|G/A|missense_variant	CTCFL|p.R274C|2|0.22|ENSG00000124092|chr20:57519312-57519312|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	484.1605224609375	2	484.209855	966.405157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.118	1	81.862	81.362	82.362	0.74474								0	0	0	0.16876	1	30802	30802		8.5933	0.68312	1				47974	680	34825	35109	46902	46902					-0.07938947437298793
SFNEAMTQI	9	Oxidation (M)	_SFNEAM(Oxidation (M))TQI_		SFNEAM(1)TQI		SFNEAM(150)TQI	0	0	1		nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	MULTI-MSMS	A375_MHC_IP_R2	2	529.1364135742188	2	528.736957	1055.45936	-0.89585	-0.00047367	-0.32622	-0.00017248	-1.2221	-0.00064615	528.736740779346	52.155	0.45776	52.907	52.626	53.083	0.75225					15	8	2	0	0	0	0.0018976	1	19634	19634		145.13	82.557	1	5143900			47975	5338	34826	35110	46903	46903		287			-0.06615076804746423
SFNGHIAFSI	10	Unmodified	_SFNGHIAFSI_					0	0	0			REV__ENSG00000189091|ENST00000302516|SF3B3	REV__ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	A375_MHC_IP_R1	1	365.9389953613281	3	364.853941	1091.53999	0.16169	5.8993E-05	0.018053	6.5866E-06	0.17974	6.5579E-05	364.85395381322917	58.912	2.2893	58.912	58.531	60.821	0					143	44	6	0	0	0	0.71245	1	21364	21364		3.5871	3.5871	1	233500000	+		47976	22139	34827	35111	46904	46904					-0.0021142769951438822
SFNLKQRLE	9	Unmodified	_SFNLKQRLE_					0	0	0			REV__ENSG00000214102|ENST00000397541|WEE2	REV__ENSG00000214102|ENST00000397541|WEE2	MULTI-SECPEP	A375_MHC_IP_R2	2	378.5976867675781	3	378.880379	1133.61931	-0.37622	-0.00014254	-0.71204	-0.00026978	-1.0883	-0.00041232	379.2153562987591	52.575	0.70767	53.327	53.032	53.74	0.75225					34	13	4	0	0	0	0.76642	1	19743	19743		8.9762	0.53194	1	2991500	+		47977	22645	34828	35112	46905	46905					0.05784219254610434
SFNWTTNREYR	11	Unmodified	_SFNWTTNREYR_					0	0	0			REV__ENSG00000212128|ENST00000390677|TAS2R13	REV__ENSG00000212128|ENST00000390677|TAS2R13	MSMS	A375_MHC_IP_R1	1	737.5027465820312	2	737.347114	1472.67968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.88	1	136.88	136.38	137.38	0								0	0	0	0.16337	1	52710	52710		1.1933	0	1		+		47978	22605	34829	35113	46906	46906					-0.037757151529604016
SFPEGYNTV	9	Unmodified	_SFPEGYNTV_					0	0	0		nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;ENST00000466514.5_1_7:150731570-150742433:+|nuORF;nc|ENSG00000197150|Q9NUT2-5|ABCB8;nc|ENSG00000197150|Q9NUT2-4|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8;ENST00000482899.1_1_7:150737654-150742433:+|nuORF	nc|ENSG00000197150|Q9NUT2-3|ABCB8	nc|ENSG00000197150|Q9NUT2-3|ABCB8	MULTI-MSMS	A375_MHC_IP_R2	2	507.2051696777344	2	507.232364	1012.45018	-0.73608	-0.00037336	0.040034	2.0307E-05	-0.69605	-0.00035306	507.23237584767196	76.676	1.37	77.417	76.893	78.263	0.74052					68	26	4	0	0	0	0.4867	1	29277	29277		20.454	2.3186	1	5392800			47979	9123	34830	35114	46907	46907					-0.055551020987536504
SFPGAGLSNL	10	Unmodified	_SFPGAGLSNL_					0	0	0			REV__ENSG00000102531|ENST00000492622|FNDC3A	REV__ENSG00000102531|ENST00000492622|FNDC3A	MULTI-MSMS	A375_MHC_IP_R1	1	482.1506042480469	2	481.750724	961.486896	-0.41223	-0.00019859	-0.33576	-0.00016175	-0.74798	-0.00036034	481.75063959994634	83.558	0.45721	83.558	83.329	83.786	0					13	8	2	0	0	0	0.27246	1	30610	30610		41.84	1.8823	1	1705000	+		47980	17223	34831	35115	46908	46908					0.0046119451779986775
SFPGAGLSNL	10	Unmodified	_SFPGAGLSNL_					0	0	0			REV__ENSG00000102531|ENST00000492622|FNDC3A	REV__ENSG00000102531|ENST00000492622|FNDC3A	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	481.750724	961.486896	-0.41223	-0.00019859	-0.33576	-0.00016175	-0.74798	-0.00036034	481.75063959994634	83.558	0.45721	83.558	83.329	83.786	0	0.055465	0.00040724	NaN	41.84	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1705000	+		47981	17223	34831	35115							0.0046119451779986775
SFPGIEKFKGQ	11	Unmodified	_SFPGIEKFKGQ_					0	0	0		nc|ENSG00000131781|P49326-2|FMO5;nc|ENSG00000131781|P49326-3|FMO5;ENSG00000131781|ENST00000254090|FMO5	nc|ENSG00000131781|P49326-2|FMO5	nc|ENSG00000131781|P49326-2|FMO5	MSMS	A375_MHC_IP_R1	1	413.2909240722656	3	413.224034	1236.65027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.748	1	29.748	29.248	30.248	0								0	0	0	0.13933	1	9366	9366		17.572	3.3537	1				47982	4351	34832	35116	46909	46909					0.04141372568847146
SFPGSKEY	8	Unmodified	_SFPGSKEY_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	A375_MHC_IP_R1	1	458.1163330078125	2	457.71635	913.418148	-0.57556	-0.00026344	0.49912	0.00022845	-0.076438	-3.4987E-05	457.71641381635857	30.216	0.95827	30.216	29.899	30.857	0					40	18	3	0	0	0	0.7011	2	9565	9565;9637		34.402	5.9149	1	5013300			47983	1791	34833	35117	46910;46911	46910					-0.042024697819101675
SFPGSKEY	8	Unmodified	_SFPGSKEY_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	A375_MHC_IP_R2	2	458.11602783203125	2	457.71635	913.418148	-0.84409	-0.00038635	0.4605	0.00021078	-0.38359	-0.00017558	457.7164445473073	29.705	1.0631	30.404	29.93	30.993	0.69872					39	20	3	0	0	0	0.7011	1	10358	10358		34.402	5.9149	1	6164700			47984	1791	34833	35117	46912	46912					-0.042024697819101675
SFPLERSSV	9	Unmodified	_SFPLERSSV_					0	0	0		ENST00000552699.5_1_12:50157076-50157310:+|nuORF	ENST00000552699.5_1_12:50157076-50157310:+|nuORF	ENST00000552699.5_1_12:50157076-50157310:+|nuORF	MSMS	A375_MHC_IP_R1	1	511.18463134765625	2	511.269281	1020.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.058	1	50.058	49.558	50.558	0								0	0	0	0.1521	1	17722	17722		18.146	1.2041	1				47985	13393	34834	35118	46913	46913					0.0145686606357458
SFPPAIPG	8	Unmodified	_SFPPAIPG_					0	0	0		ENSG00000112787|ENST00000680143|FBRSL1;nc|ENSG00000112787|Q9HCM7|FBRSL1	ENSG00000112787|ENST00000680143|FBRSL1	ENSG00000112787|ENST00000680143|FBRSL1	MSMS	A375_MHC_IP_R2	2	393.15557861328125	2	393.213246	784.41194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.361	1	70.095	69.595	70.595	0.73421								0	0	0	0.16876	1	26285	26285		6.3541	0	1				47986	3111	34835	35119	46914	46914					0.011110567772334434
SFPPLIQL	8	Unmodified	_SFPPLIQL_					0	0	0		ENST00000571688.5_2_16:11643218-11643479:-|nuORF	ENST00000571688.5_2_16:11643218-11643479:-|nuORF	ENST00000571688.5_2_16:11643218-11643479:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	915.2405395507812	1	914.534581	913.527304	-0.22996	-0.0002103	-2.0624	-0.0018861	-2.2924	-0.0020964	914.5332627070616	117.56	0.5551	118.17	117.73	118.29	0.60909					12	10	2	0	0	0	0.972	1	44508	44508		13.508	0	1	20575000			47987	13609	34836	35120	46915	46915					0.06708160908249283
SFPSLSGGY	9	Unmodified	_SFPSLSGGY_					0	0	0			REV__ENSG00000100219|ENST00000344347|XBP1	REV__ENSG00000100219|ENST00000344347|XBP1	MULTI-MSMS	A375_MHC_IP_R2	2	458.15802001953125	2	457.71635	913.418148	-0.84409	-0.00038635	0.4605	0.00021078	-0.38359	-0.00017558	457.7164445473073	29.705	1.0631	30.404	29.93	30.993	0.69872					39	20	3	0	0	0	0.32899	1	10316	10316		28.487	1.6032	1	6164700	+		47988	17060	34837	35121	46916	46916					-0.0420246978188743
SFPSVREL	8	Unmodified	_SFPSVREL_					0	0	0		ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	MULTI-MSMS	A375_MHC_IP_R2	2	468.1524963378906	2	467.753267	933.491981	-0.92996	-0.00043499	0.11051	5.1691E-05	-0.81945	-0.0003833	467.75321561057496	61.803	0.70432	62.546	62.17	62.874	0.74263					33	13	3	0	0	0	0.67331	1	23376	23376		41.84	1.8823	1	6650700			47989	2599	34838	35122	46917	46917					0.022574983804247495
SFQGNQLY	8	Unmodified	_SFQGNQLY_					0	0	0			REV__nc|ENSG00000188089|Q3MJ16-2|PLA2G4E	REV__nc|ENSG00000188089|Q3MJ16-2|PLA2G4E	MULTI-MSMS	A375_MHC_IP_R1	1	478.6617126464844	2	478.727249	955.439946	-0.46515	-0.00022268	0.23931	0.00011456	-0.22584	-0.00010811	478.7271863547546	55.195	0.40557	55.195	54.975	55.381	0					11	7	2	0	0	0	0.7758	1	19801	19801		10.183	2.8942	1	598940	+		47990	22072	34839	35123	46918	46918					-0.039556650333452126
SFQHNRRLYVY	11	Unmodified	_SFQHNRRLYVY_					0	0	0		ENSG00000182218|ENST00000330710|HHIPL1;nc|ENSG00000182218|Q96JK4-2|HHIPL1	ENSG00000182218|ENST00000330710|HHIPL1	ENSG00000182218|ENST00000330710|HHIPL1	MULTI-SECPEP	A375_MHC_IP_R1	1	494.3580322265625	3	494.92487	1481.75278	-0.24652	-0.00012201	-0.84467	-0.00041805	-1.0912	-0.00054005	494.924384565478	45.899	0.45708	45.899	45.687	46.144	0					17	8	3	0	0	0	0.99883	1	16149	16149		4.7159	3.6062	1	4061500			47991	8389	34840	35124	46919	46919					0.0311745836031605
SFRCLAFE	8	Unmodified	_SFRCLAFE_					0	0	0		CON__ENSEMBL:ENSBTAP00000016046	CON__ENSEMBL:ENSBTAP00000016046	CON__ENSEMBL:ENSBTAP00000016046	MSMS	A375_MHC_IP_R2	2	486.6554870605469	2	486.73402	971.453487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.593	1	45.362	44.862	45.862	0.7691								0	0	0	0.16876	1	16647	16647		27.629	2.2295	1			+	47992	569	34841	35125	46920	46920					-0.03338130525753513
SFREDLVLST	10	Unmodified	_SFREDLVLST_					0	0	0		nc|ENSG00000147724|Q49AJ0-3|FAM135B;nc|ENSG00000147724|Q49AJ0-4|FAM135B;nc|ENSG00000147724|Q49AJ0-2|FAM135B;ENST00000482951.6_1_8:139144838-139379577:-|nuORF;ENSG00000147724|ENST00000395297|FAM135B	nc|ENSG00000147724|Q49AJ0-3|FAM135B	nc|ENSG00000147724|Q49AJ0-3|FAM135B	MULTI-SECPEP	A375_MHC_IP_R1	1	388.95587158203125	3	389.539911	1165.5979	0.037997	1.4801E-05	0.64168	0.00024996	0.67967	0.00026476	389.54034118317173	27.659	0.4544	27.659	27.482	27.937	0					11	8	2	0	0	0	0.79457	1	8521	8521		17.863	3.4578	1	1351100			47993	5703	34842	35126	46921	46921					0.02172789435235245
SFREGDEWEA	10	Unmodified	_SFREGDEWEA_					0	0	0			REV__ZSWIM8|p.R856Efs*21|1|0.46|ENSG00000214655|chr10:73793984-73793984|C/-|frameshift_variant	REV__ZSWIM8|p.R856Efs*21|1|0.46|ENSG00000214655|chr10:73793984-73793984|C/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	409.1507873535156	3	409.17552	1224.50473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.65	1	143.68	143.18	144.18	0.024414								0	0	0	0.15541	1	56134	56134		1.5923	0.96546	1		+		47994	22656	34843	35127	46922	46922					-0.09854135017985755
SFREGDEWEA	10	Unmodified	_SFREGDEWEA_					0	0	0			REV__ZSWIM8|p.R856Efs*21|1|0.46|ENSG00000214655|chr10:73793984-73793984|C/-|frameshift_variant	REV__ZSWIM8|p.R856Efs*21|1|0.46|ENSG00000214655|chr10:73793984-73793984|C/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	409.15557861328125	3	409.17552	1224.50473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.86	1	143.88	143.38	144.38	0.024414								0	0	0	0.15541	1	56209	56209		1.5923	0	1		+		47995	22656	34843	35127	46923	46923					-0.09854135017985755
SFRGSIKPK	9	Unmodified	_SFRGSIKPK_					0	0	0			REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	509.6529846191406	2	510.303458	1018.59236	-0.41579	-0.00021218	0.59684	0.00030457	0.18104	9.2387E-05	510.30347099972795	33.458	0.30556	33.458	33.342	33.648	0					7	5	2	0	0	0	0.74412	1	10889	10889		14.838	10.509	1	1161600	+		47996	28270	34844	35128	46924	46924					0.08381155434085485
SFRGSIKPK	9	Unmodified	_SFRGSIKPK_					0	0	0			REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	510.303458	1018.59236	-0.79973	-0.00040811	0.41546	0.00021201	-0.38427	-0.00019609	510.30333894571953	32.629	0.25468	33.366	33.213	33.468	0.73692	-0.045894	-7.9468E-05	NaN	14.838	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	983790	+		47997	28270	34844	35128							0.08381155434085485
SFRPRPLY	8	Unmodified	_SFRPRPLY_					0	0	0			REV__ENST00000522519.5_1_8:72756566-72875195:+|nuORF	REV__ENST00000522519.5_1_8:72756566-72875195:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	517.7049560546875	2	518.290351	1034.56615	-0.70919	-0.00036757	-2.9537	-0.0015309	-3.6629	-0.0018984	518.2887444537095	76.498	0.20506	77.238	77.146	77.352	0.74052					5	3	2	0	0	0	0.93661	1	29032	29032		15.847	5.7733	1	554080	+		47998	25732	34845	35129	46925	46925					0.05024886262594919
SFRRPRWQRRW	11	Unmodified	_SFRRPRWQRRW_					0	0	0			REV__ENSG00000089692|ENST00000203629|LAG3	REV__ENSG00000089692|ENST00000203629|LAG3	MULTI-SECPEP	A375_MHC_IP_R1	1	544.1536254882812	3	544.302786	1629.88653	-0.28798	-0.00015675	-1.7686	-0.00096264	-2.0565	-0.0011194	544.6359344371282	49.692	0.55989	49.692	49.285	49.845	0					22	10	4	0	0	0	1.0015	1	17514	17514		0.094841	0	1	3348800	+		47999	16917	34846	35130	46926	46926					0.09678161976512456
SFRRPRWQRRW	11	Unmodified	_SFRRPRWQRRW_					0	0	0			REV__ENSG00000089692|ENST00000203629|LAG3	REV__ENSG00000089692|ENST00000203629|LAG3	MSMS	A375_MHC_IP_R2	2	815.9644165039062	2	815.950541	1629.88653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.48	1	118.14	117.64	118.64	0.65962								0	0	0	0.16351	1	44462	44462		1.3295	1.0225	1		+		48000	16917	34846	35130	46927	46927					0.09678161976512456
SFRSSSQPPQY	11	Unmodified	_SFRSSSQPPQY_					0	0	0			REV__ROBO1|p.N1088Sfs*50|1|0.03|ENSG00000169855|chr3:78635883-78635884|-/AGTGGCAGTGTATTGTGAAAGC|frameshift_variant	REV__ROBO1|p.N1088Sfs*50|1|0.03|ENSG00000169855|chr3:78635883-78635884|-/AGTGGCAGTGTATTGTGAAAGC|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	428.6007385253906	3	428.538681	1282.59421	-0.4539	-0.00019451	-0.22835	-9.7855E-05	-0.68225	-0.00029237	428.53874561065885	23.881	0.25538	24.511	24.333	24.588	0.63014					7	4	2	0	0	0	0.99738	1	7672	7672		1.1098	0	1	3098100	+		48001	27892	34847	35131	46928	46928					-0.03577880338616524
SFRVLVVSAKF	11	Unmodified	_SFRVLVVSAKF_					0	0	0		ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B;nc|ENSG00000183336|Q9H3K6-2|BOLA2	ENSG00000183336|ENST00000330978|BOLA2	ENSG00000183336|ENST00000330978|BOLA2	MULTI-MSMS	A375_MHC_IP_R1	1	418.6085510253906	3	418.251924	1251.73394	0.081515	3.4094E-05	-0.095129	-3.9788E-05	-0.013613	-5.6937E-06	418.2518538197631	76.815	0.35746	76.815	76.572	76.93	0					11	6	2	0	0	0	0.73195	1	28049	28049		7.0371	1.9896	1	894330			48002	7425	34848	35132	46929	46929					0.11814528736545071
SFSCSAFTYI	10	Unmodified	_SFSCSAFTYI_					0	0	0			REV__ENSG00000103313|ENST00000219596|MEFV	REV__ENSG00000103313|ENST00000219596|MEFV	MSMS	A375_MHC_IP_R2	2	563.2136840820312	2	563.2497	1124.48485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.876	1	79.621	79.121	80.121	0.74474								0	0	0	0.14601	1	29939	29939		25.399	11.493	1		+		48003	17269	34849	35133	46930	46930					-0.0724160228232904
SFSDVPLGAI	10	Unmodified	_SFSDVPLGAI_					0	0	0			REV__ENSG00000158486|ENST00000698260|DNAH3	REV__ENSG00000158486|ENST00000698260|DNAH3	MULTI-SECPEP	A375_MHC_IP_R1	1	502.63983154296875	2	503.266207	1004.51786	-0.1223	-6.155E-05	0.18604	9.3628E-05	0.06374	3.2078E-05	503.26613758892074	38.77	0.45665	38.77	38.526	38.983	0					15	8	3	0	0	0	0.65982	1	13272	13272		14.838	0	1	3703700	+		48004	20079	34850	35134	46931	46931					0.01578347832048621
SFSFLLFMT	9	Unmodified	_SFSFLLFMT_					0	0	0		ENST00000466496.5_1_1:149902724-149908701:-|nuORF;nc|ENSG00000014914|A4FU01-5|MTMR11;ENST00000482343.5_1_1:149902724-149908540:-|nuORF;ENST00000369140.7_1_1:149902724-149903177:-|nuORF	ENST00000466496.5_1_1:149902724-149908701:-|nuORF	ENST00000466496.5_1_1:149902724-149908701:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1093.49072265625	1	1092.54343	1091.53615	0.21668	0.00023673	3.6092	0.0039432	3.8258	0.0041799	1092.547967792733	118.01	0.55733	118.01	117.66	118.22	0					13	10	2	0	0	0	0.46038	1	43334	43334		21.747	3.6117	1	23952000			48005	12262	34851	35135	46932	46932					-0.0059523351760617516
SFSITKKESLL	11	Unmodified	_SFSITKKESLL_					0	0	0			REV__ENSG00000197403|ENST00000641846|OR6N1	REV__ENSG00000197403|ENST00000641846|OR6N1	MULTI-SECPEP	A375_MHC_IP_R2	2	418.27386474609375	3	418.243094	1251.70745	-0.017008	-7.1136E-06	0.0037307	1.5603E-06	-0.013278	-5.5533E-06	418.243146366889	64.442	2.1852	65.182	64.446	66.631	0.74022					63	42	3	0	0	0	0.99681	1	24699	24699		1.1098	0	1	3136900	+		48006	22285	34852	35136	46933	46933					0.0916679505457978
SFSKVCQKC	9	Unmodified	_SFSKVCQKC_					0	0	0			REV__nc|ENSG00000197054|Q0D2J5-3|ZNF763	REV__nc|ENSG00000197054|Q0D2J5-3|ZNF763	MULTI-MSMS	A375_MHC_IP_R1	1	515.6754760742188	2	515.246437	1028.47832	-0.47388	-0.00024416	-0.75228	-0.00038761	-1.2262	-0.00063177	515.2459955339776	93.692	0.76186	93.692	93.279	94.041	0					33	14	3	0	0	0	0.60101	1	34299	34299		14.838	2.3067	1	5467700	+		48007	22249	34853	35137	46934	46934					-0.03477818714691239
SFSLKLKKW	9	Unmodified	_SFSLKLKKW_					0	0	0			REV__ENST00000556408.5_1_14:71787209-71880727:+|nuORF	REV__ENST00000556408.5_1_14:71787209-71880727:+|nuORF	MSMS	A375_MHC_IP_R2	2	568.7437744140625	2	568.844959	1135.67537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.935	1	78.678	78.178	79.178	0.74293								0	0	0	0.15486	1	29596	29596		12.532	1.7076	1		+		48008	26107	34854	35138	46935	46935					0.11295472162078113
SFSLLAAL	8	Unmodified	_SFSLLAAL_					0	0	0		ENST00000472219.5_1_20:44469042-44469354:+|nuORF	ENST00000472219.5_1_20:44469042-44469354:+|nuORF	ENST00000472219.5_1_20:44469042-44469354:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	821.876708984375	1	821.476731	820.469455	-0.77831	-0.00063936	0.94087	0.0007729	0.16256	0.00013354	821.4771633178952	120.07	0.45641	120.6	120.4	120.85	0.5321					11	8	2	0	0	0	0.12239	1	45812	45812		78.445	0	1	14454000			48009	12368	34855	35139	46936	46936					0.05203898982802002
SFSLRLAGT	9	Unmodified	_SFSLRLAGT_					0	0	0		ENSG00000106009|ENST00000340611|BRAT1;nc|ENSG00000106009|Q6PJG6-2|BRAT1;ENST00000469750.5_1_7:2583168-2595320:-|nuORF	ENSG00000106009|ENST00000340611|BRAT1	ENSG00000106009|ENST00000340611|BRAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	475.66021728515625	2	476.266542	950.51853	-0.32811	-0.00015627	-0.55903	-0.00026625	-0.88713	-0.00042251	476.2660377652768	43.174	0.66098	43.174	42.739	43.4	0					23	12	3	0	0	0	0.5212	1	14858	14858		20.415	11.031	1	5163800			48010	2658	34856	35140	46937	46937					0.04129187271757928
SFSLRMMNDF	10	Unmodified	_SFSLRMMNDF_					0	0	0		ENST00000442668.6_3_9:95060594-95062262:-|nuORF;ENST00000463593.6_1_9:95061087-95062271:-|nuORF	ENST00000442668.6_3_9:95060594-95062262:-|nuORF	ENST00000442668.6_3_9:95060594-95062262:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	625.0313720703125	2	624.281008	1246.54746	-0.92714	-0.0005788	-1.2959	-0.00080899	-2.223	-0.0013878	624.2792131527588	65.662	1.9346	66.4	65.613	67.547	0.73811					59	37	3	0	0	0	0.88918	1	24912	24912		8.7454	0	1	3686300			48011	11997	34857	35141	46938	46938					-0.06594779485772051
SFSNEFQIK	9	Unmodified	_SFSNEFQIK_					0	0	0			REV__CALCRL|p.G407E|1|0.44|ENSG00000064989|chr2:187346350-187346350|C/T|missense_variant	REV__CALCRL|p.G407E|1|0.44|ENSG00000064989|chr2:187346350-187346350|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	366.9646301269531	3	367.185468	1098.53457	0.12489	4.5857E-05	0.32353	0.00011879	0.44842	0.00016465	367.1853373633499	32.348	0.61118	33.085	32.806	33.417	0.73691					36	11	5	0	0	0	0.76187	1	11571	11571		2.2828	0	1	31853000	+		48012	15567	34858	35142	46939	46939					-0.010751512820206699
SFSNEKGGV	9	Unmodified	_SFSNEKGGV_					0	0	0			REV__ENST00000465856.5_1_6:26421698-26421809:+|nuORF	REV__ENST00000465856.5_1_6:26421698-26421809:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	462.65264892578125	2	462.724707	923.43486	-0.45506	-0.00021057	0.8607	0.00039827	0.40565	0.0001877	462.7248704006383	36.463	0.35615	36.463	36.287	36.644	0					9	6	2	0	0	0	0.4867	1	12229	12229		20.454	1.1966	1	1666600	+		48013	25029	34859	35143	46940	46940					-0.029919688959353152
SFSNEKGGV	9	Unmodified	_SFSNEKGGV_					0	0	0			REV__ENST00000465856.5_1_6:26421698-26421809:+|nuORF	REV__ENST00000465856.5_1_6:26421698-26421809:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	462.724707	923.43486	-0.72653	-0.00033618	1.2035	0.00055689	0.47696	0.0002207	462.7251576667273	35.595	0.40558	36.358	36.233	36.638	0.76338	-0.052588	0.00019017	NaN	20.454	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1405600	+		48014	25029	34859	35143							-0.029919688959353152
SFSNHQALRG	10	Unmodified	_SFSNHQALRG_					0	0	0			REV__ENST00000494346.1_1_2:198436734-198482697:-|nuORF	REV__ENST00000494346.1_1_2:198436734-198482697:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1116.9537353515625	1	1116.55448	1115.5472	-0.28582	-0.00031914	-0.02128	-2.376E-05	-0.3071	-0.0003429	1116.5542972835935	143.76	0.35016	143.76	143.58	143.94	0					11	6	3	0	0	0	0.72747	1	55178	55178		0	0	1	2958500	+		48015	20324	34860	35144	46941	46941					-0.005946950991301492
SFSNHQALRG	10	Unmodified	_SFSNHQALRG_					0	0	0			REV__ENST00000494346.1_1_2:198436734-198482697:-|nuORF	REV__ENST00000494346.1_1_2:198436734-198482697:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	1116.55448	1115.5472	-0.28582	-0.00031914	-0.02128	-2.376E-05	-0.3071	-0.0003429	1116.5542972835935	143.76	0.35016	143.76	143.58	143.94	0	-0.026009	-2.2703E-05	NaN	0	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2958500	+		48016	20324	34860	35144							-0.005946950991301492
SFSNHQALRG	10	Unmodified	_SFSNHQALRG_					0	0	0			REV__ENST00000494346.1_1_2:198436734-198482697:-|nuORF	REV__ENST00000494346.1_1_2:198436734-198482697:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	1116.55448	1115.5472	0.30645	0.00034217	0.017721	1.9786E-05	0.32417	0.00036196	1116.554399715859	143.79	0.35361	143.81	143.64	143.99	0.024414	0.026009	2.0844E-05	NaN	0	13	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2345000	+		48017	20324	34860	35144							-0.005946950991301492
SFSRRKFLF	9	Unmodified	_SFSRRKFLF_					0	0	0			REV__ENST00000418559.5_1_2:183594660-183605065:+|nuORF	REV__ENST00000418559.5_1_2:183594660-183605065:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	396.16473388671875	3	396.560981	1186.66111	0.030656	1.2157E-05	-0.016283	-6.4573E-06	0.014373	5.6997E-06	396.8951107393519	54.492	0.60633	54.492	54.013	54.619	0					14	11	2	0	0	0	0.78351	1	19435	19435		2.7352	0	1	1573400	+		48018	24557	34861	35145	46942	46942					0.07524819733771437
SFSSGRHYW	9	Unmodified	_SFSSGRHYW_					0	0	0		ENSG00000162722|ENST00000366481|TRIM58	ENSG00000162722|ENST00000366481|TRIM58	ENSG00000162722|ENST00000366481|TRIM58	MULTI-MSMS	A375_MHC_IP_R1	1	564.1575317382812	2	563.756872	1125.49919	-0.4498	-0.00025358	0.58455	0.00032955	0.13476	7.597E-05	563.757437517056	19.969	0.65877	19.969	19.471	20.129	0					26	12	3	0	0	0	0.72507	1	5005	5005		4.756	4.756	1	3987400			48019	6581	34862	35146	46943	46943					-0.058537690191542424
SFTERDAV	8	Unmodified	_SFTERDAV_					0	0	0		PSKH2|p.G153E|1|0.21|ENSG00000147613|chr8:86064359-86064359|C/T|missense_variant;ENSG00000147613|ENST00000276616|PSKH2	PSKH2|p.G153E|1|0.21|ENSG00000147613|chr8:86064359-86064359|C/T|missense_variant	PSKH2|p.G153E|1|0.21|ENSG00000147613|chr8:86064359-86064359|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	462.13494873046875	2	462.724707	923.43486	-0.45506	-0.00021057	0.8607	0.00039827	0.40565	0.0001877	462.7248704006383	36.463	0.35615	36.463	36.287	36.644	0					9	6	2	0	0	0	0.86263	1	12249	12249		26.884	6.43	1	1666600			48020	15243	34863	35147	46944	46944					-0.029919688959580526
SFTFRQSL	8	Unmodified	_SFTFRQSL_					0	0	0			REV__nc|ENSG00000082175|P06401-4|PGR	REV__nc|ENSG00000082175|P06401-4|PGR	MULTI-SECPEP	A375_MHC_IP_R1	1	492.4774475097656	2	493.258717	984.50288	-0.27489	-0.00013559	0.42256	0.00020843	0.14767	7.284E-05	493.2587417319527	43.564	0.2553	43.564	43.451	43.706	0					5	4	2	0	0	0	0.94479	1	15144	15144		8.5933	0.68312	1	1199300	+		48021	16786	34864	35148	46945	46945					0.010009007547182591
SFTQAPLQLSP	11	Unmodified	_SFTQAPLQLSP_					0	0	0			REV__ENSG00000188786|ENST00000373036|MTF1	REV__ENSG00000188786|ENST00000373036|MTF1	MULTI-MSMS	A375_MHC_IP_R1	1	397.2806091308594	3	396.880156	1187.61864	-0.32422	-0.00012868	2.4371	0.00096723	2.1129	0.00083856	396.88148354439875	24.009	1.013	24.009	23.787	24.801	0					36	19	4	0	0	0	0.66366	1	6722	6722		11.065	0	1	10165000	+		48022	22114	34865	35149	46946	46946					0.03233379814901127
SFVEPPSTSL	10	Unmodified	_SFVEPPSTSL_					0	0	0			REV__ENSG00000169116|ENST00000307428|PARM1	REV__ENSG00000169116|ENST00000307428|PARM1	MULTI-SECPEP	A375_MHC_IP_R2	2	532.2132568359375	2	532.268947	1062.52334	-0.6996	-0.00037238	-1.0213	-0.00054362	-1.7209	-0.000916	532.267877930618	107.9	1.4292	108.65	108.2	109.63	0.75436					32	27	2	0	0	0	0.85226	1	40843	40843		20.454	13.164	1	1308100	+		48023	20908	34866	35150	46947	46947					-0.005419733761300449
SFVEPPSTSL	10	Unmodified	_SFVEPPSTSL_					0	0	0			REV__ENSG00000169116|ENST00000307428|PARM1	REV__ENSG00000169116|ENST00000307428|PARM1	MULTI-MATCH	A375_MHC_IP_R1	1		2	532.268947	1062.52334	-0.36008	-0.00019166	-0.36166	-0.0001925	-0.72173	-0.00038416	532.2685794786961	108.63	0.71054	108.63	108.05	108.76	0	-0.011456	0.00022474	NaN	19.257	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1231900	+		48024	20908	34866	35150							-0.005419733761300449
SFVGGFVV	8	Unmodified	_SFVGGFVV_					0	0	0		ENSG00000185156|ENST00000329805|MFSD6L	ENSG00000185156|ENST00000329805|MFSD6L	ENSG00000185156|ENST00000329805|MFSD6L	MULTI-MSMS	A375_MHC_IP_R1	1	406.6212463378906	2	406.221072	810.42759	-0.33209	-0.0001349	0.62024	0.00025196	0.28815	0.00011705	406.221301066566	64.1	0.55629	64.1	63.837	64.393	0					18	10	2	0	0	0	0.48378	1	23194	23194		49.669	0	1	2685200			48025	8646	34867	35151	46948	46948					0.01479343294283808
SFVGGFVV	8	Unmodified	_SFVGGFVV_					0	0	0		ENSG00000185156|ENST00000329805|MFSD6L	ENSG00000185156|ENST00000329805|MFSD6L	ENSG00000185156|ENST00000329805|MFSD6L	MULTI-MSMS	A375_MHC_IP_R2	2	406.6209411621094	2	406.221072	810.42759	0.064892	2.636E-05	-0.26866	-0.00010913	-0.20377	-8.2774E-05	406.22087309305385	63.272	0.71182	64.012	63.734	64.446	0.74022					19	13	2	0	0	0	0.6817	1	23976	23976		40.449	0	1	2765000			48026	8646	34867	35151	46949	46949					0.01479343294283808
SFVKVYNY	8	Unmodified	_SFVKVYNY_					0	0	0		ENSG00000131469|ENST00000253788|RPL27;RPL27|p.N78S|1|0.37|ENSG00000131469|chr17:43000084-43000084|A/G|missense_variant;ENST00000441321.1_1_2:120750895-120751159:-|nuORF	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-SECPEP	A375_MHC_IP_R1	1	510.66339111328125	2	510.263468	1018.51238	-0.3974	-0.00020278	0.043451	2.2171E-05	-0.35395	-0.00018061	510.2634591951813	57.237	0.562	57.237	56.956	57.518	0					18	10	2	0	0	0	0.64713	1	20551	20551		52.268	20.151	1	5881700			48027	4332	34868	35152	46950	46950					0.0038666904022193194
SFVKVYNY	8	Unmodified	_SFVKVYNY_					0	0	0		ENSG00000131469|ENST00000253788|RPL27;RPL27|p.N78S|1|0.37|ENSG00000131469|chr17:43000084-43000084|A/G|missense_variant;ENST00000441321.1_1_2:120750895-120751159:-|nuORF	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-SECPEP	A375_MHC_IP_R2	2	509.6894836425781	2	510.263468	1018.51238	-1.086	-0.00055413	0.40986	0.00020913	-0.67612	-0.000345	510.2636726412039	56.428	0.51036	57.178	56.898	57.408	0.75015					15	9	2	0	0	0	0.76996	1	21312	21312		43.858	9.7559	1	6081400			48028	4332	34868	35152	46951	46951					0.0038666904022193194
SFVRNPRWIKE	11	Unmodified	_SFVRNPRWIKE_					0	0	0			REV__ENSG00000197562|ENST00000248139|RAB40C	REV__ENSG00000197562|ENST00000248139|RAB40C	MULTI-SECPEP	A375_MHC_IP_R1	1	715.6044921875	2	716.39641	1430.77827	-0.56504	-0.00040479	-3.5314	-0.0025299	-4.0964	-0.0029346	716.3948665837817	98.725	0.50996	98.725	98.607	99.117	0					11	9	2	0	0	0	0.99238	1	36249	36249		6.6304	2.1015	1	2702500	+		48029	22298	34869	35153	46952	46952					0.08010932882712041
SFVSLHLKPS	10	Unmodified	_SFVSLHLKPS_					0	0	0		ENST00000483063.1_1_2:75196545-75196683:+|nuORF	ENST00000483063.1_1_2:75196545-75196683:+|nuORF	ENST00000483063.1_1_2:75196545-75196683:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	557.6637573242188	2	557.816399	1113.61824	-0.79643	-0.00044426	0.35065	0.0001956	-0.44577	-0.00024866	557.8165698066107	40.149	0.35532	40.924	40.727	41.082	0.77451					10	6	2	0	0	0	0.92957	1	14916	14916		6.2058	1.6769	1	1707800			48030	12536	34870	35154	46953	46953					0.06598004885699993
SFWDLITPT	9	Unmodified	_SFWDLITPT_					0	0	0			REV__ENSG00000181523|ENST00000326317|SGSH	REV__ENSG00000181523|ENST00000326317|SGSH	MULTI-SECPEP	A375_MHC_IP_R2	2	1079.2965087890625	1	1079.54079	1078.53351	0.21271	0.00022963	-3.4652	-0.0037408	-3.2525	-0.0035112	1080.5387294079471	117.61	1.1652	118.22	117.28	118.44	0.60909					34	22	2	0	0	0	0.76827	1	44610	44610		10.824	3.5347	1	68661000	+		48031	21654	34871	35155	46954	46954					-0.0026136565090837394
SFYCRRYCLPR	11	Unmodified	_SFYCRRYCLPR_					0	0	0			REV__KRTAP21-2|p.S80F|1|0.25|ENSG00000187026|chr21:30746964-30746964|G/A|missense_variant	REV__KRTAP21-2|p.S80F|1|0.25|ENSG00000187026|chr21:30746964-30746964|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	488.46942138671875	3	488.572674	1462.69619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.702	1	51.702	51.202	52.202	0								0	0	0	0.16309	1	18361	18361		2.6312	0.19645	1		+		48032	26874	34872	35156	46955	46955					-0.016646287922185365
SFYCRRYCLPR	11	Unmodified	_SFYCRRYCLPR_					0	0	0			REV__KRTAP21-2|p.S80F|1|0.25|ENSG00000187026|chr21:30746964-30746964|G/A|missense_variant	REV__KRTAP21-2|p.S80F|1|0.25|ENSG00000187026|chr21:30746964-30746964|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	488.4690246582031	3	488.572674	1462.69619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.036	1	51.79	51.29	52.29	0.75406								0	0	0	0.16269	1	19199	19199		4.7159	1.8726	1		+		48033	26874	34872	35156	46956	46956					-0.016646287922185365
SFYEHIITV	9	Unmodified	_SFYEHIITV_					0	0	0		ENSG00000198876|ENST00000361264|DCAF12	ENSG00000198876|ENST00000361264|DCAF12	ENSG00000198876|ENST00000361264|DCAF12	MULTI-MSMS	A375_MHC_IP_R1	1	554.19580078125	2	554.787307	1107.56006	-0.43635	-0.00024208	0.18605	0.00010322	-0.2503	-0.00013886	554.7872336460429	88.922	0.65995	88.922	88.663	89.323	0					21	12	2	0	0	0	0.091096	2	32658	32658;32685		52.268	19.483	1	4081000			48034	9357	34873	35157	46957;46958	46957					0.010583232404314913
SFYGCMTQI	9	Unmodified	_SFYGCMTQI_					0	0	0		ENSG00000178358|ENST00000317834|OR2D3	ENSG00000178358|ENST00000317834|OR2D3	ENSG00000178358|ENST00000317834|OR2D3	MSMS	A375_MHC_IP_R2	2	525.205078125	2	525.225171	1048.43579	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.119	1	83.858	83.358	84.358	0.73962								0	0	0	0.15283	1	31589	31589		16.942	1.0951	1				48035	8154	34874	35158	46959	46959					-0.08649213842909376
SFYGLREFQ	9	Unmodified	_SFYGLREFQ_					0	0	0			REV__nc|ENSG00000172053|P47897-2|QARS1	REV__nc|ENSG00000172053|P47897-2|QARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	573.7130126953125	2	573.782556	1145.55056	-0.26331	-0.00015108	0.6804	0.0003904	0.41709	0.00023932	574.2846233238171	75.967	0.25214	75.967	75.865	76.117	0					6	4	2	0	0	0	0.76187	1	27707	27707		3.9444	0	1	517510	+		48036	21118	34875	35159	46960	46960					-0.016394450450889053
SFYILRSC	8	Unmodified	_SFYILRSC_					0	0	0			REV__ENST00000472364.1_1_21:47976931-47978452:+|nuORF	REV__ENST00000472364.1_1_21:47976931-47978452:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	988.6392211914062	1	988.492064	987.484787	-0.008726	-8.6256E-06	-0.91924	-0.00090866	-0.92796	-0.00091728	988.4926708872008	120.37	0.70828	120.37	119.89	120.6	0					21	13	2	0	0	0	0.96266	1	44407	44407		16.942	8.349	1	28128000	+		48037	25137	34876	35160	46961	46961					-0.009455574916501064
SGAEVRIR	8	Unmodified	_SGAEVRIR_					0	0	0		nc|ENSG00000136153|Q8WWI1-3|LMO7;ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7;ENST00000482116.1_1_13:76423246-76430812:+|nuORF	nc|ENSG00000136153|Q8WWI1-3|LMO7	nc|ENSG00000136153|Q8WWI1-3|LMO7	MULTI-MSMS	A375_MHC_IP_R1	1	444.65631103515625	2	444.256508	886.498464	-0.01744	-7.748E-06	0.45468	0.000202	0.43724	0.00019425	444.2567795740528	96.299	1.8236	96.299	95.767	97.59	0					53	35	2	0	0	0	0.77842	1	35417	35417		0.69038	0	1	1673900			48038	4759	34877	35161	46962	46962					0.05067436331819408
SGAFGHLF	8	Unmodified	_SGAFGHLF_					0	0	0		nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3;chr16:89921431-89932571|440|11.67|0.7|4.06|+|ENST00000555810|TUBB3,TUBB3;TUBB3|p.G142Rfs*16|1|0.23|ENSG00000258947|chr16:89934867-89934868|-/G|frameshift_variant;TUBB3|p.R156Vfs*9|1|0.64|ENSG00000258947|chr16:89934916-89934916|G/-|frameshift_variant	nc|ENSG00000258947|Q13509-2|TUBB3	nc|ENSG00000258947|Q13509-2|TUBB3	MULTI-SECPEP	A375_MHC_IP_R1	1	418.6085510253906	2	418.208495	834.402438	0.10036	4.197E-05	-0.2547	-0.00010652	-0.15434	-6.4548E-05	418.2083143886842	76.958	0.86401	76.958	76.673	77.537	0					34	16	3	0	0	0	0.31137	1	28049	28049		59.795	27.49	1	9313900			48039	9924	34878	35162	46963	46963					-0.021387115082802666
SGAFGHLF	8	Unmodified	_SGAFGHLF_					0	0	0		nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3;chr16:89921431-89932571|440|11.67|0.7|4.06|+|ENST00000555810|TUBB3,TUBB3;TUBB3|p.G142Rfs*16|1|0.23|ENSG00000258947|chr16:89934867-89934868|-/G|frameshift_variant;TUBB3|p.R156Vfs*9|1|0.64|ENSG00000258947|chr16:89934916-89934916|G/-|frameshift_variant	nc|ENSG00000258947|Q13509-2|TUBB3	nc|ENSG00000258947|Q13509-2|TUBB3	MULTI-MSMS	A375_MHC_IP_R2	2	418.60845947265625	2	418.208495	834.402438	-0.045517	-1.9035E-05	0.075841	3.1717E-05	0.030324	1.2682E-05	418.20844275074165	76.058	0.76247	76.799	76.487	77.25	0.74052					32	14	3	0	0	0	0.16304	1	28827	28827		82.939	46.812	1	9094000			48040	9924	34878	35162	46964	46964					-0.021387115082802666
SGAGILRMV	9	Unmodified	_SGAGILRMV_					0	0	0		ENSG00000205302|ENST00000379516|SNX2;nc|ENSG00000205302|O60749-2|SNX2	ENSG00000205302|ENST00000379516|SNX2	ENSG00000205302|ENST00000379516|SNX2	MULTI-MSMS	A375_MHC_IP_R1	1	452.6581726074219	2	452.257662	902.500772	0.046009	2.0808E-05	0.83589	0.00037804	0.8819	0.00039884	452.25795174229074	71.942	0.40446	71.942	71.715	72.119	0					12	7	2	0	0	0	0.06083	1	26186	26186		60.074	23.947	1	2270900			48041	9506	34879	35163	46965	46965					0.0456214874525358
SGAGILRMV	9	Unmodified	_SGAGILRMV_					0	0	0		ENSG00000205302|ENST00000379516|SNX2;nc|ENSG00000205302|O60749-2|SNX2	ENSG00000205302|ENST00000379516|SNX2	ENSG00000205302|ENST00000379516|SNX2	MULTI-MATCH	A375_MHC_IP_R2	2		2	452.257662	902.500772	-0.34693	-0.0001569	0.52157	0.00023588	0.17464	7.898E-05	452.2577612194684	70.883	0.50412	71.618	71.302	71.806	0.73421	-0.16244	-0.00013116	NaN	60.074	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2438800			48042	9506	34879	35163							0.0456214874525358
SGAGILRMV	9	Oxidation (M)	_SGAGILRM(Oxidation (M))V_		SGAGILRM(1)V		SGAGILRM(46)V	0	0	1		ENSG00000205302|ENST00000379516|SNX2;nc|ENSG00000205302|O60749-2|SNX2	ENSG00000205302|ENST00000379516|SNX2	ENSG00000205302|ENST00000379516|SNX2	MULTI-SECPEP	A375_MHC_IP_R1	1	460.65478515625	2	460.25512	918.495686	-0.31291	-0.00014402	0.19387	8.9231E-05	-0.11904	-5.4789E-05	460.2550381392448	46.489	0.50414	46.489	46.245	46.749	0					16	9	2	0	0	0	0.16595	1	16335	16335		45.74	12.954	1	3438300			48043	9506	34879	35164	46966	46966		437			0.03317844882644749
SGAGILRMV	9	Oxidation (M)	_SGAGILRM(Oxidation (M))V_		SGAGILRM(1)V		SGAGILRM(40)V	0	0	1		ENSG00000205302|ENST00000379516|SNX2;nc|ENSG00000205302|O60749-2|SNX2	ENSG00000205302|ENST00000379516|SNX2	ENSG00000205302|ENST00000379516|SNX2	MULTI-MSMS	A375_MHC_IP_R2	2	460.6550598144531	2	460.25512	918.495686	-0.43996	-0.0002025	0.12994	5.9808E-05	-0.31002	-0.00014269	460.25505146319495	45.592	0.45471	46.358	46.048	46.503	0.76519					17	8	3	0	0	0	0.16945	1	17042	17042		40.239	11.158	1	3327800			48044	9506	34879	35164	46967	46967		437			0.03317844882644749
SGAIPVWL	8	Unmodified	_SGAIPVWL_					0	0	0			REV__ENST00000355451.7_1_7:44424176-44424434:-|nuORF	REV__ENST00000355451.7_1_7:44424176-44424434:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	421.6478271484375	2	421.742171	841.469789	-0.31127	-0.00013128	0.043966	1.8542E-05	-0.26731	-0.00011273	421.74215259637936	35.595	1.2194	36.358	35.829	37.048	0.76338					41	23	2	0	0	0	0.75805	1	12726	12726		18.135	7.9516	1	4614500	+		48045	23820	34880	35165	46968	46968					0.04271318702649296
SGAPGPCG	8	Unmodified	_SGAPGPCG_					0	0	0		nc|ENSG00000196588|Q969V6|MRTFA;ENSG00000196588|ENST00000355630|MRTFA	nc|ENSG00000196588|Q969V6|MRTFA	nc|ENSG00000196588|Q969V6|MRTFA	MULTI-SECPEP	A375_MHC_IP_R1	1	644.5399780273438	1	645.266087	644.25881	-0.77462	-0.00049983	1.2426	0.00080182	0.46801	0.00030199	645.2629723422388	142.83	1.5166	142.83	141.52	143.04	0					51	29	2	0	0	0	0.972	1	54708	54708		2.3027	0	1	735080			48046	9062	34881	35166	46969	46969					-0.07754881610867415
SGAVRVLL	8	Unmodified	_SGAVRVLL_					0	0	0		nc|ENSG00000158816|Q5TIE3-4|VWA5B1;nc|ENSG00000158816|Q5TIE3-5|VWA5B1;ENSG00000158816|ENST00000289815|VWA5B1;nc|ENSG00000158816|Q5TIE3|VWA5B1	nc|ENSG00000158816|Q5TIE3-4|VWA5B1	nc|ENSG00000158816|Q5TIE3-4|VWA5B1	MULTI-SECPEP	A375_MHC_IP_R1	1	408.1612243652344	2	407.760895	813.507237	-0.16544	-6.7459E-05	0.41147	0.00016778	0.24603	0.00010032	407.7609883997828	61.802	0.71445	61.802	61.534	62.249	0					25	13	3	0	0	0	0.84748	1	22277	22277		28.487	9.0478	1	5070900			48047	6334	34882	35167	46970	46970					0.09302409968267966
SGAVRVLL	8	Unmodified	_SGAVRVLL_					0	0	0		nc|ENSG00000158816|Q5TIE3-4|VWA5B1;nc|ENSG00000158816|Q5TIE3-5|VWA5B1;ENSG00000158816|ENST00000289815|VWA5B1;nc|ENSG00000158816|Q5TIE3|VWA5B1	nc|ENSG00000158816|Q5TIE3-4|VWA5B1	nc|ENSG00000158816|Q5TIE3-4|VWA5B1	MULTI-SECPEP	A375_MHC_IP_R2	2	408.16046142578125	2	407.760895	813.507237	-0.28522	-0.0001163	-0.04392	-1.7909E-05	-0.32914	-0.00013421	407.76084030053784	60.708	1.5703	61.453	60.551	62.121	0.74503					40	30	2	0	0	0	0.55372	1	22989	22989		57.471	6.6163	1	5242700			48048	6334	34882	35167	46971	46971					0.09302409968267966
SGAWGLPAAE	10	Unmodified	_SGAWGLPAAE_					0	0	0			REV__ENST00000568546.5_3_16:2029772-2030570:+|nuORF	REV__ENST00000568546.5_3_16:2029772-2030570:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	961.3623046875	1	958.462872	957.455596	-0.056981	-5.4614E-05	-0.20589	-0.00019734	-0.26287	-0.00025195	958.4626101279539	70.084	0.86498	70.818	70.437	71.302	0.73421					50	16	4	0	0	0	0.57505	1	26619	26619		22.736	1.1993	1	51613000	+		48049	26262	34883	35168	46972	46972					-0.024833785162968525
SGAWGLPAAE	10	Unmodified	_SGAWGLPAAE_					0	0	0			REV__ENST00000568546.5_3_16:2029772-2030570:+|nuORF	REV__ENST00000568546.5_3_16:2029772-2030570:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	958.462872	957.455596	0.1439	0.00013792	0.31292	0.00029992	0.45681	0.00043784	958.4630992966513	70.825	1.1241	70.825	70.392	71.516	0	0.0033571	0.00023063	NaN	22.736	58	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55981000	+		48050	26262	34883	35168							-0.024833785162968525
SGAWGLPAAE	10	Unmodified	_SGAWGLPAAE_					0	0	0			REV__ENST00000568546.5_3_16:2029772-2030570:+|nuORF	REV__ENST00000568546.5_3_16:2029772-2030570:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	958.462872	957.455596	-0.056981	-5.4614E-05	-0.20589	-0.00019734	-0.26287	-0.00025195	958.4626101279539	70.084	0.86498	70.818	70.437	71.302	0.73421	-0.0033571	-0.00026663	NaN	22.736	50	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51613000	+		48051	26262	34883	35168							-0.024833785162968525
SGCACGCGCE	10	Unmodified	_SGCACGCGCE_					0	0	0		ENST00000252445.7_1_19:11664367-11664523:-|nuORF	ENST00000252445.7_1_19:11664367-11664523:-|nuORF	ENST00000252445.7_1_19:11664367-11664523:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	889.2081909179688	1	889.230706	888.223429	-0.092534	-8.2284E-05	-0.88575	-0.00078764	-0.97829	-0.00086992	889.2323885192494	21.737	5.685	21.737	19.268	24.953	0					268	111	3	0	0	0	0.95034	1	7154	7154		0.40072	0.40072	1	2590900			48052	10209	34884	35169	46973	46973					-0.2251537151686307
SGDCCCCSQED	11	Unmodified	_SGDCCCCSQED_					0	0	0		ENST00000404569.5_3_22:39905450-39907313:+|nuORF	ENST00000404569.5_3_22:39905450-39907313:+|nuORF	ENST00000404569.5_3_22:39905450-39907313:+|nuORF	MSMS	A375_MHC_IP_R2	2	575.1312866210938	2	575.151216	1148.28788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.749	1	73.484	72.984	73.984	0.73541								0	0	0	0.1636	1	27612	27612		0	0	1				48053	11584	34885	35170	46974	46974					-0.28033261221389694
SGDEYSKGFL	10	Unmodified	_SGDEYSKGFL_					0	0	0		ZNF789|p.R152K|1|0.32|ENSG00000198556|chr7:99486665-99486665|G/A|missense_variant	ZNF789|p.R152K|1|0.32|ENSG00000198556|chr7:99486665-99486665|G/A|missense_variant	ZNF789|p.R152K|1|0.32|ENSG00000198556|chr7:99486665-99486665|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	552.15576171875	2	551.756204	1101.49785	-1.1889	-0.00065597	0.61395	0.00033875	-0.57493	-0.00031722	551.7567553085922	52.357	0.5563	53.109	52.78	53.336	0.75225					16	10	2	0	0	0	0.87043	1	19756	19756		10.8	2.8894	1	4436900			48054	30243	34886	35171	46975	46975					-0.0488344789855546
SGDGEWSGASS	11	Unmodified	_SGDGEWSGASS_					0	0	0		nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;PTPRZ1|p.N1301Tfs*23|1|0.25|ENSG00000106278|chr7:122012947-122012947|A/-|frameshift_variant	nc|ENSG00000106278|P23471-2|PTPRZ1	nc|ENSG00000106278|P23471-2|PTPRZ1	MULTI-MSMS	A375_MHC_IP_R1	1	520.6013793945312	2	520.201793	1038.38903	-0.60047	-0.00031237	-0.26616	-0.00013846	-0.86663	-0.00045082	520.2016167528972	37.035	0.65701	37.035	36.644	37.301	0					30	12	3	0	0	0	0.73078	1	12375	12375		8.1555	0.54658	1	13453000			48055	2679	34887	35172	46976	46976					-0.12862658868834842
SGDGEWSGASS	11	Unmodified	_SGDGEWSGASS_					0	0	0		nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;PTPRZ1|p.N1301Tfs*23|1|0.25|ENSG00000106278|chr7:122012947-122012947|A/-|frameshift_variant	nc|ENSG00000106278|P23471-2|PTPRZ1	nc|ENSG00000106278|P23471-2|PTPRZ1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	520.201793	1038.38903	-0.60047	-0.00031237	-0.26616	-0.00013846	-0.86663	-0.00045082	520.2016167528972	37.035	0.65701	37.035	36.644	37.301	0	-0.042229	8.8656E-05	NaN	8.1555	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13453000			48056	2679	34887	35172							-0.12862658868834842
SGDSFDESTQG	11	Unmodified	_SGDSFDESTQG_					0	0	0			REV__ENST00000436612.5_1_17:38990654-38990717:+|nuORF	REV__ENST00000436612.5_1_17:38990654-38990717:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	565.6174926757812	2	565.21764	1128.42073	-0.32505	-0.00018372	0.24458	0.00013824	-0.080468	-4.5482E-05	565.2179717580684	28.501	0.40609	28.501	28.339	28.745	0					19	7	3	0	0	0	0.45155	1	8798	8798		34.932	2.6266	1	9221500	+		48057	24765	34888	35173	46977	46977					-0.13834710905553038
SGDSFDESTQG	11	Unmodified	_SGDSFDESTQG_					0	0	0			REV__ENST00000436612.5_1_17:38990654-38990717:+|nuORF	REV__ENST00000436612.5_1_17:38990654-38990717:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	565.6172485351562	2	565.21764	1128.42073	-0.51073	-0.00028868	-0.33874	-0.00019146	-0.84947	-0.00048014	565.2177695263836	27.924	0.40635	28.603	28.401	28.808	0.67857					20	7	4	0	0	0	0.76597	1	9589	9589		34.932	9.9411	1	6865900	+		48058	24765	34888	35173	46978	46978					-0.13834710905553038
SGDSPLNFTG	10	Unmodified	_SGDSPLNFTG_					0	0	0			REV__nc|ENSG00000204463|P46379-5|BAG6	REV__nc|ENSG00000204463|P46379-5|BAG6	MULTI-MSMS	A375_MHC_IP_R1	1	498.6627197265625	2	497.727446	993.44034	-0.56755	-0.00028249	0.76837	0.00038244	0.20081	9.9949E-05	497.7276592877991	52.926	0.50597	52.926	52.643	53.148	0					19	9	3	0	0	0	0.69833	1	18757	18757		13.042	1.928	1	2571700	+		48059	22516	34889	35174	46979	46979					-0.05664290104130032
SGDTLPRL	8	Unmodified	_SGDTLPRL_					0	0	0		ENSG00000187231|ENST00000428443|SESTD1;ENST00000446758.5_1_2:179974628-179981501:-|nuORF	ENSG00000187231|ENST00000428443|SESTD1	ENSG00000187231|ENST00000428443|SESTD1	MULTI-SECPEP	A375_MHC_IP_R1	1	430.1375427246094	2	429.737617	857.460681	0.077796	3.3432E-05	-0.3472	-0.00014921	-0.26941	-0.00011577	429.7374635213148	49.852	0.71389	49.852	49.387	50.101	0					25	13	3	0	0	0	0.22517	1	17601	17601		69.105	16.837	1	3362200			48060	8813	34890	35175	46980	46980					0.026249253463333844
SGDTLPRL	8	Unmodified	_SGDTLPRL_					0	0	0		ENSG00000187231|ENST00000428443|SESTD1;ENST00000446758.5_1_2:179974628-179981501:-|nuORF	ENSG00000187231|ENST00000428443|SESTD1	ENSG00000187231|ENST00000428443|SESTD1	MULTI-SECPEP	A375_MHC_IP_R2	2	430.1373596191406	2	429.737617	857.460681	-0.34888	-0.00014993	-0.24105	-0.00010359	-0.58993	-0.00025352	429.7375589790162	48.867	0.66279	49.624	49.332	49.995	0.75737					26	12	3	0	0	0	0.1889	1	18364	18364		74.929	13.572	1	4518400			48061	8813	34890	35175	46981	46981					0.026249253463333844
SGDVFCKMKL	10	Unmodified	_SGDVFCKMKL_					0	0	0		ENST00000381440.4_1_16:19130415-19130568:+|nuORF	ENST00000381440.4_1_16:19130415-19130568:+|nuORF	ENST00000381440.4_1_16:19130415-19130568:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	376.60040283203125	3	376.524439	1126.55149	0.3571	0.00013446	-0.74962	-0.00028225	-0.39252	-0.00014779	376.52393664223644	28.415	0.6074	28.415	28.188	28.795	0					15	11	2	0	0	0	0.78945	1	8772	8772		16.566	4.3911	1	982210			48062	11375	34891	35176	46982	46982					-0.0067268999205225555
SGEFDKGDFWE	11	Unmodified	_SGEFDKGDFWE_					0	0	0			REV__EWSR1|p.Q436E|1|0.11|ENSG00000182944|chr22:29297838-29297838|C/G|missense_variant	REV__EWSR1|p.Q436E|1|0.11|ENSG00000182944|chr22:29297838-29297838|C/G|missense_variant	MSMS	A375_MHC_IP_R1	1	658.73486328125	2	658.775125	1315.5357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.48	1	73.48	72.98	73.98	0								0	0	0	0.16124	1	26755	26755		12.241	0	1		+		48063	26597	34892	35177	46983	46983					-0.1094498170375573
SGEGPTLANV	10	Unmodified	_SGEGPTLANV_					0	0	0		nc|ENSG00000068078|P22607-3|FGFR3;ENSG00000068078|ENST00000440486|FGFR3;nc|ENSG00000068078|P22607-2|FGFR3;nc|ENSG00000068078|P22607-4|FGFR3	nc|ENSG00000068078|P22607-3|FGFR3	nc|ENSG00000068078|P22607-3|FGFR3	MSMS	A375_MHC_IP_R1	1	472.6695251464844	2	472.737814	943.461075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.334	1	45.334	44.834	45.834	0								0	0	0	0.15265	1	15858	15858		12.241	0.60036	1				48064	1451	34893	35178	46984	46984					-0.012916997244701633
SGELIEVQGI	10	Unmodified	_SGELIEVQGI_					0	0	0			REV__ENSG00000124587|ENST00000304611|PEX6	REV__ENSG00000124587|ENST00000304611|PEX6	MULTI-SECPEP	A375_MHC_IP_R1	1	523.213134765625	2	522.782222	1043.54989	-0.37212	-0.00019454	-1.4785	-0.00077296	-1.8507	-0.00096749	522.7816206670515	56.391	0.50678	56.391	56.143	56.65	0					14	9	2	0	0	0	0.68963	1	20144	20144		28.495	0	1	2050600	+		48065	18315	34894	35179	46985	46985					0.029857155152058112
SGELLGSLCEL	11	Unmodified	_SGELLGSLCEL_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	A375_MHC_IP_R1	1	560.6747436523438	2	560.781364	1119.54818	-0.35584	-0.00019955	-2.9138	-0.001634	-3.2696	-0.0018335	561.2823063654176	62.61	0.76899	62.61	62.3	63.069	0					33	14	4	0	0	0	0.84606	1	22630	22630		21.537	8.4945	1	4166800	+		48066	17711	34895	35180	46986	46986					-0.006816615650677704
SGETGYVPPAY	11	Unmodified	_SGETGYVPPAY_					0	0	0		nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-4|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-3|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-2|NCKIPSD;ENSG00000213672|ENST00000294129|NCKIPSD	nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD	nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD	MULTI-MSMS	A375_MHC_IP_R1	1	570.6796264648438	2	570.764029	1139.5135	-0.197	-0.00011244	-1.2647	-0.00072186	-1.4617	-0.00083431	570.7641131268877	56.02	1.9327	56.02	55.381	57.313	0					94	37	4	0	0	0	0.72565	1	20435	20435		13.042	0	1	5842800			48067	9576	34896	35181	46987	46987					-0.05067161381521146
SGEVWRQASI	10	Unmodified	_SGEVWRQASI_					0	0	0		ENST00000465153.1_1_3:179128349-179131337:-|nuORF	ENST00000465153.1_1_3:179128349-179131337:-|nuORF	ENST00000465153.1_1_3:179128349-179131337:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	567.1907958984375	2	566.790912	1131.56727	-0.43062	-0.00024407	0.30014	0.00017012	-0.13048	-7.3953E-05	566.7910010576805	58.401	0.66119	58.401	58.024	58.685	0					35	12	4	0	0	0	0.70793	1	20952	20952		8.7454	0	1	20373000			48068	12235	34897	35182	46988	46988					0.006750558408384677
SGEVWRQASI	10	Unmodified	_SGEVWRQASI_					0	0	0		ENST00000465153.1_1_3:179128349-179131337:-|nuORF	ENST00000465153.1_1_3:179128349-179131337:-|nuORF	ENST00000465153.1_1_3:179128349-179131337:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	566.790912	1131.56727	-0.43062	-0.00024407	0.30014	0.00017012	-0.13048	-7.3953E-05	566.7910010576805	58.401	0.66119	58.401	58.024	58.685	0	-0.00011597	0.00023702	NaN	8.7454	35	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20373000			48069	12235	34897	35182							0.006750558408384677
SGEVWRQASI	10	Unmodified	_SGEVWRQASI_					0	0	0		ENST00000465153.1_1_3:179128349-179131337:-|nuORF	ENST00000465153.1_1_3:179128349-179131337:-|nuORF	ENST00000465153.1_1_3:179128349-179131337:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	566.790912	1131.56727	-0.70469	-0.00039941	0.0096298	5.4581E-06	-0.69506	-0.00039396	566.7908026962789	57.652	0.71118	58.401	57.968	58.679	0.74894	0.00011597	-9.2305E-05	NaN	8.7454	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20603000			48070	12235	34897	35182							0.006750558408384677
SGFNSLLQDW	10	Unmodified	_SGFNSLLQDW_					0	0	0			REV__ENSG00000255587|ENST00000612677|RAB44	REV__ENSG00000255587|ENST00000612677|RAB44	MSMS	A375_MHC_IP_R2	2	583.707275390625	2	583.77747	1165.54039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.063	1	67.799	67.299	68.299	0.73631								0	0	0	0.14622	1	25406	25406		24.991	5.734	1		+		48071	22878	34898	35183	46989	46989					-0.03576052770335991
SGFQITSV	8	Unmodified	_SGFQITSV_					0	0	0		ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-4|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	MULTI-MSMS	A375_MHC_IP_R2	2	839.1629028320312	1	838.430509	837.423233	-0.70877	-0.00059425	-0.59342	-0.00049754	-1.3022	-0.0010918	838.4300013235996	80.028	0.50517	80.773	80.556	81.062	0.74474					14	9	2	0	0	0	0.16328	1	30379	30379		82.529	4.545	1	4410200			48072	2394	34899	35184	46990	46990					-0.0019816591927792615
SGGCQAHA	8	Unmodified	_SGGCQAHA_					0	0	0			REV__nc|ENSG00000285053|Q15813-2|TBCE	REV__nc|ENSG00000285053|Q15813-2|TBCE	MULTI-SECPEP	A375_MHC_IP_R1	1	729.6892700195312	1	730.293698	729.286422	-0.90842	-0.00066341	-1.1635	-0.00084971	-2.0719	-0.0015131	730.2927719488728	144.74	0.17188	144.74	144.65	144.82	0					5	3	2	0	0	0	0.972	1	55504	55504		0	0	1	497680	+		48073	27553	34900	35185	46991	46991					-0.08904978350653892
SGGDRLDCVK	10	Unmodified	_SGGDRLDCVK_					0	0	0		nc|ENSG00000151892|P56159-2|GFRA1;ENSG00000151892|ENST00000355422|GFRA1	nc|ENSG00000151892|P56159-2|GFRA1	nc|ENSG00000151892|P56159-2|GFRA1	MULTI-MSMS	A375_MHC_IP_R1	1	525.2050170898438	2	525.255848	1048.49714	-0.060687	-3.1876E-05	1.4848	0.0007799	1.4241	0.00074803	525.2565126975502	44.626	1.4753	44.626	43.859	45.334	0					85	28	4	0	0	0	0.11665	2	15476	15476;15491		60.074	25.672	1	23011000			48074	5932	34901	35186	46992;46993	46992					-0.025165658192918272
SGGDRLDCVK	10	Unmodified	_SGGDRLDCVK_					0	0	0		nc|ENSG00000151892|P56159-2|GFRA1;ENSG00000151892|ENST00000355422|GFRA1	nc|ENSG00000151892|P56159-2|GFRA1	nc|ENSG00000151892|P56159-2|GFRA1	MULTI-MSMS	A375_MHC_IP_R2	2	525.6533813476562	2	525.255848	1048.49714	-0.29736	-0.00015619	1.6811	0.00088299	1.3837	0.0007268	525.2566885648762	43.831	1.9228	44.601	43.112	45.035	0.7691					67	37	3	0	0	0	0.15514	1	16228	16228		53.833	11.738	1	29068000			48075	5932	34901	35186	46994	46994					-0.025165658192918272
SGGELWDADEG	11	Unmodified	_SGGELWDADEG_					0	0	0			REV__ENSG00000188827|ENST00000294008|SLX4	REV__ENSG00000188827|ENST00000294008|SLX4	MULTI-MSMS	A375_MHC_IP_R1	1	568.1478271484375	2	568.23055	1134.44655	-0.7657	-0.00043509	0.0023	1.3069E-06	-0.7634	-0.00043379	568.2305447402806	29.478	0.89762	29.478	29.252	30.15	0					42	17	4	0	0	0	0.60747	1	9148	9148		22.736	10.496	1	131610000	+		48076	22118	34902	35187	46995	46995					-0.11529816663301062
SGGGGGGCG	9	Unmodified	_SGGGGGGCG_					0	0	0			REV__ENSG00000156017|ENST00000376834|CARNMT1	REV__ENSG00000156017|ENST00000376834|CARNMT1	MULTI-MSMS	A375_MHC_IP_R1	1	609.2213745117188	1	608.2093	607.202024	-0.50365	-0.00030632	-1.3802	-0.00083943	-1.8838	-0.0011458	608.2103172581616	30.237	3.6846	30.237	29.607	33.291	0					130	72	2	0	0	0	0.77827	1	10561	10561		0	0	1	5595600	+		48077	19957	34903	35188	46996	46996					-0.11728929167406932
SGGGGGGCG	9	Unmodified	_SGGGGGGCG_					0	0	0			REV__ENSG00000156017|ENST00000376834|CARNMT1	REV__ENSG00000156017|ENST00000376834|CARNMT1	MULTI-MSMS	A375_MHC_IP_R2	2	608.1982421875	1	608.2093	607.202024	-0.40732	-0.00024774	-2.1156	-0.0012867	-2.5229	-0.0015345	608.2099454098899	131.41	1.6259	131.6	130.88	132.51	0.18953					46	31	2	0	0	0	0.77827	1	51868	51868		0	0	1	2195700	+		48078	19957	34903	35188	46997	46997					-0.11728929167406932
SGGGGGGCG	9	Unmodified	_SGGGGGGCG_					0	0	0			REV__ENSG00000156017|ENST00000376834|CARNMT1	REV__ENSG00000156017|ENST00000376834|CARNMT1	MULTI-SECPEP	A375_MHC_IP_R2	2	608.6852416992188	1	608.2093	607.202024	-0.22619	-0.00013757	-1.9605	-0.0011924	-2.1867	-0.00133	608.2103855812902	114.16	1.6724	114.87	113.77	115.44	0.70985					43	32	2	0	0	0	0.81896	1	42948	42948		0	0	1	2625000	+		48079	19957	34903	35188	46998	46998					-0.11728929167406932
SGGGGGGCG	9	Unmodified	_SGGGGGGCG_					0	0	0			REV__ENSG00000156017|ENST00000376834|CARNMT1	REV__ENSG00000156017|ENST00000376834|CARNMT1	MULTI-SECPEP	A375_MHC_IP_R2	2	608.6829223632812	1	608.2093	607.202024	-0.40732	-0.00024774	-2.1156	-0.0012867	-2.5229	-0.0015345	608.2099454098899	131.41	1.6259	131.6	130.88	132.51	0.18953					46	31	2	0	0	0	0.81896	1	51999	51999		0	0	1	2195700	+		48080	19957	34903	35188	46999	46999					-0.11728929167406932
SGGGGGGH	8	Unmodified	_SGGGGGGH_					0	0	0		ENSG00000167768|ENST00000252244|KRT1;CON__P04264	ENSG00000167768|ENST00000252244|KRT1;REV__ENSG00000205808|ENST00000381883|PLPP6	REV__ENSG00000205808|ENST00000381883|PLPP6	MULTI-SECPEP	A375_MHC_IP_R2	2	585.1582641601562	1	585.237564	584.230287	-0.32556	-0.00019053	1.8782	0.0010992	1.5526	0.00090864	585.2431914188021	46.827	0.25246	47.589	47.412	47.664	0.76128					5	4	2	0	0	0	0.972	1	17554	17554		0.69038	0	1	599490		+	48081	22585;590	34904	35189	47000	47000					-0.07845863195814218
SGGGGGSHN	9	Unmodified	_SGGGGGSHN_					0	0	0			REV__nc|ENSG00000162664|Q5BKZ1-2|ZNF326	REV__nc|ENSG00000162664|Q5BKZ1-2|ZNF326	MULTI-MSMS	A375_MHC_IP_R1	1	729.6883544921875	1	729.291056	728.283779	-0.91026	-0.00066384	-0.041305	-3.0123E-05	-0.95156	-0.00069397	729.2908423316178	144.27	0.5643	144.27	143.78	144.35	0					17	11	2	0	0	0	0.77827	2	55270	55270;55304		0	0	1	1600900	+		48082	20287	34905	35190	47001;47002	47001					-0.09123110483960772
SGGGGGSHN	9	Unmodified	_SGGGGGSHN_					0	0	0			REV__nc|ENSG00000162664|Q5BKZ1-2|ZNF326	REV__nc|ENSG00000162664|Q5BKZ1-2|ZNF326	MULTI-SECPEP	A375_MHC_IP_R1	1	728.7116088867188	1	729.291056	728.283779	-0.91026	-0.00066384	-0.041305	-3.0123E-05	-0.95156	-0.00069397	729.2908423316178	144.27	0.5643	144.27	143.78	144.35	0					17	11	2	0	0	0	0.81896	1	55176	55176		0	0	1	1600900	+		48083	20287	34905	35190	47003	47003					-0.09123110483960772
SGGGGGSHN	9	Unmodified	_SGGGGGSHN_					0	0	0			REV__nc|ENSG00000162664|Q5BKZ1-2|ZNF326	REV__nc|ENSG00000162664|Q5BKZ1-2|ZNF326	MULTI-MSMS	A375_MHC_IP_R2	2	729.635986328125	1	729.291056	728.283779	-0.61255	-0.00044672	-0.47811	-0.00034868	-1.0907	-0.00079541	729.2906433946881	144.32	0.53014	144.35	143.84	144.37	0.024414					16	10	2	0	0	0	0.77827	1	56349	56349		0	0	1	1011900	+		48084	20287	34905	35190	47004	47004					-0.09123110483960772
SGGKRAALGGV	11	Unmodified	_SGGKRAALGGV_					0	0	0		ENST00000327470.4_1_11:22647115-22647214:-|nuORF	ENST00000327470.4_1_11:22647115-22647214:-|nuORF	ENST00000327470.4_1_11:22647115-22647214:-|nuORF	MSMS	A375_MHC_IP_R2	2	486.6822814941406	2	486.78289	971.551228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.52	1	140.57	140.07	141.07	0.04216								0	0	0	0.16249	1	55006	55006		5.7319	1.4026	1				48085	10741	34906	35191	47005	47005					0.06431394394621748
SGGPRPRP	8	Unmodified	_SGGPRPRP_					0	0	0			REV__ENST00000505732.5_1_9:15186859-15307321:-|nuORF	REV__ENST00000505732.5_1_9:15186859-15307321:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	412.6304016113281	2	412.230294	822.446034	0.045511	1.8761E-05	-0.054074	-2.2291E-05	-0.0085622	-3.5296E-06	412.23021618371024	103.93	5.3908	104.69	102.92	108.31	0.76428					192	105	3	0	0	0	0.7779	1	39014	39014		2.5775	0	1	18640000	+		48086	25539	34907	35192	47006	47006					0.02770897988852994
SGGYPKQVTL	10	Unmodified	_SGGYPKQVTL_					0	0	0			REV__ENSG00000171940|ENST00000371471|ZNF217	REV__ENSG00000171940|ENST00000371471|ZNF217	MULTI-SECPEP	A375_MHC_IP_R1	1	525.6555786132812	2	525.284931	1048.55531	0.056823	2.9848E-05	-1.03	-0.00054105	-0.9732	-0.00051121	525.2841044441016	44.735	0.50605	44.735	44.575	45.081	0					15	9	3	0	0	0	0.87163	1	15571	15571		9.3831	3.1773	1	1411600	+		48087	21111	34908	35193	47007	47007					0.03297439097673305
SGHACEAGPR	10	Unmodified	_SGHACEAGPR_					0	0	0			REV__ENST00000517951.5_1_5:156822576-156936463:-|nuORF	REV__ENST00000517951.5_1_5:156822576-156936463:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	493.1771240234375	2	492.719433	983.424312	-0.074319	-3.6619E-05	-0.29932	-0.00014748	-0.37364	-0.0001841	492.7194761008276	44.378	0.61521	44.378	44.061	44.676	0					16	11	2	0	0	0	0.62155	1	15524	15524		19.257	9.1831	1	1437700	+		48088	18821	34909	35194	47008	47008					-0.06806274822031355
SGHELYFSV	9	Unmodified	_SGHELYFSV_					0	0	0		MUC16|p.S10118F|1|0.35|ENSG00000181143|chr19:8946417-8946417|G/A|missense_variant	MUC16|p.S10118F|1|0.35|ENSG00000181143|chr19:8946417-8946417|G/A|missense_variant	MUC16|p.S10118F|1|0.35|ENSG00000181143|chr19:8946417-8946417|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	519.6664428710938	2	519.748182	1037.48181	-0.46299	-0.00024064	1.3697	0.00071192	0.90675	0.00047128	519.7488365074623	50.94	0.76001	50.94	50.613	51.373	0					30	14	3	0	0	0	0.6898	1	18208	18208		7.9102	0.62092	1	4994900			48089	14419	34910	35195	47009	47009					-0.03543109344809636
SGHHQHYYY	9	Unmodified	_SGHHQHYYY_					0	0	0		nc|ENSG00000064651|P55011-3|SLC12A2;ENSG00000064651|ENST00000262461|SLC12A2	nc|ENSG00000064651|P55011-3|SLC12A2	nc|ENSG00000064651|P55011-3|SLC12A2	MULTI-MSMS	A375_MHC_IP_R2	2	596.651123046875	2	596.251954	1190.48936	-0.61513	-0.00036678	-1.6807	-0.0010021	-2.2959	-0.0013689	596.2509824158606	40.13	0.66007	40.905	40.422	41.082	0.77451					21	12	2	0	0	0	0.46038	1	14865	14865		21.747	21.747	1	2686300			48090	1355	34911	35196	47010	47010					-0.09826957024529293
SGHHQHYYY	9	Unmodified	_SGHHQHYYY_					0	0	0		nc|ENSG00000064651|P55011-3|SLC12A2;ENSG00000064651|ENST00000262461|SLC12A2	nc|ENSG00000064651|P55011-3|SLC12A2	nc|ENSG00000064651|P55011-3|SLC12A2	MULTI-SECPEP	A375_MHC_IP_R2	2	596.1717529296875	2	596.251954	1190.48936	-0.74667	-0.0004452	-1.2457	-0.00074273	-1.9923	-0.0011879	596.250708401051	37.836	0.56455	38.611	38.432	38.997	0.77451					12	10	2	0	0	0	0.47368	1	13859	13859		34.102	6.4736	1	2354800			48091	1355	34911	35196	47011	47011					-0.09826957024529293
SGHNLVVALF	10	Unmodified	_SGHNLVVALF_					0	0	0			REV__chr7:110963565-111329394|166|17.01|0.37|5.5|-|1|TE_info:L1MC4,L1MC4_dup10963,L1,LINE,donor,+,111329394,111330673|IMMP2L,None|15	REV__chr7:110963565-111329394|166|17.01|0.37|5.5|-|1|TE_info:L1MC4,L1MC4_dup10963,L1,LINE,donor,+,111329394,111330673|IMMP2L,None|15	MULTI-SECPEP	A375_MHC_IP_R2	2	353.2657775878906	3	352.86607	1055.57638	-0.44174	-0.00015587	0.013675	4.8256E-06	-0.42806	-0.00015105	352.8660800248273	34.962	0.50499	35.725	35.525	36.03	0.76338					15	9	2	0	0	0	0.88918	1	12634	12634		11.518	3.9089	1	3618600	+		48092	15771	34912	35197	47012	47012					0.050814491971550524
SGIIIVQLKFD	11	Unmodified	_SGIIIVQLKFD_					0	0	0			REV__nc|ENSG00000206418|Q6IQ22|RAB12	REV__nc|ENSG00000206418|Q6IQ22|RAB12	MSMS	A375_MHC_IP_R1	1	616.8448486328125	2	616.866089	1231.71762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.25	1	113.25	112.75	113.75	0								0	0	0	0.16124	1	41512	41512		12.241	2.8575	1		+		48093	22594	34913	35198	47013	47013					0.11103402779804128
SGIIRRNF	8	Unmodified	_SGIIRRNF_					0	0	0			REV__nc|ENSG00000133138|Q0IIM8-2|TBC1D8B	REV__nc|ENSG00000133138|Q0IIM8-2|TBC1D8B	MULTI-SECPEP	A375_MHC_IP_R1	1	482.1799621582031	2	481.780151	961.545748	-0.43967	-0.00021182	0.084847	4.0878E-05	-0.35482	-0.00017095	481.78009366125946	27.443	0.40376	27.443	27.28	27.684	0					11	7	2	0	0	0	0.91495	1	8352	8352		18.135	0	1	2411200	+		48094	27228	34914	35199	47014	47014					0.06343715602793054
SGISLVSF	8	Unmodified	_SGISLVSF_					0	0	0		ENSG00000157985|ENST00000304032|AGAP1	ENSG00000157985|ENST00000304032|AGAP1	ENSG00000157985|ENST00000304032|AGAP1	MULTI-MSMS	A375_MHC_IP_R1	1	405.6240234375	2	405.223811	808.433069	-0.39766	-0.00016114	0.4472	0.00018122	0.049538	2.0074E-05	405.22397285644155	55.304	0.5086	55.304	55.075	55.584	0					14	9	2	0	0	0	0.28202	1	19807	19807		60.39	0	1	2370000			48095	6279	34915	35200	47015	47015					0.021190220860944464
SGKEARLMCVK	11	Unmodified	_SGKEARLMCVK_					0	0	0			REV__ENST00000301887.8_1_11:64756061-64756229:-|nuORF	REV__ENST00000301887.8_1_11:64756061-64756229:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	611.7561645507812	2	611.32575	1220.63695	-0.44396	-0.0002714	-0.072373	-4.4243E-05	-0.51633	-0.00031565	611.3255603736471	129.12	1.121	129.12	128.68	129.8	0					51	21	3	0	0	0	0.7362	1	49762	49762		2.9952	2.9952	1	23562000	+		48096	23429	34916	35201	47016	47016					0.03545475193573111
SGKGGCGK	8	Unmodified	_SGKGGCGK_					0	0	0		ENSG00000127311|ENST00000247815|HELB;nc|ENSG00000127311|Q8NG08-2|HELB	ENSG00000127311|ENST00000247815|HELB	ENSG00000127311|ENST00000247815|HELB	MULTI-SECPEP	A375_MHC_IP_R1	1	693.2238159179688	1	693.334835	692.327559	-0.9081	-0.00062962	1.6626	0.0011528	0.75454	0.00052315	693.3356390912271	135.9	0.3064	135.9	135.69	136	0					6	5	2	0	0	0	0.972	1	52311	52311		0	0	1	756730			48097	4082	34917	35202	47017	47017					-0.03091217311168748
SGKKKKKKKRL	11	Unmodified	_SGKKKKKKKRL_					0	0	0		ENST00000244745.3_2_6:21594329-21594497:+|nuORF	ENST00000244745.3_2_6:21594329-21594497:+|nuORF	ENST00000244745.3_2_6:21594329-21594497:+|nuORF	MSMS	A375_MHC_IP_R1	1	664.9732055664062	2	664.964263	1327.91397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.97	1	101.97	101.47	102.47	0								0	0	0	0.1636	1	37470	37470		0	0	1				48098	10179	34918	35203	47018	47018					0.26313252464206016
SGKLASKHLY	10	Unmodified	_SGKLASKHLY_					0	0	0		ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	MULTI-SECPEP	A375_MHC_IP_R2	2	552.7138671875	2	552.314023	1102.61349	-1.1661	-0.00064403	1.2687	0.00070071	0.10264	5.6687E-05	552.3146224169071	52.243	0.30289	52.995	52.831	53.134	0.75225					9	5	2	0	0	0	0.77204	1	19731	19731		21.537	0	1	1675200			48099	7874	34919	35204	47019	47019					0.06629120742968553
SGKLQKDRLI	10	Unmodified	_SGKLQKDRLI_					0	0	0			REV__ENSG00000198597|ENST00000355537|ZNF536	REV__ENSG00000198597|ENST00000355537|ZNF536	MSMS	A375_MHC_IP_R1	1	386.6217346191406	3	386.571545	1156.69281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.008	1	35.008	34.508	35.508	0								0	0	0	0.15207	1	11602	11602		8.4443	0	1		+		48100	22387	34920	35205	47020	47020					0.12072767697077325
SGKNKAAL	8	Unmodified	_SGKNKAAL_					0	0	0		nc|ENSG00000205560|Q92523-2|CPT1B;nc|ENSG00000205560|Q92523-3|CPT1B;ENSG00000205560|ENST00000312108|CPT1B	nc|ENSG00000205560|Q92523-2|CPT1B	nc|ENSG00000205560|Q92523-2|CPT1B	MULTI-MSMS	A375_MHC_IP_R2	2	395.2734375	2	394.734877	787.455202	-0.33042	-0.00013043	0.3998	0.00015782	0.069384	2.7388E-05	394.73494661236805	35.784	0.407	36.548	36.283	36.69	0.76338					12	7	2	0	0	0	0.76654	1	12956	12956		15.847	1.0089	1	3048000			48101	9518	34921	35206	47021	47021					0.052972465545167324
SGKYLCTV	8	Unmodified	_SGKYLCTV_					0	0	0		ENSG00000134115|ENST00000446702|CNTN6;CNTN6|p.H571Y|1|0.46|ENSG00000134115|chr3:1372880-1372880|C/T|missense_variant	ENSG00000134115|ENST00000446702|CNTN6	ENSG00000134115|ENST00000446702|CNTN6	MSMS	A375_MHC_IP_R2	2	435.6222229003906	2	435.723121	869.431689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.042	1	94.786	94.286	95.286	0.74474								0	0	0	0.16876	1	35744	35744		13.508	0.97634	1				48102	4551	34922	35207	47022	47022					-0.008249352743177951
SGLALQWTPQE	11	Unmodified	_SGLALQWTPQE_					0	0	0			REV__ENSG00000115649|ENST00000360507|CNPPD1	REV__ENSG00000115649|ENST00000360507|CNPPD1	MULTI-MSMS	A375_MHC_IP_R1	1	616.2130126953125	2	615.311677	1228.6088	-0.40724	-0.00025058	0.26378	0.0001623	-0.14346	-8.8274E-05	615.8132884591557	58.836	0.50935	58.836	58.633	59.143	0					13	9	3	0	0	0	0.62292	1	21173	21173		21.537	1.1224	1	1798400	+		48103	17903	34923	35208	47023	47023					0.003641918095354413
SGLALQWTPQE	11	Unmodified	_SGLALQWTPQE_					0	0	0			REV__ENSG00000115649|ENST00000360507|CNPPD1	REV__ENSG00000115649|ENST00000360507|CNPPD1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	615.311677	1228.6088	-0.40724	-0.00025058	0.26378	0.0001623	-0.14346	-8.8274E-05	615.8132884591557	58.836	0.50935	58.836	58.633	59.143	0	0.0013185	-9.7614E-05	NaN	21.537	13	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1798400	+		48104	17903	34923	35208							0.003641918095354413
SGLALQWTPQE	11	Unmodified	_SGLALQWTPQE_					0	0	0			REV__ENSG00000115649|ENST00000360507|CNPPD1	REV__ENSG00000115649|ENST00000360507|CNPPD1	MULTI-MATCH	A375_MHC_IP_R2	2		2	615.311677	1228.6088	-0.88003	-0.00054149	0.48616	0.00029914	-0.39387	-0.00024235	615.3115754848228	58.084	0.35122	58.833	58.629	58.98	0.74894	-0.0013185	0.00017606	NaN	21.537	10	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1568800	+		48105	17903	34923	35208							0.003641918095354413
SGLILELGFI	10	Unmodified	_SGLILELGFI_					0	0	0			REV__nc|ENSG00000173262|Q8TDB8-4|SLC2A14	REV__nc|ENSG00000173262|Q8TDB8-4|SLC2A14	MULTI-SECPEP	A375_MHC_IP_R1	1	530.7112426757812	2	531.3157	1060.61685	-0.79309	-0.00042138	-1.3495	-0.000717	-2.1426	-0.0011384	531.3147798562599	129.52	0.25481	129.52	129.4	129.65	0					6	4	2	0	0	0	0.61429	1	49828	49828		37.974	5.6685	1	1307300	+		48106	21209	34924	35209	47024	47024					0.0889637079694694
SGLLERKH	8	Unmodified	_SGLLERKH_					0	0	0			REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	MULTI-MSMS	A375_MHC_IP_R1	1	470.6716003417969	2	470.272158	938.529764	-0.33611	-0.00015806	0.035948	1.6905E-05	-0.30016	-0.00014116	470.27205781242617	128.66	1.7278	128.66	128.28	130.01	0					76	33	5	0	0	0	0.7773	1	49355	49355		4.756	0	1	266110000	+		48107	18720	34925	35210	47025	47025					0.05804009365908769
SGLLHQLGPVN	11	Unmodified	_SGLLHQLGPVN_					0	0	0			REV__ENST00000469067.5_1_9:90113992-90265069:+|nuORF	REV__ENST00000469067.5_1_9:90113992-90265069:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	378.924560546875	3	378.880379	1133.61931	0.25498	9.6607E-05	4.3948	0.0016651	4.6498	0.0017617	378.88030029924937	52.604	0.60988	52.604	52.287	52.897	0					33	11	5	0	0	0	0.69231	1	18736	18736		9.2438	0	1	2630300	+		48108	22227	34926	35211	47026	47026					0.05784219254633172
SGLLVPPD	8	Unmodified	_SGLLVPPD_					0	0	0		ENSG00000147596|ENST00000276594|PRDM14	ENSG00000147596|ENST00000276594|PRDM14	ENSG00000147596|ENST00000276594|PRDM14	MSMS	A375_MHC_IP_R2	2	399.2673645019531	2	399.223811	796.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.091	1	33.844	33.344	34.344	0.75225								0	0	0	0.16876	1	11827	11827		24.674	5.2349	1				48109	5694	34927	35212	47027	47027					0.026710220860877598
SGLSWKKKKE	10	Unmodified	_SGLSWKKKKE_					0	0	0		ENST00000531877.1_2_11:93428741-93428801:+|nuORF;ENST00000325212.10_2_11:93428741-93429513:+|nuORF	ENST00000531877.1_2_11:93428741-93428801:+|nuORF	ENST00000531877.1_2_11:93428741-93428801:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	397.9678955078125	3	397.567912	1189.68191	-0.078698	-3.1288E-05	0.041024	1.631E-05	-0.037674	-1.4978E-05	397.567853773588	40.726	0.55441	40.726	40.509	41.063	0					24	10	3	0	0	0	0.36067	1	14003	14003		25.997	6.8535	1	9157100			48110	10722	34928	35213	47028	47028					0.09465365322807884
SGNEVTQLLF	10	Unmodified	_SGNEVTQLLF_					0	0	0			REV__nc|ENSG00000016602|Q14CN2-2|CLCA4	REV__nc|ENSG00000016602|Q14CN2-2|CLCA4	MULTI-SECPEP	A375_MHC_IP_R1	1	370.26116943359375	3	369.860873	1106.56079	0.43324	0.00016024	1.2227	0.00045222	1.6559	0.00061246	369.8612225343312	35.319	0.66318	35.319	35.013	35.676	0					20	12	2	0	0	0	0.90513	1	11719	11719		10.899	0	1	3733300	+		48111	16251	34929	35214	47029	47029					0.011771178894605328
SGNKFSVRF	9	Unmodified	_SGNKFSVRF_					0	0	0			REV__nc|ENSG00000163947|Q9NR81-4|ARHGEF3	REV__nc|ENSG00000163947|Q9NR81-4|ARHGEF3	MULTI-SECPEP	A375_MHC_IP_R1	1	521.1432495117188	2	521.277441	1040.54033	-0.81498	-0.00042483	1.1089	0.00057805	0.29393	0.00015322	521.2780886706912	38.345	0.25654	38.345	38.218	38.475	0					7	4	2	0	0	0	0.62767	1	13031	13031		23.148	2.6948	1	2139000	+		48112	20430	34930	35215	47030	47030					0.02167992020326892
SGNPTVLYAIW	11	Unmodified	_SGNPTVLYAIW_					0	0	0			REV__ENSG00000168116|ENST00000370733|KIAA1586	REV__ENSG00000168116|ENST00000370733|KIAA1586	MULTI-SECPEP	A375_MHC_IP_R2	2	610.6888427734375	2	610.819138	1219.62372	-0.64022	-0.00039106	-3.2731	-0.0019993	-3.9133	-0.0023903	611.31852203393	66.242	0.56133	66.979	66.73	67.291	0.73738					13	10	2	0	0	0	0.88813	1	25142	25142		24.991	10.586	1	830930	+		48113	20828	34931	35216	47031	47031					0.022696836775139673
SGNRGARQ	8	Unmodified	_SGNRGARQ_					0	0	0			REV__ENSG00000148468|ENST00000378116|FAM171A1	REV__ENSG00000148468|ENST00000378116|FAM171A1	MULTI-MSMS	A375_MHC_IP_R1	1	423.6205749511719	2	423.220457	844.426361	-0.4064	-0.000172	0.74063	0.00031345	0.33423	0.00014145	423.22070052476175	141.7	0.60959	141.7	141.27	141.88	0					23	11	3	0	0	0	0.7773	1	54293	54293		4.756	4.756	1	5011900	+		48114	19633	34932	35217	47032	47032					-0.002074780219118111
SGNRGARQ	8	Unmodified	_SGNRGARQ_					0	0	0			REV__ENSG00000148468|ENST00000378116|FAM171A1	REV__ENSG00000148468|ENST00000378116|FAM171A1	MULTI-SECPEP	A375_MHC_IP_R2	2	422.9939880371094	2	423.220457	844.426361	0.05173	2.1893E-05	0.32619	0.00013805	0.37792	0.00015994	423.2205667962947	139.86	0.6646	139.92	139.6	140.26	0.059906					19	12	2	0	0	0	0.972	1	54767	54767		2.0598	2.0598	1	2690300	+		48115	19633	34932	35217	47033	47033					-0.002074780219118111
SGNRGARQ	8	Unmodified	_SGNRGARQ_					0	0	0			REV__ENSG00000148468|ENST00000378116|FAM171A1	REV__ENSG00000148468|ENST00000378116|FAM171A1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	423.220457	844.426361	-0.4064	-0.000172	0.74063	0.00031345	0.33423	0.00014145	423.22070052476175	141.7	0.60959	141.7	141.27	141.88	0	-0.018657	-2.3723E-05	NaN	4.756	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5011900	+		48116	19633	34932	35217							-0.002074780219118111
SGNRGARQ	8	Unmodified	_SGNRGARQ_					0	0	0			REV__ENSG00000148468|ENST00000378116|FAM171A1	REV__ENSG00000148468|ENST00000378116|FAM171A1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	423.220457	844.426361	0.049972	2.1149E-05	0.78538	0.00033239	0.83535	0.00035354	423.22071010558494	141.71	0.51215	141.74	141.31	141.83	0.033218	0.018657	1.4158E-05	NaN	4.756	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3987300	+		48117	19633	34932	35217							-0.002074780219118111
SGPFGHDG	8	Unmodified	_SGPFGHDG_					0	0	0			REV__ENSG00000187498|ENST00000375820|COL4A1	REV__ENSG00000187498|ENST00000375820|COL4A1	MULTI-SECPEP	A375_MHC_IP_R1	1	772.8683471679688	1	773.321293	772.314017	-0.82629	-0.00063899	-1.472	-0.0011383	-2.2982	-0.0017773	773.3197661825079	144.36	0.23755	144.36	144.16	144.4	0					6	4	2	0	0	0	0.972	1	55370	55370		0.69038	0	1	331700	+		48118	22022	34933	35218	47034	47034					-0.08124751818763798
SGPFGQLF	8	Unmodified	_SGPFGQLF_					0	0	0		ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENST00000587204.1_1_18:12308291-12311096:+|nuORF	ENST00000417736.2_1_18:12308439-12326126:+|nuORF	ENST00000417736.2_1_18:12308439-12326126:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	427.1157531738281	2	426.716153	851.417754	0.24964	0.00010653	-0.23181	-9.8915E-05	0.017837	7.6112E-06	426.71590660861517	115.71	0.66266	115.71	115.32	115.99	0					20	12	2	0	0	0	0.13073	1	42405	42405		89.427	0	1	3511900			48119	7993	34934	35219	47035	47035					-0.013898447111046153
SGPFGQLF	8	Unmodified	_SGPFGQLF_					0	0	0		ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENST00000587204.1_1_18:12308291-12311096:+|nuORF	ENST00000417736.2_1_18:12308439-12326126:+|nuORF	ENST00000417736.2_1_18:12308439-12326126:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	852.8248901367188	1	852.42503	851.417754	0.046431	3.9579E-05	0.075858	6.4663E-05	0.12229	0.00010424	852.4251869089694	115.71	1.0183	115.71	115.38	116.4	0					30	19	2	0	0	0	0.063422	1	42514	42514		139.54	0	1	9143900			48120	7993	34934	35219	47036	47036					-0.013898447111046153
SGPFGQLF	8	Unmodified	_SGPFGQLF_					0	0	0		ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENST00000587204.1_1_18:12308291-12311096:+|nuORF	ENST00000417736.2_1_18:12308439-12326126:+|nuORF	ENST00000417736.2_1_18:12308439-12326126:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	427.115966796875	2	426.716153	851.417754	0.0131	5.5901E-06	-0.13481	-5.7527E-05	-0.12171	-5.1937E-05	426.71605377441193	114.75	0.71707	115.44	115.12	115.83	0.68999					23	13	2	0	0	0	0.16592	1	43232	43232		77.984	0	1	3449200			48121	7993	34934	35219	47037	47037					-0.013898447111046153
SGPFGQLF	8	Unmodified	_SGPFGQLF_					0	0	0		ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENST00000587204.1_1_18:12308291-12311096:+|nuORF	ENST00000417736.2_1_18:12308439-12326126:+|nuORF	ENST00000417736.2_1_18:12308439-12326126:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	852.42503	851.417754	-0.46728	-0.00039832	-0.19642	-0.00016744	-0.66371	-0.00056576	852.4250779102568	114.8	0.71707	115.49	115.12	115.83	0.69	-0.11002	-0.0001321	NaN	139.54	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7617400			48122	7993	34934	35219							-0.013898447111046153
SGPHVLLS	8	Unmodified	_SGPHVLLS_					0	0	0		ENSG00000136144|ENST00000378302|RCBTB1;RCBTB1|p.E132Kfs*2|1|0.36|ENSG00000136144|chr13:49559968-49559968|C/-|frameshift_variant;nc|ENSG00000136144|Q8NDN9-2|RCBTB1	ENSG00000136144|ENST00000378302|RCBTB1	ENSG00000136144|ENST00000378302|RCBTB1	MULTI-MSMS	A375_MHC_IP_R1	1	405.62908935546875	2	405.229428	808.444303	-0.25409	-0.00010297	0.59268	0.00024017	0.33859	0.00013721	405.2295766520131	54.338	0.65765	54.338	54.063	54.72	0					25	12	3	0	0	0	0.45507	1	19396	19396		50.855	3.9342	1	5275300			48123	4756	34935	35220	47038	47038					0.03241844180240605
SGPHVLLS	8	Unmodified	_SGPHVLLS_					0	0	0		ENSG00000136144|ENST00000378302|RCBTB1;RCBTB1|p.E132Kfs*2|1|0.36|ENSG00000136144|chr13:49559968-49559968|C/-|frameshift_variant;nc|ENSG00000136144|Q8NDN9-2|RCBTB1	ENSG00000136144|ENST00000378302|RCBTB1	ENSG00000136144|ENST00000378302|RCBTB1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	405.229428	808.444303	-0.54721	-0.00022175	0.49611	0.00020104	-0.051106	-2.071E-05	405.2295669774461	53.46	0.66401	54.211	53.893	54.557	0.75105	-0.063517	-3.5845E-05	NaN	50.855	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4894300			48124	4756	34935	35220							0.03241844180240605
SGPKPKAS	8	Unmodified	_SGPKPKAS_					0	0	0		ENST00000438837.1_1_21:45141706-45152130:+|nuORF	ENST00000438837.1_1_21:45141706-45152130:+|nuORF	ENST00000438837.1_1_21:45141706-45152130:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	386.25238037109375	2	386.221603	770.428653	-0.50173	-0.00019378	0.53474	0.00020653	0.03301	1.2749E-05	386.2217433794425	34.158	0.50835	34.91	34.6	35.108	0.75225					12	9	2	0	0	0	0.77715	1	12367	12367		5.2969	0.96765	1	7308300			48125	11953	34936	35221	47039	47039					0.03425557663183554
SGPLITHA	8	Unmodified	_SGPLITHA_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	398.62158203125	2	398.221603	794.428653	-0.29674	-0.00011817	0.30874	0.00012295	0.012004	4.7802E-06	398.22167347849194	41.004	0.35194	41.004	40.813	41.164	0					11	6	2	0	0	0	0.71451	1	14151	14151		30.225	0	1	2625300	+		48126	20766	34937	35222	47040	47040					0.023215576631855583
SGPLPPAAF	9	Unmodified	_SGPLPPAAF_					0	0	0		CON__ENSEMBL:ENSBTAP00000018574	CON__ENSEMBL:ENSBTAP00000018574	CON__ENSEMBL:ENSBTAP00000018574	MULTI-MSMS	A375_MHC_IP_R1	1	429.291015625	2	428.731803	855.449054	-0.17803	-7.6325E-05	-0.11607	-4.9761E-05	-0.29409	-0.00012609	428.7317531981151	61.137	0.56095	61.137	60.821	61.382	0					19	10	2	0	0	0	0.1978	1	21985	21985		38.151	4.0487	1	4205700		+	48127	571	34938	35223	47041	47041					0.01554728322992105
SGPRVPFVRL	10	Unmodified	_SGPRVPFVRL_					0	0	0			REV__ENSG00000123472|ENST00000574428|ATPAF1	REV__ENSG00000123472|ENST00000574428|ATPAF1	MSMS	A375_MHC_IP_R1	1	376.60040283203125	3	376.560981	1126.66111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.431	1	28.431	27.931	28.931	0								0	0	0	0.15522	1	8772	8772		3.8763	0	1		+		48128	18244	34939	35224	47042	47042					0.10284819733806216
SGQEIQQYI	9	Unmodified	_SGQEIQQYI_					0	0	0		nc|ENSG00000065618|Q9UMD9-2|COL17A1;ENSG00000065618|ENST00000648076|COL17A1	nc|ENSG00000065618|Q9UMD9-2|COL17A1	nc|ENSG00000065618|Q9UMD9-2|COL17A1	MULTI-MSMS	A375_MHC_IP_R2	2	533.6621704101562	2	533.264196	1064.51384	-0.51664	-0.00027551	-0.59815	-0.00031897	-1.1148	-0.00059448	533.263655303045	113.21	1.1703	113.92	113.46	114.63	0.70985					46	22	3	0	0	0	0.65721	1	42660	42660		10.824	0	1	6332400			48129	1390	34940	35225	47043	47043					-0.015837416616705013
SGQHAAPL	8	Unmodified	_SGQHAAPL_					0	0	0		ENST00000404284.6_1_22:35717823-35727385:+|nuORF;nc|ENSG00000100284|O60784-4|TOM1;ENST00000424387.5_1_22:35695884-35743199:+|nuORF;ENSG00000100284|ENST00000449058|TOM1;nc|ENSG00000100284|O60784-2|TOM1;nc|ENSG00000100284|O60784-3|TOM1	ENST00000404284.6_1_22:35717823-35727385:+|nuORF	ENST00000404284.6_1_22:35717823-35727385:+|nuORF	MSMS	A375_MHC_IP_R1	1	390.61737060546875	2	390.703577	779.392602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.27	1	106.27	105.77	106.77	0								0	0	0	0.16876	1	39011	39011		0.79363	0	1				48130	2151	34941	35226	47044	47044					-0.005918995136880767
SGQHHIFSFF	10	Unmodified	_SGQHHIFSFF_					0	0	0		ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant;ANK2|p.D3531Ffs*6|1|0.05|ENSG00000145362|chr4:113359207-113359208|-/ATTCTAT|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;nc|ENSG00000145362|Q01484-7|ANK2	ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant	ANK2|p.E3530Qfs*6|1|0.06|ENSG00000145362|chr4:113359205-113359206|-/CAAA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	403.2752380371094	3	402.861207	1205.56179	-0.27647	-0.00011138	3.6871	0.0014854	3.4107	0.001374	403.19706276639903	24.265	0.25396	24.909	24.755	25.009	0.64368					9	4	3	0	0	0	0.93405	1	7953	7953		2.8433	1.101	1	2389700			48131	132	34942	35227	47045	47045					-0.03276622950966157
SGRCCPFCCCC	11	Unmodified	_SGRCCPFCCCC_					0	0	0			REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	MSMS	A375_MHC_IP_R1	1	591.1647338867188	2	591.178003	1180.34145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.519	1	21.519	21.019	22.019	0								0	0	0	0.1636	1	5669	5669		0	0	1		+		48132	27430	34943	35228	47046	47046					-0.24150458524218266
SGRRRPLLP	9	Unmodified	_SGRRRPLLP_					0	0	0		nc|ENSG00000127952|Q9Y6J8-3|STYXL1	nc|ENSG00000127952|Q9Y6J8-3|STYXL1	nc|ENSG00000127952|Q9Y6J8-3|STYXL1	MSMS	A375_MHC_IP_R1	1	526.4384765625	2	526.327799	1050.64105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.006	1	30.006	29.506	30.506	0								0	0	0	0.15486	1	9477	9477		7.9102	0	1				48133	14589	34944	35229	47047	47047					0.11775068793849641
SGSDELDEQE	10	Unmodified	_SGSDELDEQE_					0	0	0			REV__ENSG00000227729|ENST00000557640|RD3L	REV__ENSG00000227729|ENST00000557640|RD3L	MSMS	A375_MHC_IP_R2	2	554.6743774414062	2	554.717473	1107.42039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.865	1	61.61	61.11	62.11	0.74503								0	0	0	0.1524	1	23054	23054		13.042	2.9685	1		+		48134	22732	34945	35230	47048	47048					-0.129021306254117
SGSDGFGLERV	11	Unmodified	_SGSDGFGLERV_					0	0	0			REV__SIGLEC1|p.L868F|1|0.39|ENSG00000088827|chr20:3696667-3696667|G/A|missense_variant	REV__SIGLEC1|p.L868F|1|0.39|ENSG00000088827|chr20:3696667-3696667|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	562.6720581054688	2	562.272552	1122.53055	-0.64972	-0.00036532	-3.5357	-0.001988	-4.1854	-0.0023534	562.7699491817883	66.417	1.0704	66.417	66.072	67.143	0					44	20	5	0	0	0	0.87079	1	24019	24019		16.566	1.3174	1	3056100	+		48135	27963	34946	35231	47049	47049					-0.025812407757030087
SGSFRPYGPA	10	Unmodified	_SGSFRPYGPA_					0	0	0			REV__ENSG00000266074|ENST00000675386|BAHCC1	REV__ENSG00000266074|ENST00000675386|BAHCC1	MULTI-SECPEP	A375_MHC_IP_R1	1	520.1542358398438	2	519.753798	1037.49304	-0.47316	-0.00024593	0.92162	0.00047902	0.44846	0.00023309	519.7540489264682	79.548	0.56477	79.548	79.214	79.778	0					16	10	2	0	0	0	0.76414	1	29065	29065		10.074	0	1	2408100	+		48136	22925	34947	35232	47050	47050					-0.024202872506748463
SGSHKIQSDF	10	Unmodified	_SGSHKIQSDF_					0	0	0		ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	MULTI-MSMS	A375_MHC_IP_R1	1	553.715576171875	2	553.26727	1104.51999	-0.4912	-0.00027176	-0.21933	-0.00012135	-0.71053	-0.00039311	553.267073604071	77.839	0.46036	77.839	77.588	78.048	0					13	8	2	0	0	0	0.69833	1	28368	28368		13.042	0.51092	1	1919800			48137	9903	34948	35233	47051	47051					-0.028092234301539065
SGSLELPPTSF	11	Unmodified	_SGSLELPPTSF_					0	0	0			REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549	REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549	MULTI-SECPEP	A375_MHC_IP_R1	1	378.2684020996094	3	378.860761	1133.56045	0.44214	0.00016751	0.76063	0.00028817	1.2028	0.00045568	378.86105408690645	35.943	0.96732	35.943	35.269	36.236	0					24	18	2	0	0	0	0.90584	1	12001	12001		17.863	3.645	1	3044000	+		48138	18219	34949	35234	47052	47052					-0.0009830183039412077
SGSLEVIRKW	10	Unmodified	_SGSLEVIRKW_					0	0	0		nc|ENSG00000123358|P22736-2|NR4A1;ENSG00000123358|ENST00000394825|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	MULTI-MSMS	A375_MHC_IP_R2	2	392.6242370605469	3	392.224146	1173.65061	-0.521	-0.00020435	0.008596	3.3716E-06	-0.5124	-0.00020098	392.2243046844479	52.001	0.55952	52.754	52.524	53.083	0.75225					15	10	2	0	0	0	0.085909	1	19594	19594		66.683	47.962	1	3332600			48139	3841	34950	35235	47053	47053					0.07072792288704477
SGSNWIECEYP	11	Unmodified	_SGSNWIECEYP_					0	0	0			REV__ENST00000593983.5_1_19:43519347-43523525:-|nuORF	REV__ENST00000593983.5_1_19:43519347-43523525:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	643.1836547851562	2	642.763703	1283.51285	-0.7204	-0.00046305	3.3613	0.0021605	2.6409	0.0016975	642.7662539954406	32.459	0.35269	32.459	32.282	32.634	0					8	6	2	0	0	0	0.78118	1	10528	10528		15.248	10.351	1	1478400	+		48140	22805	34951	35236	47054	47054					-0.11756324092880277
SGSRVQRKF	9	Unmodified	_SGSRVQRKF_					0	0	0			REV__ENSG00000205301|ENST00000511113|MGAT4D	REV__ENSG00000205301|ENST00000511113|MGAT4D	MULTI-MSMS	A375_MHC_IP_R2	2	355.5793762207031	3	355.536835	1063.58868	-0.63854	-0.00022702	-1.4669	-0.00052153	-2.1054	-0.00074856	355.5363958325144	25	1.0185	25.644	25.414	26.433	0.64368					39	19	3	0	0	0	0.64971	1	8396	8396		11.495	0.6952	1	63645000	+		48141	22567	34952	35237	47055	47055					0.05942485660239072
SGSSDGTIRLW	11	Unmodified	_SGSSDGTIRLW_					0	0	0		ENSG00000114742|ENST00000302313|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;nc|ENSG00000114742|Q8TAF3-5|WDR48	ENSG00000114742|ENST00000302313|WDR48	ENSG00000114742|ENST00000302313|WDR48	MULTI-SECPEP	A375_MHC_IP_R1	1	590.1932983398438	2	589.793652	1177.57275	-0.31894	-0.00018811	0.98235	0.00057938	0.66341	0.00039127	589.7934576807362	75.49	0.704	75.49	75.262	75.966	0					30	13	4	0	0	0	0.0042286	1	27543	27543		139.38	51.014	1	5278200			48142	3241	34953	35238	47056	47056					-0.008932653673355162
SGSVNEFSGY	10	Unmodified	_SGSVNEFSGY_					0	0	0			REV__ENSG00000149577|ENST00000324225|SIDT2	REV__ENSG00000149577|ENST00000324225|SIDT2	MSMS	A375_MHC_IP_R1	1	523.6424560546875	2	523.724904	1045.43525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.781	1	85.781	85.281	86.281	0								0	0	0	0.15207	1	31443	31443		13.906	3.0821	1		+		48143	19691	34954	35239	47057	47057					-0.08564593966730172
SGSVRQCC	8	Unmodified	_SGSVRQCC_					0	0	0			REV__ENST00000426333.6_1_17:42928380-42928641:-|nuORF	REV__ENST00000426333.6_1_17:42928380-42928641:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	420.57855224609375	2	420.178555	838.342557	-0.14653	-6.157E-05	0.409	0.00017185	0.26247	0.00011028	420.1786627960111	131.5	0.65778	131.5	130.97	131.63	0					16	12	2	0	0	0	0.7779	1	50703	50703		2.5775	0.27475	1	7752400	+		48144	24650	34955	35240	47058	47058					-0.08308093505479519
SGSVRQCC	8	Unmodified	_SGSVRQCC_					0	0	0			REV__ENST00000426333.6_1_17:42928380-42928641:-|nuORF	REV__ENST00000426333.6_1_17:42928380-42928641:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	420.178555	838.342557	-0.14653	-6.157E-05	0.409	0.00017185	0.26247	0.00011028	420.1786627960111	131.5	0.65778	131.5	130.97	131.63	0	0.069288	6.6248E-06	NaN	2.5775	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7752400	+		48145	24650	34955	35240							-0.08308093505479519
SGTAETEPV	9	Unmodified	_SGTAETEPV_					0	0	0		ENST00000572085.5_1_15:43707600-43785241:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1;ENST00000480860.1_1_15:43733722-43748345:-|nuORF;ENST00000605155.1_1_15:43738784-43748345:-|nuORF	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	445.63006591796875	2	445.708722	889.402892	0.027419	1.2221E-05	-0.64701	-0.00028838	-0.61959	-0.00027616	445.70832247077715	28.584	0.60635	28.584	28.339	28.945	0					15	11	2	0	0	0	0.6898	1	8866	8866		7.9102	0	1	2612000			48146	1437	34956	35241	47059	47059					-0.046233813697654114
SGTAETEPV	9	Unmodified	_SGTAETEPV_					0	0	0		ENST00000572085.5_1_15:43707600-43785241:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1;ENST00000480860.1_1_15:43733722-43748345:-|nuORF;ENST00000605155.1_1_15:43738784-43748345:-|nuORF	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	445.6298828125	2	445.708722	889.402892	-0.46908	-0.00020907	-0.67887	-0.00030258	-1.148	-0.00051165	445.70835235142243	27.973	0.45692	28.651	28.401	28.858	0.67857					13	8	2	0	0	0	0.64808	1	9625	9625		11.64	3.7301	1	2454700			48147	1437	34956	35241	47060	47060					-0.046233813697654114
SGTAETEPV	9	Unmodified	_SGTAETEPV_					0	0	0		ENST00000572085.5_1_15:43707600-43785241:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1;ENST00000480860.1_1_15:43733722-43748345:-|nuORF;ENST00000605155.1_1_15:43738784-43748345:-|nuORF	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	445.708722	889.402892	0.027419	1.2221E-05	-0.64701	-0.00028838	-0.61959	-0.00027616	445.70832247077715	28.584	0.60635	28.584	28.339	28.945	0	-0.033428	1.5554E-05	NaN	11.64	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2612000			48148	1437	34956	35241							-0.046233813697654114
SGTAETEPV	9	Unmodified	_SGTAETEPV_					0	0	0		ENST00000572085.5_1_15:43707600-43785241:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1;ENST00000480860.1_1_15:43733722-43748345:-|nuORF;ENST00000605155.1_1_15:43738784-43748345:-|nuORF	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	445.708722	889.402892	-0.46908	-0.00020907	-0.67887	-0.00030258	-1.148	-0.00051165	445.70835235142243	27.973	0.45692	28.651	28.401	28.858	0.67857	0.033428	-1.2849E-05	NaN	11.64	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2454700			48149	1437	34956	35241							-0.046233813697654114
SGTALLKDNP	10	Unmodified	_SGTALLKDNP_					0	0	0			REV__ENSG00000183751|ENST00000568546|TBL3	REV__ENSG00000183751|ENST00000568546|TBL3	MULTI-SECPEP	A375_MHC_IP_R1	1	508.6744079589844	2	508.274564	1014.53457	-0.48214	-0.00024506	0.21713	0.00011036	-0.26501	-0.0001347	508.2747455289114	89.873	0.75809	89.873	89.426	90.184	0					23	14	2	0	0	0	0.71464	1	33002	33002		27.223	4.5652	1	3646600	+		48150	21775	34957	35242	47061	47061					0.027888487179893673
SGTDIVRQI	9	Unmodified	_SGTDIVRQI_					0	0	0		ENSG00000198919|ENST00000361582|DZIP3;ENST00000495008.5_1_3:108355483-108366962:+|nuORF	ENSG00000198919|ENST00000361582|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	MSMS	A375_MHC_IP_R1	1	494.6844177246094	2	494.774731	987.534909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.939	1	46.939	46.439	47.439	0								0	0	0	0.12777	1	16493	16493		33.445	5.8161	1				48151	9371	34958	35243	47062	47062					0.04064268437844021
SGTISPPPPGF	11	Unmodified	_SGTISPPPPGF_					0	0	0		ENST00000541592.1_1_12:14922201-14923048:-|nuORF	ENST00000541592.1_1_12:14922201-14923048:-|nuORF	ENST00000541592.1_1_12:14922201-14923048:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	528.6907958984375	2	528.771657	1055.52876	-0.85967	-0.00045457	-0.36405	-0.0001925	-1.2237	-0.00064707	528.7713306791	61.705	0.60344	62.45	62.222	62.826	0.74497					34	11	4	0	0	0	0.4583	1	23473	23473		34.402	6.7729	1	19170000			48152	13288	34959	35244	47063	47063					0.00321750206330762
SGTPSRWSL	9	Unmodified	_SGTPSRWSL_					0	0	0		ENST00000366628.9_1_1:233115559-233115757:+|nuORF	ENST00000366628.9_1_1:233115559-233115757:+|nuORF	ENST00000366628.9_1_1:233115559-233115757:+|nuORF	MSMS	A375_MHC_IP_R2	2	495.6705627441406	2	495.753798	989.493044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.708	1	64.449	63.949	64.949	0.74022								0	0	0	0.1521	1	24157	24157		18.146	3.5647	1				48153	11063	34960	35245	47064	47064					-0.0021228725066748666
SGTSAGIFTW	10	Unmodified	_SGTSAGIFTW_					0	0	0			REV__SPN|p.S80F|1|0.56|ENSG00000197471|chr16:29663967-29663967|C/T|missense_variant	REV__SPN|p.S80F|1|0.56|ENSG00000197471|chr16:29663967-29663967|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	513.666259765625	2	513.748182	1025.48181	-0.85094	-0.00043717	-0.124	-6.3707E-05	-0.97494	-0.00050087	513.7481436899997	50.912	0.45416	51.666	51.462	51.917	0.75406					13	8	2	0	0	0	0.85226	1	19221	19221		14.838	14.838	1	791190	+		48154	28035	34961	35246	47065	47065					-0.02991109344816323
SGTVRLAPF	9	Unmodified	_SGTVRLAPF_					0	0	0		ENST00000467020.5_1_6:35436211-35436817:+|nuORF	ENST00000467020.5_1_6:35436211-35436817:+|nuORF	ENST00000467020.5_1_6:35436211-35436817:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	474.66876220703125	2	474.269084	946.523616	-0.62745	-0.00029758	0.45973	0.00021803	-0.16772	-7.9545E-05	474.2693478547842	65.104	1.016	65.843	65.359	66.375	0.73811					23	19	2	0	0	0	0.53098	1	24738	24738		27.223	7.7842	1	1360300			48155	12272	34962	35247	47066	47066					0.048214911343848144
SGVALHSFVW	10	Unmodified	_SGVALHSFVW_					0	0	0		tr|U7SPR8|U7SPR8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01875PE=4SV=1	tr|U7SPR8|U7SPR8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01875PE=4SV=1	tr|U7SPR8|U7SPR8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01875PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	368.59423828125	3	368.194186	1101.56073	0.27777	0.00010227	0.16358	6.0229E-05	0.44135	0.0001625	368.19419702850377	50.723	0.45585	50.723	50.459	50.915	0					18	8	3	0	0	0	0.87163	1	17997	17997		12.175	6.3913	1	1983900			48156	29584	34963	35248	47067	47067					0.0140116268012207
SGVEKGFR	8	Unmodified	_SGVEKGFR_					0	0	0		ENST00000524141.5_1_8:48192552-48196623:+|nuORF	ENST00000524141.5_1_8:48192552-48196623:+|nuORF	ENST00000524141.5_1_8:48192552-48196623:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	439.6623840332031	2	440.237784	878.461016	-0.14603	-6.4289E-05	0.51883	0.00022841	0.3728	0.00016412	440.23780117916533	34.233	0.35237	34.233	34.001	34.353	0					11	6	2	0	0	0	0.95423	1	11219	11219		0.45834	0	1	919060			48157	13055	34964	35249	47068	47068					0.01692345066192047
SGVPHHALSL	10	Unmodified	_SGVPHHALSL_					0	0	0		ENST00000520201.5_1_8:42177053-42177326:+|nuORF	ENST00000520201.5_1_8:42177053-42177326:+|nuORF	ENST00000520201.5_1_8:42177053-42177326:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	511.1893005371094	2	509.277441	1016.54033	-0.73516	-0.0003744	-2.3819	-0.0012131	-3.1171	-0.0015875	509.2771544171825	41.903	1.1721	42.678	42.098	43.27	0.77451					85	22	5	0	0	0	0.53946	1	15511	15511		25.399	2.2509	1	53667000			48158	12989	34965	35250	47069	47069					0.032719920203248876
SGVRRPIEVHV	11	Unmodified	_SGVRRPIEVHV_					0	0	0			REV__ENST00000490459.5_1_2:32095017-32236086:-|nuORF	REV__ENST00000490459.5_1_2:32095017-32236086:-|nuORF	MSMS	A375_MHC_IP_R2	2	624.713134765625	2	624.862203	1247.70985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.81	1	113.54	113.04	114.04	0.72458								0	0	0	0.16138	1	42526	42526		11.495	2.7493	1		+		48159	25384	34966	35251	47070	47070					0.09590688302887429
SGVSDSETEE	10	Unmodified	_SGVSDSETEE_					0	0	0		LRGUK|p.A772V|1|0.53|ENSG00000155530|chr7:134258373-134258373|C/T|missense_variant	LRGUK|p.A772V|1|0.53|ENSG00000155530|chr7:134258373-134258373|C/T|missense_variant	LRGUK|p.A772V|1|0.53|ENSG00000155530|chr7:134258373-134258373|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	520.2008056640625	2	520.206741	1038.39893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.483	1	79.483	78.983	79.983	0								0	0	0	0.15158	1	29014	29014		14.838	0.25658	1				48160	14313	34967	35252	47071	47071					-0.11873515654110633
SGVSEFRLF	9	Unmodified	_SGVSEFRLF_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-SECPEP	A375_MHC_IP_R1	1	521.6713256835938	2	521.271824	1040.5291	-0.71338	-0.00037186	-0.46658	-0.00024321	-1.18	-0.00061508	521.2716347802407	85.928	0.70944	85.928	85.412	86.121	0					23	13	2	0	0	0	0.54812	1	31492	31492		19.362	9.288	1	3251700	+		48161	20554	34968	35253	47072	47072					0.010451699261693648
SGVYHGLVDK	10	Unmodified	_SGVYHGLVDK_					0	0	0			REV__NEB|p.V4554Gfs*42|1|0.12|ENSG00000183091|chr2:151562738-151562739|-/CC|frameshift_variant	REV__NEB|p.V4554Gfs*42|1|0.12|ENSG00000183091|chr2:151562738-151562739|-/CC|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	539.2265014648438	2	537.782556	1073.55056	-0.5933	-0.00031906	0.21515	0.0001157	-0.37815	-0.00020336	537.7826276295991	51.166	0.56005	51.166	50.915	51.475	0					30	10	4	0	0	0	0.52785	1	18158	18158		26.268	5.8145	1	16641000	+		48162	21736	34969	35254	47073	47073					0.016725549548937124
SGWNPNANG	9	Unmodified	_SGWNPNANG_					0	0	0		tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	458.66357421875	2	458.699023	915.383493	-0.16353	-7.5012E-05	3.19	0.0014633	3.0265	0.0013883	458.70123717264596	139.82	0.15187	139.88	139.75	139.9	0.059906					4	2	2	0	0	0	0.73415	1	54762	54762		3.9444	1.3669	1	507720			48163	29624	34970	35255	47074	47074					-0.07758292870005334
SGWRIWSHM	9	Unmodified	_SGWRIWSHM_					0	0	0			REV__ARHGAP10|p.K370Rfs*42|1|0.17|ENSG00000071205|chr4:147906710-147906710|A/-|frameshift_variant	REV__ARHGAP10|p.K370Rfs*42|1|0.17|ENSG00000071205|chr4:147906710-147906710|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	580.1557006835938	2	580.276918	1158.53928	-0.39445	-0.00022889	-1.4749	-0.00085587	-1.8694	-0.0010848	580.2757594577109	71.018	0.75905	71.752	71.302	72.061	0.73421					22	14	2	0	0	0	0.69674	1	26879	26879		7.2892	0.56607	1	2342100	+		48164	15432	34971	35256	47075	47075					-0.033645456202293644
SGWWYISV	8	Unmodified	_SGWWYISV_					0	0	0			REV__ENSG00000198938|ENST00000362079|MT-CO3	REV__ENSG00000198938|ENST00000362079|MT-CO3	MULTI-MSMS	A375_MHC_IP_R1	1	499.64239501953125	2	499.242535	996.470518	-0.37372	-0.00018658	0.21448	0.00010708	-0.15924	-7.9498E-05	499.24252101418017	87.932	0.71339	87.932	87.593	88.307	0					26	13	3	0	0	0	0.77123	1	32252	32252		14.582	4.3983	1	4272200	+		48165	22454	34972	35257	47076	47076					-0.0278588664829158
SGWWYISV	8	Unmodified	_SGWWYISV_					0	0	0			REV__ENSG00000198938|ENST00000362079|MT-CO3	REV__ENSG00000198938|ENST00000362079|MT-CO3	MULTI-MSMS	A375_MHC_IP_R2	2	499.7178955078125	2	499.242535	996.470518	-0.43185	-0.0002156	1.1005	0.00054941	0.66863	0.00033381	499.2427249121708	87.123	0.65972	87.856	87.407	88.067	0.73301					32	12	5	0	0	0	0.77123	1	33103	33103		14.582	5.2343	1	5346100	+		48166	22454	34972	35257	47077	47077					-0.0278588664829158
SGYAMCLP	8	Unmodified	_SGYAMCLP_					0	0	0		ENSG00000127080|ENST00000287996|IPPK	ENSG00000127080|ENST00000287996|IPPK	ENSG00000127080|ENST00000287996|IPPK	MSMS	A375_MHC_IP_R1	1	421.143798828125	2	421.182774	840.350996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.58	1	108.58	108.08	109.08	0								0	0	0	0.16876	1	39830	39830		5.7604	2.8712	1				48167	4075	34973	35258	47078	47078					-0.07556539588858868
SGYQILHM	8	Oxidation (M)	_SGYQILHM(Oxidation (M))_		SGYQILHM(1)		SGYQILHM(51)	0	0	1		ENSG00000181751|ENST00000319933|MACIR	ENSG00000181751|ENST00000319933|MACIR	ENSG00000181751|ENST00000319933|MACIR	MULTI-SECPEP	A375_MHC_IP_R1	1	483.13128662109375	2	482.731477	963.448402	-0.25796	-0.00012452	0.75703	0.00036544	0.49908	0.00024092	482.73138176801575	43.518	0.61062	43.518	43.197	43.808	0					19	11	2	0	0	0	0.50167	1	15150	15150		50.855	23.971	1	2383600			48168	8358	34974	35259	47079	47079		403			-0.0347843438835298
SGYQILHM	8	Unmodified	_SGYQILHM_					0	0	0		ENSG00000181751|ENST00000319933|MACIR	ENSG00000181751|ENST00000319933|MACIR	ENSG00000181751|ENST00000319933|MACIR	MULTI-MSMS	A375_MHC_IP_R2	2	475.1339111328125	2	474.73402	947.453487	-0.68536	-0.00032536	-0.14052	-6.671E-05	-0.82588	-0.00039207	474.734109952026	66.427	0.86801	67.163	66.729	67.597	0.73631					25	16	2	0	0	0	0.16366	1	25158	25158		81.864	49.747	1	2365600			48169	8358	34974	35260	47080	47080					-0.02234130525744149
SGYQRLFGQY	10	Unmodified	_SGYQRLFGQY_					0	0	0			REV__nc|ENSG00000182511|P07332-2|FES	REV__nc|ENSG00000182511|P07332-2|FES	MULTI-SECPEP	A375_MHC_IP_R2	2	610.5833129882812	2	609.798737	1217.58292	-0.71472	-0.00043583	-1.3469	-0.00082134	-2.0616	-0.0012572	610.29886830686	71.827	1.0635	72.562	72.314	73.377	0.73421					27	20	2	0	0	0	0.88918	1	27324	27324		8.7454	0	1	1208100	+		48170	21697	34975	35261	47081	47081					-0.017166576420777346
SHAAPQLVLGV	11	Unmodified	_SHAAPQLVLGV_					0	0	0		nc|ENSG00000170959|M0R2J8|DCDC1;ENSG00000170959|ENST00000684477|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-SECPEP	A375_MHC_IP_R2	2	365.265869140625	3	364.545108	1090.61349	-0.20457	-7.4574E-05	-0.18814	-6.8587E-05	-0.39271	-0.00014316	364.54484397729664	34.637	0.50601	35.401	35.171	35.677	0.76338					16	9	2	0	0	0	0.95991	1	12560	12560		4.4062	1.5629	1	5198400			48171	7564	34976	35262	47082	47082					0.07181120742939129
SHALKKKKL	9	Unmodified	_SHALKKKKL_					0	0	0		DACT3|p.I615K|1|0.21|ENSG00000197380|chr19:46648528-46648528|A/T|missense_variant	DACT3|p.I615K|1|0.21|ENSG00000197380|chr19:46648528-46648528|A/T|missense_variant	DACT3|p.I615K|1|0.21|ENSG00000197380|chr19:46648528-46648528|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	352.2662048339844	3	351.569476	1051.6866	-0.30393	-0.00010685	0.25471	8.9549E-05	-0.049213	-1.7302E-05	351.56952346561536	27.789	0.55441	27.789	27.533	28.088	0					16	10	2	0	0	0	0.72623	1	8488	8488		9.544	2.9136	1	2439300			48172	709	34977	35263	47083	47083					0.1628229425621157
SHALKKKKL	9	Unmodified	_SHALKKKKL_					0	0	0		DACT3|p.I615K|1|0.21|ENSG00000197380|chr19:46648528-46648528|A/T|missense_variant	DACT3|p.I615K|1|0.21|ENSG00000197380|chr19:46648528-46648528|A/T|missense_variant	DACT3|p.I615K|1|0.21|ENSG00000197380|chr19:46648528-46648528|A/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	351.569476	1051.6866	-0.37312	-0.00013118	0.97862	0.00034405	0.60551	0.00021288	351.9042936134877	27.008	0.46091	27.676	27.474	27.935	0.6679	-0.056451	0.00063439	NaN	9.544	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2088500			48173	709	34977	35263							0.1628229425621157
SHANELLPPG	10	Unmodified	_SHANELLPPG_					0	0	0			REV__ENSG00000115904|ENST00000402219|SOS1	REV__ENSG00000115904|ENST00000402219|SOS1	MULTI-SECPEP	A375_MHC_IP_R2	2	517.6506958007812	2	517.766906	1033.51926	-0.6648	-0.00034421	-2.7499	-0.0014238	-3.4147	-0.001768	517.7664274629957	27.525	0.35619	28.204	27.895	28.251	0.67857					9	6	2	0	0	0	0.90513	1	9357	9357		8.1555	6.6736	1	1570400	+		48174	17922	34978	35264	47084	47084					0.0038398192079966975
SHCYCCRCC	9	Unmodified	_SHCYCCRCC_					0	0	0		ENST00000414347.5_1_22:37771936-37814940:-|nuORF;ENST00000435824.5_1_22:37771936-37816401:-|nuORF	ENST00000414347.5_1_22:37771936-37814940:-|nuORF	ENST00000414347.5_1_22:37771936-37814940:-|nuORF	MSMS	A375_MHC_IP_R2	2	539.5108032226562	2	539.16321	1076.31187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.505	1	18.101	17.601	18.601	0.59616								0	0	0	0.15486	1	5151	5151		0	0	1				48175	11666	34979	35265	47085	47085					-0.22323654478054777
SHCYCDCCH	9	Unmodified	_SHCYCDCCH_					0	0	0			REV__ENST00000471987.1_1_1:207958419-207959036:+|nuORF	REV__ENST00000471987.1_1_1:207958419-207959036:+|nuORF	MSMS	A375_MHC_IP_R1	1	357.4490966796875	3	357.436419	1069.28743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.643	1	20.643	20.143	21.143	0								0	0	0	0.15486	1	5329	5329		0	0	1		+		48176	23950	34980	35266	47086	47086					-0.2444459135992929
SHDPCGCC	8	Unmodified	_SHDPCGCC_					0	0	0		ENSG00000170464|ENST00000302060|DNAJC18	ENSG00000170464|ENST00000302060|DNAJC18	ENSG00000170464|ENST00000302060|DNAJC18	MULTI-SECPEP	A375_MHC_IP_R1	1	821.6365966796875	1	821.237505	820.230229	-0.73488	-0.00060351	0.23274	0.00019114	-0.50214	-0.00041238	821.2377825178671	146.05	0.065674	146.05	146.02	146.09	0					9	6	2	0	0	0	0.972	1	55906	55906		0	0	1	120080			48177	7509	34981	35267	47087	47087					-0.1870769057399002
SHDPCGCC	8	Unmodified	_SHDPCGCC_					0	0	0		ENSG00000170464|ENST00000302060|DNAJC18	ENSG00000170464|ENST00000302060|DNAJC18	ENSG00000170464|ENST00000302060|DNAJC18	MULTI-MSMS	A375_MHC_IP_R2	2	821.6370239257812	1	821.237505	820.230229	-0.62559	-0.00051376	0.43683	0.00035874	-0.18876	-0.00015502	821.2374990838334	146.08	0.11501	146.1	146.04	146.15	0.021408					31	14	3	0	0	0	0.77861	1	56918	56918		0	0	1	583420			48178	7509	34981	35267	47088	47088					-0.1870769057399002
SHDSNLLKFY	10	Unmodified	_SHDSNLLKFY_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MSMS	A375_MHC_IP_R1	1	612.2056884765625	2	612.306395	1222.59824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.079	1	45.079	44.579	45.579	0								0	0	0	0.15435	1	15759	15759		6.7232	0	1		+		48179	19422	34982	35268	47089	47089					-0.004157908448860326
SHFILSYL	8	Unmodified	_SHFILSYL_					0	0	0		ENST00000262059.8_1_12:54105502-54105616:-|nuORF	ENST00000262059.8_1_12:54105502-54105616:-|nuORF	ENST00000262059.8_1_12:54105502-54105616:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	490.6658935546875	2	490.26601	978.517468	-0.23014	-0.00011283	-0.019077	-9.3529E-06	-0.24922	-0.00012218	490.2659299299532	88.24	1.2726	88.24	87.898	89.171	0					67	24	4	0	0	0	0.32803	1	32570	32570		56.541	0.49296	1	25711000			48180	10291	34983	35269	47090	47090					0.027349729028628644
SHFLQIMINA	10	Unmodified	_SHFLQIMINA_					0	0	0		ENST00000360416.7_1_17:8378590-8378773:-|nuORF	ENST00000360416.7_1_17:8378590-8378773:-|nuORF	ENST00000360416.7_1_17:8378590-8378773:-|nuORF	MSMS	A375_MHC_IP_R2	2	391.8417663574219	3	391.874348	1172.60121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.917	1	19.52	19.02	20.02	0.60308								0	0	0	0.15435	1	5654	5654		3.5871	0.26742	1				48181	11028	34984	35270	47091	47091					0.0218176100825076
SHGEGNHIY	9	Unmodified	_SHGEGNHIY_					0	0	0		nc|ENSG00000138794|P55212-2|CASP6;ENSG00000138794|ENST00000265164|CASP6	nc|ENSG00000138794|P55212-2|CASP6	nc|ENSG00000138794|P55212-2|CASP6	MULTI-SECPEP	A375_MHC_IP_R1	1	508.00665283203125	2	507.225405	1012.43626	-0.39223	-0.00019895	-3.8384	-0.0019469	-4.2306	-0.0021459	507.2248535998662	43.753	0.45694	43.753	43.553	44.01	0					12	8	2	0	0	0	0.76827	1	15266	15266		6.7232	0	1	937960			48182	5036	34985	35271	47092	47092					-0.06946334807196308
SHGGGSGF	8	Unmodified	_SHGGGSGF_					0	0	0		ENSG00000171403|ENST00000246662|KRT9;CON__P35527	ENSG00000171403|ENST00000246662|KRT9	ENSG00000171403|ENST00000246662|KRT9	MULTI-SECPEP	A375_MHC_IP_R2	2	705.0011596679688	1	705.295079	704.287802	-0.71543	-0.00050459	-2.9089	-0.0020516	-3.6243	-0.0025562	705.2968056966268	123.5	0.25146	123.87	123.73	123.98	0.3766					5	4	2	0	0	0	0.972	1	47508	47508		0	0	1	5004400		+	48183	600	34986	35272	47093	47093					-0.07617020990232959
SHGKDTKVL	9	Unmodified	_SHGKDTKVL_					0	0	0		nc|ENSG00000205754|G3V0H7|SLCO1B7;nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7;nc|ENSG00000111700|Q9NPD5-2|SLCO1B3	nc|ENSG00000205754|G3V0H7|SLCO1B7	nc|ENSG00000205754|G3V0H7|SLCO1B7	MULTI-SECPEP	A375_MHC_IP_R2	2	493.1769104003906	2	492.777274	983.539994	-0.32092	-0.00015814	-0.25058	-0.00012348	-0.57151	-0.00028163	492.77710883707186	43.702	0.6553	44.471	44.177	44.833	0.7691					36	12	4	0	0	0	0.39388	1	16246	16246		25.399	0	1	17833000			48184	14543	34987	35273	47094	47094					0.04756572300470907
SHGSGGGGGG	10	Unmodified	_SHGSGGGGGG_					0	0	0		ENSG00000163214|ENST00000457308|DHX57;nc|ENSG00000163214|Q6P158-2|DHX57;DHX57|p.K754Afs*7|1|0.19|ENSG00000163214|chr2:38843139-38843170|CTTGCTTTAAGCTTTTCCTTTGAAATCTGTTT/-|frameshift_variant	ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MULTI-SECPEP	A375_MHC_IP_R1	1	729.789306640625	1	729.291056	728.283779	-0.4117	-0.00030025	0.73764	0.00053795	0.32594	0.00023771	729.2949889178259	125.93	0.19964	125.93	125.8	126	0					5	3	2	0	0	0	0.95069	1	47980	47980		0	0	1	2676900			48185	6638	34988	35274	47095	47095					-0.09123110483938035
SHHNIHSFYIR	11	Unmodified	_SHHNIHSFYIR_					0	0	0			REV__ENST00000484514.1_1_3:78734943-78737853:-|nuORF	REV__ENST00000484514.1_1_3:78734943-78737853:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	471.3055725097656	3	470.905698	1409.69527	-0.54636	-0.00025728	-0.25705	-0.00012105	-0.80341	-0.00037833	470.905852822593	132.27	1.0172	132.46	132.05	133.07	0.18953					58	19	4	0	0	0	0.7342	1	52053	52053		4.1166	1.8639	1	5344500	+		48186	25299	34989	35275	47096	47096					0.006806161547501688
SHHRRHRFHRR	11	Unmodified	_SHHRRHRFHRR_					0	0	0		LCE1D|p.S81F|1|0.44|ENSG00000172155|chr1:152798036-152798036|C/T|missense_variant	LCE1D|p.S81F|1|0.44|ENSG00000172155|chr1:152798036-152798036|C/T|missense_variant	LCE1D|p.S81F|1|0.44|ENSG00000172155|chr1:152798036-152798036|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	791.8330078125	2	791.433381	1580.85221	-0.9205	-0.00072852	0.18806	0.00014884	-0.73244	-0.00057968	791.4335734040359	63.261	0.71178	64.002	63.632	64.344	0.74073					30	13	3	0	0	0	0.73925	1	23947	23947		0.30703	0.30703	1	8072800			48187	14286	34990	35276	47097	47097					0.08501758608281307
SHKDLLSGL	9	Unmodified	_SHKDLLSGL_					0	0	0		ENSG00000093167|ENST00000336686|LRRFIP2	ENSG00000093167|ENST00000336686|LRRFIP2	ENSG00000093167|ENST00000336686|LRRFIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	485.6606140136719	2	485.271824	968.529095	-0.24021	-0.00011657	-0.53644	-0.00026032	-0.77665	-0.00037689	485.27153370106663	63.64	1.017	63.64	63.326	64.343	0					22	19	2	0	0	0	0.65246	1	23072	23072		15.847	0	1	946600			48188	2021	34991	35277	47098	47098					0.04357169926197457
SHKWLKLKR	9	Unmodified	_SHKWLKLKR_					0	0	0			REV__ENSG00000101825|ENST00000217939|MXRA5	REV__ENSG00000101825|ENST00000217939|MXRA5	MSMS	A375_MHC_IP_R1	1	399.65081787109375	3	399.252258	1194.73495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.6042	1	9.6042	9.1042	10.104	0								0	0	0	0.15486	1	2196	2196		0.26902	0	1		+		48189	17186	34992	35278	47099	47099					0.14536787896099668
SHLCVIGLVY	10	Unmodified	_SHLCVIGLVY_					0	0	0		ENSG00000180658|ENST00000315453|OR2A4	ENSG00000180658|ENST00000315453|OR2A4	ENSG00000180658|ENST00000315453|OR2A4	MULTI-SECPEP	A375_MHC_IP_R2	2	552.695556640625	2	552.299527	1102.5845	-0.79264	-0.00043778	-3.7713	-0.0020829	-4.564	-0.0025207	552.2960294565706	45.602	0.85763	46.367	45.846	46.704	0.76518					31	16	4	0	0	0	0.2728	1	17062	17062		48.346	17.709	1	6075600			48190	8308	34993	35279	47100	47100					0.03731260122299318
SHLIWYCLW	9	Unmodified	_SHLIWYCLW_					0	0	0			REV__nc|ENSG00000257365|P49356-2|FNTB	REV__nc|ENSG00000257365|P49356-2|FNTB	MULTI-SECPEP	A375_MHC_IP_R1	1	611.092529296875	2	610.799694	1219.58484	-0.073877	-4.5124E-05	0.98212	0.00059988	0.90824	0.00055475	611.3020086534377	108.28	0.55817	108.28	107.95	108.51	0					13	10	2	0	0	0	0.75466	1	39614	39614		12.532	0.29089	1	2137600	+		48191	22891	34994	35280	47101	47101					-0.016173201578567387
SHLLQYTKIQ	10	Unmodified	_SHLLQYTKIQ_					0	0	0			REV__nc|ENSG00000129493|Q86XA9|HEATR5A	REV__nc|ENSG00000129493|Q86XA9|HEATR5A	MSMS	A375_MHC_IP_R1	1	410.9352111816406	3	410.89955	1229.67682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.465	1	23.465	22.965	23.965	0								0	0	0	0.15397	1	6445	6445		7.9454	0.46833	1		+		48192	18494	34995	35281	47102	47102					0.07117061460189689
SHLLRYTSL	9	Unmodified	_SHLLRYTSL_					0	0	0			REV__ENSG00000197272|ENST00000356897|IL27	REV__ENSG00000197272|ENST00000356897|IL27	MULTI-SECPEP	A375_MHC_IP_R1	1	363.2852783203125	3	363.873224	1088.59784	0.0023329	8.4888E-07	0.18743	6.82E-05	0.18976	6.9049E-05	363.8729985277425	32.459	0.55909	32.459	32.075	32.634	0					15	10	2	0	0	0	0.58271	1	10412	10412		19.362	7.1213	1	2913400	+		48193	22273	34996	35282	47103	47103					0.057088342259021374
SHLLTYLCN	9	Unmodified	_SHLLTYLCN_					0	0	0			REV__ENST00000445430.5_1_3:195412816-195412894:+|nuORF	REV__ENST00000445430.5_1_3:195412816-195412894:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	355.4599304199219	3	355.179548	1062.51682	-0.092749	-3.2943E-05	-0.15341	-5.4487E-05	-0.24616	-8.7429E-05	355.17945092140593	36.393	1.1679	36.393	35.727	36.895	0					34	22	2	0	0	0	0.69674	1	12127	12127		4.5289	1.2092	1	1539900	+		48194	24844	34997	35283	47104	47104					-0.011941898085296998
SHLNLKEWET	10	Unmodified	_SHLNLKEWET_					0	0	0			REV__nc|ENSG00000198947|P11532-4|DMD	REV__nc|ENSG00000198947|P11532-4|DMD	MULTI-MSMS	A375_MHC_IP_R1	1	419.94683837890625	3	419.547177	1255.6197	-0.14854	-6.232E-05	-0.26099	-0.0001095	-0.40953	-0.00017182	419.54697700223875	25.987	0.75996	25.987	25.562	26.322	0					26	14	3	0	0	0	0.70442	1	7740	7740		10.315	1.8709	1	4454300	+		48195	22456	34998	35284	47105	47105					0.002115941838155777
SHLRYNWC	8	Unmodified	_SHLRYNWC_					0	0	0			REV__nc|ENSG00000189050|Q5M7Z0-3|RNFT1	REV__nc|ENSG00000189050|Q5M7Z0-3|RNFT1	MULTI-MSMS	A375_MHC_IP_R1	1	1078.384521484375	1	1078.48871	1077.48143	-0.24091	-0.00025982	-1.8649	-0.0020113	-2.1058	-0.0022711	1078.4863010127347	142.17	0.30513	142.17	141.98	142.29	0					6	5	2	0	0	0	0.77797	1	54575	54575		2.3027	0	1	896380	+		48196	27431	34999	35285	47106	47106					-0.05420807545669959
SHLSLFHGSRE	11	Unmodified	_SHLSLFHGSRE_					0	0	0		ENSG00000235711|ENST00000421388|ANKRD34C	ENSG00000235711|ENST00000421388|ANKRD34C	ENSG00000235711|ENST00000421388|ANKRD34C	MULTI-SECPEP	A375_MHC_IP_R1	1	423.6228332519531	3	423.882671	1268.62618	-0.22066	-9.3535E-05	-0.92834	-0.00039351	-1.149	-0.00048704	423.8825232562004	24.473	0.35067	24.473	24.347	24.698	0					8	6	2	0	0	0	0.94168	1	7020	7020		5.8681	0.82062	1	4961700			48197	9746	35000	35286	47107	47107					0.002615321351640887
SHLTQFVKY	9	Unmodified	_SHLTQFVKY_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-SECPEP	A375_MHC_IP_R1	1	374.60089111328125	3	374.869591	1121.58694	0.61256	0.00022963	-0.089717	-3.3632E-05	0.52285	0.000196	375.2038684775674	21.631	0.25309	21.631	21.555	21.808	0					6	4	2	0	0	0	0.78348	1	5728	5728		2.4985	1.8008	1	661130	+		48198	22284	35001	35287	47108	47108					0.031014318516326966
SHLTSDIKLF	10	Unmodified	_SHLTSDIKLF_					0	0	0			REV__SEL1L3|p.E1009K|1|0.47|ENSG00000091490|chr4:25758999-25758999|C/T|missense_variant	REV__SEL1L3|p.E1009K|1|0.47|ENSG00000091490|chr4:25758999-25758999|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	580.651611328125	2	580.819138	1159.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.315	1	91.315	90.815	91.815	0								0	0	0	0.15417	1	33553	33553		7.2892	0	1		+		48199	27936	35002	35288	47109	47109					0.050296836775032716
SHLYSAWGS	9	Unmodified	_SHLYSAWGS_					0	0	0			REV__ENSG00000135968|ENST00000309863|GCC2	REV__ENSG00000135968|ENST00000309863|GCC2	MULTI-MSMS	A375_MHC_IP_R1	1	504.6319885253906	2	504.232699	1006.45084	-0.15408	-7.7693E-05	-0.472	-0.000238	-0.62608	-0.00031569	504.2323480998117	111.7	0.56132	111.7	111.46	112.03	0					23	10	3	0	0	0	0.6898	1	40950	40950		7.9102	0	1	2089900	+		48200	18905	35003	35289	47110	47110					-0.05212262659040334
SHNRQYEIP	9	Unmodified	_SHNRQYEIP_					0	0	0			REV__nc|ENSG00000038382|O75962-2|TRIO	REV__nc|ENSG00000038382|O75962-2|TRIO	MSMS	A375_MHC_IP_R2	2	381.80914306640625	3	381.856233	1142.54687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.246	1	16.834	16.334	17.334	0.58774								0	0	0	0.15486	1	4824	4824		0.23584	0	1		+		48201	16328	35004	35290	47111	47111					-0.018701148189620653
SHPGSRHPCGT	11	Unmodified	_SHPGSRHPCGT_					0	0	0			REV__ENSG00000160200|ENST00000398165|CBS	REV__ENSG00000160200|ENST00000398165|CBS	MSMS	A375_MHC_IP_R2	2	379.1213073730469	3	379.173568	1134.49887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.32	1	142.35	141.85	142.85	0.030731								0	0	0	0.16302	1	55638	55638		1.2148	0.4383	1		+		48202	20152	35005	35291	47112	47112					-0.06299512010650687
SHQLCRDRCV	10	Unmodified	_SHQLCRDRCV_					0	0	0			REV__nc|ENSG00000160223|O75144-3|ICOSLG	REV__nc|ENSG00000160223|O75144-3|ICOSLG	MSMS	A375_MHC_IP_R1	1	608.687255859375	2	608.787324	1215.56009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.242	1	75.242	74.742	75.742	0								0	0	0	0.15353	1	27413	27413		9.3831	0	1		+		48203	20155	35006	35292	47113	47113					-0.03906323302862802
SHRGRNVLTAI	11	Unmodified	_SHRGRNVLTAI_					0	0	0		nc|ENSG00000160226|O43822-2|CFAP410;nc|ENSG00000160226|O43822-3|CFAP410;ENSG00000160226|ENST00000339818|CFAP410	nc|ENSG00000160226|O43822-2|CFAP410	nc|ENSG00000160226|O43822-2|CFAP410	MSMS	A375_MHC_IP_R2	2	612.4188842773438	2	612.352003	1222.68945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.69	1	136.81	136.31	137.31	0.11134								0	0	0	0.16273	1	53683	53683		4.5289	1.5336	1				48204	6409	35007	35293	47114	47114					0.08701517643089574
SHRHCPDSL	9	Unmodified	_SHRHCPDSL_					0	0	0		CABP4|p.R100C|3|0.4|ENSG00000175544|chr11:67455721-67455721|C/T|missense_variant	CABP4|p.R100C|3|0.4|ENSG00000175544|chr11:67455721-67455721|C/T|missense_variant	CABP4|p.R100C|3|0.4|ENSG00000175544|chr11:67455721-67455721|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	526.1580810546875	2	526.240532	1050.46651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.64	1	102.64	102.14	103.14	0								0	0	0	0.15069	1	37722	37722		20.454	4.6064	1				48205	272	35008	35294	47115	47115					-0.05670299413668545
SHRRQMKRLV	10	Unmodified	_SHRRQMKRLV_					0	0	0			REV__nc|ENSG00000135119|Q96EX2-2|RNFT2	REV__nc|ENSG00000135119|Q96EX2-2|RNFT2	MSMS	A375_MHC_IP_R1	1	437.657470703125	3	437.591057	1309.75134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.72	1	137.72	137.22	138.22	0								0	0	0	0.15596	1	53002	53002		0.62683	0	1		+		48206	18825	35009	35295	47116	47116					0.10885545790574724
SHSIMRPL	8	Unmodified	_SHSIMRPL_					0	0	0			REV__nc|ENSG00000226278|O15172|PSPHP1	REV__nc|ENSG00000226278|O15172|PSPHP1	MULTI-MSMS	A375_MHC_IP_R1	1	470.6717224121094	2	470.755287	939.496021	-0.39099	-0.00018406	-0.19453	-9.1578E-05	-0.58552	-0.00027564	470.7550712302326	34.095	0.50584	34.095	33.848	34.353	0					16	9	2	0	0	0	0.70206	1	11258	11258		34.102	3.8776	1	3440300	+		48207	27506	35010	35296	47117	47117					0.023852646024920432
SHSIMRPL	8	Unmodified	_SHSIMRPL_					0	0	0			REV__nc|ENSG00000226278|O15172|PSPHP1	REV__nc|ENSG00000226278|O15172|PSPHP1	MULTI-SECPEP	A375_MHC_IP_R1	1	471.1549987792969	2	470.755287	939.496021	-0.39099	-0.00018406	-0.19453	-9.1578E-05	-0.58552	-0.00027564	470.7550712302326	34.095	0.50584	34.095	33.848	34.353	0					16	9	2	0	0	0	0.19796	1	11192	11192		92.822	31.465	1	3440300	+		48208	27506	35010	35296	47118	47118					0.023852646024920432
SHSIMRPL	8	Unmodified	_SHSIMRPL_					0	0	0			REV__nc|ENSG00000226278|O15172|PSPHP1	REV__nc|ENSG00000226278|O15172|PSPHP1	MULTI-SECPEP	A375_MHC_IP_R2	2	471.155029296875	2	470.755287	939.496021	-0.80518	-0.00037904	0.10084	4.747E-05	-0.70434	-0.00033157	470.75534524022436	33.181	0.56045	33.934	33.686	34.247	0.75225					17	10	2	0	0	0	0.22702	1	11875	11875		85.357	30.583	1	4543400	+		48209	27506	35010	35296	47119	47119					0.023852646024920432
SHSLFIRAIL	10	Unmodified	_SHSLFIRAIL_					0	0	0		BCHE|p.T246I|1|0.09|ENSG00000114200|chr3:165830297-165830297|G/A|missense_variant	BCHE|p.T246I|1|0.09|ENSG00000114200|chr3:165830297-165830297|G/A|missense_variant	BCHE|p.T246I|1|0.09|ENSG00000114200|chr3:165830297-165830297|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	386.58050537109375	3	386.232752	1155.67643	-0.42581	-0.00016446	0.25014	9.6611E-05	-0.17567	-6.785E-05	386.2328094605883	23.474	0.40439	24.104	23.878	24.283	0.63014					10	7	2	0	0	0	0.71245	1	7542	7542		3.5871	1.5011	1	2630100			48210	228	35011	35297	47120	47120					0.10481686530988554
SHSMLRRW	8	Unmodified	_SHSMLRRW_					0	0	0			REV__ENST00000254480.9_1_3:47787415-47787478:-|nuORF	REV__ENST00000254480.9_1_3:47787415-47787478:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	537.2113037109375	2	536.777085	1071.53962	-0.88534	-0.00047523	-3.3182	-0.0017811	-4.2036	-0.0022564	536.7749054393146	90.439	0.50826	90.439	90.133	90.641	0					13	9	2	0	0	0	0.972	1	33162	33162		12.532	0	1	1029500	+		48211	23139	35012	35298	47121	47121					0.006708740996373308
SHSPSQPDAA	10	Unmodified	_SHSPSQPDAA_					0	0	0		ENSG00000198919|ENST00000361582|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	MULTI-SECPEP	A375_MHC_IP_R1	1	498.6349792480469	2	498.722695	995.430838	-0.37821	-0.00018862	-0.88385	-0.0004408	-1.2621	-0.00062942	498.7223737036946	75.042	0.45491	75.042	74.857	75.312	0					11	8	2	0	0	0	0.91909	1	27366	27366		13.906	8.1742	1	1082000			48212	9371	35013	35299	47122	47122					-0.06706058389670488
SHSPSQPDAA	10	Unmodified	_SHSPSQPDAA_					0	0	0		ENSG00000198919|ENST00000361582|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	MULTI-MSMS	A375_MHC_IP_R2	2	498.6551513671875	2	498.722695	995.430838	-0.55768	-0.00027813	-0.29374	-0.00014649	-0.85142	-0.00042462	498.72255629316766	74.333	0.60863	75.071	74.757	75.365	0.73752					12	11	2	0	0	0	0.69306	1	28276	28276		13.906	5.3128	1	1042300			48213	9371	35013	35299	47123	47123					-0.06706058389670488
SHTCFLWYY	9	Unmodified	_SHTCFLWYY_					0	0	0		nc|ENSG00000179397|Q5SY80-2|CATSPERE;ENSG00000179397|ENST00000366534|CATSPERE;ENST00000478554.5_1_1:244624707-244662379:+|nuORF	nc|ENSG00000179397|Q5SY80-2|CATSPERE	nc|ENSG00000179397|Q5SY80-2|CATSPERE	MULTI-MSMS	A375_MHC_IP_R2	2	610.66552734375	2	610.265684	1218.51682	-0.82794	-0.00050526	0.55516	0.00033879	-0.27278	-0.00016647	610.2663371733939	58.67	0.4061	59.418	59.237	59.643	0.7488					13	7	2	0	0	0	0.72507	1	22230	22230		4.756	0.22714	1	1633300			48214	8227	35014	35300	47124	47124					-0.08370189808510986
SHTWIQISALL	11	Unmodified	_SHTWIQISALL_					0	0	0		chr14:35294529-35307994|317|25.48|0.0|21.28|+|2|TE_info:MIR,MIR_dup134546,MIR,SINE,donor,+,35294443,35294529|None,PSMA6|1	chr14:35294529-35307994|317|25.48|0.0|21.28|+|2|TE_info:MIR,MIR_dup134546,MIR,SINE,donor,+,35294443,35294529|None,PSMA6|1	chr14:35294529-35307994|317|25.48|0.0|21.28|+|2|TE_info:MIR,MIR_dup134546,MIR,SINE,donor,+,35294443,35294529|None,PSMA6|1	MULTI-MSMS	A375_MHC_IP_R2	2	423.97100830078125	3	423.571434	1267.69247	-0.42349	-0.00017938	-0.54923	-0.00023264	-0.97271	-0.00041201	423.5711430602054	23.646	0.35551	24.276	24.079	24.435	0.63014					12	6	2	0	0	0	0.73439	1	7666	7666		4.7159	0.83959	1	4178200			48215	434	35015	35301	47125	47125					0.06933347977269477
SHVPLYPN	8	Unmodified	_SHVPLYPN_					0	0	0		ENSG00000166959|ENST00000300226|MS4A8	ENSG00000166959|ENST00000300226|MS4A8	ENSG00000166959|ENST00000300226|MS4A8	MSMS	A375_MHC_IP_R1	1	463.6584777832031	2	463.74016	925.465767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.267	1	32.267	31.767	32.767	0								0	0	0	0.16876	1	10409	10409		12.532	0.89125	1				48216	7140	35016	35302	47126	47126					5.229208954915521E-05
SHYQHEQG	8	Unmodified	_SHYQHEQG_					0	0	0			REV__nc|ENSG00000163618|Q9ULU8-2|CADPS	REV__nc|ENSG00000163618|Q9ULU8-2|CADPS	MSMS	A375_MHC_IP_R2	2	493.2100524902344	2	493.209755	984.404957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.649	1	18.245	17.745	18.745	0.59616								0	0	0	0.16876	1	5201	5201		0.6015	0	1		+		48217	20385	35017	35303	47127	47127					-0.08786907841283664
SHYTCSFSY	9	Unmodified	_SHYTCSFSY_					0	0	0			REV__ENSG00000119913|ENST00000646139|TECTB	REV__ENSG00000119913|ENST00000646139|TECTB	MSMS	A375_MHC_IP_R1	1	547.6978759765625	2	547.716024	1093.4175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.896	1	81.896	81.396	82.396	0								0	0	0	0.15486	1	29935	29935		7.9102	0.62092	1		+		48218	18102	35018	35304	47128	47128					-0.12547632493260608
SIACGCYRCE	10	Unmodified	_SIACGCYRCE_					0	0	0			REV__ENSG00000100426|ENST00000216268|ZBED4	REV__ENSG00000100426|ENST00000216268|ZBED4	MULTI-MSMS	A375_MHC_IP_R2	2	553.1818237304688	2	552.717187	1103.41982	-0.85313	-0.00047154	-1.1445	-0.0006326	-1.9977	-0.0011041	552.7164297492849	106.81	0.71003	107.57	107.29	108	0.75977					20	13	2	0	0	0	0.70329	1	40479	40479		10.824	2.2306	1	1621100	+		48219	17091	35019	35305	47129	47129					-0.1277524335146154
SIADGFEPL	9	Unmodified	_SIADGFEPL_					0	0	0			REV__ENSG00000137076|ENST00000314888|TLN1	REV__ENSG00000137076|ENST00000314888|TLN1	MSMS	A375_MHC_IP_R1	1	474.7059326171875	2	474.737283	947.460012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.977	1	96.977	96.477	97.477	0								0	0	0	0.14359	1	35634	35634		28.487	5.3384	1		+		48220	18984	35020	35306	47130	47130					-0.015819140933786002
SIADKIQQI	9	Unmodified	_SIADKIQQI_					0	0	0		ENSG00000086189|ENST00000199320|DIMT1	ENSG00000086189|ENST00000199320|DIMT1	ENSG00000086189|ENST00000199320|DIMT1	MULTI-SECPEP	A375_MHC_IP_R1	1	508.2004089355469	2	508.292756	1014.57096	-0.45803	-0.00023282	0.070974	3.6076E-05	-0.38706	-0.00019674	508.29277651233076	58.252	0.81225	58.252	58.024	58.836	0					26	15	2	0	0	0	0.046478	1	20964	20964		82.529	0	1	11122000			48221	1830	35021	35307	47131	47131					0.06425725614712974
SIADKIQQI	9	Unmodified	_SIADKIQQI_					0	0	0		ENSG00000086189|ENST00000199320|DIMT1	ENSG00000086189|ENST00000199320|DIMT1	ENSG00000086189|ENST00000199320|DIMT1	MULTI-SECPEP	A375_MHC_IP_R2	2	508.21826171875	2	508.292756	1014.57096	-1.0765	-0.00054717	-0.12647	-6.4282E-05	-1.203	-0.00061145	508.2927439900728	57.497	0.76265	58.246	57.917	58.679	0.74894					31	14	4	0	0	0	0.022401	1	21752	21752		99.755	16.327	1	12103000			48222	1830	35021	35307	47132	47132					0.06425725614712974
SIAELLKEV	9	Unmodified	_SIAELLKEV_					0	0	0			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-SECPEP	A375_MHC_IP_R1	1	501.69744873046875	2	501.297507	1000.58046	-0.35449	-0.00017771	0.21254	0.00010655	-0.14195	-7.1161E-05	501.2975281002621	91.781	0.5564	91.781	91.554	92.11	0					15	10	2	0	0	0	0.20645	1	33785	33785		32.786	0	1	2027700	+		48223	18434	35022	35308	47133	47133					0.08019493900235375
SIAEVVHQL	9	Unmodified	_SIAEVVHQL_					0	0	0		ENSG00000178950|ENST00000314167|GAK;nc|ENSG00000178950|O14976-2|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF	ENSG00000178950|ENST00000314167|GAK	ENSG00000178950|ENST00000314167|GAK	MULTI-MSMS	A375_MHC_IP_R1	1	498.6795654296875	2	498.279649	994.544745	-0.16736	-8.3392E-05	0.19163	9.5484E-05	0.024268	1.2092E-05	498.27962796030494	70.211	1.4768	70.211	69.529	71.005	0					49	28	2	0	0	0	0.11629	1	25419	25419		47.749	9.7747	1	24650000			48224	8189	35023	35309	47134	47134					0.04725456443236453
SIAEVVHQL	9	Unmodified	_SIAEVVHQL_					0	0	0		ENSG00000178950|ENST00000314167|GAK;nc|ENSG00000178950|O14976-2|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF	ENSG00000178950|ENST00000314167|GAK	ENSG00000178950|ENST00000314167|GAK	MULTI-MSMS	A375_MHC_IP_R2	2	498.6796569824219	2	498.279649	994.544745	-0.42303	-0.00021079	-0.057058	-2.8431E-05	-0.48009	-0.00023922	498.27953565812203	69.272	1.5236	70.006	69.474	70.997	0.73421					54	29	2	0	0	0	0.6324	1	26429	26429		13.042	1.4022	1	31023000			48225	8189	35023	35309	47135	47135					0.04725456443236453
SIAKHTSLF	9	Unmodified	_SIAKHTSLF_					0	0	0			REV__ENSG00000280236|ENST00000642051|OR12D2	REV__ENSG00000280236|ENST00000642051|OR12D2	MULTI-SECPEP	A375_MHC_IP_R2	2	502.6816711425781	2	502.282192	1002.54983	-0.63442	-0.00031866	0.32181	0.00016164	-0.31261	-0.00015702	502.2823291830245	75.533	0.40965	76.274	76.078	76.487	0.74052					10	7	2	0	0	0	0.63327	1	28723	28723		18.146	3.3081	1	1358500	+		48226	22989	35024	35310	47136	47136					0.04865760305870026
SIAKKPNLLL	10	Unmodified	_SIAKKPNLLL_					0	0	0			REV__USP26|p.L364P|1|0.1|ENSG00000134588|chrX:133027130-133027130|A/G|missense_variant	REV__USP26|p.L364P|1|0.1|ENSG00000134588|chrX:133027130-133027130|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	549.2578125	2	548.858067	1095.70158	-0.49688	-0.00027272	0.26608	0.00014604	-0.2308	-0.00012668	548.8582804637589	102.95	0.50913	102.95	102.61	103.12	0					27	9	4	0	0	0	0.37864	1	37785	37785		53.833	4.2785	1	3840400	+		48227	28967	35025	35311	47137	47137					0.15755741333555306
SIAKKPNLLL	10	Unmodified	_SIAKKPNLLL_					0	0	0			REV__USP26|p.L364P|1|0.1|ENSG00000134588|chrX:133027130-133027130|A/G|missense_variant	REV__USP26|p.L364P|1|0.1|ENSG00000134588|chrX:133027130-133027130|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	549.2579345703125	2	548.858067	1095.70158	-0.73015	-0.00040075	0.24786	0.00013604	-0.48229	-0.00026471	548.858226572479	101.78	0.55975	102.54	102.26	102.82	0.76428					23	10	3	0	0	0	0.51493	1	38581	38581		45.7	3.7441	1	5947100	+		48228	28967	35025	35311	47138	47138					0.15755741333555306
SIAMRTDVP	9	Unmodified	_SIAMRTDVP_					0	0	0		tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	MSMS	A375_MHC_IP_R1	1	495.18145751953125	2	495.257859	988.501166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.507	1	82.507	82.007	83.007	0								0	0	0	0.13805	1	30172	30172		30.225	1.738	1				48229	29463	35026	35312	47139	47139					0.006455236744500326
SIAPILAEA	9	Unmodified	_SIAPILAEA_					0	0	0		nc|ENSG00000160688|Q8NFF5-4|FLAD1;nc|ENSG00000160688|Q8NFF5-5|FLAD1;nc|ENSG00000160688|Q8NFF5-3|FLAD1;nc|ENSG00000160688|Q8NFF5-2|FLAD1;ENSG00000160688|ENST00000292180|FLAD1	nc|ENSG00000160688|Q8NFF5-4|FLAD1	nc|ENSG00000160688|Q8NFF5-4|FLAD1	MULTI-MSMS	A375_MHC_IP_R2	2	884.8147583007812	1	884.50876	883.501483	-0.27709	-0.00024509	0.12843	0.0001136	-0.14865	-0.00013149	884.5089253933234	94.504	0.40606	95.249	95.02	95.426	0.74474					12	7	2	0	0	0	0.021889	1	35935	35935		81.89	20.533	1	2289400			48230	6432	35027	35313	47140	47140					0.055072666659384595
SIAPILAEA	9	Unmodified	_SIAPILAEA_					0	0	0		nc|ENSG00000160688|Q8NFF5-4|FLAD1;nc|ENSG00000160688|Q8NFF5-5|FLAD1;nc|ENSG00000160688|Q8NFF5-3|FLAD1;nc|ENSG00000160688|Q8NFF5-2|FLAD1;ENSG00000160688|ENST00000292180|FLAD1	nc|ENSG00000160688|Q8NFF5-4|FLAD1	nc|ENSG00000160688|Q8NFF5-4|FLAD1	MULTI-MATCH	A375_MHC_IP_R1	1		1	884.50876	883.501483	-0.33174	-0.00029343	0.079065	6.9934E-05	-0.25268	-0.0002235	884.508889343292	95.338	0.5051	95.338	95.109	95.614	0	0.044442	-1.6304E-05	NaN	81.89	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2107700			48231	6432	35027	35313							0.055072666659384595
SIAPTKPQKL	10	Unmodified	_SIAPTKPQKL_					0	0	0		ENST00000522092.5_2_8:772178-1087480:+|nuORF	ENST00000522092.5_2_8:772178-1087480:+|nuORF	ENST00000522092.5_2_8:772178-1087480:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	361.6288757324219	3	361.557125	1081.64954	-0.50229	-0.00018161	0.8075	0.00029196	0.30521	0.00011035	361.5574804586348	61.3	0.25293	62.045	61.919	62.172	0.74503					5	4	2	0	0	0	0.81654	1	23242	23242		11.518	0	1	666980			48232	13020	35028	35314	47141	47141					0.1119857791979939
SIAQISASDP	10	Unmodified	_SIAQISASDP_					0	0	0		nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2;ENSG00000253910|ENST00000522605|PCDHGB2	nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	MULTI-MSMS	A375_MHC_IP_R2	2	494.707763671875	2	494.750921	987.48729	-0.64555	-0.00031939	-0.073385	-3.6307E-05	-0.71893	-0.00035569	494.750887176119	65.602	0.55898	66.341	66.018	66.577	0.73811					21	10	3	0	0	0	0.63639	1	24878	24878		18.146	1.2041	1	2272300			48233	9871	35029	35315	47142	47142					-0.0069543055299163825
SIAQSFNVHY	10	Unmodified	_SIAQSFNVHY_					0	0	0			REV__ENSG00000050344|ENST00000056233|NFE2L3	REV__ENSG00000050344|ENST00000056233|NFE2L3	MULTI-SECPEP	A375_MHC_IP_R1	1	388.6236572265625	3	389.192734	1164.55637	0.0029939	1.1652E-06	-0.89922	-0.00034997	-0.89622	-0.0003488	389.1923752669963	19.243	0.8085	19.243	19.221	20.03	0					20	17	2	0	0	0	0.92389	1	4663	4663		6.6304	0.43853	1	60722000	+		48234	16385	35030	35316	47143	47143					-0.01932346533430973
SIARKGVL	8	Unmodified	_SIARKGVL_					0	0	0			REV__ENST00000567241.5_1_16:85834811-85838551:+|nuORF	REV__ENST00000567241.5_1_16:85834811-85838551:+|nuORF	MSMS	A375_MHC_IP_R1	1	422.52099609375	2	422.27417	842.533787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.223	1	68.223	67.723	68.723	0								0	0	0	0.16876	1	24731	24731		12.532	0	1		+		48235	18591	35031	35317	47144	47144					0.10622098859630569
SIARTINEV	9	Unmodified	_SIARTINEV_					0	0	0		ENSG00000248746|ENST00000513398|ACTN3	ENSG00000248746|ENST00000513398|ACTN3	ENSG00000248746|ENST00000513398|ACTN3	MULTI-SECPEP	A375_MHC_IP_R2	2	502.1820068359375	2	501.782556	1001.55056	-0.50401	-0.0002529	-0.38421	-0.00019279	-0.88822	-0.00044569	501.7823906759943	43.094	0.75966	43.866	43.573	44.333	0.7724					24	14	2	0	0	0	0.46045	1	16085	16085		36.127	0	1	5135600			48236	9835	35032	35318	47145	47145					0.04984554954921805
SIASHAGI	8	Unmodified	_SIASHAGI_					0	0	0			REV__ENST00000422000.5_1_12:551432-551588:+|nuORF	REV__ENST00000422000.5_1_12:551432-551588:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	378.6056823730469	2	378.205953	754.397353	-0.32363	-0.0001224	0.15354	5.8071E-05	-0.17008	-6.4326E-05	378.20595075715903	25.509	0.76114	26.152	25.976	26.737	0.64368					24	14	3	0	0	0	0.91495	1	8563	8563		12.532	0	1	4973600	+		48237	24599	35033	35319	47146	47146					0.010329846291028844
SIASIPHLW	9	Unmodified	_SIASIPHLW_					0	0	0			REV__ENST00000420843.6_1_11:74976857-74977136:-|nuORF	REV__ENST00000420843.6_1_11:74976857-74977136:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	512.6836547851562	2	512.284734	1022.55492	-0.62137	-0.00031832	-1.3174	-0.00067489	-1.9388	-0.00099321	512.2842697829298	68.54	0.91328	68.54	68.006	68.92	0					23	17	2	0	0	0	0.3607	1	24888	24888		34.102	5.6156	1	1428600	+		48238	24576	35034	35320	47147	47147					0.044540641684761795
SIATLALAIRS	11	Unmodified	_SIATLALAIRS_					0	0	0			REV__ENSG00000167978|ENST00000301740|SRRM2	REV__ENSG00000167978|ENST00000301740|SRRM2	MSMS	A375_MHC_IP_R2	2	372.5970458984375	3	372.564279	1114.67101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.957	1	26.617	26.117	27.117	0.65992								0	0	0	0.16295	1	8729	8729		3.3557	0.036083	1		+		48239	20809	35035	35321	47148	47148					0.11825962948478264
SIAVHNEFF	9	Unmodified	_SIAVHNEFF_					0	0	0			REV__nc|ENSG00000271605|Q7Z6M3-3|MILR1	REV__nc|ENSG00000271605|Q7Z6M3-3|MILR1	MULTI-SECPEP	A375_MHC_IP_R2	2	355.5792541503906	3	355.178425	1062.51345	-0.38945	-0.00013832	1.2524	0.00044483	0.86297	0.00030651	355.1795205156217	30.107	2.3813	30.826	29.85	32.231	0.71857					72	46	2	0	0	0	0.75466	1	10901	10901		2.4985	0	1	2844300	+		48240	22946	35036	35322	47149	47149					-0.015311165908542534
SIAVLCICFF	10	Unmodified	_SIAVLCICFF_					0	0	0		ENSG00000197591|ENST00000355784|OR11L1	ENSG00000197591|ENST00000355784|OR11L1	ENSG00000197591|ENST00000355784|OR11L1	MULTI-MSMS	A375_MHC_IP_R2	2	559.716064453125	2	558.285031	1114.55551	-0.91223	-0.00050929	-0.60966	-0.00034036	-1.5219	-0.00084965	558.2846278200612	97.041	1.2166	97.797	97.368	98.585	0.75586					68	23	4	0	0	0	0.62155	1	36744	36744		19.257	1.1106	1	67312000			48241	9175	35037	35323	47150	47150					0.0028139950165950722
SICLGLAWGV	10	Unmodified	_SICLGLAWGV_					0	0	0		ENST00000394963.8_1_12:50492799-50492916:+|nuORF	ENST00000394963.8_1_12:50492799-50492916:+|nuORF	ENST00000394963.8_1_12:50492799-50492916:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	509.70367431640625	2	509.773145	1017.53174	-0.43485	-0.00022167	-0.85527	-0.000436	-1.2901	-0.00065767	510.27369260287014	75.568	0.25186	75.568	75.362	75.614	0					6	4	2	0	0	0	0.60556	1	27527	27527		20.454	4.6854	1	1345000			48242	11462	35038	35324	47151	47151					0.023673020594856098
SICLGRSN	8	Unmodified	_SICLGRSN_					0	0	0			REV__ENST00000494614.5_1_3:98520348-98531278:-|nuORF	REV__ENST00000494614.5_1_3:98520348-98531278:-|nuORF	MSMS	A375_MHC_IP_R1	1	425.134765625	2	425.215995	848.417436	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.554	1	72.554	72.054	73.054	0								0	0	0	0.16876	1	26399	26399		11.64	0	1		+		48243	25437	35039	35325	47152	47152					-0.012835877026077469
SICLKKFYY	9	Unmodified	_SICLKKFYY_					0	0	0			REV__ENST00000379066.5_1_2:37544226-37544932:-|nuORF	REV__ENST00000379066.5_1_2:37544226-37544932:-|nuORF	MSMS	A375_MHC_IP_R2	2	582.84130859375	2	582.809728	1163.6049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.93	1	95.678	95.178	96.178	0.74728								0	0	0	0.15486	1	36068	36068		11.64	1.5664	1		+		48244	24190	35040	35326	47153	47153					0.02964430782094496
SICNYYLNL	9	Unmodified	_SICNYYLNL_					0	0	0			REV__nc|ENSG00000112877|Q9P209-2|CEP72	REV__nc|ENSG00000112877|Q9P209-2|CEP72	MULTI-SECPEP	A375_MHC_IP_R1	1	368.27337646484375	3	368.179437	1101.51648	0.15872	5.8438E-05	-2.0752	-0.00076406	-1.9165	-0.00070563	368.17705215073147	52.703	0.45976	52.703	52.387	52.847	0					16	8	4	0	0	0	0.75466	1	18732	18732		2.4985	0	1	1764200	+		48245	17760	35041	35327	47154	47154					-0.030216095283776667
SICRNLKSIV	10	Unmodified	_SICRNLKSIV_					0	0	0		ENSG00000163013|ENST00000520530|FBXO41	ENSG00000163013|ENST00000520530|FBXO41	ENSG00000163013|ENST00000520530|FBXO41	MULTI-SECPEP	A375_MHC_IP_R1	1	378.9486083984375	3	378.221748	1131.64341	0.20572	7.7809E-05	0.12686	4.7982E-05	0.33259	0.00012579	378.22178795278023	47.013	0.71729	47.013	46.545	47.263	0					19	13	2	0	0	0	0.91556	1	16362	16362		5.7834	0	1	1968300			48246	6622	35042	35328	47155	47155					0.08285736416610234
SICWYKSMWH	10	Unmodified	_SICWYKSMWH_					0	0	0		ENST00000369498.7_1_X:154283071-154283149:+|nuORF	ENST00000369498.7_1_X:154283071-154283149:+|nuORF	ENST00000369498.7_1_X:154283071-154283149:+|nuORF	MSMS	A375_MHC_IP_R1	1	670.8494262695312	2	670.799368	1339.58418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.47	1	119.47	118.97	119.97	0								0	0	0	0.15435	1	44162	44162		6.7232	2.3939	1				48247	11133	35043	35329	47156	47156					-0.07202482869183768
SIDCKPPQDY	10	Unmodified	_SIDCKPPQDY_					0	0	0			REV__ENSG00000103489|ENST00000261381|XYLT1	REV__ENSG00000103489|ENST00000261381|XYLT1	MULTI-MSMS	A375_MHC_IP_R1	1	583.182373046875	2	583.263339	1164.51212	0.073795	4.3042E-05	-0.27753	-0.00016187	-0.20374	-0.00011883	583.2631465140161	44.423	0.56229	44.423	44.165	44.727	0					17	10	2	0	0	0	0.70496	1	15593	15593		10.074	0.6908	1	6581200	+		48248	17279	35044	35330	47157	47157					-0.0635511874193071
SIDDGLGSQY	10	Unmodified	_SIDDGLGSQY_					0	0	0		ENST00000569766.5_1_16:68118971-68260371:+|nuORF;ENST00000379165.8_1_16:68119584-68225707:+|nuORF;nc|ENSG00000072736|Q12968-6|NFATC3;nc|ENSG00000072736|Q12968-5|NFATC3;ENST00000563288.5_1_16:68120670-68248329:+|nuORF;nc|ENSG00000072736|Q12968-4|NFATC3;ENSG00000072736|ENST00000346183|NFATC3;ENST00000553077.5_1_16:68118971-68225707:+|nuORF;nc|ENSG00000072736|Q12968-2|NFATC3;nc|ENSG00000072736|Q12968-3|NFATC3;ENST00000563319.5_1_16:68118971-68248329:+|nuORF	ENST00000569766.5_1_16:68118971-68260371:+|nuORF	ENST00000569766.5_1_16:68118971-68260371:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	527.6692504882812	2	527.738011	1053.46147	-0.41143	-0.00021713	-0.015577	-8.2205E-06	-0.42701	-0.00022535	527.7381291116124	62.826	0.71812	62.826	62.505	63.223	0					17	13	2	0	0	0	0.6806	1	22677	22677		14.838	0.93222	1	727910			48249	1544	35045	35331	47158	47158					-0.06312324795271707
SIDDGLGSQY	10	Unmodified	_SIDDGLGSQY_					0	0	0		ENST00000569766.5_1_16:68118971-68260371:+|nuORF;ENST00000379165.8_1_16:68119584-68225707:+|nuORF;nc|ENSG00000072736|Q12968-6|NFATC3;nc|ENSG00000072736|Q12968-5|NFATC3;ENST00000563288.5_1_16:68120670-68248329:+|nuORF;nc|ENSG00000072736|Q12968-4|NFATC3;ENSG00000072736|ENST00000346183|NFATC3;ENST00000553077.5_1_16:68118971-68225707:+|nuORF;nc|ENSG00000072736|Q12968-2|NFATC3;nc|ENSG00000072736|Q12968-3|NFATC3;ENST00000563319.5_1_16:68118971-68248329:+|nuORF	ENST00000569766.5_1_16:68118971-68260371:+|nuORF	ENST00000569766.5_1_16:68118971-68260371:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1053.7996826171875	1	1054.46875	1053.46147	-0.10324	-0.00010887	-0.21355	-0.00022518	-0.31679	-0.00033405	1054.4686124331565	62.259	0.55772	63.002	62.673	63.23	0.74263					19	10	2	0	0	0	0.22444	1	23609	23609		69.338	29.389	1	3259900			48250	1544	35045	35331	47159	47159					-0.06312324795271707
SIDDGLGSQY	10	Unmodified	_SIDDGLGSQY_					0	0	0		ENST00000569766.5_1_16:68118971-68260371:+|nuORF;ENST00000379165.8_1_16:68119584-68225707:+|nuORF;nc|ENSG00000072736|Q12968-6|NFATC3;nc|ENSG00000072736|Q12968-5|NFATC3;ENST00000563288.5_1_16:68120670-68248329:+|nuORF;nc|ENSG00000072736|Q12968-4|NFATC3;ENSG00000072736|ENST00000346183|NFATC3;ENST00000553077.5_1_16:68118971-68225707:+|nuORF;nc|ENSG00000072736|Q12968-2|NFATC3;nc|ENSG00000072736|Q12968-3|NFATC3;ENST00000563319.5_1_16:68118971-68248329:+|nuORF	ENST00000569766.5_1_16:68118971-68260371:+|nuORF	ENST00000569766.5_1_16:68118971-68260371:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	1054.46875	1053.46147	0.24578	0.00025917	-0.24417	-0.00025747	0.0016071	1.6947E-06	1054.46850902647	62.783	0.61597	62.783	62.505	63.121	0	-0.10936	-2.0014E-05	NaN	69.338	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3487800			48251	1544	35045	35331							-0.06312324795271707
SIDDNAWAY	9	Unmodified	_SIDDNAWAY_					0	0	0			REV__ENSG00000182263|ENST00000333129|FIGN	REV__ENSG00000182263|ENST00000333129|FIGN	MULTI-SECPEP	A375_MHC_IP_R2	2	528.5216064453125	2	527.727446	1053.44034	-0.51493	-0.00027174	-2.5439	-0.0013425	-3.0589	-0.0016142	527.7233757470508	82.653	0.6057	83.396	83.042	83.648	0.74293					21	11	3	0	0	0	0.60012	1	31403	31403		7.9102	0	1	2350800	+		48252	21681	35046	35332	47160	47160					-0.08424290104130705
SIDDPVELN	9	Unmodified	_SIDDPVELN_					0	0	0			REV__nc|ENSG00000115355|Q3V6T2-5|CCDC88A	REV__nc|ENSG00000115355|Q3V6T2-5|CCDC88A	MSMS	A375_MHC_IP_R1	1	501.177734375	2	501.242929	1000.47131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.012	1	78.012	77.512	78.512	0								0	0	0	0.14359	1	28474	28474		28.487	2.1456	1		+		48253	17877	35047	35333	47161	47161					-0.028911367899013385
SIDDQSQQSY	10	Unmodified	_SIDDQSQQSY_					0	0	0		ENSG00000145817|ENST00000274496|YIPF5;nc|ENSG00000145817|Q969M3-3|YIPF5;ENST00000522203.5_1_5:143545115-143549519:-|nuORF;ENST00000508754.1_1_5:143543641-143549519:-|nuORF	ENSG00000145817|ENST00000274496|YIPF5	ENSG00000145817|ENST00000274496|YIPF5	MULTI-MSMS	A375_MHC_IP_R1	1	586.1488037109375	2	585.749107	1169.48366	-0.42512	-0.00024901	-0.027983	-1.6391E-05	-0.4531	-0.00026541	585.7490634505003	30.983	0.66018	30.983	30.754	31.414	0					30	12	3	0	0	0	8.3159E-11	2	9881	9881;10055		220.1	98.565	1	17854000			48254	5584	35048	35334	47162;47163	47162					-0.09430145117516986
SIDDQSQQSY	10	Unmodified	_SIDDQSQQSY_					0	0	0		ENSG00000145817|ENST00000274496|YIPF5;nc|ENSG00000145817|Q969M3-3|YIPF5;ENST00000522203.5_1_5:143545115-143549519:-|nuORF;ENST00000508754.1_1_5:143543641-143549519:-|nuORF	ENSG00000145817|ENST00000274496|YIPF5	ENSG00000145817|ENST00000274496|YIPF5	MULTI-MSMS	A375_MHC_IP_R2	2	586.148681640625	2	585.749107	1169.48366	-0.53152	-0.00031134	-0.13	-7.615E-05	-0.66153	-0.00038749	585.7490039204908	30.479	0.80749	31.197	30.962	31.77	0.71857					35	15	3	0	0	0	0.00034917	2	10696	10696;10789		151.48	36.743	1	14058000			48255	5584	35048	35334	47164;47165	47164					-0.09430145117516986
SIDEHATKY	9	Unmodified	_SIDEHATKY_					0	0	0			REV__ENST00000503074.1_1_5:35700583-35709228:+|nuORF	REV__ENST00000503074.1_1_5:35700583-35709228:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	532.6563110351562	2	532.256371	1062.49819	-0.50443	-0.00026848	-0.31493	-0.00016763	-0.81936	-0.00043611	532.2561350301484	105.61	1.8856	105.61	105.15	107.03	0					106	36	5	0	0	0	0.35581	1	38871	38871		26.884	26.884	1	99249000	+		48256	19809	35049	35335	47166	47166					-0.030560281787074928
SIDFENWGHF	10	Unmodified	_SIDFENWGHF_					0	0	0			REV__nc|ENSG00000017260|P98194-2|ATP2C1	REV__nc|ENSG00000017260|P98194-2|ATP2C1	MULTI-SECPEP	A375_MHC_IP_R1	1	626.3906860351562	2	626.275095	1250.53564	-0.54472	-0.00034114	1.2491	0.0007823	0.70441	0.00044116	626.77681355486	100.52	0.25369	100.52	100.33	100.58	0					6	4	2	0	0	0	0.91909	1	36957	36957		5.7319	0	1	784210	+		48257	16253	35050	35336	47167	47167					-0.0796093691308215
SIDFRIEF	8	Unmodified	_SIDFRIEF_					0	0	0		tr|U7T131|U7T131_FUSNUTIGR00255familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00671PE=3SV=1	tr|U7T131|U7T131_FUSNUTIGR00255familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00671PE=3SV=1	tr|U7T131|U7T131_FUSNUTIGR00255familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00671PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	513.7027587890625	2	513.766374	1025.5182	-0.0023477	-1.2062E-06	-0.366	-0.00018804	-0.36834	-0.00018924	513.7661313536097	69.39	1.0134	69.39	68.819	69.832	0					39	19	3	0	0	0	0.55372	1	25264	25264		48.346	14.243	1	10361000			48258	29899	35051	35337	47168	47168					0.0064576755189591495
SIDFRIEF	8	Unmodified	_SIDFRIEF_					0	0	0		tr|U7T131|U7T131_FUSNUTIGR00255familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00671PE=3SV=1	tr|U7T131|U7T131_FUSNUTIGR00255familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00671PE=3SV=1	tr|U7T131|U7T131_FUSNUTIGR00255familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00671PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	514.1658935546875	2	513.766374	1025.5182	-0.64889	-0.00033338	0.011809	6.0669E-06	-0.63709	-0.00032731	513.76633392997	68.527	0.86063	69.263	68.816	69.677	0.73511					40	16	3	0	0	0	0.070281	1	25936	25936		100.37	15.015	1	9905800			48259	29899	35051	35337	47169	47169					0.0064576755189591495
SIDFYSGFA	9	Unmodified	_SIDFYSGFA_					0	0	0			REV__nc|ENSG00000107736|Q9H251-4|CDH23	REV__nc|ENSG00000107736|Q9H251-4|CDH23	MSMS	A375_MHC_IP_R2	2	503.6912536621094	2	503.729458	1005.44436	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.238	1	28.917	28.417	29.417	0.67857								0	0	0	0.15283	1	9731	9731		16.942	1.0951	1		+		48260	17494	35052	35338	47170	47170					-0.05814200610416265
SIDIERKKG	9	Unmodified	_SIDIERKKG_					0	0	0			REV__ENSG00000182791|ENST00000333861|CCDC87	REV__ENSG00000182791|ENST00000333861|CCDC87	MULTI-MSMS	A375_MHC_IP_R1	1	523.7028198242188	2	523.303655	1044.59276	-0.53348	-0.00027917	-0.028096	-1.4703E-05	-0.56158	-0.00029388	523.3035368354801	119.31	2.7892	119.31	117.56	120.35	0					112	54	3	0	0	0	0.58047	1	43601	43601		15.847	1.9411	1	60595000	+		48261	21709	35053	35339	47171	47171					0.07224530363305348
SIDIERKKG	9	Unmodified	_SIDIERKKG_					0	0	0			REV__ENSG00000182791|ENST00000333861|CCDC87	REV__ENSG00000182791|ENST00000333861|CCDC87	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	523.303655	1044.59276	-0.53348	-0.00027917	-0.028096	-1.4703E-05	-0.56158	-0.00029388	523.3035368354801	119.31	2.7892	119.31	117.56	120.35	0	0.092426	3.5888E-05	NaN	15.847	112	54	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60595000	+		48262	21709	35053	35339							0.07224530363305348
SIDKVMEVPD	10	Unmodified	_SIDKVMEVPD_					0	0	0			REV__ENSG00000198754|ENST00000327582|OXCT2	REV__ENSG00000198754|ENST00000327582|OXCT2	MULTI-SECPEP	A375_MHC_IP_R1	1	378.2804870605469	3	378.190002	1131.54818	0.19549	7.3932E-05	2.2154	0.00083784	2.4109	0.00091177	378.19097875710924	24.378	0.55567	24.378	24.245	24.801	0					16	10	2	0	0	0	0.9269	1	6990	6990		0.62683	0	1	1809300	+		48263	22412	35054	35340	47172	47172					-0.012336615650610838
SIDLVERYWFY	11	Unmodified	_SIDLVERYWFY_					0	0	0			REV__SLC6A17|p.A210V|1|0.63|ENSG00000197106|chr1:110174836-110174836|C/T|missense_variant	REV__SLC6A17|p.A210V|1|0.63|ENSG00000197106|chr1:110174836-110174836|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	498.1629638671875	3	497.581998	1489.72417	-0.43507	-0.00021648	-2.1696	-0.0010795	-2.6046	-0.001296	497.5807726202881	63.718	0.3053	64.458	64.292	64.597	0.74022					8	5	2	0	0	0	0.99411	1	24179	24179		6.6235	3.9922	1	695260	+		48264	28000	35055	35341	47173	47173					-0.001107040594888531
SIDLYERQI	9	Unmodified	_SIDLYERQI_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-SECPEP	A375_MHC_IP_R2	2	569.3880004882812	2	568.800946	1135.58734	-0.33256	-0.00018916	0.12446	7.0793E-05	-0.2081	-0.00011837	568.8011902501067	76.077	0.2528	76.817	76.64	76.893	0.74052					7	4	2	0	0	0	0.72222	1	28864	28864		20.415	20.415	1	1249600	+		48265	18742	35056	35342	47174	47174					0.024968067808231353
SIDMELVK	8	Unmodified	_SIDMELVK_					0	0	0			REV__FAM111B|p.I324Lfs*4|1|0.88|ENSG00000189057|chr11:59125067-59125076|ATTCTCCCAC/-|frameshift_variant	REV__FAM111B|p.I324Lfs*4|1|0.88|ENSG00000189057|chr11:59125067-59125076|ATTCTCCCAC/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	467.6847839355469	2	467.749336	933.484119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.987	1	30.686	30.186	31.186	0.69872								0	0	0	0.16876	1	10511	10511		18.135	2.2878	1		+		48266	22137	35057	35343	47175	47175					0.014716030686486192
SIDNDHGNLY	10	Unmodified	_SIDNDHGNLY_					0	0	0		ENSG00000205517|ENST00000380456|RGL3;nc|ENSG00000205517|Q3MIN7-2|RGL3	ENSG00000205517|ENST00000380456|RGL3	ENSG00000205517|ENST00000380456|RGL3	MULTI-MSMS	A375_MHC_IP_R1	1	574.6556396484375	2	574.25436	1146.49417	-0.054829	-3.1486E-05	0.88021	0.00050547	0.82539	0.00047398	574.255592657829	35.614	1.4767	35.614	35.064	36.541	0					49	28	3	0	0	0	0.091534	2	11883	11883;11909		65.474	38.59	1	3655700			48267	9515	35058	35344	47176;47177	47176					-0.07322117672401873
SIDNDHGNLY	10	Unmodified	_SIDNDHGNLY_					0	0	0		ENSG00000205517|ENST00000380456|RGL3;nc|ENSG00000205517|Q3MIN7-2|RGL3	ENSG00000205517|ENST00000380456|RGL3	ENSG00000205517|ENST00000380456|RGL3	MULTI-MSMS	A375_MHC_IP_R2	2	574.6551513671875	2	574.25436	1146.49417	-0.43075	-0.00024736	1.3015	0.0007474	0.87077	0.00050004	574.2558293543839	34.9	0.70758	35.663	35.273	35.98	0.76338					23	13	3	0	0	0	0.10955	2	12654	12654;12679		61.602	36.203	1	3337000			48268	9515	35058	35344	47178;47179	47178					-0.07322117672401873
SIDNLILATI	10	Unmodified	_SIDNLILATI_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	A375_MHC_IP_R2	2	536.1577758789062	2	536.816064	1071.61758	-0.81386	-0.00043689	-0.095489	-5.126E-05	-0.90935	-0.00048815	536.8157903009393	70.1	0.45672	70.835	70.642	71.099	0.73421					13	8	2	0	0	0	0.77204	1	26534	26534		11.495	0	1	1172800	+		48269	17007	35059	35345	47180	47180					0.08463165446028142
SIDPEAGAQL	10	Unmodified	_SIDPEAGAQL_					0	0	0			REV__nc|ENSG00000100628|Q96Q27-1|ASB2	REV__nc|ENSG00000100628|Q96Q27-1|ASB2	MULTI-SECPEP	A375_MHC_IP_R2	2	501.15045166015625	2	500.750921	999.48729	-0.98459	-0.00049303	-0.36106	-0.0001808	-1.3457	-0.00067384	500.75082578308616	24.846	0.40518	25.49	25.263	25.668	0.64368					11	7	2	0	0	0	0.68963	1	8249	8249		28.495	0	1	3913600	+		48270	17113	35060	35346	47181	47181					-0.012474305529963203
SIDPEFYNSIV	11	Unmodified	_SIDPEFYNSIV_					0	0	0		ENST00000567161.1_1_16:69967954-69970356:+|nuORF;nc|ENSG00000198373|O00308-3|WWP2;nc|ENSG00000198373|O00308-2|WWP2;ENSG00000198373|ENST00000359154|WWP2	ENST00000567161.1_1_16:69967954-69970356:+|nuORF	ENST00000567161.1_1_16:69967954-69970356:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	642.7101440429688	2	642.311343	1282.60813	-0.58939	-0.00037857	-0.50858	-0.00032667	-1.098	-0.00070524	642.3106465700773	87.517	0.96577	87.517	86.983	87.949	0					36	18	3	0	0	0	0.51633	1	32058	32058		29.841	0	1	8015200			48271	9260	35061	35347	47182	47182					-0.02186647630196603
SIDPEFYNSIV	11	Unmodified	_SIDPEFYNSIV_					0	0	0		ENST00000567161.1_1_16:69967954-69970356:+|nuORF;nc|ENSG00000198373|O00308-3|WWP2;nc|ENSG00000198373|O00308-2|WWP2;ENSG00000198373|ENST00000359154|WWP2	ENST00000567161.1_1_16:69967954-69970356:+|nuORF	ENST00000567161.1_1_16:69967954-69970356:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	642.7098388671875	2	642.311343	1282.60813	-0.58884	-0.00037822	-0.24937	-0.00016017	-0.83821	-0.00053839	642.310988244264	86.733	1.0181	87.466	87.049	88.067	0.733					46	19	4	0	0	0	0.59391	2	32959	32921;32959		23.79	2.2436	1	7146600			48272	9260	35061	35347	47183;47184	47184					-0.02186647630196603
SIDPLKIEEY	10	Unmodified	_SIDPLKIEEY_					0	0	0			REV__tr|U7STU4|U7STU4_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00985PE=4SV=1	REV__tr|U7STU4|U7STU4_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00985PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	403.2804260253906	3	402.879933	1205.61797	-0.33687	-0.00013572	1.4697	0.00059212	1.1328	0.0004564	402.8802604302953	33.703	0.6581	33.703	33.393	34.052	0					19	12	2	0	0	0	0.93578	1	11075	11075		8.9762	0.82072	1	2090900	+		48273	28506	35062	35348	47185	47185					0.023385403751944978
SIDQNWSF	8	Unmodified	_SIDQNWSF_					0	0	0			REV__nc|ENSG00000113812|Q9H981-3|ACTR8	REV__nc|ENSG00000113812|Q9H981-3|ACTR8	MSMS	A375_MHC_IP_R1	1	498.6522521972656	2	498.724707	995.43486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.978	1	58.978	58.478	59.478	0								0	0	0	0.16876	1	21201	21201		14.582	2.9414	1		+		48274	27180	35063	35349	47186	47186					-0.0630396889594067
SIDRPFIDPQR	11	Unmodified	_SIDRPFIDPQR_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MSMS	A375_MHC_IP_R1	1	672.5068969726562	2	672.356951	1342.69935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.633	1	85.633	85.133	86.133	0								0	0	0	0.16191	1	31386	31386		8.7454	1.1365	1				48275	2487	35064	35350	47187	47187					0.041706608577896986
SIDRQRRFFFN	11	Unmodified	_SIDRQRRFFFN_					0	0	0			REV__ENST00000493035.5_1_2:172864861-172928621:+|nuORF	REV__ENST00000493035.5_1_2:172864861-172928621:+|nuORF	MSMS	A375_MHC_IP_R1	1	743.3634643554688	2	743.389116	1484.76368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.23	1	125.23	124.73	125.73	0								0	0	0	0.16249	1	47524	47524		5.7319	0	1		+		48276	21177	35065	35351	47188	47188					0.040688607346055505
SIDRSTNPDL	10	Unmodified	_SIDRSTNPDL_					0	0	0			REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	MULTI-SECPEP	A375_MHC_IP_R1	1	559.510009765625	2	559.277835	1116.54112	-0.4462	-0.00024955	-3.948	-0.002208	-4.3942	-0.0024576	559.7791950673154	96.626	0.40564	96.626	96.376	96.781	0					10	7	2	0	0	0	0.78945	1	35551	35551		9.3831	0	1	463230	+		48277	18151	35066	35352	47189	47189					-0.012492581212882214
SIDSIVLEAV	10	Unmodified	_SIDSIVLEAV_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	A375_MHC_IP_R2	2	522.535888671875	2	523.292422	1044.57029	-0.51161	-0.00026772	-3.6967	-0.0019345	-4.2083	-0.0022022	523.2906256866942	78.373	0.30493	79.117	78.982	79.287	0.74474					6	5	2	0	0	0	0.91909	1	29752	29752		5.7319	4.0792	1	643820			48278	6242	35067	35353	47190	47190					0.049788861749902935
SIDSLQLGY	9	Unmodified	_SIDSLQLGY_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	A375_MHC_IP_R1	1	498.65533447265625	2	498.25584	994.497126	-0.38811	-0.00019338	-0.19854	-9.8921E-05	-0.58665	-0.0002923	498.25587676254094	93.896	0.60561	93.896	93.635	94.241	0					25	11	3	0	0	0	0.026268	1	34517	34517		78.149	13.913	1	1391900			48279	2919	35068	35354	47191	47191					-0.0003424254761057455
SIDSNISLV	9	Unmodified	_SIDSNISLV_					0	0	0		nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENSG00000105677|ENST00000222284|TMEM147	nc|ENSG00000105677|Q9BVK8-2|TMEM147	nc|ENSG00000105677|Q9BVK8-2|TMEM147	MULTI-SECPEP	A375_MHC_IP_R1	1	946.8773803710938	1	947.504403	946.497126	0.12691	0.00012025	-0.49187	-0.00046604	-0.36496	-0.0003458	947.5039022180578	88.555	0.66167	88.555	88.205	88.867	0					21	12	2	0	0	0	0.04395	1	32432	32432		92.491	23.387	1	9968500			48280	2629	35069	35355	47192	47192					0.02173757452396785
SIDTQTPSV	9	Unmodified	_SIDTQTPSV_					0	0	0		ENST00000482540.1_1_7:8110532-8125911:+|nuORF;ENST00000496617.2_1_7:8099749-8118291:+|nuORF;ENSG00000106415|ENST00000223145|GLCCI1	ENST00000482540.1_1_7:8110532-8125911:+|nuORF	ENST00000482540.1_1_7:8110532-8125911:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	474.1640625	2	474.237647	946.460741	-0.53106	-0.00025185	-0.087951	-4.171E-05	-0.61901	-0.00029356	474.2374961812412	46.449	0.20017	46.449	46.345	46.545	0					5	3	2	0	0	0	0.3213	1	16288	16288		30.637	12.49	1	506310			48281	12526	35070	35356	47193	47193					-0.014631194443154527
SIDVAGNLDY	10	Unmodified	_SIDVAGNLDY_					0	0	0		ENST00000503612.1_1_4:674719-675780:+|nuORF;nc|ENSG00000215375|Q02045-2|MYL5;ENST00000503300.5_1_4:672853-675780:+|nuORF;ENSG00000215375|ENST00000400159|MYL5	ENST00000503612.1_1_4:674719-675780:+|nuORF	ENST00000503612.1_1_4:674719-675780:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	534.6585693359375	2	533.756204	1065.49785	-0.80531	-0.00042984	1.7145	0.00091511	0.90917	0.00048528	534.2587851951671	82.19	0.96486	82.933	82.482	83.447	0.74293					45	18	4	0	0	0	0.69306	1	31282	31282		13.906	2.2658	1	2530900			48282	9644	35071	35357	47194	47194					-0.03227447898552782
SIDWYLIEY	9	Unmodified	_SIDWYLIEY_					0	0	0			REV__EML4|p.P751S|1|0.44|ENSG00000143924|chr2:42326162-42326162|C/T|missense_variant	REV__EML4|p.P751S|1|0.44|ENSG00000143924|chr2:42326162-42326162|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	401.62042236328125	3	401.197374	1200.57029	-0.24705	-9.9116E-05	0.67224	0.0002697	0.42519	0.00017059	401.197776787742	20.229	1.3732	20.229	19.725	21.098	0					65	26	4	0	0	0	0.38603	2	5035	5035;5070		18.373	6.8784	1	15430000	+		48283	16076	35072	35358	47195;47196	47195					-0.021971138249909927
SIDYYCSLY	9	Unmodified	_SIDYYCSLY_					0	0	0			REV__ENST00000375664.8_2_10:28909700-28909754:+|nuORF	REV__ENST00000375664.8_2_10:28909700-28909754:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	563.220703125	2	563.741708	1125.46886	-0.54987	-0.00030998	-4.2977	-0.0024228	-4.8476	-0.0027328	563.7384545265635	75.247	0.15142	75.984	75.872	76.023	0.73751					4	2	2	0	0	0	0.63811	1	28522	28522		12.532	3.9383	1	640750	+		48284	24132	35073	35359	47197	47197					-0.08885308519211321
SIEAQAALHT	10	Unmodified	_SIEAQAALHT_					0	0	0			REV__ENST00000554913.5_1_14:104163972-104164347:-|nuORF	REV__ENST00000554913.5_1_14:104163972-104164347:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	521.1714477539062	2	520.772188	1039.52982	-0.52022	-0.00027092	-0.37886	-0.0001973	-0.89908	-0.00046821	520.7720549914216	96.013	0.40697	96.013	95.867	96.274	0					10	7	2	0	0	0	0.83355	1	35325	35325		8.1555	6.3113	1	1252500	+		48285	26086	35074	35360	47198	47198					0.011639645752211436
SIEAQAALHT	10	Unmodified	_SIEAQAALHT_					0	0	0			REV__ENST00000554913.5_1_14:104163972-104164347:-|nuORF	REV__ENST00000554913.5_1_14:104163972-104164347:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	520.772188	1039.52982	-0.37111	-0.00019327	-0.34274	-0.00017849	-0.71385	-0.00037175	520.772137371312	95.01	0.40768	95.76	95.633	96.041	0.75045	-0.1265	1.694E-05	NaN	8.1555	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1314900	+		48286	26086	35074	35360							0.011639645752211436
SIEASGQLAY	10	Unmodified	_SIEASGQLAY_					0	0	0			REV__ENSG00000121904|ENST00000373381|CSMD2	REV__ENSG00000121904|ENST00000373381|CSMD2	MULTI-SECPEP	A375_MHC_IP_R1	1	519.6686401367188	2	519.758746	1037.50294	-0.46332	-0.00024081	0.10999	5.717E-05	-0.35332	-0.00018364	520.2600583739085	98.15	0.30426	98.15	97.896	98.2	0					9	5	2	0	0	0	0.8125	1	36021	36021		13.042	10.74	1	825040	+		48287	18178	35075	35361	47199	47199					-0.014311440359506378
SIEASHGSW	9	Unmodified	_SIEASHGSW_					0	0	0			REV__ENSG00000161996|ENST00000293879|WDR90	REV__ENSG00000161996|ENST00000293879|WDR90	MSMS	A375_MHC_IP_R1	1	487.2078857421875	2	487.222331	972.430109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.324	1	32.324	31.824	32.824	0								0	0	0	0.15486	1	10434	10434		11.64	0.81637	1		+		48288	20227	35076	35362	47200	47200					-0.057208530387015344
SIEDETDP	8	Unmodified	_SIEDETDP_					0	0	0			REV__ENST00000459840.5_1_3:3192551-3196584:-|nuORF	REV__ENST00000459840.5_1_3:3192551-3196584:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	904.850341796875	1	905.373448	904.366172	-0.21071	-0.00019077	-0.90809	-0.00082216	-1.1188	-0.0010129	905.3750702186494	115	0.20537	115.69	115.58	115.78	0.68999					5	3	2	0	0	0	0.90224	1	43348	43348		4.756	0	1	1962100	+		48289	17806	35077	35363	47201	47201					-0.08983677986316252
SIEDLHADSC	10	Unmodified	_SIEDLHADSC_					0	0	0		ENST00000370766.7_1_X:134476167-134476350:-|nuORF	ENST00000370766.7_1_X:134476167-134476350:-|nuORF	ENST00000370766.7_1_X:134476167-134476350:-|nuORF	MSMS	A375_MHC_IP_R2	2	545.1539306640625	2	545.229496	1088.44444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.655	1	47.418	46.918	47.918	0.76286								0	0	0	0.15158	1	17476	17476		14.838	4.0143	1				48290	11157	35078	35364	47202	47202					-0.09624568672734313
SIEDNHANLTF	11	Unmodified	_SIEDNHANLTF_					0	0	0			REV__ENSG00000136045|ENST00000412830|PWP1	REV__ENSG00000136045|ENST00000412830|PWP1	MSMS	A375_MHC_IP_R1	1	630.7469482421875	2	630.796392	1259.57823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.795	1	83.795	83.295	84.295	0								0	0	0	0.16179	1	30670	30670		9.3831	2.0939	1		+		48291	18912	35079	35365	47203	47203					-0.041175865755576524
SIEDSGSMYV	10	Unmodified	_SIEDSGSMYV_					0	0	0		OTOGL|p.Q1836Sfs*45|1|0.64|ENSG00000165899|chr12:80353484-80353484|C/-|frameshift_variant;ENSG00000165899|ENST00000547103|OTOGL	OTOGL|p.Q1836Sfs*45|1|0.64|ENSG00000165899|chr12:80353484-80353484|C/-|frameshift_variant	OTOGL|p.Q1836Sfs*45|1|0.64|ENSG00000165899|chr12:80353484-80353484|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	544.154296875	2	544.234247	1086.45394	-0.63604	-0.00034616	-0.38894	-0.00021168	-1.025	-0.00055783	544.2340251270783	87.292	0.91629	87.292	86.831	87.747	0					27	17	2	0	0	0	0.43117	1	32016	32016		32.305	8.2849	1	2791800			48292	7000	35080	35366	47204	47204					-0.08582800387193856
SIEELGHDT	9	Unmodified	_SIEELGHDT_					0	0	0			REV__ENST00000486458.1_1_2:74077502-74087672:+|nuORF	REV__ENST00000486458.1_1_2:74077502-74087672:+|nuORF	MSMS	A375_MHC_IP_R1	1	500.6895446777344	2	500.732729	999.450904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.928	1	72.928	72.428	73.428	0								0	0	0	0.1535	1	26542	26542		15.847	2.3393	1		+		48293	18297	35081	35367	47205	47205					-0.048843074496971894
SIEELKVKY	9	Unmodified	_SIEELKVKY_					0	0	0			REV__nc|ENSG00000156384|Q86XK3-2|SFR1	REV__nc|ENSG00000156384|Q86XK3-2|SFR1	MULTI-SECPEP	A375_MHC_IP_R1	1	555.197509765625	2	554.816064	1107.61758	-0.5625	-0.00031209	1.9384	0.0010754	1.3759	0.00076336	554.8167370875506	46.274	0.35067	46.274	46.094	46.444	0					9	6	2	0	0	0	0.34746	1	16227	16227		50.855	14.811	1	592090	+		48294	27305	35082	35368	47206	47206					0.06807165446002728
SIEELKVKY	9	Unmodified	_SIEELKVKY_					0	0	0			REV__nc|ENSG00000156384|Q86XK3-2|SFR1	REV__nc|ENSG00000156384|Q86XK3-2|SFR1	MULTI-MATCH	A375_MHC_IP_R2	2		2	554.816064	1107.61758	-0.83065	-0.00046086	1.8513	0.0010271	1.0207	0.00056628	554.816103544525	45.359	0.25415	46.124	45.947	46.201	0.76519	-0.074902	-8.5847E-05	NaN	50.855	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	901900	+		48295	27305	35082	35368							0.06807165446002728
SIEEQLFLEQ	10	Unmodified	_SIEEQLFLEQ_					0	0	0			REV__nc|ENSG00000185739|Q86TD4-3|SRL	REV__nc|ENSG00000185739|Q86TD4-3|SRL	MSMS	A375_MHC_IP_R2	2	618.302490234375	2	618.311343	1234.60813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.23	1	112.96	112.46	113.46	0.72458								0	0	0	0.15435	1	42312	42312		6.7232	0	1		+		48296	21915	35083	35369	47207	47207					0.00021352369822125183
SIEETMTQIV	10	Unmodified	_SIEETMTQIV_					0	0	0			REV__tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	REV__tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	MSMS	A375_MHC_IP_R1	1	575.9349975585938	2	575.786647	1149.55874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.503	1	87.503	87.003	88.003	0								0	0	0	0.15038	1	32107	32107		17.113	0.96379	1		+		48297	28855	35084	35370	47208	47208					-0.010056789106556607
SIEFPTRVHTY	11	Unmodified	_SIEFPTRVHTY_					0	0	0			REV__nc|ENSG00000090020|P19634-2|SLC9A1	REV__nc|ENSG00000090020|P19634-2|SLC9A1	MULTI-MSMS	A375_MHC_IP_R1	1	675.74609375	2	675.346052	1348.67755	-0.50729	-0.00034259	-0.89084	-0.00060162	-1.3981	-0.00094422	675.8463995893985	88.743	0.3045	88.743	88.51	88.815	0					10	5	2	0	0	0	0.7039	1	32598	32598		15.248	0.8431	1	2273400	+		48298	16921	35085	35371	47209	47209					0.01715856109217384
SIEFVLRMT	9	Unmodified	_SIEFVLRMT_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	A375_MHC_IP_R1	1	366.26702880859375	3	365.867082	1094.57942	0.74827	0.00027377	-0.36801	-0.00013464	0.38026	0.00013912	365.866761240531	49.109	0.40338	49.109	48.882	49.285	0					14	7	2	0	0	0	0.71541	1	17386	17386		7.609	2.7119	1	2289600	+		48299	22046	35086	35372	47210	47210					0.03590956259677114
SIEGTVKFKN	10	Unmodified	_SIEGTVKFKN_					0	0	0		ABCB5|p.E387K|1|0.21|ENSG00000004846|chr7:20648031-20648031|G/A|missense_variant	ABCB5|p.E387K|1|0.21|ENSG00000004846|chr7:20648031-20648031|G/A|missense_variant	ABCB5|p.E387K|1|0.21|ENSG00000004846|chr7:20648031-20648031|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	562.8937377929688	2	561.811313	1121.60807	-0.29021	-0.00016304	0.11119	6.2467E-05	-0.17902	-0.00010058	561.8112193562149	78.527	1.1136	78.527	78.048	79.161	0					65	21	4	0	0	0	0.66857	1	28712	28712		13.042	0	1	20642000			48300	9	35087	35373	47211	47211					0.05213397160491695
SIEHFSSLF	9	Unmodified	_SIEHFSSLF_					0	0	0			REV__ENST00000495719.1_1_3:101576051-101578212:+|nuORF	REV__ENST00000495719.1_1_3:101576051-101578212:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1843872070312	2	533.763832	1065.51311	-0.62113	-0.00033153	-0.079293	-4.2324E-05	-0.70042	-0.00037386	533.7637969987376	100.78	1.0133	100.78	100.43	101.45	0					29	19	2	0	0	0	0.3243	1	37006	37006		15.847	1.9411	1	4913200	+		48301	25449	35088	35374	47212	47212					-0.017025363107222802
SIEIRLYQ	8	Unmodified	_SIEIRLYQ_					0	0	0			REV__nc|ENSG00000034677|Q9NV58-2|RNF19A	REV__nc|ENSG00000034677|Q9NV58-2|RNF19A	MULTI-SECPEP	A375_MHC_IP_R1	1	511.61358642578125	2	511.287474	1020.5604	-0.49533	-0.00025326	-0.50254	-0.00025694	-0.99787	-0.0005102	511.2870319087585	61.407	0.45997	61.407	61.126	61.585	0					14	8	2	0	0	0	0.8211	1	22183	22183		23.148	1.4018	1	1681700	+		48302	16313	35089	35375	47213	47213					0.05093742960286818
SIEIRLYQ	8	Unmodified	_SIEIRLYQ_					0	0	0			REV__nc|ENSG00000034677|Q9NV58-2|RNF19A	REV__nc|ENSG00000034677|Q9NV58-2|RNF19A	MULTI-MATCH	A375_MHC_IP_R2	2		2	511.287474	1020.5604	-1.0486	-0.00053615	0.0015316	7.8309E-07	-1.0471	-0.00053537	511.28747811961773	60.525	0.45927	61.27	60.955	61.414	0.74503	-0.068506	0.00022389	NaN	23.148	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1884200	+		48303	16313	35089	35375							0.05093742960286818
SIEIRQKRL	9	Unmodified	_SIEIRQKRL_					0	0	0			REV__nc|ENSG00000120251|P42262-4|GRIA2	REV__nc|ENSG00000120251|P42262-4|GRIA2	MULTI-MSMS	A375_MHC_IP_R1	1	381.9720764160156	3	381.571657	1141.69314	0.36675	0.00013994	0.32235	0.000123	0.6891	0.00026294	381.57174853402256	59.808	0.45736	59.808	59.548	60.006	0					16	8	3	0	0	0	0.69317	1	21544	21544		7.609	0	1	2000600	+		48304	18116	35090	35376	47214	47214					0.12796187416938665
SIEISKDNY	9	Unmodified	_SIEISKDNY_					0	0	0		tr|U7T539|U7T539_FUSNUTetratricopeptiderepeatfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00425PE=4SV=1	tr|U7T539|U7T539_FUSNUTetratricopeptiderepeatfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00425PE=4SV=1	tr|U7T539|U7T539_FUSNUTetratricopeptiderepeatfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00425PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	535.1636352539062	2	534.764029	1067.5135	-1.129	-0.00060375	0.03845	2.0562E-05	-1.0906	-0.00058319	534.7637075612172	20.524	0.76162	21.134	20.651	21.413	0.61029					18	14	2	0	0	0	0.58271	1	6414	6414		20.454	0	1	877760			48305	30010	35091	35377	47215	47215					-0.017551613815157907
SIEITEIHIQ	10	Unmodified	_SIEITEIHIQ_					0	0	0			REV__ENSG00000075568|ENST00000186436|TMEM131	REV__ENSG00000075568|ENST00000186436|TMEM131	MULTI-SECPEP	A375_MHC_IP_R1	1	592.2213134765625	2	591.821878	1181.6292	-0.42019	-0.00024867	0.30811	0.00018235	-0.11208	-6.633E-05	591.8219366477189	58.659	0.355	58.659	58.481	58.836	0					11	6	2	0	0	0	0.93194	1	21097	21097		2.9952	0.26005	1	3286700	+		48306	16659	35092	35378	47216	47216					0.04565362469338652
SIEKLTHYAG	10	Unmodified	_SIEKLTHYAG_					0	0	0			REV__CPA2|p.E127K|1|0.42|ENSG00000158516|chr7:130270783-130270783|G/A|missense_variant	REV__CPA2|p.E127K|1|0.42|ENSG00000158516|chr7:130270783-130270783|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	373.6084289550781	3	373.532868	1117.57677	0.32753	0.00012234	0.92621	0.00034597	1.2537	0.00046831	373.5331542958665	25.29	0.55938	25.29	25.104	25.664	0					23	10	3	0	0	0	0.91643	1	7358	7358		8.4443	8.4443	1	2325200	+		48307	15906	35093	35379	47217	47217					0.022688241263495
SIELCDSCKH	10	Unmodified	_SIELCDSCKH_					0	0	0			REV__tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	REV__tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	568.1478271484375	2	567.749541	1133.48453	-0.81156	-0.00046076	-0.68288	-0.00038771	-1.4944	-0.00084847	567.7484307115752	29.253	0.40685	29.253	28.996	29.403	0					13	7	2	0	0	0	0.22217	1	9148	9148		56.177	16.22	1	5896200	+		48308	28877	35094	35380	47218	47218					-0.07687345273825485
SIELCDSCKH	10	Unmodified	_SIELCDSCKH_					0	0	0			REV__tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	REV__tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	567.749541	1133.48453	-0.91801	-0.0005212	-0.80498	-0.00045703	-1.723	-0.00097823	567.747981555709	28.602	0.20149	29.3	29.132	29.333	0.69872	0.023732	-0.00010536	NaN	56.177	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8777800	+		48309	28877	35094	35380							-0.07687345273825485
SIELEIRKF	9	Unmodified	_SIELEIRKF_					0	0	0		ENST00000416640.2_3_22:21698217-21699360:+|nuORF;ENSG00000196422|ENST00000356818|PPP1R26	ENST00000416640.2_3_22:21698217-21699360:+|nuORF	ENST00000416640.2_3_22:21698217-21699360:+|nuORF	MSMS	A375_MHC_IP_R2	2	378.9487609863281	3	378.888763	1133.64446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.597	1	46.362	45.862	46.862	0.76519								0	0	0	0.14934	1	17050	17050		22.658	1.0679	1				48310	9039	35095	35381	47219	47219					0.08298274057187882
SIELILWEDE	10	Unmodified	_SIELILWEDE_					0	0	0		ENST00000448841.5_1_10:104573393-104573648:+|nuORF	ENST00000448841.5_1_10:104573393-104573648:+|nuORF	ENST00000448841.5_1_10:104573393-104573648:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	623.1806640625	2	623.813719	1245.61288	-0.69725	-0.00043495	0.53711	0.00033505	-0.16014	-9.9898E-05	623.8139033186916	52.995	0.35443	52.995	52.744	53.099	0					11	6	2	0	0	0	0.87163	1	18874	18874		5.7319	0	1	2076100			48311	12054	35096	35382	47220	47220					-9.763487400960003E-05
SIELILWEDE	10	Unmodified	_SIELILWEDE_					0	0	0		ENST00000448841.5_1_10:104573393-104573648:+|nuORF	ENST00000448841.5_1_10:104573393-104573648:+|nuORF	ENST00000448841.5_1_10:104573393-104573648:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	623.1793823242188	2	623.813719	1245.61288	-1.1556	-0.00072089	0.21323	0.00013302	-0.94239	-0.00058787	623.8135864338097	52.285	0.30216	53.038	52.882	53.184	0.75225					8	5	2	0	0	0	0.78945	1	19760	19760		13.906	0.86358	1	1545500			48312	12054	35096	35382	47221	47221					-9.763487400960003E-05
SIEMDDENKY	10	Unmodified	_SIEMDDENKY_					0	0	0			REV__ENST00000473253.5_1_3:174581768-175298945:+|nuORF	REV__ENST00000473253.5_1_3:174581768-175298945:+|nuORF	MSMS	A375_MHC_IP_R1	1	622.1853637695312	2	622.260993	1242.50743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.195	1	46.195	45.695	46.695	0								0	0	0	0.15332	1	16196	16196		10.074	0.6908	1		+		48313	21468	35097	35383	47222	47222					-0.1041204767536783
SIENEYQP	8	Unmodified	_SIENEYQP_					0	0	0			REV__nc|ENSG00000136111|O60343-3|TBC1D4	REV__nc|ENSG00000136111|O60343-3|TBC1D4	MULTI-SECPEP	A375_MHC_IP_R1	1	490.63494873046875	2	490.221997	978.429441	-0.27124	-0.00013297	0.45271	0.00022193	0.18147	8.8962E-05	490.2221274422748	33.92	0.60597	33.92	33.597	34.203	0					18	11	2	0	0	0	0.73563	1	11073	11073		28.487	11.545	1	1791700	+		48314	27243	35098	35384	47223	47223					-0.060636924784148505
SIENKPRWY	9	Unmodified	_SIENKPRWY_					0	0	0			REV__ENST00000530104.2_1_11:111946298-111951307:+|nuORF	REV__ENST00000530104.2_1_11:111946298-111951307:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	597.208984375	2	596.809105	1191.60366	-0.64862	-0.0003871	-0.64781	-0.00038662	-1.2964	-0.00077372	596.8087210890081	45.157	0.40455	45.922	45.746	46.15	0.76519					10	7	2	0	0	0	0.76827	1	16906	16906		10.824	1.4408	1	2275800	+		48315	19728	35099	35385	47224	47224					0.015519327375614012
SIEPLDPQHY	10	Unmodified	_SIEPLDPQHY_					0	0	0			REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	MULTI-SECPEP	A375_MHC_IP_R2	2	400.93023681640625	3	400.196144	1197.5666	-0.34534	-0.00013821	-1.2056	-0.00048248	-1.5509	-0.00062068	400.1956714745915	23.424	0.3536	24.054	23.878	24.232	0.63014					10	6	2	0	0	0	0.93578	1	7555	7555		8.9762	3.2444	1	16886000	+		48316	18151	35100	35386	47225	47225					-0.024277835988414154
SIEPVRHEKKG	11	Unmodified	_SIEPVRHEKKG_					0	0	0		ENST00000434735.6_1_12:109915511-109921459:+|nuORF;ENST00000540230.5_1_12:109915511-109921459:+|nuORF	ENST00000434735.6_1_12:109915511-109921459:+|nuORF	ENST00000434735.6_1_12:109915511-109921459:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	427.64178466796875	3	427.242088	1278.70443	-0.155	-6.6222E-05	-0.58927	-0.00025176	-0.74427	-0.00031798	427.24184722598204	131.87	0.8623	132.06	131.75	132.61	0.18954					36	16	3	0	0	0	0.73809	1	51913	51913		0.40827	0.041592	1	2707600			48317	11901	35101	35387	47226	47226					0.0762296472039452
SIERYDEKEK	10	Unmodified	_SIERYDEKEK_					0	0	0		tr|U7SXX5|U7SXX5_FUSNUToprimdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00872PE=4SV=1	tr|U7SXX5|U7SXX5_FUSNUToprimdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00872PE=4SV=1	tr|U7SXX5|U7SXX5_FUSNUToprimdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00872PE=4SV=1	MSMS	A375_MHC_IP_R2	2	433.2849426269531	3	432.885858	1295.63574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.5	1	35.252	34.752	35.752	0.75225								0	0	0	0.15411	1	12451	12451		7.4771	1.6089	1				48318	29833	35102	35388	47227	47227					-0.00024744369966356317
SIEVRNSFDSQ	11	Unmodified	_SIEVRNSFDSQ_					0	0	0			REV__nc|ENSG00000115464|Q70CQ2-3|USP34	REV__nc|ENSG00000115464|Q70CQ2-3|USP34	MULTI-MSMS	A375_MHC_IP_R2	2	641.706787109375	2	641.307123	1280.59969	-1.1641	-0.00074656	0.45927	0.00029453	-0.70485	-0.00045203	641.3073893453479	26.018	0.45755	26.678	26.5	26.957	0.65992					14	8	2	0	0	0	0.4429	1	8759	8759		35.612	2.8266	1	8509600	+		48319	17889	35103	35389	47228	47228					-0.029382015467945166
SIFAPKPVSF	10	Unmodified	_SIFAPKPVSF_					0	0	0			REV__nc|ENSG00000197162|A8K8V0-2|ZNF785	REV__nc|ENSG00000197162|A8K8V0-2|ZNF785	MSMS	A375_MHC_IP_R2	2	546.9417724609375	2	546.808042	1091.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.586	1	45.355	44.855	45.855	0.7691								0	0	0	0.15136	1	16644	16644		15.248	1.3424	1		+		48320	22265	35104	35390	47229	47229					0.0593950399975256
SIFAQIISV	9	Unmodified	_SIFAQIISV_					0	0	0		ENSG00000175283|ENST00000372586|DOLK	ENSG00000175283|ENST00000372586|DOLK	ENSG00000175283|ENST00000372586|DOLK	MULTI-MSMS	A375_MHC_IP_R2	2	489.6870422363281	2	489.286943	976.559333	-0.60155	-0.00029433	1.7514	0.00085696	1.1499	0.00056263	489.28732378824884	129.34	0.25238	129.58	129.47	129.72	0.23946					10	4	3	0	0	0	0.22528	1	50863	50863		36.127	12.106	1	5418400			48321	7947	35105	35391	47230	47230					0.0701152859138574
SIFAQIISV	9	Unmodified	_SIFAQIISV_					0	0	0		ENSG00000175283|ENST00000372586|DOLK	ENSG00000175283|ENST00000372586|DOLK	ENSG00000175283|ENST00000372586|DOLK	MULTI-MATCH	A375_MHC_IP_R1	1		2	489.286943	976.559333	-0.49373	-0.00024158	-0.031906	-1.5611E-05	-0.52564	-0.00025719	489.28675179391126	129.58	0.20372	129.58	129.45	129.65	0	-0.0023175	-0.00031474	NaN	36.127	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4502700			48322	7947	35105	35391							0.0701152859138574
SIFEDWISKNL	11	Unmodified	_SIFEDWISKNL_					0	0	0			REV__ENST00000502980.1_1_3:98239917-98241743:-|nuORF	REV__ENST00000502980.1_1_3:98239917-98241743:-|nuORF	MSMS	A375_MHC_IP_R2	2	676.3225708007812	2	676.34826	1350.68197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.99	1	125.32	124.82	125.82	0.32969								0	0	0	0.16108	1	48551	48551		13.042	0.80181	1		+		48323	16757	35106	35392	47231	47231					0.02065320532142323
SIFENMGRNYV	11	Unmodified	_SIFENMGRNYV_					0	0	0			REV__ENST00000492449.5_1_3:184603882-184769810:+|nuORF	REV__ENST00000492449.5_1_3:184603882-184769810:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	444.6748352050781	3	443.88005	1328.61832	-0.17163	-7.6185E-05	-0.093492	-4.1499E-05	-0.26513	-0.00011768	443.879913491369	31.166	0.35461	31.166	31.009	31.363	0					9	6	2	0	0	0	1.0011	1	9912	9912		0	0	1	1711000	+		48324	20001	35107	35393	47232	47232					-0.03284363176589977
SIFFSGKKR	9	Unmodified	_SIFFSGKKR_					0	0	0			REV__ENSG00000182836|ENST00000377801|PLCXD3	REV__ENSG00000182836|ENST00000377801|PLCXD3	MULTI-SECPEP	A375_MHC_IP_R2	2	357.9305114746094	3	357.209948	1068.60801	-0.49974	-0.00017851	0.51617	0.00018438	0.01643	5.869E-06	357.54457291101346	51.822	0.40816	52.575	52.372	52.78	0.75225					11	7	2	0	0	0	0.76827	1	19450	19450		2.086	0.34373	1	708070	+		48325	21710	35108	35394	47233	47233					0.07645441951149223
SIFGSIAL	8	Unmodified	_SIFGSIAL_					0	0	0		ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	MSMS	A375_MHC_IP_R1	1	404.63238525390625	2	404.234179	806.453805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.07	1	124.07	123.57	124.57	0								0	0	0	0.16876	1	46559	46559		2.5775	0	1				48326	1749	35109	35395	47234	47234					0.04283612465735587
SIFHLSFI	8	Unmodified	_SIFHLSFI_					0	0	0		ENSG00000146399|ENST00000275216|TAAR1	ENSG00000146399|ENST00000275216|TAAR1	ENSG00000146399|ENST00000275216|TAAR1	MULTI-SECPEP	A375_MHC_IP_R1	1	482.6684265136719	2	482.268553	962.522553	-0.21037	-0.00010145	0.11613	5.6005E-05	-0.094238	-4.5448E-05	482.2684867244879	110.74	0.81857	110.74	110.44	111.26	0					25	15	3	0	0	0	0.23624	1	40593	40593		60.39	3.8483	1	2152500			48327	5619	35110	35396	47235	47235					0.03979276765460327
SIFIRLKRKQK	11	Unmodified	_SIFIRLKRKQK_					0	0	0			REV__ENST00000547247.5_1_12:50479152-50482438:+|nuORF	REV__ENST00000547247.5_1_12:50479152-50482438:+|nuORF	MSMS	A375_MHC_IP_R1	1	708.8252563476562	2	708.96172	1415.90889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.75	1	110.75	110.25	111.25	0								0	0	0	0.16334	1	40605	40605		1.3295	0	1		+		48328	16509	35111	35397	47236	47236					0.21756948601569093
SIFKIMFI	8	Unmodified	_SIFKIMFI_					0	0	0		ENST00000416543.5_1_4:106629178-106629382:-|nuORF	ENST00000416543.5_1_4:106629178-106629382:-|nuORF	ENST00000416543.5_1_4:106629178-106629382:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	500.2043151855469	2	499.790807	997.56706	-0.33626	-0.00016806	0.64438	0.00032205	0.30811	0.00015399	499.7910266615086	113.34	0.46075	114.05	113.77	114.23	0.70985					9	8	2	0	0	0	0.96266	1	42700	42700		16.942	2.104	1	1446700			48329	11690	35112	35398	47237	47237					0.06817964587310144
SIFLKRLNK	9	Unmodified	_SIFLKRLNK_					0	0	0			REV__ENSG00000204480|ENST00000376101|PRAMEF19	REV__ENSG00000204480|ENST00000376101|PRAMEF19	MSMS	A375_MHC_IP_R2	2	373.58905029296875	3	373.572998	1117.69716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.257	1	32.994	32.494	33.494	0.73692								0	0	0	0.15486	1	11462	11462		4.897	2.3985	1		+		48330	22518	35113	35399	47238	47238					0.1430227691064374
SIFNEGIYIIK	11	Unmodified	_SIFNEGIYIIK_					0	0	0			REV__ENST00000309683.10_1_7:63981343-63981460:-|nuORF	REV__ENST00000309683.10_1_7:63981343-63981460:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	649.121337890625	2	648.863546	1295.71254	-0.30915	-0.00020059	1.6211	0.0010518	1.3119	0.00085125	649.3655901043969	104.19	0.30621	104.19	104.03	104.34	0					6	5	2	0	0	0	0.99331	1	38299	38299		5.2969	0	1	1436700	+		48331	23489	35114	35400	47239	47239					0.07651098917176569
SIFPLFADTN	10	Unmodified	_SIFPLFADTN_					0	0	0			REV__ENSG00000115590|ENST00000332549|IL1R2	REV__ENSG00000115590|ENST00000332549|IL1R2	MULTI-SECPEP	A375_MHC_IP_R2	2	562.1171264648438	2	562.784764	1123.55498	-0.47246	-0.00026589	0.72368	0.00040728	0.25122	0.00014138	562.7846916242909	89.175	0.70392	89.907	89.381	90.085	0.7318					18	13	2	0	0	0	0.85226	1	33852	33852		14.838	2.3067	1	1247900	+		48332	17895	35115	35401	47240	47240					-0.0018598062220007705
SIFPLLKKKKK	11	Unmodified	_SIFPLLKKKKK_					0	0	0			REV__ENST00000417638.1_1_9:12790708-12814310:-|nuORF	REV__ENST00000417638.1_1_9:12790708-12814310:-|nuORF	MSMS	A375_MHC_IP_R2	2	665.1194458007812	2	665.452665	1328.89078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.806	1	77.547	77.047	78.047	0.74142								0	0	0	0.16334	1	29162	29162		1.3295	0	1		+		48333	24547	35116	35402	47241	47241					0.23948813626839183
SIFQCIYFYFF	11	Unmodified	_SIFQCIYFYFF_					0	0	0		ENST00000528485.1_1_11:59496051-59496324:+|nuORF	ENST00000528485.1_1_11:59496051-59496324:+|nuORF	ENST00000528485.1_1_11:59496051-59496324:+|nuORF	MSMS	A375_MHC_IP_R1	1	739.4121704101562	2	739.346674	1476.6788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.969	1	74.969	74.469	75.469	0								0	0	0	0.1624	1	27310	27310		6.2058	0	1				48334	13117	35117	35403	47242	47242					-0.040476458462308074
SIFSLAAAVY	10	Unmodified	_SIFSLAAAVY_					0	0	0			REV__ENST00000398334.5_2_X:14887065-14891178:-|nuORF	REV__ENST00000398334.5_2_X:14887065-14891178:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	520.6173095703125	2	521.2844	1040.55425	-0.51647	-0.00026923	-1.4988	-0.00078132	-2.0153	-0.0010506	521.7847152098587	90.116	0.91731	90.848	90.442	91.359	0.7318					20	17	2	0	0	0	0.76414	1	34307	34307		10.074	0	1	965620	+		48335	24374	35118	35404	47243	47243					0.035592247287468126
SIFSPLKCLR	10	Unmodified	_SIFSPLKCLR_					0	0	0			REV__ENSG00000014164|ENST00000262577|ZC3H3	REV__ENSG00000014164|ENST00000262577|ZC3H3	MULTI-MSMS	A375_MHC_IP_R2	2	582.7346801757812	2	582.333901	1162.65325	-0.4332	-0.00025227	0.81235	0.00047306	0.37915	0.00022079	582.3349275772055	128.77	1.3138	129.01	128.76	130.07	0.23947					70	25	4	0	0	0	0.71944	1	50579	50579		3.5965	0	1	39533000	+		48336	16240	35119	35405	47244	47244					0.07842924421993303
SIGAMHNAQ	9	Unmodified	_SIGAMHNAQ_					0	0	0			REV__ENSG00000255378|ENST00000528972|PRR23D2	REV__ENSG00000255378|ENST00000528972|PRR23D2	MULTI-MSMS	A375_MHC_IP_R1	1	464.67901611328125	2	464.718901	927.42325	-0.24214	-0.00011252	1.0327	0.00047992	0.79058	0.0003674	464.71922002222334	50.619	0.45678	50.619	50.408	50.864	0					12	8	2	0	0	0	0.65721	1	17957	17957		10.824	0.64053	1	1237600	+		48337	22875	35120	35406	47245	47245					-0.04336489190939119
SIGAMHNAQ	9	Unmodified	_SIGAMHNAQ_					0	0	0			REV__ENSG00000255378|ENST00000528972|PRR23D2	REV__ENSG00000255378|ENST00000528972|PRR23D2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	464.718901	927.42325	-0.8706	-0.00040458	1.0191	0.00047358	0.14847	6.8995E-05	464.71940836487306	49.836	0.40931	50.59	50.394	50.804	0.75406	-0.014649	-6.9788E-06	NaN	10.824	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1199700	+		48338	22875	35120	35406							-0.04336489190939119
SIGARQDP	8	Unmodified	_SIGARQDP_					0	0	0			REV__ENST00000378625.5_1_1:1696850-1711491:-|nuORF	REV__ENST00000378625.5_1_1:1696850-1711491:-|nuORF	MSMS	A375_MHC_IP_R2	2	422.27862548828125	2	422.219591	842.42463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.425	1	35.177	34.677	35.677	0.75225								0	0	0	0.16876	1	12417	12417		18.135	2.3668	1		+		48339	24184	35121	35407	47246	47246					-0.00288531830528882
SIGDKLQKV	9	Unmodified	_SIGDKLQKV_					0	0	0			REV__nc|ENSG00000108406|Q8IX18-4|DHX40	REV__nc|ENSG00000108406|Q8IX18-4|DHX40	MULTI-MSMS	A375_MHC_IP_R2	2	494.5450134277344	2	494.295299	986.576045	-0.40385	-0.00019962	0.1987	9.8215E-05	-0.20515	-0.0001014	494.29539865941223	87.697	0.50531	88.429	88.166	88.671	0.7318					16	9	2	0	0	0	0.4867	1	33443	33443		20.454	0	1	3914100	+		48340	17530	35122	35408	47247	47247					0.08222029477337855
SIGEYLLPGGE	11	Unmodified	_SIGEYLLPGGE_					0	0	0			REV__nc|ENSG00000117385|Q32P28-4|P3H1	REV__nc|ENSG00000117385|Q32P28-4|P3H1	MULTI-SECPEP	A375_MHC_IP_R1	1	567.6900634765625	2	567.787504	1133.56045	-0.33556	-0.00019052	0.072423	4.1121E-05	-0.26313	-0.0001494	567.7878795482726	33.51	0.80889	33.51	33.09	33.898	0					21	15	2	0	0	0	0.84606	1	10858	10858		16.149	0.90062	1	3129900	+		48341	18005	35123	35409	47248	47248					-0.000983018303713834
SIGFAVQQEL	10	Unmodified	_SIGFAVQQEL_					0	0	0		IMPA2|p.R125Q|1|0.19|ENSG00000141401|chr18:12012208-12012208|G/A|missense_variant	IMPA2|p.R125Q|1|0.19|ENSG00000141401|chr18:12012208-12012208|G/A|missense_variant	IMPA2|p.R125Q|1|0.19|ENSG00000141401|chr18:12012208-12012208|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6732177734375	2	546.290214	1090.56587	-0.49074	-0.00026809	0.7461	0.00040759	0.25536	0.0001395	546.2904602121923	57.245	0.30553	57.245	57.059	57.364	0					10	5	3	0	0	0	0.64716	1	20490	20490		17.113	0	1	1695100			48342	14163	35124	35410	47249	47249					0.02421421752092101
SIGFAVRQEL	10	Unmodified	_SIGFAVRQEL_					0	0	0		ENST00000588167.1_1_18:12009921-12028151:+|nuORF;ENST00000383376.9_1_18:12008408-12017827:+|nuORF;nc|ENSG00000141401|O14732-2|IMPA2;ENSG00000141401|ENST00000269159|IMPA2	ENST00000588167.1_1_18:12009921-12028151:+|nuORF	ENST00000588167.1_1_18:12009921-12028151:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	560.6747436523438	2	560.31148	1118.60841	-0.36809	-0.00020625	-0.39878	-0.00022344	-0.76687	-0.00042969	560.3114067843042	62.623	0.45971	62.623	62.403	62.863	0					10	8	2	0	0	0	0.8125	1	22630	22630		18.146	2.2992	1	1733800			48343	5235	35125	35411	47250	47250					0.053848168803369845
SIGFQARI	8	Unmodified	_SIGFQARI_					0	0	0			REV__ENSG00000086288|ENST00000199447|NME8	REV__ENSG00000086288|ENST00000199447|NME8	MULTI-SECPEP	A375_MHC_IP_R2	2	446.1402587890625	2	446.255977	890.497401	-0.26071	-0.00011634	-0.11221	-5.0074E-05	-0.37292	-0.00016642	446.2560787569486	68.851	0.50768	69.586	69.373	69.88	0.73512					11	9	2	0	0	0	0.972	1	26010	26010		4.756	0	1	1527200	+		48344	16851	35126	35412	47251	47251					0.04777221962899603
SIGFQARI	8	Unmodified	_SIGFQARI_					0	0	0			REV__ENSG00000086288|ENST00000199447|NME8	REV__ENSG00000086288|ENST00000199447|NME8	MULTI-MATCH	A375_MHC_IP_R1	1		2	446.255977	890.497401	0.3485	0.00015552	0.12777	5.7017E-05	0.47626	0.00021254	446.25594844123344	69.786	0.45474	69.786	69.579	70.034	0	0.099763	4.0824E-05	NaN	4.756	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	883180	+		48345	16851	35126	35412							0.04777221962899603
SIGGTVAW	8	Unmodified	_SIGGTVAW_					0	0	0		ENST00000461893.5_1_1:1720336-1724757:-|nuORF	ENST00000461893.5_1_1:1720336-1724757:-|nuORF	ENST00000461893.5_1_1:1720336-1724757:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	395.616455078125	2	395.708328	789.402104	-0.62727	-0.00024822	0.82459	0.0003263	0.19732	7.8081E-05	395.70846062220375	33.598	0.65875	34.35	33.992	34.651	0.75225					18	12	2	0	0	0	0.97144	1	11976	11976		14.582	8.8213	1	2163900			48346	12193	35127	35413	47252	47252					-0.0010213122815230236
SIGGVFIKN	9	Unmodified	_SIGGVFIKN_					0	0	0			REV__DAZAP1|p.P121S|1|0.55|ENSG00000071626|chr19:1421205-1421205|C/T|missense_variant	REV__DAZAP1|p.P121S|1|0.55|ENSG00000071626|chr19:1421205-1421205|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	467.6734619140625	2	467.77146	933.528367	-0.70025	-0.00032756	-3.1605	-0.0014784	-3.8608	-0.001806	467.7726780000015	68.169	0.65895	68.169	67.804	68.463	0					32	12	4	0	0	0	0.51106	1	24784	24784		19.257	5.3509	1	3546800	+		48347	15966	35128	35414	47253	47253					0.058943752771256186
SIGKDKLKEV	10	Unmodified	_SIGKDKLKEV_					0	0	0			REV__tr|U7T271|U7T271_FUSNUBMCcircularlypermuteddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00492PE=4SV=1	REV__tr|U7T271|U7T271_FUSNUBMCcircularlypermuteddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00492PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	372.6427001953125	3	372.892284	1115.65502	0.35241	0.00013141	-0.69461	-0.00025902	-0.34221	-0.00012761	372.8920113621826	40.769	0.25253	40.769	40.66	40.913	0					8	4	2	0	0	0	0.93041	1	14031	14031		7.9454	3.4165	1	1051900	+		48348	28724	35129	35415	47254	47254					0.10182256711595983
SIGLAGDHFV	10	Unmodified	_SIGLAGDHFV_					0	0	0			REV__ENST00000533028.7_3_1:100488049-100488157:+|nuORF	REV__ENST00000533028.7_3_1:100488049-100488157:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9800720214844	2	508.263999	1014.51345	-0.64798	-0.00032934	0.056804	2.8872E-05	-0.59117	-0.00030047	508.26393023472133	44.208	0.65783	44.977	44.732	45.39	0.7691					16	12	2	0	0	0	0.76414	1	16510	16510		14.838	10.894	1	1883200	+		48349	25874	35130	35416	47255	47255					0.006768834091417375
SIGLEKAAL	9	Unmodified	_SIGLEKAAL_					0	0	0			REV__ENSG00000048544|ENST00000053468|MRPS10	REV__ENSG00000048544|ENST00000053468|MRPS10	MULTI-MSMS	A375_MHC_IP_R2	2	451.6719970703125	2	451.271293	900.528032	-0.46652	-0.00021053	0.48037	0.00021678	0.013852	6.2509E-06	451.27141051813436	66.069	1.4787	66.807	66.273	67.752	0.73811					55	28	4	0	0	0	0.084766	1	24962	24962		53.404	7.3831	1	27508000	+		48350	16373	35131	35417	47256	47256					0.07378955557271638
SIGLLWQGQK	10	Unmodified	_SIGLLWQGQK_					0	0	0			REV__ENST00000558154.1_1_15:101906377-101922391:-|nuORF	REV__ENST00000558154.1_1_15:101906377-101922391:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	565.7218627929688	2	565.321848	1128.62914	-0.29977	-0.00016947	-0.00080717	-4.5631E-07	-0.30058	-0.00016992	565.3221046266177	52.038	0.50928	52.038	51.728	52.237	0					12	9	2	0	0	0	0.70528	1	18532	18532		20.415	6.7997	1	1550900	+		48351	26134	35132	35418	47257	47257					0.0699740725999618
SIGLTQRR	8	Unmodified	_SIGLTQRR_					0	0	0		ENSG00000283787|ENST00000640310|PRR33	ENSG00000283787|ENST00000640310|PRR33	ENSG00000283787|ENST00000640310|PRR33	MULTI-MSMS	A375_MHC_IP_R1	1	466.177490234375	2	465.777608	929.540663	0.034793	1.6206E-05	-0.1437	-6.6934E-05	-0.10891	-5.0728E-05	465.7774359209808	112.21	2.3376	112.21	111.36	113.7	0					60	45	2	0	0	0	0.77624	1	41448	41448		8.5933	1.304	1	7357800			48352	10051	35133	35419	47258	47258					0.07307411740180214
SIGPISRL	8	Unmodified	_SIGPISRL_					0	0	0		ENST00000335044.6_2_3:47324147-47324234:-|nuORF	ENST00000335044.6_2_3:47324147-47324234:-|nuORF	ENST00000335044.6_2_3:47324147-47324234:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	422.1582336425781	2	421.758352	841.502152	-0.43353	-0.00018285	0.36348	0.0001533	-0.070048	-2.9543E-05	421.75830360119886	58.379	0.6125	59.128	58.929	59.542	0.74895					19	11	2	0	0	0	0.42778	1	22114	22114		69.105	7.503	1	1723700			48353	10802	35134	35420	47259	47259					0.07506106105654453
SIGQPPLPAP	10	Unmodified	_SIGQPPLPAP_					0	0	0		ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	MULTI-SECPEP	A375_MHC_IP_R1	1	488.18707275390625	2	488.776742	975.538931	0.091112	4.4533E-05	0.81491	0.00039831	0.90602	0.00044284	488.776867188187	69.907	0.45474	69.907	69.579	70.034	0					13	8	2	0	0	0	0.64716	1	25253	25253		29.082	1.4528	1	1230900			48354	4416	35135	35421	47260	47260					0.050183579315557836
SIGRHWSF	8	Unmodified	_SIGRHWSF_					0	0	0			REV__ENST00000376214.5_1_9:87285518-87285842:+|nuORF	REV__ENST00000376214.5_1_9:87285518-87285842:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	494.695068359375	2	495.251226	988.487899	-0.36756	-0.00018204	-0.83607	-0.00041407	-1.2036	-0.0005961	495.2509154732896	60.184	0.50866	60.184	59.955	60.464	0					15	9	2	0	0	0	0.94479	1	21746	21746		13.508	0	1	1537000	+		48355	24137	35136	35422	47261	47261					-0.00680546322621467
SIGRIMVSN	9	Unmodified	_SIGRIMVSN_					0	0	0		nc|ENSG00000177398|Q5DID0-4|UMODL1;nc|ENSG00000177398|Q5DID0-2|UMODL1;nc|ENSG00000177398|Q5DID0-3|UMODL1;ENSG00000177398|ENST00000408910|UMODL1	nc|ENSG00000177398|Q5DID0-4|UMODL1	nc|ENSG00000177398|Q5DID0-4|UMODL1	MSMS	A375_MHC_IP_R2	2	488.6765441894531	2	488.765852	975.51715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.187	1	50.941	50.441	51.441	0.75406								0	0	0	0.1521	1	18872	18872		18.146	6.5061	1				48356	14785	35137	35423	47262	47262					0.028412299113597328
SIGSPGFKAVY	11	Unmodified	_SIGSPGFKAVY_					0	0	0		nc|ENSG00000183117|Q96PZ7-2|CSMD1;CSMD1|p.G3420Afs*7|1|0.38|ENSG00000183117|chr8:2950294-2950294|A/-|frameshift_variant;ENSG00000183117|ENST00000635120|CSMD1;nc|ENSG00000183117|Q96PZ7-4|CSMD1;nc|ENSG00000183117|Q96PZ7-3|CSMD1	nc|ENSG00000183117|Q96PZ7-2|CSMD1	nc|ENSG00000183117|Q96PZ7-2|CSMD1	MULTI-SECPEP	A375_MHC_IP_R2	2	563.6997680664062	2	563.300581	1124.58661	-0.93331	-0.00052573	-0.17798	-0.00010026	-1.1113	-0.00062599	563.3003549528647	59.224	1.013	59.971	59.54	60.553	0.74714					36	19	3	0	0	0	0.84606	1	22381	22381		27.629	5.8822	1	7856100			48357	671	35138	35424	47263	47263					0.0293001213176467
SIGSSISEY	9	Unmodified	_SIGSSISEY_					0	0	0		ENSG00000176399|ENST00000325870|DMRTA1	ENSG00000176399|ENST00000325870|DMRTA1	ENSG00000176399|ENST00000325870|DMRTA1	MULTI-MSMS	A375_MHC_IP_R2	2	473.1798095703125	2	471.724372	941.434192	-0.47407	-0.00022363	-0.090703	-4.2787E-05	-0.56478	-0.00026642	471.72427078580506	43.087	0.86047	43.859	43.472	44.333	0.7724					49	16	4	0	0	0	0.6898	2	16038	16038;16041		7.9102	0	1	11409000			48358	8020	35139	35425	47264;47265	47264					-0.03886808335664682
SIGWLWMV	8	Unmodified	_SIGWLWMV_					0	0	0			REV__nc|ENSG00000141458|O15118-2|NPC1	REV__nc|ENSG00000141458|O15118-2|NPC1	MULTI-SECPEP	A375_MHC_IP_R1	1	495.6796875	2	496.257131	990.499709	-0.56759	-0.00028167	-0.03076	-1.5265E-05	-0.59835	-0.00029693	496.25704568958486	86.526	1.1673	86.526	86.121	87.289	0					54	22	4	0	0	0	0.90224	1	31980	31980		13.508	7.3021	1	22969000	+		48359	19270	35140	35426	47266	47266					0.004079343763464749
SIGWLWMV	8	Unmodified	_SIGWLWMV_					0	0	0			REV__nc|ENSG00000141458|O15118-2|NPC1	REV__nc|ENSG00000141458|O15118-2|NPC1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	496.257131	990.499709	-0.29359	-0.0001457	-0.23334	-0.0001158	-0.52693	-0.00026149	496.25694583226243	85.781	1.375	86.517	86.137	87.512	0.73601	-0.0045552	-0.00012729	NaN	8.5933	57	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23876000	+		48360	19270	35140	35426							0.004079343763464749
SIGYISFNGDC	11	Unmodified	_SIGYISFNGDC_					0	0	0		tr|U7SLQ2|U7SLQ2_FUSNUaminodeoxychorismatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02130PE=4SV=1	tr|U7SLQ2|U7SLQ2_FUSNUaminodeoxychorismatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02130PE=4SV=1	tr|U7SLQ2|U7SLQ2_FUSNUaminodeoxychorismatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02130PE=4SV=1	MSMS	A375_MHC_IP_R1	1	588.22900390625	2	588.255514	1174.49647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.8	1	109.8	109.3	110.3	0								0	0	0	0.16138	1	40268	40268		11.495	2.9014	1				48361	29506	35141	35427	47267	47267					-0.08379405258938277
SIHAMDAMLYA	11	Unmodified	_SIHAMDAMLYA_					0	0	0			REV__nc|ENSG00000176974|P34896-4|SHMT1	REV__nc|ENSG00000176974|P34896-4|SHMT1	MULTI-SECPEP	A375_MHC_IP_R2	2	612.21923828125	2	611.783384	1221.55222	-0.4451	-0.00027231	-1.0575	-0.00064698	-1.5026	-0.00091929	611.7827311600308	87.914	0.30627	88.646	88.519	88.825	0.7318					7	5	2	0	0	0	0.84606	1	33409	33409		21.537	0	1	2899500	+		48362	21432	35142	35428	47268	47268					-0.049698953429924586
SIHCLLLTV	9	Unmodified	_SIHCLLLTV_					0	0	0		chr2:241641116-241651010|99|13.28|0.1|7.07|+|2|TE_info:L2a,L2a_dup28829,L2,LINE,donor,-,241640469,241641116|None,ATG4B|1	chr2:241641116-241651010|99|13.28|0.1|7.07|+|2|TE_info:L2a,L2a_dup28829,L2,LINE,donor,-,241640469,241641116|None,ATG4B|1	chr2:241641116-241651010|99|13.28|0.1|7.07|+|2|TE_info:L2a,L2a_dup28829,L2,LINE,donor,-,241640469,241641116|None,ATG4B|1	MSMS	A375_MHC_IP_R2	2	499.7052001953125	2	499.788795	997.563038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.875	1	82.618	82.118	83.118	0.74293								0	0	0	0.1499	1	31101	31101		21.747	1.293	1				48363	464	35143	35429	47269	47269					0.06415875093580325
SIHDLPLF	8	Unmodified	_SIHDLPLF_					0	0	0		ENSG00000094914|ENST00000209873|AAAS;nc|ENSG00000094914|Q9NRG9-2|AAAS	ENSG00000094914|ENST00000209873|AAAS	ENSG00000094914|ENST00000209873|AAAS	MULTI-MSMS	A375_MHC_IP_R1	1	471.6580505371094	2	471.258185	940.501818	-0.33064	-0.00015581	0.0073651	3.4709E-06	-0.32327	-0.00015234	471.25813859959896	79.479	0.61515	79.479	79.061	79.676	0					17	11	2	0	0	0	0.38921	1	28979	28979		53.576	0	1	3155800			48364	2028	35144	35430	47270	47270					0.029186863858058132
SIHDVTFQV	9	Unmodified	_SIHDVTFQV_					0	0	0		IBTK|p.Y927Tfs*4|1|0.31|ENSG00000005700|chr6:82201433-82201433|A/-|frameshift_variant;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;ENSG00000005700|ENST00000306270|IBTK	IBTK|p.Y927Tfs*4|1|0.31|ENSG00000005700|chr6:82201433-82201433|A/-|frameshift_variant	IBTK|p.Y927Tfs*4|1|0.31|ENSG00000005700|chr6:82201433-82201433|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	523.6689453125	2	523.269281	1044.52401	-0.70096	-0.00036679	-0.09543	-4.9936E-05	-0.79639	-0.00041673	523.2693077745295	66.574	1.0208	66.574	66.173	67.194	0					47	19	4	0	0	0	0.011207	1	24065	24065		112.59	64.247	1	16861000			48365	898	35145	35431	47271	47271					0.0035286606357658457
SIHDVTFQV	9	Unmodified	_SIHDVTFQV_					0	0	0		IBTK|p.Y927Tfs*4|1|0.31|ENSG00000005700|chr6:82201433-82201433|A/-|frameshift_variant;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;ENSG00000005700|ENST00000306270|IBTK	IBTK|p.Y927Tfs*4|1|0.31|ENSG00000005700|chr6:82201433-82201433|A/-|frameshift_variant	IBTK|p.Y927Tfs*4|1|0.31|ENSG00000005700|chr6:82201433-82201433|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	523.6688842773438	2	523.269281	1044.52401	-0.73431	-0.00038424	-0.38127	-0.00019951	-1.1156	-0.00058375	523.2691427907532	65.662	0.91568	66.4	66.069	66.985	0.73811					50	17	4	0	0	0	0.021422	1	24861	24861		96.285	45.43	1	24440000			48366	898	35145	35431	47272	47272					0.0035286606357658457
SIHELAVIL	9	Unmodified	_SIHELAVIL_					0	0	0		ENST00000493688.5_1_20:56813265-56820980:-|nuORF;ENST00000497138.5_1_20:56807969-56820980:-|nuORF;ENST00000577667.1_1_18:9557167-9559563:-|nuORF;ENST00000285124.12_1_18:9547789-9562973:-|nuORF;nc|ENSG00000154845|Q8TF05-2|PPP4R1;ENSG00000154845|ENST00000400556|PPP4R1	ENST00000493688.5_1_20:56813265-56820980:-|nuORF;ENST00000285124.12_1_18:9547789-9562973:-|nuORF	ENST00000285124.12_1_18:9547789-9562973:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	498.20001220703125	2	497.800217	993.585882	-0.41849	-0.00020833	-0.16572	-8.2495E-05	-0.58421	-0.00029082	497.8000396129623	91.717	0.71031	92.452	92.222	92.933	0.7345					31	13	3	0	0	0	0.14422	1	34870	34870		52.268	0	1	7886900			48367	6113;12683	35146	35432	47273	47273					0.0888321748270755
SIHETIPLV	9	Unmodified	_SIHETIPLV_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;ENST00000420969.1_1_2:162357792-162360000:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-SECPEP	A375_MHC_IP_R2	2	505.1895751953125	2	504.78985	1007.56515	-0.81201	-0.0004099	0.82982	0.00041888	0.017806	8.9882E-06	504.7898100970343	72.555	0.66115	73.29	73.022	73.684	0.7354					22	12	3	0	0	0	0.050875	1	27525	27525		74.423	26.077	1	5384400			48368	6016	35147	35433	47274	47274					0.061666271030503594
SIHFVNDTSI	10	Unmodified	_SIHFVNDTSI_					0	0	0		ENSG00000185070|ENST00000330753|FLRT2	ENSG00000185070|ENST00000330753|FLRT2	ENSG00000185070|ENST00000330753|FLRT2	MULTI-SECPEP	A375_MHC_IP_R2	2	377.9551696777344	3	378.192623	1131.55604	-0.21488	-8.1268E-05	3.7477	0.0014174	3.5328	0.0013361	378.52861685869834	22.692	0.3063	23.322	23.062	23.368	0.63015					7	5	2	0	0	0	0.90513	1	7172	7172		4.7159	0	1	620130			48369	8638	35148	35434	47275	47275					-0.004477662532735849
SIHHGFRSTE	10	Unmodified	_SIHHGFRSTE_					0	0	0			REV__ENSG00000146410|ENST00000420702|MTFR2	REV__ENSG00000146410|ENST00000420702|MTFR2	MSMS	A375_MHC_IP_R1	1	585.6842651367188	2	585.786161	1169.55777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.76	1	128.76	128.26	129.26	0								0	0	0	0.15158	1	49477	49477		14.838	4.7643	1		+		48370	19533	35149	35435	47276	47276					-0.02022712444681929
SIHLNTYIDF	10	Unmodified	_SIHLNTYIDF_					0	0	0			REV__nc|ENSG00000168843|Q8N475-3|FSTL5	REV__nc|ENSG00000168843|Q8N475-3|FSTL5	MSMS	A375_MHC_IP_R2	2	611.7264404296875	2	611.808771	1221.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.9	1	96.651	96.151	97.151	0.75045								0	0	0	0.15435	1	36421	36421		6.7232	0.99131	1		+		48371	15753	35150	35436	47277	47277					0.001050932978387209
SIHMRNVE	8	Unmodified	_SIHMRNVE_					0	0	0			REV__nc|ENSG00000182541|P53671-2|LIMK2	REV__nc|ENSG00000182541|P53671-2|LIMK2	MSMS	A375_MHC_IP_R1	1	493.1659851074219	2	493.247826	984.481099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.82	1	107.82	107.32	108.32	0								0	0	0	0.16876	1	39557	39557		18.135	0	1		+		48372	21698	35151	35437	47278	47278					-0.011762272655118977
SIHNLVTD	8	Unmodified	_SIHNLVTD_					0	0	0		CHN1|p.D115N|1|0.27|ENSG00000128656|chr2:174878046-174878046|C/T|missense_variant	CHN1|p.D115N|1|0.27|ENSG00000128656|chr2:174878046-174878046|C/T|missense_variant	CHN1|p.D115N|1|0.27|ENSG00000128656|chr2:174878046-174878046|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	451.628662109375	2	449.735074	897.455596	0.078316	3.5221E-05	-0.068119	-3.0635E-05	0.010197	4.5861E-06	449.7349797229635	44.285	0.61521	44.285	44.061	44.676	0					25	11	4	0	0	0	0.77624	1	15423	15423		8.5933	0	1	8357800			48373	389	35152	35438	47279	47279					0.0027662148370382056
SIHPDMPD	8	Unmodified	_SIHPDMPD_					0	0	0		ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81	ENSG00000167716|ENST00000409644|WDR81	ENSG00000167716|ENST00000409644|WDR81	MSMS	A375_MHC_IP_R2	2	456.1473388671875	2	456.20001	910.385467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.76	1	55.511	55.011	56.011	0.75075								0	0	0	0.16876	1	20671	20671		19.439	4.8573	1				48374	7216	35153	35439	47280	47280					-0.07331000176407088
SIHPRLRTI	9	Unmodified	_SIHPRLRTI_					0	0	0		DCHS2|p.G930R|1|0.45|ENSG00000197410|chr4:154322354-154322354|C/T|missense_variant	DCHS2|p.G930R|1|0.45|ENSG00000197410|chr4:154322354-154322354|C/T|missense_variant	DCHS2|p.G930R|1|0.45|ENSG00000197410|chr4:154322354-154322354|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	547.235595703125	2	546.835457	1091.65636	-0.74241	-0.00040597	0.033495	1.8316E-05	-0.70891	-0.00038766	546.8355725579379	32.451	0.40261	32.451	32.282	32.684	0					15	7	3	0	0	0	0.65527	1	10508	10508		17.113	2.2746	1	4089500			48375	716	35154	35440	47281	47281					0.11419935591038666
SIHPVRKRRTQ	11	Unmodified	_SIHPVRKRRTQ_					0	0	0		ENST00000361725.4_1_2:172952933-172953254:+|nuORF	ENST00000361725.4_1_2:172952933-172953254:+|nuORF	ENST00000361725.4_1_2:172952933-172953254:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	690.3143310546875	2	689.412926	1376.8113	-0.48109	-0.00033167	0.34477	0.00023769	-0.13633	-9.3987E-05	689.4130251515027	145.16	0.47908	145.19	144.89	145.37	0.021408					26	19	2	0	0	0	0.73906	1	56675	56675		0.26902	0.26902	1	459070			48376	11048	35155	35441	47282	47282					0.13796559725437874
SIHRAKPVNP	10	Unmodified	_SIHRAKPVNP_					0	0	0			REV__ENST00000506637.2_1_4:81308203-81308479:-|nuORF	REV__ENST00000506637.2_1_4:81308203-81308479:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	559.1470947265625	2	559.825089	1117.63563	-1.1854	-0.00066363	-1.6158	-0.00090455	-2.8012	-0.0015682	559.8237921327213	36.784	0.40751	37.555	37.258	37.665	0.7709					9	7	2	0	0	0	0.93799	1	13332	13332		0.35063	0	1	1561000	+		48377	25560	35156	35442	47283	47283					0.08151345211376793
SIHTQDLYL	9	Unmodified	_SIHTQDLYL_					0	0	0		DOCK7|p.P735L|1|0.59|ENSG00000116641|chr1:62559216-62559216|G/A|missense_variant	DOCK7|p.P735L|1|0.59|ENSG00000116641|chr1:62559216-62559216|G/A|missense_variant	DOCK7|p.P735L|1|0.59|ENSG00000116641|chr1:62559216-62559216|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	546.1835327148438	2	545.282389	1088.55022	-0.9029	-0.00049233	1.0285	0.00056085	0.12565	6.8517E-05	545.2825623830854	67.613	1.0657	67.613	67.194	68.26	0					41	20	3	0	0	0	0.077132	1	24530	24530		54.774	0.94076	1	5805400			48378	785	35157	35443	47284	47284					0.009491352350323723
SIHTVGLYL	9	Unmodified	_SIHTVGLYL_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-SECPEP	A375_MHC_IP_R2	2	502.16583251953125	2	501.784567	1001.55458	-0.87827	-0.0004407	-0.55748	-0.00027973	-1.4357	-0.00072044	502.285296636416	54.302	0.30323	55.053	54.865	55.169	0.75075					10	5	3	0	0	0	0.58271	1	20527	20527		10.074	3.3508	1	811070			48379	9519	35158	35444	47285	47285					0.05386644448606148
SIHYSPQFH	9	Unmodified	_SIHYSPQFH_					0	0	0		ENSG00000130733|ENST00000586748|YIPF2	ENSG00000130733|ENST00000586748|YIPF2	ENSG00000130733|ENST00000586748|YIPF2	MSMS	A375_MHC_IP_R1	1	558.1885986328125	2	558.267073	1114.51959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.982	1	49.982	49.482	50.482	0								0	0	0	0.14851	1	17691	17691		24.021	1.2843	1				48380	4274	35159	35445	47286	47286					-0.033085983593082346
SIIAQCMAL	9	Unmodified	_SIIAQCMAL_					0	0	0			REV__ENST00000366516.5_1_1:245912867-246093251:-|nuORF	REV__ENST00000366516.5_1_1:245912867-246093251:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	475.6599426269531	2	475.245906	948.477259	-0.89406	-0.0004249	-0.6914	-0.00032859	-1.5855	-0.00075348	475.24553616393376	52.071	0.40689	52.823	52.626	53.032	0.75225					12	7	2	0	0	0	0.69504	1	19695	19695		7.9102	2.1497	1	1052700	+		48381	21892	35160	35446	47287	47287					0.0009596691642173028
SIIAQQAEN	9	Unmodified	_SIIAQQAEN_					0	0	0			REV__ENSG00000204815|ENST00000377540|ODAD4	REV__ENSG00000204815|ENST00000377540|ODAD4	MSMS	A375_MHC_IP_R2	2	487.1767578125	2	487.251089	972.487624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.42	1	56.171	55.671	56.671	0.75075								0	0	0	0.15411	1	20935	20935		14.838	0.25658	1		+		48382	22541	35161	35447	47288	47288					0.0002798916684696451
SIIDVVAIMSY	11	Unmodified	_SIIDVVAIMSY_					0	0	0		KCND3|p.P269S|1|0.16|ENSG00000171385|chr1:111981922-111981922|G/A|missense_variant	KCND3|p.P269S|1|0.16|ENSG00000171385|chr1:111981922-111981922|G/A|missense_variant	KCND3|p.P269S|1|0.16|ENSG00000171385|chr1:111981922-111981922|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	404.2620849609375	3	404.21778	1209.63151	0.0050461	2.0397E-06	1.5582	0.00062986	1.5633	0.0006319	404.2183863241583	67.29	0.4048	68.026	67.801	68.205	0.73631					9	7	2	0	0	0	0.98748	1	25420	25420		2.4348	0	1	829940			48383	14194	35162	35448	47289	47289					0.035080748827795105
SIIEKNGFLT	10	Unmodified	_SIIEKNGFLT_					0	0	0		ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	MULTI-SECPEP	A375_MHC_IP_R1	1	561.6427612304688	2	561.313689	1120.61282	-0.40689	-0.00022839	0.32248	0.00018101	-0.084406	-4.7378E-05	561.3141336488953	97.87	0.55959	97.87	97.641	98.2	0					15	10	2	0	0	0	0.46496	1	35975	35975		41.956	2.0059	1	1356700			48384	3345	35163	35449	47290	47290					0.05734281303239186
SIIEQAGRPV	10	Unmodified	_SIIEQAGRPV_					0	0	0			REV__ENSG00000100218|ENST00000216036|RSPH14	REV__ENSG00000100218|ENST00000216036|RSPH14	MULTI-SECPEP	A375_MHC_IP_R2	2	356.9206237792969	3	357.204862	1068.59276	-0.55156	-0.00019702	0.075018	2.6797E-05	-0.47655	-0.00017022	357.2049738968554	28.361	0.81216	29.04	28.401	29.214	0.67857					38	15	4	0	0	0	0.87163	1	9863	9863		3.0723	0	1	9374400	+		48385	17059	35164	35450	47291	47291					0.061205303632732466
SIIFLTERI	9	Unmodified	_SIIFLTERI_					0	0	0			REV__ENST00000339024.8_2_21:30464771-30503236:+|nuORF	REV__ENST00000339024.8_2_21:30464771-30503236:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	546.1997680664062	2	546.326599	1090.63865	-0.83562	-0.00045652	0.10661	5.8246E-05	-0.729	-0.00039827	546.326680734454	39.52	0.60895	40.294	40.118	40.727	0.77451					21	11	2	0	0	0	0.77948	1	14636	14636		6.2058	3.4706	1	2493600	+		48386	23707	35165	35451	47292	47292					0.09695175545516577
SIIFTQTQLQ	10	Unmodified	_SIIFTQTQLQ_					0	0	0			REV__MLT1F1_dup2550|chr15:38327307-38327857:+|1.1247313495590072|0.3225169213127924|1.8|472.0|29|2|anti-sense	REV__MLT1F1_dup2550|chr15:38327307-38327857:+|1.1247313495590072|0.3225169213127924|1.8|472.0|29|2|anti-sense	MULTI-MSMS	A375_MHC_IP_R1	1	590.7431640625	2	589.824421	1177.63429	-0.29557	-0.00017434	0.10071	5.9402E-05	-0.19486	-0.00011493	589.8244004606614	98.812	0.45778	98.812	98.507	98.964	0					13	8	2	0	0	0	0.6502	1	36272	36272		17.113	0	1	1524300	+		48387	27019	35166	35452	47293	47293					0.052576663319541694
SIIGHFWPA	9	Unmodified	_SIIGHFWPA_					0	0	0			REV__ENSG00000178217|ENST00000646907|SH2D4B	REV__ENSG00000178217|ENST00000646907|SH2D4B	MSMS	A375_MHC_IP_R2	2	514.1897583007812	2	514.271627	1026.5287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.475	1	44.247	43.747	44.747	0.7724								0	0	0	0.15486	1	16198	16198		11.64	0.81637	1		+		48388	21495	35167	35453	47294	47294					0.01649794996978926
SIIGRLLEV	9	Unmodified	_SIIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	A375_MHC_IP_R1	1	500.7135314941406	2	500.313492	998.612431	-0.041729	-2.0878E-05	-0.050236	-2.5134E-05	-0.091965	-4.6011E-05	500.3134598673654	112.51	1.675	112.51	112.13	113.8	0					97	32	5	0	0	0	0.052747	1	41581	41581		63.227	17.528	1	282950000			48389	7718	35168	35454	47295	47295					0.11306906374034043
SIIGRLLEV	9	Unmodified	_SIIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-SECPEP	A375_MHC_IP_R2	2	500.71368408203125	2	500.313492	998.612431	-0.39039	-0.00019532	0.013595	6.8016E-06	-0.3768	-0.00018852	500.3134860703399	111.35	2.0466	112.09	111.65	113.69	0.73692					104	39	5	0	0	0	0.054506	1	41914	41914		81.915	11.583	1	207040000			48390	7718	35168	35454	47296	47296					0.11306906374034043
SIIGRLMLVEE	11	Unmodified	_SIIGRLMLVEE_					0	0	0		nc|ENSG00000197283|Q96PV0-3|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1	nc|ENSG00000197283|Q96PV0-3|SYNGAP1	nc|ENSG00000197283|Q96PV0-3|SYNGAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	630.53076171875	2	630.355031	1258.69551	-0.61869	-0.00039	-4.2865	-0.002702	-4.9052	-0.003092	630.3527193036862	75.287	0.25238	75.287	75.211	75.464	0					6	4	2	0	0	0	0.92392	1	27424	27424		22.658	3.4011	1	1095500			48391	9140	35169	35455	47297	47297					0.0765085503969658
SIIHPQVTF	9	Unmodified	_SIIHPQVTF_					0	0	0		nc|ENSG00000293412|O75343|GUCY1B2	nc|ENSG00000293412|O75343|GUCY1B2	nc|ENSG00000293412|O75343|GUCY1B2	MULTI-SECPEP	A375_MHC_IP_R1	1	521.6905517578125	2	521.290017	1040.56548	-0.36836	-0.00019202	0.23489	0.00012245	-0.13347	-6.9577E-05	521.2898650049588	88.789	0.35712	88.789	88.612	88.97	0					13	6	3	0	0	0	0.46045	1	32636	32636		17.113	4.0704	1	2004100			48392	14964	35170	35456	47298	47298					0.0468204682290434
SIIIFWVVI	9	Unmodified	_SIIIFWVVI_					0	0	0		ENST00000370803.7_1_X:133561863-133561959:+|nuORF	ENST00000370803.7_1_X:133561863-133561959:+|nuORF	ENST00000370803.7_1_X:133561863-133561959:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	363.26104736328125	3	363.895078	1088.6634	-0.39839	-0.00014497	1.4928	0.00054324	1.0944	0.00039826	363.8958788035803	22.732	0.35665	23.362	23.164	23.521	0.63014					9	6	2	0	0	0	0.78348	1	7252	7252		0.96228	0	1	998520			48393	11159	35171	35457	47299	47299					0.12261855418887535
SIIITFHNEAR	11	Unmodified	_SIIITFHNEAR_					0	0	0		ENST00000464038.5_1_2:31155024-31369832:-|nuORF;ENST00000455477.5_1_2:31155024-31348064:-|nuORF;nc|ENSG00000158089|Q96FL9-4|GALNT14;ENSG00000158089|ENST00000349752|GALNT14;nc|ENSG00000158089|Q96FL9-3|GALNT14	ENST00000464038.5_1_2:31155024-31369832:-|nuORF	ENST00000464038.5_1_2:31155024-31369832:-|nuORF	MSMS	A375_MHC_IP_R1	1	434.1000671386719	3	434.238455	1299.69353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.913	1	77.913	77.413	78.413	0								0	0	0	0.16302	1	28435	28435		1.2148	0	1				48394	6284	35172	35458	47300	47300					0.05567562346118393
SIIKMQSF	8	Unmodified	_SIIKMQSF_					0	0	0			REV__ENSG00000186020|ENST00000591340|ZNF529	REV__ENSG00000186020|ENST00000591340|ZNF529	MULTI-SECPEP	A375_MHC_IP_R2	2	476.6845397949219	2	477.259871	952.505189	-0.83824	-0.00040006	-0.33869	-0.00016164	-1.1769	-0.0005617	477.2596784970993	60.435	0.51039	61.18	60.903	61.414	0.74504					15	9	2	0	0	0	0.6033	1	22877	22877		32.786	7.3864	1	1818700	+		48395	21939	35173	35459	47301	47301					0.027036131681711595
SIINEVEDDSY	11	Unmodified	_SIINEVEDDSY_					0	0	0			REV__DNAH9|p.S4145Ffs*44|1|0.38|ENSG00000007174|chr17:11934016-11934016|C/-|frameshift_variant	REV__DNAH9|p.S4145Ffs*44|1|0.38|ENSG00000007174|chr17:11934016-11934016|C/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	642.2160034179688	2	642.285522	1282.55649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.166	1	56.166	55.666	56.666	0								0	0	0	0.16191	1	20115	20115		8.7454	2.5396	1		+		48396	16019	35174	35460	47302	47302					-0.07348436114739343
SIIPFLEPL	9	Unmodified	_SIIPFLEPL_					0	0	0		ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	MSMS	A375_MHC_IP_R1	1	514.7050170898438	2	514.804968	1027.59538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.924	1	93.924	93.424	94.424	0								0	0	0	0.1521	1	34523	34523		18.135	2.3668	1				48397	6716	35175	35461	47303	47303					0.08268985768222592
SIIPHRGLSL	10	Unmodified	_SIIPHRGLSL_					0	0	0			REV__ENSG00000154007|ENST00000284142|ASB17	REV__ENSG00000154007|ENST00000284142|ASB17	MULTI-SECPEP	A375_MHC_IP_R1	1	546.2486572265625	2	546.82984	1091.64513	-0.6771	-0.00037026	0.48248	0.00026383	-0.19462	-0.00010642	547.3317683407072	84.015	0.25372	84.015	83.937	84.191	0					5	4	2	0	0	0	0.91909	1	30799	30799		2.9952	0	1	649190	+		48398	19861	35176	35462	47304	47304					0.10297113496903876
SIIPKLFKFEG	11	Unmodified	_SIIPKLFKFEG_					0	0	0			REV__PCDHB5|p.P771S|1|0.32|ENSG00000113209|chr5:141137745-141137745|C/T|missense_variant	REV__PCDHB5|p.P771S|1|0.32|ENSG00000113209|chr5:141137745-141137745|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	426.96435546875	3	426.920063	1277.73836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.558	1	20.168	19.668	20.668	0.61029								0	0	0	0.16247	1	6020	6020		5.8681	1.1522	1		+		48399	27736	35177	35463	47305	47305					0.11059993159437909
SIIPPLFTV	9	Unmodified	_SIIPPLFTV_					0	0	0		ENST00000447375.1_1_X:153063080-153063885:+|nuORF;ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4	ENST00000447375.1_1_X:153063080-153063885:+|nuORF	ENST00000447375.1_1_X:153063080-153063885:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	987.3138427734375	1	986.592096	985.584819	0.065871	6.4988E-05	0.19436	0.00019175	0.26023	0.00025674	986.5920835043394	133.11	0.45688	133.27	133.15	133.6	0.16487					16	8	4	0	0	0	0.047602	1	52403	52403		65.235	3.8776	1	34153000			48400	8322	35178	35464	47306	47306					0.09145003113815164
SIIPPLFTV	9	Unmodified	_SIIPPLFTV_					0	0	0		ENST00000447375.1_1_X:153063080-153063885:+|nuORF;ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4	ENST00000447375.1_1_X:153063080-153063885:+|nuORF	ENST00000447375.1_1_X:153063080-153063885:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	986.592096	985.584819	-0.07327	-7.2288E-05	-0.29501	-0.00029106	-0.36828	-0.00036334	986.591649655975	133.28	0.25618	133.28	133.15	133.41	0	0.0033262	-0.00030575	NaN	65.235	14	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36452000			48401	8322	35178	35464							0.09145003113815164
SIIPPRLLN	9	Unmodified	_SIIPPRLLN_					0	0	0			REV__ENSG00000102104|ENST00000379984|RS1	REV__ENSG00000102104|ENST00000379984|RS1	MULTI-SECPEP	A375_MHC_IP_R1	1	512.1608276367188	2	511.821484	1021.62842	-0.37294	-0.00019088	-0.32539	-0.00016654	-0.69833	-0.00035742	511.821306287991	78.257	1.9796	78.257	76.981	78.96	0					56	38	2	0	0	0	0.50702	1	28150	28150		25.399	6.1423	1	2208700	+		48402	17206	35179	35465	47307	47307					0.11846612610941065
SIISNLITV	9	Unmodified	_SIISNLITV_					0	0	0		ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-SECPEP	A375_MHC_IP_R1	1	959.1296997070312	1	959.577174	958.569897	0.16419	0.00015755	-1.7718	-0.0017002	-1.6076	-0.0015426	959.5755015745094	128.46	0.25258	128.46	128.33	128.58	0					8	4	2	0	0	0	0.083712	1	49366	49366		65.235	2.6623	1	14283000			48403	4468	35180	35466	47308	47308					0.0889551124580521
SIISNLITV	9	Unmodified	_SIISNLITV_					0	0	0		ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MSMS	A375_MHC_IP_R2	2	480.6921691894531	2	480.292225	958.569897	-0.63183	-0.00030346	-1.0475	-0.0005031	-1.6793	-0.00080657	480.29160638576724	128.13	0.56091	128.37	128.14	128.71	0.23946					17	10	2	0	0	0	0.0092471	1	50324	50324		103.35	17.712	1	11769000			48404	4468	35180	35466	47309	47309					0.0889551124580521
SIISNLPSWIY	11	Unmodified	_SIISNLPSWIY_					0	0	0		ENST00000533802.5_2_11:43855633-43876795:+|nuORF;ENST00000533090.6_2_11:43852474-43876795:+|nuORF;ENSG00000149084|ENST00000278353|HSD17B12	ENST00000533802.5_2_11:43855633-43876795:+|nuORF	ENST00000533802.5_2_11:43855633-43876795:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	646.34130859375	2	646.847896	1291.68124	-0.33059	-0.00021384	-0.1013	-6.5524E-05	-0.43188	-0.00027936	646.8479019884945	100.77	0.65753	100.77	100.48	101.14	0					23	12	3	0	0	0	0.98748	1	37130	37130		8.7454	0	1	2940800			48405	5780	35181	35467	47310	47310					0.04706525883102586
SIITLLFVS	9	Unmodified	_SIITLLFVS_					0	0	0			REV__nc|ENSG00000174600|Q99788-2|CMKLR1	REV__nc|ENSG00000174600|Q99788-2|CMKLR1	MSMS	A375_MHC_IP_R1	1	496.7040100097656	2	496.804968	991.595384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.89	1	115.89	115.39	116.39	0								0	0	0	0.15486	1	42502	42502		7.2892	0	1		+		48406	21292	35182	35468	47311	47311					0.09924985768248007
SIIVIYYINL	10	Unmodified	_SIIVIYYINL_					0	0	0			REV__ENSG00000157103|ENST00000287766|SLC6A1	REV__ENSG00000157103|ENST00000287766|SLC6A1	MULTI-SECPEP	A375_MHC_IP_R2	2	404.9642028808594	3	404.240914	1209.70091	-0.21834	-8.8262E-05	-3.5869	-0.00145	-3.8052	-0.0015382	404.24000799303866	35.242	0.55549	36.005	35.677	36.233	0.76338					17	10	3	0	0	0	0.9269	1	12651	12651		1.7423	0.14999	1	912100	+		48407	20011	35183	35469	47312	47312					0.10444901893856695
SIIVIYYINL	10	Unmodified	_SIIVIYYINL_					0	0	0			REV__ENSG00000157103|ENST00000287766|SLC6A1	REV__ENSG00000157103|ENST00000287766|SLC6A1	MULTI-MATCH	A375_MHC_IP_R1	1		3	404.240914	1209.70091	-0.55875	-0.00022587	-2.1572	-0.00087203	-2.7159	-0.0010979	404.57424420830245	36.231	0.40567	36.231	36.084	36.489	0	0.113	0.00066203	NaN	3.3196	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	885470	+		48408	20011	35183	35469							0.10444901893856695
SIIWRILSL	9	Unmodified	_SIIWRILSL_					0	0	0		ENST00000497317.5_1_1:155141918-155145314:-|nuORF	ENST00000497317.5_1_1:155141918-155145314:-|nuORF	ENST00000497317.5_1_1:155141918-155145314:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	367.9657897949219	3	367.565732	1099.67537	0.21933	8.0617E-05	0.41268	0.00015169	0.63201	0.0002323	367.5657640794107	76.042	0.60608	76.042	75.815	76.421	0					24	11	3	0	0	0	0.62591	1	27738	27738		13.615	0.74226	1	3172600			48409	12741	35184	35470	47313	47313					0.1295147216208079
SIIWRILSL	9	Unmodified	_SIIWRILSL_					0	0	0		ENST00000497317.5_1_1:155141918-155145314:-|nuORF	ENST00000497317.5_1_1:155141918-155145314:-|nuORF	ENST00000497317.5_1_1:155141918-155145314:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	367.565732	1099.67537	0.1186	4.3593E-05	0.016612	6.1059E-06	0.13521	4.9699E-05	367.56567392408505	75.137	0.50573	75.874	75.467	75.973	0.73752	-0.083691	-0.00017507	NaN	13.615	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2429800			48410	12741	35184	35470							0.1295147216208079
SIKATCFAQL	10	Unmodified	_SIKATCFAQL_					0	0	0			REV__ENST00000265138.3_1_5:90678978-90679023:-|nuORF	REV__ENST00000265138.3_1_5:90678978-90679023:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	541.0490112304688	2	541.289159	1080.56377	-0.84803	-0.00045903	-1.8383	-0.00099504	-2.6863	-0.0014541	541.2872925427135	77.619	0.45847	78.362	78.113	78.572	0.74293					16	8	3	0	0	0	0.42311	1	29501	29501		32.786	0.4802	1	2374600	+		48411	23245	35185	35471	47314	47314					0.026706697426106984
SIKDISFHL	9	Unmodified	_SIKDISFHL_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-SECPEP	A375_MHC_IP_R1	1	530.1951904296875	2	530.295299	1058.57605	-0.56006	-0.000297	1.1496	0.00060963	0.58954	0.00031263	530.2958323762676	59.573	0.86295	59.573	59.143	60.006	0					25	16	2	0	0	0	0.69381	1	21380	21380		15.847	0	1	4265100			48412	2480	35186	35472	47315	47315					0.04910029477309763
SIKEDRLY	8	Unmodified	_SIKEDRLY_					0	0	0			REV__tr|U7SV00|U7SV00_FUSNUCardiolipinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01072PE=3SV=1	REV__tr|U7SV00|U7SV00_FUSNUCardiolipinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01072PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	513.2948608398438	2	512.277106	1022.53966	-0.41748	-0.00021387	1.3034	0.00066771	0.88593	0.00045384	512.2780121122859	42.208	0.45421	42.208	41.982	42.436	0					19	8	3	0	0	0	0.73946	1	14654	14654		23.148	0	1	3477800	+		48413	28575	35187	35473	47316	47316					0.029291525806002028
SIKEGRNIF	9	Unmodified	_SIKEGRNIF_					0	0	0			REV__tr|U7STC2|U7STC2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01297PE=4SV=1	REV__tr|U7STC2|U7STC2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01297PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	531.5969848632812	2	532.298373	1062.58219	-0.83287	-0.00044334	-0.30904	-0.0001645	-1.1419	-0.00060784	532.2984505162417	26.968	0.55219	26.968	26.728	27.28	0					16	10	2	0	0	0	0.76187	1	8187	8187		3.9444	0	1	1921000	+		48414	28473	35188	35474	47317	47317					0.053405477088290354
SIKELNERW	9	Unmodified	_SIKELNERW_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	A375_MHC_IP_R1	1	392.6121520996094	3	392.212017	1173.61422	0.16227	6.3643E-05	0.22605	8.8661E-05	0.38832	0.0001523	392.21202597280734	40.765	1.0131	40.765	40.151	41.164	0					40	19	3	0	0	0	0.0042961	1	14002	14002		115.06	61.742	1	14148000			48415	9183	35189	35475	47318	47318					0.034359153920149765
SIKELNERW	9	Unmodified	_SIKELNERW_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-SECPEP	A375_MHC_IP_R1	1	588.2144775390625	2	587.814387	1173.61422	-0.24084	-0.00014157	0.06642	3.9042E-05	-0.17442	-0.00010253	587.8144100836777	40.74	0.50434	40.74	40.509	41.013	0					26	9	4	0	0	0	0.15393	1	14026	14026		66.683	40.415	1	9123900			48416	9183	35189	35475	47319	47319					0.034359153920149765
SIKELNERW	9	Unmodified	_SIKELNERW_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-SECPEP	A375_MHC_IP_R2	2	392.9463806152344	3	392.212017	1173.61422	-0.23221	-9.1077E-05	0.06971	2.7341E-05	-0.1625	-6.3736E-05	392.21205090288544	39.909	0.71135	40.683	40.32	41.031	0.77451					21	13	2	0	0	0	0.010039	1	14755	14755		115.06	69.037	1	14125000			48417	9183	35189	35475	47320	47320					0.034359153920149765
SIKELNERW	9	Unmodified	_SIKELNERW_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-SECPEP	A375_MHC_IP_R2	2	588.2142333984375	2	587.814387	1173.61422	-0.6126	-0.00036009	0.25462	0.00014967	-0.35798	-0.00021043	587.8144281175493	39.893	0.71135	40.667	40.32	41.031	0.77451					27	13	3	0	0	0	0.091861	1	14769	14769		79.427	37.587	1	6431900			48418	9183	35189	35475	47321	47321					0.034359153920149765
SIKERLKIPY	10	Unmodified	_SIKERLKIPY_					0	0	0		tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1	tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1	tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1	MSMS	A375_MHC_IP_R2	2	623.7029418945312	2	623.87953	1245.74451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.86	1	121.31	120.81	121.81	0.44488								0	0	0	0.1552	1	46168	46168		3.9444	0	1				48419	30049	35190	35476	47322	47322					0.13146511390982596
SIKGGSPLIF	10	Unmodified	_SIKGGSPLIF_					0	0	0			REV__MMAB|p.S180L|1|0.54|ENSG00000139428|chr12:109561085-109561085|G/A|missense_variant	REV__MMAB|p.S180L|1|0.54|ENSG00000139428|chr12:109561085-109561085|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	510.2002868652344	2	509.800217	1017.58588	-0.5725	-0.00029186	0.72505	0.00036963	0.15255	7.7772E-05	509.80074358128644	86.856	0.50622	86.856	86.527	87.034	0					13	9	2	0	0	0	0.73104	1	31882	31882		24.991	0	1	2524700	+		48420	19156	35191	35477	47323	47323					0.07779217482720924
SIKGQRKKKY	10	Unmodified	_SIKGQRKKKY_					0	0	0			REV__SH3GL2|p.P179S|1|0.49|ENSG00000107295|chr9:17789461-17789461|C/T|missense_variant	REV__SH3GL2|p.P179S|1|0.49|ENSG00000107295|chr9:17789461-17789461|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	618.3353271484375	2	618.382771	1234.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.613	1	100.38	99.876	100.88	0.76278								0	0	0	0.15591	1	37784	37784		1.6526	0	1		+		48421	27958	35192	35478	47324	47324					0.14300449342363208
SIKIELESKRF	11	Unmodified	_SIKIELESKRF_					0	0	0			REV__PCDHGA12|p.E135K|1|0.28|ENSG00000253159|chr5:141431162-141431162|G/A|missense_variant	REV__PCDHGA12|p.E135K|1|0.28|ENSG00000253159|chr5:141431162-141431162|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	450.6453857421875	3	450.59776	1348.77145	-0.57296	-0.00025817	1.1657	0.00052525	0.59273	0.00026708	450.598283279011	23.576	0.30354	24.206	24.029	24.333	0.63014					7	5	2	0	0	0	0.7353	1	7524	7524		3.8459	1.2147	1	1696600	+		48422	27740	35193	35479	47325	47325					0.11101575211500858
SIKITKDH	8	Unmodified	_SIKITKDH_					0	0	0			REV__tr|U7SMX2|U7SMX2_FUSNUdTMPkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01731PE=3SV=1	REV__tr|U7SMX2|U7SMX2_FUSNUdTMPkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01731PE=3SV=1	MSMS	A375_MHC_IP_R1	1	471.17120361328125	2	471.274367	940.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.383	1	32.383	31.883	32.883	0								0	0	0	0.16876	1	10458	10458		5.2307	0	1		+		48423	28310	35194	35480	47326	47326					0.061534737887996016
SIKKKDATIV	10	Unmodified	_SIKKKDATIV_					0	0	0			REV__tr|U7SSF6|U7SSF6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01616PE=4SV=1	REV__tr|U7SSF6|U7SSF6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01616PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	552.2440185546875	2	551.845156	1101.67576	-0.75579	-0.00041708	-0.58092	-0.00032058	-1.3367	-0.00073766	551.8448682447754	86.159	0.40483	86.159	85.971	86.376	0					14	7	3	0	0	0	0.91556	1	31589	31589		14.838	4.7643	1	2762700	+		48424	28427	35195	35481	47327	47327					0.12898847091264543
SIKKKIKELKF	11	Unmodified	_SIKKKIKELKF_					0	0	0		nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3	nc|ENSG00000139734|Q9NSV4-2|DIAPH3	nc|ENSG00000139734|Q9NSV4-2|DIAPH3	MSMS	A375_MHC_IP_R1	1	681.6277465820312	2	681.44758	1360.88061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.21	1	93.21	92.71	93.71	0								0	0	0	0.16354	1	34261	34261		0.30703	0	1				48425	5107	35196	35482	47328	47328					0.2146020590162152
SIKKNFIVL	9	Unmodified	_SIKKNFIVL_					0	0	0			REV__ENSG00000145220|ENST00000343470|LYAR	REV__ENSG00000145220|ENST00000343470|LYAR	MULTI-SECPEP	A375_MHC_IP_R1	1	531.7391357421875	2	531.33951	1060.66447	-0.59539	-0.00031635	-0.38782	-0.00020606	-0.98321	-0.00052242	531.339325981616	75.287	0.4537	75.287	75.11	75.564	0					15	8	2	0	0	0	0.59098	1	27457	27457		16.149	0	1	2113900	+		48426	19466	35197	35483	47329	47329					0.13656069787793967
SIKKNFIVL	9	Unmodified	_SIKKNFIVL_					0	0	0			REV__ENSG00000145220|ENST00000343470|LYAR	REV__ENSG00000145220|ENST00000343470|LYAR	MULTI-MSMS	A375_MHC_IP_R2	2	354.96197509765625	3	354.562099	1060.66447	-0.22839	-8.0977E-05	0.92995	0.00032973	0.70157	0.00024875	354.5620048996945	74.145	0.86607	74.883	74.449	75.315	0.73751					28	12	3	0	0	0	0.67332	1	28155	28155		6.1918	1.2948	1	2033600	+		48427	19466	35197	35483	47330	47330					0.13656069787793967
SIKKVPKKLIY	11	Unmodified	_SIKKVPKKLIY_					0	0	0		tr|U7SJJ5|U7SJJ5_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02072PE=4SV=1	tr|U7SJJ5|U7SJJ5_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02072PE=4SV=1	tr|U7SJJ5|U7SJJ5_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02072PE=4SV=1	MSMS	A375_MHC_IP_R1	1	658.9068603515625	2	658.936848	1315.85914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.4	1	105.4	104.9	105.9	0								0	0	0	0.16297	1	38696	38696		3.2813	0.28607	1				48428	29457	35198	35484	47331	47331					0.2138482087293596
SIKKWQRDL	9	Unmodified	_SIKKWQRDL_					0	0	0			REV__ENST00000515592.1_1_5:140041093-140041799:+|nuORF	REV__ENST00000515592.1_1_5:140041093-140041799:+|nuORF	MSMS	A375_MHC_IP_R1	1	391.9549865722656	3	391.89614	1172.66659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.691	1	40.691	40.191	41.191	0								0	0	0	0.15253	1	14000	14000		17.443	3.0373	1		+		48429	17767	35199	35485	47332	47332					0.08716498525609495
SIKLFSTDL	9	Unmodified	_SIKLFSTDL_					0	0	0			REV__LMOD3|p.V230I|1|0.46|ENSG00000163380|chr3:69119667-69119667|C/T|missense_variant	REV__LMOD3|p.V230I|1|0.46|ENSG00000163380|chr3:69119667-69119667|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	511.6995849609375	2	512.289682	1022.56481	-0.82954	-0.00042496	-2.6386	-0.0013517	-3.4682	-0.0017767	512.2861125946904	67.6	0.15382	67.6	67.5	67.654	0					4	2	2	0	0	0	0.46045	1	24475	24475		17.113	0	1	207170	+		48430	26935	35200	35486	47333	47333					0.05443207383189019
SIKLISKQANK	11	Unmodified	_SIKLISKQANK_					0	0	0		CBLL1|p.P27S|1|0.32|ENSG00000105879|chr7:107748945-107748945|C/T|missense_variant	CBLL1|p.P27S|1|0.32|ENSG00000105879|chr7:107748945-107748945|C/T|missense_variant	CBLL1|p.P27S|1|0.32|ENSG00000105879|chr7:107748945-107748945|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	411.1317443847656	3	410.590717	1228.75032	-0.26789	-0.00011	-0.36389	-0.00014941	-0.63178	-0.0002594	410.924604648407	37.58	0.30766	38.351	38.171	38.479	0.7709					7	5	2	0	0	0	0.99945	1	13750	13750		4.1166	0.27072	1	1381000			48431	302	35201	35487	47334	47334					0.14509609902643206
SIKLLSTEL	9	Unmodified	_SIKLLSTEL_					0	0	0			REV__ENST00000487863.5_1_19:53056575-53056806:+|nuORF	REV__ENST00000487863.5_1_19:53056575-53056806:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	502.1716003417969	2	502.305332	1002.59611	-0.94188	-0.00047311	0.30899	0.00015521	-0.63288	-0.0003179	502.30533198983693	57.645	0.50888	58.394	58.12	58.629	0.74894					15	9	3	0	0	0	0.46045	1	21755	21755		29.082	0	1	1907400	+		48432	25342	35202	35488	47335	47335					0.09491780417272366
SIKLWRKE	8	Unmodified	_SIKLWRKE_					0	0	0		CFAP69|p.L661S|1|0.35|ENSG00000105792|chr7:90299991-90299991|T/C|missense_variant	CFAP69|p.L661S|1|0.35|ENSG00000105792|chr7:90299991-90299991|T/C|missense_variant	CFAP69|p.L661S|1|0.35|ENSG00000105792|chr7:90299991-90299991|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	354.28173828125	3	353.881831	1058.62366	0.27108	9.5931E-05	-0.41874	-0.00014818	-0.14765	-5.2252E-05	353.8816409029559	48.248	0.81067	48.248	47.97	48.78	0					35	15	4	0	0	0	0.17037	1	16977	16977		70.332	1.5721	1	23414000			48433	374	35203	35489	47336	47336					0.09669728468156791
SIKLYEAVP	9	Unmodified	_SIKLYEAVP_					0	0	0			REV__nc|ENSG00000131236|Q01518-2|CAP1	REV__nc|ENSG00000131236|Q01518-2|CAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	510.6703186035156	2	510.292225	1018.5699	-0.88352	-0.00045085	0.41589	0.00021222	-0.46763	-0.00023863	510.2925406008288	66.417	0.5126	67.153	66.932	67.445	0.73631					13	9	2	0	0	0	0.53748	1	25257	25257		18.146	0	1	799620	+		48434	18596	35204	35490	47337	47337					0.06135511245804537
SIKNQKYNV	9	Unmodified	_SIKNQKYNV_					0	0	0		ATP9B|p.N133Y|1|0.25|ENSG00000166377|chr18:79110458-79110458|A/T|missense_variant;ENST00000590271.5_1_18:76847676-76954399:+|nuORF;nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B	ATP9B|p.N133Y|1|0.25|ENSG00000166377|chr18:79110458-79110458|A/T|missense_variant	ATP9B|p.N133Y|1|0.25|ENSG00000166377|chr18:79110458-79110458|A/T|missense_variant	MSMS	A375_MHC_IP_R1	1	365.26092529296875	3	365.204862	1092.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.345	1	25.345	24.845	25.845	0								0	0	0	0.15142	1	7383	7383		13.615	3.4643	1				48435	213	35205	35491	47338	47338					0.050165303632638825
SIKNWQLYL	9	Unmodified	_SIKNWQLYL_					0	0	0			REV__nc|ENSG00000198739|Q86VH5-2|LRRTM3	REV__nc|ENSG00000198739|Q86VH5-2|LRRTM3	MULTI-MSMS	A375_MHC_IP_R1	1	583.7210083007812	2	582.824224	1163.63389	0.17268	0.00010064	-1.8958	-0.0011049	-1.7232	-0.0010043	582.823160687086	112.97	1.0641	112.97	112.53	113.6	0					45	20	3	0	0	0	0.1478	1	41369	41369		42.095	4.1206	1	7267300	+		48436	22407	35206	35492	47339	47339					0.05862291402763731
SIKNYHPKI	9	Unmodified	_SIKNYHPKI_					0	0	0		nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-SECPEP	A375_MHC_IP_R2	2	366.64495849609375	3	367.213469	1098.61858	-0.0016608	-6.0986E-07	0.16258	5.9703E-05	0.16092	5.9093E-05	367.5479258849131	35.922	0.35572	36.686	36.486	36.842	0.76338					9	6	2	0	0	0	0.62767	1	13006	13006		7.609	1.8255	1	1261600			48437	6175	35207	35493	47340	47340					0.07321424605561333
SIKRRHLVLKK	11	Unmodified	_SIKRRHLVLKK_					0	0	0			REV__ENST00000520868.5_1_8:101715520-101715586:-|nuORF	REV__ENST00000520868.5_1_8:101715520-101715586:-|nuORF	MSMS	A375_MHC_IP_R2	2	459.67950439453125	3	459.977017	1376.90922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.038	1	75.775	75.275	76.275	0.73752								0	0	0	0.1636	1	28482	28482		0	0	1		+		48438	25710	35208	35494	47341	47341					0.2358436832141706
SIKRWSLKL	9	Unmodified	_SIKRWSLKL_					0	0	0		ENST00000529611.5_1_11:82985776-82989818:-|nuORF	ENST00000529611.5_1_11:82985776-82989818:-|nuORF	ENST00000529611.5_1_11:82985776-82989818:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	378.2610778808594	3	377.572998	1129.69716	0.022067	8.3319E-06	1.3381	0.00050524	1.3602	0.00051357	377.5730530066848	41.589	0.81556	41.589	41.317	42.132	0					37	15	4	0	0	0	0.73141	1	14283	14283		4.1895	0.60244	1	3859600			48439	13132	35209	35495	47342	47342					0.13750276910650427
SIKSRDGLSP	10	Unmodified	_SIKSRDGLSP_					0	0	0			REV__nc|ENSG00000184507|Q86Y26-2|NUTM1	REV__nc|ENSG00000184507|Q86Y26-2|NUTM1	MSMS	A375_MHC_IP_R2	2	530.343994140625	2	530.293288	1058.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.36	1	55.11	54.61	55.61	0.75075								0	0	0	0.14983	1	20512	20512		18.146	1.2041	1		+		48440	21823	35210	35496	47343	47343					0.04507939983614051
SIKSVVSYW	9	Unmodified	_SIKSVVSYW_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000196862|ENST00000408999|RGPD4	MULTI-SECPEP	A375_MHC_IP_R1	1	535.1895141601562	2	534.78985	1067.56515	-0.66268	-0.00035439	-3.3671	-0.0018007	-4.0297	-0.0021551	534.7897869574538	79.58	0.61373	79.58	79.265	79.879	0					40	11	5	0	0	0	0.30925	1	29052	29052		41.956	32.608	1	5245300			48441	8657;9090;6015	35211	35497	47344	47344					0.034066271030496864
SIKTTLFRF	9	Unmodified	_SIKTTLFRF_					0	0	0			REV__nc|ENSG00000163749|Q5M9N0-3|CCDC158	REV__nc|ENSG00000163749|Q5M9N0-3|CCDC158	MULTI-MSMS	A375_MHC_IP_R1	1	371.9537658691406	3	371.553603	1111.63898	0.36784	0.00013667	-0.31164	-0.00011579	0.056208	2.0884E-05	371.5534180488198	77.742	0.51029	77.742	77.436	77.946	0					22	9	3	0	0	0	0.6324	1	28346	28346		8.9762	1.0308	1	1885000	+		48442	27320	35212	35498	47345	47345					0.08762595265375239
SIKTTLFRF	9	Unmodified	_SIKTTLFRF_					0	0	0			REV__nc|ENSG00000163749|Q5M9N0-3|CCDC158	REV__nc|ENSG00000163749|Q5M9N0-3|CCDC158	MULTI-MSMS	A375_MHC_IP_R2	2	371.9537658691406	3	371.553603	1111.63898	0.43903	0.00016312	-0.32462	-0.00012062	0.11441	4.2509E-05	371.5534347344873	76.628	0.50892	77.368	77.095	77.604	0.74052					21	9	3	0	0	0	0.46465	1	29104	29104		15.739	1.5205	1	3401600	+		48443	27320	35212	35498	47346	47346					0.08762595265375239
SIKTTLFRF	9	Unmodified	_SIKTTLFRF_					0	0	0			REV__nc|ENSG00000163749|Q5M9N0-3|CCDC158	REV__nc|ENSG00000163749|Q5M9N0-3|CCDC158	MULTI-SECPEP	A375_MHC_IP_R2	2	557.20458984375	2	556.826766	1111.63898	-0.73913	-0.00041157	-4.3762	-0.0024368	-5.1153	-0.0028484	556.8248815043381	44.416	0.40549	45.185	44.883	45.289	0.7691					13	7	2	0	0	0	0.75466	1	16465	16465		1.8442	0	1	1151000	+		48444	27320	35212	35498	47347	47347					0.08762595265375239
SIKTTLFRF	9	Unmodified	_SIKTTLFRF_					0	0	0			REV__nc|ENSG00000163749|Q5M9N0-3|CCDC158	REV__nc|ENSG00000163749|Q5M9N0-3|CCDC158	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	371.553603	1111.63898	0.36784	0.00013667	-0.31164	-0.00011579	0.056208	2.0884E-05	371.5534180488198	77.742	0.51029	77.742	77.436	77.946	0	0.18702	5.233E-06	NaN	15.739	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1885000	+		48445	27320	35212	35498							0.08762595265375239
SIKTTLFRF	9	Unmodified	_SIKTTLFRF_					0	0	0			REV__nc|ENSG00000163749|Q5M9N0-3|CCDC158	REV__nc|ENSG00000163749|Q5M9N0-3|CCDC158	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	371.553603	1111.63898	0.43903	0.00016312	-0.32462	-0.00012062	0.11441	4.2509E-05	371.5534347344873	76.628	0.50892	77.368	77.095	77.604	0.74052	-0.18702	-9.2451E-06	NaN	15.739	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3401600	+		48446	27320	35212	35498							0.08762595265375239
SILADRILL	9	Unmodified	_SILADRILL_					0	0	0		ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A;SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant;ENSG00000101310|ENST00000650089|SEC23B	ENSG00000100934|ENST00000307712|SEC23A;SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	507.7210998535156	2	507.321317	1012.62808	-0.34168	-0.00017334	-0.05362	-2.7203E-05	-0.3953	-0.00020054	507.3211835450197	102.43	0.50443	102.43	102.25	102.76	0					14	9	2	0	0	0	0.095851	1	37668	37668		51.415	14.909	1	2936700			48447	2280;2234	35213	35499	47348	47348					0.12227192891100458
SILADRILL	9	Unmodified	_SILADRILL_					0	0	0		ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A;SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant;ENSG00000101310|ENST00000650089|SEC23B	ENSG00000100934|ENST00000307712|SEC23A;SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	507.7203674316406	2	507.321317	1012.62808	-0.6538	-0.00033168	-0.20046	-0.0001017	-0.85425	-0.00043338	507.321107907075	101.49	0.66109	102.25	101.91	102.57	0.76428					20	12	2	0	0	0	0.084766	1	38488	38488		53.404	13.454	1	2119000			48448	2280;2234	35213	35499	47349	47349					0.12227192891100458
SILDIVTKV	9	Unmodified	_SILDIVTKV_					0	0	0		ENSG00000162944|ENST00000295049|RFTN2	ENSG00000162944|ENST00000295049|RFTN2	ENSG00000162944|ENST00000295049|RFTN2	MULTI-MSMS	A375_MHC_IP_R1	1	494.7074279785156	2	494.307875	986.601197	-0.020953	-1.0357E-05	0.099634	4.925E-05	0.078682	3.8893E-05	494.30786227267816	116.01	0.86456	116.01	115.68	116.55	0					36	16	3	0	0	0	0.001114	1	42516	42516		152.89	15.462	1	22911000			48449	6617	35214	35500	47350	47350					0.10736084279915303
SILDIVTKV	9	Unmodified	_SILDIVTKV_					0	0	0		ENSG00000162944|ENST00000295049|RFTN2	ENSG00000162944|ENST00000295049|RFTN2	ENSG00000162944|ENST00000295049|RFTN2	MULTI-MSMS	A375_MHC_IP_R2	2	494.7075500488281	2	494.307875	986.601197	-0.29818	-0.00014739	0.41775	0.0002065	0.11957	5.9104E-05	494.30799960094026	114.96	0.81448	115.65	115.37	116.19	0.68999					32	15	3	0	0	0	0.0064781	1	43340	43340		132.38	14.619	1	26549000			48450	6617	35214	35500	47351	47351					0.10736084279915303
SILDPHLYTP	10	Unmodified	_SILDPHLYTP_					0	0	0		OR13C5|p.H56Y|1|0.26|ENSG00000277556|chr9:104599248-104599248|G/A|missense_variant	OR13C5|p.H56Y|1|0.26|ENSG00000277556|chr9:104599248-104599248|G/A|missense_variant	OR13C5|p.H56Y|1|0.26|ENSG00000277556|chr9:104599248-104599248|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	579.7045288085938	2	578.305864	1154.59717	0.0048789	2.8215E-06	-1.2855	-0.00074343	-1.2807	-0.00074061	578.3056528998508	106.69	2.0921	106.69	105.45	107.54	0					83	40	4	0	0	0	0.69306	1	38935	38935		13.906	0	1	9737600			48451	15061	35215	35501	47352	47352					0.02605994786199517
SILDQVWNI	9	Unmodified	_SILDQVWNI_					0	0	0		ENSG00000145220|ENST00000343470|LYAR	ENSG00000145220|ENST00000343470|LYAR	ENSG00000145220|ENST00000343470|LYAR	MULTI-MSMS	A375_MHC_IP_R1	1	544.7516479492188	2	544.292756	1086.57096	-0.8073	-0.00043941	-0.22403	-0.00012194	-1.0313	-0.00056134	544.2925775975723	132.08	0.30003	132.08	131.93	132.23	0					7	5	2	0	0	0	0.2487	1	50907	50907		34.402	5.3201	1	3770400			48452	5543	35216	35502	47353	47353					0.031137256147076187
SILDQVWNI	9	Unmodified	_SILDQVWNI_					0	0	0		ENSG00000145220|ENST00000343470|LYAR	ENSG00000145220|ENST00000343470|LYAR	ENSG00000145220|ENST00000343470|LYAR	MULTI-SECPEP	A375_MHC_IP_R2	2	544.692626953125	2	544.292756	1086.57096	-0.77952	-0.00042429	0.33701	0.00018343	-0.44251	-0.00024086	544.2927138517766	131.9	0.1506	132.09	132	132.15	0.18953					6	2	3	0	0	0	0.36673	1	51909	51909		58.679	22.635	1	4145100			48453	5543	35216	35502	47354	47354					0.031137256147076187
SILDQVWNI	9	Unmodified	_SILDQVWNI_					0	0	0		ENSG00000145220|ENST00000343470|LYAR	ENSG00000145220|ENST00000343470|LYAR	ENSG00000145220|ENST00000343470|LYAR	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	544.292756	1086.57096	-0.8073	-0.00043941	-0.22403	-0.00012194	-1.0313	-0.00056134	544.2925775975723	132.08	0.30003	132.08	131.93	132.23	0	-0.0092536	-0.00012212	NaN	34.402	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3770400			48454	5543	35216	35502							0.031137256147076187
SILDVRNVF	9	Unmodified	_SILDVRNVF_					0	0	0		ENSG00000173611|ENST00000336505|SCAI;nc|ENSG00000173611|Q8N9R8-2|SCAI	ENSG00000173611|ENST00000336505|SCAI	ENSG00000173611|ENST00000336505|SCAI	MULTI-MSMS	A375_MHC_IP_R1	1	531.7078247070312	2	531.800749	1061.58694	-0.45691	-0.00024298	-0.33115	-0.0001761	-0.78805	-0.00041909	531.8007174596174	51.538	0.35493	51.538	51.373	51.728	0					11	6	2	0	0	0	0.28079	1	18308	18308		41.84	22.478	1	2910400			48455	7815	35217	35503	47355	47355					0.058614318515992636
SILDVRNVF	9	Unmodified	_SILDVRNVF_					0	0	0		ENSG00000173611|ENST00000336505|SCAI;nc|ENSG00000173611|Q8N9R8-2|SCAI	ENSG00000173611|ENST00000336505|SCAI	ENSG00000173611|ENST00000336505|SCAI	MULTI-SECPEP	A375_MHC_IP_R2	2	531.7081909179688	2	531.800749	1061.58694	-0.7825	-0.00041613	-0.33414	-0.0001777	-1.1166	-0.00059383	531.8006745992622	50.771	0.35406	51.525	51.311	51.665	0.75406					14	6	3	0	0	0	0.49205	1	19067	19067		34.402	16.255	1	2131400			48456	7815	35217	35503	47356	47356					0.058614318515992636
SILEDPPSI	9	Unmodified	_SILEDPPSI_					0	0	0		nc|ENSG00000064102|Q9NVM9-2|INTS13;ENSG00000064102|ENST00000261191|INTS13	nc|ENSG00000064102|Q9NVM9-2|INTS13	nc|ENSG00000064102|Q9NVM9-2|INTS13	MULTI-MSMS	A375_MHC_IP_R1	1	486.1583251953125	2	485.758215	969.501877	-0.23046	-0.00011195	0.27924	0.00013564	0.048784	2.3697E-05	485.758256576514	96.197	1.37	96.197	95.767	97.137	0					73	26	4	0	0	0	0.004328	3	35289	35289;35502;35508		136.33	7.968	1	15731000			48457	1346	35218	35504	47357;47358;47359	47357					0.015906415951349118
SILEDPPSI	9	Unmodified	_SILEDPPSI_					0	0	0		nc|ENSG00000064102|Q9NVM9-2|INTS13;ENSG00000064102|ENST00000261191|INTS13	nc|ENSG00000064102|Q9NVM9-2|INTS13	nc|ENSG00000064102|Q9NVM9-2|INTS13	MULTI-MSMS	A375_MHC_IP_R2	2	486.1581115722656	2	485.758215	969.501877	-0.45538	-0.0002212	0.30021	0.00014583	-0.15517	-7.5374E-05	485.75826053606664	95.612	1.6283	96.363	95.735	97.363	0.75045					95	31	5	0	0	0	0.004328	3	36180	36180;36359;36395		136.33	7.968	1	15357000			48458	1346	35218	35504	47360;47361;47362	47360					0.015906415951349118
SILEHQIQV	9	Unmodified	_SILEHQIQV_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-SECPEP	A375_MHC_IP_R1	1	534.19775390625	2	533.798206	1065.58186	-0.55241	-0.00029487	0.26543	0.00014169	-0.28698	-0.00015319	533.798283634628	62.735	0.76945	62.735	62.403	63.173	0					43	14	4	0	0	0	0.010976	1	22629	22629		163.04	66.925	1	29949000			48459	2532	35219	35505	47363	47363					0.05169127988983746
SILEHQIQV	9	Unmodified	_SILEHQIQV_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-SECPEP	A375_MHC_IP_R2	2	534.19775390625	2	533.798206	1065.58186	-1.0352	-0.0005526	-0.086697	-4.6279E-05	-1.1219	-0.00059888	533.7981336183886	61.856	0.91101	62.598	62.319	63.23	0.74263					43	17	4	0	0	0	0.010806	1	23409	23409		137.42	41.313	1	33486000			48460	2532	35219	35505	47364	47364					0.05169127988983746
SILELIKEI	9	Unmodified	_SILELIKEI_					0	0	0		tr|U7SWZ0|U7SWZ0_FUSNUMethionineimportATP-bindingproteinMetNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01221PE=4SV=1	tr|U7SWZ0|U7SWZ0_FUSNUMethionineimportATP-bindingproteinMetNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01221PE=4SV=1	tr|U7SWZ0|U7SWZ0_FUSNUMethionineimportATP-bindingproteinMetNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01221PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	529.7293701171875	2	529.328808	1056.64306	-0.29584	-0.0001566	0.66942	0.00035435	0.37358	0.00019775	529.32909084176	108.25	0.55813	108.25	108.05	108.61	0					21	10	3	0	0	0	0.46045	1	39710	39710		29.082	5.061	1	2329400			48461	29821	35220	35506	47365	47365					0.11700639968421456
SILERIAAE	9	Unmodified	_SILERIAAE_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B;ENST00000473234.1_1_14:96783570-96789065:-|nuORF	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MSMS	A375_MHC_IP_R2	2	501.22344970703125	2	501.284931	1000.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.259	1	54.01	53.51	54.51	0.75105								0	0	0	0.15069	1	20094	20094		20.454	0	1				48462	1419	35221	35507	47366	47366					0.05505439097657927
SILETVTAV	9	Unmodified	_SILETVTAV_					0	0	0		nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	MULTI-SECPEP	A375_MHC_IP_R1	1	467.16851806640625	2	466.768583	931.522613	-0.21291	-9.938E-05	-0.27035	-0.00012619	-0.48326	-0.00022557	466.76841607236196	102.13	2.3318	102.13	101.19	103.52	0					97	45	5	0	0	0	0.0090634	1	37457	37457		154.46	44.834	1	64263000			48463	2880	35222	35508	47367	47367					0.054112319748242044
SILETVTAV	9	Unmodified	_SILETVTAV_					0	0	0		nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	MULTI-SECPEP	A375_MHC_IP_R1	1	932.2052001953125	1	932.529889	931.522613	0.016757	1.5626E-05	-0.52003	-0.00048494	-0.50327	-0.00046932	932.529329381724	102.13	2.0804	102.13	101.75	103.83	0					104	40	5	0	0	0	0.011358	1	37430	37430		96.285	34.927	1	335460000			48464	2880	35222	35508	47368	47368					0.054112319748242044
SILETVTAV	9	Unmodified	_SILETVTAV_					0	0	0		nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	MULTI-MSMS	A375_MHC_IP_R2	2	932.54150390625	1	932.529889	931.522613	-0.1533	-0.00014296	-0.1639	-0.00015284	-0.3172	-0.0002958	932.5296560879918	101.27	1.9844	102.03	101.65	103.63	0.76428					111	38	5	0	0	0	0.011087	2	38367	38367;38554		180.01	46.308	1	341870000			48465	2880	35222	35508	47369;47370	47369					0.054112319748242044
SILETVTAV	9	Unmodified	_SILETVTAV_					0	0	0		nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	MULTI-SECPEP	A375_MHC_IP_R2	2	467.1687927246094	2	466.768583	931.522613	-0.5342	-0.00024935	0.14929	6.9685E-05	-0.38491	-0.00017966	466.76860234187205	101.27	2.0357	102.03	101.5	103.53	0.76428					98	39	5	0	0	0	0.0090634	1	38313	38313		154.46	44.834	1	140220000			48466	2880	35222	35508	47371	47371					0.054112319748242044
SILFGYPLSE	10	Unmodified	_SILFGYPLSE_					0	0	0		ENST00000540578.6_1_18:9182415-9235682:+|nuORF;nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENSG00000101745|ENST00000262126|ANKRD12	ENST00000540578.6_1_18:9182415-9235682:+|nuORF;nc|ENSG00000101745|Q6UB98-2|ANKRD12	nc|ENSG00000101745|Q6UB98-2|ANKRD12	MULTI-MSMS	A375_MHC_IP_R2	2	376.26617431640625	3	375.865735	1124.57538	0.2073	7.7918E-05	0.60404	0.00022704	0.81134	0.00030496	375.86596936009744	40.18	0.30455	40.955	40.828	41.133	0.77451					11	5	3	0	0	0	0.69306	1	14905	14905		8.4443	0	1	2182400			48467	2319;13271	35223	35509	47372	47372					0.018071900376071426
SILFGYPLSE	10	Unmodified	_SILFGYPLSE_					0	0	0		ENST00000540578.6_1_18:9182415-9235682:+|nuORF;nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENSG00000101745|ENST00000262126|ANKRD12	ENST00000540578.6_1_18:9182415-9235682:+|nuORF;nc|ENSG00000101745|Q6UB98-2|ANKRD12	nc|ENSG00000101745|Q6UB98-2|ANKRD12	MULTI-MATCH	A375_MHC_IP_R1	1		3	375.865735	1124.57538	0.11826	4.4449E-05	-0.3068	-0.00011532	-0.18855	-7.0868E-05	375.86583019655427	41.146	0.35364	41.146	40.963	41.317	0	0.095573	-0.00082561	NaN	8.4443	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1429500			48468	2319;13271	35223	35509							0.018071900376071426
SILFSTLSVY	10	Unmodified	_SILFSTLSVY_					0	0	0			REV__RGPD5-MALL|1|fusion	REV__RGPD5-MALL|1|fusion	MULTI-SECPEP	A375_MHC_IP_R2	2	565.7108154296875	2	565.310615	1128.60668	-0.29467	-0.00016658	0.13796	7.7991E-05	-0.15671	-8.8587E-05	565.3104266119991	110.26	0.66455	111	110.78	111.45	0.73692					17	12	2	0	0	0	0.78945	1	41654	41654		25.399	14.575	1	1329200	+		48469	19411	35224	35510	47373	47373					0.047517630717266
SILFSTLSVY	10	Unmodified	_SILFSTLSVY_					0	0	0			REV__RGPD5-MALL|1|fusion	REV__RGPD5-MALL|1|fusion	MULTI-MATCH	A375_MHC_IP_R1	1		2	565.310615	1128.60668	-0.2668	-0.00015083	0.17382	9.8264E-05	-0.09298	-5.2562E-05	565.3105790173851	111.22	0.61433	111.22	110.85	111.46	0	0.11092	1.5532E-05	NaN	32.305	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1377000	+		48470	19411	35224	35510							0.047517630717266
SILGAAAGII	10	Unmodified	_SILGAAAGII_					0	0	0		tr|U7SYI7|U7SYI7_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00894PE=3SV=1	tr|U7SYI7|U7SYI7_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00894PE=3SV=1	tr|U7SYI7|U7SYI7_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00894PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	442.9918518066406	2	443.273835	884.533118	-0.077537	-3.437E-05	0.21207	9.4004E-05	0.13453	5.9634E-05	443.2738293442974	74.337	0.55853	74.337	74.045	74.604	0					23	10	3	0	0	0	0.72086	1	27151	27151		24.021	3.606	1	7097300			48471	29839	35225	35511	47374	47374					0.08623259419891838
SILGIVCLVV	10	Unmodified	_SILGIVCLVV_					0	0	0		ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	MULTI-SECPEP	A375_MHC_IP_R1	1	508.21331787109375	2	508.314646	1014.61474	-0.62042	-0.00031537	0.51154	0.00026002	-0.10888	-5.5344E-05	508.31494278210346	130.08	0.30397	130.08	129.85	130.16	0					8	5	2	0	0	0	0.76414	1	50043	50043		26.884	26.884	1	23804000			48472	9469	35226	35512	47375	47375					0.10801618787490952
SILGQHFAE	9	Unmodified	_SILGQHFAE_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MSMS	A375_MHC_IP_R2	2	501.1782531738281	2	501.256174	1000.49779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.75	1	66.489	65.989	66.989	0.73811								0	0	0	0.15069	1	24929	24929		20.454	2.3186	1		+		48473	18428	35227	35513	47376	47376					-0.002434031079133092
SILGTDILL	9	Unmodified	_SILGTDILL_					0	0	0		ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	MULTI-MSMS	A375_MHC_IP_R1	1	946.0301513671875	1	944.566275	943.558998	-0.20876	-0.00019719	-0.80737	-0.00076261	-1.0161	-0.0009598	944.5652972900156	130.64	0.254	130.64	130.57	130.82	0					11	4	3	0	0	0	0.03063	1	50347	50347		74.423	10.186	1	55094000			48474	4563	35228	35514	47377	47377					0.08496108871520391
SILGTDILL	9	Unmodified	_SILGTDILL_					0	0	0		ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	MULTI-SECPEP	A375_MHC_IP_R2	2	473.18487548828125	2	472.786776	943.558998	-0.46121	-0.00021805	-3.0397	-0.0014371	-3.5009	-0.0016552	472.78551221639964	84.64	0.50541	85.376	85.069	85.574	0.73602					15	9	2	0	0	0	0.58271	1	32207	32207		20.454	4.6064	1	1508100			48475	4563	35228	35514	47378	47378					0.08496108871520391
SILHDVVEV	9	Unmodified	_SILHDVVEV_					0	0	0		ENST00000572148.1_1_17:4863453-4863890:-|nuORF;ENSG00000091640|ENST00000206020|SPAG7	ENST00000572148.1_1_17:4863453-4863890:-|nuORF	ENST00000572148.1_1_17:4863453-4863890:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	506.1790771484375	2	505.779482	1009.54441	-0.71908	-0.0003637	-1.2079	-0.00061094	-1.927	-0.00097464	505.7793366775358	77.118	0.86111	77.861	77.555	78.416	0.74293					26	16	2	0	0	0	0.39388	1	29253	29253		32.305	0	1	6886500			48476	1984	35229	35515	47379	47379					0.04002036723386482
SILHSYNKL	9	Unmodified	_SILHSYNKL_					0	0	0			REV__ZNF780A|p.E37K|1|0.11|ENSG00000197782|chr19:40083138-40083138|C/T|missense_variant	REV__ZNF780A|p.E37K|1|0.11|ENSG00000197782|chr19:40083138-40083138|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	359.26947021484375	3	358.869591	1073.58694	-0.023739	-8.5191E-06	-0.15976	-5.7335E-05	-0.1835	-6.5854E-05	358.8695772513288	40.075	0.45984	40.075	39.794	40.254	0					17	8	3	0	0	0	0.65527	1	13756	13756		8.4443	4.2548	1	3579400	+		48477	29054	35230	35516	47380	47380					0.0530943185160595
SILKALKDI	9	Unmodified	_SILKALKDI_					0	0	0			REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	501.2058410644531	2	500.823692	999.632832	-1.1796	-0.00059077	0.59504	0.00029801	-0.58457	-0.00029276	500.8240308073444	53.29	0.51036	54.041	53.739	54.249	0.75105					14	9	2	0	0	0	0.60917	1	20154	20154		13.906	0	1	2570700	+		48478	28336	35231	35517	47381	47381					0.13300077033841262
SILKIQPDVP	10	Unmodified	_SILKIQPDVP_					0	0	0			REV__ENSG00000147231|ENST00000372548|RADX	REV__ENSG00000147231|ENST00000372548|RADX	MULTI-SECPEP	A375_MHC_IP_R2	2	369.9729919433594	3	370.557013	1108.64921	0.55046	0.00020398	-0.36426	-0.00013498	0.1862	6.8997E-05	370.55684406724185	43.775	0.40296	44.544	44.329	44.732	0.76909					12	7	2	0	0	0	0.93733	1	16310	16310		8.4443	0	1	1591300	+		48479	19579	35232	35518	47382	47382					0.09923158199922
SILKRQKQLRR	11	Unmodified	_SILKRQKQLRR_					0	0	0		ENSG00000110925|ENST00000228515|CSRNP2	ENSG00000110925|ENST00000228515|CSRNP2	ENSG00000110925|ENST00000228515|CSRNP2	MSMS	A375_MHC_IP_R1	1	713.7525634765625	2	713.459876	1424.9052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.25	1	105.25	104.75	105.75	0								0	0	0	0.16334	1	38640	38640		1.3295	0	1				48480	2959	35233	35519	47383	47383					0.20974278827725357
SILKRVKPRVV	11	Unmodified	_SILKRVKPRVV_					0	0	0			REV__nc|ENSG00000198961|O43164-2|PJA2	REV__nc|ENSG00000198961|O43164-2|PJA2	MSMS	A375_MHC_IP_R2	2	647.9352416992188	2	647.937714	1293.86087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.064	1	69.799	69.299	70.299	0.73511								0	0	0	0.16334	1	26170	26170		1.3295	0	1		+		48481	22458	35234	35520	47384	47384					0.22569874681516922
SILKTMVGGV	10	Unmodified	_SILKTMVGGV_					0	0	0			REV__HSPA5|p.P438S|1|0.38|ENSG00000044574|chr9:125238231-125238231|G/A|missense_variant	REV__HSPA5|p.P438S|1|0.38|ENSG00000044574|chr9:125238231-125238231|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	503.19415283203125	2	502.794078	1003.5736	-0.3993	-0.00020077	-0.40509	-0.00020368	-0.80439	-0.00040444	502.7939784617532	57.949	0.40625	57.949	57.771	58.177	0					13	7	2	0	0	0	0.63381	1	20839	20839		19.362	1.2156	1	1830400	+		48482	26763	35235	35521	47385	47385					0.07195857748035905
SILKWKRW	8	Unmodified	_SILKWKRW_					0	0	0		ENST00000499522.6_1_8:104178449-104258641:-|nuORF	ENST00000499522.6_1_8:104178449-104258641:-|nuORF	ENST00000499522.6_1_8:104178449-104258641:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	372.9366760253906	3	372.894071	1115.66038	0.21523	8.0256E-05	-1.0671	-0.0003979	-0.85183	-0.00031764	372.8937107447802	27.586	0.75677	27.586	27.28	28.037	0					26	14	3	0	0	0	0.77583	1	8470	8470		10.074	0.52995	1	7332300			48483	12772	35236	35522	47386	47386					0.10718025084747751
SILLDGLRHI	10	Unmodified	_SILLDGLRHI_					0	0	0			REV__nc|ENSG00000116584|Q92974-3|ARHGEF2	REV__nc|ENSG00000116584|Q92974-3|ARHGEF2	MSMS	A375_MHC_IP_R2	2	379.6325988769531	3	379.564391	1135.67134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.642	1	28.32	27.82	28.82	0.67857								0	0	0	0.15382	1	9472	9472		8.4443	2.6609	1		+		48484	17959	35237	35523	47387	47387					0.10893382668359664
SILNGNYFI	9	Unmodified	_SILNGNYFI_					0	0	0			REV__tr|U7SRP2|U7SRP2_FUSNUGlucokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01608PE=4SV=1	REV__tr|U7SRP2|U7SRP2_FUSNUGlucokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01608PE=4SV=1	MSMS	A375_MHC_IP_R1	1	520.6924438476562	2	520.7742	1039.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.149	1	59.149	58.649	59.649	0								0	0	0	0.15486	1	21269	21269		12.532	1.7076	1		+		48485	28406	35238	35524	47388	47388					0.01566054068939593
SILNKIKQF	9	Unmodified	_SILNKIKQF_					0	0	0			REV__SH2D1A|p.R78Q|1|0.12|ENSG00000183918|chrX:124370207-124370207|G/A|missense_variant	REV__SH2D1A|p.R78Q|1|0.12|ENSG00000183918|chrX:124370207-124370207|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	545.7005615234375	2	545.834591	1089.65463	-0.52982	-0.00028919	0.21816	0.00011908	-0.31166	-0.00017011	545.8345840325362	59.322	1.5759	59.322	58.938	60.514	0					44	30	2	0	0	0	0.27742	1	21321	21321		36.506	3.0613	1	1238000	+		48486	27956	35239	35525	47389	47389					0.11338881782421595
SILNLTTGR	9	Unmodified	_SILNLTTGR_					0	0	0			REV__tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1	REV__tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	487.1043395996094	2	487.785099	973.555644	-0.47507	-0.00023173	0.82062	0.00040029	0.34555	0.00016855	487.78667775216456	68.638	1.6221	69.373	68.816	70.438	0.73511					40	31	2	0	0	0	0.38578	1	26393	26393		21.537	3.3906	1	2475600	+		48487	28371	35240	35526	47390	47390					0.06780858817501212
SILNSAMQQA	10	Unmodified	_SILNSAMQQA_					0	0	0		nc|ENSG00000153820|Q2M3C7-2|SPHKAP;ENSG00000153820|ENST00000392056|SPHKAP	nc|ENSG00000153820|Q2M3C7-2|SPHKAP	nc|ENSG00000153820|Q2M3C7-2|SPHKAP	MULTI-MSMS	A375_MHC_IP_R2	2	532.7035522460938	2	531.766049	1061.51754	-0.86692	-0.000461	-0.31151	-0.00016565	-1.1784	-0.00062665	531.7658978978325	34.703	0.65879	35.466	35.119	35.778	0.76338					29	12	3	0	0	0	0.70179	1	12436	12436		11.495	1.4208	1	12146000			48488	6042	35241	35527	47391	47391					-0.010753951594551836
SILNTINEV	9	Unmodified	_SILNTINEV_					0	0	0		ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1	ENSG00000198561|ENST00000399050|CTNND1	ENSG00000198561|ENST00000399050|CTNND1	MULTI-MSMS	A375_MHC_IP_R2	2	502.1767883300781	2	501.776939	1001.53933	-0.7732	-0.00038797	-0.19493	-9.7814E-05	-0.96813	-0.00048579	501.7770017278853	96.85	0.45409	97.606	97.419	97.873	0.75586					13	8	2	0	0	0	0.0090297	1	36802	36802		99.755	17.865	1	2135100			48489	9283	35242	35528	47392	47392					0.03861732860775646
SILNTINEV	9	Unmodified	_SILNTINEV_					0	0	0		ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1	ENSG00000198561|ENST00000399050|CTNND1	ENSG00000198561|ENST00000399050|CTNND1	MULTI-MATCH	A375_MHC_IP_R1	1		2	501.776939	1001.53933	-0.30892	-0.00015501	0.69816	0.00035032	0.38924	0.00019531	501.7772606544311	97.797	0.71103	97.797	97.44	98.151	0	0.095744	0.00045984	NaN	99.755	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1122600			48490	9283	35242	35528							0.03861732860775646
SILRERFDR	9	Unmodified	_SILRERFDR_					0	0	0		ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000197217|ENST00000358689|ENTPD4;ENST00000522913.1_1_8:23292193-23294641:-|nuORF	ENST00000523958.5_1_8:23291828-23307413:-|nuORF	ENST00000523958.5_1_8:23291828-23307413:-|nuORF	MSMS	A375_MHC_IP_R1	1	596.3470458984375	2	596.333279	1190.652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.21	1	101.21	100.71	101.71	0								0	0	0	0.15486	1	37199	37199		7.2892	0.56607	1				48491	9132	35243	35529	47393	47393					0.06430426377460208
SILRHVAEV	9	Unmodified	_SILRHVAEV_					0	0	0		EIF2S1|p.L163Ffs*5|1|0.37|ENSG00000134001|chr14:67380672-67380679|TTGGATAG/-|frameshift_variant;ENSG00000134001|ENST00000256383|EIF2S1	EIF2S1|p.L163Ffs*5|1|0.37|ENSG00000134001|chr14:67380672-67380679|TTGGATAG/-|frameshift_variant	EIF2S1|p.L163Ffs*5|1|0.37|ENSG00000134001|chr14:67380672-67380679|TTGGATAG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	512.70068359375	2	512.300916	1022.58728	-0.82924	-0.00042482	-0.17483	-8.9567E-05	-1.0041	-0.00051439	512.3009772608168	39.419	0.66217	40.194	39.76	40.422	0.77451					18	12	3	0	0	0	0.69179	1	14588	14588		21.59	12.207	1	4346200			48492	831	35244	35530	47394	47394					0.07688851571469968
SILSEVQQA	9	Unmodified	_SILSEVQQA_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226555150-226558263:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	A375_MHC_IP_R1	1	488.1610412597656	2	487.761289	973.508025	-0.31208	-0.00015222	-0.69368	-0.00033835	-1.0058	-0.00049057	487.76088098622796	77.187	0.76009	77.187	76.827	77.588	0					38	14	3	0	0	0	0.010998	1	28103	28103		126.57	74.298	1	10943000			48493	5434	35245	35531	47395	47395					0.020211598266769215
SILSEVQQA	9	Unmodified	_SILSEVQQA_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226555150-226558263:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	A375_MHC_IP_R2	2	488.1607971191406	2	487.761289	973.508025	-0.57254	-0.00027926	-0.46847	-0.0002285	-1.041	-0.00050776	487.76100823661955	76.432	0.76154	77.173	76.843	77.604	0.74052					38	14	4	0	0	0	0.059859	1	28965	28965		71.922	39.617	1	15389000			48494	5434	35245	35531	47396	47396					0.020211598266769215
SILSKHEKI	9	Unmodified	_SILSKHEKI_					0	0	0		ENSG00000256229|ENST00000335117|ZNF486	ENSG00000256229|ENST00000335117|ZNF486	ENSG00000256229|ENST00000335117|ZNF486	MULTI-SECPEP	A375_MHC_IP_R2	2	528.1161499023438	2	527.816399	1053.61824	-1	-0.00052783	-0.075404	-3.9799E-05	-1.0754	-0.00056763	527.8162833234461	37.279	0.30597	38.049	37.917	38.223	0.7709					13	5	4	0	0	0	0.63327	1	13586	13586		18.146	0	1	5005800			48495	9895	35246	35532	47397	47397					0.09358004885712035
SILSNIHEV	9	Unmodified	_SILSNIHEV_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	A375_MHC_IP_R1	1	506.6767883300781	2	506.277106	1010.53966	-0.62116	-0.00031448	0.38478	0.0001948	-0.23638	-0.00011967	506.27733192891435	66.807	2.0841	66.807	65.871	67.955	0					78	40	5	0	0	0	0.027818	1	24147	24147		76.825	14.252	1	68242000			48496	6906	35247	35533	47398	47398					0.034811525806162535
SILSNIHEV	9	Unmodified	_SILSNIHEV_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	A375_MHC_IP_R2	2	506.67681884765625	2	506.277106	1010.53966	-0.93129	-0.00047149	0.12074	6.1129E-05	-0.81055	-0.00041036	506.2771831464859	65.866	2.1866	66.604	65.766	67.953	0.73812					85	42	5	0	0	0	0.027818	3	24914	24886;24914;25125		76.825	20.648	1	85310000			48497	6906	35247	35533	47399;47400;47401	47400					0.034811525806162535
SILSTKITI	9	Unmodified	_SILSTKITI_					0	0	0			REV__ENST00000492808.5_1_1:26644456-26645257:+|nuORF	REV__ENST00000492808.5_1_1:26644456-26645257:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	487.6997985839844	2	488.307875	974.601197	-0.57336	-0.00027998	-0.087229	-4.2594E-05	-0.66059	-0.00032257	488.3074874626369	76.804	0.45412	77.546	77.302	77.756	0.74136					13	8	2	0	0	0	0.50702	1	29146	29146		25.399	5.9603	1	864880	+		48498	25415	35248	35534	47402	47402					0.1128808427988588
SILSWSLSHL	10	Unmodified	_SILSWSLSHL_					0	0	0			REV__ENST00000336095.10_1_20:3914180-3914489:-|nuORF	REV__ENST00000336095.10_1_20:3914180-3914489:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	381.9447937011719	3	381.544996	1141.61316	-0.12347	-4.7111E-05	1.9158	0.00073096	1.7923	0.00068385	381.54622301040854	40.312	0.50642	41.086	40.879	41.386	0.77451					22	9	4	0	0	0	0.6502	1	14950	14950		19.626	5.4552	1	2549100	+		48499	23678	35249	35535	47403	47403					0.048017010230978485
SILTEHKR	8	Unmodified	_SILTEHKR_					0	0	0		nc|ENSG00000197124|O95780-2|ZNF682;nc|ENSG00000197124|O95780-3|ZNF682;ENSG00000197124|ENST00000397165|ZNF682;ENSG00000181450|ENST00000343776|ZNF678	nc|ENSG00000197124|O95780-2|ZNF682	nc|ENSG00000197124|O95780-2|ZNF682	MULTI-MSMS	A375_MHC_IP_R2	2	492.6845397949219	2	492.285266	982.555979	-0.56819	-0.00027971	0.41098	0.00020232	-0.15721	-7.7394E-05	492.2853600506721	127.73	1.2689	127.99	127.82	129.09	0.26593					28	24	2	0	0	0	0.77797	1	50161	50161		2.3027	0	1	8346800			48500	9119	35250	35536	47404	47404					0.06400278537375925
SILTKKETL	9	Unmodified	_SILTKKETL_					0	0	0			REV__ENSG00000172901|ENST00000357872|LVRN	REV__ENSG00000172901|ENST00000357872|LVRN	MULTI-SECPEP	A375_MHC_IP_R2	2	517.5588989257812	2	516.818607	1031.62266	-0.68305	-0.00035301	-0.32211	-0.00016647	-1.0052	-0.00051949	516.8183664193699	79.678	0.55981	80.423	80.149	80.708	0.74474					20	10	3	0	0	0	0.39388	1	30195	30195		19.257	0	1	8357300	+		48501	21179	35251	35537	47405	47405					0.108114693086236
SILTVLRRLL	10	Unmodified	_SILTVLRRLL_					0	0	0			REV__ENSG00000185825|ENST00000345046|BCAP31	REV__ENSG00000185825|ENST00000345046|BCAP31	MULTI-SECPEP	A375_MHC_IP_R2	2	592.2039794921875	2	592.39789	1182.78123	-0.47979	-0.00028423	2.6177	0.0015507	2.1379	0.0012665	592.9006599513792	91.92	0.1489	92.659	92.585	92.734	0.73902					4	2	2	0	0	0	0.94516	1	34959	34959		1.4819	0	1	880640	+		48502	21922	35252	35538	47406	47406					0.19714808007552165
SILVIKKKHKL	11	Unmodified	_SILVIKKKHKL_					0	0	0			REV__tr|U7SFX4|U7SFX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02268PE=4SV=1	REV__tr|U7SFX4|U7SFX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02268PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	653.8514404296875	2	653.95029	1305.88603	-0.60509	-0.0003957	-0.55184	-0.00036087	-1.1569	-0.00075657	654.4498403904282	86.502	0.15184	86.502	86.426	86.578	0					4	2	2	0	0	0	1.0008	1	31747	31747		0	0	1	1313000	+		48503	28174	35253	35539	47407	47407					0.24531929484101056
SILWGAVPK	9	Unmodified	_SILWGAVPK_					0	0	0			REV__ENST00000375749.7_1_20:30823945-30824224:+|nuORF	REV__ENST00000375749.7_1_20:30823945-30824224:+|nuORF	MSMS	A375_MHC_IP_R1	1	485.6898193359375	2	485.789653	969.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.758	1	42.758	42.258	43.258	0								0	0	0	0.15486	1	14832	14832		10.824	1.4765	1		+		48504	24134	35254	35540	47408	47408					0.07875252173846548
SILWLHLLLK	10	Unmodified	_SILWLHLLLK_					0	0	0		ADCK2|p.T128I|1|0.06|ENSG00000133597|chr7:140673713-140673713|C/T|missense_variant	ADCK2|p.T128I|1|0.06|ENSG00000133597|chr7:140673713-140673713|C/T|missense_variant	ADCK2|p.T128I|1|0.06|ENSG00000133597|chr7:140673713-140673713|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	618.302490234375	2	618.397359	1234.78016	-0.47324	-0.00029265	3.2271	0.0019956	2.7539	0.001703	618.4012317553553	112.27	0.50992	112.99	112.61	113.12	0.72458					14	9	2	0	0	0	0.94516	1	42312	42312		3.5965	3.5965	1	3380800			48505	58	35255	35541	47409	47409					0.17216593638659106
SILYLEGAEL	10	Unmodified	_SILYLEGAEL_					0	0	0		nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	MULTI-MSMS	A375_MHC_IP_R1	1	554.208251953125	2	554.300247	1106.58594	-0.62377	-0.00034575	1.1663	0.00064646	0.54249	0.0003007	554.3003227394022	89.79	0.86053	89.79	89.526	90.387	0					37	16	4	0	0	0	0.21466	1	32910	32910		47.749	17.112	1	4559500			48506	8098	35256	35542	47410	47410					0.036911726920379806
SILYYYFS	8	Unmodified	_SILYYYFS_					0	0	0		ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	MULTI-SECPEP	A375_MHC_IP_R1	1	528.6387939453125	2	528.257851	1054.50115	-0.60606	-0.00032016	2.1732	0.001148	1.5671	0.00082783	528.2586762182154	83.629	0.35326	83.629	83.533	83.887	0					11	6	2	0	0	0	0.8824	1	30573	30573		23.148	9.6405	1	832730			48507	5636	35257	35543	47411	47411					-0.023921530539155356
SIMDYVVFV	9	Unmodified	_SIMDYVVFV_					0	0	0		ENST00000488743.6_1_2:27425876-27434347:-|nuORF;ENSG00000138074|ENST00000310574|SLC5A6	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1723022460938	2	536.772811	1071.53107	-0.96951	-0.00052041	-0.035197	-1.8893E-05	-1.0047	-0.0005393	536.7727819423941	134.04	0.25586	134.04	133.86	134.12	0					7	4	2	0	0	0	0.41434	1	51706	51706		53.576	30.427	1	3038500			48508	12622	35258	35544	47412	47412					-0.0018353738021232857
SIMDYVVFV	9	Unmodified	_SIMDYVVFV_					0	0	0		ENST00000488743.6_1_2:27425876-27434347:-|nuORF;ENSG00000138074|ENST00000310574|SLC5A6	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	537.060302734375	2	536.772811	1071.53107	-0.7879	-0.00042293	-0.16004	-8.5906E-05	-0.94795	-0.00050883	536.7725167854608	133.92	0.25418	134.08	133.91	134.16	0.16487					7	4	2	0	0	0	0.27742	1	52672	52672		48.346	12.302	1	2297200			48509	12622	35258	35544	47413	47413					-0.0018353738021232857
SIMEGLGSPV	10	Unmodified	_SIMEGLGSPV_					0	0	0			REV__nc|ENSG00000089006|Q9Y5X3-2|SNX5	REV__nc|ENSG00000089006|Q9Y5X3-2|SNX5	MSMS	A375_MHC_IP_R1	1	495.19488525390625	2	495.252243	988.489932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.669	1	92.669	92.169	93.169	0								0	0	0	0.14601	1	34059	34059		25.399	4.5281	1		+		48510	27129	35259	35545	47414	47414					-0.004772984196847574
SIMEGLGSPV	10	Unmodified	_SIMEGLGSPV_					0	0	0			REV__nc|ENSG00000089006|Q9Y5X3-2|SNX5	REV__nc|ENSG00000089006|Q9Y5X3-2|SNX5	MSMS	A375_MHC_IP_R1	1	495.1686706542969	2	495.252243	988.489932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.907	1	92.907	92.407	93.407	0								0	0	0	0.13504	1	34148	34148		32.305	3.8186	1		+		48511	27129	35259	35545	47415	47415					-0.004772984196847574
SIMFSFNMFD	10	Unmodified	_SIMFSFNMFD_					0	0	0		ENST00000459854.5_1_22:19459324-19466647:-|nuORF;ENST00000489406.1_1_22:19455337-19466647:-|nuORF	ENST00000459854.5_1_22:19459324-19466647:-|nuORF	ENST00000459854.5_1_22:19459324-19466647:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	620.1644897460938	2	619.76466	1237.51477	-1.0009	-0.00062032	-0.41424	-0.00025673	-1.4151	-0.00087705	619.7644331563178	51.888	0.40836	52.64	52.423	52.831	0.75225					10	7	2	0	0	0	0.70651	1	19557	19557		9.3831	0.63772	1	2018700			48512	12157	35260	35546	47416	47416					-0.09448986608617815
SIMKEFRSGAR	11	Unmodified	_SIMKEFRSGAR_					0	0	0		ENST00000575978.1_1_17:78111144-78112096:-|nuORF	ENST00000575978.1_1_17:78111144-78112096:-|nuORF	ENST00000575978.1_1_17:78111144-78112096:-|nuORF	MSMS	A375_MHC_IP_R1	1	641.403564453125	2	641.340246	1280.66594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.491	1	87.491	86.991	87.991	0								0	0	0	0.16213	1	32102	32102		7.609	0.88579	1				48513	13638	35261	35547	47417	47417					0.036833358142530415
SIMMVTPALI	10	Unmodified	_SIMMVTPALI_					0	0	0			REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2	REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MULTI-SECPEP	A375_MHC_IP_R1	1	358.9779357910156	3	359.201185	1074.58172	0.048294	1.7347E-05	-0.53467	-0.00019205	-0.48638	-0.00017471	359.20109390035407	40.895	0.25075	40.895	40.762	41.013	0					9	4	3	0	0	0	0.92351	1	14049	14049		6.1918	0	1	934630	+		48514	17302	35262	35548	47418	47418					0.04741668673136701
SIMVAEGMLY	10	Unmodified	_SIMVAEGMLY_					0	0	0		ENSG00000129951|ENST00000520876|PLPPR3;nc|ENSG00000129951|Q6T4P5-2|PLPPR3;nc|ENSG00000129951|Q6T4P5-3|PLPPR3	ENSG00000129951|ENST00000520876|PLPPR3	ENSG00000129951|ENST00000520876|PLPPR3	MULTI-SECPEP	A375_MHC_IP_R2	2	557.1499633789062	2	557.269578	1112.5246	-0.70876	-0.00039497	-0.54019	-0.00030103	-1.2489	-0.000696	557.2695863500779	78.519	0.91603	79.263	78.828	79.744	0.74473					43	17	4	0	0	0	0.69172	1	29840	29840		32.305	9.1571	1	17707000			48515	4216	35263	35549	47419	47419					-0.027157986032307235
SINEEIQTV	9	Unmodified	_SINEEIQTV_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-MSMS	A375_MHC_IP_R1	1	516.6793823242188	2	516.764029	1031.5135	-0.55146	-0.00028497	3.2645	0.001687	2.713	0.001402	516.7638162845224	60.705	0.55963	60.705	60.312	60.871	0					21	10	3	0	0	0	0.22013	1	21839	21839		36.506	5.2379	1	1833300			48516	2300	35264	35550	47420	47420					-0.0009916138151311316
SINGDKKVLSA	11	Unmodified	_SINGDKKVLSA_					0	0	0		tr|U7T4W2|U7T4W2_FUSNUbeta-lactamaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00215PE=3SV=1	tr|U7T4W2|U7T4W2_FUSNUbeta-lactamaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00215PE=3SV=1	tr|U7T4W2|U7T4W2_FUSNUbeta-lactamaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00215PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	566.72216796875	2	566.322045	1130.62954	-0.48025	-0.00027198	0.095326	5.3985E-05	-0.38492	-0.00021799	566.3219941069974	129.12	1.1187	129.12	128.79	129.9	0					37	21	2	0	0	0	0.73135	2	49603	49603;49956		7.609	0.50723	1	66831000			48517	30004	35265	35551	47421;47422	47421					0.06944782189179932
SINGDKKVLSA	11	Unmodified	_SINGDKKVLSA_					0	0	0		tr|U7T4W2|U7T4W2_FUSNUbeta-lactamaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00215PE=3SV=1	tr|U7T4W2|U7T4W2_FUSNUbeta-lactamaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00215PE=3SV=1	tr|U7T4W2|U7T4W2_FUSNUbeta-lactamaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00215PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	566.721435546875	2	566.322045	1130.62954	-0.46815	-0.00026512	-0.33914	-0.00019206	-0.80729	-0.00045719	566.3217442422362	128.79	1.2124	129.03	128.81	130.02	0.23946					38	23	2	0	0	0	0.73135	1	50598	50598		7.609	1.8771	1	53305000			48518	30004	35265	35551	47423	47423					0.06944782189179932
SINISGNGF	9	Unmodified	_SINISGNGF_					0	0	0		nc|ENSG00000185591|P08047-3|SP1;nc|ENSG00000185591|P08047-2|SP1;ENSG00000185591|ENST00000327443|SP1	nc|ENSG00000185591|P08047-3|SP1	nc|ENSG00000185591|P08047-3|SP1	MULTI-SECPEP	A375_MHC_IP_R2	2	454.6369323730469	2	454.727249	907.439946	-0.41584	-0.0001891	-0.013881	-6.3119E-06	-0.42972	-0.00019541	454.72719795836855	35.616	0.40458	36.379	36.183	36.587	0.76338					11	7	2	0	0	0	0.53748	1	12913	12913		18.146	8.0724	1	1684600			48519	8677	35266	35552	47424	47424					-0.017476650333264843
SINKLIFNF	9	Unmodified	_SINKLIFNF_					0	0	0			REV__tr|U7STJ8|U7STJ8_FUSNUAdenosylcobinamide-GDPribazoletransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobSPE=3SV=1	REV__tr|U7STJ8|U7STJ8_FUSNUAdenosylcobinamide-GDPribazoletransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobSPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	365.9575500488281	3	365.878087	1094.61243	-0.11481	-4.2006E-05	0.59151	0.00021642	0.4767	0.00017441	365.8781426723231	50.225	0.507	50.979	50.702	51.209	0.75406					19	9	3	0	0	0	0.71541	1	18806	18806		7.609	3.4194	1	1497700	+		48520	28492	35267	35553	47425	47425					0.0689090637404206
SINLFTAVLE	10	Unmodified	_SINLFTAVLE_					0	0	0			REV__nc|ENSG00000226807|Q6ZUA9|MROH5	REV__nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-SECPEP	A375_MHC_IP_R1	1	553.1890869140625	2	553.808239	1105.60193	-0.53897	-0.00029848	-0.0061263	-3.3928E-06	-0.54509	-0.00030188	553.8082815086805	73.166	0.45647	73.166	73.031	73.488	0					12	8	2	0	0	0	0.78945	1	26599	26599		13.906	3.0821	1	1154400	+		48521	27507	35268	35554	47426	47426					0.05334878928965736
SINLQFLDR	9	Unmodified	_SINLQFLDR_					0	0	0		ENSG00000111012|ENST00000228606|CYP27B1	ENSG00000111012|ENST00000228606|CYP27B1	ENSG00000111012|ENST00000228606|CYP27B1	MULTI-SECPEP	A375_MHC_IP_R2	2	369.2851257324219	3	369.204862	1104.59276	0.32862	0.00012133	-0.54957	-0.0002029	-0.22095	-8.1576E-05	369.204527543878	42.506	0.50978	43.279	42.86	43.369	0.7724					10	9	2	0	0	0	0.74412	1	15711	15711		3.8763	0	1	1051500			48522	2962	35269	35555	47427	47427					0.04464530363270569
SINNNDHSI	9	Unmodified	_SINNNDHSI_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MSMS	A375_MHC_IP_R2	2	507.13482666015625	2	507.23597	1012.45739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.44	1	68.177	67.677	68.677	0.73631								0	0	0	0.15486	1	25550	25550		11.64	0.81637	1		+		48523	19783	35270	35556	47428	47428					-0.04834369498325941
SINPVSLTF	9	Unmodified	_SINPVSLTF_					0	0	0			REV__LMTK2|p.A989Sfs*3|1|0.31|ENSG00000164715|chr7:98193423-98193424|-/T|frameshift_variant	REV__LMTK2|p.A989Sfs*3|1|0.31|ENSG00000164715|chr7:98193423-98193424|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	488.7789306640625	2	489.26875	976.522947	-0.45647	-0.00022334	-0.33489	-0.00016385	-0.79136	-0.00038719	489.2685194297777	87.331	0.45503	88.064	87.712	88.167	0.733					13	8	2	0	0	0	0.60917	1	33158	33158		9.3831	0	1	1542300	+		48524	20511	35271	35557	47429	47429					0.03374651694662134
SINQFFEVP	9	Unmodified	_SINQFFEVP_					0	0	0		ENSG00000006695|ENST00000261643|COX10	ENSG00000006695|ENST00000261643|COX10	ENSG00000006695|ENST00000261643|COX10	MULTI-SECPEP	A375_MHC_IP_R1	1	540.799560546875	2	540.771657	1079.52876	-0.55389	-0.00029953	-0.64411	-0.00034832	-1.198	-0.00064785	540.7713716292136	79.332	0.66676	79.332	79.061	79.728	0					18	12	2	0	0	0	0.60917	1	29050	29050		19.257	5.3509	1	845290			48525	924	35272	35558	47430	47430					-0.007822497936558648
SINRNDCDKY	10	Unmodified	_SINRNDCDKY_					0	0	0		ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	MSMS	A375_MHC_IP_R1	1	614.005126953125	2	614.274769	1226.53499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.37	1	105.37	104.87	105.87	0								0	0	0	0.15158	1	38685	38685		14.838	4.0143	1				48526	4196	35273	35559	47431	47431					-0.06922099624466682
SINSATDPW	9	Unmodified	_SINSATDPW_					0	0	0		nc|ENSG00000163638|Q9P2N4-4|ADAMTS9;ENSG00000163638|ENST00000498707|ADAMTS9;nc|ENSG00000163638|Q9P2N4-1|ADAMTS9;nc|ENSG00000163638|Q9P2N4-2|ADAMTS9;ENST00000475557.5_1_3:64600969-64673333:-|nuORF	nc|ENSG00000163638|Q9P2N4-4|ADAMTS9	nc|ENSG00000163638|Q9P2N4-4|ADAMTS9	MULTI-MSMS	A375_MHC_IP_R2	2	495.68707275390625	2	495.729989	989.445425	-0.49145	-0.00024363	-0.24015	-0.00011905	-0.73159	-0.00036267	495.7298151219333	64.867	0.50715	65.605	65.41	65.917	0.73811					14	9	2	0	0	0	0.64808	1	24546	24546		11.64	0.81637	1	1185300			48527	6701	35274	35560	47432	47432					-0.04971986241537252
SINSATDPW	9	Unmodified	_SINSATDPW_					0	0	0		nc|ENSG00000163638|Q9P2N4-4|ADAMTS9;ENSG00000163638|ENST00000498707|ADAMTS9;nc|ENSG00000163638|Q9P2N4-1|ADAMTS9;nc|ENSG00000163638|Q9P2N4-2|ADAMTS9;ENST00000475557.5_1_3:64600969-64673333:-|nuORF	nc|ENSG00000163638|Q9P2N4-4|ADAMTS9	nc|ENSG00000163638|Q9P2N4-4|ADAMTS9	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	495.729989	989.445425	-0.49145	-0.00024363	-0.24015	-0.00011905	-0.73159	-0.00036267	495.7298151219333	64.867	0.50715	65.605	65.41	65.917	0.73811	0.0069388	-1.4876E-05	NaN	11.64	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1185300			48528	6701	35274	35560							-0.04971986241537252
SINSENGYLY	10	Unmodified	_SINSENGYLY_					0	0	0		nc|ENSG00000138650|Q9P2E7-2|PCDH10;ENSG00000138650|ENST00000264360|PCDH10	nc|ENSG00000138650|Q9P2E7-2|PCDH10	nc|ENSG00000138650|Q9P2E7-2|PCDH10	MULTI-SECPEP	A375_MHC_IP_R1	1	580.66650390625	2	580.266936	1158.51932	-0.14225	-8.2545E-05	0.19104	0.00011085	0.048781	2.8306E-05	580.2667888676484	97.857	0.86254	97.857	97.288	98.151	0					37	16	3	0	0	0	0.88918	1	35903	35903		13.042	0	1	6807500			48529	5017	35275	35561	47433	47433					-0.053600628698632136
SINSENGYLY	10	Unmodified	_SINSENGYLY_					0	0	0		nc|ENSG00000138650|Q9P2E7-2|PCDH10;ENSG00000138650|ENST00000264360|PCDH10	nc|ENSG00000138650|Q9P2E7-2|PCDH10	nc|ENSG00000138650|Q9P2E7-2|PCDH10	MULTI-SECPEP	A375_MHC_IP_R2	2	580.6661987304688	2	580.266936	1158.51932	-0.48713	-0.00028267	-0.26813	-0.00015559	-0.75526	-0.00043825	580.2666547306001	97.099	0.86239	97.855	97.519	98.381	0.75586					33	16	3	0	0	0	0.88918	1	36803	36803		8.7454	0	1	8010200			48530	5017	35275	35561	47434	47434					-0.053600628698632136
SIPAPQSIVV	10	Unmodified	_SIPAPQSIVV_					0	0	0			REV__nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1	REV__nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1	MULTI-SECPEP	A375_MHC_IP_R1	1	506.19732666015625	2	505.797675	1009.5808	-0.39779	-0.0002012	-1.0765	-0.00054448	-1.4743	-0.00074568	505.7975231001496	46.363	0.452	46.363	46.144	46.596	0					19	8	3	0	0	0	0.8528	1	16295	16295		21.537	2.28	1	3900300	+		48531	16226	35276	35562	47435	47435					0.07638913620110088
SIPAYKIRY	9	Unmodified	_SIPAYKIRY_					0	0	0			REV__nc|ENSG00000041982|P24821-4|TNC	REV__nc|ENSG00000041982|P24821-4|TNC	MULTI-MSMS	A375_MHC_IP_R1	1	370.9342041015625	3	370.88172	1109.62333	-0.059143	-2.1935E-05	-0.12902	-4.7851E-05	-0.18816	-6.9786E-05	370.8816723442908	41.399	0.61061	41.399	41.063	41.674	0					22	11	3	0	0	0	0.68705	1	14170	14170		8.1555	1.0538	1	7292800	+		48532	16345	35277	35563	47436	47436					0.0729030874831551
SIPDFQRKY	9	Unmodified	_SIPDFQRKY_					0	0	0		ENSG00000111667|ENST00000229268|USP5;ENST00000537267.5_1_12:6966716-6975238:+|nuORF;nc|ENSG00000111667|P45974-2|USP5	ENSG00000111667|ENST00000229268|USP5	ENSG00000111667|ENST00000229268|USP5	MULTI-SECPEP	A375_MHC_IP_R1	1	385.933837890625	3	385.204862	1152.59276	-0.071737	-2.7633E-05	0.696	0.0002681	0.62426	0.00024047	385.2050473064729	38.293	0.61259	38.293	38.016	38.628	0					15	11	2	0	0	0	0.76106	1	13020	13020		13.615	13.615	1	3088300			48533	3010	35278	35564	47437	47437					0.022565303632973155
SIPDLRFGR	9	Unmodified	_SIPDLRFGR_					0	0	0		ENST00000394945.5_1_5:136314178-136314286:-|nuORF	ENST00000394945.5_1_5:136314178-136314286:-|nuORF	ENST00000394945.5_1_5:136314178-136314286:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	353.5976867675781	3	354.201452	1059.58253	-0.37255	-0.00013196	-0.31915	-0.00011304	-0.6917	-0.000245	354.20125295560763	36.022	1.119	36.785	36.03	37.15	0.76338					26	21	2	0	0	0	0.74875	1	13203	13203		10.8	3.7624	1	2664900			48534	11461	35279	35565	47438	47438					0.055119674287197995
SIPEEPEQGK	10	Unmodified	_SIPEEPEQGK_					0	0	0		SPEG|p.E1181K|1|0.14|ENSG00000072195|chr2:219469205-219469205|G/A|missense_variant	SPEG|p.E1181K|1|0.14|ENSG00000072195|chr2:219469205-219469205|G/A|missense_variant	SPEG|p.E1181K|1|0.14|ENSG00000072195|chr2:219469205-219469205|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	556.6608276367188	2	557.274761	1112.53497	-0.47184	-0.00026295	1.13	0.00062972	0.65816	0.00036678	557.2752599572248	31.692	0.3045	31.692	31.465	31.769	0					8	5	2	0	0	0	0.70528	1	10093	10093		26.268	4.5215	1	1222300			48535	29232	35280	35566	47439	47439					-0.016797763528074938
SIPHTIFKILY	11	Unmodified	_SIPHTIFKILY_					0	0	0		MRGPRX1|p.S95F|1|0.24|ENSG00000170255|chr11:18934501-18934501|G/A|missense_variant	MRGPRX1|p.S95F|1|0.24|ENSG00000170255|chr11:18934501-18934501|G/A|missense_variant	MRGPRX1|p.S95F|1|0.24|ENSG00000170255|chr11:18934501-18934501|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	666.1207885742188	2	666.389731	1330.76491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.845	1	72.845	72.345	73.345	0								0	0	0	0.16249	1	26511	26511		5.7319	2.4505	1				48536	14400	35281	35567	47440	47440					0.11275682050813884
SIPLEWDYTGD	11	Unmodified	_SIPLEWDYTGD_					0	0	0		SYNE2|p.H6421Y|1|0.43|ENSG00000054654|chr14:64214398-64214398|C/T|missense_variant	SYNE2|p.H6421Y|1|0.43|ENSG00000054654|chr14:64214398-64214398|C/T|missense_variant	SYNE2|p.H6421Y|1|0.43|ENSG00000054654|chr14:64214398-64214398|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	432.6810302734375	3	432.531192	1294.57175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.396	1	77.396	76.896	77.896	0								0	0	0	0.16307	1	28234	28234		1.1098	0.41209	1				48537	29280	35282	35568	47441	47441					-0.06375524526924892
SIPRQESYLK	10	Unmodified	_SIPRQESYLK_					0	0	0			REV__tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1	REV__tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1	MSMS	A375_MHC_IP_R2	2	610.6846313476562	2	610.83532	1219.65609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.686	1	55.437	54.937	55.937	0.75075								0	0	0	0.15332	1	20641	20641		10.074	1.9184	1		+		48538	28236	35283	35569	47442	47442					0.05504471080507756
SIPSKFTDRR	10	Unmodified	_SIPSKFTDRR_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-SECPEP	A375_MHC_IP_R2	2	604.1990356445312	2	603.833111	1205.65167	-0.37073	-0.00022386	-3.2827	-0.0019822	-3.6534	-0.002206	604.33218514186	98.704	0.15308	99.463	99.352	99.505	0.75977					4	2	2	0	0	0	0.92227	1	37414	37414		8.7454	0	1	1068800			48539	2325	35284	35570	47443	47443					0.0570700665757613
SIPSTIGYHK	10	Unmodified	_SIPSTIGYHK_					0	0	0			REV__nc|ENSG00000115421|Q9BWT3-2|PAPOLG;REV__ENST00000554130.5_1_14:96968887-96993844:+|nuORF	REV__ENST00000554130.5_1_14:96968887-96993844:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	368.29296875	3	368.201229	1101.58186	0.11575	4.262E-05	-0.1775	-6.5356E-05	-0.061747	-2.2735E-05	368.2013072263495	24.422	0.45294	24.422	24.245	24.698	0					9	8	2	0	0	0	0.90513	1	7047	7047		4.7159	0	1	3489400	+		48540	17884;16923	35285	35571	47444	47444					0.035131279889810685
SIPSVPGSCKE	11	Unmodified	_SIPSVPGSCKE_					0	0	0		EPHB2|p.K656Vfs*90|1|0.27|ENSG00000133216|chr1:22906787-22906788|AA/-|frameshift_variant;ENSG00000133216|ENST00000374630|EPHB2;nc|ENSG00000133216|P29323-3|EPHB2;nc|ENSG00000133216|P29323|EPHB2	EPHB2|p.K656Vfs*90|1|0.27|ENSG00000133216|chr1:22906787-22906788|AA/-|frameshift_variant	EPHB2|p.K656Vfs*90|1|0.27|ENSG00000133216|chr1:22906787-22906788|AA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	552.1846923828125	2	552.273706	1102.53286	-0.4654	-0.00025703	0.072189	3.9868E-05	-0.39321	-0.00021716	552.7748906125297	36.007	0.30382	36.007	35.83	36.133	0					9	5	2	0	0	0	0.82939	1	12005	12005		13.615	3.5409	1	1162100			48541	4494	35286	35572	47445	47445					-0.014305283622434217
SIPTQSLGL	9	Unmodified	_SIPTQSLGL_					0	0	0			REV__ENSG00000147050|ENST00000611820|KDM6A	REV__ENSG00000147050|ENST00000611820|KDM6A	MULTI-SECPEP	A375_MHC_IP_R2	2	458.6608581542969	2	458.260925	914.507297	-0.36787	-0.00016858	0.4459	0.00020434	0.078038	3.5762E-05	458.2610695342592	82.208	0.56126	82.951	82.684	83.246	0.74293					18	10	2	0	0	0	0.31606	1	31217	31217		20.415	0	1	2237300	+		48542	19563	35287	35573	47446	47446					0.04662365177614447
SIPTSAQPSV	10	Unmodified	_SIPTSAQPSV_					0	0	0			REV__ENST00000572085.5_1_15:43707600-43785241:-|nuORF	REV__ENST00000572085.5_1_15:43707600-43785241:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	493.12042236328125	2	493.761289	985.508025	-0.77115	-0.00038076	-0.39834	-0.00019668	-1.1695	-0.00057745	493.76115137800434	58.098	0.50562	58.846	58.578	59.083	0.74894					15	9	2	0	0	0	0.77204	1	22053	22053		16.149	2.2431	1	1153200	+		48543	16532	35288	35574	47447	47447					0.014691598266722394
SIPVRQTP	8	Unmodified	_SIPVRQTP_					0	0	0			REV__nc|ENSG00000136826|O43474-5|KLF4	REV__nc|ENSG00000136826|O43474-5|KLF4	MULTI-MSMS	A375_MHC_IP_R1	1	449.661376953125	2	449.261259	896.507966	-0.11253	-5.0558E-05	0.4788	0.00021511	0.36627	0.00016455	449.26125724035586	54.779	0.45807	54.779	54.567	55.025	0					14	8	2	0	0	0	0.73946	1	19617	19617		23.148	2.6948	1	1463400	+		48544	27245	35289	35575	47448	47448					0.055572046173210765
SIPVSGSWA	9	Unmodified	_SIPVSGSWA_					0	0	0			REV__PCDH20|p.S167P|1|0.31|ENSG00000280165|chr13:61413600-61413600|A/G|missense_variant	REV__PCDH20|p.S167P|1|0.31|ENSG00000280165|chr13:61413600-61413600|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	452.63372802734375	2	452.232168	902.449782	-0.25971	-0.00011745	2.943	0.0013309	2.6833	0.0012135	452.233181358679	76.989	0.55368	77.732	77.354	77.908	0.74293					15	10	2	0	0	0	0.58047	1	29249	29249		15.847	1.9411	1	1420600	+		48545	27727	35290	35576	47449	47449					-0.005344770279521072
SIPVSGSWA	9	Unmodified	_SIPVSGSWA_					0	0	0			REV__PCDH20|p.S167P|1|0.31|ENSG00000280165|chr13:61413600-61413600|A/G|missense_variant	REV__PCDH20|p.S167P|1|0.31|ENSG00000280165|chr13:61413600-61413600|A/G|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	452.232168	902.449782	-0.13984	-6.324E-05	3.3111	0.0014974	3.1712	0.0014341	452.2336493995512	77.782	0.40981	77.782	77.537	77.946	0	0.025012	6.3466E-05	NaN	15.847	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	857850	+		48546	27727	35290	35576							-0.005344770279521072
SIPVSGSWA	9	Unmodified	_SIPVSGSWA_					0	0	0			REV__PCDH20|p.S167P|1|0.31|ENSG00000280165|chr13:61413600-61413600|A/G|missense_variant	REV__PCDH20|p.S167P|1|0.31|ENSG00000280165|chr13:61413600-61413600|A/G|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	452.232168	902.449782	-0.25971	-0.00011745	2.943	0.0013309	2.6833	0.0012135	452.233181358679	76.989	0.55368	77.732	77.354	77.908	0.74293	-0.025012	-0.00026945	NaN	15.847	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1420600	+		48547	27727	35290	35576							-0.005344770279521072
SIQAGAGDGEW	11	Unmodified	_SIQAGAGDGEW_					0	0	0		AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK	AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	545.681884765625	2	545.743628	1089.4727	-0.42965	-0.00023448	-0.86674	-0.00047302	-1.2964	-0.0007075	545.7429239821155	71.082	0.36052	71.082	70.85	71.211	0					13	6	3	0	0	0	0.9889	1	25862	25862		12.241	12.241	1	1968900			48548	87	35291	35577	47450	47450					-0.06845502701139594
SIQCYLRAL	9	Unmodified	_SIQCYLRAL_					0	0	0		nc|ENSG00000134240|P54868-2|HMGCS2;ENSG00000134240|ENST00000369406|HMGCS2	nc|ENSG00000134240|P54868-2|HMGCS2	nc|ENSG00000134240|P54868-2|HMGCS2	MULTI-SECPEP	A375_MHC_IP_R1	1	533.077392578125	2	533.789327	1065.5641	-0.8626	-0.00046044	1.5088	0.00080538	0.6462	0.00034493	534.2922881463073	84.802	0.41016	84.802	84.442	84.852	0					10	7	2	0	0	0	0.71541	1	30936	30936		16.942	1.0951	1	1329300			48549	4557	35292	35578	47451	47451					0.03394089462494776
SIQELLPFL	9	Unmodified	_SIQELLPFL_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MSMS	A375_MHC_IP_R1	1	530.4578857421875	2	530.307875	1058.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.37	1	136.37	135.87	136.87	0								0	0	0	0.15486	1	52533	52533		11.64	0.81637	1		+		48550	19422	35293	35579	47452	47452					0.07424084279887211
SIQHNLCDD	9	Unmodified	_SIQHNLCDD_					0	0	0			REV__nc|ENSG00000064933|P54277-4|PMS1	REV__nc|ENSG00000064933|P54277-4|PMS1	MULTI-MSMS	A375_MHC_IP_R1	1	523.2059326171875	2	522.724381	1043.43421	-0.47872	-0.00025024	-0.11893	-6.2165E-05	-0.59765	-0.00031241	522.7243021681721	31.867	0.66276	31.867	31.465	32.127	0					27	12	3	0	0	0	0.53367	1	10115	10115		18.146	1.2041	1	8156600	+		48551	16484	35294	35580	47453	47453					-0.0857713160730782
SIQHQSITK	9	Unmodified	_SIQHQSITK_					0	0	0			REV__ENSG00000198786|ENST00000361567|MT-ND5	REV__ENSG00000198786|ENST00000361567|MT-ND5	MULTI-SECPEP	A375_MHC_IP_R1	1	521.16650390625	2	521.288005	1040.56146	-0.58486	-0.00030488	-0.17482	-9.1134E-05	-0.75969	-0.00039602	521.2877488348113	46.52	0.35341	46.52	46.345	46.699	0					9	6	2	0	0	0	0.67539	1	16290	16290		21.537	12.944	1	2981000	+		48552	22417	35295	35581	47454	47454					0.04279957329163153
SIQLTNRQY	9	Unmodified	_SIQLTNRQY_					0	0	0			REV__ENSG00000236027|ENST00000445202|PATE3	REV__ENSG00000236027|ENST00000445202|PATE3	MULTI-SECPEP	A375_MHC_IP_R1	1	562.1820678710938	2	561.798737	1121.58292	-0.45404	-0.00025508	-0.42617	-0.00023942	-0.88021	-0.0004945	561.7985987452984	36.13	0.30389	36.13	35.932	36.236	0					10	5	2	0	0	0	0.63622	1	12023	12023		26.884	26.884	1	1347600	+		48553	22757	35296	35582	47455	47455					0.026993423579142473
SIQLTNRQY	9	Unmodified	_SIQLTNRQY_					0	0	0			REV__ENSG00000236027|ENST00000445202|PATE3	REV__ENSG00000236027|ENST00000445202|PATE3	MULTI-MSMS	A375_MHC_IP_R2	2	375.25732421875	3	374.86825	1121.58292	0.077075	2.8893E-05	0.00678	2.5416E-06	0.083855	3.1435E-05	374.86819433765487	35.318	0.50441	36.081	35.829	36.333	0.76338					23	9	3	0	0	0	0.35581	1	12705	12705		19.362	7.8441	1	6829600	+		48554	22757	35296	35582	47456	47456					0.026993423579142473
SIQLTNRQY	9	Unmodified	_SIQLTNRQY_					0	0	0			REV__ENSG00000236027|ENST00000445202|PATE3	REV__ENSG00000236027|ENST00000445202|PATE3	MULTI-SECPEP	A375_MHC_IP_R2	2	561.6555786132812	2	561.798737	1121.58292	-0.82848	-0.00046544	-0.73423	-0.00041249	-1.5627	-0.00087793	561.7981947944777	35.336	0.50494	36.099	35.778	36.283	0.76338					12	9	2	0	0	0	0.71071	1	12696	12696		20.454	8.213	1	1638900	+		48555	22757	35296	35582	47457	47457					0.026993423579142473
SIQNHVQKREA	11	Unmodified	_SIQNHVQKREA_					0	0	0		EFHC1|p.R536Q|1|0.57|ENSG00000096093|chr6:52479754-52479754|G/A|missense_variant	EFHC1|p.R536Q|1|0.57|ENSG00000096093|chr6:52479754-52479754|G/A|missense_variant	EFHC1|p.R536Q|1|0.57|ENSG00000096093|chr6:52479754-52479754|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	655.7513427734375	2	655.3522	1308.68985	-0.85754	-0.00056199	-0.8119	-0.00053208	-1.6694	-0.0010941	655.3516060738015	130.82	0.71091	131.03	130.75	131.46	0.2142					35	13	3	0	0	0	0.73732	1	51622	51622		4.1895	4.1895	1	21079000			48556	827	35297	35583	47458	47458					0.047848925722973945
SIQNLVKVY	9	Unmodified	_SIQNLVKVY_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	A375_MHC_IP_R1	1	532.2003784179688	2	532.310949	1062.60735	-0.77216	-0.00041103	0.50624	0.00026948	-0.26592	-0.00014155	532.3110495227814	28.92	0.30194	28.92	28.694	28.996	0					9	5	2	0	0	0	0.68046	1	8896	8896		13.508	1.8676	1	2706600			48557	6906	35298	35584	47459	47459					0.07854602511406483
SIQNYNIYL	9	Unmodified	_SIQNYNIYL_					0	0	0			REV__LRRN1|p.H152Y|1|0.36|ENSG00000175928|chr3:3845095-3845095|C/T|missense_variant	REV__LRRN1|p.H152Y|1|0.36|ENSG00000175928|chr3:3845095-3845095|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	564.1393432617188	2	564.290214	1126.56587	-0.76892	-0.00043389	-0.56197	-0.00031712	-1.3309	-0.00075101	564.2897169564471	71.807	0.60708	72.541	72.314	72.921	0.73421					13	11	2	0	0	0	0.71541	1	27225	27225		3.9444	0	1	1607000	+		48558	26961	35299	35585	47460	47460					0.007654217520666862
SIQNYTISSN	10	Unmodified	_SIQNYTISSN_					0	0	0		ENSG00000177839|ENST00000316105|PCDHB9	ENSG00000177839|ENST00000316105|PCDHB9	ENSG00000177839|ENST00000316105|PCDHB9	MULTI-SECPEP	A375_MHC_IP_R2	2	563.1735229492188	2	563.772385	1125.53022	-0.51843	-0.00029228	-1.6383	-0.00092364	-2.1568	-0.0012159	563.7718770346955	77.17	0.40591	77.913	77.707	78.113	0.74293					10	7	2	0	0	0	0.88918	1	29235	29235		8.7454	8.7454	1	1667200			48559	8111	35300	35586	47461	47461					-0.027526604955710354
SIQPRRRWWWL	11	Unmodified	_SIQPRRRWWWL_					0	0	0		ENST00000591247.5_1_17:42113394-42113565:-|nuORF;LSM12|p.V173Gfs*85|1|0.36|ENSG00000161654|chr17:44036278-44036278|A/-|frameshift_variant	ENST00000591247.5_1_17:42113394-42113565:-|nuORF	ENST00000591247.5_1_17:42113394-42113565:-|nuORF	MSMS	A375_MHC_IP_R1	1	528.6390380859375	3	528.628388	1582.86333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.696	1	84.696	84.196	85.196	0								0	0	0	0.16334	1	31029	31029		1.3296	0.82369	1				48560	13793	35301	35587	47462	47462					0.09521723139209826
SIQPYSDGGP	10	Unmodified	_SIQPYSDGGP_					0	0	0		NID2|p.P424S|1|0.33|ENSG00000087303|chr14:52053738-52053738|G/A|missense_variant	NID2|p.P424S|1|0.33|ENSG00000087303|chr14:52053738-52053738|G/A|missense_variant	NID2|p.P424S|1|0.33|ENSG00000087303|chr14:52053738-52053738|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	510.6206970214844	2	510.735271	1019.45599	-0.79505	-0.00040606	0.39079	0.00019959	-0.40427	-0.00020647	510.73537539737396	67.539	0.91396	67.539	67.194	68.108	0					28	17	2	0	0	0	0.69306	1	24615	24615		13.906	0.39817	1	3478100			48561	14995	35302	35588	47463	47463					-0.05296003587091036
SIQQSFKLDRD	11	Unmodified	_SIQQSFKLDRD_					0	0	0			REV__ENST00000497341.5_1_2:27480525-27481182:-|nuORF	REV__ENST00000497341.5_1_2:27480525-27481182:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	446.97650146484375	3	446.233369	1335.67828	-0.75248	-0.00033578	-0.49146	-0.0002193	-1.2439	-0.00055509	446.56762727987916	24.645	0.45634	25.289	25.212	25.668	0.64368					16	8	2	0	0	0	0.99625	1	8120	8120		2.6312	0	1	3204200	+		48562	25469	35303	35589	47464	47464					0.023866507582852137
SIQRDKFDLM	10	Unmodified	_SIQRDKFDLM_					0	0	0			REV__tr|U7SRL1|U7SRL1_FUSNUManganese/zinc/irontransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01563PE=4SV=1	REV__tr|U7SRL1|U7SRL1_FUSNUManganese/zinc/irontransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01563PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	626.192138671875	2	626.821355	1251.62816	-0.51419	-0.0003223	-2.6782	-0.0016787	-3.1923	-0.002001	626.8194631957625	101.49	0.50621	101.49	101.24	101.75	0					12	9	2	0	0	0	0.88918	1	37336	37336		2.7352	0	1	1332800	+		48563	28402	35304	35590	47465	47465					0.01240824828755649
SIQRKQEKL	9	Unmodified	_SIQRKQEKL_					0	0	0		nc|ENSG00000100578|Q9BVV6-2|KIAA0586;nc|ENSG00000100578|Q9BVV6-4|KIAA0586;nc|ENSG00000100578|Q9BVV6|KIAA0586;ENSG00000100578|ENST00000652326|KIAA0586;ENST00000538571.6_1_14:58909433-59003756:+|nuORF;nc|ENSG00000100578|Q9BVV6-3|KIAA0586	nc|ENSG00000100578|Q9BVV6-2|KIAA0586	nc|ENSG00000100578|Q9BVV6-2|KIAA0586	MULTI-MSMS	A375_MHC_IP_R1	1	377.6206970214844	3	377.227779	1128.66151	0.0531	2.0031E-05	-0.16545	-6.2411E-05	-0.11235	-4.238E-05	377.22765464991704	23.484	0.45779	23.484	23.33	23.787	0					14	8	3	0	0	0	0.6343	1	6470	6470		12.873	0	1	3671200			48564	2195	35305	35591	47466	47466					0.10232194662989968
SIQRKQEKL	9	Unmodified	_SIQRKQEKL_					0	0	0		nc|ENSG00000100578|Q9BVV6-2|KIAA0586;nc|ENSG00000100578|Q9BVV6-4|KIAA0586;nc|ENSG00000100578|Q9BVV6|KIAA0586;ENSG00000100578|ENST00000652326|KIAA0586;ENST00000538571.6_1_14:58909433-59003756:+|nuORF;nc|ENSG00000100578|Q9BVV6-3|KIAA0586	nc|ENSG00000100578|Q9BVV6-2|KIAA0586	nc|ENSG00000100578|Q9BVV6-2|KIAA0586	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	377.227779	1128.66151	0.0531	2.0031E-05	-0.16545	-6.2411E-05	-0.11235	-4.238E-05	377.22765464991704	23.484	0.45779	23.484	23.33	23.787	0	0	0	NaN	12.873	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3671200			48565	2195	35305	35591							0.10232194662989968
SIQSQLLCI	9	Unmodified	_SIQSQLLCI_					0	0	0			REV__ENSG00000161850|ENST00000257974|KRT82	REV__ENSG00000161850|ENST00000257974|KRT82	MULTI-SECPEP	A375_MHC_IP_R2	2	502.1714782714844	2	502.775885	1003.53722	-0.76115	-0.00038269	-2.1714	-0.0010917	-2.9325	-0.0014744	502.7743920548186	71.004	0.811	71.738	71.402	72.213	0.73421					17	15	2	0	0	0	0.47368	1	27114	27114		26.884	11.115	1	2813300	+	+	48566	15902	35306	35592	47467	47467					0.0355898085130093
SIQSTLIKL	9	Unmodified	_SIQSTLIKL_					0	0	0		L1MB7_dup9932|chr8:58560717-58562310:+|1.3153910631107617|0.0447379494579893|4.88|444.0|113|3|anti-sense	L1MB7_dup9932|chr8:58560717-58562310:+|1.3153910631107617|0.0447379494579893|4.88|444.0|113|3|anti-sense	L1MB7_dup9932|chr8:58560717-58562310:+|1.3153910631107617|0.0447379494579893|4.88|444.0|113|3|anti-sense	MULTI-SECPEP	A375_MHC_IP_R2	2	501.62884521484375	2	501.813325	1001.6121	-0.67839	-0.00034043	-0.49977	-0.00025079	-1.1782	-0.00059122	502.3141535192233	40.36	0.30457	41.135	40.98	41.285	0.77451					7	5	2	0	0	0	0.65527	1	14947	14947		17.113	4.5813	1	670780			48567	14258	35307	35593	47468	47468					0.11135486654177384
SIQVESGPW	9	Unmodified	_SIQVESGPW_					0	0	0		ENSG00000100053|ENST00000215855|CRYBB3	ENSG00000100053|ENST00000215855|CRYBB3	ENSG00000100053|ENST00000215855|CRYBB3	MULTI-MSMS	A375_MHC_IP_R2	2	502.20794677734375	2	501.748182	1001.48181	-0.72336	-0.00036295	0.6627	0.00033251	-0.060667	-3.0439E-05	501.74837108840103	50.752	0.65869	51.506	51.006	51.665	0.75406					16	12	2	0	0	0	0.69674	1	19025	19025		7.2892	0	1	1094100			48568	2107	35308	35594	47469	47469					-0.018871093448069587
SIQWVYNI	8	Unmodified	_SIQWVYNI_					0	0	0		ENSG00000110063|ENST00000263579|DCPS	ENSG00000110063|ENST00000263579|DCPS	ENSG00000110063|ENST00000263579|DCPS	MULTI-MSMS	A375_MHC_IP_R1	1	512.2211303710938	2	511.768917	1021.52328	-0.35911	-0.00018378	0.44014	0.00022525	0.081033	4.147E-05	511.76906810085865	78.147	0.45691	78.147	77.895	78.352	0					13	8	2	0	0	0	0.75805	1	28449	28449		18.135	3.5533	1	3526600			48569	2915	35309	35595	47470	47470					0.013380714145000638
SIRAVFIFLWL	11	Unmodified	_SIRAVFIFLWL_					0	0	0		nc|ENSG00000211788|A0A0B4J241|TRAV13-1	nc|ENSG00000211788|A0A0B4J241|TRAV13-1	nc|ENSG00000211788|A0A0B4J241|TRAV13-1	MSMS	A375_MHC_IP_R1	1	682.7843627929688	2	682.908091	1363.80163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.975	1	91.975	91.475	92.475	0								0	0	0	0.16297	1	33798	33798		3.2813	0.54611	1				48570	14880	35310	35596	47471	47471					0.13427978667368734
SIRAVFIFLWL	11	Unmodified	_SIRAVFIFLWL_					0	0	0		nc|ENSG00000211788|A0A0B4J241|TRAV13-1	nc|ENSG00000211788|A0A0B4J241|TRAV13-1	nc|ENSG00000211788|A0A0B4J241|TRAV13-1	MSMS	A375_MHC_IP_R1	1	682.9588623046875	2	682.908091	1363.80163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.004	1	92.004	91.504	92.504	0								0	0	0	0.1624	1	33808	33808		6.2058	0.9089	1				48571	14880	35310	35596	47472	47472					0.13427978667368734
SIREILSSV	9	Unmodified	_SIREILSSV_					0	0	0			REV__ENSG00000065485|ENST00000316218|PDIA5	REV__ENSG00000065485|ENST00000316218|PDIA5	MULTI-SECPEP	A375_MHC_IP_R1	1	502.14129638671875	2	502.292756	1002.57096	-0.44471	-0.00022338	0.15266	7.668E-05	-0.29205	-0.0001467	502.2927294389301	76.446	1.1173	76.446	76.067	77.184	0					36	21	3	0	0	0	0.31606	1	27998	27998		47.749	15.443	1	10111000	+		48572	16499	35311	35597	47473	47473					0.06977725614729025
SIRELVHRI	9	Unmodified	_SIRELVHRI_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;TUBGCP2|p.P265S|1|0.55|ENSG00000130640|chr10:133293593-133293593|G/A|missense_variant	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	MULTI-SECPEP	A375_MHC_IP_R2	2	375.61688232421875	3	374.896252	1121.66693	0.28779	0.00010789	0.68455	0.00025663	0.97234	0.00036453	374.8961456354057	27.179	0.46016	27.858	27.587	28.047	0.67857					12	8	2	0	0	0	0.80332	1	9251	9251		0.20686	0.066965	1	1050200			48573	4259	35312	35598	47474	47474					0.11095918245473513
SIRFARHQAWV	11	Unmodified	_SIRFARHQAWV_					0	0	0			REV__ENST00000359491.1_1_14:64804837-64805239:-|nuORF	REV__ENST00000359491.1_1_14:64804837-64805239:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	686.27490234375	2	685.875645	1369.73674	-0.5785	-0.00039678	-0.84472	-0.00057937	-1.4232	-0.00097615	685.8750087157222	96.488	0.55863	96.488	96.223	96.781	0					22	10	3	0	0	0	0.99018	1	35460	35460		4.5289	1.2476	1	3416300	+		48574	23875	35313	35599	47475	47475					0.06665796914080602
SIRFARHQAWV	11	Unmodified	_SIRFARHQAWV_					0	0	0			REV__ENST00000359491.1_1_14:64804837-64805239:-|nuORF	REV__ENST00000359491.1_1_14:64804837-64805239:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	686.27490234375	2	685.875645	1369.73674	-0.51425	-0.00035271	-0.51626	-0.00035409	-1.0305	-0.0007068	685.8749387356263	95.593	0.51015	96.343	96.041	96.551	0.75045					22	9	4	0	0	0	0.92455	1	36311	36311		16.149	3.1066	1	3676900	+		48575	23875	35313	35599	47476	47476					0.06665796914080602
SIRHRSRVL	9	Unmodified	_SIRHRSRVL_					0	0	0			REV__TRIB3|p.P155S|1|0.59|ENSG00000101255|chr20:391458-391458|C/T|missense_variant	REV__TRIB3|p.P155S|1|0.59|ENSG00000101255|chr20:391458-391458|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	562.7420654296875	2	562.343981	1122.67341	-0.3229	-0.00018158	-1.4784	-0.0008314	-1.8014	-0.001013	562.3431457988706	125.91	0.70276	125.91	125.45	126.15	0					16	13	2	0	0	0	0.73415	1	48050	48050		3.9444	3.9444	1	15051000	+		48576	28898	35314	35600	47477	47477					0.11697856196838075
SIRLLNHV	8	Unmodified	_SIRLLNHV_					0	0	0			REV__ENST00000561685.1_1_16:15168568-15177423:-|nuORF;REV__nc|ENSG00000103472|A6NIE6|RRN3P2	REV__ENST00000561685.1_1_16:15168568-15177423:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	476.6899719238281	2	476.290351	950.566149	-0.72376	-0.00034472	-0.095358	-4.5418E-05	-0.81912	-0.00039014	476.2902132360975	34.682	0.35427	35.445	35.273	35.627	0.76338					14	6	3	0	0	0	0.64461	1	12555	12555		45.7	0	1	5001500	+		48577	16842;24672	35315	35601	47478	47478					0.08888886262604956
SIRLLRKKH	9	Unmodified	_SIRLLRKKH_					0	0	0			REV__CACNA1E|p.E462K|3|0.14|ENSG00000198216|chr1:181717161-181717161|G/A|missense_variant	REV__CACNA1E|p.E462K|3|0.14|ENSG00000198216|chr1:181717161-181717161|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	576.0281372070312	2	575.880199	1149.74584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.053	1	56.803	56.303	57.303	0.75015								0	0	0	0.15486	1	21182	21182		2.0598	0	1		+		48578	15550	35316	35602	47479	47479					0.17696190270407897
SIRMTKGITM	10	Unmodified	_SIRMTKGITM_					0	0	0		ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	MULTI-SECPEP	A375_MHC_IP_R2	2	569.7003784179688	2	569.309569	1136.60458	-0.26462	-0.00015065	4.4253	0.0025193	4.1606	0.0023687	569.3138560369049	101.76	0.45828	102.53	102.16	102.62	0.76428					11	8	2	0	0	0	0.77204	1	38475	38475		21.537	10.713	1	855860			48579	7658	35317	35603	47480	47480					0.041746877906007285
SIRNRTVKWA	10	Unmodified	_SIRNRTVKWA_					0	0	0			REV__ENST00000526754.5_1_14:73567032-73567452:+|nuORF	REV__ENST00000526754.5_1_14:73567032-73567452:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	410.12384033203125	3	410.907039	1229.69929	-0.11904	-4.8916E-05	2.8683	0.0011786	2.7492	0.0011297	411.2429259220177	36.023	0.25545	36.786	36.638	36.894	0.76338					6	4	2	0	0	0	0.94269	1	13141	13141		1.5923	0	1	657530	+		48580	25780	35318	35604	47481	47481					0.09362705648482006
SIRQTMKLY	9	Unmodified	_SIRQTMKLY_					0	0	0			REV__ENSG00000100575|ENST00000395159|TIMM9	REV__ENSG00000100575|ENST00000395159|TIMM9	MULTI-SECPEP	A375_MHC_IP_R1	1	381.2890625	3	380.546231	1138.61686	0.48508	0.0001846	-0.21814	-8.3011E-05	0.26694	0.00010158	380.8803215344609	20.637	0.71378	20.637	20.384	21.098	0					14	13	2	0	0	0	0.7911	1	5477	5477		7.609	0.50723	1	626970	+		48581	17102	35319	35605	47482	47482					0.05310047525313166
SIRRGEVP	8	Unmodified	_SIRRGEVP_					0	0	0		nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-6|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MULTI-MSMS	A375_MHC_IP_R2	2	457.66424560546875	2	457.264333	912.514114	-0.16701	-7.6366E-05	0.16619	7.5991E-05	-0.00081954	-3.7474E-07	457.2643102122108	108.83	6.2759	109.57	108.24	114.52	0.74683					354	122	3	0	0	0	0.77702	2	42326	42326;42532		5.7604	0	1	33927000			48582	1899	35320	35606	47483;47484	47483					0.05435722848858404
SIRRKSFRF	9	Unmodified	_SIRRKSFRF_					0	0	0		SCN2A|p.G536S|1|0.29|ENSG00000136531|chr2:165315693-165315693|G/A|missense_variant	SCN2A|p.G536S|1|0.29|ENSG00000136531|chr2:165315693-165315693|G/A|missense_variant	SCN2A|p.G536S|1|0.29|ENSG00000136531|chr2:165315693-165315693|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	399.60791015625	3	399.57188	1195.69381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.059	1	40.833	40.333	41.333	0.77451								0	0	0	0.15486	1	14820	14820		7.1017	1.3699	1				48583	29115	35321	35607	47485	47485					0.10379026856639939
SIRRRRGWRRM	11	Unmodified	_SIRRRRGWRRM_					0	0	0			REV__ENST00000272298.11_1_2:47397893-47403686:-|nuORF	REV__ENST00000272298.11_1_2:47397893-47403686:-|nuORF	MSMS	A375_MHC_IP_R2	2	510.6889953613281	3	510.632138	1528.87458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.854	1	83.596	83.096	84.096	0.74133								0	0	0	0.16334	1	31480	31480		1.3296	0.21989	1		+		48584	23278	35322	35608	47486	47486					0.13130221961682764
SIRSEDRKL	9	Unmodified	_SIRSEDRKL_					0	0	0		ENST00000438423.6_1_15:57578509-57578554:+|nuORF	ENST00000438423.6_1_15:57578509-57578554:+|nuORF	ENST00000438423.6_1_15:57578509-57578554:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	368.60137939453125	3	368.543767	1102.60947	0.0792	2.9188E-05	-0.37613	-0.00013862	-0.29693	-0.00010943	368.543700603518	24.198	0.85963	24.198	23.838	24.698	0					21	14	2	0	0	0	0.69884	1	6962	6962		7.1017	0.89594	1	8324500			48585	11949	35323	35609	47487	47487					0.06227031249227366
SIRSEDRKL	9	Unmodified	_SIRSEDRKL_					0	0	0		ENST00000438423.6_1_15:57578509-57578554:+|nuORF	ENST00000438423.6_1_15:57578509-57578554:+|nuORF	ENST00000438423.6_1_15:57578509-57578554:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	368.543767	1102.60947	-0.070676	-2.6047E-05	-0.13207	-4.8674E-05	-0.20275	-7.4721E-05	368.5437697189445	23.474	0.60727	24.104	23.726	24.333	0.63014	-0.046992	4.842E-05	NaN	7.1017	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7094900			48586	11949	35323	35609							0.06227031249227366
SIRTMRTLFKK	11	Unmodified	_SIRTMRTLFKK_					0	0	0			REV__ENST00000531771.5_1_11:85718509-85733504:-|nuORF	REV__ENST00000531771.5_1_11:85718509-85733504:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	461.13946533203125	3	460.942985	1379.80712	-0.50584	-0.00023316	-0.029665	-1.3674E-05	-0.53551	-0.00024684	460.94310670837575	67.007	0.81212	67.743	67.393	68.205	0.73631					29	15	3	0	0	0	1.0011	1	25559	25559		1.3296	0.87513	1	938190	+		48587	16627	35324	35610	47488	47488					0.13241334187500797
SIRTMRTLFKK	11	Unmodified	_SIRTMRTLFKK_					0	0	0			REV__ENST00000531771.5_1_11:85718509-85733504:-|nuORF	REV__ENST00000531771.5_1_11:85718509-85733504:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	460.942985	1379.80712	-0.62108	-0.00028628	0.049236	2.2695E-05	-0.57184	-0.00026359	460.9429455197041	67.879	0.55732	67.879	67.5	68.057	0	0.067962	5.8563E-05	NaN	1.3296	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1247800	+		48588	16627	35324	35610							0.13241334187500797
SIRTRQYL	8	Unmodified	_SIRTRQYL_					0	0	0			REV__ENSG00000178057|ENST00000326925|NDUFAF3	REV__ENSG00000178057|ENST00000326925|NDUFAF3	MULTI-SECPEP	A375_MHC_IP_R1	1	518.0237426757812	2	518.79854	1035.58253	-0.48453	-0.00025137	-0.049619	-2.5742E-05	-0.53415	-0.00027712	518.7982256726939	104.36	0.55875	104.36	104.18	104.74	0					18	10	2	0	0	0	0.972	1	38441	38441		2.5775	2.5775	1	808120	+		48589	21484	35325	35611	47489	47489					0.06615967428683689
SIRTRQYL	8	Unmodified	_SIRTRQYL_					0	0	0			REV__ENSG00000178057|ENST00000326925|NDUFAF3	REV__ENSG00000178057|ENST00000326925|NDUFAF3	MULTI-MATCH	A375_MHC_IP_R2	2		2	518.79854	1035.58253	-0.66082	-0.00034283	0.2029	0.00010527	-0.45791	-0.00023756	519.3004651059347	103.84	0.81231	104.6	104.04	104.85	0.76428	0.11763	0.00015714	NaN	2.5775	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	938200	+		48590	21484	35325	35611							0.06615967428683689
SIRYPYRPD	9	Unmodified	_SIRYPYRPD_					0	0	0		ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2	ENSG00000141934|ENST00000434325|PLPP2	ENSG00000141934|ENST00000434325|PLPP2	MSMS	A375_MHC_IP_R2	2	583.689697265625	2	583.80128	1165.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.737	1	66.476	65.976	66.976	0.73811								0	0	0	0.15142	1	24923	24923		19.257	0	1				48591	5278	35326	35612	47490	47490					0.011836462205110365
SISARYAEE	9	Unmodified	_SISARYAEE_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MULTI-MSMS	A375_MHC_IP_R1	1	513.6485595703125	2	513.248546	1024.48254	-0.37074	-0.00019028	-0.066687	-3.4227E-05	-0.43743	-0.00022451	513.2484318054552	40.524	0.35597	40.524	40.304	40.66	0					14	6	3	0	0	0	0.4867	1	13964	13964		20.454	3.5113	1	3519800			48592	4474	35327	35613	47491	47491					-0.02872314695764544
SISAVLPAPSA	11	Unmodified	_SISAVLPAPSA_					0	0	0			REV__nc|ENSG00000186047|Q6UYE1-2|DLEU7	REV__nc|ENSG00000186047|Q6UYE1-2|DLEU7	MULTI-MSMS	A375_MHC_IP_R2	2	507.2229309082031	2	506.787307	1011.56006	-0.76899	-0.00038972	0.081439	4.1272E-05	-0.68756	-0.00034844	506.78711099963874	72.894	0.45792	73.63	73.429	73.887	0.7354					13	8	2	0	0	0	0.62292	1	27603	27603		21.537	3.3906	1	1145400	+		48593	21941	35328	35614	47492	47492					0.05474323240423473
SISDHVLTL	9	Unmodified	_SISDHVLTL_					0	0	0		RGS7|p.P93S|1|0.19|ENSG00000182901|chr1:240936656-240936656|G/A|missense_variant	RGS7|p.P93S|1|0.19|ENSG00000182901|chr1:240936656-240936656|G/A|missense_variant	RGS7|p.P93S|1|0.19|ENSG00000182901|chr1:240936656-240936656|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	492.6240234375	2	492.771657	983.528761	-0.31206	-0.00015377	-0.38924	-0.00019181	-0.70129	-0.00034558	492.77132435937466	98.645	0.35802	98.645	98.455	98.813	0					11	6	2	0	0	0	0.43185	1	36216	36216		23.148	6.2061	1	997550			48594	29074	35329	35615	47493	47493					0.036337502063247484
SISDLKSLAT	10	Unmodified	_SISDLKSLAT_					0	0	0		ENST00000324309.8_1_4:24833126-24981729:-|nuORF;nc|ENSG00000181982|Q6ZUS6-2|CCDC149;nc|ENSG00000181982|Q6ZUS6-6|CCDC149;nc|ENSG00000181982|Q6ZUS6|CCDC149;nc|ENSG00000181982|Q6ZUS6-5|CCDC149;nc|ENSG00000181982|Q6ZUS6-4|CCDC149;ENSG00000181982|ENST00000635206|CCDC149	ENST00000324309.8_1_4:24833126-24981729:-|nuORF	ENST00000324309.8_1_4:24833126-24981729:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	518.1895751953125	2	517.790047	1033.56554	-0.40685	-0.00021066	-0.69435	-0.00035953	-1.1012	-0.00057019	517.7897566368766	82.702	0.85982	82.702	82.265	83.125	0					48	16	4	0	0	0	0.36543	1	30207	30207		49.527	11.352	1	9849400			48595	8369	35330	35616	47494	47494					0.05010002032236116
SISDLKSLAT	10	Unmodified	_SISDLKSLAT_					0	0	0		ENST00000324309.8_1_4:24833126-24981729:-|nuORF;nc|ENSG00000181982|Q6ZUS6-2|CCDC149;nc|ENSG00000181982|Q6ZUS6-6|CCDC149;nc|ENSG00000181982|Q6ZUS6|CCDC149;nc|ENSG00000181982|Q6ZUS6-5|CCDC149;nc|ENSG00000181982|Q6ZUS6-4|CCDC149;ENSG00000181982|ENST00000635206|CCDC149	ENST00000324309.8_1_4:24833126-24981729:-|nuORF	ENST00000324309.8_1_4:24833126-24981729:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	517.7051391601562	2	517.790047	1033.56554	-0.7851	-0.00040652	-0.32277	-0.00016712	-1.1079	-0.00057364	517.7899713466913	81.86	0.71075	82.603	82.229	82.94	0.74294					39	13	4	0	0	0	0.27133	1	31099	31099		41.956	0.11592	1	12144000			48596	8369	35330	35616	47495	47495					0.05010002032236116
SISDVFRQY	9	Unmodified	_SISDVFRQY_					0	0	0		nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	MULTI-MSMS	A375_MHC_IP_R1	1	558.179931640625	2	557.780013	1113.54547	-0.38508	-0.00021479	-0.075768	-4.2262E-05	-0.46085	-0.00025705	557.7799554653282	78.396	1.0647	78.396	77.946	79.011	0					57	20	4	0	0	0	0.0085749	2	28539	28539;28734		171.09	105.85	1	57073000			48597	1929	35331	35617	47496;47497	47496					-0.006757489077244827
SISDVFRQY	9	Unmodified	_SISDVFRQY_					0	0	0		nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	MULTI-MSMS	A375_MHC_IP_R2	2	557.7059326171875	2	557.780013	1113.54547	-0.74887	-0.0004177	0.38903	0.00021699	-0.35984	-0.00020071	557.7802358891707	77.601	1.275	78.344	77.857	79.132	0.74293					65	24	4	0	0	0	0.00011313	4	29445	29445;29463;29592;29608		208.15	151.97	1	68960000			48598	1929	35331	35617	47498;47499;47500;47501	47498					-0.006757489077244827
SISDVIAQV	9	Unmodified	_SISDVIAQV_					0	0	0		ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MULTI-MSMS	A375_MHC_IP_R1	1	466.6582946777344	2	466.258382	930.502212	-0.26165	-0.000122	-0.21176	-9.8733E-05	-0.47341	-0.00022073	466.2582621087338	99.549	4.2527	99.549	98.964	103.22	0					202	83	5	0	0	0	0.0019764	4	36461	36461;36669;36797;36885		158.2	61.821	1	451070000			48599	6058	35332	35618	47502;47503;47504;47505	47502					0.034180613149942474
SISDVIAQV	9	Unmodified	_SISDVIAQV_					0	0	0		ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MULTI-MSMS	A375_MHC_IP_R1	1	933.9405517578125	1	931.509488	930.502212	-0.051261	-4.775E-05	-0.46583	-0.00043392	-0.51709	-0.00048167	931.508996767842	99.549	4.2519	99.549	99.117	103.37	0					174	83	5	0	0	0	0.01574	1	36523	36523		88.904	24.667	1	931310000			48600	6058	35332	35618	47506	47506					0.034180613149942474
SISDVIAQV	9	Unmodified	_SISDVIAQV_					0	0	0		ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MULTI-MSMS	A375_MHC_IP_R2	2	466.65850830078125	2	466.258382	930.502212	-0.52983	-0.00024704	0.17038	7.9442E-05	-0.35945	-0.00016759	466.2584689891378	98.871	4.3801	99.631	98.995	103.38	0.75977					208	85	5	0	0	0	0.0019764	5	37375	37375;37584;37623;37793;38200		158.2	51.016	1	605460000			48601	6058	35332	35618	47507;47508;47509;47510;47511	47507					0.034180613149942474
SISDVIAQV	9	Unmodified	_SISDVIAQV_					0	0	0		ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MULTI-MSMS	A375_MHC_IP_R2	2	931.908935546875	1	931.509488	930.502212	-0.14834	-0.00013818	-0.23284	-0.0002169	-0.38118	-0.00035508	931.5092355267388	98.821	3.9209	99.581	99.098	103.02	0.75977					163	76	5	0	0	0	0.009271	1	37978	37978		103.75	48.975	1	873840000			48602	6058	35332	35618	47512	47512					0.034180613149942474
SISDVTTWK	9	Unmodified	_SISDVTTWK_					0	0	0			REV__nc|ENSG00000090905|Q8NDV7-2|TNRC6A	REV__nc|ENSG00000090905|Q8NDV7-2|TNRC6A	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1893920898438	2	518.769114	1035.52368	-0.7486	-0.00038835	-0.14736	-7.6444E-05	-0.89596	-0.0004648	518.7689503678899	82.127	0.81396	82.87	82.33	83.144	0.74293					21	15	2	0	0	0	0.65246	1	31061	31061		21.747	5.8995	1	1598100	+		48603	16935	35333	35619	47513	47513					0.007334463437018712
SISESPSSPAY	11	Unmodified	_SISESPSSPAY_					0	0	0		SH2D3C|p.P409S|1|0.22|ENSG00000095370|chr9:127747186-127747186|G/A|missense_variant	SH2D3C|p.P409S|1|0.22|ENSG00000095370|chr9:127747186-127747186|G/A|missense_variant	SH2D3C|p.P409S|1|0.22|ENSG00000095370|chr9:127747186-127747186|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	562.6663818359375	2	562.758943	1123.50333	-0.75646	-0.00042571	-2.2833	-0.0012849	-3.0397	-0.0017106	562.7576293264664	51.506	0.35402	52.258	52.017	52.372	0.75225					10	6	2	0	0	0	0.4583	1	19398	19398		34.402	6.7729	1	1142700			48604	29151	35334	35620	47514	47514					-0.05347769106742817
SISFGLEPD	9	Unmodified	_SISFGLEPD_					0	0	0			REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-MSMS	A375_MHC_IP_R2	2	483.1344299316406	2	482.73474	963.454927	-0.50209	-0.00024238	0.19599	9.4613E-05	-0.3061	-0.00014776	482.7348539188711	88.838	1.5223	89.57	89.228	90.751	0.7318					38	29	2	0	0	0	0.35581	1	33879	33879		26.884	2.2098	1	1185900	+		48605	17759	35335	35621	47515	47515					-0.028262179559988
SISFGLEPD	9	Unmodified	_SISFGLEPD_					0	0	0			REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-MATCH	A375_MHC_IP_R1	1		2	482.73474	963.454927	-0.3562	-0.00017195	0.87601	0.00042288	0.51981	0.00025093	482.7351866688282	89.514	0.81104	89.514	89.221	90.032	0	-0.027671	0.00039181	NaN	26.884	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	898790	+		48606	17759	35335	35621							-0.028262179559988
SISFMKGF	8	Unmodified	_SISFMKGF_					0	0	0			REV__nc|ENSG00000203710|P17927|CR1	REV__nc|ENSG00000203710|P17927|CR1	MULTI-SECPEP	A375_MHC_IP_R1	1	459.1332092285156	2	458.733489	915.452425	-0.31373	-0.00014392	-0.11597	-5.3199E-05	-0.42969	-0.00019711	458.7334387799874	76.519	0.50493	76.519	76.219	76.724	0					23	9	3	0	0	0	0.84748	1	27889	27889		21.747	0	1	4030900	+		48607	22466	35336	35622	47516	47516					-0.008683448946385397
SISGDIIDEL	10	Unmodified	_SISGDIIDEL_					0	0	0		nc|ENSG00000133740|Q15329-3|E2F5;nc|ENSG00000133740|Q15329-2|E2F5;ENSG00000133740|ENST00000416274|E2F5	nc|ENSG00000133740|Q15329-3|E2F5	nc|ENSG00000133740|Q15329-3|E2F5	MULTI-SECPEP	A375_MHC_IP_R1	1	531.6978759765625	2	531.271687	1060.52882	-0.59455	-0.00031587	-0.55977	-0.00029739	-1.1543	-0.00061326	531.2711525976409	55.341	0.76248	55.341	54.873	55.635	0					29	14	3	0	0	0	0.24499	1	19800	19800		43.858	7.7313	1	12696000			48608	4529	35337	35623	47517	47517					0.0009770541566922475
SISGTVISLL	10	Unmodified	_SISGTVISLL_					0	0	0			REV__OR12D3|p.M206I|1|0.21|ENSG00000112462|chr6:29374670-29374670|C/T|missense_variant	REV__OR12D3|p.M206I|1|0.21|ENSG00000112462|chr6:29374670-29374670|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	989.9407958984375	1	989.587738	988.580462	0.26881	0.00026601	-0.34532	-0.00034172	-0.076503	-7.5706E-05	989.5873219229672	62.122	0.76864	62.122	61.891	62.66	0					35	14	4	0	0	0	0.011479	1	22399	22399		118.89	7.6077	1	36737000	+		48609	17733	35338	35624	47518	47518					0.08571493900251426
SISGTVISLL	10	Unmodified	_SISGTVISLL_					0	0	0			REV__OR12D3|p.M206I|1|0.21|ENSG00000112462|chr6:29374670-29374670|C/T|missense_variant	REV__OR12D3|p.M206I|1|0.21|ENSG00000112462|chr6:29374670-29374670|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	495.4140319824219	2	495.297507	988.580462	-0.30243	-0.00014979	-0.31845	-0.00015773	-0.62088	-0.00030752	495.2973596347195	62.122	2.6054	62.122	61.788	64.393	0					152	50	6	0	0	0	0.011448	1	22788	22788		111.29	26.015	1	576570000	+		48610	17733	35338	35624	47519	47519					0.08571493900251426
SISGTVISLL	10	Unmodified	_SISGTVISLL_					0	0	0			REV__OR12D3|p.M206I|1|0.21|ENSG00000112462|chr6:29374670-29374670|C/T|missense_variant	REV__OR12D3|p.M206I|1|0.21|ENSG00000112462|chr6:29374670-29374670|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	495.64599609375	2	495.297507	988.580462	-0.30243	-0.00014979	-0.31845	-0.00015773	-0.62088	-0.00030752	495.2973596347195	62.122	2.6054	62.122	61.788	64.393	0					152	50	6	0	0	0	0.034723	1	22492	22492		144.35	26.59	1	576570000	+		48611	17733	35338	35624	47520	47520					0.08571493900251426
SISGTVISLL	10	Unmodified	_SISGTVISLL_					0	0	0			REV__OR12D3|p.M206I|1|0.21|ENSG00000112462|chr6:29374670-29374670|C/T|missense_variant	REV__OR12D3|p.M206I|1|0.21|ENSG00000112462|chr6:29374670-29374670|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	495.6969909667969	2	495.297507	988.580462	-0.78017	-0.00038642	-0.22201	-0.00010996	-1.0022	-0.00049638	495.2974104763582	61.22	2.629	61.965	61.566	64.195	0.74503					143	51	5	0	0	0	0.026461	1	23329	23329		131.27	34.332	1	444790000	+		48612	17733	35338	35624	47521	47521					0.08571493900251426
SISGTVISLL	10	Unmodified	_SISGTVISLL_					0	0	0			REV__OR12D3|p.M206I|1|0.21|ENSG00000112462|chr6:29374670-29374670|C/T|missense_variant	REV__OR12D3|p.M206I|1|0.21|ENSG00000112462|chr6:29374670-29374670|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	989.587738	988.580462	0.26881	0.00026601	-0.34532	-0.00034172	-0.076503	-7.5706E-05	989.5873219229672	62.122	0.76864	62.122	61.891	62.66	0	0.073612	-0.00010256	NaN	118.89	35	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36737000	+		48613	17733	35338	35624							0.08571493900251426
SISGTVISLL	10	Unmodified	_SISGTVISLL_					0	0	0			REV__OR12D3|p.M206I|1|0.21|ENSG00000112462|chr6:29374670-29374670|C/T|missense_variant	REV__OR12D3|p.M206I|1|0.21|ENSG00000112462|chr6:29374670-29374670|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		1	989.587738	988.580462	-0.30928	-0.00030606	-0.098631	-9.7604E-05	-0.40791	-0.00040366	989.5875153988145	61.23	0.65356	61.975	61.668	62.322	0.74503	-0.073612	0.00014156	NaN	118.89	35	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22361000	+		48614	17733	35338	35624							0.08571493900251426
SISHSPASDF	10	Unmodified	_SISHSPASDF_					0	0	0			REV__nc|ENSG00000177947|Q96PU9-3|CIMAP1A	REV__nc|ENSG00000177947|Q96PU9-3|CIMAP1A	MULTI-SECPEP	A375_MHC_IP_R2	2	524.6710205078125	2	524.240721	1046.46689	-0.38145	-0.00019997	-0.26665	-0.00013979	-0.64809	-0.00033976	524.2406438940017	86.485	0.9678	87.218	86.794	87.762	0.733					31	18	2	0	0	0	0.9269	1	33094	33094		3.5965	0.31518	1	2464400	+		48615	21476	35339	35625	47522	47522					-0.054486012128108996
SISKLIKLY	9	Unmodified	_SISKLIKLY_					0	0	0		ENSG00000144962|ENST00000351008|SPATA16	ENSG00000144962|ENST00000351008|SPATA16	ENSG00000144962|ENST00000351008|SPATA16	MSMS	A375_MHC_IP_R2	2	355.5792236328125	3	355.561987	1063.66413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.526	1	36.29	35.79	36.79	0.76338								0	0	0	0.15486	1	12889	12889		2.4985	0	1				48616	5531	35340	35626	47523	47523					0.13484650067948678
SISLHVIGLN	10	Unmodified	_SISLHVIGLN_					0	0	0		ENSG00000130226|ENST00000377770|DPP6;nc|ENSG00000130226|P42658-2|DPP6	ENSG00000130226|ENST00000377770|DPP6	ENSG00000130226|ENST00000377770|DPP6	MULTI-SECPEP	A375_MHC_IP_R1	1	351.9414978027344	3	351.541475	1051.60259	-0.36071	-0.00012681	0.46931	0.00016498	0.1086	3.8176E-05	351.5416609496408	39.833	0.45732	39.833	39.592	40.05	0					19	8	3	0	0	0	0.90513	1	13675	13675		10.899	3.4219	1	3038500			48617	4230	35341	35627	47524	47524					0.07885718368675043
SISLHVIGLN	10	Unmodified	_SISLHVIGLN_					0	0	0		ENSG00000130226|ENST00000377770|DPP6;nc|ENSG00000130226|P42658-2|DPP6	ENSG00000130226|ENST00000377770|DPP6	ENSG00000130226|ENST00000377770|DPP6	MULTI-MATCH	A375_MHC_IP_R2	2		3	351.541475	1051.60259	-0.49729	-0.00017482	-0.094193	-3.3113E-05	-0.59148	-0.00020793	351.5414324138518	38.828	0.35918	39.602	39.453	39.812	0.77451	-0.11526	-0.00025173	NaN	10.899	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2292700			48618	4230	35341	35627							0.07885718368675043
SISLKHKKKIV	11	Unmodified	_SISLKHKKKIV_					0	0	0		tr|U7SFX4|U7SFX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02268PE=4SV=1	tr|U7SFX4|U7SFX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02268PE=4SV=1	tr|U7SFX4|U7SFX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02268PE=4SV=1	MSMS	A375_MHC_IP_R1	1	640.9267578125	2	640.924272	1279.83399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.11	1	120.11	119.61	120.61	0								0	0	0	0.16302	1	44470	44470		2.9952	1.6657	1				48619	29397	35342	35628	47525	47525					0.20526766070338454
SISNQLQVNL	10	Unmodified	_SISNQLQVNL_					0	0	0			REV__nc|ENSG00000144674|Q13439-3|GOLGA4	REV__nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-SECPEP	A375_MHC_IP_R1	1	557.6820068359375	2	558.306395	1114.59824	-0.7641	-0.0004266	1.7577	0.00098133	0.9936	0.00055473	558.810554987296	66.771	0.45844	66.771	66.632	67.091	0					15	8	3	0	0	0	0.92227	1	24266	24266		5.2969	1.3525	1	1587300	+		48620	19439	35343	35629	47526	47526					0.04552209155099263
SISPDIAKAV	10	Unmodified	_SISPDIAKAV_					0	0	0			REV__ENSG00000101323|ENST00000378789|HAO1	REV__ENSG00000101323|ENST00000378789|HAO1	MSMS	A375_MHC_IP_R1	1	500.7418212890625	2	500.787307	999.560061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.63	1	143.63	143.13	144.13	0								0	0	0	0.15435	1	55099	55099		6.7232	0.96273	1		+		48621	17159	35344	35630	47527	47527					0.060263232404167866
SISPEAIFASY	11	Unmodified	_SISPEAIFASY_					0	0	0			REV__NFE2L2|p.Q556Tfs*15|1|0.32|ENSG00000116044|chr2:177230937-177230938|-/T|frameshift_variant	REV__NFE2L2|p.Q556Tfs*15|1|0.32|ENSG00000116044|chr2:177230937-177230938|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	592.1198120117188	2	592.795329	1183.5761	-0.88671	-0.00052563	-0.30426	-0.00018037	-1.191	-0.000706	592.7948091405673	61.598	0.5533	62.343	62.02	62.573	0.74503					17	10	2	0	0	0	0.9754	1	23357	23357		12.241	1.4167	1	1323300	+		48622	17935	35345	35631	47528	47528					-0.00834015313330383
SISPLRPFL	9	Unmodified	_SISPLRPFL_					0	0	0			REV__ENSG00000163424|ENST00000295622|TEX55	REV__ENSG00000163424|ENST00000295622|TEX55	MULTI-SECPEP	A375_MHC_IP_R1	1	515.2576293945312	2	515.30821	1028.60187	-0.47272	-0.00024359	0.12817	6.6047E-05	-0.34455	-0.00017755	515.3080073160341	70.643	0.66534	70.643	70.392	71.057	0					28	12	3	0	0	0	0.47368	1	25734	25734		26.884	0	1	4443500	+		48623	20361	35346	35632	47529	47529					0.08870923719609891
SISPPADE	8	Unmodified	_SISPPADE_					0	0	0		CACNA1E|p.G2188E|1|0.33|ENSG00000198216|chr1:181798455-181798455|G/A|missense_variant	CACNA1E|p.G2188E|1|0.33|ENSG00000198216|chr1:181798455-181798455|G/A|missense_variant	CACNA1E|p.G2188E|1|0.33|ENSG00000198216|chr1:181798455-181798455|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	408.2996520996094	2	408.192708	814.370863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.035	1	28.714	28.214	29.214	0.67857								0	0	0	0.16876	1	9644	9644		7.9102	0	1				48624	277	35347	35633	47530	47530					-0.04374749052908555
SISQAQRATL	10	Unmodified	_SISQAQRATL_					0	0	0		ENST00000356432.7_1_16:129505-133057:+|nuORF	ENST00000356432.7_1_16:129505-133057:+|nuORF	ENST00000356432.7_1_16:129505-133057:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	358.9485168457031	3	358.86825	1073.58292	0.12543	4.5013E-05	2.3361	0.00083834	2.4615	0.00088335	359.20271846333685	33.46	0.30556	33.46	33.342	33.648	0					8	5	2	0	0	0	0.91909	1	11006	11006		3.0723	0.57378	1	1879100			48625	10966	35348	35634	47531	47531					0.04907342357910238
SISRHELRW	9	Unmodified	_SISRHELRW_					0	0	0			REV__ENST00000479833.1_1_3:183855956-183859823:+|nuORF	REV__ENST00000479833.1_1_3:183855956-183859823:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	592.7206420898438	2	592.320171	1182.62579	0.014604	8.6501E-06	-0.18799	-0.00011135	-0.17338	-0.0001027	592.3200895529905	39.018	0.30505	39.018	38.882	39.187	0					8	5	2	0	0	0	0.69674	1	13331	13331		7.2892	1.9923	1	1749200	+		48626	25238	35349	35635	47532	47532					0.041781572060017425
SISRHELRW	9	Unmodified	_SISRHELRW_					0	0	0			REV__ENST00000479833.1_1_3:183855956-183859823:+|nuORF	REV__ENST00000479833.1_1_3:183855956-183859823:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	592.320171	1182.62579	0.014604	8.6501E-06	-0.18799	-0.00011135	-0.17338	-0.0001027	592.3200895529905	39.018	0.30505	39.018	38.882	39.187	0	0.12651	-0.00037591	NaN	7.2892	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1749200	+		48627	25238	35349	35635							0.041781572060017425
SISRHELRW	9	Unmodified	_SISRHELRW_					0	0	0			REV__ENST00000479833.1_1_3:183855956-183859823:+|nuORF	REV__ENST00000479833.1_1_3:183855956-183859823:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	592.320171	1182.62579	-0.78913	-0.00046742	0.42375	0.00025099	-0.36538	-0.00021642	592.3204206373961	37.991	0.36104	38.765	38.534	38.895	0.77451	-0.12651	0.00034878	NaN	7.2892	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1899300	+		48628	25238	35349	35635							0.041781572060017425
SISRQLLEI	9	Unmodified	_SISRQLLEI_					0	0	0		ENST00000256367.2_1_14:71138213-71138513:+|nuORF	ENST00000256367.2_1_14:71138213-71138513:+|nuORF	ENST00000256367.2_1_14:71138213-71138513:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	352.9485778808594	3	353.544996	1057.61316	-0.28099	-9.9341E-05	-0.079715	-2.8183E-05	-0.3607	-0.00012752	353.54497231078403	40.255	0.35551	41.03	40.777	41.133	0.77451					11	6	2	0	0	0	0.53748	1	14857	14857		17.443	0	1	1516800			48629	10237	35350	35636	47533	47533					0.0866570102307378
SISRRRMTL	9	Unmodified	_SISRRRMTL_					0	0	0			REV__ZNF462|p.H450R|1|0.63|ENSG00000148143|chr9:106925261-106925261|A/G|missense_variant	REV__ZNF462|p.H450R|1|0.63|ENSG00000148143|chr9:106925261-106925261|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	560.8616333007812	2	560.324399	1118.63425	-0.51544	-0.00028881	-0.91495	-0.00051267	-1.4304	-0.00080148	560.3236593118787	93.633	0.86409	94.377	93.702	94.566	0.74474					23	16	2	0	0	0	0.50702	1	35382	35382		25.399	0	1	1048300	+		48630	29042	35351	35637	47534	47534					0.07967387850953855
SISRRRRRWWT	11	Unmodified	_SISRRRRRWWT_					0	0	0			REV__ENSG00000154736|ENST00000284987|ADAMTS5	REV__ENSG00000154736|ENST00000284987|ADAMTS5	MULTI-SECPEP	A375_MHC_IP_R2	2	780.8425903320312	2	780.442549	1558.87055	-0.92407	-0.00072119	0.84177	0.00065696	-0.0823	-6.4231E-05	780.4435150363114	132.5	0.20558	132.69	132.56	132.76	0.18953					9	3	3	0	0	0	1.0008	1	52148	52148		1.3295	0.13619	1	6688200	+		48631	19893	35352	35638	47535	47535					0.11346455739612793
SISRVTSLL	9	Unmodified	_SISRVTSLL_					0	0	0		nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1;nc|ENSG00000185658|Q9NSI6-4|BRWD1;BRWD1|p.D556Vfs*9|1|0.14|ENSG00000185658|chr21:39264678-39264679|-/TCCA|frameshift_variant	nc|ENSG00000185658|Q9NSI6-3|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	MULTI-SECPEP	A375_MHC_IP_R1	1	488.1666564941406	2	488.295299	974.576045	-0.29173	-0.00014245	-1.0999	-0.00053709	-1.3917	-0.00067954	488.2944847270232	31.37	0.9655	31.37	31.059	32.024	0					29	18	3	0	0	0	0.67483	1	10162	10162		20.454	2.3186	1	1213100			48632	8681	35353	35639	47536	47536					0.08774029477331169
SISSTKSV	8	Unmodified	_SISSTKSV_					0	0	0			REV__ENSG00000187889|ENST00000343433|FYB2	REV__ENSG00000187889|ENST00000343433|FYB2	MULTI-MSMS	A375_MHC_IP_R2	2	405.1307067871094	2	404.724175	807.433798	0.22959	9.2919E-05	-0.47522	-0.00019233	-0.24564	-9.9415E-05	404.72397525616486	99.421	0.61167	100.18	99.909	100.52	0.75977					16	11	2	0	0	0	0.77028	2	37683	37683;37737		14.838	0	1	2406200	+		48633	22056	35354	35640	47537;47538	47537					0.022378167351462253
SISSTKSV	8	Unmodified	_SISSTKSV_					0	0	0			REV__ENSG00000187889|ENST00000343433|FYB2	REV__ENSG00000187889|ENST00000343433|FYB2	MULTI-SECPEP	A375_MHC_IP_R2	2	405.1307067871094	2	404.724175	807.433798	0.22959	9.2919E-05	-0.47522	-0.00019233	-0.24564	-9.9415E-05	404.72397525616486	99.421	0.61167	100.18	99.909	100.52	0.75977					16	11	2	0	0	0	0.94587	1	37683	37683		14.838	0	1	2406200	+		48634	22056	35354	35640	47539	47539					0.022378167351462253
SISTMLPPV	9	Unmodified	_SISTMLPPV_					0	0	0		nc|ENSG00000133863|Q9BXT5|TEX15;ENSG00000133863|ENST00000643185|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	MULTI-SECPEP	A375_MHC_IP_R2	2	472.1659851074219	2	472.759704	943.504854	-0.64565	-0.00030524	-2.0854	-0.00098587	-2.731	-0.0012911	472.75893969553374	55.461	0.30426	56.212	56.135	56.439	0.75075					8	5	2	0	0	0	0.60012	1	20927	20927		12.532	0	1	1305800			48635	4534	35355	35641	47540	47540					0.03084193448296446
SISVGEFY	8	Unmodified	_SISVGEFY_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.E2519Dfs*5|1|0.21|ENSG00000188906|chr12:40367737-40367738|-/CTTAG|frameshift_variant	ENSG00000188906|ENST00000298910|LRRK2	ENSG00000188906|ENST00000298910|LRRK2	MSMS	A375_MHC_IP_R1	1	451.1669616699219	2	451.218726	900.422899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.583	1	38.583	38.083	39.083	0								0	0	0	0.16876	1	13104	13104		14.582	0	1				48636	8945	35356	35642	47541	47541					-0.03129585639146626
SISVNKLFVR	10	Unmodified	_SISVNKLFVR_					0	0	0		nc|ENSG00000126838|P20742-2|PZP;ENSG00000126838|ENST00000261336|PZP	nc|ENSG00000126838|P20742-2|PZP	nc|ENSG00000126838|P20742-2|PZP	MULTI-SECPEP	A375_MHC_IP_R1	1	387.62060546875	3	388.236274	1161.68699	0.27112	0.00010526	-0.68566	-0.0002662	-0.41453	-0.00016094	388.2358853617733	43.584	0.30591	43.584	43.451	43.757	0					8	5	2	0	0	0	0.92603	1	15213	15213		8.9762	3.1928	1	653050			48637	4063	35357	35643	47542	47542					0.11261669185410028
SISWQSPPVTF	11	Unmodified	_SISWQSPPVTF_					0	0	0		ENSG00000164684|ENST00000327835|ZNF704	ENSG00000164684|ENST00000327835|ZNF704	ENSG00000164684|ENST00000327835|ZNF704	MULTI-SECPEP	A375_MHC_IP_R1	1	625.2151489257812	2	624.816596	1247.61864	-0.68725	-0.0004294	-0.68231	-0.00042632	-1.3696	-0.00085572	624.8160032198494	80.692	0.81111	80.692	80.086	80.897	0					25	15	3	0	0	0	0.92455	1	29483	29483		7.609	0	1	2464700			48638	6865	35358	35644	47543	47543					0.004733798148890855
SITAAVPEV	9	Unmodified	_SITAAVPEV_					0	0	0			REV__nc|ENSG00000158711|P28324-2|ELK4	REV__nc|ENSG00000158711|P28324-2|ELK4	MSMS	A375_MHC_IP_R1	1	443.6499938964844	2	443.74765	885.480748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.817	1	86.817	86.317	87.317	0								0	0	0	0.14359	1	31843	31843		28.487	5.3384	1		+		48639	20088	35359	35645	47544	47544					0.033426762862859505
SITAAVPEV	9	Unmodified	_SITAAVPEV_					0	0	0			REV__nc|ENSG00000158711|P28324-2|ELK4	REV__nc|ENSG00000158711|P28324-2|ELK4	MSMS	A375_MHC_IP_R2	2	443.649658203125	2	443.74765	885.480748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.989	1	86.722	86.222	87.222	0.733								0	0	0	0.15411	1	32701	32701		14.838	0.25658	1		+		48640	20088	35359	35645	47545	47545					0.033426762862859505
SITAAVPEV	9	Unmodified	_SITAAVPEV_					0	0	0			REV__nc|ENSG00000158711|P28324-2|ELK4	REV__nc|ENSG00000158711|P28324-2|ELK4	MSMS	A375_MHC_IP_R2	2	443.64996337890625	2	443.74765	885.480748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.041	1	86.774	86.274	87.274	0.733								0	0	0	0.15069	1	32720	32720		20.454	4.6064	1		+		48641	20088	35359	35645	47546	47546					0.033426762862859505
SITAVTPLL	9	Unmodified	_SITAVTPLL_					0	0	0		nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9;nc|ENSG00000101194|Q9BYT1-3|SLC17A9;ENST00000488738.5_1_20:61584086-61594126:+|nuORF	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MULTI-MSMS	A375_MHC_IP_R1	1	914.3929443359375	1	914.55571	913.548434	0.27926	0.0002554	-0.17193	-0.00015724	0.10733	9.816E-05	914.5558137627012	112.96	0.35264	112.96	112.74	113.09	0					11	6	2	0	0	0	0.0098409	1	41403	41403		115.69	22.87	1	1398900			48642	2270	35360	35646	47547	47547					0.08820126217108282
SITAVTPLL	9	Unmodified	_SITAVTPLL_					0	0	0		nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9;nc|ENSG00000101194|Q9BYT1-3|SLC17A9;ENST00000488738.5_1_20:61584086-61594126:+|nuORF	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MULTI-MATCH	A375_MHC_IP_R2	2		1	914.55571	913.548434	-0.15472	-0.0001415	-0.90943	-0.00083172	-1.0641	-0.00097322	914.5556738032394	111.99	0.35831	112.72	112.56	112.92	0.72459	-0.12077	-0.0005557	NaN	115.69	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1873200			48643	2270	35360	35646							0.08820126217108282
SITDVYLLNL	10	Unmodified	_SITDVYLLNL_					0	0	0		ENSG00000179934|ENST00000326306|CCR8	ENSG00000179934|ENST00000326306|CCR8	ENSG00000179934|ENST00000326306|CCR8	MULTI-SECPEP	A375_MHC_IP_R2	2	575.664794921875	2	575.821347	1149.62814	-0.090826	-5.23E-05	2.7059	0.0015581	2.6151	0.0015058	575.8209878377374	89.905	0.56236	90.637	90.391	90.953	0.7318					12	10	2	0	0	0	0.85226	1	34181	34181		6.2058	0	1	1302000			48644	8267	35361	35647	47548	47548					0.05931148100444261
SITGVRVCMLL	11	Unmodified	_SITGVRVCMLL_					0	0	0			REV__ENST00000270776.12_1_1:10480016-10480181:+|nuORF	REV__ENST00000270776.12_1_1:10480016-10480181:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	596.73193359375	2	596.333044	1190.65154	-0.62356	-0.00037185	-0.91095	-0.00054323	-1.5345	-0.00091508	596.3323979323419	128.76	1.7251	129	127.99	129.72	0.23946					62	33	2	0	0	0	0.73078	1	50544	50544		8.1555	2.4237	1	8151000	+		48645	23273	35362	35648	47549	47549					0.06383547341761187
SITIDHLRRK	10	Unmodified	_SITIDHLRRK_					0	0	0		CCDC158|p.E420K|1|0.36|ENSG00000163749|chr4:76369515-76369515|C/T|missense_variant	CCDC158|p.E420K|1|0.36|ENSG00000163749|chr4:76369515-76369515|C/T|missense_variant	CCDC158|p.E420K|1|0.36|ENSG00000163749|chr4:76369515-76369515|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	620.26953125	2	619.870028	1237.7255	-0.24878	-0.00015421	-0.9214	-0.00057115	-1.1702	-0.00072536	619.8693996633185	128.26	0.55623	128.26	127.87	128.43	0					29	10	4	0	0	0	0.94227	1	49202	49202		2.7352	0.23671	1	41985000			48646	309	35363	35649	47550	47550					0.11614974819917734
SITILGALLV	10	Unmodified	_SITILGALLV_					0	0	0			REV__tr|U7SUG0|U7SUG0_FUSNULipopolysaccharideexportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01410PE=4SV=1	REV__tr|U7SUG0|U7SUG0_FUSNULipopolysaccharideexportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01410PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	500.72552490234375	2	500.326068	998.637583	-0.47588	-0.00023809	-0.4765	-0.00023841	-0.95238	-0.0004765	500.3256994430108	134.14	0.25818	134.3	134.15	134.41	0.15556					7	4	2	0	0	0	0.14594	1	52796	52796		54.774	10.915	1	3049100	+		48647	28554	35364	35650	47551	47551					0.1382096117662286
SITIRASSQL	10	Unmodified	_SITIRASSQL_					0	0	0			REV__ENST00000497390.5_1_3:51992079-51994784:-|nuORF	REV__ENST00000497390.5_1_3:51992079-51994784:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	538.7079467773438	2	538.308938	1074.60332	-0.91383	-0.00049192	0.30978	0.00016676	-0.60405	-0.00032516	538.3090247293388	127.76	1.119	128.02	127.61	128.73	0.26592					53	21	3	0	0	0	0.70651	1	50358	50358		9.3831	4.1525	1	12577000	+		48648	25416	35365	35651	47552	47552					0.06900513017717458
SITIRASSQL	10	Unmodified	_SITIRASSQL_					0	0	0			REV__ENST00000497390.5_1_3:51992079-51994784:-|nuORF	REV__ENST00000497390.5_1_3:51992079-51994784:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	538.308938	1074.60332	-0.47759	-0.00025709	-0.55622	-0.00029942	-1.0338	-0.00055651	538.3085041146992	127.95	1.0109	127.95	127.62	128.63	0	-0.036812	-0.00070616	NaN	9.3831	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26995000	+		48649	25416	35365	35651							0.06900513017717458
SITIVDKRSE	10	Unmodified	_SITIVDKRSE_					0	0	0			REV__ENSG00000124177|ENST00000373233|CHD6	REV__ENSG00000124177|ENST00000373233|CHD6	MULTI-MSMS	A375_MHC_IP_R2	2	574.718994140625	2	574.319502	1146.62445	-0.26893	-0.00015445	-0.18783	-0.00010788	-0.45676	-0.00026233	574.319255677207	129	2.4323	129.24	128.04	130.48	0.23947					111	47	4	0	0	0	0.72061	1	50778	50778		5.7319	5.7319	1	17950000	+		48650	18278	35366	35652	47553	47553					0.05700478326571101
SITIVDKRSE	10	Unmodified	_SITIVDKRSE_					0	0	0			REV__ENSG00000124177|ENST00000373233|CHD6	REV__ENSG00000124177|ENST00000373233|CHD6	MULTI-SECPEP	A375_MHC_IP_R2	2	574.718994140625	2	574.319502	1146.62445	-0.26893	-0.00015445	-0.18783	-0.00010788	-0.45676	-0.00026233	574.319255677207	129	2.4323	129.24	128.04	130.48	0.23947					111	47	4	0	0	0	0.94102	1	50778	50778		5.7319	5.7319	1	17950000	+		48651	18278	35366	35652	47554	47554					0.05700478326571101
SITKKMPEWVL	11	Unmodified	_SITKKMPEWVL_					0	0	0		nc|ENSG00000089876|Q7L7V1-2|DHX32;ENSG00000089876|ENST00000284690|DHX32	nc|ENSG00000089876|Q7L7V1-2|DHX32	nc|ENSG00000089876|Q7L7V1-2|DHX32	MSMS	A375_MHC_IP_R1	1	444.6815490722656	3	444.584574	1330.73189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.996	1	45.996	45.496	46.496	0								0	0	0	0.16108	1	16119	16119		10.315	4.0809	1				48652	1938	35367	35653	47555	47555					0.079757319364262
SITKQTEGNI	10	Unmodified	_SITKQTEGNI_					0	0	0			REV__ENSG00000112249|ENST00000369162|ASCC3	REV__ENSG00000112249|ENST00000369162|ASCC3	MULTI-SECPEP	A375_MHC_IP_R2	2	364.94512939453125	3	364.196144	1089.5666	-0.38317	-0.00013955	1.3518	0.00049231	0.96861	0.00035276	364.1965081671891	24.529	0.35424	25.173	25.06	25.414	0.64368					9	6	2	0	0	0	0.91909	1	8043	8043		5.4027	0	1	3236800	+		48653	17721	35368	35654	47556	47556					0.0254021640114388
SITKVSVVE	9	Unmodified	_SITKVSVVE_					0	0	0		nc|ENSG00000152404|Q2TBE0-3|CWF19L2;nc|ENSG00000152404|Q2TBE0-2|CWF19L2;ENSG00000152404|ENST00000282251|CWF19L2	nc|ENSG00000152404|Q2TBE0-3|CWF19L2	nc|ENSG00000152404|Q2TBE0-3|CWF19L2	MULTI-SECPEP	A375_MHC_IP_R2	2	481.1533203125	2	481.281857	960.549162	-0.69682	-0.00033537	0.22076	0.00010625	-0.47606	-0.00022912	481.2817671847186	44.706	0.50949	45.475	45.188	45.698	0.76909					18	9	3	0	0	0	0.63327	1	16646	16646		18.146	0	1	2492700			48654	14684	35369	35655	47557	47557					0.06730920866152701
SITLTSQDW	9	Unmodified	_SITLTSQDW_					0	0	0		ENST00000481758.1_1_1:154965104-154965510:+|nuORF	ENST00000481758.1_1_1:154965104-154965510:+|nuORF	ENST00000481758.1_1_1:154965104-154965510:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	525.709716796875	2	525.758746	1049.50294	-0.47826	-0.00025145	-0.43829	-0.00023043	-0.91655	-0.00048188	525.7584036538559	99.116	0.60928	99.116	98.813	99.422	0					29	11	3	0	0	0	0.6898	1	36511	36511		7.9102	0	1	3955100			48655	12518	35370	35656	47558	47558					-0.019831440359666885
SITPFHRM	8	Unmodified	_SITPFHRM_					0	0	0			REV__ENSG00000108950|ENST00000592554|FAM20A	REV__ENSG00000108950|ENST00000592554|FAM20A	MULTI-SECPEP	A375_MHC_IP_R1	1	494.6531982421875	2	494.755287	987.496021	-0.69379	-0.00034326	0.93931	0.00046473	0.24552	0.00012147	494.7553833726555	30.606	0.30355	30.606	30.503	30.806	0					8	5	3	0	0	0	0.8824	1	9755	9755		23.148	9.6405	1	1706200	+		48656	17564	35371	35657	47559	47559					0.0017726460249605225
SITPHPRNL	9	Unmodified	_SITPHPRNL_					0	0	0			REV__ENSG00000171587|ENST00000400454|DSCAM	REV__ENSG00000171587|ENST00000400454|DSCAM	MULTI-SECPEP	A375_MHC_IP_R2	2	517.6734008789062	2	517.790715	1033.56688	-1.17	-0.00060581	-1.0826	-0.00056055	-2.2526	-0.0011664	517.7902269567082	52.501	0.35382	53.253	53.032	53.386	0.75225					9	6	2	0	0	0	0.39388	1	19768	19768		25.399	0	1	3395000	+		48657	21080	35372	35658	47560	47560					0.051436809116466975
SITQAGVQW	9	Unmodified	_SITQAGVQW_					0	0	0		ENST00000576713.6_1_17:79534551-79539120:-|nuORF	ENST00000576713.6_1_17:79534551-79539120:-|nuORF	ENST00000576713.6_1_17:79534551-79539120:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	495.1744079589844	2	495.256174	988.497795	-0.61556	-0.00030486	0.24199	0.00011985	-0.37357	-0.00018502	495.25620610752696	32.668	0.60597	32.668	32.383	32.989	0					25	11	3	0	0	0	0.63811	1	10498	10498		12.532	0.89125	1	4704600			48658	13640	35373	35659	47561	47561					0.0030859689210274155
SITRDSYDE	9	Unmodified	_SITRDSYDE_					0	0	0			REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3	REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3	MULTI-MSMS	A375_MHC_IP_R2	2	543.6405029296875	2	543.240918	1084.46728	-0.80543	-0.00043754	0.35546	0.0001931	-0.44997	-0.00024444	543.2409398822066	27.634	0.60769	28.313	28.098	28.706	0.67857					29	11	3	0	0	0	0.29123	1	9464	9464		31.268	1.4278	1	20358000	+		48659	19554	35374	35660	47562	47562					-0.07157226283607088
SITRDSYDE	9	Unmodified	_SITRDSYDE_					0	0	0			REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3	REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	543.240918	1084.46728	-0.65543	-0.00035606	0.10022	5.4445E-05	-0.55521	-0.00030161	543.2408147548384	28.243	0.75804	28.243	27.987	28.745	0	-0.035076	-0.0001364	NaN	31.268	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23358000	+		48660	19554	35374	35660							-0.07157226283607088
SITRDSYDE	9	Unmodified	_SITRDSYDE_					0	0	0			REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3	REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	543.240918	1084.46728	-0.80543	-0.00043754	0.35546	0.0001931	-0.44997	-0.00024444	543.2409398822066	27.634	0.60769	28.313	28.098	28.706	0.67857	0.035076	0.00014091	NaN	31.268	29	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20358000	+		48661	19554	35374	35660							-0.07157226283607088
SITSELHAV	9	Unmodified	_SITSELHAV_					0	0	0		ENSG00000004700|ENST00000444129|RECQL;RECQL|p.F133Lfs*8|1|0.26|ENSG00000004700|chr12:21486581-21486581|A/-|frameshift_variant	ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	MULTI-SECPEP	A375_MHC_IP_R1	1	479.15594482421875	2	478.756007	955.497461	-0.29857	-0.00014294	0.30308	0.0001451	0.0045139	2.161E-06	478.7560846647524	53.835	0.7083	53.835	53.555	54.263	0					35	13	3	0	0	0	0.089948	1	19175	19175		60.39	14.369	1	19454000			48662	868	35375	35661	47563	47563					0.01793177172248761
SITSELHAV	9	Unmodified	_SITSELHAV_					0	0	0		ENSG00000004700|ENST00000444129|RECQL;RECQL|p.F133Lfs*8|1|0.26|ENSG00000004700|chr12:21486581-21486581|A/-|frameshift_variant	ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	MULTI-MSMS	A375_MHC_IP_R2	2	479.4641418457031	2	478.756007	955.497461	-1.0936	-0.00052355	0.1962	9.393E-05	-0.89737	-0.00042962	478.7560253078268	52.963	1.1204	53.714	53.385	54.505	0.75105					31	21	2	0	0	0	0.2264	1	20057	20057		36.044	0	1	21926000			48663	868	35375	35661	47564	47564					0.01793177172248761
SITSWNQGI	9	Unmodified	_SITSWNQGI_					0	0	0			REV__nc|ENSG809|P63128|ERVK-9_pol;REV__nc|ENSG841|P62683|ERVK-21_gag	REV__nc|ENSG809|P63128|ERVK-9_pol	MULTI-SECPEP	A375_MHC_IP_R2	2	503.6531677246094	2	503.253631	1004.49271	-0.66561	-0.00033497	0.17092	8.6017E-05	-0.49469	-0.00024895	503.2538424299664	30.504	0.75671	31.222	31.013	31.77	0.71857					21	14	2	0	0	0	0.63327	1	10794	10794		24.021	24.021	1	2193900	+		48664	27569;27573	35376	35662	47565	47565					-0.009357069705288268
SITTELRSVK	10	Unmodified	_SITTELRSVK_					0	0	0			REV__ENSG00000115353|ENST00000305249|TACR1	REV__ENSG00000115353|ENST00000305249|TACR1	MULTI-MSMS	A375_MHC_IP_R2	2	567.7300415039062	2	567.32987	1132.64519	-0.41842	-0.00023738	0.077	4.3684E-05	-0.34142	-0.0001937	567.3297747318176	127.56	2.8885	127.82	126.96	129.84	0.26593					253	56	6	0	0	0	0.72321	1	50322	50322		1.6526	0	1	764130000	+		48665	17876	35377	35663	47566	47566					0.08417068706239661
SITTESLKVR	10	Unmodified	_SITTESLKVR_					0	0	0		ENST00000556052.1_1_14:23533533-23533737:-|nuORF	ENST00000556052.1_1_14:23533533-23533737:-|nuORF	ENST00000556052.1_1_14:23533533-23533737:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	568.0631103515625	2	567.32987	1132.64519	-0.27045	-0.00015343	-0.73389	-0.00041636	-1.0043	-0.0005698	567.3293136969052	134.6	0.60628	134.74	134.49	135.1	0.13901					17	11	2	0	0	0	0.94516	1	53062	53062		1.4819	1.4819	1	1976400			48666	13438	35378	35664	47567	47567					0.08417068706239661
SITTLPDLT	9	Unmodified	_SITTLPDLT_					0	0	0		ENSG00000133028|ENST00000255390|SCO1;SCO1|p.P198A|1|0.3|ENSG00000133028|chr17:10691935-10691935|G/C|missense_variant	ENSG00000133028|ENST00000255390|SCO1	ENSG00000133028|ENST00000255390|SCO1	MULTI-SECPEP	A375_MHC_IP_R1	1	480.1816711425781	2	480.76604	959.517527	-0.10817	-5.2004E-05	0.82439	0.00039634	0.71622	0.00034433	480.76639578582717	48.096	0.45524	48.096	47.87	48.325	0					15	8	3	0	0	0	0.3607	1	16993	16993		34.102	5.6156	1	1685100			48667	4475	35379	35665	47568	47568					0.03614928112176585
SITTMLALAL	10	Unmodified	_SITTMLALAL_					0	0	0		NUGGC|p.S737L|1|0.38|ENSG00000189233|chr8:28026997-28026997|G/A|missense_variant	NUGGC|p.S737L|1|0.38|ENSG00000189233|chr8:28026997-28026997|G/A|missense_variant	NUGGC|p.S737L|1|0.38|ENSG00000189233|chr8:28026997-28026997|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	517.6992797851562	2	517.301736	1032.58892	-0.58603	-0.00030316	-2.3127	-0.0011964	-2.8987	-0.0014995	517.300019457367	110.24	0.56239	110.97	110.78	111.34	0.73691					18	10	3	0	0	0	0.21466	1	41608	41608		47.749	3.8904	1	1903900			48668	15035	35380	35666	47569	47569					0.07392724545184137
SITTWLSSP	9	Unmodified	_SITTWLSSP_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-SECPEP	A375_MHC_IP_R2	2	495.656005859375	2	496.258382	990.502212	-0.6692	-0.0003321	-3.4757	-0.0017248	-4.1449	-0.0020569	496.2567117541428	49.313	1.0669	50.071	49.18	50.247	0.75737					28	20	2	0	0	0	0.24548	1	18312	18312		43.858	2.0187	1	3014200	+		48669	18742	35381	35667	47570	47570					0.006580613150163117
SIVAAIEKEW	10	Unmodified	_SIVAAIEKEW_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	A375_MHC_IP_R1	1	382.9448547363281	3	382.544885	1144.61282	0.36817	0.00014084	-0.34452	-0.00013179	0.02365	9.0472E-06	382.5447334329259	46.119	0.50499	46.119	45.89	46.395	0					19	9	3	0	0	0	0.77998	1	16184	16184		23.801	4.4391	1	4823700	+		48670	21249	35382	35668	47571	47571					0.046302813032070844
SIVAAIEKEW	10	Unmodified	_SIVAAIEKEW_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	A375_MHC_IP_R2	2	382.9449768066406	3	382.544885	1144.61282	-0.16997	-6.5022E-05	0.24431	9.3461E-05	0.074342	2.8439E-05	382.54492929033773	45.221	0.50749	45.986	45.694	46.201	0.76519					22	9	3	0	0	0	0.60589	1	16902	16902		29.437	11.995	1	5160800	+		48671	21249	35382	35668	47572	47572					0.046302813032070844
SIVAPLLLRN	10	Unmodified	_SIVAPLLLRN_					0	0	0		ENST00000471540.5_1_21:46697685-46703407:-|nuORF;nc|ENSG00000186866|Q9Y2G5-2|POFUT2;nc|ENSG00000186866|Q9Y2G5-1|POFUT2;ENSG00000186866|ENST00000349485|POFUT2	ENST00000471540.5_1_21:46697685-46703407:-|nuORF	ENST00000471540.5_1_21:46697685-46703407:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	548.4158325195312	2	548.347866	1094.68118	-0.59504	-0.00032629	0.13392	7.3436E-05	-0.46111	-0.00025285	548.3478952180135	149.77	2.5221	149.79	147.49	150.01	0.018265					272	111	4	0	0	0	0.72607	1	57765	57765		1.4819	1.1749	1	1619800			48672	8784	35383	35669	47573	47573					0.13762570673748087
SIVDKLKLI	9	Unmodified	_SIVDKLKLI_					0	0	0			REV__tr|U7T4V2|U7T4V2_FUSNUGuanosine-3',5'-bis(Diphosphate)3'-pyrophosphohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00568PE=3SV=1	REV__tr|U7T4V2|U7T4V2_FUSNUGuanosine-3',5'-bis(Diphosphate)3'-pyrophosphohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00568PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	514.9248046875	2	514.839342	1027.66413	-0.55105	-0.0002837	-0.050824	-2.6166E-05	-0.60187	-0.00030987	514.8393296258208	59.117	0.35684	59.117	58.938	59.295	0					11	6	2	0	0	0	0.6656	1	21229	21229		10.074	0	1	2130100	+		48673	28805	35384	35670	47574	47574					0.15140650067951356
SIVDTKRRVP	10	Unmodified	_SIVDTKRRVP_					0	0	0			REV__ENSG00000197077|ENST00000358431|KIAA1671	REV__ENSG00000197077|ENST00000358431|KIAA1671	MSMS	A375_MHC_IP_R2	2	586.17138671875	2	585.851304	1169.68806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.08	1	113.79	113.29	114.29	0.70985								0	0	0	0.15451	1	42635	42635		6.2058	0.47393	1		+		48674	22251	35385	35671	47575	47575					0.1099988355433652
SIVEKGWTDGV	11	Unmodified	_SIVEKGWTDGV_					0	0	0			REV__ENSG00000104774|ENST00000456935|MAN2B1	REV__ENSG00000104774|ENST00000456935|MAN2B1	MULTI-MSMS	A375_MHC_IP_R1	1	397.9398498535156	3	397.539911	1189.5979	-0.11976	-4.7609E-05	-0.014105	-5.6075E-06	-0.13387	-5.3217E-05	397.53991476720125	33.496	0.40693	33.496	33.291	33.698	0					16	7	3	0	0	0	0.72728	1	10964	10964		9.2438	3.3756	1	3122000	+		48675	17337	35386	35672	47576	47576					0.010687894352031435
SIVEKGWTDGV	11	Unmodified	_SIVEKGWTDGV_					0	0	0			REV__ENSG00000104774|ENST00000456935|MAN2B1	REV__ENSG00000104774|ENST00000456935|MAN2B1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	397.539911	1189.5979	-0.11976	-4.7609E-05	-0.014105	-5.6075E-06	-0.13387	-5.3217E-05	397.53991476720125	33.496	0.40693	33.496	33.291	33.698	0	0.052302	-0.00010682	NaN	9.2438	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3122000	+		48676	17337	35386	35672							0.010687894352031435
SIVEQRSCK	9	Unmodified	_SIVEQRSCK_					0	0	0			REV__ENSG00000145721|ENST00000274382|LIX1	REV__ENSG00000145721|ENST00000274382|LIX1	MULTI-SECPEP	A375_MHC_IP_R2	2	525.697509765625	2	525.274041	1048.53353	-0.31238	-0.00016409	0.26722	0.00014037	-0.045156	-2.3719E-05	525.2742671553428	115.85	0.35686	116.54	116.34	116.7	0.68999					13	6	3	0	0	0	0.58271	1	43729	43729		20.454	13.164	1	2670100	+		48677	19487	35387	35673	47577	47577					0.01120311077443148
SIVISDVLP	9	Unmodified	_SIVISDVLP_					0	0	0		nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;ENST00000377259.5_2_9:71766567-71833305:+|nuORF	nc|ENSG00000119139|Q9UDY2-6|TJP2	nc|ENSG00000119139|Q9UDY2-6|TJP2	MULTI-MSMS	A375_MHC_IP_R2	2	946.75439453125	1	942.550625	941.543348	-0.052785	-4.9753E-05	-0.099488	-9.3772E-05	-0.15227	-0.00014353	942.5504592111624	116.59	1.2686	117.25	116.92	118.19	0.65961					75	24	5	0	0	0	0.4867	1	44165	44165		20.454	3.5113	1	542870000			48678	14565	35388	35674	47578	47578					0.07023822354460663
SIVKLLKLVKK	11	Unmodified	_SIVKLLKLVKK_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MSMS	A375_MHC_IP_R2	2	635.142333984375	2	634.955041	1267.89553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.04	1	106.8	106.3	107.3	0.75977								0	0	0	0.16354	1	40091	40091		0.30703	0.30703	1				48679	8255	35389	35675	47579	47579					0.2722969776964419
SIVLHAEEPY	10	Unmodified	_SIVLHAEEPY_					0	0	0		ENSG00000258484|ENST00000310673|SPESP1	ENSG00000258484|ENST00000310673|SPESP1	ENSG00000258484|ENST00000310673|SPESP1	MULTI-SECPEP	A375_MHC_IP_R1	1	578.6788940429688	2	579.295496	1156.57644	-0.19717	-0.00011422	-0.31864	-0.00018459	-0.51581	-0.0002988	579.2952586862411	99.161	0.50808	99.161	98.914	99.422	0					20	9	3	0	0	0	0.78945	1	36501	36501		25.399	4.9848	1	4462700			48680	9919	35390	35676	47580	47580					0.004414044065015332
SIVLNQRSHKV	11	Unmodified	_SIVLNQRSHKV_					0	0	0			REV__ENST00000538466.5_1_6:111982658-111982799:-|nuORF	REV__ENST00000538466.5_1_6:111982658-111982799:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	640.759033203125	2	640.875311	1279.73607	-0.71742	-0.00045978	-0.36142	-0.00023163	-1.0788	-0.00069141	640.874956156036	131.53	0.9642	131.72	131.34	132.3	0.18953					33	18	2	0	0	0	0.99955	1	51770	51770		1.1933	0	1	13628000	+		48681	25935	35391	35677	47581	47581					0.10738957474359268
SIVNENRMY	9	Unmodified	_SIVNENRMY_					0	0	0			REV__ENSG00000177294|ENST00000321535|FBXO39	REV__ENSG00000177294|ENST00000321535|FBXO39	MULTI-SECPEP	A375_MHC_IP_R2	2	563.6837158203125	2	563.271498	1124.52844	-0.62888	-0.00035423	4.307	0.002426	3.6782	0.0020718	563.2736013702653	66.709	0.45883	67.445	67.24	67.698	0.73631					10	7	2	0	0	0	0.74412	1	25357	25357		10.074	0.6908	1	909290	+		48682	21450	35392	35678	47582	47582					-0.028839927851549874
SIVNFDKDL	9	Unmodified	_SIVNFDKDL_					0	0	0			REV__tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	REV__tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	MSMS	A375_MHC_IP_R1	1	525.7757568359375	2	525.776939	1049.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.11	1	129.11	128.61	129.61	0								0	0	0	0.15486	1	49618	49618		11.64	0.81637	1		+		48683	28760	35393	35679	47583	47583					0.016537328607682866
SIVNFDKDL	9	Unmodified	_SIVNFDKDL_					0	0	0			REV__tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	REV__tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	525.1727905273438	2	525.776939	1049.53933	-0.84611	-0.00044487	-0.36946	-0.00019425	-1.2156	-0.00063912	525.7765614083642	58.908	0.55833	59.656	59.235	59.793	0.74714					9	6	2	0	0	0	0.63327	1	22252	22252		18.146	1.0335	1	2096000	+		48684	28760	35393	35679	47584	47584					0.016537328607682866
SIVNFSQDPD	10	Unmodified	_SIVNFSQDPD_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	A375_MHC_IP_R2	2	374.90838623046875	3	374.508499	1120.50367	0.063702	2.3857E-05	-0.066234	-2.4805E-05	-0.0025315	-9.4806E-07	374.50845118581293	23.647	0.20365	24.277	24.18	24.384	0.63014					5	3	2	0	0	0	0.71245	1	7682	7682		3.5871	0.95582	1	1818200			48685	5230;1491	35394	35680	47585	47585					-0.051763493868975274
SIVNHTKQDRY	11	Unmodified	_SIVNHTKQDRY_					0	0	0		nc|ENSG00000160293|P52735-3|VAV2;nc|ENSG00000160293|P52735-2|VAV2;ENSG00000160293|ENST00000371850|VAV2	nc|ENSG00000160293|P52735-3|VAV2	nc|ENSG00000160293|P52735-3|VAV2	MULTI-MSMS	A375_MHC_IP_R1	1	454.6365051269531	3	454.237114	1359.68951	-0.35031	-0.00015912	-0.24779	-0.00011256	-0.5981	-0.00027168	454.23689836872796	36.313	0.40567	36.313	36.084	36.489	0					15	7	3	0	0	0	0.73239	1	12181	12181		6.6235	1.9075	1	3891200			48686	6413	35395	35681	47586	47586					0.024054728524106395
SIVQKTPL	8	Unmodified	_SIVQKTPL_					0	0	0		ENSG00000001626|ENST00000003084|CFTR;nc|ENSG00000001626|P13569-2|CFTR	ENSG00000001626|ENST00000003084|CFTR	ENSG00000001626|ENST00000003084|CFTR	MULTI-SECPEP	A375_MHC_IP_R1	1	442.6895446777344	2	443.273835	884.533118	0.020656	9.1564E-06	0.28052	0.00012435	0.30118	0.0001335	443.2738217274705	50.075	0.3589	50.075	49.845	50.204	0					11	6	2	0	0	0	0.90775	1	17677	17677		14.838	0	1	1434000			48687	848	35396	35682	47587	47587					0.08623259419891838
SIVQLDYSQ	9	Unmodified	_SIVQLDYSQ_					0	0	0		ENSG00000196663|ENST00000359520|TECPR2;nc|ENSG00000196663|O15040-2|TECPR2;ENST00000561228.1_1_14:102843052-102891354:+|nuORF	ENSG00000196663|ENST00000359520|TECPR2	ENSG00000196663|ENST00000359520|TECPR2	MSMS	A375_MHC_IP_R1	1	526.6637573242188	2	526.766571	1051.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.516	1	48.516	48.016	49.016	0								0	0	0	0.14714	1	17120	17120		26.268	0	1				48688	9072	35397	35683	47588	47588					-0.005108575189296971
SIVRTAQH	8	Unmodified	_SIVRTAQH_					0	0	0			REV__nc|ENSG00000132849|Q8NI35-4|PATJ	REV__nc|ENSG00000132849|Q8NI35-4|PATJ	MULTI-MSMS	A375_MHC_IP_R1	1	456.6568298339844	2	456.256508	910.498464	0.21676	9.8897E-05	-0.076477	-3.4893E-05	0.14028	6.4004E-05	456.25641195920525	114.31	2.9993	114.31	113.29	116.29	0					132	58	3	0	0	0	0.7773	2	42245	41825;42245		4.756	0.42677	1	35965000	+		48689	18687	35398	35684	47589;47590	47590					0.03963436331787307
SIVRTAQH	8	Unmodified	_SIVRTAQH_					0	0	0			REV__nc|ENSG00000132849|Q8NI35-4|PATJ	REV__nc|ENSG00000132849|Q8NI35-4|PATJ	MULTI-MSMS	A375_MHC_IP_R1	1	456.6559143066406	2	456.256508	910.498464	0.02086	9.5177E-06	0.013011	5.9365E-06	0.033872	1.5454E-05	456.25640721189586	117.06	1.6747	117.06	116.24	117.92	0					44	32	2	0	0	0	0.7773	1	42894	42894		4.756	0.42677	1	10394000	+		48690	18687	35398	35684	47591	47591					0.03963436331787307
SIVRTAQH	8	Unmodified	_SIVRTAQH_					0	0	0			REV__nc|ENSG00000132849|Q8NI35-4|PATJ	REV__nc|ENSG00000132849|Q8NI35-4|PATJ	MULTI-MSMS	A375_MHC_IP_R2	2	456.6559753417969	2	456.256508	910.498464	-0.040184	-1.8334E-05	-0.12445	-5.6781E-05	-0.16463	-7.5115E-05	456.2563881595968	113.64	3.0478	114.35	113.46	116.51	0.70985					137	59	4	0	0	0	0.7766	3	43081	42659;42868;43081		7.2892	0.56607	1	31151000	+		48691	18687	35398	35684	47592;47593;47594	47594					0.03963436331787307
SIVSSLRLI	9	Unmodified	_SIVSSLRLI_					0	0	0		chr12:89459718-89461004|188|21.05|0.16|7.04|-|1|POC1B,None|1	chr12:89459718-89461004|188|21.05|0.16|7.04|-|1|POC1B,None|1	chr12:89459718-89461004|188|21.05|0.16|7.04|-|1|POC1B,None|1	MULTI-SECPEP	A375_MHC_IP_R1	1	494.6768798828125	2	494.313492	986.612431	-0.39107	-0.00019331	0.042834	2.1173E-05	-0.34823	-0.00017214	494.3133330203334	87.619	0.35741	87.619	87.441	87.798	0					11	6	2	0	0	0	0.65246	1	32217	32217		15.847	15.847	1	1228100			48692	421	35399	35685	47595	47595					0.11858906374038725
SIVSSLRLI	9	Unmodified	_SIVSSLRLI_					0	0	0		chr12:89459718-89461004|188|21.05|0.16|7.04|-|1|POC1B,None|1	chr12:89459718-89461004|188|21.05|0.16|7.04|-|1|POC1B,None|1	chr12:89459718-89461004|188|21.05|0.16|7.04|-|1|POC1B,None|1	MULTI-MATCH	A375_MHC_IP_R2	2		2	494.313492	986.612431	-0.34599	-0.00017103	-0.14245	-7.0416E-05	-0.48844	-0.00024144	494.31352008950853	86.536	0.40927	87.269	87.049	87.458	0.733	-0.17486	-0.00010264	NaN	15.847	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	987180			48693	421	35399	35685							0.11858906374038725
SIVVKNDVIL	10	Unmodified	_SIVVKNDVIL_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-MSMS	A375_MHC_IP_R1	1	367.629150390625	3	367.228897	1098.66486	0.26364	9.6817E-05	-0.05148	-1.8905E-05	0.21216	7.7912E-05	367.2288644652044	47.406	0.71501	47.406	47.003	47.718	0					23	13	3	0	0	0	0.69871	1	16674	16674		12.873	12.873	1	5994900			48694	9505	35400	35686	47596	47596					0.1194744471699778
SIVVSGIYTY	10	Unmodified	_SIVVSGIYTY_					0	0	0			REV__ENST00000471904.1_1_2:192128111-192215016:+|nuORF	REV__ENST00000471904.1_1_2:192128111-192215016:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	551.6947021484375	2	551.294965	1100.57538	-0.95173	-0.00052468	0.95899	0.00052868	0.007259	4.0018E-06	551.2955488966386	67.929	0.45487	67.929	67.754	68.209	0					20	8	3	0	0	0	0.83425	1	24648	24648		22.736	8.8302	1	2221000	+		48695	18462	35401	35687	47597	47597					0.02911190037639244
SIVVSGIYTY	10	Unmodified	_SIVVSGIYTY_					0	0	0			REV__ENST00000471904.1_1_2:192128111-192215016:+|nuORF	REV__ENST00000471904.1_1_2:192128111-192215016:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	551.294965	1100.57538	-0.8078	-0.00044534	0.46652	0.00025719	-0.34129	-0.00018815	551.2949024200115	67.222	0.6091	67.958	67.546	68.155	0.73631	0.014808	-0.00037662	NaN	22.736	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1728700	+		48696	18462	35401	35687							0.02911190037639244
SIVYFELDF	9	Unmodified	_SIVYFELDF_					0	0	0		TRABD2A|p.L90F|1|0.38|ENSG00000186854|chr2:84870626-84870626|G/A|missense_variant	TRABD2A|p.L90F|1|0.38|ENSG00000186854|chr2:84870626-84870626|G/A|missense_variant	TRABD2A|p.L90F|1|0.38|ENSG00000186854|chr2:84870626-84870626|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	566.1763305664062	2	566.78169	1131.54883	-0.49875	-0.00028268	-0.75331	-0.00042696	-1.2521	-0.00070965	567.2837669308028	32.974	0.76266	33.711	33.317	34.079	0.73691					34	14	4	0	0	0	0.5212	1	11818	11818		21.747	0	1	4982200			48697	30067	35402	35688	47598	47598					-0.011684988537354002
SIVYKKRKRRR	11	Unmodified	_SIVYKKRKRRR_					0	0	0			REV__tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	REV__tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	MSMS	A375_MHC_IP_R1	1	745.8828125	2	745.481143	1488.94773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.574	1	66.574	66.074	67.074	0								0	0	0	0.16334	1	24111	24111		1.3295	1.3295	1		+		48698	28583	35403	35689	47599	47599					0.22281673955944825
SIVYWFEMLF	10	Unmodified	_SIVYWFEMLF_					0	0	0		tr|U7SS27|U7SS27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01518PE=4SV=1	tr|U7SS27|U7SS27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01518PE=4SV=1	tr|U7SS27|U7SS27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01518PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	446.1584167480469	3	445.554504	1333.64168	-0.0466	-2.0763E-05	-0.20244	-9.0196E-05	-0.24904	-0.00011096	445.888687383668	50.249	0.46082	50.249	50.049	50.51	0					10	8	2	0	0	0	0.94587	1	17734	17734		1.9064	1.2087	1	1023300			48699	29623	35404	35690	47600	47600					-0.011793173920068512
SIWEVFAV	8	Unmodified	_SIWEVFAV_					0	0	0			REV__TNR|p.P526S|1|0.32|ENSG00000116147|chr1:175386233-175386233|G/A|missense_variant	REV__TNR|p.P526S|1|0.32|ENSG00000116147|chr1:175386233-175386233|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	475.2872619628906	2	475.752736	949.490919	-0.79008	-0.00037588	-0.43902	-0.00020886	-1.2291	-0.00058475	475.7523825583617	26.73	0.86826	27.39	27.109	27.977	0.65992					21	16	2	0	0	0	0.90224	1	9275	9275		19.439	19.439	1	2121700	+		48700	28146	35405	35691	47601	47601					0.014152840115229992
SIWFVWGE	8	Unmodified	_SIWFVWGE_					0	0	0			REV__ENST00000367306.5_1_1:201453202-201453502:-|nuORF	REV__ENST00000367306.5_1_1:201453202-201453502:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	511.9883117675781	2	512.25036	1022.48617	-0.95482	-0.00048911	-3.8829	-0.001989	-4.8377	-0.0024781	512.2499990549348	34.536	0.50763	35.289	35.109	35.616	0.75273					17	9	3	0	0	0	0.94479	1	12513	12513		13.508	1.8676	1	1045500	+		48701	23967	35406	35692	47602	47602					-0.024176001312412154
SIWQIEFWDRF	11	Unmodified	_SIWQIEFWDRF_					0	0	0			REV__ENSG00000112619|ENST00000230381|PRPH2	REV__ENSG00000112619|ENST00000230381|PRPH2	MSMS	A375_MHC_IP_R1	1	509.67333984375	3	509.585743	1525.7354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.853	1	33.853	33.353	34.353	0								0	0	0	0.16313	1	11094	11094		2.4348	1.1051	1		+		48702	17741	35407	35693	47603	47603					-0.006438819653567407
SIWRVSSVK	9	Unmodified	_SIWRVSSVK_					0	0	0			REV__nc|ENSG00000154845|Q8TF05-2|PPP4R1	REV__nc|ENSG00000154845|Q8TF05-2|PPP4R1	MSMS	A375_MHC_IP_R2	2	354.5961608886719	3	354.541586	1060.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.533	1	26.185	25.685	26.685	0.65166								0	0	0	0.14934	1	8543	8543		22.658	12.508	1		+		48703	19902	35408	35694	47604	47604					0.07505138088527019
SIWSFCKAL	9	Unmodified	_SIWSFCKAL_					0	0	0		ENST00000521713.1_1_7:6179681-6199085:+|nuORF	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	528.6759033203125	2	527.773145	1053.53174	-0.47347	-0.00024988	0.41761	0.0002204	-0.055862	-2.9482E-05	528.2750136024578	93.551	2.3894	93.551	92.617	95.007	0					72	46	2	0	0	0	0.43185	1	34444	34444		23.148	3.7094	1	1834100			48704	13012	35409	35695	47605	47605					0.007113020594943009
SIWTHWCFWVV	11	Unmodified	_SIWTHWCFWVV_					0	0	0			REV__ENST00000514328.5_2_4:114452409-114458504:-|nuORF	REV__ENST00000514328.5_2_4:114452409-114458504:-|nuORF	MSMS	A375_MHC_IP_R1	1	488.4693603515625	3	488.569147	1462.68561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.579	1	65.579	65.079	66.079	0								0	0	0	0.16305	1	23744	23744		2.8433	0.4085	1		+		48705	25650	35410	35696	47606	47606					-0.02722288175027643
SIYANKANPF	10	Unmodified	_SIYANKANPF_					0	0	0			REV__tr|U7T154|U7T154_FUSNURibonucleaseM5OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnmVPE=3SV=1	REV__tr|U7T154|U7T154_FUSNURibonucleaseM5OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnmVPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	375.6134033203125	3	375.529346	1123.56621	0.28397	0.00010664	-0.58573	-0.00021996	-0.30176	-0.00011332	375.5276207712738	42.032	0.20155	42.032	41.88	42.082	0					5	3	2	0	0	0	0.92227	1	14527	14527		2.8433	0	1	325800	+		48706	28697	35411	35697	47607	47607					0.009368414719347129
SIYEEKERHRE	11	Unmodified	_SIYEEKERHRE_					0	0	0			REV__nc|ENSG00000167110|Q08379-2|GOLGA2	REV__nc|ENSG00000167110|Q08379-2|GOLGA2	MSMS	A375_MHC_IP_R2	2	492.4776306152344	3	492.579428	1474.71645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.846	1	40.62	40.12	41.12	0.77451								0	0	0	0.16269	1	14732	14732		4.7159	3.3863	1		+		48707	20732	35412	35698	47608	47608					-0.0019146332706441171
SIYEYRADT	9	Unmodified	_SIYEYRADT_					0	0	0			REV__tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1	REV__tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	559.9542236328125	2	559.261653	1116.50875	-0.68101	-0.00038087	0.21841	0.00012215	-0.46261	-0.00025872	559.2616627705698	41.088	0.35303	41.088	40.913	41.266	0					9	6	2	0	0	0	0.74412	1	14216	14216		10.074	3.8681	1	1626000	+		48708	28244	35413	35699	47609	47609					-0.0448404552428201
SIYFCSATSY	10	Unmodified	_SIYFCSATSY_					0	0	0		ENST00000212015.10_1_10:69647268-69648700:+|nuORF	ENST00000212015.10_1_10:69647268-69648700:+|nuORF	ENST00000212015.10_1_10:69647268-69648700:+|nuORF	MSMS	A375_MHC_IP_R1	1	571.1925048828125	2	571.247157	1140.47976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.586	1	92.586	92.086	93.086	0								0	0	0	0.15158	1	34027	34027		14.838	2.3067	1				48709	10082	35414	35700	47610	47610					-0.08485906144915134
SIYGGFLLGV	10	Unmodified	_SIYGGFLLGV_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-SECPEP	A375_MHC_IP_R2	2	513.6864013671875	2	513.286943	1024.55933	-0.7356	-0.00037757	-0.1307	-6.7085E-05	-0.86629	-0.00044466	513.2868121461863	131.58	0.25417	131.77	131.65	131.9	0.18953					6	4	2	0	0	0	0.85226	1	51787	51787		10.074	3.8681	1	5832100			48710	8584	35415	35701	47611	47611					0.04803528591401118
SIYLELSGQ	9	Unmodified	_SIYLELSGQ_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-SECPEP	A375_MHC_IP_R2	2	505.6638488769531	2	505.263665	1008.51278	-0.61534	-0.00031091	0.54715	0.00027645	-0.068189	-3.4454E-05	505.2639137737607	89.464	0.45497	90.196	89.936	90.391	0.7318					14	8	2	0	0	0	0.47368	1	34046	34046		10.074	0	1	1361100			48711	14680	35416	35702	47612	47612					0.008860439694444722
SIYLHTFHNIE	11	Unmodified	_SIYLHTFHNIE_					0	0	0		ZBTB40|p.H939Y|1|0.15|ENSG00000184677|chr1:22517446-22517446|C/T|missense_variant	ZBTB40|p.H939Y|1|0.15|ENSG00000184677|chr1:22517446-22517446|C/T|missense_variant	ZBTB40|p.H939Y|1|0.15|ENSG00000184677|chr1:22517446-22517446|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	687.4840087890625	2	687.346052	1372.67755	-0.74882	-0.0005147	-0.46139	-0.00031714	-1.2102	-0.00083183	687.3455853820454	81.396	0.35248	82.139	82.029	82.381	0.74293					8	6	2	0	0	0	0.73318	1	30889	30889		10.8	5.5026	1	2145100			48712	30184	35417	35703	47613	47613					0.0061185610925349465
SIYLNAQK	8	Unmodified	_SIYLNAQK_					0	0	0			REV__ENST00000430443.1_1_3:190432916-190432991:+|nuORF	REV__ENST00000430443.1_1_3:190432916-190432991:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	468.705078125	2	468.761092	935.507631	-0.98219	-0.00046041	0.20336	9.5327E-05	-0.77883	-0.00036508	468.7610744386582	58.867	0.4057	59.614	59.336	59.742	0.74714					13	7	2	0	0	0	0.76248	1	22205	22205		16.942	0	1	1481400	+		48713	24694	35418	35704	47614	47614					0.037297848974731096
SIYLNHTML	9	Unmodified	_SIYLNHTML_					0	0	0		ENSG00000128829|ENST00000263791|EIF2AK4;nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	ENSG00000128829|ENST00000263791|EIF2AK4	ENSG00000128829|ENST00000263791|EIF2AK4	MULTI-SECPEP	A375_MHC_IP_R1	1	363.9342956542969	3	364.523315	1090.54812	0.28576	0.00010417	0.035071	1.2784E-05	0.32084	0.00011695	364.5232672546376	46.052	0.45652	46.052	45.839	46.295	0					13	8	2	0	0	0	0.73363	1	16140	16140		7.1017	3.5052	1	997720			48714	4165	35419	35705	47615	47615					0.00646383225603131
SIYLNKGEKW	10	Unmodified	_SIYLNKGEKW_					0	0	0		ENST00000240328.3_1_17:59485871-59486309:+|nuORF	ENST00000240328.3_1_17:59485871-59486309:+|nuORF	ENST00000240328.3_1_17:59485871-59486309:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	619.9454956054688	2	619.332413	1236.65027	-0.336	-0.0002081	0.10025	6.2086E-05	-0.23575	-0.00014601	619.3324045543142	101.28	0.70853	101.28	100.89	101.6	0					29	13	3	0	0	0	0.55789	1	37324	37324		24.021	1.3625	1	5393500			48715	10170	35420	35706	47616	47616					0.04141372568847146
SIYPKLKFW	9	Unmodified	_SIYPKLKFW_					0	0	0		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;OSBPL1A|p.F849Lfs*8|1|0.23|ENSG00000141447|chr18:24166691-24166691|A/-|frameshift_variant;ENSG00000141447|ENST00000319481|OSBPL1A	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MULTI-SECPEP	A375_MHC_IP_R2	2	394.9619445800781	3	394.562099	1180.66447	-0.08343	-3.2918E-05	-0.14193	-5.6E-05	-0.22536	-8.8918E-05	394.56200794116194	88.826	0.45602	89.558	89.279	89.735	0.7318					11	8	2	0	0	0	0.75519	1	33839	33839		10.151	8.4083	1	2132400			48716	4265	35421	35707	47617	47617					0.08136069787792621
SIYPKLKFW	9	Unmodified	_SIYPKLKFW_					0	0	0		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;OSBPL1A|p.F849Lfs*8|1|0.23|ENSG00000141447|chr18:24166691-24166691|A/-|frameshift_variant;ENSG00000141447|ENST00000319481|OSBPL1A	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MULTI-MATCH	A375_MHC_IP_R1	1		3	394.562099	1180.66447	-0.029118	-1.1489E-05	0.26543	0.00010473	0.23632	9.3241E-05	394.56214518808036	89.67	0.50458	89.67	89.426	89.931	0	0.056056	0.00030131	NaN	10.151	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1413900			48717	4265	35421	35707							0.08136069787792621
SIYPPVTA	8	Unmodified	_SIYPPVTA_					0	0	0		ENST00000509330.5_1_6:64346386-64346665:+|nuORF	ENST00000509330.5_1_6:64346386-64346665:+|nuORF	ENST00000509330.5_1_6:64346386-64346665:+|nuORF	MSMS	A375_MHC_IP_R2	2	424.15625	2	424.231636	846.448719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.62	1	143.64	143.14	144.14	0.024414								0	0	0	0.16876	1	56122	56122		4.756	2.1785	1				48718	12889	35422	35708	47618	47618					0.019353086031514977
SIYPSPTGV	9	Unmodified	_SIYPSPTGV_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	A375_MHC_IP_R1	1	461.1396789550781	2	460.739825	919.465098	-0.4972	-0.00022908	0.35258	0.00016245	-0.14462	-6.6632E-05	460.73995666243593	68.347	1.0148	68.347	67.955	68.969	0					43	19	3	0	0	0	0.011207	1	24725	24725		112.59	64.247	1	5952600			48719	7864	35423	35709	47619	47619					0.002143897692462815
SIYPSPTGV	9	Unmodified	_SIYPSPTGV_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	A375_MHC_IP_R2	2	461.13946533203125	2	460.739825	919.465098	-0.40356	-0.00018593	-0.029201	-1.3454E-05	-0.43276	-0.00019939	460.7397706403532	67.69	0.86694	68.427	68.001	68.868	0.73631					39	16	3	0	0	0	0.0091148	1	25559	25559		141.83	67.404	1	7019100			48720	7864	35423	35709	47620	47620					0.002143897692462815
SIYPTVKPYYY	11	Unmodified	_SIYPTVKPYYY_					0	0	0		DPP6|p.H343Y|1|0.32|ENSG00000130226|chr7:154769560-154769560|C/T|missense_variant	DPP6|p.H343Y|1|0.32|ENSG00000130226|chr7:154769560-154769560|C/T|missense_variant	DPP6|p.H343Y|1|0.32|ENSG00000130226|chr7:154769560-154769560|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	697.078125	2	697.355554	1392.69655	-0.73454	-0.00051224	0.23955	0.00016705	-0.49499	-0.00034518	697.3555040322727	90.039	0.40472	90.039	89.88	90.285	0					10	7	2	0	0	0	0.73135	1	33174	33174		7.609	0	1	1520700			48721	792	35424	35710	47621	47621					0.01591392680302306
SIYPVCLAPY	10	Unmodified	_SIYPVCLAPY_					0	0	0		ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;DMXL2|p.T2022Hfs*16|1|0.5|ENSG00000104093|chr15:51481042-51481042|T/-|frameshift_variant;DMXL2|p.I1754Lfs*19|1|0.32|ENSG00000104093|chr15:51486296-51486296|A/-|frameshift_variant	ENSG00000104093|ENST00000560891|DMXL2	ENSG00000104093|ENST00000560891|DMXL2	MULTI-SECPEP	A375_MHC_IP_R2	2	375.91705322265625	3	375.859816	1124.55762	-0.012206	-4.5878E-06	2.4783	0.00093149	2.4661	0.0009269	376.19508938225516	19.125	0.25011	19.728	19.583	19.833	0.60308					8	4	2	0	0	0	0.91909	1	5808	5808		5.4027	0	1	1369000			48722	2485	35425	35711	47622	47622					0.00032151511118172493
SIYRERKKRER	11	Unmodified	_SIYRERKKRER_					0	0	0			REV__nc|ENSG00000198003|A5D8V7-2|ODAD3	REV__nc|ENSG00000198003|A5D8V7-2|ODAD3	MSMS	A375_MHC_IP_R1	1	760.9677124023438	2	760.942047	1519.86954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.25	1	124.25	123.75	124.75	0								0	0	0	0.16334	1	46714	46714		1.3295	0	1		+		48723	22335	35426	35712	47623	47623					0.13040196580050178
SIYSLSKHL	9	Unmodified	_SIYSLSKHL_					0	0	0		nc|ENSG00000134686|Q8IXK0-3|PHC2;ENST00000485928.5_1_1:33791428-33799821:-|nuORF	nc|ENSG00000134686|Q8IXK0-3|PHC2	nc|ENSG00000134686|Q8IXK0-3|PHC2	MULTI-SECPEP	A375_MHC_IP_R2	2	524.2036743164062	2	524.295299	1046.57605	-0.44691	-0.00023431	-0.34078	-0.00017867	-0.78769	-0.00041298	524.2949543927868	67.872	0.60979	68.607	68.409	69.018	0.73511					16	11	2	0	0	0	0.63327	1	25660	25660		18.146	5.9057	1	1617600			48724	12578	35427	35713	47624	47624					0.05462029477325814
SIYWRMKKFGK	11	Unmodified	_SIYWRMKKFGK_					0	0	0		ENST00000368644.5_1_10:131969896-131973276:+|nuORF	ENST00000368644.5_1_10:131969896-131973276:+|nuORF	ENST00000368644.5_1_10:131969896-131973276:+|nuORF	MSMS	A375_MHC_IP_R2	2	722.3782958984375	2	722.400107	1442.78566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.35	1	125.65	125.15	126.15	0.2951								0	0	0	0.16179	1	48837	48837		9.3831	0	1				48725	11119	35428	35714	47625	47625					0.08197949158784468
SIYYDNSGVAL	11	Unmodified	_SIYYDNSGVAL_					0	0	0			REV__nc|ENSG00000141564|Q8N122-3|RPTOR	REV__nc|ENSG00000141564|Q8N122-3|RPTOR	MULTI-MSMS	A375_MHC_IP_R1	1	601.6902465820312	2	601.290411	1200.56627	-0.32351	-0.00019453	0.04858	2.921E-05	-0.27493	-0.00016532	601.2903326553886	55.697	0.51042	55.697	55.381	55.891	0					20	9	3	0	0	0	0.45155	1	19948	19948		34.932	9.9411	1	3608200	+		48726	19279	35429	35715	47626	47626					-0.025992033186867047
SIYYDNSGVAL	11	Unmodified	_SIYYDNSGVAL_					0	0	0			REV__nc|ENSG00000141564|Q8N122-3|RPTOR	REV__nc|ENSG00000141564|Q8N122-3|RPTOR	MULTI-MSMS	A375_MHC_IP_R2	2	601.6897583007812	2	601.290411	1200.56627	-0.63905	-0.00038425	0.15452	9.291E-05	-0.48453	-0.00029134	601.2904854988222	55.003	0.40931	55.754	55.523	55.933	0.75075					18	7	3	0	0	0	0.45155	1	20783	20783		34.932	2.1464	1	4669900	+		48727	19279	35429	35715	47627	47627					-0.025992033186867047
SIYYDNSGVAL	11	Unmodified	_SIYYDNSGVAL_					0	0	0			REV__nc|ENSG00000141564|Q8N122-3|RPTOR	REV__nc|ENSG00000141564|Q8N122-3|RPTOR	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	601.290411	1200.56627	-0.32351	-0.00019453	0.04858	2.921E-05	-0.27493	-0.00016532	601.2903326553886	55.697	0.51042	55.697	55.381	55.891	0	-0.028718	-5.0792E-05	NaN	34.932	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3608200	+		48728	19279	35429	35715							-0.025992033186867047
SKARARTP	8	Unmodified	_SKARARTP_					0	0	0			REV__nc|ENSG00000133121|Q9Y3M8-4|STARD13	REV__nc|ENSG00000133121|Q9Y3M8-4|STARD13	MULTI-SECPEP	A375_MHC_IP_R2	2	444.1640930175781	2	443.764501	885.514448	-0.34072	-0.0001512	0.32837	0.00014572	-0.012345	-5.4781E-06	443.7645235279702	103.38	2.0328	104.14	103.02	105.06	0.76428					87	39	3	0	0	0	0.972	1	39189	39189		6.7232	0	1	6238800	+		48729	18709	35430	35716	47628	47628					0.0671114256869032
SKDDWREFRTL	11	Unmodified	_SKDDWREFRTL_					0	0	0		nc|ENSG00000154678|Q14123-2|PDE1C;ENSG00000154678|ENST00000396191|PDE1C;nc|ENSG00000154678|Q14123-3|PDE1C	nc|ENSG00000154678|Q14123-2|PDE1C	nc|ENSG00000154678|Q14123-2|PDE1C	MULTI-SECPEP	A375_MHC_IP_R2	2	485.3118896484375	3	484.912519	1451.71573	-0.57736	-0.00027997	-0.77662	-0.00037659	-1.354	-0.00065656	484.9121005620044	70.574	0.45489	71.308	71.048	71.503	0.73421					25	8	4	0	0	0	0.99411	1	26732	26732		9.7643	3.5299	1	7235400			48730	6100	35431	35717	47629	47629					0.007937420238704362
SKDEPFKYL	9	Unmodified	_SKDEPFKYL_					0	0	0			REV__SYT15|p.Q209Sfs*20|1|0.26|ENSG00000204176|chr10:46582165-46582165|C/-|frameshift_variant	REV__SYT15|p.Q209Sfs*20|1|0.26|ENSG00000204176|chr10:46582165-46582165|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	375.9293212890625	3	376.197485	1125.57063	0.1706	6.4177E-05	0.85134	0.00032027	1.0219	0.00038445	376.198047554351	19.248	0.70727	19.248	19.221	19.928	0					19	15	2	0	0	0	0.53748	1	4890	4890		12.873	1.3547	1	12537000	+		48731	22494	35432	35718	47630	47630					0.012863058948596517
SKDFTNLLIQF	11	Unmodified	_SKDFTNLLIQF_					0	0	0			REV__nc|ENSG00000135903|P23760-8|PAX3	REV__nc|ENSG00000135903|P23760-8|PAX3	MULTI-MSMS	A375_MHC_IP_R1	1	442.9496154785156	3	442.574844	1324.7027	-0.36344	-0.00016085	2.6199	0.0011595	2.2565	0.00099865	442.5759469731329	23.457	0.25562	23.457	23.278	23.533	0					6	4	2	0	0	0	0.72964	1	6453	6453		9.2438	4.8376	1	2465300	+		48732	27242	35433	35719	47631	47631					0.05333910911804196
SKDKYAAYM	9	Unmodified	_SKDKYAAYM_					0	0	0			REV__tr|U7SNW0|U7SNW0_FUSNUTPMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01723PE=4SV=1	REV__tr|U7SNW0|U7SNW0_FUSNUTPMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01723PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	538.7269287109375	2	538.757692	1075.50083	-0.66993	-0.00036093	-0.23628	-0.0001273	-0.9062	-0.00048822	538.7573430702184	142.62	0.2556	142.65	142.53	142.79	0.030731					6	4	2	0	0	0	0.73804	1	55742	55742		3.5965	1.019	1	566710	+		48733	28344	35434	35720	47632	47632					-0.033898960454280314
SKDSFLAL	8	Unmodified	_SKDSFLAL_					0	0	0			REV__NBL1|p.P29S|1|0.35|ENSG00000158747|chr1:19655115-19655115|C/T|missense_variant	REV__NBL1|p.P29S|1|0.35|ENSG00000158747|chr1:19655115-19655115|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	440.67431640625	2	440.742368	879.470183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.444	1	49.201	48.701	49.701	0.75737								0	0	0	0.16876	1	18191	18191		24.674	0	1		+		48734	27082	35435	35721	47633	47633					0.025626936318417393
SKEFFSFES	9	Unmodified	_SKEFFSFES_					0	0	0			REV__ENST00000398868.7_1_11:63393929-63393998:-|nuORF	REV__ENST00000398868.7_1_11:63393929-63393998:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	553.7050170898438	2	554.253297	1106.49204	-1.1073	-0.00061371	1.1476	0.00063609	0.040377	2.2379E-05	554.2533321278868	58.543	0.40736	59.292	59.083	59.491	0.74894					11	7	2	0	0	0	0.73363	1	22103	22103		6.7232	0	1	632860	+		48735	24378	35436	35722	47634	47634					-0.05694546410222756
SKEVKKALA	9	Unmodified	_SKEVKKALA_					0	0	0		ENSG00000149133|ENST00000278409|OR5F1	ENSG00000149133|ENST00000278409|OR5F1	ENSG00000149133|ENST00000278409|OR5F1	MULTI-SECPEP	A375_MHC_IP_R1	1	487.9554443359375	2	487.305667	972.596781	-0.61387	-0.00029914	-1.7522	-0.00085383	-2.366	-0.001153	487.304691393642	141.49	0.25439	141.49	141.37	141.63	0					6	4	2	0	0	0	0.8028	1	54323	54323		4.3292	0	1	1159400			48736	5784	35437	35723	47635	47635					0.10938619856983678
SKEWSIGY	8	Unmodified	_SKEWSIGY_					0	0	0		ENST00000446923.6_1_10:31610338-31610398:+|nuORF	ENST00000446923.6_1_10:31610338-31610398:+|nuORF	ENST00000446923.6_1_10:31610338-31610398:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	485.63690185546875	2	485.23745	968.460347	-0.80225	-0.00038928	-1.6364	-0.00079406	-2.4387	-0.0011833	485.2374514756353	49.096	0.76095	49.853	49.536	50.297	0.75737					26	14	3	0	0	0	0.69583	1	18446	18446		36.044	0	1	1368400			48737	12041	35438	35724	47636	47636					-0.025144943735199377
SKEWSIGY	8	Unmodified	_SKEWSIGY_					0	0	0		ENST00000446923.6_1_10:31610338-31610398:+|nuORF	ENST00000446923.6_1_10:31610338-31610398:+|nuORF	ENST00000446923.6_1_10:31610338-31610398:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	485.23745	968.460347	-0.13567	-6.5831E-05	-1.4432	-0.00070031	-1.5789	-0.00076614	485.23715794526123	49.947	0.91789	49.947	49.49	50.408	0	0.047214	8.757E-05	NaN	36.044	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1147100			48738	12041	35438	35724							-0.025144943735199377
SKFDKKKLRRR	11	Unmodified	_SKFDKKKLRRR_					0	0	0			REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	MSMS	A375_MHC_IP_R1	1	488.0412902832031	3	487.975676	1460.9052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.67	1	148.67	148.17	149.17	0								0	0	0	0.16358	1	56767	56767		0.08335	0	1		+		48739	19954	35439	35725	47637	47637					0.1931827882772268
SKFEKTELTS	10	Unmodified	_SKFEKTELTS_					0	0	0			REV__NXPH2|p.S182F|1|0.5|ENSG00000144227|chr2:138671172-138671172|G/A|missense_variant	REV__NXPH2|p.S182F|1|0.5|ENSG00000144227|chr2:138671172-138671172|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	389.9207458496094	3	390.539799	1168.59757	-0.19193	-7.4957E-05	-0.30455	-0.00011894	-0.49648	-0.0001939	390.5397524678821	30.667	0.70689	31.386	31.114	31.821	0.71857					35	13	4	0	0	0	0.92199	1	10849	10849		10.899	10.899	1	22406000	+		48740	27636	35440	35726	47638	47638					0.020013697153672183
SKFFWTRI	8	Unmodified	_SKFFWTRI_					0	0	0		CFHR5|p.S65F|2|0.2|ENSG00000134389|chr1:196983020-196983020|C/T|missense_variant;CFHR2|p.S65F|1|0.54|ENSG00000080910|chr1:196949590-196949590|C/T|missense_variant	CFHR5|p.S65F|2|0.2|ENSG00000134389|chr1:196983020-196983020|C/T|missense_variant	CFHR5|p.S65F|2|0.2|ENSG00000134389|chr1:196983020-196983020|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	362.9569091796875	3	362.202793	1083.58655	0.13189	4.7769E-05	0.010202	3.695E-06	0.14209	5.1464E-05	362.2029986550073	43.904	0.30427	43.904	43.655	43.959	0					6	5	2	0	0	0	0.972	1	15309	15309		5.7319	3.2334	1	357620			48741	379	35441	35727	47639	47639					0.048100569224061474
SKFLCKRVLKR	11	Unmodified	_SKFLCKRVLKR_					0	0	0		ENST00000443070.5_1_2:74002080-74005468:-|nuORF	ENST00000443070.5_1_2:74002080-74005468:-|nuORF	ENST00000443070.5_1_2:74002080-74005468:-|nuORF	MSMS	A375_MHC_IP_R1	1	689.6586303710938	2	689.429199	1376.84384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.8	1	116.8	116.3	117.3	0								0	0	0	0.16265	1	42853	42853		4.897	3.4151	1				48742	12004	35442	35728	47640	47640					0.17049630804081062
SKFTLKKLLLL	11	Unmodified	_SKFTLKKLLLL_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant;nc|ENSG00000066279|Q8IZT6-2|ASPM;ASPM|p.V2172Sfs*9|1|0.47|ENSG00000066279|chr1:197102741-197102741|A/-|frameshift_variant;ASPM|p.L1368*|1|0.77|ENSG00000066279|chr1:197105149-197105149|G/-|frameshift_variant	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MSMS	A375_MHC_IP_R1	1	652.4763793945312	2	652.439224	1302.86389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.507	1	24.507	24.007	25.007	0								0	0	0	0.1636	1	6972	6972		0	0	1				48743	1407	35443	35729	47641	47641					0.22457705015699503
SKFTLKKLLLL	11	Unmodified	_SKFTLKKLLLL_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant;nc|ENSG00000066279|Q8IZT6-2|ASPM;ASPM|p.V2172Sfs*9|1|0.47|ENSG00000066279|chr1:197102741-197102741|A/-|frameshift_variant;ASPM|p.L1368*|1|0.77|ENSG00000066279|chr1:197105149-197105149|G/-|frameshift_variant	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MSMS	A375_MHC_IP_R2	2	652.4769287109375	2	652.439224	1302.86389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.12	1	24.763	24.263	25.263	0.64368								0	0	0	0.1636	1	7873	7873		0	0	1				48744	1407	35443	35729	47642	47642					0.22457705015699503
SKGACGSC	8	Unmodified	_SKGACGSC_					0	0	0		ENSG00000205869|ENST00000382171|KRTAP5-1;ENSG00000185940|ENST00000399676|KRTAP5-5	ENSG00000205869|ENST00000382171|KRTAP5-1	ENSG00000205869|ENST00000382171|KRTAP5-1	MULTI-SECPEP	A375_MHC_IP_R1	1	357.0427551269531	2	356.641274	711.267995	0.12877	4.5923E-05	-0.9756	-0.00034794	-0.84683	-0.00030201	356.64125057117576	128.41	0.45575	128.41	128.23	128.68	0					12	8	3	0	0	0	0.972	1	49328	49328		0	0	1	16591000			48745	9533	35444	35730	47643	47643					-0.09918856316858182
SKGGAKAG	8	Unmodified	_SKGGAKAG_					0	0	0			REV__ENSG00000067798|ENST00000397909|NAV3	REV__ENSG00000067798|ENST00000397909|NAV3	MULTI-MSMS	A375_MHC_IP_R1	1	676.3519287109375	1	675.378414	674.371138	-0.60793	-0.00041058	1.1407	0.00077042	0.53279	0.00035983	675.3795658385274	104.09	0.86404	104.09	103.63	104.49	0					23	16	2	0	0	0	0.77839	1	38189	38189		0.79363	0	1	1495000	+		48746	16534	35445	35731	47644	47644					0.02092715457615668
SKGGAKAG	8	Unmodified	_SKGGAKAG_					0	0	0			REV__ENSG00000067798|ENST00000397909|NAV3	REV__ENSG00000067798|ENST00000397909|NAV3	MULTI-SECPEP	A375_MHC_IP_R1	1	676.0941772460938	1	675.378414	674.371138	-0.60793	-0.00041058	1.1407	0.00077042	0.53279	0.00035983	675.3795658385274	104.09	0.86404	104.09	103.63	104.49	0					23	16	2	0	0	0	0.972	1	38070	38070		0.79363	0	1	1495000	+		48747	16534	35445	35731	47645	47645					0.02092715457615668
SKGKIYPVGY	10	Unmodified	_SKGKIYPVGY_					0	0	0		ENSG00000204539|ENST00000376288|CDSN	ENSG00000204539|ENST00000376288|CDSN	ENSG00000204539|ENST00000376288|CDSN	MULTI-SECPEP	A375_MHC_IP_R1	1	556.1688842773438	2	556.310949	1110.60735	-0.57306	-0.0003188	-0.22955	-0.0001277	-0.80261	-0.0004465	556.3105758394632	31.895	0.3572	31.895	31.718	32.075	0					11	6	2	0	0	0	0.90611	1	10264	10264		22.658	22.658	1	1651000			48748	9455	35446	35732	47646	47646					0.05646602511410492
SKGKIYPVGY	10	Unmodified	_SKGKIYPVGY_					0	0	0		ENSG00000204539|ENST00000376288|CDSN	ENSG00000204539|ENST00000376288|CDSN	ENSG00000204539|ENST00000376288|CDSN	MULTI-SECPEP	A375_MHC_IP_R2	2	556.7105102539062	2	556.310949	1110.60735	-0.80787	-0.00044943	-0.22853	-0.00012714	-1.0364	-0.00057656	556.3106903192122	31.093	0.56008	31.811	31.567	32.128	0.71857					12	10	2	0	0	0	0.79907	1	11005	11005		34.222	28.03	1	2085900			48749	9455	35446	35732	47647	47647					0.05646602511410492
SKGPAVGIDLG	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SKGPAVGIDLG_					1	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000532167.5_1_11:122930938-122932032:-|nuORF;ENST00000531063.1_1_11:122931759-122932032:-|nuORF;ENST00000533238.5_1_11:122929516-122932032:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	A375_MHC_IP_R1	1	528.6898193359375	2	528.290214	1054.56587	-0.59109	-0.00031227	-0.93247	-0.00049261	-1.5236	-0.00080488	528.2901492523561	81.201	0.71066	81.201	80.846	81.556	0					32	13	3	0	0	0	0.2128	1	29616	29616		53.47	14.257	1	8358600			48750	2906	35447	35733	47648	47648					0.04077421752117516
SKGPAVGIDLG	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SKGPAVGIDLG_					1	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000532167.5_1_11:122930938-122932032:-|nuORF;ENST00000531063.1_1_11:122931759-122932032:-|nuORF;ENST00000533238.5_1_11:122929516-122932032:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	A375_MHC_IP_R2	2	1055.482177734375	1	1055.57315	1054.56587	0.033156	3.4999E-05	-0.44177	-0.00046632	-0.40861	-0.00043132	1055.5724979356098	80.475	0.45593	81.22	80.961	81.416	0.74473					13	8	2	0	0	0	0.1293	1	30508	30508		64.927	33.658	1	2822300			48751	2906	35447	35733	47649	47649					0.04077421752117516
SKGPAVGIDLG	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SKGPAVGIDLG_					1	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000532167.5_1_11:122930938-122932032:-|nuORF;ENST00000531063.1_1_11:122931759-122932032:-|nuORF;ENST00000533238.5_1_11:122929516-122932032:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MATCH	A375_MHC_IP_R1	1		1	1055.57315	1054.56587	0.072816	7.6863E-05	0.10325	0.00010898	0.17606	0.00018585	1055.5732818337558	81.228	0.50817	81.228	80.795	81.303	0	0.0039357	0.0002324	NaN	64.927	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3767600			48752	2906	35447	35733							0.04077421752117516
SKHRPRARA	9	Unmodified	_SKHRPRARA_					0	0	0			REV__nc|ENSG00000146966|Q9ULE3-2|DENND2A	REV__nc|ENSG00000146966|Q9ULE3-2|DENND2A	MULTI-MSMS	A375_MHC_IP_R1	1	360.61566162109375	3	360.216207	1077.62679	0.076226	2.7458E-05	-1.4275	-0.00051422	-1.3513	-0.00048676	360.2155936943433	64.599	0.35695	64.599	64.393	64.75	0					10	6	2	0	0	0	0.73141	1	23404	23404		4.1895	4.1895	1	953580	+		48753	19561	35448	35734	47650	47650					0.0910841636555233
SKIDFQERL	9	Unmodified	_SKIDFQERL_					0	0	0		tr|U7SUY3|U7SUY3_FUSNUDNAalkylationrepairenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01436PE=4SV=1	tr|U7SUY3|U7SUY3_FUSNUDNAalkylationrepairenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01436PE=4SV=1	tr|U7SUY3|U7SUY3_FUSNUDNAalkylationrepairenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01436PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	378.98529052734375	3	379.208384	1134.60332	0.94376	0.00035788	-1.5596	-0.00059142	-0.61585	-0.00023354	379.20790073664216	44.887	0.20169	44.887	44.727	44.928	0					5	3	2	0	0	0	0.74597	1	15622	15622		16.566	7.8205	1	1101500			48754	29779	35449	35735	47651	47651					0.04140513017705416
SKIFSGKRKII	11	Unmodified	_SKIFSGKRKII_					0	0	0			REV__tr|U7T5Y4|U7T5Y4_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00017PE=3SV=1	REV__tr|U7T5Y4|U7T5Y4_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00017PE=3SV=1	MSMS	A375_MHC_IP_R1	1	639.1060180664062	2	638.908622	1275.80269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.19	1	135.19	134.69	135.69	0								0	0	0	0.16302	1	52127	52127		2.9952	1.5133	1		+		48755	28845	35450	35736	47652	47652					0.17582193036287208
SKKADQTSRRK	11	Unmodified	_SKKADQTSRRK_					0	0	0			REV__ENST00000576431.5_1_17:79781125-79781194:-|nuORF	REV__ENST00000576431.5_1_17:79781125-79781194:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	435.9849548339844	3	435.584625	1303.73205	-0.39107	-0.00017035	0.28522	0.00012424	-0.10586	-4.611E-05	435.58462747879423	130.94	1.3163	130.94	130.62	131.93	0					44	25	3	0	0	0	0.73698	1	50540	50540		2.2527	0.79761	1	14834000	+		48756	22716	35451	35737	47653	47653					0.09232867980631454
SKKEKRNKLKE	11	Unmodified	_SKKEKRNKLKE_					0	0	0			REV__ENSG00000172086|ENST00000347055|KRCC1	REV__ENSG00000172086|ENST00000347055|KRCC1	MULTI-MSMS	A375_MHC_IP_R2	2	463.68359375	3	463.284175	1386.8307	-0.54293	-0.00025153	-0.60387	-0.00027976	-1.1468	-0.00053129	463.28384569889374	131.34	1.1195	131.53	130.88	132	0.18953					68	21	4	0	0	0	0.73891	1	51743	51743		0.40827	0	1	17226000	+		48757	21120	35452	35738	47654	47654					0.1527547122566375
SKKEKRNKLKE	11	Unmodified	_SKKEKRNKLKE_					0	0	0			REV__ENSG00000172086|ENST00000347055|KRCC1	REV__ENSG00000172086|ENST00000347055|KRCC1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	463.284175	1386.8307	-0.46481	-0.00021534	-0.88883	-0.00041178	-1.3536	-0.00062712	463.2837344807071	131.49	1.1137	131.49	130.82	131.93	0	-0.023005	-0.0002176	NaN	0.40827	65	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18972000	+		48758	21120	35452	35738							0.1527547122566375
SKKERMLQK	9	Unmodified	_SKKERMLQK_					0	0	0		nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2	nc|ENSG00000164889|P04920-2|SLC4A2	nc|ENSG00000164889|P04920-2|SLC4A2	MULTI-MSMS	A375_MHC_IP_R2	2	575.2359619140625	2	574.334433	1146.65431	-0.23302	-0.00013383	2.1847	0.0012547	1.9517	0.0011209	574.8359254936919	130.21	1.2644	130.43	129.64	130.91	0.21419					45	24	3	0	0	0	0.69884	1	51222	51222		10.824	4.6181	1	9922800			48759	6890	35453	35739	47655	47655					0.08685138790906421
SKKFRRPDIQY	11	Unmodified	_SKKFRRPDIQY_					0	0	0		nc|ENSG00000118785|P10451-3|SPP1;nc|ENSG00000118785|P10451-4|SPP1;nc|ENSG00000118785|P10451-5|SPP1;ENSG00000118785|ENST00000395080|SPP1;ENST00000509659.5_1_4:88898870-88904045:+|nuORF	nc|ENSG00000118785|P10451-3|SPP1	nc|ENSG00000118785|P10451-3|SPP1	MULTI-MSMS	A375_MHC_IP_R2	2	719.8013916015625	2	719.401692	1436.78883	-1.1541	-0.00083023	-0.44929	-0.00032322	-1.6033	-0.0011534	719.401431439183	58.982	0.40701	59.729	59.489	59.896	0.74714					12	7	2	0	0	0	0.73332	1	22358	22358		5.7319	0	1	3026300			48760	3559	35454	35740	47656	47656					0.08790915537201727
SKKGKLQSL	9	Unmodified	_SKKGKLQSL_					0	0	0		SYNE1|p.E1819K|1|0.2|ENSG00000131018|chr6:152416982-152416982|C/T|missense_variant	SYNE1|p.E1819K|1|0.2|ENSG00000131018|chr6:152416982-152416982|C/T|missense_variant	SYNE1|p.E1819K|1|0.2|ENSG00000131018|chr6:152416982-152416982|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	495.1505126953125	2	494.811116	987.60768	-0.3697	-0.00018293	-0.058604	-2.8998E-05	-0.4283	-0.00021193	494.811016934201	42.11	0.70885	42.11	41.828	42.537	0					19	13	2	0	0	0	0.67483	1	14581	14581		14.838	3.198	1	1661000			48761	29279	35455	35741	47657	47657					0.11338022231291234
SKKKKKKGR	9	Unmodified	_SKKKKKKGR_					0	0	0			REV__ENSG00000139767|ENST00000267260|SRRM4	REV__ENSG00000139767|ENST00000267260|SRRM4	MSMS	A375_MHC_IP_R1	1	363.3057861328125	3	363.252258	1086.73495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.721	1	75.721	75.221	76.221	0								0	0	0	0.15486	1	27590	27590		2.2828	2.0138	1		+		48762	19181	35456	35742	47658	47658					0.19504787896130438
SKKKKKKGR	9	Unmodified	_SKKKKKKGR_					0	0	0			REV__ENSG00000139767|ENST00000267260|SRRM4	REV__ENSG00000139767|ENST00000267260|SRRM4	MSMS	A375_MHC_IP_R2	2	363.3057861328125	3	363.252258	1086.73495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.679	1	75.417	74.917	75.917	0.73752								0	0	0	0.15486	1	28345	28345		0.86438	0.59536	1		+		48763	19181	35456	35742	47659	47659					0.19504787896130438
SKKKKRRKKKA	11	Unmodified	_SKKKKRRKKKA_					0	0	0			REV__nc|ENSG00000111142|P50579-3|METAP2	REV__nc|ENSG00000111142|P50579-3|METAP2	MSMS	A375_MHC_IP_R1	1	693.463134765625	2	693.480611	1384.94667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.29	1	114.29	113.79	114.79	0								0	0	0	0.1636	1	41901	41901		0	0	1		+		48764	17651	35457	35743	47660	47660					0.2695945958703305
SKKKNQDLY	9	Unmodified	_SKKKNQDLY_					0	0	0			REV__PLCE1|p.E1657K|2|0.52|ENSG00000138193|chr10:94284899-94284899|G/A|missense_variant	REV__PLCE1|p.E1657K|2|0.52|ENSG00000138193|chr10:94284899-94284899|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	375.6083068847656	3	375.208384	1122.60332	0.29312	0.00010998	-0.042357	-1.5893E-05	0.25076	9.4087E-05	375.20835037502235	34.583	0.45623	34.583	34.303	34.759	0					19	8	3	0	0	0	0.44024	1	11406	11406		16.566	0	1	9145800	+		48765	27795	35458	35744	47661	47661					0.04692513017721467
SKKLGVLRLSV	11	Unmodified	_SKKLGVLRLSV_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	A375_MHC_IP_R2	2	401.5970458984375	3	400.599324	1198.77614	-0.35996	-0.0001442	0.015454	6.1908E-06	-0.34451	-0.00013801	400.5992939522498	20.341	2.0788	20.952	20.197	22.276	0.61029					116	40	5	0	0	0	0.73318	1	6410	6410		5.8681	0.084707	1	56894000	+		48766	20940	35459	35745	47662	47662					0.18470504144943334
SKKLKKKTI	9	Unmodified	_SKKLKKKTI_					0	0	0			REV__ENSG00000125772|ENST00000379019|GPCPD1	REV__ENSG00000125772|ENST00000379019|GPCPD1	MSMS	A375_MHC_IP_R2	2	537.4779052734375	2	537.373884	1072.73321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.581	1	99.341	98.841	99.841	0.75977								0	0	0	0.15486	1	37398	37398		2.0598	0	1		+		48767	18361	35460	35746	47663	47663					0.1997573408750668
SKKRKKSY	8	Unmodified	_SKKRKKSY_					0	0	0		FAM133A|p.D186N|1|0.44|ENSG00000179083|chrX:93709975-93709975|G/A|missense_variant;ENSG00000179083|ENST00000683942|FAM133A;chrX:93698485-93709317|210|16.97|0.52|5.02|+|ENST00000332647|FAM133A,FAM133A	FAM133A|p.D186N|1|0.44|ENSG00000179083|chrX:93709975-93709975|G/A|missense_variant	FAM133A|p.D186N|1|0.44|ENSG00000179083|chrX:93709975-93709975|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	513.18359375	2	512.816733	1023.61891	-1.0766	-0.00055208	-0.14349	-7.3586E-05	-1.22	-0.00062566	512.8168019441645	38.245	0.76672	39.019	38.534	39.3	0.77451					39	14	4	0	0	0	0.972	1	14001	14001		9.3474	0	1	8379500			48768	530	35461	35747	47664	47664					0.10804844325411977
SKKVHEKLKER	11	Unmodified	_SKKVHEKLKER_					0	0	0		tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	1382.2271728515625	1	1381.82741	1380.82013	0.46419	0.00064144	-0.19636	-0.00027134	0.26783	0.00037009	1381.8268277053405	149.07	1.7495	149.09	148	149.75	0.018707					109	47	3	0	0	0	0.73934	1	57849	57849		0	0	1	315990			48769	29999	35462	35748	47665	47665					0.1449548857121954
SKKVTIADCGQ	11	Unmodified	_SKKVTIADCGQ_					0	0	0		ENST00000567559.1_1_16:77926680-77926809:+|nuORF	ENST00000567559.1_1_16:77926680-77926809:+|nuORF	ENST00000567559.1_1_16:77926680-77926809:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	383.9228210449219	3	383.869262	1148.58596	-0.44657	-0.00017142	-0.30474	-0.00011698	-0.7513	-0.0002884	384.2033771908493	21.377	0.66174	21.996	21.828	22.49	0.61932					14	12	2	0	0	0	0.99581	1	6799	6799		0.84494	0.28177	1	2482900			48770	13573	35463	35749	47666	47666					0.017608494203841474
SKLANILFTR	10	Unmodified	_SKLANILFTR_					0	0	0		ENSG00000240857|ENST00000381249|RDH14;ENST00000468071.1_1_2:18736459-18741913:-|nuORF	ENSG00000240857|ENST00000381249|RDH14	ENSG00000240857|ENST00000381249|RDH14	MSMS	A375_MHC_IP_R2	2	581.7301635742188	2	581.850773	1161.68699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.69	1	110.44	109.94	110.94	0.74684								0	0	0	0.15465	1	41391	41391		5.7319	0.50118	1				48771	9778	35464	35750	47667	47667					0.11261669185410028
SKLDHDSKLS	10	Unmodified	_SKLDHDSKLS_					0	0	0		ENST00000504986.5_1_4:41962243-41962348:+|nuORF	ENST00000504986.5_1_4:41962243-41962348:+|nuORF	ENST00000504986.5_1_4:41962243-41962348:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	377.11688232421875	3	377.199777	1128.5775	-0.15051	-5.6774E-05	-1.2143	-0.00045803	-1.3648	-0.00051481	377.2001881526476	60.004	0.25143	60.751	60.603	60.855	0.74714					6	4	2	0	0	0	0.92199	1	22680	22680		7.4771	0	1	271730			48772	12832	35465	35751	47668	47668					0.01835618775430703
SKLTRQGELI	10	Unmodified	_SKLTRQGELI_					0	0	0			REV__ENSG00000283428|ENST00000638102|CCDC195	REV__ENSG00000283428|ENST00000638102|CCDC195	MULTI-SECPEP	A375_MHC_IP_R2	2	573.2372436523438	2	572.837862	1143.66117	-0.064654	-3.7036E-05	-0.20441	-0.00011709	-0.26907	-0.00015413	572.8376821991299	141.68	1.1284	141.72	140.85	141.98	0.038376					34	21	2	0	0	0	0.94707	1	55429	55429		3.2813	0.28607	1	745380	+		48773	22995	35466	35752	47669	47669					0.09508774943151366
SKLTRQGELI	10	Unmodified	_SKLTRQGELI_					0	0	0			REV__ENSG00000283428|ENST00000638102|CCDC195	REV__ENSG00000283428|ENST00000638102|CCDC195	MULTI-MATCH	A375_MHC_IP_R1	1		2	572.837862	1143.66117	-0.6023	-0.00034502	-0.21065	-0.00012067	-0.81295	-0.00046569	572.8377116277481	141.7	1.0225	141.7	140.96	141.98	0	-0.011149	-3.7596E-06	NaN	3.2813	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	617390	+		48774	22995	35466	35752							0.09508774943151366
SKMCKMITED	10	Unmodified	_SKMCKMITED_					0	0	0		ENSG00000103888|ENST00000394685|CEMIP;nc|ENSG00000103888|Q8WUJ3-2|CEMIP	ENSG00000103888|ENST00000394685|CEMIP	ENSG00000103888|ENST00000394685|CEMIP	MULTI-SECPEP	A375_MHC_IP_R1	1	396.2654113769531	3	395.848594	1184.52395	-0.31744	-0.00012566	-0.62659	-0.00024804	-0.94403	-0.00037369	395.84865774016447	23.866	0.71138	23.866	23.533	24.245	0					30	13	4	0	0	0	0.92199	1	6737	6737		10.899	10.899	1	9495200			48775	2473	35467	35753	47670	47670					-0.060929613146299744
SKMIILAH	8	Unmodified	_SKMIILAH_					0	0	0		tr|U7SVT1|U7SVT1_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01329PE=4SV=1	tr|U7SVT1|U7SVT1_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01329PE=4SV=1	tr|U7SVT1|U7SVT1_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01329PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	912.5844116210938	1	912.533535	911.526258	0.068705	6.2696E-05	-1.0106	-0.00092222	-0.94191	-0.00085953	912.5335196908113	117.2	2.2327	117.2	116.14	118.37	0					61	43	2	0	0	0	0.972	1	42808	42808		0.6015	0	1	33502000			48776	29797	35468	35754	47671	47671					0.06695623267683004
SKMVTLHRM	9	Unmodified	_SKMVTLHRM_					0	0	0		nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000562200.5_1_16:70543798-70557434:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4	nc|ENSG00000103051|Q9H9E3|COG4	nc|ENSG00000103051|Q9H9E3|COG4	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2105102539062	2	551.796629	1101.5787	-0.69694	-0.00038457	0.99487	0.00054897	0.29793	0.0001644	551.7986915050564	84.134	0.85811	84.134	83.533	84.391	0					27	16	3	0	0	0	0.46045	1	30822	30822		36.127	11.136	1	1087500			48777	2415	35469	35755	47672	47672					0.03197838338996917
SKNKCLYLC	9	Unmodified	_SKNKCLYLC_					0	0	0			REV__ENST00000484563.1_1_1:109955082-109955178:-|nuORF	REV__ENST00000484563.1_1_1:109955082-109955178:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1071.1165771484375	1	1071.53255	1070.52527	0.42399	0.00045432	0.2311	0.00024763	0.65509	0.00070195	1071.5331715620525	116.46	1.8283	116.46	115.58	117.41	0					54	35	2	0	0	0	0.75466	1	42596	42596		7.9102	0	1	35092000	+		48778	25301	35470	35756	47673	47673					-0.0071695916353746725
SKPPGVAL	8	Unmodified	_SKPPGVAL_					0	0	0		nc|ENSG00000100146|P56693|SOX10;chr22:37984441-37987345|453|15.29|0.34|5.48|-|ENST00000360880|SOX10,SOX10	nc|ENSG00000100146|P56693|SOX10	nc|ENSG00000100146|P56693|SOX10	MULTI-SECPEP	A375_MHC_IP_R1	1	385.134521484375	2	384.734346	767.454139	0.33826	0.00013014	0.14338	5.5165E-05	0.48165	0.00018531	384.73432037236137	34.992	0.71171	34.992	34.657	35.369	0					25	13	3	0	0	0	0.40488	1	11574	11574		48.346	0	1	8241300			48779	471	35471	35757	47674	47674					0.06111032185606291
SKPPGVAL	8	Unmodified	_SKPPGVAL_					0	0	0		nc|ENSG00000100146|P56693|SOX10;chr22:37984441-37987345|453|15.29|0.34|5.48|-|ENST00000360880|SOX10,SOX10	nc|ENSG00000100146|P56693|SOX10	nc|ENSG00000100146|P56693|SOX10	MULTI-MSMS	A375_MHC_IP_R2	2	768.41064453125	1	768.461416	767.454139	-0.86635	-0.00066576	0.23496	0.00018056	-0.63139	-0.0004852	768.4615261267462	48.272	0.65364	49.03	48.678	49.332	0.75736					21	12	2	0	0	0	0.47739	1	18151	18151		49.933	11.782	1	3976900			48780	471	35471	35757	47675	47675					0.06111032185606291
SKQAVLSP	8	Unmodified	_SKQAVLSP_					0	0	0			REV__ENST00000459741.5_1_21:45508322-45508496:+|nuORF	REV__ENST00000459741.5_1_21:45508322-45508496:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	829.8775634765625	1	829.477794	828.470518	-0.71919	-0.00059656	1.4285	0.0011849	0.70934	0.00058838	829.4787125004478	144.49	0.11375	144.49	144.43	144.55	0					8	4	2	0	0	0	0.7781	1	55416	55416		1.8442	0	1	818530	+		48781	24953	35472	35758	47676	47676					0.049421133517171256
SKQAVLSP	8	Unmodified	_SKQAVLSP_					0	0	0			REV__ENST00000459741.5_1_21:45508322-45508496:+|nuORF	REV__ENST00000459741.5_1_21:45508322-45508496:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	829.477794	828.470518	-0.71919	-0.00059656	1.4285	0.0011849	0.70934	0.00058838	829.4787125004478	144.49	0.11375	144.49	144.43	144.55	0	-0.024523	-0.00038261	NaN	1.8442	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	818530	+		48782	24953	35472	35758							0.049421133517171256
SKQAVLSP	8	Unmodified	_SKQAVLSP_					0	0	0			REV__ENST00000459741.5_1_21:45508322-45508496:+|nuORF	REV__ENST00000459741.5_1_21:45508322-45508496:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	829.477794	828.470518	-0.58516	-0.00048538	2.2517	0.0018677	1.6665	0.0013823	829.4792744192388	144.52	0.14938	144.54	144.46	144.61	0.024414	0.024523	0.00030016	NaN	1.8442	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	903320	+		48783	24953	35472	35758							0.049421133517171256
SKQDVLCGFLL	11	Unmodified	_SKQDVLCGFLL_					0	0	0		ENSG00000073670|ENST00000200557|ADAM11	ENSG00000073670|ENST00000200557|ADAM11	ENSG00000073670|ENST00000200557|ADAM11	MSMS	A375_MHC_IP_R1	1	611.75634765625	2	611.828649	1221.64274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.66	1	127.66	127.16	128.16	0								0	0	0	0.16203	1	48970	48970		8.1555	0	1				48784	1566	35473	35759	47677	47677					0.04078896976920987
SKQFHYIEY	9	Unmodified	_SKQFHYIEY_					0	0	0			REV__ENST00000331536.7_1_7:87011292-87011459:+|nuORF	REV__ENST00000331536.7_1_7:87011292-87011459:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	607.174560546875	2	607.795663	1213.57677	-0.26109	-0.00015869	1.7959	0.0010915	1.5348	0.00093284	608.2982935331709	93.932	0.7079	94.677	94.211	94.919	0.74474					16	13	2	0	0	0	0.75466	1	35643	35643		12.532	3.7861	1	2950200	+		48785	23631	35474	35760	47678	47678					-0.021471758736424817
SKQNGEPDSY	10	Unmodified	_SKQNGEPDSY_					0	0	0			REV__ENSG00000197584|ENST00000452583|KCNMB2	REV__ENSG00000197584|ENST00000452583|KCNMB2	MULTI-MSMS	A375_MHC_IP_R2	2	562.6685180664062	2	562.746367	1123.47818	-0.46006	-0.0002589	-0.45633	-0.0002568	-0.91639	-0.0005157	563.2468868557021	69.474	0.66074	70.208	69.879	70.54	0.73421					18	12	2	0	0	0	0.69833	1	26388	26388		13.042	0.80181	1	1731900	+		48786	22301	35475	35761	47679	47679					-0.07861823909320265
SKQQDLYKPQY	11	Unmodified	_SKQQDLYKPQY_					0	0	0			REV__ENST00000505686.5_1_5:123974904-123985368:-|nuORF	REV__ENST00000505686.5_1_5:123974904-123985368:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	467.10028076171875	3	466.573503	1396.69868	-0.26874	-0.00012539	-0.30464	-0.00014214	-0.57338	-0.00026753	466.573377385228	61.611	0.40643	61.611	61.331	61.737	0					12	7	2	0	0	0	0.99916	1	22127	22127		4.4062	0	1	1390900	+		48787	20895	35476	35762	47680	47680					0.016198214180803916
SKQTIRREQWY	11	Unmodified	_SKQTIRREQWY_					0	0	0		ENST00000554360.5_1_14:58732325-58732409:-|nuORF	ENST00000554360.5_1_14:58732325-58732409:-|nuORF	ENST00000554360.5_1_14:58732325-58732409:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	499.64483642578125	3	498.931913	1493.77391	-0.76923	-0.0003838	-2.0379	-0.0010168	-2.8072	-0.0014006	498.9313691806978	30.066	0.20229	30.784	30.658	30.86	0.71857					5	3	2	0	0	0	1.0014	1	10533	10533		0.50596	0.41111	1	905900			48788	13418	35477	35763	47681	47681					0.04677423669181735
SKRDAPIF	8	Unmodified	_SKRDAPIF_					0	0	0			REV__nc|ENSG00000211778|A0A0B4J268|TRAV4	REV__nc|ENSG00000211778|A0A0B4J268|TRAV4	MULTI-MSMS	A375_MHC_IP_R1	1	467.6609191894531	2	467.261259	932.507966	-0.17592	-8.2201E-05	-0.15465	-7.2263E-05	-0.33057	-0.00015446	467.2609989169052	51.26	0.65925	51.26	50.966	51.625	0					18	12	2	0	0	0	0.68328	1	18190	18190		39.957	3.8303	1	3576700	+		48789	27475	35478	35764	47682	47682					0.039012046173297676
SKRDAPIF	8	Unmodified	_SKRDAPIF_					0	0	0			REV__nc|ENSG00000211778|A0A0B4J268|TRAV4	REV__nc|ENSG00000211778|A0A0B4J268|TRAV4	MULTI-SECPEP	A375_MHC_IP_R2	2	467.6974182128906	2	467.261259	932.507966	-0.81332	-0.00038003	0.45678	0.00021344	-0.35654	-0.0001666	467.26140142266394	50.278	0.55722	51.032	50.753	51.311	0.75406					23	10	3	0	0	0	0.8957	1	18906	18906		15.847	0	1	2649000	+		48790	27475	35478	35764	47683	47683					0.039012046173297676
SKRDAPIF	8	Unmodified	_SKRDAPIF_					0	0	0			REV__nc|ENSG00000211778|A0A0B4J268|TRAV4	REV__nc|ENSG00000211778|A0A0B4J268|TRAV4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	467.261259	932.507966	-0.17592	-8.2201E-05	-0.15465	-7.2263E-05	-0.33057	-0.00015446	467.2609989169052	51.26	0.65925	51.26	50.966	51.625	0	0.11407	-0.00046297	NaN	39.957	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3576700	+		48791	27475	35478	35764							0.039012046173297676
SKRFTELVLD	10	Unmodified	_SKRFTELVLD_					0	0	0			REV__ENSG00000162571|ENST00000379289|TTLL10	REV__ENSG00000162571|ENST00000379289|TTLL10	MULTI-MSMS	A375_MHC_IP_R1	1	604.7377319335938	2	604.337695	1206.66084	-0.67488	-0.00040785	0.36955	0.00022333	-0.30533	-0.00018452	604.3380102158179	67.424	1.1219	67.424	66.632	67.754	0					42	21	3	0	0	0	0.21149	1	24396	24396		63.961	12.545	1	18533000	+		48792	20267	35479	35765	47684	47684					0.06577355223271297
SKRIFARG	8	Unmodified	_SKRIFARG_					0	0	0			REV__ENSG00000245680|ENST00000532828|ZNF585B	REV__ENSG00000245680|ENST00000532828|ZNF585B	MULTI-MSMS	A375_MHC_IP_R1	1	934.95751953125	1	934.55811	933.550834	-0.38426	-0.00035911	0.049412	4.6179E-05	-0.33485	-0.00031293	934.5581237691831	144.48	0.15788	144.48	144.35	144.51	0					9	5	2	0	0	0	0.77804	1	55405	55405		2.0598	1.2661	1	536680	+		48793	22242	35480	35766	47685	47685					0.08140019465417936
SKRIFARG	8	Unmodified	_SKRIFARG_					0	0	0			REV__ENSG00000245680|ENST00000532828|ZNF585B	REV__ENSG00000245680|ENST00000532828|ZNF585B	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	934.55811	933.550834	-0.38426	-0.00035911	0.049412	4.6179E-05	-0.33485	-0.00031293	934.5581237691831	144.48	0.15788	144.48	144.35	144.51	0	-0.015402	5.5755E-05	NaN	2.0598	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	536680	+		48794	22242	35480	35766							0.08140019465417936
SKRIFARG	8	Unmodified	_SKRIFARG_					0	0	0			REV__ENSG00000245680|ENST00000532828|ZNF585B	REV__ENSG00000245680|ENST00000532828|ZNF585B	MULTI-MATCH	A375_MHC_IP_R2	2		1	934.55811	933.550834	-0.057079	-5.3344E-05	-0.045064	-4.2115E-05	-0.10214	-9.5458E-05	934.5579821557698	144.49	0.14798	144.51	144.42	144.57	0.024414	0.015402	-3.2538E-05	NaN	2.0598	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	584370	+		48795	22242	35480	35766							0.08140019465417936
SKRIIKDHY	9	Unmodified	_SKRIIKDHY_					0	0	0		nc|ENSG00000278023|Q8NG50-7|RDM1;nc|ENSG00000278023|Q8NG50-4|RDM1;nc|ENSG00000278023|Q8NG50-3|RDM1	nc|ENSG00000278023|Q8NG50-7|RDM1	nc|ENSG00000278023|Q8NG50-7|RDM1	MULTI-MSMS	A375_MHC_IP_R1	1	387.5999450683594	3	387.224257	1158.65094	-0.089147	-3.452E-05	0.092827	3.5945E-05	0.0036799	1.425E-06	387.22431481668195	26.489	1.2642	26.489	25.664	26.928	0					32	24	2	0	0	0	0.7235	2	7690	7690;7758		4.897	1.0207	1	5874000			48796	14941	35481	35767	47686;47687	47686					0.07796212008565817
SKRKGKKKK	9	Unmodified	_SKRKGKKKK_					0	0	0			REV__ENSG00000124177|ENST00000373233|CHD6	REV__ENSG00000124177|ENST00000373233|CHD6	MSMS	A375_MHC_IP_R2	2	363.28521728515625	3	363.252258	1086.73495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.3	1	32.018	31.518	32.518	0.71857								0	0	0	0.15486	1	11056	11056		0.18151	0	1		+		48797	18278	35482	35768	47688	47688					0.19504787896130438
SKRKKRKK	8	Unmodified	_SKRKKRKK_					0	0	0			REV__PCDH9|p.P877S|3|0.25|ENSG00000184226|chr13:67225812-67225812|G/A|missense_variant	REV__PCDH9|p.P877S|3|0.25|ENSG00000184226|chr13:67225812-67225812|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	1059.3984375	1	1058.72691	1057.71963	0.26446	0.00027999	-3.8604	-0.0040871	-3.5959	-0.0038071	1058.7242658363514	111.91	0.66197	112.63	112.56	113.22	0.72458					17	12	2	0	0	0	0.972	1	42356	42356		0.6015	0	1	5244700	+		48798	18649	35483	35769	47689	47689					0.19307921098925362
SKRKLKPL	8	Unmodified	_SKRKLKPL_					0	0	0			REV__ENSG00000109436|ENST00000442267|TBC1D9	REV__ENSG00000109436|ENST00000442267|TBC1D9	MULTI-SECPEP	A375_MHC_IP_R1	1	969.9713745117188	1	969.656761	968.649485	-0.44483	-0.00043133	-3.1821	-0.0030855	-3.6269	-0.0035169	969.6554729383816	122.75	0.55327	122.75	122.58	123.13	0					14	10	2	0	0	0	0.972	1	45688	45688		0.6015	0	1	102570000	+		48799	17578	35484	35770	47690	47690					0.16390622710446223
SKRKSKDKKRK	11	Unmodified	_SKRKSKDKKRK_					0	0	0		ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2;ENST00000571372.1_1_16:2809069-2809404:+|nuORF;ENST00000570655.1_1_16:2809069-2809663:+|nuORF;nc|ENSG00000167978|Q9UQ35-3|SRRM2;SRRM2|p.A1488Sfs*4|1|0.22|ENSG00000167978|chr16:2764990-2764997|GCTTTGCC/-|frameshift_variant	ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	MSMS	A375_MHC_IP_R2	2	695.34326171875	2	694.944059	1387.87356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.14	1	144.16	143.66	144.66	0.024414								0	0	0	0.1636	1	56310	56310		0	0	1				48800	7245	35485	35771	47691	47691					0.19514286073763287
SKRTSLLAKL	10	Unmodified	_SKRTSLLAKL_					0	0	0		ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	MULTI-MSMS	A375_MHC_IP_R1	1	372.9522705078125	3	372.908157	1115.70264	0.24739	9.2252E-05	-0.10753	-4.0098E-05	0.13986	5.2154E-05	372.9080643069663	33.197	1.1144	33.197	32.887	34.001	0					36	21	3	0	0	0	0.71076	1	10708	10708		7.4771	2.5801	1	30452000			48801	8922	35486	35772	47692	47692					0.14941955702465748
SKRTSLLAKL	10	Unmodified	_SKRTSLLAKL_					0	0	0		ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	MULTI-SECPEP	A375_MHC_IP_R2	2	558.7244262695312	2	558.858598	1115.70264	-0.71383	-0.00039893	-0.34432	-0.00019243	-1.0582	-0.00059136	558.8582932378403	32.129	0.30553	32.866	32.654	32.96	0.73692					9	5	2	0	0	0	0.92514	1	11422	11422		8.1555	4.559	1	1301100			48802	8922	35486	35772	47693	47693					0.14941955702465748
SKSWPVQCSP	10	Unmodified	_SKSWPVQCSP_					0	0	0			REV__ENST00000421966.1_1_2:103347496-103353100:-|nuORF	REV__ENST00000421966.1_1_2:103347496-103353100:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	373.2685852050781	3	373.51482	1117.52263	0.079511	2.9699E-05	0.37274	0.00013923	0.45226	0.00016892	373.51493655431955	39.695	0.35431	39.695	39.491	39.845	0					11	6	2	0	0	0	0.92227	1	13580	13580		5.0475	0.93089	1	2824700	+		48803	24598	35487	35773	47694	47694					-0.031430912968289704
SKSWPVQCSP	10	Unmodified	_SKSWPVQCSP_					0	0	0			REV__ENST00000421966.1_1_2:103347496-103353100:-|nuORF	REV__ENST00000421966.1_1_2:103347496-103353100:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	373.2681884765625	3	373.51482	1117.52263	0.13709	5.1204E-05	0.22024	8.2263E-05	0.35733	0.00013347	373.5148399010289	38.932	0.51258	39.706	39.351	39.863	0.77451					16	9	3	0	0	0	0.93405	1	14271	14271		2.8433	0	1	2694100	+		48804	24598	35487	35773	47695	47695					-0.031430912968289704
SKTHTAVK	8	Unmodified	_SKTHTAVK_					0	0	0		ENSG00000116984|ENST00000366577|MTR;nc|ENSG00000116984|Q99707-2|MTR	ENSG00000116984|ENST00000366577|MTR	ENSG00000116984|ENST00000366577|MTR	MSMS	A375_MHC_IP_R2	2	436.64813232421875	2	436.253434	870.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.57	1	142.6	142.1	143.1	0.030731								0	0	0	0.16876	1	55735	55735		4.3292	0.38484	1				48805	3448	35488	35774	47696	47696					0.05188918100270712
SKTLGKLW	8	Unmodified	_SKTLGKLW_					0	0	0		nc|ENSG00000100146|P56693|SOX10;chr22:37984441-37987345|453|15.29|0.34|5.48|-|ENST00000360880|SOX10,SOX10;nc|ENSG00000100146|P56693-2|SOX10;ENSG00000125398|ENST00000245479|SOX9;ENST00000566034.1_1_16:1032135-1032345:+|nuORF;chr22:37978652-37983357|327|20.16|0.62|5.03|-|1|SOX10,SOX10|1;ENSG00000005513|ENST00000293894|SOX8	nc|ENSG00000100146|P56693|SOX10;ENSG00000005513|ENST00000293894|SOX8	nc|ENSG00000100146|P56693|SOX10	MSMS	A375_MHC_IP_R2	2	466.6651611328125	2	466.781828	931.549102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.621	1	55.371	54.871	55.871	0.75075								0	0	0	0.16876	1	20615	20615		13.906	1.3745	1				48806	471;897	35489	35775	47697	47697					0.08058965656789496
SKTRKVQSTA	10	Unmodified	_SKTRKVQSTA_					0	0	0		nc|ENSG00000172661|Q9Y4E1-5|WASHC2C;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C	nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	MULTI-SECPEP	A375_MHC_IP_R1	1	369.93951416015625	3	369.21565	1104.62512	0.38891	0.00014359	3.4088	0.0012586	3.7977	0.0014022	369.55172940108963	35.141	0.35589	35.141	34.963	35.319	0					9	6	2	0	0	0	0.93194	1	11619	11619		5.4027	0.5057	1	1334800			48807	7728	35490	35776	47698	47698					0.07699317766287095
SKVKLRIR	8	Unmodified	_SKVKLRIR_					0	0	0		MAB21L1|p.E157K|1|0.39|ENSG00000180660|chr13:35475670-35475670|C/T|missense_variant	MAB21L1|p.E157K|1|0.39|ENSG00000180660|chr13:35475670-35475670|C/T|missense_variant	MAB21L1|p.E157K|1|0.39|ENSG00000180660|chr13:35475670-35475670|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	500.7423400878906	2	500.342918	998.671283	-0.73408	-0.00036729	-0.68152	-0.000341	-1.4156	-0.00070829	500.3429244540214	147.82	0.69136	147.82	147.67	148.36	0					53	27	3	0	0	0	0.77861	1	56448	56448		0	0	1	200040			48808	14337	35491	35777	47699	47699					0.1718942745901586
SKVLEEKHL	9	Unmodified	_SKVLEEKHL_					0	0	0		tr|U7SQT9|U7SQT9_FUSNUNicotinatephosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01795PE=3SV=1	tr|U7SQT9|U7SQT9_FUSNUNicotinatephosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01795PE=3SV=1	tr|U7SQT9|U7SQT9_FUSNUNicotinatephosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01795PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	361.2569274902344	3	361.544996	1081.61316	-0.02384	-8.6194E-06	1.0979	0.00039693	1.074	0.00038831	361.5453624640336	24.328	0.45565	24.328	24.092	24.547	0					17	8	3	0	0	0	0.69507	1	6775	6775		6.1918	0	1	4314200			48809	29598	35492	35778	47700	47700					0.07561701023087153
SKVVLGLSV	9	Unmodified	_SKVVLGLSV_					0	0	0		ENSG00000232838|ENST00000432901|PET117	ENSG00000232838|ENST00000432901|PET117	ENSG00000232838|ENST00000432901|PET117	MULTI-MSMS	A375_MHC_IP_R2	2	451.6893005371094	2	451.289485	900.564418	-0.30258	-0.00013655	-0.20034	-9.0411E-05	-0.50292	-0.00022696	451.28933222951935	64.965	0.55722	65.703	65.41	65.968	0.73811					22	10	3	0	0	0	0.054426	1	24612	24612		62.573	0	1	4599900			48810	9731	35493	35779	47701	47701					0.11015832453983876
SKYPGLIKV	9	Unmodified	_SKYPGLIKV_					0	0	0		ENSG00000149633|ENST00000279024|KIAA1755	ENSG00000149633|ENST00000279024|KIAA1755	ENSG00000149633|ENST00000279024|KIAA1755	MULTI-SECPEP	A375_MHC_IP_R1	1	503.21038818359375	2	502.810585	1003.60662	-0.14805	-7.4439E-05	0.29742	0.00014955	0.14937	7.5106E-05	502.81053502829224	45.611	0.40352	45.611	45.334	45.738	0					14	7	3	0	0	0	0.37663	1	15993	15993		36.506	14.76	1	3336600			48811	5821	35494	35780	47702	47702					0.10495807862389483
SKYPGLIKV	9	Unmodified	_SKYPGLIKV_					0	0	0		ENSG00000149633|ENST00000279024|KIAA1755	ENSG00000149633|ENST00000279024|KIAA1755	ENSG00000149633|ENST00000279024|KIAA1755	MULTI-SECPEP	A375_MHC_IP_R2	2	503.21014404296875	2	502.810585	1003.60662	-0.73575	-0.00036994	0.14455	7.2681E-05	-0.5912	-0.00029726	502.8105101117337	44.634	0.35466	45.403	45.188	45.543	0.76909					11	6	2	0	0	0	0.54812	1	16711	16711		19.362	9.9788	1	2459800			48812	5821	35494	35780	47703	47703					0.10495807862389483
SKYRVPNLLD	10	Unmodified	_SKYRVPNLLD_					0	0	0		ENSG00000100526|ENST00000335183|CDKN3;nc|ENSG00000100526|Q16667-2|CDKN3	ENSG00000100526|ENST00000335183|CDKN3	ENSG00000100526|ENST00000335183|CDKN3	MULTI-SECPEP	A375_MHC_IP_R1	1	401.9525146484375	3	402.227667	1203.66117	-0.19669	-7.9114E-05	0.80484	0.00032373	0.60815	0.00024461	402.5622048783755	51.702	0.25361	51.702	51.525	51.778	0					10	4	3	0	0	0	0.92055	1	18338	18338		16.275	0.13737	1	1181300			48813	2189	35495	35781	47704	47704					0.06748774943139324
SKYWCYRMLS	10	Unmodified	_SKYWCYRMLS_					0	0	0		CAV3|p.L75M|1|0.33|ENSG00000182533|chr3:8745634-8745634|C/A|missense_variant	CAV3|p.L75M|1|0.33|ENSG00000182533|chr3:8745634-8745634|C/A|missense_variant	CAV3|p.L75M|1|0.33|ENSG00000182533|chr3:8745634-8745634|C/A|missense_variant	MSMS	A375_MHC_IP_R1	1	668.7775268554688	2	668.812476	1335.6104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.89	1	142.89	142.39	143.39	0								0	0	0	0.15465	1	54824	54824		5.7319	0.43497	1				48814	300	35496	35782	47705	47705					-0.0439821369773199
SLAAGWGLY	9	Unmodified	_SLAAGWGLY_					0	0	0		ENST00000264963.8_2_2:97372767-97372965:-|nuORF	ENST00000264963.8_2_2:97372767-97372965:-|nuORF	ENST00000264963.8_2_2:97372767-97372965:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	469.12664794921875	2	469.242535	936.470518	0.075129	3.5254E-05	-0.2669	-0.00012524	-0.19177	-8.9986E-05	469.2422117446104	69.332	0.45782	69.332	68.969	69.427	0					12	8	2	0	0	0	0.67221	1	25174	25174		8.5933	0	1	829360			48815	10341	35497	35783	47706	47706					-0.00025886648290907033
SLAALLLDQG	10	Unmodified	_SLAALLLDQG_					0	0	0			REV__nc|ENSG00000139697|A3KN83-3|SBNO1	REV__nc|ENSG00000139697|A3KN83-3|SBNO1	MSMS	A375_MHC_IP_R1	1	500.725341796875	2	500.787307	999.560061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.38	1	134.38	133.88	134.88	0								0	0	0	0.14601	1	51822	51822		25.399	1.3787	1		+		48816	19173	35498	35784	47707	47707					0.06026323240428155
SLAANTFTI	9	Unmodified	_SLAANTFTI_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	A375_MHC_IP_R1	1	469.6530456542969	2	469.2531	936.491647	-0.32415	-0.00015211	0.37217	0.00017464	0.048017	2.2532E-05	469.25321076908426	96.197	0.61197	96.197	95.917	96.529	0					17	11	2	0	0	0	0.25276	1	35408	35408		34.102	9.4286	1	1604500			48817	5578	35499	35785	47708	47708					0.0208607866057946
SLAANTFTI	9	Unmodified	_SLAANTFTI_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	A375_MHC_IP_R2	2	469.65277099609375	2	469.2531	936.491647	-0.40509	-0.00019009	-0.64615	-0.00030321	-1.0512	-0.0004933	469.25311105479096	95.28	0.5621	96.03	95.785	96.347	0.75044					24	10	3	0	0	0	0.25276	1	36222	36222		34.102	7.2188	1	1439200			48818	5578	35499	35785	47709	47709					0.0208607866057946
SLAAWLTDAR	10	Unmodified	_SLAAWLTDAR_					0	0	0		ENSG00000167578|ENST00000357052|RAB4B;nc|ENSG00000167578|P61018-2|RAB4B;ENST00000597476.5_1_19:41285769-41292865:+|nuORF	ENSG00000167578|ENST00000357052|RAB4B	ENSG00000167578|ENST00000357052|RAB4B	MULTI-SECPEP	A375_MHC_IP_R1	1	368.9330749511719	3	368.532979	1102.57711	0.30134	0.00011105	0.66108	0.00024363	0.96242	0.00035468	368.5331782034557	59.966	0.56034	59.966	59.599	60.159	0					19	10	3	0	0	0	0.92957	1	21578	21578		3.3196	0.82116	1	2313500			48819	7197	35500	35786	47710	47710					0.029922438462108403
SLADDSVLERL	11	Unmodified	_SLADDSVLERL_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	A375_MHC_IP_R1	1	610.3627319335938	2	609.322242	1216.62993	-0.48436	-0.00029513	-0.22457	-0.00013683	-0.70893	-0.00043197	609.3222648589054	90.275	0.45609	90.275	89.981	90.437	0					20	8	3	0	0	0	0.71717	1	33154	33154		14.218	4.1442	1	3176500			48820	3055	35501	35787	47711	47711					0.03028157118387753
SLADDSVLERL	11	Unmodified	_SLADDSVLERL_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	A375_MHC_IP_R2	2	609.7222900390625	2	609.322242	1216.62993	-0.37036	-0.00022567	-0.76233	-0.0004645	-1.1327	-0.00069018	609.3216701608843	89.545	0.50658	90.276	89.936	90.442	0.7318					20	9	3	0	0	0	0.72028	1	34059	34059		35.08	16.707	1	3088400			48821	3055	35501	35787	47712	47712					0.03028157118387753
SLADFMQEV	9	Unmodified	_SLADFMQEV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q831Sfs*11|1|0.38|ENSG00000125107|chr16:58555897-58555898|-/A|frameshift_variant	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	A375_MHC_IP_R1	1	1039.8587646484375	1	1039.47647	1038.4692	0.28427	0.00029549	0.44395	0.00046147	0.72822	0.00075696	1039.4777391691603	125.88	0.2494	125.88	125.75	126	0					6	4	2	0	0	0	0.0096896	1	47960	47960		110.67	57.099	1	13538000			48822	3941	35502	35788	47713	47713					-0.04849888799344626
SLADIAQKL	9	Unmodified	_SLADIAQKL_					0	0	0		ENST00000485835.1_1_17:38151035-38151804:+|nuORF;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENSG00000108344|ENST00000264639|PSMD3	ENST00000485835.1_1_17:38151035-38151804:+|nuORF	ENST00000485835.1_1_17:38151035-38151804:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	480.1817321777344	2	479.782025	957.549496	-0.51795	-0.0002485	-0.13115	-6.2926E-05	-0.64911	-0.00031143	479.78199634819777	81.025	0.91386	81.025	80.693	81.607	0					35	17	3	0	0	0	0.27742	1	29570	29570		51.63	17.228	1	7169700			48823	2793	35503	35789	47714	47714					0.06902340586009359
SLADIAQKL	9	Unmodified	_SLADIAQKL_					0	0	0		ENST00000485835.1_1_17:38151035-38151804:+|nuORF;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENSG00000108344|ENST00000264639|PSMD3	ENST00000485835.1_1_17:38151035-38151804:+|nuORF	ENST00000485835.1_1_17:38151035-38151804:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	480.18133544921875	2	479.782025	957.549496	-0.54783	-0.00026284	-0.4198	-0.00020141	-0.96764	-0.00046425	479.78182361643144	80.13	0.80943	80.875	80.607	81.416	0.74473					31	15	3	0	0	0	0.070665	1	30407	30407		51.63	24.001	1	6034400			48824	2793	35503	35789	47715	47715					0.06902340586009359
SLADLIFREW	10	Unmodified	_SLADLIFREW_					0	0	0		NLRP4|p.S206F|2|0.25|ENSG00000160505|chr19:55858010-55858010|C/T|missense_variant	NLRP4|p.S206F|2|0.25|ENSG00000160505|chr19:55858010-55858010|C/T|missense_variant	NLRP4|p.S206F|2|0.25|ENSG00000160505|chr19:55858010-55858010|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	417.62384033203125	3	417.224034	1248.65027	0.21568	8.9988E-05	-0.42535	-0.00017746	-0.20966	-8.7477E-05	417.223771292079	55.304	0.559	55.304	55.025	55.584	0					22	10	3	0	0	0	0.33265	1	19771	19771		32.898	20.723	1	4074200			48825	15006	35504	35790	47716	47716					0.035893725688538325
SLADLIFREW	10	Unmodified	_SLADLIFREW_					0	0	0		NLRP4|p.S206F|2|0.25|ENSG00000160505|chr19:55858010-55858010|C/T|missense_variant	NLRP4|p.S206F|2|0.25|ENSG00000160505|chr19:55858010-55858010|C/T|missense_variant	NLRP4|p.S206F|2|0.25|ENSG00000160505|chr19:55858010-55858010|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	417.224034	1248.65027	-0.2894	-0.00012074	-0.16107	-6.7202E-05	-0.45047	-0.00018795	417.22395001024506	54.322	0.55582	55.073	54.814	55.37	0.75075	-0.11566	0.00012554	NaN	32.898	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2846800			48826	15006	35504	35790							0.035893725688538325
SLADLMPRV	9	Unmodified	_SLADLMPRV_					0	0	0		ENSG00000039123|ENST00000230640|MTREX;ENST00000504388.5_1_5:54603829-54620403:+|nuORF;ENST00000503165.5_1_5:54603841-54625205:+|nuORF	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	A375_MHC_IP_R1	1	501.6753234863281	2	501.276052	1000.53755	-0.32724	-0.00016404	-0.0019319	-9.684E-07	-0.32917	-0.000165	501.2760583760728	102.41	1.1152	102.41	101.95	103.06	0					50	19	3	0	0	0	0.02559	1	37570	37570		78.728	26.46	1	8305600			48827	1156	35505	35791	47717	47717					0.03730400571168957
SLADLMPRV	9	Unmodified	_SLADLMPRV_					0	0	0		ENSG00000039123|ENST00000230640|MTREX;ENST00000504388.5_1_5:54603829-54620403:+|nuORF;ENST00000503165.5_1_5:54603841-54625205:+|nuORF	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	A375_MHC_IP_R2	2	501.6758117675781	2	501.276052	1000.53755	-0.51446	-0.00025789	0.19853	9.9519E-05	-0.31593	-0.00015837	501.27619527549456	101.51	1.0187	102.27	101.7	102.72	0.76428					45	19	3	0	0	0	0.029064	1	38407	38407		75.761	29.74	1	9381900			48828	1156	35505	35791	47718	47718					0.03730400571168957
SLADLMPRV	9	Oxidation (M)	_SLADLM(Oxidation (M))PRV_		SLADLM(1)PRV		SLADLM(44)PRV	0	0	1		ENSG00000039123|ENST00000230640|MTREX;ENST00000504388.5_1_5:54603829-54620403:+|nuORF;ENST00000503165.5_1_5:54603841-54625205:+|nuORF	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-SECPEP	A375_MHC_IP_R2	2	509.67327880859375	2	509.273509	1016.53247	-0.89608	-0.00045635	-0.41809	-0.00021292	-1.3142	-0.00066927	509.2740167635545	65.484	0.86335	66.222	65.867	66.731	0.73811					37	16	3	0	0	0	0.27742	1	24808	24808		43.772	7.6454	1	6148800			48829	1156	35505	35792	47719	47719		19			0.02486096708560126
SLADLMPRV	9	Oxidation (M)	_SLADLM(Oxidation (M))PRV_		SLADLM(1)PRV		SLADLM(40)PRV	0	0	1		ENSG00000039123|ENST00000230640|MTREX;ENST00000504388.5_1_5:54603829-54620403:+|nuORF;ENST00000503165.5_1_5:54603841-54625205:+|nuORF	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-SECPEP	A375_MHC_IP_R2	2	509.673095703125	2	509.273509	1016.53247	-0.75561	-0.00038481	-0.39708	-0.00020222	-1.1527	-0.00058703	509.2733569845282	64.855	1.2714	65.593	64.646	65.917	0.73811					38	24	3	0	0	0	0.43207	1	24580	24580		40.239	20.982	1	4758600			48830	1156	35505	35792	47720	47720		19			0.02486096708560126
SLADLQNDEV	10	Unmodified	_SLADLQNDEV_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000389400.4_1_10:86320393-86320726:+|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	A375_MHC_IP_R1	1	552.6644897460938	2	552.264393	1102.51423	-0.33688	-0.00018605	1.0892	0.00060153	0.75232	0.00041548	552.2646458517696	72.068	0.65773	72.068	71.765	72.423	0					36	12	5	0	0	0	0.0036544	2	26202	26178;26202		107.1	63.118	1	6490000			48831	5559	35506	35793	47721;47722	47722					-0.032923667324666894
SLADLQNDEV	10	Unmodified	_SLADLQNDEV_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000389400.4_1_10:86320393-86320726:+|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	A375_MHC_IP_R2	2	552.6642456054688	2	552.264393	1102.51423	-1.0565	-0.00058345	1.015	0.00056055	-0.041478	-2.2907E-05	552.2646738801274	71.49	0.70965	72.224	71.857	72.567	0.73421					22	13	2	0	0	0	0.011121	1	27092	27092		110.79	59.378	1	6936300			48832	5559	35506	35793	47723	47723					-0.032923667324666894
SLADLYFRA	9	Unmodified	_SLADLYFRA_					0	0	0		nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7	nc|ENSG00000196510|Q9UJX3-2|ANAPC7	nc|ENSG00000196510|Q9UJX3-2|ANAPC7	MULTI-SECPEP	A375_MHC_IP_R1	1	528.678955078125	2	528.279649	1054.54475	-0.37421	-0.00019769	-1.0035	-0.00053015	-1.3778	-0.00072784	528.2786402067154	92.281	1.469	92.281	91.148	92.617	0					47	28	3	0	0	0	0.41731	1	33881	33881		53.833	30.684	1	9376500			48833	9052	35507	35794	47724	47724					0.0196545644323578
SLADLYFRA	9	Unmodified	_SLADLYFRA_					0	0	0		nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7	nc|ENSG00000196510|Q9UJX3-2|ANAPC7	nc|ENSG00000196510|Q9UJX3-2|ANAPC7	MULTI-SECPEP	A375_MHC_IP_R2	2	528.6784057617188	2	528.279649	1054.54475	-0.42968	-0.00022699	-1.2634	-0.00066741	-1.693	-0.0008944	528.2788362739311	91.545	1.1139	92.279	91.566	92.68	0.73451					41	21	3	0	0	0	0.11887	1	34793	34793		88.954	30.275	1	9051000			48834	9052	35507	35794	47725	47725					0.0196545644323578
SLADQHWDF	9	Unmodified	_SLADQHWDF_					0	0	0			REV__ENSG00000182463|ENST00000371497|TSHZ2	REV__ENSG00000182463|ENST00000371497|TSHZ2	MULTI-SECPEP	A375_MHC_IP_R1	1	559.1400146484375	2	559.748713	1117.48287	-0.19439	-0.00010881	0.48084	0.00026915	0.28644	0.00016034	559.7488561068353	49.646	1.1704	49.646	49.033	50.204	0					45	22	3	0	0	0	0.55359	1	17580	17580		15.847	0	1	6442700	+		48835	21690	35508	35795	47726	47726					-0.07116894975911237
SLADRGEW	8	Unmodified	_SLADRGEW_					0	0	0		ENSG00000243708|ENST00000458483|PLA2G4B;nc|ENSG00000243708|P0C869-8|PLA2G4B;nc|ENSG00000243708|P0C869-7|PLA2G4B;nc|ENSG00000243708|P0C869-6|PLA2G4B;ENST00000461382.5_1_15:42131111-42133534:+|nuORF;ENST00000487292.1_3_15:42132349-42136005:+|nuORF;ENST00000491746.5_1_15:42132349-42135875:+|nuORF;ENST00000490848.5_1_15:42132349-42134687:+|nuORF	ENSG00000243708|ENST00000458483|PLA2G4B	ENSG00000243708|ENST00000458483|PLA2G4B	MULTI-MSMS	A375_MHC_IP_R2	2	467.6244201660156	2	467.224874	932.435195	-0.84779	-0.00039611	-0.29624	-0.00013841	-1.144	-0.00053452	467.2246785392348	41.317	0.40407	42.091	41.845	42.249	0.77451					12	7	2	0	0	0	0.7754	1	15337	15337		11.64	0	1	2281200			48836	9812	35509	35796	47727	47727					-0.03372549176094708
SLADSHTEF	9	Unmodified	_SLADSHTEF_					0	0	0		ENST00000583167.5_1_17:45892556-45892844:-|nuORF;ENSG00000006025|ENST00000007414|OSBPL7	ENST00000583167.5_1_17:45892556-45892844:-|nuORF	ENST00000583167.5_1_17:45892556-45892844:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	504.1998596191406	2	503.727446	1005.44034	-0.59949	-0.00030198	-0.39363	-0.00019828	-0.99312	-0.00050026	503.72748911867603	70.033	0.55976	70.767	70.488	71.048	0.73421					24	10	3	0	0	0	0.64808	1	26653	26653		11.64	4.3511	1	1962500			48837	906	35510	35797	47728	47728					-0.06216290104134714
SLADSLYNL	9	Unmodified	_SLADSLYNL_					0	0	0		nc|ENSG00000118200|Q08AD1-2|CAMSAP2;ENSG00000118200|ENST00000358823|CAMSAP2;nc|ENSG00000118200|Q08AD1|CAMSAP2	nc|ENSG00000118200|Q08AD1-2|CAMSAP2	nc|ENSG00000118200|Q08AD1-2|CAMSAP2	MULTI-MSMS	A375_MHC_IP_R2	2	498.65557861328125	2	498.25584	994.497126	-0.29777	-0.00014836	-0.29359	-0.00014628	-0.59136	-0.00029465	498.2556554239859	113.17	1.024	113.88	113.21	114.23	0.70985					31	19	3	0	0	0	0.0090323	1	42741	42741		99.799	24.87	1	4175000			48838	14563	35511	35798	47729	47729					-0.0003424254761057455
SLADVHIEV	9	Unmodified	_SLADVHIEV_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-SECPEP	A375_MHC_IP_R1	1	492.16290283203125	2	491.763832	981.513111	-0.25168	-0.00012377	-0.48891	-0.00024043	-0.74059	-0.0003642	491.7636003609008	77.878	1.0187	77.878	77.588	78.606	0					51	19	4	0	0	0	0.01091	1	28380	28380		118.89	57.537	1	15913000			48839	2045	35512	35799	47730	47730					0.02161463689287757
SLADYEHFV	9	Unmodified	_SLADYEHFV_					0	0	0		ENSG00000146950|ENST00000380913|SHROOM2	ENSG00000146950|ENST00000380913|SHROOM2	ENSG00000146950|ENST00000380913|SHROOM2	MULTI-MSMS	A375_MHC_IP_R1	1	541.1531372070312	2	540.753464	1079.49238	-0.8352	-0.00045163	1.0572	0.00057171	0.22205	0.00012007	540.7534276966664	85.868	0.50706	85.868	85.565	86.072	0					25	9	4	0	0	0	0.29981	1	31466	31466		30.637	16.231	1	2217500			48840	5647	35513	35800	47731	47731					-0.044191266903681026
SLADYEHFV	9	Unmodified	_SLADYEHFV_					0	0	0		ENSG00000146950|ENST00000380913|SHROOM2	ENSG00000146950|ENST00000380913|SHROOM2	ENSG00000146950|ENST00000380913|SHROOM2	MULTI-MSMS	A375_MHC_IP_R2	2	541.22265625	2	540.753464	1079.49238	-0.69794	-0.00037741	0.29668	0.00016043	-0.40126	-0.00021698	540.7536033703774	85.167	0.76665	85.903	85.472	86.239	0.73601					16	10	2	0	0	0	0.38603	2	32346	32346;32409		25.399	14.6	1	1788400			48841	5647	35513	35800	47732;47733	47732					-0.044191266903681026
SLADYTTGL	9	Unmodified	_SLADYTTGL_					0	0	0			REV__ENSG00000198888|ENST00000361390|MT-ND1	REV__ENSG00000198888|ENST00000361390|MT-ND1	MSMS	A375_MHC_IP_R2	2	470.66619873046875	2	470.73474	939.454927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.502	1	26.146	25.646	26.646	0.64368								0	0	0	0.15283	1	8529	8529		16.942	1.1741	1		+		48842	22441	35514	35801	47734	47734					-0.017222179560008044
SLAEDVLTV	9	Unmodified	_SLAEDVLTV_					0	0	0		nc|ENSG00000101400|Q13424-2|SNTA1;ENSG00000101400|ENST00000217381|SNTA1	nc|ENSG00000101400|Q13424-2|SNTA1	nc|ENSG00000101400|Q13424-2|SNTA1	MULTI-SECPEP	A375_MHC_IP_R2	2	946.3280029296875	1	946.509154	945.501877	-0.14626	-0.00013843	2.686	0.0025423	2.5397	0.0024038	946.5080008148576	103.84	0.30415	104.61	104.4	104.7	0.76428					8	5	2	0	0	0	0.20567	1	39313	39313		46.021	6.0636	1	1256400			48843	2287	35515	35802	47735	47735					0.02694641595144276
SLAEDVLTV	9	Unmodified	_SLAEDVLTV_					0	0	0		nc|ENSG00000101400|Q13424-2|SNTA1;ENSG00000101400|ENST00000217381|SNTA1	nc|ENSG00000101400|Q13424-2|SNTA1	nc|ENSG00000101400|Q13424-2|SNTA1	MULTI-MATCH	A375_MHC_IP_R1	1		1	946.509154	945.501877	0.071663	6.783E-05	2.0478	0.0019382	2.1194	0.0020061	946.5080758059394	104.67	0.20348	104.67	104.54	104.74	0	0.031949	-0.00028038	NaN	46.021	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	748730			48844	2287	35515	35802							0.02694641595144276
SLAEEENFDN	10	Unmodified	_SLAEEENFDN_					0	0	0		ENST00000526769.3_1_11:6735844-6741409:-|nuORF;nc|ENSG00000254838|Q7Z2Y8|GVINP1	ENST00000526769.3_1_11:6735844-6741409:-|nuORF	ENST00000526769.3_1_11:6735844-6741409:-|nuORF	MSMS	A375_MHC_IP_R2	2	584.1969604492188	2	584.243657	1166.47276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.478	1	92.213	91.713	92.713	0.7345								0	0	0	0.15435	1	34796	34796		6.7232	0.99131	1				48845	13088	35516	35803	47736	47736					-0.10381547491783749
SLAEFVQSL	9	Unmodified	_SLAEFVQSL_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;ENST00000567329.1_1_16:8996189-8998378:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	993.8056640625	1	993.525138	992.517862	0.65138	0.00064716	-0.046685	-4.6382E-05	0.6047	0.00060078	993.5249962760754	127.14	0.40455	127.14	126.96	127.37	0					12	7	2	0	0	0	0.0066517	1	48648	48648		165.72	54.433	1	107420000			48846	8836	35517	35804	47737	47737					0.02130347832053303
SLAEFVQSL	9	Unmodified	_SLAEFVQSL_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;ENST00000567329.1_1_16:8996189-8998378:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	497.6661376953125	2	497.266207	992.517862	0.055647	2.7671E-05	-0.64887	-0.00032266	-0.59323	-0.00029499	497.265859323724	127.19	0.50769	127.19	127.01	127.52	0					18	9	3	0	0	0	0.0018976	1	48662	48662		145.13	45.374	1	72518000			48847	8836	35517	35804	47738	47738					0.02130347832053303
SLAEFVQSL	9	Unmodified	_SLAEFVQSL_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;ENST00000567329.1_1_16:8996189-8998378:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	497.6665344238281	2	497.266207	992.517862	-0.47656	-0.00023698	-0.062722	-3.119E-05	-0.53928	-0.00026817	497.26609556020856	126.77	0.55724	127.03	126.85	127.41	0.26592					22	10	4	0	0	0	0.0018976	1	49625	49625		145.13	56.176	1	48912000			48848	8836	35517	35804	47739	47739					0.02130347832053303
SLAEGLRTV	9	Unmodified	_SLAEGLRTV_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-SECPEP	A375_MHC_IP_R1	1	473.6714782714844	2	473.271824	944.529095	-0.07404	-3.5041E-05	0.005409	2.5599E-06	-0.068631	-3.2481E-05	473.27180563210624	49.466	0.65958	49.466	49.134	49.793	0					42	12	5	0	0	0	0.062502	1	17442	17442		74.2	32.244	1	65838000			48849	2985	35518	35805	47740	47740					0.05461169926184084
SLAEGLRTV	9	Unmodified	_SLAEGLRTV_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-SECPEP	A375_MHC_IP_R2	2	473.6716003417969	2	473.271824	944.529095	-0.59046	-0.00027945	-0.142	-6.7204E-05	-0.73246	-0.00034665	473.2717083613021	48.549	0.7607	49.306	48.929	49.69	0.75736					42	14	4	0	0	0	0.20059	1	18177	18177		51.415	0	1	57169000			48850	2985	35518	35805	47741	47741					0.05461169926184084
SLAEGRLY	8	Unmodified	_SLAEGRLY_					0	0	0		nc|ENSG00000135931|Q7Z3E5-2|ARMC9;ENSG00000135931|ENST00000611582|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	MULTI-SECPEP	A375_MHC_IP_R2	2	455.1455078125	2	454.745442	907.476331	-0.0094456	-4.2953E-06	-0.10709	-4.8698E-05	-0.11653	-5.2993E-05	454.74536316632924	43.836	0.40285	44.605	44.38	44.782	0.7691					13	7	2	0	0	0	0.92867	1	16381	16381		24.021	8.1734	1	2279700			48851	4730	35519	35806	47742	47742					0.01889211863374385
SLAEGRLY	8	Unmodified	_SLAEGRLY_					0	0	0		nc|ENSG00000135931|Q7Z3E5-2|ARMC9;ENSG00000135931|ENST00000611582|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	MULTI-MATCH	A375_MHC_IP_R1	1		2	454.745442	907.476331	0.26539	0.00012069	-0.078394	-3.5649E-05	0.187	8.5037E-05	454.74526358765854	44.651	0.81136	44.651	44.523	45.334	0	0.022977	1.2047E-05	NaN	24.021	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1535500			48852	4730	35519	35806							0.01889211863374385
SLAEGRLYL	9	Unmodified	_SLAEGRLYL_					0	0	0		nc|ENSG00000135931|Q7Z3E5-2|ARMC9;ENSG00000135931|ENST00000611582|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	MULTI-SECPEP	A375_MHC_IP_R1	1	511.6867370605469	2	511.287474	1020.5604	-0.39973	-0.00020438	0.015508	7.9291E-06	-0.38422	-0.00019645	511.2875213003093	70.723	0.97275	70.723	70.135	71.108	0					31	18	2	0	0	0	0.048303	1	25629	25629		93.166	43.233	1	34990000			48853	4730	35520	35807	47743	47743					0.05093742960275449
SLAEGRLYL	9	Unmodified	_SLAEGRLYL_					0	0	0		nc|ENSG00000135931|Q7Z3E5-2|ARMC9;ENSG00000135931|ENST00000611582|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	MULTI-MSMS	A375_MHC_IP_R2	2	511.6868591308594	2	511.287474	1020.5604	-0.67413	-0.00034467	-0.012487	-6.3843E-06	-0.68662	-0.00035106	511.2875359370967	69.728	1.0668	70.462	69.981	71.048	0.73421					48	20	3	0	0	0	0.012447	1	26391	26391		93.166	32.776	1	45083000			48854	4730	35520	35807	47744	47744					0.05093742960275449
SLAEKIQAL	9	Unmodified	_SLAEKIQAL_					0	0	0		ENSG00000148331|ENST00000277458|ASB6	ENSG00000148331|ENST00000277458|ASB6	ENSG00000148331|ENST00000277458|ASB6	MULTI-MSMS	A375_MHC_IP_R1	1	486.6669921875	2	486.78985	971.565146	-0.13788	-6.7121E-05	0.01665	8.1052E-06	-0.12123	-5.9016E-05	486.7898345724151	62.583	1.2299	62.583	61.943	63.173	0					56	23	4	0	0	0	0.51106	1	22473	22473		19.257	0	1	29747000			48855	5731	35521	35808	47745	47745					0.07822627103041668
SLAEKIQAL	9	Unmodified	_SLAEKIQAL_					0	0	0		ENSG00000148331|ENST00000277458|ASB6	ENSG00000148331|ENST00000277458|ASB6	ENSG00000148331|ENST00000277458|ASB6	MULTI-MSMS	A375_MHC_IP_R2	2	487.18951416015625	2	486.78985	971.565146	-0.91023	-0.00044309	0.045425	2.2113E-05	-0.8648	-0.00042098	486.7898114090215	61.701	0.95977	62.446	62.07	63.03	0.74504					51	18	4	0	0	0	0.0014143	1	23319	23319		149.91	31.846	1	32996000			48856	5731	35521	35808	47746	47746					0.07822627103041668
SLAEKVLAP	9	Unmodified	_SLAEKVLAP_					0	0	0			REV__nc|ENSG00000149179|Q9H6J7-3|CSTPP1	REV__nc|ENSG00000149179|Q9H6J7-3|CSTPP1	MULTI-SECPEP	A375_MHC_IP_R2	2	464.6789855957031	2	464.279118	926.543683	-0.84302	-0.0003914	0.32287	0.0001499	-0.52016	-0.0002415	464.2791827105296	49.849	0.71207	50.603	50.294	51.006	0.75406					32	13	3	0	0	0	0.27742	1	18702	18702		36.506	0	1	3222700	+		48857	19666	35522	35809	47747	47747					0.07747242074322003
SLAELPLPTP	10	Unmodified	_SLAELPLPTP_					0	0	0		nc|ENSG00000152582|Q9C093-2|SPEF2;ENSG00000152582|ENST00000356031|SPEF2;ENST00000503074.1_1_5:35700583-35709228:+|nuORF;SPEF2|p.W1139Cfs*8|1|0.8|ENSG00000152582|chr5:35753709-35753709|G/-|frameshift_variant	nc|ENSG00000152582|Q9C093-2|SPEF2	nc|ENSG00000152582|Q9C093-2|SPEF2	MULTI-SECPEP	A375_MHC_IP_R1	1	518.9840087890625	2	519.297507	1036.58046	-0.35646	-0.00018511	-0.32502	-0.00016878	-0.68148	-0.00035389	519.2972922400832	72.296	1.0641	72.296	71.715	72.779	0					25	20	2	0	0	0	0.87163	1	26247	26247		13.906	0	1	2905300			48858	5974	35523	35810	47748	47748					0.06363493900221329
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5|SESN1;nc|ENSG00000080546|Q9Y6P5-3|SESN1;ENSG00000080546|ENST00000436639|SESN1	nc|ENSG00000080546|Q9Y6P5|SESN1	nc|ENSG00000080546|Q9Y6P5|SESN1	MULTI-MSMS	A375_MHC_IP_R1	1	470.1688232421875	2	469.768917	937.523281	-0.54405	-0.00025558	-0.023278	-1.0935E-05	-0.56733	-0.00026651	469.76884921867276	84.316	1.3726	84.316	83.989	85.362	0					55	26	3	0	0	0	0.0093345	3	30825	30825;31039;31047		104.8	26.815	1	24387000			48859	14488	35524	35811	47749;47750;47751	47749					0.0520207141452147
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5|SESN1;nc|ENSG00000080546|Q9Y6P5-3|SESN1;ENSG00000080546|ENST00000436639|SESN1	nc|ENSG00000080546|Q9Y6P5|SESN1	nc|ENSG00000080546|Q9Y6P5|SESN1	MULTI-MSMS	A375_MHC_IP_R2	2	470.16876220703125	2	469.768917	937.523281	-0.57272	-0.00026905	-0.050048	-2.3511E-05	-0.62277	-0.00029256	469.76882663529756	83.335	1.1738	84.074	83.694	84.868	0.73962					54	22	4	0	0	0	0.010057	1	31620	31620		125.62	54.909	1	16792000			48860	14488	35524	35811	47752	47752					0.0520207141452147
SLAEPRVSV	9	Unmodified	_SLAEPRVSV_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	A375_MHC_IP_R1	1	479.6717834472656	2	479.271824	956.529095	-0.60075	-0.00028792	0.42583	0.00020409	-0.17492	-8.3835E-05	479.2719983174661	46.825	0.61507	46.825	46.596	47.211	0					24	11	3	0	0	0	0.049608	1	16421	16421		84.522	20.562	1	15164000			48861	7431	35525	35812	47753	47753					0.04909169926202139
SLAEPRVSV	9	Unmodified	_SLAEPRVSV_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	A375_MHC_IP_R2	2	479.67144775390625	2	479.271824	956.529095	-0.50122	-0.00024022	0.039016	1.8699E-05	-0.4622	-0.00022152	479.2718457999932	46.015	0.50562	46.78	46.552	47.058	0.76519					21	9	3	0	0	0	0.019126	1	17187	17187		84.522	20.562	1	18562000			48862	7431	35525	35812	47754	47754					0.04909169926202139
SLAEQLLQNS	10	Unmodified	_SLAEQLLQNS_					0	0	0			REV__ENST00000608007.1_1_1:156374126-156374321:-|nuORF	REV__ENST00000608007.1_1_1:156374126-156374321:-|nuORF	MSMS	A375_MHC_IP_R2	2	551.716064453125	2	551.790578	1101.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.3	1	25.944	25.444	26.444	0.64368								0	0	0	0.14804	1	8440	8440		21.537	1.0834	1		+		48863	26555	35526	35813	47755	47755					0.01988216401127829
SLAERVDRL	9	Unmodified	_SLAERVDRL_					0	0	0		ENSG00000158195|ENST00000618852|WASF2;nc|ENSG00000158195|Q9Y6W5-2|WASF2	ENSG00000158195|ENST00000618852|WASF2	ENSG00000158195|ENST00000618852|WASF2	MULTI-MSMS	A375_MHC_IP_R1	1	353.5976867675781	3	353.536612	1057.58801	0.1316	4.6524E-05	-0.11227	-3.9691E-05	0.019328	6.8333E-06	353.5365646608213	37.468	0.61328	37.468	37.148	37.761	0					31	11	4	0	0	0	0.11715	1	12577	12577		37.771	4.3264	1	18689000			48864	6293	35527	35814	47756	47756					0.06151646220519069
SLAERVDRL	9	Unmodified	_SLAERVDRL_					0	0	0		ENSG00000158195|ENST00000618852|WASF2;nc|ENSG00000158195|Q9Y6W5-2|WASF2	ENSG00000158195|ENST00000618852|WASF2	ENSG00000158195|ENST00000618852|WASF2	MULTI-SECPEP	A375_MHC_IP_R1	1	530.201171875	2	529.80128	1057.58801	-0.36152	-0.00019153	-0.062796	-3.327E-05	-0.42432	-0.0002248	529.8011561906318	37.433	0.46083	37.433	37.249	37.71	0					19	8	3	0	0	0	0.59098	1	12640	12640		16.149	2.2431	1	10949000			48865	6293	35527	35814	47757	47757					0.06151646220519069
SLAERVDRL	9	Unmodified	_SLAERVDRL_					0	0	0		ENSG00000158195|ENST00000618852|WASF2;nc|ENSG00000158195|Q9Y6W5-2|WASF2	ENSG00000158195|ENST00000618852|WASF2	ENSG00000158195|ENST00000618852|WASF2	MULTI-MSMS	A375_MHC_IP_R2	2	353.9365234375	3	353.536612	1057.58801	-0.52441	-0.0001854	0.098216	3.4723E-05	-0.42619	-0.00015067	353.53665456156057	36.46	0.61005	37.231	37.005	37.615	0.7709					29	11	4	0	0	0	0.032333	1	13297	13297		59.052	7.5645	1	24538000			48866	6293	35527	35814	47758	47758					0.06151646220519069
SLAESLDQA	9	Unmodified	_SLAESLDQA_					0	0	0		nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	MULTI-MSMS	A375_MHC_IP_R1	1	467.66290283203125	2	467.229822	932.445091	-0.15401	-7.1958E-05	0.39589	0.00018497	0.24188	0.00011301	467.2300957725612	56.454	0.40506	56.454	56.143	56.548	0					18	7	3	0	0	0	0.4867	1	20233	20233		20.454	3.5113	1	5389000			48867	1779	35528	35815	47759	47759					-0.02383405961381868
SLAETDKITL	10	Unmodified	_SLAETDKITL_					0	0	0		ENSG00000114573|ENST00000273398|ATP6V1A;nc|ENSG00000114573|P38606-2|ATP6V1A	ENSG00000114573|ENST00000273398|ATP6V1A	ENSG00000114573|ENST00000273398|ATP6V1A	MULTI-SECPEP	A375_MHC_IP_R1	1	546.2030639648438	2	545.803154	1089.59175	-0.50233	-0.00027417	-0.17996	-9.8224E-05	-0.68229	-0.0003724	545.8029585742626	63.493	0.91753	63.493	63.223	64.141	0					38	17	4	0	0	0	0.06375	1	22942	22942		114.5	41.529	1	10469000			48868	3230	35529	35816	47760	47760					0.05054271203721328
SLAETDKITL	10	Unmodified	_SLAETDKITL_					0	0	0		ENSG00000114573|ENST00000273398|ATP6V1A;nc|ENSG00000114573|P38606-2|ATP6V1A	ENSG00000114573|ENST00000273398|ATP6V1A	ENSG00000114573|ENST00000273398|ATP6V1A	MULTI-MSMS	A375_MHC_IP_R2	2	546.2027587890625	2	545.803154	1089.59175	-0.81147	-0.0004429	-0.12887	-7.0335E-05	-0.94034	-0.00051324	545.8030103678902	62.745	0.91071	63.488	63.18	64.091	0.74263					37	17	3	0	0	0	0.011374	1	23742	23742		121.5	41.907	1	13280000			48869	3230	35529	35816	47761	47761					0.05054271203721328
SLAETIRERL	10	Unmodified	_SLAETIRERL_					0	0	0			REV__ENSG00000180902|ENST00000321264|D2HGDH	REV__ENSG00000180902|ENST00000321264|D2HGDH	MSMS	A375_MHC_IP_R2	2	594.6329956054688	2	594.340769	1186.66699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.802	1	99.561	99.061	100.06	0.75977								0	0	0	0.15365	1	37477	37477		14.838	6.0929	1		+		48870	21627	35530	35817	47762	47762					0.08111873454822671
SLAEVLQQL	9	Unmodified	_SLAEVLQQL_					0	0	0		ENSG00000042445|ENST00000295802|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF;nc|ENSG00000042445|Q6NUM9-2|RETSAT	ENSG00000042445|ENST00000295802|RETSAT	ENSG00000042445|ENST00000295802|RETSAT	MULTI-MSMS	A375_MHC_IP_R1	1	500.68914794921875	2	500.787307	999.560061	-0.021931	-1.0983E-05	0.40365	0.00020214	0.38172	0.00019116	500.78756587766213	127.45	0.55551	127.45	127.22	127.77	0					24	10	3	0	0	0	0.010732	2	48858	48858;48883		183.04	41.212	1	43363000			48871	1174	35531	35818	47763;47764	47763					0.06026323240439524
SLAEVLQQL	9	Unmodified	_SLAEVLQQL_					0	0	0		ENSG00000042445|ENST00000295802|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF;nc|ENSG00000042445|Q6NUM9-2|RETSAT	ENSG00000042445|ENST00000295802|RETSAT	ENSG00000042445|ENST00000295802|RETSAT	MULTI-SECPEP	A375_MHC_IP_R1	1	999.9707641601562	1	1000.56734	999.560061	0.55857	0.00055889	0.8936	0.0008941	1.4522	0.001453	1000.5686925844379	127.45	0.35432	127.45	127.32	127.67	0					14	6	3	0	0	0	4.8715E-16	1	48887	48887		191.38	65.851	1	28636000			48872	1174	35531	35818	47765	47765					0.06026323240439524
SLAEVLQQL	9	Unmodified	_SLAEVLQQL_					0	0	0		ENSG00000042445|ENST00000295802|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF;nc|ENSG00000042445|Q6NUM9-2|RETSAT	ENSG00000042445|ENST00000295802|RETSAT	ENSG00000042445|ENST00000295802|RETSAT	MULTI-SECPEP	A375_MHC_IP_R2	2	999.9453125	1	1000.56734	999.560061	0.009193	9.1982E-06	-0.060753	-6.0788E-05	-0.05156	-5.159E-05	1000.5676248236455	127.12	0.20177	127.39	127.26	127.46	0.26593					6	3	2	0	0	0	3.7092E-06	1	49784	49784		206.75	56.754	1	26800000			48873	1174	35531	35818	47766	47766					0.06026323240439524
SLAEVNTQL	9	Unmodified	_SLAEVNTQL_					0	0	0		ENSG00000126001|ENST00000397527|CEP250;nc|ENSG00000126001|Q9BV73-2|CEP250;ENST00000465987.1_1_20:34053609-34055133:+|nuORF	ENSG00000126001|ENST00000397527|CEP250	ENSG00000126001|ENST00000397527|CEP250	MULTI-SECPEP	A375_MHC_IP_R1	1	488.1610412597656	2	487.761289	973.508025	-0.67633	-0.00032989	1.212	0.00059119	0.53571	0.0002613	487.7613613551872	68.083	0.8605	68.083	67.603	68.463	0					58	16	5	0	0	0	0.0085579	1	24623	24623		163.04	59.683	1	12102000			48874	4019	35532	35819	47767	47767					0.020211598266882902
SLAEVNTQL	9	Unmodified	_SLAEVNTQL_					0	0	0		ENSG00000126001|ENST00000397527|CEP250;nc|ENSG00000126001|Q9BV73-2|CEP250;ENST00000465987.1_1_20:34053609-34055133:+|nuORF	ENSG00000126001|ENST00000397527|CEP250	ENSG00000126001|ENST00000397527|CEP250	MULTI-SECPEP	A375_MHC_IP_R2	2	488.1608581542969	2	487.761289	973.508025	-0.59523	-0.00029033	-0.13713	-6.6887E-05	-0.73236	-0.00035722	487.76118759531636	67.29	0.76213	68.026	67.698	68.461	0.73631					24	14	2	0	0	0	0.010874	1	25439	25439		149.91	57.261	1	14552000			48875	4019	35532	35819	47768	47768					0.020211598266882902
SLAFNLDYY	9	Unmodified	_SLAFNLDYY_					0	0	0		ENST00000477418.2_1_1:27206170-27212721:-|nuORF	ENST00000477418.2_1_1:27206170-27212721:-|nuORF	ENST00000477418.2_1_1:27206170-27212721:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	552.6964721679688	2	553.263665	1104.51278	-0.52601	-0.00029102	-0.92365	-0.00051102	-1.4497	-0.00080204	553.7650544558853	59.613	0.71126	59.613	59.346	60.057	0					34	13	4	0	0	0	0.69504	1	21611	21611		18.135	4.2289	1	3479400			48876	12441	35533	35820	47769	47769					-0.03529956030570247
SLAFPHFFI	9	Unmodified	_SLAFPHFFI_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|281|3|anti-sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|281|3|anti-sense	MULTI-SECPEP	A375_MHC_IP_R2	2	359.61322021484375	3	360.195527	1077.56475	-0.43604	-0.00015706	-0.52822	-0.00019026	-0.96426	-0.00034732	360.195228338489	35.408	0.45458	36.172	35.929	36.384	0.76338					19	8	3	0	0	0	0.62767	1	12744	12744		11.495	2.5185	1	2565800	+		48877	26909	35534	35821	47770	47770					0.029072521738498835
SLAFRVQAF	9	Unmodified	_SLAFRVQAF_					0	0	0		ENSG00000198715|ENST00000362007|GLMP;nc|ENSG00000198715|Q8WWB7-2|GLMP;ENST00000484214.1_1_1:156263748-156265436:-|nuORF	ENSG00000198715|ENST00000362007|GLMP	ENSG00000198715|ENST00000362007|GLMP	MULTI-SECPEP	A375_MHC_IP_R1	1	520.188720703125	2	519.790184	1037.56581	-0.58302	-0.00030305	-0.44008	-0.00022875	-1.0231	-0.0005318	519.7897650651965	87.332	0.50986	87.332	87.083	87.593	0					16	9	2	0	0	0	0.35487	1	32062	32062		36.127	14.38	1	2039700			48878	9305	35535	35822	47771	47771					0.04853466542749629
SLAGAQKLVGA	11	Unmodified	_SLAGAQKLVGA_					0	0	0		COLGALT2|p.E505A|1|0.31|ENSG00000198756|chr1:183940671-183940671|T/G|missense_variant	COLGALT2|p.E505A|1|0.31|ENSG00000198756|chr1:183940671-183940671|T/G|missense_variant	COLGALT2|p.E505A|1|0.31|ENSG00000198756|chr1:183940671-183940671|T/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	507.7264709472656	2	507.800749	1013.58694	-0.58653	-0.00029784	-0.80747	-0.00041004	-1.394	-0.00070787	507.80052074159687	44.127	0.50593	44.897	44.58	45.086	0.7691					14	9	2	0	0	0	0.78118	1	16468	16468		20.415	11.031	1	2641100			48879	564	35536	35823	47772	47772					0.08069431851617992
SLAGARFGAA	10	Unmodified	_SLAGARFGAA_					0	0	0		ENST00000471849.5_1_1:23436104-23495315:-|nuORF	ENST00000471849.5_1_1:23436104-23495315:-|nuORF	ENST00000471849.5_1_1:23436104-23495315:-|nuORF	MSMS	A375_MHC_IP_R2	2	460.6578369140625	2	460.751059	919.487565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.388	1	32.106	31.606	32.606	0.71857								0	0	0	0.14179	1	11092	11092		29.082	5.9332	1				48880	12362	35537	35824	47773	47773					0.0246003395752723
SLAGDVALQQL	11	Unmodified	_SLAGDVALQQL_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-SECPEP	A375_MHC_IP_R1	1	558.1349487304688	2	557.808771	1113.60299	-0.53871	-0.0003005	-0.40425	-0.00022549	-0.94296	-0.00052599	557.8082598660773	99.511	0.75814	99.511	99.067	99.825	0					31	14	3	0	0	0	0.0059349	1	36562	36562		135.86	65.531	1	4287500			48881	976	35538	35825	47774	47774					0.05073093297869491
SLAGGIIGV	9	Unmodified	_SLAGGIIGV_					0	0	0		nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978-3|HNRNPK;ENST00000485383.1_1_3:96068520-96068997:+|nuORF	nc|ENSG00000165119|P61978|HNRNPK	nc|ENSG00000165119|P61978|HNRNPK	MULTI-MSMS	A375_MHC_IP_R1	1	787.4473876953125	1	786.47198	785.464704	-0.42799	-0.0003366	-0.0195	-1.5337E-05	-0.44749	-0.00035194	786.4719754674669	100.32	3.9515	100.32	99.825	103.78	0					205	77	5	0	0	0	0.0094266	5	36757	36757;36805;36965;37225;37239		123.1	25.941	1	983160000			48882	6916	35539	35826	47775;47776;47777;47778;47779	47775					0.0633901484004582
SLAGGIIGV	9	Unmodified	_SLAGGIIGV_					0	0	0		nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978-3|HNRNPK;ENST00000485383.1_1_3:96068520-96068997:+|nuORF	nc|ENSG00000165119|P61978|HNRNPK	nc|ENSG00000165119|P61978|HNRNPK	MULTI-MSMS	A375_MHC_IP_R2	2	786.1238403320312	1	786.47198	785.464704	-0.77654	-0.00061072	-0.069138	-5.4375E-05	-0.84567	-0.0006651	786.471899850683	99.38	4.3273	100.14	99.708	104.04	0.75977					204	84	5	0	0	0	0.011892	2	38790	38790;38965		93.883	17.595	1	1177800000			48883	6916	35539	35826	47780;47781	47780					0.0633901484004582
SLAGKFGR	8	Unmodified	_SLAGKFGR_					0	0	0			REV__ENST00000468844.1_1_X:118925076-118925472:-|nuORF	REV__ENST00000468844.1_1_X:118925076-118925472:-|nuORF	MSMS	A375_MHC_IP_R1	1	418.287353515625	2	418.24287	834.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.205	1	67.205	66.705	67.705	0								0	0	0	0.16876	1	24351	24351		9.3474	0	1		+		48884	25087	35540	35827	47782	47782					0.047329527914257596
SLAGLQPL	8	Unmodified	_SLAGLQPL_					0	0	0			REV__ENST00000478241.6_2_12:56229554-56229878:+|nuORF	REV__ENST00000478241.6_2_12:56229554-56229878:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	798.8707275390625	1	798.47198	797.464704	-0.84832	-0.00067736	-0.88888	-0.00070974	-1.7372	-0.0013871	798.4711496101905	92.426	1.0633	93.165	92.278	93.341	0.73902					25	20	2	0	0	0	0.16592	1	35102	35102		77.984	3.5616	1	3250100	+		48885	25210	35541	35828	47783	47783					0.05787014840052507
SLAGQTYAV	9	Unmodified	_SLAGQTYAV_					0	0	0		nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1;ENST00000400706.3_1_12:78799-87272:+|nuORF;ENST00000559163.6_1_15:102506277-102512065:+|nuORF;ENST00000558686.5_1_15:102506217-102512799:+|nuORF;ENST00000559884.5_1_15:102506277-102506794:+|nuORF;ENST00000557932.5_1_15:102506277-102513446:+|nuORF	nc|ENSG00000185596|C4AMC7|WASH3P	nc|ENSG00000185596|C4AMC7|WASH3P	MULTI-MSMS	A375_MHC_IP_R1	1	455.1656494140625	2	455.23745	908.460347	-0.15386	-7.0041E-05	0.14019	6.382E-05	-0.013666	-6.2215E-06	455.23740291859184	56	0.60847	56	55.738	56.347	0					18	11	2	0	0	0	0.070818	2	20064	20064;20112		56.177	7.8312	1	2924500			48886	14812	35542	35829	47784;47785	47784					0.00245505626457998
SLAGQTYAV	9	Unmodified	_SLAGQTYAV_					0	0	0		nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1;ENST00000400706.3_1_12:78799-87272:+|nuORF;ENST00000559163.6_1_15:102506277-102512065:+|nuORF;ENST00000558686.5_1_15:102506217-102512799:+|nuORF;ENST00000559884.5_1_15:102506277-102506794:+|nuORF;ENST00000557932.5_1_15:102506277-102513446:+|nuORF	nc|ENSG00000185596|C4AMC7|WASH3P	nc|ENSG00000185596|C4AMC7|WASH3P	MULTI-MSMS	A375_MHC_IP_R2	2	455.1652526855469	2	455.23745	908.460347	-0.31745	-0.00014451	-0.089599	-4.0789E-05	-0.40705	-0.0001853	455.2373531076396	55.208	0.55964	55.959	55.678	56.237	0.75075					17	10	2	0	0	0	0.11629	2	20921	20877;20921		47.749	15.443	1	3632200			48887	14812	35542	35829	47786;47787	47787					0.00245505626457998
SLAGQTYAV	9	Unmodified	_SLAGQTYAV_					0	0	0		nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1;ENST00000400706.3_1_12:78799-87272:+|nuORF;ENST00000559163.6_1_15:102506277-102512065:+|nuORF;ENST00000558686.5_1_15:102506217-102512799:+|nuORF;ENST00000559884.5_1_15:102506277-102506794:+|nuORF;ENST00000557932.5_1_15:102506277-102513446:+|nuORF	nc|ENSG00000185596|C4AMC7|WASH3P	nc|ENSG00000185596|C4AMC7|WASH3P	MULTI-MSMS	A375_MHC_IP_R2	2	909.8670654296875	1	909.467623	908.460347	-0.49022	-0.00044584	0.017487	1.5904E-05	-0.47273	-0.00042993	909.4676073308896	55.208	0.50852	55.959	55.729	56.237	0.75075					17	9	2	0	0	0	0.0099679	1	20914	20914		121.53	62.855	1	6492300			48888	14812	35542	35829	47788	47788					0.00245505626457998
SLAGQTYAV	9	Unmodified	_SLAGQTYAV_					0	0	0		nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1;ENST00000400706.3_1_12:78799-87272:+|nuORF;ENST00000559163.6_1_15:102506277-102512065:+|nuORF;ENST00000558686.5_1_15:102506217-102512799:+|nuORF;ENST00000559884.5_1_15:102506277-102506794:+|nuORF;ENST00000557932.5_1_15:102506277-102513446:+|nuORF	nc|ENSG00000185596|C4AMC7|WASH3P	nc|ENSG00000185596|C4AMC7|WASH3P	MULTI-MATCH	A375_MHC_IP_R1	1		1	909.467623	908.460347	-0.046995	-4.274E-05	-0.23648	-0.00021507	-0.28347	-0.00025781	909.4673346322352	56.016	0.50589	56.016	55.738	56.244	0	0.028513	-0.00010678	NaN	121.53	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7227800			48889	14812	35542	35829							0.00245505626457998
SLAGSLRSV	9	Unmodified	_SLAGSLRSV_					0	0	0		ENSG00000125089|ENST00000245105|SH3TC1;ENST00000506360.5_1_4:8220037-8234255:+|nuORF;ENST00000502669.5_1_4:8220037-8239209:+|nuORF;ENST00000515682.5_1_4:8207046-8242679:+|nuORF	ENSG00000125089|ENST00000245105|SH3TC1;ENST00000515682.5_1_4:8207046-8242679:+|nuORF	ENSG00000125089|ENST00000245105|SH3TC1	MULTI-MSMS	A375_MHC_IP_R2	2	445.658447265625	2	445.258717	888.50288	-0.46389	-0.00020655	-0.1426	-6.3493E-05	-0.60649	-0.00027005	445.25861908684396	45.124	1.0637	45.891	45.542	46.605	0.76777					47	20	4	0	0	0	0.14659	1	16822	16822		42.312	4.1369	1	48614000			48890	3940;12954	35543	35830	47789	47789					0.0541690075472161
SLAGVSFHSAI	11	Unmodified	_SLAGVSFHSAI_					0	0	0		RP1|p.P1116S|2|0.21|ENSG00000104237|chr8:54627228-54627228|C/T|missense_variant	RP1|p.P1116S|2|0.21|ENSG00000104237|chr8:54627228-54627228|C/T|missense_variant	RP1|p.P1116S|2|0.21|ENSG00000104237|chr8:54627228-54627228|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	544.633544921875	2	544.790381	1087.56621	-0.79885	-0.0004352	0.31246	0.00017022	-0.48639	-0.00026498	545.2915955100125	73.212	0.51002	73.947	73.581	74.091	0.7354					13	9	2	0	0	0	0.9754	1	27678	27678		4.897	0	1	1463200			48891	29090	35544	35831	47790	47790					0.025928414719373905
SLAHASVWGCL	11	Unmodified	_SLAHASVWGCL_					0	0	0		ENST00000495455.5_1_2:101999139-102003556:-|nuORF;ENST00000486966.1_1_2:101999472-102003919:-|nuORF;ENSG00000175874|ENST00000324768|CREG2	ENST00000495455.5_1_2:101999139-102003556:-|nuORF	ENST00000495455.5_1_2:101999139-102003556:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	571.917724609375	2	572.284408	1142.55426	-0.28482	-0.000163	3.4311	0.0019635	3.1462	0.0018005	572.7896647932818	75.942	0.95739	75.942	75.312	76.269	0					25	18	2	0	0	0	0.88538	1	27441	27441		18.146	0	1	2832000			48892	7986	35545	35832	47791	47791					-0.011310985428735876
SLAHELWKV	9	Unmodified	_SLAHELWKV_					0	0	0		nc|ENSG00000090905|Q8NDV7-2|TNRC6A;nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A	nc|ENSG00000090905|Q8NDV7-2|TNRC6A	nc|ENSG00000090905|Q8NDV7-2|TNRC6A	MULTI-MSMS	A375_MHC_IP_R1	1	361.9380187988281	3	361.537953	1081.59203	0.12055	4.3582E-05	-0.25773	-9.3179E-05	-0.13718	-4.9596E-05	361.53780283734613	61.05	0.56039	61.05	60.77	61.331	0					23	10	3	0	0	0	0.26911	1	21964	21964		32.898	17.941	1	8725100			48893	1963	35546	35833	47792	47792					0.054497357142281544
SLAHELWKV	9	Unmodified	_SLAHELWKV_					0	0	0		nc|ENSG00000090905|Q8NDV7-2|TNRC6A;nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A	nc|ENSG00000090905|Q8NDV7-2|TNRC6A	nc|ENSG00000090905|Q8NDV7-2|TNRC6A	MULTI-MSMS	A375_MHC_IP_R2	2	361.9375915527344	3	361.537953	1081.59203	-0.52339	-0.00018923	0.038152	1.3793E-05	-0.48524	-0.00017543	361.5379389087445	60.05	0.76304	60.797	60.45	61.213	0.74714					35	14	4	0	0	0	0.074562	2	22697	22697;22716		55.235	33.644	1	7605200			48894	1963	35546	35833	47793;47794	47793					0.054497357142281544
SLAHELWKV	9	Unmodified	_SLAHELWKV_					0	0	0		nc|ENSG00000090905|Q8NDV7-2|TNRC6A;nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A	nc|ENSG00000090905|Q8NDV7-2|TNRC6A	nc|ENSG00000090905|Q8NDV7-2|TNRC6A	MULTI-SECPEP	A375_MHC_IP_R2	2	542.2029418945312	2	541.803291	1081.59203	-1.1738	-0.00063599	0.87475	0.00047394	-0.29909	-0.00016205	541.8036148438714	60.018	0.40401	60.765	60.553	60.957	0.74714					12	7	2	0	0	0	0.47206	1	22732	22732		41.956	34.045	1	1347200			48895	1963	35546	35833	47795	47795					0.054497357142281544
SLAHKLQKIP	10	Unmodified	_SLAHKLQKIP_					0	0	0		NLRP2|p.E38K|1|0.38|ENSG00000022556|chr19:54970127-54970127|G/A|missense_variant	NLRP2|p.E38K|1|0.38|ENSG00000022556|chr19:54970127-54970127|G/A|missense_variant	NLRP2|p.E38K|1|0.38|ENSG00000022556|chr19:54970127-54970127|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	378.9486389160156	3	378.904636	1133.69208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.487	1	27.487	26.987	27.987	0								0	0	0	0.15265	1	8346	8346		7.4771	3.0709	1				48896	15003	35547	35834	47796	47796					0.1305797304803491
SLAKGDKYWQ	10	Unmodified	_SLAKGDKYWQ_					0	0	0			REV__ENST00000507059.5_1_5:180043993-180056331:-|nuORF	REV__ENST00000507059.5_1_5:180043993-180056331:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	399.6083679199219	3	399.208384	1194.60332	-0.28577	-0.00011408	0.52917	0.00021125	0.2434	9.7166E-05	399.2085348029463	38.5	0.25684	38.5	38.371	38.628	0					8	4	2	0	0	0	0.70012	1	13110	13110		10.899	2.7434	1	2946200	+		48897	16324	35548	35835	47797	47797					0.013805130177161118
SLAKHRAS	8	Unmodified	_SLAKHRAS_					0	0	0		tr|U7SWH1|U7SWH1_FUSNUPrecorrin-4C11-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01041PE=3SV=1	tr|U7SWH1|U7SWH1_FUSNUPrecorrin-4C11-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01041PE=3SV=1	tr|U7SWH1|U7SWH1_FUSNUPrecorrin-4C11-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01041PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	435.6224670410156	2	435.251226	868.487899	-0.12885	-5.6081E-05	0.054031	2.3517E-05	-0.074816	-3.2564E-05	435.2511548815594	99.112	5.1421	99.871	97.877	103.02	0.75977					173	100	3	0	0	0	0.77797	1	37556	37556		2.3027	2.3027	1	4933900			48898	29809	35549	35836	47798	47798					0.04839453677379879
SLAKIYTEA	9	Unmodified	_SLAKIYTEA_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-SECPEP	A375_MHC_IP_R1	1	498.1441650390625	2	498.274032	994.533512	0.058986	2.9391E-05	-0.40129	-0.00019995	-0.3423	-0.00017056	498.273820493214	44.601	0.81318	44.601	44.37	45.183	0					36	15	3	0	0	0	0.031881	1	15539	15539		107.56	59.815	1	25194000			48899	8616	35550	35837	47799	47799					0.036026343490902946
SLAKIYTEA	9	Unmodified	_SLAKIYTEA_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-SECPEP	A375_MHC_IP_R2	2	498.6853942871094	2	498.274032	994.533512	-0.32421	-0.00016155	-0.27653	-0.00013779	-0.60075	-0.00029934	498.2738650252398	43.78	1.0609	44.549	44.228	45.289	0.7691					45	20	4	0	0	0	0.049608	1	16339	16339		84.522	36.928	1	25040000			48900	8616	35550	35837	47800	47800					0.036026343490902946
SLALRILFY	9	Unmodified	_SLALRILFY_					0	0	0		ENSG00000205030|ENST00000378397|OR5L2	ENSG00000205030|ENST00000378397|OR5L2	ENSG00000205030|ENST00000378397|OR5L2	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6970825195312	2	548.331685	1094.64882	-0.52459	-0.00028765	-0.47959	-0.00026298	-1.0042	-0.00055063	548.3317290079308	61.718	0.30561	61.718	61.585	61.891	0					9	5	2	0	0	0	0.74412	1	22290	22290		3.2813	0	1	1204000			48901	9494	35551	35838	47801	47801					0.10527783270754298
SLALSPSRL	9	Unmodified	_SLALSPSRL_					0	0	0		ENST00000359933.5_1_14:96829454-96829655:-|nuORF	ENST00000359933.5_1_14:96829454-96829655:-|nuORF	ENST00000359933.5_1_14:96829454-96829655:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	471.6925354003906	2	472.282192	942.549831	-0.58827	-0.00027783	0.065036	3.0715E-05	-0.52323	-0.00024711	472.282254994295	80.617	1.2167	80.617	80.238	81.455	0					54	23	3	0	0	0	0.53748	1	29312	29312		24.021	0	1	30385000			48902	11022	35552	35839	47802	47802					0.0762576030585933
SLALSWKTEP	10	Unmodified	_SLALSWKTEP_					0	0	0			REV__ENST00000524168.1_1_8:23225784-23261561:-|nuORF	REV__ENST00000524168.1_1_8:23225784-23261561:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	566.170654296875	2	566.305864	1130.59717	-0.70641	-0.00040004	-0.11656	-6.6011E-05	-0.82297	-0.00046605	566.3055589634083	38.786	0.56171	39.56	39.25	39.812	0.77451					20	9	3	0	0	0	0.90513	1	14193	14193		8.1555	0	1	4122700	+		48903	25750	35553	35840	47803	47803					0.037099947861634064
SLALYRKAP	9	Unmodified	_SLALYRKAP_					0	0	0		ENST00000563255.1_1_16:65157767-65158064:-|nuORF	ENST00000563255.1_1_16:65157767-65158064:-|nuORF	ENST00000563255.1_1_16:65157767-65158064:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	510.14276123046875	2	509.805834	1017.59712	-0.78964	-0.00040256	-0.020453	-1.0427E-05	-0.81009	-0.00041299	509.80594783192254	68.22	0.45709	68.22	68.006	68.463	0					12	8	2	0	0	0	0.55359	1	24673	24673		28.487	0	1	1654400			48904	13522	35554	35841	47804	47804					0.08902039576844345
SLANETHQL	9	Unmodified	_SLANETHQL_					0	0	0		nc|ENSG00000168884|Q8NFZ5-2|TNIP2;ENSG00000168884|ENST00000315423|TNIP2;ENST00000507686.1_1_4:2747118-2749660:-|nuORF;ENST00000511352.1_1_4:2749267-2757702:-|nuORF;TNIP2|p.L241Afs*34|1|0.47|ENSG00000168884|chr4:2744882-2744883|-/C|frameshift_variant	nc|ENSG00000168884|Q8NFZ5-2|TNIP2	nc|ENSG00000168884|Q8NFZ5-2|TNIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	506.9273376464844	2	506.756538	1011.49852	-0.32307	-0.00016372	-0.72493	-0.00036736	-1.048	-0.00053108	506.75640862178733	31.706	0.45556	31.706	31.414	31.87	0					13	8	2	0	0	0	0.74169	1	10094	10094		16.149	1.3108	1	1410300			48905	7353	35555	35842	47805	47805					-0.006766084588548438
SLANETHQL	9	Unmodified	_SLANETHQL_					0	0	0		nc|ENSG00000168884|Q8NFZ5-2|TNIP2;ENSG00000168884|ENST00000315423|TNIP2;ENST00000507686.1_1_4:2747118-2749660:-|nuORF;ENST00000511352.1_1_4:2749267-2757702:-|nuORF;TNIP2|p.L241Afs*34|1|0.47|ENSG00000168884|chr4:2744882-2744883|-/C|frameshift_variant	nc|ENSG00000168884|Q8NFZ5-2|TNIP2	nc|ENSG00000168884|Q8NFZ5-2|TNIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	507.1560974121094	2	506.756538	1011.49852	-0.76807	-0.00038922	0.43507	0.00022047	-0.333	-0.00016875	506.756617824145	30.96	0.40384	31.678	31.417	31.821	0.71857					11	7	2	0	0	0	0.63622	1	10967	10967		19.362	3.2128	1	1730500			48906	7353	35555	35842	47806	47806					-0.006766084588548438
SLANFFDVLI	10	Unmodified	_SLANFFDVLI_					0	0	0			REV__ENSG00000106688|ENST00000262352|SLC1A1	REV__ENSG00000106688|ENST00000262352|SLC1A1	MSMS	A375_MHC_IP_R1	1	569.7130737304688	2	569.810782	1137.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.42	1	131.42	130.92	131.92	0								0	0	0	0.15332	1	50666	50666		10.074	0.72649	1		+		48907	17461	35556	35843	47807	47807					0.04371182791578576
SLANNVTSV	9	Unmodified	_SLANNVTSV_					0	0	0		ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	MULTI-MSMS	A375_MHC_IP_R1	1	453.1405334472656	2	452.740357	903.46616	-0.20463	-9.2644E-05	0.0085796	3.8843E-06	-0.19605	-8.8759E-05	452.74033463514587	50.587	1.473	50.587	50.254	51.728	0					83	28	4	0	0	0	0.0028027	2	17870	17870;18089		139.14	42.854	1	104210000			48908	1280	35557	35844	47808;47809	47808					0.010566041381594005
SLANNVTSV	9	Unmodified	_SLANNVTSV_					0	0	0		ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	MULTI-MSMS	A375_MHC_IP_R2	2	453.14019775390625	2	452.740357	903.46616	-0.50037	-0.00022654	0.17085	7.7353E-05	-0.32951	-0.00014918	452.7404250026549	49.773	1.9778	50.527	50.193	52.17	0.75406					89	38	4	0	0	0	0.0028027	2	18666	18666;18892		139.14	42.854	1	128620000			48909	1280	35557	35844	47810;47811	47810					0.010566041381594005
SLAPAGVIRV	10	Unmodified	_SLAPAGVIRV_					0	0	0		ENSG00000164438|ENST00000296921|TLX3	ENSG00000164438|ENST00000296921|TLX3	ENSG00000164438|ENST00000296921|TLX3	MULTI-SECPEP	A375_MHC_IP_R2	2	492.1985778808594	2	491.805834	981.597115	-0.5277	-0.00025953	-0.10286	-5.0588E-05	-0.63056	-0.00031011	491.80574500501433	77.14	0.55826	77.883	77.607	78.165	0.74293					15	10	2	0	0	0	0.78945	1	29349	29349		19.257	10.664	1	2266100			48910	6839	35558	35845	47812	47812					0.10558039576847023
SLAPAGVIRV	10	Unmodified	_SLAPAGVIRV_					0	0	0		ENSG00000164438|ENST00000296921|TLX3	ENSG00000164438|ENST00000296921|TLX3	ENSG00000164438|ENST00000296921|TLX3	MULTI-MATCH	A375_MHC_IP_R1	1		2	491.805834	981.597115	-0.22391	-0.00011012	-0.61576	-0.00030284	-0.83967	-0.00041296	491.8055298066363	78.147	0.71155	78.147	77.793	78.505	0	0.13219	-0.00024383	NaN	19.257	32	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3629100			48911	6839	35558	35845							0.10558039576847023
SLAPSITNV	9	Unmodified	_SLAPSITNV_					0	0	0		nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENST00000566319.2_1_16:47699793-47733274:+|nuORF	nc|ENSG00000102893|Q93100-4|PHKB	nc|ENSG00000102893|Q93100-4|PHKB	MULTI-MSMS	A375_MHC_IP_R1	1	451.6530456542969	2	451.2531	900.491647	-0.25497	-0.00011505	0.30256	0.00013653	0.047598	2.1479E-05	451.25322280451013	76.743	0.56042	76.743	76.471	77.032	0					20	10	3	0	0	0	0.0054362	2	27964	27941;27964		134.3	30.547	1	3102700			48912	14520	35559	35846	47813;47814	47814					0.03742078660570769
SLAPSITNV	9	Unmodified	_SLAPSITNV_					0	0	0		nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENST00000566319.2_1_16:47699793-47733274:+|nuORF	nc|ENSG00000102893|Q93100-4|PHKB	nc|ENSG00000102893|Q93100-4|PHKB	MULTI-MSMS	A375_MHC_IP_R2	2	451.65301513671875	2	451.2531	900.491647	-0.26212	-0.00011828	0.037703	1.7014E-05	-0.22442	-0.00010127	451.25308282240724	75.944	0.6087	76.684	76.334	76.943	0.74052					23	11	3	0	0	0	0.0054362	1	28808	28808		134.3	41.804	1	4392500			48913	14520	35559	35846	47815	47815					0.03742078660570769
SLAPVHVP	8	Unmodified	_SLAPVHVP_					0	0	0		ENSG00000110274|ENST00000278935|CEP164;nc|ENSG00000110274|Q9UPV0-2|CEP164	ENSG00000110274|ENST00000278935|CEP164	ENSG00000110274|ENST00000278935|CEP164	MSMS	A375_MHC_IP_R1	1	410.3067321777344	2	410.239796	818.465038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.894	1	23.894	23.394	24.394	0								0	0	0	0.16876	1	6656	6656		10.183	0.83596	1				48914	2926	35560	35847	47816	47816					0.04854434559899801
SLAQRFLL	8	Unmodified	_SLAQRFLL_					0	0	0		FRMPD4|p.S629F|2|0.66|ENSG00000169933|chrX:12716345-12716345|C/T|missense_variant	FRMPD4|p.S629F|2|0.66|ENSG00000169933|chrX:12716345-12716345|C/T|missense_variant	FRMPD4|p.S629F|2|0.66|ENSG00000169933|chrX:12716345-12716345|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	474.68731689453125	2	474.287277	946.560001	-0.59449	-0.00028196	0.62856	0.00029812	0.034063	1.6156E-05	474.28734547256244	90.021	0.70739	90.021	89.628	90.336	0					24	13	3	0	0	0	0.7256	1	33063	33063		26.884	0	1	2977100			48915	14019	35561	35848	47817	47817					0.08458368031108421
SLAQRFLL	8	Unmodified	_SLAQRFLL_					0	0	0		FRMPD4|p.S629F|2|0.66|ENSG00000169933|chrX:12716345-12716345|C/T|missense_variant	FRMPD4|p.S629F|2|0.66|ENSG00000169933|chrX:12716345-12716345|C/T|missense_variant	FRMPD4|p.S629F|2|0.66|ENSG00000169933|chrX:12716345-12716345|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	474.287277	946.560001	-0.47484	-0.00022521	0.08185	3.8821E-05	-0.39299	-0.00018639	474.2871673425168	88.93	0.55463	89.661	89.381	89.936	0.7318	-0.18	-0.00032817	NaN	26.884	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2486100			48916	14019	35561	35848							0.08458368031108421
SLAQYLINA	9	Unmodified	_SLAQYLINA_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	A375_MHC_IP_R1	1	497.1737976074219	2	496.7742	991.533846	-0.23786	-0.00011816	0.12461	6.1904E-05	-0.11325	-5.6261E-05	496.774199943033	110.66	1.2266	110.66	110.19	111.41	0					54	23	4	0	0	0	0.018261	1	40492	40492		85.642	17.561	1	23351000			48917	7414	35562	35849	47818	47818					0.037740540689469526
SLAQYLINA	9	Unmodified	_SLAQYLINA_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	A375_MHC_IP_R2	2	497.1742858886719	2	496.7742	991.533846	-0.35956	-0.00017862	-0.11835	-5.8791E-05	-0.4779	-0.00023741	496.77408185018413	109.73	0.966	110.48	110.03	111	0.74683					58	18	5	0	0	0	0.015356	1	41328	41328		89.401	17.478	1	21711000			48918	7414	35562	35849	47819	47819					0.037740540689469526
SLAQYLINV	9	Unmodified	_SLAQYLINV_					0	0	0		nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	nc|ENSG00000197111|Q15366-7|PCBP2	nc|ENSG00000197111|Q15366-7|PCBP2	MULTI-MSMS	A375_MHC_IP_R1	1	511.1895751953125	2	510.78985	1019.56515	-0.25741	-0.00013148	0.17051	8.7096E-05	-0.086895	-4.4385E-05	510.7899074696203	126.03	1.2092	126.03	125.8	127.01	0					57	23	5	0	0	0	0.0022058	1	48071	48071		142.08	38.331	1	839970000			48919	9115	35563	35850	47820	47820					0.056146271030456774
SLAQYLINV	9	Unmodified	_SLAQYLINV_					0	0	0		nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	nc|ENSG00000197111|Q15366-7|PCBP2	nc|ENSG00000197111|Q15366-7|PCBP2	MULTI-MSMS	A375_MHC_IP_R2	2	511.1888732910156	2	510.78985	1019.56515	-0.70755	-0.00036141	-0.62522	-0.00031936	-1.3328	-0.00068076	510.7894991734403	125.55	1.4143	125.85	125.67	127.09	0.2951					70	27	5	0	0	0	0.0022058	2	48961	48961;49372		142.08	49.588	1	881600000			48920	9115	35563	35850	47821;47822	47821					0.056146271030456774
SLAQYLINV	9	Unmodified	_SLAQYLINV_					0	0	0		nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	nc|ENSG00000197111|Q15366-7|PCBP2	nc|ENSG00000197111|Q15366-7|PCBP2	MULTI-MSMS	A375_MHC_IP_R2	2	1020.9111328125	1	1020.57242	1019.56515	0.072202	7.3688E-05	-0.65959	-0.00067316	-0.58739	-0.00059947	1020.5716388559921	125.55	0.45312	125.85	125.67	126.12	0.2951					23	8	4	0	0	0	0.0018976	1	49064	49064		145.13	69.369	1	433700000			48921	9115	35563	35850	47823	47823					0.056146271030456774
SLAQYLINV	9	Unmodified	_SLAQYLINV_					0	0	0		nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	nc|ENSG00000197111|Q15366-7|PCBP2	nc|ENSG00000197111|Q15366-7|PCBP2	MSMS	A375_MHC_IP_R2	2	510.68218994140625	2	510.78985	1019.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.19	1	127.46	126.96	127.96	0.26593								0	0	0	0.075877	1	49830	49830		47.749	13.347	1				48922	9115	35563	35850	47824	47824					0.056146271030456774
SLAQYLINV	9	Unmodified	_SLAQYLINV_					0	0	0		nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	nc|ENSG00000197111|Q15366-7|PCBP2	nc|ENSG00000197111|Q15366-7|PCBP2	MULTI-MATCH	A375_MHC_IP_R1	1		1	1020.57242	1019.56515	0.37191	0.00037956	0.1854	0.00018922	0.55731	0.00056878	1020.5725396246889	126.07	0.55417	126.07	125.9	126.46	0	0.11294	0.0007288	NaN	145.13	26	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	384170000			48923	9115	35563	35850							0.056146271030456774
SLAQYNPKL	9	Unmodified	_SLAQYNPKL_					0	0	0		ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1;ENST00000520550.1_1_5:67588878-67591317:+|nuORF;nc|ENSG00000145675|P27986-5|PIK3R1;nc|ENSG00000117461|Q92569-3|PIK3R3;nc|ENSG00000117461|Q92569-2|PIK3R3;nc|ENSG00000145675|P27986-3|PIK3R1;nc|ENSG00000145675|P27986-2|PIK3R1;ENSG00000117461|ENST00000262741|PIK3R3	ENSG00000145675|ENST00000521381|PIK3R1	ENSG00000145675|ENST00000521381|PIK3R1	MULTI-SECPEP	A375_MHC_IP_R1	1	517.6867065429688	2	517.287474	1032.5604	-0.42766	-0.00022122	-0.13437	-6.9509E-05	-0.56203	-0.00029073	517.2872781289647	50.039	0.6651	50.039	49.743	50.408	0					30	12	3	0	0	0	0.28216	1	17690	17690		41.84	3.8656	1	5606600			48924	5569	35564	35851	47825	47825					0.04541742960282136
SLAQYNPKL	9	Unmodified	_SLAQYNPKL_					0	0	0		ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1;ENST00000520550.1_1_5:67588878-67591317:+|nuORF;nc|ENSG00000145675|P27986-5|PIK3R1;nc|ENSG00000117461|Q92569-3|PIK3R3;nc|ENSG00000117461|Q92569-2|PIK3R3;nc|ENSG00000145675|P27986-3|PIK3R1;nc|ENSG00000145675|P27986-2|PIK3R1;ENSG00000117461|ENST00000262741|PIK3R3	ENSG00000145675|ENST00000521381|PIK3R1	ENSG00000145675|ENST00000521381|PIK3R1	MULTI-SECPEP	A375_MHC_IP_R2	2	517.687255859375	2	517.287474	1032.5604	-0.96232	-0.0004978	0.11714	6.0593E-05	-0.84519	-0.00043721	517.287576330931	49.266	1.0152	50.023	49.282	50.297	0.75737					41	19	4	0	0	0	0.11711	1	18493	18493		51.63	15.503	1	6625800			48925	5569	35564	35851	47826	47826					0.04541742960282136
SLARRILILFL	11	Unmodified	_SLARRILILFL_					0	0	0			REV__nc|ENSG00000166073|Q14439-2|GPR176	REV__nc|ENSG00000166073|Q14439-2|GPR176	MSMS	A375_MHC_IP_R2	2	657.7642211914062	2	657.93464	1313.85473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.183	1	87.916	87.416	88.416	0.733								0	0	0	0.16334	1	33155	33155		1.3295	0	1		+		48926	20649	35565	35852	47827	47827					0.21035356450056497
SLASELEKL	9	Unmodified	_SLASELEKL_					0	0	0		nc|ENSG00000169641|Q86V48-2|LUZP1;nc|ENSG00000169641|Q86V48-3|LUZP1;ENSG00000169641|ENST00000302291|LUZP1	nc|ENSG00000169641|Q86V48-2|LUZP1	nc|ENSG00000169641|Q86V48-2|LUZP1	MULTI-MSMS	A375_MHC_IP_R1	1	495.6519775390625	2	495.279315	988.544076	-0.46743	-0.00023151	-0.19853	-9.833E-05	-0.66596	-0.00032984	495.279231293132	87.124	0.76276	87.124	86.881	87.644	0					18	14	2	0	0	0	0.2415	1	32011	32011		34.932	5.0915	1	1660800			48927	7426	35566	35853	47828	47828					0.04934617003527819
SLASEPWGL	9	Unmodified	_SLASEPWGL_					0	0	0		ENST00000477976.5_1_1:880076-889593:-|nuORF	ENST00000477976.5_1_1:880076-889593:-|nuORF	ENST00000477976.5_1_1:880076-889593:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	480.6454162597656	2	480.245275	958.475997	-0.37533	-0.00018025	0.18317	8.7965E-05	-0.19216	-9.2286E-05	480.245341876342	98.364	0.66078	98.364	98.05	98.711	0					20	12	2	0	0	0	0.1478	1	36140	36140		42.095	2.1372	1	2053200			48928	12454	35567	35854	47829	47829					-0.004902078564668955
SLASHLSGYI	10	Unmodified	_SLASHLSGYI_					0	0	0		ENST00000470606.5_1_13:28000472-28009731:+|nuORF;nc|ENSG00000122034|Q92664-2|GTF3A;ENSG00000122034|ENST00000381140|GTF3A;ENST00000482655.2_1_13:28008892-28009731:+|nuORF	ENST00000470606.5_1_13:28000472-28009731:+|nuORF	ENST00000470606.5_1_13:28000472-28009731:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	524.6771850585938	2	524.277106	1046.53966	-0.76693	-0.00040208	0.47468	0.00024887	-0.29225	-0.00015322	524.2773755433558	49.898	0.56016	50.652	50.344	50.904	0.75406					19	10	3	0	0	0	0.87163	1	18792	18792		9.3831	0	1	2464900			48929	3759	35568	35855	47830	47830					0.018251525806363134
SLASLLAKV	9	Unmodified	_SLASLLAKV_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	A375_MHC_IP_R1	1	451.6894836425781	2	451.289485	900.564418	-0.11256	-5.0797E-05	-0.29437	-0.00013284	-0.40693	-0.00018364	451.2892805804145	102.13	0.4556	102.13	101.9	102.35	0					14	8	2	0	0	0	0.037683	1	37556	37556		69.105	27.265	1	1579000			48930	3337	35569	35856	47831	47831					0.11015832453995245
SLASLLAKV	9	Unmodified	_SLASLLAKV_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	A375_MHC_IP_R2	2	451.6897888183594	2	451.289485	900.564418	-0.14564	-6.5724E-05	0.56368	0.00025438	0.41805	0.00018866	451.28969516229387	101.01	0.51337	101.78	101.55	102.06	0.76428					16	9	2	0	0	0	0.17338	1	38326	38326		39.95	1.9757	1	1498700			48931	3337	35569	35856	47832	47832					0.11015832453995245
SLASLLVSV	9	Unmodified	_SLASLLVSV_					0	0	0		ENST00000461361.5_1_3:45016905-45052828:+|nuORF;ENSG00000075914|ENST00000265564|EXOSC7	ENST00000461361.5_1_3:45016905-45052828:+|nuORF	ENST00000461361.5_1_3:45016905-45052828:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	445.1742858886719	2	444.773668	887.532783	-0.26558	-0.00011813	1.1806	0.00052512	0.91506	0.000407	444.7740402242329	129.66	0.30469	129.66	129.55	129.85	0					10	5	3	0	0	0	0.3607	1	49889	49889		42.095	6.0504	1	5564900			48932	1625	35570	35857	47833	47833					0.08451839700057917
SLASLLVSV	9	Unmodified	_SLASLLVSV_					0	0	0		ENST00000461361.5_1_3:45016905-45052828:+|nuORF;ENSG00000075914|ENST00000265564|EXOSC7	ENST00000461361.5_1_3:45016905-45052828:+|nuORF	ENST00000461361.5_1_3:45016905-45052828:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	444.773668	887.532783	-0.42099	-0.00018725	0.27358	0.00012168	-0.14741	-6.5565E-05	444.7737084875857	129.35	0.20172	129.59	129.47	129.67	0.23946	-0.03569	-0.00033692	NaN	42.095	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2899300			48933	1625	35570	35857							0.08451839700057917
SLASSWDYR	9	Unmodified	_SLASSWDYR_					0	0	0		ENST00000474660.5_3_3:58292052-58302269:+|nuORF;ENST00000461797.5_2_3:58296047-58302269:+|nuORF;ENST00000498618.5_1_3:58292148-58302269:+|nuORF	ENST00000474660.5_3_3:58292052-58302269:+|nuORF	ENST00000474660.5_3_3:58292052-58302269:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	542.6983642578125	2	542.756538	1083.49852	-0.32278	-0.00017519	-0.17301	-9.3902E-05	-0.49579	-0.00026909	542.7562657869546	21.591	0.66125	21.591	21.25	21.911	0					32	12	3	0	0	0	0.72985	1	5807	5807		4.3292	0	1	4114700			48934	12192	35571	35858	47834	47834					-0.0398860845884883
SLASTLKTLLF	11	Unmodified	_SLASTLKTLLF_					0	0	0		ENSG00000160131|ENST00000330374|VMA21;nc|ENSG00000160131|Q3ZAQ7-2|VMA21	ENSG00000160131|ENST00000330374|VMA21	ENSG00000160131|ENST00000330374|VMA21	MULTI-SECPEP	A375_MHC_IP_R1	1	596.8536376953125	2	597.360639	1192.70673	-0.37771	-0.00022563	0.47302	0.00028256	0.095309	5.6934E-05	597.8622179871846	104.16	0.35791	104.16	103.93	104.29	0					12	6	2	0	0	0	0.9836	1	38260	38260		16.149	3.1066	1	921710			48935	6399	35572	35859	47835	47835					0.11808000405517305
SLASTLKTLLF	11	Unmodified	_SLASTLKTLLF_					0	0	0		ENSG00000160131|ENST00000330374|VMA21;nc|ENSG00000160131|Q3ZAQ7-2|VMA21	ENSG00000160131|ENST00000330374|VMA21	ENSG00000160131|ENST00000330374|VMA21	MULTI-MATCH	A375_MHC_IP_R2	2		2	597.360639	1192.70673	-0.54269	-0.00032418	-0.27658	-0.00016522	-0.81927	-0.0004894	597.360384791279	103.11	0.40721	103.88	103.74	104.14	0.76428	-0.14062	-0.00025968	NaN	16.149	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1089200			48936	6399	35572	35859							0.11808000405517305
SLATHLQEL	9	Unmodified	_SLATHLQEL_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-SECPEP	A375_MHC_IP_R1	1	505.7133483886719	2	506.277106	1010.53966	-0.35421	-0.00017933	0.47761	0.0002418	0.12341	6.2477E-05	506.27774640539843	59.95	0.61089	59.95	59.548	60.159	0					15	11	2	0	0	0	0.5212	1	21621	21621		32.786	15.673	1	1165900			48937	2114	35573	35860	47836	47836					0.034811525806162535
SLAVELLCSMC	11	Unmodified	_SLAVELLCSMC_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MSMS	A375_MHC_IP_R2	2	584.73583984375	2	584.77417	1167.53379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.53	1	102.29	101.79	102.79	0.76428								0	0	0	0.13869	1	38482	38482		27.629	13.723	1		+		48938	17289	35574	35861	47837	47837					-0.043277733092054405
SLAVKKEL	8	Unmodified	_SLAVKKEL_					0	0	0			REV__BOD1L1|p.S2975Lfs*72|1|0.17|ENSG00000038219|chr4:13576953-13576953|A/-|frameshift_variant	REV__BOD1L1|p.S2975Lfs*72|1|0.17|ENSG00000038219|chr4:13576953-13576953|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	444.68133544921875	2	444.28166	886.548768	-0.47201	-0.00020971	-0.49009	-0.00021774	-0.9621	-0.00042744	444.2815469813304	45.029	0.45761	45.798	45.594	46.052	0.76909					13	8	2	0	0	0	0.7256	1	16837	16837		26.884	0	1	2403800	+		48939	15521	35575	35862	47838	47838					0.10095545936962935
SLAVLGGKLYV	11	Unmodified	_SLAVLGGKLYV_					0	0	0		ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-MSMS	A375_MHC_IP_R2	2	560.7416381835938	2	560.342249	1118.66995	-0.7361	-0.00041247	0.26962	0.00015108	-0.46648	-0.00026139	560.3423635704895	96.607	0.70654	97.363	97.013	97.72	0.75586					24	13	3	0	0	0	0.069885	1	36660	36660		75.571	46.489	1	2886200			48940	6530	35576	35863	47839	47839					0.11535748579603933
SLAVLWSIHAR	11	Unmodified	_SLAVLWSIHAR_					0	0	0			REV__ENST00000594629.1_1_19:58382130-58400344:-|nuORF	REV__ENST00000594629.1_1_19:58382130-58400344:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	418.9102478027344	3	418.24354	1251.70879	0.21936	9.1744E-05	-1.1372	-0.00047565	-0.91789	-0.0003839	418.242950874433	61.985	0.61239	61.985	61.585	62.198	0					15	11	2	0	0	0	0.99945	1	22258	22258		4.1166	4.1166	1	1123400	+		48941	26463	35577	35864	47840	47840					0.09300473933990361
SLAVQQLSR	9	Unmodified	_SLAVQQLSR_					0	0	0		nc|ENSG00000183914|Q9P225-2|DNAH2;ENSG00000183914|ENST00000572933|DNAH2;ENST00000574518.1_1_17:7674005-7689702:+|nuORF	nc|ENSG00000183914|Q9P225-2|DNAH2	nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-MSMS	A375_MHC_IP_R2	2	501.6905517578125	2	501.290548	1000.56654	-0.3975	-0.00019926	0.057157	2.8652E-05	-0.34035	-0.00017061	501.2904638081066	114.09	5.6505	114.8	111.98	117.63	0.70984					264	110	4	0	0	0	0.70307	1	42477	42477		6.7232	0	1	35047000			48942	8541	35578	35865	47841	47841					0.06628261191804086
SLAVSSPRL	9	Unmodified	_SLAVSSPRL_					0	0	0		ENSG00000164062|ENST00000296456|APEH;ENST00000482301.1_1_3:49714104-49717481:+|nuORF	ENSG00000164062|ENST00000296456|APEH	ENSG00000164062|ENST00000296456|APEH	MULTI-MSMS	A375_MHC_IP_R1	1	465.6741638183594	2	465.274367	928.53418	-0.2212	-0.00010292	-0.13572	-6.3147E-05	-0.35692	-0.00016607	465.2742775035528	50.774	0.50727	50.774	50.408	50.915	0					14	9	2	0	0	0	0.22013	1	18012	18012		36.506	11.107	1	3371000			48943	6767	35579	35866	47842	47842					0.06705473788815652
SLAVTPKRTD	10	Unmodified	_SLAVTPKRTD_					0	0	0			REV__WDR59|p.H928Tfs*12|1|0.43|ENSG00000103091|chr16:74874353-74874353|A/-|frameshift_variant	REV__WDR59|p.H928Tfs*12|1|0.43|ENSG00000103091|chr16:74874353-74874353|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	543.677734375	2	544.308938	1086.60332	-0.69978	-0.00038089	0.024164	1.3152E-05	-0.67561	-0.00036774	544.3087873335566	129.12	0.91527	129.12	128.94	129.85	0					34	17	2	0	0	0	0.92227	1	49832	49832		2.7352	1.0826	1	39562000	+		48944	17252	35580	35867	47843	47843					0.06348513017701407
SLAYPCIEMS	10	Unmodified	_SLAYPCIEMS_					0	0	0		ENST00000435844.3_2_20:18548090-18550131:+|nuORF	ENST00000435844.3_2_20:18548090-18550131:+|nuORF	ENST00000435844.3_2_20:18548090-18550131:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	557.6511840820312	2	557.251385	1112.48822	-0.4091	-0.00022797	0.063444	3.5354E-05	-0.34566	-0.00019262	557.2514616850857	49.996	0.71505	49.996	49.642	50.357	0					25	13	2	0	0	0	0.69306	1	17681	17681		13.906	3.8321	1	5303000			48945	11918	35581	35868	47844	47844					-0.06352675499942961
SLAYPCIEMS	10	Unmodified	_SLAYPCIEMS_					0	0	0		ENST00000435844.3_2_20:18548090-18550131:+|nuORF	ENST00000435844.3_2_20:18548090-18550131:+|nuORF	ENST00000435844.3_2_20:18548090-18550131:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	558.1889038085938	2	557.251385	1112.48822	-0.98379	-0.00054822	-0.1519	-8.4644E-05	-1.1357	-0.00063286	557.2513349447183	49.227	0.60737	49.984	49.69	50.297	0.75737					30	11	3	0	0	0	0.6806	2	18404	18404;18474		14.838	4.5229	1	3710500			48946	11918	35581	35868	47845;47846	47845					-0.06352675499942961
SLAYPIAGRL	10	Unmodified	_SLAYPIAGRL_					0	0	0			REV__ENSG00000197818|ENST00000361573|SLC9A8	REV__ENSG00000197818|ENST00000361573|SLC9A8	MSMS	A375_MHC_IP_R1	1	530.7115478515625	2	530.811116	1059.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.17	1	128.17	127.67	128.67	0								0	0	0	0.15451	1	49205	49205		6.2058	0.47393	1		+		48947	22319	35582	35869	47847	47847					0.0802602223127451
SLAYTRHSY	9	Unmodified	_SLAYTRHSY_					0	0	0			REV__nc|ENSG00000185271|A6NCF5|KLHL33	REV__nc|ENSG00000185271|A6NCF5|KLHL33	MULTI-MSMS	A375_MHC_IP_R2	2	550.6753540039062	2	549.272355	1096.53016	-1.1633	-0.00063897	0.90812	0.0004988	-0.25518	-0.00014016	549.2728578655858	59.655	1.215	60.403	59.896	61.111	0.74714					57	23	4	0	0	0	0.5339	1	22467	22467		18.135	5.6034	1	7710700	+		48948	21884	35583	35870	47848	47848					-0.01424615704900134
SLCCTCCCW	9	Unmodified	_SLCCTCCCW_					0	0	0			REV__ENST00000329276.9_1_20:2633298-2633542:+|nuORF	REV__ENST00000329276.9_1_20:2633298-2633542:+|nuORF	MSMS	A375_MHC_IP_R1	1	511.1690368652344	2	511.157062	1020.29957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.055	1	96.055	95.555	96.555	0								0	0	0	0.15486	1	35304	35304		2.0598	0	1		+		48949	23613	35584	35871	47849	47849					-0.2097669094109733
SLCEDPVC	8	Unmodified	_SLCEDPVC_					0	0	0		ENSG00000122863|ENST00000373115|CHST3	ENSG00000122863|ENST00000373115|CHST3	ENSG00000122863|ENST00000373115|CHST3	MSMS	A375_MHC_IP_R1	1	433.2851867675781	2	433.175146	864.33574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.015	1	77.015	76.515	77.515	0								0	0	0	0.16876	1	28083	28083		4.756	2.1785	1				48950	3811	35585	35872	47850	47850					-0.10185451176710103
SLCIRKILKRK	11	Unmodified	_SLCIRKILKRK_					0	0	0		ENST00000318121.7_1_1:36230063-36230255:-|nuORF	ENST00000318121.7_1_1:36230063-36230255:-|nuORF	ENST00000318121.7_1_1:36230063-36230255:-|nuORF	MSMS	A375_MHC_IP_R2	2	679.3967895507812	2	679.444849	1356.87514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.65	1	107.41	106.91	107.91	0.75977								0	0	0	0.16354	1	40308	40308		0.30703	0	1				48951	10670	35586	35873	47851	47851					0.2109820383816441
SLCIYLDLPWY	11	Unmodified	_SLCIYLDLPWY_					0	0	0		ENSG00000174130|ENST00000508254|TLR6	ENSG00000174130|ENST00000508254|TLR6	ENSG00000174130|ENST00000508254|TLR6	MULTI-SECPEP	A375_MHC_IP_R1	1	463.29913330078125	3	462.56518	1384.67371	-0.1531	-7.0819E-05	-0.59378	-0.00027466	-0.74688	-0.00034548	462.56490953036837	20.335	0.35562	20.335	20.129	20.485	0					11	6	2	0	0	0	0.99681	1	5208	5208		4.4062	1.0865	1	2576300			48952	7857	35587	35874	47852	47852					-0.0032394970883160568
SLCKFTAL	8	Unmodified	_SLCKFTAL_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MSMS	A375_MHC_IP_R1	1	441.6763610839844	2	441.741314	881.468075	-0.12056	-5.3255E-05	-0.33315	-0.00014716	-0.4537	-0.00020042	441.74119716878795	50.411	0.56307	50.411	50.049	50.613	0					17	10	2	0	0	0	0.77488	1	17891	17891		13.508	4.1604	1	1473500			48953	14531	35588	35875	47853	47853					0.022599416223897606
SLCPGAWLR	9	Unmodified	_SLCPGAWLR_					0	0	0		nc|ENSG00000154511|Q5T7M9-2|DIPK1A;ENSG00000154511|ENST00000370310|DIPK1A	nc|ENSG00000154511|Q5T7M9-2|DIPK1A	nc|ENSG00000154511|Q5T7M9-2|DIPK1A	MSMS	A375_MHC_IP_R2	2	501.6565856933594	2	501.763112	1001.51167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.874	1	55.625	55.125	56.125	0.75075								0	0	0	0.15486	1	20718	20718		11.64	2.2929	1				48954	6092	35589	35876	47854	47854					0.010975511195169929
SLCQSAQQ	8	Unmodified	_SLCQSAQQ_					0	0	0			REV__ENSG00000214753|ENST00000301785|HNRNPUL2	REV__ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-SECPEP	A375_MHC_IP_R2	2	433.09783935546875	2	432.697635	863.380716	-0.1941	-8.3987E-05	0.84164	0.00036418	0.64754	0.00028019	432.69790221269886	46.015	0.75594	46.78	46.403	47.159	0.76519					34	14	3	0	0	0	0.97021	1	17153	17153		10.824	2.2306	1	11064000	+		48955	22659	35590	35877	47855	47855					-0.05643884319169956
SLCREEAEGL	10	Unmodified	_SLCREEAEGL_					0	0	0			REV__ENSG00000166963|ENST00000300231|MAP1A	REV__ENSG00000166963|ENST00000300231|MAP1A	MULTI-MSMS	A375_MHC_IP_R1	1	553.6612548828125	2	553.760963	1105.50737	-0.52334	-0.0002898	0.72576	0.0004019	0.20242	0.00011209	553.7612975210905	103.89	0.6618	103.89	103.52	104.18	0					27	12	3	0	0	0	0.70329	1	38240	38240		10.824	0.67336	1	4931500	+		48956	20723	35591	35878	47856	47856					-0.04116002884711634
SLCRISSVPG	10	Unmodified	_SLCRISSVPG_					0	0	0		ENSG00000164061|ENST00000296452|BSN	ENSG00000164061|ENST00000296452|BSN	ENSG00000164061|ENST00000296452|BSN	MULTI-SECPEP	A375_MHC_IP_R1	1	509.95947265625	2	509.771134	1017.52771	-0.71844	-0.00036624	-0.40667	-0.00020731	-1.1251	-0.00057355	509.77092886638593	23.532	0.40754	23.532	23.33	23.737	0					9	7	2	0	0	0	0.92957	1	6405	6405		6.2058	1.4498	1	2212700			48957	6766	35592	35879	47857	47857					0.019652125657898978
SLCSPATNW	9	Unmodified	_SLCSPATNW_					0	0	0		HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	MSMS	A375_MHC_IP_R1	1	489.52545166015625	2	489.72111	977.427666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.795	1	86.795	86.295	87.295	0								0	0	0	0.12568	1	31835	31835		34.102	10.082	1				48958	14109	35593	35880	47858	47858					-0.06195024768044277
SLCSSSSDPAP	11	Unmodified	_SLCSSSSDPAP_					0	0	0		nc|ENSG00000162522|Q9P206|NHSL3;nc|ENSG00000162522|Q9P206-3|NHSL3;ENSG00000162522|ENST00000401073|KIAA1522	nc|ENSG00000162522|Q9P206|NHSL3	nc|ENSG00000162522|Q9P206|NHSL3	MSMS	A375_MHC_IP_R1	1	525.70849609375	2	525.724046	1049.43354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.921	1	31.921	31.421	32.421	0								0	0	0	0.15541	1	10265	10265		17.113	2.2746	1				48959	6545	35594	35881	47859	47859					-0.08919971047021136
SLCSYLDLPWY	11	Unmodified	_SLCSYLDLPWY_					0	0	0		ENSG00000174125|ENST00000308979|TLR1	ENSG00000174125|ENST00000308979|TLR1	ENSG00000174125|ENST00000308979|TLR1	MSMS	A375_MHC_IP_R2	2	680.300048828125	2	680.318114	1358.62167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.485	1	92.22	91.72	92.72	0.7345								0	0	0	0.16249	1	34799	34799		5.7319	1.203	1				48960	7856	35595	35882	47860	47860					-0.04329113122594208
SLCVCYSASI	10	Unmodified	_SLCVCYSASI_					0	0	0		ENSG00000007216|ENST00000314669|SLC13A2;nc|ENSG00000007216|Q13183-2|SLC13A2;nc|ENSG00000007216|Q13183-3|SLC13A2	ENSG00000007216|ENST00000314669|SLC13A2	ENSG00000007216|ENST00000314669|SLC13A2	MULTI-SECPEP	A375_MHC_IP_R1	1	523.7237548828125	2	523.238278	1044.462	-0.37499	-0.00019621	0.072645	3.8011E-05	-0.30235	-0.0001582	523.2385519126669	92.135	0.2543	92.135	91.956	92.211	0					6	4	2	0	0	0	0.91556	1	33797	33797		10.074	2.1638	1	966330			48961	938	35596	35883	47861	47861					-0.05844944671457597
SLCYPGWSAV	10	Unmodified	_SLCYPGWSAV_					0	0	0		ENST00000380472.7_2_6:2988904-2994212:+|nuORF	ENST00000380472.7_2_6:2988904-2994212:+|nuORF	ENST00000380472.7_2_6:2988904-2994212:+|nuORF	MSMS	A375_MHC_IP_R1	1	541.6580200195312	2	541.75241	1081.49027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.714	1	28.714	28.214	29.214	0								0	0	0	0.14522	1	8897	8897		26.884	3.7352	1				48962	11351	35597	35884	47862	47862					-0.047218786998428186
SLDALLSQV	9	Unmodified	_SLDALLSQV_					0	0	0		ENSG00000159479|ENST00000372457|MED8;nc|ENSG00000159479|Q96G25-2|MED8	ENSG00000159479|ENST00000372457|MED8	ENSG00000159479|ENST00000372457|MED8	MULTI-MSMS	A375_MHC_IP_R1	1	945.5402221679688	1	945.525138	944.517862	-0.42196	-0.00039897	0.44166	0.0004176	0.019696	1.8623E-05	945.5254793185301	121.95	0.60854	121.95	121.72	122.33	0					15	11	2	0	0	0	0.0017027	1	45408	45408		147.06	28.164	1	27671000			48963	6375	35598	35885	47863	47863					0.04338347832060663
SLDAPAVLRPR	11	Unmodified	_SLDAPAVLRPR_					0	0	0			REV__CIC|p.V442Gfs*2|1|0.14|ENSG00000079432|chr19:42289371-42289393|TCATCTGTGAGGAGGAAGGGGAT/-|frameshift_variant	REV__CIC|p.V442Gfs*2|1|0.14|ENSG00000079432|chr19:42289371-42289393|TCATCTGTGAGGAGGAAGGGGAT/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	598.3131713867188	2	597.851304	1193.68806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.83	1	122.28	121.78	122.78	0.44488								0	0	0	0.16108	1	46643	46643		13.042	2.9685	1		+		48964	15791	35599	35886	47864	47864					0.09895883554304419
SLDAQFQPG	9	Unmodified	_SLDAQFQPG_					0	0	0			REV__ENSG00000105556|ENST00000264819|MIER2	REV__ENSG00000105556|ENST00000264819|MIER2	MULTI-SECPEP	A375_MHC_IP_R2	2	482.1324157714844	2	481.732532	961.45051	-0.51131	-0.00024631	-0.020452	-9.8525E-06	-0.53176	-0.00025617	481.7324599226355	70.171	0.96487	70.905	70.437	71.402	0.73421					39	18	4	0	0	0	0.3213	1	26531	26531		37.974	3.8716	1	9351200	+		48965	17392	35600	35887	47865	47865					-0.03175682378889633
SLDDDNNDE	9	Unmodified	_SLDDDNNDE_					0	0	0			REV__ENSG00000183434|ENST00000310125|TFDP3	REV__ENSG00000183434|ENST00000310125|TFDP3	MSMS	A375_MHC_IP_R1	1	518.6580810546875	2	518.688715	1035.36288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.713	1	74.713	74.213	75.213	0								0	0	0	0.15486	1	27215	27215		3.9444	1.0552	1		+		48966	21757	35601	35888	47866	47866					-0.1533897283100032
SLDDHVVAV	9	Unmodified	_SLDDHVVAV_					0	0	0		nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27;ENST00000464249.1_1_6:170068797-170070787:-|nuORF;ENST00000546953.1_1_6:170070523-170070838:-|nuORF;ENST00000496752.1_1_6:170065563-170070787:-|nuORF	nc|ENSG00000184465|A2RRH5|WDR27	nc|ENSG00000184465|A2RRH5|WDR27	MULTI-SECPEP	A375_MHC_IP_R1	1	478.1480712890625	2	477.748182	953.481811	-0.59128	-0.00028248	0.32868	0.00015702	-0.26261	-0.00012546	477.74828173660734	52.617	0.60995	52.617	52.387	52.997	0					22	11	3	0	0	0	0.033126	1	18728	18728		97.075	43.499	1	5544000			48967	8587	35602	35889	47867	47867					0.0032089065518903226
SLDDHVVAV	9	Unmodified	_SLDDHVVAV_					0	0	0		nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27;ENST00000464249.1_1_6:170068797-170070787:-|nuORF;ENST00000546953.1_1_6:170070523-170070838:-|nuORF;ENST00000496752.1_1_6:170065563-170070787:-|nuORF	nc|ENSG00000184465|A2RRH5|WDR27	nc|ENSG00000184465|A2RRH5|WDR27	MULTI-SECPEP	A375_MHC_IP_R2	2	478.147705078125	2	477.748182	953.481811	-0.84429	-0.00040336	0.12204	5.8303E-05	-0.72225	-0.00034505	477.74822792080494	51.868	0.56073	52.62	52.372	52.932	0.75225					15	10	2	0	0	0	0.050875	1	19530	19530		85.357	31.781	1	5436400			48968	8587	35602	35889	47868	47868					0.0032089065518903226
SLDDLLIVL	9	Unmodified	_SLDDLLIVL_					0	0	0			REV__nc|ENSG00000134369|Q8NEY1-5|NAV1	REV__nc|ENSG00000134369|Q8NEY1-5|NAV1	MULTI-SECPEP	A375_MHC_IP_R1	1	1000.8214721679688	1	1000.59249	999.585213	0.34795	0.00034815	-2.1809	-0.0021822	-1.833	-0.001834	1000.5911203133658	128.28	0.20331	128.28	128.18	128.38	0					5	3	2	0	0	0	0.07754	1	49240	49240		64.236	0	1	8548100	+		48969	18774	35603	35890	47869	47869					0.08540378042994234
SLDDLLTNV	9	Unmodified	_SLDDLLTNV_					0	0	0		ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	MSMS	A375_MHC_IP_R2	2	495.6620178222656	2	495.261122	988.507691	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.09	1	122.5	122	123	0.41475								0	0	0	3.7403E-18	1	46751	46751		144.35	55.447	1				48970	5439	35604	35891	47870	47870					0.012977401068042127
SLDDPLERY	9	Unmodified	_SLDDPLERY_					0	0	0		nc|ENSG00000215906|A8MY62|LACTBL1;ENSG00000215906|ENST00000426928|LACTBL1	nc|ENSG00000215906|A8MY62|LACTBL1	nc|ENSG00000215906|A8MY62|LACTBL1	MULTI-SECPEP	A375_MHC_IP_R2	2	553.68701171875	2	554.269478	1106.5244	-0.66335	-0.00036767	0.74091	0.00041066	0.077564	4.2992E-05	554.2701110033038	68.277	0.96397	69.012	68.662	69.626	0.73512					39	18	4	0	0	0	0.76187	1	25807	25807		11.64	2.2929	1	5130600			48971	9649	35605	35892	47871	47871					-0.024597590072289677
SLDDTELRL	9	Unmodified	_SLDDTELRL_					0	0	0		ENSG00000136444|ENST00000258955|RSAD1;nc|ENSG00000136444|Q9HA92-2|RSAD1	ENSG00000136444|ENST00000258955|RSAD1	ENSG00000136444|ENST00000258955|RSAD1	MULTI-SECPEP	A375_MHC_IP_R2	2	531.649169921875	2	531.277303	1060.54005	-0.9798	-0.00052055	-0.18688	-9.9285E-05	-1.1667	-0.00061983	531.2775462596211	71.714	0.50559	72.448	72.01	72.516	0.73421					19	9	4	0	0	0	0.4465	1	27233	27233		24.991	6.8446	1	2430800			48972	4788	35606	35893	47872	47872					0.012205275098040147
SLDDVENGY	9	Unmodified	_SLDDVENGY_					0	0	0			REV__OTOF|p.G646D|1|0.51|ENSG00000115155|chr2:26479629-26479629|C/T|missense_variant	REV__OTOF|p.G646D|1|0.51|ENSG00000115155|chr2:26479629-26479629|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	506.1844787597656	2	506.216911	1010.41927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.114	1	44.883	44.383	45.383	0.7691								0	0	0	0.15486	1	16456	16456		13.508	1.8676	1		+		48973	27706	35607	35894	47873	47873					-0.0855230020365525
SLDDVVLFEYH	11	Unmodified	_SLDDVVLFEYH_					0	0	0			REV__KIAA1549|p.P1548L|1|0.35|ENSG00000122778|chr7:138869670-138869670|G/A|missense_variant	REV__KIAA1549|p.P1548L|1|0.35|ENSG00000122778|chr7:138869670-138869670|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	668.7547607421875	2	668.824618	1335.63468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.86	1	133.03	132.53	133.53	0.16487								0	0	0	0.10677	1	52266	52266		34.402	18.253	1		+		48974	26843	35608	35895	47874	47874					-0.019709587388433647
SLDDYASLF	9	Unmodified	_SLDDYASLF_					0	0	0			REV__ARHGAP30|p.E607K|1|0.32|ENSG00000186517|chr1:161049202-161049202|C/T|missense_variant	REV__ARHGAP30|p.E607K|1|0.32|ENSG00000186517|chr1:161049202-161049202|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	515.6587524414062	2	515.740022	1029.46549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.72	1	32.72	32.22	33.22	0								0	0	0	0.14677	1	10598	10598		26.884	2.8631	1		+		48975	15435	35609	35896	47875	47875					-0.04806235301589368
SLDEHNMTT	9	Unmodified	_SLDEHNMTT_					0	0	0			REV__ENSG00000156502|ENST00000359655|SUPV3L1	REV__ENSG00000156502|ENST00000359655|SUPV3L1	MSMS	A375_MHC_IP_R1	1	524.2008666992188	2	524.224214	1046.43387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.26	1	136.26	135.76	136.76	0								0	0	0	0.15486	1	52492	52492		7.9102	1.187	1		+		48976	19984	35610	35897	47876	47876					-0.08748551327175846
SLDEKPRIV	9	Unmodified	_SLDEKPRIV_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-SECPEP	A375_MHC_IP_R1	1	353.27294921875	3	352.873113	1055.59751	-0.20046	-7.0735E-05	-0.16578	-5.85E-05	-0.36624	-0.00012923	352.8730559825837	32.151	1.1184	32.151	31.667	32.785	0					62	21	4	0	0	0	0.11436	1	10322	10322		38.615	11.526	1	28109000			48977	3678	35611	35898	47877	47877					0.07193414506036788
SLDEKPRIV	9	Unmodified	_SLDEKPRIV_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MSMS	A375_MHC_IP_R2	2	353.27288818359375	3	352.873113	1055.59751	-0.25481	-8.9914E-05	-0.089391	-3.1544E-05	-0.3442	-0.00012146	352.87305511833745	31.427	1.0674	32.146	31.669	32.736	0.71857					58	20	4	0	0	0	0.14659	1	11052	11052		42.312	10.275	1	26981000			48978	3678	35611	35898	47878	47878					0.07193414506036788
SLDERPVAV	9	Unmodified	_SLDERPVAV_					0	0	0		nc|ENSG00000204217|Q13873-2|BMPR2;ENSG00000204217|ENST00000374580|BMPR2	nc|ENSG00000204217|Q13873-2|BMPR2	nc|ENSG00000204217|Q13873-2|BMPR2	MULTI-MSMS	A375_MHC_IP_R1	1	493.668701171875	2	493.269281	984.52401	-0.49324	-0.0002433	0.041329	2.0386E-05	-0.45191	-0.00022291	493.2692259611417	41.038	0.45339	41.038	40.813	41.266	0					13	8	2	0	0	0	0.020087	2	14132	14132;14167		83.429	33.874	1	7709500			48979	9416	35612	35899	47879;47880	47879					0.031128660635772576
SLDERPVAV	9	Unmodified	_SLDERPVAV_					0	0	0		nc|ENSG00000204217|Q13873-2|BMPR2;ENSG00000204217|ENST00000374580|BMPR2	nc|ENSG00000204217|Q13873-2|BMPR2	nc|ENSG00000204217|Q13873-2|BMPR2	MULTI-MSMS	A375_MHC_IP_R2	2	493.6685791015625	2	493.269281	984.52401	-0.56194	-0.00027719	0.14771	7.2863E-05	-0.41423	-0.00020433	493.26922341948256	40.282	0.50737	41.056	40.777	41.285	0.77451					16	9	2	0	0	0	0.10637	1	14917	14917		49.527	5.7549	1	7400600			48980	9416	35612	35899	47881	47881					0.031128660635772576
SLDEYFAQVE	10	Unmodified	_SLDEYFAQVE_					0	0	0			REV__ENSG00000023171|ENST00000635736|GRAMD1B	REV__ENSG00000023171|ENST00000635736|GRAMD1B	MULTI-MSMS	A375_MHC_IP_R1	1	602.1914672851562	2	600.774593	1199.53463	-0.28391	-0.00017056	0.99906	0.00060021	0.71515	0.00042965	600.7746650818095	97.275	0.75754	97.275	96.883	97.641	0					34	14	4	0	0	0	0.53946	1	35708	35708		25.399	2.663	1	4328600	+		48981	16274	35613	35900	47882	47882					-0.05715196072674189
SLDGAPIGV	9	Unmodified	_SLDGAPIGV_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2	nc|ENSG00000079819|O43491-3|EPB41L2	nc|ENSG00000079819|O43491-3|EPB41L2	MULTI-MSMS	A375_MHC_IP_R2	2	828.5375366210938	1	828.44616	827.438883	-0.78417	-0.00064964	-0.038006	-3.1486E-05	-0.82218	-0.00068113	828.4461386710516	77.126	1.1719	77.869	77.504	78.676	0.74293					45	22	3	0	0	0	0.010002	2	29390	29390;29538		123.1	48.167	1	37287000			48982	1704	35614	35901	47883;47884	47883					0.018261205977637474
SLDGAPIGV	9	Unmodified	_SLDGAPIGV_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2	nc|ENSG00000079819|O43491-3|EPB41L2	nc|ENSG00000079819|O43491-3|EPB41L2	MULTI-MATCH	A375_MHC_IP_R1	1		1	828.44616	827.438883	-0.2962	-0.00024538	-0.27591	-0.00022858	-0.57211	-0.00047396	828.4459226617606	77.869	1.17	77.869	77.537	78.707	0	9.3692E-05	-8.1323E-05	NaN	123.1	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38387000			48983	1704	35614	35901							0.018261205977637474
SLDGARRCFVN	11	Unmodified	_SLDGARRCFVN_					0	0	0		nc|ENSG00000165506|Q9NVR5-2|DNAAF2;ENSG00000165506|ENST00000298292|DNAAF2	nc|ENSG00000165506|Q9NVR5-2|DNAAF2	nc|ENSG00000165506|Q9NVR5-2|DNAAF2	MSMS	A375_MHC_IP_R1	1	619.3062133789062	2	619.308946	1236.60334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.43	1	122.43	121.93	122.93	0								0	0	0	0.15694	1	45560	45560		16.149	3.1066	1				48984	6961	35615	35902	47885	47885					-0.005498102539149841
SLDGDLAGRYY	11	Unmodified	_SLDGDLAGRYY_					0	0	0		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	A375_MHC_IP_R1	1	615.6937866210938	2	615.293485	1228.57242	-0.45891	-0.00028236	0.10499	6.4598E-05	-0.35392	-0.00021776	615.2935796015657	65.469	1.0685	65.469	65.156	66.224	0					56	20	5	0	0	0	8.3399E-15	1	23672	23672		187.14	133.74	1	37021000			48985	7032	35616	35903	47886	47886					-0.032726850871767965
SLDGDLAGRYY	11	Unmodified	_SLDGDLAGRYY_					0	0	0		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	A375_MHC_IP_R2	2	615.6929321289062	2	615.293485	1228.57242	-0.6325	-0.00038917	-0.10581	-6.5103E-05	-0.73831	-0.00045428	615.2933912508828	64.923	0.9652	65.661	65.308	66.273	0.73811					56	18	4	0	0	0	4.5543E-08	1	24549	24549		158.08	108.52	1	32871000			48986	7032	35616	35903	47887	47887					-0.032726850871767965
SLDGHLQAV	9	Unmodified	_SLDGHLQAV_					0	0	0		ENSG00000166886|ENST00000300131|NAB2	ENSG00000166886|ENST00000300131|NAB2	ENSG00000166886|ENST00000300131|NAB2	MULTI-SECPEP	A375_MHC_IP_R1	1	470.6480712890625	2	470.248349	938.482145	-0.13003	-6.1146E-05	0.15683	7.3748E-05	0.026799	1.2602E-05	470.24831694258006	43.058	0.45929	43.058	42.841	43.3	0					12	8	2	0	0	0	0.10103	1	14961	14961		71.922	6.6873	1	3288600			48987	7126	35617	35904	47888	47888					0.01044310375061741
SLDGHLQAV	9	Unmodified	_SLDGHLQAV_					0	0	0		ENSG00000166886|ENST00000300131|NAB2	ENSG00000166886|ENST00000300131|NAB2	ENSG00000166886|ENST00000300131|NAB2	MULTI-MATCH	A375_MHC_IP_R2	2		2	470.248349	938.482145	-0.54075	-0.00025429	0.20146	9.4736E-05	-0.33929	-0.00015955	470.24836405343916	42.255	0.30706	43.027	42.86	43.167	0.7724	-0.015485	1.5067E-05	NaN	62.573	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3102300			48988	7126	35617	35904							0.01044310375061741
SLDGKAIKV	9	Unmodified	_SLDGKAIKV_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENSG00000170748|ENST00000306904|RBMXL2;ENST00000456392.1_1_X:65176624-65176924:-|nuORF	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MSMS	A375_MHC_IP_R2	2	466.1838684082031	2	465.784567	929.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.138	1	29.837	29.337	30.337	0.69872								0	0	0	0.06826	1	10151	10151		49.554	13.427	1				48989	5675	35618	35905	47889	47889					0.08698644448600135
SLDGVPFLMH	10	Unmodified	_SLDGVPFLMH_					0	0	0		ENSG00000158555|ENST00000336898|GDPD5;nc|ENSG00000158555|Q8WTR4-5|GDPD5;nc|ENSG00000158555|Q8WTR4-4|GDPD5;nc|ENSG00000158555|Q8WTR4-3|GDPD5;nc|ENSG00000158555|Q8WTR4-2|GDPD5;ENST00000533911.1_1_11:75154120-75160980:-|nuORF;ENST00000527322.5_1_11:75154120-75168815:-|nuORF	ENSG00000158555|ENST00000336898|GDPD5;ENST00000533911.1_1_11:75154120-75160980:-|nuORF	ENSG00000158555|ENST00000336898|GDPD5	MULTI-SECPEP	A375_MHC_IP_R2	2	557.6636962890625	2	558.281334	1114.54812	-1.161	-0.00064819	1.3371	0.00074649	0.17608	9.8302E-05	558.2829519417578	28.407	0.15304	29.086	29.01	29.163	0.67857					4	2	2	0	0	0	0.85226	1	9805	9805		20.454	0	1	2283000			48990	6314;13096	35619	35906	47890	47890					-0.004576167744062332
SLDHIHEY	8	Unmodified	_SLDHIHEY_					0	0	0			REV__ENSG00000203734|ENST00000541398|ECT2L	REV__ENSG00000203734|ENST00000541398|ECT2L	MULTI-SECPEP	A375_MHC_IP_R2	2	506.6955261230469	2	507.237981	1012.46141	-0.67169	-0.00034071	-0.79182	-0.00040164	-1.4635	-0.00074235	507.7394723965016	63.933	0.45689	64.674	64.292	64.749	0.74022					12	8	2	0	0	0	0.972	1	24236	24236		8.5933	3.8373	1	1030600	+		48991	22469	35620	35907	47891	47891					-0.04432280004630229
SLDHVVPI	8	Unmodified	_SLDHVVPI_					0	0	0			REV__ENSG00000182752|ENST00000328252|PAPPA	REV__ENSG00000182752|ENST00000328252|PAPPA	MULTI-MSMS	A375_MHC_IP_R1	1	440.604248046875	2	440.25036	878.486168	-0.19369	-8.5273E-05	0.006227	2.7415E-06	-0.18747	-8.2532E-05	440.25026213653297	76.869	0.51131	76.869	76.673	77.184	0					12	9	2	0	0	0	0.72761	1	28010	28010		26.341	0	1	889670	+		48992	21706	35621	35908	47892	47892					0.04206399868758126
SLDHWQMG	8	Unmodified	_SLDHWQMG_					0	0	0			REV__ENST00000490918.5_1_6:3118974-3138432:+|nuORF	REV__ENST00000490918.5_1_6:3118974-3138432:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	487.61407470703125	2	487.213452	972.412351	-0.27105	-0.00013206	0.98314	0.000479	0.71209	0.00034694	487.21387024641217	99.599	0.60553	99.599	99.319	99.925	0					16	11	2	0	0	0	0.75805	1	36601	36601		18.135	18.135	1	2306900	+		48993	25393	35622	35909	47893	47893					-0.07495891565213242
SLDITSTHFS	10	Unmodified	_SLDITSTHFS_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MSMS	A375_MHC_IP_R1	1	554.1951904296875	2	554.269478	1106.5244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.775	1	55.775	55.275	56.275	0								0	0	0	0.15038	1	19960	19960		17.113	0.1706	1		+		48994	18059	35623	35910	47894	47894					-0.024597590072289677
SLDKFAVGSPY	11	Unmodified	_SLDKFAVGSPY_					0	0	0			REV__FEZF1|p.P315Tfs*5|1|0.13|ENSG00000128610|chr7:122302925-122302926|-/T|frameshift_variant	REV__FEZF1|p.P315Tfs*5|1|0.13|ENSG00000128610|chr7:122302925-122302926|-/T|frameshift_variant	MSMS	A375_MHC_IP_R1	1	592.7214965820312	2	592.303321	1182.59209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.439	1	61.439	60.939	61.939	0								0	0	0	0.15541	1	22150	22150		17.113	0	1		+		48995	18461	35624	35911	47895	47895					0.008096909235973726
SLDKFLANV	9	Unmodified	_SLDKFLANV_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	A375_MHC_IP_R1	1	503.66851806640625	2	503.782025	1005.5495	-0.52246	-0.0002632	-0.18706	-9.4239E-05	-0.70952	-0.00035744	503.7819484276132	86.804	1.7259	86.804	86.274	88	0					89	33	4	0	0	0	0.024574	1	31715	31715		79.596	19.522	1	34999000		+	48996	579	35625	35912	47896	47896					0.046943405859906306
SLDKFLANV	9	Unmodified	_SLDKFLANV_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	A375_MHC_IP_R1	1	1006.953857421875	1	1006.55677	1005.5495	0.037076	3.732E-05	-2.4109	-0.0024267	-2.3738	-0.0023894	1006.5540459118365	86.742	0.40528	86.742	86.527	86.933	0					12	7	2	0	0	0	0.062639	1	31854	31854		59.368	13.669	1	2512900		+	48997	579	35625	35912	47897	47897					0.046943405859906306
SLDKFLANV	9	Unmodified	_SLDKFLANV_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-SECPEP	A375_MHC_IP_R2	2	503.15948486328125	2	503.782025	1005.5495	-0.49502	-0.00024938	-0.25194	-0.00012692	-0.74696	-0.00037631	503.7819727587438	85.835	2.5469	86.571	85.523	88.07	0.7359					108	49	4	0	0	0	0.061442	1	32778	32778		82.529	13.424	1	37702000		+	48998	579	35625	35912	47898	47898					0.046943405859906306
SLDKFLANV	9	Unmodified	_SLDKFLANV_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MATCH	A375_MHC_IP_R2	2		1	1006.55677	1005.5495	0.19149	0.00019274	-2.0652	-0.0020787	-1.8737	-0.001886	1006.5548259433774	85.884	0.50736	86.617	86.338	86.845	0.733	-0.062528	0.00017562	NaN	59.368	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3895500		+	48999	579	35625	35912							0.046943405859906306
SLDKHREWLEY	11	Unmodified	_SLDKHREWLEY_					0	0	0		nc|ENSG00000116138|Q9Y2G8-2|DNAJC16;ENSG00000116138|ENST00000375847|DNAJC16;ENST00000475133.5_1_1:15892828-15894669:+|nuORF	nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	MSMS	A375_MHC_IP_R2	2	492.4774475097656	3	492.580769	1474.72048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.524	1	49.282	48.782	49.782	0.75737								0	0	0	0.16269	1	18222	18222		4.7159	3.3863	1				49000	3374	35626	35913	47899	47899					0.0021062616667677503
SLDKIDRPL	9	Unmodified	_SLDKIDRPL_					0	0	0			REV__ENST00000299167.12_1_16:47682508-47683069:+|nuORF	REV__ENST00000299167.12_1_16:47682508-47683069:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	353.58544921875	3	352.873113	1055.59751	-0.20046	-7.0735E-05	-0.16578	-5.85E-05	-0.36624	-0.00012923	352.8730559825837	32.151	1.1184	32.151	31.667	32.785	0					62	21	4	0	0	0	0.21241	1	10373	10373		37.075	6.3712	1	28109000	+		49001	23403	35627	35914	47900	47900					0.07193414506036788
SLDKNSLF	8	Unmodified	_SLDKNSLF_					0	0	0		tr|U7STV5|U7STV5_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01203PE=4SV=1	tr|U7STV5|U7STV5_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01203PE=4SV=1	tr|U7STV5|U7STV5_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01203PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	462.64532470703125	2	462.245275	922.475997	-0.10367	-4.7922E-05	0.34386	0.00015895	0.24019	0.00011103	462.2453698885494	51.398	0.65972	51.398	51.119	51.778	0					31	12	3	0	0	0	0.70206	1	18226	18226		34.102	0	1	7841400			49002	29715	35628	35915	47901	47901					0.011657921435244134
SLDKNSLF	8	Unmodified	_SLDKNSLF_					0	0	0		tr|U7STV5|U7STV5_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01203PE=4SV=1	tr|U7STV5|U7STV5_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01203PE=4SV=1	tr|U7STV5|U7STV5_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01203PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	462.6452331542969	2	462.245275	922.475997	-0.65735	-0.00030386	0.57837	0.00026735	-0.078979	-3.6508E-05	462.24549180955194	50.505	0.76083	51.259	50.854	51.615	0.75406					34	14	3	0	0	0	0.66714	1	18954	18954		42.095	0	1	7529000			49003	29715	35628	35915	47902	47902					0.011657921435244134
SLDKNSLF	8	Unmodified	_SLDKNSLF_					0	0	0		tr|U7STV5|U7STV5_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01203PE=4SV=1	tr|U7STV5|U7STV5_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01203PE=4SV=1	tr|U7STV5|U7STV5_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01203PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	462.245275	922.475997	-0.10367	-4.7922E-05	0.34386	0.00015895	0.24019	0.00011103	462.2453698885494	51.398	0.65972	51.398	51.119	51.778	0	0.069539	-0.00011721	NaN	42.095	31	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7841400			49004	29715	35628	35915							0.011657921435244134
SLDKQQQQL	9	Unmodified	_SLDKQQQQL_					0	0	0		ENST00000393077.2_1_10:114575138-114575192:+|nuORF	ENST00000393077.2_1_10:114575138-114575192:+|nuORF	ENST00000393077.2_1_10:114575138-114575192:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	544.234619140625	2	544.290745	1086.56694	-1.1898	-0.00064758	0.066847	3.6384E-05	-1.1229	-0.0006112	544.2907492104032	56.574	0.81453	57.324	56.898	57.712	0.75015					46	15	4	0	0	0	0.65721	1	21242	21242		10.824	2.0785	1	23062000			49005	11433	35629	35916	47903	47903					0.027116361210119067
SLDKRLVLY	9	Unmodified	_SLDKRLVLY_					0	0	0			REV__ENSG00000184924|ENST00000328379|PTRHD1	REV__ENSG00000184924|ENST00000328379|PTRHD1	MULTI-MSMS	A375_MHC_IP_R1	1	370.6098937988281	3	369.557125	1105.64954	0.11479	4.2422E-05	0.44669	0.00016508	0.56148	0.0002075	369.55726015930856	52.971	1.0152	52.971	52.336	53.352	0					43	19	4	0	0	0	0.70886	1	18912	18912		3.8763	1.2451	1	30849000	+		49006	21847	35630	35917	47904	47904					0.10094577919812764
SLDKRLVLY	9	Unmodified	_SLDKRLVLY_					0	0	0			REV__ENSG00000184924|ENST00000328379|PTRHD1	REV__ENSG00000184924|ENST00000328379|PTRHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	554.0087890625	2	553.832049	1105.64954	-0.57308	-0.00031739	0.29517	0.00016347	-0.27791	-0.00015392	553.8322798703527	55.101	0.55926	55.101	54.771	55.33	0					12	10	2	0	0	0	0.69504	1	19604	19604		12.532	0	1	879790	+		49007	21847	35630	35917	47905	47905					0.10094577919812764
SLDKTIRLW	9	Unmodified	_SLDKTIRLW_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	A375_MHC_IP_R1	1	566.3128662109375	2	566.329673	1130.64479	-0.38385	-0.00021739	0.20404	0.00011556	-0.17981	-0.00010183	566.3295829013197	73.361	0.45728	73.361	73.082	73.539	0					11	8	2	0	0	0	0.41856	1	26666	26666		24.991	9.7425	1	1902500			49008	6778	35631	35918	47906	47906					0.08469693777033172
SLDKTIRLW	9	Unmodified	_SLDKTIRLW_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	A375_MHC_IP_R1	1	378.6229553222656	3	377.888874	1130.64479	0.33914	0.00012816	0.033484	1.2653E-05	0.37263	0.00014081	377.88883728824214	73.325	0.50777	73.325	73.031	73.539	0					23	9	3	0	0	0	0.12591	1	26697	26697		46.022	23.247	1	3501500			49009	6778	35631	35918	47907	47907					0.08469693777033172
SLDKTIRLW	9	Unmodified	_SLDKTIRLW_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-SECPEP	A375_MHC_IP_R2	2	378.2886962890625	3	377.888874	1130.64479	0.0012055	4.5554E-07	-0.067324	-2.5441E-05	-0.066118	-2.4985E-05	377.88882790978636	72.408	0.55708	73.143	72.872	73.429	0.73541					24	10	3	0	0	0	0.25548	1	27469	27469		49.742	22.654	1	3427300			49010	6778	35631	35918	47908	47908					0.08469693777033172
SLDKTIRLW	9	Unmodified	_SLDKTIRLW_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-SECPEP	A375_MHC_IP_R2	2	566.7291259765625	2	566.329673	1130.64479	-0.57167	-0.00032376	-0.17211	-9.7472E-05	-0.74379	-0.00042123	566.3293930414793	72.383	0.40602	73.119	72.922	73.328	0.73541					13	7	3	0	0	0	0.67323	1	27512	27512		24.991	24.991	1	1694700			49011	6778	35631	35918	47909	47909					0.08469693777033172
SLDKVSHTL	9	Unmodified	_SLDKVSHTL_					0	0	0		ENST00000513313.5_1_4:189321940-189407012:+|nuORF	ENST00000513313.5_1_4:189321940-189407012:+|nuORF	ENST00000513313.5_1_4:189321940-189407012:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	500.6759338378906	2	500.277106	998.53966	-0.54635	-0.00027332	-0.61799	-0.00030916	-1.1643	-0.00058249	500.27659102529185	28.11	1.2615	28.11	27.735	28.996	0					26	19	2	0	0	0	0.11849	1	8603	8603		61.602	17.744	1	8572100			49012	12929	35632	35919	47910	47910					0.04033152580632304
SLDKVSHTL	9	Unmodified	_SLDKVSHTL_					0	0	0		ENST00000513313.5_1_4:189321940-189407012:+|nuORF	ENST00000513313.5_1_4:189321940-189407012:+|nuORF	ENST00000513313.5_1_4:189321940-189407012:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	500.6766052246094	2	500.277106	998.53966	-0.49774	-0.00024901	-0.64264	-0.0003215	-1.1404	-0.0005705	500.2765769979626	27.46	1.0666	28.138	27.741	28.808	0.67857					19	13	2	0	0	0	0.036758	1	9344	9344		79.596	27.328	1	8827200			49013	12929	35632	35919	47911	47911					0.04033152580632304
SLDKYFFW	8	Unmodified	_SLDKYFFW_					0	0	0			REV__ENST00000489097.5_1_1:6526697-6527309:-|nuORF	REV__ENST00000489097.5_1_1:6526697-6527309:-|nuORF	MSMS	A375_MHC_IP_R2	2	553.3590698242188	2	553.271293	1104.52803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.515	1	93.254	92.754	93.754	0.73902								0	0	0	0.16876	1	35183	35183		5.7604	0.52976	1		+		49014	25366	35633	35920	47912	47912					-0.020050444426942704
SLDLEQNAGHY	11	Unmodified	_SLDLEQNAGHY_					0	0	0			REV__ENSG00000198740|ENST00000430262|ZNF652	REV__ENSG00000198740|ENST00000430262|ZNF652	MSMS	A375_MHC_IP_R2	2	623.7439575195312	2	623.788566	1245.56258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.621	1	100.38	99.884	100.88	0.76278								0	0	0	0.16179	1	37787	37787		9.3831	2.66	1		+		49015	22408	35634	35921	47913	47913					-0.05037873092555856
SLDLGIWKL	9	Unmodified	_SLDLGIWKL_					0	0	0			REV__ENSG00000120438|ENST00000321394|TCP1;REV__ENST00000414406.2_1_12:20095430-20095949:+|nuORF	REV__ENSG00000120438|ENST00000321394|TCP1	MULTI-SECPEP	A375_MHC_IP_R1	1	522.1543579101562	2	522.808042	1043.60153	-0.30469	-0.0001593	-0.22382	-0.00011702	-0.52852	-0.00027631	522.8077414703263	109.93	0.40852	109.93	109.63	110.04	0					13	7	2	0	0	0	0.73363	1	40251	40251		10.824	0	1	968060	+		49016	18122;24507	35635	35922	47914	47914					0.08147503999748551
SLDLIESLL	9	Unmodified	_SLDLIESLL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q831Sfs*11|1|0.38|ENSG00000125107|chr16:58555897-58555898|-/A|frameshift_variant	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	A375_MHC_IP_R1	1	502.1894836425781	2	501.789515	1001.56448	-0.63426	-0.00031827	1.1534	0.00057879	0.51918	0.00026052	501.789924176264	133.33	0.25607	133.33	133.2	133.46	0					9	4	3	0	0	0	0.43707	1	51441	51441		28.487	0	1	6704700			49017	3941	35636	35923	47915	47915					0.06375787663341725
SLDLKYETNYL	11	Unmodified	_SLDLKYETNYL_					0	0	0			REV__tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	REV__tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	680.2454833984375	2	679.84555	1357.67655	-0.5548	-0.00037718	0.11197	7.6121E-05	-0.44284	-0.00030106	679.8455791154109	55.866	1.3216	55.866	55.533	56.855	0					75	25	5	0	0	0	0.26393	1	19941	19941		49.527	15.126	1	128610000	+		49018	28685	35637	35924	47916	47916					0.01201596949681516
SLDLNMNKQ	9	Unmodified	_SLDLNMNKQ_					0	0	0		NUP210L|p.D596N|1|0.06|ENSG00000143552|chr1:154104045-154104045|C/T|missense_variant	NUP210L|p.D596N|1|0.06|ENSG00000143552|chr1:154104045-154104045|C/T|missense_variant	NUP210L|p.D596N|1|0.06|ENSG00000143552|chr1:154104045-154104045|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	531.6978759765625	2	531.766049	1061.51754	-0.62835	-0.00033413	-2.6501	-0.0014093	-3.2785	-0.0017434	531.7650866256907	55.151	0.50803	55.151	54.873	55.381	0					15	9	2	0	0	0	0.50702	1	19800	19800		19.257	0	1	2985400			49019	15039	35638	35925	47917	47917					-0.010753951594551836
SLDLVSTIW	9	Unmodified	_SLDLVSTIW_					0	0	0			REV__ENST00000278968.10_3_11:117070126-117070369:+|nuORF	REV__ENST00000278968.10_3_11:117070126-117070369:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	517.681396484375	2	517.281857	1032.54916	-0.69782	-0.00036097	0.14034	7.2595E-05	-0.55748	-0.00028838	517.2819487419068	64.263	2.7476	65.003	64.394	67.142	0.74023					112	53	3	0	0	0	0.35581	1	24676	24676		26.884	1.4843	1	10989000	+		49020	23310	35639	35926	47918	47918					0.03418920866147346
SLDMLFTY	8	Unmodified	_SLDMLFTY_					0	0	0			REV__nc|ENSG00000174844|Q6ZR08|DNAH12	REV__nc|ENSG00000174844|Q6ZR08|DNAH12	MSMS	A375_MHC_IP_R2	2	495.1337890625	2	495.236061	988.45757	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.922	1	58.671	58.171	59.171	0.74894								0	0	0	0.16876	1	21907	21907		19.439	2.3524	1		+		49021	27370	35640	35927	47919	47919					-0.03712085822678546
SLDMPQKIV	9	Unmodified	_SLDMPQKIV_					0	0	0			REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MSMS	A375_MHC_IP_R2	2	515.7124633789062	2	515.78371	1029.55287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.27	1	105.03	104.53	105.53	0.76308								0	0	0	0.14905	1	39456	39456		23.148	1.4018	1		+		49022	19998	35641	35928	47920	47920					0.03927267368339926
SLDMSLVPL	9	Unmodified	_SLDMSLVPL_					0	0	0			REV__ENST00000555284.1_1_14:81736911-81745120:-|nuORF	REV__ENST00000555284.1_1_14:81736911-81745120:-|nuORF	MSMS	A375_MHC_IP_R1	1	487.69488525390625	2	487.764986	973.515419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.385	1	99.385	98.885	99.885	0								0	0	0	0.14905	1	36509	36509		23.148	0	1		+		49023	26096	35642	35929	47921	47921					0.02760176102742662
SLDNILKG	8	Unmodified	_SLDNILKG_					0	0	0		tr|U7SIQ0|U7SIQ0_FUSNUPyrrolidone-carboxylatepeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pcpPE=3SV=1	tr|U7SIQ0|U7SIQ0_FUSNUPyrrolidone-carboxylatepeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pcpPE=3SV=1	tr|U7SIQ0|U7SIQ0_FUSNUPyrrolidone-carboxylatepeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pcpPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	430.6484069824219	2	430.247818	858.481082	-0.028565	-1.229E-05	1.2315	0.00052985	1.2029	0.00051756	430.24817785811905	139.86	0.30672	139.92	139.75	140.06	0.059906					11	5	3	0	0	0	0.77797	1	54785	54785		2.3027	0	1	3166800			49024	29429	35643	35930	47922	47922					0.046180960061633414
SLDNLIKRY	9	Unmodified	_SLDNLIKRY_					0	0	0			REV__ENST00000480189.5_1_2:208424955-208436489:+|nuORF	REV__ENST00000480189.5_1_2:208424955-208436489:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	374.9394226074219	3	374.548629	1120.62406	0.33232	0.00012447	-0.1297	-4.8578E-05	0.20262	7.589E-05	374.54856850834926	19.985	0.71026	19.985	19.674	20.384	0					20	13	2	0	0	0	0.57432	1	4983	4983		16.149	1.7437	1	3843000	+		49025	18033	35644	35931	47923	47923					0.06857103397396713
SLDNLKASV	9	Unmodified	_SLDNLKASV_					0	0	0		ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	MULTI-SECPEP	A375_MHC_IP_R2	2	474.163818359375	2	473.763832	945.513111	-0.57212	-0.00027105	0.35814	0.00016967	-0.21398	-0.00010138	473.7639110803781	45.561	0.45255	46.326	46.15	46.603	0.76518					18	8	3	0	0	0	0.016541	1	17033	17033		107.1	20.768	1	2882500			49026	4743	35645	35932	47924	47924					0.038174636892904346
SLDNQCDQYY	10	Unmodified	_SLDNQCDQYY_					0	0	0			REV__ENST00000466027.1_1_13:96289346-96294343:-|nuORF	REV__ENST00000466027.1_1_13:96289346-96294343:-|nuORF	MSMS	A375_MHC_IP_R2	2	624.6773071289062	2	624.74551	1247.47647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.37	1	60.117	59.617	60.617	0.74714								0	0	0	0.15417	1	22469	22469		7.2892	1.5574	1		+		49027	25031	35646	35933	47925	47925					-0.13737200989589837
SLDNRINEV	9	Unmodified	_SLDNRINEV_					0	0	0		nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154263|ENST00000690296|ABCA10;ENST00000519732.5_1_17:67144970-67171813:-|nuORF;ENST00000522406.5_1_17:67144970-67178294:-|nuORF;ENST00000515578.5_1_4:420284-429666:-|nuORF	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-MSMS	A375_MHC_IP_R1	1	530.6749267578125	2	530.275095	1058.53564	-0.58642	-0.00031097	0.3312	0.00017563	-0.25522	-0.00013534	530.2752522856277	37.741	0.61363	37.741	37.454	38.067	0					21	11	3	0	0	0	0.0012247	1	12730	12730		195.45	92.099	1	5907300			49028	6077	35647	35934	47926	47926					0.008710630869018132
SLDNRINEV	9	Unmodified	_SLDNRINEV_					0	0	0		nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154263|ENST00000690296|ABCA10;ENST00000519732.5_1_17:67144970-67171813:-|nuORF;ENST00000522406.5_1_17:67144970-67178294:-|nuORF;ENST00000515578.5_1_4:420284-429666:-|nuORF	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-MSMS	A375_MHC_IP_R2	2	530.6752319335938	2	530.275095	1058.53564	-1.2494	-0.00066255	0.78231	0.00041484	-0.46714	-0.00024771	530.2754579394729	36.955	0.50714	37.726	37.41	37.917	0.7709					19	9	3	0	0	0	0.0097232	1	13483	13483		184.36	77.415	1	6113800			49029	6077	35647	35934	47927	47927					0.008710630869018132
SLDPCAPWL	9	Unmodified	_SLDPCAPWL_					0	0	0			REV__ENST00000378756.7_1_1:1469876-1469981:+|nuORF	REV__ENST00000378756.7_1_1:1469876-1469981:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	501.6609802246094	2	501.241678	1000.4688	-0.63294	-0.00031726	0.37076	0.00018584	-0.26218	-0.00013142	501.24178304089656	66.671	3.2546	67.407	66.627	69.881	0.73631					90	63	2	0	0	0	0.68216	1	25553	25553		8.5933	0.68312	1	2394400	+		49030	24185	35648	35935	47928	47928					-0.031412637285598066
SLDPEGDQEYK	11	Unmodified	_SLDPEGDQEYK_					0	0	0			REV__ENST00000456813.1_1_1:39325817-39341821:+|nuORF	REV__ENST00000456813.1_1_1:39325817-39341821:+|nuORF	MSMS	A375_MHC_IP_R2	2	640.7882690429688	2	640.785689	1279.55683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.55	1	121.99	121.49	122.49	0.44488								0	0	0	0.15541	1	46506	46506		17.113	0	1		+		49031	24938	35649	35936	47929	47929					-0.07177016394894054
SLDPFCPAL	9	Unmodified	_SLDPFCPAL_					0	0	0		ENST00000333421.6_1_9:74489992-74525629:-|nuORF	ENST00000333421.6_1_9:74489992-74525629:-|nuORF	ENST00000333421.6_1_9:74489992-74525629:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	482.13604736328125	2	481.736228	961.457904	-0.47057	-0.00022669	-0.18625	-8.9724E-05	-0.65682	-0.00031641	481.73608029820684	86.987	3.1888	87.72	87.049	90.238	0.733					89	62	2	0	0	0	0.3054	1	32974	32974		30.225	2.0516	1	2767200			49032	10787	35650	35937	47930	47930					-0.02436666102835261
SLDPFEDEAP	10	Unmodified	_SLDPFEDEAP_					0	0	0			REV__ENSG00000166165|ENST00000348956|CKB	REV__ENSG00000166165|ENST00000348956|CKB	MULTI-SECPEP	A375_MHC_IP_R1	1	560.583740234375	2	560.245669	1118.47678	-0.22405	-0.00012552	-3.6543	-0.0020473	-3.8783	-0.0021728	560.7453923537315	92.769	0.30428	92.769	92.617	92.922	0					9	5	3	0	0	0	0.9269	1	34134	34134		3.5965	0	1	1294600	+		49033	20655	35651	35938	47931	47931					-0.07771457998092046
SLDPFNPLD	9	Unmodified	_SLDPFNPLD_					0	0	0			REV__ENSG00000101230|ENST00000262487|ISM1	REV__ENSG00000101230|ENST00000262487|ISM1	MULTI-MSMS	A375_MHC_IP_R2	2	509.6787109375	2	509.248015	1016.48148	-0.89712	-0.00045686	4.1349	0.0021057	3.2378	0.0016488	509.2498091010609	54.988	0.40777	55.738	55.422	55.83	0.75075					12	7	2	0	0	0	0.4867	1	20712	20712		20.454	1.1966	1	1393000	+		49034	17151	35652	35939	47932	47932					-0.026105290646682988
SLDPGHSF	8	Unmodified	_SLDPGHSF_					0	0	0			REV__ENSG00000138741|ENST00000379645|TRPC3	REV__ENSG00000138741|ENST00000379645|TRPC3	MULTI-SECPEP	A375_MHC_IP_R1	1	430.6009216308594	2	430.200867	858.387182	-0.097506	-4.1947E-05	0.13592	5.8472E-05	0.038413	1.6525E-05	430.2008254033746	31.675	0.50985	31.675	31.514	32.024	0					16	9	2	0	0	0	0.86765	1	10177	10177		12.532	0	1	3910300	+		49035	19116	35653	35940	47933	47933					-0.047676230961315014
SLDPGLFDDS	10	Unmodified	_SLDPGLFDDS_					0	0	0		ENSG00000189337|ENST00000376030|KAZN	ENSG00000189337|ENST00000376030|KAZN	ENSG00000189337|ENST00000376030|KAZN	MULTI-MSMS	A375_MHC_IP_R2	2	533.6397094726562	2	533.240386	1064.46622	-0.9617	-0.00051282	0.45118	0.00024059	-0.51051	-0.00027223	533.240391403152	71.304	0.65837	72.038	71.706	72.364	0.73421					22	12	3	0	0	0	0.70651	1	27032	27032		9.3831	0	1	3816300			49036	8979	35654	35941	47934	47934					-0.06343440652517529
SLDPPEHLF	9	Unmodified	_SLDPPEHLF_					0	0	0		ENSG00000151461|ENST00000357604|UPF2	ENSG00000151461|ENST00000357604|UPF2	ENSG00000151461|ENST00000357604|UPF2	MULTI-SECPEP	A375_MHC_IP_R1	1	527.6624145507812	2	527.763832	1053.51311	-0.59189	-0.00031238	-0.013189	-6.9605E-06	-0.60508	-0.00031934	527.7641900310617	76.697	0.76436	76.697	76.522	77.286	0					18	14	2	0	0	0	0.69504	1	28175	28175		12.532	0	1	1264300			49037	5907	35655	35942	47935	47935					-0.011505363107289668
SLDPPPVAAL	10	Unmodified	_SLDPPPVAAL_					0	0	0		ENST00000543253.5_1_X:101969373-101969559:+|nuORF	ENST00000543253.5_1_X:101969373-101969559:+|nuORF	ENST00000543253.5_1_X:101969373-101969559:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	490.67657470703125	2	490.276575	978.538597	0.071807	3.5205E-05	0.28561	0.00014003	0.35742	0.00017524	490.2764126603181	69.217	0.45782	69.217	68.969	69.427	0					14	8	2	0	0	0	0.69172	1	25118	25118		25.399	0	1	2070700			49038	13311	35656	35943	47936	47936					0.04846938211710494
SLDPRFRQYTY	11	Unmodified	_SLDPRFRQYTY_					0	0	0		ENSG00000004139|ENST00000585482|SARM1;nc|ENSG00000004139|Q6SZW1-2|SARM1;ENST00000379061.8_1_17:26708312-26722930:+|nuORF	ENSG00000004139|ENST00000585482|SARM1	ENSG00000004139|ENST00000585482|SARM1	MULTI-MSMS	A375_MHC_IP_R2	2	723.91259765625	2	723.362233	1444.70991	-0.67116	-0.00048549	-0.65087	-0.00047081	-1.322	-0.00095631	723.361602254562	68.354	0.45499	69.089	68.918	69.373	0.73511					18	8	3	0	0	0	0.56199	1	25885	25885		26.268	5.8536	1	4494900			49039	864	35657	35944	47937	47937					0.00534643512241928
SLDPTKTLL	9	Unmodified	_SLDPTKTLL_					0	0	0			REV__ENSG00000155816|ENST00000319653|FMN2	REV__ENSG00000155816|ENST00000319653|FMN2	MULTI-SECPEP	A375_MHC_IP_R1	1	494.9282531738281	2	494.289682	986.564812	-0.30171	-0.00014913	-0.20182	-9.9758E-05	-0.50353	-0.00024889	494.28949556121836	82.999	0.70902	82.999	82.722	83.432	0					32	13	3	0	0	0	0.11436	1	30453	30453		68.081	13.307	1	12331000	+		49040	19939	35658	35945	47938	47938					0.07099207383214434
SLDPTSHAL	9	Unmodified	_SLDPTSHAL_					0	0	0		ENST00000255631.9_1_19:55773740-55773947:-|nuORF	ENST00000255631.9_1_19:55773740-55773947:-|nuORF	ENST00000255631.9_1_19:55773740-55773947:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	471.1760559082031	2	470.740357	939.46616	-0.71798	-0.00033798	1.8938	0.00089147	1.1758	0.00055349	470.7411179280372	40.535	0.50779	41.31	41.082	41.59	0.77451					16	9	2	0	0	0	0.11296	1	15027	15027		48.346	16.04	1	3450400			49041	10232	35659	35946	47939	47939					-0.005993958618546458
SLDPYRSV	8	Unmodified	_SLDPYRSV_					0	0	0			REV__KMT2C|p.E4343Kfs*13|1|0.36|ENSG00000055609|chr7:152148900-152148900|C/-|frameshift_variant	REV__KMT2C|p.E4343Kfs*13|1|0.36|ENSG00000055609|chr7:152148900-152148900|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	469.1423034667969	2	468.742899	935.471246	-0.60747	-0.00028475	0.1306	6.1219E-05	-0.47686	-0.00022353	468.74277161982747	76.395	0.60916	77.136	76.792	77.401	0.74052					30	11	4	0	0	0	0.93661	1	28966	28966		6.7232	2.3939	1	4055700	+		49042	16415	35660	35947	47940	47940					0.0009290800077224048
SLDQKGWPS	9	Unmodified	_SLDQKGWPS_					0	0	0			REV__ENSG00000011451|ENST00000673675|WIZ	REV__ENSG00000011451|ENST00000673675|WIZ	MULTI-MSMS	A375_MHC_IP_R2	2	509.6730651855469	2	509.253631	1016.49271	-0.79949	-0.00040714	0.013083	6.6626E-06	-0.78641	-0.00040048	509.2534280258504	32.702	0.71139	33.439	32.909	33.62	0.73691					24	13	3	0	0	0	0.58047	1	11463	11463		15.847	0.078963	1	11210000	+		49043	16210	35661	35948	47941	47941					-0.014877069705107715
SLDQLDDAF	9	Unmodified	_SLDQLDDAF_					0	0	0		nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-7|DYSF;ENSG00000135636|ENST00000410020|DYSF	nc|ENSG00000135636|O75923-3|DYSF	nc|ENSG00000135636|O75923-3|DYSF	MULTI-SECPEP	A375_MHC_IP_R2	2	511.69952392578125	2	512.235104	1022.45566	-0.67708	-0.00034682	0.6746	0.00034555	-0.0024833	-1.272E-06	512.2353405690812	64.051	0.55898	64.792	64.547	65.106	0.74022					12	10	2	0	0	0	0.75466	1	24292	24292		7.9102	2.6795	1	663440			49044	4700	35662	35949	47942	47942					-0.05467423306959063
SLDQNIWSEG	10	Unmodified	_SLDQNIWSEG_					0	0	0			REV__ENST00000599889.1_1_19:58877464-58877869:+|nuORF	REV__ENST00000599889.1_1_19:58877464-58877869:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	575.16455078125	2	574.76456	1147.51457	-0.26788	-0.00015397	-0.039448	-2.2674E-05	-0.30733	-0.00017664	574.7643836851156	80.643	0.61249	81.388	81.112	81.724	0.74473					22	11	3	0	0	0	0.62155	1	30624	30624		19.257	4.4187	1	2855000	+		49045	26497	35663	35950	47943	47943					-0.05328947012617391
SLDQNIWSEG	10	Unmodified	_SLDQNIWSEG_					0	0	0			REV__ENST00000599889.1_1_19:58877464-58877869:+|nuORF	REV__ENST00000599889.1_1_19:58877464-58877869:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	574.76456	1147.51457	-0.21676	-0.00012459	-0.56387	-0.00032409	-0.78063	-0.00044868	574.7642647391665	81.422	0.70822	81.422	81.049	81.758	0	0.016942	-0.00017074	NaN	19.257	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3687300	+		49046	26497	35663	35950							-0.05328947012617391
SLDQPTQTV	9	Unmodified	_SLDQPTQTV_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	A375_MHC_IP_R2	2	494.6710205078125	2	494.750921	987.48729	-0.57975	-0.00028683	-0.11609	-5.7438E-05	-0.69584	-0.00034427	494.7509152290008	40.485	3.1506	41.26	40.828	43.979	0.77451					145	61	4	0	0	0	0.066859	1	15435	15435		57.722	9.9733	1	577040000			49047	8551	35664	35951	47944	47944					-0.0069543055299163825
SLDRLSQHF	9	Unmodified	_SLDRLSQHF_					0	0	0			REV__ENSG00000100629|ENST00000555265|CEP128	REV__ENSG00000100629|ENST00000555265|CEP128	MULTI-SECPEP	A375_MHC_IP_R1	1	551.7056884765625	2	551.78563	1101.55671	-0.4225	-0.00023313	-1.8023	-0.0009945	-2.2248	-0.0012276	551.7855593679235	42.456	0.60694	42.456	42.132	42.739	0					36	11	5	0	0	0	0.4261	1	14700	14700		18.146	3.3081	1	12659000	+		49048	17114	35665	35952	47945	47945					0.00999073186426358
SLDRPLSHW	9	Unmodified	_SLDRPLSHW_					0	0	0		ENSG00000100167|ENST00000644076|SEPTIN3	ENSG00000100167|ENST00000644076|SEPTIN3	ENSG00000100167|ENST00000644076|SEPTIN3	MSMS	A375_MHC_IP_R1	1	555.6427001953125	2	555.788173	1109.56179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.125	1	57.125	56.625	57.625	0								0	0	0	0.15486	1	20483	20483		12.241	0.60036	1				49049	2129	35666	35953	47946	47946					0.011393770490485622
SLDRTIKVW	9	Unmodified	_SLDRTIKVW_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2;ENST00000510181.5_1_3:139093277-139108392:-|nuORF	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	A375_MHC_IP_R1	1	559.1949462890625	2	559.321848	1116.62914	-0.4783	-0.00026752	0.48743	0.00027263	0.009136	5.11E-06	559.321999277908	57.41	0.3055	57.41	57.263	57.568	0					7	5	2	0	0	0	0.2989	1	20561	20561		32.786	11.039	1	1810900			49050	8584	35667	35954	47947	47947					0.07549407259989493
SLDRTIKVW	9	Unmodified	_SLDRTIKVW_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2;ENST00000510181.5_1_3:139093277-139108392:-|nuORF	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	A375_MHC_IP_R1	1	373.6171569824219	3	373.216991	1116.62914	0.35543	0.00013265	-0.029893	-1.1157E-05	0.32553	0.0001215	373.2169615622482	57.441	0.61156	57.441	57.159	57.771	0					18	11	2	0	0	0	0.25114	1	20575	20575		34.222	8.201	1	7065300			49051	8584	35667	35954	47948	47948					0.07549407259989493
SLDSKLLFL	9	Unmodified	_SLDSKLLFL_					0	0	0			REV__ENST00000431422.1_1_6:134758921-134824003:+|nuORF	REV__ENST00000431422.1_1_6:134758921-134824003:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	518.7073364257812	2	518.307875	1034.6012	-0.76643	-0.00039725	0.067845	3.5165E-05	-0.69858	-0.00036208	518.3078611429219	132.16	0.25008	132.16	132.03	132.28	0					10	4	3	0	0	0	0.35581	1	50982	50982		26.884	0	1	6520900	+		49052	24704	35668	35955	47949	47949					0.08528084279919312
SLDSRSFPV	9	Unmodified	_SLDSRSFPV_					0	0	0		ENST00000594984.1_1_19:50385622-50386129:+|nuORF	ENST00000594984.1_1_19:50385622-50386129:+|nuORF	ENST00000594984.1_1_19:50385622-50386129:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1802062988281	2	504.261456	1006.50836	-0.93808	-0.00047304	-0.17163	-8.6545E-05	-1.1097	-0.00055958	504.2613987703176	57.955	0.40148	58.704	58.528	58.929	0.74894					13	7	2	0	0	0	0.73008	1	21984	21984		17.113	17.113	1	1451100			49053	13834	35669	35956	47950	47950					0.00536579546530902
SLDSRSFPV	9	Unmodified	_SLDSRSFPV_					0	0	0		ENST00000594984.1_1_19:50385622-50386129:+|nuORF	ENST00000594984.1_1_19:50385622-50386129:+|nuORF	ENST00000594984.1_1_19:50385622-50386129:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	504.261456	1006.50836	-0.4407	-0.00022223	-0.31291	-0.00015779	-0.75361	-0.00038002	504.26141779420936	58.811	0.5605	58.811	58.582	59.143	0	0.053476	-6.6586E-05	NaN	17.113	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1410100			49054	13834	35669	35956							0.00536579546530902
SLDSSNMGNY	10	Unmodified	_SLDSSNMGNY_					0	0	0		TTN|p.D7110N|1|0.13|ENSG00000155657|chr2:178722508-178722508|C/T|missense_variant	TTN|p.D7110N|1|0.13|ENSG00000155657|chr2:178722508-178722508|C/T|missense_variant	TTN|p.D7110N|1|0.13|ENSG00000155657|chr2:178722508-178722508|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	544.2106323242188	2	544.221671	1086.42879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.332	1	80.077	79.577	80.577	0.74474								0	0	0	0.15435	1	30105	30105		6.7232	0.96273	1				49055	30095	35670	35957	47951	47951					-0.11096855189771304
SLDSTIPGI	9	Unmodified	_SLDSTIPGI_					0	0	0		ENSG00000147649|ENST00000336273|MTDH	ENSG00000147649|ENST00000336273|MTDH	ENSG00000147649|ENST00000336273|MTDH	MULTI-SECPEP	A375_MHC_IP_R1	1	902.88232421875	1	902.482939	901.475663	-0.20649	-0.00018635	0.049874	4.5011E-05	-0.15662	-0.00014134	902.4828092355875	95.736	1.063	95.736	95.415	96.478	0					30	20	3	0	0	0	0.16229	1	35142	35142		57.471	21.427	1	10570000			49056	5697	35671	35958	47952	47952					0.020983724236884882
SLDSTIPGI	9	Unmodified	_SLDSTIPGI_					0	0	0		ENSG00000147649|ENST00000336273|MTDH	ENSG00000147649|ENST00000336273|MTDH	ENSG00000147649|ENST00000336273|MTDH	MULTI-MATCH	A375_MHC_IP_R2	2		1	902.482939	901.475663	-0.14989	-0.00013527	-0.15936	-0.00014382	-0.30925	-0.00027909	902.4826665476623	95.01	0.66077	95.76	95.432	96.093	0.75045	0.012368	-0.00011936	NaN	57.471	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13245000			49057	5697	35671	35958							0.020983724236884882
SLDSTLHAV	9	Unmodified	_SLDSTLHAV_					0	0	0		nc|ENSG00000133739|Q9C099-2|LRRCC1;ENSG00000133739|ENST00000360375|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	MULTI-SECPEP	A375_MHC_IP_R1	1	472.14825439453125	2	471.748182	941.481811	-0.36573	-0.00017253	0.41577	0.00019614	0.050042	2.3607E-05	471.748282901583	50.94	0.50481	50.94	50.663	51.168	0					21	9	3	0	0	0	0.061132	1	18069	18069		57.471	37.018	1	4767900			49058	4528	35672	35959	47953	47953					0.00872890655205083
SLDSTLHAV	9	Unmodified	_SLDSTLHAV_					0	0	0		nc|ENSG00000133739|Q9C099-2|LRRCC1;ENSG00000133739|ENST00000360375|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	MULTI-MSMS	A375_MHC_IP_R2	2	472.1481018066406	2	471.748182	941.481811	-0.79158	-0.00037343	0.57204	0.00026986	-0.21954	-0.00010357	471.74828084125943	50.159	0.56032	50.913	50.548	51.108	0.75406					16	10	2	0	0	0	0.11296	1	18843	18843		48.346	10.372	1	3354300			49059	4528	35672	35959	47954	47954					0.00872890655205083
SLDSVLADVRS	11	Unmodified	_SLDSVLADVRS_					0	0	0		ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1	ENSG00000184922|ENST00000331495|FMNL1	ENSG00000184922|ENST00000331495|FMNL1	MULTI-SECPEP	A375_MHC_IP_R1	1	580.68505859375	2	581.309135	1160.60372	-0.47148	-0.00027408	-2.3068	-0.001341	-2.7783	-0.001615	581.3083053113872	39.842	0.30431	39.842	39.643	39.948	0					8	5	2	0	0	0	0.98968	1	13608	13608		17.113	0	1	873230			49060	8619	35673	35960	47955	47955					0.029838879469025414
SLDTDPRYSEL	11	Unmodified	_SLDTDPRYSEL_					0	0	0			REV__nc|ENSG00000108100|Q8ND76-2|CCNY	REV__nc|ENSG00000108100|Q8ND76-2|CCNY	MULTI-SECPEP	A375_MHC_IP_R1	1	647.760498046875	2	648.309332	1294.60411	-0.31968	-0.00020725	0.34481	0.00022354	0.02513	1.6292E-05	648.3096485263414	74.933	0.30588	74.933	74.704	75.009	0					7	5	2	0	0	0	0.88538	1	27286	27286		18.146	9.4009	1	631230	+		49061	17515	35674	35961	47956	47956					-0.03140737123908366
SLDTGVNNYE	10	Unmodified	_SLDTGVNNYE_					0	0	0			REV__ENSG00000176809|ENST00000584306|LRRC37A3	REV__ENSG00000176809|ENST00000584306|LRRC37A3	MULTI-MSMS	A375_MHC_IP_R2	2	556.6487426757812	2	556.248743	1110.48293	-0.79972	-0.00044484	0.38667	0.00021509	-0.41305	-0.00022976	556.2486196674542	31.394	0.46037	32.113	31.872	32.332	0.71857					13	8	2	0	0	0	0.60608	1	11125	11125		20.415	1.1575	1	2967100	+		49062	21419	35675	35962	47957	47957					-0.0678893976657946
SLDVGGPLRY	10	Unmodified	_SLDVGGPLRY_					0	0	0		ENSG00000176894|ENST00000317479|PXMP2	ENSG00000176894|ENST00000317479|PXMP2	ENSG00000176894|ENST00000317479|PXMP2	MULTI-MSMS	A375_MHC_IP_R1	1	539.7085571289062	2	538.790381	1075.56621	-0.78719	-0.00042413	0.55745	0.00030035	-0.22974	-0.00012378	538.7905411501998	68.54	1.2685	68.54	68.159	69.427	0					60	24	5	0	0	0	0.44241	1	24908	24908		43.772	13.136	1	70748000			49063	8039	35676	35963	47958	47958					0.03144841471953441
SLDVGGPLRY	10	Unmodified	_SLDVGGPLRY_					0	0	0		ENSG00000176894|ENST00000317479|PXMP2	ENSG00000176894|ENST00000317479|PXMP2	ENSG00000176894|ENST00000317479|PXMP2	MULTI-MSMS	A375_MHC_IP_R2	2	539.1895751953125	2	538.790381	1075.56621	-0.79454	-0.00042809	0.27273	0.00014694	-0.52181	-0.00028115	538.7904499296076	67.799	1.4725	68.534	68.103	69.575	0.73513					67	28	4	0	0	0	0.65106	1	25871	25871		24.991	7.8781	1	65294000			49064	8039	35676	35963	47959	47959					0.03144841471953441
SLDVLIRKEL	10	Unmodified	_SLDVLIRKEL_					0	0	0			REV__KATNAL2|p.P423S|1|0.23|ENSG00000167216|chr18:47099298-47099298|C/T|missense_variant	REV__KATNAL2|p.P423S|1|0.23|ENSG00000167216|chr18:47099298-47099298|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	395.2921142578125	3	395.911568	1184.71287	-0.26391	-0.00010448	1.4018	0.000555	1.1379	0.00045052	396.2465011598862	44.825	0.35973	45.594	45.441	45.8	0.7691					9	6	2	0	0	0	0.90853	1	16818	16818		6.1918	2.0752	1	950210	+		49065	26817	35677	35964	47960	47960					0.12790518637052628
SLDVLIRKEL	10	Unmodified	_SLDVLIRKEL_					0	0	0			REV__KATNAL2|p.P423S|1|0.23|ENSG00000167216|chr18:47099298-47099298|C/T|missense_variant	REV__KATNAL2|p.P423S|1|0.23|ENSG00000167216|chr18:47099298-47099298|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	395.911568	1184.71287	0.044782	1.773E-05	1.1803	0.00046728	1.2251	0.00048501	395.9119332162706	45.966	0.40601	45.966	45.789	46.195	0	0.18577	-6.9368E-05	NaN	8.4443	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1280800	+		49066	26817	35677	35964							0.12790518637052628
SLDVRFPL	8	Unmodified	_SLDVRFPL_					0	0	0			REV__ENST00000486387.2_9:42689759-42714533:+|nuORF	REV__ENST00000486387.2_9:42689759-42714533:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	474.3014831542969	2	473.77146	945.528367	-0.78554	-0.00037217	0.081713	3.8713E-05	-0.70383	-0.00033345	473.7712128056931	49.965	0.40742	50.719	50.497	50.904	0.75406					17	7	3	0	0	0	0.92636	1	18852	18852		11.64	0	1	1545300	+		49067	25072	35678	35965	47961	47961					0.053423752771550426
SLDWMNGHY	9	Unmodified	_SLDWMNGHY_					0	0	0			REV__nc|ENSG00000103249|P51798-2|CLCN7	REV__nc|ENSG00000103249|P51798-2|CLCN7	MULTI-SECPEP	A375_MHC_IP_R1	1	561.2576904296875	2	561.737291	1121.46003	-0.66517	-0.00037365	1.4522	0.00081577	0.78707	0.00044212	561.7378191162476	86.371	1.0129	86.371	85.667	86.679	0					23	19	2	0	0	0	0.76187	1	31610	31610		7.2892	0	1	2936600	+		49068	17263	35679	35966	47962	47962					-0.09584237365015724
SLDYNFQNN	9	Unmodified	_SLDYNFQNN_					0	0	0		SYT1|p.D153N|1|0.4|ENSG00000067715|chr12:79292113-79292113|G/A|missense_variant	SYT1|p.D153N|1|0.4|ENSG00000067715|chr12:79292113-79292113|G/A|missense_variant	SYT1|p.D153N|1|0.4|ENSG00000067715|chr12:79292113-79292113|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	558.1438598632812	2	557.743628	1113.4727	-1.2927	-0.00072099	0.44269	0.00024691	-0.84999	-0.00047408	557.7439629734525	28.532	0.50355	29.219	29.019	29.522	0.68742					13	9	2	0	0	0	0.63811	1	9869	9869		12.532	0	1	11370000			49069	29282	35680	35967	47963	47963					-0.07949502701148958
SLEARLESV	9	Unmodified	_SLEARLESV_					0	0	0			REV__nc|ENSG00000105357|Q7Z406-4|MYH14	REV__nc|ENSG00000105357|Q7Z406-4|MYH14	MULTI-MSMS	A375_MHC_IP_R2	2	502.67449951171875	2	502.274564	1002.53457	-0.59929	-0.00030101	0.3117	0.00015656	-0.28759	-0.00014445	502.2746502558244	64.682	0.6628	65.422	65.054	65.717	0.74022					20	12	2	0	0	0	0.094655	1	24515	24515		51.63	4.0354	1	5895900	+		49070	17374	35681	35968	47964	47964					0.03340848718016787
SLEATSDEKY	10	Unmodified	_SLEATSDEKY_					0	0	0		ANKRD36|p.D935Y|1|0.44|ENSG00000135976|chr2:97200471-97200471|G/T|missense_variant	ANKRD36|p.D935Y|1|0.44|ENSG00000135976|chr2:97200471-97200471|G/T|missense_variant	ANKRD36|p.D935Y|1|0.44|ENSG00000135976|chr2:97200471-97200471|G/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	571.16943359375	2	571.764226	1141.5139	-0.73317	-0.0004192	-0.10832	-6.1932E-05	-0.84149	-0.00048113	571.763967134518	29.277	0.45668	29.277	29.047	29.504	0					19	8	3	0	0	0	0.60556	1	9122	9122		20.454	0	1	11056000			49071	145	35682	35969	47965	47965					-0.05119786452314656
SLECRLHVE	9	Unmodified	_SLECRLHVE_					0	0	0			REV__ENST00000483602.1_1_2:241534571-241535939:+|nuORF	REV__ENST00000483602.1_1_2:241534571-241535939:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	543.673583984375	2	543.274041	1084.53353	-1.0793	-0.00058638	0.16183	8.792E-05	-0.91751	-0.00049846	543.2743309955591	38.053	1.0753	38.827	38.175	39.25	0.77451					43	20	4	0	0	0	0.41879	1	13960	13960		23.79	1.0535	1	8315200	+		49072	19305	35683	35970	47966	47966					-0.005356889225595296
SLEDKSPEY	9	Unmodified	_SLEDKSPEY_					0	0	0		TSPAN2|p.S47L|1|0.12|ENSG00000134198|chr1:115072937-115072937|G/A|missense_variant	TSPAN2|p.S47L|1|0.12|ENSG00000134198|chr1:115072937-115072937|G/A|missense_variant	TSPAN2|p.S47L|1|0.12|ENSG00000134198|chr1:115072937-115072937|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	533.7789306640625	2	534.248212	1066.48187	-0.62108	-0.00033181	-2.8893	-0.0015436	-3.5104	-0.0018754	534.2464011922655	86.241	0.66431	86.974	86.693	87.357	0.733					22	12	2	0	0	0	0.76827	1	32909	32909		6.7232	3.4419	1	1515800			49073	30086	35684	35971	47967	47967					-0.048711541354578
SLEDSLVSFH	10	Unmodified	_SLEDSLVSFH_					0	0	0		ENST00000375571.5_1_20:31436579-31436699:+|nuORF	ENST00000375571.5_1_20:31436579-31436699:+|nuORF	ENST00000375571.5_1_20:31436579-31436699:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	378.9294128417969	3	378.520628	1132.54005	0.08949	3.3874E-05	-0.13005	-4.9226E-05	-0.040558	-1.5352E-05	378.5205349096146	32.345	0.56063	33.082	32.806	33.367	0.73692					23	10	3	0	0	0	0.78945	1	11580	11580		5.4027	0	1	9206300			49074	11273	35685	35972	47968	47968					-0.02091472490178603
SLEEASQGTY	10	Unmodified	_SLEEASQGTY_					0	0	0			REV__ENSG00000197948|ENST00000435817|FCHSD1	REV__ENSG00000197948|ENST00000435817|FCHSD1	MULTI-MSMS	A375_MHC_IP_R1	1	542.6730346679688	2	542.743293	1083.47203	-0.81662	-0.00044321	0.68294	0.00037066	-0.13368	-7.2553E-05	542.7435441145054	38.414	0.35895	38.414	38.218	38.577	0					10	6	2	0	0	0	0.66712	1	12968	12968		15.847	0	1	1204600	+		49075	22330	35686	35973	47969	47969					-0.06636342140814122
SLEECCLNEE	10	Unmodified	_SLEECCLNEE_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	A375_MHC_IP_R2	2	585.1276245117188	2	584.728471	1167.44239	-0.47622	-0.00027846	-1.2171	-0.0007117	-1.6934	-0.00099016	584.7282375501114	76.962	0.5566	77.705	77.453	78.01	0.74293					23	10	3	0	0	0	0.50967	1	29254	29254		27.629	8.3718	1	5091800	+		49076	16747	35687	35974	47970	47970					-0.1346336547287592
SLEECRGKMA	10	Unmodified	_SLEECRGKMA_					0	0	0			REV__OPTN|p.F69C|1|0.18|ENSG00000123240|chr10:13110313-13110313|T/G|missense_variant	REV__OPTN|p.F69C|1|0.18|ENSG00000123240|chr10:13110313-13110313|T/G|missense_variant	MSMS	A375_MHC_IP_R2	2	562.1868286132812	2	562.265358	1122.51616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.525	1	67.262	66.762	67.762	0.73631								0	0	0	0.14983	1	25204	25204		18.146	1.0335	1		+		49077	27644	35688	35975	47971	47971					-0.04019352519844688
SLEEEEDEQE	10	Unmodified	_SLEEEEDEQE_					0	0	0		nc|ENSG00000171680|O94827-4|PLEKHG5;ENSG00000171680|ENST00000377728|PLEKHG5;nc|ENSG00000171680|O94827-3|PLEKHG5;nc|ENSG00000171680|O94827-7|PLEKHG5	nc|ENSG00000171680|O94827-4|PLEKHG5	nc|ENSG00000171680|O94827-4|PLEKHG5	MSMS	A375_MHC_IP_R1	1	618.7305297851562	2	618.741145	1235.46774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.96	1	93.96	93.46	94.46	0								0	0	0	0.15435	1	34536	34536		6.7232	0.51738	1				49078	7627	35689	35976	47972	47972					-0.14057896145072846
SLEEEVTCSI	10	Unmodified	_SLEEEVTCSI_					0	0	0		ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	MULTI-SECPEP	A375_MHC_IP_R2	2	554.6943969726562	2	555.255179	1108.49581	-0.69778	-0.00038745	2.1569	0.0011976	1.4591	0.00081017	555.7589038482957	92.758	0.80973	93.497	93.089	93.899	0.73902					22	15	2	0	0	0	0.72086	1	35210	35210		24.021	3.5669	1	1395600			49079	9738	35690	35977	47973	47973					-0.054102446986689756
SLEEFAQAES	10	Unmodified	_SLEEFAQAES_					0	0	0		nc|ENSG00000118514|Q9H2A2-3|ALDH8A1;nc|ENSG00000118514|Q9H2A2-2|ALDH8A1;nc|ENSG00000118514|Q9H2A2-4|ALDH8A1;ENSG00000118514|ENST00000265605|ALDH8A1	nc|ENSG00000118514|Q9H2A2-3|ALDH8A1	nc|ENSG00000118514|Q9H2A2-3|ALDH8A1	MULTI-MSMS	A375_MHC_IP_R1	1	556.1815185546875	2	555.751118	1109.48768	-0.42096	-0.00023395	-0.27157	-0.00015092	-0.69253	-0.00038487	555.7511134075718	78.276	0.65865	78.276	78.048	78.707	0					16	12	2	0	0	0	0.53946	1	28636	28636		25.399	2.2509	1	1152400			49080	3548	35691	35978	47974	47974					-0.06268055623809232
SLEEFAQAES	10	Unmodified	_SLEEFAQAES_					0	0	0		nc|ENSG00000118514|Q9H2A2-3|ALDH8A1;nc|ENSG00000118514|Q9H2A2-2|ALDH8A1;nc|ENSG00000118514|Q9H2A2-4|ALDH8A1;ENSG00000118514|ENST00000265605|ALDH8A1	nc|ENSG00000118514|Q9H2A2-3|ALDH8A1	nc|ENSG00000118514|Q9H2A2-3|ALDH8A1	MULTI-MATCH	A375_MHC_IP_R2	2		2	555.751118	1109.48768	-0.7842	-0.00043582	0.10091	5.6084E-05	-0.68329	-0.00037974	555.7514651630033	77.678	0.45795	78.421	78.062	78.52	0.74293	0.072684	0.00020369	NaN	25.399	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	613820			49081	3548	35691	35978							-0.06268055623809232
SLEEIECWSE	10	Unmodified	_SLEEIECWSE_					0	0	0			REV__nc|ENSG00000189164|Q8NB42-2|ZNF527	REV__nc|ENSG00000189164|Q8NB42-2|ZNF527	MSMS	A375_MHC_IP_R2	2	612.7353515625	2	612.758086	1223.50162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.928	1	57.678	57.178	58.178	0.75015								0	0	0	0.15158	1	21522	21522		14.838	1.7958	1		+		49082	22141	35692	35979	47975	47975					-0.10119146187025763
SLEEQKKLEGE	11	Unmodified	_SLEEQKKLEGE_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-SECPEP	A375_MHC_IP_R2	2	644.6723022460938	2	645.332807	1288.65106	-0.97112	-0.00062669	0.048228	3.1123E-05	-0.92289	-0.00059557	645.3328922044745	28.232	0.30344	28.911	28.757	29.06	0.67857					12	5	3	0	0	0	0.99424	1	9663	9663		0.20686	0.20686	1	3992200			49083	1538	35693	35980	47976	47976					0.018281224272413965
SLEESIRQV	9	Unmodified	_SLEESIRQV_					0	0	0		ENSG00000151461|ENST00000357604|UPF2	ENSG00000151461|ENST00000357604|UPF2	ENSG00000151461|ENST00000357604|UPF2	MULTI-SECPEP	A375_MHC_IP_R1	1	531.2125854492188	2	530.785296	1059.55604	-0.37679	-0.00019999	-0.82014	-0.00043532	-1.1969	-0.00063531	530.7848896319562	47.954	0.5549	47.954	47.567	48.122	0					14	10	2	0	0	0	0.63327	1	16852	16852		18.146	11.941	1	1740900			49084	5907	35694	35981	47977	47977					0.028642337467317702
SLEESIRQV	9	Unmodified	_SLEESIRQV_					0	0	0		ENSG00000151461|ENST00000357604|UPF2	ENSG00000151461|ENST00000357604|UPF2	ENSG00000151461|ENST00000357604|UPF2	MULTI-SECPEP	A375_MHC_IP_R2	2	530.71875	2	530.785296	1059.55604	-0.44509	-0.00023625	0.16981	9.0133E-05	-0.27527	-0.00014611	531.2868627988762	47.235	0.35715	47.996	47.766	48.123	0.76128					9	6	2	0	0	0	0.33896	1	17712	17712		47.594	21.326	1	2712100			49085	5907	35694	35981	47978	47978					0.028642337467317702
SLEEVELLY	9	Unmodified	_SLEEVELLY_					0	0	0		ENSG00000189320|ENST00000338588|FAM180A	ENSG00000189320|ENST00000338588|FAM180A	ENSG00000189320|ENST00000338588|FAM180A	MULTI-MSMS	A375_MHC_IP_R2	2	547.7101440429688	2	547.78443	1093.55431	-0.78899	-0.0004322	0.49515	0.00027124	-0.29384	-0.00016096	547.7846430563526	77.823	0.25925	78.566	78.416	78.676	0.74293					6	4	2	0	0	0	0.1978	1	29565	29565		38.151	0	1	1164100			49086	8978	35695	35982	47979	47979					0.011271799381120218
SLEEVNQLW	9	Unmodified	_SLEEVNQLW_					0	0	0		ENSG00000132781|ENST00000456914|MUTYH;nc|ENSG00000132781|Q9UIF7-5|MUTYH;nc|ENSG00000132781|Q9UIF7-4|MUTYH;nc|ENSG00000132781|Q9UIF7-3|MUTYH;nc|ENSG00000132781|Q9UIF7-2|MUTYH;nc|ENSG00000132781|Q9UIF7|MUTYH	ENSG00000132781|ENST00000456914|MUTYH	ENSG00000132781|ENST00000456914|MUTYH	MULTI-MSMS	A375_MHC_IP_R2	2	558.6716918945312	2	559.279846	1116.54514	-0.99244	-0.00055505	-0.26512	-0.00014827	-1.2576	-0.00070333	559.2795354996806	60.317	1.2176	61.062	60.601	61.819	0.74503					38	18	3	0	0	0	0.44024	1	22912	22912		22.736	3.4793	1	7767000			49087	4448	35696	35983	47980	47980					-0.00847168627569772
SLEFRTLY	8	Unmodified	_SLEFRTLY_					0	0	0		FAM83E|p.S288F|1|0.28|ENSG00000105523|chr19:48603807-48603807|G/A|missense_variant;ENSG00000105523|ENST00000263266|FAM83E	FAM83E|p.S288F|1|0.28|ENSG00000105523|chr19:48603807-48603807|G/A|missense_variant	FAM83E|p.S288F|1|0.28|ENSG00000105523|chr19:48603807-48603807|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	514.6707153320312	2	514.7742	1027.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.232	1	62.232	61.732	62.732	0								0	0	0	0.16876	1	22469	22469		19.439	0.18201	1				49088	2616	35697	35984	47981	47981					0.021180540689556437
SLEGLGSVL	9	Unmodified	_SLEGLGSVL_					0	0	0		ENST00000497918.5_1_2:220029863-220033027:-|nuORF;nc|ENSG00000213901|Q6PIS1-5|SLC23A3;ENSG00000213901|ENST00000409878|SLC23A3	ENST00000497918.5_1_2:220029863-220033027:-|nuORF;nc|ENSG00000213901|Q6PIS1-5|SLC23A3	nc|ENSG00000213901|Q6PIS1-5|SLC23A3	MULTI-SECPEP	A375_MHC_IP_R2	2	437.64208984375	2	437.74765	873.480748	-0.42591	-0.00018644	-0.39471	-0.00017278	-0.82062	-0.00035922	437.7473975525735	36.104	0.46081	36.875	36.595	37.056	0.7709					12	8	2	0	0	0	0.39388	1	13144	13144		25.399	0	1	2384700			49089	12751;9586	35698	35985	47982	47982					0.03894676286302001
SLEGLKMRPSL	11	Unmodified	_SLEGLKMRPSL_					0	0	0		ENST00000545213.5_1_14:24798022-24799232:-|nuORF;ENST00000557056.5_1_14:24792528-24800258:-|nuORF;nc|ENSG00000129467|Q8NFM4-2|ADCY4;ENST00000554577.5_1_14:24791640-24799178:-|nuORF;ENSG00000129467|ENST00000418030|ADCY4	ENST00000545213.5_1_14:24798022-24799232:-|nuORF	ENST00000545213.5_1_14:24798022-24799232:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	615.239990234375	2	615.847373	1229.68019	-0.24316	-0.00014975	0.55025	0.00033887	0.30709	0.00018912	615.8475332209835	105.32	1.2169	105.32	104.79	106.01	0					57	23	3	0	0	0	0.9836	1	38702	38702		4.5289	1.7937	1	7762800			49090	4191	35699	35986	47983	47983					0.0745398824253698
SLEGTFPHLAF	11	Unmodified	_SLEGTFPHLAF_					0	0	0			REV__nc|ENSG00000150275|Q96QU1-4|PCDH15	REV__nc|ENSG00000150275|Q96QU1-4|PCDH15	MULTI-SECPEP	A375_MHC_IP_R1	1	407.2765808105469	3	406.876634	1217.60807	-0.51293	-0.0002087	0.80243	0.00032649	0.2895	0.00011779	406.8769454985112	38.34	0.51083	38.34	38.168	38.679	0					21	9	3	0	0	0	0.99109	1	13013	13013		0.45452	0.31463	1	4997100	+		49091	27284	35700	35987	47984	47984					0.007973971604542385
SLEHFARAPGE	11	Unmodified	_SLEHFARAPGE_					0	0	0			REV__ENSG00000177084|ENST00000320574|POLE	REV__ENSG00000177084|ENST00000320574|POLE	MULTI-SECPEP	A375_MHC_IP_R1	1	606.9799194335938	2	607.301644	1212.58874	-0.17289	-0.000105	-1.8929	-0.0011495	-2.0658	-0.0012545	607.3006171034109	22.949	0.30116	22.949	22.773	23.074	0					6	5	2	0	0	0	0.94168	1	6221	6221		10.8	0	1	1195500	+		49092	21436	35701	35988	47985	47985					-0.009055591304331756
SLEHLHSFIL	10	Unmodified	_SLEHLHSFIL_					0	0	0			REV__nc|ENSG00000115657|Q9NP58-4|ABCB6	REV__nc|ENSG00000115657|Q9NP58-4|ABCB6	MULTI-SECPEP	A375_MHC_IP_R2	2	399.15545654296875	3	399.220513	1194.63971	-0.38475	-0.0001536	0.054003	2.1559E-05	-0.33075	-0.00013204	399.5549445422829	61.602	0.4526	62.347	62.121	62.573	0.74503					11	8	2	0	0	0	0.9269	1	23324	23324		6.1918	2.6048	1	905520	+		49093	17904	35702	35989	47986	47986					0.050173899144283496
SLEHMASMQY	10	Unmodified	_SLEHMASMQY_					0	0	0		ENSG00000102053|ENST00000338957|ZC3H12B;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B	ENSG00000102053|ENST00000338957|ZC3H12B	ENSG00000102053|ENST00000338957|ZC3H12B	MULTI-MSMS	A375_MHC_IP_R1	1	599.2099609375	2	598.757366	1195.50018	-0.38456	-0.00023026	-1.0845	-0.00064936	-1.4691	-0.00087962	598.7565560466828	59.457	0.65988	59.457	59.092	59.752	0					20	12	2	0	0	0	0.70329	1	21314	21314		10.824	2.9138	1	4237700			49094	2354	35703	35990	47987	47987					-0.08975058756755061
SLEHTKQW	8	Unmodified	_SLEHTKQW_					0	0	0		ENST00000474704.1_1_17:27041945-27042505:-|nuORF;nc|ENSG00000109113|Q9BZG1-4|RAB34;nc|ENSG00000109113|Q9BZG1-2|RAB34;ENSG00000109113|ENST00000395245|RAB34	ENST00000474704.1_1_17:27041945-27042505:-|nuORF	ENST00000474704.1_1_17:27041945-27042505:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	515.1900634765625	2	514.761623	1027.50869	-0.38559	-0.00019849	-0.73444	-0.00037806	-1.12	-0.00057655	514.7613560131902	42.461	0.70843	42.461	42.183	42.891	0					17	13	2	0	0	0	0.97144	1	14867	14867		5.2307	0	1	2289400			49095	2858	35704	35991	47988	47988					-0.003960007336218041
SLEIAQISQY	10	Unmodified	_SLEIAQISQY_					0	0	0		ENSG00000121853|ENST00000241256|GHSR	ENSG00000121853|ENST00000241256|GHSR	ENSG00000121853|ENST00000241256|GHSR	MULTI-MSMS	A375_MHC_IP_R2	2	576.7007446289062	2	576.300778	1150.587	-0.59394	-0.00034229	-0.024296	-1.4002E-05	-0.61824	-0.00035629	576.3009376516067	52.407	0.45403	53.159	52.932	53.386	0.75225					14	8	2	0	0	0	0.64017	1	19777	19777		26.268	0.24744	1	5175400			49096	3740	35705	35992	47989	47989					0.017733870609617952
SLEIGSPFVV	10	Unmodified	_SLEIGSPFVV_					0	0	0		ENST00000414082.1_3_20:33292571-33293222:+|nuORF	ENST00000414082.1_3_20:33292571-33293222:+|nuORF	ENST00000414082.1_3_20:33292571-33293222:+|nuORF	MSMS	A375_MHC_IP_R2	2	524.29150390625	2	524.289682	1046.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.444	1	62.189	61.689	62.689	0.74503								0	0	0	0.048075	1	23288	23288		52.268	2.3353	1				49097	11662	35706	35993	47990	47990					0.04339207383191024
SLEINTTEP	9	Unmodified	_SLEINTTEP_					0	0	0		ENSG00000166268|ENST00000552032|MYRFL	ENSG00000166268|ENST00000552032|MYRFL	ENSG00000166268|ENST00000552032|MYRFL	MSMS	A375_MHC_IP_R2	2	502.1947021484375	2	502.250754	1002.48696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.283	1	51.037	50.537	51.537	0.75406								0	0	0	0.14767	1	18910	18910		25.399	4.9457	1				49098	7054	35707	35994	47991	47991					-0.01418850272864347
SLEKELPYY	9	Unmodified	_SLEKELPYY_					0	0	0			REV__TNN|p.G299E|1|0.18|ENSG00000120332|chr1:175080274-175080274|G/A|missense_variant	REV__TNN|p.G299E|1|0.18|ENSG00000120332|chr1:175080274-175080274|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	573.2811279296875	2	571.292422	1140.57029	-0.67326	-0.00038463	0.33529	0.00019155	-0.33798	-0.00019308	571.2923360562264	57.175	1.3747	57.925	57.306	58.681	0.75015					84	26	5	0	0	0	0.59266	1	21677	21677		21.747	5.8995	1	16221000	+		49099	28143	35708	35995	47992	47992					0.0056288617497557425
SLEKFRIKY	9	Unmodified	_SLEKFRIKY_					0	0	0		CFAP58|p.E42K|2|0.37|ENSG00000120051|chr10:104358455-104358455|G/A|missense_variant	CFAP58|p.E42K|2|0.37|ENSG00000120051|chr10:104358455-104358455|G/A|missense_variant	CFAP58|p.E42K|2|0.37|ENSG00000120051|chr10:104358455-104358455|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	395.6324462890625	3	395.232641	1182.67609	-0.51396	-0.00020313	0.12323	4.8705E-05	-0.39073	-0.00015443	395.23257910602314	37.465	0.56185	38.236	37.968	38.53	0.7709					22	10	3	0	0	0	0.29981	1	13737	13737		28.495	0	1	3318300			49100	370	35709	35996	47993	47993					0.09206266811133901
SLEKFRIKY	9	Unmodified	_SLEKFRIKY_					0	0	0		CFAP58|p.E42K|2|0.37|ENSG00000120051|chr10:104358455-104358455|G/A|missense_variant	CFAP58|p.E42K|2|0.37|ENSG00000120051|chr10:104358455-104358455|G/A|missense_variant	CFAP58|p.E42K|2|0.37|ENSG00000120051|chr10:104358455-104358455|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	395.232641	1182.67609	-0.32224	-0.00012736	0.5079	0.00020074	0.18566	7.3377E-05	395.232758058542	38.385	0.45985	38.385	38.168	38.628	0	0.074551	0.00021218	NaN	28.495	21	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2374300			49101	370	35709	35996							0.09206266811133901
SLEKIYDNI	9	Unmodified	_SLEKIYDNI_					0	0	0		tr|U7STB7|U7STB7_FUSNUDNApolymeraseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polAPE=3SV=1	tr|U7STB7|U7STB7_FUSNUDNApolymeraseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polAPE=3SV=1	tr|U7STB7|U7STB7_FUSNUDNApolymeraseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	547.6997680664062	2	547.790047	1093.56554	-0.40547	-0.00022211	-0.8151	-0.0004465	-1.2206	-0.00066861	547.7897617530183	92.205	0.25398	92.205	92.007	92.261	0					6	4	2	0	0	0	0.46465	1	33826	33826		21.537	1.0834	1	647040			49102	29677	35710	35997	47994	47994					0.022500020322468117
SLEKKGHVYL	10	Unmodified	_SLEKKGHVYL_					0	0	0		nc|ENSG00000084734|Q14397|GCKR;ENSG00000084734|ENST00000264717|GCKR	nc|ENSG00000084734|Q14397|GCKR	nc|ENSG00000084734|Q14397|GCKR	MULTI-SECPEP	A375_MHC_IP_R1	1	392.27716064453125	3	391.892396	1172.65536	0.05292	2.0739E-05	1.8299	0.00071712	1.8828	0.00073786	392.22775115847827	77.006	0.71263	77.006	76.471	77.184	0					18	13	2	0	0	0	0.93873	1	27975	27975		2.8433	0	1	1400100			49103	1804	35711	35998	47995	47995					0.07593676431474705
SLEKLFKQQ	9	Unmodified	_SLEKLFKQQ_					0	0	0			REV__MAEL|p.P261L|1|0.39|ENSG00000143194|chr1:167005334-167005334|C/T|missense_variant	REV__MAEL|p.P261L|1|0.39|ENSG00000143194|chr1:167005334-167005334|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	374.6170959472656	3	374.21688	1119.62881	0.25959	9.7143E-05	0.15937	5.9638E-05	0.41896	0.00015678	374.2168989730795	58.767	1.1702	58.767	58.328	59.498	0					65	22	5	0	0	0	0.6421	1	21288	21288		12.175	0.65687	1	39859000	+		49104	26972	35712	35999	47996	47996					0.07377987540144204
SLEKLQCLI	9	Unmodified	_SLEKLQCLI_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1626586914062	2	523.79936	1045.58417	-0.39609	-0.00020747	-2.7998	-0.0014665	-3.1959	-0.001674	523.7983524695753	62.296	0.40859	62.296	62.097	62.505	0					10	7	2	0	0	0	0.60012	1	22453	22453		18.135	7.3111	1	1180400	+		49105	19783	35713	36000	47997	47997					0.06319840402443333
SLEKRTFVVF	10	Unmodified	_SLEKRTFVVF_					0	0	0		tr|U7SYQ8|U7SYQ8_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00878PE=3SV=1	tr|U7SYQ8|U7SYQ8_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00878PE=3SV=1	tr|U7SYQ8|U7SYQ8_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00878PE=3SV=1	MSMS	A375_MHC_IP_R1	1	613.2498168945312	2	613.350606	1224.68666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.593	1	90.593	90.093	91.093	0								0	0	0	0.15332	1	33293	33293		10.074	1.3285	1				49106	29840	35714	36001	47998	47998					0.08330249465552697
SLEKVQQY	8	Unmodified	_SLEKVQQY_					0	0	0		ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-2|PREX1;ENST00000482556.5_1_20:47242425-47249020:-|nuORF	ENSG00000124126|ENST00000371941|PREX1	ENSG00000124126|ENST00000371941|PREX1	MSMS	A375_MHC_IP_R2	2	497.6839904785156	2	497.763832	993.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.883	1	50.637	50.137	51.137	0.75406								0	0	0	0.16876	1	18750	18750		21.747	1.293	1				49107	3870	35715	36002	47999	47999					0.01609463689283075
SLELCMVEYQ	10	Unmodified	_SLELCMVEYQ_					0	0	0			REV__nc|ENSG00000273540|Q96MI9|AGBL1	REV__nc|ENSG00000273540|Q96MI9|AGBL1	MULTI-MSMS	A375_MHC_IP_R1	1	607.700927734375	2	607.775225	1213.5359	-0.12343	-7.5017E-05	0.11891	7.2268E-05	-0.0045237	-2.7494E-06	607.7752902271981	21.122	0.4053	21.122	20.895	21.301	0					20	7	4	0	0	0	0.62155	1	5560	5560		19.257	2.1441	1	11444000	+		49108	22951	35716	36003	48000	48000					-0.0623302129977219
SLELEDVPQSP	11	Unmodified	_SLELEDVPQSP_					0	0	0			REV__nc|ENSG00000114529|Q5BVD1-2|TTMP	REV__nc|ENSG00000114529|Q5BVD1-2|TTMP	MULTI-SECPEP	A375_MHC_IP_R1	1	607.700927734375	2	607.300975	1212.5874	-0.098833	-6.0021E-05	-0.13897	-8.4395E-05	-0.2378	-0.00014442	607.3008329809404	21.319	0.40609	21.319	21.048	21.454	0					16	7	3	0	0	0	0.40526	1	5560	5560		45.74	5.7902	1	5924000	+		49109	17829	35717	36004	48001	48001					-0.010392380098664944
SLELPHSPL	9	Unmodified	_SLELPHSPL_					0	0	0			REV__ENSG00000132963|ENST00000380842|POMP	REV__ENSG00000132963|ENST00000380842|POMP	MULTI-SECPEP	A375_MHC_IP_R1	1	496.6948547363281	2	496.7742	991.533846	-0.49156	-0.0002442	0.59258	0.00029438	0.10102	5.0182E-05	496.7743148971165	65.335	0.30782	65.335	65.206	65.514	0					9	5	2	0	0	0	0.28475	1	23658	23658		32.305	3.2239	1	1199300	+		49110	18696	35718	36005	48002	48002					0.037740540689469526
SLELVQYNL	9	Unmodified	_SLELVQYNL_					0	0	0			REV__ENSG00000114204|ENST00000264677|SERPINI2	REV__ENSG00000114204|ENST00000264677|SERPINI2	MULTI-SECPEP	A375_MHC_IP_R2	2	539.2086181640625	2	539.792589	1077.57063	-0.83846	-0.0004526	-0.3119	-0.00016836	-1.1504	-0.00062096	539.7925860140105	76.211	0.60919	76.952	76.589	77.199	0.74052					15	10	2	0	0	0	0.47368	1	28884	28884		10.074	0	1	1591100	+		49111	17816	35719	36006	48003	48003					0.03494305894855643
SLEMRRPRW	9	Unmodified	_SLEMRRPRW_					0	0	0			REV__MYO3A|p.K821R|1|0.22|ENSG00000095777|chr10:26145491-26145491|A/G|missense_variant	REV__MYO3A|p.K821R|1|0.22|ENSG00000095777|chr10:26145491-26145491|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	615.1669921875	2	615.829849	1229.64514	-0.40153	-0.00024727	-4.0743	-0.0025091	-4.4758	-0.0027564	616.328437572633	76.324	0.40428	76.324	76.117	76.522	0					10	7	2	0	0	0	0.73363	1	27875	27875		15.847	5.0477	1	704810	+		49112	27068	35720	36007	48004	48004					0.03950790225235323
SLEMTRWI	8	Unmodified	_SLEMTRWI_					0	0	0			REV__ENSG00000141642|ENST00000269466|ELAC1	REV__ENSG00000141642|ENST00000269466|ELAC1	MULTI-SECPEP	A375_MHC_IP_R1	1	517.7050170898438	2	518.268227	1034.5219	-0.60209	-0.00031204	-0.57237	-0.00029664	-1.1745	-0.00060868	518.7691117796971	76.976	0.76419	76.976	76.572	77.336	0					40	14	4	0	0	0	0.93416	1	27990	27990		14.582	3.7578	1	9941100	+		49113	19283	35721	36008	48005	48005					0.006021140540951819
SLENAYHGET	10	Unmodified	_SLENAYHGET_					0	0	0		tr|U7STB6|U7STB6_FUSNUAdenosylmethionine-8-amino-7-oxononanoateaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioAPE=3SV=1	tr|U7STB6|U7STB6_FUSNUAdenosylmethionine-8-amino-7-oxononanoateaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioAPE=3SV=1	tr|U7STB6|U7STB6_FUSNUAdenosylmethionine-8-amino-7-oxononanoateaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	560.6771850585938	2	560.74891	1119.48327	-0.48209	-0.00027033	-0.14866	-8.3358E-05	-0.63074	-0.00035369	560.7487308863072	57.714	0.81266	57.714	57.313	58.126	0					27	15	2	0	0	0	0.70012	1	20564	20564		12.241	0	1	6178900			49114	29676	35722	36009	48006	48006					-0.07169520046704747
SLENFNRQNEL	11	Unmodified	_SLENFNRQNEL_					0	0	0			REV__ENSG00000103264|ENST00000311635|FBXO31	REV__ENSG00000103264|ENST00000311635|FBXO31	MULTI-MSMS	A375_MHC_IP_R2	2	682.7325439453125	2	682.333672	1362.65279	-0.53667	-0.00036619	0.07313	4.9899E-05	-0.46354	-0.00031629	682.3336044904063	68.27	0.76175	69.005	68.662	69.423	0.73511					46	14	4	0	0	0	0.38403	1	25833	25833		40.239	3.733	1	7334900	+		49115	17265	35723	36010	48007	48007					-0.014028237641241503
SLENQKGTVY	10	Unmodified	_SLENQKGTVY_					0	0	0			REV__nc|ENSG00000186265|Q7Z6A9-2|BTLA	REV__nc|ENSG00000186265|Q7Z6A9-2|BTLA	MULTI-SECPEP	A375_MHC_IP_R1	1	569.1298217773438	2	569.790578	1137.5666	-0.2853	-0.00016256	-2.6639	-0.0015179	-2.9492	-0.0016805	570.2912278546596	77.608	0.30603	77.608	77.436	77.742	0					7	5	2	0	0	0	0.83086	1	28347	28347		10.824	0	1	1001700	+		49116	27421	35724	36011	48008	48008					0.0033221640114788897
SLENRQTFSYF	11	Unmodified	_SLENRQTFSYF_					0	0	0		ENST00000503574.1_1_4:109542025-109542112:+|nuORF	ENST00000503574.1_1_4:109542025-109542112:+|nuORF	ENST00000503574.1_1_4:109542025-109542112:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	696.7326049804688	2	696.333141	1390.65173	-0.68713	-0.00047847	-0.21025	-0.00014641	-0.89738	-0.00062488	696.8344115375739	64.765	0.66193	65.504	65.155	65.817	0.73811					25	12	3	0	0	0	0.63737	1	24544	24544		20.415	4.2654	1	4004800			49117	12806	35725	36012	48009	48009					-0.0279703813305332
SLENSLKEV	9	Unmodified	_SLENSLKEV_					0	0	0		ENST00000447938.1_1_21:21797466-21797673:-|nuORF;ENST00000510488.1_1_3:141189685-141190057:-|nuORF	ENST00000447938.1_1_21:21797466-21797673:-|nuORF	ENST00000447938.1_1_21:21797466-21797673:-|nuORF	MSMS	A375_MHC_IP_R2	2	509.7041015625	2	509.774396	1017.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.562	1	75.299	74.799	75.799	0.73752								0	0	0	0.14767	1	28301	28301		25.399	3.8623	1				49118	12048	35726	36013	48010	48010					0.02617428998144078
SLEQFKAIY	9	Unmodified	_SLEQFKAIY_					0	0	0		ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	MULTI-SECPEP	A375_MHC_IP_R1	1	549.4266967773438	2	549.795132	1097.57571	-0.70727	-0.00038885	-2.5869	-0.0014223	-3.2942	-0.0018111	550.2954568010838	84.063	0.80877	84.063	83.685	84.494	0					22	15	2	0	0	0	0.67483	1	30709	30709		20.454	4.3045	1	2971800			49119	1369	35727	36014	48011	48011					0.030826097574845335
SLEQIFNL	8	Unmodified	_SLEQIFNL_					0	0	0		KMO|p.S481F|1|0.96|ENSG00000117009|chr1:241592134-241592134|C/T|missense_variant	KMO|p.S481F|1|0.96|ENSG00000117009|chr1:241592134-241592134|C/T|missense_variant	KMO|p.S481F|1|0.96|ENSG00000117009|chr1:241592134-241592134|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	481.6586608886719	2	482.260925	962.507297	-0.98412	-0.0004746	0.073399	3.5398E-05	-0.91072	-0.0004392	482.2611039804906	56.6	0.71411	57.35	57.101	57.815	0.75014					24	13	2	0	0	0	0.86263	1	21496	21496		20.454	0	1	3693600			49120	14231	35728	36015	48012	48012					0.02454365177618456
SLEQLTEL	8	Unmodified	_SLEQLTEL_					0	0	0		nc|ENSG00000136108|Q8WWK9-6|CKAP2;ENSG00000136108|ENST00000258607|CKAP2;nc|ENSG00000136108|Q8WWK9|CKAP2	nc|ENSG00000136108|Q8WWK9-6|CKAP2	nc|ENSG00000136108|Q8WWK9-6|CKAP2	MULTI-MSMS	A375_MHC_IP_R1	1	466.6583251953125	2	466.75039	931.486227	-0.21823	-0.00010186	-0.13613	-6.3537E-05	-0.35436	-0.0001654	466.75028788101866	101.09	0.81085	101.09	100.69	101.5	0					36	15	3	0	0	0	0.16582	1	37093	37093		78.149	0.16506	1	5796900			49121	4751	35729	36016	48013	48013					0.017743550780778605
SLEQRLKAL	9	Unmodified	_SLEQRLKAL_					0	0	0			REV__nc|ENSG00000125844|Q9P2E9-3|RRBP1	REV__nc|ENSG00000125844|Q9P2E9-3|RRBP1	MSMS	A375_MHC_IP_R1	1	353.27294921875	3	353.216991	1056.62914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.054	1	32.054	31.554	32.554	0								0	0	0	0.15438	1	10322	10322		14.405	2.8875	1		+		49122	18367	35730	36017	48014	48014					0.10309407260001535
SLEQVAKFVV	10	Unmodified	_SLEQVAKFVV_					0	0	0			REV__LRRC74A|p.G382E|1|0.44|ENSG00000100565|chr14:76860733-76860733|G/A|missense_variant	REV__LRRC74A|p.G382E|1|0.44|ENSG00000100565|chr14:76860733-76860733|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	373.9568176269531	3	373.88513	1118.63356	0.39254	0.00014676	-2.3267	-0.00086991	-1.9341	-0.00072315	373.88488282209374	64.787	0.76273	65.525	65.155	65.918	0.73812					21	14	2	0	0	0	0.94516	1	24643	24643		1.7423	1.4733	1	1041200	+		49123	26955	35731	36018	48015	48015					0.07898871682891695
SLEQVAKFVV	10	Unmodified	_SLEQVAKFVV_					0	0	0			REV__LRRC74A|p.G382E|1|0.44|ENSG00000100565|chr14:76860733-76860733|G/A|missense_variant	REV__LRRC74A|p.G382E|1|0.44|ENSG00000100565|chr14:76860733-76860733|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	373.88513	1118.63356	0.21143	7.9049E-05	-0.33208	-0.00012416	-0.12065	-4.511E-05	373.88498090774806	65.523	0.40796	65.523	65.36	65.768	0	-0.0012133	0.0003882	NaN	1.7423	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	796680	+		49124	26955	35731	36018							0.07898871682891695
SLEQVLSMM	9	Unmodified	_SLEQVLSMM_					0	0	0		ENST00000395896.8_1_15:62325720-62327215:-|nuORF	ENST00000395896.8_1_15:62325720-62327215:-|nuORF	ENST00000395896.8_1_15:62325720-62327215:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	519.0099487304688	2	519.253928	1036.4933	-0.39804	-0.00020668	-3.3036	-0.0017154	-3.7016	-0.0019221	519.7540054081215	82.04	0.30428	82.04	81.809	82.113	0					7	5	2	0	0	0	0.67483	1	29926	29926		6.2058	0	1	647940			49125	11483	35732	36019	48016	48016					-0.023483716373220886
SLERFRFL	8	Unmodified	_SLERFRFL_					0	0	0		VIPAS39|p.S177F|1|0.58|ENSG00000151445|chr14:77444316-77444316|G/A|missense_variant	VIPAS39|p.S177F|1|0.58|ENSG00000151445|chr14:77444316-77444316|G/A|missense_variant	VIPAS39|p.S177F|1|0.58|ENSG00000151445|chr14:77444316-77444316|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	356.597412109375	3	356.538064	1066.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.175	1	32.912	32.412	33.412	0.73692								0	0	0	0.16876	1	11426	11426		10.824	2.0785	1				49126	30139	35733	36020	48017	48017					0.061731554340894945
SLERIKVAF	9	Unmodified	_SLERIKVAF_					0	0	0			REV__ENST00000593422.5_1_19:49977845-49979877:+|nuORF	REV__ENST00000593422.5_1_19:49977845-49979877:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	531.1558227539062	2	531.818941	1061.62333	-0.68231	-0.00036287	0.16421	8.7328E-05	-0.51811	-0.00027554	531.8187916316054	28.82	0.20072	28.82	28.694	28.895	0					5	3	2	0	0	0	0.75466	1	8948	8948		4.3292	0	1	1075000	+		49127	16928	35734	36021	48018	48018					0.09498308748334239
SLERKSVW	8	Unmodified	_SLERKSVW_					0	0	0			REV__ENSG00000212128|ENST00000390677|TAS2R13	REV__ENSG00000212128|ENST00000390677|TAS2R13	MULTI-MSMS	A375_MHC_IP_R2	2	504.19970703125	2	502.779816	1003.54508	-1.0013	-0.00050345	-0.15563	-7.8247E-05	-1.157	-0.0005817	502.7799029912519	59.774	1.0104	60.521	59.946	60.957	0.74714					53	19	4	0	0	0	0.76654	1	22487	22487		15.847	0	1	18243000	+		49128	22605	35735	36022	48019	48019					0.04344876163088429
SLERLQEQC	9	Unmodified	_SLERLQEQC_					0	0	0			REV__KHDRBS2|p.R168C|3|0.36|ENSG00000112232|chr6:61901353-61901353|G/A|missense_variant	REV__KHDRBS2|p.R168C|3|0.36|ENSG00000112232|chr6:61901353-61901353|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	553.6671752929688	2	553.268955	1104.52336	-0.87489	-0.00048405	-1.6006	-0.00088557	-2.4755	-0.0013696	553.2674182039724	50.814	0.45387	51.568	51.311	51.765	0.75406					21	8	3	0	0	0	0.67483	1	19151	19151		20.454	3.3407	1	2390500	+		49129	26839	35736	36023	48020	48020					-0.02472296647783878
SLERLQRFA	9	Unmodified	_SLERLQRFA_					0	0	0			REV__ENSG00000171222|ENST00000305978|SCAND1	REV__ENSG00000171222|ENST00000305978|SCAND1	MULTI-SECPEP	A375_MHC_IP_R1	1	374.60552978515625	3	373.88049	1118.61964	0.74666	0.00027916	-1.1191	-0.0004184	-0.37241	-0.00013924	373.88006207293415	38.921	0.45708	38.921	38.679	39.136	0					13	8	3	0	0	0	0.71071	1	13306	13306		10.151	2.5416	1	1753500	+		49130	21053	35737	36024	48021	48021					0.06507638974471774
SLERLVAQV	9	Unmodified	_SLERLVAQV_					0	0	0			REV__ENSG00000276231|ENST00000619866|PIK3R6	REV__ENSG00000276231|ENST00000619866|PIK3R6	MULTI-SECPEP	A375_MHC_IP_R1	1	508.1664733886719	2	507.800749	1013.58694	-0.42433	-0.00021547	-0.2698	-0.000137	-0.69412	-0.00035248	507.8006354465894	57.949	1.9805	57.949	57.518	59.498	0					83	36	5	0	0	0	0.04395	1	20775	20775		81.89	13.809	1	104740000	+		49131	22967	35738	36025	48022	48022					0.08069431851617992
SLERLVAQV	9	Unmodified	_SLERLVAQV_					0	0	0			REV__ENSG00000276231|ENST00000619866|PIK3R6	REV__ENSG00000276231|ENST00000619866|PIK3R6	MULTI-SECPEP	A375_MHC_IP_R2	2	508.2004089355469	2	507.800749	1013.58694	-0.6725	-0.00034149	-0.14591	-7.4095E-05	-0.81841	-0.00041559	508.30202862269493	63.887	0.96606	64.627	64.088	65.054	0.74022					58	18	4	0	0	0	0.49205	1	24228	24228		27.629	2.2295	1	23325000	+		49132	22967	35738	36025	48023	48023					0.08069431851617992
SLERLVAQV	9	Unmodified	_SLERLVAQV_					0	0	0			REV__ENSG00000276231|ENST00000619866|PIK3R6	REV__ENSG00000276231|ENST00000619866|PIK3R6	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9802551269531	2	507.800749	1013.58694	-1.1514	-0.00058469	0.044234	2.2462E-05	-1.1072	-0.00056222	507.80078416049895	56.987	1.3241	57.738	57.356	58.681	0.75015					77	24	5	0	0	0	0.04038	1	21586	21586		75.761	13.188	1	120990000	+		49133	22967	35738	36025	48024	48024					0.08069431851617992
SLERPQFF	8	Unmodified	_SLERPQFF_					0	0	0			REV__nc|ENSG00000184979|Q9UMW8-2|USP18	REV__nc|ENSG00000184979|Q9UMW8-2|USP18	MULTI-SECPEP	A375_MHC_IP_R2	2	512.6659545898438	2	512.266542	1022.51853	-0.89433	-0.00045813	0.37549	0.00019235	-0.51884	-0.00026578	512.2670599848208	41.508	0.8124	42.282	41.743	42.555	0.77451					26	15	3	0	0	0	0.93661	1	15460	15460		15.847	0	1	1819900	+		49134	21851	35739	36026	48025	48025					0.00817187271752573
SLERRPADGF	10	Unmodified	_SLERRPADGF_					0	0	0		ENST00000556667.1_1_14:37641590-37641863:+|nuORF	ENST00000556667.1_1_14:37641590-37641863:+|nuORF	ENST00000556667.1_1_14:37641590-37641863:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	383.918212890625	3	383.2	1146.57817	0.74478	0.0002854	-0.34182	-0.00013098	0.40296	0.00015442	383.19952443127386	49.362	0.25489	49.362	49.235	49.49	0					6	4	2	0	0	0	0.88918	1	17447	17447		5.0475	1.4605	1	603730			49135	13443	35740	36027	48026	48026					0.010744582151346549
SLERTALFW	9	Unmodified	_SLERTALFW_					0	0	0		ENSG00000246922|ENST00000559089|UBAP1L	ENSG00000246922|ENST00000559089|UBAP1L	ENSG00000246922|ENST00000559089|UBAP1L	MULTI-SECPEP	A375_MHC_IP_R2	2	374.6170654296875	3	374.869591	1121.58694	-0.02025	-7.5912E-06	-0.66412	-0.00024896	-0.68437	-0.00025655	374.86934906327247	52.001	0.40816	52.754	52.574	52.983	0.75225					12	7	3	0	0	0	0.74412	1	19602	19602		6.6304	5.766	1	1954600			49136	9828	35741	36028	48027	48027					0.031014318516099593
SLERVRSKI	9	Unmodified	_SLERVRSKI_					0	0	0			REV__ENST00000511359.1_1_5:23303923-23304922:-|nuORF	REV__ENST00000511359.1_1_5:23303923-23304922:-|nuORF	MSMS	A375_MHC_IP_R2	2	544.4970092773438	2	544.332747	1086.65094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.445	1	98.2	97.7	98.7	0.75586								0	0	0	0.1535	1	36985	36985		15.847	4.2069	1		+		49137	25613	35742	36029	48028	48028					0.11108212008548435
SLERVSAL	8	Unmodified	_SLERVSAL_					0	0	0		PPFIA2|p.E669Kfs*20|1|0.33|ENSG00000139220|chr12:81347760-81347760|C/-|frameshift_variant;nc|ENSG00000139220|O75334-5|PPFIA2;nc|ENSG00000139220|O75334-2|PPFIA2;nc|ENSG00000139220|O75334-4|PPFIA2;nc|ENSG00000139220|O75334-3|PPFIA2;ENSG00000139220|ENST00000549396|PPFIA2;PPFIA2|p.R196K|1|0.38|ENSG00000139220|chr12:81440030-81440030|C/T|missense_variant	PPFIA2|p.E669Kfs*20|1|0.33|ENSG00000139220|chr12:81347760-81347760|C/-|frameshift_variant	PPFIA2|p.E669Kfs*20|1|0.33|ENSG00000139220|chr12:81347760-81347760|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	438.1528015136719	2	437.753267	873.491981	-0.38491	-0.0001685	-0.76889	-0.00033659	-1.1538	-0.00050508	437.75303014658647	70.884	0.70906	71.619	71.352	72.061	0.73421					19	13	2	0	0	0	0.55372	1	26896	26896		48.346	0	1	2886800			49138	5061	35743	36030	48029	48029					0.050174983804254225
SLESEREW	8	Unmodified	_SLESEREW_					0	0	0			REV__ENST00000577174.1_1_16:10934243-10934807:-|nuORF	REV__ENST00000577174.1_1_16:10934243-10934807:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	518.6405029296875	2	518.240721	1034.46689	-0.57324	-0.00029708	0.005298	2.7456E-06	-0.56794	-0.00029433	518.2408323561626	31.311	0.5576	31.311	31.059	31.616	0					16	10	2	0	0	0	0.94479	1	10025	10025		4.756	2.0208	1	2288500	+		49139	26317	35744	36031	48030	48030					-0.04896601212817586
SLESEREW	8	Unmodified	_SLESEREW_					0	0	0			REV__ENST00000577174.1_1_16:10934243-10934807:-|nuORF	REV__ENST00000577174.1_1_16:10934243-10934807:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	518.240721	1034.46689	-0.73601	-0.00038143	-0.27897	-0.00014457	-1.015	-0.000526	518.2405391724905	30.572	0.45364	31.291	31.165	31.618	0.71857	-0.0098983	-0.00017611	NaN	4.756	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1644000	+		49140	26317	35744	36031							-0.04896601212817586
SLESKLTSV	9	Unmodified	_SLESKLTSV_					0	0	0		nc|ENSG00000205336|Q9Y653-4|ADGRG1;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;nc|ENSG00000205336|Q9Y653-5|ADGRG1;ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF	nc|ENSG00000205336|Q9Y653-4|ADGRG1	nc|ENSG00000205336|Q9Y653-4|ADGRG1	MULTI-MSMS	A375_MHC_IP_R1	1	482.67138671875	2	482.27149	962.528426	-0.32335	-0.00015594	0.19648	9.4755E-05	-0.12687	-6.1188E-05	482.27154032415916	50.895	0.65956	50.895	50.459	51.119	0					26	12	3	0	0	0	0.020087	1	18035	18035		83.429	19.468	1	4261700			49141	9509	35745	36032	48031	48031					0.045663304864774545
SLESKLTSV	9	Unmodified	_SLESKLTSV_					0	0	0		nc|ENSG00000205336|Q9Y653-4|ADGRG1;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;nc|ENSG00000205336|Q9Y653-5|ADGRG1;ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF	nc|ENSG00000205336|Q9Y653-4|ADGRG1	nc|ENSG00000205336|Q9Y653-4|ADGRG1	MULTI-MSMS	A375_MHC_IP_R2	2	482.6712341308594	2	482.27149	962.528426	-0.80985	-0.00039057	-0.22501	-0.00010852	-1.0349	-0.00049908	482.27125510924077	49.974	1.0166	50.728	50.193	51.209	0.75406					29	19	2	0	0	0	0.04699	1	18763	18763		65.474	4.1162	1	3908500			49142	9509	35745	36032	48032	48032					0.045663304864774545
SLESLQVKV	9	Unmodified	_SLESLQVKV_					0	0	0		ENST00000479431.1_1_11:131781360-132016587:+|nuORF	ENST00000479431.1_1_11:131781360-132016587:+|nuORF	ENST00000479431.1_1_11:131781360-132016587:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.1953430175781	2	501.795132	1001.57571	-0.29672	-0.00014889	0.12095	6.069E-05	-0.17577	-8.82E-05	501.79512417441265	51.128	0.61053	51.128	50.864	51.475	0					27	11	3	0	0	0	0.05217	1	18113	18113		70.332	0	1	8114000			49143	12473	35746	36033	48033	48033					0.07498609757465147
SLESQLLDP	9	Unmodified	_SLESQLLDP_					0	0	0		ENSG00000126705|ENST00000673934|AHDC1	ENSG00000126705|ENST00000673934|AHDC1	ENSG00000126705|ENST00000673934|AHDC1	MULTI-SECPEP	A375_MHC_IP_R2	2	500.4745788574219	2	501.261122	1000.50769	-0.79174	-0.00039687	-1.3707	-0.00068709	-2.1625	-0.001084	501.26029073596624	71.2	0.3047	71.934	71.806	72.111	0.73421					9	5	2	0	0	0	0.69507	1	27041	27041		13.906	2.2658	1	1260800			49144	4055	35747	36034	48034	48034					0.007457401068108993
SLESSHSSFS	10	Unmodified	_SLESSHSSFS_					0	0	0		SEC14L1|p.G693S|1|0.17|ENSG00000129657|chr17:77213952-77213952|G/A|missense_variant	SEC14L1|p.G693S|1|0.17|ENSG00000129657|chr17:77213952-77213952|G/A|missense_variant	SEC14L1|p.G693S|1|0.17|ENSG00000129657|chr17:77213952-77213952|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	534.6660766601562	2	534.235635	1066.45672	-0.85176	-0.00045504	0.78699	0.00042044	-0.064779	-3.4607E-05	534.2361602771343	66.886	0.96599	67.623	67.189	68.155	0.73631					46	18	3	0	0	0	0.70651	1	25229	25229		9.3831	0.63772	1	18185000			49145	29124	35748	36035	48035	48035					-0.07385208938035248
SLESSLFFY	9	Unmodified	_SLESSLFFY_					0	0	0			REV__ENST00000343638.9_1_17:42283916-42284555:-|nuORF	REV__ENST00000343638.9_1_17:42283916-42284555:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	547.1656494140625	2	546.76604	1091.51753	-0.25886	-0.00014154	-0.13536	-7.4009E-05	-0.39422	-0.00021555	546.7659608195095	112.11	0.45674	112.11	111.92	112.38	0					12	8	2	0	0	0	0.3054	1	41135	41135		30.225	15.387	1	1430800	+		49146	23752	35749	36036	48036	48036					-0.024570718878067055
SLESSLFFY	9	Unmodified	_SLESSLFFY_					0	0	0			REV__ENST00000343638.9_1_17:42283916-42284555:-|nuORF	REV__ENST00000343638.9_1_17:42283916-42284555:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	546.76604	1091.51753	-0.25886	-0.00014154	-0.13536	-7.4009E-05	-0.39422	-0.00021555	546.7659608195095	112.11	0.45674	112.11	111.92	112.38	0	0.053126	2.7135E-05	NaN	30.225	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1430800	+		49147	23752	35749	36036							-0.024570718878067055
SLESSLFFY	9	Unmodified	_SLESSLFFY_					0	0	0			REV__ENST00000343638.9_1_17:42283916-42284555:-|nuORF	REV__ENST00000343638.9_1_17:42283916-42284555:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	546.76604	1091.51753	-0.60878	-0.00033286	-0.24978	-0.00013657	-0.85857	-0.00046943	546.7659525328042	111.26	0.51352	112	111.75	112.26	0.73692	-0.053126	-9.7991E-05	NaN	30.225	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1293300	+		49148	23752	35749	36036							-0.024570718878067055
SLESVLREV	9	Unmodified	_SLESVLREV_					0	0	0			REV__nc|ENSG00000145216|Q6UN15-3|FIP1L1	REV__nc|ENSG00000145216|Q6UN15-3|FIP1L1	MULTI-MSMS	A375_MHC_IP_R1	1	516.6900024414062	2	516.290214	1030.56587	-0.74418	-0.00038421	-0.13445	-6.9415E-05	-0.87863	-0.00045363	516.2900480303185	85.733	0.55883	85.733	85.362	85.921	0					18	10	2	0	0	0	0.19747	1	31431	31431		38.176	1.6694	1	3841400	+		49149	19464	35750	36037	48037	48037					0.051814217520814054
SLETKYRWTEY	11	Unmodified	_SLETKYRWTEY_					0	0	0		ENSG00000213585|ENST00000265333|VDAC1;ENST00000434069.1_1_X:91238282-91238345:-|nuORF;ENST00000458323.2_1_9:97050611-97050719:-|nuORF;ENST00000466080.1_1_5:133324828-133328703:-|nuORF	ENSG00000213585|ENST00000265333|VDAC1	ENSG00000213585|ENST00000265333|VDAC1	MSMS	A375_MHC_IP_R1	1	492.47760009765625	3	492.577025	1474.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.245	1	41.245	40.745	41.745	0								0	0	0	0.16297	1	14229	14229		1.3296	0.21989	1				49150	9571	35751	36038	48038	48038					-0.00912195927458015
SLETKYRWTEY	11	Unmodified	_SLETKYRWTEY_					0	0	0		ENSG00000213585|ENST00000265333|VDAC1;ENST00000434069.1_1_X:91238282-91238345:-|nuORF;ENST00000458323.2_1_9:97050611-97050719:-|nuORF;ENST00000466080.1_1_5:133324828-133328703:-|nuORF	ENSG00000213585|ENST00000265333|VDAC1	ENSG00000213585|ENST00000265333|VDAC1	MSMS	A375_MHC_IP_R1	1	492.4773254394531	3	492.577025	1474.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.811	1	41.811	41.311	42.311	0								0	0	0	0.16297	1	14456	14456		1.3296	0	1				49151	9571	35751	36038	48039	48039					-0.00912195927458015
SLETKYRWTEY	11	Unmodified	_SLETKYRWTEY_					0	0	0		ENSG00000213585|ENST00000265333|VDAC1;ENST00000434069.1_1_X:91238282-91238345:-|nuORF;ENST00000458323.2_1_9:97050611-97050719:-|nuORF;ENST00000466080.1_1_5:133324828-133328703:-|nuORF	ENSG00000213585|ENST00000265333|VDAC1	ENSG00000213585|ENST00000265333|VDAC1	MSMS	A375_MHC_IP_R1	1	492.47735595703125	3	492.577025	1474.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.935	1	46.935	46.435	47.435	0								0	0	0	0.16297	1	16491	16491		1.3296	0	1				49152	9571	35751	36038	48040	48040					-0.00912195927458015
SLETKYRWTEY	11	Unmodified	_SLETKYRWTEY_					0	0	0		ENSG00000213585|ENST00000265333|VDAC1;ENST00000434069.1_1_X:91238282-91238345:-|nuORF;ENST00000458323.2_1_9:97050611-97050719:-|nuORF;ENST00000466080.1_1_5:133324828-133328703:-|nuORF	ENSG00000213585|ENST00000265333|VDAC1	ENSG00000213585|ENST00000265333|VDAC1	MSMS	A375_MHC_IP_R2	2	492.4774169921875	3	492.577025	1474.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.054	1	41.828	41.328	42.328	0.77451								0	0	0	0.16297	1	15222	15222		1.3296	0	1				49153	9571	35751	36038	48041	48041					-0.00912195927458015
SLETMDGVY	9	Unmodified	_SLETMDGVY_					0	0	0		ENSG00000204928|ENST00000377976|GRXCR2	ENSG00000204928|ENST00000377976|GRXCR2	ENSG00000204928|ENST00000377976|GRXCR2	MULTI-SECPEP	A375_MHC_IP_R1	1	507.9803161621094	2	507.726058	1013.43756	-0.39547	-0.00020079	-1.1953	-0.0006069	-1.5908	-0.00080769	507.7252003947144	50.716	0.30341	50.716	50.51	50.814	0					8	5	2	0	0	0	0.74651	1	17987	17987		4.756	2.1785	1	647750			49154	9486	35752	36039	48042	48042					-0.06861881553300009
SLETRTMSL	9	Unmodified	_SLETRTMSL_					0	0	0			REV__ENST00000514313.1_1_4:77053589-77055413:-|nuORF	REV__ENST00000514313.1_1_4:77053589-77055413:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	519.7203979492188	2	519.268424	1036.5223	-1.0705	-0.00055587	-1.3599	-0.00070614	-2.4304	-0.001262	519.2686012815593	59.022	0.45666	59.769	59.54	59.996	0.74714					14	8	2	0	0	0	0.46038	1	22354	22354		21.747	2.3076	1	1185300	+		49155	19117	35753	36040	48043	48043					0.005494889833016714
SLETTRKKI	9	Unmodified	_SLETTRKKI_					0	0	0		PDE6B|p.E707K|1|0.56|ENSG00000133256|chr4:664211-664211|G/A|missense_variant	PDE6B|p.E707K|1|0.56|ENSG00000133256|chr4:664211-664211|G/A|missense_variant	PDE6B|p.E707K|1|0.56|ENSG00000133256|chr4:664211-664211|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	358.9656677246094	3	359.220513	1074.63971	0.16984	6.1012E-05	0.11554	4.1504E-05	0.28538	0.00010252	359.2203577936035	28.656	0.25399	28.656	28.541	28.795	0					6	4	2	0	0	0	0.77948	1	8821	8821		3.8763	3.012	1	1184500			49156	15149	35754	36041	48044	48044					0.10537389914406958
SLEVEESLLL	10	Unmodified	_SLEVEESLLL_					0	0	0			REV__ENSG00000188827|ENST00000294008|SLX4	REV__ENSG00000188827|ENST00000294008|SLX4	MULTI-SECPEP	A375_MHC_IP_R1	1	378.6488037109375	3	377.8763	1130.60707	0.34249	0.00012942	-0.18583	-7.0219E-05	0.15666	5.9199E-05	377.87605722059646	60.337	0.50866	60.337	59.955	60.464	0					12	9	2	0	0	0	0.92603	1	21696	21696		5.7834	0.38072	1	503570	+		49157	22118	35755	36042	48045	48045					0.046991380009330896
SLEVIRKW	8	Unmodified	_SLEVIRKW_					0	0	0		nc|ENSG00000123358|P22736-2|NR4A1;ENSG00000123358|ENST00000394825|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	MULTI-SECPEP	A375_MHC_IP_R1	1	516.179931640625	2	515.805834	1029.59712	-0.39892	-0.00020577	-0.069131	-3.5658E-05	-0.46805	-0.00024143	515.8058748739329	51.492	0.30416	51.492	51.27	51.575	0					12	5	3	0	0	0	0.86263	1	18214	18214		20.454	0	1	2564800			49158	3841	35756	36043	48046	48046					0.08350039576839663
SLEVLITARSS	11	Unmodified	_SLEVLITARSS_					0	0	0			REV__nc|ENSG00000007171|P35228-2|NOS2	REV__nc|ENSG00000007171|P35228-2|NOS2	MULTI-SECPEP	A375_MHC_IP_R2	2	589.0706787109375	2	588.335153	1174.65575	-0.52794	-0.00031061	0.40918	0.00024074	-0.11876	-6.9869E-05	588.3352290583236	132.14	0.40691	132.33	132.15	132.56	0.18953					10	7	2	0	0	0	0.99738	1	51966	51966		5.2969	3.4526	1	1288700	+		49159	16150	35757	36044	48047	48047					0.07541051360658457
SLEWILNIC	9	Unmodified	_SLEWILNIC_					0	0	0		ENSG00000154262|ENST00000284425|ABCA6;nc|ENSG00000154262|Q8N139-2|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	MULTI-SECPEP	A375_MHC_IP_R1	1	545.1661987304688	2	545.78371	1089.55287	-0.75431	-0.00041169	2.0945	0.0011431	1.3401	0.00073143	545.7850097212073	24.168	0.30537	24.168	24.042	24.347	0					6	5	2	0	0	0	0.78348	1	6863	6863		4.3292	0	1	2688000			49160	6076	35758	36045	48048	48048					0.011672673683733592
SLEWILNIC	9	Unmodified	_SLEWILNIC_					0	0	0		ENSG00000154262|ENST00000284425|ABCA6;nc|ENSG00000154262|Q8N139-2|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	MULTI-MATCH	A375_MHC_IP_R2	2		2	545.78371	1089.55287	-1.0904	-0.00059514	1.4754	0.00080524	0.38495	0.0002101	545.784987403556	23.497	0.2023	24.127	24.029	24.232	0.63015	-0.020498	-0.0005578	NaN	1.8442	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1480900			49161	6076	35758	36045							0.011672673683733592
SLEWKTRNQ	9	Unmodified	_SLEWKTRNQ_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	A375_MHC_IP_R1	1	581.6620483398438	2	581.304187	1160.59382	-0.084854	-4.9326E-05	-0.041514	-2.4132E-05	-0.12637	-7.3458E-05	581.3041562988784	23.016	0.4538	23.016	22.773	23.227	0					15	8	3	0	0	0	0.69507	1	6219	6219		19.257	19.257	1	3746000			49162	5332	35759	36046	48049	48049					0.019947447322010703
SLEWQHPI	8	Unmodified	_SLEWQHPI_					0	0	0			REV__TET1|p.P379S|1|0.1|ENSG00000138336|chr10:68573473-68573473|C/T|missense_variant	REV__TET1|p.P379S|1|0.1|ENSG00000138336|chr10:68573473-68573473|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	505.7133483886719	2	505.258717	1008.50288	-0.36763	-0.00018575	-0.47601	-0.00024051	-0.84364	-0.00042626	505.2582179741022	60.334	0.55999	60.334	60.006	60.566	0					15	10	2	0	0	0	0.77603	1	21621	21621		9.3474	9.3474	1	910430	+		49163	28098	35760	36047	48050	48050					-0.0010309924527973635
SLEWQHPI	8	Unmodified	_SLEWQHPI_					0	0	0			REV__TET1|p.P379S|1|0.1|ENSG00000138336|chr10:68573473-68573473|C/T|missense_variant	REV__TET1|p.P379S|1|0.1|ENSG00000138336|chr10:68573473-68573473|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	505.258717	1008.50288	-1.1061	-0.00055889	-0.025029	-1.2646E-05	-1.1312	-0.00057153	505.25869177455274	59.409	0.3022	60.156	59.946	60.249	0.74714	-0.089406	0.00028485	NaN	9.3474	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	628620	+		49164	28098	35760	36047							-0.0010309924527973635
SLFAEHKREI	10	Unmodified	_SLFAEHKREI_					0	0	0		ENST00000477917.5_1_2:220146297-220148118:+|nuORF	ENST00000477917.5_1_2:220146297-220148118:+|nuORF	ENST00000477917.5_1_2:220146297-220148118:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	614.7865600585938	2	615.335487	1228.65642	-0.41521	-0.00025549	0.10312	6.3453E-05	-0.31209	-0.00019204	615.3349737202143	149.9	0.5174	149.92	149.49	150.01	0.018265					39	37	2	0	0	0	0.94862	1	58068	58068		1.6526	0	1	94097			49165	12449	35761	36048	48051	48051					0.05123890800382469
SLFAFFDI	8	Unmodified	_SLFAFFDI_					0	0	0		ENST00000426641.3_1_12:9795008-9795224:+|nuORF	ENST00000426641.3_1_12:9795008-9795224:+|nuORF	ENST00000426641.3_1_12:9795008-9795224:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	480.4718017578125	2	480.247286	958.48002	-0.69887	-0.00033563	-0.94215	-0.00045247	-1.641	-0.0007881	480.2467404691153	33.084	0.25525	33.836	33.686	33.942	0.75225					6	4	2	0	0	0	0.91495	1	11838	11838		18.135	0	1	1065300			49166	11812	35762	36049	48052	48052					-0.0008811836275981477
SLFAGGMLRV	10	Unmodified	_SLFAGGMLRV_					0	0	0		ENSG00000184840|ENST00000332598|TMED9;ENST00000513799.5_1_5:177019550-177022414:+|nuORF	ENSG00000184840|ENST00000332598|TMED9	ENSG00000184840|ENST00000332598|TMED9	MULTI-SECPEP	A375_MHC_IP_R1	1	526.1920166015625	2	525.791869	1049.56919	-0.48858	-0.00025689	-0.039796	-2.0924E-05	-0.52838	-0.00027782	525.7919304383654	99.671	1.2652	99.671	99.218	100.48	0					35	24	3	0	0	0	0.27978	1	36591	36591		60.074	33.19	1	8920100			49167	8612	35763	36050	48053	48053					0.04638393325103607
SLFAGGMLRV	10	Unmodified	_SLFAGGMLRV_					0	0	0		ENSG00000184840|ENST00000332598|TMED9;ENST00000513799.5_1_5:177019550-177022414:+|nuORF	ENSG00000184840|ENST00000332598|TMED9	ENSG00000184840|ENST00000332598|TMED9	MULTI-SECPEP	A375_MHC_IP_R2	2	526.191650390625	2	525.791869	1049.56919	-0.39969	-0.00021015	-0.01927	-1.0132E-05	-0.41896	-0.00022028	525.7919535320517	98.646	0.81319	99.406	98.844	99.657	0.75977					24	10	3	0	0	0	0.033119	1	37431	37431		99.755	65.653	1	10195000			49168	8612	35763	36050	48054	48054					0.04638393325103607
SLFAWETW	8	Unmodified	_SLFAWETW_					0	0	0			REV__ENST00000397195.9_1_17:2588401-2588581:+|nuORF	REV__ENST00000397195.9_1_17:2588401-2588581:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	520.1712646484375	2	520.247818	1038.48108	-0.64481	-0.00033546	0.019758	1.0279E-05	-0.62506	-0.00032518	520.2478464320168	96.579	2.2342	97.334	95.74	97.974	0.75587					61	43	2	0	0	0	0.94479	1	36654	36654		4.756	0	1	1398200	+		49169	24351	35764	36051	48055	48055					-0.03661903993861415
SLFCIRKCINP	11	Unmodified	_SLFCIRKCINP_					0	0	0			REV__ENSG00000196600|ENST00000306494|SLC22A25	REV__ENSG00000196600|ENST00000306494|SLC22A25	MSMS	A375_MHC_IP_R2	2	647.3441162109375	2	647.343943	1292.67333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.914	1	99.673	99.173	100.17	0.75977								0	0	0	0.16138	1	37521	37521		11.495	1.3441	1		+		49170	22213	35765	36052	48056	48056					0.038703520903254685
SLFDFAKSKD	10	Unmodified	_SLFDFAKSKD_					0	0	0			REV__nc|ENSG00000008294|O60271-9|SPAG9	REV__nc|ENSG00000008294|O60271-9|SPAG9	MULTI-MSMS	A375_MHC_IP_R1	1	579.6954956054688	2	579.295496	1156.57644	-0.19717	-0.00011422	-0.31864	-0.00018459	-0.51581	-0.0002988	579.2952586862411	99.161	0.50808	99.161	98.914	99.422	0					20	9	3	0	0	0	0.33265	2	36424	36392;36424		38.176	11.907	1	4462700	+		49171	16170	35766	36053	48057;48058	48058					0.004414044065015332
SLFDFAKSKD	10	Unmodified	_SLFDFAKSKD_					0	0	0			REV__nc|ENSG00000008294|O60271-9|SPAG9	REV__nc|ENSG00000008294|O60271-9|SPAG9	MULTI-MSMS	A375_MHC_IP_R2	2	579.7374267578125	2	579.295496	1156.57644	-0.24928	-0.00014441	0.23462	0.00013592	-0.014661	-8.493E-06	579.2956236448831	98.293	0.60938	99.053	98.742	99.352	0.75977					25	11	3	0	0	0	0.50967	1	37230	37230		27.629	3.6082	1	4924400	+		49172	16170	35766	36053	48059	48059					0.004414044065015332
SLFDFAKSKD	10	Unmodified	_SLFDFAKSKD_					0	0	0			REV__nc|ENSG00000008294|O60271-9|SPAG9	REV__nc|ENSG00000008294|O60271-9|SPAG9	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	579.295496	1156.57644	-0.24928	-0.00014441	0.23462	0.00013592	-0.014661	-8.493E-06	579.2956236448831	98.293	0.60938	99.053	98.742	99.352	0.75977	-0.053943	0.00024921	NaN	38.176	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4924400	+		49173	16170	35766	36053							0.004414044065015332
SLFDFCWKEF	10	Unmodified	_SLFDFCWKEF_					0	0	0			REV__tr|U7SZF2|U7SZF2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00804PE=4SV=1	REV__tr|U7SZF2|U7SZF2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00804PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	441.67626953125	3	441.202242	1320.5849	-0.00020608	-9.0921E-08	-0.74479	-0.0003286	-0.74499	-0.00032869	441.20188043931483	51.24	0.45649	51.24	51.068	51.525	0					11	8	2	0	0	0	0.94269	1	18177	18177		3.3196	1.4133	1	948570	+		49174	28644	35767	36054	48060	48060					-0.06257364948510258
SLFDFCWKEF	10	Unmodified	_SLFDFCWKEF_					0	0	0			REV__tr|U7SZF2|U7SZF2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00804PE=4SV=1	REV__tr|U7SZF2|U7SZF2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00804PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		3	441.202242	1320.5849	-0.47111	-0.00020785	-0.25159	-0.000111	-0.7227	-0.00031885	441.2021707954272	50.612	0.30379	51.366	51.159	51.462	0.75406	0.062841	0.0002395	NaN	3.3196	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	958470	+		49175	28644	35767	36054							-0.06257364948510258
SLFDLNFQA	9	Unmodified	_SLFDLNFQA_					0	0	0		nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-3|NQO1	nc|ENSG00000181019|P15559-2|NQO1	nc|ENSG00000181019|P15559-2|NQO1	MULTI-MSMS	A375_MHC_IP_R1	1	528.1637573242188	2	527.763832	1053.51311	-0.73165	-0.00038614	-0.054102	-2.8553E-05	-0.78576	-0.00041469	527.7637369124461	130.08	0.50885	130.08	129.95	130.46	0					24	9	3	0	0	0	0.0096	1	50045	50045		174.73	110.49	1	145950000			49176	8329	35768	36055	48061	48061					-0.011505363107289668
SLFDLNFQA	9	Unmodified	_SLFDLNFQA_					0	0	0		nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-3|NQO1	nc|ENSG00000181019|P15559-2|NQO1	nc|ENSG00000181019|P15559-2|NQO1	MULTI-MSMS	A375_MHC_IP_R2	2	528.1636352539062	2	527.763832	1053.51311	-0.52699	-0.00027813	-0.42504	-0.00022432	-0.95203	-0.00050245	527.76355994705	129.91	0.55702	130.12	129.94	130.5	0.2142					27	10	4	0	0	0	0.0055718	1	51062	51062		189.78	125.54	1	149860000			49177	8329	35768	36055	48062	48062					-0.011505363107289668
SLFDNKDTEF	10	Unmodified	_SLFDNKDTEF_					0	0	0			REV__tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	REV__tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	608.681884765625	2	608.280043	1214.54553	-0.4926	-0.00029964	1.6666	0.0010138	1.174	0.00071414	608.2825580797302	107.03	2.2414	107.79	106.67	108.92	0.75436					86	43	3	0	0	0	0.71245	1	40514	40514		6.7232	0	1	2555900	+		49178	28773	35769	36056	48063	48063					-0.05315793698378002
SLFEEAQKV	9	Unmodified	_SLFEEAQKV_					0	0	0		nc|ENSG00000173960|P68543-2|UBXN2A;UBXN2A|p.S49F|1|0.36|ENSG00000173960|chr2:23971380-23971380|C/T|missense_variant;ENSG00000173960|ENST00000309033|UBXN2A	nc|ENSG00000173960|P68543-2|UBXN2A	nc|ENSG00000173960|P68543-2|UBXN2A	MULTI-MSMS	A375_MHC_IP_R1	1	526.1766357421875	2	525.776939	1049.53933	-0.44751	-0.00023529	-0.56176	-0.00029536	-1.0093	-0.00053065	525.7766391174104	59.704	0.50766	59.704	59.448	59.955	0					11	6	2	0	0	0	0.054426	1	21504	21504		62.573	24.397	1	1952200			49179	14773	35770	36057	48064	48064					0.016537328607682866
SLFEEEIMSY	10	Unmodified	_SLFEEEIMSY_					0	0	0		ENSG00000138411|ENST00000644978|HECW2;nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1	ENSG00000138411|ENST00000644978|HECW2	ENSG00000138411|ENST00000644978|HECW2	MSMS	A375_MHC_IP_R1	1	624.7442016601562	2	624.278654	1246.54276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.117	1	98.117	97.617	98.617	0								0	0	0	0.15435	1	36048	36048		6.7232	0.99131	1				49180	4991	35771	36058	48065	48065					-0.07065385147529923
SLFEEFAL	8	Unmodified	_SLFEEFAL_					0	0	0			REV__SIPA1L3|p.P648L|1|0.25|ENSG00000105738|chr19:38101140-38101140|C/T|missense_variant	REV__SIPA1L3|p.P648L|1|0.25|ENSG00000105738|chr19:38101140-38101140|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	478.6416931152344	2	478.242201	954.469849	-0.5297	-0.00025333	-0.23203	-0.00011097	-0.76173	-0.00036429	478.2420184188103	103.14	0.61152	103.9	103.53	104.14	0.76428					18	11	2	0	0	0	0.77515	1	39092	39092		12.532	0	1	2243800	+		49181	27966	35772	36059	48066	48066					-0.009207260880089052
SLFEEFAL	8	Unmodified	_SLFEEFAL_					0	0	0			REV__SIPA1L3|p.P648L|1|0.25|ENSG00000105738|chr19:38101140-38101140|C/T|missense_variant	REV__SIPA1L3|p.P648L|1|0.25|ENSG00000105738|chr19:38101140-38101140|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	478.242201	954.469849	-0.44651	-0.00021354	0.24802	0.00011861	-0.19849	-9.4925E-05	478.2423149495975	103.99	0.61165	103.99	103.68	104.29	0	0.045617	0.00031847	NaN	12.532	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3303600	+		49182	27966	35772	36059							-0.009207260880089052
SLFEEFAL	8	Unmodified	_SLFEEFAL_					0	0	0			REV__SIPA1L3|p.P648L|1|0.25|ENSG00000105738|chr19:38101140-38101140|C/T|missense_variant	REV__SIPA1L3|p.P648L|1|0.25|ENSG00000105738|chr19:38101140-38101140|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	478.242201	954.469849	-0.5297	-0.00025333	-0.23203	-0.00011097	-0.76173	-0.00036429	478.2420184188103	103.14	0.61152	103.9	103.53	104.14	0.76428	-0.045617	-0.00014069	NaN	12.532	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2243800	+		49183	27966	35772	36059							-0.009207260880089052
SLFEEMLQV	9	Unmodified	_SLFEEMLQV_					0	0	0		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-MSMS	A375_MHC_IP_R1	1	548.672607421875	2	548.273175	1094.5318	-0.77001	-0.00042218	-0.049854	-2.7333E-05	-0.81987	-0.00044951	548.2731152050965	131.4	0.30186	131.4	131.28	131.58	0					11	5	3	0	0	0	0.0093345	1	50680	50680		104.8	47.328	1	23548000			49184	2227	35773	36060	48067	48067					-0.011687427311699139
SLFEEMLQV	9	Unmodified	_SLFEEMLQV_					0	0	0		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-MSMS	A375_MHC_IP_R2	2	548.673095703125	2	548.273175	1094.5318	-0.77554	-0.00042521	0.25769	0.00014128	-0.51785	-0.00028392	548.2732861917528	131.18	0.2536	131.36	131.24	131.49	0.18953					13	4	4	0	0	0	0.0093345	1	51620	51620		104.8	58.778	1	18256000			49185	2227	35773	36060	48068	48068					-0.011687427311699139
SLFEEMLQV	9	Oxidation (M)	_SLFEEM(Oxidation (M))LQV_		SLFEEM(1)LQV		SLFEEM(44)LQV	0	0	1		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-SECPEP	A375_MHC_IP_R1	1	556.6709594726562	2	556.270632	1110.52671	-0.33344	-0.00018548	0.32382	0.00018013	-0.0096247	-5.354E-06	556.2705243197018	109.41	0.76414	109.41	108.97	109.73	0					34	14	4	0	0	0	0.24548	1	40098	40098		43.858	7.8141	1	3413500			49186	2227	35773	36061	48069	48069		88			-0.024130465938014822
SLFEEMLQV	9	Oxidation (M)	_SLFEEM(Oxidation (M))LQV_		SLFEEM(1)LQV		SLFEEM(52)LQV	0	0	1		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-SECPEP	A375_MHC_IP_R2	2	556.6703491210938	2	556.270632	1110.52671	-0.73343	-0.00040799	0.15457	8.598E-05	-0.57887	-0.00032201	556.2706445421792	108.65	0.71429	109.4	109.06	109.78	0.74683					22	13	2	0	0	0	0.096726	1	40990	40990		52.268	22.044	1	2608600			49187	2227	35773	36061	48070	48070		88			-0.024130465938014822
SLFEEYEMKI	10	Unmodified	_SLFEEYEMKI_					0	0	0			REV__nc|ENSG00000166323|Q8NCR3-2|MFI	REV__nc|ENSG00000166323|Q8NCR3-2|MFI	MULTI-MSMS	A375_MHC_IP_R1	1	644.707763671875	2	644.810122	1287.60569	-0.32667	-0.00021064	0.055208	3.5599E-05	-0.27146	-0.00017504	644.8103869263451	56.505	0.66097	56.505	56.244	56.905	0					24	12	3	0	0	0	0.60556	1	20217	20217		20.454	2.3073	1	7440400	+		49188	27335	35774	36062	48071	48071					-0.026608193595166085
SLFEKGLKNV	10	Unmodified	_SLFEKGLKNV_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-SECPEP	A375_MHC_IP_R1	1	568.2294921875	2	567.829506	1133.64446	0.06538	3.7125E-05	-0.44529	-0.00025285	-0.37991	-0.00021573	567.8292324253022	48.603	0.60749	48.603	48.325	48.933	0					24	11	3	0	0	0	0.023081	1	17140	17140		139.38	81.656	1	6354000			49189	3553	35775	36063	48072	48072					0.08298274057187882
SLFEKGLKNV	10	Unmodified	_SLFEKGLKNV_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-MSMS	A375_MHC_IP_R2	2	568.22900390625	2	567.829506	1133.64446	-0.22608	-0.00012838	-0.49457	-0.00028083	-0.72065	-0.00040921	567.8290887291269	47.693	0.50812	48.454	48.123	48.632	0.76128					15	9	2	0	0	0	0.011298	1	17876	17876		139.38	72.921	1	8118200			49190	3553	35775	36063	48073	48073					0.08298274057187882
SLFEKGLKNV	10	Unmodified	_SLFEKGLKNV_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-MSMS	A375_MHC_IP_R2	2	379.2885437011719	3	378.888763	1133.64446	0.23283	8.8216E-05	-0.068377	-2.5907E-05	0.16445	6.2308E-05	378.8885314476293	47.667	0.50833	48.428	48.174	48.682	0.76128					18	9	3	0	0	0	0.23154	1	17888	17888		46.022	13.125	1	3612200			49191	3553	35775	36063	48074	48074					0.08298274057187882
SLFEKKQYWVI	11	Unmodified	_SLFEKKQYWVI_					0	0	0			REV__ENSG00000006576|ENST00000416283|PHTF2	REV__ENSG00000006576|ENST00000416283|PHTF2	MSMS	A375_MHC_IP_R1	1	720.6260375976562	2	720.89792	1439.78129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.14	1	122.14	121.64	122.64	0								0	0	0	0.16138	1	45424	45424		11.495	3.8858	1		+		49192	16138	35776	36064	48075	48075					0.07898763216894622
SLFERLVKV	9	Unmodified	_SLFERLVKV_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	A375_MHC_IP_R1	1	364.62530517578125	3	364.225486	1089.65463	0.037191	1.3546E-05	0.16286	5.9317E-05	0.20005	7.2863E-05	364.2254122639786	80.573	0.81154	80.573	80.289	81.1	0					28	15	3	0	0	0	0.1915	1	29392	29392		38.615	18.034	1	9782000			49193	3882	35777	36065	48076	48076					0.11338881782398857
SLFERLVKV	9	Unmodified	_SLFERLVKV_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	A375_MHC_IP_R1	1	546.234130859375	2	545.834591	1089.65463	-0.70117	-0.00038272	0.076503	4.1758E-05	-0.62466	-0.00034096	545.8345805953348	80.605	0.91302	80.605	80.238	81.151	0					43	17	5	0	0	0	0.23313	1	29375	29375		49.527	29.074	1	19875000			49194	3882	35777	36065	48077	48077					0.11338881782398857
SLFERLVKV	9	Unmodified	_SLFERLVKV_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	A375_MHC_IP_R2	2	364.6255798339844	3	364.225486	1089.65463	0.079128	2.882E-05	0.084221	3.0675E-05	0.16335	5.9496E-05	364.225382258922	79.43	0.66111	80.174	79.946	80.607	0.74474					31	12	4	0	0	0	0.1915	1	30143	30143		38.615	12.594	1	11269000			49195	3882	35777	36065	48078	48078					0.11338881782398857
SLFERLVKV	9	Unmodified	_SLFERLVKV_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	A375_MHC_IP_R2	2	546.9057006835938	2	545.834591	1089.65463	-0.69665	-0.00038026	0.10807	5.8987E-05	-0.58858	-0.00032127	545.8345238902266	79.429	0.76079	80.174	79.846	80.607	0.74474					40	14	4	0	0	0	0.56584	1	30193	30193		17.113	10.907	1	20015000			49196	3882	35777	36065	48079	48079					0.11338881782398857
SLFERLVVL	9	Unmodified	_SLFERLVVL_					0	0	0		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MULTI-MSMS	A375_MHC_IP_R1	1	538.7283935546875	2	538.329142	1074.64373	-1.3145	-0.00070763	0.89684	0.0004828	-0.41766	-0.00022484	538.3295497724463	123.54	0.40309	123.54	123.28	123.69	0					14	7	3	0	0	0	0.020087	1	46171	46171		83.429	19.468	1	19990000			49197	878	35778	36066	48080	48080					0.10939479408125408
SLFFCIPVMGL	11	Unmodified	_SLFFCIPVMGL_					0	0	0		nc|ENSG00000165240|Q04656-5|ATP7A;ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A;nc|ENSG00000165240|Q04656-3|ATP7A	nc|ENSG00000165240|Q04656-5|ATP7A	nc|ENSG00000165240|Q04656-5|ATP7A	MULTI-SECPEP	A375_MHC_IP_R2	2	408.9543762207031	3	409.548584	1225.62392	0.073764	3.021E-05	2.2303	0.00091342	2.3041	0.00094363	409.54938546464786	42.231	0.51025	43.004	42.809	43.319	0.7724					14	9	3	0	0	0	0.98591	1	15729	15729		4.7159	0.30977	1	1099800			49198	6930	35779	36067	48081	48081					0.020136440815122114
SLFFGNLYI	9	Unmodified	_SLFFGNLYI_					0	0	0		ENSG00000092931|ENST00000685175|MFSD11	ENSG00000092931|ENST00000685175|MFSD11	ENSG00000092931|ENST00000685175|MFSD11	MULTI-SECPEP	A375_MHC_IP_R2	2	537.0601806640625	2	537.286943	1072.55933	-0.78597	-0.00042229	-0.45822	-0.00024619	-1.2442	-0.00066848	537.2866133795726	133.79	0.25513	133.95	133.85	134.11	0.16487					6	4	2	0	0	0	0.39388	1	52651	52651		32.305	9.1571	1	1763700			49199	2016	35780	36068	48082	48082					0.0259552859138239
SLFFLWRFRRG	11	Unmodified	_SLFFLWRFRRG_					0	0	0			REV__ENST00000452918.6_2_19:19104239-19104413:-|nuORF	REV__ENST00000452918.6_2_19:19104239-19104413:-|nuORF	MSMS	A375_MHC_IP_R2	2	495.6864318847656	3	495.613967	1483.82007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.983	1	89.715	89.215	90.215	0.7318								0	0	0	0.16302	1	33867	33867		1.2148	0	1		+		49200	24906	35781	36069	48083	48083					0.09751533361918518
SLFFMHKA	8	Unmodified	_SLFFMHKA_					0	0	0			REV__nc|ENSG00000167723|Q8NET8-3|TRPV3	REV__nc|ENSG00000167723|Q8NET8-3|TRPV3	MSMS	A375_MHC_IP_R2	2	490.6685485839844	2	490.754756	979.494958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.16	1	114.87	114.37	115.37	0.70985								0	0	0	0.16876	1	43046	43046		9.3474	1.4373	1		+		49201	20788	35782	36070	48084	48084					0.004390502335809288
SLFGDVKKL	9	Unmodified	_SLFGDVKKL_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-SECPEP	A375_MHC_IP_R1	1	504.1997985839844	2	503.800217	1005.58588	-0.37522	-0.00018904	-0.3703	-0.00018656	-0.74553	-0.0003756	503.79997942619235	60.367	0.56054	60.367	60.057	60.618	0					19	10	2	0	0	0	0.50484	1	21758	21758		28.495	4.4739	1	1335700			49202	2373	35783	36071	48085	48085					0.08331217482702868
SLFGDVKKL	9	Unmodified	_SLFGDVKKL_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-SECPEP	A375_MHC_IP_R2	2	504.19970703125	2	503.800217	1005.58588	-1.069	-0.00053858	-0.046419	-2.3386E-05	-1.1155	-0.00056197	503.80020404060537	59.397	0.45324	60.144	59.896	60.349	0.74714					17	8	3	0	0	0	0.65527	1	22487	22487		17.113	0	1	1650000			49203	2373	35783	36071	48086	48086					0.08331217482702868
SLFGGSVKL	9	Unmodified	_SLFGGSVKL_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	A375_MHC_IP_R1	1	454.6657409667969	2	454.26601	906.517468	-0.26966	-0.0001225	0.031613	1.4361E-05	-0.23805	-0.00010814	454.2659983102402	81.228	2.9403	81.228	80.795	83.736	0					149	57	5	0	0	0	0.014789	4	29607	29607;29783;29815;30081		90.135	36.302	1	323170000			49204	7485	35784	36072	48087;48088;48089;48090	48087					0.06046972902856851
SLFGGSVKL	9	Unmodified	_SLFGGSVKL_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	A375_MHC_IP_R1	1	907.9240112304688	1	907.524744	906.517468	-0.19293	-0.00017509	-0.11266	-0.00010225	-0.3056	-0.00027734	907.5245226327278	81.228	0.86086	81.228	80.897	81.758	0					32	16	3	0	0	0	0.29123	1	29799	29799		31.268	2.1868	1	34677000			49205	7485	35784	36072	48091	48091					0.06046972902856851
SLFGGSVKL	9	Unmodified	_SLFGGSVKL_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	A375_MHC_IP_R2	2	454.6656494140625	2	454.26601	906.517468	-0.22537	-0.00010238	-0.25283	-0.00011485	-0.4782	-0.00021723	454.2658792429514	80.19	2.8417	80.935	80.607	83.449	0.74474					144	55	5	0	0	0	0.0090499	3	30386	30386;30600;30673		100.09	30.986	1	301570000			49206	7485	35784	36072	48092;48093;48094	48092					0.06046972902856851
SLFGGSVKL	9	Unmodified	_SLFGGSVKL_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MATCH	A375_MHC_IP_R2	2		1	907.524744	906.517468	-0.38642	-0.00035069	-0.19571	-0.00017762	-0.58213	-0.0005283	907.5244875943649	80.19	0.65705	80.935	80.708	81.365	0.74474	-0.14646	-3.525E-05	NaN	31.268	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27676000			49207	7485	35784	36072							0.06046972902856851
SLFGHTSLY	9	Unmodified	_SLFGHTSLY_					0	0	0			REV__ENST00000515631.1_1_4:39230179-39233922:+|nuORF	REV__ENST00000515631.1_1_4:39230179-39233922:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	513.1581420898438	2	512.758549	1023.50255	-0.30022	-0.00015394	-0.26644	-0.00013662	-0.56666	-0.00029056	513.2600644340745	71.541	0.35183	71.541	71.313	71.665	0					11	6	2	0	0	0	0.43707	1	25988	25988		28.487	0	1	4402400	+		49208	20044	35785	36073	48095	48095					-0.008265189651410765
SLFGKDIK	8	Unmodified	_SLFGKDIK_					0	0	0		ENSG00000175318|ENST00000309731|GRAMD2A	ENSG00000175318|ENST00000309731|GRAMD2A	ENSG00000175318|ENST00000309731|GRAMD2A	MULTI-MSMS	A375_MHC_IP_R1	1	454.665771484375	2	454.26601	906.517468	-0.26966	-0.0001225	0.031613	1.4361E-05	-0.23805	-0.00010814	454.2659983102402	81.228	2.9403	81.228	80.795	83.736	0					149	57	5	0	0	0	0.77374	1	30394	30394		13.906	1.6654	1	323170000			49209	7950	35786	36074	48096	48096					0.06046972902845482
SLFGKKYIL	9	Unmodified	_SLFGKKYIL_					0	0	0		ENSG00000115641|ENST00000530340|FHL2;nc|ENSG00000115641|Q14192-2|FHL2	ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	MULTI-SECPEP	A375_MHC_IP_R1	1	535.2260131835938	2	534.826235	1067.63792	-0.22389	-0.00011974	-0.38259	-0.00020462	-0.60648	-0.00032436	534.8259117603689	69.688	0.3539	69.688	69.478	69.832	0					9	6	2	0	0	0	0.73008	1	25330	25330		12.241	6.5088	1	1052300			49210	3328	35787	36075	48097	48097					0.10680380896474162
SLFGKKYIL	9	Unmodified	_SLFGKKYIL_					0	0	0		ENSG00000115641|ENST00000530340|FHL2;nc|ENSG00000115641|Q14192-2|FHL2	ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	MULTI-MATCH	A375_MHC_IP_R2	2		2	534.826235	1067.63792	-0.69386	-0.0003711	0.28427	0.00015203	-0.4096	-0.00021906	534.8263756050114	68.693	0.40381	69.428	69.171	69.575	0.73511	-0.13026	0.00056338	NaN	17.113	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1170600			49211	3328	35787	36075							0.10680380896474162
SLFGPGFNEN	10	Unmodified	_SLFGPGFNEN_					0	0	0			REV__ENST00000468090.5_1_21:45179541-45179850:+|nuORF	REV__ENST00000468090.5_1_21:45179541-45179850:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	541.1716918945312	2	541.251089	1080.48762	-0.45857	-0.0002482	2.2154	0.0011991	1.7569	0.0009509	541.2510010394498	72.418	0.65836	72.418	72.018	72.676	0					29	12	3	0	0	0	0.21466	1	26286	26286		47.749	29.602	1	2926000	+		49212	25077	35788	36076	48098	48098					-0.049400108331155934
SLFGPGFNEN	10	Unmodified	_SLFGPGFNEN_					0	0	0			REV__ENST00000468090.5_1_21:45179541-45179850:+|nuORF	REV__ENST00000468090.5_1_21:45179541-45179850:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	541.6510009765625	2	541.251089	1080.48762	-0.45857	-0.0002482	2.2154	0.0011991	1.7569	0.0009509	541.2510010394498	72.418	0.65836	72.418	72.018	72.676	0					29	12	3	0	0	0	0.6774	1	26326	26326		27.629	18.246	1	2926000	+		49213	25077	35788	36076	48099	48099					-0.049400108331155934
SLFGPGFNEN	10	Unmodified	_SLFGPGFNEN_					0	0	0			REV__ENST00000468090.5_1_21:45179541-45179850:+|nuORF	REV__ENST00000468090.5_1_21:45179541-45179850:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	541.171142578125	2	541.251089	1080.48762	-1.1417	-0.00061795	2.3964	0.001297	1.2546	0.00067908	541.251246810379	71.734	0.60848	72.468	72.111	72.72	0.73421					28	11	3	0	0	0	0.47386	1	27120	27120		47.749	28.492	1	4205300	+		49214	25077	35788	36076	48100	48100					-0.049400108331155934
SLFHQSTSSPY	11	Unmodified	_SLFHQSTSSPY_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;ENST00000438197.2_1_11:85444955-85468786:-|nuORF;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-SECPEP	A375_MHC_IP_R1	1	626.6939086914062	2	627.293485	1252.57242	-0.11821	-7.4152E-05	1.3769	0.00086374	1.2587	0.00078958	627.2953572180393	69.504	0.91023	69.504	69.275	70.185	0					23	17	2	0	0	0	0.9754	1	25447	25447		8.1555	0	1	1579100			49215	4889	35789	36077	48101	48101					-0.04376685087163423
SLFHRSEVELA	11	Unmodified	_SLFHRSEVELA_					0	0	0		ENSG00000176619|ENST00000325327|LMNB2	ENSG00000176619|ENST00000325327|LMNB2	ENSG00000176619|ENST00000325327|LMNB2	MSMS	A375_MHC_IP_R1	1	429.9336853027344	3	429.894577	1286.6619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.708	1	20.708	20.208	21.208	0								0	0	0	0.16336	1	5353	5353		1.2148	0	1				49216	8028	35790	36078	48102	48102					0.030035695921924344
SLFKDQMEL	9	Unmodified	_SLFKDQMEL_					0	0	0		ENSG00000133704|ENST00000256079|IPO8;nc|ENSG00000133704|O15397-2|IPO8	ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	MULTI-SECPEP	A375_MHC_IP_R1	1	556.1785888671875	2	555.778625	1109.5427	-0.68513	-0.00038078	0.67904	0.00037739	-0.0060895	-3.3844E-06	555.7790477558258	80.841	0.76143	80.841	80.441	81.202	0					28	14	3	0	0	0	0.01147	1	29526	29526		121.53	49.612	1	3935900			49217	4524	35791	36079	48103	48103					-0.007693403568737267
SLFKDQMEL	9	Unmodified	_SLFKDQMEL_					0	0	0		ENSG00000133704|ENST00000256079|IPO8;nc|ENSG00000133704|O15397-2|IPO8	ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	MULTI-MSMS	A375_MHC_IP_R2	2	555.6900634765625	2	555.778625	1109.5427	-0.74606	-0.00041464	-0.41904	-0.00023289	-1.1651	-0.00064754	555.7784607340853	80.044	0.60658	80.788	80.505	81.112	0.74473					25	11	3	0	0	0	0.32889	1	30426	30426		28.495	2.2264	1	5739500			49218	4524	35791	36079	48104	48104					-0.007693403568737267
SLFKIWLV	8	Unmodified	_SLFKIWLV_					0	0	0		ENSG00000128607|ENST00000335420|KLHDC10;nc|ENSG00000128607|Q6PID8-2|KLHDC10	ENSG00000128607|ENST00000335420|KLHDC10	ENSG00000128607|ENST00000335420|KLHDC10	MULTI-MSMS	A375_MHC_IP_R1	1	503.709716796875	2	503.310221	1004.60589	-0.13306	-6.6972E-05	-1.9529	-0.00098293	-2.086	-0.0010499	503.3090722194322	127.91	0.50482	127.91	127.62	128.13	0					15	9	3	0	0	0	0.15393	1	49090	49090		85.272	0	1	19461000			49219	4154	35792	36080	48105	48105					0.10377013213326336
SLFKIWLV	8	Unmodified	_SLFKIWLV_					0	0	0		ENSG00000128607|ENST00000335420|KLHDC10;nc|ENSG00000128607|Q6PID8-2|KLHDC10	ENSG00000128607|ENST00000335420|KLHDC10	ENSG00000128607|ENST00000335420|KLHDC10	MULTI-MSMS	A375_MHC_IP_R2	2	503.7094421386719	2	503.310221	1004.60589	-0.68614	-0.00034534	-1.4134	-0.00071136	-2.0995	-0.0010567	503.30913346738237	127.58	0.65889	127.84	127.71	128.37	0.26593					15	12	2	0	0	0	0.1677	1	50076	50076		74.929	0	1	15558000			49220	4154	35792	36080	48106	48106					0.10377013213326336
SLFKKLSST	9	Unmodified	_SLFKKLSST_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	506.1974792480469	2	505.797675	1009.5808	-0.76729	-0.0003881	-1.6124	-0.00081555	-2.3797	-0.0012036	505.79766608456265	45.359	0.85711	46.124	45.796	46.654	0.76519					24	16	2	0	0	0	0.69507	1	16964	16964		19.257	2.3147	1	2907500	+		49221	22110	35793	36081	48107	48107					0.07638913620087351
SLFKKMRRRRL	11	Unmodified	_SLFKKMRRRRL_					0	0	0		ENST00000350030.7_1_1:46078873-46079807:+|nuORF	ENST00000350030.7_1_1:46078873-46079807:+|nuORF	ENST00000350030.7_1_1:46078873-46079807:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	746.0588989257812	2	745.964271	1489.91399	-0.83175	-0.00062046	0.94492	0.00070487	0.11317	8.4417E-05	746.4666811518347	124.64	0.25119	124.97	124.75	125	0.32969					5	4	2	0	0	0	0.99331	1	48132	48132		5.2969	2.5617	1	46978000			49222	10923	35794	36082	48108	48108					0.18862929192550837
SLFKLIVKV	9	Unmodified	_SLFKLIVKV_					0	0	0		ENSG00000080345|ENST00000444746|RIF1;nc|ENSG00000080345|Q5UIP0-2|RIF1	ENSG00000080345|ENST00000444746|RIF1	ENSG00000080345|ENST00000444746|RIF1	MULTI-SECPEP	A375_MHC_IP_R1	1	523.29541015625	2	523.852253	1045.68995	-0.48257	-0.0002528	-0.14283	-7.4822E-05	-0.6254	-0.00032762	523.8521570076767	91.761	0.75909	91.761	91.401	92.16	0					20	14	2	0	0	0	0.65527	1	33712	33712		17.113	13.168	1	1394300			49223	1712	35795	36083	48109	48109					0.16893544310232755
SLFKLIVKV	9	Unmodified	_SLFKLIVKV_					0	0	0		ENSG00000080345|ENST00000444746|RIF1;nc|ENSG00000080345|Q5UIP0-2|RIF1	ENSG00000080345|ENST00000444746|RIF1	ENSG00000080345|ENST00000444746|RIF1	MULTI-SECPEP	A375_MHC_IP_R2	2	524.2517700195312	2	523.852253	1045.68995	-0.43153	-0.00022606	0.1504	7.8789E-05	-0.28113	-0.00014727	523.8520745633068	90.52	0.66064	91.254	90.956	91.616	0.7345					20	12	2	0	0	0	0.47674	1	34461	34461		23.79	17.584	1	1528200			49224	1712	35795	36083	48110	48110					0.16893544310232755
SLFKNVSI	8	Unmodified	_SLFKNVSI_					0	0	0			REV__GBF1|p.T87I|1|0.4|ENSG00000107862|chr10:102344147-102344147|C/T|missense_variant	REV__GBF1|p.T87I|1|0.4|ENSG00000107862|chr10:102344147-102344147|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	455.49603271484375	2	454.26601	906.517468	-0.22537	-0.00010238	-0.25283	-0.00011485	-0.4782	-0.00021723	454.2658792429514	80.19	2.8417	80.935	80.607	83.449	0.74474					144	55	5	0	0	0	0.51581	1	30446	30446		48.346	0.59716	1	301570000	+		49225	26667	35796	36084	48111	48111					0.06046972902856851
SLFLAVSGAI	10	Unmodified	_SLFLAVSGAI_					0	0	0			REV__nc|ENSG00000198739|Q86VH5-2|LRRTM3;REV__nc|ENSG00000176204|Q86VH4-2|LRRTM4	REV__nc|ENSG00000198739|Q86VH5-2|LRRTM3	MULTI-SECPEP	A375_MHC_IP_R1	1	488.702392578125	2	489.286943	976.559333	-0.34694	-0.00016975	0.24353	0.00011916	-0.10341	-5.0598E-05	489.28698164934616	80.014	0.51054	80.014	79.728	80.238	0					21	9	3	0	0	0	0.91556	1	29285	29285		6.2058	0	1	7710200	+		49226	22407;21393	35797	36085	48112	48112					0.07011528591374372
SLFLERQIV	9	Unmodified	_SLFLERQIV_					0	0	0			REV__ENST00000534976.5_1_12:121784114-121784270:-|nuORF	REV__ENST00000534976.5_1_12:121784114-121784270:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1851806640625	2	552.824224	1103.63389	-0.72491	-0.00040075	0.50364	0.00027842	-0.22128	-0.00012233	552.8246768244913	42.216	0.81854	42.988	42.348	43.167	0.7724					26	15	3	0	0	0	0.71541	1	15436	15436		11.64	0.81637	1	5284000	+		49227	25896	35798	36086	48113	48113					0.08622291402753035
SLFLRVRVS	9	Unmodified	_SLFLRVRVS_					0	0	0			REV__PLD5|p.L381F|1|0.34|ENSG00000180287|chr1:242107769-242107769|G/A|missense_variant	REV__PLD5|p.L381F|1|0.34|ENSG00000180287|chr1:242107769-242107769|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	359.95721435546875	3	359.557348	1075.65021	0.091199	3.2791E-05	-0.23527	-8.4593E-05	-0.14407	-5.1802E-05	359.55721098414693	55.133	0.40557	55.133	54.975	55.381	0					13	7	2	0	0	0	0.69674	1	19753	19753		4.5289	0	1	1588200	+		49228	27800	35799	36087	48114	48114					0.11541417359512707
SLFLSRKPN	9	Unmodified	_SLFLSRKPN_					0	0	0		COX10|p.S108F|1|0.56|ENSG00000006695|chr17:14076880-14076880|C/T|missense_variant	COX10|p.S108F|1|0.56|ENSG00000006695|chr17:14076880-14076880|C/T|missense_variant	COX10|p.S108F|1|0.56|ENSG00000006695|chr17:14076880-14076880|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	354.9222717285156	3	354.541586	1060.60293	-0.33756	-0.00011968	0.049465	1.7538E-05	-0.2881	-0.00010214	354.87605526979917	50.633	0.35467	51.387	51.26	51.615	0.75406					9	6	2	0	0	0	0.70411	1	19052	19052		6.6304	0.0069188	1	948390			49229	643	35800	36088	48115	48115					0.07505138088527019
SLFLWYCYRLG	11	Unmodified	_SLFLWYCYRLG_					0	0	0		ENSG00000174939|ENST00000308748|ASPHD1	ENSG00000174939|ENST00000308748|ASPHD1	ENSG00000174939|ENST00000308748|ASPHD1	MULTI-SECPEP	A375_MHC_IP_R2	2	474.6396789550781	3	474.240919	1419.70093	-0.81587	-0.00038692	-0.99563	-0.00047217	-1.8115	-0.00085909	474.2404616182501	18.849	0.16035	19.452	19.423	19.583	0.60308					6	4	2	0	0	0	1.0002	1	5659	5659		2.8433	0.21205	1	48981000			49230	7915	35801	36089	48116	48116					0.007865786221827875
SLFNANYDV	9	Unmodified	_SLFNANYDV_					0	0	0		ENSG00000117899|ENST00000261758|MESD	ENSG00000117899|ENST00000261758|MESD	ENSG00000117899|ENST00000261758|MESD	MULTI-MSMS	A375_MHC_IP_R1	1	522.2342529296875	2	521.745639	1041.47673	-0.46306	-0.0002416	-0.53778	-0.00028058	-1.0008	-0.00052218	521.745858706189	96.429	1.1186	96.429	96.018	97.137	0					27	21	2	0	0	0	0.27064	1	35414	35414		32.786	15.843	1	1992400			49231	3517	35802	36090	48117	48117					-0.04235413207447891
SLFNDSLHLAT	11	Unmodified	_SLFNDSLHLAT_					0	0	0			REV__CNOT6|p.S62F|1|0.48|ENSG00000113300|chr5:180550003-180550003|C/T|missense_variant	REV__CNOT6|p.S62F|1|0.48|ENSG00000113300|chr5:180550003-180550003|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	406.9434814453125	3	406.543544	1216.6088	-0.4304	-0.00017497	0.30999	0.00012603	-0.1204	-4.8949E-05	406.54360727773997	65.712	0.76353	65.712	65.309	66.072	0					21	14	3	0	0	0	0.72829	1	23817	23817		10.527	1.2837	1	2105000	+		49232	15810	35803	36091	48118	48118					0.009161918095287547
SLFNGALDQA	10	Unmodified	_SLFNGALDQA_					0	0	0		ENSG00000162695|ENST00000357650|SLC30A7	ENSG00000162695|ENST00000357650|SLC30A7	ENSG00000162695|ENST00000357650|SLC30A7	MULTI-MSMS	A375_MHC_IP_R1	1	518.6590576171875	2	518.258914	1034.50327	-0.52616	-0.00027269	0.33994	0.00017617	-0.18622	-9.6511E-05	518.2591538055865	93.878	0.75792	93.878	93.533	94.291	0					32	14	3	0	0	0	0.17669	1	34477	34477		51.63	5.9302	1	4617200			49233	6578	35804	36092	48119	48119					-0.01259724316082611
SLFNGALDQA	10	Unmodified	_SLFNGALDQA_					0	0	0		ENSG00000162695|ENST00000357650|SLC30A7	ENSG00000162695|ENST00000357650|SLC30A7	ENSG00000162695|ENST00000357650|SLC30A7	MULTI-MSMS	A375_MHC_IP_R2	2	518.6587524414062	2	518.258914	1034.50327	-0.62202	-0.00032236	1.1243	0.00058268	0.50228	0.00026031	518.2595264872344	93.134	1.0156	93.873	93.291	94.306	0.73902					26	19	2	0	0	0	0.11193	2	35383	35383;35393		61.09	22.136	1	4164200			49234	6578	35804	36092	48120;48121	48120					-0.01259724316082611
SLFNGSHYL	9	Unmodified	_SLFNGSHYL_					0	0	0		nc|ENSG00000064933|P54277-3|PMS1;ENSG00000064933|ENST00000441310|PMS1	nc|ENSG00000064933|P54277-3|PMS1	nc|ENSG00000064933|P54277-3|PMS1	MULTI-SECPEP	A375_MHC_IP_R1	1	519.6559448242188	2	519.256174	1036.49779	-0.5206	-0.00027032	0.19543	0.00010148	-0.32517	-0.00016885	519.2562631024945	74.323	0.55853	74.323	74.045	74.604	0					19	10	2	0	0	0	0.28475	1	27072	27072		32.305	11.852	1	5783600			49235	14471	35805	36093	48122	48122					-0.01899403107904618
SLFNSIHQV	9	Unmodified	_SLFNSIHQV_					0	0	0		ENST00000488250.5_1_12:48131352-48135452:-|nuORF;RAPGEF3|p.R731Gfs*39|1|0.15|ENSG00000079337|chr12:47740682-47740682|G/-|frameshift_variant;nc|ENSG00000079337|O95398-3|RAPGEF3;ENSG00000079337|ENST00000449771|RAPGEF3	ENST00000488250.5_1_12:48131352-48135452:-|nuORF	ENST00000488250.5_1_12:48131352-48135452:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1773071289062	2	522.777274	1043.53999	-0.72993	-0.00038159	-1.8407	-0.00096229	-2.5707	-0.0013439	522.777657837946	68.451	1.4194	68.451	67.804	69.224	0					47	27	3	0	0	0	0.31606	1	24741	24741		47.749	5.9091	1	4518900			49236	1695	35806	36094	48123	48123					0.019965723004588654
SLFNSIHQV	9	Unmodified	_SLFNSIHQV_					0	0	0		ENST00000488250.5_1_12:48131352-48135452:-|nuORF;RAPGEF3|p.R731Gfs*39|1|0.15|ENSG00000079337|chr12:47740682-47740682|G/-|frameshift_variant;nc|ENSG00000079337|O95398-3|RAPGEF3;ENSG00000079337|ENST00000449771|RAPGEF3	ENST00000488250.5_1_12:48131352-48135452:-|nuORF	ENST00000488250.5_1_12:48131352-48135452:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1773681640625	2	522.777274	1043.53999	-0.55616	-0.00029075	-2.0013	-0.0010462	-2.5574	-0.001337	522.7773708087818	67.469	1.1184	68.206	67.75	68.868	0.73631					40	21	3	0	0	0	0.10103	1	25505	25505		62.573	7.7991	1	4936500			49237	1695	35806	36094	48124	48124					0.019965723004588654
SLFPGFASQSD	11	Unmodified	_SLFPGFASQSD_					0	0	0		nc|ENSG00000122507|Q3SYG4-2|BBS9;nc|ENSG00000122507|Q3SYG4-4|BBS9;nc|ENSG00000122507|Q3SYG4-7|BBS9;nc|ENSG00000122507|Q3SYG4-3|BBS9;ENSG00000122507|ENST00000242067|BBS9	nc|ENSG00000122507|Q3SYG4-2|BBS9	nc|ENSG00000122507|Q3SYG4-2|BBS9	MULTI-SECPEP	A375_MHC_IP_R1	1	577.7080688476562	2	578.269478	1154.5244	-0.14849	-8.5864E-05	-0.15936	-9.2152E-05	-0.30784	-0.00017802	578.2693197108086	55.589	0.91544	55.589	55.279	56.194	0					27	17	2	0	0	0	0.9754	1	19767	19767		12.241	12.241	1	12214000			49238	3786	35807	36095	48125	48125					-0.046677590072249586
SLFPGKLEV	9	Unmodified	_SLFPGKLEV_					0	0	0		FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENST00000580966.1_1_17:18149569-18150009:-|nuORF	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	495.366455078125	2	495.286943	988.559333	-0.4064	-0.00020129	0.10942	5.4193E-05	-0.29699	-0.00014709	495.286936305991	88.016	1.4186	88.748	88.418	89.836	0.7318					73	27	3	0	0	0	0.084766	1	33719	33719		53.404	17.277	1	262770000			49239	8107	35808	36096	48126	48126					0.0645952859136969
SLFPGKLEVV	10	Unmodified	_SLFPGKLEVV_					0	0	0		FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENST00000580966.1_1_17:18149569-18150009:-|nuORF	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	545.220947265625	2	544.82115	1087.62775	-0.50503	-0.00027515	0.51948	0.00028302	0.014454	7.8746E-06	544.8213301717456	98.119	0.8644	98.119	97.794	98.659	0					39	16	4	0	0	0	0.4546	1	36018	36018		51.415	18.63	1	11146000			49240	8107	35809	36097	48127	48127					0.08743773171227076
SLFPGKLEVV	10	Unmodified	_SLFPGKLEVV_					0	0	0		FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENST00000580966.1_1_17:18149569-18150009:-|nuORF	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	544.2313842773438	2	544.82115	1087.62775	-0.99881	-0.00054417	0.27226	0.00014834	-0.72654	-0.00039584	544.821290016286	97.193	0.8121	97.949	97.62	98.432	0.75586					36	15	3	0	0	0	0.57412	1	36929	36929		43.982	17.714	1	16098000			49241	8107	35809	36097	48128	48128					0.08743773171227076
SLFPHANEWLK	11	Unmodified	_SLFPHANEWLK_					0	0	0		ENSG00000249961|ENST00000433154|TERB1;nc|ENSG00000249961|Q8NA31-3|TERB1;nc|ENSG00000249961|Q8NA31-2|TERB1	ENSG00000249961|ENST00000433154|TERB1	ENSG00000249961|ENST00000433154|TERB1	MSMS	A375_MHC_IP_R1	1	671.4866943359375	2	671.351137	1340.68772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.52	1	99.52	99.02	100.02	0								0	0	0	0.16249	1	36561	36561		5.7319	0	1				49242	9844	35810	36098	48129	48129					0.031004638344484192
SLFPHNPQFI	10	Unmodified	_SLFPHNPQFI_					0	0	0		ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	MULTI-SECPEP	A375_MHC_IP_R1	1	600.7138671875	2	600.314023	1198.61349	-0.51699	-0.00031035	0.062257	3.7374E-05	-0.45473	-0.00027298	600.313873337067	94.489	0.66179	94.489	94.14	94.802	0					34	12	4	0	0	0	0.061135	1	34698	34698		125.53	125.53	1	7724200			49243	3457	35811	36099	48130	48130					0.022131207429310962
SLFPHNPQFI	10	Unmodified	_SLFPHNPQFI_					0	0	0		ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	MULTI-MATCH	A375_MHC_IP_R2	2		2	600.314023	1198.61349	-0.37225	-0.00022347	-0.033484	-2.0101E-05	-0.40574	-0.00024357	600.3138462913303	93.594	0.6606	94.339	94.006	94.667	0.74473	-0.074897	-4.6928E-05	NaN	125.53	32	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8540200			49244	3457	35811	36099							0.022131207429310962
SLFPKVEYI	9	Unmodified	_SLFPKVEYI_					0	0	0		ENST00000597145.5_1_19:4685559-4714096:-|nuORF;nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9;ENST00000601764.5_1_19:4697564-4723732:-|nuORF	ENST00000597145.5_1_19:4685559-4714096:-|nuORF	ENST00000597145.5_1_19:4685559-4714096:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	548.70751953125	2	548.307875	1094.6012	-0.55273	-0.00030307	0.11621	6.3716E-05	-0.43652	-0.00023935	548.307783389951	99.505	0.66245	100.27	99.912	100.57	0.76278					14	12	2	0	0	0	0.43945	1	37761	37761		29.841	29.841	1	1771700			49245	5284	35812	36100	48131	48131					0.05768084279884533
SLFPKVEYI	9	Unmodified	_SLFPKVEYI_					0	0	0		ENST00000597145.5_1_19:4685559-4714096:-|nuORF;nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9;ENST00000601764.5_1_19:4697564-4723732:-|nuORF	ENST00000597145.5_1_19:4685559-4714096:-|nuORF	ENST00000597145.5_1_19:4685559-4714096:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	548.307875	1094.6012	-0.55273	-0.00030307	0.11621	6.3716E-05	-0.43652	-0.00023935	548.307783389951	99.505	0.66245	100.27	99.912	100.57	0.76278	-0.030497	-1.1748E-05	NaN	29.841	14	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1771700			49246	5284	35812	36100							0.05768084279884533
SLFPSEYQL	9	Unmodified	_SLFPSEYQL_					0	0	0		ENST00000471229.6_1_X:100878151-100878811:+|nuORF;ENST00000491568.6_1_X:100878151-100878310:+|nuORF;ENST00000341189.8_1_X:100878151-100879155:+|nuORF	ENST00000471229.6_1_X:100878151-100878811:+|nuORF	ENST00000471229.6_1_X:100878151-100878811:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	542.6713256835938	2	542.27149	1082.52843	-0.65104	-0.00035304	1.292	0.00070059	0.64092	0.00034755	542.2723581281255	95.658	1.0684	96.409	95.533	96.602	0.75045					26	20	2	0	0	0	0.55359	1	36345	36345		28.487	8.0332	1	1371400			49247	10865	35813	36101	48132	48132					-0.009536695135238915
SLFQCYNVCW	10	Unmodified	_SLFQCYNVCW_					0	0	0		ENSG00000146247|ENST00000275034|PHIP;PHIP|p.R1505Efs*9|1|0.47|ENSG00000146247|chr6:78946119-78946119|A/-|frameshift_variant	ENSG00000146247|ENST00000275034|PHIP	ENSG00000146247|ENST00000275034|PHIP	MULTI-MSMS	A375_MHC_IP_R1	1	631.7649536132812	2	631.770277	1261.526	-0.84248	-0.00053225	-0.96063	-0.0006069	-1.8031	-0.0011391	631.7699613361053	84.636	1.9307	84.636	84.141	86.072	0					142	37	7	0	0	0	0.71866	1	30824	30824		3.9444	0	1	118320000			49248	5612	35814	36102	48133	48133					-0.0943016451449239
SLFQHGPP	8	Unmodified	_SLFQHGPP_					0	0	0			REV__nc|ENSG00000125386|P78312-3|FAM193A	REV__nc|ENSG00000125386|P78312-3|FAM193A	MULTI-MSMS	A375_MHC_IP_R1	1	441.67645263671875	2	441.727052	881.439552	0.208	9.188E-05	-0.65046	-0.00028732	-0.44246	-0.00019544	441.72685276101254	48.164	0.60677	48.164	47.819	48.426	0					14	11	2	0	0	0	0.77488	1	16876	16876		13.508	13.508	1	1049200	+		49249	18338	35815	36103	48134	48134					-0.005910399625236096
SLFQHGPP	8	Unmodified	_SLFQHGPP_					0	0	0			REV__nc|ENSG00000125386|P78312-3|FAM193A	REV__nc|ENSG00000125386|P78312-3|FAM193A	MULTI-SECPEP	A375_MHC_IP_R1	1	441.1241149902344	2	441.727052	881.439552	0.208	9.188E-05	-0.65046	-0.00028732	-0.44246	-0.00019544	441.72685276101254	48.164	0.60677	48.164	47.819	48.426	0					14	11	2	0	0	0	0.94479	1	16881	16881		19.439	4.8573	1	1049200	+		49250	18338	35815	36103	48135	48135					-0.005910399625236096
SLFRHPKQV	9	Unmodified	_SLFRHPKQV_					0	0	0		nc|ENSG00000169570|Q8NBA8-2|DTWD2;ENSG00000169570|ENST00000510708|DTWD2	nc|ENSG00000169570|Q8NBA8-2|DTWD2	nc|ENSG00000169570|Q8NBA8-2|DTWD2	MULTI-MSMS	A375_MHC_IP_R1	1	371.6174011230469	3	371.217214	1110.62981	0.22135	8.217E-05	0.20996	7.7941E-05	0.43131	0.00016011	371.2172668884032	24.589	0.50545	24.589	24.447	24.953	0					19	9	3	0	0	0	0.074562	1	7034	7034		55.235	31.445	1	22977000			49251	7416	35816	36104	48136	48136					0.0789224669970281
SLFRHPKQV	9	Unmodified	_SLFRHPKQV_					0	0	0		nc|ENSG00000169570|Q8NBA8-2|DTWD2;ENSG00000169570|ENST00000510708|DTWD2	nc|ENSG00000169570|Q8NBA8-2|DTWD2	nc|ENSG00000169570|Q8NBA8-2|DTWD2	MULTI-MSMS	A375_MHC_IP_R2	2	371.6170959472656	3	371.217214	1110.62981	0.15118	5.612E-05	-0.46941	-0.00017425	-0.31823	-0.00011813	371.21702175374946	23.876	0.61126	24.506	24.333	24.944	0.63014					17	11	3	0	0	0	0.074562	2	7737	7723;7737		55.235	28.011	1	24495000			49252	7416	35816	36104	48137;48138	48138					0.0789224669970281
SLFRLDLL	8	Unmodified	_SLFRLDLL_					0	0	0			REV__ENST00000441673.2_1_2:74684653-74687805:+|nuORF	REV__ENST00000441673.2_1_2:74684653-74687805:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	489.19451904296875	2	488.794935	975.575317	0.040306	1.9701E-05	0.77269	0.00037769	0.81299	0.00039739	488.79519827819854	127.6	0.30332	127.6	127.47	127.77	0					14	5	4	0	0	0	0.15393	1	48939	48939		85.272	6.544	1	25674000	+		49253	22774	35817	36105	48139	48139					0.08655234828290759
SLFRPCHPPL	10	Unmodified	_SLFRPCHPPL_					0	0	0			REV__ENST00000422064.1_1_7:75145481-75157461:-|nuORF	REV__ENST00000422064.1_1_7:75145481-75157461:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	388.9330139160156	3	389.542821	1165.60663	0.54694	0.00021306	0.55341	0.00021558	1.1003	0.00042863	389.5430313128795	48.496	1.1642	48.496	47.768	48.933	0					39	22	2	0	0	0	0.90853	1	16835	16835		0.62683	0.62683	1	2563100	+		49254	24600	35818	36106	48140	48140					0.030454845907343042
SLFRPTLVI	9	Unmodified	_SLFRPTLVI_					0	0	0			REV__ENSG00000254852|ENST00000529166|NPIPA2	REV__ENSG00000254852|ENST00000529166|NPIPA2	MULTI-MSMS	A375_MHC_IP_R1	1	523.4637451171875	2	523.32386	1044.63317	-0.41819	-0.00021885	0.1969	0.00010304	-0.22129	-0.00011581	523.3240066431628	91.987	0.60655	91.987	91.655	92.261	0					22	11	3	0	0	0	0.22528	1	33752	33752		36.127	9.2434	1	3324300	+		49255	22712	35819	36107	48141	48141					0.1126349675369056
SLFRVITEV	9	Unmodified	_SLFRVITEV_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-SECPEP	A375_MHC_IP_R1	1	532.7108764648438	2	532.310949	1062.60735	-0.63766	-0.00033943	-0.22676	-0.00012071	-0.86442	-0.00046014	532.3108115334484	99.428	1.1617	99.428	99.117	100.28	0					50	22	4	0	0	0	0.053555	1	36495	36495		90.135	27.562	1	21445000			49256	5898	35820	36108	48142	48142					0.07854602511406483
SLFRVITEV	9	Unmodified	_SLFRVITEV_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-SECPEP	A375_MHC_IP_R2	2	532.6356811523438	2	532.310949	1062.60735	-0.66846	-0.00035583	0.16533	8.8009E-05	-0.50313	-0.00026782	532.3109449454705	98.451	0.71169	99.211	98.895	99.606	0.75977					44	13	4	0	0	0	0.038931	1	37319	37319		100.09	37.518	1	19288000			49257	5898	35820	36108	48143	48143					0.07854602511406483
SLFRWRHQA	9	Unmodified	_SLFRWRHQA_					0	0	0		ENSG00000105401|ENST00000222005|CDC37;ENST00000591248.5_1_19:10506000-10514173:-|nuORF	ENSG00000105401|ENST00000222005|CDC37	ENSG00000105401|ENST00000222005|CDC37	MULTI-SECPEP	A375_MHC_IP_R1	1	400.6202392578125	3	400.884346	1199.63121	-0.34539	-0.00013846	0.44902	0.00018	0.10363	4.1542E-05	400.88443282631044	36.196	0.81368	36.196	35.778	36.592	0					50	15	4	0	0	0	0.43207	1	12022	12022		33.445	33.445	1	14946000			49258	2601	35821	36109	48144	48144					0.03937880788453185
SLFRWRHQA	9	Unmodified	_SLFRWRHQA_					0	0	0		ENSG00000105401|ENST00000222005|CDC37;ENST00000591248.5_1_19:10506000-10514173:-|nuORF	ENSG00000105401|ENST00000222005|CDC37	ENSG00000105401|ENST00000222005|CDC37	MULTI-MSMS	A375_MHC_IP_R2	2	401.28424072265625	3	400.884346	1199.63121	-0.24104	-9.663E-05	0.08822	3.5366E-05	-0.15282	-6.1264E-05	400.88434624063285	34.939	0.65542	35.703	35.375	36.03	0.76338					29	12	3	0	0	0	0.034721	1	12606	12606		70.929	70.929	1	15766000			49259	2601	35821	36109	48145	48145					0.03937880788453185
SLFRYFELLEK	11	Unmodified	_SLFRYFELLEK_					0	0	0		nc|ENSG00000166762|Q96P56-2|CATSPER2;ENSG00000166762|ENST00000396879|CATSPER2	nc|ENSG00000166762|Q96P56-2|CATSPER2	nc|ENSG00000166762|Q96P56-2|CATSPER2	MULTI-SECPEP	A375_MHC_IP_R1	1	723.3226318359375	2	722.895377	1443.7762	-0.58011	-0.00041936	-2.0702	-0.0014965	-2.6503	-0.0019159	722.8938717102687	125.48	0.40274	125.48	125.25	125.65	0					9	7	2	0	0	0	0.98524	1	47822	47822		7.1017	1.8048	1	74515000			49260	7109	35822	36110	48146	48146					0.07206459354279104
SLFSASPLPPL	11	Unmodified	_SLFSASPLPPL_					0	0	0		ENSG00000150750|ENST00000280325|POU2AF2	ENSG00000150750|ENST00000280325|POU2AF2	ENSG00000150750|ENST00000280325|POU2AF2	MSMS	A375_MHC_IP_R1	1	565.2210083007812	2	564.818607	1127.62266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.02	1	126.02	125.52	126.52	0								0	0	0	0.16161	1	48068	48068		13.042	0	1				49261	5859	35823	36111	48147	48147					0.06395469308608881
SLFSAVHKI	9	Unmodified	_SLFSAVHKI_					0	0	0		ENST00000519872.1_1_8:37594193-37598024:+|nuORF;nc|ENSG00000147475|O94905-2|ERLIN2;nc|ENSG00000147475|O94905-3|ERLIN2;ENSG00000147475|ENST00000519638|ERLIN2	ENST00000519872.1_1_8:37594193-37598024:+|nuORF	ENST00000519872.1_1_8:37594193-37598024:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	500.99945068359375	2	501.292559	1000.57057	-0.39414	-0.00019758	-0.43871	-0.00021992	-0.83285	-0.0004175	501.2922274425701	55.132	0.6093	55.132	54.873	55.482	0					18	11	2	0	0	0	0.16595	1	19701	19701		45.74	1.9675	1	6916400			49262	5686	35824	36112	48148	48148					0.07030350685522535
SLFSDEFKV	9	Unmodified	_SLFSDEFKV_					0	0	0		ENSG00000137845|ENST00000260408|ADAM10;ENST00000558733.5_1_15:58947546-59041769:-|nuORF	ENSG00000137845|ENST00000260408|ADAM10	ENSG00000137845|ENST00000260408|ADAM10	MULTI-SECPEP	A375_MHC_IP_R1	1	536.6716918945312	2	536.27149	1070.52843	-0.60867	-0.00032641	0.22	0.00011798	-0.38867	-0.00020843	536.2713710211169	97.072	0.70859	97.072	96.781	97.49	0					23	13	3	0	0	0	0.47674	1	35655	35655		23.79	0	1	2041200			49263	4929	35825	36113	48149	48149					-0.004016695135305781
SLFSDEFKV	9	Unmodified	_SLFSDEFKV_					0	0	0		ENSG00000137845|ENST00000260408|ADAM10;ENST00000558733.5_1_15:58947546-59041769:-|nuORF	ENSG00000137845|ENST00000260408|ADAM10	ENSG00000137845|ENST00000260408|ADAM10	MULTI-MSMS	A375_MHC_IP_R2	2	536.6713256835938	2	536.27149	1070.52843	-0.87277	-0.00046804	0.69563	0.00037305	-0.17714	-9.4998E-05	536.271616797486	96.246	0.76077	96.996	96.653	97.413	0.75044					27	14	3	0	0	0	0.22013	1	36529	36529		36.506	7.4246	1	1706000			49264	4929	35825	36113	48150	48150					-0.004016695135305781
SLFSDEWPV	9	Unmodified	_SLFSDEWPV_					0	0	0			REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2	REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-MSMS	A375_MHC_IP_R2	2	540.2184448242188	2	540.25584	1078.49713	-0.79982	-0.00043211	1.6623	0.00089808	0.86251	0.00046598	540.2568888757561	104.01	1.1682	104.78	104.4	105.56	0.76308					36	22	3	0	0	0	0.62719	1	39272	39272		13.508	0.97634	1	3389000	+		49265	17464	35826	36114	48151	48151					-0.03898242547643349
SLFSGKPEV	9	Unmodified	_SLFSGKPEV_					0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3;ENST00000489332.1_1_X:70467340-70473105:-|nuORF	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	MULTI-MSMS	A375_MHC_IP_R1	1	482.66064453125	2	482.260925	962.507297	-0.34197	-0.00016492	0.34615	0.00016693	0.0041777	2.0147E-06	482.2609837229173	57.458	0.91455	57.458	57.263	58.177	0					23	17	2	0	0	0	0.10622	1	20633	20633		49.554	11.379	1	4097500			49266	5661	35827	36115	48152	48152					0.02454365177618456
SLFSMLHQA	9	Unmodified	_SLFSMLHQA_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R2	2	517.6607666015625	2	517.260402	1032.50625	-0.66052	-0.00034166	0.029852	1.5441E-05	-0.63067	-0.00032622	517.2606685050678	89.488	0.35357	90.219	89.985	90.339	0.7318					10	6	2	0	0	0	0.17338	2	34058	34039;34058		39.95	14.55	1	1743700			49267	9114	35828	36116	48153;48154	48154					-0.008701724629190721
SLFSSPKEQS	10	Unmodified	_SLFSSPKEQS_					0	0	0		DCAF8L1|p.E24K|1|0.24|ENSG00000226372|chrX:27981265-27981265|C/T|missense_variant	DCAF8L1|p.E24K|1|0.24|ENSG00000226372|chrX:27981265-27981265|C/T|missense_variant	DCAF8L1|p.E24K|1|0.24|ENSG00000226372|chrX:27981265-27981265|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	556.1982421875	2	555.277303	1108.54005	-0.52709	-0.00029268	0.095751	5.3168E-05	-0.43134	-0.00023951	555.2772770733798	37.684	0.51016	37.684	37.454	37.964	0					23	9	3	0	0	0	0.39599	1	12705	12705		34.402	0	1	7113400			49268	714	35829	36117	48155	48155					-0.009874724901919762
SLFSSPPEI	9	Unmodified	_SLFSSPPEI_					0	0	0		nc|ENSG00000166263|Q6ZWJ1-2|STXBP4;ENSG00000166263|ENST00000376352|STXBP4	nc|ENSG00000166263|Q6ZWJ1-2|STXBP4	nc|ENSG00000166263|Q6ZWJ1-2|STXBP4	MULTI-MSMS	A375_MHC_IP_R1	1	977.814697265625	1	976.498589	975.491313	0.32028	0.00031275	-0.55371	-0.0005407	-0.23343	-0.00022795	976.4981828047927	110.04	1.2227	110.04	109.52	110.75	0					42	23	2	0	0	0	0.70307	1	40482	40482		6.7232	1.4925	1	9122000			49269	7052	35830	36118	48156	48156					0.002586589407201245
SLFSSPPEI	9	Unmodified	_SLFSSPPEI_					0	0	0		nc|ENSG00000166263|Q6ZWJ1-2|STXBP4;ENSG00000166263|ENST00000376352|STXBP4	nc|ENSG00000166263|Q6ZWJ1-2|STXBP4	nc|ENSG00000166263|Q6ZWJ1-2|STXBP4	MULTI-SECPEP	A375_MHC_IP_R1	1	489.1527404785156	2	488.752933	975.491313	-0.10292	-5.0304E-05	-0.15992	-7.8162E-05	-0.26284	-0.00012847	488.7528565522334	110.06	1.1206	110.06	109.52	110.65	0					49	21	3	0	0	0	0.021422	1	40283	40283		108	7.6255	1	3972400			49270	7052	35830	36118	48157	48157					0.002586589407201245
SLFSSPPEI	9	Unmodified	_SLFSSPPEI_					0	0	0		nc|ENSG00000166263|Q6ZWJ1-2|STXBP4;ENSG00000166263|ENST00000376352|STXBP4	nc|ENSG00000166263|Q6ZWJ1-2|STXBP4	nc|ENSG00000166263|Q6ZWJ1-2|STXBP4	MULTI-MSMS	A375_MHC_IP_R2	2	976.5675659179688	1	976.498589	975.491313	0.062711	6.1237E-05	-0.079171	-7.7311E-05	-0.016461	-1.6074E-05	976.4986402684872	109.21	1.3738	109.96	109.37	110.74	0.74684					43	26	2	0	0	0	0.01001	1	41192	41192		123.45	15.454	1	5210500			49271	7052	35830	36118	48158	48158					0.002586589407201245
SLFSSPPEI	9	Unmodified	_SLFSSPPEI_					0	0	0		nc|ENSG00000166263|Q6ZWJ1-2|STXBP4;ENSG00000166263|ENST00000376352|STXBP4	nc|ENSG00000166263|Q6ZWJ1-2|STXBP4	nc|ENSG00000166263|Q6ZWJ1-2|STXBP4	MULTI-SECPEP	A375_MHC_IP_R2	2	489.1524658203125	2	488.752933	975.491313	-0.48141	-0.00023529	0.16071	7.8546E-05	-0.3207	-0.00015674	488.75297373822025	109.28	1.2733	110.03	109.47	110.74	0.74684					57	24	3	0	0	0	8.931E-05	1	41156	41156		144.35	15.985	1	4822800			49272	7052	35830	36118	48159	48159					0.002586589407201245
SLFSTPHGA	9	Unmodified	_SLFSTPHGA_					0	0	0		ENST00000462237.5_1_X:74514443-74523343:+|nuORF;ENSG00000094841|ENST00000373383|UPRT	ENST00000462237.5_1_X:74514443-74523343:+|nuORF	ENST00000462237.5_1_X:74514443-74523343:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	459.1297607421875	2	458.729792	915.445031	-0.46774	-0.00021457	-0.0852	-3.9084E-05	-0.55294	-0.00025365	458.7297707408645	44.972	0.45924	45.741	45.492	45.951	0.7691					11	8	2	0	0	0	0.3243	1	16807	16807		44.407	15.92	1	2179000			49273	2026	35831	36119	48160	48160					-0.016073611707156488
SLFSTPHGA	9	Unmodified	_SLFSTPHGA_					0	0	0		ENST00000462237.5_1_X:74514443-74523343:+|nuORF;ENSG00000094841|ENST00000373383|UPRT	ENST00000462237.5_1_X:74514443-74523343:+|nuORF	ENST00000462237.5_1_X:74514443-74523343:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	458.729792	915.445031	-0.10655	-4.8879E-05	-0.28436	-0.00013044	-0.39091	-0.00017932	458.7297150220821	45.902	0.55869	45.902	45.585	46.144	0	0.080794	-0.00012253	NaN	44.407	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2043900			49274	2026	35831	36119							-0.016073611707156488
SLFSVPFFL	9	Unmodified	_SLFSVPFFL_					0	0	0		ENSG00000100926|ENST00000261789|TM9SF1;nc|ENSG00000100926|O15321-2|TM9SF1	ENSG00000100926|ENST00000261789|TM9SF1	ENSG00000100926|ENST00000261789|TM9SF1	MULTI-MSMS	A375_MHC_IP_R1	1	1056.3154296875	1	1056.57645	1055.56917	-0.19607	-0.00020716	0.33159	0.00035035	0.13552	0.00014319	1056.5770218633268	139.19	0.30231	139.19	139.06	139.37	0					10	5	3	0	0	0	0.1478	1	53537	53537		42.095	6.0504	1	3957900			49275	2233	35832	36120	48161	48161					0.04360716596761449
SLFTEPNEI	9	Unmodified	_SLFTEPNEI_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	A375_MHC_IP_R2	2	525.7149047851562	2	525.261122	1048.50769	-0.43626	-0.00022915	-0.54461	-0.00028606	-0.98087	-0.00051521	525.2608696746125	104.92	1.2714	105.69	105.26	106.53	0.76308					37	24	2	0	0	0	0.46038	1	39825	39825		21.747	4.8044	1	2681100			49276	5349	35833	36121	48162	48162					-0.014622598931964603
SLFVAGSLAI	10	Unmodified	_SLFVAGSLAI_					0	0	0			REV__tr|U7T0S8|U7T0S8_FUSNUCitratetransporter-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00632PE=3SV=1	REV__tr|U7T0S8|U7T0S8_FUSNUCitratetransporter-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00632PE=3SV=1	MSMS	A375_MHC_IP_R2	2	489.72918701171875	2	489.286943	976.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.295	1	91.027	90.527	91.527	0.7318								0	0	0	0.13854	1	34356	34356		30.637	0	1		+		49277	28681	35834	36122	48163	48163					0.07011528591374372
SLFVLGAPVS	10	Unmodified	_SLFVLGAPVS_					0	0	0			REV__ENST00000533086.5_1_19:15226257-15226476:-|nuORF	REV__ENST00000533086.5_1_19:15226257-15226476:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	495.6869201660156	2	495.286943	988.559333	-0.26842	-0.00013294	0.087764	4.3468E-05	-0.18066	-8.9476E-05	495.2868810656289	88.978	1.4198	88.978	88.561	89.981	0					96	27	5	0	0	0	0.39599	1	33020	33020		34.402	0.95682	1	233400000	+		49278	25876	35835	36123	48164	48164					0.06459528591381059
SLFVLGAPVSV	11	Unmodified	_SLFVLGAPVSV_					0	0	0			REV__ENST00000533086.5_1_19:15226257-15226476:-|nuORF	REV__ENST00000533086.5_1_19:15226257-15226476:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	545.357177734375	2	544.82115	1087.62775	-0.50503	-0.00027515	0.51948	0.00028302	0.014454	7.8746E-06	544.8213301717456	98.119	0.8644	98.119	97.794	98.659	0					39	16	4	0	0	0	0.49816	1	36157	36157		31.268	4.0451	1	11146000	+		49279	25876	35836	36124	48165	48165					0.08743773171249813
SLFVSKFDL	9	Unmodified	_SLFVSKFDL_					0	0	0			REV__ENST00000490154.1_1_16:1887712-1889402:-|nuORF	REV__ENST00000490154.1_1_16:1887712-1889402:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	528.6907958984375	2	528.292225	1054.5699	-0.42076	-0.00022228	-1.72	-0.00090867	-2.1408	-0.0011309	528.2911377077594	62.656	1.0251	62.656	62.249	63.274	0					26	19	2	0	0	0	0.60917	1	22755	22755		5.7319	0	1	1138400	+		49280	20231	35837	36125	48166	48166					0.04479511245813228
SLFYIACLL	9	Unmodified	_SLFYIACLL_					0	0	0			REV__ENSG00000256188|ENST00000539585|TAS2R30	REV__ENSG00000256188|ENST00000539585|TAS2R30	MULTI-SECPEP	A375_MHC_IP_R2	2	522.4566650390625	2	521.785721	1041.55689	-0.51456	-0.00026849	-1.5596	-0.00081378	-2.0742	-0.0010823	521.7833206648244	89.517	0.25522	90.248	90.135	90.391	0.7318					6	4	2	0	0	0	0.52144	1	34103	34103		3.9444	0	1	451230	+		49281	22880	35838	36126	48167	48167					0.03777356862065062
SLFYLENKFEW	11	Unmodified	_SLFYLENKFEW_					0	0	0			REV__ENSG00000154262|ENST00000284425|ABCA6	REV__ENSG00000154262|ENST00000284425|ABCA6	MSMS	A375_MHC_IP_R1	1	492.4775085449219	3	492.578365	1474.71327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.371	1	42.371	41.871	42.871	0								0	0	0	0.1628	1	14682	14682		4.1166	2.787	1		+		49282	19875	35839	36127	48168	48168					-0.005101064337850403
SLGAGWINP	9	Unmodified	_SLGAGWINP_					0	0	0			REV__ENSG00000164933|ENST00000297578|SLC25A32	REV__ENSG00000164933|ENST00000297578|SLC25A32	MSMS	A375_MHC_IP_R2	2	457.6709899902344	2	457.74016	913.465767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.87	1	42.645	42.145	43.145	0.77451								0	0	0	0.15069	1	15557	15557		20.454	3.5113	1		+		49283	20528	35840	36128	48169	48169					0.005572292089368602
SLGASLLLA	9	Unmodified	_SLGASLLLA_					0	0	0			REV__CDH10|p.P606S|1|0.24|ENSG00000040731|chr5:24491636-24491636|G/A|missense_variant	REV__CDH10|p.P606S|1|0.24|ENSG00000040731|chr5:24491636-24491636|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	846.4099731445312	1	844.513845	843.506569	-0.63958	-0.00054013	0.26621	0.00022482	-0.37336	-0.00031531	844.5140236620158	83.839	0.56279	84.579	84.305	84.868	0.73962					23	10	3	0	0	0	0.1478	1	31866	31866		42.095	0	1	9168500	+		49284	15621	35841	36129	48170	48170					0.07855570528579392
SLGAYISTL	9	Unmodified	_SLGAYISTL_					0	0	0		nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1;PDXDC1|p.Y281Cfs*12|1|0.22|ENSG00000179889|chr16:15017148-15017149|TA/-|frameshift_variant;nc|ENSG00000179889|Q6P996-2|PDXDC1;ENST00000570001.5_1_16:15069056-15125764:+|nuORF	nc|ENSG00000179889|Q6P996-4|PDXDC1	nc|ENSG00000179889|Q6P996-4|PDXDC1	MULTI-SECPEP	A375_MHC_IP_R1	1	463.1551513671875	2	462.755475	923.496398	-0.24642	-0.00011403	-0.23987	-0.000111	-0.48629	-0.00022503	462.7553594766214	99.499	0.50578	99.499	99.319	99.825	0					16	9	2	0	0	0	0.050875	1	36574	36574		85.357	0	1	5220700			49285	8258	35842	36130	48171	48171					0.031589628033202644
SLGDEESNL	9	Unmodified	_SLGDEESNL_					0	0	0		ENST00000594706.5_1_19:57344696-57347395:-|nuORF	ENST00000594706.5_1_19:57344696-57347395:-|nuORF	ENST00000594706.5_1_19:57344696-57347395:-|nuORF	MSMS	A375_MHC_IP_R2	2	482.15802001953125	2	482.216911	962.41927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.834	1	83.577	83.077	84.077	0.74263								0	0	0	0.1535	1	31472	31472		15.847	2.3393	1				49286	13831	35843	36131	48172	48172					-0.06344300203659259
SLGDRNRYHY	10	Unmodified	_SLGDRNRYHY_					0	0	0			REV__ENSG00000148429|ENST00000609104|USP6NL	REV__ENSG00000148429|ENST00000609104|USP6NL	MULTI-SECPEP	A375_MHC_IP_R1	1	641.1322021484375	2	640.810168	1279.60578	-0.55502	-0.00035566	2.8742	0.0018418	2.3192	0.0014862	641.3122463320491	102.99	0.20459	102.99	102.91	103.12	0					5	3	2	0	0	0	0.9269	1	37878	37878		10.824	4.1008	1	454720	+		49287	15677	35844	36132	48173	48173					-0.02283638524613707
SLGDTVAPGEN	11	Unmodified	_SLGDTVAPGEN_					0	0	0		nc|ENSG00000185792|Q7RTR0-2|NLRP9	nc|ENSG00000185792|Q7RTR0-2|NLRP9	nc|ENSG00000185792|Q7RTR0-2|NLRP9	MSMS	A375_MHC_IP_R1	1	530.1790771484375	2	530.251286	1058.48802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.78	1	133.78	133.28	134.28	0								0	0	0	0.16213	1	51590	51590		7.609	0	1				49288	14814	35845	36133	48174	48174					-0.038886359039452145
SLGEASDQNY	10	Unmodified	_SLGEASDQNY_					0	0	0			REV__ENST00000486863.1_1_6:108843484-108843625:+|nuORF	REV__ENST00000486863.1_1_6:108843484-108843625:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	543.21484375	2	542.233093	1082.45163	-0.8093	-0.00043883	2.0123	0.0010911	1.203	0.00065231	542.7345093274937	41.779	0.71511	41.779	41.317	42.032	0					27	13	3	0	0	0	0.70496	1	14318	14318		10.074	2.7847	1	1575400	+		49289	25326	35846	36134	48175	48175					-0.08629512800644079
SLGEDHVIL	9	Unmodified	_SLGEDHVIL_					0	0	0		ENSG00000056586|ENST00000357244|RC3H2	ENSG00000056586|ENST00000357244|RC3H2	ENSG00000056586|ENST00000357244|RC3H2	MULTI-MSMS	A375_MHC_IP_R2	2	491.6297912597656	2	491.763832	981.513111	-0.52665	-0.00025899	-0.41728	-0.0002052	-0.94393	-0.00046419	491.7635773633238	77.086	1.3197	77.829	77.252	78.572	0.74293					70	25	4	0	0	0	0.55818	1	29455	29455		16.942	0	1	15723000			49290	1278	35847	36135	48176	48176					0.02161463689287757
SLGEEWRRW	9	Unmodified	_SLGEEWRRW_					0	0	0			REV__ENST00000560165.5_1_15:60678230-60690125:-|nuORF	REV__ENST00000560165.5_1_15:60678230-60690125:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	406.303955078125	3	406.871995	1217.59415	-0.45174	-0.0001838	-0.52659	-0.00021425	-0.97832	-0.00039805	407.20619680723024	36.364	0.35609	36.364	36.236	36.592	0					11	6	2	0	0	0	0.775	1	12117	12117		7.1017	0	1	2469000	+		49291	26164	35848	36136	48177	48177					-0.0059383554796568205
SLGEEWRRW	9	Unmodified	_SLGEEWRRW_					0	0	0			REV__ENST00000560165.5_1_15:60678230-60690125:-|nuORF	REV__ENST00000560165.5_1_15:60678230-60690125:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	407.2715759277344	3	406.871995	1217.59415	-0.19227	-7.8227E-05	-1.1993	-0.00048797	-1.3916	-0.0005662	406.871467072046	35.599	0.55778	36.363	36.132	36.69	0.76338					20	10	3	0	0	0	0.71071	1	12952	12952		6.6304	0	1	3008900	+		49292	26164	35848	36136	48178	48178					-0.0059383554796568205
SLGEFTGSSAF	11	Unmodified	_SLGEFTGSSAF_					0	0	0			REV__ENST00000557786.1_1_14:102904647-102904752:+|nuORF	REV__ENST00000557786.1_1_14:102904647-102904752:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	551.7061157226562	2	551.756204	1101.49785	-0.7371	-0.0004067	0.45308	0.00024999	-0.28402	-0.00015671	551.7564634703183	52.965	0.55634	52.965	52.643	53.199	0					19	10	3	0	0	0	0.73332	1	18750	18750		5.7319	0	1	2656300	+		49293	26131	35849	36137	48179	48179					-0.0488344789855546
SLGEGHLSV	9	Unmodified	_SLGEGHLSV_					0	0	0		AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK	AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	450.1348876953125	2	449.735074	897.455596	0.078316	3.5221E-05	-0.068119	-3.0635E-05	0.010197	4.5861E-06	449.7349797229635	44.285	0.61521	44.285	44.061	44.676	0					25	11	4	0	0	0	0.009271	1	15436	15436		103.75	49.915	1	8357800			49294	87	35850	36138	48180	48180					0.0027662148371518924
SLGEGHLSV	9	Unmodified	_SLGEGHLSV_					0	0	0		AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK	AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	450.1349792480469	2	449.735074	897.455596	-0.14704	-6.613E-05	-0.099786	-4.4877E-05	-0.24683	-0.00011101	449.735055653486	43.43	0.60691	44.203	43.926	44.533	0.7724					22	11	3	0	0	0	0.027983	1	16177	16177		103.75	49.915	1	5661300			49295	87	35850	36138	48181	48181					0.0027662148371518924
SLGEMVLLI	9	Unmodified	_SLGEMVLLI_					0	0	0			REV__ENST00000533005.5_1_11:67811756-67818283:+|nuORF	REV__ENST00000533005.5_1_11:67811756-67818283:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	973.8124389648438	1	974.559081	973.551804	-0.021923	-2.1365E-05	-0.45647	-0.00044486	-0.4784	-0.00046623	974.558917667423	131.22	0.45958	131.41	131.29	131.75	0.18953					21	8	4	0	0	0	0.16229	1	51650	51650		48.346	0	1	44206000	+		49296	17638	35851	36139	48182	48182					0.06397052999466268
SLGFQKSGI	9	Unmodified	_SLGFQKSGI_					0	0	0			REV__ENSG00000196569|ENST00000421865|LAMA2	REV__ENSG00000196569|ENST00000421865|LAMA2	MULTI-SECPEP	A375_MHC_IP_R1	1	469.16107177734375	2	468.761092	935.507631	-0.38038	-0.00017831	0.39237	0.00018393	0.011991	5.6208E-06	468.76121880343413	58.404	0.81213	58.404	57.873	58.685	0					30	15	3	0	0	0	0.31606	1	20949	20949		26.268	0	1	7592100	+		49297	22209	35852	36140	48183	48183					0.03729784897484478
SLGFTAVAFV	10	Unmodified	_SLGFTAVAFV_					0	0	0		ENST00000569969.5_2_16:28993234-28993426:+|nuORF;nc|ENSG00000169682|Q9H2V7-4|SPNS1;ENSG00000169682|ENST00000311008|SPNS1	ENST00000569969.5_2_16:28993234-28993426:+|nuORF	ENST00000569969.5_2_16:28993234-28993426:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	506.6781005859375	2	506.279118	1010.54368	-0.72478	-0.00036694	-1.3331	-0.00067494	-2.0579	-0.0010419	506.2782581242831	76.505	1.2694	77.245	76.893	78.162	0.74052					53	24	3	0	0	0	0.53225	1	29022	29022		20.454	0	1	6126900			49298	7428	35853	36141	48184	48184					0.03883242074323334
SLGGHGKR	8	Unmodified	_SLGGHGKR_					0	0	0			REV__FLG2|p.G243R|1|0.25|ENSG00000143520|chr1:152357059-152357059|C/T|missense_variant	REV__FLG2|p.G243R|1|0.25|ENSG00000143520|chr1:152357059-152357059|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	406.63018798828125	2	406.230294	810.446034	0.21579	8.7659E-05	-0.060836	-2.4713E-05	0.15495	6.2945E-05	406.2301960415241	100.29	2.6511	101.06	100.07	102.72	0.76278					90	51	3	0	0	0	0.77797	1	38229	38229		2.3027	0	1	4447100	+	+	49299	15890	35854	36142	48185	48185					0.03322897988846307
SLGGLSVRE	9	Unmodified	_SLGGLSVRE_					0	0	0			REV__ENST00000468048.5_1_3:183898306-183899072:+|nuORF	REV__ENST00000468048.5_1_3:183898306-183899072:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	459.6555480957031	2	459.256174	916.497795	-0.86539	-0.00039744	0.16206	7.4428E-05	-0.70333	-0.00032301	459.2562069819108	36.716	0.30603	37.487	37.359	37.665	0.7709					8	5	2	0	0	0	0.60917	1	13437	13437		13.906	0	1	2037200	+		49300	25071	35855	36143	48186	48186					0.03620596892096728
SLGGSITAFH	10	Unmodified	_SLGGSITAFH_					0	0	0		ENST00000567567.5_1_15:31233675-31258111:-|nuORF;ENSG00000166912|ENST00000435680|MTMR10;ENST00000566338.5_1_15:31233675-31240771:-|nuORF	ENST00000567567.5_1_15:31233675-31258111:-|nuORF	ENST00000567567.5_1_15:31233675-31258111:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	496.1662292480469	2	495.256174	988.497795	-0.41258	-0.00020433	0.28804	0.00014266	-0.12453	-6.1677E-05	495.2579182290609	64.463	0.86593	65.203	64.749	65.615	0.74022					32	16	3	0	0	0	0.55789	1	24318	24318		24.021	2.4836	1	2051200			49301	7132	35856	36144	48187	48187					0.003085968920800042
SLGHPAFH	8	Unmodified	_SLGHPAFH_					0	0	0		ENST00000540651.5_1_1:228286285-228286639:+|nuORF	ENST00000540651.5_1_1:228286285-228286639:+|nuORF	ENST00000540651.5_1_1:228286285-228286639:+|nuORF	MSMS	A375_MHC_IP_R2	2	433.285400390625	2	433.219395	864.424236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.45	1	133.62	133.12	134.12	0.16487								0	0	0	0.16876	1	52499	52499		2.5775	0	1				49302	13273	35857	36145	48188	48188					-0.013399067597219982
SLGHSHGMHP	10	Unmodified	_SLGHSHGMHP_					0	0	0			REV__ENST00000526586.6_1_16:2012350-2012557:-|nuORF	REV__ENST00000526586.6_1_16:2012350-2012557:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	530.7093505859375	2	530.243075	1058.4716	-0.51979	-0.00027561	0.14293	7.5785E-05	-0.37686	-0.00019983	530.2430588792586	102.11	0.9597	102.11	101.7	102.66	0					33	18	2	0	0	0	0.53946	1	37558	37558		25.399	4.9457	1	6215300	+		49303	25775	35858	36146	48189	48189					-0.055299955510463406
SLGHSHGMHP	10	Unmodified	_SLGHSHGMHP_					0	0	0			REV__ENST00000526586.6_1_16:2012350-2012557:-|nuORF	REV__ENST00000526586.6_1_16:2012350-2012557:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	530.2080078125	2	530.243075	1058.4716	-0.50563	-0.00026811	-0.0092923	-4.9272E-06	-0.51493	-0.00027304	530.2430942689098	101.38	0.76208	102.14	101.75	102.51	0.76428					33	14	3	0	0	0	0.53946	2	38370	38370;38389		25.399	25.399	1	7576200	+		49304	25775	35858	36146	48190;48191	48190					-0.055299955510463406
SLGHSHGMHP	10	Unmodified	_SLGHSHGMHP_					0	0	0			REV__ENST00000526586.6_1_16:2012350-2012557:-|nuORF	REV__ENST00000526586.6_1_16:2012350-2012557:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	530.243075	1058.4716	-0.50563	-0.00026811	-0.0092923	-4.9272E-06	-0.51493	-0.00027304	530.2430942689098	101.38	0.76208	102.14	101.75	102.51	0.76428	0.017037	-7.4389E-05	NaN	25.399	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7576200	+		49305	25775	35858	36146							-0.055299955510463406
SLGIIRRIL	9	Unmodified	_SLGIIRRIL_					0	0	0			REV__ENSG00000179941|ENST00000650064|BBS10	REV__ENSG00000179941|ENST00000650064|BBS10	MULTI-SECPEP	A375_MHC_IP_R2	2	521.2500610351562	2	520.850576	1039.6866	-0.65301	-0.00034012	-0.43358	-0.00022583	-1.0866	-0.00056595	520.8504017076945	67.2	0.45544	67.936	67.75	68.205	0.73631					14	8	2	0	0	0	0.74412	1	25466	25466		3.2813	0	1	1788100	+		49306	21590	35859	36147	48192	48192					0.16834294256227622
SLGIMRRV	8	Unmodified	_SLGIMRRV_					0	0	0		ENSG00000072080|ENST00000168148|SPP2	ENSG00000072080|ENST00000168148|SPP2	ENSG00000072080|ENST00000168148|SPP2	MSMS	A375_MHC_IP_R1	1	466.1777648925781	2	466.278929	930.543305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.91	1	105.91	105.41	106.41	0								0	0	0	0.16876	1	38879	38879		5.2307	0	1				49307	1528	35860	36148	48193	48193					0.07525543873487095
SLGIMRRV	8	Unmodified	_SLGIMRRV_					0	0	0		ENSG00000072080|ENST00000168148|SPP2	ENSG00000072080|ENST00000168148|SPP2	ENSG00000072080|ENST00000168148|SPP2	MSMS	A375_MHC_IP_R2	2	466.17718505859375	2	466.278929	930.543305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105	1	105.76	105.26	106.26	0.76308								0	0	0	0.16876	1	39718	39718		5.2307	0	1				49308	1528	35860	36148	48194	48194					0.07525543873487095
SLGIRQAAQ	9	Unmodified	_SLGIRQAAQ_					0	0	0			REV__ENSG00000133639|ENST00000256015|BTG1	REV__ENSG00000133639|ENST00000256015|BTG1	MULTI-MSMS	A375_MHC_IP_R2	2	472.6691589355469	2	472.269616	942.524678	-0.36844	-0.000174	-0.04294	-2.0279E-05	-0.41138	-0.00019428	472.26956050665984	113.7	2.7925	114.41	113.62	116.41	0.70984					135	54	3	0	0	0	0.70886	1	42731	42731		6.2058	0	1	15090000	+		49309	18725	35861	36149	48195	48195					0.05111705503270514
SLGISIMIKKL	11	Unmodified	_SLGISIMIKKL_					0	0	0		GRIA1|p.P521L|1|0.39|ENSG00000155511|chr5:153705806-153705806|C/T|missense_variant	GRIA1|p.P521L|1|0.39|ENSG00000155511|chr5:153705806-153705806|C/T|missense_variant	GRIA1|p.P521L|1|0.39|ENSG00000155511|chr5:153705806-153705806|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	401.6120300292969	3	401.589548	1201.74682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.528	1	37.528	37.028	38.028	0								0	0	0	0.16258	1	12659	12659		2.4348	0	1				49310	14080	35862	36150	48196	48196					0.15401223804451547
SLGKIFAL	8	Unmodified	_SLGKIFAL_					0	0	0		ENST00000489483.5_1_3:48665668-48668656:-|nuORF;nc|ENSG00000225697|Q9BXS9-6|SLC26A6;nc|ENSG00000225697|Q9BXS9-5|SLC26A6;nc|ENSG00000225697|Q9BXS9-7|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;ENSG00000225697|ENST00000395550|SLC26A6;ENST00000485361.1_1_3:48668404-48668690:-|nuORF;ENST00000496469.1_1_3:48667303-48668690:-|nuORF	ENST00000489483.5_1_3:48665668-48668656:-|nuORF	ENST00000489483.5_1_3:48665668-48668656:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	425.16558837890625	2	424.765646	847.516739	0.13456	5.7157E-05	0.042179	1.7916E-05	0.17674	7.5073E-05	424.765595074894	92.756	0.61015	92.756	92.515	93.125	0					25	11	3	0	0	0	0.23546	1	34092	34092		85.272	21.036	1	3445400			49311	9699	35863	36151	48197	48197					0.08688178253805745
SLGKIFAL	8	Unmodified	_SLGKIFAL_					0	0	0		ENST00000489483.5_1_3:48665668-48668656:-|nuORF;nc|ENSG00000225697|Q9BXS9-6|SLC26A6;nc|ENSG00000225697|Q9BXS9-5|SLC26A6;nc|ENSG00000225697|Q9BXS9-7|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;ENSG00000225697|ENST00000395550|SLC26A6;ENST00000485361.1_1_3:48668404-48668690:-|nuORF;ENST00000496469.1_1_3:48667303-48668690:-|nuORF	ENST00000489483.5_1_3:48665668-48668656:-|nuORF	ENST00000489483.5_1_3:48665668-48668656:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	425.6440734863281	2	424.765646	847.516739	-0.072404	-3.0755E-05	-0.13523	-5.744E-05	-0.20763	-8.8194E-05	424.7654946113032	91.752	0.76064	92.486	92.222	92.983	0.73451					24	14	2	0	0	0	0.69557	1	34873	34873		36.127	3.8215	1	3000800			49312	9699	35863	36151	48198	48198					0.08688178253805745
SLGKIYNSRV	10	Unmodified	_SLGKIYNSRV_					0	0	0		ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	MULTI-SECPEP	A375_MHC_IP_R2	2	568.7086791992188	2	568.824755	1135.63496	-0.59214	-0.00033683	-1.0982	-0.0006247	-1.6904	-0.00096153	568.8240651140767	51.65	0.61024	52.402	52.118	52.729	0.75225					31	11	4	0	0	0	0.91556	1	19559	19559		3.2813	0	1	11010000			49313	6597	35864	36152	48199	48199					0.07256505771647426
SLGKLLCEV	9	Unmodified	_SLGKLLCEV_					0	0	0		ENSG00000089692|ENST00000203629|LAG3;ENST00000538079.1_1_12:6882155-6887174:+|nuORF	ENSG00000089692|ENST00000203629|LAG3	ENSG00000089692|ENST00000203629|LAG3	MULTI-SECPEP	A375_MHC_IP_R1	1	481.6729431152344	2	481.272978	960.531403	-0.3158	-0.00015199	-0.42329	-0.00020372	-0.7391	-0.00035571	481.2727707892617	72.845	0.71089	72.845	72.625	73.336	0					28	13	3	0	0	0	0.04038	1	26537	26537		66.457	28.483	1	2501700			49314	1932	35865	36153	48200	48200					0.049558823396409935
SLGKLLCEV	9	Unmodified	_SLGKLLCEV_					0	0	0		ENSG00000089692|ENST00000203629|LAG3;ENST00000538079.1_1_12:6882155-6887174:+|nuORF	ENSG00000089692|ENST00000203629|LAG3	ENSG00000089692|ENST00000203629|LAG3	MULTI-MSMS	A375_MHC_IP_R2	2	481.6723327636719	2	481.272978	960.531403	-0.8161	-0.00039277	-0.50503	-0.00024306	-1.3211	-0.00063583	481.27267304309504	71.858	1.0135	72.593	72.364	73.377	0.73421					29	19	2	0	0	0	0.04447	1	27309	27309		66.457	7.0883	1	3672800			49315	1932	35865	36153	48201	48201					0.049558823396409935
SLGKVFGV	8	Unmodified	_SLGKVFGV_					0	0	0		ENSG00000197299|ENST00000355112|BLM;ENST00000558825.5_1_15:91337395-91358506:+|nuORF	ENSG00000197299|ENST00000355112|BLM	ENSG00000197299|ENST00000355112|BLM	MULTI-SECPEP	A375_MHC_IP_R2	2	404.1421813964844	2	403.742171	805.469789	-0.1322	-5.3374E-05	0.39929	0.00016121	0.26709	0.00010784	403.7422332909274	66.277	1.0717	67.013	66.729	67.801	0.73631					36	20	3	0	0	0	0.36486	1	25101	25101		71.134	35.089	1	9187700			49316	9142	35866	36154	48202	48202					0.05927318702674711
SLGLDLPMEN	10	Unmodified	_SLGLDLPMEN_					0	0	0		ENST00000494941.1_1_10:100173883-100174802:-|nuORF	ENST00000494941.1_1_10:100173883-100174802:-|nuORF	ENST00000494941.1_1_10:100173883-100174802:-|nuORF	MSMS	A375_MHC_IP_R2	2	544.7160034179688	2	544.768257	1087.52196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.696	1	52.449	51.949	52.949	0.75225								0	0	0	0.14601	1	19463	19463		25.399	2.663	1				49317	12698	35867	36155	48203	48203					-0.01829930736539609
SLGLEIRRQRR	11	Unmodified	_SLGLEIRRQRR_					0	0	0		ENST00000539783.5_2_2:172290933-172291600:+|nuORF	ENST00000539783.5_2_2:172290933-172291600:+|nuORF	ENST00000539783.5_2_2:172290933-172291600:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	692.8217163085938	2	692.418208	1382.82186	-0.97254	-0.00067341	2.2836	0.0015812	1.311	0.00090779	692.4199661192902	142.47	1.2155	142.47	141.37	142.59	0					32	23	2	0	0	0	0.73807	1	54650	54650		2.9952	0.26005	1	3369700			49318	13266	35868	36156	48204	48204					0.14576542379882085
SLGLFKLRHL	10	Unmodified	_SLGLFKLRHL_					0	0	0			REV__ENSG00000124194|ENST00000342560|GDAP1L1	REV__ENSG00000124194|ENST00000342560|GDAP1L1	MULTI-MSMS	A375_MHC_IP_R2	2	593.2705078125	2	592.369133	1182.72371	-0.51169	-0.00030311	0.35222	0.00020865	-0.15947	-9.4465E-05	592.3690978018745	48.298	0.50312	49.055	48.779	49.282	0.75737					20	9	3	0	0	0	0.72378	1	18136	18136		1.6526	0	1	5333400	+		49319	18280	35869	36157	48205	48205					0.13965965802003666
SLGLGDLRVP	10	Unmodified	_SLGLGDLRVP_					0	0	0		ENSG00000173302|ENST00000309926|GPR148	ENSG00000173302|ENST00000309926|GPR148	ENSG00000173302|ENST00000309926|GPR148	MULTI-SECPEP	A375_MHC_IP_R2	2	513.6373291015625	2	513.800749	1025.58694	-0.97254	-0.00049969	0.0088182	4.5308E-06	-0.96372	-0.00049516	513.8007415788512	34.954	0.50487	35.718	35.475	35.98	0.76338					14	9	2	0	0	0	0.90853	1	12573	12573		6.7232	0	1	2104400			49320	7786	35870	36158	48206	48206					0.07517431851601941
SLGLGESLYI	10	Unmodified	_SLGLGESLYI_					0	0	0		nc|ENSG00000062524|P29376-2|LTK;nc|ENSG00000062524|P29376-3|LTK;ENST00000563518.5_1_15:41799676-41805922:-|nuORF;nc|ENSG00000062524|P29376-5|LTK;nc|ENSG00000062524|P29376-4|LTK;ENSG00000062524|ENST00000263800|LTK	nc|ENSG00000062524|P29376-2|LTK	nc|ENSG00000062524|P29376-2|LTK	MULTI-SECPEP	A375_MHC_IP_R1	1	526.6524658203125	2	526.28714	1050.55973	-0.38834	-0.00020438	-0.16315	-8.5862E-05	-0.55148	-0.00029024	526.286977435258	72.777	0.86308	72.777	72.372	73.235	0					34	16	3	0	0	0	0.11184	1	26530	26530		68.081	2.607	1	8953400			49321	1330	35871	36159	48207	48207					0.03646903520575506
SLGLIRIMSQ	10	Unmodified	_SLGLIRIMSQ_					0	0	0			REV__ENSG00000112249|ENST00000369162|ASCC3	REV__ENSG00000112249|ENST00000369162|ASCC3	MULTI-SECPEP	A375_MHC_IP_R1	1	373.480712890625	3	373.218115	1116.63251	0.28549	0.00010655	-0.12318	-4.5974E-05	0.16231	6.0578E-05	373.5523566213132	50.382	0.20456	50.382	50.254	50.459	0					5	3	2	0	0	0	0.94755	1	17864	17864		0.094841	0	1	387050	+		49322	17721	35872	36160	48208	48208					0.07886334042336784
SLGLNKTKLF	10	Unmodified	_SLGLNKTKLF_					0	0	0			REV__ENST00000468963.1_1_9:139301473-139302406:-|nuORF	REV__ENST00000468963.1_1_9:139301473-139302406:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	561.2398681640625	2	560.839874	1119.66519	-0.3794	-0.00021279	0.010658	5.9773E-06	-0.36875	-0.00020681	560.8396930379143	70.979	0.30812	70.979	70.8	71.108	0					9	5	2	0	0	0	0.79457	1	25818	25818		26.268	7.895	1	1501700	+		49323	20614	35873	36161	48209	48209					0.11014864436810967
SLGLNKTKLF	10	Unmodified	_SLGLNKTKLF_					0	0	0			REV__ENST00000468963.1_1_9:139301473-139302406:-|nuORF	REV__ENST00000468963.1_1_9:139301473-139302406:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	560.839874	1119.66519	-0.55207	-0.00030962	-0.057118	-3.2034E-05	-0.60919	-0.00034166	560.8396941679815	70.07	0.30379	70.805	70.642	70.946	0.73421	-0.087418	-2.6091E-05	NaN	15.248	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1289500	+		49324	20614	35873	36161							0.11014864436810967
SLGLPENHIVF	11	Unmodified	_SLGLPENHIVF_					0	0	0		nc|ENSG00000148346|P80188-2|LCN2;ENSG00000148346|ENST00000277480|LCN2;ENST00000470902.5_1_9:130912815-130915395:+|nuORF;ENST00000488391.5_1_9:130913785-130915395:+|nuORF	nc|ENSG00000148346|P80188-2|LCN2	nc|ENSG00000148346|P80188-2|LCN2	MULTI-MSMS	A375_MHC_IP_R2	2	409.62420654296875	3	409.224034	1224.65027	-0.20038	-8.1999E-05	0.96304	0.0003941	0.76266	0.0003121	409.224300581203	33.192	0.61181	33.945	33.584	34.196	0.75225					24	11	3	0	0	0	0.72649	1	11893	11893		6.6235	2.5068	1	3348800			49325	5736	35874	36162	48210	48210					0.04693372568817722
SLGLPSTGTL	10	Unmodified	_SLGLPSTGTL_					0	0	0		nc|ENSG00000186583|Q76KD6-2|SPATC1;SPATC1|p.A441Pfs*45|1|0.21|ENSG00000186583|chr8:144041245-144041245|G/-|frameshift_variant;ENSG00000186583|ENST00000377470|SPATC1	nc|ENSG00000186583|Q76KD6-2|SPATC1	nc|ENSG00000186583|Q76KD6-2|SPATC1	MULTI-MSMS	A375_MHC_IP_R1	1	473.65911865234375	2	473.266207	944.517862	-0.24906	-0.00011787	1.1501	0.00054431	0.90105	0.00042644	473.266795650623	72.061	0.55684	72.061	71.866	72.423	0					20	10	3	0	0	0	0.36703	1	26165	26165		36.127	1.7253	1	5359100			49326	8762	35875	36163	48211	48211					0.04338347832049294
SLGLSMPADPC	11	Unmodified	_SLGLSMPADPC_					0	0	0		ZNF839|p.F398Sfs*36|1|0.24|ENSG00000022976|chr14:102335715-102335715|T/-|frameshift_variant;nc|ENSG00000022976|A8K0R7|ZNF839;nc|ENSG00000022976|A8K0R7-2|ZNF839;ENSG00000022976|ENST00000442396|ZNF839	ZNF839|p.F398Sfs*36|1|0.24|ENSG00000022976|chr14:102335715-102335715|T/-|frameshift_variant	ZNF839|p.F398Sfs*36|1|0.24|ENSG00000022976|chr14:102335715-102335715|T/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	545.6915893554688	2	545.74901	1089.48347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.352	1	45.121	44.621	45.621	0.7691								0	0	0	0.14837	1	16551	16551		21.537	5.3879	1				49327	1070	35876	36164	48212	48212					-0.05769559642726563
SLGLSNKEQSL	11	Unmodified	_SLGLSNKEQSL_					0	0	0		ENST00000432272.6_1_X:1874636-1874777:+|nuORF	ENST00000432272.6_1_X:1874636-1874777:+|nuORF	ENST00000432272.6_1_X:1874636-1874777:+|nuORF	MSMS	A375_MHC_IP_R1	1	392.6082458496094	3	392.547065	1174.61937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.142	1	46.142	45.642	46.642	0								0	0	0	0.14837	1	16174	16174		12.856	3.6122	1				49328	11875	35877	36165	48213	48213					0.039041744639462195
SLGLSRPQPV	10	Unmodified	_SLGLSRPQPV_					0	0	0			REV__ENST00000560780.1_2_15:44964301-44966556:-|nuORF	REV__ENST00000560780.1_2_15:44964301-44966556:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	528.093505859375	2	527.306198	1052.59784	-0.79255	-0.00041792	-0.24719	-0.00013035	-1.0397	-0.00054826	527.3061212584804	61.25	0.60496	61.995	61.618	62.223	0.74503					22	11	3	0	0	0	0.74754	1	23138	23138		12.241	0	1	5086800	+		49329	26172	35878	36166	48214	48214					0.07364834225904815
SLGLWLPT	8	Unmodified	_SLGLWLPT_					0	0	0			REV__ENST00000196061.4_1_1:12034968-12035118:+|nuORF	REV__ENST00000196061.4_1_1:12034968-12035118:+|nuORF	MSMS	A375_MHC_IP_R1	1	443.6795959472656	2	443.755278	885.496004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.181	1	65.181	64.681	65.681	0								0	0	0	0.16876	1	23595	23595		13.508	0	1		+		49330	23019	35879	36167	48215	48215					0.04867587874127821
SLGLWLPT	8	Unmodified	_SLGLWLPT_					0	0	0			REV__ENST00000196061.4_1_1:12034968-12035118:+|nuORF	REV__ENST00000196061.4_1_1:12034968-12035118:+|nuORF	MSMS	A375_MHC_IP_R2	2	443.67926025390625	2	443.755278	885.496004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.136	1	64.876	64.376	65.376	0.74022								0	0	0	0.16876	1	24320	24320		13.508	0	1		+		49331	23019	35879	36167	48216	48216					0.04867587874127821
SLGMGGMMQSG	11	Unmodified	_SLGMGGMMQSG_					0	0	0			REV__ENST00000502632.5_1_5:179042549-179043984:-|nuORF	REV__ENST00000502632.5_1_5:179042549-179043984:-|nuORF	MSMS	A375_MHC_IP_R2	2	528.197509765625	2	528.219562	1054.42457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.938	1	45.708	45.208	46.208	0.7691								0	0	0	0.15694	1	16786	16786		16.149	1.3108	1		+		49332	18407	35880	36168	48217	48217					-0.10046359208672584
SLGNPDFIE	9	Unmodified	_SLGNPDFIE_					0	0	0		ENSG00000198874|ENST00000359626|TYW1;nc|ENSG00000277149|Q6NUM6-2|TYW1B;ENSG00000277149|ENST00000620995|TYW1B	ENSG00000198874|ENST00000359626|TYW1	ENSG00000198874|ENST00000359626|TYW1	MSMS	A375_MHC_IP_R1	1	496.15576171875	2	496.24019	990.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.167	1	65.167	64.667	65.667	0								0	0	0	0.15486	1	23589	23589		11.64	1.4569	1				49333	9356	35881	36169	48218	48218					-0.029788155817186635
SLGPDVPEL	9	Unmodified	_SLGPDVPEL_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-MSMS	A375_MHC_IP_R2	2	927.5457763671875	1	926.482939	925.475663	-0.3054	-0.00028295	0.85803	0.00079495	0.55263	0.000512	926.4831470338014	96.299	0.60878	97.049	96.754	97.363	0.75044					20	11	3	0	0	0	0.29981	1	36532	36532		30.637	5.2372	1	3029200			49334	1441	35882	36170	48219	48219					0.009943724236563867
SLGPDVPEL	9	Unmodified	_SLGPDVPEL_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-MATCH	A375_MHC_IP_R1	1		1	926.482939	925.475663	0.036416	3.3739E-05	0.29895	0.00027697	0.33536	0.00031071	926.4829495073149	97.01	0.50751	97.01	96.73	97.238	0	-0.019487	-0.00018633	NaN	30.637	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3573100			49335	1441	35882	36170							0.009943724236563867
SLGPLDVFVD	10	Unmodified	_SLGPLDVFVD_					0	0	0		ENST00000378509.8_1_7:133975980-133976244:-|nuORF	ENST00000378509.8_1_7:133975980-133976244:-|nuORF	ENST00000378509.8_1_7:133975980-133976244:-|nuORF	MSMS	A375_MHC_IP_R1	1	531.1864624023438	2	531.279315	1060.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.47	1	128.47	127.97	128.97	0								0	0	0	0.15067	1	49338	49338		25.399	10.561	1				49336	11315	35883	36171	48220	48220					0.01622617003522464
SLGPRLSL	8	Unmodified	_SLGPRLSL_					0	0	0		ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-3|PREX1;nc|ENSG00000124126|Q8TCU6-2|PREX1	ENSG00000124126|ENST00000371941|PREX1	ENSG00000124126|ENST00000371941|PREX1	MULTI-SECPEP	A375_MHC_IP_R1	1	422.15850830078125	2	421.758352	841.502152	0.01478	6.2336E-06	0.1284	5.4155E-05	0.14318	6.0388E-05	421.7582811691828	59.402	0.50784	59.402	59.143	59.651	0					19	9	3	0	0	0	0.67594	1	21379	21379		32.037	0	1	1825400			49337	3870	35884	36172	48221	48221					0.0750610610567719
SLGPSIPRS	9	Unmodified	_SLGPSIPRS_					0	0	0			REV__ENSG00000108091|ENST00000263102|CCDC6	REV__ENSG00000108091|ENST00000263102|CCDC6	MULTI-MSMS	A375_MHC_IP_R2	2	457.65850830078125	2	457.258717	912.50288	-0.41028	-0.0001876	-0.11988	-5.4815E-05	-0.53015	-0.00024242	457.25867550697245	36.053	0.51095	36.817	36.537	37.048	0.76338					14	9	2	0	0	0	0.17338	1	13136	13136		39.95	3.8227	1	3966200	+		49338	17514	35885	36173	48222	48222					0.043129007547122455
SLGPSIPRS	9	Unmodified	_SLGPSIPRS_					0	0	0			REV__ENSG00000108091|ENST00000263102|CCDC6	REV__ENSG00000108091|ENST00000263102|CCDC6	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	457.258717	912.50288	-0.39858	-0.00018225	0.38315	0.0001752	-0.015435	-7.0576E-06	457.2588737847903	36.939	0.50411	36.939	36.644	37.148	0	0.061256	0.00022953	NaN	39.95	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2444200	+		49339	17514	35885	36173							0.043129007547122455
SLGPVKATPRR	11	Unmodified	_SLGPVKATPRR_					0	0	0			REV__ENST00000426194.1_1_18:30349772-30353294:+|nuORF	REV__ENST00000426194.1_1_18:30349772-30353294:+|nuORF	MSMS	A375_MHC_IP_R2	2	591.284423828125	2	591.359296	1180.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.24	1	117.9	117.4	118.4	0.65962								0	0	0	0.16258	1	44353	44353		5.2969	0	1		+		49340	24646	35886	36174	48223	48223					0.1209158979120275
SLGPVSRTP	9	Unmodified	_SLGPVSRTP_					0	0	0			REV__ENST00000395590.5_1_22:51220772-51221997:-|nuORF	REV__ENST00000395590.5_1_22:51220772-51221997:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	457.6586608886719	2	457.258717	912.50288	-0.39858	-0.00018225	0.38315	0.0001752	-0.015435	-7.0576E-06	457.2588737847903	36.939	0.50411	36.939	36.644	37.148	0					15	9	2	0	0	0	0.34064	1	12445	12445		27.629	1.3607	1	2444200	+		49341	24325	35887	36175	48224	48224					0.04312900754723614
SLGPVSVWRIL	11	Unmodified	_SLGPVSVWRIL_					0	0	0		SLC6A14|p.I586Ffs*12|1|0.13|ENSG00000268104|chrX:116457749-116457749|A/-|frameshift_variant;ENSG00000268104|ENST00000598581|SLC6A14	SLC6A14|p.I586Ffs*12|1|0.13|ENSG00000268104|chrX:116457749-116457749|A/-|frameshift_variant	SLC6A14|p.I586Ffs*12|1|0.13|ENSG00000268104|chrX:116457749-116457749|A/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	613.9638061523438	2	613.866423	1225.71829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.88	1	122.32	121.82	122.82	0.44488								0	0	0	0.16191	1	46667	46667		8.7454	0.58988	1				49342	9971	35888	36176	48225	48225					0.11446242219517444
SLGQRVLL	8	Unmodified	_SLGQRVLL_					0	0	0		nc|ENSG00000178149|Q5D0E6-3|DALRD3;ENST00000498794.1_1_3:49055454-49055997:-|nuORF;ENST00000484831.5_1_3:49054806-49055997:-|nuORF;ENST00000460505.5_1_3:49053470-49055997:-|nuORF;nc|ENSG00000178149|Q5D0E6-2|DALRD3;ENSG00000178149|ENST00000341949|DALRD3	nc|ENSG00000178149|Q5D0E6-3|DALRD3	nc|ENSG00000178149|Q5D0E6-3|DALRD3	MULTI-MSMS	A375_MHC_IP_R1	1	443.6792297363281	2	443.279452	884.544351	0.31434	0.00013934	-0.10018	-4.4408E-05	0.21416	9.4931E-05	443.2793722238941	69.207	1.4176	69.207	68.717	70.135	0					41	27	3	0	0	0	0.68328	1	25097	25097		39.957	0	1	3489400			49343	8138	35889	36177	48226	48226					0.09746081514037996
SLGQRVLL	8	Unmodified	_SLGQRVLL_					0	0	0		nc|ENSG00000178149|Q5D0E6-3|DALRD3;ENST00000498794.1_1_3:49055454-49055997:-|nuORF;ENST00000484831.5_1_3:49054806-49055997:-|nuORF;ENST00000460505.5_1_3:49053470-49055997:-|nuORF;nc|ENSG00000178149|Q5D0E6-2|DALRD3;ENSG00000178149|ENST00000341949|DALRD3	nc|ENSG00000178149|Q5D0E6-3|DALRD3	nc|ENSG00000178149|Q5D0E6-3|DALRD3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	443.279452	884.544351	0.31434	0.00013934	-0.10018	-4.4408E-05	0.21416	9.4931E-05	443.2793722238941	69.207	1.4176	69.207	68.717	70.135	0	0	0	NaN	39.957	41	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3489400			49344	8138	35889	36177							0.09746081514037996
SLGRGAQGLF	10	Unmodified	_SLGRGAQGLF_					0	0	0		ENST00000279036.11_3_20:44054315-44054561:+|nuORF	ENST00000279036.11_3_20:44054315-44054561:+|nuORF	ENST00000279036.11_3_20:44054315-44054561:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	503.3085021972656	2	503.277441	1004.54033	-0.27389	-0.00013784	-0.6315	-0.00031782	-0.9054	-0.00045566	503.27714638694164	72.758	0.50678	72.758	72.524	73.031	0					9	6	2	0	0	0	0.70496	1	26512	26512		10.074	0.6908	1	791210			49345	10413	35890	36178	48227	48227					0.038239920203295696
SLGRLGLTTF	10	Unmodified	_SLGRLGLTTF_					0	0	0			REV__nc|ENSG00000168594|Q9UKF5-2|ADAM29	REV__nc|ENSG00000168594|Q9UKF5-2|ADAM29	MULTI-SECPEP	A375_MHC_IP_R1	1	532.6797485351562	2	532.808574	1063.60259	-0.42639	-0.00022719	-0.25884	-0.00013791	-0.68523	-0.0003651	532.8084140347902	42.764	0.40537	42.764	42.587	42.993	0					12	7	2	0	0	0	0.70528	1	14788	14788		10.8	2.644	1	3433800	+		49346	20869	35891	36179	48228	48228					0.07333718368636255
SLGRQISQV	9	Unmodified	_SLGRQISQV_					0	0	0		GIT2|p.H44Q|1|0.24|ENSG00000139436|chr12:109991681-109991681|A/T|missense_variant	GIT2|p.H44Q|1|0.24|ENSG00000139436|chr12:109991681-109991681|A/T|missense_variant	GIT2|p.H44Q|1|0.24|ENSG00000139436|chr12:109991681-109991681|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	494.6822509765625	2	494.282723	986.550893	-0.20727	-0.00010245	-0.70428	-0.00034811	-0.91155	-0.00045057	494.2823071764799	35.871	0.56021	35.871	35.573	36.133	0					18	10	3	0	0	0	0.16764	1	11982	11982		60.074	8.4441	1	2645000			49347	14049	35892	36180	48229	48229					0.05707974674771776
SLGRQISQV	9	Unmodified	_SLGRQISQV_					0	0	0		GIT2|p.H44Q|1|0.24|ENSG00000139436|chr12:109991681-109991681|A/T|missense_variant	GIT2|p.H44Q|1|0.24|ENSG00000139436|chr12:109991681-109991681|A/T|missense_variant	GIT2|p.H44Q|1|0.24|ENSG00000139436|chr12:109991681-109991681|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	494.6822814941406	2	494.282723	986.550893	-0.7094	-0.00035064	-0.45461	-0.00022471	-1.164	-0.00057535	494.28236749089945	34.989	0.75755	35.752	35.525	36.283	0.76338					17	14	2	0	0	0	0.16764	1	12660	12660		43.772	0	1	2006500			49348	14049	35892	36180	48230	48230					0.05707974674771776
SLGSDEDHV	9	Unmodified	_SLGSDEDHV_					0	0	0			REV__nc|ENSG00000176225|Q86VV8-3|RTTN	REV__nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-SECPEP	A375_MHC_IP_R2	2	479.1917724609375	2	479.709254	957.403954	-0.63667	-0.00030542	-0.87221	-0.00041841	-1.5089	-0.00072382	479.70870221696504	81.548	0.60577	82.291	82.029	82.634	0.74293					19	11	3	0	0	0	0.75466	1	31100	31100		7.9102	7.9102	1	1821500	+		49349	21396	35893	36181	48231	48231					-0.07645167000850961
SLGSFPQHVQ	10	Unmodified	_SLGSFPQHVQ_					0	0	0		DSC1|p.P150S|1|0.32|ENSG00000134765|chr18:31156066-31156066|G/A|missense_variant	DSC1|p.P150S|1|0.32|ENSG00000134765|chr18:31156066-31156066|G/A|missense_variant	DSC1|p.P150S|1|0.32|ENSG00000134765|chr18:31156066-31156066|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	550.1790161132812	2	550.28018	1098.54581	-0.57134	-0.0003144	0.94078	0.00051769	0.36943	0.00020329	550.2800219091628	55.101	0.30389	55.101	54.873	55.177	0					8	5	2	0	0	0	0.66275	1	19686	19686		29.841	0	1	2485600			49350	801	35894	36182	48232	48232					0.0004767081213685742
SLGSFYAQV	9	Unmodified	_SLGSFYAQV_					0	0	0		nc|ENSG00000165917|Q13702-2|RAPSN;ENSG00000165917|ENST00000298854|RAPSN	nc|ENSG00000165917|Q13702-2|RAPSN	nc|ENSG00000165917|Q13702-2|RAPSN	MSMS	A375_MHC_IP_R2	2	486.18145751953125	2	486.245275	970.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.043	1	89.774	89.274	90.274	0.7318								0	0	0	0.14905	1	33889	33889		23.148	5.0134	1				49351	7004	35895	36183	48233	48233					-0.010422078564715775
SLGSGSLQNDW	11	Unmodified	_SLGSGSLQNDW_					0	0	0		ENSG00000079112|ENST00000027335|CDH17	ENSG00000079112|ENST00000027335|CDH17	ENSG00000079112|ENST00000027335|CDH17	MULTI-MSMS	A375_MHC_IP_R2	2	582.1687622070312	2	582.27001	1162.52547	-0.63828	-0.00037165	-1.2332	-0.00071805	-1.8715	-0.0010897	582.2691625483753	49.75	0.56013	50.504	50.244	50.804	0.75406					14	10	2	0	0	0	0.57844	1	18690	18690		24.991	3.2443	1	2289800			49352	1686	35896	36184	48234	48234					-0.04929544638321204
SLGSISRFAKK	11	Unmodified	_SLGSISRFAKK_					0	0	0			REV__ENSG00000176222|ENST00000587539|ZNF404	REV__ENSG00000176222|ENST00000587539|ZNF404	MULTI-SECPEP	A375_MHC_IP_R1	1	597.2246704101562	2	597.35368	1192.69281	-0.65322	-0.0003902	-1.5631	-0.00093373	-2.2163	-0.0013239	597.3512390590103	132.93	1.6289	132.93	132.08	133.71	0					60	31	3	0	0	0	0.99647	1	51108	51108		6.6304	0.89852	1	6637900	+		49353	21395	35897	36185	48235	48235					0.10416767697074647
SLGSLRPYP	9	Unmodified	_SLGSLRPYP_					0	0	0		ENSG00000111676|ENST00000396684|ATN1;ATN1|p.Y875Lfs*5|1|0.41|ENSG00000111676|chr12:6938579-6938580|-/C|frameshift_variant	ENSG00000111676|ENST00000396684|ATN1	ENSG00000111676|ENST00000396684|ATN1	MULTI-SECPEP	A375_MHC_IP_R1	1	989.9407958984375	1	989.541457	988.53418	0.22169	0.00021938	-0.85489	-0.00084595	-0.6332	-0.00062657	989.5405322357713	61.795	0.56207	61.795	61.585	62.148	0					17	10	2	0	0	0	0.55359	1	22399	22399		28.487	3.0875	1	2288900			49354	3015	35898	36186	48236	48236					0.03945473788792242
SLGSLRPYP	9	Unmodified	_SLGSLRPYP_					0	0	0		ENSG00000111676|ENST00000396684|ATN1;ATN1|p.Y875Lfs*5|1|0.41|ENSG00000111676|chr12:6938579-6938580|-/C|frameshift_variant	ENSG00000111676|ENST00000396684|ATN1	ENSG00000111676|ENST00000396684|ATN1	MULTI-MATCH	A375_MHC_IP_R2	2		1	989.541457	988.53418	-0.30314	-0.00029997	-0.63539	-0.00062875	-0.93853	-0.00092871	989.5406584538692	60.948	0.65683	61.693	61.515	62.172	0.74503	-0.050959	0.00011547	NaN	28.487	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3466300			49355	3015	35898	36186							0.03945473788792242
SLGSQIDRSW	10	Unmodified	_SLGSQIDRSW_					0	0	0			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MSMS	A375_MHC_IP_R1	1	575.1882934570312	2	574.78837	1147.56219	-0.24075	-0.00013838	-0.0038598	-2.2185E-06	-0.24461	-0.0001406	574.7881668161452	47.314	0.41173	47.314	47.055	47.467	0					11	7	2	0	0	0	0.42311	1	16665	16665		32.786	0	1	2239900	+		49356	22015	35899	36187	48237	48237					-0.005692480217703633
SLGSQIDRSW	10	Unmodified	_SLGSQIDRSW_					0	0	0			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	574.78837	1147.56219	-0.073666	-4.2342E-05	-0.10883	-6.2554E-05	-0.18249	-0.0001049	575.2900659669848	46.546	0.35869	47.311	47.108	47.466	0.76518	-0.0014173	-7.331E-05	NaN	32.786	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2319500	+		49357	22015	35899	36187							-0.005692480217703633
SLGTMQLFF	9	Unmodified	_SLGTMQLFF_					0	0	0		ENST00000460337.5_1_1:213180435-213186753:-|nuORF	ENST00000460337.5_1_1:213180435-213186753:-|nuORF	ENST00000460337.5_1_1:213180435-213186753:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	522.6646118164062	2	522.265153	1042.51575	-0.52561	-0.00027451	-0.68262	-0.00035651	-1.2082	-0.00063102	522.2647827695623	27.292	0.50781	27.971	27.843	28.351	0.67857					17	9	2	0	0	0	0.55359	1	9328	9328		21.747	0	1	7763000			49358	12164	35900	36188	48238	48238					-0.0038040417739466648
SLGVALEV	8	Unmodified	_SLGVALEV_					0	0	0			REV__ENSG00000181004|ENST00000314218|BBS12	REV__ENSG00000181004|ENST00000314218|BBS12	MSMS	A375_MHC_IP_R2	2	394.1578674316406	2	394.231636	786.448719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.913	1	44.682	44.182	45.182	0.7691								0	0	0	0.15432	1	16377	16377		46.921	0	1		+		49359	21631	35901	36189	48239	48239					0.04695308603140802
SLGVDLELQPV	11	Unmodified	_SLGVDLELQPV_					0	0	0			REV__nc|ENSG00000105227|Q9BXM0-3|PRX	REV__nc|ENSG00000105227|Q9BXM0-3|PRX	MULTI-SECPEP	A375_MHC_IP_R1	1	585.2047729492188	2	585.324254	1168.63395	-0.26759	-0.00015662	-0.6936	-0.00040598	-0.96119	-0.00056261	585.8249367079816	59.316	0.45656	59.316	59.092	59.548	0					25	8	4	0	0	0	0.82939	1	21331	21331		23.79	1.1317	1	6254300	+		49360	17362	35902	36190	48240	48240					0.05638246612079456
SLGVLLFSLAT	11	Unmodified	_SLGVLLFSLAT_					0	0	0		nc|ENSG00000167524|Q96LW2|RSKR;ENSG00000167524|ENST00000301037|RSKR	nc|ENSG00000167524|Q96LW2|RSKR	nc|ENSG00000167524|Q96LW2|RSKR	MULTI-SECPEP	A375_MHC_IP_R2	2	374.30096435546875	3	374.225264	1119.65396	0.10512	3.934E-05	-0.45816	-0.00017146	-0.35304	-0.00013212	374.2250101497052	51.669	0.40646	52.421	52.219	52.626	0.75225					9	7	2	0	0	0	0.99411	1	19502	19502		9.7643	5.2354	1	1258400			49361	7189	35903	36191	48241	48241					0.09892042342721652
SLGVSKRD	8	Unmodified	_SLGVSKRD_					0	0	0		ENST00000530591.5_1_11:126225904-126276042:+|nuORF	ENST00000530591.5_1_11:126225904-126276042:+|nuORF	ENST00000530591.5_1_11:126225904-126276042:+|nuORF	MSMS	A375_MHC_IP_R2	2	431.2880554199219	2	431.243067	860.47158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.31	1	141.35	140.85	141.85	0.04216								0	0	0	0.16876	1	55277	55277		4.756	0	1				49362	13150	35904	36192	48242	48242					0.03576327720622885
SLGWPQAEL	9	Unmodified	_SLGWPQAEL_					0	0	0			REV__ENST00000317271.2_1_7:99816887-99817430:+|nuORF	REV__ENST00000317271.2_1_7:99816887-99817430:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	500.7132873535156	2	500.758549	999.502546	-0.36472	-0.00018264	-0.3815	-0.00019104	-0.74622	-0.00037368	500.7584126948902	40.773	0.40369	40.773	40.609	41.013	0					13	7	3	0	0	0	0.4867	1	14042	14042		20.454	3.5113	1	961680	+		49363	23544	35905	36193	48243	48243					0.002774810348455503
SLGWPQAEL	9	Unmodified	_SLGWPQAEL_					0	0	0			REV__ENST00000317271.2_1_7:99816887-99817430:+|nuORF	REV__ENST00000317271.2_1_7:99816887-99817430:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	500.20306396484375	2	500.758549	999.502546	-0.36472	-0.00018264	-0.3815	-0.00019104	-0.74622	-0.00037368	500.7584126948902	40.773	0.40369	40.773	40.609	41.013	0					13	7	3	0	0	0	0.58271	1	14044	14044		14.838	6.9281	1	961680	+		49364	23544	35905	36193	48244	48244					0.002774810348455503
SLGWRIHF	8	Unmodified	_SLGWRIHF_					0	0	0			REV__KCNK1|p.F174L|1|0.89|ENSG00000135750|chr1:233666759-233666759|T/C|missense_variant	REV__KCNK1|p.F174L|1|0.89|ENSG00000135750|chr1:233666759-233666759|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	508.2027282714844	2	508.277244	1014.53993	-0.31943	-0.00016236	-1.9094	-0.00097051	-2.2288	-0.0011329	508.27639488257773	97.346	0.45358	97.346	97.137	97.59	0					13	8	2	0	0	0	0.96266	1	35832	35832		11.64	7.6959	1	797510	+		49365	26829	35906	36194	48245	48245					0.033246170911411355
SLGWTTAAEKW	11	Unmodified	_SLGWTTAAEKW_					0	0	0			REV__SPATA31E1|p.R310K|1|0.29|ENSG00000177992|chr9:87885416-87885416|G/A|missense_variant	REV__SPATA31E1|p.R310K|1|0.29|ENSG00000177992|chr9:87885416-87885416|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	417.303466796875	3	417.211906	1248.61389	-0.15464	-6.4517E-05	1.0747	0.00044839	0.9201	0.00038388	417.5459851227475	38.293	0.25313	38.293	38.118	38.371	0					5	4	2	0	0	0	0.98591	1	12924	12924		1.2148	0	1	402650	+		49366	28028	35907	36195	48246	48246					-0.0004750432788114267
SLGYAYVNFL	10	Unmodified	_SLGYAYVNFL_					0	0	0		ENSG00000254535|ENST00000421491|PABPC4L	ENSG00000254535|ENST00000421491|PABPC4L	ENSG00000254535|ENST00000421491|PABPC4L	MULTI-SECPEP	A375_MHC_IP_R2	2	382.2926330566406	3	382.865847	1145.57571	-0.38986	-0.00014926	0.78953	0.00030229	0.39968	0.00015302	382.866099949558	26.78	0.61314	27.44	27.212	27.825	0.65992					18	11	2	0	0	0	0.91556	1	9208	9208		1.5923	0	1	16911000			49367	9878	35908	36196	48247	48247					0.008746097574658052
SLGYHHPCGCT	11	Unmodified	_SLGYHHPCGCT_					0	0	0		ENST00000487903.5_1_13:113536381-113537092:+|nuORF	ENST00000487903.5_1_13:113536381-113537092:+|nuORF	ENST00000487903.5_1_13:113536381-113537092:+|nuORF	MSMS	A375_MHC_IP_R1	1	587.6688842773438	2	587.742051	1173.46955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.464	1	36.464	35.964	36.964	0								0	0	0	0.16203	1	12208	12208		8.1555	0.24537	1				49368	12603	35909	36197	48248	48248					-0.11024792351145152
SLHAEYCE	8	Unmodified	_SLHAEYCE_					0	0	0		PRICKLE1|p.Y247H|1|0.45|ENSG00000139174|chr12:42466230-42466230|A/G|missense_variant	PRICKLE1|p.Y247H|1|0.45|ENSG00000139174|chr12:42466230-42466230|A/G|missense_variant	PRICKLE1|p.Y247H|1|0.45|ENSG00000139174|chr12:42466230-42466230|A/G|missense_variant	MSMS	A375_MHC_IP_R1	1	476.15020751953125	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.316	1	48.316	47.816	48.816	0								0	0	0	0.16876	1	17036	17036		18.135	8.7875	1				49369	15225	35910	36198	48249	48249					-0.09679304039025283
SLHAKSRG	8	Unmodified	_SLHAKSRG_					0	0	0		ENST00000368347.8_1_1:155293744-155293912:+|nuORF	ENST00000368347.8_1_1:155293744-155293912:+|nuORF	ENST00000368347.8_1_1:155293744-155293912:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	428.64337158203125	2	428.243401	854.472249	0.097161	4.1609E-05	0.032528	1.393E-05	0.12969	5.5539E-05	428.2433341486278	109.14	1.8296	109.14	108.1	109.93	0					57	35	2	0	0	0	0.7779	1	39970	39970		2.5775	0	1	2201000			49370	11113	35911	36199	48250	48250					0.03919167160336201
SLHATLPAMLC	11	Unmodified	_SLHATLPAMLC_					0	0	0		ENST00000371162.4_1_2:111996244-111996538:-|nuORF	ENST00000371162.4_1_2:111996244-111996538:-|nuORF	ENST00000371162.4_1_2:111996244-111996538:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	385.933837890625	3	386.199955	1155.57804	-0.41047	-0.00015852	1.27	0.00049049	0.85956	0.00033196	386.2006195455541	37.62	0.66512	38.393	38.073	38.738	0.7736					18	12	2	0	0	0	0.84606	1	13734	13734		12.856	0	1	2154700			49371	11169	35912	36200	48251	48251					0.006469988992876097
SLHCHGCFPF	10	Unmodified	_SLHCHGCFPF_					0	0	0			REV__ENST00000476695.1_1_7:69289624-69364285:+|nuORF	REV__ENST00000476695.1_1_7:69289624-69364285:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	574.17529296875	2	574.244229	1146.47391	-0.14838	-8.5206E-05	1.9282	0.0011072	1.7798	0.001022	574.7474044111736	88.332	0.30677	88.332	88.052	88.358	0					6	5	2	0	0	0	0.89109	1	32339	32339		7.2892	0	1	2178600	+		49372	25186	35913	36201	48252	48252					-0.09347283137572049
SLHDAHLL	8	Unmodified	_SLHDAHLL_					0	0	0		ENSG00000182308|ENST00000333141|DCAF4L1	ENSG00000182308|ENST00000333141|DCAF4L1	ENSG00000182308|ENST00000333141|DCAF4L1	MSMS	A375_MHC_IP_R2	2	453.2318115234375	2	453.245609	904.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.97	1	142	141.5	142.5	0.030731								0	0	0	0.16876	1	55512	55512		9.3474	0	1				49373	8398	35914	36202	48253	48253					0.020606315832424116
SLHDAIMIV	9	Oxidation (M)	_SLHDAIM(Oxidation (M))IV_		SLHDAIM(1)IV		SLHDAIM(64)IV	0	0	1		nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	MULTI-SECPEP	A375_MHC_IP_R1	1	508.167724609375	2	507.76806	1013.52157	-0.60859	-0.00030902	-0.19772	-0.0001004	-0.80631	-0.00040942	507.76815953031945	86.3	0.50533	86.3	86.022	86.527	0					22	9	3	0	0	0	0.1277	1	31613	31613		64.236	28.192	1	3480900			49374	4699	35915	36203	48254	48254		246			0.015346943342706254
SLHDAIMIV	9	Oxidation (M)	_SLHDAIM(Oxidation (M))IV_		SLHDAIM(1)IV		SLHDAIM(55)IV	0	0	1		nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	MULTI-SECPEP	A375_MHC_IP_R1	1	508.2313537597656	2	507.76806	1013.52157	-0.37274	-0.00018926	-0.47115	-0.00023924	-0.84389	-0.0004285	507.76784133670833	73.097	1.926	73.097	72.271	74.197	0					77	37	3	0	0	0	0.1277	1	26925	26925		54.774	26.287	1	8559100			49375	4699	35915	36203	48255	48255		246			0.015346943342706254
SLHDAIMIV	9	Oxidation (M)	_SLHDAIM(Oxidation (M))IV_		SLHDAIM(1)IV		SLHDAIM(57)IV	0	0	1		nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	MULTI-SECPEP	A375_MHC_IP_R1	1	508.1679992675781	2	507.76806	1013.52157	-0.17534	-8.903E-05	-0.46063	-0.00023389	-0.63597	-0.00032292	507.7677916914927	71.746	0.75471	71.746	71.465	72.22	0					33	14	3	0	0	0	0.16229	1	26042	26042		57.471	27.247	1	26878000			49376	4699	35915	36203	48256	48256		246			0.015346943342706254
SLHDAIMIV	9	Oxidation (M)	_SLHDAIM(Oxidation (M))IV_		SLHDAIM(1)IV		SLHDAIM(64)IV	0	0	1		nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	MULTI-MSMS	A375_MHC_IP_R2	2	508.23095703125	2	507.76806	1013.52157	-0.86217	-0.00043778	-0.18203	-9.2427E-05	-1.0442	-0.00053021	507.7679421099899	72.473	1.7758	73.209	72.265	74.041	0.73541					84	34	3	0	0	0	0.050162	2	27566	27301;27566		64.236	28.192	1	7521200			49377	4699	35915	36203	48257;48258	48258		246			0.015346943342706254
SLHDAIMIV	9	Oxidation (M)	_SLHDAIM(Oxidation (M))IV_		SLHDAIM(1)IV		SLHDAIM(55)IV	0	0	1		nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	MULTI-SECPEP	A375_MHC_IP_R2	2	508.1681823730469	2	507.76806	1013.52157	-0.5894	-0.00029928	-0.66584	-0.00033809	-1.2552	-0.00063737	507.7677629615638	85.273	0.76372	86.009	85.677	86.441	0.73601					24	14	2	0	0	0	0.1277	1	32411	32411		54.774	18.729	1	3801800			49378	4699	35915	36203	48259	48259		246			0.015346943342706254
SLHDAIMIV	9	Oxidation (M)	_SLHDAIM(Oxidation (M))IV_					0	0	1		nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	507.76806	1013.52157	-0.84356	-0.00042833	-0.078027	-3.962E-05	-0.92159	-0.00046795	507.76797206608245	70.935	1.0125	71.669	71.251	72.264	0.73421	-0.03829	0.00015623	NaN	57.471	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25029000			49379	4699	35915	36203				246			0.015346943342706254
SLHDAIMIV	9	Unmodified	_SLHDAIMIV_					0	0	0		nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	MULTI-MSMS	A375_MHC_IP_R2	2	500.1871032714844	2	499.770603	997.526652	-0.40755	-0.00020368	-0.23799	-0.00011894	-0.64555	-0.00032262	499.77047683216426	85.257	0.91745	85.993	85.626	86.543	0.73601					32	17	2	0	0	0	0.11296	1	32431	32431		48.346	10.195	1	17762000			49380	4699	35915	36204	48260	48260					0.027789981968794564
SLHDLEKTI	9	Unmodified	_SLHDLEKTI_					0	0	0		ENSG00000170464|ENST00000302060|DNAJC18	ENSG00000170464|ENST00000302060|DNAJC18	ENSG00000170464|ENST00000302060|DNAJC18	MULTI-SECPEP	A375_MHC_IP_R1	1	528.6898193359375	2	528.290214	1054.56587	-0.53748	-0.00028394	-0.34777	-0.00018373	-0.88525	-0.00046767	528.2899610206259	99.72	0.50223	99.72	99.422	99.925	0					16	9	2	0	0	0	0.28216	1	36622	36622		49.933	2.1843	1	2459600			49381	7509	35916	36205	48261	48261					0.040774217520947786
SLHDPITTS	9	Unmodified	_SLHDPITTS_					0	0	0			REV__ENSG00000179299|ENST00000381782|NSUN7	REV__ENSG00000179299|ENST00000381782|NSUN7	MULTI-MSMS	A375_MHC_IP_R1	1	487.8982238769531	2	485.745639	969.476725	-0.32304	-0.00015692	-0.505	-0.0002453	-0.82804	-0.00040222	485.7456085659711	76.439	0.70911	76.439	76.067	76.776	0					44	13	5	0	0	0	0.58047	1	27839	27839		15.847	4.2069	1	14274000	+		49382	21554	35917	36206	48262	48262					-0.00923413207442536
SLHDRIYVI	9	Unmodified	_SLHDRIYVI_					0	0	0		nc|ENSG00000117153|Q53G59-2|KLHL12;ENSG00000117153|ENST00000367261|KLHL12	nc|ENSG00000117153|Q53G59-2|KLHL12	nc|ENSG00000117153|Q53G59-2|KLHL12	MULTI-SECPEP	A375_MHC_IP_R1	1	558.7142333984375	2	558.314023	1114.61349	-0.43984	-0.00024557	0.93283	0.00052081	0.49299	0.00027524	558.3147343653792	56.915	0.66236	56.915	56.548	57.211	0					19	12	2	0	0	0	0.39266	1	20397	20397		57.249	26.613	1	2605500			49383	3461	35918	36207	48263	48263					0.06077120742952502
SLHDRIYVI	9	Unmodified	_SLHDRIYVI_					0	0	0		nc|ENSG00000117153|Q53G59-2|KLHL12;ENSG00000117153|ENST00000367261|KLHL12	nc|ENSG00000117153|Q53G59-2|KLHL12	nc|ENSG00000117153|Q53G59-2|KLHL12	MULTI-MSMS	A375_MHC_IP_R2	2	372.9448547363281	3	372.545108	1114.61349	0.27635	0.00010295	-0.12977	-4.8347E-05	0.14657	5.4605E-05	372.54497009766277	55.917	0.50989	56.667	56.438	56.948	0.75015					29	9	4	0	0	0	0.6343	1	21115	21115		12.873	0.63195	1	6608500			49384	3461	35918	36207	48264	48264					0.06077120742952502
SLHDRIYVI	9	Unmodified	_SLHDRIYVI_					0	0	0		nc|ENSG00000117153|Q53G59-2|KLHL12;ENSG00000117153|ENST00000367261|KLHL12	nc|ENSG00000117153|Q53G59-2|KLHL12	nc|ENSG00000117153|Q53G59-2|KLHL12	MULTI-SECPEP	A375_MHC_IP_R2	2	558.71435546875	2	558.314023	1114.61349	-0.88869	-0.00049617	1.3277	0.00074127	0.439	0.0002451	558.3148344344118	55.893	0.61227	56.644	56.438	57.051	0.75014					19	11	3	0	0	0	0.5205	1	21156	21156		38.615	26.974	1	2431100			49385	3461	35918	36207	48265	48265					0.06077120742952502
SLHDRRPY	8	Unmodified	_SLHDRRPY_					0	0	0			REV__ENST00000445061.5_1_3:47852163-47868840:+|nuORF	REV__ENST00000445061.5_1_3:47852163-47868840:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	521.6610717773438	2	522.27269	1042.53083	-0.82439	-0.00043055	-0.73456	-0.00038364	-1.5589	-0.00081419	522.2744989612371	26.399	0.20207	26.399	26.221	26.423	0					5	3	2	0	0	0	0.95423	1	7789	7789		7.9102	0	1	821480	+		49386	24810	35919	36208	48266	48266					0.01126223734809173
SLHDTVTTL	9	Unmodified	_SLHDTVTTL_					0	0	0		ENSG00000215305|ENST00000380445|VPS16;ENST00000380443.5_1_20:2843179-2847217:+|nuORF;nc|ENSG00000215305|Q9H269-2|VPS16;ENST00000380393.7_1_20:2844875-2903853:+|nuORF	ENSG00000215305|ENST00000380445|VPS16	ENSG00000215305|ENST00000380445|VPS16	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1609802246094	2	493.761289	985.508025	-0.48433	-0.00023914	1.0253	0.00050623	0.54093	0.00026709	493.7612608963058	45.762	0.75735	46.527	46.048	46.805	0.76519					22	14	2	0	0	0	0.030624	1	17142	17142		88.904	40.558	1	3538000			49387	9643	35920	36209	48267	48267					0.014691598266836081
SLHDYAQMQED	11	Unmodified	_SLHDYAQMQED_					0	0	0			REV__ENSG00000137766|ENST00000260323|UNC13C	REV__ENSG00000137766|ENST00000260323|UNC13C	MULTI-SECPEP	A375_MHC_IP_R1	1	446.6783447265625	3	446.18732	1335.54013	-0.26556	-0.00011849	0.24003	0.0001071	-0.025534	-1.1393E-05	446.1873117862637	84.744	0.61391	84.744	84.341	84.955	0					23	11	3	0	0	0	1.0008	1	30925	30925		0	0	1	2161400	+		49388	19030	35921	36210	48268	48268					-0.11421840552497997
SLHEAVRF	8	Unmodified	_SLHEAVRF_					0	0	0		nc|ENSG00000288235|P0CH98|FAM106C;nc|ENSG00000273018|Q4KMX7|FAM106A	nc|ENSG00000288235|P0CH98|FAM106C	nc|ENSG00000288235|P0CH98|FAM106C	MULTI-MSMS	A375_MHC_IP_R2	2	479.6573181152344	2	479.758884	957.503215	-1.1013	-0.00052834	1.1329	0.00054354	0.031674	1.5196E-05	479.75885694691846	52.963	0.3034	53.714	53.538	53.842	0.75105					10	5	3	0	0	0	0.77515	1	19954	19954		12.532	0.89125	1	2328500			49389	14935	35922	36211	48269	48269					0.022763204745729126
SLHEEENNI	9	Unmodified	_SLHEEENNI_					0	0	0		nc|ENSG00000117481|Q96CB9-3|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;ENSG00000117481|ENST00000474844|NSUN4	nc|ENSG00000117481|Q96CB9-3|NSUN4	nc|ENSG00000117481|Q96CB9-3|NSUN4	MULTI-SECPEP	A375_MHC_IP_R2	2	362.62188720703125	3	362.168366	1083.48327	-0.18231	-6.6026E-05	0.44901	0.00016262	0.2667	9.6589E-05	362.1685268833456	31.3	0.35869	32.019	31.821	32.18	0.71857					10	6	2	0	0	0	0.76452	1	11122	11122		12.241	0	1	1245100			49390	3488	35923	36212	48270	48270					-0.05513520046724807
SLHEELQKI	9	Unmodified	_SLHEELQKI_					0	0	0		nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-SECPEP	A375_MHC_IP_R2	2	366.6447448730469	3	366.204751	1095.59242	-0.11631	-4.2592E-05	0.36688	0.00013435	0.25057	9.176E-05	366.20439701936317	34.987	2.233	35.75	35.017	37.25	0.76338					25	15	3	0	0	0	0.47368	1	12753	12753		6.6304	5.6681	1	6471400			49391	4667	35924	36213	48271	48271					0.04845110643418593
SLHEIISNF	9	Unmodified	_SLHEIISNF_					0	0	0			REV__nc|ENSG00000182670|P53804-3|TTC3	REV__nc|ENSG00000182670|P53804-3|TTC3	MULTI-MSMS	A375_MHC_IP_R1	1	531.1781616210938	2	530.277106	1058.53966	-0.27889	-0.00014789	-0.094074	-4.9885E-05	-0.37296	-0.00019777	530.2770720736661	69.137	1.7235	69.137	68.26	69.983	0					91	33	3	0	0	0	0.35581	1	24890	24890		26.884	0.61551	1	243130000	+		49392	21703	35925	36214	48272	48272					0.012731525806202626
SLHEIMIQL	9	Unmodified	_SLHEIMIQL_					0	0	0			REV__ENSG00000179832|ENST00000326134|MROH1	REV__ENSG00000179832|ENST00000326134|MROH1	MSMS	A375_MHC_IP_R1	1	542.2501220703125	2	542.296985	1082.57942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.9	1	129.9	129.4	130.4	0								0	0	0	0.12568	1	49972	49972		34.102	1.797	1		+		49393	21580	35926	36215	48273	48273					0.041429562596931646
SLHEKITKY	9	Unmodified	_SLHEKITKY_					0	0	0			REV__ENSG00000092421|ENST00000343348|SEMA6A	REV__ENSG00000092421|ENST00000343348|SEMA6A	MSMS	A375_MHC_IP_R2	2	559.8694458007812	2	559.813856	1117.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.59	1	79.335	78.835	79.835	0.74474								0	0	0	0.15468	1	29844	29844		13.906	0.86358	1		+		49394	16970	35927	36216	48274	48274					0.05905701023084475
SLHEKITKY	9	Unmodified	_SLHEKITKY_					0	0	0			REV__ENSG00000092421|ENST00000343348|SEMA6A	REV__ENSG00000092421|ENST00000343348|SEMA6A	MULTI-SECPEP	A375_MHC_IP_R2	2	373.9574279785156	3	373.544996	1117.61316	0.070814	2.6452E-05	-0.25803	-9.6386E-05	-0.18722	-6.9934E-05	373.5448649150038	23.206	0.45742	23.836	23.572	24.029	0.63014					11	8	2	0	0	0	0.77396	1	7504	7504		1.9064	0	1	3472600	+		49395	16970	35927	36216	48275	48275					0.05905701023084475
SLHELEKGLAE	11	Unmodified	_SLHELEKGLAE_					0	0	0			REV__ENSG00000163634|ENST00000295899|THOC7	REV__ENSG00000163634|ENST00000295899|THOC7	MULTI-MSMS	A375_MHC_IP_R1	1	409.60455322265625	3	409.218949	1224.63502	-0.21268	-8.7032E-05	0.62405	0.00025537	0.41137	0.00016834	409.5535503458084	27.204	0.40301	27.204	26.928	27.331	0					13	7	2	0	0	0	0.69069	1	8113	8113		16.275	2.7559	1	3558700	+		49396	20390	35928	36217	48276	48276					0.03168460981009957
SLHELEKGLAE	11	Unmodified	_SLHELEKGLAE_					0	0	0			REV__ENSG00000163634|ENST00000295899|THOC7	REV__ENSG00000163634|ENST00000295899|THOC7	MULTI-MSMS	A375_MHC_IP_R2	2	409.619140625	3	409.218949	1224.63502	-0.36835	-0.00015074	1.0733	0.0004392	0.70491	0.00028846	409.219269180083	26.486	0.30464	27.146	26.957	27.262	0.65992					11	5	3	0	0	0	0.73111	1	8986	8986		7.846	2.4433	1	3977000	+		49397	20390	35928	36217	48277	48277					0.03168460981009957
SLHEPNVAFD	10	Unmodified	_SLHEPNVAFD_					0	0	0			REV__SMURF2|p.S473F|1|0.33|ENSG00000108854|chr17:64557621-64557621|G/A|missense_variant	REV__SMURF2|p.S473F|1|0.33|ENSG00000108854|chr17:64557621-64557621|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	565.1692504882812	2	564.769645	1127.52474	-0.84263	-0.00047589	0.20076	0.00011338	-0.64187	-0.00036251	564.7697003020536	58.869	0.4057	59.616	59.336	59.742	0.74714					12	7	2	0	0	0	0.88918	1	22306	22306		5.2969	0.39987	1	2009700	+		49398	28017	35929	36218	48278	48278					-0.03392339287370305
SLHGDLELDF	10	Unmodified	_SLHGDLELDF_					0	0	0			REV__ENST00000537971.5_1_12:3395045-3395321:+|nuORF	REV__ENST00000537971.5_1_12:3395045-3395321:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	382.1346740722656	3	382.520628	1144.54005	-0.072531	-2.7745E-05	0.33688	0.00012886	0.26435	0.00010112	382.5206409171492	38.273	0.30404	38.273	38.067	38.371	0					9	5	2	0	0	0	0.93406	1	12919	12919		3.5871	1.0886	1	1443700	+		49399	25930	35930	36219	48279	48279					-0.02643472490217391
SLHGDLELDF	10	Unmodified	_SLHGDLELDF_					0	0	0			REV__ENST00000537971.5_1_12:3395045-3395321:+|nuORF	REV__ENST00000537971.5_1_12:3395045-3395321:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	382.520628	1144.54005	-0.47051	-0.00017998	0.29123	0.0001114	-0.17928	-6.8579E-05	382.52073037449117	37.459	0.30769	38.23	38.07	38.378	0.7709	-0.021857	-2.9831E-05	NaN	3.5871	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1455800	+		49400	25930	35930	36219							-0.02643472490217391
SLHHSCTGW	9	Unmodified	_SLHHSCTGW_					0	0	0			REV__ENST00000586645.5_1_19:19868918-19869302:-|nuORF	REV__ENST00000586645.5_1_19:19868918-19869302:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	514.6246948242188	2	514.224351	1026.43415	-0.43837	-0.00022542	-0.13839	-7.1163E-05	-0.57676	-0.00029659	514.2242365682306	88.284	0.81606	88.284	87.898	88.714	0					32	15	3	0	0	0	0.55818	1	32390	32390		16.942	0	1	5288700	+		49401	26394	35931	36220	48280	48280					-0.07801086816630232
SLHHSCTGW	9	Unmodified	_SLHHSCTGW_					0	0	0			REV__ENST00000586645.5_1_19:19868918-19869302:-|nuORF	REV__ENST00000586645.5_1_19:19868918-19869302:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	514.6241455078125	2	514.224351	1026.43415	-0.66978	-0.00034442	-0.16203	-8.332E-05	-0.83181	-0.00042774	514.2243011507168	87.61	1.0113	88.342	87.711	88.722	0.7318					38	19	3	0	0	0	0.55818	1	33288	33288		16.942	2.3606	1	4997100	+		49402	26394	35931	36220	48281	48281					-0.07801086816630232
SLHICLLVY	9	Unmodified	_SLHICLLVY_					0	0	0		ENST00000399503.3_1_5:56189364-56189436:+|nuORF	ENST00000399503.3_1_5:56189364-56189436:+|nuORF	ENST00000399503.3_1_5:56189364-56189436:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	354.97198486328125	3	354.200172	1059.57869	-0.13685	-4.8471E-05	4.2611	0.0015093	4.1242	0.0014608	354.20175213400483	36.25	0.30553	36.25	36.084	36.389	0					7	5	2	0	0	0	0.80005	1	12073	12073		0.23584	0	1	945420			49403	11540	35932	36221	48282	48282					0.051281616106280126
SLHIWKKVL	9	Unmodified	_SLHIWKKVL_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	A375_MHC_IP_R2	2	374.9535217285156	3	375.237726	1122.69135	0.087328	3.2769E-05	0.7419	0.00027839	0.82923	0.00031116	375.2379964632038	36.442	0.45858	37.213	36.799	37.258	0.7709					10	8	2	0	0	0	0.80332	1	13145	13145		0.20686	0	1	991210	+		49404	16347	35933	36222	48283	48283					0.13491178398976444
SLHIYGSLLE	10	Unmodified	_SLHIYGSLLE_					0	0	0			REV__nc|ENSG00000134376|P82279-2|CRB1	REV__nc|ENSG00000134376|P82279-2|CRB1	MSMS	A375_MHC_IP_R2	2	377.9551696777344	3	377.873001	1130.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.557	1	23.187	22.687	23.687	0.63014								0	0	0	0.15365	1	7172	7172		8.9762	1.3673	1		+		49405	27234	35934	36223	48284	48284					0.03709994786186144
SLHKAFTEV	9	Unmodified	_SLHKAFTEV_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-SECPEP	A375_MHC_IP_R2	2	515.653076171875	2	516.279649	1030.54475	-0.65293	-0.00033709	0.65336	0.00033731	0.00042619	2.2003E-07	516.2800913915231	68.326	0.45613	69.061	68.816	69.272	0.73511					15	8	2	0	0	0	0.71541	1	25832	25832		7.2892	0	1	1982200			49406	1419	35935	36224	48285	48285					0.030694564432451443
SLHLATHKVIH	11	Unmodified	_SLHLATHKVIH_					0	0	0		ZNF681|p.S547L|1|0.26|ENSG00000196172|chr19:23743910-23743910|G/A|missense_variant	ZNF681|p.S547L|1|0.26|ENSG00000196172|chr19:23743910-23743910|G/A|missense_variant	ZNF681|p.S547L|1|0.26|ENSG00000196172|chr19:23743910-23743910|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	628.2946166992188	2	628.367121	1254.71969	-0.72704	-0.00045685	2.6487	0.0016643	1.9216	0.0012075	628.8696707584846	89.949	0.41063	90.681	90.391	90.801	0.7318					11	7	2	0	0	0	0.9889	1	34192	34192		12.241	7.3436	1	1993900			49407	30238	35936	36225	48286	48286					0.10251876308279861
SLHLCEHFW	9	Unmodified	_SLHLCEHFW_					0	0	0		ENST00000452606.2_1_3:12880633-12880819:-|nuORF	ENST00000452606.2_1_3:12880633-12880819:-|nuORF	ENST00000452606.2_1_3:12880633-12880819:-|nuORF	MSMS	A375_MHC_IP_R2	2	585.960693359375	2	586.271301	1170.52805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.886	1	99.646	99.146	100.15	0.75977								0	0	0	0.15486	1	37509	37509		8.5933	0	1				49408	12084	35937	36226	48287	48287					-0.05039367714357468
SLHLFGRKI	9	Unmodified	_SLHLFGRKI_					0	0	0		ENST00000369258.8_1_1:146724383-146726565:+|nuORF	ENST00000369258.8_1_1:146724383-146726565:+|nuORF	ENST00000369258.8_1_1:146724383-146726565:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	357.44903564453125	3	357.553826	1069.63965	-0.49777	-0.00017798	-1.7626	-0.00063022	-2.2604	-0.0008082	357.55340789993835	19.394	0.55763	19.998	19.733	20.291	0.60308					26	10	4	0	0	0	0.65246	1	6005	6005		2.086	0	1	1713500			49409	11129	35938	36227	48288	48288					0.10761434705091233
SLHLGEVNY	9	Unmodified	_SLHLGEVNY_					0	0	0			REV__tr|U7SJF1|U7SJF1_FUSNUThiamine-phosphatepyrophosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02118PE=4SV=1	REV__tr|U7SJF1|U7SJF1_FUSNUThiamine-phosphatepyrophosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02118PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	516.6611328125	2	516.261456	1030.50836	-0.68061	-0.00035137	-0.010553	-5.4479E-06	-0.69116	-0.00035682	516.26133556048	78.979	0.55897	79.724	79.387	79.946	0.74474					26	10	3	0	0	0	0.62767	1	29943	29943		7.2892	0	1	3865000	+		49410	28231	35939	36228	48289	48289					-0.005674204534670935
SLHLHAGM	8	Unmodified	_SLHLHAGM_					0	0	0			REV__ENSG00000124019|ENST00000409685|FAM124B	REV__ENSG00000124019|ENST00000409685|FAM124B	MSMS	A375_MHC_IP_R1	1	433.2849426269531	2	433.22108	864.427607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.49	1	132.49	131.99	132.99	0								0	0	0	0.16876	1	51087	51087		2.5775	0	1		+		49411	18267	35940	36229	48290	48290					-0.010029799773633385
SLHLHAGM	8	Unmodified	_SLHLHAGM_					0	0	0			REV__ENSG00000124019|ENST00000409685|FAM124B	REV__ENSG00000124019|ENST00000409685|FAM124B	MSMS	A375_MHC_IP_R2	2	433.2852783203125	2	433.22108	864.427607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.07	1	132.26	131.76	132.76	0.18953								0	0	0	0.16876	1	51955	51955		2.5775	0	1		+		49412	18267	35940	36229	48291	48291					-0.010029799773633385
SLHLILAPL	9	Unmodified	_SLHLILAPL_					0	0	0		ENST00000464461.1_1_7:150413703-150416231:+|nuORF	ENST00000464461.1_1_7:150413703-150416231:+|nuORF	ENST00000464461.1_1_7:150413703-150416231:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	488.4691467285156	2	488.813128	975.611703	-0.81533	-0.00039854	-0.14738	-7.2039E-05	-0.9627	-0.00047058	488.8130595580507	49.888	0.30803	50.642	50.445	50.753	0.75406					7	5	2	0	0	0	0.62767	1	18766	18766		11.64	9.5805	1	664860			49413	12226	35941	36230	48292	48292					0.12292111724991628
SLHLIQTLI	9	Unmodified	_SLHLIQTLI_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|99|3|sense	L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|99|3|sense	L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|99|3|sense	MULTI-SECPEP	A375_MHC_IP_R1	1	519.7216796875	2	519.321317	1036.62808	-0.50838	-0.00026401	0.24847	0.00012904	-0.25991	-0.00013497	519.3214617386252	60.133	0.5591	60.133	59.905	60.464	0					30	10	4	0	0	0	0.4261	1	21630	21630		30.637	0	1	10356000			49414	14270	35942	36231	48293	48293					0.11123192891091094
SLHLKDSGDP	10	Unmodified	_SLHLKDSGDP_					0	0	0		ENST00000446863.5_2_3:17603535-17665376:-|nuORF	ENST00000446863.5_2_3:17603535-17665376:-|nuORF	ENST00000446863.5_2_3:17603535-17665376:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	357.2486572265625	3	356.848856	1067.52474	0.20561	7.3371E-05	-0.2604	-9.2925E-05	-0.054796	-1.9554E-05	356.8486988832985	21.015	1.0689	21.015	20.334	21.403	0					47	20	3	0	0	0	0.87163	1	5382	5382		3.0723	0.78949	1	6047600			49415	12040	35943	36232	48294	48294					-0.006323392873810008
SLHLQVCQDP	10	Unmodified	_SLHLQVCQDP_					0	0	0		ENST00000532571.1_1_8:144766694-144767012:+|nuORF	ENST00000532571.1_1_8:144766694-144767012:+|nuORF	ENST00000532571.1_1_8:144766694-144767012:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	380.93316650390625	3	380.521974	1138.54409	0.78933	0.00030036	0.042621	1.6218E-05	0.83195	0.00031658	380.5219927597922	44.671	0.56046	44.671	44.267	44.827	0					14	10	2	0	0	0	0.91909	1	15575	15575		1.4551	0	1	1091300			49416	13185	35944	36233	48295	48295					-0.019637062681340467
SLHLRDTR	8	Unmodified	_SLHLRDTR_					0	0	0		ENST00000303991.4_1_5:176026425-176026560:-|nuORF	ENST00000303991.4_1_5:176026425-176026560:-|nuORF	ENST00000303991.4_1_5:176026425-176026560:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	498.681396484375	2	499.280515	996.546476	-0.31681	-0.00015818	-0.19854	-9.9126E-05	-0.51535	-0.0002573	499.28066929707154	105.31	1.8274	105.31	103.78	105.6	0					47	35	2	0	0	0	0.972	1	38143	38143		11.64	11.64	1	1407800			49417	10558	35945	36234	48296	48296					0.04806510251853524
SLHLVFQMEV	10	Unmodified	_SLHLVFQMEV_					0	0	0		nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000269713|ENST00000698832|NBPF9	nc|ENSG00000269713|P0DPF3-2|NBPF9	nc|ENSG00000269713|P0DPF3-2|NBPF9	MULTI-SECPEP	A375_MHC_IP_R2	2	401.2835998535156	3	401.54612	1201.61653	-0.28849	-0.00011584	-3.8703	-0.0015541	-4.1588	-0.0016699	401.87967619546487	19.148	0.40163	19.751	19.533	19.935	0.60308					15	7	3	0	0	0	0.93041	1	5723	5723		7.9454	1.3219	1	1577100			49418	9981	35946	36235	48297	48297					0.023786278054330978
SLHLYKRWFRR	11	Unmodified	_SLHLYKRWFRR_					0	0	0			REV__ENSG00000160957|ENST00000617875|RECQL4	REV__ENSG00000160957|ENST00000617875|RECQL4	MSMS	A375_MHC_IP_R1	1	781.5139770507812	2	781.446769	1560.87898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.404	1	88.404	87.904	88.904	0								0	0	0	0.16258	1	32451	32451		5.2969	3.9674	1		+		49419	20192	35947	36236	48298	48298					0.12098009656210706
SLHMLLMLALN	11	Unmodified	_SLHMLLMLALN_					0	0	0		CON__Q2YDI2;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4;ENSG00000115947|ENST00000392857|ORC4	CON__Q2YDI2	CON__Q2YDI2	MSMS	A375_MHC_IP_R1	1	628.4080810546875	2	628.348694	1254.68284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.743	1	97.743	97.243	98.243	0								0	0	0	0.16191	1	35909	35909		8.7454	1.4562	1			+	49420	615	35948	36237	48299	48299					0.06568120375845865
SLHNGVIQL	9	Unmodified	_SLHNGVIQL_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA;ENST00000541366.1_1_1:160303391-160312960:-|nuORF	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	A375_MHC_IP_R1	1	491.1792297363281	2	490.779816	979.545079	-0.35471	-0.00017408	0.65743	0.00032265	0.30272	0.00014857	490.7795605311572	61.239	0.45916	61.239	60.973	61.432	0					19	8	3	0	0	0	0.036758	1	22061	22061		89.401	14.978	1	4584800			49421	3768	35949	36238	48300	48300					0.054488761630864246
SLHNGVIQL	9	Unmodified	_SLHNGVIQL_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA;ENST00000541366.1_1_1:160303391-160312960:-|nuORF	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	A375_MHC_IP_R2	2	491.17962646484375	2	490.779816	979.545079	-0.85366	-0.00041896	1.1051	0.00054236	0.25144	0.0001234	490.7797748133541	60.263	0.61229	61.008	60.701	61.314	0.74503					27	11	3	0	0	0	0.05021	1	22804	22804		88.954	38.099	1	5866500			49422	3768	35949	36238	48301	48301					0.054488761630864246
SLHPDLIYNV	10	Unmodified	_SLHPDLIYNV_					0	0	0		ENSG00000172725|ENST00000341356|CORO1B;ENST00000545736.2_1_11:67208755-67208992:-|nuORF;ENST00000453768.6_1_11:67208484-67210099:-|nuORF	ENSG00000172725|ENST00000341356|CORO1B	ENSG00000172725|ENST00000341356|CORO1B	MULTI-MSMS	A375_MHC_IP_R2	2	586.7119750976562	2	585.811313	1169.60807	-0.60712	-0.00035566	0.11272	6.6034E-05	-0.4944	-0.00028962	585.8115502185648	81.353	0.80716	82.096	81.928	82.736	0.74322					24	15	3	0	0	0	0.42311	1	30923	30923		32.786	6.5175	1	3530600			49423	7730	35950	36239	48302	48302					0.030053971604502294
SLHPDLIYNV	10	Unmodified	_SLHPDLIYNV_					0	0	0		ENSG00000172725|ENST00000341356|CORO1B;ENST00000545736.2_1_11:67208755-67208992:-|nuORF;ENST00000453768.6_1_11:67208484-67210099:-|nuORF	ENSG00000172725|ENST00000341356|CORO1B	ENSG00000172725|ENST00000341356|CORO1B	MULTI-MATCH	A375_MHC_IP_R1	1		2	585.811313	1169.60807	-0.10085	-5.9078E-05	-0.40658	-0.00023818	-0.50743	-0.00029726	585.811125007282	82.171	0.81214	82.171	82.011	82.823	0	0.037452	-0.00024838	NaN	32.786	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4189600			49424	7730	35950	36239							0.030053971604502294
SLHPFSPQL	9	Unmodified	_SLHPFSPQL_					0	0	0			REV__ENST00000461430.1_1_3:168838784-168840415:-|nuORF	REV__ENST00000461430.1_1_3:168838784-168840415:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	513.1869506835938	2	513.274367	1024.53418	-0.73678	-0.00037817	1.0072	0.00051696	0.2704	0.00013879	513.7764999674032	90.636	0.40794	90.636	90.437	90.845	0					10	7	2	0	0	0	0.43185	1	33275	33275		23.148	3.7094	1	806640	+		49425	24975	35951	36240	48303	48303					0.02289473788800933
SLHSHGLRNP	10	Unmodified	_SLHSHGLRNP_					0	0	0			REV__ENSG00000100079|ENST00000215886|LGALS2	REV__ENSG00000100079|ENST00000215886|LGALS2	MULTI-SECPEP	A375_MHC_IP_R2	2	373.3714904785156	3	373.200223	1116.57884	-0.024696	-9.2167E-06	-0.84079	-0.00031378	-0.86548	-0.000323	373.19990751236935	25.273	0.45866	25.917	25.719	26.178	0.64368					14	8	2	0	0	0	0.78945	1	8537	8537		3.0723	2.11	1	1346100	+		49426	17049	35952	36241	48304	48304					0.025212976548345978
SLHSHMPCL	9	Unmodified	_SLHSHMPCL_					0	0	0			REV__ENST00000361874.7_1_2:74588525-74588612:-|nuORF	REV__ENST00000361874.7_1_2:74588525-74588612:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	512.8975219726562	2	512.73878	1023.46301	-0.51207	-0.00026256	2.6121	0.0013393	2.1	0.0010768	512.7401005039975	55.04	0.30389	55.04	54.873	55.177	0					9	5	2	0	0	0	0.71541	1	19705	19705		7.2892	0	1	908760	+		49427	23925	35953	36242	48305	48305					-0.04778685511871572
SLHSKFIRV	9	Unmodified	_SLHSKFIRV_					0	0	0		ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	MULTI-SECPEP	A375_MHC_IP_R1	1	362.62176513671875	3	362.885464	1085.63456	0.027044	9.8139E-06	-0.36948	-0.00013408	-0.34243	-0.00012426	362.8853085850654	32.308	0.55909	32.308	32.075	32.634	0					17	10	2	0	0	0	0.011357	1	10421	10421		94.909	6.545	1	14570000			49428	5868	35954	36243	48306	48306					0.09517130842482402
SLHSKFIRV	9	Unmodified	_SLHSKFIRV_					0	0	0		ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	ENSG00000150907|ENST00000379561|FOXO1	MULTI-SECPEP	A375_MHC_IP_R2	2	363.28521728515625	3	362.885464	1085.63456	-0.13358	-4.8475E-05	-0.41769	-0.00015157	-0.55127	-0.00020005	362.8852616256933	31.311	0.51217	32.029	31.719	32.231	0.71857					28	9	4	0	0	0	0.036758	1	11056	11056		81.915	6.3446	1	11921000			49429	5868	35954	36243	48307	48307					0.09517130842482402
SLHSKLFRV	9	Unmodified	_SLHSKLFRV_					0	0	0		ENSG00000047346|ENST00000619572|ATOSA;nc|ENSG00000047346|Q32MH5-3|ATOSA;nc|ENSG00000047346|Q32MH5-2|ATOSA	ENSG00000047346|ENST00000619572|ATOSA	ENSG00000047346|ENST00000619572|ATOSA	MULTI-MSMS	A375_MHC_IP_R1	1	363.2854309082031	3	362.885464	1085.63456	0.30952	0.00011232	-0.4551	-0.00016515	-0.14558	-5.2829E-05	362.88524045884395	37.536	0.81827	37.536	37.249	38.067	0					36	15	4	0	0	0	0.0090873	1	12646	12646		100.71	16.186	1	13606000			49430	1198	35955	36244	48308	48308					0.09517130842459665
SLHSKLFRV	9	Unmodified	_SLHSKLFRV_					0	0	0		ENSG00000047346|ENST00000619572|ATOSA;nc|ENSG00000047346|Q32MH5-3|ATOSA;nc|ENSG00000047346|Q32MH5-2|ATOSA	ENSG00000047346|ENST00000619572|ATOSA	ENSG00000047346|ENST00000619572|ATOSA	MULTI-SECPEP	A375_MHC_IP_R2	2	363.2853088378906	3	362.885464	1085.63456	-0.28107	-0.000102	-0.17352	-6.2969E-05	-0.4546	-0.00016497	362.88534556052633	36.304	0.66218	37.075	36.799	37.461	0.7709					30	12	3	0	0	0	0.011405	1	13192	13192		100.71	16.186	1	11937000			49431	1198	35955	36244	48309	48309					0.09517130842459665
SLHSLLVDV	9	Unmodified	_SLHSLLVDV_					0	0	0		nc|ENSG00000123358|P22736-2|NR4A1;ENSG00000123358|ENST00000394825|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	MULTI-SECPEP	A375_MHC_IP_R1	1	492.181640625	2	491.782025	981.549496	-0.29629	-0.00014571	-0.30556	-0.00015027	-0.60184	-0.00029598	491.7819382203977	87.954	0.55943	87.954	87.747	88.307	0					21	10	3	0	0	0	0.16229	1	32280	32280		48.346	31.404	1	3805600			49432	3841	35956	36245	48310	48310					0.05798340585999995
SLHSLLVDV	9	Unmodified	_SLHSLLVDV_					0	0	0		nc|ENSG00000123358|P22736-2|NR4A1;ENSG00000123358|ENST00000394825|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	nc|ENSG00000123358|P22736-2|NR4A1	MULTI-SECPEP	A375_MHC_IP_R2	2	492.1815185546875	2	491.782025	981.549496	-0.40604	-0.00019969	-0.20483	-0.00010073	-0.61087	-0.00030042	491.78178463004747	87.007	0.65865	87.74	87.458	88.117	0.73301					28	12	3	0	0	0	0.014271	1	33057	33057		88.904	46.809	1	4535800			49433	3841	35956	36245	48311	48311					0.05798340585999995
SLHSLMCFL	9	Unmodified	_SLHSLMCFL_					0	0	0			REV__ZNF728|p.S181L|1|0.37|ENSG00000269067|chr19:22976795-22976795|G/A|missense_variant	REV__ZNF728|p.S181L|1|0.37|ENSG00000269067|chr19:22976795-22976795|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	526.1583251953125	2	525.759181	1049.50381	-0.39557	-0.00020797	-1.0183	-0.00053537	-1.4138	-0.00074334	525.7585569204936	92.663	0.7587	93.402	92.987	93.746	0.73902					34	14	3	0	0	0	0.11296	1	35201	35201		48.346	4.364	1	5435000	+		49434	29050	35957	36246	48312	48312					-0.018963441922551283
SLHSLMCFL	9	Unmodified	_SLHSLMCFL_					0	0	0			REV__ZNF728|p.S181L|1|0.37|ENSG00000269067|chr19:22976795-22976795|G/A|missense_variant	REV__ZNF728|p.S181L|1|0.37|ENSG00000269067|chr19:22976795-22976795|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	525.759181	1049.50381	-0.39557	-0.00020797	-1.0183	-0.00053537	-1.4138	-0.00074334	525.7585569204936	92.663	0.7587	93.402	92.987	93.746	0.73902	-0.015645	-0.00020481	NaN	48.346	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5435000	+		49435	29050	35957	36246							-0.018963441922551283
SLHSSCTTFAK	11	Unmodified	_SLHSSCTTFAK_					0	0	0			REV__ENSG00000171180|ENST00000641868|OR2M4	REV__ENSG00000171180|ENST00000641868|OR2M4	MSMS	A375_MHC_IP_R1	1	394.57928466796875	3	394.525496	1180.55466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.49	1	21.49	20.99	21.99	0								0	0	0	0.16124	1	5658	5658		6.6235	0.3891	1		+		49436	21049	35958	36247	48313	48313					-0.028397236137152504
SLHSSPGLPCV	11	Unmodified	_SLHSSPGLPCV_					0	0	0			REV__ENST00000554980.5_1_14:76424767-76425082:-|nuORF	REV__ENST00000554980.5_1_14:76424767-76425082:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	548.1895141601562	2	548.776416	1095.53828	-0.47439	-0.00026033	0.47464	0.00026047	0.00024973	1.3705E-07	548.776672475766	54.593	0.91438	54.593	54.314	55.228	0					23	17	2	0	0	0	0.75408	1	19721	19721		34.402	7.5181	1	2217700	+		49437	26088	35959	36248	48314	48314					-0.0056680477980535215
SLHTDEAKW	9	Unmodified	_SLHTDEAKW_					0	0	0			REV__FUT10|p.E412K|1|0.53|ENSG00000172728|chr8:33372783-33372783|C/T|missense_variant	REV__FUT10|p.E412K|1|0.53|ENSG00000172728|chr8:33372783-33372783|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	362.4675598144531	3	362.845334	1085.51417	-0.38392	-0.0001393	3.8218	0.0013867	3.4379	0.0012474	362.84537369371935	51.855	0.357	52.607	52.372	52.729	0.75225					20	6	4	0	0	0	0.71541	1	19531	19531		11.495	5.2889	1	1901400	+		49438	26657	35960	36249	48315	48315					-0.025163219418118388
SLHTELNSV	9	Unmodified	_SLHTELNSV_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	A375_MHC_IP_R1	1	500.65875244140625	2	500.258914	998.503274	-0.31478	-0.00015747	0.12791	6.3989E-05	-0.18687	-9.3481E-05	500.2588675486913	40.411	0.40767	40.411	40.151	40.559	0					13	7	2	0	0	0	0.010037	1	13879	13879		96.285	25.151	1	3992200			49439	1183	35961	36250	48316	48316					0.003962756839086978
SLHTELNSV	9	Unmodified	_SLHTELNSV_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	A375_MHC_IP_R2	2	500.6583251953125	2	500.258914	998.503274	-0.60814	-0.00030423	0.21583	0.00010797	-0.3923	-0.00019625	500.2589969824175	39.571	0.4576	40.345	40.067	40.524	0.77451					13	8	2	0	0	0	0.018546	1	14616	14616		85.272	23.915	1	4517600			49440	1183	35961	36250	48317	48317					0.003962756839086978
SLHVPFNN	8	Unmodified	_SLHVPFNN_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	A375_MHC_IP_R1	1	464.6787109375	2	464.237784	926.461016	-0.26487	-0.00012296	-0.70831	-0.00032882	-0.97318	-0.00045179	464.23754661284266	52.446	0.40575	52.446	52.237	52.643	0					15	7	3	0	0	0	0.7754	1	18706	18706		11.64	0	1	1653200	+		49441	20119	35962	36251	48318	48318					-0.005156549338153127
SLIADLEQL	9	Unmodified	_SLIADLEQL_					0	0	0		ENSG00000162458|ENST00000375766|FBLIM1;nc|ENSG00000162458|Q8WUP2-2|FBLIM1	ENSG00000162458|ENST00000375766|FBLIM1	ENSG00000162458|ENST00000375766|FBLIM1	MULTI-MSMS	A375_MHC_IP_R1	1	501.6800537109375	2	501.279315	1000.54408	-0.44722	-0.00022418	1.2867	0.00064502	0.83952	0.00042083	501.2798075484842	129.07	0.30644	129.07	128.94	129.25	0					6	5	2	0	0	0	0.35581	1	49637	49637		26.884	5.137	1	4888000			49442	6537	35963	36252	48319	48319					0.043826170035117684
SLIADLEQL	9	Unmodified	_SLIADLEQL_					0	0	0		ENSG00000162458|ENST00000375766|FBLIM1;nc|ENSG00000162458|Q8WUP2-2|FBLIM1	ENSG00000162458|ENST00000375766|FBLIM1	ENSG00000162458|ENST00000375766|FBLIM1	MULTI-MATCH	A375_MHC_IP_R2	2		2	501.279315	1000.54408	-0.65479	-0.00032823	-0.064882	-3.2524E-05	-0.71967	-0.00036076	501.2792232729672	128.78	0.20198	129.02	128.91	129.11	0.23946	-0.02211	-0.00010649	NaN	26.884	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2896000			49443	6537	35963	36252							0.043826170035117684
SLIAGVIRV	9	Unmodified	_SLIAGVIRV_					0	0	0		nc|ENSG00000104946|Q9HA65-3|TBC1D17;ENSG00000104946|ENST00000221543|TBC1D17	nc|ENSG00000104946|Q9HA65-3|TBC1D17	nc|ENSG00000104946|Q9HA65-3|TBC1D17	MULTI-MSMS	A375_MHC_IP_R1	1	464.7025146484375	2	464.302927	926.591301	-0.45281	-0.00021024	-0.17915	-8.3181E-05	-0.63196	-0.00029342	464.30283687052895	90.565	0.50876	90.565	90.285	90.794	0					16	9	2	0	0	0	0.2487	1	33281	33281		34.402	3.7652	1	2800000			49444	2556	35964	36253	48320	48320					0.125069410651804
SLIAHQRIH	9	Unmodified	_SLIAHQRIH_					0	0	0		ENSG00000178338|ENST00000322434|ZNF354B	ENSG00000178338|ENST00000322434|ZNF354B	ENSG00000178338|ENST00000322434|ZNF354B	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1925048828125	2	537.811982	1073.60941	-0.80046	-0.0004305	-2.3065	-0.0012405	-3.107	-0.001671	537.8101221121852	68.553	0.35587	68.553	68.361	68.717	0					8	6	2	0	0	0	0.47368	1	24842	24842		20.454	0	1	1229600			49445	8152	35965	36254	48321	48321					0.07555076039898267
SLICMYRFK	9	Unmodified	_SLICMYRFK_					0	0	0			REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	MULTI-MSMS	A375_MHC_IP_R2	2	387.5809326171875	3	387.536679	1159.58821	-0.56486	-0.0002189	-0.40747	-0.00015791	-0.97233	-0.00037681	387.5363711191321	25.011	0.40746	25.655	25.414	25.822	0.64368					13	7	2	0	0	0	0.65721	1	8339	8339		7.1017	1.9033	1	1305600	+		49446	21280	35966	36255	48322	48322					0.014796066244798567
SLICMYRFK	9	Unmodified	_SLICMYRFK_					0	0	0			REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	MULTI-MATCH	A375_MHC_IP_R1	1		3	387.536679	1159.58821	0.12417	4.812E-05	-0.46807	-0.00018139	-0.3439	-0.00013327	387.536176021943	25.566	0.40815	25.566	25.357	25.765	0	-0.044163	-5.3045E-05	NaN	7.1017	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1403400	+		49447	21280	35966	36255							0.014796066244798567
SLIDFLQTF	9	Unmodified	_SLIDFLQTF_					0	0	0			REV__ENST00000543046.1_1_12:69218003-69218535:+|nuORF	REV__ENST00000543046.1_1_12:69218003-69218535:+|nuORF	MSMS	A375_MHC_IP_R1	1	542.192138671875	2	542.289682	1082.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.32	1	134.32	133.82	134.82	0								0	0	0	0.11332	1	51801	51801		37.974	7.3375	1		+		49448	25973	35967	36256	48323	48323					0.02683207383165609
SLIDFLRVV	9	Unmodified	_SLIDFLRVV_					0	0	0		ENSG00000169410|ENST00000618819|PTPN9	ENSG00000169410|ENST00000618819|PTPN9	ENSG00000169410|ENST00000618819|PTPN9	MULTI-MSMS	A375_MHC_IP_R2	2	531.7211303710938	2	531.321317	1060.62808	-0.6462	-0.00034334	3.8609	0.0020514	3.2147	0.001708	531.3234244889577	130.98	0.4576	131.19	131.11	131.57	0.21419					18	8	3	0	0	0	0.46465	1	51547	51547		21.537	2.28	1	12975000			49449	7405	35968	36257	48324	48324					0.1001919289108173
SLIDGYYRL	9	Unmodified	_SLIDGYYRL_					0	0	0		ENSG00000096968|ENST00000381652|JAK2;JAK2|p.E577Sfs*8|1|0.71|ENSG00000096968|chr9:5072578-5072579|AG/-|frameshift_variant	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	MULTI-SECPEP	A375_MHC_IP_R1	1	550.6924438476562	2	550.292756	1098.57096	-0.74775	-0.00041148	0.78497	0.00043196	0.037225	2.0484E-05	550.2929974179772	91.039	0.75998	91.039	90.641	91.401	0					30	14	3	0	0	0	0.41731	1	33451	33451		45.7	45.7	1	3745200			49450	2064	35969	36258	48325	48325					0.025617256147143053
SLIDGYYRL	9	Unmodified	_SLIDGYYRL_					0	0	0		ENSG00000096968|ENST00000381652|JAK2;JAK2|p.E577Sfs*8|1|0.71|ENSG00000096968|chr9:5072578-5072579|AG/-|frameshift_variant	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	MULTI-MSMS	A375_MHC_IP_R2	2	550.6932983398438	2	550.292756	1098.57096	-0.67969	-0.00037403	0.67346	0.0003706	-0.0062332	-3.4301E-06	550.2931372637764	90.352	0.55829	91.084	90.801	91.36	0.73191					24	10	3	0	0	0	0.12591	2	34360	34305;34360		57.722	21.595	1	3459300			49451	2064	35969	36258	48326;48327	48327					0.025617256147143053
SLIDIDNP	8	Unmodified	_SLIDIDNP_					0	0	0			REV__tr|U7T3R5|U7T3R5_FUSNUtRNApseudouridinesynthaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=truAPE=3SV=1	REV__tr|U7T3R5|U7T3R5_FUSNUtRNApseudouridinesynthaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=truAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	887.012939453125	1	886.451639	885.444362	-0.097806	-8.67E-05	3.3272	0.0029494	3.2294	0.0028627	886.455304754233	110.86	0.51102	110.86	110.65	111.16	0					12	9	2	0	0	0	0.70843	1	40643	40643		32.117	0	1	2055200	+		49452	28785	35970	36259	48328	48328					-0.002942006104262873
SLIDIDNP	8	Unmodified	_SLIDIDNP_					0	0	0			REV__tr|U7T3R5|U7T3R5_FUSNUtRNApseudouridinesynthaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=truAPE=3SV=1	REV__tr|U7T3R5|U7T3R5_FUSNUtRNApseudouridinesynthaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=truAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	887.012939453125	1	886.451639	885.444362	-0.097806	-8.67E-05	3.3272	0.0029494	3.2294	0.0028627	886.455304754233	110.86	0.51102	110.86	110.65	111.16	0					12	9	2	0	0	0	0.86765	1	40643	40643		32.117	0	1	2055200	+		49453	28785	35970	36259	48329	48329					-0.002942006104262873
SLIDIVTEI	9	Unmodified	_SLIDIVTEI_					0	0	0		ENSG00000068745|ENST00000328631|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	MULTI-MSMS	A375_MHC_IP_R1	1	1005.3333740234375	1	1002.57175	1001.56448	-0.055011	-5.5153E-05	0.45937	0.00046055	0.40436	0.0004054	1002.5720019672781	133.33	0.40764	133.33	133.2	133.61	0					19	7	4	0	0	0	0.03063	1	51422	51422		74.423	16.951	1	45022000			49454	1464	35971	36260	48330	48330					0.06375787663341725
SLIDKRIKL	9	Unmodified	_SLIDKRIKL_					0	0	0		ENSG00000166046|ENST00000299045|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	MULTI-MSMS	A375_MHC_IP_R1	1	362.9726867675781	3	362.572886	1084.69683	0.28458	0.00010318	-0.28237	-0.00010238	0.0022088	8.0084E-07	362.5727237600372	45.966	0.45689	45.966	45.738	46.195	0					23	8	4	0	0	0	0.027818	1	16089	16089		76.825	21.322	1	17626000			49455	7020	35972	36261	48331	48331					0.1578685719080113
SLIDKRIKL	9	Unmodified	_SLIDKRIKL_					0	0	0		ENSG00000166046|ENST00000299045|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	MULTI-MSMS	A375_MHC_IP_R2	2	362.9726257324219	3	362.572886	1084.69683	-0.24353	-8.8298E-05	-0.076444	-2.7717E-05	-0.31998	-0.00011601	362.5728170169263	44.935	0.51058	45.705	45.441	45.951	0.7691					22	9	3	0	0	0	0.052747	2	16772	16772;16860		63.227	20.392	1	12108000			49456	7020	35972	36261	48332;48333	48332					0.1578685719080113
SLIDQFFGV	9	Unmodified	_SLIDQFFGV_					0	0	0		nc|ENSG00000101557|P54578-3|USP14;ENSG00000101557|ENST00000261601|USP14;nc|ENSG00000101557|P54578-2|USP14	nc|ENSG00000101557|P54578-3|USP14	nc|ENSG00000101557|P54578-3|USP14	MULTI-MSMS	A375_MHC_IP_R1	1	513.6681518554688	2	513.26875	1024.52295	-0.77469	-0.00039763	-0.0020261	-1.0399E-06	-0.77672	-0.00039867	513.2686023007163	135.16	0.96584	135.16	134.93	135.9	0					28	18	4	0	0	0	0.0028027	1	52117	52117		139.14	49.738	1	61752000			49457	2308	35973	36262	48334	48334					0.011666516946661432
SLIDQFFGV	9	Unmodified	_SLIDQFFGV_					0	0	0		nc|ENSG00000101557|P54578-3|USP14;ENSG00000101557|ENST00000261601|USP14;nc|ENSG00000101557|P54578-2|USP14	nc|ENSG00000101557|P54578-3|USP14	nc|ENSG00000101557|P54578-3|USP14	MULTI-MSMS	A375_MHC_IP_R2	2	513.6683959960938	2	513.26875	1024.52295	-0.63531	-0.00032609	-0.34382	-0.00017647	-0.97913	-0.00050256	513.2684251126313	135.04	0.76288	135.18	134.95	135.71	0.13901					25	14	4	0	0	0	0.0098183	1	53109	53109		114.65	35.053	1	51899000			49458	2308	35973	36262	48335	48335					0.011666516946661432
SLIDQVEEVKK	11	Unmodified	_SLIDQVEEVKK_					0	0	0			REV__tr|U7SS40|U7SS40_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01533PE=4SV=1	REV__tr|U7SS40|U7SS40_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01533PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	430.30902099609375	3	429.910004	1286.70818	-0.35466	-0.00015247	-1.3505	-0.00058059	-1.7052	-0.00073306	429.90923596528194	130.02	1.0657	130.02	129.3	130.36	0					26	20	2	0	0	0	0.73679	1	50040	50040		2.4348	0	1	4388900	+		49459	28416	35974	36263	48336	48336					0.07629589703606143
SLIDQVEEVKK	11	Unmodified	_SLIDQVEEVKK_					0	0	0			REV__tr|U7SS40|U7SS40_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01533PE=4SV=1	REV__tr|U7SS40|U7SS40_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01533PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	429.910004	1286.70818	-0.35466	-0.00015247	-1.3505	-0.00058059	-1.7052	-0.00073306	429.90923596528194	130.02	1.0657	130.02	129.3	130.36	0	0.053819	0.0006034	NaN	2.4348	26	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4388900	+		49460	28416	35974	36263							0.07629589703606143
SLIEEWDPRER	11	Unmodified	_SLIEEWDPRER_					0	0	0			REV__ARHGAP32|p.T71I|1|0.62|ENSG00000134909|chr11:129164332-129164332|G/A|missense_variant	REV__ARHGAP32|p.T71I|1|0.62|ENSG00000134909|chr11:129164332-129164332|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	715.3004760742188	2	715.357148	1428.69974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.72	1	102.72	102.22	103.22	0								0	0	0	0.16258	1	37749	37749		5.2969	2.3016	1		+		49461	15436	35975	36264	48337	48337					0.0025403578697478224
SLIEHLQGL	9	Unmodified	_SLIEHLQGL_					0	0	0		nc|ENSG00000166762|Q96P56-2|CATSPER2;ENSG00000166762|ENST00000396879|CATSPER2;nc|ENSG00000166762|Q96P56-3|CATSPER2;nc|ENSG00000166762|Q96P56-4|CATSPER2;ENST00000415968.2_1_15:43932485-43940259:-|nuORF;ENST00000469461.5_1_15:43927692-43940259:-|nuORF	nc|ENSG00000166762|Q96P56-2|CATSPER2	nc|ENSG00000166762|Q96P56-2|CATSPER2	MULTI-SECPEP	A375_MHC_IP_R1	1	505.6871337890625	2	505.287474	1008.5604	-0.52765	-0.00026662	-0.503	-0.00025416	-1.0307	-0.00052078	505.28707063998775	84.131	0.70651	84.131	83.736	84.442	0					19	13	2	0	0	0	0.042716	1	30804	30804		86.332	13.364	1	4302600			49462	7109	35976	36265	48338	48338					0.056457429602687625
SLIEHLQGL	9	Unmodified	_SLIEHLQGL_					0	0	0		nc|ENSG00000166762|Q96P56-2|CATSPER2;ENSG00000166762|ENST00000396879|CATSPER2;nc|ENSG00000166762|Q96P56-3|CATSPER2;nc|ENSG00000166762|Q96P56-4|CATSPER2;ENST00000415968.2_1_15:43932485-43940259:-|nuORF;ENST00000469461.5_1_15:43927692-43940259:-|nuORF	nc|ENSG00000166762|Q96P56-2|CATSPER2	nc|ENSG00000166762|Q96P56-2|CATSPER2	MULTI-SECPEP	A375_MHC_IP_R2	2	505.68682861328125	2	505.287474	1008.5604	-0.68296	-0.00034509	-0.009085	-4.5905E-06	-0.69205	-0.00034968	505.28719180641167	83.164	0.8117	83.903	83.494	84.305	0.73962					25	15	2	0	0	0	0.04038	1	31605	31605		85.642	13.719	1	3233400			49463	7109	35976	36265	48339	48339					0.056457429602687625
SLIEKAKYN	9	Unmodified	_SLIEKAKYN_					0	0	0		tr|U7STC9|U7STC9_FUSNUPhosphoribosylglycinamideformyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purNPE=3SV=1	tr|U7STC9|U7STC9_FUSNUPhosphoribosylglycinamideformyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purNPE=3SV=1	tr|U7STC9|U7STC9_FUSNUPhosphoribosylglycinamideformyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purNPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	533.6874389648438	2	533.300581	1064.58661	-0.77154	-0.00041146	0.39532	0.00021082	-0.37622	-0.00020064	533.3007747870156	39.542	0.45702	40.316	40.169	40.626	0.77451					12	8	2	0	0	0	0.76452	1	14577	14577		1.8442	1.8442	1	1720400			49464	29682	35977	36266	48340	48340					0.05690012131753974
SLIEKAKYN	9	Unmodified	_SLIEKAKYN_					0	0	0		tr|U7STC9|U7STC9_FUSNUPhosphoribosylglycinamideformyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purNPE=3SV=1	tr|U7STC9|U7STC9_FUSNUPhosphoribosylglycinamideformyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purNPE=3SV=1	tr|U7STC9|U7STC9_FUSNUPhosphoribosylglycinamideformyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purNPE=3SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	533.300581	1064.58661	-0.60892	-0.00032473	0.052947	2.8237E-05	-0.55597	-0.0002965	533.3006075222978	40.329	0.30651	40.329	40.151	40.458	0	0.0064875	-0.00026561	NaN	1.8442	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1507300			49465	29682	35977	36266							0.05690012131753974
SLIEKIPTA	9	Unmodified	_SLIEKIPTA_					0	0	0		ENSG00000119707|ENST00000261973|RBM25	ENSG00000119707|ENST00000261973|RBM25	ENSG00000119707|ENST00000261973|RBM25	MULTI-SECPEP	A375_MHC_IP_R2	2	486.6915283203125	2	486.292225	970.569897	-0.93423	-0.00045431	-0.23234	-0.00011299	-1.1666	-0.00056729	486.2922678917074	60.119	1.0132	60.866	60.098	61.111	0.74714					31	19	3	0	0	0	0.09145	1	22744	22744		78.06	30.312	1	7887200			49466	3614	35978	36267	48341	48341					0.08343511245800528
SLIEKLWQT	9	Unmodified	_SLIEKLWQT_					0	0	0		nc|ENSG00000080298|P48380-2|RFX3;ENSG00000080298|ENST00000617270|RFX3;nc|ENSG00000080298|P48380-3|RFX3	nc|ENSG00000080298|P48380-2|RFX3	nc|ENSG00000080298|P48380-2|RFX3	MULTI-SECPEP	A375_MHC_IP_R1	1	559.7164306640625	2	559.316232	1116.61791	-0.43612	-0.00024393	0.35489	0.0001985	-0.081233	-4.5435E-05	559.3162820883266	97.857	0.96521	97.857	97.49	98.455	0					37	18	3	0	0	0	0.011143	1	35887	35887		114.19	79.254	1	15014000			49467	1711	35979	36268	48342	48342					0.06426585165854704
SLIEKLWQT	9	Unmodified	_SLIEKLWQT_					0	0	0		nc|ENSG00000080298|P48380-2|RFX3;ENSG00000080298|ENST00000617270|RFX3;nc|ENSG00000080298|P48380-3|RFX3	nc|ENSG00000080298|P48380-2|RFX3	nc|ENSG00000080298|P48380-2|RFX3	MULTI-SECPEP	A375_MHC_IP_R2	2	559.716064453125	2	559.316232	1116.61791	-0.84121	-0.0004705	-0.10622	-5.9409E-05	-0.94743	-0.00052991	559.3162168956718	96.928	0.75888	97.684	97.318	98.077	0.75586					41	14	4	0	0	0	0.011004	1	36744	36744		132.38	88.521	1	13057000			49468	1711	35979	36268	48343	48343					0.06426585165854704
SLIEKPPIL	9	Unmodified	_SLIEKPPIL_					0	0	0		ENST00000534677.1_1_11:57472348-57479651:-|nuORF;nc|ENSG00000156603|A0JLT2-2|MED19;ENST00000528205.1_1_11:57472131-57479651:-|nuORF;nc|ENSG00000156603|A0JLT2|MED19;ENSG00000156603|ENST00000431606|MED19	ENST00000534677.1_1_11:57472348-57479651:-|nuORF	ENST00000534677.1_1_11:57472348-57479651:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	505.7180480957031	2	505.318243	1008.62193	-0.56677	-0.0002864	-0.70971	-0.00035863	-1.2765	-0.00064503	505.31808914118585	84.368	0.60677	84.368	84.091	84.697	0					21	11	2	0	0	0	0.19747	1	30928	30928		38.176	7.539	1	2739100			49469	6200	35980	36269	48344	48344					0.11796674659569817
SLIEKPPIL	9	Unmodified	_SLIEKPPIL_					0	0	0		ENST00000534677.1_1_11:57472348-57479651:-|nuORF;nc|ENSG00000156603|A0JLT2-2|MED19;ENST00000528205.1_1_11:57472131-57479651:-|nuORF;nc|ENSG00000156603|A0JLT2|MED19;ENSG00000156603|ENST00000431606|MED19	ENST00000534677.1_1_11:57472348-57479651:-|nuORF	ENST00000534677.1_1_11:57472348-57479651:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	505.7178039550781	2	505.318243	1008.62193	-0.67195	-0.00033955	-0.81843	-0.00041357	-1.4904	-0.00075311	505.31813302998114	83.365	1.0644	84.104	83.444	84.508	0.73962					26	20	2	0	0	0	0.38603	1	31737	31737		25.399	4.9457	1	1919400			49470	6200	35980	36269	48345	48345					0.11796674659569817
SLIEKYFSV	9	Unmodified	_SLIEKYFSV_					0	0	0		ENSG00000182481|ENST00000330459|KPNA2;KPNA2|p.S488L|1|0.32|ENSG00000182481|chr17:68045887-68045887|C/T|missense_variant	ENSG00000182481|ENST00000330459|KPNA2	ENSG00000182481|ENST00000330459|KPNA2	MULTI-MSMS	A375_MHC_IP_R1	1	543.6973266601562	2	543.297507	1084.58046	-0.56171	-0.00030518	0.5069	0.0002754	-0.054813	-2.978E-05	543.2979216574756	98.749	0.56049	98.749	98.455	99.015	0					23	10	3	0	0	0	0.35164	1	36304	36304		34.932	9.5328	1	1595000			49471	8410	35981	36270	48346	48346					0.04155493900225338
SLIEKYFSV	9	Unmodified	_SLIEKYFSV_					0	0	0		ENSG00000182481|ENST00000330459|KPNA2;KPNA2|p.S488L|1|0.32|ENSG00000182481|chr17:68045887-68045887|C/T|missense_variant	ENSG00000182481|ENST00000330459|KPNA2	ENSG00000182481|ENST00000330459|KPNA2	MULTI-SECPEP	A375_MHC_IP_R2	2	543.6976318359375	2	543.297507	1084.58046	-0.89272	-0.00048501	-1.4328	-0.00077845	-2.3255	-0.0012635	543.7975424411176	97.84	0.40819	98.596	98.432	98.84	0.75587					13	7	2	0	0	0	0.59614	1	37145	37145		28.495	2.2264	1	1959700			49472	8410	35981	36270	48347	48347					0.04155493900225338
SLIEKYFSV	9	Unmodified	_SLIEKYFSV_					0	0	0		ENSG00000182481|ENST00000330459|KPNA2;KPNA2|p.S488L|1|0.32|ENSG00000182481|chr17:68045887-68045887|C/T|missense_variant	ENSG00000182481|ENST00000330459|KPNA2	ENSG00000182481|ENST00000330459|KPNA2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	543.297507	1084.58046	-0.56171	-0.00030518	0.5069	0.0002754	-0.054813	-2.978E-05	543.2979216574756	98.749	0.56049	98.749	98.455	99.015	0	0.076798	0.00010882	NaN	34.932	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1595000			49473	8410	35981	36270							0.04155493900225338
SLIEQTTAL	9	Unmodified	_SLIEQTTAL_					0	0	0		ENST00000395941.4_1_12:27107091-27110700:+|nuORF;nc|ENSG00000111790|Q9NVK5-3|FGFR1OP2;nc|ENSG00000111790|Q9NVK5-2|FGFR1OP2;ENSG00000111790|ENST00000229395|FGFR1OP2	ENST00000395941.4_1_12:27107091-27110700:+|nuORF	ENST00000395941.4_1_12:27107091-27110700:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	975.864990234375	1	975.535703	974.528426	0.30836	0.00030081	-0.089205	-8.7023E-05	0.21915	0.00021379	975.5353937043974	82.424	0.55909	82.424	82.163	82.722	0					17	10	2	0	0	0	0.022401	1	30132	30132		89.401	47.561	1	4894900			49474	3029	35982	36271	48348	48348					0.040143304864727725
SLIEQTTAL	9	Unmodified	_SLIEQTTAL_					0	0	0		ENST00000395941.4_1_12:27107091-27110700:+|nuORF;nc|ENSG00000111790|Q9NVK5-3|FGFR1OP2;nc|ENSG00000111790|Q9NVK5-2|FGFR1OP2;ENSG00000111790|ENST00000229395|FGFR1OP2	ENST00000395941.4_1_12:27107091-27110700:+|nuORF	ENST00000395941.4_1_12:27107091-27110700:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	975.86376953125	1	975.535703	974.528426	-0.10613	-0.00010353	0.28965	0.00028256	0.18352	0.00017903	975.5358122009836	81.6	0.65562	82.343	81.979	82.634	0.74293					20	12	2	0	0	0	0.061442	1	31060	31060		72.968	27.268	1	4122200			49475	3029	35982	36271	48349	48349					0.040143304864727725
SLIERDLKL	9	Unmodified	_SLIERDLKL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	A375_MHC_IP_R1	1	363.2887268066406	3	362.888763	1085.64446	0.1626	5.9006E-05	-0.71369	-0.00025899	-0.55109	-0.00019999	362.88860233713484	60.662	0.50847	60.662	60.363	60.871	0					15	9	2	0	0	0	0.37338	1	21855	21855		26.021	4.4306	1	3270700			49476	5295	35983	36272	48350	48350					0.10506274057183873
SLIERDLKL	9	Unmodified	_SLIERDLKL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	A375_MHC_IP_R1	1	543.6119384765625	2	543.829506	1085.64446	-0.59259	-0.00032227	0.16285	8.8561E-05	-0.42975	-0.00023371	543.8295642077665	60.694	0.55956	60.694	60.363	60.922	0					16	10	2	0	0	0	0.23313	1	21853	21853		57.249	9.6547	1	4288600			49477	5295	35983	36272	48351	48351					0.10506274057183873
SLIERDLKL	9	Unmodified	_SLIERDLKL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	A375_MHC_IP_R2	2	363.28863525390625	3	362.888763	1085.64446	-0.47715	-0.00017315	-0.23529	-8.5385E-05	-0.71244	-0.00025854	362.88872319456993	59.733	0.45573	60.48	60.148	60.603	0.74714					18	8	3	0	0	0	0.14659	1	22593	22593		42.312	6.7002	1	4180000			49478	5295	35983	36272	48352	48352					0.10506274057183873
SLIESLPIE	9	Unmodified	_SLIESLPIE_					0	0	0			REV__ENSG00000184304|ENST00000331968|PRKD1	REV__ENSG00000184304|ENST00000331968|PRKD1	MULTI-MSMS	A375_MHC_IP_R2	2	1000.6516723632812	1	1000.5561	999.548827	-0.055904	-5.5935E-05	1.7408	0.0017418	1.6849	0.0016859	1000.555729238012	128.11	0.20377	128.36	128.26	128.46	0.25089					7	3	3	0	0	0	0.091096	1	50264	50264		52.268	0	1	4849100	+		49479	21806	35984	36273	48353	48353					0.049035011462819966
SLIEWRSQIL	10	Unmodified	_SLIEWRSQIL_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;nc|ENSG00000147459|Q9H7D0-2|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MSMS	A375_MHC_IP_R2	2	415.6463623046875	3	415.571434	1243.69247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.99	1	19.593	19.093	20.093	0.60308								0	0	0	0.14855	1	5746	5746		20.581	4.8423	1				49480	5684	35985	36274	48354	48354					0.08037347977233367
SLIEYIKQV	9	Unmodified	_SLIEYIKQV_					0	0	0		ENST00000546912.1_1_12:69260670-69264157:-|nuORF;ENSG00000135678|ENST00000551568|CPM	ENST00000546912.1_1_12:69260670-69264157:-|nuORF	ENST00000546912.1_1_12:69260670-69264157:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	547.2180786132812	2	546.818607	1091.62266	-0.69965	-0.00038258	0.27071	0.00014803	-0.42893	-0.00023455	546.8188307684768	91.648	0.55777	92.382	92.222	92.78	0.7345					15	10	3	0	0	0	0.59927	1	34917	34917		38.176	9.094	1	1334900			49481	4704	35986	36275	48355	48355					0.08051469308611559
SLIEYLHNA	9	Unmodified	_SLIEYLHNA_					0	0	0		ENST00000458725.5_1_13:50642253-50656006:-|nuORF	ENST00000458725.5_1_13:50642253-50656006:-|nuORF	ENST00000458725.5_1_13:50642253-50656006:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	530.6767578125	2	530.277106	1058.53966	-0.61013	-0.00032354	-0.039796	-2.1103E-05	-0.64992	-0.00034464	530.2769442760163	77.307	0.65797	78.05	77.707	78.365	0.74293					22	12	2	0	0	0	0.24324	1	29354	29354		53.833	17.706	1	3173800			49482	12150	35987	36276	48356	48356					0.012731525806202626
SLIFKLEEL	9	Unmodified	_SLIFKLEEL_					0	0	0		nc|ENSG00000080189|Q9NQQ7-2|SLC35C2;ENSG00000080189|ENST00000372230|SLC35C2;nc|ENSG00000080189|Q9NQQ7-3|SLC35C2	nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	MULTI-MSMS	A375_MHC_IP_R1	1	546.7206420898438	2	546.320983	1090.62741	-0.013905	-7.5966E-06	-0.29312	-0.00016014	-0.30702	-0.00016773	546.3207383632642	114.08	0.76373	114.08	113.6	114.36	0					23	14	2	0	0	0	0.038567	1	41848	41848		83.429	15.348	1	6831400			49483	1708	35988	36277	48357	48357					0.08572353451381787
SLIFTLGSFM	10	Unmodified	_SLIFTLGSFM_					0	0	0		ENST00000528098.5_1_11:57182763-57193651:-|nuORF;ENSG00000134802|ENST00000395124|SLC43A3;nc|ENSG00000134802|Q8NBI5-2|SLC43A3	ENST00000528098.5_1_11:57182763-57193651:-|nuORF	ENST00000528098.5_1_11:57182763-57193651:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	558.1658325195312	2	558.293911	1114.57327	-0.46463	-0.0002594	0.11015	6.1495E-05	-0.35448	-0.0001979	558.294013803627	101.34	0.45674	101.34	101.04	101.5	0					10	8	2	0	0	0	0.6806	1	37182	37182		14.838	0	1	504140			49484	4610	35989	36278	48358	48358					0.020564380281712147
SLIGEESIGIL	11	Unmodified	_SLIGEESIGIL_					0	0	0		tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	377.9476013183594	3	377.548295	1129.62306	0.19267	7.2744E-05	-1.0547	-0.00039818	-0.86198	-0.00032544	377.54790388426545	19.366	0.69068	19.366	19.238	19.928	0					23	13	2	0	0	0	0.9754	1	4844	4844		4.1166	4.1166	1	3732800			49485	29814	35990	36279	48359	48359					0.0634284423781537
SLIGHLQTL	9	Unmodified	_SLIGHLQTL_					0	0	0		ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	MULTI-MSMS	A375_MHC_IP_R1	1	491.6898193359375	2	491.290017	980.565481	-0.14563	-7.1546E-05	0.13168	6.4691E-05	-0.013954	-6.8552E-06	491.2900499914147	78.934	1.4273	78.934	78.556	79.983	0					69	27	4	0	0	0	0.0020209	2	28739	28739;28784		181.69	63.622	1	101150000			49486	4968	35991	36280	48360;48361	48360					0.07442046822893644
SLIGHLQTL	9	Unmodified	_SLIGHLQTL_					0	0	0		ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	MULTI-SECPEP	A375_MHC_IP_R2	2	491.6898498535156	2	491.290017	980.565481	-0.5251	-0.00025798	-0.082246	-4.0407E-05	-0.60735	-0.00029838	491.2899431727053	77.924	1.4273	78.667	78.315	79.743	0.74293					72	27	4	0	0	0	0.030244	1	29528	29528		96.936	26.604	1	73167000			49487	4968	35991	36280	48362	48362					0.07442046822893644
SLIGHLQTL	9	Unmodified	_SLIGHLQTL_					0	0	0		ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	MULTI-SECPEP	A375_MHC_IP_R2	2	980.8448486328125	1	981.572757	980.565481	-0.0014226	-1.3964E-06	-0.23216	-0.00022788	-0.23359	-0.00022928	981.5723515160073	77.925	0.35881	78.667	78.468	78.827	0.74293					12	6	2	0	0	0	0.72623	1	29600	29600		18.373	7.5492	1	3907900			49488	4968	35991	36280	48363	48363					0.07442046822893644
SLIGHLQTL	9	Unmodified	_SLIGHLQTL_					0	0	0		ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	MULTI-MATCH	A375_MHC_IP_R1	1		1	981.572757	980.565481	0.34221	0.0003359	0.21998	0.00021593	0.56219	0.00055183	981.5727777105669	78.865	0.40405	78.865	78.707	79.111	0	0.098786	0.00023699	NaN	18.373	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2649600			49489	4968	35991	36280							0.07442046822893644
SLIGHSARV	9	Unmodified	_SLIGHSARV_					0	0	0		ENSG00000119402|ENST00000608872|FBXW2;nc|ENSG00000119402|Q9UKT8-2|FBXW2	ENSG00000119402|ENST00000608872|FBXW2	ENSG00000119402|ENST00000608872|FBXW2	MULTI-MSMS	A375_MHC_IP_R2	2	470.6713562011719	2	470.272158	938.529764	-0.66767	-0.00031398	-0.38035	-0.00017887	-1.048	-0.00049285	470.27187628892926	128.39	2.0266	128.62	128.14	130.17	0.23946					92	39	4	0	0	0	0.65721	1	50356	50356		10.824	0	1	277270000			49490	3590	35992	36281	48364	48364					0.058040093658974
SLIGKRTR	8	Unmodified	_SLIGKRTR_					0	0	0			REV__ENSG00000226763|ENST00000417606|SRRM5	REV__ENSG00000226763|ENST00000417606|SRRM5	MULTI-SECPEP	A375_MHC_IP_R1	1	466.1955871582031	2	465.795801	929.577048	-0.51767	-0.00024113	-0.079711	-3.7129E-05	-0.59738	-0.00027826	465.7956516822276	134.9	1.6315	134.9	134.73	136.36	0					70	31	4	0	0	0	0.972	1	52009	52009		2.5775	0	1	103650000	+		49491	22725	35993	36282	48365	48365					0.10944288636881083
SLIGKRTR	8	Unmodified	_SLIGKRTR_					0	0	0			REV__ENSG00000226763|ENST00000417606|SRRM5	REV__ENSG00000226763|ENST00000417606|SRRM5	MULTI-MATCH	A375_MHC_IP_R2	2		2	465.795801	929.577048	-0.53377	-0.00024863	0.34099	0.00015883	-0.19278	-8.9796E-05	465.79584775859416	134.79	1.8321	134.92	134.75	136.58	0.13901	0.010195	0.00015797	NaN	2.5775	85	35	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73787000	+		49492	22725	35993	36282							0.10944288636881083
SLIGNLHLA	9	Unmodified	_SLIGNLHLA_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	A375_MHC_IP_R2	2	469.67626953125	2	469.276909	936.539266	-0.44724	-0.00020988	-1.5425	-0.00072384	-1.9897	-0.00093372	469.276710983506	85.539	0.50728	86.275	85.984	86.492	0.73602					17	9	3	0	0	0	0.098973	1	32533	32533		50.855	8.7605	1	2413500			49493	9310	35994	36283	48366	48366					0.0684577765140375
SLIGNLHLA	9	Unmodified	_SLIGNLHLA_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-MATCH	A375_MHC_IP_R1	1		2	469.276909	936.539266	-0.53331	-0.00025027	0.20124	9.4439E-05	-0.33207	-0.00015583	469.27692157272276	86.487	0.35455	86.487	86.274	86.629	0	0.10588	9.6237E-05	NaN	50.855	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1635800			49494	9310	35994	36283							0.0684577765140375
SLIGSVLGA	9	Unmodified	_SLIGSVLGA_					0	0	0		nc|ENSG00000164051|Q96ER9-2|CCDC51;ENSG00000164051|ENST00000395694|CCDC51	nc|ENSG00000164051|Q96ER9-2|CCDC51	nc|ENSG00000164051|Q96ER9-2|CCDC51	MULTI-SECPEP	A375_MHC_IP_R1	1	816.1157836914062	1	816.482545	815.475269	0.13806	0.00011273	1.0409	0.00084987	1.179	0.00096259	816.4822905678711	114	0.2574	114	113.85	114.11	0					6	4	2	0	0	0	0.096726	1	41772	41772		52.268	16.224	1	2253200			49495	6764	35995	36284	48367	48367					0.060149974944692985
SLIHELVGQ	9	Unmodified	_SLIHELVGQ_					0	0	0			REV__ENSG00000101003|ENST00000262460|GINS1	REV__ENSG00000101003|ENST00000262460|GINS1	MULTI-SECPEP	A375_MHC_IP_R1	1	498.6796875	2	498.279649	994.544745	-0.46186	-0.00023014	0.01654	8.2416E-06	-0.44532	-0.00022189	498.27964372463197	83.681	1.6781	83.681	83.226	84.904	0					91	32	5	0	0	0	0.027983	1	30549	30549		103.75	28.819	1	96639000	+		49496	17138	35996	36285	48368	48368					0.04725456443236453
SLIHELVGQ	9	Unmodified	_SLIHELVGQ_					0	0	0			REV__ENSG00000101003|ENST00000262460|GINS1	REV__ENSG00000101003|ENST00000262460|GINS1	MULTI-MSMS	A375_MHC_IP_R2	2	498.6794128417969	2	498.279649	994.544745	-0.5288	-0.00026349	-0.10964	-5.4632E-05	-0.63844	-0.00031812	498.279564402913	82.678	1.8807	83.421	83.042	84.923	0.74293					96	36	5	0	0	0	0.0098409	1	31331	31331		115.69	47.611	1	117520000	+		49497	17138	35996	36285	48369	48369					0.04725456443236453
SLIHELVGQ	9	Unmodified	_SLIHELVGQ_					0	0	0			REV__ENSG00000101003|ENST00000262460|GINS1	REV__ENSG00000101003|ENST00000262460|GINS1	MULTI-SECPEP	A375_MHC_IP_R2	2	498.6792297363281	2	498.279649	994.544745	-0.5288	-0.00026349	-0.10964	-5.4632E-05	-0.63844	-0.00031812	498.279564402913	82.678	1.8807	83.421	83.042	84.923	0.74293					96	36	5	0	0	0	0.047455	1	31553	31553		78.149	32.128	1	117520000	+		49498	17138	35996	36285	48370	48370					0.04725456443236453
SLIHNAPGPA	10	Unmodified	_SLIHNAPGPA_					0	0	0		CATSPER1|p.D337N|1|0.35|ENSG00000175294|chr11:66025371-66025371|C/T|missense_variant	CATSPER1|p.D337N|1|0.35|ENSG00000175294|chr11:66025371-66025371|C/T|missense_variant	CATSPER1|p.D337N|1|0.35|ENSG00000175294|chr11:66025371-66025371|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	488.677490234375	2	488.764166	975.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.029	1	51.029	50.529	51.529	0								0	0	0	0.15158	1	18100	18100		14.838	2.3067	1				49499	299	35997	36286	48371	48371					0.025043031289897044
SLIIMLRIWR	10	Unmodified	_SLIIMLRIWR_					0	0	0		ENST00000561302.5_1_15:76430142-76521275:+|nuORF;nc|ENSG00000169758|Q2M3C6-2|TMEM266;ENSG00000169758|ENST00000388942|TMEM266	ENST00000561302.5_1_15:76430142-76521275:+|nuORF	ENST00000561302.5_1_15:76430142-76521275:+|nuORF	MSMS	A375_MHC_IP_R2	2	650.7842407226562	2	650.899743	1299.78493	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.93	1	126.23	125.73	126.73	0.2951								0	0	0	0.15531	1	49205	49205		3.5965	0	1				49500	7435	35998	36287	48372	48372					0.147031545097434
SLIINTNPV	9	Unmodified	_SLIINTNPV_					0	0	0		ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENST00000504558.1_1_5:75967701-75969415:+|nuORF;ENST00000512383.1_1_5:75964652-75969784:+|nuORF	ENSG00000145703|ENST00000274364|IQGAP2	ENSG00000145703|ENST00000274364|IQGAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	486.15277099609375	2	485.782025	969.549496	-0.29502	-0.00014332	0.38577	0.0001874	0.090748	4.4084E-05	485.782138797329	81.259	0.4055	81.259	80.948	81.353	0					10	7	2	0	0	0	0.69504	1	29611	29611		7.9102	1.187	1	1226400			49501	5571	35999	36288	48373	48373					0.06350340586004677
SLIIRRKPLFY	11	Unmodified	_SLIIRRKPLFY_					0	0	0		ENST00000572438.1_1_17:4802033-4804946:-|nuORF;ENSG00000108556|ENST00000649488|CHRNE	ENST00000572438.1_1_17:4802033-4804946:-|nuORF	ENST00000572438.1_1_17:4802033-4804946:-|nuORF	MSMS	A375_MHC_IP_R2	2	703.075927734375	2	703.437547	1404.86054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.974	1	67.71	67.21	68.21	0.73631								0	0	0	0.16297	1	25373	25373		3.2813	1.7994	1				49502	2812	36000	36289	48374	48374					0.17430454961686337
SLIKFFPSILP	11	Unmodified	_SLIKFFPSILP_					0	0	0		ENSG00000110756|ENST00000349215|HPS5;nc|ENSG00000110756|Q9UPZ3-2|HPS5;ENST00000352460.7_1_11:18303495-18317646:-|nuORF	ENSG00000110756|ENST00000349215|HPS5	ENSG00000110756|ENST00000349215|HPS5	MSMS	A375_MHC_IP_R2	2	631.3802490234375	2	631.381374	1260.7482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.88	1	120.41	119.91	120.91	0.5321								0	0	0	0.1628	1	45692	45692		8.1555	3.6267	1				49503	2946	36001	36290	48375	48375					0.12825181164839705
SLIKKKKKQIK	11	Unmodified	_SLIKKKKKQIK_					0	0	0			REV__ENSG00000196476|ENST00000360321|C20orf96	REV__ENSG00000196476|ENST00000360321|C20orf96	MSMS	A375_MHC_IP_R2	2	671.4964599609375	2	671.468847	1340.92314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.77	1	124.1	123.6	124.6	0.32969								0	0	0	0.16302	1	47677	47677		2.9952	1.8019	1		+		49504	22200	36002	36291	48376	48376					0.26631601029862395
SLIKKKQKKK	10	Unmodified	_SLIKKKQKKK_					0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	MSMS	A375_MHC_IP_R2	2	614.9266357421875	2	614.926815	1227.83908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.73	1	120.26	119.76	120.76	0.5321								0	0	0	0.15591	1	45625	45625		1.6526	0	1		+		49505	21936	36003	36292	48377	48377					0.234270699329727
SLIKQIPRI	9	Unmodified	_SLIKQIPRI_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	A375_MHC_IP_R1	1	356.9693908691406	3	356.569365	1066.68626	0.015231	5.4309E-06	-0.091857	-3.2753E-05	-0.076626	-2.7322E-05	356.5692716117694	60.424	0.66132	60.424	60.159	60.821	0					34	12	3	0	0	0	0.21241	1	21745	21745		37.075	16.494	1	10377000			49506	9318	36004	36293	48378	48378					0.1555887453635023
SLIKQIPRI	9	Unmodified	_SLIKQIPRI_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-SECPEP	A375_MHC_IP_R1	1	534.7499389648438	2	534.350409	1066.68626	-0.68202	-0.00036444	0.20651	0.00011035	-0.47551	-0.00025409	534.3503578316463	60.484	0.66113	60.484	60.21	60.871	0					24	12	4	0	0	0	0.24324	1	21761	21761		53.833	26.204	1	5011600			49507	9318	36004	36293	48379	48379					0.1555887453635023
SLIKQIPRI	9	Unmodified	_SLIKQIPRI_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	A375_MHC_IP_R2	2	356.96893310546875	3	356.569365	1066.68626	-0.61027	-0.0002176	0.15177	5.4117E-05	-0.4585	-0.00016349	356.56936400856506	59.447	0.75845	60.195	59.845	60.603	0.74714					35	14	4	0	0	0	0.04699	1	22459	22459		65.474	33.436	1	12567000			49508	9318	36004	36293	48380	48380					0.1555887453635023
SLIKQIPRI	9	Unmodified	_SLIKQIPRI_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-SECPEP	A375_MHC_IP_R2	2	534.7500610351562	2	534.350409	1066.68626	-1.1825	-0.00063187	0.17038	9.1043E-05	-1.0121	-0.00054083	534.350468507337	59.47	0.60526	60.217	59.896	60.501	0.74714					21	11	3	0	0	0	0.49205	1	22480	22480		34.402	10.381	1	4491300			49509	9318	36004	36293	48381	48381					0.1555887453635023
SLILAAFVIFY	11	Unmodified	_SLILAAFVIFY_					0	0	0		L1M2_dup7611|chr14:24653459-24654370:-|1.151408618654957|0.0312555534371492|5.2|438.0|46|2|anti-sense	L1M2_dup7611|chr14:24653459-24654370:-|1.151408618654957|0.0312555534371492|5.2|438.0|46|2|anti-sense	L1M2_dup7611|chr14:24653459-24654370:-|1.151408618654957|0.0312555534371492|5.2|438.0|46|2|anti-sense	MSMS	A375_MHC_IP_R2	2	629.069091796875	2	628.8681	1255.72165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.618	1	67.354	66.854	67.854	0.73631								0	0	0	0.1624	1	25239	25239		6.2058	0.47393	1				49510	14249	36005	36294	48382	48382					0.10401492273513213
SLILKIILTLW	11	Unmodified	_SLILKIILTLW_					0	0	0			REV__KCNK17|p.A257T|1|0.19|ENSG00000124780|chr6:39299657-39299657|C/T|missense_variant	REV__KCNK17|p.A257T|1|0.19|ENSG00000124780|chr6:39299657-39299657|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	656.9578247070312	2	656.933774	1311.853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.544	1	99.544	99.044	100.04	0								0	0	0	0.16297	1	36570	36570		3.2813	1.6287	1		+		49511	26831	36006	36295	48383	48383					0.2095430264141669
SLILRRKAFFL	11	Unmodified	_SLILRRKAFFL_					0	0	0		ENST00000231368.9_1_5:96365570-96365711:+|nuORF	ENST00000231368.9_1_5:96365570-96365711:+|nuORF	ENST00000231368.9_1_5:96365570-96365711:+|nuORF	MSMS	A375_MHC_IP_R1	1	682.4337158203125	2	682.432264	1362.84998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.056	1	94.056	93.556	94.556	0								0	0	0	0.16334	1	34571	34571		1.3295	0	1				49512	10145	36007	36296	48384	48384					0.18306472307244803
SLILTFLWRNS	11	Unmodified	_SLILTFLWRNS_					0	0	0		ENST00000371027.5_1_10:99025700-99025853:-|nuORF	ENST00000371027.5_1_10:99025700-99025853:-|nuORF	ENST00000371027.5_1_10:99025700-99025853:-|nuORF	MSMS	A375_MHC_IP_R2	2	675.4677734375	2	675.382437	1348.75032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.954	1	99.714	99.214	100.21	0.75977								0	0	0	0.16213	1	37537	37537		7.609	1.8771	1				49513	11162	36008	36297	48385	48385					0.0898960990264186
SLINRLRERRE	11	Unmodified	_SLINRLRERRE_					0	0	0			REV__ENSG00000136875|ENST00000374198|PRPF4	REV__ENSG00000136875|ENST00000374198|PRPF4	MULTI-SECPEP	A375_MHC_IP_R2	2	481.2005310058594	3	481.283057	1440.82734	-0.56052	-0.00026977	1.085	0.00052221	0.52451	0.00025244	481.28343370782994	131.05	0.4576	131.27	131.11	131.57	0.21419					13	8	2	0	0	0	0.99838	1	51608	51608		0.29564	0.21229	1	2225500	+		49514	18966	36009	36298	48386	48386					0.1245622117169205
SLINVGLISV	10	Unmodified	_SLINVGLISV_					0	0	0		nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B;ENST00000473205.1_1_9:100746884-100764563:+|nuORF;ENST00000564205.1_1_15:75614457-75614928:-|nuORF	nc|ENSG00000136938|Q92688-2|ANP32B	nc|ENSG00000136938|Q92688-2|ANP32B	MULTI-SECPEP	A375_MHC_IP_R2	2	508.2121276855469	2	507.813325	1013.6121	-0.76894	-0.00039048	0.060685	3.0817E-05	-0.70826	-0.00035966	507.8133322536327	129.86	0.40414	130.07	129.94	130.35	0.2142					15	7	3	0	0	0	1.4482E-08	1	51037	51037		226.55	70.598	1	54770000			49515	4845	36010	36299	48387	48387					0.1058348665419544
SLIPIISGV	9	Unmodified	_SLIPIISGV_					0	0	0		ENSG00000127526|ENST00000595753|SLC35E1;nc|ENSG00000127526|Q96K37-3|SLC35E1;ENST00000488894.1_1_19:16677303-16683001:-|nuORF	ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	MULTI-SECPEP	A375_MHC_IP_R2	2	898.2374877929688	1	898.560795	897.553519	-0.48217	-0.00043326	-0.45655	-0.00041024	-0.93872	-0.0008435	898.5603703880143	129.15	0.35388	129.39	129.26	129.62	0.23946					12	6	3	0	0	0	0.027983	1	50743	50743		103.75	18.392	1	43621000			49516	4095	36011	36300	48388	48388					0.10064430079728481
SLIPNLRNV	9	Unmodified	_SLIPNLRNV_					0	0	0		nc|ENSG00000130164|P01130-2|LDLR;nc|ENSG00000130164|P01130-3|LDLR;nc|ENSG00000130164|P01130-6|LDLR;nc|ENSG00000130164|P01130-4|LDLR;nc|ENSG00000130164|P01130-5|LDLR;ENSG00000130164|ENST00000558518|LDLR;ENST00000560173.1_1_19:11221401-11224126:+|nuORF	nc|ENSG00000130164|P01130-2|LDLR	nc|ENSG00000130164|P01130-2|LDLR	MULTI-MSMS	A375_MHC_IP_R1	1	513.7081909179688	2	513.308741	1024.60293	-0.62492	-0.00032077	0.096117	4.9338E-05	-0.5288	-0.00027144	513.30876609704	80.821	1.0652	80.821	80.441	81.506	0					54	20	4	0	0	0	0.17338	1	29467	29467		39.95	5.8473	1	39312000			49517	4225	36012	36301	48389	48389					0.0916113808850696
SLIPNLRNV	9	Unmodified	_SLIPNLRNV_					0	0	0		nc|ENSG00000130164|P01130-2|LDLR;nc|ENSG00000130164|P01130-3|LDLR;nc|ENSG00000130164|P01130-6|LDLR;nc|ENSG00000130164|P01130-4|LDLR;nc|ENSG00000130164|P01130-5|LDLR;ENSG00000130164|ENST00000558518|LDLR;ENST00000560173.1_1_19:11221401-11224126:+|nuORF	nc|ENSG00000130164|P01130-2|LDLR	nc|ENSG00000130164|P01130-2|LDLR	MULTI-SECPEP	A375_MHC_IP_R2	2	513.7081298828125	2	513.308741	1024.60293	-0.71647	-0.00036777	-0.44337	-0.00022759	-1.1598	-0.00059536	513.3085043491917	79.888	1.1163	80.632	80.249	81.365	0.74474					53	21	3	0	0	0	0.41434	1	30264	30264		39.95	1.9757	1	30265000			49518	4225	36012	36301	48390	48390					0.0916113808850696
SLIPTSPQV	9	Unmodified	_SLIPTSPQV_					0	0	0		ENSG00000179134|ENST00000610417|SAMD4B	ENSG00000179134|ENST00000610417|SAMD4B	ENSG00000179134|ENST00000610417|SAMD4B	MULTI-MSMS	A375_MHC_IP_R2	2	471.19464111328125	2	471.26875	940.522947	-0.47961	-0.00022603	-0.11791	-5.5565E-05	-0.59752	-0.00028159	471.2687197624091	84.608	1.4245	85.344	84.916	86.341	0.73602					61	27	4	0	0	0	0.14922	1	32437	32437		41.84	1.8823	1	27599000			49519	8207	36013	36302	48391	48391					0.05030651694664812
SLIQEQEELSF	11	Unmodified	_SLIQEQEELSF_					0	0	0			REV__ENST00000592267.1_1_17:43342005-43351146:-|nuORF	REV__ENST00000592267.1_1_17:43342005-43351146:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	441.1513671875	3	441.553997	1321.64016	-0.45644	-0.00020154	0.76135	0.00033618	0.30491	0.00013463	441.55436412064404	55.258	0.86476	56.009	55.523	56.388	0.75075					37	16	3	0	0	0	0.99847	1	20692	20692		5.0475	0.85802	1	3977200	+		49520	16130	36014	36303	48392	48392					-0.007792799470507816
SLIQHQALF	9	Unmodified	_SLIQHQALF_					0	0	0		ENSG00000187823|ENST00000695839|RTL4	ENSG00000187823|ENST00000695839|RTL4	ENSG00000187823|ENST00000695839|RTL4	MULTI-SECPEP	A375_MHC_IP_R1	1	353.2659606933594	3	352.86607	1055.57638	0.066973	2.3633E-05	-0.38553	-0.00013604	-0.31856	-0.00011241	352.8658685325677	35.838	0.35659	35.838	35.676	36.033	0					11	6	2	0	0	0	0.67483	1	11983	11983		14.405	0	1	3910800			49521	8861	36015	36304	48393	48393					0.050814491971550524
SLIREIEIK	9	Unmodified	_SLIREIEIK_					0	0	0			REV__ENSG00000157483|ENST00000288235|MYO1E	REV__ENSG00000157483|ENST00000288235|MYO1E	MULTI-SECPEP	A375_MHC_IP_R2	2	551.207275390625	2	550.837331	1099.66011	-1.0511	-0.00057896	-0.68927	-0.00037968	-1.7403	-0.00095864	550.8369387638561	61.904	0.30273	62.647	62.471	62.774	0.74263					9	5	2	0	0	0	0.59614	1	23485	23485		17.443	0	1	1529700	+		49522	20032	36016	36305	48394	48394					0.11426560574227551
SLIRGLRRW	9	Unmodified	_SLIRGLRRW_					0	0	0			REV__ENST00000535606.1_1_12:32112753-32113746:+|nuORF	REV__ENST00000535606.1_1_12:32112753-32113746:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	385.9486389160156	3	386.240241	1155.69889	-0.31765	-0.00012269	0.2848	0.00011	-0.032846	-1.2687E-05	386.24025813518784	54.697	0.30551	55.448	55.269	55.575	0.75075					7	5	2	0	0	0	0.77948	1	20578	20578		3.8763	3.8763	1	622940	+		49523	25905	36017	36306	48395	48395					0.12727330719280872
SLIRIVPVV	9	Unmodified	_SLIRIVPVV_					0	0	0		ENSG00000143970|ENST00000435504|ASXL2;nc|ENSG00000143970|Q76L83-2|ASXL2	ENSG00000143970|ENST00000435504|ASXL2	ENSG00000143970|ENST00000435504|ASXL2	MULTI-MSMS	A375_MHC_IP_R1	1	498.7345275878906	2	498.334227	994.653902	-0.33416	-0.00016652	0.31838	0.00015866	-0.015785	-7.8661E-06	498.33438165690916	102.58	0.55636	102.58	102.3	102.86	0					24	10	3	0	0	0	0.16945	1	37688	37688		40.239	7.4535	1	3078600			49524	5452	36018	36307	48396	48396					0.15636087133373167
SLIRIVPVV	9	Unmodified	_SLIRIVPVV_					0	0	0		ENSG00000143970|ENST00000435504|ASXL2;nc|ENSG00000143970|Q76L83-2|ASXL2	ENSG00000143970|ENST00000435504|ASXL2	ENSG00000143970|ENST00000435504|ASXL2	MULTI-SECPEP	A375_MHC_IP_R2	2	498.7337341308594	2	498.334227	994.653902	-0.43541	-0.00021698	0.03898	1.9425E-05	-0.39643	-0.00019755	498.33420082764263	101.53	0.45575	102.29	102.06	102.51	0.76428					15	8	2	0	0	0	0.23894	1	38484	38484		47.594	13.193	1	3025400			49525	5452	36018	36307	48397	48397					0.15636087133373167
SLIRPVSSPV	10	Unmodified	_SLIRPVSSPV_					0	0	0		PLCE1|p.P1167L|1|0.18|ENSG00000138193|chr10:94254995-94254995|C/T|missense_variant	PLCE1|p.P1167L|1|0.18|ENSG00000138193|chr10:94254995-94254995|C/T|missense_variant	PLCE1|p.P1167L|1|0.18|ENSG00000138193|chr10:94254995-94254995|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	528.2159423828125	2	527.816399	1053.61824	-0.56322	-0.00029728	-0.4287	-0.00022627	-0.99192	-0.00052355	527.8160788847804	44.563	0.40538	45.332	45.138	45.543	0.76909					12	7	2	0	0	0	0.85226	1	16635	16635		14.838	1.7958	1	2178200			49526	15195	36019	36308	48398	48398					0.09358004885712035
SLIRREARL	9	Unmodified	_SLIRREARL_					0	0	0			REV__ENSG00000105219|ENST00000430325|CCNP	REV__ENSG00000105219|ENST00000430325|CCNP	MULTI-MSMS	A375_MHC_IP_R2	2	372.275634765625	3	371.899885	1112.67783	0.51193	0.00019039	2.7634	0.0010277	3.2754	0.0012181	371.90059544198203	63.781	1.1173	64.521	63.682	64.8	0.74022					35	21	3	0	0	0	0.72761	1	24018	24018		4.5289	1.4566	1	4649000	+		49527	17361	36020	36309	48399	48399					0.1259932061973359
SLIRSVVAL	9	Unmodified	_SLIRSVVAL_					0	0	0		ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	MULTI-SECPEP	A375_MHC_IP_R2	2	479.7078552246094	2	479.30821	956.601866	-0.44588	-0.00021372	-0.12312	-5.9013E-05	-0.569	-0.00027273	479.3080831710589	84.616	0.65985	85.352	85.069	85.729	0.73601					25	12	3	0	0	0	0.40377	1	32148	32148		41.956	3.9816	1	4266300			49528	2412	36021	36310	48400	48400					0.12182923719615246
SLISAGKGVFV	11	Unmodified	_SLISAGKGVFV_					0	0	0		SETD9|p.K193Tfs*2|1|0.07|ENSG00000155542|chr5:56913120-56913121|-/ACATG|frameshift_variant;nc|ENSG00000155542|Q8NE22-2|SETD9;ENSG00000155542|ENST00000285947|SETD9;ENST00000475908.5_1_5:56205193-56212726:+|nuORF	SETD9|p.K193Tfs*2|1|0.07|ENSG00000155542|chr5:56913120-56913121|-/ACATG|frameshift_variant	SETD9|p.K193Tfs*2|1|0.07|ENSG00000155542|chr5:56913120-56913121|-/ACATG|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	360.26220703125	3	359.881608	1076.623	-0.45031	-0.00016206	1.1333	0.00040785	0.68299	0.0002458	359.8818903116253	49.901	0.71134	50.656	50.244	50.955	0.75406					30	13	3	0	0	0	0.73078	1	18683	18683		4.1166	0	1	5120100			49529	6147	36022	36311	48401	48401					0.08774889028472899
SLISGIIRA	9	Unmodified	_SLISGIIRA_					0	0	0		nc|ENSG00000119392|Q53GS7-2|GLE1;ENSG00000119392|ENST00000309971|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	MULTI-MSMS	A375_MHC_IP_R1	1	465.69244384765625	2	465.292559	928.570566	-0.42225	-0.00019647	-0.24417	-0.00011361	-0.66642	-0.00031008	465.2924003872757	84.316	0.65683	84.316	84.041	84.697	0					24	12	3	0	0	0	0.029064	1	30850	30850		75.761	10.526	1	6180400			49530	3587	36023	36312	48402	48402					0.10342350685516521
SLISGIIRA	9	Unmodified	_SLISGIIRA_					0	0	0		nc|ENSG00000119392|Q53GS7-2|GLE1;ENSG00000119392|ENST00000309971|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	MULTI-MSMS	A375_MHC_IP_R2	2	465.69219970703125	2	465.292559	928.570566	-0.61273	-0.0002851	-0.25008	-0.00011636	-0.8628	-0.00040146	465.29241860761107	83.344	0.5085	84.084	83.797	84.305	0.73962					22	9	3	0	0	0	0.06083	1	31643	31643		60.074	6.2411	1	4747500			49531	3587	36023	36312	48403	48403					0.10342350685516521
SLISRAEF	8	Unmodified	_SLISRAEF_					0	0	0		nc|ENSG00000087085|P22303-4|ACHE;ENSG00000087085|ENST00000241069|ACHE;nc|ENSG00000087085|P22303-2|ACHE	nc|ENSG00000087085|P22303-4|ACHE	nc|ENSG00000087085|P22303-4|ACHE	MULTI-SECPEP	A375_MHC_IP_R1	1	462.1535339355469	2	461.753267	921.491981	-0.11338	-5.2354E-05	0.13611	6.2847E-05	0.022724	1.0493E-05	461.75331687863	56.453	0.50697	56.453	56.194	56.701	0					15	9	2	0	0	0	0.94587	1	20228	20228		6.2058	0	1	2680600			49532	1853	36024	36313	48404	48404					0.028094983804294316
SLISRAEF	8	Unmodified	_SLISRAEF_					0	0	0		nc|ENSG00000087085|P22303-4|ACHE;ENSG00000087085|ENST00000241069|ACHE;nc|ENSG00000087085|P22303-2|ACHE	nc|ENSG00000087085|P22303-4|ACHE	nc|ENSG00000087085|P22303-4|ACHE	MULTI-SECPEP	A375_MHC_IP_R2	2	462.15325927734375	2	461.753267	921.491981	-0.56063	-0.00025887	0.86807	0.00040084	0.30744	0.00014196	461.7535825447271	55.562	0.71014	56.312	55.881	56.591	0.75075					22	13	2	0	0	0	0.95424	1	21015	21015		9.3831	2.66	1	3360200			49533	1853	36024	36313	48405	48405					0.028094983804294316
SLISSKLTIA	10	Unmodified	_SLISSKLTIA_					0	0	0		ENST00000526696.6_1_11:57100962-57101998:-|nuORF	ENST00000526696.6_1_11:57100962-57101998:-|nuORF	ENST00000526696.6_1_11:57100962-57101998:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	517.1892700195312	2	516.818607	1031.62266	-0.68748	-0.0003553	0.40002	0.00020674	-0.28746	-0.00014856	516.81874289694	80.72	0.50724	80.72	80.492	80.999	0					26	9	4	0	0	0	0.62001	1	29470	29470		40.239	4.1122	1	10167000			49534	13086	36025	36314	48406	48406					0.108114693086236
SLISSVSIV	9	Unmodified	_SLISSVSIV_					0	0	0			REV__ENST00000359358.8_1_18:30253844-30254171:-|nuORF	REV__ENST00000359358.8_1_18:30253844-30254171:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	903.7760620117188	1	904.534975	903.527698	-0.20785	-0.00018801	-3.8502	-0.0034827	-4.0581	-0.0036707	904.5358971100162	129.03	0.25638	129.03	128.84	129.09	0					14	4	5	0	0	0	0.3607	1	49609	49609		26.884	5.137	1	21296000	+		49535	23874	36026	36315	48407	48407					0.07207535837437717
SLISTILEV	9	Unmodified	_SLISTILEV_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-SECPEP	A375_MHC_IP_R1	1	974.1337280273438	1	974.576839	973.569563	-0.11026	-0.00010746	-0.22411	-0.00021841	-0.33437	-0.00032587	974.5765620907833	132.41	0.61072	132.41	132.23	132.84	0					24	11	4	0	0	0	0.011321	1	51071	51071		123.45	23.079	1	82625000			49536	4853	36027	36316	48408	48408					0.08172091525955238
SLISTILEV	9	Unmodified	_SLISTILEV_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MATCH	A375_MHC_IP_R2	2		1	974.576839	973.569563	0.004032	3.9295E-06	-0.30773	-0.0002999	-0.3037	-0.00029597	974.5764377364002	132.19	0.40552	132.38	132.1	132.51	0.18953	-0.015646	-5.7332E-05	NaN	123.45	18	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43624000			49537	4853	36027	36316							0.08172091525955238
SLISTYFHV	9	Unmodified	_SLISTYFHV_					0	0	0		ENST00000336838.10_1_2:55646279-55646603:-|nuORF	ENST00000336838.10_1_2:55646279-55646603:-|nuORF	ENST00000336838.10_1_2:55646279-55646603:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	534.1824340820312	2	533.782025	1065.5495	-0.41187	-0.00021985	0.46126	0.00024621	0.049394	2.6366E-05	533.7820740350968	107.88	0.5582	107.88	107.6	108.15	0					20	10	3	0	0	0	0.089948	1	39580	39580		60.39	18.295	1	3564400			49538	10823	36028	36317	48409	48409					0.019343405859899576
SLISTYFHV	9	Unmodified	_SLISTYFHV_					0	0	0		ENST00000336838.10_1_2:55646279-55646603:-|nuORF	ENST00000336838.10_1_2:55646279-55646603:-|nuORF	ENST00000336838.10_1_2:55646279-55646603:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	534.181396484375	2	533.782025	1065.5495	-0.82852	-0.00044225	-0.21949	-0.00011716	-1.048	-0.00055941	533.7818650524157	106.91	0.55776	107.67	107.39	107.95	0.75977					14	10	2	0	0	0	0.14105	1	40420	40420		60.39	18.295	1	3806000			49539	10823	36028	36317	48410	48410					0.019343405859899576
SLITDRITI	9	Unmodified	_SLITDRITI_					0	0	0		USH2A|p.P2425R|1|0.19|ENSG00000042781|chr1:215934642-215934642|G/C|missense_variant	USH2A|p.P2425R|1|0.19|ENSG00000042781|chr1:215934642-215934642|G/C|missense_variant	USH2A|p.P2425R|1|0.19|ENSG00000042781|chr1:215934642-215934642|G/C|missense_variant	MSMS	A375_MHC_IP_R1	1	516.1976318359375	2	516.308406	1030.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.447	1	77.447	76.947	77.947	0								0	0	0	0.066662	1	28253	28253		49.933	2.1843	1				49540	30123	36029	36318	48411	48411					0.0881829864881638
SLITEIWHF	9	Unmodified	_SLITEIWHF_					0	0	0			REV__nc|ENSG00000110080|Q11206-7|ST3GAL4	REV__nc|ENSG00000110080|Q11206-7|ST3GAL4	MULTI-SECPEP	A375_MHC_IP_R2	2	573.7255859375	2	573.303124	1144.5917	-0.14	-8.0263E-05	-1.1101	-0.0006364	-1.2501	-0.00071666	573.8034875980807	101.32	0.76208	102.09	101.7	102.46	0.76428					24	14	2	0	0	0	0.71541	1	38446	38446		16.942	0	1	2479700	+		49541	17616	36030	36319	48412	48412					0.025183159943708233
SLITLIEKV	9	Unmodified	_SLITLIEKV_					0	0	0		nc|ENSG00000108582|O75976-2|CPD;ENSG00000108582|ENST00000225719|CPD;CPD|p.N755Lfs*3|1|0.17|ENSG00000108582|chr17:30442339-30442340|AA/-|frameshift_variant	nc|ENSG00000108582|O75976-2|CPD	nc|ENSG00000108582|O75976-2|CPD	MULTI-MSMS	A375_MHC_IP_R1	1	508.7239074707031	2	508.323525	1014.6325	-0.032191	-1.6363E-05	-0.41147	-0.00020916	-0.44366	-0.00022552	508.3232844121123	115.7	0.71214	115.7	115.38	116.09	0					32	13	3	0	0	0	0.0020209	1	42367	42367		143.91	36.722	1	24921000			49542	2817	36031	36320	48413	48413					0.1257665731400266
SLITLIEKV	9	Unmodified	_SLITLIEKV_					0	0	0		nc|ENSG00000108582|O75976-2|CPD;ENSG00000108582|ENST00000225719|CPD;CPD|p.N755Lfs*3|1|0.17|ENSG00000108582|chr17:30442339-30442340|AA/-|frameshift_variant	nc|ENSG00000108582|O75976-2|CPD	nc|ENSG00000108582|O75976-2|CPD	MULTI-MSMS	A375_MHC_IP_R2	2	508.72296142578125	2	508.323525	1014.6325	-0.5434	-0.00027622	0.07768	3.9486E-05	-0.46572	-0.00023674	508.3234623375466	114.46	0.86694	115.17	114.88	115.75	0.70984					42	16	4	0	0	0	0.0020209	1	43131	43131		143.91	25.014	1	18784000			49543	2817	36031	36320	48414	48414					0.1257665731400266
SLITRLLEV	9	Unmodified	_SLITRLLEV_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENST00000464273.1_1_2:28974903-28999853:+|nuORF	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-SECPEP	A375_MHC_IP_R1	1	522.72607421875	2	522.326599	1042.63865	-0.96239	-0.00050268	0.083834	4.3789E-05	-0.87855	-0.00045889	522.3266267970051	122.15	0.55808	122.15	121.92	122.48	0					21	10	3	0	0	0	0.018833	1	45406	45406		107.56	24.135	1	50487000			49544	9575	36032	36321	48415	48415					0.11903175545512568
SLITRLLEV	9	Unmodified	_SLITRLLEV_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENST00000464273.1_1_2:28974903-28999853:+|nuORF	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	A375_MHC_IP_R2	2	522.7257080078125	2	522.326599	1042.63865	-0.57521	-0.00030045	-0.53109	-0.0002774	-1.1063	-0.00057785	522.3262630883875	120.95	0.50514	121.39	121.17	121.67	0.44488					20	9	3	0	0	0	0.0024528	2	46178	46178;46228		139.78	56.353	1	177370000			49545	9575	36032	36321	48416;48417	48416					0.11903175545512568
SLITSYQPFS	10	Unmodified	_SLITSYQPFS_					0	0	0		ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	MULTI-SECPEP	A375_MHC_IP_R2	2	571.6631469726562	2	571.790047	1141.56554	-0.64852	-0.00037082	-0.041165	-2.3538E-05	-0.68968	-0.00039435	571.7900126088186	52.155	0.76156	52.907	52.574	53.336	0.75225					25	14	2	0	0	0	0.83355	1	19628	19628		22.736	13.991	1	11923000			49546	1099	36033	36322	48418	48418					0.0004200203222808341
SLITYCHV	8	Carbamidomethyl (C)	_SLITYC(Carbamidomethyl (C))HV_	SLITYC(1)HV		SLITYC(64)HV		0	1	0		ENST00000512653.5_1_1:179076842-179076932:-|nuORF	ENST00000512653.5_1_1:179076842-179076932:-|nuORF	ENST00000512653.5_1_1:179076842-179076932:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	497.1473083496094	2	496.747127	991.479702	-0.26997	-0.00013411	0.58308	0.00028964	0.31311	0.00015554	496.7473301566723	114.01	0.55069	114.72	114.43	114.98	0.70985					18	10	2	0	0	0	0.24409	2	42994	42994;43048		63.563	16.642	1	5168000			49547	12920	36034	36323	48419;48420	48419	61				-0.01637861354265624
SLITYCHV	8	Carbamidomethyl (C)	_SLITYC(Carbamidomethyl (C))HV_					0	1	0		ENST00000512653.5_1_1:179076842-179076932:-|nuORF	ENST00000512653.5_1_1:179076842-179076932:-|nuORF	ENST00000512653.5_1_1:179076842-179076932:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	496.747127	991.479702	0.063032	3.1311E-05	1.1304	0.00056154	1.1935	0.00059285	496.7476406291491	114.88	0.60522	114.88	114.57	115.17	0	0.076547	0.00015361	NaN	63.563	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6568500			49548	12920	36034	36323			61				-0.01637861354265624
SLIVLEPLKLS	11	Unmodified	_SLIVLEPLKLS_					0	0	0			REV__ENST00000538014.2_1_Y:21731342-21750365:+|nuORF	REV__ENST00000538014.2_1_Y:21731342-21750365:+|nuORF	MSMS	A375_MHC_IP_R1	1	606.667724609375	2	606.384114	1210.75368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.343	1	91.343	90.843	91.843	0								0	0	0	0.16307	1	33561	33561		2.7352	0	1		+		49549	25932	36035	36324	48421	48421					0.15672859956634966
SLIWGAPLL	9	Unmodified	_SLIWGAPLL_					0	0	0			REV__ENSG00000176340|ENST00000314133|COX8A	REV__ENSG00000176340|ENST00000314133|COX8A	MULTI-MSMS	A375_MHC_IP_R2	2	485.3012390136719	2	485.292028	968.569503	-0.51904	-0.00025189	-1.0796	-0.00052394	-1.5987	-0.00077583	485.291801965915	89.165	0.55119	89.897	89.685	90.236	0.7318					15	10	2	0	0	0	0.2264	1	33971	33971		36.044	0	1	978650	+		49550	21400	36036	36325	48422	48422					0.08396136316616776
SLIWGAPLL	9	Unmodified	_SLIWGAPLL_					0	0	0			REV__ENSG00000176340|ENST00000314133|COX8A	REV__ENSG00000176340|ENST00000314133|COX8A	MULTI-MATCH	A375_MHC_IP_R1	1		2	485.292028	968.569503	-0.40646	-0.00019725	-0.26369	-0.00012797	-0.67015	-0.00032522	485.2919592002265	90.238	0.7079	90.238	89.78	90.488	0	0.17085	0.00038554	NaN	36.044	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1183300	+		49551	21400	36036	36325							0.08396136316616776
SLIWGAPLL	9	Unmodified	_SLIWGAPLL_					0	0	0			REV__ENSG00000176340|ENST00000314133|COX8A	REV__ENSG00000176340|ENST00000314133|COX8A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	485.292028	968.569503	-0.51904	-0.00025189	-1.0796	-0.00052394	-1.5987	-0.00077583	485.291801965915	89.165	0.55119	89.897	89.685	90.236	0.7318	-0.17085	-0.00040641	NaN	36.044	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	978650	+		49552	21400	36036	36325							0.08396136316616776
SLKASLLSV	9	Unmodified	_SLKASLLSV_					0	0	0		ENST00000560451.5_1_15:91463413-91463611:+|nuORF	ENST00000560451.5_1_15:91463413-91463611:+|nuORF	ENST00000560451.5_1_15:91463413-91463611:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	459.66864013671875	2	459.286943	916.559333	-0.25532	-0.00011727	0.78913	0.00036244	0.5338	0.00024517	459.28715207400353	47.832	0.35509	48.593	48.378	48.733	0.76128					10	6	2	0	0	0	0.67483	1	17989	17989		14.838	0	1	1399800			49553	13495	36037	36326	48423	48423					0.09771528591386414
SLKAVWAVQL	10	Unmodified	_SLKAVWAVQL_					0	0	0		chr8:42765204-42768352|268|12.64|0.12|6.78|-|0|CHRNA6,CHRNA6|1	chr8:42765204-42768352|268|12.64|0.12|6.78|-|0|CHRNA6,CHRNA6|1	chr8:42765204-42768352|268|12.64|0.12|6.78|-|0|CHRNA6,CHRNA6|1	MULTI-SECPEP	A375_MHC_IP_R1	1	558.2342529296875	2	557.834591	1113.65463	-0.17634	-9.8369E-05	-0.51373	-0.00028657	-0.69007	-0.00038494	557.834066919533	115.96	0.45779	115.96	115.68	116.14	0					11	8	2	0	0	0	0.88038	1	42563	42563		31.268	5.0002	1	2178900			49554	507	36038	36327	48424	48424					0.1023488178241223
SLKAVWAVQL	10	Unmodified	_SLKAVWAVQL_					0	0	0		chr8:42765204-42768352|268|12.64|0.12|6.78|-|0|CHRNA6,CHRNA6|1	chr8:42765204-42768352|268|12.64|0.12|6.78|-|0|CHRNA6,CHRNA6|1	chr8:42765204-42768352|268|12.64|0.12|6.78|-|0|CHRNA6,CHRNA6|1	MULTI-MATCH	A375_MHC_IP_R2	2		2	557.834591	1113.65463	-0.55229	-0.00030809	0.48081	0.00026821	-0.07148	-3.9874E-05	557.8347899686647	114.96	0.3583	115.65	115.42	115.78	0.68999	-0.15537	0.00050006	NaN	31.268	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2197800			49555	507	36038	36327							0.1023488178241223
SLKCSKHFQF	10	Unmodified	_SLKCSKHFQF_					0	0	0		ENST00000377861.4_3_13:67783303-67783480:-|nuORF	ENST00000377861.4_3_13:67783303-67783480:-|nuORF	ENST00000377861.4_3_13:67783303-67783480:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	408.2996520996094	3	408.877981	1223.61211	-0.037045	-1.5147E-05	-1.2248	-0.0005008	-1.2619	-0.00051595	408.8770330061092	27.826	0.35546	28.505	28.401	28.757	0.67857					9	6	2	0	0	0	0.94102	1	9644	9644		1.4551	0.94916	1	843430			49556	11303	36039	36328	48425	48425					0.009251633825215322
SLKDLKATTW	10	Unmodified	_SLKDLKATTW_					0	0	0		tr|U7T5K4|U7T5K4_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00151PE=4SV=1	tr|U7T5K4|U7T5K4_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00151PE=4SV=1	tr|U7T5K4|U7T5K4_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00151PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	387.9484558105469	3	388.220401	1161.63937	-0.51122	-0.00019847	0.26925	0.00010453	-0.24197	-9.3938E-05	388.2204330485074	59.784	0.65784	60.531	60.299	60.957	0.74714					30	12	4	0	0	0	0.65106	1	22626	22626		17.049	6.7333	1	9496100			49557	30024	36040	36329	48426	48426					0.06501970194540263
SLKDLKATTW	10	Unmodified	_SLKDLKATTW_					0	0	0		tr|U7T5K4|U7T5K4_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00151PE=4SV=1	tr|U7T5K4|U7T5K4_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00151PE=4SV=1	tr|U7T5K4|U7T5K4_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00151PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	582.2258911132812	2	581.826963	1161.63937	-0.72104	-0.00041952	-0.041232	-2.399E-05	-0.76227	-0.00044351	581.8267522244363	59.768	0.55592	60.515	60.299	60.855	0.74714					18	9	3	0	0	0	0.54012	1	22614	22614		32.037	32.037	1	6559800			49558	30024	36040	36329	48427	48427					0.06501970194540263
SLKDLQFLQS	10	Unmodified	_SLKDLQFLQS_					0	0	0		ENSG00000023287|ENST00000025008|RB1CC1;nc|ENSG00000023287|Q8TDY2-2|RB1CC1	ENSG00000023287|ENST00000025008|RB1CC1	ENSG00000023287|ENST00000025008|RB1CC1	MULTI-SECPEP	A375_MHC_IP_R1	1	393.2801513671875	3	393.552039	1177.63429	0.035565	1.3997E-05	0.0027422	1.0792E-06	0.038307	1.5076E-05	393.55178405472384	60.694	0.61001	60.694	60.363	60.973	0					24	11	3	0	0	0	0.85074	1	21900	21900		10.315	1.8709	1	4573300			49559	1075	36041	36330	48428	48428					0.05257666331931432
SLKDYGLEY	9	Unmodified	_SLKDYGLEY_					0	0	0		tr|U7T5K4|U7T5K4_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00151PE=4SV=1	tr|U7T5K4|U7T5K4_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00151PE=4SV=1	tr|U7T5K4|U7T5K4_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00151PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	544.7105102539062	2	544.268947	1086.52334	-0.49177	-0.00026766	-0.17004	-9.2547E-05	-0.66181	-0.0003602	544.2689051260417	55.905	0.55908	55.905	55.584	56.143	0					17	10	2	0	0	0	0.46121	1	19988	19988		41.84	0	1	4620800			49560	30024	36042	36331	48429	48429					-0.016459733761621465
SLKEISFWEIN	11	Unmodified	_SLKEISFWEIN_					0	0	0			REV__DCP2|p.P206S|1|0.31|ENSG00000172795|chr5:113001387-113001387|C/T|missense_variant	REV__DCP2|p.P206S|1|0.31|ENSG00000172795|chr5:113001387-113001387|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	683.0450439453125	2	683.356085	1364.69762	-0.57003	-0.00038954	0.45701	0.0003123	-0.11302	-7.7233E-05	683.356191387713	87.722	0.80923	88.454	88.066	88.875	0.7318					39	15	4	0	0	0	0.99018	1	33512	33512		4.5289	1.2476	1	7850500	+		49561	15971	36043	36332	48430	48430					0.029856070492087383
SLKEKATIF	9	Unmodified	_SLKEKATIF_					0	0	0			REV__tr|U7T5R0|U7T5R0_FUSNUthreonineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00142PE=4SV=1	REV__tr|U7T5R0|U7T5R0_FUSNUthreonineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00142PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.2052001953125	2	518.8055	1035.59645	-0.6174	-0.00032031	-0.10875	-5.6422E-05	-0.72615	-0.00037673	518.805375126629	92.491	0.45563	93.23	92.987	93.443	0.73902					17	8	3	0	0	0	0.16676	1	35188	35188		49.933	0.37871	1	3813200	+		49562	28833	36044	36333	48431	48431					0.08007200137126347
SLKEKFQEIL	10	Unmodified	_SLKEKFQEIL_					0	0	0		ENST00000368654.7_1_10:129914037-129921160:-|nuORF;ENST00000478293.1_1_10:129914037-129924496:-|nuORF	ENST00000368654.7_1_10:129914037-129921160:-|nuORF	ENST00000368654.7_1_10:129914037-129921160:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	412.958740234375	3	412.239573	1233.69689	-0.21777	-8.9771E-05	1.0669	0.00043983	0.84916	0.00035006	412.5741948345721	33.294	0.50965	34.046	33.686	34.196	0.75225					16	9	2	0	0	0	0.92445	1	11797	11797		10.315	1.339	1	1365700			49563	11120	36045	36334	48432	48432					0.08938812400128882
SLKEKFQEIL	10	Unmodified	_SLKEKFQEIL_					0	0	0		ENST00000368654.7_1_10:129914037-129921160:-|nuORF;ENST00000478293.1_1_10:129914037-129924496:-|nuORF	ENST00000368654.7_1_10:129914037-129921160:-|nuORF	ENST00000368654.7_1_10:129914037-129921160:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	412.239573	1233.69689	0.098379	4.0556E-05	0.83897	0.00034586	0.93735	0.00038641	412.2398960645601	34.419	0.35322	34.419	34.154	34.507	0	0.18656	-0.00011415	NaN	10.315	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1545600			49564	11120	36045	36334							0.08938812400128882
SLKELQSNL	9	Unmodified	_SLKELQSNL_					0	0	0		nc|ENSG00000167889|Q3V5L5-5|MGAT5B;nc|ENSG00000167889|Q3V5L5-2|MGAT5B;chr17:76932775-76937988|409|26.93|0.82|5.04|+|ENST00000428789|MGAT5B,MGAT5B;chr17:76926730-76937988|384|13.81|0.68|4.34|+|ENST00000565043|MGAT5B,MGAT5B;ENSG00000167889|ENST00000569840|MGAT5B	nc|ENSG00000167889|Q3V5L5-5|MGAT5B	nc|ENSG00000167889|Q3V5L5-5|MGAT5B	MULTI-SECPEP	A375_MHC_IP_R1	1	516.4364013671875	2	516.290214	1030.56587	-0.74823	-0.0003863	-0.23325	-0.00012042	-0.98148	-0.00050673	516.2901848344176	24.22	0.15306	24.22	24.092	24.245	0					4	2	2	0	0	0	0.69507	1	6778	6778		5.7319	0	1	2278700			49565	446	36046	36335	48433	48433					0.051814217520814054
SLKENFNIK	9	Unmodified	_SLKENFNIK_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-SECPEP	A375_MHC_IP_R1	1	365.64892578125	3	364.873113	1091.59751	0.48928	0.00017852	-0.37708	-0.00013759	0.11219	4.0936E-05	364.8728271755639	45.509	0.35231	45.509	45.284	45.636	0					9	5	2	0	0	0	0.74412	1	15841	15841		6.6304	4.724	1	2229300	+		49566	16825	36047	36336	48434	48434					0.05537414506011373
SLKERRLKKRR	11	Unmodified	_SLKERRLKKRR_					0	0	0		ENST00000333010.6_1_5:147040929-147162182:-|nuORF	ENST00000333010.6_1_5:147040929-147162182:-|nuORF	ENST00000333010.6_1_5:147040929-147162182:-|nuORF	MSMS	A375_MHC_IP_R2	2	735.4782104492188	2	735.4786	1468.94265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.761	1	79.506	79.006	80.006	0.74474								0	0	0	0.16354	1	29897	29897		0.30703	0	1				49567	10781	36048	36337	48435	48435					0.22693370093315934
SLKESEKTAL	10	Unmodified	_SLKESEKTAL_					0	0	0		ENSG00000058453|ENST00000375541|CROCC;nc|ENSG00000058453|Q5TZA2-2|CROCC	ENSG00000058453|ENST00000375541|CROCC	ENSG00000058453|ENST00000375541|CROCC	MSMS	A375_MHC_IP_R2	2	553.1514282226562	2	553.308603	1104.60265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.117	1	24.761	24.261	25.261	0.64368								0	0	0	0.15222	1	7872	7872		13.615	0.5724	1				49568	1293	36049	36338	48436	48436					0.054536735779947776
SLKEVSSRTR	10	Unmodified	_SLKEVSSRTR_					0	0	0		ENST00000248211.10_1_12:133721037-133721097:+|nuORF	ENST00000248211.10_1_12:133721037-133721097:+|nuORF	ENST00000248211.10_1_12:133721037-133721097:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	388.6236572265625	3	388.222805	1161.64658	0.013245	5.1419E-06	3.3282	0.0012921	3.3415	0.0012972	388.22371485876386	19.243	0.50369	19.243	19.221	19.725	0					17	11	3	0	0	0	0.90513	1	4663	4663		10.899	2.7434	1	112310000			49569	10194	36050	36339	48437	48437					0.07222702794979341
SLKEVSSRTR	10	Unmodified	_SLKEVSSRTR_					0	0	0		ENST00000248211.10_1_12:133721037-133721097:+|nuORF	ENST00000248211.10_1_12:133721037-133721097:+|nuORF	ENST00000248211.10_1_12:133721037-133721097:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	388.222805	1161.64658	-0.41366	-0.00016059	4.2987	0.0016688	3.885	0.0015083	388.22416319364777	18.852	0.060436	19.455	19.423	19.483	0.60308	0.10633	0.00068437	NaN	10.899	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37573000			49570	10194	36050	36339							0.07222702794979341
SLKGDNNTDM	10	Unmodified	_SLKGDNNTDM_					0	0	0			REV__ENSG00000121905|ENST00000373467|HPCA	REV__ENSG00000121905|ENST00000373467|HPCA	MULTI-MSMS	A375_MHC_IP_R2	2	547.7000122070312	2	547.74277	1093.47099	-1.2001	-0.00065735	-1.6934	-0.00092754	-2.8935	-0.0015849	547.7414965634995	24.921	0.40746	25.564	25.414	25.822	0.64368					10	7	2	0	0	0	0.70793	1	8223	8223		8.7454	1.4562	1	1631500	+		49571	17911	36051	36340	48438	48438					-0.07200879781430558
SLKGQPGDIY	10	Unmodified	_SLKGQPGDIY_					0	0	0		nc|ENSG00000177628|P04062-4|GBA1;nc|ENSG00000177628|P04062-5|GBA1;nc|ENSG00000177628|P04062-2|GBA1;ENSG00000177628|ENST00000368373|GBA1;nc|ENSG00000177628|P04062-3|GBA1;ENST00000460156.1_1_1:155207923-155208412:-|nuORF	nc|ENSG00000177628|P04062-4|GBA1	nc|ENSG00000177628|P04062-4|GBA1	MULTI-SECPEP	A375_MHC_IP_R2	2	539.7035522460938	2	539.282389	1076.55022	-0.79401	-0.0004282	0.14108	7.6083E-05	-0.65293	-0.00035211	539.783844882498	101.78	0.50919	102.55	102.26	102.77	0.76428					17	9	2	0	0	0	0.92957	1	38646	38646		3.2813	0	1	654630			49572	8096	36052	36341	48439	48439					0.01501135235048423
SLKHLQIVP	9	Unmodified	_SLKHLQIVP_					0	0	0		ENST00000286800.7_1_21:30715464-30715563:+|nuORF	ENST00000286800.7_1_21:30715464-30715563:+|nuORF	ENST00000286800.7_1_21:30715464-30715563:+|nuORF	MSMS	A375_MHC_IP_R1	1	517.88232421875	2	517.821484	1033.62842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.652	1	96.652	96.152	97.152	0								0	0	0	0.15486	1	35518	35518		12.532	3.1841	1				49573	10452	36053	36342	48440	48440					0.11294612610936383
SLKKKKKKT	9	Unmodified	_SLKKKKKKT_					0	0	0		ENST00000287701.14_1_8:28909287-28909479:+|nuORF	ENST00000287701.14_1_8:28909287-28909479:+|nuORF	ENST00000287701.14_1_8:28909287-28909479:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	363.9581298828125	3	363.588648	1087.74411	0.2091	7.6025E-05	0.25924	9.4258E-05	0.46834	0.00017028	363.587874938269	25.079	0.3536	25.079	24.953	25.306	0					9	6	2	0	0	0	0.81166	1	7340	7340		1.0715	1.0715	1	3522600			49574	10457	36054	36343	48441	48441					0.2037513646178013
SLKKKKKKT	9	Unmodified	_SLKKKKKKT_					0	0	0		ENST00000287701.14_1_8:28909287-28909479:+|nuORF	ENST00000287701.14_1_8:28909287-28909479:+|nuORF	ENST00000287701.14_1_8:28909287-28909479:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	363.588648	1087.74411	-0.38417	-0.00013968	0.58685	0.00021337	0.20268	7.3692E-05	363.58787264475717	24.441	0.15237	25.085	24.958	25.11	0.64368	0.0029726	0.00025883	NaN	1.0715	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3594600			49575	10457	36054	36343							0.2037513646178013
SLKKKRKRKL	10	Unmodified	_SLKKKRKRKL_					0	0	0			REV__ENST00000394420.8_1_16:57272934-57272985:+|nuORF	REV__ENST00000394420.8_1_16:57272934-57272985:+|nuORF	MSMS	A375_MHC_IP_R1	1	642.921630859375	2	642.951156	1283.88776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.613	1	97.613	97.113	98.113	0								0	0	0	0.15629	1	35862	35862		0.40072	0.050084	1		+		49576	24306	36055	36344	48442	48442					0.2571698329272749
SLKKKRKRKL	10	Unmodified	_SLKKKRKRKL_					0	0	0			REV__ENST00000394420.8_1_16:57272934-57272985:+|nuORF	REV__ENST00000394420.8_1_16:57272934-57272985:+|nuORF	MSMS	A375_MHC_IP_R2	2	643.4105834960938	2	642.951156	1283.88776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.06	1	116.73	116.23	117.23	0.67359								0	0	0	0.15591	1	43769	43769		1.6526	1.6526	1		+		49577	24306	36055	36344	48443	48443					0.2571698329272749
SLKKKVNL	8	Unmodified	_SLKKKVNL_					0	0	0		DNAH5|p.E219K|1|0.45|ENSG00000039139|chr5:13922112-13922112|C/T|missense_variant	DNAH5|p.E219K|1|0.45|ENSG00000039139|chr5:13922112-13922112|C/T|missense_variant	DNAH5|p.E219K|1|0.45|ENSG00000039139|chr5:13922112-13922112|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	465.7106018066406	2	465.310752	928.606951	-0.7727	-0.00035955	0.72768	0.0003386	-0.045017	-2.0947E-05	465.3109059397176	55.809	0.40858	56.559	56.388	56.796	0.75015					15	7	3	0	0	0	0.972	1	21105	21105		2.3027	2.3027	1	2298000			49578	763	36056	36345	48444	48444					0.1397922758221739
SLKKLFSVVLI	11	Unmodified	_SLKKLFSVVLI_					0	0	0			REV__nc|ENSG00000075945|Q92845-4|KIFAP3	REV__nc|ENSG00000075945|Q92845-4|KIFAP3	MSMS	A375_MHC_IP_R1	1	416.2984924316406	3	416.275958	1245.80605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.851	1	73.851	73.351	74.351	0								0	0	0	0.16313	1	26897	26897		2.4348	0	1		+		49579	16666	36057	36346	48445	48445					0.19297443090272282
SLKKNNNWVME	11	Unmodified	_SLKKNNNWVME_					0	0	0			REV__nc|ENSG00000213085|Q9UL16-2|CFAP45	REV__nc|ENSG00000213085|Q9UL16-2|CFAP45	MULTI-MSMS	A375_MHC_IP_R2	2	681.628662109375	2	681.845361	1361.67617	-0.71173	-0.00048529	-1.8571	-0.0012662	-2.5688	-0.0017515	682.3431763983434	106.81	0.15285	107.57	107.44	107.6	0.75977					4	2	2	0	0	0	0.73135	1	40360	40360		7.609	2.3121	1	1248500	+		49580	22612	36058	36347	48446	48446					0.009798987488011335
SLKLDDLSTCN	11	Unmodified	_SLKLDDLSTCN_					0	0	0		nc|ENSG00000184792|Q969R2-6|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2;nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2;ENST00000496367.1_1_22:31266465-31268361:+|nuORF	nc|ENSG00000184792|Q969R2-6|OSBP2	nc|ENSG00000184792|Q969R2-6|OSBP2	MULTI-SECPEP	A375_MHC_IP_R2	2	402.92095947265625	3	403.532427	1207.57545	0.02953	1.1917E-05	-0.47458	-0.00019151	-0.44505	-0.00017959	403.5318212368748	41.95	0.76697	42.725	42.249	43.016	0.77451					22	14	2	0	0	0	0.99738	1	15463	15463		0.36667	0	1	1935500			49581	8609	36059	36348	48447	48447					-0.02003178024688168
SLKLLQLI	8	Unmodified	_SLKLLQLI_					0	0	0			REV__ENST00000485781.5_1_2:63816129-63824744:+|nuORF	REV__ENST00000485781.5_1_2:63816129-63824744:+|nuORF	MSMS	A375_MHC_IP_R2	2	464.6539001464844	2	464.315503	926.616454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.39	1	113.11	112.61	113.61	0.72458								0	0	0	0.16876	1	42369	42369		37.974	0	1		+		49582	25313	36060	36349	48448	48448					0.15020995867757847
SLKLLQLILRL	11	Unmodified	_SLKLLQLILRL_					0	0	0			REV__ENST00000485781.5_1_2:63816129-63824744:+|nuORF	REV__ENST00000485781.5_1_2:63816129-63824744:+|nuORF	MSMS	A375_MHC_IP_R1	1	655.5305786132812	2	655.450123	1308.88569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.841	1	87.841	87.341	88.341	0								0	0	0	0.16334	1	32239	32239		1.3295	0	1		+		49583	25313	36061	36350	48449	48449					0.24360509764278504
SLKLLSSQQE	10	Unmodified	_SLKLLSSQQE_					0	0	0			REV__ENSG00000248920|ENST00000515566|USP17L19	REV__ENSG00000248920|ENST00000515566|USP17L19	MSMS	A375_MHC_IP_R1	1	378.1462707519531	3	378.211794	1131.61355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108	1	108	107.5	108.5	0								0	0	0	0.15397	1	39624	39624		7.9454	0	1		+		49584	22731	36062	36351	48450	48450					0.053010759522976514
SLKLNRPVH	9	Unmodified	_SLKLNRPVH_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MSMS	A375_MHC_IP_R1	1	532.32421875	2	532.322183	1062.62981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.81	1	121.81	121.31	122.31	0								0	0	0	0.15486	1	45263	45263		7.9102	2.6133	1		+		49585	16825	36063	36352	48451	48451					0.101002466996988
SLKLYFLGPFI	11	Unmodified	_SLKLYFLGPFI_					0	0	0			REV__ENSG00000139974|ENST00000267488|SLC38A6	REV__ENSG00000139974|ENST00000267488|SLC38A6	MSMS	A375_MHC_IP_R2	2	433.2853088378906	3	433.256675	1296.7482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.83	1	141.86	141.36	142.36	0.030731								0	0	0	0.16334	1	55461	55461		1.3296	0	1		+		49586	19187	36064	36353	48452	48452					0.11169181164859765
SLKMRISCLL	10	Unmodified	_SLKMRISCLL_					0	0	0		ENST00000319977.8_1_17:42219400-42225280:+|nuORF	ENST00000319977.8_1_17:42219400-42225280:+|nuORF	ENST00000319977.8_1_17:42219400-42225280:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	582.7348022460938	2	582.335587	1162.65662	-0.40032	-0.00023312	-0.77219	-0.00044967	-1.1725	-0.0006828	582.3350423747684	130.23	1.163	130.45	129.64	130.81	0.2142					46	22	4	0	0	0	0.71944	1	51105	51105		3.5965	3.5965	1	18769000			49587	10685	36065	36354	48453	48453					0.08179851204363331
SLKNAYDLF	9	Unmodified	_SLKNAYDLF_					0	0	0			REV__ENSG00000178033|ENST00000368599|CALHM5	REV__ENSG00000178033|ENST00000368599|CALHM5	MULTI-SECPEP	A375_MHC_IP_R1	1	535.6671142578125	2	535.779482	1069.54441	-0.47423	-0.00025408	0.40444	0.00021669	-0.069784	-3.7389E-05	535.7796930394284	70.197	0.40807	70.197	69.933	70.341	0					13	7	2	0	0	0	0.4261	1	25395	25395		30.637	3.7529	1	2176300	+		49588	21481	36066	36355	48454	48454					0.012420367233517027
SLKNKFIQI	9	Unmodified	_SLKNKFIQI_					0	0	0		nc|ENSG00000117477|Q5TID7-2|CCDC181	nc|ENSG00000117477|Q5TID7-2|CCDC181	nc|ENSG00000117477|Q5TID7-2|CCDC181	MULTI-SECPEP	A375_MHC_IP_R1	1	363.9342956542969	3	364.225486	1089.65463	0.23908	8.7078E-05	0.65029	0.00023685	0.88936	0.00032393	364.2256253515265	46.22	0.4033	46.22	45.992	46.395	0					11	7	2	0	0	0	0.76827	1	16140	16140		4.1895	1.691	1	1485700			49589	14560	36067	36356	48455	48455					0.11338881782421595
SLKNKFIQI	9	Unmodified	_SLKNKFIQI_					0	0	0		nc|ENSG00000117477|Q5TID7-2|CCDC181	nc|ENSG00000117477|Q5TID7-2|CCDC181	nc|ENSG00000117477|Q5TID7-2|CCDC181	MULTI-MSMS	A375_MHC_IP_R2	2	364.57171630859375	3	364.225486	1089.65463	-0.13501	-4.9174E-05	1.1762	0.00042841	1.0412	0.00037924	364.5603311437967	45.007	0.35709	45.776	45.594	45.951	0.7691					10	6	2	0	0	0	0.59266	2	16805	16793;16805		15.248	3.0078	1	973060			49590	14560	36067	36356	48456;48457	48457					0.11338881782421595
SLKNMLLVMDT	11	Unmodified	_SLKNMLLVMDT_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MSMS	A375_MHC_IP_R2	2	421.9421081542969	3	422.22617	1263.65668	-0.43206	-0.00018242	0.55687	0.00023513	0.12482	5.2701E-05	422.2263730966603	24.391	0.25358	25.035	24.857	25.11	0.64368					7	4	2	0	0	0	0.72513	1	8000	8000		13.535	1.3602	1	8209900			49591	14531	36068	36357	48458	48458					0.035398064136870744
SLKPFRKW	8	Unmodified	_SLKPFRKW_					0	0	0		ENSG00000171649|ENST00000597850|ZIK1;nc|ENSG00000171649|Q3SY52-3|ZIK1;nc|ENSG00000171649|Q3SY52-2|ZIK1;ENST00000307468.4_1_19:58095687-58102640:+|nuORF	ENSG00000171649|ENST00000597850|ZIK1	ENSG00000171649|ENST00000597850|ZIK1	MSMS	A375_MHC_IP_R2	2	354.4700927734375	3	354.546671	1060.61818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.677	1	34.429	33.929	34.929	0.75225								0	0	0	0.16876	1	12083	12083		10.824	5.0405	1				49592	7624	36069	36358	48459	48459					0.09030049676357521
SLKQQLVDLHH	11	Unmodified	_SLKQQLVDLHH_					0	0	0		nc|ENSG00000103995|O94986-1|CEP152;nc|ENSG00000103995|O94986-2|CEP152;ENSG00000103995|ENST00000380950|CEP152;nc|ENSG00000103995|O94986-3|CEP152	nc|ENSG00000103995|O94986-1|CEP152	nc|ENSG00000103995|O94986-1|CEP152	MULTI-MSMS	A375_MHC_IP_R2	2	440.3135070800781	3	439.913971	1316.72008	-0.66796	-0.00029385	0.065263	2.871E-05	-0.6027	-0.00026514	439.91392285408705	26.663	0.25404	27.323	27.212	27.466	0.65992					8	4	2	0	0	0	0.68072	1	9077	9077		17.049	7.2843	1	2288700			49593	2478	36070	36359	48460	48460					0.07439251237451572
SLKQQLVDLHH	11	Unmodified	_SLKQQLVDLHH_					0	0	0		nc|ENSG00000103995|O94986-1|CEP152;nc|ENSG00000103995|O94986-2|CEP152;ENSG00000103995|ENST00000380950|CEP152;nc|ENSG00000103995|O94986-3|CEP152	nc|ENSG00000103995|O94986-1|CEP152	nc|ENSG00000103995|O94986-1|CEP152	MULTI-MATCH	A375_MHC_IP_R1	1		3	439.913971	1316.72008	-0.18132	-7.9767E-05	-0.1953	-8.5916E-05	-0.37663	-0.00016568	439.9138023380951	27.372	0.30375	27.372	27.179	27.482	0	0.024579	-0.00016574	NaN	17.049	13	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1760300			49594	2478	36070	36359							0.07439251237451572
SLKQYFLRG	9	Unmodified	_SLKQYFLRG_					0	0	0		SLC25A38|p.H119Y|2|0.06|ENSG00000144659|chr3:39391519-39391519|C/T|missense_variant;ENSG00000144659|ENST00000650617|SLC25A38	SLC25A38|p.H119Y|2|0.06|ENSG00000144659|chr3:39391519-39391519|C/T|missense_variant	SLC25A38|p.H119Y|2|0.06|ENSG00000144659|chr3:39391519-39391519|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	371.61114501953125	3	371.213469	1110.61858	0.2785	0.00010338	-0.57426	-0.00021317	-0.29576	-0.00010979	371.2132530920158	32.016	0.46255	32.016	31.819	32.282	0					13	8	2	0	0	0	0.80516	1	10228	10228		0.18151	0	1	1874400			49595	5503	36071	36360	48461	48461					0.06769424605545282
SLKRELFKIKT	11	Unmodified	_SLKRELFKIKT_					0	0	0			REV__tr|U7SQX5|U7SQX5_FUSNUConjugaltransferproteinTraDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01837PE=4SV=1	REV__tr|U7SQX5|U7SQX5_FUSNUConjugaltransferproteinTraDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01837PE=4SV=1	MSMS	A375_MHC_IP_R1	1	681.95849609375	2	681.927012	1361.83947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.358	1	77.358	76.858	77.858	0								0	0	0	0.16334	1	28220	28220		1.3295	0	1		+		49596	28389	36072	36361	48462	48462					0.17302444862161792
SLKRGRRYI	9	Unmodified	_SLKRGRRYI_					0	0	0			REV__ENST00000546455.5_1_12:47610250-47610424:+|nuORF	REV__ENST00000546455.5_1_12:47610250-47610424:+|nuORF	MSMS	A375_MHC_IP_R2	2	574.6699829101562	2	574.854181	1147.69381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.223	1	78.966	78.466	79.466	0.74293								0	0	0	0.15486	1	29704	29704		8.5933	1.304	1		+		49597	25999	36073	36362	48463	48463					0.12587026856658667
SLKRHLNQF	9	Unmodified	_SLKRHLNQF_					0	0	0			REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	MULTI-MSMS	A375_MHC_IP_R2	2	382.5925598144531	3	381.552485	1141.63563	-0.31842	-0.00012149	0.09217	3.5168E-05	-0.22625	-8.6327E-05	381.5525234667063	28.217	0.76176	28.895	28.452	29.214	0.67857					43	14	5	0	0	0	0.69317	1	9785	9785		7.609	2.7119	1	32801000	+		49598	17596	36074	36363	48464	48464					0.07047345211367428
SLKRHSPLFT	10	Unmodified	_SLKRHSPLFT_					0	0	0			REV__ENST00000553264.5_1_14:104177886-104178036:-|nuORF	REV__ENST00000553264.5_1_14:104177886-104178036:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	396.28033447265625	3	395.89614	1184.66659	0.0082571	3.269E-06	-0.32259	-0.00012771	-0.31433	-0.00012444	395.89603294102704	40.777	0.30375	40.777	40.559	40.863	0					7	5	2	0	0	0	0.94269	1	14053	14053		5.7834	0	1	759030	+		49599	26063	36075	36364	48465	48465					0.08164498525593444
SLKRKTRIKKL	11	Unmodified	_SLKRKTRIKKL_					0	0	0			REV__tr|U7T6N0|U7T6N0_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00304PE=4SV=1	REV__tr|U7T6N0|U7T6N0_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00304PE=4SV=1	MSMS	A375_MHC_IP_R1	1	686.0148315429688	2	685.969545	1369.92454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.97	1	114.97	114.47	115.47	0								0	0	0	0.16334	1	42161	42161		1.3295	0	1		+		49600	28867	36076	36365	48466	48466					0.2543723511862481
SLKRKVPRN	9	Unmodified	_SLKRKVPRN_					0	0	0		ENST00000498418.5_1_22:45593059-45595943:-|nuORF;ENST00000474515.5_1_22:45593059-45598540:-|nuORF;nc|ENSG00000100364|Q6ICG6-3|KIAA0930;ENSG00000100364|ENST00000336156|KIAA0930;nc|ENSG00000100364|Q6ICG6-2|KIAA0930	ENST00000498418.5_1_22:45593059-45595943:-|nuORF	ENST00000498418.5_1_22:45593059-45595943:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	366.9268493652344	3	366.568247	1096.68291	-0.20503	-7.5159E-05	2.8473	0.0010437	2.6423	0.00096857	366.90436622973135	24.42	0.81121	25.063	24.653	25.465	0.64368					31	15	3	0	0	0	0.70902	1	7977	7977		6.1918	1.2948	1	10726000			49601	2168	36077	36366	48467	48467					0.13843624482365158
SLKRLVTRRKR	11	Unmodified	_SLKRLVTRRKR_					0	0	0		ENSG00000179841|ENST00000394718|AKAP5	ENSG00000179841|ENST00000394718|AKAP5	ENSG00000179841|ENST00000394718|AKAP5	MSMS	A375_MHC_IP_R1	1	706.9696655273438	2	706.967868	1411.92118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.17	1	53.17	52.67	53.67	0								0	0	0	0.16334	1	18945	18945		1.3295	0.9789	1				49602	8252	36078	36367	48468	48468					0.23169985064623688
SLKRMMKKL	9	Unmodified	_SLKRMMKKL_					0	0	0		AIF1L|p.E77K|1|0.16|ENSG00000126878|chr9:131117782-131117782|G/A|missense_variant	AIF1L|p.E77K|1|0.16|ENSG00000126878|chr9:131117782-131117782|G/A|missense_variant	AIF1L|p.E77K|1|0.16|ENSG00000126878|chr9:131117782-131117782|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	378.96051025390625	3	378.89984	1133.67769	0.17441	6.6082E-05	0.94545	0.00035823	1.1199	0.00042431	378.90016051873454	24.372	0.25279	24.372	24.245	24.498	0					8	4	2	0	0	0	0.50892	1	6888	6888		19.362	19.362	1	1760800			49603	89	36079	36368	48469	48469					0.11619861303893231
SLKRPNMTYCW	11	Unmodified	_SLKRPNMTYCW_					0	0	0			REV__LPA|p.F1791S|1|0.18|ENSG00000198670|chr6:160545466-160545466|A/G|missense_variant	REV__LPA|p.F1791S|1|0.18|ENSG00000198670|chr6:160545466-160545466|A/G|missense_variant	MSMS	A375_MHC_IP_R1	1	699.7337646484375	2	699.836482	1397.65841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.89	1	116.89	116.39	117.39	0								0	0	0	0.16203	1	42887	42887		8.1555	2.4237	1		+		49604	26937	36080	36369	48470	48470					-0.024511397776677768
SLKRWTWR	8	Unmodified	_SLKRWTWR_					0	0	0		ENST00000437348.5_1_11:31115730-31149186:-|nuORF	ENST00000437348.5_1_11:31115730-31149186:-|nuORF	ENST00000437348.5_1_11:31115730-31149186:-|nuORF	MSMS	A375_MHC_IP_R2	2	378.26458740234375	3	378.217325	1131.63015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.958	1	52.711	52.211	53.211	0.75225								0	0	0	0.16876	1	19567	19567		13.042	1.5246	1				49605	11938	36081	36370	48471	48471					0.06959666419538735
SLKTCLFVI	9	Unmodified	_SLKTCLFVI_					0	0	0		ENST00000395787.3_1_11:34910388-34916560:-|nuORF;ENST00000527830.1_1_11:34910388-34937787:-|nuORF	ENST00000395787.3_1_11:34910388-34916560:-|nuORF	ENST00000395787.3_1_11:34910388-34916560:-|nuORF	MSMS	A375_MHC_IP_R2	2	512.6618041992188	2	512.298996	1022.58344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.26	1	132.45	131.95	132.95	0.18953								0	0	0	0.15486	1	52026	52026		10.824	1.4765	1				49606	11475	36082	36371	48472	48472					0.07305045753400918
SLKTDLMKA	9	Unmodified	_SLKTDLMKA_					0	0	0		PRSS55|p.V205L|1|0.38|ENSG00000184647|chr8:10532920-10532920|G/T|missense_variant	PRSS55|p.V205L|1|0.38|ENSG00000184647|chr8:10532920-10532920|G/T|missense_variant	PRSS55|p.V205L|1|0.38|ENSG00000184647|chr8:10532920-10532920|G/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	503.99102783203125	2	503.78371	1005.55287	-1.077	-0.00054258	-0.17955	-9.0452E-05	-1.2566	-0.00063304	503.7836782063781	26.272	0.55821	26.932	26.551	27.109	0.65992					18	10	2	0	0	0	0.67483	1	8928	8928		14.838	4.0143	1	2664400			49607	15238	36083	36372	48473	48473					0.0503126736834929
SLKTIPVKY	9	Unmodified	_SLKTIPVKY_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant;HMCN1|p.P2051Lfs*3|1|0.45|ENSG00000143341|chr1:186039851-186039861|CTGTTTCTAGT/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6906127929688	2	524.823692	1047.63283	-0.47267	-0.00024807	1.3402	0.00070339	0.86757	0.00045532	525.3265474535268	57.598	0.40677	57.598	57.364	57.771	0					11	7	2	0	0	0	0.69507	1	20616	20616		19.257	7.6167	1	2236200			49608	5371	36084	36373	48474	48474					0.11092077033845271
SLKTKRDVL	9	Unmodified	_SLKTKRDVL_					0	0	0			REV__tr|U7SGN0|U7SGN0_FUSNUDUF368domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02254PE=4SV=1	REV__tr|U7SGN0|U7SGN0_FUSNUDUF368domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02254PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	354.2886657714844	3	353.888874	1058.64479	-0.6617	-0.00023417	3.2093	0.0011357	2.5476	0.00090156	353.8900294342183	25.255	0.66191	25.898	25.668	26.33	0.64368					19	12	2	0	0	0	0.67787	1	8448	8448		8.9762	0	1	3843100	+		49609	28191	36085	36374	48475	48475					0.11781693777038527
SLKTLSNL	8	Unmodified	_SLKTLSNL_					0	0	0			REV__nc|ENSG00000171509|Q9HBX9-3|RXFP1	REV__nc|ENSG00000171509|Q9HBX9-3|RXFP1	MULTI-SECPEP	A375_MHC_IP_R2	2	438.6632080078125	2	438.263468	874.512382	-0.59076	-0.00025891	0.24056	0.00010543	-0.3502	-0.00015348	438.26351226077855	57.804	0.4574	58.553	58.272	58.729	0.74894					13	8	2	0	0	0	0.81376	1	21851	21851		25.399	0	1	1934300	+		49610	27357	36086	36375	48476	48476					0.07010669040232642
SLKTPFKVV	9	Unmodified	_SLKTPFKVV_					0	0	0		tr|U7SKL4|U7SKL4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02069PE=4SV=1	tr|U7SKL4|U7SKL4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02069PE=4SV=1	tr|U7SKL4|U7SKL4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02069PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	510.45159912109375	2	509.81841	1017.62227	-0.3157	-0.00016095	-0.7038	-0.00035881	-1.0195	-0.00051976	509.8183811358438	47.674	0.45327	47.674	47.467	47.92	0					12	8	2	0	0	0	0.63327	1	16864	16864		24.021	5.8742	1	1888200			49611	29477	36087	36376	48477	48477					0.11416094379421793
SLKTYKIKKVK	11	Unmodified	_SLKTYKIKKVK_					0	0	0		tr|U7T0X3|U7T0X3_FUSNUDUF1275domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00713PE=4SV=1	tr|U7T0X3|U7T0X3_FUSNUDUF1275domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00713PE=4SV=1	tr|U7T0X3|U7T0X3_FUSNUDUF1275domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00713PE=4SV=1	MSMS	A375_MHC_IP_R1	1	668.3817749023438	2	668.439755	1334.86496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.34	1	124.34	123.84	124.84	0								0	0	0	0.16108	1	46775	46775		13.042	10.047	1				49612	29893	36088	36377	48478	48478					0.21091919384593893
SLKTYKIKKVK	11	Unmodified	_SLKTYKIKKVK_					0	0	0		tr|U7T0X3|U7T0X3_FUSNUDUF1275domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00713PE=4SV=1	tr|U7T0X3|U7T0X3_FUSNUDUF1275domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00713PE=4SV=1	tr|U7T0X3|U7T0X3_FUSNUDUF1275domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00713PE=4SV=1	MSMS	A375_MHC_IP_R1	1	668.5149536132812	2	668.439755	1334.86496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.42	1	124.42	123.92	124.92	0								0	0	0	0.16258	1	46834	46834		5.2969	2.0156	1				49613	29893	36088	36377	48479	48479					0.21091919384593893
SLKVLRQCL	9	Unmodified	_SLKVLRQCL_					0	0	0			REV__ENSG00000115649|ENST00000360507|CNPPD1	REV__ENSG00000115649|ENST00000360507|CNPPD1	MULTI-SECPEP	A375_MHC_IP_R2	2	353.2646789550781	3	353.882955	1058.62703	-0.23817	-8.4283E-05	0.32065	0.00011347	0.082487	2.9191E-05	353.88302374340094	31.855	0.30315	32.592	32.401	32.704	0.73691					8	5	2	0	0	0	0.73926	1	11330	11330		17.443	9.8337	1	1631900	+		49614	17903	36089	36378	48480	48480					0.10006655250549557
SLKVRLDP	8	Unmodified	_SLKVRLDP_					0	0	0		nc|ENSG00000164347|Q969S9-2|GFM2;nc|ENSG00000164347|Q969S9-3|GFM2;ENSG00000164347|ENST00000296805|GFM2;ENST00000515125.5_1_5:74021945-74032693:-|nuORF;ENST00000514734.5_1_5:74026495-74034184:-|nuORF;nc|ENSG00000164347|Q969S9-4|GFM2	nc|ENSG00000164347|Q969S9-2|GFM2	nc|ENSG00000164347|Q969S9-2|GFM2	MULTI-MSMS	A375_MHC_IP_R2	2	464.6474914550781	2	464.284734	926.554916	-0.50736	-0.00023556	-0.18594	-8.6331E-05	-0.69331	-0.00032189	464.28465102498035	69.322	2.0309	70.056	69.574	71.605	0.73421					108	39	5	0	0	0	0.77603	1	26837	26837		9.3474	0.75416	1	306810000			49615	6832	36090	36379	48481	48481					0.08870064168456793
SLKVWVPS	8	Unmodified	_SLKVWVPS_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-SECPEP	A375_MHC_IP_R2	2	916.2089233398438	1	915.52983	914.522553	-0.2407	-0.00022037	1.2587	0.0011524	1.018	0.00093201	915.5321663382454	117.96	0.30166	118.57	118.44	118.74	0.60909					10	5	3	0	0	0	0.97144	1	44770	44770		2.3027	0	1	15790000	+		49616	19422	36091	36380	48482	48482					0.06187276765467686
SLKVYSSPD	9	Unmodified	_SLKVYSSPD_					0	0	0			REV__ENSG00000158220|ENST00000389567|ESYT3	REV__ENSG00000158220|ENST00000389567|ESYT3	MULTI-SECPEP	A375_MHC_IP_R2	2	995.8997802734375	1	995.504403	994.497126	0.22767	0.00022664	-1.4307	-0.0014243	-1.2031	-0.0011977	995.5023569376111	113.1	1.6746	113.81	113.31	114.98	0.70985					40	32	2	0	0	0	0.78348	1	43002	43002		4.3292	0	1	10101000	+		49617	20066	36092	36381	48483	48483					-0.0003424254762194323
SLKWFSAQSV	10	Unmodified	_SLKWFSAQSV_					0	0	0			REV__ENST00000568683.5_1_16:88764346-88764736:-|nuORF	REV__ENST00000568683.5_1_16:88764346-88764736:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	576.75927734375	2	576.806031	1151.59751	0.0015104	8.7119E-07	-0.20621	-0.00011894	-0.2047	-0.00011807	577.307543912003	100.71	0.35787	101.47	101.24	101.6	0.76278					9	6	2	0	0	0	0.71466	1	38142	38142		5.7319	0	1	624110	+		49618	26263	36093	36382	48484	48484					0.02777414506022069
SLLADRAECQ	10	Unmodified	_SLLADRAECQ_					0	0	0			REV__nc|ENSG00000273777|Q6UY09-4|CEACAM20	REV__nc|ENSG00000273777|Q6UY09-4|CEACAM20	MULTI-MSMS	A375_MHC_IP_R1	1	553.6669921875	2	553.268955	1104.52336	-0.39772	-0.00022005	-1.0272	-0.00056832	-1.4249	-0.00078836	553.2675001944848	51.56	0.55964	51.56	51.219	51.778	0					27	10	4	0	0	0	0.6502	1	18331	18331		17.113	2.2746	1	3223700	+		49619	22954	36094	36383	48485	48485					-0.024722966478066155
SLLADRAECQ	10	Unmodified	_SLLADRAECQ_					0	0	0			REV__nc|ENSG00000273777|Q6UY09-4|CEACAM20	REV__nc|ENSG00000273777|Q6UY09-4|CEACAM20	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	553.268955	1104.52336	-0.39772	-0.00022005	-1.0272	-0.00056832	-1.4249	-0.00078836	553.2675001944848	51.56	0.55964	51.56	51.219	51.778	0	-0.0037991	0.00048196	NaN	17.113	27	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3223700	+		49620	22954	36094	36383							-0.024722966478066155
SLLAHERQL	9	Unmodified	_SLLAHERQL_					0	0	0			REV__ENSG00000255181|ENST00000542437|CCDC166	REV__ENSG00000255181|ENST00000542437|CCDC166	MULTI-SECPEP	A375_MHC_IP_R2	2	534.2033081054688	2	533.803823	1065.59309	-1.0131	-0.00054078	-0.1455	-7.767E-05	-1.1586	-0.00061845	533.803785212724	41.145	0.30467	41.92	41.794	42.098	0.77451					9	5	2	0	0	0	0.74412	1	15292	15292		3.2813	1.9518	1	2831600	+		49621	22874	36095	36384	48486	48486					0.06291950083118536
SLLAHPYL	8	Unmodified	_SLLAHPYL_					0	0	0		nc|ENSG00000172782|Q8N9I5-2|FADS6;nc|ENSG00000172782|Q8N9I5|FADS6;ENSG00000172782|ENST00000612771|FADS6	nc|ENSG00000172782|Q8N9I5-2|FADS6	nc|ENSG00000172782|Q8N9I5-2|FADS6	MULTI-MSMS	A375_MHC_IP_R1	1	457.6604919433594	2	457.260728	912.506903	-0.16755	-7.6615E-05	-0.17488	-7.9968E-05	-0.34244	-0.00015658	457.2606373604578	82.967	0.91163	82.967	82.52	83.432	0					25	17	2	0	0	0	0.48378	1	30327	30327		49.669	0	1	2322200			49622	7736	36096	36385	48487	48487					0.04714990248419326
SLLAHPYL	8	Unmodified	_SLLAHPYL_					0	0	0		nc|ENSG00000172782|Q8N9I5-2|FADS6;nc|ENSG00000172782|Q8N9I5|FADS6;ENSG00000172782|ENST00000612771|FADS6	nc|ENSG00000172782|Q8N9I5-2|FADS6	nc|ENSG00000172782|Q8N9I5-2|FADS6	MULTI-MSMS	A375_MHC_IP_R2	2	457.66070556640625	2	457.260728	912.506903	-0.34021	-0.00015557	0.040502	1.852E-05	-0.29971	-0.00013705	457.26074415496095	81.901	0.71281	82.644	82.431	83.144	0.74294					18	13	2	0	0	0	0.48378	1	31123	31123		49.669	0	1	1920600			49623	7736	36096	36385	48488	48488					0.04714990248419326
SLLAKAVDP	9	Unmodified	_SLLAKAVDP_					0	0	0		nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3	nc|ENSG00000139734|Q9NSV4-2|DIAPH3	nc|ENSG00000139734|Q9NSV4-2|DIAPH3	MULTI-MSMS	A375_MHC_IP_R1	1	457.6711120605469	2	457.271293	912.528032	-0.061359	-2.8058E-05	0.028803	1.3171E-05	-0.032556	-1.4887E-05	457.27120563884876	42.659	0.70737	42.659	42.336	43.043	0					23	13	3	0	0	0	0.34064	1	14807	14807		27.629	0.74515	1	2920700			49624	5107	36097	36386	48489	48489					0.06826955557278325
SLLALVLQKT	10	Unmodified	_SLLALVLQKT_					0	0	0		OPTC|p.E16K|1|0.44|ENSG00000188770|chr1:203496051-203496051|G/A|missense_variant	OPTC|p.E16K|1|0.44|ENSG00000188770|chr1:203496051-203496051|G/A|missense_variant	OPTC|p.E16K|1|0.44|ENSG00000188770|chr1:203496051-203496051|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	362.4678955078125	3	362.569142	1084.6856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.707	1	52.707	52.207	53.207	0								0	0	0	0.1511	1	18759	18759		15.739	0	1				49625	15056	36098	36387	48490	48490					0.14664035096643602
SLLALVLQKT	10	Unmodified	_SLLALVLQKT_					0	0	0		OPTC|p.E16K|1|0.44|ENSG00000188770|chr1:203496051-203496051|G/A|missense_variant	OPTC|p.E16K|1|0.44|ENSG00000188770|chr1:203496051-203496051|G/A|missense_variant	OPTC|p.E16K|1|0.44|ENSG00000188770|chr1:203496051-203496051|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	362.597412109375	3	362.569142	1084.6856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.099	1	52.851	52.351	53.351	0.75225								0	0	0	0.15486	1	19629	19629		5.0475	0	1				49626	15056	36098	36387	48491	48491					0.14664035096643602
SLLAPEVMML	10	Unmodified	_SLLAPEVMML_					0	0	0		ENST00000550536.5_2_12:70133307-70133607:+|nuORF	ENST00000550536.5_2_12:70133307-70133607:+|nuORF	ENST00000550536.5_2_12:70133307-70133607:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	368.9328308105469	3	368.532823	1102.57664	-0.1752	-6.4566E-05	0.48204	0.00017765	0.30684	0.00011308	368.5329011596768	59.102	0.50746	59.849	59.59	60.098	0.74714					16	9	2	0	0	0	0.65751	1	22384	22384		16.566	3.6933	1	2323600			49627	13373	36099	36388	48492	48492					0.02945364810511819
SLLAPLLSGVI	11	Unmodified	_SLLAPLLSGVI_					0	0	0			REV__ENST00000557778.1_1_14:102100909-102101767:-|nuORF	REV__ENST00000557778.1_1_14:102100909-102101767:-|nuORF	MSMS	A375_MHC_IP_R1	1	541.9716796875	2	541.844625	1081.6747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.718	1	85.718	85.218	86.218	0								0	0	0	0.16179	1	31419	31419		9.3831	0.63772	1		+		49628	26130	36100	36389	48493	48493					0.13712632722376839
SLLAQKIEV	9	Unmodified	_SLLAQKIEV_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000461733.5_1_3:183898306-183901401:+|nuORF;ENST00000480260.1_1_3:183899436-183900037:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MULTI-MSMS	A375_MHC_IP_R1	1	501.2051696777344	2	500.8055	999.596446	-0.45148	-0.0002261	0.067686	3.3897E-05	-0.38379	-0.0001922	500.8054282061428	76.506	0.71014	76.506	76.168	76.878	0					39	13	4	0	0	0	0.064406	1	27857	27857		58.679	3.1761	1	10100000			49629	6467	36101	36390	48494	48494					0.09663200137140393
SLLATAILGA	10	Unmodified	_SLLATAILGA_					0	0	0		ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	MULTI-SECPEP	A375_MHC_IP_R1	1	465.6864929199219	2	465.286943	928.559333	0.019063	8.8699E-06	-0.02897	-1.3479E-05	-0.0099066	-4.6094E-06	465.28698512787577	107.98	3.6637	107.98	107.54	111.21	0					173	71	4	0	0	0	0.013295	1	39525	39525		103.75	0	1	761780000			49630	5636	36102	36391	48495	48495					0.09219528591370363
SLLATAILGA	10	Unmodified	_SLLATAILGA_					0	0	0		ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	MULTI-SECPEP	A375_MHC_IP_R2	2	465.6866149902344	2	465.286943	928.559333	-0.71739	-0.00033379	-0.11924	-5.548E-05	-0.83663	-0.00038927	465.2869183441126	106.96	3.7684	107.72	107.04	110.81	0.75977					219	73	6	0	0	0	0.013295	1	40546	40546		115.69	5.1393	1	697200000			49631	5636	36102	36391	48496	48496					0.09219528591370363
SLLATAILGA	10	Unmodified	_SLLATAILGA_					0	0	0		ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	MULTI-SECPEP	A375_MHC_IP_R2	2	929.8956298828125	1	929.566609	928.559333	-0.35277	-0.00032792	-0.32237	-0.00029967	-0.67514	-0.00062759	929.5662829856955	106.96	0.71073	107.72	107.44	108.15	0.75977					31	13	3	0	0	0	0.1433	1	40381	40381		56.177	0	1	21887000			49632	5636	36102	36391	48497	48497					0.09219528591370363
SLLATGGADRL	11	Unmodified	_SLLATGGADRL_					0	0	0		ENST00000536995.5_1_11:72535848-72537775:+|nuORF;nc|ENSG00000168010|Q8NAA4-2|ATG16L2;ENSG00000168010|ENST00000321297|ATG16L2	ENST00000536995.5_1_11:72535848-72537775:+|nuORF	ENST00000536995.5_1_11:72535848-72537775:+|nuORF	MSMS	A375_MHC_IP_R2	2	358.5900573730469	3	358.536501	1072.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.493	1	24.123	23.623	24.623	0.63014								0	0	0	0.16182	1	7569	7569		9.2438	1.6348	1				49633	7252	36103	36392	48498	48498					0.05428226500657729
SLLAYPTAVNW	11	Unmodified	_SLLAYPTAVNW_					0	0	0		VNN2|p.S311L|1|0.62|ENSG00000112303|chr6:132751413-132751413|G/A|missense_variant	VNN2|p.S311L|1|0.62|ENSG00000112303|chr6:132751413-132751413|G/A|missense_variant	VNN2|p.S311L|1|0.62|ENSG00000112303|chr6:132751413-132751413|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	412.28729248046875	3	412.220401	1233.63937	0.052371	2.1588E-05	-2.0129	-0.00082977	-1.9606	-0.00080818	412.21975893118827	19.437	0.69068	19.437	19.238	19.928	0					27	13	3	0	0	0	0.97636	1	4997	4997		11.631	2.3876	1	3330300			49634	30142	36104	36393	48499	48499					0.03189970194557645
SLLCRDELFA	10	Unmodified	_SLLCRDELFA_					0	0	0			REV__ENST00000372921.9_1_10:75148159-75156954:-|nuORF	REV__ENST00000372921.9_1_10:75148159-75156954:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	584.197265625	2	583.797349	1165.58014	-0.058073	-3.3903E-05	0.093512	5.4592E-05	0.035438	2.0689E-05	583.7974372244007	92.311	0.50679	92.311	92.059	92.566	0					24	9	3	0	0	0	0.6774	1	33901	33901		34.402	0	1	7405900	+		49635	24077	36105	36394	48500	48500					0.003977509087235376
SLLCYQKKI	9	Unmodified	_SLLCYQKKI_					0	0	0			REV__SEC63|p.R125C|1|0.83|ENSG00000025796|chr6:107921876-107921876|G/A|missense_variant	REV__SEC63|p.R125C|1|0.83|ENSG00000025796|chr6:107921876-107921876|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	366.6451416015625	3	365.87921	1094.6158	0.28261	0.0001034	-0.35087	-0.00012838	-0.068259	-2.4974E-05	365.87903554134544	31.731	0.8163	31.731	31.414	32.231	0					26	15	3	0	0	0	0.62767	1	10127	10127		16.149	3.9744	1	12583000	+		49636	27934	36106	36395	48501	48501					0.07227833156389352
SLLDDLHSA	9	Unmodified	_SLLDDLHSA_					0	0	0		ENSG00000162378|ENST00000294353|ZYG11B;nc|ENSG00000162378|Q9C0D3-2|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	MULTI-SECPEP	A375_MHC_IP_R1	1	486.1454162597656	2	485.745639	969.476725	-0.32304	-0.00015692	-0.505	-0.0002453	-0.82804	-0.00040222	485.7456085659711	76.439	0.70911	76.439	76.067	76.776	0					44	13	5	0	0	0	0.047455	1	27847	27847		78.149	23.376	1	14274000			49637	6522	36107	36396	48502	48502					-0.009234132074311674
SLLDDLHSA	9	Unmodified	_SLLDDLHSA_					0	0	0		ENSG00000162378|ENST00000294353|ZYG11B;nc|ENSG00000162378|Q9C0D3-2|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	485.745639	969.476725	-0.60169	-0.00029227	-0.58161	-0.00028252	-1.1833	-0.00057478	485.7455270691734	75.665	0.66388	76.405	76.078	76.742	0.74052	-0.016704	-3.635E-05	NaN	78.149	49	12	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21678000			49638	6522	36107	36396							-0.009234132074311674
SLLDEFYKL	9	Unmodified	_SLLDEFYKL_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-SECPEP	A375_MHC_IP_R1	1	564.7026977539062	2	564.30279	1126.59103	0.0038683	2.1829E-06	-0.30918	-0.00017447	-0.30531	-0.00017229	564.3025563163811	126.74	0.55777	126.74	126.61	127.16	0					28	10	5	0	0	0	0.011151	1	48458	48458		165.72	100.49	1	150780000			49639	4678	36108	36397	48503	48503					0.032794765546668714
SLLDEFYKL	9	Unmodified	_SLLDEFYKL_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-SECPEP	A375_MHC_IP_R2	2	564.702392578125	2	564.30279	1126.59103	-0.44594	-0.00025165	1.7814	0.0010052	1.3355	0.0007536	564.303806733636	126.41	0.40346	126.71	126.53	126.93	0.2951					23	7	5	0	0	0	0.011151	1	49455	49455		152.89	96.709	1	196680000			49640	4678	36108	36397	48504	48504					0.032794765546668714
SLLDELLEV	9	Unmodified	_SLLDELLEV_					0	0	0		ENSG00000057252|ENST00000367619|SOAT1;nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1	ENSG00000057252|ENST00000367619|SOAT1	ENSG00000057252|ENST00000367619|SOAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1866455078125	2	515.786973	1029.55939	-0.84045	-0.00043349	0.36705	0.00018932	-0.4734	-0.00024417	515.7869778974772	137.05	0.30905	137.05	136.87	137.18	0					11	5	3	0	0	0	0.040439	1	52772	52772		92.822	18.399	1	2793500			49641	1282	36109	36398	48505	48505					0.04579483800716844
SLLDELLEV	9	Unmodified	_SLLDELLEV_					0	0	0		ENSG00000057252|ENST00000367619|SOAT1;nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1	ENSG00000057252|ENST00000367619|SOAT1	ENSG00000057252|ENST00000367619|SOAT1	MULTI-SECPEP	A375_MHC_IP_R2	2	516.1866455078125	2	515.786973	1029.55939	-0.58717	-0.00030285	0.36141	0.00018641	-0.22576	-0.00011644	515.7870419190602	136.94	0.25734	137.05	136.92	137.17	0.11134					10	4	3	0	0	0	0.061132	1	53785	53785		77.984	10.64	1	2870800			49642	1282	36109	36398	48506	48506					0.04579483800716844
SLLDELSGR	9	Unmodified	_SLLDELSGR_					0	0	0			REV__ENSG00000110237|ENST00000263674|ARHGEF17	REV__ENSG00000110237|ENST00000263674|ARHGEF17	MSMS	A375_MHC_IP_R1	1	495.1763610839844	2	495.266739	988.518924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.43	1	83.43	82.93	83.93	0								0	0	0	0.12568	1	30529	30529		34.102	7.2188	1		+		49643	17621	36110	36399	48507	48507					0.024205622009503713
SLLDESPSY	9	Unmodified	_SLLDESPSY_					0	0	0			REV__ENSG00000151320|ENST00000280979|AKAP6	REV__ENSG00000151320|ENST00000280979|AKAP6	MULTI-MSMS	A375_MHC_IP_R1	1	505.6690979003906	2	505.73748	1009.46041	-0.24654	-0.00012468	-0.65939	-0.00033348	-0.90593	-0.00045816	505.7367025258215	56.42	0.45611	56.42	56.092	56.548	0					14	8	2	0	0	0	0.55818	1	20214	20214		16.942	0	1	1015400	+		49644	19747	36111	36400	48508	48508					-0.043945391641841525
SLLDEVLNV	9	Unmodified	_SLLDEVLNV_					0	0	0		ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	MULTI-SECPEP	A375_MHC_IP_R1	1	501.6792297363281	2	501.279315	1000.54408	-0.61994	-0.00031076	0.51205	0.00025668	-0.10789	-5.4082E-05	501.27951583100395	132.21	0.3007	132.21	132.03	132.33	0					8	5	2	0	0	0	0.3607	1	51000	51000		42.095	25.152	1	6201500			49645	6636	36112	36401	48509	48509					0.04382617003534506
SLLDEVLNV	9	Unmodified	_SLLDEVLNV_					0	0	0		ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	MULTI-MSMS	A375_MHC_IP_R2	2	501.6790771484375	2	501.279315	1000.54408	-0.56182	-0.00028163	0.25597	0.00012831	-0.30585	-0.00015331	501.27938087596226	132.04	0.25119	132.23	132.05	132.3	0.18953					6	4	2	0	0	0	0.098973	1	51968	51968		50.855	22.368	1	4306500			49646	6636	36112	36401	48510	48510					0.04382617003534506
SLLDGGLRHW	10	Unmodified	_SLLDGGLRHW_					0	0	0		nc|ENSG00000128309|P25325|MPST;ENST00000485587.1_1_22:37419962-37421138:+|nuORF;ENSG00000128309|ENST00000429360|MPST	nc|ENSG00000128309|P25325|MPST	nc|ENSG00000128309|P25325|MPST	MULTI-SECPEP	A375_MHC_IP_R1	1	577.1985473632812	2	577.309272	1152.60399	-0.38052	-0.00021968	-0.34166	-0.00019725	-0.72219	-0.00041693	578.3119155253286	68.464	0.50806	68.464	68.209	68.717	0					19	9	3	0	0	0	0.83355	1	24729	24729		17.113	0	1	1842800			49647	4131	36113	36402	48511	48511					0.03379352457409368
SLLDGHFVL	9	Unmodified	_SLLDGHFVL_					0	0	0		ENST00000535644.1_1_11:67163166-67165027:+|nuORF;ENST00000538013.5_1_11:67160139-67164890:+|nuORF;ENSG00000172613|ENST00000307980|RAD9A	ENST00000535644.1_1_11:67163166-67165027:+|nuORF	ENST00000535644.1_1_11:67163166-67165027:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.1769714355469	2	500.776742	999.538931	-0.15757	-7.8908E-05	-0.13147	-6.5837E-05	-0.28904	-0.00014474	500.77634521806146	117.29	0.505	117.29	117.01	117.51	0					15	9	2	0	0	0	0.060021	1	43154	43154		60.39	28.084	1	10908000			49648	7725	36114	36403	48512	48512					0.03914357931569157
SLLDGHFVL	9	Unmodified	_SLLDGHFVL_					0	0	0		ENST00000535644.1_1_11:67163166-67165027:+|nuORF;ENST00000538013.5_1_11:67160139-67164890:+|nuORF;ENSG00000172613|ENST00000307980|RAD9A	ENST00000535644.1_1_11:67163166-67165027:+|nuORF	ENST00000535644.1_1_11:67163166-67165027:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	501.1757507324219	2	500.776742	999.538931	-0.41983	-0.00021024	-0.20226	-0.00010129	-0.62209	-0.00031153	500.7762493402953	116.27	0.45927	116.93	116.77	117.23	0.65961					11	8	2	0	0	0	0.0093345	1	43948	43948		104.8	41.236	1	8022600			49649	7725	36114	36403	48513	48513					0.03914357931569157
SLLDGVVEKL	10	Unmodified	_SLLDGVVEKL_					0	0	0		nc|ENSG00000090316|Q7L5Y9-3|MAEA;ENSG00000090316|ENST00000303400|MAEA;ENST00000503693.1_1_4:1283701-1322488:+|nuORF;nc|ENSG00000090316|Q7L5Y9-5|MAEA;nc|ENSG00000090316|Q7L5Y9-4|MAEA;nc|ENSG00000090316|Q7L5Y9-2|MAEA	nc|ENSG00000090316|Q7L5Y9-3|MAEA	nc|ENSG00000090316|Q7L5Y9-3|MAEA	MULTI-SECPEP	A375_MHC_IP_R1	1	537.2158203125	2	536.816064	1071.61758	-0.45295	-0.00024315	0.87208	0.00046815	0.41914	0.000225	536.816108940206	108.95	0.50523	108.95	108.61	109.12	0					17	9	3	0	0	0	0.64789	1	39988	39988		38.615	9.5332	1	1807700			49650	1949	36115	36404	48514	48514					0.08463165446005405
SLLDGVVEKL	10	Unmodified	_SLLDGVVEKL_					0	0	0		nc|ENSG00000090316|Q7L5Y9-3|MAEA;ENSG00000090316|ENST00000303400|MAEA;ENST00000503693.1_1_4:1283701-1322488:+|nuORF;nc|ENSG00000090316|Q7L5Y9-5|MAEA;nc|ENSG00000090316|Q7L5Y9-4|MAEA;nc|ENSG00000090316|Q7L5Y9-2|MAEA	nc|ENSG00000090316|Q7L5Y9-3|MAEA	nc|ENSG00000090316|Q7L5Y9-3|MAEA	MULTI-SECPEP	A375_MHC_IP_R2	2	537.216064453125	2	536.816064	1071.61758	-0.88799	-0.00047669	1.026	0.00055078	0.13803	7.4096E-05	536.8161483266567	108.01	0.41045	108.76	108.51	108.92	0.75436					13	7	2	0	0	0	0.54012	1	40815	40815		38.615	15.878	1	1585100			49651	1949	36115	36404	48515	48515					0.08463165446005405
SLLDIIEKV	9	Unmodified	_SLLDIIEKV_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	A375_MHC_IP_R1	1	515.712890625	2	515.313158	1028.61176	-0.33975	-0.00017508	0.73244	0.00037743	0.39269	0.00020236	515.3135002365857	128.1	0.70771	128.1	127.92	128.63	0					38	13	5	0	0	0	0.0078574	1	49156	49156		168.54	61.438	1	592460000			49652	2430	36116	36405	48516	48516					0.098600669343341
SLLDIIEKV	9	Unmodified	_SLLDIIEKV_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	A375_MHC_IP_R2	2	1029.81298828125	1	1029.61904	1028.61176	-0.0085393	-8.7922E-06	1.4035	0.0014451	1.395	0.0014363	1029.6200409332666	127.78	0.2527	128.04	127.97	128.22	0.26592					9	4	3	0	0	0	0.0094735	1	50141	50141		107.1	21.458	1	73641000			49653	2430	36116	36405	48517	48517					0.098600669343341
SLLDIIEKV	9	Unmodified	_SLLDIIEKV_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	A375_MHC_IP_R2	2	515.7123413085938	2	515.313158	1028.61176	-0.8114	-0.00041812	0.79018	0.00040719	-0.021218	-1.0934E-05	515.3135493448156	127.78	0.81363	128.04	127.87	128.68	0.26593					46	15	5	0	0	0	0.0020207	2	50155	50155;50164		168.54	54.336	1	615780000			49654	2430	36116	36405	48518;48519	48518					0.098600669343341
SLLDIIEKV	9	Unmodified	_SLLDIIEKV_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-MATCH	A375_MHC_IP_R1	1		1	1029.61904	1028.61176	0.36386	0.00037464	0.94331	0.00097124	1.3072	0.0013459	1029.6200671317526	128.05	0.30399	128.05	127.97	128.28	0	0.0022411	-0.00012784	NaN	107.1	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37653000			49655	2430	36116	36405							0.098600669343341
SLLDLEQKL	9	Unmodified	_SLLDLEQKL_					0	0	0		ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	MULTI-MSMS	A375_MHC_IP_R1	1	530.20849609375	2	529.808239	1057.60193	-0.50129	-0.00026559	0.10514	5.5706E-05	-0.39615	-0.00020988	529.8082524464975	97.832	0.76067	97.832	97.44	98.2	0					38	14	4	0	0	0	0.0020207	1	35891	35891		155.95	37.885	1	9513700			49656	1128	36117	36406	48520	48520					0.07542878928961727
SLLDLEQKL	9	Unmodified	_SLLDLEQKL_					0	0	0		ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	MULTI-SECPEP	A375_MHC_IP_R2	2	530.20751953125	2	529.808239	1057.60193	-0.75517	-0.00040009	-0.3187	-0.00016885	-1.0739	-0.00056895	529.8079833325942	96.939	0.70727	97.695	97.318	98.025	0.75586					35	13	3	0	0	0	0.025037	1	36764	36764		100.09	30.986	1	11126000			49657	1128	36117	36406	48521	48521					0.07542878928961727
SLLDLHCWI	9	Unmodified	_SLLDLHCWI_					0	0	0		ENST00000395878.7_1_16:23585535-23585652:+|nuORF	ENST00000395878.7_1_16:23585535-23585652:+|nuORF	ENST00000395878.7_1_16:23585535-23585652:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	550.7391357421875	2	550.283877	1098.5532	-0.74126	-0.00040791	-4.2301	-0.0023278	-4.9714	-0.0027357	550.7820585232229	91.057	0.25266	91.057	90.946	91.199	0					6	4	2	0	0	0	0.27715	1	33472	33472		32.305	4.6767	1	640630			49658	11480	36118	36407	48522	48522					0.007866870882025978
SLLDLHTKV	9	Unmodified	_SLLDLHTKV_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	A375_MHC_IP_R1	1	513.7030029296875	2	513.303124	1024.5917	-0.53385	-0.00027403	-0.13241	-6.7964E-05	-0.66626	-0.00034199	513.3029903485217	59.072	0.56074	59.072	58.836	59.397	0					23	10	3	0	0	0	0.054506	1	21215	21215		73.196	29.214	1	7211700			49659	3688	36119	36408	48523	48523					0.0803831599437217
SLLDLHTKV	9	Unmodified	_SLLDLHTKV_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	A375_MHC_IP_R2	2	513.7019653320312	2	513.303124	1024.5917	-1.0279	-0.00052761	-0.24634	-0.00012645	-1.2742	-0.00065406	513.3029736861133	58.088	0.6588	58.837	58.578	59.237	0.74894					21	12	3	0	0	0	0.027055	1	21957	21957		100.71	52.96	1	5014000			49660	3688	36119	36408	48524	48524					0.0803831599437217
SLLDNFEWN	9	Unmodified	_SLLDNFEWN_					0	0	0		nc|ENSG00000249948|Q9H227-2|GBA3;nc|ENSG00000249948|Q9H227|GBA3	nc|ENSG00000249948|Q9H227-2|GBA3	nc|ENSG00000249948|Q9H227-2|GBA3	MULTI-SECPEP	A375_MHC_IP_R1	1	379.2804260253906	3	379.845223	1136.51384	0.25978	9.8677E-05	-0.13882	-5.2732E-05	0.12096	4.5946E-05	379.8449038055762	33.216	0.20155	33.216	33.09	33.291	0					5	3	2	0	0	0	0.76187	1	10821	10821		2.2828	0	1	954360			49661	14921	36120	36409	48525	48525					-0.048957416616758564
SLLDNMIGV	9	Unmodified	_SLLDNMIGV_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;MYO1B|p.L1009Pfs*6|1|0.14|ENSG00000128641|chr2:191414529-191414530|-/T|frameshift_variant;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.T8I|1|0.54|ENSG00000128641|chr2:191276918-191276918|C/T|missense_variant;ENST00000471904.1_1_2:192128111-192215016:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-SECPEP	A375_MHC_IP_R1	1	481.6545104980469	2	481.254785	960.495018	-0.39756	-0.00019133	-0.22885	-0.00011013	-0.62641	-0.00030146	481.25469937312596	128.86	0.3067	128.86	128.68	128.99	0					7	5	2	0	0	0	0.62767	1	49547	49547		16.942	5.302	1	3669000			49662	14591	36121	36410	48526	48526					0.013190054429401243
SLLDNMIGV	9	Unmodified	_SLLDNMIGV_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;MYO1B|p.L1009Pfs*6|1|0.14|ENSG00000128641|chr2:191414529-191414530|-/T|frameshift_variant;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.T8I|1|0.54|ENSG00000128641|chr2:191276918-191276918|C/T|missense_variant;ENST00000471904.1_1_2:192128111-192215016:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MATCH	A375_MHC_IP_R2	2		2	481.254785	960.495018	-0.63352	-0.00030488	-0.70696	-0.00034023	-1.3405	-0.00064511	481.2542831643734	128.59	0.20299	128.83	128.71	128.91	0.23946	-0.014166	-0.00030396	NaN	34.102	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2494200			49663	14591	36121	36410							0.013190054429401243
SLLDPVPEV	9	Unmodified	_SLLDPVPEV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	A375_MHC_IP_R1	1	485.16864013671875	2	484.768583	967.522613	0.16994	8.2383E-05	-0.034937	-1.6936E-05	0.13501	6.5446E-05	484.7684776018936	114.9	0.86092	114.9	114.52	115.38	0					43	16	4	0	0	0	4.7507E-08	1	42070	42070		223.6	43.594	1	29479000			49664	1916	36122	36411	48527	48527					0.03755231974810158
SLLDPVPEV	9	Unmodified	_SLLDPVPEV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	A375_MHC_IP_R2	2	485.168212890625	2	484.768583	967.522613	-0.38865	-0.00018841	-0.0017936	-8.6946E-07	-0.39044	-0.00018928	484.7685158992868	114	1.0093	114.71	114.38	115.39	0.70985					49	19	3	0	0	0	0.00028503	2	42934	42934;43194		205.38	40.87	1	56637000			49665	1916	36122	36411	48528;48529	48528					0.03755231974810158
SLLDPVPEV	9	Unmodified	_SLLDPVPEV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	A375_MHC_IP_R2	2	968.3990478515625	1	968.529889	967.522613	0.14083	0.0001364	0.0015884	1.5384E-06	0.14242	0.00013794	968.5298188771745	114	1.7744	114.71	114.28	116.06	0.70985					86	34	5	0	0	0	0.011017	1	42901	42901		123.45	19.702	1	362590000			49666	1916	36122	36411	48530	48530					0.03755231974810158
SLLDPVPEV	9	Unmodified	_SLLDPVPEV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MATCH	A375_MHC_IP_R1	1		1	968.529889	967.522613	0.55636	0.00053885	0.29738	0.00028802	0.85373	0.00082687	968.5301498578159	114.85	1.8279	114.85	114.41	116.24	0	0.068759	9.0736E-05	NaN	123.45	93	35	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	358710000			49667	1916	36122	36411							0.03755231974810158
SLLDSCTKL	9	Carbamidomethyl (C)	_SLLDSC(Carbamidomethyl (C))TKL_	SLLDSC(1)TKL		SLLDSC(55)TKL		0	1	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MULTI-MSMS	A375_MHC_IP_R2	2	518.6946411132812	2	518.7708	1035.52705	-1.0054	-0.00052155	-0.047743	-2.4767E-05	-1.0531	-0.00054631	518.7708081544482	61.18	0.75543	61.925	61.566	62.322	0.74503					44	14	4	0	0	0	0.074562	1	23220	23220		55.235	17.059	1	21232000			49668	3312	36123	36412	48531	48531	24				0.010703731260491622
SLLECLRQSVV	11	Unmodified	_SLLECLRQSVV_					0	0	0			REV__AP2A2|p.A926V|1|0.6|ENSG00000183020|chr11:1010582-1010582|C/T|missense_variant	REV__AP2A2|p.A926V|1|0.6|ENSG00000183020|chr11:1010582-1010582|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	416.6430969238281	3	416.232312	1245.67511	-0.2994	-0.00012462	-0.48808	-0.00020316	-0.78748	-0.00032778	416.23224458012885	38.787	0.30706	39.562	39.453	39.76	0.77451					6	5	2	0	0	0	0.9836	1	14367	14367		3.8459	0	1	902740	+		49669	15419	36124	36413	48532	48532					0.06209684379905411
SLLEDYQHCR	10	Unmodified	_SLLEDYQHCR_					0	0	0			REV__ENST00000510927.5_1_4:106967729-107168455:-|nuORF	REV__ENST00000510927.5_1_4:106967729-107168455:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	422.1708679199219	3	421.8644	1262.57137	-0.064377	-2.7158E-05	0.49923	0.00021061	0.43485	0.00018345	421.8645427782657	77.022	0.66371	77.022	76.673	77.336	0					28	12	3	0	0	0	0.71364	1	27974	27974		6.1918	0.40842	1	2485400	+		49670	19471	36125	36414	48533	48533					-0.04941222727757122
SLLEERFRV	9	Unmodified	_SLLEERFRV_					0	0	0		ENSG00000005075|ENST00000292614|POLR2J;ENST00000326391.6_1_7:44054045-44058742:-|nuORF	ENSG00000005075|ENST00000292614|POLR2J	ENSG00000005075|ENST00000292614|POLR2J	MULTI-MSMS	A375_MHC_IP_R1	1	383.9526062011719	3	383.552262	1147.63496	0.28126	0.00010788	-0.03058	-1.1729E-05	0.25068	9.6148E-05	383.55222835379215	64.188	0.65857	64.188	63.939	64.597	0					26	12	3	0	0	0	0.23226	1	23201	23201		35.612	17.749	1	4986100			49671	882	36126	36415	48534	48534					0.06704505771654112
SLLEERFRV	9	Unmodified	_SLLEERFRV_					0	0	0		ENSG00000005075|ENST00000292614|POLR2J;ENST00000326391.6_1_7:44054045-44058742:-|nuORF	ENSG00000005075|ENST00000292614|POLR2J	ENSG00000005075|ENST00000292614|POLR2J	MULTI-SECPEP	A375_MHC_IP_R1	1	575.2247924804688	2	574.824755	1147.63496	-0.22048	-0.00012673	0.094996	5.4606E-05	-0.12548	-7.2129E-05	574.8247868166477	64.194	0.55684	64.194	63.939	64.495	0					20	10	3	0	0	0	0.56537	1	23220	23220		29.082	8.628	1	2139600			49672	882	36126	36415	48535	48535					0.06704505771654112
SLLEERFRV	9	Unmodified	_SLLEERFRV_					0	0	0		ENSG00000005075|ENST00000292614|POLR2J;ENST00000326391.6_1_7:44054045-44058742:-|nuORF	ENSG00000005075|ENST00000292614|POLR2J	ENSG00000005075|ENST00000292614|POLR2J	MULTI-MSMS	A375_MHC_IP_R2	2	383.952392578125	3	383.552262	1147.63496	-0.056965	-2.1849E-05	0.10467	4.0146E-05	0.047705	1.8297E-05	383.55227738227654	63.272	0.71218	64.012	63.682	64.394	0.74022					28	13	3	0	0	0	0.23226	1	23956	23956		35.612	15.031	1	5845000			49673	882	36126	36415	48536	48536					0.06704505771654112
SLLEERFRV	9	Unmodified	_SLLEERFRV_					0	0	0		ENSG00000005075|ENST00000292614|POLR2J;ENST00000326391.6_1_7:44054045-44058742:-|nuORF	ENSG00000005075|ENST00000292614|POLR2J	ENSG00000005075|ENST00000292614|POLR2J	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	574.824755	1147.63496	-0.15875	-9.1252E-05	-0.60242	-0.00034629	-0.76117	-0.00043754	574.8244858440019	63.222	0.45616	63.964	63.788	64.244	0.74263	-0.115	-0.00050249	NaN	29.082	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2407900			49674	882	36126	36415							0.06704505771654112
SLLEFNTTV	9	Unmodified	_SLLEFNTTV_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	A375_MHC_IP_R1	1	512.6708984375	2	512.27149	1022.52843	-0.25502	-0.00013064	-0.27898	-0.00014291	-0.534	-0.00027355	512.271203650244	111.79	0.86516	111.79	111.41	112.28	0					37	16	4	0	0	0	0.0096822	1	40945	40945		110.55	31.825	1	6565800			49675	9113	36127	36416	48537	48537					0.018063304864767815
SLLEFNTTV	9	Unmodified	_SLLEFNTTV_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-SECPEP	A375_MHC_IP_R1	1	1022.9788818359375	1	1023.5357	1022.52843	0.3932	0.00040246	-0.60967	-0.00062402	-0.21647	-0.00022156	1023.5349071440388	111.82	1.0219	111.82	111.05	112.08	0					34	19	3	0	0	0	5.1125E-05	1	40984	40984		187.3	60.73	1	9693200			49676	9113	36127	36416	48538	48538					0.018063304864767815
SLLEFNTTV	9	Unmodified	_SLLEFNTTV_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	A375_MHC_IP_R2	2	512.67138671875	2	512.27149	1022.52843	-0.58127	-0.00029777	0.12014	6.1542E-05	-0.46113	-0.00023623	512.271441340986	110.93	0.86781	111.67	111.34	112.21	0.73692					37	16	4	0	0	0	0.0099679	1	41805	41805		121.53	52.429	1	7774500			49677	9113	36127	36416	48539	48539					0.018063304864767815
SLLEFNTTV	9	Unmodified	_SLLEFNTTV_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-SECPEP	A375_MHC_IP_R2	2	1023.8743896484375	1	1023.5357	1022.52843	0.20494	0.00020976	-0.24	-0.00024565	-0.035059	-3.5884E-05	1023.5353105017466	110.94	0.81487	111.67	111.19	112.01	0.73692					28	15	3	0	0	0	5.1125E-05	1	41843	41843		187.3	76.622	1	9634000			49678	9113	36127	36416	48540	48540					0.018063304864767815
SLLEHFNTV	9	Unmodified	_SLLEHFNTV_					0	0	0		nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;ENSG00000104447|ENST00000395715|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	MULTI-SECPEP	A375_MHC_IP_R1	1	530.6768188476562	2	530.277106	1058.53966	-0.57106	-0.00030282	-0.26071	-0.00013825	-0.83177	-0.00044107	530.2770130716666	75.119	0.80923	75.119	74.604	75.413	0					20	15	2	0	0	0	0.13208	1	27343	27343		66.457	28.483	1	3261000			49679	2514	36128	36417	48541	48541					0.012731525806202626
SLLEHFNTV	9	Unmodified	_SLLEHFNTV_					0	0	0		nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;ENSG00000104447|ENST00000395715|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	MULTI-SECPEP	A375_MHC_IP_R2	2	530.6766967773438	2	530.277106	1058.53966	-0.62064	-0.00032911	-0.040804	-2.1637E-05	-0.66144	-0.00035075	530.2772383120132	74.227	0.60958	74.965	74.604	75.214	0.73751					21	11	3	0	0	0	0.03341	1	28152	28152		93.166	51.326	1	3034500			49680	2514	36128	36417	48542	48542					0.012731525806202626
SLLEKEHDL	9	Unmodified	_SLLEKEHDL_					0	0	0		ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1	ENSG00000115504|ENST00000431489|EHBP1	ENSG00000115504|ENST00000431489|EHBP1	MSMS	A375_MHC_IP_R1	1	542.1749267578125	2	542.287671	1082.56079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.48	1	131.48	130.98	131.98	0								0	0	0	0.14677	1	50690	50690		26.884	3.7352	1				49681	3314	36129	36418	48543	48543					0.02281117889469897
SLLEKLSAL	9	Unmodified	_SLLEKLSAL_					0	0	0		ENST00000487055.1_1_5:132036305-132039285:-|nuORF;nc|ENSG00000131437|Q9Y496|KIF3A;ENSG00000131437|ENST00000403231|KIF3A	ENST00000487055.1_1_5:132036305-132039285:-|nuORF	ENST00000487055.1_1_5:132036305-132039285:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	487.7000732421875	2	487.30005	972.585547	-0.20144	-9.816E-05	0.06945	3.3843E-05	-0.13199	-6.4317E-05	487.3000902518941	101.35	0.45674	101.35	101.04	101.5	0					12	8	2	0	0	0	0.31062	1	37282	37282		29.841	0.759	1	1006500			49682	4329	36130	36419	48544	48544					0.09815797762848888
SLLEKLSAL	9	Unmodified	_SLLEKLSAL_					0	0	0		ENST00000487055.1_1_5:132036305-132039285:-|nuORF;nc|ENSG00000131437|Q9Y496|KIF3A;ENSG00000131437|ENST00000403231|KIF3A	ENST00000487055.1_1_5:132036305-132039285:-|nuORF	ENST00000487055.1_1_5:132036305-132039285:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	487.30005	972.585547	-0.38693	-0.00018855	0.50759	0.00024735	0.12065	5.8794E-05	487.3002733362105	100.43	0.46098	101.2	100.83	101.29	0.76277	-0.076269	0.00013695	NaN	29.841	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	560290			49683	4329	36130	36419							0.09815797762848888
SLLEKSLGL	9	Unmodified	_SLLEKSLGL_					0	0	0		nc|ENSG00000124802|O43324-2|EEF1E1;ENSG00000124802|ENST00000379715|EEF1E1	nc|ENSG00000124802|O43324-2|EEF1E1	nc|ENSG00000124802|O43324-2|EEF1E1	MULTI-MSMS	A375_MHC_IP_R1	1	480.6920166015625	2	480.292225	958.569897	-0.61448	-0.00029513	0.21748	0.00010445	-0.397	-0.00019068	480.292246222713	85.591	1.3708	85.591	85.005	86.376	0					70	26	4	0	0	0	0.0098082	1	31468	31468		114.19	17.82	1	23485000			49684	3934	36131	36420	48545	48545					0.08895511245816579
SLLEKSLGL	9	Unmodified	_SLLEKSLGL_					0	0	0		nc|ENSG00000124802|O43324-2|EEF1E1;ENSG00000124802|ENST00000379715|EEF1E1	nc|ENSG00000124802|O43324-2|EEF1E1	nc|ENSG00000124802|O43324-2|EEF1E1	MULTI-MSMS	A375_MHC_IP_R2	2	480.6922607421875	2	480.292225	958.569897	-0.45985	-0.00022086	0.068337	3.2822E-05	-0.39152	-0.00018804	480.29218880198454	84.624	1.4764	85.36	84.762	86.239	0.73602					76	28	4	0	0	0	0.0042961	1	32223	32223		136.39	20.7	1	18921000			49685	3934	36131	36420	48546	48546					0.08895511245816579
SLLELAALSI	10	Unmodified	_SLLELAALSI_					0	0	0			REV__nc|ENSG00000170471|Q86X10-2|RALGAPB;REV__nc|ENSG00000170471|Q86X10-4|RALGAPB	REV__nc|ENSG00000170471|Q86X10-2|RALGAPB	MULTI-SECPEP	A375_MHC_IP_R1	1	515.6944580078125	2	515.313158	1028.61176	-0.40844	-0.00021047	-1.1251	-0.00057979	-1.5336	-0.00079026	515.3126518959535	79.208	0.25416	79.208	79.011	79.265	0					6	4	2	0	0	0	0.24752	1	28905	28905		45.7	0	1	801300	+		49686	20997;27352	36132	36421	48547	48547					0.098600669343341
SLLELYKTP	9	Unmodified	_SLLELYKTP_					0	0	0			REV__ENSG00000183914|ENST00000572933|DNAH2	REV__ENSG00000183914|ENST00000572933|DNAH2	MULTI-MSMS	A375_MHC_IP_R1	1	532.7047119140625	2	532.305332	1062.59611	-0.87321	-0.00046482	-0.45786	-0.00024372	-1.3311	-0.00070853	532.3048481707947	132.56	0.76627	132.56	132.38	133.15	0					28	14	4	0	0	0	0.05754	1	51103	51103		61.357	13.012	1	24252000	+		49687	21788	36133	36422	48548	48548					0.06731780417271693
SLLELYKTP	9	Unmodified	_SLLELYKTP_					0	0	0			REV__ENSG00000183914|ENST00000572933|DNAH2	REV__ENSG00000183914|ENST00000572933|DNAH2	MULTI-MSMS	A375_MHC_IP_R2	2	532.7047119140625	2	532.305332	1062.59611	-0.65092	-0.00034649	-0.51514	-0.00027421	-1.1661	-0.0006207	532.3049187980807	132.34	0.46223	132.53	132.4	132.87	0.18953					24	8	4	0	0	0	0.030038	1	52064	52064		74.929	10.693	1	29772000	+		49688	21788	36133	36422	48549	48549					0.06731780417271693
SLLELYKTP	9	Unmodified	_SLLELYKTP_					0	0	0			REV__ENSG00000183914|ENST00000572933|DNAH2	REV__ENSG00000183914|ENST00000572933|DNAH2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	532.305332	1062.59611	-0.65092	-0.00034649	-0.51514	-0.00027421	-1.1661	-0.0006207	532.3049187980807	132.34	0.46223	132.53	132.4	132.87	0.18953	-0.014109	-1.3754E-05	NaN	74.929	24	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29772000	+		49689	21788	36133	36422							0.06731780417271693
SLLENIAKA	9	Unmodified	_SLLENIAKA_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	A375_MHC_IP_R1	1	480.1818542480469	2	479.782025	957.549496	-0.20726	-9.9439E-05	0.062944	3.0199E-05	-0.14432	-6.924E-05	479.7820147541781	68.953	0.76093	68.953	68.666	69.427	0					42	14	4	0	0	0	0.0099679	1	24976	24976		121.53	25.168	1	26362000			49690	8598	36134	36423	48550	48550					0.0690234058599799
SLLENIAKA	9	Unmodified	_SLLENIAKA_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-SECPEP	A375_MHC_IP_R2	2	480.1817321777344	2	479.782025	957.549496	-0.46504	-0.00022312	-0.0023816	-1.1426E-06	-0.46743	-0.00022426	479.7819801490729	68.05	1.0144	68.785	68.358	69.373	0.73511					47	19	4	0	0	0	0.010853	1	25715	25715		140.63	29.346	1	27286000			49691	8598	36134	36423	48551	48551					0.0690234058599799
SLLENLEKI	9	Unmodified	_SLLENLEKI_					0	0	0		nc|ENSG00000092199|P07910|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000092199|ENST00000553300|HNRNPC;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000277058|ENST00000617807|HNRNPCL3;HNRNPCL1|p.E212Dfs*7|1|0.23|ENSG00000179172|chr1:12847653-12847654|CC/-|frameshift_variant;nc|ENSG00000092199|P07910-3|HNRNPC;HNRNPCL1|p.V194M|1|0.09|ENSG00000179172|chr1:12847710-12847710|C/T|missense_variant;ENST00000553444.1_1_14:21679384-21680083:-|nuORF	nc|ENSG00000092199|P07910|HNRNPC	nc|ENSG00000092199|P07910|HNRNPC	MULTI-MSMS	A375_MHC_IP_R1	1	530.208251953125	2	529.808239	1057.60193	-0.51667	-0.00027374	-0.00772	-4.0901E-06	-0.52439	-0.00027783	529.8082408788629	102.43	1.5218	102.43	102	103.52	0					89	29	5	0	0	0	0.0099672	1	37774	37774		121.5	3.6657	1	84201000			49692	1998	36135	36424	48552	48552					0.07542878928961727
SLLENLEKI	9	Unmodified	_SLLENLEKI_					0	0	0		nc|ENSG00000092199|P07910|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000092199|ENST00000553300|HNRNPC;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000277058|ENST00000617807|HNRNPCL3;HNRNPCL1|p.E212Dfs*7|1|0.23|ENSG00000179172|chr1:12847653-12847654|CC/-|frameshift_variant;nc|ENSG00000092199|P07910-3|HNRNPC;HNRNPCL1|p.V194M|1|0.09|ENSG00000179172|chr1:12847710-12847710|C/T|missense_variant;ENST00000553444.1_1_14:21679384-21680083:-|nuORF	nc|ENSG00000092199|P07910|HNRNPC	nc|ENSG00000092199|P07910|HNRNPC	MULTI-SECPEP	A375_MHC_IP_R2	2	530.2080078125	2	529.808239	1057.60193	-0.49976	-0.00026478	-0.29022	-0.00015376	-0.78998	-0.00041854	529.808077018769	101.46	1.5762	102.23	101.75	103.33	0.76428					91	30	5	0	0	0	0.0013426	1	38370	38370		154.75	3.2727	1	77968000			49693	1998	36135	36424	48553	48553					0.07542878928961727
SLLEPFDCHD	10	Unmodified	_SLLEPFDCHD_					0	0	0			REV__ENSG00000169727|ENST00000578552|GPS1	REV__ENSG00000169727|ENST00000578552|GPS1	MSMS	A375_MHC_IP_R2	2	588.2286987304688	2	588.255514	1174.49647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.662	1	78.405	77.905	78.905	0.74293								0	0	0	0.15332	1	29490	29490		10.074	1.3285	1		+		49694	20942	36136	36425	48554	48554					-0.08379405258961015
SLLEPPLQL	9	Unmodified	_SLLEPPLQL_					0	0	0		nc|ENSG00000111666|Q8WUD6-2|CHPT1;ENSG00000111666|ENST00000229266|CHPT1;ENST00000546490.1_1_12:102091639-102108044:+|nuORF	nc|ENSG00000111666|Q8WUD6-2|CHPT1	nc|ENSG00000111666|Q8WUD6-2|CHPT1	MULTI-MSMS	A375_MHC_IP_R2	2	505.6997985839844	2	505.30005	1008.58555	-0.72647	-0.00036709	-0.12455	-6.2935E-05	-0.85102	-0.00043002	505.2999532437029	127.42	0.2535	127.69	127.51	127.77	0.26593					7	4	2	0	0	0	0.0096896	1	49987	49987		110.67	62.926	1	4032900			49695	3009	36137	36426	48555	48555					0.0815979776284621
SLLEPPLQL	9	Unmodified	_SLLEPPLQL_					0	0	0		nc|ENSG00000111666|Q8WUD6-2|CHPT1;ENSG00000111666|ENST00000229266|CHPT1;ENST00000546490.1_1_12:102091639-102108044:+|nuORF	nc|ENSG00000111666|Q8WUD6-2|CHPT1	nc|ENSG00000111666|Q8WUD6-2|CHPT1	MULTI-MATCH	A375_MHC_IP_R1	1		2	505.30005	1008.58555	-0.083361	-4.2122E-05	1.8447	0.00093212	1.7613	0.00089	505.30103557728603	127.75	0.20287	127.75	127.62	127.82	0	0.030187	0.0015553	NaN	110.67	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4095900			49696	3009	36137	36426							0.0815979776284621
SLLEQGLVEA	10	Unmodified	_SLLEQGLVEA_					0	0	0		ENSG00000109685|ENST00000508803|NSD2;nc|ENSG00000109685|O96028-6|NSD2;ENST00000508355.5_1_4:1902372-1920392:+|nuORF;nc|ENSG00000109685|O96028-5|NSD2;nc|ENSG00000109685|O96028-3|NSD2;nc|ENSG00000109685|O96028-7|NSD2	ENSG00000109685|ENST00000508803|NSD2	ENSG00000109685|ENST00000508803|NSD2	MULTI-SECPEP	A375_MHC_IP_R1	1	530.1900634765625	2	529.790047	1057.56554	-0.53655	-0.00028426	0.15348	8.131E-05	-0.38307	-0.00020295	529.7901374410087	96.333	0.76304	96.333	95.867	96.63	0					21	14	2	0	0	0	0.20175	1	35432	35432		45.74	15.899	1	2967600			49697	2884	36138	36427	48556	48556					0.03906002032249489
SLLEQGLVEA	10	Unmodified	_SLLEQGLVEA_					0	0	0		ENSG00000109685|ENST00000508803|NSD2;nc|ENSG00000109685|O96028-6|NSD2;ENST00000508355.5_1_4:1902372-1920392:+|nuORF;nc|ENSG00000109685|O96028-5|NSD2;nc|ENSG00000109685|O96028-3|NSD2;nc|ENSG00000109685|O96028-7|NSD2	ENSG00000109685|ENST00000508803|NSD2	ENSG00000109685|ENST00000508803|NSD2	MULTI-SECPEP	A375_MHC_IP_R2	2	530.1737670898438	2	529.790047	1057.56554	-0.43562	-0.00023079	0.42367	0.00022445	-0.011954	-6.3331E-06	529.7899902591978	95.565	0.56133	96.316	95.99	96.551	0.75044					23	10	3	0	0	0	0.20174	1	36282	36282		73.196	21.566	1	3830000			49698	2884	36138	36427	48557	48557					0.03906002032249489
SLLESVQKL	9	Unmodified	_SLLESVQKL_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	A375_MHC_IP_R1	1	508.66314697265625	2	508.802957	1015.59136	-0.25699	-0.00013076	-0.20933	-0.00010651	-0.46632	-0.00023727	508.8029352624538	78.931	2.2923	78.931	77.895	80.187	0					72	38	4	0	0	0	0.0099679	1	28786	28786		121.53	25.168	1	15343000			49699	7927	36139	36428	48558	48558					0.08418896274520193
SLLESVQKL	9	Unmodified	_SLLESVQKL_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	A375_MHC_IP_R2	2	509.20233154296875	2	508.802957	1015.59136	-0.7243	-0.00036852	-0.024485	-1.2458E-05	-0.74878	-0.00038098	508.802906910025	78.01	2.0358	78.753	78.468	80.504	0.74293					49	39	2	0	0	0	0.010931	1	29588	29588		125.04	36.084	1	11531000			49700	7927	36139	36428	48559	48559					0.08418896274520193
SLLETAWL	8	Unmodified	_SLLETAWL_					0	0	0		ENSG00000167173|ENST00000394987|C15orf39;nc|nan|Q6ZRI6-3|C15orf39;ENST00000567617.1_1_15:75501147-75503457:+|nuORF	ENSG00000167173|ENST00000394987|C15orf39	ENSG00000167173|ENST00000394987|C15orf39	MSMS	A375_MHC_IP_R2	2	466.6575927734375	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.84	1	102.61	102.11	103.11	0.76428								0	0	0	0.16876	1	38600	38600		38.151	4.0487	1				49701	7163	36140	36429	48560	48560					0.032992666659424685
SLLEWIQW	8	Unmodified	_SLLEWIQW_					0	0	0			REV__nc|ENSG00000047648|O43182-4|ARHGAP6	REV__nc|ENSG00000047648|O43182-4|ARHGAP6	MULTI-SECPEP	A375_MHC_IP_R2	2	538.2003784179688	2	537.784567	1073.55458	-1.0509	-0.00056516	-3.5944	-0.001933	-4.6453	-0.0024982	537.7835096446693	39.12	0.66503	39.895	39.453	40.118	0.77451					19	12	3	0	0	0	0.69122	1	14442	14442		32.305	7.3145	1	2825400	+		49702	16363	36141	36430	48561	48561					0.020746444486121618
SLLEWIQW	8	Unmodified	_SLLEWIQW_					0	0	0			REV__nc|ENSG00000047648|O43182-4|ARHGAP6	REV__nc|ENSG00000047648|O43182-4|ARHGAP6	MULTI-MATCH	A375_MHC_IP_R1	1		2	537.784567	1073.55458	-0.90134	-0.00048473	-2.5791	-0.001387	-3.4804	-0.0018717	537.7833792194955	39.871	0.45689	39.871	39.643	40.1	0	-0.01208	0.00016313	NaN	32.305	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1408900	+		49703	16363	36141	36430							0.020746444486121618
SLLFGQPWS	9	Unmodified	_SLLFGQPWS_					0	0	0			REV__ENST00000505907.1_1_4:6622067-6622427:+|nuORF	REV__ENST00000505907.1_1_4:6622067-6622427:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	517.7052001953125	2	517.768917	1033.52328	-0.69682	-0.00036079	0.40735	0.00021092	-0.28947	-0.00014988	517.7690604820087	73.229	1.0713	73.964	73.633	74.704	0.73541					33	20	3	0	0	0	0.58047	1	27892	27892		15.847	4.2069	1	4827400	+		49704	25543	36142	36431	48562	48562					0.007860714145181191
SLLFHDSW	8	Unmodified	_SLLFHDSW_					0	0	0			REV__ENST00000397887.7_1_21:46270219-46270474:-|nuORF	REV__ENST00000397887.7_1_21:46270219-46270474:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.7005615234375	2	502.745442	1003.47633	-0.3733	-0.00018767	0.31671	0.00015922	-0.056589	-2.845E-05	502.7452149828355	74.792	0.60783	74.792	74.604	75.211	0					18	11	2	0	0	0	0.972	1	27370	27370		5.2307	0.47466	1	813490	+		49705	24367	36143	36432	48563	48563					-0.02526788136617597
SLLFSFKDGE	10	Unmodified	_SLLFSFKDGE_					0	0	0			REV__ABCA4|p.E833K|1|0.87|ENSG00000198691|chr1:94055201-94055201|C/T|missense_variant	REV__ABCA4|p.E833K|1|0.87|ENSG00000198691|chr1:94055201-94055201|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	571.1712646484375	2	571.790047	1141.56554	-0.38543	-0.00022039	-2.6711	-0.0015273	-3.0565	-0.0017477	572.2913444644648	27.644	0.25223	27.644	27.482	27.735	0					6	4	2	0	0	0	0.83355	1	8411	8411		12.241	4.9514	1	1746400	+		49706	15281	36144	36433	48564	48564					0.0004200203222808341
SLLGFKELY	9	Unmodified	_SLLGFKELY_					0	0	0		UBE3C|p.P1022S|1|0.25|ENSG00000009335|chr7:157257027-157257027|C/T|missense_variant	UBE3C|p.P1022S|1|0.25|ENSG00000009335|chr7:157257027-157257027|C/T|missense_variant	UBE3C|p.P1022S|1|0.25|ENSG00000009335|chr7:157257027-157257027|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	535.6989135742188	2	535.30005	1068.58555	-0.8372	-0.00044815	0.044045	2.3577E-05	-0.79316	-0.00042458	535.2999117718422	82.565	0.60732	83.307	82.94	83.547	0.74293					19	11	2	0	0	0	0.4261	1	31367	31367		30.637	5.2372	1	2435100			49707	30106	36145	36434	48565	48565					0.05399797762856906
SLLGGNIRL	9	Unmodified	_SLLGGNIRL_					0	0	0		ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	MULTI-MSMS	A375_MHC_IP_R1	1	472.18988037109375	2	471.790184	941.565815	-0.61492	-0.00029011	-0.20227	-9.5427E-05	-0.81718	-0.00038554	471.7902174546672	84.841	2.6906	84.841	83.786	86.477	0					93	52	4	0	0	0	0.015701	1	31027	31027		88.954	25.391	1	35035000			49708	3865	36146	36435	48566	48566					0.0926946654275298
SLLGGTLVSA	10	Unmodified	_SLLGGTLVSA_					0	0	0		ENSG00000110628|ENST00000649076|SLC22A18;ENST00000498244.1_1_11:2930522-2930941:+|nuORF	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	MULTI-SECPEP	A375_MHC_IP_R2	2	916.8984375	1	917.530224	916.522947	-0.085488	-7.8438E-05	0.044923	4.1218E-05	-0.040565	-3.722E-05	917.5301433265656	99.794	0.60809	100.56	100.27	100.88	0.76278					24	11	3	0	0	0	0.17241	1	37833	37833		62.573	14.824	1	4916500			49709	2936	36147	36436	48567	48567					0.06134651694674176
SLLGGTLVSA	10	Unmodified	_SLLGGTLVSA_					0	0	0		ENSG00000110628|ENST00000649076|SLC22A18;ENST00000498244.1_1_11:2930522-2930941:+|nuORF	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	MULTI-MATCH	A375_MHC_IP_R1	1		1	917.530224	916.522947	-0.06828	-6.2649E-05	0.11246	0.00010319	0.044183	4.0539E-05	917.530231090172	100.65	0.65849	100.65	100.43	101.09	0	0.0488	2.0264E-05	NaN	62.573	20	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6089900			49710	2936	36147	36436							0.06134651694674176
SLLGHLMIV	9	Unmodified	_SLLGHLMIV_					0	0	0		ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	MULTI-SECPEP	A375_MHC_IP_R1	1	491.1524353027344	2	491.791338	981.568123	-0.14174	-6.9708E-05	0.16231	7.9825E-05	0.020572	1.0117E-05	491.79106632228377	117.59	0.20375	117.59	117.46	117.66	0					5	3	2	0	0	0	0.47368	1	43189	43189		34.102	9.4286	1	2341200			49711	7415	36148	36437	48568	48568					0.07660178956200525
SLLGHLMIV	9	Oxidation (M)	_SLLGHLM(Oxidation (M))IV_		SLLGHLM(1)IV		SLLGHLM(44)IV	0	0	1		ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	MULTI-SECPEP	A375_MHC_IP_R1	1	500.18890380859375	2	499.788795	997.563038	-0.36506	-0.00018245	-0.44489	-0.00022235	-0.80994	-0.0004048	499.78867016159563	100.31	0.50661	100.31	100.03	100.53	0					16	9	2	0	0	0	0.3243	1	36874	36874		44.407	14.182	1	1530600			49712	7415	36148	36438	48569	48569		379			0.06415875093591694
SLLGHLMIV	9	Oxidation (M)	_SLLGHLM(Oxidation (M))IV_		SLLGHLM(1)IV		SLLGHLM(44)IV	0	0	1		ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	MULTI-SECPEP	A375_MHC_IP_R2	2	500.47479248046875	2	499.788795	997.563038	-0.38311	-0.00019147	-0.23515	-0.00011752	-0.61826	-0.000309	499.7886759686258	99.208	0.45872	99.968	99.758	100.22	0.75977					13	8	2	0	0	0	0.20094	1	37622	37622		44.407	12.29	1	1730000			49713	7415	36148	36438	48570	48570		379			0.06415875093591694
SLLGNPRS	8	Unmodified	_SLLGNPRS_					0	0	0			REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2	REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MSMS	A375_MHC_IP_R2	2	422.17071533203125	2	422.237784	842.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.781	1	76.522	76.022	77.022	0.74052								0	0	0	0.16876	1	28766	28766		19.439	0	1		+		49714	17464	36149	36439	48571	48571					0.033483450661947245
SLLGSTLGTA	10	Unmodified	_SLLGSTLGTA_					0	0	0			REV__ENSG00000163393|ENST00000369503|SLC22A15	REV__ENSG00000163393|ENST00000369503|SLC22A15	MULTI-SECPEP	A375_MHC_IP_R1	1	460.6583557128906	2	460.258382	918.502212	-0.32407	-0.00014916	-0.11279	-5.1913E-05	-0.43687	-0.00020107	460.25830488222783	32.116	0.66536	32.116	31.819	32.485	0					22	12	2	0	0	0	0.27864	1	10326	10326		58.679	8.7458	1	6298400	+		49715	20359	36150	36440	48572	48572					0.039700613149989294
SLLGSTRTLIS	11	Unmodified	_SLLGSTRTLIS_					0	0	0			REV__ENST00000542351.5_2_12:6788321-6797908:-|nuORF	REV__ENST00000542351.5_2_12:6788321-6797908:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	574.737548828125	2	574.337695	1146.66084	-0.027664	-1.5889E-05	-0.18354	-0.00010541	-0.2112	-0.0001213	574.3373990343682	138.62	0.45648	138.7	138.37	138.82	0.083969					14	8	3	0	0	0	0.73378	1	54362	54362		5.2969	0.96765	1	1445700	+		49716	25965	36151	36441	48573	48573					0.09337355223283339
SLLGSTRTLIS	11	Unmodified	_SLLGSTRTLIS_					0	0	0			REV__ENST00000542351.5_2_12:6788321-6797908:-|nuORF	REV__ENST00000542351.5_2_12:6788321-6797908:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	574.7369995117188	2	574.337695	1146.66084	-0.20303	-0.00011661	-0.038845	-2.231E-05	-0.24188	-0.00013892	574.3376498813509	131.37	0.56129	131.56	131.39	131.95	0.18954					15	10	2	0	0	0	0.99507	1	51683	51683		4.5289	1.5336	1	4874900	+		49717	25965	36151	36441	48574	48574					0.09337355223283339
SLLGTLITSV	10	Unmodified	_SLLGTLITSV_					0	0	0			REV__ENST00000464036.5_1_1:1190585-1197670:-|nuORF	REV__ENST00000464036.5_1_1:1190585-1197670:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.8716735839844	2	502.305332	1002.59611	-0.35051	-0.00017606	-0.30245	-0.00015192	-0.65296	-0.00032799	502.3051793388202	88.104	0.3564	88.104	87.798	88.154	0					10	6	2	0	0	0	0.91556	1	32344	32344		14.838	0	1	690330	+		49718	20145	36152	36442	48575	48575					0.09491780417283735
SLLGWRRLRRV	11	Unmodified	_SLLGWRRLRRV_					0	0	0			REV__LRP10|p.P567S|1|0.57|ENSG00000197324|chr14:22877084-22877084|C/T|missense_variant	REV__LRP10|p.P567S|1|0.57|ENSG00000197324|chr14:22877084-22877084|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	706.8403930664062	2	706.441486	1410.86842	-0.95374	-0.00067376	-1.0422	-0.00073626	-1.9959	-0.00141	706.4412428592221	144.89	0.24501	144.89	144.72	144.97	0					7	4	2	0	0	0	0.73902	1	55557	55557		0.30703	0	1	211860	+		49719	26945	36153	36443	48576	48576					0.17942027001799943
SLLHGRPQY	9	Unmodified	_SLLHGRPQY_					0	0	0			REV__FOCAD|p.Q1019H|1|0.15|ENSG00000188352|chr9:20926396-20926396|A/T|missense_variant	REV__FOCAD|p.Q1019H|1|0.15|ENSG00000188352|chr9:20926396-20926396|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	358.27642822265625	3	357.529569	1069.56688	-0.66381	-0.00023733	0.035361	1.2642E-05	-0.62845	-0.00022469	357.52946695531	25.605	0.40567	26.265	26.094	26.5	0.65992					13	7	2	0	0	0	0.76187	1	8544	8544		7.609	3.0801	1	1721300	+		49720	26643	36154	36444	48577	48577					0.03487680911666757
SLLIDGPQV	9	Unmodified	_SLLIDGPQV_					0	0	0		ENST00000465215.1_1_3:101659750-101679293:+|nuORF	ENST00000465215.1_1_3:101659750-101679293:+|nuORF	ENST00000465215.1_1_3:101659750-101679293:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	471.6684875488281	2	471.26875	940.522947	-0.60243	-0.00028391	-0.040642	-1.9153E-05	-0.64307	-0.00030306	471.26875363005604	85.289	1.1162	85.289	84.955	86.072	0					54	21	4	0	0	0	0.0070829	1	31210	31210		131.27	1.4953	1	22678000			49721	12237	36155	36445	48578	48578					0.0503065169467618
SLLIRIRKKKK	11	Unmodified	_SLLIRIRKKKK_					0	0	0			REV__ENST00000450917.1_1_2:3523627-3523702:+|nuORF	REV__ENST00000450917.1_1_2:3523627-3523702:+|nuORF	MSMS	A375_MHC_IP_R2	2	692.0291748046875	2	691.987738	1381.96092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.371	1	77.112	76.612	77.612	0.74052								0	0	0	0.16354	1	28995	28995		0.30703	0.30703	1		+		49722	24888	36156	36446	48579	48579					0.28522112015321
SLLKEPQKV	9	Unmodified	_SLLKEPQKV_					0	0	0		nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	MULTI-SECPEP	A375_MHC_IP_R1	1	521.71875	2	521.318774	1040.623	-0.95826	-0.00049956	0.032961	1.7183E-05	-0.9253	-0.00048237	521.3187114029312	29.428	0.25304	29.428	29.302	29.555	0					8	4	3	0	0	0	0.10535	1	9218	9218		75.571	33.615	1	20757000			49723	1056	36157	36447	48580	48580					0.10430889028475576
SLLKEPQKV	9	Unmodified	_SLLKEPQKV_					0	0	0		nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	MULTI-MSMS	A375_MHC_IP_R2	2	521.7178344726562	2	521.318774	1040.623	-1.1827	-0.00061657	-0.4071	-0.00021223	-1.5898	-0.0008288	521.318544035095	28.596	0.30229	29.295	29.132	29.434	0.69872					8	5	2	0	0	0	0.052747	1	9923	9923		63.227	28.826	1	16163000			49724	1056	36157	36447	48581	48581					0.10430889028475576
SLLKEPQKVQL	11	Unmodified	_SLLKEPQKVQL_					0	0	0		nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	MULTI-MSMS	A375_MHC_IP_R1	1	428.6626281738281	3	428.262489	1281.76564	-0.072947	-3.1241E-05	-0.076007	-3.2551E-05	-0.14895	-6.3792E-05	428.26256178248894	51.036	0.40495	51.036	50.814	51.219	0					17	7	3	0	0	0	0.71778	1	18134	18134		14.171	6.2253	1	2057500			49725	1056	36158	36448	48582	48582					0.13602476699861654
SLLKEPQKVQL	11	Unmodified	_SLLKEPQKVQL_					0	0	0		nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	MULTI-MSMS	A375_MHC_IP_R2	2	428.6620788574219	3	428.262489	1281.76564	-0.39194	-0.00016785	0.16152	6.9173E-05	-0.23042	-9.868E-05	428.26260570106325	50.232	0.40523	50.986	50.753	51.159	0.75406					12	7	2	0	0	0	0.72773	1	18884	18884		11.065	3.1199	1	2211400			49726	1056	36158	36448	48583	48583					0.13602476699861654
SLLKFLAKV	9	Unmodified	_SLLKFLAKV_					0	0	0		ENSG00000124260|ENST00000370323|MAGEA10;MAGEA10|p.G320E|1|0.34|ENSG00000124260|chrX:152134662-152134662|C/T|missense_variant	ENSG00000124260|ENST00000370323|MAGEA10	ENSG00000124260|ENST00000370323|MAGEA10	MULTI-SECPEP	A375_MHC_IP_R1	1	510.2361145019531	2	509.836603	1017.65865	-0.39938	-0.00020362	-0.018139	-9.248E-06	-0.41752	-0.00021287	509.8365042484582	89.338	1.3662	89.338	88.919	90.285	0					53	26	3	0	0	0	0.062502	1	32751	32751		83.429	52.16	1	14697000			49727	3891	36159	36449	48584	48584					0.1505297127613403
SLLKFLAKV	9	Unmodified	_SLLKFLAKV_					0	0	0		ENSG00000124260|ENST00000370323|MAGEA10;MAGEA10|p.G320E|1|0.34|ENSG00000124260|chrX:152134662-152134662|C/T|missense_variant	ENSG00000124260|ENST00000370323|MAGEA10	ENSG00000124260|ENST00000370323|MAGEA10	MULTI-MSMS	A375_MHC_IP_R2	2	510.236328125	2	509.836603	1017.65865	-0.67866	-0.00034601	0.1793	9.1411E-05	-0.49937	-0.0002546	509.8365589162328	88.08	1.4191	88.811	88.367	89.786	0.7318					53	27	3	0	0	0	0.030891	1	33434	33434		74.2	36.024	1	11802000			49728	3891	36159	36449	48585	48585					0.1505297127613403
SLLKHQRIHT	10	Unmodified	_SLLKHQRIHT_					0	0	0		ENSG00000198939|ENST00000361362|ZFP2	ENSG00000198939|ENST00000361362|ZFP2	ENSG00000198939|ENST00000361362|ZFP2	MULTI-SECPEP	A375_MHC_IP_R2	2	411.2774353027344	3	411.578923	1231.71494	-0.19429	-7.9966E-05	-0.0071387	-2.9382E-06	-0.20143	-8.2904E-05	411.5787802074788	34.912	0.40312	35.676	35.475	35.878	0.76338					11	7	2	0	0	0	0.92957	1	12689	12689		8.9762	0	1	1267000			49729	9378	36160	36450	48586	48586					0.10834992165518997
SLLKITGIIK	10	Unmodified	_SLLKITGIIK_					0	0	0			REV__tr|U7SU99|U7SU99_FUSNUMFStransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01074PE=4SV=1	REV__tr|U7SU99|U7SU99_FUSNUMFStransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01074PE=4SV=1	MSMS	A375_MHC_IP_R1	1	543.4161376953125	2	543.368267	1084.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.834	1	75.834	75.334	76.334	0								0	0	0	0.15557	1	27632	27632		2.7352	0	1		+		49730	28542	36161	36451	48587	48587					0.1830091199335584
SLLKKLPKVLK	11	Unmodified	_SLLKKLPKVLK_					0	0	0		ENST00000527982.1_1_11:251561-251621:+|nuORF	ENST00000527982.1_1_11:251561-251621:+|nuORF	ENST00000527982.1_1_11:251561-251621:+|nuORF	MSMS	A375_MHC_IP_R1	1	422.9688720703125	3	422.967236	1265.87988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.471	1	19.471	18.971	19.971	0								0	0	0	0.16358	1	4841	4841		0.08335	0	1				49731	13111	36162	36452	48588	48588					0.257574112526072
SLLKKRIRFL	10	Unmodified	_SLLKKRIRFL_					0	0	0		nc|ENSG00000163512|Q9H6S1-3|AZI2;nc|ENSG00000163512|Q9H6S1-5|AZI2;nc|ENSG00000163512|Q9H6S1-4|AZI2;ENST00000463512.5_1_3:28368296-28390095:-|nuORF;ENSG00000163512|ENST00000479665|AZI2	nc|ENSG00000163512|Q9H6S1-3|AZI2	nc|ENSG00000163512|Q9H6S1-3|AZI2	MSMS	A375_MHC_IP_R2	2	425.28662109375	3	425.28708	1272.83941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.355	1	21.974	21.474	22.474	0.61932								0	0	0	0.1562	1	6716	6716		0.69767	0	1				49732	6673	36163	36453	48589	48589					0.21390489652844735
SLLKRLRKA	9	Unmodified	_SLLKRLRKA_					0	0	0		ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	MULTI-MSMS	A375_MHC_IP_R1	1	362.6484375	3	362.248625	1083.72405	-0.064026	-2.3193E-05	-0.38659	-0.00014004	-0.45062	-0.00016323	362.24845701643534	24.017	0.55963	24.017	23.787	24.347	0					20	10	4	0	0	0	0.25114	1	6730	6730		34.222	12.632	1	7733100			49733	3291	36164	36454	48590	48590					0.18553385521863675
SLLKRLRKA	9	Unmodified	_SLLKRLRKA_					0	0	0		ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	MULTI-MSMS	A375_MHC_IP_R2	2	362.6483459472656	3	362.248625	1083.72405	-0.47606	-0.00017245	-0.055782	-2.0207E-05	-0.53184	-0.00019266	362.2485918431216	23.151	0.35631	23.781	23.572	23.928	0.63015					11	6	2	0	0	0	0.10637	1	7408	7408		49.527	21.294	1	5856000			49734	3291	36164	36454	48591	48591					0.18553385521863675
SLLKSFGP	8	Unmodified	_SLLKSFGP_					0	0	0		ENSG00000214929|ENST00000344803|SPATA31D1	ENSG00000214929|ENST00000344803|SPATA31D1	ENSG00000214929|ENST00000344803|SPATA31D1	MSMS	A375_MHC_IP_R1	1	424.6475524902344	2	424.747453	847.480354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.087	1	24.087	23.587	24.587	0								0	0	0	0.16876	1	6748	6748		10.824	2.2306	1				49735	9630	36165	36455	48592	48592					0.05051301357104876
SLLKVLYLK	9	Unmodified	_SLLKVLYLK_					0	0	0			REV__NCK1|p.H375L|1|0.42|ENSG00000158092|chr3:136948443-136948443|A/T|missense_variant	REV__NCK1|p.H375L|1|0.42|ENSG00000158092|chr3:136948443-136948443|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	358.9532775878906	3	359.574116	1075.70052	-0.51843	-0.00018642	-2.2576	-0.00081178	-2.7761	-0.0009982	359.5741977932801	24.441	0.20319	25.085	24.907	25.11	0.64368					5	3	2	0	0	0	0.75519	1	7996	7996		3.8763	1.5936	1	3855100	+		49736	27582	36166	36456	48593	48593					0.16569526964644865
SLLLCHPIPV	10	Unmodified	_SLLLCHPIPV_					0	0	0		ENST00000580828.1_1_17:62223339-62223660:+|nuORF	ENST00000580828.1_1_17:62223339-62223660:+|nuORF	ENST00000580828.1_1_17:62223339-62223660:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	546.9928588867188	2	546.31772	1090.62089	-0.72956	-0.00039857	0.21312	0.00011643	-0.51645	-0.00028214	546.3179704517922	84.33	0.4556	84.33	84.141	84.596	0					14	8	2	0	0	0	0.91556	1	30969	30969		10.074	10.074	1	2375700			49737	13676	36167	36457	48594	48594					0.07920137019004869
SLLLHCLRPLL	11	Unmodified	_SLLLHCLRPLL_					0	0	0			REV__ENST00000401880.1_1_6:104465575-104466139:-|nuORF	REV__ENST00000401880.1_1_6:104465575-104466139:-|nuORF	MSMS	A375_MHC_IP_R1	1	426.6627197265625	3	426.596926	1276.76895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.692	1	41.692	41.192	42.192	0								0	0	0	0.16161	1	14410	14410		10.315	0	1		+		49738	24410	36168	36458	48595	48595					0.14163448272847745
SLLLHPDL	8	Unmodified	_SLLLHPDL_					0	0	0			REV__ENST00000395496.5_1_6:32136507-32136903:-|nuORF	REV__ENST00000395496.5_1_6:32136507-32136903:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	454.6651916503906	2	454.26601	906.517468	-0.22537	-0.00010238	-0.25283	-0.00011485	-0.4782	-0.00021723	454.2658792429514	80.19	2.8417	80.935	80.607	83.449	0.74474					144	55	5	0	0	0	0.5503	1	30824	30824		46.921	0	1	301570000	+		49739	24323	36169	36459	48596	48596					0.06046972902856851
SLLLLKKKKY	10	Unmodified	_SLLLLKKKKY_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-SECPEP	A375_MHC_IP_R2	2	617.7122192382812	2	617.418291	1232.82203	-0.64278	-0.00039687	2.5193	0.0015554	1.8765	0.0011586	617.4192167043431	78.092	0.35604	78.835	78.624	78.98	0.74293					8	6	2	0	0	0	0.94421	1	29657	29657		3.9444	2.2918	1	1252600			49740	2330	36170	36460	48597	48597					0.21493149327170613
SLLLRQRHRR	10	Unmodified	_SLLLRQRHRR_					0	0	0			REV__ENST00000403681.6_2_12:66218024-66218900:+|nuORF	REV__ENST00000403681.6_2_12:66218024-66218900:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	668.526611328125	2	667.915636	1333.81672	-0.74298	-0.00049625	0.7289	0.00048685	-0.014076	-9.4013E-06	667.9160545877223	126	0.7086	126.29	126.02	126.73	0.2951					28	13	3	0	0	0	0.72378	2	49196	49196;49237		1.6526	0.32309	1	11897000	+		49741	24418	36171	36461	48598;48599	48598					0.16316283307924095
SLLLRQRHRR	10	Unmodified	_SLLLRQRHRR_					0	0	0			REV__ENST00000403681.6_2_12:66218024-66218900:+|nuORF	REV__ENST00000403681.6_2_12:66218024-66218900:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	668.526611328125	2	667.915636	1333.81672	-0.74298	-0.00049625	0.7289	0.00048685	-0.014076	-9.4013E-06	667.9160545877223	126	0.7086	126.29	126.02	126.73	0.2951					28	13	3	0	0	0	0.94862	1	49196	49196		1.6526	1.6526	1	11897000	+		49742	24418	36171	36461	48600	48600					0.16316283307924095
SLLMRSIGN	9	Unmodified	_SLLMRSIGN_					0	0	0		ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	MSMS	A375_MHC_IP_R1	1	495.6927185058594	2	495.773677	989.5328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.521	1	40.521	40.021	41.021	0								0	0	0	0.066662	1	13929	13929		49.933	0	1				49743	6215	36172	36462	48601	48601					0.037615164284147795
SLLNIREFI	9	Unmodified	_SLLNIREFI_					0	0	0		ENST00000343776.9_1_1:227842171-227842369:+|nuORF	ENST00000343776.9_1_1:227842171-227842369:+|nuORF	ENST00000343776.9_1_1:227842171-227842369:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	369.5830993652344	3	368.885241	1103.63389	0.28996	0.00010696	0.30171	0.0001113	0.59167	0.00021826	368.8851668231658	42.236	1.072	43.008	42.196	43.268	0.7724					29	20	2	0	0	0	0.76187	1	15489	15489		4.5289	2.2461	1	2658000			49744	10888	36173	36463	48602	48602					0.08622291402753035
SLLNQPKAV	9	Unmodified	_SLLNQPKAV_					0	0	0		nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	MULTI-MSMS	A375_MHC_IP_R2	2	485.6897277832031	2	485.290017	968.565481	-0.59395	-0.00028824	-0.21295	-0.00010334	-0.8069	-0.00039158	485.2898759914586	41.842	0.358	42.616	42.401	42.759	0.77451					11	6	2	0	0	0	0.04447	1	15570	15570		66.457	18.708	1	2276200			49745	2013	36174	36464	48603	48603					0.07994046822898326
SLLNRYNELM	10	Unmodified	_SLLNRYNELM_					0	0	0			REV__nc|ENSG00000088876|Q6P1L6-3|ZNF343	REV__nc|ENSG00000088876|Q6P1L6-3|ZNF343	MSMS	A375_MHC_IP_R2	2	418.1325378417969	3	418.216662	1251.62816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.665	1	35.428	34.928	35.928	0.76338								0	0	0	0.15372	1	12525	12525		5.0475	0	1		+		49746	16894	36175	36465	48604	48604					0.01240824828755649
SLLNSSLDLKI	11	Unmodified	_SLLNSSLDLKI_					0	0	0			REV__nc|ENSG00000139292|O75473-3|LGR5	REV__nc|ENSG00000139292|O75473-3|LGR5	MULTI-MSMS	A375_MHC_IP_R1	1	401.9711608886719	3	401.571211	1201.6918	-0.41251	-0.00016565	0.64721	0.0002599	0.2347	9.4248E-05	401.571443662055	64.985	0.91628	64.985	64.649	65.565	0					45	17	4	0	0	0	0.2494	1	23483	23483		50.648	12.089	1	21208000	+		49747	19147	36176	36466	48605	48605					0.09902508537516042
SLLNSSLDLKI	11	Unmodified	_SLLNSSLDLKI_					0	0	0			REV__nc|ENSG00000139292|O75473-3|LGR5	REV__nc|ENSG00000139292|O75473-3|LGR5	MULTI-MSMS	A375_MHC_IP_R2	2	401.97088623046875	3	401.571211	1201.6918	0.062055	2.4919E-05	-0.080541	-3.2343E-05	-0.018486	-7.4235E-06	401.5711626582828	64.119	0.81369	64.859	64.496	65.31	0.74023					47	15	5	0	0	0	0.097697	1	24264	24264		70.321	23.846	1	20526000	+		49748	19147	36176	36466	48606	48606					0.09902508537516042
SLLNSSLDLKI	11	Unmodified	_SLLNSSLDLKI_					0	0	0			REV__nc|ENSG00000139292|O75473-3|LGR5	REV__nc|ENSG00000139292|O75473-3|LGR5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	401.571211	1201.6918	-0.41251	-0.00016565	0.64721	0.0002599	0.2347	9.4248E-05	401.571443662055	64.985	0.91628	64.985	64.649	65.565	0	0.062881	0.00048172	NaN	70.321	45	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21208000	+		49749	19147	36176	36466							0.09902508537516042
SLLNSSLDLKI	11	Unmodified	_SLLNSSLDLKI_					0	0	0			REV__nc|ENSG00000139292|O75473-3|LGR5	REV__nc|ENSG00000139292|O75473-3|LGR5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	401.571211	1201.6918	0.062055	2.4919E-05	-0.080541	-3.2343E-05	-0.018486	-7.4235E-06	401.5711626582828	64.119	0.81369	64.859	64.496	65.31	0.74023	-0.062881	-0.00039501	NaN	70.321	47	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20526000	+		49750	19147	36176	36466							0.09902508537516042
SLLPEGPPAI	10	Unmodified	_SLLPEGPPAI_					0	0	0		ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1;nc|ENSG00000051108|Q15011-4|HERPUD1	ENSG00000051108|ENST00000439977|HERPUD1	ENSG00000051108|ENST00000439977|HERPUD1	MULTI-MSMS	A375_MHC_IP_R1	1	497.6842346191406	2	497.2844	992.554247	-0.15037	-7.4777E-05	-0.18292	-9.0964E-05	-0.33329	-0.00016574	497.28420658845835	111.82	0.661	111.82	111.52	112.18	0					28	12	3	0	0	0	0.011448	1	40982	40982		111.29	59.019	1	3828000			49751	1233	36177	36467	48607	48607					0.05767224728754172
SLLPEGPPAI	10	Unmodified	_SLLPEGPPAI_					0	0	0		ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1;nc|ENSG00000051108|Q15011-4|HERPUD1	ENSG00000051108|ENST00000439977|HERPUD1	ENSG00000051108|ENST00000439977|HERPUD1	MULTI-MSMS	A375_MHC_IP_R2	2	497.6845703125	2	497.2844	992.554247	-0.3194	-0.00015883	-0.15174	-7.546E-05	-0.47114	-0.00023429	497.2843454963154	111.04	0.76564	111.78	111.45	112.21	0.73692					27	14	3	0	0	0	0.0016777	1	41848	41848		141.83	77.59	1	4541600			49752	1233	36177	36467	48608	48608					0.05767224728754172
SLLPETPTV	9	Unmodified	_SLLPETPTV_					0	0	0		nc|ENSG00000164066|Q9ULD6-2|INTU;nc|ENSG00000164066|Q9ULD6-3|INTU;nc|ENSG00000164066|Q9ULD6-4|INTU;ENSG00000164066|ENST00000335251|INTU	nc|ENSG00000164066|Q9ULD6-2|INTU	nc|ENSG00000164066|Q9ULD6-2|INTU	MSMS	A375_MHC_IP_R1	1	479.1106262207031	2	478.768583	955.522613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.593	1	96.593	96.093	97.093	0								0	0	0	0.13673	1	35497	35497		30.637	5.2372	1				49753	6768	36178	36468	48609	48609					0.0430723197481484
SLLPHPIIV	9	Unmodified	_SLLPHPIIV_					0	0	0		nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8;nc|ENSG00000204634|O95759-2|TBC1D8	nc|ENSG00000204634|O95759|TBC1D8	nc|ENSG00000204634|O95759|TBC1D8	MULTI-SECPEP	A375_MHC_IP_R1	1	495.2128601074219	2	494.813128	987.611703	-0.3815	-0.00018877	-0.029398	-1.4546E-05	-0.4109	-0.00020332	494.8129427870653	99.452	0.60622	99.452	99.117	99.723	0					28	11	3	0	0	0	0.089948	1	36496	36496		70.716	14.174	1	5465700			49754	9472	36179	36469	48610	48610					0.11740111724998314
SLLPHPIIV	9	Unmodified	_SLLPHPIIV_					0	0	0		nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8;nc|ENSG00000204634|O95759-2|TBC1D8	nc|ENSG00000204634|O95759|TBC1D8	nc|ENSG00000204634|O95759|TBC1D8	MULTI-MSMS	A375_MHC_IP_R2	2	494.5649719238281	2	494.813128	987.611703	-0.46155	-0.00022838	0.11647	5.7632E-05	-0.34508	-0.00017075	494.8131181696186	98.364	0.55912	99.124	98.844	99.403	0.75977					23	10	3	0	0	0	0.042197	1	37273	37273		67.344	29.193	1	7379600			49755	9472	36179	36469	48611	48611					0.11740111724998314
SLLPIDETNPD	11	Unmodified	_SLLPIDETNPD_					0	0	0		nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000539659.5_1_12:14576849-14613468:+|nuORF;ENST00000541654.1_1_12:14538317-14613468:+|nuORF;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	nc|ENSG00000171681|Q6VMQ6-5|ATF7IP	nc|ENSG00000171681|Q6VMQ6-5|ATF7IP	MULTI-MSMS	A375_MHC_IP_R2	2	405.9746398925781	3	405.203076	1212.5874	-0.29125	-0.00011801	0.020408	8.2693E-06	-0.27084	-0.00010974	405.20305742167693	19.779	0.7083	20.389	19.993	20.701	0.6103					38	13	4	0	0	0	0.73332	1	5979	5979		2.6312	0.54727	1	15853000			49756	7628	36180	36470	48612	48612					-0.01039238009843757
SLLPLQRLRRR	11	Unmodified	_SLLPLQRLRRR_					0	0	0		ENSG00000164236|ENST00000296657|ANKRD33B	ENSG00000164236|ENST00000296657|ANKRD33B	ENSG00000164236|ENST00000296657|ANKRD33B	MSMS	A375_MHC_IP_R1	1	703.9912719726562	2	704.454594	1406.89463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.27	1	109.27	108.77	109.77	0								0	0	0	0.16334	1	40079	40079		1.3295	0	1				49757	6805	36181	36471	48613	48613					0.2074629617327446
SLLPLQRLRRR	11	Unmodified	_SLLPLQRLRRR_					0	0	0		ENSG00000164236|ENST00000296657|ANKRD33B	ENSG00000164236|ENST00000296657|ANKRD33B	ENSG00000164236|ENST00000296657|ANKRD33B	MULTI-SECPEP	A375_MHC_IP_R1	1	703.811767578125	2	704.454594	1406.89463	-0.35175	-0.00024779	-1.6398	-0.0011552	-1.9915	-0.001403	704.4540225435322	108.03	0.20304	108.03	107.85	108.05	0					5	3	2	0	0	0	1.0008	1	39585	39585		0.30703	0	1	938240			49758	6805	36181	36471	48614	48614					0.2074629617327446
SLLPLRVLL	9	Unmodified	_SLLPLRVLL_					0	0	0		ENST00000397901.7_1_16:89720316-89724043:-|nuORF	ENST00000397901.7_1_16:89720316-89724043:-|nuORF	ENST00000397901.7_1_16:89720316-89724043:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	512.75	2	512.349877	1022.6852	0.0023221	1.1897E-06	-0.094054	-4.8188E-05	-0.091732	-4.6999E-05	512.349769647108	126.94	0.30193	126.94	126.81	127.11	0					11	5	3	0	0	0	0.066859	1	48588	48588		57.722	2.9484	1	21591000			49759	11511	36182	36472	48615	48615					0.1747666016748326
SLLPLRVLL	9	Unmodified	_SLLPLRVLL_					0	0	0		ENST00000397901.7_1_16:89720316-89724043:-|nuORF	ENST00000397901.7_1_16:89720316-89724043:-|nuORF	ENST00000397901.7_1_16:89720316-89724043:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	512.7496948242188	2	512.349877	1022.6852	-0.72208	-0.00036996	-0.20227	-0.00010363	-0.92435	-0.00047359	512.3497369606612	126.56	0.3028	126.86	126.73	127.04	0.2951					10	5	3	0	0	0	0.13845	1	49561	49561		43.772	14.691	1	10921000			49760	11511	36182	36472	48616	48616					0.1747666016748326
SLLPPDALVGL	11	Unmodified	_SLLPPDALVGL_					0	0	0		SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant;ENSG00000101310|ENST00000650089|SEC23B	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	1095.712890625	1	1094.64559	1093.63831	-0.13108	-0.00014348	0.12161	0.00013312	-0.0094662	-1.0362E-05	1094.6454836866899	130.95	0.86063	130.95	130.67	131.53	0					42	16	3	0	0	0	0.063241	1	50452	50452		76.825	38.649	1	72606000			49761	2280	36183	36473	48617	48617					0.0952375582564855
SLLPPDALVGL	11	Unmodified	_SLLPPDALVGL_					0	0	0		SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant;ENSG00000101310|ENST00000650089|SEC23B	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	548.2255859375	2	547.826432	1093.63831	-0.76359	-0.00041832	-0.25364	-0.00013895	-1.0172	-0.00055726	547.8262247613796	130.89	1.2658	130.89	130.62	131.88	0					66	24	4	0	0	0	1.0393E-06	1	50415	50415		189.78	121.7	1	133480000			49762	2280	36183	36473	48618	48618					0.0952375582564855
SLLPPDALVGL	11	Unmodified	_SLLPPDALVGL_					0	0	0		SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant;ENSG00000101310|ENST00000650089|SEC23B	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	1095.2191162109375	1	1094.64559	1093.63831	0.094764	0.00010373	-0.82519	-0.00090329	-0.73043	-0.00079956	1094.6448684991908	130.72	0.91495	130.93	130.65	131.57	0.2142					45	17	4	0	0	0	2.7905E-05	1	51531	51531		142.08	84.358	1	95571000			49763	2280	36183	36473	48619	48619					0.0952375582564855
SLLPPDALVGL	11	Unmodified	_SLLPPDALVGL_					0	0	0		SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant;ENSG00000101310|ENST00000650089|SEC23B	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	548.2261962890625	2	547.826432	1093.63831	-0.78731	-0.00043131	-0.48206	-0.00026409	-1.2694	-0.00069539	547.8261023797332	130.73	1.2219	130.94	130.6	131.82	0.2142					63	23	4	0	0	0	1.0393E-06	1	51369	51369		189.78	114.85	1	88089000			49764	2280	36183	36473	48620	48620					0.0952375582564855
SLLPPTALVGL	11	Unmodified	_SLLPPTALVGL_					0	0	0		ENSG00000100934|ENST00000307712|SEC23A;ENST00000555682.1_1_14:39560581-39561747:-|nuORF	ENSG00000100934|ENST00000307712|SEC23A	ENSG00000100934|ENST00000307712|SEC23A	MULTI-SECPEP	A375_MHC_IP_R1	1	540.7290649414062	2	540.8368	1079.65905	-0.86047	-0.00046537	0.33681	0.00018216	-0.52366	-0.00028321	540.8368536691064	131.44	0.60443	131.44	131.13	131.73	0					18	11	2	0	0	0	0.85538	1	50712	50712		45.7	18.071	1	1351100			49765	2234	36184	36474	48621	48621					0.1224034620531711
SLLPTEQPRL	10	Unmodified	_SLLPTEQPRL_					0	0	0		ENST00000602622.5_1_16:67693438-67693558:-|nuORF;ENST00000602423.1_1_16:67693438-67694029:-|nuORF;ENST00000602860.5_1_16:67693438-67694150:-|nuORF;ENST00000602945.5_1_16:67692675-67693876:-|nuORF;nc|ENSG00000102977|Q96AP0-2|ACD;ENSG00000102977|ENST00000620761|ACD	ENST00000602622.5_1_16:67693438-67693558:-|nuORF	ENST00000602622.5_1_16:67693438-67693558:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	577.73193359375	2	577.332413	1152.65027	-0.13292	-7.6737E-05	0.070806	4.0879E-05	-0.06211	-3.5858E-05	577.3323624659998	73.005	0.70907	73.005	72.728	73.437	0					23	13	3	0	0	0	0.74574	1	26592	26592		45.74	10.808	1	5120600			49766	2406	36185	36475	48622	48622					0.08005372568845814
SLLPTEQPRL	10	Unmodified	_SLLPTEQPRL_					0	0	0		ENST00000602622.5_1_16:67693438-67693558:-|nuORF;ENST00000602423.1_1_16:67693438-67694029:-|nuORF;ENST00000602860.5_1_16:67693438-67694150:-|nuORF;ENST00000602945.5_1_16:67692675-67693876:-|nuORF;nc|ENSG00000102977|Q96AP0-2|ACD;ENSG00000102977|ENST00000620761|ACD	ENST00000602622.5_1_16:67693438-67693558:-|nuORF	ENST00000602622.5_1_16:67693438-67693558:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	577.7314453125	2	577.332413	1152.65027	-0.37855	-0.00021855	-0.34865	-0.00020128	-0.7272	-0.00041984	577.3321252177952	72.169	0.60668	72.903	72.618	73.225	0.73421					23	11	3	0	0	0	0.51635	1	27374	27374		37.075	5.0372	1	4866500			49767	2406	36185	36475	48623	48623					0.08005372568845814
SLLPTSPRL	9	Unmodified	_SLLPTSPRL_					0	0	0		nc|ENSG00000112983|Q9H0E9-3|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8	nc|ENSG00000112983|Q9H0E9-3|BRD8	nc|ENSG00000112983|Q9H0E9-3|BRD8	MULTI-MSMS	A375_MHC_IP_R1	1	492.6977844238281	2	492.297842	982.581131	-0.33245	-0.00016367	-0.091536	-4.5063E-05	-0.42399	-0.00020873	492.2977652910896	74.575	0.96347	74.575	74.197	75.16	0					48	18	4	0	0	0	0.0097266	1	27110	27110		111.29	43.206	1	39684000			49768	14553	36186	36476	48624	48624					0.08914333339930636
SLLPTSPRL	9	Unmodified	_SLLPTSPRL_					0	0	0		nc|ENSG00000112983|Q9H0E9-3|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8	nc|ENSG00000112983|Q9H0E9-3|BRD8	nc|ENSG00000112983|Q9H0E9-3|BRD8	MULTI-MSMS	A375_MHC_IP_R2	2	492.6975402832031	2	492.297842	982.581131	-0.47543	-0.00023405	-0.018305	-9.0117E-06	-0.49374	-0.00024307	492.29780785518665	73.616	1.1712	74.352	73.99	75.161	0.73541					52	22	4	0	0	0	0.010171	1	27893	27893		96.111	34.753	1	40803000			49769	14553	36186	36476	48625	48625					0.08914333339930636
SLLPWGLRY	9	Unmodified	_SLLPWGLRY_					0	0	0			REV__ENST00000409645.5_1_2:135211141-135211372:+|nuORF	REV__ENST00000409645.5_1_2:135211141-135211372:+|nuORF	MSMS	A375_MHC_IP_R2	2	552.7053833007812	2	552.813659	1103.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.6	1	104.36	103.86	104.86	0.76428								0	0	0	0.15486	1	39234	39234		7.9102	0	1		+		49770	24472	36187	36477	48626	48626					0.06510326093894037
SLLPYLPML	9	Unmodified	_SLLPYLPML_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.T2707Mfs*5|1|0.21|ENSG00000196367|chr7:98976664-98976688|CGCTGATGTTGGAGCACCAGGCTTT/-|frameshift_variant;TRRAP|p.I1891Sfs*37|1|0.32|ENSG00000196367|chr7:98953393-98953393|T/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	A375_MHC_IP_R1	1	524.2008666992188	2	523.801371	1045.58819	-0.78598	-0.0004117	0.29929	0.00015677	-0.48669	-0.00025493	523.8014064283907	136.23	0.20383	136.23	136.1	136.3	0					5	3	2	0	0	0	0.054184	1	52492	52492		81.864	41.415	1	2090400			49771	9031	36188	36478	48627	48627					0.06721929896139045
SLLQALIVAL	10	Unmodified	_SLLQALIVAL_					0	0	0			REV__ADAM2|p.S306L|1|0.31|ENSG00000104755|chr8:39777136-39777136|G/A|missense_variant	REV__ADAM2|p.S306L|1|0.31|ENSG00000104755|chr8:39777136-39777136|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	520.1644287109375	2	520.839342	1039.66413	-0.41604	-0.00021669	0.13303	6.9287E-05	-0.28301	-0.0001474	520.8394701676376	47.643	0.40284	47.643	47.416	47.819	0					12	7	2	0	0	0	0.93615	1	16799	16799		1.6526	0	1	1715100	+		49772	15314	36189	36479	48628	48628					0.14588650067935305
SLLQAVANLPY	11	Unmodified	_SLLQAVANLPY_					0	0	0		ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	MULTI-MSMS	A375_MHC_IP_R1	1	397.2801818847656	3	396.892284	1187.65502	0.0001656	6.5724E-08	-1.3157	-0.00052217	-1.3155	-0.00052211	396.8914221372022	23.036	0.85946	23.036	22.623	23.483	0					41	16	4	0	0	0	0.73016	1	6155	6155		8.7518	4.5623	1	16010000			49773	3030	36190	36480	48629	48629					0.06870256711613365
SLLQTLYKV	9	Unmodified	_SLLQTLYKV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	A375_MHC_IP_R1	1	533.535888671875	2	532.82115	1063.62775	-0.6699	-0.00035694	0.27777	0.000148	-0.39213	-0.00020893	532.8212239355079	95.915	1.0143	95.915	95.515	96.529	0					49	19	4	0	0	0	0.038567	1	35256	35256		83.429	33.496	1	17327000			49774	2175	36191	36481	48630	48630					0.09847773171213703
SLLQTLYKV	9	Unmodified	_SLLQTLYKV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	533.2208251953125	2	532.82115	1063.62775	-0.45848	-0.00024429	-0.23325	-0.00012428	-0.69173	-0.00036857	532.821007626419	94.813	1.1679	95.557	95.224	96.392	0.74474					45	22	4	0	0	0	0.064556	1	35995	35995		103.42	49.587	1	18200000			49775	2175	36191	36481	48631	48631					0.09847773171213703
SLLQTQHAL	9	Unmodified	_SLLQTQHAL_					0	0	0		nc|ENSG00000132254|P53365-2|ARFIP2;nc|ENSG00000132254|P53365-3|ARFIP2;ENSG00000132254|ENST00000396777|ARFIP2	nc|ENSG00000132254|P53365-2|ARFIP2	nc|ENSG00000132254|P53365-2|ARFIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	505.6456298828125	2	505.785099	1009.55564	-0.29151	-0.00014744	2.3472	0.0011872	2.0557	0.0010398	505.7848615236923	51.156	0.91145	51.156	50.713	51.625	0					27	17	3	0	0	0	0.35487	1	18135	18135		36.127	7.0454	1	3684200			49776	4383	36192	36482	48632	48632					0.05124858817509903
SLLQTQHAL	9	Unmodified	_SLLQTQHAL_					0	0	0		nc|ENSG00000132254|P53365-2|ARFIP2;nc|ENSG00000132254|P53365-3|ARFIP2;ENSG00000132254|ENST00000396777|ARFIP2	nc|ENSG00000132254|P53365-2|ARFIP2	nc|ENSG00000132254|P53365-2|ARFIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	506.1845397949219	2	505.785099	1009.55564	-0.91647	-0.00046354	-0.32947	-0.00016664	-1.2459	-0.00063018	505.7849337315434	50.176	0.45643	50.93	50.702	51.159	0.75406					13	8	2	0	0	0	0.38578	1	18887	18887		41.84	3.6641	1	2677400			49777	4383	36192	36482	48633	48633					0.05124858817509903
SLLQTTLFL	9	Unmodified	_SLLQTTLFL_					0	0	0		nc|ENSG00000205336|Q9Y653-4|ADGRG1;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;chr16:57640142-57641591|419|10.81|0.52|4.37|+|ENST00000564360|ADGRG1,ADGRG1;ENST00000564912.5_1_16:57684199-57687923:+|nuORF	nc|ENSG00000205336|Q9Y653-4|ADGRG1	nc|ENSG00000205336|Q9Y653-4|ADGRG1	MULTI-MSMS	A375_MHC_IP_R2	2	518.7078247070312	2	518.307875	1034.6012	-0.67858	-0.00035172	0.26321	0.00013642	-0.41538	-0.00021529	518.3079417801415	131.94	0.3524	132.13	131.95	132.3	0.18953					10	6	3	0	0	0	0.066859	1	51907	51907		57.722	2.9484	1	7542800			49778	9509	36193	36483	48634	48634					0.08528084279896575
SLLQTTLFL	9	Unmodified	_SLLQTTLFL_					0	0	0		nc|ENSG00000205336|Q9Y653-4|ADGRG1;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;chr16:57640142-57641591|419|10.81|0.52|4.37|+|ENST00000564360|ADGRG1,ADGRG1;ENST00000564912.5_1_16:57684199-57687923:+|nuORF	nc|ENSG00000205336|Q9Y653-4|ADGRG1	nc|ENSG00000205336|Q9Y653-4|ADGRG1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	518.307875	1034.6012	-0.76643	-0.00039725	0.067845	3.5165E-05	-0.69858	-0.00036208	518.3078611429219	132.16	0.25008	132.16	132.03	132.28	0	0.015791	-0.00010357	NaN	57.722	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6520900			49779	9509	36193	36483							0.08528084279896575
SLLRAMRVASY	11	Unmodified	_SLLRAMRVASY_					0	0	0			REV__nc|ENSG00000093010|P21964-2|COMT	REV__nc|ENSG00000093010|P21964-2|COMT	MULTI-SECPEP	A375_MHC_IP_R1	1	634.2491455078125	2	633.85299	1265.69143	-0.86165	-0.00054616	-3.5548	-0.0022532	-4.4164	-0.0027994	633.8509972226528	85.03	0.25465	85.03	84.955	85.21	0					5	4	2	0	0	0	0.99424	1	31196	31196		4.897	1.6157	1	1195400	+		49780	16981	36194	36484	48635	48635					0.0692081033669183
SLLRCFSK	8	Unmodified	_SLLRCFSK_					0	0	0			REV__ENST00000422625.5_1_3:190231879-190272481:+|nuORF	REV__ENST00000422625.5_1_3:190231879-190272481:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	477.665283203125	2	477.265487	952.516422	-0.61751	-0.00029472	0.87091	0.00041565	0.25339	0.00012094	477.26577607771947	107.08	0.65945	107.84	107.49	108.15	0.75436					26	12	3	0	0	0	0.70206	1	40453	40453		34.102	0	1	3323200	+		49781	24607	36195	36485	48636	48636					0.038264352623059494
SLLRCFSK	8	Unmodified	_SLLRCFSK_					0	0	0			REV__ENST00000422625.5_1_3:190231879-190272481:+|nuORF	REV__ENST00000422625.5_1_3:190231879-190272481:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	477.265487	952.516422	-0.247	-0.00011788	1.6282	0.00077707	1.3812	0.00065918	477.2661049520368	107.98	0.76154	107.98	107.65	108.41	0	0.071717	0.00043765	NaN	34.102	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3852900	+		49782	24607	36195	36485							0.038264352623059494
SLLRGRPG	8	Unmodified	_SLLRGRPG_					0	0	0		ENST00000566525.5_1_16:771546-771968:+|nuORF;ENST00000564640.5_1_16:771244-771968:+|nuORF;ENSG00000103254|ENST00000569529|ANTKMT	ENST00000566525.5_1_16:771546-771968:+|nuORF	ENST00000566525.5_1_16:771546-771968:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	428.66180419921875	2	428.261594	854.508634	0.13337	5.7117E-05	1.0003	0.00042839	1.1337	0.00048551	428.261928471874	127.65	1.6237	127.65	127.42	129.04	0					74	31	3	0	0	0	0.77717	1	49199	49199		5.2307	0	1	158820000			49783	2437	36196	36486	48637	48637					0.07556044057048439
SLLRHLEKV	9	Unmodified	_SLLRHLEKV_					0	0	0		nc|ENSG00000171992|Q8N3V7-3|SYNPO;ENSG00000171992|ENST00000307662|SYNPO;nc|ENSG00000171992|Q8N3V7|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	MULTI-MSMS	A375_MHC_IP_R1	1	365.9610290527344	3	365.560869	1093.66078	0.37898	0.00013854	0.051181	1.871E-05	0.43016	0.00015725	365.5608277793408	37.338	0.76613	37.338	37.096	37.862	0					30	14	4	0	0	0	0.017771	1	12558	12558		86.276	27.263	1	10639000			49784	7669	36197	36487	48638	48638					0.1176940001391813
SLLRHLEKV	9	Unmodified	_SLLRHLEKV_					0	0	0		nc|ENSG00000171992|Q8N3V7-3|SYNPO;ENSG00000171992|ENST00000307662|SYNPO;nc|ENSG00000171992|Q8N3V7|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	MULTI-MSMS	A375_MHC_IP_R2	2	365.9607849121094	3	365.560869	1093.66078	-0.077836	-2.8454E-05	0.10241	3.7437E-05	0.024575	8.9835E-06	365.56092794931095	36.056	0.66274	36.82	36.538	37.2	0.76384					31	12	3	0	0	0	0.12825	1	13105	13105		45.603	17.421	1	11319000			49785	7669	36197	36487	48639	48639					0.1176940001391813
SLLRHWHLRWL	11	Unmodified	_SLLRHWHLRWL_					0	0	0			REV__DDR1|p.R444H|1|0.12|ENSG00000204580|chr6:30893407-30893407|G/A|missense_variant	REV__DDR1|p.R444H|1|0.12|ENSG00000204580|chr6:30893407-30893407|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	506.1704406738281	3	506.293117	1515.85752	-0.68378	-0.00034619	2.6306	0.0013318	1.9468	0.00098565	506.2952731464317	48.418	0.8552	49.175	48.528	49.383	0.75737					21	16	2	0	0	0	1.0011	1	18123	18123		1.3296	0.92138	1	1605100	+		49786	15974	36198	36488	48640	48640					0.12022624627525147
SLLRKIIMF	9	Unmodified	_SLLRKIIMF_					0	0	0		tr|U7SRL8|U7SRL8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01573PE=4SV=1	tr|U7SRL8|U7SRL8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01573PE=4SV=1	tr|U7SRL8|U7SRL8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01573PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	561.36181640625	2	560.849187	1119.68382	-0.34206	-0.00019185	1.9145	0.0010738	1.5725	0.00088193	560.8523605802982	88.751	0.25359	88.751	88.561	88.815	0					8	4	3	0	0	0	0.75032	1	32578	32578		4.3292	2.0265	1	1022600			49787	29615	36199	36489	48641	48641					0.1287670280707971
SLLRKIYEI	9	Unmodified	_SLLRKIYEI_					0	0	0		ENSG00000196655|ENST00000533632|TRAPPC4;nc|ENSG00000196655|Q9Y296-2|TRAPPC4;ENST00000531290.5_1_11:118889791-118894106:+|nuORF	ENSG00000196655|ENST00000533632|TRAPPC4	ENSG00000196655|ENST00000533632|TRAPPC4	MULTI-MSMS	A375_MHC_IP_R2	2	379.30078125	3	378.900891	1133.68084	0.19946	7.5576E-05	-0.23642	-8.9581E-05	-0.036962	-1.4005E-05	378.9007760810359	68.909	0.50771	69.644	69.474	69.982	0.73512					17	9	3	0	0	0	0.14659	1	26141	26141		42.312	13.818	1	2032700			49788	9070	36200	36490	48642	48642					0.1193515095390012
SLLRKIYEI	9	Unmodified	_SLLRKIYEI_					0	0	0		ENSG00000196655|ENST00000533632|TRAPPC4;nc|ENSG00000196655|Q9Y296-2|TRAPPC4;ENST00000531290.5_1_11:118889791-118894106:+|nuORF	ENSG00000196655|ENST00000533632|TRAPPC4	ENSG00000196655|ENST00000533632|TRAPPC4	MULTI-MATCH	A375_MHC_IP_R1	1		3	378.900891	1133.68084	0.68146	0.00025821	-0.1819	-6.8923E-05	0.49956	0.00018928	378.900810686271	69.965	0.35297	69.965	69.732	70.085	0	0.16055	3.1817E-05	NaN	42.312	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1549200			49789	9070	36200	36490							0.1193515095390012
SLLRKPLSY	9	Unmodified	_SLLRKPLSY_					0	0	0		KCNQ5|p.G91R|1|0.46|ENSG00000185760|chr6:72622460-72622460|G/A|missense_variant	KCNQ5|p.G91R|1|0.46|ENSG00000185760|chr6:72622460-72622460|G/A|missense_variant	KCNQ5|p.G91R|1|0.46|ENSG00000185760|chr6:72622460-72622460|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	538.6984252929688	2	538.826766	1075.63898	-0.50186	-0.00027042	0.0019825	1.0682E-06	-0.49988	-0.00026935	538.8268029360712	45.79	0.25342	45.79	45.636	45.89	0					7	4	2	0	0	0	0.75466	1	16046	16046		7.9102	0	1	1401300			49790	14202	36201	36491	48643	48643					0.10418595265377917
SLLRKPLSY	9	Unmodified	_SLLRKPLSY_					0	0	0		KCNQ5|p.G91R|1|0.46|ENSG00000185760|chr6:72622460-72622460|G/A|missense_variant	KCNQ5|p.G91R|1|0.46|ENSG00000185760|chr6:72622460-72622460|G/A|missense_variant	KCNQ5|p.G91R|1|0.46|ENSG00000185760|chr6:72622460-72622460|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	539.12841796875	2	538.826766	1075.63898	-1.2494	-0.00067321	0.11852	6.3863E-05	-1.1309	-0.00060934	539.3283635758581	52.305	0.70847	53.057	52.729	53.437	0.75225					19	13	2	0	0	0	0.71541	1	19836	19836		11.64	11.182	1	2655600			49791	14202	36201	36491	48644	48644					0.10418595265377917
SLLRLKWRLHK	11	Unmodified	_SLLRLKWRLHK_					0	0	0			REV__ENST00000342992.10_3_2:179396097-179396157:-|nuORF	REV__ENST00000342992.10_3_2:179396097-179396157:-|nuORF	MSMS	A375_MHC_IP_R2	2	484.0698547363281	3	483.977017	1448.90922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.224	1	77.967	77.467	78.467	0.74293								0	0	0	0.16336	1	29325	29325		1.2148	0.70888	1		+		49792	23743	36202	36492	48645	48645					0.20272368321434442
SLLRLWPAL	9	Unmodified	_SLLRLWPAL_					0	0	0			REV__ENST00000432329.6_1_2:208394661-208394763:+|nuORF	REV__ENST00000432329.6_1_2:208394661-208394763:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	357.29022216796875	3	356.890327	1067.64915	-0.5097	-0.00018191	0.32748	0.00011688	-0.18222	-6.5033E-05	356.8903282169234	23.464	0.50541	24.094	23.828	24.333	0.63014					16	9	2	0	0	0	0.67152	1	7594	7594		9.544	0	1	3649800	+		49793	24715	36203	36493	48646	48646					0.11803202990586215
SLLRRKLAK	9	Unmodified	_SLLRRKLAK_					0	0	0		GPR179|p.K1829Pfs*6|1|0.44|ENSG00000277399|chr17:38328074-38328084|TCCAATCCCTT/-|frameshift_variant;nc|ENSG00000277399|Q6PRD1|GPR179;ENSG00000277399|ENST00000616987|GPR179	GPR179|p.K1829Pfs*6|1|0.44|ENSG00000277399|chr17:38328074-38328084|TCCAATCCCTT/-|frameshift_variant	GPR179|p.K1829Pfs*6|1|0.44|ENSG00000277399|chr17:38328074-38328084|TCCAATCCCTT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	362.96441650390625	3	362.248625	1083.72405	-0.064026	-2.3193E-05	-0.38659	-0.00014004	-0.45062	-0.00016323	362.24845701643534	24.017	0.55963	24.017	23.787	24.347	0					20	10	4	0	0	0	0.41856	1	6679	6679		23.801	2.2109	1	7733100			49794	10028	36204	36494	48647	48647					0.18553385521840937
SLLRRVRW	8	Unmodified	_SLLRRVRW_					0	0	0		ENSG00000179580|ENST00000569714|RNF151	ENSG00000179580|ENST00000569714|RNF151	ENSG00000179580|ENST00000569714|RNF151	MULTI-SECPEP	A375_MHC_IP_R2	2	542.6546630859375	2	543.338167	1084.66178	-0.61731	-0.00033541	-1.2435	-0.00067564	-1.8608	-0.001011	543.3374511927288	47.031	0.30634	47.792	47.664	47.97	0.76128					8	5	2	0	0	0	0.972	1	17695	17695		5.2307	0	1	1150200			49795	8240	36205	36495	48648	48648					0.12283659173499473
SLLRSGGG	8	Unmodified	_SLLRSGGG_					0	0	0		ENST00000407973.2_2_22:24951006-24951796:-|nuORF	ENST00000407973.2_2_22:24951006-24951796:-|nuORF	ENST00000407973.2_2_22:24951006-24951796:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	746.8721313476562	1	746.415528	745.408252	-0.30253	-0.00022581	2.5927	0.0019352	2.2901	0.0017094	746.4185920995781	107.07	0.35818	107.07	106.83	107.19	0					8	6	2	0	0	0	0.95423	1	39282	39282		4.3292	0	1	1380800			49796	11613	36206	36496	48649	48649					0.02536387003397067
SLLRSIFTV	9	Unmodified	_SLLRSIFTV_					0	0	0		ENSG00000108773|ENST00000225916|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	MULTI-MSMS	A375_MHC_IP_R2	2	518.71337890625	2	518.313492	1034.61243	-0.53529	-0.00027745	-0.056452	-2.926E-05	-0.59174	-0.00030671	518.3133937085025	111.04	0.56213	111.78	111.5	112.06	0.73692					24	10	3	0	0	0	0.030891	1	41859	41859		74.2	16.478	1	7627000			49797	2832	36207	36497	48650	48650					0.09650906374031365
SLLRVGWSV	9	Unmodified	_SLLRVGWSV_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-SECPEP	A375_MHC_IP_R1	1	508.6750793457031	2	508.798009	1015.58147	-0.39071	-0.00019879	0.50572	0.00025731	0.11501	5.8516E-05	508.7982411385392	93.729	0.75737	93.729	93.484	94.241	0					22	14	2	0	0	0	0.48845	1	34507	34507		37.075	7.9931	1	2963400			49798	9625	36208	36498	48651	48651					0.07429753059807354
SLLRVGWSV	9	Unmodified	_SLLRVGWSV_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-SECPEP	A375_MHC_IP_R2	2	509.1976013183594	2	508.798009	1015.58147	-0.66822	-0.00033999	0.68373	0.00034788	0.015512	7.8923E-06	508.79828742332006	92.831	0.71014	93.571	93.291	94.001	0.73902					22	13	2	0	0	0	0.26374	1	35285	35285		55.235	27.606	1	2549900			49799	9625	36208	36498	48652	48652					0.07429753059807354
SLLRVRVRRR	10	Unmodified	_SLLRVRVRRR_					0	0	0			REV__nc|ENSG00000115317|O43464-2|HTRA2	REV__nc|ENSG00000115317|O43464-2|HTRA2	MSMS	A375_MHC_IP_R2	2	656.0089721679688	2	655.933828	1309.8531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.504	1	96.254	95.754	96.754	0.75045								0	0	0	0.15591	1	36277	36277		1.6526	0.32309	1		+		49800	17874	36209	36499	48653	48653					0.21057160204645697
SLLRWEKQTF	10	Unmodified	_SLLRWEKQTF_					0	0	0			REV__nc|ENSG00000130684|Q9Y3M9-2|ZNF337	REV__nc|ENSG00000130684|Q9Y3M9-2|ZNF337	MSMS	A375_MHC_IP_R2	2	654.0609130859375	2	654.358962	1306.70337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.93	1	127.2	126.7	127.7	0.26593								0	0	0	0.1524	1	49706	49706		13.042	1.5478	1		+		49801	18553	36210	36500	48654	48654					0.06228750351488088
SLLSHRLKQV	10	Unmodified	_SLLSHRLKQV_					0	0	0			REV__ENSG00000187037|ENST00000334425|GPR141	REV__ENSG00000187037|ENST00000334425|GPR141	MULTI-SECPEP	A375_MHC_IP_R2	2	393.9488220214844	3	394.24354	1179.70879	-0.37681	-0.00014855	-0.093392	-3.6819E-05	-0.4702	-0.00018537	394.2435413691745	54.594	0.86332	55.345	54.865	55.729	0.75075					24	16	2	0	0	0	0.94707	1	20736	20736		1.5923	0	1	1801500	+		49802	22006	36211	36501	48655	48655					0.12612473933972979
SLLSHVEQL	9	Unmodified	_SLLSHVEQL_					0	0	0		ENSG00000116670|ENST00000376692|MAD2L2;ENST00000376664.10_1_1:11735929-11741152:-|nuORF	ENSG00000116670|ENST00000376692|MAD2L2	ENSG00000116670|ENST00000376692|MAD2L2	MULTI-MSMS	A375_MHC_IP_R1	1	513.6848754882812	2	513.284931	1024.55531	-0.36534	-0.00018753	-0.24838	-0.00012749	-0.61372	-0.00031502	513.2847559850035	78.226	1.2666	78.226	77.895	79.161	0					59	24	3	0	0	0	0.0098926	2	28518	28518;28682		118.07	35.539	1	30137000			49803	3414	36212	36502	48656;48657	48656					0.04401439097682669
SLLSHVEQL	9	Unmodified	_SLLSHVEQL_					0	0	0		ENSG00000116670|ENST00000376692|MAD2L2;ENST00000376664.10_1_1:11735929-11741152:-|nuORF	ENSG00000116670|ENST00000376692|MAD2L2	ENSG00000116670|ENST00000376692|MAD2L2	MULTI-MSMS	A375_MHC_IP_R2	2	513.6846313476562	2	513.284931	1024.55531	-0.76348	-0.00039188	-0.054004	-2.7719E-05	-0.81748	-0.0004196	513.2849215591829	77.269	1.0686	78.012	77.707	78.776	0.74293					53	20	3	0	0	0	0.0028938	1	29312	29312		157.8	34.345	1	29726000			49804	3414	36212	36502	48658	48658					0.04401439097682669
SLLSLGTL	8	Unmodified	_SLLSLGTL_					0	0	0		ENST00000450633.6_1_3:127291966-127292347:-|nuORF	ENST00000450633.6_1_3:127291966-127292347:-|nuORF	ENST00000450633.6_1_3:127291966-127292347:-|nuORF	MSMS	A375_MHC_IP_R2	2	402.5798645019531	2	402.247286	802.48002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.351	1	96.102	95.602	96.602	0.75045								0	0	0	0.16876	1	36223	36223		2.5775	0	1				49805	12067	36213	36503	48659	48659					0.07087881637255578
SLLSNLDEV	9	Unmodified	_SLLSNLDEV_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	A375_MHC_IP_R1	1	495.6614685058594	2	495.261122	988.507691	-0.17981	-8.9055E-05	-0.23429	-0.00011603	-0.4141	-0.00020509	495.2609784348716	109.76	0.61131	109.76	109.52	110.14	0					25	11	3	0	0	0	0.004328	1	40245	40245		136.33	0	1	2710800			49806	7485	36214	36504	48660	48660					0.012977401068042127
SLLSNLDEV	9	Unmodified	_SLLSNLDEV_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	A375_MHC_IP_R2	2	495.6610412597656	2	495.261122	988.507691	-0.41345	-0.00020476	-0.10209	-5.056E-05	-0.51554	-0.00025532	495.26108083630754	108.9	0.61247	109.65	109.37	109.98	0.74684					30	11	3	0	0	0	0.0099105	1	41096	41096		118.89	0	1	3241900			49807	7485	36214	36504	48661	48661					0.012977401068042127
SLLSNLEQYL	10	Unmodified	_SLLSNLEQYL_					0	0	0		ZNF646|p.Y1540Sfs*8|1|0.42|ENSG00000167395|chr16:31080943-31080943|A/-|frameshift_variant;nc|ENSG00000167395|O15015-1|ZNF646;ENSG00000167395|ENST00000300850|ZNF646	ZNF646|p.Y1540Sfs*8|1|0.42|ENSG00000167395|chr16:31080943-31080943|A/-|frameshift_variant	ZNF646|p.Y1540Sfs*8|1|0.42|ENSG00000167395|chr16:31080943-31080943|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	393.28118896484375	3	393.880044	1178.6183	-0.31164	-0.00012275	1.7538	0.0006908	1.4422	0.00056805	393.88047736246784	36.21	0.50939	36.98	36.799	37.308	0.7709					14	9	2	0	0	0	0.91932	1	13322	13322		11.518	0	1	1964200			49808	7183	36215	36505	48662	48662					0.03613960095049151
SLLSPTEML	9	Unmodified	_SLLSPTEML_					0	0	0		ENST00000494718.5_1_X:51640434-51640983:+|nuORF	ENST00000494718.5_1_X:51640434-51640983:+|nuORF	ENST00000494718.5_1_X:51640434-51640983:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	990.5023803710938	1	990.51761	989.510333	0.058878	5.832E-05	-0.44028	-0.0004361	-0.3814	-0.00037778	990.5177274088164	108.9	0.56229	109.65	109.27	109.83	0.74684					14	10	2	0	0	0	0.050162	1	41107	41107		64.236	6.765	1	3891300			49809	12693	36216	36506	48663	48663					0.015158722401224622
SLLSSGALAP	10	Unmodified	_SLLSSGALAP_					0	0	0		HELZ2|p.P884S|1|0.15|ENSG00000130589|chr20:63566172-63566172|G/A|missense_variant	HELZ2|p.P884S|1|0.15|ENSG00000130589|chr20:63566172-63566172|G/A|missense_variant	HELZ2|p.P884S|1|0.15|ENSG00000130589|chr20:63566172-63566172|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	458.6609191894531	2	458.260925	914.507297	0.23716	0.00010868	-0.34611	-0.00015861	-0.10894	-4.9924E-05	458.2607077715154	48.892	0.60633	48.892	48.629	49.235	0					19	11	2	0	0	0	0.079406	1	17273	17273		68.081	0	1	3465200			49810	14106	36217	36507	48664	48664					0.04662365177625816
SLLSSGALAP	10	Unmodified	_SLLSSGALAP_					0	0	0		HELZ2|p.P884S|1|0.15|ENSG00000130589|chr20:63566172-63566172|G/A|missense_variant	HELZ2|p.P884S|1|0.15|ENSG00000130589|chr20:63566172-63566172|G/A|missense_variant	HELZ2|p.P884S|1|0.15|ENSG00000130589|chr20:63566172-63566172|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	458.66070556640625	2	458.260925	914.507297	-0.24568	-0.00011258	-0.40917	-0.0001875	-0.65484	-0.00030009	458.26069722627295	48.096	0.8049	48.858	48.582	49.387	0.76128					22	15	2	0	0	0	0.12314	1	18060	18060		58.679	0	1	4526600			49811	14106	36217	36507	48665	48665					0.04662365177625816
SLLSSLEEQY	10	Unmodified	_SLLSSLEEQY_					0	0	0			REV__nc|ENSG00000115993|O60296-2|TRAK2	REV__nc|ENSG00000115993|O60296-2|TRAK2	MULTI-MSMS	A375_MHC_IP_R1	1	585.2047729492188	2	584.790244	1167.56593	-0.23629	-0.00013818	-2.4913	-0.0014569	-2.7276	-0.0015951	585.2894699199104	59.649	1.0675	59.649	59.092	60.159	0					37	20	3	0	0	0	0.62155	1	21331	21331		19.257	0	1	2099300	+		49812	17928	36218	36508	48666	48666					-0.011146230385520539
SLLSTPPLGG	10	Unmodified	_SLLSTPPLGG_					0	0	0			REV__ENST00000495220.5_1_9:140500199-140508117:+|nuORF	REV__ENST00000495220.5_1_9:140500199-140508117:+|nuORF	MSMS	A375_MHC_IP_R1	1	471.1947021484375	2	471.26875	940.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.411	1	86.411	85.911	86.911	0								0	0	0	0.13854	1	31685	31685		30.637	0.41173	1		+		49813	25446	36219	36509	48667	48667					0.0503065169467618
SLLSYLEQL	9	Unmodified	_SLLSYLEQL_					0	0	0			REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	MULTI-MSMS	A375_MHC_IP_R1	1	533.6942749023438	2	533.294965	1064.57538	-0.88463	-0.00047177	-0.90592	-0.00048312	-1.7905	-0.00095489	533.2946710672895	131.56	0.50612	131.56	131.43	131.93	0					22	9	4	0	0	0	0.0066517	1	50720	50720		165.72	0	1	22300000	+		49814	18620	36220	36510	48668	48668					0.04567190037596447
SLLSYLEQL	9	Unmodified	_SLLSYLEQL_					0	0	0			REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	MULTI-MSMS	A375_MHC_IP_R2	2	533.6944580078125	2	533.294965	1064.57538	-0.72418	-0.0003862	-0.94302	-0.00050291	-1.6672	-0.00088911	533.2948997630616	131.34	0.46008	131.53	131.34	131.8	0.18953					17	8	3	0	0	0	0.010852	1	51670	51670		179.17	0	1	14201000	+		49815	18620	36220	36510	48669	48669					0.04567190037596447
SLLSYLEQL	9	Unmodified	_SLLSYLEQL_					0	0	0			REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	533.294965	1064.57538	-0.88463	-0.00047177	-0.90592	-0.00048312	-1.7905	-0.00095489	533.2946710672895	131.56	0.50612	131.56	131.43	131.93	0	0.013843	7.4914E-06	NaN	165.72	22	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22300000	+		49816	18620	36220	36510							0.04567190037596447
SLLSYLEQL	9	Unmodified	_SLLSYLEQL_					0	0	0			REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	533.294965	1064.57538	-0.72418	-0.0003862	-0.94302	-0.00050291	-1.6672	-0.00088911	533.2948997630616	131.34	0.46008	131.53	131.34	131.8	0.18953	-0.013843	-3.2089E-05	NaN	165.72	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14201000	+		49817	18620	36220	36510							0.04567190037596447
SLLTQKWWEDM	11	Unmodified	_SLLTQKWWEDM_					0	0	0		TRPM4|p.G682E|1|0.35|ENSG00000130529|chr19:49190233-49190233|G/A|missense_variant	TRPM4|p.G682E|1|0.35|ENSG00000130529|chr19:49190233-49190233|G/A|missense_variant	TRPM4|p.G682E|1|0.35|ENSG00000130529|chr19:49190233-49190233|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	479.4637145996094	3	479.567472	1435.68059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.92	1	51.674	51.174	52.174	0.75406								0	0	0	0.16313	1	19155	19155		2.4348	0.35082	1				49818	30080	36221	36511	48670	48670					-0.019826368282792828
SLLTRLHKL	9	Unmodified	_SLLTRLHKL_					0	0	0			REV__nc|ENSG00000138002|Q9UG01-3|IFT172	REV__nc|ENSG00000138002|Q9UG01-3|IFT172	MSMS	A375_MHC_IP_R2	2	540.6548461914062	2	540.848033	1079.68151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.326	1	94.065	93.565	94.565	0.73902								0	0	0	0.15486	1	35480	35480		11.64	3.7301	1		+		49819	27253	36222	36512	48671	48671					0.1448599039358669
SLLVKALA	8	Unmodified	_SLLVKALA_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	A375_MHC_IP_R1	1	408.173583984375	2	407.773471	813.53239	-0.25737	-0.00010495	0.37547	0.00015311	0.1181	4.8159E-05	407.77356381986726	58.811	0.96655	58.811	58.481	59.448	0					44	18	4	0	0	0	0.64636	1	21095	21095		34.102	0	1	22650000	+		49820	20940	36223	36513	48672	48672					0.11816464770834045
SLLVKALA	8	Unmodified	_SLLVKALA_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	A375_MHC_IP_R2	2	408.17327880859375	2	407.773471	813.53239	-0.27106	-0.00011053	-0.0086994	-3.5474E-06	-0.27976	-0.00011408	407.77339232681226	57.795	0.80946	58.544	58.17	58.98	0.74894					40	15	4	0	0	0	0.64636	1	21801	21801		42.095	7.9921	1	20743000	+		49821	20940	36223	36513	48673	48673					0.11816464770834045
SLLVQVRL	8	Unmodified	_SLLVQVRL_					0	0	0		ENST00000588000.5_1_19:46124203-46142634:-|nuORF	ENST00000588000.5_1_19:46124203-46142634:-|nuORF	ENST00000588000.5_1_19:46124203-46142634:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	464.7032775878906	2	464.302927	926.591301	-0.51411	-0.0002387	0.26787	0.00012437	-0.24624	-0.00011433	464.30300490455807	89.569	0.61165	90.301	89.985	90.597	0.7318					26	11	3	0	0	0	0.84748	1	34056	34056		28.487	0	1	2783900			49822	13754	36224	36514	48674	48674					0.125069410651804
SLLVVKRKL	9	Unmodified	_SLLVVKRKL_					0	0	0		nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-MSMS	A375_MHC_IP_R1	1	352.58203125	3	352.581493	1054.72265	-0.34632	-0.00012211	0.27136	9.5676E-05	-0.074963	-2.643E-05	352.58150965466115	32.633	0.35132	32.633	32.383	32.734	0					20	6	4	0	0	0	0.74768	1	10471	10471		2.7352	1.5419	1	11344000			49823	14445	36225	36515	48675	48675					0.1974775143307852
SLLWCIWYYWW	11	Unmodified	_SLLWCIWYYWW_					0	0	0			REV__SGMS1|p.H308Y|1|0.16|ENSG00000198964|chr10:50308122-50308122|G/A|missense_variant	REV__SGMS1|p.H308Y|1|0.16|ENSG00000198964|chr10:50308122-50308122|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	540.5758666992188	3	540.256569	1617.74788	-0.78682	-0.00042509	-1.2279	-0.0006634	-2.0148	-0.0010885	540.5890681710135	80.466	0.15188	80.466	80.34	80.492	0					4	2	2	0	0	0	0.73807	1	29384	29384		1.2148	0.70888	1	1389700	+		49824	27954	36226	36516	48676	48676					-0.036285618266674646
SLLWLGCKNL	10	Unmodified	_SLLWLGCKNL_					0	0	0		ENST00000472828.1_1_2:179695251-179701862:-|nuORF	ENST00000472828.1_1_2:179695251-179701862:-|nuORF	ENST00000472828.1_1_2:179695251-179701862:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	383.28912353515625	3	382.882843	1145.6267	0.34638	0.00013262	-0.38465	-0.00014727	-0.03827	-1.4653E-05	383.2171896500467	50.93	0.3036	50.93	50.713	51.017	0					7	5	2	0	0	0	0.85226	1	18081	18081		3.3196	0	1	2073400			49825	12379	36227	36517	48677	48677					0.05971235530682861
SLLWSRQI	8	Unmodified	_SLLWSRQI_					0	0	0			REV__ENST00000297579.9_1_8:104432557-104433221:+|nuORF	REV__ENST00000297579.9_1_8:104432557-104433221:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.1900939941406	2	501.790184	1001.56581	-0.28585	-0.00014343	1.0549	0.00052934	0.76906	0.00038591	501.79029618006894	78.045	0.35712	78.045	77.844	78.201	0					11	6	2	0	0	0	0.81376	1	28515	28515		25.399	0	1	1257000	+		49826	23398	36228	36518	48678	48678					0.06509466542752307
SLLYFPPP	8	Unmodified	_SLLYFPPP_					0	0	0		ENST00000519181.5_1_8:103989824-103990052:+|nuORF	ENST00000519181.5_1_8:103989824-103990052:+|nuORF	ENST00000519181.5_1_8:103989824-103990052:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	467.62603759765625	2	467.257654	932.500755	-0.38695	-0.0001808	3.3841	0.0015813	2.9972	0.0014005	467.26066496685183	37.891	0.40787	37.891	37.556	37.964	0					10	7	2	0	0	0	0.88799	1	12737	12737		28.173	7.302	1	908570			49827	12976	36229	36519	48679	48679					0.031804720169020584
SLLYNVPAV	9	Unmodified	_SLLYNVPAV_					0	0	0		nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP	nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-MSMS	A375_MHC_IP_R1	1	488.6790466308594	2	488.279118	974.543683	-0.01226	-5.9865E-06	-0.0074277	-3.6268E-06	-0.019688	-9.6133E-06	488.2790276315161	108.57	0.70953	108.57	108.26	108.97	0					35	13	3	0	0	0	0.0098409	1	39773	39773		115.69	43.77	1	13695000			49828	14649;5293	36230	36520	48680	48680					0.05539242074326012
SLLYNVPAV	9	Unmodified	_SLLYNVPAV_					0	0	0		nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP	nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-SECPEP	A375_MHC_IP_R1	1	974.8955078125	1	975.550959	974.543683	0.40129	0.00039148	0.19076	0.0001861	0.59205	0.00057758	975.5509014667796	108.59	0.60933	108.59	108.21	108.81	0					26	11	3	0	0	0	0.1277	1	39878	39878		64.236	22.142	1	9380100			49829	14649;5293	36230	36520	48681	48681					0.05539242074326012
SLLYNVPAV	9	Unmodified	_SLLYNVPAV_					0	0	0		nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP	nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-MSMS	A375_MHC_IP_R2	2	488.6786193847656	2	488.279118	974.543683	-0.60422	-0.00029503	0.15906	7.7664E-05	-0.44517	-0.00021737	488.27911109768206	107.73	0.66464	108.48	108.2	108.86	0.75436					38	12	4	0	0	0	0.0098409	1	40643	40643		115.69	41.269	1	14699000			49830	14649;5293	36230	36520	48682	48682					0.05539242074326012
SLLYNVPAV	9	Unmodified	_SLLYNVPAV_					0	0	0		nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP	nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	975.550959	974.543683	-0.060327	-5.8852E-05	0.1305	0.0001273	0.070169	6.8453E-05	975.5510353169575	107.73	0.66464	108.48	108.2	108.86	0.75436	-0.055612	-3.5548E-05	NaN	64.236	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8015000			49831	14649;5293	36230	36520							0.05539242074326012
SLLYQKNVLWS	11	Unmodified	_SLLYQKNVLWS_					0	0	0			REV__ENST00000396467.5_1_8:74202877-74202940:-|nuORF	REV__ENST00000396467.5_1_8:74202877-74202940:-|nuORF	MSMS	A375_MHC_IP_R2	2	675.9678955078125	2	675.874445	1349.73434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.6	1	125.89	125.39	126.39	0.2951								0	0	0	0.13869	1	49031	49031		27.629	1.3607	1		+		49832	24339	36231	36521	48683	48683					0.07345903665759579
SLMEEWFPGLL	11	Unmodified	_SLMEEWFPGLL_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.E2519Dfs*5|1|0.21|ENSG00000188906|chr12:40367737-40367738|-/CTTAG|frameshift_variant;ENST00000479187.5_1_12:40692272-40758932:+|nuORF	ENSG00000188906|ENST00000298910|LRRK2	ENSG00000188906|ENST00000298910|LRRK2	MULTI-MSMS	A375_MHC_IP_R2	2	661.7283935546875	2	661.328482	1320.64241	-0.87457	-0.00057838	-1.515	-0.0010019	-2.3896	-0.0015803	661.8286542585604	130.8	1.0184	131.01	130.7	131.72	0.2142					64	19	4	0	0	0	0.72649	2	51464	51464;51511		12.241	4.6317	1	14834000			49833	8945	36232	36522	48684;48685	48684					-0.0050852274293902155
SLMEEWFPGLL	11	Unmodified	_SLMEEWFPGLL_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.E2519Dfs*5|1|0.21|ENSG00000188906|chr12:40367737-40367738|-/CTTAG|frameshift_variant;ENST00000479187.5_1_12:40692272-40758932:+|nuORF	ENSG00000188906|ENST00000298910|LRRK2	ENSG00000188906|ENST00000298910|LRRK2	MULTI-MATCH	A375_MHC_IP_R1	1		2	661.328482	1320.64241	-0.74444	-0.00049232	-1.32	-0.00087298	-2.0645	-0.0013653	661.8286781929104	130.93	1.1151	130.93	130.51	131.63	0	-0.039884	0.0001788	NaN	12.241	30	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13008000			49834	8945	36232	36522							-0.0050852274293902155
SLMEILYTL	9	Unmodified	_SLMEILYTL_					0	0	0		ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	MULTI-SECPEP	A375_MHC_IP_R1	1	542.1930541992188	2	541.793743	1081.57293	-0.90655	-0.00049116	-0.020193	-1.0941E-05	-0.92675	-0.0005021	541.7936020883121	136.11	0.25464	136.11	135.95	136.2	0					6	4	2	0	0	0	0.71541	1	52471	52471		11.64	3.047	1	1081800			49835	7301	36233	36523	48686	48686					0.03541018308328603
SLMELCSLL	9	Carbamidomethyl (C),Oxidation (M)	_SLM(Oxidation (M))ELC(Carbamidomethyl (C))SLL_	SLMELC(1)SLL	SLM(1)ELCSLL	SLMELC(42)SLL	SLM(42)ELCSLL	0	1	1		ENST00000462306.5_1_2:128047812-128051699:-|nuORF;ENST00000490062.1_1_2:128050061-128051699:-|nuORF	ENST00000462306.5_1_2:128047812-128051699:-|nuORF	ENST00000462306.5_1_2:128047812-128051699:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	541.1819458007812	2	541.267035	1080.51952	-0.37615	-0.0002036	3.0391	0.001645	2.663	0.0014414	541.2678367922558	69.055	0.45524	69.055	68.769	69.224	0					12	8	3	0	0	0	0.1478	1	25031	25031		42.095	9.7891	1	592150			49836	12200	36234	36524	48687	48687	57	457			-0.017521024658435636
SLMEYDNMSD	10	Unmodified	_SLMEYDNMSD_					0	0	0			REV__tr|U7SMN1|U7SMN1_FUSNUCof-likehydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01756PE=4SV=1	REV__tr|U7SMN1|U7SMN1_FUSNUCof-likehydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01756PE=4SV=1	MSMS	A375_MHC_IP_R1	1	602.852783203125	2	602.728471	1203.44239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.317	1	86.317	85.817	86.817	0								0	0	0	0.15435	1	31648	31648		6.7232	1.9672	1		+		49837	28306	36235	36525	48688	48688					-0.151193654728786
SLMGTVFLL	9	Unmodified	_SLMGTVFLL_					0	0	0		nc|ENSG00000156671|Q96LT4-2|SAMD8;ENSG00000156671|ENST00000542569|SAMD8	nc|ENSG00000156671|Q96LT4-2|SAMD8	nc|ENSG00000156671|Q96LT4-2|SAMD8	MULTI-MSMS	A375_MHC_IP_R1	1	980.4757080078125	1	980.548516	979.54124	-0.11214	-0.00010995	-0.44681	-0.00043812	-0.55895	-0.00054808	980.5480756406777	134.3	0.15092	134.3	134.22	134.37	0					4	2	2	0	0	0	0.17328	1	51804	51804		39.957	0	1	1870900			49838	6203	36236	36526	48689	48689					0.05065070345028744
SLMHTSIPPPV	11	Unmodified	_SLMHTSIPPPV_					0	0	0		ENST00000560340.5_1_15:86126292-86126382:+|nuORF	ENST00000560340.5_1_15:86126292-86126382:+|nuORF	ENST00000560340.5_1_15:86126292-86126382:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	590.2669677734375	2	589.815541	1177.61653	-0.41965	-0.00024752	1.1106	0.00065506	0.69096	0.00040754	590.3180687220053	86.396	0.81738	87.129	86.845	87.662	0.73301					21	15	2	0	0	0	0.72949	1	33048	33048		9.3831	0.78985	1	2745000			49839	13491	36237	36527	48690	48690					0.03482627805442462
SLMITCVTI	9	Carbamidomethyl (C),Oxidation (M)	_SLM(Oxidation (M))ITC(Carbamidomethyl (C))VTI_	SLMITC(1)VTI	SLM(1)ITCVTI	SLMITC(57)VTI	SLM(57)ITCVTI	0	1	1		ENSG00000128519|ENST00000249284|TAS2R16	ENSG00000128519|ENST00000249284|TAS2R16	ENSG00000128519|ENST00000249284|TAS2R16	MULTI-SECPEP	A375_MHC_IP_R1	1	527.6690063476562	2	527.269578	1052.5246	-0.49898	-0.0002631	-0.10012	-5.2788E-05	-0.59909	-0.00031588	527.2694896727755	77.543	0.45575	77.543	77.235	77.69	0					14	8	2	0	0	0	0.10969	1	28281	28281		57.471	21.427	1	2808300			49840	4141	36238	36528	48691	48691	26	214			0.0004420139678131818
SLMITCVTI	9	Carbamidomethyl (C),Oxidation (M)	_SLM(Oxidation (M))ITC(Carbamidomethyl (C))VTI_	SLMITC(1)VTI	SLM(1)ITCVTI	SLMITC(51)VTI	SLM(51)ITCVTI	0	1	1		ENSG00000128519|ENST00000249284|TAS2R16	ENSG00000128519|ENST00000249284|TAS2R16	ENSG00000128519|ENST00000249284|TAS2R16	MULTI-SECPEP	A375_MHC_IP_R1	1	527.6694946289062	2	527.269578	1052.5246	-0.49112	-0.00025895	-0.039487	-2.082E-05	-0.53061	-0.00027977	527.2697243298581	60.083	0.86541	60.083	59.548	60.414	0					37	16	3	0	0	0	0.14105	1	21608	21608		50.855	14.811	1	12510000			49841	4141	36238	36528	48692	48692	26	214			0.0004420139678131818
SLMITCVTI	9	Carbamidomethyl (C),Oxidation (M)	_SLM(Oxidation (M))ITC(Carbamidomethyl (C))VTI_	SLMITC(1)VTI	SLM(1)ITCVTI	SLMITC(57)VTI	SLM(57)ITCVTI	0	1	1		ENSG00000128519|ENST00000249284|TAS2R16	ENSG00000128519|ENST00000249284|TAS2R16	ENSG00000128519|ENST00000249284|TAS2R16	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6689453125	2	527.269578	1052.5246	-0.47174	-0.00024874	0.22552	0.00011891	-0.24622	-0.00012982	527.2695934491925	76.746	0.45774	77.486	77.146	77.604	0.74052					14	8	2	0	0	0	0.10969	1	29125	29125		57.471	6.6163	1	2507900			49842	4141	36238	36528	48693	48693	26	214			0.0004420139678131818
SLMKFKCVAIL	11	Unmodified	_SLMKFKCVAIL_					0	0	0			REV__nc|ENSG00000164325|Q8WUU8-2|TMEM174	REV__nc|ENSG00000164325|Q8WUU8-2|TMEM174	MULTI-MSMS	A375_MHC_IP_R2	2	418.64306640625	3	418.243384	1251.70832	-0.017008	-7.1136E-06	-0.68837	-0.00028791	-0.70538	-0.00029502	418.243146366889	64.442	2.1852	65.182	64.446	66.631	0.74022					63	42	3	0	0	0	0.72851	1	24400	24400		10.315	1.0715	1	3136900	+		49843	20483	36239	36529	48694	48694					0.0925359489829134
SLMKTRTGELS	11	Unmodified	_SLMKTRTGELS_					0	0	0		ENST00000372398.5_1_9:132980151-132982049:+|nuORF	ENST00000372398.5_1_9:132980151-132982049:+|nuORF	ENST00000372398.5_1_9:132980151-132982049:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	611.4185791015625	2	611.826637	1221.63872	-0.81809	-0.00050053	-2.9675	-0.0018156	-3.7856	-0.0023161	611.8248378269607	60.932	0.35475	61.677	61.414	61.769	0.74504					10	6	2	0	0	0	0.94168	1	23060	23060		15.248	2.206	1	1212000			49844	11197	36240	36530	48695	48695					0.03676807483225275
SLMKVLIQK	9	Unmodified	_SLMKVLIQK_					0	0	0			REV__PIBF1|p.H696L|1|0.36|ENSG00000083535|chr13:72998859-72998859|A/T|missense_variant	REV__PIBF1|p.H696L|1|0.36|ENSG00000083535|chr13:72998859-72998859|A/T|missense_variant	MSMS	A375_MHC_IP_R2	2	353.9567565917969	3	353.891339	1058.65219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.086	1	45.855	45.355	46.355	0.7691								0	0	0	0.15486	1	16847	16847		6.6304	0.42459	1		+		49845	27777	36241	36531	48696	48696					0.12520710053104267
SLMLKHWRLDF	11	Unmodified	_SLMLKHWRLDF_					0	0	0			REV__nc|ENSG00000084636|Q07092-2|COL16A1	REV__nc|ENSG00000084636|Q07092-2|COL16A1	MSMS	A375_MHC_IP_R2	2	723.4666137695312	2	723.389739	1444.76493	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.15	1	55.9	55.4	56.4	0.75075								0	0	0	0.16302	1	20829	20829		2.9952	0.26005	1		+		49846	16824	36242	36532	48697	48697					0.06033358779131959
SLMLVTVELKE	11	Unmodified	_SLMLVTVELKE_					0	0	0		ENSG00000132842|ENST00000255194|AP3B1;nc|ENSG00000132842|O00203-3|AP3B1;ENST00000522901.1_1_5:77298728-77311267:-|nuORF	ENSG00000132842|ENST00000255194|AP3B1	ENSG00000132842|ENST00000255194|AP3B1	MSMS	A375_MHC_IP_R2	2	631.4178466796875	2	631.357239	1260.69993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.19	1	101.96	101.46	102.46	0.76428								0	0	0	0.16273	1	38359	38359		4.5289	0.93237	1				49847	4457	36243	36533	48698	48698					0.08000319462644256
SLMLYFRIRFY	11	Unmodified	_SLMLYFRIRFY_					0	0	0		ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	MSMS	A375_MHC_IP_R2	2	503.54083251953125	3	503.607602	1507.80098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.418	1	89.15	88.65	89.65	0.7318								0	0	0	0.16269	1	33648	33648		4.7159	3.5011	1				49848	2599	36244	36534	48699	48699					0.06738815956009603
SLMMLEITISL	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SLMMLEITISL_					1	0	0		TAS2R39|p.S98L|1|0.3|ENSG00000236398|chr7:143183711-143183711|C/T|missense_variant	TAS2R39|p.S98L|1|0.3|ENSG00000236398|chr7:143183711-143183711|C/T|missense_variant	TAS2R39|p.S98L|1|0.3|ENSG00000236398|chr7:143183711-143183711|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	647.2449951171875	2	646.84565	1291.67675	-0.43955	-0.00028432	0.027362	1.7699E-05	-0.41218	-0.00026662	646.8456154637466	83.71	1.0152	83.71	82.974	83.989	0					25	19	2	0	0	0	0.18122	1	30632	30632		56.177	8.5827	1	3389800			49849	29298	36245	36535	48700	48700					0.04257557353662378
SLMMLEITISL	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SLMMLEITISL_					1	0	0		TAS2R39|p.S98L|1|0.3|ENSG00000236398|chr7:143183711-143183711|C/T|missense_variant	TAS2R39|p.S98L|1|0.3|ENSG00000236398|chr7:143183711-143183711|C/T|missense_variant	TAS2R39|p.S98L|1|0.3|ENSG00000236398|chr7:143183711-143183711|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	646.84565	1291.67675	-0.66189	-0.00042814	0.61893	0.00040035	-0.042964	-2.7791E-05	646.8459640277507	83.01	0.60466	83.75	83.393	83.998	0.73962	0.019619	0.0002747	NaN	56.177	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4136100			49850	29298	36245	36535							0.04257557353662378
SLMNIQHFL	9	Unmodified	_SLMNIQHFL_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MULTI-SECPEP	A375_MHC_IP_R2	2	552.18896484375	2	551.789327	1101.5641	-0.72866	-0.00040207	0.56786	0.00031334	-0.1608	-8.8729E-05	551.7894690458597	104.21	0.66249	104.98	104.65	105.31	0.76308					21	12	2	0	0	0	0.23313	1	39462	39462		62.573	33.491	1	2044800			49851	3006	36246	36536	48701	48701					0.017380894624920984
SLMNMQLSLPD	11	Unmodified	_SLMNMQLSLPD_					0	0	0			REV__PRICKLE2|p.D377N|1|0.41|ENSG00000163637|chr3:64147361-64147361|C/T|missense_variant	REV__PRICKLE2|p.D377N|1|0.41|ENSG00000163637|chr3:64147361-64147361|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	416.6326599121094	3	416.870275	1247.58899	-0.36463	-0.000152	-0.069001	-2.8765E-05	-0.43363	-0.00018077	417.2046144143709	20.474	0.66086	21.084	20.701	21.362	0.61029					18	12	2	0	0	0	0.99883	1	6264	6264		2.6312	0.72486	1	925580	+		49852	27836	36247	36537	48702	48702					-0.02489643517105833
SLMNYFNL	8	Unmodified	_SLMNYFNL_					0	0	0			REV__CRB1|p.P634L|1|0.42|ENSG00000134376|chr1:197421729-197421729|C/T|missense_variant	REV__CRB1|p.P634L|1|0.42|ENSG00000134376|chr1:197421729-197421729|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	501.1775817871094	2	501.241678	1000.4688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.095	1	86.828	86.328	87.328	0.733								0	0	0	0.16876	1	32740	32740		21.747	2.4897	1		+		49853	15914	36248	36538	48703	48703					-0.031412637285598066
SLMRKEDEL	9	Unmodified	_SLMRKEDEL_					0	0	0			REV__nc|ENSG00000103544|Q7Z3J2-2|VPS35L	REV__nc|ENSG00000103544|Q7Z3J2-2|VPS35L	MULTI-SECPEP	A375_MHC_IP_R1	1	561.1864624023438	2	560.786981	1119.55941	-0.49674	-0.00027857	-0.72288	-0.00040538	-1.2196	-0.00068395	560.7865892245121	55.071	0.66037	55.071	54.72	55.381	0					20	12	2	0	0	0	0.60917	1	19652	19652		19.257	0	1	2897300	+		49854	17285	36249	36539	48704	48704					0.004411605290670195
SLMSHAIEL	9	Oxidation (M)	_SLM(Oxidation (M))SHAIEL_		SLM(1)SHAIEL		SLM(100)SHAIEL	0	0	1		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	A375_MHC_IP_R1	1	509.1575012207031	2	508.757692	1015.50083	-0.34566	-0.00017586	0.24765	0.00012599	-0.098011	-4.9864E-05	508.7577825657049	54.593	0.56021	54.593	54.364	54.924	0					18	10	2	0	0	0	0.0090669	1	19523	19523		100.37	52.623	1	5374700			49855	4853	36250	36540	48705	48705		257			-0.00629896045404621
SLMSHAIEL	9	Oxidation (M)	_SLM(Oxidation (M))SHAIEL_		SLM(1)SHAIEL		SLM(50)SHAIEL	0	0	1		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	A375_MHC_IP_R2	2	509.6712341308594	2	508.757692	1015.50083	-1.2199	-0.00062062	0.54041	0.00027494	-0.67947	-0.00034568	508.75785504984736	53.658	0.8707	54.409	53.842	54.712	0.75105					27	16	3	0	0	0	0.10411	1	20068	20068		49.933	27.197	1	5417700			49856	4853	36250	36540	48706	48706		257			-0.00629896045404621
SLMSHAIEL	9	Oxidation (M)	_SLM(Oxidation (M))SHAIEL_		SLM(1)SHAIEL		SLM(56)SHAIEL	0	0	1		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	A375_MHC_IP_R2	2	509.15716552734375	2	508.757692	1015.50083	-1.3336	-0.00067846	0.40086	0.00020394	-0.9327	-0.00047452	508.757826575533	53.183	0.50929	53.934	53.638	54.147	0.75105					15	9	2	0	0	0	0.070818	1	20079	20079		56.177	25.541	1	4889700			49857	4853	36250	36540	48707	48707		257			-0.00629896045404621
SLMSHAIEL	9	Unmodified	_SLMSHAIEL_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-SECPEP	A375_MHC_IP_R1	1	501.1598815917969	2	500.760235	999.505917	-0.31412	-0.0001573	-0.30301	-0.00015173	-0.61713	-0.00030903	500.76004238999826	77.869	0.56297	77.869	77.588	78.15	0					32	10	4	0	0	0	0.05755	1	28400	28400		81.613	37.206	1	10508000			49858	4853	36250	36541	48708	48708					0.0061440781720421
SLMSHAIEL	9	Unmodified	_SLMSHAIEL_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-SECPEP	A375_MHC_IP_R2	2	500.9735107421875	2	500.760235	999.505917	-0.58621	-0.00029355	-0.60194	-0.00030143	-1.1881	-0.00059498	500.7602013617067	76.899	0.60437	77.642	77.354	77.958	0.74294					31	11	4	0	0	0	0.05755	1	29151	29151		81.613	28.038	1	8190500			49859	4853	36250	36541	48709	48709					0.0061440781720421
SLMSVDFLY	9	Unmodified	_SLMSVDFLY_					0	0	0			REV__ENSG00000156466|ENST00000287020|GDF6	REV__ENSG00000156466|ENST00000287020|GDF6	MULTI-SECPEP	A375_MHC_IP_R2	2	537.6167602539062	2	537.762443	1073.51033	-0.98692	-0.00053073	-1.381	-0.00074267	-2.368	-0.0012734	537.7615035417963	51.021	0.40518	51.775	51.665	52.07	0.75406					13	7	2	0	0	0	0.3243	1	19219	19219		36.044	0	1	1582900	+		49860	19982	36251	36542	48710	48710					-0.02348127759887575
SLMVKRLRN	9	Unmodified	_SLMVKRLRN_					0	0	0		ENST00000437629.6_2_10:88856696-88911209:+|nuORF	ENST00000437629.6_2_10:88856696-88911209:+|nuORF	ENST00000437629.6_2_10:88856696-88911209:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	373.2937927246094	3	372.893854	1115.65973	0.11298	4.213E-05	-0.64191	-0.00023936	-0.52893	-0.00019723	372.8936420937509	26.674	0.56247	27.334	27.109	27.671	0.65992					26	10	3	0	0	0	0.57304	1	9027	9027		29.841	4.8496	1	9646000			49861	11941	36252	36543	48711	48711					0.1065286237339933
SLMWPSCLY	9	Unmodified	_SLMWPSCLY_					0	0	0			REV__ENST00000569658.1_1_16:69833295-69833346:+|nuORF	REV__ENST00000569658.1_1_16:69833295-69833346:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	549.724365234375	2	550.251188	1098.48782	-0.54503	-0.0002999	1.2242	0.00067364	0.67922	0.00037374	550.7539311015689	63.971	0.40508	63.971	63.786	64.191	0					13	7	2	0	0	0	0.71541	1	23112	23112		11.64	5.4345	1	894900	+		49862	26272	36253	36544	48712	48712					-0.057480504291334
SLNALLGV	8	Unmodified	_SLNALLGV_					0	0	0			REV__nc|ENSG00000008710|P98161-2|PKD1	REV__nc|ENSG00000008710|P98161-2|PKD1	MSMS	A375_MHC_IP_R2	2	394.13970947265625	2	393.739628	785.464704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.399	1	100.16	99.659	100.66	0.75977								0	0	0	0.16876	1	37705	37705		38.151	0	1		+		49863	16177	36254	36545	48713	48713					0.0633901484004582
SLNCDWGEPV	10	Unmodified	_SLNCDWGEPV_					0	0	0		nc|ENSG00000188501|Q6UWM7-2|LCTL;ENSG00000188501|ENST00000695545|LCTL	nc|ENSG00000188501|Q6UWM7-2|LCTL	nc|ENSG00000188501|Q6UWM7-2|LCTL	MULTI-SECPEP	A375_MHC_IP_R1	1	560.01611328125	2	560.242406	1118.47026	-0.63982	-0.00035845	-0.085918	-4.8135E-05	-0.72573	-0.00040659	560.7448163641011	86.771	0.35411	86.771	86.527	86.881	0					8	6	2	0	0	0	0.90853	1	31756	31756		15.847	0	1	1426700			49864	8909	36255	36546	48714	48714					-0.08423674430446226
SLNCFARW	8	Unmodified	_SLNCFARW_					0	0	0			REV__LPO|p.D574N|1|0.24|ENSG00000167419|chr17:58267375-58267375|G/A|missense_variant	REV__LPO|p.D574N|1|0.24|ENSG00000167419|chr17:58267375-58267375|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	498.6376953125	2	498.739637	995.464721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.309	1	78.309	77.809	78.809	0								0	0	0	0.16876	1	28579	28579		11.64	0	1		+		49865	26939	36256	36547	48715	48715					-0.03319308431616719
SLNCGEND	8	Unmodified	_SLNCGEND_					0	0	0			REV__nc|ENSG00000133794|O00327-6|BMAL1	REV__nc|ENSG00000133794|O00327-6|BMAL1	MULTI-MSMS	A375_MHC_IP_R1	1	852.3489990234375	1	851.319973	850.312696	-0.29335	-0.00024974	-1.6486	-0.0014035	-1.942	-0.0016532	851.316963401083	125.58	0.25205	125.58	125.5	125.75	0					5	4	2	0	0	0	0.77624	1	47820	47820		8.5933	1.304	1	9427400	+		49866	18734	36257	36548	48716	48716					-0.1184475396983089
SLNCLCFEIK	10	Unmodified	_SLNCLCFEIK_					0	0	0		ENST00000575627.5_1_16:30064802-30075163:+|nuORF;ENST00000562240.1_1_16:30064796-30075160:+|nuORF;ENST00000566897.5_1_16:30064796-30075160:+|nuORF	ENST00000575627.5_1_16:30064802-30075163:+|nuORF	ENST00000575627.5_1_16:30064802-30075163:+|nuORF	MSMS	A375_MHC_IP_R1	1	585.15380859375	2	585.288302	1168.56205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.599	1	97.599	97.099	98.099	0								0	0	0	0.1524	1	35857	35857		13.042	2.2185	1				49867	13515	36258	36549	48717	48717					-0.015487073376561966
SLNDDYSF	8	Unmodified	_SLNDDYSF_					0	0	0		tr|U7SFW0|U7SFW0_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02253PE=4SV=1	tr|U7SFW0|U7SFW0_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02253PE=4SV=1	tr|U7SFW0|U7SFW0_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02253PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	481.6585388183594	2	480.700897	959.387241	-0.37021	-0.00017796	1.0863	0.00052216	0.71604	0.0003442	480.7020746303805	57.399	0.96519	57.399	57.059	58.024	0					43	18	3	0	0	0	0.77515	1	20751	20751		12.532	3.1841	1	10859000			49868	29396	36259	36550	48718	48718					-0.09407667886796389
SLNDEVPEV	9	Unmodified	_SLNDEVPEV_					0	0	0		nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5;ENST00000438961.1_1_7:766900-790557:+|nuORF	nc|ENSG00000164818|Q86Y56-2|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	MULTI-SECPEP	A375_MHC_IP_R2	2	501.6422424316406	2	501.242929	1000.47131	-0.89717	-0.0004497	-0.076556	-3.8373E-05	-0.97372	-0.00048807	501.2427978451014	71.572	0.70914	72.307	72.01	72.72	0.73421					20	13	2	0	0	0	0.13244	1	27196	27196		59.368	13.669	1	2134200			49869	6883	36260	36551	48719	48719					-0.028911367898899698
SLNECFVKV	9	Carbamidomethyl (C)	_SLNEC(Carbamidomethyl (C))FVKV_	SLNEC(1)FVKV		SLNEC(76)FVKV		0	1	0		ENSG00000054598|ENST00000645831|FOXC1;ENSG00000179772|ENST00000375978|FOXS1;ENSG00000176692|ENST00000649859|FOXC2	ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6785888671875	2	548.278792	1094.54303	-0.9105	-0.00049921	-0.068355	-3.7478E-05	-0.97886	-0.00053669	548.2784530656658	62.394	0.45847	63.137	62.824	63.282	0.74263					18	8	4	0	0	0	0.04038	1	23660	23660		75.761	33.921	1	2453200			49870	1261	36261	36552	48720	48720	4				-0.00045920637035123946
SLNEDMFKEKL	11	Unmodified	_SLNEDMFKEKL_					0	0	0			REV__PRAMEF18|p.D163N|1|0.04|ENSG00000279804|chr1:13225240-13225240|C/T|missense_variant	REV__PRAMEF18|p.D163N|1|0.04|ENSG00000279804|chr1:13225240-13225240|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	677.3687133789062	2	677.339578	1352.6646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.333	1	96.333	95.833	96.833	0								0	0	0	0.16273	1	35404	35404		4.5289	0	1		+		49871	27833	36262	36553	48721	48721					0.0023765693481436756
SLNENSEGT	9	Unmodified	_SLNENSEGT_					0	0	0		ENSG00000168246|ENST00000393792|UBTD2	ENSG00000168246|ENST00000393792|UBTD2	ENSG00000168246|ENST00000393792|UBTD2	MSMS	A375_MHC_IP_R1	1	475.6766052246094	2	475.706711	949.398869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.83	1	50.83	50.33	51.33	0								0	0	0	0.15486	1	18024	18024		10.824	0	1				49872	7276	36263	36554	48722	48722					-0.07785470863461796
SLNEQIALV	9	Unmodified	_SLNEQIALV_					0	0	0		nc|ENSG00000107897|Q5T8D3-4|ACBD5;nc|ENSG00000107897|Q5T8D3-2|ACBD5;ENSG00000107897|ENST00000396271|ACBD5;nc|ENSG00000107897|Q5T8D3|ACBD5	nc|ENSG00000107897|Q5T8D3-4|ACBD5	nc|ENSG00000107897|Q5T8D3-4|ACBD5	MULTI-SECPEP	A375_MHC_IP_R1	1	493.6633605957031	2	493.779482	985.544411	-0.33196	-0.00016391	0.071013	3.5065E-05	-0.26094	-0.00012885	493.77941953148365	93.793	0.5071	93.793	93.533	94.041	0					28	9	4	0	0	0	0.059859	1	34539	34539		81.89	21.816	1	5132500			49873	2768	36264	36555	48723	48723					0.051060367233731085
SLNEQIALV	9	Unmodified	_SLNEQIALV_					0	0	0		nc|ENSG00000107897|Q5T8D3-4|ACBD5;nc|ENSG00000107897|Q5T8D3-2|ACBD5;ENSG00000107897|ENST00000396271|ACBD5;nc|ENSG00000107897|Q5T8D3|ACBD5	nc|ENSG00000107897|Q5T8D3-4|ACBD5	nc|ENSG00000107897|Q5T8D3-4|ACBD5	MULTI-SECPEP	A375_MHC_IP_R2	2	494.17926025390625	2	493.779482	985.544411	-0.41467	-0.00020476	0.13371	6.6025E-05	-0.28096	-0.00013873	493.77949895438053	92.982	0.66077	93.721	93.392	94.053	0.73902					29	12	3	0	0	0	0.10103	1	35323	35323		71.922	20.292	1	6403400			49874	2768	36264	36555	48724	48724					0.051060367233731085
SLNEYQPKL	9	Unmodified	_SLNEYQPKL_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.R7429Ifs*19|1|0.07|ENSG00000131018|chr6:152214911-152214966|TCTTTCTGTAGTCTGAGAGGAGATCAGAGACCAATGGCGGTTCAGATTCTGCATTC/-|frameshift_variant;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-2|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6902465820312	2	546.290214	1090.56587	-0.58197	-0.00031793	0.40197	0.00021959	-0.18	-9.8332E-05	546.2902713655072	52.483	0.60925	52.483	52.186	52.796	0					17	11	2	0	0	0	0.11849	1	18656	18656		61.602	31.761	1	3182100			49875	4300	36265	36556	48725	48725					0.02421421752092101
SLNEYQPKL	9	Unmodified	_SLNEYQPKL_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.R7429Ifs*19|1|0.07|ENSG00000131018|chr6:152214911-152214966|TCTTTCTGTAGTCTGAGAGGAGATCAGAGACCAATGGCGGTTCAGATTCTGCATTC/-|frameshift_variant;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-2|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	A375_MHC_IP_R2	2	546.689208984375	2	546.290214	1090.56587	-1.0676	-0.00058319	0.41881	0.00022879	-0.64874	-0.0003544	546.2904243086615	51.746	0.56057	52.499	52.219	52.78	0.75225					14	10	2	0	0	0	0.27114	1	19481	19481		45.74	24.203	1	2920100			49876	4300	36265	36556	48726	48726					0.02421421752092101
SLNGDCDYY	9	Unmodified	_SLNGDCDYY_					0	0	0			REV__ENST00000478743.1_1_X:71710853-71792680:-|nuORF	REV__ENST00000478743.1_1_X:71710853-71792680:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	524.693603515625	2	525.197664	1048.38078	-0.58476	-0.00030711	-1.7872	-0.00093863	-2.3719	-0.0012457	525.1972482356992	65.266	0.46013	65.266	65.105	65.565	0					14	8	2	0	0	0	0.72507	2	23593	23593;23597		4.756	1.8668	1	1608000	+		49877	25222	36266	36557	48727;48728	48727					-0.14147929109822144
SLNGDCDYY	9	Unmodified	_SLNGDCDYY_					0	0	0			REV__ENST00000478743.1_1_X:71710853-71792680:-|nuORF	REV__ENST00000478743.1_1_X:71710853-71792680:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	525.133056640625	2	525.197664	1048.38078	-0.58476	-0.00030711	-1.7872	-0.00093863	-2.3719	-0.0012457	525.1972482356992	65.266	0.46013	65.266	65.105	65.565	0					14	8	2	0	0	0	0.77834	1	23687	23687		4.756	2.6963	1	1608000	+		49878	25222	36266	36557	48729	48729					-0.14147929109822144
SLNGDCDYY	9	Unmodified	_SLNGDCDYY_					0	0	0			REV__ENST00000478743.1_1_X:71710853-71792680:-|nuORF	REV__ENST00000478743.1_1_X:71710853-71792680:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	524.6769409179688	2	525.197664	1048.38078	-0.46702	-0.00024528	-2.2483	-0.0011808	-2.7153	-0.0014261	525.196832261652	64.659	0.5091	65.399	65.157	65.666	0.74023					16	9	2	0	0	0	0.72507	1	24552	24552		4.756	1.8668	1	1990800	+		49879	25222	36266	36557	48730	48730					-0.14147929109822144
SLNGEHPEV	9	Unmodified	_SLNGEHPEV_					0	0	0		ENST00000603027.5_2_10:75562299-75563341:-|nuORF	ENST00000603027.5_2_10:75562299-75563341:-|nuORF	ENST00000603027.5_2_10:75562299-75563341:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	491.6349792480469	2	491.235439	980.456324	-0.75562	-0.00037119	-0.1911	-9.3874E-05	-0.94671	-0.00046506	491.23537615616453	28.104	0.40509	28.782	28.655	29.06	0.67857					13	7	2	0	0	0	0.14422	1	9692	9692		36.127	0	1	4866600			49880	13891	36267	36558	48731	48731					-0.034685838672317004
SLNGKTFSF	9	Unmodified	_SLNGKTFSF_					0	0	0			REV__ENST00000370763.5_1_1:78470724-78470775:+|nuORF	REV__ENST00000370763.5_1_1:78470724-78470775:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	501.0953063964844	2	500.758549	999.502546	-0.99317	-0.00049734	-0.11193	-5.6049E-05	-1.1051	-0.00055339	500.7582690550152	59.244	0.45622	59.991	59.691	60.148	0.74714					13	8	2	0	0	0	0.28216	1	22367	22367		41.84	21.386	1	1048600	+		49881	24037	36268	36559	48732	48732					0.002774810348682877
SLNKAKKRRL	10	Unmodified	_SLNKAKKRRL_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MSMS	A375_MHC_IP_R2	2	405.2806396484375	3	405.266568	1212.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.258	1	61.003	60.503	61.503	0.74503								0	0	0	0.15588	1	22809	22809		1.7423	0.52744	1				49882	9866	36269	36560	48733	48733					0.17999557953544354
SLNKESVPLI	10	Unmodified	_SLNKESVPLI_					0	0	0			REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP	REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MSMS	A375_MHC_IP_R2	2	550.6773681640625	2	550.321514	1098.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.69	1	131.88	131.38	132.38	0.18953								0	0	0	0.15158	1	51802	51802		14.838	4.0143	1		+		49883	16752	36270	36561	48734	48734					0.08310567820285542
SLNKHESSFKQ	11	Unmodified	_SLNKHESSFKQ_					0	0	0			REV__nc|ENSG00000164164|Q01804-5|OTUD4	REV__nc|ENSG00000164164|Q01804-5|OTUD4	MULTI-MSMS	A375_MHC_IP_R1	1	435.95806884765625	3	435.557964	1303.65206	-0.14378	-6.2623E-05	-0.088425	-3.8514E-05	-0.2322	-0.00010114	435.55790145268134	33.952	1.3166	33.952	33.241	34.557	0					42	25	2	0	0	0	0.7328	1	11122	11122		6.2344	0.45093	1	2594900	+		49884	20460	36271	36562	48735	48735					0.012383815867906378
SLNKHESSFKQ	11	Unmodified	_SLNKHESSFKQ_					0	0	0			REV__nc|ENSG00000164164|Q01804-5|OTUD4	REV__nc|ENSG00000164164|Q01804-5|OTUD4	MULTI-MATCH	A375_MHC_IP_R2	2		3	435.557964	1303.65206	-0.49003	-0.00021344	-0.079923	-3.4811E-05	-0.56995	-0.00024825	435.55796806122635	33.095	1.2711	33.848	33.229	34.5	0.75225	-0.05205	5.6208E-06	NaN	6.2344	52	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2758600	+		49885	20460	36271	36562							0.012383815867906378
SLNKIQSNLS	10	Unmodified	_SLNKIQSNLS_					0	0	0			REV__ADAM18|p.P170S|3|0.21|ENSG00000168619|chr8:39610692-39610692|C/T|missense_variant	REV__ADAM18|p.P170S|3|0.21|ENSG00000168619|chr8:39610692-39610692|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	369.25897216796875	3	368.540022	1102.59824	0.23715	8.74E-05	2.2289	0.00082144	2.466	0.00090884	368.5421401323506	24.835	0.25493	24.835	24.698	24.953	0					5	4	2	0	0	0	0.91057	1	7095	7095		18.721	12.091	1	1471600	+		49886	15310	36272	36563	48736	48736					0.05104209155092576
SLNKKIDHELH	11	Unmodified	_SLNKKIDHELH_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MSMS	A375_MHC_IP_R2	2	667.3427734375	2	667.364776	1332.715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.76	1	116.45	115.95	116.95	0.68999								0	0	0	0.16307	1	43641	43641		2.7352	0.89096	1				49887	1262	36273	36564	48737	48737					0.061949473748200035
SLNKRVLF	8	Unmodified	_SLNKRVLF_					0	0	0			REV__nc|ENSG00000162620|A6PVS8-2|LRRIQ3	REV__nc|ENSG00000162620|A6PVS8-2|LRRIQ3	MULTI-SECPEP	A375_MHC_IP_R2	2	488.468994140625	2	488.800552	975.58655	-0.50088	-0.00024483	-0.26005	-0.00012711	-0.76093	-0.00037194	488.800369197713	44.274	0.40593	45.043	44.782	45.188	0.7691					11	7	2	0	0	0	0.94479	1	16519	16519		8.5933	0	1	1327700	+		49888	20276	36274	36565	48738	48738					0.09778056922425549
SLNKVPTKKNF	11	Unmodified	_SLNKVPTKKNF_					0	0	0		ENST00000568805.5_1_16:20809048-20811281:-|nuORF;nc|ENSG00000196678|A8K979-2|ERI2;ENSG00000196678|ENST00000357967|ERI2	ENST00000568805.5_1_16:20809048-20811281:-|nuORF	ENST00000568805.5_1_16:20809048-20811281:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	426.6190490722656	3	425.918834	1274.73467	-0.045796	-1.9505E-05	-0.41602	-0.00017719	-0.46181	-0.00019669	425.9186763317565	47.752	0.55733	48.513	48.275	48.833	0.76128					24	10	3	0	0	0	0.68072	1	17846	17846		17.049	8.0723	1	7719200			49889	9075	36275	36566	48739	48739					0.10829323385610223
SLNLRETNL	9	Unmodified	_SLNLRETNL_					0	0	0		ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R1	1	530.693603515625	2	530.293288	1058.57202	-0.59091	-0.00031335	1.2075	0.00064034	0.61662	0.00032699	530.2940825835267	53.402	0.60913	53.402	53.148	53.758	0					27	11	3	0	0	0	0.0042961	1	19041	19041		136.39	33.039	1	3657900			49890	1093	36276	36567	48740	48740					0.04507939983614051
SLNLRETNL	9	Unmodified	_SLNLRETNL_					0	0	0		ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R2	2	530.6934814453125	2	530.293288	1058.57202	-1.0614	-0.00056286	1.3131	0.00069632	0.25167	0.00013346	530.2940198195995	52.572	0.60708	53.324	52.983	53.59	0.75225					23	11	3	0	0	0	0.01185	1	19820	19820		93.938	11.409	1	4148200			49891	1093	36276	36567	48741	48741					0.04507939983614051
SLNMDYYTLP	10	Unmodified	_SLNMDYYTLP_					0	0	0			REV__nc|ENSG00000004866|Q9NRC1|ST7;REV__ENST00000480988.5_1_1:113119662-113161548:-|nuORF	REV__nc|ENSG00000004866|Q9NRC1|ST7	MULTI-SECPEP	A375_MHC_IP_R2	2	405.6029357910156	3	406.190002	1215.54818	-0.29436	-0.00011957	2.531	0.0010281	2.2367	0.00090851	406.1911803038969	19.892	0.30173	20.502	20.248	20.549	0.61029					6	5	2	0	0	0	0.85226	1	6080	6080		12.873	4.9272	1	439600	+		49892	16103;25252	36277	36568	48742	48742					-0.0509766156508249
SLNPRAGSPF	10	Unmodified	_SLNPRAGSPF_					0	0	0		PDLIM2|p.S129N|1|0.28|ENSG00000120913|chr8:22585087-22585087|G/A|missense_variant	PDLIM2|p.S129N|1|0.28|ENSG00000120913|chr8:22585087-22585087|G/A|missense_variant	PDLIM2|p.S129N|1|0.28|ENSG00000120913|chr8:22585087-22585087|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1934814453125	2	523.274898	1044.53524	-0.44358	-0.00023212	0.059037	3.0893E-05	-0.38455	-0.00020122	523.2749245052674	31.692	1.2712	31.692	31.363	32.634	0					62	24	5	0	0	0	0.050206	1	10213	10213		76.825	20.648	1	145160000			49893	15153	36278	36569	48743	48743					0.014756881576886371
SLNPRAGSPF	10	Unmodified	_SLNPRAGSPF_					0	0	0		PDLIM2|p.S129N|1|0.28|ENSG00000120913|chr8:22585087-22585087|G/A|missense_variant	PDLIM2|p.S129N|1|0.28|ENSG00000120913|chr8:22585087-22585087|G/A|missense_variant	PDLIM2|p.S129N|1|0.28|ENSG00000120913|chr8:22585087-22585087|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	523.6743774414062	2	523.274898	1044.53524	-0.58433	-0.00030577	-0.22545	-0.00011797	-0.80978	-0.00042374	523.2747719903625	31.026	1.2193	31.744	31.467	32.686	0.71857					66	23	5	0	0	0	0.064809	1	10904	10904		71.708	6.4729	1	153610000			49894	15153	36278	36569	48744	48744					0.014756881576886371
SLNRHMRSH	9	Unmodified	_SLNRHMRSH_					0	0	0		ZNF490|p.G284Efs*11|1|0.33|ENSG00000188033|chr19:12581224-12581224|C/-|frameshift_variant;ENSG00000188033|ENST00000311437|ZNF490;ENSG00000105708|ENST00000344099|ZNF14	ZNF490|p.G284Efs*11|1|0.33|ENSG00000188033|chr19:12581224-12581224|C/-|frameshift_variant	ZNF490|p.G284Efs*11|1|0.33|ENSG00000188033|chr19:12581224-12581224|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	379.29254150390625	3	379.861324	1136.56214	0.066178	2.5138E-05	-0.80393	-0.00030538	-0.73775	-0.00028024	379.8609178270407	23.762	0.25386	23.762	23.635	23.889	0					6	4	2	0	0	0	0.67483	1	6604	6604		10.151	4.8537	1	4110900			49895	8876	36279	36570	48745	48745					-0.000675265027439309
SLNRIEEKF	9	Unmodified	_SLNRIEEKF_					0	0	0			REV__OLFM3|p.S327Ifs*12|1|0.14|ENSG00000118733|chr1:101804697-101804698|-/GACTACAATG|frameshift_variant;REV__nc|ENSG00000118733|Q96PB7-6|OLFM3	REV__OLFM3|p.S327Ifs*12|1|0.14|ENSG00000118733|chr1:101804697-101804698|-/GACTACAATG|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	379.60833740234375	3	379.208384	1134.60332	0.42169	0.00015991	-0.41047	-0.00015565	0.011227	4.2574E-06	379.2082428850389	43.559	0.55895	43.559	43.249	43.808	0					18	10	2	0	0	0	0.16945	1	15147	15147		40.239	1.6245	1	3671900	+		49896	18052;27195	36280	36571	48746	48746					0.04140513017705416
SLNRIEEKF	9	Unmodified	_SLNRIEEKF_					0	0	0			REV__OLFM3|p.S327Ifs*12|1|0.14|ENSG00000118733|chr1:101804697-101804698|-/GACTACAATG|frameshift_variant;REV__nc|ENSG00000118733|Q96PB7-6|OLFM3	REV__OLFM3|p.S327Ifs*12|1|0.14|ENSG00000118733|chr1:101804697-101804698|-/GACTACAATG|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	379.208384	1134.60332	0.42169	0.00015991	-0.41047	-0.00015565	0.011227	4.2574E-06	379.2082428850389	43.559	0.55895	43.559	43.249	43.808	0	0.064202	4.9583E-05	NaN	40.239	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3671900	+		49897	18052;27195	36280	36571							0.04140513017705416
SLNRKLHSV	9	Unmodified	_SLNRKLHSV_					0	0	0			REV__ENST00000231461.9_1_5:100238801-100238969:-|nuORF	REV__ENST00000231461.9_1_5:100238801-100238969:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	527.189697265625	2	527.311815	1052.60908	-0.5164	-0.0002723	-0.2615	-0.00013789	-0.7779	-0.0004102	527.3116801079811	34.722	0.30319	34.722	34.507	34.81	0					7	5	2	0	0	0	0.78798	1	11405	11405		7.2892	0	1	2257300	+		49898	23070	36281	36572	48747	48747					0.08487656320016868
SLNRKLHSV	9	Unmodified	_SLNRKLHSV_					0	0	0			REV__ENST00000231461.9_1_5:100238801-100238969:-|nuORF	REV__ENST00000231461.9_1_5:100238801-100238969:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	527.311815	1052.60908	-1.0104	-0.0005328	0.24772	0.00013063	-0.76268	-0.00040217	527.3122509784178	33.822	0.35415	34.575	34.399	34.753	0.75225	-0.073536	0.00031599	NaN	7.2892	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1571600	+		49899	23070	36281	36572							0.08487656320016868
SLNRRDEDEDD	11	Unmodified	_SLNRRDEDEDD_					0	0	0		NOL4|p.G381R|1|0.34|ENSG00000101746|chr18:33958334-33958334|C/T|missense_variant	NOL4|p.G381R|1|0.34|ENSG00000101746|chr18:33958334-33958334|C/T|missense_variant	NOL4|p.G381R|1|0.34|ENSG00000101746|chr18:33958334-33958334|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	682.200439453125	2	682.289659	1362.56476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.7	1	125.03	124.53	125.53	0.32969								0	0	0	0.16191	1	48305	48305		8.7454	3.0136	1				49900	15014	36282	36573	48748	48748					-0.10201489145424603
SLNSLFLYM	9	Unmodified	_SLNSLFLYM_					0	0	0			REV__ENSG00000186881|ENST00000334726|OR13F1	REV__ENSG00000186881|ENST00000334726|OR13F1	MULTI-SECPEP	A375_MHC_IP_R2	2	544.7106323242188	2	544.27826	1086.54197	-0.9695	-0.00052768	-0.063238	-3.4419E-05	-1.0327	-0.00056209	544.2780236539407	54.85	0.56134	55.601	55.32	55.881	0.75075					15	10	2	0	0	0	0.53748	1	20735	20735		24.021	0	1	1885100	+		49901	21993	36283	36574	48749	48749					0.0021586499406112125
SLNSNVYDV	9	Unmodified	_SLNSNVYDV_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-SECPEP	A375_MHC_IP_R2	2	506.1428527832031	2	505.743096	1009.47164	-1.0188	-0.00051523	-0.014305	-7.2346E-06	-1.0331	-0.00052246	505.7430738900611	60.948	0.90819	61.693	61.364	62.272	0.74503					37	17	3	0	0	0	0.011107	1	23036	23036		134.3	45.342	1	26431000			49902	7930	36284	36575	48750	48750					-0.032717170700493625
SLNSQHLQLFF	11	Unmodified	_SLNSQHLQLFF_					0	0	0			REV__ENST00000541477.5_1_12:7032669-7032828:+|nuORF	REV__ENST00000541477.5_1_12:7032669-7032828:+|nuORF	MSMS	A375_MHC_IP_R2	2	667.4453125	2	667.348594	1332.68264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.566	1	65.306	64.806	65.806	0.74022								0	0	0	0.16258	1	24479	24479		5.2969	2.0156	1		+		49903	25959	36285	36576	48751	48751					0.02960159971826215
SLNSTLQVQMS	11	Unmodified	_SLNSTLQVQMS_					0	0	0		ENST00000272133.3_1_1:224927365-224927635:+|nuORF	ENST00000272133.3_1_1:224927365-224927635:+|nuORF	ENST00000272133.3_1_1:224927365-224927635:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	604.703125	2	604.302995	1206.59144	-0.51623	-0.00031196	0.54162	0.0003273	0.025387	1.5341E-05	604.3031232941557	106.88	0.8112	107.64	107.24	108.05	0.75977					28	15	3	0	0	0	0.59391	1	40402	40402		23.79	5.4167	1	3991900			49904	10383	36286	36577	48752	48752					-0.0035947178776041255
SLNSTLQVQMS	11	Unmodified	_SLNSTLQVQMS_					0	0	0		ENST00000272133.3_1_1:224927365-224927635:+|nuORF	ENST00000272133.3_1_1:224927365-224927635:+|nuORF	ENST00000272133.3_1_1:224927365-224927635:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	604.302995	1206.59144	-0.10471	-6.3279E-05	0.7125	0.00043057	0.60779	0.00036729	604.3033705746941	107.76	0.56096	107.76	107.44	108	0	0.057756	0.00014797	NaN	23.79	26	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3627600			49905	10383	36286	36577							-0.0035947178776041255
SLNTGIITV	9	Unmodified	_SLNTGIITV_					0	0	0		ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF;nc|ENSG00000137845|O14672-2|ADAM10	ENSG00000137845|ENST00000260408|ADAM10	ENSG00000137845|ENST00000260408|ADAM10	MULTI-MSMS	A375_MHC_IP_R1	1	917.92919921875	1	917.530224	916.522947	-0.23972	-0.00021995	0.40623	0.00037273	0.16651	0.00015278	917.5305376854267	94.981	0.66118	94.981	94.651	95.312	0					19	12	2	0	0	0	0.017727	1	34852	34852		86.332	10.571	1	6151700			49906	4929	36287	36578	48753	48753					0.06134651694662807
SLNTGIITV	9	Unmodified	_SLNTGIITV_					0	0	0		ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF;nc|ENSG00000137845|O14672-2|ADAM10	ENSG00000137845|ENST00000260408|ADAM10	ENSG00000137845|ENST00000260408|ADAM10	MULTI-MSMS	A375_MHC_IP_R1	1	459.66864013671875	2	459.26875	916.522947	-0.38112	-0.00017503	0.36537	0.0001678	-0.015749	-7.2329E-06	459.2688382506123	94.997	0.66171	94.997	94.599	95.261	0					28	12	3	0	0	0	0.018261	1	34889	34889		85.642	3.7513	1	3846200			49907	4929	36287	36578	48754	48754					0.06134651694662807
SLNTGIITV	9	Unmodified	_SLNTGIITV_					0	0	0		ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF;nc|ENSG00000137845|O14672-2|ADAM10	ENSG00000137845|ENST00000260408|ADAM10	ENSG00000137845|ENST00000260408|ADAM10	MULTI-MATCH	A375_MHC_IP_R2	2		1	917.530224	916.522947	-0.14768	-0.0001355	0.32989	0.00030269	0.18222	0.00016719	917.5305455097333	94.149	0.65828	94.894	94.566	95.224	0.74474	-0.043824	-3.1614E-05	NaN	86.332	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5984300			49908	4929	36287	36578							0.06134651694662807
SLNTWIHVW	9	Unmodified	_SLNTWIHVW_					0	0	0		ENST00000441788.6_1_19:3536644-3537031:+|nuORF	ENST00000441788.6_1_19:3536644-3537031:+|nuORF	ENST00000441788.6_1_19:3536644-3537031:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	386.5997009277344	3	385.869703	1154.58728	0.79651	0.00030735	0.40074	0.00015464	1.1973	0.00046199	385.8698619693392	44.725	0.71125	44.725	44.523	45.234	0					26	13	3	0	0	0	0.78348	1	15559	15559		0.96228	0	1	2301400			49909	11986	36288	36579	48755	48755					0.016168515714753084
SLNVQVKNI	9	Unmodified	_SLNVQVKNI_					0	0	0			REV__SPHKAP|p.E896K|1|0.36|ENSG00000153820|chr2:228018168-228018168|C/T|missense_variant	REV__SPHKAP|p.E896K|1|0.36|ENSG00000153820|chr2:228018168-228018168|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	507.9803771972656	2	507.800749	1013.58694	0.1593	8.0892E-05	-0.89355	-0.00045375	-0.73425	-0.00037285	507.8004164595409	44.954	0.40665	44.954	44.827	45.234	0					9	7	2	0	0	0	0.71341	1	15790	15790		8.7454	0	1	4544800	+		49910	28032	36289	36580	48756	48756					0.08069431851606623
SLNVSKQLKW	10	Unmodified	_SLNVSKQLKW_					0	0	0			REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	MSMS	A375_MHC_IP_R1	1	401.6379699707031	3	401.567912	1201.68191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.072	1	47.072	46.572	47.572	0								0	0	0	0.15486	1	16545	16545		5.0475	0.93089	1		+		49911	19838	36290	36581	48757	48757					0.0891336532281457
SLNWRPPCLF	10	Unmodified	_SLNWRPPCLF_					0	0	0		ENST00000460337.5_1_1:213180435-213186753:-|nuORF;ENSG00000174606|ENST00000366962|ANGEL2	ENST00000460337.5_1_1:213180435-213186753:-|nuORF	ENST00000460337.5_1_1:213180435-213186753:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	411.2774353027344	3	411.546343	1231.6172	-0.19777	-8.139E-05	1.3618	0.00056044	1.164	0.00047905	411.5468811407498	34.951	0.40312	35.715	35.475	35.878	0.76338					10	7	2	0	0	0	0.92603	1	12689	12689		8.9762	0	1	1291900			49912	12164	36291	36582	48758	48758					0.010654672451437364
SLNYFFRAI	9	Unmodified	_SLNYFFRAI_					0	0	0		ENSG00000092020|ENST00000261475|PPP2R3C;nc|ENSG00000092020|Q969Q6-2|PPP2R3C	ENSG00000092020|ENST00000261475|PPP2R3C	ENSG00000092020|ENST00000261475|PPP2R3C	MSMS	A375_MHC_IP_R1	1	377.5711364746094	3	377.537953	1129.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.994	1	23.994	23.494	24.494	0								0	0	0	0.15386	1	6703	6703		15.248	0	1				49913	1990	36292	36583	48759	48759					0.032417357142321634
SLPAFLKLWIE	11	Unmodified	_SLPAFLKLWIE_					0	0	0		ENST00000437413.2_1_16:21498935-21531497:-|nuORF;nc|ENSG00000260727|Q8MH63|SLC7A5P1;nc|ENSG00000258186|Q9GIP4-1|SLC7A5P2;nc|ENSG00000258186|Q9GIP4|SLC7A5P2;ENST00000522841.6_1_16:21495824-21531728:-|nuORF;ENSG00000103257|ENST00000261622|SLC7A5	ENST00000437413.2_1_16:21498935-21531497:-|nuORF	ENST00000437413.2_1_16:21498935-21531497:-|nuORF	MSMS	A375_MHC_IP_R2	2	658.884521484375	2	658.884281	1315.75401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.946	1	69.681	69.181	70.181	0.73511								0	0	0	0.16258	1	26124	26124		5.2969	0	1				49914	2438	36293	36584	48760	48760					0.1087627967649496
SLPAGADPQQV	11	Unmodified	_SLPAGADPQQV_					0	0	0		ENSG00000059691|ENST00000263985|GATB	ENSG00000059691|ENST00000263985|GATB	ENSG00000059691|ENST00000263985|GATB	MULTI-SECPEP	A375_MHC_IP_R1	1	542.1773071289062	2	541.77747	1081.54039	-0.47748	-0.00025869	-0.30779	-0.00016675	-0.78527	-0.00042544	541.7772039803152	51.932	0.61192	51.932	51.625	52.237	0					26	10	3	0	0	0	0.97182	1	18401	18401		18.373	8.8291	1	11970000			49915	1304	36294	36585	48761	48761					0.0028794722966267727
SLPAGADPQQV	11	Unmodified	_SLPAGADPQQV_					0	0	0		ENSG00000059691|ENST00000263985|GATB	ENSG00000059691|ENST00000263985|GATB	ENSG00000059691|ENST00000263985|GATB	MULTI-SECPEP	A375_MHC_IP_R2	2	542.1764526367188	2	541.77747	1081.54039	-0.95329	-0.00051647	-0.39221	-0.00021249	-1.3455	-0.00072896	541.7771937732704	51.144	0.70807	51.898	51.513	52.221	0.75384					39	13	4	0	0	0	0.9574	1	19190	19190		10.151	0	1	9802600			49916	1304	36294	36585	48762	48762					0.0028794722966267727
SLPAIHLTSF	10	Unmodified	_SLPAIHLTSF_					0	0	0		ENST00000449779.5_1_7:76982894-76984552:-|nuORF	ENST00000449779.5_1_7:76982894-76984552:-|nuORF	ENST00000449779.5_1_7:76982894-76984552:-|nuORF	MSMS	A375_MHC_IP_R2	2	543.4166259765625	2	543.303124	1084.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.338	1	99.098	98.598	99.598	0.75977								0	0	0	0.14673	1	37309	37309		24.021	9.1823	1				49917	12061	36295	36586	48763	48763					0.05278315994382865
SLPALAVP	8	Unmodified	_SLPALAVP_					0	0	0		nc|ENSG00000177030|O75398-5|DEAF1;nc|ENSG00000177030|O75398-4|DEAF1;nc|ENSG00000177030|O75398-3|DEAF1;ENSG00000177030|ENST00000382409|DEAF1	nc|ENSG00000177030|O75398-5|DEAF1	nc|ENSG00000177030|O75398-5|DEAF1	MSMS	A375_MHC_IP_R2	2	384.23065185546875	2	384.236722	766.45889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.028	1	77.771	77.271	78.271	0.74293								0	0	0	0.16876	1	29247	29247		5.7604	0	1				49918	8055	36296	36587	48764	48764					0.06631916328376519
SLPASPLASDL	11	Unmodified	_SLPASPLASDL_					0	0	0		ENST00000519757.5_1_5:179294406-179298488:-|nuORF	ENST00000519757.5_1_5:179294406-179298488:-|nuORF	ENST00000519757.5_1_5:179294406-179298488:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	357.9377136230469	3	357.529123	1069.56554	0.25116	8.9795E-05	0.78243	0.00027974	1.0336	0.00036954	357.529313693936	35.779	0.3069	35.779	35.625	35.932	0					10	5	2	0	0	0	0.95991	1	11946	11946		2.4348	0	1	1140800			49919	12985	36297	36588	48765	48765					0.033540020322334385
SLPDGAPPVTV	11	Unmodified	_SLPDGAPPVTV_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	A375_MHC_IP_R1	1	527.1844482421875	2	526.784764	1051.55498	-0.25913	-0.00013651	-0.34923	-0.00018397	-0.60836	-0.00032048	526.7844814785905	71.818	0.45232	71.818	71.565	72.018	0					13	8	2	0	0	0	0.84606	1	26120	26120		27.629	27.629	1	5834000			49920	4224	36298	36589	48766	48766					0.03126019377805278
SLPDHLPSV	9	Unmodified	_SLPDHLPSV_					0	0	0		ENST00000492556.5_1_22:51020665-51020803:-|nuORF;ENST00000484266.5_1_22:51019047-51020803:-|nuORF;ENST00000465842.1_1_22:51020081-51020803:-|nuORF;ENST00000481673.5_1_22:51020665-51021234:-|nuORF;ENST00000468532.5_1_22:51018168-51020803:-|nuORF;ENSG00000100288|ENST00000406938|CHKB	ENST00000492556.5_1_22:51020665-51020803:-|nuORF	ENST00000492556.5_1_22:51020665-51020803:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	483.1578674316406	2	482.758549	963.502546	-0.67258	-0.00032469	0.436	0.00021048	-0.23658	-0.00011421	482.7587032470969	67.424	0.91431	67.424	66.99	67.904	0					40	17	3	0	0	0	0.012968	1	24383	24383		92.491	31.134	1	11621000			49921	2152	36299	36590	48767	48767					0.019334810348595965
SLPDHLPSV	9	Unmodified	_SLPDHLPSV_					0	0	0		ENST00000492556.5_1_22:51020665-51020803:-|nuORF;ENST00000484266.5_1_22:51019047-51020803:-|nuORF;ENST00000465842.1_1_22:51020081-51020803:-|nuORF;ENST00000481673.5_1_22:51020665-51021234:-|nuORF;ENST00000468532.5_1_22:51018168-51020803:-|nuORF;ENSG00000100288|ENST00000406938|CHKB	ENST00000492556.5_1_22:51020665-51020803:-|nuORF	ENST00000492556.5_1_22:51020665-51020803:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	483.15838623046875	2	482.758549	963.502546	-0.67898	-0.00032778	0.4516	0.00021801	-0.22738	-0.00010977	482.75868284906056	66.733	0.81738	67.469	66.983	67.801	0.73631					45	15	4	0	0	0	0.064992	1	25207	25207		78.149	42.105	1	12959000			49922	2152	36299	36590	48768	48768					0.019334810348595965
SLPEEEWER	9	Unmodified	_SLPEEEWER_					0	0	0			REV__ENSG00000140527|ENST00000268130|WDR93	REV__ENSG00000140527|ENST00000268130|WDR93	MULTI-SECPEP	A375_MHC_IP_R2	2	392.9463806152344	3	392.184016	1173.53022	-0.23232	-9.1112E-05	-0.22949	-9.0002E-05	-0.46181	-0.00018111	392.18393782253105	39.913	0.50771	40.688	40.422	40.93	0.77451					14	9	2	0	0	0	0.75164	1	14755	14755		9.544	2.0669	1	1643200	+		49923	19221	36300	36591	48769	48769					-0.04960660495589764
SLPEELNRV	9	Unmodified	_SLPEELNRV_					0	0	0		ENSG00000137815|ENST00000389629|RTF1	ENSG00000137815|ENST00000389629|RTF1	ENSG00000137815|ENST00000389629|RTF1	MULTI-SECPEP	A375_MHC_IP_R1	1	529.1876220703125	2	528.787838	1055.56112	-0.54152	-0.00028635	0.39427	0.00020849	-0.14725	-7.7862E-05	528.7878768242119	54.854	1.1712	54.854	54.567	55.738	0					47	22	4	0	0	0	0.73008	1	19578	19578		17.113	5.6182	1	9650200			49924	4919	36301	36592	48770	48770					0.035565376093245504
SLPEELNRV	9	Unmodified	_SLPEELNRV_					0	0	0		ENSG00000137815|ENST00000389629|RTF1	ENSG00000137815|ENST00000389629|RTF1	ENSG00000137815|ENST00000389629|RTF1	MULTI-MATCH	A375_MHC_IP_R2	2		2	528.787838	1055.56112	-0.87291	-0.00046158	-0.12208	-6.4554E-05	-0.99499	-0.00052614	528.7877737973566	54.089	0.56134	54.84	54.557	55.118	0.75105	-0.0067259	-0.0001347	NaN	49.554	27	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11319000			49925	4919	36301	36592							0.035565376093245504
SLPEFSFTAS	10	Unmodified	_SLPEFSFTAS_					0	0	0			REV__ENSG00000120451|ENST00000265909|SNX19;REV__ENST00000452841.1_1_13:19467552-19468185:-|nuORF	REV__ENSG00000120451|ENST00000265909|SNX19	MULTI-SECPEP	A375_MHC_IP_R1	1	361.93292236328125	3	362.50984	1084.50769	-0.080595	-2.9216E-05	-0.84617	-0.00030675	-0.92677	-0.00033596	362.84495407576566	39.721	0.50797	39.721	39.491	39.999	0					11	7	2	0	0	0	0.91556	1	13658	13658		5.7834	2.4638	1	888060	+		49926	18123;24905	36302	36593	48771	48771					-0.03118259893199138
SLPELIKEV	9	Unmodified	_SLPELIKEV_					0	0	0		ENSG00000131459|ENST00000253778|GFPT2	ENSG00000131459|ENST00000253778|GFPT2	ENSG00000131459|ENST00000253778|GFPT2	MULTI-MSMS	A375_MHC_IP_R2	2	514.7127685546875	2	514.305332	1026.59611	-0.65511	-0.00033692	-3.8296	-0.0019696	-4.4847	-0.0023065	514.3024510048941	87.335	0.85753	88.068	87.662	88.52	0.733					25	16	3	0	0	0	0.22013	1	33178	33178		36.506	0	1	1728600			49927	4330	36303	36594	48772	48772					0.08387780417274371
SLPELIKEV	9	Unmodified	_SLPELIKEV_					0	0	0		ENSG00000131459|ENST00000253778|GFPT2	ENSG00000131459|ENST00000253778|GFPT2	ENSG00000131459|ENST00000253778|GFPT2	MULTI-MSMS	A375_MHC_IP_R2	2	514.704833984375	2	514.305332	1026.59611	-0.67067	-0.00034493	-0.23437	-0.00012054	-0.90504	-0.00046547	514.3048044651903	93.103	1.1661	93.842	93.19	94.356	0.73901					34	22	2	0	0	0	0.095851	1	35360	35360		51.415	0	1	2982200			49928	4330	36303	36594	48773	48773					0.08387780417274371
SLPELVHAV	9	Unmodified	_SLPELVHAV_					0	0	0		nc|ENSG00000149212|P58005-3|SESN3;nc|ENSG00000149212|P58005-4|SESN3;ENSG00000149212|ENST00000536441|SESN3	nc|ENSG00000149212|P58005-3|SESN3	nc|ENSG00000149212|P58005-3|SESN3	MULTI-SECPEP	A375_MHC_IP_R1	1	483.1764831542969	2	482.776742	963.538931	-0.35313	-0.00017048	0.43791	0.00021141	0.084783	4.0931E-05	482.77676573699773	75.773	0.60424	75.773	75.362	75.966	0					18	11	2	0	0	0	0.40041	1	27595	27595		38.151	13.477	1	1306000			49929	5788	36304	36595	48774	48774					0.05570357931560466
SLPEVLPIL	9	Unmodified	_SLPEVLPIL_					0	0	0		nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6	nc|ENSG00000091409|P23229-4|ITGA6	nc|ENSG00000091409|P23229-4|ITGA6	MULTI-MSMS	A375_MHC_IP_R1	1	491.2052307128906	2	490.804968	979.595384	-0.54952	-0.00026971	0.24177	0.00011866	-0.30776	-0.00015105	490.8050340097405	131.91	0.25203	131.91	131.78	132.03	0					10	4	3	0	0	0	0.010002	1	50871	50871		123.1	13.467	1	10711000			49930	14499	36305	36596	48775	48775					0.1047698576824132
SLPFIRCHY	9	Unmodified	_SLPFIRCHY_					0	0	0			REV__ENST00000540779.1_1_12:122359430-122370014:+|nuORF	REV__ENST00000540779.1_1_12:122359430-122370014:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	379.95733642578125	3	379.195421	1134.56443	0.28808	0.00010924	-2.3729	-0.0008998	-2.0848	-0.00079056	379.1953897592532	34.24	0.50581	34.24	34.001	34.507	0					17	9	4	0	0	0	0.77003	1	11276	11276		11.495	3.3392	1	1601000	+		49931	25954	36306	36597	48776	48776					0.002535091823347102
SLPFKLIKVY	10	Unmodified	_SLPFKLIKVY_					0	0	0			REV__ENST00000542527.6_1_16:22092763-22092889:+|nuORF	REV__ENST00000542527.6_1_16:22092763-22092889:+|nuORF	MSMS	A375_MHC_IP_R1	1	604.4335327148438	2	604.376092	1206.73763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.654	1	83.654	83.154	84.154	0								0	0	0	0.1552	1	30615	30615		3.9444	0	1		+		49932	25968	36307	36598	48777	48777					0.1425319851043696
SLPFLGSSFW	10	Unmodified	_SLPFLGSSFW_					0	0	0			REV__ENST00000375663.7_1_6:31749330-31749528:-|nuORF	REV__ENST00000375663.7_1_6:31749330-31749528:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	571.1900024414062	2	570.78985	1139.56515	-0.1855	-0.00010588	-0.07263	-4.1457E-05	-0.25813	-0.00014734	570.7899039071202	101.28	0.45715	102.05	101.75	102.21	0.76428					20	8	3	0	0	0	0.91909	1	38412	38412		13.906	3.8321	1	2238600	+		49933	22512	36308	36599	48778	48778					0.0009462710304433131
SLPFSLQNI	9	Unmodified	_SLPFSLQNI_					0	0	0			REV__nc|ENSG00000126838|P20742-2|PZP	REV__nc|ENSG00000126838|P20742-2|PZP	MULTI-SECPEP	A375_MHC_IP_R1	1	510.18157958984375	2	509.782025	1017.5495	-0.43254	-0.0002205	-0.3353	-0.00017093	-0.76784	-0.00039143	509.7820566817562	74.733	0.76091	74.733	74.451	75.211	0					24	14	3	0	0	0	0.20567	1	27225	27225		30.637	6.616	1	3530900	+		49934	18400	36309	36600	48779	48779					0.041423405859859486
SLPGEVESSLF	11	Unmodified	_SLPGEVESSLF_					0	0	0		ENST00000561675.1_1_16:90086151-90099141:+|nuORF	ENST00000561675.1_1_16:90086151-90099141:+|nuORF	ENST00000561675.1_1_16:90086151-90099141:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	582.666259765625	2	582.792786	1163.57102	-0.42856	-0.00024976	-1.1036	-0.00064319	-1.5322	-0.00089296	582.7903933666092	67.149	0.40456	67.885	67.648	68.052	0.73631					10	7	2	0	0	0	0.78118	1	25455	25455		26.268	4.7312	1	954240			49935	13511	36310	36601	48780	48780					-0.004223191759365363
SLPGNFFYL	9	Unmodified	_SLPGNFFYL_					0	0	0		ENST00000464074.6_1_10:16769067-16859404:-|nuORF;nc|ENSG00000148484|Q15404-2|RSU1;ENSG00000148484|ENST00000345264|RSU1	ENST00000464074.6_1_10:16769067-16859404:-|nuORF	ENST00000464074.6_1_10:16769067-16859404:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	528.6387939453125	2	529.271293	1056.52803	-0.54338	-0.0002876	-0.75745	-0.0004009	-1.3008	-0.00068849	529.771930968245	83.248	0.65938	83.248	82.924	83.583	0					28	12	3	0	0	0	0.65246	1	30573	30573		10.824	0	1	3108400			49936	5747	36311	36602	48781	48781					0.002029555572789832
SLPGQVWS	8	Unmodified	_SLPGQVWS_					0	0	0			REV__ENST00000232854.8_1_3:50606980-50608690:+|nuORF	REV__ENST00000232854.8_1_3:50606980-50608690:+|nuORF	MSMS	A375_MHC_IP_R1	1	437.1568908691406	2	437.226885	872.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.92	1	108.92	108.42	109.42	0								0	0	0	0.16876	1	39954	39954		5.7604	0	1		+		49937	23072	36312	36603	48782	48782					-0.0021045968237558554
SLPGRCGG	8	Unmodified	_SLPGRCGG_					0	0	0		ENST00000519626.1_1_8:66754352-66754496:-|nuORF	ENST00000519626.1_1_8:66754352-66754496:-|nuORF	ENST00000519626.1_1_8:66754352-66754496:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	747.032470703125	1	746.361384	745.354108	-0.3142	-0.00023451	3.6591	0.002731	3.3449	0.0024965	746.3663749686517	106.85	0.30672	106.85	106.68	106.98	0					7	5	2	0	0	0	0.972	1	39161	39161		2.3027	0	1	1596400			49938	12981	36313	36604	48783	48783					-0.028755284198268782
SLPGRDFLR	9	Unmodified	_SLPGRDFLR_					0	0	0		nc|ENSG00000196092|Q02548-5|PAX5;nc|ENSG00000196092|Q02548-10|PAX5;nc|ENSG00000196092|Q02548-4|PAX5;nc|ENSG00000196092|Q02548-11|PAX5;nc|ENSG00000196092|Q02548-9|PAX5;nc|ENSG00000196092|Q02548-3|PAX5;nc|ENSG00000196092|Q02548-7|PAX5;nc|ENSG00000196092|Q02548-8|PAX5;nc|ENSG00000196092|Q02548-6|PAX5;nc|ENSG00000196092|Q02548-2|PAX5;ENSG00000196092|ENST00000358127|PAX5	nc|ENSG00000196092|Q02548-5|PAX5	nc|ENSG00000196092|Q02548-5|PAX5	MULTI-SECPEP	A375_MHC_IP_R1	1	353.9366760253906	3	354.201452	1059.58253	-0.16764	-5.9377E-05	-0.041956	-1.4861E-05	-0.20959	-7.4238E-05	354.20142078628754	36.966	1.2172	36.966	36.339	37.556	0					29	23	3	0	0	0	0.71071	1	12641	12641		14.405	1.3629	1	2940900			49939	8993	36314	36605	48784	48784					0.05511967428697062
SLPGRQTKT	9	Unmodified	_SLPGRQTKT_					0	0	0			REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	MULTI-MSMS	A375_MHC_IP_R1	1	494.6822509765625	2	494.282723	986.550893	-0.39794	-0.0001967	0.034208	1.6908E-05	-0.36374	-0.00017979	494.2826297478287	118.85	1.7271	118.85	118.42	120.15	0					48	33	2	0	0	0	0.69674	1	44139	44139		7.2892	0.56607	1	16742000	+		49940	16937	36315	36606	48785	48785					0.057079746747604077
SLPHLFVG	8	Unmodified	_SLPHLFVG_					0	0	0			REV__ARHGEF1|p.S325F|1|0.29|ENSG00000076928|chr19:41895445-41895445|C/T|missense_variant	REV__ARHGEF1|p.S325F|1|0.29|ENSG00000076928|chr19:41895445-41895445|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	435.2822265625	2	435.247621	868.480688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138	1	138	137.5	138.5	0								0	0	0	0.16876	1	53100	53100		5.2307	2.6532	1		+		49941	15440	36316	36607	48786	48786					0.0411872107695217
SLPHPAGWQYF	11	Unmodified	_SLPHPAGWQYF_					0	0	0		ENST00000359867.7_2_22:38689311-38694809:-|nuORF;ENST00000431611.5_2_22:38689311-38696738:-|nuORF	ENST00000359867.7_2_22:38689311-38694809:-|nuORF	ENST00000359867.7_2_22:38689311-38694809:-|nuORF	MSMS	A375_MHC_IP_R1	1	435.2823486328125	3	434.880379	1301.61931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.996	1	73.996	73.496	74.496	0								0	0	0	0.16334	1	26952	26952		1.3296	0.11481	1				49942	11018	36317	36608	48787	48787					-0.019437807453869027
SLPIHTRRI	9	Unmodified	_SLPIHTRRI_					0	0	0			REV__ENST00000423963.1_1_1:235093047-235095563:+|nuORF	REV__ENST00000423963.1_1_1:235093047-235095563:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	365.2927551269531	3	364.89273	1091.65636	0.0089524	3.2667E-06	0.32327	0.00011796	0.33223	0.00012123	364.89283126278536	32.473	0.75867	32.473	32.179	32.938	0					41	14	4	0	0	0	0.052747	1	10455	10455		63.227	7.9928	1	57028000	+		49943	24619	36318	36609	48788	48788					0.11419935591038666
SLPIHTRRI	9	Unmodified	_SLPIHTRRI_					0	0	0			REV__ENST00000423963.1_1_1:235093047-235095563:+|nuORF	REV__ENST00000423963.1_1_1:235093047-235095563:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	365.2926025390625	3	364.89273	1091.65636	-0.010203	-3.7229E-06	0.14641	5.3425E-05	0.13621	4.9703E-05	364.89277227731225	31.538	0.66163	32.257	31.974	32.636	0.71857					36	12	4	0	0	0	0.042871	1	11097	11097		67.081	8.0283	1	57032000	+		49944	24619	36318	36609	48789	48789					0.11419935591038666
SLPIHTRRI	9	Unmodified	_SLPIHTRRI_					0	0	0			REV__ENST00000423963.1_1_1:235093047-235095563:+|nuORF	REV__ENST00000423963.1_1_1:235093047-235095563:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	364.89273	1091.65636	-0.010203	-3.7229E-06	0.14641	5.3425E-05	0.13621	4.9703E-05	364.89277227731225	31.538	0.66163	32.257	31.974	32.636	0.71857	-0.10818	-0.0001022	NaN	67.081	36	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57032000	+		49945	24619	36318	36609							0.11419935591038666
SLPIPHQEL	9	Unmodified	_SLPIPHQEL_					0	0	0		nc|ENSG00000139625|Q12852|MAP3K12;ENSG00000139625|ENST00000547488|MAP3K12;ENST00000552365.1_1_12:53874968-53878035:-|nuORF;ENST00000547020.1_1_12:53875694-53876159:-|nuORF;ENST00000551511.5_1_12:53874968-53876159:-|nuORF	nc|ENSG00000139625|Q12852|MAP3K12	nc|ENSG00000139625|Q12852|MAP3K12	MULTI-MSMS	A375_MHC_IP_R2	2	517.7047119140625	2	517.287474	1032.5604	-0.74995	-0.00038794	0.16154	8.3562E-05	-0.58841	-0.00030438	517.2875228740114	77.345	0.55833	78.088	77.807	78.365	0.74293					20	10	3	0	0	0	0.25276	1	29303	29303		34.102	9.4286	1	4169800			49946	5092	36319	36610	48790	48790					0.04541742960282136
SLPIQADSPY	10	Unmodified	_SLPIQADSPY_					0	0	0			REV__ENST00000466870.1_1_3:113784185-113787033:+|nuORF	REV__ENST00000466870.1_1_3:113784185-113787033:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	546.1736450195312	2	545.774396	1089.53424	-0.72858	-0.00039764	-0.33808	-0.00018452	-1.0667	-0.00058216	545.7741817356491	78.851	0.61011	79.595	79.134	79.744	0.74474					15	11	2	0	0	0	0.71118	1	29906	29906		7.2892	0.56607	1	2297300	+		49947	25045	36320	36611	48791	48791					-0.006945710018726459
SLPIQADSPY	10	Unmodified	_SLPIQADSPY_					0	0	0			REV__ENST00000466870.1_1_3:113784185-113787033:+|nuORF	REV__ENST00000466870.1_1_3:113784185-113787033:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	545.774396	1089.53424	-0.72858	-0.00039764	-0.33808	-0.00018452	-1.0667	-0.00058216	545.7741817356491	78.851	0.61011	79.595	79.134	79.744	0.74474	-0.010164	0.00010696	NaN	7.2892	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2297300	+		49948	25045	36320	36611							-0.006945710018726459
SLPKGVVEV	9	Unmodified	_SLPKGVVEV_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-SECPEP	A375_MHC_IP_R1	1	464.6787109375	2	464.279118	926.543683	-0.36395	-0.00016898	0.20967	9.7344E-05	-0.15429	-7.1633E-05	464.2791429529081	52.719	0.91385	52.719	52.387	53.301	0					40	17	3	0	0	0	0.087712	1	18706	18706		75.761	13.188	1	29730000			49949	5792	36321	36612	48792	48792					0.07747242074322003
SLPKGVVEV	9	Unmodified	_SLPKGVVEV_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-SECPEP	A375_MHC_IP_R2	2	463.6947021484375	2	464.279118	926.543683	-0.90874	-0.00042191	0.3055	0.00014184	-0.60324	-0.00028007	464.27915796080305	51.899	0.86356	52.651	52.321	53.184	0.75225					36	16	3	0	0	0	0.074405	1	19566	19566		79.596	10.491	1	39517000			49950	5792	36321	36612	48793	48793					0.07747242074322003
SLPKPDSMSR	10	Unmodified	_SLPKPDSMSR_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-SECPEP	A375_MHC_IP_R2	2	373.64117431640625	3	373.193858	1116.55974	-0.030755	-1.1478E-05	-2.2238	-0.0008299	-2.2545	-0.00084138	373.19260437139724	25.441	0.50889	26.085	25.822	26.33	0.64368					14	9	2	0	0	0	0.91932	1	8516	8516		5.0475	0	1	1857000	+		49951	21972	36322	36613	48794	48794					0.006125802489123089
SLPKQTRSW	9	Unmodified	_SLPKQTRSW_					0	0	0			REV__ENSG00000124203|ENST00000371030|ZNF831	REV__ENSG00000124203|ENST00000371030|ZNF831	MULTI-SECPEP	A375_MHC_IP_R1	1	368.6048889160156	3	368.204974	1101.59309	0.62011	0.00022833	-0.49958	-0.00018395	0.12053	4.438E-05	368.2047747980669	45.376	0.7076	45.376	45.03	45.738	0					17	13	2	0	0	0	0.76187	1	15894	15894		0.86438	0	1	3126200	+		49952	18283	36323	36614	48795	48795					0.046359500831158584
SLPLDFAFP	9	Unmodified	_SLPLDFAFP_					0	0	0			REV__nc|ENSG00000170558|P19022-2|CDH2	REV__nc|ENSG00000170558|P19022-2|CDH2	MULTI-SECPEP	A375_MHC_IP_R1	1	503.1739807128906	2	503.765843	1005.51713	-0.2705	-0.00013627	-2.051	-0.0010332	-2.3215	-0.0011695	503.7647001329717	52.068	0.45848	52.068	51.778	52.237	0					11	8	2	0	0	0	0.50702	1	18500	18500		19.257	1.1106	1	696270	+		49953	21003	36324	36615	48796	48796					0.014595531829968422
SLPLELRLGG	10	Unmodified	_SLPLELRLGG_					0	0	0			REV__ENSG00000181588|ENST00000402693|MEX3D	REV__ENSG00000181588|ENST00000402693|MEX3D	MULTI-SECPEP	A375_MHC_IP_R2	2	528.2156982421875	2	527.816399	1053.61824	-0.44186	-0.00023322	-0.40899	-0.00021587	-0.85085	-0.00044909	527.8161732034645	42.323	0.45953	43.096	42.809	43.268	0.7724					16	8	3	0	0	0	0.90853	1	15754	15754		1.4819	0	1	3127600	+		49954	21658	36325	36616	48797	48797					0.09358004885712035
SLPLHGPLSL	10	Unmodified	_SLPLHGPLSL_					0	0	0		ENST00000400011.6_1_15:30012680-30012737:-|nuORF	ENST00000400011.6_1_15:30012680-30012737:-|nuORF	ENST00000400011.6_1_15:30012680-30012737:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	517.7051391601562	2	517.305667	1032.59678	-0.84652	-0.00043791	-0.59737	-0.00030902	-1.4439	-0.00074693	517.3054335824071	70.875	5.8895	71.609	71.149	77.038	0.73421					312	115	6	0	0	0	0.19329	1	28105	28105		49.933	0.37871	1	4190899999.9999995			49955	11549	36326	36617	48798	48798					0.08178619856994374
SLPLKILPLI	10	Unmodified	_SLPLKILPLI_					0	0	0		nc|ENSG00000113448|Q08499-11|PDE4D;ENST00000514231.1_1_5:59092909-59284421:-|nuORF;ENST00000512069.6_1_5:58854610-59284490:-|nuORF;ENST00000509355.5_1_5:59284313-59481425:-|nuORF;ENST00000509368.6_1_5:59284313-59481385:-|nuORF	nc|ENSG00000113448|Q08499-11|PDE4D	nc|ENSG00000113448|Q08499-11|PDE4D	MULTI-MSMS	A375_MHC_IP_R1	1	554.4227905273438	2	553.88101	1105.74747	-0.55183	-0.00030565	1.8721	0.0010369	1.3203	0.0007313	553.8804130928108	99.164	0.20213	99.164	99.015	99.218	0					5	3	2	0	0	0	0.72378	1	36414	36414		1.6526	0	1	922660			49956	14554	36327	36618	48799	48799					0.1988238651579195
SLPLRWEEKFL	11	Unmodified	_SLPLRWEEKFL_					0	0	0			REV__ENST00000593003.5_1_19:9646979-9648992:-|nuORF	REV__ENST00000593003.5_1_19:9646979-9648992:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	709.547607421875	2	709.395544	1416.77654	-0.7083	-0.00050247	2.222	0.0015763	1.5137	0.0010738	709.8976200086337	105.42	0.50787	106.18	105.87	106.38	0.76308					14	9	2	0	0	0	0.99227	1	39935	39935		0.26902	0	1	1979300	+		49957	26454	36328	36619	48800	48800					0.0848187907411102
SLPNGKPVSV	10	Unmodified	_SLPNGKPVSV_					0	0	0		ENSG00000123892|ENST00000243662|RAB38	ENSG00000123892|ENST00000243662|RAB38	ENSG00000123892|ENST00000243662|RAB38	MULTI-SECPEP	A375_MHC_IP_R1	1	499.68701171875	2	499.287474	996.560395	-0.54183	-0.00027053	-0.15177	-7.5777E-05	-0.6936	-0.00034631	499.28734278616895	36.367	0.51016	36.367	36.133	36.644	0					14	9	2	0	0	0	0.8866	1	12186	12186		14.405	0	1	2254300			49958	3861	36329	36620	48801	48801					0.06197742960284813
SLPNGKPVSV	10	Unmodified	_SLPNGKPVSV_					0	0	0		ENSG00000123892|ENST00000243662|RAB38	ENSG00000123892|ENST00000243662|RAB38	ENSG00000123892|ENST00000243662|RAB38	MULTI-SECPEP	A375_MHC_IP_R2	2	499.98291015625	2	499.287474	996.560395	-0.7557	-0.00037731	0.1571	7.844E-05	-0.5986	-0.00029887	499.2874507353376	35.595	0.5063	36.358	36.081	36.587	0.76338					15	9	2	0	0	0	0.81532	1	12905	12905		19.362	4.5237	1	3483900			49959	3861	36329	36620	48802	48802					0.06197742960284813
SLPNTTPTI	9	Unmodified	_SLPNTTPTI_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4;nc|ENSG00000068878|Q14997-3|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	A375_MHC_IP_R1	1	472.6579895019531	2	472.258382	942.502212	-0.66216	-0.00031271	-0.27341	-0.00012912	-0.93557	-0.00044183	472.2583046311592	66.81	0.61313	66.81	66.478	67.091	0					21	11	2	0	0	0	0.2002	1	24233	24233		37.974	0	1	1770500			49960	1468	36330	36621	48803	48803					0.028660613149895653
SLPNTTPTI	9	Unmodified	_SLPNTTPTI_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4;nc|ENSG00000068878|Q14997-3|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	A375_MHC_IP_R2	2	472.6576232910156	2	472.258382	942.502212	-0.77182	-0.0003645	0.062543	2.9536E-05	-0.70928	-0.00033496	472.2583007539596	65.953	0.61212	66.691	66.425	67.037	0.73811					21	11	2	0	0	0	0.091096	2	25024	25024;25030		52.268	6.2474	1	1731000			49961	1468	36330	36621	48804;48805	48804					0.028660613149895653
SLPPESQQV	9	Unmodified	_SLPPESQQV_					0	0	0		nc|ENSG00000100083|Q9UJY5-4|GGA1;nc|ENSG00000100083|Q9UJY5-3|GGA1;ENSG00000100083|ENST00000343632|GGA1;nc|ENSG00000100083|Q9UJY5-6|GGA1;nc|ENSG00000100083|Q9UJY5-2|GGA1;ENST00000463672.1_1_22:38025503-38026178:+|nuORF	nc|ENSG00000100083|Q9UJY5-4|GGA1	nc|ENSG00000100083|Q9UJY5-4|GGA1	MULTI-MSMS	A375_MHC_IP_R2	2	492.67449951171875	2	492.753464	983.492375	-0.59563	-0.0002935	0.14054	6.9252E-05	-0.45509	-0.00022424	492.75346303553937	39.919	2.1845	40.693	39.914	42.098	0.77451					58	42	2	0	0	0	0.51106	1	15042	15042		19.257	1.1106	1	1574200			49962	2112	36331	36622	48806	48806					-3.126690364751994E-05
SLPPFFPSISP	11	Unmodified	_SLPPFFPSISP_					0	0	0		ENST00000426654.6_1_16:69733899-69734280:+|nuORF	ENST00000426654.6_1_16:69733899-69734280:+|nuORF	ENST00000426654.6_1_16:69733899-69734280:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	397.24365234375	3	396.881497	1187.62266	-0.32422	-0.00012868	-0.94155	-0.00037368	-1.2658	-0.00050236	396.88148354439875	24.009	1.013	24.009	23.787	24.801	0					36	19	4	0	0	0	0.72649	1	6739	6739		9.7643	3.1408	1	10165000			49963	11813	36332	36623	48807	48807					0.036354693086195766
SLPPGLLG	8	Unmodified	_SLPPGLLG_					0	0	0		ENSG00000104518|ENST00000262580|GSDMD;ENST00000528475.1_1_8:144644520-144645071:+|nuORF;ENST00000524846.5_1_8:144644315-144645071:+|nuORF;ENST00000531184.5_1_8:144643499-144645071:+|nuORF	ENSG00000104518|ENST00000262580|GSDMD;REV__ENSG00000174327|ENST00000308027|SLC16A13	REV__ENSG00000174327|ENST00000308027|SLC16A13	MULTI-SECPEP	A375_MHC_IP_R2	2	752.7927856445312	1	753.450517	752.44324	-0.88882	-0.00066968	0.32195	0.00024258	-0.56686	-0.0004271	753.450631553315	77.702	1.021	78.445	78.01	79.031	0.74293					41	19	3	0	0	0	0.972	1	29581	29581		4.756	0	1	16171000			49964	2517;21278	36333	36624	48808	48808					0.05711629811332841
SLPPHQPRF	9	Unmodified	_SLPPHQPRF_					0	0	0			REV__ENST00000451977.1_1_2:131450309-131450510:-|nuORF	REV__ENST00000451977.1_1_2:131450309-131450510:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	539.1539916992188	2	539.793258	1077.57196	-1.0431	-0.00056306	-1.4304	-0.0007721	-2.4735	-0.0013352	539.792836980978	62.126	0.30388	62.869	62.724	63.028	0.74263					7	5	2	0	0	0	0.71541	1	23514	23514		11.64	5.9084	1	556570	+		49965	24897	36334	36625	48809	48809					0.03627984774266224
SLPPHQPRF	9	Unmodified	_SLPPHQPRF_					0	0	0			REV__ENST00000451977.1_1_2:131450309-131450510:-|nuORF	REV__ENST00000451977.1_1_2:131450309-131450510:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	539.793258	1077.57196	-0.56128	-0.00030298	-1.6941	-0.00091448	-2.2554	-0.0012175	539.7927303035431	62.983	0.66538	62.983	62.609	63.274	0	0.056941	-0.00014197	NaN	11.64	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1062000	+		49966	24897	36334	36625							0.03627984774266224
SLPPLPRKV	9	Unmodified	_SLPPLPRKV_					0	0	0		ENSG00000118960|ENST00000304031|HS1BP3	ENSG00000118960|ENST00000304031|HS1BP3	ENSG00000118960|ENST00000304031|HS1BP3	MULTI-SECPEP	A375_MHC_IP_R1	1	504.1690368652344	2	503.824027	1005.6335	-0.3109	-0.00015664	-0.12518	-6.3068E-05	-0.43608	-0.00021971	503.82389147001265	42.222	1.0641	42.222	41.777	42.841	0					47	20	3	0	0	0	0.63327	1	14660	14660		18.146	8.7632	1	4927000			49967	3564	36335	36626	48810	48810					0.13090916473561265
SLPPLPRKV	9	Unmodified	_SLPPLPRKV_					0	0	0		ENSG00000118960|ENST00000304031|HS1BP3	ENSG00000118960|ENST00000304031|HS1BP3	ENSG00000118960|ENST00000304031|HS1BP3	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1689147949219	2	503.824027	1005.6335	-0.82509	-0.0004157	0.25272	0.00012733	-0.57237	-0.00028837	503.82405886526	41.349	1.0672	42.124	41.692	42.759	0.77451					41	20	3	0	0	0	0.67483	1	15388	15388		20.454	9.6297	1	3854400			49968	3564	36335	36626	48811	48811					0.13090916473561265
SLPPPKGF	8	Unmodified	_SLPPPKGF_					0	0	0		ENSG00000276581|ENST00000437823|SPATA31A5;ENSG00000276040|ENST00000619167|SPATA31A7;ENSG00000275969|ENST00000428649|SPATA31A3	ENSG00000276581|ENST00000437823|SPATA31A5	ENSG00000276581|ENST00000437823|SPATA31A5	MULTI-SECPEP	A375_MHC_IP_R2	2	421.9505310058594	2	421.742171	841.469789	-0.14229	-6.0008E-05	-0.20618	-8.6956E-05	-0.34847	-0.00014696	421.7419609377127	32.248	0.40807	32.985	32.857	33.265	0.73692					12	7	2	0	0	0	0.86765	1	11486	11486		24.674	0	1	2732600			49969	10015	36336	36627	48812	48812					0.04271318702660665
SLPPPLQQEEA	11	Unmodified	_SLPPPLQQEEA_					0	0	0			REV__ENSG00000133030|ENST00000651222|MPRIP	REV__ENSG00000133030|ENST00000651222|MPRIP	MULTI-SECPEP	A375_MHC_IP_R1	1	403.6432800292969	3	403.543432	1207.60847	-0.57493	-0.00023201	0.36421	0.00014698	-0.21071	-8.5032E-05	403.5435517402157	33	0.40473	33	32.785	33.19	0					18	7	3	0	0	0	0.98748	1	10790	10790		2.4348	2.4348	1	6333800	+		49970	18701	36337	36628	48813	48813					0.012967720896767787
SLPPQPAFGPD	11	Unmodified	_SLPPQPAFGPD_					0	0	0			REV__ENST00000518192.5_1_8:29953188-29953320:+|nuORF	REV__ENST00000518192.5_1_8:29953188-29953320:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	375.6268310546875	3	375.857351	1124.55022	0.16061	6.0368E-05	-1.1786	-0.00044298	-1.018	-0.00038261	376.1910869578881	25.726	0.50627	25.726	25.511	26.017	0					13	9	2	0	0	0	0.98748	1	7686	7686		4.4062	2.6639	1	1059800	+		49971	25674	36338	36629	48814	48814					-0.007068647649475679
SLPPTPDMNRA	11	Unmodified	_SLPPTPDMNRA_					0	0	0		ENST00000392563.5_1_17:73314377-73314581:-|nuORF	ENST00000392563.5_1_17:73314377-73314581:-|nuORF	ENST00000392563.5_1_17:73314377-73314581:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	400.6168518066406	3	400.201012	1197.58121	-0.53398	-0.0002137	-0.31908	-0.0001277	-0.85306	-0.0003414	400.2007260454113	37.349	0.51015	38.12	37.816	38.327	0.7709					16	9	3	0	0	0	0.99018	1	13668	13668		6.2344	4.4921	1	1440800			49972	11422	36339	36630	48815	48815					-0.009680347223593344
SLPPTPDMNRA	11	Unmodified	_SLPPTPDMNRA_					0	0	0		ENST00000392563.5_1_17:73314377-73314581:-|nuORF	ENST00000392563.5_1_17:73314377-73314581:-|nuORF	ENST00000392563.5_1_17:73314377-73314581:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	400.201012	1197.58121	-0.63239	-0.00025308	-0.20265	-8.1099E-05	-0.83504	-0.00033418	400.2008250980448	38.209	0.51099	38.209	37.964	38.475	0	0.044634	0.00010569	NaN	6.2344	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2227000			49973	11422	36339	36630							-0.009680347223593344
SLPQCTMVF	9	Unmodified	_SLPQCTMVF_					0	0	0			REV__ENST00000467004.5_1_7:6841110-6844713:-|nuORF	REV__ENST00000467004.5_1_7:6841110-6844713:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	514.1441040039062	2	513.243363	1024.47217	-0.64603	-0.00033157	-0.40935	-0.0002101	-1.0554	-0.00054167	513.2428694852237	84.595	0.76222	85.331	85.018	85.78	0.73601					29	14	3	0	0	0	0.55818	1	32178	32178		16.942	0	1	2663000	+		49974	25049	36340	36631	48816	48816					-0.03908336946210511
SLPQGRQMW	9	Unmodified	_SLPQGRQMW_					0	0	0			REV__nc|ENSG00000211899|P01871-1|IGHM	REV__nc|ENSG00000211899|P01871-1|IGHM	MULTI-MSMS	A375_MHC_IP_R1	1	551.696533203125	2	551.776751	1101.53895	-0.69061	-0.00038107	0.89994	0.00049656	0.20932	0.0001155	552.2790027991923	80.452	0.20287	80.452	80.289	80.492	0					5	3	2	0	0	0	0.63811	1	29358	29358		12.532	0	1	891860	+		49975	27484	36341	36632	48817	48817					-0.0077596534008534945
SLPQGSGPEQS	11	Unmodified	_SLPQGSGPEQS_					0	0	0			REV__UBQLN3|p.P397S|1|0.43|ENSG00000175520|chr11:5508370-5508370|G/A|missense_variant	REV__UBQLN3|p.P397S|1|0.43|ENSG00000175520|chr11:5508370-5508370|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	543.713134765625	2	543.756735	1085.49892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.96	1	108.71	108.21	109.21	0.75436								0	0	0	0.15541	1	40776	40776		17.113	0	1		+		49976	28940	36342	36633	48818	48818					-0.04041233529665078
SLPQNPLSGLI	11	Unmodified	_SLPQNPLSGLI_					0	0	0			REV__ENSG00000130307|ENST00000252597|USHBP1	REV__ENSG00000130307|ENST00000252597|USHBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	379.6082763671875	3	380.220401	1137.63937	0.095831	3.6437E-05	0.031257	1.1884E-05	0.12709	4.8321E-05	380.220253618868	42.826	0.35477	43.598	43.369	43.724	0.7724					10	6	2	0	0	0	0.92455	1	15856	15856		3.8459	0	1	1470200	+		49977	18531	36343	36634	48819	48819					0.07605970194549627
SLPQRFKV	8	Unmodified	_SLPQRFKV_					0	0	0		ENST00000569299.1_1_16:66967504-66968009:-|nuORF	ENST00000569299.1_1_16:66967504-66968009:-|nuORF	ENST00000569299.1_1_16:66967504-66968009:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	488.46929931640625	2	487.792727	973.5709	-0.10303	-5.0258E-05	0.60878	0.00029696	0.50575	0.0002467	487.79283318243296	49.905	0.25627	49.905	49.793	50.049	0					6	4	2	0	0	0	0.972	1	17708	17708		1.8442	0	1	458640			49978	13590	36344	36635	48820	48820					0.08305770405377189
SLPQRFKV	8	Unmodified	_SLPQRFKV_					0	0	0		ENST00000569299.1_1_16:66967504-66968009:-|nuORF	ENST00000569299.1_1_16:66967504-66968009:-|nuORF	ENST00000569299.1_1_16:66967504-66968009:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	488.4692687988281	2	487.792727	973.5709	-0.52566	-0.00025641	0.86082	0.0004199	0.33516	0.00016349	487.7930860081593	45.979	0.65512	46.745	46.453	47.108	0.76519					16	12	2	0	0	0	0.95423	1	17224	17224		12.532	0	1	1367300			49979	13590	36344	36635	48821	48821					0.08305770405377189
SLPQWLREL	9	Unmodified	_SLPQWLREL_					0	0	0			REV__ENST00000293725.9_1_19:12433494-12444388:-|nuORF	REV__ENST00000293725.9_1_19:12433494-12444388:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	381.95147705078125	3	381.216991	1140.62914	0.27017	0.00010299	1.023	0.00038997	1.2931	0.00049296	381.5515548023872	58.811	0.50922	58.811	58.481	58.99	0					15	9	2	0	0	0	0.71358	1	21174	21174		5.7834	0.38072	1	2056200	+		49980	23373	36345	36636	48822	48822					0.06445407260002867
SLPQWLREL	9	Unmodified	_SLPQWLREL_					0	0	0			REV__ENST00000293725.9_1_19:12433494-12444388:-|nuORF	REV__ENST00000293725.9_1_19:12433494-12444388:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	381.216991	1140.62914	0.27017	0.00010299	1.023	0.00038997	1.2931	0.00049296	381.5515548023872	58.811	0.50922	58.811	58.481	58.99	0	0	0	NaN	5.7834	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2056200	+		49981	23373	36345	36636							0.06445407260002867
SLPRATYV	8	Unmodified	_SLPRATYV_					0	0	0		ENST00000331434.6_1_8:146277861-146278117:+|nuORF;ENST00000524395.5_1_8:146277868-146278117:+|nuORF	ENST00000331434.6_1_8:146277861-146278117:+|nuORF	ENST00000331434.6_1_8:146277861-146278117:+|nuORF	MSMS	A375_MHC_IP_R1	1	453.7434997558594	2	453.75581	905.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.646	1	83.646	83.146	84.146	0								0	0	0	0.16876	1	30612	30612		28.487	6.7402	1				49982	10770	36346	36637	48823	48823					0.04053802243026894
SLPRDRQALVK	11	Unmodified	_SLPRDRQALVK_					0	0	0		ENST00000511161.5_1_6:41904922-42016364:-|nuORF;ENST00000513956.5_1_6:41904284-42016364:-|nuORF;ENST00000505672.5_1_6:41904922-42016364:-|nuORF;ENST00000505884.5_1_6:41904922-41997824:-|nuORF;ENST00000510058.1_1_6:41904922-41909441:-|nuORF;nc|ENSG00000112576|P30281-2|CCND3;nc|ENSG00000112576|P30281-3|CCND3;ENSG00000112576|ENST00000372991|CCND3	ENST00000511161.5_1_6:41904922-42016364:-|nuORF	ENST00000511161.5_1_6:41904922-42016364:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	428.6574401855469	3	428.257849	1281.75172	-0.22678	-9.7122E-05	-0.77214	-0.00033067	-0.99892	-0.0004278	428.25747819029937	129.81	1.5169	130.03	129.19	130.7	0.21419					68	29	3	0	0	0	0.73795	1	51121	51121		1.3296	0	1	10623000			49983	12844	36347	36638	48824	48824					0.12211243991373522
SLPRHGCFI	9	Unmodified	_SLPRHGCFI_					0	0	0			REV__ENST00000477973.3_2_3:72427297-72427510:-|nuORF	REV__ENST00000477973.3_2_3:72427297-72427510:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	515.1736450195312	2	515.268561	1028.52257	-0.59039	-0.00030421	-2.6485	-0.0013647	-3.2389	-0.0016689	515.769128364488	99.099	0.76293	99.859	99.657	100.42	0.75977					20	14	2	0	0	0	0.50702	1	37549	37549		19.257	7.6167	1	1515400	+		49984	25204	36348	36639	48825	48825					0.009449534938312354
SLPRKTVP	8	Unmodified	_SLPRKTVP_					0	0	0		ENSG00000165091|ENST00000297784|TMC1	ENSG00000165091|ENST00000297784|TMC1	ENSG00000165091|ENST00000297784|TMC1	MSMS	A375_MHC_IP_R2	2	449.6610107421875	2	449.279452	896.544351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.072	1	54.823	54.323	55.323	0.75105								0	0	0	0.16876	1	20411	20411		28.487	0	1				49985	6910	36349	36640	48826	48826					0.09194081514033314
SLPRLLRHY	9	Unmodified	_SLPRLLRHY_					0	0	0			REV__ENSG00000182791|ENST00000333861|CCDC87	REV__ENSG00000182791|ENST00000333861|CCDC87	MULTI-SECPEP	A375_MHC_IP_R1	1	578.1822509765625	2	577.843282	1153.67201	0.072143	4.1687E-05	-0.64089	-0.00037033	-0.56875	-0.00032865	577.8430131576301	48.046	0.35294	48.046	47.87	48.223	0					11	6	3	0	0	0	0.76827	1	16879	16879		3.5965	1.5367	1	2688100	+		49986	21709	36350	36641	48827	48827					0.10132222108063615
SLPRLLRHY	9	Unmodified	_SLPRLLRHY_					0	0	0			REV__ENSG00000182791|ENST00000333861|CCDC87	REV__ENSG00000182791|ENST00000333861|CCDC87	MULTI-SECPEP	A375_MHC_IP_R2	2	578.1826782226562	2	577.843282	1153.67201	-0.0019248	-1.1122E-06	-0.47219	-0.00027285	-0.47411	-0.00027396	577.8433105519922	47.131	0.4082	47.893	47.715	48.123	0.76128					11	7	3	0	0	0	0.78348	1	17701	17701		1.8442	0	1	2697600	+		49987	21709	36350	36641	48828	48828					0.10132222108063615
SLPRRLVLRKA	11	Unmodified	_SLPRRLVLRKA_					0	0	0			REV__nc|ENSG00000241370|Q9H633-4|RPP21	REV__nc|ENSG00000241370|Q9H633-4|RPP21	MULTI-MSMS	A375_MHC_IP_R1	1	655.4300537109375	2	654.932963	1307.85137	-0.63724	-0.00041735	-2.7854	-0.0018242	-3.4226	-0.0022416	654.9316535339957	86.277	0.30522	86.277	86.121	86.426	0					9	5	2	0	0	0	0.73795	1	31622	31622		1.3295	0	1	2044200	+		49988	27521	36351	36642	48829	48829					0.2097610639600589
SLPRRLVLRKA	11	Unmodified	_SLPRRLVLRKA_					0	0	0			REV__nc|ENSG00000241370|Q9H633-4|RPP21	REV__nc|ENSG00000241370|Q9H633-4|RPP21	MULTI-SECPEP	A375_MHC_IP_R2	2	654.1881713867188	2	654.932963	1307.85137	-1.0496	-0.00068743	-3.6504	-0.0023908	-4.7	-0.0030782	654.9310252874518	97.059	0.30549	97.815	97.72	98.025	0.75586					8	5	2	0	0	0	1.0008	1	36891	36891		0.30703	0.30703	1	1202900	+		49989	27521	36351	36642	48830	48830					0.2097610639600589
SLPRRLVLRKA	11	Unmodified	_SLPRRLVLRKA_					0	0	0			REV__nc|ENSG00000241370|Q9H633-4|RPP21	REV__nc|ENSG00000241370|Q9H633-4|RPP21	MULTI-MATCH	A375_MHC_IP_R1	1		2	654.932963	1307.85137	-0.37321	-0.00024442	-3.5685	-0.0023371	-3.9417	-0.0025816	655.4323817898144	97.974	0.25588	97.974	97.845	98.101	0	0.079368	4.2053E-05	NaN	0.30703	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1363600	+		49990	27521	36351	36642							0.2097610639600589
SLPRRPFVF	9	Unmodified	_SLPRRPFVF_					0	0	0			REV__ENST00000414141.1_1_2:70351197-70351452:-|nuORF	REV__ENST00000414141.1_1_2:70351197-70351452:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	373.37152099609375	3	373.553826	1117.63965	0.0080032	2.9896E-06	0.059643	2.228E-05	0.067646	2.527E-05	373.5537497934246	26.246	0.45658	26.246	26.068	26.524	0					12	8	2	0	0	0	0.67483	1	7785	7785		6.6304	0	1	2924400	+		49991	24502	36352	36643	48831	48831					0.08553434705072505
SLPSPSFRAY	10	Unmodified	_SLPSPSFRAY_					0	0	0			REV__ENSG00000152256|ENST00000282077|PDK1	REV__ENSG00000152256|ENST00000282077|PDK1	MULTI-SECPEP	A375_MHC_IP_R1	1	374.91387939453125	3	375.529346	1123.56621	0.231	8.6746E-05	-0.22653	-8.5069E-05	0.0044669	1.6774E-06	375.52919848216936	33.126	0.30204	33.126	32.989	33.291	0					8	5	2	0	0	0	0.92514	1	10755	10755		4.7159	0.52642	1	1256200	+		49992	19798	36353	36644	48832	48832					0.009368414719347129
SLPSSLYIV	9	Unmodified	_SLPSSLYIV_					0	0	0			REV__ENST00000396884.6_1_22:38368385-38368778:-|nuORF	REV__ENST00000396884.6_1_22:38368385-38368778:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	978.950439453125	1	978.550625	977.543348	-0.09374	-9.173E-05	0.038034	3.7218E-05	-0.055706	-5.4512E-05	978.5505491567654	132.36	0.55963	132.36	132.23	132.79	0					32	10	5	0	0	0	0.28475	1	51184	51184		32.305	0	1	250720000	+		49993	24348	36354	36645	48833	48833					0.05367822354469354
SLPSTEAHLK	10	Unmodified	_SLPSTEAHLK_					0	0	0		ENST00000560494.1_1_15:59171947-59172195:-|nuORF	ENST00000560494.1_1_15:59171947-59172195:-|nuORF	ENST00000560494.1_1_15:59171947-59172195:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	361.93292236328125	3	361.532868	1081.57677	-0.10302	-3.7244E-05	-0.022805	-8.2448E-06	-0.12582	-4.5489E-05	361.5329265526613	39.723	0.5064	39.723	39.441	39.948	0					13	9	2	0	0	0	0.8528	1	13658	13658		10.315	6.1986	1	2604900			49994	13497	36355	36646	48834	48834					0.03924824126352178
SLPSTEAHLK	10	Unmodified	_SLPSTEAHLK_					0	0	0		ENST00000560494.1_1_15:59171947-59172195:-|nuORF	ENST00000560494.1_1_15:59171947-59172195:-|nuORF	ENST00000560494.1_1_15:59171947-59172195:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	361.532868	1081.57677	-0.43803	-0.00015836	-0.19108	-6.9083E-05	-0.62912	-0.00022745	361.5328564008894	38.91	0.56387	39.684	39.401	39.965	0.77451	-0.019053	-0.00011404	NaN	10.315	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1421600			49995	13497	36355	36646							0.03924824126352178
SLPSVFFRNHI	11	Unmodified	_SLPSVFFRNHI_					0	0	0		ENST00000491729.1_1_21:47608607-47611005:-|nuORF	ENST00000491729.1_1_21:47608607-47611005:-|nuORF	ENST00000491729.1_1_21:47608607-47611005:-|nuORF	MSMS	A375_MHC_IP_R1	1	439.64361572265625	3	439.575178	1315.70371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.153	1	35.153	34.653	35.653	0								0	0	0	0.16179	1	11667	11667		4.7159	0.83959	1				49996	12664	36356	36647	48835	48835					0.05848170071385539
SLPTGYPV	8	Unmodified	_SLPTGYPV_					0	0	0			REV__BCHE|p.P387Sfs*5|1|0.16|ENSG00000114200|chr3:165829875-165829876|-/A|frameshift_variant	REV__BCHE|p.P387Sfs*5|1|0.16|ENSG00000114200|chr3:165829875-165829876|-/A|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	416.4306335449219	2	417.223811	832.433069	-0.10826	-4.517E-05	1.3368	0.00055774	1.2285	0.00051257	417.2226762843092	40.311	0.40543	41.086	40.879	41.285	0.77451					17	7	3	0	0	0	0.972	1	14962	14962		9.3474	0	1	2406200	+		49997	15500	36357	36648	48836	48836					0.01015022086096451
SLPTQLKDNFN	11	Unmodified	_SLPTQLKDNFN_					0	0	0		nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	nc|ENSG00000189056|P78509-3|RELN	nc|ENSG00000189056|P78509-3|RELN	MULTI-SECPEP	A375_MHC_IP_R2	2	639.056396484375	2	638.830234	1275.64592	-0.82921	-0.00052972	-0.52397	-0.00033473	-1.3532	-0.00086445	638.8298145859924	96.473	0.70842	97.229	96.911	97.62	0.75586					20	13	3	0	0	0	0.97182	1	36684	36684		13.615	0	1	1422700			49998	8956	36358	36649	48837	48837					0.019118633552807296
SLPTRRTLHP	10	Unmodified	_SLPTRRTLHP_					0	0	0		ENSG00000188305|ENST00000342063|PEAK3	ENSG00000188305|ENST00000342063|PEAK3	ENSG00000188305|ENST00000342063|PEAK3	MULTI-MSMS	A375_MHC_IP_R2	2	589.7431640625	2	589.343646	1176.67274	-0.51948	-0.00030615	-1.0973	-0.00064669	-1.6168	-0.00095284	589.342957501053	125.91	0.60857	126.2	125.87	126.48	0.2951					27	11	3	0	0	0	0.71944	1	49162	49162		3.5965	0.60125	1	12049000			49999	8898	36359	36650	48838	48838					0.09147016757151505
SLPTTMGVVA	10	Unmodified	_SLPTTMGVVA_					0	0	0		nc|ENSG00000081307|Q9GZZ9-2|UBA5;ENSG00000081307|ENST00000356232|UBA5	nc|ENSG00000081307|Q9GZZ9-2|UBA5	nc|ENSG00000081307|Q9GZZ9-2|UBA5	MULTI-SECPEP	A375_MHC_IP_R2	2	487.6997375488281	2	488.26261	974.510668	-0.50511	-0.00024663	-0.34275	-0.00016735	-0.84786	-0.00041398	488.2623494164178	69.99	0.50888	70.725	70.488	70.997	0.73421					12	9	2	0	0	0	0.78945	1	26567	26567		19.257	0	1	766540			50000	1735	36360	36651	48839	48839					0.022392919599838024
SLPTVMWI	8	Unmodified	_SLPTVMWI_					0	0	0			REV__nc|ENSG00000144847|Q5DX21-3|IGSF11	REV__nc|ENSG00000144847|Q5DX21-3|IGSF11	MSMS	A375_MHC_IP_R1	1	473.65753173828125	2	473.756964	945.499375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.4	1	102.4	101.9	102.9	0								0	0	0	0.16876	1	37634	37634		26.341	4.5946	1		+		50001	19450	36361	36652	48840	48840					0.024445146564858078
SLPVEVQEV	9	Unmodified	_SLPVEVQEV_					0	0	0		ENSG00000141425|ENST00000399022|RPRD1A;nc|ENSG00000141425|Q96P16-3|RPRD1A	ENSG00000141425|ENST00000399022|RPRD1A	ENSG00000141425|ENST00000399022|RPRD1A	MULTI-SECPEP	A375_MHC_IP_R1	1	500.6712951660156	2	500.27149	998.528426	-0.43222	-0.00021623	2.1492	0.0010752	1.717	0.00085895	500.27133535386497	81.256	0.60921	81.256	80.897	81.506	0					25	11	3	0	0	0	0.070665	1	29688	29688		78.728	40.754	1	4439700			50002	5238	36362	36653	48841	48841					0.02910330486474777
SLPVEVQEV	9	Unmodified	_SLPVEVQEV_					0	0	0		ENSG00000141425|ENST00000399022|RPRD1A;nc|ENSG00000141425|Q96P16-3|RPRD1A	ENSG00000141425|ENST00000399022|RPRD1A	ENSG00000141425|ENST00000399022|RPRD1A	MULTI-MSMS	A375_MHC_IP_R2	2	500.6712951660156	2	500.27149	998.528426	-0.60673	-0.00030353	1.2252	0.00061292	0.61845	0.00030939	500.27155656733134	80.472	0.96511	81.216	80.759	81.724	0.74473					34	18	4	0	0	0	0.0096397	1	30566	30566		126.57	58.485	1	3322200			50003	5238	36362	36653	48842	48842					0.02910330486474777
SLPVGRKPKY	10	Unmodified	_SLPVGRKPKY_					0	0	0			REV__DPYD|p.E1012K|2|0.23|ENSG00000188641|chr1:97079020-97079020|C/T|missense_variant	REV__DPYD|p.E1012K|2|0.23|ENSG00000188641|chr1:97079020-97079020|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	382.63238525390625	3	382.232752	1143.67643	-0.48438	-0.00018515	-0.23824	-9.1063E-05	-0.72262	-0.00027621	382.232547183835	24.796	0.71291	25.439	25.263	25.976	0.64368					20	13	2	0	0	0	0.7086	1	8213	8213		8.4443	0.83535	1	8844600	+		50004	16033	36363	36654	48843	48843					0.11033686530981868
SLPVKVKNDF	10	Unmodified	_SLPVKVKNDF_					0	0	0			REV__ENST00000568777.5_1_15:72638642-72646100:-|nuORF	REV__ENST00000568777.5_1_15:72638642-72646100:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	574.8676147460938	2	573.829506	1145.64446	-0.18198	-0.00010443	-0.21957	-0.00012599	-0.40155	-0.00023042	574.3311311580894	101.93	0.508	102.69	102.36	102.87	0.76428					16	9	3	0	0	0	0.70329	1	38585	38585		10.824	0	1	2121900	+		50005	26264	36364	36655	48844	48844					0.07746274057171831
SLPVLAQLRN	10	Unmodified	_SLPVLAQLRN_					0	0	0			REV__ENST00000307658.11_2_19:57922663-57924969:+|nuORF	REV__ENST00000307658.11_2_19:57922663-57924969:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	371.2926330566406	3	370.892507	1109.65569	-0.27946	-0.00010365	0.71263	0.00026431	0.43317	0.00016066	370.8927130342175	36.994	0.45559	37.765	37.513	37.968	0.7709					18	8	3	0	0	0	0.94941	1	13535	13535		0.56317	0	1	2489100	+		50006	23476	36365	36656	48845	48845					0.10525096151309299
SLPWERRVRRR	11	Unmodified	_SLPWERRVRRR_					0	0	0		ENST00000480844.2_1_2:74734258-74734516:-|nuORF	ENST00000480844.2_1_2:74734258-74734516:-|nuORF	ENST00000480844.2_1_2:74734258-74734516:-|nuORF	MSMS	A375_MHC_IP_R2	2	755.9443359375	2	755.944924	1509.8753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.124	1	76.865	76.365	77.365	0.74052								0	0	0	0.16334	1	28899	28899		1.3295	0.36726	1				50007	12503	36366	36657	48846	48846					0.14075339882379012
SLQAEEHQLL	10	Unmodified	_SLQAEEHQLL_					0	0	0		ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	MULTI-SECPEP	A375_MHC_IP_R2	2	390.27117919921875	3	389.87166	1166.59315	-0.59147	-0.0002306	-0.62316	-0.00024295	-1.2146	-0.00047355	389.87134136796044	25	0.76399	25.644	25.465	26.229	0.64368					24	14	2	0	0	0	0.83355	1	8305	8305		7.4771	1.2427	1	12606000			50008	4567	36367	36658	48847	48847					0.01651905292465017
SLQALPVTRL	10	Unmodified	_SLQALPVTRL_					0	0	0		ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1	ENSG00000135476|ENST00000257934|ESPL1	ENSG00000135476|ENST00000257934|ESPL1	MULTI-SECPEP	A375_MHC_IP_R1	1	366.60980224609375	3	366.560758	1096.66044	0.32219	0.0001181	-0.52284	-0.00019165	-0.20065	-7.355E-05	366.8947019978422	47.442	0.80933	47.442	47.211	48.02	0					22	15	2	0	0	0	0.92445	1	16700	16700		7.0371	0	1	1884100			50009	4690	36368	36659	48848	48848					0.1159798029407284
SLQASRSIW	9	Unmodified	_SLQASRSIW_					0	0	0		TBC1D3L|p.C534Afs*49|1|0.37|ENSG00000274512|chr17:37978520-37978520|A/-|frameshift_variant	TBC1D3L|p.C534Afs*49|1|0.37|ENSG00000274512|chr17:37978520-37978520|A/-|frameshift_variant	TBC1D3L|p.C534Afs*49|1|0.37|ENSG00000274512|chr17:37978520-37978520|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6821899414062	2	524.282723	1046.55089	-0.78973	-0.00041404	0.78271	0.00041036	-0.0070188	-3.6798E-06	524.2827370860276	67.218	0.61313	67.218	66.938	67.552	0					24	11	3	0	0	0	0.4261	1	24340	24340		30.637	0	1	5658800			50010	29306	36369	36660	48849	48849					0.02947974674748366
SLQCSKEILSF	11	Unmodified	_SLQCSKEILSF_					0	0	0			REV__ENSG00000144452|ENST00000272895|ABCA12	REV__ENSG00000144452|ENST00000272895|ABCA12	MULTI-SECPEP	A375_MHC_IP_R1	1	419.28436279296875	3	418.884801	1253.63257	-0.10872	-4.5541E-05	-0.37648	-0.0001577	-0.4852	-0.00020324	418.8845927741051	30.817	0.55655	30.817	30.553	31.109	0					19	10	3	0	0	0	0.99883	1	9860	9860		2.6312	0	1	3341500	+		50011	19424	36370	36661	48850	48850					0.015902892516805878
SLQDEIQRV	9	Unmodified	_SLQDEIQRV_					0	0	0		ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-SECPEP	A375_MHC_IP_R1	1	544.2347412109375	2	544.290745	1086.56694	-0.5247	-0.00028559	-0.084953	-4.6239E-05	-0.60965	-0.00033183	544.2906867595843	57.238	0.86616	57.238	56.956	57.822	0					44	16	4	0	0	0	0.0018556	1	20507	20507		160.69	64.579	1	27430000			50012	1371	36371	36662	48851	48851					0.027116361209891693
SLQDIDSRL	9	Unmodified	_SLQDIDSRL_					0	0	0		ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	MSMS	A375_MHC_IP_R1	1	523.6875610351562	2	523.77747	1045.54039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.325	1	59.325	58.825	59.825	0								0	0	0	0.14357	1	21337	21337		28.495	0.86571	1				50013	8523	36372	36663	48852	48852					0.019439472296653548
SLQDKESV	8	Unmodified	_SLQDKESV_					0	0	0		ENSG00000048707|ENST00000620676|VPS13D;nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENST00000460333.5_1_1:12359354-12409038:+|nuORF	ENSG00000048707|ENST00000620676|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	MULTI-MSMS	A375_MHC_IP_R2	2	905.8561401367188	1	905.457453	904.450176	-0.79358	-0.00071855	-0.38829	-0.00035158	-1.1819	-0.0010701	905.4571103403	59.072	0.70885	59.819	59.489	60.198	0.74714					28	13	3	0	0	0	0.57209	1	22454	22454		46.021	0	1	13106000			50014	1216	36373	36664	48853	48853					-0.005871020987569864
SLQDKESV	8	Unmodified	_SLQDKESV_					0	0	0		ENSG00000048707|ENST00000620676|VPS13D;nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENST00000460333.5_1_1:12359354-12409038:+|nuORF	ENSG00000048707|ENST00000620676|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	MULTI-MATCH	A375_MHC_IP_R1	1		1	905.457453	904.450176	-0.12437	-0.00011261	-0.22351	-0.00020238	-0.34788	-0.00031499	905.4571825098736	59.777	0.81329	59.777	59.397	60.21	0	-0.020884	7.2057E-05	NaN	46.021	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14900000			50015	1216	36373	36664							-0.005871020987569864
SLQDLIEKV	9	Unmodified	_SLQDLIEKV_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-SECPEP	A375_MHC_IP_R1	1	522.1908569335938	2	522.800414	1043.58628	-0.46802	-0.00024468	-0.48243	-0.00025221	-0.95045	-0.0004969	522.800195799029	100.59	0.45649	100.59	100.38	100.84	0					15	8	3	0	0	0	0.53098	1	37018	37018		27.223	1.2025	1	1967600			50016	5020	36374	36665	48854	48854					0.06622592411895312
SLQDLIEKV	9	Unmodified	_SLQDLIEKV_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-SECPEP	A375_MHC_IP_R2	2	522.19091796875	2	522.800414	1043.58628	-0.30964	-0.00016188	-0.68306	-0.00035711	-0.9927	-0.00051898	522.8001624688497	99.718	0.40592	100.48	100.27	100.68	0.76278					15	7	3	0	0	0	0.22619	1	37814	37814		59.052	3.8178	1	1712400			50017	5020	36374	36665	48855	48855					0.06622592411895312
SLQDVIFKSAF	11	Unmodified	_SLQDVIFKSAF_					0	0	0		ENSG00000087502|ENST00000360150|ERGIC2	ENSG00000087502|ENST00000360150|ERGIC2	ENSG00000087502|ENST00000360150|ERGIC2	MULTI-MSMS	A375_MHC_IP_R2	2	419.6301574707031	3	418.895806	1253.66559	-0.12726	-5.3309E-05	0.99919	0.00041856	0.87193	0.00036525	418.8956612674998	40.187	0.45647	40.962	40.777	41.234	0.77451					33	8	5	0	0	0	0.45155	1	14866	14866		23.016	0	1	23300000			50018	1877	36375	36666	48856	48856					0.048902393660455346
SLQEASPRL	9	Unmodified	_SLQEASPRL_					0	0	0		nc|ENSG00000182872|P98175-5|RBM10	nc|ENSG00000182872|P98175-5|RBM10	nc|ENSG00000182872|P98175-5|RBM10	MULTI-SECPEP	A375_MHC_IP_R1	1	501.1459655761719	2	500.774731	999.534909	-0.16236	-8.1305E-05	-0.17198	-8.6123E-05	-0.33434	-0.00016743	500.77479997511716	38.818	0.76562	38.818	38.319	39.085	0					28	14	3	0	0	0	0.74875	1	13081	13081		15.248	1.3424	1	2391700			50019	14805	36376	36667	48857	48857					0.03512268437839339
SLQEEIAFL	9	Unmodified	_SLQEEIAFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R1	1	525.6783447265625	2	525.279315	1048.54408	-0.017602	-9.2458E-06	-0.68344	-0.000359	-0.70104	-0.00036824	525.2789180326503	126.94	0.76002	126.94	126.71	127.47	0					35	14	4	0	0	0	0.0096896	1	48536	48536		110.67	29.062	1	146260000			50020	1093	36377	36668	48858	48858					0.02174617003538515
SLQEEIAFL	9	Unmodified	_SLQEEIAFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R1	1	1051.58935546875	1	1049.55135	1048.54408	0.61411	0.00064454	-0.29881	-0.00031362	0.3153	0.00033092	1049.5508508261062	126.94	0.55806	126.94	126.71	127.27	0					22	10	3	0	0	0	0.084766	1	48561	48561		53.404	3.471	1	249620000			50021	1093	36377	36668	48859	48859					0.02174617003538515
SLQEEIAFL	9	Unmodified	_SLQEEIAFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R2	2	525.679931640625	2	525.279315	1048.54408	-0.45181	-0.00023733	-0.65803	-0.00034565	-1.1098	-0.00058298	525.2789144797862	126.51	0.8577	126.81	126.58	127.44	0.2951					43	16	4	0	0	0	0.0096896	1	49477	49477		110.67	35.746	1	232180000			50022	1093	36377	36668	48860	48860					0.02174617003538515
SLQEEIAFL	9	Unmodified	_SLQEEIAFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MATCH	A375_MHC_IP_R2	2		1	1049.55135	1048.54408	0.091365	9.5893E-05	0.57262	0.00060099	0.66399	0.00069689	1049.5516121090066	126.51	0.75836	126.81	126.53	127.29	0.2951	-0.065077	0.00076859	NaN	53.404	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116860000			50023	1093	36377	36668							0.02174617003538515
SLQEEIAKL	9	Unmodified	_SLQEEIAKL_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-SECPEP	A375_MHC_IP_R1	1	516.19189453125	2	515.792589	1029.57063	-0.61448	-0.00031694	-1.071	-0.00055242	-1.6855	-0.00086937	515.7921316062856	76.95	0.51115	76.95	76.622	77.133	0					12	9	2	0	0	0	0.090157	1	28074	28074		67.838	8.4698	1	1591900			50024	9167	36378	36669	48861	48861					0.057023058948516336
SLQEGSYLL	9	Unmodified	_SLQEGSYLL_					0	0	0		ENSG00000128915|ENST00000261520|ICE2;ENST00000558121.5_1_15:60715835-60734771:-|nuORF	ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	MULTI-MSMS	A375_MHC_IP_R2	2	505.66278076171875	2	505.263665	1008.51278	-0.61226	-0.00030935	-2.1545	-0.0010886	-2.7667	-0.0013979	505.26234896127846	91.933	0.96198	92.672	92.026	92.987	0.73902					26	18	2	0	0	0	0.13797	1	34946	34946		43.858	13.222	1	1511600			50025	4169	36379	36670	48862	48862					0.008860439694331035
SLQEHGMMF	9	Unmodified	_SLQEHGMMF_					0	0	0			REV__nc|ENSG00000107815|Q96RR1-3|TWNK	REV__nc|ENSG00000107815|Q96RR1-3|TWNK	MULTI-MSMS	A375_MHC_IP_R1	1	540.1748657226562	2	540.23607	1078.45759	-0.63694	-0.0003441	1.8735	0.0010121	1.2365	0.00066801	540.2367402536697	73.319	1.267	73.319	72.93	74.197	0					40	24	3	0	0	0	0.64808	1	26960	26960		11.64	0	1	2972600	+		50026	17498	36380	36671	48863	48863					-0.07850409094339739
SLQEKLWAI	9	Unmodified	_SLQEKLWAI_					0	0	0		ENST00000217398.3_1_20:32295514-32298573:-|nuORF;ENSG00000101417|ENST00000409299|PXMP4	ENST00000217398.3_1_20:32295514-32298573:-|nuORF	ENST00000217398.3_1_20:32295514-32298573:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	544.7107543945312	2	544.310949	1086.60735	-0.38187	-0.00020786	0.43502	0.00023679	0.053154	2.8932E-05	544.3110638013646	92.347	0.50679	92.347	92.059	92.566	0					20	9	3	0	0	0	0.0286	1	33936	33936		110.55	110.55	1	3575500			50027	2291	36381	36672	48864	48864					0.06750602511419856
SLQEKLWAI	9	Unmodified	_SLQEKLWAI_					0	0	0		ENST00000217398.3_1_20:32295514-32298573:-|nuORF;ENSG00000101417|ENST00000409299|PXMP4	ENST00000217398.3_1_20:32295514-32298573:-|nuORF	ENST00000217398.3_1_20:32295514-32298573:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	544.7103881835938	2	544.310949	1086.60735	-0.71905	-0.00039139	0.20036	0.00010906	-0.5187	-0.00028233	544.3109383305924	91.539	0.71124	92.273	91.919	92.63	0.73451					24	13	3	0	0	0	0.017727	1	34792	34792		86.332	32.499	1	4469700			50028	2291	36381	36672	48865	48865					0.06750602511419856
SLQELARFL	9	Unmodified	_SLQELARFL_					0	0	0		ENST00000592217.2_1_19:46271832-46273041:+|nuORF	ENST00000592217.2_1_19:46271832-46273041:+|nuORF	ENST00000592217.2_1_19:46271832-46273041:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	359.5853271484375	3	359.541475	1075.60259	-0.38309	-0.00013774	0.15975	5.7437E-05	-0.22334	-8.0299E-05	359.5415305093617	40.74	1.0161	41.515	40.93	41.946	0.77451					34	19	3	0	0	0	0.64808	1	14970	14970		7.609	0.50723	1	13812000			50029	13810	36382	36673	48866	48866					0.06781718368642942
SLQELWRV	8	Unmodified	_SLQELWRV_					0	0	0		SLC22A12|p.G295S|1|0.55|ENSG00000197891|chr11:64598568-64598568|G/A|missense_variant	SLC22A12|p.G295S|1|0.55|ENSG00000197891|chr11:64598568-64598568|G/A|missense_variant	SLC22A12|p.G295S|1|0.55|ENSG00000197891|chr11:64598568-64598568|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	515.712890625	2	515.787641	1029.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.83	1	106.59	106.09	107.09	0.75977								0	0	0	0.16876	1	40016	40016		21.747	1.293	1				50030	29172	36383	36674	48867	48867					0.04713162680127425
SLQELYSLLS	10	Unmodified	_SLQELYSLLS_					0	0	0		ENSG00000131778|ENST00000369258|CHD1L;nc|ENSG00000131778|Q86WJ1-4|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L	ENSG00000131778|ENST00000369258|CHD1L	ENSG00000131778|ENST00000369258|CHD1L	MULTI-SECPEP	A375_MHC_IP_R1	1	577.09423828125	2	576.810979	1151.6074	-0.14773	-8.5214E-05	0.045905	2.6479E-05	-0.10183	-5.8735E-05	576.8109832284865	100.56	0.70987	100.56	100.18	100.89	0					31	13	3	0	0	0	0.27758	1	36888	36888		53.404	19.002	1	4325000			50031	4350	36384	36675	48868	48868					0.037665577207462775
SLQENLESL	9	Unmodified	_SLQENLESL_					0	0	0		NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	517.1629638671875	2	516.764029	1031.5135	-0.73886	-0.00038182	0.0027546	1.4235E-06	-0.73611	-0.00038039	516.763976702342	85.267	0.81576	85.267	84.8	85.616	0					23	15	2	0	0	0	0.036758	1	31205	31205		99.755	39.681	1	2985100			50032	4441	36385	36676	48869	48869					-0.0009916138151311316
SLQENLESL	9	Unmodified	_SLQENLESL_					0	0	0		NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	NES|p.S1462Lfs*2|1|0.22|ENSG00000132688|chr1:156669804-156669804|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1637573242188	2	516.764029	1031.5135	-0.66006	-0.00034109	-0.50509	-0.00026101	-1.1651	-0.00060211	516.7636570548264	84.535	0.70972	85.271	84.865	85.574	0.73602					20	13	2	0	0	0	0.011451	1	32131	32131		107.19	25.297	1	2657800			50033	4441	36385	36676	48870	48870					-0.0009916138151311316
SLQETIQSL	9	Unmodified	_SLQETIQSL_					0	0	0		nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	MULTI-MSMS	A375_MHC_IP_R1	1	509.19219970703125	2	509.774396	1017.53424	-0.50626	-0.00025808	0.23455	0.00011957	-0.27172	-0.00013851	509.77439739385466	89.855	1.0124	89.855	89.323	90.336	0					52	19	4	0	0	0	0.014789	1	32980	32980		90.135	4.4934	1	14509000			50034	3621	36386	36677	48871	48871					0.026174289981554466
SLQETIQSL	9	Unmodified	_SLQETIQSL_					0	0	0		nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	MULTI-SECPEP	A375_MHC_IP_R2	2	510.1742248535156	2	509.774396	1017.53424	-0.66767	-0.00034036	-0.020725	-1.0565E-05	-0.68839	-0.00035092	509.774363321398	89.133	1.0626	89.864	89.431	90.493	0.7318					50	20	4	0	0	0	0.01147	1	33857	33857		121.53	28.881	1	15625000			50035	3621	36386	36677	48872	48872					0.026174289981554466
SLQEYTNSMY	10	Unmodified	_SLQEYTNSMY_					0	0	0			REV__ENST00000464168.5_1_3:49362133-49365232:-|nuORF	REV__ENST00000464168.5_1_3:49362133-49365232:-|nuORF	MSMS	A375_MHC_IP_R1	1	618.2140502929688	2	618.266078	1234.5176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.6	1	101.6	101.1	102.1	0								0	0	0	0.15332	1	37337	37337		10.074	0	1		+		50036	17819	36387	36678	48873	48873					-0.09027439950114058
SLQFKLPGL	9	Unmodified	_SLQFKLPGL_					0	0	0		ENST00000468469.5_1_10:22605688-22605880:+|nuORF	ENST00000468469.5_1_10:22605688-22605880:+|nuORF	ENST00000468469.5_1_10:22605688-22605880:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.20233154296875	2	501.80276	1001.59097	-0.51912	-0.0002605	-0.35355	-0.00017741	-0.87267	-0.00043791	501.80263286680884	91.209	0.50684	91.209	90.997	91.503	0					16	9	2	0	0	0	0.3213	1	33540	33540		24.021	0	1	1725400			50037	12308	36388	36679	48874	48874					0.09023521345329755
SLQGDDEEV	9	Unmodified	_SLQGDDEEV_					0	0	0			REV__ENSG00000167210|ENST00000642948|LOXHD1	REV__ENSG00000167210|ENST00000642948|LOXHD1	MULTI-MSMS	A375_MHC_IP_R1	1	496.6142578125	2	496.214369	990.414184	-0.30854	-0.0001531	0.42419	0.00021049	0.11565	5.7388E-05	496.2146520644177	89.075	1.0664	89.075	88.663	89.73	0					47	20	3	0	0	0	0.6898	1	32676	32676		7.9102	0	1	8408000	+		50038	20742	36389	36680	48875	48875					-0.08140604066272772
SLQGLVSWGDY	11	Unmodified	_SLQGLVSWGDY_					0	0	0		ENST00000595585.1_1_19:51446889-51452204:-|nuORF;ENSG00000167754|ENST00000336334|KLK5	ENST00000595585.1_1_19:51446889-51452204:-|nuORF	ENST00000595585.1_1_19:51446889-51452204:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	611.536865234375	2	612.798403	1223.58225	-0.45148	-0.00027666	-0.56968	-0.0003491	-1.0212	-0.00062576	612.7983278301191	83.881	0.30456	83.881	83.786	84.091	0					8	5	2	0	0	0	0.73459	1	30734	30734		4.5289	0.93237	1	1135000			50039	7221	36390	36681	48876	48876					-0.020594970817910507
SLQGTDDQSP	10	Unmodified	_SLQGTDDQSP_					0	0	0		ENST00000427177.5_1_17:75495984-75496248:+|nuORF	ENST00000427177.5_1_17:75495984-75496248:+|nuORF	ENST00000427177.5_1_17:75495984-75496248:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	523.6438598632812	2	524.233093	1046.45163	-0.81486	-0.00042718	-0.9733	-0.00051024	-1.7882	-0.00093742	524.2323848392764	60.772	0.35476	61.517	61.263	61.618	0.74504					11	6	3	0	0	0	0.70528	1	23008	23008		32.786	3.7041	1	1467600			50040	11816	36391	36682	48877	48877					-0.06973512800664139
SLQHWWNL	8	Unmodified	_SLQHWWNL_					0	0	0		ENST00000562423.5_1_15:29037113-29046522:+|nuORF;ENST00000337743.8_1_20:13567977-13605857:-|nuORF	ENST00000562423.5_1_15:29037113-29046522:+|nuORF	ENST00000562423.5_1_15:29037113-29046522:+|nuORF	MSMS	A375_MHC_IP_R2	2	542.20263671875	2	542.272158	1082.52976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.78	1	103.54	103.04	104.04	0.76428								0	0	0	0.16876	1	38936	38936		14.582	0	1				50041	10832	36392	36683	48878	48878					-0.0081999063411331
SLQIELQQV	9	Unmodified	_SLQIELQQV_					0	0	0			REV__nc|ENSG00000128573|O15409-2|FOXP2	REV__nc|ENSG00000128573|O15409-2|FOXP2	MULTI-MSMS	A375_MHC_IP_R1	1	529.7293701171875	2	529.298039	1056.58152	-0.28863	-0.00015277	0.011842	6.2681E-06	-0.27679	-0.0001465	529.2981816453283	108.42	0.40688	108.42	108.15	108.56	0					10	7	2	0	0	0	0.51106	1	39710	39710		19.257	2.1441	1	921040	+		50042	18453	36393	36684	48879	48879					0.0554970826913177
SLQIFRKW	8	Unmodified	_SLQIFRKW_					0	0	0		nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENST00000478641.5_1_1:1248876-1249468:-|nuORF;ENST00000470030.6_1_1:1248876-1250311:-|nuORF;ENST00000525164.5_1_1:1248165-1249114:-|nuORF;ENST00000461514.6_1_1:1248044-1249114:-|nuORF;ENST00000485710.5_1_1:1247522-1249186:-|nuORF	nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	MULTI-SECPEP	A375_MHC_IP_R2	2	539.6967163085938	2	539.313826	1076.6131	-0.99369	-0.00053591	-1.2365	-0.00066688	-2.2302	-0.0012028	539.312655233791	66.387	0.35835	67.124	66.983	67.342	0.73631					11	6	3	0	0	0	0.96873	1	25116	25116		10.824	0.75	1	791430			50043	4074	36394	36685	48880	48880					0.0778574581374869
SLQIFSFWA	9	Unmodified	_SLQIFSFWA_					0	0	0			REV__ENST00000472311.6_1_6:75947586-75947649:-|nuORF	REV__ENST00000472311.6_1_6:75947586-75947649:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	550.1841430664062	2	549.784567	1097.55458	-0.44699	-0.00024575	0.3131	0.00017214	-0.13389	-7.361E-05	549.7845533943575	97.226	0.60657	97.226	96.883	97.49	0					31	11	4	0	0	0	0.47368	1	35701	35701		20.454	0	1	4631500	+		50044	25135	36395	36686	48881	48881					0.009706444486027976
SLQIRQLPQP	10	Unmodified	_SLQIRQLPQP_					0	0	0		ENST00000415912.6_1_1:21545657-21545924:-|nuORF	ENST00000415912.6_1_1:21545657-21545924:-|nuORF	ENST00000415912.6_1_1:21545657-21545924:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	589.7431030273438	2	590.345855	1178.67716	0.12474	7.3639E-05	-0.29301	-0.00017298	-0.16827	-9.934E-05	590.3457218900779	126.86	0.40472	126.86	126.61	127.01	0					12	7	2	0	0	0	0.93799	1	48446	48446		0.35063	0	1	14037000			50045	11683	36396	36687	48882	48882					0.09496481180030969
SLQKEILYL	9	Unmodified	_SLQKEILYL_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-SECPEP	A375_MHC_IP_R1	1	554.2135620117188	2	553.826432	1105.63831	-0.37826	-0.00020949	-1.7166	-0.0009507	-2.0949	-0.0011602	553.825346878405	71.466	0.40668	71.466	71.159	71.565	0					10	7	2	0	0	0	0.53748	1	25961	25961		24.021	1.2843	1	1344800			50046	1419	36397	36688	48883	48883					0.08971755825655237
SLQKIASRE	9	Unmodified	_SLQKIASRE_					0	0	0		tr|U7SSR1|U7SSR1_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01459PE=4SV=1	tr|U7SSR1|U7SSR1_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01459PE=4SV=1	tr|U7SSR1|U7SSR1_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01459PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	516.6953735351562	2	516.29583	1030.57711	-1.1578	-0.00059776	0.36989	0.00019097	-0.78789	-0.00040678	516.295947215757	123.28	0.9573	123.28	122.88	123.84	0					27	18	2	0	0	0	0.69674	1	46084	46084		7.2892	7.2892	1	25081000			50047	29645	36398	36689	48884	48884					0.06304243846238933
SLQKIASRE	9	Unmodified	_SLQKIASRE_					0	0	0		tr|U7SSR1|U7SSR1_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01459PE=4SV=1	tr|U7SSR1|U7SSR1_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01459PE=4SV=1	tr|U7SSR1|U7SSR1_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01459PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	516.29583	1030.57711	-1.1578	-0.00059776	0.36989	0.00019097	-0.78789	-0.00040678	516.295947215757	123.28	0.9573	123.28	122.88	123.84	0	-0.087959	0.00012604	NaN	7.2892	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25081000			50048	29645	36398	36689							0.06304243846238933
SLQKIASRE	9	Unmodified	_SLQKIASRE_					0	0	0		tr|U7SSR1|U7SSR1_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01459PE=4SV=1	tr|U7SSR1|U7SSR1_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01459PE=4SV=1	tr|U7SSR1|U7SSR1_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01459PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	516.29583	1030.57711	-0.76182	-0.00039332	-0.01331	-6.8718E-06	-0.77513	-0.0004002	516.2957972691834	123.08	0.55727	123.46	123.23	123.78	0.3766	0.087959	-0.00026964	NaN	7.2892	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16943000			50049	29645	36398	36689							0.06304243846238933
SLQKILHQL	9	Unmodified	_SLQKILHQL_					0	0	0		ENST00000399022.8_1_18:33613695-33613761:-|nuORF	ENST00000399022.8_1_18:33613695-33613761:-|nuORF	ENST00000399022.8_1_18:33613695-33613761:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	360.9570007324219	3	360.557236	1078.64988	0.1271	4.5827E-05	-0.35401	-0.00012764	-0.22691	-8.1816E-05	360.55708414852944	60.527	0.56025	60.527	60.21	60.77	0					15	10	2	0	0	0	0.25276	1	21815	21815		31.268	16.02	1	1486800			50050	11533	36399	36690	48885	48885					0.11369997639667417
SLQKILHQL	9	Unmodified	_SLQKILHQL_					0	0	0		ENST00000399022.8_1_18:33613695-33613761:-|nuORF	ENST00000399022.8_1_18:33613695-33613761:-|nuORF	ENST00000399022.8_1_18:33613695-33613761:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	540.73193359375	2	540.332216	1078.64988	-0.64617	-0.00034915	0.11287	6.0988E-05	-0.5333	-0.00028816	540.3321819098784	60.509	0.45874	60.509	60.312	60.77	0					17	8	3	0	0	0	0.35788	1	21790	21790		61.09	33.461	1	2853500			50051	11533	36399	36690	48886	48886					0.11369997639667417
SLQKILHQL	9	Unmodified	_SLQKILHQL_					0	0	0		ENST00000399022.8_1_18:33613695-33613761:-|nuORF	ENST00000399022.8_1_18:33613695-33613761:-|nuORF	ENST00000399022.8_1_18:33613695-33613761:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	360.95697021484375	3	360.557236	1078.64988	-0.60183	-0.00021699	-0.13725	-4.9487E-05	-0.73908	-0.00026648	360.5571359676845	59.362	0.55486	60.109	59.845	60.4	0.74714					20	10	3	0	0	0	0.05754	1	22479	22479		47.594	27.18	1	2149200			50052	11533	36399	36690	48887	48887					0.11369997639667417
SLQKILHQL	9	Unmodified	_SLQKILHQL_					0	0	0		ENST00000399022.8_1_18:33613695-33613761:-|nuORF	ENST00000399022.8_1_18:33613695-33613761:-|nuORF	ENST00000399022.8_1_18:33613695-33613761:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	540.7313842773438	2	540.332216	1078.64988	-1.25	-0.00067544	0.29289	0.00015826	-0.95716	-0.00051718	540.3322217345134	59.294	0.60543	60.042	59.845	60.45	0.74714					16	11	2	0	0	0	0.6191	1	22458	22458		36.506	7.4246	1	1762900			50053	11533	36399	36690	48888	48888					0.11369997639667417
SLQKSVLGV	9	Unmodified	_SLQKSVLGV_					0	0	0		ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	MULTI-SECPEP	A375_MHC_IP_R1	1	466.184326171875	2	465.784567	929.554582	-0.36124	-0.00016826	0.04811	2.2409E-05	-0.31313	-0.00014585	465.784525080607	52.719	0.66125	52.719	52.387	53.048	0					31	12	4	0	0	0	0.035151	1	18764	18764		103.82	31.901	1	16570000			50054	6160	36400	36691	48889	48889					0.08698644448622872
SLQKSVLGV	9	Unmodified	_SLQKSVLGV_					0	0	0		ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	MULTI-SECPEP	A375_MHC_IP_R2	2	466.18353271484375	2	465.784567	929.554582	-0.93641	-0.00043616	0.13819	6.4365E-05	-0.79822	-0.0003718	465.7845805601455	51.843	0.66283	52.595	52.219	52.882	0.75225					32	12	4	0	0	0	0.016541	1	19471	19471		107.1	25.209	1	13925000			50055	6160	36400	36691	48890	48890					0.08698644448622872
SLQLFEEYFL	10	Unmodified	_SLQLFEEYFL_					0	0	0		ENSG00000276950|ENST00000621179|GSTT4	ENSG00000276950|ENST00000621179|GSTT4	ENSG00000276950|ENST00000621179|GSTT4	MULTI-SECPEP	A375_MHC_IP_R1	1	430.1218566894531	3	430.220178	1287.63871	-0.11524	-4.958E-05	-0.34097	-0.00014669	-0.45621	-0.00019627	430.21991149356586	20.119	0.3545	20.119	19.928	20.283	0					11	6	2	0	0	0	0.94651	1	5165	5165		0.12286	0.12286	1	1846800			50056	10024	36401	36692	48891	48891					0.0063913075484833826
SLQLGRAL	8	Unmodified	_SLQLGRAL_					0	0	0			REV__nc|ENSG00000168763|Q8NE01-2|CNNM3	REV__nc|ENSG00000168763|Q8NE01-2|CNNM3	MULTI-MSMS	A375_MHC_IP_R1	1	429.6640930175781	2	429.263802	856.513051	-0.15259	-6.5501E-05	0.30008	0.00012881	0.14749	6.3311E-05	429.2638966180477	64.084	0.50623	64.084	63.887	64.393	0					16	9	3	0	0	0	0.66714	1	23202	23202		42.095	5.9675	1	1664700	+		50057	20883	36402	36693	48892	48892					0.07905508479939272
SLQLGRAL	8	Unmodified	_SLQLGRAL_					0	0	0			REV__nc|ENSG00000168763|Q8NE01-2|CNNM3	REV__nc|ENSG00000168763|Q8NE01-2|CNNM3	MULTI-MSMS	A375_MHC_IP_R2	2	429.66387939453125	2	429.263802	856.513051	-0.16417	-7.0472E-05	0.41721	0.00017909	0.25304	0.00010862	429.263900360194	63.058	0.35437	63.8	63.584	63.938	0.74263					11	6	2	0	0	0	0.66714	1	23934	23934		42.095	5.9675	1	1685100	+		50058	20883	36402	36693	48893	48893					0.07905508479939272
SLQLHFPNQSE	11	Unmodified	_SLQLHFPNQSE_					0	0	0			REV__GRIN3A|p.L236F|1|0.64|ENSG00000198785|chr9:101687194-101687194|G/A|missense_variant	REV__GRIN3A|p.L236F|1|0.64|ENSG00000198785|chr9:101687194-101687194|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	433.9626159667969	3	433.882448	1298.62551	-0.46415	-0.00020139	0.54226	0.00023528	0.078107	3.3889E-05	433.882593285475	23.653	0.55906	23.653	23.483	24.042	0					17	10	3	0	0	0	0.99411	1	6617	6617		9.7643	0.52048	1	15255000	+		50059	26714	36403	36694	48894	48894					-0.011853073045358542
SLQLLGFFK	9	Unmodified	_SLQLLGFFK_					0	0	0		ENST00000531791.1_1_11:65146834-65147158:-|nuORF	ENST00000531791.1_1_11:65146834-65147158:-|nuORF	ENST00000531791.1_1_11:65146834-65147158:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1052.4278564453125	1	1052.61389	1051.60662	0.05186	5.4588E-05	0.6204	0.00065304	0.67226	0.00070763	1053.6163992514144	121.35	0.25413	121.8	121.67	121.93	0.44488					6	4	2	0	0	0	0.70411	1	46346	46346		10.074	5.7447	1	27483000			50060	13178	36404	36695	48895	48895					0.08287807862370755
SLQLPMFCC	9	Unmodified	_SLQLPMFCC_					0	0	0			REV__ENST00000349496.9_1_3:41267059-41267242:+|nuORF	REV__ENST00000349496.9_1_3:41267059-41267242:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	521.6314697265625	2	521.231941	1040.44933	-0.4712	-0.00024561	-0.37964	-0.00019788	-0.85084	-0.00044349	521.2317362551878	86.4	0.86801	87.133	86.794	87.662	0.73301					33	16	3	0	0	0	0.55818	1	32881	32881		16.942	1.0951	1	1788900	+		50061	23792	36405	36696	48896	48896					-0.0692767933533105
SLQLSREDCLN	11	Unmodified	_SLQLSREDCLN_					0	0	0		nc|ENSG00000251664|Q9UN75-2|PCDHA12;ENSG00000251664|ENST00000398631|PCDHA12	nc|ENSG00000251664|Q9UN75-2|PCDHA12	nc|ENSG00000251664|Q9UN75-2|PCDHA12	MULTI-MSMS	A375_MHC_IP_R2	2	639.710693359375	2	639.311351	1276.60815	-0.96596	-0.00061755	0.27643	0.00017673	-0.68953	-0.00044082	639.311400974296	49.17	0.45556	49.927	49.69	50.145	0.75737					19	8	3	0	0	0	0.73016	1	18484	18484		8.7454	0.58988	1	1480300			50062	9854	36406	36697	48897	48897					-0.01908970901831708
SLQLTNYSFLQ	11	Unmodified	_SLQLTNYSFLQ_					0	0	0		nc|ENSG00000164920|Q8N2R0-3|OSR2;ENSG00000143867|ENST00000272223|OSR1;nc|ENSG00000164920|Q8N2R0-2|OSR2;ENSG00000164920|ENST00000297565|OSR2	nc|ENSG00000164920|Q8N2R0-3|OSR2	nc|ENSG00000164920|Q8N2R0-3|OSR2	MSMS	A375_MHC_IP_R1	1	657.2390747070312	2	657.340435	1312.66632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.74	1	100.74	100.24	101.24	0								0	0	0	0.16197	1	37029	37029		8.4443	0.28878	1				50063	14736	36407	36698	48898	48898					0.022490340150852717
SLQLWDLEN	9	Unmodified	_SLQLWDLEN_					0	0	0			REV__AOAH|p.P299L|1|0.48|ENSG00000136250|chr7:36594381-36594381|G/A|missense_variant	REV__AOAH|p.P299L|1|0.48|ENSG00000136250|chr7:36594381-36594381|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	559.1981201171875	2	559.279846	1116.54514	-0.60662	-0.00033927	-0.21988	-0.00012297	-0.8265	-0.00046225	559.27955196777	33.13	0.55788	33.13	32.887	33.445	0					20	10	3	0	0	0	0.35581	1	10675	10675		26.884	2.8631	1	9289000	+		50064	15413	36408	36699	48899	48899					-0.00847168627569772
SLQNHLENI	9	Unmodified	_SLQNHLENI_					0	0	0		ENST00000465567.1_1_17:15930614-15930833:+|nuORF	ENST00000465567.1_1_17:15930614-15930833:+|nuORF	ENST00000465567.1_1_17:15930614-15930833:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	356.9206237792969	3	356.520851	1066.54072	-0.65904	-0.00023496	-0.80178	-0.00028585	-1.4608	-0.00052081	356.5207588097508	28.502	0.50646	29.181	28.757	29.263	0.67857					14	9	2	0	0	0	0.49205	1	9863	9863		15.739	0	1	4528300			50065	12244	36409	36700	48900	48900					0.010113669495240174
SLQNLIKWGRL	11	Unmodified	_SLQNLIKWGRL_					0	0	0			REV__nc|ENSG00000174325|Q969H9|DIRC1	REV__nc|ENSG00000174325|Q969H9|DIRC1	MSMS	A375_MHC_IP_R2	2	443.332763671875	3	443.266345	1326.7772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.71	1	137.8	137.3	138.3	0.083969								0	0	0	0.16337	1	54036	54036		0.40827	0	1		+		50066	27367	36410	36701	48901	48901					0.12688718513823005
SLQPEQIV	8	Unmodified	_SLQPEQIV_					0	0	0			REV__ENSG00000182749|ENST00000675840|PAQR7	REV__ENSG00000182749|ENST00000675840|PAQR7	MULTI-SECPEP	A375_MHC_IP_R2	2	457.6534729003906	2	457.2531	912.491647	-0.18235	-8.3379E-05	0.15325	7.0075E-05	-0.029097	-1.3304E-05	457.2531313125899	98.833	0.60677	99.593	99.251	99.858	0.75977					21	11	3	0	0	0	0.84294	1	37489	37489		37.974	1.847	1	2874800	+		50067	21705	36411	36702	48902	48902					0.03190078660566087
SLQPLPPRFKR	11	Unmodified	_SLQPLPPRFKR_					0	0	0		ENST00000396655.6_1_12:4758292-4777674:+|nuORF;nc|ENSG00000180815|Q6ZN16-3|MAP3K15;ENST00000518578.5_1_X:19378869-19431499:-|nuORF	ENST00000396655.6_1_12:4758292-4777674:+|nuORF;nc|ENSG00000180815|Q6ZN16-3|MAP3K15	nc|ENSG00000180815|Q6ZN16-3|MAP3K15	MSMS	A375_MHC_IP_R2	2	669.9147338867188	2	669.903871	1337.79319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.24	1	117.9	117.4	118.4	0.65962								0	0	0	0.16258	1	44349	44349		5.2969	1.3525	1				50068	12973;11493	36412	36703	48903	48903					0.1378042475073471
SLQPPPIHLY	10	Unmodified	_SLQPPPIHLY_					0	0	0			REV__nc|ENSG00000106484|Q5EB52-3|MEST	REV__nc|ENSG00000106484|Q5EB52-3|MEST	MSMS	A375_MHC_IP_R2	2	583.2216796875	2	582.824224	1163.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.886	1	33.623	33.123	34.123	0.73692								0	0	0	0.1552	1	11742	11742		3.9444	0	1		+		50069	17453	36413	36704	48904	48904					0.05862291402763731
SLQQLVKTL	9	Unmodified	_SLQQLVKTL_					0	0	0			REV__GRXCR1|p.P130L|1|0.21|ENSG00000215203|chr4:42962896-42962896|C/T|missense_variant	REV__GRXCR1|p.P130L|1|0.21|ENSG00000215203|chr4:42962896-42962896|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	515.2576293945312	2	515.318774	1028.623	-0.45723	-0.00023562	0.23763	0.00012246	-0.2196	-0.00011316	515.318773134885	70.825	0.30573	70.825	70.648	70.953	0					7	5	2	0	0	0	0.60917	1	25734	25734		25.399	25.399	1	587970	+		50070	26719	36414	36705	48905	48905					0.1098288902846889
SLQRKLRKEQ	10	Unmodified	_SLQRKLRKEQ_					0	0	0		nc|ENSG00000075292|Q14966-2|ZNF638;nc|ENSG00000075292|Q14966-6|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638	nc|ENSG00000075292|Q14966-2|ZNF638	nc|ENSG00000075292|Q14966-2|ZNF638	MSMS	A375_MHC_IP_R1	1	643.458984375	2	643.388585	1284.76262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.6	1	81.6	81.1	82.1	0								0	0	0	0.15549	1	29821	29821		2.9952	0	1				50071	1606	36415	36706	48906	48906					0.1316264636568576
SLQRRHTSRKL	11	Unmodified	_SLQRRHTSRKL_					0	0	0		ENSG00000189132|ENST00000329357|FAM47B;ENSG00000198173|ENST00000358047|FAM47C	ENSG00000189132|ENST00000329357|FAM47B	ENSG00000189132|ENST00000329357|FAM47B	MULTI-SECPEP	A375_MHC_IP_R1	1	461.00439453125	3	461.276014	1380.80621	-0.53746	-0.00024792	0.61597	0.00028413	0.078505	3.6212E-05	461.276112007645	136.59	1.0257	136.59	136.1	137.13	0					30	19	2	0	0	0	1.0005	1	52656	52656		1.1098	0	1	796710			50072	8963	36416	36707	48907	48907					0.13104255862822356
SLQRRLPRT	9	Unmodified	_SLQRRLPRT_					0	0	0			REV__ENSG00000130513|ENST00000252809|GDF15	REV__ENSG00000130513|ENST00000252809|GDF15	MULTI-SECPEP	A375_MHC_IP_R2	2	375.604736328125	3	376.231634	1125.67307	-0.040521	-1.5245E-05	-0.051597	-1.9412E-05	-0.092118	-3.4658E-05	376.5659165240377	23.604	0.20353	24.234	24.079	24.283	0.63014					5	3	2	0	0	0	0.80535	1	7600	7600		4.5289	0	1	1262800	+		50073	18544	36417	36708	48908	48908					0.11526436476970048
SLQRWEWC	8	Unmodified	_SLQRWEWC_					0	0	0			REV__ENST00000455565.5_2_17:43713856-43713925:+|nuORF	REV__ENST00000455565.5_2_17:43713856-43713925:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	369.9501647949219	3	369.839526	1106.49675	0.50888	0.00018821	-0.39731	-0.00014694	0.11158	4.1265E-05	369.83935087613816	45.662	0.65741	45.662	45.334	45.992	0					19	12	2	0	0	0	0.972	1	15897	15897		0.30703	0.16714	1	2468500	+		50074	24929	36418	36709	48909	48909					-0.05223940748464884
SLQSEDWTL	9	Unmodified	_SLQSEDWTL_					0	0	0		ENST00000537091.2_1_17:17772601-17875627:-|nuORF;nc|ENSG00000175662|Q6ZVM7-2|TOM1L2;nc|ENSG00000175662|Q6ZVM7-3|TOM1L2;nc|ENSG00000175662|Q6ZVM7-5|TOM1L2;ENSG00000175662|ENST00000379504|TOM1L2	ENST00000537091.2_1_17:17772601-17875627:-|nuORF	ENST00000537091.2_1_17:17772601-17875627:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	539.6640014648438	2	539.756204	1077.49785	-0.96443	-0.00052056	-0.37909	-0.00020462	-1.3435	-0.00072517	539.7554962151472	36.645	0.25567	36.645	36.489	36.745	0					6	4	2	0	0	0	0.58047	1	12300	12300		15.847	4.2069	1	528720			50075	7974	36419	36710	48910	48910					-0.03779447898568833
SLQSFIHGV	9	Unmodified	_SLQSFIHGV_					0	0	0		nc|ENSG00000170537|Q7Z402-2|TMC7;ENSG00000170537|ENST00000304381|TMC7;TMC7|p.S664F|1|0.16|ENSG00000170537|chr16:19056661-19056661|C/T|missense_variant	nc|ENSG00000170537|Q7Z402-2|TMC7	nc|ENSG00000170537|Q7Z402-2|TMC7	MULTI-MSMS	A375_MHC_IP_R1	1	494.66650390625	2	494.266542	986.51853	-0.28377	-0.00014026	2.0515	0.001014	1.7677	0.00087372	494.2668820892082	79.392	0.61712	79.392	79.111	79.728	0					22	11	3	0	0	0	0.091096	1	28966	28966		52.268	10.429	1	3847000			50076	7519	36420	36711	48911	48911					0.024731872717552505
SLQSFIHGV	9	Unmodified	_SLQSFIHGV_					0	0	0		nc|ENSG00000170537|Q7Z402-2|TMC7;ENSG00000170537|ENST00000304381|TMC7;TMC7|p.S664F|1|0.16|ENSG00000170537|chr16:19056661-19056661|C/T|missense_variant	nc|ENSG00000170537|Q7Z402-2|TMC7	nc|ENSG00000170537|Q7Z402-2|TMC7	MULTI-SECPEP	A375_MHC_IP_R2	2	494.6660461425781	2	494.266542	986.51853	-0.44387	-0.00021939	0.46043	0.00022758	0.016565	8.1875E-06	494.26636425424846	78.451	0.45606	79.195	78.982	79.438	0.74473					18	8	3	0	0	0	0.10969	1	29784	29784		48.346	12.219	1	3083600			50077	7519	36420	36711	48912	48912					0.024731872717552505
SLQSHTEYI	9	Unmodified	_SLQSHTEYI_					0	0	0		ENSG00000168297|ENST00000356151|PXK;nc|ENSG00000168297|Q7Z7A4-2|PXK	ENSG00000168297|ENST00000356151|PXK	ENSG00000168297|ENST00000356151|PXK	MULTI-SECPEP	A375_MHC_IP_R1	1	539.2095947265625	2	539.264196	1076.51384	-0.96656	-0.00052123	-0.12353	-6.6617E-05	-1.0901	-0.00058785	539.2639823051392	36.618	0.4567	36.618	36.439	36.895	0					13	8	2	0	0	0	0.58271	1	12320	12320		26.884	12.478	1	3205900			50078	7284	36421	36712	48913	48913					-0.021357416616638147
SLQSLETSV	9	Unmodified	_SLQSLETSV_					0	0	0		nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4;ENST00000484746.1_3_1:203702465-203708979:+|nuORF;ENST00000367218.7_1_1:203702465-203708979:+|nuORF	nc|ENSG00000058668|P23634-7|ATP2B4	nc|ENSG00000058668|P23634-7|ATP2B4	MULTI-MSMS	A375_MHC_IP_R1	1	482.65325927734375	2	482.253297	962.492041	-0.16253	-7.8379E-05	-0.1285	-6.1969E-05	-0.29103	-0.00014035	482.25319705114657	71.599	0.55257	71.599	71.313	71.866	0					21	10	3	0	0	0	0.0090297	2	25964	25964;26030		99.755	39.681	1	7295400			50079	1295	36422	36713	48914;48915	48914					0.009294535897765854
SLQSLETSV	9	Unmodified	_SLQSLETSV_					0	0	0		nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4;ENST00000484746.1_3_1:203702465-203708979:+|nuORF;ENST00000367218.7_1_1:203702465-203708979:+|nuORF	nc|ENSG00000058668|P23634-7|ATP2B4	nc|ENSG00000058668|P23634-7|ATP2B4	MULTI-MSMS	A375_MHC_IP_R2	2	482.6530456542969	2	482.253297	962.492041	-0.62297	-0.00030043	0.02143	1.0335E-05	-0.60154	-0.00029009	482.25326748966046	70.713	0.70883	71.447	71.2	71.908	0.73421					29	13	3	0	0	0	0.0096896	2	26821	26804;26821		122.18	43.451	1	9765700			50080	1295	36422	36713	48916;48917	48917					0.009294535897765854
SLQSPPRSPL	10	Unmodified	_SLQSPPRSPL_					0	0	0			REV__ENSG00000162714|ENST00000682384|ZNF496	REV__ENSG00000162714|ENST00000682384|ZNF496	MSMS	A375_MHC_IP_R2	2	541.2854614257812	2	541.303655	1080.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.36	1	118.02	117.52	118.52	0.65962								0	0	0	0.14983	1	44401	44401		18.146	0.011366	1		+		50081	20296	36423	36714	48918	48918					0.05568530363279933
SLQSTILGV	9	Unmodified	_SLQSTILGV_					0	0	0		ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2	ENSG00000102910|ENST00000285737|LONP2	ENSG00000102910|ENST00000285737|LONP2	MULTI-MSMS	A375_MHC_IP_R1	1	919.892333984375	1	917.530224	916.522947	-0.073581	-6.7513E-05	0.32062	0.00029418	0.24704	0.00022667	917.5304736520363	104	1.3713	104	103.52	104.89	0					66	26	4	0	0	0	0.2002	1	38219	38219		37.974	0	1	96560000			50082	2402	36424	36715	48919	48919					0.06134651694674176
SLQSTILGV	9	Unmodified	_SLQSTILGV_					0	0	0		ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2	ENSG00000102910|ENST00000285737|LONP2	ENSG00000102910|ENST00000285737|LONP2	MULTI-MSMS	A375_MHC_IP_R2	2	459.6685791015625	2	459.26875	916.522947	-0.36335	-0.00016687	-0.24759	-0.00011371	-0.61094	-0.00028059	459.26859442045014	103.06	1.9826	103.82	103.38	105.36	0.76428					103	38	5	0	0	0	0.015356	1	38962	38962		89.401	0.44686	1	88152000			50083	2402	36424	36715	48920	48920					0.06134651694674176
SLQTPLPLKKK	11	Unmodified	_SLQTPLPLKKK_					0	0	0		ENST00000250111.8_1_17:7560666-7560732:+|nuORF	ENST00000250111.8_1_17:7560666-7560732:+|nuORF	ENST00000250111.8_1_17:7560666-7560732:+|nuORF	MSMS	A375_MHC_IP_R1	1	626.8153686523438	2	626.903005	1251.79146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.54	1	124.54	124.04	125.04	0								0	0	0	0.16124	1	46956	46956		12.241	0.74595	1				50084	10199	36425	36716	48921	48921					0.17563370942116308
SLQVDWHEEEW	11	Unmodified	_SLQVDWHEEEW_					0	0	0		nc|ENSG00000040933|Q96PE3-2|INPP4A;nc|ENSG00000040933|Q96PE3-4|INPP4A;ENSG00000040933|ENST00000409851|INPP4A;nc|ENSG00000040933|Q96PE3|INPP4A	nc|ENSG00000040933|Q96PE3-2|INPP4A	nc|ENSG00000040933|Q96PE3-2|INPP4A	MULTI-MSMS	A375_MHC_IP_R2	2	486.94921875	3	486.549246	1456.62591	-0.61836	-0.00030086	-0.079314	-3.859E-05	-0.69767	-0.00033945	486.5492250643307	30.352	0.40571	31.07	30.86	31.266	0.71857					17	7	3	0	0	0	0.73795	1	10665	10665		1.3296	0.82369	1	4026400			50085	1166	36426	36717	48922	48922					-0.08413932375310651
SLQVTGCACAC	11	Unmodified	_SLQVTGCACAC_					0	0	0		ENST00000486272.1_1_X:48367823-48369697:+|nuORF	ENST00000486272.1_1_X:48367823-48369697:+|nuORF	ENST00000486272.1_1_X:48367823-48369697:+|nuORF	MSMS	A375_MHC_IP_R1	1	528.1654052734375	2	528.219562	1054.42457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.756	1	47.756	47.256	48.256	0								0	0	0	0.16138	1	16813	16813		11.495	1.3441	1				50086	12582	36427	36718	48923	48923					-0.10046359208695321
SLQYLHEW	8	Unmodified	_SLQYLHEW_					0	0	0			REV__ENST00000375436.8_1_1:17734784-17734874:-|nuORF	REV__ENST00000375436.8_1_1:17734784-17734874:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	538.6638793945312	2	538.263999	1074.51345	-0.49615	-0.00026706	-0.26738	-0.00014392	-0.76354	-0.00041098	538.2636351402238	72.246	0.75935	72.246	71.815	72.575	0					33	14	3	0	0	0	0.51581	1	26260	26260		48.346	4.4876	1	11232000	+		50087	24129	36428	36719	48924	48924					-0.020831165908930416
SLRANLVSK	9	Unmodified	_SLRANLVSK_					0	0	0			REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30	REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1995849609375	2	494.300916	986.587279	-0.42404	-0.0002096	0.62555	0.00030921	0.20151	9.9608E-05	494.3012118380387	133.11	0.4567	133.27	132.99	133.45	0.16487					11	8	2	0	0	0	0.74412	1	52386	52386		14.838	1.3304	1	5390500	+		50088	18762	36429	36720	48925	48925					0.09344851571461277
SLRAPVDED	9	Unmodified	_SLRAPVDED_					0	0	0		ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	MSMS	A375_MHC_IP_R2	2	501.18695068359375	2	501.248546	1000.48254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.131	1	42.904	42.404	43.404	0.7724								0	0	0	0.12472	1	15663	15663		34.402	0.29928	1				50089	2289	36430	36721	48926	48926					-0.017683146957665485
SLRATSYTPGV	11	Unmodified	_SLRATSYTPGV_					0	0	0			REV__ENSG00000086570|ENST00000261800|FAT2	REV__ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	A375_MHC_IP_R2	2	575.6637573242188	2	576.306395	1150.59824	-0.71119	-0.00040986	-1.1825	-0.00068149	-1.8937	-0.0010914	576.3057375133022	52.9	0.3034	53.651	53.538	53.842	0.75105					8	5	2	0	0	0	0.94168	1	19957	19957		10.8	0.72558	1	1145600	+		50090	16857	36431	36722	48927	48927					0.028962091550738478
SLRCLFDGF	9	Unmodified	_SLRCLFDGF_					0	0	0			REV__ENSG00000173198|ENST00000373304|CYSLTR1	REV__ENSG00000173198|ENST00000373304|CYSLTR1	MULTI-SECPEP	A375_MHC_IP_R2	2	528.6386108398438	2	529.260402	1056.50625	-0.60503	-0.00032022	-2.1516	-0.0011388	-2.7566	-0.001459	529.7614748794714	82.145	0.30577	82.888	82.787	83.093	0.74293					6	5	2	0	0	0	0.71541	1	31197	31197		7.2892	0	1	542410	+		50091	21202	36432	36723	48928	48928					-0.019741724629511737
SLRCYSQV	8	Unmodified	_SLRCYSQV_					0	0	0			REV__ENSG00000253729|ENST00000314191|PRKDC	REV__ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	A375_MHC_IP_R1	1	478.63641357421875	2	478.236927	954.459301	-0.48083	-0.00022995	0.95094	0.00045478	0.47011	0.00022482	478.23730805299687	99.578	0.9599	99.578	99.168	100.13	0					42	18	3	0	0	0	0.51581	1	36527	36527		48.346	2.3249	1	9439700	+		50092	22858	36433	36724	48929	48929					-0.019750320140815347
SLRCYSQV	8	Unmodified	_SLRCYSQV_					0	0	0			REV__ENSG00000253729|ENST00000314191|PRKDC	REV__ENSG00000253729|ENST00000314191|PRKDC	MULTI-SECPEP	A375_MHC_IP_R1	1	477.64886474609375	2	478.236927	954.459301	-0.48083	-0.00022995	0.95094	0.00045478	0.47011	0.00022482	478.23730805299687	99.578	0.9599	99.578	99.168	100.13	0					42	18	3	0	0	0	0.73563	1	36514	36514		36.044	5.8194	1	9439700	+		50093	22858	36433	36724	48930	48930					-0.019750320140815347
SLRCYSQV	8	Unmodified	_SLRCYSQV_					0	0	0			REV__ENSG00000253729|ENST00000314191|PRKDC	REV__ENSG00000253729|ENST00000314191|PRKDC	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	478.236927	954.459301	-0.43292	-0.00020704	1.0979	0.00052507	0.66501	0.00031803	478.2374190668687	98.829	0.81303	99.589	99.301	100.11	0.75977	0.0051971	6.8996E-05	NaN	48.346	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10071000	+		50094	22858	36433	36724							-0.019750320140815347
SLRDKHKAI	9	Unmodified	_SLRDKHKAI_					0	0	0		tr|U7SGS6|U7SGS6_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02306PE=3SV=1	tr|U7SGS6|U7SGS6_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02306PE=3SV=1	tr|U7SGS6|U7SGS6_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02306PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	357.29022216796875	3	356.548852	1066.62473	-0.48533	-0.00017304	0.051703	1.8434E-05	-0.43362	-0.00015461	356.54880993190596	23.712	0.45787	24.342	24.079	24.537	0.63014					13	8	3	0	0	0	0.74412	1	7594	7594		10.151	7.6521	1	2990700			50095	29414	36434	36725	48931	48931					0.09407942837083283
SLRDPRTV	8	Unmodified	_SLRDPRTV_					0	0	0		PEAK1|p.P1058L|1|0.36|ENSG00000173517|chr15:77158661-77158661|G/A|missense_variant	PEAK1|p.P1058L|1|0.36|ENSG00000173517|chr15:77158661-77158661|G/A|missense_variant	PEAK1|p.P1058L|1|0.36|ENSG00000173517|chr15:77158661-77158661|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	472.6697998046875	2	472.269616	942.524678	-0.36844	-0.000174	-0.04294	-2.0279E-05	-0.41138	-0.00019428	472.26956050665984	113.7	2.7925	114.41	113.62	116.41	0.70984					135	54	3	0	0	0	0.77488	1	43593	43593		13.508	4.9146	1	15090000			50096	15157	36435	36726	48932	48932					0.05111705503270514
SLRDRARRFEE	11	Unmodified	_SLRDRARRFEE_					0	0	0		ENSG00000132938|ENST00000612955|MTUS2;nc|ENSG00000132938|Q5JR59-4|MTUS2;nc|ENSG00000132938|Q5JR59-3|MTUS2	ENSG00000132938|ENST00000612955|MTUS2	ENSG00000132938|ENST00000612955|MTUS2	MSMS	A375_MHC_IP_R2	2	718.1873779296875	2	717.881656	1433.74876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.456	1	60.203	59.703	60.703	0.74714								0	0	0	0.16307	1	22502	22502		2.7352	0	1				50097	4465	36436	36727	48933	48933					0.049233688665935915
SLRDSLYFT	9	Unmodified	_SLRDSLYFT_					0	0	0		nc|ENSG00000145113|Q99102-12|MUC4;nc|ENSG00000145113|Q99102-13|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4	nc|ENSG00000145113|Q99102-12|MUC4	nc|ENSG00000145113|Q99102-12|MUC4	MULTI-SECPEP	A375_MHC_IP_R2	2	551.1846313476562	2	551.282389	1100.55022	-0.70181	-0.0003869	0.82656	0.00045567	0.12475	6.8773E-05	551.2822398110067	64.286	0.81504	65.026	64.597	65.412	0.74022					37	15	4	0	0	0	0.62767	1	24245	24245		11.64	0	1	5158400			50098	5539	36437	36728	48934	48934					0.003971352350390589
SLREALVPL	9	Unmodified	_SLREALVPL_					0	0	0		ENSG00000109758|ENST00000382774|HGFAC;CON__ENSEMBL:ENSBTAP00000023055	ENSG00000109758|ENST00000382774|HGFAC	ENSG00000109758|ENST00000382774|HGFAC	MULTI-MSMS	A375_MHC_IP_R1	1	500.2155456542969	2	499.305667	996.596781	-0.30242	-0.000151	-0.26602	-0.00013282	-0.56843	-0.00028382	499.3054849610973	82.9	0.70686	82.9	82.571	83.277	0					34	13	3	0	0	0	0.64808	1	30217	30217		11.64	0	1	7010300			50099	2889	36438	36729	48935	48935					0.09834619856974314
SLREDFLQQNA	11	Unmodified	_SLREDFLQQNA_					0	0	0		tr|U7SLP8|U7SLP8_FUSNUV-typeATPsynthasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1	tr|U7SLP8|U7SLP8_FUSNUV-typeATPsynthasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1	tr|U7SLP8|U7SLP8_FUSNUV-typeATPsynthasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	441.1294250488281	3	440.889603	1319.64698	-0.43544	-0.00019198	0.057576	2.5385E-05	-0.37786	-0.0001666	440.88963510456665	41.61	0.46049	41.61	41.368	41.828	0					12	6	2	0	0	0	0.73064	1	14324	14324		8.2864	0	1	2971900			50100	29505	36439	36730	48936	48936					-5.922275795455789E-05
SLREDVTRNL	10	Unmodified	_SLREDVTRNL_					0	0	0		ENSG00000142235|ENST00000600059|LMTK3	ENSG00000142235|ENST00000600059|LMTK3	ENSG00000142235|ENST00000600059|LMTK3	MSMS	A375_MHC_IP_R1	1	401.6450500488281	3	401.554443	1201.6415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.423	1	61.423	60.923	61.923	0								0	0	0	0.13403	1	22144	22144		22.775	8.5568	1				50101	5300	36440	36731	48937	48937					0.04874398932383883
SLREEQLHL	9	Unmodified	_SLREEQLHL_					0	0	0		ENSG00000172478|ENST00000388934|MAB21L4;nc|ENSG00000172478|Q08AI8-3|MAB21L4;nc|ENSG00000172478|Q08AI8-2|MAB21L4	ENSG00000172478|ENST00000388934|MAB21L4	ENSG00000172478|ENST00000388934|MAB21L4	MULTI-SECPEP	A375_MHC_IP_R1	1	375.2963562011719	3	375.540134	1123.59857	0.84495	0.00031731	-0.57168	-0.00021469	0.27327	0.00010262	375.53986481210114	49.09	0.55672	49.09	48.831	49.387	0					20	10	3	0	0	0	0.75842	1	17370	17370		13.042	13.042	1	2246000			50102	7714	36441	36732	48938	48938					0.04171628874951239
SLRELTFSL	9	Unmodified	_SLRELTFSL_					0	0	0			REV__nc|ENSG00000072195|Q15772-1|SPEG	REV__nc|ENSG00000072195|Q15772-1|SPEG	MULTI-SECPEP	A375_MHC_IP_R1	1	355.579345703125	3	355.86948	1064.58661	-0.038898	-1.3843E-05	-0.81696	-0.00029073	-0.85586	-0.00030457	355.8694305525697	28.346	0.35262	28.346	28.138	28.491	0					9	6	2	0	0	0	0.77948	1	8667	8667		10.151	2.5416	1	1110800	+		50103	16601	36442	36733	48939	48939					0.05690012131753974
SLRELWRQ	8	Unmodified	_SLRELWRQ_					0	0	0			REV__ENST00000549478.1_1_12:104350574-104350781:-|nuORF	REV__ENST00000549478.1_1_12:104350574-104350781:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	363.2922668457031	3	363.205085	1086.59343	0.14979	5.4405E-05	-0.59168	-0.0002149	-0.44189	-0.0001605	363.20485477666585	33.337	0.30581	33.337	33.19	33.496	0					9	5	2	0	0	0	0.972	1	10899	10899		6.2058	1.3088	1	1618500	+		50104	26029	36443	36734	48940	48940					0.053593698029771986
SLREMSSY	8	Unmodified	_SLREMSSY_					0	0	0			REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2	REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2	MSMS	A375_MHC_IP_R2	2	486.6670227050781	2	486.726392	971.438231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.412	1	62.157	61.657	62.657	0.74503								0	0	0	0.16876	1	23275	23275		13.508	0.97634	1		+		50105	16848	36444	36735	48941	48941					-0.04863042113595384
SLREVCQPAF	10	Unmodified	_SLREVCQPAF_					0	0	0		CPZ|p.G124S|1|0.46|ENSG00000109625|chr4:8601371-8601371|G/A|missense_variant	CPZ|p.G124S|1|0.46|ENSG00000109625|chr4:8601371-8601371|G/A|missense_variant	CPZ|p.G124S|1|0.46|ENSG00000109625|chr4:8601371-8601371|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	383.6178283691406	3	383.862219	1148.56483	-0.31531	-0.00012104	0.21783	8.3618E-05	-0.097478	-3.7418E-05	383.8621957524322	34.846	0.40338	35.61	35.425	35.829	0.76338					12	7	2	0	0	0	0.93194	1	12658	12658		0.50596	0	1	1445200			50106	656	36445	36736	48942	48942					-0.003511158884748511
SLRFKKKKKK	10	Unmodified	_SLRFKKKKKK_					0	0	0		ENST00000341776.6_1_6:15521185-15521434:+|nuORF	ENST00000341776.6_1_6:15521185-15521434:+|nuORF	ENST00000341776.6_1_6:15521185-15521434:+|nuORF	MSMS	A375_MHC_IP_R1	1	645.8983154296875	2	645.940257	1289.86596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.42	1	102.42	101.92	102.92	0								0	0	0	0.15591	1	37641	37641		1.6526	1.302	1				50107	10873	36446	36737	48943	48943					0.23262178544155176
SLRFLKREAKL	11	Unmodified	_SLRFLKREAKL_					0	0	0		ENSG00000197599|ENST00000389176|CCDC154	ENSG00000197599|ENST00000389176|CCDC154	ENSG00000197599|ENST00000389176|CCDC154	MULTI-SECPEP	A375_MHC_IP_R2	2	681.6295166015625	2	680.924803	1359.83505	-0.54111	-0.00036846	0.91238	0.00062126	0.37126	0.0002528	681.4259543712005	90.121	0.30499	90.853	90.648	90.953	0.7318					7	5	2	0	0	0	0.99985	1	34246	34246		0.23584	0.23584	1	774610			50108	9176	36447	36738	48944	48944					0.16952980439282328
SLRGEVVCST	10	Unmodified	_SLRGEVVCST_					0	0	0			REV__OR6B3|p.A311V|1|0.65|ENSG00000178586|chr2:240045141-240045141|G/A|missense_variant	REV__OR6B3|p.A311V|1|0.65|ENSG00000178586|chr2:240045141-240045141|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	525.7025146484375	2	525.766049	1049.51754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.18	1	80.18	79.68	80.68	0								0	0	0	0.15038	1	29273	29273		17.113	2.2746	1		+		50109	27693	36448	36739	48945	48945					-0.005233951594618702
SLRGGKRRRR	10	Unmodified	_SLRGGKRRRR_					0	0	0		ENST00000591269.1_1_18:13687790-13726416:-|nuORF	ENST00000591269.1_1_18:13687790-13726416:-|nuORF	ENST00000591269.1_1_18:13687790-13726416:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	414.99749755859375	3	414.597311	1240.7701	0.048688	2.0186E-05	0.79617	0.00033009	0.84486	0.00035028	414.59757227387104	135.56	0.40639	135.56	135.39	135.79	0					10	7	2	0	0	0	0.94941	1	52280	52280		1.5923	1.5923	1	1850000			50110	13794	36449	36740	48946	48946					0.15934843476634342
SLRGGQELLA	10	Unmodified	_SLRGGQELLA_					0	0	0			REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2	REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2	MULTI-SECPEP	A375_MHC_IP_R2	2	521.6900024414062	2	522.29583	1042.57711	-0.39672	-0.00020721	-1.5655	-0.00081766	-1.9622	-0.0010249	523.2990582968514	100.6	0.77034	101.36	101.03	101.8	0.76278					32	14	3	0	0	0	0.92227	1	38184	38184		13.042	5.7532	1	1955200	+		50111	21427	36450	36741	48947	48947					0.057522438462456194
SLRGKQESPDY	11	Unmodified	_SLRGKQESPDY_					0	0	0		ENST00000475890.5_1_12:53552117-53555118:-|nuORF;nc|ENSG00000139631|Q9Y600-2|CSAD;ENSG00000139631|ENST00000444623|CSAD;nc|ENSG00000139631|Q9Y600-3|CSAD	ENST00000475890.5_1_12:53552117-53555118:-|nuORF	ENST00000475890.5_1_12:53552117-53555118:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	639.7095947265625	2	640.317491	1278.62043	-0.86165	-0.00055173	0.15161	9.708E-05	-0.71004	-0.00045465	640.3174728060254	66.585	0.71519	67.321	66.983	67.698	0.73631					28	13	3	0	0	0	0.99331	1	25245	25245		2.7352	0	1	6097400			50112	5095	36451	36742	48948	48948					-0.007736111671420076
SLRGRAPL	8	Unmodified	_SLRGRAPL_					0	0	0		ENST00000566809.1_1_15:72523769-72523925:-|nuORF	ENST00000566809.1_1_15:72523769-72523925:-|nuORF	ENST00000566809.1_1_15:72523769-72523925:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	869.9302978515625	1	869.531561	868.524284	-0.64282	-0.00055895	-0.68096	-0.00059211	-1.3238	-0.0011511	869.5307669183555	147.39	0.14015	147.39	147.32	147.46	0					24	14	2	0	0	0	0.77861	1	56330	56330		0	0	1	112100			50113	13564	36452	36743	48949	48949					0.0847633057406938
SLRGRAPL	8	Unmodified	_SLRGRAPL_					0	0	0		ENST00000566809.1_1_15:72523769-72523925:-|nuORF	ENST00000566809.1_1_15:72523769-72523925:-|nuORF	ENST00000566809.1_1_15:72523769-72523925:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	869.531561	868.524284	-0.38731	-0.00033678	-0.55805	-0.00048524	-0.94536	-0.00082202	869.5313837228091	147.64	0.14447	147.66	147.59	147.74	0.019897	0.13339	6.6729E-05	NaN	0	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40615			50114	13564	36452	36743							0.0847633057406938
SLRGRKDV	8	Unmodified	_SLRGRKDV_					0	0	0		ENST00000603357.2_1_4:90032764-90032998:+|nuORF	ENST00000603357.2_1_4:90032764-90032998:+|nuORF	ENST00000603357.2_1_4:90032764-90032998:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	466.1775207519531	2	465.777608	929.540663	-0.059924	-2.7911E-05	0.25439	0.00011849	0.19446	9.0576E-05	465.7775581445018	106.42	1.1235	106.42	105.81	106.93	0					34	21	2	0	0	0	0.77123	1	39102	39102		14.582	14.582	1	1433100			50115	13896	36453	36744	48950	48950					0.07307411740168845
SLRGSRKR	8	Unmodified	_SLRGSRKR_					0	0	0		tr|U7T3E2|U7T3E2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00397PE=4SV=1	tr|U7T3E2|U7T3E2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00397PE=4SV=1	tr|U7T3E2|U7T3E2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00397PE=4SV=1	MSMS	A375_MHC_IP_R2	2	480.2019958496094	2	480.296499	958.578445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.59	1	133.76	133.26	134.26	0.16487								0	0	0	0.16876	1	52555	52555		8.5933	0	1				50116	29969	36454	36745	48951	48951					0.097499227256435
SLRGVSAL	8	Unmodified	_SLRGVSAL_					0	0	0			REV__ENST00000498694.1_1_1:41474453-41475914:+|nuORF	REV__ENST00000498694.1_1_1:41474453-41475914:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	402.14276123046875	2	401.742702	801.470852	-0.081141	-3.2598E-05	0.54212	0.00021779	0.46097	0.00018519	401.7428572339696	45.559	1.0119	45.559	44.878	45.89	0					40	19	3	0	0	0	0.73227	1	15916	15916		46.021	1.6139	1	13912000	+		50117	21095	36455	36746	48952	48952					0.06217533071549042
SLRHEERW	8	Unmodified	_SLRHEERW_					0	0	0			REV__ARHGEF5|p.S47F|1|0.26|ENSG00000050327|chr7:144362809-144362809|C/T|missense_variant	REV__ARHGEF5|p.S47F|1|0.26|ENSG00000050327|chr7:144362809-144362809|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	371.2646179199219	3	371.524707	1111.55229	0.032599	1.2111E-05	0.91084	0.0003384	0.94344	0.00035051	371.8579516388868	24.815	0.25451	25.459	25.364	25.619	0.64368					6	4	2	0	0	0	0.972	1	8196	8196		0	0	1	825370	+		50118	15443	36456	36747	48953	48953					0.0009760876350810577
SLRIFNLSL	9	Unmodified	_SLRIFNLSL_					0	0	0		DSCAM|p.S657F|1|0.17|ENSG00000171587|chr21:40312173-40312173|G/A|missense_variant	DSCAM|p.S657F|1|0.17|ENSG00000171587|chr21:40312173-40312173|G/A|missense_variant	DSCAM|p.S657F|1|0.17|ENSG00000171587|chr21:40312173-40312173|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	355.26953125	3	354.88172	1061.62333	-0.37162	-0.00013188	-0.12178	-4.3217E-05	-0.4934	-0.0001751	354.8816616497119	48.996	0.61185	49.753	49.434	50.046	0.75736					26	11	3	0	0	0	0.2487	1	18461	18461		32.037	6.0168	1	4842700			50119	806	36457	36748	48954	48954					0.09498308748334239
SLRKKTDHI	9	Unmodified	_SLRKKTDHI_					0	0	0		ENST00000472248.5_2_22:24828166-24828607:+|nuORF	ENST00000472248.5_2_22:24828166-24828607:+|nuORF	ENST00000472248.5_2_22:24828166-24828607:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	367.0923767089844	3	366.552374	1096.63529	0.08347	3.0596E-05	0.26784	9.8177E-05	0.35131	0.00012877	366.55241989043475	30.935	0.35423	31.654	31.467	31.821	0.71857					15	6	3	0	0	0	0.67483	1	10888	10888		14.405	8.2135	1	2466700			50120	12369	36458	36749	48955	48955					0.0908392549151813
SLRKLIILHLR	11	Unmodified	_SLRKLIILHLR_					0	0	0		LRRTM4|p.G155S|1|0.61|ENSG00000176204|chr2:77519406-77519406|C/T|missense_variant	LRRTM4|p.G155S|1|0.61|ENSG00000176204|chr2:77519406-77519406|C/T|missense_variant	LRRTM4|p.G155S|1|0.61|ENSG00000176204|chr2:77519406-77519406|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	681.6288452148438	2	681.458813	1360.90307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.365	1	98.121	97.621	98.621	0.75586								0	0	0	0.16354	1	36956	36956		0.30703	0.30703	1				50121	14323	36459	36750	48956	48956					0.23705850089936575
SLRKLVKK	8	Unmodified	_SLRKLVKK_					0	0	0			REV__ENSG00000126464|ENST00000418929|PRR12	REV__ENSG00000126464|ENST00000418929|PRR12	MULTI-SECPEP	A375_MHC_IP_R1	1	485.7190856933594	2	486.339844	970.665135	-0.58809	-0.00028601	0.31064	0.00015108	-0.27745	-0.00013493	486.33976649042495	30.024	0.30145	30.024	29.899	30.2	0					7	5	2	0	0	0	0.972	1	9449	9449		8.5933	0	1	3551800	+		50122	18386	36460	36751	48957	48957					0.1786290922751732
SLRLAEAL	8	Unmodified	_SLRLAEAL_					0	0	0			REV__ENSG00000176723|ENST00000315678|ZNF843	REV__ENSG00000176723|ENST00000315678|ZNF843	MULTI-MSMS	A375_MHC_IP_R2	2	437.1816711425781	2	436.763635	871.512717	-0.46568	-0.00020339	-0.025955	-1.1336E-05	-0.49164	-0.00021473	436.7635854255416	65.637	0.50813	66.375	66.121	66.629	0.73811					16	9	2	0	0	0	0.71318	1	24876	24876		30.637	0	1	1804500	+		50123	21414	36461	36752	48958	48958					0.071820887600893
SLRLEHVF	8	Unmodified	_SLRLEHVF_					0	0	0			REV__ENSG00000153395|ENST00000283415|LPCAT1	REV__ENSG00000153395|ENST00000283415|LPCAT1	MULTI-SECPEP	A375_MHC_IP_R2	2	501.2109680175781	2	500.782359	999.550165	-0.60274	-0.00030184	-0.26511	-0.00013276	-0.86785	-0.0004346	500.7823359134537	45.595	0.30223	46.36	46.15	46.453	0.76518					13	5	3	0	0	0	0.92636	1	17049	17049		16.942	10.219	1	2845200	+		50124	19840	36462	36753	48959	48959					0.050371800257153154
SLRLIRRFNAF	11	Unmodified	_SLRLIRRFNAF_					0	0	0			REV__ENSG00000072786|ENST00000176763|STK10	REV__ENSG00000072786|ENST00000176763|STK10	MULTI-SECPEP	A375_MHC_IP_R1	1	465.62725830078125	3	464.945606	1391.81499	0.19965	9.2824E-05	-0.47413	-0.00022044	-0.27448	-0.00012762	464.9454079267075	45.231	0.40466	45.231	44.98	45.384	0					11	7	2	0	0	0	1.0002	1	15840	15840		0.08335	0	1	812670	+		50125	16611	36463	36754	48960	48960					0.1347522949931772
SLRLIRRFNAF	11	Unmodified	_SLRLIRRFNAF_					0	0	0			REV__ENSG00000072786|ENST00000176763|STK10	REV__ENSG00000072786|ENST00000176763|STK10	MULTI-SECPEP	A375_MHC_IP_R2	2	465.6278076171875	3	464.945606	1391.81499	-0.53021	-0.00024652	-0.39919	-0.0001856	-0.9294	-0.00043212	465.2797153759678	44.241	0.40593	45.01	44.782	45.188	0.7691					11	7	2	0	0	0	1.0011	1	16545	16545		0.45452	0.046251	1	1984300	+		50126	16611	36463	36754	48961	48961					0.1347522949931772
SLRLLRKAARV	11	Unmodified	_SLRLLRKAARV_					0	0	0		ALS2|p.P493L|1|0.14|ENSG00000003393|chr2:201754665-201754665|G/A|missense_variant	ALS2|p.P493L|1|0.14|ENSG00000003393|chr2:201754665-201754665|G/A|missense_variant	ALS2|p.P493L|1|0.14|ENSG00000003393|chr2:201754665-201754665|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	641.8362426757812	2	641.925138	1281.83572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.5	1	124.5	124	125	0								0	0	0	0.16307	1	46911	46911		2.7352	0	1				50127	108	36464	36755	48962	48962					0.20607819878955524
SLRLPVPRPV	10	Unmodified	_SLRLPVPRPV_					0	0	0		ENST00000530142.5_1_8:145581690-145582740:-|nuORF	ENST00000530142.5_1_8:145581690-145582740:-|nuORF	ENST00000530142.5_1_8:145581690-145582740:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	379.2804260253906	3	378.576631	1132.70806	0.1706	6.4586E-05	-2.2877	-0.00086607	-2.1171	-0.00080148	378.57571612072246	32.984	0.6068	32.984	32.684	33.291	0					17	11	3	0	0	0	0.94587	1	10821	10821		0.69767	0.46182	1	1398600			50128	13145	36465	36756	48963	48963					0.1470167928491719
SLRLRGVPL	9	Unmodified	_SLRLRGVPL_					0	0	0			REV__ENST00000525063.2_2_11:10326682-10327306:+|nuORF	REV__ENST00000525063.2_2_11:10326682-10327306:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	505.7133483886719	2	505.827101	1009.63965	-0.34648	-0.00017526	-1.2068	-0.00061043	-1.5533	-0.00078569	505.8265730295832	59.88	0.45798	59.88	59.651	60.109	0					11	8	2	0	0	0	0.77834	1	21621	21621		4.756	0.42677	1	947300	+		50129	25763	36466	36757	48964	48964					0.13521434705069169
SLRLRRKPFL	10	Unmodified	_SLRLRRKPFL_					0	0	0		ENST00000374369.7_1_20:34025707-34025902:-|nuORF	ENST00000374369.7_1_20:34025707-34025902:-|nuORF	ENST00000374369.7_1_20:34025707-34025902:-|nuORF	MSMS	A375_MHC_IP_R2	2	643.00146484375	2	643.414406	1284.81426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.818	1	41.593	41.093	42.093	0.77451								0	0	0	0.15541	1	15126	15126		3.2813	0	1				50130	11251	36467	36758	48965	48965					0.18324434850251237
SLRMEFCI	8	Unmodified	_SLRMEFCI_					0	0	0			REV__nc|ENSG00000107862|Q92538-3|GBF1	REV__nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MSMS	A375_MHC_IP_R1	1	499.6816101074219	2	499.743531	997.472508	-0.19934	-9.9617E-05	1.2706	0.00063496	1.0712	0.00053534	499.7440636006295	110.03	0.9142	110.03	109.63	110.54	0					19	17	2	0	0	0	0.77488	1	40222	40222		13.508	13.508	1	622890	+		50131	17501	36468	36759	48966	48966					-0.026329172263558576
SLRMEFCI	8	Unmodified	_SLRMEFCI_					0	0	0			REV__nc|ENSG00000107862|Q92538-3|GBF1	REV__nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	499.743531	997.472508	-0.19934	-9.9617E-05	1.2706	0.00063496	1.0712	0.00053534	499.7440636006295	110.03	0.9142	110.03	109.63	110.54	0	-0.025446	3.2255E-05	NaN	13.508	19	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	622890	+		50132	17501	36468	36759							-0.026329172263558576
SLRMEFCI	8	Unmodified	_SLRMEFCI_					0	0	0			REV__nc|ENSG00000107862|Q92538-3|GBF1	REV__nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MATCH	A375_MHC_IP_R2	2		2	499.743531	997.472508	-0.47303	-0.00023639	1.1636	0.00058148	0.69052	0.00034508	500.2454753181268	109.33	0.86536	110.08	109.52	110.38	0.74683	0.025446	-7.47E-05	NaN	13.508	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	517880	+		50133	17501	36468	36759							-0.026329172263558576
SLRMVAWCSLF	11	Unmodified	_SLRMVAWCSLF_					0	0	0		ENST00000495155.5_1_17:19186396-19216987:+|nuORF	ENST00000495155.5_1_17:19186396-19216987:+|nuORF	ENST00000495155.5_1_17:19186396-19216987:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	656.81787109375	2	656.830669	1311.64678	-0.81814	-0.00053738	-1.1513	-0.00075624	-1.9695	-0.0012936	656.8300926347866	89.086	0.90674	89.818	89.178	90.085	0.7318					29	17	3	0	0	0	0.73135	2	33911	33911;33944		7.609	0.97858	1	3772900			50134	12700	36469	36760	48967;48968	48967					0.003426631989668749
SLRNYYEQW	9	Unmodified	_SLRNYYEQW_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-SECPEP	A375_MHC_IP_R1	1	630.1958618164062	2	629.796195	1257.57784	-0.91186	-0.00057429	0.28997	0.00018262	-0.6219	-0.00039167	629.7962728862213	67.12	0.61391	67.12	66.836	67.449	0					33	11	4	0	0	0	0.038931	1	24302	24302		100.09	100.09	1	16453000			50135	3793	36470	36761	48969	48969					-0.040649615047414045
SLRNYYEQW	9	Unmodified	_SLRNYYEQW_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-SECPEP	A375_MHC_IP_R2	2	630.1953125	2	629.796195	1257.57784	-0.94292	-0.00059385	0.30502	0.0001921	-0.63791	-0.00040175	629.7963213509767	66.502	0.56303	67.238	66.932	67.495	0.73631					28	10	3	0	0	0	0.025037	1	25153	25153		110.55	81.471	1	14281000			50136	3793	36470	36761	48970	48970					-0.040649615047414045
SLRPCTEVLF	10	Unmodified	_SLRPCTEVLF_					0	0	0		ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11	ENSG00000086200|ENST00000325324|IPO11	ENSG00000086200|ENST00000325324|IPO11	MULTI-MSMS	A375_MHC_IP_R1	1	582.723876953125	2	582.807716	1163.60088	-0.52596	-0.00030653	-0.73524	-0.00042851	-1.2612	-0.00073504	583.3084214862787	67.519	3.049	67.519	66.072	69.121	0					95	59	2	0	0	0	0.29801	1	24126	24126		40.239	5.8375	1	3734400			50137	1831	36471	36762	48971	48971					0.025623412883760466
SLRPEAHQY	9	Unmodified	_SLRPEAHQY_					0	0	0			REV__nc|ENSG00000116748|P23109-2|AMPD1	REV__nc|ENSG00000116748|P23109-2|AMPD1	MSMS	A375_MHC_IP_R1	1	550.6171875	2	550.777805	1099.54106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.827	1	61.827	61.327	62.327	0								0	0	0	0.15486	1	22308	22308		11.64	0	1		+		50138	17969	36472	36763	48972	48972					-0.004732133306333708
SLRPLKAPR	9	Unmodified	_SLRPLKAPR_					0	0	0			REV__ENST00000601004.1_1_19:23567552-23568092:+|nuORF	REV__ENST00000601004.1_1_19:23567552-23568092:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	519.6657104492188	2	519.33255	1036.65055	-0.60934	-0.00031645	-0.53417	-0.00027741	-1.1435	-0.00059386	519.3323463808571	42.775	0.35477	43.548	43.369	43.724	0.7724					9	6	2	0	0	0	0.81254	1	15869	15869		2.0598	0	1	1705200	+		50139	26505	36473	36764	48973	48973					0.13368837079337936
SLRPPLPSSGP	11	Unmodified	_SLRPPLPSSGP_					0	0	0			REV__nc|ENSG00000061938|Q07912-3|TNK2	REV__nc|ENSG00000061938|Q07912-3|TNK2	MULTI-MSMS	A375_MHC_IP_R1	1	555.2116088867188	2	554.31148	1106.60841	-0.65803	-0.00036475	-0.57297	-0.0003176	-1.231	-0.00068236	554.3112748209991	53.213	0.81087	53.213	52.744	53.555	0					44	15	4	0	0	0	0.62223	1	18914	18914		21.59	1.1756	1	9962100	+		50140	16453	36474	36765	48974	48974					0.059368168803075605
SLRQELAR	8	Unmodified	_SLRQELAR_					0	0	0		ENST00000344736.8_1_X:153594562-153594693:-|nuORF	ENST00000344736.8_1_X:153594562-153594693:-|nuORF	ENST00000344736.8_1_X:153594562-153594693:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	486.6919860839844	2	486.78289	971.551228	-0.25471	-0.00012399	0.19397	9.4419E-05	-0.060741	-2.9568E-05	486.78291065760993	118.82	0.9119	118.82	118.52	119.44	0					21	17	2	0	0	0	0.71451	1	43823	43823		30.225	3.3412	1	10319000			50141	10899	36475	36766	48975	48975					0.06431394394610379
SLRQELAR	8	Unmodified	_SLRQELAR_					0	0	0		ENST00000344736.8_1_X:153594562-153594693:-|nuORF	ENST00000344736.8_1_X:153594562-153594693:-|nuORF	ENST00000344736.8_1_X:153594562-153594693:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	486.78289	971.551228	-0.51262	-0.00024954	0.22579	0.00010991	-0.28684	-0.00013963	486.78293936603677	118.52	1.8785	119.13	118.59	120.47	0.60909	0.15206	1.2778E-05	NaN	30.225	49	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24755000			50142	10899	36475	36766							0.06431394394610379
SLRQIRKSPQR	11	Unmodified	_SLRQIRKSPQR_					0	0	0			REV__ENSG00000249693|ENST00000512175|THEGL	REV__ENSG00000249693|ENST00000512175|THEGL	MSMS	A375_MHC_IP_R2	2	684.8626708984375	2	684.912759	1367.81096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.69	1	124.02	123.52	124.52	0.32969								0	0	0	0.16258	1	47625	47625		5.2969	1.7004	1		+		50143	22837	36476	36767	48976	48976					0.14177140005585898
SLRQMWRYRSW	11	Unmodified	_SLRQMWRYRSW_					0	0	0		ENST00000528615.5_3_11:46366959-46391044:+|nuORF;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-7|DGKZ	ENST00000528615.5_3_11:46366959-46391044:+|nuORF	ENST00000528615.5_3_11:46366959-46391044:+|nuORF	MSMS	A375_MHC_IP_R2	2	784.8988647460938	2	784.898794	1567.78304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.619	1	81.364	80.864	81.864	0.74474								0	0	0	0.16339	1	30609	30609		1.0715	0.10919	1				50144	13120	36477	36768	48977	48977					0.02185493753836454
SLRQTLPL	8	Unmodified	_SLRQTLPL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R2	2	464.6490478515625	2	464.284734	926.554916	-0.6348	-0.00029473	0.39828	0.00018492	-0.23652	-0.00010981	464.28496555376586	67.052	0.96524	67.789	67.445	68.41	0.73631					23	18	2	0	0	0	0.92636	1	25350	25350		23.148	0	1	1059900	+		50145	19932	36478	36769	48978	48978					0.0887006416847953
SLRRGHEV	8	Unmodified	_SLRRGHEV_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	A375_MHC_IP_R2	2	477.6656188964844	2	477.267407	952.520262	-0.38354	-0.00018305	-2.4179	-0.001154	-2.8014	-0.001337	477.2663378746788	100.44	3.7689	101.2	100.07	103.84	0.76278					90	73	2	0	0	0	0.84748	1	38044	38044		21.747	10.106	1	3221200			50146	2058	36479	36770	48979	48979					0.04210241080374999
SLRRHRQMHEV	11	Unmodified	_SLRRHRQMHEV_					0	0	0		ENSG00000124444|ENST00000336564|ZNF576	ENSG00000124444|ENST00000336564|ZNF576	ENSG00000124444|ENST00000336564|ZNF576	MSMS	A375_MHC_IP_R2	2	483.6591491699219	3	483.593237	1447.75788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.319	1	80.064	79.564	80.564	0.74474								0	0	0	0.16316	1	30100	30100		2.2527	0.16672	1				50147	3900	36480	36771	48980	48980					0.05191438951260352
SLRRIKFAKA	10	Unmodified	_SLRRIKFAKA_					0	0	0			REV__nc|ENSG00000106536|P78424-2|POU6F2	REV__nc|ENSG00000106536|P78424-2|POU6F2	MULTI-SECPEP	A375_MHC_IP_R1	1	396.605224609375	3	397.25578	1188.74551	-0.2174	-8.6363E-05	0.57774	0.00022951	0.36034	0.00014315	397.2558636048425	65.275	0.40612	65.275	65.005	65.411	0					13	7	2	0	0	0	0.94961	1	23578	23578		0.50596	0.27011	1	619750	+		50148	17454	36481	36772	48981	48981					0.1586877055055993
SLRRLLRRRH	10	Unmodified	_SLRRLLRRRH_					0	0	0			REV__nc|ENSG00000185453|Q86XI8|ZSWIM9	REV__nc|ENSG00000185453|Q86XI8|ZSWIM9	MSMS	A375_MHC_IP_R1	1	681.9769287109375	2	681.936902	1361.85925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.94	1	123.94	123.44	124.44	0								0	0	0	0.1552	1	46444	46444		3.9444	0.94915	1		+		50149	21894	36482	36773	48982	48982					0.1927967843616898
SLRRQARRHL	10	Unmodified	_SLRRQARRHL_					0	0	0			REV__ENST00000164024.4_1_3:48692826-48693791:-|nuORF	REV__ENST00000164024.4_1_3:48692826-48693791:-|nuORF	MSMS	A375_MHC_IP_R2	2	646.8927001953125	2	646.892161	1291.76977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.18	1	21.799	21.299	22.299	0.61932								0	0	0	0.15591	1	6650	6650		1.6526	0	1		+		50150	23012	36483	36774	48983	48983					0.13555423756770324
SLRRRRKKSRR	11	Unmodified	_SLRRRRKKSRR_					0	0	0			REV__ENST00000421536.5_1_2:187351098-187359978:+|nuORF	REV__ENST00000421536.5_1_2:187351098-187359978:+|nuORF	MSMS	A375_MHC_IP_R2	2	749.9856567382812	2	749.984915	1497.95528	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.742	1	87.475	86.975	87.975	0.733								0	0	0	0.16334	1	32987	32987		1.3295	1.0225	1		+		50151	24592	36484	36775	48984	48984					0.2262182627623588
SLRRYDHSL	9	Unmodified	_SLRRYDHSL_					0	0	0			REV__ENST00000256951.9_1_12:13369392-13369428:+|nuORF	REV__ENST00000256951.9_1_12:13369392-13369428:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	383.2439880371094	3	382.871995	1145.59415	0.53337	0.00020421	0.50465	0.00019322	1.038	0.00039743	382.87183811649004	21.255	0.66044	21.255	20.844	21.505	0					23	12	3	0	0	0	0.64808	1	5636	5636		7.609	1.3746	1	3024500	+		50152	23156	36485	36776	48985	48985					0.027181644520169357
SLRSQVQPL	9	Unmodified	_SLRSQVQPL_					0	0	0			REV__ENST00000426449.5_1_1:2488090-2489827:+|nuORF	REV__ENST00000426449.5_1_1:2488090-2489827:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	514.697998046875	2	514.298373	1026.58219	-0.70484	-0.0003625	-0.092408	-4.7525E-05	-0.79724	-0.00041002	514.2986211402523	129.52	0.55745	129.52	129.4	129.95	0					14	10	2	0	0	0	0.65721	1	49852	49852		10.824	1.4408	1	6730800	+		50153	24653	36486	36777	48986	48986					0.0699654770885445
SLRSRCPPRPG	11	Unmodified	_SLRSRCPPRPG_					0	0	0			REV__ENST00000374695.7_1_1:22163424-22163481:-|nuORF	REV__ENST00000374695.7_1_1:22163424-22163481:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	409.6246337890625	3	409.224263	1224.65096	-0.10028	-4.1038E-05	0.73875	0.00030231	0.63846	0.00026127	409.2245863186463	34.129	0.80939	34.129	33.898	34.708	0					25	15	3	0	0	0	0.73135	1	11231	11231		3.8459	0	1	4493200	+		50154	24111	36487	36778	48987	48987					0.0476188873690262
SLRSSAVSFI	10	Unmodified	_SLRSSAVSFI_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	A375_MHC_IP_R1	1	534.1982421875	2	533.798206	1065.58186	-0.70216	-0.00037481	-0.13519	-7.2166E-05	-0.83735	-0.00044698	533.7981941852969	58.151	0.40491	58.151	57.974	58.379	0					16	7	3	0	0	0	0.83425	1	20913	20913		22.736	0	1	2235500	+		50155	21639	36488	36779	48988	48988					0.051691279890064834
SLRTCIIGV	9	Unmodified	_SLRTCIIGV_					0	0	0			REV__nc|ENSG00000103507|O14874-2|BCKDK	REV__nc|ENSG00000103507|O14874-2|BCKDK	MULTI-MSMS	A375_MHC_IP_R1	1	481.67852783203125	2	481.278595	960.542637	-0.072144	-3.4721E-05	-0.15112	-7.2731E-05	-0.22326	-0.00010745	481.27849715988015	69.623	2.7472	69.623	68.769	71.516	0					91	53	2	0	0	0	0.14922	1	25403	25403		41.84	12.758	1	2738700	+		50156	17282	36489	36780	48989	48989					0.060787044337757834
SLRTCIIGV	9	Unmodified	_SLRTCIIGV_					0	0	0			REV__nc|ENSG00000103507|O14874-2|BCKDK	REV__nc|ENSG00000103507|O14874-2|BCKDK	MULTI-SECPEP	A375_MHC_IP_R1	1	481.6785888671875	2	481.278595	960.542637	-0.37885	-0.00018233	0.1123	5.4048E-05	-0.26655	-0.00012828	481.2787345364964	89.488	0.65926	89.488	89.221	89.88	0					17	12	2	0	0	0	0.38578	1	32869	32869		34.402	0	1	2269900	+		50157	17282	36489	36780	48990	48990					0.060787044337757834
SLRTCIIGV	9	Unmodified	_SLRTCIIGV_					0	0	0			REV__nc|ENSG00000103507|O14874-2|BCKDK	REV__nc|ENSG00000103507|O14874-2|BCKDK	MULTI-SECPEP	A375_MHC_IP_R1	1	481.6785583496094	2	481.278595	960.542637	-0.59253	-0.00028517	0.20483	9.8583E-05	-0.3877	-0.00018659	481.2786724165924	66.538	0.86688	66.538	66.224	67.091	0					28	16	2	0	0	0	0.38578	1	24054	24054		34.402	0	1	11546000	+		50158	17282	36489	36780	48991	48991					0.060787044337757834
SLRTCIIGV	9	Unmodified	_SLRTCIIGV_					0	0	0			REV__nc|ENSG00000103507|O14874-2|BCKDK	REV__nc|ENSG00000103507|O14874-2|BCKDK	MULTI-SECPEP	A375_MHC_IP_R1	1	481.677978515625	2	481.278595	960.542637	-0.072144	-3.4721E-05	-0.15112	-7.2731E-05	-0.22326	-0.00010745	481.27849715988015	69.623	2.7472	69.623	68.769	71.516	0					91	53	2	0	0	0	0.56537	1	25138	25138		29.082	29.082	1	2738700	+		50159	17282	36489	36780	48992	48992					0.060787044337757834
SLRTCIIGV	9	Unmodified	_SLRTCIIGV_					0	0	0			REV__nc|ENSG00000103507|O14874-2|BCKDK	REV__nc|ENSG00000103507|O14874-2|BCKDK	MULTI-MSMS	A375_MHC_IP_R2	2	481.6785583496094	2	481.278595	960.542637	-0.48608	-0.00023394	-0.2761	-0.00013288	-0.76218	-0.00036682	481.2784548135241	69.787	2.435	70.521	69.018	71.453	0.73421					81	47	2	0	0	0	0.2487	1	26315	26315		34.402	11.665	1	1860700	+		50160	17282	36489	36780	48993	48993					0.060787044337757834
SLRTCIIGV	9	Unmodified	_SLRTCIIGV_					0	0	0			REV__nc|ENSG00000103507|O14874-2|BCKDK	REV__nc|ENSG00000103507|O14874-2|BCKDK	MULTI-SECPEP	A375_MHC_IP_R2	2	481.6784973144531	2	481.278595	960.542637	-0.48608	-0.00023394	-0.2761	-0.00013288	-0.76218	-0.00036682	481.2784548135241	69.787	2.435	70.521	69.018	71.453	0.73421					81	47	2	0	0	0	0.56537	1	26073	26073		22.736	22.736	1	1860700	+		50161	17282	36489	36780	48994	48994					0.060787044337757834
SLRTCIIGV	9	Unmodified	_SLRTCIIGV_					0	0	0			REV__nc|ENSG00000103507|O14874-2|BCKDK	REV__nc|ENSG00000103507|O14874-2|BCKDK	MULTI-SECPEP	A375_MHC_IP_R2	2	481.66217041015625	2	481.278595	960.542637	-0.7179	-0.00034551	0.16055	7.7269E-05	-0.55735	-0.00026824	481.2786451811395	65.459	0.86335	66.197	65.867	66.731	0.73811					29	16	2	0	0	0	0.24324	1	24880	24880		45.7	9.2335	1	14880000	+		50162	17282	36489	36780	48995	48995					0.060787044337757834
SLRVAGRPVKK	11	Unmodified	_SLRVAGRPVKK_					0	0	0		ENST00000437944.5_1_2:175260481-175263028:+|nuORF	ENST00000437944.5_1_2:175260481-175263028:+|nuORF	ENST00000437944.5_1_2:175260481-175263028:+|nuORF	MSMS	A375_MHC_IP_R1	1	404.2623291015625	3	404.262935	1209.76697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.904	1	67.904	67.404	68.404	0								0	0	0	0.16338	1	24612	24612		1.1098	0.41209	1				50163	11945	36490	36781	48996	48996					0.17048155579254853
SLRVCILRCV	10	Unmodified	_SLRVCILRCV_					0	0	0			REV__ENST00000326764.9_2_19:54972187-54972391:+|nuORF	REV__ENST00000326764.9_2_19:54972187-54972391:+|nuORF	MSMS	A375_MHC_IP_R2	2	581.3206787109375	2	581.333378	1160.6522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.116	1	92.855	92.355	93.355	0.73902								0	0	0	0.15353	1	35034	35034		9.3831	0	1		+		50164	23605	36491	36782	48997	48997					0.07830386781438392
SLRVPPSDM	9	Unmodified	_SLRVPPSDM_					0	0	0			REV__ENST00000367657.7_1_1:176853624-176857243:-|nuORF	REV__ENST00000367657.7_1_1:176853624-176857243:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.6575927734375	2	501.257859	1000.50117	-0.27791	-0.00013931	0.77042	0.00038618	0.4925	0.00024687	501.257741580555	72.784	0.96364	72.784	72.22	73.184	0					37	18	3	0	0	0	0.39434	1	26551	26551		24.991	8.0487	1	1319900	+		50165	23977	36492	36783	48998	48998					0.0009352367444535048
SLRVPPSDM	9	Unmodified	_SLRVPPSDM_					0	0	0			REV__ENST00000367657.7_1_1:176853624-176857243:-|nuORF	REV__ENST00000367657.7_1_1:176853624-176857243:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	501.6575622558594	2	501.257859	1000.50117	-0.82538	-0.00041373	0.67276	0.00033723	-0.15262	-7.6502E-05	501.257800396927	72.004	0.86208	72.738	72.414	73.276	0.73421					30	16	3	0	0	0	0.39434	1	27362	27362		24.991	8.0487	1	1774800	+		50166	23977	36492	36783	48999	48999					0.0009352367444535048
SLRVPSPAL	9	Unmodified	_SLRVPSPAL_					0	0	0		ENST00000474290.1_1_15:44069338-44069488:+|nuORF	ENST00000474290.1_1_15:44069338-44069488:+|nuORF	ENST00000474290.1_1_15:44069338-44069488:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	470.6842041015625	2	470.284734	938.554916	-0.68403	-0.00032169	0.053841	2.5321E-05	-0.63019	-0.00029637	470.2847130627327	55.461	1.3746	56.212	55.881	57.256	0.75075					64	26	4	0	0	0	0.13845	1	21116	21116		43.772	5.5968	1	74117000			50167	12401	36493	36784	49000	49000					0.08318064168463479
SLRWLFNGSVL	11	Unmodified	_SLRWLFNGSVL_					0	0	0		nc|ENSG00000198400|P04629-4|NTRK1;nc|ENSG00000198400|P04629-3|NTRK1;nc|ENSG00000198400|P04629-2|NTRK1;ENSG00000198400|ENST00000524377|NTRK1;ENST00000530298.5_1_1:156807654-156845592:+|nuORF	nc|ENSG00000198400|P04629-4|NTRK1	nc|ENSG00000198400|P04629-4|NTRK1	MULTI-MSMS	A375_MHC_IP_R1	1	431.2879943847656	3	431.243429	1290.70846	-0.23751	-0.00010243	0.041324	1.7821E-05	-0.19619	-8.4604E-05	431.24344374754907	76.697	0.45782	76.697	76.421	76.878	0					13	8	2	0	0	0	0.72713	1	27888	27888		11.631	2.0874	1	2903800			50168	9266	36494	36785	49001	49001					0.07473054214119657
SLRWYKELFKH	11	Unmodified	_SLRWYKELFKH_					0	0	0		tr|U7T303|U7T303_FUSNUSpermidine/putrescinetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00344PE=3SV=1	tr|U7T303|U7T303_FUSNUSpermidine/putrescinetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00344PE=3SV=1	tr|U7T303|U7T303_FUSNUSpermidine/putrescinetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00344PE=3SV=1	MSMS	A375_MHC_IP_R1	1	753.9149169921875	2	753.914436	1505.81432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.114	1	56.114	55.614	56.614	0								0	0	0	0.16334	1	20095	20095		1.3295	0	1				50169	29951	36495	36786	49002	49002					0.08164390059573634
SLSANVYGV	9	Unmodified	_SLSANVYGV_					0	0	0			REV__nc|ENSG00000151572|Q32M45-3|ANO4	REV__nc|ENSG00000151572|Q32M45-3|ANO4	MULTI-SECPEP	A375_MHC_IP_R1	1	455.63720703125	2	455.23745	908.460347	-0.29633	-0.0001349	-0.31722	-0.00014441	-0.61356	-0.00027931	455.2372501540914	34.532	0.30401	34.532	34.353	34.657	0					8	5	2	0	0	0	0.4261	1	11431	11431		30.637	11.38	1	1805800	+		50170	15684	36496	36787	49003	49003					0.002455056264693667
SLSANVYGV	9	Unmodified	_SLSANVYGV_					0	0	0			REV__nc|ENSG00000151572|Q32M45-3|ANO4	REV__nc|ENSG00000151572|Q32M45-3|ANO4	MULTI-MATCH	A375_MHC_IP_R2	2		2	455.23745	908.460347	-0.7349	-0.00033455	0.79024	0.00035975	0.055346	2.5196E-05	455.2377754447838	33.822	0.30367	34.575	34.399	34.702	0.75225	0.021329	0.00068864	NaN	30.637	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1120900	+		50171	15684	36496	36787							0.002455056264693667
SLSDDDDLGW	10	Unmodified	_SLSDDDDLGW_					0	0	0		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	374.9453430175781	3	374.824376	1121.4513	0.51595	0.00019339	-0.64268	-0.00024089	-0.12673	-4.7503E-05	375.15807411651394	45.729	0.65972	45.729	45.434	46.094	0					23	12	3	0	0	0	0.93615	1	15918	15918		3.8763	0.28927	1	2277900			50172	2645	36497	36788	49004	49004					-0.10456932520537521
SLSDHIVLL	9	Unmodified	_SLSDHIVLL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	A375_MHC_IP_R1	1	499.6910400390625	2	498.78985	995.565146	-0.38567	-0.00019237	0.18591	9.273E-05	-0.19976	-9.964E-05	498.7899676602305	95.993	2.5363	95.993	95.614	98.151	0					146	49	5	0	0	0	0.026461	1	35227	35227		77.984	10.64	1	321770000			50173	903	36498	36789	49005	49005					0.06718627103043673
SLSDHIVLL	9	Unmodified	_SLSDHIVLL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MSMS	A375_MHC_IP_R1	1	498.83551025390625	2	498.78985	995.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.811	1	97.811	97.311	98.311	0								0	0	0	0.033426	1	35934	35934		64.236	10.661	1				50174	903	36498	36789	49006	49006					0.06718627103043673
SLSDHIVLL	9	Unmodified	_SLSDHIVLL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-SECPEP	A375_MHC_IP_R1	1	499.1202392578125	2	498.78985	995.565146	-0.39312	-0.00019608	0.20225	0.00010088	-0.19086	-9.52E-05	498.7899420075902	99.599	0.60671	99.599	99.067	99.673	0					16	11	2	0	0	0	0.55359	1	36602	36602		15.847	0	1	1016200			50175	903	36498	36789	49007	49007					0.06718627103043673
SLSDHIVLL	9	Unmodified	_SLSDHIVLL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	A375_MHC_IP_R2	2	499.1896667480469	2	498.78985	995.565146	-0.28661	-0.00014296	-0.025325	-1.2632E-05	-0.31194	-0.00015559	498.7898521039142	95.01	3.1474	95.76	95.432	98.579	0.75045					161	61	5	0	0	0	0.018481	1	36432	36432		85.357	27.885	1	349210000			50176	903	36498	36789	49008	49008					0.06718627103043673
SLSDKTPSV	9	Unmodified	_SLSDKTPSV_					0	0	0		ENSG00000113716|ENST00000502717|HMGXB3	ENSG00000113716|ENST00000502717|HMGXB3	ENSG00000113716|ENST00000502717|HMGXB3	MULTI-SECPEP	A375_MHC_IP_R1	1	467.15289306640625	2	467.248015	932.481476	-0.57055	-0.00026659	-0.6082	-0.00028418	-1.1788	-0.00055077	467.24764293175207	30.7	0.55604	30.7	30.453	31.009	0					13	10	2	0	0	0	0.33896	1	9768	9768		47.594	7.6447	1	1447100			50177	3175	36499	36790	49009	49009					0.012534709353417384
SLSDLTIESP	10	Unmodified	_SLSDLTIESP_					0	0	0		nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC;nc|ENSG00000134982|P25054-2|APC	nc|ENSG00000134982|P25054-3|APC	nc|ENSG00000134982|P25054-3|APC	MULTI-SECPEP	A375_MHC_IP_R1	1	354.9174499511719	3	354.516883	1060.52882	-0.01751	-6.2078E-06	1.6763	0.00059428	1.6588	0.00058807	354.5173795173885	20.093	0.3545	20.093	19.928	20.283	0					11	6	2	0	0	0	0.93194	1	5137	5137		1.4551	0	1	1594100			50178	4632	36500	36791	49010	49010					0.0009770541569196212
SLSDQTLEV	9	Unmodified	_SLSDQTLEV_					0	0	0		nc|ENSG00000106477|Q9BYV8-2|CEP41;SEMA3E-CEP41|1|fusion;ENSG00000106477|ENST00000223208|CEP41;SEMA3E-CEP41|2|fusion;nc|ENSG00000106477|Q9BYV8-5|CEP41;ENST00000498527.5_1_7:130050951-130080846:-|nuORF	nc|ENSG00000106477|Q9BYV8-2|CEP41	nc|ENSG00000106477|Q9BYV8-2|CEP41	MULTI-MSMS	A375_MHC_IP_R1	1	496.2026062011719	2	496.250754	990.486955	-0.15259	-7.5724E-05	0.028766	1.4275E-05	-0.12383	-6.1449E-05	496.2505047805339	71.92	0.4545	71.92	71.715	72.169	0					13	8	2	0	0	0	0.32899	1	26162	26162		28.487	6.7402	1	1258800			50179	2693	36501	36792	49011	49011					-0.00866850272859665
SLSDRGISW	9	Unmodified	_SLSDRGISW_					0	0	0			REV__ENST00000573523.5_1_17:4574736-4578861:-|nuORF	REV__ENST00000573523.5_1_17:4574736-4578861:-|nuORF	MSMS	A375_MHC_IP_R2	2	510.6665344238281	2	510.759081	1019.50361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.818	1	55.569	55.069	56.069	0.75075								0	0	0	0.15486	1	20695	20695		12.532	0	1		+		50180	19269	36502	36793	49012	49012					-0.005363045962326396
SLSDSLFVL	9	Unmodified	_SLSDSLFVL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-SECPEP	A375_MHC_IP_R1	1	981.3075561523438	1	980.529889	979.522613	-0.070425	-6.9054E-05	0.2421	0.00023738	0.17167	0.00016833	980.5300185067116	131.2	0.25171	131.2	131.07	131.33	0					9	4	3	0	0	0	0.10969	1	50620	50620		57.471	9.1255	1	16692000			50181	9204	36503	36794	49013	49013					0.03203231974816845
SLSDSLFVL	9	Unmodified	_SLSDSLFVL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MATCH	A375_MHC_IP_R2	2		1	980.529889	979.522613	-0.0010964	-1.075E-06	0.27032	0.00026505	0.26922	0.00026398	980.5301174296551	131.02	0.20273	131.24	131.11	131.31	0.2142	0.018422	8.3006E-06	NaN	57.471	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14202000			50182	9204	36503	36794							0.03203231974816845
SLSDYSLLY	9	Unmodified	_SLSDYSLLY_					0	0	0			REV__nc|ENSG00000008083|Q92833-2|JARID2	REV__nc|ENSG00000008083|Q92833-2|JARID2	MSMS	A375_MHC_IP_R1	1	530.7313232421875	2	530.763497	1059.51244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.979	1	98.979	98.479	99.479	0								0	0	0	0.15069	1	36362	36362		20.454	1.1966	1		+		50183	16165	36504	36795	49014	49014					-0.014933757504195455
SLSEDRSV	8	Unmodified	_SLSEDRSV_					0	0	0		CON__Q2YDI2	CON__Q2YDI2	CON__Q2YDI2	MULTI-SECPEP	A375_MHC_IP_R1	1	447.1215515136719	2	446.722164	891.429775	-0.31835	-0.00014222	-0.80369	-0.00035903	-1.122	-0.00050124	446.72174490491994	90.901	0.70903	90.901	90.641	91.35	0					26	13	3	0	0	0	0.97144	1	33380	33380		5.2307	0	1	3271400		+	50184	615	36505	36796	49015	49015					-0.020282727585708926
SLSEECYWSP	10	Unmodified	_SLSEECYWSP_					0	0	0		ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENST00000491786.5_1_2:47205894-47301059:+|nuORF;ENST00000484061.5_1_2:47221411-47251446:+|nuORF	ENSG00000068724|ENST00000319190|TTC7A	ENSG00000068724|ENST00000319190|TTC7A	MULTI-MSMS	A375_MHC_IP_R1	1	601.1471557617188	2	600.747521	1199.48049	-0.49402	-0.00029678	-0.92372	-0.00055492	-1.4177	-0.00085171	600.7470422494065	39.515	0.40555	39.515	39.289	39.694	0					13	7	2	0	0	0	0.71245	1	13547	13547		6.7232	0	1	4112800			50185	1463	36506	36797	49016	49016					-0.11127111495875397
SLSEECYWSP	10	Unmodified	_SLSEECYWSP_					0	0	0		ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENST00000491786.5_1_2:47205894-47301059:+|nuORF;ENST00000484061.5_1_2:47221411-47251446:+|nuORF	ENSG00000068724|ENST00000319190|TTC7A	ENSG00000068724|ENST00000319190|TTC7A	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	600.747521	1199.48049	-0.49402	-0.00029678	-0.92372	-0.00055492	-1.4177	-0.00085171	600.7470422494065	39.515	0.40555	39.515	39.289	39.694	0	0.0098513	1.865E-05	NaN	6.7232	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4112800			50186	1463	36506	36797							-0.11127111495875397
SLSEECYWSP	10	Unmodified	_SLSEECYWSP_					0	0	0		ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENST00000491786.5_1_2:47205894-47301059:+|nuORF;ENST00000484061.5_1_2:47221411-47251446:+|nuORF	ENSG00000068724|ENST00000319190|TTC7A	ENSG00000068724|ENST00000319190|TTC7A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	600.747521	1199.48049	-0.81032	-0.0004868	-0.94438	-0.00056734	-1.7547	-0.0010541	600.7469481163172	38.721	0.40781	39.496	39.3	39.708	0.77451	-0.0098513	-6.1749E-06	NaN	6.7232	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3310000			50187	1463	36506	36797							-0.11127111495875397
SLSEEPLLQI	10	Unmodified	_SLSEEPLLQI_					0	0	0			REV__nc|ENSG00000135637|Q17RM4-3|CCDC142	REV__nc|ENSG00000135637|Q17RM4-3|CCDC142	MULTI-SECPEP	A375_MHC_IP_R1	1	565.0487060546875	2	564.810979	1127.6074	-0.61459	-0.00034712	2.8553	0.0016127	2.2407	0.0012656	565.3156521649288	85.896	0.15248	85.896	85.819	85.971	0					4	2	2	0	0	0	0.85226	1	31486	31486		20.454	13.164	1	687990	+		50188	18872	36507	36798	49017	49017					0.04870557720778379
SLSEKQYFL	9	Unmodified	_SLSEKQYFL_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-SECPEP	A375_MHC_IP_R1	1	557.6783447265625	2	557.792589	1113.57063	-0.88337	-0.00049274	0.4771	0.00026612	-0.40628	-0.00022662	557.7927447891302	67.572	1.3716	67.572	67.143	68.514	0					70	26	3	0	0	0	0.011357	1	24550	24550		114.2	45.097	1	26805000			50189	2701	36508	36799	49018	49018					0.01838305894852965
SLSEKQYFL	9	Unmodified	_SLSEKQYFL_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-SECPEP	A375_MHC_IP_R2	2	558.1116943359375	2	557.792589	1113.57063	-0.82439	-0.00045984	0.10672	5.9525E-05	-0.71768	-0.00040031	557.7926689896879	66.682	1.5264	67.419	67.035	68.562	0.73631					111	29	6	0	0	0	0.011066	1	25290	25290		125.53	62.956	1	28449000			50190	2701	36508	36799	49019	49019					0.01838305894852965
SLSEKSPEV	9	Unmodified	_SLSEKSPEV_					0	0	0		ENST00000439173.1_X:151928157-151928639:+|nuORF	ENST00000439173.1_X:151928157-151928639:+|nuORF	ENST00000439173.1_X:151928157-151928639:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	487.9774475097656	2	488.253297	974.492041	-0.57253	-0.00027954	-0.59936	-0.00029264	-1.1719	-0.00057218	488.2529203197841	26.749	0.55386	26.749	26.474	27.027	0					17	10	2	0	0	0	0.076731	1	7961	7961		71.708	3.8697	1	2896400			50191	11958	36509	36800	49020	49020					0.0037745358977190335
SLSEKSPEV	9	Unmodified	_SLSEKSPEV_					0	0	0		ENST00000439173.1_X:151928157-151928639:+|nuORF	ENST00000439173.1_X:151928157-151928639:+|nuORF	ENST00000439173.1_X:151928157-151928639:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	488.6529846191406	2	488.253297	974.492041	-0.99397	-0.00048531	-2.0636	-0.0010076	-3.0576	-0.0014929	488.2523040961029	26.153	0.76235	26.813	26.347	27.109	0.65992					21	14	2	0	0	0	0.027818	1	8828	8828		76.825	10.368	1	2538300			50192	11958	36509	36800	49021	49021					0.0037745358977190335
SLSELQGWVD	10	Unmodified	_SLSELQGWVD_					0	0	0			REV__ENST00000467496.5_1_X:129474252-129484631:+|nuORF	REV__ENST00000467496.5_1_X:129474252-129484631:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	567.6761474609375	2	567.277303	1132.54005	-0.38369	-0.00021766	0.05257	2.9822E-05	-0.33112	-0.00018784	567.277152681022	43.884	0.61233	43.884	43.655	44.267	0					13	11	2	0	0	0	0.24808	1	15282	15282		47.594	23.805	1	4572700	+		50193	25056	36510	36801	49022	49022					-0.020914724902013404
SLSELQGWVD	10	Unmodified	_SLSELQGWVD_					0	0	0			REV__ENST00000467496.5_1_X:129474252-129484631:+|nuORF	REV__ENST00000467496.5_1_X:129474252-129484631:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	567.6768798828125	2	567.277303	1132.54005	-0.27437	-0.00015564	-1.0819	-0.00061373	-1.3562	-0.00076937	567.2764079043286	43.11	0.50636	43.882	43.573	44.079	0.7724					16	9	2	0	0	0	0.24808	1	16076	16076		47.594	20.371	1	3457900	+		50194	25056	36510	36801	49023	49023					-0.020914724902013404
SLSENQSLL	9	Unmodified	_SLSENQSLL_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;ENST00000313432.5_1_12:110783758-110784272:+|nuORF;nc|ENSG00000196296|O14983|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983-3|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000196296|O14983|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-SECPEP	A375_MHC_IP_R1	1	496.15924072265625	2	495.758746	989.50294	-0.19983	-9.9067E-05	0.30212	0.00014978	0.10229	5.0709E-05	495.75891709269916	69.147	0.96481	69.147	68.31	69.275	0					27	18	2	0	0	0	0.4261	1	25016	25016		37.974	18.717	1	2263600			50195	7877;9024	36511	36802	49024	49024					0.007768559640567219
SLSENREW	8	Unmodified	_SLSENREW_					0	0	0			REV__ENSG00000154493|ENST00000488181|C10orf90	REV__ENSG00000154493|ENST00000488181|C10orf90	MULTI-MSMS	A375_MHC_IP_R1	1	511.1770324707031	2	510.740888	1019.46722	-0.053222	-2.7182E-05	-0.49033	-0.00025043	-0.54356	-0.00027762	510.7406429226624	38.928	0.50804	38.928	38.679	39.187	0					21	9	3	0	0	0	0.72008	1	13235	13235		28.487	0.85804	1	4028900	+		50196	19887	36512	36803	49025	49025					-0.04173181492956246
SLSENREW	8	Unmodified	_SLSENREW_					0	0	0			REV__ENSG00000154493|ENST00000488181|C10orf90	REV__ENSG00000154493|ENST00000488181|C10orf90	MULTI-SECPEP	A375_MHC_IP_R1	1	511.1406555175781	2	510.740888	1019.46722	-0.053222	-2.7182E-05	-0.49033	-0.00025043	-0.54356	-0.00027762	510.7406429226624	38.928	0.50804	38.928	38.679	39.187	0					21	9	3	0	0	0	0.84748	1	13258	13258		28.487	0	1	4028900	+		50197	19887	36512	36803	49026	49026					-0.04173181492956246
SLSETRKIF	9	Unmodified	_SLSETRKIF_					0	0	0		nc|ENSG00000110931|Q96RR4-7|CAMKK2;nc|ENSG00000110931|Q96RR4-6|CAMKK2;nc|ENSG00000110931|Q96RR4-5|CAMKK2;nc|ENSG00000110931|Q96RR4-2|CAMKK2;nc|ENSG00000110931|Q96RR4-3|CAMKK2;nc|ENSG00000110931|Q96RR4-4|CAMKK2;ENSG00000110931|ENST00000404169|CAMKK2	nc|ENSG00000110931|Q96RR4-7|CAMKK2	nc|ENSG00000110931|Q96RR4-7|CAMKK2	MULTI-SECPEP	A375_MHC_IP_R1	1	540.17431640625	2	540.806031	1079.59751	-0.61557	-0.00033291	1.5541	0.00084045	0.9385	0.00050754	540.8067254234445	79.613	0.513	79.613	79.47	79.983	0					13	9	2	0	0	0	0.55359	1	29197	29197		21.747	0	1	766350			50198	14541	36513	36804	49027	49027					0.060894145060501614
SLSETRKIF	9	Unmodified	_SLSETRKIF_					0	0	0		nc|ENSG00000110931|Q96RR4-7|CAMKK2;nc|ENSG00000110931|Q96RR4-6|CAMKK2;nc|ENSG00000110931|Q96RR4-5|CAMKK2;nc|ENSG00000110931|Q96RR4-2|CAMKK2;nc|ENSG00000110931|Q96RR4-3|CAMKK2;nc|ENSG00000110931|Q96RR4-4|CAMKK2;ENSG00000110931|ENST00000404169|CAMKK2	nc|ENSG00000110931|Q96RR4-7|CAMKK2	nc|ENSG00000110931|Q96RR4-7|CAMKK2	MULTI-MATCH	A375_MHC_IP_R2	2		2	540.806031	1079.59751	-0.76851	-0.00041562	2.2813	0.0012337	1.5128	0.00081811	540.8066328335259	78.871	0.25487	79.616	79.387	79.642	0.74474	0.0014949	0.00042985	NaN	21.747	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	890390			50199	14541	36513	36804							0.060894145060501614
SLSETVKKV	9	Unmodified	_SLSETVKKV_					0	0	0		nc|ENSG00000156535|Q6YHK3-2|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	MULTI-SECPEP	A375_MHC_IP_R1	1	496.1948547363281	2	495.795132	989.575711	-0.57766	-0.0002864	0.018438	9.1414E-06	-0.55922	-0.00027726	495.7949734674134	24.224	0.50546	24.224	24.092	24.597	0					14	9	3	0	0	0	0.016541	1	6855	6855		96.936	53.163	1	17671000			50200	6199	36514	36805	49028	49028					0.08050609757481197
SLSETVKKV	9	Unmodified	_SLSETVKKV_					0	0	0		nc|ENSG00000156535|Q6YHK3-2|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	MULTI-SECPEP	A375_MHC_IP_R2	2	496.1947021484375	2	495.795132	989.575711	-0.75808	-0.00037585	0.049348	2.4467E-05	-0.70873	-0.00035139	495.7951315415376	23.524	0.30335	24.155	23.979	24.283	0.63014					10	5	2	0	0	0	0.011357	1	7592	7592		114.2	55.523	1	12736000			50201	6199	36514	36805	49029	49029					0.08050609757481197
SLSEYFSTF	9	Unmodified	_SLSEYFSTF_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MSMS	A375_MHC_IP_R1	1	540.7080078125	2	540.747847	1079.48114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.714	1	96.714	96.214	97.214	0								0	0	0	0.15283	1	35540	35540		16.942	6.8684	1				50202	2747	36515	36806	49030	49030					-0.0554194878452563
SLSFDYDYY	9	Unmodified	_SLSFDYDYY_					0	0	0			REV__LUM|p.P26S|1|0.33|ENSG00000139329|chr12:91108904-91108904|G/A|missense_variant	REV__LUM|p.P26S|1|0.33|ENSG00000139329|chr12:91108904-91108904|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	587.143310546875	2	586.742762	1171.47097	-0.74813	-0.00043896	1.6205	0.00095082	0.87237	0.00051186	586.7442703186568	97.075	0.70927	97.831	97.469	98.178	0.75586					29	13	3	0	0	0	0.43185	1	36824	36824		23.148	0.41214	1	3961900	+		50203	26969	36516	36807	49031	49031					-0.10790556509778071
SLSFNLGIW	9	Unmodified	_SLSFNLGIW_					0	0	0			REV__ENSG00000111796|ENST00000229402|KLRB1	REV__ENSG00000111796|ENST00000229402|KLRB1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.176513671875	2	518.776742	1035.53893	-0.69778	-0.00036199	-4.3403	-0.0022516	-5.0381	-0.0026136	519.2748938051375	67.325	0.76231	68.062	67.648	68.41	0.73631					32	14	3	0	0	0	0.50702	1	25463	25463		19.257	0	1	3792600	+		50204	17694	36517	36808	49032	49032					0.022583579315551106
SLSFPLLFFWW	11	Unmodified	_SLSFPLLFFWW_					0	0	0			REV__ENST00000357103.4_1_12:1895563-1895707:+|nuORF	REV__ENST00000357103.4_1_12:1895563-1895707:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	722.2772216796875	2	721.878999	1441.74344	-0.84126	-0.00060728	-1.444	-0.0010424	-2.2853	-0.0016497	721.8780804184497	67.029	0.40932	67.029	66.785	67.194	0					12	7	2	0	0	0	0.72565	1	24326	24326		13.042	4.0662	1	1788100	+		50205	23840	36518	36809	49033	49033					0.040242970220788266
SLSFPLLFFWW	11	Unmodified	_SLSFPLLFFWW_					0	0	0			REV__ENST00000357103.4_1_12:1895563-1895707:+|nuORF	REV__ENST00000357103.4_1_12:1895563-1895707:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	721.878999	1441.74344	-0.84126	-0.00060728	-1.444	-0.0010424	-2.2853	-0.0016497	721.8780804184497	67.029	0.40932	67.029	66.785	67.194	0	-0.033982	0.00015554	NaN	13.042	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1788100	+		50206	23840	36518	36809							0.040242970220788266
SLSFPLLFFWW	11	Unmodified	_SLSFPLLFFWW_					0	0	0			REV__ENST00000357103.4_1_12:1895563-1895707:+|nuORF	REV__ENST00000357103.4_1_12:1895563-1895707:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	721.878999	1441.74344	-0.92294	-0.00066625	-1.5882	-0.0011465	-2.5111	-0.0018127	721.8778508028025	66.36	0.45985	67.097	66.882	67.342	0.73631	0.033982	-5.2623E-05	NaN	13.042	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1469000	+		50207	23840	36518	36809							0.040242970220788266
SLSFYGPV	8	Unmodified	_SLSFYGPV_					0	0	0			REV__CD300C|p.P24S|1|0.31|ENSG00000167850|chr17:74544939-74544939|G/A|missense_variant	REV__CD300C|p.P24S|1|0.31|ENSG00000167850|chr17:74544939-74544939|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	435.2823181152344	2	435.223811	868.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.674	1	79.674	79.174	80.174	0								0	0	0	0.16876	1	29085	29085		5.2307	0.47466	1		+		50208	15612	36519	36810	49034	49034					-0.006409779139062266
SLSGELREV	9	Unmodified	_SLSGELREV_					0	0	0		nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	MULTI-SECPEP	A375_MHC_IP_R1	1	495.65625	2	495.266739	988.518924	-0.083556	-4.1383E-05	-0.22929	-0.00011356	-0.31285	-0.00015494	495.2665914960905	49.666	1.1728	49.666	49.235	50.408	0					65	22	5	0	0	0	0.044425	1	17520	17520		96.936	22.736	1	70022000			50209	1309	36520	36811	49035	49035					0.024205622009503713
SLSGGKGF	8	Unmodified	_SLSGGKGF_					0	0	0		nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.P821S|1|0.29|ENSG00000144824|chr3:111945331-111945331|C/T|missense_variant;ENST00000491694.1_1_3:111658417-111664240:+|nuORF	nc|ENSG00000144824|Q86SQ0-2|PHLDB2	nc|ENSG00000144824|Q86SQ0-2|PHLDB2	MULTI-SECPEP	A375_MHC_IP_R1	1	376.9804382324219	2	376.700503	751.386454	0.71432	0.00026908	-0.21939	-8.2643E-05	0.49493	0.00018644	376.70038272569366	39.008	0.55969	39.008	38.78	39.34	0					15	10	2	0	0	0	0.97144	1	13420	13420		5.2307	4.437	1	3551600			50210	5518	36521	36812	49036	49036					0.0008158225481338377
SLSGLISEW	9	Unmodified	_SLSGLISEW_					0	0	0			REV__nc|ENSG00000102452|Q8IZF0-2|NALCN	REV__nc|ENSG00000102452|Q8IZF0-2|NALCN	MULTI-SECPEP	A375_MHC_IP_R1	1	495.6750183105469	2	496.258382	990.502212	-0.3003	-0.00014903	2.118	0.0010511	1.8177	0.00090205	496.2592851019217	62.314	0.40858	62.314	62.046	62.454	0					9	7	2	0	0	0	0.16229	1	22466	22466		57.471	6.6163	1	1199600	+		50211	25103	36522	36813	49037	49037					0.00658061315004943
SLSGQSYGAY	10	Unmodified	_SLSGQSYGAY_					0	0	0		ENSG00000105392|ENST00000221996|CRX	ENSG00000105392|ENST00000221996|CRX	ENSG00000105392|ENST00000221996|CRX	MULTI-MSMS	A375_MHC_IP_R1	1	516.695556640625	2	516.735271	1031.45599	-0.76793	-0.00039682	-0.016158	-8.3492E-06	-0.78409	-0.00040517	516.7351694374033	28.936	0.55776	28.936	28.745	29.302	0					22	10	3	0	0	0	0.63639	1	8930	8930		18.146	4.6385	1	9606800			50212	2597	36523	36814	49038	49038					-0.05848003587107087
SLSGQSYGAY	10	Unmodified	_SLSGQSYGAY_					0	0	0		ENSG00000105392|ENST00000221996|CRX	ENSG00000105392|ENST00000221996|CRX	ENSG00000105392|ENST00000221996|CRX	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	516.735271	1031.45599	-1.2096	-0.00062503	0.1222	6.3147E-05	-1.0874	-0.00056189	516.7352376249453	28.4	0.45474	29.079	28.909	29.364	0.67857	0.071276	9.2725E-05	NaN	18.146	20	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11036000			50213	2597	36523	36814							-0.05848003587107087
SLSHELWKV	9	Unmodified	_SLSHELWKV_					0	0	0		nc|ENSG00000078687|Q9HCJ0-1|TNRC6C;nc|ENSG00000078687|Q9HCJ0-2|TNRC6C;nc|ENSG00000078687|Q9HCJ0-4|TNRC6C;ENSG00000078687|ENST00000696270|TNRC6C;ENST00000592566.1_1_17:76094428-76098694:+|nuORF	nc|ENSG00000078687|Q9HCJ0-1|TNRC6C	nc|ENSG00000078687|Q9HCJ0-1|TNRC6C	MULTI-SECPEP	A375_MHC_IP_R1	1	367.2694396972656	3	366.869591	1097.58694	0.2673	9.8065E-05	-0.014351	-5.2649E-06	0.25295	9.28E-05	366.8694835160678	55.474	0.56162	55.474	55.177	55.738	0					17	10	2	0	0	0	0.63327	1	19842	19842		8.9762	4.7867	1	1996500			50214	1679	36524	36815	49039	49039					0.04205431851596586
SLSHERKLY	9	Unmodified	_SLSHERKLY_					0	0	0			REV__ENSG00000114988|ENST00000264963|LMAN2L	REV__ENSG00000114988|ENST00000264963|LMAN2L	MULTI-SECPEP	A375_MHC_IP_R2	2	567.1740112304688	2	566.809105	1131.60366	-0.55393	-0.00031398	-1.5351	-0.00087012	-2.089	-0.0011841	566.8080314833701	62.251	0.71075	62.994	62.673	63.383	0.74263					20	13	2	0	0	0	0.65527	1	23585	23585		17.113	0	1	3480500	+		50215	17851	36525	36816	49040	49040					0.04311932737573443
SLSHLVPAL	9	Unmodified	_SLSHLVPAL_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;nc|ENSG00000149262|Q96HW7-3|INTS4;ENST00000433818.6_1_11:77629258-77692594:-|nuORF;ENST00000533180.1_1_11:77612465-77632469:-|nuORF	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-SECPEP	A375_MHC_IP_R1	1	468.6105041503906	2	468.779285	935.544017	-0.32013	-0.00015007	-0.21686	-0.00010166	-0.53699	-0.00025173	468.77919569078705	83.232	0.45879	83.232	83.075	83.533	0					15	8	2	0	0	0	0.20567	1	30491	30491		46.021	17.534	1	877970			50216	5794	36526	36817	49041	49041					0.07366661794185347
SLSHNTQQW	9	Unmodified	_SLSHNTQQW_					0	0	0		nc|ENSG00000204516|Q29980-2|MICB;ENSG00000204516|ENST00000252229|MICB	nc|ENSG00000204516|Q29980-2|MICB	nc|ENSG00000204516|Q29980-2|MICB	MSMS	A375_MHC_IP_R1	1	550.720947265625	2	550.759612	1099.50467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.451	1	80.451	79.951	80.951	0								0	0	0	0.15486	1	29379	29379		12.532	0	1				50217	9451	36527	36818	49042	49042					-0.04110090227322871
SLSHPPPDLP	10	Unmodified	_SLSHPPPDLP_					0	0	0		ENSG00000185070|ENST00000330753|FLRT2	ENSG00000185070|ENST00000330753|FLRT2	ENSG00000185070|ENST00000330753|FLRT2	MULTI-MSMS	A375_MHC_IP_R1	1	530.2132568359375	2	530.277106	1058.53966	-0.59332	-0.00031463	-0.26141	-0.00013862	-0.85473	-0.00045324	530.2768875569026	77.424	0.86325	77.424	76.776	77.639	0					22	16	2	0	0	0	0.55789	1	28144	28144		24.021	0	1	1728800			50218	8638	36528	36819	49043	49043					0.012731525806202626
SLSHRCIL	8	Unmodified	_SLSHRCIL_					0	0	0		nc|ENSG00000265972|Q9H3M7-2|TXNIP	nc|ENSG00000265972|Q9H3M7-2|TXNIP	nc|ENSG00000265972|Q9H3M7-2|TXNIP	MSMS	A375_MHC_IP_R1	1	464.65362548828125	2	464.755287	927.496021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.02	1	112.02	111.52	112.52	0								0	0	0	0.16876	1	41061	41061		10.183	0	1				50219	14932	36529	36820	49044	49044					0.029372646024967253
SLSIICKQ	8	Unmodified	_SLSIICKQ_					0	0	0		ENSG00000214279|ENST00000640237|SCART1;ENST00000482993.6_3_10:135273418-135278483:+|nuORF;ENST00000488261.6_3_10:135271820-135304727:+|nuORF	ENSG00000214279|ENST00000640237|SCART1;ENST00000488261.6_3_10:135271820-135304727:+|nuORF	ENSG00000214279|ENST00000640237|SCART1	MSMS	A375_MHC_IP_R1	1	446.2894592285156	2	446.252046	890.489538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.279	1	31.279	30.779	31.779	0								0	0	0	0.16876	1	10006	10006		9.3474	0	1				50220	9611;12613	36530	36821	49045	49045					0.03991326651112104
SLSILDLLF	9	Unmodified	_SLSILDLLF_					0	0	0		nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1	nc|ENSG00000017260|P98194-4|ATP2C1	nc|ENSG00000017260|P98194-4|ATP2C1	MULTI-MSMS	A375_MHC_IP_R1	1	510.6209716796875	2	510.802426	1019.5903	-0.62783	-0.00032069	1.3512	0.00069022	0.72342	0.00036953	510.8033994596151	66.369	0.76042	66.369	65.768	66.529	0					17	14	2	0	0	0	0.55818	1	24068	24068		16.942	1.0951	1	876720			50221	1040	36531	36822	49046	49046					0.08128681905611757
SLSILYPLFAE	11	Unmodified	_SLSILYPLFAE_					0	0	0		ENST00000351718.8_2_7:108039963-108040029:-|nuORF	ENST00000351718.8_2_7:108039963-108040029:-|nuORF	ENST00000351718.8_2_7:108039963-108040029:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	418.15435791015625	3	418.232307	1251.67509	0.040525	1.6949E-05	-1.9703	-0.00082405	-1.9298	-0.0008071	418.2315547256454	53.134	0.35484	53.134	52.997	53.352	0					9	6	2	0	0	0	0.73472	1	18896	18896		4.4062	0	1	726530			50222	10928	36532	36823	49047	49047					0.059320076515632536
SLSISLNWKR	10	Unmodified	_SLSISLNWKR_					0	0	0			REV__ENST00000588741.5_1_18:31206995-31224899:+|nuORF	REV__ENST00000588741.5_1_18:31206995-31224899:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	401.6033935546875	3	401.899662	1202.67716	-0.40435	-0.00016251	-0.90521	-0.0003638	-1.3096	-0.00052631	401.8996081084919	28.364	0.30197	28.364	28.088	28.39	0					7	5	2	0	0	0	0.94363	1	8724	8724		5.4027	2.3304	1	1179200	+		50223	26416	36533	36824	49048	49048					0.08392481180021605
SLSKITTTV	9	Unmodified	_SLSKITTTV_					0	0	0		ENST00000424545.2_1_20:62337059-62338084:-|nuORF;nc|ENSG00000101246|Q13795-4|ARFRP1;ENST00000609537.5_1_20:62333085-62338084:-|nuORF;nc|ENSG00000101246|Q13795-3|ARFRP1;nc|ENSG00000101246|Q13795-2|ARFRP1;ENSG00000101246|ENST00000622789|ARFRP1	ENST00000424545.2_1_20:62337059-62338084:-|nuORF	ENST00000424545.2_1_20:62337059-62338084:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	475.681396484375	2	475.281857	948.549162	-0.86209	-0.00040974	0.093065	4.4232E-05	-0.76903	-0.00036551	475.281783100092	41.319	0.35606	41.319	41.114	41.47	0					14	6	3	0	0	0	0.4465	1	14292	14292		19.362	3.5148	1	2161400			50224	2273	36534	36825	49049	49049					0.07282920866111908
SLSKITTTV	9	Unmodified	_SLSKITTTV_					0	0	0		ENST00000424545.2_1_20:62337059-62338084:-|nuORF;nc|ENSG00000101246|Q13795-4|ARFRP1;ENST00000609537.5_1_20:62333085-62338084:-|nuORF;nc|ENSG00000101246|Q13795-3|ARFRP1;nc|ENSG00000101246|Q13795-2|ARFRP1;ENSG00000101246|ENST00000622789|ARFRP1	ENST00000424545.2_1_20:62337059-62338084:-|nuORF	ENST00000424545.2_1_20:62337059-62338084:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	474.6794128417969	2	475.281857	948.549162	-0.6298	-0.00029933	-0.34216	-0.00016262	-0.97196	-0.00046196	475.28155708991505	40.517	0.30366	41.292	41.082	41.386	0.77451					9	5	2	0	0	0	0.56537	1	14990	14990		22.736	8.8302	1	2024700			50225	2273	36534	36825	49050	49050					0.07282920866111908
SLSKVLTKMLH	11	Unmodified	_SLSKVLTKMLH_					0	0	0			REV__ENSG00000136478|ENST00000584379|TEX2	REV__ENSG00000136478|ENST00000584379|TEX2	MSMS	A375_MHC_IP_R2	2	628.9688720703125	2	628.873391	1255.73223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.767	1	94.512	94.012	95.012	0.74474								0	0	0	0.16213	1	35642	35642		7.609	2.3121	1		+		50226	18939	36535	36826	49051	49051					0.11459151656299582
SLSLFLLDQND	11	Unmodified	_SLSLFLLDQND_					0	0	0		nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;ENSG00000204956|ENST00000517417|PCDHGA1	nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	MULTI-SECPEP	A375_MHC_IP_R1	1	632.0558471679688	2	632.824618	1263.63468	-0.68764	-0.00043515	-0.55632	-0.00035205	-1.244	-0.0007872	632.8240051365025	64.47	0.45837	64.47	64.242	64.7	0					13	8	2	0	0	0	0.84606	1	23270	23270		16.149	0	1	1787100			50227	9488	36536	36827	49052	49052					0.013410412611619904
SLSLGATF	8	Unmodified	_SLSLGATF_					0	0	0			REV__nc|ENSG00000100336|Q9BPW4|APOL4	REV__nc|ENSG00000100336|Q9BPW4|APOL4	MULTI-SECPEP	A375_MHC_IP_R1	1	398.6157531738281	2	398.215986	794.417419	-0.16567	-6.5974E-05	-0.032157	-1.2805E-05	-0.19783	-7.878E-05	398.21592314034444	34.747	0.30347	34.747	34.557	34.861	0					9	5	2	0	0	0	0.69059	1	11505	11505		30.225	0	1	5781000	+		50228	17076	36537	36828	49053	49053					0.011987355690507684
SLSLGHPSPV	10	Unmodified	_SLSLGHPSPV_					0	0	0			REV__SVA_D_dup914|chr11:75876850-75878935:-|1.3000520484701088|0.1350535341105196|3.27|462.0|1|1|sense	REV__SVA_D_dup914|chr11:75876850-75878935:-|1.3000520484701088|0.1350535341105196|3.27|462.0|1|1|sense	MSMS	A375_MHC_IP_R1	1	497.1980895996094	2	497.271824	992.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.058	1	56.058	55.558	56.558	0								0	0	0	0.14601	1	20071	20071		25.399	1.3787	1		+		50229	28066	36538	36829	49054	49054					0.03253169926188093
SLSLGKKG	8	Unmodified	_SLSLGKKG_					0	0	0			REV__ENST00000303115.7_1_5:35874625-35876091:+|nuORF	REV__ENST00000303115.7_1_5:35874625-35876091:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	395.6451721191406	2	395.245078	788.475603	0.15764	6.2305E-05	0.25649	0.00010138	0.41413	0.00016368	395.24516724696736	44.279	0.4097	44.279	44.061	44.471	0					10	7	2	0	0	0	0.95423	1	15444	15444		18.135	1.1927	1	1964400	+		50230	23442	36539	36830	49055	49055					0.07290417214335321
SLSLGKKG	8	Unmodified	_SLSLGKKG_					0	0	0			REV__ENST00000303115.7_1_5:35874625-35876091:+|nuORF	REV__ENST00000303115.7_1_5:35874625-35876091:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	395.64483642578125	2	395.245078	788.475603	-0.0099957	-3.9507E-06	0.038704	1.5297E-05	0.028708	1.1347E-05	395.2449724990582	43.243	0.35522	44.015	43.876	44.231	0.7724					10	6	2	0	0	0	0.972	1	16130	16130		12.532	5.2423	1	1679100	+		50231	23442	36539	36830	49056	49056					0.07290417214335321
SLSLLFQKV	9	Unmodified	_SLSLLFQKV_					0	0	0		nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6|PARP9	MULTI-SECPEP	A375_MHC_IP_R1	1	518.1680297851562	2	517.815867	1033.61718	-0.37084	-0.00019203	-0.43659	-0.00022608	-0.80743	-0.0004181	517.815666836504	35.418	0.30423	35.418	35.218	35.522	0					8	5	2	0	0	0	0.78348	1	11812	11812		4.3292	2.6766	1	847810			50232	14635	36540	36831	49057	49057					0.10171790516801593
SLSLSSAH	8	Unmodified	_SLSLSSAH_					0	0	0			REV__nc|ENSG00000140009|Q92731-4|ESR2	REV__nc|ENSG00000140009|Q92731-4|ESR2	MSMS	A375_MHC_IP_R2	2	401.1366882324219	2	401.208692	800.402832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.92	1	99.68	99.18	100.18	0.75977								0	0	0	0.16876	1	37524	37524		19.439	0	1		+		50233	27260	36541	36832	49058	49058					-0.005353365791052056
SLSMDSQVPV	10	Unmodified	_SLSMDSQVPV_					0	0	0		ENSG00000173276|ENST00000310826|ZBTB21;ZBTB21|p.R583Gfs*18|1|0.49|ENSG00000173276|chr21:41992350-41992350|C/-|frameshift_variant;nc|ENSG00000173276|Q9ULJ3-2|ZBTB21	ENSG00000173276|ENST00000310826|ZBTB21	ENSG00000173276|ENST00000310826|ZBTB21	MSMS	A375_MHC_IP_R2	2	531.7013549804688	2	531.760432	1061.50631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.67	1	102.44	101.94	102.94	0.76428								0	0	0	0.15283	1	38538	38538		11.64	0	1				50234	7785	36542	36833	49059	49059					-0.02198217253612711
SLSMELDNV	9	Unmodified	_SLSMELDNV_					0	0	0			REV__OR51L1|p.G74E|1|0.28|ENSG00000176798|chr11:4999203-4999203|G/A|missense_variant	REV__OR51L1|p.G74E|1|0.28|ENSG00000176798|chr11:4999203-4999203|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	504.18170166015625	2	504.239332	1006.46411	-0.56354	-0.00028416	1.6133	0.0008135	1.0498	0.00052934	504.2396850041401	86.49	1.2131	86.49	85.87	87.083	0					67	23	4	0	0	0	0.46038	2	31740	31740;31782		21.747	0	1	13665000	+		50235	27681	36543	36834	49060;49061	49060					-0.03886192661968835
SLSMVNHRL	9	Unmodified	_SLSMVNHRL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF;ENST00000507771.5_1_17:48154781-48156326:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-SECPEP	A375_MHC_IP_R1	1	352.616943359375	3	352.858809	1055.5546	-0.13104	-4.6238E-05	-0.32094	-0.00011325	-0.45198	-0.00015949	352.8586578840461	34.228	0.50651	34.228	33.898	34.405	0					20	9	3	0	0	0	0.33896	1	11254	11254		47.594	47.594	1	9533900			50236	903	36544	36835	49062	49062					0.029043211769703703
SLSMVNHRL	9	Unmodified	_SLSMVNHRL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF;ENST00000507771.5_1_17:48154781-48156326:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-SECPEP	A375_MHC_IP_R1	1	529.1844482421875	2	528.784576	1055.5546	-0.58429	-0.00030896	0.08023	4.2424E-05	-0.50406	-0.00026654	528.7846654673077	34.228	0.35348	34.228	34.052	34.405	0					14	6	3	0	0	0	0.38134	1	11292	11292		49.554	15.452	1	4548700			50237	903	36544	36835	49063	49063					0.029043211769703703
SLSMVNHRL	9	Unmodified	_SLSMVNHRL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF;ENST00000507771.5_1_17:48154781-48156326:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-SECPEP	A375_MHC_IP_R2	2	352.6167907714844	3	352.858809	1055.5546	-0.5172	-0.0001825	-0.33248	-0.00011732	-0.84968	-0.00029982	352.8587407399749	33.317	0.66124	34.069	33.737	34.399	0.75225					29	12	4	0	0	0	0.14606	1	11912	11912		55.503	30.103	1	17370000			50238	903	36544	36835	49064	49064					0.029043211769703703
SLSMVNHRL	9	Unmodified	_SLSMVNHRL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF;ENST00000507771.5_1_17:48154781-48156326:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-SECPEP	A375_MHC_IP_R2	2	529.1838989257812	2	528.784576	1055.5546	-0.82021	-0.00043372	-0.36053	-0.00019065	-1.1807	-0.00062436	528.7843803927881	33.317	0.40704	34.069	33.84	34.247	0.75225					12	7	2	0	0	0	0.076731	1	11924	11924		78.728	36.633	1	6580000			50239	903	36544	36835	49065	49065					0.029043211769703703
SLSNFIESV	9	Unmodified	_SLSNFIESV_					0	0	0		ENSG00000183808|ENST00000520560|RBM12B	ENSG00000183808|ENST00000520560|RBM12B	ENSG00000183808|ENST00000520560|RBM12B	MULTI-MSMS	A375_MHC_IP_R1	1	498.65557861328125	2	498.25584	994.497126	0.13146	6.5502E-05	-0.25815	-0.00012862	-0.12669	-6.3123E-05	498.2556804977451	113.87	0.91747	113.87	113.34	114.26	0					26	17	2	0	0	0	0.0096397	1	41677	41677		126.57	15.279	1	4127000			50240	8531	36545	36836	49066	49066					-0.0003424254761057455
SLSNYAIGY	9	Unmodified	_SLSNYAIGY_					0	0	0			REV__nc|ENSG00000137145|Q5VZ89|DENND4C	REV__nc|ENSG00000137145|Q5VZ89|DENND4C	MULTI-MSMS	A375_MHC_IP_R2	2	494.6427001953125	2	494.242732	986.470912	-0.77601	-0.00038354	0.20765	0.00010263	-0.56835	-0.0002809	494.2428344345332	49.514	2.0772	50.271	49.792	51.869	0.75737					113	40	5	0	0	0	0.12592	1	18960	18960		46.021	9.5148	1	426560000	+		50241	18989	36546	36837	49067	49067					-0.022865117191145146
SLSPARHSFP	10	Unmodified	_SLSPARHSFP_					0	0	0		ENST00000249883.9_1_3:134076331-134076550:-|nuORF	ENST00000249883.9_1_3:134076331-134076550:-|nuORF	ENST00000249883.9_1_3:134076331-134076550:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	367.5853576660156	3	366.861207	1097.56179	0.10277	3.7702E-05	0.84605	0.00031038	0.94882	0.00034809	366.8615228358774	32.35	0.40807	33.087	32.857	33.265	0.73692					16	7	3	0	0	0	0.91556	1	11460	11460		3.3196	0.24738	1	3021900			50242	10198	36547	36838	49068	49068					0.016913770490418756
SLSPARHSFP	10	Unmodified	_SLSPARHSFP_					0	0	0		ENST00000249883.9_1_3:134076331-134076550:-|nuORF	ENST00000249883.9_1_3:134076331-134076550:-|nuORF	ENST00000249883.9_1_3:134076331-134076550:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	366.861207	1097.56179	0.098166	3.6013E-05	1.3939	0.00051136	1.492	0.00054737	366.8617121667073	33.003	0.45517	33.003	32.684	33.14	0	-0.041865	0.0003276	NaN	3.3196	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2150600			50243	10198	36547	36838							0.016913770490418756
SLSPDLAPTV	10	Unmodified	_SLSPDLAPTV_					0	0	0		ENST00000336798.11_2_1:31345605-31346058:-|nuORF	ENST00000336798.11_2_1:31345605-31346058:-|nuORF	ENST00000336798.11_2_1:31345605-31346058:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	500.4739990234375	2	500.27149	998.528426	-0.60673	-0.00030353	1.2252	0.00061292	0.61845	0.00030939	500.27155656733134	80.472	0.96511	81.216	80.759	81.724	0.74473					34	18	4	0	0	0	0.6806	1	30693	30693		14.838	0.25658	1	3322200			50244	10821	36548	36839	49069	49069					0.02910330486474777
SLSPEKIKLKL	11	Unmodified	_SLSPEKIKLKL_					0	0	0		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MULTI-MSMS	A375_MHC_IP_R2	2	628.4473876953125	2	628.402838	1254.79112	-0.63099	-0.00039652	0.4958	0.00031156	-0.13519	-8.4955E-05	628.4031947519685	143.51	2.4724	143.53	142.47	144.95	0.024429					71	51	2	0	0	0	0.73886	1	55869	55869		1.3295	1.0225	1	807550			50245	7896	36549	36840	49070	49070					0.17391951222271018
SLSPGRPPL	9	Unmodified	_SLSPGRPPL_					0	0	0		ENST00000293288.12_1_19:49464748-49464931:+|nuORF	ENST00000293288.12_1_19:49464748-49464931:+|nuORF	ENST00000293288.12_1_19:49464748-49464931:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	462.66900634765625	2	462.269084	922.523616	-0.1127	-5.2098E-05	-0.14246	-6.5853E-05	-0.25516	-0.00011795	462.2690257902097	45.933	0.8111	45.933	45.434	46.245	0					22	15	2	0	0	0	0.56537	1	16078	16078		29.082	5.061	1	2850900			50246	10482	36550	36841	49071	49071					0.059254911343600725
SLSPGRPPL	9	Unmodified	_SLSPGRPPL_					0	0	0		ENST00000293288.12_1_19:49464748-49464931:+|nuORF	ENST00000293288.12_1_19:49464748-49464931:+|nuORF	ENST00000293288.12_1_19:49464748-49464931:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	462.6687316894531	2	462.269084	922.523616	-0.60758	-0.00028086	0.055099	2.5471E-05	-0.55248	-0.00025539	462.26904860768957	45.073	0.96675	45.843	45.239	46.205	0.7691					24	18	2	0	0	0	0.56537	1	16827	16827		29.082	9.8246	1	2529100			50247	10482	36550	36841	49072	49072					0.059254911343600725
SLSPLKSYSIY	11	Unmodified	_SLSPLKSYSIY_					0	0	0		PTPRT|p.P694S|1|0.05|ENSG00000196090|chr20:42315782-42315782|G/A|missense_variant	PTPRT|p.P694S|1|0.05|ENSG00000196090|chr20:42315782-42315782|G/A|missense_variant	PTPRT|p.P694S|1|0.05|ENSG00000196090|chr20:42315782-42315782|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	629.1929321289062	2	629.339904	1256.66525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.983	1	97.739	97.239	98.239	0.75586								0	0	0	0.15377	1	36814	36814		18.146	8.7632	1				50248	15254	36551	36842	49073	49073					0.04718819646200245
SLSPPPATL	9	Unmodified	_SLSPPPATL_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1;ENST00000476994.1_1_17:17723326-17726886:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	MSMS	A375_MHC_IP_R2	2	441.681884765625	2	441.750193	881.485833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.637	1	70.372	69.872	70.872	0.73421								0	0	0	0.030162	1	26390	26390		67.344	16.489	1				50249	1535	36552	36843	49074	49074					0.04034980148901468
SLSPPRPCPL	10	Unmodified	_SLSPPRPCPL_					0	0	0			REV__ENST00000584021.1_1_11:119290120-119290366:-|nuORF	REV__ENST00000584021.1_1_11:119290120-119290366:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	533.0267333984375	2	533.789327	1065.5641	-0.61267	-0.00032704	1.5045	0.0008031	0.89186	0.00047606	533.7898130284423	98.199	0.50714	98.199	97.896	98.403	0					14	9	2	0	0	0	0.87163	1	35970	35970		9.3831	0	1	871000	+		50250	26368	36553	36844	49075	49075					0.03394089462494776
SLSPPWDQD	9	Unmodified	_SLSPPWDQD_					0	0	0		nc|ENSG00000150527|Q96PC5-11|MIA2;nc|ENSG00000150527|Q96PC5-13|MIA2;nc|ENSG00000150527|Q96PC5-5|MIA2;nc|ENSG00000150527|Q96PC5-8|MIA2;nc|ENSG00000150527|Q96PC5-10|MIA2;nc|ENSG00000150527|Q96PC5-9|MIA2;nc|ENSG00000150527|Q96PC5-14|MIA2;nc|ENSG00000150527|Q96PC5-7|MIA2;nc|ENSG00000150527|Q96PC5-12|MIA2;ENSG00000150527|ENST00000640607|MIA2;nc|ENSG00000150527|Q96PC5-6|MIA2	nc|ENSG00000150527|Q96PC5-11|MIA2	nc|ENSG00000150527|Q96PC5-11|MIA2	MULTI-MSMS	A375_MHC_IP_R1	1	523.213134765625	2	522.735271	1043.45599	-0.37917	-0.0001982	-0.31472	-0.00016452	-0.69389	-0.00036272	522.7350705626897	56.29	0.35587	56.29	56.041	56.397	0					11	6	2	0	0	0	0.63811	1	20144	20144		12.532	0	1	809260			50251	5848	36554	36845	49076	49076					-0.064000035871004
SLSPSYPHPA	10	Unmodified	_SLSPSYPHPA_					0	0	0			REV__PRR30|p.P92S|1|0.19|ENSG00000186143|chr2:27138056-27138056|G/A|missense_variant	REV__PRR30|p.P92S|1|0.19|ENSG00000186143|chr2:27138056-27138056|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	528.6611938476562	2	528.261456	1054.50836	-0.40445	-0.00021365	-0.085661	-4.5252E-05	-0.49011	-0.0002589	528.2614501658829	54.398	0.60724	54.398	54.113	54.72	0					27	11	3	0	0	0	0.78945	1	19463	19463		19.257	0	1	7260700	+		50252	27845	36555	36846	49077	49077					-0.016714204534764576
SLSPSYPHPA	10	Unmodified	_SLSPSYPHPA_					0	0	0			REV__PRR30|p.P92S|1|0.19|ENSG00000186143|chr2:27138056-27138056|G/A|missense_variant	REV__PRR30|p.P92S|1|0.19|ENSG00000186143|chr2:27138056-27138056|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	528.660888671875	2	528.261456	1054.50836	-0.98614	-0.00052094	-0.29692	-0.00015685	-1.2831	-0.00067779	528.2613163231907	53.729	0.66696	54.48	54.097	54.764	0.75105					27	12	3	0	0	0	0.55789	1	20291	20291		24.021	0	1	7458500	+		50253	27845	36555	36846	49078	49078					-0.016714204534764576
SLSPTARTY	9	Unmodified	_SLSPTARTY_					0	0	0		nc|ENSG00000148737|Q9NQB0-14|TCF7L2;nc|ENSG00000148737|Q9NQB0-15|TCF7L2;nc|ENSG00000148737|Q9NQB0-10|TCF7L2;nc|ENSG00000148737|Q9NQB0-12|TCF7L2;nc|ENSG00000148737|Q9NQB0-11|TCF7L2;nc|ENSG00000148737|Q9NQB0-13|TCF7L2;nc|ENSG00000148737|Q9NQB0-16|TCF7L2;nc|ENSG00000148737|Q9NQB0-8|TCF7L2	nc|ENSG00000148737|Q9NQB0-14|TCF7L2	nc|ENSG00000148737|Q9NQB0-14|TCF7L2	MULTI-SECPEP	A375_MHC_IP_R2	2	498.6612243652344	2	498.261456	994.50836	-0.90953	-0.00045318	-0.28424	-0.00014162	-1.1938	-0.00059481	498.26134883554823	28.459	0.55836	29.138	28.655	29.214	0.67857					16	10	2	0	0	0	0.5212	1	9821	9821		26.268	16.194	1	4392100			50254	14671	36556	36847	49079	49079					0.010885795465242154
SLSPWQPL	8	Unmodified	_SLSPWQPL_					0	0	0		TK2|p.F226Sfs*9|1|0.24|ENSG00000166548|chr16:66513753-66513753|A/-|frameshift_variant	TK2|p.F226Sfs*9|1|0.24|ENSG00000166548|chr16:66513753-66513753|A/-|frameshift_variant	TK2|p.F226Sfs*9|1|0.24|ENSG00000166548|chr16:66513753-66513753|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	465.1525573730469	2	464.25036	926.486168	-0.53667	-0.00024915	-0.82307	-0.00038211	-1.3597	-0.00063126	464.2489777239178	67.851	0.8653	68.586	68.102	68.968	0.73511					35	16	3	0	0	0	0.75322	2	25801	25723;25801		19.439	2.4967	1	3088900			50255	29347	36557	36848	49080;49081	49081					0.01998399868762135
SLSQELVFN	9	Unmodified	_SLSQELVFN_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-MSMS	A375_MHC_IP_R1	1	1036.3851318359375	1	1036.53095	1035.52368	0.41363	0.00042874	-0.22374	-0.00023191	0.18989	0.00019683	1036.5306800166845	108	0.40581	108	107.75	108.15	0					12	7	2	0	0	0	0.030038	1	39609	39609		74.929	18.752	1	2878800	+		50256	22428	36558	36849	49082	49082					0.007334463437246086
SLSQELVFN	9	Unmodified	_SLSQELVFN_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1694946289062	2	518.769114	1035.52368	-0.27095	-0.00014056	0.22346	0.00011592	-0.047495	-2.4639E-05	518.7692207732182	107.99	0.76218	107.99	107.7	108.46	0					25	14	2	0	0	0	0.24324	1	39586	39586		45.7	10.768	1	9201300	+		50257	22428	36558	36849	49083	49083					0.007334463437246086
SLSQELVFN	9	Unmodified	_SLSQELVFN_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-SECPEP	A375_MHC_IP_R2	2	1036.931884765625	1	1036.53095	1035.52368	-0.02794	-2.8961E-05	0.00013367	1.3855E-07	-0.027807	-2.8822E-05	1036.5310068448953	107.27	0.45683	108.02	107.74	108.2	0.75436					12	8	2	0	0	0	0.13064	1	40569	40569		65.235	12.967	1	2602600	+		50258	22428	36558	36849	49084	49084					0.007334463437246086
SLSQELVFN	9	Unmodified	_SLSQELVFN_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	1036.53095	1035.52368	0.41363	0.00042874	-0.22374	-0.00023191	0.18989	0.00019683	1036.5306800166845	108	0.40581	108	107.75	108.15	0	-0.011131	-7.2868E-05	NaN	74.929	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2878800	+		50259	22428	36558	36849							0.007334463437246086
SLSQELVGV	9	Unmodified	_SLSQELVGV_					0	0	0		ENSG00000171467|ENST00000361428|ZNF318;nc|ENSG00000171467|Q5VUA4-2|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	MULTI-MSMS	A375_MHC_IP_R1	1	466.6579895019531	2	466.258382	930.502212	-0.15722	-7.3304E-05	-0.33909	-0.0001581	-0.49631	-0.00023141	466.2581664984535	88.58	0.60985	88.58	88.154	88.764	0					22	11	3	0	0	0	0.064406	1	32497	32497		58.679	0	1	2107100			50260	7603	36559	36850	49085	49085					0.03418061315005616
SLSQELVGV	9	Unmodified	_SLSQELVGV_					0	0	0		ENSG00000171467|ENST00000361428|ZNF318;nc|ENSG00000171467|Q5VUA4-2|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	466.258382	930.502212	-0.56428	-0.0002631	0.3299	0.00015382	-0.23438	-0.00010928	466.25858434309544	87.627	0.91071	88.358	88.116	89.026	0.7318	-0.11081	0.00040512	NaN	58.679	21	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2189700			50261	7603	36559	36850							0.03418061315005616
SLSQGTPACDV	11	Unmodified	_SLSQGTPACDV_					0	0	0			REV__tr|U7T897|U7T897_FUSNUArsenite-transportingATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00167PE=3SV=1	REV__tr|U7T897|U7T897_FUSNUArsenite-transportingATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00167PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	539.2095947265625	2	539.247689	1076.48082	-0.8121	-0.00043792	-2.2583	-0.0012178	-3.0704	-0.0016557	539.2464377620007	36.92	0.50411	36.92	36.644	37.148	0					14	9	2	0	0	0	0.72649	1	12320	12320		12.241	0.60036	1	3176700	+		50262	28882	36560	36851	49086	49086					-0.054356917760287615
SLSQITFASL	10	Unmodified	_SLSQITFASL_					0	0	0			REV__ENST00000534947.5_1_12:6833660-6833753:+|nuORF	REV__ENST00000534947.5_1_12:6833660-6833753:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	533.6590576171875	2	533.792589	1065.57063	-0.48219	-0.00025739	-2.8087	-0.0014993	-3.2909	-0.0017567	533.7918247624468	71.472	0.25233	71.472	71.313	71.565	0					6	4	2	0	0	0	0.92227	1	25923	25923		5.2969	0	1	1320100	+		50263	25895	36561	36852	49087	49087					0.04046305894848956
SLSQRMNLSQ	10	Unmodified	_SLSQRMNLSQ_					0	0	0			REV__ENST00000552365.1_1_12:53874968-53878035:-|nuORF	REV__ENST00000552365.1_1_12:53874968-53878035:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	583.3533325195312	2	582.295504	1162.57646	-0.73568	-0.00042838	0.20343	0.00011846	-0.53224	-0.00030992	582.295710680292	58.788	0.76322	59.535	59.082	59.845	0.74714					36	14	4	0	0	0	0.70496	1	22130	22130		10.074	10.074	1	7020000	+		50264	19168	36562	36853	49088	49088					0.0016708113487311493
SLSQSCDEL	9	Unmodified	_SLSQSCDEL_					0	0	0			REV__nc|ENSG00000100578|Q9BVV6-2|KIAA0586	REV__nc|ENSG00000100578|Q9BVV6-2|KIAA0586	MULTI-MSMS	A375_MHC_IP_R1	1	491.614501953125	2	491.213314	980.412076	-0.33055	-0.00016237	1.7367	0.00085307	1.4061	0.0006907	491.21484579416045	99.576	0.75829	99.576	99.268	100.03	0					44	14	5	0	0	0	0.29981	2	36535	36535;36553		30.637	1.555	1	12418000	+		50265	17103	36563	36854	49089;49090	49089					-0.07891356075731437
SLSQSCDEL	9	Unmodified	_SLSQSCDEL_					0	0	0			REV__nc|ENSG00000100578|Q9BVV6-2|KIAA0586	REV__nc|ENSG00000100578|Q9BVV6-2|KIAA0586	MULTI-MSMS	A375_MHC_IP_R2	2	491.6149597167969	2	491.213314	980.412076	-0.43567	-0.00021401	2.2239	0.0010924	1.7882	0.00087841	491.21500970968157	98.72	0.81216	99.479	99.201	100.01	0.75977					37	15	3	0	0	0	0.064406	2	37547	37421;37547		58.679	7.8238	1	15280000	+		50266	17103	36563	36854	49091;49092	49092					-0.07891356075731437
SLSQSCDEL	9	Unmodified	_SLSQSCDEL_					0	0	0			REV__nc|ENSG00000100578|Q9BVV6-2|KIAA0586	REV__nc|ENSG00000100578|Q9BVV6-2|KIAA0586	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	491.213314	980.412076	-0.43567	-0.00021401	2.2239	0.0010924	1.7882	0.00087841	491.21500970968157	98.72	0.81216	99.479	99.201	100.01	0.75977	-0.048249	0.00024295	NaN	58.679	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15280000	+		50267	17103	36563	36854							-0.07891356075731437
SLSQTLLRF	9	Unmodified	_SLSQTLLRF_					0	0	0		ENST00000569097.1_1_6:160514621-160514993:+|nuORF	ENST00000569097.1_1_6:160514621-160514993:+|nuORF	ENST00000569097.1_1_6:160514621-160514993:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1852416992188	2	532.808574	1063.60259	-0.35719	-0.00019032	-0.71034	-0.00037848	-1.0675	-0.00056879	532.8083733750577	44.404	0.4618	44.404	44.113	44.575	0					11	8	2	0	0	0	0.71541	1	15458	15458		7.2892	0	1	1199300			50268	13587	36564	36855	49093	49093					0.07333718368658992
SLSRPKWSKG	10	Unmodified	_SLSRPKWSKG_					0	0	0			REV__ENST00000225941.5_1_17:47300115-47300355:+|nuORF	REV__ENST00000225941.5_1_17:47300115-47300355:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	382.9527893066406	3	382.552374	1144.63529	0.4643	0.00017762	1.4123	0.00054028	1.8766	0.0007179	382.55261666792427	49.899	0.56233	49.899	49.642	50.204	0					19	10	2	0	0	0	0.70174	1	17674	17674		11.518	0	1	3464500	+		50269	23061	36565	36856	49094	49094					0.06875925491499402
SLSRQKYQY	9	Unmodified	_SLSRQKYQY_					0	0	0			REV__ENSG00000259956|ENST00000563281|RBM15B	REV__ENSG00000259956|ENST00000563281|RBM15B	MULTI-SECPEP	A375_MHC_IP_R2	2	586.7029418945312	2	586.806562	1171.59857	-0.82131	-0.00048195	-4.2731	-0.0025075	-5.0944	-0.0029894	586.8040240078258	57.876	0.30221	58.625	58.427	58.729	0.74894					8	5	2	0	0	0	0.73363	1	21895	21895		10.824	0	1	1502300	+		50270	22904	36566	36857	49095	49095					0.019636288749325104
SLSRTLEI	8	Unmodified	_SLSRTLEI_					0	0	0			REV__nc|ENSG00000170390|Q8N568-2|DCLK2	REV__nc|ENSG00000170390|Q8N568-2|DCLK2	MULTI-SECPEP	A375_MHC_IP_R2	2	460.1664733886719	2	459.766374	917.518196	-0.31783	-0.00014613	0.14284	6.5672E-05	-0.175	-8.0457E-05	459.76644796513233	67.953	0.45824	68.688	68.459	68.918	0.73511					12	8	2	0	0	0	0.972	1	25782	25782		10.074	0	1	1718800	+		50271	20988	36567	36858	49096	49096					0.056137675519039476
SLSRVCAQRV	10	Unmodified	_SLSRVCAQRV_					0	0	0			REV__ENSG00000154803|ENST00000285071|FLCN	REV__ENSG00000154803|ENST00000285071|FLCN	MULTI-MSMS	A375_MHC_IP_R2	2	373.939208984375	3	373.54148	1117.60261	0.55932	0.00020893	2.2072	0.00082448	2.7665	0.0010334	373.8754237504246	43.603	1.0101	44.374	43.825	44.835	0.77127					29	19	2	0	0	0	0.7086	1	16312	16312		8.4443	0	1	2011000	+		50272	19899	36568	36859	49097	49097					0.04851395097011846
SLSRYNFII	9	Unmodified	_SLSRYNFII_					0	0	0			REV__nc|ENSG00000103091|Q6PJI9-4|WDR59	REV__nc|ENSG00000103091|Q6PJI9-4|WDR59	MULTI-SECPEP	A375_MHC_IP_R2	2	372.275634765625	3	371.541475	1111.60259	0.48592	0.00018054	-0.78123	-0.00029026	-0.29531	-0.00010972	371.5411994213522	63.434	0.7111	64.175	63.835	64.547	0.74022					29	13	3	0	0	0	0.67483	1	24018	24018		10.151	0.6066	1	5302600	+		50273	27155	36569	36860	49098	49098					0.051257183686630015
SLSSDWTGCY	10	Unmodified	_SLSSDWTGCY_					0	0	0			REV__nc|ENSG00000211644|P01701|IGLV1-51	REV__nc|ENSG00000211644|P01701|IGLV1-51	MULTI-SECPEP	A375_MHC_IP_R1	1	559.510009765625	2	559.726589	1117.43863	-0.42544	-0.00023813	-3.2536	-0.0018211	-3.679	-0.0020593	559.7245910269671	96.675	0.45586	96.675	96.529	96.985	0					12	8	2	0	0	0	0.90853	1	35551	35551		6.7232	0	1	676550	+		50274	27465	36570	36861	49099	49099					-0.11539667184410973
SLSSEVDTLK	10	Unmodified	_SLSSEVDTLK_					0	0	0		nc|ENSG00000090615|Q08378-4|GOLGA3;nc|ENSG00000090615|Q08378-2|GOLGA3;ENSG00000090615|ENST00000450791|GOLGA3	nc|ENSG00000090615|Q08378-4|GOLGA3	nc|ENSG00000090615|Q08378-4|GOLGA3	MULTI-SECPEP	A375_MHC_IP_R2	2	359.5729064941406	3	360.1924	1077.55537	-0.61833	-0.00022272	1.98	0.00071319	1.3617	0.00049048	360.1929871706771	26.119	0.3556	26.779	26.602	26.957	0.65992					11	6	2	0	0	0	0.72086	1	8770	8770		2.8433	2.2801	1	1439300			50275	1958	36571	36862	49100	49100					0.019693943070024034
SLSSFVGLH	9	Unmodified	_SLSSFVGLH_					0	0	0			REV__nc|ENSG00000103150|O95822-2|MLYCD	REV__nc|ENSG00000103150|O95822-2|MLYCD	MULTI-MSMS	A375_MHC_IP_R1	1	474.1528625488281	2	473.753267	945.491981	-0.64746	-0.00030674	0.62268	0.000295	-0.024783	-1.1741E-05	473.75314123518257	86.598	0.91061	86.598	86.224	87.134	0					39	17	3	0	0	0	0.1478	1	31780	31780		42.095	0	1	9412100	+		50276	17253	36572	36863	49101	49101					0.01705498380431436
SLSSFVGLH	9	Unmodified	_SLSSFVGLH_					0	0	0			REV__nc|ENSG00000103150|O95822-2|MLYCD	REV__nc|ENSG00000103150|O95822-2|MLYCD	MULTI-MSMS	A375_MHC_IP_R2	2	474.15277099609375	2	473.753267	945.491981	-0.38594	-0.00018284	0.14249	6.7506E-05	-0.24344	-0.00011533	473.75312151497627	85.65	1.3746	86.386	85.677	87.052	0.73601					42	26	3	0	0	0	0.060021	1	32538	32538		60.39	0	1	8131800	+		50277	17253	36572	36863	49102	49102					0.01705498380431436
SLSSFVGLH	9	Unmodified	_SLSSFVGLH_					0	0	0			REV__nc|ENSG00000103150|O95822-2|MLYCD	REV__nc|ENSG00000103150|O95822-2|MLYCD	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	473.753267	945.491981	-0.64746	-0.00030674	0.62268	0.000295	-0.024783	-1.1741E-05	473.75314123518257	86.598	0.91061	86.598	86.224	87.134	0	0.10623	0.00030986	NaN	60.39	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9412100	+		50278	17253	36572	36863							0.01705498380431436
SLSSITSLKKL	11	Unmodified	_SLSSITSLKKL_					0	0	0		ENSG00000085999|ENST00000371975|RAD54L	ENSG00000085999|ENST00000371975|RAD54L	ENSG00000085999|ENST00000371975|RAD54L	MSMS	A375_MHC_IP_R2	2	588.7627563476562	2	588.863546	1175.71254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.24	1	145.26	144.76	145.76	0.021408								0	0	0	0.16334	1	56711	56711		1.3295	0.72803	1				50279	1825	36573	36864	49103	49103					0.13171098917200652
SLSSSSFTW	9	Unmodified	_SLSSSSFTW_					0	0	0			REV__ENSG00000184144|ENST00000331830|CNTN2	REV__ENSG00000184144|ENST00000331830|CNTN2	MULTI-SECPEP	A375_MHC_IP_R2	2	500.474853515625	2	501.232364	1000.45018	-0.44179	-0.00022144	-0.5479	-0.00027462	-0.98968	-0.00049606	501.23204895932474	85.494	0.55985	86.23	85.831	86.391	0.73601					16	10	3	0	0	0	0.71541	1	32384	32384		1.6526	0	1	1258200	+		50280	21798	36574	36865	49104	49104					-0.05003102098748968
SLSTDAHILL	10	Unmodified	_SLSTDAHILL_					0	0	0		nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2;ENSG00000081853|ENST00000394576|PCDHGA2	nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2	nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2	MULTI-SECPEP	A375_MHC_IP_R2	2	535.6980590820312	2	535.298039	1068.58152	-1.2058	-0.00064547	-0.24424	-0.00013074	-1.4501	-0.00077621	535.2978498996213	59.593	1.0095	60.341	59.896	60.906	0.74714					31	19	3	0	0	0	0.65982	1	22534	22534		20.454	0	1	3714400			50281	1746	36575	36866	49105	49105					0.04997708269161194
SLSTIRNNELS	11	Unmodified	_SLSTIRNNELS_					0	0	0			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MSMS	A375_MHC_IP_R1	1	617.3889770507812	2	617.325316	1232.63608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.234	1	73.234	72.734	73.734	0								0	0	0	0.16213	1	26658	26658		7.609	1.4032	1		+		50282	18629	36576	36867	49106	49106					0.02906675349913712
SLSVCLEDF	9	Unmodified	_SLSVCLEDF_					0	0	0		ENSG00000205856|ENST00000382097|C22orf42	ENSG00000205856|ENST00000382097|C22orf42	ENSG00000205856|ENST00000382097|C22orf42	MSMS	A375_MHC_IP_R1	1	506.8879699707031	2	506.736425	1011.4583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.755	1	87.755	87.255	88.255	0								0	0	0	0.15486	1	32205	32205		11.64	1.4569	1				50283	9529	36577	36868	49107	49107					-0.04697291173636131
SLSVDEWAP	9	Unmodified	_SLSVDEWAP_					0	0	0			REV__ENST00000322088.10_1_19:52729261-52729453:+|nuORF	REV__ENST00000322088.10_1_19:52729261-52729453:+|nuORF	MSMS	A375_MHC_IP_R1	1	502.2081298828125	2	502.24019	1002.46583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.352	1	51.352	50.852	51.852	0								0	0	0	0.15486	1	18227	18227		7.9102	0	1		+		50284	23575	36578	36869	49108	49108					-0.035308155817233455
SLSWGPSCD	9	Unmodified	_SLSWGPSCD_					0	0	0			REV__SLC17A4|p.P284S|1|0.26|ENSG00000146039|chr6:25773537-25773537|C/T|missense_variant	REV__SLC17A4|p.P284S|1|0.26|ENSG00000146039|chr6:25773537-25773537|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	476.11859130859375	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.44	1	19.44	18.94	19.94	0								0	0	0	0.15486	1	4823	4823		7.2892	0.56607	1		+		50285	27975	36579	36870	49109	49109					-0.09679304039025283
SLSWHINKL	9	Unmodified	_SLSWHINKL_					0	0	0		nc|ENSG00000158966|Q5VU97-2|CACHD1;ENSG00000158966|ENST00000651257|CACHD1	nc|ENSG00000158966|Q5VU97-2|CACHD1	nc|ENSG00000158966|Q5VU97-2|CACHD1	MULTI-SECPEP	A375_MHC_IP_R2	2	366.9266662597656	3	366.541586	1096.60293	-0.43508	-0.00015948	0.53816	0.00019726	0.10308	3.7782E-05	366.5416934054014	37.274	0.40466	38.045	37.767	38.171	0.7709					12	7	2	0	0	0	0.50702	1	13637	13637		13.615	0	1	3219100			50286	6341	36580	36871	49110	49110					0.058491380885243416
SLSWLNASW	9	Unmodified	_SLSWLNASW_					0	0	0		nc|ENSG00000239732|Q9NR96-2|TLR9;nc|ENSG00000239732|Q9NR96-5|TLR9;ENSG00000239732|ENST00000360658|TLR9;nc|ENSG00000239732|Q9NR96-3|TLR9;nc|ENSG00000239732|Q9NR96-4|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	MULTI-SECPEP	A375_MHC_IP_R1	1	531.6901245117188	2	532.263999	1062.51345	-0.70935	-0.00037756	-1.3317	-0.00070883	-2.0411	-0.0010864	532.2636816085841	32.128	0.51258	32.128	31.769	32.282	0					16	9	3	0	0	0	0.65246	1	10205	10205		6.7232	0.51738	1	2271100			50287	9766	36581	36872	49111	49111					-0.015311165908542534
SLSYHKRKRWF	11	Unmodified	_SLSYHKRKRWF_					0	0	0			REV__ENST00000583028.1_1_17:62175367-62207458:-|nuORF	REV__ENST00000583028.1_1_17:62175367-62207458:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.68603515625	3	503.280877	1506.8208	-0.40467	-0.00020366	-0.46819	-0.00023563	-0.87287	-0.0004393	503.28074468915105	76.011	0.70481	76.011	75.514	76.219	0					20	13	2	0	0	0	0.99883	1	27709	27709		4.7159	3.2608	1	2666200	+		50288	26360	36582	36873	49112	49112					0.08766328010960933
SLSYLYKYLW	10	Unmodified	_SLSYLYKYLW_					0	0	0		ENSG00000120800|ENST00000261637|UTP20;ENST00000551825.1_1_12:101673946-101684681:+|nuORF	ENSG00000120800|ENST00000261637|UTP20;ENST00000551825.1_1_12:101673946-101684681:+|nuORF	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	A375_MHC_IP_R2	2	445.59722900390625	3	445.904301	1334.69108	-0.707	-0.00031525	1.1369	0.00050695	0.42991	0.0001917	446.23906793558945	21.258	0.40393	21.877	21.575	21.979	0.61932					11	7	2	0	0	0	0.94598	1	6643	6643		0.56317	0	1	2144800			50289	3688;13384	36583	36874	49113	49113					0.03711713888469603
SLSYSRYWTK	10	Unmodified	_SLSYSRYWTK_					0	0	0		ENST00000398238.8_1_17:44833191-44833326:+|nuORF	ENST00000398238.8_1_17:44833191-44833326:+|nuORF	ENST00000398238.8_1_17:44833191-44833326:+|nuORF	MSMS	A375_MHC_IP_R1	1	645.9636840820312	2	645.827495	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.44	1	100.44	99.941	100.94	0								0	0	0	0.15451	1	36918	36918		6.2058	0.9089	1				50290	11517	36584	36875	49114	49114					0.0072018456346540916
SLSYSSQITEV	11	Unmodified	_SLSYSSQITEV_					0	0	0			REV__ENST00000397843.6_2_11:120291521-120295070:+|nuORF	REV__ENST00000397843.6_2_11:120291521-120295070:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	405.9373474121094	3	405.203076	1212.5874	-0.16994	-6.8862E-05	0.2544	0.00010308	0.084453	3.4221E-05	405.20318240676903	21.29	0.55857	21.29	20.997	21.555	0					32	10	4	0	0	0	0.26358	1	5542	5542		33.821	9.8572	1	21259000	+		50291	24364	36585	36876	49115	49115					-0.010392380098892318
SLSYSSQITEV	11	Unmodified	_SLSYSSQITEV_					0	0	0			REV__ENST00000397843.6_2_11:120291521-120295070:+|nuORF	REV__ENST00000397843.6_2_11:120291521-120295070:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	405.203076	1212.5874	-0.16994	-6.8862E-05	0.2544	0.00010308	0.084453	3.4221E-05	405.20318240676903	21.29	0.55857	21.29	20.997	21.555	0	0	0	NaN	33.821	32	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21259000	+		50292	24364	36585	36876							-0.010392380098892318
SLTAIMTTM	9	Unmodified	_SLTAIMTTM_					0	0	0			REV__nc|ENSG00000164627|Q6ZMV9-3|KIF6	REV__nc|ENSG00000164627|Q6ZMV9-3|KIF6	MSMS	A375_MHC_IP_R1	1	484.67620849609375	2	484.743196	967.471839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.968	1	35.968	35.468	36.468	0								0	0	0	0.14359	1	12002	12002		28.487	10.352	1		+		50293	20505	36586	36877	49116	49116					-0.013197566660664961
SLTASLTYLY	10	Unmodified	_SLTASLTYLY_					0	0	0		ENST00000477049.1_1_9:135139628-135141576:-|nuORF	ENST00000477049.1_1_9:135139628-135141576:-|nuORF	ENST00000477049.1_1_9:135139628-135141576:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	377.5964050292969	3	377.869257	1130.58594	-0.11917	-4.503E-05	-0.92279	-0.00034869	-1.042	-0.00039372	377.86851402427874	19.126	0.25011	19.729	19.583	19.833	0.60308					6	4	2	0	0	0	0.93799	1	5790	5790		1.7423	0	1	1119600			50294	12438	36587	36878	49117	49117					0.025871726920513538
SLTCQNILFV	10	Unmodified	_SLTCQNILFV_					0	0	0		ENST00000374232.7_1_9:115567182-115580054:+|nuORF	ENST00000374232.7_1_9:115567182-115580054:+|nuORF	ENST00000374232.7_1_9:115567182-115580054:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	569.7028198242188	2	569.302267	1136.58998	-0.2005	-0.00011414	-0.17668	-0.00010058	-0.37718	-0.00021473	569.3022057484559	86.801	0.61085	87.534	87.151	87.762	0.733					23	11	3	0	0	0	0.6774	1	32978	32978		27.629	1.3607	1	3630900			50295	11248	36588	36879	49118	49118					0.0271493891409591
SLTCQNILFV	10	Unmodified	_SLTCQNILFV_					0	0	0		ENST00000374232.7_1_9:115567182-115580054:+|nuORF	ENST00000374232.7_1_9:115567182-115580054:+|nuORF	ENST00000374232.7_1_9:115567182-115580054:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	569.302267	1136.58998	-0.34713	-0.00019762	0.02516	1.4324E-05	-0.32197	-0.0001833	569.3023467236053	87.602	0.50777	87.602	87.39	87.898	0	0.034229	7.7367E-05	NaN	27.629	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2626300			50296	11248	36588	36879							0.0271493891409591
SLTDDLMNK	9	Unmodified	_SLTDDLMNK_					0	0	0		ENSG00000215251|ENST00000380266|FASTKD5	ENSG00000215251|ENST00000380266|FASTKD5	ENSG00000215251|ENST00000380266|FASTKD5	MULTI-SECPEP	A375_MHC_IP_R1	1	519.15234375	2	518.752607	1035.49066	-0.43296	-0.0002246	-0.38774	-0.00020114	-0.8207	-0.00042574	518.7524426363648	43.539	0.76192	43.539	43.197	43.959	0					28	14	3	0	0	0	0.53748	1	15081	15081		30.637	6.616	1	5507300			50297	9641	36589	36880	49119	49119					-0.025665037706630756
SLTDINELV	9	Unmodified	_SLTDINELV_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2;ENST00000469665.1_1_3:49160507-49161165:-|nuORF	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MULTI-SECPEP	A375_MHC_IP_R1	1	1002.8606567382812	1	1003.53062	1002.52334	0.39329	0.00039468	-1.7611	-0.0017674	-1.3678	-0.0013727	1004.5323933285244	109.81	0.40852	109.81	109.63	110.04	0					11	7	2	0	0	0	0.38578	1	40273	40273		41.84	3.8656	1	2694000			50298	7673	36590	36881	49120	49120					0.022180266238592594
SLTDNKIEI	9	Unmodified	_SLTDNKIEI_					0	0	0			REV__ENST00000479896.1_1_10:129869671-129881167:+|nuORF	REV__ENST00000479896.1_1_10:129869671-129881167:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	516.2053833007812	2	516.782222	1031.54989	-0.88595	-0.00045784	0.32434	0.00016761	-0.5616	-0.00029023	516.7821940567748	50.632	0.60735	51.386	51.057	51.665	0.75406					18	11	2	0	0	0	0.070818	1	19047	19047		56.177	0	1	3967900	+		50299	25240	36591	36882	49121	49121					0.03537715515176387
SLTDNKIEI	9	Unmodified	_SLTDNKIEI_					0	0	0			REV__ENST00000479896.1_1_10:129869671-129881167:+|nuORF	REV__ENST00000479896.1_1_10:129869671-129881167:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1814575195312	2	516.782222	1031.54989	-0.88595	-0.00045784	0.32434	0.00016761	-0.5616	-0.00029023	516.7821940567748	50.632	0.60735	51.386	51.057	51.665	0.75406					18	11	2	0	0	0	0.49205	1	19116	19116		21.537	0	1	3967900	+		50300	25240	36591	36882	49122	49122					0.03537715515176387
SLTELLVNY	9	Unmodified	_SLTELLVNY_					0	0	0			REV__ENST00000515119.5_1_4:3517776-3534065:-|nuORF	REV__ENST00000515119.5_1_4:3517776-3534065:-|nuORF	MSMS	A375_MHC_IP_R2	2	526.1848754882812	2	526.28714	1050.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.16	1	59.907	59.407	60.407	0.74714								0	0	0	0.1499	1	22388	22388		21.747	0.20967	1		+		50301	20431	36592	36883	49123	49123					0.036469035205982436
SLTGCRSDII	10	Unmodified	_SLTGCRSDII_					0	0	0		ENSG00000131788|ENST00000393045|PIAS3	ENSG00000131788|ENST00000393045|PIAS3	ENSG00000131788|ENST00000393045|PIAS3	MULTI-SECPEP	A375_MHC_IP_R2	2	533.1724853515625	2	532.773874	1063.53319	-0.6323	-0.00033687	-1.3883	-0.00073966	-2.0206	-0.0010765	532.7728756659915	89.139	0.80563	89.871	89.482	90.287	0.7318					18	15	2	0	0	0	0.77204	1	33926	33926		16.149	16.149	1	1841400			50302	4352	36593	36884	49124	49124					0.003968913575818078
SLTGHISTV	9	Unmodified	_SLTGHISTV_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-MSMS	A375_MHC_IP_R1	1	458.15087890625	2	457.750724	913.486896	-0.11636	-5.3263E-05	0.40666	0.00018615	0.2903	0.00013289	457.75083386137686	38.665	1.0201	38.665	38.371	39.391	0					41	19	4	0	0	0	0.0019764	1	13094	13094		144.35	55.447	1	62560000			50303	7617	36594	36885	49125	49125					0.02669194517818596
SLTGHISTV	9	Unmodified	_SLTGHISTV_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-MSMS	A375_MHC_IP_R2	2	458.1505126953125	2	457.750724	913.486896	-0.49359	-0.00022594	0.020921	9.5764E-06	-0.47267	-0.00021637	457.75066619469044	37.786	1.0219	38.561	38.279	39.3	0.77451					46	19	5	0	0	0	0.0028027	1	13802	13802		139.14	53.866	1	67372000			50304	7617	36594	36885	49126	49126					0.02669194517818596
SLTGNEQIN	9	Unmodified	_SLTGNEQIN_					0	0	0			REV__HEPACAM2|p.G128E|2|0.29|ENSG00000188175|chr7:93219148-93219148|C/T|missense_variant	REV__HEPACAM2|p.G128E|2|0.29|ENSG00000188175|chr7:93219148-93219148|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	488.64044189453125	2	488.240721	974.466889	-0.28443	-0.00013887	-0.70823	-0.00034579	-0.99266	-0.00048466	488.24033437495973	99.554	1.7703	99.554	99.117	100.89	0					81	34	4	0	0	0	0.58047	1	36730	36730		15.847	0	1	37531000	+		50305	26730	36595	36886	49127	49127					-0.021366012127941758
SLTGRLDEV	9	Unmodified	_SLTGRLDEV_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;STAT6|p.R254Q|1|0.27|ENSG00000166888|chr12:57105519-57105519|C/T|missense_variant	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	MULTI-SECPEP	A375_MHC_IP_R2	2	495.60162353515625	2	495.266739	988.518924	-0.57684	-0.00028569	-0.1085	-5.3737E-05	-0.68535	-0.00033943	495.2666217695232	48.794	1.2171	49.551	49.08	50.297	0.75737					70	23	4	0	0	0	0.044425	1	18398	18398		87.258	23.298	1	64530000			50306	7128	36596	36887	49128	49128					0.024205622009503713
SLTHFDSTLY	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SLTHFDSTLY_					1	0	0			REV__ENST00000481982.1_1_1:101490795-101490999:-|nuORF	REV__ENST00000481982.1_1_1:101490795-101490999:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	613.68994140625	2	613.290411	1224.56627	-0.22859	-0.00014019	-0.1216	-7.4574E-05	-0.35019	-0.00021477	613.2903085772139	72.652	1.2681	72.652	72.271	73.539	0					67	24	4	0	0	0	0.14594	1	26365	26365		54.774	12.934	1	60059000	+		50307	25271	36597	36888	49129	49129					-0.03703203318696069
SLTHFDSTLY	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SLTHFDSTLY_					1	0	0			REV__ENST00000481982.1_1_1:101490795-101490999:-|nuORF	REV__ENST00000481982.1_1_1:101490795-101490999:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	613.6902465820312	2	613.290411	1224.56627	-0.79998	-0.00049062	-0.11683	-7.1653E-05	-0.91681	-0.00056227	613.2903123977513	72.012	1.0135	72.746	72.364	73.377	0.73421					60	19	4	0	0	0	0.38158	1	27254	27254		52.268	10.429	1	61382000	+		50308	25271	36597	36888	49130	49130					-0.03703203318696069
SLTHHGPLF	9	Unmodified	_SLTHHGPLF_					0	0	0		ENST00000474961.5_1_6:31498213-31499248:-|nuORF	ENST00000474961.5_1_6:31498213-31499248:-|nuORF	ENST00000474961.5_1_6:31498213-31499248:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	504.6556091308594	2	504.766709	1007.51886	-0.62302	-0.00031448	1.1193	0.00056499	0.4963	0.00025051	504.76742576413545	88.008	0.45609	88.739	88.57	89.026	0.7318					9	8	2	0	0	0	0.62767	1	33523	33523		11.64	9.3376	1	613310			50309	12413	36598	36889	49131	49131					0.015406069916252818
SLTIEGIIYV	10	Unmodified	_SLTIEGIIYV_					0	0	0		ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	MULTI-SECPEP	A375_MHC_IP_R1	1	554.71875	2	554.31844	1106.62233	-0.39851	-0.0002209	0.052418	2.9056E-05	-0.34609	-0.00019184	554.3184319351531	79.025	0.60863	79.025	78.657	79.265	0					26	11	3	0	0	0	0.57563	1	28833	28833		39.957	3.4511	1	4644000			50310	9456	36599	36890	49132	49132					0.07328049588772956
SLTIEGIIYV	10	Unmodified	_SLTIEGIIYV_					0	0	0		ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	MULTI-SECPEP	A375_MHC_IP_R2	2	554.084716796875	2	554.31844	1106.62233	-0.75694	-0.00041959	0.27411	0.00015194	-0.48283	-0.00026764	554.8200580696129	78.119	0.51007	78.862	78.572	79.082	0.74294					21	9	3	0	0	0	0.57563	1	29708	29708		39.957	14.558	1	4074400			50311	9456	36599	36890	49133	49133					0.07328049588772956
SLTINYPEV	9	Unmodified	_SLTINYPEV_					0	0	0			REV__ENST00000478631.6_2_1:53460811-53461279:+|nuORF	REV__ENST00000478631.6_2_1:53460811-53461279:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	518.7312622070312	2	518.27149	1034.52843	-0.356	-0.0001845	-1.0066	-0.00052167	-1.3626	-0.00070617	518.2713799678384	71.419	0.35696	71.419	71.159	71.516	0					12	6	3	0	0	0	0.4867	1	25972	25972		20.454	0	1	1890100	+		50312	25220	36600	36891	49134	49134					0.012543304864720994
SLTISLRKL	9	Unmodified	_SLTISLRKL_					0	0	0		ENST00000359314.5_1_6:47471138-47501404:+|nuORF	ENST00000359314.5_1_6:47471138-47501404:+|nuORF	ENST00000359314.5_1_6:47471138-47501404:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	516.9280395507812	2	515.834591	1029.65463	-0.57166	-0.00029488	0.14613	7.5379E-05	-0.42553	-0.0002195	515.8346295785649	59.062	0.81303	59.062	58.786	59.599	0					29	15	3	0	0	0	0.70307	1	21194	21194		6.7232	0	1	7398700			50313	11013	36601	36892	49135	49135					0.14098881782433637
SLTKLADLY	9	Unmodified	_SLTKLADLY_					0	0	0			REV__ENST00000507493.1_1_4:514867-515974:+|nuORF	REV__ENST00000507493.1_1_4:514867-515974:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	512.689208984375	2	512.289682	1022.56481	-0.69708	-0.00035711	-0.053445	-2.7379E-05	-0.75052	-0.00038449	512.2893135222434	73.355	0.45852	74.09	73.887	74.345	0.73541					14	8	2	0	0	0	0.56537	1	27858	27858		29.082	9.8246	1	2354000	+		50314	21273	36602	36893	49136	49136					0.054432073831776506
SLTLATVNAR	10	Unmodified	_SLTLATVNAR_					0	0	0		ENSG00000105518|ENST00000354882|TMEM205	ENSG00000105518|ENST00000354882|TMEM205	ENSG00000105518|ENST00000354882|TMEM205	MULTI-MSMS	A375_MHC_IP_R2	2	523.7037353515625	2	523.303655	1044.59276	-0.46357	-0.00024259	-0.10116	-5.2938E-05	-0.56473	-0.00029553	523.3034537104251	118.52	2.2827	119.12	118.44	120.73	0.60909					103	44	4	0	0	0	0.71564	1	45367	45367		5.2969	0	1	84574000			50315	2614	36603	36894	49137	49137					0.07224530363282611
SLTLGARGR	9	Unmodified	_SLTLGARGR_					0	0	0		nc|ENSG00000019144|Q86UU1-3|PHLDB1;ENST00000532517.5_1_11:118498004-118527530:+|nuORF;nc|ENSG00000019144|Q86UU1-2|PHLDB1;ENSG00000019144|ENST00000600882|PHLDB1	nc|ENSG00000019144|Q86UU1-3|PHLDB1	nc|ENSG00000019144|Q86UU1-3|PHLDB1	MULTI-MSMS	A375_MHC_IP_R2	2	466.177490234375	2	465.777608	929.540663	-0.46747	-0.00021774	0.69979	0.00032595	0.23232	0.00010821	465.77766589526306	111.29	2.7072	112.02	110.37	113.08	0.73691					133	52	4	0	0	0	0.70307	1	41804	41804		6.7232	0	1	8671100			50316	1051	36604	36895	49138	49138					0.07307411740180214
SLTLIGVTSSR	11	Unmodified	_SLTLIGVTSSR_					0	0	0			REV__ENST00000458295.5_2_21:40834466-40883616:+|nuORF	REV__ENST00000458295.5_2_21:40834466-40883616:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	567.7297973632812	2	567.32987	1132.64519	-0.12809	-7.2672E-05	0.16445	9.3298E-05	0.036357	2.0626E-05	567.3298257780715	125.88	1.6121	125.88	125.45	127.06	0					107	31	4	0	0	0	0.73715	1	47936	47936		4.5289	2.6846	1	258280000	+		50317	24219	36605	36896	49139	49139					0.08417068706239661
SLTLKMEV	8	Oxidation (M)	_SLTLKM(Oxidation (M))EV_		SLTLKM(1)EV		SLTLKM(48)EV	0	0	1			REV__ENST00000460803.1_1_1:43851595-43852591:-|nuORF	REV__ENST00000460803.1_1_1:43851595-43852591:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	469.1573791503906	2	468.757161	935.499769	-0.25447	-0.00011928	0.58086	0.00027228	0.3264	0.000153	468.757365380024	43.592	0.35645	43.592	43.4	43.757	0					11	6	2	0	0	0	0.51581	1	15177	15177		48.346	8.3885	1	1812600	+		50318	24967	36606	36897	49140	49140		487			0.029438895856969793
SLTLLEADI	9	Unmodified	_SLTLLEADI_					0	0	0		ENST00000523409.5_2_8:59347484-59360107:+|nuORF;ENST00000451057.1_1_7:156990296-156991186:-|nuORF;ENSG00000215114|ENST00000399598|UBXN2B	ENST00000523409.5_2_8:59347484-59360107:+|nuORF	ENST00000523409.5_2_8:59347484-59360107:+|nuORF	MSMS	A375_MHC_IP_R2	2	487.671142578125	2	487.773865	973.533177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.27	1	111.01	110.51	111.51	0.73692								0	0	0	0.040533	1	41601	41601		57.471	6.6163	1				50319	9639	36607	36898	49141	49141					0.04535214629231632
SLTLNCPLWH	10	Unmodified	_SLTLNCPLWH_					0	0	0		ENST00000379979.8_1_5:95150348-95150648:-|nuORF	ENST00000379979.8_1_5:95150348-95150648:-|nuORF	ENST00000379979.8_1_5:95150348-95150648:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	592.6551513671875	2	592.300059	1182.58556	-0.090298	-5.3483E-05	-3.2471	-0.0019232	-3.3374	-0.0019767	592.2984776859868	108.19	0.25398	108.19	108.1	108.36	0					6	4	2	0	0	0	0.91643	1	39664	39664		13.906	7.7003	1	1380400			50320	11343	36608	36899	49142	49142					0.0015747449119771773
SLTLNLKKMF	10	Unmodified	_SLTLNLKKMF_					0	0	0			REV__ENSG00000118412|ENST00000551025|CASP8AP2	REV__ENSG00000118412|ENST00000551025|CASP8AP2	MULTI-SECPEP	A375_MHC_IP_R2	2	398.62158203125	3	398.902015	1193.68422	-0.12447	-4.9652E-05	0.31448	0.00012545	0.19001	7.5795E-05	399.23717496307034	40.229	0.25357	41.003	40.879	41.133	0.77451					6	4	2	0	0	0	0.93961	1	14884	14884		0.56317	0	1	1029300	+		50321	18038	36609	36900	49143	49143					0.09512077736235369
SLTLPITCHI	10	Unmodified	_SLTLPITCHI_					0	0	0		ENSG00000152193|ENST00000282003|OBI1	ENSG00000152193|ENST00000282003|OBI1	ENSG00000152193|ENST00000282003|OBI1	MULTI-SECPEP	A375_MHC_IP_R1	1	366.64501953125	3	366.538965	1096.59507	0.40938	0.00015006	1.2055	0.00044188	1.6149	0.00059194	366.53942555727474	35.873	0.50816	35.873	35.625	36.133	0					14	9	2	0	0	0	0.91556	1	12043	12043		3.3196	1.0369	1	2516300			50322	5949	36610	36901	49144	49144					0.05063242776714105
SLTLRRDP	8	Unmodified	_SLTLRRDP_					0	0	0			REV__ENSG00000240445|ENST00000395675|FOXO3B	REV__ENSG00000240445|ENST00000395675|FOXO3B	MULTI-MSMS	A375_MHC_IP_R1	1	479.6487121582031	2	479.277441	956.540328	-0.2405	-0.00011527	0.24507	0.00011745	0.0045651	2.188E-06	479.2774316255571	109.94	4.5331	109.94	108.36	112.89	0					246	88	4	0	0	0	0.77752	1	40529	40529		3.9444	0	1	18064000	+		50323	22779	36611	36902	49145	49145					0.06031992020314192
SLTLVWRLL	9	Unmodified	_SLTLVWRLL_					0	0	0			REV__ENSG00000100292|ENST00000216117|HMOX1	REV__ENSG00000100292|ENST00000216117|HMOX1	MSMS	A375_MHC_IP_R2	2	367.6242370605469	3	367.565732	1099.67537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.354	1	68.09	67.59	68.59	0.73631								0	0	0	0.15486	1	25516	25516		7.609	0	1		+		50324	17070	36612	36903	49146	49146					0.1295147216208079
SLTPELPEV	9	Unmodified	_SLTPELPEV_					0	0	0			REV__ENST00000590633.1_1_19:12848319-12856427:+|nuORF	REV__ENST00000590633.1_1_19:12848319-12856427:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	493.16595458984375	2	492.76604	983.517527	-0.084297	-4.1539E-05	0.10405	5.1271E-05	0.01975	9.732E-06	492.7660227574992	108.14	1.574	108.14	107.44	109.02	0					57	30	3	0	0	0	0.17328	1	39763	39763		39.957	0	1	2154500	+		50325	22364	36613	36904	49147	49147					0.02510928112201327
SLTPFVRTN	9	Unmodified	_SLTPFVRTN_					0	0	0		nc|ENSG00000166833|Q8IVL1-4|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;nc|ENSG00000166833|Q8IVL1-5|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	MULTI-SECPEP	A375_MHC_IP_R1	1	518.1845703125	2	517.785099	1033.55564	-0.35012	-0.00018129	-0.051355	-2.6591E-05	-0.40148	-0.00020788	517.7848337129556	72.276	0.5065	72.276	72.018	72.524	0					15	9	2	0	0	0	0.47368	1	26272	26272		34.102	0	1	2757300			50326	7116	36614	36905	49148	49148					0.04020858817534645
SLTPVTLKQF	10	Unmodified	_SLTPVTLKQF_					0	0	0		ENST00000311191.10_1_13:47324854-47324926:+|nuORF	ENST00000311191.10_1_13:47324854-47324926:+|nuORF	ENST00000311191.10_1_13:47324854-47324926:+|nuORF	MSMS	A375_MHC_IP_R2	2	378.584228515625	3	378.557013	1132.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.737	1	23.368	22.868	23.868	0.63014								0	0	0	0.15353	1	7240	7240		5.4027	0	1				50327	10626	36615	36906	49149	49149					0.0881915819995811
SLTQFKRRKRL	11	Unmodified	_SLTQFKRRKRL_					0	0	0			REV__CCDC27|p.S206F|1|0.44|ENSG00000162592|chr1:3756796-3756796|C/T|missense_variant	REV__CCDC27|p.S206F|1|0.44|ENSG00000162592|chr1:3756796-3756796|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	716.6807861328125	2	716.946602	1431.87865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.43	1	101.19	100.69	101.69	0.76278								0	0	0	0.16353	1	38080	38080		1.0715	0.76443	1		+		50328	15594	36616	36907	49150	49150					0.17998589936382814
SLTQLFSHSY	10	Unmodified	_SLTQLFSHSY_					0	0	0		ENST00000471717.1_1_7:99772169-99774834:-|nuORF;ENSG00000213420|ENST00000292377|GPC2	ENST00000471717.1_1_7:99772169-99774834:-|nuORF	ENST00000471717.1_1_7:99772169-99774834:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	592.1925659179688	2	591.793121	1181.57169	-0.74153	-0.00043883	-0.0028263	-1.6726E-06	-0.74435	-0.0004405	591.7930167771281	55.866	0.86751	56.616	56.388	57.255	0.75015					25	16	2	0	0	0	0.85226	1	21102	21102		14.838	3.3436	1	2830600			50329	9565	36617	36908	49151	49151					-0.011834797362325844
SLTQRGVIY	9	Unmodified	_SLTQRGVIY_					0	0	0		ENST00000504517.5_1_5:148386573-148411207:-|nuORF;ENST00000510779.1_1_5:148384276-148408226:-|nuORF;nc|ENSG00000169247|Q8TF17-5|SH3TC2;ENSG00000169247|ENST00000515425|SH3TC2;nc|ENSG00000169247|Q8TF17-4|SH3TC2	ENST00000504517.5_1_5:148386573-148411207:-|nuORF	ENST00000504517.5_1_5:148386573-148411207:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	519.393310546875	2	518.792924	1035.57129	-0.54636	-0.00028345	-0.013784	-7.1513E-06	-0.56015	-0.0002906	518.7929144710193	81.322	1.2657	81.322	80.948	82.214	0					59	24	4	0	0	0	0.65721	1	30019	30019		10.824	0.75	1	37050000			50330	7395	36618	36909	49152	49152					0.05493145334594374
SLTQYEAFL	9	Unmodified	_SLTQYEAFL_					0	0	0			REV__ENSG00000283528|ENST00000636941|TCAF2C	REV__ENSG00000283528|ENST00000636941|TCAF2C	MULTI-MSMS	A375_MHC_IP_R2	2	536.6690063476562	2	536.27149	1070.52843	-0.82855	-0.00044433	-2.532	-0.0013579	-3.3606	-0.0018022	536.2701513153056	126.51	0.2514	126.81	126.68	126.93	0.2951					8	4	2	0	0	0	0.10411	1	49520	49520		49.933	3.912	1	18942000	+		50331	20987	36619	36910	49153	49153					-0.004016695135305781
SLTRNKEFTV	10	Unmodified	_SLTRNKEFTV_					0	0	0			REV__CATSPERB|p.R320K|1|0.28|ENSG00000133962|chr14:91674195-91674195|C/T|missense_variant	REV__CATSPERB|p.R320K|1|0.28|ENSG00000133962|chr14:91674195-91674195|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	399.6048583984375	3	398.887422	1193.64044	-0.50534	-0.00020157	0.41589	0.00016589	-0.089445	-3.5678E-05	398.88759622494126	37.251	0.86707	38.022	37.816	38.684	0.7709					24	16	2	0	0	0	0.92772	1	13782	13782		7.0371	1.6344	1	2279000	+		50332	15586	36620	36911	49154	49154					0.05136184563457391
SLTRPLIGL	9	Unmodified	_SLTRPLIGL_					0	0	0			REV__ENST00000416543.5_1_4:106629495-106629642:-|nuORF	REV__ENST00000416543.5_1_4:106629495-106629642:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	485.6429138183594	2	485.30821	968.601866	-0.086972	-4.2208E-05	-0.30921	-0.00015006	-0.39618	-0.00019227	485.30801403252957	70.315	0.35764	70.315	70.085	70.442	0					9	6	2	0	0	0	0.53748	1	25495	25495		24.021	10.978	1	980480	+		50333	24534	36621	36912	49155	49155					0.11630923719621933
SLTRVQLSPDL	11	Unmodified	_SLTRVQLSPDL_					0	0	0		ENSG00000109758|ENST00000382774|HGFAC	ENSG00000109758|ENST00000382774|HGFAC	ENSG00000109758|ENST00000382774|HGFAC	MSMS	A375_MHC_IP_R2	2	615.182861328125	2	614.848427	1227.6823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.35	1	102.12	101.62	102.62	0.76428								0	0	0	0.15422	1	38417	38417		22.736	7.898	1				50334	2889	36622	36913	49156	49156					0.07756740251988958
SLTRWHRM	8	Unmodified	_SLTRWHRM_					0	0	0		ENSG00000204394|ENST00000375663|VARS1;nc|ENSG00000204394|P26640-2|VARS1	ENSG00000204394|ENST00000375663|VARS1	ENSG00000204394|ENST00000375663|VARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	363.2582702636719	3	362.859032	1085.55527	-0.43616	-0.00015826	-1.2248	-0.00044444	-1.661	-0.0006027	362.858584680953	20.499	0.3041	21.109	21.008	21.312	0.61029					9	5	2	0	0	0	0.972	1	6435	6435		7.2892	7.2892	1	903520			50335	9439	36623	36914	49157	49157					0.01591160616681009
SLTSAWEDHL	10	Unmodified	_SLTSAWEDHL_					0	0	0		nc|ENSG00000282100|Q58FF6|HSP90AB4P	nc|ENSG00000282100|Q58FF6|HSP90AB4P	nc|ENSG00000282100|Q58FF6|HSP90AB4P	MULTI-SECPEP	A375_MHC_IP_R2	2	580.1764526367188	2	579.774928	1157.5353	-0.58229	-0.00033759	1.5655	0.00090761	0.98317	0.00057002	579.776508134306	58.355	1.0143	59.104	58.578	59.592	0.74894					37	19	3	0	0	0	0.72086	1	22065	22065		13.042	0	1	7386400			50336	14942	36624	36915	49158	49158					-0.037163566329581954
SLTSFIRQLN	10	Unmodified	_SLTSFIRQLN_					0	0	0		ENSG00000283697|ENST00000431993|HSFX3	ENSG00000283697|ENST00000431993|HSFX3	ENSG00000283697|ENST00000431993|HSFX3	MULTI-MSMS	A375_MHC_IP_R1	1	393.92767333984375	3	393.555784	1177.64552	-0.24486	-9.6368E-05	0.19862	7.8167E-05	-0.046247	-1.8201E-05	393.55584231552575	23.614	0.35596	23.614	23.432	23.787	0					12	6	3	0	0	0	0.71076	1	6475	6475		7.4771	0	1	11036000			50337	10049	36625	36916	49159	49159					0.06380488426111697
SLTSKIPAL	9	Unmodified	_SLTSKIPAL_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MSMS	A375_MHC_IP_R1	1	465.6868591308594	2	465.286943	928.559333	-0.56483	-0.00026281	0.46637	0.000217	-0.098463	-4.5814E-05	465.28705331963306	68.274	0.81116	68.274	67.804	68.616	0					38	15	3	0	0	0	0.029064	1	24703	24703		75.761	7.6801	1	6287500			50338	5409	36626	36917	49160	49160					0.09219528591370363
SLTSKIPAL	9	Unmodified	_SLTSKIPAL_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MSMS	A375_MHC_IP_R2	2	465.6867980957031	2	465.286943	928.559333	-0.64591	-0.00030053	0.1021	4.7508E-05	-0.54381	-0.00025303	465.2869507056777	67.444	0.91402	68.18	67.648	68.562	0.73631					38	17	3	0	0	0	0.015356	1	25456	25456		89.401	4.1287	1	7865100			50339	5409	36626	36917	49161	49161					0.09219528591370363
SLTSLRKLAK	10	Unmodified	_SLTSLRKLAK_					0	0	0		ENST00000506381.1_1_4:169519393-169519789:-|nuORF	ENST00000506381.1_1_4:169519393-169519789:-|nuORF	ENST00000506381.1_1_4:169519393-169519789:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	373.30816650390625	3	372.908157	1115.70264	0.24739	9.2252E-05	-0.10753	-4.0098E-05	0.13986	5.2154E-05	372.9080643069663	33.197	1.1144	33.197	32.887	34.001	0					36	21	3	0	0	0	0.70312	1	10754	10754		10.899	5.1155	1	30452000			50340	12855	36627	36918	49162	49162					0.14941955702465748
SLTSLRKLAK	10	Unmodified	_SLTSLRKLAK_					0	0	0		ENST00000506381.1_1_4:169519393-169519789:-|nuORF	ENST00000506381.1_1_4:169519393-169519789:-|nuORF	ENST00000506381.1_1_4:169519393-169519789:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	372.9521484375	3	372.908157	1115.70264	0.41418	0.00015445	-0.35367	-0.00013189	0.060515	2.2567E-05	372.9079877448104	32.078	1.0141	32.815	32.555	33.569	0.73691					44	19	4	0	0	0	0.70442	1	11420	11420		10.315	2.8382	1	33286000			50341	12855	36627	36918	49163	49163					0.14941955702465748
SLTSLSLSV	9	Unmodified	_SLTSLSLSV_					0	0	0		ENST00000467638.1_1_7:139757417-139762332:-|nuORF	ENST00000467638.1_1_7:139757417-139762332:-|nuORF	ENST00000467638.1_1_7:139757417-139762332:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	906.9160766601562	1	906.514239	905.506963	-0.30709	-0.00027838	0.10777	9.7699E-05	-0.19932	-0.00018069	906.5145414055655	109.3	0.55775	110.04	109.72	110.28	0.74684					21	10	3	0	0	0	0.01001	1	41198	41198		123.45	0	1	5055800			50342	12282	36628	36919	49164	49164					0.0504294545777384
SLTSLSLSV	9	Unmodified	_SLTSLSLSV_					0	0	0		ENST00000467638.1_1_7:139757417-139762332:-|nuORF	ENST00000467638.1_1_7:139757417-139762332:-|nuORF	ENST00000467638.1_1_7:139757417-139762332:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	906.514239	905.506963	0.025374	2.3002E-05	0.40079	0.00036332	0.42616	0.00038632	906.5143402765634	110.19	0.71059	110.19	109.78	110.49	0	0.07521	0.00019639	NaN	123.45	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5765800			50343	12282	36628	36919							0.0504294545777384
SLTSSCNVSR	10	Unmodified	_SLTSSCNVSR_					0	0	0		ENST00000590513.2_1_17:40704842-40705703:-|nuORF	ENST00000590513.2_1_17:40704842-40705703:-|nuORF	ENST00000590513.2_1_17:40704842-40705703:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	352.2380676269531	3	351.837962	1052.49206	-0.080738	-2.8407E-05	0.57428	0.00020205	0.49355	0.00017365	351.8380828308069	47.489	0.86421	48.25	47.919	48.783	0.76128					31	16	3	0	0	0	0.83447	1	17817	17817		8.7518	0	1	8821100			50344	13784	36629	36920	49165	49165					-0.032088696818846074
SLTSSRKKV	9	Unmodified	_SLTSSRKKV_					0	0	0			REV__nc|ENSG00000008294|O60271-9|SPAG9	REV__nc|ENSG00000008294|O60271-9|SPAG9	MSMS	A375_MHC_IP_R2	2	503.5072021484375	2	503.306198	1004.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.85	1	106.6	106.1	107.1	0.75977								0	0	0	0.15486	1	40023	40023		4.756	0	1		+		50345	16170	36630	36921	49166	49166					0.09572834225912175
SLTTKKPS	8	Unmodified	_SLTTKKPS_					0	0	0			REV__nc|ENSG00000197646|Q9BQ51-3|PDCD1LG2	REV__nc|ENSG00000197646|Q9BQ51-3|PDCD1LG2	MSMS	A375_MHC_IP_R2	2	431.28814697265625	2	431.255643	860.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.575	1	30.274	29.774	30.774	0.69872								0	0	0	0.16876	1	10336	10336		5.2307	0	1		+		50346	27443	36631	36922	49167	49167					0.06090382523188964
SLTVDNLSLKL	11	Unmodified	_SLTVDNLSLKL_					0	0	0			REV__ENSG00000181544|ENST00000650831|FANCB	REV__ENSG00000181544|ENST00000650831|FANCB	MULTI-SECPEP	A375_MHC_IP_R1	1	602.2528686523438	2	601.853178	1201.6918	-0.44604	-0.00026845	0.2893	0.00017412	-0.15674	-9.4332E-05	601.8533643130455	64.978	0.76224	64.978	64.7	65.462	0					33	14	4	0	0	0	0.12692	1	23492	23492		73.196	2.2676	1	10979000	+		50347	21655	36632	36923	49168	49168					0.09902508537516042
SLTVDNLSLKL	11	Unmodified	_SLTVDNLSLKL_					0	0	0			REV__ENSG00000181544|ENST00000650831|FANCB	REV__ENSG00000181544|ENST00000650831|FANCB	MULTI-SECPEP	A375_MHC_IP_R2	2	602.2530517578125	2	601.853178	1201.6918	-0.40918	-0.00024627	-0.12215	-7.3516E-05	-0.53133	-0.00031978	601.8531105873896	64.114	0.55898	64.855	64.547	65.106	0.74022					23	10	3	0	0	0	0.14752	1	24286	24286		61.09	2.0375	1	7489400	+		50348	21655	36632	36923	49169	49169					0.09902508537516042
SLTVTPKRW	9	Unmodified	_SLTVTPKRW_					0	0	0		nc|ENSG00000177602|Q8TF76-2|HASPIN;ENSG00000177602|ENST00000325418|HASPIN	nc|ENSG00000177602|Q8TF76-2|HASPIN	nc|ENSG00000177602|Q8TF76-2|HASPIN	MULTI-SECPEP	A375_MHC_IP_R2	2	362.9254455566406	3	363.213469	1086.61858	0.038808	1.4096E-05	-0.33711	-0.00012244	-0.2983	-0.00010835	363.2134907891796	46.498	0.30506	47.264	47.008	47.313	0.76519					8	5	2	0	0	0	0.78798	1	17374	17374		0.86438	0	1	759280			50349	8093	36633	36924	49170	49170					0.07873424605554646
SLTVYLGVAL	10	Unmodified	_SLTVYLGVAL_					0	0	0		PCDHB12|p.V691G|1|0.45|ENSG00000120328|chr5:141210979-141210979|T/G|missense_variant	PCDHB12|p.V691G|1|0.45|ENSG00000120328|chr5:141210979-141210979|T/G|missense_variant	PCDHB12|p.V691G|1|0.45|ENSG00000120328|chr5:141210979-141210979|T/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	517.7052001953125	2	518.307875	1034.6012	-0.52473	-0.00027197	0.59771	0.0003098	0.072986	3.7829E-05	518.3080892895766	74.499	1.4674	74.499	74.146	75.614	0					38	28	2	0	0	0	0.2728	1	27053	27053		39.957	7.6518	1	1559900			50350	15130	36634	36925	49171	49171					0.08528084279896575
SLTWKRWRRCW	11	Unmodified	_SLTWKRWRRCW_					0	0	0		ENST00000415950.4_2_19:35528037-35528250:+|nuORF	ENST00000415950.4_2_19:35528037-35528250:+|nuORF	ENST00000415950.4_2_19:35528037-35528250:+|nuORF	MSMS	A375_MHC_IP_R1	1	789.8123168945312	2	789.417154	1576.81975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.29	1	138.29	137.79	138.79	0								0	0	0	0.16302	1	53200	53200		2.9952	0.26005	1				50351	11685	36635	36926	49172	49172					0.05441790370423405
SLTYKSMVIGK	11	Unmodified	_SLTYKSMVIGK_					0	0	0			REV__tr|U7SYZ0|U7SYZ0_FUSNUResponseregulatorNasTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00817PE=4SV=1	REV__tr|U7SYZ0|U7SYZ0_FUSNUResponseregulatorNasTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00817PE=4SV=1	MSMS	A375_MHC_IP_R1	1	409.603271484375	3	409.565291	1225.67404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.738	1	36.738	36.238	37.238	0								0	0	0	0.16182	1	12322	12322		9.2438	2.6203	1		+		50352	28638	36636	36927	49173	49173					0.0702347001099497
SLTYNYYKSNK	11	Unmodified	_SLTYNYYKSNK_					0	0	0			REV__nc|ENSG00000135677|P15586-2|GNS	REV__nc|ENSG00000135677|P15586-2|GNS	MSMS	A375_MHC_IP_R2	2	690.9108276367188	2	690.843342	1379.67213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.857	1	71.591	71.091	72.091	0.73421								0	0	0	0.16179	1	26868	26868		9.3831	0	1		+		50353	18874	36637	36928	49174	49174					-0.0025186747325278702
SLVAEKIKRAM	11	Unmodified	_SLVAEKIKRAM_					0	0	0			REV__ENST00000275569.8_1_7:76239477-76254863:-|nuORF	REV__ENST00000275569.8_1_7:76239477-76254863:-|nuORF	MSMS	A375_MHC_IP_R2	2	623.2301635742188	2	623.371015	1244.72748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.023	1	95.774	95.274	96.274	0.75045								0	0	0	0.16249	1	36102	36102		5.7319	0.43497	1		+		50354	23299	36638	36929	49175	49175					0.11490267513522667
SLVAHTKPV	9	Unmodified	_SLVAHTKPV_					0	0	0		nc|ENSG00000265992|Q1W209|ESRG	nc|ENSG00000265992|Q1W209|ESRG	nc|ENSG00000265992|Q1W209|ESRG	MULTI-SECPEP	A375_MHC_IP_R2	2	476.642333984375	2	476.284734	950.554916	-0.63027	-0.00030019	-0.08262	-3.935E-05	-0.71289	-0.00033954	476.2846004154509	72.684	0.96589	73.42	72.973	73.938	0.7354					29	18	2	0	0	0	0.65246	1	27735	27735		6.7232	0	1	1549400			50355	14933	36639	36930	49176	49176					0.07766064168458797
SLVALAPPHLA	11	Unmodified	_SLVALAPPHLA_					0	0	0			REV__ENST00000530122.1_1_20:57266543-57280604:+|nuORF	REV__ENST00000530122.1_1_20:57266543-57280604:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	363.2852783203125	3	363.553603	1087.63898	0.053701	1.9523E-05	0.56003	0.0002036	0.61373	0.00022312	363.5540126627489	32.271	0.56165	32.271	31.973	32.535	0					14	10	2	0	0	0	0.90584	1	10412	10412		9.7643	9.7643	1	2255800	+		50356	22675	36640	36931	49177	49177					0.09866595265361866
SLVAQSITV	9	Unmodified	_SLVAQSITV_					0	0	0		ENSG00000160785|ENST00000359511|SLC25A44	ENSG00000160785|ENST00000359511|SLC25A44	ENSG00000160785|ENST00000359511|SLC25A44	MULTI-MSMS	A375_MHC_IP_R2	2	459.6683349609375	2	459.26875	916.522947	-0.188	-8.6341E-05	0.39732	0.00018248	0.20933	9.6137E-05	459.26880499761387	94.165	0.75901	94.91	94.515	95.274	0.74473					33	14	3	0	0	0	0.009271	1	35751	35751		103.75	3.3768	1	3993800			50357	6441	36641	36932	49178	49178					0.06134651694662807
SLVAVAPW	8	Unmodified	_SLVAVAPW_					0	0	0		ENST00000545366.1_1_11:64055563-64055821:+|nuORF	ENST00000545366.1_1_11:64055563-64055821:+|nuORF	ENST00000545366.1_1_11:64055563-64055821:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	421.6551818847656	2	421.742171	841.469789	-0.32472	-0.00013695	-3.4452	-0.001453	-3.7699	-0.0015899	421.7420686287458	54.581	0.76101	55.332	54.865	55.626	0.75075					18	14	2	0	0	0	0.97144	1	20670	20670		5.2307	0.90143	1	1272900			50358	13324	36642	36933	49179	49179					0.04271318702649296
SLVCHRRIY	9	Unmodified	_SLVCHRRIY_					0	0	0		ZNF808|p.H729Y|1|0.43|ENSG00000198482|chr19:52555101-52555101|C/T|missense_variant	ZNF808|p.H729Y|1|0.43|ENSG00000198482|chr19:52555101-52555101|C/T|missense_variant	ZNF808|p.H729Y|1|0.43|ENSG00000198482|chr19:52555101-52555101|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	573.4630737304688	2	573.813667	1145.61278	-0.7287	-0.00041814	-0.5341	-0.00030647	-1.2628	-0.00072462	573.8132394916107	52.771	0.66009	53.522	53.233	53.893	0.75105					26	12	3	0	0	0	0.71341	1	19978	19978		13.042	2.2185	1	7020800			50359	30249	36643	36934	49180	49180					0.04580002822262941
SLVDGCVQTL	10	Unmodified	_SLVDGCVQTL_					0	0	0			REV__ENSG00000151503|ENST00000534548|NCAPD3	REV__ENSG00000151503|ENST00000534548|NCAPD3	MSMS	A375_MHC_IP_R1	1	517.7057495117188	2	517.762975	1033.5114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.487	1	77.487	76.987	77.987	0								0	0	0	0.12703	1	28268	28268		36.127	8.4982	1		+		50360	19759	36644	36935	49181	49181					-0.004019133909878292
SLVDGYFRL	9	Unmodified	_SLVDGYFRL_					0	0	0		ENSG00000105397|ENST00000525621|TYK2;ENST00000494904.1_1_1:65325735-65330472:-|nuORF;ENSG00000162434|ENST00000342505|JAK1	ENSG00000105397|ENST00000525621|TYK2;ENSG00000162434|ENST00000342505|JAK1	ENSG00000105397|ENST00000525621|TYK2	MULTI-MSMS	A375_MHC_IP_R1	1	535.6874389648438	2	535.287474	1068.5604	-0.49262	-0.00026369	0.015876	8.4983E-06	-0.47674	-0.00025519	535.2874411049535	106.79	0.91859	106.79	106.47	107.39	0					38	17	4	0	0	0	0.27064	1	39170	39170		32.786	11.249	1	7656700			50361	2599;6535	36645	36936	49182	49182					0.028857429602794582
SLVDGYFRL	9	Unmodified	_SLVDGYFRL_					0	0	0		ENSG00000105397|ENST00000525621|TYK2;ENST00000494904.1_1_1:65325735-65330472:-|nuORF;ENSG00000162434|ENST00000342505|JAK1	ENSG00000105397|ENST00000525621|TYK2;ENSG00000162434|ENST00000342505|JAK1	ENSG00000105397|ENST00000525621|TYK2	MULTI-MSMS	A375_MHC_IP_R2	2	535.6870727539062	2	535.287474	1068.5604	-0.83496	-0.00044694	-0.04048	-2.1668E-05	-0.87544	-0.00046861	535.2873390601634	105.95	0.86635	106.71	106.27	107.14	0.75977					32	16	3	0	0	0	0.11715	1	40030	40030		47.594	14.809	1	5294400			50362	2599;6535	36645	36936	49183	49183					0.028857429602794582
SLVDIYSQL	9	Unmodified	_SLVDIYSQL_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	MULTI-SECPEP	A375_MHC_IP_R1	1	1036.9127197265625	1	1037.55135	1036.54408	-0.29647	-0.00030761	-0.050274	-5.2162E-05	-0.34675	-0.00035977	1037.5514336556262	124.12	0.40093	124.12	123.94	124.34	0					9	7	2	0	0	0	0.13208	1	46641	46641		66.457	5.0992	1	37187000			50363	7128	36646	36937	49184	49184					0.02726617003509091
SLVDIYSQL	9	Unmodified	_SLVDIYSQL_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	MULTI-SECPEP	A375_MHC_IP_R2	2	1037.065673828125	1	1037.55135	1036.54408	0.05342	5.5426E-05	0.062802	6.516E-05	0.11622	0.00012059	1038.5545083518214	123.43	0.35213	123.81	123.63	123.98	0.3766					9	6	2	0	0	0	0.025235	1	47432	47432		107.19	14.696	1	22084000			50364	7128	36646	36937	49185	49185					0.02726617003509091
SLVDLCEKI	9	Unmodified	_SLVDLCEKI_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MSMS	A375_MHC_IP_R2	2	510.2037658691406	2	510.275718	1018.53688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.41	1	114.12	113.62	114.62	0.70985								0	0	0	0.15486	1	42762	42762		11.64	0	1		+		50365	19783	36647	36938	49186	49186					0.028355611314282214
SLVDLIPVTL	10	Unmodified	_SLVDLIPVTL_					0	0	0			REV__nc|ENSG00000144554|Q9BXW9-3|FANCD2	REV__nc|ENSG00000144554|Q9BXW9-3|FANCD2	MULTI-SECPEP	A375_MHC_IP_R1	1	535.728271484375	2	535.328808	1068.64306	-0.5764	-0.00030856	0.15625	8.3647E-05	-0.42015	-0.00022492	535.3287938310721	62.583	0.51167	62.583	62.351	62.863	0					14	9	2	0	0	0	0.9269	1	22643	22643		1.4819	0	1	1971400	+		50366	19430	36648	36939	49187	49187					0.11148639968428142
SLVEALDVWA	10	Unmodified	_SLVEALDVWA_					0	0	0		PLXNC1|p.G1440Tfs*6|1|0.9|ENSG00000136040|chr12:94300986-94300987|-/AC|frameshift_variant;ENSG00000136040|ENST00000258526|PLXNC1;PLXNC1|p.V1203Afs*40|1|0.34|ENSG00000136040|chr12:94279482-94279482|T/-|frameshift_variant;PLXNC1|p.C601Sfs*2|1|0.97|ENSG00000136040|chr12:94226616-94226616|G/-|frameshift_variant;PLXNC1|p.R1127Sfs*36|1|0.28|ENSG00000136040|chr12:94260770-94260771|-/CA|frameshift_variant	PLXNC1|p.G1440Tfs*6|1|0.9|ENSG00000136040|chr12:94300986-94300987|-/AC|frameshift_variant	PLXNC1|p.G1440Tfs*6|1|0.9|ENSG00000136040|chr12:94300986-94300987|-/AC|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	551.7137451171875	2	551.792589	1101.57063	-0.73221	-0.00040403	-2.47	-0.0013629	-3.2022	-0.001767	551.7906051724553	90.43	0.4572	90.43	90.133	90.59	0					10	8	2	0	0	0	0.87163	1	33200	33200		5.7319	1.7875	1	848810			50367	4744	36649	36940	49188	49188					0.023903058948462785
SLVEGKRIHLL	11	Unmodified	_SLVEGKRIHLL_					0	0	0		nc|ENSG00000137203|P05549-2|TFAP2A	nc|ENSG00000137203|P05549-2|TFAP2A	nc|ENSG00000137203|P05549-2|TFAP2A	MULTI-SECPEP	A375_MHC_IP_R2	2	421.95068359375	3	422.262712	1263.76631	-0.13663	-5.7695E-05	-0.0038076	-1.6078E-06	-0.14044	-5.9303E-05	422.2625991326043	31.869	0.25166	32.606	32.453	32.704	0.73692					8	4	2	0	0	0	0.99916	1	11247	11247		2.4348	0	1	1030100			50368	14625	36650	36941	49189	49189					0.14497316139568284
SLVEIILHV	9	Unmodified	_SLVEIILHV_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13;ENST00000527047.5_1_11:237024-247462:+|nuORF;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000534590.5_1_11:244044-244236:+|nuORF	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-SECPEP	A375_MHC_IP_R1	1	511.16131591796875	2	511.815867	1021.61718	-0.29645	-0.00015173	1.0045	0.00051414	0.70808	0.00036241	511.8159865586812	128.18	0.25398	128.18	128.02	128.28	0					9	4	3	0	0	0	0.054184	1	49201	49201		81.864	37.457	1	4800400			50369	8680	36651	36942	49190	49190					0.10723790516817644
SLVENGSYI	9	Unmodified	_SLVENGSYI_					0	0	0		ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	MSMS	A375_MHC_IP_R1	1	491.181884765625	2	491.248015	980.481476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.983	1	68.983	68.483	69.483	0								0	0	0	0.1499	1	25025	25025		21.747	0.87544	1				50370	1739	36652	36943	49191	49191					-0.009545290646656213
SLVESILSAL	10	Unmodified	_SLVESILSAL_					0	0	0		MS4A6A|p.G120E|1|0.3|ENSG00000110077|chr11:60175592-60175592|C/T|missense_variant	MS4A6A|p.G120E|1|0.3|ENSG00000110077|chr11:60175592-60175592|C/T|missense_variant	MS4A6A|p.G120E|1|0.3|ENSG00000110077|chr11:60175592-60175592|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	516.7025756835938	2	516.30279	1030.59103	-0.8928	-0.00046095	1.118	0.00057724	0.22523	0.00011629	516.3032372505942	143.76	0.30379	143.76	143.63	143.94	0					9	5	3	0	0	0	0.71245	1	55165	55165		6.7232	2.3939	1	2873300			50371	14408	36653	36944	49192	49192					0.07695476554658853
SLVESILSAL	10	Unmodified	_SLVESILSAL_					0	0	0		MS4A6A|p.G120E|1|0.3|ENSG00000110077|chr11:60175592-60175592|C/T|missense_variant	MS4A6A|p.G120E|1|0.3|ENSG00000110077|chr11:60175592-60175592|C/T|missense_variant	MS4A6A|p.G120E|1|0.3|ENSG00000110077|chr11:60175592-60175592|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	516.30279	1030.59103	-0.57548	-0.00029712	1.8043	0.00093154	1.2288	0.00063442	516.3036841883151	143.79	0.20206	143.82	143.69	143.89	0.024414	0.028437	5.1109E-05	NaN	6.7232	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2300800			50372	14408	36653	36944							0.07695476554658853
SLVFHAIDY	9	Unmodified	_SLVFHAIDY_					0	0	0		ENSG00000148358|ENST00000347136|GPR107;ENST00000493417.5_1_9:132839594-132891041:+|nuORF;nc|ENSG00000148358|Q5VW38|GPR107	ENSG00000148358|ENST00000347136|GPR107	ENSG00000148358|ENST00000347136|GPR107	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1954956054688	2	532.7742	1063.53385	-0.78218	-0.00041672	-0.82545	-0.00043978	-1.6076	-0.0008565	532.773874921556	33.064	1.0126	33.064	32.535	33.547	0					33	19	2	0	0	0	0.71541	1	10523	10523		3.9444	2.2918	1	4055300			50373	5737	36654	36945	49193	49193					0.004620540689529662
SLVFYALGF	9	Unmodified	_SLVFYALGF_					0	0	0			REV__nc|ENSG00000112167|Q9NPB0-2|SAYSD1	REV__nc|ENSG00000112167|Q9NPB0-2|SAYSD1	MSMS	A375_MHC_IP_R1	1	508.7125549316406	2	508.776211	1015.53787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.9	1	111.9	111.4	112.4	0								0	0	0	0.13805	1	41020	41020		30.225	1.738	1		+		50374	17713	36655	36946	49194	49194					0.030721435626674065
SLVGRLRFWPK	11	Unmodified	_SLVGRLRFWPK_					0	0	0			REV__nc|ENSG00000003756|P52756-3|RBM5	REV__nc|ENSG00000003756|P52756-3|RBM5	MSMS	A375_MHC_IP_R2	2	679.810546875	2	679.906414	1357.79827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.69	1	124.02	123.52	124.52	0.32969								0	0	0	0.16258	1	47624	47624		5.2969	0	1		+		50375	27087	36656	36947	49195	49195					0.13368728613340863
SLVGTLYWM	9	Unmodified	_SLVGTLYWM_					0	0	0		PAK4|p.P479L|1|0.19|ENSG00000130669|chr19:39176666-39176666|C/T|missense_variant	PAK4|p.P479L|1|0.19|ENSG00000130669|chr19:39176666-39176666|C/T|missense_variant	PAK4|p.P479L|1|0.19|ENSG00000130669|chr19:39176666-39176666|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	357.4490051269531	3	357.184411	1068.5314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.256	1	62.998	62.498	63.498	0.74263								0	0	0	0.15486	1	23597	23597		2.2828	0	1				50376	15106	36657	36948	49196	49196					-0.00012117660367039207
SLVHKKKKF	9	Unmodified	_SLVHKKKKF_					0	0	0			REV__ENSG00000256870|ENST00000536262|SLC5A8	REV__ENSG00000256870|ENST00000536262|SLC5A8	MULTI-MSMS	A375_MHC_IP_R2	2	372.601318359375	3	372.241359	1113.70225	0.63167	0.00023513	-0.31537	-0.00011739	0.3163	0.00011774	372.2412279752592	47.236	1.1674	47.997	47.715	48.883	0.76128					67	22	5	0	0	0	0.7235	1	18055	18055		4.897	0.36815	1	172730000	+		50377	22886	36658	36949	49197	49197					0.14994580773281996
SLVHNGVSYY	10	Unmodified	_SLVHNGVSYY_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	A375_MHC_IP_R1	1	569.5087280273438	2	569.780013	1137.54547	-0.31045	-0.00017689	-0.29445	-0.00016777	-0.60489	-0.00034466	569.7797347954338	75.517	1.1102	75.517	74.805	75.915	0					28	21	2	0	0	0	0.70179	1	27492	27492		11.495	0	1	1315000			50378	9113	36659	36950	49198	49198					-0.017797489077111095
SLVHNGVSYY	10	Unmodified	_SLVHNGVSYY_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	569.780013	1137.54547	-0.31045	-0.00017689	-0.29445	-0.00016777	-0.60489	-0.00034466	569.7797347954338	75.517	1.1102	75.517	74.805	75.915	0	0.1617	0.00016234	NaN	11.495	28	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1315000			50379	9113	36659	36950							-0.017797489077111095
SLVHNGVSYY	10	Unmodified	_SLVHNGVSYY_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MATCH	A375_MHC_IP_R2	2		2	569.780013	1137.54547	-0.36182	-0.00020616	-0.65777	-0.00037479	-1.0196	-0.00058094	569.7792185584455	74.456	1.3193	75.194	74.553	75.872	0.73752	-0.1617	-0.0002517	NaN	11.495	40	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1060300			50380	9113	36659	36950							-0.017797489077111095
SLVHYAGTVDY	11	Unmodified	_SLVHYAGTVDY_					0	0	0		ENSG00000006788|ENST00000252172|MYH13;ENSG00000264424|ENST00000255381|MYH4	ENSG00000006788|ENST00000252172|MYH13;ENSG00000264424|ENST00000255381|MYH4	ENSG00000264424|ENST00000255381|MYH4	MULTI-SECPEP	A375_MHC_IP_R2	2	613.1980590820312	2	612.798403	1223.58225	-0.469	-0.0002874	-0.096067	-5.887E-05	-0.56506	-0.00034627	612.7983105728454	88.837	1.672	89.569	88.976	90.648	0.7318					79	32	3	0	0	0	0.95991	1	33906	33906		13.042	0.80181	1	7003600			50381	9953;932	36660	36951	49199	49199					-0.020594970817910507
SLVKDVIGA	9	Unmodified	_SLVKDVIGA_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	A375_MHC_IP_R1	1	451.68450927734375	2	451.271293	900.528032	-0.1614	-7.2834E-05	0.51464	0.00023224	0.35325	0.00015941	451.2714661648879	61.661	0.51088	61.661	61.432	61.943	0					12	9	2	0	0	0	0.57432	1	22241	22241		16.149	2.2431	1	2802800			50382	7536	36661	36952	49200	49200					0.07378955557271638
SLVKEFQKL	9	Unmodified	_SLVKEFQKL_					0	0	0		ATP13A4|p.E834K|1|0.38|ENSG00000127249|chr3:193440577-193440577|C/T|missense_variant	ATP13A4|p.E834K|1|0.38|ENSG00000127249|chr3:193440577-193440577|C/T|missense_variant	ATP13A4|p.E834K|1|0.38|ENSG00000127249|chr3:193440577-193440577|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	364.9255065917969	3	364.553492	1090.63865	-0.21133	-7.7041E-05	0.32573	0.00011875	0.1144	4.1706E-05	364.8878466681607	37.948	0.56474	38.723	38.483	39.047	0.77451					20	10	3	0	0	0	0.775	1	13876	13876		4.1895	1.3462	1	2123600			50383	204	36662	36953	49201	49201					0.09695175545516577
SLVKEFQKL	9	Unmodified	_SLVKEFQKL_					0	0	0		ATP13A4|p.E834K|1|0.38|ENSG00000127249|chr3:193440577-193440577|C/T|missense_variant	ATP13A4|p.E834K|1|0.38|ENSG00000127249|chr3:193440577-193440577|C/T|missense_variant	ATP13A4|p.E834K|1|0.38|ENSG00000127249|chr3:193440577-193440577|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	364.553492	1090.63865	0.57049	0.00020797	0.37371	0.00013624	0.9442	0.00034421	364.5534462445228	38.894	0.55903	38.894	38.628	39.187	0	0.085666	1.7018E-05	NaN	4.1895	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2452500			50384	204	36662	36953							0.09695175545516577
SLVKKVAEKV	10	Unmodified	_SLVKKVAEKV_					0	0	0			REV__ENSG00000179055|ENST00000641530|OR13D1	REV__ENSG00000179055|ENST00000641530|OR13D1	MSMS	A375_MHC_IP_R2	2	367.6239318847656	3	367.572775	1099.69649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.71	1	25.354	24.854	25.854	0.64368								0	0	0	0.15382	1	8162	8162		8.4443	0.49891	1		+		50385	21539	36663	36954	49202	49202					0.1506343747093979
SLVKRQWRARF	11	Unmodified	_SLVKRQWRARF_					0	0	0		ENST00000484663.5_1_16:30133562-30134123:-|nuORF	ENST00000484663.5_1_16:30133562-30134123:-|nuORF	ENST00000484663.5_1_16:30133562-30134123:-|nuORF	MSMS	A375_MHC_IP_R2	2	724.0422973632812	2	723.925669	1445.83679	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.02	1	123.4	122.9	123.9	0.3766								0	0	0	0.16249	1	47220	47220		5.7319	0.43497	1				50386	12564	36664	36955	49203	49203					0.13170034247877993
SLVKTRKRA	9	Unmodified	_SLVKTRKRA_					0	0	0			REV__nc|ENSG00000130653|Q6ZV29-3|PNPLA7;REV__nc|ENSG00000130653|Q6ZV29-2|PNPLA7	REV__nc|ENSG00000130653|Q6ZV29-3|PNPLA7	MSMS	A375_MHC_IP_R2	2	529.739501953125	2	529.843282	1057.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.86	1	142.9	142.4	143.4	0.030731								0	0	0	0.15486	1	55847	55847		1.8442	0	1		+		50387	18551;27221	36665	36956	49204	49204					0.14548222108078335
SLVKVLKLRH	10	Unmodified	_SLVKVLKLRH_					0	0	0			REV__nc|ENSG00000131969|Q7Z5M8-5|ABHD12B	REV__nc|ENSG00000131969|Q7Z5M8-5|ABHD12B	MULTI-SECPEP	A375_MHC_IP_R2	2	596.232666015625	2	596.898057	1191.78156	-0.44181	-0.00026372	-3.6194	-0.0021604	-4.0612	-0.0024241	596.8971129061094	101.15	0.20541	101.92	101.75	101.96	0.76428					5	3	2	0	0	0	0.94862	1	38329	38329		1.6526	0	1	609090	+		50388	18631	36666	36957	49205	49205					0.19334227727381403
SLVLFSVGLR	10	Unmodified	_SLVLFSVGLR_					0	0	0			REV__UGT8|p.P213S|1|0.4|ENSG00000174607|chr4:114623517-114623517|C/T|missense_variant	REV__UGT8|p.P213S|1|0.4|ENSG00000174607|chr4:114623517-114623517|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	364.6327209472656	3	364.225486	1089.65463	0.26185	9.5372E-05	2.6169	0.00095313	2.8787	0.0010485	364.22614887980205	56.95	1.7281	56.95	56.347	58.075	0					36	33	2	0	0	0	0.8528	1	20615	20615		10.315	6.1257	1	1217900	+		50389	28951	36667	36958	49206	49206					0.11338881782398857
SLVLLLERYL	10	Unmodified	_SLVLLLERYL_					0	0	0			REV__ENST00000315266.9_1_14:67648077-67648284:+|nuORF	REV__ENST00000315266.9_1_14:67648077-67648284:+|nuORF	MSMS	A375_MHC_IP_R2	2	609.87890625	2	609.876456	1217.73836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.05	1	122.5	122	123	0.44488								0	0	0	0.15549	1	46737	46737		2.9952	1.151	1		+		50390	23530	36668	36959	49207	49207					0.13819993159472688
SLVPCPLLTF	10	Unmodified	_SLVPCPLLTF_					0	0	0			REV__ENST00000512792.2_1_12:112191278-112193633:+|nuORF	REV__ENST00000512792.2_1_12:112191278-112193633:+|nuORF	MSMS	A375_MHC_IP_R2	2	363.92919921875	3	363.871944	1088.594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.985	1	31.704	31.204	32.204	0.71857								0	0	0	0.14925	1	10930	10930		12.175	0	1		+		50391	25630	36669	36960	49208	49208					0.053250284078103505
SLVPHNYGL	9	Unmodified	_SLVPHNYGL_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-SECPEP	A375_MHC_IP_R1	1	500.666259765625	2	500.266542	998.51853	-0.38011	-0.00019015	0.22715	0.00011364	-0.15295	-7.6517E-05	500.26660398784065	64.014	0.7094	64.014	63.684	64.393	0					43	13	5	0	0	0	0.04038	1	23098	23098		85.642	49.514	1	25056000			50392	4826	36670	36961	49209	49209					0.01921187271761937
SLVPHNYGL	9	Unmodified	_SLVPHNYGL_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-MSMS	A375_MHC_IP_R2	2	500.66632080078125	2	500.266542	998.51853	-0.5282	-0.00026424	0.064316	3.2175E-05	-0.46388	-0.00023206	500.2665569855407	63.079	0.86316	63.822	63.534	64.397	0.74263					40	16	4	0	0	0	0.018261	2	23894	23894;23972		85.642	29.464	1	23334000			50393	4826	36670	36961	49210;49211	49210					0.01921187271761937
SLVPKWYAAF	10	Unmodified	_SLVPKWYAAF_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-SECPEP	A375_MHC_IP_R2	2	592.0636596679688	2	591.321317	1180.62808	-0.43785	-0.00025891	1.8565	0.0010978	1.4186	0.00083887	591.3212958289681	86.943	0.50739	87.676	87.255	87.762	0.733					12	9	2	0	0	0	0.91909	1	33070	33070		2.9952	0.26005	1	1538200	+		50394	22351	36671	36962	49212	49212					0.044991928910803836
SLVPLYLHL	9	Unmodified	_SLVPLYLHL_					0	0	0		nc|ENSG00000101928|Q9UJG1-3|MOSPD1;ENSG00000101928|ENST00000370783|MOSPD1	nc|ENSG00000101928|Q9UJG1-3|MOSPD1	nc|ENSG00000101928|Q9UJG1-3|MOSPD1	MULTI-SECPEP	A375_MHC_IP_R1	1	351.93414306640625	3	352.214699	1053.62227	-0.3065	-0.00010795	-0.01779	-6.266E-06	-0.32429	-0.00011422	352.2147883508373	39.567	0.2534	39.567	39.491	39.744	0					6	4	2	0	0	0	0.65246	1	13507	13507		10.8	5.9025	1	1109200			50395	14516	36672	36963	49213	49213					0.09760094379407747
SLVPMEIKPG	10	Unmodified	_SLVPMEIKPG_					0	0	0		nc|ENSG00000104299|Q9NV88-3|INTS9;ENSG00000104299|ENST00000521022|INTS9;nc|ENSG00000104299|Q9NV88-2|INTS9;ENST00000523303.5_1_8:28625665-28628621:-|nuORF;ENST00000520316.5_1_8:28627126-28633440:-|nuORF	nc|ENSG00000104299|Q9NV88-3|INTS9	nc|ENSG00000104299|Q9NV88-3|INTS9	MULTI-SECPEP	A375_MHC_IP_R1	1	358.2766418457031	3	357.535332	1069.58417	-0.25912	-9.2645E-05	-3.2304	-0.001155	-3.4895	-0.0012476	357.8687567175491	26.066	0.35487	26.066	25.917	26.271	0					9	6	2	0	0	0	0.85226	1	7804	7804		12.873	0	1	1121700			50396	2494	36673	36964	49214	49214					0.05215840402433969
SLVPRRET	8	Unmodified	_SLVPRRET_					0	0	0		BRSK1|p.R273Kfs*70|1|0.38|ENSG00000160469|chr19:55301644-55301645|-/A|frameshift_variant	BRSK1|p.R273Kfs*70|1|0.38|ENSG00000160469|chr19:55301644-55301645|-/A|frameshift_variant	BRSK1|p.R273Kfs*70|1|0.38|ENSG00000160469|chr19:55301644-55301645|-/A|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	479.6771545410156	2	479.277441	956.540328	-0.44288	-0.00021226	0.18313	8.7771E-05	-0.25974	-0.00012449	479.27740587608423	109.27	5.8121	110.01	107.38	113.19	0.74683					289	113	4	0	0	0	0.74945	1	41639	41639		20.454	11.86	1	18458000			50397	254	36674	36965	49215	49215					0.06031992020314192
SLVQGELVTA	10	Unmodified	_SLVQGELVTA_					0	0	0		nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1	nc|ENSG00000087274|P35611-2|ADD1	nc|ENSG00000087274|P35611-2|ADD1	MULTI-MSMS	A375_MHC_IP_R1	1	1016.346923828125	1	1016.56225	1015.55498	0.15643	0.00015902	-0.2861	-0.00029084	-0.12967	-0.00013182	1016.5619227498232	77.311	0.45473	77.311	77.032	77.486	0					13	8	2	0	0	0	0.21617	1	28233	28233		47.594	1.8948	1	2198800			50398	14492	36675	36966	49216	49216					0.047820193778079556
SLVQGELVTA	10	Unmodified	_SLVQGELVTA_					0	0	0		nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1	nc|ENSG00000087274|P35611-2|ADD1	nc|ENSG00000087274|P35611-2|ADD1	MULTI-SECPEP	A375_MHC_IP_R1	1	509.1846008300781	2	508.784764	1015.55498	-0.42525	-0.00021636	0.40322	0.00020515	-0.022025	-1.1206E-05	508.7848937267235	77.308	1.0673	77.308	76.981	78.048	0					35	20	2	0	0	0	0.17241	1	28184	28184		62.573	2.4988	1	2913300			50399	14492	36675	36966	49217	49217					0.047820193778079556
SLVQGELVTA	10	Unmodified	_SLVQGELVTA_					0	0	0		nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1	nc|ENSG00000087274|P35611-2|ADD1	nc|ENSG00000087274|P35611-2|ADD1	MULTI-SECPEP	A375_MHC_IP_R2	2	509.1841735839844	2	508.784764	1015.55498	-0.73726	-0.00037511	0.2305	0.00011727	-0.50676	-0.00025783	508.78478213511545	76.496	0.66129	77.236	76.994	77.655	0.74052					21	12	2	0	0	0	0.42334	1	29060	29060		51.63	0	1	3613300			50400	14492	36675	36966	49218	49218					0.047820193778079556
SLVQGELVTA	10	Unmodified	_SLVQGELVTA_					0	0	0		nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1	nc|ENSG00000087274|P35611-2|ADD1	nc|ENSG00000087274|P35611-2|ADD1	MULTI-SECPEP	A375_MHC_IP_R2	2	1016.3461303710938	1	1016.56225	1015.55498	0.032669	3.321E-05	0.020818	2.1162E-05	0.053487	5.4372E-05	1016.5623697677667	76.534	0.35564	77.275	77.095	77.451	0.74052					10	6	2	0	0	0	0.62001	1	29092	29092		33.445	2.1766	1	2368500			50401	14492	36675	36966	49219	49219					0.047820193778079556
SLVQQLRLY	9	Unmodified	_SLVQQLRLY_					0	0	0			REV__ENSG00000214897|ENST00000445091|PNMA6E	REV__ENSG00000214897|ENST00000445091|PNMA6E	MULTI-SECPEP	A375_MHC_IP_R1	1	559.70361328125	2	560.329673	1118.64479	-0.34558	-0.00019364	-0.57834	-0.00032406	-0.92392	-0.0005177	560.3293347671557	72.522	0.76093	72.522	72.119	72.88	0					31	14	3	0	0	0	0.69504	1	26285	26285		7.9102	3.1541	1	5339400	+		50402	22664	36676	36967	49220	49220					0.09021693777026485
SLVRDFPV	8	Unmodified	_SLVRDFPV_					0	0	0		ENST00000594572.1_1_1:203045188-203045954:+|nuORF;ENST00000367240.6_1_1:203045582-203045954:+|nuORF	ENST00000594572.1_1_1:203045188-203045954:+|nuORF	ENST00000594572.1_1_1:203045188-203045954:+|nuORF	MSMS	A375_MHC_IP_R1	1	466.6895446777344	2	466.763635	931.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.001	1	56.001	55.501	56.501	0								0	0	0	0.16876	1	20048	20048		18.135	3.2967	1				50403	11084	36677	36968	49221	49221					0.04422088760088627
SLVRPISW	8	Unmodified	_SLVRPISW_					0	0	0			REV__ENST00000500625.7_3_12:133758097-133764492:+|nuORF	REV__ENST00000500625.7_3_12:133758097-133764492:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	478.653076171875	2	479.279452	956.544351	-0.77799	-0.00037287	1.3255	0.0006353	0.54755	0.00026243	479.2799404205113	38.974	0.25569	39.749	39.607	39.863	0.77451					6	4	2	0	0	0	0.97144	1	14373	14373		5.2307	0	1	1052600	+		50404	25489	36678	36969	49222	49222					0.0643408151404401
SLVRRLRRQP	10	Unmodified	_SLVRRLRRQP_					0	0	0			REV__ENST00000520367.5_2_17:78402403-78410038:+|nuORF	REV__ENST00000520367.5_2_17:78402403-78410038:+|nuORF	MSMS	A375_MHC_IP_R1	1	640.9052124023438	2	640.904737	1279.79492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.34	1	122.34	121.84	122.84	0								0	0	0	0.15588	1	45516	45516		3.5965	0	1		+		50405	25698	36679	36970	49223	49223					0.16621478559363823
SLVRVVQII	9	Unmodified	_SLVRVVQII_					0	0	0		PNPLA6-ATP13A1|1|fusion;PNPLA6-ATP13A1|3|fusion;PNPLA6-ATP13A1|2|fusion;nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	PNPLA6-ATP13A1|1|fusion	PNPLA6-ATP13A1|1|fusion	MSMS	A375_MHC_IP_R1	1	513.8538208007812	2	513.837134	1025.65972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.936	1	49.936	49.436	50.436	0								0	0	0	0.15283	1	17673	17673		16.942	1.0951	1				50406	1117	36680	36971	49224	49224					0.14791185645049154
SLVSATSVGDS	11	Unmodified	_SLVSATSVGDS_					0	0	0		nc|ENSG00000089682|Q96IZ5-2|RBM41;nc|ENSG00000089682|Q96IZ5|RBM41;ENSG00000089682|ENST00000685964|RBM41	nc|ENSG00000089682|Q96IZ5-2|RBM41	nc|ENSG00000089682|Q96IZ5-2|RBM41	MULTI-SECPEP	A375_MHC_IP_R2	2	511.6815185546875	2	511.753661	1021.49277	-1.0536	-0.00053919	-3.6293	-0.0018573	-4.6829	-0.0023965	512.254241287002	61.652	0.70589	62.397	62.07	62.776	0.74503					20	13	2	0	0	0	0.90584	1	23252	23252		22.736	5.794	1	1552700			50407	1931	36681	36972	49225	49225					-0.017117517611836774
SLVSNRYY	8	Unmodified	_SLVSNRYY_					0	0	0		ENST00000497850.5_1_X:102331220-102334875:-|nuORF	ENST00000497850.5_1_X:102331220-102334875:-|nuORF	ENST00000497850.5_1_X:102331220-102334875:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.17840576171875	2	501.256174	1000.49779	-0.28449	-0.0001426	-0.821	-0.00041153	-1.1055	-0.00055413	501.2559029292235	79.308	0.51302	79.308	79.061	79.574	0					15	9	2	0	0	0	0.7754	1	28899	28899		11.64	3.047	1	1312200			50408	12749	36682	36973	49226	49226					-0.002434031079133092
SLVSSLYKV	9	Unmodified	_SLVSSLYKV_					0	0	0		nc|ENSG00000122591|Q9BYI3-3|HYCC1;ENSG00000122591|ENST00000432176|HYCC1;ENST00000467005.5_1_7:23023511-23030730:-|nuORF	nc|ENSG00000122591|Q9BYI3-3|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	MULTI-MSMS	A375_MHC_IP_R2	2	498.6925964355469	2	498.292225	994.569897	-0.52134	-0.00025978	0.2147	0.00010699	-0.30663	-0.00015279	498.29225004736475	76.884	0.40346	77.627	77.404	77.807	0.74293					16	7	3	0	0	0	0.06083	1	29202	29202		60.074	22.1	1	1361200			50409	14572	36683	36974	49227	49227					0.07239511245802532
SLVSSLYKV	9	Unmodified	_SLVSSLYKV_					0	0	0		nc|ENSG00000122591|Q9BYI3-3|HYCC1;ENSG00000122591|ENST00000432176|HYCC1;ENST00000467005.5_1_7:23023511-23030730:-|nuORF	nc|ENSG00000122591|Q9BYI3-3|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	498.292225	994.569897	-0.32193	-0.00016042	0.26831	0.0001337	-0.053624	-2.672E-05	498.29195085278656	77.817	0.51134	77.817	77.588	78.099	0	0.094636	2.7159E-05	NaN	60.074	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1763700			50410	14572	36683	36974							0.07239511245802532
SLVSTHDLHF	10	Unmodified	_SLVSTHDLHF_					0	0	0			REV__ENSG00000160007|ENST00000672722|ARHGAP35	REV__ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-SECPEP	A375_MHC_IP_R2	2	578.6934204101562	2	578.293288	1154.57202	-0.21991	-0.00012717	0.38773	0.00022422	0.16781	9.7045E-05	578.2933146265241	77.771	0.76793	78.514	77.958	78.726	0.74293					32	14	3	0	0	0	0.87163	1	29491	29491		13.906	2.4113	1	6862800	+		50411	20141	36684	36975	49228	49228					0.0009193998362206912
SLVTDYNSC	9	Unmodified	_SLVTDYNSC_					0	0	0		ENSG00000236320|ENST00000674182|SLFN14	ENSG00000236320|ENST00000674182|SLFN14	ENSG00000236320|ENST00000674182|SLFN14	MULTI-MSMS	A375_MHC_IP_R1	1	501.2105712890625	2	501.215857	1000.41716	-0.46158	-0.00023135	1.1423	0.00057255	0.68074	0.0003412	501.215912035845	46.506	0.50497	46.506	46.345	46.85	0					10	9	2	0	0	0	0.63811	2	16377	16324;16377		12.532	0	1	724960			50412	9750	36685	36976	49229;49230	49230					-0.08303052213125284
SLVTPMLGRNL	11	Unmodified	_SLVTPMLGRNL_					0	0	0		ENST00000468159.1_1_3:65387260-65387305:-|nuORF	ENST00000468159.1_1_3:65387260-65387305:-|nuORF	ENST00000468159.1_1_3:65387260-65387305:-|nuORF	MSMS	A375_MHC_IP_R2	2	600.7421264648438	2	600.842091	1199.66963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.51	1	102.28	101.78	102.78	0.76428								0	0	0	0.14647	1	38478	38478		22.736	8.8302	1				50413	12298	36686	36977	49231	49231					0.0777800558812487
SLVVMAYAKF	10	Unmodified	_SLVVMAYAKF_					0	0	0		nc|ENSG00000177034|Q5HYI7-2|MTX3;nc|ENSG00000177034|Q5HYI7-4|MTX3;ENSG00000177034|ENST00000512528|MTX3	nc|ENSG00000177034|Q5HYI7-2|MTX3	nc|ENSG00000177034|Q5HYI7-2|MTX3	MULTI-SECPEP	A375_MHC_IP_R2	2	565.1725463867188	2	564.809728	1127.6049	-0.329	-0.00018582	1.1511	0.00065015	0.8221	0.00046433	565.3130273115197	93.592	0.20113	94.337	94.211	94.412	0.74474					5	3	2	0	0	0	0.88918	1	35575	35575		18.146	4.2403	1	895700			50414	8056	36687	36978	49232	49232					0.046204307820971735
SLWAGLSLGPG	11	Unmodified	_SLWAGLSLGPG_					0	0	0			REV__ENST00000376227.3_1_X:49093621-49098531:+|nuORF	REV__ENST00000376227.3_1_X:49093621-49098531:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	529.1353149414062	2	529.287474	1056.5604	-0.48241	-0.00025533	-0.38287	-0.00020265	-0.86529	-0.00045799	529.2872239078439	64.273	0.35575	65.013	64.699	65.054	0.74022					11	6	2	0	0	0	0.9754	1	24258	24258		8.1555	0	1	1000400	+		50415	24138	36688	36979	49233	49233					0.03437742960295509
SLWAIFADAI	10	Unmodified	_SLWAIFADAI_					0	0	0		ENSG00000172640|ENST00000310248|OR10AD1	ENSG00000172640|ENST00000310248|OR10AD1	ENSG00000172640|ENST00000310248|OR10AD1	MULTI-SECPEP	A375_MHC_IP_R2	2	553.17822265625	2	553.797675	1105.5808	-0.83735	-0.00046372	-0.27419	-0.00015185	-1.1115	-0.00061557	553.797952751852	66.956	0.4052	67.692	67.495	67.9	0.73631					14	7	3	0	0	0	0.88361	1	25432	25432		13.042	0	1	997990			50416	7727	36689	36980	49234	49234					0.03222913620084
SLWCYDVI	8	Unmodified	_SLWCYDVI_					0	0	0			REV__ENSG00000205808|ENST00000381883|PLPP6	REV__ENSG00000205808|ENST00000381883|PLPP6	MULTI-MSMS	A375_MHC_IP_R1	1	500.6380920410156	2	499.736228	997.457904	-0.21355	-0.00010672	1.8347	0.00091686	1.6211	0.00081015	500.2382518478905	117.69	0.65904	117.69	117.31	117.97	0					30	12	4	0	0	0	0.75322	1	43297	43297		19.439	0	1	8335800	+		50417	22585	36690	36981	49235	49235					-0.040926661028379385
SLWDLFLLSP	10	Unmodified	_SLWDLFLLSP_					0	0	0			REV__ENST00000263980.7_1_1:27481262-27481385:-|nuORF	REV__ENST00000263980.7_1_1:27481262-27481385:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	595.2216796875	2	595.826432	1189.63831	-1.0214	-0.00060859	-1.3346	-0.00079517	-2.356	-0.0014038	595.8245260480128	53.751	0.20382	54.502	54.353	54.557	0.75105					5	3	2	0	0	0	0.91556	1	20298	20298		1.3295	0	1	866620	+		50418	23230	36691	36982	49236	49236					0.05107755825656568
SLWEWEEQSFY	11	Unmodified	_SLWEWEEQSFY_					0	0	0			REV__ZNF667|p.N203Sfs*6|1|0.01|ENSG00000198046|chr19:56442389-56442390|-/AAAAAACAAAGAA|frameshift_variant	REV__ZNF667|p.N203Sfs*6|1|0.01|ENSG00000198046|chr19:56442389-56442390|-/AAAAAACAAAGAA|frameshift_variant	MSMS	A375_MHC_IP_R2	2	752.271484375	2	752.324982	1502.63541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.83	1	125.16	124.66	125.66	0.32969								0	0	0	0.16334	1	48419	48419		1.3295	0	1		+		50419	22340	36692	36983	49237	49237					-0.0958016408981166
SLWFIVPPR	9	Unmodified	_SLWFIVPPR_					0	0	0			REV__ENSG00000183914|ENST00000572933|DNAH2	REV__ENSG00000183914|ENST00000572933|DNAH2	MULTI-MSMS	A375_MHC_IP_R1	1	372.61859130859375	3	372.218443	1113.6335	0.22023	8.1972E-05	-0.029225	-1.0878E-05	0.191	7.1094E-05	372.2183924847299	80.314	0.66093	80.314	79.931	80.592	0					21	12	3	0	0	0	0.75032	1	29313	29313		2.4985	0	1	3378400	+		50420	21788	36693	36984	49238	49238					0.08122916473553232
SLWFIVPPR	9	Unmodified	_SLWFIVPPR_					0	0	0			REV__ENSG00000183914|ENST00000572933|DNAH2	REV__ENSG00000183914|ENST00000572933|DNAH2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	372.218443	1113.6335	0.22023	8.1972E-05	-0.029225	-1.0878E-05	0.191	7.1094E-05	372.2183924847299	80.314	0.66093	80.314	79.931	80.592	0	0	0	NaN	2.4985	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3378400	+		50421	21788	36693	36984							0.08122916473553232
SLWFKPEEL	9	Unmodified	_SLWFKPEEL_					0	0	0		nc|ENSG00000243678|P22392-2|NME2;ENST00000570801.1_1_17:49245578-49248962:+|nuORF;ENSG00000243678|ENST00000512737|NME2	nc|ENSG00000243678|P22392-2|NME2	nc|ENSG00000243678|P22392-2|NME2	MULTI-SECPEP	A375_MHC_IP_R1	1	575.2027587890625	2	574.802957	1147.59136	-0.1561	-8.9726E-05	-0.76355	-0.00043889	-0.91965	-0.00052862	574.8026747038555	100.94	0.96083	100.94	100.74	101.7	0					34	18	3	0	0	0	0.30925	1	37116	37116		49.554	20.473	1	1796600			50422	14916	36694	36985	49239	49239					0.02346896274525534
SLWFKPEEL	9	Unmodified	_SLWFKPEEL_					0	0	0		nc|ENSG00000243678|P22392-2|NME2;ENST00000570801.1_1_17:49245578-49248962:+|nuORF;ENSG00000243678|ENST00000512737|NME2	nc|ENSG00000243678|P22392-2|NME2	nc|ENSG00000243678|P22392-2|NME2	MULTI-SECPEP	A375_MHC_IP_R2	2	575.2025756835938	2	574.802957	1147.59136	0.018497	1.0632E-05	-0.8458	-0.00048617	-0.8273	-0.00047553	574.8025086838564	100.09	0.66103	100.86	100.47	101.13	0.76278					25	12	3	0	0	0	0.14606	1	37961	37961		55.503	37.356	1	2511200			50423	14916	36694	36985	49240	49240					0.02346896274525534
SLWFRKRQ	8	Unmodified	_SLWFRKRQ_					0	0	0		ENST00000609285.5_1_20:1306388-1353809:+|nuORF	ENST00000609285.5_1_20:1306388-1353809:+|nuORF	ENST00000609285.5_1_20:1306388-1353809:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	374.2768859863281	3	374.217325	1119.63015	0.081631	3.0548E-05	-1.766	-0.00066089	-1.6844	-0.00063034	374.21676865443214	36.525	0.7617	36.525	36.084	36.845	0					23	14	3	0	0	0	0.7769	1	12303	12303		6.2058	1.1583	1	1514600			50424	13933	36695	36986	49241	49241					0.07511666419554786
SLWGGDVVL	9	Unmodified	_SLWGGDVVL_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;VPS13B|p.L1546*|1|0.35|ENSG00000132549|chr8:99511439-99511439|T/-|frameshift_variant;VPS13B|p.S335Hfs*23|1|0.17|ENSG00000132549|chr8:99121241-99121241|T/-|frameshift_variant;nc|ENSG00000132549|Q7Z7G8-5|VPS13B;nc|ENSG00000132549|Q7Z7G8-4|VPS13B;VPS13B|p.A1194Ifs*14|1|0.16|ENSG00000132549|chr8:99467545-99467557|CTTGCTACGGGAC/-|frameshift_variant	ENSG00000132549|ENST00000357162|VPS13B;VPS13B|p.A1194Ifs*14|1|0.16|ENSG00000132549|chr8:99467545-99467557|CTTGCTACGGGAC/-|frameshift_variant	ENSG00000132549|ENST00000357162|VPS13B	MULTI-MSMS	A375_MHC_IP_R1	1	946.4728393554688	1	945.504009	944.496732	0.44138	0.00041732	0.22599	0.00021367	0.66737	0.000631	945.5037307986431	126.75	0.55515	126.75	126.51	127.06	0					16	10	3	0	0	0	0.4867	1	48507	48507		20.454	3.5113	1	14791000			50425	4421;30147	36696	36987	49242	49242					0.022263825232016643
SLWGGDVVL	9	Unmodified	_SLWGGDVVL_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;VPS13B|p.L1546*|1|0.35|ENSG00000132549|chr8:99511439-99511439|T/-|frameshift_variant;VPS13B|p.S335Hfs*23|1|0.17|ENSG00000132549|chr8:99121241-99121241|T/-|frameshift_variant;nc|ENSG00000132549|Q7Z7G8-5|VPS13B;nc|ENSG00000132549|Q7Z7G8-4|VPS13B;VPS13B|p.A1194Ifs*14|1|0.16|ENSG00000132549|chr8:99467545-99467557|CTTGCTACGGGAC/-|frameshift_variant	ENSG00000132549|ENST00000357162|VPS13B;VPS13B|p.A1194Ifs*14|1|0.16|ENSG00000132549|chr8:99467545-99467557|CTTGCTACGGGAC/-|frameshift_variant	ENSG00000132549|ENST00000357162|VPS13B	MULTI-MATCH	A375_MHC_IP_R2	2		1	945.504009	944.496732	-0.14348	-0.00013566	1.0955	0.0010358	0.95206	0.00090017	945.50519004468	126.36	0.30215	126.66	126.48	126.78	0.2951	-0.048532	0.00057926	NaN	20.454	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22525000			50426	4421;30147	36696	36987							0.022263825232016643
SLWGLFHNV	9	Unmodified	_SLWGLFHNV_					0	0	0			REV__ENST00000497660.5_1_1:8390216-8404070:+|nuORF	REV__ENST00000497660.5_1_1:8390216-8404070:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	358.59014892578125	3	358.190665	1071.55016	-0.54845	-0.00019645	1.6595	0.00059443	1.1111	0.00039798	358.1904242614322	33.378	0.5587	34.13	33.891	34.45	0.75225					27	10	4	0	0	0	0.46038	1	11957	11957		15.248	4.449	1	3677800	+		50427	20252	36697	36988	49243	49243					0.01725180025687223
SLWGLFHNV	9	Unmodified	_SLWGLFHNV_					0	0	0			REV__ENST00000497660.5_1_1:8390216-8404070:+|nuORF	REV__ENST00000497660.5_1_1:8390216-8404070:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	358.2801208496094	3	358.190665	1071.55016	-0.54845	-0.00019645	1.6595	0.00059443	1.1111	0.00039798	358.1904242614322	33.378	0.5587	34.13	33.891	34.45	0.75225					27	10	4	0	0	0	0.63622	1	11935	11935		19.362	1.9193	1	3677800	+		50428	20252	36697	36988	49244	49244					0.01725180025687223
SLWGPYKDI	9	Unmodified	_SLWGPYKDI_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	A375_MHC_IP_R1	1	541.2136840820312	2	539.782025	1077.5495	-0.93763	-0.00050612	-0.3135	-0.00016922	-1.2511	-0.00067534	539.781767148556	135.93	0.30838	135.93	135.79	136.1	0					15	5	4	0	0	0	0.63811	1	52389	52389		12.532	3.9383	1	3012500			50429	6149	36698	36989	49245	49245					0.013823405859739069
SLWGQPAEA	9	Unmodified	_SLWGQPAEA_					0	0	0		ENST00000477429.1_1_X:107683355-107686177:+|nuORF;ENST00000470339.1_1_X:107683355-107812096:+|nuORF;nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5	ENST00000477429.1_1_X:107683355-107686177:+|nuORF	ENST00000477429.1_1_X:107683355-107686177:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	479.6371765136719	2	479.735074	957.455596	-0.35229	-0.00016901	0.73264	0.00035147	0.38035	0.00018247	479.73540361983726	70.825	1.0244	70.825	70.289	71.313	0					47	19	4	0	0	0	0.11849	1	25657	25657		61.602	30.965	1	24353000			50430	8886	36699	36990	49246	49246					-0.024833785162968525
SLWGQPAEA	9	Unmodified	_SLWGQPAEA_					0	0	0		ENST00000477429.1_1_X:107683355-107686177:+|nuORF;ENST00000470339.1_1_X:107683355-107812096:+|nuORF;nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5	ENST00000477429.1_1_X:107683355-107686177:+|nuORF	ENST00000477429.1_1_X:107683355-107686177:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	481.1788024902344	2	479.735074	957.455596	-0.49472	-0.00023734	0.29031	0.00013927	-0.20441	-9.8064E-05	479.7351788417226	70.087	1.1687	70.821	70.284	71.453	0.73421					56	22	4	0	0	0	0.27064	1	26631	26631		32.786	4.2988	1	20965000			50431	8886	36699	36990	49247	49247					-0.024833785162968525
SLWGRPQS	8	Unmodified	_SLWGRPQS_					0	0	0		STAB1|p.G1941S|1|0.59|ENSG00000010327|chr3:52520918-52520918|G/A|missense_variant	STAB1|p.G1941S|1|0.59|ENSG00000010327|chr3:52520918-52520918|G/A|missense_variant	STAB1|p.G1941S|1|0.59|ENSG00000010327|chr3:52520918-52520918|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	929.720458984375	1	930.479191	929.471915	-0.34116	-0.00031744	1.4082	0.0013103	1.0671	0.00099287	930.4783677110015	128.21	0.51126	128.45	128.25	128.76	0.23946					11	9	2	0	0	0	0.96266	1	50390	50390		16.942	2.3606	1	2469200			50432	29257	36700	36991	49248	49248					0.004357474404741879
SLWHQDDI	8	Unmodified	_SLWHQDDI_					0	0	0			REV__nc|ENSG00000149926|Q71RH2-2|TLCD3B	REV__nc|ENSG00000149926|Q71RH2-2|TLCD3B	MULTI-SECPEP	A375_MHC_IP_R1	1	507.98046875	2	507.237981	1012.46141	-0.29626	-0.00015027	0.13974	7.088E-05	-0.15652	-7.9392E-05	507.23786666683674	51.163	0.5093	51.163	50.966	51.475	0					19	9	3	0	0	0	0.97144	1	18205	18205		2.3027	0	1	1484100	+		50433	19702	36701	36992	49249	49249					-0.04432280004630229
SLWKEVSEL	9	Unmodified	_SLWKEVSEL_					0	0	0		nc|ENSG00000025156|Q03933-2|HSF2;ENSG00000025156|ENST00000368455|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	MULTI-SECPEP	A375_MHC_IP_R1	1	546.1919555664062	2	545.792589	1089.57063	-0.40657	-0.0002219	-0.11026	-6.0177E-05	-0.51683	-0.00028208	545.7924567367678	92.169	0.55578	92.169	91.857	92.413	0					18	10	2	0	0	0	0.22619	1	33862	33862		72.968	72.968	1	4163900			50434	1086	36702	36993	49250	49250					0.029423058948623293
SLWKEVSEL	9	Unmodified	_SLWKEVSEL_					0	0	0		nc|ENSG00000025156|Q03933-2|HSF2;ENSG00000025156|ENST00000368455|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	MULTI-SECPEP	A375_MHC_IP_R2	2	546.1923217773438	2	545.792589	1089.57063	-0.70398	-0.00038422	0.44662	0.00024376	-0.25735	-0.00014046	545.7928687745798	91.311	0.50621	92.046	91.767	92.273	0.7345					15	9	2	0	0	0	0.15736	1	34746	34746		70.332	7.7593	1	6799700			50435	1086	36702	36993	49251	49251					0.029423058948623293
SLWKGLVGI	9	Unmodified	_SLWKGLVGI_					0	0	0		nc|ENSG00000169446|Q8N4V1-2|MMGT1;ENSG00000169446|ENST00000305963|MMGT1	nc|ENSG00000169446|Q8N4V1-2|MMGT1	nc|ENSG00000169446|Q8N4V1-2|MMGT1	MULTI-MSMS	A375_MHC_IP_R1	1	486.7060546875	2	486.797478	971.580402	-0.0050634	-2.4648E-06	0.28576	0.00013911	0.2807	0.00013664	486.79752480807275	107.87	0.60896	107.87	107.6	108.21	0					25	11	3	0	0	0	0.29123	1	39667	39667		31.268	14.326	1	5539300			50436	14758	36703	36994	49252	49252					0.09347538690906276
SLWKGLVGI	9	Unmodified	_SLWKGLVGI_					0	0	0		nc|ENSG00000169446|Q8N4V1-2|MMGT1;ENSG00000169446|ENST00000305963|MMGT1	nc|ENSG00000169446|Q8N4V1-2|MMGT1	nc|ENSG00000169446|Q8N4V1-2|MMGT1	MULTI-MSMS	A375_MHC_IP_R2	2	487.1972351074219	2	486.797478	971.580402	-0.667	-0.0003247	-0.11504	-5.6003E-05	-0.78205	-0.0003807	486.7974289725304	106.83	0.6085	107.59	107.34	107.95	0.75977					23	11	3	0	0	0	0.015356	1	40369	40369		89.401	89.401	1	4116600			50437	14758	36703	36994	49253	49253					0.09347538690906276
SLWLGPGL	8	Unmodified	_SLWLGPGL_					0	0	0		LAMB3|p.S611L|1|0.33|ENSG00000196878|chr1:209625792-209625792|G/A|missense_variant	LAMB3|p.S611L|1|0.33|ENSG00000196878|chr1:209625792-209625792|G/A|missense_variant	LAMB3|p.S611L|1|0.33|ENSG00000196878|chr1:209625792-209625792|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	422.2595520019531	2	421.742171	841.469789	-0.089706	-3.7833E-05	0.75832	0.00031981	0.66861	0.00028198	421.74230605330206	33.1	0.35313	33.1	32.938	33.291	0					12	6	2	0	0	0	0.7758	1	10852	10852		10.183	0	1	3376600			50438	14283	36704	36995	49254	49254					0.042713187026720334
SLWLHFYLWWL	11	Unmodified	_SLWLHFYLWWL_					0	0	0		ENST00000521938.5_1_8:27950677-27967964:+|nuORF	ENST00000521938.5_1_8:27950677-27967964:+|nuORF	ENST00000521938.5_1_8:27950677-27967964:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	782.8092651367188	2	782.410998	1562.80744	-1.3472	-0.001054	-0.77233	-0.00060428	-2.1195	-0.0016583	782.4102191142331	59.739	0.30416	60.486	60.349	60.653	0.74714					13	5	3	0	0	0	0.73779	1	22634	22634		1.4819	1.1313	1	3080400			50439	13018	36705	36996	49255	49255					0.04855077179036016
SLWLREKEL	9	Unmodified	_SLWLREKEL_					0	0	0			REV__ENST00000494241.5_1_2:71631035-71653641:+|nuORF	REV__ENST00000494241.5_1_2:71631035-71653641:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	392.29254150390625	3	391.892396	1172.65536	0.24777	9.7099E-05	0.19933	7.8114E-05	0.44709	0.00017521	391.89239770983687	38.654	0.35676	38.654	38.475	38.832	0					11	6	2	0	0	0	0.77948	1	13170	13170		6.6304	2.754	1	2960100	+		50440	25431	36706	36997	49256	49256					0.07593676431474705
SLWLREKEL	9	Unmodified	_SLWLREKEL_					0	0	0			REV__ENST00000494241.5_1_2:71631035-71653641:+|nuORF	REV__ENST00000494241.5_1_2:71631035-71653641:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	391.892396	1172.65536	-0.34528	-0.00013531	0.35385	0.00013867	0.0085718	3.3592E-06	391.892466668639	37.82	0.30553	38.595	38.382	38.687	0.77451	-0.029665	0.00010882	NaN	6.6304	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2711700	+		50441	25431	36706	36997							0.07593676431474705
SLWPDTAVA	9	Unmodified	_SLWPDTAVA_					0	0	0		ENSG00000095752|ENST00000264563|IL11	ENSG00000095752|ENST00000264563|IL11	ENSG00000095752|ENST00000264563|IL11	MULTI-MSMS	A375_MHC_IP_R1	1	959.4013671875	1	959.483273	958.475997	0.11064	0.00010615	-0.044134	-4.2346E-05	0.066503	6.3808E-05	959.483094868376	98.384	0.86504	98.384	97.948	98.813	0					46	16	4	0	0	0	0.2002	1	36295	36295		37.974	5.6685	1	15395000			50442	2048	36707	36998	49257	49257					-0.0049020785647826415
SLWPDTAVA	9	Unmodified	_SLWPDTAVA_					0	0	0		ENSG00000095752|ENST00000264563|IL11	ENSG00000095752|ENST00000264563|IL11	ENSG00000095752|ENST00000264563|IL11	MULTI-MSMS	A375_MHC_IP_R2	2	480.6446838378906	2	480.245275	958.475997	-0.67974	-0.00032644	0.18452	8.8616E-05	-0.49521	-0.00023782	480.24530649674307	97.662	0.6618	98.418	98.025	98.687	0.75586					25	12	3	0	0	0	0.077132	1	37053	37053		54.774	20.671	1	2170300			50443	2048	36707	36998	49258	49258					-0.0049020785647826415
SLWPDTAVA	9	Unmodified	_SLWPDTAVA_					0	0	0		ENSG00000095752|ENST00000264563|IL11	ENSG00000095752|ENST00000264563|IL11	ENSG00000095752|ENST00000264563|IL11	MULTI-MATCH	A375_MHC_IP_R2	2		1	959.483273	958.475997	-0.23199	-0.00022259	-0.10352	-9.9328E-05	-0.33551	-0.00032192	959.4830868684962	97.651	0.81533	98.407	97.974	98.79	0.75586	0.011517	-2.4021E-05	NaN	37.974	42	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15254000			50444	2048	36707	36998							-0.0049020785647826415
SLWQKVIPD	9	Unmodified	_SLWQKVIPD_					0	0	0		ENSG00000149260|ENST00000648180|CAPN5;ENST00000533889.1_1_11:76804778-76823844:+|nuORF	ENSG00000149260|ENST00000648180|CAPN5	ENSG00000149260|ENST00000648180|CAPN5	MULTI-SECPEP	A375_MHC_IP_R2	2	543.7039794921875	2	543.303124	1084.5917	-0.68843	-0.00037403	2.1856	0.0011875	1.4972	0.00081344	543.3037468168558	100.96	0.66492	101.73	101.5	102.16	0.76428					22	12	3	0	0	0	0.46045	1	38349	38349		36.127	9.2434	1	1719800			50445	5793	36708	36999	49259	49259					0.05278315994382865
SLWRAEDI	8	Unmodified	_SLWRAEDI_					0	0	0			REV__ENSG00000063601|ENST00000445323|MTMR1	REV__ENSG00000063601|ENST00000445323|MTMR1	MULTI-MSMS	A375_MHC_IP_R1	1	495.65625	2	495.256174	988.497795	-0.053376	-2.6435E-05	0.2232	0.00011054	0.16982	8.4105E-05	495.25640929691866	49.537	0.91584	49.537	49.134	50.049	0					32	17	3	0	0	0	0.45507	1	17520	17520		50.855	3.1063	1	3109800	+		50446	16470	36709	37000	49260	49260					0.003085968920800042
SLWRKTEV	8	Unmodified	_SLWRKTEV_					0	0	0			REV__nc|ENSG00000134759|Q6IA86-4|ELP2	REV__nc|ENSG00000134759|Q6IA86-4|ELP2	MULTI-SECPEP	A375_MHC_IP_R2	2	510.1869812011719	2	509.787641	1017.56073	-0.95904	-0.0004889	0.19294	9.8358E-05	-0.7661	-0.00039055	509.7878011595036	71.213	0.91278	71.947	71.706	72.618	0.73421					28	17	3	0	0	0	0.91495	1	27036	27036		7.9102	0.62092	1	2084700	+		50447	27236	36710	37001	49261	49261					0.05265162680132107
SLWRNTSHDY	10	Unmodified	_SLWRNTSHDY_					0	0	0			REV__ENSG00000163376|ENST00000417314|KBTBD8	REV__ENSG00000163376|ENST00000417314|KBTBD8	MULTI-SECPEP	A375_MHC_IP_R1	1	640.57421875	2	639.796726	1277.5789	-0.55764	-0.00035678	-4.4084	-0.0028205	-4.966	-0.0031773	640.2960855707578	77.959	0.25548	77.959	77.742	77.998	0					5	4	2	0	0	0	0.92957	1	28389	28389		6.2058	2.9245	1	790330	+		50448	20354	36711	37002	49262	49262					-0.04878747135808226
SLWRPIIL	8	Unmodified	_SLWRPIIL_					0	0	0		ENST00000585344.6_3_18:59830806-59854340:-|nuORF	ENST00000585344.6_3_18:59830806-59854340:-|nuORF	ENST00000585344.6_3_18:59830806-59854340:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	499.71295166015625	2	499.313295	996.612037	-0.46751	-0.00023343	0.12159	6.0714E-05	-0.34592	-0.00017272	499.31326964357584	89.294	0.55262	90.025	89.786	90.339	0.7318					19	10	3	0	0	0	0.88903	1	34009	34009		24.021	0	1	1492100			50449	13714	36712	37003	49263	49263					0.11359531444838922
SLWSIISKV	9	Unmodified	_SLWSIISKV_					0	0	0		ENSG00000062716|ENST00000262291|VMP1;GRB2-VMP1|1|fusion;RPS6KB1-VMP1|3|fusion;RPS6KB1-VMP1|4|fusion	ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	MULTI-MSMS	A375_MHC_IP_R2	2	517.2072143554688	2	516.808042	1031.60153	-0.77695	-0.00040153	0.30024	0.00015517	-0.47671	-0.00024637	516.8081099350087	121.81	0.50664	122.25	121.98	122.48	0.44488					14	9	3	0	0	0	0.0099737	1	46651	46651		96.367	38.645	1	13224000			50450	1333	36713	37004	49264	49264					0.08699503999764602
SLWSRWKI	8	Unmodified	_SLWSRWKI_					0	0	0		MRC1|p.G134S|1|0.49|ENSG00000260314|chr10:17823412-17823412|G/A|missense_variant	MRC1|p.G134S|1|0.49|ENSG00000260314|chr10:17823412-17823412|G/A|missense_variant	MRC1|p.G134S|1|0.49|ENSG00000260314|chr10:17823412-17823412|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	359.6063537597656	3	359.206426	1074.59745	0.2122	7.6223E-05	-0.2798	-0.00010051	-0.067605	-2.4284E-05	359.2062460601005	56.547	0.96647	56.547	56.244	57.211	0					32	18	3	0	0	0	0.95423	1	20256	20256		9.3831	7.6408	1	5250200			50451	14398	36714	37005	49265	49265					0.06313459296711699
SLWTPSGTTL	10	Unmodified	_SLWTPSGTTL_					0	0	0		ENST00000395693.7_2_22:50962266-50962377:-|nuORF	ENST00000395693.7_2_22:50962266-50962377:-|nuORF	ENST00000395693.7_2_22:50962266-50962377:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	531.7023315429688	2	531.776939	1061.53933	-0.67469	-0.00035879	0.65028	0.0003458	-0.024418	-1.2985E-05	531.7768924359513	102.51	0.71188	103.28	103.02	103.74	0.76429					29	13	3	0	0	0	0.70329	1	38772	38772		10.824	10.824	1	3573600			50452	11473	36715	37006	49266	49266					0.011017328607522359
SLWWWRLHKFI	11	Unmodified	_SLWWWRLHKFI_					0	0	0			REV__ENST00000575955.1_1_17:4120189-4167236:-|nuORF	REV__ENST00000575955.1_1_17:4120189-4167236:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	524.166015625	3	524.625984	1570.85612	-0.40874	-0.00021443	-1.8133	-0.00095129	-2.222	-0.0011657	524.6252894686966	89.146	0.35385	89.146	88.97	89.323	0					10	6	2	0	0	0	1.0011	1	32688	32688		0.08335	0	1	1089700	+		50453	26310	36716	37007	49267	49267					0.09352990538764061
SLYCSQGDV	9	Unmodified	_SLYCSQGDV_					0	0	0		ENST00000170447.11_1_3:12623768-12623849:+|nuORF	ENST00000170447.11_1_3:12623768-12623849:+|nuORF	ENST00000170447.11_1_3:12623768-12623849:+|nuORF	MSMS	A375_MHC_IP_R1	1	486.2052307128906	2	486.210575	970.406597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.678	1	53.678	53.178	54.178	0								0	0	0	0.15486	1	19148	19148		12.532	0	1				50454	10068	36717	37008	49268	49268					-0.07979034867537393
SLYDALNQYY	10	Unmodified	_SLYDALNQYY_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	A375_MHC_IP_R1	1	625.3184204101562	2	625.290411	1248.56627	-0.359	-0.00022448	2.0499	0.0012818	1.6909	0.0010573	625.2923223130355	92.319	0.25219	92.319	92.16	92.413	0					6	4	2	0	0	0	0.71866	1	33869	33869		3.9444	0	1	2226900			50455	7831	36718	37009	49269	49269					-0.04807203318705433
SLYDELRNL	9	Unmodified	_SLYDELRNL_					0	0	0		ENSG00000130479|ENST00000324096|MAP1S;nc|ENSG00000130479|Q66K74-2|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	MULTI-SECPEP	A375_MHC_IP_R1	1	562.1924438476562	2	561.793121	1121.57169	-0.21716	-0.000122	-0.51579	-0.00028977	-0.73296	-0.00041177	561.792455110962	107.72	0.81464	107.72	107.34	108.15	0					21	15	2	0	0	0	0.36673	1	39544	39544		38.615	8.7742	1	2084200			50456	4246	36719	37010	49270	49270					0.0157652026375672
SLYDELRNL	9	Unmodified	_SLYDELRNL_					0	0	0		ENSG00000130479|ENST00000324096|MAP1S;nc|ENSG00000130479|Q66K74-2|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	MULTI-MATCH	A375_MHC_IP_R2	2		2	561.793121	1121.57169	-0.66159	-0.00037168	0.13618	7.6506E-05	-0.52541	-0.00029517	561.7931055060969	106.85	0.6087	107.61	107.29	107.9	0.75977	-0.056598	0.00027954	NaN	32.037	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1230600			50457	4246	36719	37010							0.0157652026375672
SLYDVPVGA	9	Unmodified	_SLYDVPVGA_					0	0	0		ENST00000379312.7_3_16:67562815-67572402:+|nuORF;ENST00000566920.5_3_16:67563967-67572402:+|nuORF;ENST00000565176.5_3_16:67565474-67572402:+|nuORF;ENST00000566559.5_3_16:67572255-67572402:+|nuORF;ENST00000540839.7_3_16:67563547-67572402:+|nuORF	ENST00000379312.7_3_16:67562815-67572402:+|nuORF	ENST00000379312.7_3_16:67562815-67572402:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	460.64923095703125	2	460.739825	919.465098	-0.31936	-0.00014714	0.051057	2.3524E-05	-0.2683	-0.00012362	460.73983400744896	83.755	0.70936	83.755	83.432	84.141	0					25	13	3	0	0	0	0.1478	1	30606	30606		42.095	9.9776	1	2236400			50458	11332	36720	37011	49271	49271					0.002143897692462815
SLYDVPVGA	9	Unmodified	_SLYDVPVGA_					0	0	0		ENST00000379312.7_3_16:67562815-67572402:+|nuORF;ENST00000566920.5_3_16:67563967-67572402:+|nuORF;ENST00000565176.5_3_16:67565474-67572402:+|nuORF;ENST00000566559.5_3_16:67572255-67572402:+|nuORF;ENST00000540839.7_3_16:67563547-67572402:+|nuORF	ENST00000379312.7_3_16:67562815-67572402:+|nuORF	ENST00000379312.7_3_16:67562815-67572402:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	460.6493225097656	2	460.739825	919.465098	-0.43131	-0.00019872	-0.24036	-0.00011074	-0.67167	-0.00030946	460.73968279921047	83.066	0.55486	83.806	83.494	84.049	0.73962					22	10	3	0	0	0	0.2264	1	31610	31610		36.044	11.37	1	3161000			50459	11332	36720	37011	49272	49272					0.002143897692462815
SLYDWNVKL	9	Unmodified	_SLYDWNVKL_					0	0	0		ENST00000497453.1_1_1:154524878-154531400:-|nuORF;nc|ENSG00000160714|Q7Z7E8-2|UBE2Q1;ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000467683.5_1_1:154523946-154525290:-|nuORF	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	569.6998901367188	2	569.300581	1136.58661	-0.26527	-0.00015102	-0.24886	-0.00014167	-0.51413	-0.00029269	569.3006644749298	102.3	0.65569	102.3	102.05	102.71	0					28	12	3	0	0	0	0.11849	1	37605	37605		70.332	20.399	1	4046200			50460	6437	36721	37012	49273	49273					0.02378012131748619
SLYDWNVKL	9	Unmodified	_SLYDWNVKL_					0	0	0		ENST00000497453.1_1_1:154524878-154531400:-|nuORF;nc|ENSG00000160714|Q7Z7E8-2|UBE2Q1;ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000467683.5_1_1:154523946-154525290:-|nuORF	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	569.6546020507812	2	569.300581	1136.58661	-0.24581	-0.00013994	-0.36111	-0.00020558	-0.60692	-0.00034552	569.3006690931173	101.5	0.55801	102.27	102.01	102.57	0.76428					24	10	3	0	0	0	0.082375	1	38437	38437		53.833	17.706	1	4043700			50461	6437	36721	37012	49274	49274					0.02378012131748619
SLYDYNPNL	9	Unmodified	_SLYDYNPNL_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-SECPEP	A375_MHC_IP_R1	1	550.1585083007812	2	549.758746	1097.50294	-0.74395	-0.00040899	0.095735	5.2631E-05	-0.64822	-0.00035636	549.75878569901	86.399	0.65882	86.399	86.072	86.73	0					40	12	4	0	0	0	0.011145	1	31638	31638		118.89	118.89	1	14112000			50462	8551	36722	37013	49275	49275					-0.041911440359626795
SLYDYNPNL	9	Unmodified	_SLYDYNPNL_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-SECPEP	A375_MHC_IP_R2	2	550.1583251953125	2	549.758746	1097.50294	-0.60845	-0.0003345	-0.022621	-1.2436E-05	-0.63107	-0.00034694	549.7587111509108	85.813	0.96602	86.549	86.137	87.103	0.73601					30	18	2	0	0	0	0.0090265	1	32574	32574		144.35	144.35	1	15532000			50463	8551	36722	37013	49276	49276					-0.041911440359626795
SLYEDRII	8	Unmodified	_SLYEDRII_					0	0	0		ENSG00000204815|ENST00000377540|ODAD4	ENSG00000204815|ENST00000377540|ODAD4	ENSG00000204815|ENST00000377540|ODAD4	MULTI-SECPEP	A375_MHC_IP_R1	1	504.68310546875	2	504.771657	1007.52876	-0.35886	-0.00018114	-2.5332	-0.0012787	-2.892	-0.0014598	504.7703382823988	93.824	0.55619	93.824	93.584	94.14	0					12	10	2	0	0	0	0.93661	1	34558	34558		6.7232	0	1	487460			50464	9480	36723	37014	49277	49277					0.025297502063381216
SLYEENNKL	9	Unmodified	_SLYEENNKL_					0	0	0		GCC2|p.N877Sfs*6|1|0.13|ENSG00000135968|chr2:108471956-108471957|AG/-|frameshift_variant;ENSG00000135968|ENST00000309863|GCC2	GCC2|p.N877Sfs*6|1|0.13|ENSG00000135968|chr2:108471956-108471957|AG/-|frameshift_variant	GCC2|p.N877Sfs*6|1|0.13|ENSG00000135968|chr2:108471956-108471957|AG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	555.6768188476562	2	555.277303	1108.54005	-1.3804	-0.00076652	0.77706	0.00043148	-0.60337	-0.00033504	555.2776462022214	36.893	0.45584	37.664	37.461	37.917	0.7709					18	8	3	0	0	0	0.02114	1	13475	13475		82.529	28.697	1	5296400			50465	4735	36724	37015	49278	49278					-0.009874724901919762
SLYELVYNF	9	Unmodified	_SLYELVYNF_					0	0	0			REV__tr|U7SU17|U7SU17_FUSNUtRNAthreonylcarbamoyladenosinebiosynthesisproteinTsaEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01065PE=3SV=1	REV__tr|U7SU17|U7SU17_FUSNUtRNAthreonylcarbamoyladenosinebiosynthesisproteinTsaEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01065PE=3SV=1	MSMS	A375_MHC_IP_R1	1	574.209228515625	2	574.28714	1146.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.763	1	99.763	99.263	100.26	0								0	0	0	0.1535	1	36654	36654		15.847	1.2655	1		+		50466	28526	36725	37016	49279	49279					-0.00769096479439213
SLYEMVSRV	9	Oxidation (M)	_SLYEM(Oxidation (M))VSRV_		SLYEM(1)VSRV		SLYEM(100)VSRV	0	0	1		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	A375_MHC_IP_R1	1	550.6755981445312	2	550.276249	1098.53795	-0.35975	-0.00019796	-0.42057	-0.00023143	-0.78031	-0.00042939	550.2760774849068	54.19	0.70606	54.19	53.861	54.567	0					35	13	4	0	0	0	0.0092755	1	19311	19311		103.82	59.965	1	12092000			50467	5785	36726	37017	49280	49280		310			-0.007382244996506415
SLYEMVSRV	9	Oxidation (M)	_SLYEM(Oxidation (M))VSRV_		SLYEM(1)VSRV		SLYEM(76)VSRV	0	0	1		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-SECPEP	A375_MHC_IP_R1	1	550.67578125	2	550.276249	1098.53795	-0.72579	-0.00039939	0.80587	0.00044345	0.080079	4.4066E-05	550.2766435144478	52.912	0.65812	52.912	52.643	53.301	0					28	12	3	0	0	0	0.049608	1	18808	18808		75.571	25.638	1	10690000			50468	5785	36726	37017	49281	49281		310			-0.007382244996506415
SLYEMVSRV	9	Oxidation (M)	_SLYEM(Oxidation (M))VSRV_		SLYEM(1)VSRV		SLYEM(69)VSRV	0	0	1		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	A375_MHC_IP_R2	2	550.6759643554688	2	550.276249	1098.53795	-1.149	-0.00063227	0.1647	9.0629E-05	-0.9843	-0.00054164	550.2765033659313	52.147	0.45694	52.899	52.677	53.134	0.75225					28	8	4	0	0	0	0.037085	2	19622	19622;19709		69.338	33.211	1	13864000			50469	5785	36726	37017	49282;49283	49282		310			-0.007382244996506415
SLYEMVSRV	9	Oxidation (M)	_SLYEM(Oxidation (M))VSRV_		SLYEM(1)VSRV		SLYEM(94)VSRV	0	0	1		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	A375_MHC_IP_R2	2	550.676025390625	2	550.276249	1098.53795	-1.3373	-0.00073587	0.38337	0.00021096	-0.9539	-0.00052491	550.2764833560291	53.472	0.6125	54.223	53.893	54.505	0.75105					26	11	3	0	0	0	0.01185	2	20141	20132;20141		93.938	50.08	1	17948000			50470	5785	36726	37017	49284;49285	49285		310			-0.007382244996506415
SLYEMVSRV	9	Unmodified	_SLYEMVSRV_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-SECPEP	A375_MHC_IP_R1	1	542.6785278320312	2	542.278792	1082.54303	-0.73586	-0.00039904	-0.17819	-9.6629E-05	-0.91406	-0.00049567	542.2787937513442	80.371	1.4207	80.371	79.983	81.404	0					54	27	3	0	0	0	0.025037	1	29309	29309		100.09	48.461	1	28849000			50471	5785	36726	37018	49286	49286					0.005060793629809268
SLYEMVSRV	9	Unmodified	_SLYEMVSRV_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-SECPEP	A375_MHC_IP_R2	2	542.1375732421875	2	542.278792	1082.54303	-0.73501	-0.00039858	-0.21411	-0.00011611	-0.94912	-0.00051469	542.2786852855988	79.58	1.2184	80.324	79.642	80.86	0.74474					57	23	4	0	0	0	0.021951	1	30173	30173		103.82	57.803	1	25622000			50472	5785	36726	37018	49287	49287					0.005060793629809268
SLYERQLHRM	10	Unmodified	_SLYERQLHRM_					0	0	0			REV__nc|ENSG00000168491|Q8TBZ0-2|CCDC110	REV__nc|ENSG00000168491|Q8TBZ0-2|CCDC110	MULTI-SECPEP	A375_MHC_IP_R1	1	445.1795349121094	3	444.899556	1331.67684	0.037747	1.6793E-05	0.44633	0.00019857	0.48408	0.00021537	444.89975000934396	70.965	0.56435	70.965	70.698	71.262	0					32	10	4	0	0	0	0.93406	1	25746	25746		6.1918	6.1918	1	8023700	+		50473	20860	36727	37019	49288	49288					0.024267381885238137
SLYERQLHRM	10	Unmodified	_SLYERQLHRM_					0	0	0			REV__nc|ENSG00000168491|Q8TBZ0-2|CCDC110	REV__nc|ENSG00000168491|Q8TBZ0-2|CCDC110	MULTI-MATCH	A375_MHC_IP_R2	2		3	444.899556	1331.67684	-0.31679	-0.00014094	0.21922	9.7531E-05	-0.097567	-4.3407E-05	444.8996210007004	70.094	0.60846	70.828	70.591	71.2	0.73421	-0.068831	-0.00019113	NaN	6.1918	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8042700	+		50474	20860	36727	37019							0.024267381885238137
SLYFPADEY	9	Unmodified	_SLYFPADEY_					0	0	0			REV__nc|ENSG00000165185|Q8N8K9-2|KIAA1958	REV__nc|ENSG00000165185|Q8N8K9-2|KIAA1958	MULTI-MSMS	A375_MHC_IP_R2	2	552.66650390625	2	552.747847	1103.48114	-0.87915	-0.00048595	0.44581	0.00024642	-0.43334	-0.00023953	552.7481747811946	44.973	1.0168	45.742	44.985	46.001	0.7691					28	19	2	0	0	0	0.43185	1	16806	16806		23.148	2.7339	1	4454500	+		50475	27331	36728	37020	49289	49289					-0.06645948784534994
SLYGGNAVVEL	11	Unmodified	_SLYGGNAVVEL_					0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-MSMS	A375_MHC_IP_R1	1	561.6953735351562	2	561.295496	1120.57644	-0.40763	-0.0002288	0.10915	6.1267E-05	-0.29848	-0.00016753	561.2956387465059	101.49	0.75743	101.49	101.09	101.85	0					23	14	2	0	0	0	0.21365	1	37284	37284		53.404	9.5457	1	2447900			50476	8390	36729	37021	49290	49290					0.02097404406526948
SLYGGNAVVEL	11	Unmodified	_SLYGGNAVVEL_					0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-SECPEP	A375_MHC_IP_R2	2	561.695068359375	2	561.295496	1120.57644	-0.43991	-0.00024692	-0.74973	-0.00042082	-1.1896	-0.00066774	561.2954524770514	100.72	0.56509	101.49	101.13	101.7	0.76278					20	10	3	0	0	0	0.34348	1	38198	38198		55.503	30.103	1	2036900			50477	8390	36729	37021	49291	49291					0.02097404406526948
SLYGGTITI	9	Unmodified	_SLYGGTITI_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	A375_MHC_IP_R1	1	926.6572875976562	1	924.503674	923.496398	-0.081815	-7.5638E-05	-0.32656	-0.00030191	-0.40838	-0.00037755	924.5033184123344	99.549	1.8717	99.549	99.168	101.04	0					123	36	5	0	0	0	0.12592	1	36682	36682		46.021	8.047	1	810370000			50478	6157	36730	37022	49292	49292					0.03158962803343002
SLYGGTITI	9	Unmodified	_SLYGGTITI_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	A375_MHC_IP_R2	2	924.1550903320312	1	924.503674	923.496398	-0.20045	-0.00018532	-0.010032	-9.2747E-06	-0.21048	-0.00019459	924.5036243518541	98.72	1.8296	99.479	99.098	100.93	0.75977					116	35	5	0	0	0	0.0086611	1	37478	37478		128.37	35.543	1	732800000			50479	6157	36730	37022	49293	49293					0.03158962803343002
SLYGGTITI	9	Unmodified	_SLYGGTITI_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-SECPEP	A375_MHC_IP_R2	2	463.1551818847656	2	462.755475	923.496398	-0.4324	-0.0002001	0.47984	0.00022205	0.047439	2.1953E-05	462.7556902975529	98.771	0.60677	99.53	99.251	99.858	0.75977					19	11	2	0	0	0	0.050875	1	37453	37453		85.357	0	1	9771400			50480	6157	36730	37022	49294	49294					0.03158962803343002
SLYGQFRVV	9	Unmodified	_SLYGQFRVV_					0	0	0		ENSG00000119820|ENST00000238831|YIPF4	ENSG00000119820|ENST00000238831|YIPF4	ENSG00000119820|ENST00000238831|YIPF4	MULTI-SECPEP	A375_MHC_IP_R2	2	535.1950073242188	2	534.795466	1067.57638	-0.81186	-0.00043418	0.15235	8.1475E-05	-0.65952	-0.00035271	534.7954394485017	77.498	0.76793	78.241	77.958	78.726	0.74293					31	14	3	0	0	0	0.074405	1	29399	29399		79.596	35.738	1	7126700			50481	3626	36731	37023	49295	49295					0.045294491971844764
SLYGTSLSHTD	11	Unmodified	_SLYGTSLSHTD_					0	0	0		ENST00000540920.1_1_12:129500259-129500529:+|nuORF	ENST00000540920.1_1_12:129500259-129500529:+|nuORF	ENST00000540920.1_1_12:129500259-129500529:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	590.68505859375	2	590.777667	1179.54078	-0.58384	-0.00034492	2.0113	0.0011882	1.4275	0.00084333	591.280473521583	31.793	0.25477	32.53	32.3	32.555	0.73691					7	4	2	0	0	0	0.62292	1	11199	11199		21.537	3.1639	1	934340			50482	13279	36732	37024	49296	49296					-0.041806778411455525
SLYGYLRGA	9	Unmodified	_SLYGYLRGA_					0	0	0		ENSG00000165733|ENST00000374518|BMS1;ENST00000436180.1_10:48941313-48942632:-|nuORF	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	A375_MHC_IP_R2	2	500.6660461425781	2	500.266542	998.51853	-0.75667	-0.00037854	-0.085484	-4.2765E-05	-0.84216	-0.0004213	500.26653624620235	65.672	0.50813	66.41	66.121	66.629	0.73811					21	9	3	0	0	0	0.32092	1	24896	24896		29.082	4.4077	1	4062600			50483	6988	36733	37025	49297	49297					0.01921187271773306
SLYGYLRGA	9	Unmodified	_SLYGYLRGA_					0	0	0		ENSG00000165733|ENST00000374518|BMS1;ENST00000436180.1_10:48941313-48942632:-|nuORF	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-MATCH	A375_MHC_IP_R1	1		2	500.266542	998.51853	-0.5943	-0.00029731	0.075151	3.7596E-05	-0.51914	-0.00025971	500.2665917431489	66.566	0.61221	66.566	66.326	66.938	0	0.077916	9.9096E-05	NaN	29.082	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3713700			50484	6988	36733	37025							0.01921187271773306
SLYHGTFDA	9	Unmodified	_SLYHGTFDA_					0	0	0		ENSG00000160785|ENST00000359511|SLC25A44	ENSG00000160785|ENST00000359511|SLC25A44	ENSG00000160785|ENST00000359511|SLC25A44	MULTI-MSMS	A375_MHC_IP_R2	2	505.66900634765625	2	505.732532	1009.45051	-0.51043	-0.00025814	0.10115	5.1154E-05	-0.40928	-0.00020698	505.73239746566907	47.015	0.35734	47.777	47.613	47.97	0.76127					10	6	2	0	0	0	0.29981	1	17630	17630		30.637	17.594	1	1022800			50485	6441	36734	37026	49298	49298					-0.05383682378896992
SLYHHLHVA	9	Unmodified	_SLYHHLHVA_					0	0	0		ENSG00000078061|ENST00000377045|ARAF	ENSG00000078061|ENST00000377045|ARAF	ENSG00000078061|ENST00000377045|ARAF	MULTI-MSMS	A375_MHC_IP_R2	2	539.2318725585938	2	538.785433	1075.55631	-0.79527	-0.00042848	0.29221	0.00015744	-0.50306	-0.00027104	538.785536012435	63.663	1.0172	64.403	64.088	65.106	0.74022					32	19	2	0	0	0	0.3054	1	24322	24322		30.225	10.968	1	5691300			50486	1664	36735	37027	49299	49299					0.021556982572292327
SLYHQKMFEKW	11	Unmodified	_SLYHQKMFEKW_					0	0	0			REV__EDDM3B|p.R31K|1|0.24|ENSG00000181552|chr14:20770242-20770242|G/A|missense_variant	REV__EDDM3B|p.R31K|1|0.24|ENSG00000181552|chr14:20770242-20770242|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	499.6814270019531	3	499.583345	1495.72821	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.627	1	40.401	39.901	40.901	0.77451								0	0	0	0.1624	1	14639	14639		2.8433	0.4085	1		+		50487	16057	36736	37028	49300	49300					0.00017062162555703253
SLYIRPTF	8	Unmodified	_SLYIRPTF_					0	0	0		nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;ENST00000544418.1_1_12:24987681-25055019:-|nuORF;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1;BCAT1|p.G168R|1|0.28|ENSG00000060982|chr12:24878538-24878538|C/T|missense_variant	nc|ENSG00000060982|P54687-2|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	499.17913818359375	2	498.779285	995.544017	-0.56473	-0.00028167	0.49643	0.00024761	-0.068302	-3.4067E-05	498.77947952314446	66.292	0.56017	66.292	66.072	66.632	0					21	10	3	0	0	0	0.55372	1	24009	24009		57.471	23.369	1	2668000			50488	1317	36737	37029	49301	49301					0.04606661794173306
SLYKEKVG	8	Unmodified	_SLYKEKVG_					0	0	0			REV__nc|ENSG00000138185|P49961-4|ENTPD1	REV__nc|ENSG00000138185|P49961-4|ENTPD1	MSMS	A375_MHC_IP_R2	2	462.5459289550781	2	462.263468	922.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.119	1	80.864	80.364	81.364	0.74474								0	0	0	0.16876	1	30416	30416		16.942	2.104	1		+		50489	19075	36738	37030	49302	49302					0.0480266904024802
SLYKGLLSV	9	Unmodified	_SLYKGLLSV_					0	0	0		ENSG00000197275|ENST00000336148|RAD54B	ENSG00000197275|ENST00000336148|RAD54B	ENSG00000197275|ENST00000336148|RAD54B	MULTI-MSMS	A375_MHC_IP_R1	1	490.69464111328125	2	490.294768	978.574983	-0.50121	-0.00024574	-0.018614	-9.1262E-06	-0.51983	-0.00025487	490.2947508426658	84.366	0.65948	84.366	84.141	84.8	0					17	12	2	0	0	0	0.017727	1	30922	30922		86.332	32.499	1	4950300			50490	9139	36739	37031	49303	49303					0.0848381510844547
SLYKGLLSV	9	Unmodified	_SLYKGLLSV_					0	0	0		ENSG00000197275|ENST00000336148|RAD54B	ENSG00000197275|ENST00000336148|RAD54B	ENSG00000197275|ENST00000336148|RAD54B	MULTI-MSMS	A375_MHC_IP_R2	2	490.89825439453125	2	490.294768	978.574983	-0.51165	-0.00025086	-0.40945	-0.00020075	-0.92109	-0.00045161	490.2945968483503	83.386	0.50852	84.126	83.848	84.356	0.73962					18	9	3	0	0	0	0.035419	1	31730	31730		70.332	14.155	1	5631300			50491	9139	36739	37031	49304	49304					0.0848381510844547
SLYKNKEIFL	10	Unmodified	_SLYKNKEIFL_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-SECPEP	A375_MHC_IP_R1	1	419.30816650390625	3	418.907934	1253.70197	0.17594	7.3704E-05	-0.21011	-8.8016E-05	-0.034167	-1.4313E-05	418.9078293634076	59.711	0.30536	59.711	59.548	59.854	0					8	5	2	0	0	0	0.84881	1	21502	21502		24.957	11.438	1	1670200			50492	7095	36740	37032	49305	49305					0.08527116262757772
SLYKNKEIFL	10	Unmodified	_SLYKNKEIFL_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MATCH	A375_MHC_IP_R2	2		3	418.907934	1253.70197	-0.41414	-0.00017349	-0.10367	-4.3428E-05	-0.51781	-0.00021691	418.90782198459056	58.665	0.35547	59.414	59.237	59.592	0.74894	-0.14817	4.6251E-05	NaN	24.957	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1586900			50493	7095	36740	37032							0.08527116262757772
SLYLFYTCFCF	11	Unmodified	_SLYLFYTCFCF_					0	0	0		ENST00000476329.1_1_1:35998986-36020116:-|nuORF;KIAA0319L|p.L215Dfs*38|1|0.2|ENSG00000142687|chr1:35506634-35506635|AG/-|frameshift_variant;nc|ENSG00000142687|Q8IZA0-2|KIAA0319L;ENSG00000142687|ENST00000325722|KIAA0319L	ENST00000476329.1_1_1:35998986-36020116:-|nuORF	ENST00000476329.1_1_1:35998986-36020116:-|nuORF	MSMS	A375_MHC_IP_R2	2	703.8779907226562	2	703.81161	1405.60867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.869	1	98.625	98.125	99.125	0.75586								0	0	0	0.16258	1	37140	37140		5.2969	0	1				50494	5329	36741	37033	49306	49306					-0.07791267506331678
SLYLGIGWG	9	Unmodified	_SLYLGIGWG_					0	0	0		ENSG00000215644|ENST00000400723|GCGR	ENSG00000215644|ENST00000400723|GCGR	ENSG00000215644|ENST00000400723|GCGR	MSMS	A375_MHC_IP_R2	2	483.1579895019531	2	483.258185	964.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.114	1	67.85	67.35	68.35	0.73631								0	0	0	0.14812	1	25425	25425		24.674	1.5255	1				50495	9648	36742	37034	49307	49307					0.018146863858191864
SLYLNQGSHY	10	Unmodified	_SLYLNQGSHY_					0	0	0			REV__ENSG00000221878|ENST00000406070|PSG7	REV__ENSG00000221878|ENST00000406070|PSG7	MULTI-MSMS	A375_MHC_IP_R1	1	591.6824340820312	2	591.28292	1180.55129	0.055419	3.2768E-05	-0.21949	-0.00012978	-0.16407	-9.7012E-05	591.2827183922994	49.109	2.1244	49.109	47.467	49.591	0					75	41	2	0	0	0	0.47255	1	17087	17087		29.841	9.426	1	3854300	+		50496	22693	36743	37035	49308	49308					-0.03176650396017067
SLYLNQGSHY	10	Unmodified	_SLYLNQGSHY_					0	0	0			REV__ENSG00000221878|ENST00000406070|PSG7	REV__ENSG00000221878|ENST00000406070|PSG7	MULTI-MSMS	A375_MHC_IP_R2	2	591.682373046875	2	591.28292	1180.55129	-0.51226	-0.00030289	0.03878	2.293E-05	-0.47348	-0.00027996	591.2829128746539	48.173	1.5198	48.932	48.172	49.692	0.75925					48	29	2	0	0	0	0.36067	1	18087	18087		36.506	12.486	1	3115400	+		50497	22693	36743	37035	49309	49309					-0.03176650396017067
SLYLYKFMEAL	11	Unmodified	_SLYLYKFMEAL_					0	0	0			REV__EDEM3|p.L473S|1|0.28|ENSG00000116406|chr1:184712551-184712551|A/G|missense_variant	REV__EDEM3|p.L473S|1|0.28|ENSG00000116406|chr1:184712551-184712551|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	460.3084411621094	3	459.908947	1376.70501	-0.66314	-0.00030498	0.36215	0.00016656	-0.30099	-0.00013843	459.9088301174525	18.855	0.1105	19.458	19.423	19.533	0.60308					5	3	2	0	0	0	0.99606	1	5661	5661		1.3296	0	1	37707000	+		50498	16058	36744	37036	49310	49310					0.03172623325281165
SLYMDRIFFV	10	Unmodified	_SLYMDRIFFV_					0	0	0		ENST00000389682.7_1_2:122523087-122523240:+|nuORF	ENST00000389682.7_1_2:122523087-122523240:+|nuORF	ENST00000389682.7_1_2:122523087-122523240:+|nuORF	MSMS	A375_MHC_IP_R2	2	430.64752197265625	3	430.889886	1289.64783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.879	1	77.622	77.122	78.122	0.74293								0	0	0	0.15438	1	29190	29190		6.6304	3.7871	1				50499	11402	36745	37037	49311	49311					0.014592008395084122
SLYMPLVSLA	10	Unmodified	_SLYMPLVSLA_					0	0	0			REV__ENST00000505104.5_1_4:9882098-10027590:-|nuORF	REV__ENST00000505104.5_1_4:9882098-10027590:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	547.7023315429688	2	547.301736	1092.58892	-0.77816	-0.00042589	2.1347	0.0011683	1.3566	0.00074245	547.3024085276131	132.15	0.60391	132.15	131.73	132.33	0					21	11	3	0	0	0	0.70329	1	51005	51005		10.824	1.4408	1	3900900	+		50500	17586	36746	37038	49312	49312					0.0463272454521757
SLYMPLVSLA	10	Unmodified	_SLYMPLVSLA_					0	0	0			REV__ENST00000505104.5_1_4:9882098-10027590:-|nuORF	REV__ENST00000505104.5_1_4:9882098-10027590:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	547.301736	1092.58892	-0.77816	-0.00042589	2.1347	0.0011683	1.3566	0.00074245	547.3024085276131	132.15	0.60391	132.15	131.73	132.33	0	-0.037626	0.00048912	NaN	10.824	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3900900	+		50501	17586	36746	37038							0.0463272454521757
SLYMPLVSLA	10	Unmodified	_SLYMPLVSLA_					0	0	0			REV__ENST00000505104.5_1_4:9882098-10027590:-|nuORF	REV__ENST00000505104.5_1_4:9882098-10027590:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	547.301736	1092.58892	-0.75195	-0.00041154	1.6614	0.00090929	0.90945	0.00049774	547.3025989220779	132.04	0.2509	132.23	132.1	132.35	0.18953	0.037626	-2.8975E-05	NaN	10.824	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3669100	+		50502	17586	36746	37038							0.0463272454521757
SLYNDVKNF	9	Unmodified	_SLYNDVKNF_					0	0	0		tr|U7SSP1|U7SSP1_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01520PE=4SV=1	tr|U7SSP1|U7SSP1_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01520PE=4SV=1	tr|U7SSP1|U7SSP1_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01520PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6165771484375	2	550.274564	1098.53457	-1.0927	-0.0006013	1.2149	0.00066851	0.12212	6.7202E-05	550.2748249215027	60.336	1.117	61.081	60.601	61.718	0.74504					54	21	4	0	0	0	0.59098	1	22673	22673		27.629	1.3607	1	13255000			50503	29641	36747	37039	49313	49313					-0.010751512820206699
SLYNGCQEIYC	11	Unmodified	_SLYNGCQEIYC_					0	0	0		KRTAP15-1|p.T54I|1|0.09|ENSG00000186970|chr21:30440488-30440488|C/T|missense_variant	KRTAP15-1|p.T54I|1|0.09|ENSG00000186970|chr21:30440488-30440488|C/T|missense_variant	KRTAP15-1|p.T54I|1|0.09|ENSG00000186970|chr21:30440488-30440488|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	646.6646118164062	2	646.767931	1291.52131	-0.36333	-0.00023499	0.8566	0.00055402	0.49327	0.00031903	647.2706835137407	61.636	0.61274	61.636	61.382	61.994	0					24	11	3	0	0	0	0.73135	1	22311	22311		7.609	0.50723	1	2855600			50504	14237	36748	37040	49314	49314					-0.11279093447888044
SLYPQYADP	9	Unmodified	_SLYPQYADP_					0	0	0			REV__ENSG00000099812|ENST00000215582|MISP	REV__ENSG00000099812|ENST00000215582|MISP	MULTI-SECPEP	A375_MHC_IP_R1	1	526.9537963867188	2	527.248015	1052.48148	-0.19251	-0.0001015	-1.1905	-0.00062768	-1.383	-0.00072917	527.7496097412427	45.428	0.45284	45.428	45.234	45.687	0					10	8	2	0	0	0	0.65246	1	15878	15878		10.824	3.5347	1	857870	+		50505	17023	36749	37041	49315	49315					-0.042665290646709764
SLYPVTVHL	9	Unmodified	_SLYPVTVHL_					0	0	0			REV__ENST00000380358.8_2_17:7814903-7815650:+|nuORF	REV__ENST00000380358.8_2_17:7814903-7815650:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	514.178955078125	2	514.792392	1027.57023	-0.48421	-0.00024927	3.1212	0.0016068	2.637	0.0013575	514.7939404739168	103.53	0.30514	103.53	103.42	103.72	0					9	5	2	0	0	0	0.65246	1	37991	37991		21.747	9.2151	1	1356800	+		50506	24215	36750	37042	49316	49316					0.057549309656678815
SLYPVTVPDP	10	Unmodified	_SLYPVTVPDP_					0	0	0			REV__nc|ENSG00000174485|Q7Z401|DENND4A	REV__nc|ENSG00000174485|Q7Z401|DENND4A	MULTI-SECPEP	A375_MHC_IP_R2	2	363.60955810546875	3	363.193852	1086.55973	-0.24379	-8.8544E-05	0.77458	0.00028132	0.53079	0.00019278	363.19418577115533	41.48	0.3535	42.254	41.997	42.35	0.77451					11	6	2	0	0	0	0.9269	1	15326	15326		3.5871	0	1	837810	+		50507	21288	36751	37043	49317	49317					0.01990903520595566
SLYQCDYSTG	10	Unmodified	_SLYQCDYSTG_					0	0	0		ENSG00000169896|ENST00000544665|ITGAM;nc|ENSG00000169896|P11215-2|ITGAM	ENSG00000169896|ENST00000544665|ITGAM	ENSG00000169896|ENST00000544665|ITGAM	MULTI-MSMS	A375_MHC_IP_R1	1	379.89068603515625	3	379.49034	1135.44919	0.1384	5.2521E-05	0.70916	0.00026912	0.84756	0.00032164	379.4904998167332	86.401	0.60915	86.401	86.121	86.73	0					17	11	2	0	0	0	0.66308	1	31696	31696		10.315	0	1	2677300			50508	7449	36752	37044	49318	49318					-0.11311684529982813
SLYQLENY	8	Unmodified	_SLYQLENY_					0	0	0		ENSG00000254647|ENST00000381330|INS	ENSG00000254647|ENST00000381330|INS	ENSG00000254647|ENST00000381330|INS	MULTI-SECPEP	A375_MHC_IP_R1	1	514.6819458007812	2	515.248015	1028.48148	-0.52752	-0.0002718	-1.8624	-0.00095959	-2.3899	-0.0012314	515.2478164786157	83.255	0.55917	83.255	83.024	83.583	0					15	10	2	0	0	0	0.87643	1	30488	30488		32.305	11.434	1	794740			50509	9880	36753	37045	49319	49319					-0.03162529064638875
SLYQLENY	8	Unmodified	_SLYQLENY_					0	0	0		ENSG00000254647|ENST00000381330|INS	ENSG00000254647|ENST00000381330|INS	ENSG00000254647|ENST00000381330|INS	MULTI-SECPEP	A375_MHC_IP_R1	1	1029.8890380859375	1	1029.48875	1028.48148	0.16464	0.00016949	0.15775	0.0001624	0.32239	0.00033189	1029.489153664994	83.376	0.50937	83.376	83.125	83.634	0					13	9	2	0	0	0	0.14575	1	30546	30546		107.19	7.3881	1	2266300			50510	9880	36753	37045	49320	49320					-0.03162529064638875
SLYQLENY	8	Unmodified	_SLYQLENY_					0	0	0		ENSG00000254647|ENST00000381330|INS	ENSG00000254647|ENST00000381330|INS	ENSG00000254647|ENST00000381330|INS	MULTI-MATCH	A375_MHC_IP_R2	2		1	1029.48875	1028.48148	0.027517	2.8329E-05	-0.075697	-7.7929E-05	-0.04818	-4.9601E-05	1029.4883337199856	82.649	0.40338	83.392	83.195	83.598	0.74293	0.0078676	-0.00011006	NaN	107.19	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2728800			50511	9880	36753	37045							-0.03162529064638875
SLYREWYKHNL	11	Unmodified	_SLYREWYKHNL_					0	0	0			REV__ENST00000519276.1_1_5:158701561-158711936:+|nuORF	REV__ENST00000519276.1_1_5:158701561-158711936:+|nuORF	MSMS	A375_MHC_IP_R2	2	503.6278076171875	3	503.593009	1507.7572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.545	1	34.297	33.797	34.797	0.75225								0	0	0	0.16309	1	12024	12024		2.6312	1.3016	1		+		50512	25683	36754	37046	49321	49321					0.023629227832316246
SLYSAYFAAST	11	Unmodified	_SLYSAYFAAST_					0	0	0			REV__ENSG00000140323|ENST00000267889|DISP2	REV__ENSG00000140323|ENST00000267889|DISP2	MULTI-SECPEP	A375_MHC_IP_R2	2	591.1798706054688	2	590.779679	1179.5448	-0.61844	-0.00036536	0.20324	0.00012007	-0.4152	-0.00024529	590.7798711076421	32.629	0.61013	33.366	33.061	33.671	0.73691					17	11	2	0	0	0	0.84606	1	11676	11676		27.629	8.3718	1	2889000	+		50513	19203	36755	37047	49322	49322					-0.037785883474498405
SLYSQVHQI	9	Unmodified	_SLYSQVHQI_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-SECPEP	A375_MHC_IP_R1	1	538.182861328125	2	537.782556	1073.55056	-0.5933	-0.00031906	0.21515	0.0001157	-0.37815	-0.00020336	537.7826276295991	51.166	0.56005	51.166	50.915	51.475	0					30	10	4	0	0	0	0.030244	1	18137	18137		87.258	41.559	1	16641000			50514	8598	36756	37048	49323	49323					0.016725549548937124
SLYSQVHQI	9	Unmodified	_SLYSQVHQI_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-SECPEP	A375_MHC_IP_R2	2	538.1823120117188	2	537.782556	1073.55056	-1.0252	-0.00055131	0.32775	0.00017626	-0.6974	-0.00037505	537.7826991863291	50.43	0.60847	51.184	50.904	51.513	0.75406					32	11	4	0	0	0	0.061442	1	18938	18938		55.503	21.101	1	15210000			50515	8598	36756	37048	49324	49324					0.016725549548937124
SLYTNRELF	9	Unmodified	_SLYTNRELF_					0	0	0		nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1	nc|ENSG00000118007|Q8WVM7-2|STAG1	nc|ENSG00000118007|Q8WVM7-2|STAG1	MSMS	A375_MHC_IP_R1	1	571.7090454101562	2	571.795663	1141.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.913	1	37.913	37.413	38.413	0								0	0	0	0.14905	1	12813	12813		23.148	5.0134	1				50516	3521	36757	37049	49325	49325					0.011648241263856107
SMADIPLGFGV	11	Unmodified	_SMADIPLGFGV_					0	0	0		ENSG00000132603|ENST00000254940|NIP7;ENST00000485801.1_1_3:132120486-132120636:+|nuORF	ENSG00000132603|ENST00000254940|NIP7	ENSG00000132603|ENST00000254940|NIP7	MULTI-MSMS	A375_MHC_IP_R1	1	554.180908203125	2	553.781167	1105.54778	-0.75994	-0.00042084	0.9049	0.00050112	0.14496	8.0277E-05	553.7817133650043	129.68	0.30469	129.68	129.55	129.85	0					8	5	2	0	0	0	0.0013533	1	49905	49905		99.799	70.717	1	8137600			50517	4425	36758	37050	49326	49326					-0.0007703649425820913
SMAPGLTSV	9	Oxidation (M)	_SM(Oxidation (M))APGLTSV_		SM(1)APGLTSV		SM(100)APGLTSV	0	0	1		nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	MULTI-MSMS	A375_MHC_IP_R1	1	440.117431640625	2	439.718036	877.421518	-0.24208	-0.00010645	0.18378	8.0812E-05	-0.058297	-2.5634E-05	439.71802478961894	52.835	1.013	52.835	52.237	53.25	0					36	19	3	0	0	0	0.0090669	1	18676	18676		100.37	25.975	1	6559100			50518	9299	36759	37051	49327	49327		425			-0.022095429995374616
SMAPGLTSV	9	Oxidation (M)	_SM(Oxidation (M))APGLTSV_		SM(1)APGLTSV		SM(46)APGLTSV	0	0	1		nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	MULTI-MSMS	A375_MHC_IP_R1	1	878.8286743164062	1	878.428795	877.421518	-0.37955	-0.00033341	-0.123	-0.00010805	-0.50256	-0.00044146	878.4288254916482	52.519	1.3689	52.519	52.136	53.505	0					67	26	3	0	0	0	0.12592	1	18998	18998		46.021	6.0636	1	66511000			50519	9299	36759	37051	49328	49328		425			-0.022095429995374616
SMAPGLTSV	9	Oxidation (M)	_SM(Oxidation (M))APGLTSV_		SM(1)APGLTSV		SM(46)APGLTSV	0	0	1		nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	MULTI-SECPEP	A375_MHC_IP_R1	1	440.1180725097656	2	439.718036	877.421518	-0.089522	-3.9364E-05	0.030973	1.3619E-05	-0.058549	-2.5745E-05	439.71802276798473	55	2.2346	55	54.263	56.498	0					59	43	2	0	0	0	0.3213	1	19598	19598		46.021	7.8698	1	2240800			50520	9299	36759	37051	49329	49329		425			-0.022095429995374616
SMAPGLTSV	9	Oxidation (M)	_SM(Oxidation (M))APGLTSV_		SM(1)APGLTSV		SM(61)APGLTSV	0	0	1		nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	MULTI-MSMS	A375_MHC_IP_R2	2	440.1175231933594	2	439.718036	877.421518	-0.64389	-0.00028313	0.04775	2.0997E-05	-0.59614	-0.00026213	439.71801869600944	52.105	0.965	52.857	52.219	53.184	0.75225					31	18	2	0	0	0	0.05754	1	19476	19476		61.357	7.7819	1	9576200			50521	9299	36759	37051	49330	49330		425			-0.022095429995374616
SMAPGLTSV	9	Oxidation (M)	_SM(Oxidation (M))APGLTSV_		SM(1)APGLTSV		SM(68)APGLTSV	0	0	1		nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	MULTI-SECPEP	A375_MHC_IP_R2	2	878.137451171875	1	878.428795	877.421518	-0.43159	-0.00037912	-0.67286	-0.00059106	-1.1045	-0.00097018	878.428355101066	69.018	0.81101	69.753	69.423	70.234	0.73511					35	15	3	0	0	0	0.11436	1	26147	26147		68.081	28.123	1	9015000			50522	9299	36759	37051	49331	49331		425			-0.022095429995374616
SMAPGLTSV	9	Oxidation (M)	_SM(Oxidation (M))APGLTSV_					0	0	1		nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	MULTI-MATCH	A375_MHC_IP_R2	2		1	878.428795	877.421518	-0.85142	-0.00074791	-0.595	-0.00052266	-1.4464	-0.0012706	878.4288653239518	52.001	1.4708	52.753	52.169	53.639	0.75225	0.11697	-0.00027655	NaN	46.021	79	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58118000			50523	9299	36759	37051				425			-0.022095429995374616
SMAPGLTSV	9	Unmodified	_SMAPGLTSV_					0	0	0		nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	MULTI-SECPEP	A375_MHC_IP_R1	1	432.1204528808594	2	431.720578	861.426604	0.23381	0.00010094	0.078908	3.4066E-05	0.31271	0.00013501	431.72046896080633	69.857	0.55617	69.857	69.529	70.085	0					19	10	2	0	0	0	0.14422	1	25348	25348		61.357	20.909	1	2324800			50524	9299	36759	37052	49332	49332					-0.00965239136917262
SMAPGLTSV	9	Unmodified	_SMAPGLTSV_					0	0	0		nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	MULTI-SECPEP	A375_MHC_IP_R2	2	432.1203308105469	2	431.720578	861.426604	-0.13137	-5.6715E-05	-0.26356	-0.00011378	-0.39493	-0.0001705	431.72033115715465	68.973	0.60875	69.708	69.423	70.032	0.73511					20	11	2	0	0	0	0.047455	1	26142	26142		78.149	27.294	1	2039000			50525	9299	36759	37052	49333	49333					-0.00965239136917262
SMDEKVELY	9	Unmodified	_SMDEKVELY_					0	0	0		ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	MULTI-MSMS	A375_MHC_IP_R1	1	557.6598510742188	2	557.260265	1112.50598	-0.36604	-0.00020398	-0.32107	-0.00017892	-0.68712	-0.0003829	557.2598868149365	54.314	0.60633	54.314	54.013	54.619	0					24	11	3	0	0	0	0.21241	2	19342	19338;19342		37.075	14.338	1	4273500			50526	4311	36760	37053	49334;49335	49335					-0.04577636973431254
SMDEKVELY	9	Unmodified	_SMDEKVELY_					0	0	0		ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	MULTI-MSMS	A375_MHC_IP_R2	2	558.2080078125	2	557.260265	1112.50598	-1.2865	-0.0007169	0.62164	0.00034641	-0.66484	-0.00037049	557.2604113449783	53.472	0.61498	54.223	54.046	54.661	0.75105					22	11	3	0	0	0	0.51106	1	20190	20190		19.257	3.4098	1	6375400			50527	4311	36760	37053	49336	49336					-0.04577636973431254
SMDEKVELY	9	Oxidation (M)	_SM(Oxidation (M))DEKVELY_		SM(1)DEKVELY		SM(46)DEKVELY	0	0	1		ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	MULTI-SECPEP	A375_MHC_IP_R2	2	565.6577758789062	2	565.257722	1128.50089	-0.57231	-0.0003235	1.7381	0.00098247	1.1658	0.00065897	565.2598077582763	41.498	1.3247	42.273	41.895	43.22	0.77451					43	25	4	0	0	0	0.36673	1	15350	15350		45.74	27.594	1	7160100			50528	4311	36760	37054	49337	49337		225			-0.05821940836062822
SMDLYRREDRR	11	Unmodified	_SMDLYRREDRR_					0	0	0		nc|ENSG00000185920|Q13635-4|PTCH1;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1;ENST00000375290.6_3_9:98215758-98232201:-|nuORF	nc|ENSG00000185920|Q13635-4|PTCH1	nc|ENSG00000185920|Q13635-4|PTCH1	MSMS	A375_MHC_IP_R2	2	499.6543884277344	3	499.584408	1495.73139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.621	1	46.386	45.886	46.886	0.76519								0	0	0	0.16249	1	17059	17059		2.6312	0	1				50529	8707	36761	37055	49338	49338					0.003357052692763318
SMECNFVYEL	10	Unmodified	_SMECNFVYEL_					0	0	0		ENST00000527808.1_1_11:102219424-102219466:+|nuORF	ENST00000527808.1_1_11:102219424-102219466:+|nuORF	ENST00000527808.1_1_11:102219424-102219466:+|nuORF	MSMS	A375_MHC_IP_R2	2	412.24859619140625	3	412.175475	1233.5046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.2664	1	7.6815	7.1815	8.1815	0.4151								0	0	0	0.15631	1	2298	2298		0.12286	0	1				50530	13106	36762	37056	49339	49339					-0.102815943338328
SMESKENNNS	10	Unmodified	_SMESKENNNS_					0	0	0			REV__RP1|p.D362N|2|0.43|ENSG00000104237|chr8:54624966-54624966|G/A|missense_variant	REV__RP1|p.D362N|2|0.43|ENSG00000104237|chr8:54624966-54624966|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	570.1304321289062	2	570.23531	1138.45607	-0.60305	-0.00034388	1.9241	0.0010972	1.3211	0.00075334	570.7382006246829	29.042	0.45741	29.042	28.845	29.302	0					25	8	4	0	0	0	0.66308	1	9052	9052		16.149	1.3108	1	5923400	+		50531	27894	36763	37057	49340	49340					-0.10762371649389024
SMFGAGLTV	9	Oxidation (M)	_SM(Oxidation (M))FGAGLTV_		SM(1)FGAGLTV		SM(85)FGAGLTV	0	0	1		nc|ENSG00000117410|Q99437-2|ATP6V0B;ENSG00000117410|ENST00000472174|ATP6V0B	nc|ENSG00000117410|Q99437-2|ATP6V0B	nc|ENSG00000117410|Q99437-2|ATP6V0B	MULTI-SECPEP	A375_MHC_IP_R1	1	898.536376953125	1	898.43388	897.426604	-0.20593	-0.00018502	-0.058071	-5.2173E-05	-0.264	-0.00023719	898.4336133385085	87.271	2.7957	87.271	86.73	89.526	0					76	54	2	0	0	0	0.053904	1	32437	32437		85.272	58.388	1	2476700			50532	3481	36764	37058	49341	49341		177			-0.02621239136931308
SMFGAGLTV	9	Oxidation (M)	_SM(Oxidation (M))FGAGLTV_		SM(1)FGAGLTV		SM(64)FGAGLTV	0	0	1		nc|ENSG00000117410|Q99437-2|ATP6V0B;ENSG00000117410|ENST00000472174|ATP6V0B	nc|ENSG00000117410|Q99437-2|ATP6V0B	nc|ENSG00000117410|Q99437-2|ATP6V0B	MULTI-SECPEP	A375_MHC_IP_R2	2	450.12017822265625	2	449.720578	897.426604	-0.3225	-0.00014504	0.41422	0.00018628	0.091718	4.1247E-05	449.72046274390175	82.466	0.50684	83.209	82.94	83.447	0.74293					15	9	2	0	0	0	0.07754	1	31341	31341		64.236	22.142	1	1323600			50533	3481	36764	37058	49342	49342		177			-0.02621239136931308
SMFGAGLTV	9	Oxidation (M)	_SM(Oxidation (M))FGAGLTV_		SM(1)FGAGLTV		SM(52)FGAGLTV	0	0	1		nc|ENSG00000117410|Q99437-2|ATP6V0B;ENSG00000117410|ENST00000472174|ATP6V0B	nc|ENSG00000117410|Q99437-2|ATP6V0B	nc|ENSG00000117410|Q99437-2|ATP6V0B	MULTI-SECPEP	A375_MHC_IP_R2	2	897.7718505859375	1	898.43388	897.426604	-0.45279	-0.0004068	-0.63278	-0.00056851	-1.0856	-0.00097531	898.4335310606838	82.579	0.65652	83.322	82.992	83.648	0.74293					27	12	3	0	0	0	0.24548	1	31484	31484		52.268	23.782	1	12314000			50534	3481	36764	37058	49343	49343		177			-0.02621239136931308
SMFGAGLTV	9	Oxidation (M)	_SM(Oxidation (M))FGAGLTV_					0	0	1		nc|ENSG00000117410|Q99437-2|ATP6V0B;ENSG00000117410|ENST00000472174|ATP6V0B	nc|ENSG00000117410|Q99437-2|ATP6V0B	nc|ENSG00000117410|Q99437-2|ATP6V0B	MULTI-MATCH	A375_MHC_IP_R1	1		1	898.43388	897.426604	-0.1836	-0.00016495	-0.15073	-0.00013542	-0.33432	-0.00030037	898.4338074920204	83.35	0.71133	83.35	83.024	83.736	0	0.014046	0.00012967	NaN	52.268	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12779000			50535	3481	36764	37058				177			-0.02621239136931308
SMFTTRGRY	9	Unmodified	_SMFTTRGRY_					0	0	0			REV__nc|ENSG00000215811|A8MVZ5|BTNL10P	REV__nc|ENSG00000215811|A8MVZ5|BTNL10P	MSMS	A375_MHC_IP_R2	2	559.7396850585938	2	559.774208	1117.53386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.598	1	76.338	75.838	76.838	0.74052								0	0	0	0.15486	1	28698	28698		9.3831	0	1		+		50536	27498	36765	37059	49344	49344					-0.020202692026941804
SMISKLKQA	9	Unmodified	_SMISKLKQA_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-SECPEP	A375_MHC_IP_R2	2	503.9907531738281	2	503.291702	1004.56885	-0.85678	-0.00043121	-0.29032	-0.00014611	-1.1471	-0.00057732	503.29155194326	28.154	0.25366	28.833	28.655	28.909	0.67857					7	4	2	0	0	0	0.23894	1	9681	9681		55.503	24.866	1	2679400			50537	1268	36766	37060	49345	49345					0.06674973605254308
SMKILELRY	9	Unmodified	_SMKILELRY_					0	0	0		nc|ENSG00000166396|O75635-2|SERPINB7;ENSG00000166396|ENST00000398019|SERPINB7	nc|ENSG00000166396|O75635-2|SERPINB7	nc|ENSG00000166396|O75635-2|SERPINB7	MULTI-MSMS	A375_MHC_IP_R2	2	576.7227783203125	2	576.825909	1151.63727	-0.095745	-5.5228E-05	-0.24755	-0.00014279	-0.3433	-0.00019802	577.3265771493238	70.064	0.25244	70.798	70.642	70.895	0.73421					7	4	2	0	0	0	0.70886	1	26575	26575		6.2058	1.4498	1	886280			50538	7067	36767	37061	49346	49346					0.06751218185104335
SMKNQPRP	8	Unmodified	_SMKNQPRP_					0	0	0			REV__ENSG00000165805|ENST00000298699|C12orf50	REV__ENSG00000165805|ENST00000298699|C12orf50	MSMS	A375_MHC_IP_R1	1	479.18536376953125	2	479.250369	956.486184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.02	1	126.02	125.52	126.52	0								0	0	0	0.16876	1	48069	48069		11.64	2.2572	1		+		50539	20623	36768	37062	49347	49347					0.006200765971016153
SMKNQPRP	8	Unmodified	_SMKNQPRP_					0	0	0			REV__ENSG00000165805|ENST00000298699|C12orf50	REV__ENSG00000165805|ENST00000298699|C12orf50	MSMS	A375_MHC_IP_R2	2	479.1850891113281	2	479.250369	956.486184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.86	1	129.1	128.6	129.6	0.23946								0	0	0	0.16876	1	50626	50626		7.9102	0.62092	1		+		50540	20623	36768	37062	49348	49348					0.006200765971016153
SMKYSLIFFER	11	Unmodified	_SMKYSLIFFER_					0	0	0			REV__nc|ENSG00000120498|Q8IYF3-2|TEX11	REV__nc|ENSG00000120498|Q8IYF3-2|TEX11	MSMS	A375_MHC_IP_R2	2	710.788330078125	2	710.868305	1419.72206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.31	1	116.97	116.47	117.47	0.65962								0	0	0	0.16097	1	43911	43911		13.615	2.1202	1		+		50541	18125	36769	37063	49349	49349					0.028985439310872607
SMLAHKVMLDW	11	Oxidation (M)	_SM(Oxidation (M))LAHKVMLDW_		SM(0.5)LAHKVM(0.5)LDW		SM(0)LAHKVM(0)LDW	0	0	1		nc|ENSG00000142405|P59046-4|NLRP12;nc|ENSG00000142405|P59046-3|NLRP12;nc|ENSG00000142405|P59046-6|NLRP12;nc|ENSG00000142405|P59046-2|NLRP12;ENSG00000142405|ENST00000324134|NLRP12;nc|ENSG00000142405|P59046-7|NLRP12	nc|ENSG00000142405|P59046-4|NLRP12	nc|ENSG00000142405|P59046-4|NLRP12	MULTI-MSMS	A375_MHC_IP_R2	2	674.2324829101562	2	673.833408	1345.65226	-0.74361	-0.00050107	-0.69089	-0.00046554	-1.4345	-0.00096661	673.8327838481986	82.381	0.65982	83.124	82.787	83.447	0.74293					30	12	3	0	0	0	0.33856	1	31242	31242		43.772	8.8403	2	11970000			50542	5306	36770	37064	49350	49350		283;284			-0.006736580092137956
SMLAHKVMLDW	11	Oxidation (M)	_SM(Oxidation (M))LAHKVMLDW_					0	0	1		nc|ENSG00000142405|P59046-4|NLRP12;nc|ENSG00000142405|P59046-3|NLRP12;nc|ENSG00000142405|P59046-6|NLRP12;nc|ENSG00000142405|P59046-2|NLRP12;ENSG00000142405|ENST00000324134|NLRP12;nc|ENSG00000142405|P59046-7|NLRP12	nc|ENSG00000142405|P59046-4|NLRP12	nc|ENSG00000142405|P59046-4|NLRP12	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	673.833408	1345.65226	-0.74361	-0.00050107	-0.69089	-0.00046554	-1.4345	-0.00096661	673.8327838481986	82.381	0.65982	83.124	82.787	83.447	0.74293	0.070535	0.00011993	NaN	43.772	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11970000			50543	5306	36770	37064				283;284			-0.006736580092137956
SMLEPVPEL	9	Oxidation (M)	_SM(Oxidation (M))LEPVPEL_		SM(1)LEPVPEL		SM(68)LEPVPEL	0	0	1		nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	MULTI-MSMS	A375_MHC_IP_R1	1	516.1591796875	2	515.759901	1029.50525	-0.31478	-0.00016235	-0.11525	-5.9441E-05	-0.43003	-0.00022179	515.759723986021	92.965	0.5596	92.965	92.668	93.228	0					20	10	2	0	0	0	0.040308	1	34151	34151		68.081	30.107	1	1565100			50544	4294	36771	37065	49351	49351		223			-0.008324316225071016
SMLEPVPEL	9	Oxidation (M)	_SM(Oxidation (M))LEPVPEL_		SM(1)LEPVPEL		SM(68)LEPVPEL	0	0	1		nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	MULTI-MSMS	A375_MHC_IP_R2	2	516.1593627929688	2	515.759901	1029.50525	-0.68167	-0.00035158	0.38875	0.0002005	-0.29293	-0.00015108	515.759959042192	92.204	0.55476	92.943	92.585	93.14	0.73901					17	10	2	0	0	0	0.040308	1	35044	35044		68.081	30.107	1	1513200			50545	4294	36771	37065	49352	49352		223			-0.008324316225071016
SMLIDLREAVP	11	Unmodified	_SMLIDLREAVP_					0	0	0			REV__ENST00000561685.1_1_16:15168568-15177423:-|nuORF	REV__ENST00000561685.1_1_16:15168568-15177423:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	415.63006591796875	3	415.228679	1242.66421	0.85675	0.00035575	0.62941	0.00026135	1.4862	0.0006171	415.56265811544614	44.921	0.86142	44.921	44.523	45.384	0					41	16	4	0	0	0	0.73016	2	15689	15689;15707		8.7518	0.46535	1	12003000	+		50546	16842	36772	37066	49353;49354	49353					0.05258282005638648
SMLILTQGAP	10	Unmodified	_SMLILTQGAP_					0	0	0			REV__ENST00000175756.9_1_2:131131610-131131691:+|nuORF	REV__ENST00000175756.9_1_2:131131610-131131691:+|nuORF	MSMS	A375_MHC_IP_R1	1	515.6824340820312	2	515.78371	1029.55287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.33	1	143.33	142.83	143.83	0								0	0	0	0.15451	1	54988	54988		6.2058	1.4498	1		+		50547	23014	36773	37067	49355	49355					0.03927267368339926
SMMCLRTV	8	Unmodified	_SMMCLRTV_					0	0	0			REV__ENSG00000037749|ENST00000522782|MFAP3	REV__ENSG00000037749|ENST00000522782|MFAP3	MULTI-MSMS	A375_MHC_IP_R2	2	471.1245422363281	2	470.724284	939.434014	-0.50913	-0.00023966	1.0741	0.00050561	0.56499	0.00026596	470.7247522941839	89.398	0.45283	90.13	89.886	90.339	0.7318					14	8	2	0	0	0	0.70783	1	34043	34043		32.305	32.305	1	1491100	+		50548	16325	36774	37068	49356	49356					-0.03812546132519401
SMMCLRTV	8	Unmodified	_SMMCLRTV_					0	0	0			REV__ENSG00000037749|ENST00000522782|MFAP3	REV__ENSG00000037749|ENST00000522782|MFAP3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	470.724284	939.434014	-0.52455	-0.00024692	1.4228	0.00066973	0.8982	0.00042281	470.7248169089257	90.159	0.5066	90.159	89.931	90.437	0	0.014359	0.00017638	NaN	32.305	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1263500	+		50549	16325	36774	37068							-0.03812546132519401
SMMDPNHFL	9	2 Oxidation (M)	_SM(Oxidation (M))M(Oxidation (M))DPNHFL_		SM(1)M(1)DPNHFL		SM(40)M(40)DPNHFL	0	0	2		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	A375_MHC_IP_R1	1	562.6326293945312	2	562.230984	1122.44742	-0.29164	-0.00016397	1.0418	0.00058571	0.75013	0.00042175	562.2317101636794	45.757	0.66006	45.757	45.484	46.144	0					34	12	3	0	0	0	0.16945	1	16024	16024		40.239	12.61	1	7456500			50550	1082	36775	37069	49357	49357		11;12			-0.10891016819573451
SMMDPNHFL	9	2 Oxidation (M)	_SM(Oxidation (M))M(Oxidation (M))DPNHFL_		SM(1)M(1)DPNHFL		SM(56)M(56)DPNHFL	0	0	2		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	A375_MHC_IP_R2	2	562.6317749023438	2	562.230984	1122.44742	-0.67539	-0.00037973	0.87805	0.00049367	0.20265	0.00011394	562.2317470466825	45.004	0.71359	45.773	45.441	46.154	0.7691					34	13	4	0	0	0	0.073067	1	16789	16789		55.503	17.529	1	6874700			50551	1082	36775	37069	49358	49358		11;12			-0.10891016819573451
SMMDPNHFL	9	Oxidation (M)	_SM(Oxidation (M))MDPNHFL_		SM(0.972)M(0.028)DPNHFL		SM(15)M(-15)DPNHFL	0	0	1		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	A375_MHC_IP_R1	1	554.6336059570312	2	554.233527	1106.4525	-0.67953	-0.00037662	0.78229	0.00043357	0.10276	5.6954E-05	554.2341160184861	65.591	1.1691	65.591	64.903	66.072	0					32	22	2	0	0	0	0.062639	1	23741	23741		59.368	40.111	2	3790100			50552	1082	36775	37070	49359	49359		11;12			-0.0964671295696462
SMMDPNHFL	9	Unmodified	_SMMDPNHFL_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6353759765625	2	546.23607	1090.45759	-0.74127	-0.00040491	0.58952	0.00032202	-0.15175	-8.2891E-05	546.236272035325	85.789	0.55843	85.789	85.513	86.072	0					21	10	3	0	0	0	0.16676	1	31450	31450		41.84	27.258	1	3323100			50553	1082	36775	37071	49360	49360					-0.08402409094333052
SMPDEFDL	8	Unmodified	_SMPDEFDL_					0	0	0			REV__tr|U7SV25|U7SV25_FUSNUBiotinbiosynthesisproteinBioCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01102PE=4SV=1	REV__tr|U7SV25|U7SV25_FUSNUBiotinbiosynthesisproteinBioCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01102PE=4SV=1	MSMS	A375_MHC_IP_R2	2	477.1618957519531	2	477.199676	952.384799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.52	1	85.256	84.756	85.756	0.73601								0	0	0	0.16876	1	32130	32130		14.582	4.3983	1		+		50554	28579	36776	37072	49361	49361					-0.09329839616111713
SMPDEFDL	8	Unmodified	_SMPDEFDL_					0	0	0			REV__tr|U7SV25|U7SV25_FUSNUBiotinbiosynthesisproteinBioCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01102PE=4SV=1	REV__tr|U7SV25|U7SV25_FUSNUBiotinbiosynthesisproteinBioCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01102PE=4SV=1	MSMS	A375_MHC_IP_R2	2	477.1619873046875	2	477.199676	952.384799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.641	1	86.377	85.877	86.877	0.73601								0	0	0	0.16876	1	32561	32561		14.582	5.2343	1		+		50555	28579	36776	37072	49362	49362					-0.09329839616111713
SMPDFDLHL	9	Oxidation (M)	_SM(Oxidation (M))PDFDLHL_		SM(1)PDFDLHL		SM(48)PDFDLHL	0	0	1		AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.P2986Afs*6|1|0.42|ENSG00000124942|chr11:62525462-62525463|-/A|frameshift_variant;AHNAK|p.F4329Lfs*50|1|0.43|ENSG00000124942|chr11:62521430-62521430|G/-|frameshift_variant;AHNAK|p.M4461Afs*2|1|0.03|ENSG00000124942|chr11:62521035-62521036|AT/-|frameshift_variant	AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	545.7015380859375	2	545.747324	1089.4801	-0.58498	-0.00031925	-0.10464	-5.7105E-05	-0.68962	-0.00037636	545.7472744891616	87.515	1.2699	87.515	86.73	88	0					45	24	4	0	0	0	0.11296	1	32121	32121		48.346	30.199	1	14927000			50556	87	36777	37073	49363	49363		0			-0.06106486425073854
SMPDFDLHL	9	Unmodified	_SMPDFDLHL_					0	0	0		AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.P2986Afs*6|1|0.42|ENSG00000124942|chr11:62525462-62525463|-/A|frameshift_variant;AHNAK|p.F4329Lfs*50|1|0.43|ENSG00000124942|chr11:62521430-62521430|G/-|frameshift_variant;AHNAK|p.M4461Afs*2|1|0.03|ENSG00000124942|chr11:62521035-62521036|AT/-|frameshift_variant	AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	538.149169921875	2	537.749867	1073.48518	-0.51888	-0.00027903	0.44277	0.0002381	-0.076109	-4.0928E-05	537.7499699805768	106.24	1.0727	106.24	105.81	106.88	0					58	20	4	0	0	0	0.43707	1	39111	39111		28.487	11.545	1	17620000			50557	87	36777	37074	49364	49364					-0.04862182562465023
SMPDFDLHL	9	Unmodified	_SMPDFDLHL_					0	0	0		AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.P2986Afs*6|1|0.42|ENSG00000124942|chr11:62525462-62525463|-/A|frameshift_variant;AHNAK|p.F4329Lfs*50|1|0.43|ENSG00000124942|chr11:62521430-62521430|G/-|frameshift_variant;AHNAK|p.M4461Afs*2|1|0.03|ENSG00000124942|chr11:62521035-62521036|AT/-|frameshift_variant	AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	AHNAK|p.K5831Ifs*4|1|0.07|ENSG00000124942|chr11:62516913-62516925|TGACCTTTGCTCT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	538.1494140625	2	537.749867	1073.48518	-0.84447	-0.00045411	0.28304	0.00015221	-0.56143	-0.00030191	537.7499540295624	105.45	1.1705	106.21	105.77	106.94	0.76232					64	22	4	0	0	0	0.3607	1	39808	39808		34.102	21.571	1	18596000			50558	87	36777	37074	49365	49365					-0.04862182562465023
SMSADVPLV	9	Oxidation (M)	_SM(Oxidation (M))SADVPLV_		SM(1)SADVPLV		SM(85)SADVPLV	0	0	1		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	A375_MHC_IP_R1	1	468.13116455078125	2	467.731143	933.447733	-0.21961	-0.00010272	-0.16195	-7.5749E-05	-0.38156	-0.00017847	467.7310285029903	70.556	1.3305	70.556	70.135	71.465	0					57	25	3	0	0	0	0.018481	2	25763	25754;25763		85.357	44.908	1	26856000			50559	4431	36778	37075	49366;49367	49367		232			-0.0216527382805225
SMSADVPLV	9	Oxidation (M)	_SM(Oxidation (M))SADVPLV_		SM(1)SADVPLV		SM(85)SADVPLV	0	0	1		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	A375_MHC_IP_R1	1	468.13067626953125	2	467.731143	933.447733	-0.29874	-0.00013973	0.11758	5.4998E-05	-0.18115	-8.4732E-05	467.73100802290037	73.75	3.8459	73.75	72.93	76.776	0					123	75	3	0	0	0	0.018481	3	27152	26732;27152;27369		85.357	38.436	1	4131400			50560	4431	36778	37075	49368;49369;49370	49369		232			-0.0216527382805225
SMSADVPLV	9	Oxidation (M)	_SM(Oxidation (M))SADVPLV_		SM(1)SADVPLV		SM(130)SADVPLV	0	0	1		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	A375_MHC_IP_R1	1	934.5919799804688	1	934.45501	933.447733	-0.03447	-3.221E-05	-0.23853	-0.0002229	-0.273	-0.00025511	934.4547637125551	73.751	4.9148	73.751	72.98	77.895	0					165	96	3	0	0	0	0.010057	1	27008	27008		125.62	83.53	1	10182000			50561	4431	36778	37075	49371	49371		232			-0.0216527382805225
SMSADVPLV	9	Oxidation (M)	_SM(Oxidation (M))SADVPLV_		SM(1)SADVPLV		SM(67)SADVPLV	0	0	1		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	A375_MHC_IP_R1	1	468.1309814453125	2	467.731143	933.447733	-0.44247	-0.00020696	0.5907	0.00027629	0.14823	6.9334E-05	467.73122386093036	90.227	0.55711	90.227	89.931	90.488	0					17	10	2	0	0	0	0.042197	1	33138	33138		67.344	35.227	1	2179900			50562	4431	36778	37075	49372	49372		232			-0.0216527382805225
SMSADVPLV	9	Oxidation (M)	_SM(Oxidation (M))SADVPLV_		SM(1)SADVPLV		SM(110)SADVPLV	0	0	1		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	A375_MHC_IP_R2	2	467.6625061035156	2	467.731143	933.447733	-0.55172	-0.00025806	0.12893	6.0304E-05	-0.4228	-0.00019775	467.7311845544376	69.743	1.4214	70.477	70.031	71.453	0.73421					59	27	3	0	0	0	0.0096264	2	26504	26504;26548		109.63	59.96	1	39505000			50563	4431	36778	37075	49373;49374	49373		232			-0.0216527382805225
SMSADVPLV	9	Oxidation (M)	_SM(Oxidation (M))SADVPLV_		SM(1)SADVPLV		SM(100)SADVPLV	0	0	1		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	A375_MHC_IP_R2	2	934.3031616210938	1	934.45501	933.447733	-0.24666	-0.00023049	0.035122	3.2819E-05	-0.21154	-0.00019767	934.4548094736065	73.356	4.3224	74.092	72.922	77.245	0.7354					142	84	3	0	0	0	0.0093345	2	27886	27886;28464		104.8	62.705	1	7828100			50564	4431	36778	37075	49375;49376	49375		232			-0.0216527382805225
SMSADVPLV	9	Oxidation (M)	_SM(Oxidation (M))SADVPLV_		SM(1)SADVPLV		SM(42)SADVPLV	0	0	1		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	A375_MHC_IP_R2	2	468.1305236816406	2	467.731143	933.447733	-0.63119	-0.00029523	0.33619	0.00015724	-0.29501	-0.00013798	467.7311587449398	73.177	4.8275	73.912	73.022	77.85	0.7354					130	94	2	0	0	0	0.1478	1	28268	28268		42.095	15.211	1	4046000			50565	4431	36778	37075	49377	49377		232			-0.0216527382805225
SMSADVPLV	9	Oxidation (M)	_SM(Oxidation (M))SADVPLV_		SM(1)SADVPLV		SM(85)SADVPLV	0	0	1		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	A375_MHC_IP_R2	2	468.1308898925781	2	467.731143	933.447733	-0.54473	-0.00025479	0.43787	0.00020481	-0.10685	-4.9978E-05	467.7311738108999	89.479	0.60567	90.211	89.836	90.442	0.7318					21	11	2	0	0	0	0.018481	1	34021	34021		85.357	40.95	1	3162600			50566	4431	36778	37075	49378	49378		232			-0.0216527382805225
SMSADVPLV	9	Unmodified	_SMSADVPLV_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	A375_MHC_IP_R1	1	918.85986328125	1	918.460095	917.452819	-0.24227	-0.00022252	0.12296	0.00011294	-0.11931	-0.00010958	918.4603963550861	90.21	1.2677	90.21	89.78	91.048	0					60	24	4	0	0	0	0.13491	1	33370	33370		44.407	12.29	1	68009000			50567	4431	36778	37076	49379	49379					-0.00920969965443419
SMSADVPLV	9	Unmodified	_SMSADVPLV_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-SECPEP	A375_MHC_IP_R2	2	460.1336364746094	2	459.733686	917.452819	-0.3165	-0.0001455	0.18086	8.3146E-05	-0.13564	-6.2358E-05	459.73370549261443	89.427	0.91276	90.159	89.786	90.699	0.7318					36	17	4	0	0	0	0.054184	1	33988	33988		50.855	0	1	5824100			50568	4431	36778	37076	49380	49380					-0.00920969965443419
SMSADVPLV	9	Unmodified	_SMSADVPLV_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MATCH	A375_MHC_IP_R2	2		1	918.460095	917.452819	-0.24884	-0.00022855	-0.024706	-2.2691E-05	-0.27355	-0.00025124	918.4602458198227	89.428	1.3708	90.159	89.735	91.106	0.7318	-0.025186	-7.9825E-05	NaN	44.407	63	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68737000			50569	4431	36778	37076							-0.00920969965443419
SMSARVLLL	9	Unmodified	_SMSARVLLL_					0	0	0		ENST00000506102.5_1_3:125725861-125741959:-|nuORF;ENST00000512557.5_1_3:125725252-125741959:-|nuORF;nc|ENSG00000114544|Q96GZ6-8|SLC41A3;nc|ENSG00000114544|Q96GZ6-6|SLC41A3;nc|ENSG00000114544|Q96GZ6-7|SLC41A3;nc|ENSG00000114544|Q96GZ6-4|SLC41A3;nc|ENSG00000114544|Q96GZ6-3|SLC41A3;nc|ENSG00000114544|Q96GZ6-5|SLC41A3;ENSG00000114544|ENST00000360370|SLC41A3;nc|ENSG00000114544|Q96GZ6-2|SLC41A3;nc|ENSG00000114544|Q96GZ6|SLC41A3	ENST00000506102.5_1_3:125725861-125741959:-|nuORF	ENST00000506102.5_1_3:125725861-125741959:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	495.9445495605469	2	495.294245	988.573937	-0.28522	-0.00014127	-4.3419	-0.0021505	-4.6271	-0.0022918	495.29175881595404	141.8	0.55768	141.83	141.52	142.08	0.030731					14	10	2	0	0	0	0.80005	1	55427	55427		2.0598	0	1	1413600			50570	3229	36779	37077	49381	49381					0.07919277467874508
SMSGPLIGV	9	Oxidation (M)	_SM(Oxidation (M))SGPLIGV_		SM(1)SGPLIGV		SM(74)SGPLIGV	0	0	1		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-MSMS	A375_MHC_IP_R1	1	876.849365234375	1	876.44953	875.442254	-0.25277	-0.00022154	-0.36311	-0.00031825	-0.61588	-0.00053978	876.4491651579657	77.176	2.2364	77.176	76.622	78.859	0					72	43	2	0	0	0	0.03063	1	28261	28261		74.423	44.198	1	3832000			50571	4710	36780	37078	49382	49382		249			-0.00044952619862215215
SMSGPLIGV	9	Oxidation (M)	_SM(Oxidation (M))SGPLIGV_		SM(1)SGPLIGV		SM(85)SGPLIGV	0	0	1		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-SECPEP	A375_MHC_IP_R1	1	439.1281433105469	2	438.728403	875.442254	-0.12585	-5.5215E-05	-0.086298	-3.7862E-05	-0.21215	-9.3076E-05	438.72833486602576	74.729	0.71053	74.729	74.4	75.11	0					30	13	3	0	0	0	0.050875	1	27170	27170		85.357	31.781	1	6789100			50572	4710	36780	37078	49383	49383		249			-0.00044952619862215215
SMSGPLIGV	9	Oxidation (M)	_SM(Oxidation (M))SGPLIGV_		SM(1)SGPLIGV		SM(48)SGPLIGV	0	0	1		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-MSMS	A375_MHC_IP_R2	2	876.8492431640625	1	876.44953	875.442254	-0.54295	-0.00047587	-0.10246	-8.9798E-05	-0.64541	-0.00056567	876.4494712096073	77.068	2.1344	77.811	76.795	78.929	0.74293					69	41	2	0	0	0	0.11296	1	29554	29554		48.346	14.243	1	4063300			50573	4710	36780	37078	49384	49384		249			-0.00044952619862215215
SMSGPLIGV	9	Oxidation (M)	_SM(Oxidation (M))SGPLIGV_		SM(1)SGPLIGV		SM(85)SGPLIGV	0	0	1		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-SECPEP	A375_MHC_IP_R2	2	439.1280212402344	2	438.728403	875.442254	-0.29161	-0.00012794	-0.15171	-6.6559E-05	-0.44332	-0.0001945	438.7284365214042	73.881	0.91648	74.618	74.143	75.06	0.73752					43	17	4	0	0	0	0.050875	1	27991	27991		85.357	24.967	1	8283100			50574	4710	36780	37078	49385	49385		249			-0.00044952619862215215
SMSRAQSPPVP	11	Unmodified	_SMSRAQSPPVP_					0	0	0		nc|ENSG00000104218|Q1MSJ5-1|CSPP1;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1;ENST00000521168.5_1_8:68070723-68107652:+|nuORF;nc|ENSG00000104218|Q1MSJ5-2|CSPP1	nc|ENSG00000104218|Q1MSJ5-1|CSPP1	nc|ENSG00000104218|Q1MSJ5-1|CSPP1	MULTI-SECPEP	A375_MHC_IP_R1	1	578.6363525390625	2	578.792598	1155.57064	-0.39181	-0.00022678	3.4049	0.0019707	3.0131	0.001744	579.2960342795783	84.366	0.55891	84.366	84.241	84.8	0					16	10	2	0	0	0	0.99018	1	30945	30945		11.495	1.4208	1	2243500			50575	2491	36781	37079	49386	49386					-0.0009201737680086808
SMTEEYRVP	9	Unmodified	_SMTEEYRVP_					0	0	0		nc|ENSG00000088247|Q92945|KHSRP;ENSG00000088247|ENST00000600480|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	MULTI-SECPEP	A375_MHC_IP_R1	1	371.5744934082031	3	371.174463	1110.50156	0.063168	2.3446E-05	0.20144	7.4771E-05	0.26461	9.8217E-05	371.174542946297	39.74	0.4569	39.74	39.491	39.948	0					13	8	2	0	0	0	0.81254	1	13639	13639		0.23584	0	1	2649400			50576	1886	36782	37080	49387	49387					-0.0492710139637893
SMTEEYRVP	9	Unmodified	_SMTEEYRVP_					0	0	0		nc|ENSG00000088247|Q92945|KHSRP;ENSG00000088247|ENST00000600480|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	MULTI-SECPEP	A375_MHC_IP_R2	2	371.5743103027344	3	371.174463	1110.50156	0.16496	6.1228E-05	-0.24711	-9.1719E-05	-0.082148	-3.0491E-05	371.17433586835364	38.954	0.56387	39.728	39.401	39.965	0.77451					22	10	3	0	0	0	0.81254	1	14381	14381		0.23584	0	1	3075400			50577	1886	36782	37080	49388	49388					-0.0492710139637893
SMVDVVMLL	9	Unmodified	_SMVDVVMLL_					0	0	0		nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6;ENST00000462875.1_1_6:31609234-31609708:-|nuORF	nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-4|BAG6	MULTI-SECPEP	A375_MHC_IP_R1	1	504.1689453125	2	503.769214	1005.52388	-0.64942	-0.00032716	0.0021974	1.107E-06	-0.64722	-0.00032605	503.76925581675056	134.7	0.25418	134.7	134.57	134.83	0					7	4	2	0	0	0	0.43707	1	51975	51975		28.487	11.545	1	2790100			50578	9446	36783	37081	49389	49389					0.021334067477255303
SMVYVMLEY	9	Unmodified	_SMVYVMLEY_					0	0	0			REV__OR2AG1|p.G203S|1|0.25|ENSG00000279486|chr11:6785644-6785644|G/A|missense_variant	REV__OR2AG1|p.G203S|1|0.25|ENSG00000279486|chr11:6785644-6785644|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	567.7280883789062	2	567.764129	1133.5137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.501	1	39.276	38.776	39.776	0.77451								0	0	0	0.15486	1	14176	14176		12.532	0	1		+		50579	27658	36784	37082	49390	49390					-0.04771200977529588
SMYDKVLML	9	Unmodified	_SMYDKVLML_					0	0	0		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5;GTF3C5|p.P154L|1|0.24|ENSG00000148308|chr9:133043815-133043815|C/T|missense_variant;ENST00000485692.1_1_9:135919116-135919314:+|nuORF	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-MSMS	A375_MHC_IP_R1	1	550.679443359375	2	550.279946	1098.54534	-0.51309	-0.00028234	-1.6074	-0.00088453	-2.1205	-0.0011669	550.2782985341757	100.58	1.8719	100.58	99.774	101.65	0					47	36	3	0	0	0	0.12748	1	36990	36990		45.74	21.719	1	2281900			50580	5730	36785	37083	49391	49391					7.91776415098866E-06
SMYDKVLML	9	Unmodified	_SMYDKVLML_					0	0	0		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5;GTF3C5|p.P154L|1|0.24|ENSG00000148308|chr9:133043815-133043815|C/T|missense_variant;ENST00000485692.1_1_9:135919116-135919314:+|nuORF	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6785888671875	2	550.279946	1098.54534	-0.53921	-0.00029671	-1.8142	-0.00099832	-2.3534	-0.001295	550.2784379705756	99.819	1.3764	100.58	99.861	101.24	0.76278					30	26	2	0	0	0	0.33896	1	37855	37855		47.594	28.337	1	1932500			50581	5730	36785	37083	49392	49392					7.91776415098866E-06
SMYDKVLML	9	Oxidation (M)	_SMYDKVLM(Oxidation (M))L_		SMYDKVLM(1)L		SM(-48)YDKVLM(48)L	0	0	1		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5;GTF3C5|p.P154L|1|0.24|ENSG00000148308|chr9:133043815-133043815|C/T|missense_variant;ENST00000485692.1_1_9:135919116-135919314:+|nuORF	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-SECPEP	A375_MHC_IP_R2	2	558.6769409179688	2	558.277403	1114.54025	-0.63402	-0.00035396	0.4642	0.00025915	-0.16982	-9.4808E-05	558.2776106056824	89.839	0.4116	90.571	90.287	90.699	0.7318					13	7	2	0	0	0	0.30925	1	34177	34177		49.554	17.249	2	2117600			50582	5730	36785	37084	49393	49393		308			-0.012435120862164695
SMYGVDLHHA	10	Unmodified	_SMYGVDLHHA_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000082397|Q9Y2J2-3|EPB41L3;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000578432.2_1_18:5429333-5433551:-|nuORF;ENST00000581757.1_1_18:5431369-5434107:-|nuORF;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;ENSG00000088367|ENST00000338074|EPB41L1	nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000088367|Q9H4G0-4|EPB41L1	nc|ENSG00000079819|O43491-3|EPB41L2	MULTI-SECPEP	A375_MHC_IP_R1	1	376.9804382324219	3	377.174686	1128.50223	0.43401	0.0001637	-0.059981	-2.2623E-05	0.37403	0.00014107	377.174675259841	39.294	0.30502	39.294	39.136	39.441	0					10	5	2	0	0	0	0.72086	1	13420	13420		11.518	10.82	1	2604500			50583	1704;1890	36786	37085	49394	49394					-0.05688261956652241
SMYGVDLHHA	10	Unmodified	_SMYGVDLHHA_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000082397|Q9Y2J2-3|EPB41L3;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000578432.2_1_18:5429333-5433551:-|nuORF;ENST00000581757.1_1_18:5431369-5434107:-|nuORF;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;ENSG00000088367|ENST00000338074|EPB41L1	nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000088367|Q9H4G0-4|EPB41L1	nc|ENSG00000079819|O43491-3|EPB41L2	MULTI-SECPEP	A375_MHC_IP_R2	2	377.5747985839844	3	377.174686	1128.50223	-0.18341	-6.9178E-05	0.14601	5.5073E-05	-0.037398	-1.4106E-05	377.17468714781415	38.564	0.35453	39.338	39.098	39.453	0.77451					15	6	3	0	0	0	0.78945	1	14225	14225		16.566	16.566	1	3023100			50584	1704;1890	36786	37085	49395	49395					-0.05688261956652241
SNAETNPA	8	Unmodified	_SNAETNPA_					0	0	0			REV__KIF20B|p.E1695Gfs*11|1|0.6|ENSG00000138182|chr10:89768376-89768377|-/A|frameshift_variant	REV__KIF20B|p.E1695Gfs*11|1|0.6|ENSG00000138182|chr10:89768376-89768377|-/A|frameshift_variant	MSMS	A375_MHC_IP_R1	1	402.15283203125	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.89	1	129.89	129.39	130.39	0								0	0	0	0.16876	1	49968	49968		2.3027	0	1		+		50585	19074	36787	37086	49396	49396					-0.06336803855481321
SNAETNPA	8	Unmodified	_SNAETNPA_					0	0	0			REV__KIF20B|p.E1695Gfs*11|1|0.6|ENSG00000138182|chr10:89768376-89768377|-/A|frameshift_variant	REV__KIF20B|p.E1695Gfs*11|1|0.6|ENSG00000138182|chr10:89768376-89768377|-/A|frameshift_variant	MSMS	A375_MHC_IP_R2	2	402.15240478515625	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.48	1	129.72	129.22	130.22	0.23946								0	0	0	0.16876	1	50884	50884		2.3027	0	1		+		50586	19074	36787	37086	49397	49397					-0.06336803855481321
SNAPLVNVTLY	11	Unmodified	_SNAPLVNVTLY_					0	0	0		ENSG00000216490|ENST00000407280|IFI30;ENST00000600463.1_1_19:18285864-18288180:+|nuORF	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-SECPEP	A375_MHC_IP_R2	2	595.6464233398438	2	595.824421	1189.63429	-0.86795	-0.00051714	0.131	7.8052E-05	-0.73695	-0.00043909	595.824411746384	58.36	0.60971	59.109	58.779	59.389	0.74894					23	11	3	0	0	0	0.9836	1	22108	22108		11.495	6.5977	1	5869600			50587	9651	36788	37087	49398	49398					0.04705666331960856
SNDKVPRVT	9	Unmodified	_SNDKVPRVT_					0	0	0			REV__nc|ENSG00000138802|O95487-2|SEC24B	REV__nc|ENSG00000138802|O95487-2|SEC24B	MULTI-SECPEP	A375_MHC_IP_R1	1	508.12890625	2	508.28018	1014.54581	-0.50503	-0.0002567	-3.9735	-0.0020196	-4.4785	-0.0022763	508.2781689392114	65.327	0.81356	65.327	64.7	65.514	0					29	15	3	0	0	0	0.4261	1	23608	23608		18.146	2.2992	1	1429400	+		50588	19125	36789	37088	49399	49399					0.03911670812135526
SNDSVPKEF	9	Unmodified	_SNDSVPKEF_					0	0	0			REV__ENST00000598479.1_1_19:52918345-52919989:+|nuORF	REV__ENST00000598479.1_1_19:52918345-52919989:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	512.1668090820312	2	511.743096	1021.47164	-0.49408	-0.00025284	0.066293	3.3925E-05	-0.42779	-0.00021892	511.74305135883054	64.352	0.253	64.352	64.191	64.444	0					6	4	2	0	0	0	0.55359	1	23294	23294		15.847	0	1	495050	+		50589	20773	36790	37089	49400	49400					-0.03823717070042676
SNEARDIWI	9	Unmodified	_SNEARDIWI_					0	0	0		nc|ENSG00000177675|Q9NR16-2|CD163L1;ENSG00000177675|ENST00000313599|CD163L1;nc|ENSG00000177675|Q9NR16-4|CD163L1;nc|ENSG00000177675|Q9NR16-3|CD163L1	nc|ENSG00000177675|Q9NR16-2|CD163L1	nc|ENSG00000177675|Q9NR16-2|CD163L1	MULTI-SECPEP	A375_MHC_IP_R2	2	552.7901000976562	2	552.277638	1102.54072	-0.70816	-0.0003911	4.2851	0.0023666	3.5769	0.0019755	552.2800027694731	84.001	0.30917	84.741	84.559	84.868	0.73962					7	5	2	0	0	0	0.59098	1	31867	31867		16.149	4.5088	1	461670			50590	8100	36791	37090	49401	49401					-0.0064463305047866015
SNEESHKDAI	10	Unmodified	_SNEESHKDAI_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2;REV__FSIP2|p.T6548Lfs*12|1|0.3|ENSG00000188738|chr2:185808944-185808944|A/-|frameshift_variant	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	564.6641235351562	2	565.259642	1128.50473	-0.62479	-0.00035317	2.426	0.0013713	1.8012	0.0010181	565.2614724510212	32.51	0.50394	32.51	32.231	32.734	0					13	9	2	0	0	0	0.90144	1	10411	10411		13.615	8.7179	1	1901200	+		50591	22110;26655	36792	37091	49402	49402					-0.054381350179937726
SNEGCVRHLTP	11	Unmodified	_SNEGCVRHLTP_					0	0	0			REV__ENSG00000156886|ENST00000389202|ITGAD	REV__ENSG00000156886|ENST00000389202|ITGAD	MULTI-MSMS	A375_MHC_IP_R1	1	607.884033203125	2	606.793129	1211.5717	-0.21391	-0.0001298	-0.41347	-0.00025089	-0.62738	-0.00038069	606.7926632083166	88.587	0.61116	88.587	88.358	88.97	0					31	11	3	0	0	0	0.73135	1	32601	32601		7.609	1.8771	1	8662200	+		50592	19999	36793	37092	49403	49403					-0.025618030078931042
SNEGPEQK	8	Unmodified	_SNEGPEQK_					0	0	0			REV__ENST00000517973.1_1_5:150400193-150407688:+|nuORF	REV__ENST00000517973.1_1_5:150400193-150407688:+|nuORF	MSMS	A375_MHC_IP_R1	1	444.65093994140625	2	444.706514	887.398475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.442	1	27.442	26.942	27.942	0								0	0	0	0.16876	1	8326	8326		12.532	4.6214	1		+		50593	22601	36794	37093	49404	49404					-0.04972845792667613
SNEGSIELTW	10	Unmodified	_SNEGSIELTW_					0	0	0			REV__ENST00000442815.1_1_21:44781197-44781521:-|nuORF	REV__ENST00000442815.1_1_21:44781197-44781521:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	567.6785888671875	2	568.266936	1134.51932	-0.3477	-0.00019759	-0.38487	-0.00021871	-0.73257	-0.0004163	568.2665498201981	70.593	0.3539	71.327	71.149	71.503	0.73421					11	6	2	0	0	0	0.45919	1	26784	26784		30.637	6.616	1	3372100	+		50594	24819	36795	37094	49405	49405					-0.04256062869876587
SNEIGEIYY	9	Unmodified	_SNEIGEIYY_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	A375_MHC_IP_R1	1	544.6683349609375	2	544.250754	1086.48696	-0.8235	-0.00044819	0.33382	0.00018168	-0.48968	-0.00026651	544.2506739582309	90.84	0.45801	90.84	90.539	90.997	0					17	8	3	0	0	0	0.38603	2	33366	33366;33415		25.399	1.293	1	1376000	+		50595	22333	36796	37095	49406;49407	49406					-0.05282850272851647
SNEIGEIYY	9	Unmodified	_SNEIGEIYY_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	A375_MHC_IP_R2	2	544.6690063476562	2	544.250754	1086.48696	-0.71032	-0.00038659	1.3611	0.00074078	0.65079	0.00035419	544.2508587154047	90.159	0.66051	90.891	90.699	91.359	0.7318					20	12	3	0	0	0	0.38603	2	34286	34286;34368		25.399	0	1	1715300	+		50596	22333	36796	37095	49408;49409	49408					-0.05282850272851647
SNEIGEIYY	9	Unmodified	_SNEIGEIYY_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	544.250754	1086.48696	-0.8235	-0.00044819	0.33382	0.00018168	-0.48968	-0.00026651	544.2506739582309	90.84	0.45801	90.84	90.539	90.997	0	-0.025668	-0.0001513	NaN	25.399	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1376000	+		50597	22333	36796	37095							-0.05282850272851647
SNEILIFSV	9	Unmodified	_SNEILIFSV_					0	0	0		ENSG00000165516|ENST00000298307|KLHDC2;ENST00000554115.5_1_14:50249154-50249313:+|nuORF	ENSG00000165516|ENST00000298307|KLHDC2	ENSG00000165516|ENST00000298307|KLHDC2	MULTI-SECPEP	A375_MHC_IP_R2	2	511.6689758300781	2	511.281857	1020.54916	-0.94161	-0.00048143	-0.71805	-0.00036712	-1.6597	-0.00084855	511.2816709015297	65.953	1.0696	66.691	66.222	67.292	0.73812					22	20	2	0	0	0	0.65246	1	24828	24828		10.824	0	1	1131300			50598	6962	36797	37096	49410	49410					0.03970920866152028
SNELKSEVTY	10	Unmodified	_SNELKSEVTY_					0	0	0			REV__ENST00000313334.12_1_1:52552599-52552851:+|nuORF	REV__ENST00000313334.12_1_1:52552599-52552851:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	585.687255859375	2	585.287868	1168.56118	-0.69519	-0.00040689	-0.21762	-0.00012737	-0.91281	-0.00053426	585.2877273147924	26.89	0.56286	27.55	27.262	27.825	0.65992					20	10	3	0	0	0	0.74754	1	9138	9138		29.082	6.3453	1	6990700	+		50599	23518	36798	37097	49411	49411					-0.01635507181322282
SNEPENRVL	9	Unmodified	_SNEPENRVL_					0	0	0		ENSG00000152503|ENST00000513154|TRIM36;nc|ENSG00000152503|Q9NQ86|TRIM36	ENSG00000152503|ENST00000513154|TRIM36	ENSG00000152503|ENST00000513154|TRIM36	MSMS	A375_MHC_IP_R1	1	529.1876220703125	2	529.26727	1056.51999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.79	1	54.79	54.29	55.29	0								0	0	0	0.13673	1	19578	19578		30.637	11.38	1				50600	5970	36799	37098	49412	49412					-0.006012234301579156
SNGCINYEAF	10	Unmodified	_SNGCINYEAF_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548548.1_1_12:56551205-56551507:+|nuORF;nc|ENSG00000168530|P05976-2|MYL1;ENST00000549178.5_1_12:56548807-56551507:+|nuORF;ENSG00000168530|ENST00000352451|MYL1;ENSG00000160808|ENST00000292327|MYL3;ENSG00000196465|ENST00000695999|MYL6B	ENSG00000092841|ENST00000550697|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	A375_MHC_IP_R1	1	560.6986083984375	2	559.234581	1116.45461	-0.47308	-0.00026456	-0.12826	-7.1725E-05	-0.60134	-0.00033629	559.2346171881902	33.526	0.75832	33.526	33.04	33.798	0					42	14	5	0	0	0	0.71245	1	10983	10983		6.7232	0.96273	1	21626000			50601	2012	36800	37099	49413	49413					-0.09895960947505955
SNGESDCFNL	10	Unmodified	_SNGESDCFNL_					0	0	0		ENST00000452157.5_1_5:56218957-56234137:-|nuORF;nc|ENSG00000155545|Q7Z3K6-4|MIER3;nc|ENSG00000155545|Q7Z3K6-3|MIER3;ENSG00000155545|ENST00000381199|MIER3;nc|ENSG00000155545|Q7Z3K6-2|MIER3	ENST00000452157.5_1_5:56218957-56234137:-|nuORF	ENST00000452157.5_1_5:56218957-56234137:-|nuORF	MSMS	A375_MHC_IP_R2	2	543.2020263671875	2	543.213846	1084.41314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.284	1	84.024	83.524	84.524	0.73962								0	0	0	0.15435	1	31656	31656		6.7232	0	1				50602	6148	36801	37100	49414	49414					-0.12569141706831033
SNGGGGGGG	9	Unmodified	_SNGGGGGGG_					0	0	0		ARID1A|p.R1879Sfs*22|1|0.55|ENSG00000117713|chr1:26779531-26779532|-/T|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A	ARID1A|p.R1879Sfs*22|1|0.55|ENSG00000117713|chr1:26779531-26779532|-/T|frameshift_variant	ARID1A|p.R1879Sfs*22|1|0.55|ENSG00000117713|chr1:26779531-26779532|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	619.063232421875	1	619.243043	618.235767	-0.19553	-0.00012108	-3.0813	-0.0019081	-3.2768	-0.0020291	619.2405596979675	106.64	0.25419	106.64	106.47	106.73	0					6	4	2	0	0	0	0.81896	1	39165	39165		0	0	1	707530			50603	177	36802	37101	49415	49415					-0.08862184403994888
SNGYAGDWSS	10	Unmodified	_SNGYAGDWSS_					0	0	0		SYDE2|p.R1087G|1|0.32|ENSG00000097096|chr1:85159076-85159076|G/C|missense_variant	SYDE2|p.R1087G|1|0.32|ENSG00000097096|chr1:85159076-85159076|G/C|missense_variant	SYDE2|p.R1087G|1|0.32|ENSG00000097096|chr1:85159076-85159076|G/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	522.606689453125	2	522.206878	1042.3992	-0.66897	-0.00034934	-0.038952	-2.0341E-05	-0.70792	-0.00036968	522.206869101446	53.057	0.60712	53.057	52.694	53.301	0					25	11	3	0	0	0	0.6806	1	18883	18883		14.838	5.4551	1	3873300			50604	29278	36803	37102	49416	49416					-0.1203005114359712
SNGYAGDWSS	10	Unmodified	_SNGYAGDWSS_					0	0	0		SYDE2|p.R1087G|1|0.32|ENSG00000097096|chr1:85159076-85159076|G/C|missense_variant	SYDE2|p.R1087G|1|0.32|ENSG00000097096|chr1:85159076-85159076|G/C|missense_variant	SYDE2|p.R1087G|1|0.32|ENSG00000097096|chr1:85159076-85159076|G/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	522.6062622070312	2	522.206878	1042.3992	-1.0252	-0.00053539	0.06346	3.3139E-05	-0.96178	-0.00050225	522.2068140818591	52.399	0.60733	53.152	52.932	53.54	0.75225					22	11	3	0	0	0	0.6806	1	19762	19762		14.838	4.7643	1	2414300			50605	29278	36803	37102	49417	49417					-0.1203005114359712
SNHFERWP	8	Unmodified	_SNHFERWP_					0	0	0			REV__ENST00000433445.1_1_2:201981775-201994502:+|nuORF	REV__ENST00000433445.1_1_2:201981775-201994502:+|nuORF	MSMS	A375_MHC_IP_R1	1	536.7295532226562	2	536.75159	1071.48863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.335	1	40.335	39.835	40.835	0								0	0	0	0.16876	1	13852	13852		2.3027	0	1		+		50606	24730	36804	37103	49418	49418					-0.04425751673556988
SNHGGSSG	8	Unmodified	_SNHGGSSG_					0	0	0		nc|ENSG00000128283|Q00587-2|CDC42EP1;ENSG00000128283|ENST00000249014|CDC42EP1	nc|ENSG00000128283|Q00587-2|CDC42EP1	nc|ENSG00000128283|Q00587-2|CDC42EP1	MSMS	A375_MHC_IP_R1	1	351.5417785644531	2	351.643717	701.27288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.48	1	136.48	135.98	136.98	0								0	0	0	0.16876	1	52571	52571		0.69038	0	1				50607	4129	36805	37104	49419	49419					-0.0897051285822954
SNIFDNDQ	8	Unmodified	_SNIFDNDQ_					0	0	0			REV__tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	REV__tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	476.5983581542969	2	476.703971	951.393389	-0.56075	-0.00026731	-0.77199	-0.00036801	-1.3327	-0.00063532	476.70355293807927	61.305	0.51022	61.305	61.075	61.585	0					13	9	2	0	0	0	0.77643	2	22142	22047;22142		7.9102	1.187	1	1985800	+		50608	28539	36806	37105	49420;49421	49421					-0.08425149655283803
SNIKDNTLQM	10	Unmodified	_SNIKDNTLQM_					0	0	0			REV__nc|ENSG00000150760|Q14185|DOCK1	REV__nc|ENSG00000150760|Q14185|DOCK1	MULTI-SECPEP	A375_MHC_IP_R1	1	388.6059875488281	3	388.529017	1162.56522	0.07101	2.7589E-05	-0.50841	-0.00019753	-0.4374	-0.00016994	388.86419845000825	27.678	0.25223	27.678	27.482	27.735	0					5	4	2	0	0	0	0.87043	1	8384	8384		13.519	2.4534	1	804470	+		50609	19727	36807	37106	49422	49422					-0.00955740959261675
SNLLKAGF	8	Unmodified	_SNLLKAGF_					0	0	0		ENST00000478247.1_1_3:183882805-183888540:+|nuORF;nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3	ENST00000478247.1_1_3:183882805-183888540:+|nuORF	ENST00000478247.1_1_3:183882805-183888540:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	425.6449890136719	2	425.245078	848.475603	-0.096048	-4.0844E-05	0.027954	1.1887E-05	-0.068095	-2.8957E-05	425.24503777641553	46.22	0.60468	46.22	45.941	46.545	0					27	11	3	0	0	0	0.05463	1	16168	16168		141.83	52.923	1	13041000			50610	6466	36808	37107	49423	49423					0.04530417214334648
SNLLKAGF	8	Unmodified	_SNLLKAGF_					0	0	0		ENST00000478247.1_1_3:183882805-183888540:+|nuORF;nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3	ENST00000478247.1_1_3:183882805-183888540:+|nuORF	ENST00000478247.1_1_3:183882805-183888540:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	425.6451416015625	2	425.245078	848.475603	-0.22701	-9.6535E-05	0.01118	4.7541E-06	-0.21583	-9.1781E-05	425.24504478201516	45.359	0.80652	46.124	45.746	46.552	0.76519					33	15	3	0	0	0	0.01823	1	16895	16895		149.99	46.246	1	15224000			50611	6466	36808	37107	49424	49424					0.04530417214334648
SNLSGPAW	8	Unmodified	_SNLSGPAW_					0	0	0		LONRF2|p.P693L|1|0.33|ENSG00000170500|chr2:100284485-100284485|G/A|missense_variant	LONRF2|p.P693L|1|0.33|ENSG00000170500|chr2:100284485-100284485|G/A|missense_variant	LONRF2|p.P693L|1|0.33|ENSG00000170500|chr2:100284485-100284485|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	416.3163146972656	2	416.20341	830.392267	0.3881	0.00016153	-0.42591	-0.00017727	-0.037819	-1.574E-05	416.2031478077555	42.461	0.50551	42.461	42.132	42.638	0					12	9	2	0	0	0	0.97144	1	14709	14709		5.2307	0	1	2153400			50612	14310	36809	37108	49425	49425					-0.02971319233529357
SNLSIKYETAP	11	Unmodified	_SNLSIKYETAP_					0	0	0			REV__TNR|p.E930K|4|0.25|ENSG00000116147|chr1:175362729-175362729|C/T|missense_variant	REV__TNR|p.E930K|4|0.25|ENSG00000116147|chr1:175362729-175362729|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	612.2186889648438	2	611.819335	1221.62412	-0.73824	-0.00045167	0.2717	0.00016623	-0.46654	-0.00028544	611.8194561407372	34.989	0.60569	35.752	35.475	36.081	0.76338					20	11	3	0	0	0	0.52344	1	12675	12675		36.506	3.7205	1	5838400	+		50613	28145	36810	37109	49426	49426					0.022170586067204567
SNMKLWFKI	9	Unmodified	_SNMKLWFKI_					0	0	0			REV__KCNU1|p.E169K|1|0.33|ENSG00000215262|chr8:36806305-36806305|G/A|missense_variant	REV__KCNU1|p.E169K|1|0.33|ENSG00000215262|chr8:36806305-36806305|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	389.6180725097656	3	389.551205	1165.63179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.731	1	27.731	27.231	28.231	0								0	0	0	0.15486	1	8452	8452		6.6304	0.0069188	1		+		50614	26834	36811	37110	49427	49427					0.05559539393311752
SNMWVEAWETA	11	Unmodified	_SNMWVEAWETA_					0	0	0		nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	MULTI-MSMS	A375_MHC_IP_R2	2	442.13909912109375	3	441.860656	1322.56014	-0.51566	-0.00022785	0.10776	4.7616E-05	-0.4079	-0.00018023	441.8608660117048	35.852	0.25496	36.616	36.435	36.69	0.76338					9	4	3	0	0	0	0.7362	1	12959	12959		1.2148	0	1	862360			50615	3344	36812	37111	49428	49428					-0.08824044821903954
SNNYGGGG	8	Unmodified	_SNNYGGGG_					0	0	0			REV__nc|ENSG00000134644|Q14671-4|PUM1	REV__nc|ENSG00000134644|Q14671-4|PUM1	MULTI-SECPEP	A375_MHC_IP_R1	1	724.680419921875	1	725.284908	724.277631	-0.91792	-0.00066576	-0.67891	-0.0004924	-1.5968	-0.0011582	725.2844613578087	144.18	0.17105	144.18	144.08	144.25	0					5	3	2	0	0	0	0.972	1	55303	55303		0.79363	0.10326	1	1292000	+		50616	18792	36813	37112	49429	49429					-0.09553628715457307
SNPNYHHPPP	10	Unmodified	_SNPNYHHPPP_					0	0	0			REV__nc|ENSG00000105879|Q75N03-2|CBLL1	REV__nc|ENSG00000105879|Q75N03-2|CBLL1	MULTI-MSMS	A375_MHC_IP_R1	1	580.6669921875	2	580.267604	1158.52066	-0.23283	-0.0001351	1.2359	0.00071717	1.0031	0.00058206	580.2684424566479	52.361	0.86142	52.361	52.085	52.946	0					23	16	2	0	0	0	0.45919	1	18609	18609		30.637	4.3684	1	4123500	+		50617	17417	36814	37113	49430	49430					-0.05226383990452632
SNPNYHHPPP	10	Unmodified	_SNPNYHHPPP_					0	0	0			REV__nc|ENSG00000105879|Q75N03-2|CBLL1	REV__nc|ENSG00000105879|Q75N03-2|CBLL1	MULTI-SECPEP	A375_MHC_IP_R1	1	580.6669921875	2	580.267604	1158.52066	-0.23283	-0.0001351	1.2359	0.00071717	1.0031	0.00058206	580.2684424566479	52.361	0.86142	52.361	52.085	52.946	0					23	16	2	0	0	0	0.72086	1	18609	18609		30.637	6.8468	1	4123500	+		50618	17417	36814	37113	49431	49431					-0.05226383990452632
SNRRGFQGF	9	Unmodified	_SNRRGFQGF_					0	0	0			REV__chr13:60484757-60485799|433|15.34|0.9|4.09|+|ENST00000484389|TDRD3,TDRD3	REV__chr13:60484757-60485799|433|15.34|0.9|4.09|+|ENST00000484389|TDRD3,TDRD3	MSMS	A375_MHC_IP_R1	1	534.6810913085938	2	534.770314	1067.52608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.636	1	49.636	49.136	50.136	0								0	0	0	0.15486	1	17559	17559		10.074	1.4806	1		+		50619	15700	36815	37114	49432	49432					-0.00498660407947682
SNRVVADQY	9	Unmodified	_SNRVVADQY_					0	0	0		ENSG00000178031|ENST00000380548|ADAMTSL1;ENST00000546040.1_1_9:18657630-18684799:+|nuORF;nc|ENSG00000178031|Q8N6G6-2|ADAMTSL1;nc|ENSG00000178031|Q8N6G6-1|ADAMTSL1;nc|ENSG00000178031|Q8N6G6-4|ADAMTSL1	ENSG00000178031|ENST00000380548|ADAMTSL1	ENSG00000178031|ENST00000380548|ADAMTSL1	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1640014648438	2	526.261988	1050.50942	-0.58741	-0.00030913	-0.85849	-0.00045179	-1.4459	-0.00076092	526.2611695291776	36.231	0.35801	37.002	36.799	37.157	0.7709					12	6	3	0	0	0	0.5212	1	13125	13125		10.8	0	1	1559100			50620	8125	36816	37115	49433	49433					-0.01381206084556652
SNSDVIRQV	9	Unmodified	_SNSDVIRQV_					0	0	0		nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	MULTI-MSMS	A375_MHC_IP_R1	1	509.66949462890625	2	509.269813	1016.52507	-0.39532	-0.00020133	-0.043532	-2.217E-05	-0.43885	-0.0002235	509.2698133467451	31.473	0.96743	31.473	31.16	32.127	0					49	18	4	0	0	0	4.0711E-47	1	10058	10058		284.04	152.77	1	19438000			50621	3428	36817	37116	49434	49434					0.017470804324716482
SNSDVIRQV	9	Unmodified	_SNSDVIRQV_					0	0	0		nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	MULTI-MSMS	A375_MHC_IP_R2	2	509.6690979003906	2	509.269813	1016.52507	-0.77303	-0.00039368	0.080982	4.1242E-05	-0.69205	-0.00035244	509.26988699568216	30.827	0.8097	31.546	31.165	31.974	0.71857					46	15	4	0	0	0	3.4579000000000003E-35	1	10827	10827		266.8	174.31	1	22830000			50622	3428	36817	37116	49435	49435					0.017470804324716482
SNSFAKGF	8	Unmodified	_SNSFAKGF_					0	0	0		TBX20|p.P281S|1|0.19|ENSG00000164532|chr7:35231553-35231553|G/A|missense_variant	TBX20|p.P281S|1|0.19|ENSG00000164532|chr7:35231553-35231553|G/A|missense_variant	TBX20|p.P281S|1|0.19|ENSG00000164532|chr7:35231553-35231553|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	429.29095458984375	2	429.211235	856.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.056	1	21.675	21.175	22.175	0.61932								0	0	0	0.16876	1	6601	6601		3.9444	1.0552	1				50623	29310	36818	37117	49436	49436					-0.026030327164676237
SNSNRESEG	9	Unmodified	_SNSNRESEG_					0	0	0			REV__nc|ENSG00000198929|O75052-3|NOS1AP	REV__nc|ENSG00000198929|O75052-3|NOS1AP	MULTI-SECPEP	A375_MHC_IP_R1	1	979.5405883789062	1	979.407542	978.400266	-0.014674	-1.4372E-05	2.9775	0.0029162	2.9628	0.0029018	979.4101263308826	46.96	0.25555	46.96	46.799	47.055	0					6	4	2	0	0	0	0.80516	1	16527	16527		3.9444	0	1	1032500	+		50624	27451	36819	37118	49437	49437					-0.08979836774699379
SNSRKSKSP	9	Unmodified	_SNSRKSKSP_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;ENST00000470782.5_1_17:15935612-15971511:-|nuORF;ENST00000464381.5_1_17:15935612-15961439:-|nuORF	nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-SECPEP	A375_MHC_IP_R1	1	495.18218994140625	2	495.76998	989.525407	-0.81648	-0.00040478	-3.9611	-0.0019638	-4.7776	-0.0023686	495.76831950493886	29.53	0.30416	29.53	29.302	29.607	0					8	5	2	0	0	0	0.65527	1	9225	9225		17.113	2.2746	1	6032400			50625	5209	36820	37119	49438	49438					0.030225001523376704
SNSSHSEYSSF	11	Unmodified	_SNSSHSEYSSF_					0	0	0		nc|ENSG00000173706|Q9ULI3-2|HEG1;ENSG00000173706|ENST00000311127|HEG1	nc|ENSG00000173706|Q9ULI3-2|HEG1	nc|ENSG00000173706|Q9ULI3-2|HEG1	MULTI-MSMS	A375_MHC_IP_R2	2	616.6460571289062	2	616.246731	1230.47891	-0.887	-0.00054661	-0.34408	-0.00021204	-1.2311	-0.00075865	616.2465718362798	41.061	0.7091	41.835	41.489	42.198	0.77451					32	13	3	0	0	0	0.72649	2	15182	15182;15271		12.241	12.241	1	14083000			50626	7823	36821	37120	49439;49440	49439					-0.12711029260276518
SNTFQLSFD	9	Unmodified	_SNTFQLSFD_					0	0	0		ENST00000432471.6_2_8:38068046-38068208:+|nuORF	ENST00000432471.6_2_8:38068046-38068208:+|nuORF	ENST00000432471.6_2_8:38068046-38068208:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	529.7034301757812	2	529.743096	1057.47164	-0.57017	-0.00030204	-0.0058669	-3.1079E-06	-0.57604	-0.00030515	529.7430240613347	50.263	0.66502	50.263	49.998	50.663	0					29	12	3	0	0	0	0.51106	1	17699	17699		19.257	3.4098	1	4895700			50627	11878	36822	37121	49441	49441					-0.05479717070033985
SNTYGLDYV	9	Unmodified	_SNTYGLDYV_					0	0	0		ENSG00000212907|ENST00000361335|MT-ND4L	ENSG00000212907|ENST00000361335|MT-ND4L	ENSG00000212907|ENST00000361335|MT-ND4L	MULTI-MSMS	A375_MHC_IP_R1	1	517.2057495117188	2	516.237647	1030.46074	-0.75149	-0.00038795	-0.2517	-0.00012993	-1.0032	-0.00051788	516.2377256588502	39.627	0.50513	39.627	39.391	39.896	0					23	9	3	0	0	0	0.69674	1	13461	13461		7.2892	0	1	6072500			50628	9552	36823	37122	49442	49442					-0.053271194443368586
SNVDSLHEAT	10	Unmodified	_SNVDSLHEAT_					0	0	0			REV__ENSG00000138356|ENST00000374700|AOX1	REV__ENSG00000138356|ENST00000374700|AOX1	MSMS	A375_MHC_IP_R2	2	536.5646362304688	2	536.74891	1071.48327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.602	1	86.338	85.838	86.838	0.73601								0	0	0	0.15451	1	32546	32546		6.2058	0.44535	1		+		50629	19088	36824	37123	49443	49443					-0.049615200467314935
SNVEDEYPSFT	11	Unmodified	_SNVEDEYPSFT_					0	0	0			REV__ENSG00000198734|ENST00000367797|F5	REV__ENSG00000198734|ENST00000367797|F5	MULTI-MSMS	A375_MHC_IP_R1	1	644.6890869140625	2	644.272415	1286.53028	-0.34951	-0.00022518	-0.053311	-3.4347E-05	-0.40282	-0.00025952	644.2723367274002	43.427	1.376	43.427	42.942	44.318	0					81	26	5	0	0	0	0.4047	1	15090	15090		38.615	10.986	1	100740000	+		50630	22406	36825	37124	49444	49444					-0.10152705286236596
SNVKPTLP	8	Unmodified	_SNVKPTLP_					0	0	0		ENSG00000155530|ENST00000285928|LRGUK	ENSG00000155530|ENST00000285928|LRGUK	ENSG00000155530|ENST00000285928|LRGUK	MULTI-MSMS	A375_MHC_IP_R1	1	428.6509094238281	2	428.25036	854.486168	-0.49012	-0.00020989	1.3032	0.0005581	0.8131	0.00034821	428.25083209161807	143.61	0.53957	143.61	143.45	143.98	0					14	10	2	0	0	0	0.77797	1	55091	55091		2.3027	0.24298	1	3729500			50631	6146	36826	37125	49445	49445					0.053103998687561216
SNVSKQTEY	9	Unmodified	_SNVSKQTEY_					0	0	0		RGS22|p.R837Q|1|0.38|ENSG00000132554|chr8:100004043-100004043|C/T|missense_variant	RGS22|p.R837Q|1|0.38|ENSG00000132554|chr8:100004043-100004043|C/T|missense_variant	RGS22|p.R837Q|1|0.38|ENSG00000132554|chr8:100004043-100004043|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	528.1973266601562	2	528.253828	1054.4931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.756	1	28.756	28.256	29.256	0								0	0	0	0.14169	1	8914	8914		29.082	5.061	1				50632	29073	36827	37126	49446	49446					-0.03196332041329697
SNWKSLTSW	9	Unmodified	_SNWKSLTSW_					0	0	0		ZC3HAV1|p.P357S|1|0.53|ENSG00000105939|chr7:139079872-139079872|G/A|missense_variant	ZC3HAV1|p.P357S|1|0.53|ENSG00000105939|chr7:139079872-139079872|G/A|missense_variant	ZC3HAV1|p.P357S|1|0.53|ENSG00000105939|chr7:139079872-139079872|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	554.2009887695312	2	554.774731	1107.53491	-0.77091	-0.00042768	0.17679	9.8081E-05	-0.59412	-0.0003296	554.7747435910792	66.635	0.56074	66.635	66.275	66.836	0					29	10	4	0	0	0	0.53748	1	24145	24145		30.637	0	1	7949600			50633	30190	36828	37127	49447	49447					-0.014557315621459566
SNYLISVDP	9	Unmodified	_SNYLISVDP_					0	0	0		ENSG00000166402|ENST00000299506|TUB;nc|ENSG00000166402|P50607-2|TUB	ENSG00000166402|ENST00000299506|TUB	ENSG00000166402|ENST00000299506|TUB	MULTI-SECPEP	A375_MHC_IP_R2	2	503.6283874511719	2	504.25584	1006.49713	-0.61906	-0.00031217	-0.41304	-0.00020828	-1.0321	-0.00052044	504.2555607058931	63.556	0.91456	64.296	63.936	64.85	0.74022					28	17	3	0	0	0	0.60917	1	24037	24037		19.257	4.4187	1	1733400			50634	7070	36829	37128	49448	49448					-0.005862425476152566
SNYRKAFLSAF	11	Unmodified	_SNYRKAFLSAF_					0	0	0		ENSG00000185149|ENST00000329476|NPY2R	ENSG00000185149|ENST00000329476|NPY2R	ENSG00000185149|ENST00000329476|NPY2R	MULTI-MSMS	A375_MHC_IP_R1	1	653.2744140625	2	652.343312	1302.67207	-0.59761	-0.00038984	0.24384	0.00015907	-0.35377	-0.00023078	652.3433214674511	129.87	0.96526	129.87	129.4	130.36	0					27	18	3	0	0	0	0.73135	1	49893	49893		7.609	2.3121	1	5668900			50635	8645	36830	37129	49449	49449					0.03284177317414105
SPAKDLGL	8	Unmodified	_SPAKDLGL_					0	0	0			REV__ENSG00000184344|ENST00000329913|GDF3	REV__ENSG00000184344|ENST00000329913|GDF3	MULTI-SECPEP	A375_MHC_IP_R1	1	801.0238037109375	1	800.451245	799.443968	-0.263	-0.00021052	0.077687	6.2185E-05	-0.18531	-0.00014833	800.4511110441621	72.361	0.35447	72.361	72.22	72.575	0					10	6	2	0	0	0	0.87643	1	26295	26295		19.257	3.4098	1	1028800	+		50636	21809	36831	37130	49450	49450					0.03622424460365892
SPAKDLGL	8	Unmodified	_SPAKDLGL_					0	0	0			REV__ENSG00000184344|ENST00000329913|GDF3	REV__ENSG00000184344|ENST00000329913|GDF3	MULTI-MATCH	A375_MHC_IP_R2	2		1	800.451245	799.443968	-1.2181	-0.00097507	0.15295	0.00012243	-1.0652	-0.00085264	800.4518259045308	71.555	0.30331	72.289	72.111	72.414	0.73421	-0.035767	4.7726E-05	NaN	19.257	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1778200	+		50637	21809	36831	37130							0.03622424460365892
SPAQPQVWTRR	11	Unmodified	_SPAQPQVWTRR_					0	0	0			REV__ENST00000274606.7_1_5:177576796-177580513:-|nuORF	REV__ENST00000274606.7_1_5:177576796-177580513:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	442.6101989746094	3	442.573949	1324.70002	-0.1597	-7.0677E-05	-1.0276	-0.0004548	-1.1873	-0.00052548	442.90777817872043	37.02	0.4033	37.02	36.795	37.198	0					11	7	2	0	0	0	0.73472	1	12500	12500		4.4062	0.28952	1	1186600	+		50638	23291	36832	37131	49451	49451					0.05065500297496328
SPCEAGNDKS	10	Unmodified	_SPCEAGNDKS_					0	0	0		ENST00000584379.5_1_17:62291536-62291599:-|nuORF	ENST00000584379.5_1_17:62291536-62291599:-|nuORF	ENST00000584379.5_1_17:62291536-62291599:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	504.6557312011719	2	504.208563	1006.40257	-0.58467	-0.0002948	-3.8939	-0.0019633	-4.4786	-0.0022581	504.7066607997454	90.505	0.76308	90.505	90.133	90.896	0					25	14	2	0	0	0	0.62015	1	33360	33360		19.362	3.5148	1	1218100			50639	13704	36833	37132	49452	49452					-0.1003712436125852
SPDAKEFGE	9	Unmodified	_SPDAKEFGE_					0	0	0			REV__ENSG00000071242|ENST00000265678|RPS6KA2	REV__ENSG00000071242|ENST00000265678|RPS6KA2	MULTI-MSMS	A375_MHC_IP_R1	1	981.5189208984375	1	979.436717	978.429441	0.12518	0.0001226	-0.29812	-0.00029199	-0.17294	-0.00016939	979.4364447086601	31.895	1.9825	31.895	31.565	33.547	0					112	38	6	0	0	0	0.70886	1	10475	10475		6.2058	1.8765	1	795280000	+		50640	16586	36834	37133	49453	49453					-0.060636924784148505
SPDIRQIDLD	10	Unmodified	_SPDIRQIDLD_					0	0	0		ENSG00000148429|ENST00000609104|USP6NL;nc|ENSG00000148429|Q92738-2|USP6NL;chr10:11527567-11532178|412|14.69|0.4|5.19|-|ENST00000277575|USP6NL,USP6NL	ENSG00000148429|ENST00000609104|USP6NL	ENSG00000148429|ENST00000609104|USP6NL	MULTI-MSMS	A375_MHC_IP_R1	1	587.2343139648438	2	586.30131	1170.58807	-0.058011	-3.4012E-05	2.6688	0.0015647	2.6108	0.0015307	586.3026781848421	127.95	0.75914	127.95	127.62	128.38	0					25	14	3	0	0	0	0.70312	1	49204	49204		12.241	2.8575	1	20576000			50641	396	36835	37134	49454	49454					0.009596014298494993
SPDLLLQL	8	Unmodified	_SPDLLLQL_					0	0	0			REV__ENST00000369064.7_1_1:150463176-150463952:+|nuORF	REV__ENST00000369064.7_1_1:150463176-150463952:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	897.8974609375	1	898.52441	897.517133	-0.43067	-0.00038697	1.8848	0.0016936	1.4541	0.0013066	898.5270364850322	121.07	0.65588	121.52	121.17	121.82	0.44488					14	12	2	0	0	0	0.972	1	46102	46102		13.508	0	1	29944000	+		50642	24006	36836	37135	49455	49455					0.06427553183004875
SPDLPKLKPD	10	Unmodified	_SPDLPKLKPD_					0	0	0		CON__P02769	CON__P02769	CON__P02769	MULTI-MSMS	A375_MHC_IP_R2	2	370.93438720703125	3	370.544885	1108.61282	0.29817	0.00011049	-0.13354	-4.9483E-05	0.16463	6.1003E-05	370.5447995508286	40.18	0.70958	40.955	40.676	41.386	0.77451					20	13	3	0	0	0	0.71076	1	14863	14863		7.4771	7.4771	1	2169200		+	50643	586	36837	37136	49456	49456					0.062862813032325
SPDPAHPSAK	10	Unmodified	_SPDPAHPSAK_					0	0	0			REV__nc|ENSG00000196498|Q9Y618-5|NCOR2	REV__nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-SECPEP	A375_MHC_IP_R2	2	503.6278076171875	2	503.751256	1005.48796	-1.1992	-0.00060409	0.13704	6.9032E-05	-1.0621	-0.00053505	503.7512293688431	33.672	0.404	34.425	34.247	34.651	0.75225					12	7	2	0	0	0	0.87163	1	12024	12024		19.257	19.257	1	3354000	+		50644	22202	36838	37137	49457	49457					-0.01456591113299055
SPDPGPELDRA	11	Unmodified	_SPDPGPELDRA_					0	0	0			REV__ENST00000550292.1_1_12:30948620-30949103:+|nuORF	REV__ENST00000550292.1_1_12:30948620-30949103:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	385.2585754394531	3	385.187649	1152.54112	0.091826	3.537E-05	-0.17336	-6.6777E-05	-0.081536	-3.1406E-05	385.1873243193381	19.354	0.23279	19.354	19.238	19.471	0					8	4	3	0	0	0	0.9574	1	4835	4835		11.631	6.5839	1	4963900	+		50645	26033	36839	37138	49458	49458					-0.02905258121290899
SPDTYFTLQP	10	Unmodified	_SPDTYFTLQP_					0	0	0			REV__nc|ENSG00000152092|O14525-3|ASTN1	REV__nc|ENSG00000152092|O14525-3|ASTN1	MULTI-SECPEP	A375_MHC_IP_R2	2	390.93951416015625	3	390.188878	1167.5448	-0.18204	-7.1031E-05	-0.63549	-0.00024796	-0.81753	-0.00031899	390.1868271273958	30.461	0.40523	31.18	30.911	31.317	0.71857					14	7	3	0	0	0	0.85226	1	10762	10762		3.3196	0.68841	1	1656900	+		50646	19790	36840	37139	49459	49459					-0.0322658834743379
SPDVSIVHNI	10	Unmodified	_SPDVSIVHNI_					0	0	0			REV__ENSG00000082014|ENST00000262188|SMARCD3	REV__ENSG00000082014|ENST00000262188|SMARCD3	MULTI-SECPEP	A375_MHC_IP_R1	1	540.216064453125	2	540.787838	1079.56112	-0.47183	-0.00025516	-0.72681	-0.00039305	-1.1986	-0.00064821	540.7874494896043	45.843	0.55975	45.843	45.534	46.094	0					22	10	3	0	0	0	0.6774	1	15987	15987		16.149	3.1066	1	2580300	+		50647	16783	36841	37140	49460	49460					0.024525376093379236
SPDVSIVHNI	10	Unmodified	_SPDVSIVHNI_					0	0	0			REV__ENSG00000082014|ENST00000262188|SMARCD3	REV__ENSG00000082014|ENST00000262188|SMARCD3	MULTI-SECPEP	A375_MHC_IP_R2	2	541.1636352539062	2	540.787838	1079.56112	-0.95935	-0.00051881	0.23796	0.00012868	-0.72139	-0.00039012	540.7877922612812	44.987	0.56122	45.756	45.39	45.951	0.7691					17	10	2	0	0	0	0.56504	1	16751	16751		27.629	10.516	1	2243000	+		50648	16783	36841	37140	49461	49461					0.024525376093379236
SPDWWLTRG	9	Unmodified	_SPDWWLTRG_					0	0	0			REV__ENST00000337120.9_2_16:28874893-28875007:+|nuORF	REV__ENST00000337120.9_2_16:28874893-28875007:+|nuORF	MSMS	A375_MHC_IP_R2	2	373.22003173828125	3	373.185691	1116.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.718	1	18.314	17.814	18.814	0.59616								0	0	0	0.15486	1	5226	5226		0	0	1		+		50649	23686	36842	37141	49462	49462					-0.01836311842316718
SPEADLTMEK	10	Unmodified	_SPEADLTMEK_					0	0	0		nc|ENSG00000120498|Q8IYF3|TEX11;ENSG00000120498|ENST00000374333|TEX11	nc|ENSG00000120498|Q8IYF3|TEX11	nc|ENSG00000120498|Q8IYF3|TEX11	MULTI-SECPEP	A375_MHC_IP_R2	2	373.9437255859375	3	374.177873	1119.51179	0.33119	0.00012392	0.064897	2.4283E-05	0.39609	0.00014821	374.17792261905345	27.849	0.30395	28.528	28.351	28.655	0.67857					8	5	2	0	0	0	0.92957	1	9524	9524		1.5923	0	1	1738000			50650	3666	36843	37142	49463	49463					-0.043185384618027456
SPEDIRKW	8	Unmodified	_SPEDIRKW_					0	0	0		nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN	nc|ENSG00000102854|Q13421-4|MSLN	nc|ENSG00000102854|Q13421-4|MSLN	MULTI-SECPEP	A375_MHC_IP_R2	2	516.2053833007812	2	515.769448	1029.52434	-0.92671	-0.00047797	0.99155	0.00051141	0.064841	3.3443E-05	515.769806688582	50.351	0.45736	51.105	50.955	51.412	0.75406					11	8	2	0	0	0	0.92636	1	19047	19047		23.148	1.4018	1	874900			50651	2397	36844	37143	49464	49464					0.010762857834379247
SPEEGAET	8	Unmodified	_SPEEGAET_					0	0	0		ENST00000530908.5_1_21:37444388-37445177:+|nuORF;ENSG00000159228|ENST00000290349|CBR1	ENST00000530908.5_1_21:37444388-37445177:+|nuORF	ENST00000530908.5_1_21:37444388-37445177:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	819.8905029296875	1	819.336669	818.329392	-0.08914	-7.3036E-05	-0.93116	-0.00076294	-1.0203	-0.00083597	819.3366343326115	116.62	0.86467	116.62	116.09	116.95	0					21	16	2	0	0	0	0.972	1	42642	42642		4.3292	1.7518	1	11966000			50652	13158	36845	37144	49465	49465					-0.08703929812224942
SPEGIENTRF	10	Unmodified	_SPEGIENTRF_					0	0	0		ITGA2|p.G545S|1|0.41|ENSG00000164171|chr5:53064942-53064942|G/A|missense_variant	ITGA2|p.G545S|1|0.41|ENSG00000164171|chr5:53064942-53064942|G/A|missense_variant	ITGA2|p.G545S|1|0.41|ENSG00000164171|chr5:53064942-53064942|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	575.6800537109375	2	575.280377	1148.5462	-0.24646	-0.00014178	0.02287	1.3156E-05	-0.22359	-0.00012863	575.2804044035826	58.949	0.45873	58.949	58.786	59.245	0					14	8	2	0	0	0	0.90513	1	21272	21272		12.241	0	1	2175400			50653	14177	36846	37145	49466	49466					-0.022129542586753814
SPEIKKKLQAV	11	Unmodified	_SPEIKKKLQAV_					0	0	0		SPTA1|p.E1367K|2|0.35|ENSG00000163554|chr1:158645283-158645283|C/T|missense_variant	SPTA1|p.E1367K|2|0.35|ENSG00000163554|chr1:158645283-158645283|C/T|missense_variant	SPTA1|p.E1367K|2|0.35|ENSG00000163554|chr1:158645283-158645283|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	620.9796142578125	2	620.884813	1239.75507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.584	1	88.584	88.084	89.084	0								0	0	0	0.16265	1	32523	32523		4.897	1.6157	1				50654	29240	36847	37146	49467	49467					0.1447849404542012
SPELNPRLFK	10	Unmodified	_SPELNPRLFK_					0	0	0		ENSG00000137806|ENST00000260361|NDUFAF1	ENSG00000137806|ENST00000260361|NDUFAF1	ENSG00000137806|ENST00000260361|NDUFAF1	MULTI-SECPEP	A375_MHC_IP_R1	1	401.2956848144531	3	400.896029	1199.66626	-0.13723	-5.5017E-05	-0.058254	-2.3354E-05	-0.19549	-7.8371E-05	400.89596263528415	49.94	0.46069	49.94	49.692	50.153	0					13	8	2	0	0	0	0.63289	1	17682	17682		28.234	11.185	1	2375200			50655	4916	36848	37147	49468	49468					0.07441078805732104
SPELNPRLFK	10	Unmodified	_SPELNPRLFK_					0	0	0		ENSG00000137806|ENST00000260361|NDUFAF1	ENSG00000137806|ENST00000260361|NDUFAF1	ENSG00000137806|ENST00000260361|NDUFAF1	MULTI-SECPEP	A375_MHC_IP_R2	2	401.296142578125	3	400.896029	1199.66626	-0.20224	-8.1076E-05	0.44876	0.0001799	0.24652	9.8829E-05	400.8960867502198	49.072	0.61082	49.83	49.485	50.096	0.75737					23	11	3	0	0	0	0.93069	1	18456	18456		12.228	2.4633	1	2977000			50656	4916	36848	37147	49469	49469					0.07441078805732104
SPENCCYWYPP	11	Unmodified	_SPENCCYWYPP_					0	0	0			REV__ENST00000504875.5_1_5:149433032-149433299:-|nuORF	REV__ENST00000504875.5_1_5:149433032-149433299:-|nuORF	MSMS	A375_MHC_IP_R1	1	679.7042236328125	2	679.762649	1357.51074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.587	1	32.587	32.087	33.087	0								0	0	0	0.16191	1	10543	10543		8.7454	3.4485	1		+		50657	25530	36849	37148	49470	49470					-0.1537107610233761
SPEPQLPKSPN	11	Unmodified	_SPEPQLPKSPN_					0	0	0		ENSG00000197213|ENST00000586855|ZSCAN5B	ENSG00000197213|ENST00000586855|ZSCAN5B	ENSG00000197213|ENST00000586855|ZSCAN5B	MULTI-SECPEP	A375_MHC_IP_R2	2	398.620361328125	3	398.543544	1192.6088	-0.46404	-0.00018494	0.36696	0.00014625	-0.09708	-3.869E-05	398.87811564907526	26.423	0.30449	27.083	26.907	27.212	0.65992					10	5	2	0	0	0	0.98459	1	8918	8918		10.016	4.9687	1	2691500			50658	9131	36850	37149	49471	49471					0.020201918095608562
SPFEVGDGPV	10	Unmodified	_SPFEVGDGPV_					0	0	0			REV__ENSG00000101493|ENST00000443185|ZNF516	REV__ENSG00000101493|ENST00000443185|ZNF516	MULTI-SECPEP	A375_MHC_IP_R1	1	501.6925354003906	2	502.24019	1002.46583	-0.25954	-0.00013035	0.15916	7.9938E-05	-0.10038	-5.0415E-05	502.24047758096185	82.044	0.45589	82.044	81.758	82.214	0					17	8	3	0	0	0	0.9269	1	30031	30031		3.5965	0	1	1086000	+		50659	17174	36851	37150	49472	49472					-0.03530815581700608
SPFHGYTQ	8	Unmodified	_SPFHGYTQ_					0	0	0			REV__nc|ENSG00000116833|O00482-4|NR5A2	REV__nc|ENSG00000116833|O00482-4|NR5A2	MSMS	A375_MHC_IP_R1	1	468.6119384765625	2	468.714142	935.413731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.75	1	104.75	104.25	105.25	0								0	0	0	0.16876	1	38459	38459		12.532	1.4171	1		+		50660	17976	36852	37151	49473	49473					-0.056559342048103645
SPFLGTVGNI	10	Unmodified	_SPFLGTVGNI_					0	0	0			REV__nc|ENSG00000198399|Q9NZM3-4|ITSN2	REV__nc|ENSG00000198399|Q9NZM3-4|ITSN2	MULTI-SECPEP	A375_MHC_IP_R1	1	502.99462890625	2	502.7742	1003.53385	-0.25634	-0.00012888	0.27671	0.00013912	0.020373	1.0243E-05	502.7743090071245	79.135	0.35606	79.135	78.96	79.316	0					8	6	2	0	0	0	0.55307	1	28852	28852		36.506	13.77	1	949310	+		50661	22367	36853	37152	49474	49474					0.032220540689422705
SPFLTRVP	8	Unmodified	_SPFLTRVP_					0	0	0		ENSG00000056586|ENST00000357244|RC3H2;nc|ENSG00000056586|Q9HBD1-6|RC3H2;nc|ENSG00000056586|Q9HBD1-4|RC3H2	ENSG00000056586|ENST00000357244|RC3H2	ENSG00000056586|ENST00000357244|RC3H2	MULTI-SECPEP	A375_MHC_IP_R1	1	459.16595458984375	2	458.766178	915.517802	-0.39842	-0.00018278	0.88211	0.00040468	0.48369	0.0002219	458.76640844996837	52.822	0.60759	52.822	52.541	53.148	0					17	11	2	0	0	0	0.90775	1	18815	18815		14.838	0	1	2078100			50662	1278	36854	37153	49475	49475					0.05666392622708827
SPFRLLARLE	10	Unmodified	_SPFRLLARLE_					0	0	0			REV__ENST00000259008.6_1_17:59938921-59940758:-|nuORF	REV__ENST00000259008.6_1_17:59938921-59940758:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	600.7241821289062	2	601.356222	1200.69789	-0.37765	-0.0002271	-0.13458	-8.093E-05	-0.51223	-0.00030803	601.3559618565473	73.462	0.608	73.462	73.184	73.792	0					17	11	2	0	0	0	0.92227	1	26741	26741		8.7454	0	1	2282200	+		50663	23171	36855	37154	49476	49476					0.10557071559696851
SPFTIRTE	8	Unmodified	_SPFTIRTE_					0	0	0		nc|ENSG00000167889|Q3V5L5-5|MGAT5B;nc|ENSG00000167889|Q3V5L5-2|MGAT5B;chr17:76932775-76937988|409|26.93|0.82|5.04|+|ENST00000428789|MGAT5B,MGAT5B;chr17:76926730-76937988|384|13.81|0.68|4.34|+|ENST00000565043|MGAT5B,MGAT5B;ENSG00000167889|ENST00000569840|MGAT5B;ENST00000374998.3_1_17:74865111-74909907:+|nuORF	nc|ENSG00000167889|Q3V5L5-5|MGAT5B	nc|ENSG00000167889|Q3V5L5-5|MGAT5B	MULTI-MSMS	A375_MHC_IP_R2	2	475.66015625	2	475.750724	949.486896	-0.56753	-0.00027	0.20602	9.8013E-05	-0.36152	-0.00017199	475.7509531184836	39.58	0.35572	40.354	40.169	40.524	0.77451					13	6	3	0	0	0	0.75805	1	14682	14682		18.135	4.2289	1	6496300			50664	446	36856	37155	49477	49477					0.010131945178159185
SPGCGGHP	8	Unmodified	_SPGCGGHP_					0	0	0			REV__ENST00000561623.5_1_16:27472048-27472405:-|nuORF	REV__ENST00000561623.5_1_16:27472048-27472405:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	711.7339477539062	1	711.287885	710.280608	-0.94464	-0.00067191	-2.789	-0.0019838	-3.7336	-0.0026557	711.2858452859533	143.76	0.15266	143.76	143.68	143.84	0					4	2	2	0	0	0	0.77842	1	55117	55117		0.69038	0	1	1385000	+		50665	26177	36857	37156	49478	49478					-0.08612076862311824
SPGCGGHP	8	Unmodified	_SPGCGGHP_					0	0	0			REV__ENST00000561623.5_1_16:27472048-27472405:-|nuORF	REV__ENST00000561623.5_1_16:27472048-27472405:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	711.287885	710.280608	-0.94464	-0.00067191	-2.789	-0.0019838	-3.7336	-0.0026557	711.2858452859533	143.76	0.15266	143.76	143.68	143.84	0	-0.033975	-0.00022022	NaN	0.69038	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1385000	+		50666	26177	36857	37156							-0.08612076862311824
SPGCGGHP	8	Unmodified	_SPGCGGHP_					0	0	0			REV__ENST00000561623.5_1_16:27472048-27472405:-|nuORF	REV__ENST00000561623.5_1_16:27472048-27472405:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	711.287885	710.280608	-0.5532	-0.00039349	-2.2463	-0.0015978	-2.7995	-0.0019913	711.2861512583901	143.8	0.15012	143.83	143.74	143.89	0.024414	0.033975	0.00016575	NaN	0.69038	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1044900	+		50667	26177	36857	37156							-0.08612076862311824
SPGGGGGGA	9	Unmodified	_SPGGGGGGA_					0	0	0		nc|ENSG00000120458|Q6P1R3-3|MSANTD2;ENSG00000120458|ENST00000374979|MSANTD2	nc|ENSG00000120458|Q6P1R3-3|MSANTD2	nc|ENSG00000120458|Q6P1R3-3|MSANTD2	MULTI-SECPEP	A375_MHC_IP_R1	1	616.6278686523438	1	616.26853	615.261253	-0.6926	-0.00042683	-1.9077	-0.0011756	-2.6003	-0.0016025	616.2679574809137	140.26	1.493	140.26	139.78	141.27	0					38	28	2	0	0	0	0.81896	1	54208	54208		0	0	1	2021700			50668	3665	36858	37157	49479	49479					-0.06176709881572151
SPGGPGPA	8	Unmodified	_SPGGPGPA_					0	0	0			REV__ENSG00000169184|ENST00000302326|MN1	REV__ENSG00000169184|ENST00000302326|MN1	MULTI-MSMS	A375_MHC_IP_R1	1	639.276611328125	1	639.309666	638.30239	-1.0084	-0.00064469	-3.5414	-0.0022641	-4.5499	-0.0029088	639.3077820128434	142.06	0.40723	142.06	141.78	142.18	0					13	7	3	0	0	0	0.77861	1	54480	54480		0	0	1	3583500	+		50669	20916	36859	37158	49480	49480					-0.03122948842110418
SPGGPGPA	8	Unmodified	_SPGGPGPA_					0	0	0			REV__ENSG00000169184|ENST00000302326|MN1	REV__ENSG00000169184|ENST00000302326|MN1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	639.309666	638.30239	-1.0084	-0.00064469	-3.5414	-0.0022641	-4.5499	-0.0029088	639.3077820128434	142.06	0.40723	142.06	141.78	142.18	0	-0.020852	-7.487E-05	NaN	0	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3583500	+		50670	20916	36859	37158							-0.03122948842110418
SPGGPGPA	8	Unmodified	_SPGGPGPA_					0	0	0			REV__ENSG00000169184|ENST00000302326|MN1	REV__ENSG00000169184|ENST00000302326|MN1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	639.309666	638.30239	-0.56691	-0.00036243	-3.4187	-0.0021856	-3.9856	-0.002548	639.3074847059178	142.07	0.40285	142.1	141.82	142.23	0.030731	0.020852	3.5939E-06	NaN	0	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2822500	+		50671	20916	36859	37158							-0.03122948842110418
SPGPLPSKV	9	Unmodified	_SPGPLPSKV_					0	0	0			REV__ENSG00000159259|ENST00000314103|CHAF1B	REV__ENSG00000159259|ENST00000314103|CHAF1B	MULTI-SECPEP	A375_MHC_IP_R2	2	441.6578063964844	2	441.258185	880.501818	-0.51595	-0.00022767	0.0045673	2.0154E-06	-0.51138	-0.00022565	441.25814131095507	72.182	1.4724	72.916	72.516	73.988	0.73421					78	28	4	0	0	0	0.50702	1	27331	27331		32.305	0	1	37434000	+		50672	20110	36860	37159	49481	49481					0.05678686385806486
SPGVLLLL	8	Unmodified	_SPGVLLLL_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MSMS	A375_MHC_IP_R2	2	406.402587890625	2	406.268022	810.521491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.59	1	139.65	139.15	140.15	0.059906								0	0	0	0.16876	1	54681	54681		0.69038	0	1				50673	2444	36861	37160	49482	49482					0.10865062396555913
SPHPGLLLD	9	Unmodified	_SPHPGLLLD_					0	0	0		ENSG00000103994|ENST00000564754|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106	ENSG00000103994|ENST00000564754|ZNF106	ENSG00000103994|ENST00000564754|ZNF106	MSMS	A375_MHC_IP_R2	2	474.69219970703125	2	474.761092	947.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.939	1	56.689	56.189	57.189	0.75015								0	0	0	0.1499	1	21138	21138		21.747	0	1				50674	2477	36862	37161	49483	49483					0.031777848974684275
SPIKMRASL	9	Unmodified	_SPIKMRASL_					0	0	0			REV__nc|ENSG00000115839|Q15042-4|RAB3GAP1	REV__nc|ENSG00000115839|Q15042-4|RAB3GAP1	MSMS	A375_MHC_IP_R1	1	502.1905822753906	2	501.791869	1001.56919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.756	1	71.756	71.256	72.256	0								0	0	0	0.13472	1	26084	26084		31.268	0.6318	1		+		50675	17916	36863	37162	49484	49484					0.06846393325110967
SPILATVRR	9	Unmodified	_SPILATVRR_					0	0	0			REV__ENST00000478241.6_2_12:56223566-56224012:+|nuORF	REV__ENST00000478241.6_2_12:56223566-56224012:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	507.17626953125	2	506.816733	1011.61891	-0.98627	-0.00049986	-0.42089	-0.00021331	-1.4072	-0.00071317	506.81650947606363	51.61	0.40646	52.362	52.219	52.626	0.75225					14	7	2	0	0	0	0.76187	1	19525	19525		11.64	0.81637	1	3631100	+		50676	25208	36864	37163	49485	49485					0.1135684432541666
SPILVKLFYQ	10	Unmodified	_SPILVKLFYQ_					0	0	0			REV__nc|ENSG00000139910|P51513-2|NOVA1	REV__nc|ENSG00000139910|P51513-2|NOVA1	MULTI-MSMS	A375_MHC_IP_R2	2	604.7574462890625	2	604.357899	1206.70125	-0.2521	-0.00015236	-0.12013	-7.2604E-05	-0.37223	-0.00022496	604.3576764833512	140	0.76942	140.06	139.75	140.52	0.059906					53	14	5	0	0	0	0.72378	1	54778	54778		1.6526	0.17072	1	133010000	+		50677	19184	36865	37164	49486	49486					0.10616321613701984
SPIPCFAH	8	Unmodified	_SPIPCFAH_					0	0	0		ENST00000343855.5_1_7:150026962-150027241:+|nuORF	ENST00000343855.5_1_7:150026962-150027241:+|nuORF	ENST00000343855.5_1_7:150026962-150027241:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	436.66595458984375	2	436.210181	870.405809	-0.046155	-2.0133E-05	0.22043	9.6156E-05	0.17428	7.6023E-05	436.21031147910435	47.709	0.40332	47.709	47.467	47.87	0					10	7	2	0	0	0	0.7479	1	16810	16810		20.871	20.871	1	1623600			50678	10890	36866	37165	49487	49487					-0.03457784725935653
SPIPCFAH	8	Unmodified	_SPIPCFAH_					0	0	0		ENST00000343855.5_1_7:150026962-150027241:+|nuORF	ENST00000343855.5_1_7:150026962-150027241:+|nuORF	ENST00000343855.5_1_7:150026962-150027241:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	436.6659851074219	2	436.210181	870.405809	-0.098142	-4.281E-05	0.068743	2.9986E-05	-0.029399	-1.2824E-05	436.2101394567568	46.807	0.50783	47.569	47.309	47.817	0.76128					14	9	2	0	0	0	0.7479	1	17573	17573		20.871	20.871	1	1518700			50679	10890	36866	37165	49488	49488					-0.03457784725935653
SPIPENTPETV	11	Unmodified	_SPIPENTPETV_					0	0	0		ENSG00000197479|ENST00000354757|PCDHB11;nc|ENSG00000120328|Q9Y5F1-2|PCDHB12;ENSG00000120328|ENST00000239450|PCDHB12	ENSG00000197479|ENST00000354757|PCDHB11	ENSG00000197479|ENST00000354757|PCDHB11	MULTI-SECPEP	A375_MHC_IP_R1	1	394.57928466796875	3	395.199554	1182.57683	0.23232	9.1812E-05	3.4718	0.001372	3.7041	0.0014639	395.5347966950075	21.516	0.45671	21.516	21.25	21.706	0					13	8	2	0	0	0	0.99018	1	5658	5658		3.8459	1.7619	1	681290			50680	9164	36867	37166	49489	49489					-0.007152206642786041
SPIRDISY	8	Unmodified	_SPIRDISY_					0	0	0		nc|ENSG00000135541|Q8N157-2|AHI1;ENSG00000135541|ENST00000265602|AHI1;ENST00000531788.5_1_6:135639727-135754270:-|nuORF	nc|ENSG00000135541|Q8N157-2|AHI1	nc|ENSG00000135541|Q8N157-2|AHI1	MULTI-MSMS	A375_MHC_IP_R1	1	475.6604919433594	2	475.750724	949.486896	-0.012225	-5.8161E-06	-0.10342	-4.92E-05	-0.11564	-5.5016E-05	475.7507422069154	44.751	0.55927	44.751	44.42	44.98	0					14	10	2	0	0	0	0.74543	1	15577	15577		21.537	2.28	1	1787400			50681	4695	36868	37167	49490	49490					0.010131945177931811
SPIRFAAQV	9	Unmodified	_SPIRFAAQV_					0	0	0		ENSG00000178401|ENST00000549441|DNAJC22	ENSG00000178401|ENST00000549441|DNAJC22	ENSG00000178401|ENST00000549441|DNAJC22	MULTI-SECPEP	A375_MHC_IP_R1	1	495.18218994140625	2	494.782359	987.550165	-0.38739	-0.00019167	0.17976	8.8943E-05	-0.20763	-0.00010273	494.78232821846103	60.845	0.40795	60.845	60.514	60.922	0					12	7	2	0	0	0	0.5212	1	21924	21924		26.268	0	1	1646300			50682	8158	36869	37168	49491	49491					0.0558918002569726
SPIRVRSE	8	Unmodified	_SPIRVRSE_					0	0	0		nc|ENSG00000128881|Q6IQ55-3|TTBK2;nc|ENSG00000128881|Q6IQ55-2|TTBK2;ENSG00000128881|ENST00000267890|TTBK2	nc|ENSG00000128881|Q6IQ55-3|TTBK2	nc|ENSG00000128881|Q6IQ55-3|TTBK2	MULTI-MSMS	A375_MHC_IP_R1	1	472.6698913574219	2	472.269616	942.524678	0.042972	2.0294E-05	-0.23868	-0.00011272	-0.19571	-9.2428E-05	472.26946770518805	114.33	2.847	114.33	113.29	116.14	0					114	55	3	0	0	0	0.77741	4	41882	41882;42098;42310;42542		4.3292	0	1	15887000			50683	14592	36870	37169	49492;49493;49494;49495	49492					0.051117055032818826
SPIRVRSE	8	Unmodified	_SPIRVRSE_					0	0	0		nc|ENSG00000128881|Q6IQ55-3|TTBK2;nc|ENSG00000128881|Q6IQ55-2|TTBK2;ENSG00000128881|ENST00000267890|TTBK2	nc|ENSG00000128881|Q6IQ55-3|TTBK2	nc|ENSG00000128881|Q6IQ55-3|TTBK2	MULTI-MSMS	A375_MHC_IP_R1	1	472.6697082519531	2	472.269616	942.524678	-0.134	-6.3282E-05	-0.091512	-4.3218E-05	-0.22551	-0.0001065	472.2695864967751	116.57	1.2706	116.57	115.89	117.16	0					49	24	3	0	0	0	0.77741	1	42763	42763		4.3292	0	1	10499000			50684	14592	36870	37169	49496	49496					0.051117055032818826
SPIRVRSE	8	Unmodified	_SPIRVRSE_					0	0	0		nc|ENSG00000128881|Q6IQ55-3|TTBK2;nc|ENSG00000128881|Q6IQ55-2|TTBK2;ENSG00000128881|ENST00000267890|TTBK2	nc|ENSG00000128881|Q6IQ55-3|TTBK2	nc|ENSG00000128881|Q6IQ55-3|TTBK2	MULTI-MSMS	A375_MHC_IP_R2	2	472.6700439453125	2	472.269616	942.524678	-0.36844	-0.000174	-0.04294	-2.0279E-05	-0.41138	-0.00019428	472.26956050665984	113.7	2.7925	114.41	113.62	116.41	0.70984					135	54	3	0	0	0	0.77741	2	43146	43146;43378		4.3292	0	1	15090000			50685	14592	36870	37169	49497;49498	49497					0.051117055032818826
SPIRVRSE	8	Unmodified	_SPIRVRSE_					0	0	0		nc|ENSG00000128881|Q6IQ55-3|TTBK2;nc|ENSG00000128881|Q6IQ55-2|TTBK2;ENSG00000128881|ENST00000267890|TTBK2	nc|ENSG00000128881|Q6IQ55-3|TTBK2	nc|ENSG00000128881|Q6IQ55-3|TTBK2	MULTI-MSMS	A375_MHC_IP_R2	2	472.6687927246094	2	472.269616	942.524678	-0.40515	-0.00019134	-0.75125	-0.00035479	-1.1564	-0.00054613	472.269214655733	116.18	0.91557	116.84	116.11	117.02	0.65962					28	17	2	0	0	0	0.77741	1	43868	43868		4.3292	0	1	17588000			50686	14592	36870	37169	49499	49499					0.051117055032818826
SPIRVRSE	8	Unmodified	_SPIRVRSE_					0	0	0		nc|ENSG00000128881|Q6IQ55-3|TTBK2;nc|ENSG00000128881|Q6IQ55-2|TTBK2;ENSG00000128881|ENST00000267890|TTBK2	nc|ENSG00000128881|Q6IQ55-3|TTBK2	nc|ENSG00000128881|Q6IQ55-3|TTBK2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	472.269616	942.524678	-0.134	-6.3282E-05	-0.091512	-4.3218E-05	-0.22551	-0.0001065	472.2695864967751	116.57	1.2706	116.57	115.89	117.16	0	-0.13394	0.00029914	NaN	4.3292	49	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10499000			50687	14592	36870	37169							0.051117055032818826
SPIVKKTKMQ	10	Unmodified	_SPIVKKTKMQ_					0	0	0			REV__ENSG00000145569|ENST00000274217|OTULINL	REV__ENSG00000145569|ENST00000274217|OTULINL	MULTI-SECPEP	A375_MHC_IP_R1	1	387.4453125	3	387.233765	1158.67946	0.42211	0.00016345	-0.04919	-1.9048E-05	0.37292	0.00014441	387.23371178265205	37.473	0.40937	37.473	37.249	37.658	0					16	7	3	0	0	0	0.94707	1	12556	12556		0.10794	0.10794	1	4829700	+		50688	19481	36871	37170	49500	49500					0.10647193593490556
SPKILKTTLY	10	Unmodified	_SPKILKTTLY_					0	0	0			REV__ENST00000475975.5_1_22:30758047-30767232:+|nuORF	REV__ENST00000475975.5_1_22:30758047-30767232:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	388.97222900390625	3	388.572663	1162.69616	-0.55784	-0.00021676	-0.29721	-0.00011549	-0.85504	-0.00033225	388.57247961481556	24.846	0.55875	25.49	25.314	25.873	0.64368					23	10	3	0	0	0	0.70027	1	8256	8256		12.175	2.6308	1	21739000	+		50689	22054	36872	37171	49501	49501					0.12132017751082458
SPKKVSAL	8	Unmodified	_SPKKVSAL_					0	0	0		ENSG00000109436|ENST00000442267|TBC1D9	ENSG00000109436|ENST00000442267|TBC1D9	ENSG00000109436|ENST00000442267|TBC1D9	MULTI-SECPEP	A375_MHC_IP_R1	1	414.6553039550781	2	415.260728	828.506903	0.41535	0.00017248	-0.37725	-0.00015666	0.038094	1.5819E-05	415.2602072609044	56.523	0.40614	56.523	56.347	56.753	0					13	7	3	0	0	0	0.972	1	20213	20213		1.6526	0	1	916240			50690	2868	36873	37172	49502	49502					0.08578990248417995
SPKLVGPVLK	10	Unmodified	_SPKLVGPVLK_					0	0	0			REV__tr|U7T8A7|U7T8A7_FUSNUPTSsystem,N-acetylglucosamine-specificIIBCcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00177PE=4SV=1	REV__tr|U7T8A7|U7T8A7_FUSNUPTSsystem,N-acetylglucosamine-specificIIBCcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00177PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	519.986328125	2	519.33951	1036.66447	-0.41689	-0.00021651	0.86272	0.00044805	0.44583	0.00023154	519.3400054771221	68.823	0.30312	68.823	68.666	68.969	0					8	5	2	0	0	0	0.93961	1	24917	24917		1.3295	0.87119	1	504470	+		50691	28884	36874	37173	49503	49503					0.14760069787803332
SPLAPMVASP	10	Unmodified	_SPLAPMVASP_					0	0	0			REV__ENST00000578865.5_1_17:73623504-73624919:-|nuORF	REV__ENST00000578865.5_1_17:73623504-73624919:-|nuORF	MSMS	A375_MHC_IP_R1	1	485.2286376953125	2	485.257328	968.500103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.482	1	47.482	46.982	47.982	0								0	0	0	0.15038	1	16706	16706		17.113	2.2746	1		+		50692	26332	36875	37174	49504	49504					0.014593093055509598
SPLAWPSLRI	10	Unmodified	_SPLAWPSLRI_					0	0	0			REV__ENST00000522111.2_2_1:27321037-27326424:+|nuORF	REV__ENST00000522111.2_2_1:27321037-27326424:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	379.9534912109375	3	380.557236	1138.64988	-0.081214	-3.0907E-05	0.39934	0.00015197	0.31812	0.00012106	380.55731261865935	80.879	0.66497	81.624	81.365	82.03	0.74473					20	12	2	0	0	0	0.92227	1	30646	30646		5.0475	0	1	2296600	+		50693	25726	36876	37175	49505	49505					0.08609997639655376
SPLEFDLSGF	10	Unmodified	_SPLEFDLSGF_					0	0	0			REV__UGT3A1|p.G176E|1|0.21|ENSG00000145626|chr5:35965702-35965702|C/T|missense_variant	REV__UGT3A1|p.G176E|1|0.21|ENSG00000145626|chr5:35965702-35965702|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	556.668701171875	2	556.268947	1110.52334	-0.40327	-0.00022432	0.31043	0.00017269	-0.092831	-5.1639E-05	556.2690040821385	93.202	0.8659	93.202	92.821	93.686	0					38	16	3	0	0	0	0.38158	1	34242	34242		52.268	8.4101	1	6795700	+		50694	28950	36877	37176	49506	49506					-0.02749973376126036
SPLFHFSL	8	Unmodified	_SPLFHFSL_					0	0	0			REV__ENST00000597790.5_1_19:50879837-50880852:+|nuORF	REV__ENST00000597790.5_1_19:50879837-50880852:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	474.6518859863281	2	474.252903	946.491253	-0.53886	-0.00025555	-0.7831	-0.00037139	-1.322	-0.00062694	474.2525844730973	41.836	1.1743	42.61	42.3	43.474	0.77451					28	22	2	0	0	0	0.90224	1	15592	15592		8.5933	0.68312	1	2439100	+		50695	26483	36878	37177	49507	49507					0.015867037313796573
SPLISQLEEA	10	Unmodified	_SPLISQLEEA_					0	0	0			REV__ENST00000520776.5_1_17:45405719-45473360:+|nuORF	REV__ENST00000520776.5_1_17:45405719-45473360:+|nuORF	MSMS	A375_MHC_IP_R2	2	362.9254455566406	3	362.860761	1085.56045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.394	1	47.159	46.659	47.659	0.76519								0	0	0	0.15136	1	17374	17374		9.7643	1.6087	1		+		50696	21522	36879	37178	49508	49508					0.02109698169647345
SPLLSSIG	8	Unmodified	_SPLLSSIG_					0	0	0			REV__ENST00000482968.1_1_1:120282927-120286660:+|nuORF	REV__ENST00000482968.1_1_1:120282927-120286660:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	387.9485778808594	2	387.223811	772.433069	-0.68335	-0.00026461	1.2935	0.00050087	0.61014	0.00023626	387.22422134943355	33.723	0.35308	34.475	34.298	34.651	0.75225					9	6	2	0	0	0	0.91495	1	12126	12126		18.135	0	1	1103100	+		50697	16975	36880	37179	49509	49509					0.03775022086108493
SPLPPTSVPG	10	Unmodified	_SPLPPTSVPG_					0	0	0			REV__GIT1|p.P479S|1|0.42|ENSG00000108262|chr17:29576396-29576396|G/A|missense_variant	REV__GIT1|p.P479S|1|0.42|ENSG00000108262|chr17:29576396-29576396|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	475.66009521484375	2	476.260925	950.507297	-0.1536	-7.3154E-05	0.92904	0.00044247	0.77544	0.00036931	476.26171856951885	49.499	0.75975	49.499	49.033	49.793	0					24	14	3	0	0	0	0.9269	1	17419	17419		3.5965	0	1	2397600	+		50698	26683	36881	37180	49510	49510					0.03006365177623138
SPLRLGSN	8	Unmodified	_SPLRLGSN_					0	0	0			REV__ENST00000377991.8_1_9:35853833-35854379:+|nuORF	REV__ENST00000377991.8_1_9:35853833-35854379:+|nuORF	MSMS	A375_MHC_IP_R2	2	422.1579284667969	2	422.237784	842.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.967	1	77.71	77.21	78.21	0.74293								0	0	0	0.16876	1	29223	29223		28.487	0	1		+		50699	24169	36882	37181	49511	49511					0.03348345066183356
SPLRWRIY	8	Unmodified	_SPLRWRIY_					0	0	0		ENST00000433477.3_1_4:156846568-156846796:-|nuORF	ENST00000433477.3_1_4:156846568-156846796:-|nuORF	ENST00000433477.3_1_4:156846568-156846796:-|nuORF	MSMS	A375_MHC_IP_R2	2	545.7188720703125	2	545.811451	1089.60835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.33	1	111.07	110.57	111.57	0.73692								0	0	0	0.16876	1	41622	41622		28.173	7.7196	1				50700	11894	36883	37182	49512	49512					0.06712861670985149
SPLSLTLSGV	10	Unmodified	_SPLSLTLSGV_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-2|HYDIN;ENST00000378856.8_2_16:70845233-70899022:-|nuORF	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	A375_MHC_IP_R2	2	487.1660461425781	2	487.281857	972.549162	-1.1487	-0.00055974	0.44455	0.00021662	-0.70414	-0.00034312	487.28207434282933	53.065	1.018	53.816	53.487	54.505	0.75105					24	19	2	0	0	0	0.32951	1	19962	19962		24.021	0	1	3867500			50701	6242	36884	37183	49513	49513					0.06178920866148019
SPLSWWGQWSL	11	Unmodified	_SPLSWWGQWSL_					0	0	0			REV__ENST00000383463.8_1_3:129023850-129024000:+|nuORF	REV__ENST00000383463.8_1_3:129023850-129024000:+|nuORF	MSMS	A375_MHC_IP_R2	2	449.6579895019531	3	449.555784	1345.64552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.39	1	56.141	55.641	56.641	0.75075								0	0	0	0.15551	1	20924	20924		17.049	4.176	1		+		50702	24248	36885	37184	49514	49514					-0.013475115738856402
SPLTKSISL	9	Unmodified	_SPLTKSISL_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	A375_MHC_IP_R2	2	474.66851806640625	2	473.2844	944.554247	-0.69124	-0.00032715	0.11634	5.5063E-05	-0.57489	-0.00027209	473.284395353184	44.699	0.76283	45.468	45.188	45.951	0.7691					39	14	4	0	0	0	0.53367	1	16746	16746		18.146	0	1	19991000			50703	7536	36886	37185	49515	49515					0.079752247287729
SPLVLLST	8	Unmodified	_SPLVLLST_					0	0	0			REV__ENST00000542400.5_1_12:125435197-125437195:-|nuORF	REV__ENST00000542400.5_1_12:125435197-125437195:-|nuORF	MSMS	A375_MHC_IP_R2	2	415.2948303222656	2	415.255111	828.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.748	1	83.491	82.991	83.991	0.74293								0	0	0	0.16876	1	31436	31436		8.5933	0	1		+		50704	25967	36887	37186	49516	49516					0.07456168154271836
SPLVRRSH	8	Unmodified	_SPLVRRSH_					0	0	0			REV__AURKC|p.P303S|1|0.45|ENSG00000105146|chr19:57235394-57235394|C/T|missense_variant	REV__AURKC|p.P303S|1|0.45|ENSG00000105146|chr19:57235394-57235394|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	475.6601867675781	2	476.277775	950.540997	-0.43376	-0.00020659	2.7009	0.0012864	2.2671	0.0010798	476.27904590439425	43.062	0.25232	43.834	43.674	43.926	0.7724					7	4	2	0	0	0	0.96266	1	16063	16063		11.64	3.047	1	1581200	+		50705	15487	36888	37187	49517	49517					0.06374831460038877
SPMRFGGGGGG	11	Unmodified	_SPMRFGGGGGG_					0	0	0		nc|ENSG00000166783|Q9Y4F3-6|MARF1;ENST00000548216.2_1_16:15729470-15733102:-|nuORF;nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1	nc|ENSG00000166783|Q9Y4F3-6|MARF1	nc|ENSG00000166783|Q9Y4F3-6|MARF1	MSMS	A375_MHC_IP_R2	2	490.1729736328125	2	490.224351	978.434149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.399	1	24.029	23.529	24.529	0.63014								0	0	0	0.16112	1	7520	7520		12.873	1.2323	1				50706	7110	36889	37188	49518	49518					-0.05593086816611503
SPMRPQTWAS	10	Unmodified	_SPMRPQTWAS_					0	0	0			REV__ENST00000326132.10_1_22:31583153-31597580:+|nuORF	REV__ENST00000326132.10_1_22:31583153-31597580:+|nuORF	MSMS	A375_MHC_IP_R1	1	387.44537353515625	3	387.522086	1159.54443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.752	1	39.752	39.252	40.252	0								0	0	0	0.15451	1	13614	13614		3.3196	0.68841	1		+		50707	23601	36890	37189	49519	49519					-0.028962865482526468
SPNCAYAVTGL	11	Unmodified	_SPNCAYAVTGL_					0	0	0			REV__AluJo_dup72535|chr19:43608346-43608640:+|1.6942657444946003|0.2207392627405336|2.94|472.0|12|3|sense	REV__AluJo_dup72535|chr19:43608346-43608640:+|1.6942657444946003|0.2207392627405336|2.94|472.0|12|3|sense	MULTI-MSMS	A375_MHC_IP_R1	1	548.6592407226562	2	548.260599	1094.50665	-0.76694	-0.00042048	0.58054	0.00031829	-0.1864	-0.00010219	548.2611738064919	131.11	0.50684	131.11	130.87	131.38	0					18	9	3	0	0	0	0.60747	1	50587	50587		22.736	8.8302	1	6071000	+		50708	15363	36891	37190	49520	49520					-0.03682797533747362
SPNCAYAVTGL	11	Unmodified	_SPNCAYAVTGL_					0	0	0			REV__AluJo_dup72535|chr19:43608346-43608640:+|1.6942657444946003|0.2207392627405336|2.94|472.0|12|3|sense	REV__AluJo_dup72535|chr19:43608346-43608640:+|1.6942657444946003|0.2207392627405336|2.94|472.0|12|3|sense	MSMS	A375_MHC_IP_R1	1	548.2255859375	2	548.260599	1094.50665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.84	1	130.84	130.34	131.34	0								0	0	0	0.13186	1	50415	50415		29.082	5.061	1		+		50709	15363	36891	37190	49521	49521					-0.03682797533747362
SPNGGETQFL	10	Unmodified	_SPNGGETQFL_					0	0	0		nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;ENST00000503608.5_1_6:86227446-86235949:-|nuORF	nc|ENSG00000135317|Q9Y5W7-2|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-MSMS	A375_MHC_IP_R2	2	525.70458984375	2	525.248546	1048.48254	-0.32374	-0.00017004	-0.95121	-0.00049962	-1.275	-0.00066967	525.2479606220093	93.932	0.40588	94.677	94.412	94.818	0.74474					13	7	2	0	0	0	0.70651	1	35730	35730		9.3831	0	1	1348700			50710	4667	36892	37191	49522	49522					-0.03976314695773908
SPNGGETQFL	10	Unmodified	_SPNGGETQFL_					0	0	0		nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;ENST00000503608.5_1_6:86227446-86235949:-|nuORF	nc|ENSG00000135317|Q9Y5W7-2|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	525.248546	1048.48254	-0.64607	-0.00033935	-0.23969	-0.0001259	-0.88576	-0.00046524	525.2484193264663	94.634	0.4078	94.634	94.446	94.853	0	-0.021249	0.00038437	NaN	9.3831	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1885900			50711	4667	36892	37191							-0.03976314695773908
SPNGYSPATG	10	Unmodified	_SPNGYSPATG_					0	0	0			REV__ENST00000567368.1_1_16:28948327-28950281:+|nuORF	REV__ENST00000567368.1_1_16:28948327-28950281:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	475.6601257324219	2	475.714339	949.414125	-0.56307	-0.00026786	0.053861	2.5623E-05	-0.50921	-0.00024224	475.714328694118	36.163	0.865	36.163	35.83	36.695	0					45	16	4	0	0	0	0.6806	1	12280	12280		14.838	0	1	20749000	+		50712	21457	36893	37192	49523	49523					-0.06260559275608557
SPNGYSPATG	10	Unmodified	_SPNGYSPATG_					0	0	0			REV__ENST00000567368.1_1_16:28948327-28950281:+|nuORF	REV__ENST00000567368.1_1_16:28948327-28950281:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	475.6601867675781	2	475.714339	949.414125	-0.75909	-0.00036111	0.17654	8.3984E-05	-0.58255	-0.00027713	475.71437921994806	35.403	0.75864	36.166	35.829	36.587	0.76338					41	14	4	0	0	0	0.6806	1	12985	12985		14.838	0	1	20821000	+		50713	21457	36893	37192	49524	49524					-0.06260559275608557
SPNKTEFTL	9	Unmodified	_SPNKTEFTL_					0	0	0			REV__ENSG00000173064|ENST00000682272|HECTD4	REV__ENSG00000173064|ENST00000682272|HECTD4	MULTI-MSMS	A375_MHC_IP_R2	2	518.6768188476562	2	518.769114	1035.52368	-0.77984	-0.00040456	-0.23441	-0.0001216	-1.0143	-0.00052616	518.7689631592409	80.881	0.86584	81.626	81.214	82.08	0.74474					47	16	4	0	0	0	0.4867	1	30573	30573		20.454	0	1	32726000	+		50714	21191	36894	37193	49525	49525					0.007334463437246086
SPPAPFLV	8	Unmodified	_SPPAPFLV_					0	0	0		ENSG00000115109|ENST00000263713|EPB41L5;nc|ENSG00000115109|Q9HCM4-3|EPB41L5	ENSG00000115109|ENST00000263713|EPB41L5	ENSG00000115109|ENST00000263713|EPB41L5	MULTI-MSMS	A375_MHC_IP_R1	1	414.6368103027344	2	414.236722	826.45889	0.28467	0.00011792	-0.2425	-0.00010045	0.042169	1.7468E-05	414.2365686480166	81.26	0.60787	81.26	80.999	81.607	0					23	11	3	0	0	0	0.64599	1	29684	29684		42.968	8.7807	1	3951900			50715	3270	36895	37194	49526	49526					0.038719163283644775
SPPAPFLV	8	Unmodified	_SPPAPFLV_					0	0	0		ENSG00000115109|ENST00000263713|EPB41L5;nc|ENSG00000115109|Q9HCM4-3|EPB41L5	ENSG00000115109|ENST00000263713|EPB41L5	ENSG00000115109|ENST00000263713|EPB41L5	MULTI-MATCH	A375_MHC_IP_R2	2		2	414.236722	826.45889	0.0047851	1.9822E-06	-0.32598	-0.00013503	-0.3212	-0.00013305	414.23652287460504	80.292	0.55696	81.036	80.708	81.265	0.74474	-0.11161	-3.2527E-05	NaN	42.968	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4002500			50716	3270	36895	37194							0.038719163283644775
SPPEGGLSVR	10	Unmodified	_SPPEGGLSVR_					0	0	0			REV__ENSG00000171763|ENST00000305560|SPATA5L1	REV__ENSG00000171763|ENST00000305560|SPATA5L1	MSMS	A375_MHC_IP_R1	1	499.60528564453125	2	499.766906	997.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.386	1	48.386	47.886	48.886	0								0	0	0	0.1356	1	17067	17067		32.037	9.3012	1		+		50717	21092	36896	37195	49527	49527					0.020399819208023473
SPPEGGLSVR	10	Unmodified	_SPPEGGLSVR_					0	0	0			REV__ENSG00000171763|ENST00000305560|SPATA5L1	REV__ENSG00000171763|ENST00000305560|SPATA5L1	MULTI-SECPEP	A375_MHC_IP_R2	2	500.2030334472656	2	499.766906	997.519259	-0.39951	-0.00019966	-0.2243	-0.0001121	-0.62381	-0.00031176	499.76667354591933	47.489	0.55994	48.25	48.022	48.582	0.76128					13	10	2	0	0	0	0.73795	1	17813	17813		26.021	13.78	1	2614100	+		50718	21092	36896	37195	49528	49528					0.020399819208023473
SPPPPHRP	8	Unmodified	_SPPPPHRP_					0	0	0		ENSG00000100842|ENST00000216733|EFS;nc|ENSG00000100842|O43281-2|EFS;nc|ENSG00000100842|O43281-3|EFS	ENSG00000100842|ENST00000216733|EFS	ENSG00000100842|ENST00000216733|EFS	MSMS	A375_MHC_IP_R1	1	442.6714782714844	2	442.740494	883.466435	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.68	1	39.68	39.18	40.18	0								0	0	0	0.16876	1	13584	13584		19.439	1.304	1				50719	2225	36897	37196	49529	49529					0.020040686486595405
SPPPPPPPP	9	Unmodified	_SPPPPPPPP_					0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;ENSG00000127666|ENST00000248244|TICAM1;ZNF318|p.P1446S|1|0.58|ENSG00000171467|chr6:43339662-43339662|G/A|missense_variant;FHDC1|p.P67S|1|0.44|ENSG00000137460|chr4:152943256-152943256|C/T|missense_variant;ENSG00000103479|ENST00000262133|RBL2;ENSG00000274209|ENST00000620264|ANTXRL;KIAA1217|p.G1042E|1|0.41|ENSG00000120549|chr10:24531872-24531872|G/A|missense_variant;ENST00000587013.5_1_19:38882703-38882923:+|nuORF;ENST00000471339.1_1_5:173036657-173043649:-|nuORF;ENSG00000260428|ENST00000567180|SCX;nc|ENSG00000136754|Q8IZP0-11|ABI1;ENSG00000099999|ENST00000382363|RNF215;ENSG00000100312|ENST00000216139|ACR;ENSG00000107816|ENST00000454422|LZTS2;nc|ENSG00000109920|Q8N3X1-2|FNBP4;ENSG00000109920|ENST00000263773|FNBP4;ENSG00000126461|ENST00000360565|SCAF1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1;ENSG00000137460|ENST00000511601|FHDC1;ENSG00000139800|ENST00000267294|ZIC5;RBM33|p.E1103Gfs*12|1|0.21|ENSG00000184863|chr7:155766588-155766588|A/-|frameshift_variant;ENSG00000184863|ENST00000401878|RBM33;ENST00000307403.6_1_7:155500050-155531112:+|nuORF;nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA	nc|ENSG00000120549|Q5T5P2-3|KIAA1217;REV__ENSG00000170807|ENST00000458573|LMOD2;ENSG00000100312|ENST00000216139|ACR;ENSG00000107816|ENST00000454422|LZTS2;nc|ENSG00000109920|Q8N3X1-2|FNBP4;ENSG00000126461|ENST00000360565|SCAF1;nc|ENSG00000136754|Q8IZP0-10|ABI1;ENSG00000137460|ENST00000511601|FHDC1;ENSG00000139800|ENST00000267294|ZIC5;RBM33|p.E1103Gfs*12|1|0.21|ENSG00000184863|chr7:155766588-155766588|A/-|frameshift_variant;nc|ENSG00000164944|Q69YN4-3|VIRMA;REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E;REV__ENSG00000015285|ENST00000376701|WAS;REV__nc|ENSG00000091656|Q86UP3|ZFHX4;REV__ENSG00000107816|ENST00000454422|LZTS2;REV__ENSG00000112541|ENST00000539869|PDE10A;REV__ENSG00000139218|ENST00000369367|SCAF11;REV__ENSG00000141867|ENST00000679869|BRD4;REV__ENSG00000148143|ENST00000277225|ZNF462;REV__ENSG00000169992|ENST00000302926|NLGN2	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-MSMS	A375_MHC_IP_R1	1	442.1395263671875	2	441.739628	881.464704	-0.14993	-6.6231E-05	-0.06382	-2.8192E-05	-0.21375	-9.4423E-05	441.73957629942464	36.314	7.2183	36.314	35.319	42.537	0					246	141	4	0	0	0	0.0019454	4	11907	11907;12147;12386;13105		144.66	0	1	15265000			50720	16955;14737;19615;16123;4883;3668;17736;17499;8615;2761;2157;21020;2904;5112;20960;4814;4044;16244;19143;19288	36898	37197	49530;49531;49532;49533	49530					0.019230148400424696
SPPPPPPPP	9	Unmodified	_SPPPPPPPP_					0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;ENSG00000127666|ENST00000248244|TICAM1;ZNF318|p.P1446S|1|0.58|ENSG00000171467|chr6:43339662-43339662|G/A|missense_variant;FHDC1|p.P67S|1|0.44|ENSG00000137460|chr4:152943256-152943256|C/T|missense_variant;ENSG00000103479|ENST00000262133|RBL2;ENSG00000274209|ENST00000620264|ANTXRL;KIAA1217|p.G1042E|1|0.41|ENSG00000120549|chr10:24531872-24531872|G/A|missense_variant;ENST00000587013.5_1_19:38882703-38882923:+|nuORF;ENST00000471339.1_1_5:173036657-173043649:-|nuORF;ENSG00000260428|ENST00000567180|SCX;nc|ENSG00000136754|Q8IZP0-11|ABI1;ENSG00000099999|ENST00000382363|RNF215;ENSG00000100312|ENST00000216139|ACR;ENSG00000107816|ENST00000454422|LZTS2;nc|ENSG00000109920|Q8N3X1-2|FNBP4;ENSG00000109920|ENST00000263773|FNBP4;ENSG00000126461|ENST00000360565|SCAF1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1;ENSG00000137460|ENST00000511601|FHDC1;ENSG00000139800|ENST00000267294|ZIC5;RBM33|p.E1103Gfs*12|1|0.21|ENSG00000184863|chr7:155766588-155766588|A/-|frameshift_variant;ENSG00000184863|ENST00000401878|RBM33;ENST00000307403.6_1_7:155500050-155531112:+|nuORF;nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA	nc|ENSG00000120549|Q5T5P2-3|KIAA1217;REV__ENSG00000170807|ENST00000458573|LMOD2;ENSG00000100312|ENST00000216139|ACR;ENSG00000107816|ENST00000454422|LZTS2;nc|ENSG00000109920|Q8N3X1-2|FNBP4;ENSG00000126461|ENST00000360565|SCAF1;nc|ENSG00000136754|Q8IZP0-10|ABI1;ENSG00000137460|ENST00000511601|FHDC1;ENSG00000139800|ENST00000267294|ZIC5;RBM33|p.E1103Gfs*12|1|0.21|ENSG00000184863|chr7:155766588-155766588|A/-|frameshift_variant;nc|ENSG00000164944|Q69YN4-3|VIRMA;REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E;REV__ENSG00000015285|ENST00000376701|WAS;REV__nc|ENSG00000091656|Q86UP3|ZFHX4;REV__ENSG00000107816|ENST00000454422|LZTS2;REV__ENSG00000112541|ENST00000539869|PDE10A;REV__ENSG00000139218|ENST00000369367|SCAF11;REV__ENSG00000141867|ENST00000679869|BRD4;REV__ENSG00000148143|ENST00000277225|ZNF462;REV__ENSG00000169992|ENST00000302926|NLGN2	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-MSMS	A375_MHC_IP_R2	2	442.13934326171875	2	441.739628	881.464704	-0.59524	-0.00026294	0.22303	9.852E-05	-0.37221	-0.00016442	441.7396616542514	35.88	6.5108	36.643	35.525	42.036	0.76338					231	127	3	0	0	0	0.008207	3	14000	13200;14000;14080		129.2	0	1	19704000			50721	16955;14737;19615;16123;4883;3668;17736;17499;8615;2761;2157;21020;2904;5112;20960;4814;4044;16244;19143;19288	36898	37197	49534;49535;49536	49535					0.019230148400424696
SPPPPPPPP	9	Unmodified	_SPPPPPPPP_					0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;ENSG00000127666|ENST00000248244|TICAM1;ZNF318|p.P1446S|1|0.58|ENSG00000171467|chr6:43339662-43339662|G/A|missense_variant;FHDC1|p.P67S|1|0.44|ENSG00000137460|chr4:152943256-152943256|C/T|missense_variant;ENSG00000103479|ENST00000262133|RBL2;ENSG00000274209|ENST00000620264|ANTXRL;KIAA1217|p.G1042E|1|0.41|ENSG00000120549|chr10:24531872-24531872|G/A|missense_variant;ENST00000587013.5_1_19:38882703-38882923:+|nuORF;ENST00000471339.1_1_5:173036657-173043649:-|nuORF;ENSG00000260428|ENST00000567180|SCX;nc|ENSG00000136754|Q8IZP0-11|ABI1;ENSG00000099999|ENST00000382363|RNF215;ENSG00000100312|ENST00000216139|ACR;ENSG00000107816|ENST00000454422|LZTS2;nc|ENSG00000109920|Q8N3X1-2|FNBP4;ENSG00000109920|ENST00000263773|FNBP4;ENSG00000126461|ENST00000360565|SCAF1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1;ENSG00000137460|ENST00000511601|FHDC1;ENSG00000139800|ENST00000267294|ZIC5;RBM33|p.E1103Gfs*12|1|0.21|ENSG00000184863|chr7:155766588-155766588|A/-|frameshift_variant;ENSG00000184863|ENST00000401878|RBM33;ENST00000307403.6_1_7:155500050-155531112:+|nuORF;nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA	nc|ENSG00000120549|Q5T5P2-3|KIAA1217;REV__ENSG00000170807|ENST00000458573|LMOD2;ENSG00000100312|ENST00000216139|ACR;ENSG00000107816|ENST00000454422|LZTS2;nc|ENSG00000109920|Q8N3X1-2|FNBP4;ENSG00000126461|ENST00000360565|SCAF1;nc|ENSG00000136754|Q8IZP0-10|ABI1;ENSG00000137460|ENST00000511601|FHDC1;ENSG00000139800|ENST00000267294|ZIC5;RBM33|p.E1103Gfs*12|1|0.21|ENSG00000184863|chr7:155766588-155766588|A/-|frameshift_variant;nc|ENSG00000164944|Q69YN4-3|VIRMA;REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E;REV__ENSG00000015285|ENST00000376701|WAS;REV__nc|ENSG00000091656|Q86UP3|ZFHX4;REV__ENSG00000107816|ENST00000454422|LZTS2;REV__ENSG00000112541|ENST00000539869|PDE10A;REV__ENSG00000139218|ENST00000369367|SCAF11;REV__ENSG00000141867|ENST00000679869|BRD4;REV__ENSG00000148143|ENST00000277225|ZNF462;REV__ENSG00000169992|ENST00000302926|NLGN2	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MSMS	A375_MHC_IP_R2	2	441.6386413574219	2	441.739628	881.464704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.568	1	43.341	42.841	43.841	0.7724								0	0	0	0.040533	1	15838	15838		57.471	0	1				50722	16955;14737;19615;16123;4883;3668;17736;17499;8615;2761;2157;21020;2904;5112;20960;4814;4044;16244;19143;19288	36898	37197	49537	49537					0.019230148400424696
SPPPPPPPP	9	Unmodified	_SPPPPPPPP_					0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;ENSG00000127666|ENST00000248244|TICAM1;ZNF318|p.P1446S|1|0.58|ENSG00000171467|chr6:43339662-43339662|G/A|missense_variant;FHDC1|p.P67S|1|0.44|ENSG00000137460|chr4:152943256-152943256|C/T|missense_variant;ENSG00000103479|ENST00000262133|RBL2;ENSG00000274209|ENST00000620264|ANTXRL;KIAA1217|p.G1042E|1|0.41|ENSG00000120549|chr10:24531872-24531872|G/A|missense_variant;ENST00000587013.5_1_19:38882703-38882923:+|nuORF;ENST00000471339.1_1_5:173036657-173043649:-|nuORF;ENSG00000260428|ENST00000567180|SCX;nc|ENSG00000136754|Q8IZP0-11|ABI1;ENSG00000099999|ENST00000382363|RNF215;ENSG00000100312|ENST00000216139|ACR;ENSG00000107816|ENST00000454422|LZTS2;nc|ENSG00000109920|Q8N3X1-2|FNBP4;ENSG00000109920|ENST00000263773|FNBP4;ENSG00000126461|ENST00000360565|SCAF1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1;ENSG00000137460|ENST00000511601|FHDC1;ENSG00000139800|ENST00000267294|ZIC5;RBM33|p.E1103Gfs*12|1|0.21|ENSG00000184863|chr7:155766588-155766588|A/-|frameshift_variant;ENSG00000184863|ENST00000401878|RBM33;ENST00000307403.6_1_7:155500050-155531112:+|nuORF;nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA	nc|ENSG00000120549|Q5T5P2-3|KIAA1217;REV__ENSG00000170807|ENST00000458573|LMOD2;ENSG00000100312|ENST00000216139|ACR;ENSG00000107816|ENST00000454422|LZTS2;nc|ENSG00000109920|Q8N3X1-2|FNBP4;ENSG00000126461|ENST00000360565|SCAF1;nc|ENSG00000136754|Q8IZP0-10|ABI1;ENSG00000137460|ENST00000511601|FHDC1;ENSG00000139800|ENST00000267294|ZIC5;RBM33|p.E1103Gfs*12|1|0.21|ENSG00000184863|chr7:155766588-155766588|A/-|frameshift_variant;nc|ENSG00000164944|Q69YN4-3|VIRMA;REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E;REV__ENSG00000015285|ENST00000376701|WAS;REV__nc|ENSG00000091656|Q86UP3|ZFHX4;REV__ENSG00000107816|ENST00000454422|LZTS2;REV__ENSG00000112541|ENST00000539869|PDE10A;REV__ENSG00000139218|ENST00000369367|SCAF11;REV__ENSG00000141867|ENST00000679869|BRD4;REV__ENSG00000148143|ENST00000277225|ZNF462;REV__ENSG00000169992|ENST00000302926|NLGN2	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MSMS	A375_MHC_IP_R2	2	441.69439697265625	2	441.739628	881.464704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.568	1	45.337	44.837	45.837	0.7691								0	0	0	0.099728	1	16637	16637		42.095	0	1				50723	16955;14737;19615;16123;4883;3668;17736;17499;8615;2761;2157;21020;2904;5112;20960;4814;4044;16244;19143;19288	36898	37197	49538	49538					0.019230148400424696
SPPPPTGCQ	9	Unmodified	_SPPPPTGCQ_					0	0	0		ENST00000396720.7_1_19:48206015-48206201:+|nuORF	ENST00000396720.7_1_19:48206015-48206201:+|nuORF	ENST00000396720.7_1_19:48206015-48206201:+|nuORF	MSMS	A375_MHC_IP_R2	2	442.1392517089844	2	442.202553	882.390553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.26	1	37.031	36.531	37.531	0.7709								0	0	0	0.14359	1	13205	13205		28.487	11.4	1				50724	11495	36899	37198	49539	49539					-0.05534696313782206
SPPSTWSVDQP	11	Unmodified	_SPPSTWSVDQP_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	A375_MHC_IP_R1	1	400.9250183105469	3	400.855899	1199.54587	-0.2907	-0.00011653	-2.4604	-0.00098627	-2.7511	-0.0011028	400.8533656528517	25.193	0.66132	25.193	25.053	25.714	0					31	12	4	0	0	0	0.99165	1	7394	7394		5.8681	0.084707	1	6043700	+		50725	21639	36900	37199	49540	49540					-0.04592373978516662
SPQFGGGG	8	Unmodified	_SPQFGGGG_					0	0	0			REV__ENST00000487787.5_1_1:202275897-202288332:+|nuORF	REV__ENST00000487787.5_1_1:202275897-202288332:+|nuORF	MSMS	A375_MHC_IP_R2	2	353.5599365234375	2	353.661378	705.308203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.22	1	111.96	111.46	112.46	0.73692								0	0	0	0.16876	1	41939	41939		0	0	1		+		50726	18704	36901	37200	49541	49541					-0.05623850330403002
SPQLTLTQV	9	Unmodified	_SPQLTLTQV_					0	0	0			REV__ENSG00000102763|ENST00000379310|VWA8	REV__ENSG00000102763|ENST00000379310|VWA8	MULTI-SECPEP	A375_MHC_IP_R1	1	494.1796875	2	493.779482	985.544411	-0.65952	-0.00032566	-0.17792	-8.7853E-05	-0.83744	-0.00041351	493.7796729236142	41.24	0.865	41.24	40.963	41.828	0					29	16	2	0	0	0	0.14422	1	14213	14213		61.357	15.337	1	17582000	+		50727	17230	36902	37201	49542	49542					0.051060367233731085
SPQLTLTQV	9	Unmodified	_SPQLTLTQV_					0	0	0			REV__ENSG00000102763|ENST00000379310|VWA8	REV__ENSG00000102763|ENST00000379310|VWA8	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1793518066406	2	493.779482	985.544411	-0.61396	-0.00030316	-0.14915	-7.3648E-05	-0.76311	-0.00037681	493.77959902247363	40.485	1.2192	41.26	40.828	42.047	0.77451					38	23	2	0	0	0	0.096726	1	14959	14959		61.357	0	1	13502000	+		50728	17230	36902	37201	49543	49543					0.051060367233731085
SPQSHPKKLN	10	Unmodified	_SPQSHPKKLN_					0	0	0			REV__ENSG00000122735|ENST00000242317|DNAI1	REV__ENSG00000122735|ENST00000242317|DNAI1	MSMS	A375_MHC_IP_R1	1	568.2112426757812	2	568.314554	1134.61456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.629	1	37.629	37.129	38.129	0								0	0	0	0.14673	1	12699	12699		24.021	10.115	1		+		50729	18218	36903	37202	49544	49544					0.052633351118629434
SPQTLTTIV	9	Unmodified	_SPQTLTTIV_					0	0	0		ENSG00000115271|ENST00000437150|GCA;ENST00000487445.6_1_2:163200677-163215720:+|nuORF	ENSG00000115271|ENST00000437150|GCA	ENSG00000115271|ENST00000437150|GCA	MULTI-SECPEP	A375_MHC_IP_R1	1	959.4013671875	1	959.540788	958.533512	0.078134	7.4973E-05	-0.02624	-2.5178E-05	0.051895	4.9795E-05	959.5407314430133	99.042	0.60809	99.042	98.711	99.319	0					28	11	3	0	0	0	0.74412	1	36295	36295		6.2058	6.2058	1	11318000			50730	3292	36904	37203	49545	49545					0.05258634349104341
SPRARAQL	8	Unmodified	_SPRARAQL_					0	0	0		ENST00000566303.5_1_15:79060537-79082096:-|nuORF	ENST00000566303.5_1_15:79060537-79082096:-|nuORF	ENST00000566303.5_1_15:79060537-79082096:-|nuORF	MSMS	A375_MHC_IP_R2	2	449.66094970703125	2	449.764501	897.514448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.46	1	67.197	66.697	67.697	0.73631								0	0	0	0.16876	1	25180	25180		12.532	0	1				50731	13560	36905	37204	49546	49546					0.06159142568697007
SPRLAAFLSSN	11	Unmodified	_SPRLAAFLSSN_					0	0	0		NLRP10|p.G440S|2|0.2|ENSG00000182261|chr11:7960294-7960294|C/T|missense_variant	NLRP10|p.G440S|2|0.2|ENSG00000182261|chr11:7960294-7960294|C/T|missense_variant	NLRP10|p.G440S|2|0.2|ENSG00000182261|chr11:7960294-7960294|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	387.4452209472656	3	388.212017	1161.61422	-0.10102	-3.9218E-05	1.2032	0.0004671	1.1022	0.00042788	388.5481264280379	36.744	0.25423	36.744	36.541	36.795	0					6	4	2	0	0	0	0.99018	1	12316	12316		6.2344	0.45093	1	383680			50732	15002	36906	37205	49547	49547					0.0398791539200829
SPRRARPRGH	10	Unmodified	_SPRRARPRGH_					0	0	0		ENST00000370611.3_1_1:85331802-85358886:-|nuORF	ENST00000370611.3_1_1:85331802-85358886:-|nuORF	ENST00000370611.3_1_1:85331802-85358886:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	396.59344482421875	3	397.230628	1188.67005	-0.091848	-3.6485E-05	-1.0857	-0.00043127	-1.1776	-0.00046776	397.2304020068374	25.13	0.40442	25.13	24.953	25.357	0					11	7	2	0	0	0	0.93873	1	7308	7308		5.0475	2.9615	1	2412300			50733	11153	36907	37206	49548	49548					0.08326606142827586
SPRVPDGR	8	Unmodified	_SPRVPDGR_					0	0	0		nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;ENST00000572579.1_1_17:7796637-7797935:+|nuORF	nc|ENSG00000170004|Q12873-3|CHD3	nc|ENSG00000170004|Q12873-3|CHD3	MULTI-MSMS	A375_MHC_IP_R1	1	442.640869140625	2	442.240858	882.467164	0.1408	6.2267E-05	0.22351	9.8847E-05	0.36431	0.00016111	442.2408523056226	107.99	4.6855	107.99	106.27	110.95	0					140	91	2	0	0	0	0.77797	1	40011	40011		2.3027	0	1	1916800			50734	14761	36908	37207	49549	49549					0.021228632977113193
SPRYWLWYTTK	11	Unmodified	_SPRYWLWYTTK_					0	0	0		nc|ENSG00000177595|Q9HB75-6|PIDD1;ENST00000527357.5_1_11:799959-801918:-|nuORF;nc|ENSG00000177595|Q9HB75-5|PIDD1;ENST00000534525.5_1_11:799959-803120:-|nuORF	nc|ENSG00000177595|Q9HB75-6|PIDD1	nc|ENSG00000177595|Q9HB75-6|PIDD1	MSMS	A375_MHC_IP_R2	2	750.8841552734375	2	750.885344	1499.75613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.5	1	113.22	112.72	113.72	0.72458								0	0	0	0.16323	1	42410	42410		1.9064	0.42447	1				50735	13098	36909	37208	49550	49550					0.026247084143051325
SPSFCCCH	8	Unmodified	_SPSFCCCH_					0	0	0			REV__nc|ENSG00000196151|Q8N9V3-2|WDSUB1	REV__nc|ENSG00000196151|Q8N9V3-2|WDSUB1	MSMS	A375_MHC_IP_R1	1	442.1395568847656	2	442.148409	882.282265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.059	1	40.059	39.559	40.559	0								0	0	0	0.16876	1	13741	13741		2.5775	0	1		+		50736	22164	36910	37209	49551	49551					-0.16358527160218728
SPSFCCCH	8	Unmodified	_SPSFCCCH_					0	0	0			REV__nc|ENSG00000196151|Q8N9V3-2|WDSUB1	REV__nc|ENSG00000196151|Q8N9V3-2|WDSUB1	MSMS	A375_MHC_IP_R2	2	442.1389465332031	2	442.148409	882.282265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.554	1	40.328	39.828	40.828	0.77451								0	0	0	0.16876	1	14611	14611		2.5775	0	1		+		50737	22164	36910	37209	49552	49552					-0.16358527160218728
SPSGGGGG	8	Unmodified	_SPSGGGGG_					0	0	0		ENST00000478691.5_1_1:23670744-23670828:-|nuORF;ENSG00000198680|ENST00000358022|TUSC1	REV__ENSG00000183307|ENST00000331437|TMEM121B	REV__ENSG00000183307|ENST00000331437|TMEM121B	MULTI-SECPEP	A375_MHC_IP_R2	2	575.99072265625	1	575.24198	574.234704	-0.28786	-0.00016559	4.4533	0.0025617	4.1654	0.0023961	575.2441058511133	97.753	0.3065	98.509	98.432	98.739	0.75586					6	5	2	0	0	0	0.90224	1	37095	37095		13.508	0	1	1041100	+		50738	21748	36911	37210	49553	49553					-0.06944398772895966
SPSLQPFQV	9	Unmodified	_SPSLQPFQV_					0	0	0		nc|ENSG00000162714|Q96IT1-2|ZNF496;ENSG00000162714|ENST00000682384|ZNF496	nc|ENSG00000162714|Q96IT1-2|ZNF496	nc|ENSG00000162714|Q96IT1-2|ZNF496	MULTI-MSMS	A375_MHC_IP_R1	1	502.18450927734375	2	501.766374	1001.5182	-0.44199	-0.00022178	-0.37349	-0.00018741	-0.81549	-0.00040918	501.7663845669279	95.59	0.45325	95.59	95.364	95.817	0					11	8	2	0	0	0	0.46038	1	35202	35202		21.747	2.3076	1	509780			50739	6580	36912	37211	49554	49554					0.01749767551905279
SPSRRWWYRCY	11	Unmodified	_SPSRRWWYRCY_					0	0	0		nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6-3|LILRB1;ENSG00000104972|ENST00000324602|LILRB1;nc|ENSG00000104972|Q8NHL6-5|LILRB1	nc|ENSG00000104972|Q8NHL6|LILRB1	nc|ENSG00000104972|Q8NHL6|LILRB1	MULTI-MSMS	A375_MHC_IP_R2	2	780.7689819335938	2	780.369869	1558.72519	-0.8672	-0.00067674	-0.70645	-0.00055129	-1.5737	-0.001228	780.3691982475096	90.522	0.91302	91.257	90.753	91.666	0.7345					23	17	2	0	0	0	0.7362	1	34447	34447		2.9952	0.49676	1	2645400			50740	2560	36913	37212	49555	49555					-0.03182768171564021
SPSSCNEN	8	Unmodified	_SPSSCNEN_					0	0	0			REV__nc|ENSG00000196562|Q8IWU5-2|SULF2	REV__nc|ENSG00000196562|Q8IWU5-2|SULF2	MSMS	A375_MHC_IP_R1	1	419.1473083496094	2	419.1558	836.297046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.256	1	78.256	77.756	78.756	0								0	0	0	0.16876	1	28559	28559		5.2307	2.3415	1		+		50741	22208	36914	37213	49556	49556					-0.12765040486874568
SPSSNGCMNTL	11	Unmodified	_SPSSNGCMNTL_					0	0	0		ENSG00000153179|ENST00000542104|RASSF3	ENSG00000153179|ENST00000542104|RASSF3	ENSG00000153179|ENST00000542104|RASSF3	MULTI-MSMS	A375_MHC_IP_R1	1	555.6289672851562	2	555.731348	1109.44814	-0.53464	-0.00029711	-2.1059	-0.0011703	-2.6405	-0.0014674	556.2317508035169	47.541	1.0198	47.541	46.85	47.87	0					51	19	3	0	0	0	0.72494	1	16683	16683		13.615	2.1202	1	8195000			50742	6013	36915	37214	49557	49557					-0.10220222170528359
SPSSTLSGMSA	11	Unmodified	_SPSSTLSGMSA_					0	0	0			REV__ENSG00000054523|ENST00000676179|KIF1B	REV__ENSG00000054523|ENST00000676179|KIF1B	MULTI-MSMS	A375_MHC_IP_R1	1	512.6530151367188	2	512.734414	1023.45428	-0.51271	-0.00026288	-0.19921	-0.00010214	-0.71191	-0.00036502	512.7340886537096	60.92	0.76458	60.92	60.514	61.279	0					30	14	3	0	0	0	0.47886	1	22077	22077		32.786	3.7041	1	2971600	+		50743	16404	36916	37215	49558	49558					-0.05651380667336525
SPSSTLSGMSA	11	Unmodified	_SPSSTLSGMSA_					0	0	0			REV__ENSG00000054523|ENST00000676179|KIF1B	REV__ENSG00000054523|ENST00000676179|KIF1B	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	512.734414	1023.45428	-1.0743	-0.00055084	-0.44075	-0.00022599	-1.5151	-0.00077682	512.7341791394689	60.274	0.76313	61.019	60.551	61.314	0.74503	0.049108	-0.00014723	NaN	32.786	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3016400	+		50744	16404	36916	37215							-0.05651380667336525
SPSTNSINPV	10	Unmodified	_SPSTNSINPV_					0	0	0		ENST00000558588.5_1_15:40583969-40599873:-|nuORF;nc|ENSG00000137841|Q00722-3|PLCB2;nc|ENSG00000137841|Q00722-2|PLCB2;ENSG00000137841|ENST00000260402|PLCB2	ENST00000558588.5_1_15:40583969-40599873:-|nuORF	ENST00000558588.5_1_15:40583969-40599873:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	508.1668395996094	2	508.256371	1014.49819	-0.40369	-0.00020518	-0.72081	-0.00036636	-1.1245	-0.00057153	508.256001305142	75.066	0.40521	75.066	74.857	75.262	0					11	7	2	0	0	0	0.90853	1	27297	27297		6.7232	0	1	824280			50745	4926	36917	37216	49559	49559					-0.008480281787115018
SPTAAWPAG	9	Unmodified	_SPTAAWPAG_					0	0	0		ENSG00000187714|ENST00000374115|SLC18A3	ENSG00000187714|ENST00000374115|SLC18A3	ENSG00000187714|ENST00000374115|SLC18A3	MULTI-MSMS	A375_MHC_IP_R1	1	857.8146362304688	1	857.415194	856.407917	-0.36865	-0.00031609	0.96301	0.0008257	0.59436	0.00050961	857.4156522395072	76.278	0.5055	76.278	76.067	76.572	0					15	9	2	0	0	0	0.6898	1	27792	27792		7.9102	7.9102	1	1677800			50746	8851	36918	37217	49560	49560					-0.026030327164789924
SPTAAWPAG	9	Unmodified	_SPTAAWPAG_					0	0	0		ENSG00000187714|ENST00000374115|SLC18A3	ENSG00000187714|ENST00000374115|SLC18A3	ENSG00000187714|ENST00000374115|SLC18A3	MULTI-MATCH	A375_MHC_IP_R2	2		1	857.415194	856.407917	-0.65311	-0.00055999	-0.18859	-0.0001617	-0.8417	-0.00072169	857.4152639952177	75.554	0.46086	76.295	76.026	76.487	0.74052	0.0080394	-0.00018006	NaN	7.9102	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1570700			50747	8851	36918	37217							-0.026030327164789924
SPTAELGVGV	10	Unmodified	_SPTAELGVGV_					0	0	0			REV__ENST00000545682.5_1_11:67232087-67232680:-|nuORF	REV__ENST00000545682.5_1_11:67232087-67232680:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	465.6502380371094	2	465.250557	928.486562	-0.20506	-9.5404E-05	0.045012	2.0942E-05	-0.16005	-7.4462E-05	465.25051690063634	104.12	0.66248	104.12	103.78	104.44	0					16	12	2	0	0	0	0.12314	1	38232	38232		58.679	0	1	2098500	+		50748	21161	36919	37218	49561	49561					0.019457747979799933
SPTEEENKL	9	Unmodified	_SPTEEENKL_					0	0	0			REV__nc|ENSG00000164045|P30304-2|CDC25A	REV__nc|ENSG00000164045|P30304-2|CDC25A	MSMS	A375_MHC_IP_R2	2	523.6639404296875	2	523.753661	1045.49277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.538	1	60.285	59.785	60.785	0.74714								0	0	0	0.12472	1	22531	22531		34.402	4.5611	1		+		50749	20439	36920	37219	49562	49562					-0.02815751761181673
SPTTALCLPEE	11	Unmodified	_SPTTALCLPEE_					0	0	0			REV__SVA_D_dup1229|chr17:30522805-30524227:+|1.105592693116747|0.476847412502663|1.21|471.0|9|1|sense	REV__SVA_D_dup1229|chr17:30522805-30524227:+|1.105592693116747|0.476847412502663|1.21|471.0|9|1|sense	MSMS	A375_MHC_IP_R2	2	387.44525146484375	3	387.52164	1159.54309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.089	1	36.858	36.358	37.358	0.7687								0	0	0	0.16249	1	13128	13128		2.6312	0	1		+		50750	28065	36921	37220	49563	49563					-0.03029965427708703
SPVGDHRDMSS	11	Unmodified	_SPVGDHRDMSS_					0	0	0			REV__nc|ENSG00000008196|Q92481-2|TFAP2B	REV__nc|ENSG00000008196|Q92481-2|TFAP2B	MULTI-MSMS	A375_MHC_IP_R2	2	396.908447265625	3	396.508505	1186.50368	-0.23619	-9.365E-05	0.53648	0.00021272	0.3003	0.00011907	396.5087550691973	44.921	0.46013	45.69	45.441	45.901	0.7691					20	8	3	0	0	0	0.73332	1	16853	16853		2.6312	0	1	1937200	+		50751	27091	36922	37221	49564	49564					-0.08210672658537987
SPVGLDLPE	9	Unmodified	_SPVGLDLPE_					0	0	0			REV__nc|ENSG00000196557|O95180-2|CACNA1H	REV__nc|ENSG00000196557|O95180-2|CACNA1H	MULTI-MSMS	A375_MHC_IP_R2	2	926.8900146484375	1	926.482939	925.475663	-0.3054	-0.00028295	0.85803	0.00079495	0.55263	0.000512	926.4831470338014	96.299	0.60878	97.049	96.754	97.363	0.75044					20	11	3	0	0	0	0.46038	1	36466	36466		21.747	5.8995	1	3029200	+		50752	27437	36923	37222	49565	49565					0.009943724236677554
SPVIWRPTIM	10	Unmodified	_SPVIWRPTIM_					0	0	0			REV__nc|ENSG00000115109|Q9HCM4-3|EPB41L5	REV__nc|ENSG00000115109|Q9HCM4-3|EPB41L5	MULTI-MSMS	A375_MHC_IP_R2	2	600.733154296875	2	600.333901	1198.65325	-0.53481	-0.00032107	0.043151	2.5905E-05	-0.49166	-0.00029516	600.3338132898577	127.4	2.0247	127.67	126.55	128.58	0.26593					61	39	2	0	0	0	0.70651	1	50162	50162		9.3831	9.3831	1	26832000	+		50753	27184	36924	37223	49566	49566					0.06186924422013362
SPVLGKVMLY	10	Unmodified	_SPVLGKVMLY_					0	0	0			REV__ENST00000216181.9_1_22:36677793-36678213:-|nuORF	REV__ENST00000216181.9_1_22:36677793-36678213:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1106.5723876953125	1	1106.62783	1105.62055	-0.17891	-0.00019799	-2.3472	-0.0025975	-2.5261	-0.0027955	1106.6243270975824	133.53	0.25429	133.53	133.36	133.61	0					9	4	3	0	0	0	0.93961	1	51425	51425		3.2813	0.54611	1	5476100	+		50754	23033	36925	37224	49567	49567					0.07196717299166266
SPVLGKVMLY	10	Unmodified	_SPVLGKVMLY_					0	0	0			REV__ENST00000216181.9_1_22:36677793-36678213:-|nuORF	REV__ENST00000216181.9_1_22:36677793-36678213:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	1106.62783	1105.62055	0.17997	0.00019916	-2.654	-0.002937	-2.474	-0.0027378	1106.6239522857736	133.34	0.30281	133.5	133.4	133.7	0.16487	-0.011684	-0.00024058	NaN	3.2813	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3824400	+		50755	23033	36925	37224							0.07196717299166266
SPVLHGDPEIF	11	Unmodified	_SPVLHGDPEIF_					0	0	0		CYP7B1|p.P397S|1|0.33|ENSG00000172817|chr8:64604726-64604726|G/A|missense_variant	CYP7B1|p.P397S|1|0.33|ENSG00000172817|chr8:64604726-64604726|G/A|missense_variant	CYP7B1|p.P397S|1|0.33|ENSG00000172817|chr8:64604726-64604726|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	604.695556640625	2	605.808771	1209.60299	-0.40554	-0.00024568	-0.8106	-0.00049107	-1.2161	-0.00073674	605.8081858100209	83.064	0.96039	83.804	83.242	84.203	0.73962					19	11	2	0	0	0	0.72728	1	31650	31650		11.495	2.7493	1	5020200			50756	705	36926	37225	49568	49568					0.006570932978547717
SPVLHGDPEIF	11	Unmodified	_SPVLHGDPEIF_					0	0	0		CYP7B1|p.P397S|1|0.33|ENSG00000172817|chr8:64604726-64604726|G/A|missense_variant	CYP7B1|p.P397S|1|0.33|ENSG00000172817|chr8:64604726-64604726|G/A|missense_variant	CYP7B1|p.P397S|1|0.33|ENSG00000172817|chr8:64604726-64604726|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	605.808771	1209.60299	-0.45178	-0.00027369	-0.78921	-0.00047811	-1.241	-0.0007518	605.8082790966558	83.886	0.65772	83.886	83.634	84.292	0	0.041079	1.2374E-05	NaN	11.495	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5502600			50757	705	36926	37225							0.006570932978547717
SPVLLAEW	8	Unmodified	_SPVLLAEW_					0	0	0		PIGZ|p.L544Ifs*39|1|0.26|ENSG00000119227|chr3:196947266-196947267|AA/-|frameshift_variant	PIGZ|p.L544Ifs*39|1|0.26|ENSG00000119227|chr3:196947266-196947267|AA/-|frameshift_variant	PIGZ|p.L544Ifs*39|1|0.26|ENSG00000119227|chr3:196947266-196947267|AA/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	457.67694091796875	2	457.752736	913.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.042	1	40.042	39.542	40.542	0								0	0	0	0.16876	1	13733	13733		13.508	3.3245	1				50758	15174	36927	37226	49569	49569					0.03071284011514308
SPVPGRYPLAV	11	Unmodified	_SPVPGRYPLAV_					0	0	0		nc|ENSG00000002726|P19801-2|AOC1	nc|ENSG00000002726|P19801-2|AOC1	nc|ENSG00000002726|P19801-2|AOC1	MSMS	A375_MHC_IP_R2	2	385.9268493652344	3	385.888874	1154.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.408	1	22.027	21.527	22.527	0.61932								0	0	0	0.15791	1	6738	6738		15.538	0.58129	1				50759	14446	36928	37227	49570	49570					0.07365693777023807
SPVPSVTPSTW	11	Unmodified	_SPVPSVTPSTW_					0	0	0		ENSG00000186567|ENST00000358777|CEACAM19;nc|ENSG00000186567|Q7Z692|CEACAM19	ENSG00000186567|ENST00000358777|CEACAM19	ENSG00000186567|ENST00000358777|CEACAM19	MULTI-MSMS	A375_MHC_IP_R1	1	386.93267822265625	3	386.532756	1156.57644	-0.011144	-4.3074E-06	0.88561	0.00034232	0.87447	0.00033801	386.5331432630171	39.698	0.45368	39.698	39.391	39.845	0					14	8	3	0	0	0	0.72565	1	13627	13627		7.0371	3.45	1	4997000			50760	8760	36929	37228	49571	49571					0.004414044065242706
SPVSARLRP	9	Unmodified	_SPVSARLRP_					0	0	0		ENST00000563592.5_1_15:73075590-73075839:+|nuORF	ENST00000563592.5_1_15:73075590-73075839:+|nuORF	ENST00000563592.5_1_15:73075590-73075839:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	491.1921691894531	2	491.793258	981.571963	-0.47147	-0.00023186	0.70574	0.00034708	0.23427	0.00011521	491.79367726264303	32.358	0.76543	32.358	31.819	32.585	0					19	14	2	0	0	0	0.75466	1	10298	10298		4.3292	0	1	5217900			50761	13524	36930	37229	49572	49572					0.08043984774280943
SPWGCFFHSL	10	Unmodified	_SPWGCFFHSL_					0	0	0			REV__nc|ENSG00000160446|Q96GR4-2|ZDHHC12	REV__nc|ENSG00000160446|Q96GR4-2|ZDHHC12	MULTI-SECPEP	A375_MHC_IP_R1	1	591.1647338867188	2	590.765852	1179.51715	-0.074031	-4.3735E-05	-2.0295	-0.0011989	-2.1035	-0.0012427	590.7646784171116	21.479	0.30473	21.479	21.301	21.606	0					8	5	2	0	0	0	0.92957	1	5669	5669		6.2058	1.8765	1	2067100	+		50762	27314	36931	37230	49573	49573					-0.06542770088640282
SPWHRFRRFHL	11	Unmodified	_SPWHRFRRFHL_					0	0	0		ENSG00000167685|ENST00000337080|ZNF444;nc|ENSG00000167685|Q8N0Y2-2|ZNF444;ENST00000587195.5_1_19:56657742-56667135:+|nuORF	ENSG00000167685|ENST00000337080|ZNF444	ENSG00000167685|ENST00000337080|ZNF444	MSMS	A375_MHC_IP_R1	1	513.6743774414062	3	513.612849	1537.81672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.646	1	74.646	74.146	75.146	0								0	0	0	0.16334	1	27190	27190		1.3296	0.63198	1				50763	7211	36932	37231	49574	49574					0.06932283307924081
SPWIERAFKEY	11	Unmodified	_SPWIERAFKEY_					0	0	0		ENST00000381061.8_1_22:46239752-46239884:+|nuORF	ENST00000381061.8_1_22:46239752-46239884:+|nuORF	ENST00000381061.8_1_22:46239752-46239884:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	475.6600341796875	3	475.910227	1424.70885	-0.93867	-0.00044672	-0.43615	-0.00020757	-1.3748	-0.00065429	475.90996931901765	53.8	0.51246	54.551	54.353	54.866	0.75105					15	9	2	0	0	0	0.99681	1	20382	20382		4.4062	0	1	2374200			50764	11366	36933	37232	49575	49575					0.013484291433314866
SPWNLHTL	8	Unmodified	_SPWNLHTL_					0	0	0			REV__ENST00000449079.7_1_20:2740250-2740700:+|nuORF	REV__ENST00000449079.7_1_20:2740250-2740700:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	484.1658020019531	2	484.253434	966.492316	-0.90867	-0.00044003	0.78252	0.00037894	-0.12615	-6.1088E-05	484.2537224283902	58.439	0.50945	59.187	58.879	59.389	0.74894					17	9	3	0	0	0	0.7338	1	21991	21991		24.674	1.5255	1	763440	+		50765	24875	36934	37233	49576	49576					0.0077291810027873
SPWNLHTL	8	Unmodified	_SPWNLHTL_					0	0	0			REV__ENST00000449079.7_1_20:2740250-2740700:+|nuORF	REV__ENST00000449079.7_1_20:2740250-2740700:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	484.6820983886719	2	484.253434	966.492316	-0.90867	-0.00044003	0.78252	0.00037894	-0.12615	-6.1088E-05	484.2537224283902	58.439	0.50945	59.187	58.879	59.389	0.74894					17	9	3	0	0	0	0.8957	1	22008	22008		21.747	4.8044	1	763440	+		50766	24875	36934	37233	49577	49577					0.0077291810027873
SPYYRDKL	8	Unmodified	_SPYYRDKL_					0	0	0			REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	MULTI-SECPEP	A375_MHC_IP_R1	1	520.7164306640625	2	521.271824	1040.5291	-0.39643	-0.00020665	-0.17542	-9.1441E-05	-0.57185	-0.00029809	521.2716718071409	62.65	0.61597	62.65	62.505	63.121	0					13	11	2	0	0	0	0.95423	1	22764	22764		12.532	1.7076	1	986100	+		50767	17596	36935	37234	49578	49578					0.010451699261693648
SQADVIPAV	9	Unmodified	_SQADVIPAV_					0	0	0		ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	MULTI-SECPEP	A375_MHC_IP_R1	1	450.6335754394531	2	450.245275	898.475997	-0.14704	-6.6203E-05	-0.031719	-1.4281E-05	-0.17876	-8.0484E-05	450.2452455370858	74.611	0.96347	74.611	74.197	75.16	0					39	18	3	0	0	0	0.16764	1	27188	27188		60.074	12.325	1	5946000			50768	1616	36936	37235	49579	49579					0.022697921435110402
SQADVIPAV	9	Unmodified	_SQADVIPAV_					0	0	0		ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	MULTI-SECPEP	A375_MHC_IP_R2	2	450.6327819824219	2	450.245275	898.475997	-0.27454	-0.00012361	0.24827	0.00011178	-0.026275	-1.183E-05	450.2453092317584	73.877	0.96643	74.615	74.094	75.06	0.73751					36	18	3	0	0	0	0.070665	1	28027	28027		78.728	21.257	1	8219800			50769	1616	36936	37235	49580	49580					0.022697921435110402
SQCCCGHP	8	Unmodified	_SQCCCGHP_					0	0	0		ENSG00000083290|ENST00000395544|ULK2	ENSG00000083290|ENST00000395544|ULK2	ENSG00000083290|ENST00000395544|ULK2	MSMS	A375_MHC_IP_R1	1	417.6388854980469	2	417.638208	833.261863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.03	1	125.03	124.53	125.53	0								0	0	0	0.16876	1	47364	47364		0.79363	0.79363	1				50770	1774	36937	37236	49581	49581					-0.16143697820029956
SQCCECNQY	9	Unmodified	_SQCCECNQY_					0	0	0			REV__CON__P78385	REV__CON__P78385	MSMS	A375_MHC_IP_R2	2	539.126220703125	2	539.175352	1076.33615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.281	1	37.052	36.552	37.552	0.7709								0	0	0	0.15486	1	13214	13214		3.9444	1.3669	1		+	+	50771	15867	36938	37237	49582	49582					-0.19896399519166152
SQCCSSGCGSF	11	Unmodified	_SQCCSSGCGSF_					0	0	0			REV__ENSG00000185940|ENST00000399676|KRTAP5-5	REV__ENSG00000185940|ENST00000399676|KRTAP5-5	MSMS	A375_MHC_IP_R2	2	533.1715087890625	2	533.175352	1064.33615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.568	1	58.317	57.817	58.817	0.74894								0	0	0	0.16307	1	21770	21770		2.7352	0.67545	1		+		50772	21933	36939	37238	49583	49583					-0.1934439951917284
SQCGKYYS	8	Unmodified	_SQCGKYYS_					0	0	0		nc|ENSG00000166452|Q9NQ31-2|AKIP1;ENSG00000166452|ENST00000309377|AKIP1	nc|ENSG00000166452|Q9NQ31-2|AKIP1	nc|ENSG00000166452|Q9NQ31-2|AKIP1	MSMS	A375_MHC_IP_R1	1	468.1480712890625	2	468.20001	934.385467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.171	1	48.171	47.671	48.671	0								0	0	0	0.16876	1	16979	16979		6.7232	0.36906	1				50773	7075	36940	37239	49584	49584					-0.08435000176416452
SQCSQRSEDLY	11	Unmodified	_SQCSQRSEDLY_					0	0	0		CON__ENSEMBL:ENSBTAP00000031900	CON__ENSEMBL:ENSBTAP00000031900	CON__ENSEMBL:ENSBTAP00000031900	MULTI-SECPEP	A375_MHC_IP_R1	1	658.6817626953125	2	658.282791	1314.55103	-0.57412	-0.00037793	-1.3329	-0.00087741	-1.907	-0.0012553	658.2817315042342	91.447	0.60782	91.447	91.148	91.756	0					25	11	3	0	0	0	0.4173	1	33568	33568		36.506	11.625	1	4069600		+	50774	573	36941	37240	49585	49585					-0.09366438178199132
SQCSQRSEDLY	11	Unmodified	_SQCSQRSEDLY_					0	0	0		CON__ENSEMBL:ENSBTAP00000031900	CON__ENSEMBL:ENSBTAP00000031900	CON__ENSEMBL:ENSBTAP00000031900	MULTI-SECPEP	A375_MHC_IP_R2	2	658.681640625	2	658.282791	1314.55103	-0.82146	-0.00054075	-1.4273	-0.00093957	-2.2488	-0.0014803	658.281952289326	90.907	0.75938	91.641	91.16	91.919	0.7345					23	14	2	0	0	0	0.4173	1	34575	34575		36.506	0	1	4253900		+	50775	573	36941	37240	49586	49586					-0.09366438178199132
SQDAPPLLL	9	Unmodified	_SQDAPPLLL_					0	0	0		nc|ENSG00000142330|Q9HC96-8|CAPN10;nc|ENSG00000142330|Q9HC96-3|CAPN10;ENSG00000142330|ENST00000391984|CAPN10	nc|ENSG00000142330|Q9HC96-8|CAPN10	nc|ENSG00000142330|Q9HC96-8|CAPN10	MULTI-SECPEP	A375_MHC_IP_R1	1	477.72845458984375	2	477.26875	952.522947	-0.38394	-0.00018324	0.1983	9.4642E-05	-0.18564	-8.8599E-05	477.26897646428097	62.552	0.46186	62.552	62.198	62.66	0					13	8	2	0	0	0	0.55359	1	22481	22481		21.747	10.106	1	1111300			50776	5304	36942	37241	49587	49587					0.04478651694671498
SQDAQGASEA	10	Unmodified	_SQDAQGASEA_					0	0	0		ENST00000552495.1_2_12:113623643-113624655:+|nuORF	ENST00000552495.1_2_12:113623643-113624655:+|nuORF	ENST00000552495.1_2_12:113623643-113624655:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	482.60382080078125	2	482.204335	962.394118	-0.60487	-0.00029167	-0.29859	-0.00014398	-0.90346	-0.00043565	482.2041326556121	36.463	0.40717	36.463	36.287	36.695	0					14	7	2	0	0	0	0.45919	1	12215	12215		30.637	3.7529	1	2477000			50777	13391	36943	37242	49588	49588					-0.08858355006225338
SQDAQGASEA	10	Unmodified	_SQDAQGASEA_					0	0	0		ENST00000552495.1_2_12:113623643-113624655:+|nuORF	ENST00000552495.1_2_12:113623643-113624655:+|nuORF	ENST00000552495.1_2_12:113623643-113624655:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	482.6038818359375	2	482.204335	962.394118	-0.74195	-0.00035777	-0.12405	-5.9816E-05	-0.866	-0.00041759	482.2042249439691	35.845	0.40771	36.609	36.384	36.792	0.76338					16	7	3	0	0	0	0.72086	1	13059	13059		24.021	3.5669	1	2220600			50778	13391	36943	37242	49589	49589					-0.08858355006225338
SQDFDDSEQDM	11	Unmodified	_SQDFDDSEQDM_					0	0	0			REV__ENSG00000109670|ENST00000281708|FBXW7	REV__ENSG00000109670|ENST00000281708|FBXW7	MSMS	A375_MHC_IP_R1	1	658.6817626953125	2	658.732797	1315.45104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.361	1	91.361	90.861	91.861	0								0	0	0	0.16265	1	33568	33568		4.897	2.1618	1		+		50779	17587	36944	37243	49590	49590					-0.1940672030270889
SQDKRKCE	8	Unmodified	_SQDKRKCE_					0	0	0		chr13:60484757-60485799|433|15.34|0.9|4.09|+|ENST00000484389|TDRD3,TDRD3	chr13:60484757-60485799|433|15.34|0.9|4.09|+|ENST00000484389|TDRD3,TDRD3	chr13:60484757-60485799|433|15.34|0.9|4.09|+|ENST00000484389|TDRD3,TDRD3	MSMS	A375_MHC_IP_R1	1	497.1431579589844	2	497.242741	992.470928	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.626	1	23.626	23.126	24.126	0								0	0	0	0.16876	1	6525	6525		24.674	0	1				50780	422	36945	37244	49591	49591					-0.02560834990742933
SQDPAPPVPS	10	Unmodified	_SQDPAPPVPS_					0	0	0		ENST00000572418.1_1_17:3806502-3807261:-|nuORF	ENST00000572418.1_1_17:3806502-3807261:-|nuORF	ENST00000572418.1_1_17:3806502-3807261:-|nuORF	MSMS	A375_MHC_IP_R1	1	497.64453125	2	497.745639	993.476725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.635	1	23.635	23.135	24.135	0								0	0	0	0.14483	1	6530	6530		27.629	2.9549	1				50781	13618	36946	37245	49592	49592					-0.02027413207429163
SQDPIIFSV	9	Unmodified	_SQDPIIFSV_					0	0	0		ENST00000416720.1_9:42808985-42809460:+|nuORF;ENST00000443754.1_1_9:67328347-67334199:-|nuORF	ENST00000416720.1_9:42808985-42809460:+|nuORF	ENST00000416720.1_9:42808985-42809460:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	503.66583251953125	2	503.266207	1004.51786	-0.44863	-0.00022578	-0.45477	-0.00022887	-0.9034	-0.00045465	503.26597065415314	114.54	0.56042	115.23	114.87	115.43	0.69735					15	10	2	0	0	0	0.012447	1	43184	43184		93.166	25.085	1	3280500			50782	11694	36947	37246	49593	49593					0.01578347832048621
SQDPIIFSV	9	Unmodified	_SQDPIIFSV_					0	0	0		ENST00000416720.1_9:42808985-42809460:+|nuORF;ENST00000443754.1_1_9:67328347-67334199:-|nuORF	ENST00000416720.1_9:42808985-42809460:+|nuORF	ENST00000416720.1_9:42808985-42809460:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1006.2351684570312	1	1005.52514	1004.51786	0.2154	0.00021659	0.70054	0.00070441	0.91594	0.000921	1005.5253488788521	114.5	0.45894	115.21	114.98	115.44	0.70985					15	8	3	0	0	0	0.030244	1	43191	43191		87.258	35.628	1	4615600			50783	11694	36947	37246	49594	49594					0.01578347832048621
SQDPIIFSV	9	Unmodified	_SQDPIIFSV_					0	0	0		ENST00000416720.1_9:42808985-42809460:+|nuORF;ENST00000443754.1_1_9:67328347-67334199:-|nuORF	ENST00000416720.1_9:42808985-42809460:+|nuORF	ENST00000416720.1_9:42808985-42809460:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	503.266207	1004.51786	0.027038	1.3607E-05	0.32892	0.00016554	0.35596	0.00017914	503.2662158429773	115.4	0.61142	115.4	115.12	115.73	0	0.082808	0.0006397	NaN	93.166	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2123100			50784	11694	36947	37246							0.01578347832048621
SQDPNLDEYY	10	Unmodified	_SQDPNLDEYY_					0	0	0		COL5A1|p.P259L|1|0.86|ENSG00000130635|chr9:134727387-134727387|C/T|missense_variant	COL5A1|p.P259L|1|0.86|ENSG00000130635|chr9:134727387-134727387|C/T|missense_variant	COL5A1|p.P259L|1|0.86|ENSG00000130635|chr9:134727387-134727387|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	622.1807250976562	2	622.259308	1242.50406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.52	1	63.52	63.02	64.02	0								0	0	0	0.14601	1	22961	22961		25.399	2.663	1				50785	558	36948	37247	49595	49595					-0.10748974457692384
SQDPNLDEYY	10	Unmodified	_SQDPNLDEYY_					0	0	0		COL5A1|p.P259L|1|0.86|ENSG00000130635|chr9:134727387-134727387|C/T|missense_variant	COL5A1|p.P259L|1|0.86|ENSG00000130635|chr9:134727387-134727387|C/T|missense_variant	COL5A1|p.P259L|1|0.86|ENSG00000130635|chr9:134727387-134727387|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	622.1868896484375	2	622.259308	1242.50406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.638	1	63.638	63.138	64.138	0								0	0	0	0.14925	1	23008	23008		19.257	2.1441	1				50786	558	36948	37247	49596	49596					-0.10748974457692384
SQDPNLDEYY	10	Unmodified	_SQDPNLDEYY_					0	0	0		COL5A1|p.P259L|1|0.86|ENSG00000130635|chr9:134727387-134727387|C/T|missense_variant	COL5A1|p.P259L|1|0.86|ENSG00000130635|chr9:134727387-134727387|C/T|missense_variant	COL5A1|p.P259L|1|0.86|ENSG00000130635|chr9:134727387-134727387|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	622.1798095703125	2	622.259308	1242.50406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.367	1	63.109	62.609	63.609	0.74263								0	0	0	0.10147	1	23640	23640		43.858	18.867	1				50787	558	36948	37247	49597	49597					-0.10748974457692384
SQDPPADLH	9	Unmodified	_SQDPPADLH_					0	0	0		ENST00000474489.5_1_2:220402379-220402472:+|nuORF;ENST00000347842.7_2_2:220402379-220402749:+|nuORF	ENST00000474489.5_1_2:220402379-220402472:+|nuORF	ENST00000474489.5_1_2:220402379-220402472:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	490.6269226074219	2	490.227613	978.440674	-0.88943	-0.00043602	0.20658	0.00010127	-0.68285	-0.00033475	490.227569216392	34.176	1.5207	34.928	34.651	36.172	0.75225					83	29	5	0	0	0	0.12592	1	12494	12494		46.021	0	1	212370000			50788	10915	36949	37248	49598	49598					-0.04940870384291429
SQDPSGDSKLY	11	Unmodified	_SQDPSGDSKLY_					0	0	0		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-SECPEP	A375_MHC_IP_R1	1	599.1748657226562	2	598.775125	1195.5357	-0.84211	-0.00050423	0.90726	0.00054325	0.065157	3.9014E-05	598.7753591294143	29.21	0.40685	29.21	28.996	29.403	0					26	7	4	0	0	0	0.00098459	1	9096	9096		150.06	73.24	1	27760000			50789	8088	36950	37249	49599	49599					-0.054249817037543835
SQDPSGDSKLY	11	Unmodified	_SQDPSGDSKLY_					0	0	0		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-SECPEP	A375_MHC_IP_R2	2	599.1514892578125	2	598.775125	1195.5357	-1.1059	-0.00066218	0.55508	0.00033237	-0.55081	-0.00032981	598.7752527438361	28.564	0.55398	29.263	28.98	29.534	0.69872					25	10	4	0	0	0	0.0002415	1	9861	9861		172.26	95.437	1	41487000			50790	8088	36950	37249	49600	49600					-0.054249817037543835
SQDPTMIGV	9	Oxidation (M)	_SQDPTM(Oxidation (M))IGV_		SQDPTM(1)IGV		SQDPTM(44)IGV	0	0	1		nc|ENSG00000095261|Q16401-2|PSMD5;ENSG00000095261|ENST00000210313|PSMD5;ENST00000373903.1_1_9:123586619-123589169:-|nuORF	nc|ENSG00000095261|Q16401-2|PSMD5	nc|ENSG00000095261|Q16401-2|PSMD5	MULTI-MSMS	A375_MHC_IP_R1	1	482.6263732910156	2	482.226225	962.437897	-0.39095	-0.00018853	-0.14314	-6.9027E-05	-0.5341	-0.00025755	482.2261842399325	52.49	0.65923	52.49	52.085	52.744	0					31	12	3	0	0	0	0.13845	1	18598	18598		43.772	14.691	1	4551500			50791	2037	36951	37250	49601	49601		74			-0.04482461833435991
SQDPTMIGV	9	Oxidation (M)	_SQDPTM(Oxidation (M))IGV_		SQDPTM(1)IGV		SQDPTM(73)IGV	0	0	1		nc|ENSG00000095261|Q16401-2|PSMD5;ENSG00000095261|ENST00000210313|PSMD5;ENST00000373903.1_1_9:123586619-123589169:-|nuORF	nc|ENSG00000095261|Q16401-2|PSMD5	nc|ENSG00000095261|Q16401-2|PSMD5	MULTI-MSMS	A375_MHC_IP_R2	2	482.6255187988281	2	482.226225	962.437897	-0.85761	-0.00041356	0.10378	5.0045E-05	-0.75383	-0.00036352	482.22626337505477	51.814	0.81393	52.566	52.169	52.983	0.75225					25	15	2	0	0	0	0.032333	1	19459	19459		72.968	33.018	1	3850700			50792	2037	36951	37250	49602	49602		74			-0.04482461833435991
SQDSIHSREPC	11	Unmodified	_SQDSIHSREPC_					0	0	0			REV__nc|ENSG00000120802|P42166|TMPO	REV__nc|ENSG00000120802|P42166|TMPO	MULTI-MSMS	A375_MHC_IP_R1	1	630.1776123046875	2	629.777676	1257.5408	-0.50655	-0.00031902	0.8849	0.00055729	0.37834	0.00023827	629.7782017350368	53.759	0.76156	53.759	53.352	54.113	0					26	14	2	0	0	0	0.54969	1	19147	19147		27.223	5.6331	1	2674700	+		50793	27197	36952	37251	49603	49603					-0.07767001112779326
SQDSKFQSS	9	Unmodified	_SQDSKFQSS_					0	0	0			REV__ENSG00000132357|ENST00000254691|CARD6	REV__ENSG00000132357|ENST00000254691|CARD6	MULTI-MSMS	A375_MHC_IP_R1	1	507.6614990234375	2	507.230353	1012.44615	-0.32534	-0.00016502	-0.18088	-9.175E-05	-0.50623	-0.00025677	507.2302038858458	34.837	2.5385	34.837	34.507	37.045	0					118	49	3	0	0	0	0.44024	2	11857	11532;11857		22.736	5.794	1	44441000	+		50794	18646	36953	37252	49604;49605	49605					-0.05957191592460731
SQDSKFQSS	9	Unmodified	_SQDSKFQSS_					0	0	0			REV__ENSG00000132357|ENST00000254691|CARD6	REV__ENSG00000132357|ENST00000254691|CARD6	MULTI-SECPEP	A375_MHC_IP_R1	1	507.98004150390625	2	507.230353	1012.44615	-0.32534	-0.00016502	-0.18088	-9.175E-05	-0.50623	-0.00025677	507.2302038858458	34.837	2.5385	34.837	34.507	37.045	0					118	49	3	0	0	0	0.11711	1	11790	11790		43.772	5.7984	1	44441000	+		50795	18646	36953	37252	49606	49606					-0.05957191592460731
SQDSKFQSS	9	Unmodified	_SQDSKFQSS_					0	0	0			REV__ENSG00000132357|ENST00000254691|CARD6	REV__ENSG00000132357|ENST00000254691|CARD6	MULTI-MSMS	A375_MHC_IP_R2	2	507.66131591796875	2	507.230353	1012.44615	-1.0389	-0.00052697	0.026242	1.3311E-05	-1.0127	-0.00051366	507.2302940721026	34.161	2.1775	34.914	34.399	36.576	0.75225					105	42	4	0	0	0	0.094655	1	12559	12559		51.63	11.672	1	40216000	+		50796	18646	36953	37252	49607	49607					-0.05957191592460731
SQDVLHSW	8	Unmodified	_SQDVLHSW_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	A375_MHC_IP_R2	2	486.633056640625	2	486.232699	970.450845	-0.7384	-0.00035903	1.9715	0.00095861	1.2331	0.00059958	486.23402423326104	55.876	0.76328	56.626	56.134	56.898	0.75014					20	14	2	0	0	0	0.36021	1	21122	21122		54.774	26.287	1	1758700			50797	9304	36954	37253	49608	49608					-0.03556262659037657
SQDVYKVSLR	10	Unmodified	_SQDVYKVSLR_					0	0	0		ENST00000502926.1_2_5:140806427-140807822:+|nuORF	ENST00000502926.1_2_5:140806427-140807822:+|nuORF	ENST00000502926.1_2_5:140806427-140807822:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	598.1806030273438	2	597.827495	1193.64044	-1.0239	-0.00061214	-0.39256	-0.00023468	-1.4165	-0.00084683	597.827463010364	37.433	0.56193	38.204	37.867	38.429	0.7709					13	10	2	0	0	0	0.93005	1	13576	13576		7.1017	2.2047	1	1767200			50798	12803	36955	37254	49609	49609					0.05136184563457391
SQDYEGGAY	9	Unmodified	_SQDYEGGAY_					0	0	0		ENST00000451653.5_2_3:42594755-42597434:-|nuORF	ENST00000451653.5_2_3:42594755-42597434:-|nuORF	ENST00000451653.5_2_3:42594755-42597434:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	495.6797790527344	2	495.195979	988.377405	-0.69445	-0.00034389	-0.089017	-4.4081E-05	-0.78346	-0.00038797	495.19589022413464	33.195	0.40807	33.947	33.737	34.146	0.75225					14	7	2	0	0	0	0.38603	1	11857	11857		25.399	0	1	1841800			50799	12075	36956	37255	49610	49610					-0.1172485589218013
SQEDRSCQAD	10	Unmodified	_SQEDRSCQAD_					0	0	0		ENST00000542977.5_2_11:71752138-71752177:-|nuORF	ENST00000542977.5_2_11:71752138-71752177:-|nuORF	ENST00000542977.5_2_11:71752138-71752177:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	570.199951171875	2	569.725109	1137.43566	-0.30195	-0.00017203	0.36668	0.00020891	0.064738	3.6883E-05	569.7252596948435	63.864	0.86539	63.864	63.427	64.292	0					34	16	3	0	0	0	0.70012	1	23051	23051		12.241	12.241	1	2113000			50800	13308	36957	37256	49611	49611					-0.12755542309196244
SQEEFLCMK	9	Unmodified	_SQEEFLCMK_					0	0	0		nc|ENSG00000082175|P06401-5|PGR;ENSG00000082175|ENST00000325455|PGR;nc|ENSG00000082175|P06401-4|PGR;nc|ENSG00000082175|P06401-3|PGR;nc|ENSG00000082175|P06401-2|PGR	nc|ENSG00000082175|P06401-5|PGR	nc|ENSG00000082175|P06401-5|PGR	MULTI-MSMS	A375_MHC_IP_R1	1	558.1478271484375	2	557.74901	1113.48347	-0.8694	-0.00048491	-0.84968	-0.00047391	-1.7191	-0.00095881	557.7485086947714	30.108	0.45237	30.108	29.899	30.351	0					18	8	3	0	0	0	0.29123	1	9537	9537		31.268	1.4278	1	8362200			50801	1754	36958	37257	49612	49612					-0.0687355964271319
SQEEFLCMK	9	Unmodified	_SQEEFLCMK_					0	0	0		nc|ENSG00000082175|P06401-5|PGR;ENSG00000082175|ENST00000325455|PGR;nc|ENSG00000082175|P06401-4|PGR;nc|ENSG00000082175|P06401-3|PGR;nc|ENSG00000082175|P06401-2|PGR	nc|ENSG00000082175|P06401-5|PGR	nc|ENSG00000082175|P06401-5|PGR	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	557.74901	1113.48347	-0.8694	-0.00048491	-0.84968	-0.00047391	-1.7191	-0.00095881	557.7485086947714	30.108	0.45237	30.108	29.899	30.351	0	-0.037602	-0.00019655	NaN	31.268	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8362200			50802	1754	36958	37257							-0.0687355964271319
SQEEKRLW	8	Unmodified	_SQEEKRLW_					0	0	0		ENST00000515594.5_1_6:64345874-64401682:+|nuORF	ENST00000515594.5_1_6:64345874-64401682:+|nuORF	ENST00000515594.5_1_6:64345874-64401682:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	538.6798706054688	2	538.28018	1074.54581	-0.67115	-0.00036127	-0.6388	-0.00034385	-1.31	-0.00070512	538.279884539745	63.954	1.0677	63.954	63.377	64.444	0					46	20	4	0	0	0	0.93661	1	23158	23158		21.747	21.747	1	3598300			50803	12952	36959	37258	49613	49613					0.011516708121462216
SQEEWQHMG	9	Unmodified	_SQEEWQHMG_					0	0	0		ENSG00000196597|ENST00000481138|ZNF782	ENSG00000196597|ENST00000481138|ZNF782	ENSG00000196597|ENST00000481138|ZNF782	MSMS	A375_MHC_IP_R2	2	566.145263671875	2	566.22983	1130.44511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.492	1	30.191	29.691	30.691	0.69872								0	0	0	0.11922	1	10301	10301		36.127	9.2434	1				50804	9063	36960	37259	49614	49614					-0.11489729233016988
SQEGPYMVS	9	Unmodified	_SQEGPYMVS_					0	0	0		nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB	nc|ENSG00000136068|O75369-6|FLNB	nc|ENSG00000136068|O75369-6|FLNB	MSMS	A375_MHC_IP_R1	1	499.1994934082031	2	499.2184	996.422247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.8	1	135.8	135.3	136.3	0								0	0	0	0.15486	1	52332	52332		7.2892	2.0586	1				50805	4749	36961	37260	49615	49615					-0.07610748350498397
SQEKFFQELFD	11	Unmodified	_SQEKFFQELFD_					0	0	0		ENSG00000162735|ENST00000368072|PEX19;ENST00000533104.1_1_1:160252288-160254904:-|nuORF;ENST00000524939.1_1_1:160252194-160254914:-|nuORF;ENST00000532508.5_1_1:160249625-160254863:-|nuORF	ENSG00000162735|ENST00000368072|PEX19	ENSG00000162735|ENST00000368072|PEX19	MULTI-MSMS	A375_MHC_IP_R1	1	710.2362670898438	2	709.33535	1416.65615	-0.66455	-0.00047139	-0.86427	-0.00061306	-1.5288	-0.0010844	709.3347220280217	32.101	0.46255	32.101	31.819	32.282	0					17	8	3	0	0	0	0.7342	1	10338	10338		4.897	1.6157	1	5483500			50806	6584	36962	37261	49616	49616					-0.035515737101377454
SQEKLIMNF	9	Unmodified	_SQEKLIMNF_					0	0	0			REV__ENSG00000138160|ENST00000260731|KIF11	REV__ENSG00000138160|ENST00000260731|KIF11	MULTI-SECPEP	A375_MHC_IP_R1	1	555.6854858398438	2	555.286617	1108.55868	-0.7571	-0.00042041	-0.86631	-0.00048105	-1.6234	-0.00090146	555.2860140441167	84.845	0.66461	84.845	84.545	85.21	0					33	12	4	0	0	0	0.30925	1	31063	31063		34.932	16.559	1	4853900	+		50807	19071	36963	37262	49617	49617					0.00874365880008554
SQELARGCP	9	Unmodified	_SQELARGCP_					0	0	0		ENST00000565302.5_1_16:733180-733532:-|nuORF	ENST00000565302.5_1_16:733180-733532:-|nuORF	ENST00000565302.5_1_16:733180-733532:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	481.1531982421875	2	480.732009	959.449465	0.0040477	1.9459E-06	-0.28522	-0.00013712	-0.28118	-0.00013517	480.73176792668914	45.23	0.20221	45.23	45.132	45.334	0					5	3	2	0	0	0	0.36834	1	15838	15838		26.268	0.86883	1	557980			50808	13545	36964	37263	49618	49618					-0.03188220019444543
SQELPAAGHTT	11	Unmodified	_SQELPAAGHTT_					0	0	0		ENST00000373203.8_1_9:130616800-130616983:-|nuORF	ENST00000373203.8_1_9:130616800-130616983:-|nuORF	ENST00000373203.8_1_9:130616800-130616983:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	555.6769409179688	2	556.272552	1110.53055	-0.39543	-0.00021997	-2.5213	-0.0014025	-2.9168	-0.0016225	556.7719494456273	37.609	0.46083	37.609	37.249	37.71	0					10	8	2	0	0	0	0.80621	1	12714	12714		24.991	4.5373	1	2299200			50809	11225	36965	37264	49619	49619					-0.020292407757096953
SQELRLASYL	10	Unmodified	_SQELRLASYL_					0	0	0		nc|ENSG00000173040|Q86UK5-2|EVC2;nc|ENSG00000173040|Q86UK5-3|EVC2;ENSG00000173040|ENST00000344408|EVC2	nc|ENSG00000173040|Q86UK5-2|EVC2	nc|ENSG00000173040|Q86UK5-2|EVC2	MULTI-MSMS	A375_MHC_IP_R1	1	394.2838439941406	3	393.883789	1178.62954	0.072424	2.8527E-05	0.46059	0.00018142	0.53302	0.00020995	393.8840484760302	25.229	0.50877	25.229	25.053	25.562	0					16	9	2	0	0	0	0.6502	1	7348	7348		24.882	12.009	1	6027200			50810	7761	36966	37265	49620	49620					0.04736782189183941
SQEYETSASL	10	Unmodified	_SQEYETSASL_					0	0	0			REV__SEC22A|p.D23E|1|0.36|ENSG00000121542|chr3:123209286-123209286|T/A|missense_variant	REV__SEC22A|p.D23E|1|0.36|ENSG00000121542|chr3:123209286-123209286|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	557.1400756835938	2	557.748576	1113.4826	-1.419	-0.00079146	0.23736	0.00013239	-1.1817	-0.00065907	557.7486076677072	29.484	0.75779	30.183	29.981	30.739	0.69872					28	14	4	0	0	0	0.59108	1	10299	10299		21.537	0	1	6410400	+		50811	27933	36967	37266	49621	49621					-0.0696035948642475
SQFEKWTI	8	Unmodified	_SQFEKWTI_					0	0	0			REV__ENSG00000081800|ENST00000194130|SLC13A1	REV__ENSG00000081800|ENST00000194130|SLC13A1	MULTI-SECPEP	A375_MHC_IP_R1	1	520.166748046875	2	519.766374	1037.5182	-0.42198	-0.00021933	0.16066	8.3507E-05	-0.26132	-0.00013582	519.7664634818256	62.93	0.66752	62.93	62.505	63.173	0					25	12	3	0	0	0	0.95424	1	22714	22714		19.257	19.257	1	3715300	+		50812	16779	36968	37267	49622	49622					0.0009376755190260155
SQFEKWTI	8	Unmodified	_SQFEKWTI_					0	0	0			REV__ENSG00000081800|ENST00000194130|SLC13A1	REV__ENSG00000081800|ENST00000194130|SLC13A1	MULTI-SECPEP	A375_MHC_IP_R2	2	520.1661987304688	2	519.766374	1037.5182	-0.86264	-0.00044837	-0.040849	-2.1232E-05	-0.90349	-0.0004696	519.7664548526456	62.139	0.65939	62.882	62.571	63.23	0.74263					20	12	2	0	0	0	0.9187	1	23547	23547		13.906	13.906	1	3215600	+		50813	16779	36968	37267	49623	49623					0.0009376755190260155
SQFPGAITL	9	Unmodified	_SQFPGAITL_					0	0	0		ENST00000571710.5_1_17:1945525-1946395:+|nuORF;ENST00000263083.10_1_17:1944800-1946395:+|nuORF;nc|ENSG00000262664|Q8WZ82|OVCA2	ENST00000571710.5_1_17:1945525-1946395:+|nuORF;nc|ENSG00000262664|Q8WZ82|OVCA2	nc|ENSG00000262664|Q8WZ82|OVCA2	MULTI-MSMS	A375_MHC_IP_R1	1	467.65570068359375	2	467.255643	932.496732	-0.13916	-6.5021E-05	-0.041617	-1.9446E-05	-0.18077	-8.4467E-05	467.25558336006515	106.02	1.1725	106.02	105.3	106.47	0					51	22	3	0	0	0	0.015356	1	38863	38863		89.401	21.32	1	2494900			50814	13611;14931	36969	37268	49624	49624					0.027783825231722403
SQFPGAITL	9	Unmodified	_SQFPGAITL_					0	0	0		ENST00000571710.5_1_17:1945525-1946395:+|nuORF;ENST00000263083.10_1_17:1944800-1946395:+|nuORF;nc|ENSG00000262664|Q8WZ82|OVCA2	ENST00000571710.5_1_17:1945525-1946395:+|nuORF;nc|ENSG00000262664|Q8WZ82|OVCA2	nc|ENSG00000262664|Q8WZ82|OVCA2	MULTI-SECPEP	A375_MHC_IP_R1	1	932.9281616210938	1	933.504009	932.496732	0.1	9.3351E-05	0.021672	2.0231E-05	0.12167	0.00011358	933.5041612295497	105.81	0.91425	105.81	105.3	106.21	0					27	17	2	0	0	0	0.11849	1	38820	38820		70.332	38.027	1	3013200			50815	13611;14931	36969	37268	49625	49625					0.027783825231722403
SQFPGAITL	9	Unmodified	_SQFPGAITL_					0	0	0		ENST00000571710.5_1_17:1945525-1946395:+|nuORF;ENST00000263083.10_1_17:1944800-1946395:+|nuORF;nc|ENSG00000262664|Q8WZ82|OVCA2	ENST00000571710.5_1_17:1945525-1946395:+|nuORF;nc|ENSG00000262664|Q8WZ82|OVCA2	nc|ENSG00000262664|Q8WZ82|OVCA2	MULTI-MSMS	A375_MHC_IP_R2	2	933.5609741210938	1	933.504009	932.496732	-0.20067	-0.00018733	-0.19075	-0.00017807	-0.39142	-0.0003654	933.5037453070464	104.82	0.9146	105.58	105.36	106.28	0.76308					26	17	2	0	0	0	0.04093	1	39682	39682		67.838	10.116	1	2832700			50816	13611;14931	36969	37268	49626	49626					0.027783825231722403
SQFPGAITL	9	Unmodified	_SQFPGAITL_					0	0	0		ENST00000571710.5_1_17:1945525-1946395:+|nuORF;ENST00000263083.10_1_17:1944800-1946395:+|nuORF;nc|ENSG00000262664|Q8WZ82|OVCA2	ENST00000571710.5_1_17:1945525-1946395:+|nuORF;nc|ENSG00000262664|Q8WZ82|OVCA2	nc|ENSG00000262664|Q8WZ82|OVCA2	MULTI-MSMS	A375_MHC_IP_R2	2	467.6552429199219	2	467.255643	932.496732	-0.58678	-0.00027418	0.10683	4.9918E-05	-0.47995	-0.00022426	467.2555917801942	105.14	1.3729	105.91	105.05	106.43	0.76308					56	26	3	0	0	0	0.0090297	1	39705	39705		99.755	27.833	1	2724200			50817	13611;14931	36969	37268	49627	49627					0.027783825231722403
SQFPKVRIL	9	Unmodified	_SQFPKVRIL_					0	0	0		ENSG00000136542|ENST00000259056|GALNT5;GALNT5|p.R561C|1|0.15|ENSG00000136542|chr2:157286074-157286074|C/T|missense_variant	ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	MULTI-MSMS	A375_MHC_IP_R1	1	363.9595947265625	3	363.225598	1086.65496	0.14318	5.2007E-05	-0.56476	-0.00020513	-0.42157	-0.00015313	363.22537648404347	61.201	0.61221	61.201	60.922	61.534	0					28	11	3	0	0	0	0.14858	2	22022	22022;22107		41.956	31.156	1	27555000			50818	4798	36970	37269	49628;49629	49628					0.11510301502289622
SQFPKVRIL	9	Unmodified	_SQFPKVRIL_					0	0	0		ENSG00000136542|ENST00000259056|GALNT5;GALNT5|p.R561C|1|0.15|ENSG00000136542|chr2:157286074-157286074|C/T|missense_variant	ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	MULTI-SECPEP	A375_MHC_IP_R1	1	544.7339477539062	2	544.334759	1086.65496	-0.60632	-0.00033004	-0.63996	-0.00034835	-1.2463	-0.00067839	544.3343942185703	61.21	0.45916	61.21	60.973	61.432	0					23	8	4	0	0	0	0.49205	1	22039	22039		21.537	14.814	1	10109000			50819	4798	36970	37269	49630	49630					0.11510301502289622
SQFPKVRIL	9	Unmodified	_SQFPKVRIL_					0	0	0		ENSG00000136542|ENST00000259056|GALNT5;GALNT5|p.R561C|1|0.15|ENSG00000136542|chr2:157286074-157286074|C/T|missense_variant	ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	MULTI-MSMS	A375_MHC_IP_R2	2	363.9596252441406	3	363.225598	1086.65496	-0.40853	-0.00014839	-0.017991	-6.5349E-06	-0.42653	-0.00015492	363.2255550783583	60.184	0.71259	60.931	60.653	61.366	0.74714					33	13	3	0	0	0	0.10622	2	22761	22761;22858		49.554	34.306	1	34433000			50820	4798	36970	37269	49631;49632	49631					0.11510301502289622
SQFPKVRIL	9	Unmodified	_SQFPKVRIL_					0	0	0		ENSG00000136542|ENST00000259056|GALNT5;GALNT5|p.R561C|1|0.15|ENSG00000136542|chr2:157286074-157286074|C/T|missense_variant	ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	MULTI-SECPEP	A375_MHC_IP_R2	2	544.7340087890625	2	544.334759	1086.65496	-1.1348	-0.00061773	-0.065487	-3.5647E-05	-1.2003	-0.00065338	544.334578649629	60.184	0.45869	60.931	60.704	61.162	0.74714					20	8	3	0	0	0	0.40377	1	22750	22750		28.495	18.421	1	9619400			50821	4798	36970	37269	49633	49633					0.11510301502289622
SQFPTPEAV	9	Unmodified	_SQFPTPEAV_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	A375_MHC_IP_R2	2	975.5299682617188	1	975.478188	974.470912	-0.0058897	-5.7453E-06	-0.15785	-0.00015398	-0.16374	-0.00015972	975.4778265302753	70.578	0.50672	71.312	70.946	71.453	0.73421					12	9	2	0	0	0	0.12748	1	26717	26717		45.74	23.993	1	2563000			50822	2857	36971	37270	49634	49634					-0.017345117190984638
SQFPTPEAV	9	Unmodified	_SQFPTPEAV_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MATCH	A375_MHC_IP_R1	1		1	975.478188	974.470912	0.27677	0.00026999	-0.46672	-0.00045527	-0.18994	-0.00018529	975.4778119622084	71.269	0.51188	71.269	70.953	71.465	0	-0.021846	-9.7035E-05	NaN	45.74	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2145100			50823	2857	36971	37270							-0.017345117190984638
SQFRQRTCRRK	11	Unmodified	_SQFRQRTCRRK_					0	0	0		BRWD1|p.S793F|1|0.37|ENSG00000185658|chr21:39247804-39247804|G/A|missense_variant	BRWD1|p.S793F|1|0.37|ENSG00000185658|chr21:39247804-39247804|G/A|missense_variant	BRWD1|p.S793F|1|0.37|ENSG00000185658|chr21:39247804-39247804|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	489.0107727050781	3	489.268754	1464.78443	-0.54836	-0.00026829	1.8924	0.00092589	1.344	0.0006576	489.2697285120698	133.56	0.4576	133.56	133.36	133.81	0					11	8	2	0	0	0	1.0005	1	51459	51459		1.1098	0	1	797090			50824	255	36972	37271	49635	49635					0.0706312784259353
SQFSGKITV	9	Unmodified	_SQFSGKITV_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-MSMS	A375_MHC_IP_R1	1	484.166015625	2	483.766374	965.518196	-0.26352	-0.00012748	-0.48771	-0.00023594	-0.75124	-0.00036342	483.7661577276748	46.149	0.60503	46.149	45.89	46.495	0					19	11	2	0	0	0	0.062639	1	16176	16176		59.368	19.419	1	3321900			50825	1613	36973	37272	49636	49636					0.03405767551896588
SQFSGKITV	9	Unmodified	_SQFSGKITV_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-SECPEP	A375_MHC_IP_R2	2	484.1659240722656	2	483.766374	965.518196	-0.65472	-0.00031673	-0.089698	-4.3393E-05	-0.74441	-0.00036012	483.7663693423309	45.301	0.50654	46.066	45.796	46.303	0.76519					18	9	3	0	0	0	0.10495	1	16916	16916		57.249	22.847	1	3861900			50826	1613	36973	37272	49637	49637					0.03405767551896588
SQGIPKQVS	9	Unmodified	_SQGIPKQVS_					0	0	0		ENSG00000169251|ENST00000351193|NMD3;ENST00000473909.5_1_3:160939100-160952664:+|nuORF	ENSG00000169251|ENST00000351193|NMD3	ENSG00000169251|ENST00000351193|NMD3	MSMS	A375_MHC_IP_R2	2	472.1657409667969	2	472.263999	942.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.723	1	27.383	26.883	27.883	0.65992								0	0	0	0.15135	1	9059	9059		19.362	3.5148	1				50827	7396	36974	37273	49638	49638					0.039888834091470926
SQGQSEPSF	9	Unmodified	_SQGQSEPSF_					0	0	0			REV__ENST00000377046.7_1_11:65479513-65479657:+|nuORF	REV__ENST00000377046.7_1_11:65479513-65479657:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	484.1659240722656	2	483.711796	965.40904	-0.68246	-0.00033011	-0.35989	-0.00017409	-1.0424	-0.0005042	483.7116860928972	45.121	0.81537	45.889	45.389	46.204	0.76799					25	15	2	0	0	0	0.25276	1	16916	16916		34.102	1.3168	1	1937900	+		50828	24155	36975	37274	49639	49639					-0.07504863138228757
SQGTFYFN	8	Unmodified	_SQGTFYFN_					0	0	0			REV__ENSG00000172954|ENST00000379509|LCLAT1	REV__ENSG00000172954|ENST00000379509|LCLAT1	MSMS	A375_MHC_IP_R1	1	482.1280822753906	2	482.213975	962.413397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.408	1	99.408	98.908	99.908	0								0	0	0	0.16876	1	36517	36517		19.257	2.3147	1		+		50829	21184	36976	37275	49640	49640					-0.06931353924665018
SQHTDEGHEY	10	Unmodified	_SQHTDEGHEY_					0	0	0			REV__ENSG00000130363|ENST00000367069|RSPH3	REV__ENSG00000130363|ENST00000367069|RSPH3	MULTI-MSMS	A375_MHC_IP_R1	1	401.89483642578125	3	401.495141	1201.46359	-0.087384	-3.5084E-05	-1.048	-0.00042077	-1.1354	-0.00045586	401.4950848069534	107.69	0.96715	107.69	107.19	108.15	0					50	18	4	0	0	0	0.69833	1	39464	39464		7.9454	2.5427	1	9229000	+		50830	18535	36977	37276	49641	49641					-0.1290789605743612
SQHVVTNY	8	Unmodified	_SQHVVTNY_					0	0	0		ENSG00000159433|ENST00000290607|STARD9;nc|ENSG00000159433|Q9P2P6-2|STARD9;ENST00000564158.5_1_15:42867889-42955097:+|nuORF;nc|ENSG00000159433|Q9P2P6-3|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	A375_MHC_IP_R1	1	474.6324768066406	2	474.232699	946.450845	-0.54357	-0.00025778	0.14871	7.0523E-05	-0.39486	-0.00018726	474.23272821869233	34.496	0.35453	34.496	34.253	34.608	0					11	6	2	0	0	0	0.62444	1	11364	11364		43.858	9.7559	1	10819000			50831	6371	36978	37277	49642	49642					-0.024522626590396612
SQHVVTNY	8	Unmodified	_SQHVVTNY_					0	0	0		ENSG00000159433|ENST00000290607|STARD9;nc|ENSG00000159433|Q9P2P6-2|STARD9;ENST00000564158.5_1_15:42867889-42955097:+|nuORF;nc|ENSG00000159433|Q9P2P6-3|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	A375_MHC_IP_R2	2	474.6322021484375	2	474.232699	946.450845	-0.92338	-0.0004379	0.037101	1.7595E-05	-0.88628	-0.0004203	474.2326603030306	34.145	1.1164	34.897	34.298	35.414	0.75225					33	21	2	0	0	0	0.62444	1	12094	12094		43.858	9.7559	1	24946000			50832	6371	36978	37277	49643	49643					-0.024522626590396612
SQIERPLADF	10	Unmodified	_SQIERPLADF_					0	0	0			REV__ENST00000467042.1_1_2:99182504-99185377:+|nuORF	REV__ENST00000467042.1_1_2:99182504-99185377:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	392.9327087402344	3	392.540022	1174.59824	-0.08337	-3.2726E-05	0.19682	7.7258E-05	0.11345	4.4532E-05	392.5400646003046	47.997	0.5041	48.758	48.429	48.933	0.76128					14	9	2	0	0	0	0.6502	1	18003	18003		14.957	5.7134	1	1160900	+		50833	16340	36979	37278	49644	49644					0.01792209155087221
SQIFCWPTI	9	Unmodified	_SQIFCWPTI_					0	0	0			REV__ENST00000392876.7_1_12:104208755-104208812:-|nuORF	REV__ENST00000392876.7_1_12:104208755-104208812:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	548.1702270507812	2	547.770603	1093.52665	-1.1351	-0.00062178	0.94085	0.00051537	-0.19426	-0.00010641	547.7711404716733	22.732	0.30591	23.362	23.215	23.521	0.63014					9	5	2	0	0	0	0.55471	1	7259	7259		17.113	1.2657	1	2067400	+		50834	24282	36980	37279	49645	49645					-0.016370018031238942
SQIHNPYSV	9	Unmodified	_SQIHNPYSV_					0	0	0		ENST00000244040.3_1_20:56937129-56937339:+|nuORF	ENST00000244040.3_1_20:56937129-56937339:+|nuORF	ENST00000244040.3_1_20:56937129-56937339:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1593017578125	2	522.759081	1043.50361	-0.43891	-0.00022944	0.21704	0.00011346	-0.22187	-0.00011598	522.7591550075784	31.591	0.40497	31.591	31.414	31.819	0					10	7	2	0	0	0	0.20645	1	10137	10137		32.786	1.5173	1	5652300			50835	10175	36981	37280	49646	49646					-0.016403045962533724
SQIHNPYSV	9	Unmodified	_SQIHNPYSV_					0	0	0		ENST00000244040.3_1_20:56937129-56937339:+|nuORF	ENST00000244040.3_1_20:56937129-56937339:+|nuORF	ENST00000244040.3_1_20:56937129-56937339:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1583862304688	2	522.759081	1043.50361	-0.60123	-0.0003143	0.19099	9.984E-05	-0.41024	-0.00021446	522.7588014682417	30.926	0.50611	31.644	31.417	31.923	0.71857					11	9	2	0	0	0	0.27742	1	10909	10909		23.79	0	1	5667200			50836	10175	36981	37280	49647	49647					-0.016403045962533724
SQIKWIKTL	9	Unmodified	_SQIKWIKTL_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MULTI-SECPEP	A375_MHC_IP_R2	2	373.29718017578125	3	372.89737	1115.67028	0.286	0.00010665	-0.53583	-0.00019981	-0.24983	-9.3162E-05	372.89719232661633	62.307	0.81023	63.05	62.774	63.584	0.74263					34	15	4	0	0	0	0.27114	1	23602	23602		45.74	0	1	6447500	+		50837	20249	36982	37281	49648	49648					0.1170716829947196
SQIPAQPSV	9	Unmodified	_SQIPAQPSV_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-SECPEP	A375_MHC_IP_R1	1	464.15032958984375	2	463.750724	925.486896	0.028298	1.3123E-05	-0.77334	-0.00035864	-0.74504	-0.00034551	463.7505498306437	48.096	0.40371	48.096	47.819	48.223	0					12	7	2	0	0	0	0.69179	1	16987	16987		21.59	1.1756	1	1946500			50838	3490	36983	37282	49649	49649					0.021171945178025453
SQIPGLSNL	9	Unmodified	_SQIPGLSNL_					0	0	0		ENST00000461741.1_1_7:48075147-48081223:+|nuORF;ENSG00000164746|ENST00000348904|C7orf57	ENST00000461741.1_1_7:48075147-48081223:+|nuORF	ENST00000461741.1_1_7:48075147-48081223:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	465.18231201171875	2	464.758549	927.502546	-0.13659	-6.3482E-05	0.024399	1.134E-05	-0.11219	-5.2143E-05	464.75843233871643	40.684	0.60851	40.684	40.304	40.913	0					14	11	2	0	0	0	0.47368	1	13842	13842		26.884	3.7352	1	1131400			50839	6874	36984	37283	49650	49650					0.03589481034839537
SQIPGLSNL	9	Unmodified	_SQIPGLSNL_					0	0	0		ENST00000461741.1_1_7:48075147-48081223:+|nuORF;ENSG00000164746|ENST00000348904|C7orf57	ENST00000461741.1_1_7:48075147-48081223:+|nuORF	ENST00000461741.1_1_7:48075147-48081223:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	464.758549	927.502546	-0.65877	-0.00030617	0.39879	0.00018534	-0.25998	-0.00012083	464.7589238408878	39.673	0.25576	40.447	40.32	40.575	0.77451	-0.11847	0.0001471	NaN	26.884	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1239800			50840	6874	36984	37283							0.03589481034839537
SQIRLRRRKRR	11	Unmodified	_SQIRLRRRKRR_					0	0	0		ENST00000260731.4_1_10:94353109-94353202:+|nuORF	ENST00000260731.4_1_10:94353109-94353202:+|nuORF	ENST00000260731.4_1_10:94353109-94353202:+|nuORF	MSMS	A375_MHC_IP_R1	1	762.88671875	2	762.99274	1523.97093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.58	1	123.58	123.08	124.08	0								0	0	0	0.16355	1	46204	46204		0.26902	0	1				50841	10270	36985	37284	49651	49651					0.22990112793263506
SQKGSINGITF	11	Unmodified	_SQKGSINGITF_					0	0	0		ZSCAN4|p.E255K|1|0.54|ENSG00000180532|chr19:57678366-57678366|G/A|missense_variant	ZSCAN4|p.E255K|1|0.54|ENSG00000180532|chr19:57678366-57678366|G/A|missense_variant	ZSCAN4|p.E255K|1|0.54|ENSG00000180532|chr19:57678366-57678366|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	576.7062377929688	2	576.306395	1150.59824	-0.14482	-8.3458E-05	-0.46901	-0.00027029	-0.61383	-0.00035375	576.3061286281708	73.158	0.81077	73.158	72.779	73.589	0					36	15	3	0	0	0	0.18643	1	26576	26576		55.503	3.8729	1	17705000			50842	30256	36986	37285	49652	49652					0.02896209155096585
SQKGSINGITF	11	Unmodified	_SQKGSINGITF_					0	0	0		ZSCAN4|p.E255K|1|0.54|ENSG00000180532|chr19:57678366-57678366|G/A|missense_variant	ZSCAN4|p.E255K|1|0.54|ENSG00000180532|chr19:57678366-57678366|G/A|missense_variant	ZSCAN4|p.E255K|1|0.54|ENSG00000180532|chr19:57678366-57678366|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	576.7058715820312	2	576.306395	1150.59824	-0.33747	-0.00019448	-0.35672	-0.00020558	-0.69419	-0.00040006	576.3061611403244	72.362	0.7083	73.098	72.721	73.429	0.73541					35	13	4	0	0	0	0.45155	1	27411	27411		34.932	7.3033	1	18529000			50843	30256	36986	37285	49653	49653					0.02896209155096585
SQKGSINGITF	11	Unmodified	_SQKGSINGITF_					0	0	0		ZSCAN4|p.E255K|1|0.54|ENSG00000180532|chr19:57678366-57678366|G/A|missense_variant	ZSCAN4|p.E255K|1|0.54|ENSG00000180532|chr19:57678366-57678366|G/A|missense_variant	ZSCAN4|p.E255K|1|0.54|ENSG00000180532|chr19:57678366-57678366|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	576.306395	1150.59824	-0.33747	-0.00019448	-0.35672	-0.00020558	-0.69419	-0.00040006	576.3061611403244	72.362	0.7083	73.098	72.721	73.429	0.73541	-0.030011	7.9132E-05	NaN	55.503	35	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18529000			50844	30256	36986	37285							0.02896209155096585
SQKIRSRYL	9	Unmodified	_SQKIRSRYL_					0	0	0		ENST00000588207.1_1_18:57637691-57638603:+|nuORF;ENST00000606261.1_1_7:26224125-26225400:+|nuORF;ENSG00000050344|ENST00000056233|NFE2L3	ENST00000588207.1_1_18:57637691-57638603:+|nuORF	ENST00000588207.1_1_18:57637691-57638603:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	384.9460144042969	3	384.22789	1149.66184	-0.16724	-6.4258E-05	0.17636	6.7761E-05	0.009116	3.5026E-06	384.2279126345431	40.191	0.30455	40.966	40.828	41.133	0.77451					8	5	2	0	0	0	0.7911	1	14922	14922		7.609	3.4194	1	1837700			50845	1229	36987	37286	49654	49654					0.09299614382848631
SQKNRVII	8	Unmodified	_SQKNRVII_					0	0	0			REV__ENST00000494187.1_1_7:30821792-30825370:+|nuORF	REV__ENST00000494187.1_1_7:30821792-30825370:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	479.69598388671875	2	479.295633	956.576714	-0.75466	-0.00036171	-0.43966	-0.00021073	-1.1943	-0.00057243	479.2960296204099	137.6	1.0272	137.6	137.13	138.15	0					24	19	2	0	0	0	0.77686	1	52969	52969		6.3541	0.59368	1	1058700	+		50846	25430	36988	37287	49655	49655					0.09668868917037798
SQKYKEGKF	9	Unmodified	_SQKYKEGKF_					0	0	0		ENST00000477675.1_1_22:22055420-22058252:-|nuORF;ENSG00000100027|ENST00000339468|YPEL1	ENST00000477675.1_1_22:22055420-22058252:-|nuORF	ENST00000477675.1_1_22:22055420-22058252:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	558.19775390625	2	557.798206	1113.58186	-0.78725	-0.00043913	-0.35314	-0.00019698	-1.1404	-0.00063611	557.7978779765795	39.882	0.30439	40.656	40.473	40.777	0.77451					7	5	2	0	0	0	0.76106	1	14782	14782		5.7319	4.0792	1	2860100			50847	2102	36989	37288	49656	49656					0.029611279890104925
SQKYKEGKF	9	Unmodified	_SQKYKEGKF_					0	0	0		ENST00000477675.1_1_22:22055420-22058252:-|nuORF;ENSG00000100027|ENST00000339468|YPEL1	ENST00000477675.1_1_22:22055420-22058252:-|nuORF	ENST00000477675.1_1_22:22055420-22058252:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	557.798206	1113.58186	-0.41452	-0.00023122	-0.11241	-6.2703E-05	-0.52694	-0.00029392	557.79818790646	40.669	0.2536	40.669	40.509	40.762	0	0.0062836	7.335E-05	NaN	5.7319	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1606300			50848	2102	36989	37288							0.029611279890104925
SQKYQKVR	8	Unmodified	_SQKYQKVR_					0	0	0			REV__ENST00000417982.6_1_17:53851072-53853458:+|nuORF	REV__ENST00000417982.6_1_17:53851072-53853458:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	518.3610229492188	2	518.79854	1035.58253	-0.58917	-0.00030566	-0.1493	-7.7457E-05	-0.73847	-0.00038312	519.2990894485517	134.37	0.25531	134.51	134.34	134.6	0.13901					6	4	2	0	0	0	0.972	1	52883	52883		0.6015	0	1	1097800	+		50849	19249	36990	37289	49657	49657					0.06615967428706426
SQLIFFVL	8	Unmodified	_SQLIFFVL_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23;nc|ENSG00000112282|Q9ULK4-6|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-SECPEP	A375_MHC_IP_R1	1	966.8742065429688	1	966.565881	965.558604	-0.0091715	-8.8648E-06	-3.7845	-0.0036579	-3.7936	-0.0036668	966.562628400285	94.338	0.35696	94.338	94.14	94.497	0					8	6	2	0	0	0	0.84748	1	34614	34614		28.487	10.352	1	778220			50850	3067	36991	37290	49658	49658					0.07444733942327275
SQLKHEIL	8	Unmodified	_SQLKHEIL_					0	0	0		nc|ENSG00000135976|A6QL64-3|ANKRD36;ENST00000421946.2_1_2:97879127-97913404:+|nuORF;nc|ENSG00000196912|Q8N2N9-3|ANKRD36B;nc|ENSG00000196912|Q8N2N9-2|ANKRD36B;ENSG00000196912|ENST00000359901|ANKRD36B;ENSG00000135976|ENST00000420699|ANKRD36	nc|ENSG00000135976|A6QL64-3|ANKRD36	nc|ENSG00000135976|A6QL64-3|ANKRD36	MULTI-SECPEP	A375_MHC_IP_R1	1	483.6504211425781	2	484.282192	966.549831	-0.21746	-0.00010531	-0.43471	-0.00021052	-0.65218	-0.00031584	484.28204784016253	37.174	0.40602	37.174	36.945	37.351	0					10	7	2	0	0	0	0.81376	1	12471	12471		32.305	3.8186	1	993700			50851	4737	36992	37291	49659	49659					0.06521760305861335
SQLKNREKAM	10	Unmodified	_SQLKNREKAM_					0	0	0		tr|U7SPH6|U7SPH6_FUSNUPeptidechainreleasefactor1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=prfAPE=3SV=1	tr|U7SPH6|U7SPH6_FUSNUPeptidechainreleasefactor1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=prfAPE=3SV=1	tr|U7SPH6|U7SPH6_FUSNUPeptidechainreleasefactor1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=prfAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	603.128173828125	2	602.826972	1203.63939	-0.37742	-0.00022752	-0.1369	-8.2529E-05	-0.51432	-0.00031005	603.3281310006516	90.044	2.13	90.776	89.584	91.714	0.7318					57	41	2	0	0	0	0.93407	1	34114	34114		11.495	7.5503	1	2102800			50852	29583	36993	37292	49660	49660					0.04571646922909167
SQLLLLARGF	10	Unmodified	_SQLLLLARGF_					0	0	0		ENSG00000221855|ENST00000408916|TAS2R41	ENSG00000221855|ENST00000408916|TAS2R41	ENSG00000221855|ENST00000408916|TAS2R41	MSMS	A375_MHC_IP_R1	1	373.2540588378906	3	373.229119	1116.66553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.986	1	34.986	34.486	35.486	0								0	0	0	0.15308	1	11593	11593		6.1918	0	1				50853	9667	36994	37293	49661	49661					0.11186284156701731
SQLLRQRF	8	Unmodified	_SQLLRQRF_					0	0	0			REV__ENSG00000182916|ENST00000332431|TCEAL7	REV__ENSG00000182916|ENST00000332431|TCEAL7	MULTI-SECPEP	A375_MHC_IP_R1	1	523.6748657226562	2	524.306532	1046.59851	-0.47563	-0.00024938	0.57869	0.00030341	0.10306	5.4036E-05	524.306970854093	31.44	0.50723	31.44	31.211	31.718	0					11	9	2	0	0	0	0.91495	1	10128	10128		12.532	1.7076	1	2241100	+		50854	21718	36995	37294	49662	49662					0.07707673665595394
SQLLRQRF	8	Unmodified	_SQLLRQRF_					0	0	0			REV__ENSG00000182916|ENST00000332431|TCEAL7	REV__ENSG00000182916|ENST00000332431|TCEAL7	MULTI-MATCH	A375_MHC_IP_R2	2		2	524.306532	1046.59851	-0.54215	-0.00028425	0.070063	3.6734E-05	-0.47209	-0.00024752	524.3067661645549	30.601	0.50449	31.319	31.114	31.618	0.71857	-0.060346	-0.00027522	NaN	12.532	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1773600	+		50855	21718	36995	37294							0.07707673665595394
SQLQRLLVD	9	Unmodified	_SQLQRLLVD_					0	0	0			REV__nc|ENSG00000080031|Q9HD43-3|PTPRH	REV__nc|ENSG00000080031|Q9HD43-3|PTPRH	MULTI-SECPEP	A375_MHC_IP_R2	2	536.7111206054688	2	536.31148	1070.60841	-0.82566	-0.00044281	0.19869	0.00010656	-0.62698	-0.00033625	536.3114901320731	132.04	1.6767	132.23	131.7	133.37	0.18953					60	32	2	0	0	0	0.78798	1	51943	51943		3.9444	3.5938	1	59107000	+		50856	16742	36996	37295	49663	49663					0.07592816880332975
SQLRHEQQRWE	11	Unmodified	_SQLRHEQQRWE_					0	0	0		nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18	nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	MSMS	A375_MHC_IP_R1	1	499.6324462890625	3	499.583284	1495.72802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.791	1	34.791	34.291	35.291	0								0	0	0	0.16203	1	11502	11502		4.1166	0	1				50857	2547	36997	37296	49664	49664					-1.2215130482218228E-05
SQLSLNFYTN	10	Unmodified	_SQLSLNFYTN_					0	0	0		ENSG00000119913|ENST00000646139|TECTB	ENSG00000119913|ENST00000646139|TECTB	ENSG00000119913|ENST00000646139|TECTB	MSMS	A375_MHC_IP_R2	2	593.7171630859375	2	593.790578	1185.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.134	1	28.813	28.313	29.313	0.67857								0	0	0	0.15353	1	9685	9685		9.3831	0.63772	1				50858	3634	36998	37297	49665	49665					-0.01875783598848102
SQLSYYYMGFY	11	Unmodified	_SQLSYYYMGFY_					0	0	0		nc|ENSG00000107669|O95260-2|ATE1;ENSG00000107669|ENST00000224652|ATE1	nc|ENSG00000107669|O95260-2|ATE1	nc|ENSG00000107669|O95260-2|ATE1	MULTI-MSMS	A375_MHC_IP_R1	1	711.7071533203125	2	711.307746	1420.60094	-0.6532	-0.00046462	-0.076944	-5.4731E-05	-0.73014	-0.00051936	711.3077162692668	34.328	0.505	34.328	34.103	34.608	0					27	9	4	0	0	0	0.54446	1	11295	11295		27.629	1.3607	1	13220000			50859	2748	36999	37298	49666	49666					-0.09253703502281496
SQLTQRGALF	10	Unmodified	_SQLTQRGALF_					0	0	0		ENSG00000102359|ENST00000373004|SRPX2;ENST00000481988.1_1_X:99901319-99905990:+|nuORF	ENSG00000102359|ENST00000373004|SRPX2	ENSG00000102359|ENST00000373004|SRPX2	MSMS	A375_MHC_IP_R1	1	374.3086853027344	3	374.208495	1119.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.337	1	19.337	18.837	19.837	0								0	0	0	0.1524	1	4720	4720		7.9454	0	1				50860	2375	37000	37299	49667	49667					0.04863932737544019
SQMHISLN	8	Unmodified	_SQMHISLN_					0	0	0			REV__nc|ENSG00000091656|Q86UP3|ZFHX4;REV__ENSG00000140836|ENST00000268489|ZFHX3;REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MSMS	A375_MHC_IP_R2	2	465.18194580078125	2	465.229102	928.443651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.437	1	40.211	39.711	40.711	0.77451								0	0	0	0.16876	1	14561	14561		23.148	3.7094	1		+		50861	16955;18931;19232	37001	37300	49668	49668					-0.023433185311318994
SQNESLVTL	9	Unmodified	_SQNESLVTL_					0	0	0		CD79B|p.A105V|1|0.33|ENSG00000007312|chr17:63930190-63930190|G/A|missense_variant	CD79B|p.A105V|1|0.33|ENSG00000007312|chr17:63930190-63930190|G/A|missense_variant	CD79B|p.A105V|1|0.33|ENSG00000007312|chr17:63930190-63930190|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	496.1579284667969	2	495.758746	989.50294	-0.37218	-0.00018451	0.81134	0.00040223	0.43916	0.00021772	495.7587829395825	68.247	0.96628	68.982	68.255	69.221	0.73511					42	18	4	0	0	0	0.037683	1	25839	25839		69.105	1.0242	1	3804000			50862	339	37002	37301	49669	49669					0.007768559640567219
SQNMWKRMWRT	11	Unmodified	_SQNMWKRMWRT_					0	0	0		ENST00000373491.3_1_6:37259064-37280717:+|nuORF	ENST00000373491.3_1_6:37259064-37280717:+|nuORF	ENST00000373491.3_1_6:37259064-37280717:+|nuORF	MSMS	A375_MHC_IP_R2	2	508.6508483886719	3	508.583462	1522.72856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.989	1	36.752	36.252	37.252	0.76338								0	0	0	0.16316	1	13080	13080		2.2527	0	1				50863	11231	37003	37302	49670	49670					-0.011898413892140525
SQNPKQEVHGP	11	Unmodified	_SQNPKQEVHGP_					0	0	0		BNC1|p.D275N|1|0.38|ENSG00000169594|chr15:83264428-83264428|C/T|missense_variant	BNC1|p.D275N|1|0.38|ENSG00000169594|chr15:83264428-83264428|C/T|missense_variant	BNC1|p.D275N|1|0.38|ENSG00000169594|chr15:83264428-83264428|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	610.703125	2	610.804551	1219.59455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.925	1	79.925	79.425	80.425	0								0	0	0	0.16108	1	29177	29177		13.042	3.6593	1				50864	241	37004	37303	49671	49671					-0.006464606187591926
SQNSFIKQY	9	Unmodified	_SQNSFIKQY_					0	0	0		ACIN1|p.P730Lfs*48|1|0.04|ENSG00000100813|chr14:23078259-23078260|-/ACTAAGCAGTCCTA|frameshift_variant;ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1	ACIN1|p.P730Lfs*48|1|0.04|ENSG00000100813|chr14:23078259-23078260|-/ACTAAGCAGTCCTA|frameshift_variant	ACIN1|p.P730Lfs*48|1|0.04|ENSG00000100813|chr14:23078259-23078260|-/ACTAAGCAGTCCTA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	558.1798095703125	2	557.780013	1113.54547	-0.70713	-0.00039442	0.25565	0.0001426	-0.45148	-0.00025183	557.7801504106055	39.94	0.30565	39.94	39.744	40.05	0					9	5	2	0	0	0	0.74169	1	13721	13721		16.149	10.852	1	2697800			50865	32	37005	37304	49672	49672					-0.006757489077244827
SQPDLLHQL	9	Unmodified	_SQPDLLHQL_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENST00000465402.1_1_X:53230656-53239709:-|nuORF;ENST00000492117.1_1_Y:21877982-21883284:-|nuORF;ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A;ENST00000544777.1_1_12:442481-443474:-|nuORF;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;ENST00000497100.5_1_X:53227940-53240837:-|nuORF;nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D	ENSG00000117139|ENST00000367265|KDM5B;ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000126012|P41229-2|KDM5C	MULTI-MSMS	A375_MHC_IP_R1	1	526.181640625	2	525.782556	1049.55056	-0.40983	-0.00021548	-0.044026	-2.3148E-05	-0.45386	-0.00023863	525.7824475548625	70.742	1.2276	70.742	69.983	71.211	0					44	23	3	0	0	0	0.047602	1	25632	25632		65.235	25.278	1	7346400			50866	4020;3458;1013;1565	37006	37305	49673	49673					0.027765549549030766
SQPDLLHQL	9	Unmodified	_SQPDLLHQL_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENST00000465402.1_1_X:53230656-53239709:-|nuORF;ENST00000492117.1_1_Y:21877982-21883284:-|nuORF;ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A;ENST00000544777.1_1_12:442481-443474:-|nuORF;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;ENST00000497100.5_1_X:53227940-53240837:-|nuORF;nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D	ENSG00000117139|ENST00000367265|KDM5B;ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000126012|P41229-2|KDM5C	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1828002929688	2	525.782556	1049.55056	-0.40068	-0.00021067	-0.5348	-0.00028119	-0.93548	-0.00049186	525.782445586538	69.938	0.9662	70.672	70.183	71.149	0.73421					45	18	4	0	0	0	0.061442	1	26434	26434		55.503	17.327	1	7919200			50867	4020;3458;1013;1565	37006	37305	49674	49674					0.027765549549030766
SQPEGFKEV	9	Unmodified	_SQPEGFKEV_					0	0	0		ENST00000504517.5_1_5:148386573-148411207:-|nuORF;ENST00000510779.1_1_5:148384276-148408226:-|nuORF;nc|ENSG00000169247|Q8TF17-5|SH3TC2;ENSG00000169247|ENST00000515425|SH3TC2	ENST00000504517.5_1_5:148386573-148411207:-|nuORF	ENST00000504517.5_1_5:148386573-148411207:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	511.1527404785156	2	510.753464	1019.49238	-0.77444	-0.00039555	0.59102	0.00030187	-0.18341	-9.3679E-05	510.7534634424737	30.792	0.80781	31.51	31.064	31.872	0.71857					34	15	3	0	0	0	0.30925	1	10770	10770		28.495	5.7582	1	5858000			50868	7395	37007	37306	49675	49675					-0.016591266903674295
SQPEGFKEV	9	Unmodified	_SQPEGFKEV_					0	0	0		ENST00000504517.5_1_5:148386573-148411207:-|nuORF;ENST00000510779.1_1_5:148384276-148408226:-|nuORF;nc|ENSG00000169247|Q8TF17-5|SH3TC2;ENSG00000169247|ENST00000515425|SH3TC2	ENST00000504517.5_1_5:148386573-148411207:-|nuORF	ENST00000504517.5_1_5:148386573-148411207:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	510.753464	1019.49238	-0.46427	-0.00023713	0.78979	0.00040339	0.32552	0.00016626	510.7536181471066	31.349	0.81056	31.349	30.959	31.769	0	-0.080696	7.0696E-05	NaN	28.495	41	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7338000			50869	7395	37007	37306							-0.016591266903674295
SQPHKWEHLYP	11	Unmodified	_SQPHKWEHLYP_					0	0	0			REV__ENST00000543087.5_1_11:18512432-18536353:-|nuORF	REV__ENST00000543087.5_1_11:18512432-18536353:-|nuORF	MSMS	A375_MHC_IP_R2	2	711.265380859375	2	711.351668	1420.68878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.672	1	70.406	69.906	70.906	0.73421								0	0	0	0.16152	1	26404	26404		10.8	1.4164	1		+		50870	16634	37008	37307	49676	49676					-0.0047332179660770635
SQPHQGST	8	Unmodified	_SQPHQGST_					0	0	0			REV__ENST00000311806.7_1_3:38294513-38294723:+|nuORF	REV__ENST00000311806.7_1_3:38294513-38294723:+|nuORF	MSMS	A375_MHC_IP_R1	1	421.1322326660156	2	421.193574	840.372594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.947	1	35.947	35.447	36.447	0								0	0	0	0.16876	1	11994	11994		10.824	1.4765	1		+		50871	23512	37009	37308	49677	49677					-0.05397695244278111
SQPLHDRV	8	Unmodified	_SQPLHDRV_					0	0	0		ENSG00000187626|ENST00000377294|ZKSCAN4	ENSG00000187626|ENST00000377294|ZKSCAN4	ENSG00000187626|ENST00000377294|ZKSCAN4	MULTI-SECPEP	A375_MHC_IP_R1	1	951.9017333984375	1	951.500655	950.493378	-0.10707	-0.00010187	1.5016	0.0014288	1.3945	0.0013269	951.5023667821009	80.496	0.60703	80.496	80.086	80.693	0					16	11	2	0	0	0	0.97021	1	29367	29367		15.847	2.8047	1	3061700			50872	8843	37010	37309	49678	49678					0.016151324691804803
SQPMKRLTL	9	Unmodified	_SQPMKRLTL_					0	0	0		nc|ENSG00000143839|P00797-2|REN;ENSG00000143839|ENST00000272190|REN	nc|ENSG00000143839|P00797-2|REN	nc|ENSG00000143839|P00797-2|REN	MULTI-SECPEP	A375_MHC_IP_R2	2	359.2766418457031	3	358.54271	1072.6063	-0.21418	-7.6793E-05	-0.31687	-0.00011361	-0.53105	-0.00019041	358.87676909556967	32.065	0.5075	32.802	32.401	32.909	0.73692					10	9	2	0	0	0	0.76187	1	11382	11382		7.609	0	1	1933200			50873	5440	37011	37310	49679	49679					0.07290064870880997
SQPTSTIIL	9	Unmodified	_SQPTSTIIL_					0	0	0		nc|ENSG00000164307|Q9NZ08-2|ERAP1;ENSG00000164307|ENST00000443439|ERAP1;ENST00000503921.5_1_5:96133011-96143586:-|nuORF	nc|ENSG00000164307|Q9NZ08-2|ERAP1	nc|ENSG00000164307|Q9NZ08-2|ERAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	959.4028930664062	1	959.540788	958.533512	-0.11073	-0.00010625	0.13806	0.00013248	0.027339	2.6233E-05	959.5408925907249	98.312	0.55896	99.072	98.742	99.301	0.75977					25	10	3	0	0	0	0.75164	1	37199	37199		5.7319	1.7875	1	11116000			50874	6821	37012	37311	49680	49680					0.052586343491157095
SQQLFEQSM	9	Unmodified	_SQQLFEQSM_					0	0	0			REV__ENSG00000165152|ENST00000374848|PGAP4	REV__ENSG00000165152|ENST00000374848|PGAP4	MULTI-MSMS	A375_MHC_IP_R1	1	549.7553100585938	2	549.250231	1096.48591	-0.65962	-0.0003623	-0.44473	-0.00024427	-1.1044	-0.00060657	549.2499529251161	33.099	0.40443	33.099	32.887	33.291	0					11	7	2	0	0	0	0.39434	1	10764	10764		24.991	3.2443	1	1931900	+		50875	20552	37013	37312	49681	49681					-0.05847387913399871
SQQLFEQSM	9	Unmodified	_SQQLFEQSM_					0	0	0			REV__ENSG00000165152|ENST00000374848|PGAP4	REV__ENSG00000165152|ENST00000374848|PGAP4	MSMS	A375_MHC_IP_R1	1	549.1665649414062	2	549.250231	1096.48591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.52	1	27.52	27.02	28.02	0								0	0	0	0.14357	1	8360	8360		28.495	2.2264	1		+		50876	20552	37013	37312	49682	49682					-0.05847387913399871
SQQLFEQSM	9	Unmodified	_SQQLFEQSM_					0	0	0			REV__ENSG00000165152|ENST00000374848|PGAP4	REV__ENSG00000165152|ENST00000374848|PGAP4	MSMS	A375_MHC_IP_R1	1	549.20361328125	2	549.250231	1096.48591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.719	1	27.719	27.219	28.219	0								0	0	0	0.15003	1	8447	8447		21.537	1.1224	1		+		50877	20552	37013	37312	49683	49683					-0.05847387913399871
SQQLFEQSM	9	Unmodified	_SQQLFEQSM_					0	0	0			REV__ENSG00000165152|ENST00000374848|PGAP4	REV__ENSG00000165152|ENST00000374848|PGAP4	MULTI-MSMS	A375_MHC_IP_R2	2	549.1669921875	2	549.250231	1096.48591	-0.9264	-0.00050882	-1.1307	-0.00062106	-2.0571	-0.0011299	549.2505305705678	26.934	0.46091	27.594	27.466	27.927	0.65992					13	8	2	0	0	0	0.2415	2	9161	9161;9229		34.932	7.2478	1	2588300	+		50878	20552	37013	37312	49684;49685	49684					-0.05847387913399871
SQQLFEQSM	9	Unmodified	_SQQLFEQSM_					0	0	0			REV__ENSG00000165152|ENST00000374848|PGAP4	REV__ENSG00000165152|ENST00000374848|PGAP4	MULTI-SECPEP	A375_MHC_IP_R2	2	549.6495361328125	2	549.250231	1096.48591	-0.81425	-0.00044723	-0.6989	-0.00038387	-1.5131	-0.00083109	549.2498360840495	32.35	0.35674	33.087	32.909	33.265	0.73692					9	6	2	0	0	0	0.41731	1	11544	11544		38.176	14.155	1	3514800	+		50879	20552	37013	37312	49686	49686					-0.05847387913399871
SQQLFEQSM	9	Unmodified	_SQQLFEQSM_					0	0	0			REV__ENSG00000165152|ENST00000374848|PGAP4	REV__ENSG00000165152|ENST00000374848|PGAP4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	549.250231	1096.48591	-0.65962	-0.0003623	-0.44473	-0.00024427	-1.1044	-0.00060657	549.2499529251161	33.099	0.40443	33.099	32.887	33.291	0	0.0059683	7.9037E-05	NaN	24.991	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1931900	+		50880	20552	37013	37312							-0.05847387913399871
SQQRRLVAI	9	Unmodified	_SQQRRLVAI_					0	0	0			REV__ENST00000251241.8_1_17:57648007-57650495:+|nuORF	REV__ENST00000251241.8_1_17:57648007-57650495:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	535.1951293945312	2	535.825089	1069.63563	-0.80198	-0.00042972	0.24796	0.00013287	-0.55402	-0.00029686	535.8254531030042	32.071	0.66536	32.071	31.819	32.485	0					27	12	3	0	0	0	0.75164	1	10239	10239		13.906	13.906	1	5284000	+		50881	23124	37014	37313	49687	49687					0.10359345211372784
SQRLPPPEKV	10	Unmodified	_SQRLPPPEKV_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;ENSG00000165671|ENST00000439151|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MSMS	A375_MHC_IP_R1	1	384.60137939453125	3	384.224146	1149.65061	0.65591	0.00025202	-0.46034	-0.00017687	0.19556	7.514E-05	384.2238966222035	39.008	0.91657	39.008	38.475	39.391	0					42	17	4	0	0	0	0.72061	1	13422	13422		3.0723	0	1	45417000			50882	6978	37015	37314	49688	49688					0.08176792288691104
SQRRRTLH	8	Unmodified	_SQRRRTLH_					0	0	0		nc|ENSG00000168081|Q13519-2|PNOC;ENSG00000168081|ENST00000301908|PNOC	nc|ENSG00000168081|Q13519-2|PNOC	nc|ENSG00000168081|Q13519-2|PNOC	MULTI-MSMS	A375_MHC_IP_R2	2	527.7045288085938	2	527.304855	1052.59516	-0.42079	-0.00022188	0.068212	3.5969E-05	-0.35258	-0.00018592	527.3048651997533	132.66	0.66028	132.83	132.64	133.3	0.16487					16	12	2	0	0	0	0.77717	1	52193	52193		5.2307	5.2307	1	6158500			50883	7263	37016	37315	49689	49689					0.07096423611619684
SQRSRELK	8	Unmodified	_SQRSRELK_					0	0	0			REV__ENSG00000111269|ENST00000228865|CREBL2	REV__ENSG00000111269|ENST00000228865|CREBL2	MULTI-SECPEP	A375_MHC_IP_R2	2	501.9972229003906	2	502.285797	1002.55704	-0.85401	-0.00042896	0.043356	2.1777E-05	-0.81065	-0.00040718	502.2857546268759	35.14	1.0111	35.903	35.475	36.486	0.76338					46	19	4	0	0	0	0.972	1	12854	12854		4.756	4.756	1	27301000	+		50884	17662	37017	37316	49690	49690					0.05586492906274998
SQSAKRRLLY	10	Unmodified	_SQSAKRRLLY_					0	0	0			REV__nc|ENSG00000047648|O43182-4|ARHGAP6;REV__nc|ENSG00000047648|O43182-3|ARHGAP6	REV__nc|ENSG00000047648|O43182-4|ARHGAP6	MULTI-SECPEP	A375_MHC_IP_R1	1	408.30670166015625	3	407.906928	1220.69895	-0.41497	-0.00016927	-0.80489	-0.00032832	-1.2199	-0.00049759	407.9065681381223	131.73	0.95909	131.73	131.53	132.49	0					38	18	4	0	0	0	0.94819	1	50865	50865		0.15932	0.15932	1	15186000	+		50885	16363;27098	37018	37317	49691	49691					0.09743285928607293
SQSAKRRLLY	10	Unmodified	_SQSAKRRLLY_					0	0	0			REV__nc|ENSG00000047648|O43182-4|ARHGAP6;REV__nc|ENSG00000047648|O43182-3|ARHGAP6	REV__nc|ENSG00000047648|O43182-4|ARHGAP6	MULTI-MATCH	A375_MHC_IP_R2	2		3	407.906928	1220.69895	0.038858	1.5851E-05	-1.0654	-0.00043457	-1.0265	-0.00041872	407.90643640828847	131.63	0.96442	131.82	131.54	132.51	0.18953	0.047484	-0.00015916	NaN	0.15932	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19080000	+		50886	16363;27098	37018	37317							0.09743285928607293
SQSHHARV	8	Unmodified	_SQSHHARV_					0	0	0		ENST00000445816.5_1_15:44085983-44086585:+|nuORF;ENST00000381359.5_2_15:44085983-44086238:+|nuORF	ENST00000445816.5_1_15:44085983-44086585:+|nuORF	ENST00000445816.5_1_15:44085983-44086585:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	461.636474609375	2	461.236107	920.457661	-0.44629	-0.00020585	0.72531	0.00033454	0.27902	0.00012869	461.236368383329	73.874	0.96767	74.612	74.143	75.111	0.73752					25	18	2	0	0	0	0.81376	1	28053	28053		32.305	32.305	1	2529000			50887	11371	37019	37318	49692	49692					-0.00574904987820446
SQSHHARV	8	Unmodified	_SQSHHARV_					0	0	0		ENST00000445816.5_1_15:44085983-44086585:+|nuORF;ENST00000381359.5_2_15:44085983-44086238:+|nuORF	ENST00000445816.5_1_15:44085983-44086585:+|nuORF	ENST00000445816.5_1_15:44085983-44086585:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	461.236107	920.457661	-0.2357	-0.00010871	0.38818	0.00017904	0.15248	7.0328E-05	461.236162551547	74.677	0.76218	74.677	74.247	75.009	0	0.032761	-0.00016593	NaN	32.305	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2259600			50888	11371	37019	37318							-0.00574904987820446
SQSLSLSTMQ	10	Unmodified	_SQSLSLSTMQ_					0	0	0		nc|ENSG00000100578|Q9BVV6-2|KIAA0586;nc|ENSG00000100578|Q9BVV6-4|KIAA0586;nc|ENSG00000100578|Q9BVV6|KIAA0586;ENSG00000100578|ENST00000652326|KIAA0586	nc|ENSG00000100578|Q9BVV6-2|KIAA0586	nc|ENSG00000100578|Q9BVV6-2|KIAA0586	MSMS	A375_MHC_IP_R2	2	541.2055053710938	2	541.263339	1080.51212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.209	1	39.983	39.483	40.483	0.77451								0	0	0	0.1502	1	14468	14468		17.443	1.2935	1				50889	2195	37020	37319	49693	49693					-0.024911187419320413
SQSPCYCHM	9	Unmodified	_SQSPCYCHM_					0	0	0		nc|ENSG00000157703|Q8N434-2|SVOPL;ENSG00000157703|ENST00000674285|SVOPL	nc|ENSG00000157703|Q8N434-2|SVOPL	nc|ENSG00000157703|Q8N434-2|SVOPL	MULTI-SECPEP	A375_MHC_IP_R2	2	528.0296630859375	2	528.190805	1054.36706	-0.59462	-0.00031407	-0.96371	-0.00050902	-1.5583	-0.00082309	528.1901066728876	45.188	0.45569	45.954	45.746	46.201	0.76518					11	8	2	0	0	0	0.77901	1	16899	16899		5.7319	5.7319	1	1128100			50890	6262	37021	37320	49694	49694					-0.15795201414289295
SQSVHVIVK	9	Unmodified	_SQSVHVIVK_					0	0	0		DSCAM|p.T592I|1|0.07|ENSG00000171587|chr21:40338109-40338109|G/A|missense_variant	DSCAM|p.T592I|1|0.07|ENSG00000171587|chr21:40338109-40338109|G/A|missense_variant	DSCAM|p.T592I|1|0.07|ENSG00000171587|chr21:40338109-40338109|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	499.4603271484375	2	498.795466	995.57638	-0.33177	-0.00016548	0.5682	0.00028342	0.23644	0.00011793	498.7958577412495	52.179	0.50778	52.179	51.879	52.387	0					15	9	2	0	0	0	0.63622	1	18575	18575		19.362	9.288	1	1194300			50891	807	37022	37321	49695	49695					0.07841449197189831
SQSVSHFQY	9	Unmodified	_SQSVSHFQY_					0	0	0			REV__nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	REV__nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	542.1771240234375	2	541.748713	1081.48287	-0.80138	-0.00043415	0.61104	0.00033103	-0.19034	-0.00010312	541.7487182024901	39.567	0.65854	39.567	39.34	39.999	0					25	12	3	0	0	0	0.65246	1	13646	13646		15.847	0	1	4644000	+		50892	19250	37023	37322	49696	49696					-0.054608949758858216
SQTPVLREL	9	Unmodified	_SQTPVLREL_					0	0	0		nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16;nc|ENSG00000156256|Q9Y5T5-5|USP16;ENST00000474835.5_1_21:30400234-30414894:+|nuORF	nc|ENSG00000156256|Q9Y5T5-3|USP16	nc|ENSG00000156256|Q9Y5T5-3|USP16	MULTI-SECPEP	A375_MHC_IP_R1	1	522.1978759765625	2	521.798206	1041.58186	-0.45215	-0.00023593	0.13234	6.9053E-05	-0.31981	-0.00016688	521.7982688610774	54.682	0.6097	54.682	54.415	55.025	0					20	11	2	0	0	0	0.53098	1	19508	19508		27.223	4.487	1	6099900			50893	6183	37024	37323	49697	49697					0.06273127989015848
SQTPVLREL	9	Unmodified	_SQTPVLREL_					0	0	0		nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16;nc|ENSG00000156256|Q9Y5T5-5|USP16;ENST00000474835.5_1_21:30400234-30414894:+|nuORF	nc|ENSG00000156256|Q9Y5T5-3|USP16	nc|ENSG00000156256|Q9Y5T5-3|USP16	MULTI-SECPEP	A375_MHC_IP_R2	2	522.197021484375	2	521.798206	1041.58186	-1.0531	-0.00054952	-0.28825	-0.00015041	-1.3414	-0.00069993	521.7979922930904	53.742	0.61676	54.493	54.198	54.815	0.75105					19	11	2	0	0	0	0.43207	1	20276	20276		27.223	10.11	1	5320300			50894	6183	37024	37323	49698	49698					0.06273127989015848
SQTQKAKFS	9	Unmodified	_SQTQKAKFS_					0	0	0		ENSG00000111404|ENST00000538724|RERGL;nc|ENSG00000111404|Q9H628|RERGL	ENSG00000111404|ENST00000538724|RERGL	ENSG00000111404|ENST00000538724|RERGL	MULTI-MSMS	A375_MHC_IP_R1	1	1024.5430908203125	1	1024.54219	1023.53491	0.27733	0.00028413	-0.23197	-0.00023767	0.045354	4.6467E-05	1024.5418834554075	40.634	0.60683	40.634	40.406	41.013	0					27	11	3	0	0	0	0.65748	1	13891	13891		10.8	5.9025	1	23293000			50895	2991	37025	37324	49699	49699					0.02408268437852712
SQTYYRIFT	9	Unmodified	_SQTYYRIFT_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-SECPEP	A375_MHC_IP_R1	1	393.264892578125	3	393.532868	1177.57677	0.13907	5.473E-05	0.66146	0.00026031	0.80053	0.00031504	393.5331150364616	35.038	0.30616	35.038	34.912	35.218	0					8	5	2	0	0	0	0.69507	1	11618	11618		9.544	4.8281	1	1877400			50896	1649	37026	37325	49700	49700					-0.004911758736398042
SQVLHEDGP	9	Unmodified	_SQVLHEDGP_					0	0	0		nc|ENSG00000142675|Q969H4|CNKSR1;ENSG00000142675|ENST00000361530|CNKSR1	nc|ENSG00000142675|Q969H4|CNKSR1	nc|ENSG00000142675|Q969H4|CNKSR1	MULTI-SECPEP	A375_MHC_IP_R1	1	491.6351623535156	2	491.235439	980.456324	-0.64552	-0.0003171	0.32862	0.00016143	-0.3169	-0.00015567	491.2354317230474	30.443	0.50325	30.443	30.251	30.754	0					14	9	2	0	0	0	0.47368	1	9678	9678		26.884	2.8631	1	2097200			50897	5325	37027	37326	49701	49701					-0.034685838672317004
SQWDSPMRV	9	Oxidation (M)	_SQWDSPM(Oxidation (M))RV_		SQWDSPM(1)RV		SQWDSPM(61)RV	0	0	1		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-MSMS	A375_MHC_IP_R1	1	561.6554565429688	2	561.255848	1120.49714	-0.26057	-0.00014625	-0.25421	-0.00014268	-0.51478	-0.00028892	561.2556749283013	35.798	0.51078	35.798	35.522	36.033	0					25	9	3	0	0	0	0.058226	1	11910	11910		61.09	31.249	1	7845300			50898	4421	37028	37327	49702	49702		230			-0.05828565819274445
SQWDSPMRV	9	Oxidation (M)	_SQWDSPM(Oxidation (M))RV_		SQWDSPM(1)RV		SQWDSPM(78)RV	0	0	1		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-MSMS	A375_MHC_IP_R2	2	561.6555786132812	2	561.255848	1120.49714	-0.82907	-0.00046532	0.033896	1.9024E-05	-0.79517	-0.0004463	561.255966533731	35.09	0.65683	35.853	35.576	36.233	0.76338					28	12	3	0	0	0	0.026372	1	12696	12696		78.06	48.22	1	5310500			50899	4421	37028	37327	49703	49703		230			-0.05828565819274445
SQWDSPMRV	9	Unmodified	_SQWDSPMRV_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-MSMS	A375_MHC_IP_R1	1	553.6576538085938	2	553.258391	1104.50223	-0.61388	-0.00033964	-0.35092	-0.00019415	-0.96481	-0.00053379	553.2583780554237	58.845	0.40786	58.845	58.633	59.041	0					16	7	3	0	0	0	0.0099737	1	21165	21165		96.367	61.965	1	2663900			50900	4421	37028	37328	49704	49704					-0.045842619566428766
SQWDSPMRV	9	Unmodified	_SQWDSPMRV_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-MSMS	A375_MHC_IP_R2	2	553.657958984375	2	553.258391	1104.50223	-1.0553	-0.00058385	-0.11612	-6.4247E-05	-1.1714	-0.0006481	553.2583340346448	58.118	0.40408	58.867	58.679	59.083	0.74895					14	7	3	0	0	0	0.073067	1	22002	22002		55.503	31.482	1	3132900			50901	4421	37028	37328	49705	49705					-0.045842619566428766
SQWGQWSQVY	10	Unmodified	_SQWGQWSQVY_					0	0	0		ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	MSMS	A375_MHC_IP_R1	1	634.7117919921875	2	634.78837	1267.56219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.951	1	42.951	42.451	43.451	0								0	0	0	0.14686	1	14908	14908		23.79	1.0535	1				50902	5935	37029	37329	49706	49706					-0.06089248021748972
SQWQRQRWSCR	11	Unmodified	_SQWQRQRWSCR_					0	0	0		ENST00000381679.8_1_21:34923155-34923236:+|nuORF	ENST00000381679.8_1_21:34923155-34923236:+|nuORF	ENST00000381679.8_1_21:34923155-34923236:+|nuORF	MSMS	A375_MHC_IP_R1	1	507.6298522949219	3	507.581109	1519.7215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.793	1	34.793	34.293	35.293	0								0	0	0	0.16309	1	11503	11503		2.6312	0	1				50903	11378	37030	37330	49707	49707					-0.017574379454345035
SQYGTQPQQY	10	Unmodified	_SQYGTQPQQY_					0	0	0		nc|ENSG00000135870|Q5TC82-2|RC3H1;ENSG00000135870|ENST00000367696|RC3H1	nc|ENSG00000135870|Q5TC82-2|RC3H1	nc|ENSG00000135870|Q5TC82-2|RC3H1	MULTI-SECPEP	A375_MHC_IP_R1	1	599.662109375	2	600.27001	1198.52547	-0.10292	-6.1777E-05	-0.66847	-0.00040126	-0.77139	-0.00046304	600.2696445235082	48.103	0.50543	48.103	47.87	48.375	0					23	9	3	0	0	0	0.8866	1	16960	16960		19.362	1.2156	1	6312400			50904	14618	37031	37331	49708	49708					-0.06585544638323881
SQYKTQTEY	9	Unmodified	_SQYKTQTEY_					0	0	0			REV__nc|ENSG00000147548|Q9BZ95-3|NSD3	REV__nc|ENSG00000147548|Q9BZ95-3|NSD3	MULTI-MSMS	A375_MHC_IP_R1	1	574.6666259765625	2	574.266936	1146.51932	-0.50955	-0.00029262	0.1755	0.00010078	-0.33405	-0.00019183	574.2669306582612	36.618	0.40617	36.618	36.339	36.745	0					11	7	2	0	0	0	0.27064	1	12261	12261		32.786	2.1491	1	3646800	+		50905	19594	37032	37332	49709	49709					-0.04808062869847163
SQYPTINSY	9	Unmodified	_SQYPTINSY_					0	0	0			REV__nc|ENSG00000156030|Q6PJG2|MIDEAS	REV__nc|ENSG00000156030|Q6PJG2|MIDEAS	MULTI-SECPEP	A375_MHC_IP_R2	2	537.14990234375	2	536.750921	1071.48729	-0.80043	-0.00042963	0.42833	0.0002299	-0.3721	-0.00019973	536.7509003598344	92.915	0.80973	93.654	93.089	93.899	0.73902					26	15	2	0	0	0	0.10103	1	35308	35308		71.922	18.089	1	1730500	+		50906	19958	37033	37333	49710	49710					-0.04559430552990307
SQYQGVVVY	9	Unmodified	_SQYQGVVVY_					0	0	0		ENSG00000132603|ENST00000254940|NIP7;ENST00000565034.1_1_16:69373956-69375289:+|nuORF	ENSG00000132603|ENST00000254940|NIP7	ENSG00000132603|ENST00000254940|NIP7	MULTI-SECPEP	A375_MHC_IP_R1	1	522.163818359375	2	521.763832	1041.51311	-0.48457	-0.00025283	-0.29823	-0.00015561	-0.7828	-0.00040844	521.7636401105966	68.743	0.60709	68.743	68.412	69.02	0					21	11	3	0	0	0	0.16764	1	24921	24921		60.074	20.117	1	2918100			50907	4425	37034	37334	49711	49711					-0.0059853631069017865
SQYSGQLHEV	10	Unmodified	_SQYSGQLHEV_					0	0	0		ENSG00000144645|ENST00000396556|OSBPL10;ENST00000466604.5_1_3:31863684-32001816:-|nuORF	ENSG00000144645|ENST00000396556|OSBPL10	ENSG00000144645|ENST00000396556|OSBPL10	MULTI-MSMS	A375_MHC_IP_R1	1	574.6721801757812	2	574.272552	1146.53055	-0.45647	-0.00026214	0.1304	7.4883E-05	-0.32607	-0.00018725	574.2723375369783	30.78	0.50668	30.78	30.653	31.16	0					15	9	2	0	0	0	0.2515	1	9846	9846		43.982	4.0321	1	2439400			50908	5500	37035	37335	49712	49712					-0.0368524077573511
SQYSGQLHEV	10	Unmodified	_SQYSGQLHEV_					0	0	0		ENSG00000144645|ENST00000396556|OSBPL10;ENST00000466604.5_1_3:31863684-32001816:-|nuORF	ENSG00000144645|ENST00000396556|OSBPL10	ENSG00000144645|ENST00000396556|OSBPL10	MULTI-MSMS	A375_MHC_IP_R2	2	574.6719360351562	2	574.272552	1146.53055	-0.3358	-0.00019284	-0.18429	-0.00010583	-0.52009	-0.00029867	574.2724316493227	30.155	0.4569	30.874	30.708	31.165	0.71857					17	8	3	0	0	0	0.17879	1	10600	10600		51.415	22.334	1	3272700			50909	5500	37035	37335	49713	49713					-0.0368524077573511
SRAAKSLYVP	10	Unmodified	_SRAAKSLYVP_					0	0	0			REV__ADSS|p.S171L|1|0.61|ENSG00000035687|chr1:244424022-244424022|G/A|missense_variant	REV__ADSS|p.S171L|1|0.61|ENSG00000035687|chr1:244424022-244424022|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	364.6048889160156	3	364.545108	1090.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.532	1	43.532	43.032	44.032	0								0	0	0	0.14741	1	15140	15140		14.957	0.73899	1		+		50910	15339	37036	37336	49714	49714					0.07181120742939129
SRADLIKQY	9	Unmodified	_SRADLIKQY_					0	0	0		nc|ENSG00000103160|Q3SXM5-2|HSDL1;ENSG00000103160|ENST00000219439|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	MULTI-SECPEP	A375_MHC_IP_R1	1	547.7033081054688	2	547.303655	1092.59276	-0.88867	-0.00048637	-0.18882	-0.00010334	-1.0775	-0.00058972	547.3035407608234	29.924	0.80006	29.924	29.703	30.503	0					37	15	4	0	0	0	0.035151	1	9402	9402		84.522	44.565	1	145220000			50911	2427	37037	37337	49715	49715					0.050165303632638825
SRADLIKQY	9	Unmodified	_SRADLIKQY_					0	0	0		nc|ENSG00000103160|Q3SXM5-2|HSDL1;ENSG00000103160|ENST00000219439|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	MULTI-MSMS	A375_MHC_IP_R2	2	547.7030029296875	2	547.303655	1092.59276	-1.6602	-0.00090862	0.35024	0.00019169	-1.3099	-0.00071693	547.3038121628807	29.156	0.70333	29.855	29.681	30.385	0.69872					41	13	4	0	0	0	0.01185	1	10138	10138		93.938	45.592	1	114440000			50912	2427	37037	37337	49716	49716					0.050165303632638825
SRADLIKQY	9	Unmodified	_SRADLIKQY_					0	0	0		nc|ENSG00000103160|Q3SXM5-2|HSDL1;ENSG00000103160|ENST00000219439|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	MULTI-SECPEP	A375_MHC_IP_R2	2	364.60137939453125	3	365.204862	1092.59276	-0.8365	-0.00030549	0.68857	0.00025147	-0.14793	-5.4026E-05	365.2050740774427	29.171	1.1043	29.87	29.534	30.638	0.69872					44	21	3	0	0	0	0.048303	1	10132	10132		77.049	41.436	1	104690000			50913	2427	37037	37337	49717	49717					0.050165303632638825
SRAFRPFTF	9	Unmodified	_SRAFRPFTF_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|181|1|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|181|1|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|181|1|anti-sense	MULTI-SECPEP	A375_MHC_IP_R1	1	377.2698669433594	3	376.869814	1127.58761	0.14841	5.5931E-05	0.51186	0.00019291	0.66027	0.00024884	376.8699428025226	66.357	0.86402	66.357	65.972	66.836	0					32	16	3	0	0	0	0.54812	1	24015	24015		23.801	0	1	4329700			50914	14275	37038	37338	49718	49718					0.028922712913072246
SRAIHVHQF	9	Unmodified	_SRAIHVHQF_					0	0	0		ENSG00000109610|ENST00000382120|SOD3	ENSG00000109610|ENST00000382120|SOD3	ENSG00000109610|ENST00000382120|SOD3	MULTI-MSMS	A375_MHC_IP_R1	1	365.9333801269531	3	365.533313	1093.57811	0.38296	0.00013999	-0.23035	-8.4201E-05	0.15261	5.5785E-05	365.86753568422944	20.793	0.4099	20.793	20.536	20.946	0					11	7	2	0	0	0	0.62707	1	5408	5408		13.519	8.2218	1	1527800			50915	2878	37039	37339	49719	49719					0.03506503005792183
SRALATLV	8	Unmodified	_SRALATLV_					0	0	0			REV__chr5:114433893-114463049|128|16.21|0.03|9.33|+|0|TE_info:LTR12C,LTR12C_dup959,ERV1,LTR,donor,+,114432500,114433893|None,KCNN2|1	REV__chr5:114433893-114463049|128|16.21|0.03|9.33|+|0|TE_info:LTR12C,LTR12C_dup959,ERV1,LTR,donor,+,114432500,114433893|None,KCNN2|1	MULTI-SECPEP	A375_MHC_IP_R1	1	415.6426086425781	2	415.758352	829.502152	0.52465	0.00021813	-0.37133	-0.00015438	0.15332	6.3744E-05	415.7580639432082	42.917	0.30476	42.917	42.79	43.095	0					7	5	2	0	0	0	0.93661	1	14926	14926		10.824	0	1	1608500	+		50916	15755	37040	37340	49720	49720					0.08058106105659135
SRASPVRLL	9	Unmodified	_SRASPVRLL_					0	0	0		ENSG00000141873|ENST00000269740|SLC39A3	ENSG00000141873|ENST00000269740|SLC39A3	ENSG00000141873|ENST00000269740|SLC39A3	MULTI-SECPEP	A375_MHC_IP_R1	1	500.2086486816406	2	499.808908	997.603263	-0.37813	-0.00018899	0.027409	1.3699E-05	-0.35072	-0.00017529	499.8089268385156	39.416	0.60792	39.416	39.136	39.744	0					25	11	3	0	0	0	0.30925	1	13427	13427		34.932	14.518	1	25141000			50917	5276	37041	37341	49721	49721					0.10436557808372982
SRASPVRLL	9	Unmodified	_SRASPVRLL_					0	0	0		ENSG00000141873|ENST00000269740|SLC39A3	ENSG00000141873|ENST00000269740|SLC39A3	ENSG00000141873|ENST00000269740|SLC39A3	MULTI-SECPEP	A375_MHC_IP_R2	2	500.2087707519531	2	499.808908	997.603263	-0.92649	-0.00046307	0.20063	0.00010028	-0.72585	-0.00036279	499.8089698233697	38.35	0.55832	39.125	38.843	39.401	0.77451					25	10	4	0	0	0	0.50484	1	14088	14088		34.932	10.722	1	19337000			50918	5276	37041	37341	49722	49722					0.10436557808372982
SRAVGLPL	8	Unmodified	_SRAVGLPL_					0	0	0		nc|ENSG00000250510|Q16538-2|GPR162;ENSG00000250510|ENST00000311268|GPR162	nc|ENSG00000250510|Q16538-2|GPR162	nc|ENSG00000250510|Q16538-2|GPR162	MULTI-SECPEP	A375_MHC_IP_R2	2	405.9753112792969	2	406.75307	811.491587	0.083281	3.3875E-05	-0.050949	-2.0724E-05	0.032332	1.3151E-05	406.75297689405085	42.674	0.50712	43.446	43.167	43.674	0.7724					16	9	2	0	0	0	0.972	1	15954	15954		3.5965	2.995	1	3027800			50919	9847	37042	37342	49723	49723					0.07830123451230975
SRAVGLPL	8	Unmodified	_SRAVGLPL_					0	0	0		nc|ENSG00000250510|Q16538-2|GPR162;ENSG00000250510|ENST00000311268|GPR162	nc|ENSG00000250510|Q16538-2|GPR162	nc|ENSG00000250510|Q16538-2|GPR162	MULTI-MATCH	A375_MHC_IP_R1	1		2	406.75307	811.491587	-0.22403	-9.1127E-05	0.54522	0.00022177	0.32118	0.00013064	406.7531984545926	43.718	0.66054	43.718	43.249	43.909	0	0.13576	0.00026746	NaN	3.5965	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2079800			50920	9847	37042	37342							0.07830123451230975
SRCCCRHG	8	Unmodified	_SRCCCRHG_					0	0	0		ENST00000331113.8_1_7:119913735-119913927:+|nuORF	ENST00000331113.8_1_7:119913735-119913927:+|nuORF	ENST00000331113.8_1_7:119913735-119913927:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	921.7601318359375	1	921.360021	920.352744	-0.43984	-0.00040525	0.68092	0.00062737	0.24108	0.00022212	921.3605369054965	146.23	0.44965	146.23	146.04	146.49	0					90	47	2	0	0	0	0.77861	1	55915	55915		0	0	1	285740			50921	10766	37043	37343	49724	49724					-0.11061809051898308
SRCCCRHG	8	Unmodified	_SRCCCRHG_					0	0	0		ENST00000331113.8_1_7:119913735-119913927:+|nuORF	ENST00000331113.8_1_7:119913735-119913927:+|nuORF	ENST00000331113.8_1_7:119913735-119913927:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	921.360021	920.352744	-0.12828	-0.00011819	0.78451	0.00072282	0.65623	0.00060462	921.3606731136849	146.25	0.44826	146.27	146.12	146.57	0.019913	0.02311	4.4221E-05	NaN	0	99	55	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212230			50922	10766	37043	37343							-0.11061809051898308
SRDGCCCG	8	Unmodified	_SRDGCCCG_					0	0	0			REV__IL4R|p.P742S|1|0.18|ENSG00000077238|chr16:27363576-27363576|C/T|missense_variant	REV__IL4R|p.P742S|1|0.18|ENSG00000077238|chr16:27363576-27363576|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	401.2418212890625	2	400.62784	799.241128	-0.20397	-8.1715E-05	-0.86693	-0.00034732	-1.0709	-0.00042903	400.6273891002235	62.189	0.4605	62.189	61.943	62.403	0					11	8	2	0	0	0	0.972	1	22516	22516		0	0	1	1053500	+		50923	16691	37044	37344	49725	49725					-0.16652288199691156
SRDGTYEKEYF	11	Unmodified	_SRDGTYEKEYF_					0	0	0			REV__ENSG00000167210|ENST00000642948|LOXHD1	REV__ENSG00000167210|ENST00000642948|LOXHD1	MULTI-MSMS	A375_MHC_IP_R1	1	698.2155151367188	2	697.814781	1393.61501	-0.53475	-0.00037316	0.51478	0.00035922	-0.019971	-1.3936E-05	697.8151247432086	68.78	0.81194	68.78	68.514	69.326	0					31	15	3	0	0	0	0.72494	1	24925	24925		13.615	2.7909	1	4614200	+		50924	20742	37045	37345	49726	49726					-0.06605334749610847
SRDLLKEL	8	Unmodified	_SRDLLKEL_					0	0	0			REV__SLC29A3|p.P39S|1|0.25|ENSG00000198246|chr10:71322869-71322869|C/T|missense_variant	REV__SLC29A3|p.P39S|1|0.25|ENSG00000198246|chr10:71322869-71322869|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	487.35888671875	2	487.287474	972.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.9	1	141.93	141.43	142.43	0.030731								0	0	0	0.16876	1	55486	55486		7.9102	0	1		+		50925	27986	37046	37346	49727	49727					0.0730174296027144
SREAILRFG	9	Unmodified	_SREAILRFG_					0	0	0		ENSG00000184144|ENST00000331830|CNTN2	ENSG00000184144|ENST00000331830|CNTN2	ENSG00000184144|ENST00000331830|CNTN2	MULTI-MSMS	A375_MHC_IP_R1	1	1050.6036376953125	1	1048.5898	1047.58253	0.42077	0.00044121	1.6009	0.0016787	2.0217	0.0021199	1048.5922724419797	116.8	0.66069	116.8	116.5	117.16	0					28	12	3	0	0	0	0.51106	1	42799	42799		19.257	3.1079	1	25992000			50926	8553	37047	37347	49728	49728					0.06063967428713113
SREKNKPQRS	10	Unmodified	_SREKNKPQRS_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;ENSG00000165671|ENST00000439151|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MSMS	A375_MHC_IP_R1	1	615.7383422851562	2	615.339092	1228.66363	-0.5547	-0.00034133	-1.2815	-0.00078854	-1.8362	-0.0011299	615.3382064392695	130.13	0.40639	130.13	129.85	130.26	0					12	7	2	0	0	0	0.70925	1	50037	50037		8.1555	1.0538	1	4452700			50927	6978	37048	37348	49729	49729					0.058446234007988096
SREKNKPQRS	10	Unmodified	_SREKNKPQRS_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;ENSG00000165671|ENST00000439151|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MATCH	A375_MHC_IP_R2	2		2	615.339092	1228.66363	-0.63698	-0.00039196	-0.8669	-0.00053344	-1.5039	-0.00092539	615.338526061482	129.99	0.70811	130.21	129.79	130.5	0.21419	0.039205	0.00022847	NaN	8.1555	19	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3449500			50928	6978	37048	37348							0.058446234007988096
SREKPEPEQG	10	Unmodified	_SREKPEPEQG_					0	0	0		ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	MULTI-MSMS	A375_MHC_IP_R2	2	578.681396484375	2	578.783284	1155.55202	-0.61903	-0.00035828	-1.9817	-0.001147	-2.6007	-0.0015052	579.2830470890572	59.708	0.80713	60.455	59.996	60.804	0.74714					41	15	4	0	0	0	0.71047	1	22628	22628		7.609	0	1	4452600			50929	1112	37049	37349	49730	49730					-0.019538557470013984
SREKQWCDL	9	Unmodified	_SREKQWCDL_					0	0	0			REV__nc|ENSG00000116106|P54764-2|EPHA4	REV__nc|ENSG00000116106|P54764-2|EPHA4	MULTI-SECPEP	A375_MHC_IP_R2	2	388.6219482421875	3	388.853724	1163.53934	-0.52516	-0.00020421	0.14616	5.6834E-05	-0.379	-0.00014738	388.85379951426927	26.577	0.25405	27.237	27.109	27.363	0.65992					6	4	2	0	0	0	0.79429	1	8981	8981		0.77653	0	1	2092600	+		50930	17936	37050	37350	49731	49731					-0.03588590410868164
SREPQMRPRRW	11	Unmodified	_SREPQMRPRRW_					0	0	0		ENST00000577698.1_1_17:66243842-66243974:-|nuORF	ENST00000577698.1_1_17:66243842-66243974:-|nuORF	ENST00000577698.1_1_17:66243842-66243974:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	500.2086486816406	3	500.265121	1497.77353	-0.41612	-0.00020817	-0.43703	-0.00021863	-0.85316	-0.00042681	500.265304391065	39.474	0.30381	39.474	39.289	39.592	0					9	5	2	0	0	0	0.99778	1	13427	13427		3.8459	1.2147	1	1448700			50931	13648	37051	37351	49732	49732					0.0445572546832409
SREWSWLWMRK	11	Unmodified	_SREWSWLWMRK_					0	0	0			REV__ENST00000607221.1_1_6:76000883-76000985:+|nuORF	REV__ENST00000607221.1_1_6:76000883-76000985:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	392.6287536621094	4	391.951498	1563.77689	-0.44869	-0.00017587	0.75009	0.000294	0.30139	0.00011813	392.2024197753888	18.855	0.16035	19.458	19.423	19.583	0.60308					6	4	2	0	0	0	1.0007	1	5650	5650		2.2527	1.8445	1	18255000	+		50932	26547	37052	37352	49733	49733					0.01754975522294444
SRFAKVHIL	9	Unmodified	_SRFAKVHIL_					0	0	0		ENST00000471049.5_1_10:99197505-99205308:-|nuORF;ENST00000476234.5_1_10:99200926-99205742:-|nuORF;ENST00000472345.5_1_10:99197505-99205641:-|nuORF;ENSG00000171311|ENST00000370902|EXOSC1	ENST00000471049.5_1_10:99197505-99205308:-|nuORF	ENST00000471049.5_1_10:99197505-99205308:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	357.9537658691406	3	357.553826	1069.63965	0.048066	1.7186E-05	-0.10429	-3.729E-05	-0.056226	-2.0104E-05	357.5537055011811	39.375	0.65797	39.375	39.136	39.794	0					22	12	3	0	0	0	0.37385	1	13457	13457		25.997	8.8845	1	6892900			50933	7596	37053	37353	49734	49734					0.10761434705091233
SRFAKVHIL	9	Unmodified	_SRFAKVHIL_					0	0	0		ENST00000471049.5_1_10:99197505-99205308:-|nuORF;ENST00000476234.5_1_10:99200926-99205742:-|nuORF;ENST00000472345.5_1_10:99197505-99205641:-|nuORF;ENSG00000171311|ENST00000370902|EXOSC1	ENST00000471049.5_1_10:99197505-99205308:-|nuORF	ENST00000471049.5_1_10:99197505-99205308:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	357.9535827636719	3	357.553826	1069.63965	-0.52877	-0.00018907	-0.12044	-4.3064E-05	-0.64921	-0.00023213	357.5537960856907	38.202	0.45909	38.976	38.791	39.25	0.77451					18	8	3	0	0	0	0.37385	2	14047	14047;14085		25.997	9.8483	1	5279800			50934	7596	37053	37353	49735;49736	49735					0.10761434705091233
SRFALHQTL	9	Unmodified	_SRFALHQTL_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	A375_MHC_IP_R2	2	357.9293212890625	3	358.201452	1071.58253	-0.13759	-4.9284E-05	-0.097843	-3.5048E-05	-0.23543	-8.4332E-05	358.20133761143035	42.674	0.65934	43.446	43.116	43.775	0.7724					19	12	2	0	0	0	0.47674	1	15901	15901		17.863	4.3445	1	9858800	+		50935	22046	37054	37354	49737	49737					0.04959967428703749
SRFALHQTL	9	Unmodified	_SRFALHQTL_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	358.201452	1071.58253	0.12962	4.6432E-05	-0.3201	-0.00011466	-0.19048	-6.8229E-05	358.2012889321179	43.575	0.50744	43.575	43.3	43.808	0	0.064489	-0.00014399	NaN	17.863	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7037100	+		50936	22046	37054	37354							0.04959967428703749
SRFARLQKL	9	Unmodified	_SRFARLQKL_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	A375_MHC_IP_R1	1	373.9647216796875	3	373.564614	1117.67201	0.37625	0.00014055	-0.01069	-3.9933E-06	0.36556	0.00013656	373.5644634064379	28.671	0.91128	28.671	28.238	29.149	0					58	17	5	0	0	0	0.10518	2	8854	8819;8854		49.742	16.297	1	116680000			50937	3128	37055	37355	49738;49739	49739					0.11788222108066293
SRFGKFIQV	9	Unmodified	_SRFGKFIQV_					0	0	0		nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;ENST00000563542.5_1_15:72185266-72338904:-|nuORF;nc|ENSG00000066933|B2RTY4-3|MYO9A;MYO9A|p.N791Kfs*4|1|0.35|ENSG00000066933|chr15:71938857-71938858|-/T|frameshift_variant;ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B	nc|ENSG00000066933|B2RTY4-5|MYO9A;ENSG00000099331|ENST00000682292|MYO9B	nc|ENSG00000066933|B2RTY4-5|MYO9A	MULTI-MSMS	A375_MHC_IP_R1	1	361.6101379394531	3	361.209948	1080.60801	0.22956	8.2919E-05	-0.13336	-4.8171E-05	0.0962	3.4748E-05	361.2098340003325	56.88	0.56069	56.88	56.548	57.109	0					24	10	3	0	0	0	0.69464	1	20376	20376		7.4771	1.2713	1	7660800			50938	1423;2072	37056	37356	49740	49740					0.07093441951110435
SRFGKFIRI	9	Unmodified	_SRFGKFIRI_					0	0	0		ENSG00000197616|ENST00000405093|MYH6;ENST00000557461.1_1_14:23869380-23876432:-|nuORF;ENSG00000092054|ENST00000355349|MYH7;MYH4|p.S244F|1|0.1|ENSG00000264424|chr17:10463561-10463561|G/A|missense_variant;MYH3|p.H252Y|1|0.41|ENSG00000109063|chr17:10647408-10647408|G/A|missense_variant;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;ENSG00000006788|ENST00000252172|MYH13;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;nc|ENSG00000078814|A7E2Y1|MYH7B;ENSG00000078814|ENST00000262873|MYH7B;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;ENSG00000109063|ENST00000583535|MYH3;ENSG00000125414|ENST00000245503|MYH2;nc|ENSG00000125414|Q9UKX2-2|MYH2;MYH2|p.A358Gfs*11|1|0.44|ENSG00000125414|chr17:10540002-10540003|-/C|frameshift_variant;ENSG00000133020|ENST00000403437|MYH8;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;ENSG00000264424|ENST00000255381|MYH4;ENSG00000109061|ENST00000226207|MYH1	ENSG00000197616|ENST00000405093|MYH6;nc|ENSG00000105357|Q7Z406-4|MYH14;ENSG00000006788|ENST00000252172|MYH13;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000078814|A7E2Y1|MYH7B;ENSG00000100345|ENST00000216181|MYH9;ENSG00000109063|ENST00000583535|MYH3;ENSG00000125414|ENST00000245503|MYH2;ENSG00000133020|ENST00000403437|MYH8;nc|ENSG00000133392|P35749-4|MYH11;ENSG00000264424|ENST00000255381|MYH4	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	A375_MHC_IP_R1	1	375.6295166015625	3	375.229342	1122.6662	0.36186	0.00013578	0.81025	0.00030403	1.1721	0.00043981	375.5638301823369	50.859	0.50602	50.859	50.613	51.119	0					26	9	4	0	0	0	0.20295	1	18026	18026		37.771	22.033	1	2530300			50939	2162;2592;4474;9180;3959;4507;9953;932;4473;1684;2851	37057	37357	49741	49741					0.10977123596398997
SRFGKFIRI	9	Unmodified	_SRFGKFIRI_					0	0	0		ENSG00000197616|ENST00000405093|MYH6;ENST00000557461.1_1_14:23869380-23876432:-|nuORF;ENSG00000092054|ENST00000355349|MYH7;MYH4|p.S244F|1|0.1|ENSG00000264424|chr17:10463561-10463561|G/A|missense_variant;MYH3|p.H252Y|1|0.41|ENSG00000109063|chr17:10647408-10647408|G/A|missense_variant;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;ENSG00000006788|ENST00000252172|MYH13;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;nc|ENSG00000078814|A7E2Y1|MYH7B;ENSG00000078814|ENST00000262873|MYH7B;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;ENSG00000109063|ENST00000583535|MYH3;ENSG00000125414|ENST00000245503|MYH2;nc|ENSG00000125414|Q9UKX2-2|MYH2;MYH2|p.A358Gfs*11|1|0.44|ENSG00000125414|chr17:10540002-10540003|-/C|frameshift_variant;ENSG00000133020|ENST00000403437|MYH8;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;ENSG00000264424|ENST00000255381|MYH4;ENSG00000109061|ENST00000226207|MYH1	ENSG00000197616|ENST00000405093|MYH6;nc|ENSG00000105357|Q7Z406-4|MYH14;ENSG00000006788|ENST00000252172|MYH13;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000078814|A7E2Y1|MYH7B;ENSG00000100345|ENST00000216181|MYH9;ENSG00000109063|ENST00000583535|MYH3;ENSG00000125414|ENST00000245503|MYH2;ENSG00000133020|ENST00000403437|MYH8;nc|ENSG00000133392|P35749-4|MYH11;ENSG00000264424|ENST00000255381|MYH4	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	A375_MHC_IP_R2	2	375.62939453125	3	375.229342	1122.6662	0.02637	9.8949E-06	0.17607	6.6068E-05	0.20244	7.5963E-05	375.2293490773583	49.738	0.40664	50.492	50.244	50.65	0.75406					15	7	3	0	0	0	0.18338	1	18709	18709		39.213	22.647	1	3555000			50940	2162;2592;4474;9180;3959;4507;9953;932;4473;1684;2851	37057	37357	49742	49742					0.10977123596398997
SRFGLEEL	8	Unmodified	_SRFGLEEL_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	A375_MHC_IP_R2	2	476.1500549316406	2	475.750724	949.486896	-0.52081	-0.00024778	-0.15047	-7.1589E-05	-0.67129	-0.00031936	475.750630088603	78.005	0.56328	78.748	78.468	79.031	0.74294					27	10	3	0	0	0	0.4193	1	29611	29611		58.679	14.272	1	6065800	+		50941	16747	37058	37358	49743	49743					0.010131945178045498
SRFHEQFI	8	Unmodified	_SRFHEQFI_					0	0	0		nc|ENSG00000102081|Q06787-11|FMR1;nc|ENSG00000102081|Q06787-10|FMR1;nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-6|FMR1;nc|ENSG00000102081|Q06787-2|FMR1;nc|ENSG00000102081|Q06787-4|FMR1;nc|ENSG00000102081|Q06787-5|FMR1;nc|ENSG00000102081|Q06787-9|FMR1;nc|ENSG00000102081|Q06787-7|FMR1;nc|ENSG00000102081|Q06787-3|FMR1;ENSG00000102081|ENST00000370475|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	MULTI-MSMS	A375_MHC_IP_R1	1	532.6690673828125	2	532.269616	1062.52468	-0.75181	-0.00040016	1.1102	0.00059091	0.35837	0.00019075	532.2700217522292	41.854	0.41006	41.854	41.622	42.032	0					10	7	2	0	0	0	0.76184	1	14502	14502		17.113	2.2746	1	2418800			50942	2356	37059	37359	49744	49744					-0.004082944967194635
SRFHEQFI	8	Unmodified	_SRFHEQFI_					0	0	0		nc|ENSG00000102081|Q06787-11|FMR1;nc|ENSG00000102081|Q06787-10|FMR1;nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-6|FMR1;nc|ENSG00000102081|Q06787-2|FMR1;nc|ENSG00000102081|Q06787-4|FMR1;nc|ENSG00000102081|Q06787-5|FMR1;nc|ENSG00000102081|Q06787-9|FMR1;nc|ENSG00000102081|Q06787-7|FMR1;nc|ENSG00000102081|Q06787-3|FMR1;ENSG00000102081|ENST00000370475|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	MULTI-MATCH	A375_MHC_IP_R2	2		2	532.269616	1062.52468	-0.92117	-0.00049031	0.11139	5.9291E-05	-0.80977	-0.00043102	532.2701881407299	40.916	0.40555	41.69	41.489	41.895	0.77451	-0.08205	-0.00086101	NaN	17.113	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2161900			50943	2356	37059	37359							-0.004082944967194635
SRFHGEQCQ	9	Unmodified	_SRFHGEQCQ_					0	0	0			REV__ENSG00000250374|ENST00000503032|TRIM75	REV__ENSG00000250374|ENST00000503032|TRIM75	MULTI-SECPEP	A375_MHC_IP_R2	2	363.9596252441406	3	364.494419	1090.46143	-0.34852	-0.00012704	-0.26811	-9.7723E-05	-0.61663	-0.00022476	364.4941685031642	60.061	0.40477	60.808	60.603	61.008	0.74714					13	7	2	0	0	0	0.80718	1	22761	22761		0.15932	0	1	1471400	+		50944	22842	37060	37360	49745	49745					-0.08018603276264002
SRFPEALRL	9	Unmodified	_SRFPEALRL_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-SECPEP	A375_MHC_IP_R1	1	363.9450378417969	3	363.545219	1087.61383	0.16156	5.8734E-05	-0.5583	-0.00020297	-0.39674	-0.00014423	363.54498014458403	61.38	0.76397	61.38	60.922	61.686	0					25	14	2	0	0	0	0.78351	1	22107	22107		3.3196	0	1	2676800			50945	7937	37061	37361	49746	49746					0.07352540462784418
SRFPEALRL	9	Unmodified	_SRFPEALRL_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-SECPEP	A375_MHC_IP_R2	2	363.94476318359375	3	363.545219	1087.61383	-0.37511	-0.00013637	-0.26703	-9.7078E-05	-0.64214	-0.00023345	363.5451011586507	60.441	0.86498	61.186	60.701	61.566	0.74503					27	16	2	0	0	0	0.69381	1	22858	22858		19.626	7.4512	1	3935200			50946	7937	37061	37361	49747	49747					0.07352540462784418
SRFQGTLYLS	10	Unmodified	_SRFQGTLYLS_					0	0	0		ENST00000485557.5_1_6:31938644-31939452:-|nuORF;ENST00000491327.5_1_6:31938351-31939452:-|nuORF;ENSG00000204348|ENST00000337523|DXO;ENST00000478221.5_1_6:31938491-31939710:-|nuORF;ENST00000477826.5_1_6:31938644-31938935:-|nuORF;ENST00000474587.1_1_6:31938491-31939807:-|nuORF	ENST00000485557.5_1_6:31938644-31939452:-|nuORF	ENST00000485557.5_1_6:31938644-31939452:-|nuORF	MSMS	A375_MHC_IP_R1	1	391.2015075683594	3	391.208384	1170.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.62	1	134.62	134.12	135.12	0								0	0	0	0.15541	1	51912	51912		1.5923	0	1				50947	9432	37062	37362	49748	49748					0.024845130177027386
SRFSRVVLV	9	Unmodified	_SRFSRVVLV_					0	0	0		ENST00000465745.6_1_9:35094156-35095562:-|nuORF;ENST00000474436.1_1_9:35093318-35095562:-|nuORF;nc|ENSG00000165282|Q8TEQ8-2|PIGO;ENSG00000165282|ENST00000378617|PIGO	ENST00000465745.6_1_9:35094156-35095562:-|nuORF	ENST00000465745.6_1_9:35094156-35095562:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	355.2852783203125	3	354.885464	1061.63456	-0.0094577	-3.3564E-06	-0.0017519	-6.2174E-07	-0.01121	-3.9781E-06	354.88544059346606	50.773	0.86264	50.773	50.459	51.322	0					43	16	4	0	0	0	0.39657	2	17968	17963;17968		24.882	8.7325	1	32355000			50948	6935	37063	37363	49749;49750	49750					0.10621130842469029
SRFSRVVLV	9	Unmodified	_SRFSRVVLV_					0	0	0		ENST00000465745.6_1_9:35094156-35095562:-|nuORF;ENST00000474436.1_1_9:35093318-35095562:-|nuORF;nc|ENSG00000165282|Q8TEQ8-2|PIGO;ENSG00000165282|ENST00000378617|PIGO	ENST00000465745.6_1_9:35094156-35095562:-|nuORF	ENST00000465745.6_1_9:35094156-35095562:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	355.2852783203125	3	354.885464	1061.63456	-0.49536	-0.0001758	0.23484	8.3342E-05	-0.26052	-9.2456E-05	354.8855068801226	49.716	1.0165	50.47	50.142	51.159	0.75406					47	19	4	0	0	0	0.25114	4	18647	18614;18647;18691;18773		34.222	19.461	1	38009000			50949	6935	37063	37363	49751;49752;49753;49754	49752					0.10621130842469029
SRFSRVVLV	9	Unmodified	_SRFSRVVLV_					0	0	0		ENST00000465745.6_1_9:35094156-35095562:-|nuORF;ENST00000474436.1_1_9:35093318-35095562:-|nuORF;nc|ENSG00000165282|Q8TEQ8-2|PIGO;ENSG00000165282|ENST00000378617|PIGO	ENST00000465745.6_1_9:35094156-35095562:-|nuORF	ENST00000465745.6_1_9:35094156-35095562:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	532.22412109375	2	531.824558	1061.63456	-0.95395	-0.00050734	0.15446	8.2146E-05	-0.79949	-0.00042519	531.8245956737862	49.716	0.5608	50.47	50.193	50.753	0.75406					32	10	4	0	0	0	0.23894	1	18649	18649		40.239	23.297	1	17978000			50950	6935	37063	37363	49755	49755					0.10621130842469029
SRFVEFSL	8	Unmodified	_SRFVEFSL_					0	0	0			REV__nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	REV__nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	MULTI-SECPEP	A375_MHC_IP_R2	2	492.4776306152344	2	492.761092	983.507631	-0.44562	-0.00021959	1.3601	0.0006702	0.91447	0.00045061	492.76173273021675	46.045	0.3546	46.811	46.654	47.008	0.76519					12	6	2	0	0	0	0.97144	1	17306	17306		2.3027	2.3027	1	1182800	+		50951	22097	37064	37364	49756	49756					0.015217848974884873
SRGGCFAP	8	Unmodified	_SRGGCFAP_					0	0	0			REV__ENST00000345117.2_1_8:42693107-42698298:-|nuORF	REV__ENST00000345117.2_1_8:42693107-42698298:-|nuORF	MSMS	A375_MHC_IP_R1	1	397.6260681152344	2	397.68433	793.354108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.939	1	22.939	22.439	23.439	0								0	0	0	0.16876	1	6214	6214		5.2307	0	1		+		50952	23767	37065	37365	49757	49757					-0.050835284198456065
SRGKKKKKK	9	Unmodified	_SRGKKKKKK_					0	0	0		ENSG00000139767|ENST00000267260|SRRM4;SRRM4|p.P104L|1|0.27|ENSG00000139767|chr12:119114310-119114310|C/T|missense_variant	ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	MSMS	A375_MHC_IP_R1	1	363.6528015136719	3	363.252258	1086.73495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.656	1	17.656	17.156	18.156	0								0	0	0	0.15486	1	4153	4153		0	0	1				50953	5110	37066	37366	49758	49758					0.19504787896130438
SRGKKKKKK	9	Unmodified	_SRGKKKKKK_					0	0	0		ENSG00000139767|ENST00000267260|SRRM4;SRRM4|p.P104L|1|0.27|ENSG00000139767|chr12:119114310-119114310|C/T|missense_variant	ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	MSMS	A375_MHC_IP_R1	1	363.2971496582031	3	363.252258	1086.73495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.834	1	18.834	18.334	19.334	0								0	0	0	0.15486	1	4517	4517		0	0	1				50954	5110	37066	37366	49759	49759					0.19504787896130438
SRGKKKKKK	9	Unmodified	_SRGKKKKKK_					0	0	0		ENSG00000139767|ENST00000267260|SRRM4;SRRM4|p.P104L|1|0.27|ENSG00000139767|chr12:119114310-119114310|C/T|missense_variant	ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	MSMS	A375_MHC_IP_R1	1	363.2922668457031	3	363.252258	1086.73495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.399	1	33.399	32.899	33.899	0								0	0	0	0.15486	1	10899	10899		0	0	1				50955	5110	37066	37366	49760	49760					0.19504787896130438
SRGKKKKKK	9	Unmodified	_SRGKKKKKK_					0	0	0		ENSG00000139767|ENST00000267260|SRRM4;SRRM4|p.P104L|1|0.27|ENSG00000139767|chr12:119114310-119114310|C/T|missense_variant	ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	MSMS	A375_MHC_IP_R1	1	363.2502746582031	3	363.252258	1086.73495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.498	1	36.498	35.998	36.998	0								0	0	0	0.15486	1	12221	12221		0	0	1				50956	5110	37066	37366	49761	49761					0.19504787896130438
SRGKKKKKK	9	Unmodified	_SRGKKKKKK_					0	0	0		ENSG00000139767|ENST00000267260|SRRM4;SRRM4|p.P104L|1|0.27|ENSG00000139767|chr12:119114310-119114310|C/T|missense_variant	ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	MSMS	A375_MHC_IP_R1	1	363.2935485839844	3	363.252258	1086.73495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.963	1	40.963	40.463	41.463	0								0	0	0	0.15486	1	14115	14115		0	0	1				50957	5110	37066	37366	49762	49762					0.19504787896130438
SRGKKKKKK	9	Unmodified	_SRGKKKKKK_					0	0	0		ENSG00000139767|ENST00000267260|SRRM4;SRRM4|p.P104L|1|0.27|ENSG00000139767|chr12:119114310-119114310|C/T|missense_variant	ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	MSMS	A375_MHC_IP_R1	1	363.2828063964844	3	363.252258	1086.73495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.434	1	52.434	51.934	52.934	0								0	0	0	0.15486	1	18647	18647		0	0	1				50958	5110	37066	37366	49763	49763					0.19504787896130438
SRGKKKKKK	9	Unmodified	_SRGKKKKKK_					0	0	0		ENSG00000139767|ENST00000267260|SRRM4;SRRM4|p.P104L|1|0.27|ENSG00000139767|chr12:119114310-119114310|C/T|missense_variant	ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	MSMS	A375_MHC_IP_R1	1	363.54193115234375	3	363.252258	1086.73495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.71	1	136.71	136.21	137.21	0								0	0	0	0.15486	1	52648	52648		0	0	1				50959	5110	37066	37366	49764	49764					0.19504787896130438
SRGKKKKKK	9	Unmodified	_SRGKKKKKK_					0	0	0		ENSG00000139767|ENST00000267260|SRRM4;SRRM4|p.P104L|1|0.27|ENSG00000139767|chr12:119114310-119114310|C/T|missense_variant	ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	MSMS	A375_MHC_IP_R2	2	363.65277099609375	3	363.252258	1086.73495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.432	1	17.02	16.52	17.52	0.58774								0	0	0	0.15486	1	4866	4866		0	0	1				50960	5110	37066	37366	49765	49765					0.19504787896130438
SRGKKKKKK	9	Unmodified	_SRGKKKKKK_					0	0	0		ENSG00000139767|ENST00000267260|SRRM4;SRRM4|p.P104L|1|0.27|ENSG00000139767|chr12:119114310-119114310|C/T|missense_variant	ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	MSMS	A375_MHC_IP_R2	2	363.2611999511719	3	363.252258	1086.73495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.903	1	18.499	17.999	18.999	0.59616								0	0	0	0.15486	1	5293	5293		0	0	1				50961	5110	37066	37366	49766	49766					0.19504787896130438
SRGKKKKKK	9	Unmodified	_SRGKKKKKK_					0	0	0		ENSG00000139767|ENST00000267260|SRRM4;SRRM4|p.P104L|1|0.27|ENSG00000139767|chr12:119114310-119114310|C/T|missense_variant	ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	MSMS	A375_MHC_IP_R2	2	363.2826232910156	3	363.252258	1086.73495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.461	1	52.213	51.713	52.713	0.75225								0	0	0	0.15486	1	19365	19365		0	0	1				50962	5110	37066	37366	49767	49767					0.19504787896130438
SRGKKKKKK	9	Unmodified	_SRGKKKKKK_					0	0	0		ENSG00000139767|ENST00000267260|SRRM4;SRRM4|p.P104L|1|0.27|ENSG00000139767|chr12:119114310-119114310|C/T|missense_variant	ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	MSMS	A375_MHC_IP_R2	2	363.2970275878906	3	363.252258	1086.73495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.547	1	67.283	66.783	67.783	0.73631								0	0	0	0.15486	1	25212	25212		1.9064	0.83491	1				50963	5110	37066	37366	49768	49768					0.19504787896130438
SRGKKKKKK	9	Unmodified	_SRGKKKKKK_					0	0	0		ENSG00000139767|ENST00000267260|SRRM4;SRRM4|p.P104L|1|0.27|ENSG00000139767|chr12:119114310-119114310|C/T|missense_variant	ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	MSMS	A375_MHC_IP_R2	2	363.6034851074219	3	363.252258	1086.73495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.867	1	80.612	80.112	81.112	0.74474								0	0	0	0.15486	1	30317	30317		0	0	1				50964	5110	37066	37366	49769	49769					0.19504787896130438
SRHVRKSKLDW	11	Unmodified	_SRHVRKSKLDW_					0	0	0			REV__nc|ENSG00000139350|Q8NHV4-2|NEDD1	REV__nc|ENSG00000139350|Q8NHV4-2|NEDD1	MULTI-SECPEP	A375_MHC_IP_R1	1	471.1107482910156	3	471.268748	1410.78442	-0.4084	-0.00019246	0.19717	9.292E-05	-0.21123	-9.9544E-05	471.60329687086124	24.956	0.30243	24.956	24.852	25.154	0					6	5	2	0	0	0	0.99424	1	7216	7216		1.0136	0	1	4739400	+		50965	19151	37067	37367	49770	49770					0.09545451114286152
SRHYPGREAQ	10	Unmodified	_SRHYPGREAQ_					0	0	0		ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	MULTI-MSMS	A375_MHC_IP_R1	1	601.1963500976562	2	600.79706	1199.57957	-0.18207	-0.00010938	-0.42005	-0.00025237	-0.60212	-0.00036175	600.7967894127066	43.23	0.45913	43.23	42.891	43.351	0					14	8	2	0	0	0	0.21482	1	15064	15064		47.732	1.7097	1	1593000			50966	4145	37068	37368	49771	49771					-0.012239076960895545
SRHYPGREAQ	10	Unmodified	_SRHYPGREAQ_					0	0	0		ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	600.79706	1199.57957	-0.18207	-0.00010938	-0.42005	-0.00025237	-0.60212	-0.00036175	600.7967894127066	43.23	0.45913	43.23	42.891	43.351	0	-0.041837	0.00035244	NaN	47.732	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1593000			50967	4145	37068	37368							-0.012239076960895545
SRIEKEYEN	9	Unmodified	_SRIEKEYEN_					0	0	0		tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	MSMS	A375_MHC_IP_R1	1	389.8660888671875	3	389.859532	1166.55677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.559	1	46.559	46.059	47.059	0								0	0	0	0.15486	1	16343	16343		9.7643	1.3199	1				50968	30058	37069	37369	49772	49772					-0.019849716042244836
SRIHNTAKKKK	11	Unmodified	_SRIHNTAKKKK_					0	0	0			REV__ENST00000322357.8_1_19:4046537-4046594:-|nuORF	REV__ENST00000322357.8_1_19:4046537-4046594:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	656.3037719726562	2	655.904402	1309.79425	-0.8029	-0.00052663	0.37143	0.00024362	-0.43147	-0.000283	655.9043880125663	149.26	2.2828	149.26	147.72	150	0					243	79	5	0	0	0	0.73902	1	57213	57213		0.30703	0.30703	1	2016400	+		50969	23581	37070	37370	49773	49773					0.15174639119618405
SRIHNTAKKKK	11	Unmodified	_SRIHNTAKKKK_					0	0	0			REV__ENST00000322357.8_1_19:4046537-4046594:-|nuORF	REV__ENST00000322357.8_1_19:4046537-4046594:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	656.3042602539062	2	655.904402	1309.79425	-0.6838	-0.00044851	0.27463	0.00018013	-0.40917	-0.00026837	655.9043966971425	149.31	2.2454	149.33	147.77	150.01	0.018265					270	86	4	0	0	0	0.73902	1	58108	58108		0.30703	0.30703	1	1963400	+		50970	23581	37070	37370	49774	49774					0.15174639119618405
SRIIRELFG	9	Unmodified	_SRIIRELFG_					0	0	0			REV__nc|ENSG00000186409|Q5VVM6-2|CCDC30	REV__nc|ENSG00000186409|Q5VVM6-2|CCDC30	MULTI-MSMS	A375_MHC_IP_R1	1	364.2524719238281	3	364.217102	1089.62948	0.32836	0.00011959	-0.49653	-0.00018085	-0.16817	-6.1252E-05	364.216829443909	20.584	0.61228	20.584	20.129	20.742	0					13	8	2	0	0	0	0.73141	1	5184	5184		4.1895	0.24511	1	1871800	+		50971	21968	37071	37371	49775	49775					0.0882482697982141
SRIKEEEPI	9	Unmodified	_SRIKEEEPI_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-SECPEP	A375_MHC_IP_R2	2	368.285400390625	3	367.536389	1099.58734	0.24317	8.9374E-05	1.574	0.00057852	1.8172	0.00066789	367.5369866477619	27.471	0.25458	28.15	27.945	28.2	0.67857					6	4	2	0	0	0	0.67471	1	9402	9402		17.443	0	1	1385100	+		50972	21972	37072	37372	49776	49776					0.041528067808030755
SRILVDVP	8	Unmodified	_SRILVDVP_					0	0	0		nc|ENSG00000203995|Q6WRX3-2|ZYG11A;ENSG00000203995|ENST00000371528|ZYG11A	nc|ENSG00000203995|Q6WRX3-2|ZYG11A	nc|ENSG00000203995|Q6WRX3-2|ZYG11A	MULTI-SECPEP	A375_MHC_IP_R1	1	450.1713562011719	2	449.77146	897.528367	0.1804	8.1138E-05	-0.79644	-0.00035821	-0.61604	-0.00027708	449.7712022800901	48.248	0.6062	48.248	47.87	48.476	0					18	11	2	0	0	0	0.8957	1	17037	17037		21.747	10.106	1	3599600			50973	9404	37073	37373	49777	49777					0.07550375277139665
SRIRPPVHV	9	Unmodified	_SRIRPPVHV_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MSMS	A375_MHC_IP_R1	1	354.24383544921875	3	354.217325	1059.63015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.6	1	48.6	48.1	49.1	0								0	0	0	0.15486	1	17155	17155		4.1895	1.1943	1		+		50974	19347	37074	37374	49778	49778					0.10271666419566827
SRIRTTAYAP	10	Unmodified	_SRIRTTAYAP_					0	0	0			REV__nc|ENSG00000104381|Q8TB36-2|GDAP1	REV__nc|ENSG00000104381|Q8TB36-2|GDAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	567.7131958007812	2	568.314554	1134.61456	-0.55796	-0.0003171	-1.7699	-0.0010058	-2.3278	-0.0013229	568.3147456511314	91.037	0.60982	91.037	90.539	91.148	0					12	11	2	0	0	0	0.74754	1	33309	33309		29.082	8.628	1	1472400	+		50975	17320	37075	37375	49779	49779					0.05263335111840206
SRKDRISPY	9	Unmodified	_SRKDRISPY_					0	0	0			REV__ENSG00000106479|ENST00000223210|ZNF862	REV__ENSG00000106479|ENST00000223210|ZNF862	MSMS	A375_MHC_IP_R1	1	374.60089111328125	3	374.540245	1120.59891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.665	1	21.665	21.165	22.165	0								0	0	0	0.15486	1	5728	5728		6.1918	0.78914	1		+		50976	17452	37076	37376	49780	49780					0.043430485948192654
SRKHYGSV	8	Unmodified	_SRKHYGSV_					0	0	0		nc|ENSG00000136895|Q5VVW2-3|GARNL3;nc|ENSG00000136895|Q5VVW2-2|GARNL3;nc|ENSG00000136895|Q5VVW2-5|GARNL3;ENSG00000136895|ENST00000373387|GARNL3	nc|ENSG00000136895|Q5VVW2-3|GARNL3	nc|ENSG00000136895|Q5VVW2-3|GARNL3	MULTI-SECPEP	A375_MHC_IP_R1	1	467.1116027832031	2	467.248683	932.482814	-0.38859	-0.00018157	-3.2026	-0.0014964	-3.5912	-0.001678	467.247318897763	32.154	0.25764	32.154	32.075	32.333	0					5	4	2	0	0	0	0.90775	1	10415	10415		14.838	0	1	488020			50977	4839	37077	37377	49781	49781					0.013871498147636885
SRKKVLLKVI	10	Unmodified	_SRKKVLLKVI_					0	0	0		ENSG00000075785|ENST00000265062|RAB7A;ENST00000491681.1_1_3:128514210-128516981:+|nuORF	ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	MSMS	A375_MHC_IP_R1	1	592.411376953125	2	592.416083	1182.81761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.762	1	81.762	81.262	82.262	0								0	0	0	0.15637	1	29884	29884		0	0	1				50978	1621	37078	37378	49782	49782					0.2335168490428714
SRKLRRSRHS	10	Unmodified	_SRKLRRSRHS_					0	0	0		ENST00000520674.5_1_5:141016607-141016847:+|nuORF	ENST00000520674.5_1_5:141016607-141016847:+|nuORF	ENST00000520674.5_1_5:141016607-141016847:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	642.28125	2	641.881793	1281.74903	-0.82963	-0.00053253	1.0419	0.00066877	0.21226	0.00013624	641.8824120810401	134.26	1.217	134.26	134.12	135.34	0					32	23	2	0	0	0	0.94516	1	52060	52060		3.5965	2.1146	1	2570300			50979	12999	37079	37379	49783	49783					0.11942833377111128
SRKLVMQLP	9	Unmodified	_SRKLVMQLP_					0	0	0			REV__ENST00000432700.5_1_22:36537786-36537945:-|nuORF	REV__ENST00000432700.5_1_22:36537786-36537945:-|nuORF	MSMS	A375_MHC_IP_R2	2	357.9293212890625	3	357.882955	1070.62703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.722	1	43.495	42.995	43.995	0.7724								0	0	0	0.15486	1	15901	15901		7.609	0	1		+		50980	24719	37080	37380	49784	49784					0.09454655250533506
SRKLVPHG	8	Unmodified	_SRKLVPHG_					0	0	0			REV__ENSG00000083457|ENST00000263087|ITGAE	REV__ENSG00000083457|ENST00000263087|ITGAE	MULTI-MSMS	A375_MHC_IP_R2	2	447.6693420410156	2	447.269419	892.524284	-0.15328	-6.8556E-05	0.30417	0.00013604	0.15089	6.7488E-05	447.26948207219255	142.78	0.15164	142.81	142.69	142.84	0.030731					4	2	2	0	0	0	0.77839	1	55821	55821		0.79363	0	1	2500400	+		50981	16805	37081	37381	49785	49785					0.07372330574082753
SRKMTNFIM	9	Unmodified	_SRKMTNFIM_					0	0	0		nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4	nc|ENSG00000083223|Q5VYS8-4|TUT7;ENSG00000134744|ENST00000257177|TUT4	ENSG00000134744|ENST00000257177|TUT4	MULTI-SECPEP	A375_MHC_IP_R1	1	564.1370239257812	2	564.288637	1126.56272	-0.35431	-0.00019993	2.885	0.001628	2.5307	0.001428	564.2904169389011	81.775	0.50626	81.775	81.455	81.961	0					14	9	2	0	0	0	0.20645	1	29925	29925		39.95	11.463	1	1249000			50982	4601;1773	37082	37382	49786	49786					0.004501321020825344
SRKMTNFIM	9	Unmodified	_SRKMTNFIM_					0	0	0		nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4	nc|ENSG00000083223|Q5VYS8-4|TUT7;ENSG00000134744|ENST00000257177|TUT4	ENSG00000134744|ENST00000257177|TUT4	MULTI-SECPEP	A375_MHC_IP_R2	2	563.7002563476562	2	564.288637	1126.56272	-0.57284	-0.00032325	2.5699	0.0014502	1.9971	0.0011269	564.2898870492579	80.901	0.46224	81.646	81.365	81.828	0.74474					11	8	2	0	0	0	0.20645	1	30701	30701		47.749	23.728	1	1279600			50983	4601;1773	37082	37382	49787	49787					0.004501321020825344
SRKPSPMFY	9	Unmodified	_SRKPSPMFY_					0	0	0			REV__NEURL4|p.P1360S|1|0.39|ENSG00000215041|chr17:7317915-7317915|G/A|missense_variant	REV__NEURL4|p.P1360S|1|0.39|ENSG00000215041|chr17:7317915-7317915|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	556.8089599609375	2	556.781502	1111.54845	-0.34809	-0.00019381	1.9792	0.001102	1.6311	0.00090815	556.7823601166104	53.902	0.50634	53.902	53.707	54.213	0					12	9	2	0	0	0	0.69674	1	19200	19200		7.2892	0.56607	1	1090000	+		50984	27595	37083	37383	49788	49788					-0.002861970545609438
SRKPSPMFY	9	Unmodified	_SRKPSPMFY_					0	0	0			REV__NEURL4|p.P1360S|1|0.39|ENSG00000215041|chr17:7317915-7317915|G/A|missense_variant	REV__NEURL4|p.P1360S|1|0.39|ENSG00000215041|chr17:7317915-7317915|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	556.781502	1111.54845	-1.3535	-0.0007536	2.8328	0.0015773	1.4793	0.00082367	556.7829816754443	53.09	0.30688	53.841	53.739	54.046	0.75105	-0.030511	0.00020765	NaN	7.2892	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1127600	+		50985	27595	37083	37383							-0.002861970545609438
SRKRRYVRRKQ	11	Unmodified	_SRKRRYVRRKQ_					0	0	0			REV__ENSG00000119403|ENST00000373896|PHF19	REV__ENSG00000119403|ENST00000373896|PHF19	MULTI-MSMS	A375_MHC_IP_R1	1	512.0498046875	3	511.650075	1531.92839	-0.7977	-0.00040814	0.28838	0.00014755	-0.50932	-0.00026059	511.6500873295454	138.8	1.4713	138.8	138.61	140.08	0					79	28	5	0	0	0	0.73924	1	53372	53372		0.094841	0.094841	1	12393000	+		50986	18072	37084	37384	49789	49789					0.1837071766506142
SRKRRYVRRKQ	11	Unmodified	_SRKRRYVRRKQ_					0	0	0			REV__ENSG00000119403|ENST00000373896|PHF19	REV__ENSG00000119403|ENST00000373896|PHF19	MULTI-MSMS	A375_MHC_IP_R2	2	512.04931640625	3	511.650075	1531.92839	-0.56211	-0.0002876	0.19072	9.7582E-05	-0.37139	-0.00019002	511.6500539132356	138.76	1.4092	138.82	138.65	140.06	0.059906					64	27	5	0	0	0	0.73924	1	54387	54387		0.094841	0.011491	1	19352000	+		50987	18072	37084	37384	49790	49790					0.1837071766506142
SRKSSCSHKL	10	Unmodified	_SRKSSCSHKL_					0	0	0		nc|ENSG00000107147|Q5JUK3-4|KCNT1;nc|ENSG00000107147|Q5JUK3|KCNT1;ENSG00000107147|ENST00000371757|KCNT1;nc|ENSG00000107147|Q5JUK3-2|KCNT1	nc|ENSG00000107147|Q5JUK3-4|KCNT1	nc|ENSG00000107147|Q5JUK3-4|KCNT1	MULTI-SECPEP	A375_MHC_IP_R1	1	378.2768249511719	3	378.201235	1131.58188	0.34847	0.00013179	0.8656	0.00032737	1.2141	0.00045916	378.2016279878372	40.26	0.30651	40.26	40.151	40.458	0					8	5	2	0	0	0	0.87163	1	13815	13815		8.4443	2.2525	1	766300			50988	2727	37085	37385	49791	49791					0.02134804717343286
SRLLKRHRRRR	11	Unmodified	_SRLLKRHRRRR_					0	0	0		ENSG00000004975|ENST00000005340|DVL2;ENST00000572285.5_1_17:7132813-7133230:-|nuORF;ENST00000574642.5_1_17:7132550-7133686:-|nuORF	ENSG00000004975|ENST00000005340|DVL2	ENSG00000004975|ENST00000005340|DVL2	MSMS	A375_MHC_IP_R1	1	511.9884948730469	3	511.997697	1532.97126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.093	1	38.093	37.593	38.593	0								0	0	0	0.16358	1	12890	12890		0.094841	0.094841	1				50989	877	37086	37386	49792	49792					0.2260953251313822
SRLLLLLL	8	Unmodified	_SRLLLLLL_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37;REV__nc|ENSG00000283706|Q9UI38|PRSS50	ENSG00000170775|ENST00000303921|GPR37	MULTI-MSMS	A375_MHC_IP_R1	1	471.3607482910156	2	470.83132	939.648088	-0.35488	-0.00016709	0.023781	1.1197E-05	-0.3311	-0.00015589	470.83122127930375	25.28	0.30351	25.28	25.104	25.408	0					9	5	2	0	0	0	0.77797	1	7266	7266		2.3027	0	1	4992600			50990	7535;27548	37087	37387	49793	49793					0.17584988621706543
SRLMRRHKRRR	11	Unmodified	_SRLMRRHKRRR_					0	0	0		ENST00000478247.1_1_3:183882805-183888540:+|nuORF;nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3;DVL3|p.N246Tfs*37|1|0.31|ENSG00000161202|chr3:184165464-184165464|A/-|frameshift_variant	ENST00000478247.1_1_3:183882805-183888540:+|nuORF	ENST00000478247.1_1_3:183882805-183888540:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	388.39080810546875	4	388.739197	1550.92768	0.21031	8.1756E-05	0.85183	0.00033114	1.0621	0.00041289	388.9902885738617	61.786	0.51088	61.786	61.432	61.943	0					17	9	3	0	0	0	1.0015	1	22165	22165		0.08335	0.08335	1	2520400			50991	6466	37088	37388	49794	49794					0.17425599744319697
SRLQPPFSPH	10	Unmodified	_SRLQPPFSPH_					0	0	0		ENSG00000055483|ENST00000449938|USP36	ENSG00000055483|ENST00000449938|USP36	ENSG00000055483|ENST00000449938|USP36	MULTI-SECPEP	A375_MHC_IP_R2	2	388.9486389160156	3	389.208607	1164.60399	-0.2746	-0.00010688	2.3171	0.00090182	2.0425	0.00079494	389.2087939599252	50.7	0.45472	51.454	51.26	51.715	0.75406					14	8	3	0	0	0	0.89369	1	19045	19045		20.871	8.5208	1	1198400			50992	1270	37089	37389	49795	49795					0.028273524574160547
SRLRRLSAL	9	Unmodified	_SRLRRLSAL_					0	0	0		ENST00000584377.5_1_17:80211530-80212190:-|nuORF	ENST00000584377.5_1_17:80211530-80212190:-|nuORF	ENST00000584377.5_1_17:80211530-80212190:-|nuORF	MSMS	A375_MHC_IP_R1	1	357.9309997558594	3	357.896363	1070.66726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.486	1	46.486	45.986	46.986	0								0	0	0	0.15486	1	16312	16312		2.4985	0	1				50993	13703	37090	37390	49796	49796					0.13475337965292056
SRLRRLSALH	10	Unmodified	_SRLRRLSALH_					0	0	0		ENST00000584377.5_1_17:80211530-80212190:-|nuORF	ENST00000584377.5_1_17:80211530-80212190:-|nuORF	ENST00000584377.5_1_17:80211530-80212190:-|nuORF	MSMS	A375_MHC_IP_R1	1	604.726806640625	2	604.870363	1207.72617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.99	1	141.99	141.49	142.49	0								0	0	0	0.15591	1	54486	54486		1.6526	0.32309	1				50994	13703	37091	37391	49797	49797					0.13061814259640414
SRLTATSVSRV	11	Unmodified	_SRLTATSVSRV_					0	0	0		nc|ENSG00000174748|P61313-2|RPL15	nc|ENSG00000174748|P61313-2|RPL15	nc|ENSG00000174748|P61313-2|RPL15	MSMS	A375_MHC_IP_R2	2	392.6144104003906	3	392.894688	1175.66223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.539	1	59.288	58.788	59.788	0.74894								0	0	0	0.16124	1	22148	22148		12.228	1.3286	1				50995	14776	37092	37392	49798	49798					0.08142989312045756
SRLVLCVP	8	Unmodified	_SRLVLCVP_					0	0	0			REV__ENST00000547733.1_1_12:39688007-39688133:-|nuORF	REV__ENST00000547733.1_1_12:39688007-39688133:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	444.30889892578125	2	443.762581	885.510608	-0.22468	-9.9704E-05	0.99005	0.00043935	0.76537	0.00033964	443.7632157733491	19.429	0.20259	19.429	19.318	19.521	0					5	3	2	0	0	0	0.972	1	4866	4866		0.79363	0.79363	1	1158100	+		50996	26011	37093	37393	49799	49799					0.0632733675063264
SRLWRYFHMV	10	Unmodified	_SRLWRYFHMV_					0	0	0			REV__ENSG00000177084|ENST00000320574|POLE	REV__ENSG00000177084|ENST00000320574|POLE	MSMS	A375_MHC_IP_R2	2	465.6866455078125	3	465.576525	1393.70774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.745	1	75.482	74.982	75.982	0.73752								0	0	0	0.15435	1	28370	28370		3.5871	0	1		+		50997	21436	37094	37394	49800	49800					0.026639362934020028
SRMSSAPGRL	10	Unmodified	_SRMSSAPGRL_					0	0	0		tr|U7T3W8|U7T3W8_FUSNUP-typeconjugativetransferproteinTrbLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00288PE=4SV=1	tr|U7T3W8|U7T3W8_FUSNUP-typeconjugativetransferproteinTrbLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00288PE=4SV=1	tr|U7T3W8|U7T3W8_FUSNUP-typeconjugativetransferproteinTrbLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00288PE=4SV=1	MSMS	A375_MHC_IP_R2	2	354.61328125	3	354.522197	1060.54476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.516	1	38.287	37.787	38.787	0.7709								0	0	0	0.15464	1	13733	13733		5.7834	0	1				50998	29987	37095	37395	49801	49801					0.01691133171607362
SRNENLRLL	9	Unmodified	_SRNENLRLL_					0	0	0		ENSG00000046651|ENST00000340096|OFD1;ENST00000490265.5_1_X:13771424-13787224:+|nuORF;nc|ENSG00000046651|O75665-3|OFD1	ENSG00000046651|ENST00000340096|OFD1	ENSG00000046651|ENST00000340096|OFD1	MULTI-MSMS	A375_MHC_IP_R1	1	372.6158142089844	3	372.215761	1113.62546	0.52669	0.00019604	-0.020489	-7.6265E-06	0.5062	0.00018842	372.2156996205198	39.215	0.81178	39.215	38.832	39.643	0					29	15	3	0	0	0	0.056914	1	13370	13370		49.742	15.52	1	6659700			50999	1190	37096	37396	49802	49802					0.07318737486116333
SRNENLRLL	9	Unmodified	_SRNENLRLL_					0	0	0		ENSG00000046651|ENST00000340096|OFD1;ENST00000490265.5_1_X:13771424-13787224:+|nuORF;nc|ENSG00000046651|O75665-3|OFD1	ENSG00000046651|ENST00000340096|OFD1	ENSG00000046651|ENST00000340096|OFD1	MULTI-MSMS	A375_MHC_IP_R2	2	372.615478515625	3	372.215761	1113.62546	0.15877	5.9097E-05	-0.68261	-0.00025408	-0.52384	-0.00019498	372.21566053679834	38.161	0.51249	38.935	38.687	39.2	0.77451					24	9	4	0	0	0	0.04699	1	14018	14018		53.47	25.236	1	6506500			51000	1190	37096	37396	49803	49803					0.07318737486116333
SRNFELIPE	9	Unmodified	_SRNFELIPE_					0	0	0			REV__nc|ENSG00000100578|Q9BVV6-2|KIAA0586	REV__nc|ENSG00000100578|Q9BVV6-2|KIAA0586	MULTI-MSMS	A375_MHC_IP_R2	2	368.9049072265625	3	368.860984	1103.56112	-0.087851	-3.2405E-05	0.35525	0.00013104	0.2674	9.8633E-05	368.86080837355524	22.815	0.91627	23.445	23.113	24.029	0.63014					40	17	4	0	0	0	0.64971	1	7357	7357		11.495	0.59575	1	8345200	+		51001	17103	37097	37397	49804	49804					0.013485376093512969
SRNRIRFMK	9	Unmodified	_SRNRIRFMK_					0	0	0			REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	MSMS	A375_MHC_IP_R1	1	403.6327209472656	3	403.23287	1206.67678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.3673	1	5.3673	4.8673	5.8673	0								0	0	0	0.15486	1	1223	1223		0.20686	0.083992	1		+		51002	21317	37098	37398	49805	49805					0.08170782979186697
SRPASIFVEL	10	Unmodified	_SRPASIFVEL_					0	0	0			REV__nc|ENSG00000067066|P23497-7|SP100	REV__nc|ENSG00000067066|P23497-7|SP100	MSMS	A375_MHC_IP_R2	2	559.712158203125	2	559.813856	1117.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.43	1	119.97	119.47	120.47	0.5321								0	0	0	0.13403	1	45497	45497		32.786	0	1		+		51003	16528	37099	37399	49806	49806					0.05905701023084475
SRPEAVAEV	9	Unmodified	_SRPEAVAEV_					0	0	0		nc|ENSG00000155256|Q5T4F4-4|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27	nc|ENSG00000155256|Q5T4F4-4|ZFYVE27	nc|ENSG00000155256|Q5T4F4-4|ZFYVE27	MULTI-MSMS	A375_MHC_IP_R1	1	479.65338134765625	2	479.253631	956.49271	-0.39813	-0.0001908	0.15507	7.4319E-05	-0.24306	-0.00011649	479.25367801282715	28.453	0.65728	28.453	28.188	28.845	0					29	12	3	0	0	0	0.16945	1	8769	8769		40.239	12.61	1	8251700			51004	6134	37100	37400	49807	49807					0.012722930294785328
SRPEAVAEV	9	Unmodified	_SRPEAVAEV_					0	0	0		nc|ENSG00000155256|Q5T4F4-4|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27	nc|ENSG00000155256|Q5T4F4-4|ZFYVE27	nc|ENSG00000155256|Q5T4F4-4|ZFYVE27	MULTI-MSMS	A375_MHC_IP_R2	2	479.6534729003906	2	479.253631	956.49271	-0.57948	-0.00027772	-0.090029	-4.3147E-05	-0.66951	-0.00032086	479.25360700352763	27.813	0.60792	28.491	28.2	28.808	0.67857					26	11	3	0	0	0	0.084766	1	9550	9550		53.404	19.002	1	9533900			51005	6134	37100	37400	49808	49808					0.012722930294785328
SRPEGRSW	8	Unmodified	_SRPEGRSW_					0	0	0		nc|ENSG00000131435|P50479-2|PDLIM4;ENSG00000131435|ENST00000253754|PDLIM4	nc|ENSG00000131435|P50479-2|PDLIM4	nc|ENSG00000131435|P50479-2|PDLIM4	MULTI-SECPEP	A375_MHC_IP_R1	1	488.1436462402344	2	487.743765	973.472977	-0.19845	-9.6793E-05	0.1325	6.4628E-05	-0.065946	-3.2165E-05	487.7436753627785	20.292	0.35531	20.292	20.079	20.435	0					12	6	2	0	0	0	0.96184	1	5199	5199		18.146	13.817	1	1926400			51006	4328	37101	37401	49809	49809					-0.014820381906133662
SRPELIFRL	9	Unmodified	_SRPELIFRL_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-MSMS	A375_MHC_IP_R1	1	377.9608459472656	3	377.560869	1129.66078	0.50723	0.00019151	-0.14469	-5.4628E-05	0.36254	0.00013688	377.5608000894028	78.53	0.45521	78.53	78.301	78.756	0					15	8	2	0	0	0	0.21241	1	28667	28667		37.075	15.484	1	2827000			51007	1419	37102	37402	49810	49810					0.1011340001393819
SRPELIFRL	9	Unmodified	_SRPELIFRL_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-MSMS	A375_MHC_IP_R2	2	377.9607238769531	3	377.560869	1129.66078	0.16476	6.2207E-05	-0.15659	-5.9123E-05	0.0081672	3.0836E-06	377.56077448196606	77.498	0.56007	78.241	77.908	78.468	0.74293					19	10	2	0	0	0	0.21241	1	29426	29426		37.075	19.632	1	2309300			51008	1419	37102	37402	49811	49811					0.1011340001393819
SRPEQHQPV	9	Unmodified	_SRPEQHQPV_					0	0	0		ENST00000427625.1_1_10:72245529-72245760:-|nuORF	ENST00000427625.1_1_10:72245529-72245760:-|nuORF	ENST00000427625.1_1_10:72245529-72245760:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	360.2525939941406	3	359.852712	1076.53631	0.19139	6.8874E-05	-0.37105	-0.00013352	-0.17966	-6.465E-05	359.85251617572254	20.279	0.55718	20.279	20.03	20.587	0					24	10	4	0	0	0	0.72623	1	5219	5219		9.544	9.544	1	5610400			51009	11826	37103	37403	49812	49812					0.0010990252662850253
SRPGPAVPGLR	11	Unmodified	_SRPGPAVPGLR_					0	0	0		nc|ENSG00000140931|Q96MX0-2|CMTM3;ENSG00000140931|ENST00000567572|CMTM3	nc|ENSG00000140931|Q96MX0-2|CMTM3	nc|ENSG00000140931|Q96MX0-2|CMTM3	MULTI-MSMS	A375_MHC_IP_R2	2	369.60162353515625	3	369.552485	1105.63563	0.10395	3.8414E-05	-3.1296	-0.0011566	-3.0257	-0.0011181	369.55117332019927	36.344	0.15231	37.115	37.005	37.157	0.7709					4	2	2	0	0	0	0.7328	1	13252	13252		6.2344	0.042509	1	544740			51010	5193	37104	37404	49813	49813					0.08703345211347369
SRPKISGWPE	10	Unmodified	_SRPKISGWPE_					0	0	0			REV__ENST00000553607.1_1_16:30102787-30102823:-|nuORF	REV__ENST00000553607.1_1_16:30102787-30102823:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	386.6086120605469	3	386.208495	1155.60366	0.30827	0.00011906	0.63846	0.00024658	0.94673	0.00036563	386.20850231332986	31.685	0.45662	31.685	31.465	31.921	0					19	8	3	0	0	0	0.71455	1	10175	10175		5.7834	5.7834	1	6541100	+		51011	26067	37105	37405	49814	49814					0.03207932737586816
SRPLLENKL	9	Unmodified	_SRPLLENKL_					0	0	0		ENST00000461591.5_1_3:142720470-142741912:+|nuORF;nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;ENST00000470400.5_1_3:142720470-142740424:+|nuORF	ENST00000461591.5_1_3:142720470-142741912:+|nuORF	ENST00000461591.5_1_3:142720470-142741912:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	357.8594055175781	3	357.216991	1068.62914	-0.45081	-0.00016104	-0.041875	-1.4958E-05	-0.49268	-0.00017599	357.21695369368354	35.392	0.40356	36.156	35.98	36.384	0.76338					13	7	2	0	0	0	0.67539	1	12835	12835		7.9454	4.3583	1	4277200			51012	6711	37106	37406	49815	49815					0.09757407259985484
SRPLPSLTM	9	Unmodified	_SRPLPSLTM_					0	0	0		ENST00000530703.1_1_19:1041282-1041597:+|nuORF;ENST00000527496.1_1_19:1041282-1041972:+|nuORF;ENST00000526885.5_1_19:1041282-1042570:+|nuORF	ENST00000530703.1_1_19:1041282-1041597:+|nuORF	ENST00000530703.1_1_19:1041282-1041597:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.67572021484375	2	501.276052	1000.53755	-0.10264	-5.1452E-05	-1.1706	-0.00058677	-1.2732	-0.00063822	501.2755964236228	48.096	0.75811	48.096	47.567	48.325	0					28	14	3	0	0	0	0.13845	1	16929	16929		43.772	1.8168	1	14671000			51013	13089	37107	37407	49816	49816					0.03730400571168957
SRPNWAQV	8	Unmodified	_SRPNWAQV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R2	2	479.1472473144531	2	479.248683	956.482814	-0.44144	-0.00021156	0.66627	0.00031931	0.22483	0.00010775	479.249045612129	101.33	0.45911	102.09	101.7	102.16	0.76428					12	8	2	0	0	0	0.73946	1	38390	38390		23.148	0	1	1223400			51014	6151;14694	37108	37408	49817	49817					0.0028314981475432432
SRPRHVRPKRR	11	Unmodified	_SRPRHVRPKRR_					0	0	0			REV__nc|ENSG00000171634|Q12830-4|BPTF	REV__nc|ENSG00000171634|Q12830-4|BPTF	MULTI-MSMS	A375_MHC_IP_R1	1	723.3450317382812	2	722.945259	1443.87596	-0.88675	-0.00064107	0.88313	0.00063845	-0.0036158	-2.614E-06	722.9456321736594	138	0.30928	138	137.84	138.15	0					12	5	3	0	0	0	0.73924	1	53112	53112		0	0	1	1813800	+		51015	21084	37109	37409	49818	49818					0.1717817932210437
SRPRPAGA	8	Unmodified	_SRPRPAGA_					0	0	0		ENSG00000166454|ENST00000299575|ATMIN	ENSG00000166454|ENST00000299575|ATMIN	ENSG00000166454|ENST00000299575|ATMIN	MULTI-MSMS	A375_MHC_IP_R1	1	406.6304931640625	2	406.230294	810.446034	-0.27815	-0.00011299	0.44398	0.00018036	0.16584	6.7368E-05	406.2303932032573	100.88	2.2796	100.88	99.925	102.2	0					96	44	3	0	0	0	0.77839	1	37247	37247		0.79363	0	1	4818500			51016	7076	37110	37410	49819	49819					0.03322897988846307
SRPRRRLRLRR	11	Unmodified	_SRPRRRLRLRR_					0	0	0		ENST00000377707.3_1_9:38068784-38069144:-|nuORF	ENST00000377707.3_1_9:38068784-38069144:-|nuORF	ENST00000377707.3_1_9:38068784-38069144:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	381.96026611328125	4	381.250092	1520.97126	-0.30772	-0.00011732	-1.3557	-0.00051685	-1.6634	-0.00063417	381.50025226485786	19.054	0.19974	19.658	19.533	19.733	0.60308					5	3	2	0	0	0	1.0015	1	5676	5676		0.073264	0	1	2576800			51017	11301	37111	37411	49820	49820					0.23161532513131533
SRPVKLFRV	9	Unmodified	_SRPVKLFRV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	A375_MHC_IP_R1	1	368.26953125	3	367.901226	1100.68185	0.38898	0.00014311	0.061381	2.2582E-05	0.45037	0.00016569	367.9012327517769	35.241	0.76458	35.241	34.912	35.676	0					43	14	4	0	0	0	0.0844	3	11685	11643;11685;11822		53.47	28.588	1	29247000			51018	8958	37112	37412	49821;49822;49823	49822					0.1355341011346809
SRPVKLFRV	9	Unmodified	_SRPVKLFRV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	A375_MHC_IP_R2	2	368.2694091796875	3	367.901226	1100.68185	-0.23162	-8.5213E-05	-0.096207	-3.5395E-05	-0.32783	-0.00012061	367.9011791699495	34.025	0.81264	34.778	34.5	35.312	0.75225					34	15	3	0	0	0	0.71784	1	12149	12149		5.4027	0.87384	1	54158000			51019	8958	37112	37412	49824	49824					0.1355341011346809
SRQEVIRRL	9	Unmodified	_SRQEVIRRL_					0	0	0		ENSG00000165630|ENST00000378572|PRPF18	ENSG00000165630|ENST00000378572|PRPF18	ENSG00000165630|ENST00000378572|PRPF18	MULTI-MSMS	A375_MHC_IP_R1	1	386.6352233886719	3	386.235156	1155.68364	0.5219	0.00020157	-0.5377	-0.00020768	-0.015806	-6.1047E-06	386.2349320974922	21.637	0.61015	21.637	21.301	21.911	0					25	11	3	0	0	0	0.61363	2	5699	5699;5766		14.218	7.5878	1	5121900			51020	6971	37113	37413	49825;49826	49825					0.11202419131427632
SRQNWPKGE	9	Unmodified	_SRQNWPKGE_					0	0	0		ENSG00000167850|ENST00000330793|CD300C	ENSG00000167850|ENST00000330793|CD300C	ENSG00000167850|ENST00000330793|CD300C	MULTI-SECPEP	A375_MHC_IP_R2	2	367.92083740234375	3	367.852712	1100.53631	-0.1332	-4.8997E-05	1.1142	0.00040985	0.98098	0.00036086	368.18719729817326	20.148	0.30623	20.758	20.6	20.907	0.61029					9	5	2	0	0	0	0.78798	1	6205	6205		2.2828	0	1	493770			51021	7228	37114	37414	49827	49827					-0.009940974733808616
SRQRFRQF	8	Unmodified	_SRQRFRQF_					0	0	0		ENSG00000232040|ENST00000452236|SCAND3;ENST00000304926.7_1_16:3440119-3447566:-|nuORF;nc|ENSG00000121903|P17040-4|ZSCAN20;ENSG00000140987|ENST00000396852|ZSCAN32;nc|ENSG00000121903|P17040-3|ZSCAN20;ENSG00000121903|ENST00000684572|ZSCAN20	ENSG00000232040|ENST00000452236|SCAND3;ENST00000304926.7_1_16:3440119-3447566:-|nuORF	ENSG00000232040|ENST00000452236|SCAND3	MULTI-SECPEP	A375_MHC_IP_R2	2	376.2646484375	3	375.540579	1123.59991	0.38052	0.0001429	-1.559	-0.00058547	-1.1785	-0.00044257	375.5398497433105	48.056	0.60198	48.817	48.582	49.184	0.76128					15	11	2	0	0	0	0.972	1	18047	18047		6.2058	0.80307	1	2178900			51022	9726;3747	37115	37415	49828	49828					0.043053077543845575
SRQRLSSPW	9	Unmodified	_SRQRLSSPW_					0	0	0			REV__ENST00000452463.5_1_7:137686396-137686669:-|nuORF	REV__ENST00000452463.5_1_7:137686396-137686669:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	373.2683410644531	3	372.868473	1115.58359	-0.052776	-1.9679E-05	-0.056423	-2.1038E-05	-0.1092	-4.0717E-05	372.8684011258004	33.583	0.45501	34.336	34.095	34.55	0.75225					18	8	3	0	0	0	0.775	1	12062	12062		10.8	10.8	1	5491800	+		51023	24901	37116	37416	49829	49829					0.03042181797604826
SRQWHLRRWWR	11	Unmodified	_SRQWHLRRWWR_					0	0	0			REV__ENST00000431361.1_1_20:61432246-61432384:-|nuORF	REV__ENST00000431361.1_1_20:61432246-61432384:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	556.1889038085938	3	556.302786	1665.88653	-0.75598	-0.00042055	1.2355	0.0006873	0.47951	0.00026675	556.3037331970185	129.73	0.50772	129.73	129.3	129.8	0					10	9	2	0	0	0	1.0015	1	49848	49848		0.40827	0.40827	1	4655300	+		51024	24703	37117	37417	49830	49830					0.08022161976532516
SRRALCRLL	9	Unmodified	_SRRALCRLL_					0	0	0		ENST00000480284.1_1_7:156803541-156808623:+|nuORF	ENST00000480284.1_1_7:156803541-156808623:+|nuORF	ENST00000480284.1_1_7:156803541-156808623:+|nuORF	MSMS	A375_MHC_IP_R2	2	363.11956787109375	3	363.222082	1086.64442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.128	1	59.875	59.375	60.375	0.74714								0	0	0	0.15386	1	22375	22375		15.248	4.449	1				51025	12495	37118	37418	49831	49831					0.10455995576216992
SRRALVVWV	9	Unmodified	_SRRALVVWV_					0	0	0			REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF	REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF	MSMS	A375_MHC_IP_R2	2	362.46746826171875	3	362.557459	1084.65055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.586	1	50.343	49.843	50.843	0.75737								0	0	0	0.15486	1	18634	18634		4.897	0.70751	1		+		51026	18703	37119	37419	49832	49832					0.11160837079364683
SRREQSQII	9	Unmodified	_SRREQSQII_					0	0	0		nc|ENSG00000114853|Q9UFB7-2|ZBTB47;ENSG00000114853|ENST00000232974|ZBTB47	nc|ENSG00000114853|Q9UFB7-2|ZBTB47	nc|ENSG00000114853|Q9UFB7-2|ZBTB47	MULTI-MSMS	A375_MHC_IP_R2	2	373.9437561035156	3	372.875516	1115.60472	0.21848	8.1464E-05	2.5093	0.00093567	2.7278	0.0010171	372.8770394701197	34.574	0.81276	35.335	34.862	35.675	0.7608					36	12	4	0	0	0	0.58268	1	12477	12477		15.739	3.498	1	7631100			51027	3250	37120	37420	49833	49833					0.05154147106486562
SRRERWKVKRW	11	Unmodified	_SRRERWKVKRW_					0	0	0			REV__ENST00000377681.7_1_20:18123344-18123419:+|nuORF	REV__ENST00000377681.7_1_20:18123344-18123419:+|nuORF	MSMS	A375_MHC_IP_R2	2	529.6369018554688	3	529.642809	1585.9066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.827	1	62.569	62.069	63.069	0.74263								0	0	0	0.16337	1	23435	23435		0.40827	0.31342	1		+		51028	24165	37121	37421	49834	49834					0.13707912916470377
SRRESQPCPT	10	Unmodified	_SRRESQPCPT_					0	0	0		ENST00000355653.7_1_17:41174317-41174386:-|nuORF	ENST00000355653.7_1_17:41174317-41174386:-|nuORF	ENST00000355653.7_1_17:41174317-41174386:-|nuORF	MSMS	A375_MHC_IP_R2	2	387.417724609375	3	387.520745	1159.5404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.574	1	38.345	37.845	38.845	0.7709								0	0	0	0.15541	1	13759	13759		1.5923	0.37745	1				51029	10954	37122	37422	49835	49835					-0.03298376041971096
SRRGILDP	8	Unmodified	_SRRGILDP_					0	0	0		ENST00000420509.1_1_2:206949343-206949463:+|nuORF	ENST00000420509.1_1_2:206949343-206949463:+|nuORF	ENST00000420509.1_1_2:206949343-206949463:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	457.66461181640625	2	457.264333	912.514114	-0.16701	-7.6366E-05	0.16619	7.5991E-05	-0.00081954	-3.7474E-07	457.2643102122108	108.83	6.2759	109.57	108.24	114.52	0.74683					354	122	3	0	0	0	0.73946	1	41913	41913		23.148	23.148	1	33927000			51030	11726	37123	37423	49836	49836					0.054357228488470355
SRRGPGVP	8	Unmodified	_SRRGPGVP_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1	REV__ENSG00000060709|ENST00000690449|RIMBP2;ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-MSMS	A375_MHC_IP_R2	2	413.63848876953125	2	413.238119	824.461684	0.042849	1.7707E-05	0.14644	6.0515E-05	0.18929	7.8222E-05	413.2380822109322	98.042	4.3213	98.802	97.169	101.49	0.75977					145	84	3	0	0	0	0.77686	1	36772	36772		6.3541	0	1	9036200			51031	16445;4683	37124	37424	49837	49837					0.04243184505912723
SRRHSHRRYT	10	Unmodified	_SRRHSHRRYT_					0	0	0		ENSG00000164548|ENST00000297071|TRA2A	ENSG00000164548|ENST00000297071|TRA2A	ENSG00000164548|ENST00000297071|TRA2A	MULTI-MSMS	A375_MHC_IP_R1	1	452.6418151855469	3	452.576575	1354.7079	-0.36224	-0.00016394	-0.52025	-0.00023545	-0.88248	-0.00039939	452.9104406341082	39.978	0.61071	39.978	39.643	40.254	0					21	11	3	0	0	0	0.71076	1	13702	13702		7.4771	2.7611	1	1993000			51032	6850	37125	37425	49838	49838					0.044730723376460446
SRRKQRKP	8	Unmodified	_SRRKQRKP_					0	0	0		nc|ENSG00000165821|Q9Y467|SALL2	nc|ENSG00000165821|Q9Y467|SALL2	nc|ENSG00000165821|Q9Y467|SALL2	MSMS	A375_MHC_IP_R2	2	528.7283325195312	2	528.330873	1054.64719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.62	1	143.65	143.15	144.15	0.024414								0	0	0	0.16876	1	56124	56124		0.69038	0	1				51033	14739	37126	37426	49839	49839					0.12205587025368914
SRRLAPRRY	9	Unmodified	_SRRLAPRRY_					0	0	0			REV__ENST00000513728.1_1_4:122617758-122618128:-|nuORF	REV__ENST00000513728.1_1_4:122617758-122618128:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	392.5840148925781	3	392.235379	1173.68431	-0.12027	-4.7176E-05	-1.4861	-0.00058291	-1.6064	-0.00063008	392.23527159540487	23.933	0.50734	23.933	23.687	24.194	0					11	9	2	0	0	0	0.69317	1	6715	6715		7.609	0.9855	1	3710300	+		51034	25616	37127	37427	49840	49840					0.10441258571108847
SRRLAPRRY	9	Unmodified	_SRRLAPRRY_					0	0	0			REV__ENST00000513728.1_1_4:122617758-122618128:-|nuORF	REV__ENST00000513728.1_1_4:122617758-122618128:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	391.9667053222656	3	392.235379	1173.68431	-0.12027	-4.7176E-05	-1.4861	-0.00058291	-1.6064	-0.00063008	392.23527159540487	23.933	0.50734	23.933	23.687	24.194	0					11	9	2	0	0	0	0.76187	1	6696	6696		7.609	0	1	3710300	+		51035	25616	37127	37427	49841	49841					0.10441258571108847
SRRLGPPP	8	Unmodified	_SRRLGPPP_					0	0	0		ENST00000572418.1_1_17:3806502-3807261:-|nuORF	ENST00000572418.1_1_17:3806502-3807261:-|nuORF	ENST00000572418.1_1_17:3806502-3807261:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	440.6612548828125	2	440.261594	878.508634	-0.44302	-0.00019504	-0.1437	-6.3265E-05	-0.58671	-0.00025831	440.2615082362183	44.697	0.30525	45.466	45.289	45.594	0.7691					12	5	3	0	0	0	0.77686	1	16715	16715		6.3541	1.5981	1	1758700			51036	13618	37128	37428	49842	49842					0.06452044057039075
SRRLGPPP	8	Unmodified	_SRRLGPPP_					0	0	0		ENST00000572418.1_1_17:3806502-3807261:-|nuORF	ENST00000572418.1_1_17:3806502-3807261:-|nuORF	ENST00000572418.1_1_17:3806502-3807261:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	440.261594	878.508634	0.083079	3.6577E-05	-0.14926	-6.5715E-05	-0.066184	-2.9138E-05	440.2614551289572	45.662	0.30486	45.662	45.534	45.839	0	0.097707	-3.64E-06	NaN	6.3541	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2098700			51037	13618	37128	37428							0.06452044057039075
SRRLSPPP	8	Unmodified	_SRRLSPPP_					0	0	0		ENST00000453168.5_1_3:31574130-31574265:+|nuORF;ENSG00000275793|ENST00000619918|RIMBP3;ENSG00000274600|ENST00000620804|RIMBP3B;ENSG00000183246|ENST00000433039|RIMBP3C	ENST00000453168.5_1_3:31574130-31574265:+|nuORF	ENST00000453168.5_1_3:31574130-31574265:+|nuORF	MSMS	A375_MHC_IP_R2	2	455.6484680175781	2	455.266876	908.519199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.897	1	58.646	58.146	59.146	0.74894								0	0	0	0.16876	1	21897	21897		19.257	0	1				51038	8476	37129	37429	49843	49843					0.06128026711462553
SRRMRTART	9	Unmodified	_SRRMRTART_					0	0	0			REV__ENST00000373271.5_1_20:39794138-39794333:+|nuORF	REV__ENST00000373271.5_1_20:39794138-39794333:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	378.9294128417969	3	378.880607	1133.61999	0.065567	2.4842E-05	1.2785	0.0004844	1.3441	0.00050925	378.88028997615635	32.34	0.66213	33.077	32.654	33.317	0.73692					27	12	3	0	0	0	0.65721	1	11580	11580		7.1017	1.3183	1	14608000	+		51039	24088	37130	37430	49844	49844					0.05852735422672595
SRRQRIIQRN	10	Unmodified	_SRRQRIIQRN_					0	0	0		nc|ENSG00000104812|P13807-2|GYS1;ENSG00000104812|ENST00000323798|GYS1;ENSG00000111713|ENST00000261195|GYS2	nc|ENSG00000104812|P13807-2|GYS1	nc|ENSG00000104812|P13807-2|GYS1	MULTI-SECPEP	A375_MHC_IP_R2	2	664.64111328125	2	663.8949	1325.77525	-0.65806	-0.00043688	1.03	0.00068379	0.37192	0.00024691	663.8953749854535	141.88	0.87077	141.91	141.1	141.98	0.030731					25	16	2	0	0	0	0.94918	1	55428	55428		1.4819	0.15237	1	850990			51040	2538	37131	37431	49845	49845					0.1253910254861239
SRRRKKRFRQE	11	Unmodified	_SRRRKKRFRQE_					0	0	0			REV__nc|ENSG00000186854|Q86V40-2|TRABD2A	REV__nc|ENSG00000186854|Q86V40-2|TRABD2A	MULTI-MSMS	A375_MHC_IP_R1	1	516.709716796875	3	516.309829	1545.90766	-0.79862	-0.00041234	0.37896	0.00019566	-0.41966	-0.00021667	516.3099512136596	133.57	1.2247	133.57	132.84	134.07	0					97	23	6	0	0	0	0.73924	1	51632	51632		0.094841	0.094841	1	71457000	+		51041	21989	37132	37432	49846	49846					0.15654127285415598
SRRRKKRFRQE	11	Unmodified	_SRRRKKRFRQE_					0	0	0			REV__nc|ENSG00000186854|Q86V40-2|TRABD2A	REV__nc|ENSG00000186854|Q86V40-2|TRABD2A	MULTI-MSMS	A375_MHC_IP_R1	1	774.3602294921875	2	773.961106	1545.90766	-0.74317	-0.00057519	0.047975	3.713E-05	-0.6952	-0.00053806	773.9610017020146	134.45	1.7746	134.45	134.02	135.79	0					105	34	5	0	0	0	0.73934	2	51849	51849;52070		0	0	1	51642000	+		51042	21989	37132	37432	49847;49848	49847					0.15654127285415598
SRRRKMLI	8	Unmodified	_SRRRKMLI_					0	0	0		SDCCAG8|p.M99_S100insLIYYA|1|0.1|ENSG00000054282|chr1:243271054-243271055|-/CTGATATATTATGCA|inframe_insertion	SDCCAG8|p.M99_S100insLIYYA|1|0.1|ENSG00000054282|chr1:243271054-243271055|-/CTGATATATTATGCA|inframe_insertion	SDCCAG8|p.M99_S100insLIYYA|1|0.1|ENSG00000054282|chr1:243271054-243271055|-/CTGATATATTATGCA|inframe_insertion	MSMS	A375_MHC_IP_R1	1	353.7778625488281	3	353.890444	1058.6495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.903	1	14.903	14.403	15.403	0								0	0	0	0.16876	1	3423	3423		0	0	1				51043	29123	37133	37433	49849	49849					0.12252299438841874
SRRRLPRRRRL	11	Unmodified	_SRRRLPRRRRL_					0	0	0			REV__ENST00000376771.8_1_X:48398216-48399763:+|nuORF	REV__ENST00000376771.8_1_X:48398216-48399763:+|nuORF	MSMS	A375_MHC_IP_R2	2	507.97998046875	3	507.997697	1520.97126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.61	1	53.362	52.862	53.862	0.75225								0	0	0	0.16355	1	19835	19835		0.073264	0.073264	1		+		51044	24151	37134	37434	49850	49850					0.2316153251315427
SRRRNFDN	8	Unmodified	_SRRRNFDN_					0	0	0		ENSG00000116996|ENST00000366570|ZP4	ENSG00000116996|ENST00000366570|ZP4	ENSG00000116996|ENST00000366570|ZP4	MULTI-SECPEP	A375_MHC_IP_R1	1	1064.109619140625	1	1064.53441	1063.52714	0.11111	0.00011828	-3.8034	-0.0040488	-3.6923	-0.0039305	1065.5328092451628	119.03	0.75982	119.03	118.52	119.28	0					21	14	2	0	0	0	0.95423	1	43710	43710		12.532	4.6214	1	28276000			51045	3450	37135	37435	49851	49851					-0.0020844603905061376
SRRRRQPH	8	Unmodified	_SRRRRQPH_					0	0	0		ENST00000408011.7_1_18:24128932-24129277:-|nuORF	ENST00000408011.7_1_18:24128932-24129277:-|nuORF	ENST00000408011.7_1_18:24128932-24129277:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	364.6105651855469	3	364.879707	1091.61729	-0.41985	-0.0001532	-1.1526	-0.00042056	-1.5725	-0.00057376	364.87962287758626	36.504	1.1672	37.275	36.953	38.12	0.7709					30	22	2	0	0	0	0.972	1	13359	13359		5.7319	5.7319	1	3405600			51046	11614	37136	37436	49852	49852					0.07514648080041297
SRRRRRKRKKT	11	Unmodified	_SRRRRRKRKKT_					0	0	0			REV__nc|ENSG00000028310|Q9H8M2-6|BRD9	REV__nc|ENSG00000028310|Q9H8M2-6|BRD9	MSMS	A375_MHC_IP_R1	1	764.5014038085938	2	764.49819	1526.98183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.26	1	117.26	116.76	117.76	0								0	0	0	0.16355	1	43039	43039		0.26902	0.26902	1		+		51047	27095	37137	37437	49853	49853					0.23941515167575744
SRRRRRPHLPR	11	Unmodified	_SRRRRRPHLPR_					0	0	0		ENST00000397558.6_2_12:120427683-120428022:+|nuORF	ENST00000397558.6_2_12:120427683-120428022:+|nuORF	ENST00000397558.6_2_12:120427683-120428022:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	496.7065734863281	3	496.306531	1485.89776	-0.27988	-0.00013891	0.59855	0.00029706	0.31867	0.00015816	496.3066980327801	149.07	1.9896	149.09	147.92	149.91	0.018707					168	64	4	0	0	0	0.73934	2	57715	57715;57934		0	0	1	281370			51048	11505	37138	37438	49854;49855	49854					0.17424984070680694
SRRRRRPHLPR	11	Unmodified	_SRRRRRPHLPR_					0	0	0		ENST00000397558.6_2_12:120427683-120428022:+|nuORF	ENST00000397558.6_2_12:120427683-120428022:+|nuORF	ENST00000397558.6_2_12:120427683-120428022:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	496.306531	1485.89776	-0.74018	-0.00036736	1.061	0.0005266	0.32086	0.00015925	496.30698384821324	148.98	2.0758	148.98	147.83	149.9	0	-0.055099	0.00032804	NaN	0	154	58	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	472300			51049	11505	37138	37438							0.17424984070680694
SRRRRRRRRRK	11	Unmodified	_SRRRRRRRRRK_					0	0	0		ENSG00000184205|ENST00000375442|TSPYL2	ENSG00000184205|ENST00000375442|TSPYL2	ENSG00000184205|ENST00000375442|TSPYL2	MSMS	A375_MHC_IP_R1	1	820.15673828125	2	820.031054	1638.04756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.19	1	122.19	121.69	122.69	0								0	0	0	0.1636	1	45445	45445		0	0	1				51050	8559	37139	37439	49856	49856					0.25405349133097843
SRRRRRRRRRK	11	Unmodified	_SRRRRRRRRRK_					0	0	0		ENSG00000184205|ENST00000375442|TSPYL2	ENSG00000184205|ENST00000375442|TSPYL2	ENSG00000184205|ENST00000375442|TSPYL2	MSMS	A375_MHC_IP_R1	1	820.054443359375	2	820.031054	1638.04756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.68	1	123.68	123.18	124.18	0								0	0	0	0.1636	1	46261	46261		0	0	1				51051	8559	37139	37439	49857	49857					0.25405349133097843
SRRRRRRRRRV	11	Unmodified	_SRRRRRRRRRV_					0	0	0		ENST00000220562.8_1_8:28559112-28571023:+|nuORF	ENST00000220562.8_1_8:28559112-28571023:+|nuORF	ENST00000220562.8_1_8:28559112-28571023:+|nuORF	MSMS	A375_MHC_IP_R2	2	805.5159912109375	2	805.51778	1609.02101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.015717	1	0.48616	-0.013841	0.98616	0.47044								0	0	0	0.1636	1	5	5		0	0	1				51052	10105	37140	37440	49858	49858					0.24085660241780715
SRRRRRRRRRV	11	Unmodified	_SRRRRRRRRRV_					0	0	0		ENST00000220562.8_1_8:28559112-28571023:+|nuORF	ENST00000220562.8_1_8:28559112-28571023:+|nuORF	ENST00000220562.8_1_8:28559112-28571023:+|nuORF	MSMS	A375_MHC_IP_R2	2	805.51611328125	2	805.51778	1609.02101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.52166	1	0.9921	0.4921	1.4921	0.47044								0	0	0	0.1636	1	171	171		0	0	1				51053	10105	37140	37440	49859	49859					0.24085660241780715
SRRRRRRRRRV	11	Unmodified	_SRRRRRRRRRV_					0	0	0		ENST00000220562.8_1_8:28559112-28571023:+|nuORF	ENST00000220562.8_1_8:28559112-28571023:+|nuORF	ENST00000220562.8_1_8:28559112-28571023:+|nuORF	MSMS	A375_MHC_IP_R2	2	805.5159912109375	2	805.51778	1609.02101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.0284	1	1.4989	0.99889	1.9989	0.47044								0	0	0	0.1636	1	332	332		0	0	1				51054	10105	37140	37440	49860	49860					0.24085660241780715
SRRRRRRRRRV	11	Unmodified	_SRRRRRRRRRV_					0	0	0		ENST00000220562.8_1_8:28559112-28571023:+|nuORF	ENST00000220562.8_1_8:28559112-28571023:+|nuORF	ENST00000220562.8_1_8:28559112-28571023:+|nuORF	MSMS	A375_MHC_IP_R2	2	805.5162963867188	2	805.51778	1609.02101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.5641	1	3.0231	2.5231	3.5231	0.45901								0	0	0	0.1636	1	828	828		0	0	1				51055	10105	37140	37440	49861	49861					0.24085660241780715
SRRRRRRRRRV	11	Unmodified	_SRRRRRRRRRV_					0	0	0		ENST00000220562.8_1_8:28559112-28571023:+|nuORF	ENST00000220562.8_1_8:28559112-28571023:+|nuORF	ENST00000220562.8_1_8:28559112-28571023:+|nuORF	MSMS	A375_MHC_IP_R2	2	805.51611328125	2	805.51778	1609.02101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.0694	1	3.5052	3.0052	4.0052	0.43585								0	0	0	0.1636	1	993	993		0	0	1				51056	10105	37140	37440	49862	49862					0.24085660241780715
SRRRRRRRRRV	11	Unmodified	_SRRRRRRRRRV_					0	0	0		ENST00000220562.8_1_8:28559112-28571023:+|nuORF	ENST00000220562.8_1_8:28559112-28571023:+|nuORF	ENST00000220562.8_1_8:28559112-28571023:+|nuORF	MSMS	A375_MHC_IP_R2	2	805.5161743164062	2	805.51778	1609.02101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.0758	1	3.5117	3.0117	4.0117	0.43585								0	0	0	0.1636	1	995	995		0	0	1				51057	10105	37140	37440	49863	49863					0.24085660241780715
SRRRRRRRRRV	11	Unmodified	_SRRRRRRRRRV_					0	0	0		ENST00000220562.8_1_8:28559112-28571023:+|nuORF	ENST00000220562.8_1_8:28559112-28571023:+|nuORF	ENST00000220562.8_1_8:28559112-28571023:+|nuORF	MSMS	A375_MHC_IP_R2	2	805.5161743164062	2	805.51778	1609.02101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.5797	1	4.0155	3.5155	4.5155	0.43585								0	0	0	0.1636	1	1162	1162		0	0	1				51058	10105	37140	37440	49864	49864					0.24085660241780715
SRRRRRRRRRV	11	Unmodified	_SRRRRRRRRRV_					0	0	0		ENST00000220562.8_1_8:28559112-28571023:+|nuORF	ENST00000220562.8_1_8:28559112-28571023:+|nuORF	ENST00000220562.8_1_8:28559112-28571023:+|nuORF	MSMS	A375_MHC_IP_R2	2	805.516357421875	2	805.51778	1609.02101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.0873	1	4.5231	4.0231	5.0231	0.43585								0	0	0	0.1636	1	1318	1318		0	0	1				51059	10105	37140	37440	49865	49865					0.24085660241780715
SRRRRRRRRRV	11	Unmodified	_SRRRRRRRRRV_					0	0	0		ENST00000220562.8_1_8:28559112-28571023:+|nuORF	ENST00000220562.8_1_8:28559112-28571023:+|nuORF	ENST00000220562.8_1_8:28559112-28571023:+|nuORF	MSMS	A375_MHC_IP_R2	2	805.5160522460938	2	805.51778	1609.02101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.5928	1	6.0097	5.5097	6.5097	0.41691								0	0	0	0.1636	1	1786	1786		0	0	1				51060	10105	37140	37440	49866	49866					0.24085660241780715
SRRRWWLVRFR	11	Unmodified	_SRRRWWLVRFR_					0	0	0			REV__ENST00000307340.7_1_1:215963551-215972328:-|nuORF	REV__ENST00000307340.7_1_1:215963551-215972328:-|nuORF	MSMS	A375_MHC_IP_R2	2	809.5345458984375	2	809.471109	1616.92767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.69	1	137.77	137.27	138.27	0.083969								0	0	0	0.1636	1	54029	54029		0	0	1		+		51061	23474	37141	37441	49867	49867					0.14387923015988235
SRRSWLQN	8	Unmodified	_SRRSWLQN_					0	0	0		ENST00000474414.5_1_1:32849449-32852435:-|nuORF	ENST00000474414.5_1_1:32849449-32852435:-|nuORF	ENST00000474414.5_1_1:32849449-32852435:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	523.7029418945312	2	523.778139	1045.54173	-0.087164	-4.5655E-05	1.9688	0.0010312	1.8816	0.00098557	523.7797596744031	49.434	0.30595	49.434	49.285	49.591	0					9	5	2	0	0	0	0.9187	1	17452	17452		25.399	3.6527	1	667940			51062	12403	37142	37442	49868	49868					0.020776261090986736
SRRTARMKKRR	11	Unmodified	_SRRTARMKKRR_					0	0	0		ENST00000457807.5_1_21:33887267-33887387:+|nuORF	ENST00000457807.5_1_21:33887267-33887387:+|nuORF	ENST00000457807.5_1_21:33887267-33887387:+|nuORF	MSMS	A375_MHC_IP_R1	1	723.5037231445312	2	723.438952	1444.86335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.18	1	146.18	145.68	146.68	0								0	0	0	0.1636	1	55938	55938		0	0	1				51063	12144	37143	37443	49869	49869					0.15871399867546643
SRRVGGRGG	9	Unmodified	_SRRVGGRGG_					0	0	0		ENST00000403681.6_2_12:66218404-66218671:+|nuORF	ENST00000403681.6_2_12:66218404-66218671:+|nuORF	ENST00000403681.6_2_12:66218404-66218671:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	900.9569091796875	1	901.507471	900.500195	-0.22905	-0.00020649	0.8501	0.00076637	0.62105	0.00055988	901.5083596079039	148.13	0.82962	148.14	147.87	148.7	0.018707					35	23	2	0	0	0	0.81896	1	57590	57590		0	0	1	80793			51064	11574	37144	37444	49870	49870					0.04596490140443166
SRRWQRIERKH	11	Unmodified	_SRRWQRIERKH_					0	0	0			REV__nc|ENSG00000165240|Q04656-5|ATP7A	REV__nc|ENSG00000165240|Q04656-5|ATP7A	MULTI-SECPEP	A375_MHC_IP_R2	2	776.8388671875	2	776.440006	1550.86546	-0.87507	-0.00067944	-0.96578	-0.00074987	-1.8408	-0.0014293	776.9405349043592	133.58	0.91286	133.75	133.25	134.16	0.16487					38	17	3	0	0	0	0.99994	1	52541	52541		7.1017	6.7947	1	4603300	+		51065	20565	37145	37445	49871	49871					0.11206151877013326
SRRWSKRTRL	10	Unmodified	_SRRWSKRTRL_					0	0	0			REV__chr1:155212567-155213237|97|11.76|0.58|4.34|+|1|MTX1,MTX1|1	REV__chr1:155212567-155213237|97|11.76|0.58|4.34|+|1|MTX1,MTX1|1	MSMS	A375_MHC_IP_R2	2	673.3306274414062	2	673.399818	1344.78508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.9	1	144.92	144.42	145.42	0.021408								0	0	0	0.15631	1	56587	56587		0.35063	0	1		+		51066	15667	37146	37446	49872	49872					0.12648290553988772
SRRYGPWSI	9	Unmodified	_SRRYGPWSI_					0	0	0		ENST00000587624.5_1_7:64601607-64646883:+|nuORF	ENST00000587624.5_1_7:64601607-64646883:+|nuORF	ENST00000587624.5_1_7:64601607-64646883:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	374.9156799316406	3	374.533202	1120.57778	0.065579	2.4562E-05	0.069118	2.5887E-05	0.1347	5.0449E-05	374.5332072399843	19.155	0.40235	19.758	19.583	19.986	0.60308					14	7	2	0	0	0	0.60101	1	5884	5884		14.405	14.405	1	2520400			51067	13748	37147	37447	49873	49873					0.022310832859375296
SRSAPRPV	8	Unmodified	_SRSAPRPV_					0	0	0			REV__nc|ENSG00000101096|Q13469-5|NFATC2	REV__nc|ENSG00000101096|Q13469-5|NFATC2	MULTI-MSMS	A375_MHC_IP_R1	1	435.651123046875	2	435.251226	868.487899	-0.041176	-1.7922E-05	0.2438	0.00010612	0.20263	8.8194E-05	435.2512280958006	104.22	6.8161	104.22	102.61	109.42	0					311	133	3	0	0	0	0.77741	1	39854	39854		4.3292	0	1	16984000	+		51068	17141	37148	37448	49874	49874					0.04839453677379879
SRSARATWP	9	Unmodified	_SRSARATWP_					0	0	0			REV__ENST00000596517.1_1_19:41305794-41306505:+|nuORF	REV__ENST00000596517.1_1_19:41305794-41306505:+|nuORF	MSMS	A375_MHC_IP_R1	1	516.21826171875	2	516.27269	1030.53083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.807	1	96.807	96.307	97.307	0								0	0	0	0.14169	1	35575	35575		29.082	6.6289	1		+		51069	24441	37149	37449	49875	49875					0.016782237348024864
SRSDIFNDV	9	Unmodified	_SRSDIFNDV_					0	0	0		ENSG00000164187|ENST00000296603|LMBRD2	ENSG00000164187|ENST00000296603|LMBRD2	ENSG00000164187|ENST00000296603|LMBRD2	MULTI-MSMS	A375_MHC_IP_R1	1	526.67431640625	2	526.753995	1051.49344	-0.40033	-0.00021088	0.20242	0.00010663	-0.19791	-0.00010425	526.7540524221364	56.743	1.0694	56.743	56.244	57.313	0					53	20	4	0	0	0	0.0092511	1	20315	20315		103.42	45.697	1	29028000			51070	6798	37150	37450	49876	49876					-0.030249123214844076
SRSELHLKTL	10	Unmodified	_SRSELHLKTL_					0	0	0			REV__ENST00000300738.9_1_11:4123246-4127291:+|nuORF	REV__ENST00000300738.9_1_11:4123246-4127291:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	592.77392578125	2	592.343312	1182.67207	-0.37548	-0.00022241	0.17852	0.00010574	-0.19696	-0.00011667	592.3432334709694	149.56	0.95453	149.58	149.06	150.01	0.018265					105	46	3	0	0	0	0.72416	1	58074	58074		1.4819	0	1	220700	+		51071	23416	37151	37451	49877	49877					0.08804177317438189
SRSELHLKTL	10	Unmodified	_SRSELHLKTL_					0	0	0			REV__ENST00000300738.9_1_11:4123246-4127291:+|nuORF	REV__ENST00000300738.9_1_11:4123246-4127291:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	592.7428588867188	2	592.343312	1182.67207	-0.37548	-0.00022241	0.17852	0.00010574	-0.19696	-0.00011667	592.3432334709694	149.56	0.95453	149.58	149.06	150.01	0.018265					105	46	3	0	0	0	0.94897	1	57948	57948		0.35063	0	1	220700	+		51072	23416	37151	37451	49878	49878					0.08804177317438189
SRSEYLNRL	9	Unmodified	_SRSEYLNRL_					0	0	0		nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2	nc|ENSG00000111641|P46087-3|NOP2	nc|ENSG00000111641|P46087-3|NOP2	MULTI-MSMS	A375_MHC_IP_R1	1	380.2718505859375	3	379.871883	1136.59382	0.25754	9.7831E-05	-0.7623	-0.00028958	-0.50476	-0.00019174	379.87176826932176	32.134	0.51379	32.134	31.819	32.333	0					16	9	2	0	0	0	0.050868	1	10347	10347		51.488	28.83	1	6775200			51073	3004	37152	37452	49879	49879					0.03098744732187697
SRSEYLNRL	9	Unmodified	_SRSEYLNRL_					0	0	0		nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2	nc|ENSG00000111641|P46087-3|NOP2	nc|ENSG00000111641|P46087-3|NOP2	MULTI-MSMS	A375_MHC_IP_R1	1	569.7039794921875	2	569.304187	1136.59382	-0.40649	-0.00023141	-0.64094	-0.00036489	-1.0474	-0.0005963	569.3037706672861	32.086	0.41196	32.086	31.87	32.282	0					12	7	2	0	0	0	0.2989	1	10361	10361		30.703	14.554	1	1915000			51074	3004	37152	37452	49880	49880					0.03098744732187697
SRSEYLNRL	9	Unmodified	_SRSEYLNRL_					0	0	0		nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2	nc|ENSG00000111641|P46087-3|NOP2	nc|ENSG00000111641|P46087-3|NOP2	MULTI-MSMS	A375_MHC_IP_R2	2	380.2718505859375	3	379.871883	1136.59382	0.014725	5.5936E-06	-0.056928	-2.1625E-05	-0.042203	-1.6032E-05	379.87177658431136	31.231	0.56189	31.949	31.821	32.383	0.71857					16	10	2	0	0	0	0.094655	1	11055	11055		40.725	21.363	1	6247200			51075	3004	37152	37452	49881	49881					0.03098744732187697
SRSEYLNRL	9	Unmodified	_SRSEYLNRL_					0	0	0		nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2	nc|ENSG00000111641|P46087-3|NOP2	nc|ENSG00000111641|P46087-3|NOP2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	569.304187	1136.59382	-0.36713	-0.00020901	-0.88333	-0.00050288	-1.2505	-0.00071189	569.3036394000835	31.281	0.35869	32	31.821	32.18	0.71857	-0.043027	-0.00016625	NaN	30.703	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2408100			51076	3004	37152	37452							0.03098744732187697
SRSFTKGCEKC	11	Unmodified	_SRSFTKGCEKC_					0	0	0			REV__ENSG00000196110|ENST00000591998|ZNF699	REV__ENSG00000196110|ENST00000591998|ZNF699	MSMS	A375_MHC_IP_R1	1	623.30029296875	2	623.289365	1244.56418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.41	1	148.41	147.91	148.91	0								0	0	0	0.16341	1	56673	56673		0.96228	0	1		+		51077	22159	37153	37453	49882	49882					-0.04832278599815254
SRSGGVVKNN	10	Unmodified	_SRSGGVVKNN_					0	0	0		nc|ENSG00000110680|P06881|CALCA	nc|ENSG00000110680|P06881|CALCA	nc|ENSG00000110680|P06881|CALCA	MSMS	A375_MHC_IP_R2	2	509.2227783203125	2	509.275429	1016.53631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.26	1	134.4	133.9	134.9	0.13901								0	0	0	0.15479	1	52815	52815		5.2969	0.54088	1				51078	14539	37154	37454	49883	49883					0.02869902526617807
SRSGKINFIR	10	Unmodified	_SRSGKINFIR_					0	0	0			REV__LRRK1|p.I1366Nfs*21|1|0.31|ENSG00000154237|chr15:101054981-101054982|-/A|frameshift_variant	REV__LRRK1|p.I1366Nfs*21|1|0.31|ENSG00000154237|chr15:101054981-101054982|-/A|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	589.7429809570312	2	589.343646	1176.67274	-0.42685	-0.00025156	-0.82974	-0.000489	-1.2566	-0.00074056	589.3430052761335	129.12	2.9462	129.12	128.38	131.33	0					231	57	6	0	0	0	0.72078	1	50042	50042		2.9952	0	1	1725099999.9999998	+		51079	19871	37155	37455	49884	49884					0.09147016757128767
SRSGLLPW	8	Unmodified	_SRSGLLPW_					0	0	0			REV__ENST00000415811.7_2_17:45012662-45012788:+|nuORF	REV__ENST00000415811.7_2_17:45012662-45012788:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	458.65557861328125	2	458.255977	914.497401	-0.35425	-0.00016234	0.1329	6.0904E-05	-0.22135	-0.00010144	458.2559092391442	28.209	0.65452	28.209	27.887	28.541	0					27	12	3	0	0	0	0.71451	1	8656	8656		30.225	3.3412	1	9135500	+		51080	24524	37156	37456	49885	49885					0.03673221962901607
SRSGSRKRKHR	11	Unmodified	_SRSGSRKRKHR_					0	0	0		nc|ENSG00000213079|Q9UPN6-2|SCAF8;ENSG00000213079|ENST00000367178|SCAF8	nc|ENSG00000213079|Q9UPN6-2|SCAF8	nc|ENSG00000213079|Q9UPN6-2|SCAF8	MSMS	A375_MHC_IP_R2	2	677.79541015625	2	677.897974	1353.7814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.22	1	139.28	138.78	139.78	0.059906								0	0	0	0.16341	1	54555	54555		0.96228	0.50394	1				51081	14893	37157	37457	49886	49886					0.11865620780122299
SRSHRESPRR	10	Unmodified	_SRSHRESPRR_					0	0	0		CCNL1|p.S434R|1|0.08|ENSG00000163660|chr3:157148520-157148520|A/C|missense_variant	CCNL1|p.S434R|1|0.08|ENSG00000163660|chr3:157148520-157148520|A/C|missense_variant	CCNL1|p.S434R|1|0.08|ENSG00000163660|chr3:157148520-157148520|A/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	633.7374877929688	2	634.339958	1266.66536	-0.81447	-0.00051665	-2.007	-0.0012731	-2.8215	-0.0017898	634.3389739841908	130.05	0.9606	130.27	129.74	130.7	0.2142					23	14	4	0	0	0	0.72078	1	51198	51198		2.9952	0	1	23926000			51082	324	37158	37458	49887	49887					0.04269677209413203
SRSIRQYY	8	Unmodified	_SRSIRQYY_					0	0	0		nc|ENSG00000124664|O95238-2|SPDEF;ENSG00000124664|ENST00000374037|SPDEF	nc|ENSG00000124664|O95238-2|SPDEF	nc|ENSG00000124664|O95238-2|SPDEF	MULTI-SECPEP	A375_MHC_IP_R1	1	358.2402038574219	3	358.189324	1071.54614	0.29363	0.00010518	-0.77228	-0.00027662	-0.47864	-0.00017145	358.18888825276457	21.275	0.30583	21.275	21.148	21.454	0					7	5	2	0	0	0	0.95423	1	5639	5639		9.3831	0.93882	1	671350			51083	3921	37159	37459	49888	49888					0.01323090531991511
SRSLVLNRL	9	Unmodified	_SRSLVLNRL_					0	0	0		ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	MULTI-MSMS	A375_MHC_IP_R1	1	353.6204833984375	3	353.220735	1056.64038	0.13282	4.6915E-05	0.23623	8.3441E-05	0.36905	0.00013036	353.2207867237435	43.171	0.61056	43.171	42.891	43.502	0					27	11	4	0	0	0	0.16286	1	14965	14965		40.725	13.502	1	13144000			51084	1029	37160	37460	49889	49889					0.11432229354136325
SRSLVLNRL	9	Unmodified	_SRSLVLNRL_					0	0	0		ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	MULTI-MSMS	A375_MHC_IP_R2	2	353.6206970214844	3	353.220735	1056.64038	-0.17107	-6.0426E-05	-0.12548	-4.4322E-05	-0.29655	-0.00010475	353.2206667487862	42.108	0.56207	42.88	42.605	43.167	0.77259					23	10	3	0	0	0	0.16286	1	15652	15652		40.725	0.4857	1	11118000			51085	1029	37160	37460	49890	49890					0.11432229354136325
SRSPHKRKRN	10	Unmodified	_SRSPHKRKRN_					0	0	0		ENSG00000168566|ENST00000342415|SNRNP48	ENSG00000168566|ENST00000342415|SNRNP48	ENSG00000168566|ENST00000342415|SNRNP48	MULTI-MSMS	A375_MHC_IP_R2	2	1266.1297607421875	1	1265.72976	1264.72248	0.26635	0.00033712	0.82638	0.001046	1.0927	0.0013831	1265.7303158242248	130.87	1.0698	131.09	130.75	131.82	0.2142					35	20	3	0	0	0	0.72607	1	51678	51678		1.4819	0	1	25299000			51086	7321	37161	37461	49891	49891					0.10071144485800687
SRSPHKRKRN	10	Unmodified	_SRSPHKRKRN_					0	0	0		ENSG00000168566|ENST00000342415|SNRNP48	ENSG00000168566|ENST00000342415|SNRNP48	ENSG00000168566|ENST00000342415|SNRNP48	MULTI-MATCH	A375_MHC_IP_R1	1		1	1265.72976	1264.72248	-0.2409	-0.00030491	1.8605	0.0023549	1.6196	0.0020499	1265.7322035043535	130.9	0.80978	130.9	130.72	131.53	0	-0.09486	0.0010647	NaN	1.4819	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14673000			51087	7321	37161	37461							0.10071144485800687
SRSPHKRKRN	10	Unmodified	_SRSPHKRKRN_					0	0	0		ENSG00000168566|ENST00000342415|SNRNP48	ENSG00000168566|ENST00000342415|SNRNP48	ENSG00000168566|ENST00000342415|SNRNP48	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	1265.72976	1264.72248	0.26635	0.00033712	0.82638	0.001046	1.0927	0.0013831	1265.7303158242248	130.87	1.0698	131.09	130.75	131.82	0.2142	0.09486	-0.00024416	NaN	1.4819	35	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25299000			51088	7321	37161	37461							0.10071144485800687
SRSQAPYGTL	10	Unmodified	_SRSQAPYGTL_					0	0	0		ENSG00000148840|ENST00000278070|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	MULTI-MSMS	A375_MHC_IP_R2	2	541.2000122070312	2	540.277638	1078.54072	-0.74497	-0.00040249	-0.40652	-0.00021964	-1.1515	-0.00062213	540.277168820997	69.027	0.50734	69.762	69.575	70.082	0.73511					23	9	3	0	0	0	0.60608	1	26216	26216		20.415	2.0414	1	4041800			51089	5768	37162	37462	49892	49892					0.00459366949530704
SRSQLILTPEK	11	Unmodified	_SRSQLILTPEK_					0	0	0		ENST00000306910.8_1_19:58928465-58928570:+|nuORF	ENST00000306910.8_1_19:58928465-58928570:+|nuORF	ENST00000306910.8_1_19:58928465-58928570:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	636.7998046875	2	636.369527	1270.7245	-0.59249	-0.00037704	-0.3355	-0.0002135	-0.92799	-0.00059054	636.3691547482736	149.46	1.5337	149.48	148.48	150.01	0.01825					161	58	3	0	0	0	0.73809	2	57797	57797;58037		1.1933	0	1	537760			51090	10583	37163	37463	49893;49894	49893					0.09996715660372502
SRSREHRRH	9	Unmodified	_SRSREHRRH_					0	0	0		ENST00000482860.1_1_7:139102272-139107083:+|nuORF;nc|ENSG00000269955|Q9Y383-3|LUC7L2;nc|ENSG00000269955|Q9Y383-2|LUC7L2;ENSG00000146963|ENST00000354926|LUC7L2;nc|ENSG00000164898|Q96HJ9-2|FMC1	ENST00000482860.1_1_7:139102272-139107083:+|nuORF	ENST00000482860.1_1_7:139102272-139107083:+|nuORF	MSMS	A375_MHC_IP_R1	1	407.6361999511719	3	407.553771	1219.63948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.134	1	23.134	22.634	23.634	0								0	0	0	0.15411	1	6301	6301		10.151	0	1				51091	5648	37164	37464	49895	49895					0.038448277578027046
SRSREWSRRR	10	Unmodified	_SRSREWSRRR_					0	0	0			REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18	REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18	MSMS	A375_MHC_IP_R2	2	688.312744140625	2	688.374332	1374.73411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.03	1	143.06	142.56	143.56	0.030731								0	0	0	0.15539	1	55910	55910		3.2813	0.28607	1		+		51092	17346	37165	37465	49896	49896					0.061733415091111965
SRSRQVLTGFI	11	Unmodified	_SRSRQVLTGFI_					0	0	0			REV__ENST00000526579.5_1_11:130748389-130775881:-|nuORF	REV__ENST00000526579.5_1_11:130748389-130775881:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	633.096435546875	2	632.362036	1262.70952	-0.92971	-0.00058791	-1.0151	-0.00064193	-1.9448	-0.0012298	632.361328315066	135.31	1.426	135.31	134.83	136.25	0					36	27	2	0	0	0	0.99507	1	52170	52170		4.5289	1.7937	1	1632400	+		51093	25774	37166	37466	49897	49897					0.08867268583048826
SRSRRRRYRY	10	Unmodified	_SRSRRRRYRY_					0	0	0			REV__ENSG00000075461|ENST00000262138|CACNG4	REV__ENSG00000075461|ENST00000262138|CACNG4	MULTI-MSMS	A375_MHC_IP_R1	1	486.3426513671875	3	485.943258	1454.80794	-0.50635	-0.00024606	0.1564	7.6001E-05	-0.34995	-0.00017005	485.943194828307	133.35	1.0199	133.35	133	134.02	0					41	19	3	0	0	0	0.72416	1	51428	51428		0.62683	0	1	2117700	+		51094	16657	37167	37467	49898	49898					0.09873309671479547
SRSRRRRYRY	10	Unmodified	_SRSRRRRYRY_					0	0	0			REV__ENSG00000075461|ENST00000262138|CACNG4	REV__ENSG00000075461|ENST00000262138|CACNG4	MULTI-MSMS	A375_MHC_IP_R2	2	486.34295654296875	3	485.943258	1454.80794	-0.5272	-0.00025619	0.04564	2.2179E-05	-0.48156	-0.00023401	485.94325566095796	133.49	0.9639	133.66	133.15	134.11	0.16487					41	18	3	0	0	0	0.72416	1	52551	52551		0.62683	0.62683	1	2837900	+		51095	16657	37167	37467	49899	49899					0.09873309671479547
SRSRRRYRFR	10	Unmodified	_SRSRRRYRFR_					0	0	0			REV__ENSG00000142408|ENST00000270458|CACNG8	REV__ENSG00000142408|ENST00000270458|CACNG8	MULTI-MSMS	A375_MHC_IP_R1	1	480.69525146484375	3	480.61162	1438.81303	-0.66958	-0.00032181	-0.11746	-5.6455E-05	-0.78704	-0.00037826	480.6115767834696	133.98	0.70978	133.98	133.76	134.47	0					17	13	2	0	0	0	0.72416	1	51592	51592		0.62683	0	1	3539500	+		51096	19307	37168	37468	49900	49900					0.11117613534042903
SRSRSPDI	8	Unmodified	_SRSRSPDI_					0	0	0		ENSG00000129595|ENST00000261486|EPB41L4A;ENST00000515047.5_1_5:111505996-111519813:-|nuORF;ENST00000507810.5_1_5:111479536-111545647:-|nuORF	ENSG00000129595|ENST00000261486|EPB41L4A	ENSG00000129595|ENST00000261486|EPB41L4A	MSMS	A375_MHC_IP_R1	1	459.461181640625	2	459.243598	916.472643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.82	1	22.82	22.32	23.32	0								0	0	0	0.16876	1	6167	6167		4.3292	0	1				51097	4200	37169	37469	49901	49901					0.011065420895192801
SRSVIIREL	9	Unmodified	_SRSVIIREL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.S1656Tfs*30|1|0.09|ENSG00000104517|chr8:102286608-102286609|-/GG|frameshift_variant;ENST00000518145.1_1_8:103358389-103359193:-|nuORF	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	A375_MHC_IP_R1	1	358.62060546875	3	358.220624	1071.64004	-0.019597	-7.02E-06	-0.052411	-1.8775E-05	-0.072008	-2.5795E-05	358.22056791005605	41.957	0.96599	41.957	41.571	42.537	0					50	18	5	0	0	0	0.035228	1	14476	14476		70.496	36.274	1	87009000			51098	2516	37170	37470	49902	49902					0.10708809634297722
SRSVIIREL	9	Unmodified	_SRSVIIREL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.S1656Tfs*30|1|0.09|ENSG00000104517|chr8:102286608-102286609|-/GG|frameshift_variant;ENST00000518145.1_1_8:103358389-103359193:-|nuORF	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-SECPEP	A375_MHC_IP_R1	1	537.2268676757812	2	536.827298	1071.64004	-0.79119	-0.00042473	0.20155	0.0001082	-0.58963	-0.00031653	536.8274011624048	41.956	0.66208	41.956	41.674	42.336	0					31	12	4	0	0	0	0.41439	1	14494	14494		47.732	11.226	1	38723000			51099	2516	37170	37470	49903	49903					0.10708809634297722
SRSVIIREL	9	Unmodified	_SRSVIIREL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.S1656Tfs*30|1|0.09|ENSG00000104517|chr8:102286608-102286609|-/GG|frameshift_variant;ENST00000518145.1_1_8:103358389-103359193:-|nuORF	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-SECPEP	A375_MHC_IP_R2	2	358.6203308105469	3	358.220624	1071.64004	-0.45315	-0.00016233	-0.15421	-5.5241E-05	-0.60736	-0.00021757	358.22054675201514	40.989	0.86205	41.763	41.438	42.3	0.77451					44	16	4	0	0	0	0.051108	1	15158	15158		96.034	53.722	1	71252000			51100	2516	37170	37470	49904	49904					0.10708809634297722
SRSVIIREL	9	Unmodified	_SRSVIIREL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.S1656Tfs*30|1|0.09|ENSG00000104517|chr8:102286608-102286609|-/GG|frameshift_variant;ENST00000518145.1_1_8:103358389-103359193:-|nuORF	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-SECPEP	A375_MHC_IP_R2	2	537.2265014648438	2	536.827298	1071.64004	-1.1238	-0.00060328	0.019308	1.0365E-05	-1.1045	-0.00059291	536.8273052173138	40.972	0.50746	41.746	41.489	41.997	0.77451					28	9	4	0	0	0	0.22724	1	15168	15168		74.772	34.533	1	26944000			51101	2516	37170	37470	49905	49905					0.10708809634297722
SRSVNSVLLF	10	Unmodified	_SRSVNSVLLF_					0	0	0		ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF	ENSG00000104824|ENST00000221419|HNRNPL	ENSG00000104824|ENST00000221419|HNRNPL	MULTI-MSMS	A375_MHC_IP_R1	1	374.9160461425781	3	374.548629	1120.62406	0.33232	0.00012447	-0.1297	-4.8578E-05	0.20262	7.589E-05	374.54856850834926	19.985	0.71026	19.985	19.674	20.384	0					20	13	2	0	0	0	0.72061	1	5160	5160		3.0723	0	1	3843000			51102	2539	37171	37471	49906	49906					0.06857103397373976
SRSVPLLAEQK	11	Unmodified	_SRSVPLLAEQK_					0	0	0		ZNF831|p.P1195L|1|0.17|ENSG00000124203|chr20:59194603-59194603|C/T|missense_variant	ZNF831|p.P1195L|1|0.17|ENSG00000124203|chr20:59194603-59194603|C/T|missense_variant	ZNF831|p.P1195L|1|0.17|ENSG00000124203|chr20:59194603-59194603|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	614.7865600585938	2	614.356419	1226.69829	-0.39135	-0.00024043	-0.4706	-0.00028912	-0.86195	-0.00052955	614.3560521575944	149.65	1.6195	149.67	148.39	150.01	0.01825					113	60	2	0	0	0	0.73672	2	58068	58068;58078		2.4985	2.4985	1	362470			51103	30250	37172	37472	49907;49908	49907					0.09400446488893976
SRSYRSRSRSR	11	Unmodified	_SRSYRSRSRSR_					0	0	0			REV__nc|ENSG00000161547|Q01130-2|SRSF2	REV__nc|ENSG00000161547|Q01130-2|SRSF2	MULTI-MSMS	A375_MHC_IP_R2	2	699.8074951171875	2	699.377072	1396.73959	-0.69355	-0.00048505	1.2624	0.00088288	0.56883	0.00039783	699.378171147759	131.26	1.0184	131.45	130.88	131.9	0.18953					31	19	2	0	0	0	0.7342	1	51593	51593		4.897	0	1	5283600	+		51104	20212	37173	37473	49909	49909					0.05709020300946577
SRSYRSRSRSR	11	Unmodified	_SRSYRSRSRSR_					0	0	0			REV__nc|ENSG00000161547|Q01130-2|SRSF2	REV__nc|ENSG00000161547|Q01130-2|SRSF2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	699.377072	1396.73959	-0.84235	-0.00058912	1.4201	0.00099319	0.57775	0.00040407	699.3783336938013	131.42	0.80898	131.42	131.02	131.83	0	-0.014037	7.9319E-05	NaN	4.897	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4606000	+		51105	20212	37173	37473							0.05709020300946577
SRTLALISSRE	11	Unmodified	_SRTLALISSRE_					0	0	0		ENST00000253401.10_1_X:62974200-62974368:-|nuORF	ENST00000253401.10_1_X:62974200-62974368:-|nuORF	ENST00000253401.10_1_X:62974200-62974368:-|nuORF	MSMS	A375_MHC_IP_R1	1	616.8504028320312	2	616.851501	1231.68845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.43	1	121.43	120.93	121.93	0								0	0	0	0.14479	1	45089	45089		23.79	1.0535	1				51106	10217	37174	37474	49910	49910					0.08187258483508231
SRTMESESL	9	Unmodified	_SRTMESESL_					0	0	0		ENSG00000196664|ENST00000380659|TLR7	ENSG00000196664|ENST00000380659|TLR7	ENSG00000196664|ENST00000380659|TLR7	MULTI-MSMS	A375_MHC_IP_R1	1	521.2739868164062	2	520.239864	1038.46517	-0.34172	-0.00017778	-1.1175	-0.00058138	-1.4593	-0.00075916	520.2396487007703	78.492	0.80974	78.492	78.15	78.96	0					37	15	4	0	0	0	0.72985	1	28548	28548		4.3292	0	1	9011000			51107	9073	37175	37475	49911	49911					-0.052519782930630754
SRVEINIKM	9	Unmodified	_SRVEINIKM_					0	0	0			REV__EPHB2|p.T161I|1|0.1|ENSG00000133216|chr1:22784747-22784747|C/T|missense_variant	REV__EPHB2|p.T161I|1|0.1|ENSG00000133216|chr1:22784747-22784747|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	364.6048889160156	3	363.874348	1088.60121	0.38768	0.00014107	3.8578	0.0014038	4.2455	0.0015448	364.21088949138704	43.069	0.6105	43.069	42.942	43.553	0					15	11	2	0	0	0	0.57806	1	15140	15140		19.626	0	1	1306100	+		51108	26584	37176	37476	49912	49912					0.060457610082494284
SRVIVQQPG	9	Unmodified	_SRVIVQQPG_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	A375_MHC_IP_R2	2	492.6853942871094	2	492.285266	982.555979	-0.48465	-0.00023859	0.34085	0.0001678	-0.1438	-7.0791E-05	492.2852131277663	131.62	3.5099	131.81	131.14	134.65	0.18953					97	68	3	0	0	0	0.73415	1	51717	51717		3.9444	0	1	7744400			51109	8031	37177	37477	49913	49913					0.06400278537375925
SRWEYYDLVYT	11	Unmodified	_SRWEYYDLVYT_					0	0	0		DPP4|p.S664L|1|0.52|ENSG00000197635|chr2:162005806-162005806|G/A|missense_variant	DPP4|p.S664L|1|0.52|ENSG00000197635|chr2:162005806-162005806|G/A|missense_variant	DPP4|p.S664L|1|0.52|ENSG00000197635|chr2:162005806-162005806|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	499.3009948730469	3	498.901508	1493.6827	-0.47075	-0.00023486	-0.47742	-0.00023819	-0.94817	-0.00047304	498.90124570548943	46.579	0.70644	46.579	46.195	46.901	0					23	13	2	0	0	0	1.0005	1	16300	16300		1.1098	0	1	5059000			51110	791	37178	37478	49914	49914					-0.04439884818839346
SRWEYYDLVYT	11	Unmodified	_SRWEYYDLVYT_					0	0	0		DPP4|p.S664L|1|0.52|ENSG00000197635|chr2:162005806-162005806|G/A|missense_variant	DPP4|p.S664L|1|0.52|ENSG00000197635|chr2:162005806-162005806|G/A|missense_variant	DPP4|p.S664L|1|0.52|ENSG00000197635|chr2:162005806-162005806|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	498.901508	1493.6827	-0.52007	-0.00025946	-0.61163	-0.00030514	-1.1317	-0.00056461	498.90125367607664	45.771	0.75568	46.536	46.15	46.906	0.76519	-0.021478	-0.00011427	NaN	1.1098	37	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5833800			51111	791	37178	37478							-0.04439884818839346
SRWRIFQIL	9	Unmodified	_SRWRIFQIL_					0	0	0		nc|ENSG00000171004|Q96MM7-3|HS6ST2;ENSG00000171004|ENST00000370833|HS6ST2	nc|ENSG00000171004|Q96MM7-3|HS6ST2	nc|ENSG00000171004|Q96MM7-3|HS6ST2	MULTI-MSMS	A375_MHC_IP_R1	1	407.64251708984375	3	406.90838	1217.70331	0.0017351	7.0603E-07	0.41879	0.00017041	0.42052	0.00017112	406.90855064269	69.045	1.7762	69.045	68.666	70.442	0					85	34	4	0	0	0	0.56584	1	25189	25189		16.566	2.1605	1	62668000			51112	7566	37179	37479	49915	49915					0.10316795142171031
SRYDYSRRPD	10	Unmodified	_SRYDYSRRPD_					0	0	0			REV__ENSG00000123572|ENST00000243300|NRK	REV__ENSG00000123572|ENST00000243300|NRK	MULTI-SECPEP	A375_MHC_IP_R1	1	439.6141052246094	3	438.877697	1313.61126	-0.41757	-0.00018326	1.4127	0.00062001	0.99516	0.00043675	439.2134145673649	23.61	0.51039	23.61	23.227	23.737	0					11	9	2	0	0	0	0.93873	1	6439	6439		7.9454	1.315	1	3979500	+		51113	18249	37180	37480	49916	49916					-0.03299959732817115
SRYFDENIQKF	11	Unmodified	_SRYFDENIQKF_					0	0	0		ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	MULTI-SECPEP	A375_MHC_IP_R1	1	482.1867370605469	3	482.905253	1445.69393	-0.37956	-0.00018329	0.45548	0.00021995	0.075924	3.6664E-05	483.23998503227244	64.529	0.50799	64.529	64.292	64.8	0					12	9	2	0	0	0	0.99945	1	23415	23415		4.1166	4.0333	1	1066900			51114	8342	37181	37481	49917	49917					-0.011090627246858276
SRYFDENIQKF	11	Unmodified	_SRYFDENIQKF_					0	0	0		ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	MULTI-MATCH	A375_MHC_IP_R2	2		3	482.905253	1445.69393	-0.51188	-0.00024719	0.65273	0.00031521	0.14086	6.802E-05	482.9051514363405	63.912	0.40562	64.652	64.496	64.902	0.74022	0.061488	0.00016305	NaN	4.1166	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1118400			51115	8342	37181	37481							-0.011090627246858276
SRYGDIRRL	9	Unmodified	_SRYGDIRRL_					0	0	0		ENSG00000184209|ENST00000526639|SNRNP35;nc|ENSG00000184209|Q16560-2|SNRNP35	ENSG00000184209|ENST00000526639|SNRNP35	ENSG00000184209|ENST00000526639|SNRNP35	MULTI-SECPEP	A375_MHC_IP_R1	1	379.6159362792969	3	379.215873	1134.62579	0.36158	0.00013712	-0.413	-0.00015662	-0.05142	-1.9499E-05	379.2157185717058	25.179	0.96477	25.179	24.801	25.765	0					49	18	5	0	0	0	0.077986	1	7299	7299		73.196	55.754	1	98545000			51116	8561	37182	37482	49918	49918					0.06386157205997733
SRYGDIRRL	9	Unmodified	_SRYGDIRRL_					0	0	0		ENSG00000184209|ENST00000526639|SNRNP35;nc|ENSG00000184209|Q16560-2|SNRNP35	ENSG00000184209|ENST00000526639|SNRNP35	ENSG00000184209|ENST00000526639|SNRNP35	MULTI-MSMS	A375_MHC_IP_R2	2	379.580322265625	3	379.215873	1134.62579	-0.27764	-0.00010529	-0.27616	-0.00010472	-0.5538	-0.00021001	379.21577098920807	24.543	0.91521	25.187	24.958	25.873	0.64368					44	17	4	0	0	0	0.52905	1	8253	8253		18.373	18.373	1	88284000			51117	8561	37182	37482	49919	49919					0.06386157205997733
SRYGRVNYV	9	Unmodified	_SRYGRVNYV_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-SECPEP	A375_MHC_IP_R2	2	372.3020935058594	3	371.86484	1112.57269	0.038235	1.4218E-05	1.0868	0.00040416	1.1251	0.00041838	371.86526761182597	25	0.71218	25.644	25.212	25.924	0.64368					21	13	2	0	0	0	0.56537	1	8165	8165		8.4443	1.8139	1	3015900			51118	1066	37183	37483	49920	49920					0.020907794233153254
SRYLLDNPD	9	Unmodified	_SRYLLDNPD_					0	0	0		ENSG00000139160|ENST00000357721|ETFBKMT	ENSG00000139160|ENST00000357721|ETFBKMT	ENSG00000139160|ENST00000357721|ETFBKMT	MULTI-MSMS	A375_MHC_IP_R1	1	547.1693725585938	2	546.769645	1091.52474	-0.51245	-0.00028019	1.0957	0.00059912	0.58329	0.00031893	546.7697152903843	61.794	0.76602	61.794	61.432	62.198	0					32	14	3	0	0	0	0.29123	1	22291	22291		31.268	1.0435	1	2751500			51119	5054	37184	37484	49921	49921					-0.017363392873676275
SRYLLDNPD	9	Unmodified	_SRYLLDNPD_					0	0	0		ENSG00000139160|ENST00000357721|ETFBKMT	ENSG00000139160|ENST00000357721|ETFBKMT	ENSG00000139160|ENST00000357721|ETFBKMT	MULTI-MSMS	A375_MHC_IP_R2	2	547.1690063476562	2	546.769645	1091.52474	-1.0934	-0.00059784	0.78238	0.00042778	-0.31102	-0.00017006	546.7695331514279	60.998	1.012	61.743	61.109	62.121	0.74503					35	19	3	0	0	0	0.2415	1	23124	23124		34.932	4.7073	1	3341000			51120	5054	37184	37484	49922	49922					-0.017363392873676275
SRYPNGHFV	9	Unmodified	_SRYPNGHFV_					0	0	0		nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	MULTI-SECPEP	A375_MHC_IP_R1	1	359.9293518066406	3	359.513919	1075.51993	0.015986	5.7472E-06	-0.5376	-0.00019327	-0.52161	-0.00018753	359.5136355100357	27.241	0.4048	27.241	27.078	27.482	0					12	7	2	0	0	0	0.77396	1	8313	8313		6.6304	5.6681	1	2411100			51121	1779	37185	37485	49923	49923					-0.014811786394830051
SRYVLWKR	8	Unmodified	_SRYVLWKR_					0	0	0		ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	MSMS	A375_MHC_IP_R1	1	369.9302673339844	3	369.885576	1106.6349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.101	1	21.101	20.601	21.601	0								0	0	0	0.16876	1	5502	5502		4.5289	0.41224	1				51122	10039	37186	37486	49924	49924					0.08584550562318327
SRYYYYMWKYI	11	Unmodified	_SRYYYYMWKYI_					0	0	0		ENSG00000072041|ENST00000266682|SLC6A15;nc|ENSG00000072041|Q9H2J7-3|SLC6A15	ENSG00000072041|ENST00000266682|SLC6A15	ENSG00000072041|ENST00000266682|SLC6A15	MSMS	A375_MHC_IP_R1	1	545.9322509765625	3	545.927	1634.75917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.28	1	85.28	84.78	85.78	0								0	0	0	0.16334	1	31251	31251		1.3296	0.82369	1				51123	1525	37187	37487	49925	49925					-0.03281784523187525
SSAADFSGFG	10	Unmodified	_SSAADFSGFG_					0	0	0		nc|ENSG00000196313|Q96HA1-2|POM121;ENSG00000272391|ENST00000615331|POM121C;nc|ENSG00000196313|Q96HA1-3|POM121;nc|ENSG00000272391|A8CG34|POM121C;ENSG00000196313|ENST00000434423|POM121;ENST00000411631.2_7:72711017-72715158:+|nuORF;nc|ENSG00000205578|A6NF01|POM121B	nc|ENSG00000196313|Q96HA1-2|POM121	nc|ENSG00000196313|Q96HA1-2|POM121	MSMS	A375_MHC_IP_R1	1	473.17974853515625	2	473.201064	944.387576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.007	1	42.007	41.507	42.507	0								0	0	0	0.15332	1	14535	14535		10.074	0.6908	1				51124	9026	37188	37488	49926	49926					-0.08684248166935049
SSAGCCSWC	9	Unmodified	_SSAGCCSWC_					0	0	0		ENST00000336838.10_1_2:55646279-55646603:-|nuORF	ENST00000336838.10_1_2:55646279-55646603:-|nuORF	ENST00000336838.10_1_2:55646279-55646603:-|nuORF	MSMS	A375_MHC_IP_R2	2	452.11627197265625	2	452.143323	902.272094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.583	1	40.358	39.858	40.858	0.77451								0	0	0	0.15486	1	14622	14622		2.0598	1.2661	1				51125	10823	37189	37489	49927	49927					-0.18295134885454445
SSAGKGKK	8	Unmodified	_SSAGKGKK_					0	0	0			REV__nc|ENSG00000108582|O75976-2|CPD	REV__nc|ENSG00000108582|O75976-2|CPD	MULTI-MSMS	A375_MHC_IP_R1	1	762.8445434570312	1	762.446828	761.439552	-0.84702	-0.00064581	-1.5466	-0.0011792	-2.3937	-0.001825	762.4452589738827	146.9	0.13858	146.9	146.82	146.96	0					15	12	2	0	0	0	0.77842	1	56185	56185		0.69038	0	1	135570	+		51126	17541	37190	37490	49928	49928					0.04928960037466368
SSAGKGKK	8	Unmodified	_SSAGKGKK_					0	0	0			REV__nc|ENSG00000108582|O75976-2|CPD	REV__nc|ENSG00000108582|O75976-2|CPD	MSMS	A375_MHC_IP_R2	2	381.5955810546875	2	381.727052	761.439552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.06	1	114.77	114.27	115.27	0.70985								0	0	0	0.16876	1	43011	43011		0	0	1		+		51127	17541	37190	37490	49929	49929					0.04928960037466368
SSAKGGGG	8	Unmodified	_SSAKGGGG_					0	0	0			REV__ENST00000521871.5_1_2:73496825-73511486:-|nuORF	REV__ENST00000521871.5_1_2:73496825-73511486:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	620.1529541015625	1	620.29983	619.292553	-0.72067	-0.00044703	-1.0165	-0.00063053	-1.7372	-0.0010776	620.3000498663334	32.043	0.30196	32.78	32.504	32.806	0.73692					6	5	2	0	0	0	0.972	1	11279	11279		2.5775	0	1	814260	+		51128	25723	37191	37491	49930	49930					-0.03232136847464062
SSAKTILKY	9	Unmodified	_SSAKTILKY_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	A375_MHC_IP_R1	1	506.19744873046875	2	505.797675	1009.5808	-0.28103	-0.00014214	-0.59889	-0.00030292	-0.87992	-0.00044506	505.7972765691068	28.604	0.6074	28.604	28.188	28.795	0					23	11	3	0	0	0	0.15736	1	8879	8879		57.108	37.746	1	10354000			51129	2877	37192	37492	49931	49931					0.07638913620087351
SSAKTILKY	9	Unmodified	_SSAKTILKY_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	A375_MHC_IP_R2	2	506.197265625	2	505.797675	1009.5808	-0.73934	-0.00037396	-0.40154	-0.0002031	-1.1409	-0.00057706	505.7972900212264	27.822	0.45522	28.501	28.251	28.706	0.67857					18	7	3	0	0	0	0.75519	1	9618	9618		10.151	5.2536	1	8289200			51130	2877	37192	37492	49932	49932					0.07638913620087351
SSAPNKNQLD	10	Unmodified	_SSAPNKNQLD_					0	0	0		nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC;nc|ENSG00000134982|P25054-2|APC	nc|ENSG00000134982|P25054-3|APC	nc|ENSG00000134982|P25054-3|APC	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1337890625	2	537.264727	1072.5149	-0.66015	-0.00035468	1.6092	0.00086458	0.94907	0.0005099	537.2664404590578	53.495	0.71252	53.495	53.25	53.962	0					25	12	3	0	0	0	0.79457	1	18988	18988		20.415	16.47	1	4784800			51131	4632	37193	37493	49933	49933					-0.018455272927667465
SSAPPRTAF	9	Unmodified	_SSAPPRTAF_					0	0	0		ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1;nc|ENSG00000107938|Q3B7T1-3|EDRF1;nc|ENSG00000107938|Q3B7T1-4|EDRF1	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	467.64263916015625	2	467.243067	932.47158	-0.32576	-0.00015221	-0.10944	-5.1134E-05	-0.43519	-0.00020334	467.24300370289285	28.617	1.5186	28.617	28.037	29.555	0					105	29	5	0	0	0	0.0023519	2	8941	8941;9189		140.63	72.552	1	222830000			51132	2771	37194	37494	49934;49935	49934					0.0026432772061752985
SSAPPRTAF	9	Unmodified	_SSAPPRTAF_					0	0	0		ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1;nc|ENSG00000107938|Q3B7T1-3|EDRF1;nc|ENSG00000107938|Q3B7T1-4|EDRF1	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	467.6425476074219	2	467.243067	932.47158	-0.81085	-0.00037886	0.12233	5.7156E-05	-0.68852	-0.00032171	467.2431048132229	28.052	1.4667	28.73	28.047	29.514	0.67857					105	28	5	0	0	0	0.0023519	2	9695	9695;9965		140.63	83.162	1	227460000			51133	2771	37194	37494	49936;49937	49936					0.0026432772061752985
SSAPPVQPGP	10	Unmodified	_SSAPPVQPGP_					0	0	0			REV__nc|ENSG00000146067|Q96PV7|FAM193B	REV__nc|ENSG00000146067|Q96PV7|FAM193B	MULTI-MSMS	A375_MHC_IP_R1	1	468.6508483886719	2	468.742899	935.471246	-0.4795	-0.00022476	0.19066	8.9369E-05	-0.28884	-0.00013539	468.7430245614638	37.917	0.40889	37.917	37.658	38.067	0					14	7	3	0	0	0	0.51963	1	12878	12878		26.884	8.7487	1	3242700			51134	19514	37195	37495	49938	49938					0.0009290800077224048
SSAPTARVF	9	Unmodified	_SSAPTARVF_					0	0	0		ENSG00000101161|ENST00000266079|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	MULTI-SECPEP	A375_MHC_IP_R2	2	468.6504211425781	2	468.250892	934.48723	-1.0677	-0.00049993	0.43279	0.00020266	-0.63486	-0.00029727	468.2510820821463	37.339	1.1766	38.11	37.816	38.993	0.7709					60	22	4	0	0	0	0.011357	1	13608	13608		125.53	53.607	1	153380000			51135	2259	37196	37496	49939	49939					0.0173661423766589
SSAPTARVF	9	Unmodified	_SSAPTARVF_					0	0	0		ENSG00000101161|ENST00000266079|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	468.250892	934.48723	-0.67008	-0.00031377	0.386	0.00018074	-0.28408	-0.00013302	468.251058384636	38.193	1.1206	38.193	37.862	38.983	0	0.041575	-1.3972E-05	NaN	125.53	59	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166500000			51136	2259	37196	37496							0.0173661423766589
SSASMQEQLW	10	Unmodified	_SSASMQEQLW_					0	0	0			REV__ENSG00000237412|ENST00000617714|PRSS56	REV__ENSG00000237412|ENST00000617714|PRSS56	MULTI-SECPEP	A375_MHC_IP_R1	1	584.1607055664062	2	583.760963	1165.50737	0.28581	0.00016684	-0.55647	-0.00032485	-0.27067	-0.00015801	583.7606135523228	69.453	0.50935	69.453	69.121	69.631	0					21	9	3	0	0	0	0.83355	1	25186	25186		17.113	17.113	1	4957100	+		51137	22764	37197	37497	49940	49940					-0.068760028846782
SSATDAAIRVW	11	Unmodified	_SSATDAAIRVW_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-SECPEP	A375_MHC_IP_R1	1	589.2042846679688	2	588.80402	1175.59349	-0.24127	-0.00014206	0.30216	0.00017791	0.060884	3.5849E-05	588.8042112754897	68.743	0.50513	68.743	68.514	69.02	0					19	9	3	0	0	0	0.00078945	1	24943	24943		143.21	101.26	1	4671200			51138	8524	37198	37498	49941	49941					0.012713250123169928
SSATDAAIRVW	11	Unmodified	_SSATDAAIRVW_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-SECPEP	A375_MHC_IP_R2	2	589.2036743164062	2	588.80402	1175.59349	-0.46773	-0.0002754	-0.76237	-0.00044889	-1.2301	-0.00072429	588.8039646611305	68.131	0.56041	68.866	68.56	69.121	0.73512					22	10	3	0	0	0	0.00078945	1	25787	25787		143.21	101.26	1	2565000			51139	8524	37198	37498	49942	49942					0.012713250123169928
SSATFIRY	8	Unmodified	_SSATFIRY_					0	0	0		ENSG00000188771|ENST00000338832|PLET1	ENSG00000188771|ENST00000338832|PLET1	ENSG00000188771|ENST00000338832|PLET1	MULTI-SECPEP	A375_MHC_IP_R1	1	473.1451110839844	2	472.745442	943.476331	-0.36713	-0.00017356	0.22138	0.00010465	-0.14576	-6.8907E-05	472.74545320117784	55.833	0.50796	55.833	55.635	56.143	0					12	9	2	0	0	0	0.84294	1	20002	20002		37.974	1.9298	1	2776600			51140	8933	37199	37499	49943	49943					0.002332118633717073
SSATFIRY	8	Unmodified	_SSATFIRY_					0	0	0		ENSG00000188771|ENST00000338832|PLET1	ENSG00000188771|ENST00000338832|PLET1	ENSG00000188771|ENST00000338832|PLET1	MULTI-MATCH	A375_MHC_IP_R2	2		2	472.745442	943.476331	-0.71146	-0.00033634	0.47971	0.00022678	-0.23175	-0.00010956	472.74553554471055	55.028	0.51101	55.779	55.473	55.984	0.75075	-0.026823	0.0001369	NaN	37.974	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2160000			51141	8933	37199	37499							0.002332118633717073
SSATLRPTW	9	Unmodified	_SSATLRPTW_					0	0	0			REV__ENST00000521746.5_1_8:38758951-38793551:+|nuORF	REV__ENST00000521746.5_1_8:38758951-38793551:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	510.1698303222656	2	509.769448	1017.52434	-0.59226	-0.00030192	0.95445	0.00048655	0.36219	0.00018463	509.76992482505915	46.859	0.86786	46.859	46.395	47.263	0					24	12	3	0	0	0	0.11629	1	16456	16456		47.749	14.963	1	4191200	+		51142	25720	37200	37500	49944	49944					0.01628285783431238
SSATLRPTW	9	Unmodified	_SSATLRPTW_					0	0	0			REV__ENST00000521746.5_1_8:38758951-38793551:+|nuORF	REV__ENST00000521746.5_1_8:38758951-38793551:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	510.1695251464844	2	509.769448	1017.52434	-0.69823	-0.00035594	1.3252	0.00067554	0.62696	0.0003196	509.77047141006375	45.989	0.90621	46.754	46.201	47.108	0.76519					24	17	2	0	0	0	0.11629	1	17231	17231		47.749	2.0491	1	4694000	+		51143	25720	37200	37500	49945	49945					0.01628285783431238
SSATLRPTW	9	Unmodified	_SSATLRPTW_					0	0	0			REV__ENST00000521746.5_1_8:38758951-38793551:+|nuORF	REV__ENST00000521746.5_1_8:38758951-38793551:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	509.769448	1017.52434	-0.59226	-0.00030192	0.95445	0.00048655	0.36219	0.00018463	509.76992482505915	46.859	0.86786	46.859	46.395	47.263	0	0.052339	-3.468E-05	NaN	47.749	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4191200	+		51144	25720	37200	37500							0.01628285783431238
SSATLRPTW	9	Unmodified	_SSATLRPTW_					0	0	0			REV__ENST00000521746.5_1_8:38758951-38793551:+|nuORF	REV__ENST00000521746.5_1_8:38758951-38793551:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	509.769448	1017.52434	-0.69823	-0.00035594	1.3252	0.00067554	0.62696	0.0003196	509.77047141006375	45.989	0.90621	46.754	46.201	47.108	0.76519	-0.052339	0.0003433	NaN	47.749	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4694000	+		51145	25720	37200	37500							0.01628285783431238
SSCCCCCCSSR	11	Unmodified	_SSCCCCCCSSR_					0	0	0		ENSG00000080709|ENST00000673685|KCNN2	ENSG00000080709|ENST00000673685|KCNN2	ENSG00000080709|ENST00000673685|KCNN2	MSMS	A375_MHC_IP_R1	1	571.1703491210938	2	571.154725	1140.2949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.762	1	73.762	73.262	74.262	0								0	0	0	0.1636	1	26865	26865		0	0	1				51146	1720	37201	37501	49946	49946					-0.2696394314616555
SSCCCCCCSSR	11	Unmodified	_SSCCCCCCSSR_					0	0	0		ENSG00000080709|ENST00000673685|KCNN2	ENSG00000080709|ENST00000673685|KCNN2	ENSG00000080709|ENST00000673685|KCNN2	MSMS	A375_MHC_IP_R2	2	571.163818359375	2	571.154725	1140.2949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.424	1	56.175	55.675	56.675	0.75075								0	0	0	0.16354	1	20937	20937		0.30703	0.30703	1				51147	1720	37201	37501	49947	49947					-0.2696394314616555
SSCCCCCCSSR	11	Unmodified	_SSCCCCCCSSR_					0	0	0		ENSG00000080709|ENST00000673685|KCNN2	ENSG00000080709|ENST00000673685|KCNN2	ENSG00000080709|ENST00000673685|KCNN2	MSMS	A375_MHC_IP_R2	2	571.1702880859375	2	571.154725	1140.2949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.338	1	61.083	60.583	61.583	0.74503								0	0	0	0.1636	1	22843	22843		0	0	1				51148	1720	37201	37501	49948	49948					-0.2696394314616555
SSCCCCCCSSR	11	Unmodified	_SSCCCCCCSSR_					0	0	0		ENSG00000080709|ENST00000673685|KCNN2	ENSG00000080709|ENST00000673685|KCNN2	ENSG00000080709|ENST00000673685|KCNN2	MSMS	A375_MHC_IP_R2	2	571.17041015625	2	571.154725	1140.2949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.917	1	73.653	73.153	74.153	0.73541								0	0	0	0.1636	1	27679	27679		0	0	1				51149	1720	37201	37501	49949	49949					-0.2696394314616555
SSCCNPCC	8	Unmodified	_SSCCNPCC_					0	0	0		ENSG00000244411|ENST00000398536|KRTAP5-7;ENSG00000204572|ENST00000398531|KRTAP5-10;ENSG00000241598|ENST00000399682|KRTAP5-4;nc|ENSG00000241598|Q6L8H1|KRTAP5-4	ENSG00000244411|ENST00000398536|KRTAP5-7	ENSG00000244411|ENST00000398536|KRTAP5-7	MULTI-SECPEP	A375_MHC_IP_R2	2	816.6146850585938	1	816.214327	815.207051	-0.65069	-0.0005311	-2.2401	-0.0018284	-2.8907	-0.0023595	816.2147026562864	145.19	0.39903	145.21	145.12	145.52	0.021423					53	31	2	0	0	0	0.972	1	56664	56664		0	0	1	115650			51150	9457	37202	37502	49950	49950					-0.20794452682969222
SSCCNPCC	8	Unmodified	_SSCCNPCC_					0	0	0		ENSG00000244411|ENST00000398536|KRTAP5-7;ENSG00000204572|ENST00000398531|KRTAP5-10;ENSG00000241598|ENST00000399682|KRTAP5-4;nc|ENSG00000241598|Q6L8H1|KRTAP5-4	ENSG00000244411|ENST00000398536|KRTAP5-7	ENSG00000244411|ENST00000398536|KRTAP5-7	MULTI-MATCH	A375_MHC_IP_R1	1		1	816.214327	815.207051	-0.74429	-0.0006075	-2.508	-0.0020471	-3.2523	-0.0026546	816.2148248884572	145.52	0.56241	145.52	145.36	145.92	0	0.156	-5.7635E-05	NaN	0	121	66	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100500			51151	9457	37202	37502							-0.20794452682969222
SSCDPDCC	8	Unmodified	_SSCDPDCC_					0	0	0			REV__nc|ENSG00000204852|Q2MV58-5|TCTN1	REV__nc|ENSG00000204852|Q2MV58-5|TCTN1	MSMS	A375_MHC_IP_R2	2	415.2152099609375	2	415.111689	828.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.244	1	18.847	18.347	19.347	0.60308								0	0	0	0.16876	1	5417	5417		0	0	1		+		51152	22545	37203	37503	49951	49951					-0.21215120393367215
SSCDSTMKIY	10	Unmodified	_SSCDSTMKIY_					0	0	0			REV__GCNT1|p.N95K|1|0.29|ENSG00000187210|chr9:76502666-76502666|C/G|missense_variant	REV__GCNT1|p.N95K|1|0.29|ENSG00000187210|chr9:76502666-76502666|C/G|missense_variant	MSMS	A375_MHC_IP_R1	1	567.682861328125	2	567.743924	1133.4733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.964	1	41.964	41.464	42.464	0								0	0	0	0.14925	1	14517	14517		19.257	1.122	1		+		51153	26675	37204	37504	49952	49952					-0.08810167367937538
SSCGSNSD	8	Unmodified	_SSCGSNSD_					0	0	0		nc|ENSG00000096717|Q96EB6-2|SIRT1;ENSG00000096717|ENST00000212015|SIRT1	nc|ENSG00000096717|Q96EB6-2|SIRT1	nc|ENSG00000096717|Q96EB6-2|SIRT1	MULTI-SECPEP	A375_MHC_IP_R2	2	755.646728515625	1	756.246473	755.239197	-1.1533	-0.00087216	-0.23269	-0.00017597	-1.386	-0.0010481	756.2483071598663	15.756	2.5179	16.343	14.384	16.901	0.58774					622	369	2	0	0	0	0.972	1	4483	4483		0.69038	0	1	708550			51154	2061	37205	37505	49953	49953					-0.14821302412303794
SSCPWWPMT	9	Unmodified	_SSCPWWPMT_					0	0	0			REV__ENST00000541864.6_1_16:67981596-67981647:-|nuORF	REV__ENST00000541864.6_1_16:67981596-67981647:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	548.1354370117188	2	547.725338	1093.43612	-0.5795	-0.00031741	-0.55388	-0.00030338	-1.1334	-0.00062078	547.7250244932079	53.326	0.60819	53.326	53.048	53.656	0					19	11	2	0	0	0	0.60101	1	19016	19016		14.838	0.25658	1	2224300	+		51155	25961	37206	37506	49954	49954					-0.10685794123060077
SSDANPVRY	9	Unmodified	_SSDANPVRY_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	A375_MHC_IP_R2	2	506.1480712890625	2	504.740888	1007.46722	-1.1451	-0.00057797	4.3877	0.0022146	3.2426	0.0016367	504.7409274525164	25.409	0.50848	26.053	25.873	26.382	0.64368					30	9	5	0	0	0	0.27715	1	8482	8482		32.305	3.8186	1	13257000			51156	3055	37207	37507	49955	49955					-0.03621181492951564
SSDCCTGCD	9	Unmodified	_SSDCCTGCD_					0	0	0			REV__ENST00000319170.9_1_2:204305150-204305717:-|nuORF	REV__ENST00000319170.9_1_2:204305150-204305717:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	890.8358764648438	1	890.23248	889.225203	-0.41585	-0.00037021	-1.4021	-0.0012482	-1.818	-0.0016184	890.2332831972103	86.105	2.5399	86.105	83.887	86.426	0					83	49	2	0	0	0	0.77827	1	30893	30893		0	0	1	1856900	+		51157	23557	37208	37508	49956	49956					-0.2238403922725638
SSDCCTGCD	9	Unmodified	_SSDCCTGCD_					0	0	0			REV__ENST00000319170.9_1_2:204305150-204305717:-|nuORF	REV__ENST00000319170.9_1_2:204305150-204305717:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	890.7235717773438	1	890.23248	889.225203	-0.37867	-0.00033711	-1.188	-0.0010576	-1.5667	-0.0013947	890.2332142763437	25.82	4.35	25.82	25.053	29.403	0					123	85	2	0	0	0	0.81896	1	9134	9134		0	0	1	2233500	+		51158	23557	37208	37508	49957	49957					-0.2238403922725638
SSDCCTGCD	9	Unmodified	_SSDCCTGCD_					0	0	0			REV__ENST00000319170.9_1_2:204305150-204305717:-|nuORF	REV__ENST00000319170.9_1_2:204305150-204305717:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	891.178466796875	1	890.23248	889.225203	-0.29124	-0.00025927	-1.2666	-0.0011276	-1.5579	-0.0013869	890.2334684591075	136.9	3.0048	137.01	136.2	139.2	0.11133					81	58	2	0	0	0	0.77827	2	53651	53651;54302		0	0	1	1341900	+		51159	23557	37208	37508	49958;49959	49958					-0.2238403922725638
SSDCCTGCD	9	Unmodified	_SSDCCTGCD_					0	0	0			REV__ENST00000319170.9_1_2:204305150-204305717:-|nuORF	REV__ENST00000319170.9_1_2:204305150-204305717:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	890.985107421875	1	890.23248	889.225203	-0.42362	-0.00037712	-1.2402	-0.001104	-1.6638	-0.0014811	890.2332493225534	83.875	1.7805	84.614	83.595	85.375	0.73962					51	34	2	0	0	0	0.81896	1	31869	31869		0	0	1	1673800	+		51160	23557	37208	37508	49960	49960					-0.2238403922725638
SSDCCTGCD	9	Unmodified	_SSDCCTGCD_					0	0	0			REV__ENST00000319170.9_1_2:204305150-204305717:-|nuORF	REV__ENST00000319170.9_1_2:204305150-204305717:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	889.7738037109375	1	890.23248	889.225203	-0.29124	-0.00025927	-1.2666	-0.0011276	-1.5579	-0.0013869	890.2334684591075	136.9	3.0048	137.01	136.2	139.2	0.11133					81	58	2	0	0	0	0.81896	1	54290	54290		0	0	1	1341900	+		51161	23557	37208	37508	49961	49961					-0.2238403922725638
SSDCCTGCD	9	Unmodified	_SSDCCTGCD_					0	0	0			REV__ENST00000319170.9_1_2:204305150-204305717:-|nuORF	REV__ENST00000319170.9_1_2:204305150-204305717:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	890.23248	889.225203	-0.41585	-0.00037021	-1.4021	-0.0012482	-1.818	-0.0016184	890.2332831972103	86.105	2.5399	86.105	83.887	86.426	0	0	0	NaN	0	83	49	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1856900	+		51162	23557	37208	37508							-0.2238403922725638
SSDCCTGCD	9	Unmodified	_SSDCCTGCD_					0	0	0			REV__ENST00000319170.9_1_2:204305150-204305717:-|nuORF	REV__ENST00000319170.9_1_2:204305150-204305717:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	890.23248	889.225203	-0.91432	-0.00081396	-1.0919	-0.00097208	-2.0063	-0.001786	890.2332608447114	25.451	0.96745	26.094	25.414	26.382	0.64368	0.13725	6.7976E-05	NaN	0	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1475900	+		51163	23557	37208	37508							-0.2238403922725638
SSDDAGFC	8	Unmodified	_SSDDAGFC_					0	0	0			REV__ENST00000472318.1_1_21:33064202-33064280:-|nuORF	REV__ENST00000472318.1_1_21:33064202-33064280:-|nuORF	MSMS	A375_MHC_IP_R2	2	401.1994934082031	2	401.139618	800.264683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.266	1	18.869	18.369	19.369	0.60308								0	0	0	0.16876	1	5423	5423		0.79363	0	1		+		51164	25136	37209	37509	49962	49962					-0.14343827889877048
SSDDATAAYLL	11	Unmodified	_SSDDATAAYLL_					0	0	0			REV__IRS1|p.E1052Rfs*29|1|0.11|ENSG00000169047|chr2:226795585-226795586|-/T|frameshift_variant	REV__IRS1|p.E1052Rfs*29|1|0.11|ENSG00000169047|chr2:226795585-226795586|-/T|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	564.1798706054688	2	563.766768	1125.51898	-0.29994	-0.0001691	0.38571	0.00021745	0.085775	4.8357E-05	563.7669708097166	40.589	0.50782	40.589	40.355	40.863	0					24	9	3	0	0	0	0.43635	1	13977	13977		36.127	7.0454	1	9069300	+		51165	20901	37210	37510	49963	49963					-0.03875482589728563
SSDDATAAYLL	11	Unmodified	_SSDDATAAYLL_					0	0	0			REV__IRS1|p.E1052Rfs*29|1|0.11|ENSG00000169047|chr2:226795585-226795586|-/T|frameshift_variant	REV__IRS1|p.E1052Rfs*29|1|0.11|ENSG00000169047|chr2:226795585-226795586|-/T|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	564.1797485351562	2	563.766768	1125.51898	-0.55488	-0.00031282	0.091152	5.1388E-05	-0.46373	-0.00026144	563.766797104938	39.845	0.50771	40.62	40.422	40.93	0.77451					24	9	3	0	0	0	0.25866	1	14745	14745		49.933	8.0934	1	7595200	+		51166	20901	37210	37510	49964	49964					-0.03875482589728563
SSDDATAAYLL	11	Unmodified	_SSDDATAAYLL_					0	0	0			REV__IRS1|p.E1052Rfs*29|1|0.11|ENSG00000169047|chr2:226795585-226795586|-/T|frameshift_variant	REV__IRS1|p.E1052Rfs*29|1|0.11|ENSG00000169047|chr2:226795585-226795586|-/T|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	563.766768	1125.51898	-0.29994	-0.0001691	0.38571	0.00021745	0.085775	4.8357E-05	563.7669708097166	40.589	0.50782	40.589	40.355	40.863	0	-0.01561	0.00015359	NaN	49.933	24	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9069300	+		51167	20901	37210	37510							-0.03875482589728563
SSDDATAAYLL	11	Unmodified	_SSDDATAAYLL_					0	0	0			REV__IRS1|p.E1052Rfs*29|1|0.11|ENSG00000169047|chr2:226795585-226795586|-/T|frameshift_variant	REV__IRS1|p.E1052Rfs*29|1|0.11|ENSG00000169047|chr2:226795585-226795586|-/T|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	563.766768	1125.51898	-0.55488	-0.00031282	0.091152	5.1388E-05	-0.46373	-0.00026144	563.766797104938	39.845	0.50771	40.62	40.422	40.93	0.77451	0.01561	-0.00017854	NaN	49.933	24	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7595200	+		51168	20901	37210	37510							-0.03875482589728563
SSDDDDDDDDD	11	Unmodified	_SSDDDDDDDDD_					0	0	0		nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	MSMS	A375_MHC_IP_R2	2	614.45556640625	2	614.665831	1227.31711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.618	1	100.38	99.881	100.88	0.76278								0	0	0	0.1636	1	37786	37786		0	0	1				51169	14849	37211	37511	49965	49965					-0.28745707594544
SSDDLEQFA	9	Unmodified	_SSDDLEQFA_					0	0	0		ENSG00000185668|ENST00000373012|POU3F1	ENSG00000185668|ENST00000373012|POU3F1	ENSG00000185668|ENST00000373012|POU3F1	MULTI-SECPEP	A375_MHC_IP_R1	1	506.95074462890625	2	506.216911	1010.41927	-0.51125	-0.0002588	-4.3206	-0.0021872	-4.8319	-0.002446	506.21516871792556	24.473	0.15034	24.473	24.397	24.547	0					4	2	2	0	0	0	0.69504	1	6932	6932		12.532	0	1	1613300			51170	8682	37212	37512	49966	49966					-0.08552300203666618
SSDDQQSTPN	10	Unmodified	_SSDDQQSTPN_					0	0	0			REV__nc|ENSG00000248905|Q68DA7-5|FMN1	REV__nc|ENSG00000248905|Q68DA7-5|FMN1	MULTI-MSMS	A375_MHC_IP_R1	1	540.1168212890625	2	539.717807	1077.42106	-0.71887	-0.00038799	-0.93763	-0.00050606	-1.6565	-0.00089404	539.7171029983876	53.257	0.60862	53.257	52.997	53.605	0					27	11	3	0	0	0	0.2347	1	18979	18979		45.7	15.475	1	4380200	+		51171	27527	37213	37513	49967	49967					-0.1145529118568902
SSDDQQSTPN	10	Unmodified	_SSDDQQSTPN_					0	0	0			REV__nc|ENSG00000248905|Q68DA7-5|FMN1	REV__nc|ENSG00000248905|Q68DA7-5|FMN1	MULTI-SECPEP	A375_MHC_IP_R1	1	539.226318359375	2	539.717807	1077.42106	-0.71887	-0.00038799	-0.93763	-0.00050606	-1.6565	-0.00089404	539.7171029983876	53.257	0.60862	53.257	52.997	53.605	0					27	11	3	0	0	0	0.85226	1	18975	18975		20.454	2.3186	1	4380200	+		51172	27527	37213	37513	49968	49968					-0.1145529118568902
SSDDQQSTPN	10	Unmodified	_SSDDQQSTPN_					0	0	0			REV__nc|ENSG00000248905|Q68DA7-5|FMN1	REV__nc|ENSG00000248905|Q68DA7-5|FMN1	MULTI-MSMS	A375_MHC_IP_R2	2	539.718017578125	2	539.717807	1077.42106	-1.349	-0.00072807	-0.66269	-0.00035766	-2.0117	-0.0010857	539.7172759524425	52.758	0.71008	53.509	53.183	53.893	0.75105					25	13	3	0	0	0	0.33265	2	19899	19865;19899		38.176	9.094	1	3613300	+		51173	27527	37213	37513	49969;49970	49970					-0.1145529118568902
SSDDSKLEY	9	Unmodified	_SSDDSKLEY_					0	0	0		ENSG00000114331|ENST00000326793|ACAP2	ENSG00000114331|ENST00000326793|ACAP2	ENSG00000114331|ENST00000326793|ACAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	522.629638671875	2	522.230019	1042.44548	-0.46471	-0.00024268	-0.20858	-0.00010893	-0.67329	-0.00035161	522.2298537660687	28.451	0.55715	28.451	28.238	28.795	0					25	10	4	0	0	0	0.0055952	1	8765	8765		176.43	80.316	1	25456000			51174	3211	37214	37514	49971	49971					-0.07404031032183411
SSDFDELSGW	10	Unmodified	_SSDFDELSGW_					0	0	0		nc|ENSG00000163554|P02549-2|SPTA1;ENSG00000163554|ENST00000643759|SPTA1	nc|ENSG00000163554|P02549-2|SPTA1	nc|ENSG00000163554|P02549-2|SPTA1	MULTI-MSMS	A375_MHC_IP_R2	2	572.1348266601562	2	571.735468	1141.45638	-0.65711	-0.00037569	-0.81572	-0.00046638	-1.4728	-0.00084207	571.7349560540019	33.418	0.65857	34.171	33.891	34.55	0.75225					35	12	4	0	0	0	0.62155	1	11943	11943		19.257	19.257	1	10571000			51175	6683	37215	37515	49972	49972					-0.10868628657885893
SSDFDELSGW	10	Unmodified	_SSDFDELSGW_					0	0	0		nc|ENSG00000163554|P02549-2|SPTA1;ENSG00000163554|ENST00000643759|SPTA1	nc|ENSG00000163554|P02549-2|SPTA1	nc|ENSG00000163554|P02549-2|SPTA1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	571.735468	1141.45638	-0.27649	-0.00015808	-0.85574	-0.00048926	-1.1322	-0.00064734	571.7349267246398	34.084	0.65862	34.084	33.798	34.456	0	-0.043416	-2.1737E-05	NaN	19.257	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11502000			51176	6683	37215	37515							-0.10868628657885893
SSDFDELSGW	10	Unmodified	_SSDFDELSGW_					0	0	0		nc|ENSG00000163554|P02549-2|SPTA1;ENSG00000163554|ENST00000643759|SPTA1	nc|ENSG00000163554|P02549-2|SPTA1	nc|ENSG00000163554|P02549-2|SPTA1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	571.735468	1141.45638	-0.65711	-0.00037569	-0.81572	-0.00046638	-1.4728	-0.00084207	571.7349560540019	33.418	0.65857	34.171	33.891	34.55	0.75225	0.043416	2.4023E-05	NaN	19.257	35	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10571000			51177	6683	37215	37515							-0.10868628657885893
SSDFFWKGC	9	Unmodified	_SSDFFWKGC_					0	0	0			REV__nc|ENSG00000058056|Q92995-2|USP13	REV__nc|ENSG00000058056|Q92995-2|USP13	MULTI-MSMS	A375_MHC_IP_R1	1	539.226318359375	2	538.728935	1075.44332	-0.73114	-0.00039389	0.24301	0.00013091	-0.48814	-0.00026297	538.7290400443976	53.312	0.76041	53.312	52.946	53.707	0					44	14	4	0	0	0	0.2002	1	18975	18975		37.974	37.974	1	27787000	+		51178	16429	37216	37516	49973	49973					-0.0913873825097653
SSDFFWKGC	9	Unmodified	_SSDFFWKGC_					0	0	0			REV__nc|ENSG00000058056|Q92995-2|USP13	REV__nc|ENSG00000058056|Q92995-2|USP13	MULTI-SECPEP	A375_MHC_IP_R1	1	539.1284790039062	2	538.728935	1075.44332	-0.73114	-0.00039389	0.24301	0.00013091	-0.48814	-0.00026297	538.7290400443976	53.312	0.76041	53.312	52.946	53.707	0					44	14	4	0	0	0	0.4261	1	18934	18934		37.974	37.974	1	27787000	+		51179	16429	37216	37516	49974	49974					-0.0913873825097653
SSDFFWKGC	9	Unmodified	_SSDFFWKGC_					0	0	0			REV__nc|ENSG00000058056|Q92995-2|USP13	REV__nc|ENSG00000058056|Q92995-2|USP13	MULTI-MSMS	A375_MHC_IP_R2	2	539.12841796875	2	538.728935	1075.44332	-1.3531	-0.00072897	0.53302	0.00028715	-0.8201	-0.00044181	538.7291643012408	52.757	0.81067	53.508	53.133	53.944	0.75105					43	15	4	0	0	0	0.2002	1	19836	19836		37.974	37.974	1	24953000	+		51180	16429	37216	37516	49975	49975					-0.0913873825097653
SSDFFWKGC	9	Unmodified	_SSDFFWKGC_					0	0	0			REV__nc|ENSG00000058056|Q92995-2|USP13	REV__nc|ENSG00000058056|Q92995-2|USP13	MULTI-SECPEP	A375_MHC_IP_R2	2	538.2019653320312	2	538.728935	1075.44332	-1.3531	-0.00072897	0.53302	0.00028715	-0.8201	-0.00044181	538.7291643012408	52.757	0.81067	53.508	53.133	53.944	0.75105					43	15	4	0	0	0	0.74412	1	19775	19775		14.838	3.198	1	24953000	+		51181	16429	37216	37516	49976	49976					-0.0913873825097653
SSDFPSRY	8	Unmodified	_SSDFPSRY_					0	0	0		nc|ENSG00000118200|Q08AD1-2|CAMSAP2	nc|ENSG00000118200|Q08AD1-2|CAMSAP2	nc|ENSG00000118200|Q08AD1-2|CAMSAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	480.47198486328125	2	479.716882	957.41921	-0.42081	-0.00020187	0.37269	0.00017878	-0.048121	-2.3084E-05	479.71691959672245	33.485	0.50792	33.485	33.19	33.698	0					13	9	2	0	0	0	0.92091	1	10953	10953		10.8	4.5937	1	1279400			51182	14563	37217	37517	49977	49977					-0.061202554129977216
SSDFPSRY	8	Unmodified	_SSDFPSRY_					0	0	0		nc|ENSG00000118200|Q08AD1-2|CAMSAP2	nc|ENSG00000118200|Q08AD1-2|CAMSAP2	nc|ENSG00000118200|Q08AD1-2|CAMSAP2	MULTI-SECPEP	A375_MHC_IP_R2	2	479.6043701171875	2	479.716882	957.41921	-0.61818	-0.00029655	-0.049708	-2.3846E-05	-0.66789	-0.0003204	479.71677460628126	32.77	0.40582	33.507	33.265	33.671	0.73692					12	7	2	0	0	0	0.96184	1	11608	11608		18.146	1.2041	1	1851200			51183	14563	37217	37517	49978	49978					-0.061202554129977216
SSDGTIRLW	9	Unmodified	_SSDGTIRLW_					0	0	0		ENSG00000114742|ENST00000302313|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;nc|ENSG00000114742|Q8TAF3-5|WDR48	ENSG00000114742|ENST00000302313|WDR48	ENSG00000114742|ENST00000302313|WDR48	MULTI-SECPEP	A375_MHC_IP_R2	2	518.16650390625	2	517.766906	1033.51926	-0.71324	-0.00036929	-0.18516	-9.5871E-05	-0.8984	-0.00046516	517.766917206109	76.147	1.0655	76.887	76.487	77.553	0.74052					40	20	3	0	0	0	0.010955	1	28849	28849		145.13	82.557	1	11324000			51184	3241	37218	37518	49979	49979					0.0038398192079966975
SSDGTVKIW	9	Unmodified	_SSDGTVKIW_					0	0	0		ENSG00000122692|ENST00000397149|SMU1;nc|ENSG00000122692|Q2TAY7-2|SMU1;ENST00000379752.5_1_1:157029186-157029948:-|nuORF	ENSG00000122692|ENST00000397149|SMU1	ENSG00000122692|ENST00000397149|SMU1	MULTI-SECPEP	A375_MHC_IP_R1	1	497.15576171875	2	496.756007	991.497461	-0.32366	-0.00016078	-0.19635	-9.7538E-05	-0.52001	-0.00025832	496.7558608548945	56.998	0.40786	56.998	56.855	57.263	0					13	7	2	0	0	0	0.056023	1	20494	20494		85.642	47.668	1	1545800			51185	3800	37219	37519	49980	49980					0.001371771722460835
SSDGTVKIW	9	Unmodified	_SSDGTVKIW_					0	0	0		ENSG00000122692|ENST00000397149|SMU1;nc|ENSG00000122692|Q2TAY7-2|SMU1;ENST00000379752.5_1_1:157029186-157029948:-|nuORF	ENSG00000122692|ENST00000397149|SMU1	ENSG00000122692|ENST00000397149|SMU1	MULTI-MSMS	A375_MHC_IP_R2	2	497.15533447265625	2	496.756007	991.497461	-0.75021	-0.00037267	0.2641	0.0001312	-0.48611	-0.00024148	496.7560462583317	56.261	0.51022	57.011	56.693	57.203	0.75015					15	9	2	0	0	0	0.0098085	1	21259	21259		114.2	59.428	1	2519100			51186	3800	37219	37519	49981	49981					0.001371771722460835
SSDIAKTF	8	Unmodified	_SSDIAKTF_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3;PLS3|p.K85N|1|0.53|ENSG00000102024|chrX:115629215-115629215|A/C|missense_variant	nc|ENSG00000102024|P13797-3|PLS3	nc|ENSG00000102024|P13797-3|PLS3	MULTI-SECPEP	A375_MHC_IP_R1	1	435.12432861328125	2	434.724175	867.433798	-0.089518	-3.8916E-05	-0.045259	-1.9675E-05	-0.13478	-5.8591E-05	434.72416707869394	35.981	0.50858	35.981	35.727	36.236	0					15	9	2	0	0	0	0.33704	1	12016	12016		41.956	3.9816	1	2132000			51187	2350	37220	37520	49982	49982					-0.005221832648430791
SSDIAKTF	8	Unmodified	_SSDIAKTF_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3;PLS3|p.K85N|1|0.53|ENSG00000102024|chrX:115629215-115629215|A/C|missense_variant	nc|ENSG00000102024|P13797-3|PLS3	nc|ENSG00000102024|P13797-3|PLS3	MULTI-SECPEP	A375_MHC_IP_R2	2	435.1239318847656	2	434.724175	867.433798	-0.49658	-0.00021588	-0.29113	-0.00012656	-0.78771	-0.00034244	434.7241882600831	35.178	0.45532	35.941	35.727	36.183	0.76338					12	8	2	0	0	0	0.5161	1	12756	12756		45.7	0	1	2226800			51188	2350	37220	37520	49983	49983					-0.005221832648430791
SSDKFKETSE	10	Unmodified	_SSDKFKETSE_					0	0	0		ENST00000493669.2_1_1:28733953-28817463:+|nuORF;nc|ENSG00000204138|Q8IZ21-3|PHACTR4;ENSG00000204138|ENST00000373839|PHACTR4;nc|ENSG00000204138|Q8IZ21-2|PHACTR4;ENST00000463428.5_1_1:28696332-28793284:+|nuORF	ENST00000493669.2_1_1:28733953-28817463:+|nuORF	ENST00000493669.2_1_1:28733953-28817463:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	579.6696166992188	2	579.269675	1156.5248	-0.44169	-0.00025586	0.23712	0.00013736	-0.20457	-0.0001185	579.2696102392658	32.597	0.45328	32.597	32.383	32.836	0					16	8	3	0	0	0	0.42311	1	10562	10562		32.786	2.9451	1	4808000			51189	9409	37221	37521	49984	49984					-0.047203840780412065
SSDKFKETSE	10	Unmodified	_SSDKFKETSE_					0	0	0		ENST00000493669.2_1_1:28733953-28817463:+|nuORF;nc|ENSG00000204138|Q8IZ21-3|PHACTR4;ENSG00000204138|ENST00000373839|PHACTR4;nc|ENSG00000204138|Q8IZ21-2|PHACTR4;ENST00000463428.5_1_1:28696332-28793284:+|nuORF	ENST00000493669.2_1_1:28733953-28817463:+|nuORF	ENST00000493669.2_1_1:28733953-28817463:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	579.66943359375	2	579.269675	1156.5248	-0.2611	-0.00015124	0.070242	4.0689E-05	-0.19085	-0.00011056	579.2696767084502	31.969	0.45601	32.706	32.453	32.909	0.73691					16	8	3	0	0	0	0.74754	1	11342	11342		29.082	2.8134	1	4439400			51190	9409	37221	37521	49985	49985					-0.047203840780412065
SSDKFKETSE	10	Unmodified	_SSDKFKETSE_					0	0	0		ENST00000493669.2_1_1:28733953-28817463:+|nuORF;nc|ENSG00000204138|Q8IZ21-3|PHACTR4;ENSG00000204138|ENST00000373839|PHACTR4;nc|ENSG00000204138|Q8IZ21-2|PHACTR4;ENST00000463428.5_1_1:28696332-28793284:+|nuORF	ENST00000493669.2_1_1:28733953-28817463:+|nuORF	ENST00000493669.2_1_1:28733953-28817463:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	579.269675	1156.5248	-0.44169	-0.00025586	0.23712	0.00013736	-0.20457	-0.0001185	579.2696102392658	32.597	0.45328	32.597	32.383	32.836	0	-0.054408	0.00010668	NaN	32.786	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4808000			51191	9409	37221	37521							-0.047203840780412065
SSDKGRLCYY	10	Unmodified	_SSDKGRLCYY_					0	0	0		nc|ENSG00000119392|Q53GS7-2|GLE1;ENSG00000119392|ENST00000309971|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	MULTI-MSMS	A375_MHC_IP_R1	1	398.2535400390625	3	397.853612	1190.53901	-0.58851	-0.00023414	0.14151	5.63E-05	-0.447	-0.00017784	397.8536411462331	29.519	0.34988	29.519	29.353	29.703	0					11	6	3	0	0	0	0.080535	2	9255	9255;9328		59.013	46.157	1	22471000			51192	3587	37222	37522	49986;49987	49986					-0.04864010130745555
SSDKGRLCYY	10	Unmodified	_SSDKGRLCYY_					0	0	0		nc|ENSG00000119392|Q53GS7-2|GLE1;ENSG00000119392|ENST00000309971|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	MULTI-SECPEP	A375_MHC_IP_R1	1	596.6766357421875	2	596.27678	1190.53901	-0.84116	-0.00050157	-0.0093832	-5.595E-06	-0.85055	-0.00050716	596.2769514750053	29.462	0.2539	29.462	29.353	29.607	0					9	4	3	0	0	0	0.70912	1	9279	9279		42.312	20.776	1	8287600			51193	3587	37222	37522	49988	49988					-0.04864010130745555
SSDKGRLCYY	10	Unmodified	_SSDKGRLCYY_					0	0	0		nc|ENSG00000119392|Q53GS7-2|GLE1;ENSG00000119392|ENST00000309971|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	MULTI-MSMS	A375_MHC_IP_R2	2	398.2535400390625	3	397.853612	1190.53901	-0.77999	-0.00031032	0.28386	0.00011294	-0.49612	-0.00019739	398.1879854523913	28.785	0.59671	29.484	29.283	29.88	0.69872					17	11	2	0	0	0	0.046805	1	9970	9970		66.683	51.144	1	15381000			51194	3587	37222	37522	49989	49989					-0.04864010130745555
SSDKGRLCYY	10	Unmodified	_SSDKGRLCYY_					0	0	0		nc|ENSG00000119392|Q53GS7-2|GLE1;ENSG00000119392|ENST00000309971|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	MULTI-MSMS	A375_MHC_IP_R2	2	596.67626953125	2	596.27678	1190.53901	-1.2427	-0.00074096	-0.083982	-5.0076E-05	-1.3266	-0.00079104	596.2768183898258	28.788	0.44706	29.487	29.333	29.78	0.69872					10	8	2	0	0	0	0.10198	1	10008	10008		63.227	42.774	1	7111800			51195	3587	37222	37522	49990	49990					-0.04864010130745555
SSDLIDISYN	10	Unmodified	_SSDLIDISYN_					0	0	0			REV__tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	REV__tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	564.6681518554688	2	563.766768	1125.51898	-0.29994	-0.0001691	0.38571	0.00021745	0.085775	4.8357E-05	563.7669708097166	40.589	0.50782	40.589	40.355	40.863	0					24	9	3	0	0	0	0.39599	1	13967	13967		34.402	0	1	9069300	+		51196	28583	37223	37523	49991	49991					-0.038754825897058254
SSDNATLTHY	10	Unmodified	_SSDNATLTHY_					0	0	0		nc|ENSG00000108021|Q5VWN6-2|TASOR2;ENSG00000108021|ENST00000695737|TASOR2	nc|ENSG00000108021|Q5VWN6-2|TASOR2	nc|ENSG00000108021|Q5VWN6-2|TASOR2	MULTI-MSMS	A375_MHC_IP_R1	1	555.148681640625	2	554.74891	1107.48327	-0.47944	-0.00026597	-0.20121	-0.00011162	-0.68066	-0.00037759	554.7487872680053	28.511	0.60658	28.511	28.288	28.895	0					36	11	4	0	0	0	9.644200000000001E-54	2	8791	8738;8791		284.64	213.51	1	64561000			51197	2779	37224	37524	49992;49993	49993					-0.06617520046711434
SSDNATLTHY	10	Unmodified	_SSDNATLTHY_					0	0	0		nc|ENSG00000108021|Q5VWN6-2|TASOR2;ENSG00000108021|ENST00000695737|TASOR2	nc|ENSG00000108021|Q5VWN6-2|TASOR2	nc|ENSG00000108021|Q5VWN6-2|TASOR2	MULTI-MSMS	A375_MHC_IP_R2	2	555.1978759765625	2	554.74891	1107.48327	-0.84404	-0.00046823	-0.045107	-2.5023E-05	-0.88915	-0.00049325	554.7488536961287	27.9	0.60838	28.579	28.351	28.96	0.67857					32	11	4	0	0	0	0.046805	1	9732	9732		76.825	53.035	1	56589000			51198	2779	37224	37524	49994	49994					-0.06617520046711434
SSDNDSDWAL	10	Unmodified	_SSDNDSDWAL_					0	0	0			REV__ENST00000584868.1_1_19:40827171-40828232:-|nuORF	REV__ENST00000584868.1_1_19:40827171-40828232:-|nuORF	MSMS	A375_MHC_IP_R2	2	555.1485595703125	2	555.222725	1108.4309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.849	1	28.528	28.028	29.028	0.67857								0	0	0	0.14601	1	9565	9565		25.399	2.663	1		+		51199	20167	37225	37525	49995	49995					-0.1189810318032869
SSDNIMVQY	9	Oxidation (M)	_SSDNIM(Oxidation (M))VQY_		SSDNIM(1)VQY		SSDNIM(110)VQY	0	0	1		ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2;ENSG00000181789|ENST00000314797|COPG1	ENSG00000158623|ENST00000425248|COPG2;ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	A375_MHC_IP_R1	1	537.2162475585938	2	536.734414	1071.45428	-0.7178	-0.00038527	0.10694	5.7397E-05	-0.61086	-0.00032787	536.7344588002479	53.423	1.066	53.423	52.997	54.063	0					45	20	3	0	0	0	0.0098183	1	18967	18967		114.65	52.076	1	21767000			51200	8361;6319	37226	37526	49996	49996		338			-0.07859380667332516
SSDNIMVQY	9	Oxidation (M)	_SSDNIM(Oxidation (M))VQY_		SSDNIM(1)VQY		SSDNIM(130)VQY	0	0	1		ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2;ENSG00000181789|ENST00000314797|COPG1	ENSG00000158623|ENST00000425248|COPG2;ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	A375_MHC_IP_R2	2	536.5647583007812	2	536.734414	1071.45428	-1.3863	-0.0007441	0.17042	9.147E-05	-1.2159	-0.00065263	536.7345158301829	52.825	0.9646	53.576	53.183	54.147	0.75105					52	18	4	0	0	0	0.0054362	3	19864	19812;19864;19927		134.3	69.061	1	21994000			51201	8361;6319	37226	37526	49997;49998;49999	49998		338			-0.07859380667332516
SSDNIMVQY	9	Oxidation (M)	_SSDNIM(Oxidation (M))VQY_		SSDNIM(1)VQY		SSDNIM(50)VQY	0	0	1		ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2;ENSG00000181789|ENST00000314797|COPG1	ENSG00000158623|ENST00000425248|COPG2;ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-SECPEP	A375_MHC_IP_R2	2	537.2030029296875	2	536.734414	1071.45428	-0.76861	-0.00041254	-0.18671	-0.00010021	-0.95532	-0.00051275	536.7342220655596	68.703	0.86133	69.438	69.121	69.982	0.73511					30	16	3	0	0	0	0.13208	1	26062	26062		49.554	32.441	1	2069800			51202	8361;6319	37226	37526	50000	50000		338			-0.07859380667332516
SSDNIMVQY	9	Unmodified	_SSDNIMVQY_					0	0	0		ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2;ENSG00000181789|ENST00000314797|COPG1	ENSG00000158623|ENST00000425248|COPG2;ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	A375_MHC_IP_R1	1	529.1535034179688	2	528.736957	1055.45936	-0.037475	-1.9815E-05	-0.43495	-0.00022997	-0.47243	-0.00024979	528.7367444426421	69.406	0.76266	69.406	69.02	69.782	0					38	14	3	0	0	0	0.004184	3	25191	25132;25191;25251		174.73	114.34	1	14743000			51203	8361;6319	37226	37527	50001;50002;50003	50002					-0.06615076804723685
SSDNIMVQY	9	Unmodified	_SSDNIMVQY_					0	0	0		ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2;ENSG00000181789|ENST00000314797|COPG1	ENSG00000158623|ENST00000425248|COPG2;ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	A375_MHC_IP_R2	2	529.1529541015625	2	528.736957	1055.45936	-0.43463	-0.00022981	-0.37945	-0.00020063	-0.81408	-0.00043044	528.7367456456603	68.728	0.75994	69.463	69.07	69.83	0.73511					41	14	4	0	0	0	0.004184	3	26067	26047;26059;26067		160.52	104.34	1	16343000			51204	8361;6319	37226	37527	50004;50005;50006	50006					-0.06615076804723685
SSDNTIRFW	9	Unmodified	_SSDNTIRFW_					0	0	0		ENSG00000075702|ENST00000401500|WDR62;nc|ENSG00000075702|O43379|WDR62;nc|ENSG00000075702|O43379-2|WDR62	ENSG00000075702|ENST00000401500|WDR62	ENSG00000075702|ENST00000401500|WDR62	MULTI-MSMS	A375_MHC_IP_R2	2	563.2208251953125	2	563.269813	1124.52507	-0.51787	-0.0002917	-0.23211	-0.00013074	-0.74998	-0.00042244	563.7705650389579	79.958	0.76125	80.703	80.453	81.214	0.74474					20	14	2	0	0	0	0.39434	1	30468	30468		24.991	14.167	1	1536400			51205	1619	37227	37528	50007	50007					-0.03220919567525016
SSDPASDAMDP	11	Unmodified	_SSDPASDAMDP_					0	0	0		ENST00000469661.1_1_3:67048755-67053962:+|nuORF;ENSG00000163376|ENST00000417314|KBTBD8	ENST00000469661.1_1_3:67048755-67053962:+|nuORF	ENST00000469661.1_1_3:67048755-67053962:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	547.11083984375	2	546.711136	1091.40772	-0.60096	-0.00032855	0.68992	0.00037719	0.088959	4.8635E-05	546.7114912521091	53.321	0.6595	53.321	52.997	53.656	0					29	12	3	0	0	0	0.41028	1	18960	18960		38.176	7.539	1	8212600			51206	6655	37228	37529	50008	50008					-0.13432865289314577
SSDPASDAMDP	11	Unmodified	_SSDPASDAMDP_					0	0	0		ENST00000469661.1_1_3:67048755-67053962:+|nuORF;ENSG00000163376|ENST00000417314|KBTBD8	ENST00000469661.1_1_3:67048755-67053962:+|nuORF	ENST00000469661.1_1_3:67048755-67053962:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	546.711136	1091.40772	-0.60096	-0.00032855	0.68992	0.00037719	0.088959	4.8635E-05	546.7114912521091	53.321	0.6595	53.321	52.997	53.656	0	-0.093054	-0.00013179	NaN	38.176	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8212600			51207	6655	37228	37529							-0.13432865289314577
SSDPASDAMDP	11	Unmodified	_SSDPASDAMDP_					0	0	0		ENST00000469661.1_1_3:67048755-67053962:+|nuORF;ENSG00000163376|ENST00000417314|KBTBD8	ENST00000469661.1_1_3:67048755-67053962:+|nuORF	ENST00000469661.1_1_3:67048755-67053962:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	546.711136	1091.40772	-1.283	-0.00070145	0.92695	0.00050677	-0.3561	-0.00019468	546.7115791742765	52.756	0.65887	53.507	53.183	53.842	0.75105	0.093054	0.00012738	NaN	38.176	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6236500			51208	6655	37228	37529							-0.13432865289314577
SSDPASQLSY	10	Unmodified	_SSDPASQLSY_					0	0	0		ENST00000536066.1_1_12:2967806-2973707:-|nuORF;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;chr12:2861412-2864320|463|17.76|0.58|4.94|-|ENST00000342628|FOXM1,FOXM1	ENST00000536066.1_1_12:2967806-2973707:-|nuORF	ENST00000536066.1_1_12:2967806-2973707:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	528.1376953125	2	527.738011	1053.46147	-0.54739	-0.00028888	-0.88856	-0.00046893	-1.436	-0.00075781	527.7375371949803	36.176	0.66162	36.176	35.727	36.389	0					21	12	3	0	0	0	0.017482	1	12070	12070		87.258	51.131	1	3954700			51209	409	37229	37530	50009	50009					-0.06312324795271707
SSDPASQLSY	10	Unmodified	_SSDPASQLSY_					0	0	0		ENST00000536066.1_1_12:2967806-2973707:-|nuORF;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;chr12:2861412-2864320|463|17.76|0.58|4.94|-|ENST00000342628|FOXM1,FOXM1	ENST00000536066.1_1_12:2967806-2973707:-|nuORF	ENST00000536066.1_1_12:2967806-2973707:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1055.3702392578125	1	1054.46875	1053.46147	0.081344	8.5775E-05	-0.085181	-8.982E-05	-0.0038363	-4.0452E-06	1054.4686248320888	53.327	1.1161	53.327	52.897	54.013	0					63	21	4	0	0	0	0.0019766	1	18990	18990		139.78	82.06	1	98374000			51210	409	37229	37530	50010	50010					-0.06312324795271707
SSDPASQLSY	10	Unmodified	_SSDPASQLSY_					0	0	0		ENST00000536066.1_1_12:2967806-2973707:-|nuORF;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;chr12:2861412-2864320|463|17.76|0.58|4.94|-|ENST00000342628|FOXM1,FOXM1	ENST00000536066.1_1_12:2967806-2973707:-|nuORF	ENST00000536066.1_1_12:2967806-2973707:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	528.2290649414062	2	527.738011	1053.46147	-0.57502	-0.00030346	-0.032862	-1.7343E-05	-0.60788	-0.0003208	527.7379990635914	53.326	1.6199	53.326	52.897	54.516	0					91	31	5	0	0	0	2.6091E-10	3	19125	19117;19125;19129		211.85	136.09	1	215450000			51211	409	37229	37530	50011;50012;50013	50012					-0.06312324795271707
SSDPASQLSY	10	Unmodified	_SSDPASQLSY_					0	0	0		ENST00000536066.1_1_12:2967806-2973707:-|nuORF;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;chr12:2861412-2864320|463|17.76|0.58|4.94|-|ENST00000342628|FOXM1,FOXM1	ENST00000536066.1_1_12:2967806-2973707:-|nuORF	ENST00000536066.1_1_12:2967806-2973707:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	528.1372680664062	2	527.738011	1053.46147	-0.71181	-0.00037565	-2.3935	-0.0012631	-3.1053	-0.0016388	527.7361211622667	35.441	1.1664	36.204	35.727	36.894	0.76338					26	22	2	0	0	0	0.033253	1	12861	12861		80.676	47.231	1	4567000			51212	409	37229	37530	50014	50014					-0.06312324795271707
SSDPASQLSY	10	Unmodified	_SSDPASQLSY_					0	0	0		ENST00000536066.1_1_12:2967806-2973707:-|nuORF;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;chr12:2861412-2864320|463|17.76|0.58|4.94|-|ENST00000342628|FOXM1,FOXM1	ENST00000536066.1_1_12:2967806-2973707:-|nuORF	ENST00000536066.1_1_12:2967806-2973707:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	528.2290649414062	2	527.738011	1053.46147	-0.99372	-0.00052442	-0.019926	-1.0516E-05	-1.0136	-0.00053494	527.7379956362175	52.711	1.4234	53.462	53.082	54.505	0.75105					92	27	5	0	0	0	2.6921E-05	2	19810	19810;19932		184.36	128.85	1	207980000			51213	409	37229	37530	50015;50016	50015					-0.06312324795271707
SSDPASQLSY	10	Unmodified	_SSDPASQLSY_					0	0	0		ENST00000536066.1_1_12:2967806-2973707:-|nuORF;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;chr12:2861412-2864320|463|17.76|0.58|4.94|-|ENST00000342628|FOXM1,FOXM1	ENST00000536066.1_1_12:2967806-2973707:-|nuORF	ENST00000536066.1_1_12:2967806-2973707:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1055.3707275390625	1	1054.46875	1053.46147	-0.4335	-0.00045711	0.046352	4.8877E-05	-0.38715	-0.00040824	1054.468783716856	52.733	1.1672	53.484	53.082	54.249	0.75105					62	22	5	0	0	0	0.0019766	1	19879	19879		139.78	89.849	1	92177000			51214	409	37229	37530	50017	50017					-0.06312324795271707
SSDPDQLVY	9	Unmodified	_SSDPDQLVY_					0	0	0		nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;ENST00000553276.1_1_12:56093317-56093771:-|nuORF	nc|ENSG00000135424|Q13683-9|ITGA7	nc|ENSG00000135424|Q13683-9|ITGA7	MULTI-MSMS	A375_MHC_IP_R1	1	513.1910400390625	2	512.235104	1022.45566	-0.43931	-0.00022503	-0.15731	-8.058E-05	-0.59662	-0.00030561	512.2349847307394	63.546	1.4771	63.546	63.069	64.546	0					81	28	5	0	0	0	0.0097736	2	22935	22864;22935		112.59	55.122	1	87245000			51215	4680	37230	37531	50018;50019	50019					-0.05467423306959063
SSDPDQLVY	9	Unmodified	_SSDPDQLVY_					0	0	0		nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;ENST00000553276.1_1_12:56093317-56093771:-|nuORF	nc|ENSG00000135424|Q13683-9|ITGA7	nc|ENSG00000135424|Q13683-9|ITGA7	MULTI-MSMS	A375_MHC_IP_R2	2	513.19091796875	2	512.235104	1022.45566	-0.73622	-0.00037712	0.034097	1.7466E-05	-0.70212	-0.00035965	512.2350956621469	62.917	1.419	63.659	63.13	64.549	0.74263					85	27	5	0	0	0	0.018546	3	23773	23736;23773;23949		85.272	39.251	1	136410000			51216	4680	37230	37531	50020;50021;50022	50021					-0.05467423306959063
SSDPFLNSGTY	11	Unmodified	_SSDPFLNSGTY_					0	0	0		nc|ENSG00000137693|P46937-4|YAP1;nc|ENSG00000137693|P46937-2|YAP1;nc|ENSG00000137693|P46937-8|YAP1;ENSG00000137693|ENST00000282441|YAP1;nc|ENSG00000137693|P46937-9|YAP1;nc|ENSG00000137693|P46937-5|YAP1;nc|ENSG00000137693|P46937-3|YAP1;nc|ENSG00000137693|P46937-6|YAP1;nc|ENSG00000137693|P46937-7|YAP1	nc|ENSG00000137693|P46937-4|YAP1	nc|ENSG00000137693|P46937-4|YAP1	MULTI-MSMS	A375_MHC_IP_R1	1	594.6646118164062	2	594.264393	1186.51423	-0.36928	-0.00021945	0.46355	0.00027547	0.094273	5.6023E-05	594.2646248090317	81.436	0.80992	81.436	81.151	81.961	0					40	15	3	0	0	0	1.5686E-05	2	29722	29722;29865		147.24	114.45	1	8323900			51217	4904	37231	37532	50023;50024	50023					-0.07156366732465358
SSDPFLNSGTY	11	Unmodified	_SSDPFLNSGTY_					0	0	0		nc|ENSG00000137693|P46937-4|YAP1;nc|ENSG00000137693|P46937-2|YAP1;nc|ENSG00000137693|P46937-8|YAP1;ENSG00000137693|ENST00000282441|YAP1;nc|ENSG00000137693|P46937-9|YAP1;nc|ENSG00000137693|P46937-5|YAP1;nc|ENSG00000137693|P46937-3|YAP1;nc|ENSG00000137693|P46937-6|YAP1;nc|ENSG00000137693|P46937-7|YAP1	nc|ENSG00000137693|P46937-4|YAP1	nc|ENSG00000137693|P46937-4|YAP1	MULTI-MSMS	A375_MHC_IP_R2	2	594.2139282226562	2	594.264393	1186.51423	-0.64637	-0.00038411	0.18012	0.00010704	-0.46624	-0.00027707	594.2644516203057	80.829	1.3721	81.574	81.163	82.535	0.74473					40	19	3	0	0	0	1.1292E-12	2	30718	30658;30718		174.48	136.93	1	9229900			51218	4904	37231	37532	50025;50026	50026					-0.07156366732465358
SSDPGALMY	9	Oxidation (M)	_SSDPGALM(Oxidation (M))Y_		SSDPGALM(1)Y		SSDPGALM(51)Y	0	0	1		ENSG00000118113|ENST00000236826|MMP8;ENST00000528662.6_1_11:102584081-102593757:-|nuORF	ENSG00000118113|ENST00000236826|MMP8	ENSG00000118113|ENST00000236826|MMP8	MULTI-SECPEP	A375_MHC_IP_R2	2	479.1047058105469	2	478.705125	955.395698	-0.8135	-0.00038943	0.10674	5.1099E-05	-0.70676	-0.00033833	478.70519613983464	49.373	0.80999	50.13	49.741	50.551	0.75737					22	15	2	0	0	0	0.089948	1	18538	18538		50.855	23.971	1	3472500			51219	3525	37232	37533	50027	50027		181			-0.0837843724183358
SSDPGALMY	9	Oxidation (M)	_SSDPGALM(Oxidation (M))Y_					0	0	1		ENSG00000118113|ENST00000236826|MMP8;ENST00000528662.6_1_11:102584081-102593757:-|nuORF	ENSG00000118113|ENST00000236826|MMP8	ENSG00000118113|ENST00000236826|MMP8	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	478.705125	955.395698	-0.3101	-0.00014845	-0.7729	-0.00036999	-1.083	-0.00051844	478.7050247170035	49.973	1.0208	49.973	49.336	50.357	0	-0.078628	-0.00054603	NaN	50.855	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2323800			51220	3525	37232	37533				181			-0.0837843724183358
SSDPIALGV	9	Unmodified	_SSDPIALGV_					0	0	0		ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	MULTI-SECPEP	A375_MHC_IP_R1	1	858.8560180664062	1	858.456724	857.449448	-0.51294	-0.00044034	-0.34429	-0.00029556	-0.85723	-0.0007359	858.4565282643002	85.204	0.4568	85.204	85.005	85.462	0					12	8	2	0	0	0	0.47368	1	31302	31302		34.102	18.255	1	1921000			51221	5012	37233	37534	50028	50028					0.015021032521872257
SSDPIALGV	9	Unmodified	_SSDPIALGV_					0	0	0		ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	MULTI-MATCH	A375_MHC_IP_R2	2		1	858.456724	857.449448	-0.53702	-0.00046101	0.71144	0.00061074	0.17442	0.00014973	858.4570310094443	84.393	0.40533	85.129	84.916	85.322	0.73602	-0.037412	0.00060273	NaN	34.102	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1530500			51222	5012	37233	37534							0.015021032521872257
SSDPYHSGY	9	Unmodified	_SSDPYHSGY_					0	0	0		nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	MULTI-SECPEP	A375_MHC_IP_R1	1	507.1034240722656	2	506.703971	1011.39339	-0.5185	-0.00026273	-0.20996	-0.00010639	-0.72846	-0.00036911	506.70379765442266	24.473	0.50445	24.473	24.296	24.801	0					21	9	3	0	0	0	0.006701	1	6957	6957		149.99	106.14	1	21619000			51223	1855	37234	37535	50029	50029					-0.11185149655273108
SSDPYHSGY	9	Unmodified	_SSDPYHSGY_					0	0	0		nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	nc|ENSG00000087087|Q9BXP5-4|SRRT	MULTI-SECPEP	A375_MHC_IP_R2	2	507.10357666015625	2	506.703971	1011.39339	-0.98933	-0.0005013	0.10849	5.497E-05	-0.88085	-0.00044633	506.7039853896865	24.022	0.56109	24.662	24.444	25.006	0.64005					18	10	2	0	0	0	0.011358	1	7820	7820		120.45	76.592	1	7578000			51224	1855	37234	37535	50030	50030					-0.11185149655273108
SSDRFGKAFP	10	Unmodified	_SSDRFGKAFP_					0	0	0			REV__ENST00000492961.1_1_7:35271114-35293240:-|nuORF	REV__ENST00000492961.1_1_7:35271114-35293240:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	556.596435546875	2	556.28018	1110.54581	-1.2204	-0.00067889	-0.2133	-0.00011866	-1.4337	-0.00079755	556.7816434030996	52.507	0.40536	53.259	53.083	53.489	0.75225					11	7	2	0	0	0	0.90853	1	19859	19859		3.5965	0	1	1545000	+		51225	20499	37235	37536	50031	50031					-0.005043291878337186
SSDRTITEY	9	Unmodified	_SSDRTITEY_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;ENST00000471359.1_1_20:25274602-25277155:+|nuORF	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R1	1	536.6509399414062	2	536.251286	1070.48802	-0.78848	-0.00042282	0.020658	1.1078E-05	-0.76782	-0.00041174	536.2513673677973	28.212	1.4661	28.212	27.937	29.403	0					84	28	5	0	0	0	0.0098859	2	8629	8629;8878		117.76	61.584	1	656440000			51226	2241	37236	37537	50032;50033	50032					-0.04440635903961265
SSDRTITEY	9	Unmodified	_SSDRTITEY_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;ENST00000471359.1_1_20:25274602-25277155:+|nuORF	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R2	2	536.6508178710938	2	536.251286	1070.48802	-0.84642	-0.00045389	0.055418	2.9718E-05	-0.791	-0.00042417	536.2513847633267	27.646	1.1157	28.325	27.996	29.112	0.67857					67	21	5	0	0	0	0.0098859	2	9425	9425;9679		117.76	61.584	1	548350000			51227	2241	37236	37537	50034;50035	50034					-0.04440635903961265
SSDSCCCCCC	10	Unmodified	_SSDSCCCCCC_					0	0	0			REV__ENST00000531526.5_1_11:45944386-45945084:+|nuORF	REV__ENST00000531526.5_1_11:45944386-45945084:+|nuORF	MSMS	A375_MHC_IP_R2	2	507.1358947753906	2	507.101626	1012.1887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.12	1	100.89	100.39	101.39	0.76278								0	0	0	0.15642	1	37970	37970		0	0	1		+		51228	25853	37237	37538	50036	50036					-0.3169069871149759
SSDSEMAI	8	Unmodified	_SSDSEMAI_					0	0	0		ENSG00000264424|ENST00000255381|MYH4;ENSG00000109061|ENST00000226207|MYH1	ENSG00000264424|ENST00000255381|MYH4	ENSG00000264424|ENST00000255381|MYH4	MSMS	A375_MHC_IP_R2	2	420.1790771484375	2	420.176201	838.337848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.78	1	103.55	103.05	104.05	0.76428								0	0	0	0.16876	1	38937	38937		5.7604	0	1				51229	9953	37238	37539	50037	50037					-0.0877869916724876
SSDSKQRW	8	Unmodified	_SSDSKQRW_					0	0	0			REV__LAD1|p.G506R|1|0.17|ENSG00000159166|chr1:201382284-201382284|C/T|missense_variant	REV__LAD1|p.G506R|1|0.17|ENSG00000159166|chr1:201382284-201382284|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	497.15576171875	2	497.241055	992.467557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.153	1	57.153	56.653	57.653	0								0	0	0	0.16876	1	20494	20494		20.871	0.41758	1		+		51230	26913	37239	37540	50038	50038					-0.02897761773090224
SSDSPGLLSF	10	Unmodified	_SSDSPGLLSF_					0	0	0		MSGN1|p.S26F|1|0.31|ENSG00000151379|chr2:17816595-17816595|C/T|missense_variant	MSGN1|p.S26F|1|0.31|ENSG00000151379|chr2:17816595-17816595|C/T|missense_variant	MSGN1|p.S26F|1|0.31|ENSG00000151379|chr2:17816595-17816595|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	506.14813232421875	2	505.245472	1008.47639	-0.63018	-0.0003184	0.11701	5.9117E-05	-0.51317	-0.00025928	505.748287387149	25.919	0.45602	25.919	25.765	26.221	0					18	8	3	0	0	0	0.55789	1	7670	7670		24.021	0	1	4449300			51231	14410	37240	37541	50039	50039					-0.02750832927256397
SSDSVGGFRY	10	Unmodified	_SSDSVGGFRY_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MULTI-SECPEP	A375_MHC_IP_R1	1	538.1459350585938	2	537.74617	1073.47779	-0.81319	-0.00043729	0.18459	9.9262E-05	-0.6286	-0.00033802	537.7462860098223	46.723	1.0191	46.723	46.295	47.315	0					54	19	4	0	0	0	0.028212	1	16340	16340		103.42	72.783	1	42337000			51232	3137	37241	37542	50040	50040					-0.056011988384852884
SSDSVGGFRY	10	Unmodified	_SSDSVGGFRY_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MULTI-MSMS	A375_MHC_IP_R2	2	538.6741943359375	2	537.74617	1073.47779	-0.81517	-0.00043835	0.23998	0.00012905	-0.57519	-0.00030931	537.7462724816713	46.015	0.91052	46.78	46.403	47.313	0.76519					55	17	5	0	0	0	0.33265	1	17331	17331		38.176	11.907	1	53643000			51233	3137	37241	37542	50041	50041					-0.056011988384852884
SSDTADFRDLY	11	Unmodified	_SSDTADFRDLY_					0	0	0		nc|ENSG00000160767|P81408-2|ENTREP3;nc|ENSG00000160767|P81408-3|ENTREP3;ENSG00000160767|ENST00000361361|ENTREP3;nc|ENSG00000160767|P81408-4|ENTREP3;ENST00000368366.5_1_1:155217575-155221373:-|nuORF	nc|ENSG00000160767|P81408-2|ENTREP3	nc|ENSG00000160767|P81408-2|ENTREP3	MULTI-MSMS	A375_MHC_IP_R1	1	646.1897583007812	2	645.285857	1288.55716	-0.74373	-0.00047992	1.0594	0.00068361	0.31566	0.00020369	645.2862169596406	67.361	0.66416	67.361	66.99	67.654	0					31	12	3	0	0	0	0.13939	1	24392	24392		63.227	47.078	1	3145300			51234	6440	37242	37543	50042	50042					-0.07557596675042078
SSDTADFRDLY	11	Unmodified	_SSDTADFRDLY_					0	0	0		nc|ENSG00000160767|P81408-2|ENTREP3;nc|ENSG00000160767|P81408-3|ENTREP3;ENSG00000160767|ENST00000361361|ENTREP3;nc|ENSG00000160767|P81408-4|ENTREP3;ENST00000368366.5_1_1:155217575-155221373:-|nuORF	nc|ENSG00000160767|P81408-2|ENTREP3	nc|ENSG00000160767|P81408-2|ENTREP3	MULTI-SECPEP	A375_MHC_IP_R2	2	645.6859741210938	2	645.285857	1288.55716	-0.77501	-0.0005001	0.72951	0.00047074	-0.045504	-2.9363E-05	645.286171251507	66.769	0.76216	67.505	67.138	67.9	0.73631					25	11	3	0	0	0	0.12923	1	25307	25307		84.738	63.201	1	4106200			51235	6440	37242	37543	50043	50043					-0.07557596675042078
SSDTKFAK	8	Unmodified	_SSDTKFAK_					0	0	0			REV__ENSG00000198794|ENST00000425597|SCAMP5	REV__ENSG00000198794|ENST00000425597|SCAMP5	MSMS	A375_MHC_IP_R1	1	442.15350341796875	2	442.229625	882.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.302	1	19.302	18.802	19.802	0								0	0	0	0.16876	1	4668	4668		8.5933	0	1		+		51236	22420	37243	37544	50044	50044					-0.0012278089056962926
SSDTSKSTY	9	Unmodified	_SSDTSKSTY_					0	0	0		ENSG00000103528|ENST00000355377|SYT17	ENSG00000103528|ENST00000355377|SYT17	ENSG00000103528|ENST00000355377|SYT17	MULTI-SECPEP	A375_MHC_IP_R1	1	487.97698974609375	2	488.216911	974.41927	-0.3543	-0.00017298	0.4812	0.00023493	0.1269	6.1953E-05	488.21719028237123	27.306	0.4051	27.306	27.179	27.584	0					10	7	2	0	0	0	0.75466	1	8233	8233		12.532	3.1841	1	2812400			51237	2460	37244	37545	50045	50045					-0.06896300203663941
SSDTSKSTY	9	Unmodified	_SSDTSKSTY_					0	0	0		ENSG00000103528|ENST00000355377|SYT17	ENSG00000103528|ENST00000355377|SYT17	ENSG00000103528|ENST00000355377|SYT17	MULTI-MATCH	A375_MHC_IP_R2	2		2	488.216911	974.41927	-0.8813	-0.00043027	0.96527	0.00047126	0.083964	4.0993E-05	488.21717604055874	26.769	0.25509	27.428	27.262	27.517	0.65992	0.061331	0.00037238	NaN	12.532	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1465700			51238	2460	37244	37545							-0.06896300203663941
SSDTSYIDY	9	Unmodified	_SSDTSYIDY_					0	0	0		ENST00000560775.5_2_15:44957989-44959306:-|nuORF	ENST00000560775.5_2_15:44957989-44959306:-|nuORF	ENST00000560775.5_2_15:44957989-44959306:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	525.6848754882812	2	525.716744	1049.41894	-0.58896	-0.00030963	-1.117	-0.00058723	-1.706	-0.00089685	525.7167256936629	46.673	1.1172	46.673	46.094	47.211	0					30	21	2	0	0	0	0.63811	1	16473	16473		12.532	0	1	3880200			51239	13500	37245	37546	50046	50046					-0.10379719923503217
SSDTTIFLPK	10	Unmodified	_SSDTTIFLPK_					0	0	0			REV__KDM3B|p.R921Vfs*5|1|0.38|ENSG00000120733|chr5:138393301-138393302|GC/-|frameshift_variant	REV__KDM3B|p.R921Vfs*5|1|0.38|ENSG00000120733|chr5:138393301-138393302|GC/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	554.3839111328125	2	554.797872	1107.58119	-0.97173	-0.00053912	1.1228	0.00062293	0.15107	8.3811E-05	554.7983780236075	28.132	0.35551	28.811	28.604	28.96	0.67857					12	6	2	0	0	0	0.85226	1	9689	9689		14.838	6.0929	1	2242200	+		51240	18135	37246	37547	50047	50047					0.031702885492677524
SSDTTVKVW	9	Unmodified	_SSDTTVKVW_					0	0	0		ENSG00000114742|ENST00000302313|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48	ENSG00000114742|ENST00000302313|WDR48	ENSG00000114742|ENST00000302313|WDR48	MULTI-SECPEP	A375_MHC_IP_R1	1	512.1609497070312	2	511.761289	1021.50803	-0.16025	-8.201E-05	-0.44332	-0.00022687	-0.60357	-0.00030888	511.7610534429042	48.197	0.6062	48.197	47.87	48.476	0					16	11	2	0	0	0	0.013591	1	16997	16997		106.94	28.212	1	3862800			51241	3241	37247	37548	50048	50048					-0.0018684017333043812
SSDTTVKVW	9	Unmodified	_SSDTTVKVW_					0	0	0		ENSG00000114742|ENST00000302313|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48	ENSG00000114742|ENST00000302313|WDR48	ENSG00000114742|ENST00000302313|WDR48	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1611328125	2	511.761289	1021.50803	-0.58109	-0.00029738	-0.056422	-2.8875E-05	-0.63752	-0.00032626	511.76129923125956	47.356	0.50934	48.117	47.817	48.326	0.76128					15	9	2	0	0	0	0.038931	1	17763	17763		90.135	17.167	1	2812800			51242	3241	37247	37548	50049	50049					-0.0018684017333043812
SSDVFLDVSAS	11	Unmodified	_SSDVFLDVSAS_					0	0	0			REV__ENSG00000196233|ENST00000421806|LCOR	REV__ENSG00000196233|ENST00000421806|LCOR	MULTI-MSMS	A375_MHC_IP_R2	2	564.6682739257812	2	563.766768	1125.51898	-0.55488	-0.00031282	0.091152	5.1388E-05	-0.46373	-0.00026144	563.766797104938	39.845	0.50771	40.62	40.422	40.93	0.77451					24	9	3	0	0	0	0.60747	1	14772	14772		22.736	0	1	7595200	+		51243	22174	37248	37549	50050	50050					-0.038754825897058254
SSDVKLLLLG	10	Unmodified	_SSDVKLLLLG_					0	0	0		ENST00000451653.5_2_3:42589940-42590111:-|nuORF	ENST00000451653.5_2_3:42589940-42590111:-|nuORF	ENST00000451653.5_2_3:42589940-42590111:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	524.3562622070312	2	522.818607	1043.62266	-0.45434	-0.00023754	0.012179	6.3676E-06	-0.44216	-0.00023117	522.8185482569129	63.452	0.86756	63.452	63.173	64.04	0					42	16	4	0	0	0	0.70329	1	22981	22981		10.824	4.1008	1	27638000			51244	12074	37249	37550	50051	50051					0.10259469308630287
SSDVVHVK	8	Unmodified	_SSDVVHVK_					0	0	0		ENST00000479057.1_1_17:560036-560321:-|nuORF	ENST00000479057.1_1_17:560036-560321:-|nuORF	ENST00000479057.1_1_17:560036-560321:-|nuORF	MSMS	A375_MHC_IP_R1	1	435.6536560058594	2	435.737617	869.460681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.996	1	35.996	35.496	36.496	0								0	0	0	0.16876	1	12013	12013		19.439	0	1				51245	12469	37250	37551	50052	50052					0.02072925346340071
SSDYPAPRAV	10	Unmodified	_SSDYPAPRAV_					0	0	0		nc|ENSG00000172915|Q8NFP9|NBEA;ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9-2|NBEA;nc|ENSG00000172915|Q8NFP9-3|NBEA	nc|ENSG00000172915|Q8NFP9|NBEA	nc|ENSG00000172915|Q8NFP9|NBEA	MULTI-MSMS	A375_MHC_IP_R1	1	355.46002197265625	3	354.845334	1061.51417	0.23515	8.3443E-05	-0.23959	-8.5018E-05	-0.0044409	-1.5758E-06	354.84525350779217	39.149	0.71223	39.149	38.679	39.391	0					23	13	3	0	0	0	0.70496	1	13311	13311		8.9762	4.0792	1	3270700			51246	7745	37251	37552	50053	50053					-0.01412321941825212
SSDYPAPRAV	10	Unmodified	_SSDYPAPRAV_					0	0	0		nc|ENSG00000172915|Q8NFP9|NBEA;ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9-2|NBEA;nc|ENSG00000172915|Q8NFP9-3|NBEA	nc|ENSG00000172915|Q8NFP9|NBEA	nc|ENSG00000172915|Q8NFP9|NBEA	MULTI-MSMS	A375_MHC_IP_R2	2	355.45977783203125	3	354.845334	1061.51417	-0.57363	-0.00020355	0.035856	1.2723E-05	-0.53777	-0.00019083	355.17961778890344	38.349	1.7322	39.124	37.618	39.351	0.77451					45	33	3	0	0	0	0.70496	3	13901	13650;13901;14153		8.9762	5.0999	1	3362500			51247	7745	37251	37552	50054;50055;50056	50055					-0.01412321941825212
SSEAEEEEEEE	11	Unmodified	_SSEAEEEEEEE_					0	0	0		nc|ENSG00000054267|Q4LE39-2|ARID4B;ENSG00000054267|ENST00000264183|ARID4B;ENST00000491632.5_1_1:235341091-235490234:-|nuORF;nc|ENSG00000054267|Q4LE39-3|ARID4B;ENST00000466653.1_1_1:235392530-235490234:-|nuORF	nc|ENSG00000054267|Q4LE39-2|ARID4B	nc|ENSG00000054267|Q4LE39-2|ARID4B	MULTI-MSMS	A375_MHC_IP_R2	2	649.133544921875	2	648.733516	1295.45248	-0.71781	-0.00046567	1.1181	0.00072537	0.40032	0.0002597	648.7337573411244	30.823	0.55402	31.542	31.216	31.77	0.71857					20	10	3	0	0	0	0.72728	1	10880	10880		11.495	4.7715	1	2202800			51248	1257	37252	37553	50057	50057					-0.1834280773291539
SSEAHLQQY	9	Unmodified	_SSEAHLQQY_					0	0	0		NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant;ENSG00000180530|ENST00000318948|NRIP1	NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant	NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	532.1456298828125	2	531.74617	1061.47779	-0.73425	-0.00039044	0.032949	1.752E-05	-0.7013	-0.00037291	531.7461683937169	24.523	0.5558	24.523	24.347	24.903	0					20	10	2	0	0	0	1.2097E-07	1	6961	6961		223.06	164.38	1	40042000			51249	8302	37253	37554	50058	50058					-0.050491988385147124
SSEAHLQQY	9	Unmodified	_SSEAHLQQY_					0	0	0		NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant;ENSG00000180530|ENST00000318948|NRIP1	NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant	NRIP1|p.H952Tfs*18|1|0.36|ENSG00000180530|chr21:14965339-14965339|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	532.1454467773438	2	531.74617	1061.47779	-0.92719	-0.00049303	0.02196	1.1677E-05	-0.90523	-0.00048135	531.7461639289401	23.881	0.71327	24.511	24.333	25.046	0.63014					27	13	3	0	0	0	0.010732	1	7762	7762		183.04	125.32	1	15566000			51250	8302	37253	37554	50059	50059					-0.050491988385147124
SSEALYNQY	9	Unmodified	_SSEALYNQY_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-SECPEP	A375_MHC_IP_R1	1	538.1405029296875	2	537.740554	1073.46655	-0.52296	-0.00028122	-0.24591	-0.00013223	-0.76887	-0.00041345	537.7403729095776	51.836	0.56021	51.836	51.525	52.085	0					16	10	2	0	0	0	0.023756	1	18412	18412		92.822	47.123	1	2172300			51251	9382	37254	37555	50060	50060					-0.06724020932665553
SSEALYNQY	9	Unmodified	_SSEALYNQY_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-SECPEP	A375_MHC_IP_R2	2	538.1403198242188	2	537.740554	1073.46655	-1.0216	-0.00054936	-0.31518	-0.00016948	-1.3368	-0.00071885	537.7404971340353	51.222	0.60713	51.974	51.663	52.27	0.75225					17	11	2	0	0	0	0.030624	1	19286	19286		88.904	54.502	1	2446000			51252	9382	37254	37555	50061	50061					-0.06724020932665553
SSEEDDDEEDY	11	Unmodified	_SSEEDDDEEDY_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MSMS	A375_MHC_IP_R2	2	666.7471923828125	2	666.715324	1331.41609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.945	1	63.688	63.188	64.188	0.74263								0	0	0	0.16331	1	23865	23865		1.4819	0.15237	1				51253	6048	37255	37556	50062	50062					-0.23635684629653042
SSEELPLYY	9	Unmodified	_SSEELPLYY_					0	0	0		nc|ENSG00000163728|Q96N46-3|TTC14;nc|ENSG00000163728|Q96N46-2|TTC14;ENSG00000163728|ENST00000296015|TTC14	nc|ENSG00000163728|Q96N46-3|TTC14	nc|ENSG00000163728|Q96N46-3|TTC14	MULTI-MSMS	A375_MHC_IP_R1	1	1102.238525390625	1	1100.51463	1099.50736	0.075166	8.2721E-05	-0.20972	-0.0002308	-0.13455	-0.00014808	1100.5143793373315	99.549	0.65718	99.549	99.168	99.825	0					27	12	3	0	0	0	0.018481	1	36542	36542		85.357	61.336	1	10856000			51254	6713	37256	37557	50063	50063					-0.038416796130377406
SSEELPLYY	9	Unmodified	_SSEELPLYY_					0	0	0		nc|ENSG00000163728|Q96N46-3|TTC14;nc|ENSG00000163728|Q96N46-2|TTC14;ENSG00000163728|ENST00000296015|TTC14	nc|ENSG00000163728|Q96N46-3|TTC14	nc|ENSG00000163728|Q96N46-3|TTC14	MULTI-SECPEP	A375_MHC_IP_R1	1	551.1605834960938	2	550.760955	1099.50736	-0.55688	-0.00030671	-0.22233	-0.00012245	-0.77921	-0.00042916	550.7607688901707	99.523	0.7069	99.523	99.218	99.925	0					29	13	3	0	0	0	0.011229	1	36541	36541		109.63	79.404	1	6237200			51255	6713	37256	37557	50064	50064					-0.038416796130377406
SSEELPLYY	9	Unmodified	_SSEELPLYY_					0	0	0		nc|ENSG00000163728|Q96N46-3|TTC14;nc|ENSG00000163728|Q96N46-2|TTC14;ENSG00000163728|ENST00000296015|TTC14	nc|ENSG00000163728|Q96N46-3|TTC14	nc|ENSG00000163728|Q96N46-3|TTC14	MULTI-MSMS	A375_MHC_IP_R2	2	551.1607666015625	2	550.760955	1099.50736	-0.67062	-0.00036935	0.24944	0.00013738	-0.42117	-0.00023197	550.7609928417621	98.872	0.76006	99.632	99.201	99.961	0.75977					34	14	3	0	0	0	0.015336	2	37444	37444;37590		89.427	53.383	1	10329000			51256	6713	37256	37557	50065;50066	50065					-0.038416796130377406
SSEELPLYY	9	Unmodified	_SSEELPLYY_					0	0	0		nc|ENSG00000163728|Q96N46-3|TTC14;nc|ENSG00000163728|Q96N46-2|TTC14;ENSG00000163728|ENST00000296015|TTC14	nc|ENSG00000163728|Q96N46-3|TTC14	nc|ENSG00000163728|Q96N46-3|TTC14	MULTI-MATCH	A375_MHC_IP_R2	2		1	1100.51463	1099.50736	0.21263	0.000234	-0.093517	-0.00010292	0.11911	0.00013108	1100.514409187714	98.829	0.60788	99.589	99.301	99.909	0.75977	0.019877	6.0917E-05	NaN	85.357	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9611000			51257	6713	37256	37557							-0.038416796130377406
SSEGPRVWFV	10	Unmodified	_SSEGPRVWFV_					0	0	0		CON__Q3ZBD7	CON__Q3ZBD7	CON__Q3ZBD7	MULTI-MSMS	A375_MHC_IP_R2	2	582.6945190429688	2	582.29583	1162.57711	-0.36998	-0.00021544	-1.1956	-0.00069621	-1.5656	-0.00091165	582.2950895030269	76.806	0.60447	77.548	77.302	77.906	0.74145					20	11	2	0	0	0	0.50967	1	29157	29157		27.629	27.629	1	8401000		+	51258	621	37257	37558	50067	50067					0.0023224384622153593
SSEGPRVWFV	10	Unmodified	_SSEGPRVWFV_					0	0	0		CON__Q3ZBD7	CON__Q3ZBD7	CON__Q3ZBD7	MULTI-MATCH	A375_MHC_IP_R1	1		2	582.29583	1162.57711	-0.19103	-0.00011123	-1.6159	-0.00094095	-1.807	-0.0010522	582.294823901002	77.69	0.56049	77.69	77.386	77.946	0	0.071192	-0.00016765	NaN	27.629	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8964700		+	51259	621	37257	37558							0.0023224384622153593
SSEILNDSIST	11	Unmodified	_SSEILNDSIST_					0	0	0		nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	MULTI-SECPEP	A375_MHC_IP_R2	2	583.21630859375	2	583.282783	1164.55101	-0.95729	-0.00055837	-0.93752	-0.00054684	-1.8948	-0.0011052	583.2825484676653	53.514	0.5624	54.265	53.995	54.557	0.75105					22	10	3	0	0	0	0.65968	1	20259	20259		34.932	0.82963	1	1853900			51260	14904	37258	37559	50068	50068					-0.02468114906560004
SSEITSLYY	9	Unmodified	_SSEITSLYY_					0	0	0		nc|ENSG00000009694|Q9UKZ4-2|TENM1;ENSG00000009694|ENST00000371130|TENM1;TENM3|p.S2266L|1|0.17|ENSG00000218336|chr4:182793469-182793469|C/T|missense_variant;ENSG00000218336|ENST00000511685|TENM3;ENSG00000149256|ENST00000278550|TENM4	nc|ENSG00000009694|Q9UKZ4-2|TENM1;ENSG00000218336|ENST00000511685|TENM3;ENSG00000149256|ENST00000278550|TENM4	ENSG00000218336|ENST00000511685|TENM3	MULTI-SECPEP	A375_MHC_IP_R1	1	531.2048950195312	2	531.75313	1061.49171	-0.81271	-0.00043216	-1.6112	-0.00085675	-2.4239	-0.0012889	531.7520594989007	84.901	0.51035	84.901	84.545	85.056	0					13	9	2	0	0	0	0.60917	1	31085	31085		19.257	5.7491	1	1934600			51261	969;9655;5791	37259	37560	50069	50069					-0.03657966130094792
SSEITSLYY	9	Unmodified	_SSEITSLYY_					0	0	0		nc|ENSG00000009694|Q9UKZ4-2|TENM1;ENSG00000009694|ENST00000371130|TENM1;TENM3|p.S2266L|1|0.17|ENSG00000218336|chr4:182793469-182793469|C/T|missense_variant;ENSG00000218336|ENST00000511685|TENM3;ENSG00000149256|ENST00000278550|TENM4	nc|ENSG00000009694|Q9UKZ4-2|TENM1;ENSG00000218336|ENST00000511685|TENM3;ENSG00000149256|ENST00000278550|TENM4	ENSG00000218336|ENST00000511685|TENM3	MULTI-MSMS	A375_MHC_IP_R2	2	532.152587890625	2	531.75313	1061.49171	-0.59439	-0.00031607	-1.137	-0.00060459	-1.7314	-0.00092066	532.2535744161515	84.129	0.51349	84.869	84.559	85.073	0.73962					16	9	2	0	0	0	0.11296	1	31937	31937		48.346	19.859	1	2903500			51262	969;9655;5791	37259	37560	50070	50070					-0.03657966130094792
SSEKNHLL	8	Unmodified	_SSEKNHLL_					0	0	0		ENST00000278193.6_1_11:27516283-27516379:-|nuORF	ENST00000278193.6_1_11:27516283-27516379:-|nuORF	ENST00000278193.6_1_11:27516283-27516379:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	464.6480407714844	2	464.248349	926.482145	-0.52979	-0.00024595	0.00079021	3.6685E-07	-0.529	-0.00024559	464.24835673501536	70.033	0.55976	70.767	70.488	71.048	0.73421					16	10	2	0	0	0	0.972	1	26582	26582		2.5775	0	1	1967400			51263	10410	37260	37561	50071	50071					0.015963103750550545
SSELFTLTY	9	Unmodified	_SSELFTLTY_					0	0	0		ENST00000497251.1_1_1:36605278-36614725:-|nuORF;ENSG00000054116|ENST00000373166|TRAPPC3	ENST00000497251.1_1_1:36605278-36614725:-|nuORF	ENST00000497251.1_1_1:36605278-36614725:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	531.1629028320312	2	530.763497	1059.51244	-0.43466	-0.0002307	-0.25026	-0.00013283	-0.68492	-0.00036353	530.7632935021081	117.73	0.50787	117.73	117.51	118.02	0					16	9	2	0	0	0	0.0053385	1	43286	43286		162.95	106.41	1	6007600			51264	1253	37261	37562	50072	50072					-0.014933757504195455
SSELFTLTY	9	Unmodified	_SSELFTLTY_					0	0	0		ENST00000497251.1_1_1:36605278-36614725:-|nuORF;ENSG00000054116|ENST00000373166|TRAPPC3	ENST00000497251.1_1_1:36605278-36614725:-|nuORF	ENST00000497251.1_1_1:36605278-36614725:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	531.1625366210938	2	530.763497	1059.51244	-0.49275	-0.00026153	-0.11289	-5.9917E-05	-0.60564	-0.00032145	530.7635256755553	116.98	0.50876	117.64	117.43	117.94	0.65961					26	9	4	0	0	0	0.0053385	1	44250	44250		162.95	106.41	1	10645000			51265	1253	37261	37562	50073	50073					-0.014933757504195455
SSELFTLTY	9	Unmodified	_SSELFTLTY_					0	0	0		ENST00000497251.1_1_1:36605278-36614725:-|nuORF;ENSG00000054116|ENST00000373166|TRAPPC3	ENST00000497251.1_1_1:36605278-36614725:-|nuORF	ENST00000497251.1_1_1:36605278-36614725:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1060.3922119140625	1	1060.51972	1059.51244	0.20779	0.00022036	0.33966	0.00036021	0.54744	0.00058057	1060.519852640883	117.01	0.65971	117.67	117.28	117.94	0.65961					31	12	3	0	0	0	0.00082901	1	44300	44300		196.65	129.61	1	52043000			51266	1253	37261	37562	50074	50074					-0.014933757504195455
SSELFTLTY	9	Unmodified	_SSELFTLTY_					0	0	0		ENST00000497251.1_1_1:36605278-36614725:-|nuORF;ENSG00000054116|ENST00000373166|TRAPPC3	ENST00000497251.1_1_1:36605278-36614725:-|nuORF	ENST00000497251.1_1_1:36605278-36614725:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	1060.51972	1059.51244	0.28281	0.00029993	1.0421	0.0011052	1.3249	0.0014051	1060.5205721847408	117.8	0.81139	117.8	117.46	118.27	0	0.066765	0.00036044	NaN	196.65	46	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63067000			51267	1253	37261	37562							-0.014933757504195455
SSELPAFYSY	10	Unmodified	_SSELPAFYSY_					0	0	0		ENST00000460633.1_1_6:32605235-32610161:+|nuORF	ENST00000460633.1_1_6:32605235-32610161:+|nuORF	ENST00000460633.1_1_6:32605235-32610161:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	583.19677734375	2	582.266404	1162.51826	-0.1251	-7.2844E-05	-0.13646	-7.9457E-05	-0.26157	-0.0001523	582.2662675810116	78.067	2.1859	78.067	77.336	79.522	0					112	42	5	0	0	0	0.51963	1	28304	28304		26.884	7.6267	1	97759000			51268	12170	37262	37563	50075	50075					-0.05650277238760282
SSEMDDEDY	9	Unmodified	_SSEMDDEDY_					0	0	0		ENSG00000174744|ENST00000359957|BRMS1;ENST00000530238.5_1_11:66105966-66109705:-|nuORF;ENST00000525127.1_1_11:66108392-66109705:-|nuORF;ENST00000534617.5_1_11:66108392-66109705:-|nuORF	ENSG00000174744|ENST00000359957|BRMS1	ENSG00000174744|ENST00000359957|BRMS1	MSMS	A375_MHC_IP_R1	1	545.663330078125	2	545.679501	1089.34445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.605	1	59.605	59.105	60.105	0								0	0	0	0.15486	1	21442	21442		4.3292	0	1				51269	7897	37263	37564	50076	50076					-0.19664850797198596
SSENPWMTEY	10	Oxidation (M)	_SSENPWM(Oxidation (M))TEY_		SSENPWM(1)TEY		SSENPWM(100)TEY	0	0	1		ENSG00000154429|ENST00000284617|CCSAP;nc|ENSG00000154429|Q6IQ19-2|CCSAP;ENST00000483092.1_1_1:229460984-229462796:-|nuORF	ENSG00000154429|ENST00000284617|CCSAP	ENSG00000154429|ENST00000284617|CCSAP	MULTI-SECPEP	A375_MHC_IP_R1	1	630.64794921875	2	630.247886	1258.48122	-0.4862	-0.00030643	0.52137	0.00032859	0.035171	2.2167E-05	630.248347317841	71.164	1.0683	71.164	70.597	71.665	0					32	20	2	0	0	0	0.019704	1	25815	25815		100.09	77.354	1	2422200			51270	6086	37264	37565	50077	50077		324			-0.1376831684683566
SSENPWMTEY	10	Unmodified	_SSENPWMTEY_					0	0	0		ENSG00000154429|ENST00000284617|CCSAP;nc|ENSG00000154429|Q6IQ19-2|CCSAP;ENST00000483092.1_1_1:229460984-229462796:-|nuORF	ENSG00000154429|ENST00000284617|CCSAP	ENSG00000154429|ENST00000284617|CCSAP	MULTI-SECPEP	A375_MHC_IP_R2	2	621.654541015625	2	622.250428	1242.4863	-0.67207	-0.0004182	1.4444	0.00089875	0.77229	0.00048056	622.7531856928472	87.946	1.4184	88.678	88.217	89.635	0.7318					37	27	2	0	0	0	0.49165	1	33473	33473		42.312	13.231	1	4680300			51271	6086	37264	37566	50078	50078					-0.1252401298422683
SSEQNWQNL	9	Unmodified	_SSEQNWQNL_					0	0	0			REV__ENSG00000110318|ENST00000263468|CEP126	REV__ENSG00000110318|ENST00000263468|CEP126	MULTI-MSMS	A375_MHC_IP_R1	1	553.6484985351562	2	553.249077	1104.4836	-0.58185	-0.00032191	-0.21722	-0.00012018	-0.79908	-0.00044209	553.2488337182991	64.47	1.016	64.47	63.684	64.7	0					25	19	2	0	0	0	0.65721	1	23339	23339		10.824	2.9138	1	2189600	+		51272	17623	37265	37567	50079	50079					-0.06446100326843407
SSEQTFMYY	9	Oxidation (M)	_SSEQTFM(Oxidation (M))YY_		SSEQTFM(1)YY		SSEQTFM(82)YY	0	0	1		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	A375_MHC_IP_R1	1	586.6341552734375	2	586.234247	1170.45394	-0.43899	-0.00025735	0.26916	0.00015779	-0.16983	-9.9561E-05	586.234414874696	66.271	0.70916	66.271	65.819	66.529	0					34	13	3	0	0	0	0.021889	2	23936	23908;23936		81.89	60.144	1	3179200			51273	3336	37266	37568	50080;50081	50081		162			-0.12446800387215262
SSEQTFMYY	9	Oxidation (M)	_SSEQTFM(Oxidation (M))YY_		SSEQTFM(1)YY		SSEQTFM(59)YY	0	0	1		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	A375_MHC_IP_R2	2	586.6343994140625	2	586.234247	1170.45394	-0.70446	-0.00041298	0.15228	8.927E-05	-0.55218	-0.00032371	586.2343052151989	65.606	0.71224	66.345	65.968	66.68	0.73811					30	13	3	0	0	0	0.064406	1	24810	24810		58.679	33.28	1	4041900			51274	3336	37266	37568	50082	50082		162			-0.12446800387215262
SSEQTFMYY	9	Unmodified	_SSEQTFMYY_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-SECPEP	A375_MHC_IP_R1	1	578.6363525390625	2	578.23679	1154.45903	-0.38248	-0.00022116	-0.433	-0.00025038	-0.81547	-0.00047154	578.2365507970601	84.375	0.65948	84.375	84.141	84.8	0					17	12	2	0	0	0	0.71341	1	30945	30945		18.146	2.2992	1	2646800			51275	3336	37266	37569	50083	50083					-0.11202496524583694
SSEQTFMYY	9	Unmodified	_SSEQTFMYY_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-SECPEP	A375_MHC_IP_R2	2	578.6368408203125	2	578.23679	1154.45903	-0.14696	-8.4975E-05	-0.42521	-0.00024587	-0.57216	-0.00033084	578.2366045381003	83.811	0.71718	84.55	84.203	84.92	0.73962					18	13	2	0	0	0	0.4261	1	31853	31853		18.146	6.5061	1	2734300			51276	3336	37266	37569	50084	50084					-0.11202496524583694
SSERHVRTRLY	11	Unmodified	_SSERHVRTRLY_					0	0	0		PPIP5K2|p.P813S|1|0.53|ENSG00000145725|chr5:103173880-103173880|C/T|missense_variant	PPIP5K2|p.P813S|1|0.53|ENSG00000145725|chr5:103173880-103173880|C/T|missense_variant	PPIP5K2|p.P813S|1|0.53|ENSG00000145725|chr5:103173880-103173880|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	468.65057373046875	3	468.588258	1402.74294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.823	1	38.598	38.098	39.098	0.77451								0	0	0	0.16275	1	13868	13868		4.4062	1.3339	1				51277	15214	37267	37570	50085	50085					0.0576827035495171
SSESGHYYSY	10	Unmodified	_SSESGHYYSY_					0	0	0		ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000170185|Q8NB14-2|USP38	ENSG00000170185|ENST00000307017|USP38	ENSG00000170185|ENST00000307017|USP38	MULTI-MSMS	A375_MHC_IP_R2	2	590.6329345703125	2	590.233093	1178.45163	-0.55453	-0.0003273	0.82343	0.00048602	0.2689	0.00015871	590.2333880714838	27.698	0.30263	28.376	28.2	28.502	0.67857					8	5	2	0	0	0	0.074642	1	9532	9532		69.105	36.799	1	3195400			51278	7479	37268	37571	50086	50086					-0.13045512800658798
SSESVRSCVK	10	Unmodified	_SSESVRSCVK_					0	0	0		ENST00000592072.1_1_17:40939341-40946077:+|nuORF	ENST00000592072.1_1_17:40939341-40946077:+|nuORF	ENST00000592072.1_1_17:40939341-40946077:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	541.2057495117188	2	541.268955	1080.52336	-0.60433	-0.00032711	2.6072	0.0014112	2.0028	0.0010841	541.2706878730735	40.21	0.61057	40.21	40.05	40.66	0					17	11	2	0	0	0	0.54492	1	13739	13739		24.991	2.2547	1	3231200			51279	13807	37269	37572	50087	50087					-0.013682966477972514
SSFGADKASVW	11	Unmodified	_SSFGADKASVW_					0	0	0			REV__nc|ENSG00000114742|Q8TAF3-5|WDR48	REV__nc|ENSG00000114742|Q8TAF3-5|WDR48	MULTI-MSMS	A375_MHC_IP_R1	1	577.6904907226562	2	577.77747	1153.54039	0.36977	0.00021364	0.33079	0.00019112	0.70055	0.00040476	577.7771998497817	44.848	1.0129	44.848	44.471	45.484	0					66	19	5	0	0	0	0.51633	1	15533	15533		29.841	7.1043	1	23831000	+		51280	17840	37270	37573	50088	50088					-0.03024052770342678
SSFGADKASVW	11	Unmodified	_SSFGADKASVW_					0	0	0			REV__nc|ENSG00000114742|Q8TAF3-5|WDR48	REV__nc|ENSG00000114742|Q8TAF3-5|WDR48	MULTI-MSMS	A375_MHC_IP_R2	2	577.6898803710938	2	577.77747	1153.54039	-0.02724	-1.5738E-05	-0.48681	-0.00028127	-0.51405	-0.00029701	577.7771692160284	44.072	1.1644	44.841	44.43	45.594	0.76909					46	22	3	0	0	0	0.51633	1	16296	16296		29.841	7.1043	1	26296000	+		51281	17840	37270	37573	50089	50089					-0.03024052770342678
SSFGFVRRW	9	Unmodified	_SSFGFVRRW_					0	0	0		nc|ENSG00000006756|P51689-2|ARSD;nc|ENSG00000006756|P51689-3|ARSD;ENSG00000006756|ENST00000381154|ARSD	nc|ENSG00000006756|P51689-2|ARSD	nc|ENSG00000006756|P51689-2|ARSD	MULTI-MSMS	A375_MHC_IP_R1	1	381.93603515625	3	381.201564	1140.58286	0.32674	0.00012455	-0.0094127	-3.5881E-06	0.31732	0.00012096	381.2015170736452	61.503	0.56084	61.503	61.227	61.788	0					23	10	3	0	0	0	0.077132	1	22188	22188		41.956	22.594	1	4461200			51282	930	37271	37574	50090	50090					0.018193871485664204
SSFGFVRRW	9	Unmodified	_SSFGFVRRW_					0	0	0		nc|ENSG00000006756|P51689-2|ARSD;nc|ENSG00000006756|P51689-3|ARSD;ENSG00000006756|ENST00000381154|ARSD	nc|ENSG00000006756|P51689-2|ARSD	nc|ENSG00000006756|P51689-2|ARSD	MULTI-MSMS	A375_MHC_IP_R2	2	381.60162353515625	3	381.201564	1140.58286	-0.32895	-0.0001254	0.29863	0.00011384	-0.030322	-1.1559E-05	381.2016149374949	60.603	0.66227	61.348	61.006	61.668	0.74503					29	12	4	0	0	0	0.034481	1	22942	22942		55.503	55.503	1	4198700			51283	930	37271	37574	50091	50091					0.018193871485664204
SSFIPPLYTD	10	Unmodified	_SSFIPPLYTD_					0	0	0			REV__ENSG00000187833|ENST00000409561|C2orf78	REV__ENSG00000187833|ENST00000409561|C2orf78	MULTI-SECPEP	A375_MHC_IP_R2	2	380.6051330566406	3	380.52549	1138.55464	-0.58524	-0.0002227	-1.2771	-0.00048597	-1.8623	-0.00070867	380.5248653855836	53.332	0.30563	54.083	53.944	54.249	0.75105					6	4	2	0	0	0	0.93405	1	20147	20147		5.0475	3.1411	1	1142200	+		51284	22052	37272	37575	50092	50092					-0.009094003420614172
SSFKPVQW	8	Unmodified	_SSFKPVQW_					0	0	0		ENSG00000165392|ENST00000298139|WRN	ENSG00000165392|ENST00000298139|WRN	ENSG00000165392|ENST00000298139|WRN	MULTI-SECPEP	A375_MHC_IP_R1	1	490.1556396484375	2	489.75581	977.497067	-0.29042	-0.00014224	0.28357	0.00013888	-0.0068528	-3.3562E-06	489.75594979952	60.275	0.45808	60.275	60.006	60.464	0					20	8	3	0	0	0	0.36486	1	21673	21673		71.134	35.089	1	3800200			51285	6947	37273	37576	50093	50093					0.007418022430442761
SSFKPVQW	8	Unmodified	_SSFKPVQW_					0	0	0		ENSG00000165392|ENST00000298139|WRN	ENSG00000165392|ENST00000298139|WRN	ENSG00000165392|ENST00000298139|WRN	MULTI-SECPEP	A375_MHC_IP_R2	2	490.15521240234375	2	489.75581	977.497067	-0.95579	-0.0004681	0.29871	0.00014629	-0.65708	-0.00032181	489.7559654467663	59.394	0.50438	60.141	59.845	60.349	0.74714					20	9	3	0	0	0	0.23546	1	22492	22492		85.272	51.17	1	3570600			51286	6947	37273	37576	50094	50094					0.007418022430442761
SSFPDPALY	9	Unmodified	_SSFPDPALY_					0	0	0		nc|ENSG00000102755|P17948-4|FLT1;nc|ENSG00000102755|P17948-2|FLT1;nc|ENSG00000102755|P17948-3|FLT1;ENSG00000102755|ENST00000282397|FLT1	nc|ENSG00000102755|P17948-4|FLT1	nc|ENSG00000102755|P17948-4|FLT1	MULTI-MSMS	A375_MHC_IP_R2	2	997.5299682617188	1	996.467289	995.460012	0.15893	0.00015837	-0.99983	-0.0009963	-0.84091	-0.00083794	996.4667915150359	95.601	0.51015	96.351	96.041	96.551	0.75045					17	9	3	0	0	0	0.55818	1	36263	36263		16.942	16.942	1	1839500			51287	2390	37274	37577	50095	50095					-0.0378991409338596
SSFPDPALY	9	Unmodified	_SSFPDPALY_					0	0	0		nc|ENSG00000102755|P17948-4|FLT1;nc|ENSG00000102755|P17948-2|FLT1;nc|ENSG00000102755|P17948-3|FLT1;ENSG00000102755|ENST00000282397|FLT1	nc|ENSG00000102755|P17948-4|FLT1	nc|ENSG00000102755|P17948-4|FLT1	MULTI-MATCH	A375_MHC_IP_R1	1		1	996.467289	995.460012	0.22657	0.00022577	0.018849	1.8782E-05	0.24542	0.00024455	996.467149632818	96.248	0.71272	96.248	95.917	96.63	0	-0.051605	0.00021	NaN	16.942	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2132400			51288	2390	37274	37577							-0.0378991409338596
SSFPDPALY	9	Unmodified	_SSFPDPALY_					0	0	0		nc|ENSG00000102755|P17948-4|FLT1;nc|ENSG00000102755|P17948-2|FLT1;nc|ENSG00000102755|P17948-3|FLT1;ENSG00000102755|ENST00000282397|FLT1	nc|ENSG00000102755|P17948-4|FLT1	nc|ENSG00000102755|P17948-4|FLT1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	996.467289	995.460012	0.15893	0.00015837	-0.99983	-0.0009963	-0.84091	-0.00083794	996.4667915150359	95.601	0.51015	96.351	96.041	96.551	0.75045	0.051605	-0.00080508	NaN	16.942	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1839500			51289	2390	37274	37577							-0.0378991409338596
SSFRSPLP	8	Unmodified	_SSFRSPLP_					0	0	0		ENST00000584446.5_1_18:18963479-19034595:+|nuORF	ENST00000584446.5_1_18:18963479-19034595:+|nuORF	ENST00000584446.5_1_18:18963479-19034595:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	445.9222106933594	2	445.74016	889.465767	-0.24987	-0.00011138	0.38995	0.00017382	0.14008	6.2438E-05	445.7404222876581	43.281	0.45629	44.054	43.775	44.231	0.7724					13	8	2	0	0	0	0.88903	1	16100	16100		24.021	19.691	1	1656500			51290	13705	37275	37578	50096	50096					0.016612292089462244
SSFSTTINY	9	Unmodified	_SSFSTTINY_					0	0	0		ENSG00000268606|ENST00000684311|MAGEA2;ENSG00000183305|ENST00000682532|MAGEA2B;chrX:152753623-152753788|269|13.78|0.02|9.76|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152753391-152753788|277|27.37|0.03|9.77|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152753391-152753542|267|20.52|0.02|9.74|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152752513-152753788|298|28.03|0.06|8.93|-|ENST00000620710|MAGEA2,MAGEA2;chrX:152752513-152753313|286|46.87|0.07|9.47|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751822-152752394|297|32.94|0.06|9.21|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751574-152753788|270|15.7|0.02|9.72|-|ENST00000611674|MAGEA2,MAGEA2;chrX:152751574-152752394|306|57.07|0.12|8.92|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152751574-152751725|302|47.9|0.07|9.45|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751428-152751509|319|92.49|0.18|9.0|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152714682-152716896|294|25.49|0.02|10.05|+|ENST00000370293|MAGEA2B,MAGEA2B;chrX:152716745-152716896|301|48.01|0.07|9.45|+|ENST00000447530|MAGEA2B,MAGEA2B;chrX:152714682-152715079|281|27.77|0.03|9.76|+|ENST00000447530|MAGEA2B,MAGEA2B	ENSG00000268606|ENST00000684311|MAGEA2	ENSG00000268606|ENST00000684311|MAGEA2	MULTI-SECPEP	A375_MHC_IP_R1	1	510.1634216308594	2	510.237647	1018.46074	-0.44719	-0.00022817	0.21942	0.00011196	-0.22777	-0.00011622	510.23751594897243	50.328	0.66512	50.328	49.947	50.613	0					32	12	4	0	0	0	0.65246	1	17904	17904		21.747	1.293	1	8162300			51291	522	37276	37579	50097	50097					-0.047751194443321765
SSFTDQRLF	9	Unmodified	_SSFTDQRLF_					0	0	0		ENST00000319264.3_1_9:12775113-12775212:+|nuORF	ENST00000319264.3_1_9:12775113-12775212:+|nuORF	ENST00000319264.3_1_9:12775113-12775212:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2083740234375	2	550.772188	1099.52982	-0.31446	-0.0001732	-0.43708	-0.00024073	-0.75155	-0.00041393	550.7715591176421	71.765	0.40259	71.765	71.615	72.018	0					11	7	2	0	0	0	0.70759	1	26082	26082		16.149	16.149	1	1710200			51292	10680	37277	37580	50098	50098					-0.015960354247681607
SSFVLLPALV	10	Unmodified	_SSFVLLPALV_					0	0	0		nc|ENSG00000173338|Q9Y2U2-2|KCNK7;nc|ENSG00000173338|Q9Y2U2-3|KCNK7;ENSG00000173338|ENST00000340313|KCNK7	nc|ENSG00000173338|Q9Y2U2-2|KCNK7	nc|ENSG00000173338|Q9Y2U2-2|KCNK7	MULTI-MSMS	A375_MHC_IP_R1	1	523.718505859375	2	523.318243	1044.62193	-0.18376	-9.6166E-05	0.53861	0.00028186	0.35484	0.0001857	523.3182887348866	112.35	0.46029	112.35	112.13	112.59	0					16	8	3	0	0	0	0.20882	1	41187	41187		48.346	30.199	1	3442500			51293	7791	37278	37581	50099	50099					0.1014067465955577
SSFVLLPALV	10	Unmodified	_SSFVLLPALV_					0	0	0		nc|ENSG00000173338|Q9Y2U2-2|KCNK7;nc|ENSG00000173338|Q9Y2U2-3|KCNK7;ENSG00000173338|ENST00000340313|KCNK7	nc|ENSG00000173338|Q9Y2U2-2|KCNK7	nc|ENSG00000173338|Q9Y2U2-2|KCNK7	MULTI-SECPEP	A375_MHC_IP_R2	2	523.7184448242188	2	523.318243	1044.62193	-0.36436	-0.00019068	-0.059658	-3.122E-05	-0.42402	-0.0002219	523.3181949450969	111.43	0.66914	112.17	111.8	112.47	0.73691					23	12	3	0	0	0	0.73628	1	42024	42024		28.487	20.577	1	2534000			51294	7791	37278	37581	50100	50100					0.1014067465955577
SSFVLPKL	8	Unmodified	_SSFVLPKL_					0	0	0		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	MULTI-SECPEP	A375_MHC_IP_R1	1	446.1706848144531	2	445.770929	889.527304	0.028386	1.2654E-05	0.31321	0.00013962	0.3416	0.00015227	445.77074311900157	89.044	0.71175	89.044	88.764	89.476	0					23	13	2	0	0	0	0.51146	1	32730	32730		43.858	22.112	1	2958600			51295	4434	37279	37582	50101	50101					0.07812160908224541
SSFVLPKL	8	Unmodified	_SSFVLPKL_					0	0	0		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	MULTI-SECPEP	A375_MHC_IP_R2	2	446.17059326171875	2	445.770929	889.527304	-0.30987	-0.00013813	0.32022	0.00014274	0.010348	4.6129E-06	445.77084300327573	88.168	0.91156	88.9	88.57	89.482	0.7318					25	17	2	0	0	0	0.64713	1	33539	33539		36.127	20.28	1	2749300			51296	4434	37279	37582	50102	50102					0.07812160908224541
SSGAFLSLKKV	11	Unmodified	_SSGAFLSLKKV_					0	0	0		nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	MULTI-SECPEP	A375_MHC_IP_R1	1	378.9398193359375	3	379.560646	1135.66011	0.11375	4.3175E-05	-0.59504	-0.00022585	-0.48129	-0.00018268	379.5603751501292	24.117	0.81205	24.117	23.635	24.447	0					20	15	2	0	0	0	0.88813	1	6645	6645		11.631	5.8479	1	9706300			51297	9407	37280	37583	50103	50103					0.09770560574224874
SSGDLTTNPDP	11	Unmodified	_SSGDLTTNPDP_					0	0	0		nc|ENSG00000170289|Q9NQW8-2|CNGB3;ENSG00000170289|ENST00000320005|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	MULTI-MSMS	A375_MHC_IP_R1	1	552.6454467773438	2	552.2462	1102.47785	-0.62077	-0.00034282	-0.6456	-0.00035653	-1.2664	-0.00069935	552.2456421299794	28.25	0.75804	28.25	27.987	28.745	0					27	14	3	0	0	0	0.66366	1	8690	8690		18.373	5.5005	1	8493400			51298	7489	37281	37584	50104	50104					-0.06929243629178927
SSGDLTTNPDP	11	Unmodified	_SSGDLTTNPDP_					0	0	0		nc|ENSG00000170289|Q9NQW8-2|CNGB3;ENSG00000170289|ENST00000320005|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	MULTI-MSMS	A375_MHC_IP_R2	2	552.6453857421875	2	552.2462	1102.47785	-0.76682	-0.00042348	-0.30905	-0.00017067	-1.0759	-0.00059415	552.2459008808082	27.648	0.60769	28.326	28.098	28.706	0.67857					24	11	3	0	0	0	0.66366	1	9480	9480		18.373	6.1324	1	6086100			51299	7489	37281	37584	50105	50105					-0.06929243629178927
SSGDTGHQFV	10	Unmodified	_SSGDTGHQFV_					0	0	0			REV__ENST00000366663.9_1_1:230974343-230974889:-|nuORF	REV__ENST00000366663.9_1_1:230974343-230974889:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	517.7050170898438	2	517.73052	1033.44649	-0.61869	-0.00032031	1.9118	0.00098982	1.2932	0.00066951	517.7311565388776	76.884	0.4101	76.884	76.673	77.083	0					10	7	2	0	0	0	0.6806	1	27990	27990		14.838	2.5976	1	943260	+		51300	23936	37282	37585	50106	50106					-0.06889771872624806
SSGGSCGGGG	10	Unmodified	_SSGGSCGGGG_					0	0	0		ENST00000403729.6_1_4:80992740-80994184:-|nuORF	ENST00000403729.6_1_4:80992740-80994184:-|nuORF	ENST00000403729.6_1_4:80992740-80994184:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	725.6561279296875	1	725.251893	724.244617	-0.91763	-0.00066551	3.7591	0.0027263	2.8415	0.0020608	725.2564021502523	146.39	0.14206	146.39	146.32	146.46	0					39	14	4	0	0	0	0.95069	1	56010	56010		0	0	1	470500			51301	11576	37283	37586	50107	50107					-0.12853578829810886
SSGGSCGGGG	10	Unmodified	_SSGGSCGGGG_					0	0	0		ENST00000403729.6_1_4:80992740-80994184:-|nuORF	ENST00000403729.6_1_4:80992740-80994184:-|nuORF	ENST00000403729.6_1_4:80992740-80994184:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	725.6549682617188	1	725.251893	724.244617	-0.60163	-0.00043633	3.171	0.0022998	2.5694	0.0018634	725.2562377376896	146.4	0.1376	146.42	146.35	146.49	0.019913					39	16	4	0	0	0	0.72747	1	57013	57013		0	0	1	481590			51302	11576	37283	37586	50108	50108					-0.12853578829810886
SSGIEWSNV	9	Unmodified	_SSGIEWSNV_					0	0	0		ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;DMXL2|p.T2022Hfs*16|1|0.5|ENSG00000104093|chr15:51481042-51481042|T/-|frameshift_variant;nc|ENSG00000104093|Q8TDJ6-2|DMXL2	ENSG00000104093|ENST00000560891|DMXL2	ENSG00000104093|ENST00000560891|DMXL2	MSMS	A375_MHC_IP_R2	2	489.5013122558594	2	489.729989	977.445425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.62	1	54.371	53.871	54.871	0.75105								0	0	0	0.15069	1	20240	20240		20.454	3.5113	1				51303	2485	37284	37587	50109	50109					-0.04419986241521201
SSGLHNIVT	9	Unmodified	_SSGLHNIVT_					0	0	0		nc|ENSG00000141441|Q9H706-3|GAREM1	nc|ENSG00000141441|Q9H706-3|GAREM1	nc|ENSG00000141441|Q9H706-3|GAREM1	MULTI-SECPEP	A375_MHC_IP_R1	1	464.64862060546875	2	464.248349	926.482145	-0.15745	-7.3094E-05	0.039344	1.8265E-05	-0.1181	-5.4829E-05	464.2483793161364	70.839	0.61365	70.839	70.494	71.108	0					18	11	2	0	0	0	0.67483	1	25755	25755		6.2058	0	1	1735900			51304	14645	37285	37588	50110	50110					0.015963103750550545
SSGLRFVL	8	Unmodified	_SSGLRFVL_					0	0	0		ENSG00000090971|ENST00000205194|NAT14	ENSG00000090971|ENST00000205194|NAT14	ENSG00000090971|ENST00000205194|NAT14	MULTI-SECPEP	A375_MHC_IP_R1	1	440.1582946777344	2	439.758352	877.502152	-0.081172	-3.5696E-05	-0.179	-7.8715E-05	-0.26017	-0.00011441	439.75819527030126	83.201	0.50613	83.201	82.874	83.38	0					19	9	3	0	0	0	0.1561	1	30415	30415		92.491	24.411	1	2520900			51305	1965	37286	37589	50111	50111					0.05850106105674513
SSGLRFVL	8	Unmodified	_SSGLRFVL_					0	0	0		ENSG00000090971|ENST00000205194|NAT14	ENSG00000090971|ENST00000205194|NAT14	ENSG00000090971|ENST00000205194|NAT14	MULTI-MSMS	A375_MHC_IP_R2	2	440.158203125	2	439.758352	877.502152	-0.3659	-0.00016091	0.35563	0.00015639	-0.010262	-4.5128E-06	439.75845785055765	82.122	0.50899	82.865	82.584	83.093	0.74293					15	9	2	0	0	0	0.052283	1	31209	31209		103.75	42.391	1	2495300			51306	1965	37286	37589	50112	50112					0.05850106105674513
SSGNVIAEFL	10	Unmodified	_SSGNVIAEFL_					0	0	0			REV__chr4:142028914-142069855|158|10.05|0.13|6.23|-|1|TE_info:L1PA5,L1PA5_dup3147,L1,LINE,donor,+,142069855,142072490|INPP4B,None|35	REV__chr4:142028914-142069855|158|10.05|0.13|6.23|-|1|TE_info:L1PA5,L1PA5_dup3147,L1,LINE,donor,+,142069855,142072490|INPP4B,None|35	MULTI-SECPEP	A375_MHC_IP_R1	1	518.1972045898438	2	518.769114	1035.52368	-0.54816	-0.00028437	-0.18494	-9.5941E-05	-0.7331	-0.00038031	518.7689982679929	59.163	0.76299	59.163	58.836	59.599	0					46	14	4	0	0	0	0.17241	1	21219	21219		53.833	0	1	44586000	+		51307	15751	37287	37590	50113	50113					0.007334463437018712
SSGPERIL	8	Unmodified	_SSGPERIL_					0	0	0		nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978|HNRNPK	nc|ENSG00000165119|P61978|HNRNPK	MULTI-SECPEP	A375_MHC_IP_R1	1	430.1375732421875	2	429.737617	857.460681	-0.38431	-0.00016515	0.18906	8.1244E-05	-0.19526	-8.3908E-05	429.73769714621767	36.515	1.9307	36.515	36.033	37.964	0					100	37	5	0	0	0	0.070663	1	12139	12139		131.27	27.519	1	264150000			51308	6916	37288	37591	50114	50114					0.026249253463333844
SSGPERIL	8	Unmodified	_SSGPERIL_					0	0	0		nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978|HNRNPK	nc|ENSG00000165119|P61978|HNRNPK	MULTI-SECPEP	A375_MHC_IP_R2	2	430.1374206542969	2	429.737617	857.460681	-0.41487	-0.00017828	0.042318	1.8186E-05	-0.37255	-0.0001601	429.73764068394047	35.595	1.7789	36.358	35.98	37.759	0.76338					98	34	5	0	0	0	0.070663	1	12842	12842		131.27	27.519	1	332710000			51309	6916	37288	37591	50115	50115					0.026249253463333844
SSGPGPRFL	9	Unmodified	_SSGPGPRFL_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	A375_MHC_IP_R1	1	459.6455993652344	2	459.245609	916.476666	0.10906	5.0084E-05	-0.58648	-0.00026934	-0.47742	-0.00021925	459.2454759494469	49.547	0.5584	49.547	49.235	49.793	0					29	10	4	0	0	0	0.06083	1	17519	17519		60.074	14.053	1	5376200			51310	2688	37289	37592	50116	50116					0.015086315832149921
SSGPGPRFL	9	Unmodified	_SSGPGPRFL_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	A375_MHC_IP_R2	2	459.6451721191406	2	459.245609	916.476666	-0.42097	-0.00019333	-0.99761	-0.00045815	-1.4186	-0.00065148	459.2452788732131	48.591	0.55907	49.348	49.08	49.639	0.75736					31	10	4	0	0	0	0.06083	2	18244	18216;18244		60.074	25.971	1	4776600			51311	2688	37289	37592	50117;50118	50118					0.015086315832149921
SSGPHNLTY	9	Unmodified	_SSGPHNLTY_					0	0	0		nc|ENSG00000112078|Q7Z5Y7-2|KCTD20;ENSG00000112078|ENST00000373731|KCTD20	nc|ENSG00000112078|Q7Z5Y7-2|KCTD20	nc|ENSG00000112078|Q7Z5Y7-2|KCTD20	MULTI-SECPEP	A375_MHC_IP_R1	1	487.97698974609375	2	488.230156	974.445759	-0.3543	-0.00017298	-1.8536	-0.00090501	-2.2079	-0.001078	488.2296580508895	27.362	0.4561	27.362	27.128	27.584	0					13	8	2	0	0	0	0.14572	1	8233	8233		62.573	5.1013	1	1668100			51312	3046	37290	37593	50119	50119					-0.042485665216759116
SSGPLGPLH	9	Unmodified	_SSGPLGPLH_					0	0	0			REV__ENST00000421085.6_1_X:10126338-10126527:+|nuORF	REV__ENST00000421085.6_1_X:10126338-10126527:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	432.6401062011719	2	432.732335	863.450116	-0.17627	-7.6279E-05	0.0028215	1.221E-06	-0.17345	-7.5059E-05	432.73247039252755	42.616	0.50712	43.388	43.167	43.674	0.7724					14	9	2	0	0	0	0.40079	1	15916	15916		24.674	0.65332	1	1065600	+		51313	24583	37291	37594	50120	50120					0.01292942691884491
SSGPLGPLH	9	Unmodified	_SSGPLGPLH_					0	0	0			REV__ENST00000421085.6_1_X:10126338-10126527:+|nuORF	REV__ENST00000421085.6_1_X:10126338-10126527:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	432.732335	863.450116	-0.083585	-3.617E-05	0.24147	0.00010449	0.15789	6.8323E-05	432.73227556118667	43.527	0.45663	43.527	43.3	43.757	0	0.069452	0.0001335	NaN	24.674	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	892240	+		51314	24583	37291	37594							0.01292942691884491
SSGPLGPLH	9	Unmodified	_SSGPLGPLH_					0	0	0			REV__ENST00000421085.6_1_X:10126338-10126527:+|nuORF	REV__ENST00000421085.6_1_X:10126338-10126527:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	432.732335	863.450116	-0.17627	-7.6279E-05	0.0028215	1.221E-06	-0.17345	-7.5059E-05	432.73247039252755	42.616	0.50712	43.388	43.167	43.674	0.7724	-0.069452	-7.3043E-05	NaN	24.674	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1065600	+		51315	24583	37291	37594							0.01292942691884491
SSGPQRLV	8	Unmodified	_SSGPQRLV_					0	0	0		ENSG00000244045|ENST00000292114|TMEM199;ENST00000579762.1_1_17:26684693-26685353:+|nuORF;ENST00000581386.5_1_17:26684693-26686548:+|nuORF;ENST00000483505.6_1_17:26684735-26687632:+|nuORF	ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	MULTI-MSMS	A375_MHC_IP_R1	1	422.6377868652344	2	422.237784	842.461016	-0.21485	-9.0716E-05	0.21079	8.9003E-05	-0.0040589	-1.7138E-06	422.23780686595506	27.002	0.75443	27.002	26.728	27.482	0					30	14	3	0	0	0	0.059747	1	8100	8100		133.7	28.903	1	21988000			51316	9819	37292	37595	50121	50121					0.033483450661947245
SSGPQRLV	8	Unmodified	_SSGPQRLV_					0	0	0		ENSG00000244045|ENST00000292114|TMEM199;ENST00000579762.1_1_17:26684693-26685353:+|nuORF;ENST00000581386.5_1_17:26684693-26686548:+|nuORF;ENST00000483505.6_1_17:26684735-26687632:+|nuORF	ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	MULTI-SECPEP	A375_MHC_IP_R2	2	422.6375427246094	2	422.237784	842.461016	-0.51774	-0.00021861	0.29941	0.00012642	-0.21833	-9.2186E-05	422.23786042175936	26.323	0.60944	26.983	26.754	27.363	0.65992					16	11	2	0	0	0	0.22702	1	8894	8894		85.357	24.967	1	5972200			51317	9819	37292	37595	50122	50122					0.033483450661947245
SSGSCVMNQY	10	Unmodified	_SSGSCVMNQY_					0	0	0		ADAMDEC1|p.P370S|1|0.45|ENSG00000134028|chr8:24400266-24400266|C/T|missense_variant	ADAMDEC1|p.P370S|1|0.45|ENSG00000134028|chr8:24400266-24400266|C/T|missense_variant	ADAMDEC1|p.P370S|1|0.45|ENSG00000134028|chr8:24400266-24400266|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	538.2019653320312	2	538.212792	1074.41103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.401	1	53.401	52.901	53.901	0								0	0	0	0.15105	1	19036	19036		15.847	3.3156	1				51318	52	37293	37596	50123	50123					-0.12319893716289698
SSGSSGGCD	9	Unmodified	_SSGSSGGCD_					0	0	0			REV__ENSG00000165655|ENST00000372524|ZNF503	REV__ENSG00000165655|ENST00000372524|ZNF503	MULTI-MSMS	A375_MHC_IP_R1	1	756.6476440429688	1	756.246473	755.239197	-0.69697	-0.00052708	-0.37036	-0.00028009	-1.0673	-0.00080717	756.2482071726413	15.807	2.4016	15.807	14.724	17.125	0					631	351	2	0	0	0	0.77827	1	3596	3596		0	0	1	602650			51319	20606	37294	37597	50124	50124					-0.14821302412303794
SSGSSGGCD	9	Unmodified	_SSGSSGGCD_					0	0	0			REV__ENSG00000165655|ENST00000372524|ZNF503	REV__ENSG00000165655|ENST00000372524|ZNF503	MULTI-SECPEP	A375_MHC_IP_R1	1	755.6467895507812	1	756.246473	755.239197	-0.69697	-0.00052708	-0.37036	-0.00028009	-1.0673	-0.00080717	756.2482071726413	15.807	2.4016	15.807	14.724	17.125	0					631	351	2	0	0	0	0.81896	1	3629	3629		0	0	1	602650			51320	20606	37294	37597	50125	50125					-0.14821302412303794
SSGSSGGCD	9	Unmodified	_SSGSSGGCD_					0	0	0			REV__ENSG00000165655|ENST00000372524|ZNF503	REV__ENSG00000165655|ENST00000372524|ZNF503	MULTI-MSMS	A375_MHC_IP_R2	2	756.6470947265625	1	756.246473	755.239197	-1.1533	-0.00087216	-0.23269	-0.00017597	-1.386	-0.0010481	756.2483071598663	15.756	2.5179	16.343	14.384	16.901	0.58774					622	369	2	0	0	0	0.77827	2	4632	4632;4834		0	0	1	708550			51321	20606	37294	37597	50126;50127	50126					-0.14821302412303794
SSGVSHSSSV	10	Unmodified	_SSGVSHSSSV_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	A375_MHC_IP_R1	1	467.6173400878906	2	467.217246	932.419939	-0.0070734	-3.3048E-06	0.091335	4.2673E-05	0.084262	3.9369E-05	467.2176089329556	45.54	0.80914	45.54	45.081	45.89	0					22	15	2	0	0	0	0.48529	1	15907	15907		29.082	9.8246	1	2635700			51322	6414	37295	37598	50128	50128					-0.048974607639365786
SSGVSHSSSV	10	Unmodified	_SSGVSHSSSV_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	467.217246	932.419939	-0.0070734	-3.3048E-06	0.091335	4.2673E-05	0.084262	3.9369E-05	467.2176089329556	45.54	0.80914	45.54	45.081	45.89	0	0.058749	-0.00013089	NaN	29.082	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2635700			51323	6414	37295	37598							-0.048974607639365786
SSGVSHSSSV	10	Unmodified	_SSGVSHSSSV_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	467.217246	932.419939	-0.72598	-0.00033919	0.31648	0.00014786	-0.4095	-0.00019132	467.21758540456597	44.653	0.66265	45.422	45.035	45.698	0.7691	-0.058749	7.9495E-05	NaN	29.082	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2347600			51324	6414	37295	37598							-0.048974607639365786
SSGWKEEEV	9	Unmodified	_SSGWKEEEV_					0	0	0		ENST00000475698.1_1_1:201982922-201984448:+|nuORF;nc|ENSG00000163435|P78545-2|ELF3;ENSG00000163435|ENST00000367284|ELF3	ENST00000475698.1_1_1:201982922-201984448:+|nuORF	ENST00000475698.1_1_1:201982922-201984448:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	525.68798828125	2	525.740554	1049.46655	-0.46916	-0.00024666	-0.79444	-0.00041767	-1.2636	-0.00066432	526.2405143903403	76.851	0.65823	77.593	77.149	77.807	0.74293					15	12	2	0	0	0	0.67483	1	29158	29158		14.838	0.93222	1	1866200			51325	6662	37296	37599	50129	50129					-0.05620020932656189
SSGYYIFSL	9	Unmodified	_SSGYYIFSL_					0	0	0		ENST00000267843.8_1_15:49716502-49716595:+|nuORF	ENST00000267843.8_1_15:49716502-49716595:+|nuORF	ENST00000267843.8_1_15:49716502-49716595:+|nuORF	MSMS	A375_MHC_IP_R2	2	518.6947021484375	2	518.752933	1035.49131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.636	1	89.368	88.868	89.868	0.7318								0	0	0	0.1535	1	33731	33731		15.847	1.0089	1				51326	10358	37297	37600	50130	50130					-0.025013410592691798
SSHDNFQSL	9	Unmodified	_SSHDNFQSL_					0	0	0		nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6	nc|ENSG00000158987|Q8TEU7-5|RAPGEF6	nc|ENSG00000158987|Q8TEU7-5|RAPGEF6	MULTI-SECPEP	A375_MHC_IP_R1	1	518.1664428710938	2	517.73052	1033.44649	-0.61869	-0.00032031	1.9118	0.00098982	1.2932	0.00066951	517.7311565388776	76.884	0.4101	76.884	76.673	77.083	0					10	7	2	0	0	0	0.65246	1	28023	28023		10.824	2.9138	1	943260			51327	6342	37298	37601	50131	50131					-0.06889771872624806
SSHGPDLPSPF	11	Unmodified	_SSHGPDLPSPF_					0	0	0			REV__ENSG00000149506|ENST00000278853|ZP1	REV__ENSG00000149506|ENST00000278853|ZP1	MSMS	A375_MHC_IP_R1	1	570.687744140625	2	570.769645	1139.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.704	1	43.704	43.204	44.204	0								0	0	0	0.15541	1	15210	15210		17.113	0	1		+		51328	19685	37299	37602	50132	50132					-0.03944339287386356
SSHNNGTT	8	Unmodified	_SSHNNGTT_					0	0	0			REV__nc|ENSG00000285708|Q9H334-6|FOXP1	REV__nc|ENSG00000285708|Q9H334-6|FOXP1	MSMS	A375_MHC_IP_R1	1	409.1392822265625	2	409.175381	816.336209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.78	1	142.78	142.28	143.28	0								0	0	0	0.16876	1	54783	54783		2.5775	1.8871	1		+		51329	17845	37300	37603	50133	50133					-0.07930572141003722
SSHPKSATVY	10	Unmodified	_SSHPKSATVY_					0	0	0		GPR50|p.G430S|1|0.62|ENSG00000102195|chrX:151180871-151180871|G/A|missense_variant	GPR50|p.G430S|1|0.62|ENSG00000102195|chrX:151180871-151180871|G/A|missense_variant	GPR50|p.G430S|1|0.62|ENSG00000102195|chrX:151180871-151180871|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	539.12841796875	2	538.772188	1075.52982	-1.3884	-0.00074805	-0.56071	-0.00030209	-1.9491	-0.0010501	538.7718053010057	52.985	0.5582	53.736	53.335	53.893	0.75105					17	10	2	0	0	0	0.91909	1	19836	19836		13.906	9.5768	1	2234400			51330	14068	37301	37604	50134	50134					-0.004920354247587966
SSHPKSATVY	10	Unmodified	_SSHPKSATVY_					0	0	0		GPR50|p.G430S|1|0.62|ENSG00000102195|chrX:151180871-151180871|G/A|missense_variant	GPR50|p.G430S|1|0.62|ENSG00000102195|chrX:151180871-151180871|G/A|missense_variant	GPR50|p.G430S|1|0.62|ENSG00000102195|chrX:151180871-151180871|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	538.772188	1075.52982	-0.51899	-0.00027962	0.16375	8.8225E-05	-0.35524	-0.00019139	538.7723389356255	53.858	0.55911	53.858	53.453	54.013	0	0.061021	0.00043533	NaN	13.906	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1824200			51331	14068	37301	37604							-0.004920354247587966
SSILEWVTV	9	Unmodified	_SSILEWVTV_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	A375_MHC_IP_R1	1	517.6821899414062	2	517.281857	1032.54916	-0.63444	-0.00032818	0.41058	0.00021239	-0.22386	-0.0001158	517.2820977799784	65.119	2.3402	65.119	64.495	66.836	0					107	45	3	0	0	0	0.32899	1	23673	23673		28.487	3.0875	1	11976000	+		51332	21494	37302	37605	50135	50135					0.034189208661246084
SSILKQLTRQQ	11	Unmodified	_SSILKQLTRQQ_					0	0	0			REV__ENST00000464620.1_1_1:3388185-3390209:+|nuORF	REV__ENST00000464620.1_1_1:3388185-3390209:+|nuORF	MSMS	A375_MHC_IP_R2	2	434.6504821777344	3	434.589376	1300.7463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.067	1	55.818	55.318	56.318	0.75075								0	0	0	0.16112	1	20795	20795		12.856	3.6122	1		+		51333	18563	37303	37606	50136	50136					0.10795520408919401
SSILNKETDY	10	Unmodified	_SSILNKETDY_					0	0	0			REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	585.6878662109375	2	585.287868	1168.56118	-0.39092	-0.0002288	2.5767	0.0015081	2.1857	0.0012793	585.2878669638336	87.309	0.70678	88.042	87.712	88.419	0.733					17	13	2	0	0	0	0.92227	1	33216	33216		13.042	2.2185	1	3931500	+		51334	28270	37304	37607	50137	50137					-0.01635507181322282
SSIRITLKI	9	Unmodified	_SSIRITLKI_					0	0	0			REV__RSF1|p.R742W|1|0.06|ENSG00000048649|chr11:77701005-77701005|G/A|missense_variant	REV__RSF1|p.R742W|1|0.06|ENSG00000048649|chr11:77701005-77701005|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	516.9281005859375	2	515.834591	1029.65463	-1.031	-0.00053184	-0.24711	-0.00012747	-1.2781	-0.00065931	515.8344387025985	57.911	0.70844	58.66	58.427	59.135	0.74894					26	13	3	0	0	0	0.70886	1	21896	21896		6.2058	6.2058	1	7343400	+		51335	16375	37305	37608	50138	50138					0.140988817824109
SSKRRRRHRLR	11	Unmodified	_SSKRRRRHRLR_					0	0	0		ENST00000492155.5_1_10:13749216-13749624:-|nuORF	ENST00000492155.5_1_10:13749216-13749624:-|nuORF	ENST00000492155.5_1_10:13749216-13749624:-|nuORF	MSMS	A375_MHC_IP_R1	1	754.1980590820312	2	754.46689	1506.91923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.24	1	146.24	145.74	146.74	0								0	0	0	0.1636	1	55960	55960		0	0	1				51336	12668	37306	37609	50139	50139					0.18604369099375617
SSKVKRKDA	9	Unmodified	_SSKVKRKDA_					0	0	0		nc|ENSG00000119231|Q96HI0-2|SENP5;ENSG00000119231|ENST00000323460|SENP5	nc|ENSG00000119231|Q96HI0-2|SENP5	nc|ENSG00000119231|Q96HI0-2|SENP5	MULTI-MSMS	A375_MHC_IP_R2	2	509.7252502441406	2	509.803823	1017.59309	-0.57338	-0.00029231	-0.2187	-0.00011149	-0.79208	-0.00040381	509.80366545678345	115.98	0.91335	116.67	116.04	116.95	0.68999					25	17	2	0	0	0	0.58047	1	43783	43783		15.847	15.847	1	5324400			51337	3577	37307	37610	50140	50140					0.08499950083125896
SSLAFHKAS	9	Unmodified	_SSLAFHKAS_					0	0	0		nc|ENSG00000112339|Q9Y450-2|HBS1L	nc|ENSG00000112339|Q9Y450-2|HBS1L	nc|ENSG00000112339|Q9Y450-2|HBS1L	MULTI-MSMS	A375_MHC_IP_R1	1	474.6917724609375	2	474.250892	946.48723	-0.38823	-0.00018412	3.1798	0.001508	2.7916	0.0013239	474.2530561736969	56.692	0.45793	56.692	56.498	56.956	0					13	8	2	0	0	0	0.27064	1	20405	20405		32.786	7.3864	1	891050			51338	14550	37308	37611	50141	50141					0.011846142376612079
SSLALARSA	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SSLALARSA_					1	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;ENST00000563441.5_1_15:75651254-75660924:-|nuORF;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;MAN2C1|p.F557L|1|0.16|ENSG00000140400|chr15:75360125-75360125|G/T|missense_variant;ENST00000564785.5_1_15:75652318-75652519:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-MSMS	A375_MHC_IP_R1	1	459.6558837890625	2	459.256174	916.497795	-0.33337	-0.0001531	0.13009	5.9744E-05	-0.20328	-9.3359E-05	459.25617970285543	47.133	0.66727	47.133	46.799	47.467	0					27	12	3	0	0	0	0.04447	1	16554	16554		66.457	24.617	1	6463300			51339	5152	37309	37612	50142	50142					0.03620596892085359
SSLALARSA	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SSLALARSA_					1	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;ENST00000563441.5_1_15:75651254-75660924:-|nuORF;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;MAN2C1|p.F557L|1|0.16|ENSG00000140400|chr15:75360125-75360125|G/T|missense_variant;ENST00000564785.5_1_15:75652318-75652519:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-MSMS	A375_MHC_IP_R2	2	459.6560363769531	2	459.256174	916.497795	-0.26842	-0.00012327	0.042573	1.9552E-05	-0.22584	-0.00010372	459.25616947105533	46.367	0.71152	47.133	46.755	47.466	0.76519					21	13	2	0	0	0	0.04447	1	17319	17319		66.457	14.827	1	5498500			51340	5152	37309	37612	50143	50143					0.03620596892085359
SSLDEKSDKQY	11	Unmodified	_SSLDEKSDKQY_					0	0	0		ENSG00000093167|ENST00000336686|LRRFIP2	ENSG00000093167|ENST00000336686|LRRFIP2	ENSG00000093167|ENST00000336686|LRRFIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	434.2737731933594	3	433.873618	1298.59903	-0.013943	-6.0496E-06	0.65213	0.00028294	0.63818	0.00027689	433.87371721691375	35.891	0.35659	35.891	35.676	36.033	0					10	6	2	0	0	0	0.99681	1	11996	11996		4.4062	0	1	2084200			51341	2021	37310	37613	50144	50144					-0.038330409865238835
SSLFLGQTW	9	Unmodified	_SSLFLGQTW_					0	0	0		ENST00000555122.1_1_14:105406018-105406159:-|nuORF	ENST00000555122.1_1_14:105406018-105406159:-|nuORF	ENST00000555122.1_1_14:105406018-105406159:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	518.9710083007812	2	519.766374	1037.5182	-0.58653	-0.00030486	-0.68499	-0.00035604	-1.2715	-0.00066089	519.7660779106855	42.929	0.30312	43.701	43.523	43.826	0.7724					9	5	2	0	0	0	0.71541	1	15958	15958		11.64	0	1	1334800			51342	13427	37311	37614	50145	50145					0.0009376755190260155
SSLHVTTSPA	10	Unmodified	_SSLHVTTSPA_					0	0	0		ENST00000511074.1_1_5:177305805-177309842:+|nuORF;nc|ENSG00000051596|Q96J01-2|THOC3	ENST00000511074.1_1_5:177305805-177309842:+|nuORF	ENST00000511074.1_1_5:177305805-177309842:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	500.658935546875	2	500.258914	998.503274	-0.53184	-0.00026606	-0.35435	-0.00017727	-0.88619	-0.00044332	500.2588304367371	25.638	0.40578	25.638	25.511	25.917	0					13	7	2	0	0	0	0.6774	1	7559	7559		27.629	0	1	3284700			51343	12903	37312	37615	50146	50146					0.0039627568389732915
SSLKVLKKY	9	Unmodified	_SSLKVLKKY_					0	0	0		ENST00000574992.5_1_17:79871648-79872373:-|nuORF;ENST00000576156.1_1_17:79871830-79872373:-|nuORF;nc|ENSG00000187531|Q9NRC8-3|SIRT7;ENSG00000187531|ENST00000328666|SIRT7	ENST00000574992.5_1_17:79871648-79872373:-|nuORF	ENST00000574992.5_1_17:79871648-79872373:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	355.94873046875	3	355.893737	1064.65938	-0.28566	-0.00010166	0.58731	0.00020902	0.30165	0.00010735	355.893762218522	23.701	0.20315	23.701	23.584	23.787	0					7	3	3	0	0	0	0.70411	1	6552	6552		6.6304	0.84694	1	1999800			51344	8831	37313	37616	50147	50147					0.12963765925201187
SSLPDNRAY	9	Unmodified	_SSLPDNRAY_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-SECPEP	A375_MHC_IP_R1	1	512.1483154296875	2	511.748713	1021.48287	-0.67041	-0.00034308	-0.23251	-0.00011899	-0.90292	-0.00046207	511.74866743224084	27.975	0.65448	27.975	27.786	28.44	0					28	12	3	0	0	0	0.13244	1	8561	8561		67.838	27.599	1	8868000			51345	14737	37314	37617	50148	50148					-0.027008949759192546
SSLPDNRAY	9	Unmodified	_SSLPDNRAY_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1482543945312	2	511.748713	1021.48287	-0.68142	-0.00034871	-0.33724	-0.00017258	-1.0187	-0.00052129	511.74859525258086	27.457	0.70953	28.136	27.895	28.604	0.67857					23	13	3	0	0	0	0.090157	1	9358	9358		76.825	25.97	1	7957300			51346	14737	37314	37617	50149	50149					-0.027008949759192546
SSLQLYRQF	9	Unmodified	_SSLQLYRQF_					0	0	0		nc|ENSG00000011523|Q76N32-2|CEP68;ENSG00000011523|ENST00000377990|CEP68	nc|ENSG00000011523|Q76N32-2|CEP68	nc|ENSG00000011523|Q76N32-2|CEP68	MULTI-SECPEP	A375_MHC_IP_R1	1	571.1821899414062	2	571.303655	1140.59276	0.0046039	2.6302E-06	0.6103	0.00034867	0.6149	0.0003513	571.3040541966218	69.081	0.45632	69.081	68.819	69.275	0					11	8	2	0	0	0	0.46045	1	25070	25070		22.736	5.6234	1	1369500			51347	1006	37315	37618	50150	50150					0.028085303632678915
SSLQLYRQF	9	Unmodified	_SSLQLYRQF_					0	0	0		nc|ENSG00000011523|Q76N32-2|CEP68;ENSG00000011523|ENST00000377990|CEP68	nc|ENSG00000011523|Q76N32-2|CEP68	nc|ENSG00000011523|Q76N32-2|CEP68	MULTI-SECPEP	A375_MHC_IP_R2	2	571.703857421875	2	571.303655	1140.59276	-0.17675	-0.00010098	-0.15369	-8.7804E-05	-0.33044	-0.00018878	571.303886447079	68.293	0.40536	69.028	68.816	69.221	0.73512					12	7	2	0	0	0	0.65246	1	25915	25915		10.824	0.75	1	1324400			51348	1006	37315	37618	50151	50151					0.028085303632678915
SSLRLLLV	8	Unmodified	_SSLRLLLV_					0	0	0			REV__ENST00000491911.5_1_9:140506544-140506610:+|nuORF	REV__ENST00000491911.5_1_9:140506544-140506610:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	451.19696044921875	2	450.797478	899.580402	-0.41707	-0.00018801	-0.15005	-6.7642E-05	-0.56712	-0.00025566	450.7973638990874	90.868	0.40633	90.868	90.641	91.048	0					15	7	3	0	0	0	0.38299	1	33395	33395		53.833	13.883	1	1964400	+		51349	25403	37316	37619	50152	50152					0.12659538690900263
SSLRLLLV	8	Unmodified	_SSLRLLLV_					0	0	0			REV__ENST00000491911.5_1_9:140506544-140506610:+|nuORF	REV__ENST00000491911.5_1_9:140506544-140506610:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	451.19744873046875	2	450.797478	899.580402	-0.19356	-8.7257E-05	-0.2891	-0.00013033	-0.48266	-0.00021758	450.79728474407017	89.766	0.46213	90.498	90.186	90.648	0.7318					14	8	2	0	0	0	0.47739	1	34171	34171		49.933	7.8384	1	1478100	+		51350	25403	37316	37619	50153	50153					0.12659538690900263
SSLRLLLV	8	Unmodified	_SSLRLLLV_					0	0	0			REV__ENST00000491911.5_1_9:140506544-140506610:+|nuORF	REV__ENST00000491911.5_1_9:140506544-140506610:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	450.797478	899.580402	-0.41707	-0.00018801	-0.15005	-6.7642E-05	-0.56712	-0.00025566	450.7973638990874	90.868	0.40633	90.868	90.641	91.048	0	0.18526	5.7203E-05	NaN	53.833	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1964400	+		51351	25403	37316	37619							0.12659538690900263
SSLRLLLV	8	Unmodified	_SSLRLLLV_					0	0	0			REV__ENST00000491911.5_1_9:140506544-140506610:+|nuORF	REV__ENST00000491911.5_1_9:140506544-140506610:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	450.797478	899.580402	-0.19356	-8.7257E-05	-0.2891	-0.00013033	-0.48266	-0.00021758	450.79728474407017	89.766	0.46213	90.498	90.186	90.648	0.7318	-0.18526	-6.8165E-05	NaN	53.833	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1478100	+		51352	25403	37316	37619							0.12659538690900263
SSLTVRGRSW	10	Unmodified	_SSLTVRGRSW_					0	0	0		ENST00000422053.3_1_20:368928-376885:+|nuORF	ENST00000422053.3_1_20:368928-376885:+|nuORF	ENST00000422053.3_1_20:368928-376885:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	575.212158203125	2	574.812179	1147.60981	-0.15064	-8.6588E-05	0.54399	0.00031269	0.39336	0.00022611	574.8121704166899	31.624	0.66112	31.624	31.414	32.075	0					19	12	2	0	0	0	0.54492	1	10135	10135		24.991	12.75	1	5876900			51353	11744	37317	37620	50154	50154					0.04190450969099402
SSLTVRGRSW	10	Unmodified	_SSLTVRGRSW_					0	0	0		ENST00000422053.3_1_20:368928-376885:+|nuORF	ENST00000422053.3_1_20:368928-376885:+|nuORF	ENST00000422053.3_1_20:368928-376885:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	383.9439697265625	3	383.543878	1147.60981	0.35899	0.00013769	0.030419	1.1667E-05	0.38941	0.00014936	383.54387349819723	31.591	0.50655	31.591	31.363	31.87	0					15	9	2	0	0	0	0.57412	1	10116	10116		22.109	7.1517	1	6268300			51354	11744	37317	37620	50155	50155					0.04190450969099402
SSLTVRGRSW	10	Unmodified	_SSLTVRGRSW_					0	0	0		ENST00000422053.3_1_20:368928-376885:+|nuORF	ENST00000422053.3_1_20:368928-376885:+|nuORF	ENST00000422053.3_1_20:368928-376885:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	575.211669921875	2	574.812179	1147.60981	-0.23319	-0.00013404	-0.081908	-4.7082E-05	-0.3151	-0.00018112	574.8120434636032	30.723	0.45319	31.442	31.216	31.669	0.71857					15	8	2	0	0	0	0.70334	1	10832	10832		10.8	3.1906	1	6403100			51355	11744	37317	37620	50156	50156					0.04190450969099402
SSLTVRGRSW	10	Unmodified	_SSLTVRGRSW_					0	0	0		ENST00000422053.3_1_20:368928-376885:+|nuORF	ENST00000422053.3_1_20:368928-376885:+|nuORF	ENST00000422053.3_1_20:368928-376885:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	574.812179	1147.60981	-0.23319	-0.00013404	-0.081908	-4.7082E-05	-0.3151	-0.00018112	574.8120434636032	30.723	0.45319	31.442	31.216	31.669	0.71857	-0.091119	-0.00017531	NaN	24.991	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6403100			51356	11744	37317	37620							0.04190450969099402
SSLVHPEL	8	Unmodified	_SSLVHPEL_					0	0	0		ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	MULTI-MSMS	A375_MHC_IP_R2	2	441.6397399902344	2	441.239993	880.465432	-0.63083	-0.00027835	0.14362	6.3372E-05	-0.48721	-0.00021498	441.24015475425597	49.559	0.71069	50.316	49.995	50.706	0.75736					28	13	3	0	0	0	0.17015	2	18631	18631;18667		70.716	26.309	1	3821500			51357	9294	37318	37621	50157;50158	50157					0.020418094890942484
SSMAFWYFAFY	11	Unmodified	_SSMAFWYFAFY_					0	0	0			REV__GPR83|p.H331Y|1|0.32|ENSG00000123901|chr11:94380430-94380430|G/A|missense_variant	REV__GPR83|p.H331Y|1|0.32|ENSG00000123901|chr11:94380430-94380430|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	474.6078796386719	3	473.874125	1418.60055	-0.83147	-0.00039401	-1.1075	-0.00052483	-1.939	-0.00091884	473.8735900655481	19.173	0.3023	19.776	19.633	19.935	0.60308					11	5	3	0	0	0	0.99999	1	5917	5917		1.4551	1.2958	1	3171900	+		51358	26704	37319	37622	50159	50159					-0.09201078431442511
SSMLVKNFG	9	Unmodified	_SSMLVKNFG_					0	0	0			REV__ENST00000409028.8_1_2:101635554-101635701:+|nuORF	REV__ENST00000409028.8_1_2:101635554-101635701:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	490.9801025390625	2	491.754953	981.495352	-0.50915	-0.00025038	0.46938	0.00023082	-0.039777	-1.956E-05	491.7550272534001	19.325	0.13068	19.325	19.238	19.368	0					4	2	2	0	0	0	0.76187	1	4657	4657		3.9444	0	1	5580800	+		51359	24460	37320	37623	50160	50160					0.0038642516278741823
SSNCTEPFPN	10	Unmodified	_SSNCTEPFPN_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MSMS	A375_MHC_IP_R2	2	548.1348266601562	2	548.224214	1094.43387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.776	1	53.527	53.027	54.027	0.75105								0	0	0	0.14925	1	19900	19900		19.257	0	1				51360	2444	37321	37624	50161	50161					-0.10956551327171837
SSNKFSKCDQY	11	Unmodified	_SSNKFSKCDQY_					0	0	0		FLG2|p.E412K|3|0.19|ENSG00000143520|chr1:152356552-152356552|C/T|missense_variant	FLG2|p.E412K|3|0.19|ENSG00000143520|chr1:152356552-152356552|C/T|missense_variant	FLG2|p.E412K|3|0.19|ENSG00000143520|chr1:152356552-152356552|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	653.7666625976562	2	653.790252	1305.56595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.234	1	25.234	24.734	25.734	0								0	0	0	0.16124	1	7327	7327		12.241	1.4411	1				51361	14006	37322	37625	50162	50162					-0.07460946310197869
SSNNSSSS	8	Unmodified	_SSNNSSSS_					0	0	0		ENST00000524717.5_1_11:95825156-95825615:-|nuORF	REV__ENST00000524717.5_1_11:95825156-95825615:-|nuORF	REV__ENST00000524717.5_1_11:95825156-95825615:-|nuORF	MSMS	A375_MHC_IP_R1	1	385.13287353515625	2	385.151571	768.28859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.316	1	65.316	64.816	65.816	0								0	0	0	0.16876	1	23645	23645		2.5775	0	1				51362	13059	37323	37626	50163	50163					-0.10482271131832022
SSNPPFMSAS	10	Unmodified	_SSNPPFMSAS_					0	0	0			REV__ENST00000481651.1_1_7:143510290-143510464:-|nuORF	REV__ENST00000481651.1_1_7:143510290-143510464:-|nuORF	MSMS	A375_MHC_IP_R2	2	512.6649780273438	2	512.723849	1023.43315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.361	1	82.104	81.604	82.604	0.74293								0	0	0	0.14862	1	30895	30895		20.454	2.3073	1		+		51363	25263	37324	37627	50164	50164					-0.07763345976206892
SSNTEFKFL	9	Unmodified	_SSNTEFKFL_					0	0	0		nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3;ENSG00000262209|ENST00000576222|PCDHGB3	nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3	nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3	MULTI-MSMS	A375_MHC_IP_R1	1	536.6948852539062	2	536.769114	1071.52368	-0.70293	-0.00037731	-0.0254	-1.3634E-05	-0.72833	-0.00039094	536.769339779651	74.551	0.76149	74.551	74.146	74.908	0					23	14	2	0	0	0	0.67332	1	27083	27083		9.3831	0	1	3031600			51364	9943	37325	37628	50165	50165					-0.00922553656278069
SSNVSFFAE	9	Unmodified	_SSNVSFFAE_					0	0	0			REV__ENSG00000253729|ENST00000314191|PRKDC	REV__ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	A375_MHC_IP_R1	1	494.624267578125	2	494.224539	986.434526	0.09856	4.8711E-05	-0.39234	-0.0001939	-0.29377	-0.00014519	494.22430937031623	48.81	0.70858	48.81	48.526	49.235	0					25	13	3	0	0	0	0.53367	1	17203	17203		18.146	0.011366	1	6417200	+		51365	22858	37326	37629	50166	50166					-0.05923388615792646
SSNVSFFAE	9	Unmodified	_SSNVSFFAE_					0	0	0			REV__ENSG00000253729|ENST00000314191|PRKDC	REV__ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	A375_MHC_IP_R2	2	494.62396240234375	2	494.224539	986.434526	-0.38854	-0.00019203	0.29286	0.00014474	-0.09568	-4.7287E-05	494.2244262486017	47.997	0.85591	48.758	48.48	49.336	0.76128					30	16	3	0	0	0	0.41409	1	18000	18000		24.021	4.5816	1	6976700	+		51366	22858	37326	37629	50167	50167					-0.05923388615792646
SSNYFYPTY	9	Unmodified	_SSNYFYPTY_					0	0	0		nc|ENSG00000101977|P10911|MCF2;nc|ENSG00000101977|P10911-4|MCF2;nc|ENSG00000101977|P10911-3|MCF2;ENSG00000101977|ENST00000519895|MCF2	nc|ENSG00000101977|P10911|MCF2	nc|ENSG00000101977|P10911|MCF2	MULTI-MSMS	A375_MHC_IP_R1	1	571.688720703125	2	571.245472	1140.47639	-0.26349	-0.00015052	1.8188	0.001039	1.5553	0.00088848	571.2458970576486	60.031	0.40721	60.031	59.854	60.261	0					9	7	2	0	0	0	0.58047	1	21676	21676		15.847	1.9411	1	859840			51367	2342	37327	37630	50168	50168					-0.08822832927262425
SSPARSIVNL	10	Unmodified	_SSPARSIVNL_					0	0	0			REV__tr|U7T4W4|U7T4W4_FUSNUProteintranslocasesubunitSecYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secYPE=3SV=1	REV__tr|U7T4W4|U7T4W4_FUSNUProteintranslocasesubunitSecYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secYPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	522.6954345703125	2	522.29583	1042.57711	-0.49422	-0.00025813	-0.14765	-7.7114E-05	-0.64187	-0.00033524	522.2957419026086	46.279	0.45188	46.279	46.043	46.495	0					13	8	2	0	0	0	0.54492	1	16237	16237		24.991	0	1	2461200	+		51368	28807	37328	37631	50169	50169					0.057522438462456194
SSPCHCIS	8	Unmodified	_SSPCHCIS_					0	0	0			REV__nc|ENSG00000146530|Q8N2E2-3|VWDE	REV__nc|ENSG00000146530|Q8N2E2-3|VWDE	MSMS	A375_MHC_IP_R1	1	417.1666564941406	2	417.167656	832.320759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.81	1	143.81	143.31	144.31	0								0	0	0	0.16876	1	55164	55164		2.5775	0	1		+		51369	19541	37329	37632	50170	50170					-0.1021089825405852
SSPGGASFYHW	11	Unmodified	_SSPGGASFYHW_					0	0	0		nc|ENSG00000160323|Q76LX8-4|ADAMTS13;nc|ENSG00000160323|Q76LX8-3|ADAMTS13;ENSG00000160323|ENST00000355699|ADAMTS13;nc|ENSG00000160323|Q76LX8|ADAMTS13	nc|ENSG00000160323|Q76LX8-4|ADAMTS13	nc|ENSG00000160323|Q76LX8-4|ADAMTS13	MSMS	A375_MHC_IP_R1	1	598.2583618164062	2	598.261988	1194.50942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.73	1	132.73	132.23	133.23	0								0	0	0	0.16249	1	51180	51180		5.7319	0.97584	1				51370	6417	37330	37633	50171	50171					-0.08005206084567362
SSPHVPAS	8	Unmodified	_SSPHVPAS_					0	0	0		ENST00000424358.1_1_20:33865191-33865500:-|nuORF;ENST00000435366.2_2_20:33865018-33865500:-|nuORF	ENST00000424358.1_1_20:33865191-33865500:-|nuORF	ENST00000424358.1_1_20:33865191-33865500:-|nuORF	MSMS	A375_MHC_IP_R2	2	391.1326904296875	2	391.195585	780.376617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.3	1	106.06	105.56	106.56	0.76308								0	0	0	0.16876	1	39828	39828		5.2307	0	1				51371	11771	37331	37634	50172	50172					-0.022356057505703575
SSPVRRDF	8	Unmodified	_SSPVRRDF_					0	0	0		ENST00000550292.1_1_12:30948620-30949103:+|nuORF	ENST00000550292.1_1_12:30948620-30949103:+|nuORF	ENST00000550292.1_1_12:30948620-30949103:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	482.6535949707031	2	482.253966	962.493378	-0.66829	-0.00032229	0.019292	9.3038E-06	-0.649	-0.00031298	482.2538700148067	26.128	0.50684	26.128	25.917	26.423	0					22	9	3	0	0	0	0.73262	1	7739	7739		24.991	1.8425	1	8346000			51372	13367	37332	37635	50173	50173					0.010631324691871669
SSPYDKGY	8	Unmodified	_SSPYDKGY_					0	0	0			REV__ENSG00000062370|ENST00000354340|ZNF112	REV__ENSG00000062370|ENST00000354340|ZNF112	MULTI-SECPEP	A375_MHC_IP_R2	2	459.10577392578125	2	458.705983	915.397412	-0.39009	-0.00017893	0.12129	5.5638E-05	-0.26879	-0.0001233	458.7058080535256	39.673	0.50743	40.447	40.169	40.676	0.77451					14	9	2	0	0	0	0.96184	1	14698	14698		13.042	0	1	2714400	+		51373	16458	37333	37636	50174	50174					-0.06367060161562677
SSQELSVAV	9	Unmodified	_SSQELSVAV_					0	0	0			REV__ENST00000372600.8_1_9:131679364-131679535:+|nuORF	REV__ENST00000372600.8_1_9:131679364-131679535:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	460.6396484375	2	460.24019	918.465826	-0.77215	-0.00035537	-0.22714	-0.00010454	-0.99929	-0.00045991	460.23990501690224	57.346	0.91534	58.095	57.814	58.729	0.74894					22	17	2	0	0	0	0.46038	1	21693	21693		21.747	0	1	2222400	+		51374	24070	37334	37637	50175	50175					0.0033318441828669165
SSQHRLKKKL	10	Unmodified	_SSQHRLKKKL_					0	0	0		PTPRN2|p.E649K|1|0.3|ENSG00000155093|chr7:157682781-157682781|C/T|missense_variant	PTPRN2|p.E649K|1|0.3|ENSG00000155093|chr7:157682781-157682781|C/T|missense_variant	PTPRN2|p.E649K|1|0.3|ENSG00000155093|chr7:157682781-157682781|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	409.3221130371094	3	408.922689	1223.74624	-0.3856	-0.00015768	-0.78388	-0.00032055	-1.1695	-0.00047822	408.9222968661947	135.54	1.1237	135.54	135.28	136.41	0					34	21	3	0	0	0	0.72712	1	52254	52254		0.15932	0	1	8584900			51375	15250	37335	37638	50176	50176					0.14331565199586294
SSQHRLKKKL	10	Unmodified	_SSQHRLKKKL_					0	0	0		PTPRN2|p.E649K|1|0.3|ENSG00000155093|chr7:157682781-157682781|C/T|missense_variant	PTPRN2|p.E649K|1|0.3|ENSG00000155093|chr7:157682781-157682781|C/T|missense_variant	PTPRN2|p.E649K|1|0.3|ENSG00000155093|chr7:157682781-157682781|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	408.922689	1223.74624	-0.3856	-0.00015768	-0.78388	-0.00032055	-1.1695	-0.00047822	408.9222968661947	135.54	1.1237	135.54	135.28	136.41	0	-0.047558	0.00020944	NaN	0.15932	34	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8584900			51376	15250	37335	37638							0.14331565199586294
SSQHRLKKKL	10	Unmodified	_SSQHRLKKKL_					0	0	0		PTPRN2|p.E649K|1|0.3|ENSG00000155093|chr7:157682781-157682781|C/T|missense_variant	PTPRN2|p.E649K|1|0.3|ENSG00000155093|chr7:157682781-157682781|C/T|missense_variant	PTPRN2|p.E649K|1|0.3|ENSG00000155093|chr7:157682781-157682781|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	408.922689	1223.74624	0.15132	6.1877E-05	-1.0793	-0.00044135	-0.92798	-0.00037947	408.92214332212063	135.5	0.86815	135.64	135.41	136.28	0.13901	0.047558	-0.00015296	NaN	0.15932	40	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10760000			51377	15250	37335	37638							0.14331565199586294
SSRATILVELS	11	Unmodified	_SSRATILVELS_					0	0	0		nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2	nc|ENSG00000007171|P35228-2|NOS2	nc|ENSG00000007171|P35228-2|NOS2	MULTI-MSMS	A375_MHC_IP_R1	1	588.734130859375	2	588.335153	1174.65575	-0.52095	-0.0003065	0.28568	0.00016808	-0.23527	-0.00013842	588.33514306352	131.12	1.9209	131.12	130.51	132.44	0					57	37	2	0	0	0	0.73378	1	50435	50435		5.2969	0.76802	1	21648000			51378	936	37336	37639	50177	50177					0.07541051360681195
SSRCGCKN	8	Unmodified	_SSRCGCKN_					0	0	0		nc|ENSG00000145794|Q96KG7-2|MEGF10;chr5:127291056-127299996|235|12.2|0.35|5.14|+|ENST00000418761|MEGF10,MEGF10;ENSG00000145794|ENST00000503335|MEGF10	nc|ENSG00000145794|Q96KG7-2|MEGF10	nc|ENSG00000145794|Q96KG7-2|MEGF10	MULTI-SECPEP	A375_MHC_IP_R2	2	854.7584838867188	1	854.360732	853.353456	-0.46179	-0.00039454	-1.1798	-0.001008	-1.6416	-0.0014025	854.3595072670757	144.52	0.14938	144.54	144.46	144.61	0.024414					8	3	3	0	0	0	0.972	1	56461	56461		0.79363	0	1	10675000			51379	482	37337	37640	50178	50178					-0.07908691131206069
SSRELIRKY	9	Unmodified	_SSRELIRKY_					0	0	0		ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;ENST00000590856.1_1_17:73826107-73826739:-|nuORF	ENSG00000092929|ENST00000207549|UNC13D	ENSG00000092929|ENST00000207549|UNC13D	MSMS	A375_MHC_IP_R1	1	384.6209716796875	3	384.555895	1150.64586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.773	1	31.773	31.273	32.273	0								0	0	0	0.15486	1	10203	10203		10.151	3.9587	1				51380	2015	37338	37641	50179	50179					0.0765590814596635
SSRELIRKY	9	Unmodified	_SSRELIRKY_					0	0	0		ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;ENST00000590856.1_1_17:73826107-73826739:-|nuORF	ENSG00000092929|ENST00000207549|UNC13D	ENSG00000092929|ENST00000207549|UNC13D	MSMS	A375_MHC_IP_R1	1	384.60833740234375	3	384.555895	1150.64586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.923	1	31.923	31.423	32.423	0								0	0	0	0.15486	1	10266	10266		6.6304	0.43853	1				51381	2015	37338	37641	50180	50180					0.0765590814596635
SSRELIRKY	9	Unmodified	_SSRELIRKY_					0	0	0		ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;ENST00000590856.1_1_17:73826107-73826739:-|nuORF	ENSG00000092929|ENST00000207549|UNC13D	ENSG00000092929|ENST00000207549|UNC13D	MSMS	A375_MHC_IP_R2	2	384.60821533203125	3	384.555895	1150.64586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.121	1	30.839	30.339	31.339	0.71857								0	0	0	0.13927	1	10568	10568		29.841	15.435	1				51382	2015	37338	37641	50181	50181					0.0765590814596635
SSRELIRKY	9	Unmodified	_SSRELIRKY_					0	0	0		ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;ENST00000590856.1_1_17:73826107-73826739:-|nuORF	ENSG00000092929|ENST00000207549|UNC13D	ENSG00000092929|ENST00000207549|UNC13D	MSMS	A375_MHC_IP_R2	2	384.60797119140625	3	384.555895	1150.64586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.685	1	31.403	30.903	31.903	0.71857								0	0	0	0.15253	1	10800	10800		17.443	7.6784	1				51383	2015	37338	37641	50182	50182					0.0765590814596635
SSREPHIIY	9	Unmodified	_SSREPHIIY_					0	0	0			REV__ANGPTL5|p.G174R|1|0.79|ENSG00000187151|chr11:101902641-101902641|C/T|missense_variant	REV__ANGPTL5|p.G174R|1|0.79|ENSG00000187151|chr11:101902641-101902641|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	551.14794921875	2	551.288005	1100.56146	-0.446	-0.00024587	0.087902	4.8459E-05	-0.35809	-0.00019741	551.2880046263862	53.686	0.71115	53.686	53.352	54.063	0					27	13	3	0	0	0	0.74412	1	19052	19052		10.074	0	1	10921000	+		51384	15397	37339	37642	50183	50183					0.015199573291965862
SSREPIRL	8	Unmodified	_SSREPIRL_					0	0	0			REV__nc|nan|A0A1B0GVB3-2|C7orf78	REV__nc|nan|A0A1B0GVB3-2|C7orf78	MULTI-MSMS	A375_MHC_IP_R2	2	479.67742919921875	2	479.277441	956.540328	-0.36367	-0.0001743	-0.0040912	-1.9608E-06	-0.36776	-0.00017626	479.2773251011022	115.33	5.995	116.02	113.03	119.03	0.68999					294	117	3	0	0	0	0.77741	1	44548	44548		4.3292	0	1	60713000	+		51385	22724	37340	37643	50184	50184					0.06031992020314192
SSRESPQAL	9	Unmodified	_SSRESPQAL_					0	0	0			REV__ENST00000354336.7_1_22:21271864-21272434:+|nuORF	REV__ENST00000354336.7_1_22:21271864-21272434:+|nuORF	MSMS	A375_MHC_IP_R1	1	487.6820373535156	2	487.748713	973.482873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.317	1	92.317	91.817	92.817	0								0	0	0	0.14767	1	33926	33926		25.399	0	1		+		51386	23810	37341	37644	50185	50185					-0.00492894975911895
SSRGLLKTL	9	Unmodified	_SSRGLLKTL_					0	0	0		nc|ENSG00000211452|P49895-3|DIO1	nc|ENSG00000211452|P49895-3|DIO1	nc|ENSG00000211452|P49895-3|DIO1	MSMS	A375_MHC_IP_R1	1	487.69903564453125	2	487.803291	973.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.75	1	77.75	77.25	78.25	0								0	0	0	0.14631	1	28371	28371		27.629	5.8822	1				51387	14869	37342	37645	50186	50186					0.10417735714247556
SSRGRIVTV	9	Unmodified	_SSRGRIVTV_					0	0	0		ENSG00000176387|ENST00000326152|HSD11B2	ENSG00000176387|ENST00000326152|HSD11B2	ENSG00000176387|ENST00000326152|HSD11B2	MULTI-MSMS	A375_MHC_IP_R2	2	488.1897277832031	2	487.790715	973.566878	-0.43133	-0.0002104	-0.13769	-6.7164E-05	-0.56902	-0.00027756	487.7904783153666	116.69	0.76358	117.35	117.07	117.84	0.65962					22	14	2	0	0	0	0.61998	1	44126	44126		13.906	13.906	1	9319700			51388	8016	37343	37646	50187	50187					0.07903680911658739
SSRGRPHLRR	10	Unmodified	_SSRGRPHLRR_					0	0	0			REV__ENST00000286371.7_1_3:141595540-141622555:+|nuORF	REV__ENST00000286371.7_1_3:141595540-141622555:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	611.7548828125	2	611.355411	1220.69627	-0.57578	-0.00035201	0.79781	0.00048775	0.22203	0.00013574	611.3557445403227	131.74	3.3485	131.74	131.38	134.73	0					140	62	3	0	0	0	0.72416	1	50961	50961		1.4819	1.4819	1	81661000	+		51389	23339	37344	37647	50188	50188					0.09474875314276687
SSRGRPHLRR	10	Unmodified	_SSRGRPHLRR_					0	0	0			REV__ENST00000286371.7_1_3:141595540-141622555:+|nuORF	REV__ENST00000286371.7_1_3:141595540-141622555:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	611.355411	1220.69627	-0.57578	-0.00035201	0.79781	0.00048775	0.22203	0.00013574	611.3557445403227	131.74	3.3485	131.74	131.38	134.73	0	-0.044703	-8.4786E-05	NaN	1.4819	140	62	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81661000	+		51390	23339	37344	37647							0.09474875314276687
SSRGRPHLRR	10	Unmodified	_SSRGRPHLRR_					0	0	0			REV__ENST00000286371.7_1_3:141595540-141622555:+|nuORF	REV__ENST00000286371.7_1_3:141595540-141622555:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	611.355411	1220.69627	-0.46557	-0.00028463	0.9345	0.00057131	0.46892	0.00028668	611.3558742428818	131.64	4.2699	131.83	131.59	135.86	0.18953	0.044703	8.2338E-05	NaN	1.4819	140	83	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91708000	+		51391	23339	37344	37647							0.09474875314276687
SSRHVLLQ	8	Unmodified	_SSRHVLLQ_					0	0	0		ENST00000429162.2_1_15:44581227-44599615:+|nuORF;nc|ENSG00000166734|Q6P4E1-3|GOLM2;CASC4|p.K182Sfs*2|1|0.59|ENSG00000166734|chr15:44332043-44332043|A/-|frameshift_variant;nc|ENSG00000166734|Q6P4E1-2|GOLM2;nc|ENSG00000166734|Q6P4E1-5|GOLM2;ENSG00000166734|ENST00000299957|GOLM2	ENST00000429162.2_1_15:44581227-44599615:+|nuORF	ENST00000429162.2_1_15:44581227-44599615:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	470.6719665527344	2	470.272158	938.529764	-0.66767	-0.00031398	-0.38035	-0.00017887	-1.048	-0.00049285	470.27187628892926	128.39	2.0266	128.62	128.14	130.17	0.23946					92	39	4	0	0	0	0.77804	1	50625	50625		2.0598	0	1	277270000			51392	291	37345	37648	50189	50189					0.05804009365908769
SSRIKEDEKNK	11	Unmodified	_SSRIKEDEKNK_					0	0	0			REV__ENSG00000138398|ENST00000260970|PPIG	REV__ENSG00000138398|ENST00000260970|PPIG	MSMS	A375_MHC_IP_R1	1	445.2872314453125	3	445.240524	1332.69974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.556	1	74.556	74.056	75.056	0								0	0	0	0.162	1	27156	27156		8.2864	6.0337	1		+		51393	19093	37346	37649	50190	50190					0.046700357869895015
SSRIKEDEKNK	11	Unmodified	_SSRIKEDEKNK_					0	0	0			REV__ENSG00000138398|ENST00000260970|PPIG	REV__ENSG00000138398|ENST00000260970|PPIG	MSMS	A375_MHC_IP_R2	2	445.2876892089844	3	445.240524	1332.69974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.727	1	74.462	73.962	74.962	0.73541								0	0	0	0.15346	1	27984	27984		18.34	11.716	1		+		51394	19093	37346	37649	50191	50191					0.046700357869895015
SSRKEQLVF	9	Unmodified	_SSRKEQLVF_					0	0	0		nc|ENSG00000223501|Q8N1B4-2|VPS52;ENSG00000223501|ENST00000445902|VPS52;ENST00000461743.1_1_6:33231479-33231808:-|nuORF;ENST00000471309.1_1_6:33231312-33232261:-|nuORF	nc|ENSG00000223501|Q8N1B4-2|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	MULTI-SECPEP	A375_MHC_IP_R2	2	547.7029418945312	2	547.303655	1092.59276	-0.84345	-0.00046163	0.059781	3.2718E-05	-0.78367	-0.00042891	547.3035253271287	32.669	0.45779	33.406	33.213	33.671	0.73691					21	8	3	0	0	0	0.20451	1	11647	11647		49.554	36.512	1	13164000			51395	9685	37347	37650	50192	50192					0.050165303632638825
SSRKKLIEE	9	Unmodified	_SSRKKLIEE_					0	0	0		tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	545.71630859375	2	545.316763	1088.61897	-0.76821	-0.00041892	0.17129	9.3408E-05	-0.59692	-0.00032551	545.316667237907	125.89	3.4419	126.18	125.22	128.66	0.2951					271	67	6	0	0	0	0.73804	2	49316	49316;49581		3.5965	0	1	497160000			51396	29843	37348	37651	50193;50194	50193					0.07820799534761136
SSRKLRTDLYI	11	Unmodified	_SSRKLRTDLYI_					0	0	0		ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	MULTI-SECPEP	A375_MHC_IP_R1	1	676.7868041992188	2	676.388251	1350.76195	-0.89591	-0.00060598	-0.55198	-0.00037335	-1.4479	-0.00097934	676.3879616528735	133.69	0.86505	133.69	133.25	134.12	0					28	16	2	0	0	0	0.99738	1	51581	51581		5.2969	3.9674	1	6978000			51397	1112	37349	37652	50195	50195					0.10059806926005876
SSRKLRTDLYI	11	Unmodified	_SSRKLRTDLYI_					0	0	0		ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	MULTI-SECPEP	A375_MHC_IP_R2	2	676.7866821289062	2	676.388251	1350.76195	-0.60033	-0.00040605	-1.0972	-0.00074213	-1.6975	-0.0011482	676.3872823138257	133.61	0.81056	133.78	133.35	134.16	0.16487					23	15	2	0	0	0	0.99738	1	52588	52588		5.2969	2.7984	1	7583400			51398	1112	37349	37652	50196	50196					0.10059806926005876
SSRLLTEV	8	Unmodified	_SSRLLTEV_					0	0	0		ENST00000455600.1_1_9:35539045-35546495:+|nuORF	ENST00000455600.1_1_9:35539045-35546495:+|nuORF	ENST00000455600.1_1_9:35539045-35546495:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	453.1583557128906	2	452.758549	903.502546	0.031094	1.4078E-05	-0.24058	-0.00010892	-0.20948	-9.4845E-05	452.7583401533004	47.93	0.55618	47.93	47.718	48.274	0					17	10	2	0	0	0	0.31691	1	16894	16894		57.471	2.6978	1	4276700			51399	12116	37350	37653	50197	50197					0.04693481034848901
SSRLLTEV	8	Unmodified	_SSRLLTEV_					0	0	0		ENST00000455600.1_1_9:35539045-35546495:+|nuORF	ENST00000455600.1_1_9:35539045-35546495:+|nuORF	ENST00000455600.1_1_9:35539045-35546495:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	453.1583251953125	2	452.758549	903.502546	-0.048942	-2.2159E-05	-0.02659	-1.2039E-05	-0.075532	-3.4198E-05	452.7584680138892	46.979	0.45916	47.741	47.563	48.022	0.76128					14	8	2	0	0	0	0.36486	1	17616	17616		71.134	12.455	1	4423400			51400	12116	37350	37653	50198	50198					0.04693481034848901
SSRLPRAGRLV	11	Unmodified	_SSRLPRAGRLV_					0	0	0		ENST00000309137.12_1_16:57207702-57219797:-|nuORF	ENST00000309137.12_1_16:57207702-57219797:-|nuORF	ENST00000309137.12_1_16:57207702-57219797:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	606.7699584960938	2	606.370195	1210.72584	-0.45782	-0.00027761	-0.99459	-0.00060309	-1.4524	-0.0008807	606.369507407255	129.12	1.9312	129.12	128.48	130.41	0					96	37	3	0	0	0	0.7342	1	49709	49709		4.897	0	1	113470000			51401	10608	37351	37654	50199	50199					0.12890394539772387
SSRLPRAGRLV	11	Unmodified	_SSRLPRAGRLV_					0	0	0		ENST00000309137.12_1_16:57207702-57219797:-|nuORF	ENST00000309137.12_1_16:57207702-57219797:-|nuORF	ENST00000309137.12_1_16:57207702-57219797:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	606.7686157226562	2	606.370195	1210.72584	-0.43411	-0.00026323	-1.28	-0.00077618	-1.7141	-0.0010394	606.3693505744959	127.29	1.6204	127.56	126.75	128.37	0.26593					62	31	3	0	0	0	0.73189	1	49856	49856		7.1017	0.89594	1	24870000			51402	10608	37351	37654	50200	50200					0.12890394539772387
SSRLVIIMKM	10	Unmodified	_SSRLVIIMKM_					0	0	0			REV__ENST00000438193.1_2_19:54872771-54881940:-|nuORF	REV__ENST00000438193.1_2_19:54872771-54881940:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	589.7424926757812	2	589.343412	1176.67227	-0.61733	-0.00036382	-0.61254	-0.000361	-1.2299	-0.00072482	589.3429091036026	128.94	3.0405	129.18	128.45	131.49	0.23947					241	59	6	0	0	0	0.72416	1	51220	51220		1.4819	1.4819	1	1087700000	+		51403	24779	37352	37655	50201	50201					0.09100137721407009
SSRPAQPPRLL	11	Unmodified	_SSRPAQPPRLL_					0	0	0		ENSG00000198715|ENST00000362007|GLMP;nc|ENSG00000198715|Q8WWB7-2|GLMP;ENST00000484214.1_1_1:156263748-156265436:-|nuORF	ENSG00000198715|ENST00000362007|GLMP	ENSG00000198715|ENST00000362007|GLMP	MULTI-MSMS	A375_MHC_IP_R1	1	611.7549438476562	2	611.356754	1220.69895	-0.54979	-0.00033611	-0.87346	-0.00053399	-1.4232	-0.00087011	611.3560661309215	130.08	2.6346	130.08	129.5	132.13	0					205	51	7	0	0	0	0.7342	1	50217	50217		4.897	1.6157	1	1337400000			51404	9305	37353	37656	50202	50202					0.09743285928607293
SSRPAQPPRLL	11	Unmodified	_SSRPAQPPRLL_					0	0	0		ENSG00000198715|ENST00000362007|GLMP;nc|ENSG00000198715|Q8WWB7-2|GLMP;ENST00000484214.1_1_1:156263748-156265436:-|nuORF	ENSG00000198715|ENST00000362007|GLMP	ENSG00000198715|ENST00000362007|GLMP	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	611.356754	1220.69895	-0.53215	-0.00032533	-1.0382	-0.00063473	-1.5704	-0.00096007	611.3559722288622	129.91	2.6356	130.12	129.59	132.23	0.21419	0.019677	-6.7274E-05	NaN	4.897	219	51	7	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1229200000			51405	9305	37353	37656							0.09743285928607293
SSRPPPKA	8	Unmodified	_SSRPPPKA_					0	0	0		ENSG00000156860|ENST00000356166|FBRS	ENSG00000156860|ENST00000356166|FBRS	ENSG00000156860|ENST00000356166|FBRS	MULTI-SECPEP	A375_MHC_IP_R2	2	838.7733154296875	1	839.473377	838.466101	-1.4071	-0.0011812	0.35754	0.00030015	-1.0496	-0.00088107	839.4737319261922	29.519	0.55569	30.218	29.981	30.537	0.69872					22	10	3	0	0	0	0.97144	1	10378	10378		2.3027	0	1	7778700			51406	6212	37354	37657	50203	50203					0.040406489287988734
SSRPPRKLPEP	11	Unmodified	_SSRPPRKLPEP_					0	0	0		ENST00000602662.1_3_1:19984160-19984526:+|nuORF	ENST00000602662.1_3_1:19984160-19984526:+|nuORF	ENST00000602662.1_3_1:19984160-19984526:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	633.0972290039062	2	632.362036	1262.70952	-0.75372	-0.00047662	-0.79532	-0.00050293	-1.549	-0.00097955	632.3614145941996	132.41	1.4743	132.6	132.25	133.73	0.18953					35	28	2	0	0	0	0.99018	1	52369	52369		11.495	6.1978	1	16406000			51407	13887	37355	37658	50204	50204					0.08867268583048826
SSRPTSTIW	9	Unmodified	_SSRPTSTIW_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-SECPEP	A375_MHC_IP_R1	1	518.1670532226562	2	517.766906	1033.51926	-0.49547	-0.00025654	1.2502	0.00064732	0.75475	0.00039078	517.7671365738929	43.765	0.8145	43.765	43.095	43.909	0					20	15	2	0	0	0	0.38578	1	15223	15223		34.402	2.0962	1	3785100			51408	1197	37356	37659	50205	50205					0.0038398192079966975
SSRQIISHW	9	Unmodified	_SSRQIISHW_					0	0	0		ENSG00000100393|ENST00000263253|EP300;ENSG00000005339|ENST00000262367|CREBBP	ENSG00000100393|ENST00000263253|EP300;ENSG00000005339|ENST00000262367|CREBBP	ENSG00000100393|ENST00000263253|EP300	MULTI-SECPEP	A375_MHC_IP_R1	1	372.2648620605469	3	371.86484	1112.57269	0.51058	0.00018987	-0.70077	-0.00026059	-0.19019	-7.0724E-05	371.86459588646716	35.512	0.86563	35.512	35.319	36.184	0					24	16	2	0	0	0	0.74169	1	11838	11838		11.518	1.9739	1	4576900			51409	2172;890	37357	37660	50206	50206					0.020907794233153254
SSRQIISHW	9	Unmodified	_SSRQIISHW_					0	0	0		ENSG00000100393|ENST00000263253|EP300;ENSG00000005339|ENST00000262367|CREBBP	ENSG00000100393|ENST00000263253|EP300;ENSG00000005339|ENST00000262367|CREBBP	ENSG00000100393|ENST00000263253|EP300	MULTI-SECPEP	A375_MHC_IP_R2	2	372.2646789550781	3	371.86484	1112.57269	0.25425	9.4548E-05	-0.56982	-0.0002119	-0.31557	-0.00011735	371.86465237661173	34.621	0.55613	35.384	35.171	35.727	0.76338					16	10	2	0	0	0	0.54812	1	12529	12529		23.801	10.928	1	4111600			51410	2172;890	37357	37660	50207	50207					0.020907794233153254
SSRQKLSPV	9	Unmodified	_SSRQKLSPV_					0	0	0			REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF	REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.6903991699219	2	501.290548	1000.56654	0.040667	2.0386E-05	-0.013379	-6.7069E-06	0.027288	1.3679E-05	501.2904445562053	114.39	5.9949	114.39	111.52	117.51	0					272	117	3	0	0	0	0.70886	2	42116	42116;42744		6.2058	2.6093	1	35626000	+		51411	22897	37358	37661	50208;50209	50208					0.06628261191804086
SSRQKLSPV	9	Unmodified	_SSRQKLSPV_					0	0	0			REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF	REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.69036865234375	2	501.290548	1000.56654	-0.40326	-0.00020215	0.18894	9.4712E-05	-0.21433	-0.00010744	501.29047123884834	119.29	2.7395	119.29	117.51	120.25	0					122	53	4	0	0	0	0.70886	1	44137	44137		6.2058	1.8765	1	119750000	+		51412	22897	37358	37661	50210	50210					0.06628261191804086
SSRQKLSPV	9	Unmodified	_SSRQKLSPV_					0	0	0			REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF	REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.6903076171875	2	501.290548	1000.56654	-0.5669	-0.00028418	0.25162	0.00012613	-0.31528	-0.00015805	501.29057021389656	120.05	0.81009	120.05	119.84	120.65	0					28	15	2	0	0	0	0.70886	1	44665	44665		6.2058	1.8765	1	71833000	+		51413	22897	37358	37661	50211	50211					0.06628261191804086
SSRQKLSPV	9	Unmodified	_SSRQKLSPV_					0	0	0			REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF	REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.6901550292969	2	501.290548	1000.56654	-0.7313	-0.00036659	0.13993	7.0148E-05	-0.59137	-0.00029645	501.29051103950144	121.05	1.9774	121.05	120.55	122.53	0					89	38	3	0	0	0	0.70886	1	45470	45470		6.2058	6.2058	1	74159000	+		51414	22897	37358	37661	50212	50212					0.06628261191804086
SSRQKLSPV	9	Unmodified	_SSRQKLSPV_					0	0	0			REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF	REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	501.68988037109375	2	501.290548	1000.56654	-0.3975	-0.00019926	0.057157	2.8652E-05	-0.34035	-0.00017061	501.2904638081066	114.09	5.6505	114.8	111.98	117.63	0.70984					264	110	4	0	0	0	0.73415	1	43754	43754		3.9444	0.3479	1	35047000	+		51415	22897	37358	37661	50213	50213					0.06628261191804086
SSRQKLSPV	9	Unmodified	_SSRQKLSPV_					0	0	0			REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF	REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	501.6917419433594	2	501.290548	1000.56654	-0.51046	-0.00025589	0.30508	0.00015293	-0.20538	-0.00010296	501.2904667214218	117.97	3.6012	118.58	117.12	120.73	0.60909					213	70	5	0	0	0	0.70886	3	44412	44412;45318;45581		6.2058	2.6093	1	168710000	+		51416	22897	37358	37661	50214;50215;50216	50214					0.06628261191804086
SSRQKLSPV	9	Unmodified	_SSRQKLSPV_					0	0	0			REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF	REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	501.6902160644531	2	501.290548	1000.56654	-0.57483	-0.00028816	-0.16118	-8.0799E-05	-0.73601	-0.00036896	501.2903817384042	120.3	2.329	120.83	119.84	122.17	0.5321					88	45	3	0	0	0	0.70886	1	46408	46408		6.2058	6.2058	1	77391000	+		51417	22897	37358	37661	50217	50217					0.06628261191804086
SSRQKLSPV	9	Unmodified	_SSRQKLSPV_					0	0	0			REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF	REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	502.1922912597656	2	501.290548	1000.56654	-0.61478	-0.00030818	-0.17072	-8.5582E-05	-0.7855	-0.00039376	501.2902912133757	121.98	0.91378	122.43	121.98	122.89	0.44488					36	17	3	0	0	0	0.73415	1	46682	46682		3.9444	0	1	33298000	+		51418	22897	37358	37661	50218	50218					0.06628261191804086
SSRRLEPL	8	Unmodified	_SSRRLEPL_					0	0	0		ENST00000307564.8_1_9:117129889-117130765:-|nuORF	ENST00000307564.8_1_9:117129889-117130765:-|nuORF	ENST00000307564.8_1_9:117129889-117130765:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	479.6484680175781	2	479.277441	956.540328	-0.44288	-0.00021226	0.18313	8.7771E-05	-0.25974	-0.00012449	479.27740587608423	109.27	5.8121	110.01	107.38	113.19	0.74683					289	113	4	0	0	0	0.77741	1	41349	41349		4.3292	0	1	18458000			51419	10591	37359	37662	50219	50219					0.06031992020314192
SSRRLEPLL	9	Unmodified	_SSRRLEPLL_					0	0	0		ENST00000307564.8_1_9:117129889-117130765:-|nuORF	ENST00000307564.8_1_9:117129889-117130765:-|nuORF	ENST00000307564.8_1_9:117129889-117130765:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1502685546875	2	535.819473	1069.62439	-0.97364	-0.00052169	-0.037982	-2.0352E-05	-1.0116	-0.00054204	535.8195334734871	23.457	0.20378	23.457	23.33	23.533	0					5	3	2	0	0	0	0.75519	1	6460	6460		6.2058	0	1	3527500			51420	10591	37360	37663	50220	50220					0.09236523117237994
SSRRRFRY	8	Unmodified	_SSRRRFRY_					0	0	0			REV__ENSG00000006116|ENST00000005284|CACNG3	REV__ENSG00000006116|ENST00000005284|CACNG3	MULTI-SECPEP	A375_MHC_IP_R1	1	564.1853637695312	2	564.312681	1126.61081	-0.67895	-0.00038314	-0.52778	-0.00029783	-1.2067	-0.00068097	564.312236414332	39.787	0.35518	39.787	39.592	39.948	0					11	6	2	0	0	0	0.972	1	13565	13565		4.756	4.756	1	2088300	+		51421	16131	37361	37664	50221	50221					0.05256710128651321
SSRRRFRY	8	Unmodified	_SSRRRFRY_					0	0	0			REV__ENSG00000006116|ENST00000005284|CACNG3	REV__ENSG00000006116|ENST00000005284|CACNG3	MULTI-MATCH	A375_MHC_IP_R2	2		2	564.312681	1126.61081	-0.67888	-0.0003831	-1.1413	-0.00064404	-1.8202	-0.0010271	564.3117379650172	39.105	0.45933	39.88	39.607	40.067	0.77451	0.0461	-0.00055281	NaN	4.756	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2413800	+		51422	16131	37361	37664							0.05256710128651321
SSRRRGERD	9	Unmodified	_SSRRRGERD_					0	0	0		ENST00000588396.1_1_18:59557720-59560115:-|nuORF;ENST00000312828.3_1_18:59483799-59560115:-|nuORF	ENST00000588396.1_1_18:59557720-59560115:-|nuORF	ENST00000588396.1_1_18:59557720-59560115:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	372.9292907714844	3	373.530632	1117.57007	0.030803	1.1506E-05	2.9031	0.0010844	2.9339	0.0010959	373.5317169328697	23.602	0.30592	23.602	23.381	23.687	0					7	5	2	0	0	0	0.67483	1	6519	6519		14.405	9.8765	1	3154000			51423	10637	37362	37665	50222	50222					0.015983240183686576
SSRRRRRK	8	Unmodified	_SSRRRRRK_					0	0	0			REV__ENST00000424834.6_1_13:24798679-24823837:+|nuORF	REV__ENST00000424834.6_1_13:24798679-24823837:+|nuORF	MSMS	A375_MHC_IP_R1	1	367.7572326660156	3	367.89899	1100.67514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.181	1	19.181	18.681	19.681	0								0	0	0	0.16876	1	4621	4621		0	0	1		+		51424	24630	37363	37666	50223	50223					0.1288291000546451
SSRRRRRRQQR	11	Unmodified	_SSRRRRRRQQR_					0	0	0		ENST00000397992.5_1_16:72984846-73092758:-|nuORF	ENST00000397992.5_1_16:72984846-73092758:-|nuORF	ENST00000397992.5_1_16:72984846-73092758:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	514.705810546875	3	514.640461	1540.89955	-0.86836	-0.00044689	0.16601	8.5437E-05	-0.70235	-0.00036146	514.6405417253803	142.41	0.40346	142.41	142.08	142.49	0					12	7	2	0	0	0	0.73886	1	54669	54669		0.45452	0.45452	1	2053100			51425	11513	37364	37667	50224	50224					0.15073993088640236
SSRSHTSLY	9	Unmodified	_SSRSHTSLY_					0	0	0		ENSG00000161551|ENST00000638348|ZNF577;nc|ENSG00000161551|Q9BSK1-2|ZNF577	ENSG00000161551|ENST00000638348|ZNF577	ENSG00000161551|ENST00000638348|ZNF577	MULTI-SECPEP	A375_MHC_IP_R2	2	519.9857788085938	2	519.254163	1036.49377	-0.66969	-0.00034774	0.95888	0.0004979	0.2892	0.00015017	519.2547320259683	75.867	0.35567	76.608	76.436	76.792	0.74052					10	6	2	0	0	0	0.77834	1	28865	28865		0.52476	0	1	761500			51426	6478	37365	37668	50225	50225					-0.0230149260160033
SSRTFATTSL	10	Unmodified	_SSRTFATTSL_					0	0	0			REV__SETX|p.P496S|1|0.17|ENSG00000107290|chr9:132330112-132330112|G/A|missense_variant	REV__SETX|p.P496S|1|0.17|ENSG00000107290|chr9:132330112-132330112|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1502685546875	2	535.77747	1069.54039	-1.0015	-0.0005366	-4.1086	-0.0022013	-5.1101	-0.0027379	535.7756101464844	23.682	0.3057	23.682	23.432	23.737	0					8	5	2	0	0	0	0.77204	1	6460	6460		16.149	0	1	3164900	+		51427	27951	37366	37669	50226	50226					0.008399472296559907
SSRTNILVSI	10	Unmodified	_SSRTNILVSI_					0	0	0			REV__ENST00000481551.5_1_7:92158186-92158869:+|nuORF	REV__ENST00000481551.5_1_7:92158186-92158869:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	545.6769409179688	2	545.316763	1088.61897	-0.27651	-0.00015079	0.29234	0.00015942	0.015825	8.6297E-06	545.3167331202228	125.94	3.5806	125.94	124.6	128.18	0					224	70	5	0	0	0	0.71466	1	48062	48062		5.7319	0.43497	1	468140000	+		51428	25261	37367	37670	50227	50227					0.07820799534761136
SSRTPRPSAP	10	Unmodified	_SSRTPRPSAP_					0	0	0			REV__ENST00000463471.6_1_1:2490981-2492960:+|nuORF	REV__ENST00000463471.6_1_1:2490981-2492960:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	528.1613159179688	2	528.283254	1054.55196	-0.5755	-0.00030403	2.1671	0.0011448	1.5916	0.0008408	528.2847021946814	28.548	1.1094	28.548	27.887	28.996	0					34	21	2	0	0	0	0.69172	1	8549	8549		19.257	9.1831	1	1899900	+		51429	25000	37368	37671	50228	50228					0.026861890436521207
SSRTPRPSAP	10	Unmodified	_SSRTPRPSAP_					0	0	0			REV__ENST00000463471.6_1_1:2490981-2492960:+|nuORF	REV__ENST00000463471.6_1_1:2490981-2492960:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	528.283254	1054.55196	-0.52115	-0.00027531	3.3414	0.0017652	2.8203	0.0014899	528.2851110170233	27.679	0.76001	28.357	28.098	28.858	0.67857	-0.095398	0.0007847	NaN	13.906	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1886700	+		51430	25000	37368	37671							0.026861890436521207
SSRVTLTLLTS	11	Unmodified	_SSRVTLTLLTS_					0	0	0			REV__HIVEP1|p.S1866L|1|0.24|ENSG00000095951|chr6:12125392-12125392|C/T|missense_variant	REV__HIVEP1|p.S1866L|1|0.24|ENSG00000095951|chr6:12125392-12125392|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	589.7424926757812	2	589.342978	1176.6714	-0.42685	-0.00025156	0.30491	0.0001797	-0.12194	-7.1862E-05	589.3430052761335	129.12	2.9462	129.12	128.38	131.33	0					231	57	6	0	0	0	0.73672	1	50308	50308		2.4985	0.65425	1	1725099999.9999998	+		51431	26745	37369	37672	50229	50229					0.09013337877695449
SSRYEKESRKK	11	Unmodified	_SSRYEKESRKK_					0	0	0		SRSF10|p.G220S|1|0.2|ENSG00000188529|chr1:23971273-23971273|C/T|missense_variant	SRSF10|p.G220S|1|0.2|ENSG00000188529|chr1:23971273-23971273|C/T|missense_variant	SRSF10|p.G220S|1|0.2|ENSG00000188529|chr1:23971273-23971273|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	699.7781982421875	2	699.378414	1396.74228	-0.8556	-0.00059839	-0.19112	-0.00013367	-1.0467	-0.00073206	699.3784402731557	132.36	0.60669	132.36	132.08	132.69	0					31	11	3	0	0	0	0.73809	1	50981	50981		1.1933	0	1	12112000			51432	29250	37370	37673	50230	50230					0.0597743091520897
SSSCNSCA	8	Unmodified	_SSSCNSCA_					0	0	0			REV__tr|U7SSQ7|U7SSQ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01346PE=4SV=1	REV__tr|U7SSQ7|U7SSQ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01346PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	758.6214599609375	1	758.244365	757.237089	-0.69331	-0.0005257	-0.68412	-0.00051873	-1.3774	-0.0010444	758.2448732510279	3.9791	0.18568	3.9791	3.9111	4.0968	0					48	27	2	0	0	0	0.77861	1	927	927		0	0	1	177180	+		51433	28442	37371	37674	50231	50231					-0.1512405442176714
SSSEEVSWISW	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SSSEEVSWISW_					1	0	0		ENST00000468255.5_1_6:31633906-31636470:+|nuORF;ENST00000465481.5_1_6:31633906-31635902:+|nuORF;ENST00000475875.1_1_6:31633906-31634962:+|nuORF;ENST00000481269.1_1_6:31633906-31636957:+|nuORF;ENSG00000204435|ENST00000375882|CSNK2B;chr6:31669172-31669328|472|18.18|0.0|20.79|+|ENST00000677536|CSNK2B,CSNK2B	ENST00000468255.5_1_6:31633906-31636470:+|nuORF	ENST00000468255.5_1_6:31633906-31636470:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	670.1956787109375	2	669.796057	1337.57756	-0.93463	-0.00062601	0.38952	0.0002609	-0.54511	-0.00036511	669.7963500207425	138.78	0.45236	138.78	138.56	139.01	0					22	8	4	0	0	0	0.00072539	1	53356	53356		163.04	128.1	1	15104000			51434	493	37372	37675	50232	50232					-0.07772426015230849
SSSEEVSWISW	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SSSEEVSWISW_					1	0	0		ENST00000468255.5_1_6:31633906-31636470:+|nuORF;ENST00000465481.5_1_6:31633906-31635902:+|nuORF;ENST00000475875.1_1_6:31633906-31634962:+|nuORF;ENST00000481269.1_1_6:31633906-31636957:+|nuORF;ENSG00000204435|ENST00000375882|CSNK2B;chr6:31669172-31669328|472|18.18|0.0|20.79|+|ENST00000677536|CSNK2B,CSNK2B	ENST00000468255.5_1_6:31633906-31636470:+|nuORF	ENST00000468255.5_1_6:31633906-31636470:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	670.1953735351562	2	669.796057	1337.57756	-0.57762	-0.00038689	0.31269	0.00020944	-0.26493	-0.00017745	669.7962368652782	138.81	0.4514	138.87	138.7	139.15	0.059906					24	8	4	0	0	0	0.0069695	1	54400	54400		129.77	98.504	1	14162000			51435	493	37372	37675	50233	50233					-0.07772426015230849
SSSERGNWIQ	10	Unmodified	_SSSERGNWIQ_					0	0	0		ENST00000355327.7_2_15:71389306-71507474:+|nuORF	ENST00000355327.7_2_15:71389306-71507474:+|nuORF	ENST00000355327.7_2_15:71389306-71507474:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	582.6754760742188	2	582.275626	1162.5367	-0.26782	-0.00015594	-0.20952	-0.000122	-0.47734	-0.00027794	582.2754270810925	31.316	0.60842	31.316	31.059	31.667	0					20	11	2	0	0	0	0.30287	1	10012	10012		39.95	3.4435	1	10753000			51436	10951	37373	37676	50234	50234					-0.03806722544186414
SSSFQEEVLK	10	Unmodified	_SSSFQEEVLK_					0	0	0			REV__ENSG00000170448|ENST00000507489|NFXL1	REV__ENSG00000170448|ENST00000507489|NFXL1	MULTI-SECPEP	A375_MHC_IP_R1	1	577.6904907226562	2	577.290411	1152.56627	0.27008	0.00015591	-0.00062421	-3.6035E-07	0.26945	0.00015555	577.2902487556421	44.6	0.66143	44.6	44.318	44.98	0					46	12	5	0	0	0	0.42334	1	15533	15533		43.772	1.8168	1	25833000	+		51437	20993	37374	37677	50235	50235					-0.0039120331871345115
SSSGAGGC	8	Unmodified	_SSSGAGGC_					0	0	0		ENST00000356971.3_1_6:52925737-52926583:-|nuORF	ENST00000356971.3_1_6:52925737-52926583:-|nuORF	ENST00000356971.3_1_6:52925737-52926583:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	626.1633911132812	1	625.224616	624.217339	-0.33368	-0.00020862	-0.51852	-0.00032419	-0.8522	-0.00053281	625.221148922288	106.82	0.35745	106.82	106.62	106.98	0					8	6	2	0	0	0	0.77861	1	39187	39187		0	0	1	648830			51438	10974	37375	37678	50236	50236					-0.10980062370219912
SSSGDGTLRLW	11	Unmodified	_SSSGDGTLRLW_					0	0	0		nc|ENSG00000160193|P57081-3|WDR4;nc|ENSG00000160193|P57081-2|WDR4;ENSG00000160193|ENST00000398208|WDR4	nc|ENSG00000160193|P57081-3|WDR4	nc|ENSG00000160193|P57081-3|WDR4	MULTI-SECPEP	A375_MHC_IP_R2	2	590.1926879882812	2	589.793652	1177.57275	-0.62796	-0.00037037	0.65517	0.00038642	0.027213	1.605E-05	589.7931610973524	74.745	0.76257	75.483	75.009	75.772	0.73751					40	14	4	0	0	0	0.041007	1	28337	28337		93.938	0	1	6963800			51439	6403	37376	37679	50237	50237					-0.008932653673355162
SSSGGGGS	8	Unmodified	_SSSGGGGS_					0	0	0		nc|ENSG00000167470|Q504T8|MIDN;ENSG00000103449|ENST00000251020|SALL1;nc|ENSG00000103449|Q9NSC2-2|SALL1;ENSG00000174282|ENST00000380599|ZBTB4;nc|ENSG00000140948|Q8WYQ9|ZCCHC14;nc|ENSG00000140948|Q8WYQ9-2|ZCCHC14;ENSG00000140948|ENST00000671377|ZCCHC14;ENSG00000167470|ENST00000682408|MIDN	REV__CON__P35908;ENSG00000103449|ENST00000251020|SALL1;ENSG00000174282|ENST00000380599|ZBTB4;REV__nc|ENSG00000121274|Q8NDF8-5|TENT4B;nc|ENSG00000140948|Q8WYQ9|ZCCHC14;ENSG00000167470|ENST00000682408|MIDN	REV__nc|ENSG00000121274|Q8NDF8-5|TENT4B	MULTI-MSMS	A375_MHC_IP_R2	2	596.2339477539062	1	595.23181	594.224533	-0.569	-0.00033869	-0.7494	-0.00044607	-1.3184	-0.00078475	595.230985969039	102.44	0.15291	103.2	103.07	103.23	0.76428					4	2	2	0	0	0	0.77861	1	38802	38802		0	0	1	511690		+	51440	15865;18154;2452;7867;5196;7186	37377	37680	50238	50238					-0.08881006498143051
SSSGTLCW	8	Unmodified	_SSSGTLCW_					0	0	0			REV__ENST00000492568.1_1_1:230398906-230399248:+|nuORF	REV__ENST00000492568.1_1_1:230398906-230399248:+|nuORF	MSMS	A375_MHC_IP_R1	1	420.57843017578125	2	420.681453	839.348354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.69	1	101.69	101.19	102.19	0								0	0	0	0.16876	1	37369	37369		5.7604	0	1		+		51441	25411	37378	37681	50239	50239					-0.07774671722177118
SSSISSNLSF	10	Unmodified	_SSSISSNLSF_					0	0	0			REV__nc|ENSG00000078018|P11137-3|MAP2	REV__nc|ENSG00000078018|P11137-3|MAP2	MULTI-MSMS	A375_MHC_IP_R1	1	515.1488647460938	2	514.748379	1027.4822	-0.7811	-0.00040207	1.0497	0.00054035	0.26864	0.00013828	514.7489198185493	68.347	0.50758	68.347	68.159	68.666	0					16	9	2	0	0	0	0.60608	1	24797	24797		20.415	2.2682	1	2298200	+		51442	16701	37379	37682	50240	50240					-0.030437344156325707
SSSLRVILGV	10	Unmodified	_SSSLRVILGV_					0	0	0			REV__ENST00000586518.1_1_17:73774796-73774838:-|nuORF	REV__ENST00000586518.1_1_17:73774796-73774838:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1818237304688	2	515.816399	1029.61824	-0.50177	-0.00025882	2.5655	0.0013233	2.0637	0.0010645	515.8189482705465	98.571	0.51163	98.571	98.25	98.762	0					13	9	2	0	0	0	0.88918	1	36220	36220		8.7454	0.58988	1	517620	+		51443	26390	37380	37683	50241	50241					0.10462004885721399
SSSLRVPLP	9	Unmodified	_SSSLRVPLP_					0	0	0			REV__ENST00000559215.5_1_15:78730527-78730662:+|nuORF	REV__ENST00000559215.5_1_15:78730527-78730662:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	478.19000244140625	2	478.282192	954.549831	-0.32204	-0.00015402	0.14292	6.8355E-05	-0.17912	-8.5669E-05	478.2823142340566	51.865	0.71209	51.865	51.525	52.237	0					17	13	2	0	0	0	0.65527	1	18358	18358		22.736	2.2827	1	2237200	+		51444	26152	37381	37684	50242	50242					0.07073760305854648
SSSLVPMH	8	Unmodified	_SSSLVPMH_					0	0	0		nc|ENSG00000008118|Q96NX5-2|CAMK1G;ENSG00000008118|ENST00000361322|CAMK1G	nc|ENSG00000008118|Q96NX5-2|CAMK1G	nc|ENSG00000008118|Q96NX5-2|CAMK1G	MULTI-MSMS	A375_MHC_IP_R1	1	429.6131286621094	2	429.212921	856.411288	-0.38376	-0.00016472	0.051956	2.23E-05	-0.3318	-0.00014241	429.21290527207026	36.778	0.70906	36.778	36.439	37.148	0					20	13	2	0	0	0	0.77123	1	12289	12289		14.582	0	1	4416300			51445	952	37382	37685	50243	50243					-0.022661059341203327
SSSNDLLRF	9	Unmodified	_SSSNDLLRF_					0	0	0		WDFY3|p.P1578S|1|0.3|ENSG00000163625|chr4:84774842-84774842|G/A|missense_variant	WDFY3|p.P1578S|1|0.3|ENSG00000163625|chr4:84774842-84774842|G/A|missense_variant	WDFY3|p.P1578S|1|0.3|ENSG00000163625|chr4:84774842-84774842|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	519.9857788085938	2	519.764363	1037.51417	-0.65101	-0.00033837	0.50803	0.00026405	-0.14298	-7.4317E-05	519.764384229294	76.052	0.25215	76.792	76.691	76.943	0.74052					6	4	2	0	0	0	0.71541	1	28865	28865		3.9444	0	1	665470			51446	30158	37383	37686	50244	50244					-0.0030832194179311045
SSSNHPIPTPG	11	Unmodified	_SSSNHPIPTPG_					0	0	0			REV__nc|ENSG00000261832|Q13286-5|CLN3	REV__nc|ENSG00000261832|Q13286-5|CLN3	MSMS	A375_MHC_IP_R1	1	365.210205078125	3	365.180605	1092.51999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.253	1	53.253	52.753	53.753	0								0	0	0	0.16191	1	18977	18977		4.4062	0.52982	1		+		51447	22099	37384	37687	50245	50245					-0.022572234301378558
SSSPLRLVP	9	Unmodified	_SSSPLRLVP_					0	0	0		nc|ENSG00000055118|Q12809-2|KCNH2;nc|ENSG00000055118|Q12809-7|KCNH2;nc|ENSG00000055118|Q12809-4|KCNH2;ENSG00000055118|ENST00000262186|KCNH2	nc|ENSG00000055118|Q12809-2|KCNH2	nc|ENSG00000055118|Q12809-2|KCNH2	MULTI-MSMS	A375_MHC_IP_R2	2	478.6815490722656	2	478.282192	954.549831	-0.65588	-0.0003137	-0.094872	-4.5376E-05	-0.75075	-0.00035907	478.28205667628305	50.986	0.70798	51.74	51.462	52.17	0.75406					26	13	3	0	0	0	0.32092	1	19209	19209		29.082	0	1	2732000			51448	1267	37385	37688	50246	50246					0.0707376030584328
SSSREESPEPY	11	Unmodified	_SSSREESPEPY_					0	0	0		ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	MULTI-MSMS	A375_MHC_IP_R1	1	423.5862731933594	3	423.186085	1266.53642	-0.20327	-8.6022E-05	0.78999	0.00033431	0.58672	0.00024829	423.18644332463873	32.27	0.51054	32.27	32.024	32.535	0					19	9	3	0	0	0	0.72494	1	10433	10433		7.846	0	1	5022400			51449	9346	37386	37689	50247	50247					-0.0861818705470796
SSSREESPEPY	11	Unmodified	_SSSREESPEPY_					0	0	0		ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	MULTI-MSMS	A375_MHC_IP_R1	1	634.6754760742188	2	634.275489	1266.53642	-0.81418	-0.00051641	0.62107	0.00039393	-0.1931	-0.00012248	634.275999409594	32.308	0.30623	32.308	32.127	32.434	0					12	5	3	0	0	0	0.72494	1	10446	10446		13.615	0.74226	1	3268300			51450	9346	37386	37689	50248	50248					-0.0861818705470796
SSSREESPEPY	11	Unmodified	_SSSREESPEPY_					0	0	0		ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	MULTI-MSMS	A375_MHC_IP_R2	2	423.58612060546875	3	423.186085	1266.53642	-0.16254	-6.8785E-05	0.57537	0.00024349	0.41283	0.00017471	423.18633730950427	31.538	0.40856	32.257	32.026	32.434	0.71857					17	7	3	0	0	0	0.66366	1	11163	11163		11.065	0	1	8240200			51451	9346	37386	37689	50249	50249					-0.0861818705470796
SSSREESPEPY	11	Unmodified	_SSSREESPEPY_					0	0	0		ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	MULTI-MATCH	A375_MHC_IP_R2	2		2	634.275489	1266.53642	-0.8159	-0.00051751	0.67662	0.00042916	-0.13928	-8.8345E-05	634.2761607803187	31.544	0.35764	32.265	32.079	32.437	0.72093	-0.02109	3.6558E-05	NaN	13.615	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2619700			51452	9346	37386	37689							-0.0861818705470796
SSSSEEYQKVW	11	Unmodified	_SSSSEEYQKVW_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MSMS	A375_MHC_IP_R1	1	665.2271118164062	2	665.301507	1328.58846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.075	1	45.075	44.575	45.575	0								0	0	0	0.16187	1	15757	15757		8.9762	2.7705	1				51453	1301	37387	37690	50250	50250					-0.06269023640970772
SSSSESNGSN	10	Unmodified	_SSSSESNGSN_					0	0	0			REV__nc|ENSG00000147905|Q8N3Z6-2|ZCCHC7	REV__nc|ENSG00000147905|Q8N3Z6-2|ZCCHC7	MSMS	A375_MHC_IP_R2	2	478.1900939941406	2	478.1836	954.352647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.864	1	51.618	51.118	52.118	0.75406								0	0	0	0.15207	1	19134	19134		13.906	1.6654	1		+		51454	19612	37388	37691	50251	50251					-0.1263553576554841
SSSSGSTT	8	Unmodified	_SSSSGSTT_					0	0	0			REV__ENST00000333646.10_2_X:70360540-70362186:+|nuORF	REV__ENST00000333646.10_2_X:70360540-70362186:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	713.693115234375	1	713.294804	712.287527	-0.94078	-0.00067105	-0.54353	-0.0003877	-1.4843	-0.0010588	713.2943019921144	145.3	0.14178	145.3	145.23	145.37	0					15	9	2	0	0	0	0.77861	1	55697	55697		0	0	1	406100	+		51455	23647	37389	37692	50252	50252					-0.08012485500773892
SSSSGSTT	8	Unmodified	_SSSSGSTT_					0	0	0			REV__ENST00000333646.10_2_X:70360540-70362186:+|nuORF	REV__ENST00000333646.10_2_X:70360540-70362186:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	713.693603515625	1	713.294804	712.287527	-0.56036	-0.0003997	-0.61158	-0.00043624	-1.1719	-0.00083594	713.2941138310775	145.3	0.15283	145.33	145.27	145.42	0.021408					15	10	2	0	0	0	0.77861	1	56739	56739		0	0	1	356140	+		51456	23647	37389	37692	50253	50253					-0.08012485500773892
SSSSGSTT	8	Unmodified	_SSSSGSTT_					0	0	0			REV__ENST00000333646.10_2_X:70360540-70362186:+|nuORF	REV__ENST00000333646.10_2_X:70360540-70362186:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	713.294804	712.287527	-0.94078	-0.00067105	-0.54353	-0.0003877	-1.4843	-0.0010588	713.2943019921144	145.3	0.14178	145.3	145.23	145.37	0	-0.015527	2.1554E-05	NaN	0	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	406100	+		51457	23647	37389	37692							-0.08012485500773892
SSSSGSTT	8	Unmodified	_SSSSGSTT_					0	0	0			REV__ENST00000333646.10_2_X:70360540-70362186:+|nuORF	REV__ENST00000333646.10_2_X:70360540-70362186:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	713.294804	712.287527	-0.56036	-0.0003997	-0.61158	-0.00043624	-1.1719	-0.00083594	713.2941138310775	145.3	0.15283	145.33	145.27	145.42	0.021408	0.015527	-2.6985E-05	NaN	0	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356140	+		51458	23647	37389	37692							-0.08012485500773892
SSSSSSSH	8	Unmodified	_SSSSSSSH_					0	0	0		ENSG00000172493|ENST00000395146|AFF1;nc|ENSG00000172493|P51825-3|AFF1;nc|ENSG00000172493|P51825|AFF1;ENST00000503369.1_1_4:88036121-88046296:+|nuORF;ENST00000474112.5_1_3:63898274-63982174:+|nuORF;ENSG00000163635|ENST00000674280|ATXN7;nc|ENSG00000163635|O15265-2|ATXN7;nc|ENSG00000163635|O15265-3|ATXN7	REV__nc|ENSG00000146067|Q96PV7|FAM193B;ENST00000474112.5_1_3:63898274-63982174:+|nuORF;REV__ENSG00000124766|ENST00000244745|SOX4;REV__ENSG00000163635|ENST00000674280|ATXN7	ENST00000474112.5_1_3:63898274-63982174:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	765.3778686523438	1	765.300952	764.293675	-0.44722	-0.00034226	-3.1296	-0.0023951	-3.5768	-0.0027373	765.299080325164	118.53	0.25352	118.53	118.42	118.68	0					5	4	2	0	0	0	0.77702	1	43698	43698		5.7604	1.0044	1	4644800			51459	6698;19514;18322;20391	37390	37693	50254	50254					-0.09789967269227873
SSSSTSSS	8	Unmodified	_SSSSTSSS_					0	0	0		ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;nc|ENSG00000173641|Q9UBY9-3|HSPB7;nc|ENSG00000021645|Q9HDB5|NRXN3;ENST00000479510.2_1_6:33387852-33406697:+|nuORF;nc|ENSG00000290292|Q8IX15-3|HOMEZ;nc|ENSG00000290292|Q8IX15|HOMEZ;nc|ENSG00000021645|Q9HDB5-4|NRXN3;nc|ENSG00000021645|Q9HDB5-2|NRXN3;nc|ENSG00000021645|Q9HDB5-3|NRXN3;PAX8|p.P321S|1|0.16|ENSG00000125618|chr2:113235520-113235520|G/A|missense_variant;DDIT4|p.A145Gfs*50|1|0.9|ENSG00000168209|chr10:72274916-72274917|-/G|frameshift_variant;nc|ENSG00000173641|Q9UBY9-2|HSPB7;ENSG00000173641|ENST00000311890|HSPB7;ENST00000471240.1_1_10:74033815-74034322:+|nuORF;ENST00000552300.1_1_12:78574665-78583766:+|nuORF;ENST00000442459.2_1_1:16344254-16344485:-|nuORF;ENSG00000173894|ENST00000310942|CBX2;ENSG00000100941|ENST00000216832|PNN;ENSG00000075539|ENST00000358350|FRYL;ENST00000509538.5_1_4:185573199-185578558:+|nuORF;ENSG00000073910|ENST00000542859|FRY;nc|ENSG00000067798|Q8IVL0-3|NAV3;nc|ENSG00000067798|Q8IVL0-2|NAV3;ENSG00000067798|ENST00000397909|NAV3;ENSG00000168209|ENST00000307365|DDIT4;ENSG00000205927|ENST00000382357|OLIG2	ENSG00000177200|ENST00000447540|CHD9;ENSG00000173894|ENST00000310942|CBX2;ENSG00000100941|ENST00000216832|PNN;ENSG00000075539|ENST00000358350|FRYL;REV__ENSG00000067798|ENST00000397909|NAV3;REV__nc|ENSG00000177200|Q3L8U1-2|CHD9;REV__nc|ENSG00000160271|Q12967-6|RALGDS;ENST00000509538.5_1_4:185573199-185578558:+|nuORF;ENSG00000073910|ENST00000542859|FRY;nc|ENSG00000067798|Q8IVL0-3|NAV3;ENSG00000168209|ENST00000307365|DDIT4;REV__ENSG00000157540|ENST00000647188|DYRK1A;ENSG00000205927|ENST00000382357|OLIG2;REV__nc|ENSG00000052795|Q9P278-2|FNIP2;REV__ENSG00000100941|ENST00000216832|PNN	ENSG00000073910|ENST00000542859|FRY	MULTI-MSMS	A375_MHC_IP_R2	2	729.6883544921875	1	729.289718	728.282442	-0.61271	-0.00044684	-0.57794	-0.00042149	-1.1907	-0.00086833	729.2891776204535	144.76	0.28932	144.78	144.69	144.98	0.021408					8	6	2	0	0	0	0.77861	1	56539	56539		0	0	1	1606400			51460	1572;8069;1612;16534;21445;7273;2236;20156;7837;12892;1444;20034;9534;16393;17131	37391	37694	50255	50255					-0.09256789363371354
SSSTCSDFDY	10	Unmodified	_SSSTCSDFDY_					0	0	0			REV__SERTAD2|p.P260S|1|0.29|ENSG00000179833|chr2:64636094-64636094|G/A|missense_variant	REV__SERTAD2|p.P260S|1|0.29|ENSG00000179833|chr2:64636094-64636094|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	556.5966796875	2	556.197861	1110.38117	-1.2676	-0.00070505	-1.3463	-0.0007488	-2.6139	-0.0014538	556.1975504693957	52.749	0.60888	53.5	53.233	53.842	0.75105					19	11	2	0	0	0	0.33603	1	19898	19898		37.974	8.8924	1	6437600	+		51461	27945	37392	37695	50256	50256					-0.16960554180627696
SSSTCSDFDY	10	Unmodified	_SSSTCSDFDY_					0	0	0			REV__SERTAD2|p.P260S|1|0.29|ENSG00000179833|chr2:64636094-64636094|G/A|missense_variant	REV__SERTAD2|p.P260S|1|0.29|ENSG00000179833|chr2:64636094-64636094|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	556.197861	1110.38117	-1.2676	-0.00070505	-1.3463	-0.0007488	-2.6139	-0.0014538	556.1975504693957	52.749	0.60888	53.5	53.233	53.842	0.75105	0.093576	0.00026963	NaN	37.974	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6437600	+		51462	27945	37392	37695							-0.16960554180627696
SSSTLVTCVW	10	Carbamidomethyl (C)	_SSSTLVTC(Carbamidomethyl (C))VW_	SSSTLVTC(1)VW		SSSTLVTC(61)VW		0	1	0		ENST00000419038.2_1_2:63870633-63870933:-|nuORF	ENST00000419038.2_1_2:63870633-63870933:-|nuORF	ENST00000419038.2_1_2:63870633-63870933:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	570.6723022460938	2	570.273706	1138.53286	-0.31011	-0.00017685	2.9323	0.0016722	2.6222	0.0014954	570.2753775481672	48.36	1.0118	49.117	48.729	49.741	0.75736					54	19	3	0	0	0	0.11068	1	18275	18275		61.357	15.618	1	17567000			51463	11714	37393	37696	50257	50257	56				-0.030865283622688366
SSSTVSSTVML	11	Unmodified	_SSSTVSSTVML_					0	0	0			REV__ENST00000379480.8_1_13:41834886-41835027:-|nuORF	REV__ENST00000379480.8_1_13:41834886-41835027:-|nuORF	MSMS	A375_MHC_IP_R2	2	549.6312255859375	2	549.770997	1097.52744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.278	1	85.018	84.518	85.518	0.73962								0	0	0	0.16191	1	32036	32036		8.7454	0.83525	1		+		51464	24200	37394	37697	50258	50258					-0.017422519447336526
SSSVLPKAAF	10	Unmodified	_SSSVLPKAAF_					0	0	0		nc|ENSG00000129422|Q9ULD2-5|MTUS1	nc|ENSG00000129422|Q9ULD2-5|MTUS1	nc|ENSG00000129422|Q9ULD2-5|MTUS1	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1608581542969	2	503.782025	1005.5495	-0.96409	-0.00048569	-0.80247	-0.00040427	-1.7666	-0.00088996	503.7829039699114	60.911	1.0174	61.656	60.801	61.819	0.74503					24	19	2	0	0	0	0.78945	1	22827	22827		19.257	2.3147	1	1901900			51465	14596	37395	37698	50259	50259					0.04694340585979262
SSSVLPKAAF	10	Unmodified	_SSSVLPKAAF_					0	0	0		nc|ENSG00000129422|Q9ULD2-5|MTUS1	nc|ENSG00000129422|Q9ULD2-5|MTUS1	nc|ENSG00000129422|Q9ULD2-5|MTUS1	MULTI-MATCH	A375_MHC_IP_R1	1		2	503.782025	1005.5495	-0.35004	-0.00017634	-2.4748	-0.0012467	-2.8248	-0.0014231	504.28154271281795	61.725	0.46003	61.725	61.585	62.046	0	0.034441	-0.00047225	NaN	19.257	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2593100			51466	14596	37395	37698							0.04694340585979262
SSSVQKSF	8	Unmodified	_SSSVQKSF_					0	0	0			REV__ENST00000565356.5_1_16:68349816-68386396:+|nuORF	REV__ENST00000565356.5_1_16:68349816-68386396:+|nuORF	MSMS	A375_MHC_IP_R2	2	435.14202880859375	2	435.2218	868.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.865	1	41.64	41.14	42.14	0.77451								0	0	0	0.16876	1	15146	15146		9.3474	0	1		+		51467	18666	37396	37699	50260	50260					-0.010430674076133073
SSSYERSGSY	10	Unmodified	_SSSYERSGSY_					0	0	0		CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;nc|ENSG00000167258|Q9NYV4-3|CDK12	CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant	CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	561.107177734375	2	561.738542	1121.46253	-0.37766	-0.00021214	-0.12014	-6.749E-05	-0.4978	-0.00027963	561.738437618055	28.533	0.35553	28.533	28.339	28.694	0					10	6	2	0	0	0	0.92514	1	8786	8786		4.897	1.6157	1	2237800			51468	351	37397	37700	50261	50261					-0.09334110426357256
SSSYREAVF	9	Unmodified	_SSSYREAVF_					0	0	0		ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1767578125	2	523.251089	1044.48762	-0.33241	-0.00017393	-0.31493	-0.00016479	-0.64734	-0.00033872	523.2509223335172	42.562	0.55565	42.562	42.336	42.891	0					27	10	3	0	0	0	0.32966	1	14803	14803		49.527	35.621	1	18172000			51469	5012	37398	37701	50262	50262					-0.032840108331583906
SSSYREAVF	9	Unmodified	_SSSYREAVF_					0	0	0		ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1766967773438	2	523.251089	1044.48762	-0.56631	-0.00029632	-0.42758	-0.00022373	-0.99389	-0.00052005	523.2509148719316	41.771	0.61264	42.546	42.3	42.913	0.77451					30	11	3	0	0	0	0.23313	1	15546	15546		49.527	31.381	1	17265000			51470	5012	37398	37701	50263	50263					-0.032840108331583906
SSTASWPGTH	10	Unmodified	_SSTASWPGTH_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.K10017Ifs*3|1|0.07|ENSG00000181143|chr19:8946720-8946721|-/A|frameshift_variant;MUC16|p.L10196Yfs*32|1|0.2|ENSG00000181143|chr19:8946183-8946183|A/-|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	A375_MHC_IP_R2	2	516.132568359375	2	515.733063	1029.45157	-1.1612	-0.00059887	0.17481	9.0155E-05	-0.9864	-0.00050872	515.7331435181245	26.423	1.119	27.083	26.347	27.466	0.65992					30	21	2	0	0	0	0.55789	1	8876	8876		24.021	0	1	3578100			51471	8335	37399	37702	50264	50264					-0.06197468009986551
SSTDPEALHY	10	Unmodified	_SSTDPEALHY_					0	0	0		nc|ENSG00000196526|Q8N556|AFAP1;ENSG00000196526|ENST00000420658|AFAP1;ENST00000508415.1_1_4:7790587-7795535:-|nuORF;ENST00000513842.1_1_4:7765494-7800689:-|nuORF	nc|ENSG00000196526|Q8N556|AFAP1	nc|ENSG00000196526|Q8N556|AFAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	560.1648559570312	2	560.251286	1118.48802	-0.10149	-5.6862E-05	0.44818	0.00025109	0.34668	0.00019423	560.2511458662922	38.871	0.25352	38.871	38.679	38.933	0					7	4	2	0	0	0	0.61429	1	13238	13238		30.637	19.813	1	921120			51472	9053	37400	37703	50265	50265					-0.06648635903957256
SSTEERDEPAY	11	Unmodified	_SSTEERDEPAY_					0	0	0		MAP3K4|p.P1253S|1|0.7|ENSG00000085511|chr6:161101974-161101974|C/T|missense_variant	MAP3K4|p.P1253S|1|0.7|ENSG00000085511|chr6:161101974-161101974|C/T|missense_variant	MAP3K4|p.P1253S|1|0.7|ENSG00000085511|chr6:161101974-161101974|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	429.1063232421875	3	428.517723	1282.53134	-0.46889	-0.00020093	0.90854	0.00038933	0.43965	0.0001884	428.5184712199914	36.657	0.25423	36.657	36.541	36.795	0					5	4	2	0	0	0	0.99606	1	12329	12329		1.3296	0	1	884950			51473	14350	37401	37704	50266	50266					-0.09862490917294053
SSTGEVLFDAK	11	Unmodified	_SSTGEVLFDAK_					0	0	0			REV__CMTR1|p.S75F|1|0.82|ENSG00000137200|chr6:37444089-37444089|C/T|missense_variant	REV__CMTR1|p.S75F|1|0.82|ENSG00000137200|chr6:37444089-37444089|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	577.6898803710938	2	577.290411	1152.56627	0.028787	1.6619E-05	-0.52095	-0.00030074	-0.49217	-0.00028412	577.2901312452	43.915	0.75687	44.684	44.278	45.035	0.7691					37	14	3	0	0	0	0.16898	1	16296	16296		47.594	3.6125	1	28284000	+		51474	15805	37402	37705	50267	50267					-0.003912033187361885
SSTGGCCC	8	Unmodified	_SSTGGCCC_					0	0	0			REV__ENST00000225276.9_1_17:74570494-74574884:-|nuORF	REV__ENST00000225276.9_1_17:74570494-74574884:-|nuORF	MSMS	A375_MHC_IP_R1	1	359.1679382324219	2	359.103667	716.192781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.102	1	18.102	17.602	18.602	0								0	0	0	0.16876	1	4294	4294		0	0	1		+		51475	23058	37403	37706	50268	50268					-0.17666781839602663
SSTKSKDL	8	Unmodified	_SSTKSKDL_					0	0	0		nc|ENSG00000142731|O00444-3|PLK4;nc|ENSG00000142731|O00444-2|PLK4;ENSG00000142731|ENST00000270861|PLK4	nc|ENSG00000142731|O00444-3|PLK4	nc|ENSG00000142731|O00444-3|PLK4	MSMS	A375_MHC_IP_R2	2	433.2852783203125	2	433.234907	864.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.697	1	99.457	98.957	99.957	0.75977								0	0	0	0.16876	1	37440	37440		5.7604	0	1				51476	5330	37404	37707	50269	50269					0.0176120176384984
SSTLISHERVH	11	Unmodified	_SSTLISHERVH_					0	0	0		nc|ENSG00000186272|P17021-3|ZNF17;ENST00000602050.1_1_19:57930944-57932846:+|nuORF;nc|ENSG00000186272|P17021|ZNF17;ENSG00000186272|ENST00000307658|ZNF17	nc|ENSG00000186272|P17021-3|ZNF17	nc|ENSG00000186272|P17021-3|ZNF17	MSMS	A375_MHC_IP_R2	2	422.6375427246094	3	422.558076	1264.6524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.344	1	27.004	26.504	27.504	0.65992								0	0	0	0.1615	1	8894	8894		10.899	1.1347	1				51477	8737	37405	37708	50270	50270					0.03065801306661342
SSTNALRQL	9	Unmodified	_SSTNALRQL_					0	0	0		ENSG00000125870|ENST00000246071|SNRPB2;ENST00000478522.1_1_20:16710709-16713038:+|nuORF	ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	MULTI-SECPEP	A375_MHC_IP_R1	1	495.6722106933594	2	495.272355	988.530158	-0.40516	-0.00020067	-0.57987	-0.0002872	-0.98504	-0.00048786	495.2717586634111	34.628	0.86076	34.628	34.203	35.064	0					38	16	4	0	0	0	0.010462	1	11418	11418		145.13	55.729	1	11172000			51478	4002	37406	37709	50271	50271					0.035433842950737926
SSTNALRQL	9	Unmodified	_SSTNALRQL_					0	0	0		ENSG00000125870|ENST00000246071|SNRPB2;ENST00000478522.1_1_20:16710709-16713038:+|nuORF	ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	MULTI-SECPEP	A375_MHC_IP_R2	2	495.6719055175781	2	495.272355	988.530158	-0.97026	-0.00048054	-0.42982	-0.00021288	-1.4001	-0.00069342	495.2717777043189	33.818	1.0146	34.57	34.146	35.16	0.75225					38	19	3	0	0	0	0.011405	1	12128	12128		99.755	45.922	1	10327000			51479	4002	37406	37709	50272	50272					0.035433842950737926
SSTPHNVSW	9	Unmodified	_SSTPHNVSW_					0	0	0		ENST00000534356.1_1_11:104817674-104819389:-|nuORF;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9|CASP12;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000137757|P51878-2|CASP5;ENSG00000196954|ENST00000444739|CASP4;ENSG00000137757|ENST00000260315|CASP5;nc|ENSG00000137757|P51878-5|CASP5	ENST00000534356.1_1_11:104817674-104819389:-|nuORF	ENST00000534356.1_1_11:104817674-104819389:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	508.13519287109375	2	507.735606	1013.45666	-0.3897	-0.00019786	-0.30481	-0.00015476	-0.69451	-0.00035263	507.7354065309363	33.419	0.55787	33.419	33.19	33.748	0					32	10	4	0	0	0	0.011418	1	10887	10887		103.82	21.294	1	49321000			51480	4909	37407	37710	50273	50273					-0.0495316414737772
SSTPHNVSW	9	Unmodified	_SSTPHNVSW_					0	0	0		ENST00000534356.1_1_11:104817674-104819389:-|nuORF;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9|CASP12;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000137757|P51878-2|CASP5;ENSG00000196954|ENST00000444739|CASP4;ENSG00000137757|ENST00000260315|CASP5;nc|ENSG00000137757|P51878-5|CASP5	ENST00000534356.1_1_11:104817674-104819389:-|nuORF	ENST00000534356.1_1_11:104817674-104819389:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	508.69244384765625	2	507.735606	1013.45666	-0.80067	-0.00040653	-0.054016	-2.7426E-05	-0.85469	-0.00043395	507.7355412457048	32.706	0.61105	33.443	33.162	33.773	0.73692					35	11	4	0	0	0	0.19747	1	11638	11638		38.176	0.20157	1	51375000			51481	4909	37407	37710	50274	50274					-0.0495316414737772
SSTRLRPTW	9	Unmodified	_SSTRLRPTW_					0	0	0		ENST00000438976.6_1_1:156568032-156568068:-|nuORF	ENST00000438976.6_1_1:156568032-156568068:-|nuORF	ENST00000438976.6_1_1:156568032-156568068:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	368.9367370605469	3	368.536724	1102.58834	0.21577	7.9518E-05	0.11374	4.1917E-05	0.32951	0.00012143	368.5367416742644	31.992	0.40518	32.729	32.555	32.96	0.73691					11	7	2	0	0	0	0.75214	1	11379	11379		11.518	7.9308	1	2353100			51482	11955	37408	37711	50275	50275					0.04115065940391105
SSTRLRPTW	9	Unmodified	_SSTRLRPTW_					0	0	0		ENST00000438976.6_1_1:156568032-156568068:-|nuORF	ENST00000438976.6_1_1:156568032-156568068:-|nuORF	ENST00000438976.6_1_1:156568032-156568068:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	368.536724	1102.58834	0.066854	2.4638E-05	-0.10617	-3.9129E-05	-0.039321	-1.4491E-05	368.5366551203111	32.861	0.40338	32.861	32.535	32.938	0	0.066162	-7.5176E-05	NaN	11.518	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2639600			51483	11955	37408	37711							0.04115065940391105
SSTTVKVF	8	Unmodified	_SSTTVKVF_					0	0	0		ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96	ENSG00000153283|ENST00000352690|CD96	ENSG00000153283|ENST00000352690|CD96	MULTI-SECPEP	A375_MHC_IP_R1	1	435.14215087890625	2	434.742368	867.470183	-0.49169	-0.00021376	0.78292	0.00034037	0.29123	0.00012661	434.742606703678	41.633	0.46049	41.633	41.368	41.828	0					14	8	2	0	0	0	0.55873	1	14388	14388		49.933	6.0747	1	2659300			51484	6023	37409	37712	50276	50276					0.0311469363185779
SSTTVKVF	8	Unmodified	_SSTTVKVF_					0	0	0		ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96	ENSG00000153283|ENST00000352690|CD96	ENSG00000153283|ENST00000352690|CD96	MULTI-SECPEP	A375_MHC_IP_R2	2	435.14202880859375	2	434.742368	867.470183	-0.45179	-0.00019641	0.19244	8.3664E-05	-0.25935	-0.00011275	434.7427908776136	40.749	0.51006	41.524	41.335	41.845	0.77451					24	9	4	0	0	0	0.84294	1	15146	15146		37.974	5.6685	1	3087100			51485	6023	37409	37712	50277	50277					0.0311469363185779
SSVDVECRE	9	Unmodified	_SSVDVECRE_					0	0	0			REV__nc|ENSG00000134376|P82279-2|CRB1	REV__nc|ENSG00000134376|P82279-2|CRB1	MSMS	A375_MHC_IP_R2	2	512.162353515625	2	512.224214	1022.43387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.941	1	51.695	51.195	52.195	0.75406								0	0	0	0.15283	1	19163	19163		16.942	0	1		+		51486	27234	37410	37713	50278	50278					-0.07644551327155114
SSVGYFGGSSI	11	Unmodified	_SSVGYFGGSSI_					0	0	0			REV__nc|ENSG00000074219|Q15562-3|TEAD2	REV__nc|ENSG00000074219|Q15562-3|TEAD2	MULTI-MSMS	A375_MHC_IP_R1	1	530.675048828125	2	530.750921	1059.48729	-0.62391	-0.00033114	0.063679	3.3797E-05	-0.56023	-0.00029734	530.7509212518034	34.175	0.91159	34.175	33.848	34.759	0					53	17	5	0	0	0	0.43635	1	11443	11443		36.127	12.106	1	84398000	+		51487	16632	37411	37714	50279	50279					-0.04007430552974256
SSVPGVRLL	9	Unmodified	_SSVPGVRLL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R1	1	464.68450927734375	2	464.284734	926.554916	-0.065816	-3.0557E-05	-0.28071	-0.00013033	-0.34653	-0.00016089	464.28461039056197	70.315	1.733	70.315	69.882	71.615	0					105	33	5	0	0	0	0.040308	1	25451	25451		68.081	24.222	1	250330000			51488	1093	37412	37715	50280	50280					0.0887006416847953
SSVPGVRLL	9	Unmodified	_SSVPGVRLL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R2	2	464.6839904785156	2	464.284734	926.554916	-0.50736	-0.00023556	-0.18594	-8.6331E-05	-0.69331	-0.00032189	464.28465102498035	69.322	2.0309	70.056	69.574	71.605	0.73421					108	39	5	0	0	0	0.02559	2	26201	26201;26428		78.728	28.795	1	306810000			51489	1093	37412	37715	50281;50282	50281					0.0887006416847953
SSVRVATIKV	10	Unmodified	_SSVRVATIKV_					0	0	0			REV__nc|ENSG00000139364|Q14DG7|TMEM132B	REV__nc|ENSG00000139364|Q14DG7|TMEM132B	MULTI-SECPEP	A375_MHC_IP_R2	2	354.5961608886719	3	353.888874	1058.64479	-0.6617	-0.00023417	3.2093	0.0011357	2.5476	0.00090156	353.8900294342183	25.255	0.66191	25.898	25.668	26.33	0.64368					19	12	2	0	0	0	0.93041	1	8543	8543		11.518	5.7344	1	3843100	+		51490	19154	37413	37716	50283	50283					0.11781693777038527
SSVTVTRSY	9	Unmodified	_SSVTVTRSY_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156108227-156108894:+|nuORF	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-SECPEP	A375_MHC_IP_R2	2	500.65814208984375	2	500.258914	998.503274	-0.99747	-0.00049899	-0.15012	-7.5097E-05	-1.1476	-0.00057409	500.2587015759533	25.101	0.45981	25.744	25.568	26.028	0.64368					12	8	2	0	0	0	0.69381	1	8388	8388		7.1017	1.8048	1	3207600			51491	6442	37414	37717	50284	50284					0.003962756839086978
SSVVIDRRF	9	Unmodified	_SSVVIDRRF_					0	0	0		ENSG00000073711|ENST00000264977|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	MULTI-MSMS	A375_MHC_IP_R1	1	360.60498046875	3	360.204974	1077.59309	0.095252	3.431E-05	-0.25772	-9.2831E-05	-0.16247	-5.8521E-05	360.2049256943629	36.171	0.55949	36.171	35.83	36.389	0					17	7	3	0	0	0	0.11629	1	12098	12098		37.075	13.285	1	3719100			51492	1567	37415	37718	50285	50285					0.057399500831252226
SSVVLSYSS	9	Unmodified	_SSVVLSYSS_					0	0	0		ENST00000322342.3_1_18:72911429-72911633:-|nuORF	ENST00000322342.3_1_18:72911429-72911633:-|nuORF	ENST00000322342.3_1_18:72911429-72911633:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	464.6846008300781	2	464.73474	927.454927	-0.16256	-7.5549E-05	-0.019423	-9.0266E-06	-0.18199	-8.4576E-05	464.7349593594717	70.813	0.4595	70.813	70.494	70.953	0					10	8	2	0	0	0	0.43185	1	25664	25664		23.148	8.5667	1	952350			51493	10706	37416	37719	50286	50286					-0.011702179559961223
SSVYSRHSY	9	Unmodified	_SSVYSRHSY_					0	0	0		ABLIM1|p.P459S|1|0.25|ENSG00000099204|chr10:114465764-114465764|G/A|missense_variant	ABLIM1|p.P459S|1|0.25|ENSG00000099204|chr10:114465764-114465764|G/A|missense_variant	ABLIM1|p.P459S|1|0.25|ENSG00000099204|chr10:114465764-114465764|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	543.2267456054688	2	543.254163	1084.49377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.362	1	34.114	33.614	34.614	0.75225								0	0	0	0.15486	1	11947	11947		12.532	1.7076	1				51494	24	37417	37720	50287	50287					-0.04509492601596321
SSWRDGRLF	9	Unmodified	_SSWRDGRLF_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R1	1	375.5931701660156	3	375.192957	1122.55704	0.52578	0.00019727	-0.43692	-0.00016393	0.088863	3.3341E-05	375.1927500985257	54.175	0.70606	54.175	53.861	54.567	0					42	13	4	0	0	0	0.06083	1	19285	19285		47.732	27.745	1	16114000			51495	14788	37418	37721	50288	50288					0.0006649290628502058
SSWRDGRLF	9	Unmodified	_SSWRDGRLF_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R2	2	375.92724609375	3	375.192957	1122.55704	-0.28352	-0.00010637	0.23239	8.7192E-05	-0.051127	-1.9182E-05	375.1930051716208	53.338	0.81806	54.089	53.739	54.557	0.75105					42	15	4	0	0	0	0.27742	1	20084	20084		40.725	14.704	1	18575000			51496	14788	37418	37721	50289	50289					0.0006649290628502058
SSWRDGRLF	9	Unmodified	_SSWRDGRLF_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R2	2	562.6854858398438	2	562.285797	1122.55704	-1.1497	-0.00064649	0.53331	0.00029987	-0.61644	-0.00034661	562.286061431823	53.336	0.66512	54.087	53.739	54.404	0.75105					24	12	3	0	0	0	0.37663	1	20110	20110		29.841	8.0939	1	7181200			51497	14788	37418	37721	50290	50290					0.0006649290628502058
SSWRSVLS	8	Unmodified	_SSWRSVLS_					0	0	0			REV__ENST00000520810.5_1_8:42188602-42189049:+|nuORF	REV__ENST00000520810.5_1_8:42188602-42189049:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	461.64288330078125	2	461.243067	920.47158	-0.30135	-0.00013899	0.23319	0.00010756	-0.068158	-3.1437E-05	461.24309717364747	41.968	0.35484	41.968	41.828	42.183	0					11	6	2	0	0	0	0.70629	1	14553	14553		32.786	0.4802	1	1973500	+		51498	25706	37419	37722	50291	50291					0.00816327720622212
SSWRSVLS	8	Unmodified	_SSWRSVLS_					0	0	0			REV__ENST00000520810.5_1_8:42188602-42189049:+|nuORF	REV__ENST00000520810.5_1_8:42188602-42189049:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	461.243067	920.47158	-0.30135	-0.00013899	0.23319	0.00010756	-0.068158	-3.1437E-05	461.24309717364747	41.968	0.35484	41.968	41.828	42.183	0	0.0094002	-0.00022381	NaN	32.786	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1973500	+		51499	25706	37419	37722							0.00816327720622212
SSWRSVLS	8	Unmodified	_SSWRSVLS_					0	0	0			REV__ENST00000520810.5_1_8:42188602-42189049:+|nuORF	REV__ENST00000520810.5_1_8:42188602-42189049:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	461.243067	920.47158	-0.72091	-0.00033252	0.61466	0.00028351	-0.10625	-4.9009E-05	461.24313218645455	41.175	0.40594	41.95	41.743	42.149	0.77451	-0.0094002	0.00012809	NaN	32.786	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1584000	+		51500	25706	37419	37722							0.00816327720622212
SSYCKSKG	8	Unmodified	_SSYCKSKG_					0	0	0		nc|ENSG00000162571|Q6ZVT0-3|TTLL10;nc|ENSG00000162571|Q6ZVT0-2|TTLL10;ENSG00000162571|ENST00000379289|TTLL10	nc|ENSG00000162571|Q6ZVT0-3|TTLL10	nc|ENSG00000162571|Q6ZVT0-3|TTLL10	MULTI-MSMS	A375_MHC_IP_R1	1	859.795166015625	1	859.397829	858.390553	-0.66225	-0.00056913	-2.6375	-0.0022667	-3.2998	-0.0028358	859.3959669248793	144.1	0.21516	144.1	144.03	144.25	0					6	4	2	0	0	0	0.7779	2	55291	55291;55307		2.5775	0	1	487610			51501	6549	37420	37723	50292;50293	50292					-0.044306963137842104
SSYFDEDNF	9	Unmodified	_SSYFDEDNF_					0	0	0		PTF1A|p.D25N|1|0.42|ENSG00000168267|chr10:23192603-23192603|G/A|missense_variant	PTF1A|p.D25N|1|0.42|ENSG00000168267|chr10:23192603-23192603|G/A|missense_variant	PTF1A|p.D25N|1|0.42|ENSG00000168267|chr10:23192603-23192603|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	562.716552734375	2	562.214369	1122.41418	-0.63876	-0.00035912	1.4325	0.00080535	0.79369	0.00044622	562.2156749174129	66.324	0.55791	66.324	66.022	66.58	0					22	10	3	0	0	0	0.72507	1	24087	24087		4.756	0	1	2249600			51502	15244	37421	37724	50294	50294					-0.142126040662788
SSYGNIRAV	9	Unmodified	_SSYGNIRAV_					0	0	0		ENSG00000141564|ENST00000306801|RPTOR;nc|ENSG00000141564|Q8N122-3|RPTOR;ENST00000577161.5_1_17:78519375-78883449:+|nuORF	ENSG00000141564|ENST00000306801|RPTOR	ENSG00000141564|ENST00000306801|RPTOR	MULTI-SECPEP	A375_MHC_IP_R1	1	484.1535949707031	2	483.753798	965.493044	-0.32556	-0.00015749	0.2108	0.00010197	-0.11476	-5.5516E-05	483.75370455342227	34.123	1.1102	34.123	33.547	34.657	0					39	21	3	0	0	0	0.04395	1	11200	11200		81.89	40.051	1	25394000			51503	5257	37422	37725	50295	50295					0.008917127493418775
SSYGNIRAV	9	Unmodified	_SSYGNIRAV_					0	0	0		ENSG00000141564|ENST00000306801|RPTOR;nc|ENSG00000141564|Q8N122-3|RPTOR;ENST00000577161.5_1_17:78519375-78883449:+|nuORF	ENSG00000141564|ENST00000306801|RPTOR	ENSG00000141564|ENST00000306801|RPTOR	MULTI-SECPEP	A375_MHC_IP_R2	2	484.15362548828125	2	483.753798	965.493044	-0.95193	-0.0004605	0.51812	0.00025064	-0.43381	-0.00020986	483.75385759776054	33.415	0.76069	34.168	33.942	34.702	0.75225					32	14	4	0	0	0	0.070665	1	11944	11944		60.074	14.374	1	24529000			51504	5257	37422	37725	50296	50296					0.008917127493418775
SSYGVAAPVD	10	Unmodified	_SSYGVAAPVD_					0	0	0		nc|ENSG00000110697|O00562-2|PITPNM1;ENSG00000110697|ENST00000356404|PITPNM1;ENST00000527370.5_1_11:67259506-67263940:-|nuORF	nc|ENSG00000110697|O00562-2|PITPNM1	nc|ENSG00000110697|O00562-2|PITPNM1	MULTI-MSMS	A375_MHC_IP_R1	1	484.1535949707031	2	483.232364	964.450176	-0.28952	-0.00013991	-0.018039	-8.7172E-06	-0.30756	-0.00014862	483.2323216875515	33.972	0.8075	33.972	33.597	34.405	0					44	15	5	0	0	0	0.55789	1	11200	11200		24.021	0.87215	1	65229000			51505	2939	37423	37726	50297	50297					-0.03347102098769028
SSYHLLPSLG	10	Unmodified	_SSYHLLPSLG_					0	0	0			REV__TTC31|p.P474S|1|0.1|ENSG00000115282|chr2:74493078-74493078|C/T|missense_variant	REV__TTC31|p.P474S|1|0.1|ENSG00000115282|chr2:74493078-74493078|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	358.9255676269531	3	358.525713	1072.55531	0.038443	1.3783E-05	-0.14303	-5.1279E-05	-0.10459	-3.7496E-05	358.52558859778134	59.069	0.61078	59.069	58.786	59.397	0					29	11	4	0	0	0	0.8125	1	21209	21209		15.739	1.3332	1	10384000	+		51506	28925	37424	37727	50298	50298					0.021934390976639406
SSYSHATYY	9	Unmodified	_SSYSHATYY_					0	0	0			REV__FAM71B|p.M18I|1|0.35|ENSG00000170613|chr5:157166115-157166115|C/T|missense_variant	REV__FAM71B|p.M18I|1|0.35|ENSG00000170613|chr5:157166115-157166115|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	540.1276245117188	2	539.727446	1077.44034	-0.13649	-7.3667E-05	0.37959	0.00020487	0.2431	0.00013121	539.7275707713254	69.401	0.56017	69.401	69.121	69.681	0					16	10	3	0	0	0	0.53367	1	25185	25185		18.146	2.2992	1	1976300	+		51507	21007	37425	37728	50299	50299					-0.09528290104140069
SSYSSDIRQQL	11	Unmodified	_SSYSSDIRQQL_					0	0	0			REV__ENST00000282369.7_1_5:114466570-114469597:-|nuORF	REV__ENST00000282369.7_1_5:114466570-114469597:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1283.60498046875	1	1283.62262	1282.61534	0.45045	0.00057821	-0.8042	-0.0010323	-0.35375	-0.00045408	1283.6219045813905	136.98	0.20526	137.1	136.97	137.17	0.11134					5	3	2	0	0	0	0.73647	1	53758	53758		2.7352	0	1	2045400	+		51508	23325	37426	37729	50300	50300					-0.014659150297575252
SSYSTDQNK	9	Unmodified	_SSYSTDQNK_					0	0	0		ENSG00000182334|ENST00000641167|OR5P3	ENSG00000182334|ENST00000641167|OR5P3	ENSG00000182334|ENST00000641167|OR5P3	MULTI-SECPEP	A375_MHC_IP_R2	2	514.6759643554688	2	515.22781	1028.44107	-1.0776	-0.00055523	2.2725	0.0011709	1.1949	0.00061565	515.7295200050337	61.221	0.6544	61.966	61.769	62.423	0.74503					15	12	2	0	0	0	0.71341	1	23133	23133		18.146	7.3224	1	795680			51509	8400	37427	37730	50301	50301					-0.072014954550923
STAAQFIYSR	10	Unmodified	_STAAQFIYSR_					0	0	0		nc|ENSG00000112339|Q9Y450-2|HBS1L;ENSG00000112339|ENST00000367837|HBS1L	nc|ENSG00000112339|Q9Y450-2|HBS1L;ENSG00000112339|ENST00000367837|HBS1L	nc|ENSG00000112339|Q9Y450-2|HBS1L	MULTI-SECPEP	A375_MHC_IP_R2	2	381.6130065917969	3	381.864617	1142.57202	-0.21637	-8.2623E-05	2.9256	0.0011172	2.7093	0.0010346	382.2000933307427	40.698	0.45823	41.472	41.234	41.692	0.77451					11	8	2	0	0	0	0.91057	1	15008	15008		14.218	2.7235	1	799720			51510	14550;3078	37428	37731	50302	50302					0.006439399836153825
STAGKEPF	8	Unmodified	_STAGKEPF_					0	0	0			REV__ENST00000301332.2_1_8:145699020-145699230:+|nuORF	REV__ENST00000301332.2_1_8:145699020-145699230:+|nuORF	MSMS	A375_MHC_IP_R2	2	418.6370544433594	2	418.711068	835.407583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.504	1	41.278	40.778	41.778	0.77451								0	0	0	0.16876	1	15000	15000		15.847	0	1		+		51511	23425	37429	37732	50303	50303					-0.01670452436337655
STAKEIIQHF	10	Unmodified	_STAKEIIQHF_					0	0	0		ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1;ENST00000396894.8_1_X:48334751-48339908:+|nuORF	ENSG00000068438|ENST00000348411|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	MULTI-SECPEP	A375_MHC_IP_R1	1	392.28021240234375	3	391.880267	1172.61897	-0.032288	-1.2653E-05	0.29688	0.00011634	0.26459	0.00010369	391.880384991148	46.868	0.92142	46.868	46.444	47.366	0					50	17	5	0	0	0	0.02507	1	16452	16452		78.61	45.713	1	17133000			51512	1461	37430	37733	50304	50304					0.0395679953473973
STAKEIIQHF	10	Unmodified	_STAKEIIQHF_					0	0	0		ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1;ENST00000396894.8_1_X:48334751-48339908:+|nuORF	ENSG00000068438|ENST00000348411|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	MULTI-SECPEP	A375_MHC_IP_R2	2	392.2802734375	3	391.880267	1172.61897	-0.13242	-5.1892E-05	0.24013	9.4102E-05	0.10771	4.221E-05	391.88033068864036	46.016	0.86068	46.781	46.453	47.313	0.76519					42	16	4	0	0	0	0.050206	1	17181	17181		66.683	50.408	1	25707000			51513	1461	37430	37733	50305	50305					0.0395679953473973
STAKEIIQHF	10	Unmodified	_STAKEIIQHF_					0	0	0		ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1;ENST00000396894.8_1_X:48334751-48339908:+|nuORF	ENSG00000068438|ENST00000348411|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	MULTI-SECPEP	A375_MHC_IP_R2	2	587.1038208007812	2	587.316763	1172.61897	-0.51504	-0.00030249	0.34636	0.00020343	-0.16868	-9.9066E-05	587.3169320983714	46.014	0.65512	46.779	46.453	47.108	0.76518					31	12	4	0	0	0	0.026407	1	17204	17204		111.31	81.468	1	33454000			51514	1461	37430	37733	50306	50306					0.0395679953473973
STAKEIIQHF	10	Unmodified	_STAKEIIQHF_					0	0	0		ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1;ENST00000396894.8_1_X:48334751-48339908:+|nuORF	ENSG00000068438|ENST00000348411|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	587.316763	1172.61897	-0.44483	-0.00026125	0.47859	0.00028108	0.033763	1.983E-05	587.3169432320658	46.903	0.82047	46.903	46.596	47.416	0	0.061938	7.8716E-05	NaN	111.31	44	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26527000			51515	1461	37430	37733							0.0395679953473973
STAKPKLL	8	Unmodified	_STAKPKLL_					0	0	0		ENST00000434837.7_1_6:37665242-37665689:-|nuORF	ENST00000434837.7_1_6:37665242-37665689:-|nuORF	ENST00000434837.7_1_6:37665242-37665689:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	429.2911682128906	2	429.276378	856.538203	-0.033415	-1.4344E-05	-0.025934	-1.1133E-05	-0.059349	-2.5477E-05	429.27635060779454	56.114	0.40572	56.114	55.941	56.347	0					13	7	2	0	0	0	0.68907	1	20143	20143		38.151	3.9638	1	1161700			51516	11903	37431	37734	50307	50307					0.1041956328251672
STAKPSKI	8	Unmodified	_STAKPSKI_					0	0	0		nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;ENST00000466429.5_1_6:56323805-56328761:-|nuORF	nc|ENSG00000151914|Q03001|DST	nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	A375_MHC_IP_R2	2	415.6423034667969	2	416.25036	830.486168	-0.085337	-3.5521E-05	-0.28406	-0.00011824	-0.3694	-0.00015376	416.2501775366523	44.583	0.457	45.352	45.086	45.543	0.76909					14	8	2	0	0	0	0.77651	1	16573	16573		26.884	0	1	3568200			51517	5934	37432	37735	50308	50308					0.06414399868754117
STAPGWEPPDD	11	Unmodified	_STAPGWEPPDD_					0	0	0		nc|ENSG00000157657|Q5T7W0-4|ZNF618;ENSG00000157657|ENST00000374126|ZNF618	nc|ENSG00000157657|Q5T7W0-4|ZNF618	nc|ENSG00000157657|Q5T7W0-4|ZNF618	MULTI-MSMS	A375_MHC_IP_R1	1	585.6636962890625	2	586.248743	1170.48293	-0.32677	-0.00019157	-0.22593	-0.00013245	-0.55269	-0.00032402	586.2485259003615	77.04	1.0179	77.04	76.673	77.69	0					51	19	4	0	0	0	0.69231	1	28032	28032		16.149	0.30192	1	9432600			51518	6259	37433	37736	50309	50309					-0.09548939766546027
STASKKIP	8	Unmodified	_STASKKIP_					0	0	0			REV__MSL3|p.E296K|1|0.16|ENSG00000005302|chrX:11763916-11763916|G/A|missense_variant	REV__MSL3|p.E296K|1|0.16|ENSG00000005302|chrX:11763916-11763916|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	416.6501159667969	2	416.25036	830.486168	0.53756	0.00022376	-0.30184	-0.00012564	0.23573	9.8122E-05	416.25016233851676	45.509	0.45284	45.509	45.234	45.687	0					14	8	2	0	0	0	0.70206	1	15917	15917		34.102	3.8776	1	3953500	+		51519	27042	37434	37737	50310	50310					0.06414399868754117
STASKKIP	8	Unmodified	_STASKKIP_					0	0	0			REV__MSL3|p.E296K|1|0.16|ENSG00000005302|chrX:11763916-11763916|G/A|missense_variant	REV__MSL3|p.E296K|1|0.16|ENSG00000005302|chrX:11763916-11763916|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	416.25036	830.486168	0.53756	0.00022376	-0.30184	-0.00012564	0.23573	9.8122E-05	416.25016233851676	45.509	0.45284	45.509	45.234	45.687	0	0.078203	-8.0018E-06	NaN	34.102	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3953500	+		51520	27042	37434	37737							0.06414399868754117
STATVLRYY	9	Unmodified	_STATVLRYY_					0	0	0			REV__nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3	REV__nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3	MULTI-SECPEP	A375_MHC_IP_R2	2	536.6585693359375	2	537.284931	1072.55531	-0.90764	-0.00048766	0.27616	0.00014838	-0.63148	-0.00033928	537.7869230025282	65.003	0.15322	65.741	65.613	65.766	0.73811					4	2	2	0	0	0	0.73363	1	24599	24599		6.7232	0	1	546920	+		51521	22863	37435	37738	50311	50311					0.021934390976639406
STAWPAKP	8	Unmodified	_STAWPAKP_					0	0	0			REV__ENST00000437879.6_1_1:201182683-201184240:+|nuORF	REV__ENST00000437879.6_1_1:201182683-201184240:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	429.2914123535156	2	429.229428	856.444303	-0.04756	-2.0414E-05	0.11993	5.1478E-05	0.07237	3.1063E-05	429.229316947298	56.029	0.40474	56.029	55.79	56.194	0					10	7	2	0	0	0	0.92636	1	20114	20114		16.942	0	1	1814900	+		51522	24775	37436	37739	50312	50312					0.010338441802332454
STAYFKLPDT	10	Unmodified	_STAYFKLPDT_					0	0	0			REV__nc|ENSG00000162148|Q7Z5V6-2|SAXO4	REV__nc|ENSG00000162148|Q7Z5V6-2|SAXO4	MULTI-SECPEP	A375_MHC_IP_R1	1	381.9290771484375	3	381.529123	1141.56554	0.16345	6.2362E-05	0.2716	0.00010362	0.43505	0.00016599	381.5291642533679	52.972	1.0645	52.972	52.541	53.605	0					63	20	5	0	0	0	0.90513	1	18814	18814		10.899	3.8619	1	29911000	+		51523	20236	37437	37740	50313	50313					0.0004200203222808341
STAYFKLPDT	10	Unmodified	_STAYFKLPDT_					0	0	0			REV__nc|ENSG00000162148|Q7Z5V6-2|SAXO4	REV__nc|ENSG00000162148|Q7Z5V6-2|SAXO4	MULTI-MSMS	A375_MHC_IP_R2	2	381.9291076660156	3	381.529123	1141.56554	-0.42263	-0.00016125	0.2743	0.00010465	-0.14833	-5.6593E-05	381.52917843139477	52.146	1.0158	52.898	52.524	53.54	0.75225					53	19	4	0	0	0	0.6502	1	19595	19595		10.899	0.58372	1	30827000	+		51524	20236	37437	37740	50314	50314					0.0004200203222808341
STCFNGQQY	9	Unmodified	_STCFNGQQY_					0	0	0			REV__ENST00000548182.1_1_14:25443980-25457105:-|nuORF	REV__ENST00000548182.1_1_14:25443980-25457105:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	524.613525390625	2	524.213649	1046.41274	-0.50654	-0.00026553	0.63893	0.00033494	0.13239	6.9401E-05	524.2139871586678	62.846	0.91071	63.589	63.18	64.091	0.74263					42	17	3	0	0	0	0.60101	1	23760	23760		14.838	1.3304	1	18424000	+		51525	26014	37438	37741	50315	50315					-0.10860516636034845
STCFNGQQY	9	Unmodified	_STCFNGQQY_					0	0	0			REV__ENST00000548182.1_1_14:25443980-25457105:-|nuORF	REV__ENST00000548182.1_1_14:25443980-25457105:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	524.613525390625	2	524.213649	1046.41274	-0.50654	-0.00026553	0.63893	0.00033494	0.13239	6.9401E-05	524.2139871586678	62.846	0.91071	63.589	63.18	64.091	0.74263					42	17	3	0	0	0	0.74412	1	23760	23760		14.838	1.3304	1	18424000	+		51526	26014	37438	37741	50316	50316					-0.10860516636034845
STCWRCCCCCC	11	Unmodified	_STCWRCCCCCC_					0	0	0			REV__ENST00000519715.1_1_5:140012405-140013200:-|nuORF	REV__ENST00000519715.1_1_5:140012405-140013200:-|nuORF	MSMS	A375_MHC_IP_R2	2	635.6671142578125	2	635.67477	1269.33499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.37	1	71.104	70.604	71.604	0.73421								0	0	0	0.16354	1	26678	26678		0.30703	0.30703	1		+		51527	25688	37439	37742	50317	50317					-0.2889071974723265
STDAHAFCPR	10	Unmodified	_STDAHAFCPR_					0	0	0			REV__ENST00000530883.1_2_19:56289199-56290240:+|nuORF	REV__ENST00000530883.1_2_19:56289199-56290240:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	553.1475219726562	2	552.74819	1103.48183	-0.36401	-0.00020121	-0.24426	-0.00013501	-0.60827	-0.00033622	552.7477354459936	45.702	0.65881	45.702	45.384	46.043	0					27	12	4	0	0	0	0.50967	1	15994	15994		27.629	0	1	5377200	+		51528	25843	37440	37743	50318	50318					-0.06577432616472834
STDAHAFCPR	10	Unmodified	_STDAHAFCPR_					0	0	0			REV__ENST00000530883.1_2_19:56289199-56290240:+|nuORF	REV__ENST00000530883.1_2_19:56289199-56290240:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	553.1474609375	2	552.74819	1103.48183	-0.87915	-0.00048595	-0.17425	-9.6318E-05	-1.0534	-0.00058227	552.7481747811946	44.973	1.0168	45.742	44.985	46.001	0.7691					28	19	2	0	0	0	0.39599	1	16815	16815		34.402	0	1	4454500	+		51529	25843	37440	37743	50319	50319					-0.06577432616472834
STDDGVQFH	9	Unmodified	_STDDGVQFH_					0	0	0		EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant;EFTUD2|p.S944*|1|0.12|ENSG00000108883|chr17:44851362-44851363|CT/-|frameshift_variant;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;nc|ENSG00000108883|Q15029-2|EFTUD2;ENST00000590367.5_1_17:42931463-42950195:-|nuORF;ENST00000586276.5_1_17:42937766-42940268:-|nuORF	EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	503.9909973144531	2	503.217246	1004.41994	-0.41355	-0.00020811	1.9216	0.00096699	1.5081	0.00075888	503.21713690010245	28.306	0.50406	28.306	28.088	28.592	0					26	9	4	0	0	0	0.24548	1	8770	8770		43.858	29.277	1	5542100			51530	829	37441	37744	50320	50320					-0.08209460763941934
STDDGVQFH	9	Unmodified	_STDDGVQFH_					0	0	0		EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant;EFTUD2|p.S944*|1|0.12|ENSG00000108883|chr17:44851362-44851363|CT/-|frameshift_variant;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;nc|ENSG00000108883|Q15029-2|EFTUD2;ENST00000590367.5_1_17:42931463-42950195:-|nuORF;ENST00000586276.5_1_17:42937766-42940268:-|nuORF	EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	503.6170959472656	2	503.217246	1004.41994	-0.66119	-0.00033272	0.48238	0.00024274	-0.17881	-8.9982E-05	503.2172543331137	27.792	0.45522	28.47	28.251	28.706	0.67857					15	8	3	0	0	0	0.3213	1	9556	9556		24.021	20.739	1	2528600			51531	829	37441	37744	50321	50321					-0.08209460763941934
STDEYYYY	8	Unmodified	_STDEYYYY_					0	0	0		nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3	nc|ENSG00000133657|Q9H7F0|ATP13A3	nc|ENSG00000133657|Q9H7F0|ATP13A3	MSMS	A375_MHC_IP_R1	1	552.1975708007812	2	552.213837	1102.41312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.528	1	99.528	99.028	100.03	0								0	0	0	0.16876	1	36564	36564		10.183	2.2732	1				51532	4521	37442	37745	50322	50322					-0.13398818435166504
STDFDDMDDWD	11	Unmodified	_STDFDDMDDWD_					0	0	0			REV__ENSG00000197299|ENST00000355112|BLM	REV__ENSG00000197299|ENST00000355112|BLM	MSMS	A375_MHC_IP_R2	2	681.2237548828125	2	681.227347	1360.44014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.964	1	35.727	35.227	36.227	0.76338								0	0	0	0.16297	1	12652	12652		3.2813	0	1		+		51533	22277	37443	37746	50323	50323					-0.22566122676971645
STDGLQPVTY	10	Unmodified	_STDGLQPVTY_					0	0	0			REV__ENSG00000154269|ENST00000357639|ENPP3	REV__ENSG00000154269|ENST00000357639|ENPP3	MULTI-MSMS	A375_MHC_IP_R1	1	542.706298828125	2	540.764029	1079.5135	-0.43345	-0.00023439	0.76553	0.00041397	0.33209	0.00017958	540.7638666598448	45.747	1.3159	45.747	44.98	46.295	0					82	25	5	0	0	0	0.66712	1	16027	16027		15.847	0	1	39975000	+		51534	19878	37444	37747	50324	50324					-0.02307161381509104
STDHIPILY	9	Unmodified	_STDHIPILY_					0	0	0		ENSG00000198380|ENST00000357308|GFPT1;nc|ENSG00000198380|Q06210-2|GFPT1	ENSG00000198380|ENST00000357308|GFPT1	ENSG00000198380|ENST00000357308|GFPT1	MULTI-MSMS	A375_MHC_IP_R1	1	530.1792602539062	2	529.779482	1057.54441	-0.53418	-0.000283	0.44584	0.0002362	-0.088337	-4.6799E-05	529.7796407080019	79.548	1.7351	79.548	79.111	80.846	0					90	33	5	0	0	0	0.042197	1	28964	28964		67.344	6.9543	1	159500000			51535	9261	37445	37748	50325	50325					0.017940367234132282
STDHIPILY	9	Unmodified	_STDHIPILY_					0	0	0		ENSG00000198380|ENST00000357308|GFPT1;nc|ENSG00000198380|Q06210-2|GFPT1	ENSG00000198380|ENST00000357308|GFPT1	ENSG00000198380|ENST00000357308|GFPT1	MULTI-MSMS	A375_MHC_IP_R2	2	530.178955078125	2	529.779482	1057.54441	-0.52099	-0.00027601	0.001767	9.361E-07	-0.51923	-0.00027508	529.7793945767507	78.718	1.7265	79.463	79.033	80.759	0.74473					91	33	5	0	0	0	0.03063	1	29813	29813		74.423	23.568	1	130430000			51536	9261	37445	37748	50326	50326					0.017940367234132282
STDINEKCWEM	11	Unmodified	_STDINEKCWEM_					0	0	0			REV__ENSG00000174951|ENST00000645652|FUT1	REV__ENSG00000174951|ENST00000645652|FUT1	MULTI-MSMS	A375_MHC_IP_R1	1	678.7416381835938	2	678.283945	1354.55334	-0.59498	-0.00040356	-0.788	-0.00053449	-1.383	-0.00093805	678.2834002685647	20.131	0.20202	20.131	20.03	20.232	0					6	3	2	0	0	0	0.56199	1	5104	5104		26.268	7.895	1	1349600	+		51537	21316	37446	37749	50327	50327					-0.10975725764751587
STDKAEYTFY	10	Unmodified	_STDKAEYTFY_					0	0	0		ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ;nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	613.174560546875	2	612.774593	1223.53463	-0.38739	-0.00023738	-0.017749	-1.0876E-05	-0.40514	-0.00024826	612.7745384539882	52.516	1.0146	52.516	51.982	52.997	0					57	19	4	0	0	0	0.21482	1	18787	18787		47.732	17.095	1	56206000			51538	7274	37447	37750	50328	50328					-0.06819196072660816
STDKAEYTFY	10	Unmodified	_STDKAEYTFY_					0	0	0		ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ;nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	613.1737060546875	2	612.774593	1223.53463	-0.84015	-0.00051482	0.24609	0.0001508	-0.59407	-0.00036403	612.7746446942429	51.848	0.91468	52.601	52.169	53.083	0.75225					55	17	5	0	0	0	0.39901	1	19442	19442		34.222	6.5929	1	44312000			51539	7274	37447	37750	50329	50329					-0.06819196072660816
STDKFKTDFY	10	Unmodified	_STDKFKTDFY_					0	0	0		ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	A375_MHC_IP_R1	1	418.2677307128906	3	417.867916	1250.58192	0.36644	0.00015312	-0.37214	-0.0001555	-0.0056971	-2.3806E-06	417.86768800542916	42.639	0.55613	42.639	42.386	42.942	0					31	10	4	0	0	0	0.0075204	1	14778	14778		85.729	57.548	1	9770200			51540	7264	37448	37751	50330	50330					-0.03334916801645704
STDKFKTDFY	10	Unmodified	_STDKFKTDFY_					0	0	0		ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	A375_MHC_IP_R1	1	626.6971435546875	2	626.298236	1250.58192	-0.38929	-0.00024381	-0.37055	-0.00023208	-0.75984	-0.00047589	626.2977660137979	42.659	0.45534	42.659	42.436	42.891	0					25	8	5	0	0	0	0.0010098	1	14791	14791		146.68	110.17	1	7007700			51541	7264	37448	37751	50331	50331					-0.03334916801645704
STDKFKTDFY	10	Unmodified	_STDKFKTDFY_					0	0	0		ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	A375_MHC_IP_R2	2	418.2676696777344	3	417.867916	1250.58192	-0.021503	-8.9855E-06	-0.16151	-6.7491E-05	-0.18302	-7.6477E-05	417.8678171878511	41.867	0.45958	42.642	42.453	42.913	0.77451					27	8	4	0	0	0	0.011374	1	15558	15558		98.634	66.017	1	15534000			51542	7264	37448	37751	50332	50332					-0.03334916801645704
STDKFKTDFY	10	Unmodified	_STDKFKTDFY_					0	0	0		ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	A375_MHC_IP_R2	2	626.6973266601562	2	626.298236	1250.58192	-0.77337	-0.00048436	-0.22514	-0.000141	-0.99851	-0.00062537	626.2978294073498	41.908	0.66485	42.683	42.453	43.118	0.77451					22	12	3	0	0	0	2.711E-05	1	15576	15576		158.08	121.57	1	6037700			51543	7264	37448	37751	50333	50333					-0.03334916801645704
STDKLKTLF	9	Unmodified	_STDKLKTLF_					0	0	0		ENST00000554156.5_1_14:77924532-77928597:+|nuORF;ENST00000556963.5_1_14:77924568-77929110:+|nuORF;nc|ENSG00000100591|O95433-2|AHSA1;ENSG00000100591|ENST00000216479|AHSA1	ENST00000554156.5_1_14:77924532-77928597:+|nuORF	ENST00000554156.5_1_14:77924532-77928597:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	527.20263671875	2	526.802957	1051.59136	-0.29593	-0.0001559	-0.48978	-0.00025802	-0.78571	-0.00041392	526.802602531897	39.227	0.3067	39.227	39.033	39.34	0					12	5	3	0	0	0	0.37663	1	13378	13378		36.506	7.4246	1	4814900			51544	2196	37449	37752	50334	50334					0.06762896274517516
STDKLKTLF	9	Unmodified	_STDKLKTLF_					0	0	0		ENST00000554156.5_1_14:77924532-77928597:+|nuORF;ENST00000556963.5_1_14:77924568-77929110:+|nuORF;nc|ENSG00000100591|O95433-2|AHSA1;ENSG00000100591|ENST00000216479|AHSA1	ENST00000554156.5_1_14:77924532-77928597:+|nuORF	ENST00000554156.5_1_14:77924532-77928597:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	527.1900634765625	2	526.802957	1051.59136	-0.786	-0.00041407	-0.63346	-0.00033371	-1.4195	-0.00074778	526.802536440865	38.242	0.30603	39.016	38.843	39.149	0.77451					14	5	3	0	0	0	0.61452	1	14069	14069		20.415	0	1	2999600			51545	2196	37449	37752	50335	50335					0.06762896274517516
STDKTVRLW	9	Unmodified	_STDKTVRLW_					0	0	0		ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	MULTI-MSMS	A375_MHC_IP_R1	1	553.703857421875	2	553.303655	1104.59276	-0.013197	-7.3022E-06	-0.0791	-4.3766E-05	-0.092298	-5.1069E-05	553.3036934777768	45.005	0.71125	45.005	44.523	45.234	0					22	13	2	0	0	0	0.10637	1	15644	15644		49.527	23.259	1	2871300			51546	4714	37450	37753	50336	50336					0.044645303632933064
STDKTVRLW	9	Unmodified	_STDKTVRLW_					0	0	0		ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	MULTI-SECPEP	A375_MHC_IP_R1	1	369.6051025390625	3	369.204862	1104.59276	0.82609	0.000305	-0.052939	-1.9545E-05	0.77315	0.00028545	369.2048110430562	44.747	0.50729	44.747	44.523	45.03	0					21	9	3	0	0	0	0.13208	1	15611	15611		46.022	22.233	1	6022600			51547	4714	37450	37753	50337	50337					0.044645303632933064
STDKTVRLW	9	Unmodified	_STDKTVRLW_					0	0	0		ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	MULTI-SECPEP	A375_MHC_IP_R2	2	369.9729919433594	3	369.204862	1104.59276	0.47406	0.00017502	-0.018285	-6.751E-06	0.45577	0.00016827	369.20484119741894	43.803	0.55418	44.572	44.329	44.883	0.7691					23	10	3	0	0	0	0.24324	1	16310	16310		23.801	14.257	1	5540500			51548	4714	37450	37753	50338	50338					0.044645303632933064
STDKTVRLW	9	Unmodified	_STDKTVRLW_					0	0	0		ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	MULTI-SECPEP	A375_MHC_IP_R2	2	552.7132568359375	2	553.303655	1104.59276	-0.57337	-0.00031725	0.56034	0.00031004	-0.013033	-7.2114E-06	553.3041720468557	43.836	0.35255	44.605	44.38	44.732	0.7691					12	6	2	0	0	0	0.65527	1	16301	16301		17.113	4.0704	1	1947100			51549	4714	37450	37753	50339	50339					0.044645303632933064
STDLCSDPAAH	11	Unmodified	_STDLCSDPAAH_					0	0	0			REV__ENST00000367279.8_1_1:202116485-202116680:-|nuORF	REV__ENST00000367279.8_1_1:202116485-202116680:-|nuORF	MSMS	A375_MHC_IP_R1	1	558.6682739257812	2	558.734945	1115.45534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.658	1	45.658	45.158	46.158	0								0	0	0	0.15541	1	15988	15988		17.113	4.0704	1		+		51550	23964	37451	37754	50340	50340					-0.09777166298454176
STDLDPPLAGE	11	Unmodified	_STDLDPPLAGE_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	558.2708740234375	2	557.766768	1113.51898	-0.83992	-0.00046848	-0.21296	-0.00011878	-1.0529	-0.00058726	557.7664656902768	44.954	1.3688	45.723	45.39	46.759	0.7691					62	26	4	0	0	0	0.54446	1	16994	16994		27.629	1.3607	1	17543000	+		51551	20766	37452	37755	50341	50341					-0.033234825896897746
STDLFADAGIA	11	Unmodified	_STDLFADAGIA_					0	0	0			REV__ENST00000583784.1_1_17:80007881-80008457:-|nuORF	REV__ENST00000583784.1_1_17:80007881-80008457:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	541.1513061523438	2	540.764029	1079.5135	-0.95366	-0.0005157	0.69051	0.0003734	-0.26314	-0.0001423	540.7639994857616	44.93	1.2208	45.699	45.086	46.307	0.7691					56	23	4	0	0	0	0.28699	1	16792	16792		47.749	3.9763	1	38816000	+		51552	26343	37453	37756	50342	50342					-0.023071613815318415
STDLKSFMW	9	Unmodified	_STDLKSFMW_					0	0	0			REV__ENSG00000107742|ENST00000373109|SPOCK2	REV__ENSG00000107742|ENST00000373109|SPOCK2	MULTI-MSMS	A375_MHC_IP_R1	1	557.7161254882812	2	557.765517	1113.51648	-0.38173	-0.00021292	1.3411	0.000748	0.95934	0.00053509	557.7663985786892	45.735	1.464	45.735	45.132	46.596	0					61	28	3	0	0	0	0.38603	1	16193	16193		25.399	3.8623	1	15065000	+		51553	17496	37454	37757	50343	50343					-0.03573609528348243
STDLLRAP	8	Unmodified	_STDLLRAP_					0	0	0		nc|ENSG00000110046|Q2TAZ0-3|ATG2A;ENSG00000110046|ENST00000377264|ATG2A	nc|ENSG00000110046|Q2TAZ0-3|ATG2A	nc|ENSG00000110046|Q2TAZ0-3|ATG2A	MULTI-MSMS	A375_MHC_IP_R2	2	437.27972412109375	2	436.745442	871.476331	-1.1183	-0.00048839	0.67661	0.00029551	-0.44164	-0.00019288	436.7455292698267	29.372	0.4551	30.07	29.88	30.335	0.69872					13	8	2	0	0	0	0.7338	1	10196	10196		24.674	0.65332	1	7607200			51554	2910	37455	37758	50344	50344					0.035452118633770624
STDLNLTAHW	10	Unmodified	_STDLNLTAHW_					0	0	0			REV__ENST00000564436.5_1_16:732796-733478:-|nuORF	REV__ENST00000564436.5_1_16:732796-733478:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	578.6812744140625	2	579.28292	1156.55129	-0.19696	-0.0001141	0.44186	0.00025596	0.24489	0.00014186	579.2831551206654	60.385	0.71317	60.385	60.057	60.77	0					23	13	3	0	0	0	0.70442	1	21798	21798		16.149	2.5342	1	5345200	+		51555	20228	37456	37759	50345	50345					-0.020726503960759146
STDLPRYL	8	Unmodified	_STDLPRYL_					0	0	0			REV__ENST00000459988.1_1_9:34011638-34017161:-|nuORF	REV__ENST00000459988.1_1_9:34011638-34017161:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	482.6533203125	2	482.758549	963.502546	-0.58855	-0.00028413	-0.089819	-4.3361E-05	-0.67836	-0.00032749	482.7584836968223	41.189	1.069	41.189	40.913	41.982	0					57	20	3	0	0	0	0.70843	1	14417	14417		32.117	3.6301	1	97010000	+		51556	24957	37457	37760	50346	50346					0.019334810348709652
STDLQDYTY	9	Unmodified	_STDLQDYTY_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2;ENST00000597774.5_1_19:50270412-50303272:+|nuORF;ENST00000600199.1_1_19:50270291-50299453:+|nuORF;nc|ENSG00000196961|O95782|AP2A1;ENSG00000196961|ENST00000354293|AP2A1	nc|ENSG00000183020|O94973-3|AP2A2;nc|ENSG00000196961|O95782|AP2A1	nc|ENSG00000196961|O95782|AP2A1	MULTI-MSMS	A375_MHC_IP_R1	1	553.2062377929688	2	553.237844	1104.46113	-0.50147	-0.00027743	0.31991	0.00017699	-0.18156	-0.00010045	553.2379472368242	63.387	0.81949	63.387	63.018	63.837	0					34	15	3	0	0	0	0.02559	3	22892	22855;22892;22956		78.728	38.778	1	9820200			51557	8455;9095	37458	37761	50347;50348;50349	50348					-0.08691744515135724
STDLQDYTY	9	Unmodified	_STDLQDYTY_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2;ENST00000597774.5_1_19:50270412-50303272:+|nuORF;ENST00000600199.1_1_19:50270291-50299453:+|nuORF;nc|ENSG00000196961|O95782|AP2A1;ENSG00000196961|ENST00000354293|AP2A1	nc|ENSG00000183020|O94973-3|AP2A2;nc|ENSG00000196961|O95782|AP2A1	nc|ENSG00000196961|O95782|AP2A1	MULTI-MSMS	A375_MHC_IP_R2	2	553.6372680664062	2	553.237844	1104.46113	-0.75489	-0.00041763	0.2346	0.00012979	-0.52029	-0.00028784	553.2379158991499	62.917	0.75899	63.659	63.23	63.989	0.74263					34	14	3	0	0	0	0.015701	3	23787	23737;23787;23932		88.954	41.205	1	14010000			51558	8455;9095	37458	37761	50350;50351;50352	50351					-0.08691744515135724
STDNFTRILEY	11	Unmodified	_STDNFTRILEY_					0	0	0		ENSG00000161638|ENST00000293379|ITGA5	ENSG00000161638|ENST00000293379|ITGA5	ENSG00000161638|ENST00000293379|ITGA5	MULTI-MSMS	A375_MHC_IP_R1	1	680.232666015625	2	679.832974	1357.6514	-0.81928	-0.00055697	0.18316	0.00012452	-0.63612	-0.00043245	679.8329737270896	91.115	0.6069	91.115	90.845	91.452	0					26	11	3	0	0	0	5.3149E-21	1	33448	33448		213.63	136.81	1	8376600			51559	6481	37459	37762	50353	50353					-0.013124578528959319
STDNFTRILEY	11	Unmodified	_STDNFTRILEY_					0	0	0		ENSG00000161638|ENST00000293379|ITGA5	ENSG00000161638|ENST00000293379|ITGA5	ENSG00000161638|ENST00000293379|ITGA5	MULTI-MSMS	A375_MHC_IP_R2	2	680.23291015625	2	679.832974	1357.6514	-0.53475	-0.00036354	0.22092	0.00015019	-0.31383	-0.00021335	679.8328800501267	90.408	0.6591	91.143	90.804	91.463	0.7345					30	12	4	0	0	0	1.8639E-13	1	34363	34363		180.74	119.14	1	8822600			51560	6481	37459	37762	50354	50354					-0.013124578528959319
STDPEALHY	9	Unmodified	_STDPEALHY_					0	0	0		nc|ENSG00000196526|Q8N556|AFAP1;ENSG00000196526|ENST00000420658|AFAP1;ENST00000508415.1_1_4:7790587-7795535:-|nuORF;ENST00000513842.1_1_4:7765494-7800689:-|nuORF	nc|ENSG00000196526|Q8N556|AFAP1	nc|ENSG00000196526|Q8N556|AFAP1	MULTI-MSMS	A375_MHC_IP_R1	1	516.6974487304688	2	516.735271	1031.45599	-0.8614	-0.00044512	0.32303	0.00016692	-0.53837	-0.0002782	516.7354654593696	38.093	1.4769	38.093	37.761	39.238	0					77	28	5	0	0	0	0.0098247	2	12832	12832;13158		114.94	65.011	1	405840000			51561	9053	37460	37763	50355;50356	50355					-0.058480035870843494
STDPEALHY	9	Unmodified	_STDPEALHY_					0	0	0		nc|ENSG00000196526|Q8N556|AFAP1;ENSG00000196526|ENST00000420658|AFAP1;ENST00000508415.1_1_4:7790587-7795535:-|nuORF;ENST00000513842.1_1_4:7765494-7800689:-|nuORF	nc|ENSG00000196526|Q8N556|AFAP1	nc|ENSG00000196526|Q8N556|AFAP1	MULTI-MSMS	A375_MHC_IP_R2	2	517.6700439453125	2	516.735271	1031.45599	-1.1576	-0.00059815	0.27801	0.00014366	-0.87955	-0.00045449	516.7354199607452	37.426	1.4303	38.197	37.867	39.297	0.7709					75	27	5	0	0	0	0.021919	2	13627	13627;13830		81.864	41.907	1	445740000			51562	9053	37460	37763	50357;50358	50357					-0.058480035870843494
STDPPWSQE	9	Unmodified	_STDPPWSQE_					0	0	0		ENST00000607286.5_1_5:476364-477927:+|nuORF	ENST00000607286.5_1_5:476364-477927:+|nuORF	ENST00000607286.5_1_5:476364-477927:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	524.1246337890625	2	523.724904	1045.43525	-0.82685	-0.00043304	0.48253	0.00025271	-0.34431	-0.00018033	523.7250169884722	38.116	0.76582	38.116	37.862	38.628	0					31	14	3	0	0	0	0.14572	1	12883	12883		62.573	40.826	1	23451000			51563	13918	37461	37764	50359	50359					-0.08564593966752909
STDPPWSQE	9	Unmodified	_STDPPWSQE_					0	0	0		ENST00000607286.5_1_5:476364-477927:+|nuORF	ENST00000607286.5_1_5:476364-477927:+|nuORF	ENST00000607286.5_1_5:476364-477927:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	524.1244506835938	2	523.724904	1045.43525	-0.93431	-0.00048932	0.27277	0.00014286	-0.66154	-0.00034647	523.7248943475267	37.422	0.66354	38.193	37.867	38.53	0.7709					29	12	3	0	0	0	0.14572	1	13669	13669		62.573	35.689	1	22296000			51564	13918	37461	37764	50360	50360					-0.08564593966752909
STDPPWSQEG	10	Unmodified	_STDPPWSQEG_					0	0	0		ENST00000607286.5_1_5:476364-477927:+|nuORF	ENST00000607286.5_1_5:476364-477927:+|nuORF	ENST00000607286.5_1_5:476364-477927:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	552.6354370117188	2	552.235635	1102.45672	-0.87319	-0.0004822	0.55951	0.00030898	-0.31368	-0.00017322	552.2356161605132	38.139	0.86784	38.139	37.913	38.78	0					28	16	3	0	0	0	0.6502	1	12902	12902		17.113	3.2068	1	8506900			51565	13918	37462	37765	50361	50361					-0.09041208938060663
STDPREALQY	10	Unmodified	_STDPREALQY_					0	0	0		nc|ENSG00000102900|Q8N1F7-2|NUP93;ENSG00000102900|ENST00000308159|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	MULTI-MSMS	A375_MHC_IP_R1	1	590.6856079101562	2	590.28566	1178.55677	-0.35174	-0.00020763	-0.62895	-0.00037126	-0.98069	-0.00057889	590.2857515657278	47.329	0.9692	47.329	46.699	47.668	0					57	18	4	0	0	0	0.0038974	1	16570	16570		114.19	81.881	1	23406000			51566	2399	37463	37766	50362	50362					-0.025369716042405344
STDPREALQY	10	Unmodified	_STDPREALQY_					0	0	0		nc|ENSG00000102900|Q8N1F7-2|NUP93;ENSG00000102900|ENST00000308159|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	MULTI-SECPEP	A375_MHC_IP_R2	2	590.6854248046875	2	590.28566	1178.55677	-0.40118	-0.00023681	-0.64064	-0.00037816	-1.0418	-0.00061497	590.2857000299692	46.719	1.3728	47.481	46.801	48.174	0.76128					55	26	3	0	0	0	0.37062	1	17431	17431		78.06	38.103	1	25319000			51567	2399	37463	37766	50363	50363					-0.025369716042405344
STDPRPASY	9	Unmodified	_STDPRPASY_					0	0	0		ENSG00000103126|ENST00000262320|AXIN1;nc|ENSG00000103126|O15169-2|AXIN1	ENSG00000103126|ENST00000262320|AXIN1	ENSG00000103126|ENST00000262320|AXIN1	MULTI-MSMS	A375_MHC_IP_R1	1	497.6352233886719	2	497.235439	992.456324	-0.00052619	-2.6164E-07	-0.24074	-0.0001197	-0.24126	-0.00011996	497.2352720133163	22.545	1.4696	22.545	21.505	22.974	0					81	28	4	0	0	0	0.0042961	1	6046	6046		136.39	78.67	1	44703000			51568	2421	37464	37767	50364	50364					-0.040205838672363825
STDPRPASY	9	Unmodified	_STDPRPASY_					0	0	0		ENSG00000103126|ENST00000262320|AXIN1;nc|ENSG00000103126|O15169-2|AXIN1	ENSG00000103126|ENST00000262320|AXIN1	ENSG00000103126|ENST00000262320|AXIN1	MULTI-MSMS	A375_MHC_IP_R1	1	497.6351013183594	2	497.235439	992.456324	-0.50209	-0.00024966	0.18407	9.1525E-05	-0.31802	-0.00015813	497.2354713691884	23.281	0.55911	23.281	22.974	23.533	0					21	10	3	0	0	0	0.0098859	3	6362	6282;6346;6362		117.76	69.415	1	10141000			51569	2421	37464	37767	50365;50366;50367	50367					-0.040205838672363825
STDPRPASY	9	Unmodified	_STDPRPASY_					0	0	0		ENSG00000103126|ENST00000262320|AXIN1;nc|ENSG00000103126|O15169-2|AXIN1	ENSG00000103126|ENST00000262320|AXIN1	ENSG00000103126|ENST00000262320|AXIN1	MULTI-SECPEP	A375_MHC_IP_R1	1	497.63525390625	2	497.235439	992.456324	-0.16706	-8.3066E-05	-0.36952	-0.00018374	-0.53657	-0.0002668	497.2351748682927	21.209	0.50812	21.209	20.997	21.505	0					21	9	4	0	0	0	0.011308	1	5535	5535		128.93	80.587	1	6092100			51570	2421	37464	37767	50368	50368					-0.040205838672363825
STDPRPASY	9	Unmodified	_STDPRPASY_					0	0	0		ENSG00000103126|ENST00000262320|AXIN1;nc|ENSG00000103126|O15169-2|AXIN1	ENSG00000103126|ENST00000262320|AXIN1	ENSG00000103126|ENST00000262320|AXIN1	MULTI-MSMS	A375_MHC_IP_R2	2	497.6348571777344	2	497.235439	992.456324	-0.81514	-0.00040531	-0.10636	-5.2886E-05	-0.9215	-0.0004582	497.2353414346108	20.219	0.91179	20.829	20.248	21.16	0.61029					60	17	4	0	0	0	0.014789	2	6358	6124;6358		90.135	50.178	1	31005000			51571	2421	37464	37767	50369;50370	50370					-0.040205838672363825
STDPRPASY	9	Unmodified	_STDPRPASY_					0	0	0		ENSG00000103126|ENST00000262320|AXIN1;nc|ENSG00000103126|O15169-2|AXIN1	ENSG00000103126|ENST00000262320|AXIN1	ENSG00000103126|ENST00000262320|AXIN1	MULTI-MSMS	A375_MHC_IP_R2	2	497.63507080078125	2	497.235439	992.456324	-0.83939	-0.00041738	0.0079119	3.9341E-06	-0.83148	-0.00041344	497.2353674210139	22.917	0.56151	23.547	23.164	23.726	0.63014					14	10	2	0	0	0	0.02331	2	7307	7307;7336		80.676	40.719	1	5671900			51572	2421	37464	37767	50371;50372	50371					-0.040205838672363825
STDPRPASYS	10	Unmodified	_STDPRPASYS_					0	0	0		ENSG00000103126|ENST00000262320|AXIN1;nc|ENSG00000103126|O15169-2|AXIN1	ENSG00000103126|ENST00000262320|AXIN1	ENSG00000103126|ENST00000262320|AXIN1	MULTI-MSMS	A375_MHC_IP_R1	1	541.187255859375	2	540.751453	1079.48835	-0.39769	-0.00021505	0.60633	0.00032788	0.20865	0.00011283	540.7521681593184	45.526	0.9623	45.526	45.081	46.043	0					26	18	2	0	0	0	0.6502	1	16061	16061		17.113	1.2657	1	1558900			51573	2421	37465	37768	50373	50373					-0.04821216184109289
STDPRPRDW	9	Unmodified	_STDPRPRDW_					0	0	0		nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18	nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	MULTI-SECPEP	A375_MHC_IP_R1	1	377.9535217285156	3	377.18435	1128.53122	0.36627	0.00013815	-0.2011	-7.5852E-05	0.16517	6.2298E-05	377.18423580644065	25.147	0.45506	25.147	24.953	25.408	0					14	8	2	0	0	0	0.656	1	7284	7284		19.626	11.681	1	5004600			51574	2547	37466	37769	50374	50374					-0.027904013360057434
STDPSVLGK	9	Unmodified	_STDPSVLGK_					0	0	0		ENSG00000114315|ENST00000232424|HES1;HES1|p.Q149Pfs*66|1|0.44|ENSG00000114315|chr3:194137832-194137833|-/C|frameshift_variant	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-SECPEP	A375_MHC_IP_R1	1	451.6661376953125	2	452.242732	902.470912	-0.36745	-0.00016618	-1.6544	-0.00074818	-2.0218	-0.00091436	452.24186592517293	27.114	0.25076	27.114	26.928	27.179	0					6	4	2	0	0	0	0.30925	1	8157	8157		49.554	13.427	1	2776200			51575	3209	37467	37770	50375	50375					0.0157748828091826
STDPSVLGKY	10	Unmodified	_STDPSVLGKY_					0	0	0		ENSG00000114315|ENST00000232424|HES1;HES1|p.Q149Pfs*66|1|0.44|ENSG00000114315|chr3:194137832-194137833|-/C|frameshift_variant	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-SECPEP	A375_MHC_IP_R1	1	533.2266235351562	2	533.774396	1065.53424	-0.48119	-0.00025685	-0.044865	-2.3948E-05	-0.52605	-0.00028079	533.7745107441782	45.662	1.9804	45.662	45.334	47.315	0					132	38	6	0	0	0	0.013243	1	15931	15931		184.36	134.42	1	1103900000			51576	3209	37468	37771	50376	50376					0.004094289981594557
STDPSVLGKY	10	Unmodified	_STDPSVLGKY_					0	0	0		ENSG00000114315|ENST00000232424|HES1;HES1|p.Q149Pfs*66|1|0.44|ENSG00000114315|chr3:194137832-194137833|-/C|frameshift_variant	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1736450195312	2	533.774396	1065.53424	-0.87347	-0.00046624	-0.16403	-8.7553E-05	-1.0375	-0.00055379	533.7744049161732	44.903	2.1307	45.672	45.34	47.47	0.7691					143	41	6	0	0	0	0.02839	1	16693	16693		159.1	117.26	1	1171000000			51577	3209	37468	37771	50377	50377					0.004094289981594557
STDQPTESPY	10	Unmodified	_STDQPTESPY_					0	0	0		ENST00000551227.1_1_14:29477034-29490543:+|nuORF	ENST00000551227.1_1_14:29477034-29490543:+|nuORF	ENST00000551227.1_1_14:29477034-29490543:+|nuORF	MSMS	A375_MHC_IP_R2	2	375.4222412109375	3	375.496259	1123.46695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.722	1	27.382	26.882	27.882	0.65992								0	0	0	0.15417	1	9058	9058		3.8763	0	1				51578	13382	37469	37772	50378	50378					-0.08984646003477792
STDQYFTSG	9	Unmodified	_STDQYFTSG_					0	0	0			REV__nc|ENSG00000035664|Q9UIK4-2|DAPK2	REV__nc|ENSG00000035664|Q9UIK4-2|DAPK2	MSMS	A375_MHC_IP_R2	2	503.1848449707031	2	503.211629	1004.40871	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.616	1	35.379	34.879	35.879	0.76338								0	0	0	0.1535	1	12504	12504		15.847	3.3156	1		+		51579	27096	37470	37773	50379	50379					-0.09332282858076724
STDRDWTSL	9	Unmodified	_STDRDWTSL_					0	0	0			REV__ENSG00000165323|ENST00000525166|FAT3	REV__ENSG00000165323|ENST00000525166|FAT3	MULTI-MSMS	A375_MHC_IP_R1	1	541.15185546875	2	540.751453	1079.48835	-0.39769	-0.00021505	0.60633	0.00032788	0.20865	0.00011283	540.7521681593184	45.526	0.9623	45.526	45.081	46.043	0					26	18	2	0	0	0	0.58047	1	16045	16045		15.847	0	1	1558900	+		51580	20574	37471	37774	50380	50380					-0.04821216184086552
STDRHIRLW	9	Unmodified	_STDRHIRLW_					0	0	0		ENSG00000138442|ENST00000261015|WDR12;WDR12|p.P326S|1|0.11|ENSG00000138442|chr2:202884210-202884210|G/A|missense_variant;ENST00000463824.1_1_2:203748330-203749074:-|nuORF;ENST00000477727.5_1_2:203748882-203757354:-|nuORF	ENSG00000138442|ENST00000261015|WDR12	ENSG00000138442|ENST00000261015|WDR12	MULTI-MSMS	A375_MHC_IP_R1	1	395.6157531738281	3	395.215873	1182.62579	0.3516	0.00013896	-0.0803	-3.1736E-05	0.2713	0.00010722	395.21581330706397	39.009	0.50835	39.009	38.73	39.238	0					30	9	4	0	0	0	0.0083527	1	13269	13269		108.26	22.498	1	33663000			51581	4995	37472	37775	50381	50381					0.04178157205979005
STDRHIRLW	9	Unmodified	_STDRHIRLW_					0	0	0		ENSG00000138442|ENST00000261015|WDR12;WDR12|p.P326S|1|0.11|ENSG00000138442|chr2:202884210-202884210|G/A|missense_variant;ENST00000463824.1_1_2:203748330-203749074:-|nuORF;ENST00000477727.5_1_2:203748882-203757354:-|nuORF	ENSG00000138442|ENST00000261015|WDR12	ENSG00000138442|ENST00000261015|WDR12	MULTI-MSMS	A375_MHC_IP_R2	2	395.6159362792969	3	395.215873	1182.62579	-0.36895	-0.00014581	0.16988	6.7138E-05	-0.19907	-7.8675E-05	395.21595811732703	37.991	0.6153	38.765	38.534	39.149	0.77451					33	11	4	0	0	0	0.0098859	1	13924	13924		98.73	12.966	1	37635000			51582	4995	37472	37775	50382	50382					0.04178157205979005
STDSAHESFT	10	Unmodified	_STDSAHESFT_					0	0	0		ENSG00000116544|ENST00000373347|DLGAP3	ENSG00000116544|ENST00000373347|DLGAP3	ENSG00000116544|ENST00000373347|DLGAP3	MULTI-SECPEP	A375_MHC_IP_R1	1	541.6258544921875	2	541.225268	1080.43598	-0.67671	-0.00036625	0.77401	0.00041891	0.097297	5.2659E-05	541.2260224809073	83.659	0.86568	83.659	83.175	84.041	0					55	16	5	0	0	0	0.64716	1	30530	30530		29.082	29.082	1	13465000			51583	3404	37473	37776	50383	50383					-0.1010179931768107
STDSETLRY	9	Unmodified	_STDSETLRY_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;ENST00000438197.2_1_11:85444955-85468786:-|nuORF;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-SECPEP	A375_MHC_IP_R1	1	535.6262817382812	2	536.251286	1070.48802	-0.88592	-0.00047508	0.31746	0.00017024	-0.56846	-0.00030484	536.2512691521507	30.983	1.2165	30.983	30.653	31.87	0					52	23	4	0	0	0	0.062502	1	9981	9981		83.429	55.8	1	32519000			51584	4889	37474	37777	50384	50384					-0.04440635903938528
STDSETLRY	9	Unmodified	_STDSETLRY_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;ENST00000438197.2_1_11:85444955-85468786:-|nuORF;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MSMS	A375_MHC_IP_R2	2	536.6509399414062	2	536.251286	1070.48802	-0.8954	-0.00048016	0.26798	0.00014371	-0.62742	-0.00033645	536.2512031601227	30.32	1.4187	31.039	30.658	32.077	0.71857					57	27	4	0	0	0	0.001114	1	10618	10618		152.89	60.395	1	34197000			51585	4889	37474	37777	50385	50385					-0.04440635903938528
STDSLRIL	8	Unmodified	_STDSLRIL_					0	0	0		DACH1|p.V669I|1|0.4|ENSG00000276644|chr13:71475715-71475715|C/T|missense_variant	DACH1|p.V669I|1|0.4|ENSG00000276644|chr13:71475715-71475715|C/T|missense_variant	DACH1|p.V669I|1|0.4|ENSG00000276644|chr13:71475715-71475715|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	453.1583251953125	2	452.758549	903.502546	-0.56718	-0.00025679	1.1277	0.00051057	0.56052	0.00025378	452.75886962885323	61.449	0.70495	62.194	61.919	62.624	0.74503					21	13	3	0	0	0	0.33238	1	23343	23343		56.177	0	1	1255900			51586	708	37475	37778	50386	50386					0.04693481034871638
STDSSYQMY	9	Oxidation (M)	_STDSSYQM(Oxidation (M))Y_		STDSSYQM(1)Y		STDSSYQM(130)Y	0	0	1		ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000170185|Q8NB14-2|USP38	ENSG00000170185|ENST00000307017|USP38	ENSG00000170185|ENST00000307017|USP38	MULTI-MSMS	A375_MHC_IP_R1	1	549.6078491210938	2	549.208229	1096.40191	-0.62695	-0.00034433	0.0072516	3.9826E-06	-0.6197	-0.00034034	549.208180060669	31.18	0.55565	31.18	30.959	31.514	0					20	10	2	0	0	0	0.0070829	1	9974	9974		131.27	91.31	1	5671800			51587	7479	37476	37779	50387	50387		380			-0.14243963800959136
STDSSYQMY	9	Oxidation (M)	_STDSSYQM(Oxidation (M))Y_		STDSSYQM(1)Y		STDSSYQM(120)Y	0	0	1		ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000170185|Q8NB14-2|USP38	ENSG00000170185|ENST00000307017|USP38	ENSG00000170185|ENST00000307017|USP38	MULTI-MSMS	A375_MHC_IP_R2	2	549.6073608398438	2	549.208229	1096.40191	-0.80504	-0.00044214	-0.17354	-9.5308E-05	-0.97858	-0.00053744	549.2081074274433	30.642	0.65586	31.361	31.114	31.77	0.71857					22	12	2	0	0	0	0.0098409	1	10763	10763		115.69	90.293	1	5661900			51588	7479	37476	37779	50388	50388		380			-0.14243963800959136
STDSSYQMY	9	Unmodified	_STDSSYQMY_					0	0	0		ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000170185|Q8NB14-2|USP38	ENSG00000170185|ENST00000307017|USP38	ENSG00000170185|ENST00000307017|USP38	MULTI-MSMS	A375_MHC_IP_R1	1	1081.4798583984375	1	1081.41427	1080.40699	0.4367	0.00047225	-0.67046	-0.00072504	-0.23376	-0.00025279	1081.4135573624142	48.32	0.70702	48.32	47.819	48.526	0					18	13	2	0	0	0	0.22528	1	16924	16924		36.127	29.404	1	4108900			51589	7479	37476	37780	50389	50389					-0.12999659938327568
STDSSYQMY	9	Unmodified	_STDSSYQMY_					0	0	0		ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000170185|Q8NB14-2|USP38	ENSG00000170185|ENST00000307017|USP38	ENSG00000170185|ENST00000307017|USP38	MULTI-MSMS	A375_MHC_IP_R2	2	541.6099853515625	2	541.210772	1080.40699	-0.69989	-0.00037879	-0.33742	-0.00018262	-1.0373	-0.0005614	541.2105219314477	47.671	0.50833	48.433	48.174	48.682	0.76127					15	9	2	0	0	0	0.27715	1	17900	17900		32.305	16.458	1	2469300			51590	7479	37476	37780	50390	50390					-0.12999659938327568
STDSSYQMY	9	Unmodified	_STDSSYQMY_					0	0	0		ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000170185|Q8NB14-2|USP38	ENSG00000170185|ENST00000307017|USP38	ENSG00000170185|ENST00000307017|USP38	MULTI-MATCH	A375_MHC_IP_R1	1		2	541.210772	1080.40699	-0.2895	-0.00015668	0.26305	0.00014237	-0.026452	-1.4316E-05	541.2105978388612	48.279	0.40567	48.279	48.02	48.426	0	-0.077094	0.00058601	NaN	32.305	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1981900			51591	7479	37476	37780							-0.12999659938327568
STDSTLLNV	9	Unmodified	_STDSTLLNV_					0	0	0		ENSG00000162415|ENST00000359600|ZSWIM5	ENSG00000162415|ENST00000359600|ZSWIM5	ENSG00000162415|ENST00000359600|ZSWIM5	MULTI-MSMS	A375_MHC_IP_R2	2	475.645263671875	2	475.245472	948.476391	-0.53612	-0.00025479	0.3322	0.00015788	-0.20392	-9.6913E-05	475.24544194278457	76.795	0.70658	77.536	77.199	77.906	0.74094					25	13	3	0	0	0	0.077132	1	29187	29187		54.774	16.8	1	1933700			51592	6531	37477	37781	50391	50391					9.1670727329074E-05
STDTQLYSFT	10	Unmodified	_STDTQLYSFT_					0	0	0			REV__ENSG00000242120|ENST00000567252|MDFIC2	REV__ENSG00000242120|ENST00000567252|MDFIC2	MULTI-MSMS	A375_MHC_IP_R1	1	582.166259765625	2	581.766768	1161.51898	-0.29613	-0.00017228	-0.5712	-0.0003323	-0.86733	-0.00050458	581.7663492283216	58.664	0.7638	58.664	58.278	59.041	0					19	14	2	0	0	0	0.6806	1	21111	21111		14.838	0.93222	1	2055800	+		51593	22798	37478	37782	50392	50392					-0.05531482589708503
STDTYSNGTGQ	11	Unmodified	_STDTYSNGTGQ_					0	0	0			REV__AFF4|p.V760Ffs*82|1|0.17|ENSG00000072364|chr5:132896352-132896352|C/-|frameshift_variant	REV__AFF4|p.V760Ffs*82|1|0.17|ENSG00000072364|chr5:132896352-132896352|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	566.1632690429688	2	565.733457	1129.45236	-0.5504	-0.00031138	0.29671	0.00016786	-0.25369	-0.00014352	566.2353453418227	44.955	0.56078	45.724	45.441	46.001	0.7691					12	10	2	0	0	0	0.72949	1	16831	16831		9.3831	0	1	1619000	+		51594	15341	37479	37783	50393	50393					-0.10718718151611029
STDVKGCSMY	10	Carbamidomethyl (C),Oxidation (M)	_STDVKGC(Carbamidomethyl (C))SM(Oxidation (M))Y_	STDVKGC(1)SMY	STDVKGCSM(1)Y	STDVKGC(69)SMY	STDVKGCSM(69)Y	0	1	1		nc|ENSG00000129187|P32321-2|DCTD;ENSG00000129187|ENST00000438320|DCTD	nc|ENSG00000129187|P32321-2|DCTD	nc|ENSG00000129187|P32321-2|DCTD	MULTI-MSMS	A375_MHC_IP_R1	1	582.638427734375	2	582.239006	1162.46346	0.079922	4.6534E-05	-0.41462	-0.00024141	-0.3347	-0.00019487	582.2386721116824	21.869	0.50742	21.869	21.606	22.113	0					14	9	2	0	0	0	0.073556	1	5801	5801		69.338	48.885	1	1773000			51595	4179	37480	37784	50394	50394	27	215			-0.1112735537330991
STDVSDLLHQY	11	Unmodified	_STDVSDLLHQY_					0	0	0		ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000204264|P28062-2|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-SECPEP	A375_MHC_IP_R1	1	639.7029418945312	2	639.304049	1276.59355	-0.55134	-0.00035247	-0.96153	-0.00061471	-1.5129	-0.00096718	639.3034352506136	82.823	0.70622	82.823	82.418	83.125	0					16	13	2	0	0	0	0.71083	1	30322	30322		34.222	19.816	1	1918500			51596	9420	37481	37785	50395	50395					-0.03368719778313789
STDVSDLLHQY	11	Unmodified	_STDVSDLLHQY_					0	0	0		ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000204264|P28062-2|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-MSMS	A375_MHC_IP_R2	2	639.7028198242188	2	639.304049	1276.59355	-0.79791	-0.00051011	0.8508	0.00054392	0.052887	3.3811E-05	639.3039689024409	82.138	0.40851	82.881	82.684	83.093	0.74293					14	7	3	0	0	0	0.16416	1	31228	31228		59.052	43.804	1	2001400			51597	9420	37481	37785	50396	50396					-0.03368719778313789
STDVWARGL	9	Unmodified	_STDVWARGL_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78110025-78110175:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-SECPEP	A375_MHC_IP_R1	1	503.16119384765625	2	502.761623	1003.50869	-0.19632	-9.8702E-05	-0.24736	-0.00012436	-0.44368	-0.00022306	502.7614209032408	35.52	0.71427	35.52	35.064	35.778	0					24	13	3	0	0	0	0.20567	1	11802	11802		37.974	0	1	5223800			51598	5252	37482	37786	50397	50397					0.0070799926638756006
STDYSELADA	10	Unmodified	_STDYSELADA_					0	0	0		ENSG00000126705|ENST00000673934|AHDC1	ENSG00000126705|ENST00000673934|AHDC1	ENSG00000126705|ENST00000673934|AHDC1	MULTI-SECPEP	A375_MHC_IP_R1	1	535.6262817382812	2	536.227476	1070.4404	-0.83264	-0.00044649	0.91005	0.000488	0.077412	4.151E-05	536.2277006932317	31.083	0.70809	31.083	30.806	31.514	0					25	13	3	0	0	0	0.91556	1	9981	9981		14.838	6.9281	1	3498700			51599	4055	37483	37787	50398	50398					-0.09200334894808293
STEASAPWAQ	10	Unmodified	_STEASAPWAQ_					0	0	0			REV__ENSG00000069020|ENST00000403625|MAST4	REV__ENSG00000069020|ENST00000403625|MAST4	MULTI-MSMS	A375_MHC_IP_R1	1	524.6409912109375	2	524.240721	1046.46689	-0.15125	-7.9293E-05	0.39803	0.00020867	0.24678	0.00012937	524.2407949554857	44.497	0.71341	44.497	44.165	44.878	0					21	13	2	0	0	0	0.44858	1	15492	15492		31.268	5.869	1	8222200	+		51600	16552	37484	37788	50399	50399					-0.054486012128108996
STEASAPWAQ	10	Unmodified	_STEASAPWAQ_					0	0	0			REV__ENSG00000069020|ENST00000403625|MAST4	REV__ENSG00000069020|ENST00000403625|MAST4	MULTI-MSMS	A375_MHC_IP_R2	2	524.6409912109375	2	524.240721	1046.46689	-0.33888	-0.00017765	0.57392	0.00030087	0.23504	0.00012322	524.2409555163982	43.715	0.9596	44.484	44.126	45.086	0.7691					28	18	2	0	0	0	0.59108	1	16252	16252		21.537	2.28	1	5161900	+		51601	16552	37484	37788	50400	50400					-0.054486012128108996
STEASAPWAQ	10	Unmodified	_STEASAPWAQ_					0	0	0			REV__ENSG00000069020|ENST00000403625|MAST4	REV__ENSG00000069020|ENST00000403625|MAST4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	524.240721	1046.46689	-0.15125	-7.9293E-05	0.39803	0.00020867	0.24678	0.00012937	524.2407949554857	44.497	0.71341	44.497	44.165	44.878	0	0.0064412	-0.0001146	NaN	31.268	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8222200	+		51602	16552	37484	37788							-0.054486012128108996
STEEPYGQR	9	Unmodified	_STEEPYGQR_					0	0	0			REV__chr1:6085830-6086158|175|10.03|0.1|6.63|+|2|TE_info:MIR3,MIR3_dup111,MIR,SINE,donor,+,6085655,6085830|None,KCNAB2|1	REV__chr1:6085830-6086158|175|10.03|0.1|6.63|+|2|TE_info:MIR3,MIR3_dup111,MIR,SINE,donor,+,6085655,6085830|None,KCNAB2|1	MULTI-MSMS	A375_MHC_IP_R1	1	533.6453857421875	2	533.743628	1065.4727	-0.43932	-0.00023449	1.0429	0.00055664	0.60357	0.00032215	533.7443413180246	44.348	0.71766	44.348	43.959	44.676	0					41	13	4	0	0	0	0.63811	1	15537	15537		12.532	3.7861	1	5139300	+		51603	15675	37485	37789	50401	50401					-0.0574150270113023
STEERDEPA	9	Unmodified	_STEERDEPA_					0	0	0		MAP3K4|p.P1253S|1|0.7|ENSG00000085511|chr6:161101974-161101974|C/T|missense_variant	MAP3K4|p.P1253S|1|0.7|ENSG00000085511|chr6:161101974-161101974|C/T|missense_variant	MAP3K4|p.P1253S|1|0.7|ENSG00000085511|chr6:161101974-161101974|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	517.1947631835938	2	517.225268	1032.43598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.321	1	45.09	44.59	45.59	0.7691								0	0	0	0.1535	1	16540	16540		15.847	1.2655	1				51604	14350	37486	37790	50402	50402					-0.07893799317707817
STEERHLLY	9	Unmodified	_STEERHLLY_					0	0	0		nc|ENSG00000136960|Q13822-2|ENPP2;ENSG00000136960|ENST00000075322|ENPP2	nc|ENSG00000136960|Q13822-2|ENPP2	nc|ENSG00000136960|Q13822-2|ENPP2	MULTI-MSMS	A375_MHC_IP_R2	2	574.6902465820312	2	574.290745	1146.56694	-0.23054	-0.0001324	-0.14825	-8.5138E-05	-0.37879	-0.00021754	574.2904019225799	30.48	0.55443	31.198	30.962	31.517	0.71857					33	10	4	0	0	0	0.0094639	1	10720	10720		106.94	55.31	1	3396800			51605	14623	37487	37791	50403	50403					-0.0004836387897739769
STEERHLLY	9	Unmodified	_STEERHLLY_					0	0	0		nc|ENSG00000136960|Q13822-2|ENPP2;ENSG00000136960|ENST00000075322|ENPP2	nc|ENSG00000136960|Q13822-2|ENPP2	nc|ENSG00000136960|Q13822-2|ENPP2	MULTI-SECPEP	A375_MHC_IP_R2	2	383.5961608886719	3	383.196256	1146.56694	-0.12023	-4.6071E-05	-0.18705	-7.1675E-05	-0.30727	-0.00011775	383.19609817813677	30.47	0.707	31.188	30.911	31.618	0.71857					33	13	3	0	0	0	0.63327	1	10704	10704		12.873	7.8251	1	5017700			51606	14623	37487	37791	50404	50404					-0.0004836387897739769
STEERHLLY	9	Unmodified	_STEERHLLY_					0	0	0		nc|ENSG00000136960|Q13822-2|ENPP2;ENSG00000136960|ENST00000075322|ENPP2	nc|ENSG00000136960|Q13822-2|ENPP2	nc|ENSG00000136960|Q13822-2|ENPP2	MULTI-MATCH	A375_MHC_IP_R1	1		2	574.290745	1146.56694	-0.28014	-0.00016088	0.36555	0.00020993	0.085402	4.9046E-05	574.2907770001875	31.22	0.70842	31.22	30.959	31.667	0	0.010937	0.00031322	NaN	106.94	37	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4922400			51607	14623	37487	37791							-0.0004836387897739769
STEERTFQY	9	Unmodified	_STEERTFQY_					0	0	0		nc|ENSG00000005469|Q9UKG9-3|CROT;ENSG00000005469|ENST00000331536|CROT;nc|ENSG00000005469|Q9UKG9-2|CROT	nc|ENSG00000005469|Q9UKG9-3|CROT	nc|ENSG00000005469|Q9UKG9-3|CROT	MULTI-MSMS	A375_MHC_IP_R1	1	581.2186889648438	2	580.76456	1159.51457	-0.27266	-0.00015835	-0.33163	-0.0001926	-0.60429	-0.00035095	580.764342358935	34.503	0.45468	34.503	34.253	34.708	0					25	8	4	0	0	0	0.32889	1	11421	11421		28.495	13.656	1	4894100			51608	894	37488	37792	50405	50405					-0.05880947012633442
STEERTFQY	9	Unmodified	_STEERTFQY_					0	0	0		nc|ENSG00000005469|Q9UKG9-3|CROT;ENSG00000005469|ENST00000331536|CROT;nc|ENSG00000005469|Q9UKG9-2|CROT	nc|ENSG00000005469|Q9UKG9-3|CROT	nc|ENSG00000005469|Q9UKG9-3|CROT	MULTI-MSMS	A375_MHC_IP_R2	2	581.2188110351562	2	580.76456	1159.51457	-0.84368	-0.00048998	0.35515	0.00020626	-0.48852	-0.00028372	580.7647010511475	33.815	0.55676	34.567	34.196	34.753	0.75225					24	10	4	0	0	0	0.073067	2	12112	12077;12112		55.503	28.619	1	3923600			51609	894	37488	37792	50406;50407	50407					-0.05880947012633442
STEGRYQY	8	Unmodified	_STEGRYQY_					0	0	0		ENST00000496420.5_1_7:92118724-92119217:-|nuORF	ENST00000496420.5_1_7:92118724-92119217:-|nuORF	ENST00000496420.5_1_7:92118724-92119217:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	502.6457214355469	2	502.227613	1002.44067	-0.64632	-0.0003246	0.054823	2.7534E-05	-0.5915	-0.00029707	502.227599251871	30.352	0.40571	31.071	30.86	31.266	0.71857					10	7	2	0	0	0	0.95423	1	10633	10633		7.9102	0	1	1387300			51610	12725	37489	37793	50408	50408					-0.06044870384289425
STEHSINEF	9	Unmodified	_STEHSINEF_					0	0	0			REV__nc|ENSG00000038532|Q2KHT3-2|CLEC16A	REV__nc|ENSG00000038532|Q2KHT3-2|CLEC16A	MULTI-SECPEP	A375_MHC_IP_R1	1	531.6492309570312	2	532.238178	1062.4618	-0.4998	-0.00026601	-1.0114	-0.00053829	-1.5112	-0.0008043	532.2376580542693	72.499	0.65905	72.499	72.271	72.93	0					21	12	2	0	0	0	0.71341	1	26409	26409		18.146	1.2041	1	2654200	+		51611	27097	37490	37794	50409	50409					-0.06692905075442468
STEKKGCS	8	Unmodified	_STEKKGCS_					0	0	0			REV__ENSG00000116668|ENST00000367500|SWT1	REV__ENSG00000116668|ENST00000367500|SWT1	MULTI-MSMS	A375_MHC_IP_R2	2	420.15509033203125	2	420.20001	838.385467	-0.26613	-0.00011183	0.6869	0.00028863	0.42077	0.00017681	420.20059091760373	35.667	0.66268	36.431	36.283	36.946	0.76338					17	12	2	0	0	0	0.75805	1	12998	12998		18.135	0	1	1399200	+		51612	17962	37491	37795	50410	50410					-0.040190001764017325
STEKKGCS	8	Unmodified	_STEKKGCS_					0	0	0			REV__ENSG00000116668|ENST00000367500|SWT1	REV__ENSG00000116668|ENST00000367500|SWT1	MULTI-SECPEP	A375_MHC_IP_R2	2	420.9871520996094	2	420.20001	838.385467	-0.26613	-0.00011183	0.6869	0.00028863	0.42077	0.00017681	420.20059091760373	35.667	0.66268	36.431	36.283	36.946	0.76338					17	12	2	0	0	0	0.97144	1	12950	12950		14.582	5.2343	1	1399200	+		51613	17962	37491	37795	50411	50411					-0.040190001764017325
STEKWREE	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))STEKWREE_					1	0	0			REV__ENST00000555784.5_1_10:84711250-84718713:+|nuORF	REV__ENST00000555784.5_1_10:84711250-84718713:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	554.1591186523438	2	553.759278	1105.504	-0.26947	-0.00014922	-0.12879	-7.1321E-05	-0.39827	-0.00022054	553.7592435039452	48.113	0.45507	48.113	47.819	48.274	0					15	8	2	0	0	0	0.62444	1	16951	16951		43.858	9.7559	1	4637400	+		51614	26100	37492	37796	50412	50412					-0.04452929667036187
STEKWREE	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))STEKWREE_					1	0	0			REV__ENST00000555784.5_1_10:84711250-84718713:+|nuORF	REV__ENST00000555784.5_1_10:84711250-84718713:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	553.759278	1105.504	-0.26947	-0.00014922	-0.12879	-7.1321E-05	-0.39827	-0.00022054	553.7592435039452	48.113	0.45507	48.113	47.819	48.274	0	0.010221	-0.00017859	NaN	43.858	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4637400	+		51615	26100	37492	37796							-0.04452929667036187
STEKWREE	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))STEKWREE_					1	0	0			REV__ENST00000555784.5_1_10:84711250-84718713:+|nuORF	REV__ENST00000555784.5_1_10:84711250-84718713:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	553.759278	1105.504	-0.60412	-0.00033454	0.22584	0.00012506	-0.37828	-0.00020947	553.7593252463739	47.332	0.50934	48.093	47.817	48.326	0.76128	-0.010221	0.00021417	NaN	43.858	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4585200	+		51616	26100	37492	37796							-0.04452929667036187
STELNHLGY	9	Unmodified	_STELNHLGY_					0	0	0		ENST00000568636.5_1_16:720997-722003:+|nuORF;ENST00000569358.5_1_16:720997-722561:+|nuORF;ENST00000602564.5_1_16:720997-722561:+|nuORF;ENSG00000140983|ENST00000315082|RHOT2	ENST00000568636.5_1_16:720997-722003:+|nuORF	ENST00000568636.5_1_16:720997-722003:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	517.65087890625	2	517.251089	1032.48762	-0.18688	-9.6662E-05	-0.21508	-0.00011125	-0.40196	-0.00020791	517.2509901150141	44.497	1.4727	44.497	44.061	45.534	0					88	28	5	0	0	0	0.0096	3	15448	15448;15670;15746		174.73	110.49	1	244810000			51617	5200	37493	37797	50413;50414;50415	50413					-0.0273201083314234
STELNHLGY	9	Unmodified	_STELNHLGY_					0	0	0		ENST00000568636.5_1_16:720997-722003:+|nuORF;ENST00000569358.5_1_16:720997-722561:+|nuORF;ENST00000602564.5_1_16:720997-722561:+|nuORF;ENSG00000140983|ENST00000315082|RHOT2	ENST00000568636.5_1_16:720997-722003:+|nuORF	ENST00000568636.5_1_16:720997-722003:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	517.6508178710938	2	517.251089	1032.48762	-0.56112	-0.00029024	-0.16947	-8.7659E-05	-0.73059	-0.0003779	517.2509733871096	43.682	1.9255	44.451	44.076	46.001	0.7691					102	37	5	0	0	0	0.0028027	4	16428	16206;16428;16522;16663		174.73	110.49	1	174870000			51618	5200	37493	37797	50416;50417;50418;50419	50417					-0.0273201083314234
STENEKYP	8	Unmodified	_STENEKYP_					0	0	0		ENST00000434411.5_1_17:75084932-75085273:+|nuORF;ENST00000561721.6_1_17:75084932-75085273:+|nuORF	ENST00000434411.5_1_17:75084932-75085273:+|nuORF	ENST00000434411.5_1_17:75084932-75085273:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	484.1378173828125	2	484.221997	966.429441	-0.28401	-0.00013752	-0.55822	-0.0002703	-0.84223	-0.00040783	484.22205069735236	52.312	0.35322	52.312	52.085	52.438	0					12	6	2	0	0	0	0.7758	1	18528	18528		10.183	0	1	1296900			51619	11900	37494	37798	50420	50420					-0.05511692478432906
STENYLILP	9	Unmodified	_STENYLILP_					0	0	0		ENST00000525625.1_1_11:125884983-125893371:-|nuORF;ENSG00000064309|ENST00000531738|CDON;nc|ENSG00000064309|Q4KMG0|CDON	ENST00000525625.1_1_11:125884983-125893371:-|nuORF	ENST00000525625.1_1_11:125884983-125893371:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6409912109375	2	525.279315	1048.54408	-0.20987	-0.00011024	-0.040408	-2.1226E-05	-0.25028	-0.00013146	525.2791790072614	44.421	0.46143	44.421	44.165	44.626	0					14	8	2	0	0	0	0.69504	1	15492	15492		12.532	0	1	2721200			51620	1348	37495	37799	50421	50421					0.02174617003538515
STEQFQEYY	9	Unmodified	_STEQFQEYY_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MULTI-SECPEP	A375_MHC_IP_R1	1	598.15087890625	2	597.751118	1193.48768	-0.55363	-0.00033093	0.55875	0.00033399	0.0051178	3.0591E-06	597.751362149508	65.95	0.60789	65.95	65.616	66.224	0					30	11	4	0	0	0	0.39388	1	23855	23855		25.399	6.1423	1	5692700			51621	1812	37496	37800	50422	50422					-0.10132055623785163
STEQFQEYY	9	Unmodified	_STEQFQEYY_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MULTI-MSMS	A375_MHC_IP_R2	2	598.1502075195312	2	597.751118	1193.48768	-0.67422	-0.00040302	0.24475	0.0001463	-0.42948	-0.00025672	597.751275676409	65.423	0.70885	66.161	65.766	66.475	0.73811					29	13	3	0	0	0	0.070818	1	24754	24754		56.177	10.477	1	4238800			51622	1812	37496	37800	50423	50423					-0.10132055623785163
STEQIPILY	9	Unmodified	_STEQIPILY_					0	0	0		ENSG00000131459|ENST00000253778|GFPT2	ENSG00000131459|ENST00000253778|GFPT2	ENSG00000131459|ENST00000253778|GFPT2	MULTI-SECPEP	A375_MHC_IP_R1	1	532.6871337890625	2	532.28714	1062.55973	-0.42784	-0.00022773	0.64702	0.0003444	0.21918	0.00011667	532.2871435723216	106.81	1.1755	106.81	106.32	107.49	0					72	22	6	0	0	0	0.034037	1	39146	39146		60.074	0	1	8398400			51623	4330	37497	37801	50424	50424					0.03094903520582193
STEQRMCLV	9	Unmodified	_STEQRMCLV_					0	0	0			REV__ENST00000260604.8_1_2:55870335-55906871:-|nuORF	REV__ENST00000260604.8_1_2:55870335-55906871:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	533.7057495117188	2	533.754627	1065.4947	-0.67951	-0.00036269	-0.012647	-6.7505E-06	-0.69215	-0.00036944	533.7548479983305	46.166	0.80943	46.931	46.453	47.262	0.76519					19	15	2	0	0	0	0.6656	1	17389	17389		10.074	0.72649	1	1644600	+		51624	23177	37498	37802	50425	50425					-0.03542737548605146
STFAGSGKFAA	11	Unmodified	_STFAGSGKFAA_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2;nc|ENSG00000257335|O43451-1|MGAM;ENSG00000257335|ENST00000475668|MGAM	ENSG00000257743|ENST00000477922|MGAM2;nc|ENSG00000257335|O43451-1|MGAM	ENSG00000257743|ENST00000477922|MGAM2	MULTI-MSMS	A375_MHC_IP_R1	1	522.6609497070312	2	522.261456	1042.50836	-0.6332	-0.0003307	-0.40899	-0.0002136	-1.0422	-0.00054429	522.2615305870921	65.714	1.0173	65.714	65.105	66.122	0					39	19	3	0	0	0	0.65093	1	23781	23781		19.362	0.10495	1	3497600			51625	9912;9908	37499	37803	50426	50426					-0.011194204534831442
STFDSPAHW	9	Unmodified	_STFDSPAHW_					0	0	0		ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	MULTI-MSMS	A375_MHC_IP_R1	1	524.62890625	2	524.230156	1046.44576	-0.55864	-0.00029286	-2.191	-0.0011486	-2.7497	-0.0014415	524.2287254848925	58.539	0.50842	58.539	58.278	58.786	0					16	9	2	0	0	0	0.2264	1	21054	21054		36.044	6.9626	1	2113200			51626	5630	37500	37804	50427	50427					-0.07560566521692635
STFEKEKI	8	Unmodified	_STFEKEKI_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-SECPEP	A375_MHC_IP_R2	2	491.1737976074219	2	491.266207	980.517862	-0.85541	-0.00042024	0.3213	0.00015784	-0.53411	-0.00026239	491.26627110423266	57.512	0.40799	58.261	58.069	58.477	0.74894					15	7	3	0	0	0	0.73227	1	21765	21765		37.974	0	1	1515100			51627	2747	37501	37805	50428	50428					0.026823478320466165
STFFFLIKSVK	11	Unmodified	_STFFFLIKSVK_					0	0	0			REV__ENST00000466078.1_1_13:33222909-33223050:+|nuORF	REV__ENST00000466078.1_1_13:33222909-33223050:+|nuORF	MSMS	A375_MHC_IP_R2	2	658.8850708007812	2	658.884281	1315.75401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.934	1	18.53	18.03	19.03	0.59616								0	0	0	0.16355	1	5305	5305		0.26902	0	1		+		51628	25032	37502	37806	50429	50429					0.1087627967649496
STFFKIFY	8	Unmodified	_STFFKIFY_					0	0	0		tr|U7T5C5|U7T5C5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00520PE=4SV=1	tr|U7T5C5|U7T5C5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00520PE=4SV=1	tr|U7T5C5|U7T5C5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00520PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	527.1372680664062	2	526.776211	1051.53787	-0.33342	-0.00017564	-2.7234	-0.0014346	-3.0568	-0.0016102	527.2757419542427	46.473	0.40744	47.238	47.008	47.416	0.76519					5	3	2	0	0	0	0.93416	1	17373	17373		14.582	2.0501	1	881240			51629	30019	37503	37807	50430	50430					0.01416143562664729
STFGCDEC	8	Unmodified	_STFGCDEC_					0	0	0			REV__ENSG00000105261|ENST00000633214|OVOL3	REV__ENSG00000105261|ENST00000633214|OVOL3	MSMS	A375_MHC_IP_R1	1	431.2885437011719	2	431.141304	860.268054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.201	1	41.201	40.701	41.701	0								0	0	0	0.16876	1	14211	14211		2.5775	0	1		+		51630	17366	37504	37808	50431	50431					-0.1676690110753043
STFGDVRKL	9	Unmodified	_STFGDVRKL_					0	0	0		ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	MULTI-SECPEP	A375_MHC_IP_R1	1	512.1847534179688	2	511.785099	1021.55564	-0.25837	-0.00013223	-0.25383	-0.00012991	-0.5122	-0.00026214	511.7849296851806	37.479	0.30693	37.479	37.249	37.556	0					9	5	2	0	0	0	0.69381	1	12655	12655		20.415	0	1	2600700			51631	8427	37505	37809	50432	50432					0.04572858817527958
STFGDVRKL	9	Unmodified	_STFGDVRKL_					0	0	0		ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	MULTI-MATCH	A375_MHC_IP_R2	2		2	511.785099	1021.55564	-1.0861	-0.00055587	0.36306	0.00018581	-0.72308	-0.00037006	511.7852995703685	36.537	0.30417	37.308	37.157	37.461	0.7709	-0.085729	0.00044145	NaN	20.415	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1570300			51632	8427	37505	37809							0.04572858817527958
STFGYVHGV	9	Unmodified	_STFGYVHGV_					0	0	0		ENSG00000114573|ENST00000273398|ATP6V1A;ENST00000462855.1_1_3:113497600-113497687:+|nuORF	ENSG00000114573|ENST00000273398|ATP6V1A	ENSG00000114573|ENST00000273398|ATP6V1A	MULTI-SECPEP	A375_MHC_IP_R1	1	483.15838623046875	2	483.737617	965.460681	-0.23563	-0.00011398	0.44665	0.00021606	0.21101	0.00010208	483.7378609626115	52.125	0.40761	52.125	51.879	52.287	0					12	7	2	0	0	0	0.56939	1	18488	18488		26.341	10.494	1	2219600			51633	3230	37506	37810	50433	50433					-0.023430746536632796
STFGYVHGV	9	Unmodified	_STFGYVHGV_					0	0	0		ENSG00000114573|ENST00000273398|ATP6V1A;ENST00000462855.1_1_3:113497600-113497687:+|nuORF	ENSG00000114573|ENST00000273398|ATP6V1A	ENSG00000114573|ENST00000273398|ATP6V1A	MULTI-MSMS	A375_MHC_IP_R2	2	484.1737060546875	2	483.737617	965.460681	-0.76538	-0.00037024	0.15942	7.7119E-05	-0.60596	-0.00029312	483.7376426162152	51.356	0.40606	52.108	51.864	52.27	0.75225					13	7	2	0	0	0	0.36685	2	19296	19296;19348		26.341	8.2063	1	1958700			51634	3230	37506	37810	50434;50435	50434					-0.023430746536632796
STFPGFVSW	9	Unmodified	_STFPGFVSW_					0	0	0		ENSG00000132906|ENST00000333868|CASP9;nc|ENSG00000132906|P55211-4|CASP9;nc|ENSG00000132906|P55211-2|CASP9	ENSG00000132906|ENST00000333868|CASP9	ENSG00000132906|ENST00000333868|CASP9	MULTI-MSMS	A375_MHC_IP_R2	2	1028.2169189453125	1	1027.48836	1026.48108	-0.037897	-3.8939E-05	-0.22341	-0.00022955	-0.26131	-0.00026849	1027.4881409772208	128.29	0.35837	128.53	128.35	128.71	0.23946					10	6	2	0	0	0	0.0090323	1	50370	50370		99.799	43.622	1	14650000			51635	4461	37507	37811	50436	50436					-0.031099039938681017
STFSWKQCT	9	Unmodified	_STFSWKQCT_					0	0	0			REV__PLG|p.S129F|2|0.51|ENSG00000122194|chr6:160711170-160711170|C/T|missense_variant	REV__PLG|p.S129F|2|0.51|ENSG00000122194|chr6:160711170-160711170|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	544.1543579101562	2	544.247492	1086.48043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.19	1	50.19	49.69	50.69	0								0	0	0	0.15411	1	17774	17774		14.838	2.5976	1		+		51636	27806	37508	37812	50437	50437					-0.059350667052285644
STFVHVAAA	9	Unmodified	_STFVHVAAA_					0	0	0			REV__nc|ENSG00000170615|P58743-4|SLC26A5	REV__nc|ENSG00000170615|P58743-4|SLC26A5	MULTI-MSMS	A375_MHC_IP_R1	1	451.6712646484375	2	451.74016	901.465767	0.23443	0.0001059	-0.29536	-0.00013343	-0.060939	-2.7529E-05	451.7399593001823	48.569	0.35404	48.569	48.375	48.729	0					9	6	2	0	0	0	0.4867	1	17159	17159		20.454	0	1	1258400	+		51637	21008	37509	37813	50438	50438					0.011092292089415423
STGEEKRVF	9	Unmodified	_STGEEKRVF_					0	0	0		ENSG00000170322|ENST00000682444|NFRKB;nc|ENSG00000170322|Q6P4R8-2|NFRKB;NFRKB|p.Q522Rfs*29|1|0.25|ENSG00000170322|chr11:129877334-129877334|A/-|frameshift_variant;nc|ENSG00000170322|Q6P4R8-3|NFRKB	ENSG00000170322|ENST00000682444|NFRKB	ENSG00000170322|ENST00000682444|NFRKB	MSMS	A375_MHC_IP_R2	2	526.7051391601562	2	526.772188	1051.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.83	1	66.568	66.068	67.068	0.73811								0	0	0	0.15411	1	24960	24960		14.838	1.7958	1				51638	7493	37510	37814	50439	50439					0.006119645752505676
STGFITHVV	9	Unmodified	_STGFITHVV_					0	0	0		nc|ENSG00000119684|Q9UHC1-2|MLH3;ENSG00000119684|ENST00000355774|MLH3	nc|ENSG00000119684|Q9UHC1-2|MLH3	nc|ENSG00000119684|Q9UHC1-2|MLH3	MSMS	A375_MHC_IP_R2	2	480.6098937988281	2	480.761092	959.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.952	1	78.695	78.195	79.195	0.74293								0	0	0	0.15486	1	29603	29603		12.532	0.89125	1				51639	3610	37511	37815	50440	50440					0.026257848974637454
STGLFQNRYK	10	Unmodified	_STGLFQNRYK_					0	0	0			REV__ENSG00000215529|ENST00000400522|EFCAB8	REV__ENSG00000215529|ENST00000400522|EFCAB8	MULTI-SECPEP	A375_MHC_IP_R2	2	405.62786865234375	3	405.21565	1212.62512	-4.4662E-05	-1.8098E-08	-0.36148	-0.00014648	-0.36152	-0.00014649	405.2154508655052	31.82	0.20351	32.557	32.401	32.605	0.73691					8	3	3	0	0	0	0.91932	1	11260	11260		7.9454	0	1	1483200	+		51640	22677	37512	37816	50441	50441					0.027313177662790622
STGTVFSGSF	10	Unmodified	_STGTVFSGSF_					0	0	0		ENSG00000215262|ENST00000399881|KCNU1	ENSG00000215262|ENST00000399881|KCNU1	ENSG00000215262|ENST00000399881|KCNU1	MSMS	A375_MHC_IP_R1	1	495.1659851074219	2	495.232364	988.450176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.328	1	36.328	35.828	36.828	0								0	0	0	0.14673	1	12152	12152		24.021	4.7636	1				51641	9642	37513	37817	50442	50442					-0.04451102098744286
STHKFKESK	9	Unmodified	_STHKFKESK_					0	0	0			REV__nc|ENSG00000112137|Q9C0D0-2|PHACTR1	REV__nc|ENSG00000112137|Q9C0D0-2|PHACTR1	MULTI-SECPEP	A375_MHC_IP_R2	2	546.6713256835938	2	546.29583	1090.57711	-1.1863	-0.00064806	0.19486	0.00010645	-0.99142	-0.00054161	546.2959624474773	26.423	0.25364	27.083	26.907	27.161	0.65992					7	4	2	0	0	0	0.74412	1	8872	8872		10.074	5.7447	1	2112400	+		51642	17708	37514	37818	50443	50443					0.03544243846226891
STHRTIFLN	9	Unmodified	_STHRTIFLN_					0	0	0		nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4;ENSG00000242419|ENST00000306593|PCDHGC4	nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	MULTI-SECPEP	A375_MHC_IP_R1	1	364.2491149902344	3	363.533091	1087.57744	0.078555	2.8557E-05	-0.2786	-0.00010128	-0.20004	-7.2722E-05	363.5330156189842	31.17	0.65714	31.17	30.857	31.514	0					21	12	2	0	0	0	0.77396	1	10083	10083		3.8763	3.012	1	2383500			51643	9797	37515	37819	50444	50444					0.03715663566094918
STHSEAPP	8	Unmodified	_STHSEAPP_					0	0	0		nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-2|GON4L;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-7|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1	nc|ENSG00000116580|Q3T8J9-3|GON4L;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-8|YY1AP1	nc|ENSG00000116580|Q3T8J9-3|GON4L	MULTI-MSMS	A375_MHC_IP_R1	1	413.5899963378906	2	413.1905	824.366446	-0.075091	-3.1027E-05	-1.475	-0.00060945	-1.5501	-0.00064047	413.1900067150344	137.77	0.81693	137.77	137.44	138.25	0					21	15	2	0	0	0	0.77797	1	53039	53039		2.3027	0.65011	1	1359000			51644	3407;11999;14719	37516	37820	50445	50445					-0.05276213475815439
STIDFRAGF	9	Unmodified	_STIDFRAGF_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant;HMCN1|p.P2051Lfs*3|1|0.45|ENSG00000143341|chr1:186039851-186039861|CTGTTTCTAGT/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	A375_MHC_IP_R1	1	507.65557861328125	2	507.256174	1012.49779	-0.42742	-0.00021681	-0.015973	-8.1024E-06	-0.4434	-0.00022492	507.2560593912591	76.042	0.55576	76.042	75.764	76.319	0					18	10	2	0	0	0	0.4875	1	27725	27725		20.415	10.231	1	2520500			51645	5371	37517	37821	50446	50446					-0.007954031079066226
STIFQCCF	8	Unmodified	_STIFQCCF_					0	0	0			REV__nc|ENSG00000146576|Q96N11-2|INTS15	REV__nc|ENSG00000146576|Q96N11-2|INTS15	MSMS	A375_MHC_IP_R2	2	474.6553039550781	2	474.701331	947.38811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.806	1	74.542	74.042	75.042	0.7361								0	0	0	0.16876	1	28015	28015		14.582	0	1		+		51646	19543	37518	37822	50447	50447					-0.08768868043102884
STIIEIVF	8	Unmodified	_STIIEIVF_					0	0	0		USP44|p.S229F|1|0.15|ENSG00000136014|chr12:95533571-95533571|G/A|missense_variant	USP44|p.S229F|1|0.15|ENSG00000136014|chr12:95533571-95533571|G/A|missense_variant	USP44|p.S229F|1|0.15|ENSG00000136014|chr12:95533571-95533571|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	461.64239501953125	2	461.268219	920.521884	0.23165	0.00010685	1.6939	0.00078135	1.9256	0.0008882	461.2689559426374	45.107	0.35561	45.107	44.928	45.284	0					9	6	2	0	0	0	0.972	1	15734	15734		4.756	0	1	661310			51647	30130	37519	37823	50448	50448					0.058444373257771076
STIIEYTSV	9	Unmodified	_STIIEYTSV_					0	0	0			REV__TMPRSS7|p.G767E|1|0.86|ENSG00000176040|chr3:112078817-112078817|G/A|missense_variant	REV__TMPRSS7|p.G767E|1|0.86|ENSG00000176040|chr3:112078817-112078817|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	506.6766357421875	2	506.763497	1011.51244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.922	1	61.922	61.422	62.422	0								0	0	0	0.1499	1	22345	22345		21.747	0.87544	1		+		51648	28134	37520	37824	50449	50449					0.007146242495878141
STIKFSSNK	9	Unmodified	_STIKFSSNK_					0	0	0		nc|ENSG00000160584|Q9Y2K2-6|SIK3	nc|ENSG00000160584|Q9Y2K2-6|SIK3	nc|ENSG00000160584|Q9Y2K2-6|SIK3	MULTI-SECPEP	A375_MHC_IP_R1	1	505.68145751953125	2	506.277106	1010.53966	-0.39171	-0.00019831	-0.18076	-9.1515E-05	-0.57247	-0.00028983	506.27697107684395	53.428	0.81248	53.428	52.997	53.809	0					39	15	3	0	0	0	0.67483	1	19184	19184		20.454	0	1	23774000			51649	14712	37521	37825	50450	50450					0.03481152580627622
STIKGIIKAKK	11	Unmodified	_STIKGIIKAKK_					0	0	0			REV__tr|U7T2Q1|U7T2Q1_FUSNUGeneralsecretionpathwayproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00785PE=3SV=1	REV__tr|U7T2Q1|U7T2Q1_FUSNUGeneralsecretionpathwayproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00785PE=3SV=1	MSMS	A375_MHC_IP_R1	1	396.1648864746094	3	396.267574	1185.78089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.15	1	52.15	51.65	52.65	0								0	0	0	0.16353	1	18535	18535		0.36667	0.13083	1		+		51650	28755	37522	37826	50451	50451					0.19543388287684138
STILLALTGIK	11	Unmodified	_STILLALTGIK_					0	0	0		ENST00000251241.8_1_17:57684754-57684838:+|nuORF	ENST00000251241.8_1_17:57684754-57684838:+|nuORF	ENST00000251241.8_1_17:57684754-57684838:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	377.285400390625	3	377.244547	1128.71181	0.37046	0.00013975	0.67582	0.00025495	1.0463	0.0003947	377.2447312838809	61.893	0.46049	61.893	61.636	62.097	0					13	8	2	0	0	0	0.72649	1	22378	22378		6.6235	0	1	1610600			51651	10202	37523	37827	50452	50452					0.1526030426809939
STIMRQPG	8	Unmodified	_STIMRQPG_					0	0	0			REV__nc|ENSG00000164458|O15178-2|TBXT	REV__nc|ENSG00000164458|O15178-2|TBXT	MULTI-SECPEP	A375_MHC_IP_R1	1	445.9610595703125	2	445.231645	888.448736	-0.25228	-0.00011232	0.97083	0.00043224	0.71855	0.00031992	445.23197712283263	23.355	0.30663	23.355	23.227	23.533	0					6	5	2	0	0	0	0.97021	1	6467	6467		3.5965	0	1	894920	+		51652	20495	37524	37828	50453	50453					4.985331509033131E-05
STIQNTRML	9	Unmodified	_STIQNTRML_					0	0	0		nc|ENSG00000131355|Q9BY15-2|ADGRE3;ENSG00000131355|ENST00000253673|ADGRE3	nc|ENSG00000131355|Q9BY15-2|ADGRE3	nc|ENSG00000131355|Q9BY15-2|ADGRE3	MULTI-SECPEP	A375_MHC_IP_R2	2	354.4700927734375	3	355.190336	1062.54918	-0.71704	-0.00025468	1.0073	0.00035778	0.29025	0.00010309	355.19039340359603	33.595	0.20283	34.347	34.247	34.45	0.75225					5	3	2	0	0	0	0.78798	1	12083	12083		2.2828	0	1	546860			51653	4321	37525	37829	50454	50454					0.02040597594486826
STIRLPHVKY	10	Unmodified	_STIRLPHVKY_					0	0	0		ENSG00000011009|ENST00000374514|LYPLA2;ENST00000495365.5_1_1:24119163-24120565:+|nuORF	ENSG00000011009|ENST00000374514|LYPLA2	ENSG00000011009|ENST00000374514|LYPLA2	MULTI-MSMS	A375_MHC_IP_R1	1	405.6399230957031	3	405.239907	1212.69789	-0.46238	-0.00018737	0.42322	0.00017151	-0.039154	-1.5867E-05	405.24002463198184	40.923	0.65656	40.923	40.609	41.266	0					25	12	3	0	0	0	0.44533	1	14096	14096		31.462	12.741	1	2542600			51654	989	37526	37830	50455	50455					0.10005071559726275
STIRLPHVKY	10	Unmodified	_STIRLPHVKY_					0	0	0		ENSG00000011009|ENST00000374514|LYPLA2;ENST00000495365.5_1_1:24119163-24120565:+|nuORF	ENSG00000011009|ENST00000374514|LYPLA2	ENSG00000011009|ENST00000374514|LYPLA2	MULTI-MATCH	A375_MHC_IP_R2	2		3	405.239907	1212.69789	-0.03525	-1.4285E-05	-0.063931	-2.5907E-05	-0.099181	-4.0192E-05	405.2397516407018	40.12	0.60909	40.894	40.422	41.031	0.77451	-0.014342	-0.00045234	NaN	31.462	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1741700			51655	989	37526	37830							0.10005071559726275
STKCDKIQFIC	11	Unmodified	_STKCDKIQFIC_					0	0	0		ENST00000281146.9_1_4:130027796-130030758:+|nuORF	ENST00000281146.9_1_4:130027796-130030758:+|nuORF	ENST00000281146.9_1_4:130027796-130030758:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	429.61383056640625	3	429.214153	1284.62063	-0.20843	-8.9461E-05	-0.80082	-0.00034372	-1.0092	-0.00043318	429.21382124431534	34.361	0.45401	34.361	34.154	34.608	0					13	8	2	0	0	0	0.7353	1	11338	11338		3.8459	0.25323	1	3476000			51656	10425	37527	37831	50456	50456					-0.010296507631437635
STKDRKLLLT	10	Unmodified	_STKDRKLLLT_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;nc|ENSG00000123143|Q16512-2|PKN1	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-MSMS	A375_MHC_IP_R1	1	588.2610473632812	2	587.861338	1173.70812	-0.64114	-0.0003769	0.19546	0.00011491	-0.44568	-0.000262	587.8616147162074	145.15	0.50362	145.15	144.92	145.42	0					31	23	2	0	0	0	0.72416	1	55646	55646		1.4819	0	1	222520			51657	3829	37528	37832	50457	50457					0.12821634494275713
STKLLDKTL	9	Unmodified	_STKLLDKTL_					0	0	0		tr|U7SV10|U7SV10_FUSNUMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferaseTrmFOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmFOPE=3SV=1	tr|U7SV10|U7SV10_FUSNUMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferaseTrmFOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmFOPE=3SV=1	tr|U7SV10|U7SV10_FUSNUMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferaseTrmFOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmFOPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	509.6529846191406	2	509.810782	1017.60701	-0.45584	-0.00023239	-0.44183	-0.00022525	-0.89767	-0.00045764	509.810402488964	33.368	0.30581	33.368	33.19	33.496	0					7	5	2	0	0	0	0.69507	1	10889	10889		19.257	3.4098	1	1905400			51658	29782	37529	37833	50458	50458					0.09891182791557185
STKPPITF	8	Unmodified	_STKPPITF_					0	0	0		nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;MON2|p.L1675Ffs*21|1|0.57|ENSG00000061987|chr12:62592617-62592618|-/T|frameshift_variant;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF	nc|ENSG00000061987|Q7Z3U7-2|MON2	nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-SECPEP	A375_MHC_IP_R1	1	446.1524353027344	2	445.752736	889.490919	-0.0072123	-3.2149E-06	-0.040183	-1.7912E-05	-0.047395	-2.1127E-05	445.7526784927645	53.568	0.50937	53.568	53.352	53.861	0					16	9	2	0	0	0	0.55873	1	19130	19130		58.679	24.576	1	4672500			51659	1324	37530	37834	50459	50459					0.041752840115123036
STKPPITF	8	Unmodified	_STKPPITF_					0	0	0		nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;MON2|p.L1675Ffs*21|1|0.57|ENSG00000061987|chr12:62592617-62592618|-/T|frameshift_variant;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF	nc|ENSG00000061987|Q7Z3U7-2|MON2	nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-SECPEP	A375_MHC_IP_R2	2	446.1524963378906	2	445.752736	889.490919	-0.85711	-0.00038206	0.1142	5.0906E-05	-0.74291	-0.00033115	445.75270710265005	52.641	0.55534	53.393	53.134	53.69	0.75225					17	10	2	0	0	0	0.4193	1	19880	19880		58.679	30.192	1	2873300			51660	1324	37530	37834	50460	50460					0.041752840115123036
STKPSLSLPR	10	Unmodified	_STKPSLSLPR_					0	0	0			REV__ENST00000506605.6_1_5:112440034-112458515:-|nuORF	REV__ENST00000506605.6_1_5:112440034-112458515:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	362.2731628417969	3	362.548629	1084.62406	-0.31977	-0.00011593	-0.7262	-0.00026328	-1.046	-0.00037922	362.5484443986137	34.717	0.35427	35.481	35.273	35.627	0.76338					12	6	3	0	0	0	0.92199	1	12561	12561		4.7159	0	1	1778600	+		51661	25558	37531	37835	50461	50461					0.08513103397376653
STKRKDIFV	9	Unmodified	_STKRKDIFV_					0	0	0		tr|U7SQR4|U7SQR4_FUSNUGlycosyltransferaseRgtA/B/C/D-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01666PE=4SV=1	tr|U7SQR4|U7SQR4_FUSNUGlycosyltransferaseRgtA/B/C/D-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01666PE=4SV=1	tr|U7SQR4|U7SQR4_FUSNUGlycosyltransferaseRgtA/B/C/D-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01666PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	547.3978271484375	2	547.321848	1092.62914	-0.89149	-0.00048793	0.01376	7.5314E-06	-0.87773	-0.0004804	547.3217270542494	142.75	0.95767	142.75	142.24	143.19	0					42	18	3	0	0	0	0.80101	1	54865	54865		2.0598	0	1	5507700			51662	29592	37532	37836	50462	50462					0.08653407259998858
STKSAFRSPL	10	Unmodified	_STKSAFRSPL_					0	0	0		ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	MULTI-SECPEP	A375_MHC_IP_R2	2	364.92047119140625	3	365.204862	1092.59276	-0.37738	-0.00013782	0.37239	0.000136	-0.0049853	-1.8207E-06	365.2049410808639	26.239	0.30441	26.899	26.754	27.058	0.65992					7	5	2	0	0	0	0.88918	1	8916	8916		11.518	4.4808	1	1246400			51663	8140	37533	37837	50463	50463					0.050165303632638825
STKSLQELF	9	Unmodified	_STKSLQELF_					0	0	0		ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	A375_MHC_IP_R2	2	527.184326171875	2	526.784764	1051.55498	-0.55551	-0.00029263	-0.23416	-0.00012335	-0.78967	-0.00041599	526.7846053123044	70.896	0.45585	71.631	71.453	71.908	0.73421					13	8	2	0	0	0	0.11849	1	26885	26885		61.602	27.2	1	7569400			51664	5434	37534	37838	50464	50464					0.03126019377805278
STKTGTAYTF	10	Unmodified	_STKTGTAYTF_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-SECPEP	A375_MHC_IP_R1	1	539.1663208007812	2	538.766571	1075.51859	-0.45221	-0.00024364	-0.27107	-0.00014604	-0.72328	-0.00038968	538.7663885088392	35.737	0.4099	35.737	35.522	35.932	0					14	7	2	0	0	0	0.41513	1	11927	11927		45.74	30.491	1	3988900			51665	2826	37535	37839	50465	50465					-0.01614857518916324
STKTGTAYTF	10	Unmodified	_STKTGTAYTF_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	A375_MHC_IP_R2	2	539.1663208007812	2	538.766571	1075.51859	-1.0731	-0.00057816	0.82336	0.0004436	-0.24975	-0.00013456	538.7668050638949	34.964	0.45385	35.727	35.475	35.929	0.76338					18	8	3	0	0	0	0.10198	1	12644	12644		63.227	34.146	1	2925000			51666	2826	37535	37839	50466	50466					-0.01614857518916324
STLFGFVKV	9	Unmodified	_STLFGFVKV_					0	0	0		ENST00000064778.8_1_11:73115379-73115817:-|nuORF	ENST00000064778.8_1_11:73115379-73115817:-|nuORF	ENST00000064778.8_1_11:73115379-73115817:-|nuORF	MSMS	A375_MHC_IP_R2	2	499.3181457519531	2	499.289485	996.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.054	1	20.665	20.165	21.165	0.61029								0	0	0	0.15486	1	6210	6210		4.756	0	1				51667	10063	37536	37840	50467	50467					0.06599832454003263
STLFGNTKPRK	11	Unmodified	_STLFGNTKPRK_					0	0	0		ENSG00000137440|ENST00000382333|FGFBP1	ENSG00000137440|ENST00000382333|FGFBP1	ENSG00000137440|ENST00000382333|FGFBP1	MULTI-MSMS	A375_MHC_IP_R1	1	417.30694580078125	3	416.906816	1247.69862	0.31742	0.00013233	-0.13078	-5.4522E-05	0.18664	7.7813E-05	416.906677992577	97.393	0.60529	97.393	97.086	97.691	0					25	11	3	0	0	0	0.45155	1	35771	35771		23.016	1.7743	1	3077600			51668	4882	37537	37841	50468	50468					0.08467866208752639
STLFGNTKPRK	11	Unmodified	_STLFGNTKPRK_					0	0	0		ENSG00000137440|ENST00000382333|FGFBP1	ENSG00000137440|ENST00000382333|FGFBP1	ENSG00000137440|ENST00000382333|FGFBP1	MULTI-MSMS	A375_MHC_IP_R2	2	417.306640625	3	416.906816	1247.69862	-0.093696	-3.9062E-05	0.049056	2.0452E-05	-0.04464	-1.8611E-05	416.9068410644076	96.451	0.4564	97.207	96.962	97.419	0.75587					18	8	3	0	0	0	0.60848	1	36608	36608		14.171	1.3148	1	2427300			51669	4882	37537	37841	50469	50469					0.08467866208752639
STLHSPEFF	9	Unmodified	_STLHSPEFF_					0	0	0			REV__nc|ENSG00000102445|Q9H714-1|RUBCNL	REV__nc|ENSG00000102445|Q9H714-1|RUBCNL	MSMS	A375_MHC_IP_R1	1	532.6978759765625	2	532.756007	1063.49746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.946	1	27.946	27.446	28.446	0								0	0	0	0.15486	1	8548	8548		12.532	1.0368	1		+		51670	17222	37538	37842	50470	50470					-0.031748228277592716
STLLTLTVRSS	11	Unmodified	_STLLTLTVRSS_					0	0	0		HIVEP1|p.S1866L|1|0.24|ENSG00000095951|chr6:12125392-12125392|C/T|missense_variant	HIVEP1|p.S1866L|1|0.24|ENSG00000095951|chr6:12125392-12125392|C/T|missense_variant	HIVEP1|p.S1866L|1|0.24|ENSG00000095951|chr6:12125392-12125392|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	589.2506103515625	2	589.342978	1176.6714	-0.54248	-0.00031971	-0.44923	-0.00026475	-0.99172	-0.00058446	589.3424433179216	130.9	5.1251	130.9	130.67	135.79	0					181	100	3	0	0	0	0.99647	1	51599	51599		6.6304	3.6351	1	105710000			51671	14125	37539	37843	50471	50471					0.09013337877695449
STLLTLTVRSS	11	Unmodified	_STLLTLTVRSS_					0	0	0		HIVEP1|p.S1866L|1|0.24|ENSG00000095951|chr6:12125392-12125392|C/T|missense_variant	HIVEP1|p.S1866L|1|0.24|ENSG00000095951|chr6:12125392-12125392|C/T|missense_variant	HIVEP1|p.S1866L|1|0.24|ENSG00000095951|chr6:12125392-12125392|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	589.7425537109375	2	589.342978	1176.6714	-0.61733	-0.00036382	0.12421	7.3201E-05	-0.49313	-0.00029062	589.3429091036026	128.94	3.0405	129.18	128.45	131.49	0.23947					241	59	6	0	0	0	0.73647	2	50534	50534;50993		2.7352	1.0826	1	1087700000			51672	14125	37539	37843	50472;50473	50472					0.09013337877695449
STLLTLTVRSS	11	Unmodified	_STLLTLTVRSS_					0	0	0		HIVEP1|p.S1866L|1|0.24|ENSG00000095951|chr6:12125392-12125392|C/T|missense_variant	HIVEP1|p.S1866L|1|0.24|ENSG00000095951|chr6:12125392-12125392|C/T|missense_variant	HIVEP1|p.S1866L|1|0.24|ENSG00000095951|chr6:12125392-12125392|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	589.342978	1176.6714	-0.54559	-0.00032154	-0.50219	-0.00029596	-1.0478	-0.0006175	589.3424749808562	130.81	4.2202	131.03	130.81	135.03	0.21419	0.062264	-2.6152E-05	NaN	6.6304	146	82	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101590000			51673	14125	37539	37843							0.09013337877695449
STLMPLTREEE	11	Unmodified	_STLMPLTREEE_					0	0	0			REV__nc|ENSG00000141562|Q9UHQ1-2|NARF	REV__nc|ENSG00000141562|Q9UHQ1-2|NARF	MULTI-SECPEP	A375_MHC_IP_R1	1	436.3159484863281	3	435.883349	1304.62822	0.35483	0.00015466	0.15065	6.5666E-05	0.50548	0.00022033	435.8834343756377	69.554	0.75988	69.554	69.173	69.933	0					29	14	3	0	0	0	0.99732	1	25334	25334		4.1166	1.2733	1	7228600	+		51674	27266	37540	37844	50474	50474					-0.01191219961879142
STLPDRLHE	9	Unmodified	_STLPDRLHE_					0	0	0			REV__ENSG00000197948|ENST00000435817|FCHSD1	REV__ENSG00000197948|ENST00000435817|FCHSD1	MULTI-SECPEP	A375_MHC_IP_R2	2	356.9205322265625	3	356.520851	1066.54072	-0.64566	-0.00023019	-0.15324	-5.4632E-05	-0.7989	-0.00028482	356.520771054771	25.122	0.6608	25.766	25.568	26.229	0.64368					37	12	4	0	0	0	0.37663	1	8353	8353		40.725	5.6452	1	19826000	+		51675	22330	37541	37845	50475	50475					0.010113669495240174
STLPDVTEV	9	Unmodified	_STLPDVTEV_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	A375_MHC_IP_R2	2	960.8737182617188	1	960.488418	959.481142	-0.1174	-0.00011276	-0.63357	-0.00060854	-0.75097	-0.0007213	960.4876547378748	77.345	0.40804	78.088	77.857	78.265	0.74293					12	7	2	0	0	0	0.077132	1	29309	29309		54.774	20.671	1	2642400			51676	1066	37542	37846	50476	50476					-0.00021948784524283838
STLPDVTEV	9	Unmodified	_STLPDVTEV_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MATCH	A375_MHC_IP_R1	1		1	960.488418	959.481142	0.16754	0.00016092	-0.43717	-0.00041989	-0.26963	-0.00025897	960.4880039841039	78.005	0.45786	78.005	77.793	78.251	0	-0.041639	0.00010343	NaN	54.774	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2836700			51677	1066	37542	37846							-0.00021948784524283838
STLPPRTYW	9	Unmodified	_STLPPRTYW_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-SECPEP	A375_MHC_IP_R2	2	560.20703125	2	560.792924	1119.57129	-0.9342	-0.00052389	0.20276	0.00011371	-0.73144	-0.00041018	560.7928190131454	60.948	1.7675	61.693	61.109	62.876	0.74503					44	34	2	0	0	0	0.63327	1	23198	23198		13.042	6.8367	1	2557900			51678	3490	37543	37847	50477	50477					0.016291453345502305
STLPTSRR	8	Unmodified	_STLPTSRR_					0	0	0			REV__ENSG00000170260|ENST00000335870|ZNF212	REV__ENSG00000170260|ENST00000335870|ZNF212	MSMS	A375_MHC_IP_R1	1	459.2944030761719	2	459.261791	916.509028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.054	1	70.054	69.554	70.554	0								0	0	0	0.16876	1	25430	25430		6.7232	0	1		+		51679	20978	37544	37848	50478	50478					0.047434189862428866
STLPTSRR	8	Unmodified	_STLPTSRR_					0	0	0			REV__ENSG00000170260|ENST00000335870|ZNF212	REV__ENSG00000170260|ENST00000335870|ZNF212	MSMS	A375_MHC_IP_R2	2	459.2943115234375	2	459.261791	916.509028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.395	1	70.129	69.629	70.629	0.73421								0	0	0	0.16876	1	26297	26297		6.7232	0	1		+		51680	20978	37544	37848	50479	50479					0.047434189862428866
STLPVEAR	8	Unmodified	_STLPVEAR_					0	0	0			REV__SVA_D_dup914|chr11:75876850-75878935:-|1.3000520484701088|0.1350535341105196|3.27|462.0|68|2|anti-sense	REV__SVA_D_dup914|chr11:75876850-75878935:-|1.3000520484701088|0.1350535341105196|3.27|462.0|68|2|anti-sense	MULTI-MSMS	A375_MHC_IP_R1	1	437.1451110839844	2	436.745442	871.476331	-0.49231	-0.00021502	0.15626	6.8248E-05	-0.33605	-0.00014677	436.7454554793684	30.039	0.35194	30.039	29.899	30.251	0					10	6	2	0	0	0	0.7011	1	9513	9513		34.402	0.29928	1	10476000	+		51681	28068	37545	37849	50480	50480					0.035452118633770624
STLRELGQTW	10	Unmodified	_STLRELGQTW_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.R7429Ifs*19|1|0.07|ENSG00000131018|chr6:152214911-152214966|TCTTTCTGTAGTCTGAGAGGAGATCAGAGACCAATGGCGGTTCAGATTCTGCATTC/-|frameshift_variant;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-2|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	A375_MHC_IP_R1	1	596.2118530273438	2	595.811845	1189.60914	-0.55753	-0.00033218	0.32529	0.00019381	-0.23224	-0.00013837	595.8122182603431	66.064	0.558	66.064	65.768	66.326	0					28	10	4	0	0	0	0.40545	1	23899	23899		47.732	11.605	1	4264600			51682	4300	37546	37850	50481	50481					0.021916115293834082
STLRELGQTW	10	Unmodified	_STLRELGQTW_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.R7429Ifs*19|1|0.07|ENSG00000131018|chr6:152214911-152214966|TCTTTCTGTAGTCTGAGAGGAGATCAGAGACCAATGGCGGTTCAGATTCTGCATTC/-|frameshift_variant;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-2|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	A375_MHC_IP_R2	2	596.2116088867188	2	595.811845	1189.60914	-0.63997	-0.0003813	-0.15095	-8.9935E-05	-0.79091	-0.00047123	595.8118134114545	65.177	0.50811	65.915	65.664	66.172	0.73812					26	9	4	0	0	0	0.2729	1	24709	24709		47.732	9.758	1	4486800			51683	4300	37546	37850	50482	50482					0.021916115293834082
STLTNHKRI	9	Unmodified	_STLTNHKRI_					0	0	0		ENSG00000197013|ENST00000358491|ZNF429;ENST00000429248.1_1_7:56706781-56707144:-|nuORF;ENSG00000241149|ENST00000330020|ZNF722;ENSG00000223614|ENST00000429565|ZNF735;ENSG00000182111|ENST00000420713|ZNF716	ENSG00000197013|ENST00000358491|ZNF429	ENSG00000197013|ENST00000358491|ZNF429	MULTI-SECPEP	A375_MHC_IP_R1	1	534.6770629882812	2	535.309272	1068.60399	-0.93789	-0.00050206	0.2167	0.000116	-0.72118	-0.00038606	535.309369720787	25.808	0.40404	25.808	25.714	26.118	0					11	7	2	0	0	0	0.76827	1	7569	7569		6.7232	0	1	1614000			51684	9102	37547	37851	50483	50483					0.07243352457408037
STLTRLVTSY	10	Unmodified	_STLTRLVTSY_					0	0	0			REV__nc|ENSG00000164347|Q969S9-4|GFM2	REV__nc|ENSG00000164347|Q969S9-4|GFM2	MULTI-SECPEP	A375_MHC_IP_R1	1	570.62939453125	2	570.816596	1139.61864	-0.29443	-0.00016807	1.2228	0.00069801	0.9284	0.00052994	571.3188092910143	73.497	0.40469	73.497	73.285	73.69	0					11	7	2	0	0	0	0.91556	1	26690	26690		6.2058	0	1	506800	+		51685	20488	37548	37852	50484	50484					0.054413798149198556
STLTTREL	8	Unmodified	_STLTTREL_					0	0	0			REV__nc|ENSG00000090615|Q08378-4|GOLGA3	REV__nc|ENSG00000090615|Q08378-4|GOLGA3	MULTI-MSMS	A375_MHC_IP_R2	2	460.6531066894531	2	460.756007	919.497461	-0.97303	-0.00044833	-2.6587	-0.001225	-3.6317	-0.0016733	460.75471906883996	52.889	0.30278	53.64	53.487	53.79	0.75105					8	5	2	0	0	0	0.77583	1	19987	19987		10.074	2.7847	1	740780	+		51686	16929	37549	37853	50485	50485					0.0344917717224007
STLVDKGII	9	Unmodified	_STLVDKGII_					0	0	0			REV__nc|ENSG00000088367|Q9H4G0-4|EPB41L1	REV__nc|ENSG00000088367|Q9H4G0-4|EPB41L1	MULTI-SECPEP	A375_MHC_IP_R1	1	473.1510925292969	2	473.2844	944.554247	-0.21968	-0.00010397	0.16778	7.9408E-05	-0.051902	-2.4565E-05	473.28446717283845	45.58	0.60574	45.58	45.284	45.89	0					29	11	4	0	0	0	0.059859	1	16020	16020		53.833	0	1	25921000	+		51687	16884	37550	37854	50486	50486					0.079752247287729
STMNPWTQAP	10	Unmodified	_STMNPWTQAP_					0	0	0			REV__ENSG00000186103|ENST00000334384|ARGFX	REV__ENSG00000186103|ENST00000334384|ARGFX	MULTI-SECPEP	A375_MHC_IP_R1	1	378.9580078125	3	378.174574	1131.50189	0.61912	0.00023413	0.27267	0.00010312	0.89179	0.00033725	378.50920531592396	21.654	0.25309	21.654	21.555	21.808	0					8	4	2	0	0	0	0.91909	1	5737	5737		3.0723	2.4454	1	1437400	+		51688	21946	37551	37855	50487	50487					-0.0585968167649753
STMSHMIQF	9	Unmodified	_STMSHMIQF_					0	0	0		nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN;RELN|p.E1720Kfs*109|1|0.28|ENSG00000189056|chr7:103565330-103565330|C/-|frameshift_variant;RELN|p.L564F|1|0.25|ENSG00000189056|chr7:103652624-103652624|G/A|missense_variant	nc|ENSG00000189056|P78509-3|RELN	nc|ENSG00000189056|P78509-3|RELN	MULTI-MSMS	A375_MHC_IP_R2	2	541.1639404296875	2	541.243895	1080.47324	-0.66772	-0.0003614	-0.57629	-0.00031191	-1.244	-0.00067331	541.2436024067098	43.746	1.0609	44.515	44.228	45.289	0.7691					30	20	2	0	0	0	0.5339	1	16327	16327		18.135	1.1927	1	2222700			51689	8956	37552	37856	50488	50488					-0.06378122577302747
STNKGKPSV	9	Unmodified	_STNKGKPSV_					0	0	0			REV__ENST00000470974.1_1_2:85922010-85922247:+|nuORF	REV__ENST00000470974.1_1_2:85922010-85922247:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	459.66864013671875	2	459.256174	916.497795	-0.26358	-0.00012105	-0.46825	-0.00021505	-0.73183	-0.0003361	459.2559197058639	47.997	0.25131	48.758	48.532	48.783	0.76128					7	4	2	0	0	0	0.38603	1	17989	17989		25.399	0	1	1306400	+		51690	25111	37553	37857	50489	50489					0.03620596892085359
STPAPPPLDWG	11	Unmodified	_STPAPPPLDWG_					0	0	0			REV__ENSG00000105464|ENST00000263269|GRIN2D	REV__ENSG00000105464|ENST00000263269|GRIN2D	MSMS	A375_MHC_IP_R1	1	569.1858520507812	2	569.282389	1136.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.8	1	135.8	135.3	136.3	0								0	0	0	0.16249	1	52330	52330		5.7319	0	1		+		51691	17386	37554	37858	50490	50490					-0.012588647649636187
STPDHIREI	9	Unmodified	_STPDHIREI_					0	0	0		ENSG00000116984|ENST00000366577|MTR;nc|ENSG00000116984|Q99707-2|MTR	ENSG00000116984|ENST00000366577|MTR	ENSG00000116984|ENST00000366577|MTR	MULTI-MSMS	A375_MHC_IP_R1	1	356.9206237792969	3	356.520851	1066.54072	-0.18131	-6.4642E-05	-0.13087	-4.6657E-05	-0.31218	-0.0001113	356.5207766908301	25.746	0.71055	25.746	25.511	26.221	0					36	13	4	0	0	0	0.04093	1	7573	7573		55.249	12.936	1	24269000			51692	3448	37555	37859	50491	50491					0.010113669495467548
STPDHIREI	9	Unmodified	_STPDHIREI_					0	0	0		ENSG00000116984|ENST00000366577|MTR;nc|ENSG00000116984|Q99707-2|MTR	ENSG00000116984|ENST00000366577|MTR	ENSG00000116984|ENST00000366577|MTR	MULTI-SECPEP	A375_MHC_IP_R1	1	534.6770629882812	2	534.277638	1066.54072	-0.87302	-0.00046644	0.14304	7.6422E-05	-0.72999	-0.00039001	534.2776659755523	25.755	0.55659	25.755	25.562	26.118	0					31	10	4	0	0	0	0.09145	1	7569	7569		69.338	27.244	1	35382000			51693	3448	37555	37859	50492	50492					0.010113669495467548
STPDHIREI	9	Unmodified	_STPDHIREI_					0	0	0		ENSG00000116984|ENST00000366577|MTR;nc|ENSG00000116984|Q99707-2|MTR	ENSG00000116984|ENST00000366577|MTR	ENSG00000116984|ENST00000366577|MTR	MULTI-MSMS	A375_MHC_IP_R2	2	534.6767578125	2	534.277638	1066.54072	-1.2126	-0.00064788	-0.029013	-1.5501E-05	-1.2416	-0.00066338	534.2775585295467	25.13	0.6608	25.774	25.568	26.229	0.64368					31	12	3	0	0	0	0.017012	1	8351	8351		87.258	45.164	1	26702000			51694	3448	37555	37859	50493	50493					0.010113669495467548
STPEKILRR	9	Unmodified	_STPEKILRR_					0	0	0			REV__ARSF|p.G394R|1|0.9|ENSG00000062096|chrX:3103839-3103839|G/A|missense_variant	REV__ARSF|p.G394R|1|0.9|ENSG00000062096|chrX:3103839-3103839|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	550.6165161132812	2	550.332747	1098.65094	-0.58229	-0.00032045	-0.042948	-2.3636E-05	-0.62524	-0.00034409	550.3328213829203	25.434	0.3067	25.434	25.306	25.613	0					6	5	2	0	0	0	0.75274	1	7370	7370		3.9444	0	1	1819400	+		51695	15454	37556	37860	50494	50494					0.10556212008555121
STPEQPLY	8	Unmodified	_STPEQPLY_					0	0	0			REV__ENSG00000160447|ENST00000291906|PKN3	REV__ENSG00000160447|ENST00000291906|PKN3	MULTI-SECPEP	A375_MHC_IP_R1	1	467.10028076171875	2	467.729458	933.444362	-0.32692	-0.00015291	-0.26544	-0.00012415	-0.59236	-0.00027707	467.72942904297264	61.381	0.45997	61.381	61.126	61.585	0					11	8	2	0	0	0	0.97144	1	22127	22127		9.3474	4.1168	1	1700200	+		51696	20171	37557	37861	50495	50495					-0.02502200610433647
STPGCELLGR	10	Unmodified	_STPGCELLGR_					0	0	0			REV__ENST00000369886.7_1_20:62606541-62606862:-|nuORF	REV__ENST00000369886.7_1_20:62606541-62606862:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	517.6600952148438	2	516.760766	1031.50698	-1.2101	-0.00062533	0.19851	0.00010258	-1.0116	-0.00052275	517.2618252177035	52.638	1.2169	53.39	52.677	53.894	0.75225					41	23	3	0	0	0	0.6806	1	19875	19875		14.838	0	1	6685200	+		51697	24022	37558	37862	50496	50496					-0.007513778138672933
STPHASILSV	10	Unmodified	_STPHASILSV_					0	0	0		TBX19|p.S329F|1|0.12|ENSG00000143178|chr1:168308811-168308811|C/T|missense_variant;ENST00000465440.1_1_1:168277945-168282237:+|nuORF;ENSG00000143178|ENST00000367821|TBX19	TBX19|p.S329F|1|0.12|ENSG00000143178|chr1:168308811-168308811|C/T|missense_variant	TBX19|p.S329F|1|0.12|ENSG00000143178|chr1:168308811-168308811|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	506.6763000488281	2	506.277106	1010.53966	-1.0398	-0.0005264	0.087925	4.4514E-05	-0.95183	-0.00048189	506.2770638091212	61.121	1.312	61.866	61.464	62.776	0.74504					82	25	5	0	0	0	0.48072	1	23112	23112		30.637	0	1	45828000			51698	5355	37559	37863	50497	50497					0.03481152580627622
STPIMYWFP	9	Unmodified	_STPIMYWFP_					0	0	0		ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	MULTI-SECPEP	A375_MHC_IP_R2	2	380.5999450683594	3	381.184411	1140.5314	-0.41436	-0.00015795	0.27012	0.00010296	-0.14425	-5.4985E-05	381.18450082094887	26.423	0.35477	27.083	26.907	27.262	0.65992					10	6	2	0	0	0	0.74651	1	8982	8982		2.7352	0	1	1912300			51699	1312	37560	37864	50498	50498					-0.03324117660372394
STPLAPSEQPL	11	Unmodified	_STPLAPSEQPL_					0	0	0			REV__ENSG00000148400|ENST00000651671|NOTCH1	REV__ENSG00000148400|ENST00000651671|NOTCH1	MULTI-SECPEP	A375_MHC_IP_R1	1	380.9363098144531	3	380.536278	1138.587	0.13674	5.2036E-05	0.02881	1.0963E-05	0.16555	6.2999E-05	380.5362567794221	27.912	0.50443	27.912	27.634	28.138	0					21	9	3	0	0	0	0.98336	1	8542	8542		14.838	0.66718	1	7846500	+		51700	19629	37561	37865	50499	50499					0.023253870609551086
STPVAREL	8	Unmodified	_STPVAREL_					0	0	0		nc|ENSG00000058600|Q9NVU0-3|POLR3E;nc|ENSG00000058600|Q9NVU0-2|POLR3E;nc|ENSG00000058600|Q9NVU0-5|POLR3E;ENST00000564061.5_1_16:22308800-22337695:+|nuORF;nc|ENSG00000058600|Q9NVU0-4|POLR3E;ENSG00000058600|ENST00000299853|POLR3E	nc|ENSG00000058600|Q9NVU0-3|POLR3E	nc|ENSG00000058600|Q9NVU0-3|POLR3E	MULTI-MSMS	A375_MHC_IP_R2	2	437.1451416015625	2	436.745442	871.476331	-1.1183	-0.00048839	0.67661	0.00029551	-0.44164	-0.00019288	436.7455292698267	29.372	0.4551	30.07	29.88	30.335	0.69872					13	8	2	0	0	0	0.689	1	10245	10245		38.176	4.0731	1	7607200			51701	1294	37562	37866	50500	50500					0.03545211863365694
STPVAREL	8	Unmodified	_STPVAREL_					0	0	0		nc|ENSG00000058600|Q9NVU0-3|POLR3E;nc|ENSG00000058600|Q9NVU0-2|POLR3E;nc|ENSG00000058600|Q9NVU0-5|POLR3E;ENST00000564061.5_1_16:22308800-22337695:+|nuORF;nc|ENSG00000058600|Q9NVU0-4|POLR3E;ENSG00000058600|ENST00000299853|POLR3E	nc|ENSG00000058600|Q9NVU0-3|POLR3E	nc|ENSG00000058600|Q9NVU0-3|POLR3E	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	436.745442	871.476331	-0.49231	-0.00021502	0.15626	6.8248E-05	-0.33605	-0.00014677	436.7454554793684	30.039	0.35194	30.039	29.899	30.251	0	-0.015409	-9.8565E-05	NaN	38.176	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10476000			51702	1294	37562	37866							0.03545211863365694
STPVIRTF	8	Unmodified	_STPVIRTF_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	MULTI-SECPEP	A375_MHC_IP_R1	1	461.1633605957031	2	460.763635	919.512717	-0.15359	-7.077E-05	0.3574	0.00016468	0.20381	9.3909E-05	460.76374725918595	52.06	1.2703	52.06	51.676	52.946	0					66	24	4	0	0	0	0.68299	1	18428	18428		29.841	10.584	1	82366000			51703	1217	37563	37867	50501	50501					0.04974088760104678
STPVIRTF	8	Unmodified	_STPVIRTF_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	MULTI-SECPEP	A375_MHC_IP_R2	2	461.163330078125	2	460.763635	919.512717	-0.59225	-0.00027289	0.079245	3.6513E-05	-0.51301	-0.00023638	460.7636356361633	51.188	1.115	51.94	51.562	52.677	0.75225					49	21	3	0	0	0	0.46955	1	19201	19201		56.177	10.156	1	97604000			51704	1217	37563	37867	50502	50502					0.04974088760104678
STQFNENEL	9	Unmodified	_STQFNENEL_					0	0	0			REV__SLC9B1|p.D13N|1|0.32|ENSG00000164037|chr4:102991675-102991675|C/T|missense_variant	REV__SLC9B1|p.D13N|1|0.32|ENSG00000164037|chr4:102991675-102991675|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	541.739501953125	2	541.24346	1080.47237	-0.66772	-0.0003614	0.22594	0.00012229	-0.44178	-0.00023911	541.2436024067098	43.746	1.0609	44.515	44.228	45.289	0.7691					30	20	2	0	0	0	0.55818	1	16334	16334		16.942	4.4107	1	2222700	+		51705	28008	37564	37868	50503	50503					-0.0646492242099157
STQGANLPDF	10	Unmodified	_STQGANLPDF_					0	0	0		ENSG00000130749|ENST00000253048|ZC3H4	ENSG00000130749|ENST00000253048|ZC3H4	ENSG00000130749|ENST00000253048|ZC3H4	MULTI-MSMS	A375_MHC_IP_R1	1	525.70458984375	2	525.248546	1048.48254	-0.64607	-0.00033935	-0.23969	-0.0001259	-0.88576	-0.00046524	525.2484193264663	94.634	0.4078	94.634	94.446	94.853	0					12	7	2	0	0	0	0.70793	1	34861	34861		8.7454	0.83525	1	1885900			51706	4277	37565	37869	50504	50504					-0.03976314695773908
STQKAYEDVP	10	Unmodified	_STQKAYEDVP_					0	0	0		ENSG00000164500|ENST00000297001|SPATA48	ENSG00000164500|ENST00000297001|SPATA48	ENSG00000164500|ENST00000297001|SPATA48	MULTI-MSMS	A375_MHC_IP_R2	2	569.7152099609375	2	569.274761	1136.53497	-0.43996	-0.00025046	-0.0091773	-5.2244E-06	-0.44914	-0.00025568	569.2747236221456	44.919	1.1156	45.688	45.441	46.556	0.76909					40	21	3	0	0	0	0.6502	1	16842	16842		17.113	0	1	9670400			51707	6844	37566	37870	50505	50505					-0.02783776352816858
STQLNRLVA	9	Unmodified	_STQLNRLVA_					0	0	0			REV__ENSG00000214946|ENST00000437605|TBC1D26	REV__ENSG00000214946|ENST00000437605|TBC1D26	MULTI-MSMS	A375_MHC_IP_R1	1	502.3894958496094	2	501.290548	1000.56654	-0.23905	-0.00011983	0.17853	8.9497E-05	-0.060518	-3.0337E-05	501.29065703761546	39.295	0.96291	39.295	38.882	39.845	0					31	18	3	0	0	0	0.64808	1	13345	13345		11.64	1.5664	1	16044000	+		51708	22667	37567	37871	50506	50506					0.06628261191792717
STQNNLNLVPK	11	Unmodified	_STQNNLNLVPK_					0	0	0		tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1	tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1	tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	410.2945861816406	3	409.894577	1226.6619	-0.19969	-8.1854E-05	0.42032	0.00017229	0.22062	9.0433E-05	409.8946563552779	19.343	0.28278	19.343	19.238	19.521	0					10	5	3	0	0	0	0.73189	1	4798	4798		3.5927	0	1	10070000			51709	29672	37568	37872	50507	50507					0.05763569592159001
STQSPSPSSF	10	Unmodified	_STQSPSPSSF_					0	0	0			REV__nc|ENSG00000162599|Q12857-2|NFIA	REV__nc|ENSG00000162599|Q12857-2|NFIA	MULTI-SECPEP	A375_MHC_IP_R2	2	513.1331787109375	2	512.732729	1023.4509	-0.86454	-0.00044328	0.95712	0.00049075	0.092585	4.7471E-05	512.7334385668323	97.733	0.5088	98.489	98.178	98.687	0.75586					21	9	3	0	0	0	0.70528	1	37087	37087		20.415	0	1	1991800	+		51710	20270	37569	37873	50508	50508					-0.05988307449695185
STQTRFFSD	9	Unmodified	_STQTRFFSD_					0	0	0			REV__ENSG00000174373|ENST00000680220|RALGAPA1	REV__ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-MSMS	A375_MHC_IP_R1	1	544.6614990234375	2	544.753995	1087.49344	-0.29261	-0.0001594	0.2828	0.00015406	-0.0098151	-5.3468E-06	544.7542057795944	48.096	2.2831	48.096	46.952	49.235	0					86	44	2	0	0	0	0.53367	1	17393	17393		18.146	0	1	6448100	+		51711	21281	37570	37874	50509	50509					-0.04680912321487085
STRAWWCTP	9	Unmodified	_STRAWWCTP_					0	0	0		ENST00000565034.1_1_16:69375146-69375227:+|nuORF;ENST00000254940.9_1_16:69375164-69375481:+|nuORF;ENST00000562523.1_1_16:69375146-69375552:+|nuORF	ENST00000565034.1_1_16:69375146-69375227:+|nuORF	ENST00000565034.1_1_16:69375146-69375227:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	369.2341613769531	3	369.839526	1106.49675	0.17917	6.6263E-05	-0.40034	-0.00014806	-0.22117	-8.1797E-05	369.83928934883676	44.88	0.56118	45.649	45.34	45.901	0.7691					22	10	3	0	0	0	0.76187	1	16782	16782		0.86438	0	1	2762800			51712	10230	37571	37875	50510	50510					-0.05223940748487621
STREDVFFS	9	Unmodified	_STREDVFFS_					0	0	0			REV__ENSG00000186910|ENST00000334708|SERPINA11	REV__ENSG00000186910|ENST00000334708|SERPINA11	MULTI-SECPEP	A375_MHC_IP_R1	1	544.6561279296875	2	544.256371	1086.49819	-0.70149	-0.00038179	-0.7142	-0.00038871	-1.4157	-0.0007705	544.2562117574635	65.664	0.71075	65.664	65.462	66.173	0					28	13	3	0	0	0	0.75466	1	23777	23777		4.3292	0.73274	1	3018100	+		51713	21996	37572	37876	50511	50511					-0.04160028178716857
STRETRHLS	9	Unmodified	_STRETRHLS_					0	0	0			REV__HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|157|3|sense	REV__HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|157|3|sense	MULTI-SECPEP	A375_MHC_IP_R1	1	544.3651733398438	2	543.786161	1085.55777	-0.56136	-0.00030526	-3.3484	-0.0018208	-3.9097	-0.0021261	544.286314702826	59.495	0.45652	59.495	59.295	59.752	0					10	8	2	0	0	0	0.73363	1	21326	21326		3.5965	0	1	962800	+		51714	26737	37573	37877	50512	50512					0.018412875553167396
STRGISQLW	9	Unmodified	_STRGISQLW_					0	0	0		nc|ENSG00000196313|Q96HA1-2|POM121;ENSG00000272391|ENST00000615331|POM121C;nc|ENSG00000196313|Q96HA1-3|POM121;nc|ENSG00000272391|A8CG34|POM121C;ENSG00000196313|ENST00000434423|POM121;ENST00000479864.1_1_7:75054840-75066915:-|nuORF	nc|ENSG00000196313|Q96HA1-2|POM121	nc|ENSG00000196313|Q96HA1-2|POM121	MULTI-MSMS	A375_MHC_IP_R2	2	524.6821899414062	2	524.282723	1046.55089	-0.67198	-0.00035231	0.70721	0.00037078	0.035224	1.8467E-05	524.2824888320586	66.227	0.71527	66.965	66.68	67.395	0.7379					34	13	4	0	0	0	0.27064	1	25090	25090		32.786	2.1491	1	6398900			51715	9026	37574	37878	50513	50513					0.02947974674748366
STRKFNRRY	9	Unmodified	_STRKFNRRY_					0	0	0			REV__ENSG00000203926|ENST00000370518|SPANXA2	REV__ENSG00000203926|ENST00000370518|SPANXA2	MULTI-MSMS	A375_MHC_IP_R1	1	410.2889099121094	3	409.895022	1226.66324	-0.19969	-8.1854E-05	-0.66728	-0.00027351	-0.86697	-0.00035537	409.8946563552779	19.343	0.28278	19.343	19.238	19.521	0					10	5	3	0	0	0	0.59266	1	4752	4752		15.248	4.449	1	10070000	+		51716	22191	37575	37879	50514	50514					0.0589724847159232
STRKFNRRY	9	Unmodified	_STRKFNRRY_					0	0	0			REV__ENSG00000203926|ENST00000370518|SPANXA2	REV__ENSG00000203926|ENST00000370518|SPANXA2	MULTI-MATCH	A375_MHC_IP_R2	2		3	409.895022	1226.66324	-0.24942	-0.00010224	1.021	0.00041851	0.77159	0.00031627	409.8954029380746	18.855	0.16035	19.458	19.423	19.583	0.60308	0.057625	0.0017342	NaN	15.248	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12067000	+		51717	22191	37575	37879							0.0589724847159232
STRKKRRR	8	Unmodified	_STRKKRRR_					0	0	0		ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4;REV__nc|ENSG00000143190|P14859-4|POU2F1	ENSG00000139767|ENST00000267260|SRRM4	MSMS	A375_MHC_IP_R1	1	363.2453918457031	3	363.23549	1086.68464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.851	1	33.851	33.351	34.351	0								0	0	0	0.16876	1	11093	11093		3.5965	0	1				51718	5110;19338	37576	37880	50515	50515					0.14476678290975542
STRNDFESY	9	Unmodified	_STRNDFESY_					0	0	0			REV__ENST00000477091.5_1_21:35445925-35497723:+|nuORF	REV__ENST00000477091.5_1_21:35445925-35497723:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	560.2156982421875	2	559.741085	1117.46762	-0.50325	-0.00028169	-4.3082	-0.0024115	-4.8115	-0.0026932	559.738757718185	57.781	0.65957	57.781	57.415	58.075	0					21	12	2	0	0	0	0.14922	2	20764	20764;20791		41.84	17.459	1	3810400	+		51719	25195	37577	37881	50516;50517	50516					-0.08641806563764476
STRPKPLQKL	10	Unmodified	_STRPKPLQKL_					0	0	0			REV__ENSG00000187550|ENST00000413299|SBK2	REV__ENSG00000187550|ENST00000413299|SBK2	MULTI-MSMS	A375_MHC_IP_R2	2	390.31146240234375	3	389.91179	1166.71354	-0.91201	-0.0003556	0.4117	0.00016053	-0.50031	-0.00019508	389.9119028663622	28.891	1.2512	29.59	29.183	30.434	0.69872					44	24	2	0	0	0	0.70174	2	10228	10228;10304		11.518	5.2835	1	18902000	+		51720	22027	37578	37882	50518;50519	50518					0.1368535807673652
STRPSLKQI	9	Unmodified	_STRPSLKQI_					0	0	0			REV__ENSG00000197798|ENST00000533050|FAM118B	REV__ENSG00000197798|ENST00000533050|FAM118B	MULTI-MSMS	A375_MHC_IP_R2	2	516.3937377929688	2	515.306198	1028.59784	-1.0655	-0.00054908	0.42777	0.00022043	-0.63776	-0.00032864	515.3063071332109	38.197	0.41002	38.971	38.739	39.149	0.77451					16	7	3	0	0	0	0.41409	1	14011	14011		24.021	7.8715	1	8913700	+		51721	22316	37579	37883	50520	50520					0.08468834225891442
STRQCRRHL	9	Unmodified	_STRQCRRHL_					0	0	0			REV__nc|ENSG00000134452|Q8NFZ0-2|FBH1	REV__nc|ENSG00000134452|Q8NFZ0-2|FBH1	MULTI-MSMS	A375_MHC_IP_R2	2	386.585693359375	3	386.208724	1155.60434	-0.16053	-6.1996E-05	0.042372	1.6364E-05	-0.11815	-4.5632E-05	386.2085621559482	30.901	0.45362	31.62	31.367	31.821	0.71857					20	8	3	0	0	0	0.69884	1	10929	10929		7.1017	0	1	4564800	+		51722	27235	37580	37884	50521	50521					0.032764489056489765
STRSGHVLYSG	11	Unmodified	_STRSGHVLYSG_					0	0	0		nc|ENSG00000215568|Q2WGN9|GAB4	nc|ENSG00000215568|Q2WGN9|GAB4	nc|ENSG00000215568|Q2WGN9|GAB4	MULTI-SECPEP	A375_MHC_IP_R2	2	388.9315490722656	3	388.531638	1162.57309	-0.22802	-8.8593E-05	0.1634	6.3484E-05	-0.064624	-2.5109E-05	388.5316153428388	32.864	0.66021	33.601	33.317	33.977	0.73692					27	12	3	0	0	0	0.9574	1	11714	11714		8.2864	2.7631	1	4991200			51723	14903	37581	37885	50522	50522					-0.0016984564751965081
STRSWKRM	8	Unmodified	_STRSWKRM_					0	0	0		ENST00000532826.5_1_1:236689310-236702461:+|nuORF;ENST00000366583.6_1_1:236689310-236706138:+|nuORF	ENST00000532826.5_1_1:236689310-236702461:+|nuORF	ENST00000532826.5_1_1:236689310-236702461:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	525.6788940429688	2	526.276918	1050.53928	-0.2593	-0.00013646	-1.5271	-0.00080366	-1.7864	-0.00094013	526.2759944146347	43.758	0.55418	44.527	44.329	44.883	0.7691					22	10	3	0	0	0	0.972	1	16279	16279		2.0598	0	1	2031700			51724	11060	37582	37886	50523	50523					0.01603454379755931
STRVLCFV	8	Unmodified	_STRVLCFV_					0	0	0			REV__nc|ENSG00000164270|Q13639-7|HTR4	REV__nc|ENSG00000164270|Q13639-7|HTR4	MSMS	A375_MHC_IP_R1	1	462.6505126953125	2	462.752213	923.489873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.762	1	30.762	30.262	31.262	0								0	0	0	0.16876	1	9806	9806		9.3474	3.587	1		+		51725	20473	37583	37887	50524	50524					0.025067463709660842
STSANCSHQV	10	Unmodified	_STSANCSHQV_					0	0	0		ENSG00000171109|ENST00000471841|MFN1;nc|ENSG00000171109|Q8IWA4-3|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MSMS	A375_MHC_IP_R2	2	517.2055053710938	2	517.222005	1032.42946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.499	1	39.274	38.774	39.774	0.77451								0	0	0	0.15308	1	14174	14174		10.824	0.75	1				51726	7575	37584	37888	50525	50525					-0.08546015750084734
STSCQLPDPF	10	Unmodified	_STSCQLPDPF_					0	0	0			REV__nc|ENSG00000205726|Q15811-5|ITSN1	REV__nc|ENSG00000205726|Q15811-5|ITSN1	MSMS	A375_MHC_IP_R2	2	547.7029418945312	2	547.744782	1093.47501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.666	1	33.403	32.903	33.903	0.73692								0	0	0	0.15265	1	11647	11647		12.241	2.0573	1		+		51727	27460	37585	37889	50526	50526					-0.06798790287712109
STSDVVRQY	9	Unmodified	_STSDVVRQY_					0	0	0		nc|ENSG00000135931|Q7Z3E5-2|ARMC9;ENSG00000135931|ENST00000611582|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	MULTI-MSMS	A375_MHC_IP_R1	1	528.1613159179688	2	527.76182	1053.50909	-0.72925	-0.00038487	0.084148	4.441E-05	-0.6451	-0.00034046	527.761838873367	27.974	0.60399	27.974	27.735	28.339	0					32	11	4	0	0	0	1.1722E-06	1	8549	8549		215.27	147.19	1	39350000			51728	4730	37586	37890	50527	50527					-0.015526258044246788
STSDVVRQY	9	Unmodified	_STSDVVRQY_					0	0	0		nc|ENSG00000135931|Q7Z3E5-2|ARMC9;ENSG00000135931|ENST00000611582|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	MULTI-MSMS	A375_MHC_IP_R2	2	528.1614990234375	2	527.76182	1053.50909	-0.42599	-0.00022482	-0.46362	-0.00024468	-0.88961	-0.0004695	527.7615767739303	27.394	0.50681	28.073	27.895	28.401	0.67857					30	9	4	0	0	0	1.3323E-25	1	9338	9338		258.11	183.19	1	40081000			51729	4730	37586	37890	50528	50528					-0.015526258044246788
STSGHVELY	9	Unmodified	_STSGHVELY_					0	0	0		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-SECPEP	A375_MHC_IP_R1	1	496.13720703125	2	496.737814	991.461075	-0.40655	-0.00020195	0.2233	0.00011092	-0.18325	-9.1027E-05	496.7380509179332	34.714	0.25232	34.714	34.507	34.759	0					8	4	2	0	0	0	0.58271	1	11466	11466		20.454	3.5113	1	1841300			51730	5103	37587	37891	50529	50529					-0.03499699724488892
STSGHVELY	9	Unmodified	_STSGHVELY_					0	0	0		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-MATCH	A375_MHC_IP_R2	2		2	496.737814	991.461075	-0.95952	-0.00047663	1.6247	0.00080705	0.66519	0.00033043	496.7386678079639	33.908	0.30309	34.66	34.5	34.803	0.75225	-0.026526	0.0012272	NaN	20.454	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1778100			51731	5103	37587	37891							-0.03499699724488892
STSHDDFKF	9	Unmodified	_STSHDDFKF_					0	0	0		nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	MULTI-MSMS	A375_MHC_IP_R1	1	542.6399536132812	2	542.240721	1082.46689	-0.4805	-0.00026055	-0.46247	-0.00025077	-0.94297	-0.00051132	542.2403301407822	72.575	0.65905	72.575	72.271	72.93	0					29	12	3	0	0	0	0.6898	1	26386	26386		7.9102	7.9102	1	5004700			51732	3438	37588	37892	50530	50530					-0.07104601212813577
STSLDSLPNF	10	Unmodified	_STSLDSLPNF_					0	0	0		ENST00000392627.5_1_17:72427082-72427565:+|nuORF	ENST00000392627.5_1_17:72427082-72427565:+|nuORF	ENST00000392627.5_1_17:72427082-72427565:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	542.6951293945312	2	540.764029	1079.5135	-0.43345	-0.00023439	0.76553	0.00041397	0.33209	0.00017958	540.7638666598448	45.747	1.3159	45.747	44.98	46.295	0					82	25	5	0	0	0	0.6806	1	15997	15997		14.838	0.93222	1	39975000			51733	11423	37589	37893	50531	50531					-0.023071613815318415
STSLIVQFLDD	11	Unmodified	_STSLIVQFLDD_					0	0	0			REV__ENST00000478171.1_1_3:48450818-48451478:-|nuORF	REV__ENST00000478171.1_1_3:48450818-48451478:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	412.97491455078125	3	413.215204	1236.62378	0.1552	6.4129E-05	0.58201	0.0002405	0.73721	0.00030463	413.55101859581	19.648	0.30609	19.648	19.521	19.827	0					5	3	2	0	0	0	0.99252	1	4883	4883		5.5233	0	1	651460	+		51734	20441	37590	37894	50532	50532					0.014936388868591166
STSNSNNN	8	Unmodified	_STSNSNNN_					0	0	0		nc|ENSG00000115355|Q3V6T2-5|CCDC88A;nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;ENSG00000115355|ENST00000436346|CCDC88A	nc|ENSG00000115355|Q3V6T2-5|CCDC88A	nc|ENSG00000115355|Q3V6T2-5|CCDC88A	MSMS	A375_MHC_IP_R2	2	419.1824951171875	2	419.170296	836.326038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.82	1	147.84	147.34	148.34	0.018707								0	0	0	0.16876	1	57448	57448		0	0	1				51735	3302	37591	37895	50533	50533					-0.0986717986623944
STSPSILTAF	10	Unmodified	_STSPSILTAF_					0	0	0		ENSG00000185477|ENST00000609438|GPRIN3	ENSG00000185477|ENST00000609438|GPRIN3	ENSG00000185477|ENST00000609438|GPRIN3	MULTI-SECPEP	A375_MHC_IP_R1	1	512.6714477539062	2	512.27149	1022.52843	-0.38149	-0.00019542	-0.016268	-8.3337E-06	-0.39775	-0.00020376	512.2714543936384	72.753	0.55752	72.753	72.423	72.98	0					15	10	2	0	0	0	0.52461	1	26502	26502		36.127	4.8587	1	3218500			51736	8668	37592	37896	50534	50534					0.01806330486465413
STSPSLQHLLP	11	Unmodified	_STSPSLQHLLP_					0	0	0			REV__ENST00000514938.1_1_22:50943733-50944613:-|nuORF	REV__ENST00000514938.1_1_22:50943733-50944613:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	393.9122009277344	3	393.883789	1178.62954	-0.095018	-3.7426E-05	1.4089	0.00055493	1.3139	0.00051751	393.8844493170291	27.361	0.35639	28.04	27.843	28.2	0.67857					10	6	2	0	0	0	0.69231	1	9376	9376		9.2438	0.79947	1	2118400	+		51737	25654	37593	37897	50535	50535					0.04736782189183941
STSRLTLFS	9	Unmodified	_STSRLTLFS_					0	0	0		ENSG00000172869|ENST00000539542|DMXL1;nc|ENSG00000172869|Q9Y485|DMXL1;ENST00000512281.1_1_5:118470015-118483170:+|nuORF	ENSG00000172869|ENST00000539542|DMXL1	ENSG00000172869|ENST00000539542|DMXL1	MULTI-MSMS	A375_MHC_IP_R1	1	506.6866760253906	2	506.277106	1010.53966	-0.31175	-0.00015783	-0.57807	-0.00029267	-0.88982	-0.0004505	506.2768734305632	62.071	1.2292	62.071	61.737	62.966	0					54	23	3	0	0	0	0.27064	1	22460	22460		32.786	3.7041	1	47682000			51738	7739	37594	37898	50536	50536					0.03481152580627622
STSRQFVDGP	10	Unmodified	_STSRQFVDGP_					0	0	0		ENST00000548158.1_1_12:50393384-50398020:-|nuORF;ENSG00000161800|ENST00000312377|RACGAP1	ENST00000548158.1_1_12:50393384-50398020:-|nuORF	ENST00000548158.1_1_12:50393384-50398020:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	547.6668701171875	2	547.26727	1092.51999	-0.70857	-0.00038777	-0.021869	-1.1968E-05	-0.73043	-0.00039974	547.267412498297	28.917	0.60832	28.917	28.694	29.302	0					35	11	5	0	0	0	0.10503	1	8950	8950		62.573	16.552	1	23397000			51739	6486	37595	37899	50537	50537					-0.022572234301378558
STSRQFVDGP	10	Unmodified	_STSRQFVDGP_					0	0	0		ENST00000548158.1_1_12:50393384-50398020:-|nuORF;ENSG00000161800|ENST00000312377|RACGAP1	ENST00000548158.1_1_12:50393384-50398020:-|nuORF	ENST00000548158.1_1_12:50393384-50398020:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	547.6666870117188	2	547.26727	1092.51999	-1.1046	-0.00060449	0.047143	2.58E-05	-1.0574	-0.00057869	547.2672806124602	28.262	0.5079	28.941	28.655	29.163	0.67857					30	9	4	0	0	0	0.15514	1	9721	9721		53.833	15.859	1	22041000			51740	6486	37595	37899	50538	50538					-0.022572234301378558
STSSLILTSV	10	Unmodified	_STSSLILTSV_					0	0	0			REV__nc|ENSG00000105479|Q96M63-5|ODAD1	REV__nc|ENSG00000105479|Q96M63-5|ODAD1	MULTI-SECPEP	A375_MHC_IP_R2	2	503.681640625	2	504.284597	1006.55464	-0.94275	-0.00047542	-0.55021	-0.00027746	-1.493	-0.00075288	504.2843664805196	38.146	0.30956	38.921	38.687	38.997	0.77451					7	5	2	0	0	0	0.85226	1	14014	14014		6.2058	6.2058	1	2658700	+		51741	17387	37596	37900	50539	50539					0.051625996579559796
STSSYYYP	8	Unmodified	_STSSYYYP_					0	0	0			REV__ENST00000465084.1_1_2:113976112-113984685:-|nuORF	REV__ENST00000465084.1_1_2:113976112-113984685:-|nuORF	MSMS	A375_MHC_IP_R1	1	484.1742248535156	2	484.205815	966.397078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.045	1	52.045	51.545	52.545	0								0	0	0	0.16876	1	18494	18494		10.183	1.5901	1		+		51742	18351	37597	37901	50540	50540					-0.08746479881426694
STTLKKGP	8	Unmodified	_STTLKKGP_					0	0	0			REV__SNRK|p.K705Rfs*9|1|0.48|ENSG00000163788|chr3:43348373-43348383|AGTTTTTCTCT/-|frameshift_variant	REV__SNRK|p.K705Rfs*9|1|0.48|ENSG00000163788|chr3:43348373-43348383|AGTTTTTCTCT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	416.6500549316406	2	416.25036	830.486168	-0.085337	-3.5521E-05	-0.28406	-0.00011824	-0.3694	-0.00015376	416.2501775366523	44.583	0.457	45.352	45.086	45.543	0.76909					14	8	2	0	0	0	0.71451	1	16634	16634		30.225	0	1	3568200	+		51743	20411	37598	37902	50541	50541					0.06414399868754117
STTLTRSVF	9	Unmodified	_STTLTRSVF_					0	0	0			REV__nc|ENSG00000132470|P16144-4|ITGB4	REV__nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	A375_MHC_IP_R2	2	506.6764221191406	2	506.277106	1010.53966	-1.0398	-0.0005264	0.087925	4.4514E-05	-0.95183	-0.00048189	506.2770638091212	61.121	1.312	61.866	61.464	62.776	0.74504					82	25	5	0	0	0	0.60101	1	23359	23359		14.838	0	1	45828000	+		51744	18657	37599	37903	50542	50542					0.03481152580627622
STTTGHLIY	9	Unmodified	_STTTGHLIY_					0	0	0		EEF1A1|p.F424Cfs*3|1|0.17|ENSG00000156508|chr6:73517924-73517928|AGCAA/-|frameshift_variant;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	EEF1A1|p.F424Cfs*3|1|0.17|ENSG00000156508|chr6:73517924-73517928|AGCAA/-|frameshift_variant	EEF1A1|p.F424Cfs*3|1|0.17|ENSG00000156508|chr6:73517924-73517928|AGCAA/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	496.6635437011719	2	496.756007	991.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.105	1	40.88	40.38	41.38	0.77451								0	0	0	0.13141	1	14839	14839		32.305	10.559	1				51745	821	37600	37904	50543	50543					0.0013717717223471482
STVCSLDCEY	10	Unmodified	_STVCSLDCEY_					0	0	0		OTOGL|p.Q1836Sfs*45|1|0.64|ENSG00000165899|chr12:80353484-80353484|C/-|frameshift_variant;ENSG00000165899|ENST00000547103|OTOGL	OTOGL|p.Q1836Sfs*45|1|0.64|ENSG00000165899|chr12:80353484-80353484|C/-|frameshift_variant	OTOGL|p.Q1836Sfs*45|1|0.64|ENSG00000165899|chr12:80353484-80353484|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	560.7112426757812	2	560.220282	1118.42601	-0.44593	-0.00024982	-0.25599	-0.00014341	-0.70192	-0.00039323	560.2202964953592	44.038	0.91982	44.038	43.706	44.626	0					44	17	4	0	0	0	0.43117	1	15362	15362		32.305	3.8186	1	11327000			51746	7000	37601	37905	50544	50544					-0.12846446638945963
STVCSLDCEY	10	Unmodified	_STVCSLDCEY_					0	0	0		OTOGL|p.Q1836Sfs*45|1|0.64|ENSG00000165899|chr12:80353484-80353484|C/-|frameshift_variant;ENSG00000165899|ENST00000547103|OTOGL	OTOGL|p.Q1836Sfs*45|1|0.64|ENSG00000165899|chr12:80353484-80353484|C/-|frameshift_variant	OTOGL|p.Q1836Sfs*45|1|0.64|ENSG00000165899|chr12:80353484-80353484|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	560.7109375	2	560.220282	1118.42601	-0.49682	-0.00027833	-0.38583	-0.00021615	-0.88265	-0.00049448	560.2203054358423	43.358	0.85922	44.131	43.775	44.634	0.7724					42	16	4	0	0	0	0.45919	1	16125	16125		30.637	2.1497	1	11070000			51747	7000	37601	37905	50545	50545					-0.12846446638945963
STVEDLDLSY	10	Unmodified	_STVEDLDLSY_					0	0	0		ENSG00000128011|ENST00000248668|LRFN1	ENSG00000128011|ENST00000248668|LRFN1	ENSG00000128011|ENST00000248668|LRFN1	MULTI-MSMS	A375_MHC_IP_R1	1	572.1705932617188	2	571.266601	1140.51865	-0.28313	-0.00016174	-0.38888	-0.00022216	-0.67202	-0.0003839	571.2633486643198	31.424	1.3708	31.424	30.653	32.024	0					78	26	4	0	0	0	0.60556	1	10107	10107		20.454	3.5113	1	19956000			51748	4118	37602	37906	50546	50546					-0.045989023095671655
STVEYNITI	9	Unmodified	_STVEYNITI_					0	0	0		PCDHB11|p.A415V|2|0.32|ENSG00000197479|chr5:141201018-141201018|C/T|missense_variant	PCDHB11|p.A415V|2|0.32|ENSG00000197479|chr5:141201018-141201018|C/T|missense_variant	PCDHB11|p.A415V|2|0.32|ENSG00000197479|chr5:141201018-141201018|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	1039.3697509765625	1	1039.53062	1038.52334	0.214	0.00022246	-0.37835	-0.00039331	-0.16435	-0.00017085	1039.5301793136068	102.03	1.8764	102.03	101.65	103.52	0					95	36	5	0	0	0	0.16676	1	37886	37886		49.933	15.531	1	112630000			51749	15128	37603	37907	50547	50547					0.005620266238565819
STVEYNITI	9	Unmodified	_STVEYNITI_					0	0	0		PCDHB11|p.A415V|2|0.32|ENSG00000197479|chr5:141201018-141201018|C/T|missense_variant	PCDHB11|p.A415V|2|0.32|ENSG00000197479|chr5:141201018-141201018|C/T|missense_variant	PCDHB11|p.A415V|2|0.32|ENSG00000197479|chr5:141201018-141201018|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	1038.8760986328125	1	1039.53062	1038.52334	0.14402	0.00014971	-0.30734	-0.00031949	-0.16332	-0.00016978	1039.5302281102133	101.37	1.9325	102.13	101.7	103.63	0.76428					97	37	5	0	0	0	0.064992	1	38678	38678		78.149	10.069	1	100380000			51750	15128	37603	37907	50548	50548					0.005620266238565819
STVGLAQQW	9	Unmodified	_STVGLAQQW_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	A375_MHC_IP_R1	1	495.65582275390625	2	495.256174	988.497795	-0.25657	-0.00012707	-0.28228	-0.0001398	-0.53885	-0.00026687	495.2559609904952	78.196	0.55942	78.196	77.895	78.454	0					17	10	2	0	0	0	0.064406	2	28544	28544;28570		58.679	30.192	1	2341500			51751	9183	37604	37908	50549;50550	50549					0.0030859689209137287
STVGLAQQW	9	Unmodified	_STVGLAQQW_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	A375_MHC_IP_R2	2	495.6556396484375	2	495.256174	988.497795	-0.48217	-0.0002388	-0.23467	-0.00011622	-0.71683	-0.00035502	495.2559759329614	77.466	0.76246	78.209	77.757	78.52	0.74293					22	14	3	0	0	0	0.13797	2	29439	29378;29439		43.858	22.112	1	2126400			51752	9183	37604	37908	50551;50552	50552					0.0030859689209137287
STVILPASYN	10	Unmodified	_STVILPASYN_					0	0	0			REV__ENSG00000121904|ENST00000373381|CSMD2	REV__ENSG00000121904|ENST00000373381|CSMD2	MULTI-MSMS	A375_MHC_IP_R2	2	355.4599304199219	3	355.525602	1063.55498	-0.29681	-0.00010552	0.010345	3.6777E-06	-0.28647	-0.00010185	355.5255968306858	40.384	1.0156	41.158	40.879	41.895	0.77451					52	19	3	0	0	0	0.72358	1	14851	14851		1.7423	0.96574	1	185750000	+		51753	18178	37605	37909	50553	50553					0.025740193777892273
STVMKKKW	8	Unmodified	_STVMKKKW_					0	0	0			REV__CNTN5|p.E823K|5|0.35|ENSG00000149972|chr11:100299243-100299243|G/A|missense_variant	REV__CNTN5|p.E823K|5|0.35|ENSG00000149972|chr11:100299243-100299243|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	503.6170959472656	2	504.288963	1006.56337	-0.70556	-0.00035581	-0.69	-0.00034796	-1.3956	-0.00070377	504.7899223452862	27.849	0.45522	28.528	28.251	28.706	0.67857					13	8	2	0	0	0	0.972	1	9556	9556		4.756	4.756	1	8032400	+		51754	15816	37606	37910	50554	50554					0.0603529481344367
STVNRAAVQW	10	Unmodified	_STVNRAAVQW_					0	0	0		ENST00000488801.5_1_2:86333370-86339044:+|nuORF	ENST00000488801.5_1_2:86333370-86339044:+|nuORF	ENST00000488801.5_1_2:86333370-86339044:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	566.6983642578125	2	566.298904	1130.58326	-0.48689	-0.00027573	-0.20613	-0.00011673	-0.69302	-0.00039246	566.2986637639502	45.177	0.60902	45.942	45.694	46.303	0.76519					29	11	3	0	0	0	0.27978	1	16859	16859		36.506	0	1	8150100			51755	12623	37607	37911	50555	50555					0.023187620777662232
STVPKLPAVH	10	Unmodified	_STVPKLPAVH_					0	0	0		ENSG00000148840|ENST00000278070|PPRC1;nc|ENSG00000148840|Q5VV67-2|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	MULTI-SECPEP	A375_MHC_IP_R1	1	524.1246337890625	2	524.811116	1047.60768	-0.76122	-0.0003995	-0.023347	-1.2253E-05	-0.78457	-0.00041175	524.8110782881677	38.058	0.30597	38.058	37.862	38.168	0					6	5	2	0	0	0	0.92389	1	12883	12883		7.2892	0.56607	1	708110			51756	5768	37608	37912	50556	50556					0.08578022231267823
STVPLDRK	8	Unmodified	_STVPLDRK_					0	0	0			REV__ENSG00000224470|ENST00000427980|ATXN1L	REV__ENSG00000224470|ENST00000427980|ATXN1L	MULTI-SECPEP	A375_MHC_IP_R1	1	457.98687744140625	2	458.266542	914.51853	-0.11619	-5.3247E-05	0.17612	8.0709E-05	0.059925	2.7461E-05	458.2666250495165	38.645	0.50935	38.645	38.423	38.933	0					20	9	3	0	0	0	0.8824	1	13172	13172		16.942	0	1	6817000	+		51757	22710	37609	37913	50557	50557					0.05785187271760606
STVPQRVTL	9	Unmodified	_STVPQRVTL_					0	0	0		ENSG00000164588|ENST00000303230|HCN1	ENSG00000164588|ENST00000303230|HCN1	ENSG00000164588|ENST00000303230|HCN1	MULTI-SECPEP	A375_MHC_IP_R2	2	500.67034912109375	2	500.792924	999.571294	-0.55551	-0.00027819	-0.84323	-0.00042229	-1.3987	-0.00070048	500.7928597803313	48.337	0.70747	49.094	48.829	49.536	0.75737					16	13	2	0	0	0	0.46045	1	18171	18171		29.082	0	1	1824500			51758	6851	37610	37914	50558	50558					0.07149145334562945
STVSAWSFTR	10	Unmodified	_STVSAWSFTR_					0	0	0			REV__ENSG00000145907|ENST00000356245|G3BP1	REV__ENSG00000145907|ENST00000356245|G3BP1	MULTI-SECPEP	A375_MHC_IP_R2	2	381.2646179199219	3	381.192734	1140.55637	-0.18363	-7E-05	0.72399	0.00027598	0.54035	0.00020598	381.19274744392504	26.986	0.46055	27.646	27.313	27.773	0.65992					9	8	2	0	0	0	0.91909	1	9043	9043		3.0723	0	1	1412900	+		51759	19502	37611	37915	50559	50559					-0.008283465334443463
STVSLAWPKP	10	Unmodified	_STVSLAWPKP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R1	1	543.7316284179688	2	543.303124	1084.5917	-0.10273	-5.5816E-05	1.265	0.0006873	1.1623	0.00063148	543.8053606718662	44.954	1.0113	44.954	44.523	45.534	0					31	19	2	0	0	0	0.70496	1	15747	15747		10.074	0.6908	1	2051300			51760	6151;14694	37612	37916	50560	50560					0.05278315994382865
STWESPVGP	9	Unmodified	_STWESPVGP_					0	0	0			REV__ENSG00000174373|ENST00000680220|RALGAPA1;REV__ENST00000443361.1_1_9:108285096-108287232:+|nuORF	REV__ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-SECPEP	A375_MHC_IP_R1	1	480.4720153808594	2	480.227082	958.439611	-0.43922	-0.00021093	0.78931	0.00037905	0.35008	0.00016812	480.22735771929337	34.642	0.25232	34.642	34.507	34.759	0					7	4	2	0	0	0	0.74651	1	11437	11437		4.756	0	1	1119400	+		51761	21281;24826	37613	37917	50561	50561					-0.04127084753190502
STWESPVGP	9	Unmodified	_STWESPVGP_					0	0	0			REV__ENSG00000174373|ENST00000680220|RALGAPA1;REV__ENST00000443361.1_1_9:108285096-108287232:+|nuORF	REV__ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-SECPEP	A375_MHC_IP_R2	2	480.1094665527344	2	480.227082	958.439611	-1.0509	-0.00050469	1.0054	0.00048284	-0.045498	-2.1849E-05	480.22760706765524	33.924	0.25307	34.677	34.5	34.753	0.75225					7	4	2	0	0	0	0.74651	1	12120	12120		4.756	0	1	1200500	+		51762	21281;24826	37613	37917	50562	50562					-0.04127084753190502
STWHDPRVP	9	Unmodified	_STWHDPRVP_					0	0	0		ENSG00000108854|ENST00000262435|SMURF2;ENST00000582081.5_1_17:62541968-62590137:-|nuORF	ENSG00000108854|ENST00000262435|SMURF2	ENSG00000108854|ENST00000262435|SMURF2	MULTI-SECPEP	A375_MHC_IP_R2	2	365.91729736328125	3	365.51744	1093.53049	0.040655	1.486E-05	0.2138	7.8149E-05	0.25446	9.3009E-05	365.5174431546455	32.095	0.7096	32.832	32.453	33.162	0.73692					34	13	4	0	0	0	0.71541	1	11339	11339		7.609	7.609	1	11473000			51763	2846	37614	37918	50563	50563					-0.012531959850548446
STWHVARTF	9	Unmodified	_STWHVARTF_					0	0	0		ENST00000528098.5_1_11:57182763-57193651:-|nuORF;ENSG00000134802|ENST00000395124|SLC43A3;nc|ENSG00000134802|Q8NBI5-2|SLC43A3	ENST00000528098.5_1_11:57182763-57193651:-|nuORF	ENST00000528098.5_1_11:57182763-57193651:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	369.2576599121094	3	368.857686	1103.55123	0.39574	0.00014597	0.13036	4.8083E-05	0.5261	0.00019406	368.8575905855943	42.361	0.45477	42.361	42.132	42.587	0					27	8	4	0	0	0	0.50484	1	14663	14663		21.799	13.854	1	8792500			51764	4610	37615	37919	50564	50564					0.0035939439460435096
STWHVARTF	9	Unmodified	_STWHVARTF_					0	0	0		ENST00000528098.5_1_11:57182763-57193651:-|nuORF;ENSG00000134802|ENST00000395124|SLC43A3;nc|ENSG00000134802|Q8NBI5-2|SLC43A3	ENST00000528098.5_1_11:57182763-57193651:-|nuORF	ENST00000528098.5_1_11:57182763-57193651:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	369.2577209472656	3	368.857686	1103.55123	0.11879	4.3816E-05	0.34244	0.00012631	0.46122	0.00017013	368.85767564828757	41.493	0.50737	42.268	41.997	42.504	0.77451					27	9	4	0	0	0	0.4465	1	15386	15386		23.801	21.303	1	8222000			51765	4610	37615	37919	50565	50565					0.0035939439460435096
STWHVARTF	9	Unmodified	_STWHVARTF_					0	0	0		ENST00000528098.5_1_11:57182763-57193651:-|nuORF;ENSG00000134802|ENST00000395124|SLC43A3;nc|ENSG00000134802|Q8NBI5-2|SLC43A3	ENST00000528098.5_1_11:57182763-57193651:-|nuORF	ENST00000528098.5_1_11:57182763-57193651:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	553.1834106445312	2	552.78289	1103.55123	-0.92487	-0.00051125	1.3682	0.00075635	0.44338	0.00024509	552.7838647698542	41.5	0.3535	42.274	41.997	42.35	0.77451					10	6	2	0	0	0	0.30133	1	15390	15390		37.075	17.818	1	3107400			51766	4610	37615	37919	50566	50566					0.0035939439460435096
STWMHLQCF	9	Unmodified	_STWMHLQCF_					0	0	0		ENSG00000112406|ENST00000367658|HECA	ENSG00000112406|ENST00000367658|HECA	ENSG00000112406|ENST00000367658|HECA	MULTI-SECPEP	A375_MHC_IP_R1	1	385.6089172363281	3	384.837017	1151.48922	-0.18723	-7.2051E-05	-0.52699	-0.00020281	-0.71422	-0.00027486	384.8368199102072	29.251	0.30552	29.251	29.047	29.353	0					7	5	2	0	0	0	0.78798	1	9169	9169		2.2828	1.3205	1	2151000			51767	3084	37616	37920	50567	50567					-0.08046416340380347
STWRQKKKPK	10	Unmodified	_STWRQKKKPK_					0	0	0			REV__MME|p.P26S|1|0.53|ENSG00000196549|chr3:155084243-155084243|C/T|missense_variant	REV__MME|p.P26S|1|0.53|ENSG00000196549|chr3:155084243-155084243|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	644.287109375	2	643.888221	1285.76189	-0.82873	-0.00053361	-0.6595	-0.00042465	-1.4882	-0.00095825	643.8876030364634	143.01	1.2099	143.01	142.18	143.39	0					65	23	5	0	0	0	0.94862	1	54929	54929		1.6526	0	1	13252000	+		51768	27022	37617	37921	50568	50568					0.1304385171663398
STYAGIRKV	9	Unmodified	_STYAGIRKV_					0	0	0		ROBO1|p.N1089Sfs*2|1|0.06|ENSG00000169855|chr3:78635881-78635882|-/ATGA|frameshift_variant;ROBO1|p.N1088Sfs*50|1|0.03|ENSG00000169855|chr3:78635883-78635884|-/AGTGGCAGTGTATTGTGAAAGC|frameshift_variant;nc|ENSG00000169855|Q9Y6N7-6|ROBO1;nc|ENSG00000169855|Q9Y6N7-5|ROBO1;nc|ENSG00000169855|Q9Y6N7-4|ROBO1;nc|ENSG00000169855|Q9Y6N7-3|ROBO1;ENSG00000169855|ENST00000464233|ROBO1;nc|ENSG00000169855|Q9Y6N7-2|ROBO1	ROBO1|p.N1089Sfs*2|1|0.06|ENSG00000169855|chr3:78635881-78635882|-/ATGA|frameshift_variant	ROBO1|p.N1089Sfs*2|1|0.06|ENSG00000169855|chr3:78635881-78635882|-/ATGA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	497.1556396484375	2	497.787641	993.56073	-0.3698	-0.00018408	-0.46189	-0.00022992	-0.83169	-0.000414	497.787426271359	23.19	0.25248	23.19	22.974	23.227	0					6	4	2	0	0	0	0.65527	1	6282	6282		17.113	13.168	1	3143000			51769	7442	37618	37922	50569	50569					0.06369162680141471
STYDGFGLAW	10	Unmodified	_STYDGFGLAW_					0	0	0		ENSG00000095002|ENST00000233146|MSH2;nc|ENSG00000095002|P43246-2|MSH2	ENSG00000095002|ENST00000233146|MSH2	ENSG00000095002|ENST00000233146|MSH2	MULTI-MSMS	A375_MHC_IP_R1	1	559.2244873046875	2	558.753464	1115.49238	-0.33242	-0.00018574	-2.3182	-0.0012953	-2.6506	-0.001481	558.7524908886772	106.5	0.61516	106.5	106.16	106.78	0					18	11	2	0	0	0	0.40101	1	39080	39080		34.102	3.4659	1	2484100			51770	2032	37619	37923	50570	50570					-0.0607512669037078
STYDGFGLAW	10	Unmodified	_STYDGFGLAW_					0	0	0		ENSG00000095002|ENST00000233146|MSH2;nc|ENSG00000095002|P43246-2|MSH2	ENSG00000095002|ENST00000233146|MSH2	ENSG00000095002|ENST00000233146|MSH2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	558.753464	1115.49238	-0.69864	-0.00039037	-1.9783	-0.0011054	-2.6769	-0.0014957	558.7521329606968	105.65	0.50914	106.41	106.17	106.68	0.75977	-0.045237	6.6651E-05	NaN	34.102	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1361000			51771	2032	37619	37923							-0.0607512669037078
STYIHTMNV	9	Unmodified	_STYIHTMNV_					0	0	0		CPXCR1|p.L257S|1|0.62|ENSG00000147183|chrX:88754184-88754184|T/C|missense_variant	CPXCR1|p.L257S|1|0.62|ENSG00000147183|chrX:88754184-88754184|T/C|missense_variant	CPXCR1|p.L257S|1|0.62|ENSG00000147183|chrX:88754184-88754184|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	533.4251708984375	2	533.255317	1064.49608	-0.76106	-0.00040584	-0.5492	-0.00029286	-1.3103	-0.0006987	533.2555070667815	45.512	0.45471	46.278	46.048	46.503	0.76519					14	8	2	0	0	0	0.69504	1	16946	16946		12.532	0	1	1341200			51772	655	37620	37924	50571	50571					-0.03358780188182209
STYIKKIVH	9	Unmodified	_STYIKKIVH_					0	0	0		ENST00000547505.2_1_12:44053979-44054081:+|nuORF	ENST00000547505.2_1_12:44053979-44054081:+|nuORF	ENST00000547505.2_1_12:44053979-44054081:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	544.132080078125	2	544.826766	1087.63898	-0.52367	-0.00028531	1.0046	0.00054735	0.48096	0.00026204	544.8270345152788	53.479	0.50858	53.479	53.301	53.809	0					14	9	2	0	0	0	0.75466	1	19011	19011		12.532	1.7076	1	2436000			51773	13344	37621	37925	50572	50572					0.09866595265384603
STYKSLTNSW	10	Unmodified	_STYKSLTNSW_					0	0	0		HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|339|2|anti-sense	HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|339|2|anti-sense	HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|339|2|anti-sense	MULTI-SECPEP	A375_MHC_IP_R1	1	594.1901245117188	2	593.790578	1185.5666	-0.58558	-0.00034771	-0.087542	-5.1981E-05	-0.67312	-0.00039969	593.7905485191039	27.957	0.50261	27.957	27.786	28.288	0					23	9	3	0	0	0	0.63289	1	8563	8563		47.749	47.749	1	18152000			51774	14115	37622	37926	50573	50573					-0.01875783598848102
STYMETYVYFY	11	Unmodified	_STYMETYVYFY_					0	0	0		ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	MULTI-MSMS	A375_MHC_IP_R1	1	489.9442138671875	3	489.544333	1465.61117	-0.22341	-0.00010937	0.090559	4.4332E-05	-0.13285	-6.5037E-05	489.54441292626666	46.076	1.569	46.076	45.434	47.003	0					61	30	3	0	0	0	0.73332	1	16163	16163		2.6312	1.4164	1	2224700			51775	1025	37623	37927	50574	50574					-0.10301140567662515
STYPRPHEY	9	Unmodified	_STYPRPHEY_					0	0	0		ENST00000472025.1_1_20:57581320-57582150:-|nuORF;ENSG00000101160|ENST00000217131|CTSZ	ENST00000472025.1_1_20:57581320-57582150:-|nuORF	ENST00000472025.1_1_20:57581320-57582150:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	383.2938232421875	3	383.848967	1148.52507	0.51128	0.00019626	0.80636	0.00030952	1.3176	0.00050578	383.8491284584645	21.334	1.2212	21.334	20.435	21.656	0					35	23	2	0	0	0	0.74169	1	5431	5431		7.609	0	1	1447400			51776	2258	37624	37928	50575	50575					-0.0432491956753438
STYPRPHEY	9	Unmodified	_STYPRPHEY_					0	0	0		ENST00000472025.1_1_20:57581320-57582150:-|nuORF;ENSG00000101160|ENST00000217131|CTSZ	ENST00000472025.1_1_20:57581320-57582150:-|nuORF	ENST00000472025.1_1_20:57581320-57582150:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	383.27215576171875	3	383.848967	1148.52507	-0.40833	-0.00015674	0.61378	0.0002356	0.20544	7.8859E-05	383.84919924084136	19.663	1.2127	20.273	19.591	20.803	0.61029					41	23	2	0	0	0	0.74169	1	6043	6043		11.495	6.5977	1	2135200			51777	2258	37624	37928	50576	50576					-0.0432491956753438
SVAARMLKVA	10	Unmodified	_SVAARMLKVA_					0	0	0		ENST00000591718.1_1_19:55966993-55972941:-|nuORF;ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2	ENST00000591718.1_1_19:55966993-55972941:-|nuORF	ENST00000591718.1_1_19:55966993-55972941:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	523.7130126953125	2	523.312969	1044.61138	-0.73455	-0.0003844	1.2198	0.00063835	0.48527	0.00025395	523.31360637041	35.715	0.55914	36.478	36.283	36.842	0.76338					22	10	3	0	0	0	0.85226	1	12966	12966		10.074	0	1	5596200			51778	1338	37625	37929	50577	50577					0.09086368733505878
SVAARMLKVA	10	Unmodified	_SVAARMLKVA_					0	0	0		ENST00000591718.1_1_19:55966993-55972941:-|nuORF;ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2	ENST00000591718.1_1_19:55966993-55972941:-|nuORF	ENST00000591718.1_1_19:55966993-55972941:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	523.312969	1044.61138	-0.75227	-0.00039367	1.7098	0.00089477	0.95755	0.0005011	523.3137602692101	36.481	0.50768	36.481	36.287	36.795	0	0.0012269	0.00010989	NaN	10.074	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4388100			51779	1338	37625	37929							0.09086368733505878
SVADTVARV	9	Unmodified	_SVADTVARV_					0	0	0		ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	A375_MHC_IP_R1	1	459.65618896484375	2	459.256174	916.497795	-0.40895	-0.00018781	0.18857	8.6601E-05	-0.22039	-0.00010121	459.2563594525957	39.955	0.40722	39.955	39.744	40.151	0					15	7	3	0	0	0	0.27064	1	13718	13718		32.786	8.7651	1	3624300			51780	5568	37626	37930	50578	50578					0.03620596892085359
SVADTVARV	9	Unmodified	_SVADTVARV_					0	0	0		ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	A375_MHC_IP_R2	2	459.6559753417969	2	459.256174	916.497795	-0.53159	-0.00024413	0.073742	3.3867E-05	-0.45785	-0.00021027	459.25612494967993	39.181	0.35798	39.956	39.76	40.118	0.77451					14	6	3	0	0	0	0.19747	1	14469	14469		38.176	12.776	1	3277700			51781	5568	37626	37930	50579	50579					0.03620596892085359
SVAERQRWL	9	Unmodified	_SVAERQRWL_					0	0	0		nc|ENSG00000106086|Q96JA3-3|PLEKHA8;nc|ENSG00000106086|Q96JA3-2|PLEKHA8;ENSG00000106086|ENST00000449726|PLEKHA8;ENST00000498106.1_1_7:30085848-30088836:+|nuORF	nc|ENSG00000106086|Q96JA3-3|PLEKHA8	nc|ENSG00000106086|Q96JA3-3|PLEKHA8	MULTI-MSMS	A375_MHC_IP_R2	2	382.6121826171875	3	382.21224	1143.61489	-0.022216	-8.4913E-06	0.45563	0.00017415	0.43342	0.00016566	382.2123070749987	42.318	0.40868	43.09	42.86	43.268	0.7724					11	7	2	0	0	0	0.67787	1	15769	15769		8.9762	8.9762	1	2213300			51782	2667	37627	37931	50580	50580					0.048827548317149194
SVAERQRWL	9	Unmodified	_SVAERQRWL_					0	0	0		nc|ENSG00000106086|Q96JA3-3|PLEKHA8;nc|ENSG00000106086|Q96JA3-2|PLEKHA8;ENSG00000106086|ENST00000449726|PLEKHA8;ENST00000498106.1_1_7:30085848-30088836:+|nuORF	nc|ENSG00000106086|Q96JA3-3|PLEKHA8	nc|ENSG00000106086|Q96JA3-3|PLEKHA8	MULTI-MATCH	A375_MHC_IP_R1	1		3	382.21224	1143.61489	0.51846	0.00019816	0.11408	4.3602E-05	0.63254	0.00024176	382.2122041566543	43.236	0.35713	43.236	43.043	43.4	0	0.072694	-0.00020755	NaN	8.9762	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1452100			51783	2667	37627	37931							0.048827548317149194
SVAEVTREGSS	11	Unmodified	_SVAEVTREGSS_					0	0	0			REV__ENST00000460829.5_1_3:184046592-184046874:+|nuORF	REV__ENST00000460829.5_1_3:184046592-184046874:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	560.7105712890625	2	561.275292	1120.53603	-0.65191	-0.0003659	-0.52009	-0.00029191	-1.172	-0.00065781	561.2747679240109	52.918	0.60725	52.918	52.643	53.25	0					17	11	2	0	0	0	0.63737	1	18772	18772		20.415	5.1661	1	2765100	+		51784	24968	37628	37932	50581	50581					-0.01941561983903739
SVAGKIHTV	9	Unmodified	_SVAGKIHTV_					0	0	0		nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;ENSG00000243244|ENST00000404752|STON1	nc|ENSG00000243244|Q9Y6Q2-3|STON1	nc|ENSG00000243244|Q9Y6Q2-3|STON1	MULTI-MSMS	A375_MHC_IP_R1	1	456.66900634765625	2	456.269084	910.523616	-0.019543	-8.917E-06	-0.071836	-3.2777E-05	-0.09138	-4.1694E-05	456.26893659391993	21.326	0.50739	21.326	21.048	21.555	0					22	9	3	0	0	0	0.0096967	1	5559	5559		110.79	37.825	1	4288300			51785	1465	37629	37933	50582	50582					0.06477491134364755
SVAGNLVSV	9	Unmodified	_SVAGNLVSV_					0	0	0			REV__PCOLCE|p.F221L|1|0.57|ENSG00000106333|chr7:100605748-100605748|T/C|missense_variant	REV__PCOLCE|p.F221L|1|0.57|ENSG00000106333|chr7:100605748-100605748|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	423.6400451660156	2	423.239993	844.465432	-0.15057	-6.3727E-05	0.15955	6.7526E-05	0.0089768	3.7993E-06	423.240038346997	77.711	0.51038	78.454	78.113	78.624	0.74293					22	9	3	0	0	0	0.02559	1	29454	29454		78.728	7.5945	1	6949400	+		51786	27745	37630	37934	50583	50583					0.03697809489096926
SVAGNLVSV	9	Unmodified	_SVAGNLVSV_					0	0	0			REV__PCOLCE|p.F221L|1|0.57|ENSG00000106333|chr7:100605748-100605748|T/C|missense_variant	REV__PCOLCE|p.F221L|1|0.57|ENSG00000106333|chr7:100605748-100605748|T/C|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	423.239993	844.465432	-0.15057	-6.3727E-05	0.15955	6.7526E-05	0.0089768	3.7993E-06	423.240038346997	77.711	0.51038	78.454	78.113	78.624	0.74293	-0.038342	4.6713E-05	NaN	78.728	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6949400	+		51787	27745	37630	37934							0.03697809489096926
SVAKLKLQRS	10	Unmodified	_SVAKLKLQRS_					0	0	0		IGSF9|p.G808R|1|0.6|ENSG00000085552|chr1:159928966-159928966|C/T|missense_variant	IGSF9|p.G808R|1|0.6|ENSG00000085552|chr1:159928966-159928966|C/T|missense_variant	IGSF9|p.G808R|1|0.6|ENSG00000085552|chr1:159928966-159928966|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	565.21630859375	2	565.356222	1128.69789	-0.22697	-0.00012832	-3.3185	-0.0018761	-3.5455	-0.0020045	565.3549164027598	43.253	0.25593	43.253	43.095	43.351	0					6	4	2	0	0	0	0.94598	1	14995	14995		0.30703	0.03801	1	609690			51788	14148	37631	37935	50584	50584					0.13869071559702206
SVAKSLDP	8	Unmodified	_SVAKSLDP_					0	0	0			REV__NR3C1|p.E94Nfs*7|1|0.08|ENSG00000113580|chr5:143400559-143400560|TC/-|frameshift_variant	REV__NR3C1|p.E94Nfs*7|1|0.08|ENSG00000113580|chr5:143400559-143400560|TC/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	408.6153564453125	2	408.726718	815.438883	-0.18451	-7.5416E-05	2.1302	0.00087067	1.9457	0.00079525	408.7277774077153	34.714	0.55489	35.477	35.324	35.878	0.76338					15	10	2	0	0	0	0.91495	1	12694	12694		12.532	1.7076	1	1276500	+		51789	17789	37632	37936	50585	50585					0.023781205977684294
SVALGEEVRRS	11	Unmodified	_SVALGEEVRRS_					0	0	0		ENSG00000132622|ENST00000254963|HSPA12B	ENSG00000132622|ENST00000254963|HSPA12B	ENSG00000132622|ENST00000254963|HSPA12B	MSMS	A375_MHC_IP_R2	2	401.61163330078125	3	401.554443	1201.6415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.626	1	37.397	36.897	37.897	0.7709								0	0	0	0.14837	1	13364	13364		12.856	5.0099	1				51790	4428	37633	37937	50586	50586					0.04874398932383883
SVAPSVLH	8	Unmodified	_SVAPSVLH_					0	0	0			REV__ENSG00000010072|ENST00000295050|SPRTN	REV__ENSG00000010072|ENST00000295050|SPRTN	MULTI-MSMS	A375_MHC_IP_R2	2	405.62957763671875	2	405.229428	808.444303	-0.54721	-0.00022175	0.49611	0.00020104	-0.051106	-2.071E-05	405.2295669774461	53.46	0.66401	54.211	53.893	54.557	0.75105					18	12	2	0	0	0	0.5503	1	20153	20153		46.921	0	1	4894300	+		51791	16189	37634	37938	50587	50587					0.03241844180240605
SVATKLTAV	9	Unmodified	_SVATKLTAV_					0	0	0		nc|ENSG00000038358|Q6P2E9-2|EDC4;ENSG00000038358|ENST00000358933|EDC4	nc|ENSG00000038358|Q6P2E9-2|EDC4	nc|ENSG00000038358|Q6P2E9-2|EDC4	MULTI-SECPEP	A375_MHC_IP_R1	1	445.671142578125	2	445.271293	888.528032	-0.024915	-1.1094E-05	-0.11396	-5.0744E-05	-0.13888	-6.1838E-05	445.2711690404002	40.787	0.40416	40.787	40.559	40.963	0					12	7	2	0	0	0	0.61452	1	14040	14040		20.415	0	1	4925300			51792	1152	37635	37939	50588	50588					0.0793095555727632
SVAVTALFL	9	Unmodified	_SVAVTALFL_					0	0	0		ENST00000381801.5_1_13:25861436-25861823:-|nuORF	ENST00000381801.5_1_13:25861436-25861823:-|nuORF	ENST00000381801.5_1_13:25861436-25861823:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	920.0576782226562	1	920.545145	919.537869	-0.34823	-0.00032056	0.55287	0.00050894	0.20464	0.00018838	920.5459193084275	129.98	0.40359	130.19	130	130.4	0.2142					11	7	2	0	0	0	0.62767	1	51162	51162		16.942	0	1	7793300			51793	11379	37636	37940	50589	50589					0.07488143562670757
SVCCGDSSCC	10	Unmodified	_SVCCGDSSCC_					0	0	0		ENSG00000188155|ENST00000400368|KRTAP10-6	ENSG00000188155|ENST00000400368|KRTAP10-6	ENSG00000188155|ENST00000400368|KRTAP10-6	MSMS	A375_MHC_IP_R1	1	482.13653564453125	2	482.137381	962.260208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.018	1	88.018	87.518	88.518	0								0	0	0	0.15531	1	32305	32305		3.5965	0.70727	1				51794	8887	37637	37941	50590	50590					-0.22243119690949698
SVCCGDSSCC	10	Unmodified	_SVCCGDSSCC_					0	0	0		ENSG00000188155|ENST00000400368|KRTAP10-6	ENSG00000188155|ENST00000400368|KRTAP10-6	ENSG00000188155|ENST00000400368|KRTAP10-6	MSMS	A375_MHC_IP_R2	2	482.16278076171875	2	482.137381	962.260208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.338	1	88.071	87.571	88.571	0.733								0	0	0	0.15531	1	33214	33214		3.5965	0.70727	1				51795	8887	37637	37941	50591	50591					-0.22243119690949698
SVCCGDSSCC	10	Unmodified	_SVCCGDSSCC_					0	0	0		ENSG00000188155|ENST00000400368|KRTAP10-6	ENSG00000188155|ENST00000400368|KRTAP10-6	ENSG00000188155|ENST00000400368|KRTAP10-6	MSMS	A375_MHC_IP_R2	2	482.1352233886719	2	482.137381	962.260208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.413	1	88.145	87.645	88.645	0.7318								0	0	0	0.15531	1	33244	33244		3.5965	0.70727	1				51796	8887	37637	37941	50592	50592					-0.22243119690949698
SVCTRSALSN	10	Unmodified	_SVCTRSALSN_					0	0	0			REV__ENST00000445059.3_1_10:69770394-69770541:-|nuORF	REV__ENST00000445059.3_1_10:69770394-69770541:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	520.2261352539062	2	519.255848	1036.49714	-0.37411	-0.00019426	0.8135	0.00042241	0.43939	0.00022816	519.2561188378052	51.904	0.76308	51.904	51.373	52.136	0					31	14	3	0	0	0	0.71266	1	18392	18392		6.6304	0.42459	1	7591700	+		51797	24838	37638	37942	50593	50593					-0.019645658192757764
SVDDTIVAL	9	Unmodified	_SVDDTIVAL_					0	0	0		nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-3|NUP98	nc|ENSG00000110713|P52948-2|NUP98	nc|ENSG00000110713|P52948-2|NUP98	MULTI-MSMS	A375_MHC_IP_R1	1	932.8924560546875	1	932.493504	931.486227	-0.012573	-1.1724E-05	-0.60171	-0.00056109	-0.61428	-0.00057281	932.4937912010612	98.633	0.46092	98.633	98.403	98.864	0					12	8	2	0	0	0	0.03063	1	36236	36236		74.423	14.033	1	2685400			51798	2942	37639	37943	50594	50594					0.01774355078100598
SVDDTIVAL	9	Unmodified	_SVDDTIVAL_					0	0	0		nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-3|NUP98	nc|ENSG00000110713|P52948-2|NUP98	nc|ENSG00000110713|P52948-2|NUP98	MULTI-MATCH	A375_MHC_IP_R2	2		1	932.493504	931.486227	-0.33831	-0.00031547	-0.066947	-6.2428E-05	-0.40526	-0.0003779	932.4938835380627	97.768	0.45909	98.524	98.381	98.84	0.75586	-0.05429	0.00014333	NaN	74.423	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2006900			51799	2942	37639	37943							0.01774355078100598
SVDFSFDYR	9	Unmodified	_SVDFSFDYR_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	A375_MHC_IP_R2	2	568.6555786132812	2	568.256371	1134.49819	-0.2487	-0.00014133	0.19925	0.00011322	-0.049451	-2.8101E-05	568.2555774546495	68.765	1.573	69.5	69.121	70.694	0.73511					60	30	4	0	0	0	0.61998	1	26021	26021		13.906	1.6654	1	17418000			51800	6152	37640	37944	50595	50595					-0.06368028178712848
SVDGHMKLY	9	Unmodified	_SVDGHMKLY_					0	0	0		ENSG00000132664|ENST00000377603|POLR3F;ENST00000462997.5_1_20:18448220-18464199:+|nuORF	ENSG00000132664|ENST00000377603|POLR3F	ENSG00000132664|ENST00000377603|POLR3F	MULTI-SECPEP	A375_MHC_IP_R1	1	525.6849975585938	2	525.257859	1048.50117	-0.48703	-0.00025582	0.0053056	2.7868E-06	-0.48173	-0.00025303	525.2577139558143	64.038	0.30419	64.038	63.887	64.191	0					7	5	2	0	0	0	0.69504	1	23197	23197		7.9102	2.6133	1	997550			51801	4433	37641	37945	50596	50596					-0.021144763255506405
SVDGPWVWA	9	Unmodified	_SVDGPWVWA_					0	0	0		chr12:112834606-112847696|104|22.67|0.0|21.11|+|2|TE_info:L1ME1,L1ME1_dup23111,L1,LINE,donor,-,112834018,112834606|None,RPH3A|5	chr12:112834606-112847696|104|22.67|0.0|21.11|+|2|TE_info:L1ME1,L1ME1_dup23111,L1,LINE,donor,-,112834018,112834606|None,RPH3A|5	chr12:112834606-112847696|104|22.67|0.0|21.11|+|2|TE_info:L1ME1,L1ME1_dup23111,L1,LINE,donor,-,112834018,112834606|None,RPH3A|5	MSMS	A375_MHC_IP_R1	1	508.6742858886719	2	508.745442	1015.47633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.095	1	32.095	31.595	32.595	0								0	0	0	0.15283	1	10337	10337		16.942	2.104	1				51802	408	37642	37946	50597	50597					-0.030787881366336478
SVDGPWVWA	9	Unmodified	_SVDGPWVWA_					0	0	0		chr12:112834606-112847696|104|22.67|0.0|21.11|+|2|TE_info:L1ME1,L1ME1_dup23111,L1,LINE,donor,-,112834018,112834606|None,RPH3A|5	chr12:112834606-112847696|104|22.67|0.0|21.11|+|2|TE_info:L1ME1,L1ME1_dup23111,L1,LINE,donor,-,112834018,112834606|None,RPH3A|5	chr12:112834606-112847696|104|22.67|0.0|21.11|+|2|TE_info:L1ME1,L1ME1_dup23111,L1,LINE,donor,-,112834018,112834606|None,RPH3A|5	MSMS	A375_MHC_IP_R2	2	508.6915588378906	2	508.745442	1015.47633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.469	1	32.187	31.687	32.687	0.71857								0	0	0	0.15283	1	11127	11127		16.942	6.1184	1				51803	408	37642	37946	50598	50598					-0.030787881366336478
SVDLAGAV	8	Unmodified	_SVDLAGAV_					0	0	0			REV__ENST00000465362.1_1_2:238005439-238006382:+|nuORF	REV__ENST00000465362.1_1_2:238005439-238006382:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	730.9627685546875	1	731.393396	730.386119	-0.34045	-0.000249	-0.12906	-9.4391E-05	-0.46951	-0.00034339	731.3932155721366	54.038	0.60623	54.038	53.758	54.364	0					15	11	2	0	0	0	0.48378	2	19330	19330;19343		49.669	6.7009	1	2058500	+		51804	22388	37643	37947	50599;50600	50599					0.010141625349547212
SVDLAGAV	8	Unmodified	_SVDLAGAV_					0	0	0			REV__ENST00000465362.1_1_2:238005439-238006382:+|nuORF	REV__ENST00000465362.1_1_2:238005439-238006382:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	731.393396	730.386119	-0.34045	-0.000249	-0.12906	-9.4391E-05	-0.46951	-0.00034339	731.3932155721366	54.038	0.60623	54.038	53.758	54.364	0	-0.034282	-0.00016021	NaN	49.669	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2058500	+		51805	22388	37643	37947							0.010141625349547212
SVDLAGAV	8	Unmodified	_SVDLAGAV_					0	0	0			REV__ENST00000465362.1_1_2:238005439-238006382:+|nuORF	REV__ENST00000465362.1_1_2:238005439-238006382:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	731.393396	730.386119	-1.4017	-0.0010252	0.65178	0.0004767	-0.7499	-0.00054847	731.3938760705206	53.355	0.40752	54.106	53.842	54.249	0.75105	0.034282	0.00041089	NaN	49.669	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1607300	+		51806	22388	37643	37947							0.010141625349547212
SVDLPTHRL	9	Unmodified	_SVDLPTHRL_					0	0	0		ENST00000287218.8_1_6:38121597-38121657:+|nuORF	ENST00000287218.8_1_6:38121597-38121657:+|nuORF	ENST00000287218.8_1_6:38121597-38121657:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	519.0811157226562	2	519.290548	1036.56654	-0.56943	-0.0002957	-0.44849	-0.0002329	-1.0179	-0.0005286	519.2903540420538	31.999	0.46255	31.999	31.819	32.282	0					14	8	2	0	0	0	0.73363	1	10259	10259		10.824	10.824	1	2904900			51807	10454	37644	37948	50601	50601					0.04972261191801408
SVDPDAECKY	10	Unmodified	_SVDPDAECKY_					0	0	0		nc|ENSG00000131620|Q5XXA6-4|ANO1;nc|ENSG00000131620|Q5XXA6-3|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;ANO1|p.G52D|1|0.24|ENSG00000131620|chr11:70087798-70087798|G/A|missense_variant	nc|ENSG00000131620|Q5XXA6-4|ANO1	nc|ENSG00000131620|Q5XXA6-4|ANO1	MULTI-MSMS	A375_MHC_IP_R1	1	564.13916015625	2	563.739696	1125.46484	-0.47738	-0.00026912	-0.30161	-0.00017003	-0.77899	-0.00043915	563.7397432979758	33.231	0.50774	33.231	33.04	33.547	0					15	9	2	0	0	0	0.43567	1	10864	10864		32.037	18.131	1	2095700			51808	14603	37645	37949	50602	50602					-0.0928739801292977
SVDPDAECKY	10	Unmodified	_SVDPDAECKY_					0	0	0		nc|ENSG00000131620|Q5XXA6-4|ANO1;nc|ENSG00000131620|Q5XXA6-3|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;ANO1|p.G52D|1|0.24|ENSG00000131620|chr11:70087798-70087798|G/A|missense_variant	nc|ENSG00000131620|Q5XXA6-4|ANO1	nc|ENSG00000131620|Q5XXA6-4|ANO1	MULTI-MSMS	A375_MHC_IP_R2	2	563.70068359375	2	563.739696	1125.46484	-0.56891	-0.00032072	-0.19524	-0.00011006	-0.76415	-0.00043078	563.7394556199343	32.635	0.40663	33.372	33.213	33.62	0.73692					13	7	2	0	0	0	0.49514	1	11679	11679		28.495	14.588	1	2529900			51809	14603	37645	37949	50603	50603					-0.0928739801292977
SVDPHGFISY	10	Unmodified	_SVDPHGFISY_					0	0	0		ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50;nc|ENSG00000105197|Q3ZCQ8-3|TIMM50;TIMM50|p.R217C|1|0.25|ENSG00000105197|chr19:39486448-39486448|C/T|missense_variant	ENSG00000105197|ENST00000607714|TIMM50	ENSG00000105197|ENST00000607714|TIMM50	MULTI-MSMS	A375_MHC_IP_R1	1	561.6665649414062	2	561.266739	1120.51892	0.055409	3.1099E-05	-0.2233	-0.00012533	-0.16789	-9.4233E-05	561.2667419408554	69.453	2.4454	69.453	68.969	71.415	0					122	47	6	0	0	0	0.010691	5	25337	25109;25116;25337;25354;25818		126.57	95.929	1	684020000			51810	2574	37646	37950	50604;50605;50606;50607;50608	50606					-0.03651437799021551
SVDPHGFISY	10	Unmodified	_SVDPHGFISY_					0	0	0		ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50;nc|ENSG00000105197|Q3ZCQ8-3|TIMM50;TIMM50|p.R217C|1|0.25|ENSG00000105197|chr19:39486448-39486448|C/T|missense_variant	ENSG00000105197|ENST00000607714|TIMM50	ENSG00000105197|ENST00000607714|TIMM50	MULTI-MSMS	A375_MHC_IP_R2	2	561.6666870117188	2	561.266739	1120.51892	-0.49815	-0.00027959	-0.05213	-2.9259E-05	-0.55028	-0.00030885	561.2668318802874	68.765	2.4853	69.5	69.018	71.504	0.73511					134	48	6	0	0	0	0.0055942	4	25976	25976;26022;26192;26753		134.3	98.169	1	580780000			51811	2574	37646	37950	50609;50610;50611;50612	50609					-0.03651437799021551
SVDPHGFISY	10	Unmodified	_SVDPHGFISY_					0	0	0		ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50;nc|ENSG00000105197|Q3ZCQ8-3|TIMM50;TIMM50|p.R217C|1|0.25|ENSG00000105197|chr19:39486448-39486448|C/T|missense_variant	ENSG00000105197|ENST00000607714|TIMM50	ENSG00000105197|ENST00000607714|TIMM50	MSMS	A375_MHC_IP_R2	2	561.1926879882812	2	561.266739	1120.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.089	1	71.823	71.323	72.323	0.73421								0	0	0	0.089777	1	26959	26959		45.7	26.443	1				51812	2574	37646	37950	50613	50613					-0.03651437799021551
SVDPTQTEY	9	Unmodified	_SVDPTQTEY_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;ENST00000483030.1_1_1:115263111-115268953:-|nuORF	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	A375_MHC_IP_R1	1	520.6981201171875	2	520.232561	1038.45057	-0.65063	-0.00033848	0.26273	0.00013668	-0.3879	-0.0002018	520.2326875050212	40.003	1.6249	40.003	39.238	40.863	0					83	31	5	0	0	0	0.0061124	2	13735	13735;13875		133.05	91.213	1	107810000			51813	966	37647	37951	50614;50615	50614					-0.06711727169567894
SVDPTQTEY	9	Unmodified	_SVDPTQTEY_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;ENST00000483030.1_1_1:115263111-115268953:-|nuORF	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	A375_MHC_IP_R2	2	520.6319580078125	2	520.232561	1038.45057	-0.7209	-0.00037504	-0.0027586	-1.4351E-06	-0.72366	-0.00037647	520.2325610994383	39.419	1.3228	40.194	39.708	41.031	0.77451					79	25	5	0	0	0	0.0099737	4	14453	14414;14453;14678;14685		96.367	58.393	1	214880000			51814	966	37647	37951	50616;50617;50618;50619	50617					-0.06711727169567894
SVDPVEAEC	9	Unmodified	_SVDPVEAEC_					0	0	0			REV__CON__Q2KJF1	REV__CON__Q2KJF1	MSMS	A375_MHC_IP_R2	2	474.7057800292969	2	474.702583	947.390612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.891	1	91.625	91.125	92.125	0.7345								0	0	0	0.1499	1	34581	34581		21.747	5.8995	1		+	+	51815	15881	37648	37952	50620	50620					-0.08518741104455785
SVDSFSPSDV	10	Unmodified	_SVDSFSPSDV_					0	0	0		nc|ENSG00000189195|Q5XKL5-4|BTBD8;nc|ENSG00000189195|Q5XKL5|BTBD8	nc|ENSG00000189195|Q5XKL5-4|BTBD8	nc|ENSG00000189195|Q5XKL5-4|BTBD8	MULTI-SECPEP	A375_MHC_IP_R2	2	520.3922119140625	2	520.232561	1038.45057	-0.73029	-0.00037992	-0.41287	-0.00021479	-1.1432	-0.00059471	520.2323142528925	27.104	0.76693	27.783	27.331	28.098	0.67857					20	14	2	0	0	0	0.6774	1	9220	9220		27.629	2.2295	1	3510900			51816	14830	37649	37953	50621	50621					-0.06711727169545156
SVDSKPPVI	9	Unmodified	_SVDSKPPVI_					0	0	0		nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18	nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	MULTI-SECPEP	A375_MHC_IP_R1	1	471.6683044433594	2	471.26875	940.522947	-0.30156	-0.00014212	-0.11635	-5.4834E-05	-0.41791	-0.00019695	471.26863134286424	40.484	0.56014	40.484	40.1	40.66	0					14	10	2	0	0	0	0.074405	1	13910	13910		61.602	19.762	1	3919400			51817	2547	37650	37954	50622	50622					0.0503065169467618
SVDSKPPVI	9	Unmodified	_SVDSKPPVI_					0	0	0		nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18	nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	MULTI-MSMS	A375_MHC_IP_R2	2	471.66845703125	2	471.26875	940.522947	-0.62319	-0.00029369	0.24841	0.00011707	-0.37478	-0.00017662	471.26884217942336	39.622	0.35625	40.397	40.219	40.575	0.77451					11	6	2	0	0	0	0.024574	1	14667	14667		79.596	31.848	1	3646100			51818	2547	37650	37954	50623	50623					0.0503065169467618
SVDSPRIY	8	Unmodified	_SVDSPRIY_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MULTI-MSMS	A375_MHC_IP_R1	1	469.14288330078125	2	468.742899	935.471246	-0.4795	-0.00022476	0.19066	8.9369E-05	-0.28884	-0.00013539	468.7430245614638	37.917	0.40889	37.917	37.658	38.067	0					14	7	3	0	0	0	0.72284	1	12838	12838		27.629	2.2295	1	3242700			51819	7854	37651	37955	50624	50624					0.000929080007608718
SVDSQILYY	9	Unmodified	_SVDSQILYY_					0	0	0		nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000484580.6_1_17:26883511-26887327:-|nuORF	nc|ENSG00000087111|Q96S52-2|PIGS	nc|ENSG00000087111|Q96S52-2|PIGS	MULTI-SECPEP	A375_MHC_IP_R1	1	544.6500244140625	2	544.268947	1086.52334	-0.7945	-0.00043242	-0.044037	-2.3968E-05	-0.83854	-0.00045639	544.2688855802421	90.976	0.91345	90.976	90.488	91.401	0					46	17	4	0	0	0	0.14554	1	33415	33415		81.89	57.87	1	14711000			51820	1858	37652	37956	50625	50625					-0.01645973376139409
SVDSQILYY	9	Unmodified	_SVDSQILYY_					0	0	0		nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000484580.6_1_17:26883511-26887327:-|nuORF	nc|ENSG00000087111|Q96S52-2|PIGS	nc|ENSG00000087111|Q96S52-2|PIGS	MULTI-MSMS	A375_MHC_IP_R2	2	544.715576171875	2	544.268947	1086.52334	-0.70952	-0.00038617	0.15124	8.2315E-05	-0.55828	-0.00030385	544.268978610398	90.252	0.91449	90.984	90.597	91.511	0.7318					40	17	3	0	0	0	0.11629	1	34436	34436		47.749	3.8904	1	16569000			51821	1858	37652	37956	50626	50626					-0.01645973376139409
SVDSVELGYVP	11	Unmodified	_SVDSVELGYVP_					0	0	0			REV__nc|ENSG00000043514|Q9H3H1-6|TRIT1	REV__nc|ENSG00000043514|Q9H3H1-6|TRIT1	MULTI-SECPEP	A375_MHC_IP_R2	2	389.2630920410156	3	388.864283	1163.57102	-0.47448	-0.00018451	-0.96354	-0.00037469	-1.438	-0.00055919	388.8634797760688	20	0.45773	20.611	20.449	20.907	0.61029					22	8	4	0	0	0	0.84606	1	6202	6202		9.2438	0	1	2379100	+		51822	16351	37653	37957	50627	50627					-0.004223191759365363
SVDSVTSEI	9	Unmodified	_SVDSVTSEI_					0	0	0		ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	MULTI-SECPEP	A375_MHC_IP_R1	1	935.81298828125	1	936.452033	935.444756	0.10096	9.4548E-05	-0.036729	-3.4395E-05	0.064235	6.0153E-05	936.4518054381119	56.317	0.65915	56.317	55.991	56.65	0					28	12	3	0	0	0	0.75466	1	20264	20264		12.532	0.89125	1	13205000			51823	1189	37654	37958	50628	50628					-0.025548256812271575
SVDSYDSFFH	10	Unmodified	_SVDSYDSFFH_					0	0	0			REV__ENST00000303383.7_2_16:46615621-46615675:-|nuORF	REV__ENST00000303383.7_2_16:46615621-46615675:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	601.7140502929688	2	602.251286	1202.48802	-1.1296	-0.00068033	0.52412	0.00031565	-0.60552	-0.00036468	602.2515179728858	36.989	0.71142	37.759	37.308	38.02	0.7709					26	13	3	0	0	0	0.91909	1	13345	13345		13.906	9.9617	1	8577600	+		51824	23445	37655	37959	50629	50629					-0.10512635903955925
SVEELRGF	8	Unmodified	_SVEELRGF_					0	0	0		LIFR|p.P748S|1|0.24|ENSG00000113594|chr5:38489171-38489171|G/A|missense_variant	LIFR|p.P748S|1|0.24|ENSG00000113594|chr5:38489171-38489171|G/A|missense_variant	LIFR|p.P748S|1|0.24|ENSG00000113594|chr5:38489171-38489171|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	469.142822265625	2	468.742899	935.471246	-1.2508	-0.00058629	0.44652	0.0002093	-0.80424	-0.00037698	468.7432539500848	37.121	0.35472	37.892	37.665	38.02	0.7709					12	6	2	0	0	0	0.70783	1	13603	13603		32.305	1.6689	1	2353300			51825	14296	37656	37960	50630	50630					0.0009290800078360917
SVEELRGF	8	Unmodified	_SVEELRGF_					0	0	0		LIFR|p.P748S|1|0.24|ENSG00000113594|chr5:38489171-38489171|G/A|missense_variant	LIFR|p.P748S|1|0.24|ENSG00000113594|chr5:38489171-38489171|G/A|missense_variant	LIFR|p.P748S|1|0.24|ENSG00000113594|chr5:38489171-38489171|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	468.742899	935.471246	-0.4795	-0.00022476	0.19066	8.9369E-05	-0.28884	-0.00013539	468.7430245614638	37.917	0.40889	37.917	37.658	38.067	0	0.012466	-0.00014806	NaN	32.305	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3242700			51826	14296	37656	37960							0.0009290800078360917
SVEESVLLY	9	Unmodified	_SVEESVLLY_					0	0	0		ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1038.899169921875	1	1038.53537	1037.52809	0.17134	0.00017795	-0.31673	-0.00032894	-0.14539	-0.00015099	1038.534990544809	98.884	0.66071	98.884	98.607	99.268	0					27	12	3	0	0	0	0.018481	1	36328	36328		85.357	0	1	5253100			51827	3059	37657	37961	50631	50631					0.0108291076662681
SVEESVLLY	9	Unmodified	_SVEESVLLY_					0	0	0		ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	520.1707763671875	2	519.771322	1037.52809	-0.50448	-0.00026221	-0.012324	-6.4056E-06	-0.5168	-0.00026862	519.7711996448267	98.879	0.81401	98.879	98.557	99.371	0					36	15	3	0	0	0	0.050875	1	36297	36297		85.357	18.013	1	5285900			51828	3059	37657	37961	50632	50632					0.0108291076662681
SVEESVLLY	9	Unmodified	_SVEESVLLY_					0	0	0		ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	520.17138671875	2	519.771322	1037.52809	-0.68762	-0.0003574	0.21475	0.00011162	-0.47286	-0.00024578	519.7713522312771	98.094	0.76451	98.854	98.487	99.251	0.75977					31	14	3	0	0	0	0.033126	1	37202	37202		85.357	21.12	1	6442600			51829	3059	37657	37961	50633	50633					0.0108291076662681
SVEESVLLY	9	Unmodified	_SVEESVLLY_					0	0	0		ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	1038.53537	1037.52809	0.027728	2.8797E-05	-0.10821	-0.00011238	-0.080479	-8.358E-05	1038.535072697498	98.127	0.76367	98.886	98.538	99.301	0.75977	0.0013361	0.0001224	NaN	85.357	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4997800			51830	3059	37657	37961							0.0108291076662681
SVEKIVNIFN	10	Unmodified	_SVEKIVNIFN_					0	0	0		ENSG00000132906|ENST00000333868|CASP9;nc|ENSG00000132906|P55211-4|CASP9	ENSG00000132906|ENST00000333868|CASP9	ENSG00000132906|ENST00000333868|CASP9	MULTI-MSMS	A375_MHC_IP_R1	1	387.9483947753906	3	388.220401	1161.63937	0.18557	7.2044E-05	0.013777	5.3485E-06	0.19935	7.7392E-05	388.2202943916155	60.734	0.50882	60.734	60.464	60.973	0					28	9	4	0	0	0	0.71175	1	21876	21876		7.0371	0.80273	1	8623800			51831	4461	37658	37962	50634	50634					0.06501970194585738
SVELFRAPV	9	Unmodified	_SVELFRAPV_					0	0	0		ENST00000495397.1_1_1:161696362-161697449:+|nuORF	ENST00000495397.1_1_1:161696362-161697449:+|nuORF	ENST00000495397.1_1_1:161696362-161697449:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	509.67181396484375	2	509.290017	1016.56548	-0.26326	-0.00013408	0.41633	0.00021203	0.15307	7.7958E-05	509.28992451383493	51.678	0.30345	51.678	51.424	51.728	0					10	5	2	0	0	0	0.58271	1	18310	18310		14.838	0	1	950620			51832	12707	37659	37963	50635	50635					0.05786046822890967
SVENYTLTI	9	Unmodified	_SVENYTLTI_					0	0	0		ENSG00000213614|ENST00000268097|HEXA;ENST00000563908.1_1_15:72647792-72668286:-|nuORF;ENST00000569509.5_1_15:72643558-72668681:-|nuORF;ENST00000568777.5_1_15:72647792-72649010:-|nuORF	ENSG00000213614|ENST00000268097|HEXA	ENSG00000213614|ENST00000268097|HEXA	MULTI-MSMS	A375_MHC_IP_R1	1	520.2259521484375	2	520.268947	1038.52334	-0.45696	-0.00023774	-0.20728	-0.00010784	-0.66424	-0.00034558	520.2687374204141	102.04	1.1635	102.04	101.7	102.86	0					50	22	4	0	0	0	0.53367	1	37706	37706		18.146	4.2403	1	9826400			51833	9574	37660	37964	50636	50636					0.005620266238793192
SVENYTLTI	9	Unmodified	_SVENYTLTI_					0	0	0		ENSG00000213614|ENST00000268097|HEXA;ENST00000563908.1_1_15:72647792-72668286:-|nuORF;ENST00000569509.5_1_15:72643558-72668681:-|nuORF;ENST00000568777.5_1_15:72647792-72649010:-|nuORF	ENSG00000213614|ENST00000268097|HEXA	ENSG00000213614|ENST00000268097|HEXA	MULTI-MSMS	A375_MHC_IP_R2	2	520.6685791015625	2	520.268947	1038.52334	-0.54849	-0.00028536	-0.11203	-5.8287E-05	-0.66053	-0.00034365	520.2687342652437	101.27	1.3231	102.04	101.65	102.97	0.76428					62	25	4	0	0	0	0.2002	1	38568	38568		37.974	7.3375	1	15786000			51834	9574	37660	37964	50637	50637					0.005620266238793192
SVEQSRRAQA	10	Unmodified	_SVEQSRRAQA_					0	0	0		ENSG00000129204|ENST00000574788|USP6;nc|ENSG00000129204|P35125-2|USP6;ENST00000575709.5_1_17:5042349-5076270:+|nuORF;USP6|p.E1029K|1|0.42|ENSG00000129204|chr17:5167980-5167980|G/A|missense_variant;ENSG00000170832|ENST00000300896|USP32	ENSG00000129204|ENST00000574788|USP6;ENSG00000170832|ENST00000300896|USP32	ENSG00000170832|ENST00000300896|USP32	MULTI-MSMS	A375_MHC_IP_R2	2	380.2682800292969	3	377.867021	1130.57923	0.18166	6.8644E-05	-3.5629	-0.0013463	-3.3812	-0.0012777	377.8645934669787	27.588	1.2169	28.266	27.843	29.06	0.67857					115	23	8	0	0	0	0.63639	1	9620	9620		11.518	1.3673	1	268510000			51835	7544;4181	37661	37965	50638	50638					0.01916672584047774
SVEYTGDANNY	11	Unmodified	_SVEYTGDANNY_					0	0	0			REV__ENSG00000117971|ENST00000261751|CHRNB4	REV__ENSG00000117971|ENST00000261751|CHRNB4	MSMS	A375_MHC_IP_R1	1	616.6560668945312	2	616.756932	1231.49931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.587	1	83.587	83.087	84.087	0								0	0	0	0.15837	1	30589	30589		15.248	4.4246	1		+		51836	18025	37662	37966	50639	50639					-0.10717858600469299
SVFAHPRKL	9	Unmodified	_SVFAHPRKL_					0	0	0		ENSG00000268606|ENST00000684311|MAGEA2;ENSG00000183305|ENST00000682532|MAGEA2B;chrX:152753623-152753788|269|13.78|0.02|9.76|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152753391-152753788|277|27.37|0.03|9.77|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152753391-152753542|267|20.52|0.02|9.74|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152752513-152753788|298|28.03|0.06|8.93|-|ENST00000620710|MAGEA2,MAGEA2;chrX:152752513-152753313|286|46.87|0.07|9.47|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751822-152752394|297|32.94|0.06|9.21|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751574-152753788|270|15.7|0.02|9.72|-|ENST00000611674|MAGEA2,MAGEA2;chrX:152751574-152752394|306|57.07|0.12|8.92|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152751574-152751725|302|47.9|0.07|9.45|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751428-152751509|319|92.49|0.18|9.0|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152714682-152716896|294|25.49|0.02|10.05|+|ENST00000370293|MAGEA2B,MAGEA2B;ENSG00000213401|ENST00000393869|MAGEA12;chrX:152733859-152736087|323|82.7|0.12|9.43|+|ENST00000357916|MAGEA12,MAGEA12	ENSG00000268606|ENST00000684311|MAGEA2;ENSG00000213401|ENST00000393869|MAGEA12	ENSG00000213401|ENST00000393869|MAGEA12	MULTI-MSMS	A375_MHC_IP_R1	1	353.2657775878906	3	352.210059	1053.60835	-0.18059	-6.3607E-05	-0.024522	-8.6367E-06	-0.20511	-7.2243E-05	352.2100822270049	24.723	0.85841	24.723	24.296	25.154	0					49	16	4	0	0	0	0.04447	2	7080	7051;7080		66.457	49.344	1	444520000			51837	523;522	37663	37967	50640;50641	50641					0.08368861670987826
SVFAHPRKL	9	Unmodified	_SVFAHPRKL_					0	0	0		ENSG00000268606|ENST00000684311|MAGEA2;ENSG00000183305|ENST00000682532|MAGEA2B;chrX:152753623-152753788|269|13.78|0.02|9.76|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152753391-152753788|277|27.37|0.03|9.77|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152753391-152753542|267|20.52|0.02|9.74|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152752513-152753788|298|28.03|0.06|8.93|-|ENST00000620710|MAGEA2,MAGEA2;chrX:152752513-152753313|286|46.87|0.07|9.47|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751822-152752394|297|32.94|0.06|9.21|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751574-152753788|270|15.7|0.02|9.72|-|ENST00000611674|MAGEA2,MAGEA2;chrX:152751574-152752394|306|57.07|0.12|8.92|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152751574-152751725|302|47.9|0.07|9.45|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751428-152751509|319|92.49|0.18|9.0|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152714682-152716896|294|25.49|0.02|10.05|+|ENST00000370293|MAGEA2B,MAGEA2B;ENSG00000213401|ENST00000393869|MAGEA12;chrX:152733859-152736087|323|82.7|0.12|9.43|+|ENST00000357916|MAGEA12,MAGEA12	ENSG00000268606|ENST00000684311|MAGEA2;ENSG00000213401|ENST00000393869|MAGEA12	ENSG00000213401|ENST00000393869|MAGEA12	MULTI-SECPEP	A375_MHC_IP_R1	1	528.2109375	2	527.811451	1053.60835	-0.5926	-0.00031278	-0.020983	-1.1075E-05	-0.61358	-0.00032386	527.8113679229654	24.723	0.55497	24.723	24.447	25.002	0					25	10	3	0	0	0	0.30925	1	7084	7084		49.554	49.554	1	36412000			51838	523;522	37663	37967	50642	50642					0.08368861670987826
SVFAHPRKL	9	Unmodified	_SVFAHPRKL_					0	0	0		ENSG00000268606|ENST00000684311|MAGEA2;ENSG00000183305|ENST00000682532|MAGEA2B;chrX:152753623-152753788|269|13.78|0.02|9.76|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152753391-152753788|277|27.37|0.03|9.77|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152753391-152753542|267|20.52|0.02|9.74|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152752513-152753788|298|28.03|0.06|8.93|-|ENST00000620710|MAGEA2,MAGEA2;chrX:152752513-152753313|286|46.87|0.07|9.47|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751822-152752394|297|32.94|0.06|9.21|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751574-152753788|270|15.7|0.02|9.72|-|ENST00000611674|MAGEA2,MAGEA2;chrX:152751574-152752394|306|57.07|0.12|8.92|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152751574-152751725|302|47.9|0.07|9.45|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751428-152751509|319|92.49|0.18|9.0|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152714682-152716896|294|25.49|0.02|10.05|+|ENST00000370293|MAGEA2B,MAGEA2B;ENSG00000213401|ENST00000393869|MAGEA12;chrX:152733859-152736087|323|82.7|0.12|9.43|+|ENST00000357916|MAGEA12,MAGEA12	ENSG00000268606|ENST00000684311|MAGEA2;ENSG00000213401|ENST00000393869|MAGEA12	ENSG00000213401|ENST00000393869|MAGEA12	MULTI-MSMS	A375_MHC_IP_R2	2	352.6100158691406	3	352.210059	1053.60835	-0.48099	-0.00016941	0.18434	6.4925E-05	-0.29665	-0.00010448	352.2101290240534	23.984	0.96685	24.614	24.232	25.199	0.63014					53	18	4	0	0	0	0.54799	1	7742	7742		17.443	5.9248	1	323060000			51839	523;522	37663	37967	50643	50643					0.08368861670987826
SVFAHPRKL	9	Unmodified	_SVFAHPRKL_					0	0	0		ENSG00000268606|ENST00000684311|MAGEA2;ENSG00000183305|ENST00000682532|MAGEA2B;chrX:152753623-152753788|269|13.78|0.02|9.76|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152753391-152753788|277|27.37|0.03|9.77|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152753391-152753542|267|20.52|0.02|9.74|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152752513-152753788|298|28.03|0.06|8.93|-|ENST00000620710|MAGEA2,MAGEA2;chrX:152752513-152753313|286|46.87|0.07|9.47|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751822-152752394|297|32.94|0.06|9.21|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751574-152753788|270|15.7|0.02|9.72|-|ENST00000611674|MAGEA2,MAGEA2;chrX:152751574-152752394|306|57.07|0.12|8.92|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152751574-152751725|302|47.9|0.07|9.45|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751428-152751509|319|92.49|0.18|9.0|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152714682-152716896|294|25.49|0.02|10.05|+|ENST00000370293|MAGEA2B,MAGEA2B;ENSG00000213401|ENST00000393869|MAGEA12;chrX:152733859-152736087|323|82.7|0.12|9.43|+|ENST00000357916|MAGEA12,MAGEA12	ENSG00000268606|ENST00000684311|MAGEA2;ENSG00000213401|ENST00000393869|MAGEA12	ENSG00000213401|ENST00000393869|MAGEA12	MULTI-MSMS	A375_MHC_IP_R2	2	528.2111206054688	2	527.811451	1053.60835	-0.74729	-0.00039443	0.026437	1.3954E-05	-0.72085	-0.00038048	527.8114316972437	23.984	0.45914	24.614	24.485	24.944	0.63014					14	8	2	0	0	0	0.0090873	2	7809	7809;7919		122.18	86.052	1	23095000			51840	523;522	37663	37967	50644;50645	50644					0.08368861670987826
SVFCCCCCCS	10	Unmodified	_SVFCCCCCCS_					0	0	0		ENST00000510457.1_1_4:48091737-48136211:-|nuORF;ENSG00000074966|ENST00000264316|TXK	ENST00000510457.1_1_4:48091737-48136211:-|nuORF	ENST00000510457.1_1_4:48091737-48136211:-|nuORF	MSMS	A375_MHC_IP_R1	1	529.134765625	2	529.140555	1056.26656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.468	1	84.468	83.968	84.968	0								0	0	0	0.15642	1	30941	30941		0	0	1				51841	1598	37664	37968	50646	50646					-0.25932641055464956
SVFIERTQREG	11	Unmodified	_SVFIERTQREG_					0	0	0		PTPN21|p.T679I|1|0.26|ENSG00000070778|chr14:88479395-88479395|G/A|missense_variant	PTPN21|p.T679I|1|0.26|ENSG00000070778|chr14:88479395-88479395|G/A|missense_variant	PTPN21|p.T679I|1|0.26|ENSG00000070778|chr14:88479395-88479395|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	441.63330078125	3	441.233481	1320.67861	-0.2589	-0.00011424	0.02629	1.16E-05	-0.23261	-0.00010264	441.2333527222162	27.394	0.40734	28.073	27.843	28.251	0.67857					17	7	4	0	0	0	0.73354	1	9387	9387		5.5233	0	1	5683800			51842	15245	37665	37969	50647	50647					0.031100704781238164
SVFMAPILKFI	11	Unmodified	_SVFMAPILKFI_					0	0	0		nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4	nc|ENSG00000080493|Q9Y6R1-2|SLC4A4	nc|ENSG00000080493|Q9Y6R1-2|SLC4A4	MULTI-MSMS	A375_MHC_IP_R1	1	633.769287109375	2	633.369952	1264.72535	-0.97954	-0.00062041	0.020534	1.3006E-05	-0.95901	-0.00060741	633.3699743164558	137.71	2.7485	137.71	137.39	140.13	0					79	53	2	0	0	0	0.73795	1	53143	53143		1.3295	1.0225	1	1169400			51843	1713	37666	37970	50648	50648					0.10357838775735217
SVFPGARLL	9	Unmodified	_SVFPGARLL_					0	0	0		ENSG00000142453|ENST00000327064|CARM1;nc|ENSG00000142453|Q86X55-1|CARM1;nc|ENSG00000142453|Q86X55-2|CARM1	ENSG00000142453|ENST00000327064|CARM1	ENSG00000142453|ENST00000327064|CARM1	MULTI-MSMS	A375_MHC_IP_R1	1	480.6867980957031	2	480.287277	958.560001	-0.35038	-0.00016828	0.22026	0.00010579	-0.13011	-6.2492E-05	480.28734730719196	88.216	1.1713	88.216	87.848	89.019	0					62	22	4	0	0	0	0.033557	3	32312	32312;32492;32529		68.081	22.06	1	90228000			51844	5308	37667	37971	50649;50650;50651	50649					0.07906368031081001
SVFPGARLL	9	Unmodified	_SVFPGARLL_					0	0	0		ENSG00000142453|ENST00000327064|CARM1;nc|ENSG00000142453|Q86X55-1|CARM1;nc|ENSG00000142453|Q86X55-2|CARM1	ENSG00000142453|ENST00000327064|CARM1	ENSG00000142453|ENST00000327064|CARM1	MULTI-MSMS	A375_MHC_IP_R2	2	480.6868591308594	2	480.287277	958.560001	-0.455	-0.00021853	-0.0053234	-2.5568E-06	-0.46032	-0.00022109	480.2872070615946	87.162	1.4669	87.895	87.612	89.078	0.733					82	28	5	0	0	0	0.067501	2	33303	33089;33303		57.471	15.377	1	67273000			51845	5308	37667	37971	50652;50653	50653					0.07906368031081001
SVFPRAVAL	9	Unmodified	_SVFPRAVAL_					0	0	0			REV__ENSG00000213903|ENST00000345363|LTB4R	REV__ENSG00000213903|ENST00000345363|LTB4R	MULTI-MSMS	A375_MHC_IP_R2	2	481.2096252441406	2	480.287277	958.560001	-0.455	-0.00021853	-0.0053234	-2.5568E-06	-0.46032	-0.00022109	480.2872070615946	87.162	1.4669	87.895	87.612	89.078	0.733					82	28	5	0	0	0	0.35581	1	33294	33294		26.884	0	1	67273000	+		51846	22633	37668	37972	50654	50654					0.07906368031081001
SVFVETFVQK	10	Unmodified	_SVFVETFVQK_					0	0	0		nc|ENSG00000170786|Q8N3Y7-2|SDR16C5;ENSG00000170786|ENST00000303749|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	MULTI-MSMS	A375_MHC_IP_R2	2	395.616455078125	3	395.216768	1182.62847	-0.55207	-0.00021819	-0.99917	-0.00039489	-1.5512	-0.00061308	395.2162844785013	33.518	0.65857	34.27	33.891	34.55	0.75225					38	12	4	0	0	0	0.56097	1	11976	11976		16.275	2.7559	1	10310000			51847	7539	37669	37973	50655	50655					0.04446567820264136
SVFYVFYEQYL	11	Unmodified	_SVFYVFYEQYL_					0	0	0		NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	486.62628173828125	3	486.571099	1456.69147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.488	1	58.237	57.737	58.737	0.74894								0	0	0	0.16297	1	21739	21739		1.3296	0.11481	1				51848	5244	37670	37974	50656	50656					-0.018609111823252533
SVGEIFSDDF	10	Unmodified	_SVGEIFSDDF_					0	0	0			REV__ZDHHC6|p.L373F|1|0.33|ENSG00000023041|chr10:112432261-112432261|G/A|missense_variant	REV__ZDHHC6|p.L373F|1|0.33|ENSG00000023041|chr10:112432261-112432261|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	558.66796875	2	558.248212	1114.48187	-0.39421	-0.00022007	-0.64304	-0.00035898	-1.0373	-0.00057904	558.2475622711238	42.461	0.45487	42.461	42.183	42.638	0					17	8	3	0	0	0	0.87163	1	14620	14620		13.906	6.6168	1	4152600	+		51849	29016	37671	37975	50657	50657					-0.07079154135476529
SVGKKKKK	8	Unmodified	_SVGKKKKK_					0	0	0			REV__ENST00000565844.1_1_16:19721758-19726357:-|nuORF	REV__ENST00000565844.1_1_16:19721758-19726357:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	903.5359497070312	1	902.614562	901.607286	0.16555	0.00014942	0.19479	0.00017582	0.36034	0.00032525	902.6178403911871	112.49	0.20494	112.49	112.38	112.59	0					6	3	2	0	0	0	0.77797	1	41229	41229		2.3027	0	1	1834500	+		51850	17287	37672	37976	50658	50658					0.15254647302083413
SVGNACRL	8	Unmodified	_SVGNACRL_					0	0	0		ENSG00000105223|ENST00000409735|PLD3	ENSG00000105223|ENST00000409735|PLD3	ENSG00000105223|ENST00000409735|PLD3	MULTI-SECPEP	A375_MHC_IP_R1	1	819.8905029296875	1	819.414148	818.406871	-0.094296	-7.7267E-05	-0.11276	-9.2393E-05	-0.20705	-0.00016966	819.4142610123133	116.62	0.81278	116.62	116.09	116.9	0					19	15	2	0	0	0	0.96266	1	42642	42642		7.2892	0	1	16371000			51851	2578	37673	37977	50659	50659					-0.009595703570312253
SVGRTLLR	8	Unmodified	_SVGRTLLR_					0	0	0		NUP210|p.L1453R|1|0.18|ENSG00000132182|chr3:13327366-13327366|A/C|missense_variant	NUP210|p.L1453R|1|0.18|ENSG00000132182|chr3:13327366-13327366|A/C|missense_variant	NUP210|p.L1453R|1|0.18|ENSG00000132182|chr3:13327366-13327366|A/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	451.68243408203125	2	451.282526	900.550499	-0.50332	-0.00022714	-0.070797	-3.1949E-05	-0.57412	-0.00025909	451.28242144750243	35.13	0.40354	35.893	35.627	36.03	0.76338					10	7	2	0	0	0	0.972	1	12759	12759		3.2813	0	1	1792200			51852	15038	37674	37978	50660	50660					0.09624599745575324
SVGSPVKPAVT	11	Unmodified	_SVGSPVKPAVT_					0	0	0			REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-SECPEP	A375_MHC_IP_R2	2	521.6713256835938	2	521.300581	1040.58661	-0.4447	-0.00023182	-0.42822	-0.00022323	-0.87292	-0.00045505	521.3002984153975	85.717	1.376	86.453	85.523	86.899	0.73601					44	26	3	0	0	0	0.92455	1	32304	32304		11.495	0	1	8255500	+		51853	16654	37675	37979	50661	50661					0.06794012131740601
SVGSVLLTV	9	Unmodified	_SVGSVLLTV_					0	0	0		nc|ENSG00000140945|P55290-5|CDH13;ENSG00000140945|ENST00000567109|CDH13;nc|ENSG00000140945|P55290-4|CDH13	nc|ENSG00000140945|P55290-5|CDH13	nc|ENSG00000140945|P55290-5|CDH13	MULTI-MSMS	A375_MHC_IP_R1	1	874.9243774414062	1	874.52441	873.517133	-0.019016	-1.663E-05	0.35573	0.00031109	0.33671	0.00029446	874.5246321086732	108.33	1.1139	108.33	107.9	109.02	0					51	21	4	0	0	0	0.0090669	1	39938	39938		100.37	25.949	1	42768000			51854	5195	37676	37980	50662	50662					0.07531553182991502
SVGSVLLTV	9	Unmodified	_SVGSVLLTV_					0	0	0		nc|ENSG00000140945|P55290-5|CDH13;ENSG00000140945|ENST00000567109|CDH13;nc|ENSG00000140945|P55290-4|CDH13	nc|ENSG00000140945|P55290-5|CDH13	nc|ENSG00000140945|P55290-5|CDH13	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	874.52441	873.517133	-0.61467	-0.00053754	0.075347	6.5893E-05	-0.53932	-0.00047165	874.5244228327077	107.32	1.1202	108.07	107.69	108.81	0.75436	-0.13055	-0.00014557	NaN	100.37	50	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50226000			51855	5195	37676	37980							0.07531553182991502
SVGTPLARASI	11	Unmodified	_SVGTPLARASI_					0	0	0		nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E;ENSG00000198216|ENST00000367573|CACNA1E	nc|ENSG00000198216|Q15878-2|CACNA1E	nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-SECPEP	A375_MHC_IP_R1	1	536.7109375	2	536.31148	1070.60841	-0.94094	-0.00050464	-0.92805	-0.00049773	-1.869	-0.0010024	536.3113191704788	24.067	0.25393	24.067	23.94	24.194	0					9	4	3	0	0	0	0.9836	1	6750	6750		11.495	1.4208	1	9515100			51856	9243	37677	37981	50663	50663					0.07592816880310238
SVGTQPPAV	9	Unmodified	_SVGTQPPAV_					0	0	0		ENSG00000161021|ENST00000292599|MAML1	ENSG00000161021|ENST00000292599|MAML1	ENSG00000161021|ENST00000292599|MAML1	MULTI-MSMS	A375_MHC_IP_R2	2	428.6316223144531	2	428.232168	854.449782	-0.24615	-0.00010541	-0.43529	-0.0001864	-0.68144	-0.00029181	428.23187742623463	39.977	0.50658	40.752	40.575	41.082	0.77451					13	9	2	0	0	0	0.091096	1	14816	14816		52.268	18.081	1	1953400			51857	6460	37678	37982	50664	50664					0.016735229720438838
SVGTQPPAV	9	Unmodified	_SVGTQPPAV_					0	0	0		ENSG00000161021|ENST00000292599|MAML1	ENSG00000161021|ENST00000292599|MAML1	ENSG00000161021|ENST00000292599|MAML1	MULTI-MATCH	A375_MHC_IP_R1	1		2	428.232168	854.449782	-0.09554	-4.0913E-05	0.27665	0.00011847	0.18111	7.7556E-05	428.2321716197675	40.745	0.35387	40.745	40.559	40.913	0	-0.0035852	0.0004114	NaN	52.268	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1152400			51858	6460	37678	37982							0.016735229720438838
SVGWLVAF	8	Unmodified	_SVGWLVAF_					0	0	0			REV__ENST00000567034.5_1_16:30199450-30200005:+|nuORF	REV__ENST00000567034.5_1_16:30199450-30200005:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	440.1401672363281	2	439.742171	877.469789	-0.13861	-6.0954E-05	-3.1326	-0.0013775	-3.2712	-0.0014385	439.7402061706936	43.855	0.5593	43.855	43.502	44.061	0					14	10	2	0	0	0	0.86765	1	15313	15313		32.117	0	1	2267800	+		51859	26247	37679	37983	50665	50665					0.02615318702657987
SVGYFTFQD	9	Unmodified	_SVGYFTFQD_					0	0	0		ANK2|p.S3722F|1|0.5|ENSG00000145362|chr4:113367698-113367698|C/T|missense_variant	ANK2|p.S3722F|1|0.5|ENSG00000145362|chr4:113367698-113367698|C/T|missense_variant	ANK2|p.S3722F|1|0.5|ENSG00000145362|chr4:113367698-113367698|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	532.6406860351562	2	532.24019	1062.46583	-0.56713	-0.00030185	1.3736	0.00073108	0.80646	0.00042923	532.240718011163	47.442	0.75763	47.442	47.263	48.02	0					21	14	2	0	0	0	0.4867	1	16701	16701		20.454	1.1966	1	5847100			51860	135	37680	37984	50666	50666					-0.06290815581678544
SVHHPPPP	8	Unmodified	_SVHHPPPP_					0	0	0			REV__ENST00000332047.9_1_3:134204707-134214160:+|nuORF	REV__ENST00000332047.9_1_3:134204707-134214160:+|nuORF	MSMS	A375_MHC_IP_R2	2	434.1419372558594	2	434.22722	866.439886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.374	1	44.147	43.647	44.647	0.7724								0	0	0	0.16876	1	16159	16159		15.768	4.6538	1		+		51861	23634	37681	37985	50667	50667					0.0013237975732636187
SVHKGFAFV	9	Unmodified	_SVHKGFAFV_					0	0	0		nc|ENSG00000092199|P07910|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000092199|ENST00000553300|HNRNPC;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000277058|ENST00000617807|HNRNPCL3;HNRNPCL1|p.E212Dfs*7|1|0.23|ENSG00000179172|chr1:12847653-12847654|CC/-|frameshift_variant;ENST00000556181.1_1_14:58987979-58988105:+|nuORF	nc|ENSG00000092199|P07910|HNRNPC	nc|ENSG00000092199|P07910|HNRNPC	MULTI-SECPEP	A375_MHC_IP_R1	1	496.6715393066406	2	496.271627	990.528701	-0.005691	-2.8243E-06	-0.19274	-9.5653E-05	-0.19843	-9.8477E-05	496.27142486771703	45.303	1.2666	45.303	44.42	45.687	0					50	24	4	0	0	0	0.10103	1	15813	15813		53.833	37.986	1	19835000			51862	1998	37682	37986	50668	50668					0.03305794997004341
SVHKGFAFV	9	Unmodified	_SVHKGFAFV_					0	0	0		nc|ENSG00000092199|P07910|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000092199|ENST00000553300|HNRNPC;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000277058|ENST00000617807|HNRNPCL3;HNRNPCL1|p.E212Dfs*7|1|0.23|ENSG00000179172|chr1:12847653-12847654|CC/-|frameshift_variant;ENST00000556181.1_1_14:58987979-58988105:+|nuORF	nc|ENSG00000092199|P07910|HNRNPC	nc|ENSG00000092199|P07910|HNRNPC	MULTI-MSMS	A375_MHC_IP_R2	2	497.1726989746094	2	496.271627	990.528701	-0.37429	-0.00018575	-0.43341	-0.00021509	-0.80769	-0.00040084	496.27142510577295	44.23	0.96027	44.999	44.43	45.39	0.7691					45	18	3	0	0	0	0.22528	1	16454	16454		36.127	7.6402	1	20429000			51863	1998	37682	37986	50669	50669					0.03305794997004341
SVHVGPWNL	9	Unmodified	_SVHVGPWNL_					0	0	0			REV__ENST00000486482.1_1_19:10221837-10222140:+|nuORF	REV__ENST00000486482.1_1_19:10221837-10222140:+|nuORF	MSMS	A375_MHC_IP_R1	1	504.69171142578125	2	504.766709	1007.51886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.886	1	84.886	84.386	85.386	0								0	0	0	0.15283	1	31101	31101		16.942	2.3606	1		+		51864	25322	37683	37987	50670	50670					0.015406069916139131
SVHVHNRSEYY	11	Unmodified	_SVHVHNRSEYY_					0	0	0			REV__ENSG00000139549|ENST00000649637|DHH	REV__ENSG00000139549|ENST00000649637|DHH	MULTI-MSMS	A375_MHC_IP_R1	1	696.2276000976562	2	695.828557	1389.64256	-0.6182	-0.00043016	-0.61181	-0.00042572	-1.23	-0.00085588	695.8279770322996	31.895	0.40832	31.895	31.667	32.075	0					15	7	3	0	0	0	0.73016	1	10254	10254		8.7454	0.58988	1	4505400	+		51865	19164	37684	37988	50671	50671					-0.036673866987030124
SVIDHIHLI	9	Unmodified	_SVIDHIHLI_					0	0	0		nc|ENSG00000123159|O14908-2|GIPC1;ENSG00000123159|ENST00000393033|GIPC1	nc|ENSG00000123159|O14908-2|GIPC1	nc|ENSG00000123159|O14908-2|GIPC1	MULTI-SECPEP	A375_MHC_IP_R1	1	524.2032470703125	2	523.803291	1045.59203	-0.62986	-0.00032992	0.88267	0.00046235	0.25281	0.00013243	523.804067638211	80.794	0.96311	80.794	80.39	81.353	0					52	18	4	0	0	0	0.011207	1	29491	29491		125.62	77.279	1	10686000			51866	3831	37685	37989	50672	50672					0.07105735714230832
SVIDHIHLI	9	Unmodified	_SVIDHIHLI_					0	0	0		nc|ENSG00000123159|O14908-2|GIPC1;ENSG00000123159|ENST00000393033|GIPC1	nc|ENSG00000123159|O14908-2|GIPC1	nc|ENSG00000123159|O14908-2|GIPC1	MULTI-SECPEP	A375_MHC_IP_R2	2	524.203125	2	523.803291	1045.59203	-0.47969	-0.00025126	0.83707	0.00043846	0.35738	0.0001872	523.8042504116044	79.787	0.71186	80.531	80.299	81.011	0.74474					25	13	3	0	0	0	0.011358	1	30266	30266		120.45	82.299	1	9672500			51867	3831	37685	37989	50673	50673					0.07105735714230832
SVIEQIVYV	9	Unmodified	_SVIEQIVYV_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	A375_MHC_IP_R1	1	525.6972045898438	2	525.297507	1048.58046	-0.20302	-0.00010665	0.92372	0.00048523	0.7207	0.00037858	525.2979883980965	116.71	0.55975	116.71	116.45	117.01	0					23	10	3	0	0	0	0.033557	1	42886	42886		71.922	19.654	1	8750800			51868	1647	37686	37990	50674	50674					0.05811493900228015
SVIEQLFFV	9	Unmodified	_SVIEQLFFV_					0	0	0		NR2F1|p.R392C|1|0.58|ENSG00000175745|chr5:93593744-93593744|C/T|missense_variant;ENST00000506162.1_1_5:92927828-92929545:+|nuORF;nc|ENSG00000185551|P24468-3|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2;ENSG00000185551|ENST00000394166|NR2F2;ENSG00000175745|ENST00000327111|NR2F1	NR2F1|p.R392C|1|0.58|ENSG00000175745|chr5:93593744-93593744|C/T|missense_variant	NR2F1|p.R392C|1|0.58|ENSG00000175745|chr5:93593744-93593744|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	541.6995849609375	2	541.30005	1080.58555	-0.88976	-0.00048163	0.825	0.00044657	-0.06476	-3.5055E-05	541.3005698102764	134.35	0.81032	134.35	133.97	134.78	0					24	15	3	0	0	0	0.077986	1	51812	51812		99.755	43.578	1	35756000			51869	7979	37687	37991	50675	50675					0.04847797762840855
SVIFPVIAF	9	Unmodified	_SVIFPVIAF_					0	0	0			REV__ENSG00000121314|ENST00000240615|TAS2R8	REV__ENSG00000121314|ENST00000240615|TAS2R8	MULTI-SECPEP	A375_MHC_IP_R2	2	496.6144714355469	2	496.794404	991.574254	-0.40787	-0.00020263	-2.643	-0.001313	-3.0509	-0.0015156	496.79278971494483	88.016	0.86175	88.748	88.316	89.178	0.7318					23	16	2	0	0	0	0.71541	1	33630	33630		11.64	0	1	8061200	+		51870	18156	37688	37992	50676	50676					0.07813020459366271
SVIGSLNGV	9	Unmodified	_SVIGSLNGV_					0	0	0		ENST00000531017.5_1_19:50314409-50316363:-|nuORF;nc|ENSG00000010361|Q9BT04-3|FUZ;nc|ENSG00000010361|Q9BT04-2|FUZ;ENSG00000010361|ENST00000313777|FUZ	ENST00000531017.5_1_19:50314409-50316363:-|nuORF	ENST00000531017.5_1_19:50314409-50316363:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	423.6396179199219	2	423.239993	844.465432	0.1097	4.6429E-05	-0.058356	-2.4699E-05	0.051344	2.1731E-05	423.23992070440676	78.53	0.45533	78.53	78.201	78.657	0					16	8	3	0	0	0	0.026268	1	28641	28641		78.149	12.914	1	8097700			51871	13162	37689	37993	50677	50677					0.03697809489085557
SVIGSLNGV	9	Unmodified	_SVIGSLNGV_					0	0	0		ENST00000531017.5_1_19:50314409-50316363:-|nuORF;nc|ENSG00000010361|Q9BT04-3|FUZ;nc|ENSG00000010361|Q9BT04-2|FUZ;ENSG00000010361|ENST00000313777|FUZ	ENST00000531017.5_1_19:50314409-50316363:-|nuORF	ENST00000531017.5_1_19:50314409-50316363:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	845.4907836914062	1	845.472709	844.465432	-0.17122	-0.00014476	-0.20428	-0.00017272	-0.3755	-0.00031748	845.4724970522576	78.526	0.86058	78.526	78.15	79.011	0					35	16	3	0	0	0	0.0037351	2	28747	28747;28809		137.42	55.534	1	41345000			51872	13162	37689	37993	50678;50679	50678					0.03697809489085557
SVIGSLNGV	9	Unmodified	_SVIGSLNGV_					0	0	0		ENST00000531017.5_1_19:50314409-50316363:-|nuORF;nc|ENSG00000010361|Q9BT04-3|FUZ;nc|ENSG00000010361|Q9BT04-2|FUZ;ENSG00000010361|ENST00000313777|FUZ	ENST00000531017.5_1_19:50314409-50316363:-|nuORF	ENST00000531017.5_1_19:50314409-50316363:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	845.472709	844.465432	-0.70601	-0.00059691	0.18889	0.0001597	-0.51712	-0.00043721	845.472806375105	77.648	0.81604	78.391	78.062	78.878	0.74293	-0.067849	0.00016545	NaN	137.42	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36587000			51873	13162	37689	37993							0.03697809489085557
SVIGSVHTW	9	Unmodified	_SVIGSVHTW_					0	0	0		ENST00000469694.5_1_2:241404001-241405704:+|nuORF;ENSG00000063660|ENST00000264039|GPC1	ENST00000469694.5_1_2:241404001-241405704:+|nuORF	ENST00000469694.5_1_2:241404001-241405704:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	493.6588134765625	2	493.258717	984.50288	-0.37496	-0.00018495	0.21224	0.00010469	-0.16272	-8.0265E-05	493.2587936144659	60.912	0.66123	60.912	60.618	61.279	0					26	12	3	0	0	0	0.0090669	1	21903	21903		100.37	62.397	1	11519000			51874	1343	37690	37994	50680	50680					0.010009007546955218
SVIGSVHTW	9	Unmodified	_SVIGSVHTW_					0	0	0		ENST00000469694.5_1_2:241404001-241405704:+|nuORF;ENSG00000063660|ENST00000264039|GPC1	ENST00000469694.5_1_2:241404001-241405704:+|nuORF	ENST00000469694.5_1_2:241404001-241405704:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	493.65838623046875	2	493.258717	984.50288	-0.84438	-0.0004165	0.18055	8.9059E-05	-0.66383	-0.00032744	493.25878019383384	60.031	0.55779	60.778	60.45	61.008	0.74714					24	10	3	0	0	0	0.0090669	2	22684	22684;22724		100.37	62.397	1	11223000			51875	1343	37690	37994	50681;50682	50681					0.010009007546955218
SVIGTEFYV	9	Unmodified	_SVIGTEFYV_					0	0	0		ENST00000469042.5_1_3:132298334-132378619:-|nuORF;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11;ENST00000471702.2_2_3:132339980-132400782:-|nuORF	ENST00000469042.5_1_3:132298334-132378619:-|nuORF	ENST00000469042.5_1_3:132298334-132378619:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1014.914306640625	1	1014.51424	1013.50696	0.16791	0.00017035	0.0011589	1.1757E-06	0.16907	0.00017152	1014.5138969155407	109.98	0.56229	110.73	110.43	110.99	0.744					23	10	3	0	0	0	0.012104	1	41460	41460		92.491	36.314	1	5806600			51876	9772	37691	37995	50683	50683					0.0007494545775443839
SVIGTEFYV	9	Unmodified	_SVIGTEFYV_					0	0	0		ENST00000469042.5_1_3:132298334-132378619:-|nuORF;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11;ENST00000471702.2_2_3:132339980-132400782:-|nuORF	ENST00000469042.5_1_3:132298334-132378619:-|nuORF	ENST00000469042.5_1_3:132298334-132378619:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	1014.51424	1013.50696	0.32443	0.00032914	0.073952	7.5025E-05	0.39838	0.00040416	1014.5142926189319	110.77	0.66519	110.77	110.49	111.16	0	0.019825	2.0012E-05	NaN	92.491	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5120600			51877	9772	37691	37995							0.0007494545775443839
SVIIDEIGR	9	Unmodified	_SVIIDEIGR_					0	0	0			REV__nc|ENSG00000101343|Q9BZJ0-3|CRNKL1	REV__nc|ENSG00000101343|Q9BZJ0-3|CRNKL1	MULTI-SECPEP	A375_MHC_IP_R1	1	501.6839904785156	2	501.284931	1000.55531	-0.32195	-0.00016139	-1.319	-0.0006612	-1.641	-0.00082259	501.2846824396428	57.124	0.56018	57.124	56.804	57.364	0					18	10	3	0	0	0	0.46045	1	20484	20484		36.127	8.4982	1	2137300	+		51878	27149	37692	37996	50684	50684					0.05505439097669296
SVIIEETKKY	10	Unmodified	_SVIIEETKKY_					0	0	0		nc|ENSG00000007062|O43490-5|PROM1;nc|ENSG00000007062|O43490-3|PROM1;nc|ENSG00000007062|O43490-4|PROM1;nc|ENSG00000007062|O43490-6|PROM1;nc|ENSG00000007062|O43490-7|PROM1;nc|ENSG00000007062|O43490-2|PROM1;ENSG00000007062|ENST00000447510|PROM1	nc|ENSG00000007062|O43490-5|PROM1	nc|ENSG00000007062|O43490-5|PROM1	MULTI-MSMS	A375_MHC_IP_R1	1	403.9270324707031	3	403.895695	1208.66525	-0.14841	-5.9942E-05	0.54409	0.00021976	0.39568	0.00015981	403.8959179590952	22.814	0.50217	22.814	22.572	23.074	0					17	9	2	0	0	0	0.71361	1	6170	6170		3.3196	0.68841	1	3733800			51879	934	37693	37997	50685	50685					0.06926819646196236
SVIISIPVGL	10	Unmodified	_SVIISIPVGL_					0	0	0			REV__ENSG00000181004|ENST00000314218|BBS12	REV__ENSG00000181004|ENST00000314218|BBS12	MULTI-SECPEP	A375_MHC_IP_R2	2	499.7178955078125	2	499.318243	996.621933	-0.42589	-0.00021266	-0.16633	-8.3052E-05	-0.59222	-0.00029571	499.31810285349	86.979	0.60841	87.713	87.306	87.914	0.733					24	11	3	0	0	0	0.69172	1	33103	33103		19.257	0	1	1885500	+		51880	21631	37694	37998	50686	50686					0.12348674659574499
SVIPARIIHNW	11	Unmodified	_SVIPARIIHNW_					0	0	0		ENST00000582201.5_1_17:62781409-62811241:-|nuORF;ENSG00000225190|ENST00000430334|PLEKHM1	ENST00000582201.5_1_17:62781409-62811241:-|nuORF;ENSG00000225190|ENST00000430334|PLEKHM1	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	436.3189697265625	3	435.919056	1304.73534	0.040088	1.7475E-05	0.16319	7.1138E-05	0.20328	8.8613E-05	435.91910948359236	72.115	0.60738	72.115	71.917	72.524	0					16	11	2	0	0	0	0.63149	1	26249	26249		20.871	11.627	1	2232000			51881	13689;9695	37695	37999	50687	50687					0.09516162825320862
SVIPARIIHNW	11	Unmodified	_SVIPARIIHNW_					0	0	0		ENST00000582201.5_1_17:62781409-62811241:-|nuORF;ENSG00000225190|ENST00000430334|PLEKHM1	ENST00000582201.5_1_17:62781409-62811241:-|nuORF;ENSG00000225190|ENST00000430334|PLEKHM1	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	436.3187561035156	3	435.919056	1304.73534	-0.4538	-0.00019782	-0.06313	-2.752E-05	-0.51693	-0.00022534	435.91898776648776	71.177	0.45536	71.912	71.656	72.111	0.7342					15	8	3	0	0	0	0.68072	1	27014	27014		17.049	8.0723	1	2964300			51882	13689;9695	37695	37999	50688	50688					0.09516162825320862
SVIPQAPQY	9	Unmodified	_SVIPQAPQY_					0	0	0		nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENSG00000101745|ENST00000262126|ANKRD12	nc|ENSG00000101745|Q6UB98-2|ANKRD12	nc|ENSG00000101745|Q6UB98-2|ANKRD12	MULTI-SECPEP	A375_MHC_IP_R2	2	501.1684875488281	2	501.766374	1001.5182	-0.64412	-0.0003232	4.061	0.0020377	3.4169	0.0017145	502.26892658268576	31.425	0.20503	32.143	31.974	32.18	0.71857					5	3	2	0	0	0	0.69504	1	11107	11107		18.135	3.5533	1	1164400			51883	2319	37696	38000	50689	50689					0.017497675518939104
SVITQVFHV	9	Unmodified	_SVITQVFHV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	A375_MHC_IP_R1	1	515.6898803710938	2	515.290017	1028.56548	-0.45081	-0.0002323	0.02191	1.129E-05	-0.4289	-0.00022101	515.289971880134	96.755	0.96345	96.755	96.325	97.288	0					48	18	4	0	0	0	0.022213	1	35505	35505		81.613	31.68	1	25053000			51884	3330	37697	38001	50690	50690					0.05234046822897653
SVITQVFHV	9	Unmodified	_SVITQVFHV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	A375_MHC_IP_R2	2	516.7191772460938	2	515.290017	1028.56548	-0.65692	-0.0003385	0.1202	6.194E-05	-0.53671	-0.00027656	515.290005930732	95.724	0.91525	96.475	96.093	97.008	0.75045					46	17	4	0	0	0	0.29981	1	36399	36399		30.637	15.798	1	28639000			51885	3330	37697	38001	50691	50691					0.05234046822897653
SVKEKILIF	9	Unmodified	_SVKEKILIF_					0	0	0			REV__tr|U7SQT6|U7SQT6_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01789PE=4SV=1	REV__tr|U7SQT6|U7SQT6_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01789PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	359.9619140625	3	359.561987	1075.66413	0.55432	0.00019931	-0.0090626	-3.2586E-06	0.54525	0.00019605	359.56179756928515	69.315	0.35722	69.315	69.07	69.427	0					15	6	3	0	0	0	0.80891	1	25181	25181		0.69767	0	1	1271400	+		51886	28384	37698	38002	50692	50692					0.12932650067932627
SVKEPEIRC	9	Unmodified	_SVKEPEIRC_					0	0	0		nc|ENSG00000116731|Q13029-5|PRDM2;nc|ENSG00000116731|Q13029-3|PRDM2;nc|ENSG00000116731|Q13029-2|PRDM2;ENSG00000116731|ENST00000311066|PRDM2	nc|ENSG00000116731|Q13029-5|PRDM2	nc|ENSG00000116731|Q13029-5|PRDM2	MSMS	A375_MHC_IP_R1	1	530.6763305664062	2	530.776416	1059.53828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.096	1	78.096	77.596	78.596	0								0	0	0	0.14767	1	28505	28505		25.399	4.9457	1				51887	3424	37699	38003	50693	50693					0.010891952201973254
SVKESDVYA	9	Unmodified	_SVKESDVYA_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	A375_MHC_IP_R2	2	499.1517333984375	2	499.245472	996.476391	-0.53221	-0.0002657	-0.0111	-5.5416E-06	-0.54331	-0.00027125	499.24524554294976	67.453	0.40851	68.189	68.001	68.41	0.73631					11	7	2	0	0	0	0.63811	1	25501	25501		12.532	1.4171	1	845170	+		51888	19778	37700	38004	50694	50694					-0.021988329272971896
SVKKKFPRS	9	Unmodified	_SVKKKFPRS_					0	0	0			REV__ENST00000380834.6_1_2:25042774-25043173:+|nuORF	REV__ENST00000380834.6_1_2:25042774-25043173:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	359.95330810546875	3	359.557348	1075.65021	0.091199	3.2791E-05	-0.23527	-8.4593E-05	-0.14407	-5.1802E-05	359.55721098414693	55.133	0.40557	55.133	54.975	55.381	0					13	7	2	0	0	0	0.70886	1	19674	19674		3.8763	1.1411	1	1588200	+		51889	24224	37701	38005	50695	50695					0.11541417359512707
SVKKLVQNEKH	11	Unmodified	_SVKKLVQNEKH_					0	0	0			REV__ENST00000609928.5_3_1:179821820-179834609:-|nuORF	REV__ENST00000609928.5_3_1:179821820-179834609:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	655.7825317382812	2	655.382968	1308.75138	-0.66719	-0.00043727	-0.77412	-0.00050734	-1.4413	-0.00094461	655.3823207985512	142.07	1.9906	142.1	140.9	142.89	0.030731					54	38	2	0	0	0	0.7362	1	55273	55273		2.9952	1.8019	1	1488900	+		51890	26573	37702	38006	50696	50696					0.10935824271518868
SVKKLVQNEKH	11	Unmodified	_SVKKLVQNEKH_					0	0	0			REV__ENST00000609928.5_3_1:179821820-179834609:-|nuORF	REV__ENST00000609928.5_3_1:179821820-179834609:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	655.7825927734375	2	655.382968	1308.75138	-0.66665	-0.00043691	-0.478	-0.00031328	-1.1447	-0.00075018	655.3824663271296	143.84	0.63614	143.87	143.54	144.17	0.024414					15	12	2	0	0	0	0.73809	1	56231	56231		1.1933	0	1	515840	+		51891	26573	37702	38006	50697	50697					0.10935824271518868
SVKRGFEF	8	Unmodified	_SVKRGFEF_					0	0	0		ENSG00000122545|ENST00000350320|SEPTIN7;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENST00000475109.5_1_7:35840829-35903188:+|nuORF	ENSG00000122545|ENST00000350320|SEPTIN7	ENSG00000122545|ENST00000350320|SEPTIN7	MULTI-SECPEP	A375_MHC_IP_R1	1	485.66107177734375	2	485.261259	968.507966	-0.20103	-9.7554E-05	-0.40753	-0.00019776	-0.60857	-0.00029531	485.2611232425325	34.942	0.71217	34.942	34.81	35.522	0					16	13	2	0	0	0	0.88903	1	11649	11649		18.146	0	1	2909700			51892	3789	37703	38007	50698	50698					0.0224520461732709
SVKRGFEF	8	Unmodified	_SVKRGFEF_					0	0	0		ENSG00000122545|ENST00000350320|SEPTIN7;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENST00000475109.5_1_7:35840829-35903188:+|nuORF	ENSG00000122545|ENST00000350320|SEPTIN7	ENSG00000122545|ENST00000350320|SEPTIN7	MULTI-SECPEP	A375_MHC_IP_R2	2	485.66094970703125	2	485.261259	968.507966	-1.0382	-0.00050382	-0.085807	-4.1639E-05	-1.124	-0.00054546	485.26117802191413	34.025	0.50529	34.778	34.399	34.904	0.75225					14	9	3	0	0	0	0.89344	1	12249	12249		31.268	8.1199	1	4271900			51893	3789	37703	38007	50699	50699					0.0224520461732709
SVLDQKILL	9	Unmodified	_SVLDQKILL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	A375_MHC_IP_R1	1	515.2212524414062	2	514.82115	1027.62775	-0.41809	-0.00021524	-0.068751	-3.5394E-05	-0.48684	-0.00025064	514.8210479779552	92.06	0.86121	92.06	91.756	92.617	0					33	16	3	0	0	0	0.011031	1	33788	33788		128.93	40.029	1	13105000			51894	5295	37704	38008	50700	50700					0.11503773171239118
SVLDQKILL	9	Unmodified	_SVLDQKILL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	A375_MHC_IP_R2	2	515.2211303710938	2	514.82115	1027.62775	-0.66541	-0.00034257	0.40839	0.00021025	-0.25702	-0.00013232	514.82128837068	91.195	0.86185	91.93	91.616	92.478	0.7345					42	16	4	0	0	0	0.011357	1	34648	34648		125.53	60.294	1	13912000			51895	5295	37704	38008	50701	50701					0.11503773171239118
SVLEALSGV	9	Unmodified	_SVLEALSGV_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1;nc|ENSG00000183486|P20592-2|MX2;ENSG00000183486|ENST00000330714|MX2	ENSG00000157601|ENST00000398598|MX1;ENSG00000183486|ENST00000330714|MX2	ENSG00000183486|ENST00000330714|MX2	MULTI-SECPEP	A375_MHC_IP_R1	1	874.9243774414062	1	874.488024	873.480748	-0.045023	-3.9372E-05	-0.089466	-7.8237E-05	-0.13449	-0.00011761	874.487929056855	109.11	0.76266	109.11	108.86	109.63	0					25	14	3	0	0	0	0.55359	1	39938	39938		28.487	12.64	1	8120400			51896	8498;6255	37705	38009	50702	50702					0.03894676286279264
SVLEALSGV	9	Unmodified	_SVLEALSGV_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1;nc|ENSG00000183486|P20592-2|MX2;ENSG00000183486|ENST00000330714|MX2	ENSG00000157601|ENST00000398598|MX1;ENSG00000183486|ENST00000330714|MX2	ENSG00000183486|ENST00000330714|MX2	MULTI-SECPEP	A375_MHC_IP_R2	2	874.5502319335938	1	874.488024	873.480748	-0.54545	-0.00047699	0.2118	0.00018522	-0.33365	-0.00029177	874.4881733243952	108.24	0.76564	108.99	108.66	109.43	0.75436					26	14	3	0	0	0	0.11436	1	40797	40797		68.081	10.609	1	7196400			51897	8498;6255	37705	38009	50703	50703					0.03894676286279264
SVLEKQVSL	9	Unmodified	_SVLEKQVSL_					0	0	0		ENST00000432815.2_1_1:173332252-173332432:-|nuORF;ENST00000541768.1_1_11:95546181-95551118:+|nuORF;nc|ENSG00000166037|Q86XR8-3|CEP57;ENST00000539855.5_1_11:95532492-95564417:+|nuORF;nc|ENSG00000166037|Q86XR8-2|CEP57;nc|ENSG00000166037|Q86XR8-4|CEP57;nc|ENSG00000166037|Q86XR8-5|CEP57;ENSG00000166037|ENST00000325542|CEP57	ENST00000432815.2_1_1:173332252-173332432:-|nuORF	ENST00000432815.2_1_1:173332252-173332432:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.1949157714844	2	501.795132	1001.57571	-0.28964	-0.00014534	0.17152	8.607E-05	-0.11811	-5.9268E-05	501.79510966544086	52.088	0.61063	52.088	51.676	52.287	0					19	11	3	0	0	0	0.16237	1	18518	18518		63.227	21.388	1	2635100			51898	11885	37706	38010	50704	50704					0.07498609757476515
SVLEPIKSV	9	Unmodified	_SVLEPIKSV_					0	0	0		nc|ENSG00000075292|Q14966-2|ZNF638;nc|ENSG00000075292|Q14966-6|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638	nc|ENSG00000075292|Q14966-2|ZNF638	nc|ENSG00000075292|Q14966-2|ZNF638	MULTI-MSMS	A375_MHC_IP_R1	1	486.6917724609375	2	486.292225	970.569897	-0.31434	-0.00015286	-0.43297	-0.00021055	-0.74731	-0.00036341	486.29214050158066	58.525	0.66086	58.525	58.278	58.938	0					16	12	2	0	0	0	0.29123	1	21053	21053		31.268	4.3847	1	1452500			51899	1606	37707	38011	50705	50705					0.08343511245811897
SVLEPIKSV	9	Unmodified	_SVLEPIKSV_					0	0	0		nc|ENSG00000075292|Q14966-2|ZNF638;nc|ENSG00000075292|Q14966-6|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638	nc|ENSG00000075292|Q14966-2|ZNF638	nc|ENSG00000075292|Q14966-2|ZNF638	MULTI-SECPEP	A375_MHC_IP_R2	2	486.6919860839844	2	486.292225	970.569897	-0.91753	-0.00044619	0.20323	9.8831E-05	-0.71429	-0.00034735	486.2923137967344	57.665	0.40771	58.414	58.12	58.528	0.74894					12	7	2	0	0	0	0.63622	1	21817	21817		24.991	12.75	1	1896300			51900	1606	37707	38011	50706	50706					0.08343511245811897
SVLEPVISV	9	Unmodified	_SVLEPVISV_					0	0	0		nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	MULTI-MSMS	A375_MHC_IP_R1	1	943.4434204101562	1	942.550625	941.543348	0.18278	0.00017228	-0.31565	-0.00029752	-0.13287	-0.00012524	942.5501694709912	110.06	0.40628	110.06	109.83	110.24	0					13	7	2	0	0	0	0.14922	1	40323	40323		41.84	14.956	1	3016300			51901	1607	37708	38012	50707	50707					0.07023822354472031
SVLEPVISV	9	Unmodified	_SVLEPVISV_					0	0	0		nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	MULTI-SECPEP	A375_MHC_IP_R2	2	472.1786193847656	2	471.778951	941.543348	-0.49373	-0.00023293	0.43793	0.0002066	-0.055806	-2.6328E-05	471.7788780007747	109.26	0.50617	110.01	109.78	110.28	0.74684					13	9	2	0	0	0	0.14422	1	41249	41249		61.357	7.7819	1	1664200			51902	1607	37708	38012	50708	50708					0.07023822354472031
SVLEPVISV	9	Unmodified	_SVLEPVISV_					0	0	0		nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	MULTI-MATCH	A375_MHC_IP_R1	1		2	471.778951	941.543348	-0.23313	-0.00010999	0.46801	0.0002208	0.23487	0.00011081	471.7789816888009	110.18	0.50735	110.18	109.88	110.39	0	0.085344	1.6363E-05	NaN	61.357	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	972100			51903	1607	37708	38012							0.07023822354472031
SVLEPVISV	9	Unmodified	_SVLEPVISV_					0	0	0		nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	MULTI-MATCH	A375_MHC_IP_R2	2		1	942.550625	941.543348	-0.11822	-0.00011142	-0.22037	-0.00020771	-0.33859	-0.00031914	942.5502901016713	109.25	0.40572	109.99	109.78	110.18	0.74684	-0.033887	6.132E-05	NaN	41.84	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2324400			51904	1607	37708	38012							0.07023822354472031
SVLEQIAAYG	10	Unmodified	_SVLEQIAAYG_					0	0	0		TUBGCP5|p.F375Lfs*19|1|0.39|ENSG00000275835|chr15:23023990-23023990|G/-|frameshift_variant;nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5	TUBGCP5|p.F375Lfs*19|1|0.39|ENSG00000275835|chr15:23023990-23023990|G/-|frameshift_variant	TUBGCP5|p.F375Lfs*19|1|0.39|ENSG00000275835|chr15:23023990-23023990|G/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	525.69873046875	2	525.776939	1049.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.73	1	116.73	116.23	117.23	0								0	0	0	0.13064	1	42825	42825		34.402	9.0024	1				51905	10014	37709	38013	50709	50709					0.016537328607682866
SVLFPEPLTW	10	Unmodified	_SVLFPEPLTW_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-SECPEP	A375_MHC_IP_R1	1	595.2186279296875	2	594.818607	1187.62266	-0.63773	-0.00037933	0.67816	0.00040338	0.040428	2.4047E-05	594.8189082602617	133.07	0.20422	133.07	132.95	133.15	0					8	3	3	0	0	0	0.12137	1	51324	51324		78.728	53.737	1	5545800			51906	5163	37710	38014	50710	50710					0.03635469308596839
SVLFPEPLTW	10	Unmodified	_SVLFPEPLTW_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-SECPEP	A375_MHC_IP_R2	2	595.21826171875	2	594.818607	1187.62266	-0.50541	-0.00030062	0.1408	8.3749E-05	-0.36461	-0.00021688	594.8188549530818	132.9	0.20358	133.07	132.94	133.15	0.16487					9	3	3	0	0	0	0.027341	1	52292	52292		103.35	68.421	1	8464100			51907	5163	37710	38014	50711	50711					0.03635469308596839
SVLGAITSV	9	Unmodified	_SVLGAITSV_					0	0	0		ENSG00000120705|ENST00000360541|ETF1;nc|ENSG00000120705|P62495-2|ETF1	ENSG00000120705|ENST00000360541|ETF1	ENSG00000120705|ENST00000360541|ETF1	MULTI-MSMS	A375_MHC_IP_R1	1	846.892822265625	1	846.49311	845.485833	-0.28417	-0.00024055	-0.11305	-9.5697E-05	-0.39722	-0.00033624	846.4929568340448	101.01	1.6198	101.01	100.48	102.1	0					66	31	4	0	0	0	0.0094788	1	37359	37359		107.19	21.915	1	63254000			51908	3680	37711	38015	50712	50712					0.05690980148892777
SVLGAITSV	9	Unmodified	_SVLGAITSV_					0	0	0		ENSG00000120705|ENST00000360541|ETF1;nc|ENSG00000120705|P62495-2|ETF1	ENSG00000120705|ENST00000360541|ETF1	ENSG00000120705|ENST00000360541|ETF1	MULTI-MATCH	A375_MHC_IP_R2	2		1	846.49311	845.485833	-0.46928	-0.00039724	0.0056422	4.7761E-06	-0.46364	-0.00039247	846.4930326872131	100.09	1.5305	100.85	100.32	101.85	0.76278	-0.080539	4.5764E-05	NaN	107.19	65	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75384000			51909	3680	37711	38015							0.05690980148892777
SVLGKIWKL	9	Unmodified	_SVLGKIWKL_					0	0	0		ENSG00000013016|ENST00000322054|EHD3;ENSG00000103966|ENST00000220325|EHD4	ENSG00000013016|ENST00000322054|EHD3;ENSG00000103966|ENST00000220325|EHD4	ENSG00000013016|ENST00000322054|EHD3	MULTI-SECPEP	A375_MHC_IP_R1	1	522.7333374023438	2	522.334227	1042.6539	-0.37035	-0.00019345	-0.58628	-0.00030623	-0.95663	-0.00049968	522.3340527474456	82.667	0.60777	82.667	82.316	82.924	0					21	11	3	0	0	0	0.5212	1	30250	30250		26.268	14.628	1	2321200			51910	1015;2475	37712	38016	50713	50713					0.13428087133365807
SVLGKPELWS	10	Unmodified	_SVLGKPELWS_					0	0	0		nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC	nc|ENSG00000290691|A6NGW2|STRCP1	nc|ENSG00000290691|A6NGW2|STRCP1	MSMS	A375_MHC_IP_R2	2	372.5709533691406	3	372.541363	1114.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.594	1	39.368	38.868	39.868	0.77451								0	0	0	0.15306	1	14216	14216		10.899	0.58372	1				51911	9804	37713	38017	50714	50714					0.04954298648794975
SVLGKVNEI	9	Unmodified	_SVLGKVNEI_					0	0	0		ENSG00000175203|ENST00000548249|DCTN2;nc|ENSG00000175203|Q13561-3|DCTN2;nc|ENSG00000175203|Q13561-2|DCTN2;ENST00000550988.5_1_12:57926276-57926769:-|nuORF	ENSG00000175203|ENST00000548249|DCTN2	ENSG00000175203|ENST00000548249|DCTN2	MULTI-SECPEP	A375_MHC_IP_R1	1	480.1820983886719	2	479.782025	957.549496	-0.59083	-0.00028347	0.38684	0.0001856	-0.20399	-9.7873E-05	479.7821237368863	52.826	0.50714	52.826	52.541	53.048	0					18	9	3	0	0	0	0.11849	1	18803	18803		70.332	39.695	1	3997900			51912	7939	37714	38018	50715	50715					0.06902340585986622
SVLGKVNEI	9	Unmodified	_SVLGKVNEI_					0	0	0		ENSG00000175203|ENST00000548249|DCTN2;nc|ENSG00000175203|Q13561-3|DCTN2;nc|ENSG00000175203|Q13561-2|DCTN2;ENST00000550988.5_1_12:57926276-57926769:-|nuORF	ENSG00000175203|ENST00000548249|DCTN2	ENSG00000175203|ENST00000548249|DCTN2	MULTI-MSMS	A375_MHC_IP_R2	2	480.1820068359375	2	479.782025	957.549496	-0.8798	-0.00042211	-0.0046193	-2.2162E-06	-0.88442	-0.00042433	479.78191615368814	51.967	0.40844	52.719	52.524	52.932	0.75225					17	7	3	0	0	0	0.017012	1	19562	19562		87.258	21.785	1	3708300			51913	7939	37714	38018	50716	50716					0.06902340585986622
SVLGVITIV	9	Unmodified	_SVLGVITIV_					0	0	0		ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	MULTI-SECPEP	A375_MHC_IP_R2	2	900.9747924804688	1	900.576445	899.569169	-0.46513	-0.00041889	-0.20848	-0.00018775	-0.67361	-0.00060664	900.5760543498992	129.4	0.45334	129.64	129.52	129.97	0.23946					10	8	2	0	0	0	0.1277	1	50897	50897		54.774	3.9185	1	18596000			51914	6160	37715	38019	50717	50717					0.11536716596754104
SVLHQNRAKW	10	Unmodified	_SVLHQNRAKW_					0	0	0			REV__ENSG00000047410|ENST00000367478|TPR	REV__ENSG00000047410|ENST00000367478|TPR	MULTI-SECPEP	A375_MHC_IP_R1	1	414.1609191894531	3	413.563273	1237.66799	0.78186	0.00032335	-4.2704	-0.0017661	-3.4885	-0.0014427	413.5620126822456	49.021	0.30212	49.021	48.933	49.235	0					6	5	2	0	0	0	0.93578	1	17345	17345		8.9762	0	1	649400	+		51915	16360	37716	38020	50718	50718					0.058661326143464976
SVLKLLIKIK	10	Unmodified	_SVLKLLIKIK_					0	0	0			REV__tr|U7SUL0|U7SUL0_FUSNUBacterialtranscriptionalactivatordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01209PE=4SV=1	REV__tr|U7SUL0|U7SUL0_FUSNUBacterialtranscriptionalactivatordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01209PE=4SV=1	MSMS	A375_MHC_IP_R1	1	385.6136779785156	3	385.612682	1153.81622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.46	1	25.46	24.96	25.96	0								0	0	0	0.15638	1	7431	7431		0.12286	0.014929	1		+		51916	28564	37717	38021	50719	50719					0.24546050815501985
SVLKSIQEV	9	Unmodified	_SVLKSIQEV_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	A375_MHC_IP_R1	1	502.19488525390625	2	501.795132	1001.57571	-0.2828	-0.00014191	-0.030434	-1.5272E-05	-0.31324	-0.00015718	501.7950842423774	54.541	1.2174	54.541	54.163	55.381	0					40	23	3	0	0	0	0.0020207	1	19442	19442		155.95	66.553	1	21539000			51917	1156	37718	38022	50720	50720					0.07498609757476515
SVLKSLVEI	9	Unmodified	_SVLKSLVEI_					0	0	0		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;IPO5|p.D233V|1|0.56|ENSG00000065150|chr13:97992920-97992920|A/T|missense_variant	nc|ENSG00000065150|O00410-2|IPO5	nc|ENSG00000065150|O00410-2|IPO5	MULTI-SECPEP	A375_MHC_IP_R1	1	494.21600341796875	2	494.307875	986.601197	-0.53358	-0.00026375	0.29282	0.00014474	-0.24076	-0.00011901	494.30811392542	90.343	0.30428	90.343	90.133	90.437	0					8	5	2	0	0	0	0.36673	1	33210	33210		45.74	11.338	1	693650			51918	1370	37719	38023	50721	50721					0.10736084279915303
SVLKSLVEI	9	Unmodified	_SVLKSLVEI_					0	0	0		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;IPO5|p.D233V|1|0.56|ENSG00000065150|chr13:97992920-97992920|A/T|missense_variant	nc|ENSG00000065150|O00410-2|IPO5	nc|ENSG00000065150|O00410-2|IPO5	MULTI-SECPEP	A375_MHC_IP_R2	2	494.2155456542969	2	494.307875	986.601197	-0.40479	-0.00020009	-0.47986	-0.0002372	-0.88465	-0.00043729	494.3075636990532	89.367	0.35045	90.099	89.886	90.236	0.7318					9	6	2	0	0	0	0.11849	1	34003	34003		70.332	18.702	1	596310			51919	1370	37719	38023	50722	50722					0.10736084279915303
SVLLKNGV	8	Unmodified	_SVLLKNGV_					0	0	0			REV__ENSG00000113716|ENST00000502717|HMGXB3	REV__ENSG00000113716|ENST00000502717|HMGXB3	MULTI-MSMS	A375_MHC_IP_R2	2	415.660400390625	2	415.260728	828.506903	-0.41622	-0.00017284	-0.21422	-8.8959E-05	-0.63044	-0.0002618	415.2605672546757	56.581	0.40943	57.331	57.152	57.561	0.75015					10	7	2	0	0	0	0.76654	1	21425	21425		15.847	0	1	1733900	+		51920	17798	37720	38024	50723	50723					0.08578990248417995
SVLNRPLL	8	Unmodified	_SVLNRPLL_					0	0	0		ENST00000361740.8_1_22:43014893-43015193:-|nuORF	ENST00000361740.8_1_22:43014893-43015193:-|nuORF	ENST00000361740.8_1_22:43014893-43015193:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	456.14208984375	2	456.287277	910.560001	-0.54814	-0.00025011	-0.063947	-2.9178E-05	-0.61208	-0.00027929	456.28719843528773	61.803	1.0104	62.546	62.17	63.18	0.74263					46	19	3	0	0	0	0.64068	1	23430	23430		49.669	9.2203	1	15579000			51921	11049	37721	38025	50724	50724					0.10114368031076992
SVLQKDHY	8	Unmodified	_SVLQKDHY_					0	0	0		ENSG00000162601|ENST00000472487|MYSM1;ENST00000489282.1_1_1:59158492-59165724:-|nuORF;ENST00000466774.5_1_1:59150886-59165724:-|nuORF	ENSG00000162601|ENST00000472487|MYSM1	ENSG00000162601|ENST00000472487|MYSM1	MULTI-SECPEP	A375_MHC_IP_R2	2	495.65557861328125	2	495.256174	988.497795	-0.81488	-0.00040358	-0.71197	-0.00035261	-1.5269	-0.00075618	495.2556176602316	60.047	0.45541	60.794	60.501	60.957	0.74714					15	8	3	0	0	0	0.8957	1	22729	22729		21.747	3.6117	1	2188200			51922	6557	37722	38026	50725	50725					0.0030859689209137287
SVLSARYAAL	10	Unmodified	_SVLSARYAAL_					0	0	0			REV__nc|ENSG00000124191|Q96NM4-3|TOX2	REV__nc|ENSG00000124191|Q96NM4-3|TOX2	MULTI-SECPEP	A375_MHC_IP_R1	1	526.2003784179688	2	525.800749	1049.58694	-0.46961	-0.00024692	-0.72042	-0.0003788	-1.19	-0.00062572	525.8005274900185	60.198	0.30574	60.198	60.006	60.312	0					8	5	2	0	0	0	0.74754	1	21711	21711		12.241	4.0851	1	1377000	+		51923	17276	37723	38027	50726	50726					0.06413431851615314
SVLSYHSSF	9	Unmodified	_SVLSYHSSF_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35;ARHGAP35|p.E834D|1|0.38|ENSG00000160007|chr19:46921177-46921177|A/T|missense_variant	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-SECPEP	A375_MHC_IP_R2	2	513.615966796875	2	513.748182	1025.48181	-1.0272	-0.00052772	0.37694	0.00019365	-0.65026	-0.00033407	513.7481591800284	49.363	0.76138	50.12	49.944	50.706	0.75737					20	14	2	0	0	0	0.65246	1	18657	18657		10.824	4.6181	1	1417700			51924	6391	37724	38028	50727	50727					-0.02991109344816323
SVLTNFGNKY	10	Unmodified	_SVLTNFGNKY_					0	0	0			REV__ENSG00000104237|ENST00000220676|RP1	REV__ENSG00000104237|ENST00000220676|RP1	MULTI-SECPEP	A375_MHC_IP_R2	2	572.1959228515625	2	571.795663	1141.57677	-0.28517	-0.00016306	-0.1042	-5.9579E-05	-0.38937	-0.00022264	571.7956917653017	41.819	0.358	42.594	42.401	42.759	0.77451					13	6	3	0	0	0	0.86608	1	15568	15568		32.786	24.04	1	2242600	+		51925	17310	37725	38029	50728	50728					0.011648241263856107
SVLTNFGNKY	10	Unmodified	_SVLTNFGNKY_					0	0	0			REV__ENSG00000104237|ENST00000220676|RP1	REV__ENSG00000104237|ENST00000220676|RP1	MULTI-MATCH	A375_MHC_IP_R1	1		2	571.795663	1141.57677	-0.092808	-5.3067E-05	-0.18535	-0.00010598	-0.27815	-0.00015905	571.7957192807171	42.587	0.55641	42.587	42.436	42.993	0	-0.0034021	-3.3873E-05	NaN	32.786	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1388200	+		51926	17310	37725	38029							0.011648241263856107
SVLVSPPAV	9	Unmodified	_SVLVSPPAV_					0	0	0		nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	MULTI-MSMS	A375_MHC_IP_R2	2	435.1601867675781	2	434.760561	867.506569	-0.25137	-0.00010928	-0.29985	-0.00013036	-0.55121	-0.00023965	434.76044470278305	83.032	0.65588	83.771	83.444	84.099	0.73962					17	12	2	0	0	0	0.0094266	1	31588	31588		97.075	46.22	1	1497100			51927	6124	37726	38030	50729	50729					0.06751570528570028
SVLVSPPAV	9	Unmodified	_SVLVSPPAV_					0	0	0		nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	MULTI-MATCH	A375_MHC_IP_R1	1		2	434.760561	867.506569	-0.27322	-0.00011879	0.142	6.1736E-05	-0.13122	-5.705E-05	434.76050118119224	83.861	0.60777	83.861	83.583	84.191	0	0.045015	0.00027446	NaN	97.075	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1208300			51928	6124	37726	38030							0.06751570528570028
SVMGNIIHV	9	Unmodified	_SVMGNIIHV_					0	0	0		ENSG00000139718|ENST00000604567|SETD1B;nc|ENSG00000139718|Q9UPS6-2|SETD1B	ENSG00000139718|ENST00000604567|SETD1B	ENSG00000139718|ENST00000604567|SETD1B	MULTI-SECPEP	A375_MHC_IP_R1	1	485.6629943847656	2	485.262945	968.511337	-0.22403	-0.00010872	0.17976	8.7232E-05	-0.044272	-2.1484E-05	485.2631173086152	79.629	0.61682	79.629	79.161	79.778	0					15	11	2	0	0	0	0.62767	1	29113	29113		16.942	8.349	1	1406000			51929	5104	37727	38031	50730	50730					0.025821313996971185
SVMGNIIHV	9	Unmodified	_SVMGNIIHV_					0	0	0		ENSG00000139718|ENST00000604567|SETD1B;nc|ENSG00000139718|Q9UPS6-2|SETD1B	ENSG00000139718|ENST00000604567|SETD1B	ENSG00000139718|ENST00000604567|SETD1B	MULTI-SECPEP	A375_MHC_IP_R2	2	485.8700256347656	2	485.262945	968.511337	-0.54005	-0.00026207	0.32138	0.00015595	-0.21868	-0.00010612	485.2629802065714	78.648	0.40568	79.392	79.185	79.591	0.74474					14	7	2	0	0	0	0.55359	1	29908	29908		21.747	9.2151	1	1640400			51930	5104	37727	38031	50731	50731					0.025821313996971185
SVMQRSPYSY	10	Unmodified	_SVMQRSPYSY_					0	0	0			REV__nc|ENSG00000130164|P01130-6|LDLR	REV__nc|ENSG00000130164|P01130-6|LDLR	MULTI-SECPEP	A375_MHC_IP_R1	1	609.2091674804688	2	609.284605	1216.55466	-0.20733	-0.00012633	-1.8799	-0.0011454	-2.0873	-0.0012717	609.2833320650634	51.296	0.65972	51.296	51.119	51.778	0					20	12	3	0	0	0	0.79457	1	18223	18223		26.268	9.1552	1	2256700	+		51931	18520	37728	38032	50732	50732					-0.044957236136951906
SVMQRSPYSY	10	Unmodified	_SVMQRSPYSY_					0	0	0			REV__nc|ENSG00000130164|P01130-6|LDLR	REV__nc|ENSG00000130164|P01130-6|LDLR	MULTI-MATCH	A375_MHC_IP_R2	2		2	609.284605	1216.55466	-0.5566	-0.00033913	-1.9137	-0.001166	-2.4703	-0.0015051	609.2829805793181	50.733	0.35337	51.488	51.361	51.715	0.75406	0.095632	-2.1286E-05	NaN	26.268	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2979200	+		51932	18520	37728	38032							-0.044957236136951906
SVNGNLEDY	9	Unmodified	_SVNGNLEDY_					0	0	0			REV__tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1	REV__tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	506.1688537597656	2	505.724904	1009.43525	-0.72499	-0.00036664	-0.29931	-0.00015137	-1.0243	-0.00051801	505.7247872521518	41.565	0.66563	41.565	41.266	41.932	0					18	12	2	0	0	0	0.69674	1	14419	14419		7.2892	0	1	3840700	+		51933	28392	37729	38033	50733	50733					-0.069085939667616
SVNLAGKW	8	Unmodified	_SVNLAGKW_					0	0	0			REV__ENSG00000077616|ENST00000534061|NAALAD2	REV__ENSG00000077616|ENST00000534061|NAALAD2	MSMS	A375_MHC_IP_R1	1	437.6634826660156	2	437.742702	873.470852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.1	1	76.1	75.6	76.6	0								0	0	0	0.16876	1	27734	27734		9.3474	2.0582	1		+		51934	16696	37730	38034	50734	50734					0.029055330715777927
SVPAVFAFGMN	11	Unmodified	_SVPAVFAFGMN_					0	0	0		TAAR1|p.I159N|1|0.51|ENSG00000146399|chr6:132645528-132645528|A/T|missense_variant	TAAR1|p.I159N|1|0.51|ENSG00000146399|chr6:132645528-132645528|A/T|missense_variant	TAAR1|p.I159N|1|0.51|ENSG00000146399|chr6:132645528-132645528|A/T|missense_variant	MSMS	A375_MHC_IP_R1	1	570.2813110351562	2	570.281334	1138.54812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.5	1	121.5	121	122	0								0	0	0	0.16213	1	45120	45120		7.609	0.31972	1				51935	29287	37731	38035	50735	50735					-0.0156161677439286
SVPDWARAQ	9	Unmodified	_SVPDWARAQ_					0	0	0			REV__ENST00000343938.8_1_1:1263308-1263773:+|nuORF	REV__ENST00000343938.8_1_1:1263308-1263773:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	515.1552734375	2	515.259248	1028.50394	-0.6698	-0.00034512	0.45542	0.00023466	-0.21437	-0.00011046	515.2575928806086	65.744	0.45786	65.744	65.514	65.972	0					14	8	3	0	0	0	0.58271	1	23831	23831		10.074	0	1	949930	+		51936	23755	37732	38036	50736	50736					-0.009168848763920323
SVPERQLS	8	Unmodified	_SVPERQLS_					0	0	0			REV__ENSG00000187833|ENST00000409561|C2orf78	REV__ENSG00000187833|ENST00000409561|C2orf78	MULTI-SECPEP	A375_MHC_IP_R1	1	457.6824035644531	2	458.248349	914.482145	-0.26544	-0.00012164	-1.0689	-0.00048983	-1.3344	-0.00061147	458.2486855084674	40.217	0.20417	40.217	40.1	40.304	0					7	3	3	0	0	0	0.972	1	13830	13830		8.5933	0	1	991070	+		51937	22052	37733	38037	50737	50737					0.021483103750597365
SVPETIKQGP	10	Unmodified	_SVPETIKQGP_					0	0	0			REV__FRG2C|p.E266K|1|0.1|ENSG00000172969|chr3:75665988-75665988|G/A|missense_variant	REV__FRG2C|p.E266K|1|0.1|ENSG00000172969|chr3:75665988-75665988|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	1055.8011474609375	1	1055.57315	1054.56587	0.1099	0.00011601	-0.91067	-0.00096128	-0.80078	-0.00084528	1055.571804173471	61.05	0.7633	61.05	60.464	61.227	0					19	14	2	0	0	0	0.93615	1	21814	21814		3.9444	0	1	2946000	+		51938	26648	37734	38038	50738	50738					0.04077421752117516
SVPGVRLL	8	Unmodified	_SVPGVRLL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R1	1	421.1689147949219	2	420.76872	839.522887	0.5687	0.00023929	-0.13971	-5.8786E-05	0.42899	0.0001805	420.7685962265611	69.401	0.81216	69.401	69.07	69.882	0					29	15	3	0	0	0	0.71451	1	25159	25159		30.225	5.5509	1	4619200			51939	1093	37735	38039	50739	50739					0.096706964853297
SVPGVRLL	8	Unmodified	_SVPGVRLL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R2	2	421.168701171875	2	420.76872	839.522887	0.011775	4.9545E-06	0.16167	6.8024E-05	0.17344	7.2978E-05	420.7687233438912	68.364	0.65867	69.099	68.765	69.423	0.73511					27	12	3	0	0	0	0.71451	1	25895	25895		30.225	5.5509	1	4787900			51940	1093	37735	38039	50740	50740					0.096706964853297
SVPHPHPSL	9	Unmodified	_SVPHPHPSL_					0	0	0			REV__ENST00000344629.11_1_3:9798246-9798938:+|nuORF	REV__ENST00000344629.11_1_3:9798246-9798938:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	486.1461486816406	2	485.758884	969.503215	-0.36905	-0.00017927	-1.1962	-0.00058109	-1.5653	-0.00076035	485.75794701346393	91.356	0.50627	91.356	91.048	91.554	0					12	9	2	0	0	0	0.69504	1	33617	33617		12.532	0.89125	1	968280	+		51941	23762	37736	38040	50741	50741					0.017243204745682306
SVPIFKQF	8	Unmodified	_SVPIFKQF_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000460826.1_1_2:242186148-242187441:-|nuORF;ENST00000488923.1_1_2:242186148-242186740:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6595764160156	2	483.276378	964.538203	-0.56984	-0.00027539	0.2998	0.00014489	-0.27004	-0.0001305	483.27644927970863	78.058	0.30515	78.801	78.624	78.929	0.74293					8	5	2	0	0	0	0.73563	1	29664	29664		36.044	11.37	1	2193200			51942	3330	37737	38041	50742	50742					0.054515632825200555
SVPKRASRY	9	Unmodified	_SVPKRASRY_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2;ENST00000463054.1_1_13:96529939-96547453:-|nuORF;UGGT2|p.D943N|1|0.08|ENSG00000102595|chr13:95894590-95894590|C/T|missense_variant	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-MSMS	A375_MHC_IP_R2	2	532.7041015625	2	532.30399	1062.59343	-0.5012	-0.00026679	0.15709	8.3618E-05	-0.34411	-0.00018317	532.303378430024	143.34	0.30464	143.36	143.13	143.44	0.024414					7	5	2	0	0	0	0.72985	1	56042	56042		4.3292	0	1	1718800			51943	2385	37738	38042	50743	50743					0.064633698030093
SVPLRMFRLWA	11	Unmodified	_SVPLRMFRLWA_					0	0	0		ENSG00000185000|ENST00000528718|DGAT1;ENST00000524965.5_1_8:145540219-145541001:-|nuORF	ENSG00000185000|ENST00000528718|DGAT1	ENSG00000185000|ENST00000528718|DGAT1	MULTI-MSMS	A375_MHC_IP_R2	2	459.65924072265625	3	459.260425	1374.75945	-0.3633	-0.00016685	-0.51376	-0.00023595	-0.87706	-0.0004028	459.25997221257967	131.37	1.1702	131.56	130.88	132.05	0.18954					62	22	3	0	0	0	0.73647	1	51498	51498		1.1098	0.096179	1	18827000			51944	8629	37739	38043	50744	50744					0.08705679987338044
SVPRILVVDW	10	Unmodified	_SVPRILVVDW_					0	0	0		ENST00000415993.5_1_22:50686492-50688322:-|nuORF	ENST00000415993.5_1_22:50686492-50688322:-|nuORF	ENST00000415993.5_1_22:50686492-50688322:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	592.2291259765625	2	592.345323	1182.67609	-0.75289	-0.00044597	3.4062	0.0020176	2.6533	0.0015717	592.3488955664563	71.159	0.35567	71.893	71.706	72.061	0.73421					8	6	2	0	0	0	0.78945	1	26980	26980		25.399	8.8334	1	818020			51945	11686	37740	38044	50745	50745					0.09206266811133901
SVPSSRLLF	9	Unmodified	_SVPSSRLLF_					0	0	0			REV__ENST00000524669.5_1_11:57416538-57416754:-|nuORF	REV__ENST00000524669.5_1_11:57416538-57416754:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	503.68927001953125	2	503.290017	1004.56548	-0.49356	-0.0002484	-0.81811	-0.00041175	-1.3117	-0.00066015	503.2897054420485	52.685	0.56007	52.685	52.336	52.897	0					23	10	3	0	0	0	0.65527	1	18756	18756		12.241	0	1	3328900	+		51946	25759	37741	38045	50746	50746					0.06338046822907017
SVPSSRLLF	9	Unmodified	_SVPSSRLLF_					0	0	0			REV__ENST00000524669.5_1_11:57416538-57416754:-|nuORF	REV__ENST00000524669.5_1_11:57416538-57416754:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	503.5075378417969	2	503.290017	1004.56548	-0.96131	-0.00048382	-0.27264	-0.00013722	-1.234	-0.00062104	503.2897948678424	51.899	0.45874	52.651	52.473	52.932	0.75225					13	7	2	0	0	0	0.55471	1	19546	19546		17.113	2.2746	1	3544300	+		51947	25759	37741	38045	50747	50747					0.06338046822907017
SVPTQGRALT	10	Unmodified	_SVPTQGRALT_					0	0	0		nc|ENSG00000134668|Q6ZMY3-5|SPOCD1;nc|ENSG00000134668|Q6ZMY3-2|SPOCD1;ENSG00000134668|ENST00000360482|SPOCD1	nc|ENSG00000134668|Q6ZMY3-5|SPOCD1	nc|ENSG00000134668|Q6ZMY3-5|SPOCD1	MULTI-SECPEP	A375_MHC_IP_R1	1	515.1552734375	2	515.288005	1028.56146	-0.6673	-0.00034385	3.063	0.0015783	2.3957	0.0012345	515.2886802474875	65.876	0.30445	65.876	65.616	65.921	0					8	5	2	0	0	0	0.8125	1	23831	23831		8.7454	0	1	768860			51948	4593	37742	38046	50748	50748					0.04831957329179204
SVQDPGLHVW	10	Unmodified	_SVQDPGLHVW_					0	0	0		ENST00000415012.1_1_2:85628700-85640330:-|nuORF;nc|ENSG00000042493|P40121-2|CAPG;ENSG00000042493|ENST00000263867|CAPG	ENST00000415012.1_1_2:85628700-85640330:-|nuORF	ENST00000415012.1_1_2:85628700-85640330:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	569.2132568359375	2	569.288005	1136.56146	-0.61488	-0.00035004	1.7397	0.00099039	1.1248	0.00064035	569.7903934411621	71.88	0.50616	72.615	72.314	72.82	0.73421					15	9	2	0	0	0	0.64716	1	27256	27256		29.082	9.8246	1	1915800			51949	1175	37743	38047	50749	50749					-0.001360426708288287
SVQIKLYFN	9	Unmodified	_SVQIKLYFN_					0	0	0			REV__ENST00000354234.8_1_13:50025805-50025898:+|nuORF	REV__ENST00000354234.8_1_13:50025805-50025898:+|nuORF	MSMS	A375_MHC_IP_R1	1	556.4280395507812	2	556.310949	1110.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.546	1	87.546	87.046	88.046	0								0	0	0	0.1521	1	32125	32125		18.146	2.2992	1		+		51950	23809	37744	38048	50750	50750					0.0564660251143323
SVQKDEFSY	9	Unmodified	_SVQKDEFSY_					0	0	0			REV__ENSG00000186086|ENST00000495380|NBPF6	REV__ENSG00000186086|ENST00000495380|NBPF6	MULTI-SECPEP	A375_MHC_IP_R1	1	551.63720703125	2	551.756204	1101.49785	-0.52678	-0.00029065	0.36876	0.00020347	-0.15802	-8.7189E-05	552.2574596594382	31.895	0.45873	31.895	31.514	31.973	0					12	8	2	0	0	0	0.69507	1	10218	10218		9.3831	0.63772	1	1779500	+		51951	21943	37745	38049	50751	50751					-0.0488344789855546
SVQLLLPQ	8	Unmodified	_SVQLLLPQ_					0	0	0			REV__nc|ENSG00000143768|O00292-2|LEFTY2	REV__nc|ENSG00000143768|O00292-2|LEFTY2	MULTI-MSMS	A375_MHC_IP_R1	1	449.6739807128906	2	449.273835	896.533118	-0.068018	-3.0559E-05	-0.063221	-2.8404E-05	-0.13124	-5.8962E-05	449.27375137205763	101.67	0.50455	101.67	101.45	101.95	0					12	9	2	0	0	0	0.73111	1	37397	37397		25.399	1.3787	1	989650	+		51952	19384	37746	38050	50752	50752					0.08071259419898524
SVQLLLPQ	8	Unmodified	_SVQLLLPQ_					0	0	0			REV__nc|ENSG00000143768|O00292-2|LEFTY2	REV__nc|ENSG00000143768|O00292-2|LEFTY2	MULTI-MSMS	A375_MHC_IP_R2	2	449.673828125	2	449.273835	896.533118	-0.1602	-7.1974E-05	0.21102	9.4806E-05	0.05082	2.2832E-05	449.27382430713715	100.79	0.51288	101.55	101.34	101.85	0.76278					15	9	2	0	0	0	0.73111	1	38254	38254		25.399	1.3787	1	825580	+		51953	19384	37746	38050	50753	50753					0.08071259419898524
SVQLLLPQ	8	Unmodified	_SVQLLLPQ_					0	0	0			REV__nc|ENSG00000143768|O00292-2|LEFTY2	REV__nc|ENSG00000143768|O00292-2|LEFTY2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	449.273835	896.533118	-0.068018	-3.0559E-05	-0.063221	-2.8404E-05	-0.13124	-5.8962E-05	449.27375137205763	101.67	0.50455	101.67	101.45	101.95	0	0.056739	-0.00015455	NaN	25.399	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	989650	+		51954	19384	37746	38050							0.08071259419898524
SVQLLLPQ	8	Unmodified	_SVQLLLPQ_					0	0	0			REV__nc|ENSG00000143768|O00292-2|LEFTY2	REV__nc|ENSG00000143768|O00292-2|LEFTY2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	449.273835	896.533118	-0.1602	-7.1974E-05	0.21102	9.4806E-05	0.05082	2.2832E-05	449.27382430713715	100.79	0.51288	101.55	101.34	101.85	0.76278	-0.056739	9.1872E-05	NaN	25.399	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	825580	+		51955	19384	37746	38050							0.08071259419898524
SVQRANPSL	9	Unmodified	_SVQRANPSL_					0	0	0		ENST00000425884.5_1_1:119683255-119689600:+|nuORF	ENST00000425884.5_1_1:119683255-119689600:+|nuORF	ENST00000425884.5_1_1:119683255-119689600:+|nuORF	MSMS	A375_MHC_IP_R1	1	486.6666259765625	2	486.267073	970.519593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.96	1	112.96	112.46	113.46	0								0	0	0	0.15486	1	41406	41406		7.9102	0.62092	1				51956	11798	37747	38051	50754	50754					0.03315401640657001
SVQVMPGWEM	10	Unmodified	_SVQVMPGWEM_					0	0	0			REV__ENST00000593068.6_2_19:1009676-1010060:-|nuORF	REV__ENST00000593068.6_2_19:1009676-1010060:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	387.93182373046875	3	388.51231	1162.5151	0.4505	0.00017503	-0.55775	-0.00021669	-0.10725	-4.1667E-05	388.84726310393506	21.486	0.50749	21.486	21.301	21.808	0					27	9	5	0	0	0	0.92227	1	5700	5700		7.9454	4.3583	1	7920400	+		51957	26455	37748	38052	50755	50755					-0.05965566888789908
SVRNYEQW	8	Unmodified	_SVRNYEQW_					0	0	0		nc|ENSG00000289720|Q96J02-3|ITCH;ENSG00000078747|ENST00000374864|ITCH;nc|ENSG00000289720|Q96J02|ITCH;ENST00000483727.5_1_20:33033173-33065666:+|nuORF	nc|ENSG00000289720|Q96J02-3|ITCH	nc|ENSG00000289720|Q96J02-3|ITCH	MULTI-MSMS	A375_MHC_IP_R2	2	541.6560668945312	2	541.256705	1080.49886	-1.0537	-0.0005703	0.16769	9.0761E-05	-0.88597	-0.00047954	541.2567693245894	49.163	1.4229	49.92	49.485	50.908	0.75736					62	27	4	0	0	0	0.76248	1	18607	18607		16.942	1.6938	1	84286000			51958	1682	37749	38053	50756	50756					-0.03817188739003541
SVRPPKKQL	9	Unmodified	_SVRPPKKQL_					0	0	0			REV__ENST00000585421.5_1_17:76851400-76851721:-|nuORF	REV__ENST00000585421.5_1_17:76851400-76851721:-|nuORF	MSMS	A375_MHC_IP_R2	2	526.6880493164062	2	526.832383	1051.65021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.942	1	29.64	29.14	30.14	0.69872								0	0	0	0.1535	1	10059	10059		15.847	0	1		+		51959	26379	37750	38054	50757	50757					0.12645417359499334
SVRRQYRL	8	Unmodified	_SVRRQYRL_					0	0	0		ENSG00000171954|ENST00000269703|CYP4F22	ENSG00000171954|ENST00000269703|CYP4F22	ENSG00000171954|ENST00000269703|CYP4F22	MSMS	A375_MHC_IP_R1	1	539.2141723632812	2	539.317432	1076.62031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.354	1	35.354	34.854	35.854	0								0	0	0	0.16876	1	11755	11755		5.2307	1.6342	1				51960	7664	37751	38055	50758	50758					0.08506478414165031
SVRYQCKNY	9	Unmodified	_SVRYQCKNY_					0	0	0		nc|ENSG00000257017|P00738-2|HP;ENSG00000257017|ENST00000355906|HP;ENST00000561927.3_16:72090108-72091373:+|nuORF;ENST00000565807.2_16:72088551-72090589:+|nuORF;ENST00000562488.1_16:72088551-72092313:+|nuORF	nc|ENSG00000257017|P00738-2|HP	nc|ENSG00000257017|P00738-2|HP	MSMS	A375_MHC_IP_R2	2	387.4452209472656	3	387.522086	1159.54443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.665	1	37.436	36.936	37.936	0.7709								0	0	0	0.15486	1	13382	13382		0.86438	0.23755	1				51961	9902	37752	38056	50759	50759					-0.02896286548275384
SVSALPRLL	9	Unmodified	_SVSALPRLL_					0	0	0			REV__ENST00000493238.1_1_3:149677832-149678888:+|nuORF	REV__ENST00000493238.1_1_3:149677832-149678888:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	478.7000732421875	2	478.300384	954.586216	-0.49367	-0.00023612	-0.12539	-5.9972E-05	-0.61905	-0.00029609	478.30028241516095	64.54	0.45885	65.28	65.054	65.513	0.74022					18	8	3	0	0	0	0.67483	1	24478	24478		14.838	0	1	2368400	+		51962	16796	37753	38057	50760	50760					0.10710637202555517
SVSDDLTSVTN	11	Unmodified	_SVSDDLTSVTN_					0	0	0		ENSG00000104228|ENST00000305364|TRIM35;nc|ENSG00000104228|Q9UPQ4-2|TRIM35	ENSG00000104228|ENST00000305364|TRIM35	ENSG00000104228|ENST00000305364|TRIM35	MSMS	A375_MHC_IP_R1	1	569.2009887695312	2	569.267133	1136.51971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.716	1	61.716	61.216	62.216	0								0	0	0	0.15183	1	22264	22264		19.362	0.10495	1				51963	2492	37754	38058	50761	50761					-0.0430868794064736
SVSDPYIQVQ	10	Unmodified	_SVSDPYIQVQ_					0	0	0		ENSG00000074276|ENST00000261944|CDHR2	ENSG00000074276|ENST00000261944|CDHR2	ENSG00000074276|ENST00000261944|CDHR2	MULTI-MSMS	A375_MHC_IP_R2	2	568.2161865234375	2	568.285128	1134.5557	-0.56152	-0.0003191	-0.20266	-0.00011517	-0.76418	-0.00043427	568.2844722017577	51.461	0.50777	52.213	51.966	52.473	0.75225					18	9	3	0	0	0	0.69306	1	19441	19441		13.906	0.86358	1	3326700			51964	1580	37755	38059	50762	50762					-0.00619185973164349
SVSIFRQF	8	Unmodified	_SVSIFRQF_					0	0	0		ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-MSMS	A375_MHC_IP_R1	1	492.6692810058594	2	492.269084	982.523616	-0.32201	-0.00015852	0.19179	9.4412E-05	-0.13022	-6.4105E-05	492.2691927645775	79.661	0.719	79.661	79.367	80.086	0					43	13	5	0	0	0	0.15393	2	29059	29059;29173		85.272	47.121	1	12619000			51965	6530	37756	38060	50763;50764	50763					0.03165491134382137
SVSKDHALRLW	11	Unmodified	_SVSKDHALRLW_					0	0	0		ENSG00000074266|ENST00000263360|EED;nc|ENSG00000074266|O75530-2|EED;ENST00000525244.5_1_11:85956313-85988207:+|nuORF;nc|ENSG00000074266|O75530-3|EED	ENSG00000074266|ENST00000263360|EED	ENSG00000074266|ENST00000263360|EED	MULTI-SECPEP	A375_MHC_IP_R2	2	437.65570068359375	3	437.910449	1310.70952	-0.40373	-0.0001768	-0.37661	-0.00016492	-0.78034	-0.00034172	438.24463595314256	45.006	0.30545	45.775	45.646	45.951	0.7691					10	5	2	0	0	0	0.9348	1	16800	16800		23.964	15.52	1	1592500			51966	1579	37757	38061	50765	50765					0.0665926858300736
SVSKDHALRLW	11	Unmodified	_SVSKDHALRLW_					0	0	0		ENSG00000074266|ENST00000263360|EED;nc|ENSG00000074266|O75530-2|EED;ENST00000525244.5_1_11:85956313-85988207:+|nuORF;nc|ENSG00000074266|O75530-3|EED	ENSG00000074266|ENST00000263360|EED	ENSG00000074266|ENST00000263360|EED	MULTI-MATCH	A375_MHC_IP_R1	1		3	437.910449	1310.70952	-0.054512	-2.3872E-05	-0.34906	-0.00015286	-0.40357	-0.00017673	438.2446665419505	46.069	0.35565	46.069	45.839	46.195	0	0.14668	1.4301E-05	NaN	23.964	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1524000			51967	1579	37757	38061							0.0665926858300736
SVSLLREWLHE	11	Unmodified	_SVSLLREWLHE_					0	0	0			REV__ENST00000290551.4_1_1:203277738-203278125:+|nuORF	REV__ENST00000290551.4_1_1:203277738-203278125:+|nuORF	MSMS	A375_MHC_IP_R2	2	684.602783203125	2	684.867151	1367.71975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.379	1	75.117	74.617	75.617	0.73752								0	0	0	0.16302	1	28234	28234		2.9952	0.49676	1		+		51968	23355	37758	38062	50766	50766					0.050598315176102915
SVSPLQRIY	9	Unmodified	_SVSPLQRIY_					0	0	0		ENST00000599581.5_1_19:52786637-52794448:+|nuORF;ENSG00000196214|ENST00000439461|ZNF766	ENST00000599581.5_1_19:52786637-52794448:+|nuORF	ENST00000599581.5_1_19:52786637-52794448:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	532.2005004882812	2	531.800749	1061.58694	-0.65066	-0.00034602	-0.25573	-0.00013599	-0.90638	-0.00048202	531.8009402652523	61.047	0.61137	61.047	60.719	61.331	0					33	11	4	0	0	0	0.05021	1	21956	21956		88.954	50.98	1	7587500			51969	9012	37759	38063	50767	50767					0.05861431851622001
SVSPLQRIY	9	Unmodified	_SVSPLQRIY_					0	0	0		ENST00000599581.5_1_19:52786637-52794448:+|nuORF;ENSG00000196214|ENST00000439461|ZNF766	ENST00000599581.5_1_19:52786637-52794448:+|nuORF	ENST00000599581.5_1_19:52786637-52794448:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	532.2005615234375	2	531.800749	1061.58694	-1.0024	-0.00053309	-0.7213	-0.00038359	-1.7237	-0.00091668	531.8010643163956	60.158	0.76313	60.905	60.553	61.316	0.74714					30	13	3	0	0	0	0.033808	1	22735	22735		78.728	34.87	1	7849600			51970	9012	37759	38063	50768	50768					0.05861431851622001
SVSPLRVVV	9	Unmodified	_SVSPLRVVV_					0	0	0			REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	MULTI-MSMS	A375_MHC_IP_R1	1	478.6999206542969	2	478.300384	954.586216	-0.59382	-0.00028402	0.42504	0.0002033	-0.16877	-8.0724E-05	478.30055871969336	65.575	0.66274	65.575	65.309	65.972	0					17	12	2	0	0	0	0.51106	1	23728	23728		19.257	0	1	2090200	+		51971	16526	37760	38064	50769	50769					0.10710637202566886
SVSPLRVVV	9	Unmodified	_SVSPLRVVV_					0	0	0			REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	478.300384	954.586216	-0.59382	-0.00028402	0.42504	0.0002033	-0.16877	-8.0724E-05	478.30055871969336	65.575	0.66274	65.575	65.309	65.972	0	0.14759	0.00030576	NaN	19.257	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2090200	+		51972	16526	37760	38064							0.10710637202566886
SVSPPQTLEY	10	Unmodified	_SVSPPQTLEY_					0	0	0			REV__nc|ENSG00000211659|P01717|IGLV3-25	REV__nc|ENSG00000211659|P01717|IGLV3-25	MULTI-SECPEP	A375_MHC_IP_R1	1	560.2156982421875	2	560.779679	1119.5448	-0.49339	-0.00027669	-2.6775	-0.0015015	-3.1709	-0.0017782	561.2799909118158	57.92	0.20314	57.92	57.771	57.974	0					5	3	2	0	0	0	0.74754	1	20764	20764		17.113	0	1	535890	+		51973	27466	37761	38065	50770	50770					-0.010185883474150614
SVSRGRPG	8	Unmodified	_SVSRGRPG_					0	0	0		ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	MULTI-SECPEP	A375_MHC_IP_R2	2	407.971435546875	2	408.227751	814.440949	0.083303	3.4006E-05	-0.60517	-0.00024705	-0.52187	-0.00021304	408.2276514159374	42.64	0.40591	43.412	43.218	43.623	0.7724					10	7	2	0	0	0	0.8957	1	15892	15892		15.847	0	1	900900			51974	9907	37762	38066	50771	50771					0.026305941262307897
SVSRLQASL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SVSRLQASL_					1	0	0			REV__ENSG00000105464|ENST00000263269|GRIN2D	REV__ENSG00000105464|ENST00000263269|GRIN2D	MULTI-MSMS	A375_MHC_IP_R1	1	502.182373046875	2	501.782556	1001.55056	-0.37752	-0.00018943	0.093674	4.7004E-05	-0.28385	-0.00014243	501.78255069510476	43.916	0.66351	43.916	43.655	44.318	0					18	12	2	0	0	0	0.037683	1	15311	15311		69.105	9.031	1	3911700	+		51975	17386	37763	38067	50772	50772					0.049845549548990675
SVSRLQASL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SVSRLQASL_					1	0	0			REV__ENSG00000105464|ENST00000263269|GRIN2D	REV__ENSG00000105464|ENST00000263269|GRIN2D	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	501.782556	1001.55056	-0.37752	-0.00018943	0.093674	4.7004E-05	-0.28385	-0.00014243	501.78255069510476	43.916	0.66351	43.916	43.655	44.318	0	0.024663	0.0002249	NaN	69.105	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3911700	+		51976	17386	37763	38067							0.049845549548990675
SVSRPEGRSW	10	Unmodified	_SVSRPEGRSW_					0	0	0		nc|ENSG00000131435|P50479-2|PDLIM4;ENSG00000131435|ENST00000253754|PDLIM4	nc|ENSG00000131435|P50479-2|PDLIM4	nc|ENSG00000131435|P50479-2|PDLIM4	MULTI-SECPEP	A375_MHC_IP_R2	2	387.9316711425781	3	387.53175	1159.57342	-0.46001	-0.00017827	0.17191	6.662E-05	-0.2881	-0.00011165	387.5318220350111	20.032	0.7098	20.642	20.248	20.958	0.61029					31	13	3	0	0	0	0.60245	1	6156	6156		32.616	3.3354	1	18551000			51977	4328	37764	38068	50773	50773					1.5740723938506562E-05
SVSRPEGRSW	10	Unmodified	_SVSRPEGRSW_					0	0	0		nc|ENSG00000131435|P50479-2|PDLIM4;ENSG00000131435|ENST00000253754|PDLIM4	nc|ENSG00000131435|P50479-2|PDLIM4	nc|ENSG00000131435|P50479-2|PDLIM4	MULTI-SECPEP	A375_MHC_IP_R2	2	581.1939086914062	2	580.793986	1159.57342	-0.62608	-0.00036362	0.013455	7.8147E-06	-0.61263	-0.00035581	580.7940360931708	20.066	0.45641	20.676	20.399	20.855	0.61029					13	8	2	0	0	0	0.88974	1	6203	6203		30.703	19.063	1	2256900			51978	4328	37764	38068	50774	50774					1.5740723938506562E-05
SVSSFIDPS	9	Unmodified	_SVSSFIDPS_					0	0	0			REV__ENST00000536072.6_1_16:67909906-67914140:+|nuORF	REV__ENST00000536072.6_1_16:67909906-67914140:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	938.8477783203125	1	938.446553	937.439277	-0.12726	-0.00011943	0.81594	0.00076572	0.68868	0.00064629	938.4474489429974	101.37	0.71121	102.14	101.8	102.51	0.76428					20	13	2	0	0	0	0.58047	1	38528	38528		15.847	4.2069	1	5300600	+		51979	16327	37765	38069	50775	50775					-0.03194504473037796
SVSSFIDPS	9	Unmodified	_SVSSFIDPS_					0	0	0			REV__ENST00000536072.6_1_16:67909906-67914140:+|nuORF	REV__ENST00000536072.6_1_16:67909906-67914140:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	938.446553	937.439277	0.04038	3.7895E-05	0.20326	0.00019074	0.24364	0.00022864	938.4466924035924	102.16	0.65801	102.16	101.9	102.56	0	0.014044	-0.00030283	NaN	15.847	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4300500	+		51980	16327	37765	38069							-0.03194504473037796
SVSTVLTSK	9	Unmodified	_SVSTVLTSK_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-SECPEP	A375_MHC_IP_R1	1	461.6657409667969	2	461.266207	920.517862	-0.55053	-0.00025394	0.25448	0.00011738	-0.29605	-0.00013656	461.26628639239885	30.628	0.50611	30.628	30.402	30.908	0					16	9	3	0	0	0	0.73926	1	9761	9761		12.873	12.873	1	3772800			51981	8913	37766	38070	50776	50776					0.05442347832035921
SVSTVLTSK	9	Unmodified	_SVSTVLTSK_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-SECPEP	A375_MHC_IP_R2	2	461.665771484375	2	461.266207	920.517862	-0.81026	-0.00037374	0.50683	0.00023378	-0.30343	-0.00013996	461.266290355995	29.908	0.55881	30.607	30.434	30.993	0.69872					19	10	3	0	0	0	0.69179	1	10492	10492		16.566	4.0343	1	4819600			51982	8913	37766	38070	50777	50777					0.05442347832035921
SVTALLSSLML	11	Unmodified	_SVTALLSSLML_					0	0	0		SLC13A1|p.P62S|1|0.59|ENSG00000081800|chr7:123181017-123181017|G/A|missense_variant	SLC13A1|p.P62S|1|0.59|ENSG00000081800|chr7:123181017-123181017|G/A|missense_variant	SLC13A1|p.P62S|1|0.59|ENSG00000081800|chr7:123181017-123181017|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	378.939697265625	3	378.886142	1133.6366	-0.15607	-5.9134E-05	0.19352	7.3322E-05	0.037448	1.4189E-05	378.8863927265513	23.881	0.40866	24.511	24.333	24.742	0.63014					11	7	2	0	0	0	0.72585	1	7710	7710		12.856	0	1	5097700			51983	29165	37767	38071	50778	50778					0.07512378745400383
SVTEIQEKW	9	Unmodified	_SVTEIQEKW_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	A375_MHC_IP_R1	1	560.6873779296875	2	560.287671	1118.56079	-0.43667	-0.00024466	0.49782	0.00027892	0.061146	3.4259E-05	560.2879499535862	52.161	1.2699	52.161	51.829	53.099	0					61	24	4	0	0	0	0.001114	3	18481	18481;18667;18711		152.89	86.429	1	128350000			51984	6987	37768	38072	50779;50780;50781	50779					0.0062511788946721936
SVTEKGVQSL	10	Unmodified	_SVTEKGVQSL_					0	0	0			REV__ENST00000523854.5_1_8:134511431-134511521:-|nuORF	REV__ENST00000523854.5_1_8:134511431-134511521:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	524.1859741210938	2	524.287671	1046.56079	-0.54676	-0.00028666	-1.9612	-0.0010282	-2.508	-0.0013149	524.787480554935	75.333	0.35579	76.073	75.825	76.181	0.74052					12	6	3	0	0	0	0.87043	1	28572	28572		10.8	0	1	1206900	+		51985	25747	37769	38073	50782	50782					0.03937117889495312
SVTKERLKV	9	Unmodified	_SVTKERLKV_					0	0	0			REV__nc|ENSG00000164932|Q96CG8-3|CTHRC1	REV__nc|ENSG00000164932|Q96CG8-3|CTHRC1	MULTI-SECPEP	A375_MHC_IP_R1	1	354.5961608886719	3	353.888874	1058.64479	-0.36321	-0.00012854	2.7954	0.00098927	2.4322	0.00086073	353.8899511557492	25.991	0.60747	25.991	25.816	26.423	0					17	11	2	0	0	0	0.7911	1	7711	7711		4.5289	0	1	3115800	+		51986	27329	37770	38074	50783	50783					0.11781693777038527
SVTKQLAI	8	Unmodified	_SVTKQLAI_					0	0	0		ENSG00000189099|ENST00000455694|PRSS48	ENSG00000189099|ENST00000455694|PRSS48	ENSG00000189099|ENST00000455694|PRSS48	MULTI-SECPEP	A375_MHC_IP_R2	2	430.6654968261719	2	430.26601	858.517468	-0.48626	-0.00020922	-0.28123	-0.000121	-0.76749	-0.00033023	430.26584025466366	61.854	0.50434	62.597	62.37	62.874	0.74263					15	9	2	0	0	0	0.92636	1	23471	23471		11.64	1.5664	1	1852700			51987	8959	37771	38075	50784	50784					0.08254972902830104
SVTLFPPSS	9	Unmodified	_SVTLFPPSS_					0	0	0		nc|ENSG00000222037|P0CF74|IGLC6;nc|ENSG00000211685|A0M8Q6|IGLC7;nc|ENSG00000211679|P0DOY3|IGLC3;nc|ENSG00000211677|P0DOY2|IGLC2;ENSG00000128322|ENST00000330377|IGLL1	nc|ENSG00000222037|P0CF74|IGLC6	nc|ENSG00000222037|P0CF74|IGLC6	MULTI-SECPEP	A375_MHC_IP_R1	1	934.8875732421875	1	934.488024	933.480748	-0.013734	-1.2834E-05	0.2051	0.00019166	0.19136	0.00017883	934.4881436057688	100.34	0.50661	100.34	100.03	100.53	0					12	9	2	0	0	0	0.4261	1	36950	36950		30.637	0	1	2738100			51988	4133	37772	38076	50785	50785					0.011346762862785909
SVTPDEETY	9	Unmodified	_SVTPDEETY_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-SECPEP	A375_MHC_IP_R1	1	1040.8427734375	1	1040.44186	1039.43459	0.054487	5.6691E-05	0.22741	0.00023661	0.2819	0.0002933	1040.4418748165183	41.94	0.5093	41.94	41.674	42.183	0					14	9	2	0	0	0	0.3607	1	14564	14564		34.102	12.356	1	3199900			51989	14531	37773	38077	50786	50786					-0.08355433406472912
SVTPDEETY	9	Unmodified	_SVTPDEETY_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MATCH	A375_MHC_IP_R2	2		1	1040.44186	1039.43459	-0.1367	-0.00014222	-0.086393	-8.9887E-05	-0.22309	-0.00023211	1040.4415523433397	41.349	0.40496	42.124	41.895	42.3	0.77451	0.09205	-0.00012312	NaN	34.102	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3132400			51990	14531	37773	38077							-0.08355433406472912
SVTRSSFLW	9	Unmodified	_SVTRSSFLW_					0	0	0		ENST00000372455.4_1_1:43852626-43853250:-|nuORF	ENST00000372455.4_1_1:43852626-43853250:-|nuORF	ENST00000372455.4_1_1:43852626-43853250:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	542.184814453125	2	541.785099	1081.55564	-0.67482	-0.00036561	0.087522	4.7418E-05	-0.5873	-0.00031819	541.785061869795	80.052	0.61256	80.052	79.676	80.289	0					20	11	3	0	0	0	0.40377	1	29214	29214		34.932	13.185	1	5304100			51991	11201	37774	38078	50787	50787					0.01812858817538654
SVTRSSFLW	9	Unmodified	_SVTRSSFLW_					0	0	0		ENST00000372455.4_1_1:43852626-43853250:-|nuORF	ENST00000372455.4_1_1:43852626-43853250:-|nuORF	ENST00000372455.4_1_1:43852626-43853250:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	541.6557006835938	2	541.785099	1081.55564	-0.73544	-0.00039845	-0.1243	-6.7346E-05	-0.85974	-0.0004658	541.7850883380925	79.113	0.55728	79.858	79.642	80.199	0.74474					20	10	3	0	0	0	0.4465	1	30013	30013		19.362	0	1	3147400			51992	11201	37774	38078	50788	50788					0.01812858817538654
SVTSHIYQV	9	Unmodified	_SVTSHIYQV_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-SECPEP	A375_MHC_IP_R1	1	517.6690673828125	2	517.269281	1032.52401	-0.39655	-0.00020512	-0.52512	-0.00027163	-0.92167	-0.00047675	517.2690349005937	43.376	0.56035	43.376	43.146	43.706	0					17	10	2	0	0	0	0.010998	1	15056	15056		139.14	70.034	1	12449000			51993	4101	37775	38079	50789	50789					0.00904866063569898
SVTSHIYQV	9	Unmodified	_SVTSHIYQV_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-SECPEP	A375_MHC_IP_R2	2	517.213134765625	2	517.269281	1032.52401	-0.67365	-0.00034846	-2.0406	-0.0010555	-2.7143	-0.001404	517.2690728213472	42.569	0.76041	43.342	43.116	43.876	0.7724					36	14	4	0	0	0	0.01128	1	15811	15811		92.653	76.504	1	11637000			51994	4101	37775	38079	50790	50790					0.00904866063569898
SVVATGGLTSV	11	Unmodified	_SVVATGGLTSV_					0	0	0			REV__ENSG00000204406|ENST00000642680|MBD5	REV__ENSG00000204406|ENST00000642680|MBD5	MULTI-SECPEP	A375_MHC_IP_R1	1	496.16619873046875	2	495.776939	989.539325	-0.57498	-0.00028506	0.22614	0.00011212	-0.34884	-0.00017295	495.77699315125847	39.567	0.2534	39.567	39.491	39.744	0					7	4	2	0	0	0	0.71172	1	13568	13568		31.268	0	1	1879200	+		51995	22513	37776	38080	50791	50791					0.0441373286076896
SVVPREASL	9	Unmodified	_SVVPREASL_					0	0	0		KANK4|p.P93S|1|0.3|ENSG00000132854|chr1:62274827-62274827|G/A|missense_variant	KANK4|p.P93S|1|0.3|ENSG00000132854|chr1:62274827-62274827|G/A|missense_variant	KANK4|p.P93S|1|0.3|ENSG00000132854|chr1:62274827-62274827|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	479.4637145996094	2	479.271824	956.529095	-0.64368	-0.0003085	-0.063581	-3.0472E-05	-0.70726	-0.00033897	479.27159865336694	50.873	0.40244	51.627	51.412	51.815	0.75406					12	7	2	0	0	0	0.49205	1	19155	19155		11.495	0	1	1327600			51996	14187	37777	38081	50792	50792					0.04909169926179402
SVVPREASL	9	Unmodified	_SVVPREASL_					0	0	0		KANK4|p.P93S|1|0.3|ENSG00000132854|chr1:62274827-62274827|G/A|missense_variant	KANK4|p.P93S|1|0.3|ENSG00000132854|chr1:62274827-62274827|G/A|missense_variant	KANK4|p.P93S|1|0.3|ENSG00000132854|chr1:62274827-62274827|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	479.271824	956.529095	-0.28344	-0.00013584	0.063745	3.0551E-05	-0.21969	-0.00010529	479.27183139308187	51.561	0.45664	51.561	51.322	51.778	0	-0.033077	3.1973E-05	NaN	16.149	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1303000			51997	14187	37777	38081							0.04909169926179402
SVVRRRRRLS	10	Unmodified	_SVVRRRRRLS_					0	0	0			REV__ENST00000232974.10_1_3:42700391-42700559:+|nuORF	REV__ENST00000232974.10_1_3:42700391-42700559:+|nuORF	MSMS	A375_MHC_IP_R2	2	642.910888671875	2	642.907811	1283.80107	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.21	1	104.97	104.47	105.47	0.76308								0	0	0	0.15435	1	39436	39436		6.7232	0.99131	1		+		51998	23073	37778	38082	50793	50793					0.17051996790883095
SVVVHVLPTI	10	Unmodified	_SVVVHVLPTI_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant;HMCN1|p.P2051Lfs*3|1|0.45|ENSG00000143341|chr1:186039851-186039861|CTGTTTCTAGT/-|frameshift_variant;ENST00000485744.5_1_1:185931700-185962449:+|nuORF;nc|ENSG00000143341|Q96RW7-3|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	A375_MHC_IP_R1	1	532.7286987304688	2	532.329142	1062.64373	-0.5329	-0.00028368	-1.1359	-0.00060468	-1.6688	-0.00088836	532.3288784100437	62.316	0.51146	62.316	62.046	62.557	0					18	9	3	0	0	0	0.63639	1	22536	22536		18.146	4.2403	1	2294100			51999	5371	37779	38083	50794	50794					0.11491479408141458
SVWFGPKEV	9	Unmodified	_SVWFGPKEV_					0	0	0		ENSG00000162769|ENST00000366971|FLVCR1	ENSG00000162769|ENST00000366971|FLVCR1	ENSG00000162769|ENST00000366971|FLVCR1	MULTI-MSMS	A375_MHC_IP_R2	2	525.6775512695312	2	524.776742	1047.53893	-0.47217	-0.00024778	-1.6066	-0.00084312	-2.0788	-0.0010909	524.7760324272291	73.843	1.4263	74.581	73.889	75.315	0.73751					65	27	4	0	0	0	0.26169	1	28002	28002		33.445	9.4243	1	5969300			52000	6591	37780	38084	50795	50795					0.01706357931561797
SVWPENTMC	9	Unmodified	_SVWPENTMC_					0	0	0		ENST00000567019.1_1_15:43489502-43501706:-|nuORF;nc|ENSG00000166947|P16452-3|EPB42;ENSG00000166947|ENST00000441366|EPB42;nc|ENSG00000166947|P16452-2|EPB42	ENST00000567019.1_1_15:43489502-43501706:-|nuORF	ENST00000567019.1_1_15:43489502-43501706:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	533.6455078125	2	533.720252	1065.42595	-0.72452	-0.00038669	0.14212	7.5851E-05	-0.58241	-0.00031084	533.7199495700484	36.995	0.96375	36.995	36.592	37.556	0					40	18	3	0	0	0	0.67332	1	12585	12585		9.3831	4.6271	1	6795700			52001	7137	37781	38085	50796	50796					-0.10414401848288435
SVWSWRRQ	8	Unmodified	_SVWSWRRQ_					0	0	0			REV__ENST00000503185.5_1_4:774435-775626:-|nuORF	REV__ENST00000503185.5_1_4:774435-775626:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	369.5767822265625	3	368.86143	1103.56246	-0.08785	-3.2405E-05	-0.85334	-0.00031476	-0.94119	-0.00034717	368.86080837355524	22.815	0.91627	23.445	23.113	24.029	0.63014					40	17	4	0	0	0	0.77562	1	7320	7320		8.1555	0	1	8345200	+		52002	25511	37782	38086	50797	50797					0.014822164887618783
SVWWPRFWWSV	11	Unmodified	_SVWWPRFWWSV_					0	0	0		ENST00000254351.8_1_2:20401609-20401801:-|nuORF	ENST00000254351.8_1_2:20401609-20401801:-|nuORF	ENST00000254351.8_1_2:20401609-20401801:-|nuORF	MSMS	A375_MHC_IP_R2	2	512.6495971679688	3	512.59094	1534.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.38	1	34.132	33.632	34.632	0.75225								0	0	0	0.16269	1	11954	11954		4.7159	0.87001	1				52003	10226	37783	38087	50798	50798					0.005004493423484746
SVYASWCIS	9	Unmodified	_SVYASWCIS_					0	0	0		ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	MSMS	A375_MHC_IP_R1	1	508.14056396484375	2	508.23131	1014.44807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.288	1	96.288	95.788	96.788	0								0	0	0	0.15283	1	35388	35388		16.942	2.104	1				52004	987	37784	38088	50799	50799					-0.058578541082283664
SVYDGKLLI	9	Unmodified	_SVYDGKLLI_					0	0	0		nc|ENSG00000105854|Q15165-3|PON2;nc|ENSG00000105854|Q15165-1|PON2;ENSG00000105854|ENST00000222572|PON2	nc|ENSG00000105854|Q15165-3|PON2	nc|ENSG00000105854|Q15165-3|PON2	MULTI-SECPEP	A375_MHC_IP_R1	1	504.6793212890625	2	504.292225	1006.5699	-0.57574	-0.00029034	-0.498	-0.00025114	-1.0737	-0.00054148	504.29177182225834	84.975	0.71486	84.975	84.647	85.362	0					30	13	3	0	0	0	0.10362	1	31141	31141		63.961	17.94	1	10740000			52005	2643	37785	38089	50800	50800					0.06687511245809219
SVYDGKLLI	9	Unmodified	_SVYDGKLLI_					0	0	0		nc|ENSG00000105854|Q15165-3|PON2;nc|ENSG00000105854|Q15165-1|PON2;ENSG00000105854|ENST00000222572|PON2	nc|ENSG00000105854|Q15165-3|PON2	nc|ENSG00000105854|Q15165-3|PON2	MULTI-SECPEP	A375_MHC_IP_R2	2	504.6920166015625	2	504.292225	1006.5699	-0.60103	-0.0003031	-0.34612	-0.00017454	-0.94715	-0.00047764	504.29184935194786	84.105	0.9175	84.844	84.458	85.375	0.73962					40	17	4	0	0	0	0.14606	1	31934	31934		63.961	20.102	1	11275000			52006	2643	37785	38089	50801	50801					0.06687511245809219
SVYDPQLKPL	10	Unmodified	_SVYDPQLKPL_					0	0	0		ENSG00000174990|ENST00000649794|CA5A	ENSG00000174990|ENST00000649794|CA5A	ENSG00000174990|ENST00000649794|CA5A	MULTI-SECPEP	A375_MHC_IP_R2	2	579.6615600585938	2	580.321514	1158.62847	-0.15021	-8.7169E-05	-0.70616	-0.0004098	-0.85637	-0.00049697	580.3212367541101	100.96	0.51398	101.72	101.39	101.91	0.76412					13	9	2	0	0	0	0.78945	1	38295	38295		13.906	0.86358	1	1537600			52007	7921	37786	38090	50802	50802					0.055505678202735
SVYKDPAGW	9	Unmodified	_SVYKDPAGW_					0	0	0		nc|ENSG00000140945|P55290-5|CDH13;ENSG00000140945|ENST00000567109|CDH13;nc|ENSG00000140945|P55290-4|CDH13	nc|ENSG00000140945|P55290-5|CDH13	nc|ENSG00000140945|P55290-5|CDH13	MULTI-SECPEP	A375_MHC_IP_R1	1	511.66021728515625	2	511.750724	1021.4869	-0.50076	-0.00025626	-0.068771	-3.5193E-05	-0.56953	-0.00029146	511.75059330011413	50.485	0.50954	50.485	50.204	50.713	0					29	9	4	0	0	0	0.062502	1	17899	17899		83.429	45.455	1	10527000			52008	5195	37787	38091	50803	50803					-0.022988054821894366
SVYKDPAGW	9	Unmodified	_SVYKDPAGW_					0	0	0		nc|ENSG00000140945|P55290-5|CDH13;ENSG00000140945|ENST00000567109|CDH13;nc|ENSG00000140945|P55290-4|CDH13	nc|ENSG00000140945|P55290-5|CDH13	nc|ENSG00000140945|P55290-5|CDH13	MULTI-MSMS	A375_MHC_IP_R2	2	512.65185546875	2	511.750724	1021.4869	-1.0152	-0.00051951	-0.13202	-6.756E-05	-1.1472	-0.00058707	511.7506050690961	49.769	0.66081	50.523	50.244	50.904	0.75406					30	12	3	0	0	0	0.10622	1	18697	18697		49.554	33.707	1	9764800			52009	5195	37787	38091	50804	50804					-0.022988054821894366
SVYPNGHFV	9	Unmodified	_SVYPNGHFV_					0	0	0		nc|ENSG00000166938|Q8TF46-3|DIS3L;ENST00000564909.5_1_15:66585934-66618751:+|nuORF;nc|ENSG00000166938|Q8TF46-2|DIS3L;nc|ENSG00000166938|Q8TF46-4|DIS3L;ENSG00000166938|ENST00000319212|DIS3L	nc|ENSG00000166938|Q8TF46-3|DIS3L	nc|ENSG00000166938|Q8TF46-3|DIS3L	MULTI-SECPEP	A375_MHC_IP_R1	1	510.63720703125	2	510.250892	1018.48723	-0.4293	-0.00021905	-0.51591	-0.00026324	-0.94521	-0.00048229	510.2506590823567	50.264	0.40953	50.264	50.049	50.459	0					13	7	2	0	0	0	0.58271	1	17786	17786		26.884	11.036	1	1312600			52010	7135	37788	38092	50805	50805					-0.021273857623327785
SVYPNGHFV	9	Unmodified	_SVYPNGHFV_					0	0	0		nc|ENSG00000166938|Q8TF46-3|DIS3L;ENST00000564909.5_1_15:66585934-66618751:+|nuORF;nc|ENSG00000166938|Q8TF46-2|DIS3L;nc|ENSG00000166938|Q8TF46-4|DIS3L;ENSG00000166938|ENST00000319212|DIS3L	nc|ENSG00000166938|Q8TF46-3|DIS3L	nc|ENSG00000166938|Q8TF46-3|DIS3L	MULTI-SECPEP	A375_MHC_IP_R2	2	510.6368408203125	2	510.250892	1018.48723	-1.015	-0.00051791	-2.0156	-0.0010285	-3.0306	-0.0015464	510.2508457562212	49.387	0.75881	50.145	49.69	50.449	0.75736					20	14	2	0	0	0	0.4261	1	18581	18581		37.974	22.726	1	1503100			52011	7135	37788	38092	50806	50806					-0.021273857623327785
SVYSRVIQV	9	Unmodified	_SVYSRVIQV_					0	0	0		ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	MULTI-SECPEP	A375_MHC_IP_R2	2	526.19970703125	2	525.800749	1049.58694	-0.88275	-0.00046415	-0.27889	-0.00014664	-1.1616	-0.00061079	525.8004149725998	59.288	0.35252	60.035	59.896	60.249	0.74714					10	6	2	0	0	0	0.37663	1	22508	22508		36.506	0	1	1485500			52012	8659	37789	38093	50807	50807					0.06413431851615314
SWAEIPTGGWS	11	Unmodified	_SWAEIPTGGWS_					0	0	0			REV__nc|ENSG00000110013|Q9HAT2-2|SIAE	REV__nc|ENSG00000110013|Q9HAT2-2|SIAE	MULTI-SECPEP	A375_MHC_IP_R1	1	596.1555786132812	2	595.77747	1189.54039	-0.46729	-0.0002784	-0.14874	-8.8616E-05	-0.61603	-0.00036702	595.777690209756	64.98	0.45615	64.98	64.649	65.105	0					11	8	2	0	0	0	0.9836	1	23452	23452		16.149	0.90062	1	1748200	+		52013	17607	37790	38094	50808	50808					-0.046800527703453554
SWDMGDASPLE	11	Unmodified	_SWDMGDASPLE_					0	0	0			REV__ENST00000283534.4_2_14:93651326-93652703:+|nuORF	REV__ENST00000283534.4_2_14:93651326-93652703:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	603.6344604492188	2	604.250428	1206.4863	-0.36183	-0.00021864	0.42061	0.00025415	0.058776	3.5516E-05	604.2506890019519	99.423	0.70753	99.423	99.067	99.774	0					16	13	2	0	0	0	0.9754	1	36537	36537		8.1555	0	1	1907500	+		52014	23331	37791	38095	50809	50809					-0.10868012984224151
SWDWLPAG	8	Unmodified	_SWDWLPAG_					0	0	0		nc|ENSG00000138835|P49796-7|RGS3;nc|ENSG00000138835|P49796-8|RGS3	nc|ENSG00000138835|P49796-7|RGS3	nc|ENSG00000138835|P49796-7|RGS3	MSMS	A375_MHC_IP_R2	2	466.1780700683594	2	466.21906	930.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.53	1	113.25	112.75	113.75	0.72458								0	0	0	0.16876	1	42421	42421		2.8892	0.58649	1				52015	14636	37792	38096	50810	50810					-0.044427461994359874
SWEECQSF	8	Unmodified	_SWEECQSF_					0	0	0			REV__ENSG00000169427|ENST00000520439|KCNK9	REV__ENSG00000169427|ENST00000520439|KCNK9	MSMS	A375_MHC_IP_R1	1	508.16595458984375	2	508.194925	1014.3753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.37	1	52.37	51.87	52.87	0								0	0	0	0.16876	1	18621	18621		5.7604	0	1		+		52016	20931	37793	38097	50811	50811					-0.13131607901641473
SWEESFWRLTV	11	Unmodified	_SWEESFWRLTV_					0	0	0		nc|ENSG00000121210|A2VDJ0-2|TMEM131L;nc|ENSG00000121210|A2VDJ0-6|TMEM131L;nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L;ENST00000497247.1_1_4:154523305-154524605:+|nuORF	nc|ENSG00000121210|A2VDJ0-2|TMEM131L	nc|ENSG00000121210|A2VDJ0-2|TMEM131L	MSMS	A375_MHC_IP_R1	1	480.67962646484375	3	480.569981	1438.68811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.045	1	58.045	57.545	58.545	0								0	0	0	0.16297	1	20842	20842		1.3296	0	1				52017	3711	37794	38098	50812	50812					-0.013681612363598106
SWFSRHESV	9	Unmodified	_SWFSRHESV_					0	0	0			REV__ENST00000564968.1_1_16:1507514-1509320:-|nuORF	REV__ENST00000564968.1_1_16:1507514-1509320:-|nuORF	MSMS	A375_MHC_IP_R2	2	567.7295532226562	2	567.76998	1133.52541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.3	1	129.54	129.04	130.04	0.23946								0	0	0	0.15486	1	50817	50817		12.532	2.4576	1		+		52018	26223	37795	38099	50813	50813					-0.0360149984767304
SWGGAKKA	8	Unmodified	_SWGGAKKA_					0	0	0			REV__ENST00000458640.5_1_6:31509729-31509867:-|nuORF	REV__ENST00000458640.5_1_6:31509729-31509867:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	403.1216735839844	2	402.72177	803.428987	-0.33269	-0.00013398	0.022218	8.9478E-06	-0.31047	-0.00012504	402.7217097379625	57.497	0.56054	58.246	57.917	58.477	0.74894					17	10	2	0	0	0	0.75322	1	21722	21722		19.439	1.304	1	3216300	+		52019	24951	37796	38100	50814	50814					0.019409773830375343
SWGGAKKA	8	Unmodified	_SWGGAKKA_					0	0	0			REV__ENST00000458640.5_1_6:31509729-31509867:-|nuORF	REV__ENST00000458640.5_1_6:31509729-31509867:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	402.72177	803.428987	-0.44605	-0.00017963	0.86239	0.0003473	0.41634	0.00016767	402.7219963456052	58.404	0.66119	58.404	58.024	58.685	0	0.079139	0.00049892	NaN	19.439	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3485900	+		52020	24951	37796	38100							0.019409773830375343
SWGGAKKA	8	Unmodified	_SWGGAKKA_					0	0	0			REV__ENST00000458640.5_1_6:31509729-31509867:-|nuORF	REV__ENST00000458640.5_1_6:31509729-31509867:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	402.72177	803.428987	-0.33269	-0.00013398	0.022218	8.9478E-06	-0.31047	-0.00012504	402.7217097379625	57.497	0.56054	58.246	57.917	58.477	0.74894	-0.079139	-0.00017779	NaN	19.439	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3216300	+		52021	24951	37796	38100							0.019409773830375343
SWHKMWREWWM	11	Unmodified	_SWHKMWREWWM_					0	0	0			REV__ENST00000301180.9_1_12:51133363-51135252:+|nuORF	REV__ENST00000301180.9_1_12:51133363-51135252:+|nuORF	MSMS	A375_MHC_IP_R2	2	831.93505859375	2	831.876473	1661.73839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.95	1	128.22	127.72	128.72	0.26592								0	0	0	0.1636	1	50229	50229		0	0	1		+		52022	23423	37797	38101	50815	50815					-0.06600653383861754
SWIENTAKD	9	Unmodified	_SWIENTAKD_					0	0	0		ENSG00000165076|ENST00000350549|PRSS37	ENSG00000165076|ENST00000350549|PRSS37	ENSG00000165076|ENST00000350549|PRSS37	MULTI-MSMS	A375_MHC_IP_R2	2	532.6558227539062	2	532.256371	1062.49819	-0.63764	-0.00033939	-0.45773	-0.00024363	-1.0954	-0.00058302	532.2560176495901	104.77	2.2396	105.53	105.16	107.4	0.76308					165	43	6	0	0	0	0.53367	1	39750	39750		18.146	1.9972	1	93003000			52023	6909	37798	38102	50816	50816					-0.030560281787074928
SWKKLLWT	8	Unmodified	_SWKKLLWT_					0	0	0			REV__ENST00000262460.4_1_20:25398781-25405892:+|nuORF	REV__ENST00000262460.4_1_20:25398781-25405892:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	532.433349609375	2	531.310752	1060.60695	-0.96287	-0.00051158	-0.13562	-7.2059E-05	-1.0985	-0.00058364	531.3107278684511	57.652	1.0635	58.401	57.865	58.929	0.74894					44	20	3	0	0	0	0.77603	1	21621	21621		9.3474	0	1	16204000	+		52024	23207	37799	38103	50817	50817					0.07907227582222731
SWKVSENLEL	10	Unmodified	_SWKVSENLEL_					0	0	0		ENST00000473381.1_1_21:43855574-43867301:+|nuORF	ENST00000473381.1_1_21:43855574-43867301:+|nuORF	ENST00000473381.1_1_21:43855574-43867301:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	402.61224365234375	3	402.211794	1203.61355	-0.0028337	-1.1397E-06	0.92379	0.00037156	0.92096	0.00037042	402.21206727648666	45.376	1.8794	45.376	43.909	45.789	0					41	36	2	0	0	0	0.83447	1	15900	15900		16.275	8.8455	1	1955000			52025	12388	37800	38104	50818	50818					0.019890759522922963
SWLPQPPLALT	11	Unmodified	_SWLPQPPLALT_					0	0	0			REV__ENSG00000135222|ENST00000353151|CSN2	REV__ENSG00000135222|ENST00000353151|CSN2	MULTI-SECPEP	A375_MHC_IP_R1	1	612.2453002929688	2	611.845156	1221.67576	-0.68172	-0.0004171	0.54334	0.00033244	-0.13837	-8.4662E-05	612.3470050031248	140.21	0.40938	140.21	139.88	140.29	0					20	7	3	0	0	0	0.99738	1	53811	53811		5.2969	1.7004	1	5182100	+		52026	18831	37801	38105	50819	50819					0.07378847091263196
SWLPQPPLALT	11	Unmodified	_SWLPQPPLALT_					0	0	0			REV__ENSG00000135222|ENST00000353151|CSN2	REV__ENSG00000135222|ENST00000353151|CSN2	MULTI-MATCH	A375_MHC_IP_R2	2		2	611.845156	1221.67576	-0.32949	-0.00020159	0.24254	0.0001484	-0.086949	-5.3199E-05	611.8452532865912	139.97	0.61504	140.03	139.8	140.42	0.059906	-0.08733	-0.00019807	NaN	5.2969	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5481600	+		52027	18831	37801	38105							0.07378847091263196
SWLRHDRRRWR	11	Unmodified	_SWLRHDRRRWR_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MULTI-SECPEP	A375_MHC_IP_R1	1	542.68896484375	3	541.966174	1622.87669	-0.82531	-0.00044729	0.86126	0.00046678	0.035953	1.9485E-05	541.9665875602429	90.565	0.76178	90.565	90.235	90.997	0					41	14	4	0	0	0	1.0011	1	33273	33273		1.3296	1.3296	1	11343000			52028	7848	37802	38106	50820	50820					0.09016973971120024
SWLRHDRRRWR	11	Unmodified	_SWLRHDRRRWR_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MULTI-MSMS	A375_MHC_IP_R2	2	542.6890258789062	3	541.966174	1622.87669	-0.74	-0.00040106	0.5326	0.00028865	-0.20741	-0.00011241	541.9665295066803	89.698	1.2202	90.43	89.886	91.106	0.7318					71	23	5	0	0	0	0.73795	1	34135	34135		1.3296	1.3296	1	11275000			52029	7848	37802	38106	50821	50821					0.09016973971120024
SWLRRIAIKV	10	Unmodified	_SWLRRIAIKV_					0	0	0			REV__ENSG00000175619|ENST00000309562|OR4B1	REV__ENSG00000175619|ENST00000309562|OR4B1	MULTI-SECPEP	A375_MHC_IP_R2	2	621.7763061523438	2	621.395682	1240.77681	-0.53488	-0.00033237	-0.85254	-0.00052977	-1.3874	-0.00086214	621.395866010317	149.88	0.17415	149.9	149.84	150.01	0.018265					18	16	2	0	0	0	0.95034	1	58157	58157		0.40072	0.093686	1	47332	+		52030	21355	37803	38107	50822	50822					0.16605343584615184
SWLRRIAIKV	10	Unmodified	_SWLRRIAIKV_					0	0	0			REV__ENSG00000175619|ENST00000309562|OR4B1	REV__ENSG00000175619|ENST00000309562|OR4B1	MULTI-MATCH	A375_MHC_IP_R1	1		2	621.395682	1240.77681	-0.79473	-0.00049384	-0.95596	-0.00059403	-1.7507	-0.0010879	621.3954975821126	149.96	0.1615	149.96	149.84	150	0	0.03188	-2.3595E-05	NaN	0.40072	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64396	+		52031	21355	37803	38107							0.16605343584615184
SWPIERLLRL	10	Unmodified	_SWPIERLLRL_					0	0	0			REV__ENST00000359513.8_1_11:46667456-46670726:+|nuORF	REV__ENST00000359513.8_1_11:46667456-46670726:+|nuORF	MSMS	A375_MHC_IP_R2	2	641.77392578125	2	641.885147	1281.75574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.82	1	143.84	143.34	144.34	0.024414								0	0	0	0.15583	1	56194	56194		1.6526	0.32309	1		+		52032	23876	37804	38108	50823	50823					0.12613333485114708
SWPRAFAKL	9	Unmodified	_SWPRAFAKL_					0	0	0			REV__ENSG00000218891|ENST00000325421|ZNF579	REV__ENSG00000218891|ENST00000325421|ZNF579	MULTI-MSMS	A375_MHC_IP_R1	1	359.6063537597656	3	359.206426	1074.59745	0.2122	7.6223E-05	-0.2798	-0.00010051	-0.067605	-2.4284E-05	359.2062460601005	56.547	0.96647	56.547	56.244	57.211	0					32	18	3	0	0	0	0.53367	1	20256	20256		12.873	2.722	1	5250200	+		52033	22684	37805	38109	50824	50824					0.06313459296711699
SWPVLKVTRH	10	Unmodified	_SWPVLKVTRH_					0	0	0			REV__ENSG00000109046|ENST00000262394|WSB1	REV__ENSG00000109046|ENST00000262394|WSB1	MSMS	A375_MHC_IP_R1	1	611.7550048828125	2	611.85639	1221.69823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.34	1	143.34	142.84	143.84	0								0	0	0	0.15588	1	54991	54991		3.5965	1.9439	1		+		52034	17566	37806	38110	50825	50825					0.09624491279555514
SWQQVPQNY	9	Unmodified	_SWQQVPQNY_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MSMS	A375_MHC_IP_R1	1	575.2009887695312	2	575.269813	1148.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.406	1	38.406	37.906	38.906	0								0	0	0	0.15486	1	13025	13025		12.532	3.7861	1		+		52035	19731	37807	38111	50826	50826					-0.0432491956753438
SWRGKYKRVF	10	Unmodified	_SWRGKYKRVF_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	A375_MHC_IP_R2	2	443.611328125	3	442.919168	1325.73567	-0.55446	-0.00024558	-0.41842	-0.00018532	-0.97288	-0.00043091	442.9188424280232	34.534	0.35416	35.287	35.16	35.514	0.75225					9	6	2	0	0	0	0.94363	1	12482	12482		5.4027	0.35519	1	1957600			52036	4973	37808	38112	50827	50827					0.08583582545156787
SWRLCLLPPA	10	Unmodified	_SWRLCLLPPA_					0	0	0			REV__ENST00000564774.5_1_16:84214522-84215086:-|nuORF	REV__ENST00000564774.5_1_16:84214522-84215086:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	578.7208251953125	2	578.320794	1154.62703	-0.26112	-0.00015101	0.86536	0.00050046	0.60425	0.00034945	578.3205936199026	127.64	3.0413	127.9	126.8	129.84	0.26592					141	59	4	0	0	0	0.71245	1	50382	50382		6.7232	0.51738	1	51263000	+		52037	26219	37809	38113	50828	50828					0.05590655250534837
SWRMRKRRRRR	11	Unmodified	_SWRMRKRRRRR_					0	0	0		ENST00000487093.5_1_3:51575631-51661706:+|nuORF	ENST00000487093.5_1_3:51575631-51661706:+|nuORF	ENST00000487093.5_1_3:51575631-51661706:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	548.7265014648438	3	548.66232	1642.96513	-0.59463	-0.00032625	1.3016	0.00071414	0.70697	0.00038789	548.6632439438512	139.49	0.19978	139.55	139.45	139.65	0.059906					6	3	2	0	0	0	0.73924	1	54655	54655		0.094841	0.094841	1	498080			52038	12592	37810	38114	50829	50829					0.1693669100995976
SWRWRRWRKRW	11	Unmodified	_SWRWRRWRKRW_					0	0	0			REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF	REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	587.233154296875	3	586.994064	1757.96036	-0.22609	-0.00013271	-0.70328	-0.00041282	-0.92937	-0.00054554	586.9940029125037	128.61	0.20312	128.61	128.53	128.73	0					5	3	2	0	0	0	1.0015	1	49376	49376		0	0	1	3155600	+		52039	23186	37811	38115	50830	50830					0.1117013013883934
SWSLDLGLQE	10	Unmodified	_SWSLDLGLQE_					0	0	0		nc|ENSG00000205045|Q6IEE8-2|SLFN12L;nc|ENSG00000205045|Q6IEE8|SLFN12L;ENSG00000205045|ENST00000628453|SLFN12L	nc|ENSG00000205045|Q6IEE8-2|SLFN12L	nc|ENSG00000205045|Q6IEE8-2|SLFN12L	MULTI-SECPEP	A375_MHC_IP_R1	1	383.30474853515625	3	383.192511	1146.5557	0.49654	0.00019027	1.1855	0.00045429	1.6821	0.00064456	383.1927985990545	44.292	0.51335	44.292	44.061	44.575	0					12	9	2	0	0	0	0.87043	1	15469	15469		13.519	7.3268	1	2018900			52040	14864	37812	38116	50831	50831					-0.01171185973134925
SWSLWRRLRSR	11	Unmodified	_SWSLWRRLRSR_					0	0	0		ENST00000308027.6_1_17:6939675-6939873:+|nuORF	ENST00000308027.6_1_17:6939675-6939873:+|nuORF	ENST00000308027.6_1_17:6939675-6939873:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	376.6048278808594	4	376.466738	1501.83785	0.011166	4.2036E-06	-0.53528	-0.00020151	-0.52411	-0.00019731	376.7172802986939	26.397	0.50738	26.397	26.068	26.575	0					27	9	4	0	0	0	1.0007	1	7913	7913		1.0136	0.6843	1	10528000			52041	10594	37813	38117	50832	50832					0.1070024861676302
SWSNNEYDY	9	Unmodified	_SWSNNEYDY_					0	0	0			REV__ENSG00000174898|ENST00000381624|CATSPERD	REV__ENSG00000174898|ENST00000381624|CATSPERD	MULTI-MSMS	A375_MHC_IP_R1	1	589.6249389648438	2	589.225268	1176.43598	-0.32625	-0.00019223	-0.080857	-4.7643E-05	-0.40711	-0.00023988	589.2251436622793	54.95	0.55777	54.95	54.67	55.228	0					22	10	3	0	0	0	0.6656	1	19631	19631		10.074	0	1	3403300	+		52042	21311	37814	38118	50833	50833					-0.14517799317718527
SWVCNRLEE	9	Unmodified	_SWVCNRLEE_					0	0	0			REV__ENST00000569265.1_2_16:50313527-50321995:+|nuORF	REV__ENST00000569265.1_2_16:50313527-50321995:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	568.6962890625	2	568.263673	1134.51279	-0.32338	-0.00018377	0.18185	0.00010334	-0.14153	-8.0429E-05	568.2638168734971	33.462	1.6697	33.462	33.09	34.759	0					48	32	3	0	0	0	0.4867	1	11330	11330		20.454	2.3073	1	4996000	+		52043	26267	37815	38119	50834	50834					-0.04908279302230767
SWWPRWWWAPG	11	Unmodified	_SWWPRWWWAPG_					0	0	0		ENST00000355943.7_1_5:110074744-110074849:+|nuORF	ENST00000355943.7_1_5:110074744-110074849:+|nuORF	ENST00000355943.7_1_5:110074744-110074849:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	505.97552490234375	3	505.575401	1513.70437	-0.72923	-0.00036868	1.208	0.00061074	0.47879	0.00024207	505.57601138422524	30.674	0.50449	31.392	31.114	31.618	0.71857					13	9	2	0	0	0	0.73807	1	10830	10830		1.2148	0.76031	1	3694600			52044	10958	37816	38120	50835	50835					-0.03192990488923897
SWWPRWWWAPG	11	Unmodified	_SWWPRWWWAPG_					0	0	0		ENST00000355943.7_1_5:110074744-110074849:+|nuORF	ENST00000355943.7_1_5:110074744-110074849:+|nuORF	ENST00000355943.7_1_5:110074744-110074849:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	505.575401	1513.70437	-0.72923	-0.00036868	1.208	0.00061074	0.47879	0.00024207	505.57601138422524	30.674	0.50449	31.392	31.114	31.618	0.71857	0.027132	0.00012601	NaN	1.2148	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3694600			52045	10958	37816	38120							-0.03192990488923897
SWYQHVQEWWE	11	Unmodified	_SWYQHVQEWWE_					0	0	0		ENSG00000261052|ENST00000338971|SULT1A3;ENSG00000213648|ENST00000360423|SULT1A4;ENSG00000197165|ENST00000335715|SULT1A2;ENSG00000196502|ENST00000314752|SULT1A1;nc|ENSG00000261052|P0DMM9-3|SULT1A3;ENST00000569959.5_1_16:30214216-30214357:+|nuORF;ENST00000562257.5_1_16:30212387-30214357:+|nuORF;nc|ENSG00000289755|P50225-2|SULT1A1	ENSG00000261052|ENST00000338971|SULT1A3;nc|ENSG00000289755|P50225-2|SULT1A1	ENSG00000261052|ENST00000338971|SULT1A3	MSMS	A375_MHC_IP_R1	1	526.712646484375	3	526.565119	1576.67353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.94	1	138.94	138.44	139.44	0								0	0	0	0.16358	1	53425	53425		0.094841	0	1				52046	9049;14952	37817	38121	50836	50836					-0.09174233384464969
SWYRGYCSPC	10	Unmodified	_SWYRGYCSPC_					0	0	0			REV__ENSG00000244624|ENST00000334664|KRTAP20-1	REV__ENSG00000244624|ENST00000334664|KRTAP20-1	MSMS	A375_MHC_IP_R2	2	611.2239379882812	2	611.244426	1220.4743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.6	1	101.37	100.87	101.87	0.76278								0	0	0	0.15531	1	38144	38144		3.5965	0.31518	1		+		52047	22826	37818	38122	50837	50837					-0.12711908208370915
SYADEIQRY	9	Unmodified	_SYADEIQRY_					0	0	0		tr|U7STW8|U7STW8_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01218PE=4SV=1	tr|U7STW8|U7STW8_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01218PE=4SV=1	tr|U7STW8|U7STW8_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01218PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	573.1671752929688	2	572.767103	1143.51965	-0.53371	-0.00030569	0.64176	0.00036758	0.10805	6.1887E-05	572.767548241389	23.713	0.20315	23.713	23.584	23.787	0					5	3	2	0	0	0	0.58047	1	6605	6605		15.847	4.2069	1	4593000			52048	29720	37819	38123	50838	50838					-0.046366431500018734
SYADEIQRY	9	Unmodified	_SYADEIQRY_					0	0	0		tr|U7STW8|U7STW8_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01218PE=4SV=1	tr|U7STW8|U7STW8_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01218PE=4SV=1	tr|U7STW8|U7STW8_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01218PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	572.767103	1143.51965	-0.60286	-0.0003453	-0.79034	-0.00045268	-1.3932	-0.00079798	572.7659291419915	23.025	0.3062	23.655	23.42	23.726	0.63014	-0.028654	-0.0016032	NaN	15.847	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1785300			52049	29720	37819	38123							-0.046366431500018734
SYAEALREV	9	Unmodified	_SYAEALREV_					0	0	0		ENSG00000116039|ENST00000234396|ATP6V1B1;ENST00000523482.5_1_8:20054917-20070443:+|nuORF;ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000116039|ENST00000234396|ATP6V1B1;ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-SECPEP	A375_MHC_IP_R1	1	519.6792602539062	2	519.266739	1036.51892	-0.70708	-0.00036716	0.61623	0.00031999	-0.090848	-4.7174E-05	519.2671133829125	52.991	0.55625	52.991	52.694	53.25	0					18	10	2	0	0	0	0.656	1	18892	18892		24.882	24.882	1	3884400			52050	3363;5680	37820	38124	50839	50839					0.00212562200931643
SYAEALREV	9	Unmodified	_SYAEALREV_					0	0	0		ENSG00000116039|ENST00000234396|ATP6V1B1;ENST00000523482.5_1_8:20054917-20070443:+|nuORF;ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000116039|ENST00000234396|ATP6V1B1;ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-SECPEP	A375_MHC_IP_R2	2	519.6659545898438	2	519.266739	1036.51892	-1.0684	-0.00055481	1.2361	0.00064185	0.16762	8.7042E-05	519.2668685009942	52.301	0.50506	53.053	52.78	53.285	0.75225					16	9	3	0	0	0	0.48845	1	19692	19692		37.075	13.926	1	3573500			52051	3363;5680	37820	38124	50840	50840					0.00212562200931643
SYAFISAVVS	10	Unmodified	_SYAFISAVVS_					0	0	0		tr|U7SNJ8|U7SNJ8_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02016PE=3SV=1	tr|U7SNJ8|U7SNJ8_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02016PE=3SV=1	tr|U7SNJ8|U7SNJ8_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02016PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	522.4349365234375	2	522.274032	1042.53351	-0.634	-0.00033112	1.2771	0.00066698	0.64308	0.00033586	522.7760431599826	75.089	0.25128	75.826	75.621	75.872	0.73752					6	4	2	0	0	0	0.91556	1	28480	28480		14.838	1.3304	1	735300			52052	29554	37821	38125	50841	50841					0.013946343490943036
SYAFNEWD	8	Unmodified	_SYAFNEWD_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MSMS	A375_MHC_IP_R2	2	516.181396484375	2	516.208889	1030.40323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.769	1	43.542	43.042	44.042	0.7724								0	0	0	0.16876	1	15919	15919		15.847	6.4997	1		+		52053	19379	37822	38126	50842	50842					-0.11075961649908095
SYAHCTSEGY	10	Unmodified	_SYAHCTSEGY_					0	0	0			REV__RBMY1A1|p.G415E|1|0.16|ENSG00000234414|chrY:21548801-21548801|G/A|missense_variant	REV__RBMY1A1|p.G415E|1|0.16|ENSG00000234414|chrY:21548801-21548801|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	558.6998291015625	2	559.216388	1116.41822	-0.46235	-0.00025855	4.3207	0.0024162	3.8583	0.0021576	559.7214421950777	89.357	0.50822	89.357	89.12	89.628	0					10	9	2	0	0	0	0.90853	1	32905	32905		6.7232	2.3939	1	758540	+		52054	27877	37823	38127	50843	50843					-0.13532837844218193
SYAKTYSR	8	Unmodified	_SYAKTYSR_					0	0	0			REV__nc|ENSG00000005175|Q9H6T3-3|RPAP3	REV__nc|ENSG00000005175|Q9H6T3-3|RPAP3	MULTI-MSMS	A375_MHC_IP_R2	2	488.6481018066406	2	488.248349	974.482145	-0.93133	-0.00045472	-0.071382	-3.4852E-05	-1.0027	-0.00048957	488.24820469527623	36.629	0.5592	37.4	37.005	37.564	0.7709					17	10	2	0	0	0	0.70783	1	13389	13389		32.305	3.2239	1	2803300	+		52055	16113	37824	38128	50844	50844					-0.0061168962496367385
SYAMANTGI	9	Oxidation (M)	_SYAM(Oxidation (M))ANTGI_		SYAM(1)ANTGI		SYAM(72)ANTGI	0	0	1		ENSG00000134294|ENST00000256689|SLC38A2;ENSG00000139209|ENST00000266579|SLC38A4	ENSG00000134294|ENST00000256689|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	MULTI-MSMS	A375_MHC_IP_R1	1	472.61285400390625	2	472.213117	942.411682	-0.51004	-0.00024085	0.69224	0.00032688	0.1822	8.6036E-05	472.2134195721465	40.004	0.76458	40.004	39.744	40.509	0					22	14	2	0	0	0	0.033557	1	13738	13738		71.922	35.878	1	2752800			52056	4563	37825	38129	50845	50845		236			-0.06182731004935249
SYAMANTGI	9	Oxidation (M)	_SYAM(Oxidation (M))ANTGI_		SYAM(1)ANTGI		SYAM(82)ANTGI	0	0	1		ENSG00000134294|ENST00000256689|SLC38A2;ENSG00000139209|ENST00000266579|SLC38A4	ENSG00000134294|ENST00000256689|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	MULTI-MSMS	A375_MHC_IP_R2	2	472.6129150390625	2	472.213117	942.411682	-0.66389	-0.0003135	0.44178	0.00020861	-0.22211	-0.00010488	472.21329185723454	39.419	0.66217	40.194	39.76	40.422	0.77451					18	12	2	0	0	0	0.021889	1	14525	14525		81.89	41.933	1	5673800			52057	4563	37825	38129	50846	50846		236			-0.06182731004935249
SYAYPDEIF	9	Unmodified	_SYAYPDEIF_					0	0	0			REV__tr|U7SNU5|U7SNU5_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01703PE=4SV=1	REV__tr|U7SNU5|U7SNU5_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01703PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	368.62799072265625	3	368.834324	1103.48114	0.46734	0.00017237	-0.2144	-7.9076E-05	0.25295	9.3295E-05	368.8342169427814	45.781	0.60893	45.781	45.434	46.043	0					25	11	3	0	0	0	0.78753	1	16042	16042		8.1555	1.0538	1	3831400	+		52058	28342	37826	38130	50847	50847					-0.06645948784557731
SYCANIFSLY	10	Unmodified	_SYCANIFSLY_					0	0	0			REV__OR4C13|p.D68N|1|0.24|ENSG00000258817|chr11:49952624-49952624|G/A|missense_variant	REV__OR4C13|p.D68N|1|0.24|ENSG00000258817|chr11:49952624-49952624|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	394.1317443847656	3	394.182959	1179.52705	0.39184	0.00015446	0.23674	9.332E-05	0.62859	0.00024778	394.18296644393274	38.933	0.55912	38.933	38.73	39.289	0					17	10	2	0	0	0	0.71245	1	13305	13305		3.5871	0	1	1519500	+		52059	27668	37827	38131	50848	50848					-0.055536268739388106
SYCEESDEEE	10	Unmodified	_SYCEESDEEE_					0	0	0		nc|ENSG00000114670|Q8NG66-4|NEK11;ENSG00000114670|ENST00000383366|NEK11	nc|ENSG00000114670|Q8NG66-4|NEK11	nc|ENSG00000114670|Q8NG66-4|NEK11	MSMS	A375_MHC_IP_R1	1	407.1473388671875	3	407.136291	1218.38704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.199	1	53.199	52.699	53.699	0								0	0	0	0.1562	1	18956	18956		0.69767	0.24315	1				52060	3237	37828	38132	50849	50849					-0.2134150045962997
SYDAILHIYY	10	Unmodified	_SYDAILHIYY_					0	0	0			REV__tr|U7T5J5|U7T5J5_FUSNUHeptaprenyldiphosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00171PE=3SV=1	REV__tr|U7T5J5|U7T5J5_FUSNUHeptaprenyldiphosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00171PE=3SV=1	MSMS	A375_MHC_IP_R2	2	629.2294921875	2	629.311146	1256.60774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.163	1	73.898	73.398	74.398	0.73541								0	0	0	0.14862	1	27772	27772		20.454	6.0482	1		+		52061	28827	37829	38133	50850	50850					-0.01030022559370991
SYDDVLSYNPD	11	Unmodified	_SYDDVLSYNPD_					0	0	0			REV__ENSG00000152229|ENST00000409746|PSTPIP2	REV__ENSG00000152229|ENST00000409746|PSTPIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	644.5059204101562	2	644.272415	1286.53028	-0.83463	-0.00053773	0.27347	0.00017619	-0.56116	-0.00036154	644.2724060142992	28.022	0.60849	28.7	28.452	29.06	0.67857					22	11	3	0	0	0	0.99332	1	9616	9616		13.042	13.042	1	4128600	+		52062	19796	37830	38134	50851	50851					-0.10152705286236596
SYDEKIDIW	9	Unmodified	_SYDEKIDIW_					0	0	0		ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	MULTI-MSMS	A375_MHC_IP_R1	1	585.1793212890625	2	584.779679	1167.5448	-0.45867	-0.00026822	0.25271	0.00014778	-0.20595	-0.00012044	584.779629448863	28.066	0.40167	28.066	27.836	28.238	0					17	7	3	0	0	0	0.27715	1	8613	8613		32.305	4.6767	1	6028900			52063	8705	37831	38135	50852	50852					-0.0322658834743379
SYDEKIDIW	9	Unmodified	_SYDEKIDIW_					0	0	0		ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	MULTI-MSMS	A375_MHC_IP_R2	2	585.1792602539062	2	584.779679	1167.5448	-0.39278	-0.00022969	0.21111	0.00012345	-0.18166	-0.00010623	584.779757263865	27.394	0.30525	28.073	27.895	28.2	0.67857					11	5	3	0	0	0	0.27715	1	9361	9361		32.305	3.2239	1	7417600			52064	8705	37831	38135	50853	50853					-0.0322658834743379
SYDEKIDIW	9	Unmodified	_SYDEKIDIW_					0	0	0		ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	584.779679	1167.5448	-0.45867	-0.00026822	0.25271	0.00014778	-0.20595	-0.00012044	584.779629448863	28.066	0.40167	28.066	27.836	28.238	0	-0.0030375	2.7312E-05	NaN	32.305	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6028900			52065	8705	37831	38135							-0.0322658834743379
SYDEKIDIW	9	Unmodified	_SYDEKIDIW_					0	0	0		ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	584.779679	1167.5448	-0.39278	-0.00022969	0.21111	0.00012345	-0.18166	-0.00010623	584.779757263865	27.394	0.30525	28.073	27.895	28.2	0.67857	0.0030375	-2.1344E-05	NaN	32.305	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7417600			52066	8705	37831	38135							-0.0322658834743379
SYDEKPEVYAS	11	Unmodified	_SYDEKPEVYAS_					0	0	0			REV__nc|ENSG00000165995|Q08289-6|CACNB2	REV__nc|ENSG00000165995|Q08289-6|CACNB2	MULTI-SECPEP	A375_MHC_IP_R2	2	644.6723022460938	2	644.290608	1286.56666	-0.8496	-0.00054739	0.65599	0.00042265	-0.19361	-0.00012474	644.2903736551875	28.129	0.35572	28.807	28.553	28.909	0.67857					10	6	2	0	0	0	0.9889	1	9663	9663		12.241	4.0851	1	1276200	+		52067	15555	37832	38136	50854	50854					-0.06515828389501621
SYDHHDELH	9	Unmodified	_SYDHHDELH_					0	0	0			REV__CSMD3|p.L1121S|1|0.3|ENSG00000164796|chr8:112638860-112638860|A/G|missense_variant	REV__CSMD3|p.L1121S|1|0.3|ENSG00000164796|chr8:112638860-112638860|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	577.151123046875	2	576.738877	1151.4632	-0.3282	-0.00018929	0.0797	4.5966E-05	-0.2485	-0.00014332	576.7389526700925	31.034	0.30305	31.034	30.908	31.211	0					6	5	2	0	0	0	0.69504	1	9955	9955		7.9102	1.7044	1	865050	+		52068	15925	37833	38137	50855	50855					-0.10647270986669355
SYDHIIKE	8	Unmodified	_SYDHIIKE_					0	0	0			REV__tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1	REV__tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	503.3001708984375	2	502.756007	1003.49746	-0.63015	-0.00031681	-0.15327	-7.7055E-05	-0.78341	-0.00039387	502.7559027464999	62.799	0.45407	63.541	63.282	63.736	0.74263					16	8	2	0	0	0	0.76248	1	23880	23880		16.942	1.0951	1	5932400	+		52069	28236	37834	38138	50856	50856					-0.004148228277585986
SYDKLLSAKN	10	Unmodified	_SYDKLLSAKN_					0	0	0		nc|ENSG00000159921|Q9Y223-2|GNE;nc|ENSG00000159921|Q9Y223-5|GNE;nc|ENSG00000159921|Q9Y223-3|GNE;ENSG00000159921|ENST00000642385|GNE;nc|ENSG00000159921|Q9Y223-4|GNE	nc|ENSG00000159921|Q9Y223-2|GNE	nc|ENSG00000159921|Q9Y223-2|GNE	MULTI-SECPEP	A375_MHC_IP_R2	2	569.147705078125	2	569.808771	1137.60299	-0.12113	-6.9022E-05	-0.50277	-0.00028648	-0.6239	-0.00035551	569.8084421161484	46.996	0.50901	47.757	47.513	48.022	0.76128					14	9	2	0	0	0	0.87163	1	17518	17518		13.906	6.6168	1	1550600			52070	14706	37835	38139	50857	50857					0.03969093297860127
SYDLAIKTI	9	Unmodified	_SYDLAIKTI_					0	0	0		ENST00000417053.2_1_1:202408173-202408263:+|nuORF	ENST00000417053.2_1_1:202408173-202408263:+|nuORF	ENST00000417053.2_1_1:202408173-202408263:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	513.4541625976562	2	512.289682	1022.56481	-0.57921	-0.00029672	-4.4286	-0.0022687	-5.0078	-0.0025655	512.2872498043037	94.04	0.65816	94.785	94.362	95.02	0.74473					24	12	3	0	0	0	0.55818	1	35699	35699		16.942	3.0362	1	1435500			52071	11698	37836	38140	50858	50858					0.05443207383189019
SYDPARYPRY	10	Unmodified	_SYDPARYPRY_					0	0	0		ENSG00000172458|ENST00000682841|IL17D	ENSG00000172458|ENST00000682841|IL17D	ENSG00000172458|ENST00000682841|IL17D	MULTI-SECPEP	A375_MHC_IP_R1	1	644.998046875	2	644.309469	1286.60439	-0.46779	-0.0003014	-3.6306	-0.0023392	-4.0984	-0.0026406	644.3062425893905	43.884	0.71416	43.884	43.502	44.216	0					18	13	2	0	0	0	0.78945	1	15132	15132		25.399	13.159	1	2697100			52072	7713	37837	38141	50859	50859					-0.02745272613378802
SYDPARYPRY	10	Unmodified	_SYDPARYPRY_					0	0	0		ENSG00000172458|ENST00000682841|IL17D	ENSG00000172458|ENST00000682841|IL17D	ENSG00000172458|ENST00000682841|IL17D	MULTI-SECPEP	A375_MHC_IP_R2	2	644.671875	2	644.309469	1286.60439	-0.54519	-0.00035127	-2.5082	-0.0016161	-3.0534	-0.0019674	644.3052339202849	43.341	0.91004	44.113	43.775	44.685	0.7724					40	17	3	0	0	0	0.78945	1	16123	16123		19.257	8.4331	1	2184700			52073	7713	37837	38141	50860	50860					-0.02745272613378802
SYDPDYIQC	9	Unmodified	_SYDPDYIQC_					0	0	0		ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	MULTI-MSMS	A375_MHC_IP_R1	1	552.6212158203125	2	552.221139	1102.42773	-0.49573	-0.00027375	0.44719	0.00024695	-0.048539	-2.6804E-05	552.2212726682053	47.541	0.659	47.541	47.211	47.87	0					23	12	2	0	0	0	0.38603	1	16694	16694		25.399	2.2509	1	6825600			52074	2512	37838	38142	50861	50861					-0.11939069558684423
SYDPDYIQC	9	Unmodified	_SYDPDYIQC_					0	0	0		ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	MULTI-MSMS	A375_MHC_IP_R2	2	368.883544921875	3	368.483185	1102.42773	0.41634	0.00015342	0.492	0.00018129	0.90835	0.00033471	368.4834128688013	46.85	0.60937	47.611	47.309	47.919	0.76127					27	11	3	0	0	0	0.60101	1	17552	17552		10.151	0.6066	1	4520500			52075	2512	37838	38142	50862	50862					-0.11939069558684423
SYEANFDNKY	10	Unmodified	_SYEANFDNKY_					0	0	0			REV__ENSG00000105656|ENST00000262809|ELL	REV__ENSG00000105656|ENST00000262809|ELL	MULTI-SECPEP	A375_MHC_IP_R1	1	626.169677734375	2	625.769842	1249.52513	-0.42952	-0.00026878	-0.97872	-0.00061245	-1.4082	-0.00088123	625.7696020338186	54.389	0.40583	54.389	54.213	54.619	0					13	7	2	0	0	0	0.93194	1	19494	19494		9.3831	0.63772	1	2662100	+		52076	17401	37839	38143	50863	50863					-0.08964964358187899
SYEDVFTY	8	Unmodified	_SYEDVFTY_					0	0	0			REV__TACR3|p.S460F|1|0.32|ENSG00000169836|chr4:103589701-103589701|G/A|missense_variant	REV__TACR3|p.S460F|1|0.32|ENSG00000169836|chr4:103589701-103589701|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	512.1614379882812	2	512.218923	1022.42329	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.793	1	85.529	85.029	86.029	0.73601								0	0	0	0.16876	1	32234	32234		10.183	0.83596	1		+		52077	28076	37840	38144	50864	50864					-0.08702210709941482
SYEEKINEFE	10	Unmodified	_SYEEKINEFE_					0	0	0			REV__ENSG00000065485|ENST00000316218|PDIA5	REV__ENSG00000065485|ENST00000316218|PDIA5	MULTI-SECPEP	A375_MHC_IP_R2	2	644.0736083984375	2	644.290608	1286.56666	-0.63092	-0.00040649	0.86179	0.00055525	0.23088	0.00014875	644.2907549135209	42.623	0.30505	43.395	43.218	43.523	0.7724					12	5	3	0	0	0	0.8528	1	15906	15906		16.149	7.9936	1	3477300	+		52078	16499	37841	38145	50865	50865					-0.06515828389547096
SYEESNPKDPA	11	Unmodified	_SYEESNPKDPA_					0	0	0		ENST00000460389.5_1_20:30136650-30157019:+|nuORF;ENST00000335574.9_2_20:30154038-30157019:+|nuORF;nc|ENSG00000101294|Q8TCT9-5|HM13;nc|ENSG00000101294|Q8TCT9|HM13;ENST00000492709.5_1_20:30132820-30157019:+|nuORF	ENST00000460389.5_1_20:30136650-30157019:+|nuORF;nc|ENSG00000101294|Q8TCT9-5|HM13	nc|ENSG00000101294|Q8TCT9-5|HM13	MSMS	A375_MHC_IP_R1	1	618.7584228515625	2	618.772582	1235.53061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.567	1	19.567	19.067	20.067	0								0	0	0	0.15759	1	4891	4891		15.739	8.6369	1				52079	14514;12167	37842	38146	50866	50866					-0.07773285566372579
SYEKKSRNW	9	Unmodified	_SYEKKSRNW_					0	0	0			REV__ENST00000459993.5_1_3:56657437-56657518:-|nuORF	REV__ENST00000459993.5_1_3:56657437-56657518:-|nuORF	MSMS	A375_MHC_IP_R2	2	399.7469787597656	3	399.871883	1196.59382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.067	1	47.828	47.328	48.328	0.76128								0	0	0	0.15486	1	17640	17640		4.897	2.3985	1		+		52080	24958	37843	38147	50867	50867					0.0033874473217565537
SYENEDEEL	9	Unmodified	_SYENEDEEL_					0	0	0		ENST00000565089.5_1_16:28948886-28950281:+|nuORF;ENST00000567368.1_1_16:28948327-28950281:+|nuORF;ENSG00000177455|ENST00000538922|CD19;nc|ENSG00000177455|P15391-2|CD19	ENST00000565089.5_1_16:28948886-28950281:+|nuORF	ENST00000565089.5_1_16:28948886-28950281:+|nuORF	MSMS	A375_MHC_IP_R1	1	564.1757202148438	2	564.222391	1126.43023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.771	1	60.771	60.271	61.271	0								0	0	0	0.15486	1	21885	21885		11.64	2.2929	1				52081	8084	37844	38148	50868	50868					-0.1279294262003532
SYENQPQS	8	Unmodified	_SYENQPQS_					0	0	0		DICER1|p.P1231S|1|0.2|ENSG00000100697|chr14:95103705-95103705|G/A|missense_variant	DICER1|p.P1231S|1|0.2|ENSG00000100697|chr14:95103705-95103705|G/A|missense_variant	DICER1|p.P1231S|1|0.2|ENSG00000100697|chr14:95103705-95103705|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	476.6845397949219	2	476.703971	951.393389	-0.82613	-0.00039382	-0.41655	-0.00019857	-1.2427	-0.00059239	476.70376019473935	60.636	0.4575	61.381	61.109	61.566	0.74503					14	8	3	0	0	0	0.77624	1	22877	22877		8.5933	1.304	1	2531400			52082	745	37845	38149	50869	50869					-0.08425149655272435
SYENQPQS	8	Unmodified	_SYENQPQS_					0	0	0		DICER1|p.P1231S|1|0.2|ENSG00000100697|chr14:95103705-95103705|G/A|missense_variant	DICER1|p.P1231S|1|0.2|ENSG00000100697|chr14:95103705-95103705|G/A|missense_variant	DICER1|p.P1231S|1|0.2|ENSG00000100697|chr14:95103705-95103705|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	476.703971	951.393389	-0.82613	-0.00039382	-0.41655	-0.00019857	-1.2427	-0.00059239	476.70376019473935	60.636	0.4575	61.381	61.109	61.566	0.74503	0.038199	0.00021865	NaN	8.5933	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2531400			52083	745	37845	38149							-0.08425149655272435
SYEPHSRYMS	10	Unmodified	_SYEPHSRYMS_					0	0	0		ENST00000519549.1_1_5:148617016-148620071:+|nuORF;ENST00000514212.5_1_5:148617016-148622118:+|nuORF;ENSG00000173210|ENST00000309868|ABLIM3	ENST00000519549.1_1_5:148617016-148620071:+|nuORF	ENST00000519549.1_1_5:148617016-148620071:+|nuORF	MSMS	A375_MHC_IP_R1	1	628.9681396484375	2	628.771862	1255.52917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.513	1	76.513	76.013	77.013	0								0	0	0	0.15465	1	27892	27892		5.7319	0.43497	1				52084	7776	37846	38150	50870	50870					-0.08837198136120605
SYESLELFT	9	Unmodified	_SYESLELFT_					0	0	0			REV__ENST00000310160.7_1_19:49252991-49253306:-|nuORF	REV__ENST00000310160.7_1_19:49252991-49253306:-|nuORF	MSMS	A375_MHC_IP_R2	2	544.692138671875	2	544.760955	1087.50736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.892	1	74.63	74.13	75.13	0.73752								0	0	0	0.15283	1	28048	28048		16.942	5.302	1		+		52085	23497	37847	38151	50871	50871					-0.03289679613044427
SYEVERYRE	9	Unmodified	_SYEVERYRE_					0	0	0		nc|ENSG00000115657|Q9NP58-4|ABCB6;ENSG00000115657|ENST00000265316|ABCB6;ENST00000446716.5_1_2:220075515-220081188:-|nuORF	nc|ENSG00000115657|Q9NP58-4|ABCB6	nc|ENSG00000115657|Q9NP58-4|ABCB6	MULTI-MSMS	A375_MHC_IP_R1	1	616.6925048828125	2	615.791109	1229.56767	-0.29859	-0.00018387	-0.92152	-0.00056746	-1.2201	-0.00075134	615.7906374248199	57.199	0.61224	57.199	56.956	57.568	0					26	11	3	0	0	0	0.43185	1	20498	20498		23.148	7.3012	1	4442100			52086	3329	37848	38152	50872	50872					-0.03793569229969762
SYEVHGQSI	9	Unmodified	_SYEVHGQSI_					0	0	0			REV__ENSG00000138759|ENST00000512123|FRAS1	REV__ENSG00000138759|ENST00000512123|FRAS1	MSMS	A375_MHC_IP_R1	1	510.17437744140625	2	510.243264	1018.47197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.676	1	89.676	89.176	90.176	0								0	0	0	0.12568	1	32945	32945		34.102	3.4659	1		+		52087	19118	37849	38153	50873	50873					-0.03652297350186018
SYEWRVLY	8	Unmodified	_SYEWRVLY_					0	0	0			REV__nc|ENSG00000095319|Q5SRE5-2|NUP188	REV__nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-MSMS	A375_MHC_IP_R1	1	558.6845092773438	2	558.279649	1114.54475	-0.35267	-0.00019689	4.3055	0.0024037	3.9528	0.0022068	558.2819859657271	110.42	1.1704	110.42	109.73	110.9	0					65	22	4	0	0	0	0.68907	1	40362	40362		38.151	2.107	1	14326000	+		52088	16991	37850	38154	50874	50874					-0.007945435567535242
SYFCFCYPGY	10	Unmodified	_SYFCFCYPGY_					0	0	0		LTBP2|p.S910F|1|0.26|ENSG00000119681|chr14:74521970-74521970|G/A|missense_variant	LTBP2|p.S910F|1|0.26|ENSG00000119681|chr14:74521970-74521970|G/A|missense_variant	LTBP2|p.S910F|1|0.26|ENSG00000119681|chr14:74521970-74521970|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	625.1937866210938	2	625.238278	1248.462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.21	1	84.21	83.71	84.71	0								0	0	0	0.1552	1	30838	30838		3.9444	0.3479	1				52089	14329	37851	38155	50875	50875					-0.15228944671434874
SYFKNNAYL	9	Unmodified	_SYFKNNAYL_					0	0	0		nc|ENSG00000115866|P14868-2|DARS1;ENSG00000115866|ENST00000264161|DARS1	nc|ENSG00000115866|P14868-2|DARS1	nc|ENSG00000115866|P14868-2|DARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	560.6771850585938	2	560.277106	1118.53966	-0.43605	-0.00024431	-0.42112	-0.00023594	-0.85717	-0.00048025	560.2771642181528	57.246	1.3225	57.246	56.397	57.72	0					37	25	3	0	0	0	0.16764	1	20564	20564		60.074	25.672	1	2093000			52090	3346	37852	38156	50876	50876					-0.014868474193917791
SYFKNNAYL	9	Unmodified	_SYFKNNAYL_					0	0	0		nc|ENSG00000115866|P14868-2|DARS1;ENSG00000115866|ENST00000264161|DARS1	nc|ENSG00000115866|P14868-2|DARS1	nc|ENSG00000115866|P14868-2|DARS1	MULTI-MSMS	A375_MHC_IP_R2	2	559.7216186523438	2	560.277106	1118.53966	-0.98363	-0.00055111	-0.3282	-0.00018388	-1.3118	-0.00073499	560.2770740359772	56.466	0.66328	57.216	56.745	57.408	0.75014					17	12	2	0	0	0	0.14922	2	21366	21366;21372		41.84	11.615	1	2900300			52091	3346	37852	38156	50877;50878	50877					-0.014868474193917791
SYFPEITHI	9	Unmodified	_SYFPEITHI_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	A375_MHC_IP_R1	1	554.1793823242188	2	553.779482	1105.54441	-0.30632	-0.00016964	-0.15554	-8.6134E-05	-0.46186	-0.00025577	553.7793966482078	92.59	1.1183	92.59	92.16	93.279	0					57	21	5	0	0	0	0.018481	2	33960	33960;34064		85.357	47.383	1	26830000			52092	6535	37853	38157	50879;50880	50879					-0.004139632766282375
SYFPEITHI	9	Unmodified	_SYFPEITHI_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	A375_MHC_IP_R2	2	554.1795043945312	2	553.779482	1105.54441	-0.68864	-0.00038136	0.15036	8.3268E-05	-0.53828	-0.00029809	553.779485119492	91.717	1.0137	92.452	92.122	93.135	0.7345					49	18	4	0	0	0	0.03063	2	34868	34868;34963		74.423	38.837	1	25209000			52093	6535	37853	38157	50881;50882	50881					-0.004139632766282375
SYFWRQLTW	9	Unmodified	_SYFWRQLTW_					0	0	0		ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	MULTI-SECPEP	A375_MHC_IP_R2	2	430.12200927734375	3	429.548741	1285.62439	-0.5557	-0.0002387	-0.046452	-1.9953E-05	-0.60215	-0.00025865	429.5489046920054	22.387	0.35852	23.006	22.846	23.204	0.61932					9	6	2	0	0	0	0.81166	1	7108	7108		2.7352	1.9587	1	1348500			52094	8441	37854	38158	50883	50883					-0.006994768827780717
SYGAEQLKQP	10	Unmodified	_SYGAEQLKQP_					0	0	0			REV__ENSG00000183876|ENST00000328668|ARSI	REV__ENSG00000183876|ENST00000328668|ARSI	MULTI-MSMS	A375_MHC_IP_R2	2	560.6797485351562	2	560.785296	1119.55604	-0.88676	-0.00049728	0.37637	0.00021106	-0.51039	-0.00028622	561.2880540016685	26.846	0.81489	27.506	26.857	27.671	0.65992					27	15	3	0	0	0	0.6806	1	9117	9117		14.838	4.7643	1	4253300	+		52095	21787	37855	38159	50884	50884					0.0010423374669699115
SYGDLKNAI	9	Unmodified	_SYGDLKNAI_					0	0	0		ENST00000554929.1_1_14:70237619-70238175:+|nuORF;ENST00000554465.5_1_14:70237039-70238175:+|nuORF;nc|ENSG00000100650|Q13243-3|SRSF5;ENSG00000100650|ENST00000557154|SRSF5	ENST00000554929.1_1_14:70237619-70238175:+|nuORF	ENST00000554929.1_1_14:70237619-70238175:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	490.6844177246094	2	490.756007	979.497461	-0.10027	-4.9208E-05	-0.78134	-0.00038345	-0.88161	-0.00043265	490.7556645079815	49.819	0.45847	49.819	49.591	50.049	0					13	8	2	0	0	0	0.29123	1	17621	17621		31.268	7.2478	1	1442200			52096	2208	37856	38160	50885	50885					0.006891771722166595
SYGGLHFF	8	Unmodified	_SYGGLHFF_					0	0	0			REV__ENST00000422090.2_1_19:50411206-50411455:-|nuORF	REV__ENST00000422090.2_1_19:50411206-50411455:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	465.6212158203125	2	464.221603	926.428653	-0.99554	-0.00046215	-0.2618	-0.00012153	-1.2573	-0.00058368	464.22185265364067	56.576	1.1734	57.326	56.745	57.918	0.75015					48	22	4	0	0	0	0.77488	1	21320	21320		13.508	1.8676	1	15181000	+		52097	24601	37857	38161	50886	50886					-0.0375044233682047
SYGHGSCL	8	Unmodified	_SYGHGSCL_					0	0	0			REV__ENST00000594846.1_1_19:51453353-51456194:-|nuORF	REV__ENST00000594846.1_1_19:51453353-51456194:-|nuORF	MSMS	A375_MHC_IP_R2	2	412.31512451171875	2	412.173795	822.333038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.016	1	56.767	56.267	57.267	0.75015								0	0	0	0.16876	1	21169	21169		5.7604	3.1829	1		+		52098	26466	37858	38162	50887	50887					-0.08523538519352769
SYHETIQTNTF	11	Unmodified	_SYHETIQTNTF_					0	0	0			REV__ENST00000477409.1_1_2:97001567-97024936:+|nuORF	REV__ENST00000477409.1_1_2:97001567-97024936:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	671.2098999023438	2	670.809499	1339.60444	-0.39207	-0.00026301	0.33856	0.00022711	-0.053511	-3.5896E-05	670.8096889588894	45.584	0.50476	45.584	45.334	45.839	0					24	9	4	0	0	0	0.92392	1	15947	15947		17.443	17.443	1	8227800	+		52099	18149	37859	38163	50888	50888					-0.0517731740403633
SYHETIQTNTF	11	Unmodified	_SYHETIQTNTF_					0	0	0			REV__ENST00000477409.1_1_2:97001567-97024936:+|nuORF	REV__ENST00000477409.1_1_2:97001567-97024936:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	671.2092895507812	2	670.809499	1339.60444	-0.87901	-0.00058965	0.52546	0.00035248	-0.35355	-0.00023717	670.8098844045246	44.903	0.56122	45.672	45.39	45.951	0.7691					28	10	4	0	0	0	0.85086	1	16754	16754		28.495	28.495	1	10339000	+		52100	18149	37859	38163	50889	50889					-0.0517731740403633
SYHPALNAI	9	Unmodified	_SYHPALNAI_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-SECPEP	A375_MHC_IP_R1	1	493.142822265625	2	493.258717	984.50288	-0.18201	-8.9776E-05	-0.041976	-2.0705E-05	-0.22398	-0.00011048	493.258756946099	51.776	0.86151	51.776	51.475	52.336	0					37	16	3	0	0	0	0.030624	1	18389	18389		88.904	48.946	1	22242000			52101	3337	37860	38164	50890	50890					0.010009007546955218
SYICWECHY	9	Unmodified	_SYICWECHY_					0	0	0			REV__ENSG00000148143|ENST00000277225|ZNF462	REV__ENSG00000148143|ENST00000277225|ZNF462	MSMS	A375_MHC_IP_R2	2	602.168701171875	2	602.233527	1202.4525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.131	1	44.9	44.4	45.4	0.7691								0	0	0	0.15486	1	16464	16464		4.756	0	1		+		52102	19615	37861	38165	50891	50891					-0.14062712956956602
SYIEELNL	8	Unmodified	_SYIEELNL_					0	0	0			REV__CFAP54|p.P2238L|1|0.52|ENSG00000188596|chr12:96708792-96708792|C/T|missense_variant	REV__CFAP54|p.P2238L|1|0.52|ENSG00000188596|chr12:96708792-96708792|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	490.66558837890625	2	490.75039	979.486227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.171	1	87.904	87.404	88.404	0.733								0	0	0	0.16876	1	33150	33150		26.341	0	1		+		52103	15649	37862	38166	50892	50892					-0.004336449219067617
SYIGGHEGL	9	Unmodified	_SYIGGHEGL_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MULTI-MSMS	A375_MHC_IP_R1	1	467.1270446777344	2	466.727249	931.439946	-0.16703	-7.7956E-05	-0.10121	-4.7236E-05	-0.26823	-0.00012519	466.72722474228493	39.31	0.50794	39.31	39.033	39.541	0					24	9	3	0	0	0	0.01574	2	13398	13398;13488		88.904	34.13	1	16656000			52104	6048	37863	38167	50893;50894	50893					-0.028516650333358484
SYIGGHEGL	9	Unmodified	_SYIGGHEGL_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MULTI-MSMS	A375_MHC_IP_R2	2	466.6581115722656	2	466.727249	931.439946	-1.0255	-0.00047864	0.25261	0.0001179	-0.77292	-0.00036074	466.72733897033595	38.464	0.55964	39.238	38.997	39.556	0.77451					23	10	3	0	0	0	0.064406	1	14206	14206		58.679	28.042	1	17164000			52105	6048	37863	38167	50895	50895					-0.028516650333358484
SYIILQLEQEK	11	Unmodified	_SYIILQLEQEK_					0	0	0		ZNF705B|p.G62E|1|1.0|ENSG00000215372|chr8:7950078-7950078|G/A|missense_variant;ZNF705A|p.G62E|2|0.12|ENSG00000196946|chr12:8175273-8175273|G/A|missense_variant	ZNF705B|p.G62E|1|1.0|ENSG00000215372|chr8:7950078-7950078|G/A|missense_variant	ZNF705B|p.G62E|1|1.0|ENSG00000215372|chr8:7950078-7950078|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	682.4434204101562	2	682.377017	1362.73948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.4107	1	5.8276	5.3276	6.3276	0.41691								0	0	0	0.1636	1	1734	1734		0	0	1				52106	30239	37864	38168	50896	50896					0.07262162737674771
SYIRAREE	8	Unmodified	_SYIRAREE_					0	0	0			REV__nc|ENSG00000166477|Q8WVC0-2|LEO1	REV__nc|ENSG00000166477|Q8WVC0-2|LEO1	MULTI-MSMS	A375_MHC_IP_R1	1	512.6643676757812	2	512.26453	1022.51451	-0.6222	-0.00031873	-0.14561	-7.4592E-05	-0.76781	-0.00039332	512.2644072423586	28.863	0.50622	28.863	28.643	29.149	0					21	9	3	0	0	0	0.70206	1	8961	8961		34.102	0	1	13391000	+		52107	20680	37865	38169	50897	50897					0.004150977780341236
SYISPEECEA	10	Unmodified	_SYISPEECEA_					0	0	0			REV__nc|ENSG00000110697|O00562-2|PITPNM1	REV__nc|ENSG00000110697|O00562-2|PITPNM1	MULTI-MSMS	A375_MHC_IP_R1	1	565.63916015625	2	564.231704	1126.44886	-0.33586	-0.0001895	1.0954	0.00061806	0.75954	0.00042856	564.2301441590372	47.531	1.4243	47.531	46.901	48.325	0					72	27	4	0	0	0	0.70496	1	16883	16883		10.074	0	1	5882200	+		52108	17636	37866	38170	50898	50898					-0.10931104249812051
SYKFIKEVR	9	Unmodified	_SYKFIKEVR_					0	0	0			REV__nc|ENSG00000148702|Q14520-2|HABP2	REV__nc|ENSG00000148702|Q14520-2|HABP2	MULTI-MSMS	A375_MHC_IP_R1	1	390.61688232421875	3	390.560758	1168.66044	0.19701	7.6943E-05	-0.80831	-0.0003157	-0.61131	-0.00023875	390.5604467134949	55.558	0.35748	55.558	55.381	55.738	0					8	6	2	0	0	0	0.60982	1	19922	19922		14.405	0.18721	1	628640	+		52109	19645	37867	38171	50899	50899					0.08285980294090223
SYKFIKEVR	9	Unmodified	_SYKFIKEVR_					0	0	0			REV__nc|ENSG00000148702|Q14520-2|HABP2	REV__nc|ENSG00000148702|Q14520-2|HABP2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	390.560758	1168.66044	0.19701	7.6943E-05	-0.80831	-0.0003157	-0.61131	-0.00023875	390.5604467134949	55.558	0.35748	55.558	55.381	55.738	0	0.081279	-0.00027046	NaN	14.405	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	628640	+		52110	19645	37867	38171							0.08285980294090223
SYKFIKEVR	9	Unmodified	_SYKFIKEVR_					0	0	0			REV__nc|ENSG00000148702|Q14520-2|HABP2	REV__nc|ENSG00000148702|Q14520-2|HABP2	MULTI-MATCH	A375_MHC_IP_R2	2		3	390.560758	1168.66044	-0.36536	-0.00014269	-0.42056	-0.00016425	-0.78592	-0.00030695	390.8950451336928	54.645	0.45698	55.396	55.118	55.575	0.75075	-0.081279	0.00018387	NaN	14.405	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1218900	+		52111	19645	37867	38171							0.08285980294090223
SYLATHRRIH	10	Unmodified	_SYLATHRRIH_					0	0	0		ENSG00000170949|ENST00000683776|ZNF160;ZNF160|p.F481Sfs*44|1|0.2|ENSG00000170949|chr19:53069092-53069092|A/-|frameshift_variant	ENSG00000170949|ENST00000683776|ZNF160	ENSG00000170949|ENST00000683776|ZNF160	MULTI-SECPEP	A375_MHC_IP_R1	1	418.2995910644531	3	418.566906	1252.67889	0.30193	0.00012638	2.2039	0.00092249	2.5059	0.0010489	418.56795778923896	35.325	0.45844	35.325	35.167	35.625	0					12	8	2	0	0	0	0.93406	1	11713	11713		6.1918	0	1	2102400			52112	7562	37868	38172	50900	50900					0.06265534988665422
SYLCETWKGY	10	Unmodified	_SYLCETWKGY_					0	0	0			REV__nc|ENSG00000141447|Q9BXW6-2|OSBPL1A	REV__nc|ENSG00000141447|Q9BXW6-2|OSBPL1A	MSMS	A375_MHC_IP_R1	1	417.3033142089844	3	417.190113	1248.54851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.739	1	54.739	54.239	55.239	0								0	0	0	0.15332	1	19558	19558		5.7834	1.3773	1		+		52113	19266	37869	38173	50901	50901					-0.06582241845239878
SYLDRVRSL	9	Unmodified	_SYLDRVRSL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000510337.1_1_5:122971848-122972142:+|nuORF;ENST00000411618.1_1_9:30800375-30800732:-|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000577198.5_1_17:26603697-26633156:-|nuORF;ENST00000506277.1_1_5:36885388-36885895:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000396959.2_1_3:12829511-12830132:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	A375_MHC_IP_R1	1	370.608642578125	3	370.208495	1107.60366	0.43476	0.00016095	1.0453	0.00038696	1.48	0.00054791	370.2084994186748	56.324	0.65915	56.324	55.991	56.65	0					33	12	5	0	0	0	0.4875	1	20168	20168		14.957	8.7653	1	7499200			52114	2963;11498	37870	38174	50902	50902					0.0541593273756007
SYLDRVRSL	9	Unmodified	_SYLDRVRSL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000510337.1_1_5:122971848-122972142:+|nuORF;ENST00000411618.1_1_9:30800375-30800732:-|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000577198.5_1_17:26603697-26633156:-|nuORF;ENST00000506277.1_1_5:36885388-36885895:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000396959.2_1_3:12829511-12830132:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	A375_MHC_IP_R2	2	370.6085205078125	3	370.208495	1107.60366	0.24771	9.1705E-05	0.64323	0.00023813	0.89094	0.00032983	370.2084636020898	55.461	0.81184	56.212	55.678	56.489	0.75075					32	15	4	0	0	0	0.50892	1	20941	20941		14.218	4.6742	1	6988200			52115	2963;11498	37870	38174	50903	50903					0.0541593273756007
SYLKGLWMEC	10	Unmodified	_SYLKGLWMEC_					0	0	0		ENSG00000159261|ENST00000399135|CLDN14;chr21:36510500-36576411|164|14.82|0.0|14.6|-|ENST00000342108|CLDN14,CLDN14;chr21:36461776-36510363|160|11.34|0.24|5.57|-|ENST00000399136|CLDN14,CLDN14	ENSG00000159261|ENST00000399135|CLDN14	ENSG00000159261|ENST00000399135|CLDN14	MULTI-SECPEP	A375_MHC_IP_R1	1	410.2726135253906	3	410.52796	1228.56205	-0.039675	-1.6288E-05	0.70991	0.00029144	0.67024	0.00027515	410.52821533454124	53.342	0.60819	53.342	53.048	53.656	0					17	11	2	0	0	0	0.93405	1	19021	19021		5.0475	5.0475	1	1589500			52116	469	37871	38175	50904	50904					-0.043087073376227636
SYLKGLWMEC	10	Unmodified	_SYLKGLWMEC_					0	0	0		ENSG00000159261|ENST00000399135|CLDN14;chr21:36510500-36576411|164|14.82|0.0|14.6|-|ENST00000342108|CLDN14,CLDN14;chr21:36461776-36510363|160|11.34|0.24|5.57|-|ENST00000399136|CLDN14,CLDN14	ENSG00000159261|ENST00000399135|CLDN14	ENSG00000159261|ENST00000399135|CLDN14	MULTI-MATCH	A375_MHC_IP_R2	2		3	410.52796	1228.56205	-0.41111	-0.00016877	0.08342	3.4246E-05	-0.32769	-0.00013453	410.52800222288874	52.407	0.50473	53.159	52.932	53.437	0.75225	-0.091694	-0.00037833	NaN	5.0475	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2280500			52117	469	37871	38175							-0.043087073376227636
SYLLQIKKW	9	Unmodified	_SYLLQIKKW_					0	0	0			REV__nc|ENSG00000122376|Q86V20|SHLD2	REV__nc|ENSG00000122376|Q86V20|SHLD2	MULTI-MSMS	A375_MHC_IP_R2	2	394.145263671875	3	393.569253	1177.68593	-0.25729	-0.00010126	0.084173	3.3128E-05	-0.17312	-6.8135E-05	393.56924518895056	45.177	0.45635	45.942	45.694	46.15	0.76519					24	8	4	0	0	0	0.68705	1	16821	16821		8.1555	0.21013	1	4279300	+		52118	18200	37872	38176	50905	50905					0.10419454816496909
SYLNWTFN	8	Unmodified	_SYLNWTFN_					0	0	0		ENST00000541377.5_1_2:122363504-122363705:-|nuORF	ENST00000541377.5_1_2:122363504-122363705:-|nuORF	ENST00000541377.5_1_2:122363504-122363705:-|nuORF	MSMS	A375_MHC_IP_R1	1	522.6686401367188	2	522.742899	1043.47125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.126	1	27.126	26.626	27.626	0								0	0	0	0.16876	1	8180	8180		10.824	0	1				52119	13284	37873	38177	50906	50906					-0.04875091999247161
SYLPGVGEL	9	Unmodified	_SYLPGVGEL_					0	0	0		ENST00000490517.5_1_17:17897468-17907868:+|nuORF;nc|ENSG00000171962|Q9H069-2|DRC3;ENSG00000171962|ENST00000399187|DRC3	ENST00000490517.5_1_17:17897468-17907868:+|nuORF	ENST00000490517.5_1_17:17897468-17907868:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	934.0222778320312	1	934.488024	933.480748	0.096295	8.9986E-05	-0.059474	-5.5578E-05	0.036821	3.4409E-05	934.4877686332156	82.385	1.9768	82.385	81.607	83.583	0					79	38	3	0	0	0	0.20567	1	30248	30248		46.021	11.919	1	8160700			52120	7666	37874	38178	50907	50907					0.011346762862785909
SYLPGVGEL	9	Unmodified	_SYLPGVGEL_					0	0	0		ENST00000490517.5_1_17:17897468-17907868:+|nuORF;nc|ENSG00000171962|Q9H069-2|DRC3;ENSG00000171962|ENST00000399187|DRC3	ENST00000490517.5_1_17:17897468-17907868:+|nuORF	ENST00000490517.5_1_17:17897468-17907868:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	934.488024	933.480748	-0.31541	-0.00029475	0.024778	2.3154E-05	-0.29064	-0.0002716	934.4878667873402	81.783	1.9267	82.526	81.621	83.547	0.74293	0.070505	3.8963E-05	NaN	46.021	68	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7457900			52121	7666	37874	38178							0.011346762862785909
SYLRPHLRIH	10	Unmodified	_SYLRPHLRIH_					0	0	0		nc|ENSG00000130544|Q8N988|ZNF557;ENSG00000130544|ENST00000252840|ZNF557	nc|ENSG00000130544|Q8N988|ZNF557	nc|ENSG00000130544|Q8N988|ZNF557	MULTI-MSMS	A375_MHC_IP_R2	2	431.62677001953125	3	431.250918	1290.73092	-0.25085	-0.00010818	-1.562	-0.00067363	-1.8129	-0.00078181	431.5847901833135	45.512	0.35222	46.278	46.15	46.503	0.76519					10	6	2	0	0	0	0.69306	1	17072	17072		8.4443	2.921	1	1386800			52122	4254	37875	38179	50908	50908					0.09718698402411974
SYLRPHLRIH	10	Unmodified	_SYLRPHLRIH_					0	0	0		nc|ENSG00000130544|Q8N988|ZNF557;ENSG00000130544|ENST00000252840|ZNF557	nc|ENSG00000130544|Q8N988|ZNF557	nc|ENSG00000130544|Q8N988|ZNF557	MULTI-MATCH	A375_MHC_IP_R1	1		3	431.250918	1290.73092	-0.16388	-7.0674E-05	-1.6938	-0.00073045	-1.8577	-0.00080113	431.2500646418727	46.331	0.24991	46.331	46.195	46.444	0	0.026912	-8.5951E-05	NaN	8.4443	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1509100			52123	4254	37875	38179							0.09718698402411974
SYLRPHLRIH	10	Unmodified	_SYLRPHLRIH_					0	0	0		nc|ENSG00000130544|Q8N988|ZNF557;ENSG00000130544|ENST00000252840|ZNF557	nc|ENSG00000130544|Q8N988|ZNF557	nc|ENSG00000130544|Q8N988|ZNF557	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	431.250918	1290.73092	-0.25085	-0.00010818	-1.562	-0.00067363	-1.8129	-0.00078181	431.5847901833135	45.512	0.35222	46.278	46.15	46.503	0.76519	-0.026912	8.4506E-05	NaN	8.4443	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1386800			52124	4254	37875	38179							0.09718698402411974
SYLTSASSL	9	Unmodified	_SYLTSASSL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MSMS	A375_MHC_IP_R2	2	464.6480407714844	2	464.73474	927.454927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.123	1	70.858	70.358	71.358	0.73421								0	0	0	0.15486	1	26582	26582		11.64	2.2929	1				52125	2516	37876	38180	50909	50909					-0.011702179559961223
SYMSDREFS	9	Unmodified	_SYMSDREFS_					0	0	0			REV__GRID2|p.P698S|2|0.54|ENSG00000152208|chr4:93515310-93515310|C/T|missense_variant	REV__GRID2|p.P698S|2|0.54|ENSG00000152208|chr4:93515310-93515310|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	561.1290893554688	2	561.232039	1120.44952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.063	1	69.798	69.298	70.298	0.73511								0	0	0	0.15486	1	26169	26169		10.824	2.2306	1		+		52126	26709	37877	38181	50910	50910					-0.10588264810098735
SYNDENEY	8	Unmodified	_SYNDENEY_					0	0	0			REV__MTMR7|p.G254E|1|0.21|ENSG00000003987|chr8:17331254-17331254|C/T|missense_variant	REV__MTMR7|p.G254E|1|0.21|ENSG00000003987|chr8:17331254-17331254|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	516.6063842773438	2	517.190894	1032.36723	-0.67059	-0.00034682	-0.10331	-5.343E-05	-0.77389	-0.00040025	517.1906962624103	42.86	0.6071	43.633	43.319	43.926	0.7724					16	11	2	0	0	0	0.972	1	15896	15896		5.7604	3.1829	1	1026800	+		52127	16094	37878	38182	50911	50911					-0.14765463617413843
SYNDFSFV	8	Unmodified	_SYNDFSFV_					0	0	0		ENST00000473770.5_1_22:32015600-32017204:-|nuORF;ENST00000460723.5_1_22:32015600-32017569:-|nuORF;nc|ENSG00000241878|Q9UG56-2|PISD;ENSG00000241878|ENST00000439502|PISD	ENST00000473770.5_1_22:32015600-32017204:-|nuORF	ENST00000473770.5_1_22:32015600-32017204:-|nuORF	MSMS	A375_MHC_IP_R1	1	489.6863098144531	2	489.713808	977.413062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.341	1	73.341	72.841	73.841	0								0	0	0	0.16876	1	26701	26701		9.3474	2.0582	1				52128	9788	37879	38183	50912	50912					-0.0765477364451499
SYNECSGL	8	Unmodified	_SYNECSGL_					0	0	0		ENST00000509702.5_1_4:23826795-23833347:-|nuORF;nc|ENSG00000109819|Q9UBK2-2|PPARGC1A;nc|ENSG00000109819|Q9UBK2-6|PPARGC1A;nc|ENSG00000109819|Q9UBK2-5|PPARGC1A;nc|ENSG00000109819|Q9UBK2-8|PPARGC1A;ENST00000509642.5_1_4:23822235-23883683:-|nuORF;nc|ENSG00000109819|Q9UBK2-9|PPARGC1A;nc|ENSG00000109819|Q9UBK2-4|PPARGC1A;ENSG00000109819|ENST00000264867|PPARGC1A;nc|ENSG00000109819|Q9UBK2-3|PPARGC1A	ENST00000509702.5_1_4:23826795-23833347:-|nuORF	ENST00000509702.5_1_4:23826795-23833347:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	437.0758056640625	2	436.676368	871.338183	-0.10435	-4.5569E-05	-2.1655	-0.00094562	-2.2699	-0.00099119	436.6758091935152	37.65	0.51055	37.65	37.402	37.913	0					17	9	2	0	0	0	0.77643	1	12733	12733		7.9102	1.5561	1	2966100			52129	2896	37880	38184	50913	50913					-0.1026327944739478
SYNEVREKY	9	Unmodified	_SYNEVREKY_					0	0	0			REV__ENSG00000149231|ENST00000646818|CCDC82	REV__ENSG00000149231|ENST00000646818|CCDC82	MULTI-MSMS	A375_MHC_IP_R2	2	396.5935363769531	3	396.527894	1186.56185	-0.45833	-0.00018174	0.13019	5.1623E-05	-0.32814	-0.00013012	396.5279324801328	23.042	1.0717	23.672	22.907	23.979	0.63014					30	20	2	0	0	0	0.67152	1	7232	7232		9.544	0.3002	1	8745600	+		52130	19668	37881	38185	50914	50914					-0.023966677416183302
SYNFMLFNLKY	11	Unmodified	_SYNFMLFNLKY_					0	0	0			REV__CHST11|p.D337N|1|0.29|ENSG00000171310|chr12:104757753-104757753|G/A|missense_variant	REV__CHST11|p.D337N|1|0.29|ENSG00000171310|chr12:104757753-104757753|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	480.4721374511719	3	480.572446	1438.69551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.183	1	30.183	29.683	30.683	0								0	0	0	0.16334	1	9555	9555		1.3296	0	1		+		52131	15787	37882	38186	50915	50915					-0.006291449602713328
SYNLRIKSL	9	Unmodified	_SYNLRIKSL_					0	0	0			REV__nc|ENSG00000112701|Q9GZR1-2|SENP6	REV__nc|ENSG00000112701|Q9GZR1-2|SENP6	MULTI-SECPEP	A375_MHC_IP_R1	1	547.2114868164062	2	547.321848	1092.62914	-0.13836	-7.5728E-05	0.33699	0.00018444	0.19863	0.00010871	547.32202397985	49.429	0.35646	49.429	49.285	49.642	0					9	6	2	0	0	0	0.6191	1	17496	17496		29.841	2.2118	1	2225100	+		52132	17749	37883	38187	50916	50916					0.0865340725997612
SYNYEIVNR	9	Unmodified	_SYNYEIVNR_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	A375_MHC_IP_R1	1	387.2971496582031	3	386.524372	1156.55129	-0.082193	-3.177E-05	-0.84013	-0.00032473	-0.92233	-0.0003565	386.5242790305196	26.622	0.55509	26.622	26.373	26.928	0					28	10	4	0	0	0	0.7911	1	7867	7867		4.5289	0	1	9752000			52133	9114	37884	38188	50917	50917					-0.020726503960759146
SYPSDHCQDNM	11	Unmodified	_SYPSDHCQDNM_					0	0	0		ENST00000568202.5_1_16:5075546-5083878:-|nuORF;nc|ENSG00000103174|Q9UK23-2|NAGPA;ENSG00000103174|ENST00000312251|NAGPA	ENST00000568202.5_1_16:5075546-5083878:-|nuORF	ENST00000568202.5_1_16:5075546-5083878:-|nuORF	MSMS	A375_MHC_IP_R2	2	648.7136840820312	2	648.734619	1295.45469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.52	1	107.28	106.78	107.78	0.75977								0	0	0	0.16302	1	40260	40260		2.9952	1.151	1				52134	2428	37885	38189	50918	50918					-0.18122329009793248
SYQDKRIN	8	Unmodified	_SYQDKRIN_					0	0	0		ENSG00000243284|ENST00000368100|VSIG8	ENSG00000243284|ENST00000368100|VSIG8	ENSG00000243284|ENST00000368100|VSIG8	MULTI-MSMS	A375_MHC_IP_R1	1	513.1921997070312	2	512.26453	1022.51451	-0.6222	-0.00031873	-0.14561	-7.4592E-05	-0.76781	-0.00039332	512.2644072423586	28.863	0.50622	28.863	28.643	29.149	0					21	9	3	0	0	0	0.77028	1	8942	8942		14.838	0.43289	1	13391000			52135	9807	37886	38190	50919	50919					0.004150977780454923
SYQEPNVTSI	10	Unmodified	_SYQEPNVTSI_					0	0	0			REV__nc|ENSG00000150867|P48426-2|PIP4K2A	REV__nc|ENSG00000150867|P48426-2|PIP4K2A	MULTI-MSMS	A375_MHC_IP_R2	2	569.6753540039062	2	569.274761	1136.53497	-0.23788	-0.00013542	0.48569	0.00027649	0.24781	0.00014107	569.2754458550739	109.37	0.76096	110.12	109.67	110.43	0.74684					28	14	3	0	0	0	0.52785	1	41294	41294		26.268	4.7312	1	1866800	+		52136	19730	37887	38191	50920	50920					-0.027837763527941206
SYQGVLPLK	9	Unmodified	_SYQGVLPLK_					0	0	0			REV__ENST00000472018.5_1_16:89760470-89762097:+|nuORF	REV__ENST00000472018.5_1_16:89760470-89762097:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1921081542969	2	502.792392	1003.57023	-0.54984	-0.00027646	-4.0293	-0.0020259	-4.5792	-0.0023024	503.29090013954635	87.467	0.85905	88.199	87.711	88.57	0.7318					44	16	4	0	0	0	0.20645	1	33189	33189		56.177	12.319	1	7237400	+		52137	21889	37888	38192	50921	50921					0.06858930965654508
SYQHLLYDF	9	Unmodified	_SYQHLLYDF_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4;REV__nc|ENSG00000127481|Q5T4S7-5|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	A375_MHC_IP_R1	1	396.605224609375	3	395.857351	1184.55022	-0.14321	-5.669E-05	0.53247	0.00021078	0.38926	0.00015409	395.85742612387446	65.13	0.40585	65.13	64.954	65.36	0					13	7	2	0	0	0	0.775	1	23578	23578		4.1895	0	1	1760300	+		52138	18422;27212	37889	38193	50922	50922					-0.034668647649596096
SYQLLSNF	8	Unmodified	_SYQLLSNF_					0	0	0			REV__BBX|p.P701L|1|0.14|ENSG00000114439|chr3:107778418-107778418|C/T|missense_variant	REV__BBX|p.P701L|1|0.14|ENSG00000114439|chr3:107778418-107778418|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	486.64532470703125	2	486.245275	970.475997	-0.67301	-0.00032725	0.20321	9.881E-05	-0.46979	-0.00022844	486.24538220545776	66.863	0.91519	67.599	67.24	68.155	0.73631					40	17	4	0	0	0	0.69583	1	25295	25295		36.044	7.5574	1	8386600	+		52139	15497	37890	38194	50923	50923					-0.010422078564715775
SYQMSERHCLH	11	Unmodified	_SYQMSERHCLH_					0	0	0		ENSG00000165120|ENST00000297819|SSMEM1	ENSG00000165120|ENST00000297819|SSMEM1	ENSG00000165120|ENST00000297819|SSMEM1	MULTI-SECPEP	A375_MHC_IP_R1	1	696.2034301757812	2	695.803171	1389.59179	-0.76116	-0.00052962	0.93569	0.00065105	0.17453	0.00012144	695.8039229005306	27.739	0.35343	27.739	27.533	27.887	0					15	6	3	0	0	0	0.90584	1	8486	8486		17.113	17.113	1	3320800			52140	6917	37891	38195	50924	50924					-0.08742375339556929
SYQMSERHCLH	11	Unmodified	_SYQMSERHCLH_					0	0	0		ENSG00000165120|ENST00000297819|SSMEM1	ENSG00000165120|ENST00000297819|SSMEM1	ENSG00000165120|ENST00000297819|SSMEM1	MULTI-MATCH	A375_MHC_IP_R2	2		2	695.803171	1389.59179	-0.69924	-0.00048654	1.2971	0.00090256	0.5979	0.00041602	695.8040012391365	27.212	0.35678	27.89	27.69	28.047	0.67857	0.075881	0.00042631	NaN	17.113	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2467400			52141	6917	37891	38195							-0.08742375339556929
SYQPLDPDKC	10	Unmodified	_SYQPLDPDKC_					0	0	0		nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	MULTI-MSMS	A375_MHC_IP_R2	2	583.181884765625	2	583.263339	1164.51212	-0.22145	-0.00012916	-0.20571	-0.00011998	-0.42716	-0.00024915	583.2631970628471	43.719	0.55445	44.488	44.228	44.782	0.7691					18	10	2	0	0	0	0.70651	1	16387	16387		9.3831	9.3831	1	5448100			52142	7518	37892	38196	50925	50925					-0.0635511874193071
SYRDSYKSY	9	Unmodified	_SYRDSYKSY_					0	0	0		RBMX|p.E286K|1|0.35|ENSG00000147274|chrX:136875095-136875095|C/T|missense_variant	RBMX|p.E286K|1|0.35|ENSG00000147274|chrX:136875095-136875095|C/T|missense_variant	RBMX|p.E286K|1|0.35|ENSG00000147274|chrX:136875095-136875095|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	585.1659545898438	2	584.767103	1167.51965	-0.50264	-0.00029393	-1.1534	-0.00067448	-1.6561	-0.00096841	584.7665302553013	39.738	0.50797	39.738	39.491	39.999	0					14	9	2	0	0	0	0.65721	1	13638	13638		10.824	0.75	1	2468700			52143	15272	37893	38197	50926	50926					-0.057406431500112376
SYRDSYKSY	9	Unmodified	_SYRDSYKSY_					0	0	0		RBMX|p.E286K|1|0.35|ENSG00000147274|chrX:136875095-136875095|C/T|missense_variant	RBMX|p.E286K|1|0.35|ENSG00000147274|chrX:136875095-136875095|C/T|missense_variant	RBMX|p.E286K|1|0.35|ENSG00000147274|chrX:136875095-136875095|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	584.767103	1167.51965	-0.50264	-0.00029393	-1.1534	-0.00067448	-1.6561	-0.00096841	584.7665302553013	39.738	0.50797	39.738	39.491	39.999	0	-0.041854	0.00036499	NaN	10.824	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2468700			52144	15272	37893	38197							-0.057406431500112376
SYRDSYKSY	9	Unmodified	_SYRDSYKSY_					0	0	0		RBMX|p.E286K|1|0.35|ENSG00000147274|chrX:136875095-136875095|C/T|missense_variant	RBMX|p.E286K|1|0.35|ENSG00000147274|chrX:136875095-136875095|C/T|missense_variant	RBMX|p.E286K|1|0.35|ENSG00000147274|chrX:136875095-136875095|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	584.767103	1167.51965	-0.68475	-0.00040042	-2.1278	-0.0012443	-2.8125	-0.0016447	584.7657916875687	39.047	0.40887	39.822	39.556	39.965	0.77451	0.041854	-0.00077457	NaN	10.824	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2022400			52145	15272	37893	38197							-0.057406431500112376
SYRDYLRLM	9	Unmodified	_SYRDYLRLM_					0	0	0			REV__ENSG00000152785|ENST00000282701|BMP3	REV__ENSG00000152785|ENST00000282701|BMP3	MULTI-SECPEP	A375_MHC_IP_R1	1	609.2091674804688	2	608.81079	1215.60703	-0.23035	-0.00014024	-2.3881	-0.0014539	-2.6184	-0.0015941	608.8089909602885	51.251	0.35585	51.251	51.068	51.424	0					15	6	3	0	0	0	0.73363	1	18223	18223		10.824	0	1	1558400	+		52146	19817	37894	38198	50927	50927					0.00784859519899328
SYRQNKKAK	9	Unmodified	_SYRQNKKAK_					0	0	0		chrX:152790761-152791511|277|12.4|0.0|20.24|+|1|MAGEA6-DT,MAGEA6-DT|1	chrX:152790761-152791511|277|12.4|0.0|20.24|+|1|MAGEA6-DT,MAGEA6-DT|1	chrX:152790761-152791511|277|12.4|0.0|20.24|+|1|MAGEA6-DT,MAGEA6-DT|1	MSMS	A375_MHC_IP_R1	1	374.9378967285156	3	374.884123	1121.63054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.922	1	44.922	44.422	45.422	0								0	0	0	0.15438	1	15694	15694		14.405	3.5064	1				52147	524	37895	38199	50928	50928					0.07459041348738538
SYRRSISST	9	Unmodified	_SYRRSISST_					0	0	0		ENSG00000129667|ENST00000675367|RHBDF2;nc|ENSG00000129667|Q6PJF5|RHBDF2;ENST00000590168.5_1_17:74469085-74473795:-|nuORF;ENST00000587640.1_1_17:74472910-74477606:-|nuORF;ENST00000589582.5_1_17:74470614-74477615:-|nuORF	ENSG00000129667|ENST00000675367|RHBDF2	ENSG00000129667|ENST00000675367|RHBDF2	MSMS	A375_MHC_IP_R2	2	528.6742553710938	2	528.775262	1055.53597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.663	1	90.394	89.894	90.894	0.7318								0	0	0	0.15486	1	34118	34118		12.241	1.4167	1				52148	4205	37896	38200	50929	50929					0.0104248280676984
SYRVQSKLL	9	Unmodified	_SYRVQSKLL_					0	0	0			REV__LLGL2|p.P883S|2|0.31|ENSG00000073350|chr17:75573200-75573200|C/T|missense_variant	REV__LLGL2|p.P883S|2|0.31|ENSG00000073350|chr17:75573200-75573200|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	365.616943359375	3	365.216991	1092.62914	0.054849	2.0032E-05	0.30643	0.00011191	0.36128	0.00013195	365.217040745134	48.44	0.76054	49.198	48.879	49.639	0.75736					38	14	5	0	0	0	0.082375	1	18145	18145		42.312	1.5876	1	12780000	+		52149	26931	37897	38201	50930	50930					0.08653407259998858
SYRVQSKLL	9	Unmodified	_SYRVQSKLL_					0	0	0			REV__LLGL2|p.P883S|2|0.31|ENSG00000073350|chr17:75573200-75573200|C/T|missense_variant	REV__LLGL2|p.P883S|2|0.31|ENSG00000073350|chr17:75573200-75573200|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	365.216991	1092.62914	0.054849	2.0032E-05	0.30643	0.00011191	0.36128	0.00013195	365.217040745134	48.44	0.76054	49.198	48.879	49.639	0.75736	-0.12601	0.00011858	NaN	42.312	38	14	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12780000	+		52150	26931	37897	38201							0.08653407259998858
SYRWRRRKRTR	11	Unmodified	_SYRWRRRKRTR_					0	0	0			REV__ENST00000433071.2_1_21:32931573-32932426:+|nuORF	REV__ENST00000433071.2_1_21:32931573-32932426:+|nuORF	MSMS	A375_MHC_IP_R1	1	810.9727783203125	2	810.974548	1619.93454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.556	1	61.556	61.056	62.056	0								0	0	0	0.1636	1	22199	22199		0	0	1		+		52151	24724	37898	38202	50931	50931					0.14937235896559287
SYSDLAFRCA	10	Unmodified	_SYSDLAFRCA_					0	0	0		ENST00000424751.2_1_10:42971400-42987542:+|nuORF	ENST00000424751.2_1_10:42971400-42987542:+|nuORF	ENST00000424751.2_1_10:42971400-42987542:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	378.58392333984375	3	378.174574	1131.50189	-0.19571	-7.4012E-05	0.16091	6.0853E-05	-0.034798	-1.316E-05	378.1745774824686	20.733	0.81133	21.343	20.855	21.666	0.61029					32	15	3	0	0	0	0.88918	1	6317	6317		11.518	4.4808	1	2194400			52152	11778	37899	38203	50932	50932					-0.0585968167649753
SYSFHSVSSI	10	Unmodified	_SYSFHSVSSI_					0	0	0		GPRC6A|p.S858F|1|0.22|ENSG00000173612|chr6:116792350-116792350|G/A|missense_variant	GPRC6A|p.S858F|1|0.22|ENSG00000173612|chr6:116792350-116792350|G/A|missense_variant	GPRC6A|p.S858F|1|0.22|ENSG00000173612|chr6:116792350-116792350|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	557.6636352539062	2	557.264196	1112.51384	-0.84619	-0.00047155	-0.2271	-0.00012656	-1.0733	-0.0005981	557.264178981915	70.814	0.85989	71.549	71.251	72.111	0.73421					25	16	2	0	0	0	0.91909	1	26894	26894		9.3831	0.63772	1	3455600			52153	14074	37900	38204	50933	50933					-0.03791741661643755
SYSHWQRRDYK	11	Unmodified	_SYSHWQRRDYK_					0	0	0		ENSG00000139531|ENST00000266971|SUOX	ENSG00000139531|ENST00000266971|SUOX	ENSG00000139531|ENST00000266971|SUOX	MULTI-MSMS	A375_MHC_IP_R1	1	509.6473388671875	3	509.248013	1524.72221	-0.59897	-0.00030503	-0.66863	-0.0003405	-1.2676	-0.00064553	509.2477932500415	32.906	0.70608	32.906	32.535	33.241	0					23	13	3	0	0	0	0.73318	1	10669	10669		5.8681	0.82062	1	4945000			52154	5084	37901	38205	50934	50934					-0.019163200247248824
SYSQHQSSY	9	Unmodified	_SYSQHQSSY_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-SECPEP	A375_MHC_IP_R1	1	544.1953125	2	543.727978	1085.4414	-0.57073	-0.00031032	-0.05313	-2.8888E-05	-0.62386	-0.00033921	543.7278273869626	60.337	0.45808	60.337	60.006	60.464	0					15	8	3	0	0	0	0.75466	1	21643	21643		12.532	9.2502	1	1643100			52155	8108	37902	38206	50935	50935					-0.09790075735213577
SYSSADSTTV	10	Unmodified	_SYSSADSTTV_					0	0	0			REV__ENST00000488567.5_1_2:242028765-242034027:-|nuORF	REV__ENST00000488567.5_1_2:242028765-242034027:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	509.6797790527344	2	509.222194	1016.42983	-0.31938	-0.00016264	-0.090191	-4.5927E-05	-0.40957	-0.00020856	509.2222625350667	56.102	0.50597	56.102	55.841	56.347	0					15	9	2	0	0	0	0.70329	1	20019	20019		10.824	1.4765	1	1287500	+		52156	25354	37903	38207	50936	50936					-0.07772317549222407
SYSTTHLSTIH	11	Unmodified	_SYSTTHLSTIH_					0	0	0			REV__INO80D|p.P846L|1|0.09|ENSG00000114933|chr2:206004915-206004915|G/A|missense_variant	REV__INO80D|p.P846L|1|0.09|ENSG00000114933|chr2:206004915-206004915|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	415.9255065917969	3	416.206932	1245.59897	0.18201	7.5755E-05	0.19386	8.0688E-05	0.37588	0.00015644	416.2070498677394	43.874	0.40296	44.643	44.329	44.732	0.76909					10	7	2	0	0	0	0.90584	1	16248	16248		13.519	10.199	1	1253800	+		52157	26794	37904	38208	50937	50937					-0.014009961958663553
SYTMSGILPY	10	Unmodified	_SYTMSGILPY_					0	0	0			REV__nc|ENSG00000137634|Q6UWF7-2|NXPE4	REV__nc|ENSG00000137634|Q6UWF7-2|NXPE4	MSMS	A375_MHC_IP_R2	2	566.2616577148438	2	566.273175	1130.5318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.868	1	85.604	85.104	86.104	0.73601								0	0	0	0.15105	1	32264	32264		15.847	0	1		+		52158	19021	37905	38209	50938	50938					-0.02824742731149854
SYTSQHSDY	9	Unmodified	_SYTSQHSDY_					0	0	0		nc|ENSG00000183853|Q96J84-3|KIRREL1;ENSG00000183853|ENST00000359209|KIRREL1;nc|ENSG00000183853|Q96J84-2|KIRREL1	nc|ENSG00000183853|Q96J84-3|KIRREL1	nc|ENSG00000183853|Q96J84-3|KIRREL1	MULTI-MSMS	A375_MHC_IP_R2	2	544.6192626953125	2	544.219985	1086.42542	-0.8659	-0.00047124	-0.24849	-0.00013523	-1.1144	-0.00060647	544.2197964058394	75.009	0.76218	75.746	75.416	76.178	0.73752					24	14	2	0	0	0	0.72507	1	28439	28439		4.756	4.756	1	3931900			52159	8537	37906	38210	50939	50939					-0.11433781972141333
SYVEDLRHQI	10	Unmodified	_SYVEDLRHQI_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-SECPEP	A375_MHC_IP_R2	2	630.2211303710938	2	630.322576	1258.6306	-0.76431	-0.00048176	0.80646	0.00050833	0.042145	2.6565E-05	630.3230530067841	132.5	0.30766	132.69	132.56	132.87	0.18953					8	5	2	0	0	0	0.90513	1	52135	52135		17.113	0	1	3227200			52160	6371	37907	38211	50940	50940					0.01162996558082341
SYVEEHKI	8	Unmodified	_SYVEEHKI_					0	0	0		PGAP1|p.A75V|1|0.35|ENSG00000197121|chr2:196920074-196920074|G/A|missense_variant	PGAP1|p.A75V|1|0.35|ENSG00000197121|chr2:196920074-196920074|G/A|missense_variant	PGAP1|p.A75V|1|0.35|ENSG00000197121|chr2:196920074-196920074|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	503.1558837890625	2	502.756007	1003.49746	-0.33782	-0.00016984	-0.79111	-0.00039774	-1.1289	-0.00056758	502.7553913946553	63.503	0.66448	63.503	63.173	63.837	0					22	12	2	0	0	0	0.85715	1	22949	22949		36.127	2.0246	1	6187300			52161	15161	37908	38212	50941	50941					-0.004148228277585986
SYVEEHKI	8	Unmodified	_SYVEEHKI_					0	0	0		PGAP1|p.A75V|1|0.35|ENSG00000197121|chr2:196920074-196920074|G/A|missense_variant	PGAP1|p.A75V|1|0.35|ENSG00000197121|chr2:196920074-196920074|G/A|missense_variant	PGAP1|p.A75V|1|0.35|ENSG00000197121|chr2:196920074-196920074|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	503.15576171875	2	502.756007	1003.49746	-0.63015	-0.00031681	-0.15327	-7.7055E-05	-0.78341	-0.00039387	502.7559027464999	62.799	0.45407	63.541	63.282	63.736	0.74263					16	8	2	0	0	0	0.87643	1	23801	23801		25.399	3.6527	1	5932400			52162	15161	37908	38212	50942	50942					-0.004148228277585986
SYVLKAEKE	9	Unmodified	_SYVLKAEKE_					0	0	0			REV__ENSG00000119685|ENST00000298832|TTLL5	REV__ENSG00000119685|ENST00000298832|TTLL5	MULTI-SECPEP	A375_MHC_IP_R1	1	355.92529296875	3	356.197485	1065.57063	-0.17295	-6.1604E-05	-1.3069	-0.00046551	-1.4798	-0.00052711	356.1970124823764	27.05	0.9073	27.05	26.524	27.432	0					33	17	3	0	0	0	0.73363	1	8025	8025		7.1017	0	1	4478500	+		52163	18085	37909	38213	50943	50943					0.04046305894826219
SYVMVGTF	8	Unmodified	_SYVMVGTF_					0	0	0		nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6	nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-4|BAG6	MULTI-MSMS	A375_MHC_IP_R2	2	452.1161193847656	2	452.217672	902.42079	-0.74334	-0.00033615	0.3101	0.00014023	-0.43324	-0.00019592	452.21805606020774	33.924	0.30309	34.677	34.5	34.803	0.75225					7	5	2	0	0	0	0.77488	1	12178	12178		13.508	0	1	1178900			52164	9446	37910	38214	50944	50944					-0.03432337648587236
SYVPAAAHDYS	11	Unmodified	_SYVPAAAHDYS_					0	0	0		nc|ENSG00000179348|P23769-2|GATA2;ENSG00000179348|ENST00000341105|GATA2	nc|ENSG00000179348|P23769-2|GATA2	nc|ENSG00000179348|P23769-2|GATA2	MULTI-SECPEP	A375_MHC_IP_R2	2	591.1664428710938	2	590.767103	1179.51965	-0.85768	-0.00050669	0.14347	8.4756E-05	-0.71421	-0.00042193	590.7671956080053	61.789	0.45427	62.532	62.319	62.774	0.74263					12	8	2	0	0	0	0.9836	1	23443	23443		7.609	0	1	2648400			52165	8224	37911	38215	50945	50945					-0.06292643150004551
SYVPVNSDNL	10	Unmodified	_SYVPVNSDNL_					0	0	0			REV__ARRDC3|p.Y394Ffs*4|1|0.2|ENSG00000113369|chr5:91373692-91373693|AA/-|frameshift_variant	REV__ARRDC3|p.Y394Ffs*4|1|0.2|ENSG00000113369|chr5:91373692-91373693|AA/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	554.195068359375	2	554.269478	1106.5244	-0.63043	-0.00034943	0.4562	0.00025286	-0.17424	-9.6575E-05	554.269613024389	43.361	0.45671	44.133	43.926	44.383	0.7724					16	8	3	0	0	0	0.69306	1	16119	16119		13.906	0	1	1736300	+		52166	15452	37912	38216	50946	50946					-0.024597590072289677
SYVRQRIP	8	Unmodified	_SYVRQRIP_					0	0	0			REV__nc|ENSG00000112584|Q96EK7-2|FAM120B	REV__nc|ENSG00000112584|Q96EK7-2|FAM120B	MULTI-SECPEP	A375_MHC_IP_R1	1	510.1927490234375	2	509.793258	1017.57196	-0.6482	-0.00033045	-0.34087	-0.00017377	-0.98907	-0.00050422	509.7931805789233	27.955	0.50387	27.955	27.684	28.188	0					27	9	4	0	0	0	0.90224	1	8543	8543		26.341	10.494	1	9402200	+		52167	17740	37913	38217	50947	50947					0.06387984774266897
SYVRQRIP	8	Unmodified	_SYVRQRIP_					0	0	0			REV__nc|ENSG00000112584|Q96EK7-2|FAM120B	REV__nc|ENSG00000112584|Q96EK7-2|FAM120B	MULTI-SECPEP	A375_MHC_IP_R2	2	510.19305419921875	2	509.793258	1017.57196	-0.7156	-0.00036481	-0.40118	-0.00020452	-1.1168	-0.00056933	509.79316584664264	27.241	0.56158	27.92	27.638	28.2	0.67857					23	10	3	0	0	0	0.90224	1	9271	9271		26.341	8.2063	1	8322000	+		52168	17740	37913	38217	50948	50948					0.06387984774266897
SYVRRRWLL	9	Unmodified	_SYVRRRWLL_					0	0	0			REV__ENSG00000130589|ENST00000467148|HELZ2	REV__ENSG00000130589|ENST00000467148|HELZ2	MULTI-MSMS	A375_MHC_IP_R2	2	417.3148193359375	3	416.915646	1247.72511	-0.034455	-1.4365E-05	-1.0645	-0.00044379	-1.0989	-0.00045815	416.91507248942696	75.67	0.7639	76.411	76.129	76.893	0.74052					23	14	2	0	0	0	0.056914	1	28731	28731		61.602	28.704	1	2968900	+		52169	18549	37914	38218	50949	50949					0.11115599890763406
SYVSDMNER	9	Unmodified	_SYVSDMNER_					0	0	0			REV__tr|U7SX00|U7SX00_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01231PE=4SV=1	REV__tr|U7SX00|U7SX00_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01231PE=4SV=1	MSMS	A375_MHC_IP_R1	1	550.674560546875	2	550.737488	1099.46042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.411	1	57.411	56.911	57.911	0								0	0	0	0.15486	1	20593	20593		12.532	1.7076	1		+		52170	28616	37915	38219	50950	50950					-0.08532862435845345
SYVSDMNER	9	Unmodified	_SYVSDMNER_					0	0	0			REV__tr|U7SX00|U7SX00_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01231PE=4SV=1	REV__tr|U7SX00|U7SX00_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01231PE=4SV=1	MSMS	A375_MHC_IP_R2	2	550.6743774414062	2	550.737488	1099.46042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.644	1	57.394	56.894	57.894	0.75015								0	0	0	0.15486	1	21412	21412		12.532	0.89125	1		+		52171	28616	37915	38219	50951	50951					-0.08532862435845345
SYWYTYNY	8	Unmodified	_SYWYTYNY_					0	0	0			REV__EIF4E2|p.F62Y|1|0.46|ENSG00000135930|chr2:232557933-232557933|T/A|missense_variant	REV__EIF4E2|p.F62Y|1|0.46|ENSG00000135930|chr2:232557933-232557933|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	386.6136474609375	3	387.162552	1158.46583	0.75089	0.00029072	-0.092284	-3.5729E-05	0.6586	0.00025499	387.16254087172877	69.441	0.55915	69.441	69.173	69.732	0					14	10	2	0	0	0	0.972	1	25176	25176		4.3292	0.45291	1	1134700	+		52172	16072	37916	38220	50952	50952					-0.10706815581716
SYWYTYNY	8	Unmodified	_SYWYTYNY_					0	0	0			REV__EIF4E2|p.F62Y|1|0.46|ENSG00000135930|chr2:232557933-232557933|T/A|missense_variant	REV__EIF4E2|p.F62Y|1|0.46|ENSG00000135930|chr2:232557933-232557933|T/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	387.162552	1158.46583	-0.033439	-1.2946E-05	0.06177	2.3915E-05	0.028331	1.0969E-05	387.16258471942274	68.8	0.45566	69.535	69.272	69.728	0.73511	0.046936	0.00010284	NaN	4.3292	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	948960	+		52173	16072	37916	38220							-0.10706815581716
SYYCECYE	8	Unmodified	_SYYCECYE_					0	0	0		MATN3|p.H330Y|1|0.18|ENSG00000132031|chr2:20002009-20002009|G/A|missense_variant	MATN3|p.H330Y|1|0.18|ENSG00000132031|chr2:20002009-20002009|G/A|missense_variant	MATN3|p.H330Y|1|0.18|ENSG00000132031|chr2:20002009-20002009|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	353.7777404785156	3	353.785988	1058.33613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.109	1	19.109	18.609	19.609	0								0	0	0	0.16876	1	4603	4603		0	0	1				52174	14355	37917	38221	50953	50953					-0.19070076247521683
SYYCECYEGY	10	Unmodified	_SYYCECYEGY_					0	0	0		MATN3|p.H330Y|1|0.18|ENSG00000132031|chr2:20002009-20002009|G/A|missense_variant	MATN3|p.H330Y|1|0.18|ENSG00000132031|chr2:20002009-20002009|G/A|missense_variant	MATN3|p.H330Y|1|0.18|ENSG00000132031|chr2:20002009-20002009|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	640.1685180664062	2	640.21774	1278.42093	-0.561	-0.00035916	-0.36599	-0.00023431	-0.92699	-0.00059348	640.2177773567837	94	1.5683	94.744	94.262	95.83	0.74473					98	30	5	0	0	0	0.70496	1	35951	35951		10.074	0.6908	1	67985000			52175	14355	37918	38222	50954	50954					-0.20714750501588242
SYYMDHDTKFY	11	Unmodified	_SYYMDHDTKFY_					0	0	0			REV__tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1	REV__tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	490.9393310546875	3	490.539582	1468.59692	-0.13288	-6.518E-05	-0.63525	-0.00031161	-0.76812	-0.00037679	490.5393035037397	51.803	0.35559	51.803	51.575	51.93	0					15	6	3	0	0	0	0.73658	1	18395	18395		2.6312	0.19645	1	3092300	+		52176	28208	37919	38223	50955	50955					-0.11863792995995937
SYYMDHDTKFY	11	Unmodified	_SYYMDHDTKFY_					0	0	0			REV__tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1	REV__tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	490.9390563964844	3	490.539582	1468.59692	-0.67771	-0.00033245	-0.29162	-0.00014305	-0.96934	-0.0004755	490.53941205022244	51.188	0.50533	51.94	51.613	52.118	0.75225					13	9	2	0	0	0	0.73795	1	19287	19287		1.3296	0	1	2869700	+		52177	28208	37919	38223	50956	50956					-0.11863792995995937
SYYMDHDTKFY	11	Unmodified	_SYYMDHDTKFY_					0	0	0			REV__tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1	REV__tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	490.539582	1468.59692	-0.13288	-6.518E-05	-0.63525	-0.00031161	-0.76812	-0.00037679	490.5393035037397	51.803	0.35559	51.803	51.575	51.93	0	-0.068217	-0.0003611	NaN	2.6312	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3092300	+		52178	28208	37919	38223							-0.11863792995995937
SYYVPHDC	8	Unmodified	_SYYVPHDC_					0	0	0			REV__NFX1|p.H784Y|1|0.45|ENSG00000086102|chr9:33347043-33347043|C/T|missense_variant	REV__NFX1|p.H784Y|1|0.45|ENSG00000086102|chr9:33347043-33347043|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	492.17120361328125	2	492.20001	982.385467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.379	1	81.379	80.879	81.879	0								0	0	0	0.16876	1	29738	29738		9.3474	3.587	1		+		52179	27598	37920	38224	50957	50957					-0.10643000176412443
SYYYPQEY	8	Unmodified	_SYYYPQEY_					0	0	0			REV__ENSG00000188037|ENST00000343257|CLCN1	REV__ENSG00000188037|ENST00000343257|CLCN1	MULTI-SECPEP	A375_MHC_IP_R1	1	556.192626953125	2	556.732197	1111.44984	-0.6867	-0.00038231	1.0091	0.00056181	0.32242	0.0001795	556.7326771139949	68.541	0.5593	68.541	68.209	68.769	0					16	10	2	0	0	0	0.972	1	24926	24926		8.5933	6.5335	1	1795300	+		52180	22067	37921	38225	50958	50958					-0.10142521818625028
TAACRFYY	8	Unmodified	_TAACRFYY_					0	0	0		ENSG00000175514|ENST00000312457|GPR152;GPR152|p.V113Afs*217|1|0.08|ENSG00000175514|chr11:67452387-67452388|-/G|frameshift_variant	ENSG00000175514|ENST00000312457|GPR152	ENSG00000175514|ENST00000312457|GPR152	MSMS	A375_MHC_IP_R2	2	497.6685791015625	2	497.726195	993.437837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.934	1	27.594	27.094	28.094	0.65992								0	0	0	0.16876	1	9152	9152		14.582	2.9414	1				52181	7967	37922	38226	50959	50959					-0.05914417042799869
TAADIAKRSQ	10	Unmodified	_TAADIAKRSQ_					0	0	0			REV__nc|ENSG00000101447|Q9H4H8-2|FAM83D	REV__nc|ENSG00000101447|Q9H4H8-2|FAM83D	MULTI-SECPEP	A375_MHC_IP_R2	2	530.6456909179688	2	530.790912	1059.56727	-0.77816	-0.00041304	3.346	0.001776	2.5679	0.001363	531.2935826449901	55.646	0.71182	56.396	56.237	56.949	0.75075					17	13	2	0	0	0	0.87163	1	21160	21160		13.906	0	1	1965000	+		52182	17172	37923	38227	50960	50960					0.03987055840843823
TAADIFKQY	9	Unmodified	_TAADIFKQY_					0	0	0		ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2	ENSG00000101972|ENST00000371145|STAG2	ENSG00000101972|ENST00000371145|STAG2	MULTI-MSMS	A375_MHC_IP_R2	2	529.6724853515625	2	528.771657	1055.52876	-0.53484	-0.00028281	-0.065984	-3.489E-05	-0.60082	-0.0003177	528.7715345783827	62.877	1.0116	63.619	63.13	64.142	0.74263					50	19	4	0	0	0	0.27064	1	23916	23916		32.786	10.049	1	12557000			52183	2340	37924	38228	50961	50961					0.00321750206330762
TAADLLQAKQ	10	Unmodified	_TAADLLQAKQ_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-SECPEP	A375_MHC_IP_R2	2	529.1708374023438	2	529.795663	1057.57677	-0.80129	-0.00042452	-0.62251	-0.0003298	-1.4238	-0.00075432	529.7956341627904	62.079	1.3646	62.822	62.27	63.634	0.74263					28	26	2	0	0	0	0.78945	1	23777	23777		19.257	2.1441	1	1014000			52184	4108	37925	38229	50962	50962					0.05028824126361542
TAADTGHC	8	Unmodified	_TAADTGHC_					0	0	0		ENST00000535641.5_1_12:121765331-121765427:-|nuORF	ENST00000535641.5_1_12:121765331-121765427:-|nuORF	ENST00000535641.5_1_12:121765331-121765427:-|nuORF	MSMS	A375_MHC_IP_R1	1	388.2425842285156	2	388.155603	774.296652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.666	1	18.666	18.166	19.166	0								0	0	0	0.16876	1	4465	4465		0.79363	0	1				52185	13230	37926	38230	50963	50963					-0.09952415416080385
TAADTGHC	8	Unmodified	_TAADTGHC_					0	0	0		ENST00000535641.5_1_12:121765331-121765427:-|nuORF	ENST00000535641.5_1_12:121765331-121765427:-|nuORF	ENST00000535641.5_1_12:121765331-121765427:-|nuORF	MSMS	A375_MHC_IP_R2	2	388.2429504394531	2	388.155603	774.296652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.382	1	17.978	17.478	18.478	0.59616								0	0	0	0.16876	1	5107	5107		0.79363	0	1				52186	13230	37926	38230	50964	50964					-0.09952415416080385
TAADVVKQW	9	Unmodified	_TAADVVKQW_					0	0	0		ENSG00000017797|ENST00000383432|RALBP1	ENSG00000017797|ENST00000383432|RALBP1	ENSG00000017797|ENST00000383432|RALBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	509.67181396484375	2	509.271824	1016.5291	-0.27141	-0.00013822	-0.0058178	-2.9628E-06	-0.27723	-0.00014119	509.2718331378647	51.536	0.45664	51.536	51.322	51.778	0					14	8	2	0	0	0	0.11849	1	18310	18310		53.404	42.58	1	2148600			52187	1043	37927	38231	50965	50965					0.021491699261900976
TAADVVKQW	9	Unmodified	_TAADVVKQW_					0	0	0		ENSG00000017797|ENST00000383432|RALBP1	ENSG00000017797|ENST00000383432|RALBP1	ENSG00000017797|ENST00000383432|RALBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	509.6715087890625	2	509.271824	1016.5291	-0.84066	-0.00042812	0.060612	3.0868E-05	-0.78005	-0.00039726	509.2717262922691	50.784	0.40312	51.538	51.361	51.765	0.75406					12	7	2	0	0	0	0.11849	1	19129	19129		61.602	45.755	1	2933600			52188	1043	37927	38231	50966	50966					0.021491699261900976
TAAEPAPELPV	11	Unmodified	_TAAEPAPELPV_					0	0	0			REV__ENSG00000107816|ENST00000454422|LZTS2	REV__ENSG00000107816|ENST00000454422|LZTS2	MULTI-SECPEP	A375_MHC_IP_R1	1	364.96929931640625	3	365.529123	1093.56554	0.16778	6.1328E-05	0.45812	0.00016746	0.6259	0.00022879	365.529310658356	28.82	0.50602	28.82	28.541	29.047	0					13	9	2	0	0	0	0.95991	1	8926	8926		2.4348	0	1	2132100	+		52189	17499	37928	38232	50967	50967					0.022500020322240744
TAAERWLS	8	Unmodified	_TAAERWLS_					0	0	0			REV__ENSG00000134247|ENST00000393203|PTGFRN	REV__ENSG00000134247|ENST00000393203|PTGFRN	MULTI-SECPEP	A375_MHC_IP_R2	2	467.6424865722656	2	467.243067	932.47158	-0.67229	-0.00031412	1.4935	0.00069782	0.8212	0.0003837	467.2433121539191	39.673	0.86235	40.447	40.118	40.98	0.77451					29	16	3	0	0	0	0.84294	1	14651	14651		37.974	1.847	1	8061400	+		52190	18761	37929	38233	50968	50968					0.0026432772061752985
TAAFCHDIDH	10	Unmodified	_TAAFCHDIDH_					0	0	0		ENST00000508173.5_1_5:149240460-149276122:-|nuORF;ENSG00000132915|ENST00000255266|PDE6A	ENST00000508173.5_1_5:149240460-149276122:-|nuORF	ENST00000508173.5_1_5:149240460-149276122:-|nuORF	MSMS	A375_MHC_IP_R1	1	565.1946411132812	2	565.240198	1128.46584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.694	1	98.694	98.194	99.194	0								0	0	0	0.15158	1	36259	36259		14.838	0.93222	1				52191	4463	37930	38234	50969	50969					-0.09325138853364479
TAAFWTRLY	9	Unmodified	_TAAFWTRLY_					0	0	0		nc|ENSG00000224831|Q1AE95|TMEM183BP;ENSG00000163444|ENST00000367242|TMEM183A;ENST00000463015.1_1_1:202977868-202984294:+|nuORF;nc|ENSG00000163444|Q8IXX5-2|TMEM183A	nc|ENSG00000224831|Q1AE95|TMEM183BP	nc|ENSG00000224831|Q1AE95|TMEM183BP	MULTI-SECPEP	A375_MHC_IP_R1	1	565.1946411132812	2	564.795466	1127.57638	-0.38969	-0.00022009	0.053495	3.0214E-05	-0.33619	-0.00018988	564.7952883730349	98.803	1.0183	98.803	98.455	99.473	0					61	19	6	0	0	0	0.18869	1	36259	36259		59.368	28.1	1	10357000			52192	6663	37931	38235	50970	50970					0.01769449197195172
TAAFWTRLY	9	Unmodified	_TAAFWTRLY_					0	0	0		nc|ENSG00000224831|Q1AE95|TMEM183BP;ENSG00000163444|ENST00000367242|TMEM183A;ENST00000463015.1_1_1:202977868-202984294:+|nuORF;nc|ENSG00000163444|Q8IXX5-2|TMEM183A	nc|ENSG00000224831|Q1AE95|TMEM183BP	nc|ENSG00000224831|Q1AE95|TMEM183BP	MULTI-SECPEP	A375_MHC_IP_R2	2	564.6717529296875	2	564.795466	1127.57638	-0.52383	-0.00029586	0.23253	0.00013133	-0.2913	-0.00016453	564.7955718107212	97.925	1.0182	98.683	98.383	99.401	0.75736					43	19	4	0	0	0	0.059502	1	37155	37155		107.1	43.139	1	9185000			52193	6663	37931	38235	50971	50971					0.01769449197195172
TAAGAFPCLCW	11	Unmodified	_TAAGAFPCLCW_					0	0	0			REV__ENST00000461696.1_1_3:15838904-15839003:-|nuORF	REV__ENST00000461696.1_1_3:15838904-15839003:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	570.9671630859375	2	570.254262	1138.49397	-0.35309	-0.00020135	-1.2456	-0.00071033	-1.5987	-0.00091168	570.2533119598324	58.234	0.8631	58.234	57.873	58.736	0					26	16	3	0	0	0	0.82225	1	21038	21038		22.736	9.6938	1	1546800	+		52194	24979	37932	38236	50972	50972					-0.06973532197639543
TAAILSFLL	9	Unmodified	_TAAILSFLL_					0	0	0		ENSG00000134780|ENST00000257215|DAGLA	ENSG00000134780|ENST00000257215|DAGLA	ENSG00000134780|ENST00000257215|DAGLA	MULTI-SECPEP	A375_MHC_IP_R2	2	948.9204711914062	1	948.576445	947.569169	-0.19601	-0.00018593	0.15541	0.00014742	-0.040605	-3.8517E-05	948.5769906938953	130.13	0.35324	130.34	130.05	130.4	0.2142					8	6	2	0	0	0	0.65246	1	51054	51054		15.847	0	1	2762000			52195	4609	37933	38237	50973	50973					0.09328716596769482
TAAKQERKF	9	Unmodified	_TAAKQERKF_					0	0	0			REV__nc|ENSG00000148680|P34969-3|HTR7	REV__nc|ENSG00000148680|P34969-3|HTR7	MULTI-SECPEP	A375_MHC_IP_R1	1	540.1888427734375	2	539.803823	1077.59309	-0.66744	-0.00036029	0.84145	0.00045422	0.17401	9.3931E-05	539.8042408960317	36.164	0.45726	36.164	35.881	36.339	0					16	8	3	0	0	0	0.73363	1	12150	12150		6.7232	0.51738	1	3757600	+		52196	19642	37934	38238	50974	50974					0.057399500831252226
TAALCRLRL	9	Unmodified	_TAALCRLRL_					0	0	0			REV__ENSG00000281991|ENST00000615541|TMEM265	REV__ENSG00000281991|ENST00000615541|TMEM265	MULTI-SECPEP	A375_MHC_IP_R2	2	508.9313049316406	2	508.805311	1015.59607	-0.76024	-0.00038681	-1.0845	-0.00055182	-1.8448	-0.00093863	509.30786072282984	31.843	0.35442	32.58	32.3	32.654	0.73692					11	6	2	0	0	0	0.73363	1	11233	11233		6.7232	1.4263	1	1268800	+		52197	22992	37935	38239	50975	50975					0.08889501936266697
TAALKGLSSI	10	Unmodified	_TAALKGLSSI_					0	0	0		ENST00000405409.6_2_22:36206049-36236338:-|nuORF;ENST00000397305.3_1_22:36232463-36236338:-|nuORF	ENST00000405409.6_2_22:36206049-36236338:-|nuORF	ENST00000405409.6_2_22:36206049-36236338:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	480.116455078125	2	480.78985	959.565146	-0.76385	-0.00036725	0.3837	0.00018448	-0.38014	-0.00018277	480.79009136839466	40.841	0.30634	41.615	41.386	41.692	0.77451					9	5	2	0	0	0	0.85226	1	15148	15148		3.2813	0.70383	1	1052900			52198	11503	37936	38240	50976	50976					0.0837462710304635
TAALKLLRLA	10	Unmodified	_TAALKLLRLA_					0	0	0			REV__ENST00000497536.1_1_2:240960593-240964718:-|nuORF	REV__ENST00000497536.1_1_2:240960593-240964718:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	356.60479736328125	3	357.241248	1068.70191	-0.24074	-8.6003E-05	-0.12943	-4.6238E-05	-0.37017	-0.00013224	357.24105891136094	32.328	0.30476	33.065	32.909	33.213	0.73691					11	5	3	0	0	0	0.94707	1	11469	11469		3.3196	0.82116	1	1117700	+		52199	18539	37937	38241	50977	50977					0.1703116105340996
TAALLATNH	9	Unmodified	_TAALLATNH_					0	0	0			REV__nc|ENSG00000119723|Q9Y2Z9-3|COQ6	REV__nc|ENSG00000119723|Q9Y2Z9-3|COQ6	MSMS	A375_MHC_IP_R2	2	456.1838684082031	2	456.250892	910.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.064	1	73.8	73.3	74.3	0.73541								0	0	0	0.15411	1	27734	27734		14.838	0	1		+		52200	18092	37938	38242	50978	50978					0.028406142376525167
TAALTSPSPV	10	Unmodified	_TAALTSPSPV_					0	0	0			REV__JPH1|p.Q529Sfs*27|1|0.19|ENSG00000104369|chr8:74244849-74244849|G/-|frameshift_variant	REV__JPH1|p.Q529Sfs*27|1|0.19|ENSG00000104369|chr8:74244849-74244849|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	472.657958984375	2	472.258382	942.502212	-0.72548	-0.00034261	0.57698	0.00027248	-0.1485	-7.0129E-05	472.2584771378047	30.088	0.40588	30.806	30.658	31.064	0.71857					12	7	2	0	0	0	0.48072	1	10583	10583		24.021	2.4836	1	1502400	+		52201	26815	37939	38243	50979	50979					0.02866061315000934
TAANAKHNGVG	11	Unmodified	_TAANAKHNGVG_					0	0	0			REV__ENST00000577174.1_1_16:10934243-10934807:-|nuORF	REV__ENST00000577174.1_1_16:10934243-10934807:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1040.071044921875	1	1039.52793	1038.52066	0.43297	0.00045008	1.6252	0.0016894	2.0581	0.0021395	1039.5287082244156	126.38	0.25353	126.38	126.15	126.41	0					5	4	2	0	0	0	0.98303	1	48269	48269		12.873	0	1	3964000	+		52202	26317	37940	38244	50980	50980					0.002936160095487139
TAAPGRFSF	9	Unmodified	_TAAPGRFSF_					0	0	0		ENST00000565758.1_1_16:30441199-30441310:-|nuORF;ENSG00000179958|ENST00000319285|DCTPP1	ENST00000565758.1_1_16:30441199-30441310:-|nuORF	ENST00000565758.1_1_16:30441199-30441310:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	477.6453552246094	2	477.245609	952.476666	-0.45923	-0.00021916	-0.0082423	-3.9336E-06	-0.46747	-0.0002231	477.24556734412994	55.558	1.4223	55.558	55.177	56.599	0					70	27	4	0	0	0	0.030891	2	19817	19817;20038		74.2	32.105	1	72478000			52203	8269	37941	38245	50981;50982	50981					-0.0014736841676494805
TAAPGRFSF	9	Unmodified	_TAAPGRFSF_					0	0	0		ENST00000565758.1_1_16:30441199-30441310:-|nuORF;ENSG00000179958|ENST00000319285|DCTPP1	ENST00000565758.1_1_16:30441199-30441310:-|nuORF	ENST00000565758.1_1_16:30441199-30441310:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	477.64532470703125	2	477.245609	952.476666	-0.712	-0.0003398	0.037542	1.7917E-05	-0.67445	-0.00032188	477.2455956202005	54.748	1.7298	55.499	55.118	56.848	0.75075					84	33	5	0	0	0	0.04699	2	20590	20590;20838		65.474	31.371	1	77982000			52204	8269	37941	38245	50983;50984	50983					-0.0014736841676494805
TAAPPKANF	9	Unmodified	_TAAPPKANF_					0	0	0		ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	MULTI-SECPEP	A375_MHC_IP_R1	1	459.1478271484375	2	458.747985	915.481417	-0.63266	-0.00029023	0.5157	0.00023658	-0.11696	-5.3654E-05	458.748091392645	29.14	0.70842	29.14	28.745	29.453	0					32	13	3	0	0	0	0.10103	1	9030	9030		71.922	23.576	1	9157100			52205	3881	37942	38246	50985	50985					0.020295157259852203
TAAPPKANF	9	Unmodified	_TAAPPKANF_					0	0	0		ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	MULTI-SECPEP	A375_MHC_IP_R2	2	459.1474609375	2	458.747985	915.481417	-0.83853	-0.00038467	0.08257	3.7879E-05	-0.75596	-0.00034679	458.7480132389021	28.591	0.60617	29.289	28.828	29.434	0.69872					20	11	2	0	0	0	0.10103	1	9789	9789		62.573	22.615	1	13356000			52206	3881	37942	38246	50986	50986					0.020295157259852203
TAAPSPSLLY	10	Unmodified	_TAAPSPSLLY_					0	0	0		nc|ENSG00000101191|Q9BTC0-1|DIDO1;ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-2|DIDO1;nc|ENSG00000101191|Q9BTC0-3|DIDO1	nc|ENSG00000101191|Q9BTC0-1|DIDO1	nc|ENSG00000101191|Q9BTC0-1|DIDO1	MULTI-MSMS	A375_MHC_IP_R1	1	1021.4783325195312	1	1019.54079	1018.53351	0.30244	0.00030835	-0.64536	-0.00065797	-0.34292	-0.00034962	1019.5401782212026	105.53	5.393	105.53	104.74	110.14	0					282	105	6	0	0	0	0.30274	1	39132	39132		39.957	7.6518	1	4663000000			52207	2268	37943	38247	50987	50987					0.024986343491036678
TAAPSPSLLY	10	Unmodified	_TAAPSPSLLY_					0	0	0		nc|ENSG00000101191|Q9BTC0-1|DIDO1;ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-2|DIDO1;nc|ENSG00000101191|Q9BTC0-3|DIDO1	nc|ENSG00000101191|Q9BTC0-1|DIDO1	nc|ENSG00000101191|Q9BTC0-1|DIDO1	MULTI-SECPEP	A375_MHC_IP_R1	1	1020.146240234375	1	1019.54079	1018.53351	0.21838	0.00022265	-1.7448	-0.0017789	-1.5264	-0.0015563	1019.5404029375974	103.39	1.8772	103.39	102.2	104.08	0					46	36	2	0	0	0	0.69172	1	37874	37874		25.399	0	1	1510800			52208	2268	37943	38247	50988	50988					0.024986343491036678
TAAPSPSLLY	10	Unmodified	_TAAPSPSLLY_					0	0	0		nc|ENSG00000101191|Q9BTC0-1|DIDO1;ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-2|DIDO1;nc|ENSG00000101191|Q9BTC0-3|DIDO1	nc|ENSG00000101191|Q9BTC0-1|DIDO1	nc|ENSG00000101191|Q9BTC0-1|DIDO1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	1019.54079	1018.53351	0.090066	9.1826E-05	-0.85878	-0.00087557	-0.76872	-0.00078374	1019.5399454591653	104.72	4.9432	105.49	104.9	109.84	0.76308	-0.020735	-0.00011221	NaN	39.957	281	96	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4902800000			52209	2268	37943	38247							0.024986343491036678
TAAPYHMTFAY	11	Unmodified	_TAAPYHMTFAY_					0	0	0			REV__ENSG00000162992|ENST00000295108|NEUROD1	REV__ENSG00000162992|ENST00000295108|NEUROD1	MULTI-SECPEP	A375_MHC_IP_R2	2	637.1719360351562	2	636.789524	1271.56449	-0.61059	-0.00038882	-1.3095	-0.00083385	-1.9201	-0.0012227	637.2900932801288	46.801	0.40608	47.562	47.258	47.664	0.76127					12	7	2	0	0	0	0.95991	1	17539	17539		8.7454	0	1	1298200	+		52210	20327	37944	38248	50989	50989					-0.060425356083214865
TAAQITQRKW	10	Unmodified	_TAAQITQRKW_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	A375_MHC_IP_R1	1	401.95941162109375	3	401.559528	1201.65676	-0.40429	-0.00016235	0.29813	0.00011972	-0.10616	-4.2628E-05	401.55962072128375	27.407	0.80915	27.407	27.128	27.937	0					41	15	4	0	0	0	0.0156	1	8291	8291		88.576	63.694	1	29459000			52211	9742	37945	38249	50990	50990					0.06399310520237123
TAAQITQRKW	10	Unmodified	_TAAQITQRKW_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	A375_MHC_IP_R1	1	602.2355346679688	2	601.835654	1201.65676	-0.43346	-0.00026087	-0.13515	-8.1338E-05	-0.56861	-0.00034221	601.8356330929952	27.413	0.40417	27.413	27.229	27.634	0					18	7	3	0	0	0	0.00047134	1	8314	8314		180.74	136.88	1	10163000			52212	9742	37945	38249	50991	50991					0.06399310520237123
TAAQITQRKW	10	Unmodified	_TAAQITQRKW_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	A375_MHC_IP_R2	2	401.9591369628906	3	401.559528	1201.65676	-0.30869	-0.00012396	-0.050307	-2.0201E-05	-0.359	-0.00014416	401.5594839708638	26.728	0.66426	27.388	27.109	27.773	0.65992					37	12	4	0	0	0	0.011603	1	9053	9053		115.82	81.6	1	31023000			52213	9742	37945	38249	50992	50992					0.06399310520237123
TAAQITQRKW	10	Unmodified	_TAAQITQRKW_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	A375_MHC_IP_R2	2	602.2352905273438	2	601.835654	1201.65676	-0.77501	-0.00046643	0.00081038	4.8771E-07	-0.7742	-0.00046594	601.8356832458076	26.753	0.61314	27.413	27.212	27.825	0.65992					21	11	3	0	0	0	0.0018454	1	9069	9069		168.9	132.78	1	7331900			52214	9742	37945	38249	50993	50993					0.06399310520237123
TAAQVARVL	9	Unmodified	_TAAQVARVL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q831Sfs*11|1|0.38|ENSG00000125107|chr16:58555897-58555898|-/A|frameshift_variant	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	A375_MHC_IP_R1	1	465.1820983886719	2	464.782359	927.550165	-0.095138	-4.4219E-05	-0.29616	-0.00013765	-0.3913	-0.00018187	464.78216602677935	42.457	0.96276	42.457	42.183	43.146	0					37	18	3	0	0	0	0.010998	1	14680	14680		126.57	34.074	1	13633000			52215	3941	37946	38250	50994	50994					0.08349180025709302
TAAQVARVL	9	Unmodified	_TAAQVARVL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q831Sfs*11|1|0.38|ENSG00000125107|chr16:58555897-58555898|-/A|frameshift_variant	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	A375_MHC_IP_R2	2	465.1820068359375	2	464.782359	927.550165	-0.72286	-0.00033597	0.11542	5.3647E-05	-0.60744	-0.00028233	464.7823812048586	41.503	0.71179	42.277	42.047	42.759	0.77451					33	13	3	0	0	0	0.011236	1	15389	15389		118.07	21.957	1	13592000			52216	3941	37946	38250	50995	50995					0.08349180025709302
TAARSIARV	9	Unmodified	_TAARSIARV_					0	0	0			REV__ENST00000474148.5_1_2:234160473-234181699:+|nuORF	REV__ENST00000474148.5_1_2:234160473-234181699:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	472.1900329589844	2	472.785433	943.556313	-0.64192	-0.00030349	-0.69204	-0.00032719	-1.334	-0.00063068	472.78521609942726	85.276	0.56033	85.276	85.056	85.616	0					14	10	2	0	0	0	0.63327	1	31248	31248		8.7454	0	1	1049300	+		52217	16846	37947	38251	50996	50996					0.08227698257223892
TAARVEATL	9	Unmodified	_TAARVEATL_					0	0	0			REV__ENST00000347624.3_1_3:194078628-194078922:-|nuORF	REV__ENST00000347624.3_1_3:194078628-194078922:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	466.66339111328125	2	466.263999	930.513445	-0.87075	-0.000406	1.322	0.00061638	0.45121	0.00021038	466.26396253552986	40.91	0.66058	41.684	41.438	42.098	0.77451					20	12	3	0	0	0	0.16595	1	15188	15188		53.404	8.997	1	2473900	+		52218	23782	37948	38252	50997	50997					0.04540883409140406
TAASRLVTL	9	Unmodified	_TAASRLVTL_					0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-SECPEP	A375_MHC_IP_R1	1	466.6824035644531	2	466.282192	930.549831	-0.17159	-8.0008E-05	1.1723	0.00054663	1.0007	0.00046662	466.28295951799697	53.573	0.91242	53.573	53.301	54.213	0					30	17	3	0	0	0	0.053555	1	19086	19086		80.676	28.408	1	6667300			52219	3668	37949	38253	50998	50998					0.08177760305852644
TAASRLVTL	9	Unmodified	_TAASRLVTL_					0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-SECPEP	A375_MHC_IP_R2	2	466.6819152832031	2	466.282192	930.549831	-1.1128	-0.00051889	0.45425	0.00021181	-0.65857	-0.00030708	466.2823933229839	52.597	0.55609	53.35	53.083	53.639	0.75225					24	10	3	0	0	0	0.03341	1	19828	19828		93.166	40.898	1	7685300			52220	3668	37949	38253	50999	50999					0.08177760305852644
TAATETRSF	9	Unmodified	_TAATETRSF_					0	0	0		ENST00000496303.5_1_7:4831462-4831723:+|nuORF	ENST00000496303.5_1_7:4831462-4831723:+|nuORF	ENST00000496303.5_1_7:4831462-4831723:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	491.462890625	2	492.243264	982.471974	-0.4174	-0.00020546	0.20284	9.9847E-05	-0.21456	-0.00010561	492.24315135839396	33.165	0.35305	33.165	32.989	33.342	0					10	6	2	0	0	0	0.78798	1	10873	10873		3.9444	2.4625	1	1733100			52221	12722	37950	38254	51000	51000					-0.019962973501833403
TAATETRSF	9	Unmodified	_TAATETRSF_					0	0	0		ENST00000496303.5_1_7:4831462-4831723:+|nuORF	ENST00000496303.5_1_7:4831462-4831723:+|nuORF	ENST00000496303.5_1_7:4831462-4831723:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	492.243264	982.471974	-0.55507	-0.00027323	-0.77338	-0.00038069	-1.3284	-0.00065392	492.24284435333374	32.435	0.25495	33.172	33.01	33.265	0.73692	0.0035945	-0.00059371	NaN	3.9444	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	987040			52222	12722	37950	38254							-0.019962973501833403
TAAVPYRLL	9	Unmodified	_TAAVPYRLL_					0	0	0		ENST00000525137.1_2_11:71146423-71148912:-|nuORF;ENSG00000172893|ENST00000355527|DHCR7	ENST00000525137.1_2_11:71146423-71148912:-|nuORF	ENST00000525137.1_2_11:71146423-71148912:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.2039794921875	2	502.300384	1002.58622	-0.37208	-0.00018689	3.3893	0.0017025	3.0172	0.0015156	502.30323339021203	75.221	0.45446	75.221	74.958	75.413	0					11	8	2	0	0	0	0.65246	1	27438	27438		6.7232	2.7788	1	1308500			52223	7744	37951	38255	51001	51001					0.08502637202559526
TAAYRHLE	8	Unmodified	_TAAYRHLE_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-MSMS	A375_MHC_IP_R2	2	481.14794921875	2	480.748516	959.482479	-0.93181	-0.00044797	0.37834	0.00018188	-0.55347	-0.00026608	480.748474043156	53.955	0.46146	54.706	54.505	54.967	0.75105					12	8	2	0	0	0	0.62444	1	20389	20389		43.858	3.901	1	2008900			52224	8944	37952	38256	51002	51002					0.0011173009489766628
TAAYRHLE	8	Unmodified	_TAAYRHLE_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	480.748516	959.482479	-0.93181	-0.00044797	0.37834	0.00018188	-0.55347	-0.00026608	480.748474043156	53.955	0.46146	54.706	54.505	54.967	0.75105	-0.045168	0.00010196	NaN	43.858	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2008900			52225	8944	37952	38256							0.0011173009489766628
TACCPPECCSE	11	Unmodified	_TACCPPECCSE_					0	0	0			REV__ENSG00000212935|ENST00000391620|KRTAP10-3	REV__ENSG00000212935|ENST00000391620|KRTAP10-3	MULTI-MSMS	A375_MHC_IP_R2	2	572.1685180664062	2	571.684695	1141.35484	-0.31008	-0.00017727	-0.36055	-0.00020612	-0.67063	-0.00038339	571.6836891405306	107.78	0.15317	108.53	108.46	108.61	0.75436					4	2	2	0	0	0	0.7359	1	40694	40694		3.2813	1.2216	1	535470	+		52226	22608	37953	38257	51003	51003					-0.210186059396392
TACDSTDNSCL	11	Unmodified	_TACDSTDNSCL_					0	0	0			REV__ENSG00000166828|ENST00000300061|SCNN1G	REV__ENSG00000166828|ENST00000300061|SCNN1G	MULTI-SECPEP	A375_MHC_IP_R1	1	1128.8121337890625	1	1129.41362	1128.40634	0.30327	0.00034252	-2.8108	-0.0031745	-2.5075	-0.002832	1130.413000955145	108	0.35543	108	107.7	108.05	0					8	6	2	0	0	0	0.99606	1	39564	39564		0.30703	0	1	4790700	+		52227	20705	37954	38258	51004	51004					-0.15272822649717455
TACIIAIKK	9	Unmodified	_TACIIAIKK_					0	0	0			REV__tr|U7SQV1|U7SQV1_FUSNUPhosphoenolpyruvatecarboxykinase(ATP)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=pckAPE=3SV=1	REV__tr|U7SQV1|U7SQV1_FUSNUPhosphoenolpyruvatecarboxykinase(ATP)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=pckAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	480.63226318359375	2	480.799163	959.583773	-0.63892	-0.00030719	0.13298	6.3936E-05	-0.50594	-0.00024325	480.79919733623785	32.826	0.30521	33.563	33.468	33.773	0.73691					8	5	2	0	0	0	0.8028	1	11731	11731		4.3292	1.44	1	898900	+		52228	28385	37955	38259	51005	51005					0.10236465473246881
TACSCEACSE	10	Unmodified	_TACSCEACSE_					0	0	0		ENSG00000125386|ENST00000637812|FAM193A	ENSG00000125386|ENST00000637812|FAM193A	ENSG00000125386|ENST00000637812|FAM193A	MSMS	A375_MHC_IP_R2	2	502.18426513671875	2	502.16191	1002.30927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.364	1	80.108	79.608	80.608	0.74474								0	0	0	0.15531	1	30117	30117		3.5965	1.019	1				52229	3957	37956	38260	51006	51006					-0.19179508130355316
TADASTYSSVT	11	Unmodified	_TADASTYSSVT_					0	0	0			REV__ENSG00000034971|ENST00000037502|MYOC	REV__ENSG00000034971|ENST00000037502|MYOC	MULTI-SECPEP	A375_MHC_IP_R2	2	368.5684509277344	3	368.168143	1101.4826	-0.0055211	-2.0327E-06	0.8401	0.0003093	0.83458	0.00030727	368.1684406607926	37.671	0.4605	38.446	38.279	38.739	0.77451					19	8	3	0	0	0	0.9754	1	13812	13812		6.6235	1.2207	1	7418400	+		52230	16314	37957	38261	51007	51007					-0.06408359486431436
TADENSDNPL	10	Unmodified	_TADENSDNPL_					0	0	0		ENSG00000009413|ENST00000368802|REV3L;nc|ENSG00000009413|O60673-2|REV3L	ENSG00000009413|ENST00000368802|REV3L	ENSG00000009413|ENST00000368802|REV3L	MULTI-MSMS	A375_MHC_IP_R1	1	538.629150390625	2	538.23055	1074.44655	-0.4431	-0.00023849	-0.7616	-0.00040991	-1.2047	-0.0006484	538.2298921777542	71.938	0.65556	71.938	71.615	72.271	0					29	12	4	0	0	0	0.70329	1	26124	26124		10.824	10.824	1	7314900			52231	968	37958	38262	51008	51008					-0.08769816663266283
TADENSDNPL	10	Unmodified	_TADENSDNPL_					0	0	0		ENSG00000009413|ENST00000368802|REV3L;nc|ENSG00000009413|O60673-2|REV3L	ENSG00000009413|ENST00000368802|REV3L	ENSG00000009413|ENST00000368802|REV3L	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	538.23055	1074.44655	-0.4431	-0.00023849	-0.7616	-0.00040991	-1.2047	-0.0006484	538.2298921777542	71.938	0.65556	71.938	71.615	72.271	0	-0.0070879	0.00017924	NaN	10.824	29	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7314900			52232	968	37958	38262							-0.08769816663266283
TADETIVAFST	11	Unmodified	_TADETIVAFST_					0	0	0			REV__ENSG00000112706|ENST00000369950|IMPG1	REV__ENSG00000112706|ENST00000369950|IMPG1	MULTI-SECPEP	A375_MHC_IP_R2	2	578.1826782226562	2	577.782418	1153.55028	-0.01327	-7.6673E-06	-0.063963	-3.6957E-05	-0.077233	-4.4624E-05	577.782273143114	47.321	0.66233	48.083	47.664	48.326	0.76128					30	12	3	0	0	0	0.67995	1	17701	17701		32.786	0	1	7053200	+		52233	17750	37959	38263	51009	51009					-0.020349095556412067
TADHNLLLY	9	Unmodified	_TADHNLLLY_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	A375_MHC_IP_R2	2	530.6766357421875	2	530.277106	1058.53966	-0.52109	-0.00027632	-0.53452	-0.00028344	-1.0556	-0.00055977	530.2769235373171	69.522	1.2189	70.256	69.524	70.743	0.73421					70	23	4	0	0	0	0.030038	2	26366	26366;26469		74.929	17.458	1	61647000			52234	8524	37960	38264	51010;51011	51010					0.01273152580643
TADHNLLLY	9	Unmodified	_TADHNLLLY_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	530.277106	1058.53966	-0.44216	-0.00023446	-0.32264	-0.00017109	-0.7648	-0.00040555	530.2770146430049	70.372	0.91757	70.372	69.933	70.85	0	0.05831	0.00011326	NaN	74.929	56	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72211000			52235	8524	37960	38264							0.01273152580643
TADPGQDGCC	10	Unmodified	_TADPGQDGCC_					0	0	0		ENST00000558637.1_1_15:86293743-86293866:-|nuORF	ENST00000558637.1_1_15:86293743-86293866:-|nuORF	ENST00000558637.1_1_15:86293743-86293866:-|nuORF	MSMS	A375_MHC_IP_R2	2	483.6924133300781	2	483.668217	965.321881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.318	1	69.053	68.553	69.553	0.73511								0	0	0	0.15591	1	25889	25889		1.6526	0.17072	1				52236	13470	37961	38265	51012	51012					-0.1621672867581765
TADQYRVY	8	Unmodified	_TADQYRVY_					0	0	0		ENSG00000105668|ENST00000222275|UPK1A;nc|ENSG00000105668|O00322-2|UPK1A	ENSG00000105668|ENST00000222275|UPK1A	ENSG00000105668|ENST00000222275|UPK1A	MULTI-MSMS	A375_MHC_IP_R1	1	510.18670654296875	2	508.245806	1014.47706	-0.30159	-0.00015328	1.6631	0.00084529	1.3616	0.000692	508.2456345742727	42.386	0.80798	42.386	41.982	42.79	0					53	15	5	0	0	0	0.7338	1	14551	14551		24.674	7.7316	1	73203000			52237	2626	37962	38266	51013	51013					-0.029599934875705003
TADTVILEEL	10	Unmodified	_TADTVILEEL_					0	0	0			REV__TNXB|p.T2310I|1|0.41|ENSG00000168477|chr6:32062396-32062396|G/A|missense_variant	REV__TNXB|p.T2310I|1|0.41|ENSG00000168477|chr6:32062396-32062396|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	368.5684509277344	3	368.532533	1102.57577	0.026345	9.7092E-06	1.3387	0.00049334	1.365	0.00050305	368.5331181637391	37.706	0.51219	38.48	38.175	38.687	0.77451					26	9	4	0	0	0	0.71944	1	13812	13812		1.7423	1.7423	1	2602700	+		52238	28149	37963	38267	51014	51014					0.028585649668229962
TADVHGLYY	9	Unmodified	_TADVHGLYY_					0	0	0		ENST00000476493.5_1_1:33099602-33116090:-|nuORF	ENST00000476493.5_1_1:33099602-33116090:-|nuORF	ENST00000476493.5_1_1:33099602-33116090:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	520.1478881835938	2	519.748182	1037.48181	-0.84786	-0.00044067	1.481	0.00076973	0.63311	0.00032906	519.7490274981153	50.258	0.60857	51.012	50.804	51.412	0.75406					19	11	2	0	0	0	0.05755	1	18899	18899		71.134	42.647	1	2940200			52239	12432	37964	38268	51015	51015					-0.03543109344809636
TADYPSIDR	9	Unmodified	_TADYPSIDR_					0	0	0			REV__ENSG00000088179|ENST00000263708|PTPN4	REV__ENSG00000088179|ENST00000263708|PTPN4	MULTI-SECPEP	A375_MHC_IP_R2	2	519.7025146484375	2	519.248546	1036.48254	-0.88423	-0.00045913	0.04635	2.4067E-05	-0.83788	-0.00043507	519.2486363154715	34.794	0.30212	35.557	35.425	35.727	0.76338					12	5	3	0	0	0	0.69507	1	12554	12554		13.906	0	1	1768100	+		52240	16880	37965	38269	51016	51016					-0.03424314695780595
TAECIFFVS	9	Unmodified	_TAECIFFVS_					0	0	0		ENSG00000114638|ENST00000264234|UPK1B	ENSG00000114638|ENST00000264234|UPK1B	ENSG00000114638|ENST00000264234|UPK1B	MSMS	A375_MHC_IP_R2	2	508.6744384765625	2	508.741511	1015.46847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.381	1	32.099	31.599	32.599	0.71857								0	0	0	0.15486	1	11089	11089		11.64	0	1				52241	3232	37966	38270	51017	51017					-0.03864683448409778
TAEDCENVF	9	Unmodified	_TAEDCENVF_					0	0	0		STAG2|p.Y414F|1|0.24|ENSG00000101972|chrX:124056172-124056172|A/T|missense_variant	STAG2|p.Y414F|1|0.24|ENSG00000101972|chrX:124056172-124056172|A/T|missense_variant	STAG2|p.Y414F|1|0.24|ENSG00000101972|chrX:124056172-124056172|A/T|missense_variant	MSMS	A375_MHC_IP_R1	1	514.172607421875	2	514.205489	1026.39643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.098	1	60.098	59.598	60.598	0								0	0	0	0.1535	1	21632	21632		15.847	1.2655	1				52242	29258	37967	38271	51018	51018					-0.11571642592798526
TAEDCENVF	9	Unmodified	_TAEDCENVF_					0	0	0		STAG2|p.Y414F|1|0.24|ENSG00000101972|chrX:124056172-124056172|A/T|missense_variant	STAG2|p.Y414F|1|0.24|ENSG00000101972|chrX:124056172-124056172|A/T|missense_variant	STAG2|p.Y414F|1|0.24|ENSG00000101972|chrX:124056172-124056172|A/T|missense_variant	MSMS	A375_MHC_IP_R2	2	514.1715698242188	2	514.205489	1026.39643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.274	1	60.022	59.522	60.522	0.74714								0	0	0	0.1535	1	22434	22434		15.847	1.2655	1				52243	29258	37967	38271	51019	51019					-0.11571642592798526
TAEDSEIRYL	10	Unmodified	_TAEDSEIRYL_					0	0	0		ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	MULTI-SECPEP	A375_MHC_IP_R1	1	599.193115234375	2	598.793318	1195.57208	-0.56258	-0.00033687	0.24401	0.00014611	-0.31857	-0.00019076	598.7933998462225	28.086	0.65452	28.086	27.887	28.541	0					40	12	5	0	0	0	0.63289	1	8597	8597		47.749	47.749	1	42031000			52244	3967	37968	38272	51020	51020					-0.017881048070421457
TAEDSEIRYL	10	Unmodified	_TAEDSEIRYL_					0	0	0		ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	MULTI-MATCH	A375_MHC_IP_R2	2		2	598.793318	1195.57208	-0.47863	-0.0002866	0.066844	4.0026E-05	-0.41178	-0.00024657	598.7933332404848	27.496	0.5572	28.174	27.945	28.502	0.67857	0.044147	-0.00010404	NaN	47.749	34	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47762000			52245	3967	37968	38272							-0.017881048070421457
TAEEDFPKV	9	Unmodified	_TAEEDFPKV_					0	0	0		ENST00000299980.8_2_16:71766487-71766874:-|nuORF	ENST00000299980.8_2_16:71766487-71766874:-|nuORF	ENST00000299980.8_2_16:71766487-71766874:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	518.203369140625	2	518.253297	1034.49204	-0.66392	-0.00034408	-0.02982	-1.5454E-05	-0.69374	-0.00035953	518.2532127557068	86.806	1.6755	86.806	86.376	88.052	0					80	32	5	0	0	0	0.63811	1	32242	32242		12.532	1.7076	1	51715000			52246	10534	37969	38273	51021	51021					-0.023825464102401384
TAEEDFPKV	9	Unmodified	_TAEEDFPKV_					0	0	0		ENST00000299980.8_2_16:71766487-71766874:-|nuORF	ENST00000299980.8_2_16:71766487-71766874:-|nuORF	ENST00000299980.8_2_16:71766487-71766874:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	518.253297	1034.49204	-0.55307	-0.00028663	0.032197	1.6686E-05	-0.52087	-0.00026994	518.2532220426511	86.183	1.6282	86.916	86.338	87.966	0.733	0.05501	3.4307E-05	NaN	12.532	76	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49689000			52247	10534	37969	38273							-0.023825464102401384
TAEEYAVDH	9	Unmodified	_TAEEYAVDH_					0	0	0			REV__nc|ENSG00000162745|Q68BL8-2|OLFML2B	REV__nc|ENSG00000162745|Q68BL8-2|OLFML2B	MULTI-MSMS	A375_MHC_IP_R2	2	517.6646728515625	2	517.724904	1033.43525	-1.1268	-0.00058335	-0.21468	-0.00011115	-1.3414	-0.0006945	517.7247741187524	24.796	0.86565	25.439	25.212	26.078	0.64368					41	16	4	0	0	0	0.55818	1	8474	8474		16.942	16.942	1	99450000	+		52248	20301	37970	38274	51022	51022					-0.08012593966759596
TAENNDLFNNH	11	Unmodified	_TAENNDLFNNH_					0	0	0			REV__ENSG00000197808|ENST00000588268|ZNF461	REV__ENSG00000197808|ENST00000588268|ZNF461	MULTI-SECPEP	A375_MHC_IP_R2	2	430.5895080566406	3	430.189941	1287.54799	-0.11216	-4.8251E-05	-1.3818	-0.00059442	-1.4939	-0.00064267	430.18960620611665	43.096	0.60767	43.869	43.573	44.181	0.7724					26	11	4	0	0	0	0.99018	1	16043	16043		6.2344	0	1	3212200	+		52249	22317	37971	38275	51023	51023					-0.0842794524069177
TAEPERRL	8	Unmodified	_TAEPERRL_					0	0	0		ENST00000528753.2_2_8:12809156-12809228:+|nuORF	ENST00000528753.2_2_8:12809156-12809228:+|nuORF	ENST00000528753.2_2_8:12809156-12809228:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	485.6370544433594	2	486.267073	970.519593	-0.61536	-0.00029923	0.080074	3.8937E-05	-0.53528	-0.00026029	486.26726205727454	41.514	0.45957	41.514	41.266	41.725	0					14	8	2	0	0	0	0.73227	1	14353	14353		24.021	0	1	1935200			52250	13122	37972	38276	51024	51024					0.03315401640657001
TAETLTDIVL	10	Unmodified	_TAETLTDIVL_					0	0	0		ENST00000464751.6_1_5:137774897-137779354:+|nuORF;ENST00000510467.5_1_5:137774897-137780649:+|nuORF;nc|ENSG00000132563|Q9BRK0|REEP2;ENSG00000132563|ENST00000378339|REEP2	ENST00000464751.6_1_5:137774897-137779354:+|nuORF	ENST00000464751.6_1_5:137774897-137779354:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	538.3255615234375	2	538.297704	1074.58086	-1.1036	-0.00059405	1.093	0.00058836	-0.010586	-5.6982E-06	538.2981534251157	71.422	0.30466	72.156	71.908	72.213	0.73421					7	5	2	0	0	0	0.70329	1	27078	27078		10.824	0	1	795030			52251	4423	37973	38277	51025	51025					0.046548688294251406
TAEYHLDFSSS	11	Unmodified	_TAEYHLDFSSS_					0	0	0			REV__ZKSCAN1|p.H173Y|1|0.37|ENSG00000106261|chr7:100024244-100024244|C/T|missense_variant	REV__ZKSCAN1|p.H173Y|1|0.37|ENSG00000106261|chr7:100024244-100024244|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	628.1666259765625	2	628.775125	1255.5357	-0.63015	-0.00039622	-0.24444	-0.0001537	-0.87459	-0.00054992	628.7748861728776	46.827	0.66118	47.588	47.309	47.97	0.76128					31	12	3	0	0	0	0.52598	1	17562	17562		29.082	0	1	8473000	+		52252	29023	37974	38278	51026	51026					-0.08184981703766425
TAFFFTGH	8	Unmodified	_TAFFFTGH_					0	0	0			REV__ENST00000443864.6_1_7:44664063-44684998:+|nuORF	REV__ENST00000443864.6_1_7:44664063-44684998:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	463.63360595703125	2	464.221603	926.428653	-0.20443	-9.4902E-05	0.13341	6.1934E-05	-0.071018	-3.2968E-05	464.2216572762548	57.376	0.76341	57.376	57.059	57.822	0					26	14	2	0	0	0	0.94479	1	20530	20530		19.439	19.439	1	12734000	+		52253	24830	37975	38279	51027	51027					-0.03750442336809101
TAFPATRNV	9	Unmodified	_TAFPATRNV_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-SECPEP	A375_MHC_IP_R1	1	489.16412353515625	2	488.764166	975.513779	-0.23701	-0.00011584	-0.21727	-0.00010619	-0.45428	-0.00022203	488.7640383752822	34.843	1.2723	34.843	34.557	35.83	0					56	24	3	0	0	0	0.044425	1	11485	11485		87.258	22.023	1	78084000			52254	4092	37976	38280	51028	51028					0.02504303129001073
TAFPATRNV	9	Unmodified	_TAFPATRNV_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	A375_MHC_IP_R2	2	489.16357421875	2	488.764166	975.513779	-0.93458	-0.00045679	-0.0099622	-4.8692E-06	-0.94454	-0.00046166	488.76413187867973	34.167	1.2173	34.919	34.55	35.767	0.75225					56	23	4	0	0	0	0.0095341	2	12222	12222;12495		96.936	31.462	1	62708000			52255	4092	37976	38280	51029;51030	51029					0.02504303129001073
TAFPSPRLL	9	Unmodified	_TAFPSPRLL_					0	0	0		ENSG00000197774|ENST00000568449|EME2;nc|ENSG00000197774|A4GXA9-2|EME2	ENSG00000197774|ENST00000568449|EME2	ENSG00000197774|ENST00000568449|EME2	MULTI-MSMS	A375_MHC_IP_R1	1	501.6925354003906	2	501.292559	1000.57057	-0.23945	-0.00012003	-0.016854	-8.4488E-06	-0.2563	-0.00012848	501.29242767914604	82.036	0.76216	82.036	81.758	82.52	0					22	14	2	0	0	0	0.29123	1	30031	30031		31.268	5.0002	1	3253300			52256	9194	37977	38281	51031	51031					0.07030350685522535
TAFPSPRLL	9	Unmodified	_TAFPSPRLL_					0	0	0		ENSG00000197774|ENST00000568449|EME2;nc|ENSG00000197774|A4GXA9-2|EME2	ENSG00000197774|ENST00000568449|EME2	ENSG00000197774|ENST00000568449|EME2	MULTI-SECPEP	A375_MHC_IP_R2	2	501.6922302246094	2	501.292559	1000.57057	-0.69588	-0.00034884	-0.067273	-3.3724E-05	-0.76315	-0.00038256	501.2925162857918	81.14	0.76044	81.885	81.622	82.383	0.74474					25	14	2	0	0	0	0.24324	1	30843	30843		38.176	9.094	1	2753300			52257	9194	37977	38281	51032	51032					0.07030350685522535
TAFPVRWLL	9	Unmodified	_TAFPVRWLL_					0	0	0		ENST00000432460.1_3_2:219523811-219524039:-|nuORF;ENST00000450765.5_1_2:219523811-219524298:-|nuORF	ENST00000432460.1_3_2:219523811-219524039:-|nuORF	ENST00000432460.1_3_2:219523811-219524039:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	368.5684509277344	3	368.218443	1101.6335	0.018318	6.745E-06	-0.43261	-0.0001593	-0.41429	-0.00015255	368.2181052954041	37.919	0.41087	38.694	38.432	38.843	0.77451					16	7	3	0	0	0	0.78348	1	13812	13812		0.96228	0	1	2271900			52258	11877	37978	38282	51033	51033					0.08674916473569283
TAFYREAPF	9	Unmodified	_TAFYREAPF_					0	0	0		chr6:165909080-165910808|371|11.56|0.61|4.24|-|2|PDE10A,PDE10A|1;ENST00000444465.1_1_6:166322452-166324410:-|nuORF	chr6:165909080-165910808|371|11.56|0.61|4.24|-|2|PDE10A,PDE10A|1	chr6:165909080-165910808|371|11.56|0.61|4.24|-|2|PDE10A,PDE10A|1	MULTI-SECPEP	A375_MHC_IP_R2	2	551.1875	2	551.271824	1100.5291	-0.73284	-0.00040399	1.5027	0.0008284	0.76987	0.00042441	551.2729481724148	67.684	0.66221	68.42	68.104	68.766	0.73631					18	12	2	0	0	0	0.48845	1	25641	25641		30.703	12.568	1	1407300			52259	492	37979	38283	51034	51034					-0.017148300738199396
TAGDDDRGWL	10	Unmodified	_TAGDDDRGWL_					0	0	0		nc|ENSG00000135100|P20823-2|HNF1A	nc|ENSG00000135100|P20823-2|HNF1A	nc|ENSG00000135100|P20823-2|HNF1A	MULTI-SECPEP	A375_MHC_IP_R2	2	552.6774291992188	2	553.249077	1104.4836	-0.70937	-0.00039246	0.099584	5.5095E-05	-0.60978	-0.00033736	553.249054112262	63.861	0.55822	64.602	64.344	64.902	0.74022					16	10	2	0	0	0	0.91556	1	24187	24187		10.074	4.3421	1	1668500			52260	14615	37980	38284	51035	51035					-0.06446100326843407
TAGLTRLSL	9	Unmodified	_TAGLTRLSL_					0	0	0		LHCGR|p.Q82Dfs*2|1|0.09|ENSG00000138039|chr2:48729216-48729217|TG/-|frameshift_variant;nc|ENSG00000138039|P22888-2|LHCGR;ENSG00000138039|ENST00000294954|LHCGR	LHCGR|p.Q82Dfs*2|1|0.09|ENSG00000138039|chr2:48729216-48729217|TG/-|frameshift_variant	LHCGR|p.Q82Dfs*2|1|0.09|ENSG00000138039|chr2:48729216-48729217|TG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	466.66351318359375	2	466.282192	930.549831	-0.38639	-0.00018017	-0.065442	-3.0514E-05	-0.45183	-0.00021068	466.28210018718744	41.897	0.30643	41.897	41.725	42.032	0					7	5	2	0	0	0	0.41434	1	14462	14462		39.95	10.868	1	1313700			52261	4947	37981	38285	51036	51036					0.08177760305852644
TAGLVSVCCCT	11	Unmodified	_TAGLVSVCCCT_					0	0	0		ENST00000592970.1_3_17:40086676-40086784:-|nuORF	ENST00000592970.1_3_17:40086676-40086784:-|nuORF	ENST00000592970.1_3_17:40086676-40086784:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	529.129150390625	2	528.729763	1055.44497	-0.49894	-0.0002638	-1.0909	-0.00057682	-1.5899	-0.00084062	528.7292979246815	73.177	0.76361	73.913	73.633	74.396	0.73541					20	14	2	0	0	0	0.73016	1	27803	27803		8.7454	0.83525	1	1985300			52262	13819	37982	38286	51037	51037					-0.08053188548888102
TAGNGPLV	8	Unmodified	_TAGNGPLV_					0	0	0		ENST00000477638.1_1_10:116354806-116370421:-|nuORF	ENST00000477638.1_1_10:116354806-116370421:-|nuORF	ENST00000477638.1_1_10:116354806-116370421:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	728.7933349609375	1	728.39373	727.386454	-0.26869	-0.00019571	0.0024711	1.7999E-06	-0.26622	-0.00019391	728.3936686217836	48.125	0.65749	48.125	47.768	48.426	0					14	12	2	0	0	0	0.76248	1	16982	16982		16.942	2.104	1	1988600			52263	12445	37983	38287	51038	51038					0.011855822548000106
TAGPEDYD	8	Unmodified	_TAGPEDYD_					0	0	0		RHOB|p.Q63P|1|0.27|ENSG00000143878|chr2:20447653-20447653|A/C|missense_variant	RHOB|p.Q63P|1|0.27|ENSG00000143878|chr2:20447653-20447653|A/C|missense_variant	RHOB|p.Q63P|1|0.27|ENSG00000143878|chr2:20447653-20447653|A/C|missense_variant	MSMS	A375_MHC_IP_R2	2	434.1398010253906	2	434.171973	866.329392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.23	1	58.979	58.479	59.479	0.74894								0	0	0	0.16876	1	22027	22027		5.2307	0.90143	1				52264	29078	37984	38288	51039	51039					-0.10911929812232302
TAGPRLGW	8	Unmodified	_TAGPRLGW_					0	0	0		nc|ENSG00000110841|Q86W92-3|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	MULTI-MSMS	A375_MHC_IP_R1	1	429.63482666015625	2	429.235045	856.455536	0.06781	2.9106E-05	-0.099021	-4.2503E-05	-0.031211	-1.3397E-05	429.23484388668464	53.988	0.55593	53.988	53.758	54.314	0					14	10	2	0	0	0	0.51581	1	19283	19283		48.346	19.859	1	2709100			52265	14540	37985	38289	51040	51040					0.02156666274379404
TAGPRLGW	8	Unmodified	_TAGPRLGW_					0	0	0		nc|ENSG00000110841|Q86W92-3|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	MULTI-MATCH	A375_MHC_IP_R2	2		2	429.235045	856.455536	-0.78325	-0.0003362	-0.078274	-3.3598E-05	-0.86153	-0.0003698	429.2349912941846	53.143	0.50929	53.894	53.638	54.147	0.75105	-0.046718	7.9678E-06	NaN	48.346	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1298300			52266	14540	37985	38289							0.02156666274379404
TAGRPPPR	8	Unmodified	_TAGRPPPR_					0	0	0			REV__ENST00000373511.6_1_9:128200812-128200935:-|nuORF	REV__ENST00000373511.6_1_9:128200812-128200935:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	426.6455993652344	2	426.245944	850.477334	0.11598	4.9434E-05	-0.14077	-6.0001E-05	-0.024792	-1.0567E-05	426.2458829408178	117.13	1.0639	117.13	116.7	117.76	0					33	20	3	0	0	0	0.7773	1	42932	42932		4.756	0	1	22755000	+		52267	24094	37986	38290	51041	51041					0.0461147102294035
TAGRPPPR	8	Unmodified	_TAGRPPPR_					0	0	0			REV__ENST00000373511.6_1_9:128200812-128200935:-|nuORF	REV__ENST00000373511.6_1_9:128200812-128200935:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	426.245944	850.477334	0.11598	4.9434E-05	-0.14077	-6.0001E-05	-0.024792	-1.0567E-05	426.2458829408178	117.13	1.0639	117.13	116.7	117.76	0	-0.025215	3.5489E-05	NaN	4.756	33	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22755000	+		52268	24094	37986	38290							0.0461147102294035
TAGSQRKVVAF	11	Unmodified	_TAGSQRKVVAF_					0	0	0		ENST00000571394.1_1_17:80904781-80918254:-|nuORF;ENSG00000175711|ENST00000320865|B3GNTL1	ENST00000571394.1_1_17:80904781-80918254:-|nuORF	ENST00000571394.1_1_17:80904781-80918254:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	582.1632080078125	2	582.330205	1162.64586	-0.55772	-0.00032477	0.23175	0.00013495	-0.32597	-0.00018982	582.330331068611	30.326	1.0607	30.326	30.099	31.16	0					62	20	5	0	0	0	0.17512	1	9618	9618		70.332	45.341	1	146190000			52269	7978	37987	38291	51042	51042					0.07103908145927562
TAGSQRKVVAF	11	Unmodified	_TAGSQRKVVAF_					0	0	0		ENST00000571394.1_1_17:80904781-80918254:-|nuORF;ENSG00000175711|ENST00000320865|B3GNTL1	ENST00000571394.1_1_17:80904781-80918254:-|nuORF	ENST00000571394.1_1_17:80904781-80918254:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	582.7296142578125	2	582.330205	1162.64586	-0.8415	-0.00049003	0.33415	0.00019458	-0.50735	-0.00029545	582.3303815685848	29.742	0.85925	30.441	30.134	30.993	0.69872					55	16	5	0	0	0	0.059683	1	10353	10353		70.332	45.341	1	126080000			52270	7978	37987	38291	51043	51043					0.07103908145927562
TAGSYRLSVA	10	Unmodified	_TAGSYRLSVA_					0	0	0			REV__ENSG00000158859|ENST00000367996|ADAMTS4	REV__ENSG00000158859|ENST00000367996|ADAMTS4	MULTI-MSMS	A375_MHC_IP_R2	2	1024.544921875	1	1024.54219	1023.53491	-0.01397	-1.4312E-05	-0.48995	-0.00050198	-0.50392	-0.00051629	1024.5416364305356	39.958	0.6091	40.733	40.473	41.082	0.77451					28	11	3	0	0	0	0.30287	1	14843	14843		39.95	0	1	20131000	+		52271	20092	37988	38292	51044	51044					0.024082684378413433
TAGSYRLSVA	10	Unmodified	_TAGSYRLSVA_					0	0	0			REV__ENSG00000158859|ENST00000367996|ADAMTS4	REV__ENSG00000158859|ENST00000367996|ADAMTS4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	1024.54219	1023.53491	-0.01397	-1.4312E-05	-0.48995	-0.00050198	-0.50392	-0.00051629	1024.5416364305356	39.958	0.6091	40.733	40.473	41.082	0.77451	0.049341	-0.00017261	NaN	39.95	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20131000	+		52272	20092	37988	38292							0.024082684378413433
TAGTVLAVGT	10	Unmodified	_TAGTVLAVGT_					0	0	0			REV__ENSG00000162729|ENST00000314485|IGSF8	REV__ENSG00000162729|ENST00000314485|IGSF8	MULTI-SECPEP	A375_MHC_IP_R2	2	444.6685485839844	2	445.2531	888.491647	-0.4343	-0.00019338	1.9047	0.00084805	1.4703	0.00065468	445.2544281393152	40.163	0.30455	40.938	40.828	41.133	0.77451					7	5	2	0	0	0	0.90513	1	14846	14846		4.897	0	1	562920	+		52273	20298	37989	38293	51045	51045					0.04294078660575451
TAGWDQPVT	9	Unmodified	_TAGWDQPVT_					0	0	0		ENST00000320033.4_1_17:41477745-41477949:+|nuORF	ENST00000320033.4_1_17:41477745-41477949:+|nuORF	ENST00000320033.4_1_17:41477745-41477949:+|nuORF	MSMS	A375_MHC_IP_R2	2	487.6761474609375	2	487.732532	973.45051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.524	1	59.273	58.773	59.773	0.74894								0	0	0	0.15486	1	22142	22142		11.64	1.5664	1				52274	10688	37990	38294	51046	51046					-0.03727682378894315
TAHTEAVHPS	10	Unmodified	_TAHTEAVHPS_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.K10017Ifs*3|1|0.07|ENSG00000181143|chr19:8946720-8946721|-/A|frameshift_variant;MUC16|p.L10196Yfs*32|1|0.2|ENSG00000181143|chr19:8946183-8946183|A/-|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	A375_MHC_IP_R2	2	525.7074584960938	2	525.254163	1048.49377	-0.72527	-0.00038095	3.3476	0.0017584	2.6224	0.0013774	525.7584561213174	49.958	0.45895	50.712	50.445	50.904	0.75406					22	8	3	0	0	0	0.57505	1	18795	18795		22.736	4.5899	1	2281000			52275	8335	37991	38295	51047	51047					-0.02853492601616381
TAHYDDDEL	9	Unmodified	_TAHYDDDEL_					0	0	0			REV__ENSG00000138379|ENST00000260950|MSTN	REV__ENSG00000138379|ENST00000260950|MSTN	MULTI-MSMS	A375_MHC_IP_R2	2	539.7194213867188	2	539.719818	1077.42508	-0.69722	-0.0003763	-1.563	-0.00084357	-2.2602	-0.0012199	539.7187401329314	99.124	0.40701	99.883	99.606	100.01	0.75977					11	7	2	0	0	0	0.64808	1	37632	37632		11.64	3.4848	1	1114400	+		52276	19092	37992	38296	51048	51048					-0.11053201692016046
TAHYDDDEL	9	Unmodified	_TAHYDDDEL_					0	0	0			REV__ENSG00000138379|ENST00000260950|MSTN	REV__ENSG00000138379|ENST00000260950|MSTN	MULTI-MATCH	A375_MHC_IP_R1	1		2	539.719818	1077.42508	-0.64976	-0.00035069	-1.5895	-0.00085788	-2.2392	-0.0012086	539.7188481710098	99.878	0.40404	99.878	99.723	100.13	0	-0.0025496	-1.5472E-05	NaN	11.64	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1478400	+		52277	19092	37992	38296							-0.11053201692016046
TAICQRMI	8	Unmodified	_TAICQRMI_					0	0	0			REV__nc|ENSG00000089094|Q8NHM5-5|KDM2B	REV__nc|ENSG00000089094|Q8NHM5-5|KDM2B	MSMS	A375_MHC_IP_R1	1	468.14373779296875	2	468.243698	934.472843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.02	1	128.02	127.52	128.52	0								0	0	0	0.16876	1	49134	49134		32.117	3.6301	1		+		52278	27131	37993	38297	51049	51049					0.002985024935014735
TAIHSPSHP	9	Unmodified	_TAIHSPSHP_					0	0	0			REV__ENST00000505813.1_1_5:110285472-110285946:-|nuORF	REV__ENST00000505813.1_1_5:110285472-110285946:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	473.3026123046875	2	473.740691	945.466829	-0.71735	-0.00033984	-0.053484	-2.5337E-05	-0.77083	-0.00036517	473.7409695784003	26.903	0.29954	26.903	26.728	27.027	0					8	5	2	0	0	0	0.73363	1	8103	8103		10.824	0	1	1546400	+		52279	25542	37994	38298	51050	51050					-0.008085564221460118
TAIHSPSHP	9	Unmodified	_TAIHSPSHP_					0	0	0			REV__ENST00000505813.1_1_5:110285472-110285946:-|nuORF	REV__ENST00000505813.1_1_5:110285472-110285946:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	473.740691	945.466829	-0.95705	-0.00045339	-0.8098	-0.00038364	-1.7669	-0.00083703	473.74075631520014	26.324	0.25242	26.984	26.857	27.109	0.65992	0.040346	-0.00050623	NaN	10.824	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	888510	+		52280	25542	37994	38298							-0.008085564221460118
TAIKFNQLK	9	Unmodified	_TAIKFNQLK_					0	0	0		COLEC12|p.E333K|1|0.46|ENSG00000158270|chr18:346625-346625|C/T|missense_variant	COLEC12|p.E333K|1|0.46|ENSG00000158270|chr18:346625-346625|C/T|missense_variant	COLEC12|p.E333K|1|0.46|ENSG00000158270|chr18:346625-346625|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	354.9220886230469	3	354.88172	1061.62333	0.16219	5.7559E-05	-0.64826	-0.00023006	-0.48607	-0.0001725	354.88148566944494	49.836	0.51025	49.836	49.591	50.101	0					20	9	3	0	0	0	0.64808	1	17685	17685		7.609	2.5614	1	5525000			52281	562	37995	38299	51051	51051					0.09498308748311501
TAIKHRRKY	9	Unmodified	_TAIKHRRKY_					0	0	0		nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-4|TMTC4	nc|ENSG00000125247|Q5T4D3-2|TMTC4	nc|ENSG00000125247|Q5T4D3-2|TMTC4	MULTI-SECPEP	A375_MHC_IP_R1	1	390.9600524902344	3	391.57188	1171.69381	0.13779	5.3955E-05	0.023849	9.3384E-06	0.16164	6.3293E-05	391.57184442075857	20.005	0.60891	20.005	19.674	20.283	0					19	11	2	0	0	0	0.77003	1	5101	5101		4.5289	2.7866	1	2382100			52282	3946	37996	38300	51052	51052					0.11483026856649303
TAIKTWKRD	9	Unmodified	_TAIKTWKRD_					0	0	0			REV__ENSG00000117139|ENST00000367265|KDM5B	REV__ENSG00000117139|ENST00000367265|KDM5B	MULTI-MSMS	A375_MHC_IP_R1	1	1119.5919189453125	1	1118.63167	1117.62439	0.58879	0.00065864	0.73379	0.00082084	1.3226	0.0014795	1119.6334171664926	113.92	0.91702	113.92	113.4	114.31	0					23	17	3	0	0	0	0.73415	1	41753	41753		3.9444	0.3479	1	5258400	+		52283	17995	37997	38301	51053	51053					0.07028523117219265
TAILEQLLY	9	Unmodified	_TAILEQLLY_					0	0	0		ENSG00000197885|ENST00000425478|NKIRAS1	ENSG00000197885|ENST00000425478|NKIRAS1	ENSG00000197885|ENST00000425478|NKIRAS1	MULTI-SECPEP	A375_MHC_IP_R2	2	532.2186279296875	2	532.305332	1062.59611	-0.69231	-0.00036852	-0.89315	-0.00047543	-1.5855	-0.00084395	532.8058444684522	76.741	0.40558	77.482	77.199	77.604	0.74052					11	7	2	0	0	0	0.62767	1	29178	29178		16.942	6.8684	1	1204800			52284	9205	37998	38302	51054	51054					0.0673178041729443
TAIPHHTAP	9	Unmodified	_TAIPHHTAP_					0	0	0			REV__GATA2|p.P247A|1|0.12|ENSG00000179348|chr3:128485859-128485859|G/C|missense_variant	REV__GATA2|p.P247A|1|0.12|ENSG00000179348|chr3:128485859-128485859|G/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	472.2209777832031	2	472.751059	943.487565	-0.25922	-0.00012255	0.072115	3.4093E-05	-0.18711	-8.8454E-05	472.751024645701	45.715	0.55912	45.715	45.484	46.043	0					19	10	3	0	0	0	0.73363	1	15939	15939		6.7232	0	1	4984500	+		52285	26665	37999	38303	51055	51055					0.013560339574951286
TAISLMRKF	9	Unmodified	_TAISLMRKF_					0	0	0		SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000598459.5_1_19:39949480-39950711:+|nuORF	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	355.94927978515625	3	356.207438	1065.60049	0.052702	1.8773E-05	-0.57718	-0.0002056	-0.52448	-0.00018682	356.54172889284007	55.61	0.66063	55.61	55.381	56.041	0					17	12	2	0	0	0	0.76106	1	19867	19867		9.544	2.4423	1	1744800			52286	9018	38000	38304	51056	51056					0.07030966359184276
TAISLMRKF	9	Unmodified	_TAISLMRKF_					0	0	0		SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000598459.5_1_19:39949480-39950711:+|nuORF	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	356.6070861816406	3	356.207438	1065.60049	-0.40816	-0.00014539	-0.33058	-0.00011775	-0.73874	-0.00026314	356.2072636417716	54.622	0.50832	55.373	55.118	55.626	0.75075					15	9	2	0	0	0	0.41879	1	20638	20638		23.79	15.634	1	1767600			52287	9018	38000	38304	51057	51057					0.07030966359184276
TAISLMRKF	9	Unmodified	_TAISLMRKF_					0	0	0		SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000598459.5_1_19:39949480-39950711:+|nuORF	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	533.2202758789062	2	533.807519	1065.60049	-0.95684	-0.00051077	1.3846	0.00073912	0.42779	0.00022836	534.3101896561764	54.614	0.30407	55.364	55.169	55.473	0.75075					6	5	2	0	0	0	0.78353	1	20597	20597		5.7319	1.7875	1	936500			52288	9018	38000	38304	51058	51058					0.07030966359184276
TAITIQVSHRK	11	Unmodified	_TAITIQVSHRK_					0	0	0			REV__nc|ENSG00000106868|Q6UWL2-3|SUSD1	REV__nc|ENSG00000106868|Q6UWL2-3|SUSD1	MULTI-SECPEP	A375_MHC_IP_R2	2	627.6834716796875	2	627.369861	1252.72517	-0.76069	-0.00047724	-0.1967	-0.0001234	-0.95739	-0.00060064	627.8729022281832	88.269	0.25223	89.001	88.774	89.026	0.7318					6	4	2	0	0	0	0.99581	1	33558	33558		4.1895	0	1	1100200	+		52289	17470	38001	38305	51059	51059					0.10891555100079131
TAIYRRVIY	9	Unmodified	_TAIYRRVIY_					0	0	0			REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	MULTI-SECPEP	A375_MHC_IP_R2	2	385.24871826171875	3	385.560869	1153.66078	-0.40344	-0.00015555	0.3103	0.00011964	-0.093133	-3.5908E-05	385.56093729722727	19.172	0.45491	19.775	19.633	20.088	0.60308					12	8	2	0	0	0	0.65246	1	5909	5909		7.1017	4.8189	1	1941700	+		52290	20096	38002	38306	51060	51060					0.09009400013951563
TAKCKEKL	8	Unmodified	_TAKCKEKL_					0	0	0			REV__ENSG00000124490|ENST00000339139|CRISP2	REV__ENSG00000124490|ENST00000339139|CRISP2	MULTI-SECPEP	A375_MHC_IP_R2	2	920.1549682617188	1	920.523364	919.516088	-0.10446	-9.6154E-05	-1.1123	-0.0010239	-1.2168	-0.0011201	920.5225967400834	113.19	1.6746	113.9	113.31	114.98	0.70985					61	32	2	0	0	0	0.91495	1	42540	42540		18.135	0	1	110010000	+		52291	18306	38003	38307	51061	51061					0.05311015542451969
TAKEAKIRK	9	Unmodified	_TAKEAKIRK_					0	0	0		ENSG00000121570|ENST00000335658|DPPA4	ENSG00000121570|ENST00000335658|DPPA4	ENSG00000121570|ENST00000335658|DPPA4	MULTI-SECPEP	A375_MHC_IP_R1	1	522.9794311523438	2	522.82984	1043.64513	-0.50158	-0.00026224	-0.01035	-5.4115E-06	-0.51193	-0.00026765	522.8298519668092	34.087	0.30498	34.087	33.898	34.203	0					8	5	2	0	0	0	0.78798	1	11136	11136		7.2892	3.3448	1	1872200			52292	3724	38004	38308	51062	51062					0.1250511349687713
TAKEAKIRK	9	Unmodified	_TAKEAKIRK_					0	0	0		ENSG00000121570|ENST00000335658|DPPA4	ENSG00000121570|ENST00000335658|DPPA4	ENSG00000121570|ENST00000335658|DPPA4	MULTI-MATCH	A375_MHC_IP_R2	2		2	522.82984	1043.64513	-0.72454	-0.00037881	-0.09359	-4.8932E-05	-0.81813	-0.00042774	522.829692995481	33.114	0.25467	33.866	33.737	33.992	0.75225	-0.11046	-6.2816E-05	NaN	7.2892	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1359200			52293	3724	38004	38308							0.1250511349687713
TAKEGFACP	9	Unmodified	_TAKEGFACP_					0	0	0		nc|ENSG00000180592|Q1XH10-2|SKIDA1;ENSG00000180592|ENST00000449193|SKIDA1	nc|ENSG00000180592|Q1XH10-2|SKIDA1	nc|ENSG00000180592|Q1XH10-2|SKIDA1	MULTI-SECPEP	A375_MHC_IP_R2	2	923.8313598632812	1	923.429129	922.421853	-0.10957	-0.00010118	0.86789	0.00080143	0.75832	0.00070026	923.4303816399723	114.47	1.4228	115.18	114.58	116	0.70985					38	27	2	0	0	0	0.71541	1	42982	42982		11.64	3.047	1	12458000			52294	8305	38005	38309	51063	51063					-0.04246123279699532
TAKEGFACP	9	Unmodified	_TAKEGFACP_					0	0	0		nc|ENSG00000180592|Q1XH10-2|SKIDA1;ENSG00000180592|ENST00000449193|SKIDA1	nc|ENSG00000180592|Q1XH10-2|SKIDA1	nc|ENSG00000180592|Q1XH10-2|SKIDA1	MULTI-SECPEP	A375_MHC_IP_R2	2	923.285888671875	1	923.429129	922.421853	-0.32795	-0.00030284	0.41702	0.00038509	0.089071	8.2251E-05	923.4303268700617	107.68	1.8329	108.43	107.64	109.48	0.75436					54	35	2	0	0	0	0.67483	1	40499	40499		6.2058	1.4498	1	6026800			52295	8305	38005	38309	51064	51064					-0.04246123279699532
TAKEGFACP	9	Unmodified	_TAKEGFACP_					0	0	0		nc|ENSG00000180592|Q1XH10-2|SKIDA1;ENSG00000180592|ENST00000449193|SKIDA1	nc|ENSG00000180592|Q1XH10-2|SKIDA1	nc|ENSG00000180592|Q1XH10-2|SKIDA1	MULTI-SECPEP	A375_MHC_IP_R2	2	923.103515625	1	923.429129	922.421853	-0.14767	-0.00013636	0.87257	0.00080576	0.7249	0.0006694	923.430697341274	110.55	1.6861	111.28	110.42	112.11	0.73692					47	32	2	0	0	0	0.67483	1	41487	41487		10.074	0	1	5943300			52296	8305	38005	38309	51065	51065					-0.04246123279699532
TAKESQEQ	8	Unmodified	_TAKESQEQ_					0	0	0		nc|ENSG00000214900|Q8WXQ3|LINC01599	nc|ENSG00000214900|Q8WXQ3|LINC01599	nc|ENSG00000214900|Q8WXQ3|LINC01599	MULTI-SECPEP	A375_MHC_IP_R2	2	920.2540893554688	1	920.431966	919.42469	-0.14615	-0.00013452	-1.4034	-0.0012918	-1.5496	-0.0014263	920.4313760560561	111.21	0.91957	111.95	111.4	112.32	0.73691					26	17	2	0	0	0	0.972	1	41756	41756		8.5933	0.68312	1	7811900			52297	14899	38006	38310	51066	51066					-0.03824576621173037
TAKESQEQ	8	Unmodified	_TAKESQEQ_					0	0	0		nc|ENSG00000214900|Q8WXQ3|LINC01599	nc|ENSG00000214900|Q8WXQ3|LINC01599	nc|ENSG00000214900|Q8WXQ3|LINC01599	MULTI-MATCH	A375_MHC_IP_R1	1		1	920.431966	919.42469	0.14157	0.0001303	-1.6939	-0.0015591	-1.5523	-0.0014288	920.4313260918683	111.9	1.4293	111.9	111.16	112.59	0	-0.024316	-9.8857E-05	NaN	8.5933	43	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8718500			52298	14899	38006	38310							-0.03824576621173037
TAKETTIR	8	Unmodified	_TAKETTIR_					0	0	0		nc|ENSG999|O00370|L1_ORF2;L1PA5_dup4054|chr5:147183212-147184419:-|1.0898619934076978|0.3037908791454333|1.84|459.0|11|2|sense;chr3:98867438-98881540|204|17.5|0.23|6.26|-|1|TE_info:L1PA5,L1PA5_dup2059,L1,LINE,acceptor,-,98865721,98867438|None,DCBLD2|4;L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|62|2|sense	nc|ENSG999|O00370|L1_ORF2	nc|ENSG999|O00370|L1_ORF2	MULTI-SECPEP	A375_MHC_IP_R2	2	919.7828979492188	1	919.520721	918.513445	-0.1739	-0.0001599	0.68615	0.00063093	0.51226	0.00047103	919.5226834276118	116.51	1.9323	117.17	116.36	118.29	0.65961					67	37	2	0	0	0	0.972	1	44533	44533		4.756	0	1	131030000			52299	14975	38007	38311	51067	51067					0.05092883409145088
TAKETTIR	8	Unmodified	_TAKETTIR_					0	0	0		nc|ENSG999|O00370|L1_ORF2;L1PA5_dup4054|chr5:147183212-147184419:-|1.0898619934076978|0.3037908791454333|1.84|459.0|11|2|sense;chr3:98867438-98881540|204|17.5|0.23|6.26|-|1|TE_info:L1PA5,L1PA5_dup2059,L1,LINE,acceptor,-,98865721,98867438|None,DCBLD2|4;L1PA6_dup546|chr2:49227587-49231532:-|2.926690975312449|0.2927699401366612|3.32|472.0|62|2|sense	nc|ENSG999|O00370|L1_ORF2	nc|ENSG999|O00370|L1_ORF2	MULTI-MATCH	A375_MHC_IP_R1	1		1	919.520721	918.513445	0.12808	0.00011777	0.6884	0.000633	0.81648	0.00075077	919.5224114758876	117.28	1.6743	117.28	116.55	118.22	0	0.054546	8.1709E-07	NaN	4.756	58	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200420000			52300	14975	38007	38311							0.05092883409145088
TAKFYESGISM	11	Unmodified	_TAKFYESGISM_					0	0	0		HYKK|p.S366F|1|0.44|ENSG00000188266|chr15:78533645-78533645|C/T|missense_variant	HYKK|p.S366F|1|0.44|ENSG00000188266|chr15:78533645-78533645|C/T|missense_variant	HYKK|p.S366F|1|0.44|ENSG00000188266|chr15:78533645-78533645|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	412.6225280761719	3	411.865518	1232.57472	-0.23731	-9.774E-05	2.2449	0.0009246	2.0076	0.00082686	411.8663976433131	26.861	0.40973	27.521	27.313	27.722	0.65992					10	7	2	0	0	0	0.99227	1	9104	9104		2.6312	0	1	1026700			52301	14145	38008	38312	51068	51068					-0.03225972673726574
TAKHFQKKL	9	Unmodified	_TAKHFQKKL_					0	0	0			REV__ENSG00000107295|ENST00000380607|SH3GL2	REV__ENSG00000107295|ENST00000380607|SH3GL2	MULTI-SECPEP	A375_MHC_IP_R2	2	366.9396057128906	3	367.557348	1099.65021	-0.073443	-2.6994E-05	0.20918	7.6885E-05	0.13573	4.989E-05	367.5573981776301	35.284	0.25377	36.048	35.878	36.132	0.76338					6	4	2	0	0	0	0.69504	1	12721	12721		2.4985	0	1	812730	+		52302	17480	38009	38313	51069	51069					0.10437417359503343
TAKLLDRSQ	9	Unmodified	_TAKLLDRSQ_					0	0	0			REV__ENSG00000188352|ENST00000338382|FOCAD	REV__ENSG00000188352|ENST00000338382|FOCAD	MULTI-SECPEP	A375_MHC_IP_R2	2	1032.08203125	1	1031.58438	1030.57711	0.073664	7.599E-05	-2.6013	-0.0026834	-2.5276	-0.0026074	1031.582745500703	108.59	0.20317	109.34	109.21	109.42	0.74684					5	3	2	0	0	0	0.75164	1	41008	41008		5.7319	0	1	1448800	+		52303	22088	38010	38314	51070	51070					0.06304243846238933
TAKLLNEIF	9	Unmodified	_TAKLLNEIF_					0	0	0		tr|U7SU44|U7SU44_FUSNUBifunctionalpurinebiosynthesisproteinPurHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purHPE=3SV=1	tr|U7SU44|U7SU44_FUSNUBifunctionalpurinebiosynthesisproteinPurHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purHPE=3SV=1	tr|U7SU44|U7SU44_FUSNUBifunctionalpurinebiosynthesisproteinPurHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purHPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	524.6946411132812	2	524.8055	1047.59645	-0.37013	-0.00019425	0.69844	0.00036654	0.3283	0.0001723	524.8056617290277	43.296	0.25452	44.069	43.977	44.231	0.7724					6	4	2	0	0	0	0.74412	1	16097	16097		6.2058	2.9245	1	1396200			52304	29737	38011	38315	51071	51071					0.07455200137110296
TAKLREFRN	9	Unmodified	_TAKLREFRN_					0	0	0			REV__CON__Q3SX14	REV__CON__Q3SX14	MULTI-SECPEP	A375_MHC_IP_R2	2	1135.152099609375	1	1134.63782	1133.63054	0.32203	0.00036539	-0.1633	-0.00018529	0.15873	0.0001801	1134.639678748218	114.96	0.25608	115.65	115.52	115.78	0.69					6	4	2	0	0	0	0.74412	1	43309	43309		6.2058	2.2614	1	1692900	+	+	52305	15885	38012	38316	51072	51072					0.06907041348745224
TAKLSVCLP	9	Unmodified	_TAKLSVCLP_					0	0	0		ENST00000435989.6_1_19:58386099-58386180:-|nuORF	ENST00000435989.6_1_19:58386099-58386180:-|nuORF	ENST00000435989.6_1_19:58386099-58386180:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	930.867431640625	1	931.528115	930.520839	-0.15774	-0.00014694	-0.57691	-0.00053741	-0.73465	-0.00068435	931.528288464264	109.61	1.3248	110.36	109.57	110.9	0.74684					28	25	2	0	0	0	0.74412	1	41162	41162		6.2058	1.8765	1	3081200			52306	11922	38013	38317	51073	51073					0.05279899685194778
TAKLTINY	8	Unmodified	_TAKLTINY_					0	0	0			REV__nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7	REV__nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7	MULTI-SECPEP	A375_MHC_IP_R2	2	922.8896484375	1	923.519659	922.512382	-0.2153	-0.00019883	1.5496	0.0014311	1.3343	0.0012322	923.5217712507284	109.41	1.2715	110.16	109.37	110.64	0.74684					40	24	2	0	0	0	0.92636	1	41217	41217		23.148	0	1	8839300	+		52307	22854	38014	38318	51074	51074					0.04802669040236651
TAKLTINY	8	Unmodified	_TAKLTINY_					0	0	0			REV__nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7	REV__nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7	MULTI-SECPEP	A375_MHC_IP_R2	2	923.103515625	1	923.519659	922.512382	-0.14673	-0.00013551	1.0894	0.0010061	0.94267	0.00087058	923.5212810861944	110.18	1.5838	110.92	110.63	112.21	0.73692					49	30	2	0	0	0	0.92636	1	41487	41487		16.942	0	1	7593700	+		52308	22854	38014	38318	51075	51075					0.04802669040236651
TAKLTINY	8	Unmodified	_TAKLTINY_					0	0	0			REV__nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7	REV__nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7	MULTI-MATCH	A375_MHC_IP_R1	1		1	923.519659	922.512382	0.075607	6.9825E-05	1.4835	0.0013701	1.5591	0.0014399	923.5215260427424	110.94	1.7883	110.94	110.24	112.03	0	0.011434	9.9804E-05	NaN	16.942	44	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12746000	+		52309	22854	38014	38318							0.04802669040236651
TAKPNWIV	8	Unmodified	_TAKPNWIV_					0	0	0			REV__ENSG00000151640|ENST00000338492|DPYSL4	REV__ENSG00000151640|ENST00000338492|DPYSL4	MULTI-SECPEP	A375_MHC_IP_R1	1	929.0133056640625	1	928.525079	927.517802	0.18316	0.00017007	4.3356	0.0040257	4.5187	0.0041958	928.5289195264139	108.97	0.96606	108.97	108.76	109.73	0					22	18	2	0	0	0	0.96266	1	40147	40147		11.64	3.047	1	3476900	+		52310	19763	38015	38319	51076	51076					0.05114392622704145
TAKTEGLSTF	10	Unmodified	_TAKTEGLSTF_					0	0	0		ENSG00000184305|ENST00000509176|CCSER1	ENSG00000184305|ENST00000509176|CCSER1	ENSG00000184305|ENST00000509176|CCSER1	MULTI-SECPEP	A375_MHC_IP_R1	1	351.93414306640625	3	352.185356	1053.53424	-0.32482	-0.0001144	-0.72899	-0.00025674	-1.0538	-0.00037113	352.1846606800463	39.819	0.65898	39.819	39.441	40.1	0					17	12	2	0	0	0	0.77204	1	13507	13507		18.721	7.8223	1	1901000			52311	8569	38016	38320	51077	51077					0.009614289981300317
TAKTEGLSTF	10	Unmodified	_TAKTEGLSTF_					0	0	0		ENSG00000184305|ENST00000509176|CCSER1	ENSG00000184305|ENST00000509176|CCSER1	ENSG00000184305|ENST00000509176|CCSER1	MULTI-MATCH	A375_MHC_IP_R2	2		3	352.185356	1053.53424	-0.47913	-0.00016874	1.6905	0.00059535	1.2113	0.00042661	352.18594872222764	38.896	0.46116	39.67	39.453	39.914	0.77451	-0.074605	6.1866E-05	NaN	18.721	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1478300			52312	8569	38016	38320							0.009614289981300317
TALAPAEL	8	Unmodified	_TALAPAEL_					0	0	0			REV__nc|ENSG00000124493|Q14833-3|GRM4	REV__nc|ENSG00000124493|Q14833-3|GRM4	MULTI-SECPEP	A375_MHC_IP_R2	2	393.63336181640625	2	393.223811	784.433069	-0.1135	-4.4631E-05	-0.56522	-0.00022226	-0.67872	-0.00026689	393.22393144367203	42.56	0.55856	43.332	43.065	43.623	0.7724					15	10	3	0	0	0	0.97144	1	15806	15806		5.2307	0	1	861350	+		52313	18308	38017	38321	51078	51078					0.03223022086092442
TALFSLLAAP	10	Unmodified	_TALFSLLAAP_					0	0	0		PRKAR1A|p.V381Efs*59|1|0.84|ENSG00000108946|chr17:68530437-68530440|ACTG/-|frameshift_variant	PRKAR1A|p.V381Efs*59|1|0.84|ENSG00000108946|chr17:68530437-68530440|ACTG/-|frameshift_variant	PRKAR1A|p.V381Efs*59|1|0.84|ENSG00000108946|chr17:68530437-68530440|ACTG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	501.6922302246094	2	502.294768	1002.57498	-0.71486	-0.00035907	-0.23026	-0.00011566	-0.94512	-0.00047473	502.29490314606005	80.872	0.9664	81.617	81.365	82.332	0.74474					26	18	2	0	0	0	0.72086	1	30843	30843		18.146	3.3081	1	3032600			52314	15227	38018	38322	51079	51079					0.07379815108413368
TALKRHLRSHT	11	Unmodified	_TALKRHLRSHT_					0	0	0		nc|ENSG00000109906|Q05516-2|ZBTB16;ENSG00000109906|ENST00000335953|ZBTB16;ENST00000535379.1_1_11:114107968-114121274:+|nuORF	nc|ENSG00000109906|Q05516-2|ZBTB16	nc|ENSG00000109906|Q05516-2|ZBTB16	MULTI-MSMS	A375_MHC_IP_R2	2	660.5013427734375	2	660.386377	1318.7582	-0.75333	-0.00049749	0.53267	0.00035177	-0.22067	-0.00014572	660.3865145147824	85.171	0.40771	85.907	85.677	86.085	0.73601					12	7	2	0	0	0	0.73189	1	32344	32344		7.1017	0.90987	1	2081100			52315	2900	38019	38323	51080	51080					0.1115718194278088
TALKSPRLA	9	Unmodified	_TALKSPRLA_					0	0	0		SYNGR4|p.P223L|1|0.36|ENSG00000105467|chr19:48376281-48376281|C/T|missense_variant	SYNGR4|p.P223L|1|0.36|ENSG00000105467|chr19:48376281-48376281|C/T|missense_variant	SYNGR4|p.P223L|1|0.36|ENSG00000105467|chr19:48376281-48376281|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	479.1973876953125	2	478.798009	955.581465	-0.58834	-0.0002817	-0.1615	-7.7327E-05	-0.74985	-0.00035902	478.7978981662752	67.108	0.55803	67.844	67.546	68.104	0.73631					29	10	4	0	0	0	0.4261	1	25398	25398		30.637	0	1	8471300			52316	29281	38020	38324	51081	51081					0.10189753059796658
TALKYSAI	8	Unmodified	_TALKYSAI_					0	0	0		ENSG00000144535|ENST00000325385|DIS3L2;ENST00000433430.5_1_2:233201010-233201337:+|nuORF	ENSG00000144535|ENST00000325385|DIS3L2	ENSG00000144535|ENST00000325385|DIS3L2	MSMS	A375_MHC_IP_R2	2	433.6608581542969	2	433.752736	865.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.049	1	96.799	96.299	97.299	0.75045								0	0	0	0.16876	1	36475	36475		20.871	1.4322	1				52317	5491	38021	38325	51082	51082					0.05279284011510299
TALLIVTRQF	10	Unmodified	_TALLIVTRQF_					0	0	0			REV__nc|ENSG00000164100|O95803-2|NDST3	REV__nc|ENSG00000164100|O95803-2|NDST3	MULTI-MSMS	A375_MHC_IP_R2	2	388.25823974609375	3	387.904524	1160.69174	-0.45283	-0.00017565	0.46382	0.00017992	0.01099	4.2631E-06	387.90463535949584	23.374	0.20086	24.005	23.878	24.079	0.63014					6	3	2	0	0	0	0.71866	1	7468	7468		3.8763	2.1341	1	3298100	+		52318	20450	38022	38326	51083	51083					0.11782553328202994
TALPLLKQF	9	Unmodified	_TALPLLKQF_					0	0	0		ENSG00000120158|ENST00000381750|RCL1	ENSG00000120158|ENST00000381750|RCL1	ENSG00000120158|ENST00000381750|RCL1	MULTI-MSMS	A375_MHC_IP_R1	1	516.2180786132812	2	515.81841	1029.62227	-0.43703	-0.00022543	0.12121	6.2523E-05	-0.31582	-0.00016291	515.8185036674442	97.011	1.521	97.011	96.529	98.05	0					110	29	5	0	0	0	0.0094639	1	35773	35773		106.94	66.983	1	52853000			52319	3652	38023	38327	51084	51084					0.10864094379417111
TALPLLKQF	9	Unmodified	_TALPLLKQF_					0	0	0		ENSG00000120158|ENST00000381750|RCL1	ENSG00000120158|ENST00000381750|RCL1	ENSG00000120158|ENST00000381750|RCL1	MULTI-MSMS	A375_MHC_IP_R2	2	516.2177124023438	2	515.81841	1029.62227	-0.74837	-0.00038602	0.12116	6.2496E-05	-0.62721	-0.00032353	515.8185528672425	96.112	2.2866	96.863	95.785	98.072	0.75045					115	44	4	0	0	0	0.029064	1	36618	36618		75.761	45.124	1	36177000			52320	3652	38023	38327	51085	51085					0.10864094379417111
TALQNTPSL	9	Unmodified	_TALQNTPSL_					0	0	0		ENST00000409236.6_1_2:100167659-100167914:-|nuORF	ENST00000409236.6_1_2:100167659-100167914:-|nuORF	ENST00000409236.6_1_2:100167659-100167914:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	473.155517578125	2	472.756007	943.497461	-0.57136	-0.00027011	0.63872	0.00030196	0.067361	3.1845E-05	472.75602788569694	47.029	0.71859	47.029	46.596	47.315	0					21	13	2	0	0	0	0.030038	1	16537	16537		74.929	24.074	1	5443400			52321	11627	38024	38328	51086	51086					0.023451771722420744
TALQNTPSL	9	Unmodified	_TALQNTPSL_					0	0	0		ENST00000409236.6_1_2:100167659-100167914:-|nuORF	ENST00000409236.6_1_2:100167659-100167914:-|nuORF	ENST00000409236.6_1_2:100167659-100167914:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	473.1557312011719	2	472.756007	943.497461	-0.46577	-0.00022019	0.30536	0.00014436	-0.1604	-7.5831E-05	472.7557530736468	46.336	0.60965	47.101	46.755	47.364	0.76519					19	11	2	0	0	0	0.030038	1	17335	17335		74.929	6.8483	1	2827600			52322	11627	38024	38328	51087	51087					0.023451771722420744
TALRGAPV	8	Unmodified	_TALRGAPV_					0	0	0			REV__VPS37B|p.P222L|1|0.42|ENSG00000139722|chr12:122867309-122867309|G/A|missense_variant	REV__VPS37B|p.P222L|1|0.42|ENSG00000139722|chr12:122867309-122867309|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	392.308349609375	2	392.73742	783.460287	0.035937	1.4114E-05	0.32621	0.00012811	0.36215	0.00014223	392.7374552528608	34.328	0.45457	34.328	34.103	34.557	0					12	8	2	0	0	0	0.96266	1	11215	11215		7.2892	2.5332	1	1729900	+		52323	19176	38025	38329	51088	51088					0.0598955041713225
TALRGAPV	8	Unmodified	_TALRGAPV_					0	0	0			REV__VPS37B|p.P222L|1|0.42|ENSG00000139722|chr12:122867309-122867309|G/A|missense_variant	REV__VPS37B|p.P222L|1|0.42|ENSG00000139722|chr12:122867309-122867309|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	392.73742	783.460287	-0.60715	-0.00023845	0.3069	0.00012053	-0.30025	-0.00011792	392.7374922895851	33.456	0.45758	34.208	33.992	34.45	0.75225	-0.059767	-8.221E-06	NaN	7.2892	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1424900	+		52324	19176	38025	38329							0.0598955041713225
TALRNRNL	8	Unmodified	_TALRNRNL_					0	0	0		ENSG00000183654|ENST00000332432|MARCHF11;nc|ENSG00000183654|A6NNE9-2|MARCHF11	ENSG00000183654|ENST00000332432|MARCHF11	ENSG00000183654|ENST00000332432|MARCHF11	MSMS	A375_MHC_IP_R2	2	479.1973876953125	2	479.283057	956.551562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.04	1	67.776	67.276	68.276	0.73631								0	0	0	0.16756	1	25398	25398		42.095	5.9675	1				52325	8514	38026	38330	51089	51089					0.0715481411446035
TALRYQKKF	9	Unmodified	_TALRYQKKF_					0	0	0		nc|ENSG00000121440|Q9UPQ7-2|PDZRN3;nc|ENSG00000121440|Q9UPQ7-3|PDZRN3;ENSG00000121440|ENST00000263666|PDZRN3	nc|ENSG00000121440|Q9UPQ7-2|PDZRN3	nc|ENSG00000121440|Q9UPQ7-2|PDZRN3	MULTI-MSMS	A375_MHC_IP_R1	1	385.96063232421875	3	385.560869	1153.66078	0.39134	0.00015089	-0.62388	-0.00024054	-0.23253	-8.9655E-05	385.56058187957103	20.612	0.56116	20.612	20.232	20.793	0					16	10	2	0	0	0	0.32889	1	5327	5327		28.495	11.052	1	2737900			52326	14569	38027	38331	51090	51090					0.09009400013928826
TALVFTFL	8	Unmodified	_TALVFTFL_					0	0	0			REV__ENSG00000244694|ENST00000339488|PTCHD4	REV__ENSG00000244694|ENST00000339488|PTCHD4	MSMS	A375_MHC_IP_R1	1	456.1950988769531	2	456.265479	910.516405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.696	1	35.696	35.196	36.196	0								0	0	0	0.16876	1	11893	11893		13.508	0.97634	1		+		52327	22827	38028	38332	51091	51091					0.05756758533937045
TALWNGFC	8	Unmodified	_TALWNGFC_					0	0	0			REV__ENST00000436347.5_1_2:190313199-190340140:+|nuORF	REV__ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MSMS	A375_MHC_IP_R2	2	456.1949768066406	2	456.207638	910.400723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.729	1	35.492	34.992	35.992	0.76338								0	0	0	0.16876	1	12553	12553		9.3474	1.4373	1		+		52328	17880	38029	38333	51092	51092					-0.058060885885424796
TALYQFLFY	9	Unmodified	_TALYQFLFY_					0	0	0		nc|ENSG00000108187|P30039-2|PBLD	nc|ENSG00000108187|P30039-2|PBLD	nc|ENSG00000108187|P30039-2|PBLD	MULTI-SECPEP	A375_MHC_IP_R1	1	388.92486572265625	3	389.202459	1164.58555	-0.11316	-4.4041E-05	0.095554	3.719E-05	-0.017604	-6.8517E-06	389.2033653872384	23.624	0.40683	23.624	23.381	23.787	0					11	7	2	0	0	0	0.78351	1	6464	6464		5.2969	0	1	1936500			52329	14533	38030	38334	51093	51093					0.009837977628421868
TAMCVCCPCC	10	Unmodified	_TAMCVCCPCC_					0	0	0		TRIM42|p.E2K|1|0.15|ENSG00000155890|chr3:140678233-140678233|G/A|missense_variant;nc|ENSG00000155890|Q8IWZ5-2|TRIM42;ENSG00000155890|ENST00000286349|TRIM42	TRIM42|p.E2K|1|0.15|ENSG00000155890|chr3:140678233-140678233|G/A|missense_variant	TRIM42|p.E2K|1|0.15|ENSG00000155890|chr3:140678233-140678233|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	517.213134765625	2	517.158747	1032.30294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.336	1	78.336	77.836	78.836	0								0	0	0	0.15591	1	28588	28588		1.6526	0.85899	1				52330	6162	38031	38335	51094	51094					-0.21191764158743354
TAMCVCCPCC	10	Unmodified	_TAMCVCCPCC_					0	0	0		TRIM42|p.E2K|1|0.15|ENSG00000155890|chr3:140678233-140678233|G/A|missense_variant;nc|ENSG00000155890|Q8IWZ5-2|TRIM42;ENSG00000155890|ENST00000286349|TRIM42	TRIM42|p.E2K|1|0.15|ENSG00000155890|chr3:140678233-140678233|G/A|missense_variant	TRIM42|p.E2K|1|0.15|ENSG00000155890|chr3:140678233-140678233|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	517.195068359375	2	517.158747	1032.30294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.872	1	86.872	86.372	87.372	0								0	0	0	0.15591	1	31864	31864		1.6526	0	1				52331	6162	38031	38335	51095	51095					-0.21191764158743354
TAMCVCCPCC	10	Unmodified	_TAMCVCCPCC_					0	0	0		TRIM42|p.E2K|1|0.15|ENSG00000155890|chr3:140678233-140678233|G/A|missense_variant;nc|ENSG00000155890|Q8IWZ5-2|TRIM42;ENSG00000155890|ENST00000286349|TRIM42	TRIM42|p.E2K|1|0.15|ENSG00000155890|chr3:140678233-140678233|G/A|missense_variant	TRIM42|p.E2K|1|0.15|ENSG00000155890|chr3:140678233-140678233|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	517.1529541015625	2	517.158747	1032.30294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.267	1	42.041	41.541	42.541	0.77451								0	0	0	0.15591	1	15306	15306		1.6526	0	1				52332	6162	38031	38335	51096	51096					-0.21191764158743354
TAMCVCCPCC	10	Unmodified	_TAMCVCCPCC_					0	0	0		TRIM42|p.E2K|1|0.15|ENSG00000155890|chr3:140678233-140678233|G/A|missense_variant;nc|ENSG00000155890|Q8IWZ5-2|TRIM42;ENSG00000155890|ENST00000286349|TRIM42	TRIM42|p.E2K|1|0.15|ENSG00000155890|chr3:140678233-140678233|G/A|missense_variant	TRIM42|p.E2K|1|0.15|ENSG00000155890|chr3:140678233-140678233|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	517.1768188476562	2	517.158747	1032.30294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.54	1	48.301	47.801	48.801	0.76128								0	0	0	0.15591	1	17829	17829		1.6526	0	1				52333	6162	38031	38335	51097	51097					-0.21191764158743354
TAMCVCCPCC	10	Unmodified	_TAMCVCCPCC_					0	0	0		TRIM42|p.E2K|1|0.15|ENSG00000155890|chr3:140678233-140678233|G/A|missense_variant;nc|ENSG00000155890|Q8IWZ5-2|TRIM42;ENSG00000155890|ENST00000286349|TRIM42	TRIM42|p.E2K|1|0.15|ENSG00000155890|chr3:140678233-140678233|G/A|missense_variant	TRIM42|p.E2K|1|0.15|ENSG00000155890|chr3:140678233-140678233|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	517.212890625	2	517.158747	1032.30294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.242	1	77.984	77.484	78.484	0.74293								0	0	0	0.15591	1	29332	29332		1.6526	0.85899	1				52334	6162	38031	38335	51098	51098					-0.21191764158743354
TAMCVCCPCC	10	Unmodified	_TAMCVCCPCC_					0	0	0		TRIM42|p.E2K|1|0.15|ENSG00000155890|chr3:140678233-140678233|G/A|missense_variant;nc|ENSG00000155890|Q8IWZ5-2|TRIM42;ENSG00000155890|ENST00000286349|TRIM42	TRIM42|p.E2K|1|0.15|ENSG00000155890|chr3:140678233-140678233|G/A|missense_variant	TRIM42|p.E2K|1|0.15|ENSG00000155890|chr3:140678233-140678233|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	517.0930786132812	2	517.158747	1032.30294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.703	1	86.439	85.939	86.939	0.73601								0	0	0	0.15591	1	32586	32586		1.6526	0	1				52335	6162	38031	38335	51099	51099					-0.21191764158743354
TAMETLINV	9	Unmodified	_TAMETLINV_					0	0	0		ENSG00000160678|ENST00000292169|S100A1	ENSG00000160678|ENST00000292169|S100A1	ENSG00000160678|ENST00000292169|S100A1	MULTI-MSMS	A375_MHC_IP_R1	1	496.6600646972656	2	496.260068	990.505582	-0.33967	-0.00016856	0.032824	1.6289E-05	-0.30685	-0.00015228	496.260282993601	102.69	0.55821	102.69	102.45	103.01	0					20	10	3	0	0	0	0.022213	1	37740	37740		81.613	24.142	1	2019400			52336	6429	38032	38336	51100	51100					0.009949880973749714
TAMETLINV	9	Unmodified	_TAMETLINV_					0	0	0		ENSG00000160678|ENST00000292169|S100A1	ENSG00000160678|ENST00000292169|S100A1	ENSG00000160678|ENST00000292169|S100A1	MULTI-MSMS	A375_MHC_IP_R2	2	496.6596374511719	2	496.260068	990.505582	-0.41764	-0.00020726	-0.25738	-0.00012773	-0.67502	-0.00033498	496.2598820500117	101.88	0.55836	102.64	102.36	102.92	0.76428					16	10	2	0	0	0	0.022213	1	38609	38609		81.613	33.267	1	1453100			52337	6429	38032	38336	51101	51101					0.009949880973749714
TAMETLINV	9	Oxidation (M)	_TAM(Oxidation (M))ETLINV_		TAM(1)ETLINV		TAM(48)ETLINV	0	0	1		ENSG00000160678|ENST00000292169|S100A1	ENSG00000160678|ENST00000292169|S100A1	ENSG00000160678|ENST00000292169|S100A1	MULTI-MSMS	A375_MHC_IP_R2	2	504.6570739746094	2	504.257525	1006.5005	-0.68439	-0.00034511	-0.96117	-0.00048468	-1.6456	-0.00082979	504.2572973093249	77.099	1.3699	77.842	76.945	78.315	0.74293					40	26	3	0	0	0	0.11296	1	29250	29250		48.346	14.243	1	2090600			52338	6429	38032	38337	51102	51102		344			-0.0024931576523385957
TAMETLINV	9	Oxidation (M)	_TAM(Oxidation (M))ETLINV_					0	0	1		ENSG00000160678|ENST00000292169|S100A1	ENSG00000160678|ENST00000292169|S100A1	ENSG00000160678|ENST00000292169|S100A1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	504.257525	1006.5005	-0.29088	-0.00014668	1.0846	0.00054691	0.79371	0.00040023	504.25733434908057	78.016	0.91684	78.016	77.639	78.556	0	0.08679	0.0007826	NaN	48.346	40	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2094400			52339	6429	38032	38337				344			-0.0024931576523385957
TAMLVKINGR	10	Unmodified	_TAMLVKINGR_					0	0	0			REV__ENSG00000161057|ENST00000292644|PSMC2	REV__ENSG00000161057|ENST00000292644|PSMC2	MULTI-MSMS	A375_MHC_IP_R1	1	368.5686340332031	3	368.218226	1101.63285	0.070184	2.5843E-05	0.46618	0.00017166	0.53637	0.0001975	368.2184041015918	38.449	0.30896	38.449	38.268	38.577	0					10	5	2	0	0	0	0.70312	1	13035	13035		10.899	3.7972	1	3002600	+		52340	20200	38033	38338	51103	51103					0.08609753762198125
TAMYFCAF	8	Unmodified	_TAMYFCAF_					0	0	0		nc|ENSG00000211816|A0A0B4J264|TRAV38-1	nc|ENSG00000211816|A0A0B4J264|TRAV38-1	nc|ENSG00000211816|A0A0B4J264|TRAV38-1	MSMS	A375_MHC_IP_R1	1	477.2002868652344	2	477.198425	952.382296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.18	1	30.18	29.68	30.68	0								0	0	0	0.16876	1	9554	9554		10.183	0	1				52341	14886	38034	38339	51104	51104					-0.0957996655477018
TANKYQVF	8	Unmodified	_TANKYQVF_					0	0	0		ENST00000495212.1_1_1:156715087-156721275:-|nuORF;ENST00000469145.5_1_1:156714305-156721275:-|nuORF;ENST00000482651.5_1_1:156713243-156717241:-|nuORF;ENST00000465180.5_1_1:156713243-156725382:-|nuORF;nc|ENSG00000143321|P51858-2|HDGF;ENSG00000143321|ENST00000357325|HDGF;nc|ENSG00000143321|P51858-3|HDGF	ENST00000495212.1_1_1:156715087-156721275:-|nuORF	ENST00000495212.1_1_1:156715087-156721275:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	486.1871337890625	2	485.753267	969.491981	-0.26405	-0.00012827	0.057399	2.7882E-05	-0.20666	-0.00010038	485.75324081282423	60.694	1.0175	60.694	59.905	60.922	0					21	19	2	0	0	0	0.73946	1	21803	21803		23.148	3.7094	1	1362400			52342	5369	38035	38340	51105	51105					0.006014983804220719
TANKYQVFF	9	Unmodified	_TANKYQVFF_					0	0	0		ENST00000495212.1_1_1:156715087-156721275:-|nuORF;ENST00000469145.5_1_1:156714305-156721275:-|nuORF;ENST00000482651.5_1_1:156713243-156717241:-|nuORF;ENST00000465180.5_1_1:156713243-156725382:-|nuORF;nc|ENSG00000143321|P51858-2|HDGF;ENSG00000143321|ENST00000357325|HDGF;nc|ENSG00000143321|P51858-3|HDGF	ENST00000495212.1_1_1:156715087-156721275:-|nuORF	ENST00000495212.1_1_1:156715087-156721275:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	559.2056274414062	2	559.287474	1116.5604	-0.50768	-0.00028394	-0.81046	-0.00045328	-1.3181	-0.00073722	559.286493353517	73.768	0.65872	73.768	73.386	74.045	0					15	12	2	0	0	0	0.59927	1	26848	26848		24.991	2.2547	1	909260			52343	5369	38036	38341	51106	51106					0.0067774296028346726
TANKYQVFF	9	Unmodified	_TANKYQVFF_					0	0	0		ENST00000495212.1_1_1:156715087-156721275:-|nuORF;ENST00000469145.5_1_1:156714305-156721275:-|nuORF;ENST00000482651.5_1_1:156713243-156717241:-|nuORF;ENST00000465180.5_1_1:156713243-156725382:-|nuORF;nc|ENSG00000143321|P51858-2|HDGF;ENSG00000143321|ENST00000357325|HDGF;nc|ENSG00000143321|P51858-3|HDGF	ENST00000495212.1_1_1:156715087-156721275:-|nuORF	ENST00000495212.1_1_1:156715087-156721275:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	559.2060546875	2	559.287474	1116.5604	-0.72415	-0.00040501	-0.12173	-6.8079E-05	-0.84588	-0.00047309	559.2874397864858	72.953	0.6109	73.689	73.379	73.99	0.73541					13	11	2	0	0	0	0.55534	1	27685	27685		27.629	8.3718	1	1130600			52344	5369	38036	38341	51107	51107					0.0067774296028346726
TAPALTYPYEY	11	Unmodified	_TAPALTYPYEY_					0	0	0			REV__nc|ENSG00000112531|Q96PU8-9|QKI	REV__nc|ENSG00000112531|Q96PU8-9|QKI	MULTI-SECPEP	A375_MHC_IP_R1	1	644.6723022460938	2	644.808436	1287.60232	-0.26314	-0.00016967	3.5346	0.0022792	3.2715	0.0021095	644.8116079446601	44.292	0.76486	44.292	43.706	44.471	0					19	14	2	0	0	0	0.95991	1	15242	15242		18.146	12.414	1	1890700	+		52345	27178	38037	38342	51108	51108					-0.029977461418638995
TAPIGYRK	8	Unmodified	_TAPIGYRK_					0	0	0		ENST00000290390.9_1_2:74644611-74644719:-|nuORF	ENST00000290390.9_1_2:74644611-74644719:-|nuORF	ENST00000290390.9_1_2:74644611-74644719:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	453.68194580078125	2	453.263802	904.513051	-0.34446	-0.00015613	0.042229	1.9141E-05	-0.30223	-0.00013699	453.2637725666129	65.741	0.40692	65.741	65.514	65.921	0					13	7	2	0	0	0	0.77488	1	23749	23749		13.508	0	1	1193500			52346	10470	38038	38343	51109	51109					0.05697508479943281
TAPIKSPT	8	Unmodified	_TAPIKSPT_					0	0	0		ENST00000491061.1_1_7:151805139-151814490:+|nuORF;ENSG00000178234|ENST00000430044|GALNT11	ENST00000491061.1_1_7:151805139-151814490:+|nuORF	ENST00000491061.1_1_7:151805139-151814490:+|nuORF	MSMS	A375_MHC_IP_R2	2	407.6361389160156	2	407.737086	813.459619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.345	1	21.964	21.464	22.464	0.61932								0	0	0	0.16876	1	6712	6712		7.2892	0	1				52347	8148	38039	38344	51110	51110					0.04542710977432307
TAPLSRRLNV	10	Unmodified	_TAPLSRRLNV_					0	0	0			REV__ENST00000483377.5_1_6:45296148-45296399:+|nuORF	REV__ENST00000483377.5_1_6:45296148-45296399:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	376.6278991699219	3	376.22789	1125.66184	0.41567	0.00015639	-0.29885	-0.00011244	0.11682	4.3952E-05	376.22777156404345	20.325	0.5062	20.325	20.03	20.536	0					17	9	2	0	0	0	0.6502	1	5201	5201		10.899	3.7972	1	2018100	+		52348	25290	38040	38345	51111	51111					0.10403614382857995
TAPMTVAQPD	10	Unmodified	_TAPMTVAQPD_					0	0	0			REV__nc|ENSG00000102316|Q9UNF1-2|MAGED2	REV__nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-SECPEP	A375_MHC_IP_R1	1	515.1612548828125	2	515.747324	1029.4801	-0.85886	-0.00044295	0.17339	8.9423E-05	-0.68547	-0.00035353	515.7475083555188	26.351	0.55827	26.351	26.118	26.677	0					18	10	3	0	0	0	0.64716	1	7805	7805		22.736	0	1	1752800	+		52349	17215	38041	38346	51112	51112					-0.033464864250845494
TAQASLHDALD	11	Unmodified	_TAQASLHDALD_					0	0	0			REV__ENSG00000144031|ENST00000360589|ANKRD53	REV__ENSG00000144031|ENST00000360589|ANKRD53	MULTI-SECPEP	A375_MHC_IP_R2	2	570.9671020507812	2	571.277835	1140.54112	-0.62907	-0.00035938	2.0768	0.0011865	1.4478	0.00082708	571.7798691480139	57.375	0.86696	58.124	57.762	58.629	0.74894					26	16	3	0	0	0	0.84606	1	21810	21810		27.629	13.723	1	1565600	+		52350	19406	38042	38347	51113	51113					-0.023532581212975856
TAQQLRQLI	9	Unmodified	_TAQQLRQLI_					0	0	0			REV__ENST00000527048.1_1_11:65812760-65812886:-|nuORF	REV__ENST00000527048.1_1_11:65812760-65812886:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	357.9488220214844	3	357.548741	1069.62439	-0.21491	-7.6842E-05	-0.066186	-2.3665E-05	-0.2811	-0.00010051	357.548748724467	23.452	0.30649	23.452	23.278	23.584	0					13	5	3	0	0	0	0.76642	1	6458	6458		12.873	6.6668	1	5491800	+		52351	21334	38043	38348	51114	51114					0.09236523117237994
TAQQQQRNL	9	Unmodified	_TAQQQQRNL_					0	0	0		nc|ENSG00000136143|Q9P2R7-2|SUCLA2	nc|ENSG00000136143|Q9P2R7-2|SUCLA2	nc|ENSG00000136143|Q9P2R7-2|SUCLA2	MULTI-SECPEP	A375_MHC_IP_R2	2	543.1610107421875	2	543.786161	1085.55777	-0.68099	-0.00037031	-2.9725	-0.0016164	-3.6535	-0.0019867	543.7848215788882	43.303	0.60778	44.075	43.674	44.282	0.7724					13	11	2	0	0	0	0.73363	1	16189	16189		10.824	0.75	1	1532900			52352	14619	38044	38349	51115	51115					0.018412875553167396
TAQRVTYKYYV	11	Unmodified	_TAQRVTYKYYV_					0	0	0		nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2;nc|ENSG00000126226|Q5JVF3-3|PCID2	nc|ENSG00000126226|Q5JVF3-2|PCID2	nc|ENSG00000126226|Q5JVF3-2|PCID2	MULTI-MSMS	A375_MHC_IP_R1	1	697.2993774414062	2	696.369527	1390.7245	-0.85819	-0.00059762	-0.19581	-0.00013635	-1.054	-0.00073397	696.3692636480808	132.36	1.2651	132.36	131.63	132.89	0					50	24	3	0	0	0	0.73189	1	51058	51058		7.1017	0	1	10862000			52353	4031	38045	38350	51116	51116					0.04476715660393893
TAQRVTYKYYV	11	Unmodified	_TAQRVTYKYYV_					0	0	0		nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2;nc|ENSG00000126226|Q5JVF3-3|PCID2	nc|ENSG00000126226|Q5JVF3-2|PCID2	nc|ENSG00000126226|Q5JVF3-2|PCID2	MULTI-SECPEP	A375_MHC_IP_R1	1	465.3354187011719	3	464.58211	1390.7245	-0.46184	-0.00021456	-0.63424	-0.00029466	-1.0961	-0.00050922	464.58166344656223	131.42	0.80771	131.42	131.07	131.88	0					22	15	2	0	0	0	0.99945	1	50622	50622		4.1166	2.9018	1	3126200			52354	4031	38045	38350	51117	51117					0.04476715660393893
TAQVWHVT	8	Unmodified	_TAQVWHVT_					0	0	0			REV__ENSG00000132510|ENST00000448097|KDM6B	REV__ENSG00000132510|ENST00000448097|KDM6B	MULTI-SECPEP	A375_MHC_IP_R2	2	471.3240966796875	2	471.245609	940.476666	-0.47814	-0.00022532	0.041798	1.9697E-05	-0.43634	-0.00020563	471.2455573215561	46.348	0.55931	47.113	46.805	47.364	0.76519					20	10	3	0	0	0	0.972	1	17453	17453		2.0598	0	1	5335300	+		52355	18659	38046	38351	51118	51118					0.00404631583239734
TARAERLAVRL	11	Unmodified	_TARAERLAVRL_					0	0	0			REV__ENSG00000107816|ENST00000454422|LZTS2	REV__ENSG00000107816|ENST00000454422|LZTS2	MULTI-MSMS	A375_MHC_IP_R1	1	628.7411499023438	2	628.383303	1254.75205	-0.66471	-0.00041769	-1.2111	-0.00076105	-1.8758	-0.0011787	628.3824409231725	129.07	1.1705	129.07	128.43	129.6	0					58	22	3	0	0	0	0.73715	1	49744	49744		2.086	2.086	1	27505000	+		52356	17499	38047	38352	51119	51119					0.13486663711250912
TARKSQLP	8	Unmodified	_TARKSQLP_					0	0	0		ZNF839|p.F398Sfs*36|1|0.24|ENSG00000022976|chr14:102335715-102335715|T/-|frameshift_variant;nc|ENSG00000022976|A8K0R7|ZNF839;nc|ENSG00000022976|A8K0R7-2|ZNF839;ENSG00000022976|ENST00000442396|ZNF839	ZNF839|p.F398Sfs*36|1|0.24|ENSG00000022976|chr14:102335715-102335715|T/-|frameshift_variant	ZNF839|p.F398Sfs*36|1|0.24|ENSG00000022976|chr14:102335715-102335715|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	451.1669616699219	2	450.766709	899.518865	-0.18137	-8.1754E-05	0.27386	0.00012345	0.092497	4.1694E-05	450.76684877757987	38.557	0.35822	38.557	38.371	38.73	0					14	6	3	0	0	0	0.94479	1	13104	13104		8.5933	0	1	5560600			52357	1070	38048	38353	51120	51120					0.06508606991610577
TARLPSFEI	9	Unmodified	_TARLPSFEI_					0	0	0			REV__ENST00000561014.1_1_15:49531438-49610381:+|nuORF	REV__ENST00000561014.1_1_15:49531438-49610381:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	517.68701171875	2	517.287474	1032.5604	-0.74995	-0.00038794	0.16154	8.3562E-05	-0.58841	-0.00030438	517.2875228740114	77.345	0.55833	78.088	77.807	78.365	0.74293					20	10	3	0	0	0	0.34064	1	29389	29389		27.629	2.2295	1	4169800	+		52358	20002	38049	38354	51121	51121					0.04541742960304873
TARPPGYEF	9	Unmodified	_TARPPGYEF_					0	0	0		IRF2BP1|p.L272V|1|0.18|ENSG00000170604|chr19:45884961-45884961|G/C|missense_variant;IRF2BP1|p.G434Pfs*145|1|0.11|ENSG00000170604|chr19:45884474-45884475|CC/-|frameshift_variant;ENSG00000170604|ENST00000302165|IRF2BP1	IRF2BP1|p.L272V|1|0.18|ENSG00000170604|chr19:45884961-45884961|G/C|missense_variant	IRF2BP1|p.L272V|1|0.18|ENSG00000170604|chr19:45884961-45884961|G/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	519.732666015625	2	519.256174	1036.49779	-0.47595	-0.00024714	-0.22358	-0.00011609	-0.69952	-0.00036323	519.2560795538319	44.071	0.97139	44.071	43.603	44.575	0					33	18	3	0	0	0	0.52905	1	15291	15291		18.373	9.6277	1	2814700			52359	7524	38050	38355	51122	51122					-0.01899403107904618
TARPPGYEF	9	Unmodified	_TARPPGYEF_					0	0	0		IRF2BP1|p.L272V|1|0.18|ENSG00000170604|chr19:45884961-45884961|G/C|missense_variant;IRF2BP1|p.G434Pfs*145|1|0.11|ENSG00000170604|chr19:45884474-45884475|CC/-|frameshift_variant;ENSG00000170604|ENST00000302165|IRF2BP1	IRF2BP1|p.L272V|1|0.18|ENSG00000170604|chr19:45884961-45884961|G/C|missense_variant	IRF2BP1|p.L272V|1|0.18|ENSG00000170604|chr19:45884961-45884961|G/C|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	519.256174	1036.49779	-0.56031	-0.00029095	-0.4544	-0.00023595	-1.0147	-0.0005269	519.2559498843732	43.19	0.90966	43.962	43.623	44.533	0.7724	-0.05463	-0.00016199	NaN	18.373	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4139500			52360	7524	38050	38355							-0.01899403107904618
TARTIYCPQVH	11	Unmodified	_TARTIYCPQVH_					0	0	0			REV__CON__A2VCT4	REV__CON__A2VCT4	MULTI-SECPEP	A375_MHC_IP_R2	2	429.8785400390625	3	430.220407	1287.63939	-0.48629	-0.00020921	0.43394	0.00018669	-0.052347	-2.2521E-05	430.22076090438065	18.903	0.44613	19.506	19.438	19.884	0.60308					13	9	2	0	0	0	1.0012	1	5687	5687		1.1098	0.33322	1	9767600	+	+	52361	15838	38051	38356	51123	51123					0.007076469229104987
TARVITNQY	9	Unmodified	_TARVITNQY_					0	0	0		ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	MULTI-SECPEP	A375_MHC_IP_R2	2	533.6871948242188	2	533.288005	1064.56146	-1.1412	-0.0006086	-1.1276	-0.00060135	-2.2689	-0.00121	533.2880104154073	59.072	0.50732	59.819	59.54	60.047	0.74714					27	9	4	0	0	0	0.65527	1	22357	22357		17.113	3.2068	1	5739900			52362	2739	38052	38357	51124	51124					0.031759573291765264
TARVTVTGW	9	Unmodified	_TARVTVTGW_					0	0	0		ENST00000456057.5_2_6:41755171-41755237:+|nuORF	ENST00000456057.5_2_6:41755171-41755237:+|nuORF	ENST00000456057.5_2_6:41755171-41755237:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	496.1713562011719	2	495.771991	989.529429	-0.427	-0.00021169	-0.48088	-0.00023841	-0.90788	-0.0004501	495.77173920220747	52.482	0.71046	52.482	52.034	52.744	0					33	13	4	0	0	0	0.053555	1	18686	18686		71.708	33.734	1	5716500			52363	12123	38053	38358	51125	51125					0.0342458964605612
TASEGELSWYN	11	Unmodified	_TASEGELSWYN_					0	0	0		nc|ENSG00000127329|P23467-4|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB;ENSG00000127329|ENST00000334414|PTPRB	nc|ENSG00000127329|P23467-4|PTPRB	nc|ENSG00000127329|P23467-4|PTPRB	MULTI-SECPEP	A375_MHC_IP_R2	2	628.1959228515625	2	628.775125	1255.5357	-1.1878	-0.00074686	-0.3734	-0.00023478	-1.5612	-0.00098164	629.2760468050406	38.45	0.55956	39.225	39.098	39.658	0.77451					14	10	2	0	0	0	0.9889	1	14125	14125		8.1555	4.8742	1	2302600			52364	4083	38054	38359	51126	51126					-0.0818498170372095
TASEGELSWYN	11	Unmodified	_TASEGELSWYN_					0	0	0		nc|ENSG00000127329|P23467-4|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB;ENSG00000127329|ENST00000334414|PTPRB	nc|ENSG00000127329|P23467-4|PTPRB	nc|ENSG00000127329|P23467-4|PTPRB	MULTI-MATCH	A375_MHC_IP_R1	1		2	628.775125	1255.5357	-0.42304	-0.000266	-0.44262	-0.00027831	-0.86566	-0.0005443	628.7748126847866	39.204	0.50782	39.204	38.983	39.491	0	-0.0106	-4.3855E-05	NaN	8.1555	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1789300			52365	4083	38054	38359							-0.0818498170372095
TASFLSQTV	9	Unmodified	_TASFLSQTV_					0	0	0		nc|ENSG00000166676|A6NH52-2|TVP23A;ENSG00000166676|ENST00000299866|TVP23A	nc|ENSG00000166676|A6NH52-2|TVP23A	nc|ENSG00000166676|A6NH52-2|TVP23A	MULTI-SECPEP	A375_MHC_IP_R2	2	477.1631774902344	2	477.250557	952.486562	-0.77436	-0.00036956	0.16333	7.7949E-05	-0.61103	-0.00029161	477.25054703520783	35.263	0.45473	36.026	35.778	36.233	0.76338					13	8	2	0	0	0	0.58271	1	12688	12688		20.454	6.5476	1	1535300			52366	7099	38055	38360	51127	51127					0.008417747979592605
TASHLVPLTI	10	Unmodified	_TASHLVPLTI_					0	0	0			REV__ENSG00000176920|ENST00000425340|FUT2	REV__ENSG00000176920|ENST00000425340|FUT2	MULTI-SECPEP	A375_MHC_IP_R1	1	526.619873046875	2	526.310949	1050.60735	-0.38641	-0.00020337	-0.44013	-0.00023164	-0.82653	-0.00043501	526.8120453804218	62.88	0.35794	62.88	62.66	63.018	0					10	6	2	0	0	0	0.91556	1	22651	22651		14.838	10.082	1	1042300	+		52367	21428	38056	38361	51128	51128					0.08406602511422534
TASHLVPLTI	10	Unmodified	_TASHLVPLTI_					0	0	0			REV__ENSG00000176920|ENST00000425340|FUT2	REV__ENSG00000176920|ENST00000425340|FUT2	MULTI-MATCH	A375_MHC_IP_R2	2		2	526.310949	1050.60735	-0.73431	-0.00038647	-1.1808	-0.00062148	-1.9151	-0.001008	526.3105290689921	61.823	0.35309	62.566	62.421	62.774	0.74263	-0.15723	-0.00050087	NaN	14.838	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1411300	+		52368	21428	38056	38361							0.08406602511422534
TASLFTFTTQQ	11	Unmodified	_TASLFTFTTQQ_					0	0	0		ENST00000460544.5_1_3:141905034-141944237:-|nuORF;nc|ENSG00000175066|Q6ZS86-2|GK5;ENSG00000175066|ENST00000392993|GK5	ENST00000460544.5_1_3:141905034-141944237:-|nuORF	ENST00000460544.5_1_3:141905034-141944237:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	415.6266174316406	3	415.543432	1243.60847	0.23398	9.7231E-05	-0.58647	-0.0002437	-0.35248	-0.00014647	415.8776692808246	23.218	0.30575	23.218	23.024	23.33	0					11	5	3	0	0	0	0.72909	1	6321	6321		9.7643	1.0125	1	3002200			52369	7929	38057	38362	51129	51129					-0.0035922791032589885
TASLPREL	8	Unmodified	_TASLPREL_					0	0	0		ENSG00000119401|ENST00000450136|TRIM32	ENSG00000119401|ENST00000450136|TRIM32	ENSG00000119401|ENST00000450136|TRIM32	MULTI-SECPEP	A375_MHC_IP_R1	1	444.15325927734375	2	443.753267	885.491981	0.23033	0.00010221	-0.45958	-0.00020394	-0.22925	-0.00010173	443.75310800942793	44.41	0.61521	44.41	44.061	44.676	0					24	11	4	0	0	0	0.42778	1	15468	15468		51.63	22.548	1	8123100			52370	3589	38058	38363	51130	51130					0.04465498380432109
TASLPREL	8	Unmodified	_TASLPREL_					0	0	0		ENSG00000119401|ENST00000450136|TRIM32	ENSG00000119401|ENST00000450136|TRIM32	ENSG00000119401|ENST00000450136|TRIM32	MULTI-MSMS	A375_MHC_IP_R2	2	443.6608581542969	2	443.753267	885.491981	-0.19301	-8.565E-05	-0.36912	-0.0001638	-0.56213	-0.00024945	443.75316078154907	43.547	0.85956	44.32	43.926	44.786	0.7724					28	16	3	0	0	0	0.43631	1	16258	16258		51.63	9.7902	1	7803600			52371	3589	38058	38363	51131	51131					0.04465498380432109
TASPFFRAL	9	Unmodified	_TASPFFRAL_					0	0	0		nc|ENSG00000140691|Q96C12-2|ARMC5;ENSG00000140691|ENST00000268314|ARMC5;ENST00000457010.6_2_16:31477307-31478207:+|nuORF	nc|ENSG00000140691|Q96C12-2|ARMC5	nc|ENSG00000140691|Q96C12-2|ARMC5	MULTI-SECPEP	A375_MHC_IP_R1	1	505.677001953125	2	505.276909	1008.53927	-0.41584	-0.00021011	-0.038066	-1.9234E-05	-0.45391	-0.00022935	505.27692688038445	83.558	0.86568	83.558	83.175	84.041	0					40	16	3	0	0	0	0.083712	1	30541	30541		47.749	13.646	1	7022200			52372	5178	38059	38364	51132	51132					0.03533777651421133
TASPFFRAL	9	Unmodified	_TASPFFRAL_					0	0	0		nc|ENSG00000140691|Q96C12-2|ARMC5;ENSG00000140691|ENST00000268314|ARMC5;ENST00000457010.6_2_16:31477307-31478207:+|nuORF	nc|ENSG00000140691|Q96C12-2|ARMC5	nc|ENSG00000140691|Q96C12-2|ARMC5	MULTI-MSMS	A375_MHC_IP_R2	2	505.75640869140625	2	505.276909	1008.53927	-0.72249	-0.00036506	0.11938	6.0322E-05	-0.60311	-0.00030474	505.27689410586675	82.55	0.86019	83.293	82.94	83.8	0.74293					37	16	3	0	0	0	0.13845	1	31366	31366		43.772	23.319	1	5783400			52373	5178	38059	38364	51133	51133					0.03533777651421133
TASPVIKAV	9	Unmodified	_TASPVIKAV_					0	0	0		ENSG00000121350|ENST00000240651|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	MULTI-MSMS	A375_MHC_IP_R1	1	443.6737976074219	2	443.273835	884.533118	-0.41641	-0.00018458	0.3277	0.00014526	-0.088709	-3.9322E-05	443.2739464532026	38.189	1.529	38.189	37.862	39.391	0					85	29	5	0	0	0	0.0098183	1	12870	12870		114.65	62.381	1	222180000			52374	3717	38060	38365	51134	51134					0.08623259419903206
TASPVIKAV	9	Unmodified	_TASPVIKAV_					0	0	0		ENSG00000121350|ENST00000240651|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	MULTI-SECPEP	A375_MHC_IP_R2	2	443.67364501953125	2	443.273835	884.533118	-0.84064	-0.00037263	0.36649	0.00016246	-0.47414	-0.00021018	443.27396630780254	37.274	1.7333	38.045	37.716	39.449	0.7709					84	33	5	0	0	0	0.011066	1	13575	13575		137.42	87.491	1	203610000			52375	3717	38060	38365	51135	51135					0.08623259419903206
TASRLQKYF	9	Unmodified	_TASRLQKYF_					0	0	0		ENST00000464783.1_1_3:9882380-9882515:-|nuORF;ENST00000472381.5_1_3:9882380-9885335:-|nuORF;ENST00000475470.1_1_3:9882101-9883869:-|nuORF;nc|ENSG00000156990|Q6P087-6|RPUSD3;nc|ENSG00000156990|Q6P087-2|RPUSD3;ENSG00000156990|ENST00000383820|RPUSD3;nc|ENSG00000156990|Q6P087|RPUSD3	ENST00000464783.1_1_3:9882380-9882515:-|nuORF	ENST00000464783.1_1_3:9882380-9882515:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	372.273193359375	3	371.873224	1112.59784	0.30661	0.00011402	-1.1665	-0.00043379	-0.85988	-0.00031977	371.8731139228557	36.049	1.0187	36.812	36.486	37.505	0.76338					30	19	3	0	0	0	0.76642	1	13119	13119		8.9762	5.6566	1	4328600			52376	6222	38061	38366	51136	51136					0.04604834225892773
TASRVIREL	9	Unmodified	_TASRVIREL_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-SECPEP	A375_MHC_IP_R1	1	523.2106323242188	2	522.811648	1043.60874	-0.91259	-0.00047712	-0.082612	-4.319E-05	-0.99521	-0.00052031	522.8115128171754	29.543	0.59584	29.543	29.353	29.949	0					21	11	3	0	0	0	0.1952	1	9273	9273		53.317	15.141	1	32481000			52377	1613	38062	38367	51137	51137					0.08868236600187629
TASRVIREL	9	Unmodified	_TASRVIREL_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-SECPEP	A375_MHC_IP_R2	2	523.2110595703125	2	522.811648	1043.60874	-1.2149	-0.00063514	-0.24682	-0.00012904	-1.4617	-0.00076418	522.8115934422375	28.728	0.59632	29.427	29.234	29.83	0.69872					18	11	3	0	0	0	0.41731	1	9959	9959		35.612	10.621	1	34899000			52378	1613	38062	38367	51138	51138					0.08868236600187629
TASSSHGALD	10	Unmodified	_TASSSHGALD_					0	0	0			REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-SECPEP	A375_MHC_IP_R2	2	473.1556091308594	2	473.217246	944.419939	-0.83535	-0.0003953	0.9668	0.00045751	0.13144	6.2202E-05	473.21798070907033	38.79	0.61343	39.564	39.3	39.914	0.77451					17	11	2	0	0	0	0.91556	1	14202	14202		6.2058	0	1	1507500	+		52379	21742	38063	38368	51139	51139					-0.054494607639526293
TASTLINNMRP	11	Unmodified	_TASTLINNMRP_					0	0	0			REV__nc|ENSG00000188803|Q6ZSJ9|SHISA6	REV__nc|ENSG00000188803|Q6ZSJ9|SHISA6	MULTI-SECPEP	A375_MHC_IP_R1	1	406.6607971191406	3	406.548412	1216.62341	-0.35979	-0.00014627	-2.5782	-0.0010482	-2.938	-0.0011944	406.5471709581693	27.371	0.25307	27.371	27.28	27.533	0					5	4	2	0	0	0	0.99732	1	8279	8279		4.1166	0.79699	1	726460	+		52380	22115	38064	38369	51140	51140					0.023759406860108356
TATDIALASW	10	Unmodified	_TATDIALASW_					0	0	0			REV__ENST00000576452.5_1_17:4843500-4843623:+|nuORF	REV__ENST00000576452.5_1_17:4843500-4843623:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	524.1610717773438	2	524.769114	1047.52368	-0.016137	-8.4684E-06	-0.030824	-1.6175E-05	-0.046961	-2.4644E-05	524.7689926490194	69.663	0.65674	69.663	69.326	69.983	0					30	12	3	0	0	0	0.38158	1	25350	25350		43.858	0	1	11279000	+		52381	26314	38065	38370	51141	51141					0.0018144634370855783
TATDIALASW	10	Unmodified	_TATDIALASW_					0	0	0			REV__ENST00000576452.5_1_17:4843500-4843623:+|nuORF	REV__ENST00000576452.5_1_17:4843500-4843623:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	525.1688232421875	2	524.769114	1047.52368	-0.39979	-0.0002098	-0.19235	-0.00010094	-0.59214	-0.00031074	524.7688912752177	68.926	0.65955	69.661	69.373	70.032	0.73511					25	10	3	0	0	0	0.11184	1	26098	26098		78.149	16.792	1	13742000	+		52382	26314	38065	38370	51142	51142					0.0018144634370855783
TATFGGISW	9	Unmodified	_TATFGGISW_					0	0	0			REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF	REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	470.1685485839844	2	470.232168	938.449782	-0.2538	-0.00011935	-0.10461	-4.9192E-05	-0.35842	-0.00016854	470.2321460830485	62.479	0.56427	62.479	62.198	62.762	0					24	10	3	0	0	0	0.35581	1	22638	22638		26.884	8.7487	1	5063700	+		52383	22514	38066	38371	51143	51143					-0.021904770279661534
TATFGGISW	9	Unmodified	_TATFGGISW_					0	0	0			REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF	REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	470.1682434082031	2	470.232168	938.449782	-0.9125	-0.00042909	-0.16275	-7.6531E-05	-1.0752	-0.00050562	470.2320716125646	61.669	0.70432	62.414	62.172	62.876	0.74503					26	13	3	0	0	0	0.11296	1	23399	23399		48.346	13.944	1	3798200	+		52384	22514	38066	38371	51144	51144					-0.021904770279661534
TATFQQRF	8	Unmodified	_TATFQQRF_					0	0	0		nc|ENSG00000100227|Q9BY77-2|POLDIP3;ENSG00000100227|ENST00000252115|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	MULTI-SECPEP	A375_MHC_IP_R2	2	500.0877685546875	2	499.756341	997.498129	-0.78132	-0.00039047	0.24947	0.00012467	-0.53185	-0.0002658	499.7562954989803	38.931	0.45995	39.706	39.556	40.016	0.77451					13	8	2	0	0	0	0.36486	1	14359	14359		71.134	29.039	1	2349700			52385	2139	38067	38372	51145	51145					-0.0007198338804528248
TATHFPRVY	9	Unmodified	_TATHFPRVY_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-SECPEP	A375_MHC_IP_R1	1	364.6105651855469	3	364.525936	1090.55598	0.54175	0.00019748	-0.50686	-0.00018476	0.034892	1.2719E-05	364.52564431055777	38.857	1.2211	38.857	38.371	39.592	0					63	23	4	0	0	0	0.037185	1	13218	13218		67.838	51.272	1	53903000			52386	2114	38068	38373	51146	51146					0.0143227853739063
TATHFPRVY	9	Unmodified	_TATHFPRVY_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6852416992188	2	546.285266	1090.55598	-0.19125	-0.00010448	0.024162	1.3199E-05	-0.16709	-9.1278E-05	546.2853951316331	38.857	0.91657	38.857	38.475	39.391	0					37	17	3	0	0	0	0.028087	1	13188	13188		106.94	81.949	1	13598000			52387	2114	38068	38373	51147	51147					0.0143227853739063
TATHFPRVY	9	Unmodified	_TATHFPRVY_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	A375_MHC_IP_R2	2	546.6845092773438	2	546.285266	1090.55598	-1.0046	-0.00054879	0.10032	5.4801E-05	-0.90427	-0.00049399	546.2852613006906	37.956	0.66573	38.73	38.382	39.047	0.77451					27	12	3	0	0	0	0.017727	2	13908	13908;13933		86.332	66.97	1	10329000			52388	2114	38068	38373	51148;51149	51148					0.0143227853739063
TATHFPRVY	9	Unmodified	_TATHFPRVY_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-SECPEP	A375_MHC_IP_R2	2	364.9255065917969	3	364.525936	1090.55598	-0.22648	-8.2556E-05	-0.15454	-5.6335E-05	-0.38102	-0.00013889	364.52566366427726	37.969	1.8876	38.744	37.669	39.556	0.77451					73	36	5	0	0	0	0.04395	1	13876	13876		65.474	48.908	1	42676000			52389	2114	38068	38373	51150	51150					0.0143227853739063
TATHQRIV	8	Unmodified	_TATHQRIV_					0	0	0			REV__ENSG00000148143|ENST00000277225|ZNF462	REV__ENSG00000148143|ENST00000277225|ZNF462	MULTI-SECPEP	A375_MHC_IP_R1	1	463.6439208984375	2	463.264333	924.514114	-0.16208	-7.5087E-05	0.5062	0.00023451	0.34412	0.00015942	463.2644406371072	38.552	0.30569	38.552	38.475	38.78	0					8	5	2	0	0	0	0.972	1	13121	13121		12.532	0	1	1131800	+		52390	19615	38069	38374	51151	51151					0.04883722848853722
TATILAVII	9	Unmodified	_TATILAVII_					0	0	0			REV__ENST00000523366.1_1_5:172353779-172353884:+|nuORF	REV__ENST00000523366.1_1_5:172353779-172353884:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	458.2000732421875	2	457.799686	913.584819	-0.17015	-7.7895E-05	0.85593	0.00039184	0.68578	0.00031395	457.8000730119859	77.91	0.51157	77.91	77.639	78.15	0					16	9	3	0	0	0	0.81363	1	28447	28447		1.8442	1.8442	1	1479000	+		52391	25742	38070	38375	51152	51152					0.12457003113809151
TATILAVII	9	Unmodified	_TATILAVII_					0	0	0			REV__ENST00000523366.1_1_5:172353779-172353884:+|nuORF	REV__ENST00000523366.1_1_5:172353779-172353884:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	457.799686	913.584819	-0.30736	-0.00014071	1.3722	0.00062817	1.0648	0.00048746	457.80029887867306	76.771	0.45531	77.511	77.25	77.705	0.74052	-0.1995	0.00028376	NaN	1.8442	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1790900	+		52392	25742	38070	38375							0.12457003113809151
TATKKHQTLQS	11	Unmodified	_TATKKHQTLQS_					0	0	0			REV__nc|ENSG00000198039|Q14593-2|ZNF273	REV__nc|ENSG00000198039|Q14593-2|ZNF273	MULTI-MSMS	A375_MHC_IP_R2	2	414.9459533691406	3	414.89821	1241.6728	-0.78844	-0.00032712	-0.33208	-0.00013778	-1.1205	-0.00046491	414.89812546855427	29.333	0.35542	30.032	29.93	30.286	0.69872					10	6	2	0	0	0	0.72934	1	10275	10275		9.5301	0.77832	1	2855000	+		52393	22338	38071	38376	51153	51153					0.06162971966477926
TATPFSKET	9	Unmodified	_TATPFSKET_					0	0	0		ENSG00000111727|ENST00000229330|HCFC2;HCFC2|p.T756Qfs*13|1|0.32|ENSG00000111727|chr12:104103160-104103164|ACATC/-|frameshift_variant;HCFC2|p.P584L|1|0.48|ENSG00000111727|chr12:104098353-104098353|C/T|missense_variant	ENSG00000111727|ENST00000229330|HCFC2	ENSG00000111727|ENST00000229330|HCFC2	MULTI-SECPEP	A375_MHC_IP_R1	1	491.6475524902344	2	491.248015	980.481476	-0.4811	-0.00023634	-0.030805	-1.5133E-05	-0.5119	-0.00025147	491.2477071326667	27.777	0.55453	27.777	27.482	28.037	0					14	10	2	0	0	0	0.36673	1	8502	8502		38.615	6.3093	1	2789600			52394	3024	38072	38377	51154	51154					-0.009545290646656213
TATPFSKET	9	Unmodified	_TATPFSKET_					0	0	0		ENSG00000111727|ENST00000229330|HCFC2;HCFC2|p.T756Qfs*13|1|0.32|ENSG00000111727|chr12:104103160-104103164|ACATC/-|frameshift_variant;HCFC2|p.P584L|1|0.48|ENSG00000111727|chr12:104098353-104098353|C/T|missense_variant	ENSG00000111727|ENST00000229330|HCFC2	ENSG00000111727|ENST00000229330|HCFC2	MULTI-SECPEP	A375_MHC_IP_R2	2	491.6475524902344	2	491.248015	980.481476	-0.56166	-0.00027591	-0.19869	-9.7605E-05	-0.76035	-0.00037352	491.2478935952681	27.139	0.35768	27.818	27.638	27.996	0.67857					9	6	2	0	0	0	0.23313	1	9276	9276		49.527	9.5699	1	3133500			52395	3024	38072	38377	51155	51155					-0.009545290646656213
TATSHGMDPA	10	Unmodified	_TATSHGMDPA_					0	0	0		ENST00000482818.1_1_22:29724334-29724502:-|nuORF	ENST00000482818.1_1_22:29724334-29724502:-|nuORF	ENST00000482818.1_1_22:29724334-29724502:-|nuORF	MSMS	A375_MHC_IP_R1	1	494.128662109375	2	494.213649	986.412745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.539	1	91.539	91.039	92.039	0								0	0	0	0.15158	1	33632	33632		14.838	3.198	1				52396	12530	38073	38378	51156	51156					-0.08100516636022803
TATSHSQQ	8	Unmodified	_TATSHSQQ_					0	0	0			REV__LTBP3|p.P529S|1|0.39|ENSG00000168056|chr11:65551438-65551438|G/A|missense_variant	REV__LTBP3|p.P529S|1|0.39|ENSG00000168056|chr11:65551438-65551438|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	429.65814208984375	2	430.198856	858.383159	-0.79929	-0.00034385	0.093934	4.041E-05	-0.70535	-0.00030344	430.19886586310037	36.817	0.60919	37.588	37.359	37.968	0.7709					27	11	4	0	0	0	0.972	1	13549	13549		0.6015	0	1	6915300	+		52397	26963	38074	38379	51157	51157					-0.05169712589849951
TATSPTPNTV	10	Unmodified	_TATSPTPNTV_					0	0	0		HCFC1|p.P416T|1|0.68|ENSG00000172534|chrX:153960000-153960000|G/T|missense_variant	HCFC1|p.P416T|1|0.68|ENSG00000172534|chrX:153960000-153960000|G/T|missense_variant	HCFC1|p.P416T|1|0.68|ENSG00000172534|chrX:153960000-153960000|G/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	494.67120361328125	2	494.750921	987.48729	-0.6084	-0.00030101	0.066546	3.2924E-05	-0.54185	-0.00026808	494.75100941774656	41.189	3.3492	41.189	40.66	44.01	0					150	65	5	0	0	0	0.30287	1	14685	14685		39.95	0	1	588870000			52398	14099	38075	38380	51158	51158					-0.0069543055299163825
TATSQKHKL	9	Unmodified	_TATSQKHKL_					0	0	0		nc|ENSG00000138964|Q9HBI0-3|PARVG;nc|ENSG00000138964|Q9HBI0-2|PARVG;ENSG00000138964|ENST00000444313|PARVG;ENST00000468564.6_1_22:44584872-44587985:+|nuORF	nc|ENSG00000138964|Q9HBI0-3|PARVG	nc|ENSG00000138964|Q9HBI0-3|PARVG	MULTI-SECPEP	A375_MHC_IP_R2	2	1013.9083251953125	1	1013.57382	1012.56654	-0.038409	-3.893E-05	-2.483	-0.0025167	-2.5214	-0.0025556	1013.5723888259448	106.85	0.76221	107.61	107.09	107.85	0.75977					21	14	2	0	0	0	0.65246	1	40366	40366		10.824	0	1	2705500			52399	5045	38076	38381	51159	51159					0.060762611917994036
TATTIHFW	8	Unmodified	_TATTIHFW_					0	0	0			REV__ENSG00000182372|ENST00000331222|CLN8	REV__ENSG00000182372|ENST00000331222|CLN8	MSMS	A375_MHC_IP_R1	1	488.68896484375	2	488.747985	975.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.781	1	54.781	54.281	55.281	0								0	0	0	0.16876	1	19574	19574		13.508	1.8676	1		+		52400	21687	38077	38382	51160	51160					-0.00730484274004084
TAVALLRLL	9	Unmodified	_TAVALLRLL_					0	0	0		ENSG00000110917|ENST00000228506|MLEC	ENSG00000110917|ENST00000228506|MLEC	ENSG00000110917|ENST00000228506|MLEC	MULTI-MSMS	A375_MHC_IP_R1	1	485.726806640625	2	485.326402	968.638252	-0.51673	-0.00025078	0.34777	0.00016878	-0.16897	-8.2004E-05	485.3263704776091	120.64	0.55515	120.64	120.4	120.96	0					19	10	3	0	0	0	0.0098183	1	44685	44685		114.65	38.888	1	25777000			52401	2957	38078	38383	51161	51161					0.15267800616322802
TAVALLRLL	9	Unmodified	_TAVALLRLL_					0	0	0		ENSG00000110917|ENST00000228506|MLEC	ENSG00000110917|ENST00000228506|MLEC	ENSG00000110917|ENST00000228506|MLEC	MULTI-MSMS	A375_MHC_IP_R2	2	485.726318359375	2	485.326402	968.638252	-0.54605	-0.00026501	0.18386	8.923E-05	-0.3622	-0.00017578	485.32636932073046	119.59	0.81255	120.12	119.79	120.6	0.5321					31	15	3	0	0	0	0.0098183	1	45498	45498		114.65	35.921	1	27453000			52402	2957	38078	38383	51162	51162					0.15267800616322802
TAVATVSIW	9	Unmodified	_TAVATVSIW_					0	0	0		ENSG00000105392|ENST00000221996|CRX	ENSG00000105392|ENST00000221996|CRX	ENSG00000105392|ENST00000221996|CRX	MULTI-MSMS	A375_MHC_IP_R1	1	947.9205932617188	1	947.519659	946.512382	0.18981	0.00017985	0.7665	0.00072627	0.9563	0.00090612	947.5201885426399	110.32	0.60921	110.32	110.04	110.65	0					25	11	3	0	0	0	0.03063	1	40525	40525		74.423	3.2892	1	7434900			52403	2597	38079	38384	51163	51163					0.03698669040238656
TAVATVSIW	9	Unmodified	_TAVATVSIW_					0	0	0		ENSG00000105392|ENST00000221996|CRX	ENSG00000105392|ENST00000221996|CRX	ENSG00000105392|ENST00000221996|CRX	MULTI-MATCH	A375_MHC_IP_R2	2		1	947.519659	946.512382	-0.074754	-7.0831E-05	0.12521	0.00011864	0.050461	4.7812E-05	947.5196678793476	109.46	0.65717	110.2	109.88	110.54	0.74684	-0.059297	-0.00027683	NaN	74.423	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8049900			52404	2597	38079	38384							0.03698669040238656
TAVENMPSL	9	Unmodified	_TAVENMPSL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	A375_MHC_IP_R1	1	481.1485595703125	2	481.236593	960.458632	-0.39742	-0.00019126	-1.3535E-05	-6.5136E-09	-0.39744	-0.00019126	481.23633468529533	54.906	0.50756	54.906	54.72	55.228	0					13	9	2	0	0	0	0.25276	1	19587	19587		34.102	1.797	1	999960			52405	7431	38080	38385	51164	51164					-0.02317871453783482
TAVEQWHSL	9	Unmodified	_TAVEQWHSL_					0	0	0		ENSG00000103528|ENST00000355377|SYT17	ENSG00000103528|ENST00000355377|SYT17	ENSG00000103528|ENST00000355377|SYT17	MULTI-SECPEP	A375_MHC_IP_R1	1	535.6739501953125	2	535.766906	1069.51926	-0.31419	-0.00016833	-1.7575	-0.00094161	-2.0717	-0.0011099	535.7666804534392	48.498	0.75968	48.498	48.122	48.882	0					24	14	3	0	0	0	0.76827	1	17266	17266		6.7232	6.1984	1	1855900			52406	2460	38081	38386	51165	51165					-0.012720180792030078
TAVGHRKG	8	Unmodified	_TAVGHRKG_					0	0	0			REV__ADGRA2|p.R672H|1|0.23|ENSG00000020181|chr8:37835735-37835735|G/A|missense_variant	REV__ADGRA2|p.R672H|1|0.23|ENSG00000020181|chr8:37835735-37835735|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	413.638427734375	2	413.238119	824.461684	0.30234	0.00012494	-0.066324	-2.7407E-05	0.23602	9.7531E-05	413.2380142838922	102.03	4.6644	102.03	99.825	104.49	0					178	91	3	0	0	0	0.7779	1	36690	36690		2.5775	0	1	8600500	+		52407	15326	38082	38387	51166	51166					0.04243184505901354
TAVLSARVHK	10	Unmodified	_TAVLSARVHK_					0	0	0		nc|ENSG00000066056|P35590-3|TIE1;nc|ENSG00000066056|P35590-2|TIE1;TIE1|p.T782Pfs*35|1|0.09|ENSG00000066056|chr1:43313902-43313902|A/-|frameshift_variant;ENSG00000066056|ENST00000372476|TIE1	nc|ENSG00000066056|P35590-3|TIE1	nc|ENSG00000066056|P35590-3|TIE1	MULTI-SECPEP	A375_MHC_IP_R1	1	360.61572265625	3	361.220735	1080.64038	-0.12058	-4.3555E-05	-0.74396	-0.00026873	-0.86454	-0.00031229	361.22058154199675	23.787	0.30475	23.787	23.584	23.889	0					11	5	3	0	0	0	0.93194	1	6515	6515		3.0723	0.57378	1	2114000			52408	1402	38083	38388	51167	51167					0.10328229354126961
TAVRLEAL	8	Unmodified	_TAVRLEAL_					0	0	0			REV__ENSG00000226321|ENST00000690015|CROCC2	REV__ENSG00000226321|ENST00000690015|CROCC2	MULTI-MSMS	A375_MHC_IP_R1	1	437.1816711425781	2	436.763635	871.512717	-0.36882	-0.00016109	0.43702	0.00019088	0.068199	2.9787E-05	436.7637879722223	66.606	0.50935	66.606	66.326	66.836	0					14	9	2	0	0	0	0.74945	1	24185	24185		20.454	20.454	1	1639700	+		52409	22720	38084	38389	51168	51168					0.071820887600893
TAVRSWRSLK	10	Unmodified	_TAVRSWRSLK_					0	0	0		ENST00000494294.5_1_9:139635096-139635369:-|nuORF	ENST00000494294.5_1_9:139635096-139635369:-|nuORF	ENST00000494294.5_1_9:139635096-139635369:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	402.3033752441406	3	401.903406	1202.68839	-0.17547	-7.0521E-05	0.023647	9.5036E-06	-0.15182	-6.1018E-05	401.90344255911265	26.986	0.51269	27.646	27.414	27.927	0.65992					15	9	2	0	0	0	0.71047	1	9167	9167		4.4062	0	1	7043600			52410	12689	38085	38390	51169	51169					0.09515303274179132
TAVTPQQTW	9	Unmodified	_TAVTPQQTW_					0	0	0		nc|ENSG00000152242|Q96B23-2|ARK2N;ENSG00000152242|ENST00000615052|C18orf25	nc|ENSG00000152242|Q96B23-2|ARK2N	nc|ENSG00000152242|Q96B23-2|ARK2N	MULTI-MSMS	A375_MHC_IP_R2	2	516.6609497070312	2	516.261456	1030.50836	-0.84819	-0.00043789	0.23743	0.00012257	-0.61077	-0.00031532	516.2614385248488	55.599	0.86419	56.35	55.881	56.745	0.75075					37	16	3	0	0	0	0.017727	1	21033	21033		86.332	49.826	1	6814300			52411	5956	38086	38391	51170	51170					-0.005674204534898308
TAVTSLTQLY	10	Unmodified	_TAVTSLTQLY_					0	0	0			REV__nc|ENSG00000133115|Q8TAV4-2|STOML3	REV__nc|ENSG00000133115|Q8TAV4-2|STOML3	MULTI-SECPEP	A375_MHC_IP_R1	1	548.6815185546875	2	548.797872	1095.58119	-0.34804	-0.000191	0.73606	0.00040395	0.38802	0.00021294	548.7980671497947	35.613	0.56042	35.613	35.218	35.778	0					15	10	2	0	0	0	0.8125	1	11841	11841		18.146	12.849	1	1571400	+		52412	18706	38087	38392	51171	51171					0.037222885493065405
TAVTTSEVQLL	11	Unmodified	_TAVTTSEVQLL_					0	0	0			REV__nc|ENSG00000170854|Q8IUF8-3|RIOX2	REV__nc|ENSG00000170854|Q8IUF8-3|RIOX2	MULTI-MSMS	A375_MHC_IP_R1	1	388.2957763671875	3	387.883566	1160.62887	-0.1291	-5.0077E-05	3.2006	0.0012415	3.0715	0.0011914	388.21956394965486	41.382	0.71359	41.382	41.063	41.777	0					17	13	2	0	0	0	0.71476	1	14262	14262		8.2864	0	1	1888300	+		52413	21024	38088	38393	51172	51172					0.05497942749479989
TAVYDTYYDS	10	Unmodified	_TAVYDTYYDS_					0	0	0			REV__nc|ENSG00000100490|Q00532-2|CDKL1	REV__nc|ENSG00000100490|Q00532-2|CDKL1	MSMS	A375_MHC_IP_R2	2	599.1927490234375	2	599.250951	1196.48735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.452	1	28.131	27.631	28.631	0.67857								0	0	0	0.15158	1	9377	9377		14.838	1.7958	1		+		52414	27143	38089	38394	51173	51173					-0.1030347534365319
TAWRSLRPP	9	Unmodified	_TAWRSLRPP_					0	0	0		ENST00000532739.1_1_16:16459039-16460653:+|nuORF	ENST00000532739.1_1_16:16459039-16460653:+|nuORF	ENST00000532739.1_1_16:16459039-16460653:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	362.2731628417969	3	361.873447	1082.59851	-0.36921	-0.00013361	-0.18895	-6.8375E-05	-0.55816	-0.00020198	361.873343038274	34.773	0.60622	35.537	35.222	35.829	0.76338					29	11	3	0	0	0	0.41856	1	12561	12561		23.801	0.011284	1	13122000			52415	13189	38090	38395	51174	51174					0.06051673665592716
TAYKYMFN	8	Unmodified	_TAYKYMFN_					0	0	0		ENST00000609376.5_2_2:145276374-145277833:+|nuORF	ENST00000609376.5_2_2:145276374-145277833:+|nuORF	ENST00000609376.5_2_2:145276374-145277833:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1036.8819580078125	1	1037.47608	1036.4688	0.090693	9.4092E-05	3.9946	0.0041443	4.0853	0.0042384	1038.4811191668489	108.8	0.35541	109.54	109.21	109.57	0.74684					8	6	2	0	0	0	0.972	1	41030	41030		2.0598	0.40713	1	1650500			52416	13934	38091	38396	51175	51175					-0.047972637285511155
TAYLKGDATV	10	Unmodified	_TAYLKGDATV_					0	0	0			REV__HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	REV__HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1378784179688	2	519.776939	1037.53933	-0.86348	-0.00044882	-0.44935	-0.00023356	-1.3128	-0.00068238	519.7760353216175	34.737	0.20095	35.501	35.375	35.576	0.76338					5	3	2	0	0	0	0.91909	1	12520	12520		2.9952	0	1	946740	+		52417	18467	38092	38397	51176	51176					0.022057328607388627
TAYPSLRLL	9	Unmodified	_TAYPSLRLL_					0	0	0		ENST00000556382.1_1_15:92977594-92988160:+|nuORF;ENSG00000140557|ENST00000268164|ST8SIA2	ENST00000556382.1_1_15:92977594-92988160:+|nuORF	ENST00000556382.1_1_15:92977594-92988160:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	517.440185546875	2	517.305667	1032.59678	-0.52672	-0.00027247	-2.4304	-0.0012573	-2.9572	-0.0015298	517.3058323029211	87.851	0.5612	87.851	87.593	88.154	0					22	10	3	0	0	0	0.27064	1	32246	32246		32.786	0	1	2520400			52418	5169	38093	38398	51177	51177					0.08178619856994374
TAYRFLEEM	9	Unmodified	_TAYRFLEEM_					0	0	0		nc|ENSG00000187535|Q96RY7-2|IFT140;ENSG00000187535|ENST00000426508|IFT140;ENST00000565298.5_1_16:1560947-1574065:-|nuORF	nc|ENSG00000187535|Q96RY7-2|IFT140	nc|ENSG00000187535|Q96RY7-2|IFT140	MULTI-SECPEP	A375_MHC_IP_R1	1	386.9449768066406	3	387.186592	1158.53795	0.30241	0.00011709	-0.92712	-0.00035897	-0.62471	-0.00024188	387.5197949158167	20.314	0.45753	20.314	20.129	20.587	0					9	8	2	0	0	0	0.78348	1	5131	5131		2.4985	1.722	1	1284400			52419	8832	38094	38399	51178	51178					-0.03498224499639946
TCCCFCCCCCF	11	Unmodified	_TCCCFCCCCCF_					0	0	0		ENSG00000163793|ENST00000296097|DNAJC5G	ENSG00000163793|ENST00000296097|DNAJC5G	ENSG00000163793|ENST00000296097|DNAJC5G	MSMS	A375_MHC_IP_R1	1	413.6448974609375	3	413.430125	1237.26855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.202	1	29.202	28.702	29.702	0								0	0	0	0.1636	1	9104	9104		0	0	1				52420	6720	38095	38400	51179	51179					-0.34059671633508515
TCCCFCCCCCF	11	Unmodified	_TCCCFCCCCCF_					0	0	0		ENSG00000163793|ENST00000296097|DNAJC5G	ENSG00000163793|ENST00000296097|DNAJC5G	ENSG00000163793|ENST00000296097|DNAJC5G	MSMS	A375_MHC_IP_R2	2	619.7007446289062	2	619.64155	1237.26855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.072	1	49.829	49.329	50.329	0.75737								0	0	0	0.1636	1	18434	18434		0	0	1				52421	6720	38095	38400	51180	51180					-0.34059671633508515
TCCFCWCCCC	10	Unmodified	_TCCFCWCCCC_					0	0	0		ENSG00000091844|ENST00000206262|RGS17	ENSG00000091844|ENST00000206262|RGS17	ENSG00000091844|ENST00000206262|RGS17	MSMS	A375_MHC_IP_R2	2	587.6441650390625	2	587.642407	1173.27026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.34	1	122.72	122.22	123.22	0.3766								0	0	0	0.15642	1	46873	46873		0	0	1				52422	1987	38096	38401	51181	51181					-0.30944294553228247
TCCPCCCCPCC	11	Unmodified	_TCCPCCCCPCC_					0	0	0		ENST00000599649.5_1_19:52149845-52150035:-|nuORF	ENST00000599649.5_1_19:52149845-52150035:-|nuORF	ENST00000599649.5_1_19:52149845-52150035:-|nuORF	MSMS	A375_MHC_IP_R1	1	569.6767578125	2	569.6259	1137.23725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.97	1	112.97	112.47	113.47	0								0	0	0	0.1636	1	41409	41409		0	0	1				52423	13860	38097	38402	51182	51182					-0.32588244667590516
TCDLDDDCGD	10	Unmodified	_TCDLDDDCGD_					0	0	0		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MSMS	A375_MHC_IP_R2	2	536.1722412109375	2	536.165704	1070.31685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.133	1	90.865	90.365	91.365	0.7318								0	0	0	0.15591	1	34293	34293		1.6526	0.85899	1				52424	3844	38098	38403	51183	51183					-0.21549077329086685
TCEDDEDEEL	10	Unmodified	_TCEDDEDEEL_					0	0	0		ENSG00000236104|ENST00000431845|ZBTB22	ENSG00000236104|ENST00000431845|ZBTB22	ENSG00000236104|ENST00000431845|ZBTB22	MSMS	A375_MHC_IP_R2	2	599.2186889648438	2	599.208623	1196.40269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.13	1	104.89	104.39	105.39	0.76308								0	0	0	0.1552	1	39406	39406		3.9444	0	1				52425	9748	38099	38404	51184	51184					-0.18765213942560877
TCFFREDGSY	10	Unmodified	_TCFFREDGSY_					0	0	0		ENSG00000124557|ENST00000684113|BTN1A1	ENSG00000124557|ENST00000684113|BTN1A1	ENSG00000124557|ENST00000684113|BTN1A1	MULTI-MSMS	A375_MHC_IP_R1	1	613.6827392578125	2	612.753138	1223.49172	-0.63995	-0.00039213	-0.060838	-3.7279E-05	-0.70079	-0.00042941	612.7531151314158	30.706	0.60687	30.706	30.402	31.009	0					24	11	3	0	0	0	0.69833	1	9739	9739		13.042	1.5478	1	4145000			52426	3911	38100	38405	51185	51185					-0.11108289401727234
TCGGTGYVRTV	11	Unmodified	_TCGGTGYVRTV_					0	0	0		tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1	tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1	tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	372.6427001953125	3	371.850091	1112.52844	0.34416	0.00012797	0.045516	1.6925E-05	0.38967	0.0001449	371.85003432861794	40.779	0.25253	40.779	40.66	40.913	0					6	4	2	0	0	0	0.99331	1	14031	14031		4.4062	2.3201	1	542930			52427	29769	38101	38406	51186	51186					-0.023319927851844113
TCGKGMQSRV	10	Unmodified	_TCGKGMQSRV_					0	0	0		nc|ENSG00000145808|Q8TE59|ADAMTS19;ENSG00000145808|ENST00000274487|ADAMTS19	nc|ENSG00000145808|Q8TE59|ADAMTS19	nc|ENSG00000145808|Q8TE59|ADAMTS19	MSMS	A375_MHC_IP_R1	1	533.7132568359375	2	533.760243	1065.50593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.14	1	62.14	61.64	62.64	0								0	0	0	0.15207	1	22431	22431		13.906	0.86358	1				52428	5583	38102	38407	51187	51187					-0.024199154544476187
TCGMEEEQFR	10	Unmodified	_TCGMEEEQFR_					0	0	0		DOCK3|p.P1852Qfs*45|1|0.39|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant;ENSG00000088538|ENST00000266037|DOCK3	DOCK3|p.P1852Qfs*45|1|0.39|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	DOCK3|p.P1852Qfs*45|1|0.39|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	615.6494140625	2	615.249905	1228.48526	-0.21524	-0.00013243	-0.30156	-0.00018553	-0.5168	-0.00031796	615.2499678848706	40.541	0.50815	40.541	40.304	40.813	0					16	9	3	0	0	0	0.70793	1	13947	13947		8.7454	8.7454	1	2704400			52429	784	38103	38408	51188	51188					-0.11984550624765689
TCGMEEEQFR	10	Unmodified	_TCGMEEEQFR_					0	0	0		DOCK3|p.P1852Qfs*45|1|0.39|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant;ENSG00000088538|ENST00000266037|DOCK3	DOCK3|p.P1852Qfs*45|1|0.39|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	DOCK3|p.P1852Qfs*45|1|0.39|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	615.249905	1228.48526	-0.64768	-0.00039848	-0.23577	-0.00014506	-0.88345	-0.00054354	615.249948460524	39.859	0.45731	40.633	40.422	40.879	0.77451	0.046103	4.1796E-05	NaN	8.7454	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2580100			52430	784	38103	38408							-0.11984550624765689
TCKKGKKG	8	Unmodified	_TCKKGKKG_					0	0	0		ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2;STAG2|p.M197Wfs*28|1|0.58|ENSG00000101972|chrX:124045290-124045290|A/-|frameshift_variant	ENSG00000101972|ENST00000371145|STAG2	ENSG00000101972|ENST00000371145|STAG2	MULTI-MSMS	A375_MHC_IP_R1	1	849.8971557617188	1	849.497484	848.490207	-0.68105	-0.00057855	0.69958	0.00059429	0.018524	1.5736E-05	849.4978784809834	146.74	0.18005	146.74	146.65	146.83	0					20	14	2	0	0	0	0.77861	1	56133	56133		0	0	1	155550			52431	2340	38104	38409	51189	51189					0.05990166090839466
TCKKKKKRK	9	Unmodified	_TCKKKKKRK_					0	0	0			REV__ENST00000430710.7_1_14:21853623-21853653:-|nuORF	REV__ENST00000430710.7_1_14:21853623-21853653:-|nuORF	MSMS	A375_MHC_IP_R1	1	574.4418334960938	2	574.376435	1146.73832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.86	1	148.86	148.36	149.36	0								0	0	0	0.15486	1	56836	56836		0	0	1		+		52432	24700	38105	38410	51190	51190					0.17081714678488424
TCNSCSVLE	9	Unmodified	_TCNSCSVLE_					0	0	0			REV__ENSG00000031698|ENST00000234677|SARS1	REV__ENSG00000031698|ENST00000234677|SARS1	MSMS	A375_MHC_IP_R1	1	478.19708251953125	2	478.19661	954.378667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.92	1	131.92	131.42	132.42	0								0	0	0	0.15486	1	50864	50864		7.9102	0.62092	1		+		52433	16301	38106	38411	51191	51191					-0.10034681119270772
TCQFESYIL	9	Unmodified	_TCQFESYIL_					0	0	0		ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	MSMS	A375_MHC_IP_R2	2	552.2343139648438	2	552.257525	1102.5005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.894	1	88.625	88.125	89.125	0.7318								0	0	0	0.15486	1	33439	33439		11.64	2.2572	1				52434	2572	38107	38412	51192	51192					-0.046653157652599475
TCSCCWCC	8	Unmodified	_TCSCCWCC_					0	0	0		ENSG00000178761|ENST00000357635|FAM219B;ENST00000566894.1_1_15:75194962-75197073:-|nuORF	ENSG00000178761|ENST00000357635|FAM219B	ENSG00000178761|ENST00000357635|FAM219B	MULTI-SECPEP	A375_MHC_IP_R1	1	907.9320678710938	1	908.222783	907.215507	0.020805	1.8895E-05	-1.4182	-0.001288	-1.3974	-0.0012691	908.2217866356351	117.69	0.81096	117.69	117.31	118.12	0					23	15	2	0	0	0	0.972	1	43280	43280		0	0	1	27467000			52435	8175	38108	38413	51193	51193					-0.24181222037998396
TCSCCWCC	8	Unmodified	_TCSCCWCC_					0	0	0		ENSG00000178761|ENST00000357635|FAM219B;ENST00000566894.1_1_15:75194962-75197073:-|nuORF	ENSG00000178761|ENST00000357635|FAM219B	ENSG00000178761|ENST00000357635|FAM219B	MULTI-MSMS	A375_MHC_IP_R2	2	908.26953125	1	908.222783	907.215507	-0.2592	-0.00023541	-2.3093	-0.0020974	-2.5685	-0.0023328	908.2213132381459	117.64	0.91304	118.24	117.48	118.39	0.60909					26	17	2	0	0	0	0.77861	1	44505	44505		0	0	1	12931000			52436	8175	38108	38413	51194	51194					-0.24181222037998396
TCSSCGCGC	9	Unmodified	_TCSSCGCGC_					0	0	0		nc|ENSG00000285843|P0DSO2|SCYGR9	nc|ENSG00000285843|P0DSO2|SCYGR9	nc|ENSG00000285843|P0DSO2|SCYGR9	MULTI-MSMS	A375_MHC_IP_R2	2	820.6096801757812	1	820.209242	819.201965	-1.0858	-0.00089059	0.87261	0.00071572	-0.2132	-0.00017487	820.2111193188689	6.0334	0.35613	6.4485	6.3445	6.7006	0.4151					84	46	2	0	0	0	0.77827	1	1984	1984		0	0	1	291340			52437	14947	38109	38414	51195	51195					-0.21486756545562002
TCSTPWQCTCD	11	Unmodified	_TCSTPWQCTCD_					0	0	0		ENSG00000128917|ENST00000249749|DLL4	ENSG00000128917|ENST00000249749|DLL4	ENSG00000128917|ENST00000249749|DLL4	MULTI-MSMS	A375_MHC_IP_R1	1	623.6234741210938	2	622.722666	1243.43078	-0.7995	-0.00049787	1.3853	0.00086266	0.58581	0.00036479	622.7242943024303	41.605	0.51136	41.605	41.317	41.828	0					20	9	3	0	0	0	0.7342	1	14382	14382		4.897	0.141	1	5148300			52438	4170	38110	38415	51196	51196					-0.18119885767828237
TCVCRPRFT	9	Unmodified	_TCVCRPRFT_					0	0	0		ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3;CELSR3|p.S1935Afs*4|1|0.22|ENSG00000008300|chr3:48651998-48651998|G/-|frameshift_variant;CELSR3|p.E2172Tfs*32|1|0.19|ENSG00000008300|chr3:48649175-48649176|-/AGGTTAGGGTTAGGGTTAGGGTTAGGGTT|frameshift_variant	ENSG00000008300|ENST00000164024|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	MULTI-SECPEP	A375_MHC_IP_R1	1	542.1848754882812	2	541.765329	1081.5161	-0.60464	-0.00032757	1.0893	0.00059012	0.48462	0.00026255	541.7658220635027	63.862	0.45786	63.862	63.632	64.09	0					15	8	2	0	0	0	0.75164	1	23173	23173		13.906	8.1456	1	3325500			52439	957	38111	38416	51197	51197					-0.021393077292032103
TCWRCCCCC	9	Unmodified	_TCWRCCCCC_					0	0	0			REV__ENST00000519715.1_1_5:140012405-140013200:-|nuORF	REV__ENST00000519715.1_1_5:140012405-140013200:-|nuORF	MSMS	A375_MHC_IP_R1	1	540.729248046875	2	540.654163	1079.29377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.15	1	141.15	140.65	141.65	0								0	0	0	0.15486	1	54187	54187		0.52476	0.52476	1		+		52440	25688	38112	38417	51198	51198					-0.24270112724389037
TDAEIRRFI	9	Unmodified	_TDAEIRRFI_					0	0	0		ENSG00000173575|ENST00000394196|CHD2;nc|ENSG00000173575|O14647-2|CHD2	ENSG00000173575|ENST00000394196|CHD2	ENSG00000173575|ENST00000394196|CHD2	MSMS	A375_MHC_IP_R1	1	560.9336547851562	2	560.809105	1119.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.12	1	104.12	103.62	104.62	0								0	0	0	0.1535	1	38233	38233		15.847	1.2655	1				52441	7811	38113	38418	51199	51199					0.04863932737566756
TDAELKEEF	9	Unmodified	_TDAELKEEF_					0	0	0		ENSG00000122735|ENST00000242317|DNAI1;nc|ENSG00000122735|Q9UI46-2|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	MSMS	A375_MHC_IP_R2	2	541.1690063476562	2	541.256037	1080.49752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.341	1	49.099	48.599	49.599	0.75737								0	0	0	0.15283	1	18152	18152		16.942	1.0951	1				52442	3806	38114	38419	51200	51200					-0.03950867618414122
TDAGRWVHI	9	Unmodified	_TDAGRWVHI_					0	0	0		ENST00000490957.5_1_7:11013950-11101713:+|nuORF;nc|ENSG00000106443|O94880-1|PHF14;ENSG00000106443|ENST00000634607|PHF14;nc|ENSG00000106443|O94880-2|PHF14	ENST00000490957.5_1_7:11013950-11101713:+|nuORF	ENST00000490957.5_1_7:11013950-11101713:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	527.1373291015625	2	527.775065	1053.53558	-0.41193	-0.00021741	1.3703	0.00072319	0.95833	0.00050578	527.7774396240883	87.621	0.25246	88.353	88.266	88.519	0.7318					5	4	2	0	0	0	0.69504	1	33331	33331		7.9102	3.5809	1	1587500			52443	2690	38115	38420	51201	51201					0.010951078775406131
TDAHYYHSL	9	Unmodified	_TDAHYYHSL_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-SECPEP	A375_MHC_IP_R1	1	553.1749877929688	2	553.748713	1105.48287	-0.15348	-8.4991E-05	-0.60791	-0.00033663	-0.7614	-0.00042162	553.7484805161342	48.541	0.40464	48.541	48.274	48.679	0					11	7	2	0	0	0	0.52144	1	17170	17170		11.64	0	1	906400	+		52444	21972	38116	38421	51202	51202					-0.06564894975917923
TDAISHTVLL	10	Unmodified	_TDAISHTVLL_					0	0	0		tr|U7STT8|U7STT8_FUSNUManganese/zinc/irontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01565PE=3SV=1	tr|U7STT8|U7STT8_FUSNUManganese/zinc/irontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01565PE=3SV=1	tr|U7STT8|U7STT8_FUSNUManganese/zinc/irontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01565PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	534.67138671875	2	535.298039	1068.58152	-0.76663	-0.00041038	0.71256	0.00038143	-0.054069	-2.8943E-05	535.8005085065241	42.216	0.25605	42.988	42.809	43.065	0.7724					5	4	2	0	0	0	0.8125	1	15661	15661		18.146	0	1	502970			52445	29712	38117	38422	51203	51203					0.04997708269138457
TDAKYSASL	9	Unmodified	_TDAKYSASL_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-SECPEP	A375_MHC_IP_R1	1	478.2120056152344	2	478.24019	954.465826	-0.49769	-0.00023802	-2.1213	-0.0010145	-2.619	-0.0012525	478.2389772766525	79.905	0.35839	79.905	79.676	80.034	0					9	6	2	0	0	0	0.46045	1	29163	29163		29.082	3.6823	1	1006500	+		52446	16825	38118	38423	51204	51204					-0.013228155817046172
TDALICKA	8	Unmodified	_TDALICKA_					0	0	0			REV__ENST00000476548.1_1_22:37168757-37172063:-|nuORF	REV__ENST00000476548.1_1_22:37168757-37172063:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	417.1316223144531	2	417.723121	833.431689	0.55341	0.00023117	-1.1701	-0.00048878	-0.61669	-0.00025761	417.72270487311084	38.775	0.6605	38.775	38.628	39.289	0					14	12	2	0	0	0	0.95423	1	13234	13234		12.532	0	1	1177000	+		52447	25185	38119	38424	51205	51205					0.008310647256735137
TDALICKA	8	Unmodified	_TDALICKA_					0	0	0			REV__ENST00000476548.1_1_22:37168757-37172063:-|nuORF	REV__ENST00000476548.1_1_22:37168757-37172063:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	418.2823791503906	2	417.723121	833.431689	-0.27075	-0.0001131	-0.57403	-0.00023979	-0.84478	-0.00035288	417.722817702386	37.972	0.61508	38.746	38.382	38.997	0.77451					16	11	2	0	0	0	0.75805	1	13937	13937		18.135	1.1927	1	1155900	+		52448	25185	38119	38424	51206	51206					0.008310647256735137
TDALNFIMEEM	11	Unmodified	_TDALNFIMEEM_					0	0	0			REV__ENST00000496494.5_1_8:72111577-72234167:-|nuORF	REV__ENST00000496494.5_1_8:72111577-72234167:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	657.6906127929688	2	657.291239	1312.56792	-0.33159	-0.00021795	-0.18891	-0.00012417	-0.5205	-0.00034212	657.2911752642005	110.76	0.46074	110.76	110.54	111	0					19	8	3	0	0	0	0.98524	1	40618	40618		15.248	0	1	2211400	+		52449	17314	38120	38425	51207	51207					-0.07585653616615673
TDAYYSNW	8	Unmodified	_TDAYYSNW_					0	0	0			REV__ENSG00000129514|ENST00000250448|FOXA1	REV__ENSG00000129514|ENST00000250448|FOXA1	MSMS	A375_MHC_IP_R2	2	510.1632080078125	2	510.208889	1018.40323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.12	1	62.863	62.363	63.363	0.74263								0	0	0	0.16876	1	23545	23545		12.532	0	1		+		52450	18495	38121	38426	51208	51208					-0.10523961649903413
TDCDPCYGYY	10	Unmodified	_TDCDPCYGYY_					0	0	0			REV__PRR16|p.H214Y|1|0.33|ENSG00000184838|chr5:120686434-120686434|C/T|missense_variant	REV__PRR16|p.H214Y|1|0.33|ENSG00000184838|chr5:120686434-120686434|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	600.0150146484375	2	600.204632	1198.39471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.98	1	78.98	78.48	79.48	0								0	0	0	0.15283	1	28828	28828		11.64	6.3434	1		+		52451	27843	38122	38427	51209	51209					-0.19655019673041352
TDCMDSSDE	9	Unmodified	_TDCMDSSDE_					0	0	0		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MSMS	A375_MHC_IP_R1	1	501.6764221191406	2	501.654972	1001.29539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.8	1	102.8	102.3	103.3	0								0	0	0	0.15486	1	37779	37779		3.9444	1.6417	1				52452	3844	38123	38428	51210	51210					-0.20520462357796987
TDCPCPAH	8	Unmodified	_TDCPCPAH_					0	0	0			REV__ENST00000506052.1_1_17:48539604-48540054:+|nuORF	REV__ENST00000506052.1_1_17:48539604-48540054:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	842.9243774414062	1	843.312385	842.305109	-0.80399	-0.00067802	2.8226	0.0023804	2.0186	0.0017023	843.3160467879699	124.12	0.24872	124.12	123.99	124.24	0					5	4	2	0	0	0	0.96296	1	46692	46692		2.5775	2.1191	1	28258000	+		52453	25546	38124	38429	51211	51211					-0.12235184771111562
TDDEEEQKRKY	11	Unmodified	_TDDEEEQKRKY_					0	0	0		ENSG00000151690|ENST00000392328|MFSD6	ENSG00000151690|ENST00000392328|MFSD6	ENSG00000151690|ENST00000392328|MFSD6	MULTI-MSMS	A375_MHC_IP_R1	1	721.23291015625	2	720.833702	1439.65285	-0.38046	-0.00027425	-0.25862	-0.00018642	-0.63908	-0.00046067	720.8335379974543	54.191	0.60562	54.191	53.861	54.467	0					33	11	4	0	0	0	0.72565	1	19307	19307		13.042	13.042	1	19999000			52454	5920	38125	38430	51212	51212					-0.0493886855481378
TDDEVFKPF	9	Unmodified	_TDDEVFKPF_					0	0	0		ENSG00000174529|ENST00000367167|TMEM81	ENSG00000174529|ENST00000367167|TMEM81	ENSG00000174529|ENST00000367167|TMEM81	MULTI-SECPEP	A375_MHC_IP_R1	1	549.8572998046875	2	549.261122	1096.50769	-0.48631	-0.00026711	0.4469	0.00024547	-0.039411	-2.1647E-05	549.2613105102733	83.138	0.40285	83.138	82.823	83.226	0					13	7	2	0	0	0	0.60012	1	30341	30341		12.532	0	1	746290			52455	7891	38126	38431	51213	51213					-0.03670259893192451
TDDFVKQKY	9	Unmodified	_TDDFVKQKY_					0	0	0		ENST00000470594.5_1_X:51805328-51809606:-|nuORF;nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;ENST00000490581.6_1_X:51805127-51807590:-|nuORF	ENST00000470594.5_1_X:51805328-51809606:-|nuORF	ENST00000470594.5_1_X:51805328-51809606:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	572.77587890625	2	572.287671	1142.56079	-0.45354	-0.00025956	-0.19163	-0.00010967	-0.64517	-0.00036922	572.2875577410779	54.594	2.0847	55.345	54.967	57.051	0.75075					77	40	3	0	0	0	0.32092	1	20863	20863		29.082	0.59474	1	148580000			52456	6095	38127	38432	51214	51214					-0.004788821105194074
TDDGNKWLY	9	Unmodified	_TDDGNKWLY_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000466987.1_1_3:184021130-184021370:+|nuORF;ENST00000460628.1_1_3:184020551-184021585:+|nuORF	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-SECPEP	A375_MHC_IP_R1	1	556.6561889648438	2	556.256371	1110.49819	-0.55625	-0.00030942	0.04991	2.7763E-05	-0.50634	-0.00028165	556.2565282340316	59.348	0.55765	59.348	59.041	59.599	0					15	10	2	0	0	0	0.20451	1	21385	21385		57.722	30.093	1	1606200			52457	7937	38128	38433	51215	51215					-0.05264028178703484
TDDGNKWLY	9	Unmodified	_TDDGNKWLY_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000466987.1_1_3:184021130-184021370:+|nuORF;ENST00000460628.1_1_3:184020551-184021585:+|nuORF	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-SECPEP	A375_MHC_IP_R2	2	556.6560668945312	2	556.256371	1110.49819	-1.1139	-0.00061961	-0.32668	-0.00018172	-1.4406	-0.00080133	556.2561863418247	58.647	0.4568	59.396	59.135	59.592	0.74894					14	8	2	0	0	0	0.16595	1	22195	22195		61.602	15.902	1	1417000			52458	7937	38128	38433	51216	51216					-0.05264028178703484
TDDGRVFLW	9	Unmodified	_TDDGRVFLW_					0	0	0		RCC1|p.L134F|1|0.22|ENSG00000180198|chr1:28532309-28532309|C/T|missense_variant;nc|ENSG00000180198|P18754-2|RCC1;ENSG00000180198|ENST00000683442|RCC1;ENST00000429051.1_1_1:28858469-28862138:+|nuORF	RCC1|p.L134F|1|0.22|ENSG00000180198|chr1:28532309-28532309|C/T|missense_variant;nc|ENSG00000180198|P18754-2|RCC1	nc|ENSG00000180198|P18754-2|RCC1	MULTI-MSMS	A375_MHC_IP_R1	1	555.1746826171875	2	554.774731	1107.53491	-0.55423	-0.00030747	0.45925	0.00025478	-0.094985	-5.2695E-05	554.7751375886313	99.064	0.50808	99.064	98.914	99.422	0					21	9	3	0	0	0	0.13845	1	36472	36472		43.772	23.319	1	1554300			52459	8281;15274	38129	38434	51217	51217					-0.014557315621459566
TDDGRVFLW	9	Unmodified	_TDDGRVFLW_					0	0	0		RCC1|p.L134F|1|0.22|ENSG00000180198|chr1:28532309-28532309|C/T|missense_variant;nc|ENSG00000180198|P18754-2|RCC1;ENSG00000180198|ENST00000683442|RCC1;ENST00000429051.1_1_1:28858469-28862138:+|nuORF	RCC1|p.L134F|1|0.22|ENSG00000180198|chr1:28532309-28532309|C/T|missense_variant;nc|ENSG00000180198|P18754-2|RCC1	nc|ENSG00000180198|P18754-2|RCC1	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1375122070312	2	554.774731	1107.53491	-0.76102	-0.00042219	0.36624	0.00020318	-0.39478	-0.00021901	554.7751404985022	98.446	0.45801	99.206	98.793	99.251	0.75977					15	8	2	0	0	0	0.36673	1	37291	37291		45.74	26.483	1	2271400			52460	8281;15274	38129	38434	51218	51218					-0.014557315621459566
TDDIFRASY	9	Unmodified	_TDDIFRASY_					0	0	0		tr|U7T8N3|U7T8N3_FUSNUVirulence-associatedproteinE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00110PE=4SV=1	tr|U7T8N3|U7T8N3_FUSNUVirulence-associatedproteinE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00110PE=4SV=1	tr|U7T8N3|U7T8N3_FUSNUVirulence-associatedproteinE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00110PE=4SV=1	MSMS	A375_MHC_IP_R2	2	544.1761474609375	2	544.256371	1086.49819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.246	1	43.019	42.519	43.519	0.7724								0	0	0	0.14677	1	15710	15710		26.884	4.1474	1				52461	30064	38130	38435	51219	51219					-0.04160028178716857
TDDITLIIAVD	11	Unmodified	_TDDITLIIAVD_					0	0	0		ENST00000488036.5_1_1:53553683-53555791:-|nuORF;ENSG00000079215|ENST00000265113|SLC1A3;ENSG00000162383|ENST00000371494|SLC1A7	ENST00000488036.5_1_1:53553683-53555791:-|nuORF	ENST00000488036.5_1_1:53553683-53555791:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	594.17236328125	2	594.821544	1187.62853	-0.22438	-0.00013346	0.78493	0.00046689	0.56055	0.00033343	595.3232340456982	45.789	0.55869	45.789	45.585	46.144	0					14	10	2	0	0	0	0.99227	1	16141	16141		9.3831	0	1	2884000			52462	1689	38131	38436	51220	51220					0.04222523029625336
TDDITLIIAVD	11	Unmodified	_TDDITLIIAVD_					0	0	0		ENST00000488036.5_1_1:53553683-53555791:-|nuORF;ENSG00000079215|ENST00000265113|SLC1A3;ENSG00000162383|ENST00000371494|SLC1A7	ENST00000488036.5_1_1:53553683-53555791:-|nuORF	ENST00000488036.5_1_1:53553683-53555791:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	594.821544	1187.62853	-0.68217	-0.00040577	1.278	0.00076021	0.59587	0.00035444	594.8224048868084	44.933	0.40816	45.702	45.543	45.951	0.7691	-0.04347	0.0002907	NaN	9.3831	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2016900			52463	1689	38131	38436							0.04222523029625336
TDDLGRDVFS	10	Unmodified	_TDDLGRDVFS_					0	0	0		tr|U7T2A3|U7T2A3_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00607PE=3SV=1	tr|U7T2A3|U7T2A3_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00607PE=3SV=1	tr|U7T2A3|U7T2A3_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00607PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	562.6724853515625	2	562.76456	1123.51457	-0.5673	-0.00031926	-0.11178	-6.2904E-05	-0.67907	-0.00038216	562.7646629740234	41.884	0.5093	41.884	41.674	42.183	0					17	9	3	0	0	0	0.27978	1	14437	14437		43.772	0	1	2729600			52464	29925	38132	38437	51221	51221					-0.04224947012630764
TDDNFQDIE	9	Unmodified	_TDDNFQDIE_					0	0	0			REV__ENSG00000166889|ENST00000300146|PATL1	REV__ENSG00000166889|ENST00000300146|PATL1	MSMS	A375_MHC_IP_R2	2	548.6880493164062	2	548.725101	1095.43565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.523	1	83.266	82.766	83.766	0.74293								0	0	0	0.15283	1	31347	31347		16.942	1.0951	1		+		52465	20714	38133	38438	51222	51222					-0.1082521903754241
TDDQPTDLS	9	Unmodified	_TDDQPTDLS_					0	0	0		nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	MSMS	A375_MHC_IP_R1	1	496.110595703125	2	496.214369	990.414184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.011	1	46.011	45.511	46.511	0								0	0	0	0.15486	1	16125	16125		10.824	0	1				52466	5841	38134	38439	51223	51223					-0.08140604066272772
TDDSCFDPY	9	Unmodified	_TDDSCFDPY_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-12|FN1;ENST00000492816.6_1_2:216226280-216244056:-|nuORF;ENST00000480024.1_1_2:216232580-216235161:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	A375_MHC_IP_R1	1	532.1581420898438	2	531.689672	1061.36479	-0.58363	-0.00031031	0.49311	0.00026218	-0.090522	-4.813E-05	531.689889123624	59.726	0.81348	59.726	59.346	60.159	0					32	15	3	0	0	0	0.64808	1	21423	21423		11.64	0	1	8464600			52467	3305	38135	38440	51224	51224					-0.16343635346720475
TDDSCFDPY	9	Unmodified	_TDDSCFDPY_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-12|FN1;ENST00000492816.6_1_2:216226280-216244056:-|nuORF;ENST00000480024.1_1_2:216232580-216235161:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	A375_MHC_IP_R2	2	532.19091796875	2	531.689672	1061.36479	-1.0679	-0.0005678	0.57768	0.00030715	-0.49024	-0.00026066	531.6898405406699	59.124	0.75915	59.871	59.54	60.299	0.74714					32	14	3	0	0	0	0.69674	1	22314	22314		7.2892	2.0586	1	6106200			52468	3305	38135	38440	51225	51225					-0.16343635346720475
TDDWNDFHVL	10	Unmodified	_TDDWNDFHVL_					0	0	0			REV__nc|ENSG00000185513|Q9Y468-3|L3MBTL1	REV__nc|ENSG00000185513|Q9Y468-3|L3MBTL1	MULTI-MSMS	A375_MHC_IP_R1	1	631.6768188476562	2	631.277835	1260.54112	-0.63675	-0.00040197	-0.63033	-0.00039791	-1.2671	-0.00079988	631.2771490380132	61.622	0.71556	61.622	61.227	61.943	0					28	11	3	0	0	0	0.52785	1	22204	22204		26.268	0	1	10289000	+		52469	21897	38136	38441	51226	51226					-0.07873258121298932
TDDYGYEEY	9	Unmodified	_TDDYGYEEY_					0	0	0			REV__nc|ENSG00000121774|Q07666-3|KHDRBS1	REV__nc|ENSG00000121774|Q07666-3|KHDRBS1	MSMS	A375_MHC_IP_R1	1	577.73193359375	2	577.711659	1153.40876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.057	1	73.057	72.557	73.557	0								0	0	0	0.15486	1	26592	26592		7.9102	1.7044	1		+		52470	18172	38137	38442	51227	51227					-0.1618032764874897
TDEDIEEIIY	10	Unmodified	_TDEDIEEIIY_					0	0	0			REV__ENSG00000137414|ENST00000259963|FAM8A1	REV__ENSG00000137414|ENST00000259963|FAM8A1	MULTI-SECPEP	A375_MHC_IP_R1	1	413.64373779296875	3	413.859086	1238.55543	0.62171	0.0002573	0.52019	0.00021529	1.1419	0.00047259	413.8591144802801	22.863	0.35218	22.863	22.572	22.924	0					11	6	2	0	0	0	0.94587	1	6188	6188		3.8763	3.2495	1	919380	+		52471	19005	38138	38443	51228	51228					-0.0543065048364042
TDEEDDDEDGG	11	Unmodified	_TDEEDDDEDGG_					0	0	0			REV__ENSG00000146005|ENST00000274710|PSD2	REV__ENSG00000146005|ENST00000274710|PSD2	MULTI-MSMS	A375_MHC_IP_R2	2	599.0889892578125	2	598.689109	1195.36367	-0.65424	-0.00039169	-0.25499	-0.00015266	-0.90924	-0.00054435	598.689374773882	72.612	0.61029	73.347	73.022	73.633	0.73541					20	11	2	0	0	0	0.7362	1	27577	27577		2.9952	0	1	1556300	+		52472	19511	38139	38444	51229	51229					-0.226202229726141
TDEEECCICM	10	Unmodified	_TDEEECCICM_					0	0	0		ENSG00000110315|ENST00000265981|RNF141	ENSG00000110315|ENST00000265981|RNF141	ENSG00000110315|ENST00000265981|RNF141	MSMS	A375_MHC_IP_R2	2	588.1883544921875	2	588.18981	1174.36507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.941	1	82.684	82.184	83.184	0.74293								0	0	0	0.15308	1	31127	31127		10.824	4.1008	1				52473	2927	38140	38445	51230	51230					-0.21514043005049643
TDEEKRKLLKF	11	Unmodified	_TDEEKRKLLKF_					0	0	0		ENST00000470408.5_1_7:157015856-157060446:+|nuORF;ENSG00000009335|ENST00000348165|UBE3C	ENST00000470408.5_1_7:157015856-157060446:+|nuORF	ENST00000470408.5_1_7:157015856-157060446:+|nuORF	MSMS	A375_MHC_IP_R1	1	703.9110717773438	2	703.903734	1405.79291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.066	1	81.066	80.566	81.566	0								0	0	0	0.16249	1	29621	29621		5.7319	0	1				52474	967	38141	38446	51231	51231					0.10624960240215842
TDEELQKVFD	10	Unmodified	_TDEELQKVFD_					0	0	0		tr|U7SFY6|U7SFY6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02283PE=4SV=1	tr|U7SFY6|U7SFY6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02283PE=4SV=1	tr|U7SFY6|U7SFY6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02283PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	612.693359375	2	612.29315	1222.57175	-0.16028	-9.8139E-05	0.36172	0.00022148	0.20144	0.00012334	612.7950796062602	71.44	0.40453	71.44	71.211	71.615	0					19	7	3	0	0	0	0.45919	1	25948	25948		30.637	9.0996	1	5692200			52475	29399	38142	38447	51232	51232					-0.030635245268967992
TDEELQKVFD	10	Unmodified	_TDEELQKVFD_					0	0	0		tr|U7SFY6|U7SFY6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02283PE=4SV=1	tr|U7SFY6|U7SFY6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02283PE=4SV=1	tr|U7SFY6|U7SFY6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02283PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	612.29315	1222.57175	-0.61036	-0.00037372	1.1014	0.00067436	0.49101	0.00030064	612.7956307202193	70.834	0.65714	71.568	71.302	71.959	0.73421	0.064034	0.00072877	NaN	30.637	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5774600			52476	29399	38142	38447							-0.030635245268967992
TDEIVLNSV	9	Unmodified	_TDEIVLNSV_					0	0	0			REV__nc|ENSG00000131236|Q01518-2|CAP1	REV__nc|ENSG00000131236|Q01518-2|CAP1	MULTI-MSMS	A375_MHC_IP_R1	1	495.66107177734375	2	495.261122	988.507691	-0.34586	-0.00017129	-0.37736	-0.00018689	-0.72322	-0.00035818	495.26092744440996	63.606	1.577	63.606	63.223	64.8	0					52	30	3	0	0	0	0.0097266	1	22938	22938		111.29	15.002	1	13894000	+		52477	18596	38143	38448	51233	51233					0.012977401068042127
TDEIVLNSV	9	Unmodified	_TDEIVLNSV_					0	0	0			REV__nc|ENSG00000131236|Q01518-2|CAP1	REV__nc|ENSG00000131236|Q01518-2|CAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	495.6607666015625	2	495.261122	988.507691	-0.44767	-0.00022171	-0.17811	-8.821E-05	-0.62578	-0.00030992	495.2609532217898	62.917	1.0125	63.659	63.282	64.295	0.74263					49	19	4	0	0	0	0.011321	1	23800	23800		111.29	7.5388	1	17272000	+		52478	18596	38143	38448	51234	51234					0.012977401068042127
TDEKALIEI	9	Unmodified	_TDEKALIEI_					0	0	0		nc|ENSG00000197043|P08133-2|ANXA6;ENSG00000197043|ENST00000354546|ANXA6	nc|ENSG00000197043|P08133-2|ANXA6	nc|ENSG00000197043|P08133-2|ANXA6	MULTI-SECPEP	A375_MHC_IP_R1	1	516.6716918945312	2	516.284597	1030.55464	-0.18463	-9.5322E-05	1.9683	0.0010162	1.7837	0.00092088	516.2852104092108	49.566	0.55857	49.566	49.184	49.743	0					19	10	3	0	0	0	0.47368	1	17590	17590		26.884	7.6267	1	1754600			52479	9108	38144	38449	51235	51235					0.040585996579466155
TDEKALIEI	9	Unmodified	_TDEKALIEI_					0	0	0		nc|ENSG00000197043|P08133-2|ANXA6;ENSG00000197043|ENST00000354546|ANXA6	nc|ENSG00000197043|P08133-2|ANXA6	nc|ENSG00000197043|P08133-2|ANXA6	MULTI-MATCH	A375_MHC_IP_R2	2		2	516.284597	1030.55464	-0.82981	-0.00042842	1.3593	0.00070181	0.52953	0.00027339	516.2850597087173	48.733	0.45931	49.49	49.18	49.639	0.75737	-0.038074	-0.00030397	NaN	26.884	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1429100			52480	9108	38144	38449							0.040585996579466155
TDERQGNIAE	10	Unmodified	_TDERQGNIAE_					0	0	0			REV__nc|ENSG00000167670|Q13111-2|CHAF1A	REV__nc|ENSG00000167670|Q13111-2|CHAF1A	MSMS	A375_MHC_IP_R1	1	566.651123046875	2	566.765091	1131.51563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.111	1	37.111	36.611	37.611	0								0	0	0	0.15136	1	12485	12485		15.248	0.41021	1		+		52481	20782	38145	38450	51236	51236					-0.04486732643704272
TDEVSLNFYF	10	Unmodified	_TDEVSLNFYF_					0	0	0			REV__ENSG00000071991|ENST00000262150|CDH19	REV__ENSG00000071991|ENST00000262150|CDH19	MULTI-MSMS	A375_MHC_IP_R2	2	618.1844482421875	2	617.784961	1233.55537	-0.58977	-0.00036435	0.55168	0.00034082	-0.038083	-2.3527E-05	617.7845282590329	87.709	0.80923	88.44	88.066	88.875	0.7318					36	15	4	0	0	0	0.69833	1	33328	33328		13.042	0.80181	1	3905200	+		52482	16591	38146	38451	51237	51237					-0.05206605692978883
TDEVSLNFYF	10	Unmodified	_TDEVSLNFYF_					0	0	0			REV__ENSG00000071991|ENST00000262150|CDH19	REV__ENSG00000071991|ENST00000262150|CDH19	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	617.784961	1233.55537	-0.28649	-0.00017699	-0.086069	-5.3172E-05	-0.37256	-0.00023016	617.7848875551687	88.335	0.76434	88.335	87.848	88.612	0	-0.052891	-0.00019123	NaN	13.042	31	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4284500	+		52483	16591	38146	38451							-0.05206605692978883
TDEVSLNFYF	10	Unmodified	_TDEVSLNFYF_					0	0	0			REV__ENSG00000071991|ENST00000262150|CDH19	REV__ENSG00000071991|ENST00000262150|CDH19	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	617.784961	1233.55537	-0.58977	-0.00036435	0.55168	0.00034082	-0.038083	-2.3527E-05	617.7845282590329	87.709	0.80923	88.44	88.066	88.875	0.7318	0.052891	0.00059675	NaN	13.042	36	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3905200	+		52484	16591	38146	38451							-0.05206605692978883
TDFFMVMEY	9	Unmodified	_TDFFMVMEY_					0	0	0		ENSG00000162409|ENST00000371244|PRKAA2	ENSG00000162409|ENST00000371244|PRKAA2	ENSG00000162409|ENST00000371244|PRKAA2	MSMS	A375_MHC_IP_R1	1	591.719970703125	2	591.745936	1181.47732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.303	1	73.303	72.803	73.803	0								0	0	0	0.15486	1	26685	26685		7.9102	3.9658	1				52485	6529	38147	38452	51238	51238					-0.1061607787421508
TDFFRGPT	8	Unmodified	_TDFFRGPT_					0	0	0		ENST00000424137.2_1_20:34340744-34341539:+|nuORF	ENST00000424137.2_1_20:34340744-34341539:+|nuORF	ENST00000424137.2_1_20:34340744-34341539:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	471.1295166015625	2	470.729792	939.445031	-0.0028184	-1.3267E-06	-0.25487	-0.00011997	-0.25768	-0.0001213	470.72963769089273	48.525	1.0627	48.525	47.87	48.933	0					30	20	2	0	0	0	0.70783	1	17168	17168		32.305	0	1	1803000			52486	11769	38148	38453	51239	51239					-0.027113611707136442
TDFHAEKLI	9	Unmodified	_TDFHAEKLI_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	A375_MHC_IP_R1	1	358.9257507324219	3	358.525713	1072.55531	-0.25567	-9.1663E-05	-0.4166	-0.00014936	-0.67227	-0.00024103	358.52569332598193	30.427	0.45302	30.427	30.2	30.653	0					12	8	2	0	0	0	0.76187	1	9681	9681		4.5289	0	1	2207400			52487	6242	38149	38454	51240	51240					0.021934390976639406
TDFHMHKFKV	10	Unmodified	_TDFHMHKFKV_					0	0	0			REV__ENST00000358689.8_2_8:23289787-23289952:-|nuORF	REV__ENST00000358689.8_2_8:23289787-23289952:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	645.7257080078125	2	645.326608	1288.63866	-0.33428	-0.00021572	0.37074	0.00023925	0.036459	2.3528E-05	645.3259221799789	55.858	2.1872	55.858	55.228	57.415	0					96	42	4	0	0	0	0.91442	1	20204	20204		11.495	0	1	3340000	+		52488	23862	38150	38455	51241	51241					0.0058885227385871985
TDFKRESYSF	10	Unmodified	_TDFKRESYSF_					0	0	0		ENST00000521156.5_1_6:74210408-74210483:+|nuORF	ENST00000521156.5_1_6:74210408-74210483:+|nuORF	ENST00000521156.5_1_6:74210408-74210483:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	640.7011108398438	2	640.30131	1278.58807	-0.60497	-0.00038737	0.14327	9.1735E-05	-0.4617	-0.00029563	640.3012213405894	60.134	0.45774	60.134	59.854	60.312	0					13	8	2	0	0	0	0.64017	1	21654	21654		26.268	13.226	1	1923400			52489	13007	38151	38456	51242	51242					-0.04008398570135796
TDFLERSIFDE	11	Unmodified	_TDFLERSIFDE_					0	0	0			REV__ENSG00000114388|ENST00000232501|NPRL2	REV__ENSG00000114388|ENST00000232501|NPRL2	MSMS	A375_MHC_IP_R1	1	686.7546997070312	2	686.324982	1370.63541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.34	1	69.34	68.84	69.84	0								0	0	0	0.1624	1	25160	25160		6.1918	0	1		+		52490	17823	38152	38457	51243	51243					-0.03508164089817001
TDFLKILIK	9	Unmodified	_TDFLKILIK_					0	0	0			REV__nc|ENSG00000030304|O15146-3|MUSK	REV__nc|ENSG00000030304|O15146-3|MUSK	MSMS	A375_MHC_IP_R1	1	364.2923583984375	3	364.23387	1089.67978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.82	1	137.82	137.32	138.32	0								0	0	0	0.15486	1	53037	53037		1.0715	0	1		+		52491	16298	38153	38458	51244	51244					0.13852936584976305
TDFLKILIK	9	Unmodified	_TDFLKILIK_					0	0	0			REV__nc|ENSG00000030304|O15146-3|MUSK	REV__nc|ENSG00000030304|O15146-3|MUSK	MSMS	A375_MHC_IP_R2	2	364.29229736328125	3	364.23387	1089.67978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.75	1	137.84	137.34	138.34	0.083969								0	0	0	0.15486	1	54051	54051		1.0715	0	1		+		52492	16298	38153	38458	51245	51245					0.13852936584976305
TDFLSPWAE	9	Unmodified	_TDFLSPWAE_					0	0	0			REV__ENSG00000188215|ENST00000324344|DCUN1D3	REV__ENSG00000188215|ENST00000324344|DCUN1D3	MULTI-SECPEP	A375_MHC_IP_R2	2	534.0374755859375	2	533.248015	1064.48148	-0.93288	-0.00049746	-0.75668	-0.0004035	-1.6896	-0.00090096	533.2475663536402	56.03	0.35784	56.78	56.591	56.948	0.75015					9	6	2	0	0	0	0.65246	1	21197	21197		6.7232	0	1	1326600	+		52493	22078	38154	38459	51246	51246					-0.0481852906466429
TDFLTQAETI	10	Unmodified	_TDFLTQAETI_					0	0	0			REV__ENSG00000183914|ENST00000572933|DNAH2	REV__ENSG00000183914|ENST00000572933|DNAH2	MULTI-SECPEP	A375_MHC_IP_R2	2	570.1847534179688	2	569.784961	1137.55537	-0.63948	-0.00036437	-0.51937	-0.00029593	-1.1589	-0.0006603	569.7845971822525	61.359	0.55327	62.104	61.819	62.372	0.74503					19	10	2	0	0	0	0.24721	1	23225	23225		65.474	0.54693	1	3034300	+		52494	21788	38155	38460	51247	51247					-0.00790605692986901
TDFNLNGVYY	10	Unmodified	_TDFNLNGVYY_					0	0	0		ANGPTL7|p.S301F|1|0.29|ENSG00000171819|chr1:11194884-11194884|C/T|missense_variant	ANGPTL7|p.S301F|1|0.29|ENSG00000171819|chr1:11194884-11194884|C/T|missense_variant	ANGPTL7|p.S301F|1|0.29|ENSG00000171819|chr1:11194884-11194884|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	402.57989501953125	3	402.520628	1204.54005	-0.336	-0.00013525	-2.4937	-0.0010038	-2.8297	-0.001139	402.8548728235296	20.206	0.25327	20.206	20.03	20.283	0					7	4	2	0	0	0	0.93578	1	5167	5167		1.5923	0	1	1612000			52495	130	38156	38461	51248	51248					-0.05403472490161221
TDFRNFQMVP	10	Unmodified	_TDFRNFQMVP_					0	0	0		ENSG00000186340|ENST00000617924|THBS2	ENSG00000186340|ENST00000617924|THBS2	ENSG00000186340|ENST00000617924|THBS2	MSMS	A375_MHC_IP_R1	1	627.7224731445312	2	627.800423	1253.58629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.788	1	68.788	68.288	69.288	0								0	0	0	0.1524	1	24952	24952		13.042	0.80181	1				52496	8742	38157	38462	51249	51249					-0.030357308597558585
TDFSPEWSY	9	Unmodified	_TDFSPEWSY_					0	0	0		ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2;CAMTA2|p.T534I|1|0.61|ENSG00000108509|chr17:4979721-4979721|G/A|missense_variant	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	MSMS	A375_MHC_IP_R2	2	566.214111328125	2	566.235104	1130.45566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.445	1	49.202	48.702	49.702	0.75737								0	0	0	0.15486	1	18192	18192		11.64	3.047	1				52497	2807	38158	38463	51250	51250					-0.1043542330692162
TDFTFKGHY	9	Unmodified	_TDFTFKGHY_					0	0	0			REV__ENSG00000132746|ENST00000673966|ALDH3B2	REV__ENSG00000132746|ENST00000673966|ALDH3B2	MULTI-SECPEP	A375_MHC_IP_R1	1	558.135009765625	2	558.261456	1114.50836	-0.51905	-0.00028976	0.88433	0.00049369	0.36528	0.00020392	558.2621827064945	75.422	1.3605	75.422	75.06	76.421	0					38	25	3	0	0	0	0.47368	1	27539	27539		26.884	7.6267	1	6650800	+		52498	18676	38159	38464	51251	51251					-0.04431420453465762
TDFVRRKRTP	10	Unmodified	_TDFVRRKRTP_					0	0	0		ZNF157|p.G148D|1|0.83|ENSG00000147117|chrX:47412516-47412516|G/A|missense_variant	ZNF157|p.G148D|1|0.83|ENSG00000147117|chrX:47412516-47412516|G/A|missense_variant	ZNF157|p.G148D|1|0.83|ENSG00000147117|chrX:47412516-47412516|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	425.9190673828125	3	425.914194	1274.72075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.482	1	28.161	27.661	28.661	0.67857								0	0	0	0.15435	1	9392	9392		3.5871	0.95582	1				52499	30204	38160	38465	51252	51252					0.09438090677190303
TDFYAKKW	8	Unmodified	_TDFYAKKW_					0	0	0			REV__ENSG00000197653|ENST00000673944|DNAH10	REV__ENSG00000197653|ENST00000673944|DNAH10	MULTI-MSMS	A375_MHC_IP_R2	2	529.668701171875	2	529.768917	1057.52328	-0.72464	-0.00038389	2.1393	0.0011333	1.4147	0.00074944	530.271574422873	55.065	1.0676	55.816	55.422	56.489	0.75075					34	20	3	0	0	0	0.77123	1	20836	20836		14.582	1.0738	1	3072900	+		52500	22307	38161	38466	51253	51253					-0.0031792858546850766
TDGAPAYSIY	10	Unmodified	_TDGAPAYSIY_					0	0	0		nc|ENSG00000177989|A8MYP8-2|CIMAP1B;ENST00000469660.1_1_22:50969089-50970101:-|nuORF;ENSG00000177989|ENST00000329363|ODF3B	nc|ENSG00000177989|A8MYP8-2|CIMAP1B	nc|ENSG00000177989|A8MYP8-2|CIMAP1B	MULTI-MSMS	A375_MHC_IP_R2	2	529.6454467773438	2	529.245472	1056.47639	-0.61741	-0.00032676	0.49722	0.00026315	-0.12019	-6.3609E-05	529.2455826124203	72.779	2.3883	73.514	72.721	75.109	0.7354					108	46	5	0	0	0	0.33603	1	27995	27995		37.974	3.7867	1	19715000			52501	8121	38162	38467	51254	51254					-0.049588329272637566
TDGDKGEFPPN	11	Unmodified	_TDGDKGEFPPN_					0	0	0			REV__ENSG00000047849|ENST00000683076|MAP4	REV__ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	A375_MHC_IP_R1	1	589.1616821289062	2	588.762017	1175.50948	0.046445	2.7345E-05	-0.38487	-0.00022659	-0.33842	-0.00019925	588.7617431883779	48.292	0.50621	48.292	48.071	48.577	0					17	9	3	0	0	0	0.67565	1	17066	17066		17.443	0.32975	1	3337500	+		52502	16365	38163	38468	51255	51255					-0.07125250875196798
TDGENSCRYY	10	Unmodified	_TDGENSCRYY_					0	0	0		ENSG00000103489|ENST00000261381|XYLT1	ENSG00000103489|ENST00000261381|XYLT1	ENSG00000103489|ENST00000261381|XYLT1	MSMS	A375_MHC_IP_R1	1	604.1997680664062	2	604.237852	1206.46115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.745	1	83.745	83.245	84.245	0								0	0	0	0.15451	1	30651	30651		6.2058	1.6769	1				52503	2453	38164	38469	51256	51256					-0.13382067786778862
TDGGKHVAY	9	Unmodified	_TDGGKHVAY_					0	0	0		LCN1|p.A97T|1|0.5|ENSG00000160349|chr9:135523299-135523299|G/A|missense_variant	LCN1|p.A97T|1|0.5|ENSG00000160349|chr9:135523299-135523299|G/A|missense_variant	LCN1|p.A97T|1|0.5|ENSG00000160349|chr9:135523299-135523299|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	474.15081787109375	2	474.232699	946.450845	-0.54357	-0.00025778	0.14871	7.0523E-05	-0.39486	-0.00018726	474.23272821869233	34.496	0.35453	34.496	34.253	34.608	0					11	6	2	0	0	0	0.17328	1	11420	11420		39.957	9.3208	1	10819000			52504	14290	38165	38470	51257	51257					-0.0245226265905103
TDGILLRESL	10	Unmodified	_TDGILLRESL_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;ENST00000569935.1_1_16:72137048-72138114:+|nuORF	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-SECPEP	A375_MHC_IP_R1	1	559.216796875	2	558.816596	1115.61864	-0.49174	-0.00027479	0.65826	0.00036785	0.16652	9.3053E-05	558.8170791759019	33.489	0.40693	33.489	33.291	33.698	0					21	7	4	0	0	0	0.93406	1	10978	10978		6.7232	0.99131	1	7325200			52505	5186	38166	38471	51258	51258					0.0654537981492922
TDGIVVWWGE	10	Unmodified	_TDGIVVWWGE_					0	0	0			REV__ENST00000583145.1_1_17:62747083-62747425:+|nuORF	REV__ENST00000583145.1_1_17:62747083-62747425:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	581.6896362304688	2	581.282389	1160.55022	-0.30202	-0.00017556	-0.84647	-0.00049204	-1.1485	-0.0006676	581.2820547351852	28.302	0.4535	28.302	27.987	28.44	0					15	8	2	0	0	0	0.91556	1	8590	8590		10.074	0.6908	1	5860200	+		52506	26362	38167	38472	51259	51259					-0.023628647649502454
TDGKVFQF	8	Unmodified	_TDGKVFQF_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	A375_MHC_IP_R1	1	471.6397399902344	2	471.239993	940.465432	-0.44474	-0.00020958	0.046489	2.1907E-05	-0.39825	-0.00018767	471.2400395946932	64.592	0.76333	64.592	64.242	65.005	0					35	14	3	0	0	0	0.058215	1	23349	23349		131.27	63.187	1	5153600			52507	3217	38168	38473	51260	51260					-0.007181905109064246
TDGKVFQF	8	Unmodified	_TDGKVFQF_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	A375_MHC_IP_R2	2	471.6398620605469	2	471.239993	940.465432	-0.52337	-0.00024663	0.058736	2.7679E-05	-0.46463	-0.00021895	471.2400002513077	63.684	0.86422	64.424	64.038	64.902	0.74022					35	16	3	0	0	0	0.012101	1	24149	24149		111.29	47.051	1	7514500			52508	3217	38168	38473	51261	51261					-0.007181905109064246
TDGLQSSKSW	10	Unmodified	_TDGLQSSKSW_					0	0	0			REV__nc|ENSG00000180263|Q6ZV73-2|FGD6	REV__nc|ENSG00000180263|Q6ZV73-2|FGD6	MULTI-SECPEP	A375_MHC_IP_R1	1	554.1591796875	2	554.767103	1107.51965	-0.81923	-0.00045448	0.55505	0.00030793	-0.26417	-0.00014656	554.767383760859	66.865	1.1751	66.865	66.428	67.603	0					41	14	4	0	0	0	0.90513	1	24209	24209		12.241	12.241	1	11277000	+		52509	21601	38169	38474	51262	51262					-0.029806431499764585
TDGNQNFECM	10	Unmodified	_TDGNQNFECM_					0	0	0			REV__ENSG00000146587|ENST00000396912|RBAK;REV__RBAK|p.H529Tfs*178|1|0.36|ENSG00000146587|chr7:5065038-5065038|G/-|frameshift_variant	REV__RBAK|p.H529Tfs*178|1|0.36|ENSG00000146587|chr7:5065038-5065038|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	580.11279296875	2	579.713156	1157.41176	-0.4089	-0.00023704	-0.019298	-1.1187E-05	-0.4282	-0.00024823	579.7131376467867	32.801	0.35469	32.801	32.634	32.989	0					15	6	3	0	0	0	0.62155	2	10664	10618;10664		19.257	4.4187	1	2991500	+		52510	19544;27871	38170	38475	51263;51264	51264					-0.16065099067236588
TDGNQNFECM	10	Unmodified	_TDGNQNFECM_					0	0	0			REV__ENSG00000146587|ENST00000396912|RBAK;REV__RBAK|p.H529Tfs*178|1|0.36|ENSG00000146587|chr7:5065038-5065038|G/-|frameshift_variant	REV__RBAK|p.H529Tfs*178|1|0.36|ENSG00000146587|chr7:5065038-5065038|G/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	579.713156	1157.41176	-0.4089	-0.00023704	-0.019298	-1.1187E-05	-0.4282	-0.00024823	579.7131376467867	32.801	0.35469	32.801	32.634	32.989	0	-0.091997	0.00049286	NaN	19.257	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2991500	+		52511	19544;27871	38170	38475							-0.16065099067236588
TDGQKLLLFY	10	Unmodified	_TDGQKLLLFY_					0	0	0		ENSG00000125810|ENST00000246006|CD93	ENSG00000125810|ENST00000246006|CD93	ENSG00000125810|ENST00000246006|CD93	MULTI-SECPEP	A375_MHC_IP_R2	2	599.7294311523438	2	599.329339	1196.64412	-0.48593	-0.00029123	0.20578	0.00012333	-0.28015	-0.0001679	599.3293072530956	70.471	0.35504	71.205	70.997	71.352	0.73421					10	6	2	0	0	0	0.73104	1	26758	26758		31.268	6.2774	1	1813400			52512	3990	38171	38476	51265	51265					0.05366854337330551
TDGSRCSHIFQ	11	Unmodified	_TDGSRCSHIFQ_					0	0	0		ENST00000382159.7_1_19:2513393-2513507:-|nuORF	ENST00000382159.7_1_19:2513393-2513507:-|nuORF	ENST00000382159.7_1_19:2513393-2513507:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	417.1316223144531	3	417.524266	1249.55097	0.44366	0.00018524	0.33238	0.00013878	0.77604	0.00032402	417.5245429366822	38.772	0.30493	38.772	38.577	38.882	0					6	5	2	0	0	0	0.99424	1	13234	13234		0.32927	0	1	893520			52513	11383	38172	38477	51266	51266					-0.06382393387548291
TDGTFRGTWY	10	Unmodified	_TDGTFRGTWY_					0	0	0		CYLD|p.R522W|1|0.31|ENSG00000083799|chr16:50781291-50781291|C/T|missense_variant	CYLD|p.R522W|1|0.31|ENSG00000083799|chr16:50781291-50781291|C/T|missense_variant	CYLD|p.R522W|1|0.31|ENSG00000083799|chr16:50781291-50781291|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	602.1224975585938	2	602.275095	1202.53564	-0.76674	-0.00046179	0.80753	0.00048636	0.040798	2.4572E-05	602.2757617627038	61.803	0.45385	62.546	62.37	62.824	0.74263					11	8	2	0	0	0	0.90853	1	23469	23469		10.824	0	1	1343800			52514	693	38173	38478	51267	51267					-0.057529369130861596
TDGTRDRFY	9	Unmodified	_TDGTRDRFY_					0	0	0			REV__nc|ENSG00000167114|Q6P1M0-2|SLC27A4	REV__nc|ENSG00000167114|Q6P1M0-2|SLC27A4	MULTI-MSMS	A375_MHC_IP_R1	1	566.7056884765625	2	565.764894	1129.51524	-0.4878	-0.00027598	2.834	0.0016034	2.3462	0.0013274	566.2692332411531	41.952	0.30513	41.952	41.777	42.082	0					10	5	3	0	0	0	0.46038	1	14520	14520		21.747	4.8044	1	1516100	+		52515	20733	38174	38479	51268	51268					-0.04434107572888024
TDGVSLLLP	9	Unmodified	_TDGVSLLLP_					0	0	0		ENST00000475849.1_1_6:155632464-155635574:-|nuORF	ENST00000475849.1_1_6:155632464-155635574:-|nuORF	ENST00000475849.1_1_6:155632464-155635574:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	914.883056640625	1	914.519325	913.512048	-0.31934	-0.00029204	-0.02914	-2.6649E-05	-0.34848	-0.00031869	914.5193008385595	85.559	0.6095	85.559	85.261	85.87	0					19	11	2	0	0	0	0.11296	1	31387	31387		48.346	6.2513	1	5624000			52516	12427	38175	38480	51269	51269					0.05183249320384675
TDGVSLLLP	9	Unmodified	_TDGVSLLLP_					0	0	0		ENST00000475849.1_1_6:155632464-155635574:-|nuORF	ENST00000475849.1_1_6:155632464-155635574:-|nuORF	ENST00000475849.1_1_6:155632464-155635574:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	914.519325	913.512048	-0.2402	-0.00021967	-0.14001	-0.00012805	-0.38022	-0.00034772	914.5190262134856	84.711	0.50722	85.447	85.222	85.729	0.73601	-0.056034	-4.4412E-05	NaN	48.346	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5737100			52517	12427	38175	38480							0.05183249320384675
TDHFIFTY	8	Unmodified	_TDHFIFTY_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-SECPEP	A375_MHC_IP_R1	1	522.6448974609375	2	522.245275	1042.476	-0.50044	-0.00026135	-0.051896	-2.7103E-05	-0.55234	-0.00028845	522.2452874610678	87.8	0.5095	87.8	87.542	88.052	0					12	9	2	0	0	0	0.93661	1	32269	32269		15.847	3.3156	1	1111800			52518	3385	38176	38481	51270	51270					-0.04354207856454195
TDHKSLSSSPD	11	Unmodified	_TDHKSLSSSPD_					0	0	0		ENSG00000025293|ENST00000374012|PHF20;nc|ENSG00000025293|Q9BVI0-2|PHF20	ENSG00000025293|ENST00000374012|PHF20	ENSG00000025293|ENST00000374012|PHF20	MULTI-SECPEP	A375_MHC_IP_R1	1	586.66552734375	2	587.272749	1172.53095	-0.22245	-0.00013064	0.5401	0.00031718	0.31764	0.00018654	587.2726307401026	63.352	0.87021	63.352	62.762	63.632	0					20	16	2	0	0	0	0.90673	1	22757	22757		18.373	0	1	2446500			52519	1087	38177	38482	51271	51271					-0.048418658465152475
TDHLDTQYDA	10	Unmodified	_TDHLDTQYDA_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-3|ZZEF1;ENST00000574474.1_1_17:3979912-4046255:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-SECPEP	A375_MHC_IP_R1	1	393.94000244140625	3	393.503525	1177.48875	-0.052152	-2.0522E-05	0.23604	9.2881E-05	0.18388	7.2359E-05	393.5036064432175	24.662	0.709	24.662	24.194	24.903	0					28	13	3	0	0	0	0.94269	1	7038	7038		5.7834	0	1	4299400			52520	1592	38178	38483	51272	51272					-0.09289841254894782
TDHLFLDKAT	10	Unmodified	_TDHLFLDKAT_					0	0	0		ASAP1|p.S910F|1|0.52|ENSG00000153317|chr8:130061042-130061042|G/A|missense_variant	ASAP1|p.S910F|1|0.52|ENSG00000153317|chr8:130061042-130061042|G/A|missense_variant	ASAP1|p.S910F|1|0.52|ENSG00000153317|chr8:130061042-130061042|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	387.26812744140625	3	387.536389	1159.58734	-0.43612	-0.00016901	0.53872	0.00020877	0.1026	3.9761E-05	387.53652219908355	24.291	0.35497	24.934	24.755	25.11	0.64368					10	6	2	0	0	0	0.92957	1	8024	8024		3.3196	0	1	20234000			52521	188	38179	38484	51273	51273					0.013928067807910338
TDHLLLEEE	9	Unmodified	_TDHLLLEEE_					0	0	0			REV__nc|ENSG00000125503|Q9BZL4-5|PPP1R12C	REV__nc|ENSG00000125503|Q9BZL4-5|PPP1R12C	MULTI-SECPEP	A375_MHC_IP_R2	2	549.7022705078125	2	549.769311	1097.52407	-0.602	-0.00033096	-4.0827	-0.0022446	-4.6847	-0.0025755	550.2693052332075	44.016	0.65562	44.786	44.38	45.035	0.76909					18	12	2	0	0	0	0.65246	1	16450	16450		21.747	5.5975	1	873370	+		52522	18346	38180	38485	51274	51274					-0.020791787270809436
TDHMVPDTESY	11	Unmodified	_TDHMVPDTESY_					0	0	0		nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-MSMS	A375_MHC_IP_R1	1	647.7262573242188	2	647.766442	1293.51833	-0.41726	-0.00027029	-1.2127	-0.00078558	-1.63	-0.0010559	647.7656003713716	76.558	0.61082	76.558	76.37	76.981	0					17	11	2	0	0	0	0.73332	1	28040	28040		5.7319	0.97584	1	846580			52523	6631	38181	38486	51275	51275					-0.11668645301074321
TDHYELDFTH	10	Unmodified	_TDHYELDFTH_					0	0	0			REV__CDCP2|p.A74T|1|0.95|ENSG00000157211|chr1:54144673-54144673|C/T|missense_variant	REV__CDCP2|p.A74T|1|0.95|ENSG00000157211|chr1:54144673-54144673|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	426.9189147949219	3	426.519287	1276.53603	-0.48183	-0.00020551	-0.48724	-0.00020782	-0.96908	-0.00041333	426.5190045395005	60.942	0.80714	61.687	61.314	62.121	0.74504					39	15	3	0	0	0	0.62155	1	23032	23032		12.175	1.8595	1	16881000	+		52524	15620	38182	38487	51276	51276					-0.09117561983907763
TDHYFLRY	8	Unmodified	_TDHYFLRY_					0	0	0		nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT	MSMS	A375_MHC_IP_R1	1	557.7662353515625	2	557.769448	1113.52434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.856	1	61.856	61.356	62.356	0								0	0	0	0.14605	1	22319	22319		49.933	28.186	1				52525	3874;14576	38183	38488	51277	51277					-0.027877142165834812
TDHYFLRY	8	Unmodified	_TDHYFLRY_					0	0	0		nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT	MULTI-MSMS	A375_MHC_IP_R2	2	558.1690673828125	2	557.769448	1113.52434	-1.0457	-0.00058327	-0.28586	-0.00015944	-1.3316	-0.00074272	557.769467013098	60.929	0.50533	61.674	61.414	61.919	0.74503					16	9	2	0	0	0	0.13337	1	23072	23072		88.954	65.805	1	3407700			52526	3874;14576	38183	38488	51278	51278					-0.027877142165834812
TDIANILSVAK	11	Unmodified	_TDIANILSVAK_					0	0	0			REV__ENSG00000145781|ENST00000274458|COMMD10	REV__ENSG00000145781|ENST00000274458|COMMD10	MULTI-SECPEP	A375_MHC_IP_R2	2	382.9368591308594	3	382.223923	1143.64994	-0.345	-0.00013187	1.4484	0.0005536	1.1034	0.00042173	382.22432372024736	23.829	0.20388	24.459	24.333	24.537	0.63014					6	3	2	0	0	0	0.91844	1	7748	7748		21.241	8.3688	1	6233300	+		52527	19492	38184	38489	51279	51279					0.08385952848993838
TDIAREFVT	9	Unmodified	_TDIAREFVT_					0	0	0			REV__ENSG00000159459|ENST00000290650|UBR1	REV__ENSG00000159459|ENST00000290650|UBR1	MSMS	A375_MHC_IP_R2	2	526.1828002929688	2	526.274564	1050.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.743	1	70.477	69.977	70.977	0.73421								0	0	0	0.14851	1	26434	26434		24.021	1.2843	1		+		52528	20123	38185	38490	51280	51280					0.011328487180207958
TDIEEKDNP	9	Unmodified	_TDIEEKDNP_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	A375_MHC_IP_R2	2	531.1556396484375	2	530.743293	1059.47203	-0.91228	-0.00048419	1.045	0.00055465	0.13276	7.046E-05	530.7441510971526	28.255	0.2532	28.934	28.757	29.01	0.67857					6	4	2	0	0	0	0.6656	1	9712	9712		10.074	0	1	1007800	+		52529	17711	38186	38491	51281	51281					-0.05532342140850233
TDIEEKDNP	9	Unmodified	_TDIEEKDNP_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	A375_MHC_IP_R2	2	530.6868896484375	2	530.743293	1059.47203	-0.91228	-0.00048419	1.045	0.00055465	0.13276	7.046E-05	530.7441510971526	28.255	0.2532	28.934	28.757	29.01	0.67857					6	4	2	0	0	0	0.71541	1	9688	9688		11.64	2.2929	1	1007800	+		52530	17711	38186	38491	51282	51282					-0.05532342140850233
TDIFAMGTLE	10	Unmodified	_TDIFAMGTLE_					0	0	0			REV__ENSG00000071894|ENST00000616140|CPSF1	REV__ENSG00000071894|ENST00000616140|CPSF1	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6880493164062	2	549.262807	1096.51106	-0.80509	-0.00044221	-1.396	-0.00076676	-2.2011	-0.001209	549.7632593172016	82.455	0.50539	83.198	82.992	83.497	0.74293					12	9	2	0	0	0	0.78945	1	31347	31347		19.257	0	1	793300	+		52531	16590	38187	38492	51283	51283					-0.03333333110822423
TDIFKGHFL	9	Unmodified	_TDIFKGHFL_					0	0	0			REV__nc|ENSG00000289720|Q96J02-3|ITCH	REV__nc|ENSG00000289720|Q96J02-3|ITCH	MULTI-SECPEP	A375_MHC_IP_R2	2	360.26220703125	3	359.862437	1076.56548	-0.49323	-0.00017749	-0.39195	-0.00014105	-0.88518	-0.00031854	359.86228963896366	49.615	0.55619	50.373	49.995	50.551	0.75737					15	10	2	0	0	0	0.78348	1	18683	18683		2.4985	2.2916	1	1950300	+		52532	16717	38188	38493	51284	51284					0.030260468229016624
TDILKEKY	8	Unmodified	_TDILKEKY_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-MSMS	A375_MHC_IP_R1	1	505.975830078125	2	505.281857	1008.54916	-0.37481	-0.00018939	0.055751	2.817E-05	-0.31906	-0.00016122	505.28175321119596	31.474	0.35427	31.474	31.16	31.514	0					8	6	2	0	0	0	0.6994	1	10059	10059		34.932	14.518	1	1288800			52533	2480	38189	38494	51285	51285					0.04522920866145341
TDILKEKY	8	Unmodified	_TDILKEKY_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-SECPEP	A375_MHC_IP_R2	2	505.97552490234375	2	505.281857	1008.54916	-0.72348	-0.00036556	0.21234	0.00010729	-0.51114	-0.00025827	505.2817637391746	30.705	0.30154	31.424	31.266	31.567	0.71857					8	5	2	0	0	0	0.90375	1	10830	10830		29.841	18.346	1	1582400			52534	2480	38189	38494	51286	51286					0.04522920866145341
TDIQDSKF	8	Unmodified	_TDIQDSKF_					0	0	0			REV__ENSG00000107611|ENST00000377833|CUBN	REV__ENSG00000107611|ENST00000377833|CUBN	MULTI-SECPEP	A375_MHC_IP_R2	2	477.6320495605469	2	477.232364	952.450176	-0.92228	-0.00044014	0.48577	0.00023182	-0.43651	-0.00020832	477.23251354425435	36.579	0.45772	37.35	37.106	37.564	0.7709					12	8	2	0	0	0	0.95424	1	13370	13370		19.257	1.1106	1	1505400	+		52535	17491	38190	38495	51287	51287					-0.02795102098764346
TDIRLLANL	9	Unmodified	_TDIRLLANL_					0	0	0		ENSG00000239900|ENST00000623063|ADSL;nc|ENSG00000239900|P30566-2|ADSL	ENSG00000239900|ENST00000623063|ADSL	ENSG00000239900|ENST00000623063|ADSL	MULTI-SECPEP	A375_MHC_IP_R2	2	514.4332885742188	2	514.808574	1027.60259	-1.095	-0.0005637	0.53947	0.00027773	-0.5555	-0.00028598	514.808723190483	21.067	0.30314	21.686	21.525	21.828	0.61932					9	5	2	0	0	0	0.73363	1	6652	6652		15.847	0	1	1521900			52536	9769	38191	38496	51288	51288					0.0898971836866167
TDISALKLL	9	Unmodified	_TDISALKLL_					0	0	0			REV__ENSG00000178358|ENST00000317834|OR2D3	REV__ENSG00000178358|ENST00000317834|OR2D3	MULTI-SECPEP	A375_MHC_IP_R1	1	487.6820373535156	2	487.30005	972.585547	-0.14665	-7.1464E-05	-0.13409	-6.5342E-05	-0.28074	-0.00013681	487.2999074605118	91.978	1.3175	91.978	91.706	93.023	0					37	25	2	0	0	0	0.24548	1	33926	33926		29.082	0	1	3930900	+		52537	21502	38192	38497	51289	51289					0.09815797762848888
TDITKGVQY	9	Unmodified	_TDITKGVQY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.L662F|1|0.19|ENSG00000167658|chr19:3977902-3977902|G/A|missense_variant	ENSG00000167658|ENST00000309311|EEF2;EEF2|p.L662F|1|0.19|ENSG00000167658|chr19:3977902-3977902|G/A|missense_variant	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	A375_MHC_IP_R1	1	513.1945190429688	2	512.769114	1023.52368	-0.09061	-4.6462E-05	-0.54839	-0.0002812	-0.639	-0.00032766	512.7687189334032	38.935	0.45675	38.935	38.628	39.085	0					14	8	2	0	0	0	0.27064	1	13210	13210		32.786	7.3864	1	2464800			52538	7207;822	38193	38498	51290	51290					0.01285446343717922
TDKAVEAFIQQ	11	Unmodified	_TDKAVEAFIQQ_					0	0	0		ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	MULTI-SECPEP	A375_MHC_IP_R2	2	625.7244873046875	2	625.324785	1248.63502	-0.71073	-0.00044444	0.082882	5.1828E-05	-0.62785	-0.00039261	625.3247937800813	84.147	0.91667	84.887	84.559	85.476	0.73962					35	17	3	0	0	0	0.91844	1	31940	31940		32.037	14.595	1	9133400			52539	6522	38194	38499	51291	51291					0.02064460981000593
TDKDRGEQ	8	Unmodified	_TDKDRGEQ_					0	0	0			REV__ENST00000468639.5_1_9:75766818-75774345:+|nuORF	REV__ENST00000468639.5_1_9:75766818-75774345:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	474.3014831542969	2	474.722695	947.430838	-0.79926	-0.00037943	-0.20469	-9.7173E-05	-1.004	-0.0004766	474.72255838278846	49.87	0.61039	50.624	50.294	50.904	0.75406					26	11	3	0	0	0	0.972	1	18852	18852		1.8442	1.8442	1	6348700	+		52540	25085	38195	38500	51292	51292					-0.0449805838965176
TDKFFWRVTTY	11	Unmodified	_TDKFFWRVTTY_					0	0	0		tr|U7SEM2|U7SEM2_FUSNUCRISPR-associatedendoribonucleasecas6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02350PE=4SV=1	tr|U7SEM2|U7SEM2_FUSNUCRISPR-associatedendoribonucleasecas6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02350PE=4SV=1	tr|U7SEM2|U7SEM2_FUSNUCRISPR-associatedendoribonucleasecas6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02350PE=4SV=1	MSMS	A375_MHC_IP_R1	1	488.6169738769531	3	488.58211	1462.7245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.404	1	27.404	26.904	27.904	0								0	0	0	0.16275	1	8309	8309		4.4062	0	1				52541	29384	38196	38501	51293	51293					0.011647156603658004
TDKLNLMALG	10	Unmodified	_TDKLNLMALG_					0	0	0		ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	MULTI-SECPEP	A375_MHC_IP_R2	2	358.9361877441406	3	359.19872	1074.57433	-0.47194	-0.00016952	0.4882	0.00017536	0.016256	5.8391E-06	359.1986817402709	23.702	0.45942	24.332	24.18	24.64	0.63015					17	8	4	0	0	0	0.91932	1	7653	7653		11.518	11.518	1	3529300			52542	3083	38197	38502	51294	51294					0.040026523970709604
TDKNKLIGF	9	Unmodified	_TDKNKLIGF_					0	0	0		tr|U7SU18|U7SU18_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00984PE=4SV=1	tr|U7SU18|U7SU18_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00984PE=4SV=1	tr|U7SU18|U7SU18_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00984PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	518.693603515625	2	518.295299	1034.57605	-0.50829	-0.00026345	-0.40655	-0.00021071	-0.91484	-0.00047416	518.294892778692	100.36	0.50644	100.36	100.08	100.58	0					16	9	2	0	0	0	0.64136	1	36922	36922		12.241	0	1	1673400			52543	29733	38198	38503	51295	51295					0.060140294773418645
TDKNKLIGF	9	Unmodified	_TDKNKLIGF_					0	0	0		tr|U7SU18|U7SU18_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00984PE=4SV=1	tr|U7SU18|U7SU18_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00984PE=4SV=1	tr|U7SU18|U7SU18_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00984PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	518.7147216796875	2	518.295299	1034.57605	-0.50999	-0.00026433	-0.56558	-0.00029314	-1.0756	-0.00055746	518.2950203997262	99.348	0.562	100.11	99.858	100.42	0.75977					15	10	2	0	0	0	0.32092	2	37658	37658;37708		29.082	0	1	1602900			52544	29733	38198	38503	51296;51297	51296					0.060140294773418645
TDKPFRSTI	9	Unmodified	_TDKPFRSTI_					0	0	0			REV__nc|ENSG00000170185|Q8NB14-2|USP38	REV__nc|ENSG00000170185|Q8NB14-2|USP38	MULTI-SECPEP	A375_MHC_IP_R1	1	533.172119140625	2	532.790381	1063.56621	-0.70738	-0.00037689	0.30825	0.00016423	-0.39913	-0.00021265	532.7904507412751	58.629	0.45787	58.629	58.328	58.786	0					9	8	2	0	0	0	0.65246	1	20963	20963		3.5965	0	1	1113500	+		52545	20972	38199	38504	51298	51298					0.03696841471969492
TDKQDLIF	8	Unmodified	_TDKQDLIF_					0	0	0			REV__ENSG00000166024|ENST00000298999|R3HCC1L	REV__ENSG00000166024|ENST00000298999|R3HCC1L	MSMS	A375_MHC_IP_R2	2	490.17413330078125	2	490.258382	978.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.307	1	67.044	66.544	67.544	0.73631								0	0	0	0.16876	1	25127	25127		23.148	0	1		+		52546	20646	38200	38505	51299	51299					0.012100613149982564
TDKRIFTF	8	Unmodified	_TDKRIFTF_					0	0	0		nc|ENSG00000144366|Q9UBP9-2|GULP1;nc|ENSG00000144366|Q9UBP9-4|GULP1;ENSG00000144366|ENST00000409830|GULP1	nc|ENSG00000144366|Q9UBP9-2|GULP1	nc|ENSG00000144366|Q9UBP9-2|GULP1	MULTI-MSMS	A375_MHC_IP_R1	1	514.2186279296875	2	514.282192	1026.54983	-0.42073	-0.00021637	-0.027635	-1.4212E-05	-0.44836	-0.00023058	514.2821620358544	56.016	0.76083	56.016	55.687	56.447	0					22	14	2	0	0	0	0.43631	1	20062	20062		51.63	11.672	1	7127600			52547	5480	38201	38506	51300	51300					0.03761760305860662
TDKRIFTF	8	Unmodified	_TDKRIFTF_					0	0	0		nc|ENSG00000144366|Q9UBP9-2|GULP1;nc|ENSG00000144366|Q9UBP9-4|GULP1;ENSG00000144366|ENST00000409830|GULP1	nc|ENSG00000144366|Q9UBP9-2|GULP1	nc|ENSG00000144366|Q9UBP9-2|GULP1	MULTI-MSMS	A375_MHC_IP_R2	2	514.218505859375	2	514.282192	1026.54983	-0.8971	-0.00046136	0.31188	0.0001604	-0.58522	-0.00030097	514.2823906597993	55.053	0.61139	55.804	55.473	56.084	0.75075					24	11	3	0	0	0	0.34256	1	20825	20825		55.503	24.866	1	6252600			52548	5480	38201	38506	51301	51301					0.03761760305860662
TDKSPFVIY	9	Unmodified	_TDKSPFVIY_					0	0	0		ENSG00000132170|ENST00000651735|PPARG;nc|ENSG00000132170|P37231-2|PPARG;nc|ENSG00000132170|P37231|PPARG	ENSG00000132170|ENST00000651735|PPARG	ENSG00000132170|ENST00000651735|PPARG	MULTI-SECPEP	A375_MHC_IP_R2	2	535.6702270507812	2	535.281857	1068.54916	-0.75937	-0.00040648	2.4311	0.0013013	1.6717	0.00089483	535.7859937482907	64.377	0.51057	65.117	64.902	65.412	0.74023					11	9	2	0	0	0	0.74412	1	24373	24373		6.2058	0	1	1369700			52549	4378	38202	38507	51302	51302					0.017629208661446683
TDKTEKVAVD	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))TDKTEKVAVD_					1	0	0		ENSG00000278289|ENST00000620654|CT45A6;ENSG00000273696|ENST00000610598|CT45A7;ENSG00000269096|ENST00000598716|CT45A3;ENSG00000268940|ENST00000594565|CT45A1;ENSG00000228836|ENST00000698999|CT45A5;ENSG00000278085|ENST00000611660|CT45A8;ENSG00000271449|ENST00000612907|CT45A2;ENSG00000270946|ENST00000620704|CT45A9;ENSG00000269586|ENST00000682849|CT45A10	ENSG00000278289|ENST00000620654|CT45A6	ENSG00000278289|ENST00000620654|CT45A6	MULTI-MSMS	A375_MHC_IP_R1	1	574.6956176757812	2	574.295693	1146.57683	-0.31382	-0.00018022	0.055989	3.2154E-05	-0.25783	-0.00014807	574.2957737108862	25.588	0.25587	25.588	25.408	25.664	0					12	4	4	0	0	0	0.020113	1	7495	7495		103.69	62.966	1	22505000			52550	9712	38203	38508	51303	51303					0.009407793357240735
TDKTEKVAVD	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))TDKTEKVAVD_					1	0	0		ENSG00000278289|ENST00000620654|CT45A6;ENSG00000273696|ENST00000610598|CT45A7;ENSG00000269096|ENST00000598716|CT45A3;ENSG00000268940|ENST00000594565|CT45A1;ENSG00000228836|ENST00000698999|CT45A5;ENSG00000278085|ENST00000611660|CT45A8;ENSG00000271449|ENST00000612907|CT45A2;ENSG00000270946|ENST00000620704|CT45A9;ENSG00000269586|ENST00000682849|CT45A10	ENSG00000278289|ENST00000620654|CT45A6	ENSG00000278289|ENST00000620654|CT45A6	MULTI-MSMS	A375_MHC_IP_R2	2	574.695068359375	2	574.295693	1146.57683	-0.6435	-0.00036956	-0.2945	-0.00016913	-0.93799	-0.00053869	574.2954990312222	25.05	0.20221	25.693	25.568	25.77	0.64368					9	3	3	0	0	0	0.18027	1	8347	8347		64.692	6.9696	1	16554000			52551	9712	38203	38508	51304	51304					0.009407793357240735
TDKTLLICKY	10	Unmodified	_TDKTLLICKY_					0	0	0		ENSG00000188001|ENST00000345063|TPRG1	ENSG00000188001|ENST00000345063|TPRG1	ENSG00000188001|ENST00000345063|TPRG1	MSMS	A375_MHC_IP_R1	1	599.2301635742188	2	599.331024	1196.6475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.609	1	52.609	52.109	53.109	0								0	0	0	0.1524	1	18719	18719		13.042	0	1				52552	8872	38204	38509	51305	51305					0.05703781119677842
TDKVPQSPQQ	10	Unmodified	_TDKVPQSPQQ_					0	0	0			REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR	REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR	MULTI-SECPEP	A375_MHC_IP_R2	2	563.67431640625	2	564.288202	1126.56185	-0.33175	-0.0001872	0.45441	0.00025642	0.12266	6.9214E-05	564.28795513668	47.459	0.40758	48.221	47.97	48.378	0.76127					13	7	2	0	0	0	0.91909	1	17838	17838		2.9952	0	1	2304900	+		52553	19222	38205	38510	51306	51306					0.0036333225839371153
TDKVRKETAR	10	Unmodified	_TDKVRKETAR_					0	0	0			REV__ENSG00000135338|ENST00000369846|LCA5	REV__ENSG00000135338|ENST00000369846|LCA5	MULTI-MSMS	A375_MHC_IP_R1	1	401.9314270019531	3	401.898321	1202.67313	-0.40435	-0.00016251	2.4312	0.00097711	2.0269	0.0008146	401.8996081084919	28.364	0.30197	28.364	28.088	28.39	0					7	5	2	0	0	0	0.71076	1	8711	8711		7.4771	2.0744	1	1179200	+		52554	18845	38206	38511	51307	51307					0.07990391686325893
TDKWIKKMWY	10	Unmodified	_TDKWIKKMWY_					0	0	0		L1MB4_dup3225|chr7:20663211-20663687:+|1.1155096630173194|0.0508094464944072|4.46|407.0|3|1|sense	L1MB4_dup3225|chr7:20663211-20663687:+|1.1155096630173194|0.0508094464944072|4.46|407.0|3|1|sense	L1MB4_dup3225|chr7:20663211-20663687:+|1.1155096630173194|0.0508094464944072|4.46|407.0|3|1|sense	MULTI-SECPEP	A375_MHC_IP_R1	1	466.1191101074219	3	466.912803	1397.71658	-0.58808	-0.00027458	-2.13	-0.0009945	-2.718	-0.0012691	466.91175655788703	26.127	0.30463	26.127	26.017	26.322	0					8	5	2	0	0	0	0.94269	1	7702	7702		3.3196	0.47636	1	2022900			52555	14255	38207	38512	51308	51308					0.033628651392518805
TDKYELPKIY	10	Unmodified	_TDKYELPKIY_					0	0	0		tr|U7SL44|U7SL44_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01976PE=4SV=1	tr|U7SL44|U7SL44_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01976PE=4SV=1	tr|U7SL44|U7SL44_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01976PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	424.5730895996094	3	423.895695	1268.66525	-0.16589	-7.0321E-05	1.8282	0.00077498	1.6623	0.00070466	423.8960713391443	67.216	0.55792	67.953	67.75	68.308	0.73631					14	10	2	0	0	0	0.94269	1	25540	25540		3.3196	0	1	563280			52556	29492	38208	38513	51309	51309					0.041668196461841944
TDLALVSEPPV	11	Unmodified	_TDLALVSEPPV_					0	0	0		tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	571.2111206054688	2	570.810979	1139.6074	-0.25501	-0.00014556	0.14366	8.2003E-05	-0.11135	-6.356E-05	570.810964039574	31.774	0.51056	31.774	31.565	32.075	0					19	9	3	0	0	0	0.78118	1	10197	10197		20.415	0	1	7081700			52557	30053	38209	38514	51310	51310					0.04318557720762328
TDLARRHRS	9	Unmodified	_TDLARRHRS_					0	0	0			REV__ENSG00000105329|ENST00000221930|TGFB1	REV__ENSG00000105329|ENST00000221930|TGFB1	MULTI-MSMS	A375_MHC_IP_R1	1	556.7088623046875	2	556.307595	1110.60064	-0.20239	-0.00011259	0.37364	0.00020786	0.17124	9.5263E-05	556.3077113407604	126.43	0.90933	126.43	126.15	127.06	0					30	17	2	0	0	0	0.68705	1	48287	48287		8.1555	8.1555	1	16083000	+		52558	17373	38210	38515	51311	51311					0.0497610240342965
TDLDVQKKSV	10	Unmodified	_TDLDVQKKSV_					0	0	0		ENST00000530781.5_1_1:26759052-26759420:+|nuORF	ENST00000530781.5_1_1:26759052-26759420:+|nuORF	ENST00000530781.5_1_1:26759052-26759420:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	566.7062377929688	2	566.814053	1131.61355	-0.40818	-0.00023136	1.2314	0.00069799	0.82324	0.00046663	566.8146865382381	30.472	0.30357	31.191	31.013	31.317	0.71857					9	5	2	0	0	0	0.93194	1	10661	10661		5.7319	0	1	2863300			52559	13156	38211	38516	51312	51312					0.05301075952274914
TDLDVQKKSV	10	Unmodified	_TDLDVQKKSV_					0	0	0		ENST00000530781.5_1_1:26759052-26759420:+|nuORF	ENST00000530781.5_1_1:26759052-26759420:+|nuORF	ENST00000530781.5_1_1:26759052-26759420:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	566.814053	1131.61355	-0.41265	-0.0002339	1.5192	0.0008611	1.1065	0.0006272	566.81496493348	31.324	0.35427	31.324	31.16	31.514	0	0.066808	0.00010835	NaN	5.7319	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2913200			52560	13156	38211	38516							0.05301075952274914
TDLEIKFQY	9	Unmodified	_TDLEIKFQY_					0	0	0		nc|ENSG00000128604|Q13568-5|IRF5;nc|ENSG00000128604|Q13568-4|IRF5;nc|ENSG00000128604|Q13568|IRF5;nc|ENSG00000128604|Q13568-3|IRF5;ENSG00000128604|ENST00000357234|IRF5	nc|ENSG00000128604|Q13568-5|IRF5	nc|ENSG00000128604|Q13568-5|IRF5	MULTI-MSMS	A375_MHC_IP_R1	1	579.7195434570312	2	578.797872	1155.58119	-0.22873	-0.00013239	0.23658	0.00013693	0.0078546	4.5462E-06	579.7991877841747	47.32	0.46165	47.32	47.055	47.517	0					17	8	3	0	0	0	0.4867	1	16645	16645		20.454	2.3073	1	1428700			52561	4153	38212	38517	51313	51313					0.009622885492944988
TDLEISLDNTY	11	Unmodified	_TDLEISLDNTY_					0	0	0			REV__ENST00000530397.1_1_1:95293042-95354234:+|nuORF	REV__ENST00000530397.1_1_1:95293042-95354234:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	428.9386291503906	3	428.538236	1282.59288	-0.3148	-0.0001349	1.2958	0.00055531	0.98102	0.0004204	428.5386804959704	24.322	0.20243	24.322	24.245	24.447	0					5	3	2	0	0	0	0.94168	1	6923	6923		12.228	3.7833	1	3453100	+		52562	19333	38213	38518	51314	51314					-0.03711559218027105
TDLEVRPYD	9	Unmodified	_TDLEVRPYD_					0	0	0			REV__nc|ENSG00000160695|Q9H270|VPS11	REV__nc|ENSG00000160695|Q9H270|VPS11	MULTI-SECPEP	A375_MHC_IP_R1	1	554.6797485351562	2	554.269478	1106.5244	-0.69039	-0.00038266	-2.6563	-0.0014723	-3.3467	-0.001855	554.2695121888349	46.805	0.86041	46.805	46.195	47.055	0					50	16	5	0	0	0	0.50702	1	16211	16211		32.305	9.1571	1	11474000	+		52563	20180	38214	38519	51315	51315					-0.024597590072289677
TDLEVRPYD	9	Unmodified	_TDLEVRPYD_					0	0	0			REV__nc|ENSG00000160695|Q9H270|VPS11	REV__nc|ENSG00000160695|Q9H270|VPS11	MULTI-MSMS	A375_MHC_IP_R2	2	555.668212890625	2	554.269478	1106.5244	-0.7358	-0.00040783	-2.5246	-0.0013993	-3.2604	-0.0018071	554.2695133989727	45.986	1.0598	46.751	46.048	47.108	0.76519					49	20	4	0	0	0	0.32092	1	17044	17044		29.082	1.4528	1	9978500	+		52564	20180	38214	38519	51316	51316					-0.024597590072289677
TDLFKVAARI	10	Unmodified	_TDLFKVAARI_					0	0	0			REV__ENSG00000171953|ENST00000474627|ATPAF2	REV__ENSG00000171953|ENST00000474627|ATPAF2	MULTI-SECPEP	A375_MHC_IP_R2	2	567.15771484375	2	567.337498	1132.66044	-0.49956	-0.00028342	-1.0659	-0.00060471	-1.5654	-0.00088813	567.3375864003558	48.877	0.20473	49.634	49.536	49.741	0.75736					5	3	2	0	0	0	0.9269	1	18338	18338		6.7232	4.6634	1	663330	+		52565	21112	38215	38520	51317	51317					0.09941980294070163
TDLFRALEDP	10	Unmodified	_TDLFRALEDP_					0	0	0		ENST00000236671.6_2_11:1774213-1774510:-|nuORF	ENST00000236671.6_2_11:1774213-1774510:-|nuORF	ENST00000236671.6_2_11:1774213-1774510:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	588.1777954101562	2	588.798403	1175.58225	-0.39709	-0.00023381	0.58757	0.00034596	0.19048	0.00011215	588.7983517648731	24.63	0.2513	24.63	24.498	24.749	0					6	4	2	0	0	0	0.9269	1	7097	7097		0.35063	0.35063	1	1244100			52566	10159	38216	38521	51318	51318					0.0014850291820494022
TDLGEVKGYL	10	Unmodified	_TDLGEVKGYL_					0	0	0			REV__GPKOW|p.P266T|1|0.56|ENSG00000068394|chrX:49117147-49117147|G/T|missense_variant	REV__GPKOW|p.P266T|1|0.56|ENSG00000068394|chrX:49117147-49117147|G/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	365.6086120605469	3	365.529123	1093.56554	0.010987	4.016E-06	4.0468	0.0014792	4.0578	0.0014832	365.5306167999454	31.128	0.40723	31.846	31.618	32.026	0.71857					10	7	2	0	0	0	0.88918	1	10907	10907		7.9454	0	1	1507500	+		52567	26696	38217	38522	51319	51319					0.022500020322468117
TDLIAHWIY	9	Unmodified	_TDLIAHWIY_					0	0	0			REV__ENST00000582618.1_1_18:21948255-21957497:-|nuORF	REV__ENST00000582618.1_1_18:21948255-21957497:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	566.6693725585938	2	566.295299	1130.57605	-0.47084	-0.00026663	-1.9388	-0.0010979	-2.4096	-0.0013645	566.294643141987	67.025	0.6086	67.761	67.495	68.104	0.73631					13	11	2	0	0	0	0.74651	1	25324	25324		8.5933	0	1	1047500	+		52568	26358	38218	38523	51320	51320					0.015980294773271453
TDLIEEPY	8	Unmodified	_TDLIEEPY_					0	0	0			REV__ENSG00000143387|ENST00000271651|CTSK	REV__ENSG00000143387|ENST00000271651|CTSK	MULTI-SECPEP	A375_MHC_IP_R1	1	490.63494873046875	2	490.234573	978.454593	-0.23527	-0.00011534	1.4473	0.0007095	1.212	0.00059416	490.23507945678324	33.773	0.45389	33.773	33.445	33.898	0					13	8	2	0	0	0	0.86765	1	11073	11073		32.117	7.4431	1	3010600	+		52569	15665	38219	38524	51321	51321					-0.03549637675848771
TDLKRDLFNY	10	Unmodified	_TDLKRDLFNY_					0	0	0			REV__tr|U7SWV0|U7SWV0_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01181PE=4SV=1	REV__tr|U7SWV0|U7SWV0_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01181PE=4SV=1	MSMS	A375_MHC_IP_R1	1	428.9386291503906	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.407	1	24.407	23.907	24.907	0								0	0	0	0.15464	1	6923	6923		5.7834	1.0675	1		+		52570	28610	38220	38525	51322	51322					0.020521672179029338
TDLLAHWNEAY	11	Unmodified	_TDLLAHWNEAY_					0	0	0		nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1;nc|ENSG00000084112|Q8WYL5-4|SSH1;ENSG00000084112|ENST00000326495|SSH1	nc|ENSG00000084112|Q8WYL5-2|SSH1	nc|ENSG00000084112|Q8WYL5-2|SSH1	MULTI-MSMS	A375_MHC_IP_R1	1	445.2789001464844	3	444.878815	1331.61462	-0.11914	-5.3005E-05	0.29687	0.00013207	0.17772	7.9066E-05	444.87891384584844	38.548	1.0689	38.548	38.067	39.136	0					51	20	5	0	0	0	0.72585	1	13045	13045		12.856	0	1	60379000			52571	1795	38221	38526	51323	51323					-0.03792709678805295
TDLLAIENI	9	Unmodified	_TDLLAIENI_					0	0	0		tr|U7STL0|U7STL0_FUSNUSporephotoproductlyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01098PE=4SV=1	tr|U7STL0|U7STL0_FUSNUSporephotoproductlyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01098PE=4SV=1	tr|U7STL0|U7STL0_FUSNUSporephotoproductlyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01098PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	501.2051696777344	2	501.279315	1000.54408	-0.89646	-0.00044938	0.15041	7.5396E-05	-0.74605	-0.00037398	501.27924947244975	61.67	1.7679	62.415	61.919	63.687	0.74503					86	34	4	0	0	0	0.11436	1	23564	23564		49.933	18.665	1	10632000			52572	29705	38222	38527	51324	51324					0.04382617003534506
TDLLIVLSDV	10	Unmodified	_TDLLIVLSDV_					0	0	0		nc|ENSG00000059573|P54886-2|ALDH18A1;ENSG00000059573|ENST00000371224|ALDH18A1	nc|ENSG00000059573|P54886-2|ALDH18A1	nc|ENSG00000059573|P54886-2|ALDH18A1	MULTI-MSMS	A375_MHC_IP_R2	2	544.2129516601562	2	544.315897	1086.61724	-0.82522	-0.00044918	-1.8754	-0.0010208	-2.7006	-0.00147	544.3150832649193	130.36	0.25313	130.58	130.5	130.75	0.2142					6	4	2	0	0	0	0.33603	1	51274	51274		37.974	5.6685	1	22928000			52573	1302	38223	38528	51325	51325					0.07739745726121328
TDLNPKSSCS	10	Unmodified	_TDLNPKSSCS_					0	0	0			REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A	REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A	MSMS	A375_MHC_IP_R1	1	526.1766967773438	2	526.239864	1050.46517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.268	1	80.268	79.768	80.768	0								0	0	0	0.13403	1	29308	29308		32.786	11.039	1		+		52574	16790	38224	38529	51326	51326					-0.05803978293079126
TDLPVRHNED	10	Unmodified	_TDLPVRHNED_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	A375_MHC_IP_R1	1	398.9230041503906	3	399.194915	1194.56291	-0.45789	-0.00018279	0.58895	0.0002351	0.13106	5.2317E-05	399.19509960213395	41.723	0.51196	41.723	41.47	41.982	0					16	8	3	0	0	0	0.70179	1	14463	14463		7.0371	0.40671	1	2264500			52575	3064	38225	38530	51327	51327					-0.026584533727373127
TDLPVRHNED	10	Unmodified	_TDLPVRHNED_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	399.194915	1194.56291	-0.45789	-0.00018279	0.58895	0.0002351	0.13106	5.2317E-05	399.19509960213395	41.723	0.51196	41.723	41.47	41.982	0	0.045705	0.00051	NaN	7.0371	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2264500			52576	3064	38225	38530							-0.026584533727373127
TDLRTIGKKF	10	Unmodified	_TDLRTIGKKF_					0	0	0		ENSG00000083544|ENST00000377881|TDRD3	ENSG00000083544|ENST00000377881|TDRD3	ENSG00000083544|ENST00000377881|TDRD3	MULTI-MSMS	A375_MHC_IP_R1	1	393.96771240234375	3	393.567912	1177.68191	-0.069474	-2.7343E-05	-0.25335	-9.9711E-05	-0.32283	-0.00012705	393.56769343630236	25.612	0.55863	25.612	25.408	25.966	0					14	10	2	0	0	0	0.71455	1	7557	7557		5.7834	0	1	3133100			52577	1781	38226	38531	51328	51328					0.1001736532277846
TDLRVPHSYE	10	Unmodified	_TDLRVPHSYE_					0	0	0		ENSG00000112139|ENST00000434837|MDGA1;nc|ENSG00000112139|Q8NFP4-2|MDGA1	ENSG00000112139|ENST00000434837|MDGA1	ENSG00000112139|ENST00000434837|MDGA1	MULTI-SECPEP	A375_MHC_IP_R2	2	406.9432678222656	3	406.20341	1215.5884	-0.23957	-9.7314E-05	0.63984	0.00025991	0.40027	0.00016259	406.20429843894857	24.109	0.25555	24.752	24.55	24.806	0.64368					6	4	2	0	0	0	0.93566	1	7787	7787		6.6235	0	1	1408500			52578	3052	38227	38532	51329	51329					-0.010769788503012023
TDLTLLPGHLY	11	Unmodified	_TDLTLLPGHLY_					0	0	0		ENSG00000178078|ENST00000594605|STAP2;nc|ENSG00000178078|Q9UGK3-2|STAP2	ENSG00000178078|ENST00000594605|STAP2	ENSG00000178078|ENST00000594605|STAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	622.2409057617188	2	621.840071	1241.66559	-0.58185	-0.00036182	0.49321	0.0003067	-0.088645	-5.5123E-05	621.8405067300621	94.998	0.40783	94.998	94.853	95.261	0					12	7	2	0	0	0	0.72469	1	34933	34933		29.082	2.8134	1	2169100			52579	8130	38228	38533	51330	51330					0.05442239366061585
TDLTLLPGHLY	11	Unmodified	_TDLTLLPGHLY_					0	0	0		ENSG00000178078|ENST00000594605|STAP2;nc|ENSG00000178078|Q9UGK3-2|STAP2	ENSG00000178078|ENST00000594605|STAP2	ENSG00000178078|ENST00000594605|STAP2	MULTI-MATCH	A375_MHC_IP_R2	2		2	621.840071	1241.66559	-0.5547	-0.00034493	0.048342	3.0061E-05	-0.50636	-0.00031487	621.8406228175429	94.011	0.50515	94.755	94.515	95.02	0.74473	-0.1213	-0.00040924	NaN	29.082	16	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1497000			52580	8130	38228	38533							0.05442239366061585
TDLVLLVIY	9	Unmodified	_TDLVLLVIY_					0	0	0			REV__ENSG00000187010|ENST00000328664|RHD	REV__ENSG00000187010|ENST00000328664|RHD	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6580810546875	2	524.818076	1047.6216	-0.40213	-0.00021104	0.83338	0.00043737	0.43125	0.00022633	524.8186561892923	54.593	0.35652	54.593	54.364	54.72	0					8	6	2	0	0	0	0.74651	1	19418	19418		8.5933	0.68312	1	1184100	+		52581	22003	38229	38534	51331	51331					0.09969254939710481
TDLVPPQP	8	Unmodified	_TDLVPPQP_					0	0	0			REV__ENSG00000169136|ENST00000423777|ATF5	REV__ENSG00000169136|ENST00000423777|ATF5	MULTI-SECPEP	A375_MHC_IP_R1	1	434.14215087890625	2	433.734543	865.454533	-0.49802	-0.00021601	0.47281	0.00020507	-0.025218	-1.0938E-05	433.7347182201723	38.083	0.35547	38.083	37.964	38.319	0					10	6	2	0	0	0	0.972	1	12958	12958		12.532	0	1	744690	+		52582	20909	38230	38535	51332	51332					0.0164240711480943
TDLVPSVT	8	Unmodified	_TDLVPSVT_					0	0	0		nc|ENSG00000122507|Q3SYG4-2|BBS9;nc|ENSG00000122507|Q3SYG4-4|BBS9;nc|ENSG00000122507|Q3SYG4-7|BBS9;nc|ENSG00000122507|Q3SYG4-3|BBS9;ENSG00000122507|ENST00000242067|BBS9;nc|ENSG00000122507|Q3SYG4-6|BBS9	nc|ENSG00000122507|Q3SYG4-2|BBS9	nc|ENSG00000122507|Q3SYG4-2|BBS9	MSMS	A375_MHC_IP_R1	1	416.2186279296875	2	416.226551	830.438549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.696	1	41.696	41.196	42.196	0								0	0	0	0.16876	1	14412	14412		8.5933	0	1				52583	3786	38231	38536	51333	51333					0.01654700877918458
TDMCLSRQSM	10	Unmodified	_TDMCLSRQSM_					0	0	0			REV__ENST00000553986.1_1_14:60616802-60619887:-|nuORF	REV__ENST00000553986.1_1_14:60616802-60619887:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	586.6483764648438	2	586.248851	1170.48315	-0.25423	-0.00014904	0.39758	0.00023308	0.14335	8.4038E-05	586.2490064368664	43.815	0.76119	43.815	43.3	44.061	0					20	14	2	0	0	0	0.63639	1	15257	15257		18.146	2.8979	1	2321000	+		52584	17111	38232	38537	51334	51334					-0.09527302634228363
TDMCLSRQSM	10	Unmodified	_TDMCLSRQSM_					0	0	0			REV__ENST00000553986.1_1_14:60616802-60619887:-|nuORF	REV__ENST00000553986.1_1_14:60616802-60619887:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	586.6482543945312	2	586.248851	1170.48315	-0.51538	-0.00030214	-0.061847	-3.6258E-05	-0.57722	-0.0003384	586.2487481438408	45.762	0.70454	46.527	46.201	46.906	0.76519					20	13	2	0	0	0	0.6806	1	17093	17093		14.838	0.93222	1	4535000	+		52585	17111	38232	38537	51335	51335					-0.09527302634228363
TDMDSDDSL	9	Unmodified	_TDMDSDDSL_					0	0	0		ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000150893|Q5SZK8-2|FREM2	ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	MSMS	A375_MHC_IP_R1	1	499.7054748535156	2	499.684587	997.354621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.789	1	82.789	82.289	83.289	0								0	0	0	0.15486	1	30281	30281		12.532	0	1				52586	5867	38233	38538	51336	51336					-0.14416243071968893
TDMHGDSEY	9	Unmodified	_TDMHGDSEY_					0	0	0		ENSG00000179218|ENST00000316448|CALR;ENST00000590325.1_1_19:13049472-13051084:+|nuORF	ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	MULTI-MSMS	A375_MHC_IP_R2	2	528.093505859375	2	527.692746	1053.37094	-0.80271	-0.00042358	1.7816	0.00094016	0.97894	0.00051658	527.6940882487536	60.981	0.55606	61.726	61.464	62.02	0.74503					24	10	3	0	0	0	0.6898	1	23138	23138		7.9102	0.62092	1	4665700			52587	8214	38234	38539	51337	51337					-0.1536111711520789
TDMLSDSDNR	10	Unmodified	_TDMLSDSDNR_					0	0	0		ENST00000498524.5_1_3:15727727-15838055:-|nuORF;nc|ENSG00000206560|O15084-2|ANKRD28;nc|ENSG00000206560|O15084|ANKRD28;ENSG00000206560|ENST00000683139|ANKRD28;nc|ENSG00000206560|O15084-1|ANKRD28;ENST00000462657.1_1_3:15731457-15737643:-|nuORF	ENST00000498524.5_1_3:15727727-15838055:-|nuORF	ENST00000498524.5_1_3:15727727-15838055:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	577.6428833007812	2	577.243135	1152.47172	-0.46875	-0.00027058	1.1001	0.000635	0.6313	0.00036441	577.2432774194053	71.565	0.55661	72.299	71.959	72.516	0.73421					28	10	4	0	0	0	0.69833	1	27101	27101		13.042	1.4022	1	5147500			52588	9544	38235	38540	51338	51338					-0.09842085132345346
TDMNDQNLE	9	Unmodified	_TDMNDQNLE_					0	0	0		nc|ENSG00000086848|Q9H6U8-2|ALG9;nc|ENSG00000086848|Q9H6U8-4|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9;ENSG00000086848|ENST00000616540|ALG9	nc|ENSG00000086848|Q9H6U8-2|ALG9	nc|ENSG00000086848|Q9H6U8-2|ALG9	MSMS	A375_MHC_IP_R1	1	540.1631469726562	2	540.219128	1078.4237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.008	1	44.008	43.508	44.508	0								0	0	0	0.1535	1	15332	15332		15.847	1.9411	1				52589	1847	38236	38541	51339	51339					-0.11237159052416246
TDNAVAIIG	9	Unmodified	_TDNAVAIIG_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B;REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MULTI-MSMS	A375_MHC_IP_R2	2	437.27008056640625	2	437.23745	872.460347	-0.74296	-0.00032485	0.29276	0.00012801	-0.4502	-0.00019684	437.237520910963	25.662	1.2701	26.321	26.144	27.414	0.65992					53	24	3	0	0	0	0.64808	1	9055	9055		11.64	0.81637	1	71994000	+		52590	18241;20879	38237	38542	51340	51340					0.01901505626483413
TDNHLFLYY	9	Unmodified	_TDNHLFLYY_					0	0	0		ENST00000259989.6_1_4:15962053-15964077:-|nuORF;ENST00000509331.1_1_4:15962053-15970894:-|nuORF	ENST00000259989.6_1_4:15962053-15964077:-|nuORF	ENST00000259989.6_1_4:15962053-15964077:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	396.25714111328125	3	395.857351	1184.55022	-0.43697	-0.00017298	-0.84373	-0.000334	-1.2807	-0.00050697	395.8572925357841	19.796	0.5039	20.406	20.197	20.701	0.61029					14	9	2	0	0	0	0.63811	1	6146	6146		8.1555	0.54658	1	940730			52591	10263	38238	38543	51341	51341					-0.03466864764982347
TDNKLSLVW	9	Unmodified	_TDNKLSLVW_					0	0	0			REV__ENST00000472270.1_1_X:70756118-70756274:+|nuORF	REV__ENST00000472270.1_1_X:70756118-70756274:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	359.597412109375	3	359.197596	1074.57096	0.034693	1.2462E-05	0.47653	0.00017117	0.51122	0.00018363	359.197577694171	28.263	0.65643	28.263	27.987	28.643	0					20	12	2	0	0	0	0.75519	1	8706	8706		14.405	0	1	4580900	+		52592	25134	38239	38544	51342	51342					0.036657256147236694
TDNLAPPLY	9	Unmodified	_TDNLAPPLY_					0	0	0			REV__ENST00000268795.5_1_16:68025739-68025916:-|nuORF	REV__ENST00000268795.5_1_16:68025739-68025916:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	502.20233154296875	2	502.258382	1002.50221	-0.50278	-0.00025252	-0.13401	-6.7307E-05	-0.63678	-0.00031983	502.25789679488423	91.274	0.20232	91.274	91.199	91.401	0					5	3	2	0	0	0	0.46038	1	33540	33540		21.747	1.293	1	535660	+		52593	23267	38240	38545	51343	51343					0.0010606131500026095
TDNLVRVW	8	Unmodified	_TDNLVRVW_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000509148.1_1_5:180663979-180664048:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-SECPEP	A375_MHC_IP_R1	1	502.17138671875	2	501.771991	1001.52943	-0.19474	-9.7713E-05	-0.17731	-8.8968E-05	-0.37204	-0.00018668	501.77196482327565	72.253	0.45575	72.253	72.018	72.474	0					15	8	2	0	0	0	0.1978	1	26305	26305		85.642	37.296	1	2413600			52594	9470	38241	38546	51344	51344					0.02872589646040069
TDNLVRVW	8	Unmodified	_TDNLVRVW_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000509148.1_1_5:180663979-180664048:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-MSMS	A375_MHC_IP_R2	2	502.1714782714844	2	501.771991	1001.52943	-0.87063	-0.00043686	0.21832	0.00010955	-0.65231	-0.00032731	501.7721079342765	71.426	0.40553	72.16	71.908	72.314	0.73421					14	7	2	0	0	0	0.15187	1	27114	27114		85.642	37.296	1	2870700			52595	9470	38241	38546	51345	51345					0.02872589646040069
TDNPFYIKH	9	Unmodified	_TDNPFYIKH_					0	0	0			REV__nc|ENSG00000169994|Q6PIF6-2|MYO7B	REV__nc|ENSG00000169994|Q6PIF6-2|MYO7B	MULTI-SECPEP	A375_MHC_IP_R1	1	568.1143798828125	2	567.782556	1133.55056	0.13882	7.8822E-05	2.1267	0.0012075	2.2655	0.0012863	567.7831804684484	45.13	0.25452	45.13	44.928	45.183	0					8	4	3	0	0	0	0.58271	1	15743	15743		20.454	1.0146	1	732070	+		52596	20961	38242	38547	51346	51346					-0.010874450451183293
TDNVPNVIY	9	Unmodified	_TDNVPNVIY_					0	0	0			REV__ENSG00000099715|ENST00000698851|PCDH11Y	REV__ENSG00000099715|ENST00000698851|PCDH11Y	MULTI-MSMS	A375_MHC_IP_R2	2	518.2155151367188	2	517.761289	1033.50803	-0.61645	-0.00031917	0.9798	0.0005073	0.36335	0.00018813	517.7618560804917	46.353	0.56036	47.118	46.906	47.466	0.76519					16	10	2	0	0	0	0.60101	1	17294	17294		14.838	3.198	1	1815800	+		52597	17021	38243	38548	51347	51347					-0.007388401733123828
TDPAEPRY	8	Unmodified	_TDPAEPRY_					0	0	0			REV__ENSG00000162729|ENST00000314485|IGSF8	REV__ENSG00000162729|ENST00000314485|IGSF8	MULTI-MSMS	A375_MHC_IP_R2	2	475.12396240234375	2	474.724707	947.43486	-0.90475	-0.00042951	0.24607	0.00011681	-0.65869	-0.0003127	474.72464211585924	34.127	0.61061	34.879	34.651	35.262	0.75225					23	11	3	0	0	0	0.28202	1	12284	12284		60.39	9.5345	1	21425000	+		52598	20298	38244	38549	51348	51348					-0.04095968895956048
TDPCPRLWM	9	Unmodified	_TDPCPRLWM_					0	0	0		ENST00000523767.5_1_5:149877380-149900454:+|nuORF	ENST00000523767.5_1_5:149877380-149900454:+|nuORF	ENST00000523767.5_1_5:149877380-149900454:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	560.159912109375	2	559.759712	1117.50487	-0.30844	-0.00017265	0.22956	0.0001285	-0.078883	-4.4156E-05	559.7599418734644	93.104	0.5602	93.104	92.769	93.329	0					16	10	2	0	0	0	0.73363	1	34216	34216		15.847	12.566	1	2079400			52599	13052	38245	38550	51349	51349					-0.04918129823340678
TDPIQGTEY	9	Unmodified	_TDPIQGTEY_					0	0	0		nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	MULTI-SECPEP	A375_MHC_IP_R1	1	512.6348266601562	2	512.235104	1022.45566	-0.53545	-0.00027427	0.20275	0.00010386	-0.3327	-0.00017042	512.2349573284129	40.161	0.50974	40.161	39.896	40.406	0					15	9	3	0	0	0	0.5212	1	13802	13802		20.415	3.3016	1	2333400			52600	7685	38246	38551	51350	51350					-0.05467423306959063
TDPLKFYATSY	11	Unmodified	_TDPLKFYATSY_					0	0	0		nc|ENSG00000162148|Q7Z5V6-2|SAXO4;ENSG00000162148|ENST00000338608|PPP1R32	nc|ENSG00000162148|Q7Z5V6-2|SAXO4	nc|ENSG00000162148|Q7Z5V6-2|SAXO4	MULTI-SECPEP	A375_MHC_IP_R2	2	436.6180114746094	3	435.883566	1304.62887	-0.1744	-7.6017E-05	0.12396	5.4033E-05	-0.050436	-2.1984E-05	435.8835277096873	68.879	0.60894	69.614	69.323	69.932	0.73511					30	11	4	0	0	0	0.9907	1	26086	26086		9.2438	0	1	5288000			52601	6510	38247	38552	51351	51351					-0.011260572505079836
TDPLPTAH	8	Unmodified	_TDPLPTAH_					0	0	0			REV__nc|ENSG00000145113|Q99102-9|MUC4	REV__nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	A375_MHC_IP_R2	2	426.6161804199219	2	426.216517	850.418482	-0.37212	-0.0001586	-0.075205	-3.2053E-05	-0.44732	-0.00019066	426.21642622023893	34.634	0.60815	35.398	35.119	35.727	0.76338					24	11	3	0	0	0	0.7338	2	12503	12503;12572		24.674	5.2349	1	6223500	+		52602	19461	38248	38553	51352;51353	51352					-0.012710500620528364
TDPPEASLN	9	Unmodified	_TDPPEASLN_					0	0	0		ENST00000581396.5_1_17:17748968-17749280:-|nuORF	ENST00000581396.5_1_17:17748968-17749280:-|nuORF	ENST00000581396.5_1_17:17748968-17749280:-|nuORF	MSMS	A375_MHC_IP_R1	1	472.1658630371094	2	472.221997	942.429441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.241	1	27.241	26.741	27.741	0								0	0	0	0.15486	1	8232	8232		11.64	0	1				52603	13682	38249	38554	51354	51354					-0.044076924784235416
TDPPPPGFSF	10	Unmodified	_TDPPPPGFSF_					0	0	0		ENST00000525451.6_2_11:65622593-65622791:-|nuORF	ENST00000525451.6_2_11:65622593-65622791:-|nuORF	ENST00000525451.6_2_11:65622593-65622791:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	531.6492309570312	2	531.250557	1060.48656	-0.47684	-0.00025332	-1.3937	-0.00074041	-1.8706	-0.00099373	531.2495603791571	72.585	0.70972	72.585	72.22	72.93	0					36	13	4	0	0	0	0.74754	1	26409	26409		29.082	3.6823	1	3210200			52604	13070	38250	38555	51355	51355					-0.04126225202048772
TDPPPPGFSF	10	Unmodified	_TDPPPPGFSF_					0	0	0		ENST00000525451.6_2_11:65622593-65622791:-|nuORF	ENST00000525451.6_2_11:65622593-65622791:-|nuORF	ENST00000525451.6_2_11:65622593-65622791:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	531.649169921875	2	531.250557	1060.48656	-0.94183	-0.00050035	-0.97724	-0.00051916	-1.9191	-0.0010195	531.2494094122736	71.72	0.80946	72.454	72.162	72.971	0.73421					34	15	3	0	0	0	0.57505	1	27233	27233		22.736	1.1993	1	2492900			52605	13070	38250	38555	51356	51356					-0.04126225202048772
TDPQLFFFFF	10	Unmodified	_TDPQLFFFFF_					0	0	0			REV__ENST00000272462.2_1_2:110841508-110841715:-|nuORF	REV__ENST00000272462.2_1_2:110841508-110841715:-|nuORF	MSMS	A375_MHC_IP_R2	2	436.9452819824219	3	436.881497	1307.62266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.187	1	29.886	29.386	30.386	0.69872								0	0	0	0.15152	1	10172	10172		14.957	1.4222	1		+		52606	23279	38251	38556	51357	51357					-0.018845306913817694
TDPQLLLY	8	Unmodified	_TDPQLLLY_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R1	1	482.1629638671875	2	481.7633	961.512048	-0.12027	-5.7943E-05	-0.021009	-1.0122E-05	-0.14128	-6.8065E-05	481.7632214657365	107.69	1.2216	107.69	107.19	108.41	0					65	23	4	0	0	0	0.42086	1	39656	39656		52.268	3.9225	1	10392000			52607	7807	38252	38557	51358	51358					0.029752493203886843
TDPQLLLY	8	Unmodified	_TDPQLLLY_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R2	2	482.1630859375	2	481.7633	961.512048	-0.6462	-0.00031132	-0.059215	-2.8528E-05	-0.70542	-0.00033985	481.76319583517505	106.96	1.3721	107.72	107.14	108.51	0.75977					68	26	4	0	0	0	0.1699	2	40318	40318;40529		71.134	13.662	1	13779000			52608	7807	38252	38557	51359;51360	51359					0.029752493203886843
TDPQMWNFDD	10	Unmodified	_TDPQMWNFDD_					0	0	0		CXCR1|p.D11N|1|0.37|ENSG00000163464|chr2:218165181-218165181|C/T|missense_variant	CXCR1|p.D11N|1|0.37|ENSG00000163464|chr2:218165181-218165181|C/T|missense_variant	CXCR1|p.D11N|1|0.37|ENSG00000163464|chr2:218165181-218165181|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	634.6439819335938	2	634.748053	1267.48155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.538	1	56.289	55.789	56.789	0.75075								0	0	0	0.15372	1	20981	20981		8.7454	1.1365	1				52609	689	38253	38558	51361	51361					-0.14148897126983684
TDPRKRFRRLE	11	Unmodified	_TDPRKRFRRLE_					0	0	0			REV__ENSG00000178921|ENST00000314666|PFAS	REV__ENSG00000178921|ENST00000314666|PFAS	MSMS	A375_MHC_IP_R2	2	737.4213256835938	2	737.423491	1472.83243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.932	1	80.676	80.176	81.176	0.74474								0	0	0	0.16302	1	30343	30343		2.9952	0.49676	1		+		52610	21526	38254	38559	51362	51362					0.1149252503430489
TDPRPAKA	8	Unmodified	_TDPRPAKA_					0	0	0		ENSG00000101306|ENST00000375985|MYLK2	ENSG00000101306|ENST00000375985|MYLK2	ENSG00000101306|ENST00000375985|MYLK2	MULTI-MSMS	A375_MHC_IP_R1	1	428.2909240722656	2	428.237784	854.461016	-0.19704	-8.4381E-05	0.035673	1.5277E-05	-0.16137	-6.9104E-05	428.23805735195214	25.435	1.2685	25.435	25.104	26.373	0					32	24	3	0	0	0	0.77603	1	7801	7801		9.3474	0	1	2532700			52611	2278	38255	38560	51363	51363					0.027963450661786737
TDPRRRVYRST	11	Unmodified	_TDPRRRVYRST_					0	0	0			REV__ENST00000590574.5_2_19:11072039-11072372:+|nuORF	REV__ENST00000590574.5_2_19:11072039-11072372:+|nuORF	MSMS	A375_MHC_IP_R1	1	469.4906921386719	3	469.591891	1405.75384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.794	1	75.794	75.294	76.294	0								0	0	0	0.16309	1	27617	27617		2.6312	0	1		+		52612	26435	38256	38561	51364	51364					0.06719672729218473
TDPSGDEPIFH	11	Unmodified	_TDPSGDEPIFH_					0	0	0		SON-ITSN1|1|fusion;SON-ITSN1|3|fusion;ENSG00000205726|ENST00000381318|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-4|ITSN1	SON-ITSN1|1|fusion	SON-ITSN1|1|fusion	MULTI-SECPEP	A375_MHC_IP_R1	1	608.1695556640625	2	607.769842	1213.52513	-0.072034	-4.378E-05	-0.53959	-0.00032795	-0.61162	-0.00037173	607.7694126164624	108.78	0.55551	108.78	108.56	109.12	0					15	10	2	0	0	0	0.9754	1	39918	39918		17.113	7.039	1	1985100			52613	29217	38257	38562	51365	51365					-0.07308964358185221
TDPSGDEPIFH	11	Unmodified	_TDPSGDEPIFH_					0	0	0		SON-ITSN1|1|fusion;SON-ITSN1|3|fusion;ENSG00000205726|ENST00000381318|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-4|ITSN1	SON-ITSN1|1|fusion	SON-ITSN1|1|fusion	MULTI-SECPEP	A375_MHC_IP_R2	2	608.1693725585938	2	607.769842	1213.52513	-0.42546	-0.00025858	-0.53427	-0.00032471	-0.95973	-0.00058329	607.7698011007404	108.03	0.51242	108.79	108.56	109.07	0.75436					19	9	3	0	0	0	0.98748	1	40827	40827		13.042	3.6593	1	2234100			52614	29217	38257	38562	51366	51366					-0.07308964358185221
TDPSVLGKY	9	Unmodified	_TDPSVLGKY_					0	0	0		ENSG00000114315|ENST00000232424|HES1;HES1|p.Q149Pfs*66|1|0.44|ENSG00000114315|chr3:194137832-194137833|-/C|frameshift_variant	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	A375_MHC_IP_R1	1	491.16131591796875	2	490.258382	978.502212	-0.27113	-0.00013293	0.64707	0.00031723	0.37593	0.0001843	490.25821849695603	46.212	0.85861	46.212	45.789	46.647	0					43	16	4	0	0	0	0.34064	2	16144	16144;16169		27.629	10.687	1	6184100			52615	3209	38258	38563	51367;51368	51367					0.012100613149982564
TDPSVLGKY	9	Unmodified	_TDPSVLGKY_					0	0	0		ENSG00000114315|ENST00000232424|HES1;HES1|p.Q149Pfs*66|1|0.44|ENSG00000114315|chr3:194137832-194137833|-/C|frameshift_variant	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	A375_MHC_IP_R2	2	490.6580505371094	2	490.258382	978.502212	-0.58587	-0.00028723	0.64225	0.00031487	0.056381	2.7641E-05	490.2583978667637	45.501	1.0101	46.266	45.694	46.704	0.76518					44	19	3	0	0	0	0.066859	1	16976	16976		57.722	28.64	1	6558100			52616	3209	38258	38563	51369	51369					0.012100613149982564
TDPTGRHIKF	10	Unmodified	_TDPTGRHIKF_					0	0	0			REV__ENSG00000115568|ENST00000411696|ZNF142	REV__ENSG00000115568|ENST00000411696|ZNF142	MULTI-SECPEP	A375_MHC_IP_R2	2	390.9464416503906	3	391.212128	1170.61456	-0.50715	-0.0001984	1.9905	0.00077871	1.4834	0.00058031	391.2135329205947	23.119	1.6293	23.749	22.959	24.588	0.63014					59	31	5	0	0	0	0.8528	1	7180	7180		10.315	0	1	15041000	+		52617	17894	38259	38564	51370	51370					0.03607335111860266
TDPTRPCDTI	10	Unmodified	_TDPTRPCDTI_					0	0	0			REV__nc|ENSG00000065243|Q16513-2|PKN2	REV__nc|ENSG00000065243|Q16513-2|PKN2	MULTI-SECPEP	A375_MHC_IP_R2	2	560.1592407226562	2	559.760963	1117.50737	-0.58825	-0.00032928	-1.1971	-0.00067011	-1.7854	-0.00099939	559.7598076609163	92.55	0.76036	93.289	92.836	93.596	0.73902					24	14	2	0	0	0	0.8528	1	35214	35214		11.495	5.7629	1	1461200	+		52618	16490	38260	38565	51371	51371					-0.04668002884704947
TDPTVRAYKF	10	Unmodified	_TDPTVRAYKF_					0	0	0			REV__nc|ENSG00000131473|P53396-3|ACLY	REV__nc|ENSG00000131473|P53396-3|ACLY	MULTI-SECPEP	A375_MHC_IP_R1	1	399.30487060546875	3	399.880267	1196.61897	-0.34251	-0.00013696	-1.273	-0.00050906	-1.6155	-0.00064602	399.8798740780876	19.597	0.30509	19.597	19.471	19.776	0					9	5	2	0	0	0	0.93733	1	4857	4857		3.0723	0	1	1394400	+		52619	27226	38261	38566	51372	51372					0.02852799534730366
TDPVDYYPL	9	Unmodified	_TDPVDYYPL_					0	0	0		ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	MULTI-SECPEP	A375_MHC_IP_R2	2	542.1715087890625	2	541.755672	1081.49679	-1.0651	-0.00057702	-3.9898	-0.0021615	-5.055	-0.0027385	541.7525111348208	38.007	0.15588	38.781	38.687	38.843	0.77451					4	2	2	0	0	0	0.43707	1	13973	13973		28.487	11.545	1	674940			52620	8821	38262	38567	51373	51373					-0.040696622674886385
TDPVHDLM	8	Unmodified	_TDPVHDLM_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF;nc|ENSG00000038427|P13611-2|VCAN	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-SECPEP	A375_MHC_IP_R1	1	464.997802734375	2	464.21566	926.416767	-0.076499	-3.5512E-05	-0.38422	-0.00017836	-0.46072	-0.00021387	464.21546957469934	37.294	0.51051	37.294	37.096	37.607	0					11	9	2	0	0	0	0.972	1	12538	12538		8.5933	0	1	1342200			52621	1154	38263	38568	51374	51374					-0.049384271423150494
TDPVHDLM	8	Unmodified	_TDPVHDLM_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF;nc|ENSG00000038427|P13611-2|VCAN	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-MATCH	A375_MHC_IP_R2	2		2	464.21566	926.416767	-0.91726	-0.00042581	0.368	0.00017083	-0.54925	-0.00025497	464.2156438066088	36.479	0.25288	37.25	37.157	37.41	0.7709	-0.021859	0.00062751	NaN	8.5933	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1769400			52622	1154	38263	38568							-0.049384271423150494
TDPVMALVIVY	11	Unmodified	_TDPVMALVIVY_					0	0	0			REV__ENST00000480032.4_1_2:166152333-166226884:+|nuORF	REV__ENST00000480032.4_1_2:166152333-166226884:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	407.5964050292969	3	407.558025	1219.65225	-0.37263	-0.00015187	4.142	0.0016881	3.7694	0.0015363	407.8939439359926	24.273	0.45565	24.273	24.092	24.547	0					12	8	2	0	0	0	0.73283	1	6939	6939		5.0475	0	1	8022600	+		52623	25241	38264	38569	51375	51375					0.05120665262438706
TDQKPKVKD	9	Unmodified	_TDQKPKVKD_					0	0	0			REV__ENSG00000131013|ENST00000253329|PPIL4	REV__ENSG00000131013|ENST00000253329|PPIL4	MULTI-SECPEP	A375_MHC_IP_R1	1	529.1713256835938	2	529.795663	1057.57677	-0.46408	-0.00024587	-0.18979	-0.00010055	-0.65387	-0.00034642	529.7960027903844	62.94	0.76986	62.94	62.351	63.121	0					19	14	2	0	0	0	0.74412	1	22568	22568		6.2058	2.2614	1	882580	+		52624	18580	38265	38570	51376	51376					0.05028824126384279
TDQKTYDNKF	10	Unmodified	_TDQKTYDNKF_					0	0	0			REV__ENST00000506851.5_1_4:146017219-146019304:-|nuORF	REV__ENST00000506851.5_1_4:146017219-146019304:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	421.269287109375	3	420.534937	1258.58298	0.0132	5.5512E-06	-0.22352	-9.3997E-05	-0.21032	-8.8445E-05	420.5347814504119	43.13	0.55743	43.903	43.674	44.231	0.7724					17	10	3	0	0	0	0.70651	1	16078	16078		5.4027	0	1	1979300	+		52625	25561	38266	38571	51377	51377					-0.03596702432787424
TDQPAPSNVP	10	Unmodified	_TDQPAPSNVP_					0	0	0			REV__ENSG00000171195|ENST00000304887|MUC7	REV__ENSG00000171195|ENST00000304887|MUC7	MULTI-SECPEP	A375_MHC_IP_R2	2	513.1689453125	2	513.248546	1024.48254	-1.0831	-0.00055588	0.17436	8.949E-05	-0.90869	-0.00046639	513.2486941156443	33.434	0.40678	34.186	33.891	34.298	0.75225					12	7	2	0	0	0	0.6774	1	11982	11982		16.149	0	1	1606100	+		52626	21051	38267	38572	51378	51378					-0.028723146957418066
TDQSHHHGY	9	Unmodified	_TDQSHHHGY_					0	0	0			REV__nc|ENSG00000153094|O43521-17|BCL2L11	REV__nc|ENSG00000153094|O43521-17|BCL2L11	MULTI-MSMS	A375_MHC_IP_R1	1	541.1823120117188	2	541.225936	1080.43732	-0.67671	-0.00036625	-0.46152	-0.00024979	-1.1382	-0.00061604	541.2260224809073	83.659	0.86568	83.659	83.175	84.041	0					55	16	5	0	0	0	0.41409	1	30516	30516		24.021	3.5669	1	13465000	+		52627	27295	38268	38573	51379	51379					-0.09968120438270489
TDQSHHHGY	9	Unmodified	_TDQSHHHGY_					0	0	0			REV__nc|ENSG00000153094|O43521-17|BCL2L11	REV__nc|ENSG00000153094|O43521-17|BCL2L11	MULTI-MATCH	A375_MHC_IP_R2	2		2	541.225936	1080.43732	-0.82749	-0.00044786	-0.32691	-0.00017693	-1.1544	-0.00062479	541.2260075343843	82.986	0.96179	83.726	83.344	84.305	0.73962	0.033203	5.063E-05	NaN	24.021	55	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11658000	+		52628	27295	38268	38573							-0.09968120438270489
TDQYTQQL	8	Unmodified	_TDQYTQQL_					0	0	0			REV__ENSG00000078295|ENST00000338316|ADCY2	REV__ENSG00000078295|ENST00000338316|ADCY2	MULTI-MSMS	A375_MHC_IP_R1	1	498.72149658203125	2	498.735271	995.45599	-0.47662	-0.00023771	0.37213	0.00018559	-0.10449	-5.2115E-05	498.7353023393164	39.504	0.40555	39.504	39.289	39.694	0					12	7	2	0	0	0	0.71451	1	13450	13450		30.225	12.09	1	1497400	+		52629	16710	38269	38574	51380	51380					-0.04192003587081672
TDRATRRVM	9	Unmodified	_TDRATRRVM_					0	0	0		ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	A375_MHC_IP_R1	1	369.5844421386719	3	369.201346	1104.58221	0.39967	0.00014756	2.0097	0.00074198	2.4094	0.00088954	369.2022102111662	20.411	0.5099	20.411	20.232	20.742	0					15	9	2	0	0	0	0.74412	1	5176	5176		3.8763	0	1	808620			52630	1739	38270	38575	51381	51381					0.034102244371979396
TDREKMEKRT	10	Unmodified	_TDREKMEKRT_					0	0	0		ENSG00000115112|ENST00000263707|TFCP2L1;nc|ENSG00000135457|Q12800-2|TFCP2;nc|ENSG00000135457|Q12800-3|TFCP2;nc|ENSG00000135457|Q12800-4|TFCP2;ENSG00000135457|ENST00000257915|TFCP2;nc|ENSG00000153560|Q9NZI7-4|UBP1;ENSG00000153560|ENST00000283629|UBP1	ENSG00000115112|ENST00000263707|TFCP2L1;nc|ENSG00000135457|Q12800-2|TFCP2;nc|ENSG00000153560|Q9NZI7-4|UBP1	nc|ENSG00000153560|Q9NZI7-4|UBP1	MSMS	A375_MHC_IP_R1	1	431.91357421875	3	431.890838	1292.65068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.739	1	61.739	61.239	62.239	0								0	0	0	0.15486	1	22273	22273		5.0475	1.4548	1				52631	6036;4688;3271	38271	38576	51382	51382					0.016064242263837514
TDRFVRTKAK	10	Unmodified	_TDRFVRTKAK_					0	0	0			REV__nc|ENSG00000159842|Q12979-4|ABR	REV__nc|ENSG00000159842|Q12979-4|ABR	MULTI-MSMS	A375_MHC_IP_R1	1	408.30645751953125	3	407.906928	1220.69895	-0.4796	-0.00019563	-0.83795	-0.0003418	-1.3175	-0.00053744	407.90658933194345	136.61	0.40881	136.61	136.46	136.87	0					15	7	3	0	0	0	0.7245	1	52629	52629		0.56317	0.40385	1	1894900	+		52632	20137	38272	38577	51383	51383					0.09743285928584555
TDRFVRTKAK	10	Unmodified	_TDRFVRTKAK_					0	0	0			REV__nc|ENSG00000159842|Q12979-4|ABR	REV__nc|ENSG00000159842|Q12979-4|ABR	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	407.906928	1220.69895	-0.4796	-0.00019563	-0.83795	-0.0003418	-1.3175	-0.00053744	407.90658933194345	136.61	0.40881	136.61	136.46	136.87	0	-0.033786	0.00030036	NaN	0.56317	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1894900	+		52633	20137	38272	38577							0.09743285928584555
TDRICRFKW	9	Unmodified	_TDRICRFKW_					0	0	0		ENSG00000144647|ENST00000344697|POMGNT2	ENSG00000144647|ENST00000344697|POMGNT2	ENSG00000144647|ENST00000344697|POMGNT2	MULTI-MSMS	A375_MHC_IP_R2	2	408.642822265625	3	408.881725	1223.62335	-0.33392	-0.00013654	-4.119	-0.0016842	-4.453	-0.0018207	409.21499587854555	24.584	0.50655	25.227	25.009	25.516	0.64368					16	9	3	0	0	0	0.69674	1	8127	8127		4.5289	0	1	2536800			52634	5501	38273	38578	51384	51384					0.020479854766790595
TDRIPWVAP	9	Unmodified	_TDRIPWVAP_					0	0	0		nc|ENSG00000105639|P52333-2|JAK3;ENSG00000105639|ENST00000458235|JAK3	nc|ENSG00000105639|P52333-2|JAK3	nc|ENSG00000105639|P52333-2|JAK3	MULTI-SECPEP	A375_MHC_IP_R2	2	1055.30810546875	1	1054.56801	1053.56073	0.25071	0.00026439	-3.5431	-0.0037364	-3.2924	-0.003472	1054.5635661736183	141.41	0.25754	141.45	141.32	141.58	0.04216					6	4	2	0	0	0	0.8028	1	55326	55326		4.3292	0.38484	1	686290			52635	2618	38274	38579	51385	51385					0.03609162680118061
TDRMKFNI	8	Unmodified	_TDRMKFNI_					0	0	0		tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	MSMS	A375_MHC_IP_R1	1	512.6470947265625	2	512.765852	1023.51715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.493	1	76.493	75.993	76.993	0								0	0	0	0.16876	1	27884	27884		14.582	1.0738	1				52636	29702	38275	38580	51386	51386					0.006332299113523732
TDRPDESSF	9	Unmodified	_TDRPDESSF_					0	0	0			REV__nc|ENSG00000042062|Q96MK2-2|RIPOR3	REV__nc|ENSG00000042062|Q96MK2-2|RIPOR3	MULTI-MSMS	A375_MHC_IP_R2	2	527.6631469726562	2	527.22781	1052.44107	-0.77289	-0.00040749	-2.0831	-0.0010982	-2.856	-0.0015057	527.2269722350621	60.373	0.35791	61.118	61.006	61.364	0.74503					9	6	2	0	0	0	0.64808	1	22887	22887		11.64	1.4569	1	836420	+		52637	16346	38276	38581	51387	51387					-0.08305495455101664
TDRRIPAA	8	Unmodified	_TDRRIPAA_					0	0	0		PCDH18|p.G909R|2|0.25|ENSG00000189184|chr4:137528493-137528493|C/T|missense_variant	PCDH18|p.G909R|2|0.25|ENSG00000189184|chr4:137528493-137528493|C/T|missense_variant	PCDH18|p.G909R|2|0.25|ENSG00000189184|chr4:137528493-137528493|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	450.656494140625	2	450.256508	898.498464	0.05282	2.3783E-05	-0.0045685	-2.057E-06	0.048252	2.1726E-05	450.2564544766975	109.39	2.6946	109.39	108.26	110.95	0					133	52	3	0	0	0	0.77752	1	40470	40470		3.9444	3.9444	1	13356000			52638	15117	38277	38582	51388	51388					0.045154363318033575
TDRRTGRPF	9	Unmodified	_TDRRTGRPF_					0	0	0		ENSG00000232434|ENST00000436881|AJM1	ENSG00000232434|ENST00000436881|AJM1	ENSG00000232434|ENST00000436881|AJM1	MULTI-MSMS	A375_MHC_IP_R1	1	369.2611083984375	3	369.200223	1104.57884	0.54087	0.00019969	4.1484	0.0015316	4.6893	0.0017313	369.2016256421557	22.762	0.55259	22.762	22.623	23.176	0					16	10	2	0	0	0	0.64808	1	6208	6208		7.609	0.50723	1	2188800			52639	9730	38278	38583	51389	51389					0.030732976548506485
TDRRTGRPF	9	Unmodified	_TDRRTGRPF_					0	0	0		ENSG00000232434|ENST00000436881|AJM1	ENSG00000232434|ENST00000436881|AJM1	ENSG00000232434|ENST00000436881|AJM1	MULTI-MATCH	A375_MHC_IP_R2	2		3	369.200223	1104.57884	-0.078921	-2.9138E-05	5.7573	0.0021256	5.6784	0.0020965	369.2023327115857	22.498	0.5631	23.126	22.854	23.417	0.62804	0.18235	0.00011654	NaN	7.609	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	958020			52640	9730	38278	38583							0.030732976548506485
TDRSKIPIKF	10	Unmodified	_TDRSKIPIKF_					0	0	0			REV__ENSG00000116668|ENST00000367500|SWT1	REV__ENSG00000116668|ENST00000367500|SWT1	MULTI-MSMS	A375_MHC_IP_R2	2	402.27508544921875	3	402.239796	1203.69756	-0.29145	-0.00011723	-0.43458	-0.00017481	-0.72603	-0.00029204	402.2396376163089	19.279	0.80917	19.882	19.683	20.492	0.60308					21	15	2	0	0	0	0.72006	1	6095	6095		3.3196	0.24738	1	884000	+		52641	17962	38279	38584	51390	51390					0.10385651839851562
TDRSVRRL	8	Unmodified	_TDRSVRRL_					0	0	0		tr|U7STF6|U7STF6_FUSNUIntegrase/recombinaseXerDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01467PE=4SV=1	tr|U7STF6|U7STF6_FUSNUIntegrase/recombinaseXerDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01467PE=4SV=1	tr|U7STF6|U7STF6_FUSNUIntegrase/recombinaseXerDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01467PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	502.45379638671875	2	501.793789	1001.57303	-0.56725	-0.00028464	2.2811	0.0011446	1.7139	0.00086	501.7948841487593	27.861	0.20217	27.861	27.735	27.937	0					5	3	2	0	0	0	0.972	1	8498	8498		7.2892	0.56607	1	1040700			52642	29687	38280	38585	51391	51391					0.07230199143191385
TDRTDGRLQY	10	Unmodified	_TDRTDGRLQY_					0	0	0			REV__nc|ENSG00000137713|P30154-3|PPP2R1B	REV__nc|ENSG00000137713|P30154-3|PPP2R1B	MULTI-MSMS	A375_MHC_IP_R2	2	612.72412109375	2	612.802008	1223.58946	-0.84511	-0.00051788	1.4542	0.00089112	0.60907	0.00037324	612.8033192483256	38.187	0.66527	38.962	38.585	39.25	0.77451					23	12	2	0	0	0	0.70312	1	14162	14162		17.113	0	1	5080200	+		52643	27249	38281	38586	51392	51392					-0.013387644813519728
TDRTVIVCGPA	11	Unmodified	_TDRTVIVCGPA_					0	0	0		ENST00000402198.5_1_3:9518747-9519122:+|nuORF	ENST00000402198.5_1_3:9518747-9519122:+|nuORF	ENST00000402198.5_1_3:9518747-9519122:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	378.58416748046875	3	377.865741	1130.57539	0.18166	6.8644E-05	-0.17563	-6.6363E-05	0.0060347	2.2803E-06	377.8645934669787	27.588	1.2169	28.266	27.843	29.06	0.67857					115	23	8	0	0	0	0.72713	1	9788	9788		11.631	0.13666	1	268510000			52644	11564	38282	38587	51393	51393					0.015328667660014617
TDRVLWRRRKW	11	Unmodified	_TDRVLWRRRKW_					0	0	0		nc|ENSG00000159082|O43426-4|SYNJ1;ENSG00000159082|ENST00000674351|SYNJ1;nc|ENSG00000159082|O43426|SYNJ1	nc|ENSG00000159082|O43426-4|SYNJ1	nc|ENSG00000159082|O43426-4|SYNJ1	MULTI-SECPEP	A375_MHC_IP_R1	1	525.1927490234375	3	524.639176	1570.8957	-0.072666	-3.8124E-05	0.15329	8.0421E-05	0.080622	4.2298E-05	524.639415283003	38.992	0.30441	38.992	38.78	39.085	0					11	5	3	0	0	0	1.0012	1	13242	13242		0.064406	0	1	2048000			52645	6347	38283	38588	51394	51394					0.13308510542196927
TDRWMDLWWYF	11	Unmodified	_TDRWMDLWWYF_					0	0	0			REV__ENSG00000257008|ENST00000582579|GPR142	REV__ENSG00000257008|ENST00000582579|GPR142	MULTI-SECPEP	A375_MHC_IP_R2	2	539.5477294921875	3	540.2431	1617.70747	-0.82626	-0.00044638	-2.5271	-0.0013652	-3.3533	-0.0018116	540.5760063111103	83.223	0.25166	83.963	83.797	84.049	0.73962					5	4	2	0	0	0	1.0011	1	31651	31651		0.45452	0.35968	1	746320	+		52646	22887	38284	38589	51395	51395					-0.07667528217075414
TDSAMEPTGP	10	Unmodified	_TDSAMEPTGP_					0	0	0		nc|ENSG00000204590|P36915-2|GNL1;ENSG00000204590|ENST00000376621|GNL1	nc|ENSG00000204590|P36915-2|GNL1	nc|ENSG00000204590|P36915-2|GNL1	MSMS	A375_MHC_IP_R1	1	503.1844482421875	2	503.213314	1004.41208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.331	1	24.331	23.831	24.831	0								0	0	0	0.15158	1	6884	6884		14.838	4.7643	1				52647	9461	38285	38590	51396	51396					-0.08995356075718064
TDSEKIGTLE	10	Unmodified	_TDSEKIGTLE_					0	0	0			REV__ENSG00000161057|ENST00000292644|PSMC2	REV__ENSG00000161057|ENST00000292644|PSMC2	MSMS	A375_MHC_IP_R2	2	546.6713256835938	2	546.774593	1091.53463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.292	1	26.952	26.452	27.452	0.65992								0	0	0	0.14483	1	8872	8872		27.629	13.723	1		+		52648	20200	38286	38591	51397	51397					-0.007471960726206817
TDSHDDNQPS	10	Unmodified	_TDSHDDNQPS_					0	0	0			REV__nc|ENSG00000227345|Q86W56-3|PARG	REV__nc|ENSG00000227345|Q86W56-3|PARG	MSMS	A375_MHC_IP_R1	1	558.178955078125	2	558.215431	1114.41631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.211	1	75.211	74.711	75.711	0								0	0	0	0.15353	1	27401	27401		9.3831	1.473	1		+		52649	22729	38287	38592	51398	51398					-0.13632175328484664
TDSHVTNSTLL	11	Unmodified	_TDSHVTNSTLL_					0	0	0			REV__ENST00000482023.5_1_1:249144411-249145095:-|nuORF	REV__ENST00000482023.5_1_1:249144411-249145095:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	594.1824340820312	2	594.298767	1186.58298	-0.71917	-0.0004274	-1.2214	-0.00072585	-1.9405	-0.0011533	594.2978362794432	67.526	0.5594	67.526	67.245	67.804	0					13	10	2	0	0	0	0.98673	1	24390	24390		6.6304	0	1	2379200	+		52650	25273	38288	38593	51399	51399					-0.0028470243273659435
TDSLCSTLNS	10	Unmodified	_TDSLCSTLNS_					0	0	0		TANC1|p.P191L|1|0.39|ENSG00000115183|chr2:159150446-159150446|C/T|missense_variant	TANC1|p.P191L|1|0.39|ENSG00000115183|chr2:159150446-159150446|C/T|missense_variant	TANC1|p.P191L|1|0.39|ENSG00000115183|chr2:159150446-159150446|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	520.6578369140625	2	520.731871	1039.44919	-0.51353	-0.00026741	-0.57733	-0.00030063	-1.0909	-0.00056805	520.7316133265873	73.969	0.5573	73.969	73.69	74.247	0					14	10	2	0	0	0	0.71466	1	26914	26914		5.7319	0	1	1800600			52651	29293	38289	38594	51400	51400					-0.06895684529968094
TDSLCSTLNS	10	Unmodified	_TDSLCSTLNS_					0	0	0		TANC1|p.P191L|1|0.39|ENSG00000115183|chr2:159150446-159150446|C/T|missense_variant	TANC1|p.P191L|1|0.39|ENSG00000115183|chr2:159150446-159150446|C/T|missense_variant	TANC1|p.P191L|1|0.39|ENSG00000115183|chr2:159150446-159150446|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	520.731871	1039.44919	-0.51353	-0.00026741	-0.57733	-0.00030063	-1.0909	-0.00056805	520.7316133265873	73.969	0.5573	73.969	73.69	74.247	0	0.019564	-1.7525E-05	NaN	5.7319	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1800600			52652	29293	38289	38594							-0.06895684529968094
TDSNYMSGGSM	11	Unmodified	_TDSNYMSGGSM_					0	0	0			REV__ENSG00000172671|ENST00000344646|ZFAND4	REV__ENSG00000172671|ENST00000344646|ZFAND4	MSMS	A375_MHC_IP_R2	2	575.166259765625	2	575.212989	1148.41142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.607	1	51.361	50.861	51.861	0.75406								0	0	0	0.16258	1	19031	19031		5.2969	0.54088	1		+		52653	21162	38290	38595	51401	51401					-0.15684518787065826
TDSPVVRSF	9	Unmodified	_TDSPVVRSF_					0	0	0			REV__nc|ENSG00000124493|Q14833-3|GRM4	REV__nc|ENSG00000124493|Q14833-3|GRM4	MULTI-SECPEP	A375_MHC_IP_R2	2	503.46826171875	2	504.261456	1006.50836	-0.66582	-0.00033575	-0.31082	-0.00015673	-0.97664	-0.00049248	504.26125828015427	45.703	0.50218	46.468	46.303	46.805	0.76518					22	9	3	0	0	0	0.60917	1	17031	17031		25.399	3.6527	1	4652000	+		52654	18308	38291	38596	51402	51402					0.00536579546530902
TDSWPPPRTY	10	Unmodified	_TDSWPPPRTY_					0	0	0			REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF	REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	406.9436950683594	3	407.196256	1218.56694	-0.39505	-0.00016086	0.32249	0.00013132	-0.072555	-2.9544E-05	407.1963412246319	24.377	0.50388	24.377	24.194	24.698	0					17	9	2	0	0	0	0.93873	1	7037	7037		2.8433	0	1	4375700	+		52655	17605	38292	38597	51403	51403					-0.03360363878982753
TDTASAPEPF	10	Unmodified	_TDTASAPEPF_					0	0	0		ENST00000303277.6_1_4:1718443-1718770:-|nuORF	ENST00000303277.6_1_4:1718443-1718770:-|nuORF	ENST00000303277.6_1_4:1718443-1718770:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	518.6769409179688	2	518.235104	1034.45566	-0.53443	-0.00027696	0.25116	0.00013016	-0.28327	-0.0001468	518.235124516696	50.315	0.91653	50.315	49.998	50.915	0					34	17	3	0	0	0	0.70329	1	17818	17818		10.824	2.9138	1	6306000			52656	10555	38293	38598	51404	51404					-0.06019423306952376
TDTHEKSF	8	Unmodified	_TDTHEKSF_					0	0	0			REV__ENSG00000134247|ENST00000393203|PTGFRN	REV__ENSG00000134247|ENST00000393203|PTGFRN	MULTI-MSMS	A375_MHC_IP_R1	1	483.1219787597656	2	482.722164	963.429775	-0.14169	-6.8399E-05	-0.38174	-0.00018428	-0.52344	-0.00025268	482.7218946509964	92.37	0.65903	92.37	92.059	92.718	0					21	12	2	0	0	0	0.77123	1	33923	33923		14.582	0.67564	1	3423300	+		52657	18761	38294	38599	51405	51405					-0.053402727585535104
TDTHEKSF	8	Unmodified	_TDTHEKSF_					0	0	0			REV__ENSG00000134247|ENST00000393203|PTGFRN	REV__ENSG00000134247|ENST00000393203|PTGFRN	MULTI-MSMS	A375_MHC_IP_R2	2	483.12152099609375	2	482.722164	963.429775	-0.49042	-0.00023674	-0.48506	-0.00023415	-0.97548	-0.00047088	482.7217786301068	91.62	0.76004	92.354	92.071	92.831	0.7345					29	14	3	0	0	0	0.77123	1	34833	34833		14.582	2.0501	1	3824500	+		52658	18761	38294	38599	51406	51406					-0.053402727585535104
TDTHEKSF	8	Unmodified	_TDTHEKSF_					0	0	0			REV__ENSG00000134247|ENST00000393203|PTGFRN	REV__ENSG00000134247|ENST00000393203|PTGFRN	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	482.722164	963.429775	-0.14169	-6.8399E-05	-0.38174	-0.00018428	-0.52344	-0.00025268	482.7218946509964	92.37	0.65903	92.37	92.059	92.718	0	0.0078152	4.3632E-05	NaN	14.582	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3423300	+		52659	18761	38294	38599							-0.053402727585535104
TDTHRWRRRDH	11	Unmodified	_TDTHRWRRRDH_					0	0	0			REV__ENSG00000174010|ENST00000328046|KLHL15	REV__ENSG00000174010|ENST00000328046|KLHL15	MSMS	A375_MHC_IP_R1	1	512.660888671875	3	512.594406	1534.76139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.38	1	19.38	18.88	19.88	0								0	0	0	0.16337	1	4771	4771		0.40827	0	1		+		52660	21259	38295	38600	51407	51407					0.015398250494854437
TDTIDVDIPD	10	Unmodified	_TDTIDVDIPD_					0	0	0		ABCC6|p.V1055I|1|0.42|ENSG00000091262|chr16:16165766-16165766|C/T|missense_variant	ABCC6|p.V1055I|1|0.42|ENSG00000091262|chr16:16165766-16165766|C/T|missense_variant	ABCC6|p.V1055I|1|0.42|ENSG00000091262|chr16:16165766-16165766|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	367.9453430175781	3	368.508276	1102.503	0.47751	0.00017596	-0.58605	-0.00021596	-0.10855	-4E-05	368.8424414737603	35.599	0.20467	35.599	35.421	35.625	0					5	3	2	0	0	0	0.93799	1	11822	11822		0.62683	0	1	841050			52661	14	38296	38601	51408	51408					-0.04415188826624217
TDTKIHEHF	9	Unmodified	_TDTKIHEHF_					0	0	0			REV__nc|ENSG00000131115|Q86WZ6-2|ZNF227	REV__nc|ENSG00000131115|Q86WZ6-2|ZNF227	MULTI-SECPEP	A375_MHC_IP_R1	1	564.6897583007812	2	564.277638	1126.54072	-0.54658	-0.00030842	0.36603	0.00020654	-0.18055	-0.00010188	564.2779814142874	25.556	0.60923	25.556	25.408	26.017	0					17	11	2	0	0	0	0.69179	1	7422	7422		17.113	0	1	3255200	+		52662	18590	38297	38602	51409	51409					-0.017486330504880243
TDTKKLEMT	9	Unmodified	_TDTKKLEMT_					0	0	0		MUC16|p.E9221K|1|0.09|ENSG00000181143|chr19:8949109-8949109|C/T|missense_variant	MUC16|p.E9221K|1|0.09|ENSG00000181143|chr19:8949109-8949109|C/T|missense_variant	MUC16|p.E9221K|1|0.09|ENSG00000181143|chr19:8949109-8949109|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	356.6047058105469	3	356.18648	1065.53761	0.13898	4.9504E-05	0.50989	0.00018162	0.64887	0.00023112	356.52101474838344	20.562	0.40855	20.562	20.384	20.793	0					9	7	2	0	0	0	0.73415	1	5294	5294		2.2828	0	1	727230			52663	14416	38298	38603	51410	51410					0.007463557805067467
TDTKLEQKLGQ	11	Unmodified	_TDTKLEQKLGQ_					0	0	0			REV__ENST00000556539.5_1_12:56737175-56743495:-|nuORF	REV__ENST00000556539.5_1_12:56737175-56743495:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	420.15509033203125	3	420.897987	1259.67213	-0.301	-0.00012669	-3.2913	-0.0013853	-3.5923	-0.001512	421.23189403080585	35.666	0.45563	36.429	36.183	36.638	0.76338					12	8	2	0	0	0	0.88884	1	12998	12998		23.016	8.0585	1	859910	+		52664	21005	38299	38604	51411	51411					0.05268132526748559
TDTMVYFVGE	10	Unmodified	_TDTMVYFVGE_					0	0	0		ENSG00000115825|ENST00000234179|PRKD3;nc|ENSG00000115825|O94806-2|PRKD3;ENST00000494667.5_1_2:37496701-37543667:-|nuORF;PRKD3|p.A789Mfs*21|1|0.16|ENSG00000115825|chr2:37256710-37256711|-/AT|frameshift_variant	ENSG00000115825|ENST00000234179|PRKD3	ENSG00000115825|ENST00000234179|PRKD3	MULTI-SECPEP	A375_MHC_IP_R2	2	581.6442260742188	2	581.260265	1160.50598	-0.31719	-0.00018437	2.9182	0.0016962	2.601	0.0015118	581.261578641712	76.211	0.5584	76.951	76.64	77.199	0.74052					13	10	2	0	0	0	0.91556	1	28962	28962		10.074	5.3179	1	1118500			52665	3342	38300	38605	51412	51412					-0.06785636973427245
TDTPEERKL	9	Unmodified	_TDTPEERKL_					0	0	0			REV__nc|ENSG00000165244|Q7RTV3-2|ZNF367	REV__nc|ENSG00000165244|Q7RTV3-2|ZNF367	MULTI-SECPEP	A375_MHC_IP_R1	1	362.96441650390625	3	363.524261	1087.55095	-0.061872	-2.2492E-05	-0.51116	-0.00018582	-0.57303	-0.00020831	363.5240385644729	23.915	0.25426	23.915	23.787	24.042	0					6	4	2	0	0	0	0.69507	1	6679	6679		9.544	1.5986	1	2546200	+		52666	20566	38301	38606	51413	51413					0.010679298841068885
TDTPEERKL	9	Unmodified	_TDTPEERKL_					0	0	0			REV__nc|ENSG00000165244|Q7RTV3-2|ZNF367	REV__nc|ENSG00000165244|Q7RTV3-2|ZNF367	MULTI-MATCH	A375_MHC_IP_R2	2		3	363.524261	1087.55095	-0.38976	-0.00014169	-0.093433	-3.3965E-05	-0.48319	-0.00017565	363.52426482264383	23.273	0.1516	23.903	23.777	23.928	0.63014	-0.0059879	0.00043032	NaN	9.544	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1045500	+		52667	20566	38301	38606							0.010679298841068885
TDTPRFALPQ	10	Unmodified	_TDTPRFALPQ_					0	0	0		nc|ENSG00000157833|Q75VX8-3|GAREM2;nc|ENSG00000157833|Q75VX8-2|GAREM2;ENSG00000157833|ENST00000401533|GAREM2	nc|ENSG00000157833|Q75VX8-3|GAREM2	nc|ENSG00000157833|Q75VX8-3|GAREM2	MULTI-MSMS	A375_MHC_IP_R2	2	382.5802917480469	3	382.536501	1144.58767	-0.43245	-0.00016543	3.3688	0.0012887	2.9363	0.0011233	382.5379427945443	23.07	0.30612	23.7	23.572	23.878	0.63014					7	5	2	0	0	0	0.6806	1	7344	7344		8.9762	0	1	887700			52668	6269	38302	38607	51414	51414					0.02116226500652374
TDTQETKQLY	10	Unmodified	_TDTQETKQLY_					0	0	0			REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	MULTI-MSMS	A375_MHC_IP_R2	2	613.190185546875	2	613.7986	1225.58265	-0.4489	-0.00027554	-0.52257	-0.00032075	-0.97147	-0.00059629	613.7981062298852	47.745	1.112	48.506	48.174	49.286	0.76128					35	21	2	0	0	0	0.70496	1	18004	18004		10.074	0	1	7769600	+		52669	27531	38303	38608	51415	51415					-0.021121221526072986
TDTQTSMFL	9	Unmodified	_TDTQTSMFL_					0	0	0		ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-4|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	MSMS	A375_MHC_IP_R1	1	522.1871337890625	2	522.239332	1042.46411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.052	1	57.052	56.552	57.552	0								0	0	0	0.15468	1	20454	20454		13.906	1.3745	1				52670	1139	38304	38609	51416	51416					-0.055421926619601436
TDVCALQMILP	11	Unmodified	_TDVCALQMILP_					0	0	0			REV__ENSG00000196242|ENST00000641802|OR2C3	REV__ENSG00000196242|ENST00000641802|OR2C3	MULTI-MSMS	A375_MHC_IP_R2	2	402.2752685546875	3	401.875249	1202.60392	-0.36912	-0.00014834	0.22108	8.8846E-05	-0.14804	-5.9494E-05	401.8753205170134	24.662	0.81189	25.306	24.857	25.668	0.64368					36	15	3	0	0	0	0.69231	1	8065	8065		9.2438	1.2984	1	20870000	+		52671	22176	38305	38610	51417	51417					0.01071848350898108
TDVDNPNNI	9	Unmodified	_TDVDNPNNI_					0	0	0		ENSG00000135914|ENST00000258400|HTR2B	ENSG00000135914|ENST00000258400|HTR2B	ENSG00000135914|ENST00000258400|HTR2B	MSMS	A375_MHC_IP_R1	1	501.1778259277344	2	501.230353	1000.44615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.798	1	85.798	85.298	86.298	0								0	0	0	0.15411	1	31449	31449		14.838	0.93222	1				52672	4727	38306	38611	51418	51418					-0.054051915924674176
TDVEFHVPDSP	11	Unmodified	_TDVEFHVPDSP_					0	0	0			REV__nc|ENSG00000164304|Q8TC20-4|CAGE1	REV__nc|ENSG00000164304|Q8TC20-4|CAGE1	MULTI-MSMS	A375_MHC_IP_R1	1	622.1853637695312	2	621.785492	1241.55643	-0.10602	-6.5925E-05	-0.15408	-9.5802E-05	-0.2601	-0.00016173	621.785318936977	49.565	0.5584	49.565	49.235	49.793	0					23	10	3	0	0	0	0.50881	1	17506	17506		38.176	38.176	1	7167700	+		52673	20479	38307	38612	51419	51419					-0.05468391324075128
TDVEFHVPDSP	11	Unmodified	_TDVEFHVPDSP_					0	0	0			REV__nc|ENSG00000164304|Q8TC20-4|CAGE1	REV__nc|ENSG00000164304|Q8TC20-4|CAGE1	MULTI-MSMS	A375_MHC_IP_R2	2	622.1849975585938	2	621.785492	1241.55643	-1.0067	-0.00062596	0.31536	0.00019609	-0.69136	-0.00042988	621.7857852372236	49.768	0.76225	50.522	50.193	50.955	0.75406					27	14	3	0	0	0	0.50881	1	18675	18675		38.176	12.776	1	7127500	+		52674	20479	38307	38612	51420	51420					-0.05468391324075128
TDVEFHVPDSP	11	Unmodified	_TDVEFHVPDSP_					0	0	0			REV__nc|ENSG00000164304|Q8TC20-4|CAGE1	REV__nc|ENSG00000164304|Q8TC20-4|CAGE1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	621.785492	1241.55643	-0.85095	-0.00052911	0.0045439	2.8254E-06	-0.84641	-0.00052628	621.7855324792225	48.857	0.76424	49.615	49.18	49.944	0.75737	0.024763	9.6638E-05	NaN	38.176	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5738700	+		52675	20479	38307	38612							-0.05468391324075128
TDVFFKDDP	9	Unmodified	_TDVFFKDDP_					0	0	0			REV__tr|U7SQV1|U7SQV1_FUSNUPhosphoenolpyruvatecarboxykinase(ATP)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=pckAPE=3SV=1	REV__tr|U7SQV1|U7SQV1_FUSNUPhosphoenolpyruvatecarboxykinase(ATP)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=pckAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	541.6849975585938	2	542.253297	1082.49204	-0.88845	-0.00048176	-0.075223	-4.079E-05	-0.96367	-0.00052255	542.253623230748	32.676	0.50896	33.413	33.162	33.671	0.73692					14	9	2	0	0	0	0.69507	1	11669	11669		9.3831	5.4387	1	1219800	+		52676	28385	38308	38613	51421	51421					-0.04590546410236129
TDVIDDKKY	9	Unmodified	_TDVIDDKKY_					0	0	0			REV__ENST00000494303.1_1_4:165933772-165933994:-|nuORF	REV__ENST00000494303.1_1_4:165933772-165933994:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	366.6172790527344	3	366.188878	1095.5448	-0.17932	-6.5665E-05	-0.66032	-0.0002418	-0.83964	-0.00030747	366.1882132453112	19.005	0.23048	19.608	19.452	19.683	0.60308					7	4	2	0	0	0	0.73363	1	5791	5791		4.1895	0	1	2366700	+		52677	25433	38309	38614	51422	51422					0.0008541165257156536
TDVIMMSC	8	Unmodified	_TDVIMMSC_					0	0	0			REV__nc|ENSG00000196535|Q92614-5|MYO18A	REV__nc|ENSG00000196535|Q92614-5|MYO18A	MULTI-SECPEP	A375_MHC_IP_R2	2	899.881591796875	1	899.367123	898.359846	-0.41334	-0.00037175	2.1716	0.001953	1.7582	0.0015813	899.3718196970297	131.43	0.25693	131.62	131.44	131.7	0.18953					6	4	2	0	0	0	0.94479	1	51640	51640		13.508	5.5977	1	2000000	+		52678	22206	38310	38615	51423	51423					-0.09339934014690243
TDVKRKITSN	10	Unmodified	_TDVKRKITSN_					0	0	0			REV__nc|ENSG00000101057|P10244-2|MYBL2	REV__nc|ENSG00000101057|P10244-2|MYBL2	MULTI-MSMS	A375_MHC_IP_R2	2	388.2565612792969	3	387.891055	1160.65134	-0.077349	-3.0003E-05	0.42921	0.00016649	0.35186	0.00013648	387.8912453485832	27.479	0.30552	28.158	27.945	28.251	0.67857					6	5	2	0	0	0	0.69833	1	9409	9409		11.518	0.61892	1	1413300	+		52679	17140	38311	38616	51424	51424					0.07743586937772307
TDVLAVSMML	10	Unmodified	_TDVLAVSMML_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	A375_MHC_IP_R1	1	541.21875	2	540.277403	1078.54025	-0.63691	-0.00034411	-0.11199	-6.0507E-05	-0.74891	-0.00040462	540.2772712928216	77.383	1.6793	77.383	76.673	78.352	0					66	32	3	0	0	0	0.62155	1	28323	28323		19.257	4.4187	1	3036100			52680	6889	38312	38617	51425	51425					0.0041248791380894545
TDVLLSFEEKT	11	Unmodified	_TDVLLSFEEKT_					0	0	0		ZNF804A|p.S271F|1|0.12|ENSG00000170396|chr2:184936208-184936208|C/T|missense_variant	ZNF804A|p.S271F|1|0.12|ENSG00000170396|chr2:184936208-184936208|C/T|missense_variant	ZNF804A|p.S271F|1|0.12|ENSG00000170396|chr2:184936208-184936208|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	641.7063598632812	2	641.332276	1280.65	-0.90343	-0.0005794	1.1957	0.00076682	0.29224	0.00018743	641.3328972018279	26.441	0.45573	26.441	26.17	26.626	0					11	8	2	0	0	0	0.9574	1	7939	7939		14.405	3.6059	1	2233700			52681	30247	38313	38618	51426	51426					0.020899080583376417
TDVNDNPPV	9	Unmodified	_TDVNDNPPV_					0	0	0		ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3	ENSG00000165323|ENST00000525166|FAT3	ENSG00000165323|ENST00000525166|FAT3	MULTI-SECPEP	A375_MHC_IP_R1	1	485.1384582519531	2	485.727446	969.44034	-0.17901	-8.6949E-05	-1.3471	-0.00065431	-1.5261	-0.00074126	485.72653717198153	91.979	0.50504	91.979	91.706	92.211	0					12	9	2	0	0	0	0.35487	1	33823	33823		22.736	11.912	1	733660			52682	6942	38314	38619	51427	51427					-0.04560290104143405
TDVNECELYG	10	Unmodified	_TDVNECELYG_					0	0	0		nc|ENSG00000144152|Q53RD9-2|FBLN7	nc|ENSG00000144152|Q53RD9-2|FBLN7	nc|ENSG00000144152|Q53RD9-2|FBLN7	MULTI-SECPEP	A375_MHC_IP_R1	1	571.2111206054688	2	571.737154	1141.45975	-0.20352	-0.00011636	-1.9115	-0.0010928	-2.115	-0.0012092	571.7359847892856	31.692	0.30494	31.692	31.514	31.819	0					7	5	2	0	0	0	0.92389	1	10197	10197		3.9444	2.2918	1	2225000			52683	14656	38315	38620	51428	51428					-0.10531701875538602
TDVRRRYWNAY	11	Unmodified	_TDVRRRYWNAY_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MSMS	A375_MHC_IP_R1	1	500.62432861328125	3	500.588258	1498.74294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.968	1	52.968	52.468	53.468	0								0	0	0	0.16305	1	18864	18864		2.8433	1.3882	1				52684	6526	38316	38621	51429	51429					0.013522703549824655
TDVSQIFPS	9	Unmodified	_TDVSQIFPS_					0	0	0		CON__Q28107	CON__Q28107	CON__Q28107	MULTI-MSMS	A375_MHC_IP_R2	2	497.6485900878906	2	497.248015	992.481476	-0.41881	-0.00020825	0.2778	0.00013814	-0.14101	-7.0116E-05	497.24800764174756	92.838	1.0655	93.577	93.14	94.205	0.73902					56	20	4	0	0	0	0.4867	1	35444	35444		20.454	0	1	17669000		+	52685	607	38317	38622	51430	51430					-0.015065290646589347
TDVSSNCRE	9	Unmodified	_TDVSSNCRE_					0	0	0		CAPN5|p.P492S|1|0.3|ENSG00000149260|chr11:77120896-77120896|C/T|missense_variant	CAPN5|p.P492S|1|0.3|ENSG00000149260|chr11:77120896-77120896|C/T|missense_variant	CAPN5|p.P492S|1|0.3|ENSG00000149260|chr11:77120896-77120896|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	505.6690368652344	2	505.714013	1009.41347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.934	1	38.708	38.208	39.208	0.77451								0	0	0	0.15486	1	13921	13921		11.64	0	1				52686	288	38318	38623	51431	51431					-0.0908572198696902
TDVVEGQEY	9	Unmodified	_TDVVEGQEY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R2	2	522.210205078125	2	520.232561	1038.45057	-0.7209	-0.00037504	-0.0027586	-1.4351E-06	-0.72366	-0.00037647	520.2325610994383	39.419	1.3228	40.194	39.708	41.031	0.77451					79	25	5	0	0	0	0.6898	1	14437	14437		7.9102	0.62092	1	214880000			52687	6151;14694	38319	38624	51432	51432					-0.06711727169545156
TDVYTWGDNT	10	Unmodified	_TDVYTWGDNT_					0	0	0		IBTK|p.Y927Tfs*4|1|0.31|ENSG00000005700|chr6:82201433-82201433|A/-|frameshift_variant;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;ENSG00000005700|ENST00000306270|IBTK;ENST00000505222.5_1_6:82901346-82950269:-|nuORF	IBTK|p.Y927Tfs*4|1|0.31|ENSG00000005700|chr6:82201433-82201433|A/-|frameshift_variant	IBTK|p.Y927Tfs*4|1|0.31|ENSG00000005700|chr6:82201433-82201433|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	586.6490478515625	2	586.248743	1170.48293	-0.2513	-0.00014733	-0.17446	-0.00010228	-0.42577	-0.00024961	586.7500691020706	63.76	0.91606	63.76	63.477	64.393	0					24	17	2	0	0	0	0.50967	1	23056	23056		27.629	27.629	1	3220900			52688	898	38320	38625	51433	51433					-0.09548939766568765
TDVYTWGDNT	10	Unmodified	_TDVYTWGDNT_					0	0	0		IBTK|p.Y927Tfs*4|1|0.31|ENSG00000005700|chr6:82201433-82201433|A/-|frameshift_variant;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;ENSG00000005700|ENST00000306270|IBTK;ENST00000505222.5_1_6:82901346-82950269:-|nuORF	IBTK|p.Y927Tfs*4|1|0.31|ENSG00000005700|chr6:82201433-82201433|A/-|frameshift_variant	IBTK|p.Y927Tfs*4|1|0.31|ENSG00000005700|chr6:82201433-82201433|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	586.64892578125	2	586.248743	1170.48293	-0.4876	-0.00028586	-0.15038	-8.8161E-05	-0.63799	-0.00037402	586.248717060392	63.225	0.60944	63.967	63.634	64.244	0.74248					27	11	3	0	0	0	0.50967	1	23954	23954		27.629	6.0918	1	2577300			52689	898	38320	38625	51434	51434					-0.09548939766568765
TDVYVNNEW	9	Unmodified	_TDVYVNNEW_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	A375_MHC_IP_R1	1	1140.402099609375	1	1139.50038	1138.4931	-0.02136	-2.4339E-05	-0.15372	-0.00017516	-0.17508	-0.0001995	1139.500251874019	77.008	1.4257	77.008	76.622	78.048	0					84	27	5	0	0	0	0.0083527	1	28086	28086		128.93	99.851	1	109170000			52690	2847	38321	38626	51435	51435					-0.07060332041328365
TDVYVNNEW	9	Unmodified	_TDVYVNNEW_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	A375_MHC_IP_R1	1	570.6536865234375	2	570.253828	1138.4931	-0.35912	-0.00020479	-0.090064	-5.136E-05	-0.44918	-0.00025615	570.2537706073946	77.006	2.439	77.006	76.572	79.011	0					125	47	4	0	0	0	0.0099819	1	28222	28222		122.18	69.911	1	210540000			52691	2847	38321	38626	51436	51436					-0.07060332041328365
TDVYVNNEW	9	Unmodified	_TDVYVNNEW_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	A375_MHC_IP_R2	2	570.6538696289062	2	570.253828	1138.4931	-0.30307	-0.00017283	-0.16227	-9.2535E-05	-0.46534	-0.00026536	570.253712370913	76.432	1.9824	77.173	76.691	78.673	0.74052					117	38	4	0	0	0	0.0083527	3	29137	28923;29137;29357		128.93	85.074	1	211180000			52692	2847	38321	38626	51437;51438;51439	51438					-0.07060332041328365
TDVYVNNEW	9	Unmodified	_TDVYVNNEW_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MATCH	A375_MHC_IP_R2	2		1	1139.50038	1138.4931	0.14389	0.00016397	-0.28969	-0.0003301	-0.1458	-0.00016614	1139.5000203001946	76.383	1.4709	77.124	76.792	78.263	0.74052	0.057764	-0.0001052	NaN	128.93	76	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97957000			52693	2847	38321	38626							-0.07060332041328365
TDWCCSRKY	9	Unmodified	_TDWCCSRKY_					0	0	0			REV__chr1:161583814-161588422|100|11.86|0.36|5.04|+|1|FCGR2C,FCGR2C|1	REV__chr1:161583814-161588422|100|11.86|0.36|5.04|+|1|FCGR2C,FCGR2C|1	MULTI-MSMS	A375_MHC_IP_R1	1	581.64453125	2	581.244426	1160.4743	-0.27905	-0.0001622	0.37136	0.00021585	0.092304	5.3651E-05	581.2445877755865	77.084	1.1184	77.084	76.572	77.69	0					66	21	4	0	0	0	0.2002	1	28026	28026		37.974	11.09	1	25217000	+		52694	15670	38322	38627	51440	51440					-0.0995190820838161
TDWCCSRKY	9	Unmodified	_TDWCCSRKY_					0	0	0			REV__chr1:161583814-161588422|100|11.86|0.36|5.04|+|1|FCGR2C,FCGR2C|1	REV__chr1:161583814-161588422|100|11.86|0.36|5.04|+|1|FCGR2C,FCGR2C|1	MULTI-MSMS	A375_MHC_IP_R2	2	581.6442260742188	2	581.244426	1160.4743	-0.32615	-0.00018957	0.27671	0.00016084	-0.049432	-2.8732E-05	581.2445522015217	76.413	1.1131	77.153	76.792	77.905	0.74052					58	21	4	0	0	0	0.4867	1	28962	28962		20.454	0	1	23989000	+		52695	15670	38322	38627	51441	51441					-0.0995190820838161
TDWCCSRKY	9	Unmodified	_TDWCCSRKY_					0	0	0			REV__chr1:161583814-161588422|100|11.86|0.36|5.04|+|1|FCGR2C,FCGR2C|1	REV__chr1:161583814-161588422|100|11.86|0.36|5.04|+|1|FCGR2C,FCGR2C|1	MULTI-SECPEP	A375_MHC_IP_R2	2	581.6442260742188	2	581.244426	1160.4743	-0.32615	-0.00018957	0.27671	0.00016084	-0.049432	-2.8732E-05	581.2445522015217	76.413	1.1131	77.153	76.792	77.905	0.74052					58	21	4	0	0	0	0.58271	1	28962	28962		20.454	1.1966	1	23989000	+		52696	15670	38322	38627	51442	51442					-0.0995190820838161
TDWCYDRTA	9	Unmodified	_TDWCYDRTA_					0	0	0		nc|ENSG00000165837|Q5W0A0-2|ERICH6B;ENSG00000165837|ENST00000298738|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	MULTI-MSMS	A375_MHC_IP_R1	1	566.1851806640625	2	565.732206	1129.44986	-0.20087	-0.00011364	2.0539	0.001162	1.853	0.0010483	566.2354084711786	45.702	0.40597	45.702	45.484	45.89	0					13	7	2	0	0	0	0.2002	1	16014	16014		37.974	27.15	1	2099800			52697	6994	38323	38628	51443	51443					-0.1096884509024676
TDWIHFFV	8	Unmodified	_TDWIHFFV_					0	0	0			REV__ENST00000258646.3_1_13:50108107-50108230:-|nuORF	REV__ENST00000258646.3_1_13:50108107-50108230:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	533.3417358398438	2	532.763635	1063.51272	-0.57864	-0.00030828	2.2659	0.0012072	1.6873	0.00089891	532.7650130628298	51.024	0.35445	51.024	50.814	51.168	0					8	6	2	0	0	0	0.90224	1	18141	18141		19.439	8.6395	1	1211100	+		52698	23168	38324	38629	51444	51444					-0.016499112399060323
TDWTWPLKY	9	Unmodified	_TDWTWPLKY_					0	0	0			REV__ENSG00000179954|ENST00000389623|SSC5D	REV__ENSG00000179954|ENST00000389623|SSC5D	MSMS	A375_MHC_IP_R1	1	403.9159240722656	3	403.86948	1208.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.066	1	38.066	37.566	38.566	0								0	0	0	0.15486	1	12879	12879		7.1017	2.0542	1		+		52699	21592	38325	38630	51445	51445					-0.00933987868256736
TDWYFQTVQKW	11	Unmodified	_TDWYFQTVQKW_					0	0	0			REV__THBS1|p.S1046F|1|0.28|ENSG00000137801|chr15:39593538-39593538|C/T|missense_variant	REV__THBS1|p.S1046F|1|0.28|ENSG00000137801|chr15:39593538-39593538|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	501.1926574707031	3	501.241865	1500.70376	-0.63463	-0.0003181	0.0030515	1.5296E-06	-0.63158	-0.00031657	501.2417169483715	48.574	0.20254	49.332	49.231	49.434	0.75737					5	3	2	0	0	0	1.0002	1	18210	18210		2.8433	1.7335	1	324230	+		52700	28103	38326	38631	51446	51446					-0.026558747193121235
TDYAEKRKQ	9	Unmodified	_TDYAEKRKQ_					0	0	0		ENST00000487771.1_1_2:192857429-192863930:-|nuORF	ENST00000487771.1_1_2:192857429-192863930:-|nuORF	ENST00000487771.1_1_2:192857429-192863930:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	380.5999755859375	3	380.199889	1137.57784	0.21197	8.0592E-05	-0.085382	-3.2462E-05	0.12659	4.813E-05	380.1997657147579	27.183	0.50483	27.183	26.978	27.482	0					16	9	2	0	0	0	0.41879	1	8204	8204		23.79	1.1317	1	7563100			52701	12601	38327	38632	51447	51447					0.01455038495282679
TDYDFASPSL	10	Unmodified	_TDYDFASPSL_					0	0	0			REV__nc|ENSG00000163539|O75122-3|CLASP2	REV__nc|ENSG00000163539|O75122-3|CLASP2	MULTI-MSMS	A375_MHC_IP_R1	1	558.1762084960938	2	558.248212	1114.48187	-0.39421	-0.00022007	-0.64304	-0.00035898	-1.0373	-0.00057904	558.2475622711238	42.461	0.45487	42.461	42.183	42.638	0					17	8	3	0	0	0	0.60556	1	14689	14689		20.454	20.454	1	4152600	+		52702	27318	38328	38633	51448	51448					-0.07079154135476529
TDYHFHFY	8	Unmodified	_TDYHFHFY_					0	0	0		nc|ENSG00000124920|Q9Y2G1-2|MYRF;ENSG00000124920|ENST00000278836|MYRF	nc|ENSG00000124920|Q9Y2G1-2|MYRF	nc|ENSG00000124920|Q9Y2G1-2|MYRF	MSMS	A375_MHC_IP_R2	2	565.2421875	2	565.240524	1128.46649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.134	1	55.885	55.385	56.385	0.75075								0	0	0	0.16876	1	20822	20822		10.183	0.83596	1				52703	3938	38329	38634	51449	51449					-0.0925997614199332
TDYPDIHAA	9	Unmodified	_TDYPDIHAA_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1;nc|ENSG00000184445|P50748-2|KNTC1;ENST00000436959.7_1_12:123087118-123101977:+|nuORF	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-SECPEP	A375_MHC_IP_R1	1	502.4537353515625	2	501.729989	1001.44543	-0.53411	-0.00026798	0.79513	0.00039894	0.26102	0.00013096	501.7301271788183	27.081	0.5029	27.081	26.878	27.381	0					16	9	2	0	0	0	0.55359	1	8104	8104		15.847	4.2069	1	2641000			52704	8585	38330	38635	51450	51450					-0.05523986241541934
TDYRAGSSF	9	Unmodified	_TDYRAGSSF_					0	0	0		nc|ENSG00000107771|Q9H7U1-2|CCSER2;nc|ENSG00000107771|Q9H7U1|CCSER2;ENSG00000107771|ENST00000372088|CCSER2	nc|ENSG00000107771|Q9H7U1-2|CCSER2	nc|ENSG00000107771|Q9H7U1-2|CCSER2	MSMS	A375_MHC_IP_R2	2	502.1419677734375	2	502.227613	1002.44067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.604	1	98.36	97.86	98.86	0.75586								0	0	0	0.14905	1	37044	37044		23.148	2.2772	1				52705	2757	38331	38636	51451	51451					-0.06044870384278056
TEAAGENPLE	10	Unmodified	_TEAAGENPLE_					0	0	0		nc|ENSG00000179262|P54725-2|RAD23A;ENSG00000179262|ENST00000586534|RAD23A	nc|ENSG00000179262|P54725-2|RAD23A	nc|ENSG00000179262|P54725-2|RAD23A	MSMS	A375_MHC_IP_R1	1	515.6898193359375	2	515.738011	1029.46147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.336	1	52.336	51.836	52.836	0								0	0	0	0.14862	1	18608	18608		20.454	1.0146	1				52706	8217	38332	38637	51452	51452					-0.0520832479528508
TEAAHPIRLF	10	Unmodified	_TEAAHPIRLF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R1	1	385.9488525390625	3	385.548741	1153.62439	0.27977	0.00010787	-0.53907	-0.00020784	-0.2593	-9.9972E-05	385.54855328865466	55.363	1.0675	55.363	55.177	56.244	0					33	20	3	0	0	0	0.68889	1	19821	19821		14.218	11.146	1	3551800			52707	7864	38333	38638	51453	51453					0.0537252311719385
TEAAHPIRLF	10	Unmodified	_TEAAHPIRLF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R2	2	385.9486389160156	3	385.548741	1153.62439	-0.34221	-0.00013194	-0.081066	-3.1255E-05	-0.42328	-0.00016319	385.5487352373956	54.475	1.2706	55.226	54.763	56.034	0.75075					39	24	3	0	0	0	0.67901	1	20578	20578		14.957	11.885	1	2324700			52708	7864	38333	38638	51454	51454					0.0537252311719385
TEAALLDSSLE	11	Unmodified	_TEAALLDSSLE_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;ENST00000598364.1_1_19:46318820-46320367:-|nuORF;ENST00000598155.5_1_19:46318820-46327397:-|nuORF	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	A375_MHC_IP_R1	1	574.4451904296875	2	574.787701	1147.56085	-0.24075	-0.00013838	1.1595	0.00066648	0.91877	0.0005281	574.7881668161452	47.314	0.41173	47.314	47.055	47.467	0					11	7	2	0	0	0	0.95991	1	16540	16540		13.042	9.7612	1	2239900			52709	3986	38334	38639	51455	51455					-0.007029269011809447
TEAALLRHVP	10	Unmodified	_TEAALLRHVP_					0	0	0			REV__ENST00000381095.7_2_X:6146731-6146848:-|nuORF	REV__ENST00000381095.7_2_X:6146731-6146848:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	553.1513061523438	2	553.819473	1105.62439	-0.11827	-6.5498E-05	-0.98085	-0.00054321	-1.0991	-0.00060871	554.3203159715449	44.58	0.30655	44.58	44.42	44.727	0					8	5	2	0	0	0	0.91909	1	15545	15545		2.9952	0	1	1250300	+		52710	24228	38335	38640	51456	51456					0.07580523117235316
TEAARPWGP	9	Unmodified	_TEAARPWGP_					0	0	0		ENST00000592982.2_1_19:33794203-33794776:+|nuORF	ENST00000592982.2_1_19:33794203-33794776:+|nuORF	ENST00000592982.2_1_19:33794203-33794776:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	492.7101135253906	2	492.748516	983.482479	-0.35211	-0.0001735	-0.056506	-2.7843E-05	-0.40862	-0.00020135	492.74834508547156	86.198	0.61253	86.931	86.642	87.255	0.733					25	11	3	0	0	0	0.63811	1	32798	32798		12.532	0.89125	1	3325800			52711	13820	38336	38641	51457	51457					-0.009922699051003292
TEADLFHTI	9	Unmodified	_TEADLFHTI_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	A375_MHC_IP_R1	1	524.2032470703125	2	523.761289	1045.50803	-0.6163	-0.00032279	0.36669	0.00019206	-0.24961	-0.00013074	524.2623702542528	80.893	0.56	80.893	80.642	81.202	0					13	10	2	0	0	0	0.53748	1	29491	29491		24.021	8.1734	1	856250			52712	3941	38337	38642	51458	51458					-0.012908401733284336
TEADLQYGY	9	Unmodified	_TEADLQYGY_					0	0	0		nc|ENSG00000108094|Q13617-2|CUL2;ENSG00000108094|ENST00000374749|CUL2	nc|ENSG00000108094|Q13617-2|CUL2	nc|ENSG00000108094|Q13617-2|CUL2	MULTI-MSMS	A375_MHC_IP_R1	1	530.6348876953125	2	530.235104	1058.45566	-0.59712	-0.00031661	0.23199	0.00012301	-0.36513	-0.00019361	530.2351802859818	59.239	0.76242	59.239	58.736	59.498	0					21	14	2	0	0	0	0.27715	1	21330	21330		32.305	16.458	1	1334600			52713	2784	38338	38643	51459	51459					-0.07123423306939003
TEADLQYGY	9	Unmodified	_TEADLQYGY_					0	0	0		nc|ENSG00000108094|Q13617-2|CUL2;ENSG00000108094|ENST00000374749|CUL2	nc|ENSG00000108094|Q13617-2|CUL2	nc|ENSG00000108094|Q13617-2|CUL2	MULTI-SECPEP	A375_MHC_IP_R2	2	530.69580078125	2	530.235104	1058.45566	-0.94697	-0.00050211	-0.16802	-8.909E-05	-1.115	-0.0005912	530.2351837721649	58.689	0.60972	59.437	59.083	59.692	0.74812					14	11	2	0	0	0	0.55359	1	22127	22127		21.747	1.293	1	1344700			52714	2784	38338	38643	51460	51460					-0.07123423306939003
TEADVGITKF	10	Unmodified	_TEADVGITKF_					0	0	0		ENSG00000091127|ENST00000469408|PUS7;nc|ENSG00000091127|Q96PZ0-2|PUS7	ENSG00000091127|ENST00000469408|PUS7	ENSG00000091127|ENST00000469408|PUS7	MULTI-SECPEP	A375_MHC_IP_R2	2	541.1818237304688	2	540.782222	1079.54989	-0.93924	-0.00050793	-0.86102	-0.00046562	-1.8003	-0.00097355	540.7819303971331	55.285	0.50778	56.035	55.83	56.337	0.75075					21	9	3	0	0	0	0.63289	1	20903	20903		40.725	21.363	1	1993400			52715	1969	38339	38644	51461	51461					0.013297155152031337
TEADVGITKF	10	Unmodified	_TEADVGITKF_					0	0	0		ENSG00000091127|ENST00000469408|PUS7;nc|ENSG00000091127|Q96PZ0-2|PUS7	ENSG00000091127|ENST00000469408|PUS7	ENSG00000091127|ENST00000469408|PUS7	MULTI-MATCH	A375_MHC_IP_R1	1		2	540.782222	1079.54989	-0.52504	-0.00028393	-0.76779	-0.00041521	-1.2928	-0.00069914	540.7818220217566	56.086	0.50597	56.086	55.841	56.347	0	0.025431	3.2866E-05	NaN	40.725	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1891700			52716	1969	38339	38644							0.013297155152031337
TEADVNPKAY	10	Unmodified	_TEADVNPKAY_					0	0	0		ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	MULTI-MSMS	A375_MHC_IP_R1	1	554.669189453125	2	554.269478	1106.5244	-0.74104	-0.00041073	1.3814	0.00076566	0.64035	0.00035492	554.2694827785683	27.84	0.75506	27.84	27.533	28.288	0					37	14	4	0	0	0	0.00034917	1	8471	8471		151.48	80.764	1	17435000			52717	2124	38340	38645	51462	51462					-0.024597590072289677
TEADVNPKAY	10	Unmodified	_TEADVNPKAY_					0	0	0		ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	MULTI-MSMS	A375_MHC_IP_R2	2	554.6690063476562	2	554.269478	1106.5244	-0.74262	-0.00041161	1.3263	0.00073514	0.5837	0.00032353	554.2694718794146	27.234	0.56158	27.912	27.638	28.2	0.67857					32	10	5	0	0	0	2.5088E-05	1	9265	9265		154.75	84.037	1	18647000			52718	2124	38340	38645	51463	51463					-0.024597590072289677
TEAEDEAMKL	10	Unmodified	_TEAEDEAMKL_					0	0	0			REV__ENSG00000186432|ENST00000334256|KPNA4	REV__ENSG00000186432|ENST00000334256|KPNA4	MULTI-SECPEP	A375_MHC_IP_R2	2	380.2641906738281	3	379.509511	1135.5067	-0.085693	-3.2521E-05	-1.5788	-0.00059918	-1.6645	-0.0006317	379.50894523731137	28.084	0.35586	28.763	28.502	28.858	0.67857					8	6	2	0	0	0	0.92832	1	9701	9701		8.4443	2.7125	1	1176700	+		52719	21969	38341	38646	51464	51464					-0.055628423244115766
TEAEEFWGN	9	Unmodified	_TEAEEFWGN_					0	0	0		nc|ENSG00000050628|P43115-8|PTGER3	nc|ENSG00000050628|P43115-8|PTGER3	nc|ENSG00000050628|P43115-8|PTGER3	MULTI-MSMS	A375_MHC_IP_R1	1	541.7435302734375	2	541.724904	1081.43525	-0.3691	-0.00019995	1.0834	0.00058691	0.7143	0.00038696	541.7253864901533	107.71	0.46007	107.71	107.44	107.9	0					15	8	2	0	0	0	0.34064	2	39563	39530;39563		27.629	9.4825	1	1964600			52720	14467	38342	38647	51465;51466	51466					-0.1022059396673285
TEAERARQAQ	10	Unmodified	_TEAERARQAQ_					0	0	0		ENSG00000089847|ENST00000318934|ANKRD24;nc|ENSG00000089847|Q8TF21-2|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	MULTI-SECPEP	A375_MHC_IP_R2	2	580.18017578125	2	580.29435	1158.57415	-0.73062	-0.00042397	1.7091	0.00099176	0.97845	0.00056779	580.2951860586193	25.409	0.35548	26.053	25.873	26.229	0.64368					9	6	2	0	0	0	0.92957	1	8557	8557		3.2813	1.4371	1	3663900			52721	1937	38343	38648	51467	51467					0.001203687214456295
TEAETIQKL	9	Unmodified	_TEAETIQKL_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-SECPEP	A375_MHC_IP_R1	1	517.1819458007812	2	516.782222	1031.54989	-0.54279	-0.0002805	-0.094525	-4.8849E-05	-0.63732	-0.00032935	516.7821108357186	36.144	0.65941	36.144	35.881	36.541	0					33	12	3	0	0	0	5.1125E-05	1	12024	12024		173.69	88.045	1	15060000			52722	5030	38344	38649	51468	51468					0.035377155151991246
TEAETIQKL	9	Unmodified	_TEAETIQKL_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-SECPEP	A375_MHC_IP_R2	2	517.181884765625	2	516.782222	1031.54989	-0.99357	-0.00051346	0.19893	0.0001028	-0.79465	-0.00041066	516.7823104420912	35.371	0.80969	36.134	35.829	36.638	0.76338					39	15	4	0	0	0	0.0018556	1	12773	12773		148.27	75.3	1	16212000			52723	5030	38344	38649	51469	51469					0.035377155151991246
TEAFDSWE	8	Unmodified	_TEAFDSWE_					0	0	0		nc|ENSG00000138760|Q14108-2|SCARB2;ENSG00000138760|ENST00000264896|SCARB2	nc|ENSG00000138760|Q14108-2|SCARB2	nc|ENSG00000138760|Q14108-2|SCARB2	MULTI-MSMS	A375_MHC_IP_R1	1	492.7097473144531	2	492.700897	983.387241	-0.39172	-0.000193	1.154	0.00056859	0.7623	0.00037559	492.701957770322	87.488	0.66382	87.488	87.083	87.747	0					29	12	3	0	0	0	0.77123	2	31978	31978;32122		14.582	4.1604	1	3333500			52724	5028	38345	38650	51470;51471	51470					-0.10511667886805753
TEAFLADAKW	10	Unmodified	_TEAFLADAKW_					0	0	0		ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;ZMYND8|p.E1080Nfs*4|1|0.25|ENSG00000101040|chr20:47221432-47221433|TC/-|frameshift_variant;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	576.759033203125	2	576.290214	1150.56587	-0.3812	-0.00021968	0.25815	0.00014877	-0.12305	-7.091E-05	576.2904334543964	85.591	0.96593	85.591	85.005	85.971	0					44	18	3	0	0	0	0.16019	1	31475	31475		53.317	35.17	1	11407000			52725	2246	38346	38651	51472	51472					-0.00338578247942678
TEAFLADAKW	10	Unmodified	_TEAFLADAKW_					0	0	0		ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;ZMYND8|p.E1080Nfs*4|1|0.25|ENSG00000101040|chr20:47221432-47221433|TC/-|frameshift_variant;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	576.6903076171875	2	576.290214	1150.56587	-0.047419	-2.7327E-05	-0.12113	-6.9803E-05	-0.16854	-9.713E-05	576.2902410483521	84.822	1.3734	85.558	84.916	86.29	0.73601					53	26	4	0	0	0	0.0089867	2	32225	32225;32349		107.56	76.927	1	11361000			52726	2246	38346	38651	51473;51474	51473					-0.00338578247942678
TEAGRLPLHGY	11	Unmodified	_TEAGRLPLHGY_					0	0	0		ENST00000568636.5_1_16:720997-722003:+|nuORF;ENST00000569358.5_1_16:720997-722561:+|nuORF;ENST00000602564.5_1_16:720997-722561:+|nuORF;ENSG00000140983|ENST00000315082|RHOT2	ENST00000568636.5_1_16:720997-722003:+|nuORF	ENST00000568636.5_1_16:720997-722003:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	405.2925109863281	3	405.21565	1212.62512	-0.31272	-0.00012672	-0.1701	-6.8928E-05	-0.48282	-0.00019565	405.2155494620877	33.303	0.40642	34.055	33.942	34.348	0.75225					13	7	3	0	0	0	0.99411	1	11890	11890		9.7643	1.3199	1	1302200			52727	5200	38347	38652	51475	51475					0.027313177662790622
TEAIKEELLYF	11	Unmodified	_TEAIKEELLYF_					0	0	0		ENSG00000165983|ENST00000535784|PTER;nc|ENSG00000165983|Q96BW5-2|PTER	ENSG00000165983|ENST00000535784|PTER	ENSG00000165983|ENST00000535784|PTER	MSMS	A375_MHC_IP_R2	2	452.6379699707031	3	452.574621	1354.70203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.277	1	40.051	39.551	40.551	0.77451								0	0	0	0.16223	1	14495	14495		3.5927	0	1				52728	7013	38348	38653	51476	51476					0.03887071472104253
TEAITLQTLF	10	Unmodified	_TEAITLQTLF_					0	0	0		ENST00000299237.2_1_16:58031894-58032311:-|nuORF	ENST00000299237.2_1_16:58031894-58032311:-|nuORF	ENST00000299237.2_1_16:58031894-58032311:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	379.9450378417969	3	379.544773	1135.61249	0.30768	0.00011678	0.41846	0.00015882	0.72614	0.0002756	379.5447861886374	60.941	0.4569	60.941	60.77	61.227	0					20	8	3	0	0	0	0.60556	1	21953	21953		17.443	7.1274	1	3727000			52729	10526	38349	38654	51477	51477					0.05010861583377846
TEAITLQTLF	10	Unmodified	_TEAITLQTLF_					0	0	0		ENST00000299237.2_1_16:58031894-58032311:-|nuORF	ENST00000299237.2_1_16:58031894-58032311:-|nuORF	ENST00000299237.2_1_16:58031894-58032311:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	379.544773	1135.61249	-0.279	-0.00010589	0.58764	0.00022304	0.30864	0.00011714	379.54488317435477	60.037	0.45542	60.784	60.553	61.008	0.74714	-0.078815	9.4359E-05	NaN	17.443	21	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4257700			52730	10526	38349	38654							0.05010861583377846
TEALPVKLI	9	Unmodified	_TEALPVKLI_					0	0	0		RRM2|p.M315I|1|0.55|ENSG00000171848|chr2:10129082-10129082|G/A|missense_variant;ENST00000426279.1_1_X:44168653-44169127:-|nuORF;ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2	RRM2|p.M315I|1|0.55|ENSG00000171848|chr2:10129082-10129082|G/A|missense_variant	RRM2|p.M315I|1|0.55|ENSG00000171848|chr2:10129082-10129082|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	492.7097473144531	2	492.310418	982.606283	-0.41801	-0.00020579	-0.20404	-0.00010045	-0.62205	-0.00030624	492.3102528104756	87.211	0.60953	87.211	86.933	87.542	0					29	11	3	0	0	0	0.046478	1	31978	31978		82.529	26.352	1	10689000			52731	7649	38350	38655	51478	51478					0.11428388142530821
TEALPVKLI	9	Unmodified	_TEALPVKLI_					0	0	0		RRM2|p.M315I|1|0.55|ENSG00000171848|chr2:10129082-10129082|G/A|missense_variant;ENST00000426279.1_1_X:44168653-44169127:-|nuORF;ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2	RRM2|p.M315I|1|0.55|ENSG00000171848|chr2:10129082-10129082|G/A|missense_variant	RRM2|p.M315I|1|0.55|ENSG00000171848|chr2:10129082-10129082|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	492.7101135253906	2	492.310418	982.606283	-0.36178	-0.00017811	-0.079193	-3.8988E-05	-0.44097	-0.00021709	492.31033629572863	86.29	1.1199	87.023	86.642	87.762	0.733					44	21	4	0	0	0	0.20451	1	32798	32798		49.554	16.769	1	12332000			52732	7649	38350	38655	51479	51479					0.11428388142530821
TEALQSKFFS	10	Unmodified	_TEALQSKFFS_					0	0	0		ENST00000519007.5_1_8:91013720-91041621:+|nuORF;nc|ENSG00000104325|Q16698-2|DECR1;ENSG00000104325|ENST00000220764|DECR1	ENST00000519007.5_1_8:91013720-91041621:+|nuORF	ENST00000519007.5_1_8:91013720-91041621:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	579.6947631835938	2	579.295496	1156.57644	-0.46214	-0.00026771	-0.69306	-0.00040149	-1.1552	-0.0006692	579.2947083902876	39.702	0.30363	39.702	39.541	39.845	0					9	5	2	0	0	0	0.53116	1	13637	13637		26.021	3.2844	1	2848500			52733	2499	38351	38656	51480	51480					0.004414044065242706
TEALQSKFFS	10	Unmodified	_TEALQSKFFS_					0	0	0		ENST00000519007.5_1_8:91013720-91041621:+|nuORF;nc|ENSG00000104325|Q16698-2|DECR1;ENSG00000104325|ENST00000220764|DECR1	ENST00000519007.5_1_8:91013720-91041621:+|nuORF	ENST00000519007.5_1_8:91013720-91041621:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	579.295496	1156.57644	-0.54803	-0.00031747	0.70751	0.00040986	0.15948	9.2388E-05	579.7970640461657	38.785	0.3072	39.56	39.351	39.658	0.77451	-0.070769	0.00058432	NaN	26.021	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2244900			52734	2499	38351	38656							0.004414044065242706
TEALRGSGVT	10	Unmodified	_TEALRGSGVT_					0	0	0		ENSG00000168502|ENST00000695636|MTCL1;nc|ENSG00000168502|Q9Y4B5-4|MTCL1;nc|ENSG00000168502|Q9Y4B5|MTCL1;nc|ENSG00000168502|Q9Y4B5-2|MTCL1;nc|ENSG00000168502|Q9Y4B5-3|MTCL1	ENSG00000168502|ENST00000695636|MTCL1	ENSG00000168502|ENST00000695636|MTCL1	MULTI-SECPEP	A375_MHC_IP_R1	1	496.16455078125	2	495.764363	989.514173	-0.16443	-8.152E-05	1.386	0.00068715	1.2216	0.00060563	495.7649903590981	71.942	0.70798	71.942	71.715	72.423	0					20	13	2	0	0	0	0.6774	1	26187	26187		27.629	0	1	1953800			52735	7312	38352	38657	51481	51481					0.018996780582028805
TEALRGSGVT	10	Unmodified	_TEALRGSGVT_					0	0	0		ENSG00000168502|ENST00000695636|MTCL1;nc|ENSG00000168502|Q9Y4B5-4|MTCL1;nc|ENSG00000168502|Q9Y4B5|MTCL1;nc|ENSG00000168502|Q9Y4B5-2|MTCL1;nc|ENSG00000168502|Q9Y4B5-3|MTCL1	ENSG00000168502|ENST00000695636|MTCL1	ENSG00000168502|ENST00000695636|MTCL1	MULTI-SECPEP	A375_MHC_IP_R2	2	496.2024230957031	2	495.764363	989.514173	-0.69905	-0.00034657	1.2159	0.00060282	0.51688	0.00025625	495.76492448855436	71.302	0.81115	72.036	71.756	72.567	0.73421					19	15	2	0	0	0	0.60238	1	26965	26965		26.268	0	1	1785200			52736	7312	38352	38657	51482	51482					0.018996780582028805
TEALTPHIW	9	Unmodified	_TEALTPHIW_					0	0	0		ENST00000460302.1_1_6:31602018-31602409:+|nuORF;nc|ENSG00000204469|P48634-4|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A	ENST00000460302.1_1_6:31602018-31602409:+|nuORF	ENST00000460302.1_1_6:31602018-31602409:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	534.6795043945312	2	534.279649	1066.54475	-0.47968	-0.00025628	-0.099711	-5.3274E-05	-0.57939	-0.00030956	534.2794936623756	78.718	0.65624	78.718	78.454	79.111	0					16	12	2	0	0	0	0.077132	1	28740	28740		54.774	35.517	1	2015800			52737	9447	38353	38658	51483	51483					0.014134564432424668
TEALTSAKRY	10	Unmodified	_TEALTSAKRY_					0	0	0		ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN;CON__Q3SX14;ENST00000373806.1_2_9:124089055-124094878:+|nuORF	ENSG00000148180|ENST00000432226|GSN	ENSG00000148180|ENST00000432226|GSN	MULTI-SECPEP	A375_MHC_IP_R1	1	380.9400634765625	3	380.540022	1138.59824	0.39122	0.00014887	-0.16639	-6.3319E-05	0.22482	8.5554E-05	380.5399503483316	20.155	0.30415	20.155	20.03	20.334	0					7	5	2	0	0	0	0.90611	1	5163	5163		15.538	4.0206	1	1438700		+	52738	5721	38354	38659	51484	51484					0.034482091550898986
TEANRRSTDA	10	Unmodified	_TEANRRSTDA_					0	0	0			REV__nc|ENSG00000158941|Q8N163-2|CCAR2	REV__nc|ENSG00000158941|Q8N163-2|CCAR2	MULTI-SECPEP	A375_MHC_IP_R2	2	373.9448547363281	3	374.182898	1119.52686	0.02189	8.1908E-06	1.9789	0.00074049	2.0008	0.00074868	374.5188541060134	20.708	0.55821	21.318	21.008	21.566	0.61029					19	10	3	0	0	0	0.92957	1	6524	6524		3.3196	0.24738	1	764890	+		52739	20095	38355	38660	51485	51485					-0.028119105495534313
TEAPGEYFF	9	Unmodified	_TEAPGEYFF_					0	0	0		ENST00000481274.1_1_3:49062288-49062724:-|nuORF;ENST00000484872.1_1_3:49061926-49062670:-|nuORF;ENSG00000178035|ENST00000326739|IMPDH2;ENST00000466147.5_1_3:49062090-49062580:-|nuORF;ENST00000469328.5_1_7:128033063-128040541:-|nuORF;ENST00000484496.5_1_7:128032984-128040541:-|nuORF;nc|ENSG00000106348|P20839-2|IMPDH1;nc|ENSG00000106348|P20839-4|IMPDH1;nc|ENSG00000106348|P20839|IMPDH1;nc|ENSG00000106348|P20839-3|IMPDH1;nc|ENSG00000106348|P20839-7|IMPDH1;nc|ENSG00000106348|P20839-5|IMPDH1;ENSG00000106348|ENST00000338791|IMPDH1	ENST00000481274.1_1_3:49062288-49062724:-|nuORF	ENST00000481274.1_1_3:49062288-49062724:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	531.1340942382812	2	530.73474	1059.45493	-0.34548	-0.00018336	0.11292	5.9931E-05	-0.23256	-0.00012343	530.7347018267468	107.72	0.9678	107.72	107.29	108.26	0					46	18	4	0	0	0	0.012712	1	39461	39461		92.822	54.671	1	9758400			52740	8127	38356	38661	51486	51486					-0.07242217955990782
TEAPGEYFF	9	Unmodified	_TEAPGEYFF_					0	0	0		ENST00000481274.1_1_3:49062288-49062724:-|nuORF;ENST00000484872.1_1_3:49061926-49062670:-|nuORF;ENSG00000178035|ENST00000326739|IMPDH2;ENST00000466147.5_1_3:49062090-49062580:-|nuORF;ENST00000469328.5_1_7:128033063-128040541:-|nuORF;ENST00000484496.5_1_7:128032984-128040541:-|nuORF;nc|ENSG00000106348|P20839-2|IMPDH1;nc|ENSG00000106348|P20839-4|IMPDH1;nc|ENSG00000106348|P20839|IMPDH1;nc|ENSG00000106348|P20839-3|IMPDH1;nc|ENSG00000106348|P20839-7|IMPDH1;nc|ENSG00000106348|P20839-5|IMPDH1;ENSG00000106348|ENST00000338791|IMPDH1	ENST00000481274.1_1_3:49062288-49062724:-|nuORF	ENST00000481274.1_1_3:49062288-49062724:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	531.1341552734375	2	530.73474	1059.45493	-0.70193	-0.00037254	-0.27282	-0.0001448	-0.97475	-0.00051733	530.7345501417727	106.89	0.96419	107.65	107.24	108.21	0.75977					45	18	3	0	0	0	0.012712	1	40348	40348		92.822	54.848	1	9420800			52741	8127	38356	38661	51487	51487					-0.07242217955990782
TEAPGGYKF	9	Unmodified	_TEAPGGYKF_					0	0	0		ENSG00000167699|ENST00000301329|GLOD4;nc|ENSG00000167699|Q9HC38|GLOD4;nc|ENSG00000167699|Q9HC38-3|GLOD4;ENST00000576239.5_1_17:674543-685513:-|nuORF	ENSG00000167699|ENST00000301329|GLOD4	ENSG00000167699|ENST00000301329|GLOD4	MULTI-MSMS	A375_MHC_IP_R1	1	485.1739501953125	2	485.23745	968.460347	-0.54035	-0.0002622	0.30922	0.00015004	-0.23113	-0.00011215	485.2375441853894	41.667	1.0699	41.667	41.215	42.285	0					50	20	4	0	0	0	0.04447	1	14349	14349		66.457	16.524	1	43188000			52742	7212	38357	38662	51488	51488					-0.025144943735199377
TEAPGGYKF	9	Unmodified	_TEAPGGYKF_					0	0	0		ENSG00000167699|ENST00000301329|GLOD4;nc|ENSG00000167699|Q9HC38|GLOD4;nc|ENSG00000167699|Q9HC38-3|GLOD4;ENST00000576239.5_1_17:674543-685513:-|nuORF	ENSG00000167699|ENST00000301329|GLOD4	ENSG00000167699|ENST00000301329|GLOD4	MULTI-MSMS	A375_MHC_IP_R2	2	485.6372375488281	2	485.23745	968.460347	-0.83511	-0.00040523	0.1405	6.8174E-05	-0.69462	-0.00033705	485.2374418546227	40.942	0.91419	41.716	41.386	42.3	0.77451					50	17	4	0	0	0	0.02559	2	15125	15125;15412		78.728	20.049	1	47475000			52743	7212	38357	38662	51489;51490	51489					-0.025144943735199377
TEAPLPLH	8	Unmodified	_TEAPLPLH_					0	0	0			REV__ENST00000372583.5_1_1:42050769-42050838:-|nuORF	REV__ENST00000372583.5_1_1:42050769-42050838:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	439.2847900390625	2	439.242535	876.470518	0.018205	7.9966E-06	3.0535	0.0013412	3.0717	0.0013492	439.24252078895813	45.918	0.40657	45.918	45.636	46.043	0					15	7	3	0	0	0	0.7338	1	16025	16025		24.674	2.9272	1	1360800	+		52744	24069	38358	38663	51491	51491					0.027341133517211347
TEAPPVPVGC	10	Unmodified	_TEAPPVPVGC_					0	0	0		ENST00000491330.1_1_8:22442376-22443056:+|nuORF	ENST00000491330.1_1_8:22442376-22443056:+|nuORF	ENST00000491330.1_1_8:22442376-22443056:+|nuORF	MSMS	A375_MHC_IP_R1	1	485.1452941894531	2	485.239135	968.463718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.381	1	42.381	41.881	42.881	0								0	0	0	0.14862	1	14686	14686		20.454	2.3186	1				52745	12659	38359	38664	51492	51492					-0.02177567591161278
TEAPSGSGTVL	11	Unmodified	_TEAPSGSGTVL_					0	0	0		ENST00000443642.1_1_1:155288152-155293872:-|nuORF	ENST00000443642.1_1_1:155288152-155293872:-|nuORF	ENST00000443642.1_1_1:155288152-155293872:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	510.1559143066406	2	509.756204	1017.49785	-0.026928	-1.3727E-05	-0.27181	-0.00013855	-0.29873	-0.00015228	509.7560195883327	48.565	0.50544	48.565	48.325	48.831	0					14	9	2	0	0	0	0.78118	1	17148	17148		32.786	8.9959	1	2440000			52746	12007	38360	38665	51493	51493					-0.010194478985567912
TEAPTPQTPVP	11	Unmodified	_TEAPTPQTPVP_					0	0	0			REV__ENST00000391694.4_1_19:58989172-58992090:+|nuORF	REV__ENST00000391694.4_1_19:58989172-58992090:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	379.92401123046875	3	379.864394	1136.57135	-0.35959	-0.00013659	-0.11015	-4.1843E-05	-0.46974	-0.00017844	379.86424951650434	26.223	0.45757	26.882	26.703	27.161	0.65992					10	8	2	0	0	0	0.72877	1	8788	8788		5.0475	0	1	1593500	+		52747	16814	38361	38666	51494	51494					0.008531005438726424
TEAQKARWL	9	Unmodified	_TEAQKARWL_					0	0	0		nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF;ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF	nc|ENSG00000111271|Q6JQN1-2|ACAD10	nc|ENSG00000111271|Q6JQN1-2|ACAD10	MULTI-SECPEP	A375_MHC_IP_R1	1	368.9643249511719	3	368.204974	1101.59309	-0.046063	-1.6961E-05	0.19222	7.0777E-05	0.14616	5.3816E-05	368.20498783313053	30.494	0.70748	30.494	30.301	31.009	0					22	13	2	0	0	0	0.76827	1	9861	9861		4.1895	3.413	1	3075300			52748	2980	38362	38667	51495	51495					0.046359500831158584
TEAQSEDEMT	10	Unmodified	_TEAQSEDEMT_					0	0	0		ENSG00000204946|ENST00000434415|ZNF783	ENSG00000204946|ENST00000434415|ZNF783	ENSG00000204946|ENST00000434415|ZNF783	MULTI-SECPEP	A375_MHC_IP_R2	2	571.120849609375	2	570.721701	1139.42885	-0.51197	-0.00029219	0.46559	0.00026572	-0.04638	-2.647E-05	570.7218066842601	50.047	0.45788	50.801	50.65	51.108	0.75406					14	8	2	0	0	0	0.91556	1	18847	18847		10.074	0	1	1039500			52749	9487	38363	38668	51496	51496					-0.1352889998045157
TEAQTLFDTL	10	Unmodified	_TEAQTLFDTL_					0	0	0		nc|ENSG00000183914|Q9P225-2|DNAH2;ENSG00000183914|ENST00000572933|DNAH2	nc|ENSG00000183914|Q9P225-2|DNAH2	nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-SECPEP	A375_MHC_IP_R1	1	570.1375732421875	2	569.784961	1137.55537	-0.24817	-0.00014141	-0.40695	-0.00023188	-0.65513	-0.00037328	569.7845554277612	62.09	0.46088	62.09	61.788	62.249	0					17	8	3	0	0	0	0.47386	1	22387	22387		39.95	0	1	2860200			52750	8541	38364	38669	51497	51497					-0.00790605692986901
TEAQVTQEL	9	Unmodified	_TEAQVTQEL_					0	0	0		ENST00000469480.1_1_11:62342568-62343792:-|nuORF;ENSG00000149016|ENST00000476907|TUT1	ENST00000469480.1_1_11:62342568-62343792:-|nuORF	ENST00000469480.1_1_11:62342568-62343792:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	510.155517578125	2	509.756204	1017.49785	-0.62161	-0.00031687	0.065323	3.3299E-05	-0.55628	-0.00028357	509.7560772169887	47.823	0.50631	48.585	48.326	48.833	0.76128					14	9	2	0	0	0	0.54812	1	17981	17981		19.362	0	1	2748800			52751	5777	38365	38670	51498	51498					-0.010194478985567912
TEARPLSRW	9	Unmodified	_TEARPLSRW_					0	0	0			REV__ENST00000522301.5_3_17:4853490-4853673:+|nuORF	REV__ENST00000522301.5_3_17:4853490-4853673:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	372.9418640136719	3	372.536724	1114.58834	0.33708	0.00012557	-0.2987	-0.00011128	0.038371	1.4294E-05	372.53659362137296	60.165	0.30559	60.165	60.057	60.363	0					9	5	2	0	0	0	0.80005	1	21656	21656		0.23584	0	1	772720	+		52752	25729	38366	38671	51499	51499					0.03563065940352317
TEARPLSRW	9	Unmodified	_TEARPLSRW_					0	0	0			REV__ENST00000522301.5_3_17:4853490-4853673:+|nuORF	REV__ENST00000522301.5_3_17:4853490-4853673:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	372.536724	1114.58834	0.03921	1.4607E-05	-1.0798	-0.00040228	-1.0406	-0.00038767	372.8705419013333	59.378	0.45396	60.126	59.845	60.299	0.74714	-0.019601	-0.00032973	NaN	0.23584	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	850960	+		52753	25729	38366	38671							0.03563065940352317
TEARYRREG	9	Unmodified	_TEARYRREG_					0	0	0		ENST00000553636.1_1_14:99959014-99959269:+|nuORF;ENST00000556641.5_1_14:99959014-99967243:+|nuORF;ENST00000557165.5_1_14:99959014-99968584:+|nuORF;nc|ENSG00000090061|O75909-2|CCNK;nc|ENSG00000090061|O75909-1|CCNK;ENSG00000090061|ENST00000389879|CCNK;nc|ENSG00000090061|O75909-4|CCNK	ENST00000553636.1_1_14:99959014-99959269:+|nuORF	ENST00000553636.1_1_14:99959014-99959269:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	380.6109924316406	3	379.863499	1136.56867	-0.35959	-0.00013659	2.2463	0.00085327	1.8867	0.00071668	379.86424951650434	26.223	0.45757	26.882	26.703	27.161	0.65992					10	8	2	0	0	0	0.73363	1	8884	8884		7.1017	2.5729	1	1593500			52754	1944	38367	38672	51500	51500					0.005846899296102492
TEASFQKVI	9	Unmodified	_TEASFQKVI_					0	0	0		ENSG00000185947|ENST00000300870|ZNF267;ENST00000575471.2_1_16:31925765-31927799:+|nuORF	ENSG00000185947|ENST00000300870|ZNF267	ENSG00000185947|ENST00000300870|ZNF267	MULTI-SECPEP	A375_MHC_IP_R1	1	511.638671875	2	511.779482	1021.54441	-0.45984	-0.00023534	-0.27846	-0.00014251	-0.73829	-0.00037784	511.7795623817266	50.655	0.50659	50.655	50.459	50.966	0					15	9	2	0	0	0	0.34746	1	17964	17964		19.362	4.9566	1	1200800			52755	8709	38368	38673	51501	51501					0.034500367233818
TEASGTGNMKF	11	Oxidation (M)	_TEASGTGNM(Oxidation (M))KF_		TEASGTGNM(1)KF		TEASGTGNM(120)KF	0	0	1		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENSG00000068976|ENST00000164139|PYGM;nc|ENSG00000068976|P11217-2|PYGM;ENST00000532107.2_1_14:51374946-51378571:-|nuORF;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R1	1	580.158447265625	2	579.75842	1157.50229	0.050014	2.8996E-05	-0.19246	-0.00011158	-0.14245	-8.2586E-05	579.7583093657696	22.716	1.1656	22.716	22.368	23.533	0					40	22	2	0	0	0	0.00028898	2	6067	6067;6320		124.95	39.312	1	9724500			52756	2241;2187	38369	38674	51502;51503	51502		86			-0.07016306747300405
TEASGTGNMKF	11	Oxidation (M)	_TEASGTGNM(Oxidation (M))KF_		TEASGTGNM(1)KF		TEASGTGNM(82)KF	0	0	1		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENSG00000068976|ENST00000164139|PYGM;nc|ENSG00000068976|P11217-2|PYGM;ENST00000532107.2_1_14:51374946-51378571:-|nuORF;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	A375_MHC_IP_R2	2	580.1585083007812	2	579.75842	1157.50229	-0.61408	-0.00035602	-0.39691	-0.00023011	-1.011	-0.00058613	579.7583090279245	22.417	1.7312	23.036	22.541	24.272	0.61932					62	33	3	0	0	0	0.041527	1	7052	7052		81.915	32.361	1	6933300			52757	2241;2187	38369	38674	51504	51504		86			-0.07016306747300405
TEASGTGNMKF	11	Unmodified	_TEASGTGNMKF_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENSG00000068976|ENST00000164139|PYGM;nc|ENSG00000068976|P11217-2|PYGM;ENST00000532107.2_1_14:51374946-51378571:-|nuORF;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R2	2	572.1612548828125	2	571.760963	1141.50737	-0.36029	-0.000206	1.0787	0.00061679	0.71846	0.00041079	571.7615404869572	32.751	1.5781	33.488	32.755	34.333	0.73692					56	28	3	0	0	0	4.5543E-08	1	11697	11697		158.08	114.22	1	12801000			52758	2241;2187	38369	38675	51505	51505					-0.057720028846688365
TEASSFAVEF	10	Unmodified	_TEASSFAVEF_					0	0	0			REV__nc|ENSG00000183963|P53814-6|SMTN	REV__nc|ENSG00000183963|P53814-6|SMTN	MULTI-SECPEP	A375_MHC_IP_R2	2	543.6621704101562	2	544.250754	1086.48696	-0.71032	-0.00038659	1.3611	0.00074078	0.65079	0.00035419	544.2508587154047	90.159	0.66051	90.891	90.699	91.359	0.7318					20	12	3	0	0	0	0.78945	1	34384	34384		9.3831	0	1	1715300	+		52759	27402	38370	38676	51506	51506					-0.05282850272851647
TEASTKNIF	9	Unmodified	_TEASTKNIF_					0	0	0		ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3;ENST00000445194.2_1_20:29874377-29874470:-|nuORF;ENST00000584063.5_1_17:46048512-46051888:+|nuORF;ENST00000583182.5_1_17:46048501-46051888:+|nuORF	ENSG00000108465|ENST00000338399|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	MULTI-SECPEP	A375_MHC_IP_R2	2	506.1608581542969	2	505.761289	1009.50803	-1.2713	-0.00064295	0.081498	4.1219E-05	-1.1898	-0.00060173	505.7614946742398	37.182	0.40466	37.953	37.767	38.171	0.7709					17	7	3	0	0	0	0.048303	1	13617	13617		83.429	25.707	1	2550400			52760	2802	38371	38677	51507	51507					0.0036515982667424396
TEATEVSKKF	10	Unmodified	_TEATEVSKKF_					0	0	0		ENST00000603865.1_1_11:75507249-75507624:+|nuORF;ENST00000603363.5_1_11:75507249-75511550:+|nuORF;nc|ENSG00000062282|Q96PD7-2|DGAT2;ENSG00000062282|ENST00000228027|DGAT2	ENST00000603865.1_1_11:75507249-75507624:+|nuORF	ENST00000603865.1_1_11:75507249-75507624:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	380.2610168457031	3	380.536278	1138.587	0.089271	3.3971E-05	-1.2775	-0.00048613	-1.1882	-0.00045216	380.5355734173636	23.933	0.25426	23.933	23.787	24.042	0					7	4	2	0	0	0	0.70912	1	6637	6637		31.462	20.662	1	1128500			52761	1327	38372	38678	51508	51508					0.02325387060977846
TEATISFLKM	10	Unmodified	_TEATISFLKM_					0	0	0		ENST00000373001.3_1_1:39304950-39305250:-|nuORF	ENST00000373001.3_1_1:39304950-39305250:-|nuORF	ENST00000373001.3_1_1:39304950-39305250:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	570.2078247070312	2	570.8021	1139.58965	0.024608	1.4046E-05	-1.1503	-0.00065662	-1.1257	-0.00064257	570.8015478544947	48.248	0.25397	48.248	48.02	48.274	0					6	4	2	0	0	0	0.91556	1	16918	16918		6.2058	0.9089	1	1034200			52762	11219	38373	38679	51509	51509					0.025435191942506208
TEAVHGKLDE	10	Unmodified	_TEAVHGKLDE_					0	0	0			REV__ENST00000460613.5_1_3:188925173-188937392:+|nuORF	REV__ENST00000460613.5_1_3:188925173-188937392:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	550.7394409179688	2	549.774928	1097.5353	-0.40935	-0.00022505	-1.0409	-0.00057228	-1.4503	-0.00079733	549.7746343555098	51.92	0.76224	51.92	51.424	52.186	0					54	14	6	0	0	0	0.70012	1	18431	18431		12.241	0	1	10710000	+		52763	22064	38374	38680	51510	51510					-0.00956356632968891
TEAYIAQRF	9	Unmodified	_TEAYIAQRF_					0	0	0		nc|ENSG00000101974|Q8NB49-2|ATP11C;nc|ENSG00000101974|Q8NB49-3|ATP11C;nc|ENSG00000101974|Q8NB49-4|ATP11C;ENSG00000101974|ENST00000682941|ATP11C;nc|ENSG00000101974|Q8NB49|ATP11C	nc|ENSG00000101974|Q8NB49-2|ATP11C	nc|ENSG00000101974|Q8NB49-2|ATP11C	MULTI-SECPEP	A375_MHC_IP_R1	1	550.1738891601562	2	549.782556	1097.55056	-0.38214	-0.0002101	2.0823	0.0011448	1.7002	0.00093473	549.7829791064763	51.82	0.60998	51.82	51.475	52.085	0					25	11	4	0	0	0	0.24324	1	18422	18422		53.833	24.751	1	3072100			52764	2341	38375	38681	51511	51511					0.005685549548843483
TEAYIAQRF	9	Unmodified	_TEAYIAQRF_					0	0	0		nc|ENSG00000101974|Q8NB49-2|ATP11C;nc|ENSG00000101974|Q8NB49-3|ATP11C;nc|ENSG00000101974|Q8NB49-4|ATP11C;ENSG00000101974|ENST00000682941|ATP11C;nc|ENSG00000101974|Q8NB49|ATP11C	nc|ENSG00000101974|Q8NB49-2|ATP11C	nc|ENSG00000101974|Q8NB49-2|ATP11C	MULTI-SECPEP	A375_MHC_IP_R2	2	550.1739501953125	2	549.782556	1097.55056	-0.91743	-0.00050439	0.87126	0.000479	-0.046169	-2.5383E-05	549.7826887620135	50.566	1.0621	51.321	50.804	51.866	0.75406					34	20	2	0	0	0	0.56537	1	19183	19183		29.082	21.171	1	1444600			52765	2341	38375	38681	51512	51512					0.005685549548843483
TECAMESGCC	10	Unmodified	_TECAMESGCC_					0	0	0			REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	MSMS	A375_MHC_IP_R1	1	517.1819458007812	2	517.158313	1032.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.026	1	36.026	35.526	36.526	0								0	0	0	0.15591	1	12024	12024		1.6526	0	1		+		52766	19190	38376	38682	51513	51513					-0.21278564002432176
TECAMESGCC	10	Unmodified	_TECAMESGCC_					0	0	0			REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	MSMS	A375_MHC_IP_R1	1	517.1588134765625	2	517.158313	1032.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.347	1	36.347	35.847	36.847	0								0	0	0	0.15591	1	12160	12160		1.6526	0	1		+		52767	19190	38376	38682	51514	51514					-0.21278564002432176
TECAMESGCC	10	Unmodified	_TECAMESGCC_					0	0	0			REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	MSMS	A375_MHC_IP_R1	1	517.1749267578125	2	517.158313	1032.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.29	1	44.29	43.79	44.79	0								0	0	0	0.1552	1	15446	15446		3.9444	3.1508	1		+		52768	19190	38376	38682	51515	51515					-0.21278564002432176
TECAMESGCC	10	Unmodified	_TECAMESGCC_					0	0	0			REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	MSMS	A375_MHC_IP_R1	1	517.1956787109375	2	517.158313	1032.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.687	1	44.687	44.187	45.187	0								0	0	0	0.15591	1	15603	15603		1.6526	0.85899	1		+		52769	19190	38376	38682	51516	51516					-0.21278564002432176
TECAMESGCC	10	Unmodified	_TECAMESGCC_					0	0	0			REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	MSMS	A375_MHC_IP_R1	1	517.153076171875	2	517.158313	1032.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.682	1	50.682	50.182	51.182	0								0	0	0	0.15591	1	17965	17965		1.6526	0.85899	1		+		52770	19190	38376	38682	51517	51517					-0.21278564002432176
TECAMESGCC	10	Unmodified	_TECAMESGCC_					0	0	0			REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	MSMS	A375_MHC_IP_R1	1	517.1715087890625	2	517.158313	1032.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.683	1	52.683	52.183	53.183	0								0	0	0	0.15591	1	18749	18749		1.6526	0.85899	1		+		52771	19190	38376	38682	51518	51518					-0.21278564002432176
TECAMESGCC	10	Unmodified	_TECAMESGCC_					0	0	0			REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	MSMS	A375_MHC_IP_R1	1	517.1837768554688	2	517.158313	1032.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.55	1	130.55	130.05	131.05	0								0	0	0	0.1552	1	50259	50259		3.9444	2.4625	1		+		52772	19190	38376	38682	51519	51519					-0.21278564002432176
TECAMESGCC	10	Unmodified	_TECAMESGCC_					0	0	0			REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	MSMS	A375_MHC_IP_R2	2	517.181884765625	2	517.158313	1032.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.253	1	36.017	35.517	36.517	0.76338								0	0	0	0.15591	1	12773	12773		1.6526	0	1		+		52773	19190	38376	38682	51520	51520					-0.21278564002432176
TECAMESGCC	10	Unmodified	_TECAMESGCC_					0	0	0			REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	MSMS	A375_MHC_IP_R2	2	517.1583862304688	2	517.158313	1032.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.504	1	36.267	35.767	36.767	0.76338								0	0	0	0.15591	1	12877	12877		1.6526	0	1		+		52774	19190	38376	38682	51521	51521					-0.21278564002432176
TECAMESGCC	10	Unmodified	_TECAMESGCC_					0	0	0			REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	MSMS	A375_MHC_IP_R2	2	517.19482421875	2	517.158313	1032.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.716	1	44.485	43.985	44.985	0.7691								0	0	0	0.1552	1	16294	16294		3.9444	3.1508	1		+		52775	19190	38376	38682	51522	51522					-0.21278564002432176
TECAMESGCC	10	Unmodified	_TECAMESGCC_					0	0	0			REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	MSMS	A375_MHC_IP_R2	2	517.1759033203125	2	517.158313	1032.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.853	1	44.622	44.122	45.122	0.7691								0	0	0	0.1552	1	16351	16351		3.9444	3.1508	1		+		52776	19190	38376	38682	51523	51523					-0.21278564002432176
TECAMESGCC	10	Unmodified	_TECAMESGCC_					0	0	0			REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	MSMS	A375_MHC_IP_R2	2	517.1529541015625	2	517.158313	1032.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.854	1	50.608	50.108	51.108	0.75406								0	0	0	0.15591	1	18738	18738		1.6526	0.85899	1		+		52777	19190	38376	38682	51524	51524					-0.21278564002432176
TECAMESGCC	10	Unmodified	_TECAMESGCC_					0	0	0			REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	MSMS	A375_MHC_IP_R2	2	517.1708984375	2	517.158313	1032.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.861	1	52.613	52.113	53.113	0.75225								0	0	0	0.15591	1	19529	19529		1.6526	0.85899	1		+		52778	19190	38376	38682	51525	51525					-0.21278564002432176
TECAMESGCC	10	Unmodified	_TECAMESGCC_					0	0	0			REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	MSMS	A375_MHC_IP_R2	2	517.1836547851562	2	517.158313	1032.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.33	1	130.55	130.05	131.05	0.2142								0	0	0	0.1552	1	51226	51226		3.9444	2.4625	1		+		52779	19190	38376	38682	51526	51526					-0.21278564002432176
TECEERSATIS	11	Unmodified	_TECEERSATIS_					0	0	0		CENPE|p.F2317C|1|0.16|ENSG00000138778|chr4:103123064-103123064|A/C|missense_variant	CENPE|p.F2317C|1|0.16|ENSG00000138778|chr4:103123064-103123064|A/C|missense_variant	CENPE|p.F2317C|1|0.16|ENSG00000138778|chr4:103123064-103123064|A/C|missense_variant	MSMS	A375_MHC_IP_R2	2	409.1393737792969	3	409.183687	1224.52923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.79	1	142.82	142.32	143.32	0.030731								0	0	0	0.16179	1	55819	55819		4.7159	1.1289	1				52780	360	38377	38683	51527	51527					-0.07405242926779465
TECFREVKE	9	Unmodified	_TECFREVKE_					0	0	0			REV__tr|U7T2A5|U7T2A5_FUSNUDephospho-CoAkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaEPE=3SV=1	REV__tr|U7T2A5|U7T2A5_FUSNUDephospho-CoAkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaEPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	570.7293090820312	2	570.771331	1139.52811	-0.59386	-0.00033896	-0.30919	-0.00017648	-0.90305	-0.00051543	570.7712675040308	60.538	1.319	61.283	60.903	62.223	0.74503					55	25	5	0	0	0	0.4867	1	23177	23177		20.454	2.3073	1	86358000	+		52781	28731	38378	38684	51528	51528					-0.036074125050163275
TECKFRKEG	9	Unmodified	_TECKFRKEG_					0	0	0			REV__nc|ENSG00000131115|Q86WZ6-2|ZNF227	REV__nc|ENSG00000131115|Q86WZ6-2|ZNF227	MSMS	A375_MHC_IP_R1	1	366.4360656738281	3	366.518453	1096.53353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.929	1	26.929	26.429	27.429	0								0	0	0	0.15486	1	8095	8095		4.897	0.36815	1		+		52782	18590	38379	38685	51529	51529					-0.01087688922552843
TECMEAQNMN	10	Unmodified	_TECMEAQNMN_					0	0	0		nc|ENSG00000150712|Q9C0I1-2|MTMR12;ENSG00000150712|ENST00000382142|MTMR12;nc|ENSG00000150712|Q9C0I1-3|MTMR12;MTMR12|p.V387A|1|0.33|ENSG00000150712|chr5:32242068-32242068|A/G|missense_variant	nc|ENSG00000150712|Q9C0I1-2|MTMR12	nc|ENSG00000150712|Q9C0I1-2|MTMR12	MULTI-SECPEP	A375_MHC_IP_R1	1	586.11376953125	2	585.714841	1169.41513	-0.26454	-0.00015495	-0.43754	-0.00025628	-0.70209	-0.00041122	585.7144206885497	50.653	0.60941	50.653	50.408	51.017	0					24	11	3	0	0	0	0.93194	1	17936	17936		2.9952	0	1	4623200			52783	5858	38380	38686	51530	51530					-0.1628017228488261
TECSLTFLSV	10	Unmodified	_TECSLTFLSV_					0	0	0		ENSG00000124587|ENST00000304611|PEX6;nc|ENSG00000124587|Q13608-3|PEX6	ENSG00000124587|ENST00000304611|PEX6	ENSG00000124587|ENST00000304611|PEX6	MULTI-SECPEP	A375_MHC_IP_R2	2	549.648193359375	2	550.270632	1098.52671	-0.62308	-0.00034286	0.5825	0.00032053	-0.040581	-2.2331E-05	550.2706697747117	43.471	0.4039	44.244	44.079	44.483	0.7724					10	7	2	0	0	0	0.87163	1	16158	16158		9.3831	0	1	1411800			52784	3917	38381	38687	51531	51531					-0.018610465937854315
TECSWDHL	8	Unmodified	_TECSWDHL_					0	0	0		nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN;ATRN|p.Y225Vfs*8|1|0.34|ENSG00000088812|chr20:3545825-3545826|-/G|frameshift_variant	nc|ENSG00000088812|O75882-3|ATRN	nc|ENSG00000088812|O75882-3|ATRN	MSMS	A375_MHC_IP_R1	1	495.6518859863281	2	495.702917	989.391281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.399	1	85.399	84.899	85.899	0								0	0	0	0.16876	1	31297	31297		5.7604	0.52976	1				52785	1897	38382	38688	51532	51532					-0.1038390166473846
TEDDDEDDD	9	Unmodified	_TEDDDEDDD_					0	0	0		ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;nc|ENSG00000118729|O14958-2|CASQ2;ENSG00000118729|ENST00000261448|CASQ2;nc|ENSG00000141556|Q9BTW9-5|TBCD	ENSG00000141556|ENST00000355528|TBCD	ENSG00000141556|ENST00000355528|TBCD	MULTI-SECPEP	A375_MHC_IP_R2	2	357.1884460449219	3	356.775639	1067.30509	-0.47642	-0.00016997	-0.30157	-0.00010759	-0.77798	-0.00027757	356.7744272127534	18.034	0.13229	18.637	18.553	18.685	0.60308					12	10	2	0	0	0	0.81896	1	5319	5319		0	0	1	151910			52786	5254	38383	38689	51533	51533					-0.22587279547087746
TEDDFNDWC	9	Unmodified	_TEDDFNDWC_					0	0	0		ENST00000475693.1_1_2:242607884-242611676:+|nuORF;ENST00000460211.5_1_2:242607386-242610957:+|nuORF;nc|ENSG00000168397|Q9Y4P1-4|ATG4B;ENST00000482507.5_1_2:242592964-242610957:+|nuORF;nc|ENSG00000168397|Q9Y4P1-6|ATG4B;ENSG00000168397|ENST00000404914|ATG4B;nc|ENSG00000168397|Q9Y4P1-2|ATG4B	ENST00000475693.1_1_2:242607884-242611676:+|nuORF	ENST00000475693.1_1_2:242607884-242611676:+|nuORF	MSMS	A375_MHC_IP_R2	2	572.6690673828125	2	572.698029	1143.3815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.057	1	65.796	65.296	66.296	0.73811								0	0	0	0.15486	1	24667	24667		7.2892	0.56607	1				52787	7296	38384	38690	51534	51534					-0.18445134460762347
TEDDGRPIY	9	Unmodified	_TEDDGRPIY_					0	0	0		ENSG00000169189|ENST00000361439|NSMCE1;ENST00000569236.5_1_16:27236480-27252833:-|nuORF;ENST00000565070.5_1_16:27237776-27268891:-|nuORF	ENSG00000169189|ENST00000361439|NSMCE1	ENSG00000169189|ENST00000361439|NSMCE1	MULTI-SECPEP	A375_MHC_IP_R1	1	533.6454467773438	2	533.246003	1064.47745	-0.98009	-0.00052263	0.013696	7.3036E-06	-0.96639	-0.00051532	533.2460170691342	30.326	0.60392	30.326	30.049	30.653	0					18	11	2	0	0	0	0.036758	1	9591	9591		89.401	41.652	1	6440200			52788	7388	38385	38691	51535	51535					-0.05220618558360002
TEDDGRPIY	9	Unmodified	_TEDDGRPIY_					0	0	0		ENSG00000169189|ENST00000361439|NSMCE1;ENST00000569236.5_1_16:27236480-27252833:-|nuORF;ENST00000565070.5_1_16:27237776-27268891:-|nuORF	ENSG00000169189|ENST00000361439|NSMCE1	ENSG00000169189|ENST00000361439|NSMCE1	MULTI-MSMS	A375_MHC_IP_R2	2	533.6453857421875	2	533.246003	1064.47745	-1.2695	-0.00067696	0.40074	0.00021369	-0.86878	-0.00046327	533.2462012335548	29.661	0.55381	30.36	30.185	30.739	0.69872					16	10	2	0	0	0	0.10622	1	10380	10380		49.554	23.286	1	7098900			52789	7388	38385	38691	51536	51536					-0.05220618558360002
TEDDKAYAY	9	Unmodified	_TEDDKAYAY_					0	0	0		nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;ENST00000494570.1_1_9:6984307-6986720:+|nuORF;ENST00000438023.5_2_9:6982745-7014111:+|nuORF	nc|ENSG00000293552|Q9H3R0-3|KDM4C	nc|ENSG00000293552|Q9H3R0-3|KDM4C	MULTI-SECPEP	A375_MHC_IP_R1	1	538.6319580078125	2	538.232561	1074.45057	-1.0032	-0.00053996	-0.22514	-0.00012118	-1.2284	-0.00066114	538.2324026632097	26.549	0.50664	26.549	26.322	26.828	0					16	9	2	0	0	0	0.053555	1	7942	7942		80.676	34.976	1	6578800			52790	2723	38386	38692	51537	51537					-0.08367727169570571
TEDDKAYAY	9	Unmodified	_TEDDKAYAY_					0	0	0		nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;ENST00000494570.1_1_9:6984307-6986720:+|nuORF;ENST00000438023.5_2_9:6982745-7014111:+|nuORF	nc|ENSG00000293552|Q9H3R0-3|KDM4C	nc|ENSG00000293552|Q9H3R0-3|KDM4C	MULTI-SECPEP	A375_MHC_IP_R2	2	538.632080078125	2	538.232561	1074.45057	-1.292	-0.00069542	-0.038313	-2.0621E-05	-1.3304	-0.00071604	538.2326227817846	26.068	0.45755	26.728	26.5	26.957	0.65992					13	8	2	0	0	0	0.16595	1	8794	8794		53.404	22.767	1	4345600			52791	2723	38386	38692	51538	51538					-0.08367727169570571
TEDDKRRNYGG	11	Unmodified	_TEDDKRRNYGG_					0	0	0		ENSG00000235162|ENST00000443585|C12orf75	ENSG00000235162|ENST00000443585|C12orf75	ENSG00000235162|ENST00000443585|C12orf75	MULTI-SECPEP	A375_MHC_IP_R1	1	436.9384460449219	3	437.540973	1309.60109	-0.074254	-3.2489E-05	3.168	0.0013861	3.0937	0.0013536	437.5427108604504	20.257	0.20451	20.257	20.129	20.334	0					5	3	2	0	0	0	0.99625	1	5157	5157		4.7159	0.83959	1	897340			52792	9744	38387	38693	51539	51539					-0.04132567458032099
TEDEFKRLF	9	Unmodified	_TEDEFKRLF_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-SECPEP	A375_MHC_IP_R1	1	395.93658447265625	3	395.536389	1183.58734	-0.10877	-4.3022E-05	0.40336	0.00015954	0.29459	0.00011652	395.53652174419676	64.877	0.76264	64.877	64.546	65.309	0					26	14	2	0	0	0	0.13064	1	23432	23432		51.415	16.483	1	6612200			52793	3405	38388	38694	51540	51540					0.0028880678080440703
TEDEFKRLF	9	Unmodified	_TEDEFKRLF_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-SECPEP	A375_MHC_IP_R1	1	593.2006225585938	2	592.800946	1183.58734	-0.42472	-0.00025178	0.22982	0.00013624	-0.1949	-0.00011554	592.8010357202756	64.825	0.55845	64.825	64.597	65.156	0					19	10	2	0	0	0	0.070665	1	23491	23491		60.074	18.234	1	2629300			52794	3405	38388	38694	51541	51541					0.0028880678080440703
TEDEFKRLF	9	Unmodified	_TEDEFKRLF_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-SECPEP	A375_MHC_IP_R2	2	395.9366760253906	3	395.536389	1183.58734	-0.061872	-2.4473E-05	-0.00010197	-4.0332E-08	-0.061974	-2.4513E-05	395.5363600042128	64.014	0.81374	64.755	64.446	65.259	0.74022					28	15	2	0	0	0	0.012104	1	24250	24250		93.166	37.663	1	6939100			52795	3405	38388	38694	51542	51542					0.0028880678080440703
TEDEFKRLF	9	Unmodified	_TEDEFKRLF_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-SECPEP	A375_MHC_IP_R2	2	593.2010498046875	2	592.800946	1183.58734	-0.49065	-0.00029086	0.70645	0.00041878	0.2158	0.00012793	592.8012295215133	64.016	0.66136	64.756	64.547	65.208	0.74022					19	12	2	0	0	0	0.16764	1	24288	24288		43.772	9.3707	1	1748800			52796	3405	38388	38694	51543	51543					0.0028880678080440703
TEDELYEDY	9	Unmodified	_TEDELYEDY_					0	0	0			REV__tr|U7SPU9|U7SPU9_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01710PE=4SV=1	REV__tr|U7SPU9|U7SPU9_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01710PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	588.7322387695312	2	588.732591	1175.45063	-0.92784	-0.00054625	0.6991	0.00041158	-0.22874	-0.00013467	588.7332845528609	52.125	0.50862	52.878	52.626	53.134	0.75225					15	9	2	0	0	0	0.72507	1	19586	19586		4.756	0	1	2751000	+		52797	28365	38389	38695	51544	51544					-0.1300777196022409
TEDEPQVQKY	10	Unmodified	_TEDEPQVQKY_					0	0	0		ENST00000488504.5_1_22:50691832-50695243:-|nuORF;nc|ENSG00000188130|P53778-2|MAPK12;ENSG00000188130|ENST00000215659|MAPK12;ENST00000497036.5_1_22:50691832-50699551:-|nuORF;ENST00000482969.5_1_22:50693515-50695072:-|nuORF;ENST00000497738.1_1_22:50693515-50694479:-|nuORF	ENST00000488504.5_1_22:50691832-50695243:-|nuORF	ENST00000488504.5_1_22:50691832-50695243:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	618.6668701171875	2	618.790775	1235.567	-0.70721	-0.00043762	0.33966	0.00021018	-0.36756	-0.00022744	618.7903038532032	26.467	0.45524	26.467	26.221	26.677	0					12	8	3	0	0	0	0.043964	1	7871	7871		91.085	52.47	1	1471300			52798	8885	38390	38696	51545	51545					-0.041364086696376035
TEDEPQVQKY	10	Unmodified	_TEDEPQVQKY_					0	0	0		ENST00000488504.5_1_22:50691832-50695243:-|nuORF;nc|ENSG00000188130|P53778-2|MAPK12;ENSG00000188130|ENST00000215659|MAPK12;ENST00000497036.5_1_22:50691832-50699551:-|nuORF;ENST00000482969.5_1_22:50693515-50695072:-|nuORF;ENST00000497738.1_1_22:50693515-50694479:-|nuORF	ENST00000488504.5_1_22:50691832-50695243:-|nuORF	ENST00000488504.5_1_22:50691832-50695243:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	618.6668701171875	2	618.790775	1235.567	-1.1218	-0.00069414	0.30601	0.00018936	-0.81576	-0.00050478	618.7909804870768	26.011	0.35587	26.671	26.398	26.754	0.65992					9	6	2	0	0	0	0.021882	1	8699	8699		107.1	68.924	1	1289300			52799	8885	38390	38696	51546	51546					-0.041364086696376035
TEDEVLDIL	9	Unmodified	_TEDEVLDIL_					0	0	0		ENST00000565642.5_1_16:71777395-71799448:-|nuORF;ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	523.2001342773438	2	523.766237	1045.51792	-0.56291	-0.00029483	4.2902	0.0022471	3.7273	0.0019522	523.7664895931633	58.557	0.45837	58.557	58.278	58.736	0					13	8	2	0	0	0	0.55359	1	21102	21102		21.747	4.8044	1	1285500			52800	7107	38391	38697	51547	51547					-0.0030169695860422507
TEDFESSIW	9	Unmodified	_TEDFESSIW_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B	REV__ENSG00000168702|ENST00000389484|LRP1B	MULTI-MSMS	A375_MHC_IP_R1	1	558.1619262695312	2	557.240386	1112.46622	-0.47516	-0.00026478	-0.12637	-7.0419E-05	-0.60153	-0.0003352	557.2401575567941	47.44	0.86118	47.44	47.159	48.02	0					46	16	4	0	0	0	0.68216	1	16803	16803		8.5933	0.68312	1	14449000	+		52801	20879	38392	38698	51548	51548					-0.0855144065251352
TEDFESSIW	9	Unmodified	_TEDFESSIW_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B	REV__ENSG00000168702|ENST00000389484|LRP1B	MULTI-MSMS	A375_MHC_IP_R2	2	558.161865234375	2	557.240386	1112.46622	-0.57039	-0.00031784	-0.027349	-1.524E-05	-0.59774	-0.00033308	557.2403150988846	46.858	1.0174	47.619	47.258	48.275	0.76127					44	19	3	0	0	0	0.68216	1	17591	17591		8.5933	0.68312	1	12444000	+		52802	20879	38392	38698	51549	51549					-0.0855144065251352
TEDFFEER	8	Unmodified	_TEDFFEER_					0	0	0			REV__ENSG00000121879|ENST00000263967|PIK3CA	REV__ENSG00000121879|ENST00000263967|PIK3CA	MSMS	A375_MHC_IP_R1	1	536.6967163085938	2	536.732729	1071.4509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.275	1	52.275	51.775	52.775	0								0	0	0	0.16876	1	18583	18583		8.5933	0.68312	1		+		52803	18174	38393	38699	51550	51550					-0.08196307449702545
TEDGRLFMW	9	Unmodified	_TEDGRLFMW_					0	0	0		nc|ENSG00000156313|Q92834-4|RPGR;nc|ENSG00000156313|Q92834-2|RPGR;nc|ENSG00000156313|Q92834|RPGR;nc|ENSG00000156313|Q92834-3|RPGR;ENSG00000156313|ENST00000645032|RPGR;nc|ENSG00000156313|Q92834-5|RPGR;ENST00000470183.1_1_X:38176512-38178196:-|nuORF	nc|ENSG00000156313|Q92834-4|RPGR	nc|ENSG00000156313|Q92834-4|RPGR	MULTI-SECPEP	A375_MHC_IP_R2	2	578.1669311523438	2	577.768591	1153.52263	-0.024717	-1.4281E-05	-1.9011	-0.0010984	-1.9258	-0.0011127	577.7676883139267	100.72	0.41039	101.48	101.29	101.7	0.76278					12	7	2	0	0	0	0.61452	1	38207	38207		20.415	11.031	1	1040600			52804	14697	38394	38700	51551	51551					-0.04799091296831648
TEDIQTRQY	9	Unmodified	_TEDIQTRQY_					0	0	0		ENSG00000135250|ENST00000393651|SRPK2;nc|ENSG00000135250|P78362|SRPK2;ENST00000507292.1_1_6:35824956-35836900:-|nuORF;nc|ENSG00000096063|Q96SB4-4|SRPK1;ENSG00000096063|ENST00000373825|SRPK1;nc|ENSG00000096063|Q96SB4-3|SRPK1;nc|ENSG00000184343|Q9UPE1-2|SRPK3;nc|ENSG00000184343|Q9UPE1-3|SRPK3;nc|ENSG00000184343|Q9UPE1-4|SRPK3;ENSG00000184343|ENST00000370101|SRPK3	ENSG00000135250|ENST00000393651|SRPK2;nc|ENSG00000096063|Q96SB4-4|SRPK1;nc|ENSG00000184343|Q9UPE1-2|SRPK3	ENSG00000135250|ENST00000393651|SRPK2	MULTI-SECPEP	A375_MHC_IP_R1	1	577.6774291992188	2	577.277835	1152.54112	-0.14658	-8.4618E-05	-0.15331	-8.8503E-05	-0.29989	-0.00017312	577.277710455626	25.184	0.50851	25.184	25.002	25.511	0					24	9	3	0	0	0	6.1184E-09	1	7309	7309		211.85	101.3	1	33600000			52805	4660;2053;8571	38395	38701	51552	51552					-0.02905258121290899
TEDIQTRQY	9	Unmodified	_TEDIQTRQY_					0	0	0		ENSG00000135250|ENST00000393651|SRPK2;nc|ENSG00000135250|P78362|SRPK2;ENST00000507292.1_1_6:35824956-35836900:-|nuORF;nc|ENSG00000096063|Q96SB4-4|SRPK1;ENSG00000096063|ENST00000373825|SRPK1;nc|ENSG00000096063|Q96SB4-3|SRPK1;nc|ENSG00000184343|Q9UPE1-2|SRPK3;nc|ENSG00000184343|Q9UPE1-3|SRPK3;nc|ENSG00000184343|Q9UPE1-4|SRPK3;ENSG00000184343|ENST00000370101|SRPK3	ENSG00000135250|ENST00000393651|SRPK2;nc|ENSG00000096063|Q96SB4-4|SRPK1;nc|ENSG00000184343|Q9UPE1-2|SRPK3	ENSG00000135250|ENST00000393651|SRPK2	MULTI-SECPEP	A375_MHC_IP_R2	2	577.6769409179688	2	577.277835	1152.54112	-0.5545	-0.0003201	-0.31937	-0.00018437	-0.87387	-0.00050447	577.2776415072188	24.74	0.50676	25.383	25.212	25.719	0.64368					25	9	3	0	0	0	6.2112E-06	1	8158	8158		211.85	101.3	1	30826000			52806	4660;2053;8571	38395	38701	51553	51553					-0.02905258121290899
TEDKLKQCLE	10	Unmodified	_TEDKLKQCLE_					0	0	0		nc|ENSG00000164087|Q8NBT0-2|POC1A;nc|ENSG00000164087|Q8NBT0-3|POC1A;ENSG00000164087|ENST00000296484|POC1A	nc|ENSG00000164087|Q8NBT0-2|POC1A	nc|ENSG00000164087|Q8NBT0-2|POC1A	MULTI-SECPEP	A375_MHC_IP_R1	1	604.2042846679688	2	603.805371	1205.59619	-0.42665	-0.00025761	-1.1643	-0.00070298	-1.5909	-0.0009606	603.8047099309425	25.521	0.35711	25.521	25.357	25.714	0					8	6	2	0	0	0	0.90513	1	7510	7510		8.1555	0	1	3258400			52807	6776	38396	38702	51554	51554					0.0016141235498707829
TEDKLKRFLKK	11	Unmodified	_TEDKLKRFLKK_					0	0	0			REV__ENSG00000047617|ENST00000682330|ANO2	REV__ENSG00000047617|ENST00000682330|ANO2	MSMS	A375_MHC_IP_R1	1	703.4302368164062	2	703.429919	1404.84528	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.53	1	121.53	121.03	122.03	0								0	0	0	0.16232	1	45133	45133		6.6304	0	1		+		52808	16361	38397	38703	51555	51555					0.15905543373833098
TEDKNKLYD	9	Unmodified	_TEDKNKLYD_					0	0	0			REV__tr|U7T2T8|U7T2T8_FUSNUTwo-componentsystem,sensorhistidinekinaseYesMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00411PE=4SV=1	REV__tr|U7T2T8|U7T2T8_FUSNUTwo-componentsystem,sensorhistidinekinaseYesMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00411PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	563.674560546875	2	563.274761	1124.53497	-0.77132	-0.00043446	0.1844	0.00010387	-0.58692	-0.0003306	563.2749487530856	37.649	0.30642	38.424	38.279	38.585	0.77451					9	5	2	0	0	0	0.71341	1	13820	13820		18.146	11.423	1	2865800	+		52809	28758	38398	38704	51556	51556					-0.022317763528008072
TEDKNKLYD	9	Unmodified	_TEDKNKLYD_					0	0	0			REV__tr|U7T2T8|U7T2T8_FUSNUTwo-componentsystem,sensorhistidinekinaseYesMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00411PE=4SV=1	REV__tr|U7T2T8|U7T2T8_FUSNUTwo-componentsystem,sensorhistidinekinaseYesMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00411PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	563.274761	1124.53497	-0.72801	-0.00041007	0.46516	0.00026202	-0.26284	-0.00014805	563.274527021415	38.421	0.45899	38.421	38.067	38.526	0	-0.0011946	0.00027496	NaN	18.146	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2747000	+		52810	28758	38398	38704							-0.022317763528008072
TEDKWYWMGLR	11	Unmodified	_TEDKWYWMGLR_					0	0	0			REV__ENSG00000165807|ENST00000298705|PPP1R36	REV__ENSG00000165807|ENST00000298705|PPP1R36	MULTI-SECPEP	A375_MHC_IP_R1	1	496.30731201171875	3	495.571216	1483.69182	-0.51055	-0.00025302	0.053603	2.6564E-05	-0.45695	-0.00022645	495.9050673891618	19.546	0.15162	19.546	19.42	19.571	0					4	2	2	0	0	0	0.99847	1	4842	4842		2.8433	0.4085	1	1231700	+		52811	20624	38399	38705	51557	51557					-0.030678147341404838
TEDLKKIREY	10	Unmodified	_TEDLKKIREY_					0	0	0		tr|U7T5B6|U7T5B6_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00006PE=4SV=1	tr|U7T5B6|U7T5B6_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00006PE=4SV=1	tr|U7T5B6|U7T5B6_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00006PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	432.6139831542969	3	432.238232	1293.69287	-0.095251	-4.1171E-05	0.046547	2.0119E-05	-0.048704	-2.1052E-05	432.23786027266397	20.342	0.70956	20.342	19.877	20.587	0					16	13	2	0	0	0	0.71881	1	5146	5146		3.8763	1.033	1	873140			52812	30017	38400	38706	51558	51558					0.05776722906443865
TEDNESDEQW	10	Unmodified	_TEDNESDEQW_					0	0	0			REV__nc|ENSG00000062194|Q86WP2-4|GPBP1	REV__nc|ENSG00000062194|Q86WP2-4|GPBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	627.474365234375	2	626.733654	1251.45275	-0.73046	-0.00045781	-1.96	-0.0012284	-2.6904	-0.0016862	627.234798503605	92.208	0.45429	92.947	92.635	93.089	0.73902					9	8	2	0	0	0	0.93615	1	35026	35026		3.9444	0	1	1513800	+		52813	16456	38401	38707	51559	51559					-0.16291343222405885
TEDNNQRATIP	11	Unmodified	_TEDNNQRATIP_					0	0	0		RHCE|p.D199N|1|0.35|ENSG00000188672|chr1:25392033-25392033|C/T|missense_variant	RHCE|p.D199N|1|0.35|ENSG00000188672|chr1:25392033-25392033|C/T|missense_variant	RHCE|p.D199N|1|0.35|ENSG00000188672|chr1:25392033-25392033|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	419.6109313964844	3	420.205591	1257.59494	0.34279	0.00014404	4.1384	0.001739	4.4811	0.001883	420.54218927105615	21.563	0.254	21.563	21.352	21.606	0					5	4	2	0	0	0	0.9836	1	5698	5698		6.2344	4.1504	1	561550			52814	29077	38402	38708	51560	51560					-0.023550856895553807
TEDPWKTNY	9	Unmodified	_TEDPWKTNY_					0	0	0		ENSG00000139684|ENST00000378720|ESD	ENSG00000139684|ENST00000378720|ESD	ENSG00000139684|ENST00000378720|ESD	MULTI-SECPEP	A375_MHC_IP_R1	1	577.1696166992188	2	577.261653	1152.50875	-0.26658	-0.00015389	-0.36464	-0.00021049	-0.63122	-0.00036438	577.2611887158666	47.133	0.36274	47.133	46.952	47.315	0					9	6	2	0	0	0	0.65527	1	16611	16611		17.113	7.039	1	1595700			52815	5101	38403	38709	51561	51561					-0.061400455242846874
TEDQGVKVF	9	Unmodified	_TEDQGVKVF_					0	0	0		nc|ENSG00000031823|Q9H6Z4-2|RANBP3;ENSG00000031823|ENST00000340578|RANBP3;ENST00000586344.5_1_19:5917623-5933521:-|nuORF;nc|ENSG00000031823|Q9H6Z4-3|RANBP3;ENST00000592771.5_1_19:5917623-5941693:-|nuORF	nc|ENSG00000031823|Q9H6Z4-2|RANBP3	nc|ENSG00000031823|Q9H6Z4-2|RANBP3	MULTI-SECPEP	A375_MHC_IP_R1	1	512.1610717773438	2	511.761289	1021.50803	0.052858	2.7051E-05	-0.71421	-0.0003655	-0.66135	-0.00033845	511.76101477170397	45.005	0.5573	45.005	44.727	45.284	0					16	10	2	0	0	0	0.022401	1	15731	15731		110.67	39.541	1	6420800			52816	1115	38404	38710	51562	51562					-0.0018684017331906944
TEDQGVKVF	9	Unmodified	_TEDQGVKVF_					0	0	0		nc|ENSG00000031823|Q9H6Z4-2|RANBP3;ENSG00000031823|ENST00000340578|RANBP3;ENST00000586344.5_1_19:5917623-5933521:-|nuORF;nc|ENSG00000031823|Q9H6Z4-3|RANBP3;ENST00000592771.5_1_19:5917623-5941693:-|nuORF	nc|ENSG00000031823|Q9H6Z4-2|RANBP3	nc|ENSG00000031823|Q9H6Z4-2|RANBP3	MULTI-SECPEP	A375_MHC_IP_R2	2	511.9879455566406	2	511.761289	1021.50803	-0.67228	-0.00034405	-0.24775	-0.00012679	-0.92003	-0.00047083	511.76112778427915	44.246	0.55686	45.016	44.682	45.239	0.7691					20	10	3	0	0	0	0.10362	1	16457	16457		55.503	24.866	1	6881600			52817	1115	38404	38710	51563	51563					-0.0018684017331906944
TEDRAYVG	8	Unmodified	_TEDRAYVG_					0	0	0			REV__ENST00000329092.12_1_3:197677808-197679492:+|nuORF	REV__ENST00000329092.12_1_3:197677808-197679492:+|nuORF	MSMS	A375_MHC_IP_R1	1	455.63720703125	2	455.716882	909.41921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.619	1	34.619	34.119	35.119	0								0	0	0	0.16876	1	11431	11431		10.183	0	1		+		52818	21716	38405	38711	51564	51564					-0.03912255412990362
TEDRLFKHLF	10	Unmodified	_TEDRLFKHLF_					0	0	0		nc|ENSG00000120903|Q15822-2|CHRNA2;ENSG00000120903|ENST00000407991|CHRNA2	nc|ENSG00000120903|Q15822-2|CHRNA2	nc|ENSG00000120903|Q15822-2|CHRNA2	MULTI-SECPEP	A375_MHC_IP_R1	1	436.60980224609375	3	435.903183	1304.68772	0.095383	4.1578E-05	0.41231	0.00017973	0.50769	0.0002213	435.9033907065046	21.474	0.35496	21.474	21.301	21.656	0					9	6	2	0	0	0	0.94269	1	5693	5693		3.3196	1.5774	1	611400			52819	3696	38406	38712	51565	51565					0.04756463834473834
TEDTIKKSF	9	Unmodified	_TEDTIKKSF_					0	0	0		nc|ENSG00000163694|A0AV96-2|RBM47;ENSG00000163694|ENST00000295971|RBM47;RBM47|p.Q268K|1|0.07|ENSG00000163694|chr4:40438092-40438092|G/T|missense_variant;RBM47|p.Q268H|1|0.07|ENSG00000163694|chr4:40438090-40438090|C/G|missense_variant;RBM47|p.G267D|1|0.34|ENSG00000163694|chr4:40438094-40438094|C/T|missense_variant;RBM47|p.E256K|1|0.58|ENSG00000163694|chr4:40438128-40438128|C/T|missense_variant	nc|ENSG00000163694|A0AV96-2|RBM47	nc|ENSG00000163694|A0AV96-2|RBM47	MULTI-MSMS	A375_MHC_IP_R1	1	534.71923828125	2	534.782222	1067.54989	-0.93329	-0.00049911	0.1494	7.9895E-05	-0.78389	-0.00041921	534.7821229654971	23.915	0.25426	23.915	23.787	24.042	0					8	4	2	0	0	0	0.042871	1	6668	6668		67.081	28.905	1	4141400			52820	6710	38407	38713	51566	51566					0.01881715515196447
TEDTIKKSF	9	Unmodified	_TEDTIKKSF_					0	0	0		nc|ENSG00000163694|A0AV96-2|RBM47;ENSG00000163694|ENST00000295971|RBM47;RBM47|p.Q268K|1|0.07|ENSG00000163694|chr4:40438092-40438092|G/T|missense_variant;RBM47|p.Q268H|1|0.07|ENSG00000163694|chr4:40438090-40438090|C/G|missense_variant;RBM47|p.G267D|1|0.34|ENSG00000163694|chr4:40438094-40438094|C/T|missense_variant;RBM47|p.E256K|1|0.58|ENSG00000163694|chr4:40438128-40438128|C/T|missense_variant	nc|ENSG00000163694|A0AV96-2|RBM47	nc|ENSG00000163694|A0AV96-2|RBM47	MULTI-SECPEP	A375_MHC_IP_R1	1	356.94873046875	3	356.85724	1067.54989	-0.22478	-8.0215E-05	-0.21078	-7.522E-05	-0.43557	-0.00015543	356.85720057413755	23.915	0.40523	23.915	23.687	24.092	0					10	7	2	0	0	0	0.70421	1	6665	6665		17.049	17.049	1	7639000			52821	6710	38407	38713	51567	51567					0.01881715515196447
TEDVPRKLL	9	Unmodified	_TEDVPRKLL_					0	0	0		ENSG00000089009|ENST00000202773|RPL6;ENST00000454924.1_1_7:63602236-63602701:-|nuORF	ENSG00000089009|ENST00000202773|RPL6	ENSG00000089009|ENST00000202773|RPL6	MULTI-MSMS	A375_MHC_IP_R1	1	357.9449768066406	3	357.544996	1069.61316	-0.19524	-6.9809E-05	0.29264	0.00010463	0.097392	3.4822E-05	357.5450495792918	38.414	0.61135	38.414	38.118	38.73	0					22	11	3	0	0	0	0.46357	1	13032	13032		21.59	4.1475	1	3506300			52822	1907	38408	38714	51568	51568					0.08113701023103204
TEDWAIVIRKY	11	Unmodified	_TEDWAIVIRKY_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-7|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-SECPEP	A375_MHC_IP_R1	1	465.6867370605469	3	465.253993	1392.74015	-0.29493	-0.00013722	-0.79186	-0.00036841	-1.0868	-0.00050563	465.58815134812744	76.446	0.45468	76.446	76.117	76.572	0					13	8	2	0	0	0	0.99165	1	27913	27913		12.228	8.111	1	1282400			52823	3411	38409	38715	51569	51569					0.05949002177408147
TEDWAIVIRKY	11	Unmodified	_TEDWAIVIRKY_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-7|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-SECPEP	A375_MHC_IP_R2	2	465.686279296875	3	465.253993	1392.74015	-0.64271	-0.00029902	-0.36696	-0.00017073	-1.0097	-0.00046975	465.2537543193297	75.691	0.30705	76.432	76.282	76.589	0.74052					11	5	3	0	0	0	0.98336	1	28736	28736		14.838	10.122	1	857070			52824	3411	38409	38715	51570	51570					0.05949002177408147
TEEAPYWTY	9	Unmodified	_TEEAPYWTY_					0	0	0		nc|ENSG00000111666|Q8WUD6-2|CHPT1;ENSG00000111666|ENST00000229266|CHPT1;ENST00000546490.1_1_12:102091639-102108044:+|nuORF	nc|ENSG00000111666|Q8WUD6-2|CHPT1	nc|ENSG00000111666|Q8WUD6-2|CHPT1	MULTI-MSMS	A375_MHC_IP_R2	2	580.650634765625	2	580.250754	1158.48696	-0.22515	-0.00013064	0.34251	0.00019874	0.11736	6.8099E-05	580.2509315932856	88.84	1.0093	89.572	88.976	89.985	0.7318					34	19	3	0	0	0	0.38603	1	33892	33892		25.399	12.868	1	3166000			52825	3009	38410	38716	51571	51571					-0.08594850272857002
TEECEECPM	9	Unmodified	_TEECEECPM_					0	0	0		ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	MULTI-SECPEP	A375_MHC_IP_R1	1	1070.02587890625	1	1070.34751	1069.34023	0.54332	0.00058155	0.33674	0.00036043	0.88007	0.00094198	1071.3504115596363	115.25	0.91165	115.25	114.67	115.58	0					28	17	3	0	0	0	0.80005	1	42254	42254		0.52476	0	1	10152000			52826	7027	38411	38717	51572	51572					-0.19166354816115927
TEECEECPM	9	Unmodified	_TEECEECPM_					0	0	0		ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	MULTI-SECPEP	A375_MHC_IP_R1	1	1071.1165771484375	1	1070.34751	1069.34023	0.43906	0.00046995	1.966	0.0021043	2.405	0.0025742	1071.3509859972278	116.56	1.4741	116.56	115.38	116.85	0					49	28	2	0	0	0	0.78348	1	42596	42596		1.8442	1.3195	1	41606000			52827	7027	38411	38717	51573	51573					-0.19166354816115927
TEECEECPM	9	Unmodified	_TEECEECPM_					0	0	0		ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	MULTI-SECPEP	A375_MHC_IP_R2	2	1070.8787841796875	1	1070.34751	1069.34023	0.067874	7.2649E-05	1.4692	0.0015725	1.5371	0.0016452	1070.351117245983	122.47	2.024	122.85	122.06	124.09	0.3766					56	39	2	0	0	0	0.80005	1	46933	46933		2.0598	0	1	173660000			52828	7027	38411	38717	51574	51574					-0.19166354816115927
TEECEECPM	9	Unmodified	_TEECEECPM_					0	0	0		ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	MULTI-MATCH	A375_MHC_IP_R2	2		1	1070.34751	1069.34023	0.24281	0.00025989	1.3314	0.0014251	1.5742	0.001685	1070.3510094814883	116.18	2.2897	116.84	115.24	117.53	0.65961	0.13866	-0.00037378	NaN	1.8442	87	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61258000			52829	7027	38411	38717							-0.19166354816115927
TEEDFKRLF	9	Unmodified	_TEEDFKRLF_					0	0	0		nc|ENSG00000121390|Q8WXF1-2|PSPC1;ENSG00000121390|ENST00000338910|PSPC1	nc|ENSG00000121390|Q8WXF1-2|PSPC1	nc|ENSG00000121390|Q8WXF1-2|PSPC1	MULTI-SECPEP	A375_MHC_IP_R1	1	395.9366149902344	3	395.536389	1183.58734	0.038307	1.5152E-05	2.2105	0.00087432	2.2488	0.00088947	395.53632241919337	63.019	0.61476	63.019	62.711	63.326	0					25	11	4	0	0	0	0.31606	1	22817	22817		43.982	10.537	1	1364400			52830	3719	38412	38718	51575	51575					0.0028880678080440703
TEEDFKRLF	9	Unmodified	_TEEDFKRLF_					0	0	0		nc|ENSG00000121390|Q8WXF1-2|PSPC1;ENSG00000121390|ENST00000338910|PSPC1	nc|ENSG00000121390|Q8WXF1-2|PSPC1	nc|ENSG00000121390|Q8WXF1-2|PSPC1	MULTI-MATCH	A375_MHC_IP_R2	2		3	395.536389	1183.58734	-0.27783	-0.00010989	-0.1406	-5.5612E-05	-0.41843	-0.00016551	395.5362864708981	62.281	0.50674	63.023	62.724	63.23	0.74263	0.0018982	-0.00016613	NaN	43.982	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1017300			52831	3719	38412	38718							0.0028880678080440703
TEEDKRTL	8	Unmodified	_TEEDKRTL_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-SECPEP	A375_MHC_IP_R2	2	495.6165466308594	2	496.256371	990.498189	-0.87762	-0.00043552	0.19479	9.6664E-05	-0.68283	-0.00033886	496.2568761182165	34.058	0.30383	34.81	34.651	34.955	0.75225					8	5	2	0	0	0	0.91495	1	12258	12258		12.532	0	1	3937800			52832	6498	38413	38719	51576	51576					0.0025597182128649365
TEEDQLLSY	9	Unmodified	_TEEDQLLSY_					0	0	0		ENSG00000102452|ENST00000251127|NALCN;NALCN|p.S1455F|1|0.33|ENSG00000102452|chr13:101068000-101068000|G/A|missense_variant	ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MULTI-SECPEP	A375_MHC_IP_R2	2	548.67431640625	2	549.253494	1096.49243	-1.1058	-0.00060735	3.7206	0.0020435	2.6148	0.0014362	549.2546417744497	58.429	0.61159	59.178	58.879	59.491	0.74894					19	11	3	0	0	0	0.73363	1	22170	22170		10.824	4.6181	1	926290			52833	2380	38414	38720	51577	51577					-0.05195171481022953
TEEDSDDDEE	10	Unmodified	_TEEDSDDDEE_					0	0	0		ENSG00000140265|ENST00000684362|ZSCAN29;ENST00000570181.2_1_15:43656083-43656590:-|nuORF;ENST00000566849.5_1_15:43653273-43656590:-|nuORF;nc|ENSG00000140265|Q8IWY8-2|ZSCAN29	ENSG00000140265|ENST00000684362|ZSCAN29	ENSG00000140265|ENST00000684362|ZSCAN29	MULTI-MSMS	A375_MHC_IP_R2	2	593.1824340820312	2	592.191485	1182.36842	-0.77421	-0.00045848	-0.59942	-0.00035497	-1.3736	-0.00081345	592.1917846938893	50.075	0.50849	50.829	50.65	51.159	0.75406					21	9	3	0	0	0	0.71866	2	18788	18788;18838		3.9444	0	1	2385400			52834	5133	38415	38721	51578;51579	51578					-0.21547338829827822
TEEEIHHF	8	Unmodified	_TEEEIHHF_					0	0	0		ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	MULTI-SECPEP	A375_MHC_IP_R1	1	520.6558227539062	2	521.235439	1040.45632	-0.28307	-0.00014755	-0.30438	-0.00015866	-0.58745	-0.0003062	521.2351126685788	45.616	0.55571	45.616	45.334	45.89	0					16	10	2	0	0	0	0.972	1	15877	15877		2.3027	0	1	3092000			52835	2599	38416	38722	51580	51580					-0.06228583867255111
TEEEKNFKAF	10	Unmodified	_TEEEKNFKAF_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	A375_MHC_IP_R1	1	622.203369140625	2	621.803685	1241.59282	-0.4615	-0.00028696	-0.044082	-2.741E-05	-0.50559	-0.00031437	621.8037479214181	31.386	0.60917	31.386	31.16	31.769	0					32	11	4	0	0	0	7.7883E-07	1	10038	10038		197.81	132.57	1	10530000			52836	7191	38417	38723	51581	51581					-0.018315144273856276
TEEEKNFKAF	10	Unmodified	_TEEEKNFKAF_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-SECPEP	A375_MHC_IP_R1	1	415.2715148925781	3	414.871549	1241.59282	0.30943	0.00012837	-0.27061	-0.00011227	0.03882	1.6105E-05	414.87146117342104	31.341	0.70979	31.341	31.16	31.87	0					43	13	4	0	0	0	0.30731	1	10021	10021		55.249	32.474	1	25257000			52837	7191	38417	38723	51582	51582					-0.018315144273856276
TEEEKNFKAF	10	Unmodified	_TEEEKNFKAF_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	A375_MHC_IP_R2	2	622.203125	2	621.803685	1241.59282	-0.75645	-0.00047036	-0.03394	-2.1104E-05	-0.79039	-0.00049147	621.8036468876419	30.674	0.55415	31.392	31.165	31.719	0.71857					25	10	3	0	0	0	2.9687E-05	1	10782	10782		162.31	106.14	1	10043000			52838	7191	38417	38723	51583	51583					-0.018315144273856276
TEEEKNFKAF	10	Unmodified	_TEEEKNFKAF_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-SECPEP	A375_MHC_IP_R2	2	415.2713317871094	3	414.871549	1241.59282	-0.02801	-1.1621E-05	-0.42237	-0.00017523	-0.45038	-0.00018685	414.87139347356316	30.686	1.0136	31.404	31.114	32.128	0.71857					52	19	5	0	0	0	0.2001	1	10777	10777		74.772	30.38	1	23334000			52839	7191	38417	38723	51584	51584					-0.018315144273856276
TEEELEKL	8	Unmodified	_TEEELEKL_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MSMS	A375_MHC_IP_R1	1	495.6796875	2	495.75313	989.491707	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.168	1	87.168	86.668	87.668	0								0	0	0	0.16876	1	31980	31980		32.305	3.8186	1				52840	5323	38418	38724	51585	51585					-0.0034596613008943677
TEEEPHVRV	9	Unmodified	_TEEEPHVRV_					0	0	0		ENSG00000196376|ENST00000360388|SLC35F1;nc|ENSG00000196376|Q5T1Q4-2|SLC35F1	ENSG00000196376|ENST00000360388|SLC35F1	ENSG00000196376|ENST00000360388|SLC35F1	MULTI-SECPEP	A375_MHC_IP_R1	1	547.703369140625	2	548.275095	1094.53564	-0.53014	-0.00029066	-0.70152	-0.00038463	-1.2317	-0.00067529	548.2748489308356	59.27	1.4737	59.27	58.99	60.464	0					52	28	2	0	0	0	0.55359	1	21389	21389		28.487	5.7506	1	1716200			52841	9033	38419	38725	51586	51586					-0.00784936913078127
TEEERERQFHI	11	Unmodified	_TEEERERQFHI_					0	0	0			REV__ENST00000553208.5_1_12:58087944-58109621:+|nuORF	REV__ENST00000553208.5_1_12:58087944-58109621:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	492.4775695800781	3	491.907545	1472.7008	-0.41791	-0.00020557	1.5137	0.00074459	1.0958	0.00053902	491.9082164882349	43.047	0.55706	43.819	43.623	44.181	0.7724					16	10	2	0	0	0	0.99883	1	16170	16170		0.40827	0	1	1353900	+		52842	18858	38420	38726	51587	51587					-0.01663749844101403
TEEETIFGSW	10	Unmodified	_TEEETIFGSW_					0	0	0		ENSG00000198932|ENST00000537097|GPRASP1	ENSG00000198932|ENST00000537097|GPRASP1	ENSG00000198932|ENST00000537097|GPRASP1	MULTI-SECPEP	A375_MHC_IP_R2	2	599.1769409179688	2	599.766768	1197.51898	-0.69805	-0.00041867	3.9817	0.0023881	3.2836	0.0019694	600.7740835019305	54.67	0.40713	55.421	55.219	55.626	0.75075					19	7	4	0	0	0	0.91909	1	20591	20591		9.3831	0	1	1027400			52843	9376	38421	38727	51588	51588					-0.07187482589688443
TEEEVLEME	9	Unmodified	_TEEEVLEME_					0	0	0		ENSG00000047644|ENST00000380861|WWC3	ENSG00000047644|ENST00000380861|WWC3	ENSG00000047644|ENST00000380861|WWC3	MSMS	A375_MHC_IP_R1	1	554.7000122070312	2	554.739362	1107.46417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.245	1	71.245	70.745	71.745	0								0	0	0	0.14359	1	25880	25880		28.487	11.545	1				52844	1205	38422	38728	51589	51589					-0.08526237452633723
TEEEWEREW	9	Unmodified	_TEEEWEREW_					0	0	0		ENSG00000169918|ENST00000307050|OTUD7A	ENSG00000169918|ENST00000307050|OTUD7A	ENSG00000169918|ENST00000307050|OTUD7A	MULTI-SECPEP	A375_MHC_IP_R1	1	431.2656555175781	3	431.850925	1292.53095	-0.15996	-6.9077E-05	1.8699	0.00080751	1.7099	0.00073844	431.8507084719404	40.259	0.30602	40.259	40.1	40.406	0					11	5	3	0	0	0	0.80535	1	13803	13803		2.2828	1.4184	1	1761500			52845	7451	38423	38729	51590	51590					-0.10361865846516594
TEEFDATV	8	Unmodified	_TEEFDATV_					0	0	0		CON__Q1A7A4	CON__Q1A7A4	CON__Q1A7A4	MSMS	A375_MHC_IP_R2	2	456.1842956542969	2	456.203273	910.391992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.1	1	109.84	109.34	110.34	0.74684								0	0	0	0.16876	1	41179	41179		5.7604	0	1			+	52846	605	38424	38730	51591	51591					-0.06678783744041539
TEEFLFYLPG	10	Unmodified	_TEEFLFYLPG_					0	0	0		ALCAM|p.P278T|1|0.11|ENSG00000170017|chr3:105540076-105540076|C/A|missense_variant	ALCAM|p.P278T|1|0.11|ENSG00000170017|chr3:105540076-105540076|C/A|missense_variant	ALCAM|p.P278T|1|0.11|ENSG00000170017|chr3:105540076-105540076|C/A|missense_variant	MSMS	A375_MHC_IP_R1	1	405.9346923828125	3	405.869257	1214.58594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.474	1	30.474	29.974	30.974	0								0	0	0	0.15435	1	9688	9688		6.1918	2.8722	1				52847	98	38425	38731	51592	51592					-0.012768273079473147
TEEGPSPQF	9	Unmodified	_TEEGPSPQF_					0	0	0		ENSG00000126249|ENST00000246535|PDCD2L	ENSG00000126249|ENST00000246535|PDCD2L	ENSG00000126249|ENST00000246535|PDCD2L	MULTI-MSMS	A375_MHC_IP_R1	1	496.22088623046875	2	496.221997	990.429441	-0.037492	-1.8605E-05	-2.0204	-0.0010026	-2.0579	-0.0010212	496.2206487304059	49.628	0.86209	49.628	48.983	49.845	0					28	16	3	0	0	0	0.41409	1	17487	17487		24.021	3.5669	1	2291200			52848	4033	38426	38732	51593	51593					-0.06615692478419533
TEEGPSPQF	9	Unmodified	_TEEGPSPQF_					0	0	0		ENSG00000126249|ENST00000246535|PDCD2L	ENSG00000126249|ENST00000246535|PDCD2L	ENSG00000126249|ENST00000246535|PDCD2L	MULTI-MSMS	A375_MHC_IP_R2	2	496.62030029296875	2	496.221997	990.429441	-0.58304	-0.00028932	-2.6269	-0.0013035	-3.21	-0.0015929	496.2206644084799	48.91	1.0653	49.667	49.08	50.145	0.75737					34	20	3	0	0	0	0.46038	1	18381	18381		21.747	3.6117	1	3146400			52849	4033	38426	38732	51594	51594					-0.06615692478419533
TEEHSENY	8	Unmodified	_TEEHSENY_					0	0	0		FCRL1|p.G272E|1|0.29|ENSG00000163534|chr1:157801986-157801986|C/T|missense_variant	FCRL1|p.G272E|1|0.29|ENSG00000163534|chr1:157801986-157801986|C/T|missense_variant	FCRL1|p.G272E|1|0.29|ENSG00000163534|chr1:157801986-157801986|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	504.1115417480469	2	504.698886	1007.38322	-0.30902	-0.00015596	1.032	0.00052083	0.72295	0.00036487	504.69952344643644	55.759	0.25597	55.759	55.635	55.891	0					6	4	2	0	0	0	0.972	1	19992	19992		2.0598	1.7091	1	632140			52850	13990	38427	38733	51595	51595					-0.1201775738051083
TEEHSENY	8	Unmodified	_TEEHSENY_					0	0	0		FCRL1|p.G272E|1|0.29|ENSG00000163534|chr1:157801986-157801986|C/T|missense_variant	FCRL1|p.G272E|1|0.29|ENSG00000163534|chr1:157801986-157801986|C/T|missense_variant	FCRL1|p.G272E|1|0.29|ENSG00000163534|chr1:157801986-157801986|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	504.698886	1007.38322	-0.81071	-0.00040916	1.8452	0.00093129	1.0345	0.00052212	504.69974156722395	55.127	0.25498	55.878	55.779	56.034	0.75075	0.059636	0.00027432	NaN	2.0598	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	556510			52851	13990	38427	38733							-0.1201775738051083
TEEIFYYY	8	Unmodified	_TEEIFYYY_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MULTI-SECPEP	A375_MHC_IP_R2	2	376.2763671875	3	376.502574	1126.48589	-0.080363	-3.0257E-05	0.82044	0.0003089	0.74008	0.00027864	376.50284135497753	19.914	0.30246	20.524	20.349	20.651	0.61029					8	5	2	0	0	0	0.972	1	6151	6151		0.40072	0.16487	1	579580			52852	2396	38428	38734	51596	51596					-0.07229064641751393
TEEILEKAF	9	Unmodified	_TEEILEKAF_					0	0	0		nc|ENSG00000271793|O60506-5|SYNCRIP;nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;ENST00000434910.1_1_20:6195317-6195437:+|nuORF	nc|ENSG00000271793|O60506-5|SYNCRIP	nc|ENSG00000271793|O60506-5|SYNCRIP	MULTI-SECPEP	A375_MHC_IP_R1	1	539.6133422851562	2	540.284597	1078.55464	-0.14125	-7.6315E-05	-0.61015	-0.00032965	-0.7514	-0.00040597	540.2845010678824	69.654	0.50598	69.654	69.326	69.832	0					15	9	2	0	0	0	0.27114	1	25243	25243		45.74	31.834	1	1604600			52853	4666	38429	38735	51597	51597					0.018505996579506245
TEEILPILQGP	11	Unmodified	_TEEILPILQGP_					0	0	0			REV__ENST00000523568.1_7:102228019-102246337:-|nuORF	REV__ENST00000523568.1_7:102228019-102246337:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	404.2536926269531	3	403.895695	1208.66525	-0.14841	-5.9942E-05	0.54409	0.00021976	0.39568	0.00015981	403.8959179590952	22.814	0.50217	22.814	22.572	23.074	0					17	9	2	0	0	0	0.73332	1	6132	6132		2.6312	0.37851	1	3733800	+		52854	17411	38430	38736	51598	51598					0.06926819646173499
TEEKFWQF	8	Unmodified	_TEEKFWQF_					0	0	0			REV__nc|ENSG00000183715|Q14982-3|OPCML	REV__nc|ENSG00000183715|Q14982-3|OPCML	MSMS	A375_MHC_IP_R1	1	557.6626586914062	2	557.763832	1113.51311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.049	1	25.049	24.549	25.549	0								0	0	0	0.16876	1	7235	7235		13.508	1.2672	1		+		52855	21771	38431	38737	51599	51599					-0.03910536310718271
TEEKGPRFM	9	Unmodified	_TEEKGPRFM_					0	0	0			REV__ENSG00000166317|ENST00000394810|SYNPO2L	REV__ENSG00000166317|ENST00000394810|SYNPO2L	MSMS	A375_MHC_IP_R1	1	547.703369140625	2	547.768591	1093.52263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.462	1	59.462	58.962	59.962	0								0	0	0	0.1499	1	21389	21389		21.747	2.4897	1		+		52856	20668	38432	38738	51600	51600					-0.020390912968423436
TEEKKAEAKQL	11	Unmodified	_TEEKKAEAKQL_					0	0	0			REV__nc|ENSG00000103222|P33527-8|ABCC1	REV__nc|ENSG00000103222|P33527-8|ABCC1	MULTI-MSMS	A375_MHC_IP_R1	1	425.6164855957031	3	425.56987	1273.68778	0.04241	1.8048E-05	0.23269	9.9024E-05	0.2751	0.00011707	425.9041579799527	23.049	0.30116	23.049	22.773	23.074	0					8	5	2	0	0	0	0.72964	1	6163	6163		9.2438	0	1	925840	+		52857	17259	38433	38739	51601	51601					0.061884190438149744
TEEKKAEAKQL	11	Unmodified	_TEEKKAEAKQL_					0	0	0			REV__nc|ENSG00000103222|P33527-8|ABCC1	REV__nc|ENSG00000103222|P33527-8|ABCC1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	425.56987	1273.68778	0.04241	1.8048E-05	0.23269	9.9024E-05	0.2751	0.00011707	425.9041579799527	23.049	0.30116	23.049	22.773	23.074	0	0	0	NaN	9.2438	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	925840	+		52858	17259	38433	38739							0.061884190438149744
TEEKNMEPEQ	10	Unmodified	_TEEKNMEPEQ_					0	0	0		ENSG00000169857|ENST00000306730|AVEN	ENSG00000169857|ENST00000306730|AVEN	ENSG00000169857|ENST00000306730|AVEN	MULTI-MSMS	A375_MHC_IP_R2	2	617.9795532226562	2	617.766442	1233.51833	-0.60516	-0.00037384	0.88203	0.00054489	0.27687	0.00017104	617.7667678628861	88.343	0.86067	89.075	88.57	89.431	0.7318					34	16	3	0	0	0	0.57505	1	33608	33608		22.736	0	1	3202900			52859	7443	38434	38740	51602	51602					-0.08908645301039542
TEELTADEA	9	Unmodified	_TEELTADEA_					0	0	0			REV__ENSG00000254093|ENST00000314787|PINX1	REV__ENSG00000254093|ENST00000314787|PINX1	MULTI-SECPEP	A375_MHC_IP_R2	2	490.1170349121094	2	489.716744	977.418936	-0.49312	-0.00024149	0.77297	0.00037854	0.27985	0.00013705	489.71706760112676	104.62	1.1204	105.39	105	106.12	0.76308					28	21	2	0	0	0	0.43707	1	39535	39535		21.747	0	1	4941400	+		52860	22861	38435	38741	51603	51603					-0.07067719923520599
TEELTPKQDFY	11	Unmodified	_TEELTPKQDFY_					0	0	0		ENSG00000171827|ENST00000330173|ZNF570	ENSG00000171827|ENST00000330173|ZNF570	ENSG00000171827|ENST00000330173|ZNF570	MULTI-MSMS	A375_MHC_IP_R1	1	686.729248046875	2	685.827357	1369.64016	-0.56903	-0.00039026	0.037218	2.5525E-05	-0.53181	-0.00036473	685.8273518451787	57.14	1.0698	57.14	56.65	57.72	0					55	20	3	0	0	0	0.63737	1	20372	20372		20.415	6.0092	1	38564000			52861	7647	38436	38742	51604	51604					-0.029872799470240352
TEELTPKQDFY	11	Unmodified	_TEELTPKQDFY_					0	0	0		ENSG00000171827|ENST00000330173|ZNF570	ENSG00000171827|ENST00000330173|ZNF570	ENSG00000171827|ENST00000330173|ZNF570	MULTI-MSMS	A375_MHC_IP_R2	2	686.2269287109375	2	685.827357	1369.64016	-1.0058	-0.00068981	0.19052	0.00013066	-0.81528	-0.00055914	685.8274148395435	56.394	1.1221	57.145	56.745	57.867	0.75015					64	21	4	0	0	0	0.23944	1	21447	21447		51.415	32.053	1	48212000			52862	7647	38436	38742	51605	51605					-0.029872799470240352
TEELTPKQDFY	11	Unmodified	_TEELTPKQDFY_					0	0	0		ENSG00000171827|ENST00000330173|ZNF570	ENSG00000171827|ENST00000330173|ZNF570	ENSG00000171827|ENST00000330173|ZNF570	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	685.827357	1369.64016	-0.56903	-0.00039026	0.037218	2.5525E-05	-0.53181	-0.00036473	685.8273518451787	57.14	1.0698	57.14	56.65	57.72	0	-0.0021554	-9.6315E-05	NaN	51.415	55	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38564000			52863	7647	38436	38742							-0.029872799470240352
TEELYGYLKKY	11	Unmodified	_TEELYGYLKKY_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-MSMS	A375_MHC_IP_R1	1	469.9778747558594	3	469.578254	1405.71293	-0.37498	-0.00017608	-0.052386	-2.4599E-05	-0.42737	-0.00020068	469.57815777365477	61.407	0.81722	61.407	61.126	61.943	0					34	15	3	0	0	0	0.45335	1	22123	22123		34.79	30.674	1	7150400			52864	1500	38437	38743	51606	51606					0.026304738463750255
TEELYGYLKKY	11	Unmodified	_TEELYGYLKKY_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-MSMS	A375_MHC_IP_R1	1	704.2630004882812	2	703.863743	1405.71293	-0.6332	-0.00044568	0.12492	8.7929E-05	-0.50827	-0.00035776	703.8637303748449	61.456	0.35831	61.456	61.227	61.585	0					11	6	2	0	0	0	0.10849	1	22172	22172		73.196	57.948	1	2024400			52865	1500	38437	38743	51607	51607					0.026304738463750255
TEELYGYLKKY	11	Unmodified	_TEELYGYLKKY_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-MSMS	A375_MHC_IP_R2	2	469.977783203125	3	469.578254	1405.71293	-0.90397	-0.00042448	0.025066	1.177E-05	-0.8789	-0.00041271	469.57823757847103	60.743	0.75908	61.488	61.16	61.919	0.74503					33	14	3	0	0	0	0.20854	1	22971	22971		53.798	43.271	1	7016200			52866	1500	38437	38743	51608	51608					0.026304738463750255
TEELYGYLKKY	11	Unmodified	_TEELYGYLKKY_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-SECPEP	A375_MHC_IP_R2	2	704.2633666992188	2	703.863743	1405.71293	-1.0158	-0.00071496	-0.13241	-9.3195E-05	-1.1482	-0.00080815	703.8641358984585	60.723	0.40448	61.468	61.314	61.718	0.74503					15	7	3	0	0	0	0.040044	1	23014	23014		91.085	76.679	1	2258300			52867	1500	38437	38743	51609	51609					0.026304738463750255
TEENRNQM	8	Unmodified	_TEENRNQM_					0	0	0			REV__ENSG00000166153|ENST00000550587|DEPDC4	REV__ENSG00000166153|ENST00000550587|DEPDC4	MULTI-SECPEP	A375_MHC_IP_R1	1	510.6356506347656	2	511.222005	1020.42946	-0.39467	-0.00020176	4.2294	0.0021622	3.8348	0.0019604	511.72571926603615	57.005	0.2542	57.005	56.905	57.159	0					6	4	2	0	0	0	0.8957	1	20473	20473		6.7232	1.9672	1	548540	+		52868	20654	38438	38744	51610	51610					-0.07994015750068684
TEEQIKRY	8	Unmodified	_TEEQIKRY_					0	0	0		tr|U7T3L0|U7T3L0_FUSNUTransposaseIS200-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00446PE=4SV=1	tr|U7T3L0|U7T3L0_FUSNUTransposaseIS200-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00446PE=4SV=1	tr|U7T3L0|U7T3L0_FUSNUTransposaseIS200-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00446PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	355.5794677734375	3	356.189101	1065.54547	-0.23136	-8.2407E-05	0.30429	0.00010839	0.072934	2.5978E-05	356.1891750704961	31.843	0.35512	32.58	32.249	32.605	0.73692					8	6	2	0	0	0	0.972	1	11208	11208		14.838	7.7366	1	902320			52869	29978	38439	38745	51611	51611					0.015322510922942456
TEEQIKRY	8	Unmodified	_TEEQIKRY_					0	0	0		tr|U7T3L0|U7T3L0_FUSNUTransposaseIS200-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00446PE=4SV=1	tr|U7T3L0|U7T3L0_FUSNUTransposaseIS200-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00446PE=4SV=1	tr|U7T3L0|U7T3L0_FUSNUTransposaseIS200-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00446PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		3	356.189101	1065.54547	-0.22476	-8.0056E-05	-0.43944	-0.00015652	-0.6642	-0.00023658	356.1888307064791	32.527	0.45328	32.527	32.383	32.836	0	-0.02617	-0.00059811	NaN	14.838	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1405800			52870	29978	38439	38745							0.015322510922942456
TEEQPIDDVP	10	Unmodified	_TEEQPIDDVP_					0	0	0			REV__ENSG00000083642|ENST00000315596|PDS5B	REV__ENSG00000083642|ENST00000315596|PDS5B	MULTI-MSMS	A375_MHC_IP_R1	1	571.1560668945312	2	571.764226	1141.5139	-0.73317	-0.0004192	-0.10832	-6.1932E-05	-0.84149	-0.00048113	571.763967134518	29.277	0.45668	29.277	29.047	29.504	0					19	8	3	0	0	0	0.50967	1	9166	9166		27.629	3.6082	1	11056000	+		52871	16808	38440	38746	51612	51612					-0.05119786452337394
TEEQVSEPKKW	11	Unmodified	_TEEQVSEPKKW_					0	0	0		ENST00000490957.5_1_7:11013950-11101713:+|nuORF;nc|ENSG00000106443|O94880-1|PHF14;ENSG00000106443|ENST00000634607|PHF14	ENST00000490957.5_1_7:11013950-11101713:+|nuORF	ENST00000490957.5_1_7:11013950-11101713:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	454.6291198730469	3	454.229625	1359.66705	-0.33468	-0.00015202	-0.74013	-0.00033619	-1.0748	-0.00048821	454.2289979501081	25.56	0.45835	25.56	25.408	25.866	0					22	8	3	0	0	0	0.33293	1	7531	7531		44.207	28.668	1	4378200			52872	2690	38441	38747	51613	51613					0.0015982866414105956
TEEQVSEPKKW	11	Unmodified	_TEEQVSEPKKW_					0	0	0		ENST00000490957.5_1_7:11013950-11101713:+|nuORF;nc|ENSG00000106443|O94880-1|PHF14;ENSG00000106443|ENST00000634607|PHF14	ENST00000490957.5_1_7:11013950-11101713:+|nuORF	ENST00000490957.5_1_7:11013950-11101713:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	454.229625	1359.66705	-0.64798	-0.00029433	-0.66202	-0.00030071	-1.31	-0.00059504	454.22913538525796	25.038	0.45896	25.682	25.414	25.873	0.64368	0.060992	5.228E-05	NaN	44.207	22	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5917500			52873	2690	38441	38747							0.0015982866414105956
TEEREKKDGKP	11	Unmodified	_TEEREKKDGKP_					0	0	0		ENSG00000146007|ENST00000274712|ZMAT2	ENSG00000146007|ENST00000274712|ZMAT2	ENSG00000146007|ENST00000274712|ZMAT2	MSMS	A375_MHC_IP_R1	1	439.6143493652344	3	439.565008	1315.67319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.815	1	19.815	19.315	20.315	0								0	0	0	0.16182	1	4996	4996		9.2438	0.49199	1				52874	5600	38442	38748	51614	51614					0.02798346895656323
TEERFYKQSSM	11	Unmodified	_TEERFYKQSSM_					0	0	0		ENSG00000151304|ENST00000339397|SRFBP1	ENSG00000151304|ENST00000339397|SRFBP1	ENSG00000151304|ENST00000339397|SRFBP1	MULTI-MSMS	A375_MHC_IP_R2	2	469.6170654296875	3	469.218731	1404.63436	-0.94946	-0.0004455	-1.3547	-0.00063566	-2.3042	-0.0010812	469.21771513753083	21.449	0.25507	22.069	21.928	22.184	0.61932					6	4	2	0	0	0	0.7362	1	6785	6785		1.2148	0.10508	1	1648900			52875	5893	38443	38749	51615	51615					-0.051767017303518514
TEERKEKRRED	11	Unmodified	_TEERKEKRRED_					0	0	0			REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF	REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF	MSMS	A375_MHC_IP_R1	1	492.6560363769531	3	492.590216	1474.74882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.291	1	21.291	20.791	21.791	0								0	0	0	0.16313	1	5577	5577		2.4348	1.1051	1		+		52876	18488	38444	38750	51616	51616					0.03043324075952114
TEERRKLVIA	10	Unmodified	_TEERRKLVIA_					0	0	0		ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	MSMS	A375_MHC_IP_R2	2	405.6026611328125	3	405.5787	1213.71427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.74	1	23.37	22.87	23.87	0.63014								0	0	0	0.15522	1	7241	7241		3.8763	1.2451	1				52877	6056	38445	38751	51617	51617					0.11596152725815045
TEESPSGRGW	10	Unmodified	_TEESPSGRGW_					0	0	0		nc|ENSG00000182670|P53804-3|TTC3;nc|ENSG00000182670|P53804-2|TTC3;ENSG00000182670|ENST00000418766|TTC3	nc|ENSG00000182670|P53804-3|TTC3	nc|ENSG00000182670|P53804-3|TTC3	MULTI-MSMS	A375_MHC_IP_R1	1	553.688720703125	2	553.249077	1104.4836	-0.62303	-0.00034469	0.25521	0.00014119	-0.36782	-0.0002035	553.2489815227743	27.356	0.4051	27.356	27.179	27.584	0					11	7	2	0	0	0	0.098574	2	8270	8270;8325		63.961	19.554	1	2715700			52878	8429	38446	38752	51618;51619	51618					-0.0644610032682067
TEESPSGRGW	10	Unmodified	_TEESPSGRGW_					0	0	0		nc|ENSG00000182670|P53804-3|TTC3;nc|ENSG00000182670|P53804-2|TTC3;ENSG00000182670|ENST00000418766|TTC3	nc|ENSG00000182670|P53804-3|TTC3	nc|ENSG00000182670|P53804-3|TTC3	MULTI-MSMS	A375_MHC_IP_R2	2	553.6884765625	2	553.249077	1104.4836	-1.0351	-0.00057269	0.037695	2.0855E-05	-0.99744	-0.00055184	553.2486950468113	26.804	0.46055	27.464	27.313	27.773	0.65992					14	8	3	0	0	0	0.13881	1	9047	9047		55.503	19.376	1	2321400			52879	8429	38446	38752	51620	51620					-0.0644610032682067
TEESVMGILL	10	Unmodified	_TEESVMGILL_					0	0	0			REV__chr4:142028914-142069855|158|10.05|0.13|6.23|-|1|TE_info:L1PA5,L1PA5_dup3147,L1,LINE,donor,+,142069855,142072490|INPP4B,None|41	REV__chr4:142028914-142069855|158|10.05|0.13|6.23|-|1|TE_info:L1PA5,L1PA5_dup3147,L1,LINE,donor,+,142069855,142072490|INPP4B,None|41	MSMS	A375_MHC_IP_R2	2	546.1978759765625	2	546.286282	1090.55801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.785	1	61.53	61.03	62.03	0.74503								0	0	0	0.14862	1	23022	23022		20.454	0	1		+		52880	15752	38447	38753	51621	51621					0.016355264403273395
TEETKYLRVAE	11	Unmodified	_TEETKYLRVAE_					0	0	0		nc|ENSG00000122203|Q96A73-2|KIAA1191;ENSG00000122203|ENST00000298569|KIAA1191	nc|ENSG00000122203|Q96A73-2|KIAA1191	nc|ENSG00000122203|Q96A73-2|KIAA1191	MSMS	A375_MHC_IP_R2	2	446.9488525390625	3	446.901508	1337.6827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.58	1	22.2	21.7	22.7	0.61932								0	0	0	0.16275	1	6807	6807		4.4062	0.21665	1				52881	3767	38448	38754	51622	51622					0.02736115181187415
TEEVESVLLM	10	Unmodified	_TEEVESVLLM_					0	0	0			REV__ENST00000428210.5_1_2:61720980-61752425:-|nuORF	REV__ENST00000428210.5_1_2:61720980-61752425:-|nuORF	MSMS	A375_MHC_IP_R1	1	575.22265625	2	575.289022	1148.56349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.525	1	88.525	88.025	89.025	0								0	0	0	0.14925	1	32500	32500		19.257	2.3147	1		+		52882	16795	38449	38755	51623	51623					-0.004847947678854325
TEEVLEEVT	9	Unmodified	_TEEVLEEVT_					0	0	0			REV__tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	REV__tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	MSMS	A375_MHC_IP_R2	2	524.7129516601562	2	524.755869	1047.49719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.145	1	96.895	96.395	97.395	0.75045								0	0	0	0.14905	1	36509	36509		23.148	0	1		+		52883	28555	38450	38756	51624	51624					-0.024662873382794714
TEEVSEYCS	9	Carbamidomethyl (C)	_TEEVSEYC(Carbamidomethyl (C))S_	TEEVSEYC(1)S		TEEVSEYC(42)S		0	1	0		nc|ENSG00000184371|P09603-3|CSF1;nc|ENSG00000184371|P09603-2|CSF1;ENSG00000184371|ENST00000329608|CSF1	nc|ENSG00000184371|P09603-3|CSF1	nc|ENSG00000184371|P09603-3|CSF1	MSMS	A375_MHC_IP_R2	2	552.1502075195312	2	552.213511	1102.41247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.49	1	109.25	108.75	109.75	0.75432								0	0	0	0.099728	1	40966	40966		42.095	20.348	1				52884	8577	38451	38757	51625	51625	42				-0.13463981146537662
TEEVTSEEEEE	11	Unmodified	_TEEVTSEEEEE_					0	0	0		nc|ENSG00000140367|Q8WVN8-3|UBE2Q2;nc|ENSG00000140367|Q8WVN8-2|UBE2Q2;nc|ENSG00000140367|Q8WVN8-4|UBE2Q2;ENSG00000140367|ENST00000267938|UBE2Q2	nc|ENSG00000140367|Q8WVN8-3|UBE2Q2	nc|ENSG00000140367|Q8WVN8-3|UBE2Q2	MULTI-MSMS	A375_MHC_IP_R1	1	437.2373352050781	3	437.508782	1309.50452	-0.24815	-0.00010857	1.1028	0.00048247	0.85461	0.0003739	437.50925804073637	32.193	0.41016	32.193	31.973	32.383	0					15	7	3	0	0	0	0.65918	1	10403	10403		18.721	8.406	1	3402900			52885	14639	38452	38758	51626	51626					-0.13785644319136736
TEEVTSEEEEE	11	Unmodified	_TEEVTSEEEEE_					0	0	0		nc|ENSG00000140367|Q8WVN8-3|UBE2Q2;nc|ENSG00000140367|Q8WVN8-2|UBE2Q2;nc|ENSG00000140367|Q8WVN8-4|UBE2Q2;ENSG00000140367|ENST00000267938|UBE2Q2	nc|ENSG00000140367|Q8WVN8-3|UBE2Q2	nc|ENSG00000140367|Q8WVN8-3|UBE2Q2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	437.508782	1309.50452	-0.32219	-0.00014096	1.2311	0.00053861	0.9089	0.00039765	437.5091779706324	31.419	0.40823	32.137	31.974	32.383	0.71857	-0.027936	9.3647E-05	NaN	18.721	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3156800			52886	14639	38452	38758							-0.13785644319136736
TEFAGKGLRF	10	Unmodified	_TEFAGKGLRF_					0	0	0		ENST00000482178.5_1_22:41973324-41980100:-|nuORF;ENSG00000100417|ENST00000216259|PMM1	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	376.2734680175781	3	375.873224	1124.59784	0.68341	0.00025687	-0.26462	-9.9463E-05	0.41879	0.00015741	375.873096091286	49.523	0.81466	49.523	49.235	50.049	0					34	15	4	0	0	0	0.33054	1	17505	17505		34.222	19.816	1	5178700			52887	2178	38453	38759	51627	51627					0.04052834225922197
TEFAGKGLRF	10	Unmodified	_TEFAGKGLRF_					0	0	0		ENST00000482178.5_1_22:41973324-41980100:-|nuORF;ENSG00000100417|ENST00000216259|PMM1	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	563.7066650390625	2	563.306198	1124.59784	-0.042125	-2.3729E-05	0.8486	0.00047802	0.80648	0.00045429	563.3064096491875	49.398	0.86081	49.398	48.882	49.743	0					26	16	3	0	0	0	0.42334	1	17508	17508		36.506	17.249	1	2162100			52888	2178	38453	38759	51628	51628					0.04052834225922197
TEFAGKGLRF	10	Unmodified	_TEFAGKGLRF_					0	0	0		ENST00000482178.5_1_22:41973324-41980100:-|nuORF;ENSG00000100417|ENST00000216259|PMM1	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	376.27313232421875	3	375.873224	1124.59784	0.22118	8.3135E-05	-0.38167	-0.00014346	-0.16049	-6.0324E-05	375.87302791315494	48.616	0.76173	49.373	49.03	49.792	0.75737					24	14	2	0	0	0	0.040108	1	18238	18238		59.052	39.691	1	6366800			52889	2178	38453	38759	51629	51629					0.04052834225922197
TEFAGKGLRF	10	Unmodified	_TEFAGKGLRF_					0	0	0		ENST00000482178.5_1_22:41973324-41980100:-|nuORF;ENSG00000100417|ENST00000216259|PMM1	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	563.7058715820312	2	563.306198	1124.59784	-0.5717	-0.00032204	0.14034	7.9053E-05	-0.43136	-0.00024299	563.3062760948616	48.549	0.5601	49.307	49.13	49.69	0.75737					16	10	2	0	0	0	0.38709	1	18259	18259		34.932	21.026	1	1818800			52890	2178	38453	38759	51630	51630					0.04052834225922197
TEFDLRNYDRK	11	Unmodified	_TEFDLRNYDRK_					0	0	0		tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1	tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1	tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	486.64373779296875	3	486.244157	1455.71064	-0.33802	-0.00016436	-0.71898	-0.0003496	-1.057	-0.00051396	486.243712239113	65.221	0.55917	65.221	64.903	65.462	0					25	10	3	0	0	0	0.73016	1	23581	23581		4.4062	4.4062	1	5883300			52891	29513	38454	38760	51631	51631					0.0010143816127765604
TEFDQLRRL	9	Unmodified	_TEFDQLRRL_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-MSMS	A375_MHC_IP_R1	1	393.6158142089844	3	393.21565	1176.62512	0.17486	6.8757E-05	-0.72192	-0.00028387	-0.54706	-0.00021511	393.2157420171418	56.574	0.6608	56.574	56.347	57.007	0					26	12	3	0	0	0	0.26169	1	20300	20300		33.445	4.9504	1	2196000			52892	6703	38455	38761	51632	51632					0.04387317766304477
TEFDQLRRL	9	Unmodified	_TEFDQLRRL_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-MSMS	A375_MHC_IP_R2	2	393.61566162109375	3	393.21565	1176.62512	-0.29681	-0.00011671	-0.11746	-4.6187E-05	-0.41427	-0.0001629	393.21578137958556	55.744	0.81414	56.494	56.134	56.948	0.75015					28	15	4	0	0	0	0.37338	1	21080	21080		26.021	3.3626	1	1826500			52893	6703	38455	38761	51633	51633					0.04387317766304477
TEFEDIKSGY	10	Unmodified	_TEFEDIKSGY_					0	0	0		nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;SET|p.D163*|1|0.21|ENSG00000119335|chr9:128692935-128692936|-/T|frameshift_variant;ENST00000514799.1_1_5:59755891-59756539:-|nuORF;ENST00000437270.1_1_9:140535772-140535991:-|nuORF;ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP	nc|ENSG00000119335|Q01105-3|SET;ENSG00000230667|ENST00000596516|SETSIP	nc|ENSG00000119335|Q01105-3|SET	MULTI-MSMS	A375_MHC_IP_R1	1	596.7217407226562	2	594.774593	1187.53463	-0.28567	-0.00016991	0.01595	9.4864E-06	-0.26972	-0.00016042	594.774618677064	50.023	2.2375	50.023	49.642	51.879	0					148	43	6	0	0	0	0.5761	1	17710	17710		22.658	9.6156	1	499080000			52894	3585;9719	38456	38762	51634	51634					-0.05163196072635401
TEFEDIKSGY	10	Unmodified	_TEFEDIKSGY_					0	0	0		nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;SET|p.D163*|1|0.21|ENSG00000119335|chr9:128692935-128692936|-/T|frameshift_variant;ENST00000514799.1_1_5:59755891-59756539:-|nuORF;ENST00000437270.1_1_9:140535772-140535991:-|nuORF;ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP	nc|ENSG00000119335|Q01105-3|SET;ENSG00000230667|ENST00000596516|SETSIP	nc|ENSG00000119335|Q01105-3|SET	MULTI-MSMS	A375_MHC_IP_R2	2	596.6927490234375	2	594.774593	1187.53463	-0.84606	-0.00050321	0.24623	0.00014645	-0.59982	-0.00035676	594.7747338515009	49.464	2.3818	50.221	49.792	52.174	0.75737					146	46	7	0	0	0	0.63336	2	18574	18530;18574		18.373	5.3306	1	580610000			52895	3585;9719	38456	38762	51635;51636	51636					-0.05163196072635401
TEFFQKLGY	9	Unmodified	_TEFFQKLGY_					0	0	0		nc|ENSG00000189157|Q6ZV65-2|FAM47E;nc|ENSG00000189157|Q6ZV65-1|FAM47E;ENSG00000189157|ENST00000424749|FAM47E;ENST00000509377.1_3_4:77172961-77230323:+|nuORF	nc|ENSG00000189157|Q6ZV65-2|FAM47E	nc|ENSG00000189157|Q6ZV65-2|FAM47E	MULTI-SECPEP	A375_MHC_IP_R1	1	567.18701171875	2	566.787307	1131.56006	-0.30225	-0.00017131	0.25808	0.00014628	-0.044169	-2.5034E-05	566.7873155387856	81.776	0.55594	81.776	81.506	82.062	0					24	10	4	0	0	0	0.1277	1	29905	29905		46.021	35.947	1	2647000			52896	8965	38457	38763	51637	51637					-0.0004567675957787287
TEFFQKLGY	9	Unmodified	_TEFFQKLGY_					0	0	0		nc|ENSG00000189157|Q6ZV65-2|FAM47E;nc|ENSG00000189157|Q6ZV65-1|FAM47E;ENSG00000189157|ENST00000424749|FAM47E;ENST00000509377.1_3_4:77172961-77230323:+|nuORF	nc|ENSG00000189157|Q6ZV65-2|FAM47E	nc|ENSG00000189157|Q6ZV65-2|FAM47E	MULTI-MSMS	A375_MHC_IP_R2	2	567.393310546875	2	566.787307	1131.56006	-0.49537	-0.00028077	-0.010971	-6.2183E-06	-0.50634	-0.00028699	566.7870727580965	81.057	0.56209	81.802	81.468	82.03	0.74474					18	10	2	0	0	0	0.11296	1	30695	30695		48.346	34.44	1	2202100			52897	8965	38457	38763	51638	51638					-0.0004567675957787287
TEFGHPAAI	9	Unmodified	_TEFGHPAAI_					0	0	0		ENSG00000116213|ENST00000270708|WRAP73;WRAP73|p.I258T|1|0.25|ENSG00000116213|chr1:3635040-3635040|A/G|missense_variant;ENST00000469643.1_1_1:3549956-3551942:-|nuORF;ENST00000497940.5_1_1:3549956-3553597:-|nuORF	ENSG00000116213|ENST00000270708|WRAP73	ENSG00000116213|ENST00000270708|WRAP73	MULTI-SECPEP	A375_MHC_IP_R1	1	472.137939453125	2	471.737617	941.460681	-0.22378	-0.00010556	0.31429	0.00014826	0.090512	4.2698E-05	471.7377959361709	43.207	0.55988	43.207	42.942	43.502	0					15	10	2	0	0	0	0.14105	1	15023	15023		42.095	15.211	1	2984200			52898	3386	38458	38764	51639	51639					-0.012390746536766528
TEFGHPAAI	9	Unmodified	_TEFGHPAAI_					0	0	0		ENSG00000116213|ENST00000270708|WRAP73;WRAP73|p.I258T|1|0.25|ENSG00000116213|chr1:3635040-3635040|A/G|missense_variant;ENST00000469643.1_1_1:3549956-3551942:-|nuORF;ENST00000497940.5_1_1:3549956-3553597:-|nuORF	ENSG00000116213|ENST00000270708|WRAP73	ENSG00000116213|ENST00000270708|WRAP73	MULTI-SECPEP	A375_MHC_IP_R2	2	472.13739013671875	2	471.737617	941.460681	-0.51885	-0.00024476	-0.057172	-2.697E-05	-0.57602	-0.00027173	471.737541752072	42.369	0.50986	43.141	42.962	43.472	0.7724					16	9	2	0	0	0	0.14105	1	15785	15785		42.095	15.211	1	3553000			52899	3386	38458	38764	51640	51640					-0.012390746536766528
TEFGIDYNSW	10	Unmodified	_TEFGIDYNSW_					0	0	0		ENSG00000131043|ENST00000320849|AAR2	ENSG00000131043|ENST00000320849|AAR2	ENSG00000131043|ENST00000320849|AAR2	MSMS	A375_MHC_IP_R2	2	616.2184448242188	2	616.266936	1230.51932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.81	0.99999	128.08	127.58	128.58	0.26592								0	0	0	0.15207	1	50172	50172		13.906	1.3745	1				52900	4303	38459	38765	51641	51641					-0.08672062869845831
TEFGQSINI	9	Unmodified	_TEFGQSINI_					0	0	0		HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant;ENSG00000128731|ENST00000261609|HERC2;ENST00000570209.1_1_15:31127242-31129800:+|nuORF	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	505.1429443359375	2	504.753464	1007.49238	-0.58048	-0.000293	0.42773	0.0002159	-0.15275	-7.7099E-05	504.7537771104989	86.163	0.60655	86.163	85.87	86.477	0					17	11	2	0	0	0	0.50702	1	31566	31566		32.305	22.232	1	1686500			52901	14109	38460	38766	51642	51642					-0.011071266903741162
TEFGTYAGAY	10	Unmodified	_TEFGTYAGAY_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.G674Wfs*6|1|0.27|ENSG00000114867|chr3:184323170-184323171|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	A375_MHC_IP_R2	2	540.6370849609375	2	540.237647	1078.46074	-0.73501	-0.00039708	-0.086799	-4.6892E-05	-0.82181	-0.00044397	540.2376622643384	68.555	0.50624	69.29	69.018	69.525	0.73511					23	9	4	0	0	0	0.60556	1	26031	26031		20.454	1.1966	1	2297500			52902	3254	38461	38767	51643	51643					-0.0753511944433285
TEFHAKEQY	9	Unmodified	_TEFHAKEQY_					0	0	0		nc|ENSG00000140471|Q8NG48-3|LINS1;ENST00000559149.5_1_15:101113500-101121059:-|nuORF;nc|ENSG00000140471|Q8NG48-2|LINS1;ENSG00000140471|ENST00000314742|LINS1;ENST00000561073.1_1_15:101116892-101121059:-|nuORF	nc|ENSG00000140471|Q8NG48-3|LINS1	nc|ENSG00000140471|Q8NG48-3|LINS1	MSMS	A375_MHC_IP_R2	2	576.66748046875	2	576.769645	1151.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.046	1	60.793	60.293	61.293	0.74714								0	0	0	0.15486	1	22725	22725		7.9102	0.62092	1				52903	5158	38462	38768	51644	51644					-0.04496339287379669
TEFHGGLHY	9	Unmodified	_TEFHGGLHY_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-MSMS	A375_MHC_IP_R1	1	531.1455078125	2	530.745973	1059.47739	-0.80761	-0.00042864	0.54526	0.00028939	-0.26236	-0.00013925	530.7460141114636	32.535	0.70901	32.535	32.127	32.836	0					27	13	4	0	0	0	0.0070665	2	10511	10456;10511		131.3	95.254	1	6662400			52904	9912	38463	38769	51645;51646	51646					-0.049965737676984645
TEFHGGLHY	9	Unmodified	_TEFHGGLHY_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-SECPEP	A375_MHC_IP_R1	1	354.56640625	3	354.166408	1059.47739	-0.26811	-9.4954E-05	0.091653	3.246E-05	-0.17645	-6.2493E-05	354.16641629364096	32.496	0.65628	32.496	32.282	32.938	0					39	12	4	0	0	0	0.04649	1	10496	10496		47.749	35.508	1	23171000			52905	9912	38463	38769	51647	51647					-0.049965737676984645
TEFHGGLHY	9	Unmodified	_TEFHGGLHY_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-MSMS	A375_MHC_IP_R2	2	531.1456909179688	2	530.745973	1059.47739	-0.64013	-0.00033975	-0.36904	-0.00019587	-1.0092	-0.00053561	530.7459359217216	31.756	0.55719	32.493	32.3	32.857	0.73691					17	10	2	0	0	0	0.0098824	1	11229	11229		117.6	67.666	1	5476100			52906	9912	38463	38769	51648	51648					-0.049965737676984645
TEFHGGLHY	9	Unmodified	_TEFHGGLHY_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-SECPEP	A375_MHC_IP_R2	2	354.5664367675781	3	354.166408	1059.47739	-0.23878	-8.4568E-05	0.079957	2.8318E-05	-0.15882	-5.625E-05	354.1664109164021	31.742	0.65936	32.478	32.198	32.857	0.73691					34	12	4	0	0	0	0.011433	1	11222	11222		65.235	48.122	1	21428000			52907	9912	38463	38769	51649	51649					-0.049965737676984645
TEFHPCAW	8	Unmodified	_TEFHPCAW_					0	0	0			REV__nc|ENSG00000125755|Q92797-2|SYMPK	REV__nc|ENSG00000125755|Q92797-2|SYMPK	MULTI-MSMS	A375_MHC_IP_R2	2	496.11029052734375	2	495.710545	989.406537	-0.55601	-0.00027562	0.1613	7.9957E-05	-0.39471	-0.00019566	495.71052588500345	45.106	0.45687	45.875	45.646	46.103	0.7691					14	8	2	0	0	0	0.77123	1	16885	16885		14.582	2.0501	1	1622900	+		52908	27205	38464	38770	51650	51650					-0.0885899007688522
TEFHPCAW	8	Unmodified	_TEFHPCAW_					0	0	0			REV__nc|ENSG00000125755|Q92797-2|SYMPK	REV__nc|ENSG00000125755|Q92797-2|SYMPK	MULTI-SECPEP	A375_MHC_IP_R2	2	495.32379150390625	2	495.710545	989.406537	-0.55601	-0.00027562	0.1613	7.9957E-05	-0.39471	-0.00019566	495.71052588500345	45.106	0.45687	45.875	45.646	46.103	0.7691					14	8	2	0	0	0	0.90224	1	16882	16882		19.439	19.439	1	1622900	+		52909	27205	38464	38770	51651	51651					-0.0885899007688522
TEFHPGTTSF	10	Unmodified	_TEFHPGTTSF_					0	0	0		ENSG00000134294|ENST00000256689|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	MULTI-MSMS	A375_MHC_IP_R1	1	562.6563720703125	2	562.256371	1122.49819	-0.26439	-0.00014865	0.61711	0.00034697	0.35272	0.00019832	562.2570632872354	49.922	0.96932	49.922	49.336	50.305	0					35	18	3	0	0	0	0.0048327	1	17672	17672		96.111	50.09	1	3977200			52910	4563	38465	38771	51652	51652					-0.058160281787195345
TEFHPGTTSF	10	Unmodified	_TEFHPGTTSF_					0	0	0		ENSG00000134294|ENST00000256689|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	MULTI-SECPEP	A375_MHC_IP_R2	2	562.6565551757812	2	562.256371	1122.49819	-0.7815	-0.0004394	0.42453	0.0002387	-0.35697	-0.00020071	562.2567938290885	49.177	0.65803	49.934	49.639	50.297	0.75737					27	12	3	0	0	0	0.20174	1	18466	18466		96.111	96.111	1	3851000			52911	4563	38465	38771	51653	51653					-0.058160281787195345
TEFHPRFS	8	Unmodified	_TEFHPRFS_					0	0	0		ENST00000424768.1_1_7:105926115-105926304:-|nuORF	ENST00000424768.1_1_7:105926115-105926304:-|nuORF	ENST00000424768.1_1_7:105926115-105926304:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1021.0863037109375	1	1020.48976	1019.48248	-0.1608	-0.00016409	-0.079738	-8.1372E-05	-0.24054	-0.00024547	1020.4913497093227	121.3	0.15317	121.3	121.21	121.36	0					4	2	2	0	0	0	0.97144	1	45024	45024		5.2307	0	1	9677000			52912	11779	38466	38772	51654	51654					-0.02648269905091638
TEFKFLNIK	9	Unmodified	_TEFKFLNIK_					0	0	0		nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3;ENSG00000262209|ENST00000576222|PCDHGB3	nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3	nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3	MSMS	A375_MHC_IP_R1	1	380.5890808105469	3	380.553492	1138.63865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.277	1	20.277	19.777	20.777	0								0	0	0	0.15438	1	5180	5180		14.405	3.6059	1				52913	9943	38467	38773	51655	51655					0.07487175545497848
TEFMLCAGLW	10	Unmodified	_TEFMLCAGLW_					0	0	0		ENST00000595316.5_1_19:51379973-51380306:+|nuORF;nc|ENSG00000167751|P20151-4|KLK2;ENST00000597727.5_1_19:51376719-51380306:+|nuORF;nc|ENSG00000167751|P20151-2|KLK2;ENSG00000167751|ENST00000325321|KLK2	ENST00000595316.5_1_19:51379973-51380306:+|nuORF	ENST00000595316.5_1_19:51379973-51380306:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	586.16943359375	2	585.769745	1169.52494	-0.17226	-0.00010091	-0.30169	-0.00017672	-0.47395	-0.00027763	585.7695624813974	56.779	0.45968	56.779	56.599	57.059	0					19	8	3	0	0	0	0.65982	1	20352	20352		26.884	0	1	3191300			52914	7220	38468	38774	51656	51656					-0.05304378883397476
TEFNGIRDY	9	Unmodified	_TEFNGIRDY_					0	0	0		ENSG00000145569|ENST00000274217|OTULINL	ENSG00000145569|ENST00000274217|OTULINL	ENSG00000145569|ENST00000274217|OTULINL	MULTI-SECPEP	A375_MHC_IP_R2	2	558.161865234375	2	557.76182	1113.50909	-0.55717	-0.00031077	0.72863	0.0004064	0.17147	9.5637E-05	557.7622149392947	46.854	0.71277	47.615	47.155	47.867	0.76128					20	13	2	0	0	0	0.49701	1	17591	17591		40.239	17.503	1	2504100			52915	5565	38469	38775	51657	51657					-0.043126258044367205
TEFPGDARRAF	11	Unmodified	_TEFPGDARRAF_					0	0	0		ENSG00000174197|ENST00000703841|MGA;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA	ENSG00000174197|ENST00000703841|MGA	ENSG00000174197|ENST00000703841|MGA	MULTI-MSMS	A375_MHC_IP_R2	2	422.954345703125	3	422.879038	1265.61528	-0.015783	-6.6741E-06	-0.31902	-0.00013491	-0.3348	-0.00014158	422.87891321323036	43.224	0.86047	43.997	43.472	44.333	0.7724					26	16	2	0	0	0	0.72773	1	16195	16195		11.065	2.621	1	1718900			52916	7862	38470	38776	51658	51658					-0.006898702391254119
TEFPGDARRAF	11	Unmodified	_TEFPGDARRAF_					0	0	0		ENSG00000174197|ENST00000703841|MGA;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA	ENSG00000174197|ENST00000703841|MGA	ENSG00000174197|ENST00000703841|MGA	MULTI-MATCH	A375_MHC_IP_R1	1		3	422.879038	1265.61528	-0.029709	-1.2563E-05	-0.066233	-2.8009E-05	-0.095942	-4.0572E-05	422.8790974555758	43.828	0.61084	43.828	43.502	44.113	0	-0.084221	0.00021576	NaN	11.065	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1659200			52917	7862	38470	38776							-0.006898702391254119
TEFPGDARRAF	11	Unmodified	_TEFPGDARRAF_					0	0	0		ENSG00000174197|ENST00000703841|MGA;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA	ENSG00000174197|ENST00000703841|MGA	ENSG00000174197|ENST00000703841|MGA	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	422.879038	1265.61528	-0.015783	-6.6741E-06	-0.31902	-0.00013491	-0.3348	-0.00014158	422.87891321323036	43.224	0.86047	43.997	43.472	44.333	0.7724	0.084221	-0.00010493	NaN	11.065	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1718900			52918	7862	38470	38776							-0.006898702391254119
TEFPNPLISKY	11	Unmodified	_TEFPNPLISKY_					0	0	0		nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-2|GON4L	nc|ENSG00000116580|Q3T8J9-3|GON4L	nc|ENSG00000116580|Q3T8J9-3|GON4L	MULTI-SECPEP	A375_MHC_IP_R1	1	655.245361328125	2	654.845353	1307.67615	-0.40133	-0.00026281	0.27572	0.00018055	-0.12561	-8.2258E-05	654.8454862218916	87.996	0.66275	87.996	87.696	88.358	0					29	12	3	0	0	0	0.57164	1	32265	32265		43.477	33.933	1	6516700			52919	3407	38471	38777	51659	51659					0.034622220204710175
TEFQIDGFVD	10	Unmodified	_TEFQIDGFVD_					0	0	0			REV__TRPM8|p.A102V|1|0.27|ENSG00000144481|chr2:233937466-233937466|C/T|missense_variant	REV__TRPM8|p.A102V|1|0.27|ENSG00000144481|chr2:233937466-233937466|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	586.1691284179688	2	585.769311	1169.52407	-0.74803	-0.00043817	0.69581	0.00040758	-0.052223	-3.059E-05	585.7695584531078	56.145	0.61234	56.895	56.54	57.152	0.75014					24	11	4	0	0	0	0.30287	1	21220	21220		39.95	5.0176	1	3620300	+		52920	28916	38472	38778	51660	51660					-0.05391178727109036
TEFQLGKNY	9	Unmodified	_TEFQLGKNY_					0	0	0		ENST00000490632.1_1_2:111406757-111408294:-|nuORF	ENST00000490632.1_1_2:111406757-111408294:-|nuORF	ENST00000490632.1_1_2:111406757-111408294:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6165161132812	2	550.274564	1098.53457	-0.72557	-0.00039926	-0.31917	-0.00017563	-1.0447	-0.0005749	550.2749837437276	63.407	0.66116	64.147	63.987	64.648	0.74022					20	12	3	0	0	0	0.55359	1	24221	24221		10.824	0	1	871340			52921	12646	38473	38779	51661	51661					-0.010751512820206699
TEFQSVIEVY	10	Unmodified	_TEFQSVIEVY_					0	0	0			REV__nc|ENSG00000006715|P49754-2|VPS41	REV__nc|ENSG00000006715|P49754-2|VPS41	MULTI-SECPEP	A375_MHC_IP_R1	1	608.2001342773438	2	607.800611	1213.58667	-0.19983	-0.00012145	0.80662	0.00049027	0.6068	0.00036881	607.8004898455748	49.973	0.66469	49.973	49.692	50.357	0					26	12	3	0	0	0	0.47386	1	17706	17706		26.268	4.7312	1	4171900	+		52922	16142	38474	38780	51662	51662					-0.011580326588955359
TEFQSVIEVY	10	Unmodified	_TEFQSVIEVY_					0	0	0			REV__nc|ENSG00000006715|P49754-2|VPS41	REV__nc|ENSG00000006715|P49754-2|VPS41	MULTI-SECPEP	A375_MHC_IP_R2	2	608.199951171875	2	607.800611	1213.58667	-0.65858	-0.00040028	0.75356	0.00045802	0.094986	5.7732E-05	607.8006760662104	49.273	0.6076	50.03	49.639	50.247	0.75737					25	11	3	0	0	0	0.75488	1	18522	18522		18.373	0	1	3634500	+		52923	16142	38474	38780	51663	51663					-0.011580326588955359
TEFRNIQKL	9	Unmodified	_TEFRNIQKL_					0	0	0		MKI67|p.T2594Rfs*26|1|0.26|ENSG00000148773|chr10:128104058-128104059|TG/-|frameshift_variant;nc|ENSG00000148773|P46013-2|MKI67;ENSG00000148773|ENST00000368654|MKI67	MKI67|p.T2594Rfs*26|1|0.26|ENSG00000148773|chr10:128104058-128104059|TG/-|frameshift_variant	MKI67|p.T2594Rfs*26|1|0.26|ENSG00000148773|chr10:128104058-128104059|TG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	575.2246704101562	2	574.824755	1147.63496	-0.34736	-0.00019967	-0.28536	-0.00016403	-0.63271	-0.0003637	574.8246579252357	55.838	0.45939	56.589	56.337	56.796	0.75014					17	8	3	0	0	0	0.67483	1	21132	21132		6.2058	0	1	3064500			52924	5761	38475	38781	51664	51664					0.06704505771654112
TEFSCRELE	9	Unmodified	_TEFSCRELE_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.V1071Wfs*3|1|0.24|ENSG00000173546|chr15:75687855-75687856|-/GCCAC|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MSMS	A375_MHC_IP_R2	2	557.1657104492188	2	557.247689	1112.48082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.248	1	35	34.5	35.5	0.75225								0	0	0	0.15486	1	12333	12333		13.042	2.2185	1				52925	7807	38476	38782	51665	51665					-0.07091691776031439
TEFSIPHKI	9	Unmodified	_TEFSIPHKI_					0	0	0		ENSG00000102763|ENST00000379310|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8	ENSG00000102763|ENST00000379310|VWA8	ENSG00000102763|ENST00000379310|VWA8	MULTI-SECPEP	A375_MHC_IP_R1	1	536.6951904296875	2	536.295299	1070.57605	-0.59249	-0.00031775	-0.26391	-0.00014153	-0.8564	-0.00045928	536.2953796755984	51.347	0.4567	51.347	51.168	51.625	0					11	8	2	0	0	0	0.75842	1	18249	18249		8.7454	0.58988	1	1429500			52926	2391	38477	38783	51666	51666					0.043580294773164496
TEFSIPHKI	9	Unmodified	_TEFSIPHKI_					0	0	0		ENSG00000102763|ENST00000379310|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8	ENSG00000102763|ENST00000379310|VWA8	ENSG00000102763|ENST00000379310|VWA8	MULTI-MSMS	A375_MHC_IP_R2	2	358.265869140625	3	357.865958	1070.57605	-0.33821	-0.00012103	0.041104	1.471E-05	-0.29711	-0.00010632	357.86590092400587	50.606	0.70716	51.36	51.057	51.765	0.75406					33	13	3	0	0	0	0.27064	2	19023	19007;19023		24.882	5.2556	1	5714400			52927	2391	38477	38783	51667;51668	51668					0.043580294773164496
TEFSLAAFEQ	10	Unmodified	_TEFSLAAFEQ_					0	0	0		MAML1|p.P304L|1|0.1|ENSG00000161021|chr5:179765921-179765921|C/T|missense_variant	MAML1|p.P304L|1|0.1|ENSG00000161021|chr5:179765921-179765921|C/T|missense_variant	MAML1|p.P304L|1|0.1|ENSG00000161021|chr5:179765921-179765921|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	571.917724609375	2	571.771854	1141.52915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.32	1	75.32	74.82	75.82	0								0	0	0	0.15265	1	27441	27441		12.241	1.4411	1				52928	14341	38478	38784	51669	51669					-0.035948748644841544
TEFSNFSFY	9	Unmodified	_TEFSNFSFY_					0	0	0			REV__ENST00000572856.1_1_18:3607136-3607283:+|nuORF	REV__ENST00000572856.1_1_18:3607136-3607283:+|nuORF	MSMS	A375_MHC_IP_R1	1	571.1821899414062	2	571.245472	1140.47639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.104	1	69.104	68.604	69.604	0								0	0	0	0.15486	1	25070	25070		12.532	2.4576	1		+		52929	26289	38479	38785	51670	51670					-0.08822832927262425
TEFSNFSFY	9	Unmodified	_TEFSNFSFY_					0	0	0			REV__ENST00000572856.1_1_18:3607136-3607283:+|nuORF	REV__ENST00000572856.1_1_18:3607136-3607283:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	571.1815795898438	2	571.245472	1140.47639	-0.1868	-0.00010671	-1.3299	-0.00075968	-1.5167	-0.00086639	571.2445192148837	68.222	1.8761	68.957	68.459	70.335	0.73511					46	36	2	0	0	0	0.5339	1	25949	25949		18.135	9.3896	1	1663800	+		52930	26289	38479	38785	51671	51671					-0.08822832927262425
TEFSRDEEY	9	Unmodified	_TEFSRDEEY_					0	0	0		ZBTB10|p.P829S|1|0.29|ENSG00000205189|chr8:80519397-80519397|C/T|missense_variant	ZBTB10|p.P829S|1|0.29|ENSG00000205189|chr8:80519397-80519397|C/T|missense_variant	ZBTB10|p.P829S|1|0.29|ENSG00000205189|chr8:80519397-80519397|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	588.1377563476562	2	588.2462	1174.47785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.358	1	19.358	18.858	19.858	0								0	0	0	0.15486	1	4740	4740		12.532	3.1484	1				52931	30182	38480	38786	51672	51672					-0.10241243629184282
TEFTDHELQEW	11	Unmodified	_TEFTDHELQEW_					0	0	0		ENSG00000115756|ENST00000307845|HPCAL1	ENSG00000115756|ENST00000307845|HPCAL1	ENSG00000115756|ENST00000307845|HPCAL1	MULTI-MSMS	A375_MHC_IP_R1	1	718.2111206054688	2	717.812239	1433.60992	-0.66604	-0.00047809	0.020911	1.501E-05	-0.64513	-0.00046308	717.8122895542582	76.782	0.66216	76.782	76.471	77.133	0					34	12	4	0	0	0	1.5686E-05	1	27951	27951		147.24	73.041	1	8379200			52932	3335	38481	38787	51673	51673					-0.0895363861225178
TEFTDHELQEW	11	Unmodified	_TEFTDHELQEW_					0	0	0		ENSG00000115756|ENST00000307845|HPCAL1	ENSG00000115756|ENST00000307845|HPCAL1	ENSG00000115756|ENST00000307845|HPCAL1	MULTI-MSMS	A375_MHC_IP_R2	2	718.2116088867188	2	717.812239	1433.60992	-0.75416	-0.00054135	-0.16559	-0.00011886	-0.91975	-0.00066021	717.8121264443348	76.211	0.66051	76.952	76.64	77.301	0.74052					28	12	3	0	0	0	7.6884E-06	1	28894	28894		150.62	76.419	1	7272900			52933	3335	38481	38787	51674	51674					-0.0895363861225178
TEFVVGKDW	9	Unmodified	_TEFVVGKDW_					0	0	0		ENST00000357430.7_1_2:223752596-223765486:+|nuORF	ENST00000357430.7_1_2:223752596-223765486:+|nuORF	ENST00000357430.7_1_2:223752596-223765486:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	540.6775512695312	2	540.771657	1079.52876	-0.96904	-0.00052403	-0.16301	-8.8151E-05	-1.132	-0.00061218	541.2733708760815	72.536	0.35647	73.271	73.073	73.429	0.7354					9	6	2	0	0	0	0.48845	1	27533	27533		37.075	25.434	1	1072000			52934	10981	38482	38788	51675	51675					-0.007822497936558648
TEGAAKIAF	9	Unmodified	_TEGAAKIAF_					0	0	0		nc|ENSG00000104907|Q9NXH9-2|TRMT1;ENSG00000104907|ENST00000357720|TRMT1;ENST00000588813.5_1_19:13226512-13227501:-|nuORF;ENST00000593157.5_1_19:13216299-13227549:-|nuORF;ENST00000590812.5_1_19:13226958-13227549:-|nuORF	nc|ENSG00000104907|Q9NXH9-2|TRMT1;ENST00000593157.5_1_19:13216299-13227549:-|nuORF	nc|ENSG00000104907|Q9NXH9-2|TRMT1	MULTI-SECPEP	A375_MHC_IP_R1	1	454.6476745605469	2	454.247818	906.481082	-0.093568	-4.2503E-05	0.1188	5.3963E-05	0.025228	1.146E-05	454.2476348733081	45.853	0.60875	45.853	45.636	46.245	0					22	11	3	0	0	0	0.11849	1	16075	16075		70.332	46.311	1	2391100			52935	2554;13790	38483	38789	51676	51676					0.024100960061332444
TEGAAKIAF	9	Unmodified	_TEGAAKIAF_					0	0	0		nc|ENSG00000104907|Q9NXH9-2|TRMT1;ENSG00000104907|ENST00000357720|TRMT1;ENST00000588813.5_1_19:13226512-13227501:-|nuORF;ENST00000593157.5_1_19:13216299-13227549:-|nuORF;ENST00000590812.5_1_19:13226958-13227549:-|nuORF	nc|ENSG00000104907|Q9NXH9-2|TRMT1;ENST00000593157.5_1_19:13216299-13227549:-|nuORF	nc|ENSG00000104907|Q9NXH9-2|TRMT1	MULTI-MSMS	A375_MHC_IP_R2	2	454.64788818359375	2	454.247818	906.481082	-0.34294	-0.00015578	-0.25215	-0.00011454	-0.59509	-0.00027032	454.2476547388724	44.941	0.50945	45.71	45.492	46.001	0.7691					16	9	2	0	0	0	0.015356	1	16799	16799		89.401	43.38	1	3160900			52936	2554;13790	38483	38789	51677	51677					0.024100960061332444
TEGAQQGLLQW	11	Unmodified	_TEGAQQGLLQW_					0	0	0		ENST00000473857.5_1_20:36384780-36460672:+|nuORF;nc|ENSG00000132792|Q8WYA6-4|CTNNBL1;ENSG00000132792|ENST00000361383|CTNNBL1;nc|ENSG00000132792|Q8WYA6-2|CTNNBL1	ENST00000473857.5_1_20:36384780-36460672:+|nuORF	ENST00000473857.5_1_20:36384780-36460672:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	616.3640747070312	2	615.809302	1229.60405	-0.29926	-0.00018429	0.56818	0.00034989	0.26892	0.0001656	615.8097061580426	102.92	0.5596	102.92	102.61	103.17	0					15	10	2	0	0	0	0.33052	1	37822	37822		44.392	11.606	1	1417700			52937	4449	38484	38790	51678	51678					-0.0015669233321204956
TEGCRRSCAV	10	Unmodified	_TEGCRRSCAV_					0	0	0			REV__ENST00000311117.7_1_7:104654834-104654945:+|nuORF	REV__ENST00000311117.7_1_7:104654834-104654945:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	541.146240234375	2	541.2475	1080.48045	-0.42565	-0.00023038	2.9757	0.0016106	2.5501	0.0013802	541.2483356459165	39.183	0.30647	39.183	39.085	39.391	0					6	5	2	0	0	0	0.70793	1	13400	13400		8.7454	0.15213	1	1016700	+		52938	23160	38485	38791	51679	51679					-0.05657389976886407
TEGCRRSCAV	10	Unmodified	_TEGCRRSCAV_					0	0	0			REV__ENST00000311117.7_1_7:104654834-104654945:+|nuORF	REV__ENST00000311117.7_1_7:104654834-104654945:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	541.2475	1080.48045	-0.42565	-0.00023038	2.9757	0.0016106	2.5501	0.0013802	541.2483356459165	39.183	0.30647	39.183	39.085	39.391	0	0	0	NaN	8.7454	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1016700	+		52939	23160	38485	38791							-0.05657389976886407
TEGEGMLRFK	10	Unmodified	_TEGEGMLRFK_					0	0	0		ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3	ENSG00000087008|ENST00000356406|ACOX3	ENSG00000087008|ENST00000356406|ACOX3	MULTI-SECPEP	A375_MHC_IP_R1	1	390.5802307128906	3	389.865741	1166.57539	0.30476	0.00011881	2.8045	0.0010934	3.1093	0.0012122	390.2005559930349	20.611	0.25542	20.611	20.435	20.69	0					6	4	2	0	0	0	0.88918	1	5285	5285		1.3296	0	1	354640			52940	1849	38486	38792	51680	51680					-0.0012313323402395326
TEGEMMEEEEL	11	Unmodified	_TEGEMMEEEEL_					0	0	0			REV__nc|ENSG00000198160|Q8N108-20|MIER1	REV__nc|ENSG00000198160|Q8N108-20|MIER1	MULTI-SECPEP	A375_MHC_IP_R2	2	442.6531982421875	3	442.840709	1325.5003	-0.38252	-0.0001694	0.583	0.00025818	0.20048	8.8779E-05	442.84104548436056	31.497	0.51111	32.215	31.923	32.434	0.71857					22	9	3	0	0	0	0.99625	1	11119	11119		4.7159	4.7159	1	5620400	+		52941	22347	38487	38793	51681	51681					-0.14943148338056744
TEGGAGLLI	9	Unmodified	_TEGGAGLLI_					0	0	0			REV__CON__P50448	REV__CON__P50448	MULTI-MSMS	A375_MHC_IP_R1	1	830.8607788085938	1	830.46181	829.454533	-0.57111	-0.00047429	0.39814	0.00033064	-0.17298	-0.00014365	830.4618405293355	86.219	0.50582	86.219	85.921	86.426	0					12	9	2	0	0	0	0.1478	1	31652	31652		42.095	13.608	1	1635900	+	+	52942	15866	38488	38794	51682	51682					0.03298407114800739
TEGGAGLLI	9	Unmodified	_TEGGAGLLI_					0	0	0			REV__CON__P50448	REV__CON__P50448	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	830.46181	829.454533	-0.57111	-0.00047429	0.39814	0.00033064	-0.17298	-0.00014365	830.4618405293355	86.219	0.50582	86.219	85.921	86.426	0	0.14237	5.2478E-05	NaN	42.095	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1635900	+	+	52943	15866	38488	38794							0.03298407114800739
TEGGAGLLI	9	Unmodified	_TEGGAGLLI_					0	0	0			REV__CON__P50448	REV__CON__P50448	MULTI-MATCH	A375_MHC_IP_R2	2		1	830.46181	829.454533	-0.62464	-0.00051874	0.31499	0.00026159	-0.30965	-0.00025715	830.4620214071416	85.198	0.45957	85.935	85.729	86.188	0.73601	-0.14237	-1.6572E-05	NaN	42.095	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2010100	+	+	52944	15866	38488	38794							0.03298407114800739
TEGGEPYRLY	10	Unmodified	_TEGGEPYRLY_					0	0	0		nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	MULTI-SECPEP	A375_MHC_IP_R1	1	593.1827392578125	2	592.782753	1183.55095	-0.35197	-0.00020864	0.1561	9.2531E-05	-0.19588	-0.00011611	592.7828484348362	50.686	0.71098	50.686	50.408	51.119	0					38	13	4	0	0	0	0.020977	1	17950	17950		132.38	132.38	1	14905000			52945	1929	38489	38795	51683	51683					-0.03348070115907831
TEGGEPYRLY	10	Unmodified	_TEGGEPYRLY_					0	0	0		nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	MULTI-SECPEP	A375_MHC_IP_R2	2	593.1824340820312	2	592.782753	1183.55095	-0.79084	-0.00046879	0.38061	0.00022562	-0.41022	-0.00024317	592.7829351053801	50.022	0.7137	50.776	50.394	51.108	0.75406					41	13	4	0	0	0	0.025593	1	18788	18788		121.35	86.944	1	14855000			52946	1929	38489	38795	51684	51684					-0.03348070115907831
TEGGFEGPGSY	11	Unmodified	_TEGGFEGPGSY_					0	0	0		GRIP2|p.G797E|1|0.5|ENSG00000144596|chr3:14507680-14507680|C/T|missense_variant	GRIP2|p.G797E|1|0.5|ENSG00000144596|chr3:14507680-14507680|C/T|missense_variant	GRIP2|p.G797E|1|0.5|ENSG00000144596|chr3:14507680-14507680|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	552.1484985351562	2	550.730186	1099.44582	-0.99127	-0.00054592	0.17785	9.7949E-05	-0.81342	-0.00044798	550.730224163789	37.951	0.71661	38.725	38.382	39.098	0.77451					41	13	4	0	0	0	0.67989	1	13821	13821		17.113	5.4726	1	18045000			52947	14088	38490	38796	51685	51685					-0.09992611312304689
TEGGLRVP	8	Unmodified	_TEGGLRVP_					0	0	0			REV__ENSG00000130734|ENST00000309469|ATG4D	REV__ENSG00000130734|ENST00000309469|ATG4D	MULTI-MSMS	A375_MHC_IP_R2	2	415.2713317871094	2	414.732335	827.450116	-0.2395	-9.9329E-05	-0.24496	-0.00010159	-0.48446	-0.00020092	414.73230261167606	30.014	0.91294	30.713	30.434	31.347	0.69872					45	17	4	0	0	0	0.77603	1	10777	10777		9.3474	0	1	44309000	+		52948	18561	38491	38797	51686	51686					0.029489426918985373
TEGIIMKDF	9	Unmodified	_TEGIIMKDF_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-SECPEP	A375_MHC_IP_R1	1	527.6678466796875	2	527.267893	1052.52123	-0.40166	-0.00021178	2.5161	0.0013267	2.1144	0.0011149	527.2684910863115	72.661	0.70975	72.661	72.321	73.031	0					19	13	2	0	0	0	0.27114	1	26480	26480		45.74	20.341	1	2561300			52949	2654	38492	38798	51687	51687					-0.0029272538561144756
TEGILKDFNDY	11	Unmodified	_TEGILKDFNDY_					0	0	0		tr|U7T2I3|U7T2I3_FUSNUCobyricacidsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobQPE=3SV=1	tr|U7T2I3|U7T2I3_FUSNUCobyricacidsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobQPE=3SV=1	tr|U7T2I3|U7T2I3_FUSNUCobyricacidsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobQPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	439.6137390136719	3	438.878592	1313.61395	-0.58279	-0.00025577	4.0737	0.0017878	3.4909	0.0015321	439.21394294904775	19.028	0.53321	19.631	19.452	19.986	0.60308					13	10	2	0	0	0	0.99732	1	5821	5821		4.1166	0.79699	1	4357900			52950	29934	38493	38799	51688	51688					-0.03031549118509247
TEGKDRKLFE	10	Unmodified	_TEGKDRKLFE_					0	0	0			REV__ENST00000543940.1_1_12:124114818-124118191:-|nuORF	REV__ENST00000543940.1_1_12:124114818-124118191:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	408.9156799316406	3	408.21906	1221.63535	-0.33377	-0.00013625	-3.1054	-0.0012677	-3.4392	-0.0014039	408.55134824672785	22.712	0.25483	23.342	23.215	23.47	0.63014					6	4	2	0	0	0	0.91932	1	7244	7244		11.518	4.0408	1	521670	+		52951	17669	38494	38800	51689	51689					0.03339880700832509
TEGKRYRIY	9	Unmodified	_TEGKRYRIY_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	MULTI-SECPEP	A375_MHC_IP_R2	2	592.59130859375	2	593.32238	1184.63021	-0.7681	-0.00045573	0.43805	0.0002599	-0.33005	-0.00019583	593.8240823547399	50.176	0.20236	50.93	50.804	51.006	0.75406					5	3	2	0	0	0	0.65246	1	18855	18855		15.847	11.903	1	1690200			52952	5090	38495	38801	51690	51690					0.04527621628903944
TEGNTPLHL	9	Unmodified	_TEGNTPLHL_					0	0	0		ENSG00000101843|ENST00000217958|PSMD10	ENSG00000101843|ENST00000217958|PSMD10	ENSG00000101843|ENST00000217958|PSMD10	MULTI-MSMS	A375_MHC_IP_R1	1	491.65313720703125	2	491.253631	980.49271	-0.20819	-0.00010227	0.016434	8.0732E-06	-0.19175	-9.4199E-05	491.25356294468	47.624	0.80751	47.624	47.315	48.122	0					30	15	3	0	0	0	0.018261	1	16758	16758		85.642	6.0452	1	5164100			52953	2326	38496	38802	51691	51691					0.0016829302946916869
TEGNTPLHL	9	Unmodified	_TEGNTPLHL_					0	0	0		ENSG00000101843|ENST00000217958|PSMD10	ENSG00000101843|ENST00000217958|PSMD10	ENSG00000101843|ENST00000217958|PSMD10	MULTI-MSMS	A375_MHC_IP_R2	2	491.6534118652344	2	491.253631	980.49271	-0.35791	-0.00017582	0.10323	5.0711E-05	-0.25468	-0.00012511	491.2535736002235	46.787	0.66241	47.548	47.155	47.817	0.76128					30	12	3	0	0	0	0.029064	1	17489	17489		75.761	9.3041	1	4979000			52954	2326	38496	38802	51692	51692					0.0016829302946916869
TEGPDFSSPSV	11	Unmodified	_TEGPDFSSPSV_					0	0	0		SYTL1|p.P158S|1|0.31|ENSG00000142765|chr1:27349092-27349092|C/T|missense_variant	SYTL1|p.P158S|1|0.31|ENSG00000142765|chr1:27349092-27349092|C/T|missense_variant	SYTL1|p.P158S|1|0.31|ENSG00000142765|chr1:27349092-27349092|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	562.1502075195312	2	561.751118	1121.48768	-0.5998	-0.00033694	-0.095097	-5.3421E-05	-0.6949	-0.00039036	561.7505503827331	31.748	0.55672	32.484	32.249	32.806	0.73691					24	10	4	0	0	0	0.69231	1	11268	11268		16.149	1.3108	1	3699300			52955	29286	38497	38803	51693	51693					-0.06820055623779808
TEGPGFGSHSY	11	Unmodified	_TEGPGFGSHSY_					0	0	0		ENST00000299871.9_2_19:58144611-58146010:+|nuORF;ENST00000542008.1_1_19:58144599-58145500:+|nuORF	ENST00000299871.9_2_19:58144611-58146010:+|nuORF	ENST00000299871.9_2_19:58144611-58146010:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	570.1433715820312	2	569.743628	1137.4727	-0.1324	-7.5432E-05	-0.19762	-0.00011259	-0.33001	-0.00018802	569.7435962195962	106.5	0.66676	106.5	106.11	106.78	0					21	12	2	0	0	0	0.73078	1	39140	39140		8.1555	0.24537	1	1664700			52956	10531	38498	38804	51694	51694					-0.09053502701112848
TEGPGFGSHSY	11	Unmodified	_TEGPGFGSHSY_					0	0	0		ENST00000299871.9_2_19:58144611-58146010:+|nuORF;ENST00000542008.1_1_19:58144599-58145500:+|nuORF	ENST00000299871.9_2_19:58144611-58146010:+|nuORF	ENST00000299871.9_2_19:58144611-58146010:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	569.743628	1137.4727	-0.1324	-7.5432E-05	-0.19762	-0.00011259	-0.33001	-0.00018802	569.7435962195962	106.5	0.66676	106.5	106.11	106.78	0	0.045783	0.0002096	NaN	8.1555	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1664700			52957	10531	38498	38804							-0.09053502701112848
TEGQDNQEGP	10	Unmodified	_TEGQDNQEGP_					0	0	0			REV__ENSG00000184677|ENST00000375647|ZBTB40	REV__ENSG00000184677|ENST00000375647|ZBTB40	MSMS	A375_MHC_IP_R1	1	537.6903076171875	2	537.72035	1073.42615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.144	1	32.144	31.644	32.644	0								0	0	0	0.15353	1	10358	10358		9.3831	0.78985	1		+		52958	21832	38499	38805	51695	51695					-0.10762987323073503
TEGRHNRKV	9	Unmodified	_TEGRHNRKV_					0	0	0			REV__nc|ENSG00000138376|Q99728-2|BARD1	REV__nc|ENSG00000138376|Q99728-2|BARD1	MULTI-SECPEP	A375_MHC_IP_R2	2	549.132568359375	2	548.802146	1095.58974	-0.99031	-0.00054348	-2.27	-0.0012458	-3.2603	-0.0017893	549.3025220995929	50.176	0.30379	50.93	50.702	51.006	0.75406					7	5	2	0	0	0	0.75466	1	18844	18844		1.8442	0	1	755470	+		52959	19091	38500	38806	51696	51696					0.045767000291334625
TEGRYSLNF	9	Unmodified	_TEGRYSLNF_					0	0	0		nc|ENSG00000211792|A0A0A6YYC5|TRAV14DV4	nc|ENSG00000211792|A0A0A6YYC5|TRAV14DV4	nc|ENSG00000211792|A0A0A6YYC5|TRAV14DV4	MULTI-SECPEP	A375_MHC_IP_R1	1	543.679443359375	2	543.764363	1085.51417	-0.55093	-0.00029958	0.23805	0.00012944	-0.31288	-0.00017013	543.764531771655	63.664	0.6133	63.664	63.427	64.04	0					23	11	3	0	0	0	0.41434	1	22979	22979		32.786	4.2988	1	2776300			52960	14881	38501	38807	51697	51697					-0.025163219418118388
TEGSGGDF	8	Unmodified	_TEGSGGDF_					0	0	0			REV__nc|ENSG00000123106|Q7Z6B0-3|CCDC91	REV__nc|ENSG00000123106|Q7Z6B0-3|CCDC91	MSMS	A375_MHC_IP_R1	1	385.24884033203125	2	385.153583	768.292613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.389	1	47.389	46.889	47.889	0								0	0	0	0.16876	1	16667	16667		2.5775	0	1		+		52961	18231	38502	38808	51698	51698					-0.1008018163813631
TEGTINIAKVM	11	Unmodified	_TEGTINIAKVM_					0	0	0			REV__TTN|p.A2157T|1|0.19|ENSG00000155657|chr2:178775395-178775395|C/T|missense_variant	REV__TTN|p.A2157T|1|0.19|ENSG00000155657|chr2:178775395-178775395|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	392.9087829589844	3	392.88128	1175.62201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.669	1	41.669	41.169	42.169	0								0	0	0	0.16172	1	14401	14401		9.7643	1.8189	1		+		52962	28929	38503	38809	51699	51699					0.041223065972417317
TEGTLDPQAPD	11	Unmodified	_TEGTLDPQAPD_					0	0	0		ENSG00000121101|ENST00000349033|TEX14;nc|ENSG00000121101|Q8IWB6-2|TEX14;nc|ENSG00000121101|Q8IWB6|TEX14;TEX14|p.T1009Gfs*8|1|0.04|ENSG00000121101|chr17:58585864-58585865|-/CATTGTTGCC|frameshift_variant	ENSG00000121101|ENST00000349033|TEX14	ENSG00000121101|ENST00000349033|TEX14	MULTI-MSMS	A375_MHC_IP_R1	1	572.1611938476562	2	572.26185	1142.50915	-0.24754	-0.00014166	3.2931	0.0018845	3.0456	0.0017429	572.2638522275164	33.536	1.1135	33.536	32.684	33.798	0					30	21	2	0	0	0	0.62292	1	10957	10957		21.537	3.3906	1	6016900			52963	3708	38504	38810	51700	51700					-0.05640670595107622
TEGVFPWI	8	Unmodified	_TEGVFPWI_					0	0	0		ENST00000279068.10_1_20:60709570-60709771:+|nuORF	ENST00000279068.10_1_20:60709570-60709771:+|nuORF	ENST00000279068.10_1_20:60709570-60709771:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	474.00848388671875	2	474.744911	947.475269	-0.2849	-0.00013525	-0.50834	-0.00024133	-0.79324	-0.00037658	474.74438232149646	42.917	0.96562	42.917	42.689	43.655	0					21	18	2	0	0	0	0.93416	1	14920	14920		20.871	6.2895	1	1213700			52964	10414	38505	38811	51701	51701					-0.0005700250553672959
TEGVPQVYY	9	Unmodified	_TEGVPQVYY_					0	0	0		ENSG00000133275|ENST00000255641|CSNK1G2	ENSG00000133275|ENST00000255641|CSNK1G2	ENSG00000133275|ENST00000255641|CSNK1G2	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6685180664062	2	528.25584	1054.49713	-0.79586	-0.00042042	-0.58377	-0.00030838	-1.3796	-0.0007288	528.2554597127232	71.807	0.70765	72.541	72.264	72.971	0.73421					20	13	2	0	0	0	0.69504	1	27270	27270		18.135	18.135	1	2350200			52965	4500	38506	38812	51702	51702					-0.027942425476112476
TEHAEGEHTV	10	Unmodified	_TEHAEGEHTV_					0	0	0		nc|ENSG00000134940|P26436-7|ACRV1;nc|ENSG00000134940|P26436-3|ACRV1;nc|ENSG00000134940|P26436-2|ACRV1;ENSG00000134940|ENST00000533904|ACRV1	nc|ENSG00000134940|P26436-7|ACRV1	nc|ENSG00000134940|P26436-7|ACRV1	MULTI-MSMS	A375_MHC_IP_R2	2	555.6463012695312	2	555.246535	1108.47852	-0.71115	-0.00039486	-0.18258	-0.00010138	-0.89373	-0.00049624	555.2465420131842	88.237	0.65926	88.969	88.671	89.331	0.7318					20	12	2	0	0	0	0.70496	1	33573	33573		10.074	0.6908	1	2023600			52966	4628	38507	38813	51703	51703					-0.07138404189458925
TEHAFSHSSY	10	Unmodified	_TEHAFSHSSY_					0	0	0			REV__ENST00000375290.6_3_9:98215758-98232201:-|nuORF	REV__ENST00000375290.6_3_9:98215758-98232201:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	584.1607055664062	2	583.249077	1164.4836	0.29561	0.00017241	-1.2712	-0.00074143	-0.9756	-0.00056902	583.2485370288755	69.411	0.50806	69.411	69.224	69.732	0					22	9	3	0	0	0	0.69306	1	25186	25186		13.906	5.1606	1	3126300	+		52967	21932	38508	38814	51704	51704					-0.09206100326855449
TEHDLLGTEAW	11	Unmodified	_TEHDLLGTEAW_					0	0	0		ENST00000527144.5_1_8:145138126-145139470:+|nuORF;nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1	ENST00000527144.5_1_8:145138126-145139470:+|nuORF	ENST00000527144.5_1_8:145138126-145139470:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	636.7459716796875	2	636.298767	1270.58298	-0.5086	-0.00032362	1.043	0.00066365	0.53438	0.00034002	636.2992526009564	82.268	0.50836	82.268	82.113	82.622	0					13	9	2	0	0	0	0.31356	1	30079	30079		45.7	15.475	1	1425300			52968	9200	38509	38815	51705	51705					-0.04148702432758
TEHEKRCTPQ	10	Unmodified	_TEHEKRCTPQ_					0	0	0			REV__ENSG00000143278|ENST00000367412|F13B	REV__ENSG00000143278|ENST00000367412|F13B	MULTI-SECPEP	A375_MHC_IP_R1	1	410.5953063964844	3	410.19615	1227.56662	0.31782	0.00013037	0.365	0.00014972	0.68282	0.00028009	410.19687404305535	22.833	0.65749	22.833	22.317	22.974	0					18	12	3	0	0	0	0.81654	1	6213	6213		15.739	2.866	1	2207600	+		52969	19343	38510	38816	51706	51706					-0.03806106870501935
TEHEPTKMFY	10	Oxidation (M)	_TEHEPTKM(Oxidation (M))FY_		TEHEPTKM(1)FY		TEHEPTKM(130)FY	0	0	1		nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;PBRM1|p.E1214Rfs*6|1|0.21|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant;PBRM1|p.S1391Efs*5|1|0.7|ENSG00000163939|chr3:52561877-52561884|ATCTCACT/-|frameshift_variant	nc|ENSG00000163939|Q86U86-4|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	MULTI-MSMS	A375_MHC_IP_R1	1	433.92877197265625	3	433.528906	1297.56489	-0.34479	-0.00014948	-0.10882	-4.7178E-05	-0.45362	-0.00019666	433.5289135475721	25.529	1.7211	25.529	25.306	27.027	0					96	33	4	0	0	0	0.0091722	2	7442	7442;7706		128.87	110.15	1	27433000			52970	14724	38511	38817	51707;51708	51707		470			-0.07199160679124361
TEHEPTKMFY	10	Oxidation (M)	_TEHEPTKM(Oxidation (M))FY_		TEHEPTKM(1)FY		TEHEPTKM(110)FY	0	0	1		nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;PBRM1|p.E1214Rfs*6|1|0.21|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant;PBRM1|p.S1391Efs*5|1|0.7|ENSG00000163939|chr3:52561877-52561884|ATCTCACT/-|frameshift_variant	nc|ENSG00000163939|Q86U86-4|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	MULTI-MSMS	A375_MHC_IP_R1	1	650.1898803710938	2	649.789721	1297.56489	-0.50786	-0.00033	-0.22862	-0.00014855	-0.73648	-0.00047856	650.2910044152997	25.549	0.96508	25.549	25.306	26.271	0					44	18	3	0	0	0	0.011657	2	7490	7484;7490		114.5	86.868	1	5694400			52971	14724	38511	38817	51709;51710	51710		470			-0.07199160679124361
TEHEPTKMFY	10	Oxidation (M)	_TEHEPTKM(Oxidation (M))FY_		TEHEPTKM(1)FY		TEHEPTKM(96)FY	0	0	1		nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;PBRM1|p.E1214Rfs*6|1|0.21|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant;PBRM1|p.S1391Efs*5|1|0.7|ENSG00000163939|chr3:52561877-52561884|ATCTCACT/-|frameshift_variant	nc|ENSG00000163939|Q86U86-4|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	MULTI-MSMS	A375_MHC_IP_R2	2	433.9284362792969	3	433.528906	1297.56489	-0.6823	-0.0002958	0.044413	1.9254E-05	-0.63789	-0.00027654	433.52893456875023	24.958	1.6268	25.602	25.314	26.941	0.64368					78	31	3	0	0	0	0.0049421	2	8260	8260;8521		96.034	84.516	1	25843000			52972	14724	38511	38817	51711;51712	51711		470			-0.07199160679124361
TEHEPTKMFY	10	Oxidation (M)	_TEHEPTKM(Oxidation (M))FY_		TEHEPTKM(1)FY		TEHEPTKM(91)FY	0	0	1		nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;PBRM1|p.E1214Rfs*6|1|0.21|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant;PBRM1|p.S1391Efs*5|1|0.7|ENSG00000163939|chr3:52561877-52561884|ATCTCACT/-|frameshift_variant	nc|ENSG00000163939|Q86U86-4|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	MULTI-MSMS	A375_MHC_IP_R2	2	650.189453125	2	649.789721	1297.56489	-1.1441	-0.00074343	0.083336	5.4151E-05	-1.0608	-0.00068928	649.789672693813	25.09	1.2225	25.734	25.414	26.637	0.64368					34	23	3	0	0	0	0.012014	1	8317	8317		91.085	65.685	1	5661300			52973	14724	38511	38817	51713	51713		470			-0.07199160679124361
TEHEPTKMFY	10	Unmodified	_TEHEPTKMFY_					0	0	0		nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;PBRM1|p.E1214Rfs*6|1|0.21|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant;PBRM1|p.S1391Efs*5|1|0.7|ENSG00000163939|chr3:52561877-52561884|ATCTCACT/-|frameshift_variant	nc|ENSG00000163939|Q86U86-4|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	MULTI-MSMS	A375_MHC_IP_R1	1	428.5975036621094	3	428.197268	1281.56997	-0.41221	-0.00017651	0.2551	0.00010923	-0.15711	-6.7275E-05	428.1974173767674	36.55	0.55783	36.55	36.287	36.845	0					31	10	4	0	0	0	0.011669	1	12214	12214		99.864	81.491	1	14432000			52974	14724	38511	38818	51714	51714					-0.05954856816492793
TEHEPTKMFY	10	Unmodified	_TEHEPTKMFY_					0	0	0		nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;PBRM1|p.E1214Rfs*6|1|0.21|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant;PBRM1|p.S1391Efs*5|1|0.7|ENSG00000163939|chr3:52561877-52561884|ATCTCACT/-|frameshift_variant	nc|ENSG00000163939|Q86U86-4|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	MULTI-SECPEP	A375_MHC_IP_R1	1	642.1919555664062	2	641.792263	1281.56997	-0.83204	-0.000534	0.082207	5.276E-05	-0.74983	-0.00048124	641.7923886643504	36.573	0.40617	36.573	36.339	36.745	0					15	7	3	0	0	0	0.49165	1	12279	12279		49.527	24.128	1	4258000			52975	14724	38511	38818	51715	51715					-0.05954856816492793
TEHEPTKMFY	10	Unmodified	_TEHEPTKMFY_					0	0	0		nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;PBRM1|p.E1214Rfs*6|1|0.21|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant;PBRM1|p.S1391Efs*5|1|0.7|ENSG00000163939|chr3:52561877-52561884|ATCTCACT/-|frameshift_variant	nc|ENSG00000163939|Q86U86-4|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	MULTI-MSMS	A375_MHC_IP_R2	2	428.59716796875	3	428.197268	1281.56997	-0.38917	-0.00016664	0.11847	5.0731E-05	-0.2707	-0.00011591	428.197338997447	35.697	0.60873	36.461	36.183	36.792	0.76338					39	11	4	0	0	0	0.0019766	1	12920	12920		122.57	100.77	1	22696000			52976	14724	38511	38818	51716	51716					-0.05954856816492793
TEHEPTKMFY	10	Unmodified	_TEHEPTKMFY_					0	0	0		nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;PBRM1|p.E1214Rfs*6|1|0.21|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant;PBRM1|p.S1391Efs*5|1|0.7|ENSG00000163939|chr3:52561877-52561884|ATCTCACT/-|frameshift_variant	nc|ENSG00000163939|Q86U86-4|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	MULTI-MSMS	A375_MHC_IP_R2	2	642.1920166015625	2	641.792263	1281.56997	-0.9186	-0.00058955	-0.072511	-4.6537E-05	-0.99111	-0.00063609	641.7923600461758	35.653	0.50726	36.416	36.183	36.69	0.76338					22	9	3	0	0	0	3.2397E-05	1	12955	12955		166.77	134.46	1	4424800			52977	14724	38511	38818	51717	51717					-0.05954856816492793
TEHFTFTL	8	Unmodified	_TEHFTFTL_					0	0	0		PSG4|p.G136E|1|0.38|ENSG00000243137|chr19:43203909-43203909|C/T|missense_variant	PSG4|p.G136E|1|0.38|ENSG00000243137|chr19:43203909-43203909|C/T|missense_variant	PSG4|p.G136E|1|0.38|ENSG00000243137|chr19:43203909-43203909|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	498.6456604003906	2	498.245275	994.475997	-0.35207	-0.00017542	1.0074	0.00050195	0.65537	0.00032654	498.245824689854	103.72	0.71214	103.72	103.37	104.08	0					20	13	3	0	0	0	0.5503	2	38097	38097;38143		46.921	10.794	1	1801500			52978	15242	38512	38819	51718;51719	51718					-0.02146207856469573
TEHFTFTL	8	Unmodified	_TEHFTFTL_					0	0	0		PSG4|p.G136E|1|0.38|ENSG00000243137|chr19:43203909-43203909|C/T|missense_variant	PSG4|p.G136E|1|0.38|ENSG00000243137|chr19:43203909-43203909|C/T|missense_variant	PSG4|p.G136E|1|0.38|ENSG00000243137|chr19:43203909-43203909|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	498.64508056640625	2	498.245275	994.475997	-0.50828	-0.00025325	1.0538	0.00052507	0.54556	0.00027182	498.2456487155505	102.79	1.0681	103.56	103.33	104.4	0.76428					24	20	2	0	0	0	0.68907	1	38949	38949		38.151	4.0487	1	1794900			52979	15242	38512	38819	51720	51720					-0.02146207856469573
TEHFTFTL	8	Unmodified	_TEHFTFTL_					0	0	0		PSG4|p.G136E|1|0.38|ENSG00000243137|chr19:43203909-43203909|C/T|missense_variant	PSG4|p.G136E|1|0.38|ENSG00000243137|chr19:43203909-43203909|C/T|missense_variant	PSG4|p.G136E|1|0.38|ENSG00000243137|chr19:43203909-43203909|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	498.245275	994.475997	-0.50828	-0.00025325	1.0538	0.00052507	0.54556	0.00027182	498.2456487155505	102.79	1.0681	103.56	103.33	104.4	0.76428	-0.078155	3.4236E-05	NaN	46.921	24	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1794900			52980	15242	38512	38819							-0.02146207856469573
TEHIKLNYP	9	Unmodified	_TEHIKLNYP_					0	0	0			REV__nc|ENSG00000250312|Q3SXZ3-2|ZNF718	REV__nc|ENSG00000250312|Q3SXZ3-2|ZNF718	MULTI-MSMS	A375_MHC_IP_R1	1	372.6017761230469	3	372.201229	1113.58186	0.038601	1.4367E-05	-2.0663	-0.00076907	-2.0277	-0.0007547	372.2017133999604	41.254	0.76084	41.254	40.913	41.674	0					34	14	4	0	0	0	0.70411	1	14222	14222		6.6304	3.0433	1	5527200	+		52981	22841	38513	38820	51721	51721					0.02961127988987755
TEHKKKQR	8	Unmodified	_TEHKKKQR_					0	0	0		ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	MULTI-SECPEP	A375_MHC_IP_R1	1	528.185302734375	2	527.809439	1053.60433	-0.80932	-0.00042717	0.28481	0.00015032	-0.52452	-0.00027684	527.8095215054368	23.488	0.25464	23.488	23.33	23.584	0					8	4	2	0	0	0	0.972	1	6495	6495		4.3292	0.38484	1	2259200			52982	8712	38514	38821	51722	51722					0.07966772177269377
TEHLHPDLW	9	Unmodified	_TEHLHPDLW_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000460132.5_1_7:100853286-100853899:-|nuORF;ENST00000487563.1_1_7:100853563-100853710:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-SECPEP	A375_MHC_IP_R1	1	383.27813720703125	3	383.189212	1146.54581	0.40198	0.00015404	0.096739	3.7069E-05	0.49872	0.0001911	383.52357354755	53.682	0.71056	53.682	53.403	54.113	0					17	13	2	0	0	0	0.34746	1	19123	19123		45.7	43.793	1	4401500			52983	2688	38515	38822	51723	51723					-0.021603291878591335
TEHLHPDLW	9	Unmodified	_TEHLHPDLW_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000460132.5_1_7:100853286-100853899:-|nuORF;ENST00000487563.1_1_7:100853563-100853710:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-SECPEP	A375_MHC_IP_R1	1	574.1691284179688	2	574.28018	1146.54581	-0.13313	-7.6454E-05	0.139	7.9823E-05	0.005867	3.3693E-06	574.2803309452565	53.641	0.40749	53.641	53.453	53.861	0					18	7	3	0	0	0	0.0575	1	19177	19177		108	88.74	1	3543600			52984	2688	38515	38822	51724	51724					-0.021603291878591335
TEHLHPDLW	9	Unmodified	_TEHLHPDLW_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000460132.5_1_7:100853286-100853899:-|nuORF;ENST00000487563.1_1_7:100853563-100853710:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	A375_MHC_IP_R2	2	574.714111328125	2	574.28018	1146.54581	-0.71175	-0.00040874	1.3686	0.00078595	0.65683	0.0003772	574.2815074652702	52.752	0.91072	53.503	52.931	53.842	0.75105					28	17	3	0	0	0	0.018546	2	19881	19881;19931		85.272	60.598	1	2771200			52985	2688	38515	38822	51725;51726	51725					-0.021603291878591335
TEHLHPDLW	9	Unmodified	_TEHLHPDLW_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000460132.5_1_7:100853286-100853899:-|nuORF;ENST00000487563.1_1_7:100853563-100853710:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-SECPEP	A375_MHC_IP_R2	2	383.58917236328125	3	383.189212	1146.54581	-0.60941	-0.00023352	0.27888	0.00010686	-0.33053	-0.00012666	383.1892957824984	52.778	0.50699	53.529	53.335	53.842	0.75105					16	9	2	0	0	0	0.34746	1	19936	19936		45.7	39.968	1	2426300			52986	2688	38515	38822	51727	51727					-0.021603291878591335
TEHLLMKFS	9	Unmodified	_TEHLLMKFS_					0	0	0		nc|ENSG00000288705|P35504-2|UGT1A5;nc|ENSG00000288705|P35504|UGT1A5	nc|ENSG00000288705|P35504-2|UGT1A5	nc|ENSG00000288705|P35504-2|UGT1A5	MULTI-SECPEP	A375_MHC_IP_R1	1	369.4445495605469	3	369.195198	1104.56377	0.19947	7.3643E-05	-0.079534	-2.9364E-05	0.11994	4.4279E-05	369.19510225695626	27.264	0.35475	27.264	27.128	27.482	0					15	6	3	0	0	0	0.78348	1	8257	8257		2.4985	1.5362	1	3639700			52987	14950	38516	38823	51728	51728					0.015666697426240717
TEHPKINEW	9	Unmodified	_TEHPKINEW_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	A375_MHC_IP_R1	1	384.6083068847656	3	385.192734	1152.55637	0.1699	6.5446E-05	0.0028684	1.1049E-06	0.17277	6.6551E-05	385.19270243907715	31.195	0.86086	31.195	30.806	31.667	0					47	16	4	0	0	0	0.71071	1	10032	10032		19.362	3.6233	1	20890000			52988	9114	38517	38824	51729	51729					-0.013803465334149223
TEHPKINEW	9	Unmodified	_TEHPKINEW_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R2	2	385.5927429199219	3	385.192734	1152.55637	-0.13613	-5.2435E-05	-0.040891	-1.5751E-05	-0.17702	-6.8186E-05	385.1927116970047	30.422	0.80909	31.14	30.809	31.618	0.71857					37	15	4	0	0	0	0.22528	1	10659	10659		27.223	15.048	1	27984000			52989	9114	38517	38824	51730	51730					-0.013803465334149223
TEHPKINEW	9	Unmodified	_TEHPKINEW_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	A375_MHC_IP_R2	2	577.6851196289062	2	577.285463	1152.55637	-0.18265	-0.00010544	2.3785	0.0013731	2.1958	0.0012676	577.2870402581782	30.472	0.85837	31.191	30.911	31.77	0.71857					30	16	2	0	0	0	0.042544	1	10694	10694		121.35	87.901	1	16076000			52990	9114	38517	38824	51731	51731					-0.013803465334149223
TEHQRICPGE	10	Unmodified	_TEHQRICPGE_					0	0	0		nc|ENSG00000158691|O43309-2|ZSCAN12;ENSG00000158691|ENST00000684592|ZSCAN12	nc|ENSG00000158691|O43309-2|ZSCAN12	nc|ENSG00000158691|O43309-2|ZSCAN12	MULTI-MSMS	A375_MHC_IP_R2	2	585.671875	2	585.272029	1168.52951	-0.94459	-0.00055284	0.93131	0.00054507	-0.013283	-7.7745E-06	585.2725323705841	25.662	0.40695	26.321	26.144	26.551	0.65992					10	7	2	0	0	0	0.55789	1	8632	8632		24.021	6.9077	1	2615300			52991	6323	38518	38825	51732	51732					-0.0480177841625391
TEHQRICPGE	10	Unmodified	_TEHQRICPGE_					0	0	0		nc|ENSG00000158691|O43309-2|ZSCAN12;ENSG00000158691|ENST00000684592|ZSCAN12	nc|ENSG00000158691|O43309-2|ZSCAN12	nc|ENSG00000158691|O43309-2|ZSCAN12	MULTI-MATCH	A375_MHC_IP_R1	1		2	585.272029	1168.52951	-0.57746	-0.00033797	1.3062	0.00076448	0.72874	0.00042651	585.2728438774316	26.246	0.35572	26.246	26.068	26.423	0	-0.037518	0.00035285	NaN	24.021	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2620900			52992	6323	38518	38825							-0.0480177841625391
TEHQVVSSDF	10	Unmodified	_TEHQVVSSDF_					0	0	0		ENSG00000111640|ENST00000229239|GAPDH;nc|ENSG00000111640|P04406-2|GAPDH;ENST00000466525.1_1_12:6646524-6647333:+|nuORF;ENST00000452570.1_1_X:39646388-39646742:-|nuORF	ENSG00000111640|ENST00000229239|GAPDH	ENSG00000111640|ENST00000229239|GAPDH	MULTI-MSMS	A375_MHC_IP_R1	1	575.1648559570312	2	574.76456	1147.51457	-0.27374	-0.00015734	-0.090169	-5.1826E-05	-0.36391	-0.00020916	574.7645968279879	36.99	0.50548	36.99	36.795	37.301	0					19	9	3	0	0	0	0.012014	1	12454	12454		91.085	61.244	1	3796300			52993	3003	38519	38826	51733	51733					-0.053289470125946536
TEHQVVSSDF	10	Unmodified	_TEHQVVSSDF_					0	0	0		ENSG00000111640|ENST00000229239|GAPDH;nc|ENSG00000111640|P04406-2|GAPDH;ENST00000466525.1_1_12:6646524-6647333:+|nuORF;ENST00000452570.1_1_X:39646388-39646742:-|nuORF	ENSG00000111640|ENST00000229239|GAPDH	ENSG00000111640|ENST00000229239|GAPDH	MULTI-MSMS	A375_MHC_IP_R2	2	575.1641845703125	2	574.76456	1147.51457	-0.34229	-0.00019674	0.92339	0.00053073	0.5811	0.00033399	574.7657702093472	36.235	0.76488	37.006	36.443	37.207	0.7709					23	14	3	0	0	0	0.024099	2	13175	13175;13225		83.278	3.4625	1	4624700			52994	3003	38519	38826	51734;51735	51734					-0.053289470125946536
TEHSVLIHEYY	11	Unmodified	_TEHSVLIHEYY_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-MSMS	A375_MHC_IP_R2	2	464.6258850097656	3	464.226103	1389.65648	-0.89674	-0.00041629	0.025227	1.1711E-05	-0.87151	-0.00040458	464.22610159475687	60.885	0.96388	61.63	61.006	61.97	0.74503					41	18	3	0	0	0	0.73502	1	23013	23013		4.1166	1.2733	1	2546100			52995	7956	38520	38827	51736	51736					-0.02276153990237617
TEHSVLIHEYY	11	Unmodified	_TEHSVLIHEYY_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	464.226103	1389.65648	-0.25901	-0.00012024	-0.060199	-2.7946E-05	-0.31921	-0.00014818	464.22598901900255	61.448	1.0199	61.448	60.871	61.891	0	-0.091028	-5.954E-05	NaN	4.1166	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2359300			52996	7956	38520	38827							-0.02276153990237617
TEHSVLIHEYY	11	Unmodified	_TEHSVLIHEYY_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	464.226103	1389.65648	-0.89674	-0.00041629	0.025227	1.1711E-05	-0.87151	-0.00040458	464.22610159475687	60.885	0.96388	61.63	61.006	61.97	0.74503	0.091028	5.943E-05	NaN	4.1166	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2546100			52997	7956	38520	38827							-0.02276153990237617
TEHTPKNILI	10	Unmodified	_TEHTPKNILI_					0	0	0		tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	583.6717529296875	2	583.332413	1164.65027	-0.36101	-0.00021059	0.31641	0.00018457	-0.044601	-2.6017E-05	583.3323613775326	65.626	0.30566	65.626	65.411	65.717	0					7	5	2	0	0	0	0.92957	1	23776	23776		6.2058	0	1	704400			52998	29749	38521	38828	51737	51737					0.07453372568875238
TEHVFTDPA	9	Unmodified	_TEHVFTDPA_					0	0	0		MAPK8IP3|p.P931Rfs*68|1|0.5|ENSG00000138834|chr16:1766382-1766382|C/-|frameshift_variant;nc|ENSG00000138834|Q9UPT6|MAPK8IP3;ENSG00000138834|ENST00000610761|MAPK8IP3	MAPK8IP3|p.P931Rfs*68|1|0.5|ENSG00000138834|chr16:1766382-1766382|C/-|frameshift_variant	MAPK8IP3|p.P931Rfs*68|1|0.5|ENSG00000138834|chr16:1766382-1766382|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	509.13739013671875	2	508.737814	1015.46108	-0.093136	-4.7382E-05	-0.2539	-0.00012917	-0.34704	-0.00017655	508.7377309871868	45.436	0.45332	45.436	45.132	45.585	0					15	8	2	0	0	0	0.62767	1	15902	15902		16.942	2.104	1	2022100			52999	5042	38522	38829	51738	51738					-0.0460369972446415
TEHWLVRIY	9	Unmodified	_TEHWLVRIY_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000526364.1_1_11:125488416-125491330:+|nuORF	ENSG00000134910|ENST00000392708|STT3A	ENSG00000134910|ENST00000392708|STT3A	MULTI-MSMS	A375_MHC_IP_R1	1	406.62066650390625	3	406.220624	1215.64004	-0.31656	-0.00012859	0.28929	0.00011751	-0.027269	-1.1077E-05	406.2207305329036	73.761	0.86106	73.761	73.437	74.298	0					42	16	4	0	0	0	0.019126	2	26819	26819;26844		84.522	64.896	1	8310300			53000	4626	38523	38830	51739;51740	51739					0.04084809634287012
TEHWLVRIY	9	Unmodified	_TEHWLVRIY_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000526364.1_1_11:125488416-125491330:+|nuORF	ENSG00000134910|ENST00000392708|STT3A	ENSG00000134910|ENST00000392708|STT3A	MULTI-SECPEP	A375_MHC_IP_R1	1	609.2274780273438	2	608.827298	1215.64004	-0.33284	-0.00020264	-0.26579	-0.00016182	-0.59863	-0.00036446	608.8274106554618	73.693	0.40441	73.693	73.539	73.943	0					12	7	2	0	0	0	0.20645	1	26879	26879		32.786	31.592	1	1423600			53001	4626	38523	38830	51741	51741					0.04084809634287012
TEHWLVRIY	9	Unmodified	_TEHWLVRIY_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000526364.1_1_11:125488416-125491330:+|nuORF	ENSG00000134910|ENST00000392708|STT3A	ENSG00000134910|ENST00000392708|STT3A	MULTI-MSMS	A375_MHC_IP_R2	2	406.9547119140625	3	406.220624	1215.64004	-0.048595	-1.974E-05	-1.214	-0.00049314	-1.2626	-0.00051288	406.2199324234698	72.828	1.3715	73.563	72.922	74.294	0.73541					54	26	3	0	0	0	0.017012	1	27624	27624		87.258	63.468	1	7378000			53002	4626	38523	38830	51742	51742					0.04084809634287012
TEHYDIPKVSW	11	Unmodified	_TEHYDIPKVSW_					0	0	0		nc|ENSG00000105058|Q9Y421-3|FAM32A;ENSG00000105058|ENST00000263384|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	MULTI-MSMS	A375_MHC_IP_R1	1	688.2373657226562	2	687.838059	1373.66157	-0.42588	-0.00029294	-0.7758	-0.00053362	-1.2017	-0.00082656	687.8379023761744	70.263	0.76561	70.263	69.882	70.648	0					35	14	3	0	0	0	0.00051056	1	25461	25461		110.18	88.589	1	9646700			53003	2565	38524	38831	51743	51743					-0.010318501276742609
TEHYDIPKVSW	11	Unmodified	_TEHYDIPKVSW_					0	0	0		nc|ENSG00000105058|Q9Y421-3|FAM32A;ENSG00000105058|ENST00000263384|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	MULTI-MSMS	A375_MHC_IP_R2	2	688.2374267578125	2	687.838059	1373.66157	-0.58365	-0.00040146	-0.97747	-0.00067234	-1.5611	-0.0010738	687.8379034915037	69.626	0.76149	70.36	69.981	70.743	0.73421					36	14	3	0	0	0	0.00027351	1	26339	26339		126.33	104.74	1	10040000			53004	2565	38524	38831	51744	51744					-0.010318501276742609
TEHYDIPKVSW	11	Unmodified	_TEHYDIPKVSW_					0	0	0		nc|ENSG00000105058|Q9Y421-3|FAM32A;ENSG00000105058|ENST00000263384|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	MULTI-MSMS	A375_MHC_IP_R2	2	459.6377868652344	3	458.894465	1373.66157	-0.28012	-0.00012855	-0.10313	-4.7326E-05	-0.38325	-0.00017587	458.8943956070084	69.627	1.1174	70.361	69.931	71.048	0.73421					68	21	4	0	0	0	0.10313	2	26419	26419;26517		50.648	44.413	1	39710000			53005	2565	38524	38831	51745;51746	51745					-0.010318501276742609
TEIAHSVLY	9	Unmodified	_TEIAHSVLY_					0	0	0		ENST00000439661.5_1_16:457533-461575:+|nuORF;nc|ENSG00000242612|Q9NUI1-3|DECR2;ENSG00000242612|ENST00000219481|DECR2	ENST00000439661.5_1_16:457533-461575:+|nuORF	ENST00000439661.5_1_16:457533-461575:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	517.1715087890625	2	516.771657	1031.52876	-0.63395	-0.00032761	0.71775	0.00037092	0.083805	4.3308E-05	516.7721482396049	52.582	0.8611	52.582	52.136	52.997	0					26	16	2	0	0	0	0.064992	1	18749	18749		78.149	49.663	1	3477200			53006	9801	38525	38832	51747	51747					0.014257502063401262
TEIAHSVLY	9	Unmodified	_TEIAHSVLY_					0	0	0		ENST00000439661.5_1_16:457533-461575:+|nuORF;nc|ENSG00000242612|Q9NUI1-3|DECR2;ENSG00000242612|ENST00000219481|DECR2	ENST00000439661.5_1_16:457533-461575:+|nuORF	ENST00000439661.5_1_16:457533-461575:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1708984375	2	516.771657	1031.52876	-1.0524	-0.00054387	0.024041	1.2424E-05	-1.0284	-0.00053144	516.7716856362615	51.882	0.61188	52.634	52.27	52.882	0.75225					19	11	2	0	0	0	0.096726	1	19529	19529		52.268	25.385	1	3795000			53007	9801	38525	38832	51748	51748					0.014257502063401262
TEIASKNFY	9	Unmodified	_TEIASKNFY_					0	0	0			REV__nc|ENSG00000079739|P36871-2|PGM1	REV__nc|ENSG00000079739|P36871-2|PGM1	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1673583984375	2	536.769114	1071.52368	-0.84296	-0.00045247	-1.4745	-0.00079146	-2.3174	-0.0012439	536.7680336641694	80.402	0.70949	80.402	80.086	80.795	0					22	13	3	0	0	0	0.35487	1	29352	29352		29.082	0	1	5519500	+		53008	27121	38526	38833	51749	51749					-0.00922553656278069
TEIAVVVKY	9	Unmodified	_TEIAVVVKY_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	A375_MHC_IP_R2	2	511.69952392578125	2	511.30005	1020.58555	-0.67753	-0.00034642	-0.6855	-0.0003505	-1.363	-0.00069692	511.29995685726976	64.103	1.0676	64.843	64.496	65.564	0.74022					36	20	3	0	0	0	0.04447	1	24292	24292		66.457	24.617	1	1742100			53009	2444	38527	38834	51750	51750					0.07607797762852897
TEIAWFILQ	9	Unmodified	_TEIAWFILQ_					0	0	0		CDK5RAP1|p.S121F|1|0.41|ENSG00000101391|chr20:33395059-33395059|G/A|missense_variant	CDK5RAP1|p.S121F|1|0.41|ENSG00000101391|chr20:33395059-33395059|G/A|missense_variant	CDK5RAP1|p.S121F|1|0.41|ENSG00000101391|chr20:33395059-33395059|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	373.48046875	3	374.206092	1119.59645	0.081963	3.0671E-05	2.3664	0.00088554	2.4484	0.00091621	374.2069213893045	30.844	0.3053	30.844	30.653	30.959	0					7	5	2	0	0	0	0.76187	1	9789	9789		2.2828	2.0469	1	1012200			53010	354	38528	38835	51751	51751					0.04143200137150416
TEIDEKEYI	9	Unmodified	_TEIDEKEYI_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	A375_MHC_IP_R2	2	570.191162109375	2	570.276969	1138.53938	-0.31011	-0.00017685	-2.7888	-0.0015904	-3.0989	-0.0017672	570.2753775481672	48.36	1.0118	49.117	48.729	49.741	0.75736					54	19	3	0	0	0	0.29123	1	18049	18049		31.268	2.1868	1	17567000			53011	4331	38529	38836	51752	51752					-0.02434311929891919
TEIDGRSISLY	11	Unmodified	_TEIDGRSISLY_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;ENST00000494618.1_1_2:232322276-232325237:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-SECPEP	A375_MHC_IP_R1	1	627.7208862304688	2	627.322242	1252.62993	-0.43596	-0.00027349	-0.25004	-0.00015686	-0.686	-0.00043034	627.3219935849381	72.371	0.71057	72.371	72.119	72.83	0					26	13	3	0	0	0	0.31903	1	26312	26312		51.488	17.086	1	4515800			53012	3266	38530	38837	51753	51753					0.01372157118407813
TEIDGRSISLY	11	Unmodified	_TEIDGRSISLY_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;ENST00000494618.1_1_2:232322276-232325237:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	A375_MHC_IP_R2	2	627.721923828125	2	627.322242	1252.62993	-1.1316	-0.00070987	1.2635	0.00079262	0.13191	8.275E-05	627.3222356144204	71.666	0.70885	72.4	72.162	72.871	0.73421					26	13	3	0	0	0	0.10656	1	27207	27207		68.76	26.92	1	5259600			53013	3266	38530	38837	51754	51754					0.01372157118407813
TEIDHWLEF	9	Unmodified	_TEIDHWLEF_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	A375_MHC_IP_R2	2	595.6796264648438	2	595.279846	1188.54514	-0.35316	-0.00021023	-0.02676	-1.593E-05	-0.37992	-0.00022616	595.2798836101523	113.84	0.55007	114.55	114.28	114.83	0.70985					20	10	3	0	0	0	0.022213	1	42959	42959		81.613	24.142	1	5542700			53014	4801	38531	38838	51755	51755					-0.041591686275978645
TEIDPINAL	9	Unmodified	_TEIDPINAL_					0	0	0		ENST00000480653.5_1_20:32878355-32891076:-|nuORF;nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY;ENST00000331585.6_1_2:196447906-196448179:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	985.1214599609375	1	985.520053	984.512776	0.2374	0.00023397	0.0647	6.3763E-05	0.3021	0.00029773	985.5199328832763	99.939	0.4572	100.7	100.47	100.93	0.76278					13	8	2	0	0	0	0.03109	1	37871	37871		103.35	35.273	1	2210100			53015	2296	38532	38839	51756	51756					0.01990043969431099
TEIDPINAL	9	Unmodified	_TEIDPINAL_					0	0	0		ENST00000480653.5_1_20:32878355-32891076:-|nuORF;nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY;ENST00000331585.6_1_2:196447906-196448179:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	985.520053	984.512776	0.21075	0.0002077	0.036401	3.5874E-05	0.24715	0.00024357	985.5200487762005	100.66	0.50574	100.66	100.43	100.94	0	-0.020808	-1.1846E-05	NaN	103.35	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2573100			53016	2296	38532	38839							0.01990043969431099
TEIDTFQVSQ	10	Unmodified	_TEIDTFQVSQ_					0	0	0			REV__nc|ENSG00000137807|Q02241-2|KIF23	REV__nc|ENSG00000137807|Q02241-2|KIF23	MSMS	A375_MHC_IP_R2	2	584.2477416992188	2	584.280043	1166.54553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.915	1	64.655	64.155	65.155	0.74022								0	0	0	0.14601	1	24237	24237		25.399	3.8623	1		+		53017	15713	38533	38840	51757	51757					-0.03107793698382011
TEIDWKAY	8	Unmodified	_TEIDWKAY_					0	0	0		nc|ENSG00000214160|Q92685-2|ALG3;ENSG00000214160|ENST00000397676|ALG3;ALG3|p.A65T|1|0.26|ENSG00000214160|chr3:184248748-184248748|C/T|missense_variant;ENST00000461415.5_1_3:183962900-183966669:-|nuORF;ENST00000482048.1_1_3:183962900-183966716:-|nuORF	nc|ENSG00000214160|Q92685-2|ALG3	nc|ENSG00000214160|Q92685-2|ALG3	MULTI-SECPEP	A375_MHC_IP_R1	1	513.1683349609375	2	513.250557	1024.48656	-0.49024	-0.00025162	0.52996	0.000272	0.039715	2.0384E-05	513.2509332153937	60.269	0.45712	60.269	60.109	60.566	0					13	8	2	0	0	0	0.95423	1	21805	21805		12.532	2.3482	1	1397500			53018	9607	38534	38841	51758	51758					-0.024702252020460946
TEIEGTQKL	9	Unmodified	_TEIEGTQKL_					0	0	0		ENSG00000120899|ENST00000346049|PTK2B;nc|ENSG00000120899|Q14289-2|PTK2B	ENSG00000120899|ENST00000346049|PTK2B	ENSG00000120899|ENST00000346049|PTK2B	MSMS	A375_MHC_IP_R1	1	510.173828125	2	509.774396	1017.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.217	1	30.217	29.717	30.717	0								0	0	0	0.11268	1	9571	9571		38.176	3.7738	1				53019	3695	38535	38842	51759	51759					0.026174289981327092
TEIEIETRW	9	Unmodified	_TEIEIETRW_					0	0	0		ENST00000541682.6_1_17:8024336-8024711:-|nuORF	ENST00000541682.6_1_17:8024336-8024711:-|nuORF	ENST00000541682.6_1_17:8024336-8024711:-|nuORF	MSMS	A375_MHC_IP_R2	2	588.698974609375	2	588.798403	1175.58225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.85	1	108.6	108.1	109.1	0.75436								0	0	0	0.14767	1	40735	40735		25.399	7.253	1				53020	13290	38536	38843	51760	51760					0.0014850291818220285
TEIEILKKL	9	Unmodified	_TEIEILKKL_					0	0	0		ENST00000439346.5_1_22:29095780-29107983:-|nuORF;nc|ENSG00000183765|O96017-8|CHEK2;nc|ENSG00000183765|O96017-13|CHEK2;nc|ENSG00000183765|O96017-7|CHEK2;nc|ENSG00000183765|O96017-4|CHEK2;nc|ENSG00000183765|O96017-12|CHEK2;ENSG00000183765|ENST00000404276|CHEK2;nc|ENSG00000183765|O96017-9|CHEK2	ENST00000439346.5_1_22:29095780-29107983:-|nuORF	ENST00000439346.5_1_22:29095780-29107983:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	363.297119140625	3	362.897147	1085.66961	-0.16388	-5.9471E-05	0.33057	0.00011996	0.16669	6.0491E-05	362.89720630997823	67.46	0.70956	67.46	67.245	67.955	0					25	13	3	0	0	0	0.39273	1	24459	24459		43.982	11.084	1	2804500			53021	8527	38537	38844	51761	51761					0.1302032885976132
TEIEILKKL	9	Unmodified	_TEIEILKKL_					0	0	0		ENST00000439346.5_1_22:29095780-29107983:-|nuORF;nc|ENSG00000183765|O96017-8|CHEK2;nc|ENSG00000183765|O96017-13|CHEK2;nc|ENSG00000183765|O96017-7|CHEK2;nc|ENSG00000183765|O96017-4|CHEK2;nc|ENSG00000183765|O96017-12|CHEK2;ENSG00000183765|ENST00000404276|CHEK2;nc|ENSG00000183765|O96017-9|CHEK2	ENST00000439346.5_1_22:29095780-29107983:-|nuORF	ENST00000439346.5_1_22:29095780-29107983:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	544.241943359375	2	543.842082	1085.66961	-0.9173	-0.00049887	0.38771	0.00021085	-0.5296	-0.00028802	543.8423535308585	67.526	0.45774	67.526	67.297	67.754	0					15	8	2	0	0	0	0.49701	1	24496	24496		40.239	0	1	1952400			53022	8527	38537	38844	51762	51762					0.1302032885976132
TEIEILKKL	9	Unmodified	_TEIEILKKL_					0	0	0		ENST00000439346.5_1_22:29095780-29107983:-|nuORF;nc|ENSG00000183765|O96017-8|CHEK2;nc|ENSG00000183765|O96017-13|CHEK2;nc|ENSG00000183765|O96017-7|CHEK2;nc|ENSG00000183765|O96017-4|CHEK2;nc|ENSG00000183765|O96017-12|CHEK2;ENSG00000183765|ENST00000404276|CHEK2;nc|ENSG00000183765|O96017-9|CHEK2	ENST00000439346.5_1_22:29095780-29107983:-|nuORF	ENST00000439346.5_1_22:29095780-29107983:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	363.2970275878906	3	362.897147	1085.66961	-0.22395	-8.1269E-05	0.001146	4.1588E-07	-0.2228	-8.0853E-05	362.8971482217014	66.58	0.61241	67.316	67.035	67.648	0.73631					21	11	2	0	0	0	0.1952	1	25212	25212		46.022	6.8093	1	5054600			53023	8527	38537	38844	51763	51763					0.1302032885976132
TEIEILKKL	9	Unmodified	_TEIEILKKL_					0	0	0		ENST00000439346.5_1_22:29095780-29107983:-|nuORF;nc|ENSG00000183765|O96017-8|CHEK2;nc|ENSG00000183765|O96017-13|CHEK2;nc|ENSG00000183765|O96017-7|CHEK2;nc|ENSG00000183765|O96017-4|CHEK2;nc|ENSG00000183765|O96017-12|CHEK2;ENSG00000183765|ENST00000404276|CHEK2;nc|ENSG00000183765|O96017-9|CHEK2	ENST00000439346.5_1_22:29095780-29107983:-|nuORF	ENST00000439346.5_1_22:29095780-29107983:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	544.1765747070312	2	543.842082	1085.66961	-0.93323	-0.00050753	0.58024	0.00031556	-0.35299	-0.00019197	543.8424334789177	66.58	0.51048	67.316	67.035	67.546	0.73631					16	9	2	0	0	0	0.49701	1	25236	25236		47.594	14.809	1	2356200			53024	8527	38537	38844	51764	51764					0.1302032885976132
TEIELAKQI	9	Unmodified	_TEIELAKQI_					0	0	0		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000413611.2_1_1:146675128-146675437:-|nuORF	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-SECPEP	A375_MHC_IP_R1	1	523.2001342773438	2	522.800414	1043.58628	-0.57436	-0.00030028	0.042293	2.2111E-05	-0.53207	-0.00027817	522.8003333900176	58.681	0.50828	58.681	58.43	58.938	0					14	9	2	0	0	0	0.011357	1	21102	21102		114.2	60.369	1	1804700			53025	6184	38538	38845	51765	51765					0.06622592411895312
TEIERLITW	9	Unmodified	_TEIERLITW_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	A375_MHC_IP_R1	1	581.2188110351562	2	580.819138	1159.62372	-0.15436	-8.9655E-05	-0.071419	-4.1482E-05	-0.22578	-0.00013114	580.8191122351201	101.34	0.6585	101.34	100.94	101.6	0					26	12	3	0	0	0	0.32966	1	37231	37231		49.527	34.689	1	2514600			53026	9791	38539	38846	51766	51766					0.05029683677526009
TEIERLITW	9	Unmodified	_TEIERLITW_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	A375_MHC_IP_R2	2	581.2186279296875	2	580.819138	1159.62372	-0.12312	-7.1511E-05	-0.17829	-0.00010355	-0.30141	-0.00017507	580.8188233087183	100.43	0.87247	101.2	100.88	101.75	0.76278					21	16	2	0	0	0	0.26374	1	38094	38094		55.235	32.086	1	1706400			53027	9791	38539	38846	51767	51767					0.05029683677526009
TEIERLITWY	10	Unmodified	_TEIERLITWY_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MSMS	A375_MHC_IP_R2	2	662.156494140625	2	662.350803	1322.68705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.31	1	113.04	112.54	113.54	0.72458								0	0	0	0.10068	1	42341	42341		43.982	22.445	1				53028	9791	38540	38847	51768	51768					0.038616243947672046
TEIFDCWHP	9	Unmodified	_TEIFDCWHP_					0	0	0			REV__ENST00000432137.1_1_9:15527225-15527390:-|nuORF	REV__ENST00000432137.1_1_9:15527225-15527390:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	573.659423828125	2	574.247492	1146.48043	0.01645	9.4466E-06	0.81689	0.0004691	0.83334	0.00047854	574.2479099321664	111.81	0.86462	111.81	111.46	112.33	0					38	16	3	0	0	0	0.62767	1	40927	40927		16.942	0	1	11114000	+		53029	24710	38541	38848	51769	51769					-0.08695066705217869
TEIFGFSNNY	10	Unmodified	_TEIFGFSNNY_					0	0	0		ENSG00000136982|ENST00000313655|DSCC1	ENSG00000136982|ENST00000313655|DSCC1	ENSG00000136982|ENST00000313655|DSCC1	MULTI-SECPEP	A375_MHC_IP_R1	1	397.2806091308594	3	397.848744	1190.5244	-0.39286	-0.0001563	4.001	0.0015918	3.6082	0.0014355	397.8501159738564	23.951	0.25364	23.951	23.838	24.092	0					6	4	2	0	0	0	0.92227	1	6722	6722		5.0475	0	1	822720			53030	4850	38542	38849	51770	51770					-0.06323759007204899
TEIFPSPTNK	10	Unmodified	_TEIFPSPTNK_					0	0	0			REV__ENSG00000001084|ENST00000650454|GCLC	REV__ENSG00000001084|ENST00000650454|GCLC	MULTI-SECPEP	A375_MHC_IP_R2	2	378.9580078125	3	378.532756	1132.57644	-0.21796	-8.2507E-05	0.93963	0.00035568	0.72167	0.00027317	378.53283208458726	20.724	0.76117	21.334	20.855	21.616	0.61029					27	14	3	0	0	0	0.92199	1	6480	6480		10.899	6.3701	1	1180100	+		53031	16081	38543	38850	51771	51771					0.015454044065336348
TEIGICVTLEW	11	Unmodified	_TEIGICVTLEW_					0	0	0		nc|ENSG00000048540|Q8TAP4-2|LMO3	nc|ENSG00000048540|Q8TAP4-2|LMO3	nc|ENSG00000048540|Q8TAP4-2|LMO3	MULTI-SECPEP	A375_MHC_IP_R1	1	632.1803588867188	2	632.318114	1262.62167	-0.60632	-0.00038339	2.8384	0.0017947	2.232	0.0014114	632.3200651807367	57.237	0.40799	57.237	57.059	57.467	0					11	7	2	0	0	0	0.95991	1	20574	20574		8.7454	0	1	989060			53032	14464	38544	38851	51772	51772					0.0008688687737503642
TEIHKELIEQ	10	Unmodified	_TEIHKELIEQ_					0	0	0			REV__nc|ENSG00000139746|Q5T8P6-5|RBM26	REV__nc|ENSG00000139746|Q5T8P6-5|RBM26	MULTI-SECPEP	A375_MHC_IP_R1	1	414.2908935546875	3	413.890832	1238.65067	0.23896	9.8903E-05	-0.30886	-0.00012783	-0.069897	-2.893E-05	413.8907495084027	40.193	0.40731	40.193	39.948	40.355	0					16	7	3	0	0	0	0.93578	1	13801	13801		0.56317	0.2339	1	2972700	+		53033	19180	38545	38852	51773	51773					0.04088747498076373
TEIILGETKAY	11	Unmodified	_TEIILGETKAY_					0	0	0		ENSG00000071575|ENST00000155926|TRIB2	ENSG00000071575|ENST00000155926|TRIB2	ENSG00000071575|ENST00000155926|TRIB2	MULTI-SECPEP	A375_MHC_IP_R1	1	619.7371826171875	2	619.337361	1236.66017	-0.34978	-0.00021663	0.064555	3.9982E-05	-0.28522	-0.00017665	619.3373656905613	63.468	0.66448	63.468	63.173	63.837	0					35	12	4	0	0	0	0.00085383	1	22903	22903		139.32	60.593	1	5651700			53034	1515	38546	38853	51774	51774					0.05130515783594092
TEIILGETKAY	11	Unmodified	_TEIILGETKAY_					0	0	0		ENSG00000071575|ENST00000155926|TRIB2	ENSG00000071575|ENST00000155926|TRIB2	ENSG00000071575|ENST00000155926|TRIB2	MULTI-SECPEP	A375_MHC_IP_R2	2	619.7366943359375	2	619.337361	1236.66017	-0.73454	-0.00045493	0.68405	0.00042366	-0.050495	-3.1273E-05	619.337242498856	62.702	0.55473	63.444	63.13	63.685	0.74263					33	10	5	0	0	0	0.037235	1	23759	23759		108.26	40.424	1	3990700			53035	1515	38546	38853	51775	51775					0.05130515783594092
TEIKPILEKY	10	Unmodified	_TEIKPILEKY_					0	0	0		tr|U7SP94|U7SP94_FUSNUAdenylosuccinatelyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01775PE=3SV=1	tr|U7SP94|U7SP94_FUSNUAdenylosuccinatelyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01775PE=3SV=1	tr|U7SP94|U7SP94_FUSNUAdenylosuccinatelyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01775PE=3SV=1	MSMS	A375_MHC_IP_R2	2	617.6055908203125	2	617.358096	1232.70164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.1	1	111.84	111.34	112.34	0.73692								0	0	0	0.1552	1	41897	41897		3.9444	0.66309	1				53036	29574	38547	38854	51776	51776					0.0945969654289911
TEIKVGVAY	9	Unmodified	_TEIKVGVAY_					0	0	0		ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	MULTI-SECPEP	A375_MHC_IP_R1	1	490.67626953125	2	490.276575	978.538597	-0.40326	-0.00019771	0.082515	4.0455E-05	-0.32074	-0.00015725	490.27655075044055	52.573	1.065	52.573	52.287	53.352	0					42	20	3	0	0	0	0.090157	1	18681	18681		76.825	29.076	1	12115000			53037	1133	38548	38855	51777	51777					0.04846938211710494
TEIKVGVAY	9	Unmodified	_TEIKVGVAY_					0	0	0		ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	MULTI-SECPEP	A375_MHC_IP_R2	2	490.6764221191406	2	490.276575	978.538597	-0.85779	-0.00042055	0.1092	5.3539E-05	-0.74859	-0.00036701	490.27658371501724	51.904	1.0154	52.657	52.321	53.336	0.75225					41	19	4	0	0	0	0.042716	1	19496	19496		96.367	63.581	1	11294000			53038	1133	38548	38855	51778	51778					0.04846938211710494
TEIKVNPPQDF	11	Unmodified	_TEIKVNPPQDF_					0	0	0		ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	MULTI-SECPEP	A375_MHC_IP_R2	2	644.9973754882812	2	644.33261	1286.65067	-0.96867	-0.00062415	0.21299	0.00013724	-0.75568	-0.00048691	644.3329212109815	61.904	0.60584	62.647	62.319	62.925	0.74263					16	11	2	0	0	0	0.99048	1	23373	23373		12.175	5.969	1	2066700			53039	3851	38549	38856	51779	51779					0.018807474980121697
TEILNNQLYL	10	Unmodified	_TEILNNQLYL_					0	0	0			REV__ENSG00000139330|ENST00000266719|KERA	REV__ENSG00000139330|ENST00000266719|KERA	MULTI-SECPEP	A375_MHC_IP_R1	1	407.97064208984375	3	407.555561	1219.64485	-0.4505	-0.0001836	1.1153	0.00045456	0.66483	0.00027095	407.55592013572743	39.618	0.50797	39.618	39.491	39.999	0					13	9	2	0	0	0	0.93733	1	13680	13680		3.0723	0	1	2385300	+		53040	19150	38550	38857	51780	51780					0.04381648986395703
TEILYEFAY	9	Unmodified	_TEILYEFAY_					0	0	0			REV__ENSG00000136381|ENST00000258886|IREB2	REV__ENSG00000136381|ENST00000258886|IREB2	MULTI-SECPEP	A375_MHC_IP_R2	2	574.6469116210938	2	574.779148	1147.54374	-0.023037	-1.3241E-05	-2.6601	-0.001529	-2.6831	-0.0015422	574.7761274309014	111.17	0.61699	111.91	111.7	112.32	0.73691					21	11	4	0	0	0	0.52144	1	41881	41881		23.148	7.3012	1	1048800	+		53041	18934	38551	38858	51781	51781					-0.024128027163214938
TEIMLDRW	8	Unmodified	_TEIMLDRW_					0	0	0		ENST00000403963.5_1_7:14249142-14880939:-|nuORF;nc|ENSG00000136267|Q9Y6T7-2|DGKB;ENSG00000136267|ENST00000402815|DGKB;nc|ENSG00000136267|Q9Y6T7|DGKB	ENST00000403963.5_1_7:14249142-14880939:-|nuORF	ENST00000403963.5_1_7:14249142-14880939:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	355.4599914550781	3	355.179548	1062.51682	-0.42015	-0.00014923	0.078163	2.7762E-05	-0.34198	-0.00012147	355.1795164873534	35.732	2.1301	36.496	35.375	37.505	0.76338					70	41	2	0	0	0	0.77624	1	12939	12939		6.2058	1.3088	1	2191900			53042	4774	38552	38859	51782	51782					-0.011941898085296998
TEINFTQKL	9	Unmodified	_TEINFTQKL_					0	0	0		ENSG00000163961|ENST00000318037|RNF168	ENSG00000163961|ENST00000318037|RNF168	ENSG00000163961|ENST00000318037|RNF168	MULTI-SECPEP	A375_MHC_IP_R1	1	547.697509765625	2	547.298039	1092.58152	-0.41972	-0.00022971	-0.38186	-0.00020899	-0.80159	-0.00043871	547.2977985096161	62.613	0.56304	62.613	62.403	62.966	0					21	10	3	0	0	0	0.041713	1	22594	22594		110.55	44.096	1	4908300			53043	6755	38553	38860	51783	51783					0.038937082691290925
TEINFTQKL	9	Unmodified	_TEINFTQKL_					0	0	0		ENSG00000163961|ENST00000318037|RNF168	ENSG00000163961|ENST00000318037|RNF168	ENSG00000163961|ENST00000318037|RNF168	MULTI-MSMS	A375_MHC_IP_R2	2	547.6966552734375	2	547.298039	1092.58152	-1.079	-0.00059056	-0.34871	-0.00019085	-1.4278	-0.00078141	547.2977513506384	61.807	0.60434	62.55	62.27	62.874	0.74263					28	11	3	0	0	0	0.0098876	1	23400	23400		117.84	53.877	1	5481000			53044	6755	38553	38860	51784	51784					0.038937082691290925
TEINPGNYRHF	11	Unmodified	_TEINPGNYRHF_					0	0	0		ENSG00000145725|ENST00000358359|PPIP5K2;nc|ENSG00000145725|O43314-2|PPIP5K2	ENSG00000145725|ENST00000358359|PPIP5K2	ENSG00000145725|ENST00000358359|PPIP5K2	MULTI-SECPEP	A375_MHC_IP_R2	2	450.6543273925781	3	449.886192	1346.63675	-0.67949	-0.00030569	0.58416	0.00026281	-0.095328	-4.2887E-05	449.88622537101685	38.541	0.3037	39.315	39.149	39.453	0.77451					7	5	2	0	0	0	1.0004	1	14239	14239		2.6312	0.72486	1	1216200			53045	5574	38554	38861	51785	51785					-0.022704852104197926
TEIPADYQRI	10	Unmodified	_TEIPADYQRI_					0	0	0		SCAMP2|p.S138F|1|0.15|ENSG00000140497|chr15:74851412-74851412|G/A|missense_variant;ENST00000567638.1_1_15:75140939-75144521:-|nuORF;ENST00000563829.5_1_15:75137426-75144629:-|nuORF;ENSG00000140497|ENST00000268099|SCAMP2	SCAMP2|p.S138F|1|0.15|ENSG00000140497|chr15:74851412-74851412|G/A|missense_variant	SCAMP2|p.S138F|1|0.15|ENSG00000140497|chr15:74851412-74851412|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	402.93585205078125	3	402.543544	1204.6088	-0.19682	-7.923E-05	3.3997	0.0013685	3.2029	0.0012893	402.54537946479985	30.096	0.60951	30.815	30.454	31.064	0.71857					25	11	3	0	0	0	0.27133	1	10528	10528		30.431	16.213	1	3012700			53046	5161	38555	38862	51786	51786					0.014681918094993307
TEIPFDLGNK	10	Unmodified	_TEIPFDLGNK_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3;ENST00000475306.1_1_1:24410803-24434643:-|nuORF	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-MSMS	A375_MHC_IP_R1	1	378.93280029296875	3	378.532756	1132.57644	0.33429	0.00012654	-0.23292	-8.8168E-05	0.10137	3.8371E-05	378.532630176162	34.745	0.50638	34.745	34.456	34.963	0					24	8	4	0	0	0	0.64017	1	11458	11458		17.863	0.42053	1	16394000			53047	5323	38556	38863	51787	51787					0.015454044065108974
TEIPFDLGNK	10	Unmodified	_TEIPFDLGNK_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3;ENST00000475306.1_1_1:24410803-24434643:-|nuORF	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-SECPEP	A375_MHC_IP_R1	1	567.6954956054688	2	567.295496	1132.57644	-0.37117	-0.00021056	-0.45707	-0.00025929	-0.82824	-0.00046985	567.295172522489	34.719	0.40497	34.719	34.507	34.912	0					12	7	2	0	0	0	0.76274	1	11468	11468		29.841	7.1043	1	8429300			53048	5323	38556	38863	51788	51788					0.015454044065108974
TEIPFDLGNK	10	Unmodified	_TEIPFDLGNK_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3;ENST00000475306.1_1_1:24410803-24434643:-|nuORF	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-MSMS	A375_MHC_IP_R2	2	378.93280029296875	3	378.532756	1132.57644	-0.33129	-0.0001254	0.10241	3.8765E-05	-0.22888	-8.6639E-05	378.53268085335736	33.995	0.65822	34.747	34.399	35.057	0.75225					24	12	3	0	0	0	0.57453	1	12195	12195		22.775	4.0537	1	13454000			53049	5323	38556	38863	51789	51789					0.015454044065108974
TEIPFDLGNK	10	Unmodified	_TEIPFDLGNK_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3;ENST00000475306.1_1_1:24410803-24434643:-|nuORF	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-SECPEP	A375_MHC_IP_R2	2	567.6954345703125	2	567.295496	1132.57644	-0.83208	-0.00047204	-0.28408	-0.00016116	-1.1162	-0.00063319	567.2954156866529	34.008	0.40421	34.76	34.5	34.904	0.75225					12	7	2	0	0	0	0.83327	1	12203	12203		29.841	29.841	1	5392300			53050	5323	38556	38863	51790	51790					0.015454044065108974
TEIPGTKVF	9	Unmodified	_TEIPGTKVF_					0	0	0		ENSG00000137364|ENST00000309983|TPMT	ENSG00000137364|ENST00000309983|TPMT	ENSG00000137364|ENST00000309983|TPMT	MULTI-MSMS	A375_MHC_IP_R2	2	496.6763000488281	2	496.276575	990.538597	-0.80419	-0.0003991	0.46295	0.00022975	-0.34124	-0.00016935	496.2767826210376	60.091	1.5739	60.838	59.742	61.316	0.74714					50	30	3	0	0	0	0.082375	1	22743	22743		53.833	0	1	4489100			53051	4879	38557	38864	51791	51791					0.042949382117285495
TEIPKGMRSM	10	Unmodified	_TEIPKGMRSM_					0	0	0			REV__nc|ENSG00000137834|O43541-2|SMAD6	REV__nc|ENSG00000137834|O43541-2|SMAD6	MULTI-MSMS	A375_MHC_IP_R2	2	575.6923828125	2	575.291376	1148.5682	-0.64372	-0.00037033	1.7882	0.0010288	1.1445	0.00065843	575.2923177957229	34.021	0.40513	34.774	34.55	34.955	0.75225					12	7	3	0	0	0	0.38709	1	12243	12243		34.932	2.6266	1	4053100	+		53052	27251	38558	38865	51792	51792					-0.00014189106104822713
TEIPNHVNL	9	Unmodified	_TEIPNHVNL_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1481323242188	2	518.774731	1035.53491	-1.0762	-0.0005583	0.053853	2.7938E-05	-1.0223	-0.00053036	518.77497644731	38.548	0.50899	39.322	39.047	39.556	0.77451					24	9	4	0	0	0	0.11436	1	14291	14291		49.933	7.8384	1	9769500			53053	14846;9178	38559	38866	51793	51793					0.018562684378366612
TEIPPALISL	10	Unmodified	_TEIPPALISL_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MSMS	A375_MHC_IP_R2	2	352.2768859863281	3	351.877864	1052.61176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.918	1	34.671	34.171	35.171	0.75225								0	0	0	0.14504	1	12189	12189		27.223	2.2323	1				53054	2175	38560	38867	51794	51794					0.08756066934324735
TEIQEQAF	8	Unmodified	_TEIQEQAF_					0	0	0		nc|ENSG00000292277|Q9UJ98|STAG3;ENSG00000066923|ENST00000615138|STAG3;nc|ENSG00000292277|Q9UJ98-3|STAG3	nc|ENSG00000292277|Q9UJ98|STAG3	nc|ENSG00000292277|Q9UJ98|STAG3	MULTI-MSMS	A375_MHC_IP_R2	2	483.6449279785156	2	483.232364	964.450176	-0.93768	-0.00045312	-0.32569	-0.00015738	-1.2634	-0.0006105	483.2320621553352	58.767	0.55722	59.514	59.185	59.742	0.74714					16	10	2	0	0	0	0.7754	1	22280	22280		11.64	0	1	1118900			53055	1422	38561	38868	51795	51795					-0.033471020987576594
TEIQTTIREYY	11	Unmodified	_TEIQTTIREYY_					0	0	0		nc|ENSG999|O00370|L1_ORF2	nc|ENSG999|O00370|L1_ORF2	nc|ENSG999|O00370|L1_ORF2	MULTI-MSMS	A375_MHC_IP_R2	2	709.253662109375	2	708.853906	1415.69326	-0.67336	-0.00047732	-0.11096	-7.8654E-05	-0.78432	-0.00055597	708.8538646427137	83.827	0.46155	84.567	84.407	84.868	0.73962					12	8	2	0	0	0	0.51633	1	31897	31897		29.841	6.0508	1	2753700			53056	14975	38562	38869	51796	51796					0.0020409783562627126
TEIQTTIREYY	11	Unmodified	_TEIQTTIREYY_					0	0	0		nc|ENSG999|O00370|L1_ORF2	nc|ENSG999|O00370|L1_ORF2	nc|ENSG999|O00370|L1_ORF2	MULTI-MATCH	A375_MHC_IP_R1	1		2	708.853906	1415.69326	-0.79468	-0.00056331	-0.047821	-3.3898E-05	-0.8425	-0.00059721	708.8540089525187	84.491	0.5087	84.491	84.292	84.8	0	-0.038111	2.6471E-05	NaN	29.841	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2068700			53057	14975	38562	38869							0.0020409783562627126
TEISELSHNF	10	Unmodified	_TEISELSHNF_					0	0	0		ENSG00000117862|ENST00000371626|TXNDC12	ENSG00000117862|ENST00000371626|TXNDC12	ENSG00000117862|ENST00000371626|TXNDC12	MULTI-SECPEP	A375_MHC_IP_R1	1	589.1801147460938	2	588.78021	1175.54587	-0.30552	-0.00017988	1.1379	0.00066994	0.83234	0.00049006	588.7802603122512	64.048	0.55629	64.048	63.837	64.393	0					16	10	2	0	0	0	0.13368	1	23178	23178		64.927	15.372	1	2291600			53058	3515	38563	38870	51797	51797					-0.03488373978530035
TEISELSHNF	10	Unmodified	_TEISELSHNF_					0	0	0		ENSG00000117862|ENST00000371626|TXNDC12	ENSG00000117862|ENST00000371626|TXNDC12	ENSG00000117862|ENST00000371626|TXNDC12	MULTI-MSMS	A375_MHC_IP_R2	2	589.1799926757812	2	588.78021	1175.54587	-0.51379	-0.00030251	0.49415	0.00029094	-0.019646	-1.1567E-05	588.780162904924	63.308	0.45853	64.049	63.885	64.344	0.74022					14	8	2	0	0	0	0.37567	1	24054	24054		35.612	10.213	1	1460000			53059	3515	38563	38870	51798	51798					-0.03488373978530035
TEISLQQRL	9	Unmodified	_TEISLQQRL_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155;ENST00000515054.1_1_5:37301511-37303501:-|nuORF	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-SECPEP	A375_MHC_IP_R1	1	543.73681640625	2	544.308938	1086.60332	-0.43479	-0.00023666	-0.0056639	-3.0829E-06	-0.44045	-0.00023974	544.3088865277057	54.389	0.80999	54.389	54.063	54.873	0					25	15	2	0	0	0	0.046478	1	19398	19398		92.653	28.693	1	10659000			53060	3161	38564	38871	51799	51799					0.06348513017701407
TEISLQQRL	9	Unmodified	_TEISLQQRL_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155;ENST00000515054.1_1_5:37301511-37303501:-|nuORF	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-SECPEP	A375_MHC_IP_R2	2	544.70849609375	2	544.308938	1086.60332	-1.3177	-0.00071724	0.16507	8.9852E-05	-1.1526	-0.00062739	544.3090209926397	53.576	0.61498	54.327	54.046	54.661	0.75105					22	11	2	0	0	0	0.40377	1	20208	20208		28.495	2.2264	1	8102000			53061	3161	38564	38871	51800	51800					0.06348513017701407
TEISSHESSY	10	Unmodified	_TEISSHESSY_					0	0	0		IL15RA|p.H172Y|1|0.17|ENSG00000134470|chr10:5960436-5960436|G/A|missense_variant	IL15RA|p.H172Y|1|0.17|ENSG00000134470|chr10:5960436-5960436|G/A|missense_variant	IL15RA|p.H172Y|1|0.17|ENSG00000134470|chr10:5960436-5960436|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	570.1594848632812	2	570.2462	1138.47785	-0.046558	-2.6549E-05	-0.60168	-0.0003431	-0.64823	-0.00036965	570.2459082826966	112.02	0.71306	112.02	111.67	112.38	0					19	13	2	0	0	0	0.53946	1	40975	40975		25.399	11.493	1	1733800			53062	14149	38565	38872	51801	51801					-0.08585243629181605
TEISTCSEV	9	Carbamidomethyl (C)	_TEISTC(Carbamidomethyl (C))SEV_	TEISTC(1)SEV		TEISTC(51)SEV		0	1	0		ENSG00000249693|ENST00000512175|THEGL	ENSG00000249693|ENST00000512175|THEGL	ENSG00000249693|ENST00000512175|THEGL	MULTI-MSMS	A375_MHC_IP_R1	1	513.6272583007812	2	513.226422	1024.43829	-0.043736	-2.2447E-05	1.7896	0.00091848	1.7459	0.00089603	513.2278847629609	114.87	0.7074	114.87	114.46	115.17	0					28	13	3	0	0	0	0.098973	1	42102	42102		50.855	6.9967	1	8007200			53063	9839	38566	38873	51802	51802	50				-0.07295086904252912
TEISTCSEV	9	Carbamidomethyl (C)	_TEISTC(Carbamidomethyl (C))SEV_					0	1	0		ENSG00000249693|ENST00000512175|THEGL	ENSG00000249693|ENST00000512175|THEGL	ENSG00000249693|ENST00000512175|THEGL	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	513.226422	1024.43829	-0.043736	-2.2447E-05	1.7896	0.00091848	1.7459	0.00089603	513.2278847629609	114.87	0.7074	114.87	114.46	115.17	0	0.068084	-0.00021255	NaN	50.855	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8007200			53064	9839	38566	38873			50				-0.07295086904252912
TEISTCSEV	9	Carbamidomethyl (C)	_TEISTC(Carbamidomethyl (C))SEV_					0	1	0		ENSG00000249693|ENST00000512175|THEGL	ENSG00000249693|ENST00000512175|THEGL	ENSG00000249693|ENST00000512175|THEGL	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	513.226422	1024.43829	-0.54852	-0.00028152	2.1617	0.0011094	1.6132	0.00082792	513.2278339898477	114.03	0.60084	114.74	114.43	115.03	0.70985	-0.068084	0.00016936	NaN	50.855	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7471300			53065	9839	38566	38873			50				-0.07295086904252912
TEITDDLHFY	10	Unmodified	_TEITDDLHFY_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-SECPEP	A375_MHC_IP_R2	2	627.1146850585938	2	627.287868	1252.56118	-0.72509	-0.00045484	0.86578	0.00054309	0.14069	8.8253E-05	627.2882503100146	91.216	1.0158	91.95	91.514	92.53	0.7345					52	19	4	0	0	0	0.013544	1	34712	34712		136.33	92.561	1	19618000			53066	9124	38567	38874	51803	51803					-0.05499507181343688
TEIVLESFH	9	Unmodified	_TEIVLESFH_					0	0	0		ENSG00000149308|ENST00000278612|NPAT;ENST00000530859.1_1_11:108029671-108040846:-|nuORF	ENSG00000149308|ENST00000278612|NPAT	ENSG00000149308|ENST00000278612|NPAT	MULTI-SECPEP	A375_MHC_IP_R1	1	1073.8033447265625	1	1074.5466	1073.53933	0.30488	0.00032761	-0.4101	-0.00044067	-0.10522	-0.00011306	1074.545969245812	111.49	0.71609	111.49	111.16	111.87	0					21	13	2	0	0	0	0.77834	1	40995	40995		4.756	0	1	6397300			53067	5799	38568	38875	51804	51804					0.005497328607589225
TEIVLESFH	9	Unmodified	_TEIVLESFH_					0	0	0		ENSG00000149308|ENST00000278612|NPAT;ENST00000530859.1_1_11:108029671-108040846:-|nuORF	ENSG00000149308|ENST00000278612|NPAT	ENSG00000149308|ENST00000278612|NPAT	MULTI-MATCH	A375_MHC_IP_R2	2		1	1074.5466	1073.53933	0.24834	0.00026685	-0.22929	-0.00024639	0.019045	2.0465E-05	1074.5462656704747	110.82	0.60991	111.56	111.29	111.9	0.73691	0.033708	0.0001165	NaN	4.756	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5046700			53068	5799	38568	38875							0.005497328607589225
TEIYFPDMQ	9	Unmodified	_TEIYFPDMQ_					0	0	0		ENSG00000178409|ENST00000369042|BEND3	ENSG00000178409|ENST00000369042|BEND3	ENSG00000178409|ENST00000369042|BEND3	MULTI-MSMS	A375_MHC_IP_R1	1	572.6529541015625	2	572.254982	1142.49541	-0.28393	-0.00016248	-2.7874	-0.0015951	-3.0713	-0.0017576	572.2527637464098	61.533	0.51035	61.533	61.176	61.686	0					15	9	2	0	0	0	0.46038	1	22187	22187		21.747	1.293	1	2532700			53069	8159	38569	38876	51805	51805					-0.0701361962790088
TEIYGERLY	9	Unmodified	_TEIYGERLY_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	A375_MHC_IP_R1	1	572.7762451171875	2	572.287671	1142.56079	-0.24517	-0.00014031	-0.29457	-0.00016858	-0.53974	-0.00030889	572.2875314081825	55.362	1.573	55.362	54.975	56.548	0					73	30	3	0	0	0	0.4867	1	20094	20094		20.454	2.3073	1	130390000			53070	3968	38570	38877	51806	51806					-0.004788821105194074
TEIYNRPLN	9	Unmodified	_TEIYNRPLN_					0	0	0			REV__tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	REV__tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	559.6343383789062	2	560.293288	1118.57202	-0.73694	-0.0004129	-0.70026	-0.00039235	-1.4372	-0.00080525	561.295225777027	36.585	0.45855	36.585	36.236	36.695	0					15	8	3	0	0	0	0.69507	1	12243	12243		5.7319	0	1	829360	+		53071	28855	38571	38878	51807	51807					0.017479399836020093
TEKALSNQLNK	11	Unmodified	_TEKALSNQLNK_					0	0	0			REV__ENSG00000128833|ENST00000261839|MYO5C	REV__ENSG00000128833|ENST00000261839|MYO5C	MULTI-MSMS	A375_MHC_IP_R2	2	415.4361877441406	3	415.898098	1244.67246	-0.34683	-0.00014425	0.58842	0.00024472	0.24159	0.00010048	415.89834481161773	20.232	0.8628	20.842	20.399	21.262	0.61029					31	14	3	0	0	0	0.73557	1	6163	6163		3.5927	0.52041	1	3803900	+		53072	18471	38572	38879	51808	51808					0.05991552246609899
TEKANHYY	8	Unmodified	_TEKANHYY_					0	0	0		nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENST00000478641.5_1_1:1248876-1249468:-|nuORF;ENST00000470030.6_1_1:1248876-1250311:-|nuORF	nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	MULTI-SECPEP	A375_MHC_IP_R1	1	513.9675903320312	2	513.237981	1024.46141	-0.39088	-0.00020061	-0.22262	-0.00011425	-0.61349	-0.00031487	513.7390880650515	20.397	0.40647	20.397	20.232	20.638	0					8	5	2	0	0	0	0.60242	1	5210	5210		54.774	8.7526	1	1658000			53073	4074	38573	38880	51809	51809					-0.049842800046235425
TEKDSFFRE	9	Unmodified	_TEKDSFFRE_					0	0	0			REV__ENST00000566509.5_1_15:73052730-73067416:-|nuORF	REV__ENST00000566509.5_1_15:73052730-73067416:-|nuORF	MSMS	A375_MHC_IP_R2	2	579.7208862304688	2	579.774928	1157.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.721	1	89.453	88.953	89.953	0.7318								0	0	0	0.15486	1	33764	33764		7.2892	1.0834	1		+		53074	20114	38574	38881	51810	51810					-0.037163566329581954
TEKDSFFRE	9	Unmodified	_TEKDSFFRE_					0	0	0			REV__ENST00000566509.5_1_15:73052730-73067416:-|nuORF	REV__ENST00000566509.5_1_15:73052730-73067416:-|nuORF	MSMS	A375_MHC_IP_R2	2	579.7813110351562	2	579.774928	1157.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.804	1	89.536	89.036	90.036	0.7318								0	0	0	0.15486	1	33797	33797		7.2892	0	1		+		53075	20114	38574	38881	51811	51811					-0.037163566329581954
TEKEESYDL	9	Unmodified	_TEKEESYDL_					0	0	0			REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	371.6064147949219	3	371.836393	1112.48735	0.2224	8.2696E-05	1.6281	0.00060537	1.8505	0.00068807	372.1714066502417	31.106	0.76022	31.106	30.754	31.514	0					19	14	2	0	0	0	0.77834	1	9818	9818		0	0	1	762050	+		53076	28424	38575	38882	51812	51812					-0.06439475343654522
TEKEESYDL	9	Unmodified	_TEKEESYDL_					0	0	0			REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		3	371.836393	1112.48735	0.40771	0.0001516	1.4542	0.00054073	1.8619	0.00069233	371.83684290600115	30.396	0.96033	31.115	30.759	31.719	0.71857	0.0042123	-4.7651E-05	NaN	0	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1167800	+		53077	28424	38575	38882							-0.06439475343654522
TEKEIIQKL	9	Unmodified	_TEKEIIQKL_					0	0	0		CCDC146|p.M753I|1|0.31|ENSG00000135205|chr7:77286908-77286908|G/A|missense_variant	CCDC146|p.M753I|1|0.31|ENSG00000135205|chr7:77286908-77286908|G/A|missense_variant	CCDC146|p.M753I|1|0.31|ENSG00000135205|chr7:77286908-77286908|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	368.2884216308594	3	367.888651	1100.64412	-0.086221	-3.172E-05	3.3785	0.0012429	3.2923	0.0012112	367.88867164009247	19.438	1.1605	20.041	19.533	20.694	0.60308					53	22	4	0	0	0	0.22013	1	5971	5971		36.506	10.238	1	3114300			53078	308	38576	38883	51813	51813					0.09782854337322533
TEKEIKRKA	9	Unmodified	_TEKEIKRKA_					0	0	0		ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	MULTI-MSMS	A375_MHC_IP_R1	1	368.2884216308594	3	368.224146	1101.65061	0.4729	0.00017413	2.9436	0.0010839	3.4165	0.001258	368.5604294133757	21.162	0.86687	21.162	20.536	21.403	0					37	16	3	0	0	0	0.70411	1	5517	5517		6.6304	1.5829	1	1397000			53079	4196	38577	38884	51814	51814					0.10384792288709832
TEKEQQPEF	9	Unmodified	_TEKEQQPEF_					0	0	0		nc|ENSG00000168356|Q9UI33-2|SCN11A;nc|ENSG00000168356|Q9UI33-3|SCN11A;ENSG00000168356|ENST00000302328|SCN11A;SCN11A|p.S1269F|1|0.32|ENSG00000168356|chr3:38870698-38870698|G/A|missense_variant;SCN11A|p.D1268N|1|0.13|ENSG00000168356|chr3:38870702-38870702|C/T|missense_variant	nc|ENSG00000168356|Q9UI33-2|SCN11A	nc|ENSG00000168356|Q9UI33-2|SCN11A	MULTI-SECPEP	A375_MHC_IP_R2	2	378.57427978515625	3	379.180383	1134.51932	-0.24822	-9.4121E-05	0.31382	0.000119	0.065601	2.4875E-05	379.18034971609893	20.931	0.45681	21.541	21.16	21.616	0.61029					13	8	2	0	0	0	0.75519	1	6425	6425		10.151	0	1	1151200			53080	7292	38578	38885	51815	51815					-0.042560628698538494
TEKFQSLNY	9	Unmodified	_TEKFQSLNY_					0	0	0			REV__tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1	REV__tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1	MSMS	A375_MHC_IP_R1	1	565.2239990234375	2	565.279846	1128.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.958	1	61.958	61.458	62.458	0								0	0	0	0.1521	1	22360	22360		18.146	0	1		+		53081	28541	38579	38886	51816	51816					-0.013991686275630855
TEKIGRKY	8	Unmodified	_TEKIGRKY_					0	0	0			REV__nc|ENSG00000126787|Q15398-1|DLGAP5	REV__nc|ENSG00000126787|Q15398-1|DLGAP5	MULTI-SECPEP	A375_MHC_IP_R2	2	497.3094482421875	2	497.787641	993.56073	-0.82099	-0.00040868	-0.57036	-0.00028392	-1.3913	-0.00069259	497.7877232774125	23.324	0.20187	23.954	23.828	24.029	0.63014					5	3	2	0	0	0	0.97144	1	7518	7518		2.3027	1.7012	1	920480	+		53082	18397	38580	38887	51817	51817					0.06369162680141471
TEKIGRKY	8	Unmodified	_TEKIGRKY_					0	0	0			REV__nc|ENSG00000126787|Q15398-1|DLGAP5	REV__nc|ENSG00000126787|Q15398-1|DLGAP5	MULTI-MATCH	A375_MHC_IP_R1	1		2	497.787641	993.56073	-0.61907	-0.00030816	-0.18272	-9.0957E-05	-0.80179	-0.00039912	497.7874095189323	24.017	0.20271	24.017	23.889	24.092	0	0.031479	5.112E-05	NaN	2.3027	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2846000	+		53083	18397	38580	38887							0.06369162680141471
TEKIRLERLEK	11	Unmodified	_TEKIRLERLEK_					0	0	0			REV__TNIK|p.E817K|1|0.44|ENSG00000154310|chr3:171101591-171101591|C/T|missense_variant	REV__TNIK|p.E817K|1|0.44|ENSG00000154310|chr3:171101591-171101591|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	472.6888732910156	3	472.284064	1413.83036	-0.66844	-0.00031569	-0.65353	-0.00030865	-1.322	-0.00062435	472.2836553186912	132.18	1.4628	132.18	131.13	132.59	0					107	28	5	0	0	0	0.73881	1	50646	50646		0.50596	0.051438	1	80566000	+		53084	28140	38581	38888	51818	51818					0.14000051505854572
TEKKKKKL	8	Unmodified	_TEKKKKKL_					0	0	0			REV__ENST00000460976.5_1_10:126727718-126848581:-|nuORF	REV__ENST00000460976.5_1_10:126727718-126848581:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1002.5703735351562	1	1002.66699	1001.65972	0.023928	2.3992E-05	-2.1489	-0.0021547	-2.125	-0.0021307	1002.6636055314715	123.5	0.302	123.88	123.73	124.03	0.3766					6	5	2	0	0	0	0.77842	1	47435	47435		0.69038	0.088878	1	12878000	+		53085	24973	38582	38889	51819	51819					0.15895185645024412
TEKKLKGKL	9	Unmodified	_TEKKLKGKL_					0	0	0			REV__SMCO4|p.P8L|1|0.18|ENSG00000166002|chr11:93479167-93479167|G/A|missense_variant	REV__SMCO4|p.P8L|1|0.18|ENSG00000166002|chr11:93479167-93479167|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	1043.9923095703125	1	1044.67756	1043.67028	0.6044	0.0006314	3.3947	0.0035464	3.9991	0.0041778	1044.6785976402102	114.87	0.25195	114.87	114.67	114.92	0					5	4	2	0	0	0	0.78798	1	42114	42114		7.2892	3.3448	1	1229000	+		53086	28016	38583	38890	51820	51820					0.15019168299454577
TEKLRAPI	8	Unmodified	_TEKLRAPI_					0	0	0		ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	MULTI-MSMS	A375_MHC_IP_R2	2	464.6845397949219	2	464.284734	926.554916	-0.50736	-0.00023556	-0.18594	-8.6331E-05	-0.69331	-0.00032189	464.28465102498035	69.322	2.0309	70.056	69.574	71.605	0.73421					108	39	5	0	0	0	0.77488	1	26661	26661		13.508	0	1	306810000			53087	6304	38584	38891	51821	51821					0.08870064168456793
TEKLSAVNIY	10	Unmodified	_TEKLSAVNIY_					0	0	0			REV__nc|ENSG00000186409|Q5VVM6-2|CCDC30	REV__nc|ENSG00000186409|Q5VVM6-2|CCDC30	MULTI-SECPEP	A375_MHC_IP_R2	2	380.6109924316406	3	379.876523	1136.60774	-0.37465	-0.00014232	0.23254	8.8338E-05	-0.1421	-5.3982E-05	379.8763900514626	26.239	0.30441	26.899	26.754	27.058	0.65992					12	5	4	0	0	0	0.91556	1	8884	8884		3.3196	1.2336	1	2027400	+		53088	21968	38585	38892	51822	51822					0.04489977440630355
TEKLYEEWHFD	11	Unmodified	_TEKLYEEWHFD_					0	0	0			REV__ENSG00000102098|ENST00000251900|SCML2	REV__ENSG00000102098|ENST00000251900|SCML2	MSMS	A375_MHC_IP_R2	2	499.45965576171875	3	499.561263	1495.66196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.364	1	55.115	54.615	55.615	0.75075								0	0	0	0.16334	1	20514	20514		1.3296	0.31607	1		+		53089	17205	38586	38893	51823	51823					-0.06604475198491855
TEKMEKRLH	9	Unmodified	_TEKMEKRLH_					0	0	0		nc|ENSG00000066468|P21802-16|FGFR2;nc|ENSG00000066468|P21802-8|FGFR2;nc|ENSG00000066468|P21802-3|FGFR2;ENSG00000066468|ENST00000358487|FGFR2;nc|ENSG00000066468|P21802-18|FGFR2;nc|ENSG00000066468|P21802-5|FGFR2;nc|ENSG00000066468|P21802-6|FGFR2;nc|ENSG00000066468|P21802-17|FGFR2;nc|ENSG00000066468|P21802-2|FGFR2;nc|ENSG00000066468|P21802-23|FGFR2;nc|ENSG00000066468|P21802-21|FGFR2;nc|ENSG00000066468|P21802-15|FGFR2;nc|ENSG00000066468|P21802-20|FGFR2;nc|ENSG00000066468|P21802-4|FGFR2;nc|ENSG00000066468|P21802-22|FGFR2;nc|ENSG00000066468|P21802-14|FGFR2;nc|ENSG00000066468|P21802-19|FGFR2	nc|ENSG00000066468|P21802-16|FGFR2	nc|ENSG00000066468|P21802-16|FGFR2	MULTI-SECPEP	A375_MHC_IP_R2	2	390.9642028808594	3	391.213252	1170.61793	-0.71265	-0.0002788	1.7694	0.00069222	1.0568	0.00041342	391.54843540063246	28.56	0.25326	29.259	29.03	29.283	0.69872					5	4	2	0	0	0	0.75466	1	9769	9769		2.4985	0.90621	1	10106000			53090	1413	38587	38894	51824	51824					0.039442618941848195
TEKNTLELSNG	11	Unmodified	_TEKNTLELSNG_					0	0	0		ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-SECPEP	A375_MHC_IP_R1	1	602.7088012695312	2	603.304049	1204.59355	-0.3092	-0.00018654	-2.02	-0.0012187	-2.3292	-0.0014052	603.8043006770971	25.229	0.15036	25.229	25.104	25.255	0					4	2	2	0	0	0	0.9836	1	7265	7265		4.5289	0	1	1127600			53091	1799	38588	38895	51825	51825					-0.0005671977833117126
TEKPEVYIEP	10	Unmodified	_TEKPEVYIEP_					0	0	0		ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	MULTI-MSMS	A375_MHC_IP_R2	2	603.7091674804688	2	602.808436	1203.60232	-0.83321	-0.00050227	1.0791	0.00065049	0.24589	0.00014822	602.8091005433972	38.481	0.71269	39.255	38.895	39.607	0.77451					36	13	4	0	0	0	0.70329	1	14254	14254		10.824	2.0785	1	4068400			53092	7874	38589	38896	51826	51826					0.008662538581575063
TEKPKIKF	8	Unmodified	_TEKPKIKF_					0	0	0		nc|ENSG00000120688|O75554-2|WBP4;ENSG00000120688|ENST00000379487|WBP4	nc|ENSG00000120688|O75554-2|WBP4	nc|ENSG00000120688|O75554-2|WBP4	MSMS	A375_MHC_IP_R2	2	495.84423828125	2	495.80276	989.590967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.079	1	77.822	77.322	78.322	0.74293								0	0	0	0.16876	1	29268	29268		13.508	0.97634	1				53093	3676	38590	38897	51827	51827					0.09575521345323068
TEKPTNALNK	10	Unmodified	_TEKPTNALNK_					0	0	0		tr|U7SUZ7|U7SUZ7_FUSNUDUF4357domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01067PE=4SV=1	tr|U7SUZ7|U7SUZ7_FUSNUDUF4357domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01067PE=4SV=1	tr|U7SUZ7|U7SUZ7_FUSNUDUF4357domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01067PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	557.681396484375	2	558.306395	1114.59824	-0.66801	-0.00037295	-3.2615	-0.0018209	-3.9295	-0.0021939	558.806240889259	65.884	0.50618	65.884	65.616	66.122	0					13	9	2	0	0	0	0.87163	1	23835	23835		19.257	2.1441	1	2425700			53094	29781	38591	38898	51828	51828					0.04552209155099263
TEKRHRRLE	9	Unmodified	_TEKRHRRLE_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R1	1	408.2840270996094	3	408.902177	1223.6847	-0.27477	-0.00011236	1.5468	0.0006325	1.2721	0.00052014	409.2380899037991	19.325	0.23279	19.325	19.238	19.471	0					6	4	2	0	0	0	0.80535	1	4783	4783		2.2828	0	1	3714200			53095	3298	38592	38899	51829	51829					0.08180633500319345
TEKRIAEFI	9	Unmodified	_TEKRIAEFI_					0	0	0		tr|U7T461|U7T461_FUSNUHTHrpiR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00267PE=4SV=1	tr|U7T461|U7T461_FUSNUHTHrpiR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00267PE=4SV=1	tr|U7T461|U7T461_FUSNUHTHrpiR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00267PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	369.9447021484375	3	369.544996	1105.61316	0.47797	0.00017663	-0.44874	-0.00016583	0.029232	1.0803E-05	369.54480392315264	71.572	0.35287	71.572	71.262	71.615	0					10	6	2	0	0	0	0.74412	1	25997	25997		10.151	0	1	4045100			53096	29994	38593	38900	51830	51830					0.06457701023077789
TEKSLEVT	8	Unmodified	_TEKSLEVT_					0	0	0			REV__nc|ENSG00000110442|Q9P000-2|COMMD9	REV__nc|ENSG00000110442|Q9P000-2|COMMD9	MSMS	A375_MHC_IP_R2	2	453.6378173828125	2	453.742565	905.470577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.964	1	21.575	21.075	22.075	0.61029								0	0	0	0.16876	1	6566	6566		8.5933	0	1		+		53097	17628	38594	38901	51831	51831					0.014060685610388646
TEKTTLWV	8	Unmodified	_TEKTTLWV_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	MULTI-SECPEP	A375_MHC_IP_R1	1	488.46942138671875	2	489.26875	976.522947	-0.072603	-3.5522E-05	-1.2832	-0.00062784	-1.3558	-0.00066336	489.26839396423975	54.088	0.30106	54.088	53.912	54.213	0					8	5	2	0	0	0	0.96296	1	19243	19243		10.183	0.10947	1	1031700			53098	3519	38595	38902	51832	51832					0.03374651694662134
TELAAEEYTL	10	Unmodified	_TELAAEEYTL_					0	0	0		ENSG00000001084|ENST00000650454|GCLC;ENST00000515580.1_1_6:53364966-53365137:-|nuORF	ENSG00000001084|ENST00000650454|GCLC	ENSG00000001084|ENST00000650454|GCLC	MULTI-MSMS	A375_MHC_IP_R1	1	570.6771240234375	2	570.276969	1138.53938	0.19144	0.00010917	-1.2467	-0.00071098	-1.0553	-0.00060181	570.2766200071262	49.008	1.1647	49.008	48.629	49.793	0					44	22	4	0	0	0	0.00055357	2	17262	17262;17299		149.99	11.296	1	18790000			53099	842	38596	38903	51833;51834	51833					-0.02434311929891919
TELAAEEYTL	10	Unmodified	_TELAAEEYTL_					0	0	0		ENSG00000001084|ENST00000650454|GCLC;ENST00000515580.1_1_6:53364966-53365137:-|nuORF	ENSG00000001084|ENST00000650454|GCLC	ENSG00000001084|ENST00000650454|GCLC	MULTI-MSMS	A375_MHC_IP_R2	2	570.6764526367188	2	570.276969	1138.53938	-0.31011	-0.00017685	-2.7888	-0.0015904	-3.0989	-0.0017672	570.2753775481672	48.36	1.0118	49.117	48.729	49.741	0.75736					54	19	3	0	0	0	0.0042505	1	18103	18103		136.33	22.147	1	17567000			53100	842	38596	38903	51835	51835					-0.02434311929891919
TELAAINLDKY	11	Unmodified	_TELAAINLDKY_					0	0	0		ENSG00000107742|ENST00000373109|SPOCK2	ENSG00000107742|ENST00000373109|SPOCK2	ENSG00000107742|ENST00000373109|SPOCK2	MULTI-SECPEP	A375_MHC_IP_R1	1	417.96405029296875	3	417.559082	1249.65542	0.08542	3.5668E-05	0.11629	4.8558E-05	0.20171	8.4226E-05	417.559010857	27.254	0.25264	27.254	27.027	27.28	0					5	4	2	0	0	0	0.98856	1	8215	8215		4.4062	1.0865	1	1548400			53101	2755	38597	38904	51836	51836					0.040576316407850754
TELAERWLGRQ	11	Unmodified	_TELAERWLGRQ_					0	0	0			REV__ROBO1|p.N1088Sfs*50|1|0.03|ENSG00000169855|chr3:78635883-78635884|-/AGTGGCAGTGTATTGTGAAAGC|frameshift_variant	REV__ROBO1|p.N1088Sfs*50|1|0.03|ENSG00000169855|chr3:78635883-78635884|-/AGTGGCAGTGTATTGTGAAAGC|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	453.40423583984375	3	453.577359	1357.71025	-0.35291	-0.00016007	-1.1029	-0.00050023	-1.4558	-0.0006603	453.9106250933822	24.496	0.25137	24.496	24.296	24.547	0					5	4	2	0	0	0	0.99332	1	6868	6868		1.1098	0	1	1224600	+		53102	27892	38598	38905	51837	51837					0.045700632320631485
TELAGFIKKV	10	Unmodified	_TELAGFIKKV_					0	0	0		nc|ENSG00000182670|P53804-3|TTC3;nc|ENSG00000182670|P53804-2|TTC3;ENSG00000182670|ENST00000418766|TTC3;ENST00000399586.2_1_X:74960734-74966719:-|nuORF	nc|ENSG00000182670|P53804-3|TTC3;ENST00000399586.2_1_X:74960734-74966719:-|nuORF	nc|ENSG00000182670|P53804-3|TTC3	MULTI-SECPEP	A375_MHC_IP_R1	1	368.6158447265625	3	369.225375	1104.6543	0.46845	0.00017296	-0.84654	-0.00031257	-0.3781	-0.0001396	369.22502472541703	35.882	0.30581	35.882	35.676	35.982	0					8	5	2	0	0	0	0.9269	1	11921	11921		0.62683	0	1	767510			53103	8429;11543	38599	38906	51838	51838					0.10615462062560255
TELAYEINKQ	10	Unmodified	_TELAYEINKQ_					0	0	0		tr|U7STJ4|U7STJ4_FUSNUElectrontransferflavoproteinalphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01367PE=3SV=1	tr|U7STJ4|U7STJ4_FUSNUElectrontransferflavoproteinalphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01367PE=3SV=1	tr|U7STJ4|U7STJ4_FUSNUElectrontransferflavoproteinalphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01367PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	403.6434631347656	3	403.543432	1207.60847	-0.0031737	-1.2807E-06	0.036495	1.4727E-05	0.033322	1.3447E-05	403.54330235268856	32.198	0.40747	32.935	32.755	33.162	0.73692					13	7	2	0	0	0	0.81532	1	11374	11374		12.856	0	1	6277900			53104	29699	38600	38907	51839	51839					0.012967720896540413
TELCEHWEEHT	11	Unmodified	_TELCEHWEEHT_					0	0	0		ENST00000588526.5_1_19:13876871-13879305:+|nuORF;ENST00000589290.1_1_19:13875402-13879305:+|nuORF;nc|ENSG00000037757|Q9BV20-2|MRI1	ENST00000588526.5_1_19:13876871-13879305:+|nuORF	ENST00000588526.5_1_19:13876871-13879305:+|nuORF	MSMS	A375_MHC_IP_R2	2	707.29248046875	2	707.290616	1412.56668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.04	1	112.76	112.26	113.26	0.72458								0	0	0	0.16203	1	42239	42239		8.1555	2.4237	1				53105	13763	38601	38908	51840	51840					-0.1231015166117686
TELCSPQLRRY	11	Unmodified	_TELCSPQLRRY_					0	0	0			REV__MPL|p.G600E|1|0.28|ENSG00000117400|chr1:43352663-43352663|G/A|missense_variant	REV__MPL|p.G600E|1|0.28|ENSG00000117400|chr1:43352663-43352663|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	456.3049621582031	3	455.902966	1364.68707	-0.52033	-0.00023722	2.7667	0.0012614	2.2464	0.0010241	456.2376547319809	23.737	0.65988	23.737	23.483	24.143	0					16	12	2	0	0	0	0.72949	1	6626	6626		4.7159	0	1	5978900	+		53106	27031	38602	38909	51841	51841					0.01931301123090634
TELDIYHRI	9	Unmodified	_TELDIYHRI_					0	0	0		nc|ENSG00000198925|Q7Z3C6-3|ATG9A;nc|ENSG00000198925|Q7Z3C6-2|ATG9A;ENSG00000198925|ENST00000361242|ATG9A	nc|ENSG00000198925|Q7Z3C6-3|ATG9A	nc|ENSG00000198925|Q7Z3C6-3|ATG9A	MULTI-SECPEP	A375_MHC_IP_R1	1	387.94287109375	3	387.208384	1158.60332	0.35559	0.00013769	0.051969	2.0123E-05	0.40756	0.00015781	387.20836502591783	54.389	0.81093	54.389	54.113	54.924	0					32	15	3	0	0	0	0.57304	1	19419	19419		18.373	3.9677	1	13271000			53107	9373	38603	38910	51842	51842					0.030365130177187893
TELDIYHRI	9	Unmodified	_TELDIYHRI_					0	0	0		nc|ENSG00000198925|Q7Z3C6-3|ATG9A;nc|ENSG00000198925|Q7Z3C6-2|ATG9A;ENSG00000198925|ENST00000361242|ATG9A	nc|ENSG00000198925|Q7Z3C6-3|ATG9A	nc|ENSG00000198925|Q7Z3C6-3|ATG9A	MULTI-SECPEP	A375_MHC_IP_R1	1	580.7091064453125	2	580.308938	1158.60332	-0.074568	-4.3273E-05	0.63163	0.00036654	0.55706	0.00032327	580.3095447591004	54.389	0.45558	54.389	54.163	54.619	0					14	8	2	0	0	0	0.25548	1	19434	19434		53.404	22.136	1	3309000			53108	9373	38603	38910	51843	51843					0.030365130177187893
TELDIYHRI	9	Unmodified	_TELDIYHRI_					0	0	0		nc|ENSG00000198925|Q7Z3C6-3|ATG9A;nc|ENSG00000198925|Q7Z3C6-2|ATG9A;ENSG00000198925|ENST00000361242|ATG9A	nc|ENSG00000198925|Q7Z3C6-3|ATG9A	nc|ENSG00000198925|Q7Z3C6-3|ATG9A	MULTI-MSMS	A375_MHC_IP_R2	2	387.942626953125	3	387.208384	1158.60332	-0.64901	-0.0002513	0.60167	0.00023297	-0.047342	-1.8331E-05	387.20853786493853	53.576	0.61589	54.327	54.097	54.712	0.75105					32	11	4	0	0	0	0.052747	1	20225	20225		63.227	24.613	1	12102000			53109	9373	38603	38910	51844	51844					0.030365130177187893
TELDIYHRI	9	Unmodified	_TELDIYHRI_					0	0	0		nc|ENSG00000198925|Q7Z3C6-3|ATG9A;nc|ENSG00000198925|Q7Z3C6-2|ATG9A;ENSG00000198925|ENST00000361242|ATG9A	nc|ENSG00000198925|Q7Z3C6-3|ATG9A	nc|ENSG00000198925|Q7Z3C6-3|ATG9A	MULTI-SECPEP	A375_MHC_IP_R2	2	580.708984375	2	580.308938	1158.60332	-0.79405	-0.00046079	0.91306	0.00052986	0.11901	6.9065E-05	580.3096370406763	53.576	0.66725	54.327	54.147	54.815	0.75105					16	12	3	0	0	0	0.656	1	20260	20260		26.268	16.194	1	2688300			53110	9373	38603	38910	51845	51845					0.030365130177187893
TELDKLTAQL	10	Unmodified	_TELDKLTAQL_					0	0	0		nc|ENSG00000111913|Q9Y4F9-2|RIPOR2;ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2	nc|ENSG00000111913|Q9Y4F9-2|RIPOR2	nc|ENSG00000111913|Q9Y4F9-2|RIPOR2	MULTI-MSMS	A375_MHC_IP_R2	2	566.7156982421875	2	566.316428	1130.6183	-0.70502	-0.00039927	-0.21466	-0.00012156	-0.91968	-0.00052083	566.3160480854856	71.807	0.5564	72.541	72.213	72.77	0.73421					17	10	2	0	0	0	0.67512	1	27320	27320		15.248	2.206	1	3302700			53111	3042	38604	38911	51846	51846					0.05821960095022405
TELDLHKRL	9	Unmodified	_TELDLHKRL_					0	0	0		ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	MULTI-MSMS	A375_MHC_IP_R1	1	375.9522705078125	3	375.552262	1123.63496	-0.11908	-4.4721E-05	0.10391	3.9023E-05	-0.015172	-5.6979E-06	375.55233630135876	29.227	1.1541	29.227	28.694	29.848	0					67	22	7	0	0	0	0.04447	2	9077	9077;9194		53.317	23.88	1	296140000			53112	1967	38605	38912	51847;51848	51847					0.07808505771663476
TELDLHKRL	9	Unmodified	_TELDLHKRL_					0	0	0		ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	MULTI-SECPEP	A375_MHC_IP_R1	1	563.2244873046875	2	562.824755	1123.63496	-0.89898	-0.00050597	0.34365	0.00019341	-0.55533	-0.00031256	562.8248571659798	29.227	0.40685	29.227	28.996	29.403	0					13	7	2	0	0	0	0.4557	1	9107	9107		24.882	24.882	1	16461000			53113	1967	38605	38912	51849	51849					0.07808505771663476
TELDLHKRL	9	Unmodified	_TELDLHKRL_					0	0	0		ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	MULTI-MSMS	A375_MHC_IP_R2	2	375.9522705078125	3	375.552262	1123.63496	-0.1693	-6.3581E-05	-0.06891	-2.5879E-05	-0.23821	-8.946E-05	375.55224523261296	28.409	0.60529	29.087	28.858	29.464	0.67857					46	11	6	0	0	0	0.012968	3	9802	9779;9802;9803		74.2	28.46	1	350150000			53114	1967	38605	38912	51850;51851;51852	51851					0.07808505771663476
TELDLHKRL	9	Unmodified	_TELDLHKRL_					0	0	0		ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	MULTI-SECPEP	A375_MHC_IP_R2	2	562.2053833007812	2	562.824755	1123.63496	-0.99006	-0.00055723	0.042129	2.3711E-05	-0.94793	-0.00053352	562.82477046235	28.436	0.35446	29.115	28.909	29.263	0.67857					14	6	3	0	0	0	0.55534	1	9812	9812		21.537	8.4945	1	17491000			53115	1967	38605	38912	51853	51853					0.07808505771663476
TELDLYKKM	9	Unmodified	_TELDLYKKM_					0	0	0		nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26;nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	MULTI-MSMS	A375_MHC_IP_R1	1	381.2706298828125	3	380.870492	1139.58965	0.33462	0.00012745	-0.13267	-5.0532E-05	0.20195	7.6916E-05	380.870440227276	47.351	1.2712	47.351	47.003	48.274	0					57	24	4	0	0	0	0.0095341	1	16603	16603		96.936	69.712	1	33270000			53116	5109	38606	38913	51854	51854					0.025435191942506208
TELDLYKKM	9	Unmodified	_TELDLYKKM_					0	0	0		nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26;nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	MULTI-SECPEP	A375_MHC_IP_R1	1	571.2020263671875	2	570.8021	1139.58965	-0.2955	-0.00016867	0.017258	9.8508E-06	-0.27824	-0.00015882	570.802123618109	47.347	0.96537	47.347	47.055	48.02	0					37	18	3	0	0	0	0.0082179	1	16612	16612		165.72	103.15	1	12444000			53117	5109	38606	38913	51855	51855					0.025435191942506208
TELDLYKKM	9	Unmodified	_TELDLYKKM_					0	0	0		nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26;nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	MULTI-MSMS	A375_MHC_IP_R2	2	381.2705383300781	3	380.870492	1139.58965	0.1273	4.8485E-05	0.004737	1.8042E-06	0.13204	5.0289E-05	380.8704893213052	46.523	1.0688	47.288	47.008	48.077	0.76519					52	20	5	0	0	0	0.0095341	1	17386	17386		96.936	71.945	1	59052000			53118	5109	38606	38913	51856	51856					0.025435191942506208
TELDLYKKM	9	Unmodified	_TELDLYKKM_					0	0	0		nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26;nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	MULTI-SECPEP	A375_MHC_IP_R2	2	571.2021484375	2	570.8021	1139.58965	-0.15776	-9.0052E-05	-0.45197	-0.00025798	-0.60973	-0.00034803	570.8018747628244	46.523	0.6089	47.288	47.008	47.617	0.76519					27	11	3	0	0	0	0.011191	1	17398	17398		133.05	85.304	1	18337000			53119	5109	38606	38913	51857	51857					0.025435191942506208
TELDLYKKM	9	Oxidation (M)	_TELDLYKKM(Oxidation (M))_		TELDLYKKM(1)		TELDLYKKM(140)	0	0	1		nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26;nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	MULTI-SECPEP	A375_MHC_IP_R1	1	579.1995849609375	2	578.799557	1155.58456	-0.2331	-0.00013492	-0.079362	-4.5935E-05	-0.31246	-0.00018085	578.7995387512923	31.948	0.665	31.948	31.718	32.383	0					31	12	4	0	0	0	0.011066	1	10263	10263		137.42	101.3	1	18808000			53120	5109	38606	38914	51858	51858		272			0.012992153316417898
TELDLYKKM	9	Oxidation (M)	_TELDLYKKM(Oxidation (M))_		TELDLYKKM(1)		TELDLYKKM(42)	0	0	1		nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26;nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	MULTI-SECPEP	A375_MHC_IP_R1	1	579.1992797851562	2	578.799557	1155.58456	-0.18545	-0.00010734	0.002998	1.7353E-06	-0.18246	-0.00010561	578.7995209757588	33.897	1.5691	33.897	33.19	34.759	0					48	30	2	0	0	0	0.20451	1	11111	11111		41.956	24.843	1	2519300			53121	5109	38606	38914	51859	51859		272			0.012992153316417898
TELDLYKKM	9	Oxidation (M)	_TELDLYKKM(Oxidation (M))_		TELDLYKKM(1)		TELDLYKKM(85)	0	0	1		nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26;nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	MULTI-MSMS	A375_MHC_IP_R2	2	386.9363098144531	3	386.20213	1155.58456	-0.16321	-6.3034E-05	-0.0082549	-3.1881E-06	-0.17147	-6.6222E-05	386.20216358331	31.298	0.76693	32.017	31.719	32.486	0.71857					51	14	5	0	0	0	0.019126	1	11022	11022		84.522	54.091	1	56750000			53122	5109	38606	38914	51860	51860		272			0.012992153316417898
TELDLYKKM	9	Oxidation (M)	_TELDLYKKM(Oxidation (M))_		TELDLYKKM(1)		TELDLYKKM(160)	0	0	1		nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26;nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	MULTI-SECPEP	A375_MHC_IP_R2	2	579.1989135742188	2	578.799557	1155.58456	-0.26796	-0.00015509	-0.60129	-0.00034803	-0.86925	-0.00050312	578.7992939681393	31.259	0.61292	31.978	31.77	32.383	0.71857					29	11	4	0	0	0	0.0085579	1	11038	11038		163.04	126.91	1	14695000			53123	5109	38606	38914	51861	51861		272			0.012992153316417898
TELDLYKKM	9	Oxidation (M)	_TELDLYKKM(Oxidation (M))_		TELDLYKKM(1)		TELDLYKKM(48)	0	0	1		nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26;nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	nc|ENSG00000139746|Q5T8P6-3|RBM26	MULTI-SECPEP	A375_MHC_IP_R2	2	579.1988525390625	2	578.799557	1155.58456	-0.08822	-5.1061E-05	-0.15228	-8.8137E-05	-0.24049	-0.0001392	578.799419955713	46.529	0.40844	47.294	47.058	47.466	0.76518					11	7	2	0	0	0	0.14606	1	17461	17461		47.594	18.513	1	2504300			53124	5109	38606	38914	51862	51862		272			0.012992153316417898
TELDQVRKW	9	Unmodified	_TELDQVRKW_					0	0	0		ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	MULTI-MSMS	A375_MHC_IP_R1	1	392.61181640625	3	392.212017	1173.61422	0.35553	0.00013944	-0.052253	-2.0494E-05	0.30328	0.00011895	392.2119665094714	42.917	1.2687	42.917	42.082	43.351	0					45	24	3	0	0	0	0.012968	2	14874	14847;14874		74.2	51.542	1	27965000			53125	5782	38607	38915	51863;51864	51864					0.034359153920149765
TELDQVRKW	9	Unmodified	_TELDQVRKW_					0	0	0		ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	MULTI-MSMS	A375_MHC_IP_R1	1	588.2136840820312	2	587.814387	1173.61422	-0.050806	-2.9865E-05	-0.044603	-2.6218E-05	-0.095409	-5.6083E-05	587.8142658716116	42.91	0.71296	42.91	42.587	43.3	0					35	13	4	0	0	0	0.0061124	1	14880	14880		133.05	71.695	1	9502300			53126	5782	38607	38915	51865	51865					0.034359153920149765
TELDQVRKW	9	Unmodified	_TELDQVRKW_					0	0	0		ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	MULTI-MSMS	A375_MHC_IP_R2	2	392.61199951171875	3	392.212017	1173.61422	-0.1301	-5.1027E-05	0.15483	6.0726E-05	0.02473	9.6995E-06	392.21203399041707	42.114	0.86734	42.887	42.605	43.472	0.7724					50	16	5	0	0	0	0.010171	2	15640	15612;15640		78.06	55.402	1	32525000			53127	5782	38607	38915	51866;51867	51867					0.034359153920149765
TELDQVRKW	9	Unmodified	_TELDQVRKW_					0	0	0		ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	MULTI-MSMS	A375_MHC_IP_R2	2	588.2135620117188	2	587.814387	1173.61422	-0.50974	-0.00029963	0.0066223	3.8927E-06	-0.50312	-0.00029574	587.8143127871796	42.117	0.76479	42.889	42.605	43.369	0.7724					38	14	4	0	0	0	0.0092755	1	15658	15658		103.82	59.965	1	9168000			53128	5782	38607	38915	51868	51868					0.034359153920149765
TELEAICPHY	10	Unmodified	_TELEAICPHY_					0	0	0		ENST00000527512.5_1_8:146171322-146176236:-|nuORF;ENST00000529378.1_1_8:146171322-146173480:-|nuORF;ENSG00000170631|ENST00000394909|ZNF16	ENST00000527512.5_1_8:146171322-146176236:-|nuORF	ENST00000527512.5_1_8:146171322-146176236:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	392.60467529296875	3	392.51823	1174.53286	0.16546	6.4945E-05	1.6203	0.00063601	1.7858	0.00070095	392.518368340374	20.224	0.55718	20.224	20.03	20.587	0					19	10	3	0	0	0	0.90853	1	5100	5100		6.1918	0.78914	1	4230100			53129	7527	38608	38916	51869	51869					-0.04742528362271514
TELEDARQKF	10	Unmodified	_TELEDARQKF_					0	0	0		ENST00000426925.5_1_3:15314864-15374612:-|nuORF;ENSG00000131370|ENST00000383791|SH3BP5	ENST00000426925.5_1_3:15314864-15374612:-|nuORF	ENST00000426925.5_1_3:15314864-15374612:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	413.2787780761719	3	412.878815	1235.61462	0.25309	0.0001045	-0.82132	-0.00033911	-0.56822	-0.00023461	412.87840956317	31.812	0.61457	31.812	31.565	32.179	0					19	11	3	0	0	0	0.83327	1	10253	10253		16.275	6.124	1	1923000			53130	4322	38609	38917	51870	51870					0.006232903211866869
TELEDARQKF	10	Unmodified	_TELEDARQKF_					0	0	0		ENST00000426925.5_1_3:15314864-15374612:-|nuORF;ENSG00000131370|ENST00000383791|SH3BP5	ENST00000426925.5_1_3:15314864-15374612:-|nuORF	ENST00000426925.5_1_3:15314864-15374612:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	413.27850341796875	3	412.878815	1235.61462	-0.021373	-8.8243E-06	-0.28328	-0.00011696	-0.30465	-0.00012578	412.8786410861355	31.128	0.35669	31.846	31.669	32.026	0.71857					10	6	2	0	0	0	0.91516	1	11030	11030		13.519	0	1	2448400			53131	4322	38609	38917	51871	51871					0.006232903211866869
TELEHWKRM	9	Unmodified	_TELEHWKRM_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-SECPEP	A375_MHC_IP_R1	1	411.0028991699219	3	410.541369	1228.60228	-0.11613	-4.7677E-05	1.1291	0.00046355	1.013	0.00041587	410.87612092411985	24.473	0.15053	24.473	24.347	24.498	0					4	2	2	0	0	0	0.80332	1	6925	6925		2.4985	0	1	802140			53132	3923	38610	38918	51872	51872					-0.002880246228642136
TELEKQFSQD	10	Unmodified	_TELEKQFSQD_					0	0	0			REV__ENST00000481145.1_1_1:89729385-89732242:-|nuORF	REV__ENST00000481145.1_1_1:89729385-89732242:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	613.1908569335938	2	612.790775	1223.567	-0.80702	-0.00049454	2.365	0.0014493	1.558	0.00095472	612.7913782415836	49.359	0.65756	50.117	49.843	50.5	0.75737					24	12	3	0	0	0	0.67512	1	18534	18534		15.248	2.206	1	4236600	+		53133	19885	38611	38919	51873	51873					-0.035844086696670274
TELELITW	8	Unmodified	_TELELITW_					0	0	0			REV__nc|ENSG00000189195|Q5XKL5|BTBD8	REV__nc|ENSG00000189195|Q5XKL5|BTBD8	MULTI-MSMS	A375_MHC_IP_R2	2	503.6678771972656	2	502.768583	1003.52261	-0.4892	-0.00024595	-1.4089	-0.00070837	-1.8981	-0.00095433	503.268388519634	85.415	0.86657	86.151	85.574	86.441	0.73602					39	16	3	0	0	0	0.7754	1	32421	32421		11.64	0.81637	1	2413500	+		53134	27432	38612	38920	51874	51874					0.02099231974796112
TELERAFGY	9	Unmodified	_TELERAFGY_					0	0	0		nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	MULTI-MSMS	A375_MHC_IP_R1	1	543.6661987304688	2	543.266739	1084.51892	-0.52505	-0.00028524	0.078919	4.2874E-05	-0.44613	-0.00024237	543.2667886109757	63.33	0.45972	63.33	63.018	63.477	0					14	8	2	0	0	0	0.018166	2	22869	22823;22869		103.42	53.486	1	2797700			53135	3048	38613	38921	51875;51876	51876					-0.019954377990416106
TELERAFGY	9	Unmodified	_TELERAFGY_					0	0	0		nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	MULTI-MSMS	A375_MHC_IP_R2	2	543.6661987304688	2	543.266739	1084.51892	-0.82899	-0.00045036	-2.8687	-0.0015584	-3.6976	-0.0020088	543.266642915455	62.823	0.80849	63.566	63.079	63.888	0.74263					35	15	4	0	0	0	0.038567	2	23725	23669;23725		65.474	30.542	1	3455800			53136	3048	38613	38921	51877;51878	51878					-0.019954377990416106
TELERAFGYY	10	Unmodified	_TELERAFGYY_					0	0	0		nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	MULTI-MSMS	A375_MHC_IP_R1	1	625.212158203125	2	624.798403	1247.58225	-0.54113	-0.0003381	0.035378	2.2104E-05	-0.50575	-0.00031599	624.7983775221235	75.639	0.60424	75.639	75.362	75.966	0					27	11	3	0	0	0	0.028893	1	27610	27610		81.915	52.834	1	9514100			53137	3048	38614	38922	51879	51879					-0.03163497081800415
TELERAFGYY	10	Unmodified	_TELERAFGYY_					0	0	0		nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	MULTI-MSMS	A375_MHC_IP_R2	2	624.6782836914062	2	624.798403	1247.58225	-0.83628	-0.00052251	0.0036975	2.3102E-06	-0.83259	-0.0005202	624.7983271795359	75.025	0.81252	75.762	75.365	76.178	0.73752					34	15	3	0	0	0	0.012014	1	28438	28438		91.085	54.958	1	6252400			53138	3048	38614	38922	51880	51880					-0.03163497081800415
TELERKLTF	9	Unmodified	_TELERKLTF_					0	0	0		nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-4|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	MULTI-SECPEP	A375_MHC_IP_R2	2	379.9607238769531	3	379.548518	1135.62372	0.043122	1.6367E-05	0.23806	9.0357E-05	0.28119	0.00010672	379.5487485103316	45.533	0.30223	46.298	46.15	46.453	0.76518					8	5	2	0	0	0	0.61758	1	17086	17086		12.175	0	1	2472200			53139	9934	38615	38923	51881	51881					0.061336836774898984
TELFKVKKVY	10	Unmodified	_TELFKVKKVY_					0	0	0		MYH8|p.N1489K|1|0.42|ENSG00000133020|chr17:10396614-10396614|A/C|missense_variant	MYH8|p.N1489K|1|0.42|ENSG00000133020|chr17:10396614-10396614|A/C|missense_variant	MYH8|p.N1489K|1|0.42|ENSG00000133020|chr17:10396614-10396614|A/C|missense_variant	MSMS	A375_MHC_IP_R1	1	418.963134765625	3	418.920063	1253.73836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.662	1	19.662	19.162	20.162	0								0	0	0	0.15417	1	4933	4933		3.8763	0.28927	1				53140	14436	38616	38924	51882	51882					0.1216399315947001
TELFMLEYT	9	Unmodified	_TELFMLEYT_					0	0	0			REV__ENST00000601949.5_1_19:41284205-41292865:+|nuORF	REV__ENST00000601949.5_1_19:41284205-41292865:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	573.0790405273438	2	573.773008	1145.53146	0.073547	4.22E-05	-2.1294	-0.0012218	-2.0559	-0.0011796	573.771016260727	112.31	0.35806	112.31	112.13	112.48	0					9	6	2	0	0	0	0.55359	1	41142	41142		21.747	0	1	1310800	+		53141	26506	38617	38925	51883	51883					-0.035481624510339316
TELFRNSF	8	Unmodified	_TELFRNSF_					0	0	0			REV__ENST00000589215.5_1_18:21087981-21111645:+|nuORF	REV__ENST00000589215.5_1_18:21087981-21111645:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.10150146484375	2	507.256174	1012.49779	-0.33263	-0.00016873	-0.39293	-0.00019932	-0.72556	-0.00036805	507.2556544849942	46.169	0.35468	46.169	45.941	46.295	0					10	6	2	0	0	0	0.95423	1	16102	16102		18.135	7.9516	1	1155900	+		53142	26420	38618	38926	51884	51884					-0.007954031079066226
TELGLFNKLS	10	Unmodified	_TELGLFNKLS_					0	0	0			REV__BRINP2|p.E500K|1|0.22|ENSG00000198797|chr1:177280674-177280674|G/A|missense_variant	REV__BRINP2|p.E500K|1|0.22|ENSG00000198797|chr1:177280674-177280674|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	562.2149047851562	2	561.313689	1120.61282	-0.65671	-0.00036862	0.29345	0.00016472	-0.36326	-0.0002039	561.3136714732057	44.526	0.61053	45.296	45.035	45.646	0.7691					20	11	3	0	0	0	0.70496	1	16641	16641		10.074	1.3285	1	2066600	+		53143	15529	38619	38927	51885	51885					0.05734281303239186
TELGLFNKLS	10	Unmodified	_TELGLFNKLS_					0	0	0			REV__BRINP2|p.E500K|1|0.22|ENSG00000198797|chr1:177280674-177280674|G/A|missense_variant	REV__BRINP2|p.E500K|1|0.22|ENSG00000198797|chr1:177280674-177280674|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	561.313689	1120.61282	-0.65671	-0.00036862	0.29345	0.00016472	-0.36326	-0.0002039	561.3136714732057	44.526	0.61053	45.296	45.035	45.646	0.7691	-0.11644	-0.00015942	NaN	10.074	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2066600	+		53144	15529	38619	38927							0.05734281303239186
TELGNQLEYN	10	Unmodified	_TELGNQLEYN_					0	0	0		nc|ENSG00000149930|Q9UL54-2|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-3|TAOK2	nc|ENSG00000149930|Q9UL54-2|TAOK2	nc|ENSG00000149930|Q9UL54-2|TAOK2	MSMS	A375_MHC_IP_R1	1	590.7037963867188	2	590.777667	1179.54078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.39	1	34.39	33.89	34.89	0								0	0	0	0.14483	1	11329	11329		27.629	1.3607	1				53145	5834	38620	38928	51886	51886					-0.04180677841122815
TELHHLMI	8	Unmodified	_TELHHLMI_					0	0	0			REV__ENST00000456360.5_1_Y:23556925-23559248:-|nuORF	REV__ENST00000456360.5_1_Y:23556925-23559248:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	496.6763916015625	2	497.262945	992.511337	-0.40715	-0.00020246	2.3977	0.0011923	1.9906	0.00098984	497.26528075852264	60.827	0.40795	60.827	60.514	60.922	0					11	7	3	0	0	0	0.90224	1	21933	21933		26.341	0	1	708880	+		53146	24935	38621	38929	51887	51887					0.014781313996763856
TELHKLLAH	9	Unmodified	_TELHKLLAH_					0	0	0			REV__AOX1|p.G342E|1|0.48|ENSG00000138356|chr2:200609101-200609101|G/A|missense_variant	REV__AOX1|p.G342E|1|0.48|ENSG00000138356|chr2:200609101-200609101|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	531.70849609375	2	531.308741	1060.60293	-0.63352	-0.0003366	0.44431	0.00023607	-0.18921	-0.00010053	531.3089004416386	50.382	0.61388	50.382	50.049	50.663	0					25	11	3	0	0	0	0.52144	1	17862	17862		11.64	2.2572	1	2274700	+		53147	15415	38622	38930	51888	51888					0.07505138088504282
TELHKWKLWSR	11	Unmodified	_TELHKWKLWSR_					0	0	0			REV__ENST00000261415.11_1_5:74715243-74722230:-|nuORF	REV__ENST00000261415.11_1_5:74715243-74722230:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	494.5013732910156	3	495.277132	1482.80957	-0.30393	-0.00015053	0.051831	2.5671E-05	-0.2521	-0.00012486	495.2768540484603	85.947	0.15189	86.68	86.592	86.743	0.73301					4	2	2	0	0	0	0.99883	1	32686	32686		1.2148	0.20126	1	666990	+		53148	23185	38623	38931	51889	51889					0.08747505916835507
TELIIKLM	8	Unmodified	_TELIIKLM_					0	0	0			REV__ENST00000568372.5_1_15:55651836-55651908:-|nuORF	REV__ENST00000568372.5_1_15:55651836-55651908:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	960.5211181640625	1	960.579816	959.57254	0.23103	0.00022192	-1.4119	-0.0013563	-1.1809	-0.0011344	960.5774325578129	117.76	0.25235	117.76	117.66	117.92	0					5	4	2	0	0	0	0.7779	1	43263	43263		2.5775	0	1	2379200	+		53149	26261	38624	38932	51890	51890					0.09113643379112091
TELIKCLKQY	10	Unmodified	_TELIKCLKQY_					0	0	0			REV__SLC9C2|p.E775K|1|0.3|ENSG00000162753|chr1:173526705-173526705|C/T|missense_variant	REV__SLC9C2|p.E775K|1|0.3|ENSG00000162753|chr1:173526705-173526705|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	619.7427368164062	2	619.844299	1237.67404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.207	1	64.207	63.707	64.707	0								0	0	0	0.15332	1	23226	23226		10.074	0	1		+		53150	28009	38625	38933	51891	51891					0.06471470011001657
TELKGIKLRK	10	Unmodified	_TELKGIKLRK_					0	0	0		SPTAN1|p.E676K|1|0.21|ENSG00000197694|chr9:128583802-128583802|G/A|missense_variant	SPTAN1|p.E676K|1|0.21|ENSG00000197694|chr9:128583802-128583802|G/A|missense_variant	SPTAN1|p.E676K|1|0.21|ENSG00000197694|chr9:128583802-128583802|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	395.97607421875	3	395.92744	1184.76049	-0.20509	-8.12E-05	0.25638	0.00010151	0.051295	2.0309E-05	395.92750155601794	19.384	0.69068	19.384	19.238	19.928	0					31	13	3	0	0	0	0.71946	1	4697	4697		3.5871	0	1	8806300			53151	29242	38626	38934	51892	51892					0.17550217627876918
TELKKENF	8	Unmodified	_TELKKENF_					0	0	0		nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	MULTI-MSMS	A375_MHC_IP_R1	1	504.69732666015625	2	504.771657	1007.52876	-0.35753	-0.00018047	-0.89625	-0.0004524	-1.2538	-0.00063287	505.2725701098146	55.406	0.50925	55.406	55.126	55.635	0					15	9	2	0	0	0	0.74466	1	19769	19769		21.747	0	1	1856300			53152	4830	38627	38935	51893	51893					0.02529750206326753
TELKKENF	8	Unmodified	_TELKKENF_					0	0	0		nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	MULTI-MATCH	A375_MHC_IP_R2	2		2	504.771657	1007.52876	-0.89541	-0.00045198	-0.11115	-5.6108E-05	-1.0066	-0.00050808	505.2729816574713	54.528	0.50585	55.278	55.018	55.523	0.75075	-0.063713	0.00021026	NaN	21.747	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1557200			53153	4830	38627	38935							0.02529750206326753
TELKMDFLR	9	Unmodified	_TELKMDFLR_					0	0	0		DACH1|p.E594K|1|0.41|ENSG00000276644|chr13:71479259-71479259|C/T|missense_variant;nc|ENSG00000276644|Q9UI36-4|DACH1;nc|ENSG00000276644|Q9UI36-3|DACH1;ENSG00000276644|ENST00000613252|DACH1;nc|ENSG00000276644|Q9UI36|DACH1	DACH1|p.E594K|1|0.41|ENSG00000276644|chr13:71479259-71479259|C/T|missense_variant	DACH1|p.E594K|1|0.41|ENSG00000276644|chr13:71479259-71479259|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	385.5833435058594	3	384.874236	1151.60088	0.39126	0.00015058	-2.086	-0.00080284	-1.6947	-0.00065225	384.87325792577354	20.449	0.40708	20.449	20.283	20.69	0					9	7	2	0	0	0	0.76187	1	5230	5230		4.5289	0	1	936790			53154	707	38628	38936	51894	51894					0.031143412883920973
TELKMWTRVF	10	Unmodified	_TELKMWTRVF_					0	0	0			REV__chr3:98867438-98881540|204|17.5|0.23|6.26|-|0|TE_info:L1PA5,L1PA5_dup2059,L1,LINE,acceptor,-,98865721,98867438|None,DCBLD2|18	REV__chr3:98867438-98881540|204|17.5|0.23|6.26|-|0|TE_info:L1PA5,L1PA5_dup2059,L1,LINE,acceptor,-,98865721,98867438|None,DCBLD2|18	MULTI-SECPEP	A375_MHC_IP_R1	1	436.9384460449219	3	437.569036	1309.68528	-0.041664	-1.8231E-05	1.3247	0.00057967	1.2831	0.00056144	437.5696660462391	20.402	0.4066	20.402	20.18	20.587	0					12	7	3	0	0	0	0.94587	1	5157	5157		1.9064	0.8928	1	1217500	+		53155	15750	38629	38937	51895	51895					0.04282292105108354
TELKRYFNRLK	11	Unmodified	_TELKRYFNRLK_					0	0	0			REV__ENSG00000138411|ENST00000644978|HECW2	REV__ENSG00000138411|ENST00000644978|HECW2	MULTI-SECPEP	A375_MHC_IP_R2	2	489.66815185546875	3	489.952537	1466.83578	-0.60993	-0.00029884	-1.5259	-0.00074761	-2.1358	-0.0010464	490.2857934471173	70.823	0.65759	71.557	71.2	71.857	0.73421					18	12	2	0	0	0	1.0012	1	26841	26841		0.073264	0	1	6842000	+		53156	19094	38630	38938	51896	51896					0.12103775088303337
TELKSFPREW	10	Unmodified	_TELKSFPREW_					0	0	0		ENST00000555474.5_1_14:67819743-67826513:-|nuORF;ENST00000553687.1_2_14:67820623-67826513:-|nuORF	ENST00000555474.5_1_14:67819743-67826513:-|nuORF	ENST00000555474.5_1_14:67819743-67826513:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	431.95916748046875	3	431.559305	1291.65609	-0.091759	-3.96E-05	-0.96746	-0.00041752	-1.0592	-0.00045712	431.5592337741681	55.784	1.7776	55.784	54.771	56.548	0					42	34	2	0	0	0	0.29004	1	19969	19969		40.714	23.876	1	3460900			53157	13407	38631	38939	51897	51897					0.02192471080525138
TELKSFPREW	10	Unmodified	_TELKSFPREW_					0	0	0		ENST00000555474.5_1_14:67819743-67826513:-|nuORF;ENST00000553687.1_2_14:67820623-67826513:-|nuORF	ENST00000555474.5_1_14:67819743-67826513:-|nuORF	ENST00000555474.5_1_14:67819743-67826513:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	431.95892333984375	3	431.559305	1291.65609	-0.3708	-0.00016002	-0.11391	-4.9159E-05	-0.48471	-0.00020918	431.55934372506226	55.019	0.66317	55.769	55.523	56.187	0.75075					28	12	3	0	0	0	0.29004	1	20787	20787		40.714	24.577	1	4575300			53158	13407	38631	38939	51898	51898					0.02192471080525138
TELLELNEKI	10	Unmodified	_TELLELNEKI_					0	0	0			REV__tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1	REV__tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1	MSMS	A375_MHC_IP_R1	1	401.2795104980469	3	401.227333	1200.66017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.809	1	42.809	42.309	43.309	0								0	0	0	0.15332	1	14851	14851		5.7834	0	1		+		53159	28655	38632	38940	51899	51899					0.06786515783551295
TELLKKLN	8	Unmodified	_TELLKKLN_					0	0	0			REV__ENSG00000203485|ENST00000392634|INF2	REV__ENSG00000203485|ENST00000392634|INF2	MULTI-SECPEP	A375_MHC_IP_R1	1	479.97967529296875	2	479.800217	957.585882	-0.067295	-3.2288E-05	-0.11085	-5.3186E-05	-0.17815	-8.5474E-05	479.8001000522658	22.242	0.30625	22.242	22.113	22.419	0					6	5	2	0	0	0	0.972	1	5911	5911		0	0	1	1406300	+		53160	22462	38633	38941	51900	51900					0.10539217482687491
TELLKQGQY	9	Unmodified	_TELLKQGQY_					0	0	0		ENST00000586523.1_1_18:43665917-43666256:-|nuORF;nc|ENSG00000152234|P25705-2|ATP5F1A;nc|ENSG00000152234|P25705-3|ATP5F1A;ENSG00000152234|ENST00000398752|ATP5F1A	ENST00000586523.1_1_18:43665917-43666256:-|nuORF	ENST00000586523.1_1_18:43665917-43666256:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	540.690185546875	2	540.290214	1078.56587	-0.67814	-0.00036639	0.21633	0.00011688	-0.46181	-0.00024951	540.2902939098744	61.117	0.66158	61.117	60.77	61.432	0					20	12	3	0	0	0	0.47368	1	22028	22028		34.102	0	1	3005900			53161	5954	38634	38942	51901	51901					0.029734217520854145
TELLKQGQY	9	Unmodified	_TELLKQGQY_					0	0	0		ENST00000586523.1_1_18:43665917-43666256:-|nuORF;nc|ENSG00000152234|P25705-2|ATP5F1A;nc|ENSG00000152234|P25705-3|ATP5F1A;ENSG00000152234|ENST00000398752|ATP5F1A	ENST00000586523.1_1_18:43665917-43666256:-|nuORF	ENST00000586523.1_1_18:43665917-43666256:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	539.642578125	2	540.290214	1078.56587	-1.1577	-0.00062552	0.078776	4.2562E-05	-1.079	-0.00058296	540.2902651860597	60.322	0.71308	61.067	60.751	61.464	0.74503					20	13	2	0	0	0	0.60917	1	22768	22768		25.399	11.784	1	3505800			53162	5954	38634	38942	51902	51902					0.029734217520854145
TELLLKEGF	9	Unmodified	_TELLLKEGF_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-SECPEP	A375_MHC_IP_R1	1	525.697265625	2	525.297507	1048.58046	-0.45553	-0.00023929	-0.097036	-5.0973E-05	-0.55256	-0.00029026	525.2973105981863	81.517	1.165	81.517	81.151	82.316	0					44	22	3	0	0	0	0.011031	1	29776	29776		140.63	64.872	1	9336800			53163	9124	38635	38943	51903	51903					0.05811493900228015
TELLLKEGF	9	Unmodified	_TELLLKEGF_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-SECPEP	A375_MHC_IP_R2	2	526.0409545898438	2	525.297507	1048.58046	-0.55022	-0.00028903	-0.19843	-0.00010424	-0.74865	-0.00039327	525.2972639695879	80.609	1.0686	81.353	81.062	82.13	0.74474					47	20	3	0	0	0	0.016541	1	30706	30706		107.1	31.339	1	8660500			53164	9124	38635	38943	51904	51904					0.05811493900228015
TELLPSTQY	9	Unmodified	_TELLPSTQY_					0	0	0			REV__nc|ENSG00000006747|Q9Y6U3-3|SCIN	REV__nc|ENSG00000006747|Q9Y6U3-3|SCIN	MSMS	A375_MHC_IP_R2	2	526.1981811523438	2	526.268947	1050.52334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.75	1	81.495	80.995	81.995	0.74474								0	0	0	0.14359	1	30662	30662		28.487	5.3384	1		+		53165	16145	38636	38944	51905	51905					0.00010026623863268469
TELLRDVAAW	10	Unmodified	_TELLRDVAAW_					0	0	0		nc|ENSG00000167646|Q8N9W5-7|DNAAF3;ENSG00000167646|ENST00000524407|DNAAF3;nc|ENSG00000167646|Q8N9W5-6|DNAAF3;nc|ENSG00000167646|Q8N9W5-3|DNAAF3	nc|ENSG00000167646|Q8N9W5-7|DNAAF3	nc|ENSG00000167646|Q8N9W5-7|DNAAF3	MULTI-MSMS	A375_MHC_IP_R1	1	587.7162475585938	2	587.316763	1172.61897	-0.56888	-0.00033411	0.44762	0.00026289	-0.12126	-7.1218E-05	587.3170515140971	30.701	0.55599	30.701	30.503	31.059	0					17	10	3	0	0	0	0.70012	1	9802	9802		12.241	2.6967	1	3399800			53166	7204	38637	38945	51906	51906					0.039567995347169926
TELLRDVAAW	10	Unmodified	_TELLRDVAAW_					0	0	0		nc|ENSG00000167646|Q8N9W5-7|DNAAF3;ENSG00000167646|ENST00000524407|DNAAF3;nc|ENSG00000167646|Q8N9W5-6|DNAAF3;nc|ENSG00000167646|Q8N9W5-3|DNAAF3	nc|ENSG00000167646|Q8N9W5-7|DNAAF3	nc|ENSG00000167646|Q8N9W5-7|DNAAF3	MULTI-SECPEP	A375_MHC_IP_R1	1	392.2799377441406	3	391.880267	1172.61897	-0.15783	-6.1851E-05	0.15937	6.2455E-05	0.0015397	6.0336E-07	391.880262434519	30.718	0.80916	30.718	30.402	31.211	0					34	15	3	0	0	0	0.91556	1	9764	9764		5.7834	0	1	12599000			53167	7204	38637	38945	51907	51907					0.039567995347169926
TELLRDVAAW	10	Unmodified	_TELLRDVAAW_					0	0	0		nc|ENSG00000167646|Q8N9W5-7|DNAAF3;ENSG00000167646|ENST00000524407|DNAAF3;nc|ENSG00000167646|Q8N9W5-6|DNAAF3;nc|ENSG00000167646|Q8N9W5-3|DNAAF3	nc|ENSG00000167646|Q8N9W5-7|DNAAF3	nc|ENSG00000167646|Q8N9W5-7|DNAAF3	MULTI-MSMS	A375_MHC_IP_R2	2	587.7164306640625	2	587.316763	1172.61897	-0.81671	-0.00047967	0.45567	0.00026762	-0.36104	-0.00021204	587.3168722228216	30.014	0.35493	30.713	30.537	30.892	0.69872					11	6	2	0	0	0	0.66308	1	10537	10537		16.149	2.2431	1	3539300			53168	7204	38637	38945	51908	51908					0.039567995347169926
TELLREEPY	9	Unmodified	_TELLREEPY_					0	0	0			REV__ENST00000406134.5_1_2:47637401-47637506:+|nuORF	REV__ENST00000406134.5_1_2:47637401-47637506:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	575.6920776367188	2	575.292953	1148.57135	-0.20567	-0.00011832	-0.57684	-0.00033185	-0.78251	-0.00045017	575.2923980527307	34.758	0.40429	34.758	34.456	34.861	0					12	7	3	0	0	0	0.17328	1	11473	11473		39.957	1.9833	1	5321100	+		53169	24442	38638	38946	51909	51909					0.003011005439020664
TELLRKIIKEF	11	Unmodified	_TELLRKIIKEF_					0	0	0			REV__nc|ENSG00000179603|O00222-3|GRM8	REV__nc|ENSG00000179603|O00222-3|GRM8	MULTI-MSMS	A375_MHC_IP_R2	2	464.6553649902344	3	463.953655	1388.83914	-0.70099	-0.00032522	-0.016841	-7.8134E-06	-0.71783	-0.00033304	463.95372936069975	62.413	0.60978	63.155	62.774	63.383	0.74263					27	11	4	0	0	0	0.73795	1	23718	23718		1.3296	0.11481	1	5966300	+		53170	21572	38639	38947	51910	51910					0.160270251422844
TELLYKALIK	10	Unmodified	_TELLYKALIK_					0	0	0			REV__ENST00000491027.5_1_7:105903822-105925330:-|nuORF	REV__ENST00000491027.5_1_7:105903822-105925330:-|nuORF	MSMS	A375_MHC_IP_R2	2	397.9829406738281	3	397.91643	1190.72746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.92	1	19.523	19.023	20.023	0.60308								0	0	0	0.15491	1	5658	5658		2.6312	1.4164	1		+		53171	17412	38640	38948	51911	51911					0.13972590785169814
TELLYKALIK	10	Unmodified	_TELLYKALIK_					0	0	0			REV__ENST00000491027.5_1_7:105903822-105925330:-|nuORF	REV__ENST00000491027.5_1_7:105903822-105925330:-|nuORF	MSMS	A375_MHC_IP_R2	2	397.923095703125	3	397.91643	1190.72746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.16	1	19.763	19.263	20.263	0.60308								0	0	0	0.15541	1	5855	5855		1.5923	0.37745	1		+		53172	17412	38640	38948	51912	51912					0.13972590785169814
TELLYYLKNL	10	Unmodified	_TELLYYLKNL_					0	0	0			REV__ENSG00000151838|ENST00000537690|CCDC175	REV__ENSG00000151838|ENST00000537690|CCDC175	MULTI-MSMS	A375_MHC_IP_R2	2	424.3080749511719	3	423.907823	1268.70164	-0.075129	-3.1848E-05	0.048495	2.0557E-05	-0.026634	-1.129E-05	423.9078655324333	87.889	0.50873	88.621	88.316	88.825	0.7318					14	9	2	0	0	0	0.64579	1	33502	33502		17.443	1.704	1	1204600	+		53173	19779	38641	38949	51913	51913					0.07803696542896432
TELNFYIIQI	10	Unmodified	_TELNFYIIQI_					0	0	0			REV__nc|ENSG00000292363|Q9HC73-2|CRLF2	REV__nc|ENSG00000292363|Q9HC73-2|CRLF2	MULTI-MSMS	A375_MHC_IP_R1	1	418.9629211425781	3	418.564056	1252.67034	-0.11358	-4.754E-05	-2.0022	-0.00083805	-2.1158	-0.00088559	418.56299840249403	23.784	0.45657	23.784	23.635	24.092	0					19	8	3	0	0	0	0.53147	1	6625	6625		25.997	7.2762	1	8406800	+		53174	22582	38642	38950	51914	51914					0.05411123508815763
TELPALFL	8	Unmodified	_TELPALFL_					0	0	0		ENSG00000154237|ENST00000388948|LRRK1;LRRK1|p.I1366Nfs*21|1|0.31|ENSG00000154237|chr15:101054981-101054982|-/A|frameshift_variant;LRRK1|p.L655Wfs*107|1|0.15|ENSG00000154237|chr15:101022492-101022492|C/-|frameshift_variant	ENSG00000154237|ENST00000388948|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	MULTI-SECPEP	A375_MHC_IP_R1	1	451.6033020019531	2	452.262936	902.51132	-0.53931	-0.00024391	-1.6121	-0.00072908	-2.1514	-0.000973	452.26220910407176	140.47	0.41412	140.47	140.23	140.65	0					14	7	3	0	0	0	0.972	1	53884	53884		0.79363	0	1	1909000			53175	6073	38643	38951	51915	51915					0.05616454671314841
TELPDNLKAL	10	Unmodified	_TELPDNLKAL_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000115423|Q9C0G6-4|DNAH6;ENSG00000115423|ENST00000389394|DNAH6	nc|ENSG00000114841|Q9P2D7-8|DNAH1;nc|ENSG00000115423|Q9C0G6-4|DNAH6	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	A375_MHC_IP_R2	2	372.2771911621094	3	371.876523	1112.60774	0.21199	7.8835E-05	1.3553	0.00050402	1.5673	0.00058285	371.87710607798044	35.318	0.65698	36.081	35.778	36.435	0.76338					24	12	3	0	0	0	0.91909	1	12840	12840		3.0723	1.9625	1	3608500			53176	3248;3308	38644	38952	51916	51916					0.05593977440616982
TELPKAEKW	9	Unmodified	_TELPKAEKW_					0	0	0		ENSG00000240682|ENST00000393295|ISY1;nc|ENSG00000240682|Q9ULR0-2|ISY1;nc|ENSG00000240682|Q9ULR0-1|ISY1	ENSG00000240682|ENST00000393295|ISY1	ENSG00000240682|ENST00000393295|ISY1	MULTI-MSMS	A375_MHC_IP_R1	1	368.2695007324219	3	367.86948	1100.58661	0.266	9.7854E-05	0.077439	2.8487E-05	0.34344	0.00012634	367.8694670175841	34.733	1.9331	34.733	34.303	36.236	0					75	37	6	0	0	0	0.010055	2	11415	11415;11523		104.48	60.092	1	258130000			53177	9776	38645	38953	51917;51918	51917					0.04034012131751297
TELPKAEKW	9	Unmodified	_TELPKAEKW_					0	0	0		ENSG00000240682|ENST00000393295|ISY1;nc|ENSG00000240682|Q9ULR0-2|ISY1;nc|ENSG00000240682|Q9ULR0-1|ISY1	ENSG00000240682|ENST00000393295|ISY1	ENSG00000240682|ENST00000393295|ISY1	MULTI-SECPEP	A375_MHC_IP_R1	1	551.7002563476562	2	551.300581	1100.58661	-0.54641	-0.00030124	-0.12508	-6.8955E-05	-0.67149	-0.00037019	551.3004827280151	34.733	1.1173	34.733	34.405	35.522	0					46	21	3	0	0	0	0.018709	1	11424	11424		143.21	143.21	1	108910000			53178	9776	38645	38953	51919	51919					0.04034012131751297
TELPKAEKW	9	Unmodified	_TELPKAEKW_					0	0	0		ENSG00000240682|ENST00000393295|ISY1;nc|ENSG00000240682|Q9ULR0-2|ISY1;nc|ENSG00000240682|Q9ULR0-1|ISY1	ENSG00000240682|ENST00000393295|ISY1	ENSG00000240682|ENST00000393295|ISY1	MULTI-MSMS	A375_MHC_IP_R2	2	551.6998291015625	2	551.300581	1100.58661	-1.2224	-0.00067389	0.28359	0.00015635	-0.93877	-0.00051754	551.3007142327991	34.024	1.0158	34.776	34.348	35.364	0.75225					48	19	4	0	0	0	0.0066114	1	12157	12157		132.13	88.362	1	72514000			53179	9776	38645	38953	51920	51920					0.04034012131751297
TELPKAEKW	9	Unmodified	_TELPKAEKW_					0	0	0		ENSG00000240682|ENST00000393295|ISY1;nc|ENSG00000240682|Q9ULR0-2|ISY1;nc|ENSG00000240682|Q9ULR0-1|ISY1	ENSG00000240682|ENST00000393295|ISY1	ENSG00000240682|ENST00000393295|ISY1	MULTI-SECPEP	A375_MHC_IP_R2	2	368.2694091796875	3	367.86948	1100.58661	-0.24733	-9.0984E-05	0.26315	9.6805E-05	0.015824	5.8213E-06	367.8695515332174	34.009	2.0766	34.761	34.399	36.475	0.75225					86	40	5	0	0	0	0.040539	1	12149	12149		91.085	60.381	1	199440000			53180	9776	38645	38953	51921	51921					0.04034012131751297
TELPSAVKF	9	Unmodified	_TELPSAVKF_					0	0	0			REV__ENSG00000178177|ENST00000635767|LCORL	REV__ENSG00000178177|ENST00000635767|LCORL	MULTI-MSMS	A375_MHC_IP_R1	1	496.6763916015625	2	496.276575	990.538597	-0.4162	-0.00020655	0.48181	0.00023911	0.065614	3.2563E-05	496.2766681375713	60.943	0.76395	60.943	60.618	61.382	0					29	14	3	0	0	0	0.054426	1	21933	21933		62.573	4.8507	1	4730700	+		53181	21491	38646	38954	51922	51922					0.04294938211717181
TELPSAVKF	9	Unmodified	_TELPSAVKF_					0	0	0			REV__ENSG00000178177|ENST00000635767|LCORL	REV__ENSG00000178177|ENST00000635767|LCORL	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	496.276575	990.538597	-0.4162	-0.00020655	0.48181	0.00023911	0.065614	3.2563E-05	496.2766681375713	60.943	0.76395	60.943	60.618	61.382	0	0.052414	9.0175E-06	NaN	62.573	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4730700	+		53182	21491	38646	38954							0.04294938211717181
TELQALLFLL	10	Unmodified	_TELQALLFLL_					0	0	0		ENSG00000170782|ENST00000379829|OR10A4	ENSG00000170782|ENST00000379829|OR10A4	ENSG00000170782|ENST00000379829|OR10A4	MULTI-SECPEP	A375_MHC_IP_R2	2	387.4451904296875	3	387.56903	1159.68526	-0.63566	-0.00024636	0.085572	3.3165E-05	-0.55009	-0.0002132	387.9045477427199	37.297	0.25475	38.068	37.968	38.223	0.7709					5	4	2	0	0	0	0.91932	1	13630	13630		11.518	6.221	1	951800			53183	7538	38647	38955	51923	51923					0.11180615376792957
TELQKRMNSI	10	Unmodified	_TELQKRMNSI_					0	0	0			REV__CON__Q9R0H5	REV__CON__Q9R0H5	MULTI-SECPEP	A375_MHC_IP_R2	2	406.9690856933594	3	407.220295	1218.63906	-0.31046	-0.00012642	-1.904	-0.00077536	-2.2145	-0.00090179	407.5545553907724	20.238	0.71089	20.849	20.499	21.21	0.61029					28	13	3	0	0	0	0.93232	1	6188	6188		7.4771	1.2852	1	1915200	+	+	53184	15904	38648	38956	51924	51924					0.038482272030705644
TELQNINEY	9	Unmodified	_TELQNINEY_					0	0	0		CHD5|p.M1281I|1|0.08|ENSG00000116254|chr1:6128106-6128106|C/T|missense_variant	CHD5|p.M1281I|1|0.08|ENSG00000116254|chr1:6128106-6128106|C/T|missense_variant	CHD5|p.M1281I|1|0.08|ENSG00000116254|chr1:6128106-6128106|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	562.1865844726562	2	562.266936	1122.51932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.186	1	26.186	25.686	26.686	0								0	0	0	0.1521	1	7770	7770		18.146	0	1				53185	385	38649	38957	51925	51925					-0.03704062869860536
TELQNMNEY	9	Unmodified	_TELQNMNEY_					0	0	0		ENSG00000116254|ENST00000262450|CHD5	ENSG00000116254|ENST00000262450|CHD5	ENSG00000116254|ENST00000262450|CHD5	MULTI-SECPEP	A375_MHC_IP_R1	1	570.6661376953125	2	571.245146	1140.47574	-0.34947	-0.00019963	-1.0245	-0.00058524	-1.374	-0.00078487	571.2447073962021	83.48	1.4674	83.48	82.924	84.391	0					36	28	2	0	0	0	0.75466	1	30679	30679		12.532	5.8084	1	3318700			53186	3390	38650	38958	51926	51926					-0.08887995638633583
TELQTKLY	8	Unmodified	_TELQTKLY_					0	0	0			REV__ENSG00000257594|ENST00000529983|GALNT4	REV__ENSG00000257594|ENST00000529983|GALNT4	MULTI-SECPEP	A375_MHC_IP_R1	1	498.6737060546875	2	498.274032	994.533512	0.065298	3.2536E-05	-0.62975	-0.00031379	-0.56446	-0.00028125	498.2735838334216	48.822	0.45652	48.822	48.476	48.933	0					13	8	2	0	0	0	0.91495	1	17274	17274		24.674	0	1	1664800	+		53187	22892	38651	38959	51927	51927					0.03602634349078926
TELRGLAPLT	10	Unmodified	_TELRGLAPLT_					0	0	0		ENST00000173229.6_1_17:9144472-9144925:+|nuORF	ENST00000173229.6_1_17:9144472-9144925:+|nuORF	ENST00000173229.6_1_17:9144472-9144925:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	357.9449157714844	3	357.544996	1069.61316	-0.53805	-0.00019238	-0.32112	-0.00011481	-0.85916	-0.00030719	357.544671181803	37.497	0.56149	38.268	38.02	38.581	0.7709					18	10	2	0	0	0	0.61179	1	13748	13748		19.987	2.5443	1	4006100			53188	10069	38652	38960	51928	51928					0.08113701023080466
TELRLPKPSG	10	Unmodified	_TELRLPKPSG_					0	0	0		ENST00000496385.5_1_22:26849136-26861668:-|nuORF	ENST00000496385.5_1_22:26849136-26861668:-|nuORF	ENST00000496385.5_1_22:26849136-26861668:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	549.71875	2	549.319306	1096.62406	-1.02	-0.00056029	0.13364	7.3413E-05	-0.88633	-0.00048688	549.3193130667263	26.831	0.56286	27.491	27.262	27.825	0.65992					25	10	3	0	0	0	0.83355	1	9102	9102		12.241	0	1	12773000			53189	12724	38653	38961	51929	51929					0.07961103397360603
TELSGRKA	8	Unmodified	_TELSGRKA_					0	0	0			REV__nc|ENSG00000135913|Q86T82-2|USP37	REV__nc|ENSG00000135913|Q86T82-2|USP37	MSMS	A375_MHC_IP_R2	2	431.28826904296875	2	431.243067	860.47158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.02	1	139.08	138.58	139.58	0.059906								0	0	0	0.16876	1	54488	54488		0.69038	0	1		+		53190	18898	38654	38962	51930	51930					0.03576327720611516
TELSKVYEK	9	Unmodified	_TELSKVYEK_					0	0	0			REV__nc|ENSG00000122417|Q9ULJ1-5|ODF2L	REV__nc|ENSG00000122417|Q9ULJ1-5|ODF2L	MULTI-MSMS	A375_MHC_IP_R1	1	366.6009521484375	3	366.201007	1095.58119	0.072148	2.6421E-05	0.9001	0.00032962	0.97225	0.00035604	366.2011538566829	27.041	0.90731	27.041	26.575	27.482	0					38	17	4	0	0	0	0.3489	1	8135	8135		27.223	4.4483	1	11674000	+		53191	18204	38655	38963	51931	51931					0.03722288549283803
TELSMPIQSHV	11	Unmodified	_TELSMPIQSHV_					0	0	0		ENST00000546661.1_1_12:53910923-53918651:-|nuORF;nc|ENSG00000170653|P17544-4|ATF7;nc|ENSG00000170653|P17544-2|ATF7;nc|ENSG00000170653|P17544-3|ATF7;ENSG00000170653|ENST00000420353|ATF7;nc|ENSG00000170653|P17544-1|ATF7	ENST00000546661.1_1_12:53910923-53918651:-|nuORF	ENST00000546661.1_1_12:53910923-53918651:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	415.1341857910156	3	414.544667	1240.61217	0.10694	4.4331E-05	1.019	0.00042241	1.1259	0.00046674	414.5450186530566	68.796	0.35523	69.531	69.373	69.728	0.73511					10	6	2	0	0	0	0.94168	1	26117	26117		8.7518	4.9059	1	694270			53192	7529	38656	38964	51932	51932					0.0014911859186668153
TELSSHQPTS	10	Unmodified	_TELSSHQPTS_					0	0	0			REV__ENSG00000173699|ENST00000433428|SPATA3	REV__ENSG00000173699|ENST00000433428|SPATA3	MSMS	A375_MHC_IP_R1	1	543.73681640625	2	543.756735	1085.49892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.352	1	54.352	53.852	54.852	0								0	0	0	0.15158	1	19398	19398		14.838	0	1		+		53193	21241	38657	38965	51933	51933					-0.04041233529665078
TELTPKQEF	9	Unmodified	_TELTPKQEF_					0	0	0		tr|U7T202|U7T202_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00790PE=3SV=1	tr|U7T202|U7T202_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00790PE=3SV=1	tr|U7T202|U7T202_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00790PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	364.96929931640625	3	364.85724	1091.54989	0.2421	8.8332E-05	0.83636	0.00030515	1.0785	0.00039348	364.85631929586816	28.405	0.55715	28.405	28.238	28.795	0					17	10	2	0	0	0	0.74412	1	8926	8926		3.8763	2.4212	1	2995900			53194	29915	38658	38966	51934	51934					0.007777155151643456
TELTPPDNQL	10	Unmodified	_TELTPPDNQL_					0	0	0			REV__nc|ENSG00000198648|Q9UEW8-2|STK39	REV__nc|ENSG00000198648|Q9UEW8-2|STK39	MULTI-SECPEP	A375_MHC_IP_R1	1	375.9521484375	3	376.524149	1126.55062	0.57467	0.00021638	1.1191	0.00042137	1.6938	0.00063775	376.85872745223037	22.899	0.30068	22.899	22.723	23.024	0					8	5	2	0	0	0	0.6774	1	6247	6247		18.721	0	1	835610	+		53195	22392	38659	38967	51935	51935					-0.007594898357865532
TELTQGHYLY	10	Unmodified	_TELTQGHYLY_					0	0	0			REV__ENST00000509485.5_1_5:135390439-135392141:+|nuORF	REV__ENST00000509485.5_1_5:135390439-135392141:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	408.94110107421875	3	408.868027	1223.58225	-0.11993	-4.9038E-05	0.88809	0.00036311	0.76815	0.00031407	408.86805919715334	46.365	0.55387	46.365	45.992	46.545	0					23	10	3	0	0	0	0.91556	1	16319	16319		8.9762	1.9392	1	4033300	+		53196	18133	38660	38968	51936	51936					-0.020594970817910507
TELVNVNVY	9	Unmodified	_TELVNVNVY_					0	0	0		PCDHA7|p.D695N|1|0.45|ENSG00000204963|chr5:140836466-140836466|G/A|missense_variant	PCDHA7|p.D695N|1|0.45|ENSG00000204963|chr5:140836466-140836466|G/A|missense_variant	PCDHA7|p.D695N|1|0.45|ENSG00000204963|chr5:140836466-140836466|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	526.17724609375	2	525.776939	1049.53933	-0.34603	-0.00018193	0.72847	0.00038301	0.38245	0.00020108	525.7774513919019	110.97	0.71616	110.97	110.65	111.36	0					25	13	2	0	0	0	0.46045	1	40692	40692		29.082	0	1	2491500			53197	15126	38661	38969	51937	51937					0.016537328607682866
TELWEQMHR	9	Unmodified	_TELWEQMHR_					0	0	0			REV__ENST00000357971.7_1_14:75520149-75528458:-|nuORF	REV__ENST00000357971.7_1_14:75520149-75528458:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	410.3065490722656	3	410.52924	1228.56589	-0.32884	-0.000135	4.1972	0.0017231	3.8683	0.0015881	410.86505459242255	22.183	0.20259	22.803	22.643	22.846	0.61932					5	3	2	0	0	0	0.80005	1	6974	6974		2.7352	0	1	348690	+		53198	18081	38662	38970	51938	51938					-0.039249015195764514
TELWEQMHR	9	Unmodified	_TELWEQMHR_					0	0	0			REV__ENST00000357971.7_1_14:75520149-75528458:-|nuORF	REV__ENST00000357971.7_1_14:75520149-75528458:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	410.52924	1228.56589	0.43303	0.00017777	6.5711	0.0026976	7.0041	0.0028754	410.5318713118178	22.598	0.30406	22.598	22.419	22.723	0	-0.10228	0.00029527	NaN	2.7352	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1248700	+		53199	18081	38662	38970							-0.039249015195764514
TELWNGVPWS	10	Unmodified	_TELWNGVPWS_					0	0	0		ENST00000453732.1_1_1:1214563-1214707:+|nuORF	ENST00000453732.1_1_1:1214563-1214707:+|nuORF	ENST00000453732.1_1_1:1214563-1214707:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	396.6173400878906	3	396.860984	1187.56112	0.30154	0.00011967	-1.3615	-0.00054034	-1.06	-0.00042068	396.8606595741975	48.583	0.3537	48.583	48.325	48.679	0					9	6	2	0	0	0	0.92957	1	17099	17099		5.7834	1.6668	1	843370			53200	12101	38663	38971	51939	51939					-0.02515462390670109
TELYAHGPQG	10	Unmodified	_TELYAHGPQG_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN	REV__ENSG00000152818|ENST00000367545|UTRN	MSMS	A375_MHC_IP_R2	2	536.7109375	2	536.756538	1071.49852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.625	1	51.379	50.879	51.879	0.75406								0	0	0	0.15332	1	19039	19039		10.074	3.8681	1		+		53201	19819	38664	38972	51940	51940					-0.03436608458855517
TELYDDKIFT	10	Unmodified	_TELYDDKIFT_					0	0	0			REV__ENSG00000118473|ENST00000371037|SGIP1	REV__ENSG00000118473|ENST00000371037|SGIP1	MULTI-SECPEP	A375_MHC_IP_R2	2	415.9400939941406	3	415.539688	1243.59723	-0.65793	-0.00027339	1.1873	0.00049337	0.52938	0.00021998	415.54027301747925	36.979	0.76188	37.75	37.308	38.07	0.7709					25	14	3	0	0	0	0.89369	1	13505	13505		12.228	1.3286	1	3930100	+		53202	18040	38665	38973	51941	51941					-0.014820500044834262
TELYEALAKE	10	Unmodified	_TELYEALAKE_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11;REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	A375_MHC_IP_R2	2	584.6802978515625	2	583.800611	1165.58667	-0.64299	-0.00037538	-0.55109	-0.00032172	-1.1941	-0.0006971	583.8001812248489	37.705	0.71984	38.479	38.175	38.895	0.77451					34	13	4	0	0	0	0.67512	1	13735	13735		15.248	2.206	1	11155000	+		53203	22046;17416	38666	38974	51942	51942					0.010499673410777177
TELYRLARK	9	Unmodified	_TELYRLARK_					0	0	0			REV__ENSG00000166266|ENST00000393094|CUL5	REV__ENSG00000166266|ENST00000393094|CUL5	MULTI-MSMS	A375_MHC_IP_R2	2	384.26434326171875	3	383.89614	1148.66659	-0.37459	-0.0001438	0.33069	0.00012695	-0.043901	-1.6853E-05	383.89633340633634	33.264	1.7264	34.016	33.127	34.853	0.75225					96	33	6	0	0	0	0.6343	1	12196	12196		12.873	4.7171	1	249350000	+		53204	20664	38667	38975	51943	51943					0.09820498525596122
TELYYARVT	9	Unmodified	_TELYYARVT_					0	0	0		ENSG00000142677|ENST00000270800|IL22RA1	ENSG00000142677|ENST00000270800|IL22RA1	ENSG00000142677|ENST00000270800|IL22RA1	MULTI-SECPEP	A375_MHC_IP_R2	2	372.9291076660156	3	372.529235	1114.56587	0.19814	7.3815E-05	-0.060381	-2.2494E-05	0.13776	5.1321E-05	372.5291944314034	30.033	0.50803	30.739	30.442	30.95	0.70602					17	9	3	0	0	0	0.77948	1	10557	10557		6.6304	2.1015	1	3204400			53205	5327	38668	38976	51944	51944					0.01317421752082737
TEMDSHEEKVF	11	Unmodified	_TEMDSHEEKVF_					0	0	0		ENSG00000095139|ENST00000264028|ARCN1;ARCN1|p.G229Efs*7|1|0.26|ENSG00000095139|chr11:118584509-118584509|T/-|frameshift_variant;nc|ENSG00000095139|P48444-2|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	MULTI-SECPEP	A375_MHC_IP_R1	1	451.6950988769531	3	451.199337	1350.57618	-0.31112	-0.00014038	0.56737	0.000256	0.25625	0.00011562	451.1994321957301	32.964	0.30311	32.964	32.836	33.14	0					8	5	2	0	0	0	0.99681	1	10714	10714		4.4062	1.7749	1	1113700			53206	2036	38669	38977	51945	51945					-0.08508383375669837
TEMDSHEEKVF	11	Unmodified	_TEMDSHEEKVF_					0	0	0		ENSG00000095139|ENST00000264028|ARCN1;ARCN1|p.G229Efs*7|1|0.26|ENSG00000095139|chr11:118584509-118584509|T/-|frameshift_variant;nc|ENSG00000095139|P48444-2|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	MULTI-MATCH	A375_MHC_IP_R2	2		3	451.199337	1350.57618	-0.30751	-0.00013875	0.40463	0.00018257	0.097113	4.3817E-05	451.1994677483134	32.35	0.30493	33.087	32.857	33.162	0.73692	0.061349	-0.00010195	NaN	4.4062	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1360400			53207	2036	38669	38977							-0.08508383375669837
TEMFVRDLD	9	Unmodified	_TEMFVRDLD_					0	0	0			REV__ENST00000338086.9_1_2:20512115-20518378:-|nuORF	REV__ENST00000338086.9_1_2:20512115-20518378:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	563.7001953125	2	563.265881	1124.51721	-0.42479	-0.00023927	-0.73098	-0.00041174	-1.1558	-0.00065101	563.2654316038007	55.388	0.35614	55.388	55.228	55.584	0					9	6	2	0	0	0	0.6656	1	19762	19762		10.074	0.52995	1	1345400	+		53208	23697	38670	38978	51946	51946					-0.04006814879312515
TEMKGRYHV	9	Unmodified	_TEMKGRYHV_					0	0	0			REV__ENSG00000137225|ENST00000398776|CAPN11	REV__ENSG00000137225|ENST00000398776|CAPN11	MULTI-SECPEP	A375_MHC_IP_R1	1	374.92083740234375	3	374.190447	1119.54951	0.39141	0.00014646	2.042	0.00076408	2.4334	0.00091054	374.19011094944113	23.1	0.25163	23.1	22.924	23.176	0					6	4	2	0	0	0	0.71541	1	6215	6215		0.86438	0	1	596420	+		53209	18995	38671	38979	51947	51947					-0.00547982685657189
TEMKQGAPTSF	11	Oxidation (M)	_TEM(Oxidation (M))KQGAPTSF_		TEM(1)KQGAPTSF		TEM(160)KQGAPTSF	0	0	1		nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENST00000594207.1_1_19:41774132-41786840:+|nuORF	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	MULTI-SECPEP	A375_MHC_IP_R1	1	607.1812744140625	2	606.781896	1211.54924	-0.44332	-0.000269	-0.0073912	-4.4849E-06	-0.45071	-0.00027348	606.7818617740439	27.356	1.1096	27.356	27.179	28.288	0					39	21	2	0	0	0	0.0007775	1	8273	8273		160.97	115.23	1	10042000			53210	2589	38672	38980	51948	51948		117			-0.048074471961854215
TEMKQGAPTSF	11	Oxidation (M)	_TEM(Oxidation (M))KQGAPTSF_		TEM(1)KQGAPTSF		TEM(130)KQGAPTSF	0	0	1		nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENST00000594207.1_1_19:41774132-41786840:+|nuORF	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	MULTI-SECPEP	A375_MHC_IP_R2	2	607.1815185546875	2	606.781896	1211.54924	-0.56849	-0.00034495	0.22289	0.00013524	-0.3456	-0.00020971	606.7820260667946	26.78	1.1208	27.44	27.262	28.383	0.65992					39	21	2	0	0	0	0.00082425	1	9088	9088		129.39	85.616	1	9469300			53211	2589	38672	38980	51949	51949		117			-0.048074471961854215
TEMKQGAPTSF	11	Unmodified	_TEMKQGAPTSF_					0	0	0		nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENST00000594207.1_1_19:41774132-41786840:+|nuORF	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	MULTI-MSMS	A375_MHC_IP_R2	2	599.1840209960938	2	598.784438	1195.55432	-0.72482	-0.00043401	-0.052727	-3.1572E-05	-0.77755	-0.00046558	598.7844793563452	34.589	0.40467	35.352	35.171	35.576	0.76338					19	7	4	0	0	0	4.9418E-08	1	12500	12500		157.24	103.84	1	6020400			53212	2589	38672	38981	51950	51950					-0.03563143333553853
TEMLDIYEL	9	Unmodified	_TEMLDIYEL_					0	0	0			REV__ENSG00000094631|ENST00000334136|HDAC6	REV__ENSG00000094631|ENST00000334136|HDAC6	MULTI-SECPEP	A375_MHC_IP_R2	2	376.93890380859375	3	376.182736	1125.52638	-0.20124	-7.5703E-05	-1.3316	-0.00050093	-1.5329	-0.00057664	376.1822475364208	25.611	0.71074	26.27	25.992	26.703	0.65992					23	13	2	0	0	0	0.73008	1	8719	8719		12.241	4.0851	1	3791900	+		53213	16984	38673	38982	51951	51951					-0.03136466313640085
TEMLIGHNRV	10	Unmodified	_TEMLIGHNRV_					0	0	0			REV__ENSG00000183060|ENST00000684762|LYSMD4	REV__ENSG00000183060|ENST00000684762|LYSMD4	MULTI-SECPEP	A375_MHC_IP_R1	1	390.9413146972656	3	390.541369	1168.60228	-0.22231	-8.6823E-05	0.33851	0.0001322	0.11619	4.5378E-05	390.54147283874863	29.167	0.60808	29.167	28.845	29.453	0					21	11	3	0	0	0	0.87163	1	9091	9091		5.4027	0	1	3585000	+		53214	21731	38674	38983	51952	51952					0.024719753771250907
TEMLPSILNQL	11	Oxidation (M)	_TEM(Oxidation (M))LPSILNQL_		TEM(1)LPSILNQL		TEM(100)LPSILNQL	0	0	1		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-SECPEP	A375_MHC_IP_R2	2	638.2373046875	2	637.836671	1273.65879	-0.72773	-0.00046417	0.88482	0.00056437	0.15709	0.0001002	637.8372117405627	126.41	0.35255	126.71	126.43	126.78	0.2951					11	6	2	0	0	0	0.023156	1	49481	49481		103.42	59.647	1	7546300			53215	5578	38675	38984	51953	51953		296			0.032905584231457397
TEMLTELKY	9	Unmodified	_TEMLTELKY_					0	0	0			REV__nc|ENSG00000113161|P04035-2|HMGCR	REV__nc|ENSG00000113161|P04035-2|HMGCR	MULTI-SECPEP	A375_MHC_IP_R2	2	376.2763671875	3	376.526614	1126.55801	-0.09158	-3.4482E-05	-2.3944	-0.00090157	-2.486	-0.00093605	376.52415535648765	19.763	0.7083	20.373	19.993	20.701	0.61029					27	13	4	0	0	0	0.75466	1	6151	6151		0.96228	0.56156	1	552830	+		53216	17768	38676	38985	51954	51954					-0.00020473559698075405
TEMPRQPKKF	10	Unmodified	_TEMPRQPKKF_					0	0	0		nc|ENSG00000163814|Q9H5V8-2|CDCP1;ENSG00000163814|ENST00000296129|CDCP1	nc|ENSG00000163814|Q9H5V8-2|CDCP1	nc|ENSG00000163814|Q9H5V8-2|CDCP1	MULTI-SECPEP	A375_MHC_IP_R1	1	421.9750671386719	3	421.228902	1260.66488	0.058167	2.4502E-05	1.2223	0.00051488	1.2805	0.00053938	421.22920321676816	20.155	0.50731	20.155	19.776	20.283	0					14	9	2	0	0	0	0.92832	1	5139	5139		8.4443	1.8209	1	1746900			53217	6727	38677	38986	51955	51955					0.044971214453426
TEMQYCNL	8	Unmodified	_TEMQYCNL_					0	0	0			REV__JAK2|p.E577Sfs*8|1|0.71|ENSG00000096968|chr9:5072578-5072579|AG/-|frameshift_variant	REV__JAK2|p.E577Sfs*8|1|0.71|ENSG00000096968|chr9:5072578-5072579|AG/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	501.1780700683594	2	501.206978	1000.3994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.551	1	83.551	83.051	84.051	0								0	0	0	0.16876	1	30574	30574		20.871	6.2895	1		+		53218	17009	38678	38987	51956	51956					-0.10078090739625623
TENAFPPIEV	10	Unmodified	_TENAFPPIEV_					0	0	0		ENST00000557684.5_1_12:25267803-25348012:-|nuORF;nc|ENSG00000118307|Q6TDU7-4|DNAI7;nc|ENSG00000118307|Q6TDU7-2|DNAI7;nc|ENSG00000118307|Q6TDU7-3|DNAI7;nc|ENSG00000118307|Q6TDU7|DNAI7;ENSG00000118307|ENST00000395987|DNAI7	ENST00000557684.5_1_12:25267803-25348012:-|nuORF	ENST00000557684.5_1_12:25267803-25348012:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	373.6009521484375	3	372.85724	1115.54989	0.042465	1.5834E-05	0.85902	0.00032029	0.90149	0.00033613	372.85751122556854	28.477	0.4567	29.156	28.757	29.214	0.67857					13	8	2	0	0	0	0.91556	1	9700	9700		5.7834	0.88642	1	1619700			53219	3535	38679	38988	51957	51957					-0.0032628448479954386
TENCFWIKV	9	Unmodified	_TENCFWIKV_					0	0	0		nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3	nc|ENSG00000139734|Q9NSV4-2|DIAPH3	nc|ENSG00000139734|Q9NSV4-2|DIAPH3	MULTI-SECPEP	A375_MHC_IP_R2	2	379.9447937011719	3	380.523315	1138.54812	-0.33935	-0.00012913	0.089081	3.3897E-05	-0.25027	-9.5232E-05	380.5233591939808	59.981	0.45502	60.728	60.4	60.855	0.74714					11	8	2	0	0	0	0.77834	1	22713	22713		1.0715	0	1	1243400			53220	5107	38680	38989	51958	51958					-0.015616167744155973
TENDDSDEY	9	Unmodified	_TENDDSDEY_					0	0	0		nc|ENSG00000156313|Q92834-4|RPGR;nc|ENSG00000156313|Q92834-2|RPGR;nc|ENSG00000156313|Q92834|RPGR;nc|ENSG00000156313|Q92834-3|RPGR;ENSG00000156313|ENST00000645032|RPGR	nc|ENSG00000156313|Q92834-4|RPGR	nc|ENSG00000156313|Q92834-4|RPGR	MSMS	A375_MHC_IP_R2	2	544.1765747070312	2	544.188548	1086.36254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.609	1	67.346	66.846	67.846	0.73631								0	0	0	0.15486	1	25236	25236		4.756	1.8668	1				53221	14697	38681	38990	51959	51959					-0.177183925508416
TENDIANFF	9	Unmodified	_TENDIANFF_					0	0	0		nc|ENSG00000096746|P31942-6|HNRNPH3;ENST00000478698.1_1_10:70098871-70101119:+|nuORF;nc|ENSG00000096746|P31942-5|HNRNPH3;ENST00000490442.5_1_10:70098233-70101119:+|nuORF;nc|ENSG00000096746|P31942-4|HNRNPH3;ENST00000469172.5_1_10:70098233-70101808:+|nuORF;nc|ENSG00000096746|P31942-3|HNRNPH3;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3	nc|ENSG00000096746|P31942-6|HNRNPH3	nc|ENSG00000096746|P31942-6|HNRNPH3	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1443481445312	2	535.743096	1069.47164	-0.4265	-0.00022849	0.25385	0.000136	-0.17264	-9.2493E-05	535.7429792656387	116.77	0.66154	116.77	116.4	117.06	0					18	12	2	0	0	0	0.01128	1	42831	42831		126.57	88.415	1	5665900			53222	2062	38682	38991	51960	51960					-0.060317170700500355
TENDIANFF	9	Unmodified	_TENDIANFF_					0	0	0		nc|ENSG00000096746|P31942-6|HNRNPH3;ENST00000478698.1_1_10:70098871-70101119:+|nuORF;nc|ENSG00000096746|P31942-5|HNRNPH3;ENST00000490442.5_1_10:70098233-70101119:+|nuORF;nc|ENSG00000096746|P31942-4|HNRNPH3;ENST00000469172.5_1_10:70098233-70101808:+|nuORF;nc|ENSG00000096746|P31942-3|HNRNPH3;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3	nc|ENSG00000096746|P31942-6|HNRNPH3	nc|ENSG00000096746|P31942-6|HNRNPH3	MULTI-SECPEP	A375_MHC_IP_R2	2	536.1416625976562	2	535.743096	1069.47164	-0.66855	-0.00035817	-1.0374	-0.00055576	-1.7059	-0.00091393	535.7425299021608	116	0.55959	116.69	116.34	116.9	0.68999					16	10	2	0	0	0	0.01128	1	43738	43738		114.65	78.605	1	7319600			53223	2062	38682	38991	51961	51961					-0.060317170700500355
TENDIRVMF	9	Unmodified	_TENDIRVMF_					0	0	0		ENST00000422993.2_1_11:47504376-47508350:-|nuORF;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1	ENST00000422993.2_1_11:47504376-47508350:-|nuORF	ENST00000422993.2_1_11:47504376-47508350:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	563.173828125	2	562.773874	1123.53319	-0.44708	-0.00025161	-0.25653	-0.00014437	-0.70361	-0.00039598	562.7738924028471	77.412	2.1854	77.412	76.319	78.505	0					97	42	5	0	0	0	0.010947	1	28183	28183		179.17	135.32	1	71459000			53224	5787	38683	38992	51962	51962					-0.02363108642384759
TENDIRVMF	9	Oxidation (M)	_TENDIRVM(Oxidation (M))F_		TENDIRVM(1)F		TENDIRVM(69)F	0	0	1		ENST00000422993.2_1_11:47504376-47508350:-|nuORF;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1	ENST00000422993.2_1_11:47504376-47508350:-|nuORF	ENST00000422993.2_1_11:47504376-47508350:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	571.17041015625	2	570.771331	1139.52811	-0.28653	-0.00016354	-0.098341	-5.613E-05	-0.38487	-0.00021967	570.7712605882566	77.411	1.0679	77.411	77.133	78.201	0					38	20	3	0	0	0	0.09145	1	28206	28206		69.338	41.709	1	9237100			53225	5787	38683	38993	51963	51963		311			-0.036074125050163275
TENDIRVMF	9	Oxidation (M)	_TENDIRVM(Oxidation (M))F_		TENDIRVM(1)F		TENDIRVM(190)F	0	0	1		ENST00000422993.2_1_11:47504376-47508350:-|nuORF;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1	ENST00000422993.2_1_11:47504376-47508350:-|nuORF	ENST00000422993.2_1_11:47504376-47508350:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	571.1702880859375	2	570.771331	1139.52811	-0.59386	-0.00033896	-0.30919	-0.00017648	-0.90305	-0.00051543	570.7712675040308	60.538	1.319	61.283	60.903	62.223	0.74503					55	25	5	0	0	0	9.464E-05	1	22843	22843		193.29	139.46	1	86358000			53226	5787	38683	38993	51964	51964		311			-0.036074125050163275
TENDIRVMF	9	Oxidation (M)	_TENDIRVM(Oxidation (M))F_		TENDIRVM(1)F		TENDIRVM(65)F	0	0	1		ENST00000422993.2_1_11:47504376-47508350:-|nuORF;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1	ENST00000422993.2_1_11:47504376-47508350:-|nuORF	ENST00000422993.2_1_11:47504376-47508350:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	570.6538696289062	2	570.771331	1139.52811	-0.29649	-0.00016923	-0.49119	-0.00028036	-0.78768	-0.00044959	570.7708070882769	76.662	0.86061	77.402	77.095	77.956	0.74052					41	16	3	0	0	0	0.10495	1	29137	29137		65.474	34.837	1	6269900			53227	5787	38683	38993	51965	51965		311			-0.036074125050163275
TENDIYNFF	9	Unmodified	_TENDIYNFF_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	A375_MHC_IP_R1	1	582.1575317382812	2	581.756204	1161.49785	-0.12292	-7.1507E-05	-0.51914	-0.00030202	-0.64206	-0.00037352	581.7558798059484	125.78	0.70248	125.78	125.55	126.25	0					35	13	4	0	0	0	0.0028027	1	47910	47910		139.14	87.509	1	177800000			53228	7374;7439	38684	38994	51966	51966					-0.07643447898567501
TENDIYNFF	9	Unmodified	_TENDIYNFF_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	A375_MHC_IP_R2	2	582.1561279296875	2	581.756204	1161.49785	-0.31533	-0.00018345	-0.43804	-0.00025483	-0.75337	-0.00043828	582.257528569548	125.3	0.80578	125.6	125.42	126.23	0.2951					30	15	3	0	0	0	0.0011619	2	48808	48808;49142		152.41	108.64	1	180110000			53229	7374;7439	38684	38994	51967;51968	51967					-0.07643447898567501
TENDKEYQEY	10	Unmodified	_TENDKEYQEY_					0	0	0		ENSG00000235272|ENST00000444122|RAMACL;ENSG00000169612|ENST00000304191|RAMAC	ENSG00000235272|ENST00000444122|RAMACL	ENSG00000235272|ENST00000444122|RAMACL	MULTI-MSMS	A375_MHC_IP_R1	1	660.1748046875	2	659.775322	1317.53609	-0.53015	-0.00034978	0.086211	5.688E-05	-0.44394	-0.0002929	659.7753606169398	24.878	0.40649	24.878	24.698	25.104	0					11	7	2	0	0	0	3.2977E-05	1	7171	7171		169.92	134.99	1	6474500			53230	7423	38685	38995	51969	51969					-0.10997606774571977
TENDKEYQEY	10	Unmodified	_TENDKEYQEY_					0	0	0		ENSG00000235272|ENST00000444122|RAMACL;ENSG00000169612|ENST00000304191|RAMAC	ENSG00000235272|ENST00000444122|RAMACL	ENSG00000235272|ENST00000444122|RAMACL	MULTI-MATCH	A375_MHC_IP_R2	2		2	659.775322	1317.53609	-1.2227	-0.00080668	0.17895	0.00011806	-1.0437	-0.00068862	660.2768656275318	24.391	0.35646	25.035	24.958	25.314	0.64368	0.078502	7.8427E-05	NaN	169.92	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8963300			53231	7423	38685	38995							-0.10997606774571977
TENDYWAML	9	Unmodified	_TENDYWAML_					0	0	0		WWOX|p.K284E|1|0.15|ENSG00000186153|chr16:78432546-78432546|A/G|missense_variant	WWOX|p.K284E|1|0.15|ENSG00000186153|chr16:78432546-78432546|A/G|missense_variant	WWOX|p.K284E|1|0.15|ENSG00000186153|chr16:78432546-78432546|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	571.1702880859375	2	571.744782	1141.47501	-0.59548	-0.00034046	-3.6373	-0.0020796	-4.2328	-0.0024201	571.7435691225996	60.286	0.30745	61.031	60.853	61.16	0.74503					7	5	2	0	0	0	0.58271	1	22843	22843		26.884	0.61551	1	1786200			53232	30168	38686	38996	51970	51970					-0.090067902877081
TENEEEEEGM	10	Unmodified	_TENEEEEEGM_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MSMS	A375_MHC_IP_R2	2	598.6788940429688	2	598.716615	1195.41868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.741	1	90.473	89.973	90.973	0.7318								0	0	0	0.15451	1	34147	34147		6.2058	0.9089	1		+		53233	20275	38687	38997	51971	51971					-0.17121507705678596
TENENFNQI	9	Unmodified	_TENENFNQI_					0	0	0		GPR158|p.L1134F|1|0.23|ENSG00000151025|chr10:25599026-25599026|C/T|missense_variant	GPR158|p.L1134F|1|0.23|ENSG00000151025|chr10:25599026-25599026|C/T|missense_variant	GPR158|p.L1134F|1|0.23|ENSG00000151025|chr10:25599026-25599026|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	554.6873168945312	2	554.74891	1107.48327	-0.40801	-0.00022634	-0.61355	-0.00034036	-1.0216	-0.0005667	554.7485180352476	70.345	0.66397	70.345	70.034	70.698	0					20	12	2	0	0	0	0.4867	1	25534	25534		20.454	2.3073	1	2539700			53234	14065	38688	38998	51972	51972					-0.06617520046711434
TENFHSYVP	9	Unmodified	_TENFHSYVP_					0	0	0			REV__nc|ENSG00000103222|P33527-8|ABCC1	REV__nc|ENSG00000103222|P33527-8|ABCC1	MSMS	A375_MHC_IP_R2	2	547.1685180664062	2	547.251089	1092.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.747	1	59.495	58.995	59.995	0.74714								0	0	0	0.15283	1	22228	22228		16.942	0.79319	1		+		53235	17259	38689	38999	51973	51973					-0.054920108331543815
TENFREPIL	9	Unmodified	_TENFREPIL_					0	0	0			REV__nc|ENSG00000087157|Q32NB8-3|PGS1	REV__nc|ENSG00000087157|Q32NB8-3|PGS1	MULTI-SECPEP	A375_MHC_IP_R1	1	560.1952514648438	2	559.795663	1117.57677	-0.63246	-0.00035405	0.045864	2.5674E-05	-0.5866	-0.00032837	559.7957333913236	65.796	1.3228	65.796	65.105	66.428	0					50	25	4	0	0	0	0.23313	1	23796	23796		62.573	0	1	9471600	+		53236	16866	38690	39000	51974	51974					0.022688241263722375
TENFREPIL	9	Unmodified	_TENFREPIL_					0	0	0			REV__nc|ENSG00000087157|Q32NB8-3|PGS1	REV__nc|ENSG00000087157|Q32NB8-3|PGS1	MULTI-SECPEP	A375_MHC_IP_R2	2	560.195068359375	2	559.795663	1117.57677	-0.68704	-0.0003846	-0.14182	-7.9392E-05	-0.82886	-0.00046399	559.7955592387924	64.901	0.81266	65.639	65.308	66.121	0.73811					37	15	4	0	0	0	0.16237	1	24587	24587		60.074	0	1	9654000	+		53237	16866	38690	39000	51975	51975					0.022688241263722375
TENFRHLVRQW	11	Unmodified	_TENFRHLVRQW_					0	0	0			REV__ENST00000256689.9_1_12:46752001-46752085:-|nuORF	REV__ENST00000256689.9_1_12:46752001-46752085:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	495.5881652832031	3	495.928503	1484.76368	-0.25371	-0.00012582	-2.7009	-0.0013395	-2.9546	-0.0014653	496.261016555315	82.072	0.15199	82.072	81.961	82.113	0					4	2	2	0	0	0	1.0005	1	30003	30003		1.1098	0.6038	1	388090	+		53238	23153	38691	39001	51976	51976					0.04068860734628288
TENFTKGMAY	10	Unmodified	_TENFTKGMAY_					0	0	0			REV__AMIGO1|p.E346K|1|0.65|ENSG00000181754|chr1:109507877-109507877|C/T|missense_variant	REV__AMIGO1|p.E346K|1|0.65|ENSG00000181754|chr1:109507877-109507877|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	581.6646118164062	2	581.265881	1160.51721	-0.35708	-0.00020756	-0.65592	-0.00038126	-1.013	-0.00058882	581.2654668317946	30.824	1.2706	31.542	31.266	32.536	0.71857					42	24	2	0	0	0	0.37864	1	10953	10953		53.833	9.9745	1	8438700	+		53239	15389	38692	39002	51977	51977					-0.05662814879292455
TENHLIRKI	9	Unmodified	_TENHLIRKI_					0	0	0		ENSG00000196865|ENST00000369301|NHLRC2	ENSG00000196865|ENST00000369301|NHLRC2	ENSG00000196865|ENST00000369301|NHLRC2	MULTI-MSMS	A375_MHC_IP_R1	1	375.6242370605469	3	375.224257	1122.65094	0.029118	1.0926E-05	-0.21913	-8.2224E-05	-0.19001	-7.1298E-05	375.2242209215017	23.583	0.25504	23.583	23.432	23.687	0					10	4	3	0	0	0	0.64136	1	6535	6535		12.241	4.0851	1	3839300			53240	9091	38693	39003	51978	51978					0.09452212008591232
TENIDIKKY	9	Unmodified	_TENIDIKKY_					0	0	0		nc|ENSG00000152904|O95749-2|GGPS1;ENSG00000152904|ENST00000282841|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	MULTI-MSMS	A375_MHC_IP_R1	1	375.6046142578125	3	375.20464	1122.59209	0.23728	8.9027E-05	0.37011	0.00013887	0.60739	0.00022789	375.2048449889603	28.82	0.96277	28.82	28.44	29.403	0					50	18	5	0	0	0	0.0090499	1	8904	8904		83.278	40.965	1	154330000			53241	5988	38694	39004	51979	51979					0.03569690923586677
TENIDIKKY	9	Unmodified	_TENIDIKKY_					0	0	0		nc|ENSG00000152904|O95749-2|GGPS1;ENSG00000152904|ENST00000282841|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	MULTI-SECPEP	A375_MHC_IP_R1	1	562.7029418945312	2	562.303321	1122.59209	-0.53889	-0.00030302	0.45231	0.00025433	-0.086577	-4.8682E-05	562.3035606682628	28.819	0.65989	28.819	28.541	29.201	0					42	12	5	0	0	0	1.6581E-20	1	8922	8922		250.47	123.9	1	47238000			53242	5988	38694	39004	51980	51980					0.03569690923586677
TENIDIKKY	9	Unmodified	_TENIDIKKY_					0	0	0		nc|ENSG00000152904|O95749-2|GGPS1;ENSG00000152904|ENST00000282841|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	MULTI-MSMS	A375_MHC_IP_R2	2	375.6045837402344	3	375.20464	1122.59209	0.063243	2.3729E-05	0.25333	9.505E-05	0.31657	0.00011878	375.20480768803003	28.154	0.96186	28.833	28.351	29.313	0.67857					48	18	5	0	0	0	0.0042961	1	9659	9659		115.06	63.644	1	169380000			53243	5988	38694	39004	51981	51981					0.03569690923586677
TENIDIKKY	9	Unmodified	_TENIDIKKY_					0	0	0		nc|ENSG00000152904|O95749-2|GGPS1;ENSG00000152904|ENST00000282841|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	MULTI-SECPEP	A375_MHC_IP_R2	2	562.7028198242188	2	562.303321	1122.59209	-0.79497	-0.00044701	0.31716	0.00017834	-0.47781	-0.00026868	562.3034443340866	28.154	0.50751	28.833	28.604	29.112	0.67857					31	9	4	0	0	0	0.0078253	1	9674	9674		168.54	72.427	1	50140000			53244	5988	38694	39004	51982	51982					0.03569690923586677
TENIKSISCV	10	Unmodified	_TENIKSISCV_					0	0	0			REV__nc|ENSG00000152229|Q9H939-2|PSTPIP2	REV__nc|ENSG00000152229|Q9H939-2|PSTPIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	547.683349609375	2	547.281531	1092.54851	-0.42023	-0.00022999	0.70454	0.00038558	0.28431	0.0001556	547.2819791850613	45.985	0.81153	45.985	45.484	46.295	0					21	15	3	0	0	0	0.83355	1	16159	16159		17.113	2.2746	1	2405800	+		53245	27291	38695	39005	51983	51983					0.005937581547868831
TENKFFISI	9	Unmodified	_TENKFFISI_					0	0	0		ENSG00000132824|ENST00000342374|SERINC3;nc|ENSG00000132824|Q13530-2|SERINC3	ENSG00000132824|ENST00000342374|SERINC3	ENSG00000132824|ENST00000342374|SERINC3	MULTI-SECPEP	A375_MHC_IP_R1	1	550.1953735351562	2	549.795132	1097.57571	-0.53259	-0.00029282	0.37067	0.00020379	-0.16192	-8.9025E-05	549.7953168486241	96.197	0.86313	96.197	95.817	96.68	0					29	16	2	0	0	0	0.20059	1	35302	35302		59.368	15.387	1	16649000			53246	4454	38696	39006	51984	51984					0.030826097574845335
TENKFFISI	9	Unmodified	_TENKFFISI_					0	0	0		ENSG00000132824|ENST00000342374|SERINC3;nc|ENSG00000132824|Q13530-2|SERINC3	ENSG00000132824|ENST00000342374|SERINC3	ENSG00000132824|ENST00000342374|SERINC3	MULTI-SECPEP	A375_MHC_IP_R2	2	550.195556640625	2	549.795132	1097.57571	-0.56513	-0.0003107	0.070946	3.9006E-05	-0.49418	-0.0002717	549.7951123405901	95.234	0.86681	95.984	95.633	96.5	0.75044					29	16	2	0	0	0	0.14606	1	36155	36155		63.961	5.2817	1	13907000			53247	4454	38696	39006	51985	51985					0.030826097574845335
TENKKLEIY	9	Unmodified	_TENKKLEIY_					0	0	0			REV__tr|U7SUE8|U7SUE8_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01129PE=4SV=1	REV__tr|U7SUE8|U7SUE8_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01129PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	380.2680358886719	3	379.876523	1136.60774	-0.20559	-7.81E-05	0.50932	0.00019348	0.30373	0.00011538	379.87665126273436	23.984	0.40845	24.614	24.283	24.691	0.63014					22	7	4	0	0	0	0.50892	1	7691	7691		19.362	7.1872	1	28819000	+		53248	28551	38697	39007	51986	51986					0.04489977440630355
TENKNVEF	8	Unmodified	_TENKNVEF_					0	0	0		ENSG00000196074|ENST00000357552|SYCP2	ENSG00000196074|ENST00000357552|SYCP2	ENSG00000196074|ENST00000357552|SYCP2	MSMS	A375_MHC_IP_R1	1	490.66400146484375	2	490.737814	979.461075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.689	1	47.689	47.189	48.189	0								0	0	0	0.16876	1	16785	16785		20.871	0	1				53249	8989	38698	39008	51987	51987					-0.029476997244614722
TENKSSRSKAE	11	Unmodified	_TENKSSRSKAE_					0	0	0			REV__ENSG00000176871|ENST00000315436|WSB2	REV__ENSG00000176871|ENST00000315436|WSB2	MULTI-MSMS	A375_MHC_IP_R1	1	413.6268615722656	3	412.877474	1235.61059	0.2531	0.0001045	2.4264	0.0010018	2.6795	0.0011063	412.87840956317	31.812	0.61457	31.812	31.565	32.179	0					19	11	3	0	0	0	0.65093	1	10192	10192		11.631	0	1	1923000	+		53250	21422	38699	39009	51988	51988					0.002212008274909749
TENLATTKLM	10	Unmodified	_TENLATTKLM_					0	0	0		ENST00000373095.5_1_9:130703347-130703578:-|nuORF	ENST00000373095.5_1_9:130703347-130703578:-|nuORF	ENST00000373095.5_1_9:130703347-130703578:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	374.600830078125	3	374.53388	1120.57981	0.098282	3.681E-05	-0.46923	-0.00017574	-0.37095	-0.00013893	374.53389485751535	25.741	1.0135	25.741	25.511	26.524	0					57	19	5	0	0	0	0.69306	1	7707	7707		8.4443	1.4072	1	42674000			53251	11221	38700	39010	51989	51989					0.02434331188874239
TENLYKVHL	9	Unmodified	_TENLYKVHL_					0	0	0			REV__ENST00000441282.1_1_13:65532685-65533108:-|nuORF	REV__ENST00000441282.1_1_13:65532685-65533108:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	558.1921997070312	2	558.806031	1115.59751	-0.76992	-0.00043024	0.65969	0.00036864	-0.11023	-6.1595E-05	558.8065260642406	41.627	0.9157	42.402	41.997	42.913	0.77451					24	17	2	0	0	0	0.72623	1	15324	15324		25.399	25.399	1	1418900	+		53252	24806	38701	39011	51990	51990					0.04433414506047484
TENPGSIRI	9	Unmodified	_TENPGSIRI_					0	0	0		nc|ENSG00000143367|Q9NNX1-3|TUFT1;nc|ENSG00000143367|Q9NNX1-2|TUFT1;ENSG00000143367|ENST00000368849|TUFT1	nc|ENSG00000143367|Q9NNX1-3|TUFT1	nc|ENSG00000143367|Q9NNX1-3|TUFT1	MULTI-MSMS	A375_MHC_IP_R2	2	494.1661071777344	2	493.766906	985.519259	-0.45746	-0.00022588	-0.42292	-0.00020882	-0.88038	-0.0004347	493.7664025213165	41.959	0.56281	42.734	42.504	43.067	0.77451					15	10	2	0	0	0	0.39434	1	15583	15583		24.991	0.97039	1	5031000			53253	5374	38702	39012	51991	51991					0.025919819208070294
TENPVIMGL	9	Oxidation (M)	_TENPVIM(Oxidation (M))GL_		TENPVIM(1)GL		TENPVIM(140)GL	0	0	1		ENSG00000110367|ENST00000534980|DDX6;ENST00000533239.1_1_11:118656759-118656960:-|nuORF;ENST00000525082.1_1_11:118639020-118656960:-|nuORF	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	A375_MHC_IP_R1	1	495.6521301269531	2	495.252243	988.489932	-0.39285	-0.00019456	-0.13099	-6.4871E-05	-0.52383	-0.00025943	495.25220615392834	81.294	1.4196	81.294	80.948	82.368	0					65	27	4	0	0	0	0.0028027	2	29648	29648;29830		139.14	53.866	1	22644000			53254	2933	38703	39013	51992;51993	51992		139			-0.004772984196733887
TENPVIMGL	9	Oxidation (M)	_TENPVIM(Oxidation (M))GL_		TENPVIM(1)GL		TENPVIM(86)GL	0	0	1		ENSG00000110367|ENST00000534980|DDX6;ENST00000533239.1_1_11:118656759-118656960:-|nuORF;ENST00000525082.1_1_11:118639020-118656960:-|nuORF	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	A375_MHC_IP_R1	1	495.6522216796875	2	495.252243	988.489932	-0.57447	-0.00028451	-0.2841	-0.0001407	-0.85858	-0.00042521	495.2522386823604	84.53	2.9942	84.53	83.837	86.831	0					140	58	3	0	0	0	0.018261	3	30853	30823;30853;30900		85.642	38.671	1	4546800			53255	2933	38703	39013	51994;51995;51996	51995		139			-0.004772984196733887
TENPVIMGL	9	Oxidation (M)	_TENPVIM(Oxidation (M))GL_		TENPVIM(1)GL		TENPVIM(52)GL	0	0	1		ENSG00000110367|ENST00000534980|DDX6;ENST00000533239.1_1_11:118656759-118656960:-|nuORF;ENST00000525082.1_1_11:118639020-118656960:-|nuORF	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MSMS	A375_MHC_IP_R1	1	495.23486328125	2	495.252243	988.489932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.836	1	86.836	86.336	87.336	0								0	0	0	0.059505	1	31850	31850		51.63	24.746	1				53256	2933	38703	39013	51997	51997		139			-0.004772984196733887
TENPVIMGL	9	Oxidation (M)	_TENPVIM(Oxidation (M))GL_		TENPVIM(1)GL		TENPVIM(76)GL	0	0	1		ENSG00000110367|ENST00000534980|DDX6;ENST00000533239.1_1_11:118656759-118656960:-|nuORF;ENST00000525082.1_1_11:118639020-118656960:-|nuORF	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	A375_MHC_IP_R2	2	495.651611328125	2	495.252243	988.489932	-0.52009	-0.00025758	-0.26744	-0.00013245	-0.78753	-0.00039003	495.2521928935117	80.573	1.2702	81.318	80.91	82.18	0.74474					56	24	4	0	0	0	0.029064	1	30723	30723		75.761	39.634	1	21507000			53257	2933	38703	39013	51998	51998		139			-0.004772984196733887
TENPVIMGL	9	Oxidation (M)	_TENPVIM(Oxidation (M))GL_		TENPVIM(1)GL		TENPVIM(100)GL	0	0	1		ENSG00000110367|ENST00000534980|DDX6;ENST00000533239.1_1_11:118656759-118656960:-|nuORF;ENST00000525082.1_1_11:118639020-118656960:-|nuORF	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	A375_MHC_IP_R2	2	495.6523132324219	2	495.252243	988.489932	-0.37526	-0.00018585	-0.35087	-0.00017377	-0.72614	-0.00035962	495.25210624937625	84.1	3.2129	84.84	84.049	87.261	0.73962					95	62	2	0	0	0	0.0092471	4	32030	31901;32030;32247;32284		103.35	41.996	1	3882100			53258	2933	38703	39013	51999;52000;52001;52002	52000		139			-0.004772984196733887
TENPVIMGL	9	Oxidation (M)	_TENPVIM(Oxidation (M))GL_		TENPVIM(1)GL		TENPVIM(100)GL	0	0	1		ENSG00000110367|ENST00000534980|DDX6;ENST00000533239.1_1_11:118656759-118656960:-|nuORF;ENST00000525082.1_1_11:118639020-118656960:-|nuORF	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	A375_MHC_IP_R2	2	495.6519775390625	2	495.252243	988.489932	-0.46464	-0.00023011	-0.028946	-1.4335E-05	-0.49358	-0.00024445	495.2521137587172	102.95	0.81315	103.71	103.28	104.09	0.76428					29	15	3	0	0	0	0.0092471	1	38970	38970		103.35	41.996	1	1594000			53259	2933	38703	39013	52003	52003		139			-0.004772984196733887
TENPVIMGL	9	Unmodified	_TENPVIMGL_					0	0	0		ENSG00000110367|ENST00000534980|DDX6;ENST00000533239.1_1_11:118656759-118656960:-|nuORF;ENST00000525082.1_1_11:118639020-118656960:-|nuORF	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	A375_MHC_IP_R1	1	487.65460205078125	2	487.254785	972.495018	-0.2298	-0.00011197	-0.10713	-5.2201E-05	-0.33693	-0.00016417	487.2547067241128	103.75	0.96779	103.75	103.37	104.34	0					41	18	3	0	0	0	0.0019764	1	38039	38039		144.35	36.353	1	12898000			53260	2933	38703	39014	52004	52004					0.007670054429354423
TENPVIMGL	9	Unmodified	_TENPVIMGL_					0	0	0		ENSG00000110367|ENST00000534980|DDX6;ENST00000533239.1_1_11:118656759-118656960:-|nuORF;ENST00000525082.1_1_11:118639020-118656960:-|nuORF	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-SECPEP	A375_MHC_IP_R2	2	487.65460205078125	2	487.254785	972.495018	-0.57975	-0.00028249	-0.038102	-1.8565E-05	-0.61786	-0.00030105	487.2547268703554	102.89	1.0683	103.66	103.18	104.24	0.76428					44	20	3	0	0	0	0.0090265	1	38914	38914		144.35	51.528	1	15151000			53261	2933	38703	39014	52005	52005					0.007670054429354423
TENQSGVSF	9	Unmodified	_TENQSGVSF_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	A375_MHC_IP_R1	1	485.1192932128906	2	484.719621	967.42469	-0.15503	-7.5146E-05	-0.32095	-0.00015557	-0.47598	-0.00023072	484.71944159488436	45.939	0.8608	45.939	45.534	46.395	0					35	16	3	0	0	0	0.012843	1	16044	16044		92.653	41.798	1	7614100			53262	6659	38704	39015	52006	52006					-0.06032576621169028
TENQSGVSF	9	Unmodified	_TENQSGVSF_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	A375_MHC_IP_R2	2	485.1190185546875	2	484.719621	967.42469	-0.68009	-0.00032966	-0.14231	-6.8981E-05	-0.8224	-0.00039864	484.71948860055187	45.18	0.86233	45.945	45.59	46.453	0.76519					32	16	3	0	0	0	0.012843	1	16838	16838		92.653	32.264	1	7859100			53263	6659	38704	39015	52007	52007					-0.06032576621169028
TENREMLPF	9	Unmodified	_TENREMLPF_					0	0	0		ENSG00000164303|ENST00000296741|ENPP6	ENSG00000164303|ENST00000296741|ENPP6	ENSG00000164303|ENST00000296741|ENPP6	MULTI-SECPEP	A375_MHC_IP_R2	2	380.2641906738281	3	379.518341	1135.53319	-0.23185	-8.7992E-05	1.4884	0.00056487	1.2565	0.00047687	379.85356428033884	28.307	0.2532	28.985	28.757	29.01	0.67857					6	4	2	0	0	0	0.71541	1	9701	9701		7.609	2.3121	1	723720			53264	6817	38705	39016	52008	52008					-0.029151086424235473
TENRMIGADH	10	Unmodified	_TENRMIGADH_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-SECPEP	A375_MHC_IP_R1	1	571.697509765625	2	572.264204	1142.51386	-0.22459	-0.00012852	-0.026967	-1.5432E-05	-0.25155	-0.00014396	572.2639411832137	63.549	0.51164	63.549	63.326	63.837	0					18	9	2	0	0	0	0.90513	1	23071	23071		17.113	3.605	1	2770600	+		53265	21206	38706	39017	52009	52009					-0.05170064933304275
TENRTMSRIL	10	Unmodified	_TENRTMSRIL_					0	0	0		ENST00000477043.5_1_10:5727032-5751560:+|nuORF	ENST00000477043.5_1_10:5727032-5751560:+|nuORF	ENST00000477043.5_1_10:5727032-5751560:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	408.14276123046875	3	407.552045	1219.63431	-0.23797	-9.6986E-05	-1.5399	-0.0006276	-1.7779	-0.00072458	407.8864256571912	36.181	0.20301	36.181	36.033	36.236	0					5	3	2	0	0	0	0.93733	1	12078	12078		5.4027	1.5264	1	374060			53266	12437	38707	39018	52010	52010					0.033273430603230736
TENRWPEVQ	9	Unmodified	_TENRWPEVQ_					0	0	0			REV__nc|ENSG00000275395|Q9Y6R7|FCGBP	REV__nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-SECPEP	A375_MHC_IP_R2	2	580.18017578125	2	579.780544	1157.54654	-0.72433	-0.00041995	-0.00043893	-2.5448E-07	-0.72477	-0.00042021	579.7805138188835	25.54	0.40527	26.193	25.986	26.391	0.65362					23	7	4	0	0	0	0.76187	1	8557	8557		3.9444	0	1	6831700	+		53267	27543	38708	39019	52011	52011					-0.025935345388234055
TENTEENRRFY	11	Unmodified	_TENTEENRRFY_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;ENST00000564521.6_1_16:30075769-30079042:+|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	A375_MHC_IP_R1	1	487.2913818359375	3	486.891783	1457.65352	-0.44849	-0.00021837	-0.08663	-4.2179E-05	-0.53512	-0.00026055	486.8917162368008	24.165	1.0127	24.165	23.94	24.953	0					61	19	5	0	0	0	0.13072	4	6768	6768;6854;6873;7074		64.688	49.149	1	172480000			53268	5833	38709	39020	52012;52013;52014;52015	52012					-0.05700029115087091
TENTEENRRFY	11	Unmodified	_TENTEENRRFY_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;ENST00000564521.6_1_16:30075769-30079042:+|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	A375_MHC_IP_R1	1	730.2335205078125	2	729.834037	1457.65352	-0.74899	-0.00054664	-0.019966	-1.4572E-05	-0.76895	-0.00056121	729.8340328085345	24.147	0.70743	24.147	23.94	24.647	0					39	13	4	0	0	0	0.00015247	1	6780	6780		135.86	108.23	1	35470000			53269	5833	38709	39020	52016	52016					-0.05700029115087091
TENTEENRRFY	11	Unmodified	_TENTEENRRFY_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;ENST00000564521.6_1_16:30075769-30079042:+|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	A375_MHC_IP_R2	2	487.29119873046875	3	486.891783	1457.65352	-0.88575	-0.00043126	0.24421	0.00011891	-0.64153	-0.00031236	486.8919204900443	23.516	0.50618	24.147	23.928	24.435	0.63015					32	9	5	0	0	0	0.0012464	1	7559	7559		101.12	76.158	1	144140000			53270	5833	38709	39020	52017	52017					-0.05700029115087091
TENTEENRRFY	11	Unmodified	_TENTEENRRFY_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;ENST00000564521.6_1_16:30075769-30079042:+|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	A375_MHC_IP_R2	2	730.7344360351562	2	729.834037	1457.65352	-1.0978	-0.00080118	0.28151	0.00020545	-0.81625	-0.00059573	729.8342813085294	23.506	0.40466	24.136	23.928	24.333	0.63014					23	7	4	0	0	0	0.087337	1	7566	7566		87.258	58.764	1	33933000			53271	5833	38709	39020	52018	52018					-0.05700029115087091
TENTEENRRFY	11	Unmodified	_TENTEENRRFY_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;ENST00000564521.6_1_16:30075769-30079042:+|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	A375_MHC_IP_R2	2	487.29156494140625	3	486.891783	1457.65352	-0.84095	-0.00040945	0.28883	0.00014063	-0.55212	-0.00026882	486.8919025202164	23.984	0.66262	24.614	24.333	24.996	0.63014					34	12	4	0	0	0	0.18322	2	7831	7754;7831		55.839	40.3	1	68175000			53272	5833	38709	39020	52019;52020	52020					-0.05700029115087091
TENTEENRRFY	11	Unmodified	_TENTEENRRFY_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;ENST00000564521.6_1_16:30075769-30079042:+|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	A375_MHC_IP_R2	2	730.2337036132812	2	729.834037	1457.65352	-1.0513	-0.00076729	0.24155	0.00017629	-0.80977	-0.000591	729.834272547596	24.013	0.40866	24.651	24.341	24.749	0.63777					19	7	4	0	0	0	0.087811	1	7833	7833		85.764	64.227	1	12422000			53273	5833	38709	39020	52021	52021					-0.05700029115087091
TENTKFVLR	9	Unmodified	_TENTKFVLR_					0	0	0		nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-SECPEP	A375_MHC_IP_R1	1	553.6613159179688	2	554.31148	1106.60841	-0.70246	-0.00038938	-0.29788	-0.00016512	-1.0003	-0.0005545	554.3111599468385	28.192	0.25137	28.192	27.987	28.238	0					5	4	2	0	0	0	0.7911	1	8638	8638		7.2892	0	1	773160			53274	9061	38710	39021	52022	52022					0.059368168803075605
TENWEQKY	8	Unmodified	_TENWEQKY_					0	0	0		ENSG00000196549|ENST00000360490|MME;chr3:155024324-155084158|126|46.17|0.08|9.18|+|ENST00000492661|MME,MME	ENSG00000196549|ENST00000360490|MME	ENSG00000196549|ENST00000360490|MME	MULTI-SECPEP	A375_MHC_IP_R1	1	366.6009521484375	3	366.501456	1096.48254	0.10927	4.0048E-05	-0.32198	-0.00011801	-0.21271	-7.796E-05	366.5012729761255	27.153	0.55566	27.153	26.978	27.533	0					19	10	3	0	0	0	0.93416	1	8135	8135		10.824	5.527	1	3454300			53275	472	38711	39022	52023	52023					-0.06184314695747162
TENYYQQGL	9	Unmodified	_TENYYQQGL_					0	0	0			REV__ENSG00000213462|ENST00000394323|ERV3-1	REV__ENSG00000213462|ENST00000394323|ERV3-1	MULTI-MSMS	A375_MHC_IP_R2	2	558.6528930664062	2	558.253828	1114.4931	-1.0247	-0.00057204	-0.19101	-0.00010663	-1.2157	-0.00067867	558.2537068093467	71.796	0.50641	72.53	72.213	72.72	0.73421					21	9	3	0	0	0	0.32899	1	27200	27200		28.487	15.955	1	3480700	+		53276	22623	38712	39023	52024	52024					-0.05956332041341739
TEPAPRRHATC	11	Unmodified	_TEPAPRRHATC_					0	0	0			REV__nc|ENSG00000090539|Q9H2X0-5|CHRD	REV__nc|ENSG00000090539|Q9H2X0-5|CHRD	MULTI-SECPEP	A375_MHC_IP_R2	2	414.2911376953125	3	413.540139	1237.59859	-0.0072554	-3.0004E-06	-0.47558	-0.00019667	-0.48283	-0.00019967	413.5398926199171	31.573	0.86729	32.304	31.732	32.599	0.73134					25	16	3	0	0	0	0.86796	1	10976	10976		8.7518	0.30748	1	13874000	+		53277	16927	38713	39024	52025	52025					-0.010706943966852123
TEPCRFVIEM	10	Unmodified	_TEPCRFVIEM_					0	0	0			REV__nc|ENSG00000138642|Q8IVU3-2|HERC6	REV__nc|ENSG00000138642|Q8IVU3-2|HERC6	MULTI-SECPEP	A375_MHC_IP_R1	1	408.2840270996094	3	408.863232	1223.56787	-0.26268	-0.0001074	0.63264	0.00025866	0.36996	0.00015126	408.8633503969295	19.416	0.25282	19.416	19.268	19.521	0					8	4	3	0	0	0	0.92227	1	4783	4783		7.9454	6.4903	1	2006200	+		53278	19108	38714	39025	52026	52026					-0.03497608825955467
TEPDQWGAL	9	Unmodified	_TEPDQWGAL_					0	0	0			REV__ENST00000523382.5_1_5:179225178-179228384:-|nuORF	REV__ENST00000523382.5_1_5:179225178-179228384:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	509.2264099121094	2	508.737814	1015.46108	-0.31807	-0.00016181	-1.2297	-0.00062557	-1.5477	-0.00078739	508.73762784043765	40.534	0.86011	40.534	40.203	41.063	0					20	16	2	0	0	0	0.5339	1	13818	13818		18.135	1.1927	1	2580300	+		53279	25743	38715	39026	52027	52027					-0.046036997244755185
TEPDSLTWVY	10	Unmodified	_TEPDSLTWVY_					0	0	0			REV__ENST00000515743.5_1_4:10078742-10093271:-|nuORF	REV__ENST00000515743.5_1_4:10078742-10093271:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	403.9508361816406	3	404.1924	1209.55537	-0.61628	-0.0002491	-4.1445	-0.0016752	-4.7608	-0.0019243	404.18993681852675	19.394	0.20259	19.394	19.318	19.521	0					5	3	2	0	0	0	0.93578	1	4840	4840		3.3196	1.4133	1	1560000	+		53280	16585	38716	39027	52028	52028					-0.041026056930149934
TEPEEEPLKQF	11	Unmodified	_TEPEEEPLKQF_					0	0	0			REV__ENST00000483972.1_1_6:31548488-31550294:-|nuORF	REV__ENST00000483972.1_1_6:31548488-31550294:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	449.2857971191406	3	449.553997	1345.64016	-0.23785	-0.00010692	0.80942	0.00036388	0.57158	0.00025695	449.5544233054097	33.132	0.20105	33.132	32.989	33.19	0					5	3	2	0	0	0	0.99847	1	10807	10807		5.0475	0.64137	1	1484600	+		53281	22730	38717	39028	52029	52029					-0.018832799470601458
TEPELGLEANL	11	Unmodified	_TEPELGLEANL_					0	0	0			REV__ENSG00000144567|ENST00000430297|RETREG2	REV__ENSG00000144567|ENST00000430297|RETREG2	MULTI-SECPEP	A375_MHC_IP_R2	2	593.1748046875	2	593.303518	1184.59248	-0.58104	-0.00034473	-0.45924	-0.00027247	-1.0403	-0.0006172	593.3031662534968	32.198	0.15382	32.935	32.806	32.96	0.73692					4	2	2	0	0	0	0.9889	1	11431	11431		8.1555	3.8263	1	1136900	+		53282	19431	38718	39029	52030	52030					0.007570658527811247
TEPEQPVRHY	10	Unmodified	_TEPEQPVRHY_					0	0	0		ENSG00000174197|ENST00000703841|MGA;MGA|p.K1567Yfs*16|1|0.2|ENSG00000174197|chr15:41742656-41742663|CAGAAGTT/-|frameshift_variant;MGA|p.V1809Afs*7|1|0.16|ENSG00000174197|chr15:41748847-41748863|TTGTCCAGCTTCTACCT/-|frameshift_variant;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;MGA|p.P1158S|1|0.35|ENSG00000174197|chr15:41727221-41727221|C/T|missense_variant	ENSG00000174197|ENST00000703841|MGA	ENSG00000174197|ENST00000703841|MGA	MULTI-SECPEP	A375_MHC_IP_R1	1	419.6069030761719	3	419.207043	1254.5993	-0.039275	-1.6464E-05	-0.14598	-6.1194E-05	-0.18525	-7.7658E-05	419.2069805838233	19.398	0.38484	19.398	19.238	19.623	0					14	7	3	0	0	0	0.55923	1	4838	4838		39.213	39.213	1	3826700			53283	7862	38719	39030	52031	52031					-0.01781576475991642
TEPFGIALTFF	11	Unmodified	_TEPFGIALTFF_					0	0	0		CASR|p.L618F|1|0.33|ENSG00000036828|chr3:122283806-122283806|C/T|missense_variant	CASR|p.L618F|1|0.33|ENSG00000036828|chr3:122283806-122283806|C/T|missense_variant	CASR|p.L618F|1|0.33|ENSG00000036828|chr3:122283806-122283806|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	414.94354248046875	3	414.885018	1241.63323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.202	1	59.202	58.702	59.702	0								0	0	0	0.16172	1	21289	21289		9.7643	4.3615	1				53284	297	38720	39031	52032	52032					0.02207451963022322
TEPFQISLP	9	Unmodified	_TEPFQISLP_					0	0	0		nc|ENSG00000185133|Q15735-3|INPP5J;nc|ENSG00000185133|Q15735-2|INPP5J;ENSG00000185133|ENST00000331075|INPP5J	nc|ENSG00000185133|Q15735-3|INPP5J	nc|ENSG00000185133|Q15735-3|INPP5J	MULTI-MSMS	A375_MHC_IP_R2	2	516.6731567382812	2	516.274032	1030.53351	-0.59016	-0.00030468	0.29551	0.00015256	-0.29465	-0.00015212	516.7758805954143	43.622	1.0617	44.392	43.974	45.036	0.76999					26	18	2	0	0	0	0.25276	1	16225	16225		34.102	8.7031	1	7117900			53285	8644	38721	39032	52033	52033					0.019466343491103544
TEPGFGSV	8	Unmodified	_TEPGFGSV_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	A375_MHC_IP_R1	1	397.9398498535156	2	397.189968	792.365384	-0.070723	-2.8091E-05	0.68056	0.00027031	0.60983	0.00024222	397.1902014522305	33.573	0.40443	33.573	33.393	33.798	0					10	7	2	0	0	0	0.94479	1	10964	10964		0.52476	0	1	1023600	+		53286	16777	38722	39033	52034	52034					-0.03910427844698461
TEPHRVFLT	9	Unmodified	_TEPHRVFLT_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-SECPEP	A375_MHC_IP_R2	2	367.945068359375	3	367.201341	1098.58219	-0.079076	-2.9037E-05	0.47916	0.00017595	0.40008	0.00014691	367.2014316964925	34.458	0.40825	35.21	35.006	35.414	0.75225					10	7	2	0	0	0	0.71541	1	12448	12448		4.5289	0	1	1379100	+		53287	18320	38723	39034	52035	52035					0.03684547708849095
TEPIESNSL	9	Unmodified	_TEPIESNSL_					0	0	0			REV__ENSG00000143199|ENST00000367851|ADCY10	REV__ENSG00000143199|ENST00000367851|ADCY10	MSMS	A375_MHC_IP_R2	2	495.15069580078125	2	495.242929	988.471305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.048	1	42.822	42.322	43.322	0.77451								0	0	0	0.14767	1	15630	15630		25.399	0	1		+		53288	19340	38724	39035	52036	52036					-0.023391367898966564
TEPINTTYSY	10	Unmodified	_TEPINTTYSY_					0	0	0		ENSG00000163257|ENST00000382247|DCAF16	ENSG00000163257|ENST00000382247|DCAF16	ENSG00000163257|ENST00000382247|DCAF16	MULTI-MSMS	A375_MHC_IP_R1	1	596.6934204101562	2	594.774593	1187.53463	-0.28567	-0.00016991	0.01595	9.4864E-06	-0.26972	-0.00016042	594.774618677064	50.023	2.2375	50.023	49.642	51.879	0					148	43	6	0	0	0	0.69833	1	17806	17806		13.042	5.1323	1	499080000			53289	6641	38725	39036	52037	52037					-0.05163196072658138
TEPLDFNDY	9	Unmodified	_TEPLDFNDY_					0	0	0		nc|ENSG00000169554|O60315-2|ZEB2;ENSG00000169554|ENST00000627532|ZEB2	nc|ENSG00000169554|O60315-2|ZEB2	nc|ENSG00000169554|O60315-2|ZEB2	MULTI-MSMS	A375_MHC_IP_R1	1	558.189208984375	2	557.240386	1112.46622	-0.47516	-0.00026478	-0.12637	-7.0419E-05	-0.60153	-0.0003352	557.2401575567941	47.44	0.86118	47.44	47.159	48.02	0					46	16	4	0	0	0	0.6898	1	16708	16708		7.9102	0.62092	1	14449000			53290	7413	38726	39037	52038	52038					-0.0855144065251352
TEPLKKKQY	9	Unmodified	_TEPLKKKQY_					0	0	0			REV__TCP11L2|p.E317K|1|0.15|ENSG00000166046|chr12:106335815-106335815|G/A|missense_variant	REV__TCP11L2|p.E317K|1|0.15|ENSG00000166046|chr12:106335815-106335815|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	567.642578125	2	567.829506	1133.64446	-0.65615	-0.00037258	-0.20091	-0.00011408	-0.85706	-0.00048666	568.3308619249343	54.19	0.25352	54.941	54.814	55.068	0.75075					7	4	2	0	0	0	0.78753	1	20492	20492		4.3292	4.3292	1	783410	+		53291	28087	38727	39038	52039	52039					0.08298274057187882
TEPPPLLVY	9	Unmodified	_TEPPPLLVY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R1	1	515.6885375976562	2	514.786776	1027.559	-0.38926	-0.00020038	0.23854	0.0001228	-0.15071	-7.7585E-05	514.7868186228611	110.98	0.81944	110.98	110.59	111.41	0					49	15	4	0	0	0	0.018481	1	40650	40650		85.357	49.313	1	22664000			53292	7864	38728	39039	52040	52040					0.04632108871510354
TEPPPLLVY	9	Unmodified	_TEPPPLLVY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	A375_MHC_IP_R1	1	1028.482177734375	1	1028.56627	1027.559	0.30137	0.00030998	0.95741	0.00098476	1.2588	0.0012947	1028.5668692580637	111.01	0.81911	111.01	110.65	111.46	0					34	15	3	0	0	0	0.1277	1	40665	40665		54.774	43.95	1	10257000			53293	7864	38728	39039	52041	52041					0.04632108871510354
TEPPPLLVY	9	Unmodified	_TEPPPLLVY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R2	2	515.68798828125	2	514.786776	1027.559	-0.60934	-0.00031368	-0.15678	-8.0709E-05	-0.76612	-0.00039439	514.7866317227191	110.17	0.81902	110.91	110.53	111.34	0.73692					51	15	4	0	0	0	0.042197	2	41492	41492;41696		67.344	38.857	1	24444000			53294	7864	38728	39039	52042;52043	52042					0.04632108871510354
TEPPPLLVY	9	Unmodified	_TEPPPLLVY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	A375_MHC_IP_R2	2	1028.87646484375	1	1028.56627	1027.559	0.19	0.00019543	0.26098	0.00026844	0.45098	0.00046386	1028.5661400035801	110.16	0.76778	110.9	110.53	111.29	0.73691					25	14	2	0	0	0	0.16229	1	41480	41480		57.471	41.624	1	11796000			53295	7864	38728	39039	52044	52044					0.04632108871510354
TEPPPPPPPQ	10	Unmodified	_TEPPPPPPPQ_					0	0	0		ENSG00000169436|ENST00000303045|COL22A1;nc|ENSG00000169436|Q8NFW1-2|COL22A1	ENSG00000169436|ENST00000303045|COL22A1	ENSG00000169436|ENST00000303045|COL22A1	MULTI-MSMS	A375_MHC_IP_R1	1	529.6721801757812	2	528.771657	1055.52876	-0.51269	-0.0002711	-0.13811	-7.3029E-05	-0.6508	-0.00034412	528.771509165135	63.585	1.0184	63.585	63.274	64.292	0					54	19	4	0	0	0	0.52785	1	23083	23083		26.268	0.86883	1	11482000			53296	7408	38729	39040	52045	52045					0.00321750206330762
TEPQEPLIPE	10	Unmodified	_TEPQEPLIPE_					0	0	0		ZC4H2|p.P150L|1|0.83|ENSG00000126970|chrX:64919154-64919154|G/A|missense_variant	ZC4H2|p.P150L|1|0.83|ENSG00000126970|chrX:64919154-64919154|G/A|missense_variant	ZC4H2|p.P150L|1|0.83|ENSG00000126970|chrX:64919154-64919154|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	384.62127685546875	3	384.864283	1151.57102	-0.26161	-0.00010069	2.6632	0.001025	2.4016	0.00092429	384.86528395312695	50.577	0.5068	51.331	51.006	51.513	0.75406					13	9	2	0	0	0	0.92514	1	19075	19075		4.7159	4.1527	1	1280300			53297	30191	38730	39041	52046	52046					0.0012968082405677706
TEPSVHSHTE	10	Unmodified	_TEPSVHSHTE_					0	0	0			REV__ENST00000464324.5_1_11:64494776-64507712:-|nuORF	REV__ENST00000464324.5_1_11:64494776-64507712:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	375.572509765625	3	375.171999	1122.49417	0.35208	0.00013209	0.50988	0.00019129	0.86196	0.00032338	375.1722390481551	34.808	0.71147	34.808	34.557	35.269	0					33	13	3	0	0	0	0.92603	1	11491	11491		3.3196	0	1	16679000	+		53298	16547	38731	39042	52047	52047					-0.062181176724152465
TEPSYSSSWH	10	Unmodified	_TEPSYSSSWH_					0	0	0			REV__ENSG00000186496|ENST00000589332|ZNF396	REV__ENSG00000186496|ENST00000589332|ZNF396	MULTI-SECPEP	A375_MHC_IP_R2	2	394.2340087890625	3	394.168366	1179.48327	-0.47211	-0.00018609	0.56868	0.00022415	0.096569	3.8065E-05	394.16875346582697	61.082	0.5033	61.827	61.618	62.121	0.74504					12	9	2	0	0	0	0.94163	1	23209	23209		1.7423	0	1	1035700	+		53299	21974	38732	39043	52048	52048					-0.09929520046694051
TEPTCMELPEE	11	Unmodified	_TEPTCMELPEE_					0	0	0		nc|ENSG00000178997|Q8NHP7-2|EXD1;nc|ENSG00000178997|Q8NHP7|EXD1;ENSG00000178997|ENST00000458580|EXD1	nc|ENSG00000178997|Q8NHP7-2|EXD1	nc|ENSG00000178997|Q8NHP7-2|EXD1	MULTI-SECPEP	A375_MHC_IP_R1	1	427.24615478515625	3	426.845795	1277.51555	-0.2304	-9.8345E-05	0.034162	1.4582E-05	-0.19624	-8.3764E-05	426.84617091571636	32.154	0.71484	32.154	31.87	32.585	0					51	13	6	0	0	0	0.81748	1	10340	10340		32.898	10.789	1	50425000			53300	8195	38733	39044	52049	52049					-0.11210236750207514
TEPTCMELPEE	11	Unmodified	_TEPTCMELPEE_					0	0	0		nc|ENSG00000178997|Q8NHP7-2|EXD1;nc|ENSG00000178997|Q8NHP7|EXD1;ENSG00000178997|ENST00000458580|EXD1	nc|ENSG00000178997|Q8NHP7-2|EXD1	nc|ENSG00000178997|Q8NHP7-2|EXD1	MULTI-SECPEP	A375_MHC_IP_R2	2	427.2460632324219	3	426.845795	1277.51555	-0.20935	-8.9359E-05	0.23446	0.00010008	0.025115	1.072E-05	426.8461792781961	31.44	0.967	32.158	31.821	32.788	0.71857					57	18	6	0	0	0	0.83702	1	11087	11087		20.871	0	1	46859000			53301	8195	38733	39044	52050	52050					-0.11210236750207514
TEPTEKELH	9	Unmodified	_TEPTEKELH_					0	0	0			REV__ENSG00000140986|ENST00000268661|RPL3L	REV__ENSG00000140986|ENST00000268661|RPL3L	MULTI-SECPEP	A375_MHC_IP_R1	1	541.6856689453125	2	542.269478	1082.5244	-0.43619	-0.00023653	-1.1927	-0.00064679	-1.6289	-0.00088332	542.7690390779176	43.358	0.30566	43.358	43.095	43.4	0					8	5	2	0	0	0	0.58271	1	15022	15022		20.454	0	1	672580	+		53302	19236	38734	39045	52051	52051					-0.013557590072423409
TEPTKHGETV	10	Unmodified	_TEPTKHGETV_					0	0	0		ZNF831|p.K1462Nfs*38|1|0.42|ENSG00000124203|chr20:59254090-59254090|C/-|frameshift_variant;ENSG00000124203|ENST00000371030|ZNF831	ZNF831|p.K1462Nfs*38|1|0.42|ENSG00000124203|chr20:59254090-59254090|C/-|frameshift_variant	ZNF831|p.K1462Nfs*38|1|0.42|ENSG00000124203|chr20:59254090-59254090|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	549.6690063476562	2	549.774928	1097.5353	-0.40935	-0.00022505	-1.0409	-0.00057228	-1.4503	-0.00079733	549.7746343555098	51.92	0.76224	51.92	51.424	52.186	0					54	14	6	0	0	0	0.48529	1	18413	18413		29.082	0	1	10710000			53303	3883	38735	39046	52052	52052					-0.00956356632968891
TEPTRLLY	8	Unmodified	_TEPTRLLY_					0	0	0		SEMA4C|p.G63R|1|0.5|ENSG00000168758|chr2:96866354-96866354|C/T|missense_variant	SEMA4C|p.G63R|1|0.5|ENSG00000168758|chr2:96866354-96866354|C/T|missense_variant	SEMA4C|p.G63R|1|0.5|ENSG00000168758|chr2:96866354-96866354|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	496.110595703125	2	496.7742	991.533846	-0.25558	-0.00012697	-0.23679	-0.00011763	-0.49237	-0.0002446	496.773961559988	45.913	0.35614	45.913	45.687	46.043	0					10	6	2	0	0	0	0.96266	1	16125	16125		16.942	6.8684	1	1082100			53304	29131	38736	39047	52053	52053					0.03774054068958321
TEPTRNVFE	9	Unmodified	_TEPTRNVFE_					0	0	0			REV__nc|ENSG00000257524|Q969X2-2|ST6GALNAC6	REV__nc|ENSG00000257524|Q969X2-2|ST6GALNAC6	MULTI-MSMS	A375_MHC_IP_R1	1	547.6970825195312	2	546.769645	1091.52474	-0.51245	-0.00028019	1.0957	0.00059912	0.58329	0.00031893	546.7697152903843	61.794	0.76602	61.794	61.432	62.198	0					32	14	3	0	0	0	0.63811	1	22290	22290		12.532	1.7076	1	2751500	+		53305	20169	38737	39048	52054	52054					-0.017363392873676275
TEPWDCSPVC	10	Unmodified	_TEPWDCSPVC_					0	0	0		ENST00000442633.1_1_3:196054345-196065140:-|nuORF	ENST00000442633.1_1_3:196054345-196065140:-|nuORF	ENST00000442633.1_1_3:196054345-196065140:-|nuORF	MSMS	A375_MHC_IP_R2	2	568.6847534179688	2	568.722992	1135.43143	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.563	1	42.337	41.837	42.837	0.77451								0	0	0	0.15105	1	15427	15427		15.847	7.937	1				53306	11996	38738	39049	52055	52055					-0.13086723056471783
TEPWPHRGEL	10	Unmodified	_TEPWPHRGEL_					0	0	0		MAP1A|p.R2442W|2|0.29|ENSG00000166963|chr15:43528797-43528797|C/T|missense_variant	MAP1A|p.R2442W|2|0.29|ENSG00000166963|chr15:43528797-43528797|C/T|missense_variant	MAP1A|p.R2442W|2|0.29|ENSG00000166963|chr15:43528797-43528797|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	611.2635498046875	2	611.304187	1220.59382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.51	1	134.51	134.01	135.01	0								0	0	0	0.15541	1	51873	51873		3.2813	0.28607	1				53307	14346	38739	39050	52056	52056					-0.007652552678109714
TEPYLLPLIF	10	Unmodified	_TEPYLLPLIF_					0	0	0			REV__ENST00000367279.8_1_1:202128675-202129107:-|nuORF	REV__ENST00000367279.8_1_1:202128675-202129107:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	402.27508544921875	3	402.565397	1204.67436	-0.28205	-0.00011354	0.16757	6.7456E-05	-0.11448	-4.6087E-05	402.8995805834648	19.437	0.75876	20.04	19.683	20.442	0.60308					42	14	4	0	0	0	0.92957	1	6095	6095		3.3196	3.3196	1	6034900	+		53308	23965	38740	39051	52057	52057					0.08021213002530203
TEQCERRY	8	Unmodified	_TEQCERRY_					0	0	0			REV__nc|ENSG00000010310|P48546-2|GIPR	REV__nc|ENSG00000010310|P48546-2|GIPR	MULTI-MSMS	A375_MHC_IP_R2	2	542.7234497070312	2	542.745647	1083.47674	-0.98373	-0.00053392	0.13427	7.2876E-05	-0.84946	-0.00046104	542.7457796199076	71.05	0.65871	71.785	71.605	72.264	0.73421					17	12	2	0	0	0	0.77488	1	27033	27033		13.508	0.97634	1	3369500	+		53309	16193	38741	39052	52058	52058					-0.06165736479078987
TEQDLKEYF	9	Unmodified	_TEQDLKEYF_					0	0	0		ENSG00000120948|ENST00000240185|TARDBP	ENSG00000120948|ENST00000240185|TARDBP	ENSG00000120948|ENST00000240185|TARDBP	MULTI-MSMS	A375_MHC_IP_R1	1	587.1771850585938	2	586.777136	1171.53972	-0.3084	-0.00018096	0.94354	0.00055365	0.63514	0.00037269	586.7776970167429	64.47	0.96412	64.47	63.887	64.851	0					55	18	4	0	0	0	0.005606	1	23269	23269		189.73	104.46	1	17594000			53310	3701	38742	39053	52059	52059					-0.03918892210049307
TEQDLKEYF	9	Unmodified	_TEQDLKEYF_					0	0	0		ENSG00000120948|ENST00000240185|TARDBP	ENSG00000120948|ENST00000240185|TARDBP	ENSG00000120948|ENST00000240185|TARDBP	MULTI-MSMS	A375_MHC_IP_R2	2	587.1773071289062	2	586.777136	1171.53972	-0.49034	-0.00028772	0.61639	0.00036168	0.12605	7.3964E-05	586.7776273189437	63.783	1.1693	64.523	63.885	65.054	0.74023					52	22	4	0	0	0	0.0012561	1	24135	24135		151.48	73.33	1	17360000			53311	3701	38742	39053	52060	52060					-0.03918892210049307
TEQEIRSLF	9	Unmodified	_TEQEIRSLF_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4;ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173933|ENST00000310092|RBM4;ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	A375_MHC_IP_R1	1	562.193359375	2	561.793121	1121.57169	-0.28415	-0.00015963	-0.21641	-0.00012158	-0.50056	-0.00028121	561.7931633034173	71.481	0.50755	71.481	71.108	71.615	0					13	9	2	0	0	0	0.10518	1	25993	25993		45.74	15.103	1	2111000			53312	7843;7840	38743	39054	52061	52061					0.0157652026375672
TEQELKHLIL	10	Unmodified	_TEQELKHLIL_					0	0	0		ENST00000531595.3_1_15:80762598-80780115:+|nuORF;ENST00000529181.1_1_15:80696764-80767593:+|nuORF;nc|ENSG00000172379|Q9HBZ2-2|ARNT2;ENSG00000172379|ENST00000303329|ARNT2	ENST00000531595.3_1_15:80762598-80780115:+|nuORF	ENST00000531595.3_1_15:80762598-80780115:+|nuORF	MSMS	A375_MHC_IP_R1	1	408.6153259277344	3	408.571322	1222.69214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.904	1	35.904	35.404	36.404	0								0	0	0	0.14919	1	11977	11977		12.856	4.5695	1				53313	7705	38744	39055	52062	52062					0.08969928257397441
TEQFFEVL	8	Unmodified	_TEQFFEVL_					0	0	0			REV__ENSG00000148429|ENST00000609104|USP6NL	REV__ENSG00000148429|ENST00000609104|USP6NL	MULTI-MSMS	A375_MHC_IP_R1	1	506.71331787109375	2	506.752933	1011.49131	-0.58179	-0.00029482	0.19204	9.7315E-05	-0.38976	-0.00019751	506.7530138980593	84.508	0.70962	84.508	84.091	84.8	0					25	13	3	0	0	0	0.77488	2	30841	30841;31060		13.508	3.8293	1	2839500	+		53314	15677	38745	39056	52063;52064	52063					-0.01397341059282553
TEQKLKTLSQ	10	Unmodified	_TEQKLKTLSQ_					0	0	0			REV__ENSG00000114446|ENST00000264538|IFT57	REV__ENSG00000114446|ENST00000264538|IFT57	MULTI-SECPEP	A375_MHC_IP_R2	2	588.6630859375	2	588.335153	1174.65575	-0.49154	-0.00028919	1.0344	0.00060858	0.54287	0.00031939	588.8373948200988	64.034	0.35575	64.774	64.699	65.054	0.74022					8	6	2	0	0	0	0.78945	1	24278	24278		13.906	0	1	862990	+		53315	17824	38746	39057	52065	52065					0.07541051360658457
TEQNELSF	8	Unmodified	_TEQNELSF_					0	0	0			REV__ENSG00000284484|ENST00000640173|CPHXL2	REV__ENSG00000284484|ENST00000640173|CPHXL2	MULTI-MSMS	A375_MHC_IP_R1	1	484.6219482421875	2	484.221997	966.429441	-0.4388	-0.00021247	1.5209	0.00073645	1.0821	0.00052397	484.2228785622044	46.855	0.76994	46.855	46.596	47.366	0					19	14	2	0	0	0	0.61116	1	16462	16462		44.407	12.102	1	1722000	+		53316	23003	38747	39058	52066	52066					-0.05511692478421537
TEQPPPRSW	9	Unmodified	_TEQPPPRSW_					0	0	0		ENSG00000113300|ENST00000261951|CNOT6	ENSG00000113300|ENST00000261951|CNOT6	ENSG00000113300|ENST00000261951|CNOT6	MULTI-MSMS	A375_MHC_IP_R1	1	549.2633666992188	2	549.272355	1096.53016	-0.83122	-0.00045657	-0.1699	-9.3322E-05	-1.0011	-0.00054989	549.2721344140022	30.518	1.3648	30.518	30.049	31.414	0					41	26	2	0	0	0	0.19747	1	9732	9732		38.176	14.155	1	3626100			53317	3139	38748	39059	52067	52067					-0.01424615704900134
TEQPPPRSW	9	Unmodified	_TEQPPPRSW_					0	0	0		ENSG00000113300|ENST00000261951|CNOT6	ENSG00000113300|ENST00000261951|CNOT6	ENSG00000113300|ENST00000261951|CNOT6	MULTI-MSMS	A375_MHC_IP_R2	2	549.263427734375	2	549.272355	1096.53016	-1.1028	-0.00060576	0.085317	4.6862E-05	-1.0175	-0.0005589	549.2721826619684	29.758	1.8715	30.456	30.032	31.903	0.69872					64	36	3	0	0	0	0.28079	1	10621	10621		32.037	13.903	1	4635100			53318	3139	38748	39059	52068	52068					-0.01424615704900134
TEQRNVYKDY	10	Unmodified	_TEQRNVYKDY_					0	0	0		nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1	nc|ENSG00000197959|Q9UQ16-2|DNM3	nc|ENSG00000197959|Q9UQ16-2|DNM3	MULTI-SECPEP	A375_MHC_IP_R1	1	439.60345458984375	3	439.214086	1314.62043	-0.165	-7.2472E-05	-0.00692	-3.0394E-06	-0.17192	-7.5512E-05	439.2140709466631	19.852	0.35694	19.852	19.623	19.98	0					14	6	3	0	0	0	0.23069	1	4990	4990		74.094	54.107	1	4742600			53319	9213	38749	39060	52069	52069					-0.02429611167144685
TEQSPEVHV	9	Unmodified	_TEQSPEVHV_					0	0	0			REV__ENSG00000114455|ENST00000467761|HHLA2	REV__ENSG00000114455|ENST00000467761|HHLA2	MULTI-SECPEP	A375_MHC_IP_R2	2	512.634765625	2	513.248546	1024.48254	-0.7972	-0.00040916	0.35222	0.00018078	-0.44498	-0.00022839	513.2487751624411	39.776	0.40702	40.55	40.32	40.727	0.77451					12	7	2	0	0	0	0.67483	1	14653	14653		20.454	13.823	1	2747700	+		53320	17825	38750	39061	52070	52070					-0.02872314695764544
TEQSQIKGYVW	11	Unmodified	_TEQSQIKGYVW_					0	0	0		ENSG00000205155|ENST00000587708|PSENEN	ENSG00000205155|ENST00000587708|PSENEN	ENSG00000205155|ENST00000587708|PSENEN	MULTI-MSMS	A375_MHC_IP_R1	1	670.7390747070312	2	669.838059	1337.66157	-0.48837	-0.00032713	0.27845	0.00018651	-0.20992	-0.00014061	669.8381673192433	62.583	0.82012	62.583	62.249	63.069	0					31	15	3	0	0	0	0.30938	1	22596	22596		46.022	30.774	1	6756900			53321	9498	38751	39062	52071	52071					0.006241498723284167
TEQSQIKGYVW	11	Unmodified	_TEQSQIKGYVW_					0	0	0		ENSG00000205155|ENST00000587708|PSENEN	ENSG00000205155|ENST00000587708|PSENEN	ENSG00000205155|ENST00000587708|PSENEN	MULTI-SECPEP	A375_MHC_IP_R2	2	670.2383422851562	2	669.838059	1337.66157	-1.0331	-0.00069201	0.16937	0.00011345	-0.86374	-0.00057857	669.8381650851753	61.904	0.55557	62.647	62.37	62.925	0.74263					28	10	3	0	0	0	0.0136	1	23448	23448		128.87	86.914	1	6480200			53322	9498	38751	39062	52072	52072					0.006241498723284167
TEQTAPKIF	9	Unmodified	_TEQTAPKIF_					0	0	0		ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1793823242188	2	517.779482	1033.54441	-1.0042	-0.00051997	1.0183	0.00052723	0.014027	7.2626E-06	517.7801796983391	49.717	0.76163	50.472	50.092	50.854	0.75406					21	14	2	0	0	0	0.34746	1	18700	18700		31.268	0	1	2723600			53323	8679	38752	39063	52073	52073					0.028980367233543802
TEQTKFRDY	9	Unmodified	_TEQTKFRDY_					0	0	0		FUT11|p.W479R|1|0.13|ENSG00000196968|chr10:73775641-73775641|T/C|missense_variant	FUT11|p.W479R|1|0.13|ENSG00000196968|chr10:73775641-73775641|T/C|missense_variant	FUT11|p.W479R|1|0.13|ENSG00000196968|chr10:73775641-73775641|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	396.86102294921875	3	396.527894	1186.56185	-0.13018	-5.162E-05	2.6048	0.0010329	2.4746	0.00098125	396.52788527604486	31.983	0.30822	31.983	31.819	32.127	0					7	5	2	0	0	0	0.64971	1	10335	10335		11.495	1.7305	1	1222200			53324	14026	38753	39064	52074	52074					-0.023966677416183302
TERCIWYFY	9	Unmodified	_TERCIWYFY_					0	0	0			REV__ENSG00000007952|ENST00000372966|NOX1	REV__ENSG00000007952|ENST00000372966|NOX1	MULTI-SECPEP	A375_MHC_IP_R2	2	426.9472351074219	3	427.53047	1279.56958	-0.4974	-0.00021265	0.021264	9.091E-06	-0.47613	-0.00020356	427.53055473103905	19.864	0.40311	20.474	20.197	20.6	0.61029					11	7	2	0	0	0	0.76187	1	6126	6126		7.609	2.893	1	1322500	+		53325	16163	38754	39065	52075	52075					-0.05902231745699282
TERDDDYAGF	10	Unmodified	_TERDDDYAGF_					0	0	0		ENST00000484734.1_1_15:39885316-39885917:+|nuORF;nc|ENSG00000137801|P07996-2|THBS1;ENSG00000137801|ENST00000260356|THBS1;CON__Q28194	ENST00000484734.1_1_15:39885316-39885917:+|nuORF	ENST00000484734.1_1_15:39885316-39885917:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	594.1868896484375	2	594.743825	1187.4731	-0.11664	-6.9369E-05	0.43635	0.00025952	0.31972	0.00019015	594.743805712493	21.58	0.30338	21.58	21.454	21.757	0					6	5	2	0	0	0	0.92957	1	5664	5664		10.074	2.7847	1	1658100		+	53326	608	38755	39066	52076	52076					-0.11314127771970561
TEREKKKKIL	10	Unmodified	_TEREKKKKIL_					0	0	0		nc|ENSG00000118194|P45379-12|TNNT2;nc|ENSG00000118194|P45379-9|TNNT2;nc|ENSG00000118194|P45379-7|TNNT2;nc|ENSG00000118194|P45379-11|TNNT2;nc|ENSG00000118194|P45379-6|TNNT2;nc|ENSG00000118194|P45379-8|TNNT2;nc|ENSG00000118194|P45379-10|TNNT2;nc|ENSG00000118194|P45379-4|TNNT2;nc|ENSG00000118194|P45379-5|TNNT2;nc|ENSG00000118194|P45379-3|TNNT2;nc|ENSG00000118194|P45379-2|TNNT2;ENSG00000118194|ENST00000656932|TNNT2	nc|ENSG00000118194|P45379-12|TNNT2	nc|ENSG00000118194|P45379-12|TNNT2	MSMS	A375_MHC_IP_R1	1	636.8721923828125	2	636.903537	1271.79252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.468	1	88.468	87.968	88.968	0								0	0	0	0.15451	1	32479	32479		6.2058	2.9245	1				53327	3529	38756	39067	52077	52077					0.16749585311049486
TERGDEFEET	10	Unmodified	_TERGDEFEET_					0	0	0			REV__nc|ENSG00000120251|P42262-4|GRIA2	REV__nc|ENSG00000120251|P42262-4|GRIA2	MULTI-SECPEP	A375_MHC_IP_R1	1	607.04248046875	2	606.754389	1211.49423	-0.22178	-0.00013456	-0.95237	-0.00057785	-1.1741	-0.00071242	606.7535941524831	50.024	0.51188	50.024	49.793	50.305	0					14	9	2	0	0	0	0.8866	1	17719	17719		19.362	0	1	2593300	+		53328	18116	38757	39068	52078	52078					-0.1030616246309819
TERGSYDKL	9	Unmodified	_TERGSYDKL_					0	0	0			REV__tr|U7T601|U7T601_FUSNUTryptophansynthasebetachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trpBPE=3SV=1	REV__tr|U7T601|U7T601_FUSNUTryptophansynthasebetachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trpBPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	357.44903564453125	3	356.848856	1067.52474	-0.49973	-0.00017833	-0.030529	-1.0894E-05	-0.53026	-0.00018922	356.84880419889873	19.419	0.75872	20.022	19.633	20.392	0.60308					29	14	3	0	0	0	0.65246	1	6005	6005		0.77653	0	1	4844300	+		53329	28848	38758	39069	52079	52079					-0.006323392873810008
TERIEETTV	9	Unmodified	_TERIEETTV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R1	1	360.25262451171875	3	359.852266	1076.53497	0.52057	0.00018733	1.8463	0.0006644	2.3669	0.00085173	359.852608579772	22.626	0.3538	22.626	22.469	22.823	0					9	6	2	0	0	0	0.76187	1	6117	6117		4.5289	2.2461	1	1604400	+		53330	19932	38759	39070	52080	52080					-0.0002377635280481627
TERIEETTV	9	Unmodified	_TERIEETTV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	A375_MHC_IP_R2	2		3	359.852266	1076.53497	-0.54343	-0.00019556	1.3479	0.00048506	0.80451	0.0002895	359.8527153753818	22.151	0.25362	22.77	22.643	22.897	0.61932	0.072012	-7.8184E-05	NaN	4.5289	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1234400	+		53331	19932	38759	39070							-0.0002377635280481627
TERIQDINI	9	Unmodified	_TERIQDINI_					0	0	0			REV__ENSG00000059691|ENST00000263985|GATB	REV__ENSG00000059691|ENST00000263985|GATB	MULTI-SECPEP	A375_MHC_IP_R1	1	368.2466735839844	3	367.868139	1100.58259	0.50075	0.00018421	0.28622	0.00010529	0.78698	0.0002895	367.86822663151776	21.348	0.25468	21.348	21.148	21.403	0					6	4	2	0	0	0	0.77003	1	5570	5570		2.2828	0.69049	1	1141300	+		53332	16442	38760	39071	52081	52081					0.03631922638032847
TERIWEMHL	9	Unmodified	_TERIWEMHL_					0	0	0			REV__nc|ENSG00000135835|Q5VZ46-2|KIAA1614	REV__nc|ENSG00000135835|Q5VZ46-2|KIAA1614	MULTI-SECPEP	A375_MHC_IP_R1	1	405.2998352050781	3	405.537736	1213.59138	-0.24786	-0.00010052	-0.80138	-0.00032499	-1.0492	-0.00042551	405.5374933857656	23.009	0.30116	23.009	22.773	23.074	0					7	5	2	0	0	0	0.77834	1	6212	6212		2.7352	0	1	1785800	+		53333	18890	38761	39072	52082	52082					-0.0068742699711492605
TERKKRRKK	9	Unmodified	_TERKKRRKK_					0	0	0		nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A	nc|ENSG00000066933|B2RTY4-5|MYO9A	nc|ENSG00000066933|B2RTY4-5|MYO9A	MSMS	A375_MHC_IP_R2	2	410.6069641113281	3	410.60195	1228.78402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.673	1	24.303	23.803	24.803	0.63014								0	0	0	0.15486	1	7659	7659		2.7352	0.23671	1				53334	1423	38762	39073	52083	52083					0.17878076185070313
TERKLKERKR	10	Unmodified	_TERKLKERKR_					0	0	0			REV__nc|ENSG00000156983|P55201-4|BRPF1	REV__nc|ENSG00000156983|P55201-4|BRPF1	MSMS	A375_MHC_IP_R1	1	672.5071411132812	2	672.415134	1342.81572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.99	1	106.99	106.49	107.49	0								0	0	0	0.1552	1	39265	39265		3.9444	0	1		+		53335	20004	38763	39074	52084	52084					0.15802024148342753
TERLGTRER	9	Unmodified	_TERLGTRER_					0	0	0		nc|ENSG00000165458|O15357-2|INPPL1;INPPL1|p.S1068Qfs*17|1|0.39|ENSG00000165458|chr11:72237439-72237440|-/C|frameshift_variant;ENSG00000165458|ENST00000298229|INPPL1	nc|ENSG00000165458|O15357-2|INPPL1	nc|ENSG00000165458|O15357-2|INPPL1	MULTI-SECPEP	A375_MHC_IP_R1	1	373.480712890625	3	373.207266	1116.59997	0.4912	0.00018332	-1.2881	-0.00048073	-0.79691	-0.00029741	373.2056410243687	22.967	0.20071	22.967	22.873	23.074	0					5	3	2	0	0	0	0.75164	1	6252	6252		1.7423	0.8779	1	615590			53336	6953	38764	39075	52085	52085					0.04633262963693596
TERLKSLFN	9	Unmodified	_TERLKSLFN_					0	0	0			REV__RGS7BP|p.L212F|1|0.33|ENSG00000186479|chr5:64598387-64598387|C/T|missense_variant	REV__RGS7BP|p.L212F|1|0.33|ENSG00000186479|chr5:64598387-64598387|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	369.59490966796875	3	369.876746	1106.60841	0.078566	2.906E-05	-1.966	-0.00072718	-1.8874	-0.00069812	369.87578786570805	26.809	0.40973	27.469	27.313	27.722	0.65992					10	7	2	0	0	0	0.7911	1	9033	9033		4.5289	2.4429	1	1502600	+		53337	27887	38765	39076	52086	52086					0.05936816880330298
TERLQERF	8	Unmodified	_TERLQERF_					0	0	0		ENST00000392054.7_1_2:230127567-230135921:-|nuORF	ENST00000392054.7_1_2:230127567-230135921:-|nuORF	ENST00000392054.7_1_2:230127567-230135921:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	360.93634033203125	3	360.192845	1077.55671	-0.50447	-0.00018171	-0.011767	-4.2385E-06	-0.51624	-0.00018594	360.192851266241	19.778	0.4032	20.388	20.146	20.549	0.61029					11	7	2	0	0	0	0.972	1	6034	6034		10.074	2.465	1	892380			53338	11413	38766	39077	52087	52087					0.02103073186435722
TERNRDIIR	9	Unmodified	_TERNRDIIR_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;HECTD4|p.T2131Nfs*17|1|0.26|ENSG00000173064|chr12:112228151-112228152|-/G|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;nc|ENSG00000173064|Q9Y4D8-5|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;ENST00000311694.7_1_12:112687934-112711582:-|nuORF;nc|ENSG00000173064|Q9Y4D8-3|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-SECPEP	A375_MHC_IP_R2	2	390.9402160644531	3	391.554666	1171.64217	-0.48046	-0.00018813	0.96062	0.00037613	0.48016	0.00018801	391.55556116860413	19.695	0.65738	20.305	20.044	20.701	0.61029					15	12	2	0	0	0	0.78348	1	6032	6032		2.4985	0	1	671400			53339	7762	38767	39078	52088	52088					0.06321238372083826
TERNVEFFR	9	Unmodified	_TERNVEFFR_					0	0	0			REV__nc|ENSG00000240184|Q9UN70-2|PCDHGC3	REV__nc|ENSG00000240184|Q9UN70-2|PCDHGC3	MULTI-SECPEP	A375_MHC_IP_R2	2	400.27215576171875	3	399.871883	1196.59382	0.13521	5.4068E-05	-0.3136	-0.0001254	-0.17838	-7.133E-05	399.87182254857856	94.048	0.40318	94.793	94.566	94.969	0.74474					14	7	3	0	0	0	0.78353	1	35775	35775		6.1918	0	1	1478300	+		53340	22777	38768	39079	52089	52089					0.0033874473217565537
TERPEAEGER	10	Unmodified	_TERPEAEGER_					0	0	0			REV__ENST00000430430.5_1_8:81398575-81399061:+|nuORF	REV__ENST00000430430.5_1_8:81398575-81399061:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	391.63153076171875	3	391.854669	1172.54218	0.19889	7.7934E-05	2.3232	0.00091037	2.5221	0.00098831	392.1902225147655	35.01	0.25485	35.01	34.861	35.116	0					6	4	2	0	0	0	0.94102	1	11601	11601		0.094841	0	1	1208900	+		53341	24692	38769	39080	52090	52090					-0.03719043752403195
TERQRLQYLAF	11	Unmodified	_TERQRLQYLAF_					0	0	0		ENSG00000111110|ENST00000228705|PPM1H	ENSG00000111110|ENST00000228705|PPM1H	ENSG00000111110|ENST00000228705|PPM1H	MSMS	A375_MHC_IP_R1	1	712.9443969726562	2	712.885875	1423.7572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.8	1	102.8	102.3	103.3	0								0	0	0	0.16302	1	37780	37780		2.9952	1.3426	1				53342	2965	38770	39081	52091	52091					0.062269227832530305
TERRHFLHG	9	Unmodified	_TERRHFLHG_					0	0	0			REV__ENST00000261584.8_2_16:23647337-23647469:-|nuORF	REV__ENST00000261584.8_2_16:23647337-23647469:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	577.1696166992188	2	576.804688	1151.59482	-0.32259	-0.00018607	2.0408	0.0011772	1.7183	0.0009911	576.8056561423074	46.868	0.66676	46.868	46.596	47.263	0					19	11	2	0	0	0	0.61452	1	16611	16611		21.747	10.923	1	2979300	+		53343	23192	38771	39082	52092	52092					0.025090038917369384
TERRRQRPW	9	Unmodified	_TERRRQRPW_					0	0	0		ENST00000291560.6_1_21:45076563-45078105:-|nuORF	ENST00000291560.6_1_21:45076563-45078105:-|nuORF	ENST00000291560.6_1_21:45076563-45078105:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	428.6381530761719	3	428.905921	1283.69593	-0.48252	-0.00020696	3.6522	0.0015665	3.1697	0.0013595	428.90787860094696	24.238	0.25327	24.882	24.705	24.958	0.64368					8	4	2	0	0	0	0.77003	1	7955	7955		4.5289	2.0941	1	1835600			53344	10475	38772	39083	52093	52093					0.06543455594464831
TERRVRTWF	9	Unmodified	_TERRVRTWF_					0	0	0			REV__ENST00000531174.1_1_11:64813610-64815186:-|nuORF	REV__ENST00000531174.1_1_11:64813610-64815186:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	417.2944030761719	3	417.563273	1249.66799	-0.36157	-0.00015098	0.29254	0.00012215	-0.069033	-2.8826E-05	417.56336244125583	20.237	1.1664	20.847	20.044	21.21	0.61029					26	22	2	0	0	0	0.78351	1	6007	6007		1.0715	1.0715	1	981690	+		53345	25848	38773	39084	52094	52094					0.05314132614353184
TERRYLLF	8	Unmodified	_TERRYLLF_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.L6015F|1|0.22|ENSG00000164199|chr5:90985413-90985413|C/T|missense_variant;nc|ENSG00000164199|Q8WXG9-2|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	A375_MHC_IP_R1	1	549.1328125	2	549.308741	1096.60293	-0.53908	-0.00029612	-0.35578	-0.00019544	-0.89487	-0.00049156	549.3085162438515	50.704	0.45585	50.704	50.459	50.915	0					10	8	2	0	0	0	0.972	1	17993	17993		4.756	0	1	1013900			53346	6801	38774	39085	52095	52095					0.05849138088501604
TERVFQDRQY	10	Unmodified	_TERVFQDRQY_					0	0	0		nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000139842|Q13619-2|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	MULTI-SECPEP	A375_MHC_IP_R1	1	448.2867431640625	3	447.889714	1340.64731	-0.22618	-0.00010131	-1.1328	-0.00050735	-1.3589	-0.00060866	447.88917019165007	27.659	0.55583	27.659	27.381	27.937	0					25	10	3	0	0	0	0.021825	1	8398	8398		117.8	91.68	1	9055900			53347	5114	38775	39086	52096	52096					-0.009385025559595306
TERVFQDRQY	10	Unmodified	_TERVFQDRQY_					0	0	0		nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000139842|Q13619-2|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	MULTI-SECPEP	A375_MHC_IP_R2	2	448.2885437011719	3	447.889714	1340.64731	-0.46175	-0.00020681	-0.97897	-0.00043847	-1.4407	-0.00064528	447.8893192724496	26.986	0.51269	27.646	27.414	27.927	0.65992					25	9	3	0	0	0	0.026141	1	9186	9186		108.77	87.527	1	9336000			53348	5114	38775	39086	52097	52097					-0.009385025559595306
TERVRREEE	9	Unmodified	_TERVRREEE_					0	0	0			REV__ENSG00000225921|ENST00000451315|NOL7	REV__ENSG00000225921|ENST00000451315|NOL7	MULTI-SECPEP	A375_MHC_IP_R2	2	602.2481079101562	2	602.307458	1202.60036	-0.68277	-0.00041124	2.127	0.0012811	1.4442	0.00086988	602.8096955552217	51.503	0.55807	52.255	51.966	52.524	0.75225					25	10	4	0	0	0	0.75164	1	19308	19308		5.7319	0	1	3844000	+		53349	22718	38776	39087	52098	52098					0.007166378929241546
TESCATNVRGY	11	Unmodified	_TESCATNVRGY_					0	0	0			REV__ENST00000381571.5_1_4:47453577-47453661:-|nuORF	REV__ENST00000381571.5_1_4:47453577-47453661:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	601.6677856445312	2	600.769319	1199.52409	-0.31276	-0.0001879	-3.829	-0.0023003	-4.1418	-0.0024882	600.7665012521825	54.681	0.66077	54.681	54.263	54.924	0					17	12	2	0	0	0	0.7039	1	19538	19538		15.248	5.0979	1	2398900	+		53350	24236	38777	39088	52099	52099					-0.06769501998724081
TESCATNVRGY	11	Unmodified	_TESCATNVRGY_					0	0	0			REV__ENST00000381571.5_1_4:47453577-47453661:-|nuORF	REV__ENST00000381571.5_1_4:47453577-47453661:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	601.16650390625	2	600.769319	1199.52409	-0.91376	-0.00054896	-3.8985	-0.0023421	-4.8122	-0.002891	600.7661236027249	53.884	0.51339	54.635	54.301	54.815	0.75105					15	9	2	0	0	0	0.49816	1	20374	20374		31.268	5.0002	1	2296700	+		53351	24236	38777	39088	52100	52100					-0.06769501998724081
TESCATNVRGY	11	Unmodified	_TESCATNVRGY_					0	0	0			REV__ENST00000381571.5_1_4:47453577-47453661:-|nuORF	REV__ENST00000381571.5_1_4:47453577-47453661:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	600.769319	1199.52409	-0.31276	-0.0001879	-3.829	-0.0023003	-4.1418	-0.0024882	600.7665012521825	54.681	0.66077	54.681	54.263	54.924	0	0.023336	4.6156E-05	NaN	31.268	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2398900	+		53352	24236	38777	39088							-0.06769501998724081
TESCATNVRGY	11	Unmodified	_TESCATNVRGY_					0	0	0			REV__ENST00000381571.5_1_4:47453577-47453661:-|nuORF	REV__ENST00000381571.5_1_4:47453577-47453661:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	600.769319	1199.52409	-0.91376	-0.00054896	-3.8985	-0.0023421	-4.8122	-0.002891	600.7661236027249	53.884	0.51339	54.635	54.301	54.815	0.75105	-0.023336	-3.7299E-05	NaN	31.268	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2296700	+		53353	24236	38777	39088							-0.06769501998724081
TESDIHLTTL	10	Unmodified	_TESDIHLTTL_					0	0	0			REV__ENSG00000174373|ENST00000680220|RALGAPA1;REV__ENST00000443361.1_1_9:108285096-108287232:+|nuORF	REV__ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-SECPEP	A375_MHC_IP_R2	2	376.93292236328125	3	377.196033	1128.56627	-0.0087318	-3.2936E-06	-1.0489	-0.00039564	-1.0576	-0.00039894	377.195323200833	34.825	0.45367	35.588	35.375	35.829	0.76338					10	8	2	0	0	0	0.94163	1	12531	12531		3.5871	0	1	477420	+		53354	21281;24826	38778	39089	52101	52101					0.007127966812731756
TESEMMQCL	9	Unmodified	_TESEMMQCL_					0	0	0		nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A	nc|ENSG00000139116|Q7Z4S6-6|KIF21A	nc|ENSG00000139116|Q7Z4S6-6|KIF21A	MULTI-SECPEP	A375_MHC_IP_R2	2	536.5647583007812	2	536.211403	1070.40825	-0.75891	-0.00040693	-1.5348	-0.00082298	-2.2937	-0.0012299	536.211579609252	79.208	0.25155	79.952	79.796	80.047	0.74474					7	4	2	0	0	0	0.78348	1	30058	30058		1.8442	1.4435	1	1138500			53355	5048	38779	39090	52102	52102					-0.12413485165438942
TESEPWLKP	9	Unmodified	_TESEPWLKP_					0	0	0			REV__nc|ENSG00000196118|A1A4V9-3|CFAP119	REV__nc|ENSG00000196118|A1A4V9-3|CFAP119	MULTI-SECPEP	A375_MHC_IP_R1	1	363.6095275878906	3	362.853718	1085.53933	0.25991	9.4309E-05	0.60315	0.00021885	0.86306	0.00031316	362.85393341479465	55.979	0.40493	55.979	55.738	56.143	0					12	7	2	0	0	0	0.69504	1	19967	19967		12.241	0	1	1343400	+		53356	22160	38780	39091	52103	52103					-2.2671392343909247E-05
TESHHLHLYMP	11	Unmodified	_TESHHLHLYMP_					0	0	0		ENSG00000006071|ENST00000389817|ABCC8;nc|ENSG00000006071|Q09428-2|ABCC8	ENSG00000006071|ENST00000389817|ABCC8	ENSG00000006071|ENST00000389817|ABCC8	MSMS	A375_MHC_IP_R1	1	455.6067199707031	3	455.552045	1363.63431	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.709	1	23.709	23.209	24.209	0								0	0	0	0.16172	1	6568	6568		9.7643	1.0125	1				53357	907	38781	39092	52104	52104					-0.032966569396876366
TESHSPPWP	9	Unmodified	_TESHSPPWP_					0	0	0			REV__ENST00000522443.1_7:102249007-102257136:-|nuORF	REV__ENST00000522443.1_7:102249007-102257136:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1693725585938	2	519.237981	1036.46141	0.019598	1.0176E-05	-1.155	-0.00059971	-1.1354	-0.00058954	519.2373407685081	44.875	0.76208	44.875	44.37	45.132	0					25	14	2	0	0	0	0.69504	1	15532	15532		1.8442	0	1	1728400	+		53358	25731	38782	39093	52105	52105					-0.05536280004616856
TESIIRKEIA	10	Unmodified	_TESIIRKEIA_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	A375_MHC_IP_R1	1	580.705322265625	2	580.337695	1158.66084	-0.45643	-0.00026489	0.63716	0.00036977	0.18073	0.00010488	580.3381221126616	132.85	1.0712	132.85	132.23	133.3	0					34	20	2	0	0	0	0.93799	1	51363	51363		1.4819	0.15237	1	2013800	+		53359	18428	38783	39094	52106	52106					0.08785355223290026
TESITQWKL	9	Unmodified	_TESITQWKL_					0	0	0			REV__ENST00000496116.1_1_3:99536761-99742280:+|nuORF	REV__ENST00000496116.1_1_3:99536761-99742280:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	368.6964416503906	3	369.201118	1104.58152	-0.35332	-0.00013045	0.51724	0.00019096	0.16392	6.052E-05	369.53592014393473	28.686	0.25029	29.384	29.283	29.534	0.69872					5	4	2	0	0	0	0.76187	1	9946	9946		4.5289	0	1	3346300	+		53360	25454	38784	39095	52107	52107					0.03341708269135779
TESKEHSTESI	11	Unmodified	_TESKEHSTESI_					0	0	0			REV__ENSG00000258890|ENST00000556440|CEP95	REV__ENSG00000258890|ENST00000556440|CEP95	MSMS	A375_MHC_IP_R1	1	416.4305419921875	3	416.529851	1246.56773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.713	1	37.713	37.213	38.213	0								0	0	0	0.16249	1	12732	12732		2.6312	0	1		+		53361	22900	38785	39096	52108	52108					-0.045696140206018754
TESLIALY	8	Unmodified	_TESLIALY_					0	0	0			REV__nc|ENSG00000140265|Q8IWY8-3|ZSCAN29	REV__nc|ENSG00000140265|Q8IWY8-3|ZSCAN29	MSMS	A375_MHC_IP_R1	1	455.6273498535156	2	455.250026	908.485499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.414	1	24.414	23.914	24.914	0								0	0	0	0.16876	1	6927	6927		9.3474	0	1		+		53362	27261	38786	39097	52109	52109					0.02759560429035446
TESMMWRVC	9	Unmodified	_TESMMWRVC_					0	0	0			REV__SNCAIP|p.V405M|1|0.15|ENSG00000064692|chr5:122431999-122431999|G/A|missense_variant	REV__SNCAIP|p.V405M|1|0.15|ENSG00000064692|chr5:122431999-122431999|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	571.7090454101562	2	571.743205	1141.47186	-0.59339	-0.00033927	-2.9094	-0.0016634	-3.5028	-0.0020027	572.2424841975563	38.143	0.30561	38.143	37.913	38.218	0					8	5	2	0	0	0	0.77834	1	12813	12813		2.0598	0.40713	1	785270	+		53363	28020	38787	39098	52110	52110					-0.09322079937692251
TESPEYREIL	10	Unmodified	_TESPEYREIL_					0	0	0			REV__ENSG00000187091|ENST00000334661|PLCD1	REV__ENSG00000187091|ENST00000334661|PLCD1	MULTI-MSMS	A375_MHC_IP_R1	1	619.2109375	2	618.808968	1235.60338	-0.3893	-0.0002409	1.5159	0.00093805	1.1266	0.00069715	618.8099518429266	50.394	0.51156	50.394	50.049	50.561	0					16	9	2	0	0	0	0.69833	1	17886	17886		13.042	0	1	1472700	+		53364	22007	38788	39099	52111	52111					-0.00499531772948103
TESPEYREIL	10	Unmodified	_TESPEYREIL_					0	0	0			REV__ENSG00000187091|ENST00000334661|PLCD1	REV__ENSG00000187091|ENST00000334661|PLCD1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	618.808968	1235.60338	-0.3893	-0.0002409	1.5159	0.00093805	1.1266	0.00069715	618.8099518429266	50.394	0.51156	50.394	50.049	50.561	0	0.085109	0.00022211	NaN	13.042	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1472700	+		53365	22007	38788	39099							-0.00499531772948103
TESPTNPQF	9	Unmodified	_TESPTNPQF_					0	0	0		ENSG00000047346|ENST00000619572|ATOSA;nc|ENSG00000047346|Q32MH5-3|ATOSA;ENST00000534964.6_1_15:52874353-52879255:-|nuORF;ENST00000568871.1_1_15:52874353-52877153:-|nuORF	ENSG00000047346|ENST00000619572|ATOSA	ENSG00000047346|ENST00000619572|ATOSA	MULTI-MSMS	A375_MHC_IP_R1	1	510.68426513671875	2	510.735271	1019.45599	-0.61064	-0.00031187	0.1949	9.9541E-05	-0.41574	-0.00021233	510.7352847754144	46.883	0.512	46.883	46.647	47.159	0					22	9	3	0	0	0	0.12771	1	16433	16433		45.7	18.816	1	4248700			53366	1198	38789	39100	52112	52112					-0.05296003587091036
TESPTNPQF	9	Unmodified	_TESPTNPQF_					0	0	0		ENSG00000047346|ENST00000619572|ATOSA;nc|ENSG00000047346|Q32MH5-3|ATOSA;ENST00000534964.6_1_15:52874353-52879255:-|nuORF;ENST00000568871.1_1_15:52874353-52877153:-|nuORF	ENSG00000047346|ENST00000619572|ATOSA	ENSG00000047346|ENST00000619572|ATOSA	MULTI-SECPEP	A375_MHC_IP_R2	2	511.1345520019531	2	510.735271	1019.45599	-0.65105	-0.00033251	0.1724	8.8049E-05	-0.47865	-0.00024446	510.735172971326	46.259	0.81279	47.025	46.704	47.517	0.76519					28	15	3	0	0	0	0.05217	1	17317	17317		79.596	37.757	1	3552200			53367	1198	38789	39100	52113	52113					-0.05296003587091036
TESQQIRYF	9	Unmodified	_TESQQIRYF_					0	0	0		nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3	nc|ENSG00000133657|Q9H7F0|ATP13A3	nc|ENSG00000133657|Q9H7F0|ATP13A3	MULTI-SECPEP	A375_MHC_IP_R1	1	586.6905517578125	2	586.290745	1170.56694	-0.029612	-1.7361E-05	-0.36654	-0.0002149	-0.39615	-0.00023226	586.2904208646435	49.821	0.50863	49.821	49.49	49.998	0					16	9	3	0	0	0	0.011143	1	17620	17620		114.19	62.557	1	2101700			53368	4521	38790	39101	52114	52114					-0.011523638790094992
TESQQIRYF	9	Unmodified	_TESQQIRYF_					0	0	0		nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3	nc|ENSG00000133657|Q9H7F0|ATP13A3	nc|ENSG00000133657|Q9H7F0|ATP13A3	MULTI-SECPEP	A375_MHC_IP_R2	2	586.6904296875	2	586.290745	1170.56694	-0.70187	-0.0004115	0.23303	0.00013662	-0.46885	-0.00027488	586.2906876075972	49.076	0.71163	49.833	49.434	50.145	0.75737					17	13	2	0	0	0	0.013591	1	18407	18407		118.07	64.236	1	2424000			53369	4521	38790	39101	52115	52115					-0.011523638790094992
TESQVVITL	9	Unmodified	_TESQVVITL_					0	0	0		ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1;ENST00000379452.3_1_3:32794544-32794889:+|nuORF	ENSG00000165416|ENST00000310528|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	MULTI-MSMS	A375_MHC_IP_R2	2	990.64306640625	1	989.551353	988.544076	0.096423	9.5416E-05	-1.3749	-0.0013605	-1.2785	-0.0012651	989.5498479288864	91.351	0.50716	92.085	91.818	92.325	0.7345					16	9	2	0	0	0	0.2487	1	34788	34788		34.402	9.0024	1	3209600			53370	6949	38791	39102	52116	52116					0.04934617003527819
TESQVVITL	9	Unmodified	_TESQVVITL_					0	0	0		ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1;ENST00000379452.3_1_3:32794544-32794889:+|nuORF	ENSG00000165416|ENST00000310528|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	MULTI-MATCH	A375_MHC_IP_R1	1		1	989.551353	988.544076	0.34137	0.0003378	-2.0397	-0.0020184	-1.6984	-0.0016806	989.5490115240874	92.236	0.76067	92.236	91.857	92.617	0	0.075488	-0.0004381	NaN	34.402	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3520800			53371	6949	38791	39102							0.04934617003527819
TESTLQAERS	10	Unmodified	_TESTLQAERS_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	A375_MHC_IP_R2	2	560.6868286132812	2	561.275292	1120.53603	-0.97926	-0.00054963	-0.78059	-0.00043812	-1.7598	-0.00098776	561.2748955415674	52.13	0.55685	52.882	52.677	53.234	0.75225					17	10	2	0	0	0	0.70179	1	19575	19575		11.495	1.4208	1	3180800			53372	4476	38792	39103	52117	52117					-0.019415619839264764
TESYLRPLF	9	Unmodified	_TESYLRPLF_					0	0	0		ENSG00000165630|ENST00000378572|PRPF18	ENSG00000165630|ENST00000378572|PRPF18	ENSG00000165630|ENST00000378572|PRPF18	MULTI-SECPEP	A375_MHC_IP_R2	2	563.6693115234375	2	563.300581	1124.58661	-0.74367	-0.00041891	0.85395	0.00048103	0.11027	6.2116E-05	563.8025678923041	50.067	0.35622	50.821	50.599	50.955	0.75406					9	6	2	0	0	0	0.47368	1	18851	18851		20.454	0	1	645320			53373	6971	38793	39104	52118	52118					0.029300121317419325
TETALSEAFS	10	Unmodified	_TETALSEAFS_					0	0	0			REV__ENSG00000023516|ENST00000025301|AKAP11	REV__ENSG00000023516|ENST00000025301|AKAP11	MULTI-MSMS	A375_MHC_IP_R1	1	528.1979370117188	2	528.248212	1054.48187	-0.86173	-0.00045521	0.089777	4.7425E-05	-0.77195	-0.00040778	528.2483150056152	30.304	0.9086	30.304	29.949	30.857	0					37	17	3	0	0	0	0.60556	1	9553	9553		20.454	1.1966	1	20677000	+		53374	16279	38794	39105	52119	52119					-0.04319154135487224
TETDLRNHF	9	Unmodified	_TETDLRNHF_					0	0	0		ENSG00000086589|ENST00000199814|RBM22;nc|ENSG00000086589|Q9NW64-2|RBM22	ENSG00000086589|ENST00000199814|RBM22	ENSG00000086589|ENST00000199814|RBM22	MULTI-SECPEP	A375_MHC_IP_R1	1	378.584228515625	3	378.184238	1131.53089	0.090702	3.4302E-05	-0.11733	-4.4373E-05	-0.026631	-1.0071E-05	378.1840777192358	28.991	0.45687	28.991	28.795	29.252	0					13	8	2	0	0	0	0.3213	1	9040	9040		41.956	20.156	1	3213900			53375	1839	38795	39106	52120	52120					-0.0296182105587377
TETDLRNHF	9	Unmodified	_TETDLRNHF_					0	0	0		ENSG00000086589|ENST00000199814|RBM22;nc|ENSG00000086589|Q9NW64-2|RBM22	ENSG00000086589|ENST00000199814|RBM22	ENSG00000086589|ENST00000199814|RBM22	MULTI-SECPEP	A375_MHC_IP_R2	2	378.58416748046875	3	378.184238	1131.53089	-0.20211	-7.6436E-05	-0.15865	-5.9998E-05	-0.36076	-0.00013643	378.1840653349309	28.293	0.40624	28.971	28.757	29.163	0.67857					11	7	2	0	0	0	0.49205	1	9788	9788		26.021	7.2995	1	4073400			53376	1839	38795	39106	52121	52121					-0.0296182105587377
TETDLRNHFY	10	Unmodified	_TETDLRNHFY_					0	0	0		ENSG00000086589|ENST00000199814|RBM22;nc|ENSG00000086589|Q9NW64-2|RBM22	ENSG00000086589|ENST00000199814|RBM22	ENSG00000086589|ENST00000199814|RBM22	MULTI-SECPEP	A375_MHC_IP_R1	1	432.9387512207031	3	432.538681	1294.59421	-0.051103	-2.2104E-05	-0.011743	-5.0792E-06	-0.062846	-2.7183E-05	432.5386520377595	39.305	0.50794	39.305	39.033	39.541	0					28	9	4	0	0	0	0.12766	1	13403	13403		68.76	49.134	1	9235800			53377	1839	38796	39107	52122	52122					-0.041298803386325744
TETDLRNHFY	10	Unmodified	_TETDLRNHFY_					0	0	0		ENSG00000086589|ENST00000199814|RBM22;nc|ENSG00000086589|Q9NW64-2|RBM22	ENSG00000086589|ENST00000199814|RBM22	ENSG00000086589|ENST00000199814|RBM22	MULTI-SECPEP	A375_MHC_IP_R1	1	648.7042236328125	2	648.304384	1294.59421	-0.21142	-0.00013706	-0.26977	-0.00017489	-0.48119	-0.00031196	648.3044189415438	39.293	0.35634	39.293	39.085	39.441	0					13	6	3	0	0	0	0.24721	1	13458	13458		65.474	48.031	1	2321900			53378	1839	38796	39107	52123	52123					-0.041298803386325744
TETDLRNHFY	10	Unmodified	_TETDLRNHFY_					0	0	0		ENSG00000086589|ENST00000199814|RBM22;nc|ENSG00000086589|Q9NW64-2|RBM22	ENSG00000086589|ENST00000199814|RBM22	ENSG00000086589|ENST00000199814|RBM22	MULTI-SECPEP	A375_MHC_IP_R2	2	432.93829345703125	3	432.538681	1294.59421	-0.60708	-0.00026259	0.071343	3.0859E-05	-0.53574	-0.00023173	432.5386732681605	38.576	0.55956	39.35	39.098	39.658	0.77451					24	10	3	0	0	0	0.066228	1	14185	14185		72.59	51.718	1	8720900			53379	1839	38796	39107	52124	52124					-0.041298803386325744
TETDLRNHFY	10	Unmodified	_TETDLRNHFY_					0	0	0		ENSG00000086589|ENST00000199814|RBM22;nc|ENSG00000086589|Q9NW64-2|RBM22	ENSG00000086589|ENST00000199814|RBM22	ENSG00000086589|ENST00000199814|RBM22	MULTI-MATCH	A375_MHC_IP_R2	2		2	648.304384	1294.59421	-1.0505	-0.00068105	-0.11656	-7.5565E-05	-1.1671	-0.00075661	648.3043713854335	38.574	0.35545	39.349	39.149	39.504	0.77451	0.027693	0.00014828	NaN	65.474	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2153500			53380	1839	38796	39107							-0.041298803386325744
TETELAQRL	9	Unmodified	_TETELAQRL_					0	0	0		ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	MULTI-SECPEP	A375_MHC_IP_R1	1	530.7186279296875	2	530.785296	1059.55604	-0.58203	-0.00030893	0.10409	5.5251E-05	-0.47794	-0.00025368	530.7851108855806	42.04	0.50762	42.04	41.828	42.336	0					15	9	2	0	0	0	0.49205	1	14595	14595		34.402	5.3201	1	2180900			53381	5423	38797	39108	52125	52125					0.028642337467317702
TETELAQRL	9	Unmodified	_TETELAQRL_					0	0	0		ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	MULTI-MSMS	A375_MHC_IP_R2	2	530.718505859375	2	530.785296	1059.55604	-0.82295	-0.00043681	0.38849	0.0002062	-0.43446	-0.00023061	530.7852739056407	41.299	0.40496	42.073	41.895	42.3	0.77451					12	7	2	0	0	0	0.55471	1	15264	15264		17.113	4.0704	1	1883100			53382	5423	38797	39108	52126	52126					0.028642337467317702
TETELAQRL	9	Unmodified	_TETELAQRL_					0	0	0		ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	530.785296	1059.55604	-0.82295	-0.00043681	0.38849	0.0002062	-0.43446	-0.00023061	530.7852739056407	41.299	0.40496	42.073	41.895	42.3	0.77451	0.016332	0.00015094	NaN	34.402	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1883100			53383	5423	38797	39108							0.028642337467317702
TETELTKPNY	10	Unmodified	_TETELTKPNY_					0	0	0		ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-SECPEP	A375_MHC_IP_R1	1	598.6951293945312	2	598.295693	1194.57683	-0.38328	-0.00022932	0.095925	5.7391E-05	-0.28736	-0.00017192	598.2957135506864	33.438	0.50732	33.438	33.241	33.748	0					21	9	3	0	0	0	0.026214	1	10922	10922		106.94	35.018	1	5219100			53384	5567	38798	39109	52127	52127					-0.012672206642719175
TETELTKPNY	10	Unmodified	_TETELTKPNY_					0	0	0		ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-SECPEP	A375_MHC_IP_R2	2	598.6954956054688	2	598.295693	1194.57683	-0.61858	-0.0003701	1.1246	0.00067283	0.50599	0.00030273	598.2965428742331	32.829	0.5591	33.566	33.317	33.876	0.73692					24	10	3	0	0	0	0.022992	1	11716	11716		103.42	63.47	1	4694100			53385	5567	38798	39109	52128	52128					-0.012672206642719175
TETEMEQWL	9	Unmodified	_TETEMEQWL_					0	0	0			REV__chr14:55782581-55793368|302|16.84|0.04|8.61|-|0|LINC00520,LINC00520|2	REV__chr14:55782581-55793368|302|16.84|0.04|8.61|-|0|LINC00520,LINC00520|2	MULTI-SECPEP	A375_MHC_IP_R1	1	583.403564453125	2	583.755346	1165.49614	0.15765	9.2026E-05	-0.89372	-0.00052171	-0.73607	-0.00042969	584.2564193103372	22.497	0.45658	22.497	22.267	22.723	0					13	8	2	0	0	0	0.79191	1	6075	6075		6.7232	0.51738	1	597150	+		53386	15707	38799	39110	52129	52129					-0.0799882497881299
TETEPYHNY	9	Unmodified	_TETEPYHNY_					0	0	0		ENSG00000158545|ENST00000301011|ZC3H18;ENST00000568072.1_1_16:88666261-88675531:+|nuORF	ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	MULTI-MSMS	A375_MHC_IP_R1	1	577.6425170898438	2	577.24346	1152.47237	-0.32385	-0.00018694	-0.55275	-0.00031907	-0.8766	-0.00050601	577.2431899246205	25.689	0.35538	25.689	25.511	25.866	0					13	6	3	0	0	0	0.047602	1	7560	7560		65.235	29.108	1	2834800			53387	6311	38800	39111	52130	52130					-0.09776922420996925
TETEPYHNY	9	Unmodified	_TETEPYHNY_					0	0	0		ENSG00000158545|ENST00000301011|ZC3H18;ENST00000568072.1_1_16:88666261-88675531:+|nuORF	ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	MULTI-MSMS	A375_MHC_IP_R2	2	577.64306640625	2	577.24346	1152.47237	-0.59627	-0.00034419	-0.31239	-0.00018033	-0.90866	-0.00052452	577.2432577621656	25.152	0.40931	25.795	25.668	26.078	0.64368					10	7	2	0	0	0	0.22528	1	8411	8411		36.127	19.014	1	3450500			53388	6311	38800	39111	52131	52131					-0.09776922420996925
TETETIAKY	9	Unmodified	_TETETIAKY_					0	0	0		nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	MULTI-SECPEP	A375_MHC_IP_R1	1	528.1979370117188	2	528.266404	1054.51826	-0.86734	-0.00045818	0.096766	5.1118E-05	-0.77057	-0.00040707	528.2663345967898	30.18	0.45375	30.18	29.999	30.453	0					20	8	3	0	0	0	0.13208	1	9553	9553		66.457	10.28	1	23749000			53389	3816	38801	39112	52132	52132					-0.006822772387522491
TETETIAKY	9	Unmodified	_TETETIAKY_					0	0	0		nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	MULTI-SECPEP	A375_MHC_IP_R2	2	528.6477661132812	2	528.266404	1054.51826	-1.1579	-0.00061169	0.41579	0.00021965	-0.74213	-0.00039204	528.2664897027931	29.527	0.55616	30.225	30.032	30.588	0.69872					27	10	3	0	0	0	0.27742	1	10360	10360		51.63	32.373	1	13245000			53390	3816	38801	39112	52133	52133					-0.006822772387522491
TETGPPIL	8	Unmodified	_TETGPPIL_					0	0	0			REV__ENST00000381719.7_1_20:1356178-1356241:-|nuORF	REV__ENST00000381719.7_1_20:1356178-1356241:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	413.6268615722656	2	414.229094	826.443634	-0.024382	-1.01E-05	0.73546	0.00030465	0.71108	0.00029455	414.22916769992565	30.962	0.25306	31.68	31.517	31.77	0.71857					7	4	2	0	0	0	0.972	1	10923	10923		5.7604	0	1	1121500	+		53391	24239	38802	39113	52134	52134					0.023470047405339756
TETGSVFAF	9	Unmodified	_TETGSVFAF_					0	0	0		ENSG00000179051|ENST00000375436|RCC2;RCC2|p.G253Afs*15|1|0.1|ENSG00000179051|chr1:17420815-17420815|C/-|frameshift_variant;ENST00000526625.2_1_11:62139723-62139795:+|nuORF	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-SECPEP	A375_MHC_IP_R2	2	958.852294921875	1	958.451639	957.444362	-0.10402	-9.9696E-05	-0.59506	-0.00057034	-0.69908	-0.00067004	958.4511044401405	103.15	0.76431	103.91	103.53	104.3	0.76428					24	14	2	0	0	0	0.040439	1	38988	38988		92.822	69.674	1	9059800			53392	8201	38803	39114	52135	52135					-0.036062006104316424
TETGSVFAF	9	Unmodified	_TETGSVFAF_					0	0	0		ENSG00000179051|ENST00000375436|RCC2;RCC2|p.G253Afs*15|1|0.1|ENSG00000179051|chr1:17420815-17420815|C/-|frameshift_variant;ENST00000526625.2_1_11:62139723-62139795:+|nuORF	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-MATCH	A375_MHC_IP_R1	1		1	958.451639	957.444362	0.094856	9.0915E-05	0.19161	0.00018364	0.28646	0.00027456	958.451699768608	104.02	0.71294	104.02	103.68	104.39	0	0.054854	0.00048615	NaN	92.822	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9214500			53393	8201	38803	39114							-0.036062006104316424
TETIVNLERLY	11	Unmodified	_TETIVNLERLY_					0	0	0			REV__ENST00000464779.1_1_6:170117898-170118989:-|nuORF	REV__ENST00000464779.1_1_6:170117898-170118989:-|nuORF	MSMS	A375_MHC_IP_R2	2	450.97686767578125	3	450.913637	1349.71908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.673	1	23.303	22.803	23.803	0.63014								0	0	0	0.1624	1	7216	7216		6.2344	3.6031	1		+		53394	18515	38804	39115	52136	52136					0.058209920779063395
TETKKLQVAR	10	Unmodified	_TETKKLQVAR_					0	0	0			REV__ENST00000376681.7_1_17:46840236-46881289:-|nuORF	REV__ENST00000376681.7_1_17:46840236-46881289:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	587.7507934570312	2	587.351137	1172.68772	-0.57734	-0.0003391	-0.73847	-0.00043374	-1.3158	-0.00077285	587.3507094126988	75.555	0.40965	76.295	76.078	76.487	0.74052					16	7	3	0	0	0	0.93405	1	28683	28683		1.0715	0	1	3241900	+		53395	21014	38805	39116	52137	52137					0.10828463834445756
TETNLADDFF	10	Unmodified	_TETNLADDFF_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-MSMS	A375_MHC_IP_R1	1	587.247802734375	2	586.758943	1171.50333	-0.4184	-0.0002455	0.35677	0.00020934	-0.061628	-3.6161E-05	586.7591268939603	65.896	0.60865	65.896	65.514	66.122	0					19	11	2	0	0	0	0.70496	1	23754	23754		10.074	1.4806	1	3287100			53396	2650	38806	39117	52138	52138					-0.07555769106761545
TETNVYFKL	9	Unmodified	_TETNVYFKL_					0	0	0		nc|ENSG00000130810|Q9NQ55-3|PPAN;nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN	nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-3|PPAN	MULTI-SECPEP	A375_MHC_IP_R2	2	558.1799926757812	2	557.792589	1113.57063	-0.76503	-0.00042673	1.0861	0.00060583	0.3211	0.0001791	557.7932277852063	74.426	0.81414	75.163	74.501	75.315	0.73751					22	15	3	0	0	0	0.41434	1	28287	28287		26.268	20.536	1	1462000			53397	14602	38807	39118	52139	52139					0.01838305894852965
TETPENGSKW	10	Unmodified	_TETPENGSKW_					0	0	0		ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96	ENSG00000153283|ENST00000352690|CD96	ENSG00000153283|ENST00000352690|CD96	MULTI-SECPEP	A375_MHC_IP_R1	1	575.1642456054688	2	574.76456	1147.51457	-0.52695	-0.00030287	-0.075713	-4.3517E-05	-0.60266	-0.00034639	574.7644584587583	26.601	0.65472	26.601	26.373	27.027	0					34	12	4	0	0	0	0.028861	1	7932	7932		135.72	135.72	1	48891000			53398	6023	38808	39119	52140	52140					-0.05328947012617391
TETPENGSKW	10	Unmodified	_TETPENGSKW_					0	0	0		ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96	ENSG00000153283|ENST00000352690|CD96	ENSG00000153283|ENST00000352690|CD96	MULTI-SECPEP	A375_MHC_IP_R2	2	575.1640625	2	574.76456	1147.51457	-0.63389	-0.00036434	0.064923	3.7315E-05	-0.56897	-0.00032702	574.7645522211338	26.063	0.60928	26.723	26.5	27.109	0.65992					36	11	4	0	0	0	0.028861	1	8756	8756		135.72	135.72	1	41389000			53399	6023	38808	39119	52141	52141					-0.05328947012617391
TETPSWPTPDA	11	Unmodified	_TETPSWPTPDA_					0	0	0		RBP3|p.A400T|1|0.33|ENSG00000265203|chr10:47349682-47349682|G/A|missense_variant	RBP3|p.A400T|1|0.33|ENSG00000265203|chr10:47349682-47349682|G/A|missense_variant	RBP3|p.A400T|1|0.33|ENSG00000265203|chr10:47349682-47349682|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	602.1738891601562	2	601.272218	1200.52988	-0.28931	-0.00017395	0.027784	1.6706E-05	-0.26152	-0.00015725	601.2721709379141	28.573	0.70859	28.573	28.339	29.047	0					36	13	4	0	0	0	0.72949	1	8976	8976		9.3831	0.63772	1	37763000			53400	15273	38809	39120	52142	52142					-0.0623608021542168
TETPSYLS	8	Unmodified	_TETPSYLS_					0	0	0			REV__ENSG00000164061|ENST00000296452|BSN	REV__ENSG00000164061|ENST00000296452|BSN	MSMS	A375_MHC_IP_R1	1	449.6123046875	2	449.21364	896.412728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.04	1	101.04	100.54	101.54	0								0	0	0	0.16876	1	37139	37139		5.7604	0.52976	1		+		53401	20443	38810	39121	52143	52143					-0.03962193364372979
TETRPYSI	8	Unmodified	_TETRPYSI_					0	0	0			REV__TOP3A|p.N830Tfs*52|1|0.27|ENSG00000177302|chr17:18278015-18278015|G/-|frameshift_variant;REV__nc|ENSG00000100038|O95985-3|TOP3B	REV__TOP3A|p.N830Tfs*52|1|0.27|ENSG00000177302|chr17:18278015-18278015|G/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	483.98382568359375	2	483.748182	965.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.058	1	89.79	89.29	90.29	0.7318								0	0	0	0.16876	1	33895	33895		13.508	0.97634	1		+		53402	21452;17044	38811	39122	52144	52144					-0.002311093448156498
TETSIAKEL	9	Unmodified	_TETSIAKEL_					0	0	0		ENSG00000115464|ENST00000398571|USP34;nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34	ENSG00000115464|ENST00000398571|USP34	ENSG00000115464|ENST00000398571|USP34	MULTI-MSMS	A375_MHC_IP_R1	1	496.6686096191406	2	496.268947	990.523341	-0.35028	-0.00017383	0.082993	4.1187E-05	-0.26729	-0.00013265	496.268911276942	40.329	0.71326	40.329	39.999	40.712	0					33	13	4	0	0	0	0.0095341	1	13817	13817		96.936	10.604	1	20512000			53403	3311	38812	39123	52145	52145					0.02770026623841204
TETSVRVKF	9	Unmodified	_TETSVRVKF_					0	0	0			REV__ENST00000526246.5_1_11:66099749-66102792:-|nuORF	REV__ENST00000526246.5_1_11:66099749-66102792:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	356.6012268066406	3	356.201229	1065.58186	-0.030222	-1.0765E-05	0.011765	4.1908E-06	-0.018456	-6.5742E-06	356.20121063738316	58.203	0.40462	58.203	57.923	58.328	0					14	7	2	0	0	0	0.75251	1	20909	20909		1.1933	0	1	2647600	+		53404	21299	38813	39124	52146	52146					0.051691279890064834
TETVPKELEK	10	Unmodified	_TETVPKELEK_					0	0	0		tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1	tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1	tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	391.26171875	3	391.883566	1172.62887	-0.54995	-0.00021552	1.7193	0.00067378	1.1694	0.00045826	391.8835581594694	24.672	0.3545	25.316	25.161	25.516	0.64368					9	6	2	0	0	0	0.83355	1	8078	8078		4.7159	0	1	1917200			53405	29943	38814	39125	52147	52147					0.049459427494639385
TEVALRTYE	9	Unmodified	_TEVALRTYE_					0	0	0			REV__ENSG00000196189|ENST00000368285|SEMA4A	REV__ENSG00000196189|ENST00000368285|SEMA4A	MULTI-MSMS	A375_MHC_IP_R2	2	542.178955078125	2	541.279846	1080.54514	-1.1533	-0.00062424	0.14762	7.9903E-05	-1.0056	-0.00054433	541.2801137352819	56.376	1.5812	57.126	56.337	57.918	0.75015					95	30	4	0	0	0	0.38603	1	21161	21161		25.399	1.3787	1	108810000	+		53406	22168	38815	39126	52148	52148					0.008088313724329055
TEVAQWLREN	10	Unmodified	_TEVAQWLREN_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1;GBF1|p.S825Ffs*10|1|0.56|ENSG00000107862|chr10:102367123-102367124|-/T|frameshift_variant	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-SECPEP	A375_MHC_IP_R1	1	416.2788391113281	3	415.878926	1244.61495	0.10168	4.2286E-05	-0.29059	-0.00012085	-0.18891	-7.8563E-05	415.87860778187184	24.322	0.50388	24.322	24.194	24.698	0					15	9	3	0	0	0	0.93232	1	6920	6920		7.4771	7.4771	1	3710800			53407	14531	38816	39127	52149	52149					0.0024271004106140026
TEVAQWLREN	10	Unmodified	_TEVAQWLREN_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1;GBF1|p.S825Ffs*10|1|0.56|ENSG00000107862|chr10:102367123-102367124|-/T|frameshift_variant	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MATCH	A375_MHC_IP_R2	2		3	415.878926	1244.61495	-0.30272	-0.0001259	0.064739	2.6923E-05	-0.23798	-9.8972E-05	415.8788048216882	23.58	0.30498	24.21	24.079	24.384	0.63015	-0.055912	0.00015092	NaN	7.4771	9	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2237100			53408	14531	38816	39127							0.0024271004106140026
TEVAYKMEL	9	Oxidation (M)	_TEVAYKM(Oxidation (M))EL_		TEVAYKM(1)EL		TEVAYKM(68)EL	0	0	1		ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT;ENST00000492459.1_1_1:231402025-231403654:+|nuORF	ENSG00000116906|ENST00000366647|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	MULTI-MSMS	A375_MHC_IP_R2	2	550.739013671875	2	550.270632	1098.52671	-1.2633	-0.00069514	0.64739	0.00035624	-0.61588	-0.0003389	550.2707243735734	37.171	0.66213	37.942	37.716	38.378	0.7709					22	12	2	0	0	0	0.04093	1	13732	13732		67.838	31.332	1	2984500			53409	3443	38817	39128	52150	52150		175			-0.018610465937854315
TEVAYKMEL	9	Unmodified	_TEVAYKMEL_					0	0	0		ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT;ENST00000492459.1_1_1:231402025-231403654:+|nuORF	ENSG00000116906|ENST00000366647|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	MULTI-SECPEP	A375_MHC_IP_R2	2	541.6437377929688	2	542.273175	1082.5318	-1.1471	-0.00062202	-0.022033	-1.1948E-05	-1.1691	-0.00063397	542.2729623567371	61.401	0.70477	62.146	61.769	62.473	0.74503					20	13	2	0	0	0	0.14438	1	23236	23236		51.488	34.375	1	4001500			53410	3443	38817	39129	52151	52151					-0.006167427311766005
TEVDARLSF	9	Unmodified	_TEVDARLSF_					0	0	0		ENST00000530119.5_1_11:747481-760254:+|nuORF;ENST00000533796.1_1_11:755745-760254:+|nuORF;nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1	ENST00000530119.5_1_11:747481-760254:+|nuORF	ENST00000530119.5_1_11:747481-760254:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	519.9855346679688	2	519.266739	1036.51892	-0.50644	-0.00026298	-0.54629	-0.00028367	-1.0527	-0.00054665	519.2665729322908	63.817	0.91561	63.817	63.427	64.343	0					43	17	4	0	0	0	0.35628	1	23021	23021		40.725	14.457	1	9879600			53411	8064	38818	39130	52152	52152					0.002125622009543804
TEVDARLSF	9	Unmodified	_TEVDARLSF_					0	0	0		ENST00000530119.5_1_11:747481-760254:+|nuORF;ENST00000533796.1_1_11:755745-760254:+|nuORF;nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1	ENST00000530119.5_1_11:747481-760254:+|nuORF	ENST00000530119.5_1_11:747481-760254:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	519.6664428710938	2	519.266739	1036.51892	-0.63386	-0.00032914	0.27904	0.00014489	-0.35482	-0.00018425	519.2666812168665	63.034	0.65755	63.777	63.484	64.142	0.74263					41	12	5	0	0	0	0.32966	1	23860	23860		49.527	15.425	1	10026000			53412	8064	38818	39130	52153	52153					0.002125622009543804
TEVDIKMKF	9	Unmodified	_TEVDIKMKF_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-SECPEP	A375_MHC_IP_R2	2	371.26708984375	3	370.86697	1109.57908	0.23152	8.5863E-05	1.6658	0.00061779	1.8973	0.00070365	370.8675936728999	55.845	0.71331	56.595	56.287	57	0.75015					30	13	3	0	0	0	0.69507	1	21168	21168		3.5871	0	1	2074900			53413	8080	38819	39131	52154	52154					0.02867536539838511
TEVDNYHFY	9	Unmodified	_TEVDNYHFY_					0	0	0		NFE2L2|p.Q556Tfs*15|1|0.32|ENSG00000116044|chr2:177230937-177230938|-/T|frameshift_variant;nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2	NFE2L2|p.Q556Tfs*15|1|0.32|ENSG00000116044|chr2:177230937-177230938|-/T|frameshift_variant	NFE2L2|p.Q556Tfs*15|1|0.32|ENSG00000116044|chr2:177230937-177230938|-/T|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	594.6533813476562	2	594.253828	1186.4931	-0.34879	-0.00020727	0.11802	7.0135E-05	-0.23076	-0.00013713	594.2538214041673	59.677	0.76282	59.677	59.346	60.109	0					34	14	3	0	0	0	0.0022058	1	21431	21431		142.08	88.247	1	13712000			53414	3364	38820	39132	52155	52155					-0.09268332041324356
TEVDNYHFY	9	Unmodified	_TEVDNYHFY_					0	0	0		NFE2L2|p.Q556Tfs*15|1|0.32|ENSG00000116044|chr2:177230937-177230938|-/T|frameshift_variant;nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2	NFE2L2|p.Q556Tfs*15|1|0.32|ENSG00000116044|chr2:177230937-177230938|-/T|frameshift_variant	NFE2L2|p.Q556Tfs*15|1|0.32|ENSG00000116044|chr2:177230937-177230938|-/T|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	594.6536865234375	2	594.253828	1186.4931	-0.9582	-0.00056941	0.10274	6.1052E-05	-0.85546	-0.00050836	594.2538390287639	59.072	0.75976	59.819	59.438	60.198	0.74714					35	14	3	0	0	0	0.0096397	1	22297	22297		126.57	78.817	1	13342000			53415	3364	38820	39132	52156	52156					-0.09268332041324356
TEVDSRWQEY	10	Unmodified	_TEVDSRWQEY_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;ENST00000485063.1_1_1:39748843-39749872:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	A375_MHC_IP_R1	1	657.194091796875	2	656.793849	1311.57314	-0.28223	-0.00018536	-0.097525	-6.4054E-05	-0.37975	-0.00024942	656.7937190099185	47.862	0.5549	47.862	47.567	48.122	0					27	10	3	0	0	0	3.1693E-05	1	16814	16814		182.24	130.82	1	7690200			53416	4099;14587	38821	39133	52157	52157					-0.07017890438123686
TEVDSRWQEY	10	Unmodified	_TEVDSRWQEY_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;ENST00000485063.1_1_1:39748843-39749872:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	A375_MHC_IP_R2	2	657.1942138671875	2	656.793849	1311.57314	-0.71485	-0.00046951	0.37819	0.00024839	-0.33666	-0.00022112	656.7940507429861	47.235	0.50917	47.996	47.766	48.275	0.76128					23	9	3	0	0	0	3.2845E-05	1	17698	17698		173.14	115.89	1	12875000			53417	4099;14587	38821	39133	52158	52158					-0.07017890438123686
TEVFTLFFSD	10	Unmodified	_TEVFTLFFSD_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-SECPEP	A375_MHC_IP_R1	1	401.9419860839844	3	402.529012	1204.56521	-0.63914	-0.00025727	-3.5525	-0.00143	-4.1916	-0.0016873	402.5275044521322	23.875	0.20275	23.875	23.737	23.94	0					5	3	2	0	0	0	0.93578	1	6609	6609		8.9762	0	1	712630			53418	2226	38822	39134	52159	52159					-0.028894176876065103
TEVGEGVTF	9	Unmodified	_TEVGEGVTF_					0	0	0		ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11;ENST00000507640.1_1_5:61778930-61779155:+|nuORF	ENSG00000086200|ENST00000325324|IPO11	ENSG00000086200|ENST00000325324|IPO11	MULTI-MSMS	A375_MHC_IP_R2	2	939.1719360351562	1	938.446553	937.439277	-0.36169	-0.00033943	-0.24877	-0.00023346	-0.61046	-0.00057289	938.4456281663981	71.036	0.35498	71.771	71.553	71.908	0.73421					10	6	2	0	0	0	0.01001	1	26910	26910		123.45	52.317	1	3639800			53419	1831	38823	39135	52160	52160					-0.03194504473026427
TEVGHVIRY	9	Unmodified	_TEVGHVIRY_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	357.9523620605469	3	358.529458	1072.56654	0.0065071	2.333E-06	-0.17455	-6.2582E-05	-0.16804	-6.0249E-05	358.52940212873045	32.116	0.61445	32.116	31.819	32.434	0					25	11	3	0	0	0	0.4261	1	10304	10304		34.932	28.302	1	11371000			53420	1791	38824	39136	52161	52161					0.033162611917987306
TEVGHVIRY	9	Unmodified	_TEVGHVIRY_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	A375_MHC_IP_R2	2	358.9292297363281	3	358.529458	1072.56654	-0.23677	-8.4889E-05	0.0097532	3.4968E-06	-0.22702	-8.1392E-05	358.52943625893374	31.279	0.66441	31.998	31.77	32.434	0.71857					30	12	4	0	0	0	0.28216	1	11053	11053		38.615	24.209	1	10230000			53421	1791	38824	39136	52162	52162					0.033162611917987306
TEVGLPKRCY	10	Unmodified	_TEVGLPKRCY_					0	0	0			REV__nc|ENSG00000136155|O95171-3|SCEL	REV__nc|ENSG00000136155|O95171-3|SCEL	MULTI-SECPEP	A375_MHC_IP_R1	1	389.93988037109375	3	389.205986	1164.59613	0.010869	4.2302E-06	1.4307	0.00055683	1.4416	0.00056106	389.54021105589453	23.355	0.30686	23.355	23.176	23.483	0					9	5	2	0	0	0	0.91556	1	6435	6435		3.3196	0.24738	1	3730800	+		53422	18920	38825	39137	52163	52163					0.020414571456285557
TEVGPALW	8	Unmodified	_TEVGPALW_					0	0	0		ENST00000461979.1_1_7:150775105-150777853:-|nuORF;ENST00000478477.1_1_7:150775105-150776989:-|nuORF	ENST00000461979.1_1_7:150775105-150777853:-|nuORF	ENST00000461979.1_1_7:150775105-150777853:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	872.4793701171875	1	872.451245	871.443968	-0.39283	-0.00034273	0.52333	0.00045658	0.1305	0.00011385	872.4514140361299	110.93	0.86645	111.66	111.14	112.01	0.73692					41	16	3	0	0	0	0.6817	1	41695	41695		40.449	2.2974	1	7204000			53423	12195	38826	39138	52164	52164					0.003104244603719053
TEVGPALW	8	Unmodified	_TEVGPALW_					0	0	0		ENST00000461979.1_1_7:150775105-150777853:-|nuORF;ENST00000478477.1_1_7:150775105-150776989:-|nuORF	ENST00000461979.1_1_7:150775105-150777853:-|nuORF	ENST00000461979.1_1_7:150775105-150777853:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	872.451245	871.443968	-0.083757	-7.3074E-05	-0.19468	-0.00016985	-0.27843	-0.00024292	872.450905023944	111.48	1.0203	111.48	111.16	112.18	0	-0.091559	-0.00023061	NaN	40.449	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7439300			53424	12195	38826	39138							0.003104244603719053
TEVHMAGYV	9	Unmodified	_TEVHMAGYV_					0	0	0			REV__ENST00000572014.1_1_17:2595653-2597426:-|nuORF	REV__ENST00000572014.1_1_17:2595653-2597426:-|nuORF	MSMS	A375_MHC_IP_R1	1	503.67120361328125	2	503.73676	1005.45897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.475	1	52.475	51.975	52.975	0								0	0	0	0.15486	1	18662	18662		8.5933	0	1		+		53425	18647	38827	39139	52165	52165					-0.04354451733934184
TEVITGTLWN	10	Unmodified	_TEVITGTLWN_					0	0	0		ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;ENST00000527599.1_1_11:57569484-57571277:+|nuORF	ENSG00000198561|ENST00000399050|CTNND1	ENSG00000198561|ENST00000399050|CTNND1	MULTI-MSMS	A375_MHC_IP_R2	2	567.6951293945312	2	567.295496	1132.57644	-0.75065	-0.00042584	-0.14505	-8.2286E-05	-0.8957	-0.00050812	567.2954789054291	52.114	0.65874	52.866	52.677	53.336	0.75225					21	12	3	0	0	0	0.6614	1	19662	19662		23.79	23.79	1	2705500			53426	9283	38828	39140	52166	52166					0.015454044065563721
TEVKNLNSI	9	Unmodified	_TEVKNLNSI_					0	0	0		ENSG00000059691|ENST00000263985|GATB;ENST00000515564.5_1_4:152622580-152640660:-|nuORF	ENSG00000059691|ENST00000263985|GATB	ENSG00000059691|ENST00000263985|GATB	MULTI-SECPEP	A375_MHC_IP_R2	2	509.6817932128906	2	509.282389	1016.55022	-0.64924	-0.00033065	0.2984	0.00015197	-0.35084	-0.00017868	509.2825096551916	43.016	0.35334	43.789	43.623	43.977	0.7724					10	6	2	0	0	0	0.35487	1	16077	16077		29.082	0	1	2120500			53427	1304	38829	39141	52167	52167					0.04261135235026359
TEVKYKKKRL	10	Unmodified	_TEVKYKKKRL_					0	0	0			REV__ENSG00000166578|ENST00000416617|IQCD	REV__ENSG00000166578|ENST00000416617|IQCD	MSMS	A375_MHC_IP_R2	2	646.6732177734375	2	646.906079	1291.79761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.79	1	114.5	114	115	0.70985								0	0	0	0.15541	1	42908	42908		3.2813	0.28607	1		+		53428	20687	38830	39142	52168	52168					0.16337889173632902
TEVLERLKY	9	Unmodified	_TEVLERLKY_					0	0	0			REV__ENSG00000158480|ENST00000289431|SPATA2	REV__ENSG00000158480|ENST00000289431|SPATA2	MSMS	A375_MHC_IP_R1	1	384.2802734375	3	384.220401	1149.63937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.962	1	31.962	31.462	32.462	0								0	0	0	0.15486	1	10281	10281		12.873	1.9736	1		+		53429	20077	38831	39143	52169	52169					0.07053970194556314
TEVLKLLIQ	9	Unmodified	_TEVLKLLIQ_					0	0	0		nc|ENSG00000058272|O14974-5|PPP1R12A;nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A;ENST00000551191.1_1_12:80222078-80226230:-|nuORF	nc|ENSG00000058272|O14974-5|PPP1R12A	nc|ENSG00000058272|O14974-5|PPP1R12A	MSMS	A375_MHC_IP_R2	2	528.7374877929688	2	528.8368	1055.65905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.807	1	48.568	48.068	49.068	0.76128								0	0	0	0.15486	1	17937	17937		11.64	4.3511	1				53430	1291	38832	39144	52170	52170					0.1334434620534921
TEVLKNMGY	9	Unmodified	_TEVLKNMGY_					0	0	0		ENSG00000101421|ENST00000217402|CHMP4B;CHMP4B|p.A112V|1|0.26|ENSG00000101421|chr20:33848611-33848611|C/T|missense_variant	ENSG00000101421|ENST00000217402|CHMP4B	ENSG00000101421|ENST00000217402|CHMP4B	MULTI-MSMS	A375_MHC_IP_R1	1	528.165283203125	2	527.765517	1053.51648	-0.21074	-0.00011122	-0.44727	-0.00023605	-0.65801	-0.00034728	527.7654895027248	48.35	2.5311	48.35	47.416	49.947	0					70	49	2	0	0	0	0.0054362	1	17054	17054		134.3	63.58	1	6552300			53431	2292	38833	39145	52171	52171					-0.008136095283589384
TEVLKNMGY	9	Oxidation (M)	_TEVLKNM(Oxidation (M))GY_		TEVLKNM(1)GY		TEVLKNM(69)GY	0	0	1		ENSG00000101421|ENST00000217402|CHMP4B;CHMP4B|p.A112V|1|0.26|ENSG00000101421|chr20:33848611-33848611|C/T|missense_variant	ENSG00000101421|ENST00000217402|CHMP4B	ENSG00000101421|ENST00000217402|CHMP4B	MULTI-SECPEP	A375_MHC_IP_R2	2	536.1619262695312	2	535.762975	1069.5114	-1.6423	-0.00087986	0.14246	7.6324E-05	-1.4998	-0.00080354	535.7630085130716	29.005	0.39643	29.704	29.484	29.88	0.69872					9	7	2	0	0	0	0.070665	1	10095	10095		69.105	38.468	1	11646000			53432	2292	38833	39146	52172	52172		95			-0.020579133909905067
TEVLPNQRY	9	Unmodified	_TEVLPNQRY_					0	0	0		ENST00000454552.5_3_22:30812232-30824714:+|nuORF;nc|ENSG00000100003|O76054-5|SEC14L2;nc|ENSG00000100003|O76054-4|SEC14L2;ENSG00000100003|ENST00000615189|SEC14L2	ENST00000454552.5_3_22:30812232-30824714:+|nuORF	ENST00000454552.5_3_22:30812232-30824714:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	560.205322265625	2	560.293288	1118.57202	-0.81809	-0.00045837	-0.80987	-0.00045376	-1.628	-0.00091213	560.2924048075597	35.762	0.35537	36.526	36.283	36.638	0.76338					12	6	3	0	0	0	0.67483	1	13013	13013		14.838	1.7958	1	1404000			53433	2100	38834	39147	52173	52173					0.017479399836020093
TEVLVTQEI	9	Unmodified	_TEVLVTQEI_					0	0	0		ENSG00000173442|ENST00000309295|EHBP1L1;ENST00000526990.1_1_11:65349145-65351290:+|nuORF;EHBP1L1|p.E728Rfs*2|1|0.32|ENSG00000173442|chr11:65582853-65582853|G/-|frameshift_variant	ENSG00000173442|ENST00000309295|EHBP1L1	ENSG00000173442|ENST00000309295|EHBP1L1	MULTI-MSMS	A375_MHC_IP_R1	1	1032.479736328125	1	1031.56192	1030.55464	0.26742	0.00027586	-0.76965	-0.00079394	-0.50223	-0.00051808	1031.5612920200085	82.814	0.45364	82.814	82.571	83.024	0					13	8	2	0	0	0	0.17338	1	30295	30295		39.95	9.3132	1	1981600			53434	7797	38835	39148	52174	52174					0.040585996579466155
TEVLVTQEI	9	Unmodified	_TEVLVTQEI_					0	0	0		ENSG00000173442|ENST00000309295|EHBP1L1;ENST00000526990.1_1_11:65349145-65351290:+|nuORF;EHBP1L1|p.E728Rfs*2|1|0.32|ENSG00000173442|chr11:65582853-65582853|G/-|frameshift_variant	ENSG00000173442|ENST00000309295|EHBP1L1	ENSG00000173442|ENST00000309295|EHBP1L1	MULTI-SECPEP	A375_MHC_IP_R1	1	516.6842651367188	2	516.284597	1030.55464	-0.44726	-0.00023092	-0.41749	-0.00021554	-0.86476	-0.00044646	516.2842135557768	82.81	0.60442	82.81	82.571	83.175	0					26	11	3	0	0	0	0.070665	1	30292	30292		69.105	9.031	1	3216000			53435	7797	38835	39148	52175	52175					0.040585996579466155
TEVLVTQEI	9	Unmodified	_TEVLVTQEI_					0	0	0		ENSG00000173442|ENST00000309295|EHBP1L1;ENST00000526990.1_1_11:65349145-65351290:+|nuORF;EHBP1L1|p.E728Rfs*2|1|0.32|ENSG00000173442|chr11:65582853-65582853|G/-|frameshift_variant	ENSG00000173442|ENST00000309295|EHBP1L1	ENSG00000173442|ENST00000309295|EHBP1L1	MULTI-SECPEP	A375_MHC_IP_R2	2	516.6840209960938	2	516.284597	1030.55464	-0.81275	-0.00041961	0.18757	9.6842E-05	-0.62518	-0.00032277	516.2845953730734	82.056	0.76291	82.799	82.381	83.144	0.74293					29	14	3	0	0	0	0.070665	1	31143	31143		69.105	12.928	1	3503500			53436	7797	38835	39148	52176	52176					0.040585996579466155
TEVLWFLLN	9	Unmodified	_TEVLWFLLN_					0	0	0		ENST00000557709.1_1_14:83484701-83484893:-|nuORF	ENST00000557709.1_1_14:83484701-83484893:-|nuORF	ENST00000557709.1_1_14:83484701-83484893:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	378.96820068359375	3	378.877975	1133.6121	-0.2328	-8.8204E-05	-3.0019	-0.0011373	-3.2347	-0.0012255	378.876812160672	21.066	0.40611	21.685	21.422	21.828	0.61932					11	7	2	0	0	0	0.62767	1	6517	6517		11.495	0	1	758370			53437	13457	38836	39149	52177	52177					0.05063486654194094
TEVNSGFFY	9	Unmodified	_TEVNSGFFY_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;CCT6A|p.L444Ffs*16|1|0.27|ENSG00000146731|chr7:56060920-56060921|-/CATT|frameshift_variant;ENST00000482776.1_1_7:56124009-56126486:+|nuORF;nc|ENSG00000132141|Q92526-2|CCT6B;ENSG00000132141|ENST00000314144|CCT6B	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	A375_MHC_IP_R1	1	532.2239379882812	2	532.24019	1062.46583	-0.56713	-0.00030185	1.3736	0.00073108	0.80646	0.00042923	532.240718011163	47.442	0.75763	47.442	47.263	48.02	0					21	14	2	0	0	0	0.58047	1	16638	16638		15.847	3.3156	1	5847100			53438	5633	38837	39150	52178	52178					-0.06290815581701281
TEVNVLCSY	9	Unmodified	_TEVNVLCSY_					0	0	0		ENST00000484157.5_1_1:155108136-155110067:+|nuORF;ENST00000490276.5_1_1:155108315-155110067:+|nuORF	ENST00000484157.5_1_1:155108136-155110067:+|nuORF	ENST00000484157.5_1_1:155108136-155110067:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	514.6653442382812	2	514.241875	1026.4692	-0.62622	-0.00032203	-2.5064	-0.0012889	-3.1326	-0.0016109	514.2404917791775	86.588	0.81394	87.321	87.049	87.863	0.73301					19	15	2	0	0	0	0.40377	1	33014	33014		34.932	17.99	1	928500			53439	12555	38838	39151	52179	52179					-0.0429788879937405
TEVNWIVQY	9	Unmodified	_TEVNWIVQY_					0	0	0		ENST00000556558.1_1_14:69551426-69551618:+|nuORF	ENST00000556558.1_1_14:69551426-69551618:+|nuORF	ENST00000556558.1_1_14:69551426-69551618:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	576.1893310546875	2	576.290214	1150.56587	-0.47673	-0.00027474	-0.15003	-8.6461E-05	-0.62676	-0.0003612	576.2899946676965	57.638	1.0635	58.387	57.865	58.929	0.74894					56	19	4	0	0	0	0.71541	1	21697	21697		11.64	4.3511	1	27228000			53440	13442	38839	39152	52180	52180					-0.0033857824791994062
TEVPGSRPNCH	11	Unmodified	_TEVPGSRPNCH_					0	0	0		ENSG00000268655|ENST00000637680|unknown	ENSG00000268655|ENST00000637680|unknown	ENSG00000268655|ENST00000637680|unknown	MULTI-MSMS	A375_MHC_IP_R1	1	599.17724609375	2	598.777479	1195.5404	-0.34478	-0.00020645	-0.40843	-0.00024456	-0.75322	-0.00045101	598.7769544563537	102.63	0.86259	102.63	102.35	103.22	0					26	16	2	0	0	0	0.72851	1	37745	37745		13.042	13.042	1	1262000			53441	9973	38840	39153	52181	52181					-0.04954376041973774
TEVPVPTRF	9	Unmodified	_TEVPVPTRF_					0	0	0		nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4;nc|ENSG00000080493|Q9Y6R1-3|SLC4A4;nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;ENST00000483195.5_1_2:74452054-74512997:-|nuORF;nc|ENSG00000188687|Q9BY07-6|SLC4A5;nc|ENSG00000188687|Q9BY07-5|SLC4A5;nc|ENSG00000188687|Q9BY07-7|SLC4A5;nc|ENSG00000188687|Q9BY07-4|SLC4A5;nc|ENSG00000188687|Q9BY07-8|SLC4A5;ENST00000451608.2_1_2:74452054-74542150:-|nuORF;ENSG00000188687|ENST00000394019|SLC4A5;nc|ENSG00000188687|Q9BY07|SLC4A5;nc|ENSG00000188687|Q9BY07-2|SLC4A5;nc|ENSG00000033867|Q9Y6M7-11|SLC4A7;nc|ENSG00000033867|Q9Y6M7-14|SLC4A7;nc|ENSG00000033867|Q9Y6M7-10|SLC4A7;nc|ENSG00000033867|Q9Y6M7-4|SLC4A7;nc|ENSG00000033867|Q9Y6M7-3|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;ENSG00000033867|ENST00000454389|SLC4A7	nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;nc|ENSG00000033867|Q9Y6M7-11|SLC4A7	nc|ENSG00000080493|Q9Y6R1-2|SLC4A4	MULTI-MSMS	A375_MHC_IP_R1	1	523.6873168945312	2	523.287474	1044.5604	-0.55414	-0.00028997	-0.069823	-3.6537E-05	-0.62396	-0.00032651	523.2874784674506	64.734	0.66064	64.734	64.444	65.105	0					42	12	5	0	0	0	0.11715	1	23406	23406		47.594	3.7361	1	21599000			53442	1713;1126	38841	39154	52182	52182					0.03989742960266085
TEVPVPTRF	9	Unmodified	_TEVPVPTRF_					0	0	0		nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4;nc|ENSG00000080493|Q9Y6R1-3|SLC4A4;nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;ENST00000483195.5_1_2:74452054-74512997:-|nuORF;nc|ENSG00000188687|Q9BY07-6|SLC4A5;nc|ENSG00000188687|Q9BY07-5|SLC4A5;nc|ENSG00000188687|Q9BY07-7|SLC4A5;nc|ENSG00000188687|Q9BY07-4|SLC4A5;nc|ENSG00000188687|Q9BY07-8|SLC4A5;ENST00000451608.2_1_2:74452054-74542150:-|nuORF;ENSG00000188687|ENST00000394019|SLC4A5;nc|ENSG00000188687|Q9BY07|SLC4A5;nc|ENSG00000188687|Q9BY07-2|SLC4A5;nc|ENSG00000033867|Q9Y6M7-11|SLC4A7;nc|ENSG00000033867|Q9Y6M7-14|SLC4A7;nc|ENSG00000033867|Q9Y6M7-10|SLC4A7;nc|ENSG00000033867|Q9Y6M7-4|SLC4A7;nc|ENSG00000033867|Q9Y6M7-3|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;ENSG00000033867|ENST00000454389|SLC4A7	nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;nc|ENSG00000033867|Q9Y6M7-11|SLC4A7	nc|ENSG00000080493|Q9Y6R1-2|SLC4A4	MULTI-SECPEP	A375_MHC_IP_R2	2	523.2056274414062	2	523.287474	1044.5604	-0.47797	-0.00025012	-0.1802	-9.4295E-05	-0.65817	-0.00034441	523.2873359332746	63.983	0.66	64.723	64.394	65.054	0.74022					44	12	5	0	0	0	0.0575	1	24256	24256		76.825	36.867	1	23900000			53443	1713;1126	38841	39154	52183	52183					0.03989742960266085
TEVPWLWE	8	Unmodified	_TEVPWLWE_					0	0	0		nc|ENSG00000172243|Q9BXN2-5|CLEC7A;nc|ENSG00000172243|Q9BXN2-2|CLEC7A;ENSG00000172243|ENST00000304084|CLEC7A	nc|ENSG00000172243|Q9BXN2-5|CLEC7A	nc|ENSG00000172243|Q9BXN2-5|CLEC7A	MULTI-MSMS	A375_MHC_IP_R1	1	530.705322265625	2	530.260925	1058.5073	-0.72238	-0.00038305	0.33059	0.0001753	-0.39179	-0.00020775	530.2608176972008	65.867	0.55865	65.867	65.514	66.072	0					14	10	2	0	0	0	0.75805	1	23870	23870		18.135	3.5533	1	609550			53444	7693	38842	39155	52184	52184					-0.019616348223735258
TEVQIQKVF	9	Unmodified	_TEVQIQKVF_					0	0	0		ENST00000509696.5_1_4:7062591-7066009:-|nuORF;ENSG00000109519|ENST00000264954|GRPEL1	ENST00000509696.5_1_4:7062591-7066009:-|nuORF	ENST00000509696.5_1_4:7062591-7066009:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	546.7081298828125	2	546.308406	1090.60226	-0.6508	-0.00035554	0.096436	5.2684E-05	-0.55437	-0.00030286	546.3084134965711	65.442	0.56268	65.442	65.257	65.819	0					15	10	2	0	0	0	0.15736	1	23719	23719		61.602	30.965	1	1428700			53445	2873	38843	39156	52185	52185					0.060582986487816015
TEVQLTEL	8	Unmodified	_TEVQLTEL_					0	0	0		ENSG00000171431|ENST00000167588|KRT20;CON__P35900	ENSG00000171431|ENST00000167588|KRT20	ENSG00000171431|ENST00000167588|KRT20	MULTI-MSMS	A375_MHC_IP_R2	2	466.6581115722656	2	466.75039	931.486227	-0.42483	-0.00019829	0.086138	4.0205E-05	-0.33869	-0.00015808	466.75039197489764	100.19	0.76523	100.96	100.57	101.34	0.76278					36	14	4	0	0	0	0.13365	1	37996	37996		88.904	3.6316	1	7864100		+	53446	601	38844	39157	52186	52186					0.017743550780778605
TEVQQAQGQL	10	Unmodified	_TEVQQAQGQL_					0	0	0			REV__ENSG00000133030|ENST00000651222|MPRIP	REV__ENSG00000133030|ENST00000651222|MPRIP	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6610717773438	2	551.280377	1100.5462	-0.67801	-0.00037378	-3.0549	-0.0016841	-3.7329	-0.0020579	551.781372605816	43.069	0.20195	43.841	43.724	43.926	0.7724					5	3	2	0	0	0	0.85226	1	15996	15996		1.3295	0	1	961050	+		53447	18701	38845	39158	52187	52187					-4.9542586793904775E-05
TEVQVFKKY	9	Unmodified	_TEVQVFKKY_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MSMS	A375_MHC_IP_R1	1	381.6134948730469	3	381.213246	1140.61791	0.31544	0.00012025	1.5396	0.00058692	1.8551	0.00070717	381.54836480177994	34.157	0.55798	34.157	33.898	34.456	0					28	10	4	0	0	0	0.2415	1	11224	11224		34.932	14.518	1	5763100			53448	3101	38846	39159	52188	52188					0.053225851658453394
TEVQVFKKY	9	Unmodified	_TEVQVFKKY_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-SECPEP	A375_MHC_IP_R2	2	381.61328125	3	381.213246	1140.61791	-0.26814	-0.00010222	1.7362	0.00066185	1.468	0.00055963	381.5483236373736	33.175	0.66261	33.927	33.584	34.247	0.75225					33	12	4	0	0	0	0.4261	1	11941	11941		22.658	15.556	1	4328800			53449	3101	38846	39159	52189	52189					0.053225851658453394
TEVRLSEGF	9	Unmodified	_TEVRLSEGF_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;nc|ENSG00000198198|Q5T011-4|SZT2;SZT2|p.T1044Ifs*3|1|0.17|ENSG00000198198|chr1:43426802-43426802|C/-|frameshift_variant	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	A375_MHC_IP_R2	2	519.697021484375	2	519.266739	1036.51892	-1.0705	-0.00055587	1.8859	0.00097927	0.81536	0.00042339	519.2686012815593	59.022	0.45666	59.769	59.54	59.996	0.74714					14	8	2	0	0	0	0.46465	1	22304	22304		21.537	3.3906	1	1185300			53450	9241	38847	39160	52190	52190					0.002125622009543804
TEVRRRELL	9	Unmodified	_TEVRRRELL_					0	0	0		ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	MULTI-SECPEP	A375_MHC_IP_R2	2	391.9277038574219	3	391.235045	1170.6833	-0.61088	-0.000239	0.58883	0.00023037	-0.022047	-8.6255E-06	391.2352094922252	26.036	0.50993	26.696	26.347	26.857	0.65992					15	9	2	0	0	0	0.75519	1	8690	8690		10.151	1.1743	1	2137600			53451	1718	38848	39161	52191	52191					0.10478999411566292
TEVRVMWTL	9	Unmodified	_TEVRVMWTL_					0	0	0		ENST00000547135.5_1_12:49231823-49239549:-|nuORF	ENST00000547135.5_1_12:49231823-49239549:-|nuORF	ENST00000547135.5_1_12:49231823-49239549:-|nuORF	MSMS	A375_MHC_IP_R1	1	567.7306518554688	2	567.802434	1133.59032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.33	1	126.33	125.83	126.83	0								0	0	0	0.15486	1	48239	48239		4.3292	0.38484	1				53452	13340	38849	39162	52192	52192					0.02886358633963937
TEVSDGEDEE	10	Unmodified	_TEVSDGEDEE_					0	0	0		ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	MSMS	A375_MHC_IP_R2	2	555.208740234375	2	555.20948	1108.40441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.781	1	29.48	28.98	29.98	0.69872								0	0	0	0.15308	1	9986	9986		10.824	0	1				53453	2076	38850	39163	52193	52193					-0.1454583686231672
TEVSVSVDHG	10	Unmodified	_TEVSVSVDHG_					0	0	0			REV__ENST00000479994.1_1_3:121377041-121379717:-|nuORF	REV__ENST00000479994.1_1_3:121377041-121379717:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	515.6475219726562	2	515.246003	1028.47745	-0.38783	-0.00019983	-1.0251	-0.00052817	-1.4129	-0.000728	515.7461163401988	43.388	1.1687	43.388	42.841	44.01	0					50	22	4	0	0	0	0.45919	1	15079	15079		30.637	4.2953	1	6043200	+		53454	21608	38851	39164	52194	52194					-0.035646185583800616
TEVTDYRF	8	Unmodified	_TEVTDYRF_					0	0	0		nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA	nc|ENSG00000278540|Q13085|ACACA	nc|ENSG00000278540|Q13085|ACACA	MULTI-MSMS	A375_MHC_IP_R2	2	515.647216796875	2	515.745639	1029.47673	-0.70139	-0.00036174	0.9295	0.00047938	0.2281	0.00011764	515.7462802172384	42.385	0.66288	43.158	42.86	43.523	0.7724					28	12	3	0	0	0	0.74466	1	15868	15868		21.747	2.4897	1	5725900			53455	10037	38852	39165	52195	52195					-0.036834132074318404
TEVTFSLAYEE	11	Unmodified	_TEVTFSLAYEE_					0	0	0		ENSG00000102313|ENST00000218436|ITIH6;ENSG00000102313.9,ITIH6,chrX,-,I5.1,54787726,54788479|96|26.49|1|intron;ENSG00000102313.9,ITIH6,chrX,-,I5.1,54787726,54788479|96|26.49|3|intron	ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	MSMS	A375_MHC_IP_R1	1	644.7137451171875	2	644.800808	1287.58706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.793	1	85.793	85.293	86.293	0								0	0	0	0.15377	1	31448	31448		18.146	1.0335	1				53456	2372	38853	39166	52196	52196					-0.04522657729717139
TEVTGHRW	8	Unmodified	_TEVTGHRW_					0	0	0		ENSG00000172270|ENST00000333511|BSG;ENST00000576925.3_1_19:572634-579657:+|nuORF;chr19:579656-581444|471|103.24|0.0|23.3|+|ENST00000618112|BSG,None;nc|ENSG00000172270|P35613-2|BSG	ENSG00000172270|ENST00000333511|BSG	ENSG00000172270|ENST00000333511|BSG	MULTI-MSMS	A375_MHC_IP_R1	1	493.64593505859375	2	493.246141	984.477728	-0.1602	-7.9017E-05	-0.25344	-0.00012501	-0.41364	-0.00020402	493.24594171459063	20.976	0.76467	20.976	20.587	21.352	0					33	14	3	0	0	0	0.058215	1	5418	5418		131.27	131.27	1	11971000			53457	7697	38854	39167	52197	52197					-0.015131540478705574
TEVTGHRW	8	Unmodified	_TEVTGHRW_					0	0	0		ENSG00000172270|ENST00000333511|BSG;ENST00000576925.3_1_19:572634-579657:+|nuORF;chr19:579656-581444|471|103.24|0.0|23.3|+|ENST00000618112|BSG,None;nc|ENSG00000172270|P35613-2|BSG	ENSG00000172270|ENST00000333511|BSG	ENSG00000172270|ENST00000333511|BSG	MULTI-MSMS	A375_MHC_IP_R2	2	493.6454772949219	2	493.246141	984.477728	-0.79092	-0.00039012	0.1241	6.1212E-05	-0.66682	-0.00032891	493.2460458947977	19.408	0.50769	20.011	19.783	20.291	0.60308					23	9	3	0	0	0	0.03252	1	5962	5962		118.89	118.89	1	6304400			53458	7697	38854	39167	52198	52198					-0.015131540478705574
TEVTPAVKDEP	11	Unmodified	_TEVTPAVKDEP_					0	0	0			REV__ENSG00000139531|ENST00000266971|SUOX	REV__ENSG00000139531|ENST00000266971|SUOX	MULTI-SECPEP	A375_MHC_IP_R2	2	395.951904296875	3	395.871438	1184.59248	-0.46673	-0.00018477	1.8165	0.0007191	1.3498	0.00053433	395.8724608447605	23.152	0.25555	23.783	23.572	23.828	0.63014					6	4	2	0	0	0	0.9836	1	7405	7405		3.8459	0	1	1048000	+		53459	19160	38855	39168	52199	52199					0.007570658527583873
TEVTRYLDF	9	Unmodified	_TEVTRYLDF_					0	0	0		ENST00000491154.1_1_X:153666748-153668487:+|nuORF;ENSG00000203879|ENST00000447750|GDI1;ENSG00000057608|ENST00000380191|GDI2	ENST00000491154.1_1_X:153666748-153668487:+|nuORF;ENSG00000057608|ENST00000380191|GDI2	ENST00000491154.1_1_X:153666748-153668487:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	572.68603515625	2	572.287671	1142.56079	-0.1998	-0.00011435	0.25551	0.00014623	0.055709	3.1882E-05	572.7894000242732	83.851	1.4276	84.59	83.998	85.426	0.73962					44	27	3	0	0	0	0.46121	1	31824	31824		38.615	7.9113	1	4981100			53460	12655;1286	38856	39169	52200	52200					-0.004788821105421448
TEVTSSSRTS	10	Unmodified	_TEVTSSSRTS_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.K10017Ifs*3|1|0.07|ENSG00000181143|chr19:8946720-8946721|-/A|frameshift_variant;MUC16|p.L10196Yfs*32|1|0.2|ENSG00000181143|chr19:8946183-8946183|A/-|frameshift_variant;MUC16|p.N7637Ifs*2|1|0.95|ENSG00000181143|chr19:8953860-8953860|T/-|frameshift_variant;MUC16|p.R8155K|1|0.47|ENSG00000181143|chr19:8952306-8952306|C/T|missense_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MSMS	A375_MHC_IP_R1	1	527.6534423828125	2	527.754192	1053.49383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.427	1	48.427	47.927	48.927	0								0	0	0	0.13064	1	17085	17085		34.402	2.0962	1				53461	8335	38857	39170	52201	52201					-0.030775373922551807
TEVVADNSSY	10	Unmodified	_TEVVADNSSY_					0	0	0			REV__ENST00000481463.5_1_3:195078468-195162982:-|nuORF	REV__ENST00000481463.5_1_3:195078468-195162982:-|nuORF	MSMS	A375_MHC_IP_R2	2	542.6728515625	2	542.743293	1083.47203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.829	1	38.604	38.104	39.104	0.77451								0	0	0	0.14983	1	13871	13871		18.146	0	1		+		53462	17820	38858	39171	52202	52202					-0.0663634214083686
TEVVERKEW	9	Unmodified	_TEVVERKEW_					0	0	0		NPSR1|p.G38R|1|0.41|ENSG00000187258|chr7:34658524-34658524|G/A|missense_variant	NPSR1|p.G38R|1|0.41|ENSG00000187258|chr7:34658524-34658524|G/A|missense_variant	NPSR1|p.G38R|1|0.41|ENSG00000187258|chr7:34658524-34658524|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	588.7064208984375	2	588.306395	1174.59824	-0.47119	-0.00027721	0.27187	0.00015994	-0.19932	-0.00011726	588.3067067295332	66.249	0.45531	66.249	66.022	66.478	0					18	8	3	0	0	0	0.75519	1	23998	23998		14.838	0	1	2755300			53463	15026	38859	39172	52203	52203					0.01792209155087221
TEVVVATKNER	11	Unmodified	_TEVVVATKNER_					0	0	0			REV__RPL18|p.G84E|1|0.35|ENSG00000063177|chr19:48616772-48616772|C/T|missense_variant	REV__RPL18|p.G84E|1|0.35|ENSG00000063177|chr19:48616772-48616772|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	415.4366455078125	3	415.898098	1244.67246	0.60246	0.00025056	-0.13086	-5.4425E-05	0.47159	0.00019613	415.8981301662775	22.024	0.45844	22.024	21.757	22.216	0					19	8	3	0	0	0	0.99548	1	5792	5792		5.8681	1.7515	1	2508200	+		53464	27897	38860	39173	52204	52204					0.05991552246587162
TEVVVRQLFD	10	Unmodified	_TEVVVRQLFD_					0	0	0			REV__ENSG00000186583|ENST00000377470|SPATC1	REV__ENSG00000186583|ENST00000377470|SPATC1	MULTI-SECPEP	A375_MHC_IP_R2	2	403.2558898925781	3	402.555672	1204.64519	-0.37291	-0.00015012	0.14066	5.6623E-05	-0.23225	-9.3495E-05	402.555664866363	38.388	0.40464	39.162	38.997	39.401	0.77451					9	7	2	0	0	0	0.93578	1	14127	14127		8.9762	7.384	1	1420000	+		53465	21976	38861	39174	52205	52205					0.05105068706234306
TEWLDGKHVVF	11	Unmodified	_TEWLDGKHVVF_					0	0	0		ENST00000450588.1_1_20:36158731-36158923:+|nuORF;ENST00000557282.1_1_12:98984503-98984704:-|nuORF;nc|ENSG00000196262|P62937-2|PPIA;ENST00000577627.1_1_18:5002795-5003119:-|nuORF;ENST00000454070.2_1_1:101736433-101736811:-|nuORF;ENST00000527147.1_1_11:100537243-100537690:+|nuORF;ENSG00000196262|ENST00000468812|PPIA	ENST00000450588.1_1_20:36158731-36158923:+|nuORF	ENST00000450588.1_1_20:36158731-36158923:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	444.9654541015625	3	444.231189	1329.67174	-0.11995	-5.3284E-05	-0.28047	-0.00012459	-0.40041	-0.00017788	444.23104367572057	77.123	0.81184	77.123	76.776	77.588	0					39	15	4	0	0	0	0.52331	1	28089	28089		29.291	23.423	1	6527000			53466	9020	38862	39175	52206	52206					0.020087575975367145
TEWLDGKHVVF	11	Unmodified	_TEWLDGKHVVF_					0	0	0		ENST00000450588.1_1_20:36158731-36158923:+|nuORF;ENST00000557282.1_1_12:98984503-98984704:-|nuORF;nc|ENSG00000196262|P62937-2|PPIA;ENST00000577627.1_1_18:5002795-5003119:-|nuORF;ENST00000454070.2_1_1:101736433-101736811:-|nuORF;ENST00000527147.1_1_11:100537243-100537690:+|nuORF;ENSG00000196262|ENST00000468812|PPIA	ENST00000450588.1_1_20:36158731-36158923:+|nuORF	ENST00000450588.1_1_20:36158731-36158923:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	666.2423706054688	2	665.843145	1329.67174	-0.619	-0.00041215	0.097804	6.5122E-05	-0.52119	-0.00034703	665.8430279749555	77.108	0.50737	77.108	76.878	77.386	0					16	9	2	0	0	0	0.035959	1	28120	28120		107.56	84.827	1	3334200			53467	9020	38862	39175	52207	52207					0.020087575975367145
TEWLDGKHVVF	11	Unmodified	_TEWLDGKHVVF_					0	0	0		ENST00000450588.1_1_20:36158731-36158923:+|nuORF;ENST00000557282.1_1_12:98984503-98984704:-|nuORF;nc|ENSG00000196262|P62937-2|PPIA;ENST00000577627.1_1_18:5002795-5003119:-|nuORF;ENST00000454070.2_1_1:101736433-101736811:-|nuORF;ENST00000527147.1_1_11:100537243-100537690:+|nuORF;ENSG00000196262|ENST00000468812|PPIA	ENST00000450588.1_1_20:36158731-36158923:+|nuORF	ENST00000450588.1_1_20:36158731-36158923:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	444.96514892578125	3	444.231189	1329.67174	-0.3627	-0.00016112	-0.27382	-0.00012164	-0.63652	-0.00028276	444.231035039773	76.303	0.9135	77.044	76.691	77.604	0.74052					37	17	3	0	0	0	0.56388	1	28945	28945		26.121	19.497	1	7236900			53468	9020	38862	39175	52208	52208					0.020087575975367145
TEWLDGKHVVF	11	Unmodified	_TEWLDGKHVVF_					0	0	0		ENST00000450588.1_1_20:36158731-36158923:+|nuORF;ENST00000557282.1_1_12:98984503-98984704:-|nuORF;nc|ENSG00000196262|P62937-2|PPIA;ENST00000577627.1_1_18:5002795-5003119:-|nuORF;ENST00000454070.2_1_1:101736433-101736811:-|nuORF;ENST00000527147.1_1_11:100537243-100537690:+|nuORF;ENSG00000196262|ENST00000468812|PPIA	ENST00000450588.1_1_20:36158731-36158923:+|nuORF	ENST00000450588.1_1_20:36158731-36158923:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	666.2425537109375	2	665.843145	1329.67174	-0.81164	-0.00054043	-0.33219	-0.00022118	-1.1438	-0.00076161	665.8429810601864	76.253	0.55904	76.993	76.691	77.25	0.74052					16	10	2	0	0	0	0.16642	1	28957	28957		67.081	51.832	1	2722600			53469	9020	38862	39175	52209	52209					0.020087575975367145
TEWLHEVL	8	Unmodified	_TEWLHEVL_					0	0	0		ENSG00000198218|ENST00000395443|QRICH1;ENST00000479449.1_1_3:49070551-49094468:-|nuORF	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MULTI-SECPEP	A375_MHC_IP_R1	1	513.9733276367188	2	513.766374	1025.5182	0.0063921	3.284E-06	-0.26117	-0.00013418	-0.25478	-0.0001309	513.7660590217602	45.074	1.0129	45.074	44.471	45.484	0					35	19	3	0	0	0	0.93416	1	15628	15628		14.582	0	1	1881500			53470	9244	38863	39176	52210	52210					0.0064576755189591495
TEWQEKRRD	9	Unmodified	_TEWQEKRRD_					0	0	0			REV__nc|ENSG00000227345|Q86W56-3|PARG	REV__nc|ENSG00000227345|Q86W56-3|PARG	MSMS	A375_MHC_IP_R2	2	416.62274169921875	3	416.542426	1246.60545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.282	1	36.045	35.545	36.545	0.76338								0	0	0	0.15438	1	12785	12785		14.405	3.6059	1		+		53471	22729	38864	39177	52211	52211					-0.007990582444790562
TEWTECRV	8	Unmodified	_TEWTECRV_					0	0	0		ENSG00000005108|ENST00000423059|THSD7A;THSD7A|p.P439S|1|0.15|ENSG00000005108|chr7:11590598-11590598|G/A|missense_variant	ENSG00000005108|ENST00000423059|THSD7A	ENSG00000005108|ENST00000423059|THSD7A	MULTI-SECPEP	A375_MHC_IP_R2	2	511.69952392578125	2	512.231842	1022.44913	-0.87826	-0.00044987	1.8012	0.00092262	0.92291	0.00047274	512.7326007683698	66.528	0.25514	67.265	67.138	67.393	0.73631					5	4	2	0	0	0	0.972	1	25228	25228		0.69038	0	1	374500			53472	884	38865	39178	52212	52212					-0.06119639739301874
TEWVGATTDW	10	Unmodified	_TEWVGATTDW_					0	0	0		ENSG00000168028|ENST00000301821|RPSA;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2	ENSG00000168028|ENST00000301821|RPSA	ENSG00000168028|ENST00000301821|RPSA	MULTI-MSMS	A375_MHC_IP_R1	1	583.6613159179688	2	583.261653	1164.50875	-0.18163	-0.00010594	-0.27953	-0.00016304	-0.46116	-0.00026898	583.2614372250392	101.24	0.80942	101.24	100.89	101.7	0					34	15	3	0	0	0	0.0087379	1	37186	37186		107.19	81.788	1	3742900			53473	7255	38866	39179	52213	52213					-0.06692045524300738
TEWVGATTDW	10	Unmodified	_TEWVGATTDW_					0	0	0		ENSG00000168028|ENST00000301821|RPSA;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2	ENSG00000168028|ENST00000301821|RPSA	ENSG00000168028|ENST00000301821|RPSA	MULTI-MSMS	A375_MHC_IP_R2	2	583.6610717773438	2	583.261653	1164.50875	-0.23263	-0.00013568	0.013878	8.0947E-06	-0.21875	-0.00012759	583.2615790370224	100.54	0.71661	101.31	100.88	101.6	0.76278					31	13	3	0	0	0	0.010005	1	38091	38091		92.491	67.5	1	4588000			53474	7255	38866	39179	52214	52214					-0.06692045524300738
TEWVLFVDDY	10	Unmodified	_TEWVLFVDDY_					0	0	0			REV__ENST00000473458.5_1_22:25240737-25320238:+|nuORF	REV__ENST00000473458.5_1_22:25240737-25320238:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	643.00146484375	2	643.800611	1285.58667	-0.90029	-0.00057961	-0.82052	-0.00052825	-1.7208	-0.0011079	644.3027095312553	40.864	0.86399	41.639	41.133	41.997	0.77451					21	16	2	0	0	0	0.9269	1	15126	15126		10.824	0	1	1485000	+		53475	20727	38867	39180	52215	52215					-0.044700326588781536
TEYCPPITM	9	Unmodified	_TEYCPPITM_					0	0	0			REV__nc|ENSG00000154975|Q9NS85-2|CA10	REV__nc|ENSG00000154975|Q9NS85-2|CA10	MULTI-MSMS	A375_MHC_IP_R2	2	527.6685180664062	2	527.732828	1053.4511	-0.77416	-0.00040855	-0.86192	-0.00045486	-1.6361	-0.00086341	527.7323741170064	71.461	0.76116	72.195	71.857	72.618	0.73421					27	14	3	0	0	0	0.64808	1	27270	27270		11.64	3.047	1	4140700	+		53476	19909	38868	39181	52216	52216					-0.07348347045740411
TEYFAALMT	9	Unmodified	_TEYFAALMT_					0	0	0		ENSG00000052749|ENST00000370992|RRP12	ENSG00000052749|ENST00000370992|RRP12	ENSG00000052749|ENST00000370992|RRP12	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1456298828125	2	523.746793	1045.47903	-0.50509	-0.00026454	4.0936	0.002144	3.5885	0.0018795	523.7504152750829	31.93	0.30618	31.93	31.769	32.075	0					7	5	2	0	0	0	0.47368	1	10282	10282		20.454	0	1	924520			53477	1240	38869	39182	52217	52217					-0.04188700793974931
TEYGFYHDF	9	Unmodified	_TEYGFYHDF_					0	0	0		TARS2|p.P155S|1|0.45|ENSG00000143374|chr1:150490676-150490676|C/T|missense_variant;nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2	TARS2|p.P155S|1|0.45|ENSG00000143374|chr1:150490676-150490676|C/T|missense_variant	TARS2|p.P155S|1|0.45|ENSG00000143374|chr1:150490676-150490676|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	590.1429443359375	2	589.743096	1177.47164	-0.30965	-0.00018261	0.37922	0.00022364	0.069577	4.1033E-05	589.7429247127412	75.135	0.60606	75.135	74.908	75.514	0					26	11	3	0	0	0	0.022213	1	27376	27376		81.613	56.214	1	2307500			53478	5377	38870	39183	52218	52218					-0.10999717070058068
TEYGFYHDF	9	Unmodified	_TEYGFYHDF_					0	0	0		TARS2|p.P155S|1|0.45|ENSG00000143374|chr1:150490676-150490676|C/T|missense_variant;nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2	TARS2|p.P155S|1|0.45|ENSG00000143374|chr1:150490676-150490676|C/T|missense_variant	TARS2|p.P155S|1|0.45|ENSG00000143374|chr1:150490676-150490676|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	590.1423950195312	2	589.743096	1177.47164	-0.60864	-0.00035894	0.24267	0.00014311	-0.36597	-0.00021583	589.7430835179716	74.531	0.50891	75.268	74.958	75.467	0.73751					21	9	3	0	0	0	0.010037	1	28263	28263		96.285	63.979	1	3347000			53479	5377	38870	39183	52219	52219					-0.10999717070058068
TEYGKRILL	9	Unmodified	_TEYGKRILL_					0	0	0			REV__ENST00000454703.6_1_4:185677671-185677848:-|nuORF	REV__ENST00000454703.6_1_4:185677671-185677848:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	546.234375	2	546.824224	1091.63389	-0.95709	-0.00052336	0.42654	0.00023324	-0.53055	-0.00029012	546.824402640366	50.378	1.011	51.132	50.804	51.815	0.75406					48	19	4	0	0	0	0.67483	1	19170	19170		6.2058	0	1	37701000	+		53480	24922	38871	39184	52220	52220					0.09174291402769086
TEYHHSLDF	9	Unmodified	_TEYHHSLDF_					0	0	0			REV__CON__Q0VBK2	REV__CON__Q0VBK2	MSMS	A375_MHC_IP_R1	1	574.6802368164062	2	574.753995	1147.49344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.695	1	53.695	53.195	54.195	0								0	0	0	0.1521	1	19154	19154		18.135	1.1927	1		+	+	53481	15869	38872	39185	52221	52221					-0.0744091232147639
TEYIDTDSE	9	Unmodified	_TEYIDTDSE_					0	0	0			REV__ENSG00000189269|ENST00000317749|DRICH1	REV__ENSG00000189269|ENST00000317749|DRICH1	MULTI-MSMS	A375_MHC_IP_R1	1	536.6712036132812	2	536.719484	1071.42441	-0.71142	-0.00038183	0.202	0.00010841	-0.50943	-0.00027342	536.7195776576032	50.635	0.356	50.635	50.408	50.764	0					9	6	2	0	0	0	0.6898	1	17911	17911		7.9102	0.62092	1	802450	+		53482	22146	38873	39186	52222	52222					-0.10844041131713311
TEYIPDPERVF	11	Unmodified	_TEYIPDPERVF_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11;PDCD11|p.Q1278Rfs*16|1|0.47|ENSG00000148843|chr10:103434958-103434958|C/-|frameshift_variant	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-SECPEP	A375_MHC_IP_R1	1	683.7376098632812	2	683.337892	1364.66123	-0.54277	-0.0003709	0.6417	0.0004385	0.098927	6.7601E-05	683.3383838114457	93.539	0.71468	93.539	93.125	93.84	0					18	13	2	0	0	0	0.39105	1	34394	34394		28.234	12.985	1	2678900			53483	5771	38874	39187	52223	52223					-0.006512698475489742
TEYIPDPERVF	11	Unmodified	_TEYIPDPERVF_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11;PDCD11|p.Q1278Rfs*16|1|0.47|ENSG00000148843|chr10:103434958-103434958|C/-|frameshift_variant	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	A375_MHC_IP_R2	2	683.7369384765625	2	683.337892	1364.66123	-0.5769	-0.00039422	0.025797	1.7628E-05	-0.5511	-0.00037659	683.3380260149896	92.939	0.60809	93.678	93.291	93.899	0.73902					18	11	2	0	0	0	0.69759	1	35362	35362		15.739	4.9391	1	2433500			53484	5771	38874	39187	52224	52224					-0.006512698475489742
TEYIPDPERVF	11	Unmodified	_TEYIPDPERVF_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11;PDCD11|p.Q1278Rfs*16|1|0.47|ENSG00000148843|chr10:103434958-103434958|C/-|frameshift_variant	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	683.337892	1364.66123	-0.5769	-0.00039422	0.025797	1.7628E-05	-0.5511	-0.00037659	683.3380260149896	92.939	0.60809	93.678	93.291	93.899	0.73902	0.06959	-0.00052061	NaN	28.234	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2433500			53485	5771	38874	39187							-0.006512698475489742
TEYKKKLAE	9	Unmodified	_TEYKKKLAE_					0	0	0		nc|ENSG00000145321|P02774-2|GC;ENSG00000145321|ENST00000273951|GC;nc|ENSG00000145321|P02774-3|GC;CON__Q3MHN5;CON__ENSEMBL:ENSBTAP00000018229	nc|ENSG00000145321|P02774-2|GC	nc|ENSG00000145321|P02774-2|GC	MULTI-SECPEP	A375_MHC_IP_R1	1	370.9342041015625	3	370.544885	1108.61282	0.25332	9.3866E-05	-0.8909	-0.00033012	-0.63758	-0.00023625	370.54491529236077	41.01	0.55486	41.01	40.559	41.114	0					17	10	2	0	0	0	0.79713	1	14170	14170		1.9064	0	1	1684300		+	53486	5551	38875	39188	52225	52225					0.062862813032325
TEYLEERRI	9	Unmodified	_TEYLEERRI_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-SECPEP	A375_MHC_IP_R2	2	403.6434631347656	3	403.547177	1207.6197	0.0066174	2.6704E-06	-0.11336	-4.5746E-05	-0.10674	-4.3076E-05	403.54708410695474	31.953	0.40511	32.69	32.401	32.806	0.73691					13	7	3	0	0	0	0.67323	1	11374	11374		18.721	5.2026	1	1913000			53487	1722	38876	39189	52226	52226					0.024195941838115687
TEYLTKWPKFF	11	Unmodified	_TEYLTKWPKFF_					0	0	0		ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	MULTI-SECPEP	A375_MHC_IP_R2	2	729.8718872070312	2	730.384645	1458.75474	-0.94286	-0.00068865	-0.019279	-1.4081E-05	-0.96214	-0.00070273	730.3847122375156	55.024	0.56065	55.775	55.523	56.084	0.75075					21	10	3	0	0	0	0.99791	1	20707	20707		0.96228	0	1	4770500			53488	8595	38877	39190	52227	52227					0.04371074325513291
TEYMFCAGY	9	Unmodified	_TEYMFCAGY_					0	0	0		ENSG00000057593|ENST00000346342|F7;nc|ENSG00000057593|P08709|F7	ENSG00000057593|ENST00000346342|F7	ENSG00000057593|ENST00000346342|F7	MSMS	A375_MHC_IP_R1	1	542.6583862304688	2	542.709353	1083.40415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.55	1	60.55	60.05	61.05	0								0	0	0	0.1521	1	21800	21800		18.135	7.3111	1				53489	1285	38878	39191	52228	52228					-0.13421206596854063
TEYPVQRNY	9	Unmodified	_TEYPVQRNY_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP;nc|ENSG00000133030|Q6WCQ1-3|MPRIP;nc|ENSG00000133030|Q6WCQ1|MPRIP;nc|ENSG00000133030|Q6WCQ1-2|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	A375_MHC_IP_R1	1	585.6827392578125	2	585.28292	1168.55129	-0.58706	-0.0003436	0.23455	0.00013728	-0.35251	-0.00020632	585.2830036780643	30.362	0.85929	30.362	30.099	30.959	0					44	16	4	0	0	0	0.010055	2	9605	9549;9605		125.53	77.183	1	34513000			53490	4476	38879	39192	52229;52230	52230					-0.026246503960464906
TEYPVQRNY	9	Unmodified	_TEYPVQRNY_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP;nc|ENSG00000133030|Q6WCQ1-3|MPRIP;nc|ENSG00000133030|Q6WCQ1|MPRIP;nc|ENSG00000133030|Q6WCQ1-2|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	A375_MHC_IP_R2	2	585.6826782226562	2	585.28292	1168.55129	-0.91094	-0.00053316	0.34229	0.00020034	-0.56865	-0.00033282	585.2830929928039	29.864	1.1119	30.563	30.185	31.297	0.69872					48	21	4	0	0	0	0.0099819	1	10399	10399		122.18	73.833	1	50743000			53491	4476	38879	39192	52231	52231					-0.026246503960464906
TEYRGALLW	9	Unmodified	_TEYRGALLW_					0	0	0		ENST00000490041.1_1_7:8198147-8258054:-|nuORF;nc|ENSG00000163596|Q8NDH6-2|ICA1L;nc|ENSG00000003147|Q05084-3|ICA1;ENSG00000163596|ENST00000358299|ICA1L;ENSG00000003147|ENST00000402384|ICA1;nc|ENSG00000003147|Q05084-2|ICA1	ENST00000490041.1_1_7:8198147-8258054:-|nuORF	ENST00000490041.1_1_7:8198147-8258054:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	555.192138671875	2	554.792924	1107.57129	-0.70894	-0.00039331	0.60817	0.00033741	-0.10077	-5.5907E-05	554.7929964045139	84.106	0.65589	84.106	83.786	84.442	0					28	12	3	0	0	0	0.48845	1	30769	30769		20.415	0	1	3438200			53492	858	38880	39193	52232	52232					0.021811453345662812
TEYRGALLW	9	Unmodified	_TEYRGALLW_					0	0	0		ENST00000490041.1_1_7:8198147-8258054:-|nuORF;nc|ENSG00000163596|Q8NDH6-2|ICA1L;nc|ENSG00000003147|Q05084-3|ICA1;ENSG00000163596|ENST00000358299|ICA1L;ENSG00000003147|ENST00000402384|ICA1;nc|ENSG00000003147|Q05084-2|ICA1	ENST00000490041.1_1_7:8198147-8258054:-|nuORF	ENST00000490041.1_1_7:8198147-8258054:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1924438476562	2	554.792924	1107.57129	-0.75558	-0.00041919	-0.019986	-1.1088E-05	-0.77556	-0.00043028	554.792908674528	83.167	0.86237	83.907	83.494	84.356	0.73962					23	16	2	0	0	0	0.38134	1	31601	31601		41.956	25.013	1	4162800			53493	858	38880	39193	52233	52233					0.021811453345662812
TEYRNTYI	8	Unmodified	_TEYRNTYI_					0	0	0			REV__ENSG00000177294|ENST00000321535|FBXO39	REV__ENSG00000177294|ENST00000321535|FBXO39	MULTI-SECPEP	A375_MHC_IP_R2	2	529.962158203125	2	530.258914	1058.50327	-0.40703	-0.00021583	-0.42468	-0.00022519	-0.83171	-0.00044102	530.2589730341433	43.762	0.5041	44.531	44.278	44.782	0.7691					15	9	2	0	0	0	0.73227	1	16298	16298		37.974	0	1	1208600	+		53494	21450	38881	39194	52234	52234					-0.023637243161147126
TEYRQVLSDLS	11	Unmodified	_TEYRQVLSDLS_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;ENST00000431872.1_1_9:68357853-68358255:-|nuORF;nc|ENSG00000167306|Q9ULV0-3|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	A375_MHC_IP_R1	1	655.245361328125	2	655.832974	1309.6514	-0.43304	-0.000284	-2.8926	-0.0018971	-3.3256	-0.0021811	656.3324911274345	87.967	0.25316	87.967	87.747	88	0					6	4	2	0	0	0	0.95991	1	32265	32265		8.7454	5.4641	1	4454900			53495	7176	38882	39195	52235	52235					0.008955421471227965
TEYTGPKLY	9	Unmodified	_TEYTGPKLY_					0	0	0		nc|ENSG00000118200|Q08AD1-2|CAMSAP2;ENSG00000118200|ENST00000358823|CAMSAP2;nc|ENSG00000118200|Q08AD1|CAMSAP2	nc|ENSG00000118200|Q08AD1-2|CAMSAP2	nc|ENSG00000118200|Q08AD1-2|CAMSAP2	MULTI-MSMS	A375_MHC_IP_R1	1	536.2191772460938	2	536.27149	1070.52843	-0.70032	-0.00037556	0.15734	8.4375E-05	-0.54299	-0.00029119	536.2715034911421	50.739	0.96524	50.739	50.305	51.27	0					56	18	5	0	0	0	0.010055	1	18007	18007		125.53	69.352	1	37581000			53496	14563	38883	39196	52236	52236					-0.0040166951350784075
TEYTGPKLY	9	Unmodified	_TEYTGPKLY_					0	0	0		nc|ENSG00000118200|Q08AD1-2|CAMSAP2;ENSG00000118200|ENST00000358823|CAMSAP2;nc|ENSG00000118200|Q08AD1|CAMSAP2	nc|ENSG00000118200|Q08AD1-2|CAMSAP2	nc|ENSG00000118200|Q08AD1-2|CAMSAP2	MULTI-MSMS	A375_MHC_IP_R2	2	536.2186889648438	2	536.27149	1070.52843	-1.0874	-0.00058317	0.39489	0.00021177	-0.69256	-0.0003714	536.2716666251499	50.017	1.068	50.771	50.344	51.412	0.75406					63	20	5	0	0	0	0.0028938	1	18798	18798		157.8	101.62	1	33858000			53497	14563	38883	39196	52237	52237					-0.0040166951350784075
TEYTKLLKEVV	11	Unmodified	_TEYTKLLKEVV_					0	0	0			REV__nc|ENSG00000189367|Q6ZU52-2|KIAA0408	REV__nc|ENSG00000189367|Q6ZU52-2|KIAA0408	MULTI-MSMS	A375_MHC_IP_R1	1	441.9901123046875	3	441.590383	1321.74932	-0.13146	-5.8052E-05	-0.13241	-5.8469E-05	-0.26387	-0.00011652	441.59021632482336	33.353	0.65861	33.353	32.989	33.648	0					28	12	3	0	0	0	0.7328	1	10811	10811		6.2344	0.36622	1	4091500	+		53498	22151	38884	39197	52238	52238					0.10131350743063194
TEYTKLLKEVV	11	Unmodified	_TEYTKLLKEVV_					0	0	0			REV__nc|ENSG00000189367|Q6ZU52-2|KIAA0408	REV__nc|ENSG00000189367|Q6ZU52-2|KIAA0408	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	441.590383	1321.74932	-0.13146	-5.8052E-05	-0.13241	-5.8469E-05	-0.26387	-0.00011652	441.59021632482336	33.353	0.65861	33.353	32.989	33.648	0	0.065676	-0.00010468	NaN	6.2344	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4091500	+		53499	22151	38884	39197							0.10131350743063194
TEYTPDPNHGF	11	Unmodified	_TEYTPDPNHGF_					0	0	0		nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT	MULTI-MSMS	A375_MHC_IP_R1	1	640.6962280273438	2	639.275292	1276.53603	-0.65287	-0.00041736	-0.026436	-1.69E-05	-0.6793	-0.00043426	639.2752981218492	46.302	1.0111	46.302	45.89	46.901	0					53	19	4	0	0	0	0.21365	1	16218	16218		53.404	38.156	1	34516000			53500	3874;14576	38885	39198	52239	52239					-0.09117561983907763
TEYTPDPNHGF	11	Unmodified	_TEYTPDPNHGF_					0	0	0		nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-4|PIGT	MULTI-MSMS	A375_MHC_IP_R2	2	639.6746826171875	2	639.275292	1276.53603	-0.75515	-0.00048275	0.0017357	1.1096E-06	-0.75342	-0.00048164	639.275304995607	45.71	0.85799	46.476	45.997	46.855	0.76519					50	16	4	0	0	0	1.9434E-08	2	17023	17023;17182		163.69	128.75	1	31044000			53501	3874;14576	38885	39198	52240;52241	52240					-0.09117561983907763
TEYVATRW	8	Unmodified	_TEYVATRW_					0	0	0		ENSG00000008086|ENST00000623535|CDKL5;nc|ENSG00000008086|O76039-1|CDKL5;nc|ENSG00000181085|Q8TD08-2|MAPK15;nc|ENSG00000181085|Q8TD08-3|MAPK15;ENSG00000181085|ENST00000338033|MAPK15;nc|ENSG00000166484|Q13164-4|MAPK7;ENST00000570306.5_1_17:19283765-19285121:+|nuORF;nc|ENSG00000166484|Q13164-3|MAPK7;ENST00000490660.2_1_17:19282213-19285121:+|nuORF;nc|ENSG00000166484|Q13164-2|MAPK7;ENSG00000166484|ENST00000395604|MAPK7	ENSG00000008086|ENST00000623535|CDKL5;nc|ENSG00000166484|Q13164-4|MAPK7	ENSG00000008086|ENST00000623535|CDKL5	MULTI-SECPEP	A375_MHC_IP_R1	1	513.8538208007812	2	513.256174	1024.49779	-0.32055	-0.00016452	3.9704	0.0020378	3.6499	0.0018733	513.7609854134864	49.904	0.20512	49.904	49.793	49.998	0					5	3	2	0	0	0	0.93777	1	17673	17673		17.113	6.289	1	1443000			53502	951;7082	38886	39199	52242	52242					-0.013474031079113047
TEYVGMYFEPD	11	Unmodified	_TEYVGMYFEPD_					0	0	0			REV__ENST00000466047.5_1_10:121609046-121633060:-|nuORF	REV__ENST00000466047.5_1_10:121609046-121633060:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	451.25640869140625	3	450.8568	1349.54857	-0.1206	-5.4375E-05	0.15186	6.8467E-05	0.031256	1.4092E-05	450.856828194802	28.716	0.45429	28.716	28.491	28.945	0					20	8	4	0	0	0	0.99916	1	8909	8909		4.4062	0	1	4082100	+		53503	22312	38887	39200	52243	52243					-0.1122228663587066
TEYVSHYL	8	Unmodified	_TEYVSHYL_					0	0	0			REV__nc|ENSG00000086205|Q04609-10|FOLH1;REV__nc|ENSG00000086205|Q04609-3|FOLH1	REV__nc|ENSG00000086205|Q04609-10|FOLH1	MULTI-MSMS	A375_MHC_IP_R1	1	506.6426696777344	2	506.242732	1010.47091	-0.39309	-0.000199	0.17202	8.7086E-05	-0.22107	-0.00011191	506.24276126036256	81.378	1.065	81.378	80.846	81.911	0					27	20	2	0	0	0	0.7338	1	29708	29708		24.674	0	1	3369200	+		53504	16850;26644	38888	39201	52244	52244					-0.03390511719089773
TEYYDGKTRRY	11	Unmodified	_TEYYDGKTRRY_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	A375_MHC_IP_R1	1	484.96844482421875	3	484.568641	1450.68409	-0.47094	-0.0002282	0.10064	4.8766E-05	-0.3703	-0.00017944	484.56864591561975	19.293	0.23279	19.293	19.238	19.471	0					13	4	4	0	0	0	0.20854	1	4738	4738		53.798	49.392	1	47881000			53505	3064	38889	39202	52245	52245					-0.02322250730048836
TEYYDGKTRRY	11	Unmodified	_TEYYDGKTRRY_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-SECPEP	A375_MHC_IP_R1	1	364.2890625	4	363.6783	1450.68409	0.0087043	3.1656E-06	-0.15084	-5.4855E-05	-0.14213	-5.169E-05	363.92905594481323	19.302	0.18188	19.302	19.238	19.42	0					8	3	3	0	0	0	0.99607	1	4762	4762		8.2864	6.8313	1	11168000			53506	3064	38889	39202	52246	52246					-0.02322250730048836
TEYYDGKTRRY	11	Unmodified	_TEYYDGKTRRY_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	A375_MHC_IP_R2	2	484.968017578125	3	484.568641	1450.68409	-0.85734	-0.00041544	-0.29177	-0.00014138	-1.1491	-0.00055682	484.5684878499728	18.855	0.25997	19.458	19.423	19.683	0.60308					8	6	2	0	0	0	0.71778	1	5646	5646		14.171	11.736	1	88876000			53507	3064	38889	39202	52247	52247					-0.02322250730048836
TEYYDGKTRRY	11	Unmodified	_TEYYDGKTRRY_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MATCH	A375_MHC_IP_R2	2		4	363.6783	1450.68409	-0.32961	-0.00011987	-0.14618	-5.3161E-05	-0.47578	-0.00017303	363.6782383624543	18.855	0.20984	19.458	19.423	19.633	0.60308	0.078357	4.6011E-06	NaN	11.631	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26843000			53508	3064	38889	39202							-0.02322250730048836
TFAFLVGSQM	10	Unmodified	_TFAFLVGSQM_					0	0	0		ENSG00000135517|ENST00000652304|MIP	ENSG00000135517|ENST00000652304|MIP	ENSG00000135517|ENST00000652304|MIP	MSMS	A375_MHC_IP_R1	1	550.7105102539062	2	550.775885	1099.53722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.131	1	83.131	82.631	83.631	0								0	0	0	0.15207	1	30412	30412		13.906	2.2658	1				53509	4692	38890	39203	52248	52248					-0.008570191487024204
TFAIDHDIY	9	Unmodified	_TFAIDHDIY_					0	0	0			REV__nc|ENSG00000115705|P07202-4|TPO	REV__nc|ENSG00000115705|P07202-4|TPO	MSMS	A375_MHC_IP_R1	1	547.761474609375	2	547.761289	1093.50803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.92	1	117.92	117.42	118.42	0								0	0	0	0.15486	1	43354	43354		12.532	2.4576	1		+		53510	17908	38891	39204	52249	52249					-0.034988401733244245
TFAIIENLKY	10	Unmodified	_TFAIIENLKY_					0	0	0		C1GALT1C1|p.F157V|1|0.09|ENSG00000171155|chrX:120626698-120626698|A/C|missense_variant;ENSG00000171155|ENST00000304661|C1GALT1C1	C1GALT1C1|p.F157V|1|0.09|ENSG00000171155|chrX:120626698-120626698|A/C|missense_variant	C1GALT1C1|p.F157V|1|0.09|ENSG00000171155|chrX:120626698-120626698|A/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	405.28546142578125	3	404.560535	1210.65977	0.063079	2.5519E-05	0.11136	4.5053E-05	0.17444	7.0572E-05	404.5604686112725	64.613	0.40773	65.354	65.106	65.513	0.74022					18	7	4	0	0	0	0.93216	1	24521	24521		6.6304	0	1	1583400			53511	262	38892	39205	52250	52250					0.06287140854374229
TFALFPVFWL	10	Unmodified	_TFALFPVFWL_					0	0	0		ENST00000550505.5_2_12:117299165-117314498:-|nuORF	ENST00000550505.5_2_12:117299165-117314498:-|nuORF	ENST00000550505.5_2_12:117299165-117314498:-|nuORF	MSMS	A375_MHC_IP_R2	2	414.2804870605469	3	414.230349	1239.66922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.995	1	22.615	22.115	23.115	0.61932								0	0	0	0.15451	1	6962	6962		6.1918	1.4759	1				53512	13372	38893	39206	52251	52251					0.05896953930573545
TFCHAATLVFY	11	Unmodified	_TFCHAATLVFY_					0	0	0			REV__CON__Q3KUS7	REV__CON__Q3KUS7	MULTI-SECPEP	A375_MHC_IP_R2	2	637.1898803710938	2	636.807716	1271.60088	-0.77282	-0.00049214	0.36346	0.00023145	-0.40936	-0.00026068	636.808404141605	67.444	0.35708	68.18	67.951	68.308	0.73631					8	6	2	0	0	0	0.75408	1	25556	25556		34.402	10.381	1	1872300	+	+	53513	15884	38894	39207	52252	52252					-0.024056587115865113
TFCKGVTCIE	10	Unmodified	_TFCKGVTCIE_					0	0	0			REV__ENST00000478965.1_1_5:94161779-94162088:-|nuORF	REV__ENST00000478965.1_1_5:94161779-94162088:-|nuORF	MSMS	A375_MHC_IP_R1	1	550.687744140625	2	550.759378	1099.5042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.064	1	72.064	71.564	72.564	0								0	0	0	0.15158	1	26206	26206		14.838	3.198	1		+		53514	25225	38895	39208	52253	52253					-0.04156969263067367
TFDANTENHD	10	Unmodified	_TFDANTENHD_					0	0	0		C1QTNF7|p.G226E|2|0.45|ENSG00000163145|chr4:15442606-15442606|G/A|missense_variant	C1QTNF7|p.G226E|2|0.45|ENSG00000163145|chr4:15442606-15442606|G/A|missense_variant	C1QTNF7|p.G226E|2|0.45|ENSG00000163145|chr4:15442606-15442606|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	582.6674194335938	2	582.233624	1162.4527	-0.36542	-0.00021276	-1.4357	-0.00083589	-1.8011	-0.0010486	582.2325770027829	76.47	0.96278	77.211	76.792	77.755	0.74052					36	18	3	0	0	0	0.66308	2	28988	28988;29003		16.149	0.51092	1	5075400			53515	263	38896	39209	52254;52255	52254					-0.1220329843174568
TFDDDEMEV	9	Unmodified	_TFDDDEMEV_					0	0	0			REV__nc|ENSG00000153956|P54289-4|CACNA2D1	REV__nc|ENSG00000153956|P54289-4|CACNA2D1	MSMS	A375_MHC_IP_R2	2	550.616455078125	2	550.708062	1099.40157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.494	1	72.228	71.728	72.728	0.73421								0	0	0	0.15486	1	27122	27122		7.9102	1.187	1		+		53516	19858	38897	39210	52256	52256					-0.14415383520827163
TFDGEKLYQ	9	Unmodified	_TFDGEKLYQ_					0	0	0		nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;ENSG00000083807|ENST00000263093|SLC27A5	nc|ENSG00000083807|Q9Y2P5-2|SLC27A5	nc|ENSG00000083807|Q9Y2P5-2|SLC27A5	MULTI-SECPEP	A375_MHC_IP_R2	2	551.165771484375	2	550.766571	1099.51859	-1.0532	-0.00058007	0.29152	0.00016056	-0.76168	-0.00041951	550.7666270369922	38.111	0.56447	38.886	38.534	39.098	0.77451					18	10	3	0	0	0	0.16676	1	14021	14021		58.679	6.4105	1	5047600			53517	1787	38898	39211	52257	52257					-0.02718857518925688
TFDGERCLY	9	Unmodified	_TFDGERCLY_					0	0	0		nc|ENSG00000114626|Q969K4-3|ABTB1;ENSG00000114626|ENST00000232744|ABTB1;ABTB1|p.F297Lfs*6|1|0.2|ENSG00000114626|chr3:127677705-127677706|CC/-|frameshift_variant;ABTB1|p.F297Lfs*58|1|0.18|ENSG00000114626|chr3:127677702-127677703|-/CT|frameshift_variant;ENST00000464431.1_1_3:127394799-127394958:+|nuORF;ENST00000493365.5_1_3:127391868-127394958:+|nuORF;ENST00000479280.5_1_3:127391883-127395444:+|nuORF;ENST00000483857.5_1_3:127391815-127395444:+|nuORF;nc|ENSG00000114626|Q969K4-4|ABTB1	nc|ENSG00000114626|Q969K4-3|ABTB1;nc|ENSG00000114626|Q969K4-4|ABTB1	nc|ENSG00000114626|Q969K4-3|ABTB1	MULTI-MSMS	A375_MHC_IP_R1	1	553.6922607421875	2	552.244949	1102.47534	-0.77707	-0.00042913	0.036589	2.0206E-05	-0.74048	-0.00040893	552.2449968541498	36.426	1.0632	36.426	35.982	37.045	0					68	20	5	0	0	0	0.46038	1	12110	12110		21.747	0	1	28565000			53518	3231;14556	38899	39212	52258	52258					-0.07179370567814658
TFDMEDEYMLG	11	Unmodified	_TFDMEDEYMLG_					0	0	0		ENSG00000214013|ENST00000318010|GANC	ENSG00000214013|ENST00000318010|GANC	ENSG00000214013|ENST00000318010|GANC	MSMS	A375_MHC_IP_R1	1	675.703857421875	2	675.765054	1349.51555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.44	1	67.44	66.94	67.94	0								0	0	0	0.16179	1	24439	24439		9.3831	0	1				53519	9597	38900	39213	52259	52259					-0.14522236750235606
TFDPDNLE	8	Unmodified	_TFDPDNLE_					0	0	0		ENSG00000182154|ENST00000371443|MRPL41	ENSG00000182154|ENST00000371443|MRPL41	ENSG00000182154|ENST00000371443|MRPL41	MSMS	A375_MHC_IP_R2	2	475.6767578125	2	475.708722	949.402892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.267	1	58.016	57.516	58.516	0.74894								0	0	0	0.16876	1	21652	21652		9.3474	1.4373	1				53520	8379	38901	39214	52260	52260					-0.07383381369754716
TFDTRNCKM	9	Unmodified	_TFDTRNCKM_					0	0	0			REV__ENST00000339438.10_1_1:115292797-115300553:-|nuORF	REV__ENST00000339438.10_1_1:115292797-115300553:-|nuORF	MSMS	A375_MHC_IP_R1	1	558.135009765625	2	558.252251	1114.48995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.586	1	75.586	75.086	76.086	0								0	0	0	0.12568	1	27539	27539		34.102	13.649	1		+		53521	23709	38902	39215	52261	52261					-0.06271621691348628
TFDTYIGQGY	10	Unmodified	_TFDTYIGQGY_					0	0	0		nc|ENSG00000122642|O95302-2|FKBP9;ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000489038.5_1_7:33016023-33032371:+|nuORF;ENST00000494374.5_1_7:32997059-33028356:+|nuORF	nc|ENSG00000122642|O95302-2|FKBP9	nc|ENSG00000122642|O95302-2|FKBP9	MULTI-SECPEP	A375_MHC_IP_R1	1	583.1641845703125	2	582.764029	1163.5135	-0.25086	-0.00014619	0.13311	7.7571E-05	-0.11775	-6.862E-05	582.7639964522995	75.767	1.1598	75.767	75.362	76.522	0					30	11	4	0	0	0	0.52461	1	27584	27584		36.127	0	1	6824400			53522	3795	38903	39216	52262	52262					-0.061711613815077726
TFDVGNEDLY	10	Unmodified	_TFDVGNEDLY_					0	0	0			REV__MYO16|p.L209F|1|0.29|ENSG00000041515|chr13:108793592-108793592|A/T|missense_variant	REV__MYO16|p.L209F|1|0.29|ENSG00000041515|chr13:108793592-108793592|A/T|missense_variant	MSMS	A375_MHC_IP_R2	2	586.7029418945312	2	586.758943	1171.50333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.892	1	58.641	58.141	59.141	0.74894								0	0	0	0.15105	1	21895	21895		15.847	0	1		+		53523	27066	38904	39217	52263	52263					-0.07555769106738808
TFEDVAVHFSW	11	Unmodified	_TFEDVAVHFSW_					0	0	0		ENSG00000179909|ENST00000684351|ZNF154	ENSG00000179909|ENST00000684351|ZNF154	ENSG00000179909|ENST00000684351|ZNF154	MULTI-SECPEP	A375_MHC_IP_R2	2	668.76025390625	2	669.311677	1336.6088	-0.80829	-0.000541	-2.2857	-0.0015298	-3.094	-0.0020708	669.3090990836971	75.295	0.20375	76.034	75.924	76.128	0.73953					5	3	2	0	0	0	0.98591	1	28605	28605		1.1933	0	1	1218100			53524	8260	38905	39218	52264	52264					-0.046038081904725914
TFEEGIKRP	9	Unmodified	_TFEEGIKRP_					0	0	0		ENST00000554429.5_1_14:45565874-45579180:+|nuORF;ENST00000424478.5_1_14:45565874-45584113:+|nuORF;ENSG00000185246|ENST00000355765|PRPF39	ENST00000554429.5_1_14:45565874-45579180:+|nuORF	ENST00000554429.5_1_14:45565874-45579180:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	360.2388610839844	3	359.529346	1075.56621	0.098901	3.5558E-05	-0.022152	-7.9644E-06	0.076749	2.7593E-05	359.52912809697557	25.277	0.76186	25.277	25.104	25.866	0					46	14	4	0	0	0	0.65748	1	7384	7384		10.8	0.64894	1	26411000			53525	8651	38906	39219	52265	52265					0.03144841471953441
TFELYEEFL	9	Unmodified	_TFELYEEFL_					0	0	0		nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A	nc|ENSG00000066933|B2RTY4-5|MYO9A	nc|ENSG00000066933|B2RTY4-5|MYO9A	MULTI-MSMS	A375_MHC_IP_R2	2	397.5803527832031	3	397.525379	1189.55431	-0.43683	-0.00017365	-1.6592	-0.00065958	-2.096	-0.00083323	397.52470867046827	21.64	0.30604	22.259	22.03	22.336	0.61932					7	5	2	0	0	0	0.69674	1	6792	6792		7.609	1.8255	1	1640700			53526	1423	38907	39220	52266	52266					-0.032888200619026975
TFEVEEANYT	10	Unmodified	_TFEVEEANYT_					0	0	0			REV__ENST00000572438.1_1_17:4802033-4804946:-|nuORF	REV__ENST00000572438.1_1_17:4802033-4804946:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	602.1636962890625	2	601.764226	1201.5139	-0.27418	-0.00016499	0.48516	0.00029195	0.21099	0.00012696	601.7642046677145	50.042	0.7678	50.042	49.743	50.51	0					39	14	4	0	0	0	0.21617	1	17678	17678		47.594	14.809	1	18042000	+		53527	17537	38908	39221	52267	52267					-0.07879786452326698
TFEVEEANYT	10	Unmodified	_TFEVEEANYT_					0	0	0			REV__ENST00000572438.1_1_17:4802033-4804946:-|nuORF	REV__ENST00000572438.1_1_17:4802033-4804946:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	602.1636962890625	2	601.764226	1201.5139	-0.77014	-0.00046344	0.76859	0.00046251	-0.0015459	-9.3027E-07	601.7642705299115	49.458	0.70822	50.215	49.894	50.602	0.75737					38	13	4	0	0	0	0.41205	1	18537	18537		33.445	3.6043	1	19916000	+		53528	17537	38908	39221	52268	52268					-0.07879786452326698
TFEVEEANYT	10	Unmodified	_TFEVEEANYT_					0	0	0			REV__ENST00000572438.1_1_17:4802033-4804946:-|nuORF	REV__ENST00000572438.1_1_17:4802033-4804946:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	601.764226	1201.5139	-0.27418	-0.00016499	0.48516	0.00029195	0.21099	0.00012696	601.7642046677145	50.042	0.7678	50.042	49.743	50.51	0	-0.086583	-0.00011502	NaN	47.594	39	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18042000	+		53529	17537	38908	39221							-0.07879786452326698
TFEYILIDNFN	11	Unmodified	_TFEYILIDNFN_					0	0	0		tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1	tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1	tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	695.239990234375	2	694.840268	1387.66598	-0.4278	-0.00029725	-0.15235	-0.00010586	-0.58015	-0.00040311	694.8400736898001	70.306	0.56235	70.306	69.983	70.545	0					24	10	3	0	0	0	0.49816	1	25496	25496		31.268	6.2774	1	3313900			53530	29434	38909	39222	52269	52269					-0.012343857047426354
TFEYILIDNFN	11	Unmodified	_TFEYILIDNFN_					0	0	0		tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1	tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1	tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	695.2394409179688	2	694.840268	1387.66598	-0.60585	-0.00042097	-0.34652	-0.00024077	-0.95237	-0.00066174	695.3415551915183	69.578	0.56068	70.312	70.081	70.642	0.73421					26	10	3	0	0	0	0.45155	1	26367	26367		34.932	3.6637	1	4376900			53531	29434	38909	39222	52270	52270					-0.012343857047426354
TFEYILIDNFN	11	Unmodified	_TFEYILIDNFN_					0	0	0		tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1	tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1	tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	694.840268	1387.66598	-0.4278	-0.00029725	-0.15235	-0.00010586	-0.58015	-0.00040311	694.8400736898001	70.306	0.56235	70.306	69.983	70.545	0	-0.0029551	0.00012017	NaN	34.932	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3313900			53532	29434	38909	39222							-0.012343857047426354
TFEYILIDNFN	11	Unmodified	_TFEYILIDNFN_					0	0	0		tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1	tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1	tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	694.840268	1387.66598	-0.60585	-0.00042097	-0.34652	-0.00024077	-0.95237	-0.00066174	695.3415551915183	69.578	0.56068	70.312	70.081	70.642	0.73421	0.0029551	-0.00014967	NaN	34.932	26	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4376900			53533	29434	38909	39222							-0.012343857047426354
TFFAIKERF	9	Unmodified	_TFFAIKERF_					0	0	0			REV__ENSG00000047644|ENST00000380861|WWC3	REV__ENSG00000047644|ENST00000380861|WWC3	MSMS	A375_MHC_IP_R2	2	386.9241943359375	3	386.88172	1157.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.877	1	24.507	24.007	25.007	0.63014								0	0	0	0.13927	1	7752	7752		29.841	14.592	1		+		53534	16362	38910	39223	52271	52271					0.050823087483195195
TFFKKKKKK	9	Unmodified	_TFFKKKKKK_					0	0	0		ENST00000487395.1_1_6:102376237-102441071:+|nuORF	ENST00000487395.1_1_6:102376237-102441071:+|nuORF	ENST00000487395.1_1_6:102376237-102441071:+|nuORF	MSMS	A375_MHC_IP_R1	1	394.7466735839844	3	394.928893	1181.76485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.3574	1	7.3574	6.8574	7.8574	0								0	0	0	0.15486	1	1681	1681		0.26902	0.12913	1				53535	12596	38911	39224	52272	52272					0.18123726841440657
TFFKKKKKK	9	Unmodified	_TFFKKKKKK_					0	0	0		ENST00000487395.1_1_6:102376237-102441071:+|nuORF	ENST00000487395.1_1_6:102376237-102441071:+|nuORF	ENST00000487395.1_1_6:102376237-102441071:+|nuORF	MSMS	A375_MHC_IP_R2	2	394.7467956542969	3	394.928893	1181.76485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.509	1	12.007	11.507	12.507	0.49811								0	0	0	0.15486	1	3569	3569		0.26902	0.26902	1				53536	12596	38911	39224	52273	52273					0.18123726841440657
TFFVWNTRYE	10	Unmodified	_TFFVWNTRYE_					0	0	0		ENST00000570041.1_2_16:53532500-53534232:-|nuORF	ENST00000570041.1_2_16:53532500-53534232:-|nuORF	ENST00000570041.1_2_16:53532500-53534232:-|nuORF	MSMS	A375_MHC_IP_R1	1	681.628173828125	2	681.827495	1361.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.32	1	137.32	136.82	137.82	0								0	0	0	0.15531	1	52861	52861		3.5965	0.31518	1				53537	13599	38912	39225	52274	52274					-0.025918154365172086
TFFYRMSHSG	10	Unmodified	_TFFYRMSHSG_					0	0	0			REV__ENST00000496081.5_1_6:29910330-29912419:+|nuORF	REV__ENST00000496081.5_1_6:29910330-29912419:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	411.9220275878906	3	411.522086	1231.54443	0.020123	8.2809E-06	-0.064742	-2.6643E-05	-0.04462	-1.8362E-05	411.5220407126715	53.249	0.50714	53.249	52.946	53.453	0					17	9	3	0	0	0	0.71175	1	18991	18991		7.0371	1.5138	1	2244200	+		53538	22596	38913	39226	52275	52275					-0.06208286548280739
TFGALSSVRK	10	Unmodified	_TFGALSSVRK_					0	0	0			REV__ENST00000560849.2_2_15:50868060-50878706:-|nuORF	REV__ENST00000560849.2_2_15:50868060-50878706:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	533.7052612304688	2	533.306198	1064.59784	-0.62075	-0.00033105	-0.97582	-0.00052041	-1.5966	-0.00085146	533.3055621993318	47.442	0.66473	47.442	47.003	47.668	0					30	12	4	0	0	0	0.91556	1	16681	16681		14.838	0.93222	1	26162000	+		53539	16971	38914	39227	52276	52276					0.06812834225888764
TFGDDCEC	8	Unmodified	_TFGDDCEC_					0	0	0			REV__nc|ENSG00000041982|P24821-4|TNC	REV__nc|ENSG00000041982|P24821-4|TNC	MSMS	A375_MHC_IP_R2	2	445.14251708984375	2	445.138761	888.262969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.902	1	34.654	34.154	35.154	0.75225								0	0	0	0.16876	1	12180	12180		2.5775	0	1		+		53540	16345	38915	39228	52277	52277					-0.18563204970143943
TFGERVVAF	9	Unmodified	_TFGERVVAF_					0	0	0		RRM2B|p.K180I|1|0.22|ENSG00000048392|chr8:102224057-102224057|T/A|missense_variant;nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B	RRM2B|p.K180I|1|0.22|ENSG00000048392|chr8:102224057-102224057|T/A|missense_variant	RRM2B|p.K180I|1|0.22|ENSG00000048392|chr8:102224057-102224057|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	513.629638671875	2	513.274367	1024.53418	-0.4962	-0.00025468	0.0034504	1.771E-06	-0.49275	-0.00025291	513.2743427090362	73.766	2.077	73.766	73.336	75.413	0					76	40	2	0	0	0	0.052747	1	27047	27047		63.227	30.442	1	46953000			53541	1212	38916	39229	52278	52278					0.02289473788800933
TFGERVVAF	9	Unmodified	_TFGERVVAF_					0	0	0		RRM2B|p.K180I|1|0.22|ENSG00000048392|chr8:102224057-102224057|T/A|missense_variant;nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B	RRM2B|p.K180I|1|0.22|ENSG00000048392|chr8:102224057-102224057|T/A|missense_variant	RRM2B|p.K180I|1|0.22|ENSG00000048392|chr8:102224057-102224057|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	513.673828125	2	513.274367	1024.53418	-0.78563	-0.00040324	0.12596	6.465E-05	-0.65967	-0.00033859	513.2744041514421	72.884	2.2898	73.619	73.124	75.413	0.7354					73	44	2	0	0	0	0.020087	1	27568	27568		83.429	43.471	1	40514000			53542	1212	38916	39229	52279	52279					0.02289473788800933
TFGGNKLY	8	Unmodified	_TFGGNKLY_					0	0	0		ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	MULTI-MSMS	A375_MHC_IP_R2	2	450.6814270019531	2	450.23471	898.454868	-0.47967	-0.00021597	-0.13025	-5.8642E-05	-0.60992	-0.00027461	450.23465324117336	41.279	0.81379	42.053	41.845	42.659	0.77451					27	15	3	0	0	0	0.69583	1	15328	15328		36.044	12.896	1	3369700			53543	3443	38917	39230	52280	52280					0.0015782683465204173
TFGHASKQCF	10	Unmodified	_TFGHASKQCF_					0	0	0			REV__ENSG00000188107|ENST00000503581|EYS	REV__ENSG00000188107|ENST00000503581|EYS	MULTI-MSMS	A375_MHC_IP_R1	1	1126.58984375	1	1125.51459	1124.50731	0.088109	9.9168E-05	-1.8416	-0.0020728	-1.7535	-0.0019736	1125.5104121083161	103.81	1.2726	103.81	103.17	104.44	0					39	24	3	0	0	0	0.70925	1	38061	38061		8.1555	0.24537	1	6513300	+		53544	22073	38918	39231	52281	52281					-0.04995958094036723
TFGHASKQCF	10	Unmodified	_TFGHASKQCF_					0	0	0			REV__ENSG00000188107|ENST00000503581|EYS	REV__ENSG00000188107|ENST00000503581|EYS	MULTI-MATCH	A375_MHC_IP_R2	2		1	1125.51459	1124.50731	0.14095	0.00015864	-3.092	-0.0034801	-2.951	-0.0033214	1125.5091288090637	103.2	0.81449	103.97	103.48	104.3	0.76429	0.081467	-0.0007271	NaN	8.1555	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5508600	+		53545	22073	38918	39231							-0.04995958094036723
TFGLLQSDWI	10	Unmodified	_TFGLLQSDWI_					0	0	0			REV__ENSG00000257335|ENST00000475668|MGAM	REV__ENSG00000257335|ENST00000475668|MGAM	MULTI-MSMS	A375_MHC_IP_R1	1	394.2728576660156	3	393.873001	1178.59717	-0.26042	-0.00010257	0.51648	0.00020343	0.25606	0.00010086	393.87311526450037	38.314	0.86538	38.314	38.067	38.933	0					25	12	3	0	0	0	0.6806	1	13015	13015		8.9762	0.53194	1	4430100	+		53546	22890	38919	39232	52282	52282					0.015019947861901528
TFGMFKYKIL	10	Unmodified	_TFGMFKYKIL_					0	0	0		ENST00000464583.5_1_6:4119386-4125894:-|nuORF	ENST00000464583.5_1_6:4119386-4125894:-|nuORF	ENST00000464583.5_1_6:4119386-4125894:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	624.7452392578125	2	624.346477	1246.6784	-0.9019	-0.0005631	-0.76242	-0.00047601	-1.6643	-0.0010391	624.3458573676137	67.912	0.45451	67.912	67.603	68.057	0					11	8	2	0	0	0	0.8125	1	24632	24632		13.042	0	1	1712200			53547	12228	38920	39233	52283	52283					0.06492979224594819
TFGYEYVTV	9	Unmodified	_TFGYEYVTV_					0	0	0		nc|ENSG00000110911|P49281-5|SLC11A2;ENSG00000110911|ENST00000262052|SLC11A2;nc|ENSG00000110911|P49281|SLC11A2;nc|ENSG00000110911|P49281-3|SLC11A2;nc|ENSG00000110911|P49281-4|SLC11A2	nc|ENSG00000110911|P49281-5|SLC11A2	nc|ENSG00000110911|P49281-5|SLC11A2	MULTI-MSMS	A375_MHC_IP_R1	1	540.2162475585938	2	539.758215	1077.50188	-0.44925	-0.00024249	-0.30181	-0.0001629	-0.75106	-0.00040539	539.7585021073581	43.223	0.45913	43.223	42.891	43.351	0					12	8	2	0	0	0	0.58047	1	15049	15049		15.847	1.0089	1	715170			53548	2956	38921	39234	52284	52284					-0.03377358404873121
TFHDHALMI	9	Unmodified	_TFHDHALMI_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	A375_MHC_IP_R2	2	362.4677734375	3	362.17966	1083.51715	-0.13195	-4.7789E-05	-0.62954	-0.00022801	-0.76149	-0.0002758	362.1795764871432	48.408	0.40293	49.166	48.98	49.383	0.75736					16	7	3	0	0	0	0.4867	1	18182	18182		14.405	7.775	1	1539900			53549	9304	38922	39235	52285	52285					-0.021267700886483
TFHRTYDY	8	Unmodified	_TFHRTYDY_					0	0	0			REV__ENSG00000144848|ENST00000283290|ATG3	REV__ENSG00000144848|ENST00000283290|ATG3	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1503295898438	2	551.751256	1101.48796	-0.98566	-0.00054384	0.54139	0.00029871	-0.44427	-0.00024513	551.7512631091417	41.197	0.7614	41.972	41.743	42.504	0.77451					19	14	2	0	0	0	0.96184	1	15286	15286		23.148	11.508	1	3267300	+		53550	19451	38923	39236	52286	52286					-0.058725911133024056
TFHSENCDW	9	Unmodified	_TFHSENCDW_					0	0	0		PLXNA2|p.R46C|1|0.11|ENSG00000076356|chr1:208217787-208217787|G/A|missense_variant	PLXNA2|p.R46C|1|0.11|ENSG00000076356|chr1:208217787-208217787|G/A|missense_variant	PLXNA2|p.R46C|1|0.11|ENSG00000076356|chr1:208217787-208217787|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	380.1133117675781	3	380.146796	1137.41856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.603	1	60.35	59.85	60.85	0.74714								0	0	0	0.15486	1	22556	22556		2.7352	1.6637	1				53551	15201	38924	39237	52287	52287					-0.1446541812435953
TFIGLERSTKR	11	Unmodified	_TFIGLERSTKR_					0	0	0			REV__tr|U7T073|U7T073_FUSNUPhenylalanine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheTPE=3SV=1	REV__tr|U7T073|U7T073_FUSNUPhenylalanine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheTPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	436.9852294921875	3	436.585854	1306.73573	-0.39584	-0.00017282	-0.5285	-0.00023074	-0.92434	-0.00040355	436.9199828156949	132.34	0.86432	132.34	132.13	133	0					22	16	2	0	0	0	0.73807	1	51032	51032		1.2148	0	1	3120400	+		53552	28669	38925	39238	52288	52288					0.09463537754481877
TFIGLERSTKR	11	Unmodified	_TFIGLERSTKR_					0	0	0			REV__tr|U7T073|U7T073_FUSNUPhenylalanine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheTPE=3SV=1	REV__tr|U7T073|U7T073_FUSNUPhenylalanine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheTPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	436.9852294921875	3	436.585854	1306.73573	-0.39584	-0.00017282	-0.5285	-0.00023074	-0.92434	-0.00040355	436.9199828156949	132.34	0.86432	132.34	132.13	133	0					22	16	2	0	0	0	1.0012	1	51032	51032		1.2148	0	1	3120400	+		53553	28669	38925	39238	52289	52289					0.09463537754481877
TFINQFRKP	9	Unmodified	_TFINQFRKP_					0	0	0			REV__ENSG00000175294|ENST00000312106|CATSPER1	REV__ENSG00000175294|ENST00000312106|CATSPER1	MULTI-MSMS	A375_MHC_IP_R1	1	384.6182556152344	3	384.217102	1149.62948	0.46442	0.00017844	0.83983	0.00032268	1.3043	0.00050112	384.2181135423077	20.824	0.96834	20.824	20.587	21.555	0					46	18	4	0	0	0	0.64808	1	5403	5403		7.609	0	1	3126800	+		53554	21336	38926	39239	52290	52290					0.060648269798548426
TFKDLEGNNL	10	Unmodified	_TFKDLEGNNL_					0	0	0		PCDH19|p.S903N|1|0.38|ENSG00000165194|chrX:100342043-100342043|C/T|missense_variant	PCDH19|p.S903N|1|0.38|ENSG00000165194|chrX:100342043-100342043|C/T|missense_variant	PCDH19|p.S903N|1|0.38|ENSG00000165194|chrX:100342043-100342043|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	575.654541015625	2	575.790578	1149.5666	-0.23808	-0.00013709	-0.86699	-0.0004992	-1.1051	-0.00063629	576.2917419936632	74.63	0.66224	75.367	75.009	75.671	0.73752					16	12	2	0	0	0	0.90513	1	28427	28427		2.4985	1.0166	1	2527900			53555	15119	38927	39240	52291	52291					-0.002197835988681618
TFKEWSGHLDY	11	Unmodified	_TFKEWSGHLDY_					0	0	0			REV__OVGP1|p.R221K|1|0.25|ENSG00000085465|chr1:111421620-111421620|C/T|missense_variant	REV__OVGP1|p.R221K|1|0.25|ENSG00000085465|chr1:111421620-111421620|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	691.7523193359375	2	691.822409	1381.63027	-0.77393	-0.00053542	-4.4333	-0.003067	-5.2072	-0.0036025	692.3198018344291	86.785	0.40528	86.785	86.527	86.933	0					19	7	3	0	0	0	0.72649	1	31779	31779		12.241	1.4411	1	3004300	+		53556	27708	38928	39241	52292	52292					-0.045284231617642945
TFKHQSYKAHY	11	Unmodified	_TFKHQSYKAHY_					0	0	0		THSD7B|p.H288Y|1|0.41|ENSG00000144229|chr2:137057142-137057142|C/T|missense_variant	THSD7B|p.H288Y|1|0.41|ENSG00000144229|chr2:137057142-137057142|C/T|missense_variant	THSD7B|p.H288Y|1|0.41|ENSG00000144229|chr2:137057142-137057142|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	471.1127014160156	3	470.570204	1408.68878	-0.24482	-0.0001152	-0.17572	-8.269E-05	-0.42054	-0.00019789	470.5699971990427	44.191	0.30853	44.191	44.01	44.318	0					9	5	2	0	0	0	0.99482	1	15361	15361		9.2438	7.1598	1	1109000			53557	29340	38929	39242	52293	52293					0.0007867820336286968
TFKHQSYKAHY	11	Unmodified	_TFKHQSYKAHY_					0	0	0		THSD7B|p.H288Y|1|0.41|ENSG00000144229|chr2:137057142-137057142|C/T|missense_variant	THSD7B|p.H288Y|1|0.41|ENSG00000144229|chr2:137057142-137057142|C/T|missense_variant	THSD7B|p.H288Y|1|0.41|ENSG00000144229|chr2:137057142-137057142|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	470.570204	1408.68878	-0.4559	-0.00021453	1.6143	0.00075963	1.1584	0.00054509	470.9048567034459	43.333	0.30511	44.105	43.926	44.231	0.7724	-0.042738	0.0023099	NaN	9.2438	13	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	982400			53558	29340	38929	39242							0.0007867820336286968
TFKKIKRRVKK	11	Unmodified	_TFKKIKRRVKK_					0	0	0		SART1|p.T402I|1|0.05|ENSG00000175467|chr11:65967275-65967275|C/T|missense_variant	SART1|p.T402I|1|0.05|ENSG00000175467|chr11:65967275-65967275|C/T|missense_variant	SART1|p.T402I|1|0.05|ENSG00000175467|chr11:65967275-65967275|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	716.3843383789062	2	716.485363	1430.95617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.34	1	135.34	134.84	135.84	0								0	0	0	0.1636	1	52182	52182		0	0	1				53559	29107	38930	39243	52294	52294					0.2579322787255478
TFKLRRIEEER	11	Unmodified	_TFKLRRIEEER_					0	0	0			REV__tr|U7T489|U7T489_FUSNUFlagellarFliJproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00297PE=4SV=1	REV__tr|U7T489|U7T489_FUSNUFlagellarFliJproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00297PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	493.34722900390625	3	492.947563	1475.82086	-0.44336	-0.00021855	-0.080441	-3.9653E-05	-0.5238	-0.00025821	492.947289644323	40.091	0.45934	40.091	39.845	40.304	0					15	8	3	0	0	0	0.73715	1	13779	13779		2.084	0.86914	1	2951400	+		53560	28795	38931	39244	52295	52295					0.10198283220324811
TFKRILSKI	9	Unmodified	_TFKRILSKI_					0	0	0			REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61	REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61	MSMS	A375_MHC_IP_R2	2	369.25762939453125	3	369.241248	1104.70191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.283	1	38.054	37.554	38.554	0.7709								0	0	0	0.15486	1	13632	13632		2.2828	0.19677	1		+		53561	16902	38932	39245	52296	52296					0.15375161053407282
TFKTEERYL	9	Unmodified	_TFKTEERYL_					0	0	0			REV__ENSG00000115020|ENST00000264380|PIKFYVE	REV__ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-SECPEP	A375_MHC_IP_R2	2	593.2010498046875	2	593.808771	1185.60299	-0.56785	-0.00033719	-0.036666	-2.1772E-05	-0.60451	-0.00035897	593.8086712383745	77.855	0.41065	78.598	78.365	78.776	0.74293					9	7	2	0	0	0	0.65246	1	29540	29540		10.824	0	1	1057800	+		53562	17852	38933	39246	52297	52297					0.017610932978641358
TFKYVFDF	8	Unmodified	_TFKYVFDF_					0	0	0		ENST00000481284.5_1_20:33462930-33515014:+|nuORF;ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	356.5975646972656	3	356.179654	1065.51713	-0.6135	-0.00021852	4.1112	0.0014643	3.4977	0.0012458	356.18196767136493	26.34	0.45803	27	26.754	27.212	0.65992					11	8	2	0	0	0	0.91495	1	8983	8983		5.7319	0	1	1213600			53563	4308	38934	39247	52298	52298					-0.013004468170265682
TFLANIRHW	9	Unmodified	_TFLANIRHW_					0	0	0		nc|ENSG00000179902|Q5T5A4-2|CFAP276;ENSG00000179902|ENST00000369948|CFAP276	nc|ENSG00000179902|Q5T5A4-2|CFAP276	nc|ENSG00000179902|Q5T5A4-2|CFAP276	MULTI-SECPEP	A375_MHC_IP_R2	2	387.2839050292969	3	386.545331	1156.61416	-0.40946	-0.00015828	-0.43355	-0.00016759	-0.84301	-0.00032586	386.54512376644726	19.125	0.50312	19.728	19.533	20.037	0.60308					17	9	2	0	0	0	0.80101	1	5728	5728		1.0715	0	1	17066000			53564	8259	38935	39248	52299	52299					0.04211960182669827
TFLPVSLRW	9	Unmodified	_TFLPVSLRW_					0	0	0		ENST00000522299.5_1_8:27456094-27456136:-|nuORF	ENST00000522299.5_1_8:27456094-27456136:-|nuORF	ENST00000522299.5_1_8:27456094-27456136:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	373.9499206542969	3	373.550082	1117.62842	0.31915	0.00011922	-0.34516	-0.00012893	-0.026009	-9.7155E-06	373.55003641502265	80.8	0.35792	81.545	81.315	81.673	0.74474					11	6	2	0	0	0	0.58047	1	30694	30694		10.8	1.8233	1	1214600			53565	13022	38936	39249	52300	52300					0.07430612610937715
TFLRAKIKF	9	Unmodified	_TFLRAKIKF_					0	0	0		tr|U7SKI2|U7SKI2_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02039PE=4SV=1	tr|U7SKI2|U7SKI2_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02039PE=4SV=1	tr|U7SKI2|U7SKI2_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02039PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	374.95379638671875	3	375.237726	1122.69135	0.43944	0.00016489	0.59639	0.00022379	1.0358	0.00038868	375.2377932443455	37.289	0.45665	37.289	36.945	37.402	0					13	8	2	0	0	0	0.80535	1	12589	12589		2.2828	2.2828	1	1404500			53566	29473	38937	39250	52301	52301					0.13491178398976444
TFLSHHRPAL	10	Unmodified	_TFLSHHRPAL_					0	0	0			REV__ENST00000291547.9_1_21:44394763-44427647:+|nuORF	REV__ENST00000291547.9_1_21:44394763-44427647:+|nuORF	MSMS	A375_MHC_IP_R2	2	393.6012878417969	3	393.552485	1177.63563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.557	1	38.328	37.828	38.828	0.7709								0	0	0	0.15207	1	13752	13752		8.4443	0.83535	1		+		53567	23364	38938	39251	52302	52302					0.05391345211364751
TFLSQPRTL	9	Unmodified	_TFLSQPRTL_					0	0	0		ENST00000009105.5_1_1:209782395-209783261:+|nuORF	ENST00000009105.5_1_1:209782395-209783261:+|nuORF	ENST00000009105.5_1_1:209782395-209783261:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	532.4620361328125	2	531.800749	1061.58694	-0.71307	-0.00037921	0.98579	0.00052425	0.27272	0.00014503	531.8011042714984	80.6	0.76287	81.345	80.91	81.673	0.74474					21	14	2	0	0	0	0.43707	1	30577	30577		36.044	9.1605	1	2114200			53568	10060	38939	39252	52303	52303					0.05861431851622001
TFLVSHRKL	9	Unmodified	_TFLVSHRKL_					0	0	0		nc|ENSG00000040199|Q6ZVD8-2|PHLPP2;ENSG00000040199|ENST00000568954|PHLPP2;nc|ENSG00000040199|Q6ZVD8-3|PHLPP2	nc|ENSG00000040199|Q6ZVD8-2|PHLPP2	nc|ENSG00000040199|Q6ZVD8-2|PHLPP2	MULTI-SECPEP	A375_MHC_IP_R2	2	366.9550476074219	3	367.557348	1099.65021	0.065193	2.3962E-05	0.026662	9.8E-06	0.091856	3.3762E-05	367.5573528013526	48.818	0.45986	49.575	49.332	49.792	0.75737					11	8	2	0	0	0	0.75466	1	18415	18415		0.96228	0	1	1919000			53569	1163	38940	39253	52304	52304					0.10437417359503343
TFMTDDDME	9	Unmodified	_TFMTDDDME_					0	0	0			REV__nc|ENSG00000008869|Q9P2D3-3|HEATR5B	REV__nc|ENSG00000008869|Q9P2D3-3|HEATR5B	MSMS	A375_MHC_IP_R2	2	552.5955200195312	2	552.69664	1103.37873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.787	1	53.538	53.038	54.038	0.75105								0	0	0	0.15486	1	19904	19904		4.756	0	1		+		53570	16181	38941	39254	52305	52305					-0.16882725909954388
TFNFWVRFRPN	11	Unmodified	_TFNFWVRFRPN_					0	0	0			REV__ENSG00000186094|ENST00000371839|AGBL4	REV__ENSG00000186094|ENST00000371839|AGBL4	MULTI-MSMS	A375_MHC_IP_R2	2	495.32379150390625	3	495.257961	1482.75205	-0.56105	-0.00027786	1.4951	0.00074045	0.93402	0.00046258	495.2586791514182	45.157	0.30206	45.922	45.746	46.048	0.76519					9	5	2	0	0	0	0.73658	1	16882	16882		2.6312	0.19645	1	2615100	+		53571	21945	38942	39255	52306	52306					0.02998663711264271
TFNGKYTQFI	10	Unmodified	_TFNGKYTQFI_					0	0	0			REV__TMEM108|p.I219T|1|0.31|ENSG00000144868|chr3:133380367-133380367|T/C|missense_variant	REV__TMEM108|p.I219T|1|0.31|ENSG00000144868|chr3:133380367-133380367|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	407.276611328125	3	406.876634	1217.60807	-0.2661	-0.00010827	0.44643	0.00018164	0.18033	7.3374E-05	406.87662751383664	37.535	0.61322	38.306	38.07	38.684	0.7709					27	11	3	0	0	0	0.70651	1	13773	13773		5.4027	0.35519	1	3630200	+		53572	28129	38943	39256	52307	52307					0.007973971604542385
TFQDDCYK	8	Unmodified	_TFQDDCYK_					0	0	0		BACE1|p.S376F|1|0.38|ENSG00000186318|chr11:117290625-117290625|G/A|missense_variant	BACE1|p.S376F|1|0.38|ENSG00000186318|chr11:117290625-117290625|G/A|missense_variant	BACE1|p.S376F|1|0.38|ENSG00000186318|chr11:117290625-117290625|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	510.1836242675781	2	510.210575	1018.4066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.794	1	64.794	64.294	65.294	0								0	0	0	0.16876	1	23450	23450		8.5933	1.304	1				53573	224	38944	39257	52308	52308					-0.10187034867556122
TFQDFNWY	8	Unmodified	_TFQDFNWY_					0	0	0		ENSG00000186567|ENST00000358777|CEACAM19;nc|ENSG00000186567|Q7Z692|CEACAM19;ENST00000480278.5_1_19:45175875-45176985:+|nuORF;nc|ENSG00000186567|Q7Z692-2|CEACAM19	ENSG00000186567|ENST00000358777|CEACAM19	ENSG00000186567|ENST00000358777|CEACAM19	MSMS	A375_MHC_IP_R1	1	560.7277221679688	2	560.740357	1119.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.745	1	79.745	79.245	80.245	0								0	0	0	0.16876	1	29111	29111		10.183	0	1				53574	8760	38945	39258	52309	52309					-0.08879395861845296
TFQFQAILL	9	Unmodified	_TFQFQAILL_					0	0	0		ENST00000572019.1_1_17:5319973-5322970:-|nuORF	ENST00000572019.1_1_17:5319973-5322970:-|nuORF	ENST00000572019.1_1_17:5319973-5322970:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	541.3624267578125	2	540.808042	1079.60153	-0.62698	-0.00033908	-2.8685	-0.0015513	-3.4955	-0.0018904	540.8052137513971	75.127	0.3534	75.127	74.958	75.312	0					7	6	2	0	0	0	0.68046	1	27326	27326		8.5933	0	1	1381000			53575	13613	38946	39259	52310	52310					0.06491503999768611
TFQGTVPTA	9	Unmodified	_TFQGTVPTA_					0	0	0		QSER1|p.S234F|1|0.24|ENSG00000060749|chr11:32932346-32932346|C/T|missense_variant	QSER1|p.S234F|1|0.24|ENSG00000060749|chr11:32932346-32932346|C/T|missense_variant	QSER1|p.S234F|1|0.24|ENSG00000060749|chr11:32932346-32932346|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	460.63525390625	2	461.23745	920.460347	-0.30032	-0.00013852	-0.19501	-8.9946E-05	-0.49533	-0.00022846	461.23734799445504	40.926	0.40276	40.926	40.66	41.063	0					11	7	2	0	0	0	0.69507	1	14032	14032		2.9952	0	1	1089800			53576	15261	38947	39260	52311	52311					-0.003064943735353154
TFQITKQGD	9	Unmodified	_TFQITKQGD_					0	0	0		ENST00000493829.5_1_2:85843459-85872221:+|nuORF;nc|ENSG00000168883|Q53GS9-3|USP39;ENSG00000168883|ENST00000323701|USP39;ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39	ENST00000493829.5_1_2:85843459-85872221:+|nuORF	ENST00000493829.5_1_2:85843459-85872221:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	518.6953735351562	2	519.266739	1036.51892	-0.41772	-0.00021691	-0.35213	-0.00018285	-0.76985	-0.00039976	519.2664930788152	51.244	0.76113	51.244	50.915	51.676	0					26	14	3	0	0	0	0.60917	1	18128	18128		25.399	9.5521	1	4075400			53577	7352	38948	39261	52312	52312					0.002125622009543804
TFRARVLQKY	10	Unmodified	_TFRARVLQKY_					0	0	0			REV__nc|ENSG00000119682|O15033-2|AREL1	REV__nc|ENSG00000119682|O15033-2|AREL1	MULTI-SECPEP	A375_MHC_IP_R1	1	428.3189697265625	3	427.919056	1280.73534	-0.49166	-0.00021039	-0.77226	-0.00033047	-1.2639	-0.00054086	427.91920403017343	38.17	0.35547	38.17	37.964	38.319	0					11	6	2	0	0	0	0.94163	1	12955	12955		1.7423	0	1	2694800	+		53578	18083	38949	39262	52313	52313					0.10620162825307489
TFRDLLPGEY	10	Unmodified	_TFRDLLPGEY_					0	0	0		ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MULTI-MSMS	A375_MHC_IP_R2	2	604.7533569335938	2	605.808771	1209.60299	-0.40554	-0.00024568	-0.8106	-0.00049107	-1.2161	-0.00073674	605.8081858100209	83.064	0.96039	83.804	83.242	84.203	0.73962					19	11	2	0	0	0	0.70925	1	31581	31581		8.1555	2.4237	1	5020200			53579	9433	38950	39263	52314	52314					0.006570932978547717
TFRPLPPPPP	10	Unmodified	_TFRPLPPPPP_					0	0	0		nc|ENSG00000009694|Q9UKZ4-2|TENM1;ENSG00000009694|ENST00000371130|TENM1	nc|ENSG00000009694|Q9UKZ4-2|TENM1	nc|ENSG00000009694|Q9UKZ4-2|TENM1	MULTI-SECPEP	A375_MHC_IP_R1	1	373.95074462890625	3	373.550082	1117.62842	0.41573	0.0001553	0.079002	2.9511E-05	0.49474	0.00018481	373.5503215416244	81.885	0.50654	81.885	81.607	82.113	0					20	9	3	0	0	0	0.92957	1	29966	29966		1.5923	0.63001	1	1998200			53580	969	38951	39264	52315	52315					0.07430612610937715
TFRQRFRQFRY	11	Unmodified	_TFRQRFRQFRY_					0	0	0		ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	MSMS	A375_MHC_IP_R2	2	535.6989135742188	3	535.623414	1603.84841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.571	1	83.314	82.814	83.814	0.74293								0	0	0	0.16358	1	31367	31367		0.094841	0.011491	1				53581	7585	38952	39265	52316	52316					0.07064231271215249
TFRRTRVR	8	Unmodified	_TFRRTRVR_					0	0	0			REV__ENST00000497413.1_1_9:139744039-139744958:+|nuORF	REV__ENST00000497413.1_1_9:139744039-139744958:+|nuORF	MSMS	A375_MHC_IP_R1	1	546.3946533203125	2	546.330873	1090.64719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.48	1	140.48	139.98	140.98	0								0	0	0	0.16876	1	53954	53954		2.3027	0	1		+		53582	24984	38953	39266	52317	52317					0.10549587025343499
TFRYIRILVA	10	Unmodified	_TFRYIRILVA_					0	0	0			REV__ENST00000574285.2_1_16:9197349-9197592:+|nuORF	REV__ENST00000574285.2_1_16:9197349-9197592:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	626.7833862304688	2	626.38224	1250.74993	-0.92179	-0.00057739	-1.529	-0.00095775	-2.4508	-0.0015351	626.381474408032	142.28	0.80931	142.28	142.08	142.89	0					27	15	3	0	0	0	0.72416	1	54610	54610		1.4819	0	1	5604400	+		53583	26299	38954	39267	52318	52318					0.1345823497345009
TFSAPTMRLS	10	Unmodified	_TFSAPTMRLS_					0	0	0			REV__ENST00000415993.5_1_22:50683938-50688578:-|nuORF	REV__ENST00000415993.5_1_22:50683938-50688578:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	555.7268676757812	2	555.784241	1109.55393	-0.81964	-0.00045555	-3.2664	-0.0018154	-4.0861	-0.002271	555.7831344874475	65.029	0.55722	65.767	65.41	65.968	0.73812					12	10	2	0	0	0	0.74754	1	24718	24718		8.1555	0	1	962960	+		53584	24528	38955	39268	52319	52319					0.0035348173726106324
TFSCISDMIK	10	Unmodified	_TFSCISDMIK_					0	0	0		LYN|p.P202S|3|0.35|ENSG00000254087|chr8:55952082-55952082|C/T|missense_variant	LYN|p.P202S|3|0.35|ENSG00000254087|chr8:55952082-55952082|C/T|missense_variant	LYN|p.P202S|3|0.35|ENSG00000254087|chr8:55952082-55952082|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	381.9476623535156	3	382.184082	1143.53042	-0.53508	-0.0002045	0.3055	0.00011676	-0.22958	-8.7744E-05	382.1842179516645	25.581	0.55832	26.241	25.992	26.551	0.65992					12	10	2	0	0	0	0.92957	1	8524	8524		0.56317	0	1	1884100			53585	14334	38956	39269	52320	52320					-0.035607000916115794
TFSFIIKTW	9	Unmodified	_TFSFIIKTW_					0	0	0		DLL3|p.E125K|1|0.26|ENSG00000090932|chr19:39500636-39500636|G/A|missense_variant	DLL3|p.E125K|1|0.26|ENSG00000090932|chr19:39500636-39500636|G/A|missense_variant	DLL3|p.E125K|1|0.26|ENSG00000090932|chr19:39500636-39500636|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	381.58087158203125	3	381.546337	1141.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.379	1	33.379	32.879	33.879	0								0	0	0	0.15283	1	10890	10890		11.495	1.9507	1				53586	755	38957	39270	52321	52321					0.052037905167935605
TFSKHEIIH	9	Unmodified	_TFSKHEIIH_					0	0	0		ZNF626|p.L272F|1|0.35|ENSG00000188171|chr19:20625063-20625063|G/A|missense_variant	ZNF626|p.L272F|1|0.35|ENSG00000188171|chr19:20625063-20625063|G/A|missense_variant	ZNF626|p.L272F|1|0.35|ENSG00000188171|chr19:20625063-20625063|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	556.69775390625	2	556.298373	1110.58219	-0.90507	-0.00050349	1.0126	0.00056329	0.1075	5.98E-05	556.2988732222422	55.811	0.96736	56.561	56.083	57.051	0.75015					38	18	3	0	0	0	0.67152	1	21095	21095		13.906	1.3745	1	2826700			53587	30236	38958	39271	52322	52322					0.03132547708855782
TFSKHEIIH	9	Unmodified	_TFSKHEIIH_					0	0	0		ZNF626|p.L272F|1|0.35|ENSG00000188171|chr19:20625063-20625063|G/A|missense_variant	ZNF626|p.L272F|1|0.35|ENSG00000188171|chr19:20625063-20625063|G/A|missense_variant	ZNF626|p.L272F|1|0.35|ENSG00000188171|chr19:20625063-20625063|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	556.298373	1110.58219	-0.90507	-0.00050349	1.0126	0.00056329	0.1075	5.98E-05	556.2988732222422	55.811	0.96736	56.561	56.083	57.051	0.75015	-0.18998	-3.3214E-05	NaN	13.906	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2826700			53588	30236	38958	39271							0.03132547708855782
TFSPEVDFY	9	Unmodified	_TFSPEVDFY_					0	0	0			REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	552.6661987304688	2	552.747847	1103.48114	-0.36401	-0.00020121	0.37581	0.00020773	0.011793	6.5183E-06	552.7477354459936	45.702	0.65881	45.702	45.384	46.043	0					27	12	4	0	0	0	0.64808	1	15963	15963		11.64	11.64	1	5377200	+		53589	18436	38959	39272	52323	52323					-0.06645948784534994
TFSSYWMHW	9	Unmodified	_TFSSYWMHW_					0	0	0		nc|ENSG00000224650|A0A0B4J1X5|IGHV3-74	nc|ENSG00000224650|A0A0B4J1X5|IGHV3-74	nc|ENSG00000224650|A0A0B4J1X5|IGHV3-74	MSMS	A375_MHC_IP_R2	2	622.7113647460938	2	622.763309	1243.51206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.745	1	78.488	77.988	78.988	0.74293								0	0	0	0.15486	1	29522	29522		7.9102	0.62092	1				53590	14907	38960	39273	52324	52324					-0.09995073951267841
TFTALEMSSI	10	Unmodified	_TFTALEMSSI_					0	0	0		ENSG00000223601|ENST00000422359|EBLN1	ENSG00000223601|ENST00000422359|EBLN1	ENSG00000223601|ENST00000422359|EBLN1	MULTI-MSMS	A375_MHC_IP_R2	2	550.7308349609375	2	550.270632	1098.52671	-0.92732	-0.00051028	0.10179	5.6013E-05	-0.82553	-0.00045427	550.2707801534642	62.293	0.60929	63.036	62.673	63.282	0.74263					21	11	3	0	0	0	0.36703	1	23664	23664		36.127	0	1	3833000			53591	9687	38961	39274	52325	52325					-0.01861046593762694
TFTGSFLSPW	10	Unmodified	_TFTGSFLSPW_					0	0	0		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;ENST00000461187.5_1_2:130911777-130913705:-|nuORF;ENST00000438378.2_1_2:132275414-132277996:+|nuORF;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;nc|ENSG00000136699|Q9NXE4-5|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	MSMS	A375_MHC_IP_R2	2	381.5809326171875	3	381.52208	1141.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.517	1	33.254	32.754	33.754	0.73692								0	0	0	0.14601	1	11582	11582		21.59	9.4154	1				53592	4806	38962	39275	52326	52326					-0.020699632766081777
TFTSYQLEK	9	Unmodified	_TFTSYQLEK_					0	0	0		ARX|p.E342K|1|0.3|ENSG00000004848|chrX:25012971-25012971|C/T|missense_variant	ARX|p.E342K|1|0.3|ENSG00000004848|chrX:25012971-25012971|C/T|missense_variant	ARX|p.E342K|1|0.3|ENSG00000004848|chrX:25012971-25012971|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	372.2611083984375	3	372.85724	1115.54989	-0.073851	-2.7536E-05	1.1419	0.00042578	1.0681	0.00039824	372.85763170609886	29.44	0.70871	29.44	28.795	29.504	0					24	13	2	0	0	0	0.65527	1	9185	9185		12.175	1.2758	1	5144700			53593	187	38963	39276	52327	52327					-0.0032628448479954386
TFTTFDLG	8	Unmodified	_TFTTFDLG_					0	0	0		nc|ENSG00000079332|Q9NR31-2|SAR1A;ENSG00000079332|ENST00000373241|SAR1A;ENSG00000152700|ENST00000402673|SAR1B	nc|ENSG00000079332|Q9NR31-2|SAR1A	nc|ENSG00000079332|Q9NR31-2|SAR1A	MSMS	A375_MHC_IP_R2	2	450.906982421875	2	451.218726	900.422899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.255	1	75.993	75.493	76.493	0.73752								0	0	0	0.16876	1	28564	28564		8.5933	2.8329	1				53594	1693	38964	39277	52328	52328					-0.03129585639135257
TFTVQFYNSI	10	Unmodified	_TFTVQFYNSI_					0	0	0		nc|ENSG00000143552|Q5VU65-2|NUP210L;ENSG00000143552|ENST00000368559|NUP210L	nc|ENSG00000143552|Q5VU65-2|NUP210L	nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-SECPEP	A375_MHC_IP_R2	2	407.60467529296875	3	407.20464	1218.59209	0.079292	3.2288E-05	-0.095826	-3.9021E-05	-0.016534	-6.7327E-06	407.2045822535003	48.093	0.9087	48.854	48.632	49.54	0.76128					28	17	3	0	0	0	0.93406	1	18079	18079		9.544	0	1	4179400			53595	5407	38965	39278	52329	52329					-0.008463090764280423
TFVAAALAAP	10	Unmodified	_TFVAAALAAP_					0	0	0		ENSG00000204983|ENST00000311737|PRSS1;CON__P07477	ENSG00000204983|ENST00000311737|PRSS1	ENSG00000204983|ENST00000311737|PRSS1	MULTI-SECPEP	A375_MHC_IP_R2	2	465.6923828125	2	466.26601	930.517468	-0.57997	-0.00027042	0.12735	5.9377E-05	-0.45262	-0.00021104	466.26596882660823	63.849	0.50748	64.59	64.292	64.8	0.74023					14	9	2	0	0	0	0.53225	1	24247	24247		26.884	12.978	1	1360400		+	53596	593	38966	39279	52330	52330					0.04942972902836118
TFVINLCKL	9	Unmodified	_TFVINLCKL_					0	0	0			REV__ENSG00000148408|ENST00000371372|CACNA1B	REV__ENSG00000148408|ENST00000371372|CACNA1B	MULTI-MSMS	A375_MHC_IP_R2	2	351.2720947265625	3	350.872056	1049.59434	-0.43979	-0.00015431	0.51174	0.00017955	0.071943	2.5243E-05	350.8722634834387	34.847	0.40304	35.61	35.375	35.778	0.76338					12	7	2	0	0	0	0.63811	1	12657	12657		8.1555	0	1	2331800	+		53597	19630	38967	39280	52331	52331					0.07152448127681055
TFVLMLPGYL	10	Unmodified	_TFVLMLPGYL_					0	0	0			REV__ENST00000488966.1_1_6:43481054-43483343:-|nuORF	REV__ENST00000488966.1_1_6:43481054-43483343:-|nuORF	MSMS	A375_MHC_IP_R1	1	385.2733154296875	3	385.215711	1152.6253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.208	1	22.208	21.708	22.708	0								0	0	0	0.15348	1	5936	5936		9.544	2.9136	1		+		53598	18993	38968	39281	52332	52332					0.055096014419177664
TFVQIKSYY	9	Unmodified	_TFVQIKSYY_					0	0	0		ENST00000232564.7_1_3:179123064-179123154:-|nuORF	ENST00000232564.7_1_3:179123064-179123154:-|nuORF	ENST00000232564.7_1_3:179123064-179123154:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	383.9374694824219	3	383.53773	1147.59136	-0.16588	-6.3622E-05	-0.51416	-0.0001972	-0.68004	-0.00026082	383.53760243180716	40.315	0.35453	41.09	40.879	41.234	0.77451					11	6	2	0	0	0	0.74412	1	14966	14966		6.6304	3.3107	1	2308800			53599	10146	38969	39282	52333	52333					0.02346896274525534
TFVTQVGE	8	Unmodified	_TFVTQVGE_					0	0	0			REV__tr|U7T148|U7T148_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00895PE=3SV=1	REV__tr|U7T148|U7T148_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00895PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	880.84130859375	1	880.441074	879.433798	-0.89762	-0.0007903	-0.32442	-0.00028564	-1.222	-0.0010759	880.440489263415	59.699	0.55592	60.446	60.148	60.704	0.74714					13	10	2	0	0	0	0.68831	1	22642	22642		34.402	6.7729	1	1533900	+		53600	28694	38970	39283	52334	52334					-0.010741832648591298
TFVTQVGE	8	Unmodified	_TFVTQVGE_					0	0	0			REV__tr|U7T148|U7T148_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00895PE=3SV=1	REV__tr|U7T148|U7T148_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00895PE=3SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		1	880.441074	879.433798	-0.27073	-0.00023837	0.31355	0.00027606	0.042815	3.7696E-05	880.4407619336441	60.605	0.3064	60.605	60.464	60.77	0	0.079813	0.00026014	NaN	34.402	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1135300	+		53601	28694	38970	39283							-0.010741832648591298
TFWDSWRW	8	Unmodified	_TFWDSWRW_					0	0	0			REV__nc|ENSG00000048162|Q9Y3C1-3|NOP16	REV__nc|ENSG00000048162|Q9Y3C1-3|NOP16	MULTI-SECPEP	A375_MHC_IP_R1	1	591.6068725585938	2	592.269616	1182.52468	-0.28534	-0.000169	-1.5604	-0.00092421	-1.8458	-0.0010932	592.2689777213184	37.154	0.30596	37.154	37.045	37.351	0					7	5	2	0	0	0	0.91495	1	12487	12487		24.674	2.9272	1	1152200	+		53602	27100	38971	39284	52335	52335					-0.059282944967208095
TFWSYIII	8	Unmodified	_TFWSYIII_					0	0	0		ENST00000558906.5_1_15:50152393-50311102:-|nuORF;ENST00000559726.5_1_15:50152393-50311102:-|nuORF;ENSG00000104043|ENST00000284509|ATP8B4;ENST00000558959.5_1_15:50271812-50273406:-|nuORF	ENST00000558906.5_1_15:50152393-50311102:-|nuORF	ENST00000558906.5_1_15:50152393-50311102:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	521.6607666015625	2	521.784036	1041.55352	-0.52663	-0.00027479	4.452	0.002323	3.9254	0.0020482	521.7867518717943	88.899	0.70411	89.631	89.331	90.035	0.7318					21	13	2	0	0	0	0.86765	1	33898	33898		18.135	0	1	1187000			53603	2479	38972	39285	52336	52336					0.03440430079695034
TFYVTGEADCT	11	Unmodified	_TFYVTGEADCT_					0	0	0			REV__ENSG00000119401|ENST00000450136|TRIM32	REV__ENSG00000119401|ENST00000450136|TRIM32	MULTI-SECPEP	A375_MHC_IP_R1	1	403.3272399902344	3	402.837628	1205.49105	-0.63488	-0.00025575	0.93655	0.00037728	0.30166	0.00012152	402.8381824880289	29.006	0.30425	29.006	28.845	29.149	0					7	5	2	0	0	0	0.99732	1	9055	9055		4.1166	3.1544	1	1248900	+		53604	18070	38973	39286	52337	52337					-0.10347128841453923
TGADSFVM	8	Unmodified	_TGADSFVM_					0	0	0			REV__PKD1|p.P1857S|1|0.44|ENSG00000008710|chr16:2109598-2109598|G/A|missense_variant	REV__PKD1|p.P1857S|1|0.44|ENSG00000008710|chr16:2109598-2109598|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	826.9202270507812	1	827.360381	826.353105	-0.4011	-0.00033185	0.78525	0.00064969	0.38416	0.00031784	827.3609369643386	89.683	0.606	89.683	89.375	89.981	0					21	11	2	0	0	0	0.86765	1	33064	33064		24.674	0	1	4568700	+		53605	27785	38974	39287	52338	52338					-0.06701787579390839
TGAEPLPAPS	10	Unmodified	_TGAEPLPAPS_					0	0	0		CON__Q2KJF1	CON__Q2KJF1	CON__Q2KJF1	MULTI-MSMS	A375_MHC_IP_R1	1	470.6422424316406	2	470.242732	938.470912	-0.75151	-0.00035339	0.4093	0.00019247	-0.34222	-0.00016092	470.24282708424727	29.175	0.3575	29.175	28.945	29.302	0					11	6	2	0	0	0	0.25271	1	9109	9109		43.858	0	1	3830500		+	53606	612	38975	39288	52339	52339					-0.0007851171909578625
TGAEPLPAPS	10	Unmodified	_TGAEPLPAPS_					0	0	0		CON__Q2KJF1	CON__Q2KJF1	CON__Q2KJF1	MULTI-MATCH	A375_MHC_IP_R2	2		2	470.242732	938.470912	-1.0601	-0.00049849	0.41368	0.00019453	-0.64638	-0.00030396	470.2427786282204	28.51	0.25393	29.189	28.96	29.214	0.67857	0.006718	2.9191E-06	NaN	43.858	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2557700		+	53607	612	38975	39288							-0.0007851171909578625
TGAIEDFP	8	Unmodified	_TGAIEDFP_					0	0	0		ENST00000450462.6_1_6:43495291-43496568:-|nuORF	ENST00000450462.6_1_6:43495291-43496568:-|nuORF	ENST00000450462.6_1_6:43495291-43496568:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	849.1549682617188	1	849.398875	848.391599	0.083391	7.0832E-05	0.14646	0.00012441	0.22985	0.00019524	849.3989040676986	115.33	0.66084	115.33	114.97	115.63	0					19	12	2	0	0	0	0.75805	1	42332	42332		18.135	4.6271	1	6027700			53608	12066	38976	39289	52340	52340					-0.038661586732359865
TGAIEDFP	8	Unmodified	_TGAIEDFP_					0	0	0		ENST00000450462.6_1_6:43495291-43496568:-|nuORF	ENST00000450462.6_1_6:43495291-43496568:-|nuORF	ENST00000450462.6_1_6:43495291-43496568:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	849.398875	848.391599	-0.48222	-0.0004096	-0.032641	-2.7725E-05	-0.51486	-0.00043732	849.3987911555539	114.7	0.6133	115.39	115.06	115.68	0.68999	0.030894	-8.3742E-05	NaN	18.135	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4477600			53609	12066	38976	39289							-0.038661586732359865
TGAIKRGVP	9	Unmodified	_TGAIKRGVP_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	A375_MHC_IP_R2	2	450.1768798828125	2	449.777077	897.5396	-0.24534	-0.00011035	-0.38228	-0.00017194	-0.62762	-0.00028229	449.77682026700114	70.227	0.70914	70.962	70.693	71.402	0.73421					33	13	3	0	0	0	0.1277	1	26600	26600		37.974	0	1	5793800			53610	7983	38977	39290	52341	52341					0.08673197371285823
TGALLGVV	8	Unmodified	_TGALLGVV_					0	0	0			REV__nc|ENSG00000132768|Q9BQC3-3|DPH2	REV__nc|ENSG00000132768|Q9BQC3-3|DPH2	MULTI-SECPEP	A375_MHC_IP_R2	2	365.61309814453125	2	365.228897	728.44324	-0.15293	-5.5853E-05	0.14887	5.4373E-05	-0.0040521	-1.48E-06	365.2288923545537	39.114	0.3585	39.888	39.658	40.016	0.77451					11	6	2	0	0	0	0.972	1	14348	14348		2.3027	0	1	2648400	+		53611	18677	38978	39291	52342	52342					0.06815629811330837
TGAPVIESPY	10	Unmodified	_TGAPVIESPY_					0	0	0		ENSG00000101811|ENST00000372972|CSTF2;nc|ENSG00000101811|P33240-2|CSTF2;CSTF2|p.G116R|1|0.41|ENSG00000101811|chrX:100823330-100823330|G/A|missense_variant	ENSG00000101811|ENST00000372972|CSTF2	ENSG00000101811|ENST00000372972|CSTF2	MULTI-MSMS	A375_MHC_IP_R1	1	517.6632080078125	2	517.263665	1032.51278	-0.4084	-0.00021125	0.0545	2.8191E-05	-0.3539	-0.00018306	517.2636114789412	105.57	1.5287	105.57	105.2	106.73	0					61	29	3	0	0	0	0.63639	1	38706	38706		18.146	2.2992	1	14387000			53612	2324	38979	39292	52343	52343					-0.00217956030564892
TGARPETFW	9	Unmodified	_TGARPETFW_					0	0	0		PHIP|p.D644Gfs*18|1|0.37|ENSG00000146247|chr6:78998342-78998343|-/A|frameshift_variant	PHIP|p.D644Gfs*18|1|0.37|ENSG00000146247|chr6:78998342-78998343|-/A|frameshift_variant	PHIP|p.D644Gfs*18|1|0.37|ENSG00000146247|chr6:78998342-78998343|-/A|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	532.2186279296875	2	532.761623	1063.50869	-0.71329	-0.00038002	-0.093557	-4.9844E-05	-0.80685	-0.00042986	532.7615143359559	77.047	0.45428	77.79	77.453	77.908	0.74293					12	8	2	0	0	0	0.55359	1	29178	29178		15.847	5.6638	1	1059500			53613	15168	38980	39293	52344	52344					-0.020520007336017443
TGAVEALLMV	10	Oxidation (M)	_TGAVEALLM(Oxidation (M))V_		TGAVEALLM(1)V		TGAVEALLM(46)V	0	0	1			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R1	1	510.6758728027344	2	510.275718	1018.53688	-0.40646	-0.0002074	-0.10965	-5.5953E-05	-0.51611	-0.00026336	510.2757020646893	98.381	0.86409	98.381	98.05	98.914	0					46	16	4	0	0	0	0.23156	1	36091	36091		46.021	6.0636	1	18703000	+		53614	19932	38981	39294	52345	52345		481			0.028355611314623275
TGCAAKIQ	8	Unmodified	_TGCAAKIQ_					0	0	0			REV__ENST00000502766.2_1_8:80683132-80683852:-|nuORF	REV__ENST00000502766.2_1_8:80683132-80683852:-|nuORF	MSMS	A375_MHC_IP_R2	2	396.1139831542969	2	396.207638	790.400723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.867	1	60.614	60.114	61.114	0.74714								0	0	0	0.16876	1	22656	22656		7.9102	0.62092	1		+		53615	25505	38982	39295	52346	52346					-0.002860885885525022
TGCCCCCCGR	10	Unmodified	_TGCCCCCCGR_					0	0	0		ENST00000566726.5_1_16:57770947-57775680:+|nuORF	ENST00000566726.5_1_16:57770947-57775680:+|nuORF	ENST00000566726.5_1_16:57770947-57775680:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1008.07177734375	1	1008.26466	1007.25739	0.62005	0.00062518	0.42221	0.0004257	1.0423	0.0010509	1009.2675966920885	115.16	0.30214	115.16	114.97	115.27	0					8	5	3	0	0	0	0.95069	1	42252	42252		0	0	1	1854200			53616	13562	38983	39296	52347	52347					-0.24594989621107288
TGCPGGPG	8	Unmodified	_TGCPGGPG_					0	0	0			REV__ENSG00000110237|ENST00000263674|ARHGEF17	REV__ENSG00000110237|ENST00000263674|ARHGEF17	MULTI-MSMS	A375_MHC_IP_R1	1	645.2425537109375	1	645.266087	644.25881	-0.74655	-0.00048172	-0.74771	-0.00048247	-1.4943	-0.0009642	645.2631953270029	138.38	2.1953	138.38	136.87	139.06	0					74	42	2	0	0	0	0.77839	1	53407	53407		0.79363	0	1	1666600	+		53617	17621	38984	39297	52348	52348					-0.07754881610878783
TGDDSEDGSSD	11	Unmodified	_TGDDSEDGSSD_					0	0	0			REV__ENST00000464624.6_1_20:57428320-57466719:+|nuORF	REV__ENST00000464624.6_1_20:57428320-57466719:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	542.5197143554688	2	542.681087	1083.34762	-0.73095	-0.00039667	3.6341	0.0019721	2.9031	0.0015755	543.1862812737897	84.358	0.25398	85.094	84.968	85.222	0.73607					5	4	2	0	0	0	0.99227	1	32061	32061		5.7319	0	1	3257500	+		53618	25016	38985	39298	52349	52349					-0.19071884418804075
TGDEAIVEW	9	Unmodified	_TGDEAIVEW_					0	0	0			REV__nc|ENSG00000102387|Q5H9L4-3|TAF7L	REV__nc|ENSG00000102387|Q5H9L4-3|TAF7L	MULTI-SECPEP	A375_MHC_IP_R1	1	510.9739074707031	2	510.237647	1018.46074	-0.6407	-0.00032691	-0.40066	-0.00020443	-1.0414	-0.00053134	510.2375733756679	32.458	0.35269	32.458	32.282	32.634	0					14	6	3	0	0	0	0.76187	1	10436	10436		11.64	2.2929	1	1566000	+		53619	17220	38986	39299	52350	52350					-0.047751194443321765
TGDEAIVEW	9	Unmodified	_TGDEAIVEW_					0	0	0			REV__nc|ENSG00000102387|Q5H9L4-3|TAF7L	REV__nc|ENSG00000102387|Q5H9L4-3|TAF7L	MULTI-MATCH	A375_MHC_IP_R2	2		2	510.237647	1018.46074	-0.7617	-0.00038865	-0.24149	-0.00012322	-1.0032	-0.00051186	510.2375725184361	31.868	0.40417	32.605	32.3	32.704	0.73691	0.073383	4.3475E-05	NaN	11.64	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1438300	+		53620	17220	38986	39299							-0.047751194443321765
TGDEKVLEVF	10	Unmodified	_TGDEKVLEVF_					0	0	0			REV__ENST00000486151.5_1_10:49386068-49414901:-|nuORF	REV__ENST00000486151.5_1_10:49386068-49414901:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	569.1953735351562	2	568.795329	1135.5761	-0.21053	-0.00011975	0.34168	0.00019435	0.13115	7.4596E-05	568.7952128148887	68.895	0.6082	68.895	68.616	69.224	0					19	11	2	0	0	0	0.47386	1	24961	24961		47.749	5.9091	1	4104000	+		53621	20985	38987	39300	52351	52351					0.013739846866428707
TGDEKVLEVF	10	Unmodified	_TGDEKVLEVF_					0	0	0			REV__ENST00000486151.5_1_10:49386068-49414901:-|nuORF	REV__ENST00000486151.5_1_10:49386068-49414901:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	569.23681640625	2	568.795329	1135.5761	-0.24043	-0.00013676	2.0193	0.0011486	1.7788	0.0010118	568.7948186218061	68.081	0.66115	68.817	68.51	69.171	0.73512					36	12	4	0	0	0	0.21466	1	25800	25800		47.749	5.9091	1	3842900	+		53622	20985	38987	39300	52352	52352					0.013739846866428707
TGDEKVLEVF	10	Unmodified	_TGDEKVLEVF_					0	0	0			REV__ENST00000486151.5_1_10:49386068-49414901:-|nuORF	REV__ENST00000486151.5_1_10:49386068-49414901:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	569.19482421875	2	568.795329	1135.5761	-0.24043	-0.00013676	2.0193	0.0011486	1.7788	0.0010118	568.7948186218061	68.081	0.66115	68.817	68.51	69.171	0.73512					36	12	4	0	0	0	0.47386	1	25815	25815		47.749	14.963	1	3842900	+		53623	20985	38987	39300	52353	52353					0.013739846866428707
TGDFNGWNPF	10	Unmodified	_TGDFNGWNPF_					0	0	0		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-SECPEP	A375_MHC_IP_R2	2	577.1904296875	2	577.748713	1153.48287	-0.074731	-4.3176E-05	2.5682	0.0014838	2.4935	0.0014406	577.750994760072	68.39	0.405	69.125	68.918	69.323	0.73511					12	7	2	0	0	0	0.90853	1	25848	25848		10.824	4.1008	1	985210			53624	3223	38988	39301	52354	52354					-0.08772894975913914
TGDLSDAHLD	10	Unmodified	_TGDLSDAHLD_					0	0	0			REV__ZNF365|p.M132I|1|0.2|ENSG00000138311|chr10:62376589-62376589|G/T|missense_variant	REV__ZNF365|p.M132I|1|0.2|ENSG00000138311|chr10:62376589-62376589|G/T|missense_variant	MSMS	A375_MHC_IP_R2	2	522.1910400390625	2	522.235635	1042.45672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.214	1	85.95	85.45	86.45	0.73601								0	0	0	0.14601	1	32395	32395		25.399	7.2643	1		+		53625	19083	38989	39302	52355	52355					-0.06281208938048621
TGDNIREFL	9	Unmodified	_TGDNIREFL_					0	0	0		ENSG00000214046|ENST00000487416|SMIM7;ENST00000461364.1_1_19:16764844-16770945:-|nuORF	ENSG00000214046|ENST00000487416|SMIM7	ENSG00000214046|ENST00000487416|SMIM7	MULTI-SECPEP	A375_MHC_IP_R1	1	532.2186889648438	2	532.772188	1063.52982	-0.52436	-0.00027937	0.42234	0.00022501	-0.10202	-5.4354E-05	532.7723407771842	51.924	1.2692	51.924	51.475	52.744	0					71	23	6	0	0	0	0.54812	1	18463	18463		24.991	15.608	1	30766000			53626	9601	38990	39303	52356	52356					0.0005996457523451681
TGDPEEETMD	10	Unmodified	_TGDPEEETMD_					0	0	0			REV__nc|ENSG00000106948|Q7Z591-2|AKNA	REV__nc|ENSG00000106948|Q7Z591-2|AKNA	MSMS	A375_MHC_IP_R2	2	562.2054443359375	2	562.208426	1122.4023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.416	1	69.151	68.651	69.651	0.73511								0	0	0	0.15158	1	25926	25926		14.838	4.0143	1		+		53627	17471	38991	39304	52357	52357					-0.1540058887176201
TGDPKQDLAY	10	Unmodified	_TGDPKQDLAY_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000406934.5_1_22:38246060-38259001:+|nuORF;ENST00000476955.5_1_22:38245435-38266306:+|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-MSMS	A375_MHC_IP_R1	1	554.669189453125	2	554.269478	1106.5244	-0.71009	-0.00039358	-0.10918	-6.0518E-05	-0.81927	-0.0004541	554.2694453619451	32.912	0.55673	32.912	32.785	33.342	0					13	10	2	0	0	0	0.43567	2	10694	10650;10694		32.037	10.291	1	2137900			53628	2123	38992	39305	52358;52359	52359					-0.02459759007251705
TGDPKQDLAY	10	Unmodified	_TGDPKQDLAY_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000406934.5_1_22:38246060-38259001:+|nuORF;ENST00000476955.5_1_22:38245435-38266306:+|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-MSMS	A375_MHC_IP_R2	2	554.2191772460938	2	554.269478	1106.5244	-0.80073	-0.00044382	-0.027791	-1.5404E-05	-0.82852	-0.00045922	554.2697147156775	32.248	0.35609	32.985	32.857	33.213	0.73692					10	6	2	0	0	0	0.49514	1	11415	11415		28.495	6.7479	1	2850600			53629	2123	38992	39305	52360	52360					-0.02459759007251705
TGDPLIRLF	9	Unmodified	_TGDPLIRLF_					0	0	0			REV__nc|ENSG00000113578|P05230-2|FGF1	REV__nc|ENSG00000113578|P05230-2|FGF1	MULTI-SECPEP	A375_MHC_IP_R1	1	515.6348876953125	2	516.297842	1030.58113	-0.3689	-0.00019046	0.0040198	2.0754E-06	-0.36488	-0.00018839	516.2978584165058	42.664	0.55565	42.664	42.336	42.891	0					12	10	2	0	0	0	0.65246	1	14735	14735		10.824	0	1	4029700	+		53630	17788	38993	39306	52361	52361					0.06706333339934645
TGDPTMSGQVM	11	Unmodified	_TGDPTMSGQVM_					0	0	0		ENST00000488550.5_1_2:66798235-66798658:+|nuORF;nc|ENSG00000143995|O00470-2|MEIS1	ENST00000488550.5_1_2:66798235-66798658:+|nuORF	ENST00000488550.5_1_2:66798235-66798658:+|nuORF	MSMS	A375_MHC_IP_R2	2	562.2054443359375	2	562.241549	1122.46855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.855	1	68.59	68.09	69.09	0.73511								0	0	0	0.15377	1	25714	25714		18.146	0	1				53631	12616	38994	39307	52362	52362					-0.08779051510714453
TGDSHLRIM	9	Unmodified	_TGDSHLRIM_					0	0	0			REV__GABRB3|p.P145S|1|0.34|ENSG00000166206|chr15:26621342-26621342|G/A|missense_variant	REV__GABRB3|p.P145S|1|0.34|ENSG00000166206|chr15:26621342-26621342|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	515.403564453125	2	515.260933	1028.50731	-0.35334	-0.00018206	0.43534	0.00022431	0.081998	4.225E-05	515.2613452134814	20.818	0.35778	20.818	20.69	21.048	0					11	6	2	0	0	0	0.75466	1	5354	5354		7.9102	1.187	1	1467200	+		53632	26660	38995	39308	52363	52363					-0.005799580940447413
TGDSHSLYV	9	Unmodified	_TGDSHSLYV_					0	0	0		nc|ENSG00000143952|Q9P1Q0-2|VPS54;ENSG00000143952|ENST00000272322|VPS54	nc|ENSG00000143952|Q9P1Q0-2|VPS54	nc|ENSG00000143952|Q9P1Q0-2|VPS54	MULTI-SECPEP	A375_MHC_IP_R2	2	489.996826171875	2	489.729989	977.445425	-0.58007	-0.00028408	-1.6068	-0.00078692	-2.1869	-0.001071	489.729930012571	30.824	0.55494	31.542	31.317	31.872	0.71857					16	10	2	0	0	0	0.65246	1	10801	10801		10.824	0	1	2141200			53633	5450	38996	39309	52364	52364					-0.04419986241521201
TGDSNAATCSF	11	Unmodified	_TGDSNAATCSF_					0	0	0			REV__SSTR1|p.R197C|1|0.16|ENSG00000139874|chr14:38209978-38209978|C/T|missense_variant	REV__SSTR1|p.R197C|1|0.16|ENSG00000139874|chr14:38209978-38209978|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	537.2157592773438	2	537.213846	1072.41314	-0.88709	-0.00047656	-1.2171	-0.00065385	-2.1042	-0.0011304	537.2131518937126	86.463	0.35455	86.463	86.274	86.629	0					10	6	2	0	0	0	0.72494	2	31735	31735;31750		13.615	0.5724	1	1439600	+		53634	28049	38997	39310	52365;52366	52365					-0.1201714170683772
TGDSNWDLS	9	Unmodified	_TGDSNWDLS_					0	0	0			REV__ENSG00000092377|ENST00000383032|TBL1Y	REV__ENSG00000092377|ENST00000383032|TBL1Y	MSMS	A375_MHC_IP_R2	2	497.67169189453125	2	497.709254	993.403954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.798	1	67.534	67.034	68.034	0.73631								0	0	0	0.15069	1	25306	25306		20.454	2.3073	1		+		53635	16969	38998	39311	52367	52367					-0.09301167000865007
TGDWSGSLA	9	Unmodified	_TGDWSGSLA_					0	0	0			REV__ENST00000513060.5_1_5:180669121-180670896:-|nuORF	REV__ENST00000513060.5_1_5:180669121-180670896:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	447.6036682128906	2	447.203607	892.392661	0.020922	9.3562E-06	-0.093975	-4.2026E-05	-0.073053	-3.267E-05	447.2034222974997	28.617	0.40556	28.617	28.39	28.795	0					9	7	2	0	0	0	0.77396	1	8898	8898		6.2058	1.8765	1	2361800	+		53636	22533	38999	39312	52368	52368					-0.05783944304334909
TGDWVKVTT	9	Unmodified	_TGDWVKVTT_					0	0	0		ENST00000549143.5_1_12:56666833-56666890:-|nuORF	ENST00000549143.5_1_12:56666833-56666890:-|nuORF	ENST00000549143.5_1_12:56666833-56666890:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	503.6898193359375	2	503.763832	1005.51311	-0.29595	-0.00014909	-0.049933	-2.5154E-05	-0.34588	-0.00017424	503.7637529529997	63.093	1.23	63.093	62.454	63.684	0					50	23	3	0	0	0	0.44024	1	22724	22724		22.736	2.2827	1	2475600			53637	13356	39000	39313	52369	52369					0.010574636892783928
TGDWVKVTT	9	Unmodified	_TGDWVKVTT_					0	0	0		ENST00000549143.5_1_12:56666833-56666890:-|nuORF	ENST00000549143.5_1_12:56666833-56666890:-|nuORF	ENST00000549143.5_1_12:56666833-56666890:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	503.6891174316406	2	503.763832	1005.51311	-0.80647	-0.00040627	-0.50108	-0.00025243	-1.3075	-0.0006587	503.76388548992355	62.371	1.3149	63.113	62.319	63.634	0.74263					44	25	2	0	0	0	0.44024	1	23482	23482		22.736	3.4793	1	1737800			53638	13356	39000	39313	52370	52370					0.010574636892783928
TGEAWHKI	8	Unmodified	_TGEAWHKI_					0	0	0		CACNA1B|p.E1659K|2|0.61|ENSG00000148408|chr9:138078139-138078139|G/A|missense_variant	CACNA1B|p.E1659K|2|0.61|ENSG00000148408|chr9:138078139-138078139|G/A|missense_variant	CACNA1B|p.E1659K|2|0.61|ENSG00000148408|chr9:138078139-138078139|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	471.14453125	2	471.245609	940.476666	-0.39245	-0.00018494	-0.76366	-0.00035987	-1.1561	-0.00054481	471.2451751970856	36.109	0.45726	36.109	35.881	36.339	0					13	8	2	0	0	0	0.93416	1	12076	12076		14.582	14.582	1	2655500			53639	274	39001	39314	52371	52371					0.004046315832169967
TGEDDFCLLKG	11	Unmodified	_TGEDDFCLLKG_					0	0	0			REV__ENSG00000204947|ENST00000378061|ZNF425	REV__ENSG00000204947|ENST00000378061|ZNF425	MSMS	A375_MHC_IP_R2	2	399.7467041015625	3	399.85339	1196.53834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.833	1	21.443	20.943	21.943	0.61029								0	0	0	0.16258	1	6516	6516		2.4348	0.18206	1		+		53640	22550	39002	39315	52372	52372					-0.05206849570481609
TGEELRRAGR	10	Unmodified	_TGEELRRAGR_					0	0	0			REV__nc|ENSG00000090615|Q08378-4|GOLGA3	REV__nc|ENSG00000090615|Q08378-4|GOLGA3	MULTI-SECPEP	A375_MHC_IP_R2	2	572.6690673828125	2	572.81271	1143.61087	-0.30556	-0.00017503	-0.36995	-0.00021191	-0.6755	-0.00038694	573.3138116651576	65.053	0.20234	65.791	65.715	65.917	0.73811					5	3	2	0	0	0	0.8125	1	24667	24667		24.021	0	1	1154400	+		53641	16929	39003	39316	52373	52373					0.0448066533799647
TGEEWGGWAQ	10	Unmodified	_TGEEWGGWAQ_					0	0	0		ENST00000568223.6_1_16:769319-769580:+|nuORF	ENST00000568223.6_1_16:769319-769580:+|nuORF	ENST00000568223.6_1_16:769319-769580:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	561.1380004882812	2	560.738345	1119.46214	-1.2701	-0.00071217	1.1668	0.00065429	-0.10323	-5.7883E-05	560.7386165937223	37.021	0.86282	37.792	37.207	38.07	0.7709					23	16	3	0	0	0	0.39599	2	13517	13517;13564		34.402	34.402	1	4683700			53642	13577	39004	39317	52374;52375	52374					-0.09281485355586483
TGEGPDVLVY	10	Unmodified	_TGEGPDVLVY_					0	0	0		ENST00000420783.7_1_3:49044839-49051550:+|nuORF	ENST00000420783.7_1_3:49044839-49051550:+|nuORF	ENST00000420783.7_1_3:49044839-49051550:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	525.1922607421875	2	525.261122	1048.50769	-0.53131	-0.00027908	-1.5172	-0.00079692	-2.0485	-0.001076	525.2603514359297	76.042	1.4197	76.042	75.714	77.133	0					47	27	2	0	0	0	0.51963	1	27624	27624		26.884	4.1474	1	9537700			53643	11731	39005	39318	52376	52376					-0.014622598931964603
TGEKIPIRW	9	Unmodified	_TGEKIPIRW_					0	0	0		EPHA6|p.G930E|1|0.16|ENSG00000080224|chr3:97720265-97720265|G/A|missense_variant	EPHA6|p.G930E|1|0.16|ENSG00000080224|chr3:97720265-97720265|G/A|missense_variant	EPHA6|p.G930E|1|0.16|ENSG00000080224|chr3:97720265-97720265|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	549.5897827148438	2	550.316566	1098.61858	-0.69529	-0.00038263	-0.43643	-0.00024017	-1.1317	-0.0006228	550.3162303966002	87.661	0.45481	88.392	88.166	88.621	0.7318					14	8	2	0	0	0	0.8028	1	33286	33286		0.45834	0	1	1556300			53644	13944	39006	39319	52377	52377					0.07321424605561333
TGEKIPIRW	9	Unmodified	_TGEKIPIRW_					0	0	0		EPHA6|p.G930E|1|0.16|ENSG00000080224|chr3:97720265-97720265|G/A|missense_variant	EPHA6|p.G930E|1|0.16|ENSG00000080224|chr3:97720265-97720265|G/A|missense_variant	EPHA6|p.G930E|1|0.16|ENSG00000080224|chr3:97720265-97720265|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	550.316566	1098.61858	-0.43394	-0.0002388	-0.58764	-0.00032339	-1.0216	-0.0005622	550.3158372282028	88.536	0.35497	88.536	88.409	88.764	0	0.071638	-0.00010248	NaN	0.45834	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1258100			53645	13944	39006	39319							0.07321424605561333
TGESHLNQPF	10	Unmodified	_TGESHLNQPF_					0	0	0			REV__nc|ENSG00000153707|P23468-2|PTPRD	REV__nc|ENSG00000153707|P23468-2|PTPRD	MULTI-SECPEP	A375_MHC_IP_R1	1	376.57427978515625	3	377.180605	1128.51999	0.29827	0.0001125	0.74723	0.00028184	1.0455	0.00039434	377.1808997297208	19.87	0.25469	19.87	19.725	19.98	0					6	4	2	0	0	0	0.9269	1	5007	5007		1.7423	1.1154	1	749180	+		53646	19845	39007	39320	52378	52378					-0.03913223430140533
TGFAERSPRLC	11	Unmodified	_TGFAERSPRLC_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16;nc|ENSG00000221843|Q68DN1|SPATA31H1	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-MSMS	A375_MHC_IP_R2	2	413.27630615234375	3	412.87664	1235.60809	-0.28138	-0.00011618	-0.54346	-0.00022438	-0.82484	-0.00034056	412.8763503148069	49.515	0.50539	50.272	49.995	50.5	0.75737					13	9	2	0	0	0	0.56199	1	18602	18602		16.275	0.7361	1	6989800			53647	9666	39008	39321	52379	52379					-0.0002892611116749322
TGFAERSPRLC	11	Unmodified	_TGFAERSPRLC_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16;nc|ENSG00000221843|Q68DN1|SPATA31H1	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	412.87664	1235.60809	0.20151	8.3199E-05	-0.27373	-0.00011302	-0.072222	-2.9819E-05	412.87649185571024	50.382	0.51128	50.382	50.101	50.613	0	0.054993	0.00012952	NaN	16.275	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3757400			53648	9666	39008	39321							-0.0002892611116749322
TGFAERSPRLC	11	Unmodified	_TGFAERSPRLC_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16;nc|ENSG00000221843|Q68DN1|SPATA31H1	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	412.87664	1235.60809	-0.28138	-0.00011618	-0.54346	-0.00022438	-0.82484	-0.00034056	412.8763503148069	49.515	0.50539	50.272	49.995	50.5	0.75737	-0.054993	-0.00020457	NaN	16.275	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6989800			53649	9666	39008	39321							-0.0002892611116749322
TGFININSL	9	Unmodified	_TGFININSL_					0	0	0		ENST00000513426.1_1_5:53156036-53156228:+|nuORF;ENST00000372386.6_1_9:133355254-133376405:+|nuORF;ENSG00000130707|ENST00000352480|ASS1	ENST00000513426.1_1_5:53156036-53156228:+|nuORF	ENST00000513426.1_1_5:53156036-53156228:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	489.6518249511719	2	489.766374	977.518196	0.034235	1.6767E-05	-0.66936	-0.00032783	-0.63513	-0.00031106	489.76632903096925	45.396	0.85937	45.396	44.98	45.839	0					35	16	3	0	0	0	0.38603	1	15764	15764		25.399	4.9457	1	7412300			53650	4267	39009	39322	52380	52380					0.028537675519032746
TGFRVIKKK	9	Unmodified	_TGFRVIKKK_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	MSMS	A375_MHC_IP_R2	2	359.5973815917969	3	359.569476	1075.6866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.613	1	28.292	27.792	28.792	0.67857								0	0	0	0.15486	1	9458	9458		10.151	2.5416	1				53651	7273	39010	39323	52381	52381					0.15178294256202207
TGFSFHCLY	9	Unmodified	_TGFSFHCLY_					0	0	0		nc|ENSG00000221883|Q8N7S6|ARIH2OS	nc|ENSG00000221883|Q8N7S6|ARIH2OS	nc|ENSG00000221883|Q8N7S6|ARIH2OS	MULTI-SECPEP	A375_MHC_IP_R1	1	538.1388549804688	2	537.739302	1073.46405	-0.67439	-0.00036264	1.1599	0.0006237	0.48548	0.00026106	537.7398460605992	50.697	1.0148	50.697	50.204	51.219	0					31	19	2	0	0	0	0.55359	1	17933	17933		15.847	1.9411	1	2621500			53652	14906	39011	39324	52382	52382					-0.06974147871301284
TGFSFHCLY	9	Unmodified	_TGFSFHCLY_					0	0	0		nc|ENSG00000221883|Q8N7S6|ARIH2OS	nc|ENSG00000221883|Q8N7S6|ARIH2OS	nc|ENSG00000221883|Q8N7S6|ARIH2OS	MULTI-MATCH	A375_MHC_IP_R2	2		2	537.739302	1073.46405	-1.0778	-0.00057956	1.406	0.00075604	0.3282	0.00017649	537.7400094948638	50.17	0.916	50.924	50.445	51.361	0.75406	0.11351	8.4871E-05	NaN	15.847	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3185700			53653	14906	39011	39324							-0.06974147871301284
TGFSIRINRY	10	Unmodified	_TGFSIRINRY_					0	0	0			REV__ENST00000509980.5_1_4:122722579-122736524:+|nuORF	REV__ENST00000509980.5_1_4:122722579-122736524:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	409.29095458984375	3	409.559528	1225.65676	-0.35428	-0.0001451	1.8498	0.0007576	1.4955	0.00061251	409.55995826161524	26.093	0.35487	26.093	25.917	26.271	0					9	6	2	0	0	0	0.92199	1	7792	7792		10.899	0	1	1512200	+		53654	18259	39012	39325	52383	52383					0.052953105202277584
TGGFVLLY	8	Unmodified	_TGGFVLLY_					0	0	0		ENSG00000128829|ENST00000263791|EIF2AK4;nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;nc|ENSG00000128829|Q9P2K8-3|EIF2AK4	ENSG00000128829|ENST00000263791|EIF2AK4	ENSG00000128829|ENST00000263791|EIF2AK4	MULTI-MSMS	A375_MHC_IP_R2	2	435.6421813964844	2	435.242004	868.469455	-0.17102	-7.4435E-05	0.7978	0.00034724	0.62678	0.0002728	435.24219697406386	118.26	0.35603	118.87	118.69	119.05	0.60909					8	6	2	0	0	0	0.7338	1	44915	44915		24.674	1.5255	1	3976500			53655	4165	39013	39326	52384	52384					0.029958989828060112
TGGGNTYLAY	10	Unmodified	_TGGGNTYLAY_					0	0	0			REV__tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	REV__tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	508.66387939453125	2	508.737814	1015.46108	-0.093136	-4.7382E-05	-0.2539	-0.00012917	-0.34704	-0.00017655	508.7377309871868	45.436	0.45332	45.436	45.132	45.585	0					15	8	2	0	0	0	0.71245	1	15780	15780		6.7232	0.96273	1	2022100	+		53656	28869	39014	39327	52385	52385					-0.046036997244755185
TGGIALDNPY	10	Unmodified	_TGGIALDNPY_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	A375_MHC_IP_R2	2	511.21337890625	2	510.753464	1019.49238	-0.67738	-0.00034598	-2.4742	-0.0012637	-3.1515	-0.0016097	510.7533646746549	42.708	1.2168	43.481	43.065	44.282	0.7724					75	23	5	0	0	0	0.49514	1	16017	16017		28.495	3.8206	1	77292000			53657	6309	39015	39328	52386	52386					-0.016591266904015356
TGGISSGAFG	10	Unmodified	_TGGISSGAFG_					0	0	0			REV__ENSG00000166035|ENST00000299022|LIPC	REV__ENSG00000166035|ENST00000299022|LIPC	MSMS	A375_MHC_IP_R1	1	427.1561279296875	2	427.20615	852.397747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.139	1	42.139	41.639	42.639	0								0	0	0	0.14862	1	14587	14587		20.454	0	1		+		53658	20648	39016	39329	52387	52387					-0.034356404417053454
TGGKPGFGSWP	11	Unmodified	_TGGKPGFGSWP_					0	0	0		ENST00000469548.5_1_1:45478364-45478481:+|nuORF	ENST00000469548.5_1_1:45478364-45478481:+|nuORF	ENST00000469548.5_1_1:45478364-45478481:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	546.6659545898438	2	545.769448	1089.52434	-0.41907	-0.00022872	-1.7554	-0.00095804	-2.1745	-0.0011868	545.7696098725927	51.937	1.1178	51.937	51.525	52.643	0					49	21	3	0	0	0	0.62292	1	18410	18410		21.537	2.175	1	12490000			53659	12321	39017	39330	52388	52388					-0.01683714216574117
TGGLFACPLS	10	Unmodified	_TGGLFACPLS_					0	0	0		nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;ENST00000554359.1_1_12:56096799-56101466:-|nuORF;ENST00000554724.5_1_12:56094596-56105857:-|nuORF	nc|ENSG00000135424|Q13683-9|ITGA7	nc|ENSG00000135424|Q13683-9|ITGA7	MULTI-MSMS	A375_MHC_IP_R2	2	483.6737976074219	2	483.241678	964.468803	-0.9091	-0.00043932	2.1112	0.0010202	1.2021	0.00058089	483.2416701802443	61.635	0.40316	62.38	62.07	62.473	0.74504					9	7	2	0	0	0	0.48529	1	23348	23348		29.082	0.59474	1	955910			53660	4680	39018	39331	52389	52389					-0.014852637285684978
TGGLKPSPP	9	Unmodified	_TGGLKPSPP_					0	0	0		ENST00000478808.2_1_12:109490357-109491595:-|nuORF	ENST00000478808.2_1_12:109490357-109491595:-|nuORF	ENST00000478808.2_1_12:109490357-109491595:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	427.1561279296875	2	427.242535	852.470518	-0.050905	-2.1749E-05	0.54795	0.00023411	0.49704	0.00021236	427.2425128433097	42.259	0.20342	42.259	42.132	42.336	0					5	3	2	0	0	0	0.52144	1	14587	14587		16.942	0	1	577380			53661	12468	39019	39332	52390	52390					0.038381133517077615
TGGPARYI	8	Unmodified	_TGGPARYI_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.S4850L|1|0.22|ENSG00000055609|chr7:152138890-152138890|G/A|missense_variant;KMT2C|p.H4849Y|1|0.25|ENSG00000055609|chr7:152138894-152138894|G/A|missense_variant;ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D	ENSG00000055609|ENST00000262189|KMT2C;ENSG00000167548|ENST00000301067|KMT2D	ENSG00000055609|ENST00000262189|KMT2C	MULTI-SECPEP	A375_MHC_IP_R2	2	418.1269226074219	2	417.727052	833.439552	-0.33912	-0.00014166	0.19749	8.2499E-05	-0.14163	-5.9161E-05	417.72703203599696	33.317	0.66167	34.069	33.686	34.348	0.75225					26	12	3	0	0	0	0.46048	1	11886	11886		46.021	11.919	1	7077300			53662	1271;7193	39020	39333	52391	52391					0.016169600374723814
TGGPGCGP	8	Unmodified	_TGGPGCGP_					0	0	0		nc|ENSG00000186891|Q9Y5U5-3|TNFRSF18;ENSG00000186891|ENST00000379268|TNFRSF18;nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	nc|ENSG00000186891|Q9Y5U5-3|TNFRSF18	nc|ENSG00000186891|Q9Y5U5-3|TNFRSF18	MULTI-SECPEP	A375_MHC_IP_R1	1	645.6629028320312	1	645.266087	644.25881	-0.74655	-0.00048172	-0.74771	-0.00048247	-1.4943	-0.0009642	645.2631953270029	138.38	2.1953	138.38	136.87	139.06	0					74	42	2	0	0	0	0.972	1	53324	53324		0	0	1	1666600			53663	8789	39021	39334	52392	52392					-0.07754881610878783
TGGPLDSTLMS	11	Unmodified	_TGGPLDSTLMS_					0	0	0		KIAA1549|p.G902S|1|0.33|ENSG00000122778|chr7:138916922-138916922|C/T|missense_variant	KIAA1549|p.G902S|1|0.33|ENSG00000122778|chr7:138916922-138916922|C/T|missense_variant	KIAA1549|p.G902S|1|0.33|ENSG00000122778|chr7:138916922-138916922|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	539.7111206054688	2	539.757889	1077.50123	-0.96443	-0.00052056	-3.5016	-0.00189	-4.466	-0.0024106	539.7554962151472	36.645	0.25567	36.645	36.489	36.745	0					6	4	2	0	0	0	0.73078	1	12235	12235		8.1555	0.54658	1	528720			53664	14208	39022	39335	52393	52393					-0.034425211161988045
TGGQNKEVWFN	11	Unmodified	_TGGQNKEVWFN_					0	0	0		ENST00000601116.5_1_19:42056518-42056590:+|nuORF	ENST00000601116.5_1_19:42056518-42056590:+|nuORF	ENST00000601116.5_1_19:42056518-42056590:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	427.1558532714844	3	427.207043	1278.5993	-0.43642	-0.00018644	-0.79497	-0.00033962	-1.2314	-0.00052606	427.20632714928985	41.193	0.30467	41.968	41.794	42.098	0.77451					9	5	2	0	0	0	0.73502	1	15270	15270		4.1166	0	1	993320			53665	13871	39023	39336	52394	52394					-0.02885576476001006
TGGRVSLF	8	Unmodified	_TGGRVSLF_					0	0	0			REV__ENST00000452825.7_2_X:53254545-53254584:-|nuORF	REV__ENST00000452825.7_2_X:53254545-53254584:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	837.5179443359375	1	836.462478	835.455202	-0.29411	-0.00024601	0.15422	0.000129	-0.13988	-0.00011701	836.4625785620748	31.573	0.45556	31.573	31.414	31.87	0					14	8	2	0	0	0	0.77842	1	10153	10153		0.69038	0	1	2543700	+		53666	23452	39024	39337	52395	52395					0.030892465545207415
TGGRVSLF	8	Unmodified	_TGGRVSLF_					0	0	0			REV__ENST00000452825.7_2_X:53254545-53254584:-|nuORF	REV__ENST00000452825.7_2_X:53254545-53254584:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	836.462478	835.455202	-0.29411	-0.00024601	0.15422	0.000129	-0.13988	-0.00011701	836.4625785620748	31.573	0.45556	31.573	31.414	31.87	0	-0.035518	-2.2045E-05	NaN	0.69038	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2543700	+		53667	23452	39024	39337							0.030892465545207415
TGGRVSLF	8	Unmodified	_TGGRVSLF_					0	0	0			REV__ENST00000452825.7_2_X:53254545-53254584:-|nuORF	REV__ENST00000452825.7_2_X:53254545-53254584:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	836.462478	835.455202	-0.77212	-0.00064585	0.21756	0.00018198	-0.55456	-0.00046387	836.4626679115557	30.926	0.45461	31.644	31.417	31.872	0.71857	0.035518	3.0933E-05	NaN	0.69038	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3114600	+		53668	23452	39024	39337							0.030892465545207415
TGGVASGVIVQ	11	Unmodified	_TGGVASGVIVQ_					0	0	0			REV__nc|ENSG00000240268|A6NHM9|MOXD2P	REV__nc|ENSG00000240268|A6NHM9|MOXD2P	MULTI-SECPEP	A375_MHC_IP_R2	2	494.677490234375	2	494.277106	986.53966	-0.9361	-0.00046269	-3.9272	-0.0019411	-4.8633	-0.0024038	494.2776702725078	25.828	0.55937	26.488	26.144	26.703	0.65992					21	10	3	0	0	0	0.97182	1	8704	8704		6.1918	0	1	4196200	+		53669	27517	39025	39338	52396	52396					0.04585152580625618
TGGVVSMTIIL	11	Unmodified	_TGGVVSMTIIL_					0	0	0			REV__ENSG00000183255|ENST00000330938|PTTG1IP	REV__ENSG00000183255|ENST00000330938|PTTG1IP	MULTI-MSMS	A375_MHC_IP_R1	1	364.6047668457031	3	364.210737	1089.61038	0.23656	8.6159E-05	-0.40076	-0.00014596	-0.1642	-5.9802E-05	364.2105679154414	33.522	0.65855	33.522	33.04	33.698	0					35	12	4	0	0	0	0.73149	1	10761	10761		7.4771	7.4771	1	161920000	+		53670	21743	39026	39339	52397	52397					0.06916109573944595
TGHFEVLQN	9	Unmodified	_TGHFEVLQN_					0	0	0		nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK	nc|ENSG00000065534|Q15746-3|MYLK	nc|ENSG00000065534|Q15746-3|MYLK	MULTI-MSMS	A375_MHC_IP_R2	2	521.6897583007812	2	522.759081	1043.50361	-0.64008	-0.00033461	0.014797	7.7355E-06	-0.62528	-0.00032687	522.7588123189577	62.547	1.0139	63.289	62.774	63.788	0.74263					41	19	3	0	0	0	0.69674	1	23632	23632		7.2892	0.56607	1	2290600			53671	1387	39027	39340	52398	52398					-0.01640304596230635
TGHPWQVSL	9	Unmodified	_TGHPWQVSL_					0	0	0		ENSG00000187950|ENST00000537054|OVCH1;nc|ENSG00000187950|Q7RTY7|OVCH1	ENSG00000187950|ENST00000537054|OVCH1	ENSG00000187950|ENST00000537054|OVCH1	MULTI-SECPEP	A375_MHC_IP_R1	1	512.1609497070312	2	512.764166	1023.51378	-0.4587	-0.0002352	0.41111	0.0002108	-0.047582	-2.4398E-05	512.7642004390154	55.563	0.86555	55.563	54.975	55.841	0					18	16	2	0	0	0	0.69507	1	19973	19973		2.9952	0	1	2276000			53672	8867	39028	39341	52399	52399					0.0029630312899371347
TGHSFQIVR	9	Unmodified	_TGHSFQIVR_					0	0	0		nc|ENSG00000095917|Q9BZJ3-2|TPSD1;ENSG00000095917|ENST00000211076|TPSD1	nc|ENSG00000095917|Q9BZJ3-2|TPSD1	nc|ENSG00000095917|Q9BZJ3-2|TPSD1	MULTI-SECPEP	A375_MHC_IP_R2	2	522.1697998046875	2	522.78289	1043.55123	-0.85679	-0.00044792	-1.5166	-0.00079285	-2.3734	-0.0012408	522.7819684780595	57.74	0.25348	58.489	58.375	58.629	0.74894					6	4	2	0	0	0	0.60917	1	21793	21793		19.257	7.7623	1	1205600			53673	2050	39029	39342	52400	52400					0.031193943946163927
TGHVDAKW	8	Unmodified	_TGHVDAKW_					0	0	0			REV__ENSG00000196663|ENST00000359520|TECPR2	REV__ENSG00000196663|ENST00000359520|TECPR2	MULTI-MSMS	A375_MHC_IP_R2	2	457.1426696777344	2	457.229959	912.445365	-0.15192	-6.9462E-05	1.1258	0.00051474	0.97387	0.00044528	457.2293478490722	43.348	0.40562	44.12	43.826	44.231	0.7724					13	7	2	0	0	0	0.73946	1	16060	16060		23.148	2.2772	1	1148000	+		53674	22219	39030	39343	52401	52401					-0.014359414508703594
TGHVDAKW	8	Unmodified	_TGHVDAKW_					0	0	0			REV__ENSG00000196663|ENST00000359520|TECPR2	REV__ENSG00000196663|ENST00000359520|TECPR2	MULTI-SECPEP	A375_MHC_IP_R2	2	456.71124267578125	2	457.229959	912.445365	-0.15192	-6.9462E-05	1.1258	0.00051474	0.97387	0.00044528	457.2293478490722	43.348	0.40562	44.12	43.826	44.231	0.7724					13	7	2	0	0	0	0.92636	1	16031	16031		23.148	5.0134	1	1148000	+		53675	22219	39030	39343	52402	52402					-0.014359414508703594
TGKKKKKKKKK	11	Unmodified	_TGKKKKKKKKK_					0	0	0		nc|ENSG00000111142|P50579-3|METAP2;ENSG00000111142|ENST00000323666|METAP2;ENST00000263464.7_1_11:102193472-102193544:+|nuORF;ENST00000549136.1_1_12:95869884-95877058:+|nuORF	nc|ENSG00000111142|P50579-3|METAP2	nc|ENSG00000111142|P50579-3|METAP2	MSMS	A375_MHC_IP_R2	2	665.475830078125	2	665.474463	1328.93437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.17	1	103.94	103.44	104.44	0.76428								0	0	0	0.1636	1	39076	39076		0	0	1				53676	2966	39031	39344	52403	52403					0.283064231239905
TGKKKLAKKDP	11	Unmodified	_TGKKKLAKKDP_					0	0	0			REV__nc|ENSG00000112041|O00294-2|TULP1	REV__nc|ENSG00000112041|O00294-2|TULP1	MULTI-SECPEP	A375_MHC_IP_R1	1	404.5909423828125	3	405.259079	1212.75541	-0.37938	-0.00015375	3.6796	0.0014912	3.3002	0.0013374	405.93074449910654	23.192	0.30348	23.192	22.974	23.278	0					14	5	4	0	0	0	1.0004	1	6289	6289		2.6312	2.2646	1	3533700	+		53677	17706	39032	39345	52404	52404					0.15753913765274774
TGKRKQVRAYE	11	Unmodified	_TGKRKQVRAYE_					0	0	0			REV__nc|ENSG00000203896|Q9H400-2|LIME1	REV__nc|ENSG00000203896|Q9H400-2|LIME1	MULTI-MSMS	A375_MHC_IP_R2	2	669.0086059570312	2	668.378217	1334.74188	-0.5965	-0.00039869	-0.059441	-3.9729E-05	-0.65594	-0.00043842	668.377828459359	143.01	0.81049	143.04	142.64	143.45	0.030746					34	15	4	0	0	0	0.73822	1	55851	55851		1.0715	0	1	2980400	+		53678	22475	39033	39346	52405	52405					0.0879005598603726
TGKSKEELYK	10	Unmodified	_TGKSKEELYK_					0	0	0		ENST00000568971.5_1_16:19075311-19078921:-|nuORF	ENST00000568971.5_1_16:19075311-19078921:-|nuORF	ENST00000568971.5_1_16:19075311-19078921:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	592.221435546875	2	591.821878	1181.6292	-0.8506	-0.0005034	-0.73784	-0.00043667	-1.5884	-0.00094008	591.8219165782431	57.787	0.3562	58.536	58.323	58.679	0.74894					12	6	3	0	0	0	0.8528	1	21850	21850		21.537	5.3879	1	2159600			53679	13586	39034	39347	52406	52406					0.04565362469338652
TGKTYVGLKI	10	Unmodified	_TGKTYVGLKI_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MSMS	A375_MHC_IP_R2	2	360.6078186035156	3	360.553492	1078.63865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.754	1	40.528	40.028	41.028	0.77451								0	0	0	0.15475	1	14695	14695		5.4027	0.87384	1				53680	3882	39035	39348	52407	52407					0.1024717554550989
TGKVLGLAH	9	Unmodified	_TGKVLGLAH_					0	0	0		nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-SECPEP	A375_MHC_IP_R2	2	894.9298095703125	1	895.535978	894.528701	-0.23675	-0.00021202	0.51061	0.00045727	0.27386	0.00024525	895.5365323024381	113.64	1.9778	114.35	113.72	115.7	0.70985					57	38	2	0	0	0	0.77834	1	43094	43094		4.756	0	1	41000000			53681	5841	39036	39349	52408	52408					0.07721794996996323
TGKVLGLAH	9	Unmodified	_TGKVLGLAH_					0	0	0		nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-MATCH	A375_MHC_IP_R1	1		1	895.535978	894.528701	0.29649	0.00026551	0.69232	0.00061999	0.9888	0.00088551	895.536807360052	114.31	1.7802	114.31	113.75	115.53	0	-0.018504	0.00014012	NaN	4.756	44	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39608000			53682	5841	39036	39349							0.07721794996996323
TGKYCEMAF	9	Unmodified	_TGKYCEMAF_					0	0	0		ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	MSMS	A375_MHC_IP_R2	2	525.183837890625	2	525.225171	1048.43579	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.854	1	84.594	84.094	85.094	0.73962								0	0	0	0.15486	1	31874	31874		8.5933	0	1				53683	1739	39037	39350	52409	52409					-0.08649213842932113
TGLHVSSH	8	Unmodified	_TGLHVSSH_					0	0	0			REV__ENST00000514033.1_1_4:38691527-38691614:+|nuORF	REV__ENST00000514033.1_1_4:38691527-38691614:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	837.1769409179688	1	837.421342	836.414065	-0.65301	-0.00054684	2.5232	0.002113	1.8702	0.0015661	837.4254665120643	118.68	0.40485	119.29	119.15	119.56	0.60909					11	7	2	0	0	0	0.91495	1	45229	45229		12.532	8.2023	1	17216000	+		53684	25646	39038	39351	52410	52410					-0.010685144849503558
TGLIHPSVA	9	Unmodified	_TGLIHPSVA_					0	0	0		ENSG00000111701|ENST00000229304|APOBEC1	ENSG00000111701|ENST00000229304|APOBEC1	ENSG00000111701|ENST00000229304|APOBEC1	MULTI-SECPEP	A375_MHC_IP_R1	1	448.1558837890625	2	447.75581	893.497067	-0.22037	-9.8674E-05	0.6106	0.0002734	0.39023	0.00017473	447.75646147226826	52.738	1.3177	52.738	52.085	53.403	0					32	25	2	0	0	0	0.28475	1	18748	18748		48.346	2.3249	1	3913000			53685	3020	39039	39352	52411	52411					0.04605802243054313
TGLIHPSVA	9	Unmodified	_TGLIHPSVA_					0	0	0		ENSG00000111701|ENST00000229304|APOBEC1	ENSG00000111701|ENST00000229304|APOBEC1	ENSG00000111701|ENST00000229304|APOBEC1	MULTI-SECPEP	A375_MHC_IP_R2	2	448.1559143066406	2	447.75581	893.497067	-0.59729	-0.00026744	1.4888	0.00066661	0.8915	0.00039917	447.7566819311628	51.805	1.622	52.557	51.41	53.032	0.75225					37	31	2	0	0	0	0.3607	1	19513	19513		42.095	7.6928	1	3925100			53686	3020	39039	39352	52412	52412					0.04605802243054313
TGLMEYCL	8	Unmodified	_TGLMEYCL_					0	0	0		ENSG00000119283|ENST00000366653|TRIM67;nc|ENSG00000100505|Q9C026-5|TRIM9;nc|ENSG00000100505|Q9C026|TRIM9;nc|ENSG00000119283|Q6ZTA4-2|TRIM67;ENSG00000100505|ENST00000684578|TRIM9;nc|ENSG00000100505|Q9C026-4|TRIM9	ENSG00000119283|ENST00000366653|TRIM67	ENSG00000119283|ENST00000366653|TRIM67	MULTI-MSMS	A375_MHC_IP_R2	2	465.60870361328125	2	465.208989	928.403426	-0.92233	-0.00042908	0.78906	0.00036708	-0.13328	-6.2001E-05	465.2092568134889	29.956	0.40657	30.655	30.485	30.892	0.69872					10	7	2	0	0	0	0.72761	1	10526	10526		26.341	6.9023	1	1833500			53687	3578	39040	39353	52413	52413					-0.06364001245901818
TGLMEYCL	8	Unmodified	_TGLMEYCL_					0	0	0		ENSG00000119283|ENST00000366653|TRIM67;nc|ENSG00000100505|Q9C026-5|TRIM9;nc|ENSG00000100505|Q9C026|TRIM9;nc|ENSG00000119283|Q6ZTA4-2|TRIM67;ENSG00000100505|ENST00000684578|TRIM9;nc|ENSG00000100505|Q9C026-4|TRIM9	ENSG00000119283|ENST00000366653|TRIM67	ENSG00000119283|ENST00000366653|TRIM67	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	465.208989	928.403426	-0.51522	-0.00023968	0.41793	0.00019443	-0.097289	-4.526E-05	465.2091371089703	30.728	0.30456	30.728	30.603	30.908	0	0.036573	-5.8934E-05	NaN	26.341	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3363300			53688	3578	39040	39353							-0.06364001245901818
TGLNSFDEY	9	Unmodified	_TGLNSFDEY_					0	0	0			REV__ENSG00000140740|ENST00000268379|UQCRC2	REV__ENSG00000140740|ENST00000268379|UQCRC2	MULTI-MSMS	A375_MHC_IP_R2	2	523.1896362304688	2	523.227279	1044.44001	-0.49006	-0.00025641	1.055	0.00055199	0.56491	0.00029558	523.2267486778074	88.121	0.3548	88.853	88.671	89.026	0.7318					9	6	2	0	0	0	0.65721	1	33551	33551		10.824	0	1	658260	+		53689	19228	39041	39354	52414	52414					-0.08043709823982681
TGLRNRNGSA	10	Unmodified	_TGLRNRNGSA_					0	0	0		ENSG00000176142|ENST00000319172|TMEM39A;ENST00000486159.5_1_3:119156911-119180963:-|nuORF;nc|ENSG00000176142|Q9NV64-2|TMEM39A;ENST00000486235.5_1_3:119165863-119180852:-|nuORF	ENSG00000176142|ENST00000319172|TMEM39A	ENSG00000176142|ENST00000319172|TMEM39A	MULTI-SECPEP	A375_MHC_IP_R2	2	522.6575927734375	2	523.278503	1044.54245	-0.62527	-0.00032719	0.68947	0.00036078	0.0642	3.3595E-05	523.2789138448657	27.099	0.30782	27.777	27.587	27.895	0.67857					7	5	2	0	0	0	0.93405	1	9216	9216		2.7352	2.7352	1	1974000			53690	8003	39042	39355	52415	52415					0.021964207581504525
TGLSDSQVR	9	Unmodified	_TGLSDSQVR_					0	0	0		nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1;ENST00000462818.1_1_3:136219063-136323180:-|nuORF;ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2;nc|ENSG00000292277|Q9UJ98|STAG3;ENSG00000066923|ENST00000615138|STAG3;nc|ENSG00000292277|Q9UJ98-3|STAG3;nc|ENSG00000292277|Q9UJ98-2|STAG3	nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000292277|Q9UJ98|STAG3	ENSG00000101972|ENST00000371145|STAG2	MULTI-SECPEP	A375_MHC_IP_R1	1	482.1502380371094	2	481.748713	961.482873	-0.15048	-7.2492E-05	1.4672	0.00070682	1.3167	0.00063432	481.7503634621012	35.75	0.46034	35.75	35.472	35.932	0					17	8	3	0	0	0	0.47368	1	11955	11955		20.454	2.3073	1	2371200			53691	2340;3521;1422	39043	39356	52416	52416					0.0005910502410415575
TGLSLGRTL	9	Unmodified	_TGLSLGRTL_					0	0	0		ENST00000572275.1_1_17:7826422-7827118:-|nuORF	ENST00000572275.1_1_17:7826422-7827118:-|nuORF	ENST00000572275.1_1_17:7826422-7827118:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	459.6397399902344	2	459.274367	916.53418	-0.2024	-9.2959E-05	0.0297	1.3641E-05	-0.1727	-7.9319E-05	459.27424879204455	40.716	0.30352	40.716	40.609	40.913	0					9	5	2	0	0	0	0.75466	1	14088	14088		7.9102	0	1	1228900			53692	13616	39044	39357	52417	52417					0.07257473788820334
TGLSRLSSW	9	Unmodified	_TGLSRLSSW_					0	0	0		ENST00000569796.1_1_16:2278422-2280215:+|nuORF	ENST00000569796.1_1_16:2278422-2280215:+|nuORF	ENST00000569796.1_1_16:2278422-2280215:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	504.1688537597656	2	503.769448	1005.52434	-0.40617	-0.00020462	-0.22673	-0.00011422	-0.6329	-0.00031884	503.7697681290729	58.073	0.81206	58.073	57.618	58.43	0					16	12	2	0	0	0	0.16237	1	20862	20862		47.732	0	1	3172400			53693	13595	39045	39358	52418	52418					0.021802857834245515
TGLSRLSSW	9	Unmodified	_TGLSRLSSW_					0	0	0		ENST00000569796.1_1_16:2278422-2280215:+|nuORF	ENST00000569796.1_1_16:2278422-2280215:+|nuORF	ENST00000569796.1_1_16:2278422-2280215:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	504.16876220703125	2	503.769448	1005.52434	-1.0503	-0.00052912	-0.15908	-8.014E-05	-1.2094	-0.00060926	503.7696985250588	57.183	0.71436	57.933	57.662	58.376	0.75014					28	13	3	0	0	0	0.46121	1	21682	21682		20.581	0	1	4301000			53694	13595	39045	39358	52419	52419					0.021802857834245515
TGNALNNYSF	10	Unmodified	_TGNALNNYSF_					0	0	0			REV__tr|U7SV19|U7SV19_FUSNU4-methyl-5(B-hydroxyethyl)-thiazolemonophosphatebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01481PE=4SV=1	REV__tr|U7SV19|U7SV19_FUSNU4-methyl-5(B-hydroxyethyl)-thiazolemonophosphatebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01481PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	367.2678527832031	3	367.505089	1099.49344	-0.14876	-5.4671E-05	-0.29127	-0.00010704	-0.44004	-0.00016172	367.5049860286389	19.994	0.65786	20.604	20.197	20.855	0.61029					17	12	2	0	0	0	0.94269	1	6047	6047		5.7834	3.2849	1	592030	+		53695	28578	39046	39359	52420	52420					-0.052329123214803985
TGNEIREKF	9	Unmodified	_TGNEIREKF_					0	0	0		tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1	tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1	tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	364.9690856933594	3	365.192734	1092.55637	0.045958	1.6784E-05	-2.5859	-0.00094434	-2.5399	-0.00092756	365.19209732587825	27.676	0.45488	28.354	28.149	28.604	0.67857					17	8	3	0	0	0	0.71541	1	9588	9588		4.5289	0	1	2687100			53696	29735	39047	39360	52421	52421					0.01379653466574382
TGPAEDRAAR	10	Unmodified	_TGPAEDRAAR_					0	0	0		ENSG00000203499|ENST00000527139|IQANK1	ENSG00000203499|ENST00000527139|IQANK1	ENSG00000203499|ENST00000527139|IQANK1	MULTI-SECPEP	A375_MHC_IP_R1	1	522.6580200195312	2	522.265062	1042.51557	-0.69916	-0.00036515	0.037132	1.9393E-05	-0.66203	-0.00034575	522.2649721608827	27.861	0.55412	27.861	27.684	28.238	0					17	10	2	0	0	0	0.81532	1	8475	8475		14.405	14.405	1	5182900			53697	9389	39048	39361	52422	52422					-0.0039868785306680365
TGPEAGNTE	9	Unmodified	_TGPEAGNTE_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MSMS	A375_MHC_IP_R1	1	438.1534118652344	2	438.190697	874.36684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.97	1	71.97	71.47	72.47	0								0	0	0	0.15486	1	26171	26171		7.2892	0	1				53698	3825	39049	39362	52423	52423					-0.07536838546616309
TGPHPPGA	8	Unmodified	_TGPHPPGA_					0	0	0			REV__ENST00000498554.5_1_19:2096914-2097955:+|nuORF	REV__ENST00000498554.5_1_19:2096914-2097955:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	733.3212280273438	1	733.362764	732.355488	-0.95963	-0.00070375	-0.85519	-0.00062716	-1.8148	-0.0013309	733.3624170431764	67.974	0.30436	67.974	67.854	68.159	0					8	5	2	0	0	0	0.77781	1	24637	24637		2.8892	0	1	636540	+		53699	25477	39050	39363	52424	52424					-0.02139571059433365
TGPLGLGAP	9	Unmodified	_TGPLGLGAP_					0	0	0			REV__ENST00000488285.1_1_9:130486913-130493681:+|nuORF	REV__ENST00000488285.1_1_9:130486913-130493681:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	392.1241760253906	2	391.723978	781.433404	0.56936	0.00022303	0.25607	0.00010031	0.82543	0.00032334	391.72377950051634	48.668	0.40551	48.668	48.476	48.882	0					13	7	2	0	0	0	0.65721	1	17234	17234		10.824	0	1	1296400	+		53700	25346	39051	39364	52425	52425					0.033944418059491
TGPLGLGAP	9	Unmodified	_TGPLGLGAP_					0	0	0			REV__ENST00000488285.1_1_9:130486913-130493681:+|nuORF	REV__ENST00000488285.1_1_9:130486913-130493681:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	392.1241149902344	2	391.723978	781.433404	-0.62824	-0.0002461	1.0485	0.00041073	0.42027	0.00016463	391.72416654600676	52.507	0.40536	53.259	53.083	53.489	0.75225					13	7	2	0	0	0	0.65246	1	19826	19826		21.747	0	1	2677500	+		53701	25346	39051	39364	52426	52426					0.033944418059491
TGPPLPPEL	9	Unmodified	_TGPPLPPEL_					0	0	0			REV__ENSG00000169136|ENST00000423777|ATF5	REV__ENSG00000169136|ENST00000423777|ATF5	MULTI-SECPEP	A375_MHC_IP_R1	1	461.157958984375	2	460.758018	919.501483	-0.13226	-6.0941E-05	-0.084331	-3.8856E-05	-0.21659	-9.9797E-05	460.7579373986602	71.016	0.56435	71.016	70.698	71.262	0					16	10	2	0	0	0	0.1277	1	25808	25808		64.236	13.381	1	2251200	+		53702	20909	39052	39365	52427	52427					0.038512666659471506
TGPTMPVYN	9	Unmodified	_TGPTMPVYN_					0	0	0			REV__ENSG00000109458|ENST00000262994|GAB1	REV__ENSG00000109458|ENST00000262994|GAB1	MSMS	A375_MHC_IP_R1	1	490.1298522949219	2	490.23131	978.448068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.486	1	31.486	30.986	31.986	0								0	0	0	0.15486	1	10084	10084		10.824	1.4765	1		+		53703	17579	39053	39366	52428	52428					-0.04201854108225689
TGPVASSDML	10	Unmodified	_TGPVASSDML_					0	0	0			REV__ENST00000461680.1_1_3:51673299-51697433:+|nuORF	REV__ENST00000461680.1_1_3:51673299-51697433:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	489.1640625	2	489.23405	976.453547	0.043342	2.1205E-05	-0.60593	-0.00029644	-0.56259	-0.00027524	489.2335954556085	45.492	0.55572	45.492	45.081	45.636	0					12	10	2	0	0	0	0.53946	1	15791	15791		25.399	2.2509	1	1004100	+		53704	20446	39054	39367	52429	52429					-0.035621753164150505
TGPVLNLHA	9	Unmodified	_TGPVLNLHA_					0	0	0			REV__nc|ENSG836|P61566|ERVK-24_env	REV__nc|ENSG836|P61566|ERVK-24_env	MULTI-SECPEP	A375_MHC_IP_R1	1	460.63525390625	2	461.261259	920.507966	-0.29977	-0.00013827	0.30567	0.00014099	0.0058964	2.7198E-06	461.2612744198819	40.951	0.60535	40.951	40.609	41.215	0					18	11	2	0	0	0	0.71541	1	14032	14032		11.64	5.4345	1	1317400	+		53705	27572	39055	39368	52430	52430					0.0445320461733445
TGPVVREEVSR	11	Unmodified	_TGPVVREEVSR_					0	0	0		ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9	ENSG00000177200|ENST00000447540|CHD9	ENSG00000177200|ENST00000447540|CHD9	MSMS	A375_MHC_IP_R2	2	614.6558837890625	2	614.835851	1227.65715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.38	1	116.07	115.57	116.57	0.68999								0	0	0	0.15488	1	43492	43492		17.443	5.9479	1				53706	8069	39056	39369	52431	52431					0.052426854494115105
TGQCNCHPKF	10	Unmodified	_TGQCNCHPKF_					0	0	0		ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	MULTI-SECPEP	A375_MHC_IP_R1	1	378.26068115234375	3	378.832154	1133.47463	0.20523	7.7746E-05	2.3873	0.00090439	2.5925	0.00098214	378.83324380901263	25.669	0.30515	25.669	25.511	25.816	0					8	5	2	0	0	0	0.93799	1	7536	7536		1.7423	0.54893	1	1881400			53707	9059	39057	39370	52432	52432					-0.08676488488549694
TGQDILAL	8	Unmodified	_TGQDILAL_					0	0	0		ENST00000604687.1_1_21:10475839-10476034:-|nuORF	ENST00000604687.1_1_21:10475839-10476034:-|nuORF	ENST00000604687.1_1_21:10475839-10476034:-|nuORF	MSMS	A375_MHC_IP_R1	1	415.6478576660156	2	415.734543	829.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.225	1	32.225	31.725	32.725	0								0	0	0	0.16876	1	10393	10393		10.183	0	1				53708	13904	39058	39371	52433	52433					0.03298407114800739
TGQNDQEDED	10	Unmodified	_TGQNDQEDED_					0	0	0			REV__PBRM1|p.G166E|1|0.49|ENSG00000163939|chr3:52662164-52662164|C/T|missense_variant	REV__PBRM1|p.G166E|1|0.49|ENSG00000163939|chr3:52662164-52662164|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	575.1644897460938	2	575.710179	1149.4058	-0.20108	-0.00011576	3.0093	0.0017325	2.8082	0.0016167	575.7117847001915	50.649	0.356	50.649	50.408	50.764	0					10	6	2	0	0	0	0.92957	1	17951	17951		6.2058	1.4498	1	1034800	+		53709	27719	39059	39372	52434	52434					-0.16292202773570352
TGQQHRQRC	9	Unmodified	_TGQQHRQRC_					0	0	0		nc|ENSG00000178287|Q6PDA7-3|SPAG11A;nc|ENSG00000178287|Q6PDA7-2|SPAG11A	nc|ENSG00000178287|Q6PDA7-3|SPAG11A	nc|ENSG00000178287|Q6PDA7-3|SPAG11A	MULTI-SECPEP	A375_MHC_IP_R2	2	371.93255615234375	3	371.849196	1112.52576	0.249	9.259E-05	-1.1166	-0.00041519	-0.86757	-0.00032261	371.8489518091695	30.098	0.25352	30.817	30.658	30.911	0.71857					7	4	2	0	0	0	0.8028	1	10594	10594		0.20686	0	1	828100			53710	14789	39060	39373	52435	52435					-0.026004033994468045
TGQQYQVPC	9	Unmodified	_TGQQYQVPC_					0	0	0		nc|ENSG00000089101|Q8NHU2-4|CFAP61;ENSG00000089101|ENST00000245957|CFAP61;nc|ENSG00000089101|Q8NHU2-5|CFAP61;nc|ENSG00000089101|Q8NHU2-6|CFAP61	nc|ENSG00000089101|Q8NHU2-4|CFAP61	nc|ENSG00000089101|Q8NHU2-4|CFAP61	MSMS	A375_MHC_IP_R1	1	512.1580200195312	2	512.231842	1022.44913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.624	1	45.624	45.124	46.124	0								0	0	0	0.15142	1	15974	15974		19.257	1.122	1				53711	1914	39061	39374	52436	52436					-0.06119639739313243
TGQYTLFP	8	Unmodified	_TGQYTLFP_					0	0	0		nc|ENSG00000090534|P40225-3|THPO;nc|ENSG00000090534|P40225-2|THPO;ENSG00000090534|ENST00000647395|THPO	nc|ENSG00000090534|P40225-3|THPO	nc|ENSG00000090534|P40225-3|THPO	MULTI-MSMS	A375_MHC_IP_R2	2	464.63262939453125	2	463.734543	925.454533	-0.5241	-0.00024304	-2.6708	-0.0012386	-3.1949	-0.0014816	463.7344588454627	42.241	1.5773	43.013	42.451	44.028	0.7724					69	30	3	0	0	0	0.74945	1	15745	15745		20.454	2.3073	1	22538000			53712	1955	39062	39375	52437	52437					-0.011175928851798744
TGRKKKGRY	9	Unmodified	_TGRKKKGRY_					0	0	0			REV__ENSG00000102763|ENST00000379310|VWA8	REV__ENSG00000102763|ENST00000379310|VWA8	MSMS	A375_MHC_IP_R1	1	547.3594360351562	2	547.333082	1092.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.657	1	97.657	97.157	98.157	0								0	0	0	0.15486	1	35878	35878		4.756	0	1		+		53713	17230	39063	39376	52438	52438					0.10899051448291175
TGRRNMLAGK	10	Unmodified	_TGRRNMLAGK_					0	0	0		ENST00000493000.5_1_1:57206466-57216840:-|nuORF;ENSG00000187889|ENST00000343433|FYB2	ENST00000493000.5_1_1:57206466-57216840:-|nuORF	ENST00000493000.5_1_1:57206466-57216840:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	369.25762939453125	3	368.541592	1102.60295	-0.2616	-9.641E-05	-0.0076211	-2.8087E-06	-0.26922	-9.9218E-05	368.54183381643577	37.307	0.40955	38.078	37.917	38.327	0.7709					9	7	2	0	0	0	0.92227	1	13632	13632		2.8433	0	1	1327200			53714	8865	39064	39377	52439	52439					0.05574814816873186
TGRRPHCSL	9	Unmodified	_TGRRPHCSL_					0	0	0		ENST00000433809.1_1_6:30523661-30523859:-|nuORF	ENST00000433809.1_1_6:30523661-30523859:-|nuORF	ENST00000433809.1_1_6:30523661-30523859:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	513.9313354492188	2	513.766717	1025.51888	-0.65066	-0.00033429	-0.9969	-0.00051217	-1.6476	-0.00084646	513.7659563618674	44.205	0.75906	44.975	44.53	45.289	0.7691					23	14	2	0	0	0	0.58271	1	16443	16443		14.838	0.93222	1	1864900			53715	11896	39065	39378	52440	52440					0.007142837199580754
TGRRRRRLRRR	11	Unmodified	_TGRRRRRLRRR_					0	0	0		ENSG00000183579|ENST00000544604|ZNRF3	ENSG00000183579|ENST00000544604|ZNRF3	ENSG00000183579|ENST00000544604|ZNRF3	MSMS	A375_MHC_IP_R2	2	769.8723754882812	2	769.993606	1537.97266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.8	1	126.09	125.59	126.59	0.2951								0	0	0	0.16358	1	49146	49146		0.30703	0.30703	1				53716	8507	39066	39379	52441	52441					0.22519166601887264
TGRTIEKIC	9	Unmodified	_TGRTIEKIC_					0	0	0		ENSG00000105398|ENST00000222002|SULT2A1	ENSG00000105398|ENST00000222002|SULT2A1	ENSG00000105398|ENST00000222002|SULT2A1	MSMS	A375_MHC_IP_R2	2	510.984130859375	2	510.778959	1019.54336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.191	1	97.947	97.447	98.447	0.75586								0	0	0	0.12568	1	36892	36892		34.102	0	1				53717	2600	39067	39380	52442	52442					0.034374990828155205
TGRTRLSQ	8	Unmodified	_TGRTRLSQ_					0	0	0			REV__ENST00000503611.5_1_4:159092441-159092582:+|nuORF	REV__ENST00000503611.5_1_4:159092441-159092582:+|nuORF	MSMS	A375_MHC_IP_R2	2	459.6587829589844	2	459.759415	917.504277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.132	1	71.866	71.366	72.366	0.73421								0	0	0	0.16876	1	26976	26976		15.847	3.3156	1		+		53718	25519	39068	39381	52443	52443					0.042225348434726584
TGRVLLKKIL	10	Unmodified	_TGRVLLKKIL_					0	0	0		HTATIP2|p.E37K|1|0.42|ENSG00000109854|chr11:20364346-20364346|G/A|missense_variant	HTATIP2|p.E37K|1|0.42|ENSG00000109854|chr11:20364346-20364346|G/A|missense_variant	HTATIP2|p.E37K|1|0.42|ENSG00000109854|chr11:20364346-20364346|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	570.6896362304688	2	570.894983	1139.77541	-0.19685	-0.00011238	1.3457	0.00076826	1.1489	0.00065588	571.3989345033058	68.055	0.15361	68.79	68.714	68.867	0.73511					4	2	2	0	0	0	0.94862	1	25814	25814		0	0	1	410860			53719	14137	39069	39382	52444	52444					0.21111709495903597
TGSAPPFL	8	Unmodified	_TGSAPPFL_					0	0	0			REV__ENST00000325089.7_1_13:88324908-88325049:+|nuORF	REV__ENST00000325089.7_1_13:88324908-88325049:+|nuORF	MSMS	A375_MHC_IP_R1	1	395.1475524902344	2	395.210704	788.406855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.476	1	51.476	50.976	51.976	0								0	0	0	0.16876	1	18273	18273		20.871	0	1		+		53720	23595	39070	39383	52445	52445					0.0041875291461792585
TGSAPPFL	8	Unmodified	_TGSAPPFL_					0	0	0			REV__ENST00000325089.7_1_13:88324908-88325049:+|nuORF	REV__ENST00000325089.7_1_13:88324908-88325049:+|nuORF	MSMS	A375_MHC_IP_R2	2	395.1474914550781	2	395.210704	788.406855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.507	1	51.262	50.762	51.762	0.75406								0	0	0	0.16876	1	18995	18995		28.173	0	1		+		53721	23595	39070	39383	52446	52446					0.0041875291461792585
TGSFLSPW	8	Unmodified	_TGSFLSPW_					0	0	0		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;ENST00000461187.5_1_2:130911777-130913705:-|nuORF;ENST00000438378.2_1_2:132275414-132277996:+|nuORF;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;nc|ENSG00000136699|Q9NXE4-5|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	MSMS	A375_MHC_IP_R1	1	447.64007568359375	2	447.721436	893.428318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.411	1	40.411	39.911	40.911	0								0	0	0	0.16876	1	13885	13885		14.582	0	1				53722	4806	39071	39384	52447	52447					-0.022658620566744503
TGSHAVDWG	9	Unmodified	_TGSHAVDWG_					0	0	0			REV__ENST00000336219.3_1_14:105477886-105478126:-|nuORF	REV__ENST00000336219.3_1_14:105477886-105478126:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	465.1944885253906	2	465.209224	928.403895	-0.083017	-3.862E-05	0.61927	0.00028809	0.53626	0.00024947	465.20899814933034	35.868	0.55908	35.868	35.625	36.184	0					18	10	2	0	0	0	0.55818	1	11919	11919		16.942	1.0951	1	4647000	+		53723	23680	39072	39385	52448	52448					-0.06317122210191428
TGSLILVLEF	10	Unmodified	_TGSLILVLEF_					0	0	0			REV__ENSG00000177807|ENST00000644903|KCNJ10	REV__ENSG00000177807|ENST00000644903|KCNJ10	MULTI-MSMS	A375_MHC_IP_R2	2	364.5891418457031	3	364.549747	1090.62741	-0.27785	-0.00010129	-1.5637	-0.00057005	-1.8416	-0.00067134	364.5490790521673	18.905	0.18035	19.508	19.452	19.633	0.60308					5	3	2	0	0	0	0.70027	1	5642	5642		12.175	0.53445	1	1944700	+		53724	21472	39073	39386	52449	52449					0.0857235345135905
TGSPIMEEKRD	11	Unmodified	_TGSPIMEEKRD_					0	0	0		nc|ENSG00000126016|Q4VCS5-2|AMOT;ENSG00000126016|ENST00000371959|AMOT	nc|ENSG00000126016|Q4VCS5-2|AMOT	nc|ENSG00000126016|Q4VCS5-2|AMOT	MULTI-SECPEP	A375_MHC_IP_R1	1	632.4705200195312	2	631.805902	1261.59725	-0.78506	-0.00049601	-3.4452	-0.0021767	-4.2303	-0.0026727	631.8033998030205	80.882	0.35594	80.882	80.592	80.948	0					9	6	2	0	0	0	0.98934	1	29446	29446		12.873	4.1272	1	1122700			53725	4021	39074	39387	52450	52450					-0.023083732761278952
TGSTDKTVRLW	11	Unmodified	_TGSTDKTVRLW_					0	0	0		ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	MULTI-MSMS	A375_MHC_IP_R2	2	422.6291198730469	3	421.894577	1262.6619	-0.25276	-0.00010664	-0.12592	-5.3125E-05	-0.37868	-0.00015976	421.894448111908	44.799	0.45926	45.569	45.239	45.698	0.7691					16	8	3	0	0	0	0.2687	1	16721	16721		49.159	31.587	1	2729800			53726	4714	39075	39388	52451	52451					0.04107569592179061
TGSTDKTVRLW	11	Unmodified	_TGSTDKTVRLW_					0	0	0		ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	MULTI-MATCH	A375_MHC_IP_R1	1		3	421.894577	1262.6619	0.21074	8.8909E-05	0.126	5.3161E-05	0.33674	0.00014207	421.89465878126475	45.676	0.55654	45.676	45.384	45.941	0	0.053497	0.00010704	NaN	49.159	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3264100			53727	4714	39075	39388							0.04107569592179061
TGSTPEVSTV	10	Unmodified	_TGSTPEVSTV_					0	0	0		ENSG00000106688|ENST00000262352|SLC1A1	ENSG00000106688|ENST00000262352|SLC1A1	ENSG00000106688|ENST00000262352|SLC1A1	MULTI-SECPEP	A375_MHC_IP_R2	2	488.4693298339844	2	489.242929	976.471305	-0.37329	-0.00018263	0.64053	0.00031337	0.26724	0.00013075	489.2433604031709	47.206	0.30629	47.967	47.817	48.123	0.76127					7	5	2	0	0	0	0.85226	1	17667	17667		10.074	0	1	894180			53728	2707	39076	39389	52452	52452					-0.017871367898806056
TGSVPVSMATV	11	Unmodified	_TGSVPVSMATV_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	MSMS	A375_MHC_IP_R1	1	524.6843872070312	2	524.7708	1047.52705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.55	1	103.55	103.05	104.05	0								0	0	0	0.14647	1	38032	38032		22.736	1.1993	1				53729	6794	39077	39390	52453	52453					0.005183731260558488
TGSYAYGPIS	10	Unmodified	_TGSYAYGPIS_					0	0	0			REV__nc|ENSG00000146839|Q9Y493-3|ZAN	REV__nc|ENSG00000146839|Q9Y493-3|ZAN	MULTI-SECPEP	A375_MHC_IP_R2	2	508.6401672363281	2	508.24019	1014.46583	-0.86037	-0.00043727	0.86172	0.00043796	0.0013562	6.8926E-07	508.2406357432872	62.346	0.76104	63.089	62.673	63.434	0.74263					21	14	2	0	0	0	0.8125	1	23637	23637		18.146	0	1	1461900	+		53730	27278	39078	39391	52454	52454					-0.0408281558170529
TGTDANWLVI	10	Unmodified	_TGTDANWLVI_					0	0	0			REV__ENSG00000120008|ENST00000263461|WDR11	REV__ENSG00000120008|ENST00000263461|WDR11	MULTI-SECPEP	A375_MHC_IP_R2	2	545.68798828125	2	545.282389	1088.55022	-0.88872	-0.0004846	0.61546	0.0003356	-0.27326	-0.000149	545.2825155964205	66.767	1.3224	67.503	67.138	68.461	0.73631					44	25	3	0	0	0	0.27978	1	25637	25637		43.772	9.67	1	6887900	+		53731	18109	39079	39392	52455	52455					0.009491352350323723
TGTEGYTI	8	Unmodified	_TGTEGYTI_					0	0	0			REV__ENST00000492816.6_1_2:216249553-216256565:-|nuORF	REV__ENST00000492816.6_1_2:216249553-216256565:-|nuORF	MSMS	A375_MHC_IP_R2	2	421.1502685546875	2	421.200533	840.386513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.836	1	38.611	38.111	39.111	0.77451								0	0	0	0.16876	1	13875	13875		14.582	0	1		+		53732	25417	39080	39393	52456	52456					-0.04006462535846822
TGTKCIKKY	9	Unmodified	_TGTKCIKKY_					0	0	0			REV__tr|U7SNA1|U7SNA1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01763PE=4SV=1	REV__tr|U7SNA1|U7SNA1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01763PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	521.66455078125	2	521.291702	1040.56885	-0.60674	-0.00031629	1.3167	0.00068637	0.70993	0.00037008	521.2932482711129	105.54	1.019	106.3	105.87	106.88	0.75977					25	19	2	0	0	0	0.73363	1	39956	39956		3.5965	1.5367	1	1295300	+		53733	28317	39081	39394	52457	52457					0.05018973605251631
TGTPHALIV	9	Unmodified	_TGTPHALIV_					0	0	0		ENST00000466855.1_1_7:150774601-150775027:-|nuORF;ENST00000460980.5_1_7:150773814-150775027:-|nuORF	ENST00000466855.1_1_7:150774601-150775027:-|nuORF	ENST00000466855.1_1_7:150774601-150775027:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	455.16375732421875	2	454.763635	907.512717	-0.2817	-0.00012811	1.7551	0.00079817	1.4734	0.00067007	454.76402229146316	66.946	1.1196	67.682	67.035	68.155	0.73631					39	21	3	0	0	0	0.47368	1	25328	25328		26.884	0	1	2949000			53734	12178	39082	39395	52458	52458					0.05526088760097991
TGTSVSPVAL	10	Unmodified	_TGTSVSPVAL_					0	0	0		nc|ENSG00000138315|Q8WWZ8-2|OIT3;ENSG00000138315|ENST00000334011|OIT3	nc|ENSG00000138315|Q8WWZ8-2|OIT3	nc|ENSG00000138315|Q8WWZ8-2|OIT3	MULTI-SECPEP	A375_MHC_IP_R2	2	466.6581115722656	2	466.258382	930.502212	-1.0061	-0.00046909	0.49507	0.00023083	-0.511	-0.00023826	466.25850174632643	38.528	0.76311	39.303	38.997	39.76	0.77451					26	14	3	0	0	0	0.61429	1	14206	14206		30.637	0	1	3598100			53735	4978	39083	39396	52459	52459					0.03418061315016985
TGVDNHNVFSL	11	Unmodified	_TGVDNHNVFSL_					0	0	0			REV__USH2A|p.D347H|1|0.31|ENSG00000042781|chr1:216325409-216325409|C/G|missense_variant	REV__USH2A|p.D347H|1|0.31|ENSG00000042781|chr1:216325409-216325409|C/G|missense_variant	MSMS	A375_MHC_IP_R1	1	401.5968017578125	3	401.531527	1201.57275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.305	1	19.305	18.805	19.805	0								0	0	0	0.16249	1	4673	4673		2.6312	0	1		+		53736	28961	39084	39397	52460	52460					-0.019972653673448804
TGVIIHPAE	9	Unmodified	_TGVIIHPAE_					0	0	0			REV__ENST00000448133.1_1_13:61211649-61211793:-|nuORF	REV__ENST00000448133.1_1_13:61211649-61211793:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	469.7314453125	2	468.761092	935.507631	-0.38038	-0.00017831	0.39237	0.00018393	0.011991	5.6208E-06	468.76121880343413	58.404	0.81213	58.404	57.873	58.685	0					30	15	3	0	0	0	0.4867	1	20990	20990		20.454	3.3407	1	7592100	+		53737	20225	39085	39398	52461	52461					0.03729784897461741
TGVLFKPSLL	10	Unmodified	_TGVLFKPSLL_					0	0	0			REV__nc|ENSG00000076321|Q9Y2M5-2|KLHL20	REV__nc|ENSG00000076321|Q9Y2M5-2|KLHL20	MULTI-SECPEP	A375_MHC_IP_R2	2	538.181884765625	2	537.831517	1073.64848	-0.92516	-0.00049758	0.74625	0.00040136	-0.17891	-9.6225E-05	537.8318857883334	74.635	0.50835	75.373	75.163	75.671	0.73752					14	9	2	0	0	0	0.85226	1	28435	28435		14.838	0	1	1111600	+		53738	16672	39086	39399	52462	52462					0.11460363550895636
TGVLIAMYV	9	Unmodified	_TGVLIAMYV_					0	0	0			REV__nc|ENSG00000077232|Q8IXB1-2|DNAJC10	REV__nc|ENSG00000077232|Q8IXB1-2|DNAJC10	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6683654785156	2	483.770071	965.52559	-0.76123	-0.00036826	0.98652	0.00047725	0.22529	0.00010899	483.7705465747045	40.74	0.30612	41.515	41.335	41.641	0.77451					7	5	2	0	0	0	0.74651	1	15143	15143		2.0598	2.0598	1	1767400	+		53739	16690	39087	39400	52463	52463					0.041447838279623284
TGVLKKFLL	9	Unmodified	_TGVLKKFLL_					0	0	0			REV__nc|ENSG00000173083|Q9Y251-3|HPSE	REV__nc|ENSG00000173083|Q9Y251-3|HPSE	MULTI-MSMS	A375_MHC_IP_R2	2	510.97625732421875	2	509.836603	1017.65865	-0.67866	-0.00034601	0.1793	9.1411E-05	-0.49937	-0.0002546	509.8365589162328	88.08	1.4191	88.811	88.367	89.786	0.7318					53	27	3	0	0	0	0.64808	1	33343	33343		11.64	3.7301	1	11802000	+		53740	21192	39088	39401	52464	52464					0.15052971276122662
TGVNQTEGNS	10	Unmodified	_TGVNQTEGNS_					0	0	0			REV__tr|U7T080|U7T080_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00763PE=4SV=1	REV__tr|U7T080|U7T080_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00763PE=4SV=1	MSMS	A375_MHC_IP_R2	2	503.6477966308594	2	503.725435	1005.43632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.256	1	73.991	73.491	74.491	0.73541								0	0	0	0.15038	1	27806	27806		17.113	0.1706	1		+		53741	28670	39089	39402	52465	52465					-0.06618379597853163
TGVTIIHEYF	10	Unmodified	_TGVTIIHEYF_					0	0	0			REV__ENSG00000198876|ENST00000361264|DCAF12	REV__ENSG00000198876|ENST00000361264|DCAF12	MULTI-SECPEP	A375_MHC_IP_R2	2	590.7048950195312	2	590.305864	1178.59717	-0.80526	-0.00047535	-0.53479	-0.00031569	-1.34	-0.00079104	590.3055921285136	37.711	0.5631	38.485	38.124	38.687	0.77451					17	10	2	0	0	0	0.92832	1	13899	13899		13.906	13.906	1	2585400	+		53742	22437	39090	39403	52466	52466					0.015019947861674154
TGVTRLAMWSP	11	Unmodified	_TGVTRLAMWSP_					0	0	0			REV__ENST00000557420.1_1_15:93588805-93616230:-|nuORF	REV__ENST00000557420.1_1_15:93588805-93616230:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	406.6436462402344	3	406.881502	1217.62268	0.051929	2.1129E-05	-1.6168	-0.00065783	-1.5648	-0.0006367	407.2155836569452	69.982	0.25274	69.982	69.882	70.135	0					6	4	2	0	0	0	0.73238	1	25448	25448		3.3557	0	1	467740	+		53743	26123	39091	39404	52467	52467					0.022571460369590568
TGVVTAIY	8	Unmodified	_TGVVTAIY_					0	0	0		tr|U7SWW5|U7SWW5_FUSNUcysteine-S-conjugatebeta-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01196PE=3SV=1	tr|U7SWW5|U7SWW5_FUSNUcysteine-S-conjugatebeta-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01196PE=3SV=1	tr|U7SWW5|U7SWW5_FUSNUcysteine-S-conjugatebeta-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01196PE=3SV=1	MSMS	A375_MHC_IP_R1	1	412.2709655761719	2	412.231636	822.448719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.406	1	20.406	19.906	20.906	0								0	0	0	0.16876	1	5237	5237		18.135	4.6271	1				53744	29820	39092	39405	52468	52468					0.03039308603149493
TGWSVSEKI	9	Unmodified	_TGWSVSEKI_					0	0	0			REV__ENSG00000148408|ENST00000371372|CACNA1B	REV__ENSG00000148408|ENST00000371372|CACNA1B	MULTI-MSMS	A375_MHC_IP_R1	1	504.19921875	2	503.763832	1005.51311	-0.37161	-0.0001872	-0.38886	-0.00019589	-0.76047	-0.0003831	503.76364252917546	77.562	0.40419	77.562	77.235	77.639	0					12	7	2	0	0	0	0.4867	1	28218	28218		20.454	1.1966	1	1203900	+		53745	19630	39093	39406	52469	52469					0.010574636892783928
TGWYIKLERE	10	Unmodified	_TGWYIKLERE_					0	0	0			REV__ENST00000481895.5_1_1:33256818-33282875:-|nuORF	REV__ENST00000481895.5_1_1:33256818-33282875:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	432.1419982910156	3	432.231189	1293.67174	-0.57569	-0.00024883	-0.99969	-0.0004321	-1.5754	-0.00068093	432.2308584049754	24.515	0.25446	25.159	25.06	25.314	0.64368					5	4	2	0	0	0	0.89761	1	8113	8113		10.899	2.1472	1	2667500	+		53746	25269	39094	39407	52470	52470					0.036647575975621294
TGYAINPARDL	11	Unmodified	_TGYAINPARDL_					0	0	0		tr|U7T5A8|U7T5A8_FUSNUGlyceroluptakefacilitatorproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00505PE=3SV=1	tr|U7T5A8|U7T5A8_FUSNUGlyceroluptakefacilitatorproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00505PE=3SV=1	tr|U7T5A8|U7T5A8_FUSNUGlyceroluptakefacilitatorproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00505PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	596.1732788085938	2	595.811845	1189.60914	-0.45635	-0.0002719	0.19011	0.00011327	-0.26624	-0.00015863	596.3132648891016	68.597	0.50478	69.332	69.121	69.626	0.73511					13	9	2	0	0	0	0.92455	1	25982	25982		21.537	6.6987	1	2101600			53747	30016	39095	39408	52471	52471					0.021916115293834082
TGYFCWNV	8	Unmodified	_TGYFCWNV_					0	0	0			REV__ENST00000275227.8_2_6:133092229-133093282:-|nuORF	REV__ENST00000275227.8_2_6:133092229-133093282:-|nuORF	MSMS	A375_MHC_IP_R2	2	495.1956787109375	2	495.212921	988.411288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.368	1	77.109	76.609	77.609	0.74052								0	0	0	0.16876	1	28994	28994		14.582	2.0501	1		+		53748	23297	39096	39409	52472	52472					-0.08338105934126361
TGYGMPRQI	9	Unmodified	_TGYGMPRQI_					0	0	0		ENSG00000144834|ENST00000478951|TAGLN3;ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159888592-159888742:-|nuORF	ENSG00000144834|ENST00000478951|TAGLN3;ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-SECPEP	A375_MHC_IP_R1	1	512.1580200195312	2	511.758027	1021.5015	-0.2119	-0.00010844	0.085569	4.3791E-05	-0.12633	-6.4649E-05	511.75824963359827	45.533	0.65587	45.533	45.183	45.839	0					30	12	3	0	0	0	0.24324	1	15974	15974		53.833	33.379	1	5485100			53749	6324;5520	39097	39410	52473	52473					-0.008390566056846183
TGYGMPRQI	9	Unmodified	_TGYGMPRQI_					0	0	0		ENSG00000144834|ENST00000478951|TAGLN3;ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159888592-159888742:-|nuORF	ENSG00000144834|ENST00000478951|TAGLN3;ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1574096679688	2	511.758027	1021.5015	-0.88214	-0.00045144	0.04904	2.5096E-05	-0.8331	-0.00042634	511.7582590423713	44.785	0.56174	45.554	45.239	45.8	0.76909					29	10	4	0	0	0	0.070665	1	16695	16695		69.105	40.932	1	6121200			53750	6324;5520	39097	39410	52474	52474					-0.008390566056846183
TGYIESPNY	9	Unmodified	_TGYIESPNY_					0	0	0		SCUBE3|p.L894Gfs*33|1|0.46|ENSG00000146197|chr6:35246018-35246019|-/GGAAG|frameshift_variant;nc|ENSG00000175356|Q9NQ36-2|SCUBE2;ENSG00000159307|ENST00000360835|SCUBE1;ENSG00000146197|ENST00000274938|SCUBE3;nc|ENSG00000175356|Q9NQ36|SCUBE2;nc|ENSG00000146197|Q8IX30-2|SCUBE3;ENSG00000175356|ENST00000649792|SCUBE2	SCUBE3|p.L894Gfs*33|1|0.46|ENSG00000146197|chr6:35246018-35246019|-/GGAAG|frameshift_variant	SCUBE3|p.L894Gfs*33|1|0.46|ENSG00000146197|chr6:35246018-35246019|-/GGAAG|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	522.6366577148438	2	522.237647	1042.46074	-0.5293	-0.00027642	-0.21626	-0.00011294	-0.74557	-0.00038936	522.237372004604	94.047	0.60561	94.047	93.635	94.241	0					18	11	2	0	0	0	0.74412	1	34605	34605		10.074	2.1638	1	1124900			53751	5608	39098	39411	52475	52475					-0.05879119444330172
TGYPAGFSF	9	Unmodified	_TGYPAGFSF_					0	0	0			REV__ENSG00000173557|ENST00000329615|FAM166C	REV__ENSG00000173557|ENST00000329615|FAM166C	MSMS	A375_MHC_IP_R1	1	473.6373291015625	2	473.718893	945.423233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.87	1	28.87	28.37	29.37	0								0	0	0	0.15069	1	8960	8960		20.454	4.6064	1		+		53752	21231	39099	39412	52476	52476					-0.0516616591927459
TGYPAGFSF	9	Unmodified	_TGYPAGFSF_					0	0	0			REV__ENSG00000173557|ENST00000329615|FAM166C	REV__ENSG00000173557|ENST00000329615|FAM166C	MSMS	A375_MHC_IP_R2	2	473.6369934082031	2	473.718893	945.423233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.217	1	28.895	28.395	29.395	0.67857								0	0	0	0.15142	1	9722	9722		19.257	3.4098	1		+		53753	21231	39099	39412	52477	52477					-0.0516616591927459
THALLEKAQ	9	Unmodified	_THALLEKAQ_					0	0	0		ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	MULTI-SECPEP	A375_MHC_IP_R1	1	506.19744873046875	2	505.785099	1009.55564	-0.29356	-0.00014848	-0.072601	-3.672E-05	-0.36616	-0.0001852	505.78498977814996	28.516	0.40556	28.516	28.39	28.795	0					14	7	2	0	0	0	0.75842	1	8879	8879		13.042	9.446	1	3518500			53754	7989	39100	39413	52478	52478					0.05124858817521272
THCCSPCC	8	Unmodified	_THCCSPCC_					0	0	0		nc|ENSG00000198083|Q9BYP9|KRTAP9-9;ENSG00000241595|ENST00000334109|KRTAP9-4;ENSG00000204873|ENST00000411528|KRTAP9-3;ENSG00000187272|ENST00000254072|KRTAP9-8;ENSG00000198083|ENST00000394008|KRTAP9-9;ENSG00000180386|ENST00000391354|KRTAP9-7;nc|ENSG00000198083|Q9BYP9-2|KRTAP9-9;ENSG00000239886|ENST00000377721|KRTAP9-2;ENSG00000240542|ENST00000398470|KRTAP9-1	nc|ENSG00000198083|Q9BYP9|KRTAP9-9	nc|ENSG00000198083|Q9BYP9|KRTAP9-9	MSMS	A375_MHC_IP_R1	1	427.09857177734375	2	427.126619	852.238685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.99	1	140.99	140.49	141.49	0								0	0	0	0.16876	1	54132	54132		0.69038	0	1				53755	8294	39101	39414	52479	52479					-0.19334459929018522
THEAPKLSPKV	11	Unmodified	_THEAPKLSPKV_					0	0	0		ENSG00000130701|ENST00000252998|RBBP8NL	ENSG00000130701|ENST00000252998|RBBP8NL	ENSG00000130701|ENST00000252998|RBBP8NL	MULTI-MSMS	A375_MHC_IP_R1	1	402.9341125488281	3	402.89955	1205.67682	-0.14994	-6.0412E-05	1.832	0.00073809	1.682	0.00067768	402.90059782919025	22.899	0.20132	22.899	22.773	22.974	0					5	3	2	0	0	0	0.73111	1	6209	6209		7.846	0.74432	1	544910			53756	4263	39102	39415	52480	52480					0.08221061460153578
THGEVERRI	9	Unmodified	_THGEVERRI_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MSMS	A375_MHC_IP_R1	1	366.25872802734375	3	366.200111	1095.5785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.582	1	20.582	20.082	21.082	0								0	0	0	0.15486	1	5305	5305		8.9762	1.4992	1				53757	6934	39103	39416	52481	52481					0.034538779349986726
THHRGWRPA	9	Unmodified	_THHRGWRPA_					0	0	0		ENST00000390548.6_1_14:106202899-106203544:-|nuORF	ENST00000390548.6_1_14:106202899-106203544:-|nuORF	ENST00000390548.6_1_14:106202899-106203544:-|nuORF	MSMS	A375_MHC_IP_R2	2	373.22052001953125	3	373.196924	1116.56894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.554	1	19.157	18.657	19.657	0.60308								0	0	0	0.15486	1	5525	5525		0	0	1				53758	11406	39104	39417	52482	52482					0.01532154440155864
THHSLNLPSP	10	Unmodified	_THHSLNLPSP_					0	0	0			REV__ENSG00000224470|ENST00000427980|ATXN1L	REV__ENSG00000224470|ENST00000427980|ATXN1L	MULTI-SECPEP	A375_MHC_IP_R1	1	551.1859130859375	2	551.78563	1101.55671	-0.19602	-0.00010816	0.72379	0.00039938	0.52777	0.00029122	551.7859246762279	44.497	0.30786	44.497	44.318	44.626	0					6	5	2	0	0	0	0.91442	1	15471	15471		11.495	1.4208	1	1400200	+		53759	22710	39105	39418	52483	52483					0.00999073186426358
THIFQHQLL	9	Unmodified	_THIFQHQLL_					0	0	0			REV__nc|ENSG00000197162|A8K8V0-2|ZNF785	REV__nc|ENSG00000197162|A8K8V0-2|ZNF785	MULTI-SECPEP	A375_MHC_IP_R1	1	378.9369812011719	3	379.545219	1135.61383	0.4292	0.0001629	0.91908	0.00034883	1.3483	0.00051173	379.5455358264109	28.617	0.45544	28.617	28.39	28.845	0					13	8	2	0	0	0	0.58271	1	8788	8788		10.151	0	1	7520800	+		53760	22265	39106	39419	52484	52484					0.051445404628111646
THIREHIQLY	10	Unmodified	_THIREHIQLY_					0	0	0			REV__nc|ENSG00000197044|Q8N8Z8-2|ZNF441	REV__nc|ENSG00000197044|Q8N8Z8-2|ZNF441	MSMS	A375_MHC_IP_R1	1	655.4234008789062	2	655.354211	1308.69387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.4	1	105.4	104.9	105.9	0								0	0	0	0.15435	1	38695	38695		6.7232	0	1		+		53761	22248	39107	39420	52485	52485					0.051869820659931065
THIRQHETLY	10	Unmodified	_THIRQHETLY_					0	0	0			REV__nc|ENSG00000171817|Q8NDQ6-4|ZNF540	REV__nc|ENSG00000171817|Q8NDQ6-4|ZNF540	MULTI-MSMS	A375_MHC_IP_R1	1	433.62591552734375	3	433.226438	1296.65748	-0.28666	-0.00012419	-0.87239	-0.00037794	-1.1591	-0.00050213	433.22596422908373	31.135	0.65693	31.135	30.908	31.565	0					22	12	3	0	0	0	0.70174	1	9946	9946		11.518	11.518	1	6401200	+		53762	26422	39108	39421	52486	52486					0.021021051692969195
THIRQHETLY	10	Unmodified	_THIRQHETLY_					0	0	0			REV__nc|ENSG00000171817|Q8NDQ6-4|ZNF540	REV__nc|ENSG00000171817|Q8NDQ6-4|ZNF540	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	433.226438	1296.65748	-0.26169	-0.00011337	-1.3955	-0.00060455	-1.6571	-0.00071792	433.22572799098407	30.42	0.55443	31.139	30.962	31.517	0.71857	0.0018752	-0.00033852	NaN	11.518	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6409900	+		53763	26422	39108	39421							0.021021051692969195
THLAQLNDPD	10	Unmodified	_THLAQLNDPD_					0	0	0			REV__ENST00000527129.1_1_11:76831698-76834913:+|nuORF	REV__ENST00000527129.1_1_11:76831698-76834913:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	375.5841064453125	3	375.184127	1122.53055	0.58771	0.0002205	0.2027	7.6049E-05	0.79041	0.00029655	375.1839694004805	21.472	0.40606	21.472	21.25	21.656	0					17	7	3	0	0	0	0.91442	1	5680	5680		2.4348	0.35082	1	2471500	+		53764	19671	39109	39422	52487	52487					-0.025812407757030087
THLDLTPSPDV	11	Unmodified	_THLDLTPSPDV_					0	0	0		ENSG00000100600|ENST00000334869|LGMN;ENST00000557725.5_1_14:93172722-93179177:-|nuORF;nc|ENSG00000100600|Q99538-3|LGMN;nc|ENSG00000100600|Q99538-2|LGMN	ENSG00000100600|ENST00000334869|LGMN	ENSG00000100600|ENST00000334869|LGMN	MULTI-MSMS	A375_MHC_IP_R1	1	399.2715148925781	3	398.871549	1193.59282	-0.29465	-0.00011753	0.067061	2.6749E-05	-0.22759	-9.0778E-05	398.8715653576306	24.627	0.55562	24.627	24.397	24.953	0					17	9	2	0	0	0	0.38771	1	7040	7040		25.997	0	1	17054000			53765	2199	39110	39423	52488	52488					0.003764855726103633
THLPAASF	8	Unmodified	_THLPAASF_					0	0	0		nc|ENSG00000112763|Q7KYR7-1|BTN2A1	nc|ENSG00000112763|Q7KYR7-1|BTN2A1	nc|ENSG00000112763|Q7KYR7-1|BTN2A1	MULTI-MSMS	A375_MHC_IP_R1	1	422.6215515136719	2	422.221603	842.428653	0.15187	6.4123E-05	-0.24196	-0.00010216	-0.090089	-3.8037E-05	422.22145421651766	49.922	0.97044	49.922	49.54	50.51	0					41	18	3	0	0	0	0.7338	1	17613	17613		24.674	5.2349	1	19706000			53766	14551	39111	39424	52489	52489					0.001135576631895674
THLPAASF	8	Unmodified	_THLPAASF_					0	0	0		nc|ENSG00000112763|Q7KYR7-1|BTN2A1	nc|ENSG00000112763|Q7KYR7-1|BTN2A1	nc|ENSG00000112763|Q7KYR7-1|BTN2A1	MULTI-MSMS	A375_MHC_IP_R2	2	422.6214294433594	2	422.221603	842.428653	-0.30684	-0.00012955	0.15988	6.7504E-05	-0.14696	-6.205E-05	422.22161782962723	49.062	1.0663	49.82	49.485	50.551	0.75737					47	20	4	0	0	0	0.71451	1	18375	18375		30.225	10.786	1	18725000			53767	14551	39111	39424	52490	52490					0.001135576631895674
THLQLDVLAEE	11	Unmodified	_THLQLDVLAEE_					0	0	0			REV__ENSG00000154920|ENST00000338165|EME1	REV__ENSG00000154920|ENST00000338165|EME1	MULTI-MSMS	A375_MHC_IP_R2	2	423.6222839355469	3	423.22247	1266.64558	-0.59567	-0.0002521	0.41489	0.00017559	-0.18079	-7.6513E-05	423.22246238618857	25.816	0.45899	26.476	26.194	26.653	0.65992					22	8	3	0	0	0	0.72934	1	8657	8657		9.5301	0.28633	1	3697900	+		53768	19906	39112	39425	52491	52491					0.022924436354287536
THLVLLIKLL	10	Unmodified	_THLVLLIKLL_					0	0	0			REV__ENST00000342756.9_1_4:57357643-57361536:+|nuORF	REV__ENST00000342756.9_1_4:57357643-57361536:+|nuORF	MSMS	A375_MHC_IP_R2	2	388.2864074707031	3	388.268915	1161.78492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.828	1	64.569	64.069	65.069	0.74022								0	0	0	0.15642	1	24205	24205		0	0	1		+		53769	23741	39113	39426	52492	52492					0.2104947778143469
THPYISSL	8	Unmodified	_THPYISSL_					0	0	0			REV__ENST00000533954.5_1_11:58703032-58703116:-|nuORF	REV__ENST00000533954.5_1_11:58703032-58703116:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	459.6400451660156	2	459.239993	916.465432	-0.52888	-0.00024288	1.7432	0.00080055	1.2143	0.00055766	459.2402127729392	66.354	0.51027	67.091	66.831	67.342	0.73631					21	9	3	0	0	0	0.54285	1	25146	25146		38.151	0	1	1336600	+		53770	25885	39114	39427	52493	52493					0.0038580948910293955
THRLQKAYK	9	Unmodified	_THRLQKAYK_					0	0	0		ZDBF2|p.H1684Y|1|0.12|ENSG00000204186|chr2:206309578-206309578|C/T|missense_variant	ZDBF2|p.H1684Y|1|0.12|ENSG00000204186|chr2:206309578-206309578|C/T|missense_variant	ZDBF2|p.H1684Y|1|0.12|ENSG00000204186|chr2:206309578-206309578|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	382.6243896484375	3	382.224368	1143.65128	0.2107	8.0535E-05	0.64048	0.00024481	0.85119	0.00032534	382.2245601441056	24.572	0.55597	24.572	24.296	24.852	0					14	10	2	0	0	0	0.74169	1	7022	7022		7.609	7.609	1	6728700			53771	30193	39115	39428	52494	52494					0.0851963172840442
THRRRRLVRKR	11	Unmodified	_THRRRRLVRKR_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF;MYOF|p.A1785Pfs*8|1|0.41|ENSG00000138119|chr10:93323281-93323281|C/-|frameshift_variant	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MSMS	A375_MHC_IP_R2	2	511.98834228515625	3	511.997697	1532.97126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.536	1	43.308	42.808	43.808	0.7724								0	0	0	0.16358	1	15825	15825		0.08335	0.010087	1				53772	4961	39116	39429	52495	52495					0.2260953251313822
THSGGGGG	8	Unmodified	_THSGGGGG_					0	0	0		ENSG00000164548|ENST00000297071|TRA2A;nc|ENSG00000164548|Q13595-4|TRA2A;nc|ENSG00000164548|Q13595-3|TRA2A;nc|ENSG00000164651|Q8IXZ3-2|SP8;nc|ENSG00000164651|Q8IXZ3-1|SP8;nc|ENSG00000164651|Q8IXZ3|SP8;ENSG00000164651|ENST00000418710|SP8	ENSG00000164548|ENST00000297071|TRA2A	ENSG00000164548|ENST00000297071|TRA2A	MULTI-SECPEP	A375_MHC_IP_R1	1	628.7714233398438	1	629.263779	628.256502	-0.92077	-0.00057941	1.0066	0.00063345	0.085879	5.404E-05	629.2683883827348	136.78	1.1319	136.78	136.36	137.49	0					34	21	2	0	0	0	0.972	1	52830	52830		0	0	1	1357900			53773	6850	39117	39430	52496	52496					-0.07249594024312955
THSIPLQTM	9	Unmodified	_THSIPLQTM_					0	0	0			REV__ENST00000607240.1_1_1:75626439-75626577:+|nuORF	REV__ENST00000607240.1_1_1:75626439-75626577:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	514.0948486328125	2	514.265684	1026.51682	-1.0726	-0.0005516	1.8636	0.00095838	0.79098	0.00040678	514.7663864951729	33.35	0.25441	34.103	33.942	34.196	0.75225					6	4	2	0	0	0	0.67483	1	11964	11964		14.838	0	1	1074500	+		53774	20279	39118	39431	52497	52497					0.004618101914957151
THSKQSETF	9	Unmodified	_THSKQSETF_					0	0	0			REV__nc|ENSG00000198300|Q9GZU2-2|PEG3	REV__nc|ENSG00000198300|Q9GZU2-2|PEG3	MSMS	A375_MHC_IP_R1	1	532.6979370117188	2	532.753995	1063.49344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.136	1	29.136	28.636	29.636	0								0	0	0	0.15486	1	9076	9076		12.532	1.7076	1		+		53775	22361	39119	39432	52498	52498					-0.03576912321477721
THTDRRWRRWR	11	Unmodified	_THTDRRWRRWR_					0	0	0			REV__ENST00000432064.1_1_2:48132867-48134625:+|nuORF	REV__ENST00000432064.1_1_2:48132867-48134625:+|nuORF	MSMS	A375_MHC_IP_R2	2	542.5375366210938	3	542.625929	1624.85596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.552	1	53.304	52.804	53.804	0.75225								0	0	0	0.16352	1	19811	19811		0.40827	0	1		+		53776	24708	39120	39433	52499	52499					0.06852383591490252
THVRRHRILN	10	Unmodified	_THVRRHRILN_					0	0	0			REV__nc|ENSG00000204519|Q7Z340-2|ZNF551	REV__nc|ENSG00000204519|Q7Z340-2|ZNF551	MULTI-MSMS	A375_MHC_IP_R1	1	651.787109375	2	651.386711	1300.75887	-0.72669	-0.00047336	1.4597	0.00095082	0.733	0.00047747	651.3877934390102	145.07	0.66046	145.07	144.72	145.38	0					38	22	2	0	0	0	0.72658	1	55593	55593		0.40072	0	1	632030	+		53777	22522	39121	39434	52500	52500					0.12052021382532985
THVRRHRILN	10	Unmodified	_THVRRHRILN_					0	0	0			REV__nc|ENSG00000204519|Q7Z340-2|ZNF551	REV__nc|ENSG00000204519|Q7Z340-2|ZNF551	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	651.386711	1300.75887	-0.72669	-0.00047336	1.4597	0.00095082	0.733	0.00047747	651.3877934390102	145.07	0.66046	145.07	144.72	145.38	0	-0.05244	0.00031028	NaN	0.40072	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	632030	+		53778	22522	39121	39434							0.12052021382532985
THVRRHRILN	10	Unmodified	_THVRRHRILN_					0	0	0			REV__nc|ENSG00000204519|Q7Z340-2|ZNF551	REV__nc|ENSG00000204519|Q7Z340-2|ZNF551	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	651.386711	1300.75887	-0.56681	-0.00036921	1.1376	0.00074103	0.57081	0.00037182	651.3874683347572	145.15	0.60522	145.17	144.8	145.41	0.021408	0.05244	-0.00010931	NaN	0.40072	42	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	600410	+		53779	22522	39121	39434							0.12052021382532985
THVVLILRG	9	Unmodified	_THVVLILRG_					0	0	0		NOS1|p.P100L|1|0.35|ENSG00000089250|chr12:117330771-117330771|G/A|missense_variant;nc|ENSG00000089250|P29475-4|NOS1;nc|ENSG00000089250|P29475-2|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1	NOS1|p.P100L|1|0.35|ENSG00000089250|chr12:117330771-117330771|G/A|missense_variant	NOS1|p.P100L|1|0.35|ENSG00000089250|chr12:117330771-117330771|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	504.7212219238281	2	504.321651	1006.62875	-0.48844	-0.00024633	0.455	0.00022947	-0.033444	-1.6866E-05	504.32198266976894	149.85	2.0309	149.87	147.98	150.01	0.01825					159	72	3	0	0	0	0.77827	1	58159	58159		0	0	1	483280			53780	1924	39122	39435	52501	52501					0.12570032330825143
TIAAKPVL	8	Unmodified	_TIAAKPVL_					0	0	0			REV__nc|ENSG00000117475|Q9H2G9-2|BLZF1	REV__nc|ENSG00000117475|Q9H2G9-2|BLZF1	MULTI-MSMS	A375_MHC_IP_R1	1	407.3085021972656	2	406.765646	811.516739	-0.22454	-9.1336E-05	0.46701	0.00018996	0.24247	9.8629E-05	406.7657721216063	68.781	0.35381	68.781	68.616	68.969	0					10	6	2	0	0	0	0.77028	1	24978	24978		14.838	2.3067	1	561180	+		53781	18008	39123	39436	52502	52502					0.10344178253808423
TIAATQSTNK	10	Unmodified	_TIAATQSTNK_					0	0	0			REV__ENST00000557382.1_1_14:91925105-91927973:-|nuORF	REV__ENST00000557382.1_1_14:91925105-91927973:-|nuORF	MSMS	A375_MHC_IP_R2	2	517.5588989257812	2	517.77747	1033.54039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.565	1	80.31	79.81	80.81	0.74474								0	0	0	0.15136	1	30195	30195		15.248	1.7406	1		+		53782	17120	39124	39437	52503	52503					0.024959472296586682
TIADLNVMRI	10	Unmodified	_TIADLNVMRI_					0	0	0		ENST00000442006.2_1_1:39174637-39175513:+|nuORF	ENST00000442006.2_1_1:39174637-39175513:+|nuORF	ENST00000442006.2_1_1:39174637-39175513:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	381.9485168457031	3	382.549753	1144.62743	-0.37791	-0.00014457	1.0328	0.00039509	0.65487	0.00025052	382.5501097595905	33.293	0.50927	34.045	33.789	34.298	0.75225					14	9	2	0	0	0	0.92227	1	11846	11846		5.0475	2.6127	1	3058100			53783	11988	39125	39438	52504	52504					0.0609003017973464
TIADRLLEY	9	Unmodified	_TIADRLLEY_					0	0	0		tr|U7SVW1|U7SVW1_FUSNUElongationfactor4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=lepAPE=3SV=1	tr|U7SVW1|U7SVW1_FUSNUElongationfactor4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=lepAPE=3SV=1	tr|U7SVW1|U7SVW1_FUSNUElongationfactor4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=lepAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	547.223876953125	2	547.298039	1092.58152	-1.0635	-0.00058203	0.30568	0.0001673	-0.75777	-0.00041473	547.298101830616	49.628	1.0664	50.384	50.095	51.161	0.75654					61	20	4	0	0	0	0.34064	1	18897	18897		27.629	3.6082	1	16066000			53784	29800	39126	39439	52505	52505					0.0389370826915183
TIADYAVHESG	11	Unmodified	_TIADYAVHESG_					0	0	0			REV__GRM3|p.G319D|1|0.36|ENSG00000198822|chr7:86786748-86786748|G/A|missense_variant	REV__GRM3|p.G319D|1|0.36|ENSG00000198822|chr7:86786748-86786748|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	581.7640991210938	2	581.772385	1161.53022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.558	1	89.289	88.789	89.789	0.7318								0	0	0	0.16108	1	33702	33702		13.042	3.6593	1		+		53785	26716	39127	39440	52506	52506					-0.0440866049559645
TIAERLLSV	9	Unmodified	_TIAERLLSV_					0	0	0			REV__ENSG00000160883|ENST00000292432|HK3	REV__ENSG00000160883|ENST00000292432|HK3	MSMS	A375_MHC_IP_R1	1	501.2106018066406	2	501.303124	1000.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.498	1	40.498	39.998	40.998	0								0	0	0	0.14169	1	13920	13920		29.082	5.061	1		+		53786	20190	39128	39441	52507	52507					0.09142315994381534
TIAEVGKWLQA	11	Unmodified	_TIAEVGKWLQA_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL;AGL|p.D1232Vfs*10|1|0.09|ENSG00000162688|chr1:99902788-99902789|-/TGAAAATATAT|frameshift_variant	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-SECPEP	A375_MHC_IP_R1	1	608.740478515625	2	608.340238	1214.66592	-0.39699	-0.00024151	0.57853	0.00035194	0.18154	0.00011044	608.340621238522	89.899	0.75883	89.899	89.526	90.285	0					17	14	2	0	0	0	0.46316	1	33128	33128		43.982	14.141	1	1040900			53787	6577	39129	39442	52508	52508					0.06717659085916239
TIAFPTLELW	10	Unmodified	_TIAFPTLELW_					0	0	0		ZFHX4|p.V2500I|1|0.37|ENSG00000091656|chr8:76854419-76854419|G/A|missense_variant	ZFHX4|p.V2500I|1|0.37|ENSG00000091656|chr8:76854419-76854419|G/A|missense_variant	ZFHX4|p.V2500I|1|0.37|ENSG00000091656|chr8:76854419-76854419|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	596.225830078125	2	595.826432	1189.63831	-0.012691	-7.5615E-06	-0.35531	-0.0002117	-0.368	-0.00021927	595.8260789944017	115.59	0.71436	115.59	115.22	115.94	0					21	13	2	0	0	0	0.88918	1	42391	42391		13.042	0	1	3018500			53788	30198	39130	39443	52509	52509					0.05107755825656568
TIALKFKKGQ	10	Unmodified	_TIALKFKKGQ_					0	0	0			REV__tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	REV__tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	567.6845703125	2	567.355691	1132.69683	-0.36255	-0.00020569	-0.26364	-0.00014958	-0.62618	-0.00035527	567.3556132158941	76.144	0.55703	76.884	76.589	77.146	0.74052					17	10	3	0	0	0	0.91556	1	28973	28973		3.2813	0	1	1908700	+		53789	28291	39131	39444	52510	52510					0.13578857190805138
TIARLRLKKIF	11	Unmodified	_TIARLRLKKIF_					0	0	0		ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1;nc|ENSG00000146223|Q6DKI1-2|RPL7L1;ENST00000462348.1_1_6:42848614-42854030:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	679.2015380859375	2	679.953364	1357.89217	-0.44176	-0.00030037	-0.58404	-0.00039712	-1.0258	-0.00069749	680.4538657888452	106.57	0.25446	106.57	106.42	106.68	0					5	4	2	0	0	0	0.99606	1	39148	39148		3.2813	0	1	908520			53790	5610	39132	39445	52511	52511					0.22754447715624337
TIASLEELI	9	Unmodified	_TIASLEELI_					0	0	0			REV__ENSG00000176108|ENST00000325167|CHMP6	REV__ENSG00000176108|ENST00000325167|CHMP6	MULTI-MSMS	A375_MHC_IP_R1	1	988.240478515625	1	988.556104	987.548827	0.059033	5.8357E-05	2.2131	0.0021878	2.2722	0.0022462	988.5582242875065	125.1	0.25048	125.1	125	125.25	0					5	4	2	0	0	0	0.012712	1	47365	47365		92.822	0	1	18156000	+		53791	21386	39133	39446	52512	52512					0.0545550114627531
TICQLLIDR	9	Unmodified	_TICQLLIDR_					0	0	0		ENSG00000137831|ENST00000322954|UACA;nc|ENSG00000137831|Q9BZF9-2|UACA;ENST00000560523.5_1_15:70964229-70991966:-|nuORF	ENSG00000137831|ENST00000322954|UACA	ENSG00000137831|ENST00000322954|UACA	MULTI-SECPEP	A375_MHC_IP_R1	1	359.2707214355469	3	358.870715	1073.59032	0.077684	2.7879E-05	-0.11863	-4.2573E-05	-0.040946	-1.4694E-05	358.8707512266298	31.679	1.3712	31.679	31.363	32.734	0					48	26	3	0	0	0	0.65527	1	10158	10158		8.4443	3.0416	1	2733500			53792	4925	39134	39447	52513	52513					0.056463586339759786
TICVLCFDY	9	Unmodified	_TICVLCFDY_					0	0	0			REV__ENST00000394974.2_1_1:58694357-58694534:-|nuORF	REV__ENST00000394974.2_1_1:58694357-58694534:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	538.2142333984375	2	538.743196	1075.47184	-1.3956	-0.00075188	1.5178	0.0008177	0.12219	6.5827E-05	538.7437151918616	53.592	0.51089	54.343	53.995	54.505	0.75105					13	9	2	0	0	0	0.76187	1	20125	20125		7.2892	0	1	1321800	+		53793	24314	39135	39448	52514	52514					-0.06287756666051791
TIDAEFDRYY	10	Unmodified	_TIDAEFDRYY_					0	0	0			REV__ENST00000507405.5_1_5:138755893-138773164:-|nuORF	REV__ENST00000507405.5_1_5:138755893-138773164:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	432.3184814453125	3	431.531304	1291.57208	-0.2803	-0.00012096	-2.4223	-0.0010453	-2.7026	-0.0011663	431.53031020093266	32.588	0.30585	33.325	33.162	33.468	0.73692					7	5	2	0	0	0	0.94587	1	11603	11603		0.69767	0	1	902350	+		53794	20995	39136	39449	52515	52515					-0.062041048070341276
TIDANPVAV	9	Unmodified	_TIDANPVAV_					0	0	0			REV__ENST00000603798.5_1_12:51639532-51639625:-|nuORF	REV__ENST00000603798.5_1_12:51639532-51639625:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	449.6792907714844	2	450.245275	898.475997	-0.18564	-8.3585E-05	-0.069072	-3.1099E-05	-0.25472	-0.00011468	450.24510606840363	68.714	0.20216	69.449	69.323	69.525	0.73511					5	3	2	0	0	0	0.48581	1	26044	26044		18.135	5.6034	1	731980	+		53795	26523	39137	39450	52516	52516					0.02269792143522409
TIDDGIFEV	9	Unmodified	_TIDDGIFEV_					0	0	0		ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000204388|ENST00000375650|HSPA1B	MULTI-SECPEP	A375_MHC_IP_R1	1	1008.988525390625	1	1008.48842	1007.48114	0.58209	0.00058703	0.35696	0.00035999	0.93904	0.00094702	1008.4884447635769	115.51	1.069	115.51	115.12	116.19	0					49	20	4	0	0	0	0.0091148	1	42410	42410		156.16	78.006	1	34500000			53796	9437;9438	39138	39451	52517	52517					-0.02229948784508906
TIDDGIFEV	9	Unmodified	_TIDDGIFEV_					0	0	0		ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000204388|ENST00000375650|HSPA1B	MULTI-MSMS	A375_MHC_IP_R2	2	1008.2592163085938	1	1008.48842	1007.48114	0.21333	0.00021514	0.038974	3.9305E-05	0.2523	0.00025444	1008.4881141628639	114.8	0.92081	115.49	115.06	115.98	0.68999					40	17	3	0	0	0	0.0090874	1	43318	43318		172.91	64.909	1	28920000			53797	9437;9438	39138	39451	52518	52518					-0.02229948784508906
TIDEHYFWYLI	11	Unmodified	_TIDEHYFWYLI_					0	0	0			REV__ENST00000489998.5_1_1:157765891-157772050:-|nuORF	REV__ENST00000489998.5_1_1:157765891-157772050:-|nuORF	MSMS	A375_MHC_IP_R1	1	500.4749755859375	3	500.578365	1498.71327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.969	1	72.969	72.469	73.469	0								0	0	0	0.16161	1	26558	26558		10.315	7.684	1		+		53798	20375	39139	39452	52519	52519					-0.016141064337489297
TIDEMPYPQF	10	Unmodified	_TIDEMPYPQF_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MSMS	A375_MHC_IP_R1	1	620.679931640625	2	620.781364	1239.54818	-0.32034	-0.00019886	4.2987	0.0026686	3.9784	0.0024697	621.2859001271495	72.635	0.40706	72.635	72.423	72.83	0					18	7	3	0	0	0	0.60556	1	26430	26430		20.454	3.3407	1	2072300	+		53799	21924	39140	39453	52520	52520					-0.06201661565091854
TIDETNRTW	9	Unmodified	_TIDETNRTW_					0	0	0			REV__ENST00000507090.2_1_4:13338641-13339112:+|nuORF	REV__ENST00000507090.2_1_4:13338641-13339112:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	569.176025390625	2	568.272552	1134.53055	-0.20261	-0.00011513	2.3552	0.0013384	2.1526	0.0012233	568.7756985206673	51.379	0.76044	51.379	51.119	51.879	0					35	14	4	0	0	0	0.63811	1	18239	18239		12.532	1.0368	1	2672400	+		53800	25562	39141	39454	52521	52521					-0.031332407757190595
TIDEYYFW	8	Unmodified	_TIDEYYFW_					0	0	0			REV__FCRL1|p.H244Y|1|0.32|ENSG00000163534|chr1:157802071-157802071|G/A|missense_variant	REV__FCRL1|p.H244Y|1|0.32|ENSG00000163534|chr1:157802071-157802071|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	568.6859130859375	2	568.75039	1135.48623	-0.33179	-0.00018871	4.291	0.0024405	3.9593	0.0022518	568.7544940347979	73.859	0.35746	74.596	74.449	74.807	0.73752					8	6	2	0	0	0	0.972	1	28034	28034		5.7604	2.4791	1	558470	+		53801	26626	39142	39455	52522	52522					-0.07609644921899417
TIDGVTYGSG	10	Unmodified	_TIDGVTYGSG_					0	0	0		ENST00000498171.5_1_22:20077477-20097628:+|nuORF;ENST00000495826.5_1_22:20074657-20094820:+|nuORF;ENSG00000128191|ENST00000351989|DGCR8	ENST00000498171.5_1_22:20077477-20097628:+|nuORF	ENST00000498171.5_1_22:20077477-20097628:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	485.1500549316406	2	485.229822	968.445091	-0.55556	-0.00026957	0.49409	0.00023975	-0.061466	-2.9825E-05	485.2300511724489	73.636	0.56116	74.371	74.041	74.602	0.73541					19	10	2	0	0	0	0.61429	1	27878	27878		37.974	7.3375	1	2180400			53802	4122	39143	39456	52523	52523					-0.04039405961361808
TIDIGVLY	8	Unmodified	_TIDIGVLY_					0	0	0			REV__tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1	REV__tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	894.5240478515625	1	893.497861	892.490584	-0.16865	-0.00015069	0.4897	0.00043754	0.32105	0.00028686	893.4984680338433	103.51	0.40678	103.51	103.27	103.68	0					10	7	2	0	0	0	0.73946	1	38036	38036		23.148	0	1	1553700	+		53803	28541	39144	39457	52524	52524					0.04003864291667014
TIDIGVLY	8	Unmodified	_TIDIGVLY_					0	0	0			REV__tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1	REV__tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	893.497861	892.490584	-0.16865	-0.00015069	0.4897	0.00043754	0.32105	0.00028686	893.4984680338433	103.51	0.40678	103.51	103.27	103.68	0	0.015667	1.1915E-05	NaN	23.148	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1553700	+		53804	28541	39144	39457							0.04003864291667014
TIDIGVLY	8	Unmodified	_TIDIGVLY_					0	0	0			REV__tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1	REV__tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		1	893.497861	892.490584	-0.45592	-0.00040736	0.46579	0.00041618	0.0098745	8.8229E-06	893.4979399476242	102.72	0.45801	103.48	103.18	103.63	0.76428	-0.015667	-9.4465E-06	NaN	23.148	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1377000	+		53805	28541	39144	39457							0.04003864291667014
TIDKFDKAV	9	Unmodified	_TIDKFDKAV_					0	0	0			REV__ENST00000483593.5_1_10:70666544-70673107:+|nuORF	REV__ENST00000483593.5_1_10:70666544-70673107:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1869506835938	2	518.787307	1035.56006	-0.75581	-0.0003921	0.65078	0.00033762	-0.10503	-5.4489E-05	518.7875497352624	66.693	0.91885	66.693	66.326	67.245	0					36	17	3	0	0	0	0.4465	1	24187	24187		31.268	0	1	4275600	+		53806	17492	39145	39458	52525	52525					0.04370323240414109
TIDLVLSSI	9	Unmodified	_TIDLVLSSI_					0	0	0		ENSG00000197428|ENST00000641817|OR51D1	ENSG00000197428|ENST00000641817|OR51D1	ENSG00000197428|ENST00000641817|OR51D1	MULTI-SECPEP	A375_MHC_IP_R1	1	481.18450927734375	2	480.784233	959.553913	-0.36021	-0.00017318	0.38847	0.00018677	0.028259	1.3586E-05	480.78439628827806	103.29	0.61205	103.29	103.01	103.63	0					16	11	2	0	0	0	0.07754	1	37968	37968		54.774	0	1	1750000			53807	9156	39146	39459	52526	52526					0.07251805008922929
TIDLVLSSI	9	Unmodified	_TIDLVLSSI_					0	0	0		ENSG00000197428|ENST00000641817|OR51D1	ENSG00000197428|ENST00000641817|OR51D1	ENSG00000197428|ENST00000641817|OR51D1	MULTI-SECPEP	A375_MHC_IP_R2	2	481.184326171875	2	480.784233	959.553913	-0.5662	-0.00027222	0.44127	0.00021216	-0.12493	-6.0062E-05	480.7843220079686	102.44	0.66129	103.2	102.97	103.63	0.76428					19	12	2	0	0	0	0.07754	1	38843	38843		54.774	0	1	1277100			53808	9156	39146	39459	52527	52527					0.07251805008922929
TIDLWEMND	9	Unmodified	_TIDLWEMND_					0	0	0			REV__nc|ENSG00000186260|Q9ULH7-4|MRTFB	REV__nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	A375_MHC_IP_R1	1	569.7109375	2	568.750064	1135.48558	-0.49433	-0.00028115	0.21123	0.00012013	-0.2831	-0.00016102	568.7503179533471	52.836	0.45583	52.836	52.541	52.997	0					14	8	3	0	0	0	0.55818	1	18829	18829		16.942	0	1	2462100	+		53809	21959	39147	39460	52528	52528					-0.07674807633270575
TIDMKIHSF	9	Unmodified	_TIDMKIHSF_					0	0	0			REV__ENSG00000188177|ENST00000409871|ZC3H6	REV__ENSG00000188177|ENST00000409871|ZC3H6	MULTI-SECPEP	A375_MHC_IP_R2	2	364.2947692871094	3	364.523315	1090.54812	-0.55698	-0.00020303	0.18289	6.6669E-05	-0.37409	-0.00013636	364.52316095000515	36.799	0.20391	37.57	37.461	37.665	0.7709					5	3	2	0	0	0	0.75466	1	13460	13460		8.1555	0	1	633690	+		53810	22076	39148	39461	52529	52529					0.006463832255803936
TIDNQVLMRY	10	Unmodified	_TIDNQVLMRY_					0	0	0			REV__nc|ENSG00000005187|Q53FZ2-2|ACSM3	REV__nc|ENSG00000005187|Q53FZ2-2|ACSM3	MSMS	A375_MHC_IP_R1	1	626.6939086914062	2	626.821355	1251.62816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.101	1	70.101	69.601	70.601	0								0	0	0	0.15332	1	25447	25447		10.074	1.3285	1		+		53811	16114	39149	39462	52530	52530					0.012408248287783863
TIDPIPHQL	9	Unmodified	_TIDPIPHQL_					0	0	0		nc|ENSG00000125885|Q9UJA3-2|MCM8;nc|ENSG00000125885|Q9UJA3-3|MCM8;ENSG00000125885|ENST00000610722|MCM8;nc|ENSG00000125885|Q9UJA3-4|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	MULTI-MSMS	A375_MHC_IP_R2	2	517.69970703125	2	517.287474	1032.5604	-0.72758	-0.00037637	-0.28503	-0.00014744	-1.0126	-0.00052381	517.2873897656715	67.504	1.2196	68.24	67.495	68.715	0.73631					72	23	4	0	0	0	0.46465	1	25380	25380		21.537	21.537	1	28541000			53812	4005	39150	39463	52531	52531					0.04541742960282136
TIDQFEYDG	9	Unmodified	_TIDQFEYDG_					0	0	0		ENSG00000213246|ENST00000225504|SUPT4H1	ENSG00000213246|ENST00000225504|SUPT4H1	ENSG00000213246|ENST00000225504|SUPT4H1	MSMS	A375_MHC_IP_R1	1	544.213134765625	2	544.232561	1086.45057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.36	1	132.36	131.86	132.86	0								0	0	0	0.15486	1	51035	51035		11.64	3.047	1				53813	9560	39151	39464	52532	52532					-0.08919727169586622
TIDQLYLEY	9	Unmodified	_TIDQLYLEY_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000556343.1_1_14:69350028-69351010:-|nuORF	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	A375_MHC_IP_R1	1	579.6898193359375	2	579.289879	1156.56521	-0.05066	-2.9347E-05	0.35628	0.00020639	0.30562	0.00017704	579.2900031150409	110.62	0.96994	110.62	110.19	111.16	0					45	18	3	0	0	0	0.0092471	1	40507	40507		103.35	38.118	1	6541300			53814	1529	39152	39465	52533	52533					-0.006814176876332567
TIDQLYLEY	9	Unmodified	_TIDQLYLEY_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000556343.1_1_14:69350028-69351010:-|nuORF	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	A375_MHC_IP_R1	1	1158.7200927734375	1	1157.57248	1156.56521	0.16909	0.00019573	0.34601	0.00040054	0.5151	0.00059627	1157.5726904141782	110.62	0.76512	110.62	110.24	111	0					34	14	3	0	0	0	0.032333	1	40551	40551		72.968	19.135	1	5726400			53815	1529	39152	39465	52534	52534					-0.006814176876332567
TIDQLYLEY	9	Unmodified	_TIDQLYLEY_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000556343.1_1_14:69350028-69351010:-|nuORF	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	A375_MHC_IP_R2	2	579.689697265625	2	579.289879	1156.56521	-0.11594	-6.7163E-05	0.041006	2.3754E-05	-0.074935	-4.3409E-05	579.2897970865904	109.89	0.91888	110.64	110.23	111.15	0.74684					45	17	4	0	0	0	0.012843	1	41418	41418		92.653	32.579	1	7961900			53816	1529	39152	39465	52535	52535					-0.006814176876332567
TIDQLYLEY	9	Unmodified	_TIDQLYLEY_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000556343.1_1_14:69350028-69351010:-|nuORF	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-SECPEP	A375_MHC_IP_R2	2	1156.9354248046875	1	1157.57248	1156.56521	0.28967	0.00033532	0.38348	0.00044391	0.67315	0.00077922	1157.5727787060544	109.84	0.71426	110.59	110.28	111	0.74683					28	13	3	0	0	0	0.0575	1	41432	41432		76.825	22.992	1	4942200			53817	1529	39152	39465	52536	52536					-0.006814176876332567
TIDQWQIV	8	Unmodified	_TIDQWQIV_					0	0	0			REV__ENST00000515159.5_1_5:54931266-54960686:-|nuORF	REV__ENST00000515159.5_1_5:54931266-54960686:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	501.1687927246094	2	501.766374	1001.5182	-0.45535	-0.00022848	4.2081	0.0021115	3.7527	0.001883	502.26868629030014	32.101	0.30925	32.101	31.921	32.231	0					7	5	2	0	0	0	0.93416	1	10280	10280		9.3474	0	1	731470	+		53818	25658	39153	39466	52537	52537					0.017497675518939104
TIDRTVLNP	9	Unmodified	_TIDRTVLNP_					0	0	0		ENST00000497139.5_1_6:43746263-43752447:+|nuORF	ENST00000497139.5_1_6:43746263-43752447:+|nuORF	ENST00000497139.5_1_6:43746263-43752447:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	515.1900634765625	2	514.790381	1027.56621	-0.28862	-0.00014858	1.8192	0.00093649	1.5306	0.00078791	514.7902029415344	42.93	0.66145	42.93	42.587	43.249	0					28	12	3	0	0	0	0.1277	1	14867	14867		46.021	0	1	4811900			53819	12739	39154	39467	52538	52538					0.05352841471949432
TIDSTGDFFF	10	Unmodified	_TIDSTGDFFF_					0	0	0			REV__ENSG00000181378|ENST00000341552|CFAP65	REV__ENSG00000181378|ENST00000341552|CFAP65	MULTI-SECPEP	A375_MHC_IP_R1	1	574.7337646484375	2	575.258579	1148.50261	-0.39431	-0.00022683	-0.49902	-0.00028706	-0.89333	-0.00051389	575.7591035155806	86.543	0.86101	86.543	86.072	86.933	0					19	16	2	0	0	0	0.9269	1	31561	31561		10.824	4.1008	1	1236900	+		53820	21646	39155	39468	52539	52539					-0.0657056375580396
TIDTFEPFDI	10	Unmodified	_TIDTFEPFDI_					0	0	0			REV__nc|ENSG00000172717|Q8N9W8-2|GARIN2	REV__nc|ENSG00000172717|Q8N9W8-2|GARIN2	MULTI-MSMS	A375_MHC_IP_R1	1	599.6873779296875	2	599.287337	1196.56012	-0.67507	-0.00040456	-0.32941	-0.00019741	-1.0045	-0.00060197	599.2875334450399	67.117	0.76736	67.117	66.836	67.603	0					26	14	3	0	0	0	0.079406	1	24329	24329		68.081	18.148	1	3528300	+		53821	21163	39156	39469	52540	52540					-0.03029721550205977
TIDTFEPFDI	10	Unmodified	_TIDTFEPFDI_					0	0	0			REV__nc|ENSG00000172717|Q8N9W8-2|GARIN2	REV__nc|ENSG00000172717|Q8N9W8-2|GARIN2	MULTI-MSMS	A375_MHC_IP_R2	2	599.6869506835938	2	599.287337	1196.56012	-0.65908	-0.00039498	-1.1448	-0.00068606	-1.8039	-0.001081	599.2874647019088	66.435	0.76566	67.171	66.831	67.597	0.73631					22	14	3	0	0	0	0.25271	1	25196	25196		43.858	13.222	1	2228700	+		53822	21163	39156	39469	52541	52541					-0.03029721550205977
TIDTFEPFDI	10	Unmodified	_TIDTFEPFDI_					0	0	0			REV__nc|ENSG00000172717|Q8N9W8-2|GARIN2	REV__nc|ENSG00000172717|Q8N9W8-2|GARIN2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	599.287337	1196.56012	-0.67507	-0.00040456	-0.32941	-0.00019741	-1.0045	-0.00060197	599.2875334450399	67.117	0.76736	67.117	66.836	67.603	0	-0.027145	0.00026809	NaN	68.081	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3528300	+		53823	21163	39156	39469							-0.03029721550205977
TIDTFEPFDI	10	Unmodified	_TIDTFEPFDI_					0	0	0			REV__nc|ENSG00000172717|Q8N9W8-2|GARIN2	REV__nc|ENSG00000172717|Q8N9W8-2|GARIN2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	599.287337	1196.56012	-0.65908	-0.00039498	-1.1448	-0.00068606	-1.8039	-0.001081	599.2874647019088	66.435	0.76566	67.171	66.831	67.597	0.73631	0.027145	-0.00070921	NaN	68.081	22	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2228700	+		53824	21163	39156	39469							-0.03029721550205977
TIDTLKQE	8	Unmodified	_TIDTLKQE_					0	0	0		nc|ENSG00000163808|Q9NS87-3|KIF15;nc|ENSG00000163808|Q9NS87-2|KIF15;ENSG00000163808|ENST00000326047|KIF15;nc|ENSG00000163808|Q9NS87-4|KIF15	nc|ENSG00000163808|Q9NS87-3|KIF15	nc|ENSG00000163808|Q9NS87-3|KIF15	MULTI-SECPEP	A375_MHC_IP_R2	2	473.6841735839844	2	474.25584	946.497126	-0.47046	-0.00022312	0.54517	0.00025855	0.074711	3.5432E-05	474.255622150127	87.711	0.2539	88.443	88.367	88.621	0.7318					7	4	2	0	0	0	0.73563	1	33430	33430		44.407	0	1	968950			53825	6725	39157	39470	52542	52542					0.021737574523854164
TIDTPSAMDW	10	Unmodified	_TIDTPSAMDW_					0	0	0			REV__nc|ENSG00000166167|Q9Y297-2|BTRC	REV__nc|ENSG00000166167|Q9Y297-2|BTRC	MULTI-MSMS	A375_MHC_IP_R1	1	569.2007446289062	2	568.750064	1135.48558	-0.49433	-0.00028115	0.21123	0.00012013	-0.2831	-0.00016102	568.7503179533471	52.836	0.45583	52.836	52.541	52.997	0					14	8	3	0	0	0	0.60556	1	18826	18826		20.454	3.5113	1	2462100	+		53826	20657	39158	39471	52543	52543					-0.07674807633270575
TIDTSMFCEY	10	Oxidation (M)	_TIDTSM(Oxidation (M))FCEY_		TIDTSM(1)FCEY		TIDTSM(44)FCEY	0	0	1		ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	A375_MHC_IP_R1	1	613.6410522460938	2	613.241215	1224.46788	-0.3266	-0.00020028	-0.016552	-1.015E-05	-0.34315	-0.00021043	613.7425413731984	87.668	1.5788	87.668	87.34	88.919	0					43	30	3	0	0	0	0.25271	1	32579	32579		43.858	33.784	1	2558300			53827	4716	39159	39472	52544	52544		250			-0.1353789095041975
TIDTSMFCEY	10	Oxidation (M)	_TIDTSM(Oxidation (M))FCEY_		TIDTSM(1)FCEY		TIDTSM(42)FCEY	0	0	1		ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	A375_MHC_IP_R2	2	613.7177124023438	2	613.241215	1224.46788	-0.48549	-0.00029772	0.31449	0.00019286	-0.171	-0.00010486	613.241501380652	88.162	1.0129	88.894	88.418	89.431	0.7318					29	19	2	0	0	0	0.27246	1	33579	33579		41.84	31.016	1	2702100			53828	4716	39159	39472	52545	52545		250			-0.1353789095041975
TIDTSMFCEY	10	Unmodified	_TIDTSMFCEY_					0	0	0		ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	A375_MHC_IP_R1	1	605.6436157226562	2	605.243757	1208.47296	-0.37421	-0.00022649	-0.51341	-0.00031074	-0.88762	-0.00053723	605.2439708796413	89.651	0.65676	89.651	89.375	90.032	0					25	12	3	0	0	0	0.53946	1	32942	32942		25.399	10.561	1	2311700			53829	4716	39159	39473	52546	52546					-0.12293587087788183
TIDTSMFCEY	10	Unmodified	_TIDTSMFCEY_					0	0	0		ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	A375_MHC_IP_R2	2	605.6433715820312	2	605.243757	1208.47296	-0.34932	-0.00021142	-1.1549	-0.00069898	-1.5042	-0.0009104	605.2434473665536	89.09	0.70407	89.821	89.482	90.186	0.7318					26	13	3	0	0	0	0.78945	1	33905	33905		19.257	9.1831	1	1949300			53830	4716	39159	39473	52547	52547					-0.12293587087788183
TIDVFFSMLQ	10	Unmodified	_TIDVFFSMLQ_					0	0	0			REV__SNX29|p.P770S|1|0.32|ENSG00000048471|chr16:12524831-12524831|C/T|missense_variant	REV__SNX29|p.P770S|1|0.32|ENSG00000048471|chr16:12524831-12524831|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	600.7000732421875	2	600.8021	1199.58965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.477	1	64.217	63.717	64.717	0.74022								0	0	0	0.15207	1	24065	24065		13.906	0.86358	1		+		53831	28022	39160	39474	52548	52548					-0.0021648080573868356
TIDVTVGSYPH	11	Unmodified	_TIDVTVGSYPH_					0	0	0			REV__ENSG00000204764|ENST00000523189|RANBP17	REV__ENSG00000204764|ENST00000523189|RANBP17	MSMS	A375_MHC_IP_R2	2	594.6971435546875	2	594.798403	1187.58225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.725	1	67.461	66.961	67.961	0.73631								0	0	0	0.16203	1	25278	25278		8.1555	0	1		+		53832	22539	39161	39475	52549	52549					-0.0040349708181111055
TIEAETMEW	9	Unmodified	_TIEAETMEW_					0	0	0			REV__tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1	REV__tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1	MSMS	A375_MHC_IP_R2	2	555.1741943359375	2	555.244615	1108.47468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.77	1	66.508	66.008	67.008	0.73811								0	0	0	0.1521	1	24936	24936		18.135	1.1927	1		+		53833	28628	39162	39476	52550	52550					-0.07522210007550711
TIEDEIIIK	9	Unmodified	_TIEDEIIIK_					0	0	0		tr|U7STH6|U7STH6_FUSNURrf2familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01487PE=4SV=1	tr|U7STH6|U7STH6_FUSNURrf2familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01487PE=4SV=1	tr|U7STH6|U7STH6_FUSNURrf2familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01487PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	358.6325378417969	3	358.54114	1072.60159	-0.04551	-1.6317E-05	-2.2961	-0.00082324	-2.3416	-0.00083956	358.5399049472379	19.56	0.20295	19.56	19.42	19.623	0					8	3	3	0	0	0	0.71541	1	4834	4834		4.5289	0	1	813180			53834	29693	39163	39477	52551	52551					0.0681945920907765
TIEDGIFEV	9	Unmodified	_TIEDGIFEV_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;HSPA1L|p.D215E|1|0.33|ENSG00000204390|chr6:31811328-31811328|A/T|missense_variant	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-SECPEP	A375_MHC_IP_R2	2	1022.4769897460938	1	1022.50407	1021.49679	0.23543	0.00024073	-0.27565	-0.00028185	-0.040219	-4.1124E-05	1022.50378940801	114.25	0.81008	114.96	114.58	115.39	0.70985					39	15	3	0	0	0	0.010813	1	43165	43165		111.29	56.513	1	21661000			53835	2906	39164	39478	52552	52552					-0.013096622674765968
TIEDGIFEV	9	Unmodified	_TIEDGIFEV_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;HSPA1L|p.D215E|1|0.33|ENSG00000204390|chr6:31811328-31811328|A/T|missense_variant	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MATCH	A375_MHC_IP_R1	1		1	1022.50407	1021.49679	0.61316	0.00062696	0.36367	0.00037186	0.97683	0.00099881	1022.5043188564565	114.95	0.86081	114.95	114.62	115.48	0	-0.005855	0.00030343	NaN	111.29	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19695000			53836	2906	39164	39478							-0.013096622674765968
TIEDSMTQV	9	Unmodified	_TIEDSMTQV_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.K10017Ifs*3|1|0.07|ENSG00000181143|chr19:8946720-8946721|-/A|frameshift_variant;MUC16|p.L10196Yfs*32|1|0.2|ENSG00000181143|chr19:8946183-8946183|A/-|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MSMS	A375_MHC_IP_R1	1	512.1691284179688	2	512.23679	1022.45903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.143	1	78.143	77.643	78.643	0								0	0	0	0.15486	1	28523	28523		12.532	1.7076	1				53837	8335	39165	39479	52553	52553					-0.05130496524577666
TIEEIFNNPQM	11	Unmodified	_TIEEIFNNPQM_					0	0	0		tr|U7SQS9|U7SQS9_FUSNUsite-specificDNA-methyltransferase(adenine-specific)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01567PE=4SV=1	tr|U7SQS9|U7SQS9_FUSNUsite-specificDNA-methyltransferase(adenine-specific)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01567PE=4SV=1	tr|U7SQS9|U7SQS9_FUSNUsite-specificDNA-methyltransferase(adenine-specific)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01567PE=4SV=1	MSMS	A375_MHC_IP_R2	2	668.2507934570312	2	668.316103	1334.61765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.538	1	93.277	92.777	93.777	0.73902								0	0	0	0.13186	1	35191	35191		29.082	1.4528	1				53838	29596	39166	39480	52554	52554					-0.03627202616326031
TIEEYPWTS	9	Unmodified	_TIEEYPWTS_					0	0	0			REV__ENSG00000168116|ENST00000370733|KIAA1586	REV__ENSG00000168116|ENST00000370733|KIAA1586	MSMS	A375_MHC_IP_R2	2	563.1680908203125	2	563.258579	1124.50261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.163	1	84.903	84.403	85.403	0.73962								0	0	0	0.15283	1	31990	31990		16.942	1.6938	1		+		53839	20828	39167	39481	52555	52555					-0.05466563755817333
TIEGLLIGN	9	Unmodified	_TIEGLLIGN_					0	0	0			REV__tr|U7T1G2|U7T1G2_FUSNUPTSsystem,nitrogenregulatoryIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00633PE=4SV=1	REV__tr|U7T1G2|U7T1G2_FUSNUPTSsystem,nitrogenregulatoryIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00633PE=4SV=1	MSMS	A375_MHC_IP_R1	1	465.1888122558594	2	465.26875	928.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.58	1	133.58	133.08	134.08	0								0	0	0	0.14359	1	51512	51512		28.487	1.6032	1		+		53840	28700	39168	39482	52556	52556					0.05582651694669494
TIEHTIYE	8	Unmodified	_TIEHTIYE_					0	0	0			REV__nc|ENSG00000156970|O60566-2|BUB1B	REV__nc|ENSG00000156970|O60566-2|BUB1B	MULTI-MSMS	A375_MHC_IP_R1	1	504.199951171875	2	503.248015	1004.48148	-0.76893	-0.00038696	-3.0465	-0.0015331	-3.8154	-0.0019201	503.24784616030894	67.864	0.75891	67.864	67.552	68.31	0					44	14	4	0	0	0	0.7754	1	24699	24699		11.64	0.81637	1	3915700	+		53841	20003	39169	39483	52557	52557					-0.020585290646749854
TIEIFEEEE	9	Unmodified	_TIEIFEEEE_					0	0	0			REV__ENSG00000227234|ENST00000449283|SPANXB1	REV__ENSG00000227234|ENST00000449283|SPANXB1	MULTI-SECPEP	A375_MHC_IP_R1	1	569.7017211914062	2	569.761152	1137.50775	-0.47523	-0.00027077	3.7181	0.0021184	3.2428	0.0018476	569.7631291690095	94.702	0.45911	94.702	94.394	94.853	0					11	8	2	0	0	0	0.71541	1	34811	34811		11.64	0.81637	1	501690	+		53842	22728	39170	39484	52558	52558					-0.05550304683856666
TIEKELISF	9	Unmodified	_TIEKELISF_					0	0	0		ENSG00000185267|ENST00000465530|CDNF	ENSG00000185267|ENST00000465530|CDNF	ENSG00000185267|ENST00000465530|CDNF	MULTI-SECPEP	A375_MHC_IP_R1	1	540.7025146484375	2	540.30279	1078.59103	-0.56212	-0.00030371	0.33246	0.00017963	-0.22965	-0.00012408	540.3028164642775	97.661	0.76071	97.661	97.187	97.948	0					30	14	3	0	0	0	0.03109	1	35847	35847		82.529	4.3799	1	5135000			53843	8653	39171	39485	52559	52559					0.05487476554662862
TIEKELISF	9	Unmodified	_TIEKELISF_					0	0	0		ENSG00000185267|ENST00000465530|CDNF	ENSG00000185267|ENST00000465530|CDNF	ENSG00000185267|ENST00000465530|CDNF	MULTI-SECPEP	A375_MHC_IP_R2	2	540.6566162109375	2	540.30279	1078.59103	-0.98727	-0.00053343	0.28819	0.00015571	-0.69908	-0.00037772	540.3028792199117	96.824	0.60527	97.58	97.268	97.873	0.75586					24	11	3	0	0	0	0.16595	1	36720	36720		53.404	9.5457	1	5583600			53844	8653	39171	39485	52560	52560					0.05487476554662862
TIEKERHEKIL	11	Unmodified	_TIEKERHEKIL_					0	0	0			REV__ENST00000506793.5_1_4:44680541-44700695:+|nuORF	REV__ENST00000506793.5_1_4:44680541-44700695:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	465.1888122558594	3	465.936664	1394.78816	-0.49787	-0.00023197	-0.76275	-0.00035539	-1.2606	-0.00058737	465.93616483783364	133.5	0.5085	133.5	133.3	133.81	0					16	9	2	0	0	0	0.99921	1	51512	51512		1.3296	0	1	5016600	+		53845	19776	39172	39486	52561	52561					0.10656076097461664
TIEKERHEKIL	11	Unmodified	_TIEKERHEKIL_					0	0	0			REV__ENST00000506793.5_1_4:44680541-44700695:+|nuORF	REV__ENST00000506793.5_1_4:44680541-44700695:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	465.1891174316406	3	465.936664	1394.78816	-0.57563	-0.00026821	-0.75733	-0.00035287	-1.333	-0.00062107	465.9361214448253	133.36	0.76218	133.52	133.3	134.06	0.16487					21	14	2	0	0	0	0.99921	1	52497	52497		0.08335	0	1	3029600	+		53846	19776	39172	39486	52562	52562					0.10656076097461664
TIEKNLFKI	9	Unmodified	_TIEKNLFKI_					0	0	0			REV__ENST00000475582.5_1_2:27590224-27590551:-|nuORF	REV__ENST00000475582.5_1_2:27590224-27590551:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	553.6975708007812	2	553.334424	1104.6543	-0.87612	-0.00048479	-3.6312	-0.0020093	-4.5074	-0.0024941	553.8321662022839	40.505	0.45832	41.279	41.031	41.489	0.77451					19	8	3	0	0	0	0.75466	1	15015	15015		4.3292	0	1	2562000	+		53847	25168	39173	39487	52563	52563					0.10615462062582992
TIELHENAVAL	11	Unmodified	_TIELHENAVAL_					0	0	0			REV__nc|ENSG00000137672|Q9Y210-2|TRPC6	REV__nc|ENSG00000137672|Q9Y210-2|TRPC6	MULTI-SECPEP	A375_MHC_IP_R1	1	605.7272338867188	2	605.327328	1208.6401	-0.21534	-0.00013035	-0.047502	-2.8755E-05	-0.26284	-0.00015911	605.3272775323826	56.422	0.50678	56.422	56.143	56.65	0					18	9	3	0	0	0	0.67995	1	20202	20202		26.268	0	1	3647500	+		53848	19024	39174	39488	52564	52564					0.04412764843618788
TIELQRQIR	9	Unmodified	_TIELQRQIR_					0	0	0			REV__ENSG00000166900|ENST00000337979|STX3	REV__ENSG00000166900|ENST00000337979|STX3	MULTI-MSMS	A375_MHC_IP_R1	1	579.3866577148438	2	578.843479	1155.67241	-0.32515	-0.00018821	-2.2179	-0.0012838	-2.5431	-0.001472	579.3451133996917	83.892	0.45526	83.892	83.786	84.241	0					12	8	2	0	0	0	0.69674	1	30693	30693		7.2892	0	1	817550	+		53849	20715	39175	39489	52565	52565					0.10079597037270105
TIELTPQDET	10	Unmodified	_TIELTPQDET_					0	0	0			REV__nc|ENSG00000142303|Q9H324|ADAMTS10	REV__nc|ENSG00000142303|Q9H324|ADAMTS10	MULTI-SECPEP	A375_MHC_IP_R2	2	573.6597290039062	2	573.779876	1145.5452	-0.062463	-3.584E-05	1.3575	0.00077893	1.2951	0.00074309	573.7807758289113	110.84	0.65996	111.58	111.19	111.85	0.73691					18	12	2	0	0	0	0.85226	1	41861	41861		20.454	5.6154	1	1034700	+		53850	19304	39176	39490	52566	52566					-0.02175213418263411
TIELWGYEE	9	Unmodified	_TIELWGYEE_					0	0	0		ENST00000463101.1_1_22:24579934-24582448:+|nuORF;ENSG00000099994|ENST00000358321|SUSD2	ENST00000463101.1_1_22:24579934-24582448:+|nuORF	ENST00000463101.1_1_22:24579934-24582448:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	570.1744995117188	2	570.266404	1138.51826	-0.051685	-2.9474E-05	0.30081	0.00017154	0.24913	0.00014207	570.2664498738562	108.86	1.3212	108.86	108.41	109.73	0					34	25	2	0	0	0	0.2264	1	39818	39818		36.044	14.507	1	3334900			53851	2098	39177	39491	52567	52567					-0.045462772387509176
TIELWGYEE	9	Unmodified	_TIELWGYEE_					0	0	0		ENST00000463101.1_1_22:24579934-24582448:+|nuORF;ENSG00000099994|ENST00000358321|SUSD2	ENST00000463101.1_1_22:24579934-24582448:+|nuORF	ENST00000463101.1_1_22:24579934-24582448:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	571.0110473632812	2	570.266404	1138.51826	-0.22716	-0.00012954	-0.59649	-0.00034016	-0.82365	-0.0004697	570.2660569458776	97.707	0.76149	97.707	97.389	98.151	0					39	14	4	0	0	0	0.63622	1	35968	35968		34.102	34.102	1	5853000			53852	2098	39177	39491	52568	52568					-0.045462772387509176
TIELWGYEE	9	Unmodified	_TIELWGYEE_					0	0	0		ENST00000463101.1_1_22:24579934-24582448:+|nuORF;ENSG00000099994|ENST00000358321|SUSD2	ENST00000463101.1_1_22:24579934-24582448:+|nuORF	ENST00000463101.1_1_22:24579934-24582448:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	570.6661376953125	2	570.266404	1138.51826	-0.39528	-0.00022541	0.26139	0.00014906	-0.13389	-7.6351E-05	570.2664748970807	83.814	0.80883	83.814	83.483	84.292	0					33	15	3	0	0	0	0.61452	1	30679	30679		36.044	13.308	1	2353500			53853	2098	39177	39491	52569	52569					-0.045462772387509176
TIELWGYEE	9	Unmodified	_TIELWGYEE_					0	0	0		ENST00000463101.1_1_22:24579934-24582448:+|nuORF;ENSG00000099994|ENST00000358321|SUSD2	ENST00000463101.1_1_22:24579934-24582448:+|nuORF	ENST00000463101.1_1_22:24579934-24582448:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	570.666259765625	2	570.266404	1138.51826	-0.29042	-0.00016562	0.023927	1.3645E-05	-0.26649	-0.00015197	570.2663470372523	83.18	0.71071	83.919	83.595	84.305	0.73962					25	13	3	0	0	0	0.25276	1	31629	31629		34.102	11.366	1	2397200			53854	2098	39177	39491	52570	52570					-0.045462772387509176
TIELWGYEE	9	Unmodified	_TIELWGYEE_					0	0	0		ENST00000463101.1_1_22:24579934-24582448:+|nuORF;ENSG00000099994|ENST00000358321|SUSD2	ENST00000463101.1_1_22:24579934-24582448:+|nuORF	ENST00000463101.1_1_22:24579934-24582448:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	570.6657104492188	2	570.266404	1138.51826	-0.49266	-0.00028095	-0.62505	-0.00035644	-1.1177	-0.00063739	570.2659913483502	97.056	1.6733	97.812	97.318	98.992	0.75586					59	32	3	0	0	0	0.1478	1	36801	36801		42.095	18.946	1	8197600			53855	2098	39177	39491	52571	52571					-0.045462772387509176
TIELWGYEE	9	Unmodified	_TIELWGYEE_					0	0	0		ENST00000463101.1_1_22:24579934-24582448:+|nuORF;ENSG00000099994|ENST00000358321|SUSD2	ENST00000463101.1_1_22:24579934-24582448:+|nuORF	ENST00000463101.1_1_22:24579934-24582448:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	570.6658935546875	2	570.266404	1138.51826	-0.30468	-0.00017375	0.11008	6.2772E-05	-0.19461	-0.00011098	570.2662796151722	108.16	1.5315	108.92	108.4	109.94	0.75436					41	29	2	0	0	0	0.1478	1	40825	40825		42.095	11.458	1	3360200			53856	2098	39177	39491	52572	52572					-0.045462772387509176
TIELWGYEE	9	Unmodified	_TIELWGYEE_					0	0	0		ENST00000463101.1_1_22:24579934-24582448:+|nuORF;ENSG00000099994|ENST00000358321|SUSD2	ENST00000463101.1_1_22:24579934-24582448:+|nuORF	ENST00000463101.1_1_22:24579934-24582448:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	570.266404	1138.51826	-0.29042	-0.00016562	0.023927	1.3645E-05	-0.26649	-0.00015197	570.2663470372523	83.18	0.71071	83.919	83.595	84.305	0.73962	0.052877	-0.00010893	NaN	34.102	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2397200			53857	2098	39177	39491							-0.045462772387509176
TIELWGYEE	9	Unmodified	_TIELWGYEE_					0	0	0		ENST00000463101.1_1_22:24579934-24582448:+|nuORF;ENSG00000099994|ENST00000358321|SUSD2	ENST00000463101.1_1_22:24579934-24582448:+|nuORF	ENST00000463101.1_1_22:24579934-24582448:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	570.266404	1138.51826	-0.30468	-0.00017375	0.11008	6.2772E-05	-0.19461	-0.00011098	570.2662796151722	108.16	1.5315	108.92	108.4	109.94	0.75436	0.027313	-0.00010801	NaN	42.095	41	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3360200			53858	2098	39177	39491							-0.045462772387509176
TIENYLMELKQ	11	Unmodified	_TIENYLMELKQ_					0	0	0			REV__KCNB2|p.P749Rfs*9|1|0.2|ENSG00000182674|chr8:72937598-72937598|C/-|frameshift_variant	REV__KCNB2|p.P749Rfs*9|1|0.2|ENSG00000182674|chr8:72937598-72937598|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	691.4527587890625	2	691.355228	1380.6959	-0.76189	-0.00052674	3.3122	0.0022899	2.5503	0.0017631	691.8582708016992	97.804	0.3065	98.56	98.432	98.739	0.75586					8	5	2	0	0	0	0.73189	1	37089	37089		7.1017	0	1	1278300	+		53859	21704	39178	39492	52573	52573					0.02078229968924461
TIEPPRMSV	9	Unmodified	_TIEPPRMSV_					0	0	0			REV__nc|ENSG00000143514|Q13625-2|TP53BP2	REV__nc|ENSG00000143514|Q13625-2|TP53BP2	MULTI-SECPEP	A375_MHC_IP_R1	1	515.166015625	2	515.273509	1028.53247	-0.50226	-0.0002588	-4.1604	-0.0021437	-4.6626	-0.0024025	515.7741779414208	103.94	0.55912	103.94	103.63	104.18	0					20	10	3	0	0	0	0.62767	1	38217	38217		7.2892	0	1	1318500	+		53860	19366	39179	39493	52574	52574					0.019340967085327065
TIEQRYLL	8	Unmodified	_TIEQRYLL_					0	0	0		tr|U7SU73|U7SU73_FUSNUDUF4375domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01044PE=4SV=1	tr|U7SU73|U7SU73_FUSNUDUF4375domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01044PE=4SV=1	tr|U7SU73|U7SU73_FUSNUDUF4375domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01044PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	518.6950073242188	2	518.295299	1034.57605	-0.89005	-0.00046131	1.2279	0.0006364	0.33782	0.00017509	518.2956197429708	66.12	0.76479	66.858	66.324	67.089	0.73811					26	14	3	0	0	0	0.94479	1	25067	25067		8.5933	4.264	1	3307500			53861	29745	39180	39494	52575	52575					0.060140294773418645
TIESREGAIY	10	Unmodified	_TIESREGAIY_					0	0	0		tr|U7STJ8|U7STJ8_FUSNUAdenosylcobinamide-GDPribazoletransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobSPE=3SV=1	tr|U7STJ8|U7STJ8_FUSNUAdenosylcobinamide-GDPribazoletransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobSPE=3SV=1	tr|U7STJ8|U7STJ8_FUSNUAdenosylcobinamide-GDPribazoletransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobSPE=3SV=1	MSMS	A375_MHC_IP_R1	1	569.7984619140625	2	569.790578	1137.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.03	1	107.03	106.53	107.53	0								0	0	0	0.15105	1	39279	39279		15.847	7.2539	1				53862	29700	39181	39495	52576	52576					0.0033221640117062634
TIEYDTRHRI	10	Unmodified	_TIEYDTRHRI_					0	0	0			REV__tr|U7T318|U7T318_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00359PE=4SV=1	REV__tr|U7T318|U7T318_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00359PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	435.1659240722656	3	435.229959	1302.66805	-0.089023	-3.8746E-05	-0.039425	-1.7159E-05	-0.12845	-5.5904E-05	435.22964007399776	44.019	0.4551	44.788	44.58	45.035	0.7691					20	8	3	0	0	0	0.70496	1	16515	16515		5.7834	0	1	2335300	+		53863	28763	39182	39496	52577	52577					0.02882087823695656
TIFFISDVI	9	Unmodified	_TIFFISDVI_					0	0	0		tr|U7SP67|U7SP67_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01745PE=4SV=1	tr|U7SP67|U7SP67_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01745PE=4SV=1	tr|U7SP67|U7SP67_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01745PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	351.9695129394531	3	352.198826	1053.57465	-0.33813	-0.00011909	-1.0036	-0.00035346	-1.3417	-0.00047255	352.1984675575242	28.012	0.20099	28.012	27.887	28.088	0					5	3	2	0	0	0	0.62767	1	8528	8528		11.495	3.3392	1	1170500			53864	29569	39183	39497	52578	52578					0.05000395388560719
TIFIYFLI	8	Unmodified	_TIFIYFLI_					0	0	0			REV__ENSG00000065308|ENST00000182527|TRAM2	REV__ENSG00000065308|ENST00000182527|TRAM2	MULTI-MSMS	A375_MHC_IP_R1	1	515.703857421875	2	515.304604	1028.59466	-0.49837	-0.00025681	0.025319	1.3047E-05	-0.47305	-0.00024376	515.3046238993915	100.59	0.7603	100.59	100.28	101.04	0					18	14	2	0	0	0	0.64599	1	37009	37009		42.968	0	1	1318100	+		53865	16492	39184	39498	52579	52579					0.0815019111919355
TIFIYFLI	8	Unmodified	_TIFIYFLI_					0	0	0			REV__ENSG00000065308|ENST00000182527|TRAM2	REV__ENSG00000065308|ENST00000182527|TRAM2	MULTI-SECPEP	A375_MHC_IP_R2	2	515.704345703125	2	515.304604	1028.59466	-0.51064	-0.00026314	-0.85689	-0.00044156	-1.3675	-0.00070469	515.3040554297987	99.722	0.55853	100.49	100.17	100.73	0.76278					17	10	2	0	0	0	0.73517	1	37852	37852		42.968	0	1	1599400	+		53866	16492	39184	39498	52580	52580					0.0815019111919355
TIFLDEIGEM	10	Unmodified	_TIFLDEIGEM_					0	0	0		tr|U7SSA3|U7SSA3_FUSNUSigma-54factorinteractiondomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01556PE=4SV=1	tr|U7SSA3|U7SSA3_FUSNUSigma-54factorinteractiondomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01556PE=4SV=1	tr|U7SSA3|U7SSA3_FUSNUSigma-54factorinteractiondomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01556PE=4SV=1	MSMS	A375_MHC_IP_R2	2	584.0283203125	2	584.28374	1166.55293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.54	1	124.87	124.37	125.37	0.32969								0	0	0	0.15158	1	48207	48207		14.838	1.7958	1				53867	29626	39185	39499	52581	52581					-0.023687774223162705
TIFLWIFW	8	Unmodified	_TIFLWIFW_					0	0	0		nc|ENSG00000132677|Q9H310-5|RHBG;nc|ENSG00000132677|Q9H310-4|RHBG;nc|ENSG00000132677|Q9H310-3|RHBG;nc|ENSG00000132677|Q9H310-2|RHBG;RHBG|p.D425Rfs*18|1|0.29|ENSG00000132677|chr1:156384557-156384558|-/T|frameshift_variant;ENSG00000132677|ENST00000537040|RHBG	nc|ENSG00000132677|Q9H310-5|RHBG	nc|ENSG00000132677|Q9H310-5|RHBG	MULTI-SECPEP	A375_MHC_IP_R2	2	376.29229736328125	3	375.875906	1124.60589	0.2254	8.4722E-05	1.4211	0.00053415	1.6465	0.00061887	376.2107384104341	45.437	0.35487	46.202	46.048	46.403	0.76519					9	6	2	0	0	0	0.96296	1	16930	16930		3.9444	0	1	456870			53868	4438	39186	39500	52582	52582					0.048570132133363586
TIFRYSSV	8	Unmodified	_TIFRYSSV_					0	0	0			REV__ENST00000418538.1_1_3:53508733-53508949:-|nuORF	REV__ENST00000418538.1_1_3:53508733-53508949:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	486.1533508300781	2	486.761092	971.507631	-0.058892	-2.8666E-05	-0.31606	-0.00015385	-0.37495	-0.00018251	486.76083117502895	71.64	1.7226	71.64	70.953	72.676	0					58	33	2	0	0	0	0.91495	1	26291	26291		7.9102	5.6074	1	2736600	+		53869	24556	39187	39501	52583	52583					0.020737848974818007
TIFSNSVFF	9	Unmodified	_TIFSNSVFF_					0	0	0			REV__ENST00000487947.6_1_3:167437995-167452264:-|nuORF	REV__ENST00000487947.6_1_3:167437995-167452264:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	531.6687622070312	2	531.26875	1060.52295	-0.53794	-0.00028579	-0.60307	-0.00032039	-1.141	-0.00060618	531.2683464150274	98.794	0.60677	99.554	99.251	99.858	0.75977					14	11	2	0	0	0	0.14922	1	37499	37499		41.84	6.9076	1	1568100	+		53870	24976	39188	39502	52584	52584					-0.004893483053365344
TIFVNLREV	9	Unmodified	_TIFVNLREV_					0	0	0			REV__ENSG00000187474|ENST00000339223|FPR3	REV__ENSG00000187474|ENST00000339223|FPR3	MULTI-SECPEP	A375_MHC_IP_R2	2	546.527587890625	2	545.816399	1089.61824	-0.76213	-0.00041598	0.032184	1.7567E-05	-0.72995	-0.00039842	545.8161359927509	83.452	0.86314	84.191	83.645	84.508	0.73962					28	16	3	0	0	0	0.50702	1	31798	31798		19.257	5.3509	1	3930600	+		53871	22021	39189	39503	52585	52585					0.07702004885709357
TIFVSSAVRK	10	Unmodified	_TIFVSSAVRK_					0	0	0			REV__nc|ENSG00000162458|Q8WUP2-2|FBLIM1	REV__nc|ENSG00000162458|Q8WUP2-2|FBLIM1	MULTI-SECPEP	A375_MHC_IP_R1	1	369.2611083984375	3	369.888874	1106.64479	0.62657	0.00023176	-0.6576	-0.00024324	-0.031032	-1.1478E-05	369.88889581417203	22.747	0.30097	22.747	22.623	22.924	0					8	5	2	0	0	0	0.92957	1	6208	6208		0.56317	0.35631	1	579570	+		53872	20257	39190	39504	52586	52586					0.09573693777042536
TIGALLTVA	9	Unmodified	_TIGALLTVA_					0	0	0			REV__ENSG00000165168|ENST00000378588|CYBB	REV__ENSG00000165168|ENST00000378588|CYBB	MULTI-MSMS	A375_MHC_IP_R1	1	859.4829711914062	1	858.529495	857.522219	0.21448	0.00018414	0.52869	0.00045389	0.74317	0.00063803	858.5297085889214	114.05	0.36	114.05	113.85	114.21	0					11	6	2	0	0	0	0.25276	1	41766	41766		34.102	0	1	5180700	+		53873	20555	39191	39505	52587	52587					0.08775857045600333
TIGFKLPNHR	10	Unmodified	_TIGFKLPNHR_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000082397|Q9Y2J2-3|EPB41L3;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;ENSG00000088367|ENST00000338074|EPB41L1	nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000088367|Q9H4G0-4|EPB41L1	nc|ENSG00000079819|O43491-3|EPB41L2	MULTI-MSMS	A375_MHC_IP_R1	1	395.2956237792969	3	394.896252	1181.66693	0.12123	4.7872E-05	-0.96313	-0.00038034	-0.8419	-0.00033246	394.89563985987184	78.355	0.5582	78.355	77.998	78.556	0					17	10	2	0	0	0	0.71364	1	28591	28591		6.1918	1.4759	1	1769800			53874	1704;1890	39192	39506	52588	52588					0.08335918245461471
TIGFKLPNHR	10	Unmodified	_TIGFKLPNHR_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000082397|Q9Y2J2-3|EPB41L3;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;ENSG00000088367|ENST00000338074|EPB41L1	nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000088367|Q9H4G0-4|EPB41L1	nc|ENSG00000079819|O43491-3|EPB41L2	MULTI-MATCH	A375_MHC_IP_R2	2		3	394.896252	1181.66693	-0.15394	-6.0791E-05	-1.0845	-0.00042826	-1.2384	-0.00048905	394.89572506557215	77.329	0.50812	78.072	77.807	78.315	0.74293	-0.14152	-3.8475E-05	NaN	6.1918	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1312500			53875	1704;1890	39192	39506							0.08335918245461471
TIGGPQKYAL	10	Unmodified	_TIGGPQKYAL_					0	0	0			REV__ENST00000465695.1_1_10:75532330-75533574:+|nuORF	REV__ENST00000465695.1_1_10:75532330-75533574:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	524.1400146484375	2	524.295299	1046.57605	-0.32045	-0.00016801	0.47511	0.0002491	0.15466	8.1088E-05	524.295614355532	82.444	0.60931	82.444	82.113	82.722	0					17	11	2	0	0	0	0.88918	1	30103	30103		8.7454	0	1	1559100	+		53876	22243	39193	39507	52589	52589					0.054620294773030764
TIGIDAAVQI	10	Unmodified	_TIGIDAAVQI_					0	0	0		ENSG00000119720|ENST00000354366|NRDE2;ENST00000555903.1_1_14:90745249-90755225:-|nuORF	ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	MULTI-MSMS	A375_MHC_IP_R1	1	501.63580322265625	2	500.787307	999.560061	-0.33166	-0.00016609	0.030275	1.5161E-05	-0.30139	-0.00015093	500.7872931615886	96.468	0.66065	96.468	96.223	96.883	0					27	12	3	0	0	0	0.050548	1	35495	35495		75.761	0	1	4509800			53877	3616	39194	39508	52590	52590					0.060263232404167866
TIGKQLTF	8	Unmodified	_TIGKQLTF_					0	0	0			REV__ENST00000467994.1_1_3:120157212-120157281:-|nuORF	REV__ENST00000467994.1_1_3:120157212-120157281:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	454.94903564453125	2	454.26601	906.517468	-0.059443	-2.7003E-05	-0.78505	-0.00035662	-0.8445	-0.00038363	454.2657057061902	71.4	0.45782	71.4	71.108	71.565	0					13	8	2	0	0	0	0.69122	1	25974	25974		32.305	0	1	2420500	+		53878	25067	39195	39509	52591	52591					0.06046972902845482
TIGKQLTF	8	Unmodified	_TIGKQLTF_					0	0	0			REV__ENST00000467994.1_1_3:120157212-120157281:-|nuORF	REV__ENST00000467994.1_1_3:120157212-120157281:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	454.66552734375	2	454.26601	906.517468	-0.17752	-8.064E-05	-0.46797	-0.00021258	-0.64549	-0.00029322	454.2657795373428	70.456	0.45767	71.19	70.895	71.352	0.73421					15	8	2	0	0	0	0.57209	1	26696	26696		46.021	2.1627	1	1784000	+		53879	25067	39195	39509	52592	52592					0.06046972902845482
TIGKQLTF	8	Unmodified	_TIGKQLTF_					0	0	0			REV__ENST00000467994.1_1_3:120157212-120157281:-|nuORF	REV__ENST00000467994.1_1_3:120157212-120157281:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	454.26601	906.517468	-0.17752	-8.064E-05	-0.46797	-0.00021258	-0.64549	-0.00029322	454.2657795373428	70.456	0.45767	71.19	70.895	71.352	0.73421	-0.10475	0.00013137	NaN	46.021	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1784000	+		53880	25067	39195	39509							0.06046972902845482
TIGLSWIDCL	10	Unmodified	_TIGLSWIDCL_					0	0	0			REV__nc|ENSG00000104814|Q92918|MAP4K1	REV__nc|ENSG00000104814|Q92918|MAP4K1	MULTI-SECPEP	A375_MHC_IP_R1	1	560.9334106445312	2	560.788992	1119.56343	-0.42544	-0.00023858	-2.83	-0.001587	-3.2554	-0.0018256	561.2902976176836	98.11	0.45549	98.11	97.896	98.352	0					10	8	2	0	0	0	0.85226	1	36035	36035		6.2058	0	1	690280	+		53881	17340	39196	39510	52593	52593					0.008432500227627315
TIGMEDSPDL	10	Unmodified	_TIGMEDSPDL_					0	0	0		ASNS|p.A287T|1|0.55|ENSG00000070669|chr7:97858322-97858322|C/T|missense_variant	ASNS|p.A287T|1|0.55|ENSG00000070669|chr7:97858322-97858322|C/T|missense_variant	ASNS|p.A287T|1|0.55|ENSG00000070669|chr7:97858322-97858322|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	360.2304992675781	3	359.830473	1076.46959	0.17132	6.1647E-05	0.088112	3.1705E-05	0.25943	9.3352E-05	359.83038589624556	102.03	0.65749	102.03	101.7	102.35	0					20	12	2	0	0	0	0.91643	1	37521	37521		16.566	3.6933	1	1659800			53882	193	39197	39511	52594	52594					-0.06558513870163551
TIGMEDSPDL	10	Unmodified	_TIGMEDSPDL_					0	0	0		ASNS|p.A287T|1|0.55|ENSG00000070669|chr7:97858322-97858322|C/T|missense_variant	ASNS|p.A287T|1|0.55|ENSG00000070669|chr7:97858322-97858322|C/T|missense_variant	ASNS|p.A287T|1|0.55|ENSG00000070669|chr7:97858322-97858322|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	359.830473	1076.46959	-0.10025	-3.6073E-05	0.38029	0.00013684	0.28004	0.00010077	359.8305584269511	101.29	0.76208	102.06	101.75	102.51	0.76429	0.016016	9.3484E-05	NaN	16.566	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1196300			53883	193	39197	39511							-0.06558513870163551
TIGPTSLLSH	10	Unmodified	_TIGPTSLLSH_					0	0	0			REV__ENST00000502875.1_1_4:141563950-141565549:-|nuORF	REV__ENST00000502875.1_1_4:141563950-141565549:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	514.199951171875	2	513.284931	1024.55531	-0.20972	-0.00010764	-0.096143	-4.9349E-05	-0.30586	-0.00015699	513.2848666259879	70.008	1.6301	70.008	69.529	71.159	0					98	31	5	0	0	0	0.55789	1	25433	25433		24.021	0.23079	1	83317000	+		53884	25508	39198	39512	52595	52595					0.04401439097682669
TIGSRDSNL	9	Unmodified	_TIGSRDSNL_					0	0	0			REV__ENST00000426198.5_1_7:43921528-43965754:-|nuORF	REV__ENST00000426198.5_1_7:43921528-43965754:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	481.6822509765625	2	481.748713	961.482873	-0.78866	-0.00037993	3.2051	0.0015441	2.4165	0.0011641	481.75077335758925	34.989	0.50487	35.752	35.475	35.98	0.76338					14	9	2	0	0	0	0.3607	1	12659	12659		20.454	0	1	2752300	+		53885	24648	39199	39513	52596	52596					0.0005910502410415575
TIGTIKIDMQ	10	Unmodified	_TIGTIKIDMQ_					0	0	0			REV__tr|U7SL89|U7SL89_FUSNUPolyribonucleotidenucleotidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pnpPE=3SV=1	REV__tr|U7SL89|U7SL89_FUSNUPolyribonucleotidenucleotidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pnpPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	560.6121826171875	2	560.307549	1118.60055	-0.57615	-0.00032282	-1.7566	-0.00098423	-2.3327	-0.0013071	560.3069182981861	83.923	0.56451	84.662	84.407	84.971	0.73962					13	10	2	0	0	0	0.90513	1	31981	31981		17.113	5.6182	1	783060	+		53886	28265	39200	39514	52597	52597					0.04598921568526748
TIGVIGTTSS	10	Unmodified	_TIGVIGTTSS_					0	0	0		nc|ENSG00000177398|Q5DID0-4|UMODL1;nc|ENSG00000177398|Q5DID0-2|UMODL1	nc|ENSG00000177398|Q5DID0-4|UMODL1	nc|ENSG00000177398|Q5DID0-4|UMODL1	MULTI-MSMS	A375_MHC_IP_R1	1	468.6553955078125	2	468.25584	934.497126	-0.13458	-6.3017E-05	-0.56234	-0.00026332	-0.69692	-0.00032634	468.255545974331	110.19	0.76123	110.19	109.78	110.54	0					19	14	2	0	0	0	0.71466	1	40420	40420		5.7319	1.4026	1	1896300			53887	14785	39201	39515	52598	52598					0.027257574523900985
TIGVIMTMLY	10	Unmodified	_TIGVIMTMLY_					0	0	0			REV__ENSG00000155760|ENST00000286201|FZD7	REV__ENSG00000155760|ENST00000286201|FZD7	MULTI-SECPEP	A375_MHC_IP_R2	2	571.28369140625	2	571.303421	1140.59229	-0.20912	-0.00011947	-0.96037	-0.00054866	-1.1695	-0.00066813	571.3029056798919	89.1	0.85709	89.832	89.482	90.339	0.7318					26	16	3	0	0	0	0.91556	1	33981	33981		10.074	0	1	3000000	+		53888	19937	39202	39516	52599	52599					0.027616513275688703
TIHGYKREL	9	Unmodified	_TIHGYKREL_					0	0	0			REV__ENSG00000284395|ENST00000640283|PERCC1	REV__ENSG00000284395|ENST00000640283|PERCC1	MULTI-SECPEP	A375_MHC_IP_R1	1	372.2959289550781	3	372.876857	1115.60874	0.10798	4.0265E-05	0.51964	0.00019376	0.62762	0.00023403	372.87715941275417	30.961	0.55761	30.961	30.653	31.211	0					16	10	2	0	0	0	0.76187	1	9928	9928		2.2828	0	1	815650	+		53889	23002	39203	39517	52600	52600					0.05556236600182274
TIHKNSEM	8	Unmodified	_TIHKNSEM_					0	0	0			REV__ENSG00000104237|ENST00000220676|RP1	REV__ENSG00000104237|ENST00000220676|RP1	MSMS	A375_MHC_IP_R2	2	480.1787109375	2	480.234384	958.454216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.01	1	132.19	131.69	132.69	0.18953								0	0	0	0.16876	1	51928	51928		8.5933	0	1		+		53890	17310	39204	39518	52601	52601					-0.026673358766970523
TIHQIVRQW	9	Unmodified	_TIHQIVRQW_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000478082.5_1_7:100856177-100861250:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	A375_MHC_IP_R1	1	394.6243896484375	3	394.224368	1179.65128	0.090958	3.5858E-05	-0.16252	-6.4068E-05	-0.071559	-2.821E-05	394.22428908877026	42.139	1.5721	42.139	41.828	43.4	0					58	30	2	0	0	0	0.0042961	2	14548	14548;14792		136.39	82.988	1	18947000			53891	2688	39205	39519	52602;52603	52602					0.06863631728401742
TIHQIVRQW	9	Unmodified	_TIHQIVRQW_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000478082.5_1_7:100856177-100861250:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-SECPEP	A375_MHC_IP_R1	1	591.2330322265625	2	590.832914	1179.65128	-0.27253	-0.00016102	0.16949	0.00010014	-0.10305	-6.0884E-05	590.833120364789	42.107	0.95989	42.107	41.932	42.891	0					27	18	2	0	0	0	0.12938	1	14592	14592		69.338	50.081	1	3220000			53892	2688	39205	39519	52604	52604					0.06863631728401742
TIHQIVRQW	9	Unmodified	_TIHQIVRQW_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000478082.5_1_7:100856177-100861250:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	A375_MHC_IP_R2	2	394.62420654296875	3	394.224368	1179.65128	-0.35027	-0.00013809	-1.1118	-0.00043831	-1.4621	-0.0005764	394.2243346180243	41.217	1.5785	41.992	41.692	43.27	0.77451					84	30	7	0	0	0	0.0085482	2	15254	15254;15491		128.57	73.324	1	19559000			53893	2688	39205	39519	52605;52606	52605					0.06863631728401742
TIHQIVRQW	9	Unmodified	_TIHQIVRQW_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000478082.5_1_7:100856177-100861250:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-SECPEP	A375_MHC_IP_R2	2	591.2324829101562	2	590.832914	1179.65128	-0.78886	-0.00046609	0.36254	0.0002142	-0.42632	-0.00025188	590.8330684182863	41.218	0.65846	41.993	41.743	42.401	0.77451					19	12	2	0	0	0	0.091861	1	15295	15295		76.825	42.722	1	3136800			53894	2688	39205	39519	52607	52607					0.06863631728401742
TIHRRKRRRR	10	Unmodified	_TIHRRKRRRR_					0	0	0		nc|ENSG00000062650|Q7Z5K2-2|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	MULTI-SECPEP	A375_MHC_IP_R2	2	359.88275146484375	4	359.482989	1433.90285	-0.11957	-4.2983E-05	-0.28468	-0.00010234	-0.40425	-0.00014532	359.7336141135356	46.21	0.81279	46.975	46.654	47.466	0.76519					36	15	4	0	0	0	0.95065	1	17486	17486		0.10794	0.10794	1	15908000			53895	14469	39206	39520	52608	52608					0.20325287933292202
TIHRRKRRRR	10	Unmodified	_TIHRRKRRRR_					0	0	0		nc|ENSG00000062650|Q7Z5K2-2|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	MULTI-SECPEP	A375_MHC_IP_R2	2	359.88275146484375	4	359.482989	1433.90285	-0.057608	-2.0709E-05	-0.54801	-0.000197	-0.60562	-0.00021771	359.4827426034457	46.523	0.5094	47.288	47.108	47.617	0.76519					23	9	3	0	0	0	0.95065	1	17486	17486		0.10794	0.10794	1	14285000			53896	14469	39206	39520	52609	52609					0.20325287933292202
TIICYFVI	8	Unmodified	_TIICYFVI_					0	0	0			REV__tr|U7T298|U7T298_FUSNUCitratetransporter-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00631PE=3SV=1	REV__tr|U7T298|U7T298_FUSNUCitratetransporter-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00631PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	486.728759765625	2	486.267164	970.519776	-0.389	-0.00018916	0.45466	0.00022109	0.065666	3.1931E-05	486.2672628200707	112.72	1.4813	113.44	112.61	114.09	0.72459					36	28	2	0	0	0	0.88799	1	42661	42661		20.871	6.2895	1	1826400	+		53897	28728	39207	39521	52610	52610					0.03333685316295032
TIILLGSSPL	10	Unmodified	_TIILLGSSPL_					0	0	0		nc|ENSG00000181355|Q8IZS5|OFCC1;nc|ENSG00000181355|Q8IZS5-2|OFCC1	nc|ENSG00000181355|Q8IZS5|OFCC1	nc|ENSG00000181355|Q8IZS5|OFCC1	MULTI-SECPEP	A375_MHC_IP_R2	2	507.71533203125	2	507.3157	1012.61685	-0.66316	-0.00033643	0.30371	0.00015408	-0.35946	-0.00018236	507.3157569385012	69.728	0.66105	70.462	70.233	70.895	0.73421					25	12	3	0	0	0	0.11184	1	26452	26452		58.679	0	1	4318100			53898	14796	39208	39522	52611	52611					0.11104370796954299
TIINGSQVW	9	Unmodified	_TIINGSQVW_					0	0	0		chr12:55971767-55973244|423|10.35|0.27|5.24|-|ENST00000549233|PMEL,PMEL;chr12:55971109-55971745|419|10.47|0.11|6.62|-|ENST00000549233|PMEL,PMEL;chr12:55961732-55970953|441|1145.2|0.37|11.59|-|ENST00000549233|PMEL,PMEL;ENST00000550590.5_1_12:56352149-56359825:-|nuORF;chr12:55961463-55965936|420|410.32|0.14|11.49|-|ENST00000550447|PMEL,PMEL;chr12:55955863-55958473|352|18.95|0.0|13.15|-|ENST00000550447|PMEL,PMEL;chr12:55957386-55958473|425|508.4|0.14|11.86|-|ENST00000548803|PMEL,PMEL;chr12:55957671-55958473|422|689.45|0.2|11.73|-|ENST00000547137|PMEL,PMEL;nc|ENSG00000185664|P40967-4|PMEL;nc|ENSG00000185664|P40967-5|PMEL;ENSG00000185664|ENST00000548747|PMEL;nc|ENSG00000185664|P40967-2|PMEL	chr12:55971767-55973244|423|10.35|0.27|5.24|-|ENST00000549233|PMEL,PMEL	chr12:55971767-55973244|423|10.35|0.27|5.24|-|ENST00000549233|PMEL,PMEL	MULTI-SECPEP	A375_MHC_IP_R1	1	509.67181396484375	2	509.271824	1016.5291	-0.21903	-0.00011155	-0.15914	-8.1047E-05	-0.37817	-0.00019259	509.2716543348803	54.11	0.55464	54.11	53.809	54.364	0					25	10	3	0	0	0	0.24479	1	19296	19296		34.102	0	1	5876700			53899	417	39209	39523	52612	52612					0.021491699262014663
TIISTYIEL	9	Unmodified	_TIISTYIEL_					0	0	0			REV__ENST00000347476.10_1_14:26949342-27064673:-|nuORF	REV__ENST00000347476.10_1_14:26949342-27064673:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	526.17724609375	2	526.79734	1051.58013	-0.36225	-0.00019083	0.51433	0.00027095	0.15208	8.0116E-05	526.797382461341	111.03	0.51138	111.03	110.85	111.36	0					12	9	2	0	0	0	0.3243	1	40692	40692		28.487	8.0332	1	835830	+		53900	23781	39210	39524	52613	52613					0.05640074180382726
TIITLNELI	9	Unmodified	_TIITLNELI_					0	0	0			REV__OR6C4|p.G39E|1|0.32|ENSG00000179626|chr12:55551342-55551342|G/A|missense_variant	REV__OR6C4|p.G39E|1|0.32|ENSG00000179626|chr12:55551342-55551342|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	515.7124633789062	2	515.313158	1028.61176	-0.26349	-0.00013578	-1.4543	-0.00074939	-1.7177	-0.00088517	515.3128319914297	92.708	0.45826	92.708	92.463	92.922	0					16	8	2	0	0	0	0.16676	1	34073	34073		58.679	14.906	1	2715800	+		53901	27695	39211	39525	52614	52614					0.098600669343341
TIITLNELI	9	Unmodified	_TIITLNELI_					0	0	0			REV__OR6C4|p.G39E|1|0.32|ENSG00000179626|chr12:55551342-55551342|G/A|missense_variant	REV__OR6C4|p.G39E|1|0.32|ENSG00000179626|chr12:55551342-55551342|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	515.7124633789062	2	515.313158	1028.61176	-0.67501	-0.00034784	-1.385	-0.00071371	-2.06	-0.0010615	515.3131194661416	91.717	0.5067	92.452	92.273	92.78	0.7345					17	9	2	0	0	0	0.034481	1	34908	34908		71.134	3.0529	1	2644700	+		53902	27695	39211	39525	52615	52615					0.098600669343341
TIITRTGP	8	Unmodified	_TIITRTGP_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.K10017Ifs*3|1|0.07|ENSG00000181143|chr19:8946720-8946721|-/A|frameshift_variant;MUC16|p.L10196Yfs*32|1|0.2|ENSG00000181143|chr19:8946183-8946183|A/-|frameshift_variant;MUC16|p.N7637Ifs*2|1|0.95|ENSG00000181143|chr19:8953860-8953860|T/-|frameshift_variant;MUC16|p.P6742S|1|0.16|ENSG00000181143|chr19:8956546-8956546|G/A|missense_variant;MUC16|p.L6743F|1|0.45|ENSG00000181143|chr19:8956543-8956543|G/A|missense_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	A375_MHC_IP_R1	1	430.15606689453125	2	429.75581	857.497067	-0.070977	-3.0503E-05	-0.40603	-0.0001745	-0.47701	-0.000205	429.7557998644367	56.946	0.40646	56.946	56.753	57.159	0					13	7	2	0	0	0	0.94479	1	20437	20437		4.756	0	1	1526200			53903	8335	39212	39526	52616	52616					0.06261802243034253
TIKDLVRHI	9	Unmodified	_TIKDLVRHI_					0	0	0			REV__nc|ENSG00000091831|P03372-3|ESR1	REV__nc|ENSG00000091831|P03372-3|ESR1	MULTI-MSMS	A375_MHC_IP_R2	2	365.9608459472656	3	365.560869	1093.66078	-0.21993	-8.0399E-05	-0.26745	-9.7768E-05	-0.48738	-0.00017817	365.56079568662534	57.884	0.50599	58.633	58.323	58.829	0.74895					16	9	2	0	0	0	0.73491	1	21931	21931		3.8763	0	1	1731200	+		53904	16957	39213	39527	52617	52617					0.11769400013940867
TIKESSINW	9	Unmodified	_TIKESSINW_					0	0	0			REV__ENSG00000153283|ENST00000352690|CD96	REV__ENSG00000153283|ENST00000352690|CD96	MULTI-SECPEP	A375_MHC_IP_R1	1	538.70263671875	2	539.282389	1076.55022	-0.5909	-0.00031866	-0.051325	-2.7679E-05	-0.64222	-0.00034634	539.282332560948	57.018	0.61227	57.018	56.701	57.313	0					27	11	3	0	0	0	0.20451	1	20471	20471		57.722	7.789	1	10049000	+		53905	19835	39214	39528	52618	52618					0.01501135235048423
TIKKEKNV	8	Unmodified	_TIKKEKNV_					0	0	0		LEPR|p.M654I|1|0.18|ENSG00000116678|chr1:65610263-65610263|G/A|missense_variant	LEPR|p.M654I|1|0.18|ENSG00000116678|chr1:65610263-65610263|G/A|missense_variant	LEPR|p.M654I|1|0.18|ENSG00000116678|chr1:65610263-65610263|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	480.19976806640625	2	480.297842	958.581131	-0.54381	-0.00026119	0.032216	1.5473E-05	-0.51159	-0.00024572	480.29807024071613	78.142	0.45912	78.885	78.572	79.031	0.74293					14	8	2	0	0	0	0.8824	1	29726	29726		11.64	0	1	1877600			53906	14292	39215	39529	52619	52619					0.10018333339951369
TIKKKEQM	8	Unmodified	_TIKKKEQM_					0	0	0			REV__ENSG00000216937|ENST00000639629|CCDC7	REV__ENSG00000216937|ENST00000639629|CCDC7	MULTI-MSMS	A375_MHC_IP_R1	1	504.83782958984375	2	503.291702	1004.56885	-0.27457	-0.00013819	-2.2583	-0.0011366	-2.5329	-0.0012748	503.29148155429186	88.584	1.0188	88.584	87.848	88.867	0					40	19	4	0	0	0	0.75805	1	32498	32498		18.135	1.1927	1	7745900	+		53907	22680	39216	39530	52620	52620					0.06674973605254308
TIKKREKDP	9	Unmodified	_TIKKREKDP_					0	0	0			REV__ENST00000444408.1_1_2:224640835-224702600:-|nuORF	REV__ENST00000444408.1_1_2:224640835-224702600:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	372.2744445800781	3	372.224146	1113.65061	0.30352	0.00011298	-0.43497	-0.00016191	-0.13146	-4.8931E-05	372.22381623081463	55.022	0.71374	55.773	55.37	56.084	0.75075					17	13	2	0	0	0	0.80332	1	20891	20891		0.20686	0.20686	1	1596000	+		53908	19787	39217	39531	52621	52621					0.09832792288693781
TIKNFLGTRL	10	Unmodified	_TIKNFLGTRL_					0	0	0			REV__ENST00000562994.5_2_16:86580251-86585743:-|nuORF	REV__ENST00000562994.5_2_16:86580251-86585743:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	388.29254150390625	3	388.236274	1161.68699	0.59541	0.00023116	-0.96624	-0.00037513	-0.37083	-0.00014397	388.23579218059905	48.429	0.60741	48.429	48.274	48.882	0					14	8	2	0	0	0	0.86608	1	17102	17102		13.519	0	1	3134600	+		53909	17262	39218	39532	52622	52622					0.11261669185432766
TIKNKRGP	8	Unmodified	_TIKNKRGP_					0	0	0			REV__ENST00000233156.8_2_2:188418967-188419015:-|nuORF	REV__ENST00000233156.8_2_2:188418967-188419015:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	457.1426696777344	2	457.282526	912.550499	-0.16425	-7.5111E-05	-0.25342	-0.00011589	-0.41768	-0.000191	457.2822878256749	43.262	0.30405	44.035	43.826	44.13	0.7724					7	5	2	0	0	0	0.972	1	16060	16060		13.508	7.7475	1	674340	+		53910	23075	39219	39533	52623	52623					0.09072599745559273
TIKQLLLLH	9	Unmodified	_TIKQLLLLH_					0	0	0			REV__ENST00000295851.9_2_2:204281657-204292010:+|nuORF	REV__ENST00000295851.9_2_2:204281657-204292010:+|nuORF	MSMS	A375_MHC_IP_R1	1	360.2304992675781	3	360.237615	1077.69102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.11	1	102.11	101.61	102.61	0								0	0	0	0.15486	1	37521	37521		1.0715	0	1		+		53911	23383	39220	39534	52624	52624					0.15527758679149883
TIKRFNLVLSL	11	Unmodified	_TIKRFNLVLSL_					0	0	0			REV__ENSG00000135763|ENST00000258243|URB2	REV__ENSG00000135763|ENST00000258243|URB2	MULTI-SECPEP	A375_MHC_IP_R1	1	651.6399536132812	2	652.408455	1302.80236	-0.37117	-0.00024215	2.1642	0.0014119	1.793	0.0011698	652.4093481917429	98.799	0.30458	98.799	98.711	99.015	0					6	5	2	0	0	0	0.99676	1	36310	36310		1.1933	1.1933	1	841100	+		53912	18882	39221	39535	52625	52625					0.16306773316409817
TIKRLLAHRS	10	Unmodified	_TIKRLLAHRS_					0	0	0		NPHS2|p.M222I|1|0.27|ENSG00000116218|chr1:179557099-179557099|C/T|missense_variant	NPHS2|p.M222I|1|0.27|ENSG00000116218|chr1:179557099-179557099|C/T|missense_variant	NPHS2|p.M222I|1|0.27|ENSG00000116218|chr1:179557099-179557099|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	399.31878662109375	3	398.919168	1193.73567	0.12126	4.8371E-05	-1.3304	-0.0005307	-1.2091	-0.00048233	398.91875951066464	138.87	0.45149	138.93	138.8	139.25	0.059906					12	8	2	0	0	0	0.94941	1	54454	54454		0.56317	0.40385	1	1889900			53913	15022	39222	39536	52626	52626					0.14655582545174184
TIKRQPTI	8	Unmodified	_TIKRQPTI_					0	0	0			REV__ENSG00000274588|ENST00000611977|DGKK	REV__ENSG00000274588|ENST00000611977|DGKK	MULTI-SECPEP	A375_MHC_IP_R1	1	479.16314697265625	2	478.798009	955.581465	-0.4536	-0.00021718	-1.1857	-0.00056773	-1.6393	-0.00078491	478.7973094407373	59.377	0.65988	59.377	59.092	59.752	0					25	12	3	0	0	0	0.64713	1	21362	21362		43.858	2.0187	1	5786300	+		53914	22958	39223	39537	52627	52627					0.10189753059808027
TIKRQPTI	8	Unmodified	_TIKRQPTI_					0	0	0			REV__ENSG00000274588|ENST00000611977|DGKK	REV__ENSG00000274588|ENST00000611977|DGKK	MULTI-MATCH	A375_MHC_IP_R2	2		2	478.798009	955.581465	-0.86338	-0.00041338	-1.0931	-0.00052336	-1.9564	-0.00093674	478.7973627985913	58.36	0.66311	59.109	58.929	59.592	0.74894	-0.13362	2.3755E-05	NaN	43.858	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7289100	+		53915	22958	39223	39537							0.10189753059808027
TILASQKVKK	10	Unmodified	_TILASQKVKK_					0	0	0		nc|ENSG00000144451|Q8N0X2-2|SPAG16	nc|ENSG00000144451|Q8N0X2-2|SPAG16	nc|ENSG00000144451|Q8N0X2-2|SPAG16	MULTI-MSMS	A375_MHC_IP_R1	1	558.7604370117188	2	558.360973	1114.70739	-0.87395	-0.00048798	0.07975	4.4529E-05	-0.7942	-0.00044345	558.3610264740508	143.45	0.24637	143.45	143.29	143.54	0					8	4	2	0	0	0	0.72358	1	55058	55058		3.5965	0	1	740170			53916	14661	39224	39538	52628	52628					0.15462839845235976
TILCQVQSLQS	11	Unmodified	_TILCQVQSLQS_					0	0	0			REV__CON__Q9D646	REV__CON__Q9D646	MULTI-SECPEP	A375_MHC_IP_R2	2	407.3131408691406	3	407.216551	1218.62782	-0.26898	-0.00010954	1.0882	0.00044311	0.81917	0.00033358	407.55112526748957	24.238	0.2026	24.882	24.755	24.958	0.64368					5	3	2	0	0	0	0.98673	1	7913	7913		5.5233	0	1	1663400	+	+	53917	15835	39225	39539	52629	52629					0.027254051089357745
TILEKCFKV	9	Unmodified	_TILEKCFKV_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-MSMS	A375_MHC_IP_R2	2	361.2754821777344	3	360.875577	1079.6049	-0.36927	-0.00013326	0.35025	0.0001264	-0.01902	-6.8638E-06	360.8756987349261	66.221	0.71479	66.959	66.577	67.292	0.73811					18	13	2	0	0	0	0.48411	1	25089	25089		20.581	7.7083	1	2116200			53918	4671	39226	39540	52630	52630					0.06828430782093164
TILEKCFKV	9	Unmodified	_TILEKCFKV_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-MATCH	A375_MHC_IP_R1	1		3	360.875577	1079.6049	-0.14376	-5.1881E-05	0.10795	3.8955E-05	-0.035818	-1.2926E-05	360.8755358600226	67.117	0.66455	67.117	66.836	67.5	0	0.078928	-0.00011295	NaN	20.581	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1365100			53919	4671	39226	39540							0.06828430782093164
TILFMMLYF	9	Unmodified	_TILFMMLYF_					0	0	0		ENSG00000180340|ENST00000315323|FZD2;ENSG00000157240|ENST00000287934|FZD1	ENSG00000180340|ENST00000315323|FZD2	ENSG00000180340|ENST00000315323|FZD2	MULTI-SECPEP	A375_MHC_IP_R2	2	393.2524108886719	3	393.537797	1177.59156	-0.44777	-0.00017622	0.31178	0.0001227	-0.13599	-5.3517E-05	393.8728506680534	37.52	0.92278	38.291	38.07	38.993	0.7709					40	17	4	0	0	0	0.77003	1	13647	13647		4.5289	0	1	6516800			53920	6234	39227	39541	52631	52631					0.00986856678514414
TILGHYIGI	9	Unmodified	_TILGHYIGI_					0	0	0		ENST00000400585.6_1_22:17978448-17978574:+|nuORF	ENST00000400585.6_1_22:17978448-17978574:+|nuORF	ENST00000400585.6_1_22:17978448-17978574:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	494.16839599609375	2	493.78711	985.559667	-0.78377	-0.00038702	-2.0165	-0.00099571	-2.8003	-0.0013827	493.78649748357583	56.232	0.56185	56.983	56.693	57.255	0.75015					13	10	2	0	0	0	0.56939	1	21296	21296		19.439	2.4967	1	1423100			53921	11556	39228	39542	52632	52632					0.06630948311226348
TILGSIAEV	9	Unmodified	_TILGSIAEV_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	A375_MHC_IP_R1	1	902.5838623046875	1	902.519325	901.512048	0.076976	6.9472E-05	0.4209	0.00037987	0.49787	0.00044934	902.520094452371	107.54	0.66436	107.54	107.29	107.95	0					15	12	2	0	0	0	0.012968	1	39466	39466		92.491	24.411	1	1043500			53922	3357	39229	39543	52633	52633					0.0573524932036662
TILGSIAEV	9	Unmodified	_TILGSIAEV_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-SECPEP	A375_MHC_IP_R2	2	902.9220581054688	1	902.519325	901.512048	-0.46994	-0.00042413	-0.67629	-0.00061036	-1.1462	-0.0010345	902.5193230986273	106.64	0.45807	107.4	107.14	107.6	0.75977					11	8	2	0	0	0	0.053904	1	40287	40287		74.929	9.694	1	1813200			53923	3357	39229	39543	52634	52634					0.0573524932036662
TILKLLEHGL	10	Unmodified	_TILKLLEHGL_					0	0	0		ENST00000340149.6_1_11:77926678-77927026:-|nuORF	ENST00000340149.6_1_11:77926678-77927026:-|nuORF	ENST00000340149.6_1_11:77926678-77927026:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	568.2109985351562	2	568.855524	1135.69649	-0.27042	-0.00015383	4.1902	0.0023836	3.9197	0.0022298	568.8564358302955	92.835	0.2033	93.574	93.443	93.646	0.73902					5	3	2	0	0	0	0.91556	1	35281	35281		10.074	0	1	776450			53924	10854	39230	39544	52635	52635					0.1340743747095985
TILKRLFRV	9	Unmodified	_TILKRLFRV_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000114978|ENST00000396049|MOB1A;ENSG00000173542|ENST00000309395|MOB1B;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	382.9891052246094	3	382.588759	1144.74445	0.37507	0.0001435	0.18598	7.1153E-05	0.56105	0.00021465	382.58878586895065	63.248	1.176	63.248	62.914	64.09	0					40	22	3	0	0	0	0.12748	1	22822	22822		45.74	26.378	1	3648200			53925	3262	39231	39545	52636	52636					0.17786556181636115
TILKRLFRV	9	Unmodified	_TILKRLFRV_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000114978|ENST00000396049|MOB1A;ENSG00000173542|ENST00000309395|MOB1B;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	382.98895263671875	3	382.588759	1144.74445	-0.36625	-0.00014012	0.054107	2.0701E-05	-0.31214	-0.00011942	382.58876689891747	61.862	0.80935	62.605	62.27	63.079	0.74263					36	15	3	0	0	0	0.12748	1	23451	23451		45.74	30.491	1	3628600			53926	3262	39231	39545	52637	52637					0.17786556181636115
TILMKALQ	8	Unmodified	_TILMKALQ_					0	0	0		nc|ENSG00000163046|A7E2S9-2|ANKRD30BL;ENSG00000163046|ENST00000409867|ANKRD30BL	nc|ENSG00000163046|A7E2S9-2|ANKRD30BL	nc|ENSG00000163046|A7E2S9-2|ANKRD30BL	MSMS	A375_MHC_IP_R1	1	459.6792297363281	2	459.278063	916.541574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.99	1	142.99	142.49	143.49	0								0	0	0	0.16876	1	54863	54863		2.5775	0	1				53927	6626	39232	39546	52638	52638					0.07996490064874706
TILNHVLHV	9	Unmodified	_TILNHVLHV_					0	0	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	A375_MHC_IP_R2	2	523.6605224609375	2	523.311284	1044.60801	-0.84982	-0.00044472	1.6273	0.00085157	0.77746	0.00040685	523.311516001883	60.786	0.25364	61.531	61.364	61.618	0.74503					6	4	2	0	0	0	0.71541	1	22970	22970		7.2892	0	1	1515900			53928	5800	39233	39547	52639	52639					0.08749441951113113
TILPKVMQV	9	Unmodified	_TILPKVMQV_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1;ENST00000484386.1_1_15:44097294-44102132:-|nuORF	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	515.2122802734375	2	514.81227	1027.60999	-0.34999	-0.00018018	-3.2357	-0.0016658	-3.5857	-0.001846	515.3110088310585	82.342	0.81214	82.342	82.011	82.823	0					36	15	4	0	0	0	0.24548	1	30133	30133		29.082	0	1	4487800			53929	5130	39234	39548	52640	52640					0.0972873464472741
TILRKSYLL	9	Unmodified	_TILRKSYLL_					0	0	0			REV__nc|ENSG00000197323|Q9UPN9-2|TRIM33	REV__nc|ENSG00000197323|Q9UPN9-2|TRIM33	MULTI-MSMS	A375_MHC_IP_R2	2	369.9691467285156	3	369.569253	1105.68593	-0.22561	-8.3378E-05	0.052142	1.927E-05	-0.17347	-6.4108E-05	369.56923338213124	53.559	0.35797	54.31	54.147	54.505	0.75105					11	6	2	0	0	0	0.72761	1	20261	20261		4.5289	0	1	1816000	+		53930	22278	39235	39549	52641	52641					0.13731454816525002
TILRLLQQV	9	Unmodified	_TILRLLQQV_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A;ENST00000369144.7_1_10:120819204-120820315:-|nuORF	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-SECPEP	A375_MHC_IP_R2	2	542.20263671875	2	542.347866	1082.68118	-0.82598	-0.00044797	0.0026026	1.4115E-06	-0.82338	-0.00044656	542.3478426988968	102.69	0.61067	103.46	103.12	103.74	0.76428					16	11	2	0	0	0	0.46121	1	38936	38936		27.629	16.805	1	951020			53931	2743	39236	39550	52642	52642					0.14314570673764138
TILRSPLI	8	Unmodified	_TILRSPLI_					0	0	0		nc|ENSG00000140832|Q96A59-2|MARVELD3	nc|ENSG00000140832|Q96A59-2|MARVELD3	nc|ENSG00000140832|Q96A59-2|MARVELD3	MULTI-SECPEP	A375_MHC_IP_R2	2	457.1972961425781	2	456.797478	911.580402	-0.41803	-0.00019095	0.18537	8.4675E-05	-0.23266	-0.00010628	456.79752026774423	97.432	0.66103	98.188	97.873	98.534	0.75587					18	12	2	0	0	0	0.77651	1	37000	37000		42.095	0	1	2219600			53932	14644	39237	39551	52643	52643					0.1210753869090695
TILSCNQLTAY	11	Unmodified	_TILSCNQLTAY_					0	0	0			REV__ENSG00000100625|ENST00000216513|SIX4	REV__ENSG00000100625|ENST00000216513|SIX4	MULTI-SECPEP	A375_MHC_IP_R2	2	613.4881591796875	2	613.807913	1225.60127	-0.56604	-0.00034744	-1.3397	-0.00082233	-1.9058	-0.0011698	613.8065872495582	102.37	0.40838	103.14	102.92	103.33	0.76428					12	7	2	0	0	0	0.99331	1	38733	38733		8.7454	0.58988	1	700800	+		53933	17112	39238	39552	52644	52644					-0.002502837824067683
TILTFLRAGKL	11	Unmodified	_TILTFLRAGKL_					0	0	0		nc|ENSG00000026559|Q9UIX4-2|KCNG1;ENSG00000026559|ENST00000371571|KCNG1	nc|ENSG00000026559|Q9UIX4-2|KCNG1	nc|ENSG00000026559|Q9UIX4-2|KCNG1	MULTI-SECPEP	A375_MHC_IP_R2	2	411.3116149902344	3	411.595691	1231.76524	-0.13811	-5.6844E-05	0.12689	5.2229E-05	-0.011212	-4.6148E-06	411.59574666446827	26.96	0.41087	27.619	27.414	27.825	0.65992					11	7	2	0	0	0	0.99681	1	9115	9115		7.0371	2.6309	1	1321700			53934	1095	39239	39553	52645	52645					0.15863101770673893
TILTFLRAGKL	11	Unmodified	_TILTFLRAGKL_					0	0	0		nc|ENSG00000026559|Q9UIX4-2|KCNG1;ENSG00000026559|ENST00000371571|KCNG1	nc|ENSG00000026559|Q9UIX4-2|KCNG1	nc|ENSG00000026559|Q9UIX4-2|KCNG1	MULTI-MATCH	A375_MHC_IP_R1	1		3	411.595691	1231.76524	-0.098813	-4.0671E-05	-0.41176	-0.00016948	-0.51058	-0.00021015	411.59553910101187	27.937	0.30196	27.937	27.786	28.088	0	0.159	-0.00023833	NaN	4.4062	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1134000			53935	1095	39239	39553							0.15863101770673893
TILVSRAHSL	10	Unmodified	_TILVSRAHSL_					0	0	0			REV__nc|ENSG00000133943|Q7Z3D6-5|DGLUCY	REV__nc|ENSG00000133943|Q7Z3D6-5|DGLUCY	MULTI-SECPEP	A375_MHC_IP_R2	2	366.6041259765625	3	366.220624	1095.64004	-0.11757	-4.3057E-05	-0.13486	-4.939E-05	-0.25244	-9.2447E-05	366.2205566466791	34.787	0.35275	35.55	35.425	35.778	0.76338					11	6	2	0	0	0	0.89761	1	12586	12586		7.4771	0	1	997640	+		53936	18741	39240	39554	52646	52646					0.09604809634288358
TILVVIYPLV	10	Unmodified	_TILVVIYPLV_					0	0	0			REV__tr|U7SUD7|U7SUD7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01195PE=3SV=1	REV__tr|U7SUD7|U7SUD7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01195PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	377.28057861328125	3	377.245888	1128.71583	0.32522	0.00012269	0.022036	8.3129E-06	0.34725	0.000131	377.2446381121443	46.345	0.20029	46.345	46.195	46.395	0					5	3	2	0	0	0	0.71245	1	16250	16250		3.5871	0.26742	1	336890	+		53937	28548	39241	39555	52647	52647					0.1566239376181784
TIMPKDIQL	9	Unmodified	_TIMPKDIQL_					0	0	0		nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000197153|ENST00000359303|H3C12;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000203852|ENST00000403683|H3C15;ENSG00000203811|ENST00000369158|H3C14;ENSG00000273983|ENST00000614378|H3C8;ENSG00000183598|ENST00000331491|H3C13;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000168148|ENST00000366696|H3-4;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000197409|ENST00000356476|H3C4;ENSG00000188375|ENST00000340398|H3-5;ENST00000593254.1_1_17:73774678-73775846:-|nuORF;ENST00000404612.1_1_6:26322106-26322214:-|nuORF	nc|ENSG00000273213|Q5TEC6|H3-7	nc|ENSG00000273213|Q5TEC6|H3-7	MULTI-SECPEP	A375_MHC_IP_R1	1	530.1990966796875	2	529.79936	1057.58417	-0.58046	-0.00030753	-0.16544	-8.7651E-05	-0.7459	-0.00039518	529.7994761514818	77.402	0.7617	77.402	77.032	77.793	0					26	14	3	0	0	0	0.11849	1	28223	28223		53.404	19.002	1	4288200			53938	14936	39242	39556	52648	52648					0.057678404024500196
TIMPKDIQL	9	Unmodified	_TIMPKDIQL_					0	0	0		nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000197153|ENST00000359303|H3C12;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000203852|ENST00000403683|H3C15;ENSG00000203811|ENST00000369158|H3C14;ENSG00000273983|ENST00000614378|H3C8;ENSG00000183598|ENST00000331491|H3C13;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000168148|ENST00000366696|H3-4;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000197409|ENST00000356476|H3C4;ENSG00000188375|ENST00000340398|H3-5;ENST00000593254.1_1_17:73774678-73775846:-|nuORF;ENST00000404612.1_1_6:26322106-26322214:-|nuORF	nc|ENSG00000273213|Q5TEC6|H3-7	nc|ENSG00000273213|Q5TEC6|H3-7	MULTI-SECPEP	A375_MHC_IP_R2	2	530.1991577148438	2	529.79936	1057.58417	-0.58113	-0.00030788	-0.45847	-0.0002429	-1.0396	-0.00055078	529.7991997701511	76.506	0.66129	77.246	76.994	77.655	0.74052					24	12	3	0	0	0	0.11849	1	29043	29043		61.602	17.744	1	3641700			53939	14936	39242	39556	52649	52649					0.057678404024500196
TIMSGLVTIY	10	Unmodified	_TIMSGLVTIY_					0	0	0		tr|U7SKZ6|U7SKZ6_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02005PE=3SV=1	tr|U7SKZ6|U7SKZ6_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02005PE=3SV=1	tr|U7SKZ6|U7SKZ6_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02005PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	548.7059936523438	2	549.299193	1096.58383	-1.1862	-0.00065156	0.025144	1.3811E-05	-1.161	-0.00063775	549.8002759449427	57.137	0.25738	57.887	57.712	57.969	0.75014					6	4	2	0	0	0	0.69172	1	21594	21594		19.257	0	1	501190			53940	29488	39243	39557	52650	52650					0.03940420682602053
TIMTGVIGV	9	Unmodified	_TIMTGVIGV_					0	0	0		nc|ENSG00000182557|Q6ZMD2-2|SPNS3;ENSG00000182557|ENST00000355530|SPNS3	nc|ENSG00000182557|Q6ZMD2-2|SPNS3	nc|ENSG00000182557|Q6ZMD2-2|SPNS3	MULTI-SECPEP	A375_MHC_IP_R1	1	446.1529541015625	2	445.754421	889.494289	0.012005	5.3513E-06	1.8328	0.00081698	1.8448	0.00082233	445.75270416846917	63.273	1.2812	63.273	62.505	63.786	0					32	24	2	0	0	0	0.47368	1	22824	22824		20.454	0	1	4920200			53941	8418	39244	39558	52651	52651					0.045122107938937006
TINDIVHVV	9	Unmodified	_TINDIVHVV_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30;DHX30|p.S1163Qfs*25|1|0.5|ENSG00000132153|chr3:47850015-47850016|-/C|frameshift_variant;ENST00000474183.1_1_3:47889269-47889497:+|nuORF	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	A375_MHC_IP_R1	1	505.68695068359375	2	505.287474	1008.5604	-0.4275	-0.00021601	-0.6352	-0.00032096	-1.0627	-0.00053697	505.2871088554172	77.006	0.71069	77.006	76.776	77.486	0					23	13	2	0	0	0	0.11296	1	28111	28111		48.346	14.243	1	2780900			53942	4375	39245	39559	52652	52652					0.05645742960280131
TINDIVHVV	9	Unmodified	_TINDIVHVV_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30;DHX30|p.S1163Qfs*25|1|0.5|ENSG00000132153|chr3:47850015-47850016|-/C|frameshift_variant;ENST00000474183.1_1_3:47889269-47889497:+|nuORF	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-SECPEP	A375_MHC_IP_R2	2	505.686767578125	2	505.287474	1008.5604	-0.69216	-0.00034974	-0.4284	-0.00021647	-1.1206	-0.00056621	505.28704528000804	76.214	0.91273	76.955	76.538	77.451	0.74052					28	17	2	0	0	0	0.47368	1	28943	28943		26.884	11.036	1	3204900			53943	4375	39245	39559	52653	52653					0.05645742960280131
TINENKDW	8	Unmodified	_TINENKDW_					0	0	0			REV__tr|U7SNJ0|U7SNJ0_FUSNUPhosphoglucosaminemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmMPE=3SV=1	REV__tr|U7SNJ0|U7SNJ0_FUSNUPhosphoglucosaminemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmMPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	510.1742248535156	2	510.243264	1018.47197	-0.66908	-0.00034139	0.77729	0.00039661	0.10821	5.5215E-05	510.2437649218278	89.109	0.39973	89.841	89.635	90.035	0.7318					10	7	2	0	0	0	0.71451	1	33857	33857		30.225	0	1	621500	+		53944	28330	39246	39560	52654	52654					-0.03652297350186018
TINEVWDEI	9	Unmodified	_TINEVWDEI_					0	0	0		tr|U7T272|U7T272_FUSNUHemolysinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00572PE=4SV=1	tr|U7T272|U7T272_FUSNUHemolysinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00572PE=4SV=1	tr|U7T272|U7T272_FUSNUHemolysinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00572PE=4SV=1	MSMS	A375_MHC_IP_R1	1	559.716796875	2	559.771854	1117.52915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.91	1	79.91	79.41	80.41	0								0	0	0	0.1499	1	29172	29172		21.747	1.293	1				53945	29921	39247	39561	52655	52655					-0.024908748644747902
TINKVLLQY	9	Unmodified	_TINKVLLQY_					0	0	0		ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	MULTI-SECPEP	A375_MHC_IP_R1	1	545.7005615234375	2	546.326599	1090.63865	-0.59116	-0.00032297	-0.3033	-0.0001657	-0.89446	-0.00048867	546.3264917238264	58.929	0.71236	58.929	58.633	59.346	0					27	13	3	0	0	0	0.72623	1	21321	21321		13.906	2.4113	1	8323700			53946	4911	39248	39562	52656	52656					0.09695175545539314
TINLSKPEKD	10	Unmodified	_TINLSKPEKD_					0	0	0		tr|U7SZZ9|U7SZZ9_FUSNUGalactose-1-phosphateuridylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=galTPE=3SV=1	tr|U7SZZ9|U7SZZ9_FUSNUGalactose-1-phosphateuridylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=galTPE=3SV=1	tr|U7SZZ9|U7SZZ9_FUSNUGalactose-1-phosphateuridylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=galTPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	573.2144165039062	2	572.814053	1143.61355	-0.13351	-7.6477E-05	0.18819	0.0001078	0.05468	3.1322E-05	572.8142142241542	68.895	0.40456	68.895	68.565	68.969	0					9	7	2	0	0	0	0.91442	1	25013	25013		11.495	5.2889	1	1570100			53947	29873	39249	39563	52657	52657					0.047490759522816006
TINNCFDTF	9	Unmodified	_TINNCFDTF_					0	0	0			REV__nc|ENSG00000123612|Q8NER5-2|ACVR1C	REV__nc|ENSG00000123612|Q8NER5-2|ACVR1C	MSMS	A375_MHC_IP_R1	1	537.7081909179688	2	537.731674	1073.4488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.129	1	62.129	61.629	62.629	0								0	0	0	0.15486	1	22427	22427		7.9102	0.62092	1		+		53948	18254	39250	39564	52658	52658					-0.0849905945917726
TINPTDGSVI	10	Unmodified	_TINPTDGSVI_					0	0	0		nc|ENSG00000144908|O75891-4|ALDH1L1;ENST00000473607.5_1_3:125854214-125879740:-|nuORF;nc|ENSG00000144908|O75891-2|ALDH1L1;ENSG00000144908|ENST00000393434|ALDH1L1;nc|ENSG00000144908|O75891-3|ALDH1L1	nc|ENSG00000144908|O75891-4|ALDH1L1	nc|ENSG00000144908|O75891-4|ALDH1L1	MULTI-SECPEP	A375_MHC_IP_R2	2	509.0072326660156	2	508.766571	1015.51859	-0.65213	-0.00033178	-0.13033	-6.6307E-05	-0.78246	-0.00039809	508.76641397547894	133.97	0.40903	134.13	133.96	134.37	0.16487					12	7	2	0	0	0	0.91556	1	52771	52771		6.2058	0	1	9220100			53949	5528	39251	39565	52659	52659					0.011451424810957178
TINQLTITSCN	11	Unmodified	_TINQLTITSCN_					0	0	0			REV__ENSG00000173402|ENST00000308775|DAG1	REV__ENSG00000173402|ENST00000308775|DAG1	MULTI-SECPEP	A375_MHC_IP_R2	2	402.6153869628906	3	403.204422	1206.59144	0.078275	3.1561E-05	1.4996	0.00060466	1.5779	0.00063622	403.2048685406497	42.42	0.35581	43.193	43.014	43.369	0.7724					8	6	2	0	0	0	0.97182	1	15722	15722		7.846	0	1	1426400	+		53950	21218	39252	39566	52660	52660					-0.0035947178776041255
TINTAPFQAM	10	Unmodified	_TINTAPFQAM_					0	0	0		nc|ENSG00000110888|Q6IMN6|CAPRIN2;nc|ENSG00000110888|Q6IMN6-9|CAPRIN2;ENSG00000110888|ENST00000695402|CAPRIN2;nc|ENSG00000110888|Q6IMN6-3|CAPRIN2;nc|ENSG00000110888|Q6IMN6-7|CAPRIN2;nc|ENSG00000110888|Q6IMN6-10|CAPRIN2;ENST00000548676.5_1_12:30862838-30884436:-|nuORF;ENST00000454014.6_1_12:30862838-30884436:-|nuORF;nc|ENSG00000110888|Q6IMN6-4|CAPRIN2	nc|ENSG00000110888|Q6IMN6|CAPRIN2	nc|ENSG00000110888|Q6IMN6|CAPRIN2	MSMS	A375_MHC_IP_R1	1	547.18896484375	2	547.270967	1092.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.66	1	64.66	64.16	65.16	0								0	0	0	0.14925	1	23400	23400		19.257	1.1106	1				53951	2955	39253	39567	52661	52661					-0.015182071540948527
TINTAPFQAM	10	Unmodified	_TINTAPFQAM_					0	0	0		nc|ENSG00000110888|Q6IMN6|CAPRIN2;nc|ENSG00000110888|Q6IMN6-9|CAPRIN2;ENSG00000110888|ENST00000695402|CAPRIN2;nc|ENSG00000110888|Q6IMN6-3|CAPRIN2;nc|ENSG00000110888|Q6IMN6-7|CAPRIN2;nc|ENSG00000110888|Q6IMN6-10|CAPRIN2;ENST00000548676.5_1_12:30862838-30884436:-|nuORF;ENST00000454014.6_1_12:30862838-30884436:-|nuORF;nc|ENSG00000110888|Q6IMN6-4|CAPRIN2	nc|ENSG00000110888|Q6IMN6|CAPRIN2	nc|ENSG00000110888|Q6IMN6|CAPRIN2	MULTI-MSMS	A375_MHC_IP_R2	2	547.1694946289062	2	547.270967	1092.52738	-0.73101	-0.00040006	-0.42999	-0.00023532	-1.161	-0.00063538	547.2708006951452	63.471	0.61069	64.212	63.936	64.547	0.74022					23	11	3	0	0	0	0.69306	1	24185	24185		13.906	1.3745	1	5969900			53952	2955	39253	39567	52662	52662					-0.015182071540948527
TINWFAKWF	9	Unmodified	_TINWFAKWF_					0	0	0			REV__nc|ENSG00000079435|Q05469-2|LIPE	REV__nc|ENSG00000079435|Q05469-2|LIPE	MSMS	A375_MHC_IP_R2	2	404.94403076171875	3	404.878198	1211.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.495	1	46.26	45.76	46.76	0.76519								0	0	0	0.15486	1	17009	17009		5.7834	0	1		+		53953	16733	39254	39568	52663	52663					0.015423260938632666
TINWNGTVPF	10	Unmodified	_TINWNGTVPF_					0	0	0		ENSG00000214237|ENST00000465419|MINDY4B	ENSG00000214237|ENST00000465419|MINDY4B	ENSG00000214237|ENST00000465419|MINDY4B	MULTI-SECPEP	A375_MHC_IP_R1	1	575.19091796875	2	574.790381	1147.56621	-0.35485	-0.00020397	0.25606	0.00014718	-0.098793	-5.6785E-05	574.7906943844756	94.879	0.66118	94.879	94.651	95.312	0					14	12	2	0	0	0	0.63381	1	34884	34884		19.362	0	1	1596900			53954	9609	39255	39569	52664	52664					-0.001671585280519139
TIPFKDKI	8	Unmodified	_TIPFKDKI_					0	0	0		ENSG00000111364|ENST00000238146|DDX55;nc|ENSG00000111364|Q8NHQ9-2|DDX55	ENSG00000111364|ENST00000238146|DDX55	ENSG00000111364|ENST00000238146|DDX55	MULTI-MSMS	A375_MHC_IP_R2	2	482.6660461425781	2	481.289485	960.564418	-0.4787	-0.00023039	0.4603	0.00022154	-0.018399	-8.8553E-06	481.2897039312179	79.074	1.6254	79.818	78.982	80.607	0.74474					79	31	4	0	0	0	0.76654	1	30191	30191		15.847	0	1	28787000			53955	2989	39256	39570	52665	52665					0.08255832453994572
TIPIAFKIL	9	Unmodified	_TIPIAFKIL_					0	0	0			REV__tr|U7SSQ6|U7SSQ6_FUSNUDUF5673domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01454PE=4SV=1	REV__tr|U7SSQ6|U7SSQ6_FUSNUDUF5673domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01454PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	507.98046875	2	508.331153	1014.64775	-0.29219	-0.00014853	1.5826	0.00080447	1.2904	0.00065594	508.3314494049398	51.398	0.76048	51.398	50.864	51.625	0					22	14	3	0	0	0	0.62767	1	18205	18205		16.942	9.0321	1	1976600	+		53956	28441	39257	39571	52666	52666					0.141015689018559
TIPLAICISM	10	Unmodified	_TIPLAICISM_					0	0	0		ENSG00000151012|ENST00000280612|SLC7A11	ENSG00000151012|ENST00000280612|SLC7A11	ENSG00000151012|ENST00000280612|SLC7A11	MULTI-SECPEP	A375_MHC_IP_R1	1	531.6328125	2	531.290314	1060.56607	-0.5685	-0.00030204	0.41497	0.00022047	-0.15353	-8.1571E-05	531.2902531914897	104.36	0.76133	104.36	104.13	104.89	0					29	14	3	0	0	0	0.72086	1	38309	38309		24.021	24.021	1	2707800			53957	5874	39258	39572	52667	52667					0.038213821560702854
TIPMEEKFV	9	Unmodified	_TIPMEEKFV_					0	0	0			REV__nc|ENSG00000243335|Q96MP8-2|KCTD7	REV__nc|ENSG00000243335|Q96MP8-2|KCTD7	MULTI-SECPEP	A375_MHC_IP_R2	2	546.9131469726562	2	547.283543	1092.55253	-0.76975	-0.00042127	0.18187	9.9534E-05	-0.58788	-0.00032174	547.2833841901896	83.056	1.2696	83.795	83.393	84.663	0.73962					44	24	3	0	0	0	0.58271	1	31607	31607		26.884	6.43	1	5619200	+		53958	22808	39259	39573	52668	52668					0.009958476484825951
TIPNAFRYLFY	11	Unmodified	_TIPNAFRYLFY_					0	0	0			REV__tr|U7T296|U7T296_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00517PE=3SV=1	REV__tr|U7T296|U7T296_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00517PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	703.2679443359375	2	702.869163	1403.72377	-0.54264	-0.00038141	-0.79739	-0.00056046	-1.34	-0.00094186	702.8687213437877	85.797	1.0181	86.533	86.085	87.103	0.73602					60	19	4	0	0	0	0.67989	1	32782	32782		17.113	2.7075	1	29530000	+		53959	28727	39260	39574	52669	52669					0.03805921011326063
TIPNHKEQEW	10	Unmodified	_TIPNHKEQEW_					0	0	0		ENSG00000077274|ENST00000324068|CAPN6	ENSG00000077274|ENST00000324068|CAPN6	ENSG00000077274|ENST00000324068|CAPN6	MULTI-SECPEP	A375_MHC_IP_R1	1	428.176513671875	3	427.878926	1280.61495	-0.048468	-2.0738E-05	2.9338	0.0012553	2.8853	0.0012346	427.8788524004244	56.003	1.1679	56.003	55.431	56.599	0					76	22	5	0	0	0	0.93615	1	20258	20258		1.9064	0.1641	1	11301000			53960	1652	39261	39575	52670	52670					-0.014132899589412773
TIPPPTLGV	9	Unmodified	_TIPPPTLGV_					0	0	0		nc|ENSG00000112941|Q5XG87-2|TENT4A;ENSG00000112941|ENST00000230859|TENT4A;ENST00000514697.1_1_5:6746314-6755055:+|nuORF	nc|ENSG00000112941|Q5XG87-2|TENT4A	nc|ENSG00000112941|Q5XG87-2|TENT4A	MULTI-SECPEP	A375_MHC_IP_R1	1	448.16815185546875	2	447.768386	893.522219	-0.29783	-0.00013336	-0.070405	-3.1525E-05	-0.36823	-0.00016488	447.7682835390513	86.096	2.1802	86.096	85.005	87.186	0					74	42	2	0	0	0	0.030624	1	31564	31564		100.37	36.135	1	4053200			53961	3119	39262	39576	52671	52671					0.07119857045631761
TIPPPTLGV	9	Unmodified	_TIPPPTLGV_					0	0	0		nc|ENSG00000112941|Q5XG87-2|TENT4A;ENSG00000112941|ENST00000230859|TENT4A;ENST00000514697.1_1_5:6746314-6755055:+|nuORF	nc|ENSG00000112941|Q5XG87-2|TENT4A	nc|ENSG00000112941|Q5XG87-2|TENT4A	MULTI-MSMS	A375_MHC_IP_R2	2	447.7469482421875	2	447.768386	893.522219	-0.19038	-8.5245E-05	-0.25016	-0.00011202	-0.44054	-0.00019726	447.7681993496452	85.272	2.3418	86.008	85.018	87.36	0.73602					77	45	2	0	0	0	0.4867	1	32770	32770		20.454	5.6154	1	2769600			53962	3119	39262	39576	52672	52672					0.07119857045631761
TIPQLSSRPF	10	Unmodified	_TIPQLSSRPF_					0	0	0			REV__nc|ENSG00000112655|Q13308-3|PTK7	REV__nc|ENSG00000112655|Q13308-3|PTK7	MULTI-SECPEP	A375_MHC_IP_R1	1	383.3043212890625	3	382.548629	1144.62406	0.82329	0.00031495	-0.52713	-0.00020165	0.29617	0.0001133	382.5483953870925	49.2	1.2156	49.2	48.426	49.642	0					58	23	4	0	0	0	0.8125	1	17090	17090		15.739	9.1152	1	28898000	+		53963	17744	39263	39577	52673	52673					0.05753103397364612
TIPYDGTV	8	Unmodified	_TIPYDGTV_					0	0	0			REV__ATP1A4|p.H626Y|1|0.09|ENSG00000132681|chr1:160173602-160173602|C/T|missense_variant	REV__ATP1A4|p.H626Y|1|0.09|ENSG00000132681|chr1:160173602-160173602|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	433.28515625	2	433.218726	864.422899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.56	1	107.32	106.82	107.82	0.75977								0	0	0	0.16876	1	40276	40276		9.3474	0	1		+		53964	15476	39264	39578	52674	52674					-0.014735856391325797
TIQFKLEKI	9	Unmodified	_TIQFKLEKI_					0	0	0		ENSG00000048707|ENST00000620676|VPS13D;nc|ENSG00000048707|Q5THJ4-2|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	MULTI-MSMS	A375_MHC_IP_R2	2	373.95703125	3	373.897258	1118.66995	-0.26007	-9.724E-05	-0.13189	-4.9312E-05	-0.39196	-0.00014655	373.89720046038303	28.565	1.5075	29.264	29.08	30.588	0.69872					67	29	4	0	0	0	0.70307	1	10408	10408		4.1895	0.31317	1	133500000			53965	1216	39265	39579	52675	52675					0.11535748579603933
TIQKTTLV	8	Unmodified	_TIQKTTLV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R1	1	452.6791687011719	2	452.279118	902.543683	0.13606	6.1539E-05	-0.39702	-0.00017956	-0.26096	-0.00011803	452.27883633540296	49.59	0.50897	49.59	49.387	49.896	0					16	9	2	0	0	0	0.7011	1	17557	17557		34.402	3.1334	1	2569400			53966	6151;14694	39266	39580	52676	52676					0.08851242074319998
TIQKTTLV	8	Unmodified	_TIQKTTLV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R2	2	452.6788330078125	2	452.279118	902.543683	-0.32012	-0.00014478	-0.64488	-0.00029166	-0.96499	-0.00043645	452.2787395620475	48.718	0.50997	49.476	49.18	49.69	0.75737					17	9	3	0	0	0	0.74945	1	18317	18317		20.454	0	1	2628200			53967	6151;14694	39266	39580	52677	52677					0.08851242074319998
TIQMLEQAKL	10	Unmodified	_TIQMLEQAKL_					0	0	0		nc|ENSG00000196535|Q92614-5|MYO18A;nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A	nc|ENSG00000196535|Q92614-5|MYO18A	nc|ENSG00000196535|Q92614-5|MYO18A	MULTI-SECPEP	A375_MHC_IP_R1	1	587.1256713867188	2	587.828649	1173.64274	-0.092651	-5.4463E-05	0.65287	0.00038378	0.56022	0.00032931	588.3305565927192	109.91	1.0181	109.91	109.27	110.29	0					35	19	2	0	0	0	0.8125	1	40114	40114		18.146	0	1	1854900			53968	9054	39267	39581	52678	52678					0.06286896976916978
TIQMVRSQR	9	Unmodified	_TIQMVRSQR_					0	0	0		nc|ENSG00000179295|Q06124-1|PTPN11;ENSG00000179295|ENST00000351677|PTPN11	nc|ENSG00000179295|Q06124-1|PTPN11	nc|ENSG00000179295|Q06124-1|PTPN11	MULTI-SECPEP	A375_MHC_IP_R1	1	374.2639465332031	3	373.54148	1117.60261	0.36799	0.00013746	0.060236	2.2501E-05	0.42823	0.00015996	373.54105104381523	40.33	0.56032	40.33	39.999	40.559	0					17	10	3	0	0	0	0.58271	1	13745	13745		19.362	9.288	1	2565300			53969	8219	39268	39582	52679	52679					0.04851395097011846
TIQMVRSQR	9	Unmodified	_TIQMVRSQR_					0	0	0		nc|ENSG00000179295|Q06124-1|PTPN11;ENSG00000179295|ENST00000351677|PTPN11	nc|ENSG00000179295|Q06124-1|PTPN11	nc|ENSG00000179295|Q06124-1|PTPN11	MULTI-SECPEP	A375_MHC_IP_R2	2	373.9295654296875	3	373.54148	1117.60261	0.33567	0.00012539	-0.19449	-7.2652E-05	0.14117	5.2735E-05	373.8761334570832	39.547	0.91742	40.321	39.708	40.626	0.77451					25	17	3	0	0	0	0.67483	1	14494	14494		10.151	9.0791	1	2282100			53970	8219	39268	39582	52680	52680					0.04851395097011846
TIQNERTY	8	Unmodified	_TIQNERTY_					0	0	0		nc|ENSG00000112782|Q9NZA1|CLIC5	nc|ENSG00000112782|Q9NZA1|CLIC5	nc|ENSG00000112782|Q9NZA1|CLIC5	MSMS	A375_MHC_IP_R2	2	512.6533813476562	2	512.756538	1023.49852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.747	1	58.496	57.996	58.996	0.74894								0	0	0	0.16876	1	21837	21837		18.135	2.2878	1				53971	14552	39269	39583	52681	52681					-0.012286084588708945
TIQPQGMRQFY	11	Unmodified	_TIQPQGMRQFY_					0	0	0			REV__ENSG00000266714|ENST00000645453|MYO15B	REV__ENSG00000266714|ENST00000645453|MYO15B	MULTI-SECPEP	A375_MHC_IP_R1	1	685.2393188476562	2	684.840079	1367.66561	-0.37038	-0.00025365	-0.79882	-0.00054707	-1.1692	-0.00080072	685.3410236022528	108.76	1.3188	108.76	108.15	109.47	0					55	25	3	0	0	0	0.99331	1	39780	39780		8.7454	0	1	4565500	+		53972	22927	39270	39584	52682	52682					-0.003520839055909164
TIQSICNDY	9	Unmodified	_TIQSICNDY_					0	0	0			REV__ENSG00000178125|ENST00000685739|PPP1R42	REV__ENSG00000178125|ENST00000685739|PPP1R42	MULTI-MSMS	A375_MHC_IP_R2	2	529.70556640625	2	528.736957	1055.45936	-0.54575	-0.00028856	-0.39786	-0.00021036	-0.94361	-0.00049892	528.7369766800289	76.777	1.5252	77.517	77.199	78.724	0.74052					83	29	4	0	0	0	0.64808	1	29482	29482		11.64	3.047	1	9175100	+		53973	21488	39271	39585	52683	52683					-0.06615076804746423
TIQTIALITY	10	Unmodified	_TIQTIALITY_					0	0	0		SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant;nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;SMARCA4|p.K785R|1|0.29|ENSG00000127616|chr19:11013028-11013028|A/G|missense_variant;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;ENST00000592604.5_1_19:11123597-11172489:+|nuORF	SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant;nc|ENSG00000127616|P51532-5|SMARCA4	SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	379.9571228027344	3	379.556902	1135.64888	0.31508	0.00011959	0.029449	1.1178E-05	0.34453	0.00013077	379.5568079205315	43.898	0.45826	43.898	43.655	44.113	0					18	8	3	0	0	0	0.61662	1	15287	15287		19.626	0	1	5411100			53974	1714;4100	39272	39586	52684	52684					0.08647738480090084
TIQVLHKKKIW	11	Unmodified	_TIQVLHKKKIW_					0	0	0			REV__ENSG00000122033|ENST00000381120|MTIF3	REV__ENSG00000122033|ENST00000381120|MTIF3	MSMS	A375_MHC_IP_R1	1	697.7554321289062	2	697.437547	1392.86054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.358	1	90.358	89.858	90.858	0								0	0	0	0.16297	1	33206	33206		3.2813	1.9518	1		+		53975	18184	39273	39587	52685	52685					0.17982454961702388
TIQYCGSLSL	10	Unmodified	_TIQYCGSLSL_					0	0	0			REV__nc|ENSG00000118564|Q9UKA1-2|FBXL5	REV__nc|ENSG00000118564|Q9UKA1-2|FBXL5	MSMS	A375_MHC_IP_R2	2	542.6618041992188	2	542.7708	1083.52705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.1	1	102.87	102.37	103.37	0.76428								0	0	0	0.15105	1	38694	38694		15.847	3.3156	1		+		53976	18048	39274	39588	52686	52686					-0.011376268739240913
TIRDPLLL	8	Unmodified	_TIRDPLLL_					0	0	0		ENST00000459931.1_1_1:36023779-36023974:+|nuORF	ENST00000459931.1_1_1:36023779-36023974:+|nuORF	ENST00000459931.1_1_1:36023779-36023974:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	471.1947021484375	2	470.794935	939.575317	-0.56767	-0.00026725	0.058286	2.7441E-05	-0.50938	-0.00023981	470.7948954444581	86.549	1.0648	86.549	86.172	87.237	0					42	20	3	0	0	0	0.37815	1	31685	31685		71.922	9.3496	1	9235500			53977	12159	39275	39589	52687	52687					0.10311234828293436
TIRDPLLL	8	Unmodified	_TIRDPLLL_					0	0	0		ENST00000459931.1_1_1:36023779-36023974:+|nuORF	ENST00000459931.1_1_1:36023779-36023974:+|nuORF	ENST00000459931.1_1_1:36023779-36023974:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	471.19464111328125	2	470.794935	939.575317	-0.42977	-0.00020233	-0.17294	-8.1421E-05	-0.60271	-0.00028375	470.79485489632106	85.528	1.3754	86.264	85.831	87.206	0.73601					47	26	3	0	0	0	0.55873	1	32437	32437		58.679	0	1	9100500			53978	12159	39275	39589	52688	52688					0.10311234828293436
TIRIKTFSEV	10	Unmodified	_TIRIKTFSEV_					0	0	0		ZC3H11A|p.K414Nfs*21|1|0.14|ENSG00000058673|chr1:203847376-203847376|A/-|frameshift_variant;ENSG00000058673|ENST00000367210|ZC3H11A;nc|ENSG00000214558|P0DQW0|ZC3H11C;ENSG00000215817|ENST00000651890|ZC3H11B	ZC3H11A|p.K414Nfs*21|1|0.14|ENSG00000058673|chr1:203847376-203847376|A/-|frameshift_variant	ZC3H11A|p.K414Nfs*21|1|0.14|ENSG00000058673|chr1:203847376-203847376|A/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	597.3455200195312	2	597.348063	1192.68157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.52	1	114.23	113.73	114.73	0.70985								0	0	0	0.15308	1	42803	42803		10.824	0	1				53979	1296	39276	39590	52689	52689					0.0929394560291712
TIRIYFLRLFL	11	Unmodified	_TIRIYFLRLFL_					0	0	0		TMC7|p.S360F|1|0.46|ENSG00000170537|chr16:19037947-19037947|C/T|missense_variant	TMC7|p.S360F|1|0.46|ENSG00000170537|chr16:19037947-19037947|C/T|missense_variant	TMC7|p.S360F|1|0.46|ENSG00000170537|chr16:19037947-19037947|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	486.1412658691406	3	485.634257	1453.88094	-0.42179	-0.00020484	-2.9074	-0.0014119	-3.3292	-0.0016168	485.6325507324885	47.251	0.20475	48.012	47.919	48.123	0.76128					5	3	2	0	0	0	1.0002	1	17717	17717		1.3296	0.31607	1	1286200			53980	29357	39277	39591	52690	52690					0.17215625621497566
TIRKWDVLT	9	Unmodified	_TIRKWDVLT_					0	0	0		WDR86|p.R81K|1|0.35|ENSG00000187260|chr7:151400163-151400163|C/T|missense_variant	WDR86|p.R81K|1|0.35|ENSG00000187260|chr7:151400163-151400163|C/T|missense_variant	WDR86|p.R81K|1|0.35|ENSG00000187260|chr7:151400163-151400163|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	378.26092529296875	3	377.888874	1130.64479	-0.37083	-0.00014013	0.86072	0.00032526	0.48988	0.00018512	377.88910800434104	33.847	0.45505	34.599	34.298	34.753	0.75225					13	8	2	0	0	0	0.69317	1	12218	12218		7.609	0	1	1724200			53981	30161	39278	39592	52691	52691					0.08469693777033172
TIRQIIQKI	9	Unmodified	_TIRQIIQKI_					0	0	0			REV__nc|ENSG00000133059|Q6XUX3-2|DSTYK	REV__nc|ENSG00000133059|Q6XUX3-2|DSTYK	MULTI-MSMS	A375_MHC_IP_R1	1	371.9764709472656	3	371.576519	1111.70773	-0.041259	-1.5331E-05	-0.019154	-7.1171E-06	-0.060413	-2.2448E-05	371.5764144172434	29.655	2.5184	29.655	29.098	31.616	0					123	49	4	0	0	0	0.068433	1	9509	9509		57.108	1.8729	1	98515000	+		53982	18702	39279	39593	52692	52692					0.15634259565081265
TIRRNYIYE	9	Unmodified	_TIRRNYIYE_					0	0	0		ENST00000470408.5_1_7:157015856-157060446:+|nuORF;ENSG00000009335|ENST00000348165|UBE3C	ENST00000470408.5_1_7:157015856-157060446:+|nuORF	ENST00000470408.5_1_7:157015856-157060446:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	409.6044921875	3	409.887533	1226.64077	0.23034	9.4414E-05	-0.49729	-0.00020383	-0.26695	-0.00010942	410.2216878359618	48.096	0.35347	48.096	47.819	48.173	0					9	6	2	0	0	0	0.78719	1	16841	16841		5.7834	2.4638	1	1440600			53983	967	39280	39594	52693	52693					0.0365160428332274
TIRRNYIYE	9	Unmodified	_TIRRNYIYE_					0	0	0		ENST00000470408.5_1_7:157015856-157060446:+|nuORF;ENSG00000009335|ENST00000348165|UBE3C	ENST00000470408.5_1_7:157015856-157060446:+|nuORF	ENST00000470408.5_1_7:157015856-157060446:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	409.887533	1226.64077	0.20429	8.3734E-05	0.38842	0.00015921	0.59271	0.00024294	409.88751948711297	47.235	0.45928	47.996	47.664	48.123	0.76128	-0.049887	0.00077978	NaN	5.7834	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1673600			53984	967	39280	39594							0.0365160428332274
TIRRYEPGF	9	Unmodified	_TIRRYEPGF_					0	0	0			REV__nc|ENSG00000159164|Q7L0J3-2|SV2A	REV__nc|ENSG00000159164|Q7L0J3-2|SV2A	MULTI-SECPEP	A375_MHC_IP_R1	1	380.6050720214844	3	380.204974	1137.59309	0.47949	0.0001823	0.14329	5.4481E-05	0.62278	0.00023679	380.20484381888457	54.348	0.55703	54.348	54.113	54.67	0					24	10	3	0	0	0	0.74169	1	19423	19423		11.495	1.3441	1	3949200	+		53985	20101	39281	39595	52694	52694					0.029799500831359182
TIRRYEPGF	9	Unmodified	_TIRRYEPGF_					0	0	0			REV__nc|ENSG00000159164|Q7L0J3-2|SV2A	REV__nc|ENSG00000159164|Q7L0J3-2|SV2A	MULTI-MATCH	A375_MHC_IP_R2	2		3	380.204974	1137.59309	-0.55017	-0.00020918	0.89842	0.00034158	0.34825	0.00013241	380.2051406318475	53.408	0.5614	54.159	53.893	54.454	0.75105	-0.09447	0.00044237	NaN	11.495	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3993300	+		53986	20101	39281	39595							0.029799500831359182
TIRSQINN	8	Unmodified	_TIRSQINN_					0	0	0			REV__ENST00000487115.1_1_7:99707771-99708935:-|nuORF	REV__ENST00000487115.1_1_7:99707771-99708935:-|nuORF	MSMS	A375_MHC_IP_R1	1	473.1897888183594	2	473.259248	944.503943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.527	1	47.527	47.027	48.027	0								0	0	0	0.16876	1	16725	16725		9.3831	0	1		+		53987	17438	39282	39596	52695	52695					0.02947115123618005
TIRTQFDTC	9	Unmodified	_TIRTQFDTC_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48755439-48768558:+|nuORF;ENST00000504586.1_1_17:48764852-48765787:+|nuORF;ENST00000508929.1_1_17:48764852-48768558:+|nuORF	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	A375_MHC_IP_R1	1	542.7442016601562	2	542.758223	1083.50189	-0.42842	-0.00023253	-0.77856	-0.00042257	-1.207	-0.0006551	542.7574345326859	93.186	0.45876	93.186	92.871	93.329	0					13	8	2	0	0	0	0.6324	1	34190	34190		13.042	6.3193	1	615810			53988	2844	39283	39597	52696	52696					-0.03651681676501539
TIRTRERKRRH	11	Unmodified	_TIRTRERKRRH_					0	0	0		ENST00000343004.9_1_X:133931066-133931180:-|nuORF	ENST00000343004.9_1_X:133931066-133931180:-|nuORF	ENST00000343004.9_1_X:133931066-133931180:-|nuORF	MSMS	A375_MHC_IP_R2	2	755.1353759765625	2	754.953281	1507.89201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.46	1	116.15	115.65	116.65	0.68999								0	0	0	0.16334	1	43525	43525		1.3295	1.0605	1				53989	10884	39284	39598	52697	52697					0.1583784076833581
TIRTRPLEF	9	Unmodified	_TIRTRPLEF_					0	0	0			REV__nc|ENSG00000102452|Q8IZF0-2|NALCN	REV__nc|ENSG00000102452|Q8IZF0-2|NALCN	MULTI-SECPEP	A375_MHC_IP_R1	1	377.9728088378906	3	378.220624	1131.64004	0.53037	0.0002006	-0.49368	-0.00018672	0.036692	1.3878E-05	378.22044589806455	44.212	0.51321	44.212	44.01	44.523	0					17	9	3	0	0	0	0.71541	1	15439	15439		11.495	10.04	1	1579000	+		53990	25103	39285	39599	52698	52698					0.07948809634262943
TIRYIQAPDL	10	Unmodified	_TIRYIQAPDL_					0	0	0			REV__APOBEC3A|p.V92I|1|0.29|ENSG00000128383|chr22:38961486-38961486|G/A|missense_variant	REV__APOBEC3A|p.V92I|1|0.29|ENSG00000128383|chr22:38961486-38961486|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	595.4771118164062	2	595.332413	1188.65027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.855	1	75.593	75.093	76.093	0.73752								0	0	0	0.15332	1	28412	28412		10.074	0	1		+		53991	15425	39286	39600	52699	52699					0.06349372568843137
TIRYQLVRLFY	11	Unmodified	_TIRYQLVRLFY_					0	0	0		DPAGT1|p.S396T|1|0.36|ENSG00000172269|chr11:119097039-119097039|A/T|missense_variant	DPAGT1|p.S396T|1|0.36|ENSG00000172269|chr11:119097039-119097039|A/T|missense_variant	DPAGT1|p.S396T|1|0.36|ENSG00000172269|chr11:119097039-119097039|A/T|missense_variant	MSMS	A375_MHC_IP_R1	1	736.4230346679688	2	736.424636	1470.83472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.306	1	82.306	81.806	82.806	0								0	0	0	0.16307	1	30097	30097		2.7352	1.2533	1				53992	788	39287	39601	52700	52700					0.11813560719406269
TISADDVKKL	10	Unmodified	_TISADDVKKL_					0	0	0		tr|U7SSH0|U7SSH0_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01631PE=3SV=1	tr|U7SSH0|U7SSH0_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01631PE=3SV=1	tr|U7SSH0|U7SSH0_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01631PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	363.2847900390625	3	363.876523	1088.60774	-0.41844	-0.00015226	4.4465	0.001618	4.028	0.0014657	364.2129774967661	56.492	0.45881	57.242	57.051	57.51	0.75015					11	8	2	0	0	0	0.89761	1	21454	21454		14.957	10.428	1	1473600			53993	29633	39288	39602	52701	52701					0.06697977440603609
TISAGIYSL	9	Unmodified	_TISAGIYSL_					0	0	0		ENST00000332995.11_1_6:13287324-13287486:+|nuORF	ENST00000332995.11_1_6:13287324-13287486:+|nuORF	ENST00000332995.11_1_6:13287324-13287486:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	463.15557861328125	2	462.755475	923.496398	-0.39488	-0.00018274	-0.59145	-0.0002737	-0.98633	-0.00045643	462.75553350096754	65.637	2.1913	65.637	65.309	67.5	0					101	42	4	0	0	0	0.3243	1	23739	23739		36.044	0	1	8451900			53994	10780	39289	39603	52702	52702					0.031589628033202644
TISAGIYSL	9	Unmodified	_TISAGIYSL_					0	0	0		ENST00000332995.11_1_6:13287324-13287486:+|nuORF	ENST00000332995.11_1_6:13287324-13287486:+|nuORF	ENST00000332995.11_1_6:13287324-13287486:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	463.1551513671875	2	462.755475	923.496398	-0.57762	-0.00026729	-0.6228	-0.0002882	-1.2004	-0.0005555	462.75548581941746	64.77	2.343	65.508	65.103	67.446	0.73811					93	45	3	0	0	0	0.14105	1	24502	24502		50.855	0	1	7315400			53995	10780	39289	39603	52703	52703					0.031589628033202644
TISEPKTY	8	Unmodified	_TISEPKTY_					0	0	0		ENSG00000111802|ENST00000378198|TDP2;nc|ENSG00000111802|O95551-2|TDP2	ENSG00000111802|ENST00000378198|TDP2	ENSG00000111802|ENST00000378198|TDP2	MULTI-MSMS	A375_MHC_IP_R1	1	470.1446838378906	2	469.745108	937.475663	-0.66826	-0.00031391	-0.021674	-1.0181E-05	-0.68993	-0.00032409	469.7450134540391	26.601	0.55414	26.601	26.423	26.978	0					16	10	2	0	0	0	0.57987	1	7989	7989		45.7	5.7423	1	3448200			53996	3031	39290	39604	52704	52704					0.00442372423674442
TISEPKTY	8	Unmodified	_TISEPKTY_					0	0	0		ENSG00000111802|ENST00000378198|TDP2;nc|ENSG00000111802|O95551-2|TDP2	ENSG00000111802|ENST00000378198|TDP2	ENSG00000111802|ENST00000378198|TDP2	MULTI-MSMS	A375_MHC_IP_R2	2	470.1444396972656	2	469.745108	937.475663	-1.0241	-0.00048107	0.68094	0.00031987	-0.34317	-0.0001612	469.7452909900933	26.068	0.50733	26.728	26.602	27.109	0.65992					15	9	2	0	0	0	0.47739	1	8811	8811		49.933	1.5872	1	3582700			53997	3031	39290	39604	52705	52705					0.00442372423674442
TISIAEWREY	10	Unmodified	_TISIAEWREY_					0	0	0		nc|ENSG00000030304|O15146-3|MUSK;nc|ENSG00000030304|O15146-2|MUSK	nc|ENSG00000030304|O15146-3|MUSK	nc|ENSG00000030304|O15146-3|MUSK	MULTI-SECPEP	A375_MHC_IP_R1	1	422.9688720703125	3	423.215427	1266.62445	-0.14289	-6.0475E-05	-3.2798	-0.0013881	-3.4227	-0.0014485	423.2141644338451	19.531	0.50879	19.531	19.42	19.928	0					18	9	3	0	0	0	0.93578	1	4841	4841		5.7834	3.3486	1	1618800			53998	14459	39291	39605	52706	52706					0.0018047832659249252
TISKTKAKQVV	11	Unmodified	_TISKTKAKQVV_					0	0	0		ENSG00000155816|ENST00000319653|FMN2	ENSG00000155816|ENST00000319653|FMN2	ENSG00000155816|ENST00000319653|FMN2	MULTI-MSMS	A375_MHC_IP_R1	1	401.59619140625	3	401.587084	1201.73942	-0.25944	-0.00010419	0.41393	0.00016623	0.15449	6.2039E-05	401.58725335818275	50.089	0.8184	50.089	49.845	50.663	0					38	15	4	0	0	0	0.73078	1	17695	17695		4.1166	1.0444	1	9217100			53999	6156	39292	39606	52707	52707					0.1466220752836307
TISLPSFFI	9	Unmodified	_TISLPSFFI_					0	0	0			REV__CON__Q9N2I2	REV__CON__Q9N2I2	MULTI-SECPEP	A375_MHC_IP_R2	2	512.670654296875	2	512.789318	1023.56408	-0.56513	-0.0002898	-0.12607	-6.4648E-05	-0.69121	-0.00035444	512.7893842196121	138.97	0.15033	139.03	138.9	139.05	0.059906					4	2	2	0	0	0	0.78348	1	54432	54432		7.9102	0	1	408980	+	+	54000	15901	39293	39607	52708	52708					0.05324412734148609
TISLPSFFI	9	Unmodified	_TISLPSFFI_					0	0	0			REV__CON__Q9N2I2	REV__CON__Q9N2I2	MULTI-MATCH	A375_MHC_IP_R1	1		2	512.789318	1023.56408	-0.81679	-0.00041884	0.15531	7.964E-05	-0.66149	-0.0003392	512.7891284561512	139.07	0.25179	139.07	138.91	139.17	0	0.022532	0.00016236	NaN	7.9102	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	642770	+	+	54001	15901	39293	39607							0.05324412734148609
TISLSFHGRL	10	Unmodified	_TISLSFHGRL_					0	0	0			REV__DDX60|p.P1363S|1|0.34|ENSG00000137628|chr4:168246495-168246495|G/A|missense_variant	REV__DDX60|p.P1363S|1|0.34|ENSG00000137628|chr4:168246495-168246495|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	565.4215087890625	2	565.819473	1129.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.87	1	117.53	117.03	118.03	0.65962								0	0	0	0.15365	1	44196	44196		10.074	2.1638	1		+		54002	15980	39294	39608	52709	52709					0.06476523117225952
TISPLLNYGR	10	Unmodified	_TISPLLNYGR_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	A375_MHC_IP_R2	2	378.9497375488281	3	378.548629	1132.62406	-0.2276	-8.6157E-05	0.4791	0.00018136	0.2515	9.5205E-05	378.54881033187064	29.862	0.60721	30.561	30.335	30.942	0.69872					30	11	4	0	0	0	0.70312	1	10476	10476		10.899	0.58372	1	6510700	+		54003	22284	39295	39609	52710	52710					0.06305103397380662
TISPMSLMI	9	Unmodified	_TISPMSLMI_					0	0	0			REV__tr|U7SH86|U7SH86_FUSNUP-typeconjugativetransferproteinTrbLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02197PE=4SV=1	REV__tr|U7SH86|U7SH86_FUSNUP-typeconjugativetransferproteinTrbLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02197PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	497.1974182128906	2	496.761389	991.508225	-0.55691	-0.00027665	-0.067296	-3.343E-05	-0.6242	-0.00031008	496.76135489754483	55.492	0.55653	56.242	55.984	56.54	0.75075					15	10	2	0	0	0	0.46038	1	20898	20898		21.747	0	1	1488400	+		54004	28200	39296	39610	52711	52711					0.012131202306704836
TISPMSLMI	9	Unmodified	_TISPMSLMI_					0	0	0			REV__tr|U7SH86|U7SH86_FUSNUP-typeconjugativetransferproteinTrbLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02197PE=4SV=1	REV__tr|U7SH86|U7SH86_FUSNUP-typeconjugativetransferproteinTrbLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02197PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	496.761389	991.508225	-0.55691	-0.00027665	-0.067296	-3.343E-05	-0.6242	-0.00031008	496.76135489754483	55.492	0.55653	56.242	55.984	56.54	0.75075	-0.054074	0.00010258	NaN	21.747	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1488400	+		54005	28200	39296	39610							0.012131202306704836
TISPVLTTLW	10	Unmodified	_TISPVLTTLW_					0	0	0			REV__ENST00000294785.9_1_1:160324037-160325488:+|nuORF	REV__ENST00000294785.9_1_1:160324037-160325488:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	565.1636962890625	2	565.826432	1129.63831	-0.43658	-0.00024703	-2.6022	-0.0014724	-3.0388	-0.0017194	565.825303686942	77.073	0.14993	77.815	77.707	77.857	0.74293					4	2	2	0	0	0	0.92389	1	29241	29241		3.9444	0	1	715450	+		54006	23376	39297	39611	52712	52712					0.0786775582566861
TISSRELL	8	Unmodified	_TISSRELL_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	A375_MHC_IP_R1	1	460.16619873046875	2	459.766374	917.518196	0.0084956	3.906E-06	-0.067685	-3.1119E-05	-0.059189	-2.7213E-05	459.7664118403326	69.13	0.45539	69.13	68.717	69.173	0					12	8	2	0	0	0	0.972	1	25081	25081		3.9444	0	1	1137500	+		54007	19741	39298	39612	52713	52713					0.056137675519039476
TISSYWIDL	9	Unmodified	_TISSYWIDL_					0	0	0			REV__ENSG00000274102|ENST00000614722|OR4M2	REV__ENSG00000274102|ENST00000614722|OR4M2	MULTI-SECPEP	A375_MHC_IP_R1	1	548.7059936523438	2	549.279315	1096.54408	-0.56572	-0.00031074	-0.71764	-0.00039419	-1.2834	-0.00070492	549.2789504466596	57.991	0.60901	57.991	57.669	58.278	0					9	6	2	0	0	0	0.3243	1	20833	20833		44.407	15.325	1	1302100	+		54008	21398	39299	39613	52714	52714					-0.0003338299648021348
TISTSKVI	8	Unmodified	_TISTSKVI_					0	0	0			REV__ENST00000231004.4_1_5:121400787-121401027:-|nuORF	REV__ENST00000231004.4_1_5:121400787-121401027:-|nuORF	MSMS	A375_MHC_IP_R2	2	424.65533447265625	2	424.758018	847.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.458	1	64.198	63.698	64.698	0.74022								0	0	0	0.16876	1	24057	24057		5.7604	0	1		+		54009	23067	39300	39614	52715	52715					0.07163266665941137
TISVKNIPF	9	Unmodified	_TISVKNIPF_					0	0	0		ENST00000538029.1_1_12:9162377-9162479:+|nuORF	ENST00000538029.1_1_12:9162377-9162479:+|nuORF	ENST00000538029.1_1_12:9162377-9162479:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	510.9737854003906	2	509.800217	1017.58588	-0.76055	-0.00038773	0.31645	0.00016132	-0.44411	-0.00022641	509.8004088158801	96.236	0.70988	96.987	96.703	97.413	0.75044					29	13	3	0	0	0	0.68216	1	36441	36441		8.5933	0	1	4851400			54010	13254	39301	39615	52716	52716					0.07779217482720924
TISYRGTFQE	10	Unmodified	_TISYRGTFQE_					0	0	0		SULT4A1|p.M152I|1|0.38|ENSG00000130540|chr22:43838919-43838919|C/T|missense_variant	SULT4A1|p.M152I|1|0.38|ENSG00000130540|chr22:43838919-43838919|C/T|missense_variant	SULT4A1|p.M152I|1|0.38|ENSG00000130540|chr22:43838919-43838919|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	602.1973266601562	2	601.296027	1200.5775	-0.39265	-0.0002361	-1.1516	-0.00069246	-1.5443	-0.00092856	601.2961476384636	64.147	3.106	64.147	62.966	66.072	0					148	60	3	0	0	0	0.55789	1	22999	22999		24.021	0	1	9172200			54011	29269	39302	39616	52717	52717					-0.014763812245973895
TITAVPSQP	9	Unmodified	_TITAVPSQP_					0	0	0		ENSG00000154928|ENST00000398015|EPHB1;nc|ENSG00000154928|P54762-5|EPHB1	ENSG00000154928|ENST00000398015|EPHB1	ENSG00000154928|ENST00000398015|EPHB1	MULTI-SECPEP	A375_MHC_IP_R2	2	456.6688537597656	2	457.2531	912.491647	-0.49012	-0.00022411	-0.2114	-9.6662E-05	-0.70152	-0.00032077	457.25176629401693	40.737	0.51006	41.512	41.335	41.845	0.77451					10	9	2	0	0	0	0.37663	1	15129	15129		23.79	0	1	560120			54012	6116	39303	39617	52718	52718					0.031900786605774556
TITEPGFYT	9	Unmodified	_TITEPGFYT_					0	0	0		tr|U7T8J6|U7T8J6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00075PE=4SV=1	tr|U7T8J6|U7T8J6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00075PE=4SV=1	tr|U7T8J6|U7T8J6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00075PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	1030.3739013671875	1	1028.4935	1027.48623	0.23819	0.00024497	-0.8645	-0.00088913	-0.62631	-0.00064416	1028.4929012238745	94.229	0.86002	94.974	94.515	95.375	0.74474					38	16	3	0	0	0	0.38603	1	35809	35809		25.399	3.6527	1	9629800			54013	30063	39304	39618	52719	52719					-0.02641644921891384
TITEPGFYT	9	Unmodified	_TITEPGFYT_					0	0	0		tr|U7T8J6|U7T8J6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00075PE=4SV=1	tr|U7T8J6|U7T8J6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00075PE=4SV=1	tr|U7T8J6|U7T8J6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00075PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	1028.4935	1027.48623	0.023153	2.3813E-05	-0.6601	-0.00067891	-0.63695	-0.0006551	1028.4931970640876	94.879	0.86654	94.879	94.497	95.364	0	-0.047405	7.7892E-05	NaN	25.399	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11222000			54014	30063	39304	39618							-0.02641644921891384
TITEPYRTL	9	Unmodified	_TITEPYRTL_					0	0	0		GEMIN5|p.L1343Efs*7|1|0.2|ENSG00000082516|chr5:154891475-154891476|AA/-|frameshift_variant;ENSG00000082516|ENST00000285873|GEMIN5	GEMIN5|p.L1343Efs*7|1|0.2|ENSG00000082516|chr5:154891475-154891476|AA/-|frameshift_variant	GEMIN5|p.L1343Efs*7|1|0.2|ENSG00000082516|chr5:154891475-154891476|AA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6976318359375	2	547.298039	1092.58152	-0.56617	-0.00030987	0.08014	4.3861E-05	-0.48603	-0.000266	547.2979452868923	50.463	0.966	50.463	50.153	51.119	0					44	18	4	0	0	0	0.11751	1	17840	17840		80.676	28.408	1	15274000			54015	1763	39305	39619	52720	52720					0.0389370826915183
TITEYAREI	9	Unmodified	_TITEYAREI_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;ENST00000471359.1_1_20:25274602-25277155:+|nuORF;PYGB|p.R816Q|1|0.38|ENSG00000100994|chr20:25296437-25296437|G/A|missense_variant	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	A375_MHC_IP_R1	1	548.6879272460938	2	548.287671	1094.56079	-0.4676	-0.00025638	-0.0030117	-1.6513E-06	-0.47061	-0.00025803	548.2876599703726	55.849	1.2198	55.849	55.533	56.753	0					57	23	4	0	0	0	0.059502	1	19937	19937		69.338	4.1032	1	15843000			54016	2241	39306	39620	52721	52721					0.017291178894765835
TITEYAREI	9	Unmodified	_TITEYAREI_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;ENST00000471359.1_1_20:25274602-25277155:+|nuORF;PYGB|p.R816Q|1|0.38|ENSG00000100994|chr20:25296437-25296437|G/A|missense_variant	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6600952148438	2	548.287671	1094.56079	-0.91543	-0.00050192	0.24527	0.00013448	-0.67016	-0.00036744	548.2878075798773	55.018	1.1185	55.769	55.473	56.591	0.75075					60	21	4	0	0	0	0.12938	1	20835	20835		69.338	4.1032	1	19011000			54017	2241	39306	39620	52722	52722					0.017291178894765835
TITFLLKQT	9	Unmodified	_TITFLLKQT_					0	0	0		ENST00000535257.1_1_12:122391860-122397069:+|nuORF	ENST00000535257.1_1_12:122391860-122397069:+|nuORF	ENST00000535257.1_1_12:122391860-122397069:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1064.63818359375	1	1064.63502	1063.62775	0.075598	8.0484E-05	-2.537	-0.002701	-2.4614	-0.0026205	1065.6389572898572	127	0.25339	127.26	127.06	127.31	0.26593					5	4	2	0	0	0	0.70411	1	49671	49671		10.074	2.1638	1	2836700			54018	13226	39307	39621	52723	52723					0.0984777317123644
TITKGFERK	9	Unmodified	_TITKGFERK_					0	0	0			REV__ENSG00000157060|ENST00000367547|SHCBP1L	REV__ENSG00000157060|ENST00000367547|SHCBP1L	MULTI-MSMS	A375_MHC_IP_R1	1	360.9449462890625	3	360.545108	1078.61349	0.34109	0.00012298	-0.43072	-0.00015529	-0.08963	-3.2316E-05	360.54484368857885	35.589	0.51089	35.589	35.319	35.83	0					27	9	3	0	0	0	0.44024	1	11877	11877		16.566	0.82726	1	5795400	+		54019	20008	39308	39622	52724	52724					0.0773312074295518
TITKGFERK	9	Unmodified	_TITKGFERK_					0	0	0			REV__ENSG00000157060|ENST00000367547|SHCBP1L	REV__ENSG00000157060|ENST00000367547|SHCBP1L	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	360.545108	1078.61349	0.34109	0.00012298	-0.43072	-0.00015529	-0.08963	-3.2316E-05	360.54484368857885	35.589	0.51089	35.589	35.319	35.83	0	0.094369	-6.2759E-05	NaN	16.566	27	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5795400	+		54020	20008	39308	39622							0.0773312074295518
TITKGFERK	9	Unmodified	_TITKGFERK_					0	0	0			REV__ENSG00000157060|ENST00000367547|SHCBP1L	REV__ENSG00000157060|ENST00000367547|SHCBP1L	MULTI-MATCH	A375_MHC_IP_R2	2		3	360.545108	1078.61349	-0.39132	-0.00014109	-0.31737	-0.00011443	-0.70869	-0.00025551	360.5449769432815	34.637	0.60815	35.401	35.119	35.727	0.76338	-0.094369	5.9846E-05	NaN	16.566	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7649200	+		54021	20008	39308	39622							0.0773312074295518
TITKVLQKY	9	Unmodified	_TITKVLQKY_					0	0	0		nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2;HELZ2|p.D2407Afs*38|1|0.4|ENSG00000130589|chr20:63560856-63560856|T/-|frameshift_variant	nc|ENSG00000130589|Q9BYK8|HELZ2	nc|ENSG00000130589|Q9BYK8|HELZ2	MSMS	A375_MHC_IP_R1	1	547.3956298828125	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.802	1	97.802	97.302	98.302	0								0	0	0	0.15486	1	35931	35931		7.9102	3.1541	1				54022	14599	39309	39623	52725	52725					0.11167462062576305
TITLEVELS	9	Unmodified	_TITLEVELS_					0	0	0		UBC|p.P627L|1|0.25|ENSG00000150991|chr12:124911892-124911892|G/A|missense_variant	UBC|p.P627L|1|0.25|ENSG00000150991|chr12:124911892-124911892|G/A|missense_variant	UBC|p.P627L|1|0.25|ENSG00000150991|chr12:124911892-124911892|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	502.68603515625	2	502.779148	1003.54374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.036	1	76.036	75.536	76.536	0								0	0	0	0.14677	1	27709	27709		26.884	3.7352	1				54023	30104	39310	39624	52726	52726					0.04211197283677848
TITQLTKHI	9	Unmodified	_TITQLTKHI_					0	0	0		nc|ENSG00000148541|Q8NE31-2|FAM13C;nc|ENSG00000148541|Q8NE31-3|FAM13C;ENSG00000148541|ENST00000618804|FAM13C;nc|ENSG00000148541|Q8NE31-5|FAM13C;nc|ENSG00000148541|Q8NE31-4|FAM13C	nc|ENSG00000148541|Q8NE31-2|FAM13C	nc|ENSG00000148541|Q8NE31-2|FAM13C	MULTI-SECPEP	A375_MHC_IP_R1	1	528.2163696289062	2	527.816399	1053.61824	-0.52913	-0.00027929	0.25598	0.00013511	-0.27315	-0.00014417	527.816428894871	43.891	0.66371	43.891	43.706	44.37	0					25	12	3	0	0	0	0.20059	1	15294	15294		59.368	11.62	1	7841200			54024	5750	39311	39625	52727	52727					0.09358004885712035
TITSAVLV	8	Unmodified	_TITSAVLV_					0	0	0		ENSG00000197241|ENST00000400906|SLC2A7	ENSG00000197241|ENST00000400906|SLC2A7	ENSG00000197241|ENST00000400906|SLC2A7	MULTI-SECPEP	A375_MHC_IP_R2	2	402.6472473144531	2	402.247286	802.48002	-0.55699	-0.00022405	0.14423	5.8014E-05	-0.41277	-0.00016603	402.2475750985497	29.661	0.30108	30.36	30.236	30.537	0.69872					8	5	2	0	0	0	0.972	1	10414	10414		4.756	0	1	1978500			54025	9135	39312	39626	52728	52728					0.07087881637244209
TITVQADPLDP	11	Unmodified	_TITVQADPLDP_					0	0	0		MYCL|p.R192Q|1|0.55|ENSG00000116990|chr1:39897892-39897892|C/T|missense_variant	MYCL|p.R192Q|1|0.55|ENSG00000116990|chr1:39897892-39897892|C/T|missense_variant	MYCL|p.R192Q|1|0.55|ENSG00000116990|chr1:39897892-39897892|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	390.26788330078125	3	390.539799	1168.59757	-0.19259	-7.5213E-05	0.18192	7.1045E-05	-0.010672	-4.1678E-06	390.53974219892143	32.198	0.71234	32.935	32.654	33.367	0.73692					25	13	3	0	0	0	0.71476	1	11465	11465		8.2864	0	1	7420000			54026	14427	39313	39627	52729	52729					0.020013697153899557
TIVEVLGELL	10	Unmodified	_TIVEVLGELL_					0	0	0			REV__ENSG00000164327|ENST00000357387|RICTOR	REV__ENSG00000164327|ENST00000357387|RICTOR	MULTI-SECPEP	A375_MHC_IP_R2	2	1086.0130615234375	1	1085.64525	1084.63798	0.080869	8.7795E-05	0.64449	0.00069969	0.72536	0.00078748	1085.6456730940067	130.57	0.3549	130.78	130.65	131.01	0.2142					11	6	3	0	0	0	0.8125	1	51288	51288		18.146	0	1	121140000	+		54027	20484	39314	39628	52730	52730					0.09904336105819311
TIVGLNVLRI	10	Unmodified	_TIVGLNVLRI_					0	0	0		ENST00000456928.2_1_12:4206979-4207195:+|nuORF	ENST00000456928.2_1_12:4206979-4207195:+|nuORF	ENST00000456928.2_1_12:4206979-4207195:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	548.67529296875	2	549.355691	1096.69683	-0.53725	-0.00029514	-0.29041	-0.00015954	-0.82766	-0.00045468	549.3553875716995	75.104	0.55679	75.104	74.805	75.362	0					13	10	2	0	0	0	0.91556	1	27399	27399		10.074	7.0787	1	945100			54028	12137	39315	39629	52731	52731					0.15234857190785078
TIVHDFRIT	9	Unmodified	_TIVHDFRIT_					0	0	0			REV__ENSG00000173369|ENST00000509305|C1QB	REV__ENSG00000173369|ENST00000509305|C1QB	MULTI-SECPEP	A375_MHC_IP_R1	1	367.12396240234375	3	367.873224	1100.59784	0.17528	6.448E-05	2.3066	0.00084854	2.4819	0.00091302	367.8732939281781	52.602	0.81067	52.602	52.136	52.946	0					32	15	3	0	0	0	0.67483	1	18538	18538		14.405	0	1	2676600	+		54029	21216	39316	39630	52732	52732					0.051568342258860866
TIVHDFRIT	9	Unmodified	_TIVHDFRIT_					0	0	0			REV__ENSG00000173369|ENST00000509305|C1QB	REV__ENSG00000173369|ENST00000509305|C1QB	MULTI-MATCH	A375_MHC_IP_R2	2		3	367.873224	1100.59784	-0.077092	-2.836E-05	0.098451	3.6218E-05	0.02136	7.8577E-06	367.8731561961346	51.675	0.61103	52.427	52.169	52.78	0.75225	-0.087228	-9.3649E-05	NaN	14.405	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2286600	+		54030	21216	39316	39630							0.051568342258860866
TIVHVLDSL	9	Unmodified	_TIVHVLDSL_					0	0	0			REV__ENST00000557739.1_1_14:35227840-35228035:-|nuORF	REV__ENST00000557739.1_1_14:35227840-35228035:-|nuORF	MSMS	A375_MHC_IP_R2	2	498.7337341308594	2	498.78985	995.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.53	1	102.29	101.79	102.79	0.76428								0	0	0	0.13141	1	38484	38484		32.305	3.8186	1		+		54031	26129	39317	39631	52733	52733					0.06718627103043673
TIVIIVIIIHS	11	Unmodified	_TIVIIVIIIHS_					0	0	0			REV__ENST00000560440.5_2_15:78765777-78765897:+|nuORF	REV__ENST00000560440.5_2_15:78765777-78765897:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	610.5840454101562	2	610.902474	1219.7904	-0.38808	-0.00023708	3.8115	0.0023285	3.4234	0.0020914	611.404958511465	89.805	0.15085	89.805	89.679	89.83	0					4	2	2	0	0	0	0.99676	1	32995	32995		2.9952	2.6446	1	503550	+		54032	26166	39318	39632	52734	52734					0.18929156573244654
TIVKRPDGY	9	Unmodified	_TIVKRPDGY_					0	0	0			REV__MAGEB18|p.M244I|1|0.28|ENSG00000176774|chrX:26139717-26139717|G/A|missense_variant	REV__MAGEB18|p.M244I|1|0.28|ENSG00000176774|chrX:26139717-26139717|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	525.1741333007812	2	524.792924	1047.57129	-0.34322	-0.00018012	-0.87345	-0.00045838	-1.2167	-0.0006385	524.7929725206409	46.675	0.30472	47.437	47.258	47.563	0.76128					7	5	2	0	0	0	0.77834	1	17511	17511		4.756	0.42677	1	1248600	+		54033	26974	39319	39633	52735	52735					0.049411453345555856
TIVKSTEL	8	Unmodified	_TIVKSTEL_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-SECPEP	A375_MHC_IP_R1	1	446.16314697265625	2	445.7633	889.512048	-0.18563	-8.2746E-05	-0.041776	-1.8622E-05	-0.2274	-0.00010137	445.7631634016387	65.653	0.6118	65.653	65.309	65.921	0					19	11	3	0	0	0	0.86263	1	23762	23762		26.884	0	1	2511000			54034	9276	39320	39634	52736	52736					0.06287249320382671
TIVKSTEL	8	Unmodified	_TIVKSTEL_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-SECPEP	A375_MHC_IP_R2	2	446.1632080078125	2	445.7633	889.512048	-0.33002	-0.00014711	-0.2066	-9.2095E-05	-0.53662	-0.00023921	445.76313866852223	64.558	0.61152	65.298	65.054	65.666	0.74023					16	11	2	0	0	0	0.90775	1	24481	24481		26.884	0	1	2192700			54035	9276	39320	39634	52737	52737					0.06287249320382671
TIVPTCWW	8	Unmodified	_TIVPTCWW_					0	0	0			REV__nc|ENSG00000141562|Q9UHQ1-2|NARF	REV__nc|ENSG00000141562|Q9UHQ1-2|NARF	MSMS	A375_MHC_IP_R2	2	503.1927795410156	2	503.246763	1004.47897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.079	1	82.822	82.322	83.322	0.74293								0	0	0	0.16876	1	31177	31177		8.5933	2.2392	1		+		54036	27266	39321	39635	52738	52738					-0.023086560033334536
TIVVETKKH	9	Unmodified	_TIVVETKKH_					0	0	0			REV__ENSG00000183735|ENST00000331710|TBK1	REV__ENSG00000183735|ENST00000331710|TBK1	MULTI-SECPEP	A375_MHC_IP_R1	1	527.1760864257812	2	527.816399	1053.61824	-0.35932	-0.00018966	-0.019351	-1.0214E-05	-0.37867	-0.00019987	527.8162606037255	43.305	0.40736	43.305	43.095	43.502	0					17	7	3	0	0	0	0.76187	1	15031	15031		7.2892	2.5332	1	3808800	+		54037	21773	39322	39636	52739	52739					0.09358004885712035
TIWDGEETVY	10	Unmodified	_TIWDGEETVY_					0	0	0		ENSG00000100625|ENST00000216513|SIX4;ENSG00000177045|ENST00000317578|SIX5	ENSG00000100625|ENST00000216513|SIX4;ENSG00000177045|ENST00000317578|SIX5	ENSG00000100625|ENST00000216513|SIX4	MULTI-SECPEP	A375_MHC_IP_R1	1	607.173095703125	2	606.774593	1211.53463	-0.38192	-0.00023174	-0.027548	-1.6715E-05	-0.40947	-0.00024846	606.7746195493802	89.735	0.70823	89.735	89.476	90.184	0					27	13	3	0	0	0	0.8125	1	32985	32985		18.146	18.146	1	2180300			54038	2203;8058	39323	39637	52740	52740					-0.06267196072667502
TIWFYKESYLR	11	Unmodified	_TIWFYKESYLR_					0	0	0		ENSG00000138892|ENST00000433387|TTLL8;nc|ENSG00000138892|A6PVC2-2|TTLL8;nc|ENSG00000138892|A6PVC2|TTLL8	ENSG00000138892|ENST00000433387|TTLL8	ENSG00000138892|ENST00000433387|TTLL8	MSMS	A375_MHC_IP_R2	2	753.5578002929688	2	753.393002	1504.77145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.74	1	101.5	101	102	0.76278								0	0	0	0.16258	1	38193	38193		5.2969	1.1074	1				54039	5044	39324	39638	52741	52741					0.039255752114968345
TIWISTHIS	9	Unmodified	_TIWISTHIS_					0	0	0			REV__ENSG00000180269|ENST00000570682|GPR139	REV__ENSG00000180269|ENST00000570682|GPR139	MULTI-MSMS	A375_MHC_IP_R1	1	530.1556396484375	2	529.287474	1056.5604	-0.46354	-0.00024535	-0.94157	-0.00049836	-1.4051	-0.00074371	529.2875617129123	96.858	0.70845	96.858	96.529	97.238	0					29	13	3	0	0	0	0.65721	1	35583	35583		10.824	0	1	3526800	+		54040	21603	39325	39639	52742	52742					0.034377429602727716
TIWVTKINL	9	Unmodified	_TIWVTKINL_					0	0	0			REV__nc|ENSG00000138079|Q07837-3|SLC3A1	REV__nc|ENSG00000138079|Q07837-3|SLC3A1	MULTI-SECPEP	A375_MHC_IP_R2	2	544.2237548828125	2	544.329142	1086.64373	-0.79177	-0.00043098	-0.41944	-0.00022832	-1.2112	-0.0006593	544.3285972168842	102.05	0.5587	102.82	102.72	103.28	0.76428					17	10	2	0	0	0	0.59098	1	38774	38774		23.148	0	1	1240100	+		54041	19061	39326	39640	52743	52743					0.10387479408109357
TIYILCLPI	9	Unmodified	_TIYILCLPI_					0	0	0			REV__ENSG00000255307|ENST00000530810|OR52B2	REV__ENSG00000255307|ENST00000530810|OR52B2	MULTI-SECPEP	A375_MHC_IP_R2	2	525.2086181640625	2	524.809196	1047.60384	-0.45994	-0.00024138	-0.91464	-0.00048001	-1.3746	-0.00072139	524.8086392612543	126.11	1.5155	126.4	125.67	127.19	0.2951					45	29	2	0	0	0	0.77834	1	49320	49320		2.0598	0	1	13979000	+		54042	22876	39327	39641	52744	52744					0.08194216413198774
TIYQQRME	8	Unmodified	_TIYQQRME_					0	0	0		ENST00000602661.5_1_9:108337365-108363450:+|nuORF;ENST00000602526.1_1_9:108337365-108363292:+|nuORF	ENST00000602661.5_1_9:108337365-108363450:+|nuORF	ENST00000602661.5_1_9:108337365-108363450:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	533.9706420898438	2	534.760766	1067.50698	-0.90128	-0.00048197	-0.42158	-0.00022544	-1.3229	-0.00070741	534.7603807140239	33.062	0.1534	33.814	33.686	33.84	0.75225					4	2	2	0	0	0	0.972	1	11766	11766		7.2892	7.2892	1	672760			54043	13886	39328	39642	52745	52745					-0.024073778138927082
TIYQYSFY	8	Unmodified	_TIYQYSFY_					0	0	0			REV__ENST00000468888.6_1_3:33580428-33584981:-|nuORF	REV__ENST00000468888.6_1_3:33580428-33584981:-|nuORF	MSMS	A375_MHC_IP_R1	1	542.6633911132812	2	542.752933	1083.49131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.503	1	47.503	47.003	48.003	0								0	0	0	0.16876	1	16715	16715		16.942	0.79319	1		+		54044	25088	39329	39643	52746	52746					-0.04709341059287908
TIYTNHLY	8	Unmodified	_TIYTNHLY_					0	0	0		nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9	nc|ENSG00000088387|Q9BZ29-3|DOCK9	nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-MSMS	A375_MHC_IP_R2	2	513.15869140625	2	512.758549	1023.50255	-0.80119	-0.00041081	-0.28023	-0.00014369	-1.0814	-0.00055451	512.7586377510621	70.793	0.45605	71.528	71.2	71.656	0.73421					16	8	3	0	0	0	0.70206	1	26838	26838		34.102	3.4659	1	4679000			54045	1892	39330	39644	52747	52747					-0.008265189651410765
TIYTRYMR	8	Unmodified	_TIYTRYMR_					0	0	0			REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	552.6498413085938	2	552.286951	1102.55935	-1.1121	-0.0006142	-0.64117	-0.00035411	-1.7533	-0.00096831	552.7877335245305	21.035	0.50663	21.654	21.321	21.828	0.61932					17	9	3	0	0	0	0.972	1	6581	6581		3.9444	0.3479	1	1714400	+		54046	15465	39331	39645	52748	52748					0.012172053197218702
TKARMRTHIYA	11	Unmodified	_TKARMRTHIYA_					0	0	0			REV__ENST00000487321.1_1_2:219114510-219118635:+|nuORF	REV__ENST00000487321.1_1_2:219114510-219118635:+|nuORF	MSMS	A375_MHC_IP_R2	2	674.4353637695312	2	674.369338	1346.72412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.703	1	12.201	11.701	12.701	0.49811								0	0	0	0.1636	1	3621	3621		0	0	1		+		54047	20366	39332	39646	52749	52749					0.06463017459554976
TKAYYIEIK	9	Unmodified	_TKAYYIEIK_					0	0	0			REV__NCAPH|p.H634Y|1|0.28|ENSG00000121152|chr2:96367275-96367275|C/T|missense_variant	REV__NCAPH|p.H634Y|1|0.28|ENSG00000121152|chr2:96367275-96367275|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	1128.705078125	1	1128.62994	1127.62266	0.27255	0.00030761	1.2159	0.0013724	1.4885	0.00168	1129.6344814178153	107.04	0.30767	107.04	106.88	107.19	0					14	5	4	0	0	0	0.70411	1	39315	39315		10.074	5.3179	1	2065500	+		54048	27581	39333	39647	52750	52750					0.06395469308586144
TKAYYIEIK	9	Unmodified	_TKAYYIEIK_					0	0	0			REV__NCAPH|p.H634Y|1|0.28|ENSG00000121152|chr2:96367275-96367275|C/T|missense_variant	REV__NCAPH|p.H634Y|1|0.28|ENSG00000121152|chr2:96367275-96367275|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	1128.923583984375	1	1128.62994	1127.62266	0.044259	4.9952E-05	1.2315	0.0013899	1.2757	0.0014398	1129.6327601574367	107.04	0.20222	107.79	107.64	107.84	0.75436					5	3	2	0	0	0	0.73491	1	40430	40430		6.2058	4.146	1	1469800	+		54049	27581	39333	39647	52751	52751					0.06395469308586144
TKCKYCSF	8	Unmodified	_TKCKYCSF_					0	0	0		tr|U7SED7|U7SED7_FUSNUCoproporphyrinogendehydrogenaseHemZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02333PE=4SV=1	tr|U7SED7|U7SED7_FUSNUCoproporphyrinogendehydrogenaseHemZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02333PE=4SV=1	tr|U7SED7|U7SED7_FUSNUCoproporphyrinogendehydrogenaseHemZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02333PE=4SV=1	MSMS	A375_MHC_IP_R2	2	490.15521240234375	2	490.222431	978.430309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.43	1	60.177	59.677	60.677	0.74714								0	0	0	0.16876	1	22492	22492		11.64	0.81637	1				54050	29382	39334	39648	52752	52752					-0.059768926347260276
TKCVFNCFVC	10	Unmodified	_TKCVFNCFVC_					0	0	0			REV__ENSG00000151612|ENST00000508784|ZNF827	REV__ENSG00000151612|ENST00000508784|ZNF827	MULTI-MSMS	A375_MHC_IP_R1	1	582.6555786132812	2	582.255948	1162.49734	-0.41198	-0.00023988	0.42801	0.00024921	0.016021	9.3286E-06	582.256089812221	52.905	0.50597	52.905	52.643	53.148	0					21	9	3	0	0	0	0.70329	1	18833	18833		10.824	2.0785	1	5049100	+		54051	19761	39335	39649	52753	52753					-0.07740605415278878
TKCVFNCFVC	10	Unmodified	_TKCVFNCFVC_					0	0	0			REV__ENSG00000151612|ENST00000508784|ZNF827	REV__ENSG00000151612|ENST00000508784|ZNF827	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	582.255948	1162.49734	-0.41198	-0.00023988	0.42801	0.00024921	0.016021	9.3286E-06	582.256089812221	52.905	0.50597	52.905	52.643	53.148	0	-0.019455	-7.4295E-06	NaN	10.824	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5049100	+		54052	19761	39335	39649							-0.07740605415278878
TKDICAGSNFT	11	Unmodified	_TKDICAGSNFT_					0	0	0			REV__nc|ENSG00000090905|Q8NDV7-2|TNRC6A	REV__nc|ENSG00000090905|Q8NDV7-2|TNRC6A	MSMS	A375_MHC_IP_R1	1	578.7296752929688	2	578.768788	1155.52302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.606	1	40.606	40.106	41.106	0								0	0	0	0.15694	1	13965	13965		16.149	2.2431	1		+		54053	16935	39336	39650	52754	52754					-0.04851716367647896
TKDLSRKLERY	11	Unmodified	_TKDLSRKLERY_					0	0	0			REV__ENSG00000111335|ENST00000392583|OAS2	REV__ENSG00000111335|ENST00000392583|OAS2	MULTI-MSMS	A375_MHC_IP_R1	1	470.66802978515625	3	470.268414	1407.78341	-0.31185	-0.00014665	-0.17029	-8.008E-05	-0.48213	-0.00022673	470.26827766028146	20.244	0.5565	20.244	19.928	20.485	0					14	10	2	0	0	0	0.73698	1	5188	5188		2.2527	0.32522	1	1596800	+		54054	17666	39337	39651	52755	52755					0.0958319195472086
TKEDKINEKK	10	Unmodified	_TKEDKINEKK_					0	0	0			REV__ENST00000481435.5_1_3:169693473-169703658:+|nuORF	REV__ENST00000481435.5_1_3:169693473-169703658:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	410.9747314453125	3	411.566348	1231.67722	-0.2822	-0.00011615	0.72325	0.00029766	0.44105	0.00018152	411.56663963692984	19.562	0.55701	20.172	19.942	20.499	0.61029					18	10	2	0	0	0	0.92199	1	6102	6102		7.4771	2.4295	1	1625100	+		54055	16182	39338	39652	52756	52756					0.07064436389350703
TKEDKVFHL	9	Unmodified	_TKEDKVFHL_					0	0	0			REV__ENSG00000122218|ENST00000241704|COPA	REV__ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	A375_MHC_IP_R1	1	558.66796875	2	558.806031	1115.59751	-0.38381	-0.00021448	0.04045	2.2604E-05	-0.34336	-0.00019187	558.8059643209413	42.425	0.70804	42.425	42.082	42.79	0					19	13	2	0	0	0	0.5212	1	14620	14620		21.747	2.4897	1	2442900	+		54056	18194	39339	39653	52757	52757					0.04433414506047484
TKEEEDEE	8	Unmodified	_TKEEEDEE_					0	0	0			REV__ENSG00000105996|ENST00000222718|HOXA2	REV__ENSG00000105996|ENST00000222718|HOXA2	MSMS	A375_MHC_IP_R1	1	504.69781494140625	2	504.703834	1007.39311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.487	1	32.487	31.987	32.987	0								0	0	0	0.16876	1	10501	10501		7.9102	0	1		+		54057	17424	39340	39654	52758	52758					-0.11028614165786621
TKEIEQVY	8	Unmodified	_TKEIEQVY_					0	0	0		nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1	nc|ENSG00000134283|Q8NEY8-3|PPHLN1	nc|ENSG00000134283|Q8NEY8-3|PPHLN1	MULTI-MSMS	A375_MHC_IP_R1	1	505.6634826660156	2	505.263665	1008.51278	-0.52454	-0.00026503	1.4592	0.00073728	0.93466	0.00047225	505.26374782271773	32.269	0.56052	32.269	32.024	32.585	0					22	10	3	0	0	0	0.2241	1	10441	10441		65.235	19.214	1	3196700			54058	14609	39341	39655	52759	52759					0.008860439694331035
TKEIEQVY	8	Unmodified	_TKEIEQVY_					0	0	0		nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1	nc|ENSG00000134283|Q8NEY8-3|PPHLN1	nc|ENSG00000134283|Q8NEY8-3|PPHLN1	MULTI-SECPEP	A375_MHC_IP_R2	2	505.663330078125	2	505.263665	1008.51278	-0.72161	-0.0003646	0.27888	0.00014091	-0.44273	-0.00022369	505.26371402141274	31.574	0.4599	32.306	32.09	32.55	0.7317					13	8	2	0	0	0	0.51146	1	11204	11204		43.858	15.371	1	4096000			54059	14609	39341	39655	52760	52760					0.008860439694331035
TKEIIVLTKR	10	Unmodified	_TKEIIVLTKR_					0	0	0			REV__ENSG00000166889|ENST00000300146|PATL1	REV__ENSG00000166889|ENST00000300146|PATL1	MULTI-MSMS	A375_MHC_IP_R2	2	1201.16650390625	1	1200.76743	1199.76016	0.38434	0.0004615	-0.42597	-0.00051149	-0.041628	-4.9986E-05	1200.7665187978007	149.48	1.8625	149.49	148.15	150.01	0.01825					174	67	4	0	0	0	0.72747	2	57847	57847;58045		0	0	1	868680	+		54060	20714	39342	39656	52761;52762	52761					0.1682679790799284
TKEKEFFDVWF	11	Unmodified	_TKEKEFFDVWF_					0	0	0		PDE6B|p.S291F|1|0.32|ENSG00000133256|chr4:654099-654099|C/T|missense_variant	PDE6B|p.S291F|1|0.32|ENSG00000133256|chr4:654099-654099|C/T|missense_variant	PDE6B|p.S291F|1|0.32|ENSG00000133256|chr4:654099-654099|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	492.4774475097656	3	492.578365	1474.71327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.657	1	36.421	35.921	36.921	0.76338								0	0	0	0.1628	1	12942	12942		4.1166	1.8639	1				54061	15150	39343	39657	52763	52763					-0.005101064337850403
TKEKLYDL	8	Unmodified	_TKEKLYDL_					0	0	0			REV__tr|U7SU35|U7SU35_FUSNUnicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01085PE=3SV=1	REV__tr|U7SU35|U7SU35_FUSNUnicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01085PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	504.69781494140625	2	505.281857	1008.54916	-0.58087	-0.0002935	0.64747	0.00032715	0.0666	3.3652E-05	505.2819109730222	32.43	0.45383	32.43	32.231	32.684	0					12	8	2	0	0	0	0.81376	1	10501	10501		39.957	1.9833	1	1173200	+		54062	28530	39344	39658	52764	52764					0.045229208661339726
TKEKPKEVAE	10	Unmodified	_TKEKPKEVAE_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2	nc|ENSG00000079819|O43491-3|EPB41L2	nc|ENSG00000079819|O43491-3|EPB41L2	MSMS	A375_MHC_IP_R2	2	579.8790283203125	2	579.821878	1157.6292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.172	1	21.791	21.291	22.291	0.61932								0	0	0	0.15549	1	6647	6647		2.9952	0	1				54063	1704	39345	39659	52765	52765					0.05669362469302541
TKEQAQNW	8	Unmodified	_TKEQAQNW_					0	0	0		tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	503.3085021972656	2	502.743431	1003.47231	-0.33245	-0.00016714	2.3726	0.0011928	2.0402	0.0010257	502.7440866343455	73.042	0.55888	73.042	72.676	73.235	0					13	10	2	0	0	0	0.972	1	26512	26512		8.5933	0.68312	1	803010			54064	29475	39346	39660	52766	52766					-0.02928877630347415
TKEQILEEF	9	Unmodified	_TKEQILEEF_					0	0	0		nc|ENSG00000271793|O60506-5|SYNCRIP;nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP	nc|ENSG00000271793|O60506-5|SYNCRIP	nc|ENSG00000271793|O60506-5|SYNCRIP	MULTI-SECPEP	A375_MHC_IP_R2	2	379.94879150390625	3	379.532645	1135.5761	-0.15162	-5.7543E-05	1.8547	0.00070393	1.7031	0.00064639	379.5333666785467	40.841	0.35591	41.615	41.438	41.794	0.77451					10	6	2	0	0	0	0.69507	1	15104	15104		13.615	0.74226	1	1575500			54065	4666	39347	39661	52767	52767					0.013739846866428707
TKERSRFTTLL	11	Unmodified	_TKERSRFTTLL_					0	0	0		nc|ENSG00000157833|Q75VX8-3|GAREM2;nc|ENSG00000157833|Q75VX8-2|GAREM2;ENSG00000157833|ENST00000401533|GAREM2	nc|ENSG00000157833|Q75VX8-3|GAREM2	nc|ENSG00000157833|Q75VX8-3|GAREM2	MULTI-MSMS	A375_MHC_IP_R1	1	451.18109130859375	3	451.261259	1350.76195	-0.41773	-0.0001885	-0.82975	-0.00037443	-1.2475	-0.00056294	451.2609747640884	132.95	0.76653	132.95	132.54	133.3	0					22	14	2	0	0	0	0.73332	1	51319	51319		2.6312	0	1	4832600			54066	6269	39348	39662	52768	52768					0.10059806925983139
TKERSRFTTLL	11	Unmodified	_TKERSRFTTLL_					0	0	0		nc|ENSG00000157833|Q75VX8-3|GAREM2;nc|ENSG00000157833|Q75VX8-2|GAREM2;ENSG00000157833|ENST00000401533|GAREM2	nc|ENSG00000157833|Q75VX8-3|GAREM2	nc|ENSG00000157833|Q75VX8-3|GAREM2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	451.261259	1350.76195	-0.21792	-9.8339E-05	-0.90555	-0.00040864	-1.1235	-0.00050698	451.26080854896185	132.82	0.5583	132.99	132.79	133.35	0.16487	0.017687	-3.1098E-05	NaN	2.6312	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3335700			54067	6269	39348	39662							0.10059806925983139
TKETSKKKKIL	11	Unmodified	_TKETSKKKKIL_					0	0	0			REV__ENST00000517666.5_1_8:124384069-124384906:-|nuORF	REV__ENST00000517666.5_1_8:124384069-124384906:-|nuORF	MSMS	A375_MHC_IP_R2	2	652.458251953125	2	652.41902	1302.82349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.2567	1	3.6926	3.1926	4.1926	0.43585								0	0	0	0.1636	1	1058	1058		0	0	1		+		54068	25672	39349	39663	52769	52769					0.18418738625291553
TKETYCSEL	9	Unmodified	_TKETYCSEL_					0	0	0			REV__ENST00000368452.2_6:122931626-122996266:+|nuORF	REV__ENST00000368452.2_6:122931626-122996266:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	537.6659545898438	2	537.244615	1072.47468	-1.0773	-0.00057876	2.7689	0.0014876	1.6916	0.0009088	537.2455786254551	72.162	0.50554	72.897	72.72	73.225	0.73421					10	9	2	0	0	0	0.60101	1	27319	27319		14.838	0.93222	1	1059700	+		54069	23994	39350	39664	52770	52770					-0.05866210007548034
TKEVNSGFFY	10	Unmodified	_TKEVNSGFFY_					0	0	0		nc|ENSG00000132141|Q92526-3|CCT6B	nc|ENSG00000132141|Q92526-3|CCT6B	nc|ENSG00000132141|Q92526-3|CCT6B	MULTI-MSMS	A375_MHC_IP_R1	1	596.687255859375	2	596.287671	1190.56079	-0.46017	-0.0002744	0.3622	0.00021597	-0.097975	-5.8421E-05	596.2878199142654	64.727	0.86368	64.727	64.191	65.055	0					43	16	4	0	0	0	0.13881	1	23367	23367		55.503	0	1	21057000			54070	14604	39351	39665	52771	52771					-0.026868821105153984
TKEVNSGFFY	10	Unmodified	_TKEVNSGFFY_					0	0	0		nc|ENSG00000132141|Q92526-3|CCT6B	nc|ENSG00000132141|Q92526-3|CCT6B	nc|ENSG00000132141|Q92526-3|CCT6B	MULTI-MSMS	A375_MHC_IP_R2	2	596.6875	2	596.287671	1190.56079	-0.49448	-0.00029485	0.43645	0.00026025	-0.05803	-3.4602E-05	596.2877232887064	63.883	0.71243	64.623	64.241	64.954	0.74022					42	13	4	0	0	0	0.064809	1	24207	24207		71.708	0	1	20193000			54071	14604	39351	39665	52772	52772					-0.026868821105153984
TKFGGIVVL	9	Unmodified	_TKFGGIVVL_					0	0	0		NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1;ENST00000587163.1_1_18:21113286-21114508:-|nuORF	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	467.69183349609375	2	467.292028	932.569503	-0.35711	-0.00016688	0.52136	0.00024363	0.16425	7.6751E-05	467.2921325197265	89.862	0.45462	89.862	89.577	90.032	0					15	8	3	0	0	0	0.32092	1	33050	33050		29.082	0.59474	1	876720			54072	5244	39352	39666	52773	52773					0.10052136316619453
TKFGGIVVL	9	Unmodified	_TKFGGIVVL_					0	0	0		NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1;ENST00000587163.1_1_18:21113286-21114508:-|nuORF	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	467.292028	932.569503	-0.56136	-0.00026232	-0.28589	-0.00013359	-0.84725	-0.00039591	467.291809257532	88.841	0.25441	89.573	89.431	89.685	0.7318	-0.1448	-0.00035661	NaN	29.082	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	853670			54073	5244	39352	39666							0.10052136316619453
TKFKIGPA	8	Unmodified	_TKFKIGPA_					0	0	0			REV__PLA2G4D|p.M57I|1|0.27|ENSG00000159337|chr15:42087384-42087384|C/T|missense_variant	REV__PLA2G4D|p.M57I|1|0.27|ENSG00000159337|chr15:42087384-42087384|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	431.28802490234375	2	431.263271	860.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.79	1	142.82	142.32	143.32	0.030731								0	0	0	0.16876	1	55818	55818		0.79363	0	1		+		54074	27793	39353	39667	52774	52774					0.07615294111042203
TKGDDKLQF	9	Unmodified	_TKGDDKLQF_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B	REV__ENSG00000168702|ENST00000389484|LRP1B	MULTI-SECPEP	A375_MHC_IP_R2	2	525.7028198242188	2	526.274564	1050.53457	-0.69509	-0.00036581	0.73005	0.0003842	0.034955	1.8396E-05	526.2750247299642	26.845	0.40973	27.505	27.313	27.722	0.65992					12	7	2	0	0	0	0.65246	1	9194	9194		15.847	4.2069	1	2266800	+		54075	20879	39354	39668	52775	52775					0.011328487179980584
TKGRRLLLF	9	Unmodified	_TKGRRLLLF_					0	0	0		ENST00000286353.8_2_3:141012052-141012157:+|nuORF	ENST00000286353.8_2_3:141012052-141012157:+|nuORF	ENST00000286353.8_2_3:141012052-141012157:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	368.9731140136719	3	368.573109	1102.6975	0.0047044	1.7339E-06	0.089279	3.2906E-05	0.093984	3.464E-05	368.5731216682627	49.967	0.76431	50.722	50.394	51.159	0.75406					42	14	4	0	0	0	0.3489	1	18749	18749		27.223	0	1	21852000			54076	10449	39355	39669	52776	52776					0.1502569663050508
TKGRYRVV	8	Unmodified	_TKGRYRVV_					0	0	0			REV__ENSG00000165118|ENST00000376344|C9orf64	REV__ENSG00000165118|ENST00000376344|C9orf64	MULTI-MSMS	A375_MHC_IP_R1	1	978.98388671875	1	978.584325	977.577048	-0.20526	-0.00020086	-0.67123	-0.00065686	-0.87649	-0.00085772	978.5836448604289	144.47	0.10818	144.47	144.4	144.51	0					6	4	2	0	0	0	0.77842	1	55406	55406		0.69038	0	1	346510	+		54077	20549	39356	39670	52777	52777					0.08736288636896461
TKHRRRGR	8	Unmodified	_TKHRRRGR_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	A375_MHC_IP_R1	1	356.263427734375	3	356.219952	1065.63803	-0.16323	-5.8145E-05	-1.0148	-0.00036148	-1.178	-0.00041963	356.553768925212	19.343	0.15193	19.343	19.268	19.42	0					4	2	2	0	0	0	0.7769	1	4749	4749		6.2058	0.013936	1	2430800	+		54078	22351	39357	39671	52778	52778					0.10783238459680433
TKKDITKL	8	Unmodified	_TKKDITKL_					0	0	0			REV__ENSG00000178913|ENST00000313368|TAF7	REV__ENSG00000178913|ENST00000313368|TAF7	MULTI-SECPEP	A375_MHC_IP_R1	1	474.19927978515625	2	473.800217	945.585882	-0.82343	-0.00039014	-0.63249	-0.00029967	-1.4559	-0.00068981	473.79969464649605	147.64	0.21065	147.64	147.54	147.75	0					36	19	2	0	0	0	0.972	1	56397	56397		0	0	1	338960	+		54079	21524	39358	39672	52779	52779					0.11091217482680804
TKKEARIAE	9	Unmodified	_TKKEARIAE_					0	0	0			REV__USHBP1|p.E209K|1|0.44|ENSG00000130307|chr19:17262569-17262569|C/T|missense_variant	REV__USHBP1|p.E209K|1|0.44|ENSG00000130307|chr19:17262569-17262569|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	523.703125	2	523.303655	1044.59276	-0.24111	-0.00012617	-0.40728	-0.00021313	-0.64839	-0.0003393	523.3033734205653	117.25	1.2694	117.25	116.29	117.56	0					45	24	2	0	0	0	0.70886	1	42991	42991		6.2058	0	1	20638000	+		54080	28964	39359	39673	52780	52780					0.07224530363282611
TKKELLCAI	9	Unmodified	_TKKELLCAI_					0	0	0			REV__ENSG00000145623|ENST00000274276|OSMR	REV__ENSG00000145623|ENST00000274276|OSMR	MSMS	A375_MHC_IP_R2	2	510.2030029296875	2	509.801903	1017.58925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.79	1	122.24	121.74	122.74	0.44488								0	0	0	0.15486	1	46626	46626		8.5933	0	1		+		54081	19482	39360	39674	52781	52781					0.08116144265068215
TKKELVRML	9	Unmodified	_TKKELVRML_					0	0	0			REV__nc|ENSG00000078177|Q86UW6-2|N4BP2	REV__nc|ENSG00000078177|Q86UW6-2|N4BP2	MULTI-SECPEP	A375_MHC_IP_R2	2	373.2780456542969	3	373.230243	1116.6689	0.38584	0.00014401	-1.2055	-0.00044995	-0.8197	-0.00030594	373.56437903848564	30.621	0.50365	31.34	31.013	31.517	0.71857					18	9	3	0	0	0	0.77901	1	10734	10734		3.5871	3.5871	1	1603000	+		54082	16706	39361	39675	52782	52782					0.11523210939049022
TKKEVLRF	8	Unmodified	_TKKEVLRF_					0	0	0			REV__ENST00000513111.1_1_3:123366069-123368027:-|nuORF	REV__ENST00000513111.1_1_3:123366069-123368027:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	511.21331787109375	2	510.813659	1019.61277	-0.48098	-0.00024569	0.25061	0.00012802	-0.23037	-0.00011768	510.8138037928712	43.934	0.40671	43.934	43.706	44.113	0					14	7	3	0	0	0	0.9187	1	15318	15318		25.399	9.2502	1	3098600	+		54083	16501	39362	39676	52783	52783					0.10374326093892705
TKKIKKIKI	9	Unmodified	_TKKIKKIKI_					0	0	0		LTBP2|p.E346K|1|0.44|ENSG00000119681|chr14:74553048-74553048|C/T|missense_variant	LTBP2|p.E346K|1|0.44|ENSG00000119681|chr14:74553048-74553048|C/T|missense_variant	LTBP2|p.E346K|1|0.44|ENSG00000119681|chr14:74553048-74553048|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	367.2675476074219	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.703	1	21.703	21.203	22.203	0								0	0	0	0.15486	1	5743	5743		0	0	1				54084	14328	39363	39677	52784	52784					0.23980897501246545
TKKKAGAK	8	Unmodified	_TKKKAGAK_					0	0	0		tr|U7SNG8|U7SNG8_FUSNUCitratelyasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01986PE=4SV=1	tr|U7SNG8|U7SNG8_FUSNUCitratelyasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01986PE=4SV=1	tr|U7SNG8|U7SNG8_FUSNUCitratelyasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01986PE=4SV=1	MSMS	A375_MHC_IP_R2	2	416.2787780761719	2	416.27417	830.533787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.671	1	24.301	23.801	24.801	0.63014								0	0	0	0.16876	1	7658	7658		7.9102	0	1				54085	29551	39364	39678	52785	52785					0.11174098859601145
TKKKAGKKTK	10	Unmodified	_TKKKAGKKTK_					0	0	0			REV__MRPL1|p.E59K|1|0.46|ENSG00000169288|chr4:77883273-77883273|G/A|missense_variant	REV__MRPL1|p.E59K|1|0.46|ENSG00000169288|chr4:77883273-77883273|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	559.7733764648438	2	559.374415	1116.73428	-0.85699	-0.00047938	-0.40864	-0.00022858	-1.2656	-0.00070796	559.3741548448223	147.31	0.19484	147.31	147.22	147.41	0					40	22	2	0	0	0	0.72747	1	56293	56293		0	0	1	252480	+		54086	27037	39365	39679	52786	52786					0.1805794845638502
TKKKILYKQYI	11	Unmodified	_TKKKILYKQYI_					0	0	0		ENST00000437176.5_1_14:75936668-75936947:+|nuORF	ENST00000437176.5_1_14:75936668-75936947:+|nuORF	ENST00000437176.5_1_14:75936668-75936947:+|nuORF	MSMS	A375_MHC_IP_R2	2	713.7500610351562	2	713.445037	1424.87552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.11	1	144.14	143.64	144.64	0.024414								0	0	0	0.16354	1	56302	56302		0.30703	0.30703	1				54087	11937	39366	39680	52787	52787					0.18007902039039436
TKKKKEEKA	9	Unmodified	_TKKKKEEKA_					0	0	0			REV__nc|ENSG00000115155|Q9HC10-4|OTOF	REV__nc|ENSG00000115155|Q9HC10-4|OTOF	MULTI-SECPEP	A375_MHC_IP_R1	1	364.2923583984375	3	363.892396	1088.65536	-0.11924	-4.3391E-05	0.22692	8.2575E-05	0.10768	3.9184E-05	363.89236126680584	137.81	0.71591	137.81	137.64	138.36	0					27	13	4	0	0	0	0.81724	1	53037	53037		0.96228	0	1	3073600	+		54088	17857	39367	39681	52788	52788					0.11457676431473374
TKKKKEEKA	9	Unmodified	_TKKKKEEKA_					0	0	0			REV__nc|ENSG00000115155|Q9HC10-4|OTOF	REV__nc|ENSG00000115155|Q9HC10-4|OTOF	MULTI-MATCH	A375_MHC_IP_R2	2		3	363.892396	1088.65536	0.14362	5.2263E-05	-0.1073	-3.9047E-05	0.036319	1.3216E-05	363.8922521876668	137.76	0.96202	137.84	137.66	138.62	0.083954	0.014617	-0.00017536	NaN	0.96228	33	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3421600	+		54089	17857	39367	39681							0.11457676431473374
TKKKKKGKKGK	11	Unmodified	_TKKKKKGKKGK_					0	0	0		nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX;nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX	nc|ENSG00000085224|P46100-4|ATRX	nc|ENSG00000085224|P46100-4|ATRX	MSMS	A375_MHC_IP_R1	1	630.011962890625	2	629.937714	1257.86087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.753	1	97.753	97.253	98.253	0								0	0	0	0.1636	1	35913	35913		0	0	1				54090	1808	39368	39682	52789	52789					0.242258746815196
TKKKKKKKKTW	11	Unmodified	_TKKKKKKKKTW_					0	0	0		AluJb_dup53617|chr8:11864197-11864505:+|1.1599310112494683|0.1824579183855656|2.67|471.0|8|3|sense	AluJb_dup53617|chr8:11864197-11864505:+|1.1599310112494683|0.1824579183855656|2.67|471.0|8|3|sense	AluJb_dup53617|chr8:11864197-11864505:+|1.1599310112494683|0.1824579183855656|2.67|471.0|8|3|sense	MSMS	A375_MHC_IP_R2	2	716.8539428710938	2	716.479746	1430.94494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.37	1	144.39	143.89	144.89	0.024414								0	0	0	0.16355	1	56395	56395		0.26902	0.26902	1				54091	109	39369	39683	52790	52790					0.24670405778442728
TKKRKRRRRRS	11	Unmodified	_TKKRKRRRRRS_					0	0	0		nc|ENSG00000028310|Q9H8M2-6|BRD9;ENST00000467963.5_3_5:889215-891867:-|nuORF	nc|ENSG00000028310|Q9H8M2-6|BRD9;ENST00000467963.5_3_5:889215-891867:-|nuORF	nc|ENSG00000028310|Q9H8M2-6|BRD9	MSMS	A375_MHC_IP_R1	1	764.6061401367188	2	764.49819	1526.98183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.18	1	125.18	124.68	125.68	0								0	0	0	0.1636	1	47483	47483		0	0	1				54092	14458;12292	39370	39684	52791	52791					0.23941515167575744
TKKRRDFYEKY	11	Unmodified	_TKKRRDFYEKY_					0	0	0		nc|ENSG00000113391|Q8WUF8-4|ARB2A;nc|ENSG00000113391|Q8WUF8-3|ARB2A;ENSG00000113391|ENST00000395965|FAM172A;nc|ENSG00000113391|Q8WUF8-2|ARB2A;ENST00000506398.6_1_5:93217085-93410459:-|nuORF	nc|ENSG00000113391|Q8WUF8-4|ARB2A	nc|ENSG00000113391|Q8WUF8-4|ARB2A	MULTI-MSMS	A375_MHC_IP_R1	1	769.361572265625	2	767.412257	1532.80996	-0.29685	-0.00022781	-0.49679	-0.00038124	-0.79363	-0.00060904	767.4117515050442	92.383	0.61012	92.383	92.007	92.617	0					31	11	4	0	0	0	0.73672	1	33949	33949		2.4985	2.1915	1	14268000			54093	3148	39371	39685	52792	52792					0.06486880846023269
TKKRRDFYEKY	11	Unmodified	_TKKRRDFYEKY_					0	0	0		nc|ENSG00000113391|Q8WUF8-4|ARB2A;nc|ENSG00000113391|Q8WUF8-3|ARB2A;ENSG00000113391|ENST00000395965|FAM172A;nc|ENSG00000113391|Q8WUF8-2|ARB2A;ENST00000506398.6_1_5:93217085-93410459:-|nuORF	nc|ENSG00000113391|Q8WUF8-4|ARB2A	nc|ENSG00000113391|Q8WUF8-4|ARB2A	MULTI-MSMS	A375_MHC_IP_R2	2	768.3129272460938	2	767.412257	1532.80996	-0.83101	-0.00063773	-0.74033	-0.00056814	-1.5713	-0.0012059	767.4116539716931	91.616	0.55905	92.351	92.071	92.63	0.7345					29	10	4	0	0	0	0.7039	1	34817	34817		15.248	14.055	1	15389000			54094	3148	39371	39685	52793	52793					0.06486880846023269
TKLDQAQSE	9	Unmodified	_TKLDQAQSE_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MSMS	A375_MHC_IP_R1	1	510.19964599609375	2	510.253828	1018.4931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.469	1	41.469	40.969	41.969	0								0	0	0	0.14767	1	14317	14317		25.399	0	1		+		54095	21096	39372	39686	52794	52794					-0.015403320413270194
TKLEVKKIPQ	10	Unmodified	_TKLEVKKIPQ_					0	0	0		ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	MULTI-MSMS	A375_MHC_IP_R2	2	592.4415283203125	2	592.374081	1182.73361	-0.37549	-0.00022243	0.19738	0.00011692	-0.17811	-0.00010551	592.3740721974787	149.5	2.4303	149.52	147.58	150.01	0.01825					329	101	5	0	0	0	0.72658	1	57514	57514		0.40072	0	1	4213000			54096	1967	39373	39687	52795	52795					0.14955109016705137
TKLPEYTR	8	Unmodified	_TKLPEYTR_					0	0	0		ENSG00000182896|ENST00000576060|TMEM95;nc|ENSG00000182896|Q3KNT9-2|TMEM95;nc|ENSG00000182896|Q3KNT9-3|TMEM95	ENSG00000182896|ENST00000576060|TMEM95	ENSG00000182896|ENST00000576060|TMEM95	MULTI-MSMS	A375_MHC_IP_R2	2	504.6796875	2	504.279649	1006.54475	-0.8176	-0.0004123	0.1991	0.0001004	-0.6185	-0.0003119	504.28007347316577	72.377	0.65818	73.112	72.821	73.48	0.73541					18	12	2	0	0	0	0.74466	1	27492	27492		21.747	1.293	1	1498600			54097	8445	39374	39688	52796	52796					0.041734564432204024
TKLSIKPAF	9	Unmodified	_TKLSIKPAF_					0	0	0		KLRD1|p.E41K|1|0.46|ENSG00000134539|chr12:10309646-10309646|G/A|missense_variant	KLRD1|p.E41K|1|0.46|ENSG00000134539|chr12:10309646-10309646|G/A|missense_variant	KLRD1|p.E41K|1|0.46|ENSG00000134539|chr12:10309646-10309646|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	503.2097473144531	2	502.810585	1003.60662	-0.46516	-0.00023389	-0.6551	-0.00032939	-1.1203	-0.00056328	502.8102951530879	44.088	0.45482	44.858	44.53	44.985	0.7691					14	8	2	0	0	0	0.36834	1	16455	16455		26.268	5.8536	1	2471800			54098	14230	39375	39689	52797	52797					0.10495807862378115
TKLSIKPAF	9	Unmodified	_TKLSIKPAF_					0	0	0		KLRD1|p.E41K|1|0.46|ENSG00000134539|chr12:10309646-10309646|G/A|missense_variant	KLRD1|p.E41K|1|0.46|ENSG00000134539|chr12:10309646-10309646|G/A|missense_variant	KLRD1|p.E41K|1|0.46|ENSG00000134539|chr12:10309646-10309646|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	502.810585	1003.60662	0.1788	8.9902E-05	-1.2553	-0.00063119	-1.0765	-0.00054128	502.81033814778556	44.976	0.4571	44.976	44.777	45.234	0	0.059046	-0.00050582	NaN	26.268	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1605800			54099	14230	39375	39689							0.10495807862378115
TKLWQKETLS	10	Unmodified	_TKLWQKETLS_					0	0	0			REV__ENST00000585799.5_1_19:11132109-11172489:+|nuORF	REV__ENST00000585799.5_1_19:11132109-11172489:+|nuORF	MSMS	A375_MHC_IP_R1	1	411.6340026855469	3	411.899439	1232.67649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.057	1	47.057	46.557	47.557	0								0	0	0	0.15309	1	16539	16539		6.6235	0	1		+		54100	26380	39376	39690	52798	52798					0.06945641740321662
TKMKETLHEV	10	Unmodified	_TKMKETLHEV_					0	0	0			REV__nc|ENSG00000067057|Q01813-2|PFKP	REV__nc|ENSG00000067057|Q01813-2|PFKP	MULTI-MSMS	A375_MHC_IP_R1	1	405.952392578125	3	405.884913	1214.63291	-0.37914	-0.00015389	0.70562	0.0002864	0.32648	0.00013251	406.2189322552647	31.313	0.65693	31.313	30.908	31.565	0					24	12	3	0	0	0	0.62155	1	10045	10045		12.175	2.4105	1	3485200	+		54101	16527	39377	39691	52799	52799					0.03417708971551292
TKNKWSHI	8	Unmodified	_TKNKWSHI_					0	0	0		ENST00000341618.8_2_21:30547632-30547791:+|nuORF	ENST00000341618.8_2_21:30547632-30547791:+|nuORF	ENST00000341618.8_2_21:30547632-30547791:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	507.98046875	2	507.279983	1012.54541	-0.55613	-0.00028211	2.1526	0.001092	1.5965	0.00080987	507.782829973229	47.235	0.45879	47.996	47.715	48.174	0.76128					11	8	2	0	0	0	0.972	1	17626	17626		7.9102	7.1165	1	3075800			54102	10870	39378	39692	52800	52800					0.03964295882940405
TKPAIIFRI	9	Unmodified	_TKPAIIFRI_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;HCFC1|p.A1984V|1|0.95|ENSG00000172534|chrX:153950296-153950296|G/A|missense_variant	nc|ENSG00000172534|P51610-2|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	MULTI-MSMS	A375_MHC_IP_R2	2	353.96209716796875	3	353.56221	1057.6648	-0.13417	-4.7437E-05	-0.027213	-9.6215E-06	-0.16138	-5.7059E-05	353.5620953331448	67.986	0.76245	68.721	68.409	69.171	0.73511					29	14	3	0	0	0	0.16286	1	25762	25762		40.725	21.363	1	2965100			54103	7719	39379	39693	52801	52801					0.13827489507661994
TKPCIDSFLQ	10	Unmodified	_TKPCIDSFLQ_					0	0	0			REV__ENSG00000114857|ENST00000232978|NKTR	REV__ENSG00000114857|ENST00000232978|NKTR	MSMS	A375_MHC_IP_R1	1	576.2427368164062	2	576.291899	1150.56925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.61	1	128.61	128.11	129.11	0								0	0	0	0.15465	1	49412	49412		5.7319	0	1		+		54104	17844	39380	39694	52802	52802					-1.6514655499122455E-05
TKPDLIFKL	9	Unmodified	_TKPDLIFKL_					0	0	0		ZNF26|p.Q440Hfs*9|1|0.28|ENSG00000198393|chr12:133011198-133011205|AGCTGATT/-|frameshift_variant;ENSG00000198393|ENST00000328654|ZNF26	ZNF26|p.Q440Hfs*9|1|0.28|ENSG00000198393|chr12:133011198-133011205|AGCTGATT/-|frameshift_variant	ZNF26|p.Q440Hfs*9|1|0.28|ENSG00000198393|chr12:133011198-133011205|AGCTGATT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	359.2898254394531	3	358.890104	1073.64848	0.11894	4.2686E-05	-0.42623	-0.00015297	-0.30729	-0.00011028	358.8898936636761	73.158	0.96455	73.158	72.625	73.589	0					31	18	2	0	0	0	0.58268	1	26598	26598		15.739	0	1	3204800			54105	9264	39381	39695	52803	52803					0.11460363550895636
TKPDLIFKL	9	Unmodified	_TKPDLIFKL_					0	0	0		ZNF26|p.Q440Hfs*9|1|0.28|ENSG00000198393|chr12:133011198-133011205|AGCTGATT/-|frameshift_variant;ENSG00000198393|ENST00000328654|ZNF26	ZNF26|p.Q440Hfs*9|1|0.28|ENSG00000198393|chr12:133011198-133011205|AGCTGATT/-|frameshift_variant	ZNF26|p.Q440Hfs*9|1|0.28|ENSG00000198393|chr12:133011198-133011205|AGCTGATT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	359.2895812988281	3	358.890104	1073.64848	-0.43205	-0.00015506	-0.3296	-0.00011829	-0.76166	-0.00027335	358.88993159213595	72.01	0.86208	72.744	72.414	73.276	0.73421					38	16	3	0	0	0	0.48411	1	27334	27334		20.581	0	1	3533700			54106	9264	39381	39695	52804	52804					0.11460363550895636
TKPKEKIKNET	11	Unmodified	_TKPKEKIKNET_					0	0	0			REV__tr|U7SU47|U7SU47_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01305PE=4SV=1	REV__tr|U7SU47|U7SU47_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01305PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	658.8131103515625	2	658.382634	1314.75072	-0.84185	-0.00055426	-0.088181	-5.8057E-05	-0.93004	-0.00061232	658.3823908666843	149.22	1.9333	149.22	148.07	150	0					166	61	4	0	0	0	0.73833	1	56988	56988		0.96228	0	1	634220	+		54107	28531	39382	39696	52805	52805					0.1059298483182829
TKPKEKIKNET	11	Unmodified	_TKPKEKIKNET_					0	0	0			REV__tr|U7SU47|U7SU47_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01305PE=4SV=1	REV__tr|U7SU47|U7SU47_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01305PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	658.382634	1314.75072	-0.72944	-0.00048025	-0.21428	-0.00014108	-0.94371	-0.00062132	658.3823509615054	149.29	1.7616	149.31	148.25	150.01	0.01825	0.04397	-6.2039E-05	NaN	0.96228	177	64	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	655530	+		54108	28531	39382	39696							0.1059298483182829
TKPKSKTQK	9	Unmodified	_TKPKSKTQK_					0	0	0		nc|ENSG00000101311|Q9BQL6-4|FERMT1	nc|ENSG00000101311|Q9BQL6-4|FERMT1	nc|ENSG00000101311|Q9BQL6-4|FERMT1	MULTI-MSMS	A375_MHC_IP_R2	2	523.7216796875	2	523.321848	1044.62914	-0.36467	-0.00019084	-0.27513	-0.00014398	-0.63979	-0.00033482	523.3216165266026	137.14	1.63	137.25	137.02	138.65	0.11134					76	31	4	0	0	0	0.75764	1	53820	53820		1.8442	0	1	45748000			54109	14515	39383	39697	52806	52806					0.10861407259972111
TKPKTITKEF	10	Unmodified	_TKPKTITKEF_					0	0	0			REV__tr|U7T3J7|U7T3J7_FUSNUEthanolamineutilizationproteinEutJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00330PE=3SV=1	REV__tr|U7T3J7|U7T3J7_FUSNUEthanolamineutilizationproteinEutJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00330PE=3SV=1	MSMS	A375_MHC_IP_R2	2	596.7545776367188	2	596.850438	1191.68632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.17	1	139.23	138.73	139.73	0.059906								0	0	0	0.15465	1	54539	54539		5.7319	2.1354	1		+		54110	28778	39384	39698	52807	52807					0.09814829745687348
TKPYLLPV	8	Unmodified	_TKPYLLPV_					0	0	0		ENST00000230122.3_1_6:109803036-109803096:-|nuORF	ENST00000230122.3_1_6:109803036-109803096:-|nuORF	ENST00000230122.3_1_6:109803036-109803096:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	466.1867980957031	2	465.786579	929.558604	-0.58984	-0.00027474	0.85505	0.00039827	0.26521	0.00012353	465.78692523534295	133.01	0.1519	133.17	133.09	133.25	0.16487					4	2	2	0	0	0	0.77797	1	52356	52356		2.3027	0	1	3090700			54111	10139	39385	39699	52808	52808					0.09100733942341321
TKPYLLPV	8	Unmodified	_TKPYLLPV_					0	0	0		ENST00000230122.3_1_6:109803036-109803096:-|nuORF	ENST00000230122.3_1_6:109803036-109803096:-|nuORF	ENST00000230122.3_1_6:109803036-109803096:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	465.786579	929.558604	-0.58984	-0.00027474	0.85505	0.00039827	0.26521	0.00012353	465.78692523534295	133.01	0.1519	133.17	133.09	133.25	0.16487	-0.019763	0.00044453	NaN	2.3027	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3090700			54112	10139	39385	39699							0.09100733942341321
TKQITEKE	8	Unmodified	_TKQITEKE_					0	0	0			REV__nc|ENSG00000110841|Q86W92-3|PPFIBP1	REV__nc|ENSG00000110841|Q86W92-3|PPFIBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	488.2051696777344	2	488.769114	975.523675	-0.1208	-5.9045E-05	1.0388	0.00050773	0.91799	0.00044868	488.7696200706782	39.27	0.40845	39.27	38.983	39.391	0					17	7	3	0	0	0	0.97021	1	13411	13411		15.847	0	1	2422700	+		54113	17643	39386	39700	52809	52809					0.03493446343713913
TKRKGNIKY	9	Unmodified	_TKRKGNIKY_					0	0	0			REV__ENST00000531894.5_1_16:70011782-70023933:-|nuORF	REV__ENST00000531894.5_1_16:70011782-70023933:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	370.2487487792969	3	369.892619	1106.65603	0.20339	7.5231E-05	0.89079	0.0003295	1.0942	0.00040473	369.89316997667464	19.598	0.50868	19.598	19.318	19.827	0					12	8	2	0	0	0	0.70886	1	4893	4893		3.8763	0	1	1510600	+		54114	25860	39387	39701	52810	52810					0.10696515871177326
TKRRKKKTPV	10	Unmodified	_TKRRKKKTPV_					0	0	0			REV__ENSG00000011201|ENST00000262648|ANOS1	REV__ENSG00000011201|ENST00000262648|ANOS1	MSMS	A375_MHC_IP_R2	2	621.478759765625	2	621.411863	1240.80917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.534	1	85.27	84.77	85.77	0.73601								0	0	0	0.15628	1	32135	32135		0.45834	0	1		+		54115	16204	39388	39702	52811	52811					0.1984013098763171
TKRRQSINLAG	11	Unmodified	_TKRRQSINLAG_					0	0	0			REV__nc|ENSG00000152520|Q58A45-3|PAN3	REV__nc|ENSG00000152520|Q58A45-3|PAN3	MULTI-MSMS	A375_MHC_IP_R1	1	415.287353515625	3	415.245832	1242.71567	0.15701	6.5197E-05	1.7119	0.00071086	1.8689	0.00077606	415.2465354724506	19.469	0.38484	19.469	19.238	19.623	0					14	7	4	0	0	0	0.73557	1	4686	4686		3.5927	0.27303	1	4469900	+		54116	27292	39389	39703	52812	52812					0.10401786814554725
TKSEINYVI	9	Unmodified	_TKSEINYVI_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-SECPEP	A375_MHC_IP_R2	2	356.9254455566406	3	356.197485	1065.57063	-0.23911	-8.5171E-05	0.22879	8.1494E-05	-0.010321	-3.6763E-06	356.19760659495046	27.139	0.20415	27.818	27.741	27.945	0.67857					7	3	3	0	0	0	0.67483	1	9228	9228		6.6304	0	1	1184400	+		54117	22683	39390	39704	52813	52813					0.04046305894826219
TKSFLQYPF	9	Unmodified	_TKSFLQYPF_					0	0	0			REV__ENSG00000139144|ENST00000538779|PIK3C2G	REV__ENSG00000139144|ENST00000538779|PIK3C2G	MSMS	A375_MHC_IP_R2	2	565.7068481445312	2	565.797675	1129.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.669	1	62.414	61.914	62.914	0.74503								0	0	0	0.14677	1	23374	23374		26.884	3.7352	1		+		54118	19135	39391	39705	52814	52814					0.02118913620074636
TKSGQSKGGIL	11	Unmodified	_TKSGQSKGGIL_					0	0	0		ENSG00000158773|ENST00000368021|USF1;nc|ENSG00000158773|P22415-2|USF1	ENSG00000158773|ENST00000368021|USF1	ENSG00000158773|ENST00000368021|USF1	MULTI-MSMS	A375_MHC_IP_R2	2	538.7086791992188	2	538.308938	1074.60332	-0.92517	-0.00049803	-0.6007	-0.00032336	-1.5259	-0.00082139	538.3086754657372	128.74	0.60791	128.98	128.65	129.26	0.23946					18	11	2	0	0	0	0.72649	1	50641	50641		12.241	12.241	1	5774300			54119	6328	39392	39706	52815	52815					0.06900513017717458
TKSGQSKGGIL	11	Unmodified	_TKSGQSKGGIL_					0	0	0		ENSG00000158773|ENST00000368021|USF1;nc|ENSG00000158773|P22415-2|USF1	ENSG00000158773|ENST00000368021|USF1	ENSG00000158773|ENST00000368021|USF1	MULTI-MATCH	A375_MHC_IP_R1	1		2	538.308938	1074.60332	-0.70789	-0.00038106	-0.25961	-0.00013975	-0.96751	-0.00052082	538.3088832130818	128.91	0.51094	128.91	128.63	129.14	0	-0.034998	0.00021795	NaN	12.241	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5192700			54120	6328	39392	39706							0.06900513017717458
TKSGQSKGGIL	11	Unmodified	_TKSGQSKGGIL_					0	0	0		ENSG00000158773|ENST00000368021|USF1;nc|ENSG00000158773|P22415-2|USF1	ENSG00000158773|ENST00000368021|USF1	ENSG00000158773|ENST00000368021|USF1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	538.308938	1074.60332	-0.92517	-0.00049803	-0.6007	-0.00032336	-1.5259	-0.00082139	538.3086754657372	128.74	0.60791	128.98	128.65	129.26	0.23946	0.034998	-0.00014927	NaN	12.241	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5774300			54121	6328	39392	39706							0.06900513017717458
TKSLMAKLS	9	Unmodified	_TKSLMAKLS_					0	0	0		nc|ENSG00000110841|Q86W92-3|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	MSMS	A375_MHC_IP_R2	2	489.7218322753906	2	489.786253	977.557952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.316	1	84.056	83.556	84.556	0.73962								0	0	0	0.15135	1	31667	31667		19.362	1.2156	1				54122	14540	39393	39707	52816	52816					0.06827571230962803
TKSNKRLDIA	10	Unmodified	_TKSNKRLDIA_					0	0	0			REV__tr|U7SNT5|U7SNT5_FUSNUdTDP-4-dehydrorhamnose3,5-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01943PE=3SV=1	REV__tr|U7SNT5|U7SNT5_FUSNUdTDP-4-dehydrorhamnose3,5-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01943PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	382.2995300292969	3	382.559417	1144.65642	0.47998	0.00018362	-0.26347	-0.00010079	0.21651	8.2828E-05	382.89357884176184	20.818	0.56287	20.818	20.485	21.048	0					12	10	2	0	0	0	0.93999	1	5290	5290		4.7159	4.7159	1	1093700	+		54123	28340	39394	39708	52817	52817					0.08987890800381138
TKTEILKKELL	11	Unmodified	_TKTEILKKELL_					0	0	0		nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-MSMS	A375_MHC_IP_R2	2	658.8133544921875	2	658.413403	1314.81225	-0.72883	-0.00047987	0.088394	5.82E-05	-0.64044	-0.00042167	658.4133474492187	149.23	2.4803	149.25	147.53	150.01	0.018616					432	106	6	0	0	0	0.73934	2	57394	57394;57464		0	0	1	10670000			54124	6631	39395	39709	52818;52819	52818					0.16743916531140712
TKTEILKKELL	11	Unmodified	_TKTEILKKELL_					0	0	0		nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	658.413403	1314.81225	-0.84269	-0.00055484	0.10165	6.6931E-05	-0.74104	-0.00048791	658.4133457696586	149.21	2.5413	149.21	147.46	150	0	-0.019764	9.0356E-06	NaN	0	396	103	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12164000			54125	6631	39395	39709							0.16743916531140712
TKTFEGLGVY	10	Unmodified	_TKTFEGLGVY_					0	0	0			REV__tr|U7SUG6|U7SUG6_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01415PE=3SV=1	REV__tr|U7SUG6|U7SUG6_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01415PE=3SV=1	MSMS	A375_MHC_IP_R1	1	557.7643432617188	2	557.792589	1113.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.187	1	87.187	86.687	87.687	0								0	0	0	0.15353	1	31987	31987		9.3831	0.035688	1		+		54126	28557	39396	39710	52820	52820					0.018383058948757025
TKTIISAHSK	10	Unmodified	_TKTIISAHSK_					0	0	0		tr|U7T5X5|U7T5X5_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00007PE=3SV=1	tr|U7T5X5|U7T5X5_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00007PE=3SV=1	tr|U7T5X5|U7T5X5_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00007PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	362.46771240234375	3	362.548629	1084.62406	0.59084	0.00021421	-2.0109	-0.00072904	-1.42	-0.00051483	362.5481925353656	48.61	0.50544	48.61	48.325	48.831	0					16	8	3	0	0	0	0.70565	1	17107	17107		9.7643	2.2872	1	1855500			54127	30036	39397	39711	52821	52821					0.08513103397376653
TKTLLENKF	9	Unmodified	_TKTLLENKF_					0	0	0			REV__nc|ENSG00000186462|Q9ULW6-2|NAP1L2	REV__nc|ENSG00000186462|Q9ULW6-2|NAP1L2	MULTI-SECPEP	A375_MHC_IP_R2	2	546.6712646484375	2	547.316232	1092.61791	-1.2875	-0.00070469	-0.12377	-6.7743E-05	-1.4113	-0.00077243	547.3164048395506	33.626	0.30369	34.378	34.196	34.5	0.75225					10	5	3	0	0	0	0.71341	1	12049	12049		5.2969	2.5617	1	1774700	+		54128	21971	39398	39712	52822	52822					0.0753058516584133
TKVLNHAT	8	Unmodified	_TKVLNHAT_					0	0	0			REV__nc|ENSG00000143921|Q9H221-2|ABCG8	REV__nc|ENSG00000143921|Q9H221-2|ABCG8	MULTI-MSMS	A375_MHC_IP_R1	1	442.6534423828125	2	442.253434	882.492316	-0.46119	-0.00020396	0.042887	1.8967E-05	-0.4183	-0.000185	442.25342136303277	41.44	1.1187	41.44	40.963	42.082	0					55	21	4	0	0	0	0.77602	1	14486	14486		9.3831	0	1	63481000	+		54129	19397	39399	39713	52823	52823					0.046369181002773985
TKVLVVQQSL	10	Unmodified	_TKVLVVQQSL_					0	0	0			REV__ENST00000493637.6_1_X:134704384-134704540:+|nuORF	REV__ENST00000493637.6_1_X:134704384-134704540:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	372.9521484375	3	372.23253	1113.67576	0.4226	0.0001573	-2.5918	-0.00096475	-2.1692	-0.00080745	372.56505114898226	32.352	0.40807	33.089	32.857	33.265	0.73691					16	7	3	0	0	0	0.92199	1	11420	11420		14.957	0	1	1802400	+		54130	25424	39400	39714	52824	52824					0.12346847091271229
TKVVMCEKL	9	Unmodified	_TKVVMCEKL_					0	0	0			REV__PIP|p.E61K|1|0.39|ENSG00000159763|chr7:143135279-143135279|G/A|missense_variant	REV__PIP|p.E61K|1|0.39|ENSG00000159763|chr7:143135279-143135279|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	525.70263671875	2	525.787938	1049.56132	-0.91446	-0.00048081	0.19814	0.00010418	-0.71632	-0.00037663	525.7878566826629	29.49	0.547	29.49	29.201	29.748	0					16	10	3	0	0	0	0.60917	1	9120	9120		25.399	3.6527	1	20242000	+		54131	20134	39401	39715	52825	52825					0.03852498013316108
TKWPKFFF	8	Unmodified	_TKWPKFFF_					0	0	0		ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	MULTI-SECPEP	A375_MHC_IP_R1	1	367.9363098144531	3	367.535772	1099.58549	-0.06451	-2.371E-05	1.3784	0.00050662	1.3139	0.00048291	367.5363218068487	26.399	0.35416	26.399	26.17	26.524	0					10	6	2	0	0	0	0.972	1	7856	7856		5.7319	5.7319	1	3739800			54132	8595	39402	39716	52826	52826					0.03967842553515766
TKYFNPHY	8	Unmodified	_TKYFNPHY_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76435259-76454697:-|nuORF	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	A375_MHC_IP_R1	1	534.6848754882812	2	535.258717	1068.50288	-0.8047	-0.00043072	-3.9766	-0.0021285	-4.7813	-0.0025592	535.7590553210251	27.571	0.3541	27.571	27.432	27.786	0					11	6	2	0	0	0	0.97144	1	8410	8410		0.6015	0	1	2004500			54133	8855	39403	39717	52827	52827					-0.02863099245291778
TKYGLGDRYFK	11	Unmodified	_TKYGLGDRYFK_					0	0	0			REV__tr|U7STD9|U7STD9_FUSNUVOCdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01023PE=4SV=1	REV__tr|U7STD9|U7STD9_FUSNUVOCdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01023PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	675.2860107421875	2	674.356419	1346.69829	-0.87201	-0.00058805	-0.34854	-0.00023504	-1.2206	-0.00082309	674.3559926772169	131.7	1.2084	131.7	131.18	132.38	0					56	23	3	0	0	0	0.73135	2	50882	50882;50993		7.609	1.8771	1	13648000	+		54134	28479	39404	39718	52828;52829	52828					0.038804464888926304
TKYGLGDRYFK	11	Unmodified	_TKYGLGDRYFK_					0	0	0			REV__tr|U7STD9|U7STD9_FUSNUVOCdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01023PE=4SV=1	REV__tr|U7STD9|U7STD9_FUSNUVOCdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01023PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	675.2860717773438	2	674.356419	1346.69829	-0.68549	-0.00046226	-0.2596	-0.00017506	-0.94509	-0.00063733	674.3561351937283	131.59	1.1659	131.78	131.24	132.4	0.18954					54	22	3	0	0	0	0.73135	2	51664	51664;51903		7.609	0.50723	1	15430000	+		54135	28479	39404	39718	52830;52831	52830					0.038804464888926304
TKYPTNRGL	9	Unmodified	_TKYPTNRGL_					0	0	0			REV__nc|ENSG00000136754|Q8IZP0-11|ABI1	REV__nc|ENSG00000136754|Q8IZP0-11|ABI1	MULTI-MSMS	A375_MHC_IP_R2	2	525.6890258789062	2	525.290548	1048.56654	-0.47529	-0.00024967	-1.762	-0.00092556	-2.2373	-0.0011752	525.2891904094047	131.08	1.0177	131.3	131.06	132.08	0.2142					27	19	3	0	0	0	0.61998	1	51569	51569		13.906	0	1	6155400	+		54136	18956	39405	39719	52832	52832					0.044202611917853574
TKYQVWEWLQH	11	Unmodified	_TKYQVWEWLQH_					0	0	0		nc|ENSG00000135373|Q9NZC4-2|EHF;ENSG00000135373|ENST00000257831|EHF;nc|ENSG00000135373|Q9NZC4-3|EHF	nc|ENSG00000135373|Q9NZC4-2|EHF	nc|ENSG00000135373|Q9NZC4-2|EHF	MSMS	A375_MHC_IP_R2	2	506.6582946777344	3	506.589376	1516.7463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.657	1	38.432	37.932	38.932	0.77451								0	0	0	0.16309	1	13795	13795		2.6312	1.3016	1				54137	4677	39406	39720	52833	52833					0.008595204089488107
TKYVFYTYIQT	11	Unmodified	_TKYVFYTYIQT_					0	0	0			REV__ENSG00000025796|ENST00000369002|SEC63	REV__ENSG00000025796|ENST00000369002|SEC63	MULTI-MSMS	A375_MHC_IP_R1	1	714.771240234375	2	713.866285	1425.71802	-0.60653	-0.00043298	3.2347	0.0023092	2.6282	0.0018762	714.3703199689534	54.989	0.66093	54.989	54.567	55.228	0					27	12	4	0	0	0	0.67565	1	19685	19685		17.443	2.1942	1	5318100	+		54138	16288	39407	39721	52834	52834					0.022187777090039162
TLACRREQDES	11	Unmodified	_TLACRREQDES_					0	0	0			REV__ENST00000597244.1_1_19:16688878-16689301:-|nuORF	REV__ENST00000597244.1_1_19:16688878-16689301:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	436.6712341308594	3	436.538464	1306.59356	-0.75014	-0.00032747	-0.98607	-0.00043046	-1.7362	-0.00075792	436.5382136022611	53.728	1.2234	54.479	54.097	55.32	0.75105					66	23	5	0	0	0	0.99227	1	20533	20533		1.2148	0	1	105720000	+		54139	26478	39408	39722	52835	52835					-0.04747043049997046
TLADALTYI	9	Unmodified	_TLADALTYI_					0	0	0		tr|U7SMK9|U7SMK9_FUSNUProbablecytosolaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pepAPE=3SV=1	tr|U7SMK9|U7SMK9_FUSNUProbablecytosolaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pepAPE=3SV=1	tr|U7SMK9|U7SMK9_FUSNUProbablecytosolaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pepAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	490.65667724609375	2	490.768583	979.522613	-0.44947	-0.00022059	0.014811	7.2689E-06	-0.43466	-0.00021332	490.76846782973826	89.586	0.86246	90.317	89.836	90.699	0.7318					31	16	3	0	0	0	0.46038	1	33955	33955		21.747	4.8044	1	3527700			54140	29531	39409	39723	52836	52836					0.032032319747941074
TLADIIIGI	9	Unmodified	_TLADIIIGI_					0	0	0		nc|ENSG00000115657|Q9NP58-4|ABCB6;ENSG00000115657|ENST00000265316|ABCB6;ENST00000446716.5_1_2:220075515-220081188:-|nuORF;ENST00000497882.5_1_2:220079653-220079878:-|nuORF	nc|ENSG00000115657|Q9NP58-4|ABCB6	nc|ENSG00000115657|Q9NP58-4|ABCB6	MULTI-SECPEP	A375_MHC_IP_R1	1	465.1888122558594	2	464.789318	927.564084	-0.48936	-0.00022745	-0.38687	-0.00017981	-0.87623	-0.00040726	464.78913378684456	133.48	0.30634	133.48	133.36	133.66	0					7	5	2	0	0	0	0.20094	1	51512	51512		53.576	0	1	2240200			54141	3329	39410	39724	52837	52837					0.09740412734140591
TLADIIIGI	9	Unmodified	_TLADIIIGI_					0	0	0		nc|ENSG00000115657|Q9NP58-4|ABCB6;ENSG00000115657|ENST00000265316|ABCB6;ENST00000446716.5_1_2:220075515-220081188:-|nuORF;ENST00000497882.5_1_2:220079653-220079878:-|nuORF	nc|ENSG00000115657|Q9NP58-4|ABCB6	nc|ENSG00000115657|Q9NP58-4|ABCB6	MULTI-MATCH	A375_MHC_IP_R2	2		2	464.789318	927.564084	-0.54308	-0.00025242	0.065695	3.0534E-05	-0.47739	-0.00022189	464.7893431636193	133.36	0.20312	133.53	133.4	133.6	0.16487	0.021935	0.00015728	NaN	53.576	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1729800			54142	3329	39410	39724							0.09740412734140591
TLADLVHHV	9	Unmodified	_TLADLVHHV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.T2707Mfs*5|1|0.21|ENSG00000196367|chr7:98976664-98976688|CGCTGATGTTGGAGCACCAGGCTTT/-|frameshift_variant;TRRAP|p.I1891Sfs*37|1|0.32|ENSG00000196367|chr7:98953393-98953393|T/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	A375_MHC_IP_R1	1	503.1797790527344	2	502.779816	1003.54508	-0.39704	-0.00019962	-0.8705	-0.00043767	-1.2675	-0.00063729	502.7797502752258	60.737	1.2729	60.737	60.109	61.382	0					76	24	6	0	0	0	0.010819	1	21861	21861		108	75.692	1	14715000			54143	9031	39411	39725	52838	52838					0.04344876163088429
TLADLVHHV	9	Unmodified	_TLADLVHHV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.T2707Mfs*5|1|0.21|ENSG00000196367|chr7:98976664-98976688|CGCTGATGTTGGAGCACCAGGCTTT/-|frameshift_variant;TRRAP|p.I1891Sfs*37|1|0.32|ENSG00000196367|chr7:98953393-98953393|T/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	A375_MHC_IP_R2	2	503.17938232421875	2	502.779816	1003.54508	-1.0013	-0.00050345	-0.15563	-7.8247E-05	-1.157	-0.0005817	502.7799029912519	59.774	1.0104	60.521	59.946	60.957	0.74714					53	19	4	0	0	0	0.047455	1	22592	22592		88.904	71.961	1	18243000			54144	9031	39411	39725	52839	52839					0.04344876163088429
TLADVLVQ	8	Unmodified	_TLADVLVQ_					0	0	0		ENST00000487628.1_1_2:191224783-191227442:+|nuORF;ENST00000417336.5_1_2:191224783-191231435:+|nuORF;ENST00000422454.5_1_2:191224783-191229864:+|nuORF;ENSG00000151689|ENST00000392329|INPP1	ENST00000487628.1_1_2:191224783-191227442:+|nuORF	ENST00000487628.1_1_2:191224783-191227442:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	858.8922729492188	1	858.49311	857.485833	-0.64039	-0.00054977	-0.18987	-0.000163	-0.83026	-0.00071277	858.4928886399529	82.679	0.70689	83.422	83.144	83.851	0.74293					24	13	3	0	0	0	0.70843	1	31545	31545		32.117	3.9437	1	6944000			54145	12599	39412	39726	52840	52840					0.05138980148922201
TLADVLVQ	8	Unmodified	_TLADVLVQ_					0	0	0		ENST00000487628.1_1_2:191224783-191227442:+|nuORF;ENST00000417336.5_1_2:191224783-191231435:+|nuORF;ENST00000422454.5_1_2:191224783-191229864:+|nuORF;ENSG00000151689|ENST00000392329|INPP1	ENST00000487628.1_1_2:191224783-191227442:+|nuORF	ENST00000487628.1_1_2:191224783-191227442:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	858.49311	857.485833	-0.34996	-0.00030044	0.24271	0.00020836	-0.10726	-9.2078E-05	858.4932360962846	83.558	0.66051	83.558	83.226	83.887	0	0.068267	0.00013093	NaN	32.117	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6683200			54146	12599	39412	39726							0.05138980148922201
TLADVLYHV	9	Unmodified	_TLADVLYHV_					0	0	0		nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L;ENST00000520079.1_1_8:37996261-37996586:+|nuORF	nc|ENSG00000129691|Q9UBL3-2|ASH2L	nc|ENSG00000129691|Q9UBL3-2|ASH2L	MULTI-MSMS	A375_MHC_IP_R1	1	515.7207641601562	2	515.782025	1029.5495	-0.49129	-0.0002534	0.22787	0.00011753	-0.26342	-0.00013587	515.7820803831651	98.224	1.6276	98.224	97.743	99.371	0					88	31	4	0	0	0	0.001809	2	36094	36016;36094		146.01	93.739	1	46834000			54147	4208	39413	39727	52841;52842	52842					0.035903405860153725
TLADVLYHV	9	Unmodified	_TLADVLYHV_					0	0	0		nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L;ENST00000520079.1_1_8:37996261-37996586:+|nuORF	nc|ENSG00000129691|Q9UBL3-2|ASH2L	nc|ENSG00000129691|Q9UBL3-2|ASH2L	MULTI-MSMS	A375_MHC_IP_R2	2	515.7207641601562	2	515.782025	1029.5495	-0.92998	-0.00047967	0.32766	0.000169	-0.60232	-0.00031067	515.7821343261728	97.298	1.5775	98.053	97.72	99.297	0.75586					83	30	4	0	0	0	0.001809	2	36928	36877;36928		146.01	89.83	1	42723000			54148	4208	39413	39727	52843;52844	52844					0.035903405860153725
TLADYLHLL	9	Unmodified	_TLADYLHLL_					0	0	0		ENSG00000127125|ENST00000372561|PPCS;ENST00000471420.1_1_1:42922476-42938912:+|nuORF;ENST00000472013.1_1_1:42922230-42922863:+|nuORF	ENSG00000127125|ENST00000372561|PPCS	ENSG00000127125|ENST00000372561|PPCS	MULTI-MSMS	A375_MHC_IP_R1	1	530.1971435546875	2	529.797675	1057.5808	-0.32498	-0.00017217	-1.3293	-0.00070424	-1.6542	-0.00087641	529.7970017176877	127.9	0.45609	127.9	127.72	128.18	0					18	8	3	0	0	0	0.0016247	1	49069	49069		147.83	73.408	1	83491000			54149	4078	39414	39728	52845	52845					0.054309136201027286
TLADYLHLL	9	Unmodified	_TLADYLHLL_					0	0	0		ENSG00000127125|ENST00000372561|PPCS;ENST00000471420.1_1_1:42922476-42938912:+|nuORF;ENST00000472013.1_1_1:42922230-42922863:+|nuORF	ENSG00000127125|ENST00000372561|PPCS	ENSG00000127125|ENST00000372561|PPCS	MULTI-MSMS	A375_MHC_IP_R2	2	530.1967163085938	2	529.797675	1057.5808	-0.62128	-0.00032915	0.3761	0.00019926	-0.24519	-0.0001299	529.7977683739275	127.63	0.40549	127.89	127.71	128.12	0.26593					12	7	2	0	0	0	0.0053385	1	50073	50073		162.95	88.528	1	39961000			54150	4078	39414	39728	52846	52846					0.054309136201027286
TLAEEVVAL	9	Unmodified	_TLAEEVVAL_					0	0	0		HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant;ENSG00000128731|ENST00000261609|HERC2;ENST00000430598.5_1_15:20613931-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;ENST00000437318.5_1_15:20588586-20648641:-|nuORF	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	944.931640625	1	944.529889	943.522613	-0.14041	-0.00013262	0.85037	0.0008032	0.70995	0.00067057	944.5313584918	104.91	0.76311	105.67	105.41	106.17	0.76308					17	14	2	0	0	0	0.1277	1	39719	39719		64.236	18.215	1	2793000			54151	14109	39415	39729	52847	52847					0.04859231974796785
TLAEIAKVEL	10	Unmodified	_TLAEIAKVEL_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MSMS	A375_MHC_IP_R1	1	544.4653930664062	2	543.823889	1085.63323	-0.56411	-0.00030678	-0.033159	-1.8033E-05	-0.59727	-0.00032481	543.8236635204746	87.716	2.1357	87.716	87.39	89.526	0					67	41	3	0	0	0	0.38946	1	32396	32396		39.213	15.423	1	8933900			54152	5662	39416	39730	52848	52848					0.09383451963026346
TLAEIAKVEL	10	Unmodified	_TLAEIAKVEL_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-SECPEP	A375_MHC_IP_R2	2	544.1954345703125	2	543.823889	1085.63323	-0.69525	-0.00037809	0.14405	7.8337E-05	-0.5512	-0.00029976	543.8239272429757	86.825	1.2651	87.558	87.255	88.52	0.733					60	24	4	0	0	0	0.06997	1	33040	33040		84.522	20.562	1	8779800			54153	5662	39416	39730	52849	52849					0.09383451963026346
TLAEIYVAA	9	Unmodified	_TLAEIYVAA_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	A375_MHC_IP_R1	1	950.8449096679688	1	950.519325	949.512048	-0.1901	-0.00018069	-0.07814	-7.4273E-05	-0.26824	-0.00025496	950.5191153987348	90.56	1.0147	90.56	90.184	91.199	0					44	19	3	0	0	0	0.010002	1	33338	33338		123.1	33.669	1	10402000			54154	1535	39417	39731	52850	52850					0.03527249320370629
TLAEIYVAA	9	Unmodified	_TLAEIYVAA_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	A375_MHC_IP_R2	2	950.5111694335938	1	950.519325	949.512048	-0.069349	-6.5918E-05	0.0078028	7.4167E-06	-0.061546	-5.8501E-05	950.5192477575949	89.801	1.1232	90.533	90.135	91.258	0.7318					48	21	3	0	0	0	0.018481	1	34269	34269		85.357	14.641	1	7903500			54155	1535	39417	39731	52851	52851					0.03527249320370629
TLAEKIQTI	9	Unmodified	_TLAEKIQTI_					0	0	0		ENST00000352159.8_1_10:90773121-90774204:+|nuORF;nc|ENSG00000026103|P25445-6|FAS;ENSG00000026103|ENST00000652046|FAS	ENST00000352159.8_1_10:90773121-90774204:+|nuORF	ENST00000352159.8_1_10:90773121-90774204:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	509.2024230957031	2	508.802957	1015.59136	-0.26619	-0.00013544	-0.35621	-0.00018124	-0.6224	-0.00031668	508.8027531084945	54.368	0.65659	54.368	53.962	54.619	0					26	12	3	0	0	0	0.14438	1	19397	19397		59.052	5.6485	1	4837400			54156	1094	39418	39732	52852	52852					0.08418896274520193
TLAEKIQTI	9	Unmodified	_TLAEKIQTI_					0	0	0		ENST00000352159.8_1_10:90773121-90774204:+|nuORF;nc|ENSG00000026103|P25445-6|FAS;ENSG00000026103|ENST00000652046|FAS	ENST00000352159.8_1_10:90773121-90774204:+|nuORF	ENST00000352159.8_1_10:90773121-90774204:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	509.2024841308594	2	508.802957	1015.59136	-1.3014	-0.00066217	0.39686	0.00020193	-0.90457	-0.00046025	508.80312710869526	53.454	0.6637	54.205	53.842	54.505	0.75105					27	12	3	0	0	0	0.36673	1	20204	20204		38.615	7.3464	1	6722000			54157	1094	39418	39732	52853	52853					0.08418896274520193
TLAELLVLL	9	Unmodified	_TLAELLVLL_					0	0	0		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-SECPEP	A375_MHC_IP_R1	1	493.2205505371094	2	492.820618	983.626684	-0.67437	-0.00033235	0.25918	0.00012773	-0.41519	-0.00020462	492.8206659082127	139.04	1.1179	139.04	138.86	139.98	0					43	21	3	0	0	0	0.016207	1	53447	53447		109.63	24.273	1	8374800			54158	1840	39419	39733	52854	52854					0.13421558802315303
TLAELLVLL	9	Unmodified	_TLAELLVLL_					0	0	0		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-MSMS	A375_MHC_IP_R2	2	985.7044677734375	1	984.63396	983.626684	0.18811	0.00018522	-0.19464	-0.00019165	-0.0065253	-6.4251E-06	984.6336458667173	141.68	0.76074	141.72	141.42	142.18	0.038712					18	14	2	0	0	0	0.64808	1	55431	55431		11.64	0	1	1020800			54159	1840	39419	39733	52855	52855					0.13421558802315303
TLAELLVLL	9	Unmodified	_TLAELLVLL_					0	0	0		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-SECPEP	A375_MHC_IP_R2	2	493.2204895019531	2	492.820618	983.626684	-0.31814	-0.00015679	0.04891	2.4104E-05	-0.26923	-0.00013268	492.82057956558	138.93	0.90067	138.99	138.8	139.7	0.059906					33	17	3	0	0	0	0.061132	1	54452	54452		77.984	3.5616	1	3717900			54160	1840	39419	39733	52856	52856					0.13421558802315303
TLAELLVLL	9	Unmodified	_TLAELLVLL_					0	0	0		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-MATCH	A375_MHC_IP_R1	1		1	984.63396	983.626684	-0.18042	-0.00017765	-0.37464	-0.00036888	-0.55506	-0.00054653	984.6334343015747	141.67	1.2716	141.67	141.11	142.38	0	-0.024188	-5.5258E-05	NaN	11.64	38	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1891500			54161	1840	39419	39733							0.13421558802315303
TLAETIQGL	9	Unmodified	_TLAETIQGL_					0	0	0		nc|ENSG00000196497|Q8TEX9-2|IPO4;ENSG00000196497|ENST00000354464|IPO4;ENST00000558780.5_2_14:24649650-24651621:-|nuORF	nc|ENSG00000196497|Q8TEX9-2|IPO4	nc|ENSG00000196497|Q8TEX9-2|IPO4	MULTI-MSMS	A375_MHC_IP_R1	1	473.6661682128906	2	473.266207	944.517862	-0.39184	-0.00018544	0.11337	5.3652E-05	-0.27847	-0.00013179	473.2662971297418	93.528	1.1675	93.528	92.973	94.14	0					40	22	3	0	0	0	0.022213	1	34397	34397		81.613	24.142	1	2117300			54162	14837	39420	39734	52857	52857					0.04338347832049294
TLAETIQGL	9	Unmodified	_TLAETIQGL_					0	0	0		nc|ENSG00000196497|Q8TEX9-2|IPO4;ENSG00000196497|ENST00000354464|IPO4;ENST00000558780.5_2_14:24649650-24651621:-|nuORF	nc|ENSG00000196497|Q8TEX9-2|IPO4	nc|ENSG00000196497|Q8TEX9-2|IPO4	MULTI-MSMS	A375_MHC_IP_R2	2	473.6658935546875	2	473.266207	944.517862	-0.48473	-0.00022941	-0.09892	-4.6815E-05	-0.58365	-0.00027622	473.2663578513012	92.771	0.9135	93.51	93.19	94.104	0.73901					37	17	3	0	0	0	0.022213	1	35303	35303		81.613	24.142	1	2683400			54163	14837	39420	39734	52858	52858					0.04338347832049294
TLAETLVNL	9	Unmodified	_TLAETLVNL_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MULTI-MSMS	A375_MHC_IP_R1	1	487.6814270019531	2	487.281857	972.549162	-0.0065073	-3.1709E-06	-0.092133	-4.4895E-05	-0.09864	-4.8066E-05	487.28168397321184	117.15	1.4714	117.15	116.4	117.87	0					57	28	3	0	0	0	0.0095277	1	42786	42786		108	11.712	1	33073000			54164	5099	39421	39735	52859	52859					0.06178920866148019
TLAFAGTYLLV	11	Unmodified	_TLAFAGTYLLV_					0	0	0		ENST00000520545.5_1_8:99229439-99248416:-|nuORF;nc|ENSG00000104361|Q9H841-1|NIPAL2;ENSG00000104361|ENST00000430223|NIPAL2	ENST00000520545.5_1_8:99229439-99248416:-|nuORF	ENST00000520545.5_1_8:99229439-99248416:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	585.2332763671875	2	584.834257	1167.65396	-0.15323	-8.9617E-05	-0.34051	-0.00019914	-0.49375	-0.00028876	584.8340193789069	97.171	0.50558	97.171	96.934	97.44	0					19	9	3	0	0	0	0.62518	1	35715	35715		27.629	0	1	1451800			54165	2502	39422	39736	52860	52860					0.07684042342702924
TLAFWPPSL	9	Unmodified	_TLAFWPPSL_					0	0	0		ENST00000470306.5_1_1:156126086-156128580:+|nuORF	ENST00000470306.5_1_1:156126086-156128580:+|nuORF	ENST00000470306.5_1_1:156126086-156128580:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	515.6898193359375	2	516.28166	1030.54877	-0.48807	-0.00025198	-0.51856	-0.00026772	-1.0066	-0.0005197	516.2813664898258	52.201	0.71143	52.201	51.778	52.49	0					16	13	2	0	0	0	0.39388	1	18608	18608		32.305	1.6689	1	2277100			54166	12333	39423	39737	52861	52861					0.03471545936940856
TLAGDVHIV	9	Unmodified	_TLAGDVHIV_					0	0	0		VPS29|p.G61R|1|0.29|ENSG00000111237|chr12:110496026-110496026|C/T|missense_variant;ENST00000548539.1_1_12:110929849-110934008:-|nuORF;ENST00000548259.1_1_12:110930799-110939856:-|nuORF;ENSG00000111237|ENST00000549578|VPS29;nc|ENSG00000111237|Q9UBQ0-2|VPS29	VPS29|p.G61R|1|0.29|ENSG00000111237|chr12:110496026-110496026|C/T|missense_variant	VPS29|p.G61R|1|0.29|ENSG00000111237|chr12:110496026-110496026|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	463.1609802246094	2	462.761092	923.507631	-0.27301	-0.00012634	-0.11708	-5.418E-05	-0.39009	-0.00018052	462.7609578048474	61.148	0.71385	61.148	60.922	61.636	0					23	13	3	0	0	0	0.07754	1	22015	22015		46.021	25.567	1	5043000			54167	2973	39424	39738	52862	52862					0.04281784897477792
TLAGDVHIV	9	Unmodified	_TLAGDVHIV_					0	0	0		VPS29|p.G61R|1|0.29|ENSG00000111237|chr12:110496026-110496026|C/T|missense_variant;ENST00000548539.1_1_12:110929849-110934008:-|nuORF;ENST00000548259.1_1_12:110930799-110939856:-|nuORF;ENSG00000111237|ENST00000549578|VPS29;nc|ENSG00000111237|Q9UBQ0-2|VPS29	VPS29|p.G61R|1|0.29|ENSG00000111237|chr12:110496026-110496026|C/T|missense_variant	VPS29|p.G61R|1|0.29|ENSG00000111237|chr12:110496026-110496026|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	463.1607666015625	2	462.761092	923.507631	-0.8507	-0.00039367	0.27663	0.00012801	-0.57408	-0.00026566	462.76113164576435	60.245	0.66249	60.99	60.701	61.364	0.74503					30	12	3	0	0	0	0.1277	1	22780	22780		54.774	27.89	1	6542200			54168	2973	39424	39738	52863	52863					0.04281784897477792
TLAGSWSSC	9	Unmodified	_TLAGSWSSC_					0	0	0		ENST00000389857.10_1_14:91787621-91791179:-|nuORF	ENST00000389857.10_1_14:91787621-91791179:-|nuORF	ENST00000389857.10_1_14:91787621-91791179:-|nuORF	MSMS	A375_MHC_IP_R2	2	456.14208984375	2	456.20001	910.385467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.815	1	62.558	62.058	63.058	0.74263								0	0	0	0.15486	1	23430	23430		7.2892	1.5288	1				54169	11404	39425	39739	52864	52864					-0.07331000176407088
TLAIARNL	8	Unmodified	_TLAIARNL_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	A375_MHC_IP_R1	1	436.6714782714844	2	436.271627	870.528701	-0.12479	-5.4441E-05	-0.48509	-0.00021163	-0.60987	-0.00026607	436.2715382517947	55.468	0.91523	55.468	55.228	56.143	0					30	17	3	0	0	0	0.1699	1	19822	19822		71.134	13.662	1	4521500			54170	5711	39426	39740	52865	52865					0.0882579499698295
TLAIARNL	8	Unmodified	_TLAIARNL_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-SECPEP	A375_MHC_IP_R2	2	436.6712341308594	2	436.271627	870.528701	-0.48543	-0.00021178	-0.63646	-0.00027767	-1.1219	-0.00048945	436.27157309319836	54.516	0.86307	55.267	54.916	55.779	0.75075					34	16	3	0	0	0	0.24561	1	20533	20533		52.268	3.9225	1	5665400			54171	5711	39426	39740	52866	52866					0.0882579499698295
TLAKDVRL	8	Unmodified	_TLAKDVRL_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-SECPEP	A375_MHC_IP_R2	2	457.6709899902344	2	458.284734	914.554916	-0.13067	-5.9884E-05	-0.099956	-4.5808E-05	-0.23063	-0.00010569	458.2846562179823	43.769	0.35255	44.538	44.38	44.732	0.7691					10	6	2	0	0	0	0.8957	1	16359	16359		21.747	0.20967	1	1948100			54172	1676	39427	39741	52867	52867					0.09422064168461475
TLAKYLMEL	9	Unmodified	_TLAKYLMEL_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1	MULTI-SECPEP	A375_MHC_IP_R1	1	541.6365966796875	2	541.301736	1080.58892	-0.51369	-0.00027806	-0.2438	-0.00013197	-0.7575	-0.00041003	541.301621518543	105.46	0.66063	105.46	105.2	105.86	0					17	12	2	0	0	0	0.47674	1	38747	38747		29.841	7.1043	1	2742600			54173	4546;6246	39428	39742	52868	52868					0.05184724545210884
TLAKYLMEL	9	Unmodified	_TLAKYLMEL_					0	0	0		ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	ENSG00000134057|ENST00000256442|CCNB1	MULTI-SECPEP	A375_MHC_IP_R2	2	541.7017211914062	2	541.301736	1080.58892	-0.78345	-0.00042408	1.2532	0.00067837	0.46978	0.00025429	541.3028699351458	104.41	0.96466	105.18	104.45	105.41	0.76308					31	18	3	0	0	0	0.23894	1	39534	39534		40.239	11.158	1	2275900			54174	4546;6246	39428	39742	52869	52869					0.05184724545210884
TLALAYEAVI	10	Unmodified	_TLALAYEAVI_					0	0	0		NPY1R|p.G48E|1|0.28|ENSG00000164128|chr4:163326412-163326412|C/T|missense_variant	NPY1R|p.G48E|1|0.28|ENSG00000164128|chr4:163326412-163326412|C/T|missense_variant	NPY1R|p.G48E|1|0.28|ENSG00000164128|chr4:163326412-163326412|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	531.6416015625	2	532.305332	1062.59611	-0.61934	-0.00032968	-0.081529	-4.3398E-05	-0.70087	-0.00037307	532.3053603729658	77.511	0.30267	77.511	77.336	77.639	0					9	5	2	0	0	0	0.78945	1	28307	28307		19.257	0	1	1589200			54175	15027	39429	39743	52870	52870					0.06731780417271693
TLALEISSPK	10	Unmodified	_TLALEISSPK_					0	0	0		ENST00000592069.1_1_19:19445267-19445360:+|nuORF	ENST00000592069.1_1_19:19445267-19445360:+|nuORF	ENST00000592069.1_1_19:19445267-19445360:+|nuORF	MSMS	A375_MHC_IP_R2	2	529.8619995117188	2	529.808239	1057.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.241	1	75.978	75.478	76.478	0.73752								0	0	0	0.13721	1	28558	28558		31.268	0	1				54176	13806	39430	39744	52871	52871					0.0754287892893899
TLALGGSLLL	10	Unmodified	_TLALGGSLLL_					0	0	0			REV__ENSG00000204525|ENST00000376228|HLA-C	REV__ENSG00000204525|ENST00000376228|HLA-C	MULTI-SECPEP	A375_MHC_IP_R1	1	479.1219787597656	2	479.302593	956.590633	-0.44495	-0.00021326	0.44766	0.00021456	0.0027085	1.2982E-06	479.3027623685566	73.935	0.45627	73.935	73.69	74.146	0					13	8	2	0	0	0	0.61429	1	26881	26881		37.974	7.3375	1	1342200	+		54177	22523	39431	39745	52872	52872					0.11060101625469088
TLAMKAKCKL	10	Unmodified	_TLAMKAKCKL_					0	0	0		ENST00000468945.1_1_1:17672544-17674609:+|nuORF;ENSG00000159339|ENST00000375448|PADI4	ENST00000468945.1_1_1:17672544-17674609:+|nuORF	ENST00000468945.1_1_1:17672544-17674609:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	554.2327270507812	2	553.824855	1105.63516	-0.47258	-0.00026172	-1.6539	-0.00091595	-2.1264	-0.0011777	553.824265340465	70.893	0.81891	70.893	70.289	71.108	0					23	15	2	0	0	0	0.79457	1	25730	25730		20.415	0	1	1242200			54178	6366	39432	39746	52873	52873					0.08656466175648347
TLAPHETF	8	Unmodified	_TLAPHETF_					0	0	0			REV__ENST00000427130.6_1_8:59535830-59536311:-|nuORF	REV__ENST00000427130.6_1_8:59535830-59536311:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	457.65277099609375	2	458.232168	914.449782	-0.20978	-9.6128E-05	-0.030872	-1.4146E-05	-0.24065	-0.00011027	458.2320371452936	53.631	0.35515	53.631	53.352	53.707	0					11	6	2	0	0	0	0.97144	1	19076	19076		14.582	14.582	1	1193700	+		54179	24661	39433	39747	52874	52874					-0.010864770279567892
TLAPKRVKKP	10	Unmodified	_TLAPKRVKKP_					0	0	0			REV__nc|ENSG00000071537|Q9UBV2-2|SEL1L	REV__nc|ENSG00000071537|Q9UBV2-2|SEL1L	MULTI-MSMS	A375_MHC_IP_R2	2	1137.9466552734375	1	1137.74664	1136.73936	0.34641	0.00039413	4.2053	0.0047845	4.5517	0.0051787	1137.752375445751	113.87	0.2495	114.58	114.38	114.63	0.70985					5	4	2	0	0	0	0.71944	1	42909	42909		3.5965	0	1	1683400	+		54180	16588	39434	39748	52875	52875					0.1764625231901391
TLAPPLLRV	9	Unmodified	_TLAPPLLRV_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	A375_MHC_IP_R1	1	490.6566162109375	2	490.318577	978.622602	-0.41451	-0.00020324	0.09419	4.6183E-05	-0.32032	-0.00015706	490.3185855736548	89.986	1.0129	89.986	89.577	90.59	0					31	19	2	0	0	0	0.60917	1	33121	33121		25.399	6.1423	1	3742000			54181	7807	39435	39749	52876	52876					0.13243514099281128
TLAPPLLRV	9	Unmodified	_TLAPPLLRV_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	A375_MHC_IP_R2	2	490.7181091308594	2	490.318577	978.622602	-0.46857	-0.00022975	-0.17654	-8.6562E-05	-0.64511	-0.00031631	490.3184655828747	88.978	1.0081	89.71	89.331	90.339	0.7318					31	19	2	0	0	0	0.35487	1	33833	33833		29.082	5.9332	1	4278600			54182	7807	39435	39749	52877	52877					0.13243514099281128
TLAQEWRR	8	Unmodified	_TLAQEWRR_					0	0	0			REV__ENST00000476203.2_1_1:78269082-78324778:+|nuORF	REV__ENST00000476203.2_1_1:78269082-78324778:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	529.6880493164062	2	530.28834	1058.56213	-0.12795	-6.7852E-05	-0.91046	-0.0004828	-1.0384	-0.00055066	530.2875974505669	69.707	0.55584	69.707	69.427	69.983	0					16	10	2	0	0	0	0.88903	1	25251	25251		30.637	5.2372	1	2322900	+		54183	21614	39436	39750	52878	52878					0.035187967688898425
TLAQHSVEL	9	Unmodified	_TLAQHSVEL_					0	0	0		nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1	nc|ENSG00000090989|Q9NV70-2|EXOC1	nc|ENSG00000090989|Q9NV70-2|EXOC1	MULTI-MSMS	A375_MHC_IP_R1	1	499.1496887207031	2	499.269281	996.52401	-0.17282	-8.6284E-05	0.053559	2.674E-05	-0.11926	-5.9544E-05	499.2692427411061	42.764	0.35497	42.764	42.587	42.942	0					10	6	2	0	0	0	0.53367	1	14885	14885		18.146	1.2041	1	1787300			54184	1966	39437	39751	52879	52879					0.025608660635725755
TLAQQPTAV	9	Unmodified	_TLAQQPTAV_					0	0	0		nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC;ENST00000424419.6_1_1:41157373-41232429:+|nuORF;ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-7|NFYC;nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC	nc|ENSG00000066136|Q13952-4|NFYC	nc|ENSG00000066136|Q13952-4|NFYC	MULTI-MSMS	A375_MHC_IP_R1	1	465.1578674316406	2	464.758549	927.502546	-0.60278	-0.00028015	0.010796	5.0175E-06	-0.59199	-0.00027513	464.758466094122	41.458	0.76708	41.458	41.164	41.932	0					29	14	3	0	0	0	0.0098926	1	14291	14291		118.07	11.128	1	7651800			54185	1405	39438	39752	52880	52880					0.03589481034839537
TLAQQPTAV	9	Unmodified	_TLAQQPTAV_					0	0	0		nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC;ENST00000424419.6_1_1:41157373-41232429:+|nuORF;ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-7|NFYC;nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC	nc|ENSG00000066136|Q13952-4|NFYC	nc|ENSG00000066136|Q13952-4|NFYC	MULTI-SECPEP	A375_MHC_IP_R1	1	929.2052612304688	1	928.509822	927.502546	-0.42787	-0.00039728	0.20853	0.00019362	-0.21934	-0.00020366	928.5098981970426	41.546	0.56199	41.546	41.215	41.777	0					18	10	2	0	0	0	0.011308	1	14366	14366		107.1	25.209	1	4515900			54186	1405	39438	39752	52881	52881					0.03589481034839537
TLAQQPTAV	9	Unmodified	_TLAQQPTAV_					0	0	0		nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC;ENST00000424419.6_1_1:41157373-41232429:+|nuORF;ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-7|NFYC;nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC	nc|ENSG00000066136|Q13952-4|NFYC	nc|ENSG00000066136|Q13952-4|NFYC	MULTI-MSMS	A375_MHC_IP_R2	2	465.6980285644531	2	464.758549	927.502546	-0.80203	-0.00037275	0.32254	0.0001499	-0.47949	-0.00022285	464.75862518934844	40.74	0.6611	41.515	41.285	41.946	0.77451					26	12	3	0	0	0	0.077132	1	15079	15079		54.774	18.647	1	12114000			54187	1405	39438	39752	52882	52882					0.03589481034839537
TLAQQPTAV	9	Unmodified	_TLAQQPTAV_					0	0	0		nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC;ENST00000424419.6_1_1:41157373-41232429:+|nuORF;ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-7|NFYC;nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC	nc|ENSG00000066136|Q13952-4|NFYC	nc|ENSG00000066136|Q13952-4|NFYC	MULTI-MATCH	A375_MHC_IP_R2	2		1	928.509822	927.502546	-0.46158	-0.00042858	0.13103	0.00012166	-0.33055	-0.00030692	928.5099118653699	40.744	0.50905	41.518	41.285	41.794	0.77451	-0.013895	-3.4444E-05	NaN	107.1	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4833600			54188	1405	39438	39752							0.03589481034839537
TLAQRVKEV	9	Unmodified	_TLAQRVKEV_					0	0	0		ENST00000462297.1_1_2:74754523-74754670:-|nuORF;ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF;nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1	ENST00000462297.1_1_2:74754523-74754670:-|nuORF	ENST00000462297.1_1_2:74754523-74754670:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	522.7134399414062	2	522.314023	1042.61349	-0.67934	-0.00035483	-0.17028	-8.8937E-05	-0.84962	-0.00044377	522.3139246347182	25.691	0.81168	25.691	25.46	26.271	0					43	15	4	0	0	0	0.0050367	1	7541	7541		162.31	72.914	1	83100000			54189	3299	39439	39753	52883	52883					0.0938912074293512
TLAQRVKEV	9	Unmodified	_TLAQRVKEV_					0	0	0		ENST00000462297.1_1_2:74754523-74754670:-|nuORF;ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF;nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1	ENST00000462297.1_1_2:74754523-74754670:-|nuORF	ENST00000462297.1_1_2:74754523-74754670:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	522.7132568359375	2	522.314023	1042.61349	-1.0038	-0.00052431	-0.14755	-7.7067E-05	-1.1514	-0.00060138	522.313968520406	24.95	0.66375	25.594	25.414	26.078	0.64368					35	12	3	0	0	0	0.0050367	1	8262	8262		162.31	75.983	1	95342000			54190	3299	39439	39753	52884	52884					0.0938912074293512
TLAREWII	8	Unmodified	_TLAREWII_					0	0	0			REV__ADGRD1|p.A718Pfs*17|1|0.2|ENSG00000111452|chr12:131120889-131120889|A/-|frameshift_variant	REV__ADGRD1|p.A718Pfs*17|1|0.2|ENSG00000111452|chr12:131120889-131120889|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	500.63507080078125	2	501.292559	1000.57057	-0.47655	-0.00023889	-0.35991	-0.00018042	-0.83646	-0.00041931	501.29243497866526	43.309	0.40562	44.081	43.826	44.231	0.7724					16	7	3	0	0	0	0.88799	1	16140	16140		9.3474	0	1	1127100	+		54191	15327	39440	39754	52885	52885					0.07030350685522535
TLARGLGLNF	10	Unmodified	_TLARGLGLNF_					0	0	0		CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	MULTI-SECPEP	A375_MHC_IP_R1	1	354.9222717285156	3	354.541586	1060.60293	-0.047623	-1.6884E-05	-0.043664	-1.5481E-05	-0.091287	-3.2365E-05	354.54149100101904	46.32	0.40109	46.32	46.094	46.495	0					11	7	2	0	0	0	0.94598	1	16158	16158		0.56317	0.16245	1	1771200		+	54192	570	39441	39755	52886	52886					0.07505138088527019
TLARVAEL	8	Unmodified	_TLARVAEL_					0	0	0			REV__METTL16|p.P49L|1|0.14|ENSG00000127804|chr17:2477868-2477868|G/A|missense_variant	REV__METTL16|p.P49L|1|0.14|ENSG00000127804|chr17:2477868-2477868|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	436.6712341308594	2	436.763635	871.512717	-0.54987	-0.00024016	-0.29428	-0.00012853	-0.84415	-0.00036869	436.763586227272	54.224	0.35388	54.975	54.865	55.219	0.75075					11	6	2	0	0	0	0.75389	1	20533	20533		19.257	1.122	1	1079400	+		54193	27011	39442	39756	52887	52887					0.071820887600893
TLARVAEL	8	Unmodified	_TLARVAEL_					0	0	0			REV__METTL16|p.P49L|1|0.14|ENSG00000127804|chr17:2477868-2477868|G/A|missense_variant	REV__METTL16|p.P49L|1|0.14|ENSG00000127804|chr17:2477868-2477868|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	436.763635	871.512717	-0.54987	-0.00024016	-0.29428	-0.00012853	-0.84415	-0.00036869	436.763586227272	54.224	0.35388	54.975	54.865	55.219	0.75075	-0.16447	0.00012954	NaN	19.257	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1079400	+		54194	27011	39442	39756							0.071820887600893
TLASGPPW	8	Unmodified	_TLASGPPW_					0	0	0			REV__nc|ENSG00000100888|Q9HCK8-2|CHD8	REV__nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-SECPEP	A375_MHC_IP_R2	2	415.1160888671875	2	414.716153	827.417754	0.065867	2.7316E-05	-0.11639	-4.8271E-05	-0.050527	-2.0954E-05	414.71600917899104	42.702	0.50777	43.474	43.116	43.623	0.7724					16	9	3	0	0	0	0.94479	1	15893	15893		13.508	0	1	1959100	+		54195	17126	39443	39757	52888	52888					-0.002858447111066198
TLASIIKEV	9	Unmodified	_TLASIIKEV_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	A375_MHC_IP_R2	2	487.69976806640625	2	487.30005	972.585547	-0.615	-0.00029969	0.21705	0.00010577	-0.39795	-0.00019392	487.3000372527237	82.357	0.81096	83.1	82.787	83.598	0.74293					24	15	2	0	0	0	0.16595	1	31294	31294		53.404	0	1	3663300			54196	4093	39444	39758	52889	52889					0.09815797762848888
TLASINSFVG	10	Unmodified	_TLASINSFVG_					0	0	0			REV__TSPAN17|p.L49F|1|0.43|ENSG00000048140|chr5:176651760-176651760|C/T|missense_variant	REV__TSPAN17|p.L49F|1|0.43|ENSG00000048140|chr5:176651760-176651760|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	505.10845947265625	2	504.771657	1007.52876	-0.55465	-0.00027997	0.51732	0.00026113	-0.037332	-1.8844E-05	505.273377567178	53.002	0.76006	53.002	52.592	53.352	0					17	14	2	0	0	0	0.64716	1	18915	18915		17.113	8.3675	1	1911100	+		54197	28919	39445	39759	52890	52890					0.025297502063381216
TLASLLSGLV	10	Unmodified	_TLASLLSGLV_					0	0	0		ENSG00000177174|ENST00000317861|OR14C36	ENSG00000177174|ENST00000317861|OR14C36	ENSG00000177174|ENST00000317861|OR14C36	MULTI-SECPEP	A375_MHC_IP_R1	1	487.6994323730469	2	487.30005	972.585547	-0.28029	-0.00013658	-0.055646	-2.7116E-05	-0.33593	-0.0001637	487.2998707076914	83.406	0.71163	83.406	83.075	83.786	0					24	13	2	0	0	0	0.24752	1	30489	30489		53.833	6.2384	1	3833600			54198	8066	39446	39760	52891	52891					0.09815797762860257
TLASSLHTL	9	Unmodified	_TLASSLHTL_					0	0	0		nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	MULTI-MSMS	A375_MHC_IP_R1	1	472.1659240722656	2	471.766374	941.518196	-0.28902	-0.00013635	-0.61312	-0.00028925	-0.90214	-0.0004256	471.76606253372023	56.321	0.70897	56.321	55.941	56.65	0					20	13	2	0	0	0	0.13797	1	20188	20188		43.858	3.901	1	2163600			54199	4374	39447	39761	52892	52892					0.04509767551905952
TLATITLQNY	10	Unmodified	_TLATITLQNY_					0	0	0		tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	379.95697021484375	3	379.876523	1136.60774	0.019671	7.4726E-06	0.0319	1.2118E-05	0.051571	1.9591E-05	379.87653267237243	32.198	1.5771	32.935	32.654	34.232	0.73692					75	30	5	0	0	0	0.70741	1	11918	11918		8.9762	1.9392	1	365850000			54200	29524	39448	39762	52893	52893					0.044899774406076176
TLAVVTLVVT	10	Unmodified	_TLAVVTLVVT_					0	0	0		ENSG00000188324|ENST00000358433|OR6C6	ENSG00000188324|ENST00000358433|OR6C6	ENSG00000188324|ENST00000358433|OR6C6	MULTI-SECPEP	A375_MHC_IP_R1	1	508.7052001953125	2	508.323525	1014.6325	-0.41799	-0.00021247	-0.047215	-2.4001E-05	-0.4652	-0.00023647	508.32324633045147	75.639	0.40175	75.639	75.413	75.815	0					10	7	2	0	0	0	0.87163	1	27514	27514		9.3831	0	1	937140			54201	8902	39449	39763	52894	52894					0.1257665731399129
TLCDYIYEL	9	Unmodified	_TLCDYIYEL_					0	0	0		ENSG00000113643|ENST00000231572|RARS1;nc|ENSG00000113643|P54136-2|RARS1	ENSG00000113643|ENST00000231572|RARS1	ENSG00000113643|ENST00000231572|RARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	1132.4395751953125	1	1132.52309	1131.51581	0.077447	8.771E-05	0.37551	0.00042528	0.45296	0.00051299	1132.5227587037893	129	0.20377	129.24	129.16	129.36	0.23946					5	3	2	0	0	0	0.040439	1	50730	50730		81.613	47.511	1	3574700			54202	3170	39450	39764	52895	52895					-0.04468448968054872
TLCDYIYEL	9	Unmodified	_TLCDYIYEL_					0	0	0		ENSG00000113643|ENST00000231572|RARS1;nc|ENSG00000113643|P54136-2|RARS1	ENSG00000113643|ENST00000231572|RARS1	ENSG00000113643|ENST00000231572|RARS1	MULTI-MATCH	A375_MHC_IP_R1	1		1	1132.52309	1131.51581	-0.081302	-9.2077E-05	0.50346	0.00057018	0.42215	0.0004781	1133.5258803668964	129.3	0.30536	129.3	129.14	129.45	0	0.029811	0.00010256	NaN	81.613	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5099700			54203	3170	39450	39764							-0.04468448968054872
TLCLWQRL	8	Unmodified	_TLCLWQRL_					0	0	0		ENST00000497054.5_1_2:74386333-74392371:-|nuORF	ENST00000497054.5_1_2:74386333-74392371:-|nuORF	ENST00000497054.5_1_2:74386333-74392371:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	517.18798828125	2	516.786587	1031.55862	-0.33186	-0.0001715	1.4934	0.00077179	1.1616	0.00060029	516.7874956954868	35.818	0.56297	35.818	35.369	35.932	0					17	10	2	0	0	0	0.91495	1	11954	11954		18.135	1.1927	1	2132500			54204	12738	39451	39765	52896	52896					0.044104106706754465
TLCTHQWEY	9	Unmodified	_TLCTHQWEY_					0	0	0			REV__ENSG00000163312|ENST00000295488|HELQ	REV__ENSG00000163312|ENST00000295488|HELQ	MULTI-SECPEP	A375_MHC_IP_R1	1	591.1596069335938	2	590.758223	1179.50189	-0.14525	-8.5809E-05	1.5707	0.00092789	1.4254	0.00084208	590.759109965488	72.246	0.65736	72.246	71.968	72.625	0					18	12	2	0	0	0	0.71541	1	26273	26273		11.64	4.3511	1	2943600	+		54205	20350	39452	39766	52897	52897					-0.08067681676493521
TLCTHQWEY	9	Unmodified	_TLCTHQWEY_					0	0	0			REV__ENSG00000163312|ENST00000295488|HELQ	REV__ENSG00000163312|ENST00000295488|HELQ	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	590.758223	1179.50189	-0.87465	-0.0005167	2.2116	0.0013065	1.337	0.00078984	590.7595271342531	71.642	0.45583	72.377	72.111	72.567	0.73421	0.065366	0.00020483	NaN	16.942	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2532900	+		54206	20350	39452	39766							-0.08067681676493521
TLCTTFEKSL	10	Unmodified	_TLCTTFEKSL_					0	0	0			REV__ENSG00000055147|ENST00000351797|FAM114A2	REV__ENSG00000055147|ENST00000351797|FAM114A2	MSMS	A375_MHC_IP_R1	1	572.0095825195312	2	571.791732	1141.56891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.185	1	96.185	95.685	96.685	0								0	0	0	0.15207	1	35351	35351		13.906	0	1		+		54207	16412	39453	39767	52898	52898					0.003789288145981118
TLDAAISKV	9	Unmodified	_TLDAAISKV_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	A375_MHC_IP_R1	1	459.6688232421875	2	459.26875	916.522947	0.24002	0.00011023	-0.39671	-0.0001822	-0.15669	-7.1963E-05	459.26850427103443	48.926	1.4186	48.926	48.223	49.642	0					70	27	3	0	0	0	0.074562	1	17130	17130		55.235	7.6403	1	30919000			54208	4093	39454	39768	52899	52899					0.06134651694674176
TLDAGKFQIY	10	Unmodified	_TLDAGKFQIY_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	A375_MHC_IP_R1	1	578.7049560546875	2	578.305864	1154.59717	-0.23429	-0.00013549	-0.48472	-0.00028032	-0.71901	-0.00041581	578.3055332508657	77.127	1.0179	77.127	76.673	77.69	0					32	19	2	0	0	0	0.2001	1	28114	28114		96.367	37.688	1	6429100			54209	2877	39455	39769	52900	52900					0.02605994786199517
TLDAGKFQIY	10	Unmodified	_TLDAGKFQIY_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	A375_MHC_IP_R2	2	578.7055053710938	2	578.305864	1154.59717	-0.20141	-0.00011648	-0.57932	-0.00033502	-0.78073	-0.0004515	578.3054506459799	76.427	0.9633	77.167	76.589	77.553	0.74052					37	18	3	0	0	0	0.098343	1	28969	28969		114.2	32.311	1	7201000			54210	2877	39455	39769	52901	52901					0.02605994786199517
TLDAGNIKL	9	Unmodified	_TLDAGNIKL_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	A375_MHC_IP_R1	1	473.1737365722656	2	472.7742	943.533846	-0.354	-0.00016736	0.28079	0.00013275	-0.073212	-3.4613E-05	472.77410905281107	62.27	0.81941	62.27	61.943	62.762	0					33	15	3	0	0	0	0.13845	1	22467	22467		43.772	5.7984	1	7361400			54211	9050	39456	39770	52902	52902					0.059820540689429436
TLDAGNIKL	9	Unmodified	_TLDAGNIKL_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-SECPEP	A375_MHC_IP_R2	2	473.1737976074219	2	472.7742	943.533846	-0.88689	-0.0004193	0.72041	0.00034059	-0.16647	-7.8705E-05	472.77417422989856	61.374	0.80531	62.119	61.819	62.624	0.74503					36	15	3	0	0	0	0.028087	1	23292	23292		76.825	26.892	1	7432300			54212	9050	39456	39770	52903	52903					0.059820540689429436
TLDAVKFSQY	10	Unmodified	_TLDAVKFSQY_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-SECPEP	A375_MHC_IP_R1	1	586.6341552734375	2	586.303321	1170.59209	-0.43075	-0.00025255	-0.13276	-7.784E-05	-0.56351	-0.00033039	586.8046395557442	66.047	0.81178	66.047	65.717	66.529	0					31	15	3	0	0	0	0.20239	1	23936	23936		71.708	53.335	1	3695200			54213	1441	39457	39771	52904	52904					0.01361690923590686
TLDAVKFSQY	10	Unmodified	_TLDAVKFSQY_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-SECPEP	A375_MHC_IP_R2	2	586.7034301757812	2	586.303321	1170.59209	-0.64685	-0.00037925	-0.57166	-0.00033517	-1.2185	-0.00071442	586.3035134658649	65.24	0.91341	65.978	65.664	66.577	0.73811					34	17	3	0	0	0	0.024623	1	24728	24728		85.764	49.258	1	3504900			54214	1441	39457	39771	52905	52905					0.01361690923590686
TLDCKFRRD	9	Unmodified	_TLDCKFRRD_					0	0	0		ACAP3|p.R574C|2|0.31|ENSG00000131584|chr1:1295540-1295540|G/A|missense_variant	ACAP3|p.R574C|2|0.31|ENSG00000131584|chr1:1295540-1295540|G/A|missense_variant	ACAP3|p.R574C|2|0.31|ENSG00000131584|chr1:1295540-1295540|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	385.6147155761719	3	385.197602	1152.57098	0.32284	0.00012436	-1.6782	-0.00064646	-1.3554	-0.0005221	385.19677781817376	33.548	0.40443	33.548	33.393	33.798	0					12	7	2	0	0	0	0.77396	1	10937	10937		1.9064	1.2795	1	881270			54215	29	39458	39772	52906	52906					0.0007940234306715865
TLDDESLKY	9	Unmodified	_TLDDESLKY_					0	0	0		nc|ENSG00000148426|Q86WR7-2|PROSER2;ENSG00000148426|ENST00000277570|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	MULTI-MSMS	A375_MHC_IP_R1	1	542.713134765625	2	542.263862	1082.51317	-0.5198	-0.00028187	0.15343	8.3199E-05	-0.36637	-0.00019867	542.2639153904252	47.567	0.96025	47.567	47.263	48.223	0					34	18	3	0	0	0	0.056914	1	16754	16754		61.602	32.52	1	10652000			54216	5742	39459	39773	52907	52907					-0.02478581101377131
TLDDESLKY	9	Unmodified	_TLDDESLKY_					0	0	0		nc|ENSG00000148426|Q86WR7-2|PROSER2;ENSG00000148426|ENST00000277570|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	MULTI-MSMS	A375_MHC_IP_R2	2	542.6634521484375	2	542.263862	1082.51317	-0.63295	-0.00034323	0.058493	3.1719E-05	-0.57446	-0.00031151	542.2638240390567	46.929	0.86433	47.69	47.361	48.225	0.76128					32	16	3	0	0	0	0.12748	1	17549	17549		45.74	12.954	1	10222000			54217	5742	39459	39773	52908	52908					-0.02478581101377131
TLDDIMAAV	9	Oxidation (M)	_TLDDIM(Oxidation (M))AAV_		TLDDIM(1)AAV		TLDDIM(44)AAV	0	0	1		ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-3|ANKRD17	ENSG00000132466|ENST00000358602|ANKRD17	ENSG00000132466|ENST00000358602|ANKRD17	MULTI-MSMS	A375_MHC_IP_R1	1	483.13604736328125	2	482.736425	963.458298	-0.34688	-0.00016745	-0.65783	-0.00031756	-1.0047	-0.00048501	482.7360890741077	77.444	0.91486	77.444	76.878	77.793	0					29	17	2	0	0	0	0.13491	1	28254	28254		44.407	8.3628	1	1669700			54218	4411	39460	39774	52909	52909		229			-0.024892911736287715
TLDDIMAAV	9	Oxidation (M)	_TLDDIM(Oxidation (M))AAV_		TLDDIM(1)AAV		TLDDIM(57)AAV	0	0	1		ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-3|ANKRD17	ENSG00000132466|ENST00000358602|ANKRD17	ENSG00000132466|ENST00000358602|ANKRD17	MULTI-MSMS	A375_MHC_IP_R2	2	483.1360778808594	2	482.736425	963.458298	-0.57752	-0.00027879	-0.10681	-5.1559E-05	-0.68433	-0.00033035	482.7363287536664	76.786	0.96232	77.527	76.994	77.956	0.74052					30	18	2	0	0	0	0.067501	1	29108	29108		57.471	15.377	1	1878200			54219	4411	39460	39774	52910	52910		229			-0.024892911736287715
TLDDKKVYL	9	Unmodified	_TLDDKKVYL_					0	0	0		ENSG00000125633|ENST00000376300|CCDC93;ENST00000466171.1_1_2:118694276-118701638:-|nuORF	ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	MULTI-MSMS	A375_MHC_IP_R1	1	548.2081298828125	2	547.808239	1093.60193	-0.31204	-0.00017094	-0.099638	-5.4582E-05	-0.41167	-0.00022552	547.8081800491625	39.191	0.50858	39.191	38.933	39.441	0					23	9	3	0	0	0	0.023053	1	13340	13340		96.936	49.187	1	10098000			54220	3973	39461	39775	52911	52911					0.058868789289590495
TLDDKKVYL	9	Unmodified	_TLDDKKVYL_					0	0	0		ENSG00000125633|ENST00000376300|CCDC93;ENST00000466171.1_1_2:118694276-118701638:-|nuORF	ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	MULTI-MSMS	A375_MHC_IP_R2	2	365.9413146972656	3	365.541252	1093.60193	-0.29582	-0.00010813	0.29707	0.00010859	0.0012492	4.5663E-07	365.541303527605	38.32	0.81477	39.095	38.843	39.658	0.77451					29	15	3	0	0	0	0.11638	1	14060	14060		47.732	15.694	1	10073000			54221	3973	39461	39775	52912	52912					0.058868789289590495
TLDDKKVYL	9	Unmodified	_TLDDKKVYL_					0	0	0		ENSG00000125633|ENST00000376300|CCDC93;ENST00000466171.1_1_2:118694276-118701638:-|nuORF	ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	MULTI-SECPEP	A375_MHC_IP_R2	2	548.2078247070312	2	547.808239	1093.60193	-1.1308	-0.00061945	0.27549	0.00015092	-0.85528	-0.00046853	547.8083881635932	38.247	0.60973	39.022	38.843	39.453	0.77451					25	11	3	0	0	0	0.14273	1	14066	14066		65.474	32.688	1	8673500			54222	3973	39461	39775	52913	52913					0.058868789289590495
TLDDKKVYL	9	Unmodified	_TLDDKKVYL_					0	0	0		ENSG00000125633|ENST00000376300|CCDC93;ENST00000466171.1_1_2:118694276-118701638:-|nuORF	ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	365.541252	1093.60193	0.44916	0.00016419	0.23034	8.42E-05	0.6795	0.00024839	365.5412029190961	39.155	0.76154	39.155	38.933	39.694	0	0.030247	-4.1632E-05	NaN	47.732	34	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10715000			54223	3973	39461	39775							0.058868789289590495
TLDDLIAAV	9	Unmodified	_TLDDLIAAV_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	A375_MHC_IP_R1	1	466.1615295410156	2	465.760758	929.506963	-0.017643	-8.2174E-06	1.0879	0.00050669	1.0702	0.00049848	465.7612762883337	126.13	0.50476	126.13	125.95	126.46	0					21	9	3	0	0	0	0.0094266	1	48176	48176		97.075	22.652	1	17982000			54224	4336	39462	39776	52914	52914					0.03938945457775844
TLDDLIAAV	9	Unmodified	_TLDDLIAAV_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	930.9171142578125	1	930.514239	929.506963	0.17357	0.00016151	1.7718	0.0016487	1.9454	0.0018102	930.5156207173005	126.13	0.65504	126.13	125.9	126.56	0					26	12	3	0	0	0	0.023756	1	48289	48289		92.822	28.586	1	106330000			54225	4336	39462	39776	52915	52915					0.03938945457775844
TLDDLIAAV	9	Unmodified	_TLDDLIAAV_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	A375_MHC_IP_R2	2	466.16009521484375	2	465.760758	929.506963	-0.60796	-0.00028316	-0.033988	-1.583E-05	-0.64195	-0.00029899	465.7606629012607	125.76	0.40419	126.06	125.82	126.23	0.2951					16	7	3	0	0	0	0.0096264	1	49117	49117		109.63	35.207	1	11091000			54226	4336	39462	39776	52916	52916					0.03938945457775844
TLDDLIAAV	9	Unmodified	_TLDDLIAAV_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-SECPEP	A375_MHC_IP_R2	2	930.165771484375	1	930.514239	929.506963	-0.2241	-0.00020853	-0.42718	-0.00039749	-0.65128	-0.00060602	930.5136837003772	125.71	0.70874	126	125.82	126.53	0.2951					29	13	4	0	0	0	0.033126	1	49041	49041		85.357	27.885	1	50406000			54227	4336	39462	39776	52917	52917					0.03938945457775844
TLDDLVKKR	9	Unmodified	_TLDDLVKKR_					0	0	0			REV__ENSG00000198862|ENST00000361371|LTN1	REV__ENSG00000198862|ENST00000361371|LTN1	MSMS	A375_MHC_IP_R2	2	544.3896484375	2	544.327131	1086.63971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.652	1	89.384	88.884	89.884	0.7318								0	0	0	0.15411	1	33737	33737		14.838	0.93222	1		+		54228	22433	39463	39777	52918	52918					0.09985389914436382
TLDDMDDFL	9	Unmodified	_TLDDMDDFL_					0	0	0			REV__tr|U7ST12|U7ST12_FUSNUMalatedehydrogenase(Oxaloacetate-decarboxylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01238PE=3SV=1	REV__tr|U7ST12|U7ST12_FUSNUMalatedehydrogenase(Oxaloacetate-decarboxylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01238PE=3SV=1	MSMS	A375_MHC_IP_R2	2	542.686279296875	2	542.728797	1083.44304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.57	1	101.33	100.83	101.83	0.76278								0	0	0	0.15486	1	38130	38130		12.532	5.8084	1		+		54229	28455	39464	39778	52919	52919					-0.09534202761483357
TLDDMISYY	9	Oxidation (M)	_TLDDM(Oxidation (M))ISYY_		TLDDM(1)ISYY		TLDDM(60)ISYY	0	0	1		ENSG00000154781|ENST00000383794|CCDC174	ENSG00000154781|ENST00000383794|CCDC174	ENSG00000154781|ENST00000383794|CCDC174	MULTI-MSMS	A375_MHC_IP_R1	1	569.1439819335938	2	568.744447	1135.47434	-0.42585	-0.0002422	-0.36128	-0.00020547	-0.78712	-0.00044767	568.7440081234264	80.959	0.91412	80.959	80.592	81.506	0					35	17	3	0	0	0	0.060021	1	29618	29618		60.39	60.39	1	2302200			54230	6108	39465	39779	52920	52920		325			-0.08797629727405365
TLDDMISYY	9	Oxidation (M)	_TLDDM(Oxidation (M))ISYY_		TLDDM(1)ISYY		TLDDM(51)ISYY	0	0	1		ENSG00000154781|ENST00000383794|CCDC174	ENSG00000154781|ENST00000383794|CCDC174	ENSG00000154781|ENST00000383794|CCDC174	MULTI-MSMS	A375_MHC_IP_R2	2	569.1444091796875	2	568.744447	1135.47434	-0.36995	-0.00021041	-0.75082	-0.00042703	-1.1208	-0.00063743	569.2452398645847	80.262	1.0154	81.007	80.607	81.622	0.74474					27	19	2	0	0	0	0.098973	1	30567	30567		50.855	24.587	1	4045000			54231	6108	39465	39779	52921	52921		325			-0.08797629727405365
TLDDMISYY	9	Unmodified	_TLDDMISYY_					0	0	0		ENSG00000154781|ENST00000383794|CCDC174	ENSG00000154781|ENST00000383794|CCDC174	ENSG00000154781|ENST00000383794|CCDC174	MULTI-MSMS	A375_MHC_IP_R1	1	561.1470947265625	2	560.74699	1119.47943	-0.28062	-0.00015735	-0.16086	-9.0203E-05	-0.44148	-0.00024756	560.7470234214351	109.91	0.76407	109.91	109.47	110.24	0					27	14	3	0	0	0	0.03063	1	40266	40266		74.423	49.749	1	1164300			54232	6108	39465	39780	52922	52922					-0.07553325864796534
TLDDMISYY	9	Unmodified	_TLDDMISYY_					0	0	0		ENSG00000154781|ENST00000383794|CCDC174	ENSG00000154781|ENST00000383794|CCDC174	ENSG00000154781|ENST00000383794|CCDC174	MULTI-SECPEP	A375_MHC_IP_R2	2	561.1472778320312	2	560.74699	1119.47943	-0.54647	-0.00030643	-0.12864	-7.2137E-05	-0.67511	-0.00037857	560.7470503535093	109.15	0.76377	109.9	109.52	110.28	0.74684					26	14	2	0	0	0	0.16229	1	41193	41193		57.471	45.831	1	1838700			54233	6108	39465	39780	52923	52923					-0.07553325864796534
TLDEDLERW	9	Unmodified	_TLDEDLERW_					0	0	0		ENSG00000121101|ENST00000349033|TEX14;nc|ENSG00000121101|Q8IWB6-2|TEX14;nc|ENSG00000121101|Q8IWB6|TEX14	ENSG00000121101|ENST00000349033|TEX14	ENSG00000121101|ENST00000349033|TEX14	MULTI-MSMS	A375_MHC_IP_R1	1	589.1806030273438	2	588.78021	1175.54587	-0.066617	-3.9223E-05	1.0732	0.00063187	1.0066	0.00059265	588.780903888971	109.08	0.86347	109.08	108.76	109.63	0					36	16	3	0	0	0	0.44024	1	40015	40015		22.736	5.6234	1	2005600			54234	3708	39466	39781	52924	52924					-0.03488373978530035
TLDEKELVVI	10	Unmodified	_TLDEKELVVI_					0	0	0			REV__PDK4|p.G283E|2|0.29|ENSG00000004799|chr7:95587749-95587749|C/T|missense_variant	REV__PDK4|p.G283E|2|0.29|ENSG00000004799|chr7:95587749-95587749|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	580.1680297851562	2	579.834454	1157.65436	-0.57214	-0.00033175	0.18519	0.00010738	-0.38695	-0.00022437	579.834478909686	71.676	0.55711	72.41	72.061	72.618	0.73421					15	10	2	0	0	0	0.85226	1	27152	27152		14.838	4.0143	1	3002100	+		54235	27760	39467	39782	52925	52925					0.08183417271902726
TLDEKIEKV	9	Unmodified	_TLDEKIEKV_					0	0	0		DDX27|p.K691Rfs*4|1|0.39|ENSG00000124228|chr20:49241967-49241967|A/-|frameshift_variant;ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF	DDX27|p.K691Rfs*4|1|0.39|ENSG00000124228|chr20:49241967-49241967|A/-|frameshift_variant	DDX27|p.K691Rfs*4|1|0.39|ENSG00000124228|chr20:49241967-49241967|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	359.2730407714844	3	358.87289	1073.59684	-0.34689	-0.00012449	-0.18129	-6.5059E-05	-0.52818	-0.00018955	358.8727862609472	29.429	0.84732	29.429	29.252	30.099	0					40	16	4	0	0	0	0.032066	1	9213	9213		73.196	6.5133	1	184940000			54236	725	39468	39783	52926	52926					0.06298575066307421
TLDEKIEKV	9	Unmodified	_TLDEKIEKV_					0	0	0		DDX27|p.K691Rfs*4|1|0.39|ENSG00000124228|chr20:49241967-49241967|A/-|frameshift_variant;ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF	DDX27|p.K691Rfs*4|1|0.39|ENSG00000124228|chr20:49241967-49241967|A/-|frameshift_variant	DDX27|p.K691Rfs*4|1|0.39|ENSG00000124228|chr20:49241967-49241967|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	538.20556640625	2	537.805697	1073.59684	-1.1207	-0.00060269	0.092888	4.9955E-05	-1.0278	-0.00055274	537.8056734801153	29.433	0.59624	29.433	29.252	29.848	0					26	11	4	0	0	0	0.0046244	1	9216	9216		189.73	47.652	1	112180000			54237	725	39468	39783	52927	52927					0.06298575066307421
TLDEKIEKV	9	Unmodified	_TLDEKIEKV_					0	0	0		DDX27|p.K691Rfs*4|1|0.39|ENSG00000124228|chr20:49241967-49241967|A/-|frameshift_variant;ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF	DDX27|p.K691Rfs*4|1|0.39|ENSG00000124228|chr20:49241967-49241967|A/-|frameshift_variant	DDX27|p.K691Rfs*4|1|0.39|ENSG00000124228|chr20:49241967-49241967|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	359.2724609375	3	358.87289	1073.59684	-0.87178	-0.00031286	0.05995	2.1514E-05	-0.81183	-0.00029134	358.87285230109376	28.745	0.79804	29.443	29.234	30.032	0.69872					39	15	4	0	0	0	0.018166	1	9938	9938		85.764	19.081	1	149100000			54238	725	39468	39783	52928	52928					0.06298575066307421
TLDEKIEKV	9	Unmodified	_TLDEKIEKV_					0	0	0		DDX27|p.K691Rfs*4|1|0.39|ENSG00000124228|chr20:49241967-49241967|A/-|frameshift_variant;ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF	DDX27|p.K691Rfs*4|1|0.39|ENSG00000124228|chr20:49241967-49241967|A/-|frameshift_variant	DDX27|p.K691Rfs*4|1|0.39|ENSG00000124228|chr20:49241967-49241967|A/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	538.2049560546875	2	537.805697	1073.59684	-1.5332	-0.00082456	0.17019	9.1527E-05	-1.363	-0.00073303	537.8057527123744	28.76	0.64647	29.459	29.234	29.88	0.69872					27	12	3	0	0	0	0.0013878	1	9955	9955		176.43	46.655	1	111670000			54239	725	39468	39783	52929	52929					0.06298575066307421
TLDEKVAEL	9	Unmodified	_TLDEKVAEL_					0	0	0		ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	MULTI-SECPEP	A375_MHC_IP_R1	1	509.676513671875	2	509.276772	1016.53899	-0.60081	-0.00030598	-0.52795	-0.00026887	-1.1288	-0.00057485	509.2768228746916	52.823	0.65826	52.823	52.592	53.25	0					28	12	4	0	0	0	0.14554	1	18794	18794		49.527	7.6876	1	4135800			54240	1191	39469	39784	52930	52930					0.031383131409029374
TLDENPGVRY	10	Unmodified	_TLDENPGVRY_					0	0	0		ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-MSMS	A375_MHC_IP_R1	1	582.7010498046875	2	582.288202	1162.56185	-0.1315	-7.6571E-05	0.27678	0.00016117	0.14528	8.4597E-05	582.2882842592045	39.282	1.1684	39.282	38.983	40.151	0					49	22	4	0	0	0	0.36067	1	13616	13616		36.506	21.258	1	34956000			54241	3392	39470	39785	52931	52931					-0.01292667741608966
TLDENPGVRY	10	Unmodified	_TLDENPGVRY_					0	0	0		ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-SECPEP	A375_MHC_IP_R2	2	582.6876831054688	2	582.288202	1162.56185	-0.71765	-0.00041788	0.072934	4.2468E-05	-0.64471	-0.00037541	582.2882379250716	38.601	1.0195	39.376	39.047	40.067	0.77451					46	19	4	0	0	0	0.15413	1	14181	14181		67.838	67.838	1	36143000			54242	3392	39470	39785	52932	52932					-0.01292667741608966
TLDEYTTRV	9	Unmodified	_TLDEYTTRV_					0	0	0		nc|ENSG00000106459|Q16656-2|NRF1;ENSG00000106459|ENST00000393232|NRF1;nc|ENSG00000106459|Q16656-4|NRF1	nc|ENSG00000106459|Q16656-2|NRF1	nc|ENSG00000106459|Q16656-2|NRF1	MULTI-SECPEP	A375_MHC_IP_R2	2	549.178955078125	2	549.277303	1096.54005	-0.69775	-0.00038326	0.64005	0.00035156	-0.057706	-3.1697E-05	549.277849416873	42.965	1.166	43.738	43.116	44.282	0.7724					37	22	3	0	0	0	0.33896	1	15947	15947		33.445	16.332	1	9202800			54243	2691	39471	39786	52933	52933					-0.0043547249019866285
TLDFALEEY	9	Unmodified	_TLDFALEEY_					0	0	0		ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4;nc|ENSG00000134744|Q5TAX3-2|TUT4	ENSG00000134744|ENST00000257177|TUT4	ENSG00000134744|ENST00000257177|TUT4	MSMS	A375_MHC_IP_R1	1	550.6911010742188	2	550.760955	1099.50736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.651	1	43.651	43.151	44.151	0								0	0	0	0.15486	1	15187	15187		11.64	0	1				54244	4601	39472	39787	52934	52934					-0.038416796130377406
TLDFRDNALT	10	Unmodified	_TLDFRDNALT_					0	0	0		TLR5|p.L391F|1|0.07|ENSG00000187554|chr1:223111861-223111861|G/A|missense_variant	TLR5|p.L391F|1|0.07|ENSG00000187554|chr1:223111861-223111861|G/A|missense_variant	TLR5|p.L391F|1|0.07|ENSG00000187554|chr1:223111861-223111861|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	582.6666259765625	2	583.296027	1164.5775	-0.23377	-0.00013636	-2.025	-0.0011812	-2.2588	-0.0013176	583.7966020400034	74.921	0.50692	74.921	74.653	75.16	0					12	9	2	0	0	0	0.91909	1	27363	27363		13.906	8.1742	1	1323100			54245	29349	39473	39788	52935	52935					0.0017961877540528803
TLDFRDNALT	10	Unmodified	_TLDFRDNALT_					0	0	0		TLR5|p.L391F|1|0.07|ENSG00000187554|chr1:223111861-223111861|G/A|missense_variant	TLR5|p.L391F|1|0.07|ENSG00000187554|chr1:223111861-223111861|G/A|missense_variant	TLR5|p.L391F|1|0.07|ENSG00000187554|chr1:223111861-223111861|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	583.296027	1164.5775	-0.42773	-0.0002495	-2.2059	-0.0012867	-2.6337	-0.0015362	583.7964485474453	74.196	0.4558	74.934	74.655	75.111	0.73751	0.0062387	-6.3054E-05	NaN	18.146	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1605700			54246	29349	39473	39788							0.0017961877540528803
TLDGDEWDTSP	11	Unmodified	_TLDGDEWDTSP_					0	0	0			REV__ENSG00000116786|ENST00000375799|PLEKHM2	REV__ENSG00000116786|ENST00000375799|PLEKHM2	MULTI-MSMS	A375_MHC_IP_R1	1	618.7296752929688	2	618.256765	1234.49898	-0.38573	-0.00023848	2.8428	0.0017576	2.4571	0.0015191	618.2588851195875	91.733	0.55744	91.733	91.299	91.857	0					13	10	2	0	0	0	0.72649	1	33644	33644		12.241	2.1667	1	895180	+		54247	17972	39474	39789	52936	52936					-0.10889278320314588
TLDGSLHAV	9	Unmodified	_TLDGSLHAV_					0	0	0		ENSG00000178607|ENST00000433197|ERN1;ENST00000583028.1_1_17:62175367-62207458:-|nuORF;ENST00000584041.1_1_17:62152499-62207458:-|nuORF	ENSG00000178607|ENST00000433197|ERN1	ENSG00000178607|ENST00000433197|ERN1	MULTI-MSMS	A375_MHC_IP_R1	1	456.7110595703125	2	456.742899	911.471246	-0.18357	-8.3844E-05	-0.012689	-5.7958E-06	-0.19626	-8.964E-05	456.74284356819106	43.984	0.97038	43.984	43.706	44.676	0					41	18	3	0	0	0	0.077132	1	15403	15403		54.774	14.816	1	16090000			54248	8169	39475	39790	52937	52937					0.01196908000770236
TLDGSLHAV	9	Unmodified	_TLDGSLHAV_					0	0	0		ENSG00000178607|ENST00000433197|ERN1;ENST00000583028.1_1_17:62175367-62207458:-|nuORF;ENST00000584041.1_1_17:62152499-62207458:-|nuORF	ENSG00000178607|ENST00000433197|ERN1	ENSG00000178607|ENST00000433197|ERN1	MULTI-MSMS	A375_MHC_IP_R2	2	456.71124267578125	2	456.742899	911.471246	-0.14027	-6.4068E-05	-0.3803	-0.0001737	-0.52057	-0.00023777	456.7426840537092	43.233	1.0112	44.005	43.674	44.685	0.7724					44	19	4	0	0	0	0.11296	1	16031	16031		48.346	16.04	1	18696000			54249	8169	39475	39790	52938	52938					0.01196908000770236
TLDGTLLDP	9	Unmodified	_TLDGTLLDP_					0	0	0			REV__NFRKB|p.Q522Rfs*29|1|0.25|ENSG00000170322|chr11:129877334-129877334|A/-|frameshift_variant	REV__NFRKB|p.Q522Rfs*29|1|0.25|ENSG00000170322|chr11:129877334-129877334|A/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	472.6896667480469	2	472.75039	943.486227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.68	1	41.68	41.18	42.18	0								0	0	0	0.14905	1	14406	14406		23.148	0	1		+		54250	20984	39476	39791	52939	52939					0.012223550780959158
TLDHCLHHFIS	11	Unmodified	_TLDHCLHHFIS_					0	0	0		ENSG00000135093|ENST00000257548|USP30	ENSG00000135093|ENST00000257548|USP30	ENSG00000135093|ENST00000257548|USP30	MSMS	A375_MHC_IP_R2	2	661.5394287109375	2	661.819147	1321.62374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.588	1	98.344	97.844	98.844	0.75586								0	0	0	0.16124	1	37038	37038		12.241	3.4953	1				54251	4644	39477	39792	52940	52940					-0.024206395941291703
TLDHRLNDSY	10	Unmodified	_TLDHRLNDSY_					0	0	0		nc|ENSG00000163618|Q9ULU8-3|CADPS;ENSG00000163618|ENST00000383710|CADPS;nc|ENSG00000163618|Q9ULU8-4|CADPS;ENST00000490424.1_1_3:62521978-62535788:-|nuORF;nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;ENSG00000081803|ENST00000449022|CADPS2	nc|ENSG00000163618|Q9ULU8-3|CADPS;nc|ENSG00000081803|Q86UW7-3|CADPS2	nc|ENSG00000163618|Q9ULU8-3|CADPS	MULTI-SECPEP	A375_MHC_IP_R1	1	412.62255859375	3	411.866798	1232.57856	0.076449	3.1487E-05	0.28849	0.00011882	0.36494	0.00015031	411.86675126952025	27.438	0.25293	27.438	27.229	27.482	0					7	4	2	0	0	0	0.92832	1	8341	8341		5.4027	3.9476	1	1065600			54252	6693;1745	39478	39793	52941	52941					-0.028421668556802615
TLDILKLKF	9	Unmodified	_TLDILKLKF_					0	0	0			REV__nc|ENSG00000109832|Q9UHL0-2|DDX25	REV__nc|ENSG00000109832|Q9UHL0-2|DDX25	MULTI-SECPEP	A375_MHC_IP_R1	1	546.247314453125	2	545.847167	1089.67978	-0.58503	-0.00031933	-0.022604	-1.2338E-05	-0.60763	-0.00033167	545.8471591160396	58.203	0.45724	58.203	58.024	58.481	0					14	8	2	0	0	0	0.74875	1	20938	20938		15.847	0	1	1931400	+		54253	17599	39479	39794	52942	52942					0.13852936584976305
TLDITGSAEI	10	Unmodified	_TLDITGSAEI_					0	0	0		nc|ENSG00000104863|Q9HAP6-2|LIN7B;ENST00000474252.1_1_19:49618516-49621276:+|nuORF;ENSG00000104863|ENST00000221459|LIN7B;ENST00000469137.5_1_19:49617849-49621627:+|nuORF	nc|ENSG00000104863|Q9HAP6-2|LIN7B	nc|ENSG00000104863|Q9HAP6-2|LIN7B	MULTI-SECPEP	A375_MHC_IP_R1	1	509.676513671875	2	510.266404	1018.51826	-0.50138	-0.00025584	-0.91543	-0.00046712	-1.4168	-0.00072295	510.26591503161325	52.435	0.96315	52.435	52.085	53.048	0					20	16	2	0	0	0	0.72086	1	18794	18794		18.146	4.6385	1	2705900			54254	2544	39480	39795	52943	52943					0.009737227612504284
TLDIYTEEV	9	Unmodified	_TLDIYTEEV_					0	0	0			REV__ENSG00000118412|ENST00000551025|CASP8AP2	REV__ENSG00000118412|ENST00000551025|CASP8AP2	MULTI-MSMS	A375_MHC_IP_R1	1	542.1651000976562	2	541.766237	1081.51792	-0.60463	-0.00032757	-0.58762	-0.00031835	-1.1923	-0.00064592	541.7658220635027	63.862	0.45786	63.862	63.632	64.09	0					15	8	2	0	0	0	0.32899	1	23088	23088		28.487	28.487	1	3325500	+		54255	18038	39481	39796	52944	52944					-0.0195769695862964
TLDKKTFYK	9	Unmodified	_TLDKKTFYK_					0	0	0		nc|ENSG00000102387|Q5H9L4-3|TAF7L;ENSG00000102387|ENST00000356784|TAF7L;nc|ENSG00000102387|Q5H9L4|TAF7L	nc|ENSG00000102387|Q5H9L4-3|TAF7L	nc|ENSG00000102387|Q5H9L4-3|TAF7L	MULTI-MSMS	A375_MHC_IP_R1	1	382.2995300292969	3	381.88513	1142.63356	0.44309	0.00016921	-0.48136	-0.00018382	-0.038265	-1.4613E-05	381.8849366403548	20.46	0.50978	20.46	20.18	20.69	0					24	9	3	0	0	0	0.063448	1	5290	5290		59.052	0	1	16083000			54256	2377	39482	39797	52945	52945					0.06794871682882331
TLDKRLRYG	9	Unmodified	_TLDKRLRYG_					0	0	0			REV__nc|ENSG00000127463|Q8N766-4|EMC1	REV__nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	A375_MHC_IP_R2	2	374.6170654296875	3	374.552374	1120.63529	0.010131	3.7944E-06	-2.4698	-0.00092509	-2.4597	-0.00092129	374.55125311112664	51.99	0.45874	52.742	52.473	52.932	0.75225					10	8	2	0	0	0	0.67787	1	19602	19602		8.9762	1.8745	1	1492000	+		54257	18421	39483	39798	52946	52946					0.07979925491486028
TLDKSCALSVY	11	Unmodified	_TLDKSCALSVY_					0	0	0			REV__nc|ENSG00000151148|Q7Z3V4-3|UBE3B	REV__nc|ENSG00000151148|Q7Z3V4-3|UBE3B	MULTI-SECPEP	A375_MHC_IP_R2	2	399.9471435546875	3	400.537401	1198.59037	-0.31571	-0.00012646	2.7565	0.0011041	2.4408	0.00097764	401.20803786486897	23.578	0.81217	24.208	23.828	24.64	0.63014					31	15	4	0	0	0	0.94168	1	7644	7644		8.7518	0	1	1807200	+		54258	19740	39484	39799	52947	52947					-0.0009768615668690472
TLDLRDLKL	9	Unmodified	_TLDLRDLKL_					0	0	0			REV__COPE|p.A165T|1|0.28|ENSG00000105669|chr19:18905580-18905580|C/T|missense_variant	REV__COPE|p.A165T|1|0.28|ENSG00000105669|chr19:18905580-18905580|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	543.1980590820312	2	543.829506	1085.64446	-0.75705	-0.00041171	-0.47551	-0.0002586	-1.2326	-0.00067031	543.82925391207	63.526	0.50893	64.266	64.038	64.547	0.74022					22	9	3	0	0	0	0.5212	1	24090	24090		15.248	5.0979	1	10824000	+		54259	15905	39485	39800	52948	52948					0.10506274057183873
TLDLSHNQLQ	10	Unmodified	_TLDLSHNQLQ_					0	0	0		ENSG00000185245|ENST00000329125|GP1BA	ENSG00000185245|ENST00000329125|GP1BA	ENSG00000185245|ENST00000329125|GP1BA	MULTI-MSMS	A375_MHC_IP_R1	1	584.3400268554688	2	584.801477	1167.5884	-0.42862	-0.00025066	2.4354	0.0014242	2.0068	0.0011736	584.7978121743472	53.076	0.70845	53.076	52.847	53.555	0					22	8	4	0	0	0	0.60608	1	18925	18925		20.415	5.1661	1	2602300			54260	8650	39486	39801	52949	52949					0.01131021149717526
TLDPEPFVDC	10	Unmodified	_TLDPEPFVDC_					0	0	0		ENSG00000005339|ENST00000262367|CREBBP;nc|ENSG00000005339|Q92793-2|CREBBP	ENSG00000005339|ENST00000262367|CREBBP	ENSG00000005339|ENST00000262367|CREBBP	MSMS	A375_MHC_IP_R2	2	568.1929931640625	2	568.25244	1134.49033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.458	1	73.193	72.693	73.693	0.73541								0	0	0	0.1524	1	27496	27496		13.042	1.4022	1				54261	890	39487	39802	52950	52950					-0.07153923490500347
TLDPGYYTY	9	Unmodified	_TLDPGYYTY_					0	0	0		ENST00000574439.5_1_15:74472423-74490170:-|nuORF;nc|ENSG00000137868|Q9BX79-3|STRA6;ENSG00000137868|ENST00000395105|STRA6;nc|ENSG00000137868|Q9BX79-6|STRA6;nc|ENSG00000137868|Q9BX79-5|STRA6;nc|ENSG00000137868|Q9BX79-4|STRA6;chr15:74202282-74202418|298|15.96|0.4|5.33|-|ENST00000563965|STRA6,STRA6	ENST00000574439.5_1_15:74472423-74490170:-|nuORF	ENST00000574439.5_1_15:74472423-74490170:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	547.1476440429688	2	546.747847	1091.48114	-0.50279	-0.0002749	-0.28711	-0.00015698	-0.7899	-0.00043188	546.7476679483811	77.593	0.91576	77.593	77.235	78.15	0					44	17	3	0	0	0	0.012712	2	28300	28300;28432		92.822	48.415	1	9229300			54262	439	39488	39803	52951;52952	52951					-0.06093948784518943
TLDPGYYTY	9	Unmodified	_TLDPGYYTY_					0	0	0		ENST00000574439.5_1_15:74472423-74490170:-|nuORF;nc|ENSG00000137868|Q9BX79-3|STRA6;ENSG00000137868|ENST00000395105|STRA6;nc|ENSG00000137868|Q9BX79-6|STRA6;nc|ENSG00000137868|Q9BX79-5|STRA6;nc|ENSG00000137868|Q9BX79-4|STRA6;chr15:74202282-74202418|298|15.96|0.4|5.33|-|ENST00000563965|STRA6,STRA6	ENST00000574439.5_1_15:74472423-74490170:-|nuORF	ENST00000574439.5_1_15:74472423-74490170:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	547.1475219726562	2	546.747847	1091.48114	-0.79312	-0.00043364	-0.089193	-4.8766E-05	-0.88231	-0.0004824	546.7476823209691	76.989	1.1682	77.732	77.404	78.572	0.74293					49	22	3	0	0	0	0.01574	1	29199	29199		88.904	40.558	1	11187000			54263	439	39488	39803	52953	52953					-0.06093948784518943
TLDPNVTGV	9	Unmodified	_TLDPNVTGV_					0	0	0		ENSG00000110719|ENST00000265686|TCIRG1;ENST00000533005.5_1_11:67811756-67818283:+|nuORF;nc|ENSG00000110719|Q13488-2|TCIRG1	ENSG00000110719|ENST00000265686|TCIRG1	ENSG00000110719|ENST00000265686|TCIRG1	MULTI-MSMS	A375_MHC_IP_R1	1	916.5679321289062	1	915.478188	914.470912	-0.060197	-5.5109E-05	-0.0090272	-8.2642E-06	-0.069224	-6.3373E-05	915.4781471241661	63.35	1.2241	63.35	63.018	64.242	0					58	23	4	0	0	0	0.062639	1	22914	22914		59.368	19.419	1	35256000			54264	2944	39489	39804	52954	52954					0.010254882809135779
TLDPNVTGV	9	Unmodified	_TLDPNVTGV_					0	0	0		ENSG00000110719|ENST00000265686|TCIRG1;ENST00000533005.5_1_11:67811756-67818283:+|nuORF;nc|ENSG00000110719|Q13488-2|TCIRG1	ENSG00000110719|ENST00000265686|TCIRG1	ENSG00000110719|ENST00000265686|TCIRG1	MULTI-MSMS	A375_MHC_IP_R2	2	458.6426086425781	2	458.242732	914.470912	-0.36049	-0.00016519	-0.27842	-0.00012758	-0.63891	-0.00029278	458.242511547853	62.716	0.55473	63.459	63.13	63.685	0.74263					15	10	2	0	0	0	0.6324	1	23802	23802		13.042	2.2185	1	2863400			54265	2944	39489	39804	52955	52955					0.010254882809135779
TLDPNVTGV	9	Unmodified	_TLDPNVTGV_					0	0	0		ENSG00000110719|ENST00000265686|TCIRG1;ENST00000533005.5_1_11:67811756-67818283:+|nuORF;nc|ENSG00000110719|Q13488-2|TCIRG1	ENSG00000110719|ENST00000265686|TCIRG1	ENSG00000110719|ENST00000265686|TCIRG1	MULTI-MSMS	A375_MHC_IP_R2	2	916.2199096679688	1	915.478188	914.470912	-0.37773	-0.00034581	-0.24217	-0.0002217	-0.6199	-0.00056751	915.4779698953732	62.688	1.623	63.43	63.028	64.651	0.74263					66	31	4	0	0	0	0.066859	1	23886	23886		57.722	15.882	1	35902000			54266	2944	39489	39804	52956	52956					0.010254882809135779
TLDPQREQL	9	Unmodified	_TLDPQREQL_					0	0	0			REV__ENSG00000138411|ENST00000644978|HECW2	REV__ENSG00000138411|ENST00000644978|HECW2	MULTI-SECPEP	A375_MHC_IP_R1	1	549.6773071289062	2	550.290745	1098.56694	-0.46052	-0.00025342	-3.4882	-0.0019195	-3.9487	-0.002173	550.2908195697992	44.036	1.2754	44.036	43.351	44.626	0					61	24	3	0	0	0	0.58271	1	15203	15203		14.838	1.3304	1	5326900	+		54267	19094	39490	39805	52957	52957					0.02159636120995856
TLDPQTGLFY	10	Unmodified	_TLDPQTGLFY_					0	0	0		ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY;nc|ENSG00000158636|Q7Z589-6|EMSY	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	577.7264404296875	2	577.790047	1153.56554	0.050473	2.9163E-05	0.08596	4.9667E-05	0.13643	7.883E-05	577.7900131350109	109.08	1.374	109.08	108.66	110.04	0					66	26	4	0	0	0	0.0079374	1	40033	40033		93.938	40.105	1	14937000			54268	6320	39491	39806	52958	52958					-0.0050999796776523
TLDPQTGLFY	10	Unmodified	_TLDPQTGLFY_					0	0	0		ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY;nc|ENSG00000158636|Q7Z589-6|EMSY	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1154.94482421875	1	1154.57282	1153.56554	0.16991	0.00019617	0.18931	0.00021857	0.35922	0.00041474	1154.57293606035	108.35	0.86745	109.1	108.76	109.63	0.75436					41	16	3	0	0	0	0.37567	1	40817	40817		35.612	1.2105	1	9711500			54269	6320	39491	39806	52959	52959					-0.0050999796776523
TLDPQTGLFY	10	Unmodified	_TLDPQTGLFY_					0	0	0		ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY;nc|ENSG00000158636|Q7Z589-6|EMSY	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	577.7086181640625	2	577.790047	1153.56554	-0.17086	-9.8721E-05	-0.17578	-0.00010157	-0.34664	-0.00020029	577.7899616131363	108.39	1.378	109.14	108.71	110.09	0.75436					71	26	4	0	0	0	0.064809	1	40847	40847		71.708	22.154	1	16660000			54270	6320	39491	39806	52960	52960					-0.0050999796776523
TLDPQTGLFY	10	Unmodified	_TLDPQTGLFY_					0	0	0		ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY;nc|ENSG00000158636|Q7Z589-6|EMSY	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	1154.57282	1153.56554	0.25955	0.00029966	0.30435	0.00035139	0.5639	0.00065106	1154.5731297723894	109.09	0.86347	109.09	108.76	109.63	0	-0.0039161	5.3774E-05	NaN	35.612	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10220000			54271	6320	39491	39806							-0.0050999796776523
TLDQLKQV	8	Unmodified	_TLDQLKQV_					0	0	0			REV__ENSG00000149428|ENST00000617285|HYOU1	REV__ENSG00000149428|ENST00000617285|HYOU1	MULTI-MSMS	A375_MHC_IP_R1	1	472.67498779296875	2	472.7742	943.533846	-0.354	-0.00016736	0.28079	0.00013275	-0.073212	-3.4613E-05	472.77410905281107	62.27	0.81941	62.27	61.943	62.762	0					33	15	3	0	0	0	0.68964	1	22407	22407		37.974	1.847	1	7361400	+		54272	19679	39492	39807	52961	52961					0.059820540689429436
TLDQPNII	8	Unmodified	_TLDQPNII_					0	0	0			REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	MULTI-MSMS	A375_MHC_IP_R2	2	457.1610107421875	2	457.2531	912.491647	-0.47126	-0.00021549	0.042495	1.9431E-05	-0.42877	-0.00019605	457.25317611523406	62.171	0.70977	62.914	62.521	63.23	0.74263					19	13	2	0	0	0	0.75805	1	23460	23460		18.135	0	1	1833000	+		54273	19489	39493	39808	52962	52962					0.031900786605774556
TLDQQKPR	8	Unmodified	_TLDQQKPR_					0	0	0		nc|ENSG00000143772|P27987-2|ITPKB;ENSG00000143772|ENST00000429204|ITPKB	nc|ENSG00000143772|P27987-2|ITPKB	nc|ENSG00000143772|P27987-2|ITPKB	MULTI-SECPEP	A375_MHC_IP_R2	2	492.5755615234375	2	493.274898	984.535243	-0.65758	-0.00032437	-0.10191	-5.0272E-05	-0.75949	-0.00037464	493.27504857548695	62.267	0.45674	63.01	62.774	63.23	0.74263					12	8	2	0	0	0	0.97021	1	23594	23594		10.824	10.824	1	561640			54274	5431	39494	39809	52963	52963					0.042356881577120475
TLDQTLLEL	9	Unmodified	_TLDQTLLEL_					0	0	0		nc|ENSG00000198467|P07951-2|TPM2;ENST00000378300.9_1_9:35682080-35682179:-|nuORF;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000198467|P07951-2|TPM2	nc|ENSG00000198467|P07951-2|TPM2	MULTI-SECPEP	A375_MHC_IP_R1	1	522.6952514648438	2	523.292422	1044.57029	-0.14932	-7.8141E-05	-0.28668	-0.00015002	-0.43601	-0.00022816	523.2923475152235	126.55	0.35361	126.55	126.41	126.76	0					11	6	3	0	0	0	0.05021	1	48308	48308		78.728	26.46	1	11022000		+	54275	14852	39495	39810	52964	52964					0.04978886175013031
TLDQTLLEL	9	Unmodified	_TLDQTLLEL_					0	0	0		nc|ENSG00000198467|P07951-2|TPM2;ENST00000378300.9_1_9:35682080-35682179:-|nuORF;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000198467|P07951-2|TPM2	nc|ENSG00000198467|P07951-2|TPM2	MULTI-SECPEP	A375_MHC_IP_R2	2	522.6957397460938	2	523.292422	1044.57029	-0.49786	-0.00026053	-0.16244	-8.5002E-05	-0.6603	-0.00034553	523.2923996223616	126.13	0.40701	126.43	126.23	126.63	0.2951					15	7	3	0	0	0	0.40377	1	49365	49365		41.956	11.319	1	5814900		+	54276	14852	39495	39810	52965	52965					0.04978886175013031
TLDREQQSY	9	Unmodified	_TLDREQQSY_					0	0	0		nc|ENSG00000276547|Q9Y5G0-2|PCDHGB5;ENSG00000276547|ENST00000617380|PCDHGB5	nc|ENSG00000276547|Q9Y5G0-2|PCDHGB5	nc|ENSG00000276547|Q9Y5G0-2|PCDHGB5	MULTI-SECPEP	A375_MHC_IP_R1	1	569.6293334960938	2	570.27001	1138.52547	-0.26763	-0.00015262	0.1556	8.8735E-05	-0.11203	-6.3885E-05	570.270173215897	23.15	0.20147	23.15	22.974	23.176	0					5	3	2	0	0	0	0.43207	1	6303	6303		40.239	26.624	1	1872200			54277	10022	39496	39811	52966	52966					-0.03825544638334577
TLDREVIAV	9	Unmodified	_TLDREVIAV_					0	0	0		nc|ENSG00000140945|P55290-5|CDH13;ENSG00000140945|ENST00000567109|CDH13;nc|ENSG00000140945|P55290-4|CDH13	nc|ENSG00000140945|P55290-5|CDH13	nc|ENSG00000140945|P55290-5|CDH13	MULTI-SECPEP	A375_MHC_IP_R1	1	508.6922912597656	2	508.292756	1014.57096	-0.39778	-0.00020219	-3.5328	-0.0017957	-3.9306	-0.0019979	508.2908979653478	59.557	1.372	59.557	59.092	60.464	0					46	26	2	0	0	0	0.16595	1	21430	21430		53.404	0	1	5986300			54278	5195	39497	39812	52967	52967					0.06425725614712974
TLDREVIAV	9	Unmodified	_TLDREVIAV_					0	0	0		nc|ENSG00000140945|P55290-5|CDH13;ENSG00000140945|ENST00000567109|CDH13;nc|ENSG00000140945|P55290-4|CDH13	nc|ENSG00000140945|P55290-5|CDH13	nc|ENSG00000140945|P55290-5|CDH13	MULTI-SECPEP	A375_MHC_IP_R2	2	508.6922607421875	2	508.292756	1014.57096	-1.0966	-0.00055738	-0.17128	-8.7058E-05	-1.2678	-0.00064443	508.292628903225	58.716	1.0638	59.464	59.185	60.249	0.74714					30	20	2	0	0	0	0.30925	1	22197	22197		49.554	7.7147	1	7647700			54279	5195	39497	39812	52968	52968					0.06425725614712974
TLDRHAFL	8	Unmodified	_TLDRHAFL_					0	0	0		nc|ENSG00000196228|Q6IMI6|SULT1C3;ENSG00000196228|ENST00000681802|SULT1C3	nc|ENSG00000196228|Q6IMI6|SULT1C3	nc|ENSG00000196228|Q6IMI6|SULT1C3	MULTI-MSMS	A375_MHC_IP_R1	1	487.6815490722656	2	486.766709	971.518865	-0.059788	-2.9103E-05	-0.50473	-0.00024569	-0.56452	-0.00027479	486.76635599398844	53.956	0.96165	53.956	53.605	54.567	0					42	18	3	0	0	0	0.72008	1	19247	19247		28.487	0.85804	1	21234000			54280	9015	39498	39813	52969	52969					0.03196606991616591
TLDRHAFL	8	Unmodified	_TLDRHAFL_					0	0	0		nc|ENSG00000196228|Q6IMI6|SULT1C3;ENSG00000196228|ENST00000681802|SULT1C3	nc|ENSG00000196228|Q6IMI6|SULT1C3	nc|ENSG00000196228|Q6IMI6|SULT1C3	MULTI-MSMS	A375_MHC_IP_R2	2	487.16607666015625	2	486.766709	971.518865	-1.1473	-0.00055844	-0.24204	-0.00011782	-1.3893	-0.00067626	486.76651168996966	53.013	1.1729	53.764	53.436	54.609	0.75105					42	22	3	0	0	0	0.70206	1	20106	20106		34.102	7.2188	1	22160000			54281	9015	39498	39813	52970	52970					0.03196606991616591
TLDRLITRF	9	Unmodified	_TLDRLITRF_					0	0	0			REV__ENST00000529412.1_1_19:10464673-10468571:-|nuORF	REV__ENST00000529412.1_1_19:10464673-10468571:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	378.2680358886719	3	378.892507	1133.65569	-0.33196	-0.00012578	-0.17063	-6.465E-05	-0.50259	-0.00019043	378.8924196471851	25.104	0.5599	25.748	25.568	26.128	0.64368					16	10	3	0	0	0	0.75519	1	8480	8480		10.151	0	1	6815200	+		54282	17378	39499	39814	52971	52971					0.09421096151322672
TLDRLVPLNG	10	Unmodified	_TLDRLVPLNG_					0	0	0		ENST00000475593.5_1_3:195789726-195789780:-|nuORF	ENST00000475593.5_1_3:195789726-195789780:-|nuORF	ENST00000475593.5_1_3:195789726-195789780:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	549.1665649414062	2	549.319306	1096.62406	-0.61477	-0.0003377	-0.052586	-2.8886E-05	-0.66736	-0.00036659	549.319207046541	27.406	0.65772	27.406	27.179	27.836	0					27	12	3	0	0	0	0.90513	1	8360	8360		12.241	9.5055	1	14028000			54283	12420	39500	39815	52972	52972					0.0796110339738334
TLDRQLNHY	9	Unmodified	_TLDRQLNHY_					0	0	0		ENST00000523824.5_1_8:126104167-126163564:+|nuORF;ENSG00000156831|ENST00000287437|NSMCE2	ENST00000523824.5_1_8:126104167-126163564:+|nuORF	ENST00000523824.5_1_8:126104167-126163564:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	387.5997314453125	3	387.2	1158.57817	-0.58432	-0.00022625	-0.44607	-0.00017272	-1.0304	-0.00039897	387.1999984292407	25.405	0.7136	26.048	25.719	26.433	0.64368					23	11	3	0	0	0	0.65246	1	8492	8492		15.248	3.7306	1	8484000			54284	6211	39501	39816	52973	52973					0.005224582151413415
TLDSGALHSE	10	Unmodified	_TLDSGALHSE_					0	0	0		nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN;nc|ENSG00000188157|O00468-2|AGRN	nc|ENSG00000188157|O00468-4|AGRN	nc|ENSG00000188157|O00468-4|AGRN	MSMS	A375_MHC_IP_R2	2	515.1900024414062	2	515.246003	1028.47745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.079	1	42.853	42.353	43.353	0.7738								0	0	0	0.15158	1	15643	15643		14.838	0	1				54285	14823	39502	39817	52974	52974					-0.03564618558402799
TLDSITLMY	9	Oxidation (M)	_TLDSITLM(Oxidation (M))Y_		TLDSITLM(1)Y		TLDSITLM(100)Y	0	0	1		ENSG00000104643|ENST00000221086|MTMR9;ENST00000528389.1_1_8:11152715-11157663:+|nuORF;nc|ENSG00000104643|Q96QG7-2|MTMR9;ENST00000530200.1_1_8:11152806-11180294:+|nuORF	ENSG00000104643|ENST00000221086|MTMR9	ENSG00000104643|ENST00000221086|MTMR9	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1653442382812	2	536.765183	1071.51581	-0.7018	-0.0003767	0.31466	0.0001689	-0.38714	-0.0002078	536.7652212027025	99.887	0.75484	99.887	99.524	100.28	0					26	14	3	0	0	0	0.023756	1	36699	36699		104.8	56.453	1	1872600			54286	2524	39503	39818	52975	52975		113			-0.017084489680883053
TLDSITLMY	9	Oxidation (M)	_TLDSITLM(Oxidation (M))Y_		TLDSITLM(1)Y		TLDSITLM(82)Y	0	0	1		ENSG00000104643|ENST00000221086|MTMR9;ENST00000528389.1_1_8:11152715-11157663:+|nuORF;nc|ENSG00000104643|Q96QG7-2|MTMR9;ENST00000530200.1_1_8:11152806-11180294:+|nuORF	ENSG00000104643|ENST00000221086|MTMR9	ENSG00000104643|ENST00000221086|MTMR9	MULTI-SECPEP	A375_MHC_IP_R2	2	537.16455078125	2	536.765183	1071.51581	-0.67827	-0.00036407	-0.28275	-0.00015177	-0.96102	-0.00051584	537.2664844674582	99.309	1.0676	100.07	99.606	100.67	0.75977					34	20	2	0	0	0	0.023756	1	37609	37609		81.613	49.308	1	3656700			54287	2524	39503	39818	52976	52976		113			-0.017084489680883053
TLDSVQKFI	9	Unmodified	_TLDSVQKFI_					0	0	0			REV__ZNF195|p.L506V|1|0.36|ENSG00000005801|chr11:3359492-3359492|A/C|missense_variant	REV__ZNF195|p.L506V|1|0.36|ENSG00000005801|chr11:3359492-3359492|A/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1060180664062	2	525.795132	1049.57571	-0.76577	-0.00040264	0.77386	0.00040689	0.0080977	4.2577E-06	525.7949497001753	54.171	0.35479	54.922	54.763	55.118	0.75087					9	6	2	0	0	0	0.49205	1	20426	20426		27.629	0	1	1089300	+		54288	29028	39504	39819	52977	52977					0.052906097574805244
TLDTVNVHQY	10	Unmodified	_TLDTVNVHQY_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-MSMS	A375_MHC_IP_R1	1	397.5998229980469	3	397.199777	1188.5775	-0.11823	-4.6962E-05	-0.21528	-8.5509E-05	-0.33351	-0.00013247	397.1996873954649	75.574	0.50226	75.574	75.211	75.714	0					13	9	2	0	0	0	0.71944	1	27576	27576		1.7423	0.14999	1	1615500	+		54289	27230	39505	39820	52978	52978					-0.009243812245813388
TLDTVNVHQY	10	Unmodified	_TLDTVNVHQY_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	397.199777	1188.5775	-0.11823	-4.6962E-05	-0.21528	-8.5509E-05	-0.33351	-0.00013247	397.1996873954649	75.574	0.50226	75.574	75.211	75.714	0	-0.0012521	-3.1501E-05	NaN	1.7423	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1615500	+		54290	27230	39505	39820							-0.009243812245813388
TLDTVNVHQY	10	Unmodified	_TLDTVNVHQY_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	397.199777	1188.5775	-0.16867	-6.6997E-05	-0.16878	-6.704E-05	-0.33746	-0.00013404	397.19964356519404	74.839	0.45622	75.577	75.315	75.772	0.73751	0.0012521	2.3906E-05	NaN	1.7423	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1962300	+		54291	27230	39505	39820							-0.009243812245813388
TLEAINAQY	9	Unmodified	_TLEAINAQY_					0	0	0			REV__nc|ENSG00000150636|Q68D86-2|CCDC102B	REV__nc|ENSG00000150636|Q68D86-2|CCDC102B	MSMS	A375_MHC_IP_R1	1	511.6142578125	2	511.761289	1021.50803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.915	1	60.915	60.415	61.415	0								0	0	0	0.1521	1	21938	21938		18.135	1.1927	1		+		54292	19720	39506	39821	52979	52979					-0.0018684017335317549
TLEDEDVI	8	Unmodified	_TLEDEDVI_					0	0	0		ENST00000469673.1_1_22:31822577-31829954:+|nuORF;ENSG00000185721|ENST00000331457|DRG1	ENST00000469673.1_1_22:31822577-31829954:+|nuORF	ENST00000469673.1_1_22:31822577-31829954:+|nuORF	MSMS	A375_MHC_IP_R2	2	467.1728210449219	2	467.224205	932.433857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.552	1	54.303	53.803	54.803	0.75105								0	0	0	0.16876	1	20213	20213		9.3474	0	1				54293	8686	39507	39822	52980	52980					-0.03506228055516658
TLEDEESDSD	10	Unmodified	_TLEDEESDSD_					0	0	0			REV__PRCC|p.P164L|1|0.15|ENSG00000143294|chr1:156782304-156782304|C/T|missense_variant	REV__PRCC|p.P164L|1|0.15|ENSG00000143294|chr1:156782304-156782304|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	570.1631469726562	2	570.214763	1138.41497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.85	1	106.85	106.35	107.35	0								0	0	0	0.15308	1	39216	39216		10.824	4.1008	1		+		54294	27834	39508	39823	52981	52981					-0.14869854207881872
TLEDNRDWYY	10	Unmodified	_TLEDNRDWYY_					0	0	0		nc|ENSG00000065989|P27815-4|PDE4A;nc|ENSG00000065989|P27815-3|PDE4A;nc|ENSG00000065989|P27815-6|PDE4A;nc|ENSG00000065989|P27815-2|PDE4A;nc|ENSG00000065989|P27815-7|PDE4A;ENSG00000065989|ENST00000380702|PDE4A	nc|ENSG00000065989|P27815-4|PDE4A	nc|ENSG00000065989|P27815-4|PDE4A	MULTI-MSMS	A375_MHC_IP_R1	1	688.2010498046875	2	687.801674	1373.58879	-0.72688	-0.00049995	0.43431	0.00029872	-0.29257	-0.00020123	687.8019732042402	68.606	0.40711	68.606	68.361	68.769	0					11	7	2	0	0	0	0.29801	1	24893	24893		40.239	27.197	1	1317000			54295	1399	39509	39824	52982	52982					-0.08305603921075999
TLEDNRDWYY	10	Unmodified	_TLEDNRDWYY_					0	0	0		nc|ENSG00000065989|P27815-4|PDE4A;nc|ENSG00000065989|P27815-3|PDE4A;nc|ENSG00000065989|P27815-6|PDE4A;nc|ENSG00000065989|P27815-2|PDE4A;nc|ENSG00000065989|P27815-7|PDE4A;ENSG00000065989|ENST00000380702|PDE4A	nc|ENSG00000065989|P27815-4|PDE4A	nc|ENSG00000065989|P27815-4|PDE4A	MULTI-MATCH	A375_MHC_IP_R2	2		2	687.801674	1373.58879	-0.56586	-0.0003892	-0.59964	-0.00041243	-1.1655	-0.00080164	687.801240873414	68.177	0.55989	68.912	68.51	69.07	0.73511	0.15314	-0.0011348	NaN	40.239	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1060800			54296	1399	39509	39824							-0.08305603921075999
TLEDQALYNR	10	Unmodified	_TLEDQALYNR_					0	0	0		ENST00000464097.5_1_20:43249631-43251634:-|nuORF;ENST00000492931.5_1_20:43248477-43251634:-|nuORF;ENSG00000196839|ENST00000372874|ADA	ENST00000464097.5_1_20:43249631-43251634:-|nuORF	ENST00000464097.5_1_20:43249631-43251634:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	408.6067810058594	3	408.206932	1221.59897	0.072464	2.958E-05	-0.19572	-7.9895E-05	-0.12326	-5.0314E-05	408.20684236856863	42.156	0.40961	42.929	42.757	43.167	0.7724					17	7	3	0	0	0	0.86608	1	15693	15693		17.863	8.6194	1	2487800			54297	9089	39510	39825	52983	52983					-0.0029699619587972848
TLEEEDLRAIY	11	Unmodified	_TLEEEDLRAIY_					0	0	0		tr|U7SMU5|U7SMU5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01829PE=4SV=1	tr|U7SMU5|U7SMU5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01829PE=4SV=1	tr|U7SMU5|U7SMU5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01829PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	677.2173461914062	2	676.340632	1350.66671	-0.65886	-0.00044561	-0.76578	-0.00051793	-1.4246	-0.00096354	676.3403825716904	102.12	0.40491	102.88	102.72	103.12	0.76428					16	7	3	0	0	0	0.72649	1	38665	38665		12.241	1.4411	1	1733700			54298	29537	39511	39826	52984	52984					0.005404089442890836
TLEEEEMME	9	Unmodified	_TLEEEEMME_					0	0	0		nc|ENSG00000198160|Q8N108-16|MIER1;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108-15|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1;nc|ENSG00000198160|Q8N108-20|MIER1	nc|ENSG00000198160|Q8N108-16|MIER1	nc|ENSG00000198160|Q8N108-16|MIER1	MULTI-MSMS	A375_MHC_IP_R1	1	570.6658935546875	2	570.725397	1139.43624	-0.066033	-3.7687E-05	-2.6313	-0.0015018	-2.6974	-0.0015395	570.7239431036405	109.38	0.55867	109.38	108.97	109.52	0					12	10	2	0	0	0	0.55818	1	40032	40032		16.942	3.4344	1	710140			54299	9234	39512	39827	52985	52985					-0.12789883704363092
TLEEEFRESLI	11	Unmodified	_TLEEEFRESLI_					0	0	0			REV__nc|ENSG00000175600|Q9HAC7-4|SUGCT	REV__nc|ENSG00000175600|Q9HAC7-4|SUGCT	MULTI-MSMS	A375_MHC_IP_R2	2	683.7481689453125	2	683.348457	1364.68236	-0.88507	-0.00060481	-0.069722	-4.7645E-05	-0.95479	-0.00065246	683.3483970017321	40.918	0.81277	41.693	41.386	42.198	0.77451					48	15	5	0	0	0	0.36212	1	15128	15128		41.956	0	1	46731000	+		54300	21354	39513	39828	52986	52986					0.014606954613327616
TLEEKNEFPED	11	Unmodified	_TLEEKNEFPED_					0	0	0		nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2;ENST00000367112.1_2_6:158500311-158517393:+|nuORF	nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-3|SYNJ2	MULTI-SECPEP	A375_MHC_IP_R1	1	451.6080322265625	3	450.873507	1349.59869	-0.3354	-0.00015123	0.23534	0.00010611	-0.10006	-4.5116E-05	451.20806184694817	36.92	0.50411	36.92	36.644	37.148	0					14	9	2	0	0	0	0.99916	1	12446	12446		2.4348	0	1	3755100			54301	1671	39514	39829	52987	52987					-0.06212460706365164
TLEELQERL	9	Unmodified	_TLEELQERL_					0	0	0		nc|ENSG00000173040|Q86UK5-2|EVC2;nc|ENSG00000173040|Q86UK5-3|EVC2;ENSG00000173040|ENST00000344408|EVC2	nc|ENSG00000173040|Q86UK5-2|EVC2	nc|ENSG00000173040|Q86UK5-2|EVC2	MULTI-MSMS	A375_MHC_IP_R2	2	377.6048583984375	3	377.539911	1129.5979	0.11977	4.5218E-05	-2.3473	-0.0008862	-2.2275	-0.00084098	377.5392545392701	40.13	0.2028	40.905	40.777	40.98	0.77451					5	3	2	0	0	0	0.55818	1	14859	14859		11.495	0	1	955440			54302	7761	39515	39830	52988	52988					0.038287894352379226
TLEEPECDEFL	11	Unmodified	_TLEEPECDEFL_					0	0	0			REV__ENSG00000178177|ENST00000635767|LCORL;REV__nc|ENSG00000178177|Q8N3X6|LCORL	REV__ENSG00000178177|ENST00000635767|LCORL	MSMS	A375_MHC_IP_R2	2	662.6541137695312	2	662.784301	1323.55405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.112	1	99.872	99.372	100.37	0.75977								0	0	0	0.16249	1	37598	37598		5.7319	1.7875	1		+		54303	21491;27381	39516	39831	52989	52989					-0.09478607844084763
TLEERIEFSEL	11	Unmodified	_TLEERIEFSEL_					0	0	0		ENST00000482178.5_1_22:41973324-41980100:-|nuORF;ENSG00000100417|ENST00000216259|PMM1	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	683.7476196289062	2	683.348457	1364.68236	-0.97492	-0.00066621	0.33845	0.00023128	-0.63647	-0.00043493	683.3486667683991	41.546	0.86646	41.546	41.266	42.132	0					48	16	4	0	0	0	0.36212	1	14314	14314		41.956	0	1	55921000			54304	2178	39517	39832	52990	52990					0.01460695461355499
TLEERIEFSEL	11	Unmodified	_TLEERIEFSEL_					0	0	0		ENST00000482178.5_1_22:41973324-41980100:-|nuORF;ENSG00000100417|ENST00000216259|PMM1	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	683.348457	1364.68236	-0.88507	-0.00060481	-0.069722	-4.7645E-05	-0.95479	-0.00065246	683.3483970017321	40.918	0.81277	41.693	41.386	42.198	0.77451	0.073373	-0.00025622	NaN	41.956	48	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46731000			54305	2178	39517	39832							0.01460695461355499
TLEFILGFQ	9	Unmodified	_TLEFILGFQ_					0	0	0			REV__CELF3|p.R32L|1|0.27|ENSG00000159409|chr1:151715926-151715926|C/A|missense_variant	REV__CELF3|p.R32L|1|0.27|ENSG00000159409|chr1:151715926-151715926|C/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	355.9251403808594	3	356.530576	1066.5699	-0.60239	-0.00021477	0.50204	0.00017899	-0.10036	-3.5781E-05	356.53082843917576	26.475	0.66029	27.135	26.754	27.414	0.65992					19	12	2	0	0	0	0.65246	1	8806	8806		15.248	4.449	1	2271300	+		54306	15634	39518	39833	52991	52991					0.039275112458199146
TLEFLDKFKE	10	Unmodified	_TLEFLDKFKE_					0	0	0		tr|U7SZW9|U7SZW9_FUSNUOrotidine5'-phosphatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrFPE=3SV=1	tr|U7SZW9|U7SZW9_FUSNUOrotidine5'-phosphatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrFPE=3SV=1	tr|U7SZW9|U7SZW9_FUSNUOrotidine5'-phosphatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrFPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	424.2955017089844	3	423.895695	1268.66525	0.029392	1.2459E-05	0.15462	6.5544E-05	0.18402	7.8003E-05	423.8957701420571	62.399	0.46186	62.399	62.198	62.66	0					13	8	2	0	0	0	0.71455	1	22562	22562		5.7834	0.38072	1	1315900			54307	29870	39519	39834	52992	52992					0.04166819646161457
TLEFSLAASL	10	Unmodified	_TLEFSLAASL_					0	0	0		ENST00000498923.2_1_3:131080835-131080913:+|nuORF	ENST00000498923.2_1_3:131080835-131080913:+|nuORF	ENST00000498923.2_1_3:131080835-131080913:+|nuORF	MSMS	A375_MHC_IP_R2	2	526.6771850585938	2	526.28714	1050.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.551	1	94.296	93.796	94.796	0.74474								0	0	0	0.14673	1	35563	35563		24.021	0	1				54308	12770	39520	39835	52993	52993					0.03646903520575506
TLEGWTSTAY	10	Unmodified	_TLEGWTSTAY_					0	0	0			REV__nc|ENSG00000164520|Q8TD07-6|RAET1E	REV__nc|ENSG00000164520|Q8TD07-6|RAET1E	MSMS	A375_MHC_IP_R1	1	564.7013549804688	2	564.764029	1127.5135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.177	1	48.177	47.677	48.677	0								0	0	0	0.14862	1	16981	16981		20.454	2.3073	1		+		54309	27325	39521	39836	52994	52994					-0.0451516138155057
TLEHGIDEV	9	Unmodified	_TLEHGIDEV_					0	0	0			REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	A375_MHC_IP_R2	2	507.1504211425781	2	506.750921	1011.48729	-0.52945	-0.0002683	-0.70669	-0.00035812	-1.2361	-0.00062641	506.75050733738453	114.03	0.65145	114.74	114.43	115.08	0.70985					33	12	3	0	0	0	0.32899	1	42970	42970		28.487	5.3384	1	17623000	+		54310	20541	39522	39837	52995	52995					-0.017994305530010024
TLEHGIDEV	9	Unmodified	_TLEHGIDEV_					0	0	0			REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	506.750921	1011.48729	-0.52945	-0.0002683	-0.70669	-0.00035812	-1.2361	-0.00062641	506.75050733738453	114.03	0.65145	114.74	114.43	115.08	0.70985	-0.054656	-6.6535E-05	NaN	28.487	33	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17623000	+		54311	20541	39522	39837							-0.017994305530010024
TLELESPSL	9	Unmodified	_TLELESPSL_					0	0	0		nc|ENSG00000101057|P10244-2|MYBL2;ENSG00000101057|ENST00000217026|MYBL2	nc|ENSG00000101057|P10244-2|MYBL2	nc|ENSG00000101057|P10244-2|MYBL2	MULTI-SECPEP	A375_MHC_IP_R1	1	495.1584167480469	2	494.763497	987.512442	-0.059241	-2.931E-05	0.80015	0.00039589	0.74091	0.00036658	494.7639947768322	48.235	0.35554	48.235	47.97	48.325	0					15	6	4	0	0	0	0.71541	1	16898	16898		7.2892	3.3448	1	1438600			54312	2248	39523	39838	52996	52996					0.01818624249574441
TLELRVKEL	9	Unmodified	_TLELRVKEL_					0	0	0			REV__ENSG00000167202|ENST00000300584|TBC1D2B	REV__ENSG00000167202|ENST00000300584|TBC1D2B	MULTI-SECPEP	A375_MHC_IP_R2	2	551.2366943359375	2	550.837331	1099.66011	-0.97672	-0.00053802	-0.028616	-1.5763E-05	-1.0053	-0.00055378	550.8373340397878	65.984	0.66228	66.722	66.375	67.037	0.73812					25	12	3	0	0	0	0.74169	1	25001	25001		16.149	0	1	1864700	+		54313	20739	39524	39839	52997	52997					0.11426560574227551
TLELTGLEGF	10	Unmodified	_TLELTGLEGF_					0	0	0		ENSG00000109182|ENST00000226432|CWH43	ENSG00000109182|ENST00000226432|CWH43	ENSG00000109182|ENST00000226432|CWH43	MULTI-SECPEP	A375_MHC_IP_R1	1	540.1873779296875	2	540.284597	1078.55464	-0.52309	-0.00028262	0.60214	0.00032533	0.079052	4.2711E-05	540.2844672618166	71.118	0.56445	71.118	70.8	71.364	0					16	10	2	0	0	0	0.61429	1	25794	25794		24.021	0	1	1384300			54314	2861	39525	39840	52998	52998					0.018505996579506245
TLENQNLYL	9	Unmodified	_TLENQNLYL_					0	0	0		nc|ENSG00000160746|Q9NW15-5|ANO10;ENSG00000160746|ENST00000292246|ANO10;nc|ENSG00000160746|Q9NW15-2|ANO10	nc|ENSG00000160746|Q9NW15-5|ANO10	nc|ENSG00000160746|Q9NW15-5|ANO10	MULTI-SECPEP	A375_MHC_IP_R1	1	369.62335205078125	3	369.860873	1106.56079	0.54499	0.00020157	-0.2932	-0.00010844	0.2518	9.3129E-05	369.8608994761905	44.344	0.25574	44.344	44.165	44.42	0					5	4	2	0	0	0	0.71541	1	15443	15443		0.86438	0.65752	1	475890			54315	6438	39526	39841	52999	52999					0.011771178894605328
TLEPLDTGLS	10	Unmodified	_TLEPLDTGLS_					0	0	0		ENSG00000178105|ENST00000322536|DDX10;ENST00000524979.1_1_11:108739044-108811147:+|nuORF	ENSG00000178105|ENST00000322536|DDX10	ENSG00000178105|ENST00000322536|DDX10	MULTI-SECPEP	A375_MHC_IP_R2	2	523.149658203125	2	523.274229	1044.53391	-0.58136	-0.00030421	-1.0517	-0.00055031	-1.633	-0.00085452	523.2738116050773	98.175	1.0691	98.935	98.182	99.251	0.75977					38	20	3	0	0	0	0.78945	1	37301	37301		13.906	7.1829	1	5218300			54316	8134	39527	39842	53000	53000					0.013420092782780557
TLEQHENF	8	Unmodified	_TLEQHENF_					0	0	0		nc|ENSG00000029534|P16157-14|ANK1;nc|ENSG00000029534|P16157-8|ANK1;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-21|ANK1;nc|ENSG00000029534|P16157|ANK1;ENSG00000029534|ENST00000289734|ANK1;nc|ENSG00000029534|P16157-16|ANK1;nc|ENSG00000029534|P16157-5|ANK1;nc|ENSG00000029534|P16157-10|ANK1;ENST00000524227.5_1_8:41525962-41555361:-|nuORF;nc|ENSG00000029534|P16157-15|ANK1;nc|ENSG00000029534|P16157-13|ANK1;nc|ENSG00000029534|P16157-4|ANK1;nc|ENSG00000029534|P16157-7|ANK1;nc|ENSG00000029534|P16157-6|ANK1;nc|ENSG00000029534|P16157-9|ANK1;nc|ENSG00000029534|P16157-11|ANK1;nc|ENSG00000029534|P16157-2|ANK1	nc|ENSG00000029534|P16157-14|ANK1	nc|ENSG00000029534|P16157-14|ANK1	MSMS	A375_MHC_IP_R2	2	509.16314697265625	2	509.235439	1016.45632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.386	1	89.118	88.618	89.618	0.7318								0	0	0	0.16876	1	33635	33635		13.508	0.97634	1				54317	1105	39528	39843	53001	53001					-0.05124583867234378
TLEQRLLV	8	Unmodified	_TLEQRLLV_					0	0	0		ENSG00000092036|ENST00000541587|HAUS4;ENST00000554651.5_1_14:23417204-23426210:-|nuORF;ENST00000554373.5_1_14:23417204-23426142:-|nuORF	ENSG00000092036|ENST00000541587|HAUS4	ENSG00000092036|ENST00000541587|HAUS4	MULTI-MSMS	A375_MHC_IP_R1	1	486.69757080078125	2	486.297842	970.581131	-0.41508	-0.00020185	0.42395	0.00020617	0.0088715	4.3142E-06	486.2977935618416	90.342	0.50768	90.342	90.083	90.59	0					18	9	3	0	0	0	0.68964	1	33214	33214		37.974	1.847	1	1681100			54318	1991	39529	39844	53002	53002					0.09466333339946686
TLERDVMW	8	Unmodified	_TLERDVMW_					0	0	0			REV__ENST00000520907.1_1_19:37398825-37406144:-|nuORF	REV__ENST00000520907.1_1_19:37398825-37406144:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	524.6283569335938	2	525.257859	1048.50117	-0.78212	-0.00041082	-1.7101	-0.00089823	-2.4922	-0.001309	525.2567890075702	57.94	0.75999	58.689	58.019	58.779	0.74894					20	14	2	0	0	0	0.96266	1	21914	21914		11.64	0	1	1117200	+		54319	21926	39530	39845	53003	53003					-0.021144763255506405
TLERREKHEKR	11	Unmodified	_TLERREKHEKR_					0	0	0		nc|ENSG00000151276|Q96QZ7|MAGI1;nc|ENSG00000151276|Q96QZ7-7|MAGI1;nc|ENSG00000151276|Q96QZ7-6|MAGI1;ENSG00000151276|ENST00000402939|MAGI1	nc|ENSG00000151276|Q96QZ7|MAGI1	nc|ENSG00000151276|Q96QZ7|MAGI1	MULTI-SECPEP	A375_MHC_IP_R2	2	494.6865539550781	3	494.614696	1480.82226	-0.44977	-0.00022246	0.2862	0.00014156	-0.16357	-8.0904E-05	494.6144934384274	132.01	0.71153	132.2	131.95	132.66	0.18953					16	13	2	0	0	0	1.0012	1	52070	52070		1.2148	0.76031	1	1795400			54320	14678	39531	39846	53004	53004					0.10107917309051118
TLERREKHEKR	11	Unmodified	_TLERREKHEKR_					0	0	0		nc|ENSG00000151276|Q96QZ7|MAGI1;nc|ENSG00000151276|Q96QZ7-7|MAGI1;nc|ENSG00000151276|Q96QZ7-6|MAGI1;ENSG00000151276|ENST00000402939|MAGI1	nc|ENSG00000151276|Q96QZ7|MAGI1	nc|ENSG00000151276|Q96QZ7|MAGI1	MULTI-MATCH	A375_MHC_IP_R1	1		3	494.614696	1480.82226	-0.60423	-0.00029886	0.94369	0.00046676	0.33946	0.0001679	494.6151670781061	132.06	0.40092	132.06	131.83	132.23	0	-0.068446	0.00025569	NaN	1.2148	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3101700			54321	14678	39531	39846							0.10107917309051118
TLESGRSF	8	Unmodified	_TLESGRSF_					0	0	0			REV__ZNF420|p.T470Rfs*6|1|0.1|ENSG00000197050|chr19:37128397-37128398|-/TAGGGCTTTT|frameshift_variant	REV__ZNF420|p.T470Rfs*6|1|0.1|ENSG00000197050|chr19:37128397-37128398|-/TAGGGCTTTT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	449.1270446777344	2	448.727249	895.439946	-0.16983	-7.6208E-05	0.0060346	2.7079E-06	-0.1638	-7.35E-05	448.7271241757248	86.392	0.46098	87.125	86.896	87.357	0.733					18	8	3	0	0	0	0.95423	1	32880	32880		12.532	0.89125	1	1883000	+		54322	21613	39532	39847	53005	53005					-0.011956650333331709
TLESLKKLR	9	Unmodified	_TLESLKKLR_					0	0	0			REV__nc|ENSG00000072163|Q7Z4I7-3|LIMS2	REV__nc|ENSG00000072163|Q7Z4I7-3|LIMS2	MULTI-SECPEP	A375_MHC_IP_R2	2	544.745361328125	2	544.345323	1086.67609	-0.62034	-0.00033768	0.10187	5.5455E-05	-0.51847	-0.00028223	544.3452362185369	142.2	0.60941	142.24	142.03	142.64	0.030731					17	11	3	0	0	0	0.81254	1	55612	55612		2.0598	0	1	820080	+		54323	16600	39533	39848	53006	53006					0.13622266811125883
TLESPFKGQL	10	Unmodified	_TLESPFKGQL_					0	0	0		ENST00000543677.1_1_12:121461645-121461930:-|nuORF	ENST00000543677.1_1_12:121461645-121461930:-|nuORF	ENST00000543677.1_1_12:121461645-121461930:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	559.6973266601562	2	560.305864	1118.59717	-0.64527	-0.00036155	0.28035	0.00015708	-0.36492	-0.00020447	560.3059311573974	84.111	1.2699	84.111	83.736	85.005	0					43	24	3	0	0	0	0.86608	1	30837	30837		20.415	20.415	1	3370000			54324	13313	39534	39849	53007	53007					0.04261994786179457
TLESPFKGQL	10	Unmodified	_TLESPFKGQL_					0	0	0		ENST00000543677.1_1_12:121461645-121461930:-|nuORF	ENST00000543677.1_1_12:121461645-121461930:-|nuORF	ENST00000543677.1_1_12:121461645-121461930:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	560.305864	1118.59717	-0.61391	-0.00034398	-0.10958	-6.1398E-05	-0.72349	-0.00040537	560.3053350279675	83.166	0.8129	83.906	83.645	84.458	0.73962	-0.10248	-0.00035566	NaN	20.415	39	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3887400			54325	13313	39534	39849							0.04261994786179457
TLETILISNN	10	Unmodified	_TLETILISNN_					0	0	0		ENSG00000066557|ENST00000370952|LRRC40	ENSG00000066557|ENST00000370952|LRRC40	ENSG00000066557|ENST00000370952|LRRC40	MULTI-MSMS	A375_MHC_IP_R2	2	559.7095336914062	2	559.308603	1116.60265	-0.4958	-0.00027731	1.434	0.00080203	0.93817	0.00052472	559.3096169350816	143.49	0.1501	143.51	143.39	143.54	0.024414					4	2	2	0	0	0	0.72006	1	56079	56079		6.2058	0	1	894940			54326	1414	39535	39850	53008	53008					0.04901673578001464
TLEVYRKI	8	Unmodified	_TLEVYRKI_					0	0	0			REV__ENSG00000102802|ENST00000380482|MEDAG	REV__ENSG00000102802|ENST00000380482|MEDAG	MULTI-SECPEP	A375_MHC_IP_R2	2	511.0366516113281	2	511.305667	1020.59678	-0.57478	-0.00029389	-0.48541	-0.00024819	-1.0602	-0.00054208	511.30490201328973	85.73	0.4057	86.466	86.341	86.746	0.73601					10	7	2	0	0	0	0.90224	1	32687	32687		19.439	0.18201	1	1765700	+		54327	17233	39536	39851	53009	53009					0.08730619856999056
TLEVYRKI	8	Unmodified	_TLEVYRKI_					0	0	0			REV__ENSG00000102802|ENST00000380482|MEDAG	REV__ENSG00000102802|ENST00000380482|MEDAG	MULTI-MATCH	A375_MHC_IP_R1	1		2	511.305667	1020.59678	-0.62719	-0.00032069	-1.1539	-0.00058997	-1.781	-0.00091066	511.3056016206651	86.697	0.45584	86.697	86.477	86.933	0	0.11563	-0.00012	NaN	19.439	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1093300	+		54328	17233	39536	39851							0.08730619856999056
TLFCEEDDQ	9	Unmodified	_TLFCEEDDQ_					0	0	0		ENST00000453424.6_1_10:46028603-46028717:-|nuORF	ENST00000453424.6_1_10:46028603-46028717:-|nuORF	ENST00000453424.6_1_10:46028603-46028717:-|nuORF	MSMS	A375_MHC_IP_R1	1	550.1763305664062	2	550.216054	1098.41756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.665	1	55.665	55.165	56.165	0								0	0	0	0.15486	1	19915	19915		7.9102	0	1				54329	12096	39537	39852	53010	53010					-0.12771677283944882
TLFDYEVRL	9	Unmodified	_TLFDYEVRL_					0	0	0		nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043|ENST00000650932|UHRF1	nc|ENSG00000276043|Q96T88-2|UHRF1	nc|ENSG00000276043|Q96T88-2|UHRF1	MULTI-MSMS	A375_MHC_IP_R2	2	578.34375	2	578.305864	1154.59717	-0.22396	-0.00012951	-1.5294	-0.00088449	-1.7534	-0.001014	578.3055005754621	105.94	1.3754	106.7	105.97	107.34	0.75977					65	26	4	0	0	0	0.1915	1	40123	40123		38.615	20.468	1	9609200			54330	10017	39538	39853	53011	53011					0.02605994786199517
TLFEEGGL	8	Unmodified	_TLFEEGGL_					0	0	0			REV__BRINP2|p.S157F|1|0.38|ENSG00000198797|chr1:177257185-177257185|C/T|missense_variant	REV__BRINP2|p.S157F|1|0.38|ENSG00000198797|chr1:177257185-177257185|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	433.28521728515625	2	433.218726	864.422899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.58	1	112.3	111.8	112.8	0.72458								0	0	0	0.16876	1	42068	42068		5.7604	0	1		+		54331	15530	39539	39854	53012	53012					-0.01473585639121211
TLFEHLTGTD	10	Unmodified	_TLFEHLTGTD_					0	0	0		ENST00000509447.1_1_3:139280227-139292506:-|nuORF	ENST00000509447.1_1_3:139280227-139292506:-|nuORF	ENST00000509447.1_1_3:139280227-139292506:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	379.2804260253906	3	378.520628	1132.54005	0.23059	8.7282E-05	0.031253	1.183E-05	0.26184	9.9112E-05	378.52060368749346	33.107	0.50669	33.107	32.887	33.393	0					20	9	3	0	0	0	0.8125	1	10821	10821		11.518	5.326	1	8040200			54332	12891	39540	39855	53013	53013					-0.020914724902013404
TLFIELILIL	10	Unmodified	_TLFIELILIL_					0	0	0			REV__ENST00000341166.3_1_8:99205208-99215350:-|nuORF	REV__ENST00000341166.3_1_8:99205208-99215350:-|nuORF	MSMS	A375_MHC_IP_R1	1	594.7548828125	2	594.386125	1186.7577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.181	1	93.181	92.681	93.681	0								0	0	0	0.1552	1	34250	34250		3.9444	0	1		+		54333	23729	39541	39856	53014	53014					0.17178949450385517
TLFIMSEIF	9	Unmodified	_TLFIMSEIF_					0	0	0		nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28;nc|ENSG00000214944|Q8N1W1-5|ARHGEF28	nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	MSMS	A375_MHC_IP_R2	2	550.6170654296875	2	550.788461	1099.56237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.718	1	51.472	50.972	51.972	0.75406								0	0	0	0.15283	1	19076	19076		16.942	2.104	1				54334	9632	39542	39857	53015	53015					0.0165703565385229
TLFKLLLGR	9	Unmodified	_TLFKLLLGR_					0	0	0			REV__TEP1|p.S1559L|1|0.43|ENSG00000129566|chr14:20381017-20381017|G/A|missense_variant	REV__TEP1|p.S1559L|1|0.43|ENSG00000129566|chr14:20381017-20381017|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	354.63397216796875	3	354.234093	1059.68045	-0.22435	-7.9472E-05	-0.23189	-8.2144E-05	-0.45624	-0.00016162	354.2339316951216	82.779	0.60388	83.522	83.297	83.901	0.74293					17	11	2	0	0	0	0.53367	1	31474	31474		12.873	1.3547	1	2350300	+		54335	28095	39543	39858	53016	53016					0.15299776024698986
TLFKTHDKDS	10	Unmodified	_TLFKTHDKDS_					0	0	0		ENST00000502926.1_2_5:140806427-140807822:+|nuORF	ENST00000502926.1_2_5:140806427-140807822:+|nuORF	ENST00000502926.1_2_5:140806427-140807822:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	595.6615600585938	2	596.303852	1190.59315	-0.63514	-0.00037874	2.4013	0.0014319	1.7662	0.0010532	596.3047375030118	106.78	0.35526	107.54	107.44	107.8	0.75977					9	6	2	0	0	0	0.92227	1	40367	40367		5.2969	1.3525	1	1362000			54336	12803	39544	39859	53017	53017					0.005479052925011274
TLFLEFWKRRQ	11	Unmodified	_TLFLEFWKRRQ_					0	0	0		nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6	nc|ENSG00000177119|Q4KMQ2-3|ANO6	nc|ENSG00000177119|Q4KMQ2-3|ANO6	MSMS	A375_MHC_IP_R2	2	508.663818359375	3	508.620899	1522.84087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.307	1	68.043	67.543	68.543	0.73631								0	0	0	0.16334	1	25497	25497		1.3296	0	1				54337	8063	39545	39860	53018	53018					0.10036078950906813
TLFLVAMKW	9	Unmodified	_TLFLVAMKW_					0	0	0			REV__ENST00000584755.1_1_17:21730896-21731370:+|nuORF	REV__ENST00000584755.1_1_17:21730896-21731370:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	369.6269226074219	3	370.212301	1107.61507	0.27906	0.00010331	1.3809	0.00051124	1.66	0.00061455	370.2128023587792	24.993	0.30398	24.993	24.749	25.053	0					6	5	2	0	0	0	0.80101	1	7222	7222		1.0715	0	1	1515400	+		54338	26371	39546	39861	53019	53019					0.0655703850734426
TLFNVIKSV	9	Unmodified	_TLFNVIKSV_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	A375_MHC_IP_R1	1	511.20745849609375	2	510.808042	1019.60153	-0.32041	-0.00016367	0.11817	6.0361E-05	-0.20224	-0.00010331	510.8080551916616	93.244	1.3696	93.244	92.922	94.291	0					50	26	3	0	0	0	0.011143	1	34222	34222		125.04	45.441	1	7096400			54339	2058	39547	39862	53020	53020					0.09251503999769284
TLFNVIKSV	9	Unmodified	_TLFNVIKSV_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	A375_MHC_IP_R2	2	511.207275390625	2	510.808042	1019.60153	-0.66904	-0.00034175	0.059483	3.0384E-05	-0.60955	-0.00031136	510.80804094053576	92.195	1.2657	92.934	92.684	93.95	0.73901					52	24	3	0	0	0	0.0055952	1	35040	35040		163.69	74.286	1	6894200			54340	2058	39547	39862	53021	53021					0.09251503999769284
TLFPCWIFLFS	11	Unmodified	_TLFPCWIFLFS_					0	0	0		ENST00000398316.7_1_13:49684467-49684536:+|nuORF	ENST00000398316.7_1_13:49684467-49684536:+|nuORF	ENST00000398316.7_1_13:49684467-49684536:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	458.96942138671875	3	458.570265	1372.68897	-0.37333	-0.0001712	-1.0206	-0.00046802	-1.3939	-0.00063922	458.5695862329803	31.459	0.45961	32.178	31.923	32.383	0.71857					17	8	3	0	0	0	0.72728	1	11137	11137		6.2344	0.71106	1	4905200			54341	11518	39548	39863	53022	53022					0.017529618789922097
TLFPGKVHSL	10	Unmodified	_TLFPGKVHSL_					0	0	0		WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENSG00000178252|ENST00000608424|WDR6;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	367.2818908691406	3	366.88172	1097.62333	0.40243	0.00014764	0.24405	8.9537E-05	0.64648	0.00023718	366.88174662863037	51.551	1.1178	51.551	51.219	52.336	0					50	21	4	0	0	0	0.51228	1	18265	18265		42.835	27.587	1	16584000			54342	8149;11731;12639	39549	39864	53023	53023					0.07842308748331561
TLFPGKVHSL	10	Unmodified	_TLFPGKVHSL_					0	0	0		WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENSG00000178252|ENST00000608424|WDR6;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	367.2818298339844	3	366.88172	1097.62333	0.010675	3.9166E-06	0.34552	0.00012677	0.3562	0.00013068	366.8818000141511	50.633	1.1131	51.387	51.057	52.17	0.75406					56	21	4	0	0	0	0.30731	1	18994	18994		48.073	48.073	1	18826000			54343	8149;11731;12639	39549	39864	53024	53024					0.07842308748331561
TLFPGKVHSL	10	Unmodified	_TLFPGKVHSL_					0	0	0		WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENSG00000178252|ENST00000608424|WDR6;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	550.2180786132812	2	549.818941	1097.62333	-0.90761	-0.00049902	0.14091	7.7475E-05	-0.7667	-0.00042154	549.8189548251232	50.625	0.60672	51.379	51.108	51.715	0.75406					25	11	3	0	0	0	0.52855	1	19027	19027		35.612	35.612	1	4091800			54344	8149;11731;12639	39549	39864	53025	53025					0.07842308748331561
TLFPRRIFL	9	Unmodified	_TLFPRRIFL_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	A375_MHC_IP_R1	1	388.6416015625	3	388.241359	1161.70225	0.060657	2.3549E-05	0.28038	0.00010885	0.34103	0.0001324	388.2414469652719	90.098	1.7223	90.098	89.73	91.452	0					80	33	4	0	0	0	0.31062	1	33058	33058		29.841	3.5724	1	13053000			54345	7927	39550	39865	53026	53026					0.12786580773263267
TLFPRRIFL	9	Unmodified	_TLFPRRIFL_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	A375_MHC_IP_R2	2	388.9754638671875	3	388.241359	1161.70225	-0.069866	-2.7125E-05	0.25002	9.7069E-05	0.18016	6.9944E-05	388.2414493331853	89.137	1.267	89.868	89.584	90.851	0.7318					67	24	4	0	0	0	0.29123	2	33888	33888;34136		31.268	10.854	1	18882000			54346	7927	39550	39865	53027;53028	53027					0.12786580773263267
TLFQGIKTV	9	Unmodified	_TLFQGIKTV_					0	0	0		ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33;nc|ENSG00000077254|Q8TEY7-3|USP33	ENSG00000077254|ENST00000370794|USP33	ENSG00000077254|ENST00000370794|USP33	MULTI-SECPEP	A375_MHC_IP_R1	1	504.2001953125	2	503.800217	1005.58588	-0.26028	-0.00013113	-0.28181	-0.00014198	-0.54209	-0.0002731	503.80011499322376	72.619	1.013	72.619	72.119	73.132	0					27	19	2	0	0	0	0.10495	1	26421	26421		57.249	3.8451	1	2496400			54347	1651	39551	39866	53029	53029					0.08331217482714237
TLFQGIKTV	9	Unmodified	_TLFQGIKTV_					0	0	0		ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33;nc|ENSG00000077254|Q8TEY7-3|USP33	ENSG00000077254|ENST00000370794|USP33	ENSG00000077254|ENST00000370794|USP33	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1998291015625	2	503.800217	1005.58588	-0.96687	-0.00048711	0.36707	0.00018493	-0.5998	-0.00030218	503.8004418569107	71.736	1.0119	72.47	72.162	73.174	0.73421					27	19	3	0	0	0	0.062502	1	27203	27203		57.249	7.6948	1	2321500			54348	1651	39551	39866	53030	53030					0.08331217482714237
TLFTAKLSL	9	Unmodified	_TLFTAKLSL_					0	0	0			REV__ENST00000046640.7_1_17:3564142-3564217:+|nuORF	REV__ENST00000046640.7_1_17:3564142-3564217:+|nuORF	MSMS	A375_MHC_IP_R1	1	497.2016296386719	2	497.302593	992.590633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.732	1	69.732	69.232	70.232	0								0	0	0	0.15142	1	25309	25309		19.257	0	1		+		54349	23007	39552	39867	53031	53031					0.09404101625477779
TLFTKELVL	9	Unmodified	_TLFTKELVL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;ENST00000470723.5_1_7:127589266-127648128:+|nuORF;ENST00000467238.1_1_7:127631037-127637644:+|nuORF	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	A375_MHC_IP_R1	1	532.723388671875	2	532.323525	1062.6325	-0.60939	-0.00032439	-0.035792	-1.9053E-05	-0.64519	-0.00034345	532.3234154753437	98.65	1.272	98.65	98.352	99.624	0					61	24	4	0	0	0	0.048995	1	36221	36221		78.06	15.488	1	14060000			54350	9124	39553	39868	53032	53032					0.10368657313983931
TLFTKELVL	9	Unmodified	_TLFTKELVL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;ENST00000470723.5_1_7:127589266-127648128:+|nuORF;ENST00000467238.1_1_7:127631037-127637644:+|nuORF	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-SECPEP	A375_MHC_IP_R2	2	532.723388671875	2	532.323525	1062.6325	-0.78287	-0.00041674	0.081798	4.3543E-05	-0.70107	-0.0003732	532.3234483249703	97.753	1.6279	98.509	98.025	99.653	0.75586					68	31	3	0	0	0	0.1952	1	37029	37029		53.317	0	1	15966000			54351	9124	39553	39868	53033	53033					0.10368657313983931
TLFVCLCLGLY	11	2 Carbamidomethyl (C)	_TLFVC(Carbamidomethyl (C))LC(Carbamidomethyl (C))LGLY_	TLFVC(1)LC(1)LGLY		TLFVC(42)LC(42)LGLY		0	2	0		MER4-int_dup2801|chr22:11928496-11929057:+|1.3088795502841724|0.3924253001856876|1.74|451.0|24|3|sense	MER4-int_dup2801|chr22:11928496-11929057:+|1.3088795502841724|0.3924253001856876|1.74|451.0|24|3|sense	MER4-int_dup2801|chr22:11928496-11929057:+|1.3088795502841724|0.3924253001856876|1.74|451.0|24|3|sense	MULTI-MSMS	A375_MHC_IP_R2	2	680.244873046875	2	679.845984	1357.67742	-0.75328	-0.00051211	-0.60628	-0.00041218	-1.3596	-0.00092429	679.845525844589	55.208	1.0674	55.959	55.626	56.694	0.75075					61	20	5	0	0	0	0.36362	1	21018	21018		41.84	15.571	1	146910000			54352	14375	39554	39869	53034	53034	64;65				0.012883967933703389
TLFVPFRQKTD	11	Unmodified	_TLFVPFRQKTD_					0	0	0		nc|ENSG00000110218|Q96RD7-2|PANX1;ENSG00000110218|ENST00000227638|PANX1	nc|ENSG00000110218|Q96RD7-2|PANX1	nc|ENSG00000110218|Q96RD7-2|PANX1	MULTI-SECPEP	A375_MHC_IP_R2	2	450.69964599609375	3	451.250472	1350.72959	-0.22227	-0.0001003	-0.25423	-0.00011472	-0.4765	-0.00021502	451.2503515915737	42.112	0.30575	42.884	42.656	42.962	0.7724					9	5	2	0	0	0	0.99945	1	15580	15580		1.0136	0	1	3167200			54353	2925	39555	39870	53035	53035					0.0682501952298935
TLFYVKFR	8	Unmodified	_TLFYVKFR_					0	0	0		ENSG00000136152|ENST00000349995|COG3;nc|ENSG00000136152|Q96JB2-2|COG3	ENSG00000136152|ENST00000349995|COG3	ENSG00000136152|ENST00000349995|COG3	MULTI-SECPEP	A375_MHC_IP_R2	2	358.2855529785156	3	358.542927	1072.60695	-0.021979	-7.8804E-06	-0.7622	-0.00027328	-0.78418	-0.00028116	358.8776442732158	47.235	0.25592	47.996	47.867	48.123	0.76128					7	4	2	0	0	0	0.95423	1	17674	17674		13.906	4.5229	1	2296400			54354	4758	39556	39871	53036	53036					0.07355227582229418
TLGAFRVKSK	10	Unmodified	_TLGAFRVKSK_					0	0	0			REV__nc|ENSG00000127603|O94854-4|MACF1	REV__nc|ENSG00000127603|O94854-4|MACF1	MULTI-MSMS	A375_MHC_IP_R1	1	369.96112060546875	3	369.560869	1105.66078	0.62802	0.00023209	0.1677	6.1975E-05	0.79572	0.00029407	369.56092108041685	49.565	0.45745	49.565	49.336	49.793	0					13	8	2	0	0	0	0.70741	1	17568	17568		8.9762	1.3673	1	1626500	+		54355	27213	39557	39872	53037	53037					0.11217400013947554
TLGAKKKEKVK	11	Unmodified	_TLGAKKKEKVK_					0	0	0		ENSG00000116991|ENST00000674635|SIPA1L2	ENSG00000116991|ENST00000674635|SIPA1L2	ENSG00000116991|ENST00000674635|SIPA1L2	MULTI-MSMS	A375_MHC_IP_R1	1	410.60693359375	3	410.602845	1228.78671	-0.1485	-6.0973E-05	0.01696	6.964E-06	-0.13154	-5.4009E-05	410.60284217268224	24.322	0.35507	24.322	24.143	24.498	0					9	6	2	0	0	0	0.73732	1	6852	6852		1.9275	0	1	3332600			54356	3449	39558	39873	53038	53038					0.18146486799355444
TLGDLLKEV	9	Unmodified	_TLGDLLKEV_					0	0	0		ENST00000476518.1_1_6:106649790-106727677:-|nuORF;nc|ENSG00000057663|Q9H1Y0-2|ATG5;ENSG00000057663|ENST00000369076|ATG5	ENST00000476518.1_1_6:106649790-106727677:-|nuORF	ENST00000476518.1_1_6:106649790-106727677:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	494.6894226074219	2	494.289682	986.564812	-0.28879	-0.00014274	-0.36013	-0.00017801	-0.64892	-0.00032075	494.28937951770814	104.96	0.70872	104.96	104.49	105.2	0					19	13	2	0	0	0	0.12591	1	38538	38538		46.022	13.985	1	1413400			54357	1287	39559	39874	53039	53039					0.07099207383203066
TLGDLLKEV	9	Unmodified	_TLGDLLKEV_					0	0	0		ENST00000476518.1_1_6:106649790-106727677:-|nuORF;nc|ENSG00000057663|Q9H1Y0-2|ATG5;ENSG00000057663|ENST00000369076|ATG5	ENST00000476518.1_1_6:106649790-106727677:-|nuORF	ENST00000476518.1_1_6:106649790-106727677:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	494.289682	986.564812	-0.44353	-0.00021923	-0.7457	-0.00036859	-1.1892	-0.00058782	494.28899467237994	104.01	0.5577	104.78	104.5	105.05	0.76308	-0.089757	-0.00020231	NaN	46.022	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1518100			54358	1287	39559	39874							0.07099207383203066
TLGFSHKR	8	Unmodified	_TLGFSHKR_					0	0	0			REV__ENSG00000178502|ENST00000319121|KLHL11	REV__ENSG00000178502|ENST00000319121|KLHL11	MULTI-SECPEP	A375_MHC_IP_R2	2	473.6664733886719	2	473.266876	944.519199	-0.65724	-0.00031105	0.38351	0.0001815	-0.27373	-0.00012955	473.26692883218317	27.071	0.61388	27.75	27.331	27.945	0.67857					18	11	2	0	0	0	0.90775	1	9210	9210		26.884	14.352	1	6634000	+		54359	21507	39560	39875	53040	53040					0.04472026711471244
TLGFSHKR	8	Unmodified	_TLGFSHKR_					0	0	0			REV__ENSG00000178502|ENST00000319121|KLHL11	REV__ENSG00000178502|ENST00000319121|KLHL11	MULTI-MATCH	A375_MHC_IP_R1	1		2	473.266876	944.519199	-0.60792	-0.00028771	0.33916	0.00016051	-0.26877	-0.0001272	473.2668422430555	27.783	0.55583	27.783	27.381	27.937	0	0.016448	-2.5497E-05	NaN	26.884	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7247500	+		54360	21507	39560	39875							0.04472026711471244
TLGGVTLTLL	10	Unmodified	_TLGGVTLTLL_					0	0	0		nc|ENSG00000110046|Q2TAZ0-3|ATG2A;ENSG00000110046|ENST00000377264|ATG2A;ATG2A|p.T632Sfs*23|1|0.53|ENSG00000110046|chr11:64909892-64909893|CG/-|frameshift_variant	nc|ENSG00000110046|Q2TAZ0-3|ATG2A	nc|ENSG00000110046|Q2TAZ0-3|ATG2A	MULTI-MSMS	A375_MHC_IP_R1	1	494.7075500488281	2	494.307875	986.601197	-0.26606	-0.00013152	0.12069	5.9657E-05	-0.14538	-7.1861E-05	494.3078135042306	91.895	2.1319	91.895	91.503	93.635	0					70	41	3	0	0	0	0.079406	1	33727	33727		68.081	2.607	1	4018800			54361	2910	39561	39876	53041	53041					0.10736084279915303
TLGHEVGYSI	10	Unmodified	_TLGHEVGYSI_					0	0	0		nc|ENSG00000144045|Q8TE96-3|DQX1;ENST00000473508.1_1_2:74750418-74753390:-|nuORF;nc|ENSG00000144045|Q8TE96-2|DQX1;ENSG00000144045|ENST00000404568|DQX1	nc|ENSG00000144045|Q8TE96-3|DQX1	nc|ENSG00000144045|Q8TE96-3|DQX1	MULTI-MSMS	A375_MHC_IP_R1	1	538.71044921875	2	538.274564	1074.53457	-0.70131	-0.0003775	-2.086	-0.0011229	-2.7873	-0.0015004	538.2740287222553	76.065	1.2603	76.065	75.312	76.572	0					36	24	2	0	0	0	0.62155	1	27633	27633		19.257	2.1441	1	1927600			54362	5459	39562	39877	53042	53042					0.0002884871801143163
TLGISLTL	8	Unmodified	_TLGISLTL_					0	0	0			REV__ENST00000347464.9_1_2:234203241-234203505:+|nuORF	REV__ENST00000347464.9_1_2:234203241-234203505:+|nuORF	MSMS	A375_MHC_IP_R1	1	409.1630859375	2	409.255111	816.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.627	1	60.627	60.127	61.127	0								0	0	0	0.16876	1	21831	21831		24.674	5.2349	1		+		54363	23780	39563	39878	53043	53043					0.08008168154276518
TLGISLTL	8	Unmodified	_TLGISLTL_					0	0	0			REV__ENST00000347464.9_1_2:234203241-234203505:+|nuORF	REV__ENST00000347464.9_1_2:234203241-234203505:+|nuORF	MSMS	A375_MHC_IP_R2	2	409.1631164550781	2	409.255111	816.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.535	1	60.282	59.782	60.782	0.74714								0	0	0	0.16876	1	22530	22530		18.135	3.5533	1		+		54364	23780	39563	39878	53044	53044					0.08008168154276518
TLGLIRKL	8	Unmodified	_TLGLIRKL_					0	0	0		ENSG00000107371|ENST00000327304|EXOSC3	ENSG00000107371|ENST00000327304|EXOSC3	ENSG00000107371|ENST00000327304|EXOSC3	MULTI-SECPEP	A375_MHC_IP_R1	1	457.65277099609375	2	457.313295	912.612037	-0.28177	-0.00012886	0.28722	0.00013135	0.0054525	2.4935E-06	457.3133018799706	53.432	0.55732	53.432	53.048	53.605	0					14	10	2	0	0	0	0.92636	1	19076	19076		16.942	4.4107	1	1009600			54365	2737	39564	39879	53045	53045					0.1522353144483759
TLGLPIVRQ	9	Unmodified	_TLGLPIVRQ_					0	0	0			REV__ENST00000435962.6_1_14:92280167-92333840:-|nuORF	REV__ENST00000435962.6_1_14:92280167-92333840:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	498.09625244140625	2	498.813659	995.612765	-0.39112	-0.00019509	-0.26112	-0.00013025	-0.65223	-0.00032534	498.8131769409607	36.131	0.25379	36.131	35.982	36.236	0					6	4	2	0	0	0	0.76187	1	12089	12089		11.64	4.3511	1	354750	+		54366	24757	39565	39880	53046	53046					0.11478326093902069
TLGLRFLRS	9	Unmodified	_TLGLRFLRS_					0	0	0		ENST00000508913.5_1_5:43043449-43044931:+|nuORF	ENST00000508913.5_1_5:43043449-43044931:+|nuORF	ENST00000508913.5_1_5:43043449-43044931:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	354.9222106933594	3	354.885464	1061.63456	-0.10075	-3.5755E-05	-0.31432	-0.00011155	-0.41507	-0.0001473	354.88530411351496	46.367	0.7112	47.133	46.855	47.567	0.76519					28	13	3	0	0	0	0.72761	1	17281	17281		4.5289	0	1	6738400			54367	12886	39566	39881	53047	53047					0.10621130842446291
TLGLRQSAKE	10	Unmodified	_TLGLRQSAKE_					0	0	0			REV__ENST00000408991.3_1_19:49621717-49621960:-|nuORF	REV__ENST00000408991.3_1_19:49621717-49621960:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	368.29278564453125	3	368.212017	1101.61422	-0.043566	-1.6041E-05	-2.4798	-0.00091309	-2.5234	-0.00092913	368.21134946271496	23.933	0.35767	24.563	24.384	24.742	0.63014					9	6	2	0	0	0	0.92445	1	7797	7797		10.315	0	1	4819900	+		54368	24458	39567	39882	53048	53048					0.06747915391997594
TLGNVLVTV	9	Unmodified	_TLGNVLVTV_					0	0	0		nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000511971.5_1_4:56749994-56766742:+|nuORF	nc|ENSG00000090989|Q9NV70-2|EXOC1;REV__nc|ENSG00000170927|P08F94-2|PKHD1	REV__nc|ENSG00000170927|P08F94-2|PKHD1	MULTI-SECPEP	A375_MHC_IP_R2	2	457.6636657714844	2	458.279118	914.543683	-0.31845	-0.00014594	-0.16169	-7.4101E-05	-0.48014	-0.00022004	458.278981884377	102.93	1.0178	103.69	103.48	104.5	0.76428					32	19	2	0	0	0	0.28216	1	39081	39081		34.402	0	1	4245700			54369	21034;1966	39568	39883	53049	53049					0.08299242074349422
TLGPDHPAV	9	Unmodified	_TLGPDHPAV_					0	0	0		nc|ENSG00000137171|Q9NSK0-4|KLC4;nc|ENSG00000137171|Q9NSK0-5|KLC4;ENSG00000137171|ENST00000347162|KLC4;nc|ENSG00000137171|Q9NSK0-3|KLC4;ENST00000467906.5_1_6:43030654-43039600:+|nuORF	nc|ENSG00000137171|Q9NSK0-4|KLC4	nc|ENSG00000137171|Q9NSK0-4|KLC4	MULTI-MSMS	A375_MHC_IP_R2	2	453.6501159667969	2	453.737617	905.460681	-0.68688	-0.00031166	-0.16766	-7.6073E-05	-0.85453	-0.00038773	453.73751047293587	33.51	0.40521	34.262	34.095	34.5	0.75225					12	7	2	0	0	0	0.1478	1	12038	12038		42.095	7.9921	1	2311800			54370	4865	39569	39884	53050	53050					0.004169253463260247
TLGPHDPSFL	10	Unmodified	_TLGPHDPSFL_					0	0	0			REV__nc|ENSG00000177463|P49116-2|NR2C2	REV__nc|ENSG00000177463|P49116-2|NR2C2	MULTI-SECPEP	A375_MHC_IP_R1	1	541.6976318359375	2	542.277106	1082.53966	-0.54137	-0.00029357	-0.91742	-0.00049749	-1.4588	-0.00079107	542.2765607392962	77.869	0.66473	77.869	77.537	78.201	0					21	12	2	0	0	0	0.90853	1	28290	28290		6.7232	6.7232	1	4171300	+		54371	21458	39570	39885	53051	53051					0.0016915258061089844
TLGPNKYLDP	10	Unmodified	_TLGPNKYLDP_					0	0	0			REV__ENSG00000283439|ENST00000636696|SPEM3	REV__ENSG00000283439|ENST00000636696|SPEM3	MULTI-MSMS	A375_MHC_IP_R1	1	373.601318359375	3	373.201118	1116.58152	0.31099	0.00011606	0.91003	0.00033962	1.221	0.00045568	373.2015669947089	34.745	1.268	34.745	33.95	35.218	0					35	24	3	0	0	0	0.30287	1	11462	11462		28.234	4.4326	1	7523900	+		54372	22996	39571	39886	53052	53052					0.027897082691197284
TLGPQLMEV	9	Unmodified	_TLGPQLMEV_					0	0	0		ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB	ENSG00000136235|ENST00000258733|GPNMB	ENSG00000136235|ENST00000258733|GPNMB	MULTI-SECPEP	A375_MHC_IP_R1	1	494.1423645019531	2	494.26261	986.510668	-0.31214	-0.00015428	-0.013581	-6.7124E-06	-0.32572	-0.00016099	494.26258494512655	102.59	0.81059	102.59	102.25	103.06	0					25	15	2	0	0	0	0.034037	1	37734	37734		88.954	10.804	1	1811300			54373	4767	39572	39887	53053	53053					0.01687291959990489
TLGPQLMEV	9	Unmodified	_TLGPQLMEV_					0	0	0		ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB	ENSG00000136235|ENST00000258733|GPNMB	ENSG00000136235|ENST00000258733|GPNMB	MULTI-MSMS	A375_MHC_IP_R2	2	494.6630554199219	2	494.26261	986.510668	-0.42909	-0.00021208	0.12883	6.3676E-05	-0.30026	-0.00014841	494.2626821765865	101.77	0.81328	102.53	102.21	103.02	0.76428					30	15	3	0	0	0	0.054426	1	38532	38532		62.573	3.8939	1	3271200			54374	4767	39572	39887	53054	53054					0.01687291959990489
TLGPQLMEV	9	Oxidation (M)	_TLGPQLM(Oxidation (M))EV_		TLGPQLM(1)EV		TLGPQLM(130)EV	0	0	1		ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB	ENSG00000136235|ENST00000258733|GPNMB	ENSG00000136235|ENST00000258733|GPNMB	MULTI-SECPEP	A375_MHC_IP_R1	1	502.6597900390625	2	502.260068	1002.50558	-0.37681	-0.00018926	0.020752	1.0423E-05	-0.35606	-0.00017883	502.2601102154249	74.423	0.70963	74.423	74.095	74.805	0					36	13	4	0	0	0	0.011357	1	27076	27076		125.53	43.639	1	5018300			54375	4767	39572	39888	53055	53055		251			0.004429880973702893
TLGPQLMEV	9	Oxidation (M)	_TLGPQLM(Oxidation (M))EV_		TLGPQLM(1)EV		TLGPQLM(100)EV	0	0	1		ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB	ENSG00000136235|ENST00000258733|GPNMB	ENSG00000136235|ENST00000258733|GPNMB	MULTI-MSMS	A375_MHC_IP_R2	2	502.65997314453125	2	502.260068	1002.50558	-0.59556	-0.00029912	0.26024	0.00013071	-0.33532	-0.00016842	502.2601256791666	73.738	0.81377	74.473	74.091	74.905	0.73541					35	15	3	0	0	0	0.0092511	1	27939	27939		103.42	21.529	1	5927500			54376	4767	39572	39888	53056	53056		251			0.004429880973702893
TLGPVGGTF	9	Unmodified	_TLGPVGGTF_					0	0	0			REV__DLEC1|p.P830L|1|0.46|ENSG00000008226|chr3:38097561-38097561|C/T|missense_variant	REV__DLEC1|p.P830L|1|0.46|ENSG00000008226|chr3:38097561-38097561|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	424.6370544433594	2	424.729261	847.443968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.38	1	65.38	64.88	65.88	0								0	0	0	0.15486	1	23669	23669		11.64	0.81637	1		+		54377	15997	39573	39889	53057	53057					0.014144244604040068
TLGPVPEI	8	Unmodified	_TLGPVPEI_					0	0	0		ENSG00000117395|ENST00000236051|EBNA1BP2;ENST00000472982.5_1_1:43637061-43637789:-|nuORF	ENSG00000117395|ENST00000236051|EBNA1BP2	ENSG00000117395|ENST00000236051|EBNA1BP2	MULTI-MSMS	A375_MHC_IP_R1	1	826.817626953125	1	825.471646	824.46437	-0.50948	-0.00042056	0.14588	0.00012042	-0.3636	-0.00030014	825.4717014783965	94.973	1.1163	94.973	94.599	95.716	0					42	21	3	0	0	0	0.23604	2	34963	34963;35111		64.236	23.788	1	18510000			54378	3479	39574	39890	53058;53059	53058					0.04511595120197853
TLGPVPEI	8	Unmodified	_TLGPVPEI_					0	0	0		ENSG00000117395|ENST00000236051|EBNA1BP2;ENST00000472982.5_1_1:43637061-43637789:-|nuORF	ENSG00000117395|ENST00000236051|EBNA1BP2	ENSG00000117395|ENST00000236051|EBNA1BP2	MULTI-MATCH	A375_MHC_IP_R2	2		1	825.471646	824.46437	-0.6004	-0.00049561	0.54213	0.00044751	-0.058272	-4.8102E-05	825.471989351488	94.149	1.1629	94.894	94.566	95.729	0.74474	-0.039814	0.00016912	NaN	64.236	49	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20362000			54379	3479	39574	39890							0.04511595120197853
TLGQDLAAY	9	Unmodified	_TLGQDLAAY_					0	0	0		nc|ENSG00000148584|Q9NQ94-5|A1CF;nc|ENSG00000148584|Q9NQ94-6|A1CF;nc|ENSG00000148584|Q9NQ94-3|A1CF;ENSG00000148584|ENST00000373997|A1CF;nc|ENSG00000148584|Q9NQ94|A1CF;nc|ENSG00000148584|Q9NQ94-4|A1CF	nc|ENSG00000148584|Q9NQ94-5|A1CF	nc|ENSG00000148584|Q9NQ94-5|A1CF	MULTI-MSMS	A375_MHC_IP_R2	2	476.6839599609375	2	476.242732	950.470912	-0.58174	-0.00027705	-0.139	-6.6197E-05	-0.72074	-0.00034325	476.2426325314042	72.939	0.86588	73.674	73.124	73.99	0.73541					26	16	2	0	0	0	0.6656	1	27517	27517		10.074	0.6908	1	1553100			54380	5752	39575	39891	53060	53060					-0.006305117191004683
TLGQHNPVF	9	Unmodified	_TLGQHNPVF_					0	0	0			REV__TRPV5|p.L234F|1|0.3|ENSG00000127412|chr7:142928753-142928753|G/A|missense_variant	REV__TRPV5|p.L234F|1|0.3|ENSG00000127412|chr7:142928753-142928753|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	506.6769104003906	2	506.764166	1011.51378	-0.3616	-0.00018325	0.14599	7.3981E-05	-0.21561	-0.00010926	506.7640723779989	59.88	0.35667	59.88	59.803	60.159	0					8	6	2	0	0	0	0.76187	1	21602	21602		7.2892	7.2892	1	475100	+		54381	28917	39576	39892	53061	53061					0.008483031289983956
TLGQIWDV	8	Unmodified	_TLGQIWDV_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R1	1	931.8890380859375	1	931.488359	930.481082	0.32652	0.00030415	-0.20803	-0.00019378	0.11849	0.00011037	931.4882274166056	115.71	0.71201	115.71	115.43	116.14	0					21	13	2	0	0	0	0.03527	1	42438	42438		106.94	54.672	1	6984300			54382	9114	39577	39893	53062	53062					0.013060960061466176
TLGQIWDV	8	Unmodified	_TLGQIWDV_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MATCH	A375_MHC_IP_R2	2		1	931.488359	930.481082	-0.07125	-6.6369E-05	-0.037873	-3.5279E-05	-0.10912	-0.00010165	931.4879672929375	114.81	0.71582	115.5	115.22	115.93	0.68999	-0.10435	0.00011004	NaN	106.94	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7137900			54383	9114	39577	39893							0.013060960061466176
TLGQKPVI	8	Unmodified	_TLGQKPVI_					0	0	0		nc|ENSG00000179397|Q5SY80-2|CATSPERE;ENSG00000179397|ENST00000366534|CATSPERE;nc|ENSG00000179397|Q5SY80-3|CATSPERE	nc|ENSG00000179397|Q5SY80-2|CATSPERE	nc|ENSG00000179397|Q5SY80-2|CATSPERE	MULTI-MSMS	A375_MHC_IP_R2	2	428.6685791015625	2	428.268553	854.522553	-0.0099338	-4.2543E-06	-0.18882	-8.0868E-05	-0.19876	-8.5122E-05	428.2684399541004	47.183	0.35715	47.945	47.766	48.123	0.76128					10	6	2	0	0	0	0.45507	1	17722	17722		50.855	4.8341	1	1487600			54384	8227	39578	39894	53063	53063					0.08947276765479728
TLGQRLEPL	9	Unmodified	_TLGQRLEPL_					0	0	0		ENST00000505048.1_1_5:108924340-108924472:+|nuORF	ENST00000505048.1_1_5:108924340-108924472:+|nuORF	ENST00000505048.1_1_5:108924340-108924472:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	513.6851196289062	2	513.800749	1025.58694	-0.25886	-0.000133	-0.3892	-0.00019997	-0.64806	-0.00033298	513.8004278155264	70.16	1.7845	70.16	69.529	71.313	0					48	34	2	0	0	0	0.20567	1	25356	25356		46.021	0	1	31415000			54385	12836	39579	39895	53064	53064					0.07517431851601941
TLGRSALF	8	Unmodified	_TLGRSALF_					0	0	0			REV__ZMYND15|p.E391K|1|0.73|ENSG00000141497|chr17:4743329-4743329|G/A|missense_variant	REV__ZMYND15|p.E391K|1|0.73|ENSG00000141497|chr17:4743329-4743329|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	433.15045166015625	2	432.750527	863.486502	0.3614	0.0001564	-0.29818	-0.00012904	0.063221	2.7359E-05	432.7503619218049	69.456	0.964	69.456	69.07	70.034	0					44	18	4	0	0	0	0.73227	1	25166	25166		46.021	3.9264	1	13867000	+		54386	19271	39580	39896	53065	53065					0.04929819588619466
TLGRSALF	8	Unmodified	_TLGRSALF_					0	0	0			REV__ZMYND15|p.E391K|1|0.73|ENSG00000141497|chr17:4743329-4743329|G/A|missense_variant	REV__ZMYND15|p.E391K|1|0.73|ENSG00000141497|chr17:4743329-4743329|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	433.150390625	2	432.750527	863.486502	-0.13235	-5.7274E-05	0.10114	4.377E-05	-0.031206	-1.3504E-05	432.7504945863334	68.354	0.86089	69.089	68.765	69.626	0.73511					39	16	3	0	0	0	0.36021	1	25851	25851		54.774	3.9185	1	11617000	+		54387	19271	39580	39896	53066	53066					0.04929819588619466
TLGRSALF	8	Unmodified	_TLGRSALF_					0	0	0			REV__ZMYND15|p.E391K|1|0.73|ENSG00000141497|chr17:4743329-4743329|G/A|missense_variant	REV__ZMYND15|p.E391K|1|0.73|ENSG00000141497|chr17:4743329-4743329|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	433.3411865234375	2	432.750527	863.486502	-0.13235	-5.7274E-05	0.10114	4.377E-05	-0.031206	-1.3504E-05	432.7504945863334	68.354	0.86089	69.089	68.765	69.626	0.73511					39	16	3	0	0	0	0.94587	1	26054	26054		14.838	0	1	11617000	+		54388	19271	39580	39896	53067	53067					0.04929819588619466
TLGSMQPTSW	10	Unmodified	_TLGSMQPTSW_					0	0	0		ENST00000540840.1_1_4:110925762-110933368:+|nuORF	ENST00000540840.1_1_4:110925762-110933368:+|nuORF	ENST00000540840.1_1_4:110925762-110933368:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	554.6681518554688	2	554.260599	1106.50665	-0.55059	-0.00030517	-0.84282	-0.00046714	-1.3934	-0.00077231	554.762031581362	74.933	0.86049	74.933	74.653	75.514	0					20	16	2	0	0	0	0.8528	1	27268	27268		16.149	0.30192	1	1175200			54389	13277	39581	39897	53068	53068					-0.04234797533717938
TLGSRRNLL	9	Unmodified	_TLGSRRNLL_					0	0	0			REV__nc|ENSG00000164347|Q969S9-4|GFM2	REV__nc|ENSG00000164347|Q969S9-4|GFM2	MULTI-SECPEP	A375_MHC_IP_R2	2	514.6637573242188	2	515.311815	1028.60908	-0.67501	-0.00034784	1.2206	0.00062897	0.54554	0.00028112	515.3131194661416	91.717	0.5067	92.452	92.273	92.78	0.7345					17	9	2	0	0	0	0.39388	1	34916	34916		32.305	0	1	2644700	+		54390	20488	39582	39898	53069	53069					0.09591656320048969
TLGVGTEGTV	10	Unmodified	_TLGVGTEGTV_					0	0	0		ENST00000494730.2_1_22:25436553-25570783:+|nuORF	ENST00000494730.2_1_22:25436553-25570783:+|nuORF	ENST00000494730.2_1_22:25436553-25570783:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	467.6473388671875	2	467.248015	932.481476	-0.42279	-0.00019755	-0.52589	-0.00024572	-0.94868	-0.00044327	467.2476398953877	113.69	0.90824	114.4	113.97	114.88	0.70985					24	17	2	0	0	0	0.70651	1	42824	42824		9.3831	0	1	2897900			54391	12694	39583	39899	53070	53070					0.012534709353417384
TLGVILCKV	9	Unmodified	_TLGVILCKV_					0	0	0		ENSG00000171659|ENST00000378142|GPR34	ENSG00000171659|ENST00000378142|GPR34	ENSG00000171659|ENST00000378142|GPR34	MSMS	A375_MHC_IP_R1	1	473.21417236328125	2	473.293714	944.572874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.729	1	97.729	97.229	98.229	0								0	0	0	0.15283	1	35904	35904		16.942	4.4107	1				54392	7626	39584	39900	53071	53071					0.09837063098973431
TLGVLKPSFE	10	Unmodified	_TLGVLKPSFE_					0	0	0			REV__ENSG00000133028|ENST00000255390|SCO1	REV__ENSG00000133028|ENST00000255390|SCO1	MSMS	A375_MHC_IP_R2	2	364.14691162109375	3	364.209613	1089.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.66	1	29.358	28.858	29.858	0.69872								0	0	0	0.14953	1	9927	9927		18.721	2.5721	1		+		54393	18700	39585	39901	53072	53072					0.0657918279155183
TLGVQDCYYHY	11	Unmodified	_TLGVQDCYYHY_					0	0	0		LPA|p.P1049L|1|0.48|ENSG00000198670|chr6:160599641-160599641|G/A|missense_variant	LPA|p.P1049L|1|0.48|ENSG00000198670|chr6:160599641-160599641|G/A|missense_variant	LPA|p.P1049L|1|0.48|ENSG00000198670|chr6:160599641-160599641|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	681.1934204101562	2	681.29517	1360.57579	-0.5863	-0.00039944	-2.8696	-0.001955	-3.4559	-0.0023545	681.7901729745896	102.94	0.20358	102.94	102.81	103.01	0					8	3	3	0	0	0	0.99507	1	37842	37842		2.2828	0.80087	1	797260			54394	14312	39586	39902	53073	53073					-0.09007758304824165
TLGYTQAF	8	Unmodified	_TLGYTQAF_					0	0	0			REV__nc|ENSG00000130985|P22314-2|UBA1	REV__nc|ENSG00000130985|P22314-2|UBA1	MSMS	A375_MHC_IP_R2	2	450.68145751953125	2	450.726718	899.438883	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.244	1	53.995	53.495	54.495	0.75105								0	0	0	0.16876	1	20088	20088		19.439	0	1		+		54395	18577	39587	39903	53074	53074					-0.01485879402230239
TLHASKTFPL	10	Unmodified	_TLHASKTFPL_					0	0	0			REV__ENSG00000083896|ENST00000344157|YTHDC1	REV__ENSG00000083896|ENST00000344157|YTHDC1	MULTI-SECPEP	A375_MHC_IP_R1	1	558.2166137695312	2	557.816399	1113.61824	-0.28633	-0.00015972	-0.20661	-0.00011525	-0.49294	-0.00027497	557.8162613630401	107.49	0.71416	107.49	107.14	107.85	0					30	13	3	0	0	0	0.72086	1	39436	39436		24.021	3.5669	1	4445200	+		54396	16816	39588	39904	53075	53075					0.06598004885699993
TLHCMPPYL	9	Unmodified	_TLHCMPPYL_					0	0	0			REV__CCNDBP1|p.I295L|1|0.26|ENSG00000166946|chr15:43192765-43192765|A/T|missense_variant	REV__CCNDBP1|p.I295L|1|0.26|ENSG00000166946|chr15:43192765-43192765|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	538.18212890625	2	537.759181	1073.50381	-0.6875	-0.00036971	-1.7467	-0.00093928	-2.4342	-0.001309	537.7584604517691	75.589	0.65359	75.589	75.11	75.764	0					15	12	2	0	0	0	0.69504	1	27580	27580		18.135	0	1	933120	+		54397	15605	39589	39905	53076	53076					-0.03000344192241755
TLHDKFQDWS	10	Unmodified	_TLHDKFQDWS_					0	0	0			REV__ENST00000511736.5_1_5:43139401-43191858:+|nuORF	REV__ENST00000511736.5_1_5:43139401-43191858:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	425.97161865234375	3	426.20341	1275.5884	-0.01431	-6.0989E-06	-0.0085438	-3.6414E-06	-0.022854	-9.7402E-06	426.53774722653185	28.592	0.25398	28.592	28.44	28.694	0					7	4	2	0	0	0	0.94755	1	8882	8882		3.0723	0.44103	1	1723700	+		54398	25617	39590	39906	53077	53077					-0.03836978850290507
TLHHLAATNDS	11	Unmodified	_TLHHLAATNDS_					0	0	0			REV__ENSG00000213339|ENST00000250237|QTRT1	REV__ENSG00000213339|ENST00000250237|QTRT1	MULTI-SECPEP	A375_MHC_IP_R2	2	393.9794006347656	3	393.863276	1178.568	-0.3855	-0.00015183	-0.040949	-1.6128E-05	-0.42645	-0.00016796	393.86324066668215	40.913	0.66214	41.687	41.335	41.997	0.77451					14	10	2	0	0	0	0.9907	1	15235	15235		9.2438	2.6134	1	2270000	+		54399	22619	39591	39907	53078	53078					-0.014141495101057444
TLHIKLLLLLF	11	Unmodified	_TLHIKLLLLLF_					0	0	0		ENST00000483888.6_1_6:75838029-75838092:-|nuORF	ENST00000483888.6_1_6:75838029-75838092:-|nuORF	ENST00000483888.6_1_6:75838029-75838092:-|nuORF	MSMS	A375_MHC_IP_R2	2	662.4177856445312	2	662.441766	1322.86898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.216	1	93.955	93.455	94.455	0.73902								0	0	0	0.16297	1	35440	35440		3.2813	0.28607	1				54400	12550	39592	39908	53079	53079					0.22046008878305656
TLHLLVHLSS	10	Unmodified	_TLHLLVHLSS_					0	0	0			REV__ENST00000513199.5_1_4:99943548-99960531:+|nuORF	REV__ENST00000513199.5_1_4:99943548-99960531:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	560.1412963867188	2	560.329673	1118.64479	-0.45515	-0.00025503	0.22936	0.00012852	-0.22578	-0.00012651	560.3297371752755	142.86	0.45459	142.89	142.69	143.14	0.030731					13	8	2	0	0	0	0.9269	1	55849	55849		3.5965	0.31518	1	546490	+		54401	25637	39593	39909	53080	53080					0.09021693777026485
TLHLNKGT	8	Unmodified	_TLHLNKGT_					0	0	0		nc|ENSG00000173744|P52594-2|AGFG1;nc|ENSG00000173744|P52594-3|AGFG1;ENSG00000173744|ENST00000310078|AGFG1;nc|ENSG00000173744|P52594-4|AGFG1	nc|ENSG00000173744|P52594-2|AGFG1	nc|ENSG00000173744|P52594-2|AGFG1	MULTI-SECPEP	A375_MHC_IP_R1	1	442.9509582519531	2	442.253434	882.492316	-0.46119	-0.00020396	0.042887	1.8967E-05	-0.4183	-0.000185	442.25342136303277	41.44	1.1187	41.44	40.963	42.082	0					55	21	4	0	0	0	0.96873	1	14503	14503		12.241	0	1	63481000			54402	7826	39594	39910	53081	53081					0.046369181002773985
TLHPNKRPAY	10	Unmodified	_TLHPNKRPAY_					0	0	0		ENSG00000198108|ENST00000305031|CHSY3;CHSY3|p.T772Dfs*18|1|0.4|ENSG00000198108|chr5:130185448-130185449|-/A|frameshift_variant	ENSG00000198108|ENST00000305031|CHSY3	ENSG00000198108|ENST00000305031|CHSY3	MULTI-SECPEP	A375_MHC_IP_R2	2	400.2561950683594	3	399.556007	1195.64619	-0.41694	-0.00016659	-0.17677	-7.0628E-05	-0.59371	-0.00023722	399.55586408452353	33.255	1.3197	34.007	33.534	34.853	0.75225					40	25	2	0	0	0	0.91556	1	12123	12123		8.9762	0	1	1865100			54403	9230	39595	39911	53082	53082					0.05619327865815649
TLHSIIISL	9	Unmodified	_TLHSIIISL_					0	0	0		ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	MULTI-SECPEP	A375_MHC_IP_R2	2	499.1200256347656	2	498.808042	995.601532	-0.40999	-0.0002045	0.0091377	4.5579E-06	-0.40085	-0.00019995	498.8079781533653	98.973	0.65971	99.733	99.301	99.961	0.75977					16	12	2	0	0	0	0.3213	1	37483	37483		37.974	5.6685	1	979490			54404	7370	39596	39912	53083	53083					0.1035550399976728
TLHSIIISL	9	Unmodified	_TLHSIIISL_					0	0	0		ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	MULTI-MATCH	A375_MHC_IP_R1	1		2	498.808042	995.601532	-0.37942	-0.00018926	0.0049189	2.4536E-06	-0.37451	-0.00018681	498.8080714753641	99.922	0.60562	99.922	99.673	100.28	0	0.094313	-2.6631E-06	NaN	46.021	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1083600			54405	7370	39596	39912							0.1035550399976728
TLHSLNLFPK	10	Unmodified	_TLHSLNLFPK_					0	0	0			REV__MLT1F1-int_dup148|chr15:38325957-38327301:+|1.4650218780754924|0.4106847790855086|1.83|471.0|82|2|anti-sense	REV__MLT1F1-int_dup148|chr15:38325957-38327301:+|1.4650218780754924|0.4106847790855086|1.83|471.0|82|2|anti-sense	MULTI-MSMS	A375_MHC_IP_R1	1	390.59051513671875	3	390.560758	1168.66044	0.012473	4.8715E-06	-2.9503	-0.0011523	-2.9378	-0.0011474	390.55945804241463	19.349	0.43628	19.349	19.238	19.674	0					10	8	2	0	0	0	0.71455	1	4743	4743		5.7834	0.88642	1	2179400	+		54406	27020	39597	39913	53084	53084					0.08285980294067485
TLHSPRSSL	9	Unmodified	_TLHSPRSSL_					0	0	0			REV__ENST00000471209.1_1_1:155580024-155580464:+|nuORF	REV__ENST00000471209.1_1_1:155580024-155580464:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	499.9830017089844	2	499.274898	996.535243	-0.62901	-0.00031405	0.38667	0.00019306	-0.24233	-0.00012099	499.2750672998404	32.61	0.30082	32.61	32.434	32.734	0					9	5	2	0	0	0	0.75466	1	10490	10490		0.45834	0	1	1671800	+		54407	25113	39598	39914	53085	53085					0.03683688157718734
TLHSVTPAVLQ	11	Unmodified	_TLHSVTPAVLQ_					0	0	0		ENSG00000081148|ENST00000193391|IMPG2	ENSG00000081148|ENST00000193391|IMPG2	ENSG00000081148|ENST00000193391|IMPG2	MULTI-SECPEP	A375_MHC_IP_R1	1	584.0120849609375	2	583.332413	1164.65027	-0.23043	-0.00013442	-0.33129	-0.00019325	-0.56172	-0.00032767	583.3321835937362	50.708	0.30341	50.708	50.51	50.814	0					8	5	2	0	0	0	0.80621	1	17920	17920		10.151	0.076642	1	2632700			54408	1732	39599	39915	53086	53086					0.07453372568852501
TLHVEDPY	8	Unmodified	_TLHVEDPY_					0	0	0			REV__nc|ENSG00000089250|P29475-3|NOS1	REV__nc|ENSG00000089250|P29475-3|NOS1	MULTI-MSMS	A375_MHC_IP_R2	2	487.6346740722656	2	487.234907	972.455261	-0.49023	-0.00023886	0.01523	7.4204E-06	-0.475	-0.00023144	487.2348827519935	47.992	1.2648	48.754	48.429	49.694	0.76127					77	24	5	0	0	0	0.6817	1	18176	18176		40.449	2.4746	1	110270000	+		54409	16910	39600	39916	53087	53087					-0.03206798236146824
TLHVLTHRWEL	11	Unmodified	_TLHVLTHRWEL_					0	0	0		ENST00000357871.6_1_Y:14514177-14532211:-|nuORF	ENST00000357871.6_1_Y:14514177-14532211:-|nuORF	ENST00000357871.6_1_Y:14514177-14532211:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	352.3488464355469	4	351.949119	1403.76737	-0.48697	-0.00017139	0.19705	6.9353E-05	-0.28992	-0.00010204	351.94910537265093	34.4	0.45947	35.153	34.955	35.414	0.75225					14	8	2	0	0	0	1.0005	1	12478	12478		1.1098	0.78048	1	2950500			54410	10989	39601	39917	53088	53088					0.08163530508454642
TLHYTRWVYSW	11	Unmodified	_TLHYTRWVYSW_					0	0	0			REV__ENSG00000161981|ENST00000293861|SNRNP25	REV__ENSG00000161981|ENST00000293861|SNRNP25	MSMS	A375_MHC_IP_R1	1	756.14892578125	2	756.375143	1510.73573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.84	1	106.84	106.34	107.34	0								0	0	0	0.16307	1	39212	39212		2.7352	1.4057	1		+		54411	20226	39602	39918	53089	53089					0.0007953775450459943
TLIAKKALMK	10	Unmodified	_TLIAKKALMK_					0	0	0		SPATA31E1|p.R372K|1|0.37|ENSG00000177992|chr9:87885602-87885602|G/A|missense_variant	SPATA31E1|p.R372K|1|0.37|ENSG00000177992|chr9:87885602-87885602|G/A|missense_variant	SPATA31E1|p.R372K|1|0.37|ENSG00000177992|chr9:87885602-87885602|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	558.7606811523438	2	558.862295	1115.71004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.5	1	143.52	143.02	144.02	0.024414								0	0	0	0.15531	1	56078	56078		3.5965	0	1				54412	29229	39603	39919	53090	53090					0.15680971978531488
TLIDLPGITKV	11	Unmodified	_TLIDLPGITKV_					0	0	0		nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2	nc|ENSG00000197959|Q9UQ16-2|DNM3;nc|ENSG00000079805|P50570-3|DNM2	nc|ENSG00000079805|P50570-3|DNM2	MULTI-SECPEP	A375_MHC_IP_R1	1	585.7080078125	2	585.360639	1168.70673	-0.00060458	-3.539E-07	0.099792	5.8414E-05	0.099187	5.806E-05	585.3606440876516	108.7	1.4731	108.7	108.31	109.78	0					60	28	3	0	0	0	0.038182	1	39855	39855		109.15	43.672	1	20593000			54413	1703;9213	39604	39920	53091	53091					0.12912000405481194
TLIDLPGITKV	11	Unmodified	_TLIDLPGITKV_					0	0	0		nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2	nc|ENSG00000197959|Q9UQ16-2|DNM3;nc|ENSG00000079805|P50570-3|DNM2	nc|ENSG00000079805|P50570-3|DNM2	MULTI-SECPEP	A375_MHC_IP_R2	2	585.70751953125	2	585.360639	1168.70673	-0.51932	-0.00030399	0.26791	0.00015682	-0.25141	-0.00014717	585.3607307175174	107.83	1.43	108.58	108.25	109.68	0.75436					73	27	4	0	0	0	0.020967	1	40730	40730		112.04	52.673	1	28309000			54414	1703;9213	39604	39920	53092	53092					0.12912000405481194
TLIDLYEQV	9	Unmodified	_TLIDLYEQV_					0	0	0		ENSG00000122692|ENST00000397149|SMU1	ENSG00000122692|ENST00000397149|SMU1	ENSG00000122692|ENST00000397149|SMU1	MSMS	A375_MHC_IP_R2	2	547.51416015625	2	547.292422	1092.57029	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.86	1	120.39	119.89	120.89	0.5321								0	0	0	0.0039303	1	45678	45678		96.111	14.498	1				54415	3800	39605	39921	53093	53093					0.027708861749943026
TLIDNQTGV	9	Unmodified	_TLIDNQTGV_					0	0	0			REV__CON__Q28107	REV__CON__Q28107	MSMS	A375_MHC_IP_R2	2	480.6919250488281	2	480.753464	959.492375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.867	1	63.61	63.11	64.11	0.74263								0	0	0	0.13805	1	23834	23834		30.225	2.596	1		+	+	54416	15875	39606	39922	53094	53094					0.011008733096218748
TLIEAIRLY	9	Unmodified	_TLIEAIRLY_					0	0	0		ENSG00000186889|ENST00000335390|TMEM17;ENST00000479763.5_1_2:62729532-62738946:-|nuORF;ENST00000494919.1_1_2:62729532-62733264:-|nuORF	ENSG00000186889|ENST00000335390|TMEM17	ENSG00000186889|ENST00000335390|TMEM17	MULTI-MSMS	A375_MHC_IP_R2	2	364.6025085449219	3	364.553492	1090.63865	-0.044951	-1.6387E-05	0.14882	5.4253E-05	0.10387	3.7866E-05	364.5534800248263	39.787	0.60895	40.562	40.118	40.727	0.77451					24	11	3	0	0	0	0.66474	1	14621	14621		10.151	3.9162	1	3067700			54417	8788	39607	39923	53095	53095					0.09695175545516577
TLIEDILGV	9	Unmodified	_TLIEDILGV_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	A375_MHC_IP_R1	1	487.1837158203125	2	486.784233	971.553913	-0.52205	-0.00025413	-0.47809	-0.00023273	-1.0001	-0.00048685	486.7839664613311	134.09	3.3672	134.09	133.86	137.23	0					126	65	5	0	0	0	0.0070665	3	51696	51696;51927;52147		131.3	34.223	1	653400000			54418	2240	39608	39924	53096;53097;53098	53096					0.06699805008918247
TLIEDILGV	9	Unmodified	_TLIEDILGV_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	A375_MHC_IP_R1	1	973.4699096679688	1	972.561189	971.553913	-0.14168	-0.0001378	-0.33446	-0.00032528	-0.47614	-0.00046308	972.5608745567642	134.09	2.5932	134.09	133.56	136.15	0					113	50	6	0	0	0	0.0094266	1	51826	51826		97.075	32.838	1	847920000			54419	2240	39608	39924	53099	53099					0.06699805008918247
TLIEDILGV	9	Unmodified	_TLIEDILGV_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	A375_MHC_IP_R2	2	487.1839599609375	2	486.784233	971.553913	-0.50259	-0.00024465	0.16082	7.8283E-05	-0.34177	-0.00016637	486.78429112209744	133.97	2.9074	134.13	133.91	136.81	0.16487					121	56	6	0	0	0	0.0094266	2	52684	52684;52905		97.075	11.718	1	685990000			54420	2240	39608	39924	53100;53101	53100					0.06699805008918247
TLIEDILGV	9	Unmodified	_TLIEDILGV_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	A375_MHC_IP_R2	2	973.4717407226562	1	972.561189	971.553913	0.046718	4.5436E-05	0.039086	3.8014E-05	0.085804	8.345E-05	972.5611863288952	133.97	2.2942	134.13	133.96	136.25	0.16487					96	44	4	0	0	0	0.0096264	1	52689	52689		109.63	45.393	1	929360000			54421	2240	39608	39924	53102	53102					0.06699805008918247
TLIEELKTL	9	Unmodified	_TLIEELKTL_					0	0	0		nc|ENSG00000123268|P18846-2|ATF1;ENSG00000123268|ENST00000262053|ATF1	nc|ENSG00000123268|P18846-2|ATF1	nc|ENSG00000123268|P18846-2|ATF1	MULTI-SECPEP	A375_MHC_IP_R1	1	530.7181396484375	2	530.31844	1058.62233	-0.53967	-0.0002862	-0.22492	-0.00011928	-0.76459	-0.00040548	530.3183652829038	100.84	0.50639	100.84	100.53	101.04	0					15	9	2	0	0	0	0.29872	1	37084	37084		67.081	13.248	1	1613800			54422	3838	39609	39925	53103	53103					0.09536049588768947
TLIEELKTL	9	Unmodified	_TLIEELKTL_					0	0	0		nc|ENSG00000123268|P18846-2|ATF1;ENSG00000123268|ENST00000262053|ATF1	nc|ENSG00000123268|P18846-2|ATF1	nc|ENSG00000123268|P18846-2|ATF1	MULTI-SECPEP	A375_MHC_IP_R2	2	530.6448364257812	2	530.31844	1058.62233	-0.3636	-0.00019282	-0.15445	-8.1905E-05	-0.51804	-0.00027473	530.3182541765857	99.867	0.50727	100.63	100.42	100.93	0.76278					15	9	2	0	0	0	0.40495	1	37873	37873		55.503	30.103	1	1259700			54423	3838	39609	39925	53104	53104					0.09536049588768947
TLIEEMLYL	9	Unmodified	_TLIEEMLYL_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-SECPEP	A375_MHC_IP_R1	1	563.1983642578125	2	562.799026	1123.5835	-0.71314	-0.00040136	-0.33061	-0.00018607	-1.0438	-0.00058742	562.7987895900967	134.35	0.25275	134.35	134.22	134.47	0					9	4	3	0	0	0	0.16229	1	51831	51831		57.471	23.369	1	4708500			54424	1082	39610	39926	53105	53105					0.026650009627246618
TLIEEMLYL	9	Unmodified	_TLIEEMLYL_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-SECPEP	A375_MHC_IP_R2	2	563.1986694335938	2	562.799026	1123.5835	-0.45214	-0.00025447	-0.32128	-0.00018082	-0.77342	-0.00043528	562.7987344198948	134.18	0.25864	134.31	134.18	134.44	0.13901					7	4	2	0	0	0	0.3243	1	52816	52816		44.407	21.259	1	2702100			54425	1082	39610	39926	53106	53106					0.026650009627246618
TLIEEREY	8	Unmodified	_TLIEEREY_					0	0	0		nc|ENSG00000164631|P17014-5|ZNF12;nc|ENSG00000164631|P17014-4|ZNF12	nc|ENSG00000164631|P17014-5|ZNF12	nc|ENSG00000164631|P17014-5|ZNF12	MULTI-SECPEP	A375_MHC_IP_R1	1	526.17724609375	2	526.766571	1051.51859	-0.36829	-0.00019401	-1.1827	-0.00062299	-1.551	-0.00081699	527.2674303146922	111.01	0.35699	111.01	110.75	111.1	0					8	6	2	0	0	0	0.90224	1	40692	40692		13.508	8.2772	1	1013200			54426	14732	39611	39927	53107	53107					-0.005108575189069597
TLIEKVQEA	9	Unmodified	_TLIEKVQEA_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1922607421875	2	515.792589	1029.57063	-0.79762	-0.0004114	-0.077003	-3.9717E-05	-0.87462	-0.00045112	515.7925576741746	41.7	0.5126	41.7	41.368	41.88	0					12	9	2	0	0	0	0.23313	1	14441	14441		49.527	11.352	1	3656300			54427	9990	39612	39928	53108	53108					0.057023058948516336
TLIESISGLW	10	Unmodified	_TLIESISGLW_					0	0	0		ENST00000479918.5_1_1:93620306-93620369:-|nuORF	ENST00000479918.5_1_1:93620306-93620369:-|nuORF	ENST00000479918.5_1_1:93620306-93620369:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	560.2083129882812	2	559.808239	1117.60193	-0.47474	-0.00026576	0.66023	0.0003696	0.18549	0.00010384	559.8085211660675	81.548	0.7579	81.548	81.253	82.011	0					24	14	2	0	0	0	0.78945	1	29766	29766		25.399	3.8092	1	3295900			54428	12486	39613	39929	53109	53109					0.047828789289496854
TLIFLAVFTS	10	Unmodified	_TLIFLAVFTS_					0	0	0			REV__nc|ENSG00000211898|P01880|IGHD	REV__nc|ENSG00000211898|P01880|IGHD	MULTI-SECPEP	A375_MHC_IP_R1	1	371.9885559082031	3	371.218109	1110.6325	0.65316	0.00024246	0.20262	7.5216E-05	0.85578	0.00031768	371.5523454475113	21.996	0.25278	21.996	21.86	22.113	0					10	4	3	0	0	0	0.92957	1	5814	5814		5.7834	0.88642	1	745820	+		54429	27483	39614	39930	53110	53110					0.08160657314010678
TLIGHLYRV	9	Unmodified	_TLIGHLYRV_					0	0	0		ENSG00000120318|ENST00000239440|ARAP3;nc|ENSG00000120318|Q8WWN8-2|ARAP3;ENST00000512390.1_1_5:141033519-141041645:-|nuORF	ENSG00000120318|ENST00000239440|ARAP3	ENSG00000120318|ENST00000239440|ARAP3	MULTI-SECPEP	A375_MHC_IP_R1	1	358.2818908691406	3	357.881831	1070.62366	0.0092339	3.3047E-06	0.17464	6.2499E-05	0.18387	6.5803E-05	357.8819108888018	58.236	0.71093	58.236	57.974	58.685	0					22	13	2	0	0	0	0.76106	1	20932	20932		13.615	10.018	1	2623500			54430	3658	39615	39931	53111	53111					0.09117728468186215
TLIGHLYRV	9	Unmodified	_TLIGHLYRV_					0	0	0		ENSG00000120318|ENST00000239440|ARAP3;nc|ENSG00000120318|Q8WWN8-2|ARAP3;ENST00000512390.1_1_5:141033519-141041645:-|nuORF	ENSG00000120318|ENST00000239440|ARAP3	ENSG00000120318|ENST00000239440|ARAP3	MULTI-SECPEP	A375_MHC_IP_R2	2	357.2972106933594	3	357.881831	1070.62366	-0.5948	-0.00021287	0.0099196	3.55E-06	-0.58488	-0.00020932	357.88183217372796	57.179	0.6644	57.929	57.712	58.376	0.75015					21	12	3	0	0	0	0.63622	1	21655	21655		24.991	12.75	1	2503000			54431	3658	39615	39931	53112	53112					0.09117728468186215
TLIGLSIKV	9	Unmodified	_TLIGLSIKV_					0	0	0		ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B;ENST00000569299.1_1_16:66967504-66968009:-|nuORF	ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENST00000569299.1_1_16:66967504-66968009:-|nuORF	ENST00000562362.5_1_16:66966108-66968009:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	472.7127380371094	2	472.312961	942.611368	-0.35014	-0.00016538	0.095266	4.4996E-05	-0.25487	-0.00012038	472.3129292489358	97.381	1.4707	97.381	97.086	98.557	0					62	28	4	0	0	0	0.017727	1	35774	35774		86.332	19.875	1	7434800			54432	7094;13590	39616	39932	53113	53113					0.13776692005137647
TLIGLSIKV	9	Unmodified	_TLIGLSIKV_					0	0	0		ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B;ENST00000569299.1_1_16:66967504-66968009:-|nuORF	ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENST00000569299.1_1_16:66967504-66968009:-|nuORF	ENST00000562362.5_1_16:66966108-66968009:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	472.7130432128906	2	472.312961	942.611368	-0.65934	-0.00031141	0.13766	6.5018E-05	-0.52168	-0.0002464	472.3129448773679	96.446	1.5712	97.202	96.861	98.432	0.75586					54	30	3	0	0	0	0.04093	2	36582	36582;36782		67.838	10.116	1	5870900			54433	7094;13590	39616	39932	53114;53115	53114					0.13776692005137647
TLIGPSGQSI	10	Unmodified	_TLIGPSGQSI_					0	0	0			REV__ENSG00000182179|ENST00000333486|UBA7	REV__ENSG00000182179|ENST00000333486|UBA7	MSMS	A375_MHC_IP_R1	1	486.728759765625	2	486.771657	971.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.24	1	114.24	113.74	114.74	0								0	0	0	0.12316	1	41883	41883		37.974	1.9298	1		+		54434	21676	39617	39933	53116	53116					0.04185750206340799
TLIGPSGQSI	10	Unmodified	_TLIGPSGQSI_					0	0	0			REV__ENSG00000182179|ENST00000333486|UBA7	REV__ENSG00000182179|ENST00000333486|UBA7	MSMS	A375_MHC_IP_R2	2	486.728759765625	2	486.771657	971.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.15	1	113.86	113.36	114.36	0.70985								0	0	0	0.089777	1	42661	42661		45.7	11.298	1		+		54435	21676	39617	39933	53117	53117					0.04185750206340799
TLIGSIVKI	9	Unmodified	_TLIGSIVKI_					0	0	0			REV__ENSG00000102104|ENST00000379984|RS1	REV__ENSG00000102104|ENST00000379984|RS1	MULTI-MSMS	A375_MHC_IP_R1	1	472.7126770019531	2	472.312961	942.611368	-0.35014	-0.00016538	0.095266	4.4996E-05	-0.25487	-0.00012038	472.3129292489358	97.381	1.4707	97.381	97.086	98.557	0					62	28	4	0	0	0	0.36834	1	36008	36008		26.268	1.2772	1	7434800	+		54436	17206	39618	39934	53118	53118					0.13776692005137647
TLIHQVLEA	9	Unmodified	_TLIHQVLEA_					0	0	0		ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	MULTI-SECPEP	A375_MHC_IP_R1	1	512.6951293945312	2	512.295299	1022.57605	-0.7169	-0.00036726	-0.094467	-4.8395E-05	-0.81137	-0.00041566	512.2954843352192	66.794	0.56229	66.794	66.529	67.091	0					18	10	2	0	0	0	0.23894	1	24196	24196		55.503	30.103	1	2865200			54437	3007	39619	39935	53119	53119					0.06566029477335178
TLIHQVLEA	9	Unmodified	_TLIHQVLEA_					0	0	0		ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	MULTI-SECPEP	A375_MHC_IP_R2	2	512.69482421875	2	512.295299	1022.57605	-0.95534	-0.00048942	-0.061472	-3.1492E-05	-1.0168	-0.00052091	512.2954965970024	65.762	0.55949	66.5	66.222	66.782	0.73811					17	10	2	0	0	0	0.27114	1	24946	24946		53.404	32.95	1	2921500			54438	3007	39619	39935	53120	53120					0.06566029477335178
TLIKKLKK	8	Unmodified	_TLIKKLKK_					0	0	0		tr|U7SQK3|U7SQK3_FUSNUSirohydrochlorincobaltochelataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01667PE=4SV=1	tr|U7SQK3|U7SQK3_FUSNUSirohydrochlorincobaltochelataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01667PE=4SV=1	tr|U7SQK3|U7SQK3_FUSNUSirohydrochlorincobaltochelataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01667PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	486.75030517578125	2	486.35242	970.690287	-0.97292	-0.00047318	1.7521	0.00085214	0.77918	0.00037895	486.35209074901104	34.177	0.30407	34.929	34.753	35.057	0.75225					9	5	2	0	0	0	0.77842	1	12288	12288		0.69038	0	1	7514500			54439	29590	39620	39936	53121	53121					0.203769640300834
TLIKKRIKKIN	11	Unmodified	_TLIKKRIKKIN_					0	0	0			REV__tr|U7SIS2|U7SIS2_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02157PE=3SV=1	REV__tr|U7SIS2|U7SIS2_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02157PE=3SV=1	MSMS	A375_MHC_IP_R1	1	677.96630859375	2	677.966471	1353.91839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.384	1	85.384	84.884	85.884	0								0	0	0	0.16336	1	31292	31292		2.9952	1.8019	1		+		54440	28214	39621	39937	53122	53122					0.2555871688714433
TLIKLQKKN	9	Unmodified	_TLIKLQKKN_					0	0	0			REV__nc|ENSG00000068120|Q13057-2|COASY	REV__nc|ENSG00000068120|Q13057-2|COASY	MULTI-MSMS	A375_MHC_IP_R1	1	362.60137939453125	3	362.572886	1084.69683	0.10438	3.7846E-05	0.054761	1.9855E-05	0.15914	5.77E-05	362.57286365502625	37.78	0.45963	37.78	37.556	38.016	0					18	8	3	0	0	0	0.66474	1	12828	12828		10.151	3.0488	1	3021400	+		54441	16539	39622	39938	53123	53123					0.15786857190823866
TLIPKPITQRY	11	Unmodified	_TLIPKPITQRY_					0	0	0		nc|ENSG00000067798|Q8IVL0-3|NAV3;nc|ENSG00000067798|Q8IVL0-2|NAV3;ENSG00000067798|ENST00000397909|NAV3	nc|ENSG00000067798|Q8IVL0-3|NAV3	nc|ENSG00000067798|Q8IVL0-3|NAV3	MSMS	A375_MHC_IP_R1	1	665.6476440429688	2	665.398087	1328.78162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.351	1	93.351	92.851	93.851	0								0	0	0	0.16297	1	34314	34314		3.2813	0	1				54442	1444	39623	39939	53124	53124					0.13038182936747944
TLISELVQA	9	Unmodified	_TLISELVQA_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	A375_MHC_IP_R1	1	487.681884765625	2	487.281857	972.549162	-0.0065073	-3.1709E-06	-0.092133	-4.4895E-05	-0.09864	-4.8066E-05	487.28168397321184	117.15	1.4714	117.15	116.4	117.87	0					57	28	3	0	0	0	0.0099443	2	43007	42966;43007		120.45	39.519	1	33073000			54443	1183	39624	39940	53125;53126	53126					0.06178920866148019
TLISHPLSL	9	Unmodified	_TLISHPLSL_					0	0	0		PCDH9|p.P1085S|1|0.39|ENSG00000184226|chr13:66631297-66631297|G/A|missense_variant	PCDH9|p.P1085S|1|0.39|ENSG00000184226|chr13:66631297-66631297|G/A|missense_variant	PCDH9|p.P1085S|1|0.39|ENSG00000184226|chr13:66631297-66631297|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	491.1924133300781	2	490.792392	979.570232	-0.2239	-0.00010989	0.52943	0.00025984	0.30553	0.00014995	490.7925311839846	93.459	0.51001	93.459	93.329	93.84	0					15	9	2	0	0	0	0.58047	2	34361	34312;34361		15.847	0	1	1461700			54444	15123	39625	39941	53127;53128	53128					0.07962930965663872
TLISHPLSL	9	Unmodified	_TLISHPLSL_					0	0	0		PCDH9|p.P1085S|1|0.39|ENSG00000184226|chr13:66631297-66631297|G/A|missense_variant	PCDH9|p.P1085S|1|0.39|ENSG00000184226|chr13:66631297-66631297|G/A|missense_variant	PCDH9|p.P1085S|1|0.39|ENSG00000184226|chr13:66631297-66631297|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	491.1922607421875	2	490.792392	979.570232	-0.46222	-0.00022685	-0.10132	-4.9727E-05	-0.56354	-0.00027658	490.79222289535585	92.651	0.55629	93.39	93.14	93.696	0.73901					17	10	2	0	0	0	0.32899	1	35245	35245		28.487	0	1	1625200			54445	15123	39625	39941	53129	53129					0.07962930965663872
TLISLRRM	8	Unmodified	_TLISLRRM_					0	0	0			REV__ENSG00000108551|ENST00000225688|RASD1	REV__ENSG00000108551|ENST00000225688|RASD1	MSMS	A375_MHC_IP_R2	2	495.19903564453125	2	495.299862	988.58517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.89	1	126.18	125.68	126.68	0.2951								0	0	0	0.16876	1	49181	49181		5.2307	0	1		+		54446	17536	39626	39942	53130	53130					0.09042099562009298
TLISQNHLI	9	Unmodified	_TLISQNHLI_					0	0	0		ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96	ENSG00000153283|ENST00000352690|CD96	ENSG00000153283|ENST00000352690|CD96	MULTI-SECPEP	A375_MHC_IP_R2	2	519.98583984375	2	519.800749	1037.58694	-0.58465	-0.0003039	-0.18772	-9.7579E-05	-0.77238	-0.00040148	519.8005958720188	64.121	0.86586	64.861	64.547	65.412	0.74022					43	16	4	0	0	0	0.04038	1	24307	24307		66.457	20.757	1	13661000			54447	6023	39627	39943	53131	53131					0.06965431851631365
TLISRDRKQ	9	Unmodified	_TLISRDRKQ_					0	0	0			REV__ENSG00000188827|ENST00000294008|SLX4	REV__ENSG00000188827|ENST00000294008|SLX4	MULTI-SECPEP	A375_MHC_IP_R1	1	559.187744140625	2	558.827829	1115.64111	-0.58134	-0.00032487	4.4279	0.0024745	3.8466	0.0021496	558.8300688772292	80.135	0.30829	80.135	79.879	80.187	0					8	5	2	0	0	0	0.62767	1	29210	29210		23.148	0	1	1466600	+		54448	22118	39628	39944	53132	53132					0.087910240031988
TLKCSENTL	9	Unmodified	_TLKCSENTL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R1	1	504.19921875	2	504.755149	1007.49575	-0.37963	-0.00019162	-1.966	-0.00099235	-2.3456	-0.001184	504.7547859250054	77.476	0.40367	77.476	77.184	77.588	0					12	7	2	0	0	0	0.60917	1	28218	28218		13.906	0.39817	1	699860	+		54449	19932	39629	39945	53133	53133					-0.007701999080154565
TLKDTITSV	9	Unmodified	_TLKDTITSV_					0	0	0		nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	MULTI-SECPEP	A375_MHC_IP_R2	2	489.67919921875	2	489.279315	976.544076	-0.53773	-0.0002631	-0.19914	-9.7437E-05	-0.73687	-0.00036054	489.27926908474507	48.333	0.55513	49.091	48.879	49.434	0.75737					15	10	2	0	0	0	0.074405	1	18181	18181		70.332	12.61	1	2098000			54450	6852	39630	39946	53134	53134					0.054866170035211326
TLKDTQEFH	9	Unmodified	_TLKDTQEFH_					0	0	0		ENSG00000189108|ENST00000372582|IL1RAPL2	ENSG00000189108|ENST00000372582|IL1RAPL2	ENSG00000189108|ENST00000372582|IL1RAPL2	MULTI-SECPEP	A375_MHC_IP_R2	2	559.1458740234375	2	559.77747	1117.54039	-0.4949	-0.00027704	1.7236	0.00096481	1.2287	0.00068778	560.280571220051	93.883	0.20222	94.627	94.515	94.717	0.74474					5	3	2	0	0	0	0.75466	1	35700	35700		7.9102	0	1	761680			54451	8960	39631	39947	53135	53135					-0.013680527703400003
TLKEDLTKLKT	11	Unmodified	_TLKEDLTKLKT_					0	0	0		nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L;ENSG00000168386|ENST00000477258|FILIP1L;FILIP1L|p.L750Tfs*16|1|0.33|ENSG00000168386|chr3:99849428-99849429|-/T|frameshift_variant	nc|ENSG00000168386|Q4L180-6|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	MULTI-MSMS	A375_MHC_IP_R2	2	646.2885131835938	2	645.387385	1288.76022	-0.49596	-0.00032009	-0.47197	-0.0003046	-0.96793	-0.00062469	645.3868693378856	145.13	0.63654	145.15	144.8	145.44	0.021408					43	28	2	0	0	0	0.73934	1	56645	56645		0	0	1	537960			54452	7294	39632	39948	53136	53136					0.12738753117332635
TLKEDLTKLKT	11	Unmodified	_TLKEDLTKLKT_					0	0	0		nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L;ENSG00000168386|ENST00000477258|FILIP1L;FILIP1L|p.L750Tfs*16|1|0.33|ENSG00000168386|chr3:99849428-99849429|-/T|frameshift_variant	nc|ENSG00000168386|Q4L180-6|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	645.387385	1288.76022	-0.77791	-0.00050206	-0.31513	-0.00020338	-1.093	-0.00070544	645.3870556034411	145.12	0.66954	145.12	144.72	145.39	0	-0.012852	9.9656E-05	NaN	0	33	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	492980			54453	7294	39632	39948							0.12738753117332635
TLKEDLTKLKT	11	Unmodified	_TLKEDLTKLKT_					0	0	0		nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L;ENSG00000168386|ENST00000477258|FILIP1L;FILIP1L|p.L750Tfs*16|1|0.33|ENSG00000168386|chr3:99849428-99849429|-/T|frameshift_variant	nc|ENSG00000168386|Q4L180-6|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	645.387385	1288.76022	-0.49596	-0.00032009	-0.47197	-0.0003046	-0.96793	-0.00062469	645.3868693378856	145.13	0.63654	145.15	144.8	145.44	0.021408	0.012852	-0.00010279	NaN	0	43	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	537960			54454	7294	39632	39948							0.12738753117332635
TLKEELKQL	9	Unmodified	_TLKEELKQL_					0	0	0			REV__ENSG00000206073|ENST00000341074|SERPINB4	REV__ENSG00000206073|ENST00000341074|SERPINB4	MULTI-SECPEP	A375_MHC_IP_R1	1	367.2696228027344	3	367.888651	1100.64412	-0.047898	-1.7621E-05	1.75	0.00064381	1.7021	0.00062618	367.8891224959183	36.762	0.30438	36.762	36.541	36.845	0					7	5	2	0	0	0	0.76187	1	12282	12282		4.5289	0	1	1305800	+		54455	16425	39633	39949	53137	53137					0.09782854337322533
TLKFKAATVK	10	Unmodified	_TLKFKAATVK_					0	0	0			REV__ENSG00000168010|ENST00000321297|ATG16L2	REV__ENSG00000168010|ENST00000321297|ATG16L2	MULTI-MSMS	A375_MHC_IP_R2	2	370.28509521484375	3	369.569253	1105.68593	-0.017845	-6.595E-06	0.017965	6.6395E-06	0.00012036	4.4483E-08	369.56918041362235	19.943	0.60626	20.553	20.095	20.701	0.61029					26	11	3	0	0	0	0.72061	1	6085	6085		3.0723	0.57378	1	1589000	+		54456	20818	39634	39950	53138	53138					0.13731454816502264
TLKGQALTFL	10	Unmodified	_TLKGQALTFL_					0	0	0			REV__ENSG00000162769|ENST00000366971|FLVCR1	REV__ENSG00000162769|ENST00000366971|FLVCR1	MSMS	A375_MHC_IP_R1	1	364.6107177734375	3	364.553492	1090.63865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.597	1	44.597	44.097	45.097	0								0	0	0	0.15306	1	15568	15568		10.899	0.74838	1		+		54457	20306	39635	39951	53139	53139					0.0969517554549384
TLKGRGESDY	10	Unmodified	_TLKGRGESDY_					0	0	0			REV__nc|ENSG00000138101|O60941-6|DTNB	REV__nc|ENSG00000138101|O60941-6|DTNB	MULTI-MSMS	A375_MHC_IP_R1	1	563.2202758789062	2	563.280377	1124.5462	-0.46005	-0.00025914	-0.88213	-0.00049689	-1.3422	-0.00075603	563.280434661407	75.895	0.80561	75.895	75.514	76.319	0					29	15	3	0	0	0	0.45919	1	27699	27699		30.637	6.616	1	3409200	+		54458	19064	39636	39952	53140	53140					-0.011089542586660173
TLKGRGESDY	10	Unmodified	_TLKGRGESDY_					0	0	0			REV__nc|ENSG00000138101|O60941-6|DTNB	REV__nc|ENSG00000138101|O60941-6|DTNB	MULTI-SECPEP	A375_MHC_IP_R1	1	563.6801147460938	2	563.280377	1124.5462	-0.46005	-0.00025914	-0.88213	-0.00049689	-1.3422	-0.00075603	563.280434661407	75.895	0.80561	75.895	75.514	76.319	0					29	15	3	0	0	0	0.88361	1	27661	27661		13.042	3.6593	1	3409200	+		54459	19064	39636	39952	53141	53141					-0.011089542586660173
TLKHAHKV	8	Unmodified	_TLKHAHKV_					0	0	0			REV__ENST00000450418.1_1_3:4024502-4025426:-|nuORF	REV__ENST00000450418.1_1_3:4024502-4025426:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	467.6847839355469	2	467.285069	932.555585	-0.84026	-0.00039264	0.20462	9.5618E-05	-0.63564	-0.00029702	467.285062157774	30.032	0.71091	30.737	30.492	31.203	0.70547					24	13	2	0	0	0	0.90224	1	10511	10511		8.5933	0	1	4314900	+		54460	24884	39637	39953	53142	53142					0.08660903608176795
TLKHLEQFAT	10	Unmodified	_TLKHLEQFAT_					0	0	0		nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MULTI-SECPEP	A375_MHC_IP_R1	1	396.10833740234375	3	396.552151	1186.63462	-0.13723	-5.4418E-05	0.36001	0.00014276	0.22279	8.8346E-05	396.55186506545846	34.583	0.25423	34.583	34.353	34.608	0					5	4	2	0	0	0	0.93407	1	11363	11363		7.0371	4.5386	1	585750			54461	3898	39638	39954	53143	53143					0.048770860518061454
TLKHQMELN	9	Unmodified	_TLKHQMELN_					0	0	0		ENST00000370751.9_1_1:79110053-79110347:+|nuORF	ENST00000370751.9_1_1:79110053-79110347:+|nuORF	ENST00000370751.9_1_1:79110053-79110347:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	372.601318359375	3	371.862219	1112.56483	0.78117	0.00029049	-0.22239	-8.2698E-05	0.55879	0.00020779	371.86227122999804	48.806	0.65746	48.806	48.476	49.134	0					17	12	2	0	0	0	0.60917	1	17277	17277		13.615	6.5778	1	5586100			54462	11155	39639	39955	53144	53144					0.013048841115505638
TLKIFKLTQ	9	Unmodified	_TLKIFKLTQ_					0	0	0		TCTE1|p.R288Q|1|0.39|ENSG00000146221|chr6:44282543-44282543|C/T|missense_variant	TCTE1|p.R288Q|1|0.39|ENSG00000146221|chr6:44282543-44282543|C/T|missense_variant	TCTE1|p.R288Q|1|0.39|ENSG00000146221|chr6:44282543-44282543|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	365.2333984375	3	364.56562	1090.67503	0.1316	4.7975E-05	-0.071985	-2.6243E-05	0.059611	2.1732E-05	364.56564061282313	27.339	0.50598	27.339	27.128	27.634	0					23	9	3	0	0	0	0.66474	1	8337	8337		10.151	3.5202	1	4093000			54463	29314	39640	39956	53145	53145					0.13332052442206077
TLKKDDTTF	9	Unmodified	_TLKKDDTTF_					0	0	0		ENST00000430760.5_1_7:90193173-90237846:+|nuORF	ENST00000430760.5_1_7:90193173-90237846:+|nuORF	ENST00000430760.5_1_7:90193173-90237846:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	357.2567443847656	3	356.85724	1067.54989	-0.53529	-0.00019102	-0.010768	-3.8425E-06	-0.54606	-0.00019487	356.85714892105074	23.244	0.55814	23.874	23.521	24.079	0.63015					17	10	3	0	0	0	0.63622	1	7454	7454		14.405	0	1	3956700			54464	11860	39641	39957	53146	53146					0.018817155151737097
TLKKIRRFK	9	Unmodified	_TLKKIRRFK_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	MULTI-SECPEP	A375_MHC_IP_R1	1	595.1123046875	2	595.398225	1188.7819	-0.43636	-0.00025981	3.5685	0.0021247	3.1321	0.0018648	595.9027043854672	77.146	0.45546	77.146	76.981	77.436	0					9	8	2	0	0	0	0.81779	1	28137	28137		0	0	1	876150			54465	6902	39642	39958	53147	53147					0.1950564744724943
TLKKLVQRL	9	Unmodified	_TLKKLVQRL_					0	0	0		nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;TEP1|p.Y977Mfs*28|1|0.26|ENSG00000129566|chr14:20386128-20386128|A/-|frameshift_variant;ENST00000557627.1_1_14:20869071-20871634:-|nuORF	nc|ENSG00000129566|Q99973-2|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	MSMS	A375_MHC_IP_R1	1	366.9415283203125	3	366.916764	1097.72846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.229	1	38.229	37.729	38.729	0								0	0	0	0.15486	1	12949	12949		11.495	3.0504	1				54466	4199	39643	39959	53148	53148					0.18350849944749825
TLKKLWDQL	9	Unmodified	_TLKKLWDQL_					0	0	0			REV__nc|ENSG00000115464|Q70CQ2-3|USP34	REV__nc|ENSG00000115464|Q70CQ2-3|USP34	MULTI-SECPEP	A375_MHC_IP_R2	2	573.2400512695312	2	572.839874	1143.66519	-0.26084	-0.00014942	0.10321	5.9121E-05	-0.15763	-9.0296E-05	572.8399627019625	108.14	0.51242	108.89	108.56	109.07	0.75436					15	9	2	0	0	0	0.60917	1	40864	40864		19.257	9.8739	1	2437600	+		54467	17889	39644	39960	53149	53149					0.09910864436847078
TLKKPVVQY	9	Unmodified	_TLKKPVVQY_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	A375_MHC_IP_R1	1	538.7288208007812	2	538.329142	1074.64373	-0.43885	-0.00023625	-0.49831	-0.00026826	-0.93716	-0.0005045	538.3288754470262	92.516	0.40628	92.516	92.312	92.718	0					13	7	2	0	0	0	0.74875	1	34044	34044		10.824	4.6181	1	1216700	+		54468	16799	39645	39961	53150	53150					0.10939479408125408
TLKKPVVQY	9	Unmodified	_TLKKPVVQY_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-MATCH	A375_MHC_IP_R2	2		2	538.329142	1074.64373	-0.77278	-0.00041601	0.10385	5.5907E-05	-0.66892	-0.0003601	538.3288630979132	91.616	0.35806	92.351	92.172	92.53	0.7345	-0.082747	0.00049733	NaN	10.824	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1854400	+		54469	16799	39645	39961							0.10939479408125408
TLKKVLKRIR	10	Unmodified	_TLKKVLKRIR_					0	0	0		tr|U7SGG0|U7SGG0_FUSNUGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmSPE=3SV=1	tr|U7SGG0|U7SGG0_FUSNUGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmSPE=3SV=1	tr|U7SGG0|U7SGG0_FUSNUGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmSPE=3SV=1	MSMS	A375_MHC_IP_R2	2	628.1959228515625	2	627.940257	1253.86596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.392	1	39.167	38.667	39.667	0.77451								0	0	0	0.15629	1	14125	14125		0.40072	0	1				54470	29403	39646	39962	53151	53151					0.24918178544180591
TLKLHVPSVI	10	Unmodified	_TLKLHVPSVI_					0	0	0		SLC4A5|p.P802L|1|0.35|ENSG00000188687|chr2:74235129-74235129|G/A|missense_variant	SLC4A5|p.P802L|1|0.35|ENSG00000188687|chr2:74235129-74235129|G/A|missense_variant	SLC4A5|p.P802L|1|0.35|ENSG00000188687|chr2:74235129-74235129|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	369.96917724609375	3	369.569253	1105.68593	0.044624	1.6492E-05	0.1405	5.1926E-05	0.18513	6.8418E-05	369.5692765190145	24.036	0.25653	24.679	24.499	24.755	0.64368					8	4	2	0	0	0	0.71946	1	7863	7863		3.5871	0	1	4573200			54471	29186	39647	39963	53152	53152					0.13731454816525002
TLKLKDFSIV	10	Unmodified	_TLKLKDFSIV_					0	0	0			REV__ENST00000606521.1_1_6:85452265-85472428:-|nuORF	REV__ENST00000606521.1_1_6:85452265-85472428:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	388.9722900390625	3	388.572663	1162.69616	0.092579	3.5974E-05	-0.62877	-0.00024432	-0.53619	-0.00020835	388.5723552432558	25.538	0.55863	25.538	25.408	25.966	0					28	10	4	0	0	0	0.70174	1	7519	7519		11.518	0	1	15452000	+		54472	17758	39648	39964	53153	53153					0.1213201775105972
TLKMEKEW	8	Oxidation (M)	_TLKM(Oxidation (M))EKEW_		TLKM(1)EKEW		TLKM(61)EKEW	0	0	1			REV__nc|ENSG00000134369|Q8NEY1-5|NAV1	REV__nc|ENSG00000134369|Q8NEY1-5|NAV1	MULTI-MSMS	A375_MHC_IP_R1	1	541.1710205078125	2	540.773342	1079.53213	-0.63602	-0.00034394	-2.9434	-0.0015917	-3.5794	-0.0019357	540.7728631613014	60.469	0.71198	60.469	60.109	60.821	0					28	13	3	0	0	0	0.27045	2	21756	21756;21790		61.357	14.093	1	3516400	+		54473	18774	39649	39965	53154;53155	53154		478			-0.004453230113085738
TLKMEKEW	8	Oxidation (M)	_TLKM(Oxidation (M))EKEW_		TLKM(1)EKEW		TLKM(61)EKEW	0	0	1			REV__nc|ENSG00000134369|Q8NEY1-5|NAV1	REV__nc|ENSG00000134369|Q8NEY1-5|NAV1	MULTI-SECPEP	A375_MHC_IP_R1	1	541.1710205078125	2	540.773342	1079.53213	-0.63602	-0.00034394	-2.9434	-0.0015917	-3.5794	-0.0019357	540.7728631613014	60.469	0.71198	60.469	60.109	60.821	0					28	13	3	0	0	0	0.51146	1	21756	21756		61.357	7.5247	1	3516400	+		54474	18774	39649	39965	53156	53156		478			-0.004453230113085738
TLKMSLEYL	9	Unmodified	_TLKMSLEYL_					0	0	0			REV__ENSG00000179761|ENST00000323372|PIPOX	REV__ENSG00000179761|ENST00000323372|PIPOX	MULTI-SECPEP	A375_MHC_IP_R2	2	366.5976257324219	3	366.535221	1096.58383	-0.10415	-3.8176E-05	-2.448	-0.00089727	-2.5521	-0.00093545	366.8695420878787	54.408	0.6073	55.159	54.865	55.473	0.75075					25	11	3	0	0	0	0.76187	1	20519	20519		0.86438	0	1	1660200	+		54475	21578	39650	39966	53157	53157					0.03940420682579315
TLKNKYKF	8	Unmodified	_TLKNKYKF_					0	0	0			REV__tr|U7ST35|U7ST35_FUSNUUvrD-likehelicaseATP-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01268PE=4SV=1	REV__tr|U7ST35|U7ST35_FUSNUUvrD-likehelicaseATP-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01268PE=4SV=1	MSMS	A375_MHC_IP_R1	1	521.4822387695312	2	521.30821	1040.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.802	1	76.802	76.302	77.302	0								0	0	0	0.16876	1	28003	28003		5.2307	0	1		+		54476	28457	39651	39967	53158	53158					0.0831892371959384
TLKNPILW	8	Unmodified	_TLKNPILW_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-MSMS	A375_MHC_IP_R1	1	493.1973571777344	2	492.797478	983.580402	-0.54752	-0.00026982	0.11337	5.587E-05	-0.43415	-0.00021395	492.79735029857557	86.244	0.75878	86.244	85.921	86.679	0					27	14	3	0	0	0	0.15393	1	31624	31624		85.272	27.801	1	3841000			54477	3557	39652	39968	53159	53159					0.08795538690890226
TLKNPILW	8	Unmodified	_TLKNPILW_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-SECPEP	A375_MHC_IP_R2	2	493.1973876953125	2	492.797478	983.580402	-0.36103	-0.00017791	-0.056017	-2.7605E-05	-0.41705	-0.00020552	492.7973085443138	85.179	0.96843	85.915	85.523	86.492	0.73601					34	18	3	0	0	0	0.1889	1	32401	32401		96.285	28.941	1	3023400			54478	3557	39652	39968	53160	53160					0.08795538690890226
TLKQDEFER	9	Unmodified	_TLKQDEFER_					0	0	0			REV__nc|ENSG00000206562|Q8TCB7-2|METTL6	REV__nc|ENSG00000206562|Q8TCB7-2|METTL6	MULTI-SECPEP	A375_MHC_IP_R1	1	388.9642639160156	3	389.199777	1164.5775	0.08411	3.2736E-05	-0.14876	-5.7899E-05	-0.064653	-2.5163E-05	389.19964955480606	25.588	0.55981	25.588	25.306	25.866	0					16	10	2	0	0	0	0.56537	1	7468	7468		21.59	14.488	1	2590200	+		54479	22599	39653	39969	53161	53161					0.001796187754280254
TLKQQSQKF	9	Unmodified	_TLKQQSQKF_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MSMS	A375_MHC_IP_R1	1	369.91485595703125	3	369.876746	1106.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.469	1	20.469	19.969	20.969	0								0	0	0	0.15486	1	5261	5261		4.5289	0.33936	1		+		54480	22304	39654	39970	53162	53162					0.05936816880330298
TLKRETLF	8	Unmodified	_TLKRETLF_					0	0	0			REV__nc|ENSG00000227345|Q86W56-3|PARG	REV__nc|ENSG00000227345|Q86W56-3|PARG	MULTI-MSMS	A375_MHC_IP_R2	2	504.6973571777344	2	504.297842	1006.58113	-0.95685	-0.00048254	0.12666	6.3875E-05	-0.83019	-0.00041866	504.2979200406992	54.223	0.76128	54.973	54.66	55.422	0.75075					31	14	3	0	0	0	0.68964	1	20457	20457		37.974	1.847	1	6479700	+		54481	22729	39655	39971	53163	53163					0.07810333339944009
TLKRETLF	8	Unmodified	_TLKRETLF_					0	0	0			REV__nc|ENSG00000227345|Q86W56-3|PARG	REV__nc|ENSG00000227345|Q86W56-3|PARG	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	504.297842	1006.58113	-0.95685	-0.00048254	0.12666	6.3875E-05	-0.83019	-0.00041866	504.2979200406992	54.223	0.76128	54.973	54.66	55.422	0.75075	-0.16542	0.00018903	NaN	37.974	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6479700	+		54482	22729	39655	39971							0.07810333339944009
TLKRKRKA	8	Unmodified	_TLKRKRKA_					0	0	0			REV__ENSG00000121621|ENST00000263181|KIF18A	REV__ENSG00000121621|ENST00000263181|KIF18A	MULTI-SECPEP	A375_MHC_IP_R2	2	1000.4876708984375	1	1000.67381	999.666532	0.047089	4.712E-05	-2.4199	-0.0024215	-2.3728	-0.0023744	1000.6714092806825	126.54	0.35197	126.84	126.63	126.99	0.2951					9	6	2	0	0	0	0.972	1	49429	49429		0.69038	0	1	7370700	+		54483	18166	39656	39972	53164	53164					0.1666854331626837
TLKSDRYPI	9	Unmodified	_TLKSDRYPI_					0	0	0			REV__ENSG00000101350|ENST00000375712|KIF3B	REV__ENSG00000101350|ENST00000375712|KIF3B	MULTI-MSMS	A375_MHC_IP_R2	2	548.7059936523438	2	546.806031	1091.59751	-1.2303	-0.00067272	-0.44156	-0.00024145	-1.6718	-0.00091417	546.8061611935392	56.794	0.81548	57.545	57.255	58.071	0.75015					54	15	5	0	0	0	0.46038	1	21594	21594		21.747	0	1	19955000	+		54484	17164	39657	39973	53165	53165					0.05537414506034111
TLKSFIRAIN	10	Unmodified	_TLKSFIRAIN_					0	0	0			REV__nc|ENSG00000118690|Q8NEN0-2|ARMC2	REV__nc|ENSG00000118690|Q8NEN0-2|ARMC2	MULTI-MSMS	A375_MHC_IP_R2	2	388.6361389160156	3	388.236274	1161.68699	0.026571	1.0316E-05	-0.24581	-9.5433E-05	-0.21924	-8.5117E-05	388.23610715325157	47.286	0.40795	48.048	47.867	48.275	0.76128					13	7	2	0	0	0	0.69306	1	17757	17757		12.175	0.65687	1	3362800	+		54485	18050	39658	39974	53166	53166					0.11261669185432766
TLKSFIRAIN	10	Unmodified	_TLKSFIRAIN_					0	0	0			REV__nc|ENSG00000118690|Q8NEN0-2|ARMC2	REV__nc|ENSG00000118690|Q8NEN0-2|ARMC2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	388.236274	1161.68699	0.026571	1.0316E-05	-0.24581	-9.5433E-05	-0.21924	-8.5117E-05	388.23610715325157	47.286	0.40795	48.048	47.867	48.275	0.76128	-0.19076	0.00039047	NaN	12.175	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3362800	+		54486	18050	39658	39974							0.11261669185432766
TLKSGLTMV	9	Unmodified	_TLKSGLTMV_					0	0	0		nc|ENSG00000141376|Q9H6U6-6|BCAS3;ENSG00000141376|ENST00000407086|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3	nc|ENSG00000141376|Q9H6U6-6|BCAS3	nc|ENSG00000141376|Q9H6U6-6|BCAS3	MSMS	A375_MHC_IP_R1	1	475.4737854003906	2	475.272978	948.531403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.247	1	32.247	31.747	32.747	0								0	0	0	0.15486	1	10402	10402		7.2892	0	1				54487	5232	39659	39975	53167	53167					0.05507882339634307
TLKSLAWHTA	10	Unmodified	_TLKSLAWHTA_					0	0	0		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;ENST00000583043.5_1_18:67684852-67806940:-|nuORF	nc|ENSG00000176225|Q86VV8-3|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-SECPEP	A375_MHC_IP_R1	1	564.226318359375	2	564.314023	1126.61349	-0.41307	-0.0002331	4.4808	0.0025286	4.0677	0.0022954	564.8185115578394	74.835	0.35615	74.835	74.653	75.009	0					8	6	2	0	0	0	0.8528	1	27309	27309		16.149	6.0752	1	1339900			54488	8010	39660	39976	53168	53168					0.055251207429591886
TLKSQQIW	8	Unmodified	_TLKSQQIW_					0	0	0			REV__ENST00000471538.1_1_1:16200459-16203174:+|nuORF	REV__ENST00000471538.1_1_1:16200459-16203174:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	501.65570068359375	2	502.282192	1002.54983	-0.74167	-0.00037253	0.67085	0.00033695	-0.070824	-3.5573E-05	502.28240941021863	55.771	0.50803	56.521	56.237	56.745	0.75015					21	9	3	0	0	0	0.8211	1	20989	20989		30.225	7.0764	1	3959700	+		54489	25121	39661	39977	53169	53169					0.048657603058586574
TLKVHDYY	8	Unmodified	_TLKVHDYY_					0	0	0			REV__tr|U7SEM5|U7SEM5_FUSNUCRISPRsystemsingle-strand-specificdeoxyribonucleaseCas10/Csm1(subtypeIII-A)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02355PE=3SV=1	REV__tr|U7SEM5|U7SEM5_FUSNUCRISPRsystemsingle-strand-specificdeoxyribonucleaseCas10/Csm1(subtypeIII-A)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02355PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	520.7164306640625	2	519.766374	1037.5182	-0.42198	-0.00021933	0.16066	8.3507E-05	-0.26132	-0.00013582	519.7664634818256	62.93	0.66752	62.93	62.505	63.173	0					25	12	3	0	0	0	0.77515	1	22764	22764		12.532	0	1	3715300	+		54490	28162	39662	39978	53170	53170					0.0009376755190260155
TLKVSPRGI	9	Unmodified	_TLKVSPRGI_					0	0	0		ENST00000488127.1_1_1:25880414-25890333:+|nuORF;ENSG00000157978|ENST00000374338|LDLRAP1	ENST00000488127.1_1_1:25880414-25890333:+|nuORF	ENST00000488127.1_1_1:25880414-25890333:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	486.2052307128906	2	485.805834	969.597115	-0.20273	-9.8489E-05	0.085549	4.156E-05	-0.11718	-5.6929E-05	485.805759373895	53.596	0.61137	53.596	53.301	53.912	0					18	11	2	0	0	0	0.74412	1	19148	19148		10.074	5.7447	1	1464200			54491	6278	39663	39979	53171	53171					0.11110039576851705
TLKVSPRGI	9	Unmodified	_TLKVSPRGI_					0	0	0		ENST00000488127.1_1_1:25880414-25890333:+|nuORF;ENSG00000157978|ENST00000374338|LDLRAP1	ENST00000488127.1_1_1:25880414-25890333:+|nuORF	ENST00000488127.1_1_1:25880414-25890333:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	485.805834	969.597115	-1.0467	-0.00050847	0.29445	0.00014304	-0.75221	-0.00036543	485.8058576138455	52.496	0.50712	53.248	53.032	53.54	0.75225	-0.17382	0.00011467	NaN	1.3295	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1751100			54492	6278	39663	39979							0.11110039576851705
TLKVTFQKESR	11	Unmodified	_TLKVTFQKESR_					0	0	0		ENSG00000072135|ENST00000175756|PTPN18;ENST00000483617.5_2_2:131126744-131127839:+|nuORF;nc|ENSG00000072135|Q99952-2|PTPN18	ENSG00000072135|ENST00000175756|PTPN18	ENSG00000072135|ENST00000175756|PTPN18	MULTI-SECPEP	A375_MHC_IP_R1	1	446.99169921875	3	446.257626	1335.75105	0.17626	7.8657E-05	-0.36856	-0.00016447	-0.1923	-8.5814E-05	446.5916902789324	21.377	0.40693	21.377	21.199	21.606	0					13	7	2	0	0	0	0.99252	1	5647	5647		8.2864	4.4405	1	2550300			54493	1531	39664	39980	53172	53172					0.09660404551686952
TLKYCFNK	8	Unmodified	_TLKYCFNK_					0	0	0			REV__EFCAB6|p.D1100N|1|0.77|ENSG00000186976|chr22:43576419-43576419|C/T|missense_variant	REV__EFCAB6|p.D1100N|1|0.77|ENSG00000186976|chr22:43576419-43576419|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	509.1651916503906	2	508.76532	1015.51609	-0.68341	-0.0003477	1.7634	0.00089718	1.08	0.00054949	508.7660125975366	134.1	0.35504	134.1	133.97	134.32	0					16	6	3	0	0	0	0.77624	1	51756	51756		8.5933	1.8701	1	8180000	+		54494	16065	39665	39981	53173	53173					0.008950155424372497
TLKYMYGVNA	10	Unmodified	_TLKYMYGVNA_					0	0	0		nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-SECPEP	A375_MHC_IP_R2	2	580.6661987304688	2	580.294442	1158.57433	-0.50267	-0.00029169	1.3217	0.00076699	0.81905	0.00047529	580.2944033866994	97.093	0.71093	97.849	97.62	98.331	0.75586					30	13	4	0	0	0	0.72086	1	36803	36803		8.7454	5.7502	1	2205400			54495	5625	39666	39982	53174	53174					0.0013865239707229193
TLKYMYGVNA	10	Unmodified	_TLKYMYGVNA_					0	0	0		nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-MATCH	A375_MHC_IP_R1	1		2	580.294442	1158.57433	-0.1482	-8.5998E-05	0.94344	0.00054747	0.79524	0.00046147	580.2952533939769	98.007	0.45702	98.007	97.743	98.2	0	0.078964	-0.00017811	NaN	8.7454	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1785600			54496	5625	39666	39982							0.0013865239707229193
TLLAGHGHRL	10	Unmodified	_TLLAGHGHRL_					0	0	0		ENST00000429681.1_1_3:49017674-49021180:-|nuORF	ENST00000429681.1_1_3:49017674-49021180:-|nuORF	ENST00000429681.1_1_3:49017674-49021180:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	359.2763671875	3	358.87708	1073.60941	-0.11688	-4.1946E-05	-1.3845	-0.00049685	-1.5013	-0.0005388	358.8765499959368	32.846	0.40511	32.846	32.634	33.04	0					11	7	2	0	0	0	0.83355	1	10696	10696		7.4771	0	1	1669800			54497	11844	39667	39983	53175	53175					0.07555076039898267
TLLAKGPI	8	Unmodified	_TLLAKGPI_					0	0	0			REV__ENSG00000111249|ENST00000261726|CUX2	REV__ENSG00000111249|ENST00000261726|CUX2	MULTI-SECPEP	A375_MHC_IP_R1	1	406.62054443359375	2	406.765646	811.516739	-0.22454	-9.1336E-05	0.46701	0.00018996	0.24247	9.8629E-05	406.7657721216063	68.781	0.35381	68.781	68.616	68.969	0					10	6	2	0	0	0	0.972	1	25009	25009		12.532	0	1	561180	+		54498	17658	39668	39984	53176	53176					0.10344178253808423
TLLAPGFLYS	10	Unmodified	_TLLAPGFLYS_					0	0	0		ENST00000485901.1_1_6:32974617-32975137:-|nuORF	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	540.7080078125	2	541.30005	1080.58555	-0.59111	-0.00031997	0.14168	7.6691E-05	-0.44943	-0.00024328	541.3002989940363	96.334	0.66085	96.334	96.069	96.73	0					20	12	2	0	0	0	0.85215	1	35540	35540		14.838	0	1	2383900			54499	12577	39669	39985	53177	53177					0.04847797762840855
TLLAPGFLYS	10	Unmodified	_TLLAPGFLYS_					0	0	0		ENST00000485901.1_1_6:32974617-32975137:-|nuORF	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	540.7078247070312	2	541.30005	1080.58555	-0.6755	-0.00036565	0.26048	0.000141	-0.41502	-0.00022465	541.2999919491062	95.449	0.66283	96.2	95.99	96.653	0.75045					19	12	2	0	0	0	0.85215	1	36368	36368		14.838	8.1151	1	1789100			54500	12577	39669	39985	53178	53178					0.04847797762840855
TLLAQTIL	8	Unmodified	_TLLAQTIL_					0	0	0			REV__nc|ENSG00000138674|O94979-7|SEC31A	REV__nc|ENSG00000138674|O94979-7|SEC31A	MULTI-MSMS	A375_MHC_IP_R1	1	437.1761474609375	2	436.776211	871.537869	-0.16141	-7.0499E-05	-0.18385	-8.03E-05	-0.34526	-0.0001508	436.7760846684843	99.462	1.0604	99.462	99.117	100.18	0					43	20	3	0	0	0	0.16799	1	36478	36478		74.423	3.7072	1	40722000	+		54501	19112	39670	39986	53179	53179					0.09696143562666748
TLLAQTIL	8	Unmodified	_TLLAQTIL_					0	0	0			REV__nc|ENSG00000138674|O94979-7|SEC31A	REV__nc|ENSG00000138674|O94979-7|SEC31A	MULTI-SECPEP	A375_MHC_IP_R2	2	437.17633056640625	2	436.776211	871.537869	-0.25423	-0.00011104	0.18222	7.959E-05	-0.072012	-3.1453E-05	436.77623432569976	98.467	0.91459	99.227	98.793	99.708	0.75977					45	17	4	0	0	0	0.40488	1	37283	37283		67.344	21.323	1	34392000	+		54502	19112	39670	39986	53180	53180					0.09696143562666748
TLLATTISEL	10	Unmodified	_TLLATTISEL_					0	0	0		ENSG00000125812|ENST00000338121|GZF1;nc|ENSG00000125812|Q9H116-4|GZF1	ENSG00000125812|ENST00000338121|GZF1	ENSG00000125812|ENST00000338121|GZF1	MULTI-SECPEP	A375_MHC_IP_R2	2	354.27783203125	3	354.54114	1060.60159	-0.45077	-0.00015982	1.1492	0.00040742	0.69838	0.00024761	354.5414304847974	51.593	0.5073	52.345	52.118	52.626	0.75225					14	9	2	0	0	0	0.92957	1	19499	19499		1.5923	0.26275	1	3396600			54503	3991	39671	39987	53181	53181					0.073714592090937
TLLATTISEL	10	Unmodified	_TLLATTISEL_					0	0	0		ENSG00000125812|ENST00000338121|GZF1;nc|ENSG00000125812|Q9H116-4|GZF1	ENSG00000125812|ENST00000338121|GZF1	ENSG00000125812|ENST00000338121|GZF1	MULTI-MATCH	A375_MHC_IP_R1	1		3	354.54114	1060.60159	-0.1131	-4.01E-05	1.057	0.00037474	0.94387	0.00033464	354.54152248857173	52.58	0.30674	52.58	52.387	52.694	0	0.1171	-2.6045E-05	NaN	1.5923	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1305900			54504	3991	39671	39987							0.073714592090937
TLLCLPAACP	10	Unmodified	_TLLCLPAACP_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MULTI-MSMS	A375_MHC_IP_R2	2	502.1937255859375	2	501.261556	1000.50856	-0.58222	-0.00029184	-0.00075295	-3.7743E-07	-0.58297	-0.00029222	501.26156912374984	67.447	1.219	68.183	67.75	68.969	0.73631					57	23	4	0	0	0	0.6806	1	25514	25514		14.838	0	1	12268000			54505	1532	39672	39988	53182	53182					0.008325399505110909
TLLDALYEI	9	Unmodified	_TLLDALYEI_					0	0	0		ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	MULTI-SECPEP	A375_MHC_IP_R1	1	526.189208984375	2	525.789515	1049.56448	-0.73504	-0.00038648	0.40815	0.0002146	-0.32689	-0.00017187	525.7895863082417	133.33	0.45969	133.33	133.2	133.66	0					13	8	2	0	0	0	0.07754	1	51443	51443		74.423	16.951	1	6241600			54506	8486	39673	39989	53183	53183					0.041677876633457345
TLLDLGASPD	10	Unmodified	_TLLDLGASPD_					0	0	0		ENST00000414786.6_1_22:51113069-51169737:+|nuORF;nc|ENSG00000251322|Q9BYB0|SHANK3;ENSG00000251322|ENST00000262795|SHANK3;nc|ENSG00000251322|Q9BYB0-3|SHANK3	ENST00000414786.6_1_22:51113069-51169737:+|nuORF	ENST00000414786.6_1_22:51113069-51169737:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	502.6243591308594	2	501.261122	1000.50769	-0.75874	-0.00038033	0.64302	0.00032232	-0.11572	-5.8006E-05	501.2613121727181	68.173	0.76125	68.173	67.854	68.616	0					39	14	4	0	0	0	0.70496	1	24804	24804		10.074	0.6908	1	9470000			54507	11670	39674	39990	53184	53184					0.007457401068108993
TLLDLRLNQI	10	Unmodified	_TLLDLRLNQI_					0	0	0		ENSG00000213171|ENST00000368820|LINGO4	ENSG00000213171|ENST00000368820|LINGO4	ENSG00000213171|ENST00000368820|LINGO4	MULTI-MSMS	A375_MHC_IP_R1	1	400.26214599609375	3	400.243317	1197.70812	-0.46259	-0.00018515	-0.12487	-4.9979E-05	-0.58746	-0.00023513	400.5773575663892	19.243	0.24938	19.243	19.221	19.471	0					9	6	2	0	0	0	0.71361	1	4794	4794		5.7834	0	1	32066000			54508	9556	39675	39991	53185	53185					0.11717634494266349
TLLDPNEKYLL	11	Unmodified	_TLLDPNEKYLL_					0	0	0		ENST00000478009.1_1_1:202935608-202936333:-|nuORF;ENSG00000159348|ENST00000367249|CYB5R1	ENST00000478009.1_1_1:202935608-202936333:-|nuORF	ENST00000478009.1_1_1:202935608-202936333:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	660.266357421875	2	659.866285	1317.71802	-0.45012	-0.00029702	0.1273	8.4003E-05	-0.32282	-0.00021302	659.8662884107212	101.13	0.50751	101.13	100.94	101.45	0					16	9	3	0	0	0	0.18973	1	37189	37189		55.249	11.267	1	1811800			54509	6367	39676	39992	53186	53186					0.07186777709011949
TLLDPNEKYLL	11	Unmodified	_TLLDPNEKYLL_					0	0	0		ENST00000478009.1_1_1:202935608-202936333:-|nuORF;ENSG00000159348|ENST00000367249|CYB5R1	ENST00000478009.1_1_1:202935608-202936333:-|nuORF	ENST00000478009.1_1_1:202935608-202936333:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	660.2657470703125	2	659.866285	1317.71802	-0.6962	-0.0004594	0.51908	0.00034252	-0.17712	-0.00011687	659.8662328677913	100.23	0.40958	101	100.83	101.24	0.76277					11	7	2	0	0	0	0.23491	1	38046	38046		51.765	14.69	1	1196100			54510	6367	39676	39992	53187	53187					0.07186777709011949
TLLDRMVHL	9	Unmodified	_TLLDRMVHL_					0	0	0		ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	366.9422912597656	3	366.54271	1096.6063	0.15724	5.7636E-05	-0.079601	-2.9177E-05	0.077643	2.8459E-05	366.5425749501306	87.211	0.60953	87.211	86.933	87.542	0					30	11	3	0	0	0	0.48411	1	31996	31996		20.581	4.0151	1	2919800			54511	2257	39677	39993	53188	53188					0.061860648708716326
TLLDRMVHL	9	Unmodified	_TLLDRMVHL_					0	0	0		ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	366.9429016113281	3	366.54271	1096.6063	0.27054	9.9164E-05	0.021845	8.0071E-06	0.29238	0.00010717	366.54269623004643	86.282	0.81705	87.015	86.54	87.357	0.733					31	15	3	0	0	0	0.66474	1	32822	32822		10.151	2.2052	1	1848000			54512	2257	39677	39993	53189	53189					0.061860648708716326
TLLDSPYARV	10	Unmodified	_TLLDSPYARV_					0	0	0		ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	MULTI-SECPEP	A375_MHC_IP_R2	2	568.2103881835938	2	567.811313	1133.60807	-0.57441	-0.00032615	-1.105	-0.00062746	-1.6795	-0.00095361	567.8108631374733	72.224	0.50449	72.958	72.567	73.071	0.73421					11	7	2	0	0	0	0.75488	1	27435	27435		29.841	2.2118	1	1367500			54513	965	39678	39994	53190	53190					0.04661397160452907
TLLDSTWNL	9	Unmodified	_TLLDSTWNL_					0	0	0		nc|ENSG00000122642|O95302-2|FKBP9;ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9	nc|ENSG00000122642|O95302-2|FKBP9	nc|ENSG00000122642|O95302-2|FKBP9	MULTI-SECPEP	A375_MHC_IP_R2	2	532.2169799804688	2	531.776939	1061.53933	-0.64287	-0.00034187	0.74694	0.00039721	0.10407	5.5342E-05	531.7773445308219	126.72	0.30446	126.99	126.85	127.16	0.26593					7	5	2	0	0	0	0.75466	1	49562	49562		4.3292	0	1	7056900			54514	3795	39679	39995	53191	53191					0.011017328607522359
TLLDTRGLAP	10	Unmodified	_TLLDTRGLAP_					0	0	0			REV__ENST00000369501.2_1_6:88875621-88875864:-|nuORF	REV__ENST00000369501.2_1_6:88875621-88875864:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	353.9414367675781	3	352.873113	1055.59751	-0.20046	-7.0735E-05	-0.16578	-5.85E-05	-0.36624	-0.00012923	352.8730559825837	32.151	1.1184	32.151	31.667	32.785	0					62	21	4	0	0	0	0.70312	1	10272	10272		10.899	0.58372	1	28109000	+		54515	24010	39680	39996	53192	53192					0.07193414506059526
TLLECIGSGV	10	Unmodified	_TLLECIGSGV_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-SECPEP	A375_MHC_IP_R1	1	496.659912109375	2	496.260068	990.505582	-0.44462	-0.00022065	-0.047104	-2.3376E-05	-0.49172	-0.00024402	496.2600571903893	58.799	0.96655	58.799	58.481	59.448	0					33	18	2	0	0	0	0.60238	1	21122	21122		32.786	0	1	3272500			54516	14531	39681	39997	53193	53193					0.009949880973636027
TLLEDGTFKV	10	Unmodified	_TLLEDGTFKV_					0	0	0		ENST00000575002.5_1_16:4517092-4524613:-|nuORF;ENSG00000153406|ENST00000283429|NMRAL1	ENST00000575002.5_1_16:4517092-4524613:-|nuORF	ENST00000575002.5_1_16:4517092-4524613:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	562.2056884765625	2	561.805697	1121.59684	-0.54805	-0.0003079	0.41833	0.00023502	-0.12972	-7.2879E-05	561.805656445637	83.729	1.1137	83.729	83.38	84.494	0					70	21	5	0	0	0	0.31583	1	30599	30599		53.317	11.361	1	22002000			54517	6032	39682	39998	53194	53194					0.04090575066334168
TLLEDGTFKV	10	Unmodified	_TLLEDGTFKV_					0	0	0		ENST00000575002.5_1_16:4517092-4524613:-|nuORF;ENSG00000153406|ENST00000283429|NMRAL1	ENST00000575002.5_1_16:4517092-4524613:-|nuORF	ENST00000575002.5_1_16:4517092-4524613:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	562.205322265625	2	561.805697	1121.59684	-0.57762	-0.00032451	-0.31423	-0.00017653	-0.89185	-0.00050105	561.8054658748589	82.974	1.1641	83.714	83.294	84.458	0.73962					48	22	3	0	0	0	0.57412	1	31452	31452		43.982	14.9	1	20124000			54518	6032	39682	39998	53195	53195					0.04090575066334168
TLLEEIKAL	9	Unmodified	_TLLEEIKAL_					0	0	0		nc|ENSG00000167549|Q6QEF8|CORO6;ENSG00000167549|ENST00000388767|CORO6;nc|ENSG00000167549|Q6QEF8-4|CORO6;ENST00000469090.5_1_17:27942752-27944334:-|nuORF;nc|ENSG00000167549|Q6QEF8-3|CORO6;nc|ENSG00000167549|Q6QEF8-2|CORO6;ENST00000459686.5_1_17:27942752-27944279:-|nuORF;ENST00000579388.5_1_17:27942752-27944279:-|nuORF	nc|ENSG00000167549|Q6QEF8|CORO6	nc|ENSG00000167549|Q6QEF8|CORO6	MULTI-MSMS	A375_MHC_IP_R1	1	515.712646484375	2	515.313158	1028.61176	-0.33148	-0.00017082	-0.49474	-0.00025495	-0.82622	-0.00042576	515.3127941956847	106.69	0.81891	106.69	106.27	107.08	0					21	15	2	0	0	0	0.04447	1	39178	39178		66.457	0	1	1275100			54519	7194	39683	39999	53196	53196					0.098600669343341
TLLEFYED	8	Unmodified	_TLLEFYED_					0	0	0		nc|ENSG00000164307|Q9NZ08-2|ERAP1;ENSG00000164307|ENST00000443439|ERAP1	nc|ENSG00000164307|Q9NZ08-2|ERAP1	nc|ENSG00000164307|Q9NZ08-2|ERAP1	MULTI-MSMS	A375_MHC_IP_R1	1	515.6427612304688	2	515.242398	1028.47024	-0.79436	-0.00040929	0.77039	0.00039694	-0.023978	-1.2354E-05	515.2430654280723	134.1	0.35504	134.1	133.97	134.32	0					15	6	3	0	0	0	0.71451	1	51739	51739		30.225	7.4885	1	5304700			54520	6821	39684	40000	53197	53197					-0.04285351158796402
TLLEFYED	8	Unmodified	_TLLEFYED_					0	0	0		nc|ENSG00000164307|Q9NZ08-2|ERAP1;ENSG00000164307|ENST00000443439|ERAP1	nc|ENSG00000164307|Q9NZ08-2|ERAP1	nc|ENSG00000164307|Q9NZ08-2|ERAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	515.33154296875	2	515.242398	1028.47024	-0.67204	-0.00034626	1.7393	0.00089617	1.0673	0.00054991	515.2435877158548	133.97	0.3054	134.13	134.01	134.31	0.16487					11	5	3	0	0	0	0.84748	1	52698	52698		36.044	8.4154	1	8319100			54521	6821	39684	40000	53198	53198					-0.04285351158796402
TLLEKDYFL	9	Unmodified	_TLLEKDYFL_					0	0	0		ENST00000285124.12_1_18:9547789-9562973:-|nuORF;nc|ENSG00000154845|Q8TF05-2|PPP4R1;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000582594.5_1_18:9547789-9550464:-|nuORF	ENST00000285124.12_1_18:9547789-9562973:-|nuORF	ENST00000285124.12_1_18:9547789-9562973:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	571.71044921875	2	571.310615	1140.60668	-0.21955	-0.00012543	-0.42867	-0.00024491	-0.64823	-0.00037034	571.3101035407382	96.504	1.0656	96.504	96.223	97.288	0					51	20	3	0	0	0	0.048303	1	35436	35436		83.429	37.408	1	5661700			54522	6113	39685	40001	53199	53199					0.041997630717105494
TLLEKDYFL	9	Unmodified	_TLLEKDYFL_					0	0	0		ENST00000285124.12_1_18:9547789-9562973:-|nuORF;nc|ENSG00000154845|Q8TF05-2|PPP4R1;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000582594.5_1_18:9547789-9550464:-|nuORF	ENST00000285124.12_1_18:9547789-9562973:-|nuORF	ENST00000285124.12_1_18:9547789-9562973:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	571.8259887695312	2	571.310615	1140.60668	-0.1707	-9.7523E-05	-0.039692	-2.2676E-05	-0.21039	-0.0001202	571.3105097296607	95.663	1.3231	96.413	95.99	97.313	0.75045					53	25	3	0	0	0	0.035419	1	36370	36370		70.332	30.375	1	5860600			54523	6113	39685	40001	53200	53200					0.041997630717105494
TLLENSQRV	9	Unmodified	_TLLENSQRV_					0	0	0		nc|ENSG00000006282|Q8TB22-4|SPATA20;ENST00000503063.5_1_17:48625445-48628667:+|nuORF;nc|ENSG00000006282|Q8TB22-3|SPATA20;SPATA20|p.Q711Rfs*22|1|0.46|ENSG00000006282|chr17:50555252-50555252|T/-|frameshift_variant;nc|ENSG00000006282|Q8TB22|SPATA20;ENSG00000006282|ENST00000006658|SPATA20	nc|ENSG00000006282|Q8TB22-4|SPATA20	nc|ENSG00000006282|Q8TB22-4|SPATA20	MULTI-SECPEP	A375_MHC_IP_R1	1	530.6929931640625	2	530.293288	1058.57202	-0.76543	-0.0004059	1.6511	0.00087556	0.88567	0.00046966	530.2941181097219	36.857	0.91281	36.857	36.489	37.402	0					28	17	3	0	0	0	0.25548	1	12371	12371		61.602	13.853	1	3504100			54524	910	39686	40002	53201	53201					0.04507939983614051
TLLENSQRV	9	Unmodified	_TLLENSQRV_					0	0	0		nc|ENSG00000006282|Q8TB22-4|SPATA20;ENST00000503063.5_1_17:48625445-48628667:+|nuORF;nc|ENSG00000006282|Q8TB22-3|SPATA20;SPATA20|p.Q711Rfs*22|1|0.46|ENSG00000006282|chr17:50555252-50555252|T/-|frameshift_variant;nc|ENSG00000006282|Q8TB22|SPATA20;ENSG00000006282|ENST00000006658|SPATA20	nc|ENSG00000006282|Q8TB22-4|SPATA20	nc|ENSG00000006282|Q8TB22-4|SPATA20	MULTI-SECPEP	A375_MHC_IP_R2	2	530.6929321289062	2	530.293288	1058.57202	-0.75857	-0.00040227	1.9319	0.0010245	1.1733	0.0006222	530.2941680869661	36.047	0.86648	36.811	36.283	37.15	0.76338					28	16	3	0	0	0	0.21838	1	13072	13072		65.474	9.2966	1	4148600			54525	910	39686	40002	53202	53202					0.04507939983614051
TLLERDASL	9	Unmodified	_TLLERDASL_					0	0	0			REV__FHDC1|p.P545L|1|0.26|ENSG00000137460|chr4:152974925-152974925|C/T|missense_variant	REV__FHDC1|p.P545L|1|0.26|ENSG00000137460|chr4:152974925-152974925|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	508.68353271484375	2	509.282389	1016.55022	-0.66456	-0.00033845	-0.32064	-0.0001633	-0.9852	-0.00050175	509.2823921311357	69.81	0.45948	70.544	70.233	70.693	0.7342					12	8	2	0	0	0	0.58271	1	26465	26465		26.884	2.8631	1	1246200	+		54526	26631	39687	40003	53203	53203					0.04261135235049096
TLLESIQHV	9	Unmodified	_TLLESIQHV_					0	0	0		HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant;ENSG00000128731|ENST00000261609|HERC2	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	520.6923828125	2	520.292756	1038.57096	-0.54097	-0.00028147	0.20926	0.00010888	-0.33172	-0.00017259	520.2928338945195	75.89	0.90741	75.89	75.564	76.471	0					45	17	3	0	0	0	0.27742	1	27616	27616		43.772	7.6454	1	15119000			54527	14109	39688	40004	53204	53204					0.053217256147036096
TLLESIQHV	9	Unmodified	_TLLESIQHV_					0	0	0		HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant;ENSG00000128731|ENST00000261609|HERC2	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	520.6923828125	2	520.292756	1038.57096	-0.69846	-0.0003634	0.07286	3.7908E-05	-0.6256	-0.0003255	520.292779989917	75.058	1.0682	75.795	75.365	76.433	0.73751					45	20	4	0	0	0	0.24324	1	28421	28421		45.7	7.7256	1	9493500			54528	14109	39688	40004	53205	53205					0.053217256147036096
TLLFGALTSL	10	Unmodified	_TLLFGALTSL_					0	0	0		ENSG00000174939|ENST00000308748|ASPHD1	ENSG00000174939|ENST00000308748|ASPHD1	ENSG00000174939|ENST00000308748|ASPHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	518.7079467773438	2	518.307875	1034.6012	-0.77358	-0.00040095	-0.36549	-0.00018944	-1.1391	-0.00059039	518.3075521422725	90.867	0.6606	90.867	90.488	91.148	0					26	12	3	0	0	0	0.52461	1	33374	33374		29.082	5.061	1	2152800			54529	7915	39689	40005	53206	53206					0.08528084279919312
TLLFIFICAF	10	Unmodified	_TLLFIFICAF_					0	0	0		ENST00000588155.1_1_18:44272124-44336471:-|nuORF;ENSG00000101638|ENST00000315087|ST8SIA5;nc|ENSG00000101638|O15466-2|ST8SIA5	ENST00000588155.1_1_18:44272124-44336471:-|nuORF	ENST00000588155.1_1_18:44272124-44336471:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	396.6164855957031	3	396.555956	1186.64604	-0.11716	-4.6462E-05	0.037176	1.4743E-05	-0.079988	-3.172E-05	396.5560195480812	24.878	0.35534	24.878	24.749	25.104	0					8	6	2	0	0	0	0.71266	1	7116	7116		6.6304	0	1	4733000			54530	2315	39690	40006	53207	53207					0.06018191821567598
TLLGHLDYI	9	Unmodified	_TLLGHLDYI_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA;ENST00000541366.1_1_1:160303391-160312960:-|nuORF	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	A375_MHC_IP_R1	1	523.189697265625	2	522.78985	1043.56515	-0.41205	-0.00021542	0.35967	0.00018803	-0.052384	-2.7386E-05	522.7899692350493	97.415	1.065	97.415	97.036	98.101	0					37	20	2	0	0	0	0.012104	1	35738	35738		103.75	55.402	1	9563800			54531	3768	39691	40007	53208	53208					0.04510627103036313
TLLGHLDYI	9	Unmodified	_TLLGHLDYI_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA;ENST00000541366.1_1_1:160303391-160312960:-|nuORF	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1901245117188	2	522.78985	1043.56515	-0.60994	-0.00031887	1.9988	0.0010449	1.3888	0.00072607	522.7900102822798	96.339	1.1132	97.089	96.653	97.766	0.75045					50	21	3	0	0	0	0.011178	1	36579	36579		115.69	47.611	1	8862100			54532	3768	39691	40007	53209	53209					0.04510627103036313
TLLHRVILS	9	Unmodified	_TLLHRVILS_					0	0	0		ENST00000261247.13_1_14:59970910-59971024:+|nuORF	ENST00000261247.13_1_14:59970910-59971024:+|nuORF	ENST00000261247.13_1_14:59970910-59971024:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	526.7211303710938	2	526.334759	1050.65496	-0.22019	-0.00011589	-0.55859	-0.00029401	-0.77878	-0.0004099	526.3341553771634	68.994	0.25312	68.994	68.92	69.173	0					6	4	2	0	0	0	0.67483	1	25034	25034		6.2058	0	1	702150			54533	10277	39692	40008	53210	53210					0.13166301502269562
TLLIPRQEKQQ	11	Unmodified	_TLLIPRQEKQQ_					0	0	0		ENST00000520635.5_1_8:82626199-82627143:-|nuORF	ENST00000520635.5_1_8:82626199-82627143:-|nuORF	ENST00000520635.5_1_8:82626199-82627143:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	677.7952880859375	2	677.396076	1352.7776	-0.98741	-0.00066887	-0.59228	-0.00040121	-1.5797	-0.0010701	677.3954398327375	143.21	0.80188	143.21	142.74	143.54	0					28	15	3	0	0	0	0.73828	1	54903	54903		2.4985	0	1	2325500			54534	12998	39693	40009	53211	53211					0.1153209344302013
TLLISKLSV	9	Unmodified	_TLLISKLSV_					0	0	0		ENST00000423222.5_1_1:211599560-211605712:+|nuORF	ENST00000423222.5_1_1:211599560-211605712:+|nuORF	ENST00000423222.5_1_1:211599560-211605712:+|nuORF	MSMS	A375_MHC_IP_R1	1	487.35821533203125	2	487.318243	972.621933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.99	1	134.99	134.49	135.49	0								0	0	0	0.1535	1	52054	52054		15.847	3.3156	1				54535	11757	39694	40010	53212	53212					0.13452674659561126
TLLKDRVKL	9	Unmodified	_TLLKDRVKL_					0	0	0		ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96	ENSG00000153283|ENST00000352690|CD96	ENSG00000153283|ENST00000352690|CD96	MULTI-MSMS	A375_MHC_IP_R1	1	362.97308349609375	3	362.572886	1084.69683	0.10438	3.7846E-05	0.054761	1.9855E-05	0.15914	5.77E-05	362.57286365502625	37.78	0.45963	37.78	37.556	38.016	0					18	8	3	0	0	0	0.23226	1	12794	12794		35.612	3.5748	1	3021400			54536	6023	39695	40011	53213	53213					0.1578685719080113
TLLKDRVKL	9	Unmodified	_TLLKDRVKL_					0	0	0		ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96	ENSG00000153283|ENST00000352690|CD96	ENSG00000153283|ENST00000352690|CD96	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	362.572886	1084.69683	-0.58796	-0.00021318	-0.019788	-7.1747E-06	-0.60775	-0.00022035	362.5728628347873	36.683	0.45825	37.454	37.258	37.716	0.7709	-0.16331	-3.1279E-05	NaN	35.612	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1846800			54537	6023	39695	40011							0.1578685719080113
TLLKKVWKV	9	Unmodified	_TLLKKVWKV_					0	0	0		nc|ENSG00000152359|Q8NA72-2|POC5;nc|ENSG00000152359|Q8NA72-3|POC5;ENSG00000152359|ENST00000428202|POC5	nc|ENSG00000152359|Q8NA72-2|POC5	nc|ENSG00000152359|Q8NA72-2|POC5	MULTI-SECPEP	A375_MHC_IP_R1	1	372.6497497558594	3	372.249743	1113.7274	0.23521	8.7558E-05	0.04347	1.6182E-05	0.27868	0.00010374	372.24968534727924	46.519	1.0694	46.519	46.245	47.315	0					55	20	4	0	0	0	0.31606	1	16299	16299		30.703	10.289	1	13700000			54538	5959	39696	40012	53214	53214					0.17508635575859444
TLLKKVWKV	9	Unmodified	_TLLKKVWKV_					0	0	0		nc|ENSG00000152359|Q8NA72-2|POC5;nc|ENSG00000152359|Q8NA72-3|POC5;ENSG00000152359|ENST00000428202|POC5	nc|ENSG00000152359|Q8NA72-2|POC5	nc|ENSG00000152359|Q8NA72-2|POC5	MULTI-MSMS	A375_MHC_IP_R2	2	372.6495361328125	3	372.249743	1113.7274	0.40977	0.00015254	-0.34392	-0.00012802	0.065846	2.4511E-05	372.2495427976509	45.359	1.2115	46.124	45.746	46.957	0.76519					55	23	4	0	0	0	0.16286	2	16911	16911;17041		40.725	25.476	1	16675000			54539	5959	39696	40012	53215;53216	53215					0.17508635575859444
TLLKKVWKV	9	Unmodified	_TLLKKVWKV_					0	0	0		nc|ENSG00000152359|Q8NA72-2|POC5;nc|ENSG00000152359|Q8NA72-3|POC5;ENSG00000152359|ENST00000428202|POC5	nc|ENSG00000152359|Q8NA72-2|POC5	nc|ENSG00000152359|Q8NA72-2|POC5	MULTI-SECPEP	A375_MHC_IP_R2	2	557.716064453125	2	557.870977	1113.7274	-0.79781	-0.00044507	-0.12167	-6.7875E-05	-0.91948	-0.00051295	557.8709679333639	45.327	0.35569	46.092	45.947	46.303	0.76519					10	6	2	0	0	0	0.71341	1	16940	16940		8.7454	0	1	1608700			54540	5959	39696	40012	53217	53217					0.17508635575859444
TLLKQLKEA	9	Unmodified	_TLLKQLKEA_					0	0	0		nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;nc|ENSG00000070669|P08243-3|ASNS	nc|ENSG00000070669|P08243-2|ASNS	nc|ENSG00000070669|P08243-2|ASNS	MULTI-SECPEP	A375_MHC_IP_R1	1	522.7261352539062	2	522.326599	1042.63865	-0.36437	-0.00019032	-0.41514	-0.00021684	-0.77951	-0.00040716	522.3263100692608	35.92	0.61079	35.92	35.625	36.236	0					24	11	3	0	0	0	0.22619	1	11988	11988		44.392	19.51	1	3611700			54541	1496	39697	40013	53218	53218					0.11903175545535305
TLLKRPQLW	9	Unmodified	_TLLKRPQLW_					0	0	0			REV__CYP4B1|p.H137P|1|0.17|ENSG00000142973|chr1:46812538-46812538|A/C|missense_variant	REV__CYP4B1|p.H137P|1|0.17|ENSG00000142973|chr1:46812538-46812538|A/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	578.2557983398438	2	577.855858	1153.69716	-0.18762	-0.00010842	-0.76247	-0.0004406	-0.95009	-0.00054902	577.855329129206	73.696	0.40613	73.696	73.437	73.843	0					11	7	2	0	0	0	0.67483	1	26883	26883		20.454	6.5476	1	1429700	+		54542	15955	39698	40014	53219	53219					0.12646276910641063
TLLKTIIKV	9	Unmodified	_TLLKTIIKV_					0	0	0		ENSG00000048342|ENST00000424120|CC2D2A;nc|ENSG00000048342|Q9P2K1-2|CC2D2A;ENST00000513811.5_1_4:15471657-15545375:+|nuORF	ENSG00000048342|ENST00000424120|CC2D2A	ENSG00000048342|ENST00000424120|CC2D2A	MULTI-SECPEP	A375_MHC_IP_R2	2	515.2568969726562	2	514.857535	1027.70052	-0.68295	-0.00035162	0.055098	2.8368E-05	-0.62785	-0.00032326	514.8575428470822	69.728	0.61013	70.462	70.233	70.844	0.73421					20	11	2	0	0	0	0.26374	1	26418	26418		47.732	28.37	1	2671000			54543	1211	39699	40015	53220	53220					0.18777526964663593
TLLLAWAQLA	10	Unmodified	_TLLLAWAQLA_					0	0	0			REV__ENST00000483071.1_1_3:50326655-50327355:-|nuORF	REV__ENST00000483071.1_1_3:50326655-50327355:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	367.6083679199219	3	367.221853	1098.64373	-0.069144	-2.5391E-05	-0.062372	-2.2904E-05	-0.13152	-4.8296E-05	367.22165223832565	26.466	0.5072	26.466	26.271	26.779	0					28	9	4	0	0	0	0.7086	1	8005	8005		8.4443	1.4072	1	11503000	+		54544	22657	39700	40016	53221	53221					0.09835479408138781
TLLLFWLREW	10	Unmodified	_TLLLFWLREW_					0	0	0			REV__ENST00000528031.1_1_11:75167699-75188792:-|nuORF	REV__ENST00000528031.1_1_11:75167699-75188792:-|nuORF	MSMS	A375_MHC_IP_R1	1	459.65985107421875	3	459.595691	1375.76524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.73	1	133.73	133.23	134.23	0								0	0	0	0.15588	1	51573	51573		1.7423	0.52744	1		+		54545	20085	39701	40017	53222	53222					0.09239101770617708
TLLLRPRPPG	10	Unmodified	_TLLLRPRPPG_					0	0	0			REV__ENST00000468408.5_1_2:173940647-174034584:+|nuORF	REV__ENST00000468408.5_1_2:173940647-174034584:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	374.2639465332031	3	373.904747	1118.69241	0.34236	0.00012801	-0.1677	-6.2705E-05	0.17465	6.5304E-05	373.90473355053194	40.304	0.61066	40.304	39.999	40.609	0					18	11	2	0	0	0	0.71881	1	13745	13745		3.8763	1.1411	1	6164000	+		54546	25082	39702	40018	53223	53223					0.13781392767873513
TLLLSRKC	8	Unmodified	_TLLLSRKC_					0	0	0		ENST00000435620.6_1_3:197803775-197807401:-|nuORF	ENST00000435620.6_1_3:197803775-197807401:-|nuORF	ENST00000435620.6_1_3:197803775-197807401:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	933.5460205078125	1	933.554999	932.547722	-0.24493	-0.00022865	3.098	0.0028921	2.853	0.0026635	933.5582028965998	129.89	0.15021	129.89	129.8	129.95	0					4	2	2	0	0	0	0.7766	1	49993	49993		7.2892	2.0586	1	1702900			54547	11914	39703	40019	53224	53224					0.07875008296389296
TLLNIREFI	9	Unmodified	_TLLNIREFI_					0	0	0		ENST00000510175.5_1_4:155055-155787:+|nuORF	ENST00000510175.5_1_4:155055-155787:+|nuORF	ENST00000510175.5_1_4:155055-155787:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	373.95703125	3	373.557125	1117.64954	-0.059468	-2.2215E-05	0.11701	4.3708E-05	0.057538	2.1494E-05	373.55715257349016	29.711	1.011	30.41	30.134	31.145	0.69872					28	19	2	0	0	0	0.7713	1	10408	10408		12.175	0.65687	1	5398200			54548	12896	39704	40020	53225	53225					0.09542577919796713
TLLNVIKSV	9	Unmodified	_TLLNVIKSV_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENST00000538984.1_1_12:26564247-26572125:-|nuORF;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;ENSG00000123104|ENST00000381340|ITPR2	nc|ENSG00000150995|Q14643-4|ITPR1;ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-SECPEP	A375_MHC_IP_R1	1	494.21575927734375	2	493.815867	985.617182	-0.45834	-0.00022633	0.19947	9.85E-05	-0.25887	-0.00012783	493.81591732864126	89.91	1.4191	89.91	89.426	90.845	0					60	27	3	0	0	0	0.011308	1	33001	33001		107.1	28.372	1	10737000			54549	3825;5872	39705	40021	53226	53226					0.12379790516808953
TLLNVIKSV	9	Unmodified	_TLLNVIKSV_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENST00000538984.1_1_12:26564247-26572125:-|nuORF;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;ENSG00000123104|ENST00000381340|ITPR2	nc|ENSG00000150995|Q14643-4|ITPR1;ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-SECPEP	A375_MHC_IP_R2	2	494.21551513671875	2	493.815867	985.617182	-0.41778	-0.00020631	-0.39738	-0.00019623	-0.81516	-0.00040254	493.815694135266	88.826	1.826	89.558	89.178	91.004	0.7318					73	35	3	0	0	0	0.013536	1	33787	33787		121.35	69.716	1	11361000			54550	3825;5872	39705	40021	53227	53227					0.12379790516808953
TLLPHGPSSGP	11	Unmodified	_TLLPHGPSSGP_					0	0	0			REV__ENST00000366983.5_1_1:212792493-212792673:+|nuORF	REV__ENST00000366983.5_1_1:212792493-212792673:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	532.1842041015625	2	531.782556	1061.55056	-0.65029	-0.00034581	-1.2751	-0.0006781	-1.9254	-0.0010239	531.7828642388066	70.662	0.6084	71.397	70.895	71.503	0.73421					20	11	2	0	0	0	0.69231	1	26684	26684		16.149	1.3108	1	3130800	+		54551	23947	39706	40022	53228	53228					0.022245549549325006
TLLPLRVFL	9	Unmodified	_TLLPLRVFL_					0	0	0		ENSG00000169762|ENST00000405303|TAPT1;nc|ENSG00000169762|Q6NXT6-2|TAPT1	ENSG00000169762|ENST00000405303|TAPT1	ENSG00000169762|ENST00000405303|TAPT1	MULTI-MSMS	A375_MHC_IP_R1	1	536.7499389648438	2	536.349877	1070.6852	-0.53478	-0.00028683	0.47817	0.00025647	-0.056604	-3.0359E-05	536.350037043647	128.15	0.91342	128.15	127.97	128.89	0					26	17	4	0	0	0	0.04447	1	49197	49197		66.457	16.524	1	36815000			54552	7437	39707	40023	53229	53229					0.15268660167453163
TLLPLRVFL	9	Unmodified	_TLLPLRVFL_					0	0	0		ENSG00000169762|ENST00000405303|TAPT1;nc|ENSG00000169762|Q6NXT6-2|TAPT1	ENSG00000169762|ENST00000405303|TAPT1	ENSG00000169762|ENST00000405303|TAPT1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	536.349877	1070.6852	-0.91613	-0.00049137	0.8303	0.00044533	-0.08583	-4.6035E-05	536.3502374675946	127.83	0.40465	128.09	127.97	128.37	0.26593	-0.028977	7.3519E-05	NaN	66.457	19	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29154000			54553	7437	39707	40023							0.15268660167453163
TLLRLLLRIV	10	Unmodified	_TLLRLLLRIV_					0	0	0		nc|ENSG00000204147|P0C7U1|ASAH2B	nc|ENSG00000204147|P0C7U1|ASAH2B	nc|ENSG00000204147|P0C7U1|ASAH2B	MSMS	A375_MHC_IP_R1	1	605.469970703125	2	605.423908	1208.83326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.168	1	88.168	87.668	88.668	0								0	0	0	0.15591	1	32363	32363		1.6526	0	1				54554	14857	39708	40024	53230	53230					0.23719971421314767
TLLRLLLRLL	10	Unmodified	_TLLRLLLRLL_					0	0	0		ENSG00000183921|ENST00000602312|SDR42E2	ENSG00000183921|ENST00000602312|SDR42E2	ENSG00000183921|ENST00000602312|SDR42E2	MSMS	A375_MHC_IP_R2	2	612.5806884765625	2	612.431733	1222.84891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.849	1	91.583	91.083	92.083	0.7345								0	0	0	0.1552	1	34565	34565		3.9444	3.9444	1				54555	8543	39709	40025	53231	53231					0.24640257938381183
TLLRLLYEA	9	Unmodified	_TLLRLLYEA_					0	0	0		nc|ENSG00000149100|Q7L2H7-2|EIF3M;ENST00000524711.5_1_11:32608681-32615496:+|nuORF;ENSG00000149100|ENST00000531120|EIF3M	nc|ENSG00000149100|Q7L2H7-2|EIF3M;ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	MULTI-MSMS	A375_MHC_IP_R1	1	547.2277221679688	2	546.326599	1090.63865	-0.328	-0.00017919	-0.13813	-7.5466E-05	-0.46613	-0.00025466	546.3264006347895	106.77	1.7911	106.77	106.11	107.9	0					84	34	3	0	0	0	0.10518	1	39131	39131		53.404	29.383	1	11551000			54556	5782;14672	39710	40026	53232	53232					0.09695175545539314
TLLRLLYEA	9	Unmodified	_TLLRLLYEA_					0	0	0		nc|ENSG00000149100|Q7L2H7-2|EIF3M;ENST00000524711.5_1_11:32608681-32615496:+|nuORF;ENSG00000149100|ENST00000531120|EIF3M	nc|ENSG00000149100|Q7L2H7-2|EIF3M;ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	MULTI-SECPEP	A375_MHC_IP_R2	2	546.726318359375	2	546.326599	1090.63865	-0.79421	-0.0004339	0.35526	0.00019409	-0.43895	-0.00023981	546.3265182164332	105.64	2.137	106.4	105.66	107.8	0.75977					103	41	3	0	0	0	0.2733	1	39916	39916		69.338	38.07	1	9842500			54557	5782;14672	39710	40026	53233	53233					0.09695175545539314
TLLRLRHPL	9	Unmodified	_TLLRLRHPL_					0	0	0		ENSG00000119431|ENST00000374180|HDHD3	ENSG00000119431|ENST00000374180|HDHD3	ENSG00000119431|ENST00000374180|HDHD3	MULTI-SECPEP	A375_MHC_IP_R2	2	560.1412963867188	2	559.861475	1117.7084	-0.46621	-0.00026101	3.8362	0.0021478	3.37	0.0018867	560.3642099555192	143	0.35416	143.03	142.79	143.14	0.030731					11	6	2	0	0	0	0.77834	1	55849	55849		0.52476	0	1	1364800			54558	3594	39711	40027	53234	53234					0.15425099004801268
TLLRWTRASL	10	Unmodified	_TLLRWTRASL_					0	0	0			REV__ENSG00000188820|ENST00000368605|CALHM6	REV__ENSG00000188820|ENST00000368605|CALHM6	MULTI-MSMS	A375_MHC_IP_R1	1	406.6434326171875	3	406.24354	1215.70879	-0.2043	-8.2994E-05	-0.14079	-5.7196E-05	-0.34509	-0.00014019	406.2435072341268	62.575	1.3824	62.575	61.994	63.377	0					47	26	4	0	0	0	0.58757	1	22557	22557		21.799	8.9269	1	5361100	+		54559	22116	39712	40028	53235	53235					0.10956473933993038
TLLSKSNL	8	Unmodified	_TLLSKSNL_					0	0	0		nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;ENSG00000156675|ENST00000330843|RAB11FIP1	nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1	nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1	MULTI-MSMS	A375_MHC_IP_R1	1	438.6631164550781	2	438.263468	874.512382	-0.19617	-8.5976E-05	0.31453	0.00013785	0.11836	5.1871E-05	438.26340171588186	58.9	0.61088	58.9	58.481	59.092	0					17	11	2	0	0	0	0.33238	1	21187	21187		56.177	6.244	1	1285600			54560	6204	39713	40029	53236	53236					0.07010669040232642
TLLSNIQGV	9	Unmodified	_TLLSNIQGV_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	A375_MHC_IP_R1	1	473.1741638183594	2	472.7742	943.533846	-0.54425	-0.00025731	0.050251	2.3757E-05	-0.494	-0.00023355	472.77416989361944	94.277	1.5244	94.277	93.84	95.364	0					80	29	4	0	0	0	0.0011619	1	34782	34782		152.41	21.145	1	44984000			54561	5711	39714	40030	53237	53237					0.05982054068965681
TLLSNIQGV	9	Unmodified	_TLLSNIQGV_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-SECPEP	A375_MHC_IP_R1	1	472.64788818359375	2	472.7742	943.533846	-0.51099	-0.00024158	0.13607	6.4331E-05	-0.37491	-0.00017725	472.77432194956634	95.44	0.70662	95.44	95.211	95.917	0					18	13	2	0	0	0	0.47368	1	35069	35069		34.102	0	1	900940			54562	5711	39714	40030	53238	53238					0.05982054068965681
TLLSNIQGV	9	Unmodified	_TLLSNIQGV_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	A375_MHC_IP_R2	2	473.173828125	2	472.7742	943.533846	-0.43643	-0.00020633	0.30601	0.00014467	-0.13042	-6.1661E-05	472.7742783219713	93.443	1.6239	94.188	93.802	95.426	0.74473					86	31	5	0	0	0	0.0011619	1	35672	35672		152.41	21.145	1	50808000			54563	5711	39714	40030	53239	53239					0.05982054068965681
TLLSRVRSS	9	Unmodified	_TLLSRVRSS_					0	0	0		ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	MULTI-SECPEP	A375_MHC_IP_R1	1	509.6952209472656	2	509.803823	1017.59309	-0.6871	-0.00035028	0.11749	5.9897E-05	-0.56961	-0.00029039	509.80377016167245	133.05	0.3588	133.05	132.89	133.25	0					10	6	2	0	0	0	0.73363	1	51272	51272		10.824	6.8795	1	5289600			54564	9347	39715	40031	53240	53240					0.08499950083148633
TLLSRVRSS	9	Unmodified	_TLLSRVRSS_					0	0	0		ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	MULTI-MSMS	A375_MHC_IP_R2	2	510.2036437988281	2	509.803823	1017.59309	-0.57338	-0.00029231	-0.2187	-0.00011149	-0.79208	-0.00040381	509.80366545678345	115.98	0.91335	116.67	116.04	116.95	0.68999					25	17	2	0	0	0	0.6656	1	43661	43661		10.074	10.074	1	5324400			54565	9347	39715	40031	53241	53241					0.08499950083148633
TLLSRVRSS	9	Unmodified	_TLLSRVRSS_					0	0	0		ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	MULTI-MSMS	A375_MHC_IP_R2	2	510.2589111328125	2	509.803823	1017.59309	-0.66809	-0.00034059	0.13686	6.9772E-05	-0.53123	-0.00027082	509.8037821582553	118.45	2.1323	119.06	118.44	120.57	0.60909					82	41	3	0	0	0	0.73804	1	45050	45050		3.5965	0	1	44292000			54566	9347	39715	40031	53242	53242					0.08499950083148633
TLLSWSKKR	9	Unmodified	_TLLSWSKKR_					0	0	0		ENSG00000127989|ENST00000351870|MTERF1	ENSG00000127989|ENST00000351870|MTERF1	ENSG00000127989|ENST00000351870|MTERF1	MULTI-SECPEP	A375_MHC_IP_R2	2	559.1874389648438	2	559.837665	1117.66078	-0.55013	-0.00030799	-2.6694	-0.0014944	-3.2195	-0.0018024	560.3372877871426	79.307	0.15179	80.051	79.946	80.098	0.74474					4	2	2	0	0	0	0.62767	1	30085	30085		23.148	2.6948	1	570220			54567	4115	39716	40032	53243	53243					0.1066540001395424
TLLTAIVKL	9	Unmodified	_TLLTAIVKL_					0	0	0		nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	MULTI-SECPEP	A375_MHC_IP_R1	1	486.728759765625	2	486.328611	970.642668	0.25423	0.00012364	-0.17957	-8.733E-05	0.074659	3.6309E-05	486.3284880447305	114.24	0.76463	114.24	114.01	114.77	0					23	14	2	0	0	0	0.0065039	1	41883	41883		155.03	62.535	1	4730900			54568	909	39717	40033	53244	53244					0.15617265039236372
TLLTAIVKL	9	Unmodified	_TLLTAIVKL_					0	0	0		nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	MULTI-SECPEP	A375_MHC_IP_R2	2	486.728759765625	2	486.328611	970.642668	-0.37934	-0.00018448	0.17385	8.4547E-05	-0.2055	-9.9938E-05	486.3287911736095	113.09	0.86602	113.8	113.62	114.48	0.70985					21	16	2	0	0	0	0.0065039	1	42661	42661		129.77	54.011	1	3455600			54569	909	39717	40033	53245	53245					0.15617265039236372
TLLTCCCCI	9	Unmodified	_TLLTCCCCI_					0	0	0			REV__nc|ENSG00000124067|Q9UP95-4|SLC12A4	REV__nc|ENSG00000124067|Q9UP95-4|SLC12A4	MSMS	A375_MHC_IP_R1	1	486.6973876953125	2	486.704702	971.394851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.295	1	73.295	72.795	73.795	0								0	0	0	0.15486	1	26682	26682		12.532	1.4171	1		+		54570	18268	39718	40034	53246	53246					-0.09199014478394929
TLLTDPPTA	9	Unmodified	_TLLTDPPTA_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-MSMS	A375_MHC_IP_R1	1	464.6493225097656	2	464.752933	927.491313	-0.20897	-9.7119E-05	-0.91548	-0.00042547	-1.1244	-0.00052259	464.7529318683106	68.658	0.60709	68.658	68.412	69.02	0					18	11	2	0	0	0	0.030038	2	24953	24953;24985		74.929	31.071	1	1620800			54571	6434	39719	40035	53247;53248	53247					0.024666589407047468
TLLVVVPKL	9	Unmodified	_TLLVVVPKL_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1;ENST00000521671.1_1_8:104064982-104075474:+|nuORF	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-MSMS	A375_MHC_IP_R2	2	491.7384948730469	2	491.338978	980.663404	-0.58846	-0.00028913	-0.15659	-7.6941E-05	-0.74505	-0.00036607	491.33898399563805	106.66	0.50877	107.42	107.14	107.65	0.75977					16	9	2	0	0	0	0.32092	1	40343	40343		29.082	13.234	1	1619600			54572	6127	39720	40036	53249	53249					0.17229855418895568
TLLWDREV	8	Unmodified	_TLLWDREV_					0	0	0		nc|ENSG00000162129|Q9H078-5|CLPB;nc|ENSG00000162129|Q9H078-3|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB;ENST00000538021.5_2_11:72004413-72018253:-|nuORF	nc|ENSG00000162129|Q9H078-5|CLPB	nc|ENSG00000162129|Q9H078-5|CLPB	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1110229492188	2	516.279649	1030.54475	-0.6405	-0.00033068	0.41264	0.00021304	-0.22787	-0.00011764	516.2797626724937	65.367	0.40724	65.367	65.055	65.462	0					10	7	2	0	0	0	0.97021	1	23620	23620		15.847	0	1	995960			54573	6509	39721	40037	53250	53250					0.030694564432451443
TLLWFLLL	8	Unmodified	_TLLWFLLL_					0	0	0		ENSG00000166884|ENST00000300127|OR4D6	ENSG00000166884|ENST00000300127|OR4D6	ENSG00000166884|ENST00000300127|OR4D6	MULTI-SECPEP	A375_MHC_IP_R2	2	509.1661682128906	2	509.820421	1017.62629	-0.82687	-0.00042155	1.6463	0.00083932	0.81943	0.00041776	510.32036655700045	81.538	0.15136	82.281	82.179	82.33	0.74293					4	2	2	0	0	0	0.96296	1	30980	30980		5.7604	0	1	467700			54574	7125	39722	40038	53251	53251					0.11818183873151611
TLLWHCSL	8	Unmodified	_TLLWHCSL_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	A375_MHC_IP_R2	2	486.6971740722656	2	486.752213	971.489873	-0.60631	-0.00029512	0.070486	3.4309E-05	-0.53582	-0.00026081	486.75209414522084	67.325	0.50728	68.061	67.801	68.308	0.73631					12	9	2	0	0	0	0.94479	1	25424	25424		13.508	13.508	1	1185500			54575	9866	39723	40039	53252	53252					0.0029874637097009327
TLLWTLIKLP	10	Unmodified	_TLLWTLIKLP_					0	0	0			REV__ENST00000284320.5_1_3:100092485-100093986:-|nuORF	REV__ENST00000284320.5_1_3:100092485-100093986:-|nuORF	MSMS	A375_MHC_IP_R1	1	599.3745727539062	2	599.383917	1196.75328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.564	1	85.564	85.064	86.064	0								0	0	0	0.15531	1	31359	31359		3.5965	0.60125	1		+		54576	23334	39724	40040	53253	53253					0.16277485027467264
TLLYWGMP	8	Unmodified	_TLLYWGMP_					0	0	0		ENST00000496358.1_1_7:99686670-99688376:+|nuORF	ENST00000496358.1_1_7:99686670-99688376:+|nuORF	ENST00000496358.1_1_7:99686670-99688376:+|nuORF	MSMS	A375_MHC_IP_R2	2	490.7013244628906	2	490.749139	979.483725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.448	1	93.187	92.687	93.687	0.73902								0	0	0	0.16876	1	35158	35158		10.183	0	1				54577	12723	39725	40041	53254	53254					-0.006837718605538612
TLMAEMHVV	9	Unmodified	_TLMAEMHVV_					0	0	0		nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	MULTI-MSMS	A375_MHC_IP_R1	1	515.6627197265625	2	515.756638	1029.49872	-0.54878	-0.00028304	0.86477	0.00044601	0.31599	0.00016297	515.7563718659833	75.718	0.60275	75.718	75.464	76.067	0					14	11	2	0	0	0	0.58047	1	27548	27548		15.847	0.078963	1	1452800			54578	7623	39726	40042	53255	53255					-0.01484648054884019
TLMAHTAEI	9	Unmodified	_TLMAHTAEI_					0	0	0		ENSG00000158169|ENST00000289081|FANCC	ENSG00000158169|ENST00000289081|FANCC	ENSG00000158169|ENST00000289081|FANCC	MULTI-MSMS	A375_MHC_IP_R1	1	493.66876220703125	2	493.75241	985.490267	-0.40768	-0.00020129	-0.068461	-3.3803E-05	-0.47614	-0.0002351	493.75238760532187	58.327	0.35427	58.327	58.177	58.531	0					9	6	2	0	0	0	0.35581	1	20991	20991		26.884	1.4843	1	902580			54579	6292	39727	40043	53256	53256					-0.0030587869983946803
TLMEEVLLL	9	Oxidation (M)	_TLM(Oxidation (M))EEVLLL_		TLM(1)EEVLLL		TLM(55)EEVLLL	0	0	1		ENSG00000143457|ENST00000271732|GOLPH3L;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;ENSG00000113384|ENST00000265070|GOLPH3	ENSG00000143457|ENST00000271732|GOLPH3L	ENSG00000143457|ENST00000271732|GOLPH3L	MULTI-MSMS	A375_MHC_IP_R1	1	539.2242431640625	2	538.799026	1075.5835	-0.86015	-0.00046345	1.0681	0.00057548	0.20793	0.00011203	538.7996149797749	129.52	0.70906	129.52	129.25	129.95	0					22	13	3	0	0	0	0.077132	1	49853	49853		54.774	6.4277	1	4159800			54580	5394	39728	40044	53257	53257		290			0.0487300096274339
TLMEEVLLL	9	Oxidation (M)	_TLM(Oxidation (M))EEVLLL_		TLM(1)EEVLLL		TLM(55)EEVLLL	0	0	1		ENSG00000143457|ENST00000271732|GOLPH3L;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;ENSG00000113384|ENST00000265070|GOLPH3	ENSG00000143457|ENST00000271732|GOLPH3L	ENSG00000143457|ENST00000271732|GOLPH3L	MULTI-MSMS	A375_MHC_IP_R2	2	539.2244262695312	2	538.799026	1075.5835	-0.90191	-0.00048595	0.28469	0.00015339	-0.61723	-0.00033256	538.7993385048775	129.28	0.60449	129.52	129.31	129.92	0.23946					20	11	2	0	0	0	0.077132	1	50824	50824		54.774	6.4277	1	3416700			54581	5394	39728	40044	53258	53258		290			0.0487300096274339
TLMEEVLLL	9	Unmodified	_TLMEEVLLL_					0	0	0		ENSG00000143457|ENST00000271732|GOLPH3L;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;ENSG00000113384|ENST00000265070|GOLPH3	ENSG00000143457|ENST00000271732|GOLPH3L	ENSG00000143457|ENST00000271732|GOLPH3L	MULTI-SECPEP	A375_MHC_IP_R1	1	531.2005615234375	2	530.801568	1059.58858	-0.85938	-0.00045616	-0.67167	-0.00035652	-1.531	-0.00081268	530.8014174915542	134.25	0.65785	134.25	134.12	134.78	0					26	12	3	0	0	0	0.27742	1	51776	51776		67.344	22.937	1	21384000			54582	5394	39728	40045	53259	53259					0.06117304825352221
TLMEEVLLL	9	Unmodified	_TLMEEVLLL_					0	0	0		ENSG00000143457|ENST00000271732|GOLPH3L;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;ENSG00000113384|ENST00000265070|GOLPH3	ENSG00000143457|ENST00000271732|GOLPH3L	ENSG00000143457|ENST00000271732|GOLPH3L	MULTI-SECPEP	A375_MHC_IP_R2	2	531.3847045898438	2	530.801568	1059.58858	-0.53075	-0.00028172	-1.2116	-0.0006431	-1.7423	-0.00092482	530.8013445294337	134.11	0.71539	134.28	134.11	134.83	0.16487					21	13	2	0	0	0	0.11711	1	52766	52766		77.984	24.409	1	12707000			54583	5394	39728	40045	53260	53260					0.06117304825352221
TLMEPGQAEE	10	Unmodified	_TLMEPGQAEE_					0	0	0			REV__ENSG00000171811|ENST00000368586|CFAP46	REV__ENSG00000171811|ENST00000368586|CFAP46	MULTI-MSMS	A375_MHC_IP_R2	2	553.1834106445312	2	552.747521	1103.48049	-0.93587	-0.0005173	-3.7095	-0.0020504	-4.6454	-0.0025677	552.7460004795424	41.532	0.3535	42.307	41.997	42.35	0.77451					9	6	2	0	0	0	0.6502	1	15390	15390		17.113	3.2068	1	1060000	+		54584	21098	39729	40046	53261	53261					-0.06711111495860678
TLMGTSLHLVF	11	Unmodified	_TLMGTSLHLVF_					0	0	0		ENSG00000219481|ENST00000430580|NBPF1;nc|ENSG00000219481|Q3BBV0|NBPF1	ENSG00000219481|ENST00000430580|NBPF1	ENSG00000219481|ENST00000430580|NBPF1	MULTI-SECPEP	A375_MHC_IP_R2	2	609.3919067382812	2	609.831191	1217.64783	-0.36133	-0.00022035	-4.4061	-0.002687	-4.7675	-0.0029074	610.3294832181059	68.563	0.25175	69.298	69.121	69.373	0.73511					6	4	2	0	0	0	0.99227	1	25973	25973		2.9952	0	1	707030			54585	9660	39730	40047	53262	53262					0.04771200839513767
TLMILTLQW	9	Unmodified	_TLMILTLQW_					0	0	0		ENST00000496112.5_1_7:44252178-44252295:+|nuORF	ENST00000496112.5_1_7:44252178-44252295:+|nuORF	ENST00000496112.5_1_7:44252178-44252295:+|nuORF	MSMS	A375_MHC_IP_R1	1	373.48046875	3	373.547461	1117.62055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.723	1	30.723	30.223	31.223	0								0	0	0	0.15486	1	9789	9789		10.8	5.752	1				54586	12717	39731	40048	53263	53263					0.06644717299172953
TLMLAMLSSL	10	Unmodified	_TLMLAMLSSL_					0	0	0		ENST00000487676.1_1_6:32632488-32634384:-|nuORF;ENSG00000179344|ENST00000434651|HLA-DQB1	ENST00000487676.1_1_6:32632488-32634384:-|nuORF	ENST00000487676.1_1_6:32632488-32634384:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	539.6459350585938	2	540.295596	1078.57664	-0.83127	-0.00044913	4.3352	0.0023423	3.5039	0.0018931	540.2982131409345	84.316	0.20027	84.316	84.191	84.391	0					6	3	2	0	0	0	0.74754	1	30831	30831		17.113	0	1	779380			54587	8223	39732	40049	53264	53264					0.040493648105439206
TLMNLGGLAV	10	Oxidation (M)	_TLM(Oxidation (M))NLGGLAV_		TLM(1)NLGGLAV		TLM(83)NLGGLAV	0	0	1		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159889062-159890299:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-SECPEP	A375_MHC_IP_R1	1	503.1755676269531	2	502.775885	1003.53722	-0.34744	-0.00017469	-0.3913	-0.00019674	-0.73875	-0.00037142	502.7757261592438	98.618	0.56367	98.618	98.3	98.864	0					23	10	3	0	0	0	0.1039	1	36231	36231		82.529	42.572	1	1791600			54588	6324	39733	40050	53265	53265		339			0.03558980851312299
TLMNLGGLAV	10	Oxidation (M)	_TLM(Oxidation (M))NLGGLAV_		TLM(1)NLGGLAV		TLM(100)NLGGLAV	0	0	1		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159889062-159890299:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1754455566406	2	502.775885	1003.53722	-0.73134	-0.0003677	0.18089	9.0949E-05	-0.55045	-0.00027675	502.7758986720643	97.771	0.66142	98.527	98.128	98.79	0.75587					18	12	2	0	0	0	0.027341	1	37102	37102		103.35	45.882	1	1901200			54589	6324	39733	40050	53266	53266		339			0.03558980851312299
TLMRDFTN	8	Unmodified	_TLMRDFTN_					0	0	0		nc|ENSG00000290988|Q8N8C0-2|ZNF781;nc|ENSG00000290988|Q8N8C0|ZNF781	nc|ENSG00000290988|Q8N8C0-2|ZNF781	nc|ENSG00000290988|Q8N8C0-2|ZNF781	MSMS	A375_MHC_IP_R2	2	499.1780700683594	2	499.242209	996.469866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.285	1	27.963	27.463	28.463	0.67857								0	0	0	0.16876	1	9305	9305		13.508	2.684	1				54590	14960	39734	40051	53267	53267					-0.028510493596513697
TLMRQLQKF	9	Unmodified	_TLMRQLQKF_					0	0	0		ENST00000464685.1_1_2:99788001-99788055:-|nuORF	ENST00000464685.1_1_2:99788001-99788055:-|nuORF	ENST00000464685.1_1_2:99788001-99788055:-|nuORF	MSMS	A375_MHC_IP_R2	2	388.9245300292969	3	388.890109	1163.6485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.383	1	42.158	41.658	42.658	0.77451								0	0	0	0.15486	1	15354	15354		4.1895	0	1				54591	12230	39735	40052	53268	53268					0.07322040279245812
TLMVSHLQY	9	Unmodified	_TLMVSHLQY_					0	0	0			REV__ENST00000396328.5_1_15:53908265-53908352:-|nuORF	REV__ENST00000396328.5_1_15:53908265-53908352:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	364.61077880859375	3	364.523315	1090.54812	0.31413	0.00011451	-1.1571	-0.00042178	-0.84295	-0.00030728	364.52308409994174	35.059	0.81516	35.059	34.81	35.625	0					28	15	3	0	0	0	0.69504	1	11720	11720		8.1555	0.54658	1	1861800	+		54592	24337	39736	40053	53269	53269					0.00646383225603131
TLMYWIGF	8	Unmodified	_TLMYWIGF_					0	0	0		ENSG00000203859|ENST00000369416|HSD3B2	ENSG00000203859|ENST00000369416|HSD3B2	ENSG00000203859|ENST00000369416|HSD3B2	MULTI-MSMS	A375_MHC_IP_R1	1	515.7097778320312	2	515.756964	1029.49937	-0.54878	-0.00028304	0.23276	0.00012005	-0.31602	-0.00016299	515.7563718659833	75.718	0.60275	75.718	75.464	76.067	0					14	11	2	0	0	0	0.7479	1	27562	27562		20.871	0	1	1452800			54593	9398	39737	40054	53270	53270					-0.014194853435128607
TLMYWIGF	8	Unmodified	_TLMYWIGF_					0	0	0		ENSG00000203859|ENST00000369416|HSD3B2	ENSG00000203859|ENST00000369416|HSD3B2	ENSG00000203859|ENST00000369416|HSD3B2	MULTI-MATCH	A375_MHC_IP_R2	2		2	515.756964	1029.49937	-0.81274	-0.00041918	3.3804	0.0017435	2.5676	0.0013243	516.2611874774891	75.088	0.25173	75.826	75.721	75.973	0.73752	0.053953	0.0023147	NaN	20.871	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	525830			54594	9398	39737	40054							-0.014194853435128607
TLNAVSIFT	9	Unmodified	_TLNAVSIFT_					0	0	0			REV__nc|ENSG00000069122|Q8IZF2-3|ADGRF5	REV__nc|ENSG00000069122|Q8IZF2-3|ADGRF5	MULTI-SECPEP	A375_MHC_IP_R1	1	482.678955078125	2	483.26875	964.522947	-0.56689	-0.00027396	1.6528	0.00079876	1.0859	0.0005248	483.2691531913547	66.74	0.66527	66.74	66.529	67.194	0					15	12	2	0	0	0	0.30925	1	24144	24144		49.554	1.8056	1	748760	+		54595	16553	39738	40055	53271	53271					0.03926651694678185
TLNCNGFQFY	10	Unmodified	_TLNCNGFQFY_					0	0	0		FCRL4|p.T43N|1|0.09|ENSG00000163518|chr1:157589383-157589383|G/T|missense_variant	FCRL4|p.T43N|1|0.09|ENSG00000163518|chr1:157589383-157589383|G/T|missense_variant	FCRL4|p.T43N|1|0.09|ENSG00000163518|chr1:157589383-157589383|G/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	604.2216186523438	2	603.766049	1205.51754	-0.32915	-0.00019873	-4.3188	-0.0026075	-4.6479	-0.0028063	603.7633539525261	104.11	0.15247	104.11	103.98	104.13	0					4	2	2	0	0	0	0.70496	1	38190	38190		10.074	0.6908	1	874750			54596	13992	39739	40056	53272	53272					-0.07699395159443156
TLNDREYQL	9	Unmodified	_TLNDREYQL_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-MSMS	A375_MHC_IP_R1	1	576.6876220703125	2	576.288202	1150.56185	-0.065781	-3.7909E-05	-0.33691	-0.00019416	-0.40269	-0.00023207	576.2880267418183	45.966	0.50769	45.966	45.687	46.195	0					19	9	3	0	0	0	0.027818	1	16107	16107		76.825	34.869	1	3746300			54597	1806	39740	40057	53273	53273					-0.007406677416156526
TLNDREYQL	9	Unmodified	_TLNDREYQL_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-MSMS	A375_MHC_IP_R2	2	576.6880493164062	2	576.288202	1150.56185	-0.25413	-0.00014645	-0.34357	-0.00019799	-0.59769	-0.00034444	576.2878854590348	45.185	0.60902	45.951	45.694	46.303	0.76519					20	11	3	0	0	0	0.02331	1	16872	16872		80.676	34.936	1	2597700			54598	1806	39740	40057	53274	53274					-0.007406677416156526
TLNEILAFVQ	10	Unmodified	_TLNEILAFVQ_					0	0	0			REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	MSMS	A375_MHC_IP_R2	2	383.2646484375	3	383.216768	1146.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.78	1	30.478	29.978	30.978	0.69872								0	0	0	0.1524	1	10424	10424		7.9454	2.0773	1		+		54599	20885	39741	40058	53275	53275					0.06102567820266813
TLNEIQHQL	9	Unmodified	_TLNEIQHQL_					0	0	0		ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	MULTI-SECPEP	A375_MHC_IP_R1	1	548.6925659179688	2	548.293288	1094.57202	-0.54854	-0.00030076	-0.28347	-0.00015542	-0.832	-0.00045618	548.2931229227013	46.262	0.96026	46.262	45.941	46.901	0					36	18	3	0	0	0	0.019499	1	16200	16200		93.166	58.764	1	4410900			54600	4954	39742	40059	53276	53276					0.028519399836113735
TLNEIQHQL	9	Unmodified	_TLNEIQHQL_					0	0	0		ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6927490234375	2	548.293288	1094.57202	-0.81536	-0.00044706	0.026388	1.4468E-05	-0.78897	-0.00043259	548.2932075593715	45.436	0.85787	46.201	45.947	46.805	0.76518					32	16	3	0	0	0	0.030244	1	16978	16978		107.1	57.167	1	4547300			54601	4954	39742	40059	53277	53277					0.028519399836113735
TLNEKLFLL	9	Unmodified	_TLNEKLFLL_					0	0	0		nc|ENSG00000144935|P48995-2|TRPC1;ENSG00000144935|ENST00000476941|TRPC1	nc|ENSG00000144935|P48995-2|TRPC1	nc|ENSG00000144935|P48995-2|TRPC1	MULTI-SECPEP	A375_MHC_IP_R1	1	546.2294921875	2	545.828975	1089.6434	-0.27933	-0.00015247	-0.62507	-0.00034118	-0.9044	-0.00049365	545.8291830437311	108.35	1.1139	108.35	107.9	109.02	0					43	21	3	0	0	0	0.14438	1	39711	39711		67.081	21.341	1	4721400			54602	5529	39743	40060	53278	53278					0.10216059688286805
TLNEKLFLL	9	Unmodified	_TLNEKLFLL_					0	0	0		nc|ENSG00000144935|P48995-2|TRPC1;ENSG00000144935|ENST00000476941|TRPC1	nc|ENSG00000144935|P48995-2|TRPC1	nc|ENSG00000144935|P48995-2|TRPC1	MULTI-SECPEP	A375_MHC_IP_R2	2	546.229736328125	2	545.828975	1089.6434	-0.85379	-0.00046602	-0.64724	-0.00035328	-1.501	-0.00081931	545.8289699116274	107.29	1.2238	108.04	107.74	108.97	0.75436					51	23	3	0	0	0	0.049608	1	40533	40533		84.522	8.7614	1	4292300			54603	5529	39743	40060	53279	53279					0.10216059688286805
TLNEKLTAL	9	Unmodified	_TLNEKLTAL_					0	0	0		ENSG00000254999|ENST00000530758|BRK1;nc|ENSG00000254999|Q8WUW1-2|BRK1	ENSG00000254999|ENST00000530758|BRK1	ENSG00000254999|ENST00000530758|BRK1	MULTI-SECPEP	A375_MHC_IP_R1	1	502.1481018066406	2	501.795132	1001.57571	-0.29812	-0.00014959	0.14903	7.478E-05	-0.14909	-7.4814E-05	501.7951648127603	56.88	1.0179	56.88	56.397	57.415	0					39	19	3	0	0	0	0.059142	1	20412	20412		88.364	44.382	1	6206700			54604	9885	39744	40061	53280	53280					0.07498609757453778
TLNEKLTAL	9	Unmodified	_TLNEKLTAL_					0	0	0		ENSG00000254999|ENST00000530758|BRK1;nc|ENSG00000254999|Q8WUW1-2|BRK1	ENSG00000254999|ENST00000530758|BRK1	ENSG00000254999|ENST00000530758|BRK1	MULTI-SECPEP	A375_MHC_IP_R2	2	502.1475830078125	2	501.795132	1001.57571	-0.80352	-0.0004032	0.058203	2.9206E-05	-0.74532	-0.000374	501.7951027151757	56.02	0.91832	56.77	56.337	57.255	0.75015					38	17	3	0	0	0	0.040539	1	21235	21235		91.085	24.628	1	7365500			54605	9885	39744	40061	53281	53281					0.07498609757453778
TLNEKNFFPE	10	Unmodified	_TLNEKNFFPE_					0	0	0		ENSG00000089199|ENST00000378961|CHGB	ENSG00000089199|ENST00000378961|CHGB	ENSG00000089199|ENST00000378961|CHGB	MULTI-SECPEP	A375_MHC_IP_R1	1	412.97137451171875	3	413.539911	1237.5979	0.2344	9.6935E-05	0.078176	3.2329E-05	0.31258	0.00012926	413.5398089759479	33.273	0.45767	33.273	33.09	33.547	0					17	8	4	0	0	0	0.92227	1	10961	10961		7.9454	4.0995	1	2981500			54606	1921	39745	40062	53282	53282					-0.0113921056477011
TLNEQDQF	8	Unmodified	_TLNEQDQF_					0	0	0			REV__ENST00000309334.5_2_10:63852127-63852166:+|nuORF	REV__ENST00000309334.5_2_10:63852127-63852166:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	498.1274719238281	2	497.727446	993.44034	-0.56755	-0.00028249	0.76837	0.00038244	0.20081	9.9949E-05	497.7276592877991	52.926	0.50597	52.926	52.643	53.148	0					19	9	3	0	0	0	0.84748	1	18852	18852		28.487	0	1	2571700	+		54607	23487	39746	40063	53283	53283					-0.05664290104141401
TLNERFTSY	9	Unmodified	_TLNERFTSY_					0	0	0		nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;ENST00000476194.1_1_6:136593123-136594302:-|nuORF;ENST00000534792.5_1_6:136590573-136594302:-|nuORF;ENST00000534269.5_1_6:136590404-136595119:-|nuORF;nc|ENSG00000029363|Q9NYF8-4|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-MSMS	A375_MHC_IP_R1	1	566.1781616210938	2	565.77747	1129.54039	-0.50895	-0.00028795	0.32889	0.00018608	-0.18007	-0.00010188	565.777740506818	47.029	0.76773	47.029	46.799	47.567	0					21	14	2	0	0	0	0.063448	1	16520	16520		59.052	22.925	1	4522300			54608	1104	39747	40064	53284	53284					-0.019200527703105763
TLNERFTSY	9	Unmodified	_TLNERFTSY_					0	0	0		nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;ENST00000476194.1_1_6:136593123-136594302:-|nuORF;ENST00000534792.5_1_6:136590573-136594302:-|nuORF;ENST00000534269.5_1_6:136590404-136595119:-|nuORF;nc|ENSG00000029363|Q9NYF8-4|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-SECPEP	A375_MHC_IP_R2	2	566.1781616210938	2	565.77747	1129.54039	-0.33218	-0.00018794	-0.0071013	-4.0177E-06	-0.33928	-0.00019196	565.777683339071	46.286	0.66118	47.051	46.805	47.466	0.76519					19	12	2	0	0	0	0.30133	1	17320	17320		51.415	11.466	1	4282000			54609	1104	39747	40064	53285	53285					-0.019200527703105763
TLNETDHSY	9	Unmodified	_TLNETDHSY_					0	0	0		nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	MSMS	A375_MHC_IP_R2	2	540.1809692382812	2	540.235635	1078.45672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.613	1	68.35	67.85	68.85	0.73631								0	0	0	0.15069	1	25618	25618		20.454	5.6154	1				54610	6631	39748	40065	53286	53286					-0.07937208938028562
TLNFFTDDF	9	Unmodified	_TLNFFTDDF_					0	0	0			REV__ENSG00000237172|ENST00000449549|B3GNT9	REV__ENSG00000237172|ENST00000449549|B3GNT9	MULTI-MSMS	A375_MHC_IP_R1	1	561.2030029296875	2	560.253297	1118.49204	-0.36911	-0.00020679	0.39945	0.00022379	0.030344	1.7001E-05	560.253326568088	88.98	0.65995	88.98	88.663	89.323	0					27	12	3	0	0	0	0.60101	1	32707	32707		14.838	4.0143	1	4247900	+		54611	22762	39749	40066	53287	53287					-0.06246546410261544
TLNFGNGF	8	Unmodified	_TLNFGNGF_					0	0	0		ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2	ENSG00000134759|ENST00000358232|ELP2	ENSG00000134759|ENST00000358232|ELP2	MULTI-SECPEP	A375_MHC_IP_R2	2	435.68731689453125	2	435.211235	868.407917	-0.33608	-0.00014627	-0.57559	-0.0002505	-0.91167	-0.00039677	435.21091407301503	44.579	0.50807	45.348	45.086	45.594	0.76909					13	9	2	0	0	0	0.972	1	16736	16736		0.69038	0.69038	1	694480			54612	4605	39750	40067	53288	53288					-0.03155032716472306
TLNHHHLL	8	Unmodified	_TLNHHHLL_					0	0	0			REV__ENST00000334512.9_1_10:81073638-81074007:+|nuORF	REV__ENST00000334512.9_1_10:81073638-81074007:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	492.47735595703125	2	492.772326	983.530098	-0.46572	-0.00022949	-0.5832	-0.00028738	-1.0489	-0.00051687	492.7718050864593	46.67	0.60828	46.67	46.395	47.003	0					17	11	2	0	0	0	0.972	1	16491	16491		5.7604	5.7604	1	924150	+		54613	23658	39751	40068	53289	53289					0.03767429085758067
TLNKKKKSKVK	11	Unmodified	_TLNKKKKSKVK_					0	0	0		ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	MSMS	A375_MHC_IP_R1	1	651.5444946289062	2	651.435004	1300.85546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.86	1	103.86	103.36	104.36	0								0	0	0	0.16334	1	38138	38138		1.3295	0	1				54614	1453	39752	40069	53290	53290					0.21706151099056115
TLNKPEYCVPV	11	Unmodified	_TLNKPEYCVPV_					0	0	0		ENST00000471849.5_1_1:23436104-23495315:-|nuORF	ENST00000471849.5_1_1:23436104-23495315:-|nuORF	ENST00000471849.5_1_1:23436104-23495315:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	421.9532165527344	3	421.553163	1261.63766	0.063473	2.6757E-05	-0.15114	-6.3713E-05	-0.087666	-3.6956E-05	421.55310623413453	98.371	0.55817	98.371	98.101	98.659	0					18	10	2	0	0	0	0.73679	1	36151	36151		2.4348	0.52841	1	1294300			54615	12362	39753	40070	53291	53291					0.017305931142800546
TLNKPEYCVPV	11	Unmodified	_TLNKPEYCVPV_					0	0	0		ENST00000471849.5_1_1:23436104-23495315:-|nuORF	ENST00000471849.5_1_1:23436104-23495315:-|nuORF	ENST00000471849.5_1_1:23436104-23495315:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	421.553163	1261.63766	0.063473	2.6757E-05	-0.15114	-6.3713E-05	-0.087666	-3.6956E-05	421.55310623413453	98.371	0.55817	98.371	98.101	98.659	0	0.056145	-8.4496E-05	NaN	2.4348	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1294300			54616	12362	39753	40070							0.017305931142800546
TLNNDVISL	9	Unmodified	_TLNNDVISL_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-SECPEP	A375_MHC_IP_R2	2	495.16900634765625	2	494.769114	987.523675	-0.39853	-0.00019718	-0.2102	-0.000104	-0.60873	-0.00030118	494.76921754585686	92.173	0.70653	92.912	92.635	93.341	0.73902					28	13	3	0	0	0	0.10103	1	35025	35025		62.573	12.64	1	3252300			54617	3109	39754	40071	53292	53292					0.029414463437205995
TLNNIKDFI	9	Unmodified	_TLNNIKDFI_					0	0	0		tr|U7SGL7|U7SGL7_FUSNUD-lactatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02234PE=3SV=1	tr|U7SGL7|U7SGL7_FUSNUD-lactatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02234PE=3SV=1	tr|U7SGL7|U7SGL7_FUSNUD-lactatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02234PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	539.1544799804688	2	539.300581	1076.58661	-1.179	-0.00063582	-0.60141	-0.00032434	-1.7804	-0.00096015	539.3002625474655	61.685	0.45287	62.43	62.07	62.523	0.74503					14	8	2	0	0	0	0.74412	1	23269	23269		6.2058	2.9245	1	1832000			54618	29409	39755	40072	53293	53293					0.05138012131760661
TLNNIWQY	8	Unmodified	_TLNNIWQY_					0	0	0		ENST00000505325.1_1_5:60643019-60643118:+|nuORF	ENST00000505325.1_1_5:60643019-60643118:+|nuORF	ENST00000505325.1_1_5:60643019-60643118:+|nuORF	MSMS	A375_MHC_IP_R2	2	526.1637573242188	2	526.263999	1050.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.393	1	29.072	28.572	29.572	0.67857								0	0	0	0.16876	1	9795	9795		21.747	0	1				54619	12840	39756	40073	53294	53294					-0.0097911659086094
TLNNIWQYY	9	Unmodified	_TLNNIWQYY_					0	0	0		ENST00000505325.1_1_5:60643019-60643118:+|nuORF	ENST00000505325.1_1_5:60643019-60643118:+|nuORF	ENST00000505325.1_1_5:60643019-60643118:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	405.27996826171875	3	405.532868	1213.57677	-0.33003	-0.00013384	-2.2655	-0.00091872	-2.5955	-0.0010526	405.5317839795686	44.106	0.35735	44.106	43.859	44.216	0					10	6	2	0	0	0	0.65246	1	15274	15274		7.1017	0	1	802550			54620	12840	39757	40074	53295	53295					-0.021471758736197444
TLNNLEIFL	9	Unmodified	_TLNNLEIFL_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	A375_MHC_IP_R1	1	1077.0338134765625	1	1076.59864	1075.59136	-0.10609	-0.00011421	-0.11076	-0.00011925	-0.21685	-0.00023346	1076.5985116618492	130.69	0.15251	130.69	130.62	130.77	0					4	2	2	0	0	0	0.030891	1	50328	50328		92.491	17.562	1	23830000			54621	3365	39758	40075	53296	53296					0.05658896274530889
TLNNLEIFL	9	Unmodified	_TLNNLEIFL_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	A375_MHC_IP_R1	1	539.2020874023438	2	538.802957	1075.59136	-0.88653	-0.00047766	-0.52294	-0.00028176	-1.4095	-0.00075943	538.8026011769036	130.74	0.254	130.74	130.57	130.82	0					9	4	3	0	0	0	0.0095341	1	50368	50368		118.89	7.6077	1	14290000			54622	3365	39758	40075	53297	53297					0.05658896274530889
TLNNLEIFL	9	Unmodified	_TLNNLEIFL_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	A375_MHC_IP_R2	2	539.2020263671875	2	538.802957	1075.59136	-0.8687	-0.00046806	-0.11709	-6.3088E-05	-0.98579	-0.00053115	538.8027932168075	130.47	0.35536	130.68	130.55	130.91	0.2142					11	6	3	0	0	0	0.0098859	1	51316	51316		144.35	33.063	1	19781000			54623	3365	39758	40075	53298	53298					0.05658896274530889
TLNNLEIFL	9	Unmodified	_TLNNLEIFL_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MATCH	A375_MHC_IP_R2	2		1	1076.59864	1075.59136	0.070169	7.5544E-05	-1.056	-0.0011369	-0.98582	-0.0010613	1076.5974011410078	130.5	0.25359	130.72	130.6	130.86	0.2142	0.011503	-0.00064805	NaN	92.491	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19860000			54624	3365	39758	40075							0.05658896274530889
TLNNNSFSA	9	Unmodified	_TLNNNSFSA_					0	0	0			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MULTI-SECPEP	A375_MHC_IP_R2	2	484.6274719238281	2	484.227613	966.440674	-0.9944	-0.00048151	0.74527	0.00036088	-0.24913	-0.00012064	484.22799733601056	56.581	0.51019	57.331	57.152	57.662	0.75015					16	9	2	0	0	0	0.71341	1	21410	21410		8.7454	1.4562	1	4580400	+		54625	18629	39759	40076	53299	53299					-0.043888703842753785
TLNPLFDETF	10	Unmodified	_TLNPLFDETF_					0	0	0		ENSG00000110975|ENST00000228567|SYT10	ENSG00000110975|ENST00000228567|SYT10	ENSG00000110975|ENST00000228567|SYT10	MULTI-MSMS	A375_MHC_IP_R1	1	598.7162475585938	2	598.795329	1195.5761	-0.33085	-0.00019811	0.29534	0.00017685	-0.035517	-2.1267E-05	598.7953802283412	88.273	1.8316	88.273	87.289	89.12	0					63	35	2	0	0	0	0.38709	1	32141	32141		34.932	17.489	1	7430200			54626	2960	39760	40077	53300	53300					-0.013860153133464337
TLNRRVSRK	9	Unmodified	_TLNRRVSRK_					0	0	0			REV__ENSG00000175745|ENST00000327111|NR2F1	REV__ENSG00000175745|ENST00000327111|NR2F1	MSMS	A375_MHC_IP_R2	2	377.2792663574219	3	377.235267	1128.68397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.097	1	42.87	42.37	43.37	0.77306								0	0	0	0.15486	1	15650	15650		6.6304	0	1		+		54627	21363	39761	40078	53301	53301					0.12477838851259548
TLNSAAVTV	9	Unmodified	_TLNSAAVTV_					0	0	0		ENSG00000115216|ENST00000379852|NRBP1;ENST00000460499.5_1_2:27659579-27664676:+|nuORF;NRBP1|p.S534F|1|0.53|ENSG00000115216|chr2:27441805-27441805|C/T|missense_variant	ENSG00000115216|ENST00000379852|NRBP1	ENSG00000115216|ENST00000379852|NRBP1	MULTI-MSMS	A375_MHC_IP_R1	1	438.64532470703125	2	438.245275	874.475997	0.071207	3.1206E-05	-0.22166	-9.714E-05	-0.15045	-6.5934E-05	438.2451223755045	54.098	0.80967	54.098	53.809	54.619	0					31	15	3	0	0	0	0.012843	1	19278	19278		92.653	17.724	1	5779000			54628	3282	39762	40079	53302	53302					0.033737921435204044
TLNSAAVTV	9	Unmodified	_TLNSAAVTV_					0	0	0		ENSG00000115216|ENST00000379852|NRBP1;ENST00000460499.5_1_2:27659579-27664676:+|nuORF;NRBP1|p.S534F|1|0.53|ENSG00000115216|chr2:27441805-27441805|C/T|missense_variant	ENSG00000115216|ENST00000379852|NRBP1	ENSG00000115216|ENST00000379852|NRBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	875.8060913085938	1	875.483273	874.475997	-0.067185	-5.8819E-05	-0.52607	-0.00046057	-0.59326	-0.00051939	875.48283913701	54.073	0.7072	54.073	53.809	54.516	0					27	13	3	0	0	0	0.03109	1	19358	19358		103.35	25.204	1	8829300			54629	3282	39762	40079	53303	53303					0.033737921435204044
TLNSAAVTV	9	Unmodified	_TLNSAAVTV_					0	0	0		ENSG00000115216|ENST00000379852|NRBP1;ENST00000460499.5_1_2:27659579-27664676:+|nuORF;NRBP1|p.S534F|1|0.53|ENSG00000115216|chr2:27441805-27441805|C/T|missense_variant	ENSG00000115216|ENST00000379852|NRBP1	ENSG00000115216|ENST00000379852|NRBP1	MULTI-MSMS	A375_MHC_IP_R2	2	438.6449890136719	2	438.245275	874.475997	-0.88953	-0.00038983	0.4396	0.00019265	-0.44993	-0.00019718	438.2454476372906	53.303	0.71521	54.054	53.79	54.505	0.75105					26	13	3	0	0	0	0.02559	1	20082	20082		78.728	10.647	1	6996600			54630	3282	39762	40079	53304	53304					0.033737921435204044
TLNSQKSDGHL	11	Unmodified	_TLNSQKSDGHL_					0	0	0			REV__ENSG00000118496|ENST00000237281|FBXO30	REV__ENSG00000118496|ENST00000237281|FBXO30	MSMS	A375_MHC_IP_R1	1	600.6329345703125	2	600.304384	1198.59421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.72	1	139.72	139.22	140.22	0								0	0	0	0.16249	1	53690	53690		5.7319	0	1		+		54631	18044	39763	40080	53305	53305					0.0028611966138214484
TLNTFFRSDT	10	Unmodified	_TLNTFFRSDT_					0	0	0			REV__ENSG00000162877|ENST00000367136|PM20D1	REV__ENSG00000162877|ENST00000367136|PM20D1	MULTI-MSMS	A375_MHC_IP_R1	1	602.2528686523438	2	601.296027	1200.5775	-0.39265	-0.0002361	-1.1516	-0.00069246	-1.5443	-0.00092856	601.2961476384636	64.147	3.106	64.147	62.966	66.072	0					148	60	3	0	0	0	0.63639	1	23492	23492		18.146	0	1	9172200	+		54632	20314	39764	40081	53306	53306					-0.014763812245746522
TLNWRRRE	8	Unmodified	_TLNWRRRE_					0	0	0		ENSG00000162415|ENST00000359600|ZSWIM5;ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000162415|ENST00000359600|ZSWIM5	ENSG00000162415|ENST00000359600|ZSWIM5	MULTI-SECPEP	A375_MHC_IP_R1	1	376.96807861328125	3	377.544101	1129.61047	0.40573	0.00015318	2.1964	0.00082924	2.6021	0.00098242	377.544471444294	37.648	0.91571	37.648	36.845	37.761	0					22	17	2	0	0	0	0.972	1	12520	12520		2.7352	2.7352	1	1520300			54633	6531	39765	40082	53307	53307					0.05085290408806031
TLPAAPITSP	10	Unmodified	_TLPAAPITSP_					0	0	0			REV__ENSG00000198646|ENST00000359003|NCOA6	REV__ENSG00000198646|ENST00000359003|NCOA6	MULTI-MSMS	A375_MHC_IP_R1	1	484.6764831542969	2	484.276575	966.538597	-0.20203	-9.784E-05	0.11769	5.6992E-05	-0.084349	-4.0848E-05	484.2765584734347	47.593	0.85934	47.593	47.263	48.122	0					38	16	3	0	0	0	0.36703	1	16721	16721		36.127	5.4905	1	14682000	+		54634	22391	39766	40083	53308	53308					0.05398938211692439
TLPAAPITSP	10	Unmodified	_TLPAAPITSP_					0	0	0			REV__ENSG00000198646|ENST00000359003|NCOA6	REV__ENSG00000198646|ENST00000359003|NCOA6	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	484.276575	966.538597	-0.20203	-9.784E-05	0.11769	5.6992E-05	-0.084349	-4.0848E-05	484.2765584734347	47.593	0.85934	47.593	47.263	48.122	0	0.060479	2.4999E-05	NaN	36.127	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14682000	+		54635	22391	39766	40083							0.05398938211692439
TLPAAPITSP	10	Unmodified	_TLPAAPITSP_					0	0	0			REV__ENSG00000198646|ENST00000359003|NCOA6	REV__ENSG00000198646|ENST00000359003|NCOA6	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	484.276575	966.538597	-0.42442	-0.00020554	0.063076	3.0546E-05	-0.36135	-0.00017499	484.2765707979459	46.711	0.91819	47.472	47.104	48.022	0.76128	-0.060479	-2.7893E-05	NaN	36.127	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12716000	+		54636	22391	39766	40083							0.05398938211692439
TLPDPHGPDP	10	Unmodified	_TLPDPHGPDP_					0	0	0			REV__ENSG00000197948|ENST00000435817|FCHSD1	REV__ENSG00000197948|ENST00000435817|FCHSD1	MULTI-MSMS	A375_MHC_IP_R2	2	523.6788330078125	2	523.251089	1044.48762	-1.0662	-0.00055789	0.55197	0.00028882	-0.51424	-0.00026908	523.2509973795605	53.616	0.51089	54.367	53.995	54.505	0.75105					15	9	2	0	0	0	0.69833	1	20136	20136		13.042	0.51092	1	1604700	+		54637	22330	39767	40084	53309	53309					-0.032840108331583906
TLPEAIHFL	9	Unmodified	_TLPEAIHFL_					0	0	0		FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	520.6686401367188	2	520.792392	1039.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.51	1	102.51	102.01	103.01	0								0	0	0	0.15486	1	37673	37673		11.64	2.2929	1				54638	8107	39768	40085	53310	53310					0.05202930965651831
TLPEENYQV	9	Unmodified	_TLPEENYQV_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000526423.1_1_11:46700589-46702208:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MSMS	A375_MHC_IP_R1	1	547.1634521484375	2	546.764029	1091.5135	-0.54411	-0.0002975	0.32005	0.00017499	-0.22406	-0.00012251	546.7642957408499	60.61	0.96638	60.61	59.905	60.871	0					25	18	2	0	0	0	0.27715	1	21808	21808		32.305	10.559	1	2431200			54639	7942	39769	40086	53311	53311					-0.02859161381525155
TLPEENYQV	9	Unmodified	_TLPEENYQV_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000526423.1_1_11:46700589-46702208:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MSMS	A375_MHC_IP_R2	2	547.1629638671875	2	546.764029	1091.5135	-1.1335	-0.00061976	0.32496	0.00017768	-0.80855	-0.00044209	546.7642343672827	59.961	0.60909	60.708	60.45	61.059	0.74714					25	11	3	0	0	0	0.38603	1	22668	22668		25.399	0	1	3177200			54640	7942	39769	40086	53312	53312					-0.02859161381525155
TLPEKLFTV	9	Unmodified	_TLPEKLFTV_					0	0	0		ENST00000507411.5_1_3:98235680-98240280:-|nuORF	ENST00000507411.5_1_3:98235680-98240280:-|nuORF	ENST00000507411.5_1_3:98235680-98240280:-|nuORF	MSMS	A375_MHC_IP_R1	1	524.6929931640625	2	524.307875	1046.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.8	1	66.8	66.3	67.3	0								0	0	0	0.15283	1	24201	24201		16.942	2.104	1				54641	12864	39770	40087	53313	53313					0.07976084279880524
TLPFDDDHVPT	11	Unmodified	_TLPFDDDHVPT_					0	0	0		ENSG00000132356|ENST00000397128|PRKAA1;nc|ENSG00000132356|Q13131-2|PRKAA1	ENSG00000132356|ENST00000397128|PRKAA1	ENSG00000132356|ENST00000397128|PRKAA1	MULTI-MSMS	A375_MHC_IP_R1	1	628.7487182617188	2	628.793318	1255.57208	-0.61681	-0.00038784	0.62033	0.00039006	0.0035204	2.2136E-06	628.7935974037362	57.746	0.96356	57.746	57.467	58.43	0					25	18	3	0	0	0	0.67989	1	20773	20773		17.113	2.7075	1	2621700			54642	4396	39771	40088	53314	53314					-0.04548104807076925
TLPFDSFRFKY	11	Unmodified	_TLPFDSFRFKY_					0	0	0			REV__PDE6C|p.E508K|1|0.25|ENSG00000095464|chr10:93640109-93640109|G/A|missense_variant	REV__PDE6C|p.E508K|1|0.25|ENSG00000095464|chr10:93640109-93640109|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	711.2656860351562	2	710.86662	1419.71869	-0.7582	-0.00053898	-0.55459	-0.00039424	-1.3128	-0.00093322	711.367679141061	86.654	0.80894	86.654	86.274	87.083	0					25	15	2	0	0	0	0.63737	2	31758	31758;31844		20.415	8.1739	1	4732500	+		54643	27756	39772	40089	53315;53316	53315					0.02561617148694495
TLPFDSFRFKY	11	Unmodified	_TLPFDSFRFKY_					0	0	0			REV__PDE6C|p.E508K|1|0.25|ENSG00000095464|chr10:93640109-93640109|G/A|missense_variant	REV__PDE6C|p.E508K|1|0.25|ENSG00000095464|chr10:93640109-93640109|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	711.2656860351562	2	710.86662	1419.71869	-0.7582	-0.00053898	-0.55459	-0.00039424	-1.3128	-0.00093322	711.367679141061	86.654	0.80894	86.654	86.274	87.083	0					25	15	2	0	0	0	0.94168	1	31758	31758		20.415	8.1739	1	4732500	+		54644	27756	39772	40089	53317	53317					0.02561617148694495
TLPFDSFRFKY	11	Unmodified	_TLPFDSFRFKY_					0	0	0			REV__PDE6C|p.E508K|1|0.25|ENSG00000095464|chr10:93640109-93640109|G/A|missense_variant	REV__PDE6C|p.E508K|1|0.25|ENSG00000095464|chr10:93640109-93640109|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	711.2665405273438	2	710.86662	1419.71869	-0.75422	-0.00053615	0.0010354	7.3602E-07	-0.75318	-0.00053541	710.8666747165865	66.001	0.86165	66.001	65.616	66.478	0					43	16	3	0	0	0	0.94168	1	23854	23854		15.248	3.0078	1	7522400	+		54645	27756	39772	40089	53318	53318					0.02561617148694495
TLPFDSFRFKY	11	Unmodified	_TLPFDSFRFKY_					0	0	0			REV__PDE6C|p.E508K|1|0.25|ENSG00000095464|chr10:93640109-93640109|G/A|missense_variant	REV__PDE6C|p.E508K|1|0.25|ENSG00000095464|chr10:93640109-93640109|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	710.9088134765625	2	710.86662	1419.71869	-0.6433	-0.0004573	-0.35487	-0.00025226	-0.99816	-0.00070956	710.8663996760022	68.687	2.3364	69.422	68.662	70.998	0.73511					92	45	3	0	0	0	0.66366	1	25933	25933		18.373	10.218	1	3406600	+		54646	27756	39772	40089	53319	53319					0.02561617148694495
TLPFDSFRFKY	11	Unmodified	_TLPFDSFRFKY_					0	0	0			REV__PDE6C|p.E508K|1|0.25|ENSG00000095464|chr10:93640109-93640109|G/A|missense_variant	REV__PDE6C|p.E508K|1|0.25|ENSG00000095464|chr10:93640109-93640109|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	711.2667846679688	2	710.86662	1419.71869	-0.56909	-0.00040455	-0.69584	-0.00049465	-1.2649	-0.0008992	711.3678522855886	85.815	0.81416	86.551	86.085	86.899	0.73601					33	15	4	0	0	0	0.63737	1	32602	32602		20.415	5.1661	1	5274900	+		54647	27756	39772	40089	53320	53320					0.02561617148694495
TLPFDSFRFKY	11	Unmodified	_TLPFDSFRFKY_					0	0	0			REV__PDE6C|p.E508K|1|0.25|ENSG00000095464|chr10:93640109-93640109|G/A|missense_variant	REV__PDE6C|p.E508K|1|0.25|ENSG00000095464|chr10:93640109-93640109|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	711.2660522460938	2	710.86662	1419.71869	-0.83369	-0.00059264	-0.22752	-0.00016173	-1.0612	-0.00075438	710.8664492638605	65.214	1.0155	65.952	65.562	66.577	0.73811					46	19	3	0	0	0	0.86796	1	24668	24668		20.415	0	1	7909900	+		54648	27756	39772	40089	53321	53321					0.02561617148694495
TLPFDSFRFKY	11	Unmodified	_TLPFDSFRFKY_					0	0	0			REV__PDE6C|p.E508K|1|0.25|ENSG00000095464|chr10:93640109-93640109|G/A|missense_variant	REV__PDE6C|p.E508K|1|0.25|ENSG00000095464|chr10:93640109-93640109|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	711.265380859375	2	710.86662	1419.71869	-0.6433	-0.0004573	-0.35487	-0.00025226	-0.99816	-0.00070956	710.8663996760022	68.687	2.3364	69.422	68.662	70.998	0.73511					92	45	3	0	0	0	0.86796	1	26404	26404		20.415	8.1739	1	3406600	+		54649	27756	39772	40089	53322	53322					0.02561617148694495
TLPFDSFRFKY	11	Unmodified	_TLPFDSFRFKY_					0	0	0			REV__PDE6C|p.E508K|1|0.25|ENSG00000095464|chr10:93640109-93640109|G/A|missense_variant	REV__PDE6C|p.E508K|1|0.25|ENSG00000095464|chr10:93640109-93640109|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	710.86662	1419.71869	-0.58525	-0.00041603	-2.4498	-0.0017415	-3.0351	-0.0021575	711.3677227173749	86.241	0.2037	86.974	86.845	87.049	0.733	0.15984	-0.002651	NaN	20.415	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1121000	+		54650	27756	39772	40089							0.02561617148694495
TLPFWTHYLIN	11	Unmodified	_TLPFWTHYLIN_					0	0	0		ENSG00000168329|ENST00000399220|CX3CR1;nc|ENSG00000168329|P49238-3|CX3CR1;nc|ENSG00000168329|P49238-4|CX3CR1;nc|ENSG00000168329|P49238-2|CX3CR1	ENSG00000168329|ENST00000399220|CX3CR1	ENSG00000168329|ENST00000399220|CX3CR1	MULTI-MSMS	A375_MHC_IP_R1	1	702.8545532226562	2	702.869163	1403.72377	-0.77787	-0.00054674	-0.5416	-0.00038068	-1.3195	-0.00092742	702.8688132076992	86.638	0.85983	86.638	86.224	87.083	0					52	16	4	0	0	0	0.63737	3	31804	31686;31804;31900		20.415	7.8672	1	20984000			54651	7289	39773	40090	53323;53324;53325	53324					0.03805921011348801
TLPFWTHYLIN	11	Unmodified	_TLPFWTHYLIN_					0	0	0		ENSG00000168329|ENST00000399220|CX3CR1;nc|ENSG00000168329|P49238-3|CX3CR1;nc|ENSG00000168329|P49238-4|CX3CR1;nc|ENSG00000168329|P49238-2|CX3CR1	ENSG00000168329|ENST00000399220|CX3CR1	ENSG00000168329|ENST00000399220|CX3CR1	MULTI-MSMS	A375_MHC_IP_R2	2	703.2683715820312	2	702.869163	1403.72377	-0.54264	-0.00038141	-0.79739	-0.00056046	-1.34	-0.00094186	702.8687213437877	85.797	1.0181	86.533	86.085	87.103	0.73602					60	19	4	0	0	0	0.66366	1	32558	32558		18.373	2.224	1	29530000			54652	7289	39773	40090	53326	53326					0.03805921011348801
TLPGGELKE	9	Unmodified	_TLPGGELKE_					0	0	0			REV__ENST00000521421.1_1_7:27212181-27212334:-|nuORF	REV__ENST00000521421.1_1_7:27212181-27212334:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	944.5059204101562	1	943.509488	942.502212	-0.0038037	-3.5889E-06	0.078036	7.3628E-05	0.074233	7.0039E-05	943.5094858831746	100.39	0.81944	101.15	100.83	101.65	0.76278					32	15	3	0	0	0	0.58047	1	37973	37973		15.847	1.0089	1	8398100	+		54653	25718	39774	40091	53327	53327					0.028660613149895653
TLPGGELKE	9	Unmodified	_TLPGGELKE_					0	0	0			REV__ENST00000521421.1_1_7:27212181-27212334:-|nuORF	REV__ENST00000521421.1_1_7:27212181-27212334:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	943.509488	942.502212	0.063178	5.9609E-05	0.13599	0.00012831	0.19917	0.00018792	943.5094482342583	101.26	0.65883	101.26	100.89	101.55	0	0.053703	1.9022E-05	NaN	15.847	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10861000	+		54654	25718	39774	40091							0.028660613149895653
TLPGGELKE	9	Unmodified	_TLPGGELKE_					0	0	0			REV__ENST00000521421.1_1_7:27212181-27212334:-|nuORF	REV__ENST00000521421.1_1_7:27212181-27212334:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	943.509488	942.502212	-0.0038037	-3.5889E-06	0.078036	7.3628E-05	0.074233	7.0039E-05	943.5094858831746	100.39	0.81944	101.15	100.83	101.65	0.76278	-0.053703	-3.566E-05	NaN	15.847	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8398100	+		54655	25718	39774	40091							0.028660613149895653
TLPILLGGLLS	11	Unmodified	_TLPILLGGLLS_					0	0	0		ENST00000435366.2_2_20:33864837-33865065:-|nuORF	ENST00000435366.2_2_20:33864837-33865065:-|nuORF	ENST00000435366.2_2_20:33864837-33865065:-|nuORF	MSMS	A375_MHC_IP_R2	2	548.759765625	2	548.85245	1095.69035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.605	1	92.339	91.839	92.839	0.7345								0	0	0	0.15377	1	34842	34842		18.146	2.2992	1				54656	11909	39775	40092	53328	53328					0.14632919239443254
TLPISYQLL	9	Unmodified	_TLPISYQLL_					0	0	0		nc|ENSG00000261371|P16284-5|PECAM1;nc|ENSG00000261371|P16284-3|PECAM1;nc|ENSG00000261371|P16284-4|PECAM1;nc|ENSG00000261371|P16284-2|PECAM1;nc|ENSG00000261371|P16284-6|PECAM1;ENSG00000261371|ENST00000563924|PECAM1	nc|ENSG00000261371|P16284-5|PECAM1	nc|ENSG00000261371|P16284-5|PECAM1	MULTI-SECPEP	A375_MHC_IP_R2	2	524.1800537109375	2	524.307875	1046.6012	-0.45295	-0.00023748	-1.0327	-0.00054146	-1.4857	-0.00077894	524.3070410360283	133.21	0.30487	133.37	133.3	133.6	0.16487					6	5	2	0	0	0	0.73363	1	52389	52389		15.847	4.2069	1	1978000			54657	9939	39776	40093	53329	53329					0.07976084279880524
TLPKFFIEI	9	Unmodified	_TLPKFFIEI_					0	0	0			REV__nc|ENSG00000171817|Q8NDQ6-4|ZNF540	REV__nc|ENSG00000171817|Q8NDQ6-4|ZNF540	MSMS	A375_MHC_IP_R1	1	369.9363708496094	3	369.886471	1106.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.493	1	41.493	40.993	41.993	0								0	0	0	0.15486	1	14328	14328		4.5289	0.33936	1		+		54658	26422	39777	40094	53330	53330					0.08852961176603458
TLPLRQEVPS	10	Unmodified	_TLPLRQEVPS_					0	0	0			REV__nc|ENSG00000075340|P35612-2|ADD2	REV__nc|ENSG00000075340|P35612-2|ADD2	MULTI-MSMS	A375_MHC_IP_R2	2	380.58905029296875	3	380.552151	1138.63462	-0.27134	-0.00010326	-0.25146	-9.5694E-05	-0.5228	-0.00019895	380.8863373735058	19.105	0.35003	19.708	19.483	19.833	0.60308					8	6	2	0	0	0	0.71364	1	5861	5861		6.1918	0.40842	1	1260600	+		54659	27115	39778	40095	53331	53331					0.07085086051802136
TLPLRSNSI	9	Unmodified	_TLPLRSNSI_					0	0	0		nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENSG00000124151|ENST00000371998|NCOA3;nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	nc|ENSG00000124151|Q9Y6Q9-2|NCOA3	nc|ENSG00000124151|Q9Y6Q9-2|NCOA3	MULTI-SECPEP	A375_MHC_IP_R1	1	501.1743469238281	2	500.792924	999.571294	-0.41838	-0.00020952	-0.84604	-0.00042369	-1.2644	-0.00063321	500.7937069652351	76.067	0.70604	76.067	75.664	76.37	0					16	13	2	0	0	0	0.60917	1	27746	27746		9.3831	0	1	1323300			54660	3873	39779	40096	53332	53332					0.07149145334562945
TLPMCIRYEK	10	Unmodified	_TLPMCIRYEK_					0	0	0			REV__nc|ENSG00000154217|Q9UKF7-2|PITPNC1	REV__nc|ENSG00000154217|Q9UKF7-2|PITPNC1	MSMS	A375_MHC_IP_R1	1	627.40966796875	2	627.322676	1252.6308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.084	1	27.084	26.584	27.584	0								0	0	0	0.15265	1	8163	8163		12.241	2.0901	1		+		54661	19869	39780	40097	53333	53333					0.014589569620738985
TLPPAHCSPA	10	Unmodified	_TLPPAHCSPA_					0	0	0		nc|ENSG00000142303|Q9H324-2|ADAMTS10;nc|ENSG00000142303|Q9H324|ADAMTS10;ENSG00000142303|ENST00000597188|ADAMTS10	nc|ENSG00000142303|Q9H324-2|ADAMTS10	nc|ENSG00000142303|Q9H324-2|ADAMTS10	MULTI-MSMS	A375_MHC_IP_R1	1	497.1571044921875	2	497.244752	992.474951	-0.49456	-0.00024592	2.0263	0.0010076	1.5318	0.00076166	497.24723860424507	46.861	1.4228	46.861	46.094	47.517	0					47	27	3	0	0	0	0.69306	1	16258	16258		13.906	0.39817	1	1331000			54662	5302	39781	40098	53334	53334					-0.02158745497047221
TLPPEIQAW	9	Unmodified	_TLPPEIQAW_					0	0	0		ENST00000594468.1_1_19:58988585-58988960:+|nuORF;ENST00000391694.4_1_19:58988585-58991546:+|nuORF;nc|ENSG00000083838|Q9NWS9-2|ZNF446;ENSG00000083838|ENST00000594369|ZNF446	ENST00000594468.1_1_19:58988585-58988960:+|nuORF	ENST00000594468.1_1_19:58988585-58988960:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	528.182373046875	2	527.782025	1053.5495	-0.2689	-0.00014192	0.14803	7.8128E-05	-0.12087	-6.3795E-05	527.7820990240898	108.96	2.4385	108.96	107.65	110.09	0					70	47	2	0	0	0	0.34064	1	39902	39902		27.629	4.8925	1	1634300			54663	1789	39782	40099	53335	53335					0.024863405860060084
TLPPEIQAW	9	Unmodified	_TLPPEIQAW_					0	0	0		ENST00000594468.1_1_19:58988585-58988960:+|nuORF;ENST00000391694.4_1_19:58988585-58991546:+|nuORF;nc|ENSG00000083838|Q9NWS9-2|ZNF446;ENSG00000083838|ENST00000594369|ZNF446	ENST00000594468.1_1_19:58988585-58988960:+|nuORF	ENST00000594468.1_1_19:58988585-58988960:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	528.1817626953125	2	527.782025	1053.5495	-0.50481	-0.00026643	-0.11617	-6.1311E-05	-0.62098	-0.00032774	527.7819378736053	107.87	2.1934	108.63	107.84	110.04	0.75436					62	42	2	0	0	0	0.14572	1	40980	40980		45.7	31.794	1	1621900			54664	1789	39782	40099	53336	53336					0.024863405860060084
TLPPEKLPYL	10	Unmodified	_TLPPEKLPYL_					0	0	0		nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN	nc|ENSG00000130396|P55196-2|AFDN	nc|ENSG00000130396|P55196-2|AFDN	MSMS	A375_MHC_IP_R2	2	390.9642028808594	3	390.897147	1169.66961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.334	1	29.012	28.512	29.512	0.67857								0	0	0	0.15332	1	9769	9769		5.7834	0.73591	1				54665	4241	39783	40100	53337	53337					0.09156328859762652
TLPPESTQV	9	Unmodified	_TLPPESTQV_					0	0	0		nc|ENSG00000095059|P49366-2|DHPS;ENSG00000095059|ENST00000210060|DHPS;ENST00000593473.1_1_19:12790962-12792580:-|nuORF	nc|ENSG00000095059|P49366-2|DHPS	nc|ENSG00000095059|P49366-2|DHPS	MULTI-MSMS	A375_MHC_IP_R1	1	486.6556701660156	2	486.25584	970.497126	-0.23172	-0.00011268	0.0021941	1.0669E-06	-0.22953	-0.00011161	486.25571429468226	46.593	3.7505	46.593	44.928	48.679	0					179	73	3	0	0	0	0.0092471	3	16068	16068;16291;16451		103.35	41.996	1	14500000			54666	2034	39784	40101	53338;53339;53340	53338					0.010697574523760522
TLPPESTQV	9	Unmodified	_TLPPESTQV_					0	0	0		nc|ENSG00000095059|P49366-2|DHPS;ENSG00000095059|ENST00000210060|DHPS;ENST00000593473.1_1_19:12790962-12792580:-|nuORF	nc|ENSG00000095059|P49366-2|DHPS	nc|ENSG00000095059|P49366-2|DHPS	MULTI-SECPEP	A375_MHC_IP_R1	1	970.876220703125	1	971.504403	970.497126	0.12076	0.00011732	-0.075209	-7.3066E-05	0.045555	4.4257E-05	971.504250509914	46.682	2.9388	46.682	45.284	48.223	0					132	57	3	0	0	0	0.31606	1	16413	16413		47.749	20.865	1	4976600			54667	2034	39784	40101	53341	53341					0.010697574523760522
TLPPESTQV	9	Unmodified	_TLPPESTQV_					0	0	0		nc|ENSG00000095059|P49366-2|DHPS;ENSG00000095059|ENST00000210060|DHPS;ENST00000593473.1_1_19:12790962-12792580:-|nuORF	nc|ENSG00000095059|P49366-2|DHPS	nc|ENSG00000095059|P49366-2|DHPS	MULTI-MSMS	A375_MHC_IP_R2	2	486.6557312011719	2	486.25584	970.497126	-0.5557	-0.00027021	0.17114	8.3218E-05	-0.38456	-0.000187	486.25580542520885	46.015	4.0071	46.78	44.879	48.887	0.76519					169	78	3	0	0	0	0.012843	4	17098	16875;17098;17193;17547		92.653	34.18	1	17847000			54668	2034	39784	40101	53342;53343;53344;53345	53343					0.010697574523760522
TLPPESTQV	9	Unmodified	_TLPPESTQV_					0	0	0		nc|ENSG00000095059|P49366-2|DHPS;ENSG00000095059|ENST00000210060|DHPS;ENST00000593473.1_1_19:12790962-12792580:-|nuORF	nc|ENSG00000095059|P49366-2|DHPS	nc|ENSG00000095059|P49366-2|DHPS	MULTI-MATCH	A375_MHC_IP_R2	2		1	971.504403	970.497126	-0.0046469	-4.5145E-06	-0.12414	-0.00012061	-0.12879	-0.00012512	971.5042173679893	46.015	3.2482	46.78	45.134	48.382	0.76519	0.049281	-3.0667E-05	NaN	47.749	115	63	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6361200			54669	2034	39784	40101							0.010697574523760522
TLPPGLSHRV	10	Unmodified	_TLPPGLSHRV_					0	0	0			REV__ENST00000507272.5_1_4:2934846-2935355:-|nuORF	REV__ENST00000507272.5_1_4:2934846-2935355:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	359.9332275390625	3	359.545219	1075.61383	0.0052934	1.9032E-06	-1.4304	-0.00051431	-1.4252	-0.00051241	359.5451356252689	24.622	0.20015	24.622	24.498	24.698	0					5	3	2	0	0	0	0.93194	1	6977	6977		5.4027	2.9042	1	1588300	+		54670	23615	39785	40102	53346	53346					0.07904540462777732
TLPPGPDPLL	10	Unmodified	_TLPPGPDPLL_					0	0	0		nc|ENSG00000172349|Q14005-4|IL16;nc|ENSG00000172349|Q14005-3|IL16;nc|ENSG00000172349|Q14005-2|IL16;ENSG00000172349|ENST00000683961|IL16	nc|ENSG00000172349|Q14005-4|IL16	nc|ENSG00000172349|Q14005-4|IL16	MULTI-SECPEP	A375_MHC_IP_R1	1	510.6921081542969	2	510.292225	1018.5699	0.017994	9.1824E-06	0.087245	4.452E-05	0.10524	5.3703E-05	510.29212246237836	69.662	0.60679	69.662	69.427	70.034	0					25	11	3	0	0	0	0.69172	1	25283	25283		25.399	7.253	1	4812100			54671	7702	39786	40103	53347	53347					0.061355112458159056
TLPPGPDPLL	10	Unmodified	_TLPPGPDPLL_					0	0	0		nc|ENSG00000172349|Q14005-4|IL16;nc|ENSG00000172349|Q14005-3|IL16;nc|ENSG00000172349|Q14005-2|IL16;ENSG00000172349|ENST00000683961|IL16	nc|ENSG00000172349|Q14005-4|IL16	nc|ENSG00000172349|Q14005-4|IL16	MULTI-SECPEP	A375_MHC_IP_R2	2	510.6917724609375	2	510.292225	1018.5699	-0.64305	-0.00032814	0.50174	0.00025603	-0.1413	-7.2107E-05	510.29228188685676	68.791	0.55768	69.526	69.323	69.88	0.73511					26	10	4	0	0	0	0.48072	1	26096	26096		37.974	10.345	1	4728300			54672	7702	39786	40103	53348	53348					0.061355112458159056
TLPQKRKSF	9	Unmodified	_TLPQKRKSF_					0	0	0		ENSG00000158683|ENST00000289672|PKD1L1	ENSG00000158683|ENST00000289672|PKD1L1	ENSG00000158683|ENST00000289672|PKD1L1	MULTI-SECPEP	A375_MHC_IP_R1	1	369.62335205078125	3	368.888986	1103.64513	0.43209	0.00015939	-0.12549	-4.6293E-05	0.3066	0.0001131	369.2232106667962	44.201	0.46141	44.201	43.959	44.42	0					19	8	3	0	0	0	0.76187	1	15443	15443		0.86438	0.62853	1	2646400			54673	6322	39787	40104	53349	53349					0.09745113496887825
TLPQLADTY	9	Unmodified	_TLPQLADTY_					0	0	0		nc|ENSG00000100031|P19440-2|GGT1;ENSG00000100031|ENST00000400382|GGT1	nc|ENSG00000100031|P19440-2|GGT1	nc|ENSG00000100031|P19440-2|GGT1	MULTI-MSMS	A375_MHC_IP_R2	2	511.6875305175781	2	511.263665	1020.51278	-0.62132	-0.00031766	-0.35398	-0.00018098	-0.9753	-0.00049863	511.26345503869356	84.967	1.0174	85.703	85.171	86.188	0.73601					41	19	3	0	0	0	0.51106	1	32410	32410		19.257	0	1	6490600			54674	2105	39788	40105	53350	53350					0.0033404396941705272
TLPRLKAFI	9	Unmodified	_TLPRLKAFI_					0	0	0		ENSG00000119912|ENST00000265986|IDE;nc|ENSG00000119912|P14735-2|IDE;ENST00000496903.5_1_10:94214203-94257457:-|nuORF	ENSG00000119912|ENST00000265986|IDE	ENSG00000119912|ENST00000265986|IDE	MULTI-SECPEP	A375_MHC_IP_R2	2	529.163330078125	2	529.839677	1057.6648	-0.49621	-0.00026291	-0.4097	-0.00021708	-0.90591	-0.00047999	529.8393486237651	68.055	0.55916	68.79	68.459	69.018	0.73511					14	10	2	0	0	0	0.75466	1	25830	25830		4.3292	0	1	1986800			54675	3633	39789	40106	53351	53351					0.13827489507639257
TLPSDTFINY	10	Unmodified	_TLPSDTFINY_					0	0	0			REV__tr|U7SYH8|U7SYH8_FUSNUMethylated-DNA--protein-cysteinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00864PE=3SV=1	REV__tr|U7SYH8|U7SYH8_FUSNUMethylated-DNA--protein-cysteinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00864PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	585.7608032226562	2	585.787504	1169.56045	-0.0073557	-4.3089E-06	0.090283	5.2887E-05	0.082928	4.8578E-05	585.7875696667985	108.86	0.81082	108.86	108.41	109.22	0					41	15	4	0	0	0	0.48529	1	39820	39820		29.082	2.1979	1	10420000	+		54676	28631	39790	40107	53352	53352					-0.017543018303967983
TLPTARSL	8	Unmodified	_TLPTARSL_					0	0	0		nc|ENSG00000174792|Q17RF5-2|ODAPH	nc|ENSG00000174792|Q17RF5-2|ODAPH	nc|ENSG00000174792|Q17RF5-2|ODAPH	MULTI-SECPEP	A375_MHC_IP_R2	2	430.1555480957031	2	429.75581	857.497067	-0.38516	-0.00016553	0.041007	1.7623E-05	-0.34416	-0.0001479	429.7558206687322	55.93	0.40875	56.68	56.438	56.847	0.75015					12	7	2	0	0	0	0.95423	1	21186	21186		4.3292	0	1	1188400			54677	14777	39791	40108	53353	53353					0.06261802243045622
TLPTFDPTKV	10	Unmodified	_TLPTFDPTKV_					0	0	0		ENST00000440645.3_1_X:55309181-55315115:+|nuORF;chrX:55221824-55222621|137|35.1|0.05|9.6|+|ENST00000374952|PAGE5,PAGE5;ENSG00000158639|ENST00000374955|PAGE5;nc|ENSG00000158639|Q96GU1|PAGE5;chrX:55220651-55221375|128|17.59|0.04|8.9|+|ENST00000289619|PAGE5,PAGE5	ENST00000440645.3_1_X:55309181-55315115:+|nuORF	ENST00000440645.3_1_X:55309181-55315115:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	560.20751953125	2	559.808239	1117.60193	-0.73631	-0.00041219	0.12025	6.7315E-05	-0.61606	-0.00034488	559.8083714194267	80.809	0.7155	81.554	81.214	81.93	0.74473					27	13	3	0	0	0	0.85215	1	30666	30666		22.658	1.1211	1	3254200			54678	529	39792	40109	53354	53354					0.04782878928926948
TLPTQPWDIEN	11	Unmodified	_TLPTQPWDIEN_					0	0	0		AFM|p.R27W|2|0.39|ENSG00000079557|chr4:73481854-73481854|C/T|missense_variant	AFM|p.R27W|2|0.39|ENSG00000079557|chr4:73481854-73481854|C/T|missense_variant	AFM|p.R27W|2|0.39|ENSG00000079557|chr4:73481854-73481854|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	437.9518737792969	3	438.550587	1312.62993	-0.25801	-0.00011315	-1.429	-0.0006267	-1.687	-0.00073985	438.5499849910478	19.513	0.20295	19.513	19.42	19.623	0					6	3	2	0	0	0	0.98595	1	4874	4874		10.016	5.6101	1	1023200			54679	83	39793	40110	53355	53355					-0.013878428816269661
TLPTVERDY	9	Unmodified	_TLPTVERDY_					0	0	0			REV__ENST00000559785.5_1_15:77324735-77329514:+|nuORF	REV__ENST00000559785.5_1_15:77324735-77329514:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	546.6231079101562	2	547.279846	1092.54514	-0.78853	-0.00043154	-0.43773	-0.00023956	-1.2263	-0.00067111	547.279228443386	77.014	0.5566	77.757	77.453	78.01	0.74293					18	10	2	0	0	0	0.67483	1	29330	29330		14.838	6.9281	1	1395400	+		54680	19207	39794	40111	53356	53356					0.002568313724395921
TLPVSFAQLK	10	Unmodified	_TLPVSFAQLK_					0	0	0		ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	MULTI-SECPEP	A375_MHC_IP_R1	1	551.6187744140625	2	552.326599	1102.63865	-0.45893	-0.00025348	-0.71232	-0.00039343	-1.1712	-0.00064691	552.3267636551413	63.024	0.9744	63.024	62.249	63.223	0					23	18	2	0	0	0	0.91909	1	22613	22613		9.3831	0	1	1938200			54681	2842	39795	40112	53357	53357					0.09143175545523263
TLQCWEQVL	9	Unmodified	_TLQCWEQVL_					0	0	0		ENSG00000172869|ENST00000539542|DMXL1;nc|ENSG00000172869|Q9Y485|DMXL1	ENSG00000172869|ENST00000539542|DMXL1	ENSG00000172869|ENST00000539542|DMXL1	MULTI-SECPEP	A375_MHC_IP_R2	2	560.6948852539062	2	560.278792	1118.54303	-0.56824	-0.00031837	-0.041894	-2.3472E-05	-0.61013	-0.00034184	560.2776766248273	92.349	0.35454	93.088	92.836	93.19	0.73901					10	6	2	0	0	0	0.71541	1	35115	35115		3.9444	0	1	1420900			54682	7739	39796	40113	53358	53358					-0.011499206370217507
TLQDGERW	8	Unmodified	_TLQDGERW_					0	0	0			REV__ENSG00000162390|ENST00000343744|ACOT11	REV__ENSG00000162390|ENST00000343744|ACOT11	MULTI-SECPEP	A375_MHC_IP_R1	1	503.1694030761719	2	502.743431	1003.47231	-0.58401	-0.00029361	-0.15896	-7.9918E-05	-0.74298	-0.00037353	502.74372134805617	86.248	0.4555	86.248	85.921	86.376	0					11	8	2	0	0	0	0.90775	1	31634	31634		26.884	5.137	1	736610	+		54683	20247	39797	40114	53359	53359					-0.029288776303360464
TLQDIVYKL	9	Unmodified	_TLQDIVYKL_					0	0	0		ENSG00000277258|ENST00000620225|PCGF2;ENST00000456675.2_1_10:22615378-22616584:+|nuORF;ENSG00000168283|ENST00000376663|BMI1	ENSG00000277258|ENST00000620225|PCGF2	ENSG00000277258|ENST00000620225|PCGF2	MULTI-MSMS	A375_MHC_IP_R1	1	546.9649047851562	2	546.818607	1091.62266	-0.53239	-0.00029112	-0.78758	-0.00043067	-1.32	-0.00072178	546.818236637722	96.191	0.60972	96.191	95.817	96.427	0					19	11	2	0	0	0	0.11176	1	35350	35350		59.052	26.267	1	1462200			54684	10026	39798	40115	53360	53360					0.08051469308588821
TLQECWDLDRQ	11	Unmodified	_TLQECWDLDRQ_					0	0	0		ENSG00000127399|ENST00000359623|LRRC61	ENSG00000127399|ENST00000359623|LRRC61	ENSG00000127399|ENST00000359623|LRRC61	MSMS	A375_MHC_IP_R2	2	703.9662475585938	2	703.822083	1405.62961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.32	1	139.38	138.88	139.88	0.059906								0	0	0	0.16339	1	54590	54590		1.0715	0	1				54685	4087	39799	40116	53361	53361					-0.05697585873144817
TLQEFLKLA	9	Unmodified	_TLQEFLKLA_					0	0	0		ENSG00000142669|ENST00000270792|SH3BGRL3;ENST00000319041.6_1_1:26607416-26607611:+|nuORF	ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	MULTI-SECPEP	A375_MHC_IP_R1	1	531.6328125	2	531.813325	1061.6121	-0.57108	-0.00030371	0.0066601	3.5419E-06	-0.56442	-0.00030017	531.8133672559172	104.27	1.372	104.27	104.03	105.4	0					64	26	3	0	0	0	0.049608	1	38309	38309		84.522	36.774	1	5262900			54686	5324	39800	40117	53362	53362					0.08375486654176711
TLQEFLKLA	9	Unmodified	_TLQEFLKLA_					0	0	0		ENSG00000142669|ENST00000270792|SH3BGRL3;ENST00000319041.6_1_1:26607416-26607611:+|nuORF	ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	MULTI-MSMS	A375_MHC_IP_R2	2	532.2128295898438	2	531.813325	1061.6121	-0.64724	-0.00034421	-0.37222	-0.00019795	-1.0195	-0.00054216	531.8132328025741	103.44	1.2186	104.21	103.79	105	0.76428					63	23	4	0	0	0	0.033808	1	39322	39322		71.708	29.395	1	5024600			54687	5324	39800	40117	53363	53363					0.08375486654176711
TLQEKIHRL	9	Unmodified	_TLQEKIHRL_					0	0	0		ENSG00000183137|ENST00000517392|CEP57L1;nc|ENSG00000183137|Q8IYX8-2|CEP57L1	ENSG00000183137|ENST00000517392|CEP57L1	ENSG00000183137|ENST00000517392|CEP57L1	MULTI-SECPEP	A375_MHC_IP_R1	1	380.29608154296875	3	379.89614	1136.66659	0.37254	0.00014153	-0.049776	-1.891E-05	0.32276	0.00012262	379.8959828849962	25.158	0.45748	25.158	25.002	25.46	0					11	8	2	0	0	0	0.68927	1	7321	7321		22.775	7.0363	1	3942800			54688	8468	39801	40118	53364	53364					0.10372498525589435
TLQEQIEAI	9	Unmodified	_TLQEQIEAI_					0	0	0		nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1	nc|ENSG00000099995|Q15459-2|SF3A1	nc|ENSG00000099995|Q15459-2|SF3A1	MULTI-SECPEP	A375_MHC_IP_R1	1	522.5354614257812	2	522.782222	1043.54989	-0.70062	-0.00036627	0.18541	9.6929E-05	-0.51521	-0.00026934	522.7821154937501	86.308	0.75926	86.308	86.072	86.831	0					27	14	3	0	0	0	0.24324	1	31670	31670		45.7	11.298	1	3819800			54689	2099	39802	40119	53365	53365					0.029857155152058112
TLQEQIEAI	9	Unmodified	_TLQEQIEAI_					0	0	0		nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1	nc|ENSG00000099995|Q15459-2|SF3A1	nc|ENSG00000099995|Q15459-2|SF3A1	MULTI-SECPEP	A375_MHC_IP_R2	2	522.2017822265625	2	522.782222	1043.54989	-0.39652	-0.00020729	-0.79461	-0.00041541	-1.1911	-0.0006227	522.7814628535946	85.63	0.71258	86.366	86.085	86.797	0.73601					23	13	3	0	0	0	0.16676	1	32547	32547		49.933	19.296	1	3728700			54690	2099	39802	40119	53366	53366					0.029857155152058112
TLQEQLEKA	9	Unmodified	_TLQEQLEKA_					0	0	0		ENSG00000100941|ENST00000216832|PNN;PNN|p.R6K|1|0.29|ENSG00000100941|chr14:39175296-39175296|G/A|missense_variant;ENST00000554117.1_1_14:39644495-39645354:+|nuORF;PNN|p.R126Ifs*17|1|0.34|ENSG00000100941|chr14:39177641-39177662|AGAGACCTTATCCAGGATCAAA/-|frameshift_variant	ENSG00000100941|ENST00000216832|PNN	ENSG00000100941|ENST00000216832|PNN	MULTI-MSMS	A375_MHC_IP_R1	1	530.6875610351562	2	530.287671	1058.56079	-0.21736	-0.00011526	0.28693	0.00015216	0.069574	3.6894E-05	530.287973052466	39.008	0.81189	39.008	38.73	39.541	0					20	15	2	0	0	0	0.010883	1	13254	13254		179.28	88.199	1	9668200			54691	2236	39803	40120	53367	53367					0.03385117889479261
TLQEQLEKA	9	Unmodified	_TLQEQLEKA_					0	0	0		ENSG00000100941|ENST00000216832|PNN;PNN|p.R6K|1|0.29|ENSG00000100941|chr14:39175296-39175296|G/A|missense_variant;ENST00000554117.1_1_14:39644495-39645354:+|nuORF;PNN|p.R126Ifs*17|1|0.34|ENSG00000100941|chr14:39177641-39177662|AGAGACCTTATCCAGGATCAAA/-|frameshift_variant	ENSG00000100941|ENST00000216832|PNN	ENSG00000100941|ENST00000216832|PNN	MULTI-MSMS	A375_MHC_IP_R2	2	530.6865844726562	2	530.287671	1058.56079	-0.98333	-0.00052145	-2.3663	-0.0012548	-3.3496	-0.0017763	530.7866459679084	38.388	0.86845	39.163	38.739	39.607	0.77451					51	16	4	0	0	0	0.0020912	1	14033	14033		143.21	61.298	1	11780000			54692	2236	39803	40120	53368	53368					0.03385117889479261
TLQERLLAF	9	Unmodified	_TLQERLLAF_					0	0	0		ENSG00000177427|ENST00000323019|MIEF2;nc|ENSG00000177427|Q96C03-3|MIEF2	ENSG00000177427|ENST00000323019|MIEF2	ENSG00000177427|ENST00000323019|MIEF2	MULTI-SECPEP	A375_MHC_IP_R2	2	546.2164916992188	2	545.816399	1089.61824	-0.7201	-0.00039304	0.22311	0.00012178	-0.49699	-0.00027126	545.8166231145012	92.403	0.50595	93.142	92.937	93.443	0.73901					11	9	2	0	0	0	0.54812	1	35182	35182		31.268	7.2478	1	1123900			54693	8083	39804	40121	53369	53369					0.07702004885709357
TLQEVVTGV	9	Unmodified	_TLQEVVTGV_					0	0	0		ENST00000465241.5_1_7:141255266-141315366:+|nuORF;ENSG00000006530|ENST00000649286|AGK	ENST00000465241.5_1_7:141255266-141315366:+|nuORF	ENST00000465241.5_1_7:141255266-141315366:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	473.87933349609375	2	473.266207	944.517862	-0.54212	-0.00025657	0.17815	8.4311E-05	-0.36398	-0.00017226	473.26631877931476	76.853	0.51131	76.853	76.673	77.184	0					16	9	2	0	0	0	0.2487	1	28118	28118		34.402	0	1	2106300			54694	917	39805	40122	53370	53370					0.04338347832049294
TLQEVVTGV	9	Unmodified	_TLQEVVTGV_					0	0	0		ENST00000465241.5_1_7:141255266-141315366:+|nuORF;ENSG00000006530|ENST00000649286|AGK	ENST00000465241.5_1_7:141255266-141315366:+|nuORF	ENST00000465241.5_1_7:141255266-141315366:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	473.6662292480469	2	473.266207	944.517862	-0.54969	-0.00026015	0.4039	0.00019115	-0.14579	-6.9E-05	473.2663730616325	76.086	0.71135	76.826	76.487	77.199	0.74052					32	13	3	0	0	0	0.04093	1	28886	28886		67.838	5.2655	1	2926000			54695	917	39805	40122	53371	53371					0.04338347832049294
TLQFKLFHP	9	Unmodified	_TLQFKLFHP_					0	0	0			REV__nc|ENSG00000115459|Q96FG2-6|ELMOD3	REV__nc|ENSG00000115459|Q96FG2-6|ELMOD3	MULTI-SECPEP	A375_MHC_IP_R2	2	377.3011474609375	3	377.550082	1129.62842	0.34507	0.00013028	-1.3418	-0.00050659	-0.9967	-0.0003763	377.5493477950067	47.369	0.35677	48.13	47.919	48.275	0.76128					9	6	2	0	0	0	0.75519	1	17736	17736		14.405	14.405	1	989500	+		54696	27188	39806	40123	53372	53372					0.06878612610944401
TLQGAVGF	8	Unmodified	_TLQGAVGF_					0	0	0			REV__ENST00000487962.5_1_2:242435079-242438851:-|nuORF	REV__ENST00000487962.5_1_2:242435079-242438851:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	396.6314697265625	2	396.716153	791.417754	-0.21691	-8.605E-05	0.13161	5.2213E-05	-0.085292	-3.3837E-05	396.71625701647065	41.5	0.30573	42.274	42.198	42.504	0.77451					8	5	2	0	0	0	0.972	1	15414	15414		2.5775	0	1	1012800	+		54697	17142	39807	40124	53373	53373					0.013701552889074264
TLQGGEMTIQ	10	Unmodified	_TLQGGEMTIQ_					0	0	0		nc|ENSG00000106459|Q16656-2|NRF1;ENSG00000106459|ENST00000393232|NRF1;nc|ENSG00000106459|Q16656-4|NRF1;nc|ENSG00000106459|Q16656-3|NRF1	nc|ENSG00000106459|Q16656-2|NRF1	nc|ENSG00000106459|Q16656-2|NRF1	MSMS	A375_MHC_IP_R1	1	539.184326171875	2	539.265881	1076.51721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.12	1	103.12	102.62	103.62	0								0	0	0	0.14179	1	37894	37894		29.082	0	1				54698	2691	39808	40125	53374	53374					-0.017988148793165237
TLQGRDWV	8	Unmodified	_TLQGRDWV_					0	0	0		nc|ENSG00000277758|X6R8R1|SYT15B;nc|ENSG00000204176|Q9BQS2-3|SYT15;SYT15|p.Q209Sfs*20|1|0.26|ENSG00000204176|chr10:46582165-46582165|C/-|frameshift_variant;nc|ENSG00000204176|Q9BQS2-4|SYT15;nc|ENSG00000204176|Q9BQS2-2|SYT15;ENSG00000277758|ENST00000615923|SYT15B;ENSG00000204176|ENST00000374321|SYT15	nc|ENSG00000277758|X6R8R1|SYT15B	nc|ENSG00000277758|X6R8R1|SYT15B	MULTI-MSMS	A375_MHC_IP_R2	2	487.66937255859375	2	487.756341	973.498129	-0.3852	-0.00018788	-0.034466	-1.6811E-05	-0.41967	-0.0002047	487.75631319954067	47.1	0.61175	47.861	47.613	48.225	0.76128					17	11	2	0	0	0	0.77488	1	17569	17569		13.508	0	1	4425500			54699	14858	39809	40126	53375	53375					0.010320166119413443
TLQIFLQI	8	Unmodified	_TLQIFLQI_					0	0	0			REV__GLP2R|p.R417Q|1|0.36|ENSG00000065325|chr17:9880482-9880482|G/A|missense_variant	REV__GLP2R|p.R417Q|1|0.36|ENSG00000065325|chr17:9880482-9880482|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	488.6976013183594	2	488.29731	974.580068	-0.4141	-0.0002022	-0.85295	-0.00041649	-1.2671	-0.0006187	488.2968030922128	84.066	0.60593	84.066	83.736	84.341	0					17	11	2	0	0	0	0.93777	1	30815	30815		17.113	0	1	1317500	+		54700	26687	39810	40127	53376	53376					0.0917611897103825
TLQIFLQI	8	Unmodified	_TLQIFLQI_					0	0	0			REV__GLP2R|p.R417Q|1|0.36|ENSG00000065325|chr17:9880482-9880482|G/A|missense_variant	REV__GLP2R|p.R417Q|1|0.36|ENSG00000065325|chr17:9880482-9880482|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	488.29731	974.580068	-0.55796	-0.00027245	-0.25	-0.00012207	-0.80796	-0.00039452	488.29699671843423	83.133	0.45387	83.873	83.595	84.049	0.73962	-0.096636	5.9368E-05	NaN	12.241	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1508200	+		54701	26687	39810	40127							0.0917611897103825
TLQIHFLN	8	Unmodified	_TLQIHFLN_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MSMS	A375_MHC_IP_R1	1	493.1990661621094	2	493.276909	984.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.86	1	62.86	62.36	63.36	0								0	0	0	0.16876	1	22710	22710		12.532	0.89125	1				54702	2486	39811	40128	53377	53377					0.046377776514077595
TLQKEIEKV	9	Unmodified	_TLQKEIEKV_					0	0	0		ENSG00000137831|ENST00000322954|UACA;nc|ENSG00000137831|Q9BZF9-2|UACA	ENSG00000137831|ENST00000322954|UACA	ENSG00000137831|ENST00000322954|UACA	MULTI-MSMS	A375_MHC_IP_R1	1	544.7213745117188	2	544.321514	1086.62847	-0.94174	-0.00051261	0.24911	0.00013559	-0.69263	-0.00037701	544.3216632276651	29.123	0.30707	29.123	28.945	29.252	0					8	5	2	0	0	0	0.25915	1	9108	9108		41.347	18.689	1	3482400			54703	4925	39812	40129	53378	53378					0.08862567820256118
TLQKEIEKV	9	Unmodified	_TLQKEIEKV_					0	0	0		ENSG00000137831|ENST00000322954|UACA;nc|ENSG00000137831|Q9BZF9-2|UACA	ENSG00000137831|ENST00000322954|UACA	ENSG00000137831|ENST00000322954|UACA	MULTI-MSMS	A375_MHC_IP_R2	2	544.7210083007812	2	544.321514	1086.62847	-1.1839	-0.00064441	0.64267	0.00034982	-0.54121	-0.00029459	544.3218343908349	28.356	0.30478	29.035	28.858	29.163	0.67857					8	5	2	0	0	0	0.14795	1	9814	9814		51.488	16.556	1	3705100			54704	4925	39812	40129	53379	53379					0.08862567820256118
TLQLVKRSRPH	11	Unmodified	_TLQLVKRSRPH_					0	0	0		ENSG00000102699|ENST00000381989|PARP4;ENST00000484989.1_1_13:25026542-25029254:-|nuORF	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MSMS	A375_MHC_IP_R1	1	668.0780639648438	2	667.904402	1333.79425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.6	1	120.6	120.1	121.1	0								0	0	0	0.16297	1	44691	44691		3.2813	0	1				54705	2388	39813	40130	53380	53380					0.14070639119654516
TLQLVTYKSRQ	11	Unmodified	_TLQLVTYKSRQ_					0	0	0			REV__ENST00000552586.1_1_12:76765195-76765258:-|nuORF	REV__ENST00000552586.1_1_12:76765195-76765258:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	446.99176025390625	3	446.257626	1335.75105	-0.65933	-0.00029423	0.088448	3.9471E-05	-0.57088	-0.00025476	446.5919577616652	19.564	0.50659	20.174	19.942	20.449	0.61029					22	9	3	0	0	0	0.7328	1	6033	6033		6.2344	0.71106	1	1267200	+		54706	26059	39814	40131	53381	53381					0.09660404551686952
TLQLYPFSPS	10	Unmodified	_TLQLYPFSPS_					0	0	0		ENSG00000177103|ENST00000651296|DSCAML1	ENSG00000177103|ENST00000651296|DSCAML1	ENSG00000177103|ENST00000651296|DSCAML1	MULTI-SECPEP	A375_MHC_IP_R1	1	384.28643798828125	3	384.869368	1151.58628	0.060592	2.332E-05	0.99621	0.00038341	1.0568	0.00040673	384.8696870846532	28.97	0.25285	28.97	28.845	29.098	0					6	4	2	0	0	0	0.91556	1	8984	8984		1.5923	0	1	2139000			54707	8062	39815	40132	53382	53382					0.016545924119100164
TLQNDPPSL	9	Unmodified	_TLQNDPPSL_					0	0	0		ENSG00000172939|ENST00000311806|OXSR1;ENST00000483695.1_1_3:38263121-38266196:+|nuORF;ENST00000426620.5_1_3:38234779-38271948:+|nuORF	ENSG00000172939|ENST00000311806|OXSR1	ENSG00000172939|ENST00000311806|OXSR1	MULTI-MSMS	A375_MHC_IP_R1	1	493.1848449707031	2	492.753464	983.492375	-0.28009	-0.00013802	-0.54728	-0.00026968	-0.82737	-0.00040769	492.75376850741355	57.183	0.91894	57.183	56.599	57.518	0					25	17	2	0	0	0	0.32092	1	20416	20416		29.082	5.9332	1	936330			54708	7749	39816	40133	53383	53383					-3.126690376120678E-05
TLQNEYEL	8	Unmodified	_TLQNEYEL_					0	0	0		RB1|p.L743*|1|0.55|ENSG00000139687|chr13:48465013-48465043|TTGATCAAAGAAGAGGAGTATGATTCTATTA/-|frameshift_variant;RB1|p.L769Ffs*26|1|0.65|ENSG00000139687|chr13:48465088-48465089|-/T|frameshift_variant;RB1|p.L797Yfs*13|1|0.51|ENSG00000139687|chr13:48465268-48465268|T/-|frameshift_variant;ENSG00000139687|ENST00000267163|RB1	RB1|p.L743*|1|0.55|ENSG00000139687|chr13:48465013-48465043|TTGATCAAAGAAGAGGAGTATGATTCTATTA/-|frameshift_variant	RB1|p.L743*|1|0.55|ENSG00000139687|chr13:48465013-48465043|TTGATCAAAGAAGAGGAGTATGATTCTATTA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	505.1893615722656	2	505.245472	1008.47639	-0.76321	-0.00038561	0.24328	0.00012292	-0.51993	-0.00026269	505.24552446260253	107.36	0.50754	108.11	107.79	108.3	0.75436					11	9	2	0	0	0	0.93416	1	40560	40560		5.2307	0	1	728830			54709	5102	39817	40134	53384	53384					-0.02750832927290503
TLQNYFRMY	9	Unmodified	_TLQNYFRMY_					0	0	0		tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	412.9775390625	3	412.534103	1234.58048	-0.23525	-9.7049E-05	3.1005	0.0012791	2.8652	0.001182	412.87016644465865	24.002	0.56068	24.637	24.236	24.797	0.63484					12	10	2	0	0	0	0.71541	1	7825	7825		4.5289	0	1	1384800			54710	29524	39818	40135	53385	53385					-0.027428293714137908
TLQPYQKTV	9	Unmodified	_TLQPYQKTV_					0	0	0		nc|ENSG00000165164|Q6ZTR5-6|CFAP47;ENSG00000165164|ENST00000378653|CFAP47;nc|ENSG00000165164|Q6ZTR5-2|CFAP47;nc|ENSG00000165164|Q6ZTR5-1|CFAP47	nc|ENSG00000165164|Q6ZTR5-6|CFAP47	nc|ENSG00000165164|Q6ZTR5-6|CFAP47	MULTI-SECPEP	A375_MHC_IP_R2	2	539.1724243164062	2	539.300581	1076.58661	-0.8106	-0.00043716	-2.7736	-0.0014958	-3.5842	-0.001933	539.2986287496748	78.467	0.25302	79.211	79.084	79.337	0.74474					5	4	2	0	0	0	0.73363	1	29839	29839		0.35063	0	1	1016900			54711	6922	39819	40136	53386	53386					0.05138012131760661
TLQPYYSFA	9	Unmodified	_TLQPYYSFA_					0	0	0		tr|U7T631|U7T631_FUSNUZinctransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00357PE=3SV=1	tr|U7T631|U7T631_FUSNUZinctransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00357PE=3SV=1	tr|U7T631|U7T631_FUSNUZinctransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00357PE=3SV=1	MSMS	A375_MHC_IP_R2	2	545.2388916015625	2	545.266207	1088.51786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.75	1	103.51	103.01	104.01	0.76428								0	0	0	0.15069	1	38924	38924		20.454	4.6064	1				54712	30041	39820	40137	53387	53387					-0.022856521679386788
TLQQMLLKK	9	Unmodified	_TLQQMLLKK_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	A375_MHC_IP_R1	1	368.2466735839844	3	368.22661	1101.658	0.47289	0.00017413	-3.7493	-0.0013806	-3.2764	-0.0012065	368.5604294133757	21.162	0.86687	21.162	20.536	21.403	0					37	16	3	0	0	0	0.67787	1	5570	5570		8.9762	1.4992	1	1397000			54713	2058	39821	40138	53388	53388					0.1112380856479831
TLQSPRNSL	9	Unmodified	_TLQSPRNSL_					0	0	0		ENST00000233630.10_1_2:74735069-74735567:-|nuORF	ENST00000233630.10_1_2:74735069-74735567:-|nuORF	ENST00000233630.10_1_2:74735069-74735567:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.97998046875	2	508.28018	1014.54581	-0.29824	-0.00015159	1.0283	0.00052268	0.73009	0.00037109	508.27960963946	62.422	0.20514	62.422	62.3	62.505	0					6	3	2	0	0	0	0.69507	1	22551	22551		13.906	0	1	560540			54714	10152	39822	40139	53389	53389					0.03911670812135526
TLQTWLVQA	9	Unmodified	_TLQTWLVQA_					0	0	0		nc|ENSG00000134352|P40189-3|IL6ST;ENSG00000134352|ENST00000381298|IL6ST;nc|ENSG00000134352|P40189-2|IL6ST	nc|ENSG00000134352|P40189-3|IL6ST	nc|ENSG00000134352|P40189-3|IL6ST	MULTI-SECPEP	A375_MHC_IP_R1	1	530.6959228515625	2	530.295299	1058.57605	-0.4042	-0.00021435	1.0323	0.00054745	0.62815	0.0003331	530.2957505803352	110.15	1.0695	110.15	109.78	110.85	0					31	20	2	0	0	0	0.22619	1	40402	40402		72.968	33.018	1	2658800			54715	4569	39823	40140	53390	53390					0.049100294773325004
TLQTWLVQA	9	Unmodified	_TLQTWLVQA_					0	0	0		nc|ENSG00000134352|P40189-3|IL6ST;ENSG00000134352|ENST00000381298|IL6ST;nc|ENSG00000134352|P40189-2|IL6ST	nc|ENSG00000134352|P40189-3|IL6ST	nc|ENSG00000134352|P40189-3|IL6ST	MULTI-SECPEP	A375_MHC_IP_R2	2	530.695068359375	2	530.295299	1058.57605	-0.51368	-0.0002724	0.45085	0.00023908	-0.062834	-3.3321E-05	530.2954204489572	109.31	0.76037	110.06	109.72	110.48	0.74684					27	14	3	0	0	0	0.13199	1	41257	41257		66.457	30.33	1	2722200			54716	4569	39823	40140	53391	53391					0.049100294773325004
TLRAEDQGV	9	Unmodified	_TLRAEDQGV_					0	0	0		ENSG00000197410|ENST00000357232|DCHS2;nc|ENSG00000197410|Q6V1P9-5|DCHS2	ENSG00000197410|ENST00000357232|DCHS2	ENSG00000197410|ENST00000357232|DCHS2	MULTI-MSMS	A375_MHC_IP_R1	1	495.1559143066406	2	494.756538	987.498523	-0.46444	-0.00022978	-0.51922	-0.00025689	-0.98366	-0.00048667	494.7562208151169	94.333	0.71049	94.333	93.991	94.701	0					17	13	2	0	0	0	0.5339	1	34658	34658		18.135	5.0925	1	1284300			54717	9153	39824	40141	53392	53392					0.004273915411431517
TLRAGGRGP	9	Unmodified	_TLRAGGRGP_					0	0	0		ENSG00000164620|ENST00000297164|RELL2	ENSG00000164620|ENST00000297164|RELL2	ENSG00000164620|ENST00000297164|RELL2	MULTI-SECPEP	A375_MHC_IP_R1	1	443.15667724609375	2	442.756675	883.498798	0.14519	6.4285E-05	0.10519	4.6573E-05	0.25038	0.00011086	442.7566477333665	109.31	1.6772	109.31	108.26	109.93	0					79	32	3	0	0	0	0.79191	1	39857	39857		6.7232	6.7232	1	12591000			54718	6855	39825	40142	53393	53393					0.052388560516646976
TLRDGDRHSLR	11	Unmodified	_TLRDGDRHSLR_					0	0	0		nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.R4794Afs*50|1|0.26|ENSG00000154358|chr1:228319130-228319130|C/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;ENST00000494839.1_1_1:228481917-228482770:+|nuORF	nc|ENSG00000154358|Q5VST9-3|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	MSMS	A375_MHC_IP_R2	2	663.1663208007812	2	663.355274	1324.69599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.852	1	99.612	99.112	100.11	0.75977								0	0	0	0.162	1	37496	37496		10.151	1.995	1				54719	14690	39826	40143	53394	53394					0.04663410803800616
TLRDIETF	8	Unmodified	_TLRDIETF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-SECPEP	A375_MHC_IP_R1	1	498.16351318359375	2	497.763832	993.513111	-0.37378	-0.00018605	-0.095849	-4.771E-05	-0.46963	-0.00023376	497.7637263785605	61.632	1.4833	61.632	61.279	62.762	0					50	28	3	0	0	0	0.1678	1	22207	22207		92.653	31.296	1	11786000			54720	6498	39827	40144	53395	53395					0.016094636892944436
TLRDIETF	8	Unmodified	_TLRDIETF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-SECPEP	A375_MHC_IP_R2	2	498.1632080078125	2	497.763832	993.513111	-0.80659	-0.00040149	0.03264	1.6247E-05	-0.77395	-0.00038525	497.7637658603014	60.894	1.1106	61.639	61.211	62.322	0.74504					46	21	3	0	0	0	0.42778	1	22992	22992		69.105	7.7474	1	12161000			54721	6498	39827	40144	53396	53396					0.016094636892944436
TLRDLQNKS	9	Unmodified	_TLRDLQNKS_					0	0	0		nc|ENSG00000100083|Q9UJY5-4|GGA1;nc|ENSG00000100083|Q9UJY5-3|GGA1;ENSG00000100083|ENST00000343632|GGA1;nc|ENSG00000100083|Q9UJY5-6|GGA1;nc|ENSG00000100083|Q9UJY5-2|GGA1	nc|ENSG00000100083|Q9UJY5-4|GGA1	nc|ENSG00000100083|Q9UJY5-4|GGA1	MSMS	A375_MHC_IP_R1	1	537.6948852539062	2	537.798737	1073.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.868	1	76.868	76.368	77.368	0								0	0	0	0.14851	1	28027	28027		24.021	3.5669	1				54722	2112	39828	40145	53397	53397					0.04907342357910238
TLRDNQEY	8	Unmodified	_TLRDNQEY_					0	0	0			REV__ENSG00000147065|ENST00000360270|MSN	REV__ENSG00000147065|ENST00000360270|MSN	MULTI-SECPEP	A375_MHC_IP_R2	2	519.3046875	2	519.74617	1037.47779	-0.67769	-0.00035222	-0.28967	-0.00015055	-0.96735	-0.00050278	520.2463689080791	32.174	0.25578	32.911	32.704	32.96	0.73691					6	4	2	0	0	0	0.972	1	11402	11402		8.5933	0	1	652720	+		54723	19564	39829	40146	53398	53398					-0.039451988385280856
TLREKWHFIRW	11	Unmodified	_TLREKWHFIRW_					0	0	0			REV__ENST00000360566.6_1_2:10269382-10269442:+|nuORF	REV__ENST00000360566.6_1_2:10269382-10269442:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	524.6318969726562	3	524.624643	1570.8521	-0.49343	-0.00025886	-1.5902	-0.00083428	-2.0837	-0.0010931	524.62411923531	61.635	0.81847	61.635	61.176	61.994	0					34	15	3	0	0	0	0.73679	1	22162	22162		2.4348	1.1051	1	2460300	+		54724	23895	39830	40147	53399	53399					0.08950901045045612
TLRELEKCN	9	Unmodified	_TLRELEKCN_					0	0	0			REV__nc|ENSG00000164031|Q8TBM8-2|DNAJB14	REV__nc|ENSG00000164031|Q8TBM8-2|DNAJB14	MSMS	A375_MHC_IP_R1	1	369.26116943359375	3	369.193858	1104.55974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.957	1	21.957	21.457	22.457	0								0	0	0	0.15486	1	5841	5841		4.5289	0	1		+		54725	20438	39831	40148	53400	53400					0.011645802489056223
TLREMLLSTF	10	Unmodified	_TLREMLLSTF_					0	0	0			REV__nc|ENSG00000178462|A6NHL2-2|TUBAL3	REV__nc|ENSG00000178462|A6NHL2-2|TUBAL3	MULTI-SECPEP	A375_MHC_IP_R1	1	404.16595458984375	3	404.221525	1209.64274	-0.53188	-0.000215	-0.6039	-0.00024411	-1.1358	-0.00045911	404.5556203572372	41.995	0.45672	41.995	41.777	42.233	0					9	8	2	0	0	0	0.93405	1	14589	14589		2.8433	0	1	1182900	+		54726	21505	39832	40149	53401	53401					0.046308969769143005
TLRERREKL	9	Unmodified	_TLRERREKL_					0	0	0			REV__ENST00000264010.8_1_16:67605120-67644919:+|nuORF	REV__ENST00000264010.8_1_16:67605120-67644919:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	401.3028869628906	3	400.910561	1199.70985	-0.47038	-0.00018858	2.6569	0.0010652	2.1865	0.00087658	401.246316278297	28.163	0.35137	28.163	27.887	28.238	0					8	6	2	0	0	0	0.75519	1	8564	8564		14.405	9.6895	1	1419700	+		54727	23231	39833	40150	53402	53402					0.1179868830288342
TLRFLKLRRER	11	Unmodified	_TLRFLKLRRER_					0	0	0		nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154263|ENST00000690296|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MSMS	A375_MHC_IP_R2	2	496.67657470703125	3	496.64756	1486.92085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.213	1	83.953	83.453	84.453	0.73962								0	0	0	0.16338	1	31627	31627		1.1098	0.6038	1				54728	6077	39834	40151	53403	53403					0.1968656534472757
TLRFREERY	9	Unmodified	_TLRFREERY_					0	0	0			REV__nc|ENSG00000158604|Q7Z7H5-2|TMED4	REV__nc|ENSG00000158604|Q7Z7H5-2|TMED4	MULTI-SECPEP	A375_MHC_IP_R1	1	423.95416259765625	3	423.894799	1268.66257	-0.35225	-0.00014932	0.47236	0.00020023	0.12011	5.0914E-05	423.8948162245436	23.762	0.40652	23.762	23.635	24.042	0					9	7	2	0	0	0	0.76452	1	6654	6654		4.897	0	1	2826700	+		54729	27311	39835	40152	53404	53404					0.03898409031899064
TLRGRQFFRRF	11	Unmodified	_TLRGRQFFRRF_					0	0	0			REV__ENST00000449169.1_1_1:110835106-110881762:-|nuORF	REV__ENST00000449169.1_1_1:110835106-110881762:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	371.5744934082031	4	371.715285	1482.83203	0.078025	2.9003E-05	-0.35334	-0.00013134	-0.27531	-0.00010234	371.71501141575544	39.8	0.50837	39.8	39.541	40.05	0					20	9	3	0	0	0	1.0015	1	13639	13639		0.064406	0	1	3215300	+		54730	24876	39836	40153	53405	53405					0.10993150105105087
TLRISVKS	8	Unmodified	_TLRISVKS_					0	0	0		ENST00000454520.6_1_12:50400329-50410422:-|nuORF	ENST00000454520.6_1_12:50400329-50410422:-|nuORF	ENST00000454520.6_1_12:50400329-50410422:-|nuORF	MSMS	A375_MHC_IP_R1	1	452.3191223144531	2	452.284734	902.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.908	1	49.908	49.408	50.408	0								0	0	0	0.16876	1	17663	17663		7.2892	0.56607	1				54731	12109	39837	40154	53406	53406					0.09974064168466157
TLRKDHRW	8	Unmodified	_TLRKDHRW_					0	0	0		nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENSG00000113649|ENST00000679501|TCERG1;ENST00000503741.5_1_5:145883557-145887476:+|nuORF;ENST00000514719.1_1_5:145883057-145886815:+|nuORF;ENST00000506524.5_1_5:145862104-145889630:+|nuORF	nc|ENSG00000113649|O14776-2|TCERG1	nc|ENSG00000113649|O14776-2|TCERG1	MULTI-SECPEP	A375_MHC_IP_R1	1	371.28167724609375	3	371.20883	1110.60466	0.056437	2.095E-05	-0.57121	-0.00021204	-0.51477	-0.00019109	371.20837006298535	41.24	0.45689	41.24	41.013	41.47	0					11	8	2	0	0	0	0.972	1	14290	14290		8.7454	1.6437	1	1040100			54732	3172	39838	40155	53407	53407					0.05378191897125362
TLRKFGSRL	9	Unmodified	_TLRKFGSRL_					0	0	0		tr|U7SYU1|U7SYU1_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00934PE=4SV=1	tr|U7SYU1|U7SYU1_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00934PE=4SV=1	tr|U7SYU1|U7SYU1_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00934PE=4SV=1	MSMS	A375_MHC_IP_R1	1	539.2288818359375	2	539.330008	1076.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.28	1	115.28	114.78	115.78	0								0	0	0	0.1521	1	42275	42275		18.146	2.2992	1				54733	29846	39839	40156	53408	53408					0.11020533216765216
TLRKKLQET	9	Unmodified	_TLRKKLQET_					0	0	0		tr|U7SWE4|U7SWE4_FUSNUAminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01001PE=3SV=1	tr|U7SWE4|U7SWE4_FUSNUAminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01001PE=3SV=1	tr|U7SWE4|U7SWE4_FUSNUAminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01001PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	373.600830078125	3	372.896029	1115.66626	0.47385	0.0001767	-3.4516	-0.0012871	-2.9777	-0.0011104	373.2298605175499	27.573	0.20285	28.251	28.098	28.301	0.67857					6	3	2	0	0	0	0.79713	1	9443	9443		3.8763	0	1	1458500			54734	29805	39840	40157	53409	53409					0.11305078805776247
TLRKSTDQEMS	11	Unmodified	_TLRKSTDQEMS_					0	0	0		nc|ENSG00000215127|Q58G82|SYT14P1	nc|ENSG00000215127|Q58G82|SYT14P1	nc|ENSG00000215127|Q58G82|SYT14P1	MULTI-SECPEP	A375_MHC_IP_R1	1	648.7803344726562	2	648.316634	1294.61871	-0.22766	-0.0001476	0.27577	0.00017879	0.04811	3.119E-05	648.3166676414493	96.923	0.65826	96.923	96.68	97.338	0					17	12	2	0	0	0	0.99133	1	35688	35688		7.1017	0	1	1386800			54735	14901	39841	40158	53410	53410					-0.01680988247426285
TLRKVLQKTI	10	Unmodified	_TLRKVLQKTI_					0	0	0			REV__nc|ENSG00000111913|Q9Y4F9-2|RIPOR2	REV__nc|ENSG00000111913|Q9Y4F9-2|RIPOR2	MULTI-MSMS	A375_MHC_IP_R2	2	401.9514465332031	3	400.599324	1198.77614	-0.35996	-0.0001442	0.015454	6.1908E-06	-0.34451	-0.00013801	400.5992939522498	20.341	2.0788	20.952	20.197	22.276	0.61029					116	40	5	0	0	0	0.71267	1	6353	6353		6.6235	0	1	56894000	+		54736	17705	39842	40159	53411	53411					0.1847050414496607
TLRLFVLIH	9	Unmodified	_TLRLFVLIH_					0	0	0		ADGRA1|p.G299R|1|0.21|ENSG00000197177|chr10:133128723-133128723|G/A|missense_variant	ADGRA1|p.G299R|1|0.21|ENSG00000197177|chr10:133128723-133128723|G/A|missense_variant	ADGRA1|p.G299R|1|0.21|ENSG00000197177|chr10:133128723-133128723|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	371.8675231933594	3	371.237726	1110.69135	0.31619	0.00011738	-0.0031076	-1.1536E-06	0.31308	0.00011623	371.2376457152232	53.394	0.45695	53.394	53.25	53.707	0					16	8	3	0	0	0	0.81368	1	19038	19038		0.18151	0	1	2013400			54737	63	39843	40160	53412	53412					0.14043178398969758
TLRLFVLIH	9	Unmodified	_TLRLFVLIH_					0	0	0		ADGRA1|p.G299R|1|0.21|ENSG00000197177|chr10:133128723-133128723|G/A|missense_variant	ADGRA1|p.G299R|1|0.21|ENSG00000197177|chr10:133128723-133128723|G/A|missense_variant	ADGRA1|p.G299R|1|0.21|ENSG00000197177|chr10:133128723-133128723|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	371.237726	1110.69135	0.0037959	1.4092E-06	0.0043311	1.6079E-06	0.008127	3.0171E-06	371.23771008648305	52.351	0.40374	53.103	52.932	53.336	0.75225	-0.14522	4.8727E-06	NaN	0.18151	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1739100			54738	63	39843	40160							0.14043178398969758
TLRLMNSLAKR	11	Unmodified	_TLRLMNSLAKR_					0	0	0		ENST00000513116.1_1_1:26211808-26212198:-|nuORF	ENST00000513116.1_1_1:26211808-26212198:-|nuORF	ENST00000513116.1_1_1:26211808-26212198:-|nuORF	MSMS	A375_MHC_IP_R1	1	435.2820739746094	3	434.927335	1301.76017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.604	1	56.604	56.104	57.104	0								0	0	0	0.16313	1	20282	20282		2.4348	0.50728	1				54739	12925	39844	40161	53413	53413					0.12136474636372441
TLRLNLRWIA	10	Unmodified	_TLRLNLRWIA_					0	0	0			REV__ENST00000515519.5_1_5:148443155-148450922:+|nuORF	REV__ENST00000515519.5_1_5:148443155-148450922:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	419.65948486328125	3	419.259302	1254.75608	0.19529	8.1879E-05	0.031439	1.3181E-05	0.22673	9.506E-05	419.2593136887012	68.744	1.4697	68.744	68.412	69.882	0					83	28	5	0	0	0	0.70793	1	25115	25115		5.0475	1.4548	1	79514000	+		54740	25663	39845	40162	53414	53414					0.138887532049921
TLRLNLRWIA	10	Unmodified	_TLRLNLRWIA_					0	0	0			REV__ENST00000515519.5_1_5:148443155-148450922:+|nuORF	REV__ENST00000515519.5_1_5:148443155-148450922:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	628.7850341796875	2	628.385314	1254.75608	-0.75715	-0.00047578	0.10685	6.7145E-05	-0.65029	-0.00040864	628.3853942139027	67.841	0.56092	68.576	68.255	68.816	0.73511					24	10	3	0	0	0	0.92957	1	25680	25680		10.074	3.8681	1	5348300	+		54741	25663	39845	40162	53415	53415					0.138887532049921
TLRLPSLPG	9	Unmodified	_TLRLPSLPG_					0	0	0		ENST00000588072.5_1_18:11908402-11908690:-|nuORF	ENST00000588072.5_1_18:11908402-11908690:-|nuORF	ENST00000588072.5_1_18:11908402-11908690:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	477.69232177734375	2	477.292559	952.570566	-0.42746	-0.00020402	0.098046	4.6797E-05	-0.32942	-0.00015723	477.2925789329613	45.966	1.8268	45.966	45.384	47.211	0					106	35	5	0	0	0	0.41409	1	16438	16438		24.021	0	1	74250000			54742	13755	39846	40163	53416	53416					0.09238350685529895
TLRLQRLAH	9	Unmodified	_TLRLQRLAH_					0	0	0			REV__nc|ENSG00000065361|P21860-2|ERBB3	REV__nc|ENSG00000065361|P21860-2|ERBB3	MULTI-SECPEP	A375_MHC_IP_R1	1	369.4447326660156	3	369.896363	1106.66726	0.24363	9.0116E-05	0.51873	0.00019188	0.76235	0.00028199	369.8968114229528	25.382	0.6118	25.382	25.204	25.816	0					15	11	2	0	0	0	0.80535	1	7458	7458		0.18151	0.041616	1	2601000	+		54743	16496	39847	40164	53417	53417					0.11819337965334853
TLRLRAAPTL	10	Unmodified	_TLRLRAAPTL_					0	0	0		ENSG00000180432|ENST00000316161|CYP8B1	ENSG00000180432|ENST00000316161|CYP8B1	ENSG00000180432|ENST00000316161|CYP8B1	MULTI-SECPEP	A375_MHC_IP_R1	1	371.9171142578125	3	371.236385	1110.68733	0.13898	5.1593E-05	-0.31037	-0.00011522	-0.17139	-6.3627E-05	371.2361986128863	27.912	0.40292	27.912	27.584	27.987	0					11	7	2	0	0	0	0.94651	1	8399	8399		0.12286	0	1	1109400			54744	8296	39848	40165	53418	53418					0.13641088905251308
TLRNGTLVAF	10	Unmodified	_TLRNGTLVAF_					0	0	0		nc|ENSG00000116690|Q92954-5|PRG4;nc|ENSG00000116690|Q92954-4|PRG4;nc|ENSG00000116690|Q92954-3|PRG4;nc|ENSG00000116690|Q92954-6|PRG4;nc|ENSG00000116690|Q92954-2|PRG4;ENSG00000116690|ENST00000445192|PRG4	nc|ENSG00000116690|Q92954-5|PRG4	nc|ENSG00000116690|Q92954-5|PRG4	MULTI-SECPEP	A375_MHC_IP_R1	1	365.3049011230469	3	364.545108	1090.61349	0.53456	0.00019487	-0.46436	-0.00016928	0.070195	2.5589E-05	364.54495884929423	48.248	0.4563	48.248	47.97	48.426	0					15	8	2	0	0	0	0.92227	1	17056	17056		5.0475	0.51865	1	2283800			54745	3419	39849	40166	53419	53419					0.07181120742939129
TLRNRDMSF	9	Unmodified	_TLRNRDMSF_					0	0	0			REV__SCN3A|p.G543R|1|0.16|ENSG00000153253|chr2:165146783-165146783|C/T|missense_variant	REV__SCN3A|p.G543R|1|0.16|ENSG00000153253|chr2:165146783-165146783|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	380.29608154296875	3	380.525719	1138.55533	0.36624	0.00013936	0.64644	0.00024599	1.0127	0.00038535	380.52603616799286	25.319	0.30524	25.319	25.154	25.46	0					6	5	2	0	0	0	0.78798	1	7321	7321		2.2828	0.19677	1	1640600	+		54746	27920	39850	40167	53420	53420					-0.008408841739765194
TLRNRVGG	8	Unmodified	_TLRNRVGG_					0	0	0		nc|ENSG00000015153|Q8IY57-4|YAF2	nc|ENSG00000015153|Q8IY57-4|YAF2	nc|ENSG00000015153|Q8IY57-4|YAF2	MULTI-MSMS	A375_MHC_IP_R1	1	437.15679931640625	2	436.756675	871.498798	0.022996	1.0044E-05	0.22102	9.6531E-05	0.24401	0.00010657	436.756668505678	110.21	0.40556	110.21	109.93	110.34	0					11	7	2	0	0	0	0.7779	1	40442	40442		2.5775	0	1	1451000			54747	14455	39851	40168	53421	53421					0.0579085605166938
TLRPEAKLSP	10	Unmodified	_TLRPEAKLSP_					0	0	0			REV__ENSG00000124203|ENST00000371030|ZNF831	REV__ENSG00000124203|ENST00000371030|ZNF831	MULTI-SECPEP	A375_MHC_IP_R2	2	555.7225952148438	2	556.327131	1110.63971	-0.92311	-0.00051355	-0.60949	-0.00033908	-1.5326	-0.00085263	556.3265673075236	71.113	0.55833	71.847	71.503	72.061	0.73421					13	10	2	0	0	0	0.8528	1	26974	26974		16.149	3.6176	1	2871800	+		54748	18283	39852	40169	53422	53422					0.08881389914404281
TLRPEAKLSP	10	Unmodified	_TLRPEAKLSP_					0	0	0			REV__ENSG00000124203|ENST00000371030|ZNF831	REV__ENSG00000124203|ENST00000371030|ZNF831	MULTI-MATCH	A375_MHC_IP_R1	1		2	556.327131	1110.63971	-0.32342	-0.00017993	-0.42852	-0.0002384	-0.75194	-0.00041833	556.3267369416939	71.823	0.45407	71.823	71.665	72.119	0	-0.012068	0.00010161	NaN	16.149	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1541100	+		54749	18283	39852	40169							0.08881389914404281
TLRPLRRRKEE	11	Unmodified	_TLRPLRRRKEE_					0	0	0			REV__nc|ENSG00000160460|Q9H254-4|SPTBN4	REV__nc|ENSG00000160460|Q9H254-4|SPTBN4	MULTI-SECPEP	A375_MHC_IP_R2	2	485.3551330566406	3	485.295186	1452.86373	-0.40848	-0.00019824	0.52479	0.00025468	0.11631	5.6444E-05	485.2950775342216	142.53	0.50946	142.56	142.38	142.89	0.030731					11	9	2	0	0	0	1.0012	1	55675	55675		1.1098	0.41209	1	1341000	+		54750	20172	39853	40170	53423	53423					0.15541098068410975
TLRRHAKR	8	Unmodified	_TLRRHAKR_					0	0	0		ENSG00000171443|ENST00000301073|ZNF524	ENSG00000171443|ENST00000301073|ZNF524	ENSG00000171443|ENST00000301073|ZNF524	MSMS	A375_MHC_IP_R2	2	519.3577270507812	2	519.325591	1036.63663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.844	1	66.582	66.082	67.082	0.73811								0	0	0	0.16876	1	24966	24966		5.7604	0	1				54751	7598	39854	40171	53424	53424					0.11977604370940753
TLRRLLALRRY	11	Unmodified	_TLRRLLALRRY_					0	0	0			REV__ATP13A1|p.G798Afs*55|1|0.25|ENSG00000105726|chr19:19649883-19649883|C/-|frameshift_variant	REV__ATP13A1|p.G798Afs*55|1|0.25|ENSG00000105726|chr19:19649883-19649883|C/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	716.3377075195312	2	715.956969	1429.89939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.89	1	103.89	103.39	104.39	0								0	0	0	0.16334	1	38149	38149		1.3295	0	1		+		54752	15475	39855	40172	53425	53425					0.2016318031605806
TLRRRWRR	8	Unmodified	_TLRRRWRR_					0	0	0			REV__ENST00000375344.7_1_9:97136898-97137102:+|nuORF	REV__ENST00000375344.7_1_9:97136898-97137102:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	399.9363098144531	3	400.583002	1198.72718	-0.40804	-0.00016346	0.9767	0.00039125	0.56866	0.00022779	400.5833830276676	24.745	0.25236	25.389	25.212	25.465	0.64368					10	4	3	0	0	0	0.972	1	8149	8149		4.897	2.811	1	3494600	+		54753	24127	39856	40173	53426	53426					0.1357607341919902
TLRSFCSCPF	10	Unmodified	_TLRSFCSCPF_					0	0	0		ENST00000592895.5_1_19:1985925-1986177:-|nuORF	ENST00000592895.5_1_19:1985925-1986177:-|nuORF	ENST00000592895.5_1_19:1985925-1986177:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	387.9119567871094	3	387.512422	1159.51544	-0.55965	-0.00021687	0.036149	1.4008E-05	-0.5235	-0.00020286	387.51241745241464	26.144	0.50733	26.804	26.602	27.109	0.65992					21	9	3	0	0	0	0.93961	1	8819	8819		3.3196	3.3196	1	4929300			54754	13818	39857	40174	53427	53427					-0.057941471689218815
TLRTPMYF	8	Unmodified	_TLRTPMYF_					0	0	0		ENSG00000180475|ENST00000316770|OR10Q1	ENSG00000180475|ENST00000316770|OR10Q1	ENSG00000180475|ENST00000316770|OR10Q1	MULTI-SECPEP	A375_MHC_IP_R1	1	515.2261962890625	2	514.76532	1027.51609	-0.60099	-0.00030937	4.0606	0.0020903	3.4597	0.0017809	515.2699658052022	47.185	0.20774	47.185	47.055	47.263	0					5	3	2	0	0	0	0.92867	1	16618	16618		8.7454	0	1	544340			54755	8299	39858	40175	53428	53428					0.003430155424211989
TLRVSRLRV	9	Unmodified	_TLRVSRLRV_					0	0	0		ENST00000371199.7_1_X:122993913-122993982:+|nuORF	ENST00000371199.7_1_X:122993913-122993982:+|nuORF	ENST00000371199.7_1_X:122993913-122993982:+|nuORF	MSMS	A375_MHC_IP_R1	1	367.27789306640625	3	367.24013	1098.69856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.444	1	53.444	52.944	53.944	0								0	0	0	0.15486	1	19053	19053		3.8763	1.5936	1				54756	11170	39859	40176	53429	53429					0.15315910999424887
TLRWRKRWRWR	11	Unmodified	_TLRWRKRWRWR_					0	0	0		ENST00000507209.5_1_4:187125362-187125452:+|nuORF	ENST00000507209.5_1_4:187125362-187125452:+|nuORF	ENST00000507209.5_1_4:187125362-187125452:+|nuORF	MSMS	A375_MHC_IP_R1	1	850.3963012695312	2	850.497659	1698.98076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.35	1	110.35	109.85	110.85	0								0	0	0	0.16358	1	40465	40465		0.30703	0.30703	1				54757	12862	39860	40177	53430	53430					0.15923300798635864
TLRWYRDRKKL	11	Unmodified	_TLRWYRDRKKL_					0	0	0		CADM4|p.E164K|1|0.39|ENSG00000105767|chr19:43626793-43626793|C/T|missense_variant	CADM4|p.E164K|1|0.39|ENSG00000105767|chr19:43626793-43626793|C/T|missense_variant	CADM4|p.E164K|1|0.39|ENSG00000105767|chr19:43626793-43626793|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	767.9527587890625	2	767.951884	1533.88921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.892	1	83.892	83.392	84.392	0								0	0	0	0.16334	1	30708	30708		1.3295	0	1				54758	283	39861	40178	53431	53431					0.14362572590812306
TLRYSLLLL	9	Unmodified	_TLRYSLLLL_					0	0	0		CYP2C9|p.A309S|1|0.24|ENSG00000138109|chr10:94972209-94972209|G/T|missense_variant	CYP2C9|p.A309S|1|0.24|ENSG00000138109|chr10:94972209-94972209|G/T|missense_variant	CYP2C9|p.A309S|1|0.24|ENSG00000138109|chr10:94972209-94972209|G/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	364.6105651855469	3	364.56562	1090.67503	0.64269	0.0002343	-0.3625	-0.00013216	0.28019	0.00010215	364.5654125009626	38.885	0.30441	38.885	38.78	39.085	0					7	5	2	0	0	0	0.77948	1	13218	13218		10.151	3.0488	1	1359500			54759	699	39862	40179	53432	53432					0.13332052442228814
TLRYSLLLL	9	Unmodified	_TLRYSLLLL_					0	0	0		CYP2C9|p.A309S|1|0.24|ENSG00000138109|chr10:94972209-94972209|G/T|missense_variant	CYP2C9|p.A309S|1|0.24|ENSG00000138109|chr10:94972209-94972209|G/T|missense_variant	CYP2C9|p.A309S|1|0.24|ENSG00000138109|chr10:94972209-94972209|G/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	364.9255065917969	3	364.56562	1090.67503	-0.17052	-6.2165E-05	-0.017909	-6.5289E-06	-0.18843	-6.8694E-05	364.89988769519266	37.788	0.35691	38.563	38.33	38.687	0.77451					15	6	3	0	0	0	0.67787	1	13876	13876		8.9762	2.3459	1	2276200			54760	699	39862	40179	53433	53433					0.13332052442228814
TLSAAAAL	8	Unmodified	_TLSAAAAL_					0	0	0			REV__ENSG00000182472|ENST00000328867|CAPN12	REV__ENSG00000182472|ENST00000328867|CAPN12	MULTI-SECPEP	A375_MHC_IP_R2	2	717.181884765625	1	717.414131	716.406855	-0.68322	-0.00049015	-0.27697	-0.0001987	-0.96019	-0.00068885	717.4137558496791	84.154	0.51158	84.894	84.663	85.175	0.73962					14	9	2	0	0	0	0.85124	1	32084	32084		26.341	0	1	3385500	+		54761	21691	39863	40180	53434	53434					0.037307529146005436
TLSAHITVV	9	Unmodified	_TLSAHITVV_					0	0	0		ENSG00000176253|ENST00000641904|OR4K13	ENSG00000176253|ENST00000641904|OR4K13	ENSG00000176253|ENST00000641904|OR4K13	MULTI-SECPEP	A375_MHC_IP_R2	2	470.16839599609375	2	470.776742	939.538931	-0.67927	-0.00031978	-0.12228	-5.7569E-05	-0.80155	-0.00037735	470.77645192605905	48.789	0.35716	49.546	49.282	49.639	0.75737					9	6	2	0	0	0	0.76187	1	18339	18339		11.64	4.3511	1	1190400			54762	8012	39864	40181	53435	53435					0.0667435793156983
TLSCATEPDCC	11	Unmodified	_TLSCATEPDCC_					0	0	0			REV__ENST00000602865.1_1_1:2282646-2283036:-|nuORF	REV__ENST00000602865.1_1_1:2282646-2283036:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	381.900146484375	3	381.476937	1141.40898	-0.32089	-0.00012241	-1.408	-0.00053712	-1.7289	-0.00065954	381.4763362387795	19.155	0.25153	19.758	19.633	19.884	0.60308					7	4	2	0	0	0	0.99921	1	5841	5841		0.45452	0	1	1258800	+		54763	26520	39865	40182	53436	53436					-0.15606690516392518
TLSCPCVHAW	10	Unmodified	_TLSCPCVHAW_					0	0	0		ENST00000397637.5_1_21:48055989-48056112:+|nuORF	ENST00000397637.5_1_21:48055989-48056112:+|nuORF	ENST00000397637.5_1_21:48055989-48056112:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	559.2235717773438	2	558.751887	1115.48922	-0.69864	-0.00039037	0.84439	0.0004718	0.14575	8.1437E-05	558.7521329606968	105.65	0.50914	106.41	106.17	106.68	0.75977					16	9	2	0	0	0	0.51963	3	39945	39945;39976;39990		26.884	20.454	1	1361000			54764	11507	39866	40183	53437;53438;53439	53437					-0.06390416340423144
TLSCVESFIL	10	Unmodified	_TLSCVESFIL_					0	0	0			REV__CMTR2|p.L559V|1|0.37|ENSG00000180917|chr16:71284246-71284246|A/C|missense_variant	REV__CMTR2|p.L559V|1|0.37|ENSG00000180917|chr16:71284246-71284246|A/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	557.840576171875	2	556.288825	1110.5631	-0.70267	-0.00039089	0.3874	0.00021551	-0.31527	-0.00017538	556.2891581027225	84.111	1.0131	84.111	83.583	84.596	0					55	19	4	0	0	0	0.6806	1	30759	30759		14.838	2.3067	1	16822000	+		54765	15806	39867	40184	53440	53440					0.01223830302933493
TLSDIMVSL	9	Oxidation (M)	_TLSDIM(Oxidation (M))VSL_		TLSDIM(1)VSL		TLSDIM(96)VSL	0	0	1		nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	MULTI-MSMS	A375_MHC_IP_R1	1	498.1598205566406	2	497.759901	993.505248	-0.33866	-0.00016857	0.3988	0.00019851	0.06014	2.9935E-05	497.7599650126894	102.69	0.96455	102.69	102.4	103.37	0					36	18	3	0	0	0	0.010037	1	37743	37743		96.285	38.813	1	2719700			54766	14622	39868	40185	53441	53441		469			0.008235683775069447
TLSDIMVSL	9	Oxidation (M)	_TLSDIM(Oxidation (M))VSL_		TLSDIM(1)VSL		TLSDIM(71)VSL	0	0	1		nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	MULTI-MSMS	A375_MHC_IP_R1	1	995.204833984375	1	994.512525	993.505248	0.25778	0.00025636	-0.2733	-0.0002718	-0.015524	-1.5439E-05	994.5120620863189	102.78	0.9621	102.78	102.15	103.12	0					31	18	2	0	0	0	0.034481	1	37871	37871		71.134	33.16	1	3926100			54767	14622	39868	40185	53442	53442		469			0.008235683775069447
TLSDIMVSL	9	Oxidation (M)	_TLSDIM(Oxidation (M))VSL_		TLSDIM(1)VSL		TLSDIM(55)VSL	0	0	1		nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	MULTI-SECPEP	A375_MHC_IP_R2	2	498.15972900390625	2	497.759901	993.505248	-0.47028	-0.00023409	-0.23721	-0.00011807	-0.70749	-0.00035216	497.7597992038069	102.03	0.91675	102.79	102.41	103.33	0.76428					25	17	2	0	0	0	0.1277	1	38644	38644		54.774	14.816	1	3176200			54768	14622	39868	40185	53443	53443		469			0.008235683775069447
TLSDIMVSL	9	Oxidation (M)	_TLSDIM(Oxidation (M))VSL_					0	0	1		nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	MULTI-MATCH	A375_MHC_IP_R2	2		1	994.512525	993.505248	0.042627	4.2393E-05	-0.67542	-0.00067171	-0.63279	-0.00062932	994.5122489819441	102.03	0.55914	102.79	102.51	103.07	0.76428	0.0050814	-0.00014403	NaN	71.134	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3250700			54769	14622	39868	40185				469			0.008235683775069447
TLSDIMVSL	9	Unmodified	_TLSDIMVSL_					0	0	0		nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	MULTI-MSMS	A375_MHC_IP_R2	2	490.16302490234375	2	489.762443	977.510333	-0.50785	-0.00024873	1.2543	0.00061433	0.74649	0.0003656	489.7630230621949	126.31	0.35255	126.61	126.43	126.78	0.2951					10	6	2	0	0	0	0.0090669	1	49441	49441		100.37	36.135	1	4416800			54770	14622	39868	40186	53444	53444					0.020678722401157756
TLSDLRVYL	9	Unmodified	_TLSDLRVYL_					0	0	0		ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1	ENST00000488788.2_1_20:629360-656142:-|nuORF	ENST00000488788.2_1_20:629360-656142:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	540.7077026367188	2	540.308406	1078.60226	-0.6407	-0.00034617	-0.10035	-5.4222E-05	-0.74105	-0.00040039	540.3083217554557	99.739	2.3281	99.739	99.268	101.6	0					119	45	4	0	0	0	0.0098085	2	36746	36746;36962		114.2	35.474	1	75142000			54771	9985	39869	40187	53445;53446	53445					0.06610298648797652
TLSDLRVYL	9	Unmodified	_TLSDLRVYL_					0	0	0		ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1	ENST00000488788.2_1_20:629360-656142:-|nuORF	ENST00000488788.2_1_20:629360-656142:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	540.7081298828125	2	540.308406	1078.60226	-0.72064	-0.00038937	0.080726	4.3617E-05	-0.63992	-0.00034575	540.3083906133302	98.869	2.7003	99.629	99.15	101.85	0.75977					132	52	4	0	0	0	0.0092511	4	37603	37512;37603;37640;37815		110.55	50.479	1	77817000			54772	9985	39869	40187	53447;53448;53449;53450	53448					0.06610298648797652
TLSDPRVYL	9	Unmodified	_TLSDPRVYL_					0	0	0		SRXN1|p.L125P|1|0.25|ENSG00000271303|chr20:648754-648754|A/G|missense_variant	SRXN1|p.L125P|1|0.25|ENSG00000271303|chr20:648754-648754|A/G|missense_variant	SRXN1|p.L125P|1|0.25|ENSG00000271303|chr20:648754-648754|A/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	532.6925048828125	2	532.292756	1062.57096	-0.74469	-0.00039639	0.53163	0.00028298	-0.21306	-0.00011341	532.2935706724807	96.409	0.75885	97.162	96.808	97.566	0.75311					24	14	2	0	0	0	0.38603	1	36626	36626		25.399	4.9457	1	1427500			54773	29252	39870	40188	53451	53451					0.04217725614716983
TLSDPRVYL	9	Unmodified	_TLSDPRVYL_					0	0	0		SRXN1|p.L125P|1|0.25|ENSG00000271303|chr20:648754-648754|A/G|missense_variant	SRXN1|p.L125P|1|0.25|ENSG00000271303|chr20:648754-648754|A/G|missense_variant	SRXN1|p.L125P|1|0.25|ENSG00000271303|chr20:648754-648754|A/G|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	532.292756	1062.57096	-0.53225	-0.00028331	0.62485	0.00033261	0.092608	4.9294E-05	532.2932926944496	97.223	0.60545	97.223	96.985	97.59	0	0.030451	5.0576E-05	NaN	25.399	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1714400			54774	29252	39870	40188							0.04217725614716983
TLSDPRVYL	9	Unmodified	_TLSDPRVYL_					0	0	0		SRXN1|p.L125P|1|0.25|ENSG00000271303|chr20:648754-648754|A/G|missense_variant	SRXN1|p.L125P|1|0.25|ENSG00000271303|chr20:648754-648754|A/G|missense_variant	SRXN1|p.L125P|1|0.25|ENSG00000271303|chr20:648754-648754|A/G|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	532.292756	1062.57096	-0.74469	-0.00039639	0.53163	0.00028298	-0.21306	-0.00011341	532.2935706724807	96.409	0.75885	97.162	96.808	97.566	0.75311	-0.030451	-4.8671E-05	NaN	25.399	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1427500			54775	29252	39870	40188							0.04217725614716983
TLSDSGSSQH	10	Unmodified	_TLSDSGSSQH_					0	0	0		ENSG00000083093|ENST00000261584|PALB2	ENSG00000083093|ENST00000261584|PALB2	ENSG00000083093|ENST00000261584|PALB2	MSMS	A375_MHC_IP_R2	2	509.6821594238281	2	509.725435	1017.43632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.542	1	81.287	80.787	81.787	0.74474								0	0	0	0.15332	1	30579	30579		10.074	1.4806	1				54776	1770	39871	40189	53452	53452					-0.07170379597835108
TLSDTARISL	10	Unmodified	_TLSDTARISL_					0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MSMS	A375_MHC_IP_R2	2	359.4281311035156	3	359.536389	1075.58734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.615	1	64.356	63.856	64.856	0.74022								0	0	0	0.15531	1	24122	24122		1.7423	0	1		+		54777	16815	39872	40190	53453	53453					0.0525680678081244
TLSDVLDRV	9	Unmodified	_TLSDVLDRV_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;ENST00000461788.1_1_2:32740825-32744123:+|nuORF	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-SECPEP	A375_MHC_IP_R1	1	509.68243408203125	2	509.282389	1016.55022	-0.43593	-0.00022201	0.035654	1.8158E-05	-0.40027	-0.00020385	509.2823496233943	81.343	0.55608	81.343	81.151	81.707	0					21	10	3	0	0	0	0.14554	1	29739	29739		65.474	31.072	1	2298100			54778	3337	39873	40191	53454	53454					0.04261135235049096
TLSDVLDRV	9	Unmodified	_TLSDVLDRV_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;ENST00000461788.1_1_2:32740825-32744123:+|nuORF	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-SECPEP	A375_MHC_IP_R2	2	509.6821594238281	2	509.282389	1016.55022	-0.79261	-0.00040366	0.30212	0.00015387	-0.49049	-0.0002498	509.28257215461326	80.543	0.61152	81.288	81.062	81.673	0.74474					18	11	2	0	0	0	0.53098	1	30579	30579		27.223	4.487	1	2378600			54779	3337	39873	40191	53455	53455					0.04261135235049096
TLSEIKALL	9	Unmodified	_TLSEIKALL_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-SECPEP	A375_MHC_IP_R2	2	494.7074890136719	2	494.307875	986.601197	-0.3912	-0.00019337	-0.19033	-9.4082E-05	-0.58153	-0.00028745	494.3076429823849	90.937	1.9246	91.671	91.311	93.236	0.7345					67	37	3	0	0	0	0.03341	1	34633	34633		93.166	4.2623	1	3233700			54780	1529	39874	40192	53456	53456					0.10736084279915303
TLSEPNEVNL	10	Unmodified	_TLSEPNEVNL_					0	0	0		ZNF518B|p.Q694Rfs*78|1|0.18|ENSG00000178163|chr4:10444250-10444250|C/-|frameshift_variant;ENSG00000178163|ENST00000326756|ZNF518B	ZNF518B|p.Q694Rfs*78|1|0.18|ENSG00000178163|chr4:10444250-10444250|C/-|frameshift_variant	ZNF518B|p.Q694Rfs*78|1|0.18|ENSG00000178163|chr4:10444250-10444250|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	372.92462158203125	3	372.524149	1114.55062	0.41352	0.00015405	0.71782	0.0002674	1.1313	0.00042145	372.52435289017734	30.32	0.55806	31.039	30.759	31.317	0.71857					17	10	2	0	0	0	0.92227	1	10644	10644		2.8433	1.1954	1	3991300			54781	8139	39875	40193	53457	53457					-0.0020748983574776503
TLSERLWGL	9	Unmodified	_TLSERLWGL_					0	0	0		ENST00000498134.1_1_13:33528197-33528527:-|nuORF;ENST00000416399.2_1_10:120403290-120403707:+|nuORF;ENSG00000100216|ENST00000216034|TOMM22;ENST00000492561.1_1_22:39078186-39079843:+|nuORF	ENST00000498134.1_1_13:33528197-33528527:-|nuORF	ENST00000498134.1_1_13:33528197-33528527:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	538.2000732421875	2	537.800749	1073.58694	-0.7649	-0.00041136	0.66205	0.00035605	-0.10285	-5.5312E-05	537.8010375922066	95.36	1.4705	95.36	94.956	96.427	0					65	28	3	0	0	0	0.10495	1	35005	35005		74.2	38.073	1	12530000			54782	2135	39876	40194	53458	53458					0.0530943185160595
TLSERLWGL	9	Unmodified	_TLSERLWGL_					0	0	0		ENST00000498134.1_1_13:33528197-33528527:-|nuORF;ENST00000416399.2_1_10:120403290-120403707:+|nuORF;ENSG00000100216|ENST00000216034|TOMM22;ENST00000492561.1_1_22:39078186-39079843:+|nuORF	ENST00000498134.1_1_13:33528197-33528527:-|nuORF	ENST00000498134.1_1_13:33528197-33528527:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	538.2010498046875	2	537.800749	1073.58694	-0.6355	-0.00034177	0.4419	0.00023765	-0.1936	-0.00010412	537.8009421937783	94.512	1.1665	95.257	94.869	96.035	0.74474					57	22	4	0	0	0	0.062502	1	35860	35860		83.429	37.408	1	12471000			54783	2135	39876	40194	53459	53459					0.0530943185160595
TLSERPHVVV	10	Unmodified	_TLSERPHVVV_					0	0	0			REV__ENST00000407479.5_1_16:3712853-3713087:+|nuORF	REV__ENST00000407479.5_1_16:3712853-3713087:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	569.2007446289062	2	568.824755	1135.63496	-0.40781	-0.00023197	-0.73759	-0.00041956	-1.1454	-0.00065153	568.8243957578625	52.529	0.71022	52.529	52.186	52.897	0					32	13	4	0	0	0	0.48072	1	18826	18826		30.637	0	1	9138400	+		54784	24452	39877	40195	53460	53460					0.07256505771647426
TLSEVTNQL	9	Unmodified	_TLSEVTNQL_					0	0	0		ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MULTI-SECPEP	A375_MHC_IP_R1	1	503.16632080078125	2	502.766571	1003.51859	-0.57042	-0.00028679	0.71244	0.00035819	0.14202	7.1402E-05	502.7666767691614	66.387	1.5282	66.387	65.871	67.399	0					72	29	4	0	0	0	0.05755	1	23970	23970		61.357	9.0891	1	26608000			54785	7476	39878	40196	53461	53461					0.016971424811004
TLSEVTNQL	9	Unmodified	_TLSEVTNQL_					0	0	0		ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MULTI-SECPEP	A375_MHC_IP_R2	2	503.16644287109375	2	502.766571	1003.51859	-0.80979	-0.00040713	0.44618	0.00022433	-0.3636	-0.00018281	502.7665980624372	65.648	1.374	66.387	65.867	67.241	0.73811					72	25	4	0	0	0	0.021422	1	24799	24799		96.285	24.362	1	30440000			54786	7476	39878	40196	53462	53462					0.016971424811004
TLSFPCEGHC	10	Unmodified	_TLSFPCEGHC_					0	0	0			REV__ENSG00000184344|ENST00000329913|GDF3	REV__ENSG00000184344|ENST00000329913|GDF3	MSMS	A375_MHC_IP_R2	2	547.2020263671875	2	547.225702	1092.43685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.06	1	138.14	137.64	138.64	0.083969								0	0	0	0.15308	1	54157	54157		10.824	2.9138	1		+		54787	21809	39879	40197	53463	53463					-0.10566999474008298
TLSFRELQL	9	Unmodified	_TLSFRELQL_					0	0	0		NTRK3|p.L152F|1|0.24|ENSG00000140538|chr15:88147345-88147345|G/A|missense_variant	NTRK3|p.L152F|1|0.24|ENSG00000140538|chr15:88147345-88147345|G/A|missense_variant	NTRK3|p.L152F|1|0.24|ENSG00000140538|chr15:88147345-88147345|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	369.44451904296875	3	369.544996	1105.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.589	1	25.233	24.733	25.733	0.64368								0	0	0	0.15486	1	8100	8100		4.897	0	1				54788	15032	39880	40198	53464	53464					0.06457701023100526
TLSFWRLRG	9	Unmodified	_TLSFWRLRG_					0	0	0			REV__nc|ENSG00000089250|P29475-4|NOS1	REV__nc|ENSG00000089250|P29475-4|NOS1	MULTI-SECPEP	A375_MHC_IP_R1	1	378.6201477050781	3	379.217214	1134.62981	0.49613	0.00018814	-0.091836	-3.4826E-05	0.4043	0.00015332	379.21711472653584	51.594	0.71183	51.594	51.27	51.982	0					36	13	4	0	0	0	0.76106	1	18242	18242		6.1918	6.1918	1	8383800	+		54789	27132	39881	40199	53465	53465					0.06788246699670708
TLSGHASW	8	Unmodified	_TLSGHASW_					0	0	0		ENST00000559940.1_1_15:78578357-78578495:-|nuORF;ENST00000559332.1_1_15:78578005-78578462:-|nuORF;ENSG00000140395|ENST00000267973|SKIC8	ENST00000559940.1_1_15:78578357-78578495:-|nuORF	ENST00000559940.1_1_15:78578357-78578495:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	430.1086730957031	2	429.70886	857.403166	-0.19946	-8.5711E-05	-0.072028	-3.0951E-05	-0.27149	-0.00011666	429.70879926983736	33.234	0.60819	33.234	33.04	33.648	0					18	11	2	0	0	0	0.25559	1	10832	10832		77.984	45.867	1	3829100			54790	5150	39882	40200	53466	53466					-0.03123916859237852
TLSGHASW	8	Unmodified	_TLSGHASW_					0	0	0		ENST00000559940.1_1_15:78578357-78578495:-|nuORF;ENST00000559332.1_1_15:78578005-78578462:-|nuORF;ENSG00000140395|ENST00000267973|SKIC8	ENST00000559940.1_1_15:78578357-78578495:-|nuORF	ENST00000559940.1_1_15:78578357-78578495:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	430.1087646484375	2	429.70886	857.403166	-0.2521	-0.00010833	-0.075563	-3.247E-05	-0.32766	-0.0001408	429.70877271311826	32.451	0.45735	33.187	32.96	33.417	0.73692					15	8	3	0	0	0	0.34394	1	11568	11568		60.39	28.273	1	3481400			54791	5150	39882	40200	53467	53467					-0.03123916859237852
TLSGRPPMPE	10	Unmodified	_TLSGRPPMPE_					0	0	0			REV__ENSG00000174807|ENST00000311330|CD248	REV__ENSG00000174807|ENST00000311330|CD248	MULTI-SECPEP	A375_MHC_IP_R2	2	362.2816467285156	3	362.186703	1083.53828	-0.095768	-3.4686E-05	-2.41	-0.00087288	-2.5058	-0.00090756	362.18538096540203	27.513	0.25423	28.191	28.047	28.301	0.67857					6	4	2	0	0	0	0.8528	1	9430	9430		10.315	2.7063	1	769490	+		54792	21303	39883	40201	53468	53468					-0.00014804779789301392
TLSHFYSL	8	Unmodified	_TLSHFYSL_					0	0	0			REV__ENST00000559537.1_1_15:81245324-81281926:-|nuORF	REV__ENST00000559537.1_1_15:81245324-81281926:-|nuORF	MSMS	A375_MHC_IP_R1	1	484.18438720703125	2	484.247818	966.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.328	1	94.328	93.828	94.828	0								0	0	0	0.16876	1	34671	34671		18.135	0	1		+		54793	26158	39884	40202	53469	53469					-0.0034990399386742865
TLSHPAKFNK	10	Unmodified	_TLSHPAKFNK_					0	0	0			REV__ENST00000537905.5_1_11:71735188-71747007:-|nuORF	REV__ENST00000537905.5_1_11:71735188-71747007:-|nuORF	MSMS	A375_MHC_IP_R2	2	571.8258056640625	2	571.819473	1141.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.725	1	98.481	97.981	98.981	0.75586								0	0	0	0.15353	1	37088	37088		9.3831	0.78985	1		+		54794	25927	39885	40203	53470	53470					0.059245231172326385
TLSKIPAL	8	Unmodified	_TLSKIPAL_					0	0	0		nc|ENSG00000078018|P11137-4|MAP2	nc|ENSG00000078018|P11137-4|MAP2	nc|ENSG00000078018|P11137-4|MAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	422.1708984375	2	421.770929	841.527304	0.0084867	3.5794E-06	0.040124	1.6923E-05	0.048611	2.0503E-05	421.77084666860634	74.699	0.81154	74.699	74.349	75.16	0					21	15	3	0	0	0	0.24561	1	27192	27192		81.613	0	1	1784200			54795	14484	39886	40204	53471	53471					0.10020160908231901
TLSKNEVLY	9	Unmodified	_TLSKNEVLY_					0	0	0		ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-SECPEP	A375_MHC_IP_R2	2	534.19189453125	2	533.792589	1065.57063	-0.87227	-0.00046561	-0.30965	-0.00016529	-1.1819	-0.00063091	533.7921459803581	72.585	0.50792	73.32	73.022	73.53	0.7354					16	9	2	0	0	0	0.65527	1	27531	27531		22.736	10.496	1	2098200			54796	1420	39887	40205	53472	53472					0.04046305894848956
TLSKNEVLY	9	Unmodified	_TLSKNEVLY_					0	0	0		ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-MATCH	A375_MHC_IP_R1	1		2	533.792589	1065.57063	-0.66178	-0.00035325	1.2947	0.00069107	0.63287	0.00033782	533.7924949566612	73.269	0.45728	73.269	73.082	73.539	0	-0.025676	0.0013563	NaN	22.736	20	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2041100			54797	1420	39887	40205							0.04046305894848956
TLSKVSESSSM	11	Unmodified	_TLSKVSESSSM_					0	0	0			REV__nc|ENSG00000257923|P39880-6|CUX1	REV__nc|ENSG00000257923|P39880-6|CUX1	MULTI-MSMS	A375_MHC_IP_R2	2	578.3240966796875	2	578.281728	1154.5489	-0.2018	-0.0001167	-4.3129	-0.0024941	-4.5147	-0.0026108	578.2796072237553	74.082	0.40611	74.819	74.501	74.907	0.73751					11	7	2	0	0	0	0.69231	1	28072	28072		16.149	0.90062	1	1183700	+		54798	22894	39888	40206	53473	53473					-0.02218866916018669
TLSLPSGRQI	10	Unmodified	_TLSLPSGRQI_					0	0	0			REV__HYDIN|p.G4613R|1|0.21|ENSG00000157423|chr16:70832910-70832910|C/T|missense_variant	REV__HYDIN|p.G4613R|1|0.21|ENSG00000157423|chr16:70832910-70832910|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	536.6605224609375	2	536.31148	1070.60841	-0.78153	-0.00041915	-0.071129	-3.8147E-05	-0.85266	-0.00045729	536.3113554231618	133.48	1.2724	133.64	133.35	134.62	0.16487					41	24	2	0	0	0	0.92227	1	52424	52424		8.7454	0	1	3951700	+		54799	26771	39889	40207	53474	53474					0.07592816880332975
TLSLRPLL	8	Unmodified	_TLSLRPLL_					0	0	0		ENSG00000250799|ENST00000653904|PRODH2	ENSG00000250799|ENST00000653904|PRODH2	ENSG00000250799|ENST00000653904|PRODH2	MULTI-SECPEP	A375_MHC_IP_R1	1	457.19732666015625	2	456.797478	911.580402	-0.21543	-9.8406E-05	-0.06622	-3.0249E-05	-0.28165	-0.00012866	456.7974184201586	98.582	0.66231	98.582	98.151	98.813	0					16	12	2	0	0	0	0.90775	1	36226	36226		26.884	0	1	1744800			54800	9851	39890	40208	53475	53475					0.12107538690884212
TLSLSTKKLQ	10	Unmodified	_TLSLSTKKLQ_					0	0	0			REV__ENSG00000138375|ENST00000357276|SMARCAL1	REV__ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-MSMS	A375_MHC_IP_R1	1	374.30096435546875	3	373.564168	1117.67067	0.37625	0.00014055	1.1827	0.00044181	1.5589	0.00058236	373.5644634064379	28.671	0.91128	28.671	28.238	29.149	0					58	17	5	0	0	0	0.71619	1	9009	9009		5.0475	0.85802	1	116680000	+		54801	19090	39891	40209	53476	53476					0.11654543228655712
TLSNYVQVG	9	Unmodified	_TLSNYVQVG_					0	0	0			REV__ENSG00000134905|ENST00000257347|CARS2	REV__ENSG00000134905|ENST00000257347|CARS2	MSMS	A375_MHC_IP_R2	2	490.6760559082031	2	490.756007	979.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.15	1	41.924	41.424	42.424	0.77451								0	0	0	0.14714	1	15261	15261		26.268	2.2476	1		+		54802	18811	39892	40210	53477	53477					0.006891771722393969
TLSPGAQVPN	10	Unmodified	_TLSPGAQVPN_					0	0	0		ENST00000348335.6_1_17:3788988-3796337:-|nuORF	ENST00000348335.6_1_17:3788988-3796337:-|nuORF	ENST00000348335.6_1_17:3788988-3796337:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	982.8054809570312	1	983.515636	982.50836	-0.012354	-1.215E-05	-3.5198	-0.0034618	-3.5321	-0.0034739	983.5157878250504	130.51	0.20326	130.73	130.6	130.81	0.2142					5	3	2	0	0	0	0.77204	1	51325	51325		7.609	2.3121	1	17592000			54803	10918	39893	40211	53478	53478					0.016405795465288975
TLSPPSACTS	10	Unmodified	_TLSPPSACTS_					0	0	0			REV__ENSG00000123352|ENST00000552918|SPATS2	REV__ENSG00000123352|ENST00000552918|SPATS2	MSMS	A375_MHC_IP_R1	1	482.1688537597656	2	482.226225	962.437897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.029	1	45.029	44.529	45.529	0								0	0	0	0.15207	1	15737	15737		13.906	0.39817	1		+		54804	18238	39894	40212	53479	53479					-0.0448246183344736
TLSQPPTCM	9	Unmodified	_TLSQPPTCM_					0	0	0		ENST00000486098.1_1_21:44482232-44483209:-|nuORF	ENST00000486098.1_1_21:44482232-44483209:-|nuORF	ENST00000486098.1_1_21:44482232-44483209:-|nuORF	MSMS	A375_MHC_IP_R1	1	489.1820068359375	2	489.225171	976.435788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.77	1	28.77	28.27	29.27	0								0	0	0	0.1535	1	8920	8920		15.847	1.9411	1				54805	12579	39895	40213	53480	53480					-0.053372138429040206
TLSSGTFSSL	10	Unmodified	_TLSSGTFSSL_					0	0	0		ENST00000515035.5_1_5:149755479-149759349:+|nuORF	ENST00000515035.5_1_5:149755479-149759349:+|nuORF	ENST00000515035.5_1_5:149755479-149759349:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	499.98284912109375	2	500.253297	998.492041	-0.59222	-0.00029626	0.29071	0.00014543	-0.30151	-0.00015083	500.2534195327486	31.567	0.4599	32.296	32.087	32.547	0.72915					14	8	2	0	0	0	0.69172	1	11155	11155		13.906	13.906	1	1477600			54806	12944	39896	40214	53481	53481					-0.007265464102374608
TLSSGTFSSL	10	Unmodified	_TLSSGTFSSL_					0	0	0		ENST00000515035.5_1_5:149755479-149759349:+|nuORF	ENST00000515035.5_1_5:149755479-149759349:+|nuORF	ENST00000515035.5_1_5:149755479-149759349:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	500.253297	998.492041	-0.52225	-0.00026126	0.069354	3.4694E-05	-0.4529	-0.00022656	500.25324352518754	32.285	0.3583	32.285	32.075	32.434	0	-0.0054254	-6.1171E-05	NaN	13.906	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1716000			54807	12944	39896	40214							-0.007265464102374608
TLSSLESKDHL	11	Unmodified	_TLSSLESKDHL_					0	0	0		nc|ENSG00000129295|Q86X45-2|DNAAF11;ENSG00000129295|ENST00000620350|DNAAF11	nc|ENSG00000129295|Q86X45-2|DNAAF11	nc|ENSG00000129295|Q86X45-2|DNAAF11	MSMS	A375_MHC_IP_R1	1	615.30126953125	2	615.322242	1228.62993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.506	1	91.506	91.006	92.006	0								0	0	0	0.16138	1	33619	33619		11.495	0.67078	1				54808	4185	39897	40215	53482	53482					0.024761571183944397
TLSTFRNY	8	Unmodified	_TLSTFRNY_					0	0	0		nc|ENSG00000114115|P09455|RBP1;ENSG00000139194|ENST00000266560|RBP5;nc|ENSG00000114115|P09455-2|RBP1;nc|ENSG00000114115|P09455-3|RBP1;ENSG00000114115|ENST00000672186|RBP1	nc|ENSG00000114115|P09455|RBP1	nc|ENSG00000114115|P09455|RBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	501.65570068359375	2	501.256174	1000.49779	-0.69042	-0.00034608	0.20802	0.00010427	-0.4824	-0.0002418	501.2563386352177	55.398	1.0178	56.149	55.779	56.797	0.75075					24	19	2	0	0	0	0.91495	1	20989	20989		7.9102	0	1	1716000			54809	3198	39898	40216	53483	53483					-0.002434031079133092
TLSTLTLLLL	10	Unmodified	_TLSTLTLLLL_					0	0	0		ENSG00000168509|ENST00000336751|HJV	ENSG00000168509|ENST00000336751|HJV	ENSG00000168509|ENST00000336751|HJV	MULTI-SECPEP	A375_MHC_IP_R1	1	544.7516479492188	2	544.352283	1086.69001	-0.80547	-0.00043846	-0.24938	-0.00013575	-1.0549	-0.00057421	544.352114175697	131.98	0.55295	131.98	131.88	132.44	0					15	10	2	0	0	0	0.87163	1	50907	50907		19.257	12.534	1	5027600			54810	7313	39899	40217	53484	53484					0.15013499519591278
TLSTLTLLLL	10	Unmodified	_TLSTLTLLLL_					0	0	0		ENSG00000168509|ENST00000336751|HJV	ENSG00000168509|ENST00000336751|HJV	ENSG00000168509|ENST00000336751|HJV	MULTI-SECPEP	A375_MHC_IP_R2	2	544.7518310546875	2	544.352283	1086.69001	-0.78253	-0.00042597	-0.11119	-6.0529E-05	-0.89372	-0.0004865	544.3522160192863	131.77	0.65617	131.96	131.75	132.4	0.18953					16	12	2	0	0	0	0.78945	1	51848	51848		25.399	10.561	1	4798400			54811	7313	39899	40217	53485	53485					0.15013499519591278
TLSTPHIEI	9	Unmodified	_TLSTPHIEI_					0	0	0			REV__UGT2B7|p.Y77H|1|0.45|ENSG00000171234|chr4:69096749-69096749|T/C|missense_variant	REV__UGT2B7|p.Y77H|1|0.45|ENSG00000171234|chr4:69096749-69096749|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	506.17938232421875	2	505.779482	1009.54441	-0.32421	-0.00016398	1.0694	0.00054089	0.74521	0.00037691	505.7800556079692	57.237	0.5101	57.237	56.905	57.415	0					16	9	2	0	0	0	0.65246	1	20544	20544		10.824	0	1	2791500	+		54812	28948	39900	40218	53486	53486					0.04002036723386482
TLSTVIATV	9	Unmodified	_TLSTVIATV_					0	0	0		ENSG00000111676|ENST00000396684|ATN1;ATN1|p.Y875Lfs*5|1|0.41|ENSG00000111676|chr12:6938579-6938580|-/C|frameshift_variant	ENSG00000111676|ENST00000396684|ATN1	ENSG00000111676|ENST00000396684|ATN1	MULTI-MSMS	A375_MHC_IP_R2	2	904.9339599609375	1	904.534975	903.527698	-0.30328	-0.00027432	-0.18512	-0.00016745	-0.4884	-0.00044178	904.5347052194448	90.839	1.57	91.573	91.16	92.729	0.7345					58	30	3	0	0	0	0.010057	1	34465	34465		125.62	20.825	1	18134000			54813	3015	39901	40219	53487	53487					0.07207535837437717
TLSTVISKV	9	Unmodified	_TLSTVISKV_					0	0	0		ENSG00000174197|ENST00000703841|MGA;MGA|p.K1567Yfs*16|1|0.2|ENSG00000174197|chr15:41742656-41742663|CAGAAGTT/-|frameshift_variant;MGA|p.V1809Afs*7|1|0.16|ENSG00000174197|chr15:41748847-41748863|TTGTCCAGCTTCTACCT/-|frameshift_variant	ENSG00000174197|ENST00000703841|MGA	ENSG00000174197|ENST00000703841|MGA	MULTI-SECPEP	A375_MHC_IP_R1	1	474.6917724609375	2	474.292225	946.569897	-0.4205	-0.00019944	-0.010546	-5.002E-06	-0.43105	-0.00020444	474.29212481139666	56.965	0.9181	56.965	56.65	57.568	0					30	17	2	0	0	0	0.30133	1	20405	20405		43.982	14.141	1	3552200			54814	7862	39902	40220	53488	53488					0.09447511245809892
TLSTVISKV	9	Unmodified	_TLSTVISKV_					0	0	0		ENSG00000174197|ENST00000703841|MGA;MGA|p.K1567Yfs*16|1|0.2|ENSG00000174197|chr15:41742656-41742663|CAGAAGTT/-|frameshift_variant;MGA|p.V1809Afs*7|1|0.16|ENSG00000174197|chr15:41748847-41748863|TTGTCCAGCTTCTACCT/-|frameshift_variant	ENSG00000174197|ENST00000703841|MGA	ENSG00000174197|ENST00000703841|MGA	MULTI-SECPEP	A375_MHC_IP_R2	2	474.69219970703125	2	474.292225	946.569897	-0.76933	-0.00036489	-0.017064	-8.0932E-06	-0.78639	-0.00037298	474.2921695663838	55.954	1.4274	56.704	56.388	57.815	0.75015					40	27	3	0	0	0	0.53098	1	21138	21138		27.223	2.2323	1	4130300			54815	7862	39902	40220	53489	53489					0.09447511245809892
TLSVGRYL	8	Unmodified	_TLSVGRYL_					0	0	0			REV__ENST00000484058.1_1_X:118540546-118586853:+|nuORF	REV__ENST00000484058.1_1_X:118540546-118586853:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	455.1640625	2	454.763635	907.512717	-0.11758	-5.347E-05	1.1509	0.00052337	1.0333	0.0004699	454.7640876959414	68.782	0.76086	68.782	68.514	69.275	0					19	14	2	0	0	0	0.72008	1	24972	24972		28.487	5.3384	1	1544600	+		54816	16698	39903	40221	53490	53490					0.055260887600866226
TLSVGRYL	8	Unmodified	_TLSVGRYL_					0	0	0			REV__ENST00000484058.1_1_X:118540546-118586853:+|nuORF	REV__ENST00000484058.1_1_X:118540546-118586853:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	454.763635	907.512717	-0.11758	-5.347E-05	1.1509	0.00052337	1.0333	0.0004699	454.7640876959414	68.782	0.76086	68.782	68.514	69.275	0	0	0	NaN	28.487	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1544600	+		54817	16698	39903	40221							0.055260887600866226
TLSVLLCWV	9	Unmodified	_TLSVLLCWV_					0	0	0		ENSG00000204421|ENST00000375819|LY6G6C	ENSG00000204421|ENST00000375819|LY6G6C	ENSG00000204421|ENST00000375819|LY6G6C	MULTI-MSMS	A375_MHC_IP_R1	1	517.7196044921875	2	517.291171	1032.56779	-0.68456	-0.00035412	0.19562	0.00010119	-0.48894	-0.00025292	517.2912363406559	94.873	0.81634	94.873	94.394	95.211	0					37	15	3	0	0	0	0.46038	1	34991	34991		21.747	6.9084	1	13504000			54818	9442	39904	40222	53491	53491					0.05280759236347876
TLSVPHDIL	9	Unmodified	_TLSVPHDIL_					0	0	0			REV__AXDND1|p.G122R|1|0.43|ENSG00000162779|chr1:179370068-179370068|G/A|missense_variant	REV__AXDND1|p.G122R|1|0.43|ENSG00000162779|chr1:179370068-179370068|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	497.64910888671875	2	497.782025	993.549496	-0.62582	-0.00031152	0.19693	9.8027E-05	-0.4289	-0.0002135	497.78239524336595	62.384	0.55993	63.126	62.824	63.383	0.74263					14	10	2	0	0	0	0.4261	1	23567	23567		24.021	7.0783	1	1449400	+		54819	15491	39905	40223	53492	53492					0.052463405860066814
TLSVPHDIL	9	Unmodified	_TLSVPHDIL_					0	0	0			REV__AXDND1|p.G122R|1|0.43|ENSG00000162779|chr1:179370068-179370068|G/A|missense_variant	REV__AXDND1|p.G122R|1|0.43|ENSG00000162779|chr1:179370068-179370068|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	497.782025	993.549496	-0.32649	-0.00016252	0.22234	0.00011068	-0.10414	-5.184E-05	497.7822660785758	63.248	0.51093	63.248	63.018	63.529	0	0.060991	6.5779E-06	NaN	18.146	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1250800	+		54820	15491	39905	40223							0.052463405860066814
TLSVWFISW	9	Unmodified	_TLSVWFISW_					0	0	0			REV__ENST00000355947.6_1_7:99489545-99489743:-|nuORF	REV__ENST00000355947.6_1_7:99489545-99489743:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	569.6891479492188	2	569.800217	1137.58588	-0.35983	-0.00020503	0.2285	0.0001302	-0.13133	-7.4834E-05	570.3024067069891	76.278	0.25289	76.278	76.067	76.319	0					6	4	2	0	0	0	0.55359	1	27740	27740		28.487	13.649	1	423600	+		54821	23827	39906	40224	53493	53493					0.022592174826968403
TLTAKEKFKDR	11	Unmodified	_TLTAKEKFKDR_					0	0	0		nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-3|RYR3;RYR3|p.D3926Vfs*56|1|0.44|ENSG00000198838|chr15:33837756-33837757|-/TT|frameshift_variant	nc|ENSG00000198838|Q15413-2|RYR3	nc|ENSG00000198838|Q15413-2|RYR3	MULTI-MSMS	A375_MHC_IP_R2	2	446.9911804199219	3	446.257626	1335.75105	-0.65933	-0.00029423	0.088448	3.9471E-05	-0.57088	-0.00025476	446.5919577616652	19.564	0.50659	20.174	19.942	20.449	0.61029					22	9	3	0	0	0	0.73064	1	6050	6050		8.2864	0	1	1267200			54822	9343	39907	40225	53494	53494					0.09660404551686952
TLTANPLI	8	Unmodified	_TLTANPLI_					0	0	0			REV__ENSG00000112299|ENST00000367928|VNN1	REV__ENSG00000112299|ENST00000367928|VNN1	MULTI-MSMS	A375_MHC_IP_R2	2	422.15228271484375	2	421.752736	841.490919	-0.014715	-6.2062E-06	-0.52491	-0.00022138	-0.53962	-0.00022759	421.7525095571159	69.085	0.70929	69.82	69.474	70.184	0.73512					20	13	2	0	0	0	0.23604	1	26205	26205		64.236	0	1	1301700	+		54823	17724	39908	40226	53495	53495					0.06383284011531032
TLTDCVVVV	9	Unmodified	_TLTDCVVVV_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-SECPEP	A375_MHC_IP_R1	1	948.5729370117188	1	948.507045	947.499769	0.2767	0.00026245	-0.49123	-0.00046594	-0.21453	-0.00020349	948.5065507256923	107.77	0.96709	107.77	107.49	108.46	0					22	18	2	0	0	0	0.28475	1	39607	39607		48.346	18.121	1	2192000			54824	8108	39909	40227	53496	53496					0.023918895856922973
TLTDIEQKV	9	Unmodified	_TLTDIEQKV_					0	0	0		nc|ENSG00000116525|Q9BVG3-2|TRIM62;ENSG00000116525|ENST00000291416|TRIM62	nc|ENSG00000116525|Q9BVG3-2|TRIM62	nc|ENSG00000116525|Q9BVG3-2|TRIM62	MULTI-SECPEP	A375_MHC_IP_R1	1	524.1895751953125	2	523.790047	1045.56554	-0.39471	-0.00020674	1.6936	0.00088709	1.2989	0.00068035	523.7899689812017	51.163	0.65963	51.163	50.915	51.575	0					31	12	3	0	0	0	0.0575	1	18167	18167		76.825	10.368	1	4120700			54825	3403	39910	40228	53497	53497					0.04458002032242803
TLTDIEQKV	9	Unmodified	_TLTDIEQKV_					0	0	0		nc|ENSG00000116525|Q9BVG3-2|TRIM62;ENSG00000116525|ENST00000291416|TRIM62	nc|ENSG00000116525|Q9BVG3-2|TRIM62	nc|ENSG00000116525|Q9BVG3-2|TRIM62	MULTI-SECPEP	A375_MHC_IP_R2	2	524.1897583007812	2	523.790047	1045.56554	-0.67894	-0.00035562	2.8782	0.0015076	2.1993	0.001152	523.7899319627633	50.469	0.81043	51.224	50.904	51.715	0.75406					32	15	3	0	0	0	0.13244	1	18970	18970		67.838	27.888	1	4149100			54826	3403	39910	40228	53498	53498					0.04458002032242803
TLTDLRAVNAV	11	Unmodified	_TLTDLRAVNAV_					0	0	0		nc|ENSG855|P10266|ERVK-10_pol	nc|ENSG855|P10266|ERVK-10_pol	nc|ENSG855|P10266|ERVK-10_pol	MULTI-SECPEP	A375_MHC_IP_R2	2	391.2912902832031	3	391.559305	1171.65609	0.020437	8.0024E-06	0.66774	0.00026146	0.68818	0.00026946	391.5596563681448	43.947	0.20157	44.716	44.631	44.833	0.7691					5	3	2	0	0	0	0.9907	1	16413	16413		12.856	7.8084	1	1355300			54827	14972	39911	40229	53499	53499					0.07712471080526484
TLTDVAHEY	9	Unmodified	_TLTDVAHEY_					0	0	0		ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L;nc|ENSG00000119760|O94864-4|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	MULTI-MSMS	A375_MHC_IP_R1	1	525.1504516601562	2	524.750921	1047.48729	-0.61361	-0.00032199	0.036927	1.9377E-05	-0.57668	-0.00030261	524.7507644486651	46.706	0.7122	46.706	46.395	47.107	0					25	13	3	0	0	0	0.091096	1	16386	16386		52.268	18.166	1	3885200			54828	3619	39912	40230	53500	53500					-0.0345543055300368
TLTDVAHEY	9	Unmodified	_TLTDVAHEY_					0	0	0		ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L;nc|ENSG00000119760|O94864-4|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	MULTI-MSMS	A375_MHC_IP_R2	2	525.1509399414062	2	524.750921	1047.48729	-0.44929	-0.00023576	0.07175	3.7651E-05	-0.37754	-0.00019811	524.7508767287276	46.015	0.60513	46.78	46.503	47.108	0.76519					26	11	3	0	0	0	0.12592	1	17190	17190		46.021	20.622	1	5583600			54829	3619	39912	40230	53501	53501					-0.0345543055300368
TLTEEGVIKV	10	Unmodified	_TLTEEGVIKV_					0	0	0		nc|ENSG00000107937|Q9BZE4-3|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;GTPBP4|p.V613Gfs*4|1|0.3|ENSG00000107937|chr10:1017160-1017160|T/-|frameshift_variant;ENSG00000107937|ENST00000360803|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	MULTI-SECPEP	A375_MHC_IP_R1	1	544.6622314453125	2	544.813522	1087.61249	-0.55896	-0.00030453	-0.012094	-6.5888E-06	-0.57105	-0.00031112	544.8134209607507	61.651	0.66387	61.651	61.279	61.943	0					23	12	3	0	0	0	0.62001	1	22250	22250		33.445	21.95	1	3817400			54830	2770	39913	40231	53502	53502					0.07218861583396574
TLTEEGVIKV	10	Unmodified	_TLTEEGVIKV_					0	0	0		nc|ENSG00000107937|Q9BZE4-3|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;GTPBP4|p.V613Gfs*4|1|0.3|ENSG00000107937|chr10:1017160-1017160|T/-|frameshift_variant;ENSG00000107937|ENST00000360803|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	MULTI-SECPEP	A375_MHC_IP_R2	2	545.2130737304688	2	544.813522	1087.61249	-1.104	-0.00060145	-0.35086	-0.00019115	-1.4548	-0.00079261	544.813392140728	60.818	0.65971	61.563	61.109	61.769	0.74503					20	12	2	0	0	0	0.57412	1	23012	23012		37.075	23.169	1	3265400			54831	2770	39913	40231	53503	53503					0.07218861583396574
TLTEFVKTV	9	Unmodified	_TLTEFVKTV_					0	0	0		ENSG00000162618|ENST00000370742|ADGRL4	ENSG00000162618|ENST00000370742|ADGRL4	ENSG00000162618|ENST00000370742|ADGRL4	MULTI-SECPEP	A375_MHC_IP_R1	1	519.6970825195312	2	519.297507	1036.58046	-0.38083	-0.00019776	-0.21552	-0.00011192	-0.59635	-0.00030968	519.2973445529232	71.133	0.66386	71.133	70.902	71.565	0					24	12	2	0	0	0	0.035151	1	25841	25841		84.522	34.968	1	7659900			54832	6563	39914	40232	53504	53504					0.06363493900221329
TLTEFVKTV	9	Unmodified	_TLTEFVKTV_					0	0	0		ENSG00000162618|ENST00000370742|ADGRL4	ENSG00000162618|ENST00000370742|ADGRL4	ENSG00000162618|ENST00000370742|ADGRL4	MULTI-SECPEP	A375_MHC_IP_R2	2	519.697021484375	2	519.297507	1036.58046	-0.64073	-0.00033273	-0.26647	-0.00013838	-0.90721	-0.00047111	519.2973311679478	70.359	0.76019	71.093	70.743	71.503	0.73421					28	14	2	0	0	0	0.027055	1	26687	26687		81.915	32.361	1	8556400			54833	6563	39914	40232	53505	53505					0.06363493900221329
TLTGGPARY	9	Unmodified	_TLTGGPARY_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D	ENSG00000055609|ENST00000262189|KMT2C;ENSG00000167548|ENST00000301067|KMT2D	ENSG00000055609|ENST00000262189|KMT2C	MULTI-SECPEP	A375_MHC_IP_R1	1	467.96209716796875	2	468.250892	934.48723	-0.4197	-0.00019652	-0.010597	-4.9618E-06	-0.4303	-0.00020149	468.25078734600066	32.235	0.51237	32.235	31.921	32.434	0					15	9	2	0	0	0	0.76187	1	10294	10294		3.9444	0	1	1869000			54834	1271;7193	39915	40233	53506	53506					0.017366142376545213
TLTGKTITL	9	Unmodified	_TLTGKTITL_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000143947|ENST00000272317|RPS27A;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000598814.1_1_19:18682694-18684218:+|nuORF;ENST00000471772.6_1_2:55459960-55460558:+|nuORF;ENST00000463185.1_1_2:55459960-55460026:+|nuORF;ENST00000445497.1_1_2:149621139-149621370:-|nuORF;ENST00000453803.2_1_20:35677668-35677815:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-SECPEP	A375_MHC_IP_R1	1	474.69219970703125	2	474.292225	946.569897	-0.4434	-0.0002103	0.13911	6.5979E-05	-0.30429	-0.00014432	474.292264117791	54.679	0.86408	54.679	54.364	55.228	0					32	16	3	0	0	0	0.044425	1	19547	19547		96.936	40.758	1	4995900			54835	9678	39916	40234	53507	53507					0.09447511245809892
TLTGKTITL	9	Unmodified	_TLTGKTITL_					0	0	0		ENSG00000221983|ENST00000442744|UBA52;ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000143947|ENST00000272317|RPS27A;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000598814.1_1_19:18682694-18684218:+|nuORF;ENST00000471772.6_1_2:55459960-55460558:+|nuORF;ENST00000463185.1_1_2:55459960-55460026:+|nuORF;ENST00000445497.1_1_2:149621139-149621370:-|nuORF;ENST00000453803.2_1_20:35677668-35677815:+|nuORF	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-SECPEP	A375_MHC_IP_R2	2	474.6914978027344	2	474.292225	946.569897	-0.99971	-0.00047416	-0.16412	-7.7842E-05	-1.1638	-0.000552	474.29210323038967	53.743	0.87029	54.494	54.198	55.068	0.75105					24	16	3	0	0	0	0.10495	1	20332	20332		74.2	37.693	1	5289900			54836	9678	39916	40234	53508	53508					0.09447511245809892
TLTGSPFRSP	10	Unmodified	_TLTGSPFRSP_					0	0	0			REV__ENST00000361367.6_1_11:10772894-10774273:+|nuORF	REV__ENST00000361367.6_1_11:10772894-10774273:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	532.181640625	2	531.782556	1061.55056	-0.65029	-0.00034581	-1.2751	-0.0006781	-1.9254	-0.0010239	531.7828642388066	70.662	0.6084	71.397	70.895	71.503	0.73421					20	11	2	0	0	0	0.79457	1	26794	26794		26.268	9.1552	1	3130800	+		54837	23911	39917	40235	53509	53509					0.022245549549097632
TLTHVAFSGI	10	Unmodified	_TLTHVAFSGI_					0	0	0		ENSG00000214510|ENST00000398450|SPINK13	ENSG00000214510|ENST00000398450|SPINK13	ENSG00000214510|ENST00000398450|SPINK13	MULTI-SECPEP	A375_MHC_IP_R1	1	523.6875610351562	2	523.287474	1044.5604	-0.48741	-0.00025506	0.064001	3.3491E-05	-0.42341	-0.00022157	523.2874568307941	59.419	0.81244	59.419	58.99	59.803	0					42	15	3	0	0	0	0.83355	1	21337	21337		17.113	5.6182	1	6759700			54838	9618	39918	40236	53510	53510					0.039897429602888224
TLTKHEIIH	9	Unmodified	_TLTKHEIIH_					0	0	0		nc|ENSG00000081665|Q5JVG8-2|ZNF506;ENSG00000081665|ENST00000540806|ZNF506	nc|ENSG00000081665|Q5JVG8-2|ZNF506	nc|ENSG00000081665|Q5JVG8-2|ZNF506	MSMS	A375_MHC_IP_R2	2	364.6009216308594	3	364.545108	1090.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.344	1	29.022	28.522	29.522	0.67857								0	0	0	0.11948	1	9773	9773		26.268	4.7312	1				54839	1740	39919	40237	53511	53511					0.07181120742961866
TLTLGTFVYL	10	Unmodified	_TLTLGTFVYL_					0	0	0			REV__CHST5|p.A311V|1|0.37|ENSG00000135702|chr16:75529453-75529453|G/A|missense_variant	REV__CHST5|p.A311V|1|0.37|ENSG00000135702|chr16:75529453-75529453|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	564.7205200195312	2	564.320983	1126.62741	-0.2986	-0.00016851	0.089119	5.0292E-05	-0.20948	-0.00011822	564.3210333384575	88.592	0.61116	88.592	88.358	88.97	0					28	11	3	0	0	0	0.57563	1	32526	32526		32.305	0	1	13889000	+		54840	15788	39920	40238	53512	53512					0.06916353451356372
TLTLGTFVYL	10	Unmodified	_TLTLGTFVYL_					0	0	0			REV__CHST5|p.A311V|1|0.37|ENSG00000135702|chr16:75529453-75529453|G/A|missense_variant	REV__CHST5|p.A311V|1|0.37|ENSG00000135702|chr16:75529453-75529453|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	564.7208862304688	2	564.320983	1126.62741	-0.40455	-0.0002283	0.24186	0.00013648	-0.16269	-9.1811E-05	564.321229031566	87.801	0.6086	88.533	88.266	88.875	0.7318					36	11	5	0	0	0	0.69172	1	33385	33385		25.399	9.5521	1	10195000	+		54841	15788	39920	40238	53513	53513					0.06916353451356372
TLTLHERR	8	Unmodified	_TLTLHERR_					0	0	0			REV__ENSG00000187806|ENST00000341689|TMEM202	REV__ENSG00000187806|ENST00000341689|TMEM202	MSMS	A375_MHC_IP_R2	2	513.43115234375	2	513.296165	1024.57778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.659	1	78.402	77.902	78.902	0.74293								0	0	0	0.16876	1	29489	29489		18.135	0	1		+		54842	22050	39921	40239	53514	53514					0.06647083285952249
TLTLWVARL	9	Unmodified	_TLTLWVARL_					0	0	0			REV__ENSG00000128039|ENST00000264228|SRD5A3	REV__ENSG00000128039|ENST00000264228|SRD5A3	MSMS	A375_MHC_IP_R1	1	358.2818908691406	3	358.221965	1071.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.282	1	58.282	57.782	58.782	0								0	0	0	0.15486	1	20932	20932		5.2969	0	1		+		54843	18440	39922	40240	53515	53515					0.11110899127993434
TLTNIIHNL	9	Unmodified	_TLTNIIHNL_					0	0	0		ENSG00000128699|ENST00000392349|ORMDL1	ENSG00000128699|ENST00000392349|ORMDL1	ENSG00000128699|ENST00000392349|ORMDL1	MULTI-SECPEP	A375_MHC_IP_R2	2	520.2000732421875	2	519.800749	1037.58694	-0.66253	-0.00034438	-0.6329	-0.00032898	-1.2954	-0.00067336	519.8003241578008	82.83	0.65443	83.573	83.347	84.001	0.74293					21	12	2	0	0	0	0.63327	1	31475	31475		24.021	13.947	1	3711200			54844	4159	39923	40241	53516	53516					0.06965431851608628
TLTNVIHNL	9	Unmodified	_TLTNVIHNL_					0	0	0		ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	MULTI-SECPEP	A375_MHC_IP_R1	1	513.19287109375	2	512.792924	1023.57129	-0.40496	-0.00020766	0.1553	7.9638E-05	-0.24965	-0.00012802	512.7928723069606	70.831	0.97359	70.831	70.289	71.262	0					35	14	3	0	0	0	0.010874	1	25762	25762		114.2	58.025	1	10471000			54845	3840	39924	40242	53517	53517					0.0604514533456495
TLTNVIHNL	9	Unmodified	_TLTNVIHNL_					0	0	0		ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	MULTI-SECPEP	A375_MHC_IP_R2	2	513.1925048828125	2	512.792924	1023.57129	-0.684	-0.00035075	0.19075	9.7815E-05	-0.49325	-0.00025294	512.7928771464353	69.897	0.96613	70.632	70.233	71.2	0.73421					38	18	3	0	0	0	0.03341	1	26569	26569		74.2	32.36	1	10087000			54846	3840	39924	40242	53518	53518					0.0604514533456495
TLTQDRPPQ	9	Unmodified	_TLTQDRPPQ_					0	0	0			REV__ENSG00000196663|ENST00000359520|TECPR2	REV__ENSG00000196663|ENST00000359520|TECPR2	MSMS	A375_MHC_IP_R1	1	528.2163696289062	2	528.277638	1054.54072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.91	1	43.91	43.41	44.41	0								0	0	0	0.1535	1	15294	15294		15.847	0	1		+		54847	22219	39925	40243	53519	53519					0.015633669495173308
TLTQDVQRF	9	Unmodified	_TLTQDVQRF_					0	0	0		ENSG00000136928|ENST00000259455|GABBR2	ENSG00000136928|ENST00000259455|GABBR2	ENSG00000136928|ENST00000259455|GABBR2	MULTI-SECPEP	A375_MHC_IP_R1	1	370.2430725097656	3	369.864617	1106.57202	0.06105	2.258E-05	0.18011	6.6617E-05	0.24116	8.9197E-05	370.1992803274074	24.017	0.25364	24.017	23.838	24.092	0					6	4	2	0	0	0	0.71541	1	6749	6749		4.5289	0	1	1276400			54848	4840	39926	40244	53520	53520					0.0229993998361806
TLTQPRGLDP	10	Unmodified	_TLTQPRGLDP_					0	0	0			REV__ENST00000360612.4_1_22:50356808-50356883:+|nuORF	REV__ENST00000360612.4_1_22:50356808-50356883:+|nuORF	MSMS	A375_MHC_IP_R2	2	366.6010437011719	3	366.536501	1096.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.447	1	27.107	26.607	27.607	0.65992								0	0	0	0.15207	1	8938	8938		8.4443	0	1		+		54849	23897	39927	40245	53521	53521					0.04324226500671102
TLTRLLLLLW	10	Unmodified	_TLTRLLLLLW_					0	0	0			REV__ENST00000332780.3_1_3:49213230-49213359:+|nuORF	REV__ENST00000332780.3_1_3:49213230-49213359:+|nuORF	MSMS	A375_MHC_IP_R1	1	621.4785766601562	2	621.402641	1240.79073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.054	1	76.054	75.554	76.554	0								0	0	0	0.15591	1	27716	27716		1.6526	1.1279	1		+		54850	23641	39928	40246	53522	53522					0.17996576293103317
TLTSNIPEI	9	Unmodified	_TLTSNIPEI_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENST00000418334.5_1_1:160144048-160152563:+|nuORF;ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;ENSG00000132681|ENST00000368081|ATP1A4	nc|ENSG00000163399|P05023-3|ATP1A1;ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000105409|ENST00000648268|ATP1A3;ENSG00000132681|ENST00000368081|ATP1A4	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	A375_MHC_IP_R1	1	494.6715393066406	2	494.27149	986.528426	-0.13677	-6.7602E-05	-0.051912	-2.5659E-05	-0.18868	-9.3261E-05	494.27144667365644	92.403	0.71037	92.403	92.16	92.871	0					21	13	2	0	0	0	0.02559	1	33944	33944		78.728	22.551	1	5203900			54851	6659;4440;1048;2604	39929	40247	53523	53523					0.034623304864680904
TLTSNIPEI	9	Unmodified	_TLTSNIPEI_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENST00000418334.5_1_1:160144048-160152563:+|nuORF;ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;ENSG00000132681|ENST00000368081|ATP1A4	nc|ENSG00000163399|P05023-3|ATP1A1;ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000105409|ENST00000648268|ATP1A3;ENSG00000132681|ENST00000368081|ATP1A4	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	A375_MHC_IP_R2	2	494.6708679199219	2	494.27149	986.528426	-0.39937	-0.0001974	-0.18403	-9.0961E-05	-0.5834	-0.00028836	494.27131334724345	91.713	0.70951	92.448	92.122	92.831	0.7345					26	13	3	0	0	0	0.0096896	2	34857	34857;34905		110.67	31.947	1	6173700			54852	6659;4440;1048;2604	39929	40247	53524;53525	53524					0.034623304864680904
TLTTIVKRY	9	Unmodified	_TLTTIVKRY_					0	0	0		ENSG00000115271|ENST00000437150|GCA;ENST00000487445.6_1_2:163200677-163215720:+|nuORF	ENSG00000115271|ENST00000437150|GCA	ENSG00000115271|ENST00000437150|GCA	MULTI-SECPEP	A375_MHC_IP_R2	2	547.6974487304688	2	547.832049	1093.64954	-1.0616	-0.00058161	1.0545	0.00057767	-0.0071904	-3.9391E-06	547.8323035933762	49.717	0.3047	50.472	50.294	50.599	0.75406					8	5	2	0	0	0	0.52144	1	18627	18627		16.942	6.8684	1	1017000			54853	3292	39930	40248	53526	53526					0.10646577919806077
TLTTIVKRY	9	Unmodified	_TLTTIVKRY_					0	0	0		ENSG00000115271|ENST00000437150|GCA;ENST00000487445.6_1_2:163200677-163215720:+|nuORF	ENSG00000115271|ENST00000437150|GCA	ENSG00000115271|ENST00000437150|GCA	MULTI-MATCH	A375_MHC_IP_R1	1		2	547.832049	1093.64954	-0.54002	-0.00029584	0.81002	0.00044375	0.26999	0.00014791	548.3343999270023	50.709	0.2533	50.709	50.51	50.764	0	0.11852	-0.00018189	NaN	16.942	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1316800			54854	3292	39930	40248							0.10646577919806077
TLTTTYAHPRP	11	Unmodified	_TLTTTYAHPRP_					0	0	0		ENST00000470325.1_1_17:15231272-15234902:-|nuORF;ENSG00000125409|ENST00000395930|TEKT3	ENST00000470325.1_1_17:15231272-15234902:-|nuORF	ENST00000470325.1_1_17:15231272-15234902:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	419.32244873046875	3	419.891055	1256.65134	0.44246	0.00018579	-2.4462	-0.0010271	-2.0037	-0.00084134	419.89081651829076	45.225	0.96117	45.225	44.827	45.789	0					22	18	2	0	0	0	0.99625	1	15920	15920		1.2148	0.51716	1	1189900			54855	3958	39931	40249	53527	53527					0.03327586937757587
TLTVKIFNHF	10	Unmodified	_TLTVKIFNHF_					0	0	0			REV__nc|ENSG00000104814|Q92918|MAP4K1	REV__nc|ENSG00000104814|Q92918|MAP4K1	MULTI-SECPEP	A375_MHC_IP_R2	2	610.2427368164062	2	610.345323	1218.67609	-0.28923	-0.00017653	-0.10627	-6.4859E-05	-0.39549	-0.00024139	610.3454572787506	139.94	0.51265	140	139.8	140.32	0.059906					16	9	3	0	0	0	0.94516	1	54838	54838		3.5965	0.60125	1	4483200	+		54856	17340	39932	40250	53528	53528					0.07550266811131223
TLTVQLNKW	9	Unmodified	_TLTVQLNKW_					0	0	0			REV__IFT80|p.F308L|1|0.2|ENSG00000068885|chr3:160319793-160319793|A/T|missense_variant	REV__IFT80|p.F308L|1|0.2|ENSG00000068885|chr3:160319793-160319793|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	551.232177734375	2	551.816399	1101.61824	-0.41531	-0.00022918	0.06431	3.5487E-05	-0.351	-0.00019369	551.816400917784	49.963	0.51196	49.963	49.743	50.254	0					17	9	2	0	0	0	0.7911	1	17622	17622		7.2892	3.6927	1	1814900	+		54857	26778	39933	40251	53529	53529					0.07150004885693306
TLTVRRTK	8	Unmodified	_TLTVRRTK_					0	0	0		ENST00000443339.5_1_3:9475802-9506425:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;nc|ENSG00000168137|Q9C0A6-3|SETD5;ENSG00000168137|ENST00000402198|SETD5	ENST00000443339.5_1_3:9475802-9506425:+|nuORF	ENST00000443339.5_1_3:9475802-9506425:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	488.2084655761719	2	487.808908	973.603263	-0.55916	-0.00027276	0.29878	0.00014575	-0.26038	-0.00012702	487.80892630880703	135.77	1.6917	135.77	135.54	137.23	0					75	32	4	0	0	0	0.77624	1	52306	52306		8.5933	0	1	53849000			54858	7269	39934	40252	53530	53530					0.11540557808382346
TLTVRRTK	8	Unmodified	_TLTVRRTK_					0	0	0		ENST00000443339.5_1_3:9475802-9506425:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;nc|ENSG00000168137|Q9C0A6-3|SETD5;ENSG00000168137|ENST00000402198|SETD5	ENST00000443339.5_1_3:9475802-9506425:+|nuORF	ENST00000443339.5_1_3:9475802-9506425:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	488.2086486816406	2	487.808908	973.603263	-0.43693	-0.00021314	0.023831	1.1625E-05	-0.4131	-0.00020151	487.80881394904884	135.67	1.5377	135.8	135.6	137.14	0.13					79	29	5	0	0	0	0.77624	1	53310	53310		8.5933	0	1	53471000			54859	7269	39934	40252	53531	53531					0.11540557808382346
TLVAQNNSI	9	Unmodified	_TLVAQNNSI_					0	0	0		CHAT|p.S295N|1|0.5|ENSG00000070748|chr10:49625604-49625604|G/A|missense_variant	CHAT|p.S295N|1|0.5|ENSG00000070748|chr10:49625604-49625604|G/A|missense_variant	CHAT|p.S295N|1|0.5|ENSG00000070748|chr10:49625604-49625604|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	479.6483459472656	2	480.261456	958.50836	-0.38582	-0.00018529	-0.014626	-7.0243E-06	-0.40044	-0.00019232	480.26130842141424	103.92	0.81444	103.92	103.52	104.34	0					24	15	2	0	0	0	0.75466	1	38130	38130		4.3292	0	1	970730			54860	384	39935	40253	53532	53532					0.027445795465155243
TLVDEVFRI	9	Unmodified	_TLVDEVFRI_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	MULTI-MSMS	A375_MHC_IP_R1	1	546.7083740234375	2	546.308406	1090.60226	-0.47858	-0.00026145	0.068102	3.7204E-05	-0.41048	-0.00022425	546.3081917489989	118.48	0.65944	118.48	118.12	118.78	0					18	12	2	0	0	0	0.020264	1	43697	43697		90.135	38.505	1	34633000			54861	3510	39936	40254	53533	53533					0.06058298648804339
TLVDEVFRI	9	Unmodified	_TLVDEVFRI_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	MULTI-MSMS	A375_MHC_IP_R2	2	546.7078857421875	2	546.308406	1090.60226	-0.67184	-0.00036703	-0.11485	-6.2741E-05	-0.78669	-0.00042978	546.3082910643227	117.57	0.70768	118.18	117.84	118.54	0.60909					21	13	2	0	0	0	0.0066114	1	44503	44503		157.8	79.067	1	19658000			54862	3510	39936	40254	53534	53534					0.06058298648804339
TLVDFDNHL	9	Unmodified	_TLVDFDNHL_					0	0	0		ENST00000597291.1_1_16:85813316-85813502:-|nuORF;ENSG00000131148|ENST00000253457|EMC8	ENST00000597291.1_1_16:85813316-85813502:-|nuORF	ENST00000597291.1_1_16:85813316-85813502:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	536.9180908203125	2	537.266739	1072.51892	-0.84603	-0.00045454	-0.61175	-0.00032867	-1.4578	-0.00078321	537.2662537642697	78.241	0.40618	78.984	78.726	79.132	0.74293					10	7	2	0	0	0	0.75842	1	29705	29705		13.042	1.4022	1	1585400			54863	4312	39937	40255	53535	53535					-0.014434377990482972
TLVDFPLHL	9	Unmodified	_TLVDFPLHL_					0	0	0		nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	MULTI-MSMS	A375_MHC_IP_R1	1	528.19970703125	2	527.800217	1053.58588	-0.95064	-0.00050175	-0.42233	-0.0002229	-1.373	-0.00072465	527.8000998397207	124.16	0.45155	124.16	123.99	124.44	0					17	8	3	0	0	0	0.029064	1	46669	46669		97.075	39.603	1	27618000			54864	2935	39938	40256	53536	53536					0.06123217482695509
TLVDFPLHL	9	Unmodified	_TLVDFPLHL_					0	0	0		nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	MULTI-MSMS	A375_MHC_IP_R2	2	528.2000732421875	2	527.800217	1053.58588	-0.4937	-0.00026057	-0.5756	-0.0003038	-1.0693	-0.00056438	527.7997571616828	123.48	0.60535	123.86	123.63	124.24	0.3766					29	11	3	0	0	0	0.032333	1	47411	47411		81.613	24.142	1	45634000			54865	2935	39938	40256	53537	53537					0.06123217482695509
TLVEAIKQV	9	Unmodified	_TLVEAIKQV_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-SECPEP	A375_MHC_IP_R1	1	501.20556640625	2	500.8055	999.596446	-0.31042	-0.00015546	0.29352	0.000147	-0.0169	-8.4637E-06	500.8055783748124	63.133	1.0242	63.133	62.762	63.786	0					51	19	5	0	0	0	0.0082179	1	22777	22777		165.72	39.154	1	12425000			54866	6139	39939	40257	53538	53538					0.09663200137140393
TLVEAIKQV	9	Unmodified	_TLVEAIKQV_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-SECPEP	A375_MHC_IP_R2	2	501.2051696777344	2	500.8055	999.596446	-0.72631	-0.00036374	0.01192	5.9694E-06	-0.7144	-0.00035777	500.805434003892	62.311	1.0126	63.053	62.622	63.634	0.74263					42	19	3	0	0	0	0.0082179	1	23564	23564		165.72	39.154	1	9744900			54867	6139	39939	40257	53539	53539					0.09663200137140393
TLVEEERLRYL	11	Unmodified	_TLVEEERLRYL_					0	0	0		nc|ENSG00000277363|Q9C0H9-4|SRCIN1;nc|ENSG00000277363|Q9C0H9-2|SRCIN1;ENSG00000277363|ENST00000617146|SRCIN1	nc|ENSG00000277363|Q9C0H9-4|SRCIN1	nc|ENSG00000277363|Q9C0H9-4|SRCIN1	MULTI-SECPEP	A375_MHC_IP_R2	2	473.6972961425781	3	474.264669	1419.77218	-1.0192	-0.00048339	-0.086618	-4.108E-05	-1.1059	-0.00052447	474.59916600784624	52.609	0.30548	53.362	53.234	53.54	0.75225					9	5	2	0	0	0	0.99332	1	19823	19823		7.0371	0.80273	1	1785000			54868	10027	39940	40258	53540	53540					0.07908369860570019
TLVEIKQKF	9	Unmodified	_TLVEIKQKF_					0	0	0		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MSMS	A375_MHC_IP_R2	2	369.26068115234375	3	369.225375	1104.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.276	1	20.886	20.386	21.386	0.61029								0	0	0	0.15486	1	6298	6298		4.897	0	1				54869	7896	39941	40259	53541	53541					0.10615462062560255
TLVETLWK	8	Unmodified	_TLVETLWK_					0	0	0		ENSG00000132005|ENST00000254325|RFX1	ENSG00000132005|ENST00000254325|RFX1	ENSG00000132005|ENST00000254325|RFX1	MULTI-MSMS	A375_MHC_IP_R1	1	495.69744873046875	2	495.286943	988.559333	-0.6415	-0.00031773	0.10374	5.1381E-05	-0.53776	-0.00026635	495.28688265092865	134.09	0.25397	134.09	133.97	134.22	0					8	4	2	0	0	0	0.77624	1	51720	51720		8.5933	0	1	5466200			54870	4368	39942	40260	53542	53542					0.06459528591381059
TLVFFVKLLR	10	Unmodified	_TLVFFVKLLR_					0	0	0			REV__ENST00000564184.1_1_15:72455114-72459029:-|nuORF	REV__ENST00000564184.1_1_15:72455114-72459029:-|nuORF	MSMS	A375_MHC_IP_R2	2	412.6225280761719	3	412.600665	1234.78016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.825	1	27.485	26.985	27.985	0.65992								0	0	0	0.15541	1	9104	9104		1.5923	0	1		+		54871	26212	39943	40261	53543	53543					0.17216593638659106
TLVFLLLYY	9	Unmodified	_TLVFLLLYY_					0	0	0		ENSG00000188763|ENST00000344575|FZD9	ENSG00000188763|ENST00000344575|FZD9	ENSG00000188763|ENST00000344575|FZD9	MULTI-SECPEP	A375_MHC_IP_R2	2	381.9485168457031	3	382.226604	1143.65798	-0.16585	-6.3391E-05	0.23819	9.1043E-05	0.072345	2.7652E-05	382.22689438570023	32.648	1.1706	33.385	33.061	34.232	0.73692					34	21	3	0	0	0	0.78351	1	11846	11846		2.7352	0	1	4554400			54872	8931	39944	40262	53544	53544					0.09190131836430737
TLVGHTEAV	9	Unmodified	_TLVGHTEAV_					0	0	0		ENSG00000196981|ENST00000330689|WDR5B	ENSG00000196981|ENST00000330689|WDR5B	ENSG00000196981|ENST00000330689|WDR5B	MULTI-SECPEP	A375_MHC_IP_R1	1	464.1506042480469	2	463.750724	925.486896	-0.31003	-0.00014378	-0.20325	-9.4257E-05	-0.51328	-0.00023804	463.75070251676624	31.293	0.55617	31.293	31.009	31.565	0					16	10	3	0	0	0	0.040439	1	10008	10008		92.822	41.967	1	3137500			54873	9098	39945	40263	53545	53545					0.021171945177911766
TLVIYHRY	8	Unmodified	_TLVIYHRY_					0	0	0			REV__nc|ENSG00000115421|Q9BWT3-2|PAPOLG	REV__nc|ENSG00000115421|Q9BWT3-2|PAPOLG	MULTI-MSMS	A375_MHC_IP_R1	1	355.2608337402344	3	355.534431	1063.58147	-0.23499	-8.3546E-05	-2.1489	-0.00076399	-2.3838	-0.00084754	355.5334927726978	26.869	1.4625	26.869	26.221	27.684	0					17	7	3	0	0	0	0.77603	1	7994	7994		6.7232	0	1	2958200	+		54874	17884	39946	40264	53546	53546					0.05221753059799994
TLVKGEDISI	10	Unmodified	_TLVKGEDISI_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R2	2	359.272705078125	3	358.87289	1073.59684	-0.87178	-0.00031286	0.05995	2.1514E-05	-0.81183	-0.00029134	358.87285230109376	28.745	0.79804	29.443	29.234	30.032	0.69872					39	15	4	0	0	0	0.61179	1	10219	10219		19.987	0.36094	1	149100000	+		54875	19932	39947	40265	53547	53547					0.06298575066330159
TLVLIKVLDI	10	Unmodified	_TLVLIKVLDI_					0	0	0		nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;ENSG00000120327|ENST00000239449|PCDHB14	nc|ENSG00000120327|Q9Y5E9-2|PCDHB14	nc|ENSG00000120327|Q9Y5E9-2|PCDHB14	MSMS	A375_MHC_IP_R1	1	564.0046997070312	2	563.875925	1125.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.038	1	89.038	88.538	89.538	0								0	0	0	0.15531	1	32703	32703		6.7232	0	1				54876	3659	39948	40266	53548	53548					0.17945778790567601
TLVPEERTF	9	Unmodified	_TLVPEERTF_					0	0	0			REV__ENSG00000171132|ENST00000306156|PRKCE	REV__ENSG00000171132|ENST00000306156|PRKCE	MULTI-MSMS	A375_MHC_IP_R1	1	546.6903076171875	2	546.290214	1090.56587	-0.30333	-0.0001657	-0.231	-0.00012619	-0.53433	-0.0002919	546.290089925722	107.16	0.66544	107.16	106.98	107.65	0					20	12	3	0	0	0	0.38603	2	39365	39345;39365		25.399	9.5521	1	2047200	+		54877	21045	39949	40267	53549;53550	53550					0.02421421752092101
TLVPEERTF	9	Unmodified	_TLVPEERTF_					0	0	0			REV__ENSG00000171132|ENST00000306156|PRKCE	REV__ENSG00000171132|ENST00000306156|PRKCE	MULTI-MSMS	A375_MHC_IP_R2	2	546.6895751953125	2	546.290214	1090.56587	-0.82973	-0.00045328	-0.25642	-0.00014008	-1.0862	-0.00059335	546.2903826113775	106.35	0.55962	107.11	106.78	107.34	0.75977					20	10	3	0	0	0	0.58047	1	40224	40224		15.847	0	1	2406400	+		54878	21045	39949	40267	53551	53551					0.02421421752092101
TLVPEERTF	9	Unmodified	_TLVPEERTF_					0	0	0			REV__ENSG00000171132|ENST00000306156|PRKCE	REV__ENSG00000171132|ENST00000306156|PRKCE	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	546.290214	1090.56587	-0.82973	-0.00045328	-0.25642	-0.00014008	-1.0862	-0.00059335	546.2903826113775	106.35	0.55962	107.11	106.78	107.34	0.75977	-0.024365	-1.7818E-05	NaN	25.399	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2406400	+		54879	21045	39949	40267							0.02421421752092101
TLVPQGRTF	9	Unmodified	_TLVPQGRTF_					0	0	0			REV__ENSG00000154229|ENST00000413366|PRKCA	REV__ENSG00000154229|ENST00000413366|PRKCA	MULTI-SECPEP	A375_MHC_IP_R1	1	510.1875305175781	2	509.787641	1017.56073	-0.46453	-0.00023681	0.30619	0.00015609	-0.15834	-8.0719E-05	509.78790926912876	64.368	0.35472	64.368	64.191	64.546	0					14	6	3	0	0	0	0.60917	1	23311	23311		25.399	0	1	1650700	+		54880	19870	39950	40268	53552	53552					0.05265162680143476
TLVQDNIQW	9	Unmodified	_TLVQDNIQW_					0	0	0		ENSG00000123384|ENST00000243077|LRP1;ENST00000556356.1_1_12:57602422-57606335:+|nuORF	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-MSMS	A375_MHC_IP_R2	2	559.4323120117188	2	558.787838	1115.56112	-0.59427	-0.00033207	0.099828	5.5783E-05	-0.49445	-0.00027629	558.7878212819746	79.37	0.65739	80.114	79.796	80.453	0.74474					28	12	3	0	0	0	0.46038	1	30237	30237		21.747	0.15649	1	19039000			54881	3844	39951	40269	53553	53553					0.007965376093125087
TLVQQRSL	8	Unmodified	_TLVQQRSL_					0	0	0			REV__nc|ENSG00000170004|Q12873-3|CHD3	REV__nc|ENSG00000170004|Q12873-3|CHD3	MULTI-SECPEP	A375_MHC_IP_R2	2	472.1659851074219	2	472.779816	943.545079	-0.65869	-0.00031141	0.57221	0.00027053	-0.086479	-4.0886E-05	472.77983241847403	55.358	0.30357	56.109	55.984	56.287	0.75075					8	5	2	0	0	0	0.90775	1	20927	20927		14.838	0.93222	1	923970	+		54882	27349	39952	40270	53554	53554					0.07104876163089102
TLVRMAGH	8	Unmodified	_TLVRMAGH_					0	0	0			REV__ENST00000479374.1_1_1:201816429-201819601:+|nuORF	REV__ENST00000479374.1_1_1:201816429-201819601:+|nuORF	MSMS	A375_MHC_IP_R2	2	442.6405944824219	2	442.742179	883.469806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.74	1	108.5	108	109	0.75436								0	0	0	0.16876	1	40697	40697		2.5775	0	1		+		54883	22398	39953	40271	53555	53555					0.023409954310182002
TLVRQDEPFW	10	Unmodified	_TLVRQDEPFW_					0	0	0			REV__ENSG00000169174|ENST00000302118|PCSK9	REV__ENSG00000169174|ENST00000302118|PCSK9	MSMS	A375_MHC_IP_R1	1	646.1937255859375	2	645.827495	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.136	1	87.136	86.636	87.636	0								0	0	0	0.15372	1	31967	31967		8.7454	0.83525	1		+		54884	20913	39954	40272	53556	53556					0.0072018456346540916
TLVSPHEESIS	11	Unmodified	_TLVSPHEESIS_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.E4343Kfs*13|1|0.36|ENSG00000055609|chr7:152148900-152148900|C/-|frameshift_variant;KMT2C|p.Q2128Rfs*25|1|0.04|ENSG00000055609|chr7:152181476-152181477|CT/-|frameshift_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MSMS	A375_MHC_IP_R1	1	599.768798828125	2	599.801143	1197.58773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.238	1	86.238	85.738	86.738	0								0	0	0	0.16172	1	31617	31617		12.241	4.9514	1				54885	1271	39955	40273	53557	53557					-0.003158182899824169
TLVSQQLWG	9	Unmodified	_TLVSQQLWG_					0	0	0		ENSG00000132781|ENST00000456914|MUTYH;nc|ENSG00000132781|Q9UIF7-5|MUTYH;nc|ENSG00000132781|Q9UIF7-4|MUTYH;nc|ENSG00000132781|Q9UIF7-3|MUTYH;nc|ENSG00000132781|Q9UIF7-2|MUTYH;nc|ENSG00000132781|Q9UIF7|MUTYH;ENST00000462388.5_1_1:45797680-45798503:-|nuORF	ENSG00000132781|ENST00000456914|MUTYH	ENSG00000132781|ENST00000456914|MUTYH	MULTI-SECPEP	A375_MHC_IP_R2	2	515.6654052734375	2	516.279649	1030.54475	-0.8064	-0.00041633	-0.66618	-0.00034393	-1.4726	-0.00076026	516.2798527990581	62.625	0.81083	63.368	62.925	63.736	0.74263					21	15	2	0	0	0	0.49205	1	23721	23721		27.629	7.1752	1	734290			54886	4448	39956	40274	53558	53558					0.030694564432451443
TLVTGLASV	9	Unmodified	_TLVTGLASV_					0	0	0		ENSG00000171109|ENST00000471841|MFN1;nc|ENSG00000171109|Q8IWA4-3|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-MSMS	A375_MHC_IP_R1	1	860.9076538085938	1	860.50876	859.501483	-0.43024	-0.00037023	-0.17004	-0.00014632	-0.60028	-0.00051655	860.5085488920599	91.239	0.55646	91.239	91.048	91.604	0					15	10	2	0	0	0	0.064406	1	33615	33615		58.679	12.658	1	1758700			54887	7575	39957	40275	53559	53559					0.06611266665947824
TLVTGLASV	9	Unmodified	_TLVTGLASV_					0	0	0		ENSG00000171109|ENST00000471841|MFN1;nc|ENSG00000171109|Q8IWA4-3|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-MATCH	A375_MHC_IP_R2	2		1	860.50876	859.501483	-0.51899	-0.00044659	-1.065	-0.00091641	-1.584	-0.001363	860.5074447492965	90.477	0.5593	91.211	90.854	91.413	0.7345	-0.013857	-0.0007057	NaN	58.679	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2161900			54888	7575	39957	40275							0.06611266665947824
TLVTPFLLI	9	Unmodified	_TLVTPFLLI_					0	0	0		RTN4IP1|p.N307I|1|0.35|ENSG00000130347|chr6:106587749-106587749|T/A|missense_variant	RTN4IP1|p.N307I|1|0.35|ENSG00000130347|chr6:106587749-106587749|T/A|missense_variant	RTN4IP1|p.N307I|1|0.35|ENSG00000130347|chr6:106587749-106587749|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	509.0072326660156	2	508.823161	1015.63177	-0.64651	-0.00032896	-0.2564	-0.00013046	-0.90291	-0.00045942	508.8230797144158	134.18	0.20706	134.31	134.18	134.39	0.13901					5	3	2	0	0	0	0.65246	1	52771	52771		10.824	0	1	2127300			54889	29097	39958	40276	53560	53560					0.12457862664939512
TLVTTKIKKES	11	Unmodified	_TLVTTKIKKES_					0	0	0			REV__ENSG00000164615|ENST00000297156|CAMLG	REV__ENSG00000164615|ENST00000297156|CAMLG	MSMS	A375_MHC_IP_R2	2	624.7799682617188	2	624.382103	1246.74965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.275	1	88.008	87.508	88.508	0.733								0	0	0	0.16203	1	33190	33190		8.1555	2.4237	1		+		54890	20503	39959	40277	53561	53561					0.13614770462959314
TLVYHVVGV	9	Unmodified	_TLVYHVVGV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	A375_MHC_IP_R1	1	494.18768310546875	2	493.78711	985.559667	0.056884	2.8089E-05	0.59168	0.00029216	0.64856	0.00032025	493.787394524541	69.261	2.4414	69.261	68.666	71.108	0					149	47	5	0	0	0	0.001076	1	25108	25108		153.26	75.278	1	66895000			54891	8958	39960	40278	53562	53562					0.06630948311237717
TLVYHVVGV	9	Unmodified	_TLVYHVVGV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	A375_MHC_IP_R2	2	494.18743896484375	2	493.78711	985.559667	-0.38615	-0.00019067	0.78988	0.00039003	0.40373	0.00019936	493.7875037453423	68.362	2.6399	69.097	68.51	71.15	0.73511					153	51	5	0	0	0	0.0046892	2	25887	25887;26221		161.58	72.155	1	68497000			54892	8958	39960	40278	53563;53564	53563					0.06630948311237717
TLWALLLSV	9	Unmodified	_TLWALLLSV_					0	0	0		ENST00000479722.1_1_10:101373360-101379897:-|nuORF	ENST00000479722.1_1_10:101373360-101379897:-|nuORF	ENST00000479722.1_1_10:101373360-101379897:-|nuORF	MSMS	A375_MHC_IP_R1	1	508.3376770019531	2	508.312961	1014.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.764	1	68.764	68.264	69.264	0								0	0	0	0.15486	1	24942	24942		11.64	0.81637	1				54893	12483	39961	40279	53565	53565					0.10464692005143661
TLWCSVKGFC	10	Unmodified	_TLWCSVKGFC_					0	0	0		nc|ENSG00000151388|P58397-3|ADAMTS12;ENSG00000151388|ENST00000504830|ADAMTS12	nc|ENSG00000151388|P58397-3|ADAMTS12	nc|ENSG00000151388|P58397-3|ADAMTS12	MULTI-MSMS	A375_MHC_IP_R1	1	572.6698608398438	2	572.269912	1142.52527	-0.57484	-0.00032896	0.13969	7.994E-05	-0.43515	-0.00024902	572.2699674377197	124.58	0.8589	124.58	124.24	125.1	0					25	16	3	0	0	0	0.33265	1	46905	46905		38.176	2.0485	1	54033000			54894	5902	39962	40280	53566	53566					-0.04028959163520085
TLWCSVKGFC	10	Unmodified	_TLWCSVKGFC_					0	0	0		nc|ENSG00000151388|P58397-3|ADAMTS12;ENSG00000151388|ENST00000504830|ADAMTS12	nc|ENSG00000151388|P58397-3|ADAMTS12	nc|ENSG00000151388|P58397-3|ADAMTS12	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	572.269912	1142.52527	-0.57484	-0.00032896	0.13969	7.994E-05	-0.43515	-0.00024902	572.2699674377197	124.58	0.8589	124.58	124.24	125.1	0	0.17336	-0.00019711	NaN	38.176	25	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54033000			54895	5902	39962	40280							-0.04028959163520085
TLWCSVKGFC	10	Unmodified	_TLWCSVKGFC_					0	0	0		nc|ENSG00000151388|P58397-3|ADAMTS12;ENSG00000151388|ENST00000504830|ADAMTS12	nc|ENSG00000151388|P58397-3|ADAMTS12	nc|ENSG00000151388|P58397-3|ADAMTS12	MULTI-MATCH	A375_MHC_IP_R2	2		2	572.269912	1142.52527	-0.24751	-0.00014165	0.51368	0.00029396	0.26617	0.00015232	572.2702302386322	123.9	0.96215	124.23	123.94	124.9	0.32969	-0.17336	0.00023094	NaN	38.176	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35724000			54896	5902	39962	40280							-0.04028959163520085
TLWDSYLEV	9	Unmodified	_TLWDSYLEV_					0	0	0			REV__PADI2|p.P459L|1|0.36|ENSG00000117115|chr1:17075758-17075758|G/A|missense_variant	REV__PADI2|p.P459L|1|0.36|ENSG00000117115|chr1:17075758-17075758|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	564.1761474609375	2	563.276772	1124.53899	-0.38945	-0.00021937	-0.017374	-9.7862E-06	-0.40682	-0.00022915	563.2769581040372	117.18	0.70887	117.84	117.43	118.14	0.65962					31	13	3	0	0	0	0.58047	1	44446	44446		15.847	0	1	8334700	+		54897	17993	39963	40281	53567	53567					-0.018296868591050952
TLWELGYWLCY	11	Unmodified	_TLWELGYWLCY_					0	0	0		nc|ENSG00000168539|P11229-2|CHRM1;ENSG00000168539|ENST00000306960|CHRM1	nc|ENSG00000168539|P11229-2|CHRM1	nc|ENSG00000168539|P11229-2|CHRM1	MSMS	A375_MHC_IP_R2	2	723.7929077148438	2	723.841756	1445.66896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.62	1	125.91	125.41	126.41	0.2951								0	0	0	0.16249	1	49051	49051		5.7319	0	1				54898	7317	39964	40282	53568	53568					-0.03604833851591138
TLWGGLLRL	9	Unmodified	_TLWGGLLRL_					0	0	0		ENSG00000175348|ENST00000534025|TMEM9B	ENSG00000175348|ENST00000534025|TMEM9B	ENSG00000175348|ENST00000534025|TMEM9B	MULTI-SECPEP	A375_MHC_IP_R1	1	515.2160034179688	2	514.816202	1027.61785	-0.36089	-0.00018579	-0.10451	-5.3806E-05	-0.46541	-0.0002396	514.816197826801	126	0.20064	126	125.85	126.05	0					5	3	2	0	0	0	0.20645	1	48079	48079		56.177	18.026	1	10541000			54899	7953	39965	40283	53569	53569					0.10514629956514909
TLWGIQKEL	9	Unmodified	_TLWGIQKEL_					0	0	0		nc|ENSG00000134333|P00338-4|LDHA;ENST00000538451.1_1_11:18424358-18428825:+|nuORF;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;ENST00000397561.3_1_9:14921337-14921451:-|nuORF	nc|ENSG00000134333|P00338-4|LDHA	nc|ENSG00000134333|P00338-4|LDHA	MULTI-MSMS	A375_MHC_IP_R1	1	544.7105712890625	2	544.310949	1086.60735	-0.71977	-0.00039178	0.14645	7.9714E-05	-0.57332	-0.00031206	544.3108535083903	84.135	1.1672	84.135	83.685	84.852	0					63	22	4	0	0	0	0.0042961	1	30719	30719		136.39	88.643	1	38199000			54900	14610	39966	40284	53570	53570					0.06750602511419856
TLWGIQKEL	9	Unmodified	_TLWGIQKEL_					0	0	0		nc|ENSG00000134333|P00338-4|LDHA;ENST00000538451.1_1_11:18424358-18428825:+|nuORF;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;ENST00000397561.3_1_9:14921337-14921451:-|nuORF	nc|ENSG00000134333|P00338-4|LDHA	nc|ENSG00000134333|P00338-4|LDHA	MULTI-MATCH	A375_MHC_IP_R2	2		2	544.310949	1086.60735	-0.7861	-0.00042788	-0.03497	-1.9035E-05	-0.82107	-0.00044692	544.3108208742179	83.191	1.1712	83.931	83.595	84.766	0.73962	-0.10196	-0.00010136	NaN	136.39	50	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27505000			54901	14610	39966	40284							0.06750602511419856
TLWHLGYW	8	Unmodified	_TLWHLGYW_					0	0	0		ENSG00000184984|ENST00000383263|CHRM5	ENSG00000184984|ENST00000383263|CHRM5	ENSG00000184984|ENST00000383263|CHRM5	MULTI-SECPEP	A375_MHC_IP_R2	2	538.9351196289062	2	538.271627	1074.5287	-0.85386	-0.00045961	2.1147	0.0011383	1.2608	0.00067865	538.7742106319247	75.851	0.25475	76.591	76.385	76.64	0.74052					5	4	2	0	0	0	0.94479	1	28765	28765		8.5933	0	1	435420			54902	8624	39967	40285	53571	53571					-0.005582050030170649
TLWKKVTW	8	Unmodified	_TLWKKVTW_					0	0	0		ENST00000378993.5_1_X:29938112-29959773:+|nuORF	ENST00000378993.5_1_X:29938112-29959773:+|nuORF	ENST00000378993.5_1_X:29938112-29959773:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	355.27703857421875	3	354.542927	1060.60695	-0.53241	-0.00018876	0.066856	2.3703E-05	-0.46555	-0.00016506	354.54287015268494	57.652	0.81019	58.401	58.019	58.829	0.74894					31	15	3	0	0	0	0.74945	1	21760	21760		16.149	2.2431	1	10397000			54903	11321	39968	40286	53572	53572					0.07907227582222731
TLWNNLLKY	9	Unmodified	_TLWNNLLKY_					0	0	0			REV__ENSG00000204569|ENST00000376511|PPP1R10	REV__ENSG00000204569|ENST00000376511|PPP1R10	MULTI-SECPEP	A375_MHC_IP_R2	2	389.603515625	3	388.885241	1163.63389	-0.48941	-0.00019032	-1.6864	-0.00065582	-2.1758	-0.00084614	388.88433449055543	21.132	0.30314	21.751	21.525	21.828	0.61932					8	5	2	0	0	0	0.78348	1	6656	6656		0.20686	0	1	632980	+		54904	22525	39969	40287	53573	53573					0.058622914027409934
TLWPEVQKL	9	Unmodified	_TLWPEVQKL_					0	0	0		ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;ENST00000541294.1_1_18:33739943-33744659:+|nuORF	ENSG00000134759|ENST00000358232|ELP2	ENSG00000134759|ENST00000358232|ELP2	MULTI-MSMS	A375_MHC_IP_R2	2	557.466064453125	2	557.318774	1112.623	-0.68947	-0.00038426	0.08998	5.0148E-05	-0.59949	-0.00033411	557.3187953555699	88.334	1.4681	89.066	88.418	89.886	0.7318					79	28	4	0	0	0	0.53367	1	33749	33749		18.146	6.5061	1	10889000			54905	4605	39970	40288	53574	53574					0.07118889028470221
TLWQALSQH	9	Unmodified	_TLWQALSQH_					0	0	0			REV__ENST00000506123.5_1_5:54462490-54462676:+|nuORF	REV__ENST00000506123.5_1_5:54462490-54462676:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	362.27337646484375	3	361.857574	1082.55089	0.14453	5.23E-05	-0.28243	-0.0001022	-0.1379	-4.99E-05	361.85752139294954	19.929	0.30366	19.929	19.776	20.079	0					9	5	3	0	0	0	0.74412	1	5089	5089		6.6304	3.0433	1	591560	+		54906	25549	39971	40289	53575	53575					0.012919746747684258
TLWREIYVAYW	11	Unmodified	_TLWREIYVAYW_					0	0	0			REV__NDST4|p.H750Y|1|0.4|ENSG00000138653|chr4:114839416-114839416|G/A|missense_variant	REV__NDST4|p.H750Y|1|0.4|ENSG00000138653|chr4:114839416-114839416|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	500.666259765625	3	500.594238	1498.76089	-0.38091	-0.00019068	0.18009	9.0151E-05	-0.20082	-0.00010053	500.5943090196032	64.015	0.50671	64.015	63.735	64.242	0					15	9	2	0	0	0	0.73636	1	23098	23098		2.8433	0.59056	1	2881100	+		54907	27587	39972	40290	53576	53576					0.03145592557098098
TLWRFSFMWKL	11	Unmodified	_TLWRFSFMWKL_					0	0	0		ENST00000557401.5_1_14:75158793-75158889:-|nuORF	ENST00000557401.5_1_14:75158793-75158889:-|nuORF	ENST00000557401.5_1_14:75158793-75158889:-|nuORF	MSMS	A375_MHC_IP_R2	2	505.686767578125	3	505.60408	1513.79041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.241	1	76.981	76.481	77.481	0.74052								0	0	0	0.16336	1	28943	28943		1.2148	0	1				54908	13450	39973	40291	53577	53577					0.05406833301572078
TLWSEKYLCSE	11	Unmodified	_TLWSEKYLCSE_					0	0	0			REV__IQGAP2|p.K738Ifs*10|1|0.09|ENSG00000145703|chr5:76654234-76654244|AGAGCTATCTT/-|frameshift_variant	REV__IQGAP2|p.K738Ifs*10|1|0.09|ENSG00000145703|chr5:76654234-76654244|AGAGCTATCTT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	680.21826171875	2	679.818478	1357.6224	-0.57427	-0.0003904	0.067131	4.5637E-05	-0.50714	-0.00034476	679.8183166830778	83.911	0.46155	84.651	84.407	84.868	0.73962					18	8	3	0	0	0	0.72869	1	31915	31915		10.151	0.76745	1	2818800	+		54909	19486	39974	40292	53578	53578					-0.04210318473519692
TLWSLFRKKL	10	Unmodified	_TLWSLFRKKL_					0	0	0			REV__ENST00000357635.9_1_15:75192579-75192729:-|nuORF	REV__ENST00000357635.9_1_15:75192579-75192729:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	647.1890869140625	2	646.39789	1290.78123	-0.47832	-0.00030919	0.86738	0.00056067	0.38905	0.00025148	646.9012942484134	114.76	0.15114	115.45	115.32	115.47	0.68999					4	2	2	0	0	0	0.94363	1	43230	43230		1.1933	0	1	1606900	+		54910	23843	39975	40293	53579	53579					0.14746808007544132
TLWVDPYEV	9	Unmodified	_TLWVDPYEV_					0	0	0		ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2	ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	MULTI-MSMS	A375_MHC_IP_R1	1	1121.5982666015625	1	1121.55135	1120.54408	-0.24055	-0.00026979	-0.012399	-1.3906E-05	-0.25295	-0.0002837	1121.5511103463173	124.52	1.0576	124.52	124.19	125.25	0					52	20	4	0	0	0	0.0007967	1	46798	46798		197.17	129.82	1	659740000			54911	4518	39976	40294	53580	53580					-0.011373829964895776
TLWVDPYEV	9	Unmodified	_TLWVDPYEV_					0	0	0		ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2	ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	MULTI-MSMS	A375_MHC_IP_R1	1	561.6782836914062	2	561.279315	1120.54408	-0.75795	-0.00042542	-0.17054	-9.5722E-05	-0.9285	-0.00052115	561.2791553710621	124.62	1.2091	124.62	124.24	125.45	0					52	23	3	0	0	0	0.0014061	2	46833	46833;47335		149.99	92.523	1	224340000			54912	4518	39976	40294	53581;53582	53581					-0.011373829964895776
TLWVDPYEV	9	Unmodified	_TLWVDPYEV_					0	0	0		ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2	ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	MULTI-SECPEP	A375_MHC_IP_R1	1	560.7247924804688	2	561.279315	1120.54408	-0.35317	-0.00019823	-2.0985	-0.0011778	-2.4516	-0.0013761	561.7789825120504	125.81	0.35065	125.81	125.65	126	0					8	6	2	0	0	0	0.35487	1	48001	48001		36.127	17.981	1	4507000			54913	4518	39976	40294	53583	53583					-0.011373829964895776
TLWVDPYEV	9	Unmodified	_TLWVDPYEV_					0	0	0		ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2	ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	MULTI-MSMS	A375_MHC_IP_R2	2	561.6788330078125	2	561.279315	1120.54408	-0.58552	-0.00032864	0.13088	7.3462E-05	-0.45463	-0.00025518	561.2793088618765	123.88	1.466	124.21	123.89	125.35	0.32969					74	28	4	0	0	0	0.0014061	3	47659	47659;48022;48165		149.99	86.4	1	199510000			54914	4518	39976	40294	53584;53585;53586	53584					-0.011373829964895776
TLWVDPYEV	9	Unmodified	_TLWVDPYEV_					0	0	0		ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2	ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	MULTI-MSMS	A375_MHC_IP_R2	2	1121.91455078125	1	1121.55135	1120.54408	0.1379	0.00015466	0.78283	0.00087799	0.92073	0.0010326	1121.5517372058723	123.89	1.5166	124.22	123.84	125.35	0.32968					83	29	5	0	0	0	0.0064901	1	48007	48007		188.58	121.23	1	574630000			54915	4518	39976	40294	53587	53587					-0.011373829964895776
TLWVDPYEV	9	Unmodified	_TLWVDPYEV_					0	0	0		ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2	ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	MULTI-MATCH	A375_MHC_IP_R2	2		2	561.279315	1120.54408	-0.55893	-0.00031372	-0.07478	-4.1973E-05	-0.63371	-0.00035569	561.7807928848201	125.9	0.55817	126.2	125.87	126.43	0.2951	0.19259	0.00042279	NaN	49.933	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4723800			54916	4518	39976	40294							-0.011373829964895776
TLWVEEESY	9	Unmodified	_TLWVEEESY_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	A375_MHC_IP_R1	1	578.6632690429688	2	578.263862	1154.51317	0.054431	3.1475E-05	-0.69487	-0.00040182	-0.64043	-0.00037034	578.2632243364908	111.87	0.61037	111.87	111.62	112.23	0					22	11	3	0	0	0	0.75466	1	41003	41003		12.532	8.2023	1	2394000	+		54917	17007	39977	40295	53588	53588					-0.05790581101382486
TLWVEEESY	9	Unmodified	_TLWVEEESY_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	A375_MHC_IP_R2	2	578.6635131835938	2	578.263862	1154.51317	-0.18254	-0.00010556	-0.59051	-0.00034147	-0.77304	-0.00044702	578.7649938339257	83.312	0.45678	84.052	83.797	84.254	0.73962					15	8	2	0	0	0	0.69504	1	31663	31663		18.135	8.7519	1	3558300	+		54918	17007	39977	40295	53589	53589					-0.05790581101382486
TLWVYHPS	8	Unmodified	_TLWVYHPS_					0	0	0		ENSG00000139718|ENST00000604567|SETD1B;nc|ENSG00000139718|Q9UPS6-2|SETD1B	ENSG00000139718|ENST00000604567|SETD1B	ENSG00000139718|ENST00000604567|SETD1B	MULTI-SECPEP	A375_MHC_IP_R2	2	1001.8175048828125	1	1002.50434	1001.49707	0.12334	0.00012365	-2.5678	-0.0025742	-2.4444	-0.0024505	1002.5031349255206	117.94	0.35332	118.55	118.34	118.69	0.60909					9	6	2	0	0	0	0.972	1	44605	44605		1.8442	0	1	18854000			54919	5104	39978	40296	53590	53590					-0.0036219775696508805
TLWYRAPEV	9	Unmodified	_TLWYRAPEV_					0	0	0		ENSG00000135446|ENST00000257904|CDK4;nc|ENSG00000135446|P11802-2|CDK4;ENST00000473078.1_1_7:92300738-92355023:-|nuORF;ENSG00000105810|ENST00000424848|CDK6	ENSG00000135446|ENST00000257904|CDK4;ENST00000473078.1_1_7:92300738-92355023:-|nuORF	ENSG00000135446|ENST00000257904|CDK4	MULTI-MSMS	A375_MHC_IP_R1	1	567.1976318359375	2	567.800749	1133.58694	-0.38159	-0.00021667	1.6759	0.00095158	1.2943	0.00073491	567.8007873282327	75.938	1.0085	75.938	75.614	76.622	0					49	18	4	0	0	0	0.11638	1	27713	27713		47.732	24.996	1	10907000			54920	4684;2639	39979	40297	53591	53591					0.025494318515939085
TLWYRAPEV	9	Unmodified	_TLWYRAPEV_					0	0	0		ENSG00000135446|ENST00000257904|CDK4;nc|ENSG00000135446|P11802-2|CDK4;ENST00000473078.1_1_7:92300738-92355023:-|nuORF;ENSG00000105810|ENST00000424848|CDK6	ENSG00000135446|ENST00000257904|CDK4;ENST00000473078.1_1_7:92300738-92355023:-|nuORF	ENSG00000135446|ENST00000257904|CDK4	MULTI-MSMS	A375_MHC_IP_R2	2	567.1968994140625	2	567.800749	1133.58694	-0.40401	-0.0002294	0.62451	0.0003546	0.2205	0.0001252	567.8004434110442	75.179	1.4717	75.917	75.519	76.991	0.73751					55	28	4	0	0	0	0.074562	1	28571	28571		55.235	20.833	1	9545700			54921	4684;2639	39979	40297	53592	53592					0.025494318515939085
TLWYRPPEL	9	Unmodified	_TLWYRPPEL_					0	0	0		CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;nc|ENSG00000167258|Q9NYV4-3|CDK12;ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9;nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13	CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant;ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000065883|Q14004-2|CDK13	CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	587.7282104492188	2	587.816399	1173.61824	-0.17491	-0.00010282	0.32085	0.0001886	0.14593	8.5782E-05	587.816454271314	93.334	1.0691	93.334	92.922	93.991	0					32	20	2	0	0	0	0.52197	1	34414	34414		24.991	6.856	1	2407100			54922	351;1394;4817	39980	40298	53593	53593					0.038380048857106885
TLWYRPPEL	9	Unmodified	_TLWYRPPEL_					0	0	0		CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;nc|ENSG00000167258|Q9NYV4-3|CDK12;ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9;nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13	CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant;ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000065883|Q14004-2|CDK13	CDK12|p.Q1291Rfs*3|1|0.13|ENSG00000167258|chr17:39530709-39530709|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	588.2153930664062	2	587.816399	1173.61824	-0.49042	-0.00028828	-0.47981	-0.00028204	-0.97024	-0.00057032	587.8160079287638	92.626	0.961	93.365	92.836	93.797	0.73902					24	18	2	0	0	0	0.14368	1	35227	35227		38.615	18.161	1	2292600			54923	351;1394;4817	39980	40298	53594	53594					0.038380048857106885
TLYDSRLFV	9	Unmodified	_TLYDSRLFV_					0	0	0		nc|ENSG00000167632|Q96Q05-2|TRAPPC9;nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	MULTI-SECPEP	A375_MHC_IP_R1	1	557.7007446289062	2	557.300581	1112.58661	-0.77849	-0.00043385	0.23052	0.00012847	-0.54797	-0.00030538	557.300723180417	90.681	0.55967	90.681	90.387	90.946	0					17	10	2	0	0	0	0.67323	1	33344	33344		24.991	14.191	1	1878200			54924	14749	39981	40299	53595	53595					0.03482012131780721
TLYDSRLFV	9	Unmodified	_TLYDSRLFV_					0	0	0		nc|ENSG00000167632|Q96Q05-2|TRAPPC9;nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	MULTI-SECPEP	A375_MHC_IP_R2	2	557.6998901367188	2	557.300581	1112.58661	-0.66666	-0.00037153	0.26196	0.00014599	-0.40469	-0.00022554	557.3007225195797	89.856	0.71648	90.588	90.236	90.953	0.7318					25	13	3	0	0	0	0.40495	1	34180	34180		33.445	21.805	1	2444100			54925	14749	39981	40299	53596	53596					0.03482012131780721
TLYEAVREV	9	Unmodified	_TLYEAVREV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;RPL10A|p.L111Wfs*6|1|0.08|ENSG00000198755|chr6:35470196-35470196|T/-|frameshift_variant;ENST00000490335.4_1_6:35436211-35436651:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A;ENST00000467020.5_1_6:35436211-35436817:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	A375_MHC_IP_R1	1	540.689697265625	2	540.290214	1078.56587	-0.67292	-0.00036357	0.091299	4.9328E-05	-0.58162	-0.00031424	540.2902111147883	58.049	1.8295	58.049	57.618	59.448	0					82	35	4	0	0	0	0.0099638	2	20785	20785;21000		121.35	71.413	1	46314000			54926	9318;12272	39982	40300	53597;53598	53597					0.029734217520854145
TLYEAVREV	9	Unmodified	_TLYEAVREV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;RPL10A|p.L111Wfs*6|1|0.08|ENSG00000198755|chr6:35470196-35470196|T/-|frameshift_variant;ENST00000490335.4_1_6:35436211-35436651:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A;ENST00000467020.5_1_6:35436211-35436817:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	A375_MHC_IP_R2	2	540.689697265625	2	540.290214	1078.56587	-1.2128	-0.00065529	0.25804	0.00013942	-0.9548	-0.00051587	540.290286642526	57.193	1.5234	57.943	57.561	59.085	0.75015					81	29	4	0	0	0	0.042871	1	21806	21806		67.081	27.131	1	63406000			54927	9318;12272	39982	40300	53599	53599					0.029734217520854145
TLYEHNNEL	9	Unmodified	_TLYEHNNEL_					0	0	0		ENSG00000094914|ENST00000209873|AAAS;nc|ENSG00000094914|Q9NRG9-2|AAAS;ENST00000548880.1_1_12:53709415-53715282:-|nuORF	ENSG00000094914|ENST00000209873|AAAS	ENSG00000094914|ENST00000209873|AAAS	MULTI-MSMS	A375_MHC_IP_R1	1	567.1668701171875	2	566.767103	1131.51965	-0.18532	-0.00010503	-0.29285	-0.00016598	-0.47817	-0.00027101	566.7669501375082	35.598	1.3748	35.598	35.269	36.644	0					88	26	5	0	0	0	0.0092511	3	12021	11791;11808;12021		181.69	59.512	1	125980000			54928	2028	39983	40301	53600;53601;53602	53602					-0.0408464315000856
TLYEHNNEL	9	Unmodified	_TLYEHNNEL_					0	0	0		ENSG00000094914|ENST00000209873|AAAS;nc|ENSG00000094914|Q9NRG9-2|AAAS;ENST00000548880.1_1_12:53709415-53715282:-|nuORF	ENSG00000094914|ENST00000209873|AAAS	ENSG00000094914|ENST00000209873|AAAS	MULTI-MSMS	A375_MHC_IP_R2	2	567.1538696289062	2	566.767103	1131.51965	-0.59936	-0.0003397	-0.089857	-5.0928E-05	-0.68921	-0.00039062	566.7670955727237	34.792	1.5185	35.556	35.223	36.741	0.76338					95	29	5	0	0	0	0.094655	2	12869	12869;13016		51.63	20.993	1	120290000			54929	2028	39983	40301	53603;53604	53603					-0.0408464315000856
TLYENERW	8	Unmodified	_TLYENERW_					0	0	0			REV__ENST00000523321.5_1_8:95835614-95871872:+|nuORF	REV__ENST00000523321.5_1_8:95835614-95871872:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	555.6842041015625	2	555.764363	1109.51417	-1.1745	-0.00065274	-0.34941	-0.00019419	-1.5239	-0.00084692	555.7635641018226	57.142	0.30816	57.893	57.712	58.02	0.75015					7	5	2	0	0	0	0.972	1	21640	21640		13.508	5.5977	1	921560	+		54930	20531	39984	40302	53605	53605					-0.036203219417984656
TLYENERW	8	Unmodified	_TLYENERW_					0	0	0			REV__ENST00000523321.5_1_8:95835614-95871872:+|nuORF	REV__ENST00000523321.5_1_8:95835614-95871872:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	555.764363	1109.51417	-0.57541	-0.00031979	0.45992	0.00025561	-0.11549	-6.4184E-05	555.7642690647423	57.898	0.15203	57.898	57.822	57.974	0	0.0026101	0.00042996	NaN	13.508	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	716080	+		54931	20531	39984	40302							-0.036203219417984656
TLYGSQIKL	9	Unmodified	_TLYGSQIKL_					0	0	0		ENST00000562408.1_1_16:28128533-28137161:-|nuORF;nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6	ENST00000562408.1_1_16:28128533-28137161:-|nuORF	ENST00000562408.1_1_16:28128533-28137161:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	512.1975708007812	2	511.797675	1021.5808	-0.61549	-0.000315	0.38603	0.00019757	-0.22946	-0.00011744	511.7977222251376	65.886	0.81247	65.886	65.462	66.275	0					25	15	2	0	0	0	0.30133	1	23821	23821		51.415	3.8208	1	3590200			54932	7387	39985	40303	53606	53606					0.07086913620082669
TLYGSQIKL	9	Unmodified	_TLYGSQIKL_					0	0	0		ENST00000562408.1_1_16:28128533-28137161:-|nuORF;nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6	ENST00000562408.1_1_16:28128533-28137161:-|nuORF	ENST00000562408.1_1_16:28128533-28137161:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1975708007812	2	511.797675	1021.5808	-0.79167	-0.00040517	0.31623	0.00016184	-0.47544	-0.00024333	511.79777970799256	64.967	0.86413	65.706	65.308	66.172	0.73811					27	16	2	0	0	0	0.33896	1	24602	24602		47.594	11.088	1	3732000			54933	7387	39985	40303	53607	53607					0.07086913620082669
TLYIDRIWS	9	Unmodified	_TLYIDRIWS_					0	0	0		ENST00000518188.5_1_8:82586107-82591385:-|nuORF	ENST00000518188.5_1_8:82586107-82591385:-|nuORF	ENST00000518188.5_1_8:82586107-82591385:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	584.2133178710938	2	583.813856	1165.61316	-0.42521	-0.00024824	0.10088	5.8895E-05	-0.32433	-0.00018935	584.3154332823427	83.108	0.45387	83.848	83.595	84.049	0.73962					21	8	3	0	0	0	0.60917	1	31640	31640		25.399	7.253	1	4546100			54934	12970	39986	40304	53608	53608					0.036977010230884844
TLYKKWWLYKQ	11	Unmodified	_TLYKKWWLYKQ_					0	0	0			REV__ENSG00000164181|ENST00000508821|ELOVL7	REV__ENSG00000164181|ENST00000508821|ELOVL7	MULTI-SECPEP	A375_MHC_IP_R2	2	519.18701171875	3	519.62565	1555.85512	-0.86238	-0.00044812	-0.022596	-1.1742E-05	-0.88498	-0.00045986	519.9593333115945	65.73	0.25312	66.468	66.324	66.577	0.73812					7	4	2	0	0	0	1.0005	1	24919	24919		2.4348	1.22	1	1699800	+		54935	20463	39987	40305	53609	53609					0.0994273137921482
TLYLHHLDY	9	Unmodified	_TLYLHHLDY_					0	0	0			REV__ENSG00000083782|ENST00000261172|EPYC	REV__ENSG00000083782|ENST00000261172|EPYC	MULTI-MSMS	A375_MHC_IP_R2	2	588.2294311523438	2	587.798206	1173.58186	-0.43546	-0.00025596	-0.028649	-1.684E-05	-0.46411	-0.0002728	587.7979112098889	93.557	0.25232	94.302	94.16	94.412	0.74474					7	4	2	0	0	0	0.35581	1	35569	35569		26.884	7.5217	1	1134900	+		54936	16810	39988	40306	53610	53610					0.0020112798899845075
TLYLRVVRV	9	Unmodified	_TLYLRVVRV_					0	0	0		nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;nc|ENSG00000145868|Q6PIJ6-3|FBXO38;ENST00000509411.5_1_5:147774339-147778706:+|nuORF;ENST00000508326.5_1_5:147774339-147782111:+|nuORF	nc|ENSG00000145868|Q6PIJ6-2|FBXO38	nc|ENSG00000145868|Q6PIJ6-2|FBXO38	MULTI-SECPEP	A375_MHC_IP_R2	2	373.4803466796875	3	373.572998	1117.69716	0.56708	0.00021185	0.14968	5.5915E-05	0.71676	0.00026776	373.5730748352777	47.286	0.56093	48.048	47.817	48.378	0.76128					19	10	3	0	0	0	0.81166	1	17657	17657		1.0715	0	1	3114000			54937	5588	39989	40307	53611	53611					0.1430227691064374
TLYQLKHT	8	Unmodified	_TLYQLKHT_					0	0	0			REV__nc|ENSG00000069431|O60706|ABCC9	REV__nc|ENSG00000069431|O60706|ABCC9	MULTI-SECPEP	A375_MHC_IP_R2	2	501.6609802246094	2	502.282192	1002.54983	-0.61469	-0.00030875	0.13117	6.5883E-05	-0.48352	-0.00024287	502.28234053579627	67.444	0.76134	68.18	67.85	68.612	0.73631					24	14	2	0	0	0	0.87643	1	25553	25553		19.257	0	1	11770000	+		54938	16558	39990	40308	53612	53612					0.048657603058586574
TLYRLTVQN	9	Unmodified	_TLYRLTVQN_					0	0	0		nc|ENSG00000178385|Q6ZWE6-3|PLEKHM3;nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3;ENSG00000178385|ENST00000427836|PLEKHM3	nc|ENSG00000178385|Q6ZWE6-3|PLEKHM3	nc|ENSG00000178385|Q6ZWE6-3|PLEKHM3	MULTI-SECPEP	A375_MHC_IP_R1	1	369.5151672363281	3	369.876746	1106.60841	0.50106	0.00018533	-0.83645	-0.00030938	-0.33539	-0.00012405	369.87646796081674	35.582	0.81471	35.582	35.319	36.133	0					23	15	2	0	0	0	0.79713	1	11787	11787		1.9064	0.83491	1	7049200			54939	8155	39991	40309	53613	53613					0.059368168803075605
TLYRNNNPPA	10	Unmodified	_TLYRNNNPPA_					0	0	0		ENSG00000198765|ENST00000369522|SYCP1	ENSG00000198765|ENST00000369522|SYCP1	ENSG00000198765|ENST00000369522|SYCP1	MULTI-SECPEP	A375_MHC_IP_R1	1	387.25592041015625	3	387.2	1158.57817	-0.060313	-2.3353E-05	-0.76673	-0.00029688	-0.82704	-0.00032023	387.199876063877	26.019	0.81104	26.019	25.562	26.373	0					22	10	3	0	0	0	0.88918	1	7758	7758		11.518	0.99041	1	6666600			54940	9321	39992	40310	53614	53614					0.005224582151413415
TLYRYRSDLEI	11	Unmodified	_TLYRYRSDLEI_					0	0	0		nc|ENSG00000086717|O14829-5|PPEF1;nc|ENSG00000086717|O14829-2|PPEF1;nc|ENSG00000086717|O14829-3|PPEF1;ENSG00000086717|ENST00000470157|PPEF1	nc|ENSG00000086717|O14829-5|PPEF1	nc|ENSG00000086717|O14829-5|PPEF1	MULTI-MSMS	A375_MHC_IP_R2	2	715.7783203125	2	714.877716	1427.74088	-0.71423	-0.00051059	0.14294	0.00010218	-0.5713	-0.00040841	715.3790758805494	73.686	0.40767	74.421	74.091	74.499	0.73541					12	7	2	0	0	0	0.73078	1	27998	27998		8.1555	2.4237	1	2214900			54941	1845	39993	40311	53615	53615					0.04411796826502723
TLYSIAEFPI	10	Unmodified	_TLYSIAEFPI_					0	0	0			REV__nc|ENSG00000174844|Q6ZR08|DNAH12	REV__nc|ENSG00000174844|Q6ZR08|DNAH12	MULTI-SECPEP	A375_MHC_IP_R2	2	576.7078247070312	2	577.310615	1152.60668	-0.12289	-7.0946E-05	-3.667	-0.002117	-3.7899	-0.002188	577.311256854649	104.29	0.50872	105.05	104.75	105.26	0.76308					14	9	3	0	0	0	0.88918	1	39451	39451		8.7454	6.9012	1	789540	+		54942	27370	39994	40312	53616	53616					0.03647763071717236
TLYWYFHRWAF	11	Unmodified	_TLYWYFHRWAF_					0	0	0			REV__ENST00000440748.1_1_7:37415149-37415623:+|nuORF	REV__ENST00000440748.1_1_7:37415149-37415623:+|nuORF	MSMS	A375_MHC_IP_R1	1	530.6347045898438	3	530.594461	1588.76155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.625	1	63.625	63.125	64.125	0								0	0	0	0.16351	1	23002	23002		0.45452	0	1		+		54943	24799	39995	40313	53617	53617					-0.009275680032260425
TMADQIVTV	9	Oxidation (M)	_TM(Oxidation (M))ADQIVTV_		TM(1)ADQIVTV		TM(66)ADQIVTV	0	0	1		ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-MSMS	A375_MHC_IP_R1	1	497.1795349121094	2	497.2497	992.484847	-0.57975	-0.00028828	0.52104	0.00025909	-0.058711	-2.9194E-05	497.2498918692509	66.09	2.1404	66.09	65.411	67.552	0					69	41	2	0	0	0	0.04447	2	23851	23851;24102		66.457	18.111	1	2631000			54944	3392	39996	40314	53618;53619	53618		168			-0.011696022822889063
TMADQIVTV	9	Oxidation (M)	_TM(Oxidation (M))ADQIVTV_		TM(1)ADQIVTV		TM(96)ADQIVTV	0	0	1		ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-SECPEP	A375_MHC_IP_R1	1	496.6820983886719	2	497.2497	992.484847	-0.31099	-0.00015464	0.22561	0.00011219	-0.085376	-4.2453E-05	497.24977019287644	63.195	0.81783	63.195	62.711	63.529	0					44	15	4	0	0	0	0.04038	1	22833	22833		96.111	17.383	1	9726300			54945	3392	39996	40314	53620	53620		168			-0.011696022822889063
TMADQIVTV	9	Oxidation (M)	_TM(Oxidation (M))ADQIVTV_		TM(1)ADQIVTV		TM(48)ADQIVTV	0	0	1		ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-SECPEP	A375_MHC_IP_R2	2	497.64910888671875	2	497.2497	992.484847	-0.60706	-0.00030186	-0.042163	-2.0966E-05	-0.64923	-0.00032283	497.24958894395667	62.466	0.86023	63.209	62.724	63.584	0.74263					40	16	3	0	0	0	0.13064	1	23567	23567		47.749	14.963	1	10480000			54946	3392	39996	40314	53621	53621		168			-0.011696022822889063
TMADQIVTV	9	Unmodified	_TMADQIVTV_					0	0	0		ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-MSMS	A375_MHC_IP_R2	2	489.6517028808594	2	489.252243	976.489932	-0.53835	-0.00026339	-0.13683	-6.6945E-05	-0.67518	-0.00033033	489.2521014271922	80.04	0.86202	80.784	80.453	81.315	0.74474					38	16	3	0	0	0	0.018261	1	30348	30348		85.642	14.926	1	10027000			54947	3392	39996	40315	53622	53622					0.0007470158031992469
TMDIPGCLLY	10	Oxidation (M)	_TM(Oxidation (M))DIPGCLLY_		TM(1)DIPGCLLY		TM(48)DIPGCLLY	0	0	1		ENST00000460163.1_1_3:113775820-113785138:+|nuORF;ENST00000466050.5_1_3:113775696-113789591:+|nuORF;ENSG00000151576|ENST00000281273|QTRT2;nc|ENSG00000151576|Q9H974-4|QTRT2	ENST00000460163.1_1_3:113775820-113785138:+|nuORF	ENST00000460163.1_1_3:113775820-113785138:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	571.2111206054688	2	571.267035	1140.51952	-0.28313	-0.00016174	-1.1489	-0.00065635	-1.4321	-0.0008181	571.2633486643198	31.424	1.3708	31.424	30.653	32.024	0					78	26	4	0	0	0	0.20882	1	10197	10197		48.346	12.219	1	19956000			54948	5914	39997	40316	53623	53623		316			-0.04512102465855605
TMDNPTTTQY	10	Oxidation (M)	_TM(Oxidation (M))DNPTTTQY_		TM(1)DNPTTTQY		TM(95)DNPTTTQY	0	0	1		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	A375_MHC_IP_R1	1	594.6474609375	2	594.247886	1186.48122	-0.70712	-0.0004202	0.30732	0.00018262	-0.3998	-0.00023758	594.2481252683101	30.342	1.1106	30.342	30.049	31.16	0					51	21	4	0	0	0	0.0065506	1	9604	9604		94.909	61.464	1	44539000			54949	4016	39998	40317	53624	53624		207			-0.10456316846830305
TMDNPTTTQY	10	Oxidation (M)	_TM(Oxidation (M))DNPTTTQY_		TM(1)DNPTTTQY		TM(100)DNPTTTQY	0	0	1		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	A375_MHC_IP_R1	1	594.64794921875	2	594.247886	1186.48122	-0.47023	-0.00027943	0.017858	1.0612E-05	-0.45237	-0.00026882	594.2479037607292	31.967	2.1833	31.967	31.414	33.597	0					103	42	4	0	0	0	0.0069514	4	10182	10182;10431;10533;10670		104.48	75.403	1	9918100			54950	4016	39998	40317	53625;53626;53627;53628	53625		207			-0.10456316846830305
TMDNPTTTQY	10	Oxidation (M)	_TM(Oxidation (M))DNPTTTQY_		TM(1)DNPTTTQY		TM(110)DNPTTTQY	0	0	1		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	A375_MHC_IP_R2	2	594.6475830078125	2	594.247886	1186.48122	-0.95798	-0.00056928	0.36563	0.00021728	-0.59234	-0.000352	594.2481778518364	29.864	0.90936	30.563	30.236	31.145	0.69872					54	17	5	0	0	0	0.011657	1	10403	10403		114.5	90.707	1	66544000			54951	4016	39998	40317	53629	53629		207			-0.10456316846830305
TMDNPTTTQY	10	Oxidation (M)	_TM(Oxidation (M))DNPTTTQY_		TM(1)DNPTTTQY		TM(98)DNPTTTQY	0	0	1		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	A375_MHC_IP_R2	2	594.6475830078125	2	594.247886	1186.48122	-0.5889	-0.00034995	-0.080716	-4.7965E-05	-0.66961	-0.00039792	594.247953984915	31.804	1.9838	32.541	31.687	33.671	0.73691					97	38	3	0	0	0	0.0025034	4	11047	11047;11250;11306;11498		110.79	86.772	1	7285000			54952	4016	39998	40317	53630;53631;53632;53633	53630		207			-0.10456316846830305
TMDNPTTTQY	10	Unmodified	_TMDNPTTTQY_					0	0	0		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	A375_MHC_IP_R1	1	586.6502685546875	2	586.250428	1170.4863	-0.6308	-0.00036981	-0.067315	-3.9463E-05	-0.69812	-0.00040927	586.2504355207079	41.427	0.86844	41.427	41.063	41.932	0					37	16	3	0	0	0	0.006963	1	14250	14250		132.22	99.434	1	21334000			54953	4016	39998	40318	53634	53634					-0.09212012984221474
TMDNPTTTQY	10	Unmodified	_TMDNPTTTQY_					0	0	0		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-SECPEP	A375_MHC_IP_R2	2	586.6499633789062	2	586.250428	1170.4863	-0.73801	-0.00043266	0.084166	4.9342E-05	-0.65384	-0.00038332	586.2504719894027	40.772	0.86443	41.546	41.183	42.047	0.77451					48	16	4	0	0	0	0.012686	1	15064	15064		139.38	85.545	1	27548000			54954	4016	39998	40318	53635	53635					-0.09212012984221474
TMDPKPLAY	9	Oxidation (M)	_TM(Oxidation (M))DPKPLAY_		TM(1)DPKPLAY		TM(77)DPKPLAY	0	0	1		ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	MULTI-MSMS	A375_MHC_IP_R1	1	526.6598510742188	2	526.260068	1050.50558	-0.52661	-0.00027713	-0.25035	-0.00013175	-0.77696	-0.00040888	526.2599384934061	36.192	0.81368	36.192	35.778	36.592	0					43	15	4	0	0	0	0.027818	1	12062	12062		76.825	49.941	1	28649000			54955	6649	39999	40319	53636	53636		353			-0.01765011902648439
TMDPKPLAY	9	Oxidation (M)	_TM(Oxidation (M))DPKPLAY_		TM(1)DPKPLAY		TM(100)DPKPLAY	0	0	1		ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	MULTI-MSMS	A375_MHC_IP_R2	2	526.6596069335938	2	526.260068	1050.50558	-0.69153	-0.00036393	-0.053771	-2.8298E-05	-0.7453	-0.00039222	526.2599760120842	35.452	0.7085	36.215	35.829	36.537	0.76338					40	13	4	0	0	0	0.0092511	1	12832	12832		103.42	69.232	1	30358000			54956	6649	39999	40319	53637	53637		353			-0.01765011902648439
TMDPKPLAY	9	Unmodified	_TMDPKPLAY_					0	0	0		ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	MULTI-SECPEP	A375_MHC_IP_R1	1	517.7055053710938	2	518.26261	1034.51067	-0.27977	-0.00014499	-0.40332	-0.00020902	-0.68309	-0.00035402	518.2623252705513	48	0.75816	48	47.668	48.426	0					31	14	3	0	0	0	0.47674	1	16854	16854		36.506	36.506	1	10087000			54957	6649	39999	40320	53638	53638					-0.0052070804001687065
TMDPKPLAY	9	Unmodified	_TMDPKPLAY_					0	0	0		ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	MULTI-SECPEP	A375_MHC_IP_R2	2	518.6622924804688	2	518.26261	1034.51067	-0.53276	-0.00027611	0.043893	2.2748E-05	-0.48887	-0.00025336	518.2625670725895	47.235	0.71392	47.996	47.664	48.378	0.76128					24	13	2	0	0	0	0.37663	1	17681	17681		43.772	15.599	1	18674000			54958	6649	39999	40320	53639	53639					-0.0052070804001687065
TMDYKESCPSV	11	Unmodified	_TMDYKESCPSV_					0	0	0		nc|ENSG00000288602|Q96BR1-2|SGK3;ENSG00000104205|ENST00000521198|SGK3	nc|ENSG00000288602|Q96BR1-2|SGK3	nc|ENSG00000288602|Q96BR1-2|SGK3	MSMS	A375_MHC_IP_R2	2	420.57806396484375	3	420.514268	1258.52097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.384	1	62.129	61.629	62.629	0.74503								0	0	0	0.16297	1	23265	23265		1.3296	0.11481	1				54959	2490	40000	40321	53640	53640					-0.09794513167753394
TMEDTLMTV	9	Unmodified	_TMEDTLMTV_					0	0	0		nc|ENSG00000132254|P53365-2|ARFIP2;nc|ENSG00000132254|P53365-3|ARFIP2;ENSG00000132254|ENST00000396777|ARFIP2	nc|ENSG00000132254|P53365-2|ARFIP2	nc|ENSG00000132254|P53365-2|ARFIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	520.2315673828125	2	520.735568	1039.45658	-0.50028	-0.00026051	-1.3285	-0.00069179	-1.8288	-0.00095231	520.7350090143218	93.788	0.40517	93.788	93.635	94.041	0					11	7	2	0	0	0	0.74412	1	34457	34457		10.074	6.1295	1	453360			54960	4383	40001	40322	53641	53641					-0.06156668253902353
TMEDTLMTV	9	Unmodified	_TMEDTLMTV_					0	0	0		nc|ENSG00000132254|P53365-2|ARFIP2;nc|ENSG00000132254|P53365-3|ARFIP2;ENSG00000132254|ENST00000396777|ARFIP2	nc|ENSG00000132254|P53365-2|ARFIP2	nc|ENSG00000132254|P53365-2|ARFIP2	MULTI-MATCH	A375_MHC_IP_R2	2		2	520.735568	1039.45658	-0.54608	-0.00028436	0.35441	0.00018456	-0.19167	-9.9808E-05	520.7362384237496	93.152	0.35435	93.891	93.646	94.001	0.73901	0.051359	0.0010297	NaN	10.074	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	691940			54961	4383	40001	40322							-0.06156668253902353
TMEDTLMTV	9	Oxidation (M)	_TMEDTLM(Oxidation (M))TV_		TM(0.001)EDTLM(0.999)TV		TM(-30)EDTLM(30)TV	0	0	1		nc|ENSG00000132254|P53365-2|ARFIP2;nc|ENSG00000132254|P53365-3|ARFIP2;ENSG00000132254|ENST00000396777|ARFIP2	nc|ENSG00000132254|P53365-2|ARFIP2	nc|ENSG00000132254|P53365-2|ARFIP2	MULTI-SECPEP	A375_MHC_IP_R1	1	529.1326904296875	2	528.733025	1055.4515	-0.94558	-0.00049996	0.92051	0.0004867	-0.025065	-1.3253E-05	528.7334343016511	68.083	0.55701	68.083	67.804	68.361	0					13	10	2	0	0	0	0.3607	1	24655	24655		42.095	13.921	2	1308700			54962	4383	40001	40323	53642	53642		228			-0.07400972116533922
TMEDTLMTV	9	Oxidation (M)	_TMEDTLM(Oxidation (M))TV_		TMEDTLM(1)TV		TM(-34)EDTLM(34)TV	0	0	1		nc|ENSG00000132254|P53365-2|ARFIP2;nc|ENSG00000132254|P53365-3|ARFIP2;ENSG00000132254|ENST00000396777|ARFIP2	nc|ENSG00000132254|P53365-2|ARFIP2	nc|ENSG00000132254|P53365-2|ARFIP2	MULTI-MSMS	A375_MHC_IP_R2	2	529.1326293945312	2	528.733025	1055.4515	-0.54108	-0.00028609	-0.82085	-0.00043401	-1.3619	-0.0007201	528.7327061422002	67.427	0.55792	68.163	67.75	68.308	0.73631					18	10	3	0	0	0	0.067501	1	25543	25543		57.471	21.427	2	1863200			54963	4383	40001	40323	53643	53643		228			-0.07400972116533922
TMEELKYSL	9	Unmodified	_TMEELKYSL_					0	0	0		nc|ENSG00000123843|P20851-2|C4BPB;ENSG00000123843|ENST00000367078|C4BPB	nc|ENSG00000123843|P20851-2|C4BPB	nc|ENSG00000123843|P20851-2|C4BPB	MULTI-SECPEP	A375_MHC_IP_R2	2	557.67822265625	2	557.278457	1112.54236	-0.7742	-0.00043145	0.90953	0.00050686	0.13532	7.5414E-05	557.2787078962533	67.198	1.3725	67.934	67.445	68.817	0.73631					40	26	2	0	0	0	0.5212	1	25460	25460		26.268	5.8536	1	1916300			54964	3860	40002	40324	53644	53644					-0.009407600767417534
TMEQKSTASGT	11	Unmodified	_TMEQKSTASGT_					0	0	0		ENSG00000215012|ENST00000328554|RTL10	ENSG00000215012|ENST00000328554|RTL10	ENSG00000215012|ENST00000328554|RTL10	MSMS	A375_MHC_IP_R2	2	570.6914672851562	2	570.763703	1139.51285	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.592	1	50.349	49.849	50.849	0.75737								0	0	0	0.15541	1	18636	18636		17.113	3.2068	1				54965	9634	40003	40325	53645	53645					-0.05132324092892304
TMGCWGMCIY	10	Unmodified	_TMGCWGMCIY_					0	0	0		ENST00000497660.5_1_1:8390216-8404070:+|nuORF;ENSG00000162426|ENST00000471889|SLC45A1	ENST00000497660.5_1_1:8390216-8404070:+|nuORF	ENST00000497660.5_1_1:8390216-8404070:+|nuORF	MSMS	A375_MHC_IP_R1	1	582.705810546875	2	582.720884	1163.42721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.295	1	91.295	90.795	91.795	0								0	0	0	0.15508	1	33545	33545		4.3292	0.38484	1				54966	6533	40004	40326	53646	53646					-0.14796227075385104
TMGFMDDNAT	10	Unmodified	_TMGFMDDNAT_					0	0	0		ENSG00000169618|ENST00000303786|PROKR1	ENSG00000169618|ENST00000303786|PROKR1	ENSG00000169618|ENST00000303786|PROKR1	MULTI-MSMS	A375_MHC_IP_R1	1	552.1117553710938	2	551.712624	1101.4107	-0.5494	-0.00030311	-0.73291	-0.00040435	-1.2823	-0.00070746	551.7118390184776	50.639	1.0156	50.639	50.153	51.168	0					28	19	2	0	0	0	0.70012	1	17962	17962		12.241	0.60036	1	3076600			54967	7424	40005	40327	53647	53647					-0.13595313436144352
TMIGEIAAA	9	Unmodified	_TMIGEIAAA_					0	0	0		ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	MULTI-MSMS	A375_MHC_IP_R1	1	876.8499755859375	1	876.44953	875.442254	-0.18627	-0.00016325	0.21771	0.00019081	0.031447	2.7562E-05	876.449728082254	79.377	0.8175	79.377	78.859	79.676	0					23	15	2	0	0	0	0.022213	1	28915	28915		81.613	37.206	1	3761800			54968	4518	40006	40328	53648	53648					-0.0004495261988495258
TMIGEIAAA	9	Unmodified	_TMIGEIAAA_					0	0	0		ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	MULTI-MATCH	A375_MHC_IP_R2	2		1	876.44953	875.442254	-0.48973	-0.00042922	0.0096626	8.4688E-06	-0.48007	-0.00042076	876.4494881810347	78.529	0.76244	79.274	78.931	79.693	0.74474	-0.051282	-9.206E-05	NaN	81.613	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5129800			54969	4518	40006	40328							-0.0004495261988495258
TMIKGLYGI	9	Unmodified	_TMIKGLYGI_					0	0	0		nc|ENSG00000134333|P00338-4|LDHA;ENST00000538451.1_1_11:18424358-18428825:+|nuORF;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA	nc|ENSG00000134333|P00338-4|LDHA	nc|ENSG00000134333|P00338-4|LDHA	MULTI-SECPEP	A375_MHC_IP_R1	1	497.64752197265625	2	498.283346	994.552139	-0.53082	-0.0002645	0.13445	6.6993E-05	-0.39638	-0.00019751	498.2833115678875	80.751	0.45728	80.751	80.541	80.999	0					13	8	2	0	0	0	0.24548	1	29481	29481		43.858	28.011	1	1221600			54970	14610	40007	40329	53649	53649					0.05464472719313562
TMIKGLYGI	9	Unmodified	_TMIKGLYGI_					0	0	0		nc|ENSG00000134333|P00338-4|LDHA;ENST00000538451.1_1_11:18424358-18428825:+|nuORF;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA	nc|ENSG00000134333|P00338-4|LDHA	nc|ENSG00000134333|P00338-4|LDHA	MULTI-SECPEP	A375_MHC_IP_R2	2	497.64752197265625	2	498.283346	994.552139	-0.46688	-0.00023264	-0.25736	-0.00012824	-0.72424	-0.00036088	498.2828772583326	79.814	0.45957	80.559	80.35	80.81	0.74474					13	8	2	0	0	0	0.63327	1	30355	30355		13.042	13.042	1	1143000			54971	14610	40007	40329	53650	53650					0.05464472719313562
TMKKIEQNY	9	Unmodified	_TMKKIEQNY_					0	0	0		ENST00000526769.3_1_11:6735844-6741409:-|nuORF;nc|ENSG00000254838|Q7Z2Y8|GVINP1	ENST00000526769.3_1_11:6735844-6741409:-|nuORF	ENST00000526769.3_1_11:6735844-6741409:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	577.6563720703125	2	577.797349	1153.58014	-0.28767	-0.00016622	-0.1934	-0.00011175	-0.48108	-0.00027796	577.797248438419	50.815	0.60595	51.569	51.311	51.917	0.75406					13	11	2	0	0	0	0.74412	1	19177	19177		10.074	0.6908	1	1145000			54972	13088	40008	40330	53651	53651					0.009497509087395883
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(110)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.V1071Wfs*3|1|0.24|ENSG00000173546|chr15:75687855-75687856|-/GCCAC|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R1	1	475.6602478027344	2	475.260402	948.506251	-0.68696	-0.00032648	-0.037914	-1.8019E-05	-0.72487	-0.0003445	475.26057173710655	36.82	1.729	36.82	36.489	38.218	0					117	33	6	0	0	0	0.0098082	1	12533	12533		114.19	65.841	1	880800000			54973	7807	40009	40331	53652	53652		390			0.029938275370682277
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(130)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.V1071Wfs*3|1|0.24|ENSG00000173546|chr15:75687855-75687856|-/GCCAC|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R1	1	475.84149169921875	2	475.260402	948.506251	-0.50696	-0.00024094	-0.16965	-8.0629E-05	-0.67661	-0.00032157	475.2604851600123	39.295	6.7133	39.295	37.913	44.626	0					372	131	5	0	0	0	0.0064781	2	13352	13352;14639		132.38	82.825	1	147490000			54974	7807	40009	40331	53653;53654	53653		390			0.029938275370682277
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(100)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.V1071Wfs*3|1|0.24|ENSG00000173546|chr15:75687855-75687856|-/GCCAC|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R1	1	475.6600646972656	2	475.260402	948.506251	-0.40512	-0.00019254	0.041635	1.9787E-05	-0.36349	-0.00017275	475.2603727704456	47.016	4.4666	47.016	44.01	48.476	0					213	87	3	0	0	0	0.0092755	1	16272	16272		103.82	63.866	1	8838900			54975	7807	40009	40331	53655	53655		390			0.029938275370682277
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(85)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.V1071Wfs*3|1|0.24|ENSG00000173546|chr15:75687855-75687856|-/GCCAC|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R1	1	475.66009521484375	2	475.260402	948.506251	-0.31571	-0.00015004	-0.046184	-2.1949E-05	-0.36189	-0.00017199	475.26035221769916	50.178	2.9987	50.178	48.476	51.475	0					115	58	2	0	0	0	0.019126	1	17419	17419		84.522	44.565	1	8803700			54976	7807	40009	40331	53656	53656		390			0.029938275370682277
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(50)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.V1071Wfs*3|1|0.24|ENSG00000173546|chr15:75687855-75687856|-/GCCAC|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	A375_MHC_IP_R1	1	474.6670837402344	2	475.260402	948.506251	-0.49854	-0.00023694	-0.14004	-6.6554E-05	-0.63858	-0.00030349	475.2602958547482	25.209	0.76117	25.209	24.801	25.562	0					22	14	2	0	0	0	0.14554	1	7317	7317		49.527	17.222	1	3779800			54977	7807	40009	40331	53657	53657		390			0.029938275370682277
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(55)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.V1071Wfs*3|1|0.24|ENSG00000173546|chr15:75687855-75687856|-/GCCAC|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	A375_MHC_IP_R1	1	475.6603698730469	2	475.260402	948.506251	-0.45042	-0.00021407	0.05665	2.6924E-05	-0.39377	-0.00018714	475.2604242102447	54.681	2.8925	54.681	53.352	56.244	0					87	56	2	0	0	0	0.11887	1	19563	19563		55.235	22.929	1	6169300			54978	7807	40009	40331	53658	53658		390			0.029938275370682277
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(73)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.V1071Wfs*3|1|0.24|ENSG00000173546|chr15:75687855-75687856|-/GCCAC|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R2	2	476.59820556640625	2	475.260402	948.506251	-0.69022	-0.00032804	-0.32289	-0.00015345	-1.0131	-0.00048149	475.260449002831	35.984	2.036	36.747	36.283	38.319	0.76338					142	39	6	0	0	0	0.032333	1	13109	13109		72.968	33.011	1	937000000			54979	7807	40009	40331	53659	53659		390			0.029938275370682277
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(150)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.V1071Wfs*3|1|0.24|ENSG00000173546|chr15:75687855-75687856|-/GCCAC|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R2	2	475.6600646972656	2	475.260402	948.506251	-0.69296	-0.00032934	-0.35431	-0.00016839	-1.0473	-0.00049773	475.2603854136573	39.322	6.261	40.096	38.124	44.385	0.77451					353	122	4	0	0	0	0.0012561	4	14450	14450;14679;15137;15361		163.69	108.91	1	134770000			54980	7807	40009	40331	53660;53661;53662;53663	53660		390			0.029938275370682277
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(110)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.V1071Wfs*3|1|0.24|ENSG00000173546|chr15:75687855-75687856|-/GCCAC|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R2	2	475.66015625	2	475.260402	948.506251	-0.4895	-0.00023264	-0.11897	-5.6544E-05	-0.60847	-0.00028918	475.26032845452477	45.477	4.6165	46.242	43.919	48.535	0.76518					202	90	3	0	0	0	0.0098082	5	16753	16753;16828;16974;17203;17427		114.19	74.229	1	10286000			54981	7807	40009	40331	53664;53665;53666;53667;53668	53664		390			0.029938275370682277
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(94)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.V1071Wfs*3|1|0.24|ENSG00000173546|chr15:75687855-75687856|-/GCCAC|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R2	2	475.66009521484375	2	475.260402	948.506251	-0.67894	-0.00032267	-0.40259	-0.00019134	-1.0815	-0.00051401	475.2604458235049	49.269	2.9396	50.026	48.425	51.365	0.75737					154	57	4	0	0	0	0.01185	2	18157	18157;18810		93.938	61.633	1	9078400			54982	7807	40009	40331	53669;53670	53669		390			0.029938275370682277
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(63)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.V1071Wfs*3|1|0.24|ENSG00000173546|chr15:75687855-75687856|-/GCCAC|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R2	2	475.65997314453125	2	475.260402	948.506251	-0.91972	-0.00043711	0.04928	2.3421E-05	-0.87044	-0.00041369	475.26038535678754	53.763	2.5989	54.514	53.385	55.984	0.75105					95	50	2	0	0	0	0.052747	3	20589	19943;20382;20589		63.227	37.828	1	7395900			54983	7807	40009	40331	53671;53672;53673	53673		390			0.029938275370682277
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(67)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.V1071Wfs*3|1|0.24|ENSG00000173546|chr15:75687855-75687856|-/GCCAC|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R2	2	475.65997314453125	2	475.260402	948.506251	-0.66155	-0.00031441	-0.12185	-5.7908E-05	-0.78339	-0.00037232	475.26039049769395	55.614	2.3428	56.365	55.779	58.122	0.75075					114	45	5	0	0	0	0.042871	2	21250	20813;21250		67.081	41.681	1	83574000			54984	7807	40009	40331	53674;53675	53675		390			0.029938275370682277
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(44)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.V1071Wfs*3|1|0.24|ENSG00000173546|chr15:75687855-75687856|-/GCCAC|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	A375_MHC_IP_R2	2	474.70513916015625	2	475.260402	948.506251	-0.81249	-0.00038614	0.041053	1.9511E-05	-0.77144	-0.00036663	475.2604255691696	51.661	1.8747	52.413	51.562	53.437	0.75225					70	36	2	0	0	0	0.20059	1	19497	19497		43.982	29.4	1	6617700			54985	7807	40009	40331	53676	53676		390			0.029938275370682277
TMLARLASA	9	Unmodified	_TMLARLASA_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.V1071Wfs*3|1|0.24|ENSG00000173546|chr15:75687855-75687856|-/GCCAC|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R1	1	467.6625671386719	2	467.262945	932.511337	-0.1832	-8.5603E-05	-0.38323	-0.00017907	-0.56643	-0.00026467	467.2629219209167	56.624	3.6599	56.624	55.991	59.651	0					145	71	6	0	0	0	0.0092755	2	20446	20318;20446		110.79	63.044	1	584860000			54986	7807	40009	40332	53677;53678	53678					0.042381313996770587
TMLARLASA	9	Unmodified	_TMLARLASA_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.V1071Wfs*3|1|0.24|ENSG00000173546|chr15:75687855-75687856|-/GCCAC|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R2	2	467.6627502441406	2	467.262945	932.511337	-0.73531	-0.00034358	-0.40262	-0.00018813	-1.1379	-0.00053171	467.26295978247344	55.562	3.4089	56.313	55.83	59.238	0.75075					140	66	5	0	0	0	0.0099638	2	20933	20933;21371		121.35	73	1	712800000			54987	7807	40009	40332	53679;53680	53679					0.042381313996770587
TMLARLASA	9	Unmodified	_TMLARLASA_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.V1071Wfs*3|1|0.24|ENSG00000173546|chr15:75687855-75687856|-/GCCAC|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	A375_MHC_IP_R2	2	467.626220703125	2	467.262945	932.511337	-1.2884	-0.00060204	1.0942	0.00051128	-0.19425	-9.0766E-05	467.2631898449083	37.034	0.45553	37.805	37.615	38.07	0.7709					15	8	3	0	0	0	0.36673	1	13543	13543		38.615	8.4164	1	3084400			54988	7807	40009	40332	53681	53681					0.042381313996770587
TMLELLNQL	9	Unmodified	_TMLELLNQL_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3;ENST00000441073.1_1_9:19027536-19027863:+|nuORF;ENST00000405257.1_1_6:4703010-4703685:+|nuORF;nc|ENSG00000100764|P62191-2|PSMC1;ENSG00000100764|ENST00000261303|PSMC1;ENST00000555787.1_1_14:90734518-90735894:+|nuORF;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5	ENSG00000165916|ENST00000298852|PSMC3;nc|ENSG00000100764|P62191-2|PSMC1;ENST00000579147.5_1_17:61906826-61909326:+|nuORF	nc|ENSG00000100764|P62191-2|PSMC1	MULTI-MSMS	A375_MHC_IP_R1	1	537.7386474609375	2	537.796817	1073.57908	-0.87669	-0.00047148	0.16713	8.9882E-05	-0.70956	-0.0003816	537.7968843643405	129.49	0.20416	129.49	129.4	129.6	0					5	3	2	0	0	0	0.026268	1	49829	49829		78.149	0	1	3089100			54989	7003;2217;1861	40010	40333	53682	53682					0.04523536539818451
TMLELLNQL	9	Unmodified	_TMLELLNQL_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3;ENST00000441073.1_1_9:19027536-19027863:+|nuORF;ENST00000405257.1_1_6:4703010-4703685:+|nuORF;nc|ENSG00000100764|P62191-2|PSMC1;ENSG00000100764|ENST00000261303|PSMC1;ENST00000555787.1_1_14:90734518-90735894:+|nuORF;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5	ENSG00000165916|ENST00000298852|PSMC3;nc|ENSG00000100764|P62191-2|PSMC1;ENST00000579147.5_1_17:61906826-61909326:+|nuORF	nc|ENSG00000100764|P62191-2|PSMC1	MULTI-SECPEP	A375_MHC_IP_R2	2	537.6668090820312	2	537.796817	1073.57908	-0.86548	-0.00046545	-0.53902	-0.00028988	-1.4045	-0.00075533	537.7967226617443	130.92	0.15314	131.14	131.06	131.21	0.2142					4	2	2	0	0	0	0.76187	1	51525	51525		11.64	0	1	1242200			54990	7003;2217;1861	40010	40333	53683	53683					0.04523536539818451
TMLELLNQL	9	Unmodified	_TMLELLNQL_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3;ENST00000441073.1_1_9:19027536-19027863:+|nuORF;ENST00000405257.1_1_6:4703010-4703685:+|nuORF;nc|ENSG00000100764|P62191-2|PSMC1;ENSG00000100764|ENST00000261303|PSMC1;ENST00000555787.1_1_14:90734518-90735894:+|nuORF;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5	ENSG00000165916|ENST00000298852|PSMC3;nc|ENSG00000100764|P62191-2|PSMC1;ENST00000579147.5_1_17:61906826-61909326:+|nuORF	nc|ENSG00000100764|P62191-2|PSMC1	MULTI-MATCH	A375_MHC_IP_R2	2		2	537.796817	1073.57908	-0.91398	-0.00049153	1.0705	0.00057572	0.15654	8.4186E-05	537.7972134535337	129.27	0.15028	129.51	129.42	129.57	0.23946	0.0094195	0.00067757	NaN	78.149	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2067600			54991	7003;2217;1861	40010	40333							0.04523536539818451
TMLFDWMYPYY	11	Unmodified	_TMLFDWMYPYY_					0	0	0		ENST00000520864.5_1_5:170395310-170632776:+|nuORF	ENST00000520864.5_1_5:170395310-170632776:+|nuORF	ENST00000520864.5_1_5:170395310-170632776:+|nuORF	MSMS	A375_MHC_IP_R2	2	510.45098876953125	3	510.554175	1528.6407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.498	1	55.249	54.749	55.749	0.75075								0	0	0	0.16332	1	20566	20566		1.4551	0.94916	1				54992	13001	40011	40334	53684	53684					-0.10247899823184525
TMNHNEGE	8	Unmodified	_TMNHNEGE_					0	0	0			REV__ENST00000550735.6_1_12:112337947-112339324:+|nuORF	REV__ENST00000550735.6_1_12:112337947-112339324:+|nuORF	MSMS	A375_MHC_IP_R1	1	466.1477966308594	2	466.182349	930.350144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.242	1	55.242	54.742	55.742	0								0	0	0	0.16876	1	19751	19751		5.2307	2.3415	1		+		54993	26037	40012	40335	53685	53685					-0.11781662704197515
TMNLLVRPDS	10	Unmodified	_TMNLLVRPDS_					0	0	0		ENST00000389385.8_1_12:113325615-113325678:+|nuORF	ENST00000389385.8_1_12:113325615-113325678:+|nuORF	ENST00000389385.8_1_12:113325615-113325678:+|nuORF	MSMS	A375_MHC_IP_R1	1	573.2739868164062	2	573.302798	1144.59104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.22	1	147.22	146.72	147.72	0								0	0	0	0.15605	1	56276	56276		1.1933	0.50296	1				54994	11398	40013	40336	53686	53686					0.024531532830224023
TMNRLRKQQQV	11	Unmodified	_TMNRLRKQQQV_					0	0	0			REV__ENST00000488829.1_1_9:89626569-89628063:+|nuORF	REV__ENST00000488829.1_1_9:89626569-89628063:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	468.17181396484375	3	467.929627	1400.76705	-0.29964	-0.00014021	-0.67663	-0.00031661	-0.97627	-0.00045683	467.92932529992066	59.42	0.91595	59.42	58.887	59.803	0					35	17	3	0	0	0	0.99916	1	21353	21353		4.4062	4.4062	1	1705000	+		54995	25361	40014	40337	53687	53687					0.0826978751695151
TMNRLTQLE	9	Unmodified	_TMNRLTQLE_					0	0	0		nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-SECPEP	A375_MHC_IP_R1	1	553.6974487304688	2	553.287148	1104.55974	-0.15591	-8.6261E-05	0.66963	0.0003705	0.51373	0.00028424	553.2870983805225	45.334	0.30349	45.334	45.081	45.384	0					7	5	2	0	0	0	0.50702	1	15872	15872		25.399	1.3787	1	1070600			54996	3113	40015	40338	53688	53688					0.011645802489283597
TMRDTMKY	8	Unmodified	_TMRDTMKY_					0	0	0		ENSG00000122912|ENST00000609923|SLC25A16	ENSG00000122912|ENST00000609923|SLC25A16	ENSG00000122912|ENST00000609923|SLC25A16	MULTI-MSMS	A375_MHC_IP_R1	1	523.2049560546875	2	523.243895	1044.47324	-0.69954	-0.00036603	-1.9998	-0.0010464	-2.6993	-0.0014124	523.2429431109047	85.75	0.55883	85.75	85.362	85.921	0					16	10	2	0	0	0	0.77624	1	31481	31481		8.5933	0.68312	1	1635600			54997	3815	40016	40339	53689	53689					-0.04722122577277332
TMRNKFLVF	9	Unmodified	_TMRNKFLVF_					0	0	0		chr2:12314405-12315509|254|12.98|0.09|7.17|+|0|TE_info:MLT1A1,MLT1A1_dup510,ERVL-MaLR,LTR,acceptor,+,12315509,12315699|MIR3681HG,None|2	chr2:12314405-12315509|254|12.98|0.09|7.17|+|0|TE_info:MLT1A1,MLT1A1_dup510,ERVL-MaLR,LTR,acceptor,+,12315509,12315699|MIR3681HG,None|2	chr2:12314405-12315509|254|12.98|0.09|7.17|+|0|TE_info:MLT1A1,MLT1A1_dup510,ERVL-MaLR,LTR,acceptor,+,12315509,12315699|MIR3681HG,None|2	MULTI-MSMS	A375_MHC_IP_R1	1	578.7213745117188	2	578.320794	1154.62703	-0.020386	-1.179E-05	0.46475	0.00026877	0.44436	0.00025698	578.3202990601666	127.95	1.6757	127.95	127.62	129.3	0					77	32	4	0	0	0	0.73804	1	49177	49177		3.5965	0	1	82630000			54998	460	40017	40340	53690	53690					0.05590655250534837
TMRRKRRRKMW	11	Unmodified	_TMRRKRRRKMW_					0	0	0			REV__ENST00000456150.5_1_3:47618647-47618728:-|nuORF	REV__ENST00000456150.5_1_3:47618647-47618728:-|nuORF	MSMS	A375_MHC_IP_R1	1	535.7222900390625	3	535.645279	1603.91401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.35	1	135.35	134.85	135.85	0								0	0	0	0.1635	1	52188	52188		0.50596	0.41111	1		+		54999	24933	40018	40341	53691	53691					0.13620605920891649
TMRTRKRRKMY	11	Unmodified	_TMRTRKRRKMY_					0	0	0		nc|ENSG00000169946|Q8WW38-2|ZFPM2;ENSG00000169946|ENST00000407775|ZFPM2	nc|ENSG00000169946|Q8WW38-2|ZFPM2	nc|ENSG00000169946|Q8WW38-2|ZFPM2	MSMS	A375_MHC_IP_R2	2	509.67620849609375	3	509.62214	1525.84459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.07	1	52.822	52.322	53.322	0.75225								0	0	0	0.16336	1	19616	19616		1.2148	0	1				55000	7455	40019	40342	53692	53692					0.10270102181470975
TMSPFNTSDY	10	Unmodified	_TMSPFNTSDY_					0	0	0		nc|ENSG00000146414|Q149N8-2|SHPRH;ENST00000433355.6_1_6:146231577-146267398:-|nuORF;nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH	nc|ENSG00000146414|Q149N8-2|SHPRH	nc|ENSG00000146414|Q149N8-2|SHPRH	MULTI-MSMS	A375_MHC_IP_R1	1	581.7044067382812	2	581.739696	1161.46484	-0.067844	-3.9468E-05	-0.12801	-7.4469E-05	-0.19585	-0.00011394	581.7394842277093	45.836	0.55912	45.836	45.484	46.043	0					15	10	2	0	0	0	0.71118	1	15956	15956		7.2892	1.5288	1	1210000			55001	5622	40020	40343	53693	53693					-0.10943398012932448
TMSPFNTSDY	10	Unmodified	_TMSPFNTSDY_					0	0	0		nc|ENSG00000146414|Q149N8-2|SHPRH;ENST00000433355.6_1_6:146231577-146267398:-|nuORF;nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH	nc|ENSG00000146414|Q149N8-2|SHPRH	nc|ENSG00000146414|Q149N8-2|SHPRH	MSMS	A375_MHC_IP_R2	2	581.6935424804688	2	581.739696	1161.46484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.701	1	89.433	88.933	89.933	0.7318								0	0	0	0.15105	1	33756	33756		15.847	2.3393	1				55002	5622	40020	40343	53694	53694					-0.10943398012932448
TMSVKMSGEY	10	Unmodified	_TMSVKMSGEY_					0	0	0			REV__nc|ENSG00000152061|Q5R372-2|RABGAP1L	REV__nc|ENSG00000152061|Q5R372-2|RABGAP1L	MULTI-MSMS	A375_MHC_IP_R2	2	567.1669311523438	2	566.754292	1131.49403	-0.63727	-0.00036117	1.1199	0.00063472	0.48266	0.00027355	566.7546256151363	35.311	0.40456	36.074	35.878	36.283	0.76338					11	7	2	0	0	0	0.50967	1	12770	12770		27.629	3.6082	1	1663000	+		55003	27290	40021	40344	53695	53695					-0.06645576988285029
TMTEDTSTDT	10	Unmodified	_TMTEDTSTDT_					0	0	0		nc|ENSG00000211950|A0A0C4DH33|IGHV1-24	nc|ENSG00000211950|A0A0C4DH33|IGHV1-24	nc|ENSG00000211950|A0A0C4DH33|IGHV1-24	MSMS	A375_MHC_IP_R1	1	551.132080078125	2	551.216251	1100.41795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.861	1	50.861	50.361	51.361	0								0	0	0	0.15158	1	18036	18036		14.838	3.198	1				55004	14890	40022	40345	53696	53696					-0.12824302354738393
TMTLIETVV	9	Unmodified	_TMTLIETVV_					0	0	0			REV__ENST00000512235.1_1_4:122261523-122301889:-|nuORF	REV__ENST00000512235.1_1_4:122261523-122301889:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	504.1781005859375	2	503.778093	1005.54163	-0.59096	-0.00029771	0.60686	0.00030572	0.015899	8.0095E-06	503.7784180921504	130.34	0.20291	130.34	130.21	130.41	0					8	3	3	0	0	0	0.47368	1	50180	50180		20.454	8.8133	1	10318000	+		55005	21992	40023	40346	53697	53697					0.03908445274225869
TMTLLAFHL	9	Unmodified	_TMTLLAFHL_					0	0	0		ENST00000448464.6_1_8:95953287-95961571:-|nuORF	ENST00000448464.6_1_8:95953287-95961571:-|nuORF	ENST00000448464.6_1_8:95953287-95961571:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	524.1887817382812	2	523.788795	1045.56304	-0.10509	-5.5043E-05	1.0041	0.00052594	0.89903	0.0004709	523.7893040030449	115.52	0.56149	115.52	115.27	115.83	0					16	10	2	0	0	0	0.48581	1	42380	42380		32.117	6.7177	1	3336300			55006	12052	40024	40347	53698	53698					0.042078750935843345
TMTLLAFHL	9	Unmodified	_TMTLLAFHL_					0	0	0		ENST00000448464.6_1_8:95953287-95961571:-|nuORF	ENST00000448464.6_1_8:95953287-95961571:-|nuORF	ENST00000448464.6_1_8:95953287-95961571:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	523.788795	1045.56304	-0.33763	-0.00017685	1.7976	0.00094156	1.46	0.00076471	523.7894688634364	114.52	0.40923	115.22	114.93	115.33	0.70271	-0.14711	0.00048835	NaN	32.117	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1973800			55007	12052	40024	40347							0.042078750935843345
TMTSEQFYL	9	Unmodified	_TMTSEQFYL_					0	0	0			REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B	REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B	MULTI-MSMS	A375_MHC_IP_R2	2	560.655029296875	2	560.254982	1118.49541	-0.56099	-0.0003143	-0.18006	-0.00010088	-0.74105	-0.00041518	560.756157234228	64.165	0.81374	64.905	64.446	65.259	0.74023					37	15	4	0	0	0	0.38603	2	24290	24242;24290		25.399	4.9457	1	3253300	+		55008	22126	40025	40348	53699;53700	53700					-0.059096196278687785
TMTVFKSIKIH	11	Unmodified	_TMTVFKSIKIH_					0	0	0		ENST00000380916.8_1_9:14618745-14618955:-|nuORF	ENST00000380916.8_1_9:14618745-14618955:-|nuORF	ENST00000380916.8_1_9:14618745-14618955:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	653.2732543945312	2	652.873391	1303.73223	-0.79362	-0.00051814	0.53325	0.00034814	-0.26038	-0.00016999	652.873343427809	130.77	1.7265	130.98	130.55	132.28	0.21419					89	33	4	0	0	0	0.99738	1	51619	51619		2.7352	1.0826	1	35676000			55009	11362	40026	40349	53701	53701					0.09251151656303591
TMTYMTTTP	9	Unmodified	_TMTYMTTTP_					0	0	0		nc|ENSG00000134909|A7KAX9-2|ARHGAP32;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;ENST00000524655.5_1_11:128842326-128843235:-|nuORF	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-MSMS	A375_MHC_IP_R1	1	523.6927490234375	2	523.730286	1045.44602	-0.3997	-0.00020933	-1.3278	-0.00069541	-1.7275	-0.00090475	524.2326292003609	34.97	0.76304	34.97	34.759	35.522	0					23	14	2	0	0	0	0.64808	1	11668	11668		11.64	0	1	5410200			55010	4625	40027	40350	53702	53702					-0.07488650908339878
TMVAAHIL	8	Unmodified	_TMVAAHIL_					0	0	0			REV__ENSG00000126856|ENST00000449207|PRDM7	REV__ENSG00000126856|ENST00000449207|PRDM7	MULTI-MSMS	A375_MHC_IP_R1	1	428.6408386230469	2	428.241481	854.468409	-0.3442	-0.0001474	-0.19639	-8.4104E-05	-0.5406	-0.00023151	428.2406814409397	86.096	1.0634	86.096	85.616	86.679	0					47	20	3	0	0	0	0.77781	1	31530	31530		2.8892	0	1	4695400	+		55011	18401	40028	40351	53703	53703					0.03535361342244414
TMVAAHIL	8	Unmodified	_TMVAAHIL_					0	0	0			REV__ENSG00000126856|ENST00000449207|PRDM7	REV__ENSG00000126856|ENST00000449207|PRDM7	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	428.241481	854.468409	-0.3442	-0.0001474	-0.19639	-8.4104E-05	-0.5406	-0.00023151	428.2406814409397	86.096	1.0634	86.096	85.616	86.679	0	0.033378	1.7378E-05	NaN	2.8892	47	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4695400	+		55012	18401	40028	40351							0.03535361342244414
TMVDRIEEV	9	Oxidation (M)	_TM(Oxidation (M))VDRIEEV_		TM(1)VDRIEEV		TM(110)VDRIEEV	0	0	1		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	A375_MHC_IP_R1	1	554.6710815429688	2	554.271164	1106.52777	-0.92618	-0.00051335	0.33972	0.00018829	-0.58646	-0.00032506	554.271483478742	38.243	0.51099	38.243	37.964	38.475	0					23	9	3	0	0	0	0.0096967	1	12939	12939		110.79	46.556	1	6503600			55013	1565	40029	40352	53704	53704		46			-0.02122832224904414
TMVDRIEEV	9	Oxidation (M)	_TM(Oxidation (M))VDRIEEV_		TM(1)VDRIEEV		TM(69)VDRIEEV	0	0	1		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	A375_MHC_IP_R2	2	554.67041015625	2	554.271164	1106.52777	-1.1279	-0.00062515	-0.025752	-1.4274E-05	-1.1536	-0.00063942	554.2713238738945	37.471	0.56149	38.242	38.02	38.581	0.7709					23	10	3	0	0	0	0.037085	1	13731	13731		69.338	29.381	1	4568200			55014	1565	40029	40352	53705	53705		46			-0.02122832224904414
TMVDRIEEV	9	Unmodified	_TMVDRIEEV_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	A375_MHC_IP_R2	2	547.1723022460938	2	546.273706	1090.53286	-1.1405	-0.00062302	-3.5559	-0.0019425	-4.6964	-0.0025655	546.2738945561919	56.464	0.8648	57.215	56.847	57.712	0.75015					38	16	4	0	0	0	0.16286	2	21364	21364;21391		40.725	15.734	1	6103000			55015	1565	40029	40353	53706;53707	53706					-0.008785283622728457
TMVEHNYYV	9	Unmodified	_TMVEHNYYV_					0	0	0		ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	MULTI-MSMS	A375_MHC_IP_R1	1	578.2539672851562	2	578.260599	1154.50665	0.26877	0.00015542	-0.38105	-0.00022034	-0.11227	-6.4922E-05	578.260335208131	45.138	0.40563	45.138	44.928	45.334	0					13	7	2	0	0	0	0.06083	1	15817	15817		60.074	43.132	1	2318500			55016	1280	40030	40354	53708	53708					-0.06442797533759403
TMVEHNYYV	9	Unmodified	_TMVEHNYYV_					0	0	0		ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	MULTI-SECPEP	A375_MHC_IP_R2	2	578.6605224609375	2	578.260599	1154.50665	-0.18485	-0.00010689	-0.061428	-3.5521E-05	-0.24627	-0.00014241	578.2603683387636	44.341	0.75905	45.11	44.631	45.39	0.76909					27	14	3	0	0	0	0.074405	1	16553	16553		70.332	49.917	1	3549300			55017	1280	40030	40354	53709	53709					-0.06442797533759403
TMVEHNYYV	9	Oxidation (M)	_TM(Oxidation (M))VEHNYYV_		TM(1)VEHNYYV		TM(79)VEHNYYV	0	0	1		ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	MULTI-SECPEP	A375_MHC_IP_R1	1	586.6583251953125	2	586.258056	1170.50156	-0.13883	-8.1388E-05	0.16459	9.649E-05	0.02576	1.5102E-05	586.2582842715842	35.351	0.71339	35.351	34.912	35.625	0					25	13	2	0	0	0	0.070665	1	11671	11671		78.728	53.329	1	3178600			55018	1280	40030	40355	53710	53710		29			-0.07687101396368234
TMVEHNYYV	9	Oxidation (M)	_TM(Oxidation (M))VEHNYYV_		TM(1)VEHNYYV		TM(54)VEHNYYV	0	0	1		ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	MULTI-MSMS	A375_MHC_IP_R2	2	586.6578369140625	2	586.258056	1170.50156	-0.75051	-0.00043999	0.20089	0.00011777	-0.54962	-0.00032222	586.2583506578308	34.598	0.61013	35.361	34.966	35.576	0.76338					23	11	3	0	0	0	0.082375	1	12431	12431		53.833	32.086	1	4395700			55019	1280	40030	40355	53711	53711		29			-0.07687101396368234
TMVGVIPA	8	Unmodified	_TMVGVIPA_					0	0	0		PCDH15|p.S1059P|1|0.39|ENSG00000150275|chr10:53940923-53940923|A/G|missense_variant	PCDH15|p.S1059P|1|0.39|ENSG00000150275|chr10:53940923-53940923|A/G|missense_variant	PCDH15|p.S1059P|1|0.39|ENSG00000150275|chr10:53940923-53940923|A/G|missense_variant	MSMS	A375_MHC_IP_R1	1	394.26312255859375	2	394.222757	786.430961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.429	1	23.429	22.929	23.929	0								0	0	0	0.16876	1	6429	6429		10.183	0.83596	1				55020	15114	40031	40356	53712	53712					0.029202700766290945
TMYFFFGL	8	Unmodified	_TMYFFFGL_					0	0	0		ENSG00000181458|ENST00000323523|TMEM45A	ENSG00000181458|ENST00000323523|TMEM45A	ENSG00000181458|ENST00000323523|TMEM45A	MULTI-MSMS	A375_MHC_IP_R1	1	513.1875	2	513.243689	1024.47283	-0.64009	-0.00032852	-0.85077	-0.00043665	-1.4909	-0.00076518	513.2433039341314	46.769	0.56163	46.769	46.545	47.107	0					18	10	3	0	0	0	0.77686	1	16550	16550		6.3541	0.59368	1	3731100			55021	8348	40032	40357	53713	53713					-0.038431742348166154
TNAIKQTF	8	Unmodified	_TNAIKQTF_					0	0	0		nc|ENSG00000085978|Q676U5-2|ATG16L1;ENSG00000085978|ENST00000392017|ATG16L1;nc|ENSG00000085978|Q676U5-4|ATG16L1;nc|ENSG00000085978|Q676U5-5|ATG16L1;ENST00000479942.5_1_2:234198871-234202993:+|nuORF	nc|ENSG00000085978|Q676U5-2|ATG16L1;ENST00000479942.5_1_2:234198871-234202993:+|nuORF	nc|ENSG00000085978|Q676U5-2|ATG16L1	MULTI-MSMS	A375_MHC_IP_R1	1	461.6427917480469	2	461.753267	921.491981	-0.55939	-0.0002583	-1.4702	-0.00067887	-2.0296	-0.00093717	461.7532666088951	30.478	0.70782	30.478	30.251	30.959	0					21	13	2	0	0	0	0.14801	1	9663	9663		86.332	48.358	1	5041000			55022	1822;12487	40033	40358	53714	53714					0.02809498380418063
TNAIKQTF	8	Unmodified	_TNAIKQTF_					0	0	0		nc|ENSG00000085978|Q676U5-2|ATG16L1;ENSG00000085978|ENST00000392017|ATG16L1;nc|ENSG00000085978|Q676U5-4|ATG16L1;nc|ENSG00000085978|Q676U5-5|ATG16L1;ENST00000479942.5_1_2:234198871-234202993:+|nuORF	nc|ENSG00000085978|Q676U5-2|ATG16L1;ENST00000479942.5_1_2:234198871-234202993:+|nuORF	nc|ENSG00000085978|Q676U5-2|ATG16L1	MULTI-SECPEP	A375_MHC_IP_R2	2	462.1529846191406	2	461.753267	921.491981	-0.99543	-0.00045964	0.29466	0.00013606	-0.70077	-0.00032358	461.7534228399912	29.711	0.45247	30.41	30.236	30.688	0.69872					11	8	2	0	0	0	0.1069	1	10411	10411		128.93	76.664	1	3897900			55023	1822;12487	40033	40358	53715	53715					0.02809498380418063
TNCHVNVMEV	10	Unmodified	_TNCHVNVMEV_					0	0	0		ENST00000517617.1_1_8:68864752-69023167:+|nuORF;nc|ENSG00000046889|Q70Z35-4|PREX2;ENSG00000046889|ENST00000288368|PREX2	ENST00000517617.1_1_8:68864752-69023167:+|nuORF	ENST00000517617.1_1_8:68864752-69023167:+|nuORF	MSMS	A375_MHC_IP_R2	2	573.1713256835938	2	573.257533	1144.50051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.87	1	124.2	123.7	124.7	0.32969								0	0	0	0.12273	1	47724	47724		38.176	13.502	1				55024	1192	40034	40359	53716	53716					-0.06595639036913781
TNDAHHTIKL	10	Unmodified	_TNDAHHTIKL_					0	0	0			REV__ENSG00000136378|ENST00000388820|ADAMTS7	REV__ENSG00000136378|ENST00000388820|ADAMTS7	MULTI-SECPEP	A375_MHC_IP_R2	2	575.725341796875	2	575.304187	1148.59382	-0.20823	-0.00011979	-0.055792	-3.2097E-05	-0.26402	-0.00015189	575.3040150325771	27.153	0.30579	27.832	27.69	27.996	0.67857					7	5	2	0	0	0	0.88918	1	9227	9227		13.042	6.3193	1	1243300	+		55025	18932	40035	40360	53717	53717					0.025467447321716463
TNDDDEDDQE	10	Unmodified	_TNDDDEDDQE_					0	0	0			REV__ENST00000505792.1_1_5:99897758-99917066:+|nuORF	REV__ENST00000505792.1_1_5:99897758-99917066:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	599.0978393554688	2	598.197101	1194.37965	-0.30355	-0.00018158	-0.54696	-0.00032719	-0.85051	-0.00050878	598.197593633228	62.267	0.717	62.267	61.943	62.66	0					38	13	4	0	0	0	0.7154	1	22470	22470		5.7319	0	1	8264800	+		55026	21266	40036	40361	53718	53718					-0.20976516735709083
TNDDDEDDQE	10	Unmodified	_TNDDDEDDQE_					0	0	0			REV__ENST00000505792.1_1_5:99897758-99917066:+|nuORF	REV__ENST00000505792.1_1_5:99897758-99917066:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	598.5966186523438	2	598.197101	1194.37965	-0.84314	-0.00050436	-0.33235	-0.00019881	-1.1755	-0.00070317	598.1974890764207	61.754	0.70432	62.497	62.17	62.874	0.74263					36	13	4	0	0	0	0.71076	1	23391	23391		12.241	0	1	8004200	+		55027	21266	40036	40361	53719	53719					-0.20976516735709083
TNDLSFIHL	9	Unmodified	_TNDLSFIHL_					0	0	0		ENSG00000165757|ENST00000375377|JCAD	ENSG00000165757|ENST00000375377|JCAD	ENSG00000165757|ENST00000375377|JCAD	MULTI-SECPEP	A375_MHC_IP_R2	2	529.6138916015625	2	530.277106	1058.53966	-0.59966	-0.00031798	-1.3418	-0.00071154	-1.9415	-0.0010295	530.2766262663725	76.607	0.76219	77.347	76.943	77.705	0.74052					22	14	2	0	0	0	0.3213	1	29171	29171		37.974	17.52	1	1150300			55028	6989	40037	40362	53720	53720					0.012731525806202626
TNDRLVFK	8	Unmodified	_TNDRLVFK_					0	0	0		nc|ENSG00000180881|Q9BXY5-3|CAPS2;ENST00000409004.5_1_12:75670025-75710066:-|nuORF;nc|ENSG00000180881|Q9BXY5-2|CAPS2;nc|ENSG00000180881|Q9BXY5|CAPS2;ENSG00000180881|ENST00000699294|CAPS2;nc|ENSG00000180881|Q9BXY5-5|CAPS2	nc|ENSG00000180881|Q9BXY5-3|CAPS2	nc|ENSG00000180881|Q9BXY5-3|CAPS2	MULTI-SECPEP	A375_MHC_IP_R1	1	496.9752197265625	2	496.779816	991.545079	-0.67029	-0.00033299	0.50674	0.00025174	-0.16355	-8.125E-05	496.780025257559	23.713	0.30469	23.713	23.533	23.838	0					7	5	2	0	0	0	0.91495	1	6480	6480		12.532	0	1	2354400			55029	8323	40038	40363	53721	53721					0.0489687616310448
TNDRYDVP	8	Unmodified	_TNDRYDVP_					0	0	0			REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3	REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3	MULTI-MSMS	A375_MHC_IP_R1	1	490.62762451171875	2	490.227613	978.440674	-0.25828	-0.00012661	0.13025	6.3851E-05	-0.12803	-6.2763E-05	490.2275055079436	34.835	1.5766	34.835	34.608	36.184	0					83	30	4	0	0	0	0.31691	1	11753	11753		57.471	0	1	288910000	+		55030	19554	40039	40364	53722	53722					-0.04940870384291429
TNDSLDFLI	9	Unmodified	_TNDSLDFLI_					0	0	0			REV__ENSG00000163568|ENST00000368130|AIM2	REV__ENSG00000163568|ENST00000368130|AIM2	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1378173828125	2	519.261122	1036.50769	-1.1119	-0.00057738	-0.14917	-7.7458E-05	-1.2611	-0.00065484	519.2610014310479	33.52	1.116	34.272	33.737	34.853	0.75225					66	21	5	0	0	0	0.39388	1	12261	12261		39.957	0	1	120820000	+		55031	20381	40040	40365	53723	53723					-0.00910259893203147
TNDTVYRE	8	Unmodified	_TNDTVYRE_					0	0	0		nc|ENSG00000105483|Q9Y2G2-3|CARD8;ENSG00000105483|ENST00000651546|CARD8;ENST00000518596.5_1_19:48737658-48744277:-|nuORF;ENST00000522051.5_1_19:48737658-48744277:-|nuORF;ENST00000517778.5_1_19:48737137-48744277:-|nuORF	nc|ENSG00000105483|Q9Y2G2-3|CARD8	nc|ENSG00000105483|Q9Y2G2-3|CARD8	MULTI-MSMS	A375_MHC_IP_R2	2	500.68408203125	2	499.232896	996.451239	-0.87039	-0.00043453	-0.15658	-7.817E-05	-1.027	-0.0005127	499.2328044611235	34.15	2.2318	34.902	34.651	36.883	0.75225					88	43	4	0	0	0	0.77515	1	12254	12254		12.532	0	1	67698000			55032	2609	40041	40366	53724	53724					-0.04712887729863269
TNDTYGNVQ	9	Unmodified	_TNDTYGNVQ_					0	0	0			REV__tr|U7SPW7|U7SPW7_FUSNUChemotaxisproteinMotBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01670PE=4SV=1	REV__tr|U7SPW7|U7SPW7_FUSNUChemotaxisproteinMotBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01670PE=4SV=1	MSMS	A375_MHC_IP_R1	1	506.12139892578125	2	506.222528	1010.4305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.872	1	34.872	34.372	35.372	0								0	0	0	0.14631	1	11539	11539		27.629	1.3607	1		+		55033	28369	40042	40367	53725	53725					-0.07429478109509091
TNEEETNFL	9	Unmodified	_TNEEETNFL_					0	0	0		nc|ENSG00000204965|Q9Y5H7-2|PCDHA5;nc|ENSG00000204965|Q9Y5H7-3|PCDHA5;ENSG00000204965|ENST00000529859|PCDHA5	nc|ENSG00000204965|Q9Y5H7-2|PCDHA5	nc|ENSG00000204965|Q9Y5H7-2|PCDHA5	MULTI-MSMS	A375_MHC_IP_R1	1	549.1427612304688	2	548.743293	1095.47203	-0.88076	-0.00048331	0.36038	0.00019776	-0.52037	-0.00028555	548.7432608334075	30.104	0.65389	30.104	29.899	30.553	0					29	12	3	0	0	0	0.22013	1	9510	9510		36.506	3.0613	1	27837000			55034	9490	40043	40368	53726	53726					-0.0718834214085291
TNEEETNFL	9	Unmodified	_TNEEETNFL_					0	0	0		nc|ENSG00000204965|Q9Y5H7-2|PCDHA5;nc|ENSG00000204965|Q9Y5H7-3|PCDHA5;ENSG00000204965|ENST00000529859|PCDHA5	nc|ENSG00000204965|Q9Y5H7-2|PCDHA5	nc|ENSG00000204965|Q9Y5H7-2|PCDHA5	MULTI-MSMS	A375_MHC_IP_R2	2	549.1424560546875	2	548.743293	1095.47203	-1.4796	-0.0008119	0.84416	0.00046323	-0.6354	-0.00034867	548.7435905150891	29.47	0.80857	30.169	29.93	30.739	0.69872					34	15	3	0	0	0	0.06083	2	10268	10268;10364		60.074	0.60036	1	24204000			55035	9490	40043	40368	53727;53728	53727					-0.0718834214085291
TNEIALKRG	9	Unmodified	_TNEIALKRG_					0	0	0			REV__ENSG00000101115|ENST00000217086|SALL4	REV__ENSG00000101115|ENST00000217086|SALL4	MULTI-MSMS	A375_MHC_IP_R1	1	501.6904602050781	2	501.290548	1000.56654	0.040667	2.0386E-05	-0.013379	-6.7069E-06	0.027288	1.3679E-05	501.2904445562053	114.39	5.9949	114.39	111.52	117.51	0					272	117	3	0	0	0	0.55471	1	41900	41900		17.113	3.2068	1	35626000	+		55036	17143	40044	40369	53729	53729					0.06628261191804086
TNEIALKRG	9	Unmodified	_TNEIALKRG_					0	0	0			REV__ENSG00000101115|ENST00000217086|SALL4	REV__ENSG00000101115|ENST00000217086|SALL4	MULTI-MSMS	A375_MHC_IP_R2	2	501.68988037109375	2	501.290548	1000.56654	-0.3975	-0.00019926	0.057157	2.8652E-05	-0.34035	-0.00017061	501.2904638081066	114.09	5.6505	114.8	111.98	117.63	0.70984					264	110	4	0	0	0	0.32092	1	42696	42696		29.082	2.1979	1	35047000	+		55037	17143	40044	40369	53730	53730					0.06628261191804086
TNFATLRW	8	Unmodified	_TNFATLRW_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF;nc|ENSG00000127663|O94953-2|KDM4B	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-SECPEP	A375_MHC_IP_R1	1	504.19921875	2	504.766709	1007.51886	-0.37056	-0.00018705	1.1439	0.00057741	0.77336	0.00039037	504.7665159545881	77.495	0.45575	77.495	77.235	77.69	0					11	8	2	0	0	0	0.90057	1	28218	28218		29.082	5.9332	1	1050400			55038	4101	40045	40370	53731	53731					0.015406069916252818
TNFRKCHY	8	Unmodified	_TNFRKCHY_					0	0	0			REV__ENSG00000258818|ENST00000555835|RNASE4	REV__ENSG00000258818|ENST00000555835|RNASE4	MULTI-SECPEP	A375_MHC_IP_R2	2	535.156005859375	2	534.755818	1067.49708	-0.84345	-0.00045104	1.2672	0.00067762	0.42371	0.00022658	534.7563868602124	39.957	0.66043	40.731	40.32	40.98	0.77451					19	12	2	0	0	0	0.972	1	14797	14797		4.756	0	1	3806700	+		55039	22899	40046	40371	53732	53732					-0.033965210285941794
TNFSLSGL	8	Unmodified	_TNFSLSGL_					0	0	0			REV__ENST00000586256.1_1_16:4784633-4796526:+|nuORF	REV__ENST00000586256.1_1_16:4784633-4796526:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	838.8317260742188	1	838.430509	837.423233	-0.38286	-0.000321	0.11407	9.5638E-05	-0.26879	-0.00022536	838.430527042926	95.842	0.55436	95.842	95.515	96.069	0					18	10	2	0	0	0	0.87643	1	35129	35129		32.305	0	1	6227100	+		55040	20663	40047	40372	53733	53733					-0.0019816591926655747
TNFSLSGL	8	Unmodified	_TNFSLSGL_					0	0	0			REV__ENST00000586256.1_1_16:4784633-4796526:+|nuORF	REV__ENST00000586256.1_1_16:4784633-4796526:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	838.430509	837.423233	-0.4635	-0.00038861	0.11673	9.7871E-05	-0.34677	-0.00029074	838.430493458918	95.006	0.66006	95.756	95.381	96.041	0.75044	-0.042837	1.6173E-06	NaN	32.305	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7120500	+		55041	20663	40047	40372							-0.0019816591926655747
TNGLLEPLY	9	Unmodified	_TNGLLEPLY_					0	0	0			REV__ENSG00000068097|ENST00000184956|HEATR6	REV__ENSG00000068097|ENST00000184956|HEATR6	MULTI-MSMS	A375_MHC_IP_R2	2	511.19757080078125	2	510.274032	1018.53351	-0.68848	-0.00035131	-0.22992	-0.00011732	-0.91839	-0.00046863	510.27395523699056	104.72	3.8699	105.49	105.05	108.92	0.76308					241	75	6	0	0	0	0.2002	1	40251	40251		37.974	5.6685	1	973940000	+		55042	16538	40048	40373	53734	53734					0.024986343490809304
TNGRAIEW	8	Unmodified	_TNGRAIEW_					0	0	0			REV__ENSG00000149548|ENST00000344762|CCDC15	REV__ENSG00000149548|ENST00000344762|CCDC15	MULTI-MSMS	A375_MHC_IP_R1	1	473.6666564941406	2	473.740691	945.466829	-0.60952	-0.00028875	-0.59076	-0.00027987	-1.2003	-0.00056862	473.74061413167226	27.746	0.65596	27.746	27.381	28.037	0					19	12	2	0	0	0	0.76654	1	8466	8466		15.847	0	1	2451600	+		55043	19688	40049	40374	53735	53735					-0.008085564221573804
TNGRAIEW	8	Unmodified	_TNGRAIEW_					0	0	0			REV__ENSG00000149548|ENST00000344762|CCDC15	REV__ENSG00000149548|ENST00000344762|CCDC15	MULTI-MSMS	A375_MHC_IP_R2	2	473.6664733886719	2	473.740691	945.466829	-0.62113	-0.00029426	-0.13055	-6.1848E-05	-0.75169	-0.0003561	473.7405647655945	27.153	0.46026	27.831	27.536	27.996	0.67857					14	8	2	0	0	0	0.75389	1	9210	9210		19.257	0	1	2421900	+		55044	19688	40049	40374	53736	53736					-0.008085564221573804
TNGRAIEW	8	Unmodified	_TNGRAIEW_					0	0	0			REV__ENSG00000149548|ENST00000344762|CCDC15	REV__ENSG00000149548|ENST00000344762|CCDC15	MULTI-SECPEP	A375_MHC_IP_R2	2	474.140380859375	2	473.740691	945.466829	-0.62113	-0.00029426	-0.13055	-6.1848E-05	-0.75169	-0.0003561	473.7405647655945	27.153	0.46026	27.831	27.536	27.996	0.67857					14	8	2	0	0	0	0.76996	1	9249	9249		29.082	9.8246	1	2421900	+		55045	19688	40049	40374	53737	53737					-0.008085564221573804
TNGRAIEW	8	Unmodified	_TNGRAIEW_					0	0	0			REV__ENSG00000149548|ENST00000344762|CCDC15	REV__ENSG00000149548|ENST00000344762|CCDC15	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	473.740691	945.466829	-0.60952	-0.00028875	-0.59076	-0.00027987	-1.2003	-0.00056862	473.74061413167226	27.746	0.65596	27.746	27.381	28.037	0	-0.042695	-0.00037985	NaN	15.847	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2451600	+		55046	19688	40049	40374							-0.008085564221573804
TNGVPTTEEVD	11	Unmodified	_TNGVPTTEEVD_					0	0	0		ENSG00000101292|ENST00000678254|PROKR2	ENSG00000101292|ENST00000678254|PROKR2	ENSG00000101292|ENST00000678254|PROKR2	MULTI-MSMS	A375_MHC_IP_R1	1	581.6669311523438	2	581.267133	1160.51971	-0.22863	-0.00013289	-0.1799	-0.00010457	-0.40853	-0.00023747	581.2671061359913	47.353	0.61288	47.353	47.055	47.668	0					31	11	4	0	0	0	0.26114	1	16613	16613		49.742	5.9695	1	8945300			55047	2277	40050	40375	53738	53738					-0.054126879406794615
TNHAEVEAYF	10	Unmodified	_TNHAEVEAYF_					0	0	0			REV__nc|ENSG00000099834|Q9HBB8-2|CDHR5	REV__nc|ENSG00000099834|Q9HBB8-2|CDHR5	MULTI-SECPEP	A375_MHC_IP_R1	1	591.1666870117188	2	590.767103	1179.51965	-0.20566	-0.00012149	-0.47262	-0.00027921	-0.67828	-0.0004007	590.7668530370553	62.558	0.41074	62.558	62.3	62.711	0					10	7	2	0	0	0	0.8125	1	22641	22641		18.146	5.1039	1	1597700	+		55048	17027	40051	40376	53739	53739					-0.06292643150004551
TNHFIKDWTRQ	11	Unmodified	_TNHFIKDWTRQ_					0	0	0			REV__ENST00000591563.5_1_17:73828844-73835996:-|nuORF	REV__ENST00000591563.5_1_17:73828844-73835996:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	482.9805908203125	3	482.580992	1444.72115	-0.54673	-0.00026384	-0.188	-9.0724E-05	-0.73473	-0.00035457	482.5809304300377	38.422	0.56123	38.422	38.168	38.73	0					15	10	2	0	0	0	0.99165	1	13059	13059		3.5927	0	1	4972500	+		55049	16978	40052	40377	53740	53740					0.016574656063539805
TNISCSDSLSY	11	Unmodified	_TNISCSDSLSY_					0	0	0		nc|ENSG00000134531|P54849-2|EMP1;ENSG00000134531|ENST00000256951|EMP1	nc|ENSG00000134531|P54849-2|EMP1	nc|ENSG00000134531|P54849-2|EMP1	MULTI-MSMS	A375_MHC_IP_R1	1	595.2293701171875	2	595.255711	1188.49687	-0.33379	-0.00019869	-0.22466	-0.00013373	-0.55845	-0.00033242	595.7564525589277	102.39	1.2649	102.39	101.24	102.51	0					35	24	2	0	0	0	0.73378	1	37437	37437		5.2969	0.54088	1	4360800			55050	4584	40053	40378	53741	53741					-0.08984030329770576
TNIYKILL	8	Unmodified	_TNIYKILL_					0	0	0		nc|ENSG00000164362|O14746-3|TERT;ENSG00000164362|ENST00000310581|TERT	nc|ENSG00000164362|O14746-3|TERT	nc|ENSG00000164362|O14746-3|TERT	MULTI-SECPEP	A375_MHC_IP_R1	1	488.6526794433594	2	489.305136	976.595718	-0.42365	-0.00020729	-0.011713	-5.7312E-06	-0.43536	-0.00021303	489.305059695779	80.836	0.55871	80.836	80.541	81.1	0					18	10	2	0	0	0	0.8957	1	29614	29614		10.824	0	1	4427700			55051	6833	40054	40379	53742	53742					0.10648405488097978
TNKATGKL	8	Unmodified	_TNKATGKL_					0	0	0		nc|ENSG00000112304|Q9NPJ3-2|ACOT13;ENSG00000112304|ENST00000230048|ACOT13	nc|ENSG00000112304|Q9NPJ3-2|ACOT13	nc|ENSG00000112304|Q9NPJ3-2|ACOT13	MULTI-MSMS	A375_MHC_IP_R2	2	832.8888549804688	1	832.488693	831.481417	-0.57083	-0.00047521	1.5591	0.0012979	0.98829	0.00082274	832.4900857194463	144.08	0.23456	144.1	143.94	144.17	0.024414					7	4	2	0	0	0	0.77839	1	56300	56300		0.79363	0	1	1107700			55052	3073	40055	40380	53743	53743					0.05893515726006626
TNKQRLNKEY	10	Unmodified	_TNKQRLNKEY_					0	0	0		MEPE|p.R93K|1|0.18|ENSG00000152595|chr4:87845146-87845146|G/A|missense_variant	MEPE|p.R93K|1|0.18|ENSG00000152595|chr4:87845146-87845146|G/A|missense_variant	MEPE|p.R93K|1|0.18|ENSG00000152595|chr4:87845146-87845146|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	647.5172729492188	2	647.349126	1292.6837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.25	1	62.993	62.493	63.493	0.74263								0	0	0	0.15423	1	23595	23595		7.1017	0.89594	1				55053	14372	40056	40381	53744	53744					0.049063743407714355
TNKVIEIYLDP	11	Unmodified	_TNKVIEIYLDP_					0	0	0			REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MULTI-MSMS	A375_MHC_IP_R1	1	435.9735412597656	3	435.574732	1303.70237	-0.24066	-0.00010483	-1.5785	-0.00068755	-1.8192	-0.00079238	435.5738278253511	23.252	0.2559	23.252	23.125	23.381	0					7	4	2	0	0	0	0.72651	1	6360	6360		12.228	2.4633	1	8569100	+		55054	18819	40057	40382	53745	53745					0.06266491191922796
TNKVIEIYLDP	11	Unmodified	_TNKVIEIYLDP_					0	0	0			REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	435.574732	1303.70237	-0.24066	-0.00010483	-1.5785	-0.00068755	-1.8192	-0.00079238	435.5738278253511	23.252	0.2559	23.252	23.125	23.381	0	0	0	NaN	12.228	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8569100	+		55055	18819	40057	40382							0.06266491191922796
TNLPADIPSY	10	Unmodified	_TNLPADIPSY_					0	0	0		nc|ENSG00000139263|Q6UXM1-2|LRIG3;ENSG00000139263|ENST00000320743|LRIG3;ENST00000552646.1_1_12:59268119-59271275:-|nuORF;ENST00000433272.6_1_12:59266356-59274151:-|nuORF	nc|ENSG00000139263|Q6UXM1-2|LRIG3	nc|ENSG00000139263|Q6UXM1-2|LRIG3	MULTI-MSMS	A375_MHC_IP_R2	2	546.1742553710938	2	545.774396	1089.53424	-0.74484	-0.00040652	0.042525	2.3209E-05	-0.70232	-0.00038331	545.774384106688	104.75	1.6797	105.51	105.05	106.73	0.76308					50	32	2	0	0	0	0.54492	1	39638	39638		24.991	3.454	1	4099100			55056	5064	40058	40383	53746	53746					-0.006945710018499085
TNLPADIPSY	10	Unmodified	_TNLPADIPSY_					0	0	0		nc|ENSG00000139263|Q6UXM1-2|LRIG3;ENSG00000139263|ENST00000320743|LRIG3;ENST00000552646.1_1_12:59268119-59271275:-|nuORF;ENST00000433272.6_1_12:59266356-59274151:-|nuORF	nc|ENSG00000139263|Q6UXM1-2|LRIG3	nc|ENSG00000139263|Q6UXM1-2|LRIG3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	545.774396	1089.53424	-0.74484	-0.00040652	0.042525	2.3209E-05	-0.70232	-0.00038331	545.774384106688	104.75	1.6797	105.51	105.05	106.73	0.76308	-0.079243	-0.00015814	NaN	24.991	50	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4099100			55057	5064	40058	40383							-0.006945710018499085
TNNDTHTQEPS	11	Unmodified	_TNNDTHTQEPS_					0	0	0		ENSG00000105223|ENST00000409735|PLD3	ENSG00000105223|ENST00000409735|PLD3	ENSG00000105223|ENST00000409735|PLD3	MSMS	A375_MHC_IP_R2	2	622.1807861328125	2	622.262913	1242.51127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.931	1	63.673	63.173	64.173	0.74263								0	0	0	0.15016	1	23858	23858		20.415	1.1575	1				55058	2578	40059	40384	53747	53747					-0.10028241857298781
TNNKEYEKQDP	11	Unmodified	_TNNKEYEKQDP_					0	0	0			REV__ENSG00000173114|ENST00000308478|LRRN3	REV__ENSG00000173114|ENST00000308478|LRRN3	MULTI-MSMS	A375_MHC_IP_R1	1	456.2807922363281	3	455.880884	1364.62082	0.10666	4.8624E-05	-0.59548	-0.00027147	-0.48882	-0.00022284	455.88074543791276	22.208	0.20393	22.208	22.113	22.317	0					7	3	3	0	0	0	0.73378	1	5960	5960		2.4348	0	1	1990400	+		55059	21194	40060	40385	53748	53748					-0.04690236237956924
TNNKEYEKQDP	11	Unmodified	_TNNKEYEKQDP_					0	0	0			REV__ENSG00000173114|ENST00000308478|LRRN3	REV__ENSG00000173114|ENST00000308478|LRRN3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	455.880884	1364.62082	0.10666	4.8624E-05	-0.59548	-0.00027147	-0.48882	-0.00022284	455.88074543791276	22.208	0.20393	22.208	22.113	22.317	0	0.1195	-0.00029055	NaN	2.4348	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1990400	+		55060	21194	40060	40385							-0.04690236237956924
TNNKEYEKQDP	11	Unmodified	_TNNKEYEKQDP_					0	0	0			REV__ENSG00000173114|ENST00000308478|LRRN3	REV__ENSG00000173114|ENST00000308478|LRRN3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	455.880884	1364.62082	-0.56636	-0.00025819	-0.31667	-0.00014437	-0.88304	-0.00040256	455.8806853236327	21.349	0.81125	21.969	21.575	22.387	0.61932	-0.1195	9.0749E-05	NaN	2.4348	48	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30351000	+		55061	21194	40060	40385							-0.04690236237956924
TNNLEIFKY	9	Unmodified	_TNNLEIFKY_					0	0	0		tr|U7SLQ6|U7SLQ6_FUSNUTrksystempotassiumuptakeproteinTrkHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02135PE=4SV=1	tr|U7SLQ6|U7SLQ6_FUSNUTrksystempotassiumuptakeproteinTrkHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02135PE=4SV=1	tr|U7SLQ6|U7SLQ6_FUSNUTrksystempotassiumuptakeproteinTrkHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02135PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	571.6736450195312	2	571.298039	1140.58152	-0.18869	-0.0001078	0.27414	0.00015661	0.085448	4.8816E-05	571.7997047042923	62.276	0.61425	62.276	61.994	62.609	0					21	11	3	0	0	0	0.75519	1	22550	22550		20.454	20.454	1	2798000			55062	29507	40061	40386	53749	53749					0.01685708269155839
TNNLEIFKY	9	Unmodified	_TNNLEIFKY_					0	0	0		tr|U7SLQ6|U7SLQ6_FUSNUTrksystempotassiumuptakeproteinTrkHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02135PE=4SV=1	tr|U7SLQ6|U7SLQ6_FUSNUTrksystempotassiumuptakeproteinTrkHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02135PE=4SV=1	tr|U7SLQ6|U7SLQ6_FUSNUTrksystempotassiumuptakeproteinTrkHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02135PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	571.348876953125	2	571.298039	1140.58152	-0.61117	-0.00034916	0.076497	4.3703E-05	-0.53467	-0.00030545	571.2979013769624	61.617	0.45322	62.362	62.02	62.473	0.74503					21	8	3	0	0	0	0.4867	1	23365	23365		20.454	4.3045	1	2447300			55063	29507	40061	40386	53750	53750					0.01685708269155839
TNNPVMLLD	9	Unmodified	_TNNPVMLLD_					0	0	0		tr|U7T2B6|U7T2B6_FUSNULonproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lonPE=2SV=1	tr|U7T2B6|U7T2B6_FUSNULonproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lonPE=2SV=1	tr|U7T2B6|U7T2B6_FUSNULonproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lonPE=2SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	508.6870422363281	2	508.757692	1015.50083	-0.5356	-0.00027249	-4.1602	-0.0021165	-4.6958	-0.002389	508.7555054399845	27.67	0.3541	27.67	27.432	27.786	0					8	6	2	0	0	0	0.53367	1	8367	8367		18.146	3.3081	1	1217000			55064	29928	40062	40387	53751	53751					-0.006298960453932523
TNPQIAFE	8	Unmodified	_TNPQIAFE_					0	0	0			REV__ENSG00000147065|ENST00000360270|MSN	REV__ENSG00000147065|ENST00000360270|MSN	MULTI-MSMS	A375_MHC_IP_R2	2	460.629150390625	2	460.229625	918.444697	-0.30685	-0.00014122	0.19525	8.9859E-05	-0.1116	-5.1361E-05	460.22957021062285	87.12	0.55568	87.853	87.612	88.167	0.73301					15	10	2	0	0	0	0.74466	1	33159	33159		21.747	0	1	1602100	+		55065	19564	40063	40388	53752	53752					-0.017787808905723068
TNPQIAFE	8	Unmodified	_TNPQIAFE_					0	0	0			REV__ENSG00000147065|ENST00000360270|MSN	REV__ENSG00000147065|ENST00000360270|MSN	MULTI-MATCH	A375_MHC_IP_R1	1		2	460.229625	918.444697	-0.22051	-0.00010149	0.3052	0.00014046	0.084689	3.8977E-05	460.2297274004795	87.95	0.45874	87.95	87.696	88.154	0	0.048399	3.553E-05	NaN	21.747	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1718900	+		55066	19564	40063	40388							-0.017787808905723068
TNPQIAFE	8	Unmodified	_TNPQIAFE_					0	0	0			REV__ENSG00000147065|ENST00000360270|MSN	REV__ENSG00000147065|ENST00000360270|MSN	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	460.229625	918.444697	-0.30685	-0.00014122	0.19525	8.9859E-05	-0.1116	-5.1361E-05	460.22957021062285	87.12	0.55568	87.853	87.612	88.167	0.73301	-0.048399	-6.5678E-05	NaN	21.747	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1602100	+		55067	19564	40063	40388							-0.017787808905723068
TNPRVTLAPPW	11	Unmodified	_TNPRVTLAPPW_					0	0	0		nc|ENSG00000197283|Q96PV0-3|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1	nc|ENSG00000197283|Q96PV0-3|SYNGAP1	nc|ENSG00000197283|Q96PV0-3|SYNGAP1	MULTI-MSMS	A375_MHC_IP_R2	2	418.2994079589844	3	417.899662	1250.67716	-0.34923	-0.00014594	-0.11242	-4.6978E-05	-0.46164	-0.00019292	417.89961213054255	34.297	0.56102	35.05	34.803	35.364	0.75225					28	10	4	0	0	0	0.72651	1	12351	12351		12.228	1.1623	1	8927400			55068	9140	40064	40389	53753	53753					0.06184481180025614
TNPSIDHDIAH	11	Unmodified	_TNPSIDHDIAH_					0	0	0		ARHGAP21|p.S812N|1|0.5|ENSG00000107863|chr10:24607891-24607891|C/T|missense_variant	ARHGAP21|p.S812N|1|0.5|ENSG00000107863|chr10:24607891-24607891|C/T|missense_variant	ARHGAP21|p.S812N|1|0.5|ENSG00000107863|chr10:24607891-24607891|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	610.6887817382812	2	610.288734	1218.56291	-0.60397	-0.0003686	0.036378	2.2201E-05	-0.56759	-0.0003464	610.2888141559373	67.034	0.6642	67.034	66.684	67.348	0					18	12	2	0	0	0	0.72801	1	24283	24283		10.8	1.2555	1	3446500			55069	173	40065	40390	53754	53754					-0.03762453372701202
TNPSVPLDP	9	Unmodified	_TNPSVPLDP_					0	0	0		nc|ENSG00000171105|P06213-2|INSR;ENSG00000171105|ENST00000302850|INSR	nc|ENSG00000171105|P06213-2|INSR	nc|ENSG00000171105|P06213-2|INSR	MULTI-SECPEP	A375_MHC_IP_R2	2	470.64312744140625	2	470.242732	938.470912	-1.0974	-0.00051604	1.5544	0.00073093	0.45697	0.00021489	470.24336676189614	36.768	0.40751	37.539	37.258	37.665	0.7709					10	7	2	0	0	0	0.65527	1	13455	13455		12.241	2.1667	1	2693200			55070	7574	40066	40391	53755	53755					-0.0007851171908441756
TNQGLTLEV	9	Unmodified	_TNQGLTLEV_					0	0	0			REV__ENST00000461527.6_1_13:50989243-50989330:+|nuORF	REV__ENST00000461527.6_1_13:50989243-50989330:+|nuORF	MSMS	A375_MHC_IP_R2	2	487.6874084472656	2	487.761289	973.508025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.698	1	32.435	31.935	32.935	0.73692								0	0	0	0.12472	1	11223	11223		34.402	7.5181	1		+		55071	24977	40067	40392	53756	53756					0.020211598266882902
TNQLWELYL	9	Unmodified	_TNQLWELYL_					0	0	0			REV__tr|U7T3K1|U7T3K1_FUSNURloB-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00306PE=4SV=1	REV__tr|U7T3K1|U7T3K1_FUSNURloB-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00306PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	590.7054443359375	2	590.305864	1178.59717	-0.55291	-0.00032639	-0.45529	-0.00026876	-1.0082	-0.00059515	590.3055419749436	126.87	0.30394	127.13	126.96	127.26	0.26593					9	5	2	0	0	0	0.13797	1	49703	49703		43.858	0.085901	1	12221000	+		55072	28779	40068	40393	53757	53757					0.015019947861901528
TNRHVHHPD	9	Unmodified	_TNRHVHHPD_					0	0	0			REV__nc|ENSG00000172869|Q9Y485|DMXL1	REV__nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-SECPEP	A375_MHC_IP_R2	2	557.1371459960938	2	556.770845	1111.52714	-0.61706	-0.00034356	1.7975	0.0010008	1.1805	0.00065725	556.7721665831044	43.463	0.45624	44.236	43.977	44.433	0.7724					13	8	2	0	0	0	0.77396	1	16105	16105		6.2058	6.2058	1	1564700	+		55073	21176	40069	40394	53758	53758					-0.024164460390466047
TNRRKEVT	8	Unmodified	_TNRRKEVT_					0	0	0			REV__ENST00000522138.1_1_5:169064330-169108764:+|nuORF	REV__ENST00000522138.1_1_5:169064330-169108764:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	501.99713134765625	2	502.285797	1002.55704	-0.32267	-0.00016207	0.049775	2.5001E-05	-0.27289	-0.00013707	502.28572818231123	36.059	0.81278	36.059	35.676	36.489	0					37	15	4	0	0	0	0.96266	1	12177	12177		3.9444	0	1	28361000	+		55074	18784	40070	40395	53759	53759					0.055864929062863666
TNRRYFIEKYE	11	Unmodified	_TNRRYFIEKYE_					0	0	0			REV__ENSG00000115339|ENST00000392701|GALNT3	REV__ENSG00000115339|ENST00000392701|GALNT3	MULTI-MSMS	A375_MHC_IP_R1	1	506.9905090332031	3	506.928169	1517.76268	-0.64636	-0.00032766	0.28279	0.00014336	-0.36357	-0.0001843	506.92856383221124	36.511	0.45747	36.511	36.287	36.745	0					16	8	3	0	0	0	0.73698	1	12255	12255		2.2527	0	1	2716800	+		55075	17875	40071	40396	53760	53760					0.02450601575037581
TNRRYFIEKYE	11	Unmodified	_TNRRYFIEKYE_					0	0	0			REV__ENSG00000115339|ENST00000392701|GALNT3	REV__ENSG00000115339|ENST00000392701|GALNT3	MSMS	A375_MHC_IP_R2	2	506.9903564453125	3	506.928169	1517.76268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.581	1	35.344	34.844	35.844	0.76236								0	0	0	0.16323	1	12488	12488		1.9275	0.47239	1		+		55076	17875	40071	40396	53761	53761					0.02450601575037581
TNRRYFIEKYE	11	Unmodified	_TNRRYFIEKYE_					0	0	0			REV__ENSG00000115339|ENST00000392701|GALNT3	REV__ENSG00000115339|ENST00000392701|GALNT3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	506.928169	1517.76268	-0.64636	-0.00032766	0.28279	0.00014336	-0.36357	-0.0001843	506.92856383221124	36.511	0.45747	36.511	36.287	36.745	0	0.078731	-0.0011529	NaN	2.2527	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2716800	+		55077	17875	40071	40396							0.02450601575037581
TNRVNFYNTV	10	Unmodified	_TNRVNFYNTV_					0	0	0		ENST00000435378.5_1_1:222997228-223000803:+|nuORF	ENST00000435378.5_1_1:222997228-223000803:+|nuORF	ENST00000435378.5_1_1:222997228-223000803:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	409.9255676269531	3	409.875405	1226.60439	0.00081676	3.3477E-07	-0.5833	-0.00023908	-0.58248	-0.00023875	409.8751656175121	30.45	0.60531	31.169	30.911	31.517	0.71857					32	11	5	0	0	0	0.57505	1	10778	10778		19.626	8.1081	1	11756000			55078	11910	40072	40397	53762	53762					0.00014727386610502435
TNSFQYVVRW	10	Unmodified	_TNSFQYVVRW_					0	0	0			REV__ENST00000304129.8_1_10:116054696-116054744:-|nuORF	REV__ENST00000304129.8_1_10:116054696-116054744:-|nuORF	MSMS	A375_MHC_IP_R1	1	433.73101806640625	3	433.887533	1298.64077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.859	1	18.859	18.359	19.359	0								0	0	0	0.15629	1	4526	4526		0.13989	0.017027	1		+		55079	23451	40073	40398	53763	53763					0.003396042833401225
TNSHFFLF	8	Unmodified	_TNSHFFLF_					0	0	0		ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-SECPEP	A375_MHC_IP_R2	2	506.16094970703125	2	506.747985	1011.48142	-0.89448	-0.00045328	-1.9965	-0.0010117	-2.8909	-0.001465	506.7458763948315	36.224	0.71267	36.995	36.749	37.461	0.7709					15	13	2	0	0	0	0.87643	1	13303	13303		25.399	0	1	1947000			55080	4386	40074	40399	53764	53764					-0.02386484273995393
TNTCKWEK	8	Unmodified	_TNTCKWEK_					0	0	0			REV__nc|ENSG00000172534|P51610-3|HCFC1	REV__nc|ENSG00000172534|P51610-3|HCFC1	MSMS	A375_MHC_IP_R2	2	505.2014465332031	2	505.242209	1008.46987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.33	1	138.42	137.92	138.92	0.083969								0	0	0	0.16876	1	54251	54251		5.2307	0	1		+		55081	21152	40075	40400	53765	53765					-0.03403049359656052
TNVAAKTIGQ	10	Unmodified	_TNVAAKTIGQ_					0	0	0			REV__tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1	REV__tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	501.6796569824219	2	501.782556	1001.55056	-0.60439	-0.00030327	-2.0551	-0.0010312	-2.6595	-0.0013345	501.78206821832674	36.767	0.85986	36.767	36.389	37.249	0					34	15	4	0	0	0	0.90513	1	12288	12288		8.1555	4.559	1	3786900	+		55082	28683	40076	40401	53766	53766					0.04984554954921805
TNVSEEVTV	9	Unmodified	_TNVSEEVTV_					0	0	0		ENST00000579889.1_1_17:46128116-46128182:+|nuORF	ENST00000579889.1_1_17:46128116-46128182:+|nuORF	ENST00000579889.1_1_17:46128116-46128182:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	489.64263916015625	2	489.242929	976.471305	-0.20328	-9.9452E-05	-0.22818	-0.00011164	-0.43146	-0.00021109	489.2427662243676	55.94	0.71064	55.94	55.687	56.397	0					30	13	3	0	0	0	0.34746	1	20039	20039		31.268	0	1	3736900			55083	13667	40077	40402	53767	53767					-0.017871367898806056
TNVTENVL	8	Unmodified	_TNVTENVL_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-SECPEP	A375_MHC_IP_R2	2	445.6710510253906	2	445.234907	888.455261	-0.51384	-0.00022878	1.0186	0.0004535	0.50473	0.00022472	445.2352955555975	50.558	0.70984	51.312	50.955	51.665	0.75406					24	13	3	0	0	0	0.972	1	18896	18896		3.5965	0	1	1788000			55084	3637	40078	40403	53768	53768					0.00657201763874582
TNWLKELW	8	Unmodified	_TNWLKELW_					0	0	0		ENST00000513040.5_2_5:125695875-125801126:+|nuORF	ENST00000513040.5_2_5:125695875-125801126:+|nuORF	ENST00000513040.5_2_5:125695875-125801126:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	545.21240234375	2	545.290017	1088.56548	-0.82336	-0.00044897	0.7709	0.00042037	-0.052453	-2.8602E-05	545.2903842582183	82.475	1.3678	83.218	82.787	84.155	0.74293					58	26	4	0	0	0	0.73111	1	31559	31559		25.399	3.6527	1	23994000			55085	12924	40079	40404	53769	53769					0.024740468228856116
TNYKNHVRI	9	Unmodified	_TNYKNHVRI_					0	0	0		nc|ENSG00000166478|P52747-2|ZNF143;nc|ENSG00000166478|P52747-3|ZNF143;ENSG00000166478|ENST00000396602|ZNF143;ZNF76|p.H309Y|1|0.37|ENSG00000065029|chr6:35291731-35291731|C/T|missense_variant;ENST00000486891.5_1_6:35248907-35259582:+|nuORF;nc|ENSG00000065029|P36508-2|ZNF76;ENSG00000065029|ENST00000373953|ZNF76	nc|ENSG00000166478|P52747-2|ZNF143	nc|ENSG00000166478|P52747-2|ZNF143	MULTI-SECPEP	A375_MHC_IP_R1	1	573.6098022460938	2	572.814722	1143.61489	-0.57095	-0.00032705	0.31372	0.0001797	-0.25723	-0.00014735	572.8148416156982	30.517	0.65683	30.517	30.2	30.857	0					24	12	2	0	0	0	0.79191	1	9835	9835		6.7232	1.4925	1	4374200			55086	7079	40080	40405	53770	53770					0.048827548317149194
TNYVYLKL	8	Unmodified	_TNYVYLKL_					0	0	0			REV__nc|ENSG00000115806|Q9H8Y8-2|GORASP2	REV__nc|ENSG00000115806|Q9H8Y8-2|GORASP2	MSMS	A375_MHC_IP_R2	2	507.3287048339844	2	507.286943	1012.55933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.798	1	27.458	26.958	27.958	0.65992								0	0	0	0.16876	1	9092	9092		18.135	0	1		+		55087	17913	40081	40406	53771	53771					0.05355528591371694
TPALEKPAPK	10	Unmodified	_TPALEKPAPK_					0	0	0			REV__nc|ENSG00000116690|Q92954-4|PRG4	REV__nc|ENSG00000116690|Q92954-4|PRG4	MULTI-SECPEP	A375_MHC_IP_R1	1	1051.494873046875	1	1051.61462	1050.60735	-0.27799	-0.00029234	-0.53897	-0.00056678	-0.81695	-0.00085912	1052.614572204757	121.89	0.45702	121.89	121.62	122.07	0					11	8	2	0	0	0	0.93194	1	45190	45190		0.26902	0	1	18769000	+		55088	17965	40082	40407	53772	53772					0.08406602511422534
TPAPALAPV	9	Unmodified	_TPAPALAPV_					0	0	0		GPR179|p.K1829Pfs*6|1|0.44|ENSG00000277399|chr17:38328074-38328084|TCCAATCCCTT/-|frameshift_variant;nc|ENSG00000277399|Q6PRD1|GPR179;ENSG00000277399|ENST00000616987|GPR179	GPR179|p.K1829Pfs*6|1|0.44|ENSG00000277399|chr17:38328074-38328084|TCCAATCCCTT/-|frameshift_variant	GPR179|p.K1829Pfs*6|1|0.44|ENSG00000277399|chr17:38328074-38328084|TCCAATCCCTT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	836.8167114257812	1	836.48763	835.480354	-0.70939	-0.0005934	2.2754	0.0019033	1.566	0.0013099	836.4885481979279	120.26	0.25401	120.79	120.6	120.85	0.5321					5	4	2	0	0	0	0.69504	1	45816	45816		4.3292	3.6389	1	16330000			55089	10028	40083	40408	53773	53773					0.056033013570868206
TPAPSAKSS	9	Unmodified	_TPAPSAKSS_					0	0	0		ENSG00000072832|ENST00000324989|CRMP1;ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000072832|Q14194|CRMP1;ENST00000506216.5_1_4:5749932-5890196:-|nuORF	ENSG00000072832|ENST00000324989|CRMP1	ENSG00000072832|ENST00000324989|CRMP1	MULTI-MSMS	A375_MHC_IP_R2	2	423.6216125488281	2	423.2218	844.429047	-0.095808	-4.0548E-05	-0.86474	-0.00036598	-0.96055	-0.00040652	423.22134928901846	108.66	1.2239	109.41	108.86	110.08	0.74684					30	23	2	0	0	0	0.73415	1	41073	41073		3.9444	0	1	1093400			55090	1550	40084	40409	53774	53774					0.0006093259238468818
TPAPSAKSS	9	Unmodified	_TPAPSAKSS_					0	0	0		ENSG00000072832|ENST00000324989|CRMP1;ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000072832|Q14194|CRMP1;ENST00000506216.5_1_4:5749932-5890196:-|nuORF	ENSG00000072832|ENST00000324989|CRMP1	ENSG00000072832|ENST00000324989|CRMP1	MULTI-MATCH	A375_MHC_IP_R1	1		2	423.2218	844.429047	0.15203	6.4341E-05	-0.58342	-0.00024692	-0.4314	-0.00018258	423.22113031149206	109.65	0.35799	109.65	109.42	109.78	0	0.12112	0.00021368	NaN	3.9444	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	466510			55091	1550	40084	40409							0.0006093259238468818
TPARLRVFREF	11	Unmodified	_TPARLRVFREF_					0	0	0		CON__P01030;CON__ENSEMBL:ENSBTAP00000007350	CON__P01030	CON__P01030	MSMS	A375_MHC_IP_R2	2	696.8006591796875	2	696.398953	1390.78335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.239	1	81.984	81.484	82.484	0.74474								0	0	0	0.16307	1	30848	30848		2.7352	0	1			+	55092	567	40085	40410	53775	53775					0.10359236745352973
TPASESVTLRY	11	Unmodified	_TPASESVTLRY_					0	0	0			REV__ENSG00000071991|ENST00000262150|CDH19	REV__ENSG00000071991|ENST00000262150|CDH19	MSMS	A375_MHC_IP_R1	1	612.7135620117188	2	612.31696	1222.61937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.786	1	95.786	95.286	96.286	0								0	0	0	0.16179	1	35206	35206		9.3831	2.66	1		+		55093	16591	40086	40411	53776	53776					0.01696174463972966
TPAVHASLDK	10	Unmodified	_TPAVHASLDK_					0	0	0		CON__P01966;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	CON__P01966;ENSG00000206172|ENST00000320868|HBA1	CON__P01966	MULTI-SECPEP	A375_MHC_IP_R2	2	520.1820068359375	2	519.782556	1037.55056	-0.95044	-0.00049402	0.001656	8.6078E-07	-0.94878	-0.00049316	519.782549808491	19.328	0.45686	19.931	19.733	20.19	0.60308					11	8	2	0	0	0	0.35635	1	5960	5960		51.488	36.24	1	1468700		+	55094	579;8913	40087	40412	53777	53777					0.033285549548736526
TPDELFHR	8	Unmodified	_TPDELFHR_					0	0	0			REV__ENST00000590152.1_1_19:9267386-9267698:+|nuORF	REV__ENST00000590152.1_1_19:9267386-9267698:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	508.71099853515625	2	507.753798	1013.49304	-0.56496	-0.00028686	-0.38244	-0.00019418	-0.9474	-0.00048104	507.7538093881315	43.627	0.80897	44.397	43.974	44.783	0.76963					34	15	3	0	0	0	0.77603	1	16237	16237		9.3474	0.75416	1	8351600	+		55095	26428	40088	40413	53778	53778					-0.013162872506768508
TPDGSLDLGL	10	Unmodified	_TPDGSLDLGL_					0	0	0			REV__nc|ENSG00000168803|Q6DHV7-3|ADAL	REV__nc|ENSG00000168803|Q6DHV7-3|ADAL	MSMS	A375_MHC_IP_R2	2	494.16119384765625	2	494.253297	986.492041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.95	0.99999	128.21	127.71	128.71	0.26592								0	0	0	0.15105	1	50226	50226		15.847	1.0089	1		+		55096	20887	40089	40414	53779	53779					-0.0017454641023277873
TPDKRKGLVY	10	Unmodified	_TPDKRKGLVY_					0	0	0		ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	MULTI-MSMS	A375_MHC_IP_R1	1	392.9209289550781	3	392.896029	1175.66626	-0.22655	-8.9009E-05	0.97713	0.00038391	0.75059	0.0002949	392.8965070893409	23.55	0.2037	23.55	23.432	23.635	0					7	3	3	0	0	0	0.70741	1	6505	6505		8.9762	1.0308	1	2698600			55097	4266	40090	40415	53780	53780					0.08545078805764206
TPDLISPTE	9	Unmodified	_TPDLISPTE_					0	0	0			REV__ENST00000308713.9_3_16:29910701-29910773:-|nuORF	REV__ENST00000308713.9_3_16:29910701-29910773:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	973.1591796875	1	972.488418	971.481142	0.19104	0.00018578	-0.088931	-8.6485E-05	0.10211	9.9298E-05	972.4882826742834	88.332	0.66322	88.332	87.898	88.561	0					19	12	2	0	0	0	0.17328	1	32332	32332		39.957	5.8549	1	5168900	+		55098	23484	40091	40416	53781	53781					-0.005739487845175972
TPDLISPTE	9	Unmodified	_TPDLISPTE_					0	0	0			REV__ENST00000308713.9_3_16:29910701-29910773:-|nuORF	REV__ENST00000308713.9_3_16:29910701-29910773:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	972.488418	971.481142	0.19104	0.00018578	-0.088931	-8.6485E-05	0.10211	9.9298E-05	972.4882826742834	88.332	0.66322	88.332	87.898	88.561	0	-0.0046104	5.7906E-05	NaN	39.957	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5168900	+		55099	23484	40091	40416							-0.005739487845175972
TPDLISPTE	9	Unmodified	_TPDLISPTE_					0	0	0			REV__ENST00000308713.9_3_16:29910701-29910773:-|nuORF	REV__ENST00000308713.9_3_16:29910701-29910773:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	972.488418	971.481142	0.043997	4.2786E-05	-0.26192	-0.00025472	-0.21793	-0.00021193	972.4881236634247	87.61	0.55455	88.342	88.016	88.57	0.7318	0.0046104	-0.00011033	NaN	39.957	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5165200	+		55100	23484	40091	40416							-0.005739487845175972
TPDLSALVSLR	11	Unmodified	_TPDLSALVSLR_					0	0	0			REV__KIAA1549|p.P531L|1|0.17|ENSG00000122778|chr7:138918034-138918034|G/A|missense_variant	REV__KIAA1549|p.P531L|1|0.17|ENSG00000122778|chr7:138918034-138918034|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	586.73681640625	2	586.337695	1170.66084	-0.6201	-0.00036359	-0.058538	-3.4323E-05	-0.67863	-0.00039791	586.3374691483135	141.78	1.585	141.78	140.7	142.29	0					55	30	2	0	0	0	0.73332	1	54438	54438		5.7319	0	1	2775900	+		55101	26844	40092	40417	53782	53782					0.08233355223273975
TPDSKKIS	8	Unmodified	_TPDSKKIS_					0	0	0		ENSG00000145241|ENST00000273853|CENPC;nc|ENSG00000145241|Q03188-2|CENPC;ENST00000510189.5_1_4:68359569-68411187:-|nuORF	ENSG00000145241|ENST00000273853|CENPC	ENSG00000145241|ENST00000273853|CENPC	MSMS	A375_MHC_IP_R1	1	438.29461669921875	2	438.245275	874.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.879	1	30.879	30.379	31.379	0								0	0	0	0.16876	1	9854	9854		12.532	3.1841	1				55102	5544	40093	40418	53783	53783					0.03373792143531773
TPEELGLDKV	10	Unmodified	_TPEELGLDKV_					0	0	0		ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6167602539062	2	550.795329	1099.5761	-1.2213	-0.00067268	0.21369	0.0001177	-1.0076	-0.00055498	550.7953682951788	56.802	0.61167	57.552	57.255	57.867	0.75015					20	11	2	0	0	0	0.13071	1	21555	21555		89.609	53.102	1	7569900			55103	8174	40094	40419	53784	53784					0.030299846866682856
TPEETSRLSYD	11	Unmodified	_TPEETSRLSYD_					0	0	0			REV__ENSG00000019505|ENST00000020926|SYT13	REV__ENSG00000019505|ENST00000020926|SYT13	MULTI-SECPEP	A375_MHC_IP_R1	1	649.6983642578125	2	649.298964	1296.58338	-0.41363	-0.00026857	-0.18607	-0.00012082	-0.59971	-0.00038939	649.2987706006237	47.153	0.56481	47.153	46.952	47.517	0					21	10	3	0	0	0	0.76597	1	16571	16571		28.495	28.495	1	6572600	+		55104	16260	40095	40420	53785	53785					-0.05305327503560875
TPEEYACT	8	Unmodified	_TPEEYACT_					0	0	0			REV__nc|ENSG00000156515|P19367-4|HK1	REV__nc|ENSG00000156515|P19367-4|HK1	MSMS	A375_MHC_IP_R1	1	457.17816162109375	2	457.184026	912.353498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.53	1	141.53	141.03	142.03	0								0	0	0	0.16876	1	54321	54321		2.5775	0	1		+		55105	19987	40096	40421	53786	53786					-0.10618412650205755
TPEFLRKF	8	Unmodified	_TPEFLRKF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;EEF1G|p.P54S|1|0.37|ENSG00000254772|chr11:62572595-62572595|G/A|missense_variant	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1400146484375	2	519.292559	1036.57057	-0.50491	-0.00026219	-0.50366	-0.00026155	-1.0086	-0.00052374	519.2921908973476	55.426	0.35614	55.426	55.228	55.584	0					9	6	2	0	0	0	0.95424	1	19826	19826		9.3831	0.78985	1	1558100			55106	9882	40097	40422	53787	53787					0.053743506855198575
TPEGEYISL	9	Unmodified	_TPEGEYISL_					0	0	0		KCNJ14|p.P249S|1|0.33|ENSG00000182324|chr19:48464211-48464211|C/T|missense_variant	KCNJ14|p.P249S|1|0.33|ENSG00000182324|chr19:48464211-48464211|C/T|missense_variant	KCNJ14|p.P249S|1|0.33|ENSG00000182324|chr19:48464211-48464211|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	504.68023681640625	2	504.747847	1007.48114	-0.37184	-0.00018769	1.1714	0.00059126	0.79956	0.00040357	504.7482646226662	74.691	0.8632	74.691	74.146	75.009	0					18	13	2	0	0	0	0.62767	1	27125	27125		3.9444	2.1002	1	1260100			55107	14198	40098	40423	53788	53788					-0.022299487845202748
TPEHPLQTL	9	Unmodified	_TPEHPLQTL_					0	0	0		ENST00000446167.1_1_1:44410354-44410405:-|nuORF	ENST00000446167.1_1_1:44410354-44410405:-|nuORF	ENST00000446167.1_1_1:44410354-44410405:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	517.7050170898438	2	518.277106	1034.53966	-0.52102	-0.00027003	1.4371	0.00074482	0.91608	0.00047478	518.2776505719446	75.215	0.45446	75.215	74.958	75.413	0					14	8	2	0	0	0	0.60917	1	27470	27470		5.7319	0.97584	1	1123500			55108	12030	40099	40424	53789	53789					0.023771525806068894
TPEQIEKIY	9	Unmodified	_TPEQIEKIY_					0	0	0		ENSG00000086288|ENST00000199447|NME8	ENSG00000086288|ENST00000199447|NME8	ENSG00000086288|ENST00000199447|NME8	MULTI-MSMS	A375_MHC_IP_R2	2	374.91424560546875	3	374.201007	1119.58119	0.31878	0.00011929	1.7606	0.00065882	2.0794	0.00077811	374.2010591658021	32.271	0.76223	33.008	32.605	33.367	0.73691					31	14	4	0	0	0	0.53367	1	11468	11468		12.873	1.3547	1	1904300			55109	1834	40100	40425	53790	53790					0.026182885492971764
TPEQLTHYL	9	Unmodified	_TPEQLTHYL_					0	0	0			REV__AOC1|p.A158P|1|0.33|ENSG00000002726|chr7:150856942-150856942|G/C|missense_variant	REV__AOC1|p.A158P|1|0.33|ENSG00000002726|chr7:150856942-150856942|G/C|missense_variant	MSMS	A375_MHC_IP_R1	1	551.6312255859375	2	551.282389	1100.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.47	1	111.47	110.97	111.97	0								0	0	0	0.15486	1	40862	40862		12.532	2.3482	1		+		55110	15414	40101	40426	53791	53791					0.003971352350390589
TPEQRPFARKR	11	Unmodified	_TPEQRPFARKR_					0	0	0		tr|U7ST12|U7ST12_FUSNUMalatedehydrogenase(Oxaloacetate-decarboxylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01238PE=3SV=1	tr|U7ST12|U7ST12_FUSNUMalatedehydrogenase(Oxaloacetate-decarboxylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01238PE=3SV=1	tr|U7ST12|U7ST12_FUSNUMalatedehydrogenase(Oxaloacetate-decarboxylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01238PE=3SV=1	MSMS	A375_MHC_IP_R1	1	693.38818359375	2	693.391659	1384.76877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.418	1	82.418	81.918	82.918	0								0	0	0	0.16312	1	30140	30140		2.4985	0	1				55111	29657	40102	40427	53792	53792					0.09177164597190313
TPFFSLGMPDP	11	Unmodified	_TPFFSLGMPDP_					0	0	0			REV__DRGX|p.L193F|1|0.27|ENSG00000165606|chr10:49366331-49366331|G/A|missense_variant	REV__DRGX|p.L193F|1|0.27|ENSG00000165606|chr10:49366331-49366331|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	403.27630615234375	3	403.526725	1207.55835	-0.30191	-0.00012183	0.010249	4.1358E-06	-0.29166	-0.00011769	403.5264210947489	20.061	1.1147	20.671	20.298	21.413	0.61029					33	21	3	0	0	0	0.99227	1	6279	6279		2.6312	0.72486	1	2967600	+		55112	16035	40103	40428	53793	53793					-0.037130538398514545
TPFKHEHSL	9	Unmodified	_TPFKHEHSL_					0	0	0			REV__nc|ENSG00000101605|P52179-2|MYOM1	REV__nc|ENSG00000101605|P52179-2|MYOM1	MULTI-SECPEP	A375_MHC_IP_R1	1	365.94561767578125	3	365.857574	1094.55089	0.11565	4.2312E-05	-0.043744	-1.6004E-05	0.071909	2.6308E-05	365.8575853007327	28.212	0.20065	28.212	28.088	28.288	0					5	3	2	0	0	0	0.73363	1	8694	8694		4.1895	2.4472	1	1572800	+		55113	17178	40104	40429	53794	53794					0.00739974674752375
TPFLLFIIA	9	Unmodified	_TPFLLFIIA_					0	0	0		ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000018625|ENST00000361216|ATP1A2	ENST00000472488.5_1_1:160085570-160106822:+|nuORF	ENST00000472488.5_1_1:160085570-160106822:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	517.7051391601562	2	517.817879	1033.6212	-0.72411	-0.00037496	-1.5606	-0.00080811	-2.2847	-0.0011831	517.8165356251639	74.073	0.40544	74.81	74.553	74.958	0.73752					13	7	3	0	0	0	0.71541	1	28105	28105		7.2892	0	1	795960			55114	1048	40105	40430	53795	53795					0.10573880010520043
TPFLPERNPR	10	Unmodified	_TPFLPERNPR_					0	0	0		ENST00000482818.1_1_22:29724812-29725148:-|nuORF	ENST00000482818.1_1_22:29724812-29725148:-|nuORF	ENST00000482818.1_1_22:29724812-29725148:-|nuORF	MSMS	A375_MHC_IP_R2	2	409.6155700683594	3	409.559528	1225.65676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.581	1	24.211	23.711	24.711	0.63014								0	0	0	0.15324	1	7614	7614		10.315	0.55098	1				55115	12531	40106	40431	53796	53796					0.052953105202277584
TPFNPLRKI	9	Unmodified	_TPFNPLRKI_					0	0	0		nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A	nc|ENSG00000144285|P35498-3|SCN1A	nc|ENSG00000144285|P35498-3|SCN1A	MULTI-SECPEP	A375_MHC_IP_R2	2	362.3006286621094	3	362.553715	1084.63931	-0.41975	-0.00015218	0.084163	3.0513E-05	-0.33559	-0.00012167	362.8882069569814	24.34	0.20318	24.983	24.806	25.009	0.64368					5	3	2	0	0	0	0.74412	1	7909	7909		3.8763	0	1	1204000			55116	5477	40107	40432	53797	53797					0.10038014985229893
TPFSNLSLAP	10	Unmodified	_TPFSNLSLAP_					0	0	0		AXIN2|p.P740L|1|0.14|ENSG00000168646|chr17:65535644-65535644|G/A|missense_variant	AXIN2|p.P740L|1|0.14|ENSG00000168646|chr17:65535644-65535644|G/A|missense_variant	AXIN2|p.P740L|1|0.14|ENSG00000168646|chr17:65535644-65535644|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	524.1790771484375	2	523.779482	1045.54441	-0.41371	-0.00021669	0.67127	0.0003516	0.25756	0.0001349	523.7793098325556	97.616	0.456	97.616	97.338	97.794	0					11	8	2	0	0	0	0.6774	1	35846	35846		21.537	5.6898	1	2804900			55117	220	40108	40433	53798	53798					0.02346036723361067
TPFVDCQL	8	Unmodified	_TPFVDCQL_					0	0	0			REV__ENST00000267811.9_1_15:57211080-57213240:+|nuORF	REV__ENST00000267811.9_1_15:57211080-57213240:+|nuORF	MSMS	A375_MHC_IP_R1	1	461.63726806640625	2	461.720578	921.426604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.629	1	88.629	88.129	89.129	0								0	0	0	0.16876	1	32542	32542		16.942	2.3606	1		+		55118	23262	40109	40434	53799	53799					-0.037252391369293036
TPGDENEHAHV	11	Unmodified	_TPGDENEHAHV_					0	0	0		APP|p.F391V|1|0.26|ENSG00000142192|chr21:25982397-25982397|A/C|missense_variant	APP|p.F391V|1|0.26|ENSG00000142192|chr21:25982397-25982397|A/C|missense_variant	APP|p.F391V|1|0.26|ENSG00000142192|chr21:25982397-25982397|A/C|missense_variant	MSMS	A375_MHC_IP_R1	1	402.5802307128906	3	402.510903	1204.51088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.573	1	82.573	82.073	83.073	0								0	0	0	0.1628	1	30196	30196		4.1166	2.2103	1				55119	164	40110	40435	53800	53800					-0.08319616786479855
TPGIVRNSKKR	11	Unmodified	_TPGIVRNSKKR_					0	0	0		ENSG00000153391|ENST00000334598|INO80C;nc|ENSG00000153391|Q6PI98-4|INO80C;ENST00000589053.1_1_18:33077601-33077838:-|nuORF;ENST00000585971.1_1_18:33069229-33077838:-|nuORF;ENST00000586449.1_1_18:33067727-33077880:-|nuORF;ENST00000283410.4_1_18:33059207-33077880:-|nuORF;nc|ENSG00000153391|Q6PI98-3|INO80C	ENSG00000153391|ENST00000334598|INO80C	ENSG00000153391|ENST00000334598|INO80C	MULTI-MSMS	A375_MHC_IP_R2	2	628.782470703125	2	628.383303	1254.75205	-0.84131	-0.00052867	-0.81361	-0.00051126	-1.6549	-0.0010399	628.3826486851402	129.94	2.0281	130.16	129.59	131.62	0.21419					143	39	5	0	0	0	0.7342	1	50995	50995		4.897	0	1	86265000			55120	6029	40111	40436	53801	53801					0.13486663711250912
TPGKKAAA	8	Unmodified	_TPGKKAAA_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-SECPEP	A375_MHC_IP_R1	1	372.5973815917969	2	372.224146	742.433738	0.0050498	1.8797E-06	0.33565	0.00012494	0.3407	0.00012682	372.2242647584715	26.386	0.45573	26.386	26.17	26.626	0					14	8	2	0	0	0	0.972	1	7940	7940		13.508	0.97634	1	5139700			55121	3266	40112	40437	53802	53802					0.05221861525797067
TPGKKAAA	8	Unmodified	_TPGKKAAA_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-SECPEP	A375_MHC_IP_R2	2	372.5970458984375	2	372.224146	742.433738	0.0012966	4.8261E-07	0.061862	2.3027E-05	0.063159	2.3509E-05	372.2241431262787	25.701	0.65956	26.361	26.094	26.754	0.65992					19	12	2	0	0	0	0.972	1	8729	8729		12.532	3.9383	1	3917500			55122	3266	40112	40437	53803	53803					0.05221861525797067
TPGLIGQP	8	Unmodified	_TPGLIGQP_					0	0	0		ENSG00000187498|ENST00000375820|COL4A1	ENSG00000187498|ENST00000375820|COL4A1	ENSG00000187498|ENST00000375820|COL4A1	MULTI-SECPEP	A375_MHC_IP_R1	1	392.1239929199219	2	391.723978	781.433404	0.07933	3.1075E-05	1.0928	0.00042808	1.1721	0.00045915	391.7239102532009	53.377	0.60869	53.377	52.946	53.555	0					18	11	2	0	0	0	0.90775	1	19061	19061		26.884	6.43	1	1741600			55123	8827	40113	40438	53804	53804					0.033944418059491
TPGRSGYIY	9	Unmodified	_TPGRSGYIY_					0	0	0			REV__G6PD|p.P481S|1|0.55|ENSG00000160211|chrX:154532204-154532204|G/A|missense_variant	REV__G6PD|p.P481S|1|0.55|ENSG00000160211|chrX:154532204-154532204|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	507.655517578125	2	507.256174	1012.49779	-1.0489	-0.00053207	-0.010859	-5.5085E-06	-1.0598	-0.00053758	507.25611603258585	61.179	1.2608	61.924	61.515	62.776	0.74503					37	24	3	0	0	0	0.58271	1	23192	23192		26.884	6.43	1	5553600	+		55124	20153	40114	40439	53805	53805					-0.007954031079179913
TPHQPHRLYY	10	Unmodified	_TPHQPHRLYY_					0	0	0		ENST00000354618.9_1_1:36769659-36769833:+|nuORF	ENST00000354618.9_1_1:36769659-36769833:+|nuORF	ENST00000354618.9_1_1:36769659-36769833:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	655.758056640625	2	656.333279	1310.652	-0.77539	-0.00050892	-2.9657	-0.0019465	-3.741	-0.0024554	656.3320790299889	87.382	0.50558	88.114	87.712	88.217	0.73245					13	9	2	0	0	0	0.89109	1	33124	33124		1.6526	0.17072	1	2613600			55125	10942	40115	40440	53806	53806					0.00910426377481599
TPIQRSRTW	9	Unmodified	_TPIQRSRTW_					0	0	0		ENST00000306801.7_1_17:78882625-78882703:+|nuORF	ENST00000306801.7_1_17:78882625-78882703:+|nuORF	ENST00000306801.7_1_17:78882625-78882703:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	573.21435546875	2	572.814722	1143.61489	-0.73526	-0.00042117	0.19321	0.00011067	-0.54206	-0.0003105	572.8148058901852	29.723	0.60477	30.422	30.134	30.739	0.69872					23	11	3	0	0	0	0.61452	1	10401	10401		20.415	1.1575	1	7211200			55126	10581	40116	40441	53807	53807					0.048827548317149194
TPKALTSIPH	10	Unmodified	_TPKALTSIPH_					0	0	0			REV__ENST00000434365.1_1_X:114937188-114937365:+|nuORF	REV__ENST00000434365.1_1_X:114937188-114937365:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	355.3181457519531	3	355.541475	1063.60259	0.28152	0.00010009	-0.35928	-0.00012774	-0.077758	-2.7646E-05	355.54127147546876	44.344	0.46034	44.344	44.216	44.676	0					14	8	2	0	0	0	0.70174	1	15463	15463		11.518	1.3673	1	2951600	+		55127	24737	40117	40442	53808	53808					0.07333718368658992
TPKFFYTVPN	10	Unmodified	_TPKFFYTVPN_					0	0	0		AADAT|p.L194F|1|0.27|ENSG00000109576|chr4:170073210-170073210|G/A|missense_variant	AADAT|p.L194F|1|0.27|ENSG00000109576|chr4:170073210-170073210|G/A|missense_variant	AADAT|p.L194F|1|0.27|ENSG00000109576|chr4:170073210-170073210|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	404.6210632324219	3	405.213246	1212.61791	0.16421	6.6539E-05	0.18023	7.3031E-05	0.34444	0.00013957	405.5471731237582	43.968	0.85931	44.737	44.278	45.138	0.7691					28	16	2	0	0	0	0.93578	1	16233	16233		5.7834	0	1	2421400			55128	1	40118	40443	53809	53809					0.020105851658627216
TPKFFYTVPN	10	Unmodified	_TPKFFYTVPN_					0	0	0		AADAT|p.L194F|1|0.27|ENSG00000109576|chr4:170073210-170073210|G/A|missense_variant	AADAT|p.L194F|1|0.27|ENSG00000109576|chr4:170073210-170073210|G/A|missense_variant	AADAT|p.L194F|1|0.27|ENSG00000109576|chr4:170073210-170073210|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	405.213246	1212.61791	0.097477	3.9499E-05	1.0388	0.00042093	1.1363	0.00046043	405.21370449864133	44.724	0.86493	44.724	44.318	45.183	0	-0.0062281	0.00059608	NaN	5.7834	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1760900			55129	1	40118	40443							0.020105851658627216
TPKKASSA	8	Unmodified	_TPKKASSA_					0	0	0		nc|ENSG00000155966|P51816-7|AFF2;nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-3|AFF2;nc|ENSG00000155966|P51816-5|AFF2;ENSG00000155966|ENST00000370460|AFF2	nc|ENSG00000155966|P51816-7|AFF2	nc|ENSG00000155966|P51816-7|AFF2	MULTI-MSMS	A375_MHC_IP_R1	1	395.6261901855469	2	395.226885	788.439217	-0.20461	-8.0866E-05	-1.2669	-0.00050073	-1.4716	-0.0005816	395.22643633432165	120.19	0.3048	120.19	119.95	120.25	0					8	5	2	0	0	0	0.77741	1	44526	44526		4.3292	0	1	10948000			55130	6167	40119	40444	53810	53810					0.03653540317611714
TPKKASSA	8	Unmodified	_TPKKASSA_					0	0	0		nc|ENSG00000155966|P51816-7|AFF2;nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-3|AFF2;nc|ENSG00000155966|P51816-5|AFF2;ENSG00000155966|ENST00000370460|AFF2	nc|ENSG00000155966|P51816-7|AFF2	nc|ENSG00000155966|P51816-7|AFF2	MULTI-MSMS	A375_MHC_IP_R2	2	395.626708984375	2	395.226885	788.439217	-0.091038	-3.5981E-05	-1.1309	-0.00044697	-1.222	-0.00048295	395.22635655044394	119.68	0.56017	120.22	119.89	120.45	0.5321					15	10	2	0	0	0	0.77741	1	45565	45565		4.3292	0	1	14114000			55131	6167	40119	40444	53811	53811					0.03653540317611714
TPKLDASRS	9	Unmodified	_TPKLDASRS_					0	0	0		ENST00000457671.1_1_1:161860623-161860854:+|nuORF	ENST00000457671.1_1_1:161860623-161860854:+|nuORF	ENST00000457671.1_1_1:161860623-161860854:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	487.3590087890625	2	487.766906	973.519259	-0.51906	-0.00025318	1.1792	0.00057519	0.66016	0.00032201	487.76875089093494	132.94	0.30452	133.1	132.94	133.25	0.16487					6	5	2	0	0	0	0.79191	1	52350	52350		6.7232	6.0328	1	800030			55132	12141	40120	40445	53812	53812					0.03143981920800343
TPKLFALRD	9	Unmodified	_TPKLFALRD_					0	0	0		nc|ENSG00000163521|Q6UWU2-2|GLB1L;ENSG00000163521|ENST00000295759|GLB1L	nc|ENSG00000163521|Q6UWU2-2|GLB1L	nc|ENSG00000163521|Q6UWU2-2|GLB1L	MULTI-MSMS	A375_MHC_IP_R1	1	1062.561279296875	1	1060.61496	1059.60768	-0.122	-0.0001294	3.481	0.0036921	3.359	0.0035627	1062.6223607959635	120.69	0.65582	120.69	120.3	120.96	0					26	12	3	0	0	0	0.69674	1	44807	44807		7.2892	0.56607	1	50911000			55133	6677	40121	40446	53813	53813					0.08026022231297247
TPKLFALRD	9	Unmodified	_TPKLFALRD_					0	0	0		nc|ENSG00000163521|Q6UWU2-2|GLB1L;ENSG00000163521|ENST00000295759|GLB1L	nc|ENSG00000163521|Q6UWU2-2|GLB1L	nc|ENSG00000163521|Q6UWU2-2|GLB1L	MULTI-MATCH	A375_MHC_IP_R2	2		1	1060.61496	1059.60768	0.10443	0.00011076	4.7383	0.0050256	4.8428	0.0051363	1060.621201918988	120.06	0.30486	120.6	120.4	120.7	0.5321	-0.045432	0.00083458	NaN	7.2892	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22129000			55134	6677	40121	40446							0.08026022231297247
TPKRRRLWR	9	Unmodified	_TPKRRRLWR_					0	0	0		ENST00000356840.7_1_6:16129383-16129569:+|nuORF	ENST00000356840.7_1_6:16129383-16129569:+|nuORF	ENST00000356840.7_1_6:16129383-16129569:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	423.9976501464844	3	423.59854	1267.77379	0.0062948	2.6665E-06	-1.7504	-0.00074147	-1.7441	-0.0007388	423.59750475620893	136.06	1.3321	136.17	135.58	136.92	0.11134					48	25	3	0	0	0	0.7686	1	53461	53461		0.86438	0.16671	1	11799000			55135	10972	40122	40447	53814	53814					0.150615132504754
TPKTKKKT	8	Unmodified	_TPKTKKKT_					0	0	0		nc|ENSG00000160199|P55347-2|PKNOX1;ENST00000607049.5_1_21:44448776-44450208:+|nuORF;ENSG00000160199|ENST00000291547|PKNOX1	nc|ENSG00000160199|P55347-2|PKNOX1	nc|ENSG00000160199|P55347-2|PKNOX1	MSMS	A375_MHC_IP_R1	1	466.1859436035156	2	466.300384	930.586216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.3	1	133.3	132.8	133.8	0								0	0	0	0.16876	1	51402	51402		2.3027	0	1				55136	14709	40123	40448	53815	53815					0.11814637202553513
TPLGVGTSRE	10	Unmodified	_TPLGVGTSRE_					0	0	0		nc|ENSG00000076554|P55327-3|TPD52	nc|ENSG00000076554|P55327-3|TPD52	nc|ENSG00000076554|P55327-3|TPD52	MULTI-MSMS	A375_MHC_IP_R2	2	508.6999816894531	2	508.772188	1015.52982	-1.0607	-0.00053967	0.26148	0.00013304	-0.79924	-0.00040663	508.77237228498205	61.382	1.0573	62.127	61.769	62.826	0.74503					44	20	3	0	0	0	0.60556	1	23155	23155		20.454	5.2051	1	9780400			55137	14482	40124	40449	53816	53816					0.022679645752418764
TPLHCVMEVD	10	Unmodified	_TPLHCVMEVD_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MSMS	A375_MHC_IP_R1	1	572.2622680664062	2	572.262284	1142.51002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.56	1	136.56	136.06	137.06	0								0	0	0	0.15308	1	52596	52596		10.824	0.75	1				55138	1120	40125	40450	53817	53817					-0.05553870751396062
TPLKMYPSM	9	Unmodified	_TPLKMYPSM_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1;ENST00000476994.1_1_17:17723326-17726886:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	MULTI-SECPEP	A375_MHC_IP_R1	1	356.94873046875	3	356.513651	1066.51912	-0.24929	-8.8877E-05	1.4007	0.00049937	1.1514	0.00041049	356.84871987038406	23.762	0.25341	23.762	23.687	23.94	0					6	4	2	0	0	0	0.76187	1	6665	6665		7.609	3.6646	1	559740			55139	1535	40126	40451	53818	53818					-0.011474773950567396
TPLLITQWL	9	Unmodified	_TPLLITQWL_					0	0	0			REV__ENST00000356260.9_1_4:76885294-76885342:-|nuORF	REV__ENST00000356260.9_1_4:76885294-76885342:-|nuORF	MSMS	A375_MHC_IP_R2	2	362.22705078125	3	362.21822	1083.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.718	1	60.465	59.965	60.965	0.74714								0	0	0	0.14729	1	22599	22599		26.021	7.2995	1		+		55140	23831	40127	40452	53819	53819					0.09436077033842594
TPLRTLAH	8	Unmodified	_TPLRTLAH_					0	0	0			REV__nc|ENSG00000155229|Q96T76-5|MMS19	REV__nc|ENSG00000155229|Q96T76-5|MMS19	MULTI-SECPEP	A375_MHC_IP_R2	2	908.26953125	1	908.531227	907.52395	-0.28504	-0.00025897	0.56116	0.00050983	0.27611	0.00025086	908.5319168505757	118.12	1.668	118.73	117.73	119.4	0.60909					40	32	2	0	0	0	0.96296	1	44505	44505		15.768	0	1	82261000	+		55141	19916	40128	40453	53820	53820					0.06648910854221413
TPLTATLSK	9	Unmodified	_TPLTATLSK_					0	0	0		nc|ENSG00000211895|P01876-1|IGHA1;nc|ENSG00000211895|P01876|IGHA1	nc|ENSG00000211895|P01876-1|IGHA1	nc|ENSG00000211895|P01876-1|IGHA1	MULTI-MSMS	A375_MHC_IP_R1	1	466.6765441894531	2	466.276575	930.538597	-0.39571	-0.00018451	0.28476	0.00013278	-0.11095	-5.1735E-05	466.276722618277	38.465	0.51128	38.465	38.218	38.73	0					14	9	2	0	0	0	0.0090499	1	13077	13077		100.09	46.258	1	4065600			55142	14889	40129	40454	53821	53821					0.07054938211729223
TPLTATLSK	9	Unmodified	_TPLTATLSK_					0	0	0		nc|ENSG00000211895|P01876-1|IGHA1;nc|ENSG00000211895|P01876|IGHA1	nc|ENSG00000211895|P01876-1|IGHA1	nc|ENSG00000211895|P01876-1|IGHA1	MULTI-SECPEP	A375_MHC_IP_R2	2	466.67626953125	2	466.276575	930.538597	-0.90888	-0.00042379	0.48605	0.00022664	-0.42283	-0.00019716	466.2767945005642	37.633	0.51191	38.407	38.124	38.636	0.77451					15	9	2	0	0	0	0.076731	1	13794	13794		80.676	26.843	1	4663500			55143	14889	40129	40454	53822	53822					0.07054938211729223
TPLVMHFCDC	10	Unmodified	_TPLVMHFCDC_					0	0	0			REV__ENSG00000185567|ENST00000333244|AHNAK2	REV__ENSG00000185567|ENST00000333244|AHNAK2	MSMS	A375_MHC_IP_R2	2	389.13970947265625	3	389.166146	1164.47661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.776	1	61.522	61.022	62.022	0.74503								0	0	0	0.15531	1	23019	23019		1.7423	0.14999	1		+		55144	21900	40130	40455	53823	53823					-0.09905195794931387
TPMAAPLEIEI	11	Unmodified	_TPMAAPLEIEI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;TTN|p.L14011*|1|0.26|ENSG00000155657|chr2:178618595-178618595|A/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R1	1	395.9454650878906	3	395.545897	1183.61586	-0.08935	-3.5342E-05	-0.19126	-7.5653E-05	-0.28061	-0.00011099	395.5454012075563	68.719	0.65897	68.719	68.31	68.969	0					36	12	4	0	0	0	0.73078	1	24872	24872		4.1166	0.27072	1	3390900			55145	6151	40131	40456	53824	53824					0.03139788365729146
TPMGKEEWRPE	11	Unmodified	_TPMGKEEWRPE_					0	0	0			REV__ZNF646|p.Y1540Sfs*8|1|0.42|ENSG00000167395|chr16:31080943-31080943|A/-|frameshift_variant	REV__ZNF646|p.Y1540Sfs*8|1|0.42|ENSG00000167395|chr16:31080943-31080943|A/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	680.21826171875	2	680.321719	1358.62889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.529	1	84.529	84.029	85.029	0								0	0	0	0.16191	1	30963	30963		8.7454	0	1		+		55146	20756	40132	40457	53825	53825					-0.036083805221778675
TPMQGGWLRD	10	Unmodified	_TPMQGGWLRD_					0	0	0			REV__ENSG00000172410|ENST00000304526|INSL5	REV__ENSG00000172410|ENST00000304526|INSL5	MSMS	A375_MHC_IP_R1	1	387.4452209472656	3	387.522086	1159.54443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.441	1	41.441	40.941	41.941	0								0	0	0	0.15451	1	14304	14304		5.7834	3.1522	1		+		55147	21142	40133	40458	53826	53826					-0.02896286548275384
TPNFTHLL	8	Unmodified	_TPNFTHLL_					0	0	0		ENSG00000126856.15,PRDM7,chr16,-,I10.1,90062503,90063611|74|6.73|1|intron;ENSG00000126856.15,PRDM7,chr16,-,I10.1,90062503,90063611|74|6.73|4|intron;ENSG00000126856.15,PRDM7,chr16,-,I10.1,90062503,90063611|74|6.73|3|intron;ENSG00000126856.15,PRDM7,chr16,-,I10.1,90062503,90063611|74|6.73|2|intron	ENSG00000126856.15,PRDM7,chr16,-,I10.1,90062503,90063611|74|6.73|1|intron	ENSG00000126856.15,PRDM7,chr16,-,I10.1,90062503,90063611|74|6.73|1|intron	MULTI-SECPEP	A375_MHC_IP_R2	2	471.9809265136719	2	471.75581	941.497067	-0.65827	-0.00031054	-0.32325	-0.0001525	-0.98153	-0.00046304	471.75589192226806	45.157	0.35503	45.922	45.846	46.201	0.76519					8	6	2	0	0	0	0.97144	1	16967	16967		5.2307	0	1	1500900			55148	4064	40134	40459	53827	53827					0.023978022430469537
TPNGSRSYEF	10	Unmodified	_TPNGSRSYEF_					0	0	0			REV__nc|ENSG00000116761|P32929-2|CTH	REV__nc|ENSG00000116761|P32929-2|CTH	MULTI-SECPEP	A375_MHC_IP_R1	1	578.7037963867188	2	579.264727	1156.5149	-0.068879	-3.9899E-05	1.2389	0.00071766	1.17	0.00067777	579.26544379959	53.775	0.508	53.775	53.505	54.013	0					20	9	3	0	0	0	0.93615	1	19187	19187		1.6526	0	1	2834400	+		55149	17971	40135	40460	53828	53828					-0.05709527292765415
TPNSDQMY	8	Unmodified	_TPNSDQMY_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MSMS	A375_MHC_IP_R1	1	478.1114807128906	2	478.194925	954.375297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.55	1	37.55	37.05	38.05	0								0	0	0	0.16876	1	12667	12667		18.135	1.1927	1		+		55150	18931	40136	40461	53829	53829					-0.103716079016408
TPNSDQMY	8	Unmodified	_TPNSDQMY_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MSMS	A375_MHC_IP_R2	2	478.1113586425781	2	478.194925	954.375297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.88	1	37.651	37.151	38.151	0.7709								0	0	0	0.16876	1	13468	13468		18.135	1.9859	1		+		55151	18931	40136	40461	53830	53830					-0.103716079016408
TPPLCDKWD	9	Unmodified	_TPPLCDKWD_					0	0	0			REV__ENSG00000112685|ENST00000230449|EXOC2	REV__ENSG00000112685|ENST00000230449|EXOC2	MSMS	A375_MHC_IP_R2	2	537.4794921875	2	537.749867	1073.48518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.12365	1	0.59409	0.094094	1.0941	0.47044								0	0	0	0.15486	1	44	44		1.4819	0.15237	1		+		55152	17747	40137	40462	53831	53831					-0.04862182562465023
TPPLGHCS	8	Unmodified	_TPPLGHCS_					0	0	0			REV__ENST00000470088.5_1_11:64559674-64564762:-|nuORF	REV__ENST00000470088.5_1_11:64559674-64564762:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	406.1395568847656	2	406.191988	810.369423	-0.025672	-1.0428E-05	0.84735	0.00034419	0.82168	0.00033376	406.1922886797197	74.429	0.5099	75.167	75.009	75.519	0.73752					14	9	2	0	0	0	0.94479	1	28324	28324		13.508	8.2772	1	1369200	+		55153	25100	40138	40463	53832	53832					-0.04334661622647218
TPPPLLLY	8	Unmodified	_TPPPLLLY_					0	0	0			REV__ENSG00000050344|ENST00000056233|NFE2L3	REV__ENSG00000050344|ENST00000056233|NFE2L3	MULTI-MSMS	A375_MHC_IP_R2	2	457.17181396484375	2	457.273304	912.532055	-0.34169	-0.00015625	0.86313	0.00039468	0.52143	0.00023844	457.2736866770286	128.91	0.40396	129.14	128.86	129.26	0.23946					10	7	2	0	0	0	0.7779	1	50665	50665		2.5775	0	1	2998700	+		55154	16385	40139	40464	53833	53833					0.07229045051008143
TPPPPPPPP	9	Unmodified	_TPPPPPPPP_					0	0	0		ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENST00000361875.7_1_3:150126647-150126773:+|nuORF;ENST00000360982.2_1_2:183902874-183903513:-|nuORF;ENSG00000152409|ENST00000396137|JMY;ENSG00000170807|ENST00000458573|LMOD2;nc|ENSG00000185596|C4AMC7|WASH3P;ENST00000557932.5_1_15:102513813-102516466:+|nuORF;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1;ENST00000400706.3_1_12:88275-90926:+|nuORF;nc|ENSG00000292372|Q9NQA3|WASH6P;nc|ENSG00000234769|A8MWX3|WASH4P;ENSG00000182484|ENST00000359512|WASH6P;nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16;ENSG00000151612|ENST00000508784|ZNF827;nc|ENSG00000151612|Q17R98-2|ZNF827;nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4;ENSG00000166924|ENST00000300179|NYAP1;nc|ENSG00000166924|Q6ZVC0-2|NYAP1;ENST00000251366.7_1_16:68266662-68269948:-|nuORF;ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENSG00000203485|ENST00000392634|INF2;nc|ENSG00000203485|Q27J81-2|INF2	ENSG00000131504|ENST00000389054|DIAPH1;REV__ENSG00000186648|ENST00000342740|CARMIL3;ENSG00000170807|ENST00000458573|LMOD2;REV__ENSG00000173166|ENST00000319170|RAPH1;nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000151612|ENST00000508784|ZNF827;REV__nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000091656|Q86UP3|ZFHX4;REV__RBM33|p.E1103Gfs*12|1|0.21|ENSG00000184863|chr7:155766588-155766588|A/-|frameshift_variant;REV__nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000166924|ENST00000300179|NYAP1;ENST00000251366.7_1_16:68266662-68269948:-|nuORF;ENSG00000203485|ENST00000392634|INF2;REV__ENST00000584214.1_1_17:16253243-16256750:-|nuORF	REV__nc|ENSG00000171634|Q12830-4|BPTF	MULTI-SECPEP	A375_MHC_IP_R1	1	449.0096130371094	2	448.747453	895.480354	-0.10237	-4.5939E-05	0.17297	7.7618E-05	0.070594	3.1679E-05	448.7475158304528	38.961	1.9854	38.961	37.505	39.491	0					63	38	2	0	0	0	0.14105	1	13038	13038		42.095	0	1	2416700			55155	21084;21198;4337;14812;1169;5915;27230;21980;7542;1985;21842;7133;2419;9388;20688	40140	40465	53834	53834					0.028433013570861476
TPPSLAGHPLY	11	Unmodified	_TPPSLAGHPLY_					0	0	0		nc|ENSG00000165655|Q96F45-2|ZNF503;ENSG00000165655|ENST00000372524|ZNF503	nc|ENSG00000165655|Q96F45-2|ZNF503	nc|ENSG00000165655|Q96F45-2|ZNF503	MSMS	A375_MHC_IP_R2	2	576.7047119140625	2	576.806031	1151.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.45	1	131.64	131.14	132.14	0.18953								0	0	0	0.15902	1	51707	51707		14.838	1.2234	1				55156	6974	40141	40466	53835	53835					0.027774145060675437
TPQQIQLNP	9	Unmodified	_TPQQIQLNP_					0	0	0		ENSG00000130699|ENST00000252996|TAF4;ENST00000436129.2_1_20:60551226-60583162:-|nuORF	ENSG00000130699|ENST00000252996|TAF4	ENSG00000130699|ENST00000252996|TAF4	MULTI-SECPEP	A375_MHC_IP_R1	1	519.9351196289062	2	519.782556	1037.55056	-0.34874	-0.00018127	-0.098877	-5.1395E-05	-0.44762	-0.00023266	519.7823856887891	20.87	0.51194	20.87	20.536	21.048	0					15	9	2	0	0	0	0.80516	1	5307	5307		1.6526	0	1	2386900			55157	4262	40142	40467	53836	53836					0.033285549548736526
TPQRHVLTY	9	Unmodified	_TPQRHVLTY_					0	0	0		ENST00000526424.5_1_11:46969642-47125317:+|nuORF	ENST00000526424.5_1_11:46969642-47125317:+|nuORF	ENST00000526424.5_1_11:46969642-47125317:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	557.1845092773438	2	557.803823	1113.59309	-0.6744	-0.00037618	0.51847	0.0002892	-0.15593	-8.698E-05	557.804190043262	46.825	0.71729	46.825	46.545	47.263	0					17	13	2	0	0	0	0.71541	1	16515	16515		16.942	9.6531	1	2175700			55158	13083	40143	40468	53837	53837					0.04083950083122545
TPQRHVLTY	9	Unmodified	_TPQRHVLTY_					0	0	0		ENST00000526424.5_1_11:46969642-47125317:+|nuORF	ENST00000526424.5_1_11:46969642-47125317:+|nuORF	ENST00000526424.5_1_11:46969642-47125317:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	557.803823	1113.59309	-0.70505	-0.00039328	0.26959	0.00015038	-0.43546	-0.0002429	557.8037328583868	45.909	0.35295	46.674	46.503	46.855	0.76518	-0.075204	-0.0001336	NaN	16.942	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1730800			55159	13083	40143	40468							0.04083950083122545
TPQRKVFRS	9	Unmodified	_TPQRKVFRS_					0	0	0		ENSG00000140943|ENST00000343411|MBTPS1	ENSG00000140943|ENST00000343411|MBTPS1	ENSG00000140943|ENST00000343411|MBTPS1	MULTI-SECPEP	A375_MHC_IP_R2	2	373.3714904785156	3	373.552485	1117.63563	-0.067098	-2.5064E-05	4.0973	0.0015306	4.0302	0.0015055	373.8888346230089	25.712	0.30492	26.372	26.144	26.449	0.65992					8	5	2	0	0	0	0.67483	1	8537	8537		14.405	12.663	1	1694500			55160	5194	40144	40469	53838	53838					0.08151345211376793
TPQSLIALAK	10	Unmodified	_TPQSLIALAK_					0	0	0			REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	520.6981201171875	2	521.318774	1040.623	-0.66184	-0.00034503	1.5025	0.00078326	0.84063	0.00043824	521.3187910995993	39.999	0.30603	39.999	39.794	40.1	0					11	5	3	0	0	0	0.92227	1	13735	13735		5.2969	1.3525	1	1218100	+		55161	19998	40145	40470	53839	53839					0.10430889028452839
TPQYRYLYG	9	Unmodified	_TPQYRYLYG_					0	0	0			REV__ENSG00000106392|ENST00000436587|C1GALT1	REV__ENSG00000106392|ENST00000436587|C1GALT1	MULTI-SECPEP	A375_MHC_IP_R1	1	388.27703857421875	3	387.529346	1159.56621	0.32852	0.00012731	0.22994	8.9108E-05	0.55846	0.00021642	387.52930193272795	51.979	0.56078	51.979	51.676	52.237	0					14	10	2	0	0	0	0.79713	1	18382	18382		3.8763	3.8763	1	1547300	+		55162	17445	40146	40471	53840	53840					-0.0071915852806796465
TPQYRYLYG	9	Unmodified	_TPQYRYLYG_					0	0	0			REV__ENSG00000106392|ENST00000436587|C1GALT1	REV__ENSG00000106392|ENST00000436587|C1GALT1	MULTI-MATCH	A375_MHC_IP_R2	2		3	387.529346	1159.56621	-0.28778	-0.00011152	-0.018517	-7.1757E-06	-0.30629	-0.0001187	387.52934706730935	51.166	0.30538	51.919	51.814	52.119	0.75304	-0.030178	-0.00015269	NaN	3.8763	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	788850	+		55163	17445	40146	40471							-0.0071915852806796465
TPRARGHG	8	Unmodified	_TPRARGHG_					0	0	0			REV__ENST00000591991.1_1_19:5667365-5667434:+|nuORF	REV__ENST00000591991.1_1_19:5667365-5667434:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	851.8599243164062	1	851.459459	850.452182	-0.67728	-0.00057668	1.575	0.0013411	0.89774	0.00076439	851.4608682891449	143.53	0.23782	143.53	143.45	143.68	0					6	4	2	0	0	0	0.77861	1	55081	55081		0	0	1	842900	+		55164	26449	40147	40472	53841	53841					0.020974162203856395
TPRARGHG	8	Unmodified	_TPRARGHG_					0	0	0			REV__ENST00000591991.1_1_19:5667365-5667434:+|nuORF	REV__ENST00000591991.1_1_19:5667365-5667434:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	851.459459	850.452182	-0.67728	-0.00057668	1.575	0.0013411	0.89774	0.00076439	851.4608682891449	143.53	0.23782	143.53	143.45	143.68	0	-0.039687	9.556E-05	NaN	0	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	842900	+		55165	26449	40147	40472							0.020974162203856395
TPRARGHG	8	Unmodified	_TPRARGHG_					0	0	0			REV__ENST00000591991.1_1_19:5667365-5667434:+|nuORF	REV__ENST00000591991.1_1_19:5667365-5667434:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	851.459459	850.452182	-0.47701	-0.00040615	1.4216	0.0012104	0.94458	0.00080427	851.46054280754	143.59	0.14728	143.61	143.49	143.64	0.024414	0.039687	-3.5091E-05	NaN	0	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	870770	+		55166	26449	40147	40472							0.020974162203856395
TPRDNVAV	8	Unmodified	_TPRDNVAV_					0	0	0			REV__ENSG00000145934|ENST00000518659|TENM2	REV__ENSG00000145934|ENST00000518659|TENM2	MULTI-MSMS	A375_MHC_IP_R1	1	436.63470458984375	2	436.235242	870.45593	-0.13317	-5.8093E-05	-0.57949	-0.00025279	-0.71266	-0.00031089	436.234910157724	87.975	0.45813	87.975	87.747	88.205	0					13	8	2	0	0	0	0.77123	1	32317	32317		14.582	0	1	1931700	+		55167	19505	40148	40473	53842	53842					0.015520412035698428
TPRKAGSTPV	10	Unmodified	_TPRKAGSTPV_					0	0	0			REV__nc|ENSG00000163626|Q8N8Q8-2|COX18	REV__nc|ENSG00000163626|Q8N8Q8-2|COX18	MULTI-MSMS	A375_MHC_IP_R1	1	508.19439697265625	2	507.290548	1012.56654	-0.69674	-0.00035345	0.95396	0.00048393	0.25722	0.00013048	507.2905748719476	41.651	0.86646	41.651	41.266	42.132	0					52	16	4	0	0	0	0.50967	1	14474	14474		27.629	6.0918	1	60181000	+		55168	20387	40149	40474	53843	53843					0.06076261191810772
TPRLCKWERP	10	Unmodified	_TPRLCKWERP_					0	0	0		ENST00000380752.9_1_13:30087221-30087377:-|nuORF	ENST00000380752.9_1_13:30087221-30087377:-|nuORF	ENST00000380752.9_1_13:30087221-30087377:-|nuORF	MSMS	A375_MHC_IP_R2	2	429.2665710449219	3	429.232647	1284.67611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.125	1	38.899	38.399	39.399	0.77451								0	0	0	0.15411	1	14005	14005		7.4771	0	1				55169	11359	40150	40475	53844	53844					0.045159435394452885
TPRLSYQVK	9	Unmodified	_TPRLSYQVK_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-MSMS	A375_MHC_IP_R1	1	546.7138061523438	2	546.314023	1090.61349	-0.30916	-0.0001689	-0.8379	-0.00045776	-1.1471	-0.00062665	546.3136563491553	42.866	0.55904	42.866	42.638	43.197	0					14	10	2	0	0	0	0.57432	1	14910	14910		16.149	3.9084	1	1912600			55170	9666	40151	40476	53845	53845					0.07181120742939129
TPRTEFPETW	10	Unmodified	_TPRTEFPETW_					0	0	0		TET3|p.A436T|1|0.33|ENSG00000187605|chr2:74047223-74047223|G/A|missense_variant	TET3|p.A436T|1|0.33|ENSG00000187605|chr2:74047223-74047223|G/A|missense_variant	TET3|p.A436T|1|0.33|ENSG00000187605|chr2:74047223-74047223|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	422.27166748046875	3	421.87166	1262.59315	0.074419	3.1395E-05	-0.14565	-6.1447E-05	-0.071234	-3.0052E-05	421.8715718608436	20.278	0.45527	20.278	20.03	20.485	0					14	8	2	0	0	0	0.93041	1	5182	5182		5.0475	0.64137	1	3291700			55171	29328	40152	40477	53846	53846					-0.02764094707526965
TPRVKKSGRF	10	Unmodified	_TPRVKKSGRF_					0	0	0			REV__SEMA4C|p.L552F|1|0.18|ENSG00000168758|chr2:96861597-96861597|G/A|missense_variant	REV__SEMA4C|p.L552F|1|0.18|ENSG00000168758|chr2:96861597-96861597|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	392.9325256347656	3	392.571768	1174.69348	-0.6433	-0.00025254	0.43617	0.00017123	-0.20713	-8.1312E-05	392.57195241881595	25.658	0.55791	26.318	26.044	26.602	0.65992					24	10	3	0	0	0	0.71455	1	8546	8546		5.7834	0	1	5388900	+		55172	27940	40153	40478	53847	53847					0.11311607136781276
TPSAPTLWAL	10	Unmodified	_TPSAPTLWAL_					0	0	0		ENST00000541990.5_1_1:155170782-155174851:-|nuORF;ENST00000486260.5_1_1:155170782-155176189:-|nuORF	ENST00000541990.5_1_1:155170782-155174851:-|nuORF	ENST00000541990.5_1_1:155170782-155174851:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	529.2059326171875	2	528.78985	1055.56515	-0.52201	-0.00027604	-0.074343	-3.9312E-05	-0.59636	-0.00031535	528.7899594047022	53.53	0.45698	53.53	53.301	53.758	0					13	8	3	0	0	0	0.78945	1	19176	19176		25.399	8.457	1	2591700			55173	13293	40154	40479	53848	53848					0.03958627103043
TPSCCGSHC	9	Unmodified	_TPSCCGSHC_					0	0	0			REV__ENST00000239761.3_10:18098447-18112068:+|nuORF	REV__ENST00000239761.3_10:18098447-18112068:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	893.9656982421875	1	894.290269	893.282993	0.063264	5.6576E-05	-2.1598	-0.0019315	-2.0965	-0.0018749	894.2853707339546	126.33	0.25246	126.33	126.1	126.36	0					5	4	2	0	0	0	0.80005	1	48225	48225		0.52476	0	1	4812700	+		55174	23093	40155	40480	53849	53849					-0.1679173251117163
TPSLQKTGVYT	11	Unmodified	_TPSLQKTGVYT_					0	0	0			REV__nc|ENSG00000130204|O96008-2|TOMM40	REV__nc|ENSG00000130204|O96008-2|TOMM40	MULTI-SECPEP	A375_MHC_IP_R2	2	597.1788330078125	2	597.821878	1193.6292	-0.56574	-0.00033821	-1.4679	-0.00087754	-2.0336	-0.0012158	597.8225237055159	107.98	0.25643	108.74	108.56	108.81	0.75436					5	4	2	0	0	0	0.98524	1	40810	40810		7.1017	0	1	684870	+		55175	18526	40156	40481	53850	53850					0.040133624693453385
TPSLSRPTL	9	Unmodified	_TPSLSRPTL_					0	0	0			REV__nc|ENSG00000069020|O15021-6|MAST4	REV__nc|ENSG00000069020|O15021-6|MAST4	MULTI-SECPEP	A375_MHC_IP_R1	1	486.6796875	2	486.279649	970.544745	-0.15245	-7.4135E-05	0.019306	9.3882E-06	-0.13315	-6.4747E-05	486.27971434594866	54.547	0.55836	54.547	54.263	54.822	0					21	10	3	0	0	0	0.070665	1	19473	19473		69.105	25.333	1	3728700	+		55176	27113	40157	40482	53851	53851					0.05829456443234449
TPTDLTNTL	9	Unmodified	_TPTDLTNTL_					0	0	0			REV__ENSG00000119471|ENST00000398805|HSDL2	REV__ENSG00000119471|ENST00000398805|HSDL2	MULTI-SECPEP	A375_MHC_IP_R1	1	487.7132263183594	2	488.253297	974.492041	-0.28174	-0.00013756	-3.667	-0.0017904	-3.9488	-0.001928	488.25130199913445	87.773	0.2039	87.773	87.644	87.848	0					5	3	2	0	0	0	0.3243	1	32224	32224		28.487	0	1	493550	+		55177	18073	40158	40483	53852	53852					0.0037745358977190335
TPTKVSPPVVP	11	Unmodified	_TPTKVSPPVVP_					0	0	0			REV__ENST00000486701.1_1_2:27663393-27664286:+|nuORF	REV__ENST00000486701.1_1_2:27663393-27664286:+|nuORF	MSMS	A375_MHC_IP_R2	2	374.60101318359375	3	374.557013	1120.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.459	1	26.103	25.603	26.603	0.64368								0	0	0	0.16138	1	8510	8510		11.518	0.4526	1		+		55178	17862	40159	40484	53853	53853					0.09371158199951424
TPTNETSTF	9	Unmodified	_TPTNETSTF_					0	0	0			REV__nc|ENSG00000169894|Q02505-5|MUC3A	REV__nc|ENSG00000169894|Q02505-5|MUC3A	MULTI-MSMS	A375_MHC_IP_R2	2	499.1790466308594	2	499.227279	996.440005	-0.71234	-0.00035562	-0.12887	-6.4333E-05	-0.84121	-0.00041995	499.2272409134385	65.634	0.61035	66.372	66.018	66.629	0.73811					25	11	3	0	0	0	0.55818	1	24790	24790		16.942	4.4107	1	2514400	+		55179	20950	40160	40485	53854	53854					-0.058357098240094274
TPTNVKFSL	9	Unmodified	_TPTNVKFSL_					0	0	0		ENSG00000166268|ENST00000552032|MYRFL	ENSG00000166268|ENST00000552032|MYRFL	ENSG00000166268|ENST00000552032|MYRFL	MULTI-SECPEP	A375_MHC_IP_R1	1	503.1864929199219	2	503.782025	1005.5495	0.082874	4.1751E-05	-0.23639	-0.00011909	-0.15352	-7.7341E-05	503.78208418016743	127.14	0.15305	127.14	127.01	127.16	0					4	2	2	0	0	0	0.47368	1	48616	48616		20.454	0	1	2448400			55180	7054	40161	40486	53855	53855					0.04694340586001999
TPTRARPP	8	Unmodified	_TPTRARPP_					0	0	0			REV__ENST00000295522.3_1_3:190039874-190040219:-|nuORF	REV__ENST00000295522.3_1_3:190039874-190040219:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	894.8577270507812	1	895.510826	894.503549	0.19712	0.00017652	-0.21739	-0.00019467	-0.020271	-1.8153E-05	895.5108682479328	126.68	0.45576	126.68	126.46	126.91	0					12	8	3	0	0	0	0.97144	1	48419	48419		9.3474	0	1	9622200	+		55181	23381	40162	40487	53856	53856					0.05207740194418875
TPTRLHKRL	9	Unmodified	_TPTRLHKRL_					0	0	0			REV__ENSG00000188629|ENST00000683217|ZNF177	REV__ENSG00000188629|ENST00000683217|ZNF177	MULTI-MSMS	A375_MHC_IP_R1	1	374.90850830078125	3	374.568247	1120.68291	0.029775	1.1153E-05	0.022121	8.286E-06	0.051897	1.9439E-05	374.56825261417146	23.559	0.61029	23.559	23.33	23.94	0					19	11	2	0	0	0	0.67332	1	6603	6603		6.1918	2.0023	1	22831000	+		55182	22102	40163	40488	53857	53857					0.12739624482355794
TPTRLHKRL	9	Unmodified	_TPTRLHKRL_					0	0	0			REV__ENSG00000188629|ENST00000683217|ZNF177	REV__ENSG00000188629|ENST00000683217|ZNF177	MULTI-MSMS	A375_MHC_IP_R2	2	374.968017578125	3	374.568247	1120.68291	-0.012235	-4.5828E-06	-0.18892	-7.0762E-05	-0.20115	-7.5344E-05	374.56818028190054	22.542	0.61267	23.172	22.704	23.317	0.63014					20	11	3	0	0	0	0.44024	1	7167	7167		21.59	3.727	1	1631400	+		55183	22102	40163	40488	53858	53858					0.12739624482355794
TPTSARGT	8	Unmodified	_TPTSARGT_					0	0	0		ENST00000604516.1_1_6:79944248-79944593:+|nuORF	ENST00000604516.1_1_6:79944248-79944593:+|nuORF	ENST00000604516.1_1_6:79944248-79944593:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	790.8047485351562	1	790.405357	789.398081	-0.78565	-0.00062098	0.62066	0.00049057	-0.16499	-0.00013041	790.4056223217086	146.93	0.11105	146.95	146.88	147	0.019913					28	12	3	0	0	0	0.77842	1	57191	57191		0.69038	0	1	469270			55184	13903	40164	40489	53859	53859					-0.005042207218480144
TPTSKKKTL	9	Unmodified	_TPTSKKKTL_					0	0	0		nc|ENSG00000204113|Q5H9B9|BMP2KL	nc|ENSG00000204113|Q5H9B9|BMP2KL	nc|ENSG00000204113|Q5H9B9|BMP2KL	MULTI-SECPEP	A375_MHC_IP_R1	1	501.9035339355469	2	502.310949	1002.60735	-0.5216	-0.00026201	0.67253	0.00033782	0.15093	7.5814E-05	502.31102775196786	90.193	0.45592	90.193	89.931	90.387	0					15	8	3	0	0	0	0.65246	1	33096	33096		10.824	10.824	1	1372800			55185	14856	40165	40490	53860	53860					0.10614602511429894
TPTSKKKTL	9	Unmodified	_TPTSKKKTL_					0	0	0		nc|ENSG00000204113|Q5H9B9|BMP2KL	nc|ENSG00000204113|Q5H9B9|BMP2KL	nc|ENSG00000204113|Q5H9B9|BMP2KL	MULTI-MATCH	A375_MHC_IP_R2	2		2	502.310949	1002.60735	-0.54245	-0.00027248	-0.20444	-0.00010269	-0.74689	-0.00037517	502.3108768843226	89.248	0.34941	89.98	89.735	90.085	0.7318	-0.10625	-0.00027083	NaN	10.824	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1234400			55186	14856	40165	40490							0.10614602511429894
TPVCDRKDF	9	Unmodified	_TPVCDRKDF_					0	0	0		ENSG00000137273|ENST00000645481|FOXF2	ENSG00000137273|ENST00000645481|FOXF2	ENSG00000137273|ENST00000645481|FOXF2	MULTI-MSMS	A375_MHC_IP_R2	2	540.6607666015625	2	540.760766	1079.50698	-0.86994	-0.00047043	0.44046	0.00023818	-0.42948	-0.00023225	541.2618461113033	41.704	0.35865	42.479	42.3	42.659	0.77451					14	6	3	0	0	0	0.64136	1	15527	15527		12.241	0	1	2432300			55187	4874	40166	40491	53861	53861					-0.029593778138860216
TPVCTHCQC	9	Unmodified	_TPVCTHCQC_					0	0	0		ENST00000541704.2_1_12:109549217-109563236:+|nuORF	ENST00000541704.2_1_12:109549217-109563236:+|nuORF	ENST00000541704.2_1_12:109549217-109563236:+|nuORF	MSMS	A375_MHC_IP_R1	1	496.18438720703125	2	496.193348	990.372142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.361	1	73.361	72.861	73.861	0								0	0	0	0.15486	1	26710	26710		12.532	2.3482	1				55188	13291	40167	40492	53862	53862					-0.12342897551661736
TPVDKLPQL	9	Unmodified	_TPVDKLPQL_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-SECPEP	A375_MHC_IP_R2	2	506.1973571777344	2	505.797675	1009.5808	-0.85844	-0.0004342	-2.388	-0.0012078	-3.2464	-0.001642	505.7977551859909	65.662	1.372	66.4	65.308	66.68	0.73811					34	26	2	0	0	0	0.23894	1	24886	24886		55.503	29.235	1	4107500			55189	4937	40168	40493	53863	53863					0.07638913620110088
TPVDKLPQL	9	Unmodified	_TPVDKLPQL_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MATCH	A375_MHC_IP_R1	1		2	505.797675	1009.5808	-0.56944	-0.00028802	-3.2441	-0.0016409	-3.8136	-0.0019289	506.29615545965885	66.532	1.7827	66.532	65.411	67.194	0	0.066031	-0.00027252	NaN	55.503	45	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2489000			55190	4937	40168	40493							0.07638913620110088
TPVDVIKAME	10	Unmodified	_TPVDVIKAME_					0	0	0			REV__nc|ENSG00000155893|Q8TE99-2|PXYLP1	REV__nc|ENSG00000155893|Q8TE99-2|PXYLP1	MULTI-SECPEP	A375_MHC_IP_R2	2	367.6216735839844	3	368.198609	1101.574	-0.24406	-8.9862E-05	-1.8801	-0.00069226	-2.1242	-0.00078212	368.19773633743415	25.577	0.50819	26.236	25.941	26.449	0.65992					16	9	2	0	0	0	0.87163	1	8558	8558		12.175	5.1377	1	3117700	+		55191	19946	40169	40494	53864	53864					0.02727232677216307
TPVFPTMDTW	10	Unmodified	_TPVFPTMDTW_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.K10017Ifs*3|1|0.07|ENSG00000181143|chr19:8946720-8946721|-/A|frameshift_variant;MUC16|p.L10196Yfs*32|1|0.2|ENSG00000181143|chr19:8946183-8946183|A/-|frameshift_variant;MUC16|p.N7637Ifs*2|1|0.95|ENSG00000181143|chr19:8953860-8953860|T/-|frameshift_variant;MUC16|p.Q4739Sfs*3|1|0.33|ENSG00000181143|chr19:8962555-8962556|-/A|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	A375_MHC_IP_R2	2	398.30322265625	3	398.854842	1193.5427	-0.37104	-0.00014799	3.4395	0.0013718	3.0684	0.0012239	399.1901892208209	23.424	0.20083	24.054	23.928	24.129	0.63014					5	3	2	0	0	0	0.93799	1	7529	7529		1.7423	1.1154	1	1103900			55192	8335	40170	40495	53865	53865					-0.04633340356872395
TPVHELWLPQG	11	Unmodified	_TPVHELWLPQG_					0	0	0			REV__ENSG00000162415|ENST00000359600|ZSWIM5	REV__ENSG00000162415|ENST00000359600|ZSWIM5	MULTI-SECPEP	A375_MHC_IP_R1	1	426.6190490722656	3	426.227667	1275.66117	-0.2029	-8.6484E-05	-0.47836	-0.00020389	-0.68126	-0.00029037	426.5620513970762	32.076	0.30875	32.076	31.973	32.282	0					6	5	2	0	0	0	0.9907	1	10308	10308		9.2438	0	1	466820	+		55193	20251	40171	40496	53866	53866					0.03436774943133969
TPVIIAIQTFC	11	Unmodified	_TPVIIAIQTFC_					0	0	0		ENSG00000175782|ENST00000398004|SLC35E3	ENSG00000175782|ENST00000398004|SLC35E3	ENSG00000175782|ENST00000398004|SLC35E3	MULTI-SECPEP	A375_MHC_IP_R2	2	403.2756042480469	3	402.558137	1204.65258	-0.31774	-0.00012791	2.5303	0.0010186	2.2125	0.00089068	402.8944071414567	20.238	0.71089	20.848	20.499	21.21	0.61029					39	13	4	0	0	0	0.98535	1	6238	6238		9.2438	7.5015	1	8885600			55194	7982	40172	40497	53867	53867					0.05844084982277309
TPVIIPASQY	10	Unmodified	_TPVIIPASQY_					0	0	0			REV__nc|ENSG00000075151|O43432-2|EIF4G3	REV__nc|ENSG00000075151|O43432-2|EIF4G3	MULTI-SECPEP	A375_MHC_IP_R1	1	363.9374694824219	3	363.53773	1087.59136	-0.11616	-4.223E-05	-0.2163	-7.8634E-05	-0.33247	-0.00012086	363.5375449960494	26.074	0.81041	26.074	25.866	26.677	0					44	15	4	0	0	0	0.74754	1	7700	7700		19.626	0	1	63726000	+		55195	16650	40173	40498	53868	53868					0.05106896274514838
TPVIIPASQY	10	Unmodified	_TPVIIPASQY_					0	0	0			REV__nc|ENSG00000075151|O43432-2|EIF4G3	REV__nc|ENSG00000075151|O43432-2|EIF4G3	MULTI-MSMS	A375_MHC_IP_R2	2	364.27197265625	3	363.53773	1087.59136	-0.5137	-0.00018675	0.04984	1.8119E-05	-0.46386	-0.00016863	363.53768764715284	25.459	0.71304	26.103	25.822	26.535	0.64368					35	13	3	0	0	0	0.27246	3	8489	8481;8489;8550		32.037	16.299	1	70749000	+		55196	16650	40173	40498	53869;53870;53871	53870					0.05106896274514838
TPVIIPASQY	10	Unmodified	_TPVIIPASQY_					0	0	0			REV__nc|ENSG00000075151|O43432-2|EIF4G3	REV__nc|ENSG00000075151|O43432-2|EIF4G3	MULTI-SECPEP	A375_MHC_IP_R2	2	364.27197265625	3	363.53773	1087.59136	-0.5137	-0.00018675	0.04984	1.8119E-05	-0.46386	-0.00016863	363.53768764715284	25.459	0.71304	26.103	25.822	26.535	0.64368					35	13	3	0	0	0	0.56504	1	8489	8489		29.437	8.8562	1	70749000	+		55197	16650	40173	40498	53872	53872					0.05106896274514838
TPVINEDWI	9	Unmodified	_TPVINEDWI_					0	0	0			REV__ENSG00000021776|ENST00000156471|AQR	REV__ENSG00000021776|ENST00000156471|AQR	MULTI-SECPEP	A375_MHC_IP_R1	1	543.1510009765625	2	543.776939	1085.53933	-0.69918	-0.0003802	0.20772	0.00011295	-0.49146	-0.00026725	543.7770396626285	65.578	0.71474	65.578	65.257	65.972	0					29	13	3	0	0	0	0.58271	1	23660	23660		14.838	0	1	5116300	+		55198	16269	40174	40499	53873	53873					-2.2671392343909247E-05
TPVLFHNKQE	10	Unmodified	_TPVLFHNKQE_					0	0	0		nc|ENSG00000164221|Q8NEF3|CCDC112;ENSG00000164221|ENST00000379611|CCDC112	nc|ENSG00000164221|Q8NEF3|CCDC112	nc|ENSG00000164221|Q8NEF3|CCDC112	MULTI-SECPEP	A375_MHC_IP_R2	2	404.2953796386719	3	404.8839	1211.62987	-0.33077	-0.00013392	-0.071699	-2.903E-05	-0.40246	-0.00016295	404.8838752610097	23.004	0.51091	23.634	23.317	23.828	0.63014					18	9	3	0	0	0	0.91556	1	7274	7274		5.7834	0.73591	1	3683600			55199	6804	40175	40500	53874	53874					0.03252201909026553
TPVLLFCLCKP	11	Unmodified	_TPVLLFCLCKP_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MULTI-MSMS	A375_MHC_IP_R1	1	412.6301574707031	3	411.895984	1232.66612	0.099224	4.087E-05	-0.58432	-0.00024068	-0.48509	-0.00019981	411.8956471904952	39.416	0.60701	39.416	39.187	39.794	0					21	11	3	0	0	0	0.72565	2	13483	13439;13483		7.0371	0	1	6057600			55200	7535	40176	40501	53875;53876	53876					0.05909619489898432
TPVLLHGP	8	Unmodified	_TPVLLHGP_					0	0	0		ENST00000328257.12_1_11:73965610-73965709:+|nuORF	ENST00000328257.12_1_11:73965610-73965709:+|nuORF	ENST00000328257.12_1_11:73965610-73965709:+|nuORF	MSMS	A375_MHC_IP_R1	1	417.18634033203125	2	417.247621	832.480688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.521	1	71.521	71.021	72.021	0								0	0	0	0.13848	1	25991	25991		52.693	9.7251	1				55201	10748	40177	40502	53877	53877					0.057747210769548474
TPVLLHGP	8	Unmodified	_TPVLLHGP_					0	0	0		ENST00000328257.12_1_11:73965610-73965709:+|nuORF	ENST00000328257.12_1_11:73965610-73965709:+|nuORF	ENST00000328257.12_1_11:73965610-73965709:+|nuORF	MSMS	A375_MHC_IP_R1	1	417.647705078125	2	417.247621	832.480688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.658	1	71.658	71.158	72.158	0								0	0	0	0.13848	1	26046	26046		52.693	9.7251	1				55202	10748	40177	40502	53878	53878					0.057747210769548474
TPVLLHGP	8	Unmodified	_TPVLLHGP_					0	0	0		ENST00000328257.12_1_11:73965610-73965709:+|nuORF	ENST00000328257.12_1_11:73965610-73965709:+|nuORF	ENST00000328257.12_1_11:73965610-73965709:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	417.28363037109375	2	417.247621	832.480688	-0.27718	-0.00011565	0.33375	0.00013926	0.056572	2.3605E-05	417.2477301691014	49.956	1.3712	50.71	50.244	51.615	0.75406					55	26	4	0	0	0	0.64599	1	18804	18804		42.968	0	1	35163000			55203	10748	40177	40502	53879	53879					0.057747210769548474
TPVLLHGP	8	Unmodified	_TPVLLHGP_					0	0	0		ENST00000328257.12_1_11:73965610-73965709:+|nuORF	ENST00000328257.12_1_11:73965610-73965709:+|nuORF	ENST00000328257.12_1_11:73965610-73965709:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	417.6473388671875	2	417.247621	832.480688	-0.14543	-6.068E-05	-0.13572	-5.663E-05	-0.28115	-0.00011731	417.24751098374435	70.901	0.55725	71.636	71.402	71.959	0.73421					19	10	2	0	0	0	0.41058	1	26877	26877		52.693	9.7251	1	5636000			55204	10748	40177	40502	53880	53880					0.057747210769548474
TPVLSELPEPV	11	Unmodified	_TPVLSELPEPV_					0	0	0		ENSG00000106624|ENST00000223357|AEBP1;nc|ENSG00000106624|Q8IUX7-2|AEBP1	ENSG00000106624|ENST00000223357|AEBP1;nc|ENSG00000106624|Q8IUX7-2|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	393.60809326171875	3	394.220178	1179.63871	-0.61276	-0.00024156	3.9859	0.0015713	3.3731	0.0013297	394.22238835754007	25.591	0.2522	26.251	26.044	26.296	0.65992					6	4	2	0	0	0	0.9754	1	8520	8520		6.6235	0	1	756250			55205	2703;14529	40178	40503	53881	53881					0.05607130754856371
TPVPCRPPFP	10	Unmodified	_TPVPCRPPFP_					0	0	0			REV__ENST00000229340.9_1_12:120534355-120534604:-|nuORF	REV__ENST00000229340.9_1_12:120534355-120534604:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	370.6204528808594	3	370.863672	1109.56919	-0.030212	-1.1205E-05	0.15679	5.8148E-05	0.12658	4.6943E-05	371.19780385918165	24.972	0.91659	25.615	25.161	26.078	0.64368					33	17	2	0	0	0	0.9269	1	8496	8496		6.1918	2.3155	1	7875000	+		55206	23065	40179	40504	53882	53882					0.018783933251143026
TPVQSVMVSY	10	Unmodified	_TPVQSVMVSY_					0	0	0		nc|ENSG00000172995|Q9UBL0-4|ARPP21;nc|ENSG00000172995|Q9UBL0|ARPP21;nc|ENSG00000172995|Q9UBL0-3|ARPP21;ENSG00000172995|ENST00000684406|ARPP21;ENST00000476052.1_1_3:35833836-35835447:+|nuORF;nc|ENSG00000172995|Q9UBL0-5|ARPP21	nc|ENSG00000172995|Q9UBL0-4|ARPP21	nc|ENSG00000172995|Q9UBL0-4|ARPP21	MULTI-SECPEP	A375_MHC_IP_R2	2	370.6204528808594	3	370.854842	1109.5427	-0.056516	-2.0959E-05	3.6375	0.001349	3.581	0.001328	371.19071712099174	25.255	0.25629	25.898	25.822	26.078	0.64368					5	4	2	0	0	0	0.90853	1	8496	8496		9.544	0.56773	1	488800			55207	7758	40180	40505	53883	53883					-0.007693403568737267
TPVSLPPPVK	10	Unmodified	_TPVSLPPPVK_					0	0	0		ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	MULTI-SECPEP	A375_MHC_IP_R1	1	517.70556640625	2	517.815867	1033.61718	-0.52534	-0.00027203	1.1059	0.00057264	0.58053	0.00030061	517.8162381224927	74.994	0.40648	74.994	74.704	75.11	0					9	7	2	0	0	0	0.85226	1	27260	27260		10.074	3.3508	1	585780			55208	2272	40181	40506	53884	53884					0.10171790516801593
TPVSTIATTYT	11	Unmodified	_TPVSTIATTYT_					0	0	0			REV__nc|ENSG00000169894|Q02505-5|MUC3A	REV__nc|ENSG00000169894|Q02505-5|MUC3A	MULTI-SECPEP	A375_MHC_IP_R1	1	385.9359436035156	3	385.536166	1153.58667	-0.056654	-2.1842E-05	0.12317	4.7485E-05	0.066513	2.5643E-05	385.5360570289605	26.102	0.76001	26.102	25.917	26.677	0					33	14	3	0	0	0	0.95991	1	7732	7732		4.4062	3.6296	1	7690300	+		55209	20950	40182	40507	53885	53885					0.016019673410937685
TPVTKRRFHE	10	Unmodified	_TPVTKRRFHE_					0	0	0			REV__ENST00000399000.7_1_21:38639829-38640075:-|nuORF	REV__ENST00000399000.7_1_21:38639829-38640075:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	424.6383361816406	3	424.238678	1269.6942	-0.21228	-9.0056E-05	-0.52434	-0.00022245	-0.73662	-0.0003125	424.23837055248305	44.51	0.45646	45.279	45.138	45.594	0.7691					12	8	2	0	0	0	0.71619	1	16658	16658		5.0475	0.93089	1	2478100	+		55210	24386	40183	40508	53886	53886					0.07014401785841073
TPVTKRRFHE	10	Unmodified	_TPVTKRRFHE_					0	0	0			REV__ENST00000399000.7_1_21:38639829-38640075:-|nuORF	REV__ENST00000399000.7_1_21:38639829-38640075:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	424.238678	1269.6942	0.12268	5.2047E-05	-0.34113	-0.00014472	-0.21845	-9.2673E-05	424.2385129819351	45.611	0.55571	45.611	45.334	45.89	0	0.16613	9.4747E-05	NaN	5.0475	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2874500	+		55211	24386	40183	40508							0.07014401785841073
TPVVEKTAPF	10	Unmodified	_TPVVEKTAPF_					0	0	0			REV__ENST00000413379.7_1_19:47712517-47712769:+|nuORF	REV__ENST00000413379.7_1_19:47712517-47712769:+|nuORF	MSMS	A375_MHC_IP_R1	1	544.7079467773438	2	544.802957	1087.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.57	1	128.57	128.07	129.07	0								0	0	0	0.15435	1	49393	49393		6.7232	1.4263	1		+		55212	24495	40184	40509	53887	53887					0.05106896274514838
TPVVHPLA	8	Unmodified	_TPVVHPLA_					0	0	0			REV__ENST00000491496.1_1_7:803580-810256:+|nuORF	REV__ENST00000491496.1_1_7:803580-810256:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	833.8870239257812	1	833.487965	832.480688	-0.84875	-0.00070742	-0.13441	-0.00011203	-0.98316	-0.00081945	833.4878039076189	70.845	0.55725	71.579	71.402	71.959	0.73421					18	10	2	0	0	0	0.77702	1	26997	26997		5.7604	0	1	8780800	+		55213	20518	40185	40510	53888	53888					0.0577472107693211
TPVVHPLA	8	Unmodified	_TPVVHPLA_					0	0	0			REV__ENST00000491496.1_1_7:803580-810256:+|nuORF	REV__ENST00000491496.1_1_7:803580-810256:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	833.487965	832.480688	-0.14324	-0.00011939	-0.44399	-0.00037006	-0.58723	-0.00048945	833.4875243145299	71.626	0.65367	71.626	71.465	72.119	0	0.02353	-0.00012902	NaN	5.7604	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6327500	+		55214	20518	40185	40510							0.0577472107693211
TPVVHPLA	8	Unmodified	_TPVVHPLA_					0	0	0			REV__ENST00000491496.1_1_7:803580-810256:+|nuORF	REV__ENST00000491496.1_1_7:803580-810256:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	833.487965	832.480688	-0.84875	-0.00070742	-0.13441	-0.00011203	-0.98316	-0.00081945	833.4878039076189	70.845	0.55725	71.579	71.402	71.959	0.73421	-0.02353	0.00012901	NaN	5.7604	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8780800	+		55215	20518	40185	40510							0.0577472107693211
TPVYRENED	9	Unmodified	_TPVYRENED_					0	0	0		IQCE|p.K143N|1|0.2|ENSG00000106012|chr7:2573452-2573452|A/C|missense_variant	IQCE|p.K143N|1|0.2|ENSG00000106012|chr7:2573452-2573452|A/C|missense_variant	IQCE|p.K143N|1|0.2|ENSG00000106012|chr7:2573452-2573452|A/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	561.1976318359375	2	561.756735	1121.49892	-1.02	-0.00057297	0.15615	8.7719E-05	-0.86381	-0.00048525	561.7568267355205	25.198	0.60987	25.842	25.568	26.178	0.64368					29	11	4	0	0	0	0.75466	1	8514	8514		12.532	5.2423	1	13957000			55216	14171	40186	40511	53889	53889					-0.056972335296677556
TPWMRCPRP	9	Unmodified	_TPWMRCPRP_					0	0	0		ENST00000341712.8_1_17:16979036-17030049:+|nuORF	ENST00000341712.8_1_17:16979036-17030049:+|nuORF	ENST00000341712.8_1_17:16979036-17030049:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	381.6400146484375	3	381.856523	1142.54774	0.18719	7.1478E-05	2.5023	0.00095552	2.6895	0.001027	382.1919701176714	19.438	0.25331	19.438	19.318	19.571	0					5	4	2	0	0	0	0.75466	1	4763	4763		2.4985	0	1	1247800			55217	10872	40187	40512	53890	53890					-0.01783314975250505
TPWSESVL	8	Unmodified	_TPWSESVL_					0	0	0			REV__ENST00000414207.5_1_3:197350234-197351372:-|nuORF	REV__ENST00000414207.5_1_3:197350234-197351372:-|nuORF	MSMS	A375_MHC_IP_R2	2	459.6809387207031	2	459.732	917.449448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.499	1	85.235	84.735	85.735	0.73601								0	0	0	0.16876	1	32122	32122		14.582	2.9414	1		+		55218	24503	40188	40513	53891	53891					-0.0125789674779071
TPYGWLESW	9	Unmodified	_TPYGWLESW_					0	0	0		FUT5|p.P187S|1|0.75|ENSG00000130383|chr19:5867167-5867167|G/A|missense_variant	FUT5|p.P187S|1|0.75|ENSG00000130383|chr19:5867167-5867167|G/A|missense_variant	FUT5|p.P187S|1|0.75|ENSG00000130383|chr19:5867167-5867167|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	569.147705078125	2	569.763832	1137.51311	-0.13476	-7.6782E-05	-0.30969	-0.00017645	-0.44445	-0.00025323	569.7631380762436	46.929	0.45697	47.69	47.309	47.766	0.76128					12	8	2	0	0	0	0.65246	1	17518	17518		15.847	7.1018	1	1025100			55219	14027	40189	40514	53892	53892					-0.05014536310727635
TPYGWLESW	9	Unmodified	_TPYGWLESW_					0	0	0		FUT5|p.P187S|1|0.75|ENSG00000130383|chr19:5867167-5867167|G/A|missense_variant	FUT5|p.P187S|1|0.75|ENSG00000130383|chr19:5867167-5867167|G/A|missense_variant	FUT5|p.P187S|1|0.75|ENSG00000130383|chr19:5867167-5867167|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	569.763832	1137.51311	-0.18384	-0.00010474	-0.51419	-0.00029297	-0.69803	-0.00039771	569.7631881600686	47.66	0.50356	47.66	47.416	47.92	0	-0.0148	-6.2383E-05	NaN	15.847	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1327800			55220	14027	40189	40514							-0.05014536310727635
TQAEEFEATL	10	Unmodified	_TQAEEFEATL_					0	0	0			REV__nc|ENSG00000125844|Q9P2E9-3|RRBP1	REV__nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	570.1661376953125	2	569.766768	1137.51898	-0.24572	-0.00014001	-0.67475	-0.00038445	-0.92048	-0.00052446	569.7664373489581	62.143	0.86818	62.143	61.432	62.3	0					24	16	2	0	0	0	0.73104	1	22436	22436		19.362	0	1	4424600	+		55221	18367	40190	40515	53893	53893					-0.04427482589699139
TQAKKSRTV	9	Unmodified	_TQAKKSRTV_					0	0	0		ENST00000399136.5_1_21:37834011-37914886:-|nuORF	ENST00000399136.5_1_21:37834011-37914886:-|nuORF	ENST00000399136.5_1_21:37834011-37914886:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	509.36126708984375	2	509.803823	1017.59309	-0.68584	-0.00034964	-0.02486	-1.2674E-05	-0.7107	-0.00036232	509.8038081134693	132.91	0.40637	133.07	132.89	133.3	0.16487					12	7	3	0	0	0	0.67483	1	52233	52233		3.2813	0	1	5200200			55222	11535	40191	40516	53894	53894					0.08499950083137264
TQAKQLKLF	9	Unmodified	_TQAKQLKLF_					0	0	0			REV__ENST00000606725.5_1_19:19414686-19431305:-|nuORF	REV__ENST00000606725.5_1_19:19414686-19431305:-|nuORF	MSMS	A375_MHC_IP_R1	1	359.4284362792969	3	359.553603	1075.63898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.932	1	72.932	72.432	73.432	0								0	0	0	0.15486	1	26544	26544		9.544	0.79857	1		+		55223	17405	40192	40517	53895	53895					0.1041859526535518
TQAMDEADYY	10	Unmodified	_TQAMDEADYY_					0	0	0		nc|ENSG00000211673|P01715|IGLV3-1	nc|ENSG00000211673|P01715|IGLV3-1	nc|ENSG00000211673|P01715|IGLV3-1	MSMS	A375_MHC_IP_R1	1	402.5796813964844	3	402.825499	1205.45467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.23	1	104.23	103.73	104.73	0								0	0	0	0.15596	1	38275	38275		0.62683	0.12087	1				55224	14874	40193	40518	53896	53896					-0.13984005738143424
TQAQHNIYY	9	Unmodified	_TQAQHNIYY_					0	0	0			REV__nc|ENSG00000102385|Q13474-2|DRP2	REV__nc|ENSG00000102385|Q13474-2|DRP2	MULTI-MSMS	A375_MHC_IP_R1	1	569.1827392578125	2	569.269813	1136.52507	-0.12216	-6.9543E-05	0.52204	0.00029718	0.39987	0.00022764	569.2700979461827	35.804	1.2725	35.804	34.912	36.184	0					61	24	4	0	0	0	0.55818	1	11641	11641		16.942	16.942	1	53498000	+		55225	17219	40194	40519	53897	53897					-0.03772919567518329
TQAQHNIYY	9	Unmodified	_TQAQHNIYY_					0	0	0			REV__nc|ENSG00000102385|Q13474-2|DRP2	REV__nc|ENSG00000102385|Q13474-2|DRP2	MULTI-MSMS	A375_MHC_IP_R2	2	569.6708374023438	2	569.269813	1136.52507	-0.54984	-0.00031301	1.0602	0.00060355	0.51038	0.00029055	569.2702830217436	35.005	1.4694	35.768	35.017	36.486	0.76338					82	28	4	0	0	0	0.55818	1	12475	12475		16.942	3.0362	1	43954000	+		55226	17219	40194	40519	53898	53898					-0.03772919567518329
TQARRRRRKFP	11	Unmodified	_TQARRRRRKFP_					0	0	0		ENST00000475854.1_1_X:100914419-100914797:-|nuORF;ENST00000328766.9_1_X:100913503-100914797:-|nuORF	ENST00000475854.1_1_X:100914419-100914797:-|nuORF	ENST00000475854.1_1_X:100914419-100914797:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	491.69891357421875	3	491.299153	1470.87563	-0.33976	-0.00016692	0.13005	6.3893E-05	-0.20971	-0.00010303	491.29909963463336	138.4	2.4305	138.49	138.11	140.54	0.083969					116	47	5	0	0	0	0.73925	1	54261	54261		0.08335	0.08335	1	31721000			55227	10751	40195	40520	53899	53899					0.15902759602249716
TQAVRAVAF	9	Unmodified	_TQAVRAVAF_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47;WDR47|p.H615Y|1|0.55|ENSG00000085433|chr1:108986605-108986605|G/A|missense_variant	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MULTI-SECPEP	A375_MHC_IP_R1	1	482.17437744140625	2	481.774534	961.534515	-0.26315	-0.00012678	-0.051234	-2.4683E-05	-0.31439	-0.00015146	481.77452183770214	45.966	0.65838	45.966	45.687	46.345	0					22	12	3	0	0	0	0.23894	1	16098	16098		55.503	35.088	1	5636500			55228	1812	40196	40521	53900	53900					0.05220893508658264
TQAVRAVAF	9	Unmodified	_TQAVRAVAF_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47;WDR47|p.H615Y|1|0.55|ENSG00000085433|chr1:108986605-108986605|G/A|missense_variant	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MULTI-SECPEP	A375_MHC_IP_R2	2	482.17352294921875	2	481.774534	961.534515	-0.67073	-0.00032314	-0.30127	-0.00014515	-0.972	-0.00046828	481.77435649469703	45.081	0.5601	45.85	45.594	46.154	0.7691					22	10	3	0	0	0	0.14606	1	16834	16834		63.961	24.003	1	5546900			55229	1812	40196	40521	53901	53901					0.05220893508658264
TQCYYQGNIEG	11	Unmodified	_TQCYYQGNIEG_					0	0	0		ADAM32|p.R617Gfs*17|1|0.26|ENSG00000197140|chr8:39246112-39246122|AAGGATAATTA/-|frameshift_variant;ENSG00000197140|ENST00000379907|ADAM32	ADAM32|p.R617Gfs*17|1|0.26|ENSG00000197140|chr8:39246112-39246122|AAGGATAATTA/-|frameshift_variant	ADAM32|p.R617Gfs*17|1|0.26|ENSG00000197140|chr8:39246112-39246122|AAGGATAATTA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	637.6881103515625	2	638.269152	1274.52375	-0.95303	-0.00060829	-0.044488	-2.8396E-05	-0.99752	-0.00063669	638.2690546202465	32.692	0.30178	32.692	32.535	32.836	0					7	5	2	0	0	0	0.98524	1	10556	10556		15.248	8.1468	1	1605300			55230	50	40197	40522	53902	53902					-0.102529217186202
TQDFLPYK	8	Unmodified	_TQDFLPYK_					0	0	0		nc|ENSG00000079482|O60890-2|OPHN1;ENSG00000079482|ENST00000355520|OPHN1	nc|ENSG00000079482|O60890-2|OPHN1	nc|ENSG00000079482|O60890-2|OPHN1	MULTI-SECPEP	A375_MHC_IP_R2	2	506.63690185546875	2	506.260925	1010.5073	-0.62838	-0.00031812	0.1513	7.6595E-05	-0.47708	-0.00024153	506.7626872074133	87.366	0.55619	88.098	87.812	88.368	0.73283					11	8	2	0	0	0	0.972	1	33133	33133		6.2058	1.8765	1	1512100			55231	1698	40198	40523	53903	53903					0.0024636517761109644
TQDGELYCEK	10	Unmodified	_TQDGELYCEK_					0	0	0			REV__ENST00000544349.5_1_12:122735394-122750988:-|nuORF	REV__ENST00000544349.5_1_12:122735394-122750988:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	396.2806396484375	3	395.841261	1184.50195	-0.33716	-0.00013346	1.31	0.00051854	0.97282	0.00038508	395.8414098665775	23.679	0.20315	23.679	23.584	23.787	0					5	3	2	0	0	0	0.92957	1	6518	6518		0.56317	0	1	746030	+		55232	19175	40199	40524	53904	53904					-0.08291726467177796
TQDLSLSRSD	10	Unmodified	_TQDLSLSRSD_					0	0	0			REV__PLEKHA7|p.P450S|1|0.47|ENSG00000166689|chr11:16817318-16817318|G/A|missense_variant	REV__PLEKHA7|p.P450S|1|0.47|ENSG00000166689|chr11:16817318-16817318|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	561.7005615234375	2	561.275292	1120.53603	-0.65191	-0.0003659	-0.52009	-0.00029191	-1.172	-0.00065781	561.2747679240109	52.918	0.60725	52.918	52.643	53.25	0					17	11	2	0	0	0	0.51509	1	18819	18819		27.223	5.6331	1	2765100	+		55233	27802	40200	40525	53905	53905					-0.01941561983903739
TQDLSLSRSD	10	Unmodified	_TQDLSLSRSD_					0	0	0			REV__PLEKHA7|p.P450S|1|0.47|ENSG00000166689|chr11:16817318-16817318|G/A|missense_variant	REV__PLEKHA7|p.P450S|1|0.47|ENSG00000166689|chr11:16817318-16817318|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	561.674072265625	2	561.275292	1120.53603	-0.97926	-0.00054963	-0.78059	-0.00043812	-1.7598	-0.00098776	561.2748955415674	52.13	0.55685	52.882	52.677	53.234	0.75225					17	10	2	0	0	0	0.42311	1	19644	19644		32.786	32.786	1	3180800	+		55234	27802	40200	40525	53906	53906					-0.01941561983903739
TQDNGDHIW	9	Unmodified	_TQDNGDHIW_					0	0	0		ENSG00000127311|ENST00000247815|HELB;nc|ENSG00000127311|Q8NG08-2|HELB	ENSG00000127311|ENST00000247815|HELB	ENSG00000127311|ENST00000247815|HELB	MULTI-MSMS	A375_MHC_IP_R2	2	543.635498046875	2	543.23597	1084.45739	-0.84434	-0.00045868	-0.095804	-5.2044E-05	-0.94015	-0.00051072	543.2359545807096	41.724	0.66372	42.499	42.249	42.913	0.77451					19	12	2	0	0	0	0.46038	1	15561	15561		21.747	0.20967	1	3132600			55235	4082	40201	40526	53907	53907					-0.08146369498331296
TQDPSWLEGIV	11	Unmodified	_TQDPSWLEGIV_					0	0	0			REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2	REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2	MULTI-MSMS	A375_MHC_IP_R1	1	415.94305419921875	3	415.543432	1243.60847	0.50766	0.00021096	-0.69589	-0.00028917	-0.18823	-7.8218E-05	415.5423648481322	42.887	0.71268	42.887	42.638	43.351	0					36	13	4	0	0	0	0.65918	1	14884	14884		18.721	5.8486	1	3430900	+		55236	21427	40202	40527	53908	53908					-0.0035922791032589885
TQDSWERLY	9	Unmodified	_TQDSWERLY_					0	0	0		ENSG00000185313|ENST00000449082|SCN10A	ENSG00000185313|ENST00000449082|SCN10A	ENSG00000185313|ENST00000449082|SCN10A	MULTI-MSMS	A375_MHC_IP_R1	1	600.197998046875	2	599.280377	1196.5462	-0.39549	-0.00023701	0.32263	0.00019335	-0.072858	-4.3662E-05	599.2804165362912	60.534	0.86537	60.534	60.006	60.871	0					38	16	4	0	0	0	0.52905	1	21710	21710		25.399	10.561	1	11233000			55237	8658	40203	40528	53909	53909					-0.04420954258648635
TQDSWERLY	9	Unmodified	_TQDSWERLY_					0	0	0		ENSG00000185313|ENST00000449082|SCN10A	ENSG00000185313|ENST00000449082|SCN10A	ENSG00000185313|ENST00000449082|SCN10A	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	599.280377	1196.5462	-0.39549	-0.00023701	0.32263	0.00019335	-0.072858	-4.3662E-05	599.2804165362912	60.534	0.86537	60.534	60.006	60.871	0	0.0099699	0.00012302	NaN	25.399	38	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11233000			55238	8658	40203	40528							-0.04420954258648635
TQDSWERLY	9	Unmodified	_TQDSWERLY_					0	0	0		ENSG00000185313|ENST00000449082|SCN10A	ENSG00000185313|ENST00000449082|SCN10A	ENSG00000185313|ENST00000449082|SCN10A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	599.280377	1196.5462	-0.89053	-0.00053368	0.13829	8.2872E-05	-0.75225	-0.00045081	599.2802717656449	59.767	0.80775	60.514	60.047	60.855	0.74714	-0.0099699	-9.7926E-05	NaN	25.399	36	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10263000			55239	8658	40203	40528							-0.04420954258648635
TQDTPNPNSL	10	Unmodified	_TQDTPNPNSL_					0	0	0		nc|ENSG00000169599|Q9UMS0-3|NFU1;ENSG00000169599|ENST00000410022|NFU1	nc|ENSG00000169599|Q9UMS0-3|NFU1	nc|ENSG00000169599|Q9UMS0-3|NFU1	MULTI-MSMS	A375_MHC_IP_R2	2	543.7119750976562	2	543.756735	1085.49892	-0.73685	-0.00040067	-1.8823	-0.0010235	-2.6191	-0.0014242	543.7558607757634	69.542	1.5233	70.276	69.829	71.352	0.73421					70	29	3	0	0	0	0.19699	1	26475	26475		49.554	5.1473	1	4132600			55240	7420	40204	40529	53910	53910					-0.04041233529665078
TQEDAYESI	9	Unmodified	_TQEDAYESI_					0	0	0		MCOLN2|p.N177Kfs*2|1|0.17|ENSG00000153898|chr1:84956465-84956466|-/T|frameshift_variant;ENST00000531325.5_1_1:85403252-85462600:-|nuORF;MCOLN2|p.S489Dfs*14|1|0.35|ENSG00000153898|chr1:84931414-84931439|ATATATATAAAAAGGCTGATGAAGGA/-|frameshift_variant;nc|ENSG00000153898|Q8IZK6-2|MCOLN2;ENSG00000153898|ENST00000370608|MCOLN2	MCOLN2|p.N177Kfs*2|1|0.17|ENSG00000153898|chr1:84956465-84956466|-/T|frameshift_variant	MCOLN2|p.N177Kfs*2|1|0.17|ENSG00000153898|chr1:84956465-84956466|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	1055.9676513671875	1	1055.45276	1054.44548	0.17469	0.00018438	-0.69797	-0.00073668	-0.52328	-0.0005523	1055.451643058059	63.541	0.81625	63.541	63.274	64.09	0					28	15	3	0	0	0	0.75164	1	22906	22906		13.906	3.0821	1	3357700			55241	6046	40205	40530	53911	53911					-0.07956031032176725
TQEERNVYQ	9	Unmodified	_TQEERNVYQ_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-SECPEP	A375_MHC_IP_R2	2	584.153076171875	2	583.775459	1165.53637	-0.87136	-0.00050868	0.24864	0.00014515	-0.62272	-0.00036353	583.7753586796614	25.359	0.45821	26.002	25.822	26.28	0.64368					13	8	2	0	0	0	0.63327	1	8473	8473		18.146	1.0335	1	3941500	+		55242	19795	40206	40531	53912	53912					-0.03978142264031703
TQEFITQNN	9	Unmodified	_TQEFITQNN_					0	0	0			REV__ZHX1|p.N149I|1|0.28|ENSG00000165156|chr8:123255501-123255501|T/A|missense_variant	REV__ZHX1|p.N149I|1|0.28|ENSG00000165156|chr8:123255501-123255501|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	547.2111206054688	2	547.759278	1093.504	-0.4304	-0.00023576	-0.57934	-0.00031734	-1.0097	-0.00055309	547.7588721689889	40.5	0.40758	40.5	40.304	40.712	0					9	6	2	0	0	0	0.60101	1	13939	13939		14.838	3.198	1	1565500	+		55243	20553	40207	40532	53913	53913					-0.03900929667065611
TQEKRNRSSW	10	Unmodified	_TQEKRNRSSW_					0	0	0		ENSG00000165072|ENST00000377182|MAMDC2;ENST00000460688.1_1_9:72783617-72785588:+|nuORF	ENSG00000165072|ENST00000377182|MAMDC2	ENSG00000165072|ENST00000377182|MAMDC2	MULTI-SECPEP	A375_MHC_IP_R1	1	431.2882080078125	3	431.221575	1290.6429	-0.03602	-1.5533E-05	1.0872	0.00046884	1.0512	0.0004533	431.22225729979505	52.008	0.3066	52.008	51.778	52.085	0					8	5	2	0	0	0	0.94363	1	18442	18442		3.0723	0	1	1465000			55244	6908	40208	40533	53914	53914					0.009200330211342589
TQESDFSRSF	10	Unmodified	_TQESDFSRSF_					0	0	0		nc|ENSG00000126259|Q6UWL6-3|KIRREL2;nc|ENSG00000126259|Q6UWL6-2|KIRREL2;ENSG00000126259|ENST00000360202|KIRREL2	nc|ENSG00000126259|Q6UWL6-3|KIRREL2	nc|ENSG00000126259|Q6UWL6-3|KIRREL2	MULTI-MSMS	A375_MHC_IP_R1	1	602.6798095703125	2	602.267467	1202.52038	-0.60746	-0.00036585	0.15834	9.5363E-05	-0.44912	-0.00027049	602.2675228763405	32.74	0.2518	32.74	32.585	32.836	0					13	4	4	0	0	0	0.39599	1	10639	10639		34.402	9.4108	1	9352900			55245	4035	40209	40534	53915	53915					-0.07277848500962136
TQESDFSRSF	10	Unmodified	_TQESDFSRSF_					0	0	0		nc|ENSG00000126259|Q6UWL6-3|KIRREL2;nc|ENSG00000126259|Q6UWL6-2|KIRREL2;ENSG00000126259|ENST00000360202|KIRREL2	nc|ENSG00000126259|Q6UWL6-3|KIRREL2	nc|ENSG00000126259|Q6UWL6-3|KIRREL2	MULTI-MSMS	A375_MHC_IP_R2	2	602.6798706054688	2	602.267467	1202.52038	-0.49151	-0.00029602	0.28527	0.00017181	-0.20624	-0.00012421	602.2677085838964	32.09	0.40578	32.827	32.605	33.01	0.73692					14	7	3	0	0	0	0.33265	1	11398	11398		38.176	13.185	1	7197500			55246	4035	40209	40534	53916	53916					-0.07277848500962136
TQEYEPAQEPV	11	Unmodified	_TQEYEPAQEPV_					0	0	0		nc|ENSG00000157168|Q02297-11|NRG1;nc|ENSG00000157168|Q02297-7|NRG1;ENSG00000157168|ENST00000405005|NRG1;nc|ENSG00000157168|Q02297-6|NRG1;nc|ENSG00000157168|Q02297-2|NRG1	nc|ENSG00000157168|Q02297-11|NRG1	nc|ENSG00000157168|Q02297-11|NRG1	MULTI-MSMS	A375_MHC_IP_R1	1	646.1953125	2	645.796057	1289.57756	-0.71088	-0.00045908	-0.055988	-3.6157E-05	-0.76686	-0.00049524	645.7959305517858	26.043	0.65809	26.043	25.866	26.524	0					33	12	3	0	0	0	0.10313	1	7709	7709		69.338	27.499	1	16004000			55247	6232	40210	40535	53917	53917					-0.05564426015234858
TQEYEPAQEPV	11	Unmodified	_TQEYEPAQEPV_					0	0	0		nc|ENSG00000157168|Q02297-11|NRG1;nc|ENSG00000157168|Q02297-7|NRG1;ENSG00000157168|ENST00000405005|NRG1;nc|ENSG00000157168|Q02297-6|NRG1;nc|ENSG00000157168|Q02297-2|NRG1	nc|ENSG00000157168|Q02297-11|NRG1	nc|ENSG00000157168|Q02297-11|NRG1	MULTI-MSMS	A375_MHC_IP_R2	2	646.1954345703125	2	645.796057	1289.57756	-1.1309	-0.00073033	0.15955	0.00010303	-0.97135	-0.0006273	645.7961056282965	25.503	0.66033	26.147	25.976	26.637	0.64368					34	12	3	0	0	0	0.12606	1	8536	8536		65.474	15.919	1	13134000			55248	6232	40210	40535	53918	53918					-0.05564426015234858
TQFWEHRQTQP	11	Unmodified	_TQFWEHRQTQP_					0	0	0		ENST00000372067.7_1_6:43752845-43752986:+|nuORF	ENST00000372067.7_1_6:43752845-43752986:+|nuORF	ENST00000372067.7_1_6:43752845-43752986:+|nuORF	MSMS	A375_MHC_IP_R2	2	729.582763671875	2	729.349657	1456.68476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.037	1	32.774	32.274	33.274	0.73692								0	0	0	0.1624	1	11365	11365		7.609	5.1105	1				55249	11189	40211	40536	53919	53919					-0.025314112903515706
TQGCIACC	8	Unmodified	_TQGCIACC_					0	0	0			REV__nc|ENSG00000214022|Q9BWE0|REPIN1	REV__nc|ENSG00000214022|Q9BWE0|REPIN1	MSMS	A375_MHC_IP_R2	2	399.650634765625	2	399.650784	797.287016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.20263	1	0.67308	0.17308	1.1731	0.47044								0	0	0	0.16876	1	73	73		0.79363	0	1		+		55250	22642	40212	40537	53920	53920					-0.11973643017472568
TQGPRALW	8	Unmodified	_TQGPRALW_					0	0	0		ENST00000508781.5_1_5:110073914-110092698:+|nuORF;nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46	ENST00000508781.5_1_5:110073914-110092698:+|nuORF	ENST00000508781.5_1_5:110073914-110092698:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	465.15325927734375	2	464.753601	927.49265	-0.12415	-5.7698E-05	-0.17624	-8.1908E-05	-0.30039	-0.00013961	464.7535236093723	52.008	0.40798	52.008	51.778	52.186	0					14	7	2	0	0	0	0.7011	1	18492	18492		34.402	5.9149	1	1977900			55251	6802	40213	40538	53921	53921					0.026003378201380656
TQGSRAPCLL	10	Unmodified	_TQGSRAPCLL_					0	0	0		ENST00000468115.1_1_7:1522065-1522398:-|nuORF	ENST00000468115.1_1_7:1522065-1522398:-|nuORF	ENST00000468115.1_1_7:1522065-1522398:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	523.674560546875	2	523.276583	1044.53861	-0.46919	-0.00024552	-0.32173	-0.00016835	-0.79092	-0.00041387	523.2748837520409	109.06	2.3446	109.8	108.7	111.05	0.74684					74	45	3	0	0	0	0.63639	1	41258	41258		18.146	1.2041	1	4276200			55252	12296	40214	40539	53922	53922					0.018126149400586655
TQGSRAPCLL	10	Unmodified	_TQGSRAPCLL_					0	0	0		ENST00000468115.1_1_7:1522065-1522398:-|nuORF	ENST00000468115.1_1_7:1522065-1522398:-|nuORF	ENST00000468115.1_1_7:1522065-1522398:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	523.276583	1044.53861	-0.29616	-0.00015498	-0.32906	-0.00017219	-0.62522	-0.00032716	523.2748498951383	109.69	2.4907	109.69	108.46	110.95	0	-0.058425	-3.3548E-06	NaN	18.146	92	48	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3691200			55253	12296	40214	40539							0.018126149400586655
TQHIIYDSSF	10	Unmodified	_TQHIIYDSSF_					0	0	0			REV__nc|ENSG00000167377|P17027-2|ZNF23	REV__nc|ENSG00000167377|P17027-2|ZNF23	MULTI-SECPEP	A375_MHC_IP_R1	1	605.2113037109375	2	605.790578	1209.5666	-0.37361	-0.00022633	-2.6369	-0.0015974	-3.0105	-0.0018237	605.7909515246522	79.957	0.30679	79.957	79.728	80.034	0					10	5	3	0	0	0	0.87163	1	29122	29122		2.9952	0	1	1136200	+		55254	20753	40215	40540	53923	53923					-0.029797835988802035
TQHLALETCF	10	Unmodified	_TQHLALETCF_					0	0	0		ENST00000528706.5_1_11:117279912-117282881:+|nuORF	ENST00000528706.5_1_11:117279912-117282881:+|nuORF	ENST00000528706.5_1_11:117279912-117282881:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	388.93634033203125	3	388.190225	1161.54884	-0.43287	-0.00016804	2.4204	0.00093959	1.9876	0.00077155	388.1913875046886	38.781	0.40922	39.555	39.351	39.76	0.77451					12	7	2	0	0	0	0.92227	1	14330	14330		7.9454	3.5392	1	923070			55255	13121	40216	40541	53924	53924					-0.025468221253504453
TQILSVPKV	9	Unmodified	_TQILSVPKV_					0	0	0		nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	MULTI-SECPEP	A375_MHC_IP_R2	2	493.20758056640625	2	492.808042	983.601532	-0.39998	-0.00019711	-0.11065	-5.4531E-05	-0.51063	-0.00025164	492.80796075050006	68.563	0.8113	69.298	68.968	69.779	0.73511					23	15	2	0	0	0	0.36673	1	25951	25951		32.037	4.4087	1	4005300			55256	14568	40217	40542	53925	53925					0.10907503999749224
TQIQSVKPYTK	11	Unmodified	_TQIQSVKPYTK_					0	0	0		STAT3|p.E638K|1|0.07|ENSG00000168610|chr17:42322471-42322471|C/T|missense_variant	STAT3|p.E638K|1|0.07|ENSG00000168610|chr17:42322471-42322471|C/T|missense_variant	STAT3|p.E638K|1|0.07|ENSG00000168610|chr17:42322471-42322471|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	647.2637329101562	2	646.864077	1291.7136	-0.30605	-0.00019797	-0.47708	-0.00030861	-0.78313	-0.00050658	646.863676637834	101.92	0.95979	101.92	101.55	102.51	0					49	18	4	0	0	0	0.83878	1	37401	37401		33.445	33.445	1	15187000			55257	29259	40218	40543	53926	53926					0.07941313286073637
TQIQSVKPYTK	11	Unmodified	_TQIQSVKPYTK_					0	0	0		STAT3|p.E638K|1|0.07|ENSG00000168610|chr17:42322471-42322471|C/T|missense_variant	STAT3|p.E638K|1|0.07|ENSG00000168610|chr17:42322471-42322471|C/T|missense_variant	STAT3|p.E638K|1|0.07|ENSG00000168610|chr17:42322471-42322471|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	647.2645263671875	2	646.864077	1291.7136	-0.55291	-0.00035766	0.14099	9.1204E-05	-0.41191	-0.00026645	646.86404482131	101.17	0.91794	101.93	101.6	102.51	0.76428					49	17	4	0	0	0	0.83878	1	38299	38299		33.445	33.445	1	17049000			55258	29259	40218	40543	53927	53927					0.07941313286073637
TQITLLFKNG	10	Unmodified	_TQITLLFKNG_					0	0	0		tr|U7SES3|U7SES3_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02340PE=4SV=1	tr|U7SES3|U7SES3_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02340PE=4SV=1	tr|U7SES3|U7SES3_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02340PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	379.62298583984375	3	378.888763	1133.64446	-0.27029	-0.00010241	0.15121	5.729E-05	-0.11908	-4.512E-05	378.88872099206606	59.78	0.65691	60.527	60.198	60.855	0.74714					27	12	3	0	0	0	0.64017	1	22619	22619		17.863	7.5479	1	4902800			55259	29387	40219	40544	53928	53928					0.08298274057187882
TQIVTERLVAL	11	Unmodified	_TQIVTERLVAL_					0	0	0		ENSG00000111266|ENST00000298573|DUSP16;nc|ENSG00000111266|Q9BY84-2|DUSP16	ENSG00000111266|ENST00000298573|DUSP16	ENSG00000111266|ENST00000298573|DUSP16	MULTI-SECPEP	A375_MHC_IP_R1	1	414.6308288574219	3	414.918722	1241.73434	0.023521	9.7592E-06	0.71679	0.00029741	0.74031	0.00030717	414.9189461782312	26.016	0.25354	26.016	25.917	26.17	0					7	4	2	0	0	0	0.9889	1	7668	7668		2.2527	0.79761	1	1390700			55260	2979	40220	40545	53929	53929					0.12313903665767612
TQIYQETNMI	10	Unmodified	_TQIYQETNMI_					0	0	0			REV__nc|ENSG00000111696|Q86UY8-2|NT5DC3	REV__nc|ENSG00000111696|Q86UY8-2|NT5DC3	MULTI-SECPEP	A375_MHC_IP_R2	2	414.3033752441406	3	414.200789	1239.58054	-0.32336	-0.00013393	-1.5798	-0.00065437	-1.9032	-0.0007883	414.53418154119277	23.223	1.016	23.853	23.113	24.129	0.63014					20	19	2	0	0	0	0.93194	1	7533	7533		5.4027	4.1879	1	2175400	+		55261	17687	40221	40546	53930	53930					-0.029668741620525907
TQKDKILRI	9	Unmodified	_TQKDKILRI_					0	0	0			REV__ENSG00000003756|ENST00000347869|RBM5	REV__ENSG00000003756|ENST00000347869|RBM5	MULTI-SECPEP	A375_MHC_IP_R1	1	558.2504272460938	2	557.850773	1113.68699	-0.51682	-0.00028831	-0.37689	-0.00021025	-0.89371	-0.00049856	557.8507015740516	73.26	0.50777	73.26	73.031	73.539	0					22	9	3	0	0	0	0.41434	1	26654	26654		32.786	11.249	1	6700400	+		55262	16093	40222	40547	53931	53931					0.1346966918540602
TQKPSPAPDDW	11	Unmodified	_TQKPSPAPDDW_					0	0	0		ENSG00000088320|ENST00000201979|REM1	ENSG00000088320|ENST00000201979|REM1	ENSG00000088320|ENST00000201979|REM1	MULTI-SECPEP	A375_MHC_IP_R2	2	414.63067626953125	3	414.531415	1240.57242	-0.43058	-0.00017849	-1.7965	-0.0007447	-2.2271	-0.00092318	414.5305443152437	25.204	0.20541	25.848	25.719	25.924	0.64368					5	3	2	0	0	0	0.99165	1	8429	8429		8.7518	8.0541	1	1106000			55263	1888	40223	40548	53932	53932					-0.03824685087192847
TQKRSFRCQY	10	Unmodified	_TQKRSFRCQY_					0	0	0			REV__ENST00000438549.5_2_20:35395227-35402097:-|nuORF	REV__ENST00000438549.5_2_20:35395227-35402097:-|nuORF	MSMS	A375_MHC_IP_R2	2	659.229736328125	2	658.830046	1315.64554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.772	1	98.528	98.028	99.028	0.75586								0	0	0	0.1524	1	37105	37105		13.042	1.5478	1		+		55264	24786	40224	40549	53933	53933					0.00034165154443144274
TQKSSCYF	8	Unmodified	_TQKSSCYF_					0	0	0		nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8;TBC1D8|p.E142Sfs*57|1|0.18|ENSG00000204634|chr2:101054271-101054272|-/ACTC|frameshift_variant	nc|ENSG00000204634|O95759|TBC1D8	nc|ENSG00000204634|O95759|TBC1D8	MSMS	A375_MHC_IP_R1	1	482.17437744140625	2	482.21566	962.416767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.941	1	45.941	45.441	46.441	0								0	0	0	0.16876	1	16098	16098		9.3474	0	1				55265	9472	40225	40550	53934	53934					-0.06594427142317727
TQKVLPGK	8	Unmodified	_TQKVLPGK_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	MULTI-SECPEP	A375_MHC_IP_R2	2	435.2667236328125	2	435.774003	869.533452	-0.21082	-9.1868E-05	-0.62517	-0.00027243	-0.83598	-0.0003643	435.77377659253847	42.572	0.45769	43.344	43.065	43.523	0.7724					11	8	2	0	0	0	0.972	1	15828	15828		5.2307	0	1	1430200	+		55266	20216	40226	40551	53935	53935					0.09346679139753178
TQLDFEDMSW	10	Unmodified	_TQLDFEDMSW_					0	0	0			REV__nc|ENSG00000257242|G3V211-3|LINC01619	REV__nc|ENSG00000257242|G3V211-3|LINC01619	MULTI-MSMS	A375_MHC_IP_R2	2	636.2190551757812	2	636.266078	1270.5176	-0.91636	-0.00058305	0.12912	8.2153E-05	-0.78724	-0.0005009	636.2660094729231	66.489	0.51157	67.225	66.882	67.393	0.73631					14	9	2	0	0	0	0.69306	2	25172	25172;25234		13.906	1.6654	1	1505200	+		55267	27532	40227	40552	53936;53937	53936					-0.10683439950116735
TQLDFEDMSW	10	Unmodified	_TQLDFEDMSW_					0	0	0			REV__nc|ENSG00000257242|G3V211-3|LINC01619	REV__nc|ENSG00000257242|G3V211-3|LINC01619	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	636.266078	1270.5176	-0.95221	-0.00060586	1.0764	0.00068489	0.12421	7.9031E-05	636.7682003448746	66.964	0.46001	66.964	66.734	67.194	0	-0.13053	0.00022482	NaN	13.906	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1152300	+		55268	27532	40227	40552							-0.10683439950116735
TQLDFEDMSW	10	Unmodified	_TQLDFEDMSW_					0	0	0			REV__nc|ENSG00000257242|G3V211-3|LINC01619	REV__nc|ENSG00000257242|G3V211-3|LINC01619	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	636.266078	1270.5176	-0.91636	-0.00058305	0.12912	8.2153E-05	-0.78724	-0.0005009	636.2660094729231	66.489	0.51157	67.225	66.882	67.393	0.73631	0.13053	-0.00098066	NaN	13.906	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1505200	+		55269	27532	40227	40552							-0.10683439950116735
TQLDLRQL	8	Unmodified	_TQLDLRQL_					0	0	0			REV__ENST00000274853.7_1_6:30655239-30655527:-|nuORF	REV__ENST00000274853.7_1_6:30655239-30655527:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	493.1426696777344	2	493.785099	985.555644	-0.72099	-0.00035601	-0.060654	-2.995E-05	-0.78164	-0.00038596	493.78497906120947	49.162	0.55622	49.919	49.741	50.297	0.75737					15	10	2	0	0	0	0.9187	1	18485	18485		13.906	2.2658	1	2282300	+		55270	23294	40228	40553	53938	53938					0.062288588175078985
TQLEQLYQW	9	Unmodified	_TQLEQLYQW_					0	0	0		nc|ENSG00000023909|P48507-2|GCLM;ENSG00000023909|ENST00000370238|GCLM	nc|ENSG00000023909|P48507-2|GCLM	nc|ENSG00000023909|P48507-2|GCLM	MSMS	A375_MHC_IP_R2	2	604.7371826171875	2	604.800946	1207.58734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.11	1	33.862	33.362	34.362	0.75225								0	0	0	0.15142	1	11836	11836		19.257	0	1				55271	1081	40229	40554	53939	53939					-0.008151932191822198
TQLGPPYHIL	10	Unmodified	_TQLGPPYHIL_					0	0	0		ENSG00000119616|ENST00000341162|FCF1	ENSG00000119616|ENST00000341162|FCF1	ENSG00000119616|ENST00000341162|FCF1	MULTI-SECPEP	A375_MHC_IP_R1	1	570.217529296875	2	569.816399	1137.61824	-0.18878	-0.00010757	0.8549	0.00048714	0.66613	0.00037957	569.8167743241994	81.936	0.50734	81.936	81.809	82.316	0					12	9	2	0	0	0	0.40545	1	29975	29975		47.749	18.667	1	2270000			55272	3605	40230	40555	53940	53940					0.05494004885713366
TQLKWNEL	8	Unmodified	_TQLKWNEL_					0	0	0			REV__ENSG00000181215|ENST00000531445|C4orf50	REV__ENSG00000181215|ENST00000531445|C4orf50	MULTI-SECPEP	A375_MHC_IP_R2	2	516.6845092773438	2	516.279649	1030.54475	-1.0776	-0.00055634	0.51116	0.0002639	-0.56644	-0.00029244	516.2800197322256	61.175	0.40351	61.92	61.769	62.172	0.74504					11	7	2	0	0	0	0.85715	1	23137	23137		29.082	15.176	1	2759400	+		55273	21642	40231	40556	53941	53941					0.030694564432451443
TQLLLNLL	8	Unmodified	_TQLLLNLL_					0	0	0			REV__ENSG00000111863|ENST00000414691|ADTRP	REV__ENSG00000111863|ENST00000414691|ADTRP	MULTI-MSMS	A375_MHC_IP_R1	1	464.6968078613281	2	464.29731	926.580068	-0.22856	-0.00010612	-0.56371	-0.00026173	-0.79227	-0.00036785	464.297090525686	74.948	0.50692	74.948	74.653	75.16	0					14	9	2	0	0	0	0.73946	1	27330	27330		23.148	0	1	969040	+		55274	17701	40232	40557	53942	53942					0.1138411897103424
TQLLRQEL	8	Unmodified	_TQLLRQEL_					0	0	0			REV__ENST00000407924.2_1_6:27705341-27705923:-|nuORF	REV__ENST00000407924.2_1_6:27705341-27705923:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	500.1973876953125	2	500.792924	999.571294	-0.26556	-0.00013299	-0.28402	-0.00014223	-0.54957	-0.00027522	500.7928100125792	62.434	0.41084	62.434	62.249	62.66	0					13	7	3	0	0	0	0.90775	1	22545	22545		14.838	0	1	2188300	+		55275	24456	40233	40558	53943	53943					0.07149145334562945
TQLRLFHTRA	10	Unmodified	_TQLRLFHTRA_					0	0	0		KIF26B|p.P832L|1|0.45|ENSG00000162849|chr1:245685478-245685478|C/T|missense_variant	KIF26B|p.P832L|1|0.45|ENSG00000162849|chr1:245685478-245685478|C/T|missense_variant	KIF26B|p.P832L|1|0.45|ENSG00000162849|chr1:245685478-245685478|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	414.303466796875	3	414.907039	1241.69929	0.048011	1.992E-05	-1.5679	-0.00065054	-1.5199	-0.00063062	414.90635071594045	23.762	0.55833	23.762	23.533	24.092	0					15	10	2	0	0	0	0.87043	1	6594	6594		6.6235	3.9922	1	9236500			55276	14216	40234	40559	53944	53944					0.08810705648465955
TQLTQHDGSG	10	Unmodified	_TQLTQHDGSG_					0	0	0			REV__ENST00000390331.3_1_22:23264886-23265036:+|nuORF	REV__ENST00000390331.3_1_22:23264886-23265036:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	521.7001342773438	2	522.241252	1042.46795	-0.51159	-0.00026717	1.0722	0.00055994	0.56059	0.00029276	522.2417845359116	42.894	0.45622	43.666	43.369	43.826	0.7724					13	8	2	0	0	0	0.91773	1	16021	16021		7.1017	7.1017	1	2608600	+		55277	24260	40235	40560	53945	53945					-0.051583868439138314
TQLWIMLSDCL	11	Unmodified	_TQLWIMLSDCL_					0	0	0			REV__ENSG00000134709|ENST00000371208|HOOK1	REV__ENSG00000134709|ENST00000371208|HOOK1	MULTI-MSMS	A375_MHC_IP_R2	2	661.7765502929688	2	661.827792	1321.64103	-0.99385	-0.00065776	0.80744	0.00053439	-0.18641	-0.00012337	661.8284951505013	55.227	0.61083	55.978	55.626	56.237	0.75075					20	11	2	0	0	0	0.73318	1	20920	20920		7.1017	3.5052	1	2512100	+		55278	18794	40236	40561	53946	53946					-0.006924801033392214
TQMDQDEGTKY	11	Unmodified	_TQMDQDEGTKY_					0	0	0		ENSG00000136152|ENST00000349995|COG3;nc|ENSG00000136152|Q96JB2-2|COG3	ENSG00000136152|ENST00000349995|COG3	ENSG00000136152|ENST00000349995|COG3	MSMS	A375_MHC_IP_R1	1	658.1832275390625	2	658.277174	1314.5398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.62	1	43.62	43.12	44.12	0								0	0	0	0.15541	1	15174	15174		17.113	6.3134	1				55279	4758	40237	40562	53947	53947					-0.1048926027235666
TQNERTCTAK	10	Unmodified	_TQNERTCTAK_					0	0	0			REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	576.2432250976562	2	576.277312	1150.54007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.41	1	129.65	129.15	130.15	0.23946								0	0	0	0.15465	1	50858	50858		5.7319	0.83484	1		+		55280	15465	40238	40563	53948	53948					-0.029177957618458095
TQNMHCRRAK	10	Unmodified	_TQNMHCRRAK_					0	0	0			REV__POP1|p.R188Q|1|0.46|ENSG00000104356|chr8:98130054-98130054|G/A|missense_variant	REV__POP1|p.R188Q|1|0.46|ENSG00000104356|chr8:98130054-98130054|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	622.660888671875	2	622.80859	1243.60263	-0.24585	-0.00015312	3.7257	0.0023204	3.4798	0.0021673	623.3137243792856	42.866	0.25329	42.866	42.79	43.043	0					5	4	2	0	0	0	0.91057	1	14927	14927		7.609	0	1	1256900	+		55281	27821	40239	40564	53949	53949					-0.00942928174640656
TQPDLRSIN	9	Unmodified	_TQPDLRSIN_					0	0	0			REV__ENSG00000196090|ENST00000373187|PTPRT	REV__ENSG00000196090|ENST00000373187|PTPRT	MULTI-SECPEP	A375_MHC_IP_R2	2	521.7001342773438	2	522.277638	1042.54072	-0.51107	-0.00026692	1.4158	0.00073945	0.90475	0.00047253	522.2786945397927	42.856	0.40497	43.629	43.421	43.826	0.7724					11	7	2	0	0	0	0.63327	1	16021	16021		18.146	4.2403	1	1705400	+		55282	22156	40240	40565	53950	53950					0.021153669495333816
TQPFLEVTF	9	Unmodified	_TQPFLEVTF_					0	0	0		nc|ENSG00000138658|Q86YA3-6|ZGRF1;ENST00000514770.5_1_4:113532004-113549797:-|nuORF;nc|ENSG00000138658|Q86YA3-5|ZGRF1;ENST00000264370.9_1_4:113529030-113554332:-|nuORF;nc|ENSG00000138658|Q86YA3-4|ZGRF1;ENSG00000138658|ENST00000505019|ZGRF1;nc|ENSG00000138658|Q86YA3-3|ZGRF1	nc|ENSG00000138658|Q86YA3-6|ZGRF1	nc|ENSG00000138658|Q86YA3-6|ZGRF1	MULTI-SECPEP	A375_MHC_IP_R1	1	360.6048583984375	3	361.19033	1080.54916	-0.10567	-3.8167E-05	2.3059	0.00083289	2.2003	0.00079472	361.19037676650805	23.435	0.45938	23.435	23.278	23.737	0					20	8	4	0	0	0	0.55359	1	6399	6399		7.1017	0	1	2636200			55283	5018	40241	40566	53951	53951					0.012109208661286175
TQPKLRPRPRL	11	Unmodified	_TQPKLRPRPRL_					0	0	0			REV__ENSG00000170260|ENST00000335870|ZNF212	REV__ENSG00000170260|ENST00000335870|ZNF212	MSMS	A375_MHC_IP_R2	2	681.4808349609375	2	681.428045	1360.84154	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.303	1	49.06	48.56	49.56	0.75737								0	0	0	0.16337	1	18135	18135		1.1933	0.735	1		+		55284	20978	40242	40567	53952	53952					0.1755491839064689
TQPRFSHAC	9	Unmodified	_TQPRFSHAC_					0	0	0			REV__ENST00000426981.5_2_2:128396458-128396839:-|nuORF	REV__ENST00000426981.5_2_2:128396458-128396839:-|nuORF	MSMS	A375_MHC_IP_R2	2	523.7130126953125	2	523.74545	1045.47635	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.714	1	36.477	35.977	36.977	0.76338								0	0	0	0.14767	1	12966	12966		25.399	2.663	1		+		55285	24659	40243	40568	53953	53953					-0.044571114082600616
TQPSLETVL	9	Unmodified	_TQPSLETVL_					0	0	0		OR2C3|p.R21Q|1|0.33|ENSG00000196242|chr1:247532450-247532450|C/T|missense_variant	OR2C3|p.R21Q|1|0.33|ENSG00000196242|chr1:247532450-247532450|C/T|missense_variant	OR2C3|p.R21Q|1|0.33|ENSG00000196242|chr1:247532450-247532450|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	494.6710205078125	2	494.27149	986.528426	-0.62324	-0.00030805	-0.18367	-9.0781E-05	-0.80691	-0.00039883	494.27126677563706	41.497	0.35379	42.271	42.047	42.401	0.77451					13	6	3	0	0	0	0.65246	1	15435	15435		6.7232	0	1	3409200			55286	15070	40244	40569	53954	53954					0.034623304864680904
TQQHLWRPWKY	11	Unmodified	_TQQHLWRPWKY_					0	0	0			REV__ENSG00000136731|ENST00000259253|UGGT1	REV__ENSG00000136731|ENST00000259253|UGGT1	MSMS	A375_MHC_IP_R1	1	771.9022827148438	2	771.90186	1541.78917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.618	1	56.618	56.118	57.118	0								0	0	0	0.16334	1	20287	20287		1.3295	0	1		+		55287	18955	40245	40570	53955	53955					0.03994335257016246
TQQHSCHY	8	Unmodified	_TQQHSCHY_					0	0	0		ENSG00000070915|ENST00000563236|SLC12A3;nc|ENSG00000070915|P55017-3|SLC12A3;nc|ENSG00000070915|P55017-2|SLC12A3	ENSG00000070915|ENST00000563236|SLC12A3	ENSG00000070915|ENST00000563236|SLC12A3	MULTI-SECPEP	A375_MHC_IP_R1	1	502.60589599609375	2	502.206158	1002.39776	-0.33763	-0.00016956	-0.28052	-0.00014088	-0.61815	-0.00031044	502.20584790365075	33.887	0.50523	33.887	33.597	34.103	0					19	9	3	0	0	0	0.972	1	11097	11097		4.3292	0	1	3885100			55288	1503	40246	40571	53956	53956					-0.10333963713367211
TQQSFYLRY	9	Unmodified	_TQQSFYLRY_					0	0	0			REV__ENSG00000101986|ENST00000218104|ABCD1	REV__ENSG00000101986|ENST00000218104|ABCD1	MULTI-SECPEP	A375_MHC_IP_R2	2	603.7007446289062	2	603.301113	1204.58767	-0.68838	-0.0004153	-0.45664	-0.00027549	-1.145	-0.00069079	603.3009233176628	30.001	0.65993	30.7	30.485	31.145	0.69872					22	12	3	0	0	0	0.75164	1	10523	10523		13.906	6.2971	1	7683100	+		55289	17197	40247	40572	53957	53957					-0.006437734993596678
TQRCAVGVLW	10	Unmodified	_TQRCAVGVLW_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MULTI-SECPEP	A375_MHC_IP_R2	2	566.19482421875	2	566.800226	1131.5859	-0.74311	-0.00042119	-1.6484	-0.00093431	-2.3915	-0.0013555	567.3009124428363	58.755	0.55928	59.502	59.082	59.641	0.74714					18	10	3	0	0	0	0.8125	1	22220	22220		18.146	18.146	1	1840400	+		55290	16641	40248	40573	53958	53958					0.02536894211038998
TQRETVTF	8	Unmodified	_TQRETVTF_					0	0	0			REV__ENSG00000111644|ENST00000229243|ACRBP	REV__ENSG00000111644|ENST00000229243|ACRBP	MULTI-SECPEP	A375_MHC_IP_R2	2	491.1737976074219	2	491.253631	980.49271	-0.99361	-0.00048812	0.39404	0.00019357	-0.59957	-0.00029454	491.253800193226	37.274	0.35786	38.045	37.917	38.275	0.7709					9	6	2	0	0	0	0.86263	1	13589	13589		34.102	18.854	1	1176700	+		55291	17681	40249	40574	53959	53959					0.0016829302948053737
TQSIRKKNFFF	11	Unmodified	_TQSIRKKNFFF_					0	0	0			REV__tr|U7SZG7|U7SZG7_FUSNUDNAreplicationandrepairproteinRecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recFPE=3SV=1	REV__tr|U7SZG7|U7SZG7_FUSNUDNAreplicationandrepairproteinRecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recFPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	708.7924194335938	2	708.393336	1414.77212	-0.59506	-0.00042154	-2.989	-0.0021174	-3.584	-0.0025389	708.392875261999	96.074	0.9641	96.074	95.817	96.781	0					38	18	3	0	0	0	0.7039	1	35356	35356		15.248	7.6395	1	3241900	+		55292	28646	40250	40575	53960	53960					0.08132414651186082
TQSLKIAERY	10	Unmodified	_TQSLKIAERY_					0	0	0		ENST00000466114.1_1_1:77759479-77763674:+|nuORF;ENST00000317704.8_1_1:77747869-77779575:+|nuORF;nc|ENSG00000154027|Q9Y6K8-3|AK5;ENSG00000154027|ENST00000354567|AK5	ENST00000466114.1_1_1:77759479-77763674:+|nuORF	ENST00000466114.1_1_1:77759479-77763674:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	604.7371826171875	2	604.83532	1207.65609	-0.63687	-0.0003852	0.44676	0.00027021	-0.19011	-0.00011499	604.835633355	33.153	0.76356	33.906	33.483	34.247	0.75225					39	14	4	0	0	0	0.74754	1	11836	11836		29.082	8.667	1	19763000			55293	6054	40251	40576	53961	53961					0.06056471080501069
TQSLKIAERY	10	Unmodified	_TQSLKIAERY_					0	0	0		ENST00000466114.1_1_1:77759479-77763674:+|nuORF;ENST00000317704.8_1_1:77747869-77779575:+|nuORF;nc|ENSG00000154027|Q9Y6K8-3|AK5;ENSG00000154027|ENST00000354567|AK5	ENST00000466114.1_1_1:77759479-77763674:+|nuORF	ENST00000466114.1_1_1:77759479-77763674:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	605.2347412109375	2	604.83532	1207.65609	-0.73084	-0.00044204	0.21557	0.00013038	-0.51527	-0.00031166	604.8354467586856	49.544	0.45546	50.302	50.096	50.551	0.75737					16	8	2	0	0	0	0.87043	1	18642	18642		7.1017	0	1	3640300			55294	6054	40251	40576	53962	53962					0.06056471080501069
TQSPVSSEE	9	Unmodified	_TQSPVSSEE_					0	0	0		ENSG00000130224|ENST00000317135|LRCH2	ENSG00000130224|ENST00000317135|LRCH2	ENSG00000130224|ENST00000317135|LRCH2	MSMS	A375_MHC_IP_R2	2	482.17352294921875	2	482.216911	962.41927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.056	1	45.826	45.326	46.326	0.7691								0	0	0	0.15486	1	16834	16834		10.824	0	1				55295	4229	40252	40577	53963	53963					-0.06344300203659259
TQSQERGMVLG	11	Unmodified	_TQSQERGMVLG_					0	0	0			REV__ENST00000381630.2_1_20:1457797-1472026:-|nuORF	REV__ENST00000381630.2_1_20:1457797-1472026:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	603.7002563476562	2	603.300787	1204.58702	-0.61246	-0.0003695	0.028436	1.7155E-05	-0.58403	-0.00035234	603.3009209513128	30.788	0.55669	30.788	30.603	31.16	0					24	10	3	0	0	0	0.9881	1	9819	9819		13.615	7.4091	1	8385600	+		55296	24237	40253	40578	53964	53964					-0.007089362106853514
TQSRTTNGP	9	Unmodified	_TQSRTTNGP_					0	0	0		ENST00000454219.1_1_1:100434901-100435171:-|nuORF	ENST00000454219.1_1_1:100434901-100435171:-|nuORF	ENST00000454219.1_1_1:100434901-100435171:-|nuORF	MSMS	A375_MHC_IP_R2	2	481.1622009277344	2	481.238513	960.462472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.032	1	41.806	41.306	42.306	0.77451								0	0	0	0.14767	1	15214	15214		25.399	0	1				55297	12108	40254	40579	53965	53965					-0.019340656357258013
TQSRYSVR	8	Unmodified	_TQSRYSVR_					0	0	0			REV__nc|ENSG00000115306|Q01082-2|SPTBN1	REV__nc|ENSG00000115306|Q01082-2|SPTBN1	MSMS	A375_MHC_IP_R2	2	498.65716552734375	2	498.764697	995.514842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.773	1	62.516	62.016	63.016	0.74263								0	0	0	0.16876	1	23414	23414		18.135	2.2878	1		+		55298	27186	40255	40580	53966	53966					0.01690517497900146
TQTKELADK	9	Unmodified	_TQTKELADK_					0	0	0			REV__ENSG00000179941|ENST00000650064|BBS10	REV__ENSG00000179941|ENST00000650064|BBS10	MULTI-MSMS	A375_MHC_IP_R1	1	516.6847534179688	2	517.279846	1032.54514	-0.45838	-0.00023711	0.38517	0.00019924	-0.073217	-3.7874E-05	517.2799599483338	62.12	0.7178	62.12	61.839	62.557	0					19	13	2	0	0	0	0.61998	1	22337	22337		13.906	0	1	2747500	+		55299	21590	40256	40581	53967	53967					0.030168313724288964
TQTKLQLPL	9	Unmodified	_TQTKLQLPL_					0	0	0			REV__ENST00000464213.1_1_7:80300351-80300459:+|nuORF	REV__ENST00000464213.1_1_7:80300351-80300459:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	520.6319580078125	2	521.318774	1040.623	-0.77388	-0.00040344	0.34652	0.00018065	-0.42736	-0.00022279	521.3185884049578	39.199	0.20435	39.974	39.812	40.016	0.77451					5	3	2	0	0	0	0.75164	1	14453	14453		9.3831	1.2276	1	982540	+		55300	25009	40257	40582	53968	53968					0.10430889028475576
TQTLESKAF	9	Unmodified	_TQTLESKAF_					0	0	0		nc|ENSG00000163808|Q9NS87-3|KIF15;nc|ENSG00000163808|Q9NS87-2|KIF15;ENSG00000163808|ENST00000326047|KIF15	nc|ENSG00000163808|Q9NS87-3|KIF15	nc|ENSG00000163808|Q9NS87-3|KIF15	MULTI-SECPEP	A375_MHC_IP_R1	1	513.1688232421875	2	512.769114	1023.52368	-0.51455	-0.00026384	-0.6347	-0.00032546	-1.1492	-0.0005893	512.7690741026842	34.173	0.4034	34.173	33.95	34.353	0					19	7	3	0	0	0	0.50702	1	11277	11277		25.399	3.8623	1	3236900			55301	6725	40258	40583	53969	53969					0.012854463437065533
TQTPLRNLP	9	Unmodified	_TQTPLRNLP_					0	0	0		ENSG00000143512|ENST00000343410|HHIPL2;HHIPL2|p.E120K|1|0.45|ENSG00000143512|chr1:222544153-222544153|C/T|missense_variant	ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	MULTI-SECPEP	A375_MHC_IP_R1	1	520.6981201171875	2	520.298373	1038.58219	-0.64936	-0.00033786	0.18352	9.5484E-05	-0.46584	-0.00024237	520.2984118867887	40.007	0.40882	40.007	39.794	40.203	0					13	7	2	0	0	0	0.69507	1	13735	13735		19.257	0	1	5088200			55302	5402	40259	40584	53970	53970					0.06444547708861137
TQTQLRPTPPC	11	Unmodified	_TQTQLRPTPPC_					0	0	0			REV__chr11:89289617-89295143|388|252.77|0.08|11.58|+|0|None,TYR|1	REV__chr11:89289617-89295143|388|252.77|0.08|11.58|+|0|None,TYR|1	MULTI-SECPEP	A375_MHC_IP_R1	1	414.6308288574219	3	414.548412	1240.62341	0.027536	1.1415E-05	-0.068251	-2.8293E-05	-0.040714	-1.6878E-05	414.88337340431724	26.069	0.20366	26.069	25.966	26.17	0					5	3	2	0	0	0	0.98663	1	7668	7668		8.7518	0.30748	1	593200	+		55303	15682	40260	40585	53971	53971					0.012719406860242088
TQTREVQYL	9	Unmodified	_TQTREVQYL_					0	0	0			REV__ACOT8|p.R102Q|1|0.22|ENSG00000101473|chr20:45848633-45848633|C/T|missense_variant	REV__ACOT8|p.R102Q|1|0.22|ENSG00000101473|chr20:45848633-45848633|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	568.721435546875	2	569.29857	1136.58259	-0.44442	-0.00025301	0.34553	0.00019671	-0.098894	-5.63E-05	569.2988808126305	33.078	0.15041	33.078	32.989	33.14	0					4	2	2	0	0	0	0.13064	1	10724	10724		56.177	16.227	1	1987900	+		55304	15297	40261	40586	53972	53972					0.01975922638052907
TQTTGFTF	8	Unmodified	_TQTTGFTF_					0	0	0		ENSG00000213024|ENST00000352066|NUP62	ENSG00000213024|ENST00000352066|NUP62	ENSG00000213024|ENST00000352066|NUP62	MULTI-MSMS	A375_MHC_IP_R1	1	452.1163330078125	2	451.71635	901.418148	-0.20079	-9.0699E-05	0.77363	0.00034946	0.57284	0.00025876	451.71631852638114	34.636	0.35366	34.636	34.456	34.81	0					15	6	4	0	0	0	0.68964	1	11445	11445		37.974	3.8716	1	4735400			55305	9554	40262	40587	53973	53973					-0.036504697819054854
TQTYTREY	8	Unmodified	_TQTYTREY_					0	0	0		nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN	nc|ENSG00000130396|P55196-2|AFDN	nc|ENSG00000130396|P55196-2|AFDN	MSMS	A375_MHC_IP_R1	1	531.1558227539062	2	531.248546	1060.48254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.84	1	28.84	28.34	29.34	0								0	0	0	0.16876	1	8948	8948		19.257	0	1				55306	4241	40263	40588	53974	53974					-0.04528314695744484
TQVADPPPGY	10	Unmodified	_TQVADPPPGY_					0	0	0			REV__ENSG00000117222|ENST00000264515|RBBP5	REV__ENSG00000117222|ENST00000264515|RBBP5	MULTI-SECPEP	A375_MHC_IP_R1	1	523.153076171875	2	522.753464	1043.49238	-0.75349	-0.00039389	0.90167	0.00047135	0.14818	7.7462E-05	522.7538166641357	36.735	0.60692	36.735	36.489	37.096	0					15	11	2	0	0	0	0.61429	1	12332	12332		24.021	3.5669	1	4338100	+		55307	17998	40264	40589	53975	53975					-0.027631266903881624
TQVADPPPGY	10	Unmodified	_TQVADPPPGY_					0	0	0			REV__ENSG00000117222|ENST00000264515|RBBP5	REV__ENSG00000117222|ENST00000264515|RBBP5	MULTI-SECPEP	A375_MHC_IP_R2	2	522.9796142578125	2	522.753464	1043.49238	-0.71061	-0.00037147	0.63768	0.00033335	-0.072933	-3.8126E-05	522.7536504422507	36.059	0.6636	36.823	36.436	37.1	0.76421					20	12	2	0	0	0	0.72086	1	13017	13017		18.146	4.6385	1	4308500	+		55308	17998	40264	40589	53976	53976					-0.027631266903881624
TQVAKKKMML	10	Unmodified	_TQVAKKKMML_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	A375_MHC_IP_R2	2	1178.0780029296875	1	1177.67955	1176.67227	0.11617	0.00013682	-0.61462	-0.00072383	-0.49845	-0.00058701	1177.6784679065775	128.83	1.1634	129.07	128.65	129.82	0.23946					38	22	2	0	0	0	0.71944	1	50599	50599		3.5965	0.60125	1	14949000			55309	3005	40265	40590	53977	53977					0.09100137721407009
TQVEVDENAY	10	Unmodified	_TQVEVDENAY_					0	0	0		nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1	nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	MULTI-MSMS	A375_MHC_IP_R2	2	584.1880493164062	2	584.26185	1166.50915	-0.35738	-0.0002088	0.31266	0.00018267	-0.044723	-2.613E-05	584.2622352362674	79.176	0.86137	79.921	79.54	80.401	0.74474					43	16	4	0	0	0	0.52785	1	29964	29964		26.268	3.5319	1	20767000			55310	14772;7834	40266	40591	53978	53978					-0.06744670595094249
TQVTNISETV	10	Unmodified	_TQVTNISETV_					0	0	0			REV__ENSG00000169155|ENST00000373464|ZBTB43	REV__ENSG00000169155|ENST00000373464|ZBTB43	MULTI-MSMS	A375_MHC_IP_R2	2	546.68212890625	2	546.282586	1090.55062	-1.0438	-0.00057018	0.52933	0.00028916	-0.51442	-0.00028102	546.282942292902	23.895	0.307	24.526	24.384	24.691	0.63015					11	5	3	0	0	0	0.2347	1	7791	7791		45.7	3.86	1	5280300	+		55311	20911	40267	40592	53979	53979					0.008965101642388618
TQVTTQPKL	9	Unmodified	_TQVTTQPKL_					0	0	0		nc|ENSG00000111880|O60942-3|RNGTT;nc|ENSG00000111880|O60942-2|RNGTT;nc|ENSG00000111880|O60942-4|RNGTT;ENSG00000111880|ENST00000369485|RNGTT;RNGTT|p.E252G|1|0.07|ENSG00000111880|chr6:88891845-88891845|T/C|missense_variant	nc|ENSG00000111880|O60942-3|RNGTT	nc|ENSG00000111880|O60942-3|RNGTT	MULTI-SECPEP	A375_MHC_IP_R2	2	508.1350402832031	2	508.292756	1014.57096	-0.79515	-0.00040417	0.51594	0.00026225	-0.27921	-0.00014192	508.29291657358823	32.534	0.61013	33.271	33.061	33.671	0.73692					18	11	2	0	0	0	0.71341	1	11633	11633		8.7454	2.0222	1	2563600			55312	14546	40268	40593	53980	53980					0.06425725614712974
TQVWGVCVCV	10	Unmodified	_TQVWGVCVCV_					0	0	0		ENST00000558057.1_1_15:40400417-40401058:-|nuORF	ENST00000558057.1_1_15:40400417-40401058:-|nuORF	ENST00000558057.1_1_15:40400417-40401058:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	547.6611328125	2	547.262087	1092.50962	-0.95267	-0.00052136	-0.42201	-0.00023095	-1.3747	-0.00075231	547.7635251063165	35.838	0.50905	36.602	36.333	36.842	0.76338					22	9	3	0	0	0	0.48529	1	13023	13023		29.082	2.8134	1	3477100			55313	13460	40269	40594	53981	53981					-0.03293245680583823
TQVYHERAD	9	Unmodified	_TQVYHERAD_					0	0	0		ENSG00000179292|ENST00000327259|TMEM151A	ENSG00000179292|ENST00000327259|TMEM151A	ENSG00000179292|ENST00000327259|TMEM151A	MSMS	A375_MHC_IP_R1	1	559.6851196289062	2	559.764894	1117.51524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.43	1	31.43	30.93	31.93	0								0	0	0	0.1493	1	10065	10065		22.736	3.4793	1				55314	8218	40270	40595	53982	53982					-0.03882107572917448
TQWAWDERTAS	11	Unmodified	_TQWAWDERTAS_					0	0	0			REV__ENSG00000146700|ENST00000275560|SSC4D	REV__ENSG00000146700|ENST00000275560|SSC4D	MULTI-MSMS	A375_MHC_IP_R1	1	451.1666564941406	3	450.873953	1349.60003	-0.3354	-0.00015123	-0.75341	-0.00033969	-1.0888	-0.00049092	451.20806184694817	36.92	0.50411	36.92	36.644	37.148	0					14	9	2	0	0	0	0.73679	1	12376	12376		2.4348	0.52841	1	3755100	+		55315	19547	40271	40596	53983	53983					-0.060787818269545824
TQWAWDERTAS	11	Unmodified	_TQWAWDERTAS_					0	0	0			REV__ENSG00000146700|ENST00000275560|SSC4D	REV__ENSG00000146700|ENST00000275560|SSC4D	MULTI-SECPEP	A375_MHC_IP_R1	1	450.1351623535156	3	450.873953	1349.60003	-0.18717	-8.4392E-05	0.97353	0.00043894	0.78635	0.00035455	450.8740014176529	46.388	0.19928	46.388	46.245	46.444	0					5	3	2	0	0	0	0.99916	1	16256	16256		1.1098	0	1	467960	+		55316	19547	40271	40596	53984	53984					-0.060787818269545824
TQWVRAQL	8	Unmodified	_TQWVRAQL_					0	0	0			REV__nc|ENSG00000110148|P32239-3|CCKBR	REV__nc|ENSG00000110148|P32239-3|CCKBR	MULTI-SECPEP	A375_MHC_IP_R2	2	500.6764831542969	2	501.279983	1000.54541	-0.7459	-0.00037391	1.0564	0.00052957	0.31053	0.00015566	501.7824151159159	35.889	0.91615	36.652	36.081	36.997	0.76338					31	17	3	0	0	0	0.91495	1	13050	13050		18.135	0	1	4939100	+		55317	17619	40272	40597	53985	53985					0.04516295882945087
TQYLLDQSFV	10	Unmodified	_TQYLLDQSFV_					0	0	0		ENSG00000058335|ENST00000558480|RASGRF1;nc|ENSG00000058335|Q13972|RASGRF1;nc|ENSG00000058335|Q13972-2|RASGRF1	ENSG00000058335|ENST00000558480|RASGRF1	ENSG00000058335|ENST00000558480|RASGRF1	MULTI-SECPEP	A375_MHC_IP_R1	1	607.6780395507812	2	607.308603	1212.60265	-0.17993	-0.00010927	-0.20183	-0.00012257	-0.38176	-0.00023185	607.3088967484106	82.628	0.40625	82.628	82.316	82.722	0					10	7	2	0	0	0	0.74754	1	30150	30150		17.113	0	1	1283100			55318	1292	40273	40598	53986	53986					0.004856735779867449
TRADLIFTV	9	Unmodified	_TRADLIFTV_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R1	1	518.696044921875	2	518.295299	1034.57605	-0.59271	-0.0003072	0.14066	7.2904E-05	-0.45205	-0.0002343	518.2953623575654	89.799	1.5218	89.799	89.323	90.845	0					85	29	5	0	0	0	0.22013	2	32902	32902;33178		36.506	4.2007	1	47611000			55319	9114	40274	40599	53987;53988	53987					0.060140294773418645
TRADLIFTV	9	Unmodified	_TRADLIFTV_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R2	2	518.8085327148438	2	518.295299	1034.57605	-0.63555	-0.0003294	-0.18009	-9.3341E-05	-0.81564	-0.00042274	518.295178468303	88.827	1.8248	89.559	89.128	90.953	0.7318					95	35	4	0	0	0	0.06083	2	33805	33805;33959		60.074	16.216	1	47894000			55320	9114	40274	40599	53989;53990	53989					0.060140294773418645
TRADLIFTV	9	Unmodified	_TRADLIFTV_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	518.295299	1034.57605	-0.59271	-0.0003072	0.14066	7.2904E-05	-0.45205	-0.0002343	518.2953623575654	89.799	1.5218	89.799	89.323	90.845	0	0.12023	0.00016377	NaN	60.074	85	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47611000			55321	9114	40274	40599							0.060140294773418645
TRADLRKLY	9	Unmodified	_TRADLRKLY_					0	0	0		ENSG00000134504|ENST00000580059|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	MULTI-SECPEP	A375_MHC_IP_R2	2	379.6241149902344	3	379.224257	1134.65094	0.13942	5.2871E-05	-0.71439	-0.00027091	-0.57497	-0.00021804	379.2240576594362	27.297	0.35732	27.975	27.792	28.149	0.67857					15	6	3	0	0	0	0.76305	1	9343	9343		14.218	5.2419	1	3544300			55322	4581	40275	40600	53991	53991					0.08900212008575181
TRAEMILKV	9	Unmodified	_TRAEMILKV_					0	0	0		ENSG00000141252|ENST00000437048|VPS53;ENST00000541903.6_1_17:422370-426182:-|nuORF	ENSG00000141252|ENST00000437048|VPS53	ENSG00000141252|ENST00000437048|VPS53	MULTI-MSMS	A375_MHC_IP_R1	1	354.2656555175781	3	354.21096	1059.61105	0.15258	5.4046E-05	-0.33709	-0.0001194	-0.18451	-6.5355E-05	354.2108210778702	47.895	0.60557	47.895	47.567	48.173	0					24	11	3	0	0	0	0.57432	1	16825	16825		11.518	3.0736	1	8913500			55323	5222	40276	40601	53992	53992					0.08362949013644538
TRAEMILKV	9	Unmodified	_TRAEMILKV_					0	0	0		ENSG00000141252|ENST00000437048|VPS53;ENST00000541903.6_1_17:422370-426182:-|nuORF	ENSG00000141252|ENST00000437048|VPS53	ENSG00000141252|ENST00000437048|VPS53	MULTI-SECPEP	A375_MHC_IP_R2	2	354.6109619140625	3	354.21096	1059.61105	-0.025312	-8.9658E-06	-0.046405	-1.6437E-05	-0.071717	-2.5403E-05	354.2109372536036	46.882	0.60992	47.643	47.361	47.97	0.76128					22	11	3	0	0	0	0.33896	1	17559	17559		37.771	13.97	1	10528000			55324	5222	40276	40601	53993	53993					0.08362949013644538
TRAEMILKV	9	Oxidation (M)	_TRAEM(Oxidation (M))ILKV_		TRAEM(1)ILKV		TRAEM(48)ILKV	0	0	1		ENSG00000141252|ENST00000437048|VPS53;ENST00000541903.6_1_17:422370-426182:-|nuORF	ENSG00000141252|ENST00000437048|VPS53	ENSG00000141252|ENST00000437048|VPS53	MULTI-MSMS	A375_MHC_IP_R2	2	359.94219970703125	3	359.542598	1075.60597	-0.39566	-0.00014226	-0.038962	-1.4009E-05	-0.43463	-0.00015627	359.5425303939814	35.663	0.91297	36.427	35.929	36.842	0.76338					47	17	4	0	0	0	0.11448	1	12962	12962		48.073	24.272	1	15121000			55325	5222	40276	40602	53994	53994		280			0.07118645151035707
TRAEMILKV	9	Oxidation (M)	_TRAEM(Oxidation (M))ILKV_		TRAEM(1)ILKV		TRAEM(43)ILKV	0	0	1		ENSG00000141252|ENST00000437048|VPS53;ENST00000541903.6_1_17:422370-426182:-|nuORF	ENSG00000141252|ENST00000437048|VPS53	ENSG00000141252|ENST00000437048|VPS53	MULTI-MSMS	A375_MHC_IP_R2	2	359.9423828125	3	359.542598	1075.60597	-0.55487	-0.0001995	0.12021	4.3222E-05	-0.43465	-0.00015628	359.5426144343322	36.461	1.8338	37.232	36.85	38.684	0.7709					58	35	3	0	0	0	0.14368	1	13276	13276		42.835	22.848	1	12532000			55326	5222	40276	40602	53995	53995		280			0.07118645151035707
TRAKRPKKL	9	Unmodified	_TRAKRPKKL_					0	0	0			REV__ENSG00000125492|ENST00000263610|BARHL1	REV__ENSG00000125492|ENST00000263610|BARHL1	MSMS	A375_MHC_IP_R1	1	366.60418701171875	3	366.580375	1096.7193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.71	1	35.71	35.21	36.21	0								0	0	0	0.15486	1	11899	11899		8.9762	1.3673	1		+		55327	18345	40277	40603	53996	53996					0.17480501379077396
TRAPRVKWV	9	Unmodified	_TRAPRVKWV_					0	0	0		ENSG00000172270|ENST00000333511|BSG	ENSG00000172270|ENST00000333511|BSG	ENSG00000172270|ENST00000333511|BSG	MULTI-MSMS	A375_MHC_IP_R1	1	371.9610290527344	3	371.561092	1111.66145	0.31019	0.00011525	-0.54734	-0.00020337	-0.23715	-8.8115E-05	371.560978760895	28.364	1.0103	28.364	28.088	29.098	0					30	19	3	0	0	0	0.46357	1	8742	8742		21.59	7.9753	1	11875000			55328	7697	40278	40604	53997	53997					0.11008239453644819
TRAPRVKWV	9	Unmodified	_TRAPRVKWV_					0	0	0		ENSG00000172270|ENST00000333511|BSG	ENSG00000172270|ENST00000333511|BSG	ENSG00000172270|ENST00000333511|BSG	MULTI-MSMS	A375_MHC_IP_R2	2	371.9611511230469	3	371.561092	1111.66145	0.4803	0.00017846	-0.45354	-0.00016852	0.026753	9.9402E-06	371.5608823483989	27.549	0.8116	28.228	27.945	28.757	0.67857					31	15	4	0	0	0	0.3489	1	9412	9412		27.223	9.7806	1	11578000			55329	7697	40278	40604	53998	53998					0.11008239453644819
TRARLVFRV	9	Unmodified	_TRARLVFRV_					0	0	0		nc|ENSG00000102908|O94916|NFAT5;nc|ENSG00000102908|O94916-4|NFAT5;ENSG00000102908|ENST00000349945|NFAT5;nc|ENSG00000102908|O94916-2|NFAT5	nc|ENSG00000102908|O94916|NFAT5	nc|ENSG00000102908|O94916|NFAT5	MULTI-SECPEP	A375_MHC_IP_R1	1	373.63665771484375	3	373.236608	1116.688	0.53933	0.0002013	0.053618	2.0012E-05	0.59295	0.00022131	373.23657536085824	38.733	0.66159	38.733	38.423	39.085	0					30	12	3	0	0	0	0.76106	1	13129	13129		13.615	3.4643	1	11325000			55330	2401	40279	40605	53999	53999					0.13431928344994049
TRATAAGGTRL	11	Unmodified	_TRATAAGGTRL_					0	0	0			REV__ENST00000409470.5_2_2:85843553-85850780:+|nuORF	REV__ENST00000409470.5_2_2:85843553-85850780:+|nuORF	MSMS	A375_MHC_IP_R1	1	358.9257507324219	3	358.871995	1073.59415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.456	1	30.456	29.956	30.956	0								0	0	0	0.16124	1	9681	9681		6.6235	0	1		+		55331	24468	40280	40606	54000	54000					0.06030164452045028
TRDFSVQIK	9	Unmodified	_TRDFSVQIK_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000483086.1_1_2:242174984-242179130:-|nuORF;ENST00000479169.5_1_2:242177863-242181895:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	A375_MHC_IP_R2	2	548.7467041015625	2	547.303655	1092.59276	-1.6602	-0.00090862	0.35024	0.00019169	-1.3099	-0.00071693	547.3038121628807	29.156	0.70333	29.855	29.681	30.385	0.69872					41	13	4	0	0	0	0.4867	1	10103	10103		20.454	1.1966	1	114440000			55332	3330	40281	40607	54001	54001					0.050165303632638825
TRDIFKTKF	9	Unmodified	_TRDIFKTKF_					0	0	0		ENSG00000160883|ENST00000292432|HK3	ENSG00000160883|ENST00000292432|HK3	ENSG00000160883|ENST00000292432|HK3	MULTI-MSMS	A375_MHC_IP_R2	2	386.28045654296875	3	385.888874	1154.64479	-0.16603	-6.4069E-05	0.14893	5.747E-05	-0.0171	-6.5985E-06	385.8889648434324	39.673	1.5743	40.448	40.118	41.692	0.77451					82	30	5	0	0	0	0.65748	1	14961	14961		10.8	0.64894	1	380770000			55333	6448	40282	40608	54002	54002					0.07365693777023807
TRDKVRAKGL	10	Unmodified	_TRDKVRAKGL_					0	0	0		ENSG00000008086|ENST00000623535|CDKL5;nc|ENSG00000008086|O76039-1|CDKL5	ENSG00000008086|ENST00000623535|CDKL5	ENSG00000008086|ENST00000623535|CDKL5	MSMS	A375_MHC_IP_R2	2	381.968017578125	3	381.903406	1142.68839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.888	1	29.586	29.086	30.086	0.69872								0	0	0	0.15324	1	10033	10033		10.315	0.16466	1				55334	951	40283	40609	54003	54003					0.12275303274191174
TRDTSLKGFY	10	Unmodified	_TRDTSLKGFY_					0	0	0		nc|ENSG00000140465|P04798-3|CYP1A1;ENSG00000140465|ENST00000379727|CYP1A1	nc|ENSG00000140465|P04798-3|CYP1A1	nc|ENSG00000140465|P04798-3|CYP1A1	MULTI-MSMS	A375_MHC_IP_R2	2	594.7055053710938	2	594.306395	1186.59824	-0.94774	-0.00056325	-1.7361	-0.0010318	-2.6839	-0.001595	594.3053166237236	57.166	0.56087	57.916	57.712	58.273	0.75014					22	10	4	0	0	0	0.71245	1	21659	21659		6.7232	0	1	2445200			55335	5156	40284	40610	54004	54004					0.012402091550939076
TRDTSLKGFY	10	Unmodified	_TRDTSLKGFY_					0	0	0		nc|ENSG00000140465|P04798-3|CYP1A1;ENSG00000140465|ENST00000379727|CYP1A1	nc|ENSG00000140465|P04798-3|CYP1A1	nc|ENSG00000140465|P04798-3|CYP1A1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	594.306395	1186.59824	-0.38955	-0.00023151	-1.8459	-0.001097	-2.2355	-0.0013286	594.3052038162842	57.746	0.40569	57.746	57.618	58.024	0	-0.085021	-1.2336E-05	NaN	6.7232	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2201700			55336	5156	40284	40610							0.012402091550939076
TREARKEYL	9	Unmodified	_TREARKEYL_					0	0	0		ENSG00000128311|ENST00000249042|TST	ENSG00000128311|ENST00000249042|TST	ENSG00000128311|ENST00000249042|TST	MULTI-MSMS	A375_MHC_IP_R1	1	389.59271240234375	3	389.21565	1164.62512	0.15785	6.1436E-05	0.3983	0.00015503	0.55615	0.00021646	389.2159711382078	19.994	0.6597	19.994	19.521	20.18	0					18	12	2	0	0	0	0.73141	1	4968	4968		4.1895	0.24511	1	1699900			55337	4132	40285	40611	54005	54005					0.049393177662977905
TREKIKQPV	9	Unmodified	_TREKIKQPV_					0	0	0		ENST00000240316.4_1_17:55027977-55028133:-|nuORF	ENST00000240316.4_1_17:55027977-55028133:-|nuORF	ENST00000240316.4_1_17:55027977-55028133:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	550.2346801757812	2	549.835123	1097.65569	-0.59275	-0.00032591	-0.36853	-0.00020263	-0.96127	-0.00052854	549.8347916802182	145.24	0.47964	145.26	144.98	145.46	0.021408					33	27	2	0	0	0	0.8028	1	56716	56716		4.3292	0.38484	1	304040			55338	10169	40286	40612	54006	54006					0.1107709615132535
TRERWKRRRRR	11	Unmodified	_TRERWKRRRRR_					0	0	0		ENST00000326402.8_2_11:92930946-92931072:-|nuORF	ENST00000326402.8_2_11:92930946-92931072:-|nuORF	ENST00000326402.8_2_11:92930946-92931072:-|nuORF	MSMS	A375_MHC_IP_R1	1	828.5886840820312	2	828.498721	1654.98289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.47	1	114.47	113.97	114.97	0								0	0	0	0.1636	1	41981	41981		0	0	1				55339	10731	40287	40613	54007	54007					0.18159729536455416
TRFFCCCSC	9	Unmodified	_TRFFCCCSC_					0	0	0		ENST00000464356.6_2_1:156435963-156436056:-|nuORF	ENST00000464356.6_2_1:156435963-156436056:-|nuORF	ENST00000464356.6_2_1:156435963-156436056:-|nuORF	MSMS	A375_MHC_IP_R2	2	535.16748046875	2	535.189751	1068.36495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.674	1	99.434	98.934	99.934	0.75977								0	0	0	0.15486	1	37432	37432		4.3292	1.44	1				55340	12223	40288	40614	54008	54008					-0.16649953423734587
TRFIQRLR	8	Unmodified	_TRFIQRLR_					0	0	0		CON__Q9R0H5	CON__Q9R0H5	CON__Q9R0H5	MULTI-SECPEP	A375_MHC_IP_R1	1	545.7344360351562	2	545.335624	1088.6567	-0.86434	-0.00047135	-0.65041	-0.00035469	-1.5148	-0.00082605	545.3351211696428	137.82	1.172	137.82	137.64	138.81	0					56	22	3	0	0	0	0.972	1	53019	53019		2.3027	0	1	25942000		+	55341	635	40289	40615	54009	54009					0.11591355310861218
TRFIQRLR	8	Unmodified	_TRFIQRLR_					0	0	0		CON__Q9R0H5	CON__Q9R0H5	CON__Q9R0H5	MULTI-MATCH	A375_MHC_IP_R2	2		2	545.335624	1088.6567	-0.61134	-0.00033339	-0.97598	-0.00053224	-1.5873	-0.00086562	545.3349599255135	137.75	1.8656	137.83	137.66	139.52	0.083969	0.0080712	-0.00015022	NaN	2.3027	70	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27480000		+	55342	635	40289	40615							0.11591355310861218
TRFKRFAPD	9	Unmodified	_TRFKRFAPD_					0	0	0			REV__ENSG00000119737|ENST00000394705|GPR75	REV__ENSG00000119737|ENST00000394705|GPR75	MULTI-MSMS	A375_MHC_IP_R1	1	379.9239807128906	3	379.876969	1136.60908	0.091138	3.4621E-05	-1.0967	-0.0004166	-1.0055	-0.00038198	379.87648780797576	26.968	0.40099	26.968	26.677	27.078	0					12	7	2	0	0	0	0.72761	1	8033	8033		4.5289	0.33936	1	2186500	+		55343	18094	40290	40616	54010	54010					0.046236563200409364
TRFTSIVRL	9	Unmodified	_TRFTSIVRL_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-SECPEP	A375_MHC_IP_R2	2	365.28875732421875	3	364.888986	1091.64513	-0.29626	-0.0001081	0.10149	3.7032E-05	-0.19477	-7.1069E-05	364.8890807033009	60.338	0.51125	61.083	60.853	61.364	0.74503					16	9	2	0	0	0	0.40377	1	22861	22861		27.088	16.189	1	2793300			55344	8815	40291	40617	54011	54011					0.10297113496903876
TRFTSIVRL	9	Unmodified	_TRFTSIVRL_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MATCH	A375_MHC_IP_R1	1		3	364.888986	1091.64513	0.18327	6.6873E-05	0.058194	2.1234E-05	0.24146	8.8107E-05	364.8889857698069	61.442	0.30727	61.442	61.227	61.534	0	0.17932	-2.2996E-05	NaN	27.088	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1760600			55345	8815	40291	40617							0.10297113496903876
TRFWRRRLRRP	11	Unmodified	_TRFWRRRLRRP_					0	0	0			REV__ENST00000574110.5_1_19:30433210-30433438:+|nuORF	REV__ENST00000574110.5_1_19:30433210-30433438:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	533.9700317382812	3	533.990431	1598.94946	-0.849	-0.00045336	0.82014	0.00043795	-0.028857	-1.5409E-05	533.99102094222	39.419	0.35545	40.194	39.914	40.269	0.77451					11	6	3	0	0	0	0.73934	1	14482	14482		0	0	1	2406700	+		55346	26298	40292	40618	54012	54012					0.173947277645766
TRFWRRRLRRP	11	Unmodified	_TRFWRRRLRRP_					0	0	0			REV__ENST00000574110.5_1_19:30433210-30433438:+|nuORF	REV__ENST00000574110.5_1_19:30433210-30433438:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	401.1449279785156	4	400.744642	1598.94946	-0.11177	-4.4792E-05	0.6709	0.00026886	0.55913	0.00022407	400.74491730671156	39.419	0.50779	40.194	39.863	40.371	0.77451					20	9	3	0	0	0	1.0015	1	14567	14567		0.08335	0.08335	1	5845300	+		55347	26298	40292	40618	54013	54013					0.173947277645766
TRFWRRRLRRP	11	Unmodified	_TRFWRRRLRRP_					0	0	0			REV__ENST00000574110.5_1_19:30433210-30433438:+|nuORF	REV__ENST00000574110.5_1_19:30433210-30433438:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		4	400.744642	1598.94946	-0.31088	-0.00012458	1.1681	0.00046812	0.85725	0.00034354	400.7451897848355	40.253	0.51023	40.253	39.948	40.458	0	0.029428	0.00045044	NaN	0.08335	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4130100	+		55348	26298	40292	40618							0.173947277645766
TRGKGGKC	8	Unmodified	_TRGKGGKC_					0	0	0			REV__nc|ENSG00000132958|Q6XPS3-4|TPTE2	REV__nc|ENSG00000132958|Q6XPS3-4|TPTE2	MULTI-SECPEP	A375_MHC_IP_R1	1	806.9097900390625	1	806.430132	805.422856	-0.763	-0.00061531	1.59	0.0012822	0.82701	0.00066693	806.4309979253895	143.86	0.25206	143.86	143.68	143.94	0					5	4	2	0	0	0	0.972	1	55159	55159		0	0	1	1025600	+		55349	18695	40293	40619	54014	54014					0.01236135879878475
TRGKGGKC	8	Unmodified	_TRGKGGKC_					0	0	0			REV__nc|ENSG00000132958|Q6XPS3-4|TPTE2	REV__nc|ENSG00000132958|Q6XPS3-4|TPTE2	MULTI-MSMS	A375_MHC_IP_R2	2	807.3705444335938	1	806.430132	805.422856	-0.69938	-0.000564	2.6607	0.0021456	1.9613	0.0015816	806.4319022488336	142.63	0.15517	142.66	142.53	142.69	0.030731					4	2	2	0	0	0	0.77861	1	55767	55767		0	0	1	2487600	+		55350	18695	40293	40619	54015	54015					0.01236135879878475
TRGPVVRL	8	Unmodified	_TRGPVVRL_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	A375_MHC_IP_R1	1	449.68487548828125	2	449.285069	896.555585	-0.47287	-0.00021245	0.067197	3.0191E-05	-0.40567	-0.00018226	449.2850729609209	30.038	0.90537	30.038	29.798	30.703	0					40	17	4	0	0	0	0.054387	1	9466	9466		103.35	55.008	1	137030000			55351	3128	40294	40620	54016	54016					0.10316903608190842
TRGPVVRL	8	Unmodified	_TRGPVVRL_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	A375_MHC_IP_R2	2	449.68463134765625	2	449.285069	896.555585	-1.1976	-0.00053808	0.42841	0.00019248	-0.76922	-0.0003456	449.28521470828576	29.207	0.70333	29.905	29.681	30.385	0.69872					35	13	4	0	0	0	0.018824	1	10146	10146		114.65	66.303	1	108140000			55352	3128	40294	40620	54017	54017					0.10316903608190842
TRHIKLRHG	9	Unmodified	_TRHIKLRHG_					0	0	0		nc|ENSG00000215421|Q9C0G0-3|ZNF407;nc|ENSG00000215421|Q9C0G0-2|ZNF407;ENSG00000215421|ENST00000299687|ZNF407	nc|ENSG00000215421|Q9C0G0-3|ZNF407	nc|ENSG00000215421|Q9C0G0-3|ZNF407	MULTI-MSMS	A375_MHC_IP_R2	2	1118.0701904296875	1	1117.67012	1116.66284	0.30741	0.00034358	-0.14437	-0.00016136	0.16303	0.00018222	1117.669619076913	149.63	1.5812	149.65	148.39	149.97	0.01825					109	56	3	0	0	0	0.77827	1	58003	58003		0	0	1	268040			55353	9645	40295	40621	54018	54018					0.10917873542393863
TRHIKLRHG	9	Unmodified	_TRHIKLRHG_					0	0	0		nc|ENSG00000215421|Q9C0G0-3|ZNF407;nc|ENSG00000215421|Q9C0G0-2|ZNF407;ENSG00000215421|ENST00000299687|ZNF407	nc|ENSG00000215421|Q9C0G0-3|ZNF407	nc|ENSG00000215421|Q9C0G0-3|ZNF407	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	1117.67012	1116.66284	-0.28708	-0.00032086	0.096519	0.00010788	-0.19056	-0.00021298	1117.6699462412769	149.53	1.7	149.53	148.26	149.96	0	-0.055292	0.00016414	NaN	0	90	53	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	287150			55354	9645	40295	40621							0.10917873542393863
TRHPPQFC	8	Unmodified	_TRHPPQFC_					0	0	0			REV__ENST00000505730.1_1_4:1101075-1107240:-|nuORF	REV__ENST00000505730.1_1_4:1101075-1107240:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	492.68450927734375	2	493.237261	984.45997	-0.57964	-0.0002859	-0.64187	-0.00031659	-1.2215	-0.00060249	493.23698860400555	131.74	0.15173	131.74	131.63	131.78	0					4	2	2	0	0	0	0.972	1	50751	50751		2.3027	0	1	1764800	+		55355	21496	40296	40622	54019	54019					-0.03288192574370896
TRHWVIRSL	9	Unmodified	_TRHWVIRSL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.S3306Afs*6|1|0.29|ENSG00000086758|chrX:53549078-53549079|-/ACGC|frameshift_variant	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	A375_MHC_IP_R1	1	390.28045654296875	3	389.896363	1166.66726	0.19813	7.7252E-05	-0.57715	-0.00022503	-0.37902	-0.00014778	389.8961897080408	40.787	0.35387	40.787	40.559	40.913	0					12	6	2	0	0	0	0.47067	1	14047	14047		21.241	2.0974	1	2849300			55356	1846	40297	40623	54020	54020					0.09059337965300074
TRHWVIRSL	9	Unmodified	_TRHWVIRSL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.S3306Afs*6|1|0.29|ENSG00000086758|chrX:53549078-53549079|-/ACGC|frameshift_variant	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	A375_MHC_IP_R2	2	390.29638671875	3	389.896363	1166.66726	-0.20073	-7.8266E-05	0.32422	0.00012641	0.12349	4.8148E-05	389.896462168487	39.622	0.40649	40.397	40.219	40.626	0.77451					12	7	2	0	0	0	0.21002	1	14671	14671		37.251	2.1712	1	3222000			55357	1846	40297	40623	54021	54021					0.09059337965300074
TRIDLIQKL	9	Unmodified	_TRIDLIQKL_					0	0	0		ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	MULTI-MSMS	A375_MHC_IP_R1	1	367.6326904296875	3	367.232641	1098.67609	0.3473	0.00012754	0.011981	4.3998E-06	0.35928	0.00013194	367.2326473189909	62.295	2.8576	62.295	61.943	64.8	0					156	55	6	0	0	0	0.034721	5	22412	22412;22647;22719;22865;23237		70.929	13.68	1	238720000			55358	7530	40298	40624	54022;54023;54024;54025;54026	54022					0.1307026681113257
TRIDLIQKL	9	Unmodified	_TRIDLIQKL_					0	0	0		ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	MULTI-MSMS	A375_MHC_IP_R2	2	367.96697998046875	3	367.232641	1098.67609	-0.1545	-5.6737E-05	0.055882	2.0522E-05	-0.098618	-3.6216E-05	367.2327137443679	61.272	3.1377	62.017	61.515	64.653	0.74504					149	61	5	0	0	0	0.034721	4	23142	23142;23367;23587;24049		70.929	13.68	1	306590000			55359	7530	40298	40624	54027;54028;54029;54030	54027					0.1307026681113257
TRIDLIQKL	9	Unmodified	_TRIDLIQKL_					0	0	0		ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	MULTI-MSMS	A375_MHC_IP_R2	2	550.7447509765625	2	550.345323	1098.67609	-1.0934	-0.00060176	0.28791	0.00015845	-0.80551	-0.00044331	550.3454704711554	61.3	2.2227	62.046	61.618	63.84	0.74503					110	43	5	0	0	0	0.0098876	1	23152	23152		118.07	0	1	183870000			55360	7530	40298	40624	54031	54031					0.1307026681113257
TRIEDYFGI	9	Unmodified	_TRIEDYFGI_					0	0	0			REV__ENST00000476417.5_1_10:7615057-7659255:-|nuORF	REV__ENST00000476417.5_1_10:7615057-7659255:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	371.26446533203125	3	371.857351	1112.55022	0.28152	0.00010469	1.477	0.00054924	1.7585	0.00065393	371.8577483056596	25.427	0.3067	25.427	25.306	25.613	0					11	5	3	0	0	0	0.76827	1	7391	7391		2.086	0	1	1108600	+		55361	18236	40299	40625	54032	54032					-0.001548647649542545
TRIEEYFSDAP	11	Unmodified	_TRIEEYFSDAP_					0	0	0			REV__ENST00000515153.1_1_5:92355755-92387432:-|nuORF	REV__ENST00000515153.1_1_5:92355755-92387432:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	664.7112426757812	2	664.311874	1326.6092	-0.70384	-0.00046757	0.007499	4.9817E-06	-0.69634	-0.00046259	664.3118463662934	31.036	0.70809	31.036	30.806	31.514	0					47	13	5	0	0	0	0.56199	1	9883	9883		26.268	2.2476	1	110810000	+		55362	25657	40300	40626	54033	54033					-0.041044332612727885
TRIEEYFSDAP	11	Unmodified	_TRIEEYFSDAP_					0	0	0			REV__ENST00000515153.1_1_5:92355755-92387432:-|nuORF	REV__ENST00000515153.1_1_5:92355755-92387432:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	664.7114868164062	2	664.311874	1326.6092	-0.85386	-0.00056723	-0.030108	-2.0001E-05	-0.88397	-0.00058723	664.3118047165746	30.448	0.75753	31.167	30.911	31.669	0.71857					49	14	5	0	0	0	0.56199	1	10673	10673		26.268	2.2476	1	91715000	+		55363	25657	40300	40626	54034	54034					-0.041044332612727885
TRIKLRRI	8	Unmodified	_TRIKLRRI_					0	0	0		ENST00000389622.6_1_3:97583283-97583379:+|nuORF	ENST00000389622.6_1_3:97583283-97583379:+|nuORF	ENST00000389622.6_1_3:97583283-97583379:+|nuORF	MSMS	A375_MHC_IP_R1	1	352.616943359375	3	352.576854	1054.70873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.214	1	34.214	33.714	34.714	0								0	0	0	0.16876	1	11254	11254		8.7454	0.58988	1				55364	11400	40301	40627	54035	54035					0.183565187246586
TRILRLWAA	9	Unmodified	_TRILRLWAA_					0	0	0		ENSG00000189431|ENST00000529419|RASSF10	ENSG00000189431|ENST00000529419|RASSF10	ENSG00000189431|ENST00000529419|RASSF10	MULTI-SECPEP	A375_MHC_IP_R2	2	367.3013000488281	3	367.229342	1098.6662	0.1111	4.0799E-05	-0.89175	-0.00032748	-0.78065	-0.00028668	367.56322067706174	39.496	0.30419	40.271	40.118	40.422	0.77451					7	5	2	0	0	0	0.69381	1	14641	14641		10.899	10.791	1	625440			55365	8986	40302	40628	54036	54036					0.12081123596431098
TRILTLLHL	9	Unmodified	_TRILTLLHL_					0	0	0			REV__ENST00000494016.1_1_11:61172069-61173437:-|nuORF	REV__ENST00000494016.1_1_11:61172069-61173437:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	360.9692077636719	3	360.569365	1078.68626	-0.23938	-8.6314E-05	-0.89992	-0.00032448	-1.1393	-0.0004108	360.56930132867905	29.73	1.1498	29.73	29.403	30.553	0					47	22	3	0	0	0	0.27715	2	9318	9318;9342		23.79	0	1	21505000	+		55366	25428	40303	40629	54037;54038	54037					0.15006874536379655
TRILTLLHL	9	Unmodified	_TRILTLLHL_					0	0	0			REV__ENST00000494016.1_1_11:61172069-61173437:-|nuORF	REV__ENST00000494016.1_1_11:61172069-61173437:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	360.9690246582031	3	360.569365	1078.68626	-0.94037	-0.00033907	-1.921	-0.00069265	-2.8614	-0.0010317	360.9029009328853	28.9	1.2512	29.598	29.183	30.434	0.69872					62	24	3	0	0	0	0.22528	1	9973	9973		27.223	0	1	14456000	+		55367	25428	40303	40629	54039	54039					0.15006874536379655
TRILVIREI	9	Unmodified	_TRILVIREI_					0	0	0		ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MULTI-SECPEP	A375_MHC_IP_R1	1	371.2562561035156	3	371.576519	1111.70773	0.33855	0.0001258	0.16142	5.9979E-05	0.49997	0.00018578	371.5764979729426	31.844	0.4079	31.844	31.616	32.024	0					10	7	2	0	0	0	0.81448	1	10172	10172		0.77653	0	1	1033400			55368	9244	40304	40630	54040	54040					0.15634259565081265
TRIPKIQK	8	Unmodified	_TRIPKIQK_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	A375_MHC_IP_R1	1	492.7212219238281	2	492.321651	982.62875	-0.72052	-0.00035473	0.089806	4.4214E-05	-0.63071	-0.00031051	492.3216467581943	29.737	1.2002	29.737	29.302	30.503	0					39	23	2	0	0	0	0.31391	1	9274	9274		57.722	6.0922	1	14784000			55369	2906	40305	40631	54041	54041					0.13674032330789032
TRIPKIQK	8	Unmodified	_TRIPKIQK_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	A375_MHC_IP_R2	2	492.72100830078125	2	492.321651	982.62875	-1.2425	-0.00061171	-0.01294	-6.3706E-06	-1.2554	-0.00061808	492.3216802670388	28.938	1.0532	29.636	29.132	30.185	0.69872					36	20	2	0	0	0	0.31391	1	9971	9971		57.722	6.0922	1	15699000			55370	2906	40305	40631	54042	54042					0.13674032330789032
TRIPKIQKL	9	Unmodified	_TRIPKIQKL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	A375_MHC_IP_R1	1	548.746826171875	2	548.863683	1095.71281	-0.92475	-0.00050756	0.017843	9.7934E-06	-0.90691	-0.00049777	548.8636484816533	29.681	2.6693	29.681	29.252	31.921	0					154	52	5	0	0	0	0.018959	2	9340	9340;9362		100.71	35.235	1	345850000			55371	2906	40306	40632	54043;54044	54043					0.16878563427690096
TRIPKIQKL	9	Unmodified	_TRIPKIQKL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	A375_MHC_IP_R1	1	366.64501953125	3	366.244881	1095.71281	0.37836	0.00013857	0.22599	8.2768E-05	0.60435	0.00022134	366.24492745969167	38.768	1.5759	38.768	38.218	39.794	0					63	30	3	0	0	0	0.068433	2	13369	13106;13369		57.108	11.085	1	3660200			55372	2906	40306	40632	54045;54046	54046					0.16878563427690096
TRIPKIQKL	9	Unmodified	_TRIPKIQKL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	A375_MHC_IP_R1	1	366.6328430175781	3	366.244881	1095.71281	0.41498	0.00015199	-0.25665	-9.3998E-05	0.15833	5.7987E-05	366.2448505520088	43.475	1.0172	43.475	42.689	43.706	0					45	19	3	0	0	0	0.4782	1	15155	15155		20.871	7.3525	1	2496800			55373	2906	40306	40632	54047	54047					0.16878563427690096
TRIPKIQKL	9	Unmodified	_TRIPKIQKL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	A375_MHC_IP_R1	1	366.6451110839844	3	366.244881	1095.71281	0.61396	0.00022486	-0.17773	-6.5093E-05	0.43623	0.00015977	366.2447814533295	44.421	1.425	44.421	43.909	45.334	0					45	27	2	0	0	0	0.068187	3	15480	15480;15602;15808		57.204	10.729	1	1627400			55374	2906	40306	40632	54048;54049;54050	54048					0.16878563427690096
TRIPKIQKL	9	Unmodified	_TRIPKIQKL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MSMS	A375_MHC_IP_R1	1	366.2453918457031	3	366.244881	1095.71281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.002	1	29.002	28.502	29.502	0								0	0	0	0.15486	1	9017	9017		6.1918	3.1966	1				55375	2906	40306	40632	54051	54051					0.16878563427690096
TRIPKIQKL	9	Unmodified	_TRIPKIQKL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MSMS	A375_MHC_IP_R1	1	366.2730712890625	3	366.244881	1095.71281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.013	1	58.013	57.513	58.513	0								0	0	0	0.15119	1	20830	20830		19.626	7.4512	1				55376	2906	40306	40632	54052	54052					0.16878563427690096
TRIPKIQKL	9	Unmodified	_TRIPKIQKL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	A375_MHC_IP_R2	2	366.27288818359375	3	366.244881	1095.71281	-0.23461	-8.5925E-05	0.2724	9.9764E-05	0.037784	1.3838E-05	366.24476330327593	20.402	0.66086	21.012	20.752	21.413	0.61029					13	12	2	0	0	0	0.67152	1	6323	6323		9.544	4.647	1	553490			55377	2906	40306	40632	54053	54053					0.16878563427690096
TRIPKIQKL	9	Unmodified	_TRIPKIQKL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	A375_MHC_IP_R2	2	365.97296142578125	3	366.244881	1095.71281	-0.60484	-0.00022152	-0.41082	-0.00015046	-1.0157	-0.00037198	366.24475518123495	28.884	8.8658	29.583	28.878	37.744	0.69872					432	174	6	0	0	0	0.0089677	19	9879	9800;9809;9815;9879;10090;10159;10331;10443;10567;10622;10649;10666;10751;10819;10956;11331;11885;12125;12700		98.73	33.803	1	12004000000			55378	2906	40306	40632	54054;54055;54056;54057;54058;54059;54060;54061;54062;54063;54064;54065;54066;54067;54068;54069;54070;54071;54072	54057					0.16878563427690096
TRIPKIQKL	9	Unmodified	_TRIPKIQKL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	A375_MHC_IP_R2	2	548.7462158203125	2	548.863683	1095.71281	-1.4896	-0.00081758	0.13913	7.6363E-05	-1.3505	-0.00074122	548.8637231778134	28.848	2.6187	29.547	29.08	31.699	0.69872					141	51	4	0	0	0	0.018959	4	10057	9877;10028;10057;10135		100.71	35.235	1	307000000			55379	2906	40306	40632	54073;54074;54075;54076	54075					0.16878563427690096
TRIPKIQKL	9	Unmodified	_TRIPKIQKL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	A375_MHC_IP_R2	2	366.644775390625	3	366.244881	1095.71281	-0.22226	-8.1402E-05	0.1314	4.8126E-05	-0.090858	-3.3276E-05	366.2449070858328	37.89	1.6825	38.664	37.77	39.453	0.77451					75	32	3	0	0	0	0.063448	2	13781	13781;14073		59.052	11.32	1	3710300			55380	2906	40306	40632	54077;54078	54077					0.16878563427690096
TRIPKIQKL	9	Unmodified	_TRIPKIQKL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	A375_MHC_IP_R2	2	366.29144287109375	3	366.244881	1095.71281	-0.012621	-4.6222E-06	0.054702	2.0034E-05	0.042081	1.5412E-05	366.2448730205612	39.323	4.275	40.097	39.351	43.626	0.77451					115	83	2	0	0	0	0.048392	4	14906	14420;14670;14717;14906		64.927	11.61	1	2971200			55381	2906	40306	40632	54079;54080;54081;54082	54082					0.16878563427690096
TRIPKIQKL	9	Unmodified	_TRIPKIQKL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	A375_MHC_IP_R2	2	366.2506408691406	3	366.244881	1095.71281	0.23711	8.6841E-05	-0.19624	-7.1872E-05	0.04087	1.4969E-05	366.24476697769	44.154	1.3156	44.923	43.873	45.188	0.7691					38	25	2	0	0	0	0.095445	2	16353	16103;16353		51.488	10.763	1	1808400			55382	2906	40306	40632	54083;54084	54084					0.16878563427690096
TRIPKIQKL	9	Unmodified	_TRIPKIQKL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	A375_MHC_IP_R2	2	366.6484680175781	3	366.244881	1095.71281	0.024132	8.8381E-06	-0.034747	-1.2726E-05	-0.010616	-3.888E-06	366.24479138607285	44.921	1.3688	45.69	45.138	46.506	0.7691					40	26	2	0	0	0	0.12591	1	16690	16690		46.022	10.41	1	1651900			55383	2906	40306	40632	54085	54085					0.16878563427690096
TRIPKIQKL	9	Unmodified	_TRIPKIQKL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	A375_MHC_IP_R2	2	366.6099853515625	3	366.244881	1095.71281	0.25465	9.3266E-05	-0.14249	-5.2187E-05	0.11216	4.1079E-05	366.244799008701	46.659	0.96542	47.421	46.903	47.869	0.76259					29	18	2	0	0	0	0.68382	1	17444	17444		8.4443	2.6609	1	1453900			55384	2906	40306	40632	54086	54086					0.16878563427690096
TRIPKIQKL	9	Unmodified	_TRIPKIQKL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MSMS	A375_MHC_IP_R2	2	366.2728576660156	3	366.244881	1095.71281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.048	1	57.799	57.299	58.299	0.75015								0	0	0	0.15486	1	21569	21569		12.873	4.1272	1				55385	2906	40306	40632	54087	54087					0.16878563427690096
TRIPKIQKL	9	Unmodified	_TRIPKIQKL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	366.244881	1095.71281	-0.14167	-5.1884E-05	-0.50385	-0.00018453	-0.64552	-0.00023642	366.2447224902357	29.632	9.1204	29.632	29.098	38.218	0	0.024588	-5.5977E-05	NaN	98.73	442	179	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13537000000			55386	2906	40306	40632							0.16878563427690096
TRIPKIQKL	9	Unmodified	_TRIPKIQKL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MATCH	A375_MHC_IP_R1	1		3	366.244881	1095.71281	0.39663	0.00014526	-0.24423	-8.9448E-05	0.1524	5.5815E-05	366.5792315251967	45.814	0.91104	45.814	45.334	46.245	0	0.061655	-0.00012953	NaN	46.022	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1477600			55387	2906	40306	40632							0.16878563427690096
TRIPKIQQL	9	Unmodified	_TRIPKIQQL_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5;ENST00000509378.1_1_4:165110527-165110881:+|nuORF	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-SECPEP	A375_MHC_IP_R1	1	365.9366455078125	3	366.232752	1095.67643	0.25449	9.3203E-05	0.2706	9.9104E-05	0.52509	0.00019231	366.2328394824134	43.834	2.3867	43.834	43.3	45.687	0					123	46	5	0	0	0	0.53098	1	15359	15359		31.636	20.118	1	129590000			55388	1188	40307	40633	54088	54088					0.1324168653097786
TRIPKIQQL	9	Unmodified	_TRIPKIQQL_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5;ENST00000509378.1_1_4:165110527-165110881:+|nuORF	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-SECPEP	A375_MHC_IP_R1	1	548.6873779296875	2	548.84549	1095.67643	-0.52996	-0.00029087	0.19852	0.00010896	-0.33144	-0.00018191	548.8455991453638	43.832	1.5779	43.832	43.351	44.928	0					80	30	5	0	0	0	0.076731	1	15345	15345		71.708	25.687	1	91493000			55389	1188	40307	40633	54089	54089					0.1324168653097786
TRIPKIQQL	9	Unmodified	_TRIPKIQQL_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5;ENST00000509378.1_1_4:165110527-165110881:+|nuORF	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-SECPEP	A375_MHC_IP_R2	2	366.63250732421875	3	366.232752	1095.67643	0.18393	6.7361E-05	-0.020501	-7.5082E-06	0.16343	5.9852E-05	366.2327266619249	42.977	1.7198	43.749	43.218	44.937	0.7724					99	33	5	0	0	0	0.43207	1	15880	15880		31.636	16.387	1	109370000			55390	1188	40307	40633	54090	54090					0.1324168653097786
TRIPKIQQL	9	Unmodified	_TRIPKIQQL_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5;ENST00000509378.1_1_4:165110527-165110881:+|nuORF	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-SECPEP	A375_MHC_IP_R2	2	549.178955078125	2	548.84549	1095.67643	-0.6964	-0.00038222	-0.020045	-1.1002E-05	-0.71645	-0.00039322	548.8454671258621	42.976	1.3659	43.748	43.268	44.634	0.7724					70	26	4	0	0	0	0.058501	1	15947	15947		78.06	32.04	1	56989000			55391	1188	40307	40633	54091	54091					0.1324168653097786
TRIPKVQKL	9	Unmodified	_TRIPKVQKL_					0	0	0		ENSG00000173110|ENST00000309758|HSPA6;ENST00000445535.1_1_1:161576981-161578004:+|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A	ENSG00000173110|ENST00000309758|HSPA6;ENSG00000204388|ENST00000375650|HSPA1B	ENSG00000204388|ENST00000375650|HSPA1B	MULTI-MSMS	A375_MHC_IP_R1	1	542.2556762695312	2	541.855858	1081.69716	-0.58941	-0.00031938	-0.14441	-7.825E-05	-0.73382	-0.00039763	541.8557488285509	25.08	0.70964	25.08	24.852	25.562	0					36	13	4	0	0	0	0.11448	1	7236	7236		59.368	33.1	1	55444000			55392	9437;7769	40308	40634	54092	54092					0.15958276910646418
TRIPKVQKL	9	Unmodified	_TRIPKVQKL_					0	0	0		ENSG00000173110|ENST00000309758|HSPA6;ENST00000445535.1_1_1:161576981-161578004:+|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A	ENSG00000173110|ENST00000309758|HSPA6;ENSG00000204388|ENST00000375650|HSPA1B	ENSG00000204388|ENST00000375650|HSPA1B	MULTI-MSMS	A375_MHC_IP_R2	2	361.97283935546875	3	361.572998	1081.69716	-0.51116	-0.00018482	-0.51245	-0.00018529	-1.0236	-0.00037011	361.5728598707418	24.391	3.2583	25.035	24.499	27.757	0.64368					171	63	5	0	0	0	0.0111	7	7958	7958;8020;8082;8231;8381;8493;8830		94.909	37.981	1	2567600000			55393	9437;7769	40308	40634	54093;54094;54095;54096;54097;54098;54099	54093					0.15958276910646418
TRIPKVQKL	9	Unmodified	_TRIPKVQKL_					0	0	0		ENSG00000173110|ENST00000309758|HSPA6;ENST00000445535.1_1_1:161576981-161578004:+|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A	ENSG00000173110|ENST00000309758|HSPA6;ENSG00000204388|ENST00000375650|HSPA1B	ENSG00000204388|ENST00000375650|HSPA1B	MULTI-SECPEP	A375_MHC_IP_R2	2	542.2553100585938	2	541.855858	1081.69716	-1.1588	-0.00062791	0.18681	0.00010123	-0.972	-0.00052668	541.8559070188394	24.425	0.65911	25.068	24.857	25.516	0.64368					30	12	3	0	0	0	0.3697	1	8005	8005		59.368	28.1	1	56455000			55394	9437;7769	40308	40634	54100	54100					0.15958276910646418
TRIPKVQKL	9	Unmodified	_TRIPKVQKL_					0	0	0		ENSG00000173110|ENST00000309758|HSPA6;ENST00000445535.1_1_1:161576981-161578004:+|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A	ENSG00000173110|ENST00000309758|HSPA6;ENSG00000204388|ENST00000375650|HSPA1B	ENSG00000204388|ENST00000375650|HSPA1B	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	361.572998	1081.69716	0.17098	6.1821E-05	-0.91375	-0.00033039	-0.74277	-0.00026856	361.57273550651513	25.079	3.3392	25.079	24.547	27.887	0	0.021929	-0.00023293	NaN	94.909	190	65	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2423900000			55395	9437;7769	40308	40634							0.15958276910646418
TRIPKVQRL	9	Unmodified	_TRIPKVQRL_					0	0	0		ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000204390|ENST00000375654|HSPA1L	MULTI-SECPEP	A375_MHC_IP_R1	1	371.6429443359375	3	370.90838	1109.70331	0.065493	2.4292E-05	-0.11162	-4.1402E-05	-0.046131	-1.711E-05	371.2426382594662	25.948	0.45583	25.948	25.714	26.17	0					19	8	3	0	0	0	0.78719	1	7691	7691		5.7834	3.6974	1	4259500			55396	9438	40309	40635	54101	54101					0.15284795142179064
TRIPRIRQV	9	Unmodified	_TRIPRIRQV_					0	0	0		ENSG00000155304|ENST00000285667|HSPA13	ENSG00000155304|ENST00000285667|HSPA13	ENSG00000155304|ENST00000285667|HSPA13	MULTI-MSMS	A375_MHC_IP_R1	1	380.977783203125	3	380.243763	1137.70946	0.049082	1.8663E-05	-0.027442	-1.0435E-05	0.02164	8.2284E-06	380.243706411262	26.746	0.70422	26.746	26.423	27.128	0					31	13	3	0	0	0	0.074562	2	7992	7992;8080		55.235	21.79	1	11559000			55397	6135	40310	40636	54102;54103	54102					0.14611313373666235
TRIPRIRQV	9	Unmodified	_TRIPRIRQV_					0	0	0		ENSG00000155304|ENST00000285667|HSPA13	ENSG00000155304|ENST00000285667|HSPA13	ENSG00000155304|ENST00000285667|HSPA13	MULTI-MSMS	A375_MHC_IP_R2	2	380.643798828125	3	380.243763	1137.70946	-0.41335	-0.00015717	0.20126	7.6529E-05	-0.21208	-8.0644E-05	380.24382392055537	25.908	0.76205	26.568	26.296	27.058	0.65992					37	14	3	0	0	0	0.23226	1	8673	8673		35.612	4.9088	1	8151200			55398	6135	40310	40636	54104	54104					0.14611313373666235
TRIPRVRVL	9	Unmodified	_TRIPRVRVL_					0	0	0		ENST00000461361.5_1_3:45016905-45052828:+|nuORF;ENSG00000075914|ENST00000265564|EXOSC7	ENST00000461361.5_1_3:45016905-45052828:+|nuORF	ENST00000461361.5_1_3:45016905-45052828:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	370.98040771484375	3	370.580375	1108.7193	0.21791	8.0753E-05	0.1797	6.6594E-05	0.39761	0.00014735	370.58039920066415	39.517	0.86234	39.517	39.238	40.1	0					40	16	4	0	0	0	0.1915	1	13473	13473		38.615	19.253	1	21327000			55399	1625	40311	40637	54105	54105					0.16928501379084082
TRIPRVRVL	9	Unmodified	_TRIPRVRVL_					0	0	0		ENST00000461361.5_1_3:45016905-45052828:+|nuORF;ENSG00000075914|ENST00000265564|EXOSC7	ENST00000461361.5_1_3:45016905-45052828:+|nuORF	ENST00000461361.5_1_3:45016905-45052828:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	370.9803466796875	3	370.580375	1108.7193	-0.014056	-5.209E-06	-0.18296	-6.7802E-05	-0.19702	-7.3011E-05	370.5802857001737	38.4	0.76447	39.174	38.843	39.607	0.77451					39	14	4	0	0	0	0.70411	1	14108	14108		6.6304	0	1	19364000			55400	1625	40311	40637	54106	54106					0.16928501379084082
TRIRKAKP	8	Unmodified	_TRIRKAKP_					0	0	0			REV__ENSG00000153207|ENST00000648844|AHCTF1	REV__ENSG00000153207|ENST00000648844|AHCTF1	MSMS	A375_MHC_IP_R1	1	485.7190856933594	2	485.319443	968.624333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.938	1	29.938	29.438	30.438	0								0	0	0	0.16876	1	9449	9449		7.9102	2.6795	1		+		55401	19832	40312	40638	54107	54107					0.13876567907891513
TRIRKAKPK	9	Unmodified	_TRIRKAKPK_					0	0	0			REV__ENSG00000153207|ENST00000648844|AHCTF1	REV__ENSG00000153207|ENST00000648844|AHCTF1	MSMS	A375_MHC_IP_R2	2	366.63250732421875	3	366.580375	1096.7193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.679	1	43.451	42.951	43.951	0.7724								0	0	0	0.15486	1	15880	15880		5.7834	0.48655	1		+		55402	19832	40313	40639	54108	54108					0.17480501379054658
TRKKSRRERKR	11	Unmodified	_TRKKSRRERKR_					0	0	0		ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	MSMS	A375_MHC_IP_R1	1	750.7962036132812	2	750.968931	1499.92331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.93	1	144.93	144.43	145.43	0								0	0	0	0.1636	1	55568	55568		0	0	1				55403	4044	40314	40640	54109	54109					0.19334413802403105
TRKLHDKVL	9	Unmodified	_TRKLHDKVL_					0	0	0			REV__nc|ENSG00000164089|Q8TBG4-3|ETNPPL	REV__nc|ENSG00000164089|Q8TBG4-3|ETNPPL	MULTI-MSMS	A375_MHC_IP_R1	1	370.92431640625	3	370.564502	1108.67168	0.39831	0.0001476	-0.21129	-7.8298E-05	0.18702	6.9303E-05	370.5644079632017	28.523	0.50668	28.523	28.238	28.745	0					26	9	4	0	0	0	0.69884	1	8780	8780		7.1017	0	1	14953000	+		55404	20449	40315	40641	54110	54110					0.12168802388214317
TRKLIEHVI	9	Unmodified	_TRKLIEHVI_					0	0	0			REV__ENSG00000047617|ENST00000682330|ANO2	REV__ENSG00000047617|ENST00000682330|ANO2	MULTI-MSMS	A375_MHC_IP_R2	2	370.264404296875	3	370.232752	1107.67643	-0.44398	-0.00016438	0.0096307	3.5656E-06	-0.43435	-0.00016081	370.23265568450273	29.031	1.303	29.729	29.234	30.537	0.69872					44	25	2	0	0	0	0.4875	1	10164	10164		20.415	6.0092	1	10771000	+		55405	16361	40316	40642	54111	54111					0.12689686530984545
TRKLIEHVI	9	Unmodified	_TRKLIEHVI_					0	0	0			REV__ENSG00000047617|ENST00000682330|ANO2	REV__ENSG00000047617|ENST00000682330|ANO2	MULTI-SECPEP	A375_MHC_IP_R2	2	370.6082763671875	3	370.232752	1107.67643	-0.44398	-0.00016438	0.0096307	3.5656E-06	-0.43435	-0.00016081	370.23265568450273	29.031	1.303	29.729	29.234	30.537	0.69872					44	25	2	0	0	0	0.74875	1	9912	9912		15.248	9.0141	1	10771000	+		55406	16361	40316	40642	54112	54112					0.12689686530984545
TRKLLTRLKLL	11	Unmodified	_TRKLLTRLKLL_					0	0	0			REV__ENST00000520878.5_1_5:178045771-178054033:-|nuORF	REV__ENST00000520878.5_1_5:178045771-178054033:-|nuORF	MSMS	A375_MHC_IP_R2	2	452.3325500488281	3	452.313406	1353.91839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.47	1	144.5	144	145	0.024414								0	0	0	0.16358	1	56432	56432		0.094841	0	1		+		55407	25711	40317	40643	54113	54113					0.25558716887098853
TRKQPRLRY	9	Unmodified	_TRKQPRLRY_					0	0	0			REV__ENST00000430420.5_1_X:54948679-54949098:+|nuORF	REV__ENST00000430420.5_1_X:54948679-54949098:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	406.63720703125	3	406.579034	1216.71527	-0.2475	-0.00010063	-0.25814	-0.00010495	-0.50564	-0.00020558	406.91327801112215	24.137	0.35656	24.781	24.55	24.907	0.64368					12	6	3	0	0	0	0.74768	1	7916	7916		2.7352	0.23671	1	7062800	+		55408	24691	40318	40644	54114	54114					0.115584118853576
TRKRKIAL	8	Unmodified	_TRKRKIAL_					0	0	0			REV__ENSG00000134058|ENST00000256443|CDK7	REV__ENSG00000134058|ENST00000256443|CDK7	MULTI-MSMS	A375_MHC_IP_R1	1	493.7347412109375	2	493.335093	984.655633	-0.70251	-0.00034657	-0.019951	-9.8424E-06	-0.72246	-0.00035641	493.3350115310436	147.55	0.32352	147.55	147.42	147.75	0					58	30	3	0	0	0	0.77861	1	56368	56368		0	0	1	478010	+		55409	18748	40319	40645	54115	54115					0.16269140941960814
TRKRRRWRYSL	11	Unmodified	_TRKRRRWRYSL_					0	0	0		ENST00000433071.2_1_21:32931573-32932426:+|nuORF	ENST00000433071.2_1_21:32931573-32932426:+|nuORF	ENST00000433071.2_1_21:32931573-32932426:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	789.8652954101562	2	789.466024	1576.9175	-0.79519	-0.00062777	0.037223	2.9387E-05	-0.75796	-0.00059839	789.4658518040642	143.16	0.60429	143.16	142.79	143.39	0					35	11	4	0	0	0	0.73934	1	54867	54867		0	0	1	7176400			55410	11888	40320	40646	54116	54116					0.15211315290775929
TRKRRRWRYSL	11	Unmodified	_TRKRRRWRYSL_					0	0	0		ENST00000433071.2_1_21:32931573-32932426:+|nuORF	ENST00000433071.2_1_21:32931573-32932426:+|nuORF	ENST00000433071.2_1_21:32931573-32932426:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	526.7132568359375	3	526.646442	1576.9175	-0.27095	-0.0001427	0.52491	0.00027644	0.25395	0.00013374	527.3161116825847	143.12	0.70686	143.16	142.84	143.54	0.030731					47	13	5	0	0	0	0.73934	2	55896	55896;55984		0	0	1	8429300			55411	11888	40320	40646	54117;54118	54117					0.15211315290775929
TRKRRRWRYSL	11	Unmodified	_TRKRRRWRYSL_					0	0	0		ENST00000433071.2_1_21:32931573-32932426:+|nuORF	ENST00000433071.2_1_21:32931573-32932426:+|nuORF	ENST00000433071.2_1_21:32931573-32932426:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	789.8650512695312	2	789.466024	1576.9175	-0.79046	-0.00062404	0.22345	0.0001764	-0.56701	-0.00044764	789.466023033775	143.23	0.60759	143.25	142.83	143.44	0.025742					34	11	4	0	0	0	0.73934	1	55916	55916		0	0	1	7218300			55412	11888	40320	40646	54119	54119					0.15211315290775929
TRKTIPKEQ	9	Unmodified	_TRKTIPKEQ_					0	0	0		TMC3|p.A178T|1|0.3|ENSG00000188869|chr15:81358470-81358470|C/T|missense_variant	TMC3|p.A178T|1|0.3|ENSG00000188869|chr15:81358470-81358470|C/T|missense_variant	TMC3|p.A178T|1|0.3|ENSG00000188869|chr15:81358470-81358470|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	368.28497314453125	3	367.552262	1099.63496	-0.092133	-3.3864E-05	0.60254	0.00022146	0.51041	0.0001876	367.55270962380547	18.858	0.41046	19.461	19.423	19.833	0.60308					24	9	4	0	0	0	0.62591	1	5786	5786		13.615	0.5724	1	70605000			55413	29353	40321	40647	54120	54120					0.08912505771650103
TRKVRKKYI	9	Unmodified	_TRKVRKKYI_					0	0	0			REV__tr|U7T3D1|U7T3D1_FUSNUSmallribosomalsubunitproteinuS17OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsQPE=3SV=1	REV__tr|U7T3D1|U7T3D1_FUSNUSmallribosomalsubunitproteinuS17OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsQPE=3SV=1	MSMS	A375_MHC_IP_R1	1	596.6766357421875	2	596.387857	1190.76116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.556	1	29.556	29.056	30.056	0								0	0	0	0.15486	1	9279	9279		6.7232	2.3939	1		+		55414	28768	40322	40648	54121	54121					0.1734105706759692
TRKVVQGPLVA	11	Unmodified	_TRKVVQGPLVA_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	A375_MHC_IP_R1	1	390.3116455078125	3	389.91179	1166.71354	-0.20359	-7.9382E-05	0.20588	8.0274E-05	0.0022883	8.9223E-07	389.9117966468624	29.63	1.5044	29.63	29.353	30.857	0					64	29	3	0	0	0	0.72964	1	9297	9297		9.2438	0.79947	1	23564000	+		55415	20029	40323	40649	54122	54122					0.13685358076759258
TRKWRRRRR	9	Unmodified	_TRKWRRRRR_					0	0	0		ENST00000306085.10_3_7:100730337-100730388:+|nuORF	ENST00000306085.10_3_7:100730337-100730388:+|nuORF	ENST00000306085.10_3_7:100730337-100730388:+|nuORF	MSMS	A375_MHC_IP_R1	1	685.9259033203125	2	685.926869	1369.83919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.867	1	97.867	97.367	98.367	0								0	0	0	0.15486	1	35956	35956		1.8442	0.51471	1				55416	10573	40324	40650	54123	54123					0.16905927496190998
TRLEEKVEHL	10	Unmodified	_TRLEEKVEHL_					0	0	0		ENSG00000198015|ENST00000549982|MRPL42;ENST00000552326.5_1_12:93862976-93894994:+|nuORF	ENSG00000198015|ENST00000549982|MRPL42	ENSG00000198015|ENST00000549982|MRPL42	MULTI-MSMS	A375_MHC_IP_R2	2	418.96612548828125	3	418.56646	1252.67755	-0.59258	-0.00024803	0.26019	0.00010891	-0.33239	-0.00013913	418.5665364568141	33.709	0.60732	34.461	34.146	34.753	0.75225					38	11	4	0	0	0	0.70312	1	12045	12045		10.899	0.37148	1	25922000			55417	9222	40325	40651	54124	54124					0.06131856109254841
TRLEPRLW	8	Unmodified	_TRLEPRLW_					0	0	0			REV__ENST00000574928.5_1_16:3185143-3187740:+|nuORF	REV__ENST00000574928.5_1_16:3185143-3187740:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	357.9267883300781	3	357.541697	1069.60326	-0.015519	-5.5488E-06	-1.1249	-0.0004022	-1.1404	-0.00040775	357.5412158706627	24.723	0.30531	24.723	24.647	24.953	0					9	5	2	0	0	0	0.97021	1	7138	7138		10.824	1.4408	1	2094700	+		55418	16840	40326	40652	54125	54125					0.07124557808378995
TRLGNNYVLR	10	Unmodified	_TRLGNNYVLR_					0	0	0			REV__ENST00000609967.5_1_20:2674291-2732741:+|nuORF	REV__ENST00000609967.5_1_20:2674291-2732741:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	402.6232604980469	3	402.563161	1204.66765	-0.58089	-0.00023384	0.78064	0.00031426	0.19976	8.0414E-05	402.563325469044	24.22	0.5555	24.22	24.042	24.597	0					25	10	3	0	0	0	0.65106	1	6802	6802		17.049	3.5299	1	20998000	+		55419	16895	40327	40653	54126	54126					0.07350712894503886
TRLHPWRK	8	Unmodified	_TRLHPWRK_					0	0	0		ENST00000435744.5_1_21:14424137-14433010:+|nuORF	ENST00000435744.5_1_21:14424137-14433010:+|nuORF	ENST00000435744.5_1_21:14424137-14433010:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	365.9610290527344	3	365.217437	1092.63048	0.38223	0.0001396	-1.7062	-0.00062315	-1.324	-0.00048355	365.2170018138198	37.585	0.46083	37.585	37.249	37.71	0					15	8	2	0	0	0	0.972	1	12558	12558		11.495	1.9507	1	1120000			55420	11916	40328	40654	54127	54127					0.08787086139409439
TRLLLTSRF	9	Unmodified	_TRLLLTSRF_					0	0	0		ENSG00000128536|ENST00000317716|CDHR3	ENSG00000128536|ENST00000317716|CDHR3	ENSG00000128536|ENST00000317716|CDHR3	MULTI-MSMS	A375_MHC_IP_R1	1	369.94512939453125	3	369.560869	1105.66078	0.35679	0.00013185	0.095342	3.5235E-05	0.45213	0.00016709	369.56087196876143	50.143	0.91916	50.143	49.54	50.459	0					37	17	3	0	0	0	0.69884	1	17653	17653		7.1017	0	1	16245000			55421	4144	40329	40655	54128	54128					0.11217400013947554
TRLLQATEY	9	Unmodified	_TRLLQATEY_					0	0	0		ENSG00000170382|ENST00000367177|LRRN2	ENSG00000170382|ENST00000367177|LRRN2	ENSG00000170382|ENST00000367177|LRRN2	MULTI-MSMS	A375_MHC_IP_R1	1	365.59246826171875	3	365.532868	1093.57677	0.19553	7.1472E-05	-1.048	-0.00038308	-0.85247	-0.0003116	365.53266771869795	25.344	0.91349	25.344	25.053	25.966	0					28	17	2	0	0	0	0.67332	1	7264	7264		6.1918	0	1	6535600			55422	7500	40330	40656	54129	54129					0.03372824126358864
TRLLQLLKQ	9	Unmodified	_TRLLQLLKQ_					0	0	0			REV__ENST00000526246.5_1_11:66099749-66102792:-|nuORF	REV__ENST00000526246.5_1_11:66099749-66102792:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	371.6064147949219	3	371.576519	1111.70773	-0.041259	-1.5331E-05	-0.019154	-7.1171E-06	-0.060413	-2.2448E-05	371.5764144172434	29.655	2.5184	29.655	29.098	31.616	0					123	49	4	0	0	0	0.73491	1	9818	9818		3.8763	1.1411	1	98515000	+		55423	21299	40331	40657	54130	54130					0.15634259565058528
TRLNWQIKDLN	11	Unmodified	_TRLNWQIKDLN_					0	0	0		ENSG00000257138|ENST00000547270|TAS2R38	ENSG00000257138|ENST00000547270|TAS2R38	ENSG00000257138|ENST00000547270|TAS2R38	MSMS	A375_MHC_IP_R1	1	467.65789794921875	3	467.593009	1399.7572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.981	1	35.981	35.481	36.481	0								0	0	0	0.16191	1	12007	12007		8.7518	2.5174	1				55424	9905	40332	40658	54131	54131					0.0733092278321692
TRLPPSSR	8	Unmodified	_TRLPPSSR_					0	0	0			REV__nc|ENSG00000162302|O75676-2|RPS6KA4	REV__nc|ENSG00000162302|O75676-2|RPS6KA4	MULTI-MSMS	A375_MHC_IP_R1	1	457.66473388671875	2	457.264333	912.514114	-0.0093697	-4.2844E-06	0.19438	8.8882E-05	0.18501	8.4597E-05	457.26432263275507	109.18	6.309	109.18	107.95	114.26	0					351	123	3	0	0	0	0.77741	2	40235	40235;41236		4.3292	1.7518	1	34386000	+		55425	20243	40333	40659	54132;54133	54132					0.05435722848858404
TRLPPSSR	8	Unmodified	_TRLPPSSR_					0	0	0			REV__nc|ENSG00000162302|O75676-2|RPS6KA4	REV__nc|ENSG00000162302|O75676-2|RPS6KA4	MULTI-MSMS	A375_MHC_IP_R2	2	457.6641845703125	2	457.264333	912.514114	-0.16701	-7.6366E-05	0.16619	7.5991E-05	-0.00081954	-3.7474E-07	457.2643102122108	108.83	6.2759	109.57	108.24	114.52	0.74683					354	122	3	0	0	0	0.77741	2	41111	41111;41712		4.3292	1.334	1	33927000	+		55426	20243	40333	40659	54134;54135	54134					0.05435722848858404
TRLQRKLDRQR	11	Unmodified	_TRLQRKLDRQR_					0	0	0		tr|U7T556|U7T556_FUSNUTransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00445PE=4SV=1	tr|U7T556|U7T556_FUSNUTransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00445PE=4SV=1	tr|U7T556|U7T556_FUSNUTransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00445PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	735.8421020507812	2	735.442215	1468.86988	-0.89856	-0.00066084	0.92079	0.00067719	0.022235	1.6353E-05	735.4428421632534	142.45	0.55617	142.45	141.98	142.54	0					16	10	2	0	0	0	0.73809	1	54641	54641		1.1933	0	1	2462500			55427	30012	40334	40660	54136	54136					0.15419616299914196
TRLQRKLDRQR	11	Unmodified	_TRLQRKLDRQR_					0	0	0		tr|U7T556|U7T556_FUSNUTransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00445PE=4SV=1	tr|U7T556|U7T556_FUSNUTransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00445PE=4SV=1	tr|U7T556|U7T556_FUSNUTransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00445PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	735.8417358398438	2	735.442215	1468.86988	-0.63528	-0.00046721	0.94458	0.00069468	0.3093	0.00022747	736.44570182525	142.45	0.65976	142.48	141.98	142.64	0.030731					37	12	5	0	0	0	0.73809	2	55667	55667;55740		1.1933	0.10919	1	10798000			55428	30012	40334	40660	54137;54138	54137					0.15419616299914196
TRLQRYSRY	9	Unmodified	_TRLQRYSRY_					0	0	0			REV__SPINT1|p.D349Efs*6|1|0.44|ENSG00000166145|chr15:40854454-40854455|AC/-|frameshift_variant	REV__SPINT1|p.D349Efs*6|1|0.44|ENSG00000166145|chr15:40854454-40854455|AC/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	414.95892333984375	3	414.894911	1241.6629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.979	1	19.582	19.082	20.082	0.60308								0	0	0	0.15486	1	5732	5732		7.609	0.97858	1		+		55429	20652	40335	40661	54139	54139					0.051738287517537174
TRLRDLPD	8	Unmodified	_TRLRDLPD_					0	0	0		ENSG00000204599|ENST00000396551|TRIM39;nc|ENSG00000204599|Q9HCM9|TRIM39	ENSG00000204599|ENST00000396551|TRIM39	ENSG00000204599|ENST00000396551|TRIM39	MULTI-MSMS	A375_MHC_IP_R1	1	493.6746826171875	2	493.274898	984.535243	0.048083	2.3718E-05	-0.3522	-0.00017373	-0.30411	-0.00015001	493.2747025847761	48.515	0.86079	48.515	48.173	49.033	0					46	16	4	0	0	0	0.72284	1	17060	17060		27.629	0	1	36556000			55430	9464	40336	40662	54140	54140					0.04235688157700679
TRLRIGPL	8	Unmodified	_TRLRIGPL_					0	0	0		ENST00000592217.2_1_19:46271832-46273041:+|nuORF	ENST00000592217.2_1_19:46271832-46273041:+|nuORF	ENST00000592217.2_1_19:46271832-46273041:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	462.6797180175781	2	463.300719	924.586885	-0.5876	-0.00027224	-0.072282	-3.3488E-05	-0.65989	-0.00030573	463.3004767320324	142.46	0.45352	142.46	142.29	142.74	0					14	8	2	0	0	0	0.972	1	54695	54695		2.8892	0	1	779040			55431	13810	40337	40663	54141	54141					0.12157476642266829
TRLRLVIVL	9	Unmodified	_TRLRLVIVL_					0	0	0		MER4-int_dup2801|chr22:11928496-11929057:+|1.3088795502841724|0.3924253001856876|1.74|451.0|27|1|anti-sense	MER4-int_dup2801|chr22:11928496-11929057:+|1.3088795502841724|0.3924253001856876|1.74|451.0|27|1|anti-sense	MER4-int_dup2801|chr22:11928496-11929057:+|1.3088795502841724|0.3924253001856876|1.74|451.0|27|1|anti-sense	MULTI-MSMS	A375_MHC_IP_R2	2	361.9850158691406	3	361.585126	1081.73355	-0.23045	-8.3326E-05	-0.06696	-2.4212E-05	-0.29741	-0.00010754	361.58505497918276	32.548	0.71179	33.285	33.01	33.722	0.73691					28	13	3	0	0	0	0.6421	1	11576	11576		12.175	2.0242	1	15704000			55432	14376	40338	40664	54142	54142					0.19595153807358656
TRLSKAKKLR	10	Unmodified	_TRLSKAKKLR_					0	0	0			REV__ENST00000430580.6_1_1:16913598-16914274:-|nuORF	REV__ENST00000430580.6_1_1:16913598-16914274:-|nuORF	MSMS	A375_MHC_IP_R2	2	400.9992370605469	3	400.934818	1199.78262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.167	1	21.786	21.286	22.286	0.61932								0	0	0	0.15597	1	6645	6645		1.4551	0	1		+		55433	24699	40339	40665	54143	54143					0.19072442096307896
TRLTDKAVKDY	11	Unmodified	_TRLTDKAVKDY_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	A375_MHC_IP_R2	2	437.64208984375	3	437.241865	1308.70376	-0.42914	-0.00018764	0.32789	0.00014337	-0.10125	-4.4273E-05	437.2423103108304	36.049	0.81617	36.812	36.384	37.2	0.76338					26	15	3	0	0	0	0.72801	1	13144	13144		5.8681	1.7515	1	3595100			55434	4093	40340	40666	54144	54144					0.06176125280694578
TRLWAVASSL	10	Unmodified	_TRLWAVASSL_					0	0	0		nc|ENSG00000215811|A8MVZ5|BTNL10P	nc|ENSG00000215811|A8MVZ5|BTNL10P	nc|ENSG00000215811|A8MVZ5|BTNL10P	MULTI-SECPEP	A375_MHC_IP_R1	1	552.7089233398438	2	552.314023	1102.61349	-0.34377	-0.00018987	-0.89513	-0.00049439	-1.2389	-0.00068426	552.3134210044162	44.159	2.3932	44.159	42.841	45.234	0					69	46	2	0	0	0	0.90144	1	15485	15485		13.615	6.5131	1	3373600			55435	14905	40341	40667	54145	54145					0.06629120742945815
TRLWLRPW	8	Unmodified	_TRLWLRPW_					0	0	0			REV__ENST00000216487.11_1_14:93154563-93154824:+|nuORF	REV__ENST00000216487.11_1_14:93154563-93154824:+|nuORF	MSMS	A375_MHC_IP_R2	2	376.61383056640625	3	376.553937	1126.63998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.943	1	34.695	34.195	35.195	0.75225								0	0	0	0.16876	1	12199	12199		9.3831	0.13935	1		+		55436	23035	40342	40668	54146	54146					0.0817285442492448
TRMPTRIRLWR	11	Unmodified	_TRMPTRIRLWR_					0	0	0			REV__ENST00000460856.5_2_3:124066044-124103719:+|nuORF	REV__ENST00000460856.5_2_3:124066044-124103719:+|nuORF	MSMS	A375_MHC_IP_R2	2	743.7247924804688	2	743.432804	1484.85106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.23	1	144.26	143.76	144.76	0.024414								0	0	0	0.16355	1	56345	56345		0.26902	0	1		+		55437	24970	40343	40669	54147	54147					0.1280236340448937
TRNKPADYF	9	Unmodified	_TRNKPADYF_					0	0	0		ENSG00000158158|ENST00000377075|CNNM4;nc|ENSG00000158158|Q6P4Q7-2|CNNM4	ENSG00000158158|ENST00000377075|CNNM4	ENSG00000158158|ENST00000377075|CNNM4	MULTI-SECPEP	A375_MHC_IP_R2	2	371.5892028808594	3	371.189212	1110.54581	0.47066	0.0001747	-0.17313	-6.4263E-05	0.29753	0.00011044	371.1891928227698	42.674	0.35478	43.446	43.319	43.674	0.7724					11	6	2	0	0	0	0.80718	1	15914	15914		0.77653	0	1	2882100			55438	6290	40344	40670	54148	54148					-0.005043291878791933
TRNKPADYF	9	Unmodified	_TRNKPADYF_					0	0	0		ENSG00000158158|ENST00000377075|CNNM4;nc|ENSG00000158158|Q6P4Q7-2|CNNM4	ENSG00000158158|ENST00000377075|CNNM4	ENSG00000158158|ENST00000377075|CNNM4	MULTI-MATCH	A375_MHC_IP_R1	1		3	371.189212	1110.54581	0.40284	0.00014953	-0.45091	-0.00016737	-0.048065	-1.7841E-05	371.1891637561166	43.59	0.40603	43.59	43.3	43.706	0	0.071626	-0.00013896	NaN	0.77653	22	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2228300			55439	6290	40344	40670							-0.005043291878791933
TRNPKVIAL	9	Unmodified	_TRNPKVIAL_					0	0	0		ENST00000529227.5_1_11:8705003-8705144:+|nuORF	ENST00000529227.5_1_11:8705003-8705144:+|nuORF	ENST00000529227.5_1_11:8705003-8705144:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	506.1744384765625	2	506.319109	1010.62366	-0.30861	-0.00015626	-0.10765	-5.4507E-05	-0.41626	-0.00021076	506.31899364150206	33.779	0.40283	33.779	33.547	33.95	0					18	7	4	0	0	0	0.47674	1	11058	11058		18.373	18.373	1	5117600			55440	13126	40345	40671	54149	54149					0.11877728468152782
TRNQRNIALL	10	Unmodified	_TRNQRNIALL_					0	0	0			REV__ENST00000338754.8_2_22:26922081-26922195:-|nuORF	REV__ENST00000338754.8_2_22:26922081-26922195:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	399.7464599609375	3	400.238678	1197.6942	-0.38031	-0.00015221	-0.27068	-0.00010834	-0.65099	-0.00026055	400.2386679723383	23.086	0.35729	23.716	23.521	23.878	0.63014					11	6	3	0	0	0	0.92199	1	7413	7413		10.899	1.1347	1	1951500	+		55441	23701	40346	40672	54150	54150					0.10326401785823691
TRNTPLSR	8	Unmodified	_TRNTPLSR_					0	0	0		ENST00000327367.8_1_15:67483135-67483486:+|nuORF	ENST00000327367.8_1_15:67483135-67483486:+|nuORF	ENST00000327367.8_1_15:67483135-67483486:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	473.1667785644531	2	472.76724	943.519927	-0.79265	-0.00037474	-0.34364	-0.00016246	-1.1363	-0.0005372	472.7669936821777	141.75	0.25208	141.75	141.63	141.88	0					6	4	2	0	0	0	0.972	1	54425	54425		3.5965	0	1	1003100			55442	10740	40347	40673	54151	54151					0.04590821360523023
TRPDMIRIL	9	Unmodified	_TRPDMIRIL_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	A375_MHC_IP_R2	2	371.6274719238281	3	372.218226	1113.63285	0.38126	0.00014191	-0.73244	-0.00027263	-0.35118	-0.00013072	372.2179507872056	62.505	0.35472	63.247	63.079	63.434	0.74263					12	6	2	0	0	0	0.81448	1	23741	23741		2.086	0.60411	1	1623500			55443	1771	40348	40674	54152	54152					0.08057753762204811
TRPGPKGNGRP	11	Unmodified	_TRPGPKGNGRP_					0	0	0			REV__ENST00000583655.5_1_17:73127274-73127514:-|nuORF	REV__ENST00000583655.5_1_17:73127274-73127514:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	379.9364013671875	3	379.547623	1135.62104	-0.24396	-9.2593E-05	-0.96566	-0.00036651	-1.2096	-0.00045911	379.54725481514873	52.053	0.96509	52.806	52.017	52.983	0.75225					25	18	2	0	0	0	0.61954	1	19660	19660		21.799	3.4264	1	1612400	+		55444	26365	40349	40675	54153	54153					0.05865273063227505
TRPPHVQLL	9	Unmodified	_TRPPHVQLL_					0	0	0		ENST00000514698.5_1_4:980866-997838:+|nuORF;ENSG00000127415|ENST00000514224|IDUA;nc|ENSG00000127415|P35475-2|IDUA	ENST00000514698.5_1_4:980866-997838:+|nuORF	ENST00000514698.5_1_4:980866-997838:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	354.61358642578125	3	354.213581	1059.61891	0.00053199	1.8844E-07	-0.23092	-8.1796E-05	-0.23039	-8.1608E-05	354.2134991626471	43.647	0.81274	43.647	43.3	44.113	0					31	15	3	0	0	0	0.68382	1	15167	15167		8.4443	1.7211	1	4496100			55445	4088	40350	40676	54154	54154					0.091488443254093
TRPPHVQLL	9	Unmodified	_TRPPHVQLL_					0	0	0		ENST00000514698.5_1_4:980866-997838:+|nuORF;ENSG00000127415|ENST00000514224|IDUA;nc|ENSG00000127415|P35475-2|IDUA	ENST00000514698.5_1_4:980866-997838:+|nuORF	ENST00000514698.5_1_4:980866-997838:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	354.6133117675781	3	354.213581	1059.61891	-0.15452	-5.4733E-05	-0.26439	-9.3649E-05	-0.4189	-0.00014838	354.21345067774934	42.682	0.55749	43.454	43.167	43.724	0.7724					24	10	3	0	0	0	0.65637	1	15871	15871		10.899	2.7434	1	4878600			55446	4088	40350	40676	54155	54155					0.091488443254093
TRPPHVQLL	9	Unmodified	_TRPPHVQLL_					0	0	0		ENST00000514698.5_1_4:980866-997838:+|nuORF;ENSG00000127415|ENST00000514224|IDUA;nc|ENSG00000127415|P35475-2|IDUA	ENST00000514698.5_1_4:980866-997838:+|nuORF	ENST00000514698.5_1_4:980866-997838:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	531.216064453125	2	530.816733	1059.61891	-0.56056	-0.00029756	0.45596	0.00024203	-0.1046	-5.5524E-05	530.8164675183933	42.623	0.65936	43.395	43.065	43.724	0.7724					21	12	2	0	0	0	0.50484	1	15874	15874		34.932	19.684	1	4108700			55447	4088	40350	40676	54156	54156					0.091488443254093
TRPPLIKNL	9	Unmodified	_TRPPLIKNL_					0	0	0		nc|ENSG00000135341|O43318-4|MAP3K7;nc|ENSG00000135341|O43318-3|MAP3K7;nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7	nc|ENSG00000135341|O43318-4|MAP3K7	nc|ENSG00000135341|O43318-4|MAP3K7	MULTI-MSMS	A375_MHC_IP_R1	1	351.6253662109375	3	351.225598	1050.65496	-0.057082	-2.0049E-05	-0.31941	-0.00011218	-0.37649	-0.00013223	351.5597240908044	42.31	0.5051	42.31	42.032	42.537	0					20	9	3	0	0	0	0.030891	1	14623	14623		60.899	40.028	1	3419900			55448	4672	40351	40677	54157	54157					0.13166301502269562
TRPPLIKNL	9	Unmodified	_TRPPLIKNL_					0	0	0		nc|ENSG00000135341|O43318-4|MAP3K7;nc|ENSG00000135341|O43318-3|MAP3K7;nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7	nc|ENSG00000135341|O43318-4|MAP3K7	nc|ENSG00000135341|O43318-4|MAP3K7	MULTI-SECPEP	A375_MHC_IP_R1	1	526.7344360351562	2	526.334759	1050.65496	-0.40309	-0.00021216	-0.69976	-0.00036831	-1.1029	-0.00058047	526.3345275273298	42.266	0.4547	42.266	42.032	42.487	0					13	8	2	0	0	0	0.4465	1	14634	14634		31.268	20.444	1	1803400			55449	4672	40351	40677	54158	54158					0.13166301502269562
TRPPLIKNL	9	Unmodified	_TRPPLIKNL_					0	0	0		nc|ENSG00000135341|O43318-4|MAP3K7;nc|ENSG00000135341|O43318-3|MAP3K7;nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7	nc|ENSG00000135341|O43318-4|MAP3K7	nc|ENSG00000135341|O43318-4|MAP3K7	MULTI-MSMS	A375_MHC_IP_R2	2	351.6253662109375	3	351.225598	1050.65496	-0.46456	-0.00016317	0.24303	8.5357E-05	-0.22153	-7.7808E-05	351.22558568184843	41.226	0.45507	42.001	41.794	42.249	0.77451					18	8	3	0	0	0	0.10637	1	15309	15309		39.923	18.333	1	2790700			55450	4672	40351	40677	54159	54159					0.13166301502269562
TRPPLIKNL	9	Unmodified	_TRPPLIKNL_					0	0	0		nc|ENSG00000135341|O43318-4|MAP3K7;nc|ENSG00000135341|O43318-3|MAP3K7;nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7	nc|ENSG00000135341|O43318-4|MAP3K7	nc|ENSG00000135341|O43318-4|MAP3K7	MULTI-MATCH	A375_MHC_IP_R2	2		2	526.334759	1050.65496	-0.68351	-0.00035975	-0.796	-0.00041896	-1.4795	-0.00077872	526.3346374020545	41.278	0.30399	42.053	41.845	42.149	0.77451	-0.10683	-6.8138E-05	NaN	31.268	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1179100			55451	4672	40351	40677							0.13166301502269562
TRPVKLPI	8	Unmodified	_TRPVKLPI_					0	0	0			REV__ENSG00000075240|ENST00000406902|GRAMD4	REV__ENSG00000075240|ENST00000406902|GRAMD4	MSMS	A375_MHC_IP_R1	1	462.6797180175781	2	462.30547	922.596387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.55	1	142.55	142.05	143.05	0								0	0	0	0.16876	1	54695	54695		2.8892	0	1		+		55452	16653	40352	40678	54160	54160					0.13199244927807285
TRQKQYRWMEW	11	Unmodified	_TRQKQYRWMEW_					0	0	0		nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5;nc|ENSG00000012779|P09917-5|ALOX5;nc|ENSG00000012779|P09917-4|ALOX5	nc|ENSG00000012779|P09917-2|ALOX5	nc|ENSG00000012779|P09917-2|ALOX5	MSMS	A375_MHC_IP_R2	2	537.9489135742188	3	537.933148	1610.77762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.852	1	90.584	90.084	91.084	0.7318								0	0	0	0.16337	1	34189	34189		0.40827	0	1				55453	1012	40353	40679	54161	54161					-0.0033422982864976802
TRQMKRMAQ	9	Unmodified	_TRQMKRMAQ_					0	0	0		ENSG00000138785|ENST00000340139|INTS12	ENSG00000138785|ENST00000340139|INTS12	ENSG00000138785|ENST00000340139|INTS12	MULTI-SECPEP	A375_MHC_IP_R2	2	384.2864074707031	3	383.870832	1148.59067	-0.10045	-3.8559E-05	-2.4946	-0.00095759	-2.595	-0.00099615	383.869337355274	27.723	0.4039	28.402	28.149	28.553	0.67857					13	7	3	0	0	0	0.73926	1	9426	9426		12.873	9.553	1	2093500			55454	5034	40354	40680	54162	54162					0.022314550821647572
TRQSKLAA	8	Unmodified	_TRQSKLAA_					0	0	0		ENSG00000153684|ENST00000526619|GOLGA8F;ENSG00000183629|ENST00000525590|GOLGA8G;ENSG00000261739|ENST00000562295|GOLGA8S;nc|ENSG00000183629|P0DX52-2|GOLGA8F;nc|ENSG00000183629|P0DX53-5|GOLGA8G;nc|ENSG00000183629|P0DX53-4|GOLGA8G;nc|ENSG00000167110|Q08379|GOLGA2;ENSG00000167110|ENST00000611957|GOLGA2;nc|ENSG00000181984|A6NN73|GOLGA8CP	ENSG00000153684|ENST00000526619|GOLGA8F;nc|ENSG00000167110|Q08379|GOLGA2;nc|ENSG00000181984|A6NN73|GOLGA8CP	nc|ENSG00000167110|Q08379|GOLGA2	MSMS	A375_MHC_IP_R2	2	437.67413330078125	2	437.758884	873.503215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.65	1	143.67	143.17	144.17	0.024414								0	0	0	0.16876	1	56132	56132		2.5775	0	1				55455	7156;6039;14799	40355	40681	54163	54163					0.06140320474548844
TRQWEFGAQSI	11	Unmodified	_TRQWEFGAQSI_					0	0	0			REV__nc|ENSG00000047849|P27816-3|MAP4	REV__nc|ENSG00000047849|P27816-3|MAP4	MULTI-MSMS	A375_MHC_IP_R2	2	442.1373291015625	3	441.554443	1321.6415	-0.45644	-0.00020154	-0.24827	-0.00010962	-0.70471	-0.00031117	441.55436412064404	55.258	0.86476	56.009	55.523	56.388	0.75075					37	16	3	0	0	0	0.72909	1	20961	20961		9.7643	2.7272	1	3977200	+		55456	27099	40356	40682	54164	54164					-0.006456010676174628
TRRATSLELP	10	Unmodified	_TRRATSLELP_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MSMS	A375_MHC_IP_R2	2	381.80889892578125	3	381.887533	1142.64077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.707	1	18.303	17.803	18.803	0.59616								0	0	0	0.15629	1	5222	5222		0.13989	0	1				55457	9990	40357	40683	54165	54165					0.07515604283321409
TRRIFCHHL	9	Unmodified	_TRRIFCHHL_					0	0	0		UGT1A10|p.G171R|1|0.17|ENSG00000242515|chr2:233637033-233637033|G/A|missense_variant	UGT1A10|p.G171R|1|0.17|ENSG00000242515|chr2:233637033-233637033|G/A|missense_variant	UGT1A10|p.G171R|1|0.17|ENSG00000242515|chr2:233637033-233637033|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	394.9559326171875	3	394.881948	1181.62402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.193	1	24.193	23.693	24.693	0								0	0	0	0.15486	1	6805	6805		8.1555	0.67846	1				55458	30113	40358	40684	54166	54166					0.04046824916372316
TRRLFKQLRFF	11	Unmodified	_TRRLFKQLRFF_					0	0	0			REV__ENSG00000179314|ENST00000317744|WSCD1	REV__ENSG00000179314|ENST00000317744|WSCD1	MULTI-MSMS	A375_MHC_IP_R1	1	504.9500427246094	3	504.636772	1510.88849	-0.69775	-0.00035211	-0.63757	-0.00032174	-1.3353	-0.00067385	504.63637840581663	138.38	0.35739	138.38	138.25	138.61	0					9	6	2	0	0	0	0.73924	1	53219	53219		0.094841	0	1	1014200	+		55459	21555	40359	40685	54167	54167					0.15347777941747154
TRRLIWAH	8	Unmodified	_TRRLIWAH_					0	0	0		ENST00000523225.1_1_8:6263849-6264612:-|nuORF	ENST00000523225.1_1_8:6263849-6264612:-|nuORF	ENST00000523225.1_1_8:6263849-6264612:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1052.3248291015625	1	1052.61121	1051.60393	-0.16658	-0.00017535	-1.1721	-0.0012338	-1.3387	-0.0014092	1052.6126878109633	121.05	0.20268	121.05	120.96	121.16	0					5	3	2	0	0	0	0.972	1	44898	44898		0.79363	0	1	26141000			55460	13035	40360	40686	54168	54168					0.08019397248085625
TRRLPAAPL	9	Unmodified	_TRRLPAAPL_					0	0	0			REV__ENST00000482396.5_1_3:53003220-53080015:-|nuORF	REV__ENST00000482396.5_1_3:53003220-53080015:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	498.21112060546875	2	497.811451	993.608348	-0.62037	-0.00030883	0.10075	5.0156E-05	-0.51962	-0.00025867	497.81148544204603	39.68	0.40575	39.68	39.491	39.896	0					12	7	2	0	0	0	0.4867	1	13620	13620		20.454	0	1	2505700	+		55461	25280	40361	40687	54169	54169					0.1112886167097713
TRRQVSPLV	9	Unmodified	_TRRQVSPLV_					0	0	0			REV__ENST00000469163.1_1_22:45579971-45580253:+|nuORF	REV__ENST00000469163.1_1_22:45579971-45580253:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	352.92559814453125	3	352.548852	1054.62473	-0.53962	-0.00019024	0.20017	7.057E-05	-0.33944	-0.00011967	352.54883856233596	29.456	0.30416	29.456	29.302	29.607	0					11	5	3	0	0	0	0.58047	1	9182	9182		10.8	0	1	20856000	+		55462	25092	40362	40688	54170	54170					0.09959942837076596
TRRRRRWRRR	10	Unmodified	_TRRRRRWRRR_					0	0	0			REV__ENST00000442267.2_1_4:141622749-141677260:-|nuORF	REV__ENST00000442267.2_1_4:141622749-141677260:-|nuORF	MSMS	A375_MHC_IP_R2	2	777.5435180664062	2	777.980499	1553.94644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.11	1	119.64	119.14	120.14	0.5321								0	0	0	0.15629	1	45331	45331		0.40072	0.093686	1		+		55463	24815	40363	40689	54171	54171					0.19162897430396697
TRRSKRQRRQW	11	Unmodified	_TRRSKRQRRQW_					0	0	0			REV__ENSG00000134460|ENST00000379959|IL2RA	REV__ENSG00000134460|ENST00000379959|IL2RA	MSMS	A375_MHC_IP_R2	2	519.9349365234375	3	519.969696	1556.88726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.608	1	85.344	84.844	85.844	0.73601								0	0	0	0.16358	1	32164	32164		0.094841	0	1		+		55464	18781	40364	40690	54172	54172					0.13108956625592327
TRRSRFPTRH	10	Unmodified	_TRRSRFPTRH_					0	0	0		RIMS1|p.S989F|1|0.32|ENSG00000079841|chr6:72259024-72259024|C/T|missense_variant	RIMS1|p.S989F|1|0.32|ENSG00000079841|chr6:72259024-72259024|C/T|missense_variant	RIMS1|p.S989F|1|0.32|ENSG00000079841|chr6:72259024-72259024|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	657.1990966796875	2	657.368518	1312.72248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.71	1	143.74	143.24	144.24	0.024414								0	0	0	0.15596	1	56157	56157		1.4819	0.15237	1				55465	29080	40365	40691	54173	54173					0.07863144485781959
TRSEFYKHI	9	Unmodified	_TRSEFYKHI_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-SECPEP	A375_MHC_IP_R2	2	393.9275817871094	3	394.208495	1179.60366	-0.48928	-0.00019288	0.21909	8.6366E-05	-0.27019	-0.00010651	394.2085224322316	23.172	0.35595	23.802	23.623	23.979	0.63014					17	6	4	0	0	0	0.56023	1	7399	7399		21.799	21.799	1	13289000			55466	4950	40366	40692	54174	54174					0.021039327375547145
TRSKRRKK	8	Unmodified	_TRSKRRKK_					0	0	0			REV__ENSG00000138136|ENST00000370193|LBX1	REV__ENSG00000138136|ENST00000370193|LBX1	MSMS	A375_MHC_IP_R2	2	353.7777404785156	3	353.900108	1058.67849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.538	1	6.9531	6.4531	7.4531	0.4151								0	0	0	0.16876	1	2084	2084		0	0	1		+		55467	19069	40367	40693	54175	54175					0.15150160059442896
TRSLVAAAAAA	11	Unmodified	_TRSLVAAAAAA_					0	0	0		ENSG00000251493|ENST00000615637|FOXD1	ENSG00000251493|ENST00000615637|FOXD1	ENSG00000251493|ENST00000615637|FOXD1	MULTI-MSMS	A375_MHC_IP_R1	1	1001.9732666015625	1	1001.57382	1000.56654	-0.15118	-0.00015142	-0.28882	-0.00028928	-0.44001	-0.0004407	1001.5733878358011	149.48	1.7899	149.48	148.21	150	0					102	58	2	0	0	0	0.73934	1	57062	57062		0	0	1	195650			55468	9853	40368	40694	54176	54176					0.0662826119176998
TRSLVAAAAAA	11	Unmodified	_TRSLVAAAAAA_					0	0	0		ENSG00000251493|ENST00000615637|FOXD1	ENSG00000251493|ENST00000615637|FOXD1	ENSG00000251493|ENST00000615637|FOXD1	MULTI-MSMS	A375_MHC_IP_R2	2	1001.9742431640625	1	1001.57382	1000.56654	0.20327	0.00020359	-0.43873	-0.00043942	-0.23546	-0.00023583	1001.5731901256206	149.55	1.3149	149.57	148.7	150.01	0.01825					101	53	2	0	0	0	0.73934	1	58004	58004		0	0	1	159650			55469	9853	40368	40694	54177	54177					0.0662826119176998
TRSRYVRLV	9	Unmodified	_TRSRYVRLV_					0	0	0		ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	MULTI-MSMS	A375_MHC_IP_R2	2	384.2996520996094	3	383.899885	1148.67783	-0.53892	-0.00020689	0.088552	3.3995E-05	-0.45037	-0.0001729	383.89989975854	25.057	0.66187	25.701	25.516	26.178	0.64368					27	12	3	0	0	0	0.65637	1	8354	8354		10.899	1.9227	1	8086800			55470	5980	40369	40695	54178	54178					0.10943320619730912
TRSSILLA	8	Unmodified	_TRSSILLA_					0	0	0		CAMSAP3|p.E831K|1|0.15|ENSG00000076826|chr19:7612984-7612984|G/A|missense_variant;ENSG00000076826|ENST00000160298|CAMSAP3;nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	CAMSAP3|p.E831K|1|0.15|ENSG00000076826|chr19:7612984-7612984|G/A|missense_variant	CAMSAP3|p.E831K|1|0.15|ENSG00000076826|chr19:7612984-7612984|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	431.1638488769531	2	430.763635	859.512717	-0.50482	-0.00021746	0.38843	0.00016732	-0.1164	-5.014E-05	430.76409083782426	143.59	0.28868	143.59	143.45	143.73	0					7	5	2	0	0	0	0.972	1	55110	55110		0	0	1	661970			55471	286	40370	40696	54179	54179					0.07734088760105351
TRSTIVYEI	9	Unmodified	_TRSTIVYEI_					0	0	0		nc|ENSG00000131620|Q5XXA6-4|ANO1;nc|ENSG00000131620|Q5XXA6-3|ANO1;nc|ENSG00000131620|Q5XXA6-2|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;ENST00000529913.1_1_11:69951846-69962611:+|nuORF	nc|ENSG00000131620|Q5XXA6-4|ANO1	nc|ENSG00000131620|Q5XXA6-4|ANO1	MULTI-SECPEP	A375_MHC_IP_R2	2	360.6050720214844	3	361.201118	1080.58152	-0.41123	-0.00014854	0.037627	1.3591E-05	-0.3736	-0.00013495	361.20116925654526	35.579	0.4054	36.342	36.081	36.486	0.76338					9	7	2	0	0	0	0.67483	1	12814	12814		19.362	17.109	1	509510			55472	14603	40371	40697	54180	54180					0.04445708269122406
TRSWRTWRW	9	Unmodified	_TRSWRTWRW_					0	0	0			REV__nc|ENSG00000117400|P40238-2|MPL	REV__nc|ENSG00000117400|P40238-2|MPL	MULTI-SECPEP	A375_MHC_IP_R1	1	445.2984924316406	3	445.567017	1333.67922	-0.27611	-0.00012302	0.0020941	9.3307E-07	-0.27401	-0.00012209	445.567055496888	28.012	0.35142	28.012	27.836	28.188	0					10	6	2	0	0	0	0.76642	1	8570	8570		8.9762	8.9762	1	8256500	+		55473	27190	40372	40698	54181	54181					0.025729547084893056
TRTFKHVMSM	10	Unmodified	_TRTFKHVMSM_					0	0	0			REV__ENST00000596682.5_1_19:40871466-40872336:+|nuORF	REV__ENST00000596682.5_1_19:40871466-40872336:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	413.9308776855469	3	413.210854	1236.61073	0.10603	4.3814E-05	-3.4355	-0.0014196	-3.3295	-0.0013758	413.5441224912343	27.378	0.15305	28.056	27.945	28.098	0.67857					4	2	2	0	0	0	0.93999	1	9299	9299		4.7159	4.0891	1	559220	+		55474	26474	40373	40699	54182	54182					0.0018920602212801896
TRTGWSRTSGP	11	Unmodified	_TRTGWSRTSGP_					0	0	0			REV__ENST00000264230.4_1_4:57843333-57843705:-|nuORF	REV__ENST00000264230.4_1_4:57843333-57843705:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	402.6229553222656	3	402.538904	1204.59488	-0.34354	-0.00013829	-0.13318	-5.361E-05	-0.47672	-0.0001919	402.87353571293426	22.94	0.35741	23.571	23.368	23.726	0.63014					10	6	2	0	0	0	0.9754	1	7327	7327		2.2527	0	1	924500	+		55475	23233	40374	40700	54183	54183					0.0007695910110214754
TRTMLNRGM	9	Unmodified	_TRTMLNRGM_					0	0	0			REV__ENST00000428093.1_1_2:68352508-68352655:+|nuORF	REV__ENST00000428093.1_1_2:68352508-68352655:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	360.91986083984375	3	360.519799	1078.53757	-0.40929	-0.00014756	0.86644	0.00031237	0.45715	0.00016481	360.5200572355396	35.6	0.5063	36.363	36.081	36.587	0.76338					17	9	3	0	0	0	0.6656	1	12932	12932		6.6304	6.6304	1	2301200	+		55476	24674	40375	40701	54184	54184					0.0014407729952381487
TRVEKIEII	9	Unmodified	_TRVEKIEII_					0	0	0		nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2;XIRP2|p.S1672Ffs*21|1|0.27|ENSG00000163092|chr2:167246929-167246930|-/T|frameshift_variant	nc|ENSG00000163092|A4UGR9-2|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-SECPEP	A375_MHC_IP_R1	1	368.09820556640625	3	367.560646	1099.66011	0.29446	0.00010823	-0.30702	-0.00011285	-0.012554	-4.6142E-06	367.56062328863493	20.104	0.25327	20.104	20.03	20.283	0					6	4	2	0	0	0	0.73008	1	5135	5135		8.4443	0.96724	1	544680			55477	6631	40376	40702	54185	54185					0.11426560574227551
TRVLLTASTLK	11	Unmodified	_TRVLLTASTLK_					0	0	0		ENSG00000131910|ENST00000254227|NR0B2	ENSG00000131910|ENST00000254227|NR0B2	ENSG00000131910|ENST00000254227|NR0B2	MULTI-SECPEP	A375_MHC_IP_R2	2	401.9869079589844	3	401.587084	1201.73942	-0.18263	-7.334E-05	-0.096024	-3.8562E-05	-0.27865	-0.0001119	401.5870207652244	49.009	0.81118	49.767	49.536	50.348	0.75737					37	15	4	0	0	0	0.99548	1	18394	18394		1.9275	1.9275	1	21081000			55478	4356	40377	40703	54186	54186					0.1466220752836307
TRVPRVQEV	9	Unmodified	_TRVPRVQEV_					0	0	0		nc|ENSG00000149428|Q9Y4L1-2|HYOU1;ENST00000543287.5_1_11:118919950-118926831:-|nuORF;ENSG00000149428|ENST00000617285|HYOU1	nc|ENSG00000149428|Q9Y4L1-2|HYOU1	nc|ENSG00000149428|Q9Y4L1-2|HYOU1	MULTI-SECPEP	A375_MHC_IP_R1	1	362.25738525390625	3	361.88049	1082.61964	-0.15893	-5.7515E-05	-0.14132	-5.1141E-05	-0.30026	-0.00010866	361.8804235831162	26.201	1.161	26.201	25.917	27.078	0					60	22	5	0	0	0	0.37663	1	7832	7832		34.222	18.483	1	34498000			55479	5804	40378	40704	54187	54187					0.08163638974451715
TRVPRVQEV	9	Unmodified	_TRVPRVQEV_					0	0	0		nc|ENSG00000149428|Q9Y4L1-2|HYOU1;ENST00000543287.5_1_11:118919950-118926831:-|nuORF;ENSG00000149428|ENST00000617285|HYOU1	nc|ENSG00000149428|Q9Y4L1-2|HYOU1	nc|ENSG00000149428|Q9Y4L1-2|HYOU1	MULTI-MSMS	A375_MHC_IP_R2	2	362.2803955078125	3	361.88049	1082.61964	-0.61655	-0.00022312	0.064216	2.3239E-05	-0.55233	-0.00019988	361.880509247595	25.49	1.1195	26.134	25.822	26.941	0.64368					60	21	4	0	0	0	0.18338	2	8512	8512;8598		39.213	18.483	1	21357000			55480	5804	40378	40704	54188;54189	54188					0.08163638974451715
TRVPVLRLLL	10	Unmodified	_TRVPVLRLLL_					0	0	0		ENST00000338130.6_1_6:3000212-3002332:+|nuORF	ENST00000338130.6_1_6:3000212-3002332:+|nuORF	ENST00000338130.6_1_6:3000212-3002332:+|nuORF	MSMS	A375_MHC_IP_R2	2	393.9275817871094	3	393.936047	1178.78631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.133	1	23.763	23.263	24.263	0.63014								0	0	0	0.15588	1	7399	7399		1.7423	0	1				55481	10836	40379	40705	54190	54190					0.20407111870167682
TRVRLVFRV	9	Unmodified	_TRVRLVFRV_					0	0	0		ENST00000569766.5_1_16:68118971-68260371:+|nuORF;ENST00000379165.8_1_16:68119584-68225707:+|nuORF;nc|ENSG00000072736|Q12968-6|NFATC3;nc|ENSG00000072736|Q12968-5|NFATC3;ENST00000563288.5_1_16:68120670-68248329:+|nuORF;nc|ENSG00000072736|Q12968-4|NFATC3;ENSG00000072736|ENST00000346183|NFATC3;ENST00000553077.5_1_16:68118971-68225707:+|nuORF;nc|ENSG00000072736|Q12968-2|NFATC3;nc|ENSG00000072736|Q12968-3|NFATC3;ENST00000563319.5_1_16:68118971-68248329:+|nuORF;nc|ENSG00000100968|Q14934-6|NFATC4;nc|ENSG00000100968|Q14934-10|NFATC4;nc|ENSG00000100968|Q14934-9|NFATC4;nc|ENSG00000100968|Q14934-8|NFATC4;ENSG00000100968|ENST00000250373|NFATC4;nc|ENSG00000100968|Q14934-7|NFATC4;nc|ENSG00000131196|O95644-6|NFATC1;nc|ENSG00000100968|Q14934-5|NFATC4;nc|ENSG00000100968|Q14934-4|NFATC4;nc|ENSG00000100968|Q14934-11|NFATC4;nc|ENSG00000131196|O95644-17|NFATC1;nc|ENSG00000100968|Q14934-2|NFATC4;nc|ENSG00000100968|Q14934-3|NFATC4;nc|ENSG00000100968|Q14934-21|NFATC4;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000100968|Q14934-14|NFATC4;ENST00000557028.5_1_14:24837525-24843333:+|nuORF;nc|ENSG00000100968|Q14934-20|NFATC4;nc|ENSG00000100968|Q14934-19|NFATC4;ENST00000539828.6_1_16:68119591-68225707:+|nuORF;ENST00000556302.5_1_14:24838518-24843333:+|nuORF;ENST00000556957.5_1_14:24836547-24843333:+|nuORF;nc|ENSG00000131196|O95644-8|NFATC1;ENSG00000131196|ENST00000427363|NFATC1;nc|ENSG00000100968|Q14934-13|NFATC4;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000100968|Q14934-18|NFATC4;nc|ENSG00000100968|Q14934-17|NFATC4;nc|ENSG00000100968|Q14934-16|NFATC4;nc|ENSG00000100968|Q14934-15|NFATC4;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1;nc|ENSG00000100968|Q14934-12|NFATC4;nc|ENSG00000101096|Q13469-5|NFATC2;nc|ENSG00000101096|Q13469-3|NFATC2;nc|ENSG00000101096|Q13469-4|NFATC2;ENSG00000101096|ENST00000371564|NFATC2;nc|ENSG00000101096|Q13469|NFATC2	ENST00000569766.5_1_16:68118971-68260371:+|nuORF;nc|ENSG00000101096|Q13469-5|NFATC2	ENST00000569766.5_1_16:68118971-68260371:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	382.9679870605469	3	382.580375	1144.7193	0.6503	0.00024879	-0.24991	-9.5609E-05	0.40039	0.00015318	382.58024724377424	49.565	0.50919	49.565	49.336	49.845	0					14	9	2	0	0	0	0.50355	1	17523	17523		19.626	9.4754	1	1395200			55482	1544;2250	40380	40706	54191	54191					0.15272501379058667
TRVRLVFRV	9	Unmodified	_TRVRLVFRV_					0	0	0		ENST00000569766.5_1_16:68118971-68260371:+|nuORF;ENST00000379165.8_1_16:68119584-68225707:+|nuORF;nc|ENSG00000072736|Q12968-6|NFATC3;nc|ENSG00000072736|Q12968-5|NFATC3;ENST00000563288.5_1_16:68120670-68248329:+|nuORF;nc|ENSG00000072736|Q12968-4|NFATC3;ENSG00000072736|ENST00000346183|NFATC3;ENST00000553077.5_1_16:68118971-68225707:+|nuORF;nc|ENSG00000072736|Q12968-2|NFATC3;nc|ENSG00000072736|Q12968-3|NFATC3;ENST00000563319.5_1_16:68118971-68248329:+|nuORF;nc|ENSG00000100968|Q14934-6|NFATC4;nc|ENSG00000100968|Q14934-10|NFATC4;nc|ENSG00000100968|Q14934-9|NFATC4;nc|ENSG00000100968|Q14934-8|NFATC4;ENSG00000100968|ENST00000250373|NFATC4;nc|ENSG00000100968|Q14934-7|NFATC4;nc|ENSG00000131196|O95644-6|NFATC1;nc|ENSG00000100968|Q14934-5|NFATC4;nc|ENSG00000100968|Q14934-4|NFATC4;nc|ENSG00000100968|Q14934-11|NFATC4;nc|ENSG00000131196|O95644-17|NFATC1;nc|ENSG00000100968|Q14934-2|NFATC4;nc|ENSG00000100968|Q14934-3|NFATC4;nc|ENSG00000100968|Q14934-21|NFATC4;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000100968|Q14934-14|NFATC4;ENST00000557028.5_1_14:24837525-24843333:+|nuORF;nc|ENSG00000100968|Q14934-20|NFATC4;nc|ENSG00000100968|Q14934-19|NFATC4;ENST00000539828.6_1_16:68119591-68225707:+|nuORF;ENST00000556302.5_1_14:24838518-24843333:+|nuORF;ENST00000556957.5_1_14:24836547-24843333:+|nuORF;nc|ENSG00000131196|O95644-8|NFATC1;ENSG00000131196|ENST00000427363|NFATC1;nc|ENSG00000100968|Q14934-13|NFATC4;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000100968|Q14934-18|NFATC4;nc|ENSG00000100968|Q14934-17|NFATC4;nc|ENSG00000100968|Q14934-16|NFATC4;nc|ENSG00000100968|Q14934-15|NFATC4;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1;nc|ENSG00000100968|Q14934-12|NFATC4;nc|ENSG00000101096|Q13469-5|NFATC2;nc|ENSG00000101096|Q13469-3|NFATC2;nc|ENSG00000101096|Q13469-4|NFATC2;ENSG00000101096|ENST00000371564|NFATC2;nc|ENSG00000101096|Q13469|NFATC2	ENST00000569766.5_1_16:68118971-68260371:+|nuORF;nc|ENSG00000101096|Q13469-5|NFATC2	ENST00000569766.5_1_16:68118971-68260371:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	382.580375	1144.7193	-0.073001	-2.7929E-05	0.36199	0.00013849	0.28899	0.00011056	382.58044710830615	48.43	0.50463	49.187	48.929	49.434	0.75736	-0.1889	0.00021017	NaN	19.626	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1909600			55483	1544;2250	40380	40706							0.15272501379058667
TRVVAWLA	8	Unmodified	_TRVVAWLA_					0	0	0			REV__ENST00000480897.5_1_1:227919417-227920220:+|nuORF	REV__ENST00000480897.5_1_1:227919417-227920220:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	458.1195068359375	2	458.27417	914.533787	-0.11419	-5.2332E-05	-0.23466	-0.00010754	-0.34885	-0.00015987	458.273951525826	35.281	0.61039	35.281	34.963	35.573	0					15	11	2	0	0	0	0.97021	1	11598	11598		15.847	15.847	1	1490400	+		55484	25249	40381	40707	54192	54192					0.07310098859591108
TRVVLLPRL	9	Unmodified	_TRVVLLPRL_					0	0	0			REV__nc|ENSG00000011478|Q9NXS2-3|QPCTL	REV__nc|ENSG00000011478|Q9NXS2-3|QPCTL	MULTI-MSMS	A375_MHC_IP_R2	2	356.6406555175781	3	356.241359	1065.70225	-0.94639	-0.00033714	0.58552	0.00020859	-0.36088	-0.00012856	356.24055864298947	28.887	1.7596	29.585	29.234	30.993	0.69872					67	34	3	0	0	0	0.69317	1	10118	10118		7.609	0.50723	1	13883000	+		55485	16212	40382	40708	54193	54193					0.17202580773277987
TRWIERLIRE	10	Unmodified	_TRWIERLIRE_					0	0	0			REV__ENSG00000142694|ENST00000490466|EVA1B	REV__ENSG00000142694|ENST00000490466|EVA1B	MSMS	A375_MHC_IP_R1	1	686.3084716796875	2	686.39641	1370.77827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.41	1	143.41	142.91	143.91	0								0	0	0	0.15596	1	55014	55014		1.4819	0	1		+		55486	19321	40383	40709	54194	54194					0.1077093288274682
TRWLKTKHG	9	Unmodified	_TRWLKTKHG_					0	0	0			REV__ENST00000304425.3_1_9:21477017-21559634:-|nuORF	REV__ENST00000304425.3_1_9:21477017-21559634:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	376.62127685546875	3	376.220847	1125.64071	0.39927	0.00015021	0.81528	0.00030673	1.2146	0.00045694	376.221127715023	46.621	0.50941	47.387	47.159	47.668	0.76519					21	9	3	0	0	0	0.7235	1	17452	17452		4.897	1.31	1	4417200	+		55487	23455	40384	40710	54195	54195					0.0829164907397626
TRWLKTKHG	9	Unmodified	_TRWLKTKHG_					0	0	0			REV__ENST00000304425.3_1_9:21477017-21559634:-|nuORF	REV__ENST00000304425.3_1_9:21477017-21559634:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	376.220847	1125.64071	0.39873	0.00015001	1.206	0.0004537	1.6047	0.00060371	376.2212470466594	47.541	0.55654	47.541	47.263	47.819	0	0.077372	0.00022163	NaN	4.897	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5346500	+		55488	23455	40384	40710							0.0829164907397626
TRWPWRWCWRR	11	Unmodified	_TRWPWRWCWRR_					0	0	0			REV__nc|ENSG00000127252|Q9HDD0-2|PLAAT1	REV__nc|ENSG00000127252|Q9HDD0-2|PLAAT1	MSMS	A375_MHC_IP_R1	1	563.5203247070312	3	563.621239	1687.84189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.557	1	21.557	21.057	22.057	0								0	0	0	0.16358	1	5686	5686		0.073264	0.073264	1		+		55489	27211	40385	40711	54196	54196					0.025480148388169255
TRWPWRWCWRR	11	Unmodified	_TRWPWRWCWRR_					0	0	0			REV__nc|ENSG00000127252|Q9HDD0-2|PLAAT1	REV__nc|ENSG00000127252|Q9HDD0-2|PLAAT1	MSMS	A375_MHC_IP_R1	1	563.5202026367188	3	563.621239	1687.84189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.041	1	23.041	22.541	23.541	0								0	0	0	0.16358	1	6256	6256		0.073264	0.073264	1		+		55490	27211	40385	40711	54197	54197					0.025480148388169255
TRYLLESTF	9	Unmodified	_TRYLLESTF_					0	0	0			REV__ENST00000498106.1_1_7:30088860-30089055:+|nuORF	REV__ENST00000498106.1_1_7:30088860-30089055:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	377.97308349609375	3	377.201118	1128.58152	0.076103	2.8706E-05	-2.302	-0.00086831	-2.2259	-0.0008396	377.1999408131379	40.556	0.15189	41.33	41.234	41.386	0.77451					4	2	2	0	0	0	0.69507	1	14984	14984		9.544	3.7605	1	350890	+		55491	17431	40386	40712	54198	54198					0.022377082691491523
TRYPTVKQI	9	Unmodified	_TRYPTVKQI_					0	0	0		nc|ENSG00000107789|Q9UNW1-3|MINPP1;nc|ENSG00000107789|Q9UNW1-2|MINPP1;ENSG00000107789|ENST00000371996|MINPP1	nc|ENSG00000107789|Q9UNW1-3|MINPP1	nc|ENSG00000107789|Q9UNW1-3|MINPP1	MULTI-MSMS	A375_MHC_IP_R1	1	369.6011962890625	3	369.216991	1104.62914	-0.16409	-6.0584E-05	-0.45233	-0.00016701	-0.61642	-0.00022759	369.5509137716942	29.428	0.5078	29.428	28.996	29.504	0					11	9	2	0	0	0	0.53943	1	9232	9232		17.863	1.2973	1	6939700			55492	2758	40387	40713	54199	54199					0.08101407260005544
TRYPTVKQI	9	Unmodified	_TRYPTVKQI_					0	0	0		nc|ENSG00000107789|Q9UNW1-3|MINPP1;nc|ENSG00000107789|Q9UNW1-2|MINPP1;ENSG00000107789|ENST00000371996|MINPP1	nc|ENSG00000107789|Q9UNW1-3|MINPP1	nc|ENSG00000107789|Q9UNW1-3|MINPP1	MULTI-SECPEP	A375_MHC_IP_R2	2	368.6964416503906	3	369.216991	1104.62914	-0.23465	-8.6637E-05	0.34912	0.0001289	0.11447	4.2265E-05	369.5509555182761	28.642	1.0627	29.341	28.371	29.434	0.69872					29	20	2	0	0	0	0.67323	1	9946	9946		23.801	10.282	1	11141000			55493	2758	40387	40713	54200	54200					0.08101407260005544
TRYTNLLFETH	11	Unmodified	_TRYTNLLFETH_					0	0	0			REV__ENSG00000163359|ENST00000295550|COL6A3	REV__ENSG00000163359|ENST00000295550|COL6A3	MSMS	A375_MHC_IP_R1	1	697.7670288085938	2	697.856783	1393.69901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.177	1	97.177	96.677	97.677	0								0	0	0	0.16223	1	35705	35705		7.1017	0	1		+		55494	20352	40388	40714	54201	54201					0.01791241137925681
TRYVPFFFFRF	11	Unmodified	_TRYVPFFFFRF_					0	0	0			REV__ENST00000373095.5_1_9:130703123-130703396:-|nuORF	REV__ENST00000373095.5_1_9:130703123-130703396:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	764.30322265625	2	763.900797	1525.78704	-0.61856	-0.00047252	3.4951	0.0026699	2.8765	0.0021974	763.9032382256005	129.27	0.30536	129.27	129.14	129.45	0					11	5	3	0	0	0	0.73459	1	49778	49778		4.5289	0.33936	1	9779100	+		55495	24081	40389	40715	54202	54202					0.045179065192087364
TRYWRKAD	8	Unmodified	_TRYWRKAD_					0	0	0		ENST00000366923.7_1_1:220146642-220146696:-|nuORF	ENST00000366923.7_1_1:220146642-220146696:-|nuORF	ENST00000366923.7_1_1:220146642-220146696:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	366.6328125	3	365.861319	1094.56213	0.25746	9.4195E-05	-0.76243	-0.00027894	-0.50496	-0.00018475	365.8607054124301	44.072	0.25538	44.072	43.909	44.165	0					6	4	2	0	0	0	0.972	1	15388	15388		3.2813	0.54611	1	354430			55496	11070	40390	40716	54203	54203					0.018627967689099023
TSAFELVRD	9	Unmodified	_TSAFELVRD_					0	0	0		nc|ENSG00000183914|Q9P225-2|DNAH2;ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-3|DNAH2	nc|ENSG00000183914|Q9P225-2|DNAH2	nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-SECPEP	A375_MHC_IP_R2	2	518.6948852539062	2	519.266739	1036.51892	-0.82585	-0.00042884	0.23158	0.00012025	-0.59427	-0.00030859	519.2667554001446	50.548	0.60916	51.302	50.955	51.564	0.75406					17	11	2	0	0	0	0.4261	1	18903	18903		30.637	15.798	1	3044200			55497	8541	40391	40717	54204	54204					0.002125622009543804
TSAGEGNGPWL	11	Unmodified	_TSAGEGNGPWL_					0	0	0			REV__ENST00000472831.5_1_5:176884436-176895158:-|nuORF	REV__ENST00000472831.5_1_5:176884436-176895158:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	545.1539916992188	2	544.753995	1087.49344	-0.29261	-0.0001594	0.2828	0.00015406	-0.0098151	-5.3468E-06	544.7542057795944	48.096	2.2831	48.096	46.952	49.235	0					86	44	2	0	0	0	0.33856	3	16871	16871;17039;17331		43.772	9.3707	1	6448100	+		55498	17803	40392	40718	54205;54206;54207	54205					-0.04680912321487085
TSAGEGNGPWL	11	Unmodified	_TSAGEGNGPWL_					0	0	0			REV__ENST00000472831.5_1_5:176884436-176895158:-|nuORF	REV__ENST00000472831.5_1_5:176884436-176895158:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	545.1539916992188	2	544.753995	1087.49344	-0.29261	-0.0001594	0.2828	0.00015406	-0.0098151	-5.3468E-06	544.7542057795944	48.096	2.2831	48.096	46.952	49.235	0					86	44	2	0	0	0	0.4173	1	16871	16871		43.772	16.889	1	6448100	+		55499	17803	40392	40718	54208	54208					-0.04680912321487085
TSAGEGNGPWL	11	Unmodified	_TSAGEGNGPWL_					0	0	0			REV__ENST00000472831.5_1_5:176884436-176895158:-|nuORF	REV__ENST00000472831.5_1_5:176884436-176895158:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	545.1543579101562	2	544.753995	1087.49344	-0.65658	-0.00035767	0.53818	0.00029318	-0.1184	-6.4498E-05	544.754334978099	47.481	2.1812	48.242	47.054	49.235	0.76128					84	42	2	0	0	0	0.33856	1	17793	17793		43.772	9.3707	1	7199400	+		55500	17803	40392	40718	54209	54209					-0.04680912321487085
TSAGIMDHEK	10	Unmodified	_TSAGIMDHEK_					0	0	0		ENST00000428212.1_1_7:131387063-131387138:-|nuORF	ENST00000428212.1_1_7:131387063-131387138:-|nuORF	ENST00000428212.1_1_7:131387063-131387138:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	545.1534423828125	2	544.755681	1087.49681	-0.75222	-0.00040977	-2.027	-0.0011042	-2.7792	-0.001514	544.7541239265894	42.112	0.56207	42.884	42.605	43.167	0.7724					22	10	3	0	0	0	0.39599	1	15649	15649		34.402	0.29928	1	4895500			55501	11832	40393	40719	54210	54210					-0.04343985539117057
TSAIFEMDIVT	11	Unmodified	_TSAIFEMDIVT_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	A375_MHC_IP_R1	1	409.6038513183594	3	409.53729	1225.59004	0.24413	9.9982E-05	-2.0919	-0.0008567	-1.8477	-0.00075672	409.53638945862434	38.818	0.55902	38.818	38.577	39.136	0					17	10	2	0	0	0	0.69231	1	13184	13184		9.2438	0	1	2652300	+		55502	17711	40394	40720	54211	54211					-0.013731058765642956
TSAKCRSSFMT	11	Unmodified	_TSAKCRSSFMT_					0	0	0		ENST00000533453.5_1_6:117853431-117860057:+|nuORF	ENST00000533453.5_1_6:117853431-117860057:+|nuORF	ENST00000533453.5_1_6:117853431-117860057:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	407.6108093261719	3	406.858369	1217.55328	0.08654	3.5209E-05	2.8935	0.0011773	2.9801	0.0012125	406.85900210231046	27.362	0.40734	28.041	27.843	28.251	0.67857					10	7	2	0	0	0	0.9836	1	9345	9345		6.2344	3.1621	1	2408600			55503	13199	40395	40721	54212	54212					-0.046796809740953904
TSAKVNWMP	9	Unmodified	_TSAKVNWMP_					0	0	0		nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB;ENST00000507684.1_1_6:31978569-31980175:-|nuORF;nc|ENSG00000248290|Q16473|TNXA;nc|ENSG00000168477|P22105-2|TNXB	nc|ENSG00000168477|P22105-1|TNXB	nc|ENSG00000168477|P22105-1|TNXB	MULTI-MSMS	A375_MHC_IP_R1	1	517.6851196289062	2	517.260402	1032.50625	-0.46186	-0.0002389	0.14381	7.4385E-05	-0.31806	-0.00016452	517.2604694666832	53.602	0.71192	53.602	53.301	54.013	0					28	13	3	0	0	0	0.3054	2	19119	19081;19119		30.225	7.0764	1	6359000			55504	7306	40396	40722	54213;54214	54214					-0.008701724629418095
TSALMRTLKK	10	Unmodified	_TSALMRTLKK_					0	0	0			REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	MSMS	A375_MHC_IP_R2	2	383.6001892089844	3	383.565514	1147.67471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.772	1	41.546	41.046	42.046	0.77451								0	0	0	0.15411	1	15108	15108		7.4771	0.18784	1		+		55505	17182	40397	40723	54215	54215					0.10678309450736378
TSAPTGHTF	9	Unmodified	_TSAPTGHTF_					0	0	0		ENSG00000116685|ENST00000376572|KIAA2013;nc|ENSG00000116685|Q8IYS2-2|KIAA2013	ENSG00000116685|ENST00000376572|KIAA2013	ENSG00000116685|ENST00000376572|KIAA2013	MULTI-SECPEP	A375_MHC_IP_R1	1	459.98046875	2	459.719424	917.424296	-0.21695	-9.9735E-05	-0.33978	-0.0001562	-0.55673	-0.00025594	459.71924491075737	25.247	0.45742	25.247	25.104	25.562	0					15	8	2	0	0	0	0.05755	1	7335	7335		81.613	53.126	1	6523700			55506	3417	40398	40724	54216	54216					-0.037719515503795265
TSAPTGHTF	9	Unmodified	_TSAPTGHTF_					0	0	0		ENSG00000116685|ENST00000376572|KIAA2013;nc|ENSG00000116685|Q8IYS2-2|KIAA2013	ENSG00000116685|ENST00000376572|KIAA2013	ENSG00000116685|ENST00000376572|KIAA2013	MULTI-SECPEP	A375_MHC_IP_R2	2	460.1192626953125	2	459.719424	917.424296	-0.77063	-0.00035427	0.024894	1.1444E-05	-0.74573	-0.00034283	459.7193276306859	24.696	0.50728	25.339	25.161	25.668	0.64368					11	9	2	0	0	0	0.16229	1	8191	8191		48.346	12.302	1	4614200			55507	3417	40398	40724	54217	54217					-0.037719515503795265
TSARRHACTSP	11	Unmodified	_TSARRHACTSP_					0	0	0			REV__ENST00000467847.1_1_7:100730122-100730239:+|nuORF	REV__ENST00000467847.1_1_7:100730122-100730239:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	396.2803955078125	3	396.196373	1185.56729	-0.29689	-0.00011763	-0.30723	-0.00012172	-0.60412	-0.00023935	396.1962236393215	28.97	0.50693	28.97	28.694	29.201	0					20	9	3	0	0	0	0.98524	1	8973	8973		3.5927	0	1	5409900	+		55508	25062	40399	40725	54218	54218					-0.018072674307859415
TSAVISLTSV	10	Unmodified	_TSAVISLTSV_					0	0	0			REV__SUSD6|p.P117S|1|0.32|ENSG00000100647|chr14:69704633-69704633|C/T|missense_variant	REV__SUSD6|p.P117S|1|0.32|ENSG00000100647|chr14:69704633-69704633|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	488.6482849121094	2	489.279315	976.544076	0.19899	9.7362E-05	-0.429	-0.0002099	-0.23001	-0.00011254	489.27906006211225	49.182	0.50684	49.182	48.983	49.49	0					16	9	2	0	0	0	0.38158	1	17385	17385		36.127	0	1	1575400	+		55509	28063	40400	40726	54219	54219					0.054866170035211326
TSCADTLRY	9	Carbamidomethyl (C)	_TSC(Carbamidomethyl (C))ADTLRY_	TSC(1)ADTLRY		TSC(130)ADTLRY		0	1	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1;ENST00000588015.5_1_16:4721412-4726932:+|nuORF	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-MSMS	A375_MHC_IP_R1	1	544.1475219726562	2	543.747856	1085.48116	-0.80403	-0.00043719	-0.76967	-0.00041851	-1.5737	-0.0008557	543.7478692419357	32.595	0.80976	32.595	32.179	32.989	0					43	15	4	0	0	0	0.0061124	2	10553	10553;10620		133.05	57.291	1	19326000			55510	2398	40401	40727	54220;54221	54220	14				-0.058162720561767856
TSCADTLRY	9	Carbamidomethyl (C)	_TSC(Carbamidomethyl (C))ADTLRY_	TSC(1)ADTLRY		TSC(130)ADTLRY		0	1	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1;ENST00000588015.5_1_16:4721412-4726932:+|nuORF	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-MSMS	A375_MHC_IP_R2	2	544.1474609375	2	543.747856	1085.48116	-0.82421	-0.00044816	-0.54882	-0.00029842	-1.373	-0.00074658	543.7479431069008	31.892	0.71054	32.629	32.249	32.96	0.73691					56	13	6	0	0	0	0.0061124	3	11304	11304;11340;11400		133.05	57.291	1	22275000			55511	2398	40401	40727	54222;54223;54224	54222	14				-0.058162720561767856
TSDCEYLSLP	10	Unmodified	_TSDCEYLSLP_					0	0	0			REV__nc|ENSG00000153246|Q13018-2|PLA2R1	REV__nc|ENSG00000153246|Q13018-2|PLA2R1	MULTI-SECPEP	A375_MHC_IP_R2	2	564.6954956054688	2	564.249897	1126.48524	-0.92708	-0.00052311	-2.8774	-0.0016236	-3.8045	-0.0021467	564.2479116823687	34.048	0.3544	34.8	34.55	34.904	0.75225					9	6	2	0	0	0	0.78945	1	12270	12270		25.399	1.3787	1	2769500	+		55512	19834	40402	40728	54225	54225					-0.07294227353122551
TSDDHVIQY	9	Unmodified	_TSDDHVIQY_					0	0	0		nc|ENSG00000284762|O95263-3|PDE8B;nc|ENSG00000284762|O95263-4|PDE8B;ENSG00000113231|ENST00000264917|PDE8B	nc|ENSG00000284762|O95263-3|PDE8B	nc|ENSG00000284762|O95263-3|PDE8B	MULTI-SECPEP	A375_MHC_IP_R1	1	539.6458129882812	2	539.246003	1076.47745	-0.8121	-0.00043792	0.86723	0.00046765	0.055121	2.9724E-05	539.2464377620007	36.92	0.50411	36.92	36.644	37.148	0					14	9	2	0	0	0	0.16676	1	12442	12442		58.679	38.225	1	3176700			55513	3132	40403	40729	54226	54226					-0.057726185583760525
TSDDHVIQY	9	Unmodified	_TSDDHVIQY_					0	0	0		nc|ENSG00000284762|O95263-3|PDE8B;nc|ENSG00000284762|O95263-4|PDE8B;ENSG00000113231|ENST00000264917|PDE8B	nc|ENSG00000284762|O95263-3|PDE8B	nc|ENSG00000284762|O95263-3|PDE8B	MULTI-SECPEP	A375_MHC_IP_R2	2	539.6450805664062	2	539.246003	1076.47745	-0.97257	-0.00052445	0.017817	9.6076E-06	-0.95475	-0.00051485	539.2459173968443	36.184	0.40849	36.955	36.749	37.157	0.7709					11	7	2	0	0	0	0.10103	1	13224	13224		71.922	71.922	1	1917200			55514	3132	40403	40729	54227	54227					-0.057726185583760525
TSDDNLWACLH	11	Unmodified	_TSDDNLWACLH_					0	0	0		ENSG00000154803|ENST00000285071|FLCN;ENST00000466317.1_1_17:17124695-17126113:-|nuORF;nc|ENSG00000154803|Q8NFG4-2|FLCN	ENSG00000154803|ENST00000285071|FLCN	ENSG00000154803|ENST00000285071|FLCN	MULTI-MSMS	A375_MHC_IP_R2	2	638.676513671875	2	637.777145	1273.53974	-0.79275	-0.0005056	-2.1901	-0.0013968	-2.9828	-0.0019024	638.2773443530632	30.7	0.50417	31.419	31.165	31.669	0.71857					23	9	4	0	0	0	0.72119	1	10814	10814		13.906	1.6654	1	4297300			55515	6110	40404	40730	54228	54228					-0.08609215481692445
TSDDPWLTAY	10	Unmodified	_TSDDPWLTAY_					0	0	0		ENSG00000137055|ENST00000397292|PLAA;ENST00000521968.1_1_9:26919278-26919473:-|nuORF	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-SECPEP	A375_MHC_IP_R1	1	585.1611938476562	2	584.761486	1167.50842	-0.22601	-0.00013216	0.092487	5.4083E-05	-0.13353	-7.8081E-05	584.7614194758505	104.14	0.66136	104.14	103.83	104.49	0					29	12	3	0	0	0	0.025827	1	38212	38212		118.89	99.638	1	3895000			55516	4853	40405	40731	54229	54229					-0.06863465244146028
TSDDPWLTAY	10	Unmodified	_TSDDPWLTAY_					0	0	0		ENSG00000137055|ENST00000397292|PLAA;ENST00000521968.1_1_9:26919278-26919473:-|nuORF	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	A375_MHC_IP_R2	2	585.161376953125	2	584.761486	1167.50842	-0.44999	-0.00026313	0.18283	0.00010691	-0.26716	-0.00015622	584.7614443602594	103.49	0.65985	104.25	103.89	104.55	0.76428					29	12	3	0	0	0	0.0075909	1	39165	39165		131.27	131.27	1	5113700			55517	4853	40405	40731	54230	54230					-0.06863465244146028
TSDDVKEQIY	10	Unmodified	_TSDDVKEQIY_					0	0	0		ENSG00000110700|ENST00000525634|RPS13;ENST00000526895.5_1_11:17095982-17099246:-|nuORF;ENST00000534329.1_1_11:17098694-17099257:-|nuORF	ENSG00000110700|ENST00000525634|RPS13	ENSG00000110700|ENST00000525634|RPS13	MULTI-MSMS	A375_MHC_IP_R1	1	599.6851196289062	2	599.285325	1196.5561	-0.44179	-0.00026476	0.27636	0.00016562	-0.16544	-9.9143E-05	599.2854999085931	34.33	1.0612	34.33	33.698	34.759	0					53	20	5	0	0	0	2.5834E-07	1	11271	11271		205.91	130.15	1	30574000			55518	2940	40406	40732	54231	54231					-0.03431811043947164
TSDDVKEQIY	10	Unmodified	_TSDDVKEQIY_					0	0	0		ENSG00000110700|ENST00000525634|RPS13;ENST00000526895.5_1_11:17095982-17099246:-|nuORF;ENST00000534329.1_1_11:17098694-17099257:-|nuORF	ENSG00000110700|ENST00000525634|RPS13	ENSG00000110700|ENST00000525634|RPS13	MULTI-MSMS	A375_MHC_IP_R2	2	599.6847534179688	2	599.285325	1196.5561	-1.0373	-0.00062163	0.72294	0.00043324	-0.31436	-0.00018839	599.2857725754218	33.719	1.0641	34.471	33.84	34.904	0.75225					50	20	4	0	0	0	8.981E-06	1	12058	12058		192.32	125.86	1	27421000			55519	2940	40406	40732	54232	54232					-0.03431811043947164
TSDEIQPLY	9	Unmodified	_TSDEIQPLY_					0	0	0		ENSG00000039319|ENST00000505560|ZFYVE16;nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16;ENST00000510995.1_1_5:79729945-79735859:+|nuORF;ENST00000512558.5_1_5:79729945-79747536:+|nuORF	ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	MULTI-SECPEP	A375_MHC_IP_R1	1	533.4257202148438	2	533.258579	1064.50261	-0.67585	-0.00036041	-3.8877	-0.0020731	-4.5635	-0.0024335	533.254978409113	46.344	0.50241	46.344	46.043	46.545	0					19	9	3	0	0	0	0.65246	1	16209	16209		21.747	13.836	1	929670			55520	1158	40407	40733	54233	54233					-0.02706563755782554
TSDELQFGY	9	Unmodified	_TSDELQFGY_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	A375_MHC_IP_R1	1	531.2470703125	2	530.235104	1058.45566	-0.63859	-0.0003386	0.087793	4.6551E-05	-0.55079	-0.00029205	530.2351458275778	83.605	1.4215	83.605	83.175	84.596	0					84	27	5	0	0	0	0.12592	2	30720	30616;30720		46.021	25.567	1	74927000			55521	5898	40408	40734	54234;54235	54235					-0.07123423306939003
TSDELQFGY	9	Unmodified	_TSDELQFGY_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	A375_MHC_IP_R2	2	530.7528686523438	2	530.235104	1058.45566	-0.59822	-0.0003172	-0.5899	-0.00031279	-1.1881	-0.00062998	530.2348887986409	83.028	1.2144	83.768	83.294	84.508	0.73962					93	23	7	0	0	0	0.0097266	5	31561	31554;31561;31642;31703;31762		111.29	77.185	1	96286000			55522	5898	40408	40734	54236;54237;54238;54239;54240	54237					-0.07123423306939003
TSDEMYWES	9	Unmodified	_TSDEMYWES_					0	0	0			REV__ENST00000344138.8_1_22:40297169-40297247:+|nuORF	REV__ENST00000344138.8_1_22:40297169-40297247:+|nuORF	MSMS	A375_MHC_IP_R2	2	574.1743774414062	2	574.216054	1146.41756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.274	1	54.025	53.525	54.525	0.75105								0	0	0	0.15486	1	20100	20100		7.9102	1.187	1		+		55523	23757	40409	40735	54241	54241					-0.14979677283918136
TSDEPQPVLE	10	Unmodified	_TSDEPQPVLE_					0	0	0			REV__nc|ENSG00000178202|Q7Z4H8-2|POGLUT3	REV__nc|ENSG00000178202|Q7Z4H8-2|POGLUT3	MULTI-MSMS	A375_MHC_IP_R2	2	558.6681518554688	2	557.766768	1113.51898	-0.83992	-0.00046848	-0.21296	-0.00011878	-1.0529	-0.00058726	557.7664656902768	44.954	1.3688	45.723	45.39	46.759	0.7691					62	26	4	0	0	0	0.70329	1	16761	16761		10.824	0	1	17543000	+		55524	21493	40410	40736	54242	54242					-0.033234825896897746
TSDESRTDR	9	Unmodified	_TSDESRTDR_					0	0	0			REV__ENSG00000053900|ENST00000315368|ANAPC4	REV__ENSG00000053900|ENST00000315368|ANAPC4	MSMS	A375_MHC_IP_R1	1	533.7002563476562	2	533.741616	1065.46868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.536	1	46.536	46.036	47.036	0								0	0	0	0.15486	1	16332	16332		12.532	0	1		+		55525	16400	40411	40737	54243	54243					-0.06143592194871417
TSDETTLEY	9	Unmodified	_TSDETTLEY_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.K1434Nfs*14|1|0.29|ENSG00000153207|chr1:246855808-246855809|AC/-|frameshift_variant;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;ENST00000420969.1_1_2:162360026-162361742:-|nuORF;ENST00000483900.1_1_1:247015289-247040365:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MSMS	A375_MHC_IP_R1	1	530.6823120117188	2	529.729852	1057.44515	-0.56708	-0.0003004	0.14101	7.4696E-05	-0.42607	-0.0002257	529.7298327350403	50.644	0.9643	50.644	50.204	51.168	0					49	18	4	0	0	0	0.17328	1	17912	17912		39.957	16.809	1	13682000			55526	6016	40412	40738	54244	54244					-0.08127450752022014
TSDETTLEY	9	Unmodified	_TSDETTLEY_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.K1434Nfs*14|1|0.29|ENSG00000153207|chr1:246855808-246855809|AC/-|frameshift_variant;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;ENST00000420969.1_1_2:162360026-162361742:-|nuORF;ENST00000483900.1_1_1:247015289-247040365:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-SECPEP	A375_MHC_IP_R2	2	529.9622802734375	2	529.729852	1057.44515	-0.8041	-0.00042596	0.084939	4.4995E-05	-0.71916	-0.00038096	529.7298164581877	50.028	0.9163	50.782	50.394	51.311	0.75406					50	17	4	0	0	0	0.023756	1	18777	18777		104.8	104.8	1	16336000			55527	6016	40412	40738	54245	54245					-0.08127450752022014
TSDGRGGPRW	10	Unmodified	_TSDGRGGPRW_					0	0	0			REV__ENST00000216733.7_1_14:23834263-23834767:-|nuORF	REV__ENST00000216733.7_1_14:23834263-23834767:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	545.165283203125	2	544.765229	1087.5159	-0.3645	-0.00019857	0.83077	0.00045258	0.46627	0.00025401	544.7655642991498	45.73	0.80968	45.73	45.284	46.094	0					31	15	4	0	0	0	0.50967	1	16021	16021		27.629	27.629	1	4735100	+		55528	23038	40413	40739	54246	54246					-0.02435268133194768
TSDGRGGPRW	10	Unmodified	_TSDGRGGPRW_					0	0	0			REV__ENST00000216733.7_1_14:23834263-23834767:-|nuORF	REV__ENST00000216733.7_1_14:23834263-23834767:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	545.1652221679688	2	544.765229	1087.5159	-0.9198	-0.00050108	1.0208	0.00055612	0.10105	5.5046E-05	544.7656822085257	44.993	0.81464	45.762	45.34	46.154	0.7691					29	15	3	0	0	0	0.50967	1	16790	16790		27.629	27.629	1	3674900	+		55529	23038	40413	40739	54247	54247					-0.02435268133194768
TSDGRGGPRW	10	Unmodified	_TSDGRGGPRW_					0	0	0			REV__ENST00000216733.7_1_14:23834263-23834767:-|nuORF	REV__ENST00000216733.7_1_14:23834263-23834767:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	544.765229	1087.5159	-0.3645	-0.00019857	0.83077	0.00045258	0.46627	0.00025401	544.7655642991498	45.73	0.80968	45.73	45.284	46.094	0	-0.016271	-0.00010191	NaN	27.629	31	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4735100	+		55530	23038	40413	40739							-0.02435268133194768
TSDGRGGPRW	10	Unmodified	_TSDGRGGPRW_					0	0	0			REV__ENST00000216733.7_1_14:23834263-23834767:-|nuORF	REV__ENST00000216733.7_1_14:23834263-23834767:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	544.765229	1087.5159	-0.9198	-0.00050108	1.0208	0.00055612	0.10105	5.5046E-05	544.7656822085257	44.993	0.81464	45.762	45.34	46.154	0.7691	0.016271	0.00010518	NaN	27.629	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3674900	+		55531	23038	40413	40739							-0.02435268133194768
TSDHDFAIV	9	Unmodified	_TSDHDFAIV_					0	0	0			REV__ENST00000546153.1_1_12:10339004-10342736:+|nuORF	REV__ENST00000546153.1_1_12:10339004-10342736:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	503.16119384765625	2	502.737814	1003.46108	-0.20736	-0.00010425	-0.043493	-2.1866E-05	-0.25086	-0.00012611	502.7377637827076	35.462	0.40723	35.462	35.218	35.625	0					11	7	2	0	0	0	0.47368	1	11802	11802		20.454	5.6154	1	1330000	+		55532	20612	40414	40740	54248	54248					-0.040516997244708364
TSDHDFAIV	9	Unmodified	_TSDHDFAIV_					0	0	0			REV__ENST00000546153.1_1_12:10339004-10342736:+|nuORF	REV__ENST00000546153.1_1_12:10339004-10342736:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1848449707031	2	502.737814	1003.46108	-0.82768	-0.0004161	-0.21695	-0.00010907	-1.0446	-0.00052518	502.7377830222198	34.7	0.40468	35.463	35.273	35.677	0.76338					11	7	2	0	0	0	0.47368	1	12504	12504		14.838	0	1	1907500	+		55533	20612	40414	40740	54249	54249					-0.040516997244708364
TSDHDGKDNY	10	Unmodified	_TSDHDGKDNY_					0	0	0		ENSG00000197410|ENST00000357232|DCHS2	ENSG00000197410|ENST00000357232|DCHS2	ENSG00000197410|ENST00000357232|DCHS2	MULTI-MSMS	A375_MHC_IP_R1	1	576.6343383789062	2	576.233624	1150.4527	-0.096885	-5.5829E-05	1.8802	0.0010835	1.7834	0.0010276	576.234208267615	43.508	0.55895	43.508	43.249	43.808	0					18	10	2	0	0	0	0.47255	1	15143	15143		29.841	3.5724	1	3151500			55534	9153	40415	40741	54250	54250					-0.11651298431752366
TSDHFETIMKY	11	Unmodified	_TSDHFETIMKY_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	A375_MHC_IP_R1	1	458.61407470703125	3	457.879827	1370.61765	-0.12207	-5.5891E-05	0.30841	0.00014122	0.18635	8.5326E-05	458.21417709633533	53.741	0.508	53.741	53.505	54.013	0					18	9	3	0	0	0	0.43294	1	19195	19195		25.438	19.204	1	3328500			55535	4801	40416	40742	54251	54251					-0.05283202616305971
TSDHFETIMKY	11	Unmodified	_TSDHFETIMKY_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-SECPEP	A375_MHC_IP_R2	2	458.27923583984375	3	457.879827	1370.61765	-0.86863	-0.00039773	0.024201	1.1081E-05	-0.84443	-0.00038665	457.87979772631405	53.041	0.45621	53.792	53.538	53.995	0.75105					12	8	2	0	0	0	0.74871	1	20009	20009		29.291	20.048	1	2729900			55536	4801	40416	40742	54252	54252					-0.05283202616305971
TSDIPETTY	9	Unmodified	_TSDIPETTY_					0	0	0		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	514.1820678710938	2	513.734937	1025.45532	-0.91429	-0.0004697	0.85408	0.00043877	-0.060213	-3.0934E-05	513.7351323997635	50.42	0.50788	51.174	50.904	51.412	0.75406					14	9	2	0	0	0	0.58271	1	18921	18921		10.074	0	1	1468400			55537	2645	40417	40743	54253	54253					-0.05638843026781615
TSDKDIFYSA	10	Unmodified	_TSDKDIFYSA_					0	0	0			REV__BRINP3|p.R188K|2|0.26|ENSG00000162670|chr1:190264920-190264920|C/T|missense_variant	REV__BRINP3|p.R188K|2|0.26|ENSG00000162670|chr1:190264920-190264920|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	574.1691284179688	2	573.769311	1145.52407	-0.12336	-7.0781E-05	-0.26137	-0.00014996	-0.38473	-0.00022075	573.7692137302139	53.732	0.45856	53.732	53.453	53.912	0					14	8	2	0	0	0	0.33265	1	19177	19177		38.176	5.3899	1	3323400	+		55538	15531	40418	40744	54254	54254					-0.042871787270769346
TSDKKDSFYTD	11	Unmodified	_TSDKKDSFYTD_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MULTI-SECPEP	A375_MHC_IP_R1	1	654.1931762695312	2	653.793514	1305.57248	-0.64659	-0.00042274	0.16166	0.00010569	-0.48493	-0.00031705	653.7935167199228	32.53	0.50343	32.53	32.333	32.836	0					23	9	4	0	0	0	0.73984	1	10515	10515		36.506	14.969	1	11583000			55539	3006	40419	40745	54255	54255					-0.06808729877843689
TSDKKHVAHF	10	Unmodified	_TSDKKHVAHF_					0	0	0		ENST00000321248.4_1_10:134261270-134261444:+|nuORF	ENST00000321248.4_1_10:134261270-134261444:+|nuORF	ENST00000321248.4_1_10:134261270-134261444:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	585.7059326171875	2	585.306729	1168.59891	-0.26835	-0.00015707	-0.3805	-0.00022271	-0.64885	-0.00037978	585.3059532445467	31.414	0.40529	31.414	31.211	31.616	0					19	7	3	0	0	0	0.81654	1	10055	10055		30.637	5.6456	1	7533400			55540	10697	40420	40746	54256	54256					0.02135048594800537
TSDKLYECKKC	11	Unmodified	_TSDKLYECKKC_					0	0	0		ENSG00000120784|ENST00000684514|ZFP30	ENSG00000120784|ENST00000684514|ZFP30	ENSG00000120784|ENST00000684514|ZFP30	MULTI-MSMS	A375_MHC_IP_R2	2	660.2127685546875	2	659.312506	1316.61046	-1.2183	-0.00080325	-0.51441	-0.00033916	-1.7327	-0.0011424	659.3122351584047	19.961	0.96435	20.571	20.044	21.008	0.61029					39	18	3	0	0	0	0.73332	2	6088	6088;6105		5.7319	5.7319	1	2069900			55541	3687	40421	40747	54257;54258	54257					-0.03518258488384163
TSDKPLMY	8	Oxidation (M)	_TSDKPLM(Oxidation (M))Y_		TSDKPLM(1)Y		TSDKPLM(92)Y	0	0	1		ENSG00000157741|ENST00000473989|UBN2	ENSG00000157741|ENST00000473989|UBN2	ENSG00000157741|ENST00000473989|UBN2	MULTI-MSMS	A375_MHC_IP_R1	1	486.1308288574219	2	485.731143	969.447733	-0.66429	-0.00032267	0.20927	0.00010165	-0.45502	-0.00022102	485.73119169995925	29.438	0.71046	29.438	28.845	29.555	0					34	13	3	0	0	0	0.11362	1	9035	9035		92.491	46.47	1	11615000			55542	6263	40422	40748	54259	54259		336			-0.03821273828066296
TSDLFRTKSKS	11	Unmodified	_TSDLFRTKSKS_					0	0	0		nc|ENSG00000152240|Q96CS2-2|HAUS1;ENSG00000152240|ENST00000282058|HAUS1	nc|ENSG00000152240|Q96CS2-2|HAUS1	nc|ENSG00000152240|Q96CS2-2|HAUS1	MULTI-MSMS	A375_MHC_IP_R2	2	424.6140441894531	3	423.898098	1268.67246	-0.41768	-0.00017705	-0.19407	-8.2268E-05	-0.61175	-0.00025932	423.89799709082826	18.905	0.36019	19.508	19.423	19.783	0.60308					16	8	3	0	0	0	0.72713	1	5800	5800		11.631	0.56609	1	11432000			55543	5955	40423	40749	54260	54260					0.04887552246600535
TSDLIKEFNMY	11	Unmodified	_TSDLIKEFNMY_					0	0	0			REV__ENST00000238112.7_1_2:9613154-9613199:+|nuORF	REV__ENST00000238112.7_1_2:9613154-9613199:+|nuORF	MSMS	A375_MHC_IP_R2	2	680.724365234375	2	680.826303	1359.63805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.7	1	103.47	102.97	103.97	0.76428								0	0	0	0.16108	1	38908	38908		13.042	3.6593	1		+		55544	23089	40424	40750	54261	54261					-0.027380319564827005
TSDLKKPTALP	11	Unmodified	_TSDLKKPTALP_					0	0	0			REV__ENSG00000157741|ENST00000473989|UBN2	REV__ENSG00000157741|ENST00000473989|UBN2	MULTI-SECPEP	A375_MHC_IP_R1	1	391.2959289550781	3	390.895806	1169.66559	0.56045	0.00021908	-0.079728	-3.1165E-05	0.48072	0.00018791	390.89560117395865	38.985	0.40669	38.985	38.78	39.187	0					14	7	3	0	0	0	0.99625	1	13326	13326		4.7159	0	1	2261000	+		55545	20040	40425	40751	54262	54262					0.08754239366044203
TSDLKKPTALP	11	Unmodified	_TSDLKKPTALP_					0	0	0			REV__ENSG00000157741|ENST00000473989|UBN2	REV__ENSG00000157741|ENST00000473989|UBN2	MULTI-MATCH	A375_MHC_IP_R2	2		3	390.895806	1169.66559	-0.45168	-0.00017656	0.40148	0.00015694	-0.050209	-1.9627E-05	390.89587491622234	38.113	0.30831	38.888	38.739	39.047	0.77451	-0.048801	0.00035682	NaN	4.7159	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2644300	+		55546	20040	40425	40751							0.08754239366044203
TSDLPQWTR	9	Unmodified	_TSDLPQWTR_					0	0	0			REV__ENST00000389793.6_1_1:235993542-235993656:-|nuORF	REV__ENST00000389793.6_1_1:235993542-235993656:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1484985351562	2	552.277638	1102.54072	-1.006	-0.0005556	-2.4189	-0.0013359	-3.4249	-0.0018915	552.2753672182894	37.938	0.76761	38.713	38.483	39.25	0.77451					17	14	2	0	0	0	0.75466	1	13821	13821		4.3292	0	1	2696100	+		55547	24256	40426	40752	54263	54263					-0.0064463305047866015
TSDLQDKNEY	10	Unmodified	_TSDLQDKNEY_					0	0	0		ENSG00000075188|ENST00000552283|NUP37;ENST00000551200.5_1_12:102471044-102512308:-|nuORF	ENSG00000075188|ENST00000552283|NUP37	ENSG00000075188|ENST00000552283|NUP37	MULTI-SECPEP	A375_MHC_IP_R1	1	607.1725463867188	2	606.772582	1211.53061	-0.6064	-0.00036794	0.90693	0.0005503	0.30054	0.00018236	606.7729152653026	23.762	0.30476	23.762	23.635	23.94	0					9	5	3	0	0	0	0.63289	1	6631	6631		40.725	14.704	1	4910900			55548	1601	40427	40753	54264	54264					-0.06669285566363214
TSDLQDKNEY	10	Unmodified	_TSDLQDKNEY_					0	0	0		ENSG00000075188|ENST00000552283|NUP37;ENST00000551200.5_1_12:102471044-102512308:-|nuORF	ENSG00000075188|ENST00000552283|NUP37	ENSG00000075188|ENST00000552283|NUP37	MULTI-MATCH	A375_MHC_IP_R2	2		2	606.772582	1211.53061	-0.73564	-0.00044636	-0.22896	-0.00013893	-0.9646	-0.00058529	606.7723966115424	23.1	0.20435	23.73	23.623	23.828	0.63014	-0.016008	-0.0010724	NaN	47.732	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1375900			55549	1601	40427	40753							-0.06669285566363214
TSDLQLSTY	9	Unmodified	_TSDLQLSTY_					0	0	0		ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	MULTI-MSMS	A375_MHC_IP_R1	1	514.65087890625	2	514.250754	1026.48696	-0.86739	-0.00044606	0.45139	0.00023213	-0.41601	-0.00021393	514.2508975485944	67.646	0.55623	67.646	67.348	67.904	0					20	10	3	0	0	0	0.054426	1	24523	24523		62.573	14.824	1	1891200			55550	1514	40428	40754	54265	54265					-0.025228502728623425
TSDLQLSTY	9	Unmodified	_TSDLQLSTY_					0	0	0		ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	MULTI-MSMS	A375_MHC_IP_R2	2	514.6583862304688	2	514.250754	1026.48696	-0.81469	-0.00041896	-0.55042	-0.00028305	-1.3651	-0.00070201	514.2504252783796	67.054	0.50613	67.791	67.445	67.951	0.73631					20	9	3	0	0	0	0.033557	1	25411	25411		71.922	28.064	1	1445700			55551	1514	40428	40754	54266	54266					-0.025228502728623425
TSDLSHFFH	9	Unmodified	_TSDLSHFFH_					0	0	0			REV__OR12D2|p.G106D|1|0.4|ENSG00000280236|chr6:29397016-29397016|G/A|missense_variant	REV__OR12D2|p.G106D|1|0.4|ENSG00000280236|chr6:29397016-29397016|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	545.165283203125	2	545.751256	1089.48796	-0.31899	-0.00017409	1.4649	0.00079948	1.1459	0.00062539	545.7517536122064	45.705	0.96148	45.705	45.03	45.992	0					27	18	2	0	0	0	0.55359	1	16021	16021		28.487	5.3384	1	2686600	+		55552	27652	40429	40755	54267	54267					-0.053205911132636174
TSDNGKDGLAY	11	Unmodified	_TSDNGKDGLAY_					0	0	0		nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1;FZR1|p.G376Rfs*4|1|0.37|ENSG00000105325|chr19:3532526-3532527|-/G|frameshift_variant	nc|ENSG00000105325|Q9UM11-3|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	MULTI-MSMS	A375_MHC_IP_R1	1	571.1618041992188	2	570.762017	1139.50948	-0.43319	-0.00024725	0.093126	5.3153E-05	-0.34006	-0.0001941	570.7620959147122	28.13	0.65452	28.13	27.887	28.541	0					36	12	4	0	0	0	3.9575E-07	1	8628	8628		153.7	98.196	1	56445000			55553	2590	40430	40756	54268	54268					-0.05469250875239595
TSDNGKDGLAY	11	Unmodified	_TSDNGKDGLAY_					0	0	0		nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1;FZR1|p.G376Rfs*4|1|0.37|ENSG00000105325|chr19:3532526-3532527|-/G|frameshift_variant	nc|ENSG00000105325|Q9UM11-3|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	MULTI-MSMS	A375_MHC_IP_R2	2	571.1617431640625	2	570.762017	1139.50948	-0.25807	-0.0001473	-0.17629	-0.00010062	-0.43436	-0.00024792	570.7619421725932	27.547	0.81182	28.225	27.996	28.808	0.67857					39	15	4	0	0	0	2.5866E-05	1	9404	9404		142.94	87.438	1	46185000			55554	2590	40430	40756	54269	54269					-0.05469250875239595
TSDNLGSAAMY	11	Unmodified	_TSDNLGSAAMY_					0	0	0			REV__nc|ENSG00000173175|O95622-2|ADCY5	REV__nc|ENSG00000173175|O95622-2|ADCY5	MULTI-SECPEP	A375_MHC_IP_R1	1	377.9535217285156	3	377.165856	1128.47574	0.34152	0.00012881	0.7371	0.00027801	1.0786	0.00040682	377.1660129860185	25.041	0.25157	25.041	24.903	25.154	0					6	4	2	0	0	0	0.98748	1	7284	7284		4.4062	0.81909	1	1342200	+		55555	21200	40431	40757	54270	54270					-0.0833599563864027
TSDPGPVLEAE	11	Unmodified	_TSDPGPVLEAE_					0	0	0			REV__ENST00000394540.3_1_11:64009493-64010699:+|nuORF	REV__ENST00000394540.3_1_11:64009493-64010699:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	557.714599609375	2	557.766768	1113.51898	-0.83992	-0.00046848	-0.21296	-0.00011878	-1.0529	-0.00058726	557.7664656902768	44.954	1.3688	45.723	45.39	46.759	0.7691					62	26	4	0	0	0	0.60747	1	17091	17091		22.736	0	1	17543000	+		55556	24310	40432	40758	54271	54271					-0.033234825897352493
TSDPIQQLY	9	Unmodified	_TSDPIQQLY_					0	0	0			REV__ENST00000481482.5_1_7:138818528-138853308:+|nuORF	REV__ENST00000481482.5_1_7:138818528-138853308:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	532.1821899414062	2	532.766571	1063.51859	-0.8261	-0.00044012	1.484	0.00079063	0.6579	0.00035051	532.7669559486375	44.974	0.66234	45.743	45.289	45.951	0.76909					16	12	2	0	0	0	0.50702	1	16784	16784		19.257	0	1	1437400	+		55557	17420	40433	40759	54272	54272					-0.010628575188775358
TSDPLETPAPS	11	Unmodified	_TSDPLETPAPS_					0	0	0		ENSG00000074855|ENST00000159087|ANO8;ENST00000597643.5_1_19:17434328-17439993:-|nuORF	ENSG00000074855|ENST00000159087|ANO8	ENSG00000074855|ENST00000159087|ANO8	MULTI-MSMS	A375_MHC_IP_R2	2	557.716064453125	2	557.766768	1113.51898	-0.83992	-0.00046848	-0.21296	-0.00011878	-1.0529	-0.00058726	557.7664656902768	44.954	1.3688	45.723	45.39	46.759	0.7691					62	26	4	0	0	0	0.36362	1	16940	16940		41.84	7.4379	1	17543000			55558	1595	40434	40760	54273	54273					-0.03323482589712512
TSDQKLWEE	9	Unmodified	_TSDQKLWEE_					0	0	0		nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	MULTI-MSMS	A375_MHC_IP_R1	1	568.6549682617188	2	568.266936	1134.51932	-0.26637	-0.00015137	0.32122	0.00018254	0.054851	3.117E-05	568.266784035248	23.07	0.15039	23.07	22.974	23.125	0					4	2	2	0	0	0	0.077132	1	6277	6277		54.774	10.915	1	930280			55559	1498	40435	40761	54274	54274					-0.042560628698538494
TSDQKLWEE	9	Unmodified	_TSDQKLWEE_					0	0	0		nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	MULTI-SECPEP	A375_MHC_IP_R2	2	568.1292114257812	2	568.266936	1134.51932	-0.68915	-0.00039162	0.232	0.00013184	-0.45716	-0.00025979	568.2670525352348	20.861	0.35615	21.471	21.21	21.566	0.61029					8	6	2	0	0	0	0.61758	1	6489	6489		29.082	3.6823	1	522430			55560	1498	40435	40761	54275	54275					-0.042560628698538494
TSDQLAYVP	9	Unmodified	_TSDQLAYVP_					0	0	0			REV__nc|ENSG00000107731|Q8IZJ1-2|UNC5B	REV__nc|ENSG00000107731|Q8IZJ1-2|UNC5B	MULTI-MSMS	A375_MHC_IP_R1	1	497.978759765625	2	497.248015	992.481476	-0.045503	-2.2626E-05	3.7608	0.0018701	3.7153	0.0018474	497.25039842767546	22.103	0.30478	22.103	21.911	22.216	0					6	5	2	0	0	0	0.5339	1	5882	5882		18.135	2.2878	1	371180	+		55561	17493	40436	40762	54276	54276					-0.015065290646589347
TSDQRYVLY	9	Unmodified	_TSDQRYVLY_					0	0	0		ENSG00000213614|ENST00000268097|HEXA;ENST00000563908.1_1_15:72647792-72668286:-|nuORF	ENSG00000213614|ENST00000268097|HEXA	ENSG00000213614|ENST00000268097|HEXA	MULTI-SECPEP	A375_MHC_IP_R2	2	573.1856689453125	2	572.785296	1143.55604	-0.43205	-0.00024747	2.0587	0.0011792	1.6267	0.00093175	572.7871062194631	50.349	0.60798	51.103	50.753	51.361	0.75406					18	11	2	0	0	0	0.67539	1	18978	18978		16.149	3.6176	1	1927400			55562	9574	40437	40763	54277	54277					-0.009997662532896356
TSDQRYVLY	9	Unmodified	_TSDQRYVLY_					0	0	0		ENSG00000213614|ENST00000268097|HEXA;ENST00000563908.1_1_15:72647792-72668286:-|nuORF	ENSG00000213614|ENST00000268097|HEXA	ENSG00000213614|ENST00000268097|HEXA	MULTI-MATCH	A375_MHC_IP_R1	1		2	572.785296	1143.55604	-0.17933	-0.00010272	0.37672	0.00021578	0.19738	0.00011306	572.7854522514884	51.043	0.61033	51.043	50.814	51.424	0	-0.03008	-0.00016954	NaN	16.149	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1718600			55563	9574	40437	40763							-0.009997662532896356
TSDSAFIYN	9	Unmodified	_TSDSAFIYN_					0	0	0			REV__nc|ENSG00000168803|Q6DHV7-3|ADAL	REV__nc|ENSG00000168803|Q6DHV7-3|ADAL	MULTI-MSMS	A375_MHC_IP_R2	2	509.62939453125	2	509.229822	1016.44509	-1.1036	-0.00056199	0.69232	0.00035255	-0.41128	-0.00020944	509.22979841135805	38.357	0.40569	39.132	38.895	39.3	0.77451					16	7	3	0	0	0	0.55471	1	14150	14150		17.113	0	1	2780800	+		55564	20887	40438	40764	54278	54278					-0.06247405961369168
TSDSAFIYN	9	Unmodified	_TSDSAFIYN_					0	0	0			REV__nc|ENSG00000168803|Q6DHV7-3|ADAL	REV__nc|ENSG00000168803|Q6DHV7-3|ADAL	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	509.229822	1016.44509	-0.11422	-5.8167E-05	-0.14189	-7.2252E-05	-0.25611	-0.00013042	509.22955786631104	39.103	0.4571	39.103	38.832	39.289	0	-0.014657	-0.00026475	NaN	17.113	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2230300	+		55565	20887	40438	40764							-0.06247405961369168
TSDSAFIYN	9	Unmodified	_TSDSAFIYN_					0	0	0			REV__nc|ENSG00000168803|Q6DHV7-3|ADAL	REV__nc|ENSG00000168803|Q6DHV7-3|ADAL	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	509.229822	1016.44509	-1.1036	-0.00056199	0.69232	0.00035255	-0.41128	-0.00020944	509.22979841135805	38.357	0.40569	39.132	38.895	39.3	0.77451	0.014657	0.00058486	NaN	17.113	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2780800	+		55566	20887	40438	40764							-0.06247405961369168
TSDSFVKGY	9	Unmodified	_TSDSFVKGY_					0	0	0		nc|ENSG00000147041|Q8TDW5-2|SYTL5;ENSG00000147041|ENST00000297875|SYTL5;ENSG00000102362|ENST00000372989|SYTL4	nc|ENSG00000147041|Q8TDW5-2|SYTL5	nc|ENSG00000147041|Q8TDW5-2|SYTL5	MULTI-MSMS	A375_MHC_IP_R1	1	501.69232177734375	2	502.24019	1002.46583	-0.086474	-4.3431E-05	-0.24017	-0.00012062	-0.32664	-0.00016405	502.2400225646283	39.099	0.96365	39.099	38.78	39.744	0					45	18	4	0	0	0	0.0092471	2	13353	13272;13353		118.07	63.295	1	42306000			55567	5650	40439	40765	54279;54280	54280					-0.03530815581700608
TSDSFVKGY	9	Unmodified	_TSDSFVKGY_					0	0	0		nc|ENSG00000147041|Q8TDW5-2|SYTL5;ENSG00000147041|ENST00000297875|SYTL5;ENSG00000102362|ENST00000372989|SYTL4	nc|ENSG00000147041|Q8TDW5-2|SYTL5	nc|ENSG00000147041|Q8TDW5-2|SYTL5	MULTI-MSMS	A375_MHC_IP_R2	2	502.1383972167969	2	502.24019	1002.46583	-0.97705	-0.00049072	0.018672	9.378E-06	-0.95838	-0.00048134	502.2401573825859	38.299	0.86665	39.073	38.791	39.658	0.77451					44	16	4	0	0	0	0.0014143	3	14064	14058;14064;14086		149.91	91.235	1	49153000			55568	5650	40439	40765	54281;54282;54283	54282					-0.03530815581700608
TSDSLRLSW	9	Unmodified	_TSDSLRLSW_					0	0	0		TNXB|p.P1687S|1|0.29|ENSG00000168477|chr6:32070346-32070346|G/A|missense_variant	TNXB|p.P1687S|1|0.29|ENSG00000168477|chr6:32070346-32070346|G/A|missense_variant	TNXB|p.P1687S|1|0.29|ENSG00000168477|chr6:32070346-32070346|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	533.129638671875	2	532.772188	1063.52982	-0.96955	-0.00051655	0.50619	0.00026968	-0.46335	-0.00024686	532.7722265702818	38.293	0.66393	38.293	37.862	38.526	0					30	12	4	0	0	0	0.69504	1	12896	12896		12.532	0	1	6030700			55569	29374	40440	40766	54284	54284					0.0005996457523451681
TSDSLRLSW	9	Unmodified	_TSDSLRLSW_					0	0	0		TNXB|p.P1687S|1|0.29|ENSG00000168477|chr6:32070346-32070346|G/A|missense_variant	TNXB|p.P1687S|1|0.29|ENSG00000168477|chr6:32070346-32070346|G/A|missense_variant	TNXB|p.P1687S|1|0.29|ENSG00000168477|chr6:32070346-32070346|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	533.1292724609375	2	532.772188	1063.52982	-0.96077	-0.00051187	0.050131	2.6708E-05	-0.91064	-0.00048516	532.7720005203981	37.663	0.46099	38.437	38.175	38.636	0.77451					14	8	2	0	0	0	0.69504	1	13686	13686		12.532	1.7076	1	3741200			55570	29374	40440	40766	54285	54285					0.0005996457523451681
TSDSPPSNEEE	11	Unmodified	_TSDSPPSNEEE_					0	0	0			REV__ENSG00000145996|ENST00000274695|CDKAL1	REV__ENSG00000145996|ENST00000274695|CDKAL1	MULTI-SECPEP	A375_MHC_IP_R1	1	596.636474609375	2	596.236029	1190.45751	-0.20811	-0.00012408	0.75429	0.00044973	0.54617	0.00032565	596.2365127814656	69.003	0.55751	69.003	68.666	69.224	0					17	10	2	0	0	0	0.85086	1	25017	25017		28.495	4.4739	1	2106400	+		55571	19510	40441	40767	54286	54286					-0.13010459079623615
TSDSTVYDY	9	Unmodified	_TSDSTVYDY_					0	0	0		ENSG00000115944|ENST00000234301|COX7A2L;ENST00000464443.5_1_2:42578361-42588194:-|nuORF	ENSG00000115944|ENST00000234301|COX7A2L	ENSG00000115944|ENST00000234301|COX7A2L	MULTI-MSMS	A375_MHC_IP_R1	1	1050.8258056640625	1	1050.42621	1049.41894	0.03905	4.1019E-05	-0.26313	-0.0002764	-0.22408	-0.00023538	1050.4261246154206	46.615	1.3729	46.615	46.094	47.467	0					65	26	4	0	0	0	0.040308	1	16578	16578		68.081	25.986	1	53542000			55572	3353	40442	40768	54287	54287					-0.10379719923503217
TSDSTVYDY	9	Unmodified	_TSDSTVYDY_					0	0	0		ENSG00000115944|ENST00000234301|COX7A2L;ENST00000464443.5_1_2:42578361-42588194:-|nuORF	ENSG00000115944|ENST00000234301|COX7A2L	ENSG00000115944|ENST00000234301|COX7A2L	MULTI-MSMS	A375_MHC_IP_R2	2	525.6849365234375	2	525.716744	1049.41894	-0.41398	-0.00021764	-1.0667	-0.00056076	-1.4806	-0.00077839	525.7166493409577	46.015	1.0129	46.78	46.403	47.416	0.76519					30	19	2	0	0	0	0.12592	1	17226	17226		46.021	6.0636	1	5728400			55573	3353	40442	40768	54288	54288					-0.10379719923503217
TSDSTVYDY	9	Unmodified	_TSDSTVYDY_					0	0	0		ENSG00000115944|ENST00000234301|COX7A2L;ENST00000464443.5_1_2:42578361-42588194:-|nuORF	ENSG00000115944|ENST00000234301|COX7A2L	ENSG00000115944|ENST00000234301|COX7A2L	MULTI-MATCH	A375_MHC_IP_R2	2		1	1050.42621	1049.41894	0.11606	0.00012192	-0.25994	-0.00027304	-0.14387	-0.00015113	1050.4260321958398	46.029	1.1636	46.794	46.353	47.517	0.76519	0.089715	1.8818E-06	NaN	68.081	60	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48045000			55574	3353	40442	40768							-0.10379719923503217
TSDSVPLIAQY	11	Unmodified	_TSDSVPLIAQY_					0	0	0		ENSG00000166664|ENST00000299847|CHRFAM7A;ENSG00000175344|ENST00000306901|CHRNA7;nc|ENSG00000175344|P36544-2|CHRNA7	ENSG00000166664|ENST00000299847|CHRFAM7A	ENSG00000166664|ENST00000299847|CHRFAM7A	MULTI-SECPEP	A375_MHC_IP_R1	1	596.636474609375	2	597.306061	1192.59757	-0.27219	-0.00016258	-0.68999	-0.00041214	-0.96218	-0.00057472	597.8058295098616	68.876	0.50642	68.876	68.666	69.173	0					14	9	3	0	0	0	0.95991	1	25017	25017		18.146	2.2992	1	1363500			55575	7097	40443	40769	54289	54289					0.008973697153805915
TSDTLLSYIY	10	Unmodified	_TSDTLLSYIY_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	A375_MHC_IP_R2	2	588.6954956054688	2	588.295162	1174.57577	-1.0183	-0.00059907	0.74721	0.00043958	-0.2711	-0.00015949	588.2955921710358	25.559	0.6092	26.219	25.992	26.602	0.65992					14	11	2	0	0	0	0.51963	1	8599	8599		26.884	12.045	1	2676300	+		55576	22403	40444	40770	54290	54290					-0.004534350331823589
TSDTLNNVGY	10	Unmodified	_TSDTLNNVGY_					0	0	0		ENST00000483443.1_1_2:238664770-238678725:+|nuORF;ENSG00000124831|ENST00000308482|LRRFIP1;nc|ENSG00000124831|Q32MZ4-3|LRRFIP1;nc|ENSG00000124831|Q32MZ4-2|LRRFIP1;nc|ENSG00000124831|Q32MZ4|LRRFIP1	ENST00000483443.1_1_2:238664770-238678725:+|nuORF	ENST00000483443.1_1_2:238664770-238678725:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	542.6514892578125	2	542.251286	1082.48802	-0.50204	-0.00027223	0.48081	0.00026072	-0.021231	-1.1513E-05	542.2515987894603	52.008	0.55813	52.008	51.778	52.336	0					18	10	2	0	0	0	0.050548	1	18475	18475		75.761	29.74	1	2730600			55577	3937	40445	40771	54291	54291					-0.04992635903931841
TSDTLNNVGY	10	Unmodified	_TSDTLNNVGY_					0	0	0		ENST00000483443.1_1_2:238664770-238678725:+|nuORF;ENSG00000124831|ENST00000308482|LRRFIP1;nc|ENSG00000124831|Q32MZ4-3|LRRFIP1;nc|ENSG00000124831|Q32MZ4-2|LRRFIP1;nc|ENSG00000124831|Q32MZ4|LRRFIP1	ENST00000483443.1_1_2:238664770-238678725:+|nuORF	ENST00000483443.1_1_2:238664770-238678725:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	542.65087890625	2	542.251286	1082.48802	-1.0281	-0.00055751	1.0611	0.0005754	0.032993	1.789E-05	542.2513954515334	51.477	0.6095	52.23	51.864	52.473	0.75225					23	11	3	0	0	0	0.2347	1	19368	19368		45.7	18.816	1	2284300			55578	3937	40445	40771	54292	54292					-0.04992635903931841
TSDTVQHGAVY	11	Unmodified	_TSDTVQHGAVY_					0	0	0		ENSG00000143751|ENST00000272091|SDE2	ENSG00000143751|ENST00000272091|SDE2	ENSG00000143751|ENST00000272091|SDE2	MULTI-SECPEP	A375_MHC_IP_R1	1	589.708740234375	2	589.277835	1176.54112	-0.62923	-0.00037079	0.16106	9.4907E-05	-0.46817	-0.00027588	589.2779790983152	26.175	0.35572	26.175	26.068	26.423	0					12	6	3	0	0	0	0.25959	1	7744	7744		53.317	32.863	1	3308500			55579	5429	40446	40772	54293	54293					-0.04009258121277526
TSDTVQHGAVY	11	Unmodified	_TSDTVQHGAVY_					0	0	0		ENSG00000143751|ENST00000272091|SDE2	ENSG00000143751|ENST00000272091|SDE2	ENSG00000143751|ENST00000272091|SDE2	MULTI-MSMS	A375_MHC_IP_R2	2	589.6773681640625	2	589.277835	1176.54112	-1.021	-0.00060166	0.17892	0.00010544	-0.84208	-0.00049622	589.2778596326567	25.662	0.40695	26.321	26.144	26.551	0.65992					11	7	2	0	0	0	0.00028898	2	8613	8592;8613		124.95	70.179	1	5141200			55580	5429	40446	40772	54294;54295	54295					-0.04009258121277526
TSDVDEWAAA	10	Unmodified	_TSDVDEWAAA_					0	0	0			REV__ENST00000581517.1_1_17:71159284-71159497:-|nuORF	REV__ENST00000581517.1_1_17:71159284-71159497:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	532.1219482421875	2	532.730186	1063.44582	-0.97063	-0.00051708	0.37128	0.00019779	-0.59935	-0.00031929	532.7301885213521	38.139	0.61148	38.139	37.812	38.423	0					23	10	3	0	0	0	0.60556	1	12912	12912		20.454	5.6154	1	9973800	+		55581	26351	40447	40773	54296	54296					-0.08336611312324749
TSDVDEWAAA	10	Unmodified	_TSDVDEWAAA_					0	0	0			REV__ENST00000581517.1_1_17:71159284-71159497:-|nuORF	REV__ENST00000581517.1_1_17:71159284-71159497:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	533.129638671875	2	532.730186	1063.44582	-0.97063	-0.00051708	0.37128	0.00019779	-0.59935	-0.00031929	532.7301885213521	38.139	0.61148	38.139	37.812	38.423	0					23	10	3	0	0	0	0.87163	1	12896	12896		19.257	0	1	9973800	+		55582	26351	40447	40773	54297	54297					-0.08336611312324749
TSDVDEWAAA	10	Unmodified	_TSDVDEWAAA_					0	0	0			REV__ENST00000581517.1_1_17:71159284-71159497:-|nuORF	REV__ENST00000581517.1_1_17:71159284-71159497:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	533.129150390625	2	532.730186	1063.44582	-1.105	-0.00058866	-0.18523	-9.8677E-05	-1.2902	-0.00068734	532.7299783999888	37.41	0.56194	38.181	37.917	38.479	0.7709					23	10	3	0	0	0	0.87163	1	13698	13698		19.257	0	1	7457900	+		55583	26351	40447	40773	54298	54298					-0.08336611312324749
TSDVDLDKY	9	Unmodified	_TSDVDLDKY_					0	0	0		ENST00000564709.5_1_16:1827100-1828401:-|nuORF;ENSG00000162032|ENST00000566339|SPSB3;ENST00000569380.5_1_16:1827941-1828049:-|nuORF	ENST00000564709.5_1_16:1827100-1828401:-|nuORF	ENST00000564709.5_1_16:1827100-1828401:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	528.6483764648438	2	528.248212	1054.48187	-0.35006	-0.00018492	-0.042923	-2.2674E-05	-0.39298	-0.00020759	528.2481612215117	39.213	0.65929	39.213	38.882	39.541	0					25	12	3	0	0	0	0.0078574	1	13347	13347		168.54	79.584	1	15975000			55584	6504	40448	40774	54299	54299					-0.04319154135487224
TSDVDLDKY	9	Unmodified	_TSDVDLDKY_					0	0	0		ENST00000564709.5_1_16:1827100-1828401:-|nuORF;ENSG00000162032|ENST00000566339|SPSB3;ENST00000569380.5_1_16:1827941-1828049:-|nuORF	ENST00000564709.5_1_16:1827100-1828401:-|nuORF	ENST00000564709.5_1_16:1827100-1828401:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1055.0479736328125	1	1055.48915	1054.48187	0.32035	0.00033813	0.49296	0.00052031	0.81331	0.00085844	1055.489793122628	39.228	0.25528	39.228	39.085	39.34	0					6	4	2	0	0	0	0.23313	1	13362	13362		57.249	34.513	1	1022000			55585	6504	40448	40774	54300	54300					-0.04319154135487224
TSDVDLDKY	9	Unmodified	_TSDVDLDKY_					0	0	0		ENST00000564709.5_1_16:1827100-1828401:-|nuORF;ENSG00000162032|ENST00000566339|SPSB3;ENST00000569380.5_1_16:1827941-1828049:-|nuORF	ENST00000564709.5_1_16:1827100-1828401:-|nuORF	ENST00000564709.5_1_16:1827100-1828401:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	528.6475830078125	2	528.248212	1054.48187	-0.89871	-0.00047474	-0.14787	-7.8109E-05	-1.0466	-0.00055285	528.2481261084204	38.494	0.55964	39.268	38.997	39.556	0.77451					27	10	3	0	0	0	0.0064781	1	14147	14147		132.38	53.652	1	14627000			55586	6504	40448	40774	54301	54301					-0.04319154135487224
TSDVGGYYY	9	Unmodified	_TSDVGGYYY_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-MSMS	A375_MHC_IP_R1	1	513.1160888671875	2	512.716547	1023.41854	-0.4567	-0.00023416	0.0058434	2.996E-06	-0.45086	-0.00023116	512.7164690434215	59.677	0.81342	59.677	59.295	60.109	0					45	15	4	0	0	0	0.042197	1	21421	21421		67.344	40.46	1	10346000			55587	4343	40449	40775	54302	54302					-0.09223094852711711
TSDVGGYYY	9	Unmodified	_TSDVGGYYY_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-MSMS	A375_MHC_IP_R2	2	513.115966796875	2	512.716547	1023.41854	-1.1526	-0.00059096	-0.056903	-2.9175E-05	-1.2095	-0.00062014	512.7164105462255	59.075	0.91116	59.822	59.438	60.349	0.74714					46	17	4	0	0	0	0.042197	1	22301	22301		67.344	37.119	1	12946000			55588	4343	40449	40775	54303	54303					-0.09223094852711711
TSDYVSQSY	9	Unmodified	_TSDYVSQSY_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MULTI-MSMS	A375_MHC_IP_R2	2	526.1329956054688	2	525.224736	1048.43492	-0.54924	-0.00028848	-0.37551	-0.00019722	-0.92475	-0.0004857	525.2245191243261	40.276	0.70958	41.05	40.676	41.386	0.77451					24	13	3	0	0	0	0.034481	1	14873	14873		71.134	44.25	1	11548000			55589	7484	40450	40776	54304	54304					-0.08736013686598199
TSEALLGLL	9	Unmodified	_TSEALLGLL_					0	0	0			REV__nc|ENSG00000129226|P34810-2|CD68	REV__nc|ENSG00000129226|P34810-2|CD68	MULTI-SECPEP	A375_MHC_IP_R1	1	459.1708984375	2	458.771126	915.527698	0.10758	4.9355E-05	-1.4419	-0.0006615	-1.3343	-0.00061215	458.77051107892515	116.05	0.76253	116.05	115.58	116.34	0					21	14	2	0	0	0	0.3243	1	42562	42562		36.044	0	1	2305900	+		55590	27218	40451	40777	54305	54305					0.06655535837444404
TSEDDSEEDG	10	Unmodified	_TSEDDSEEDG_					0	0	0		ENSG00000136536|ENST00000409175|MARCHF7;nc|ENSG00000136536|Q9H992-2|MARCHF7;ENST00000478396.1_1_2:160615857-160623850:+|nuORF	ENSG00000136536|ENST00000409175|MARCHF7	ENSG00000136536|ENST00000409175|MARCHF7	MSMS	A375_MHC_IP_R2	2	361.6350402832031	3	361.7914	1082.35237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.692	1	19.295	18.795	19.795	0.60308								0	0	0	0.15642	1	5572	5572		0	0	1				55591	4797	40452	40778	54306	54306					-0.18551000276056584
TSEDEQSNY	9	Unmodified	_TSEDEQSNY_					0	0	0		ENSG00000165617|ENST00000395153|DACT1;nc|ENSG00000165617|Q9NYF0|DACT1	ENSG00000165617|ENST00000395153|DACT1	ENSG00000165617|ENST00000395153|DACT1	MSMS	A375_MHC_IP_R1	1	536.649169921875	2	536.706908	1071.39926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.652	1	46.652	46.152	47.152	0								0	0	0	0.15486	1	16380	16380		8.7454	1.1365	1				55592	6970	40453	40779	54307	54307					-0.13358095934268022
TSEDQVQEGTK	11	Unmodified	_TSEDQVQEGTK_					0	0	0		nc|ENSG00000136108|Q8WWK9-6|CKAP2;ENSG00000136108|ENST00000258607|CKAP2;nc|ENSG00000136108|Q8WWK9|CKAP2;nc|ENSG00000136108|Q8WWK9-4|CKAP2;CKAP2|p.S534Rfs*9|1|0.4|ENSG00000136108|chr13:52473881-52473881|T/-|frameshift_variant;CKAP2|p.K571Rfs*5|1|0.26|ENSG00000136108|chr13:52473989-52473990|AA/-|frameshift_variant	nc|ENSG00000136108|Q8WWK9-6|CKAP2	nc|ENSG00000136108|Q8WWK9-6|CKAP2	MULTI-SECPEP	A375_MHC_IP_R2	2	407.3131408691406	3	407.857968	1220.55207	-0.27975	-0.0001141	3.7865	0.0015444	3.5068	0.0014303	407.8592696804099	24.34	0.25396	24.983	24.755	25.009	0.64368					5	4	2	0	0	0	0.99332	1	7913	7913		7.846	3.9697	1	691220			55593	4751	40454	40780	54308	54308					-0.0493790053765224
TSEDRFIQY	9	Unmodified	_TSEDRFIQY_					0	0	0		nc|ENSG00000073417|O60658-6|PDE8A;ENSG00000073417|ENST00000394553|PDE8A	nc|ENSG00000073417|O60658-6|PDE8A	nc|ENSG00000073417|O60658-6|PDE8A	MULTI-SECPEP	A375_MHC_IP_R1	1	580.1748657226562	2	579.774928	1157.5353	-0.070037	-4.0606E-05	0.024006	1.3918E-05	-0.046031	-2.6688E-05	579.7749396569648	51.936	0.3574	51.936	51.728	52.085	0					9	6	2	0	0	0	0.23894	1	18469	18469		40.239	25.834	1	2538100			55594	1561	40455	40781	54309	54309					-0.03716356632935458
TSEDTIHTY	9	Unmodified	_TSEDTIHTY_					0	0	0		VCAN|p.H593Y|1|0.17|ENSG00000038427|chr5:83520083-83520083|C/T|missense_variant	VCAN|p.H593Y|1|0.17|ENSG00000038427|chr5:83520083-83520083|C/T|missense_variant	VCAN|p.H593Y|1|0.17|ENSG00000038427|chr5:83520083-83520083|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	533.6875610351562	2	533.738011	1065.46147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.244	1	40.244	39.744	40.744	0								0	0	0	0.15486	1	13813	13813		7.2892	0.56607	1				55595	30137	40456	40782	54310	54310					-0.0686432479526502
TSEDTIHTY	9	Unmodified	_TSEDTIHTY_					0	0	0		VCAN|p.H593Y|1|0.17|ENSG00000038427|chr5:83520083-83520083|C/T|missense_variant	VCAN|p.H593Y|1|0.17|ENSG00000038427|chr5:83520083-83520083|C/T|missense_variant	VCAN|p.H593Y|1|0.17|ENSG00000038427|chr5:83520083-83520083|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	533.6874389648438	2	533.738011	1065.46147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.475	1	40.25	39.75	40.75	0.77451								0	0	0	0.15486	1	14577	14577		7.2892	0.56607	1				55596	30137	40456	40782	54311	54311					-0.0686432479526502
TSELRWLK	8	Unmodified	_TSELRWLK_					0	0	0			REV__ENST00000577914.1_1_2:122288159-122289962:+|nuORF	REV__ENST00000577914.1_1_2:122288159-122289962:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1759033203125	2	516.795466	1031.57638	-0.5612	-0.00029002	-0.3616	-0.00018688	-0.9228	-0.0004769	516.7952398559054	43.74	0.5041	44.509	44.278	44.782	0.7691					19	9	3	0	0	0	0.90224	1	16351	16351		26.341	11.503	1	6320900	+		55597	26325	40457	40783	54312	54312					0.061854491971644165
TSENPFKDK	9	Unmodified	_TSENPFKDK_					0	0	0		ENSG00000172380|ENST00000370982|GNG12	ENSG00000172380|ENST00000370982|GNG12	ENSG00000172380|ENST00000370982|GNG12	MULTI-MSMS	A375_MHC_IP_R1	1	533.6636352539062	2	533.264196	1064.51384	-0.83611	-0.00044587	1.7207	0.0009176	0.88462	0.00047173	533.2641764952715	27.799	0.80644	27.799	27.432	28.238	0					52	15	5	0	0	0	0.14922	1	8446	8446		41.84	1.8823	1	16502000			55598	7706	40458	40784	54313	54313					-0.015837416616705013
TSEQIWDKG	9	Unmodified	_TSEQIWDKG_					0	0	0		ENST00000553896.5_1_14:24099332-24110898:+|nuORF	ENST00000553896.5_1_14:24099332-24110898:+|nuORF	ENST00000553896.5_1_14:24099332-24110898:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	532.6871337890625	2	532.256371	1062.49819	-0.50443	-0.00026848	-0.31493	-0.00016763	-0.81936	-0.00043611	532.2561350301484	105.61	1.8856	105.61	105.15	107.03	0					106	36	5	0	0	0	0.39388	1	39146	39146		19.257	8.4331	1	99249000			55599	13408	40459	40785	54314	54314					-0.030560281787074928
TSEQIWDKG	9	Unmodified	_TSEQIWDKG_					0	0	0		ENST00000553896.5_1_14:24099332-24110898:+|nuORF	ENST00000553896.5_1_14:24099332-24110898:+|nuORF	ENST00000553896.5_1_14:24099332-24110898:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	532.686767578125	2	532.256371	1062.49819	-0.63764	-0.00033939	-0.45773	-0.00024363	-1.0954	-0.00058302	532.2560176495901	104.77	2.2396	105.53	105.16	107.4	0.76308					165	43	6	0	0	0	0.38603	1	40025	40025		25.399	8.2864	1	93003000			55600	13408	40459	40785	54315	54315					-0.030560281787074928
TSERGSFSLY	10	Unmodified	_TSERGSFSLY_					0	0	0		ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12	ENSG00000140262|ENST00000333725|TCF12	ENSG00000140262|ENST00000333725|TCF12	MULTI-MSMS	A375_MHC_IP_R1	1	574.199951171875	2	573.774928	1145.5353	-0.025368	-1.4555E-05	-0.39194	-0.00022489	-0.41731	-0.00023944	573.7747218393099	54.141	0.65547	54.141	53.861	54.516	0					37	12	4	0	0	0	0.084058	2	19305	19270;19305		67.081	39.452	1	20593000			55601	5131	40460	40786	54316;54317	54317					-0.031643566329421446
TSERGSFSLY	10	Unmodified	_TSERGSFSLY_					0	0	0		ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12	ENSG00000140262|ENST00000333725|TCF12	ENSG00000140262|ENST00000333725|TCF12	MULTI-MSMS	A375_MHC_IP_R2	2	574.1995849609375	2	573.774928	1145.5353	-0.80949	-0.00046446	-0.5625	-0.00032275	-1.372	-0.00078721	573.7742629666503	53.371	0.96852	54.122	53.588	54.557	0.75105					40	18	4	0	0	0	0.10955	1	20062	20062		61.602	21.363	1	25098000			55602	5131	40460	40786	54318	54318					-0.031643566329421446
TSERKVSLF	9	Unmodified	_TSERKVSLF_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1973266601562	2	533.798206	1065.58186	-1.1406	-0.00060883	0.2805	0.00014973	-0.86006	-0.0004591	533.7980671734605	57.193	0.50959	57.943	57.662	58.172	0.75015					15	9	2	0	0	0	0.70759	1	21639	21639		16.149	16.149	1	2265300			55603	1726	40461	40787	54319	54319					0.05169127988983746
TSERTVLRY	9	Unmodified	_TSERTVLRY_					0	0	0		ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	MULTI-MSMS	A375_MHC_IP_R1	1	375.9402770996094	3	375.540134	1123.59857	0.19994	7.5085E-05	-0.24741	-9.2912E-05	-0.047471	-1.7827E-05	375.5400386970165	27.154	1.0086	27.154	26.878	27.887	0					50	19	4	0	0	0	0.024772	1	8153	8153		79.427	38.702	1	129790000			55604	9456	40462	40788	54320	54320					0.04171628874951239
TSERTVLRY	9	Unmodified	_TSERTVLRY_					0	0	0		ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	MULTI-SECPEP	A375_MHC_IP_R1	1	563.20654296875	2	562.806562	1123.59857	-0.57606	-0.00032421	0.033245	1.8711E-05	-0.54281	-0.0003055	562.8065853876259	27.184	0.80675	27.184	26.928	27.735	0					37	15	4	0	0	0	0.059637	1	8171	8171		97.741	53.969	1	45542000			55605	9456	40462	40788	54321	54321					0.04171628874951239
TSERTVLRY	9	Unmodified	_TSERTVLRY_					0	0	0		ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	MULTI-SECPEP	A375_MHC_IP_R2	2	375.9401550292969	3	375.540134	1123.59857	-0.092128	-3.4598E-05	-0.062678	-2.3538E-05	-0.15481	-5.8136E-05	375.5400886234293	26.509	0.86611	27.169	26.907	27.773	0.65992					50	16	5	0	0	0	0.055122	1	8936	8936		83.278	49.056	1	146270000			55606	9456	40462	40788	54322	54322					0.04171628874951239
TSERTVLRY	9	Unmodified	_TSERTVLRY_					0	0	0		ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	MULTI-SECPEP	A375_MHC_IP_R2	2	563.206298828125	2	562.806562	1123.59857	-0.91885	-0.00051713	0.089471	5.0355E-05	-0.82938	-0.00046678	562.8066221433302	26.522	0.61082	27.182	26.957	27.568	0.65992					35	11	4	0	0	0	0.034031	1	8951	8951		117.84	66.208	1	50264000			55607	9456	40462	40788	54323	54323					0.04171628874951239
TSERWTGKE	9	Unmodified	_TSERWTGKE_					0	0	0			REV__nc|ENSG00000106868|Q6UWL2-3|SUSD1	REV__nc|ENSG00000106868|Q6UWL2-3|SUSD1	MULTI-MSMS	A375_MHC_IP_R1	1	547.171142578125	2	547.26727	1092.51999	-0.70857	-0.00038777	-0.021869	-1.1968E-05	-0.73043	-0.00039974	547.267412498297	28.917	0.60832	28.917	28.694	29.302	0					35	11	5	0	0	0	0.22528	1	8915	8915		36.127	3.8215	1	23397000	+		55608	17470	40463	40789	54324	54324					-0.022572234301378558
TSESERRGF	9	Unmodified	_TSESERRGF_					0	0	0			REV__ENST00000414990.2_3_7:143298660-143300142:+|nuORF	REV__ENST00000414990.2_3_7:143298660-143300142:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	534.6841430664062	2	534.757069	1067.49959	-0.58789	-0.00031438	-0.56484	-0.00030205	-1.1527	-0.00061643	534.7567228436087	40.64	0.81004	40.64	40.203	41.013	0					17	11	2	0	0	0	0.70307	1	13953	13953		6.7232	6.7232	1	4377300	+		55609	24512	40464	40790	54325	54325					-0.031463940899584486
TSESERRGF	9	Unmodified	_TSESERRGF_					0	0	0			REV__ENST00000414990.2_3_7:143298660-143300142:+|nuORF	REV__ENST00000414990.2_3_7:143298660-143300142:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	534.757069	1067.49959	-0.58789	-0.00031438	-0.56484	-0.00030205	-1.1527	-0.00061643	534.7567228436087	40.64	0.81004	40.64	40.203	41.013	0	-0.045748	0.00013689	NaN	6.7232	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4377300	+		55610	24512	40464	40790							-0.031463940899584486
TSESSRYQF	9	Unmodified	_TSESSRYQF_					0	0	0		ENST00000583772.1_1_17:73016361-73017097:+|nuORF;ENSG00000167862|ENST00000301585|MRPL58	ENST00000583772.1_1_17:73016361-73017097:+|nuORF	ENST00000583772.1_1_17:73016361-73017097:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	553.1748657226562	2	552.751453	1103.48835	-0.69304	-0.00038308	-0.86652	-0.00047897	-1.5596	-0.00086205	552.7510692736566	48.157	0.50151	48.918	48.682	49.183	0.76044					12	9	2	0	0	0	0.67483	1	18001	18001		10.074	0	1	1664000			55611	7229	40465	40791	54326	54326					-0.05925216184095916
TSETFHPPGN	10	Unmodified	_TSETFHPPGN_					0	0	0			REV__ENST00000473499.1_1_3:150264547-150270228:+|nuORF	REV__ENST00000473499.1_1_3:150264547-150270228:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	544.1538696289062	2	543.74617	1085.47779	-1.0778	-0.00058605	-1.417	-0.00077048	-2.4948	-0.0013565	543.745608321371	49.278	0.3531	50.035	49.944	50.297	0.75737					9	6	2	0	0	0	0.6774	1	18513	18513		34.402	0	1	1221300	+		55612	19454	40466	40792	54327	54327					-0.061531988385240766
TSETPDYLLKY	11	Unmodified	_TSETPDYLLKY_					0	0	0		ENSG00000105656|ENST00000262809|ELL	ENSG00000105656|ENST00000262809|ELL	ENSG00000105656|ENST00000262809|ELL	MULTI-MSMS	A375_MHC_IP_R1	1	665.7313842773438	2	665.332276	1328.65	-0.55833	-0.00037148	0.41776	0.00027795	-0.14058	-9.3532E-05	665.3327182659949	74.598	0.71181	74.598	74.298	75.009	0					31	13	3	0	0	0	0.00010367	1	27147	27147		135.86	99.357	1	11550000			55613	2624	40467	40793	54328	54328					-0.0011809194165834924
TSETPDYLLKY	11	Unmodified	_TSETPDYLLKY_					0	0	0		ENSG00000105656|ENST00000262809|ELL	ENSG00000105656|ENST00000262809|ELL	ENSG00000105656|ENST00000262809|ELL	MULTI-MSMS	A375_MHC_IP_R2	2	665.73193359375	2	665.332276	1328.65	-0.81829	-0.00054443	0.80273	0.00053409	-0.015551	-1.0347E-05	665.332946487578	73.916	0.66154	74.654	74.398	75.06	0.73751					32	12	3	0	0	0	3.3864E-05	1	28033	28033		139.78	96.009	1	12039000			55614	2624	40467	40793	54329	54329					-0.0011809194165834924
TSETSNSRSY	10	Unmodified	_TSETSNSRSY_					0	0	0		ENSG00000118804|ENST00000237642|STBD1	ENSG00000118804|ENST00000237642|STBD1	ENSG00000118804|ENST00000237642|STBD1	MULTI-SECPEP	A375_MHC_IP_R2	2	566.6499633789062	2	566.249274	1130.484	-0.31568	-0.00017876	2.2644	0.0012822	1.9487	0.0011034	566.2503319374474	90.299	0.55956	91.031	90.699	91.258	0.7318					16	10	2	0	0	0	0.92514	1	34412	34412		8.1555	1.4324	1	1506900			55615	3560	40468	40794	54330	54330					-0.07602725397646282
TSFAKHKGA	9	Unmodified	_TSFAKHKGA_					0	0	0			REV__ENSG00000171481|ENST00000304820|OR1L3	REV__ENSG00000171481|ENST00000304820|OR1L3	MULTI-SECPEP	A375_MHC_IP_R1	1	473.6373291015625	2	473.758884	945.503215	-0.76768	-0.0003637	0.25579	0.00012118	-0.5119	-0.00024252	473.7588725779368	29.055	0.35602	29.055	28.845	29.201	0					10	6	2	0	0	0	0.73363	1	8960	8960		10.824	1.4765	1	1628500	+		55616	21069	40469	40795	54331	54331					0.02828320474566226
TSFDEQNQYF	10	Unmodified	_TSFDEQNQYF_					0	0	0			REV__nc|ENSG00000173706|Q9ULI3-2|HEG1	REV__nc|ENSG00000173706|Q9ULI3-2|HEG1	MULTI-SECPEP	A375_MHC_IP_R1	1	640.168701171875	2	639.7673	1277.52005	-0.70322	-0.00044989	-1.6213	-0.0010373	-2.3245	-0.0014872	639.7666331782666	32.154	0.81743	32.154	31.616	32.434	0					37	15	4	0	0	0	0.63289	1	10242	10242		39.95	5.548	1	12935000	+		55617	21243	40470	40796	54332	54332					-0.10761268220812781
TSFDEQNQYF	10	Unmodified	_TSFDEQNQYF_					0	0	0			REV__nc|ENSG00000173706|Q9ULI3-2|HEG1	REV__nc|ENSG00000173706|Q9ULI3-2|HEG1	MULTI-SECPEP	A375_MHC_IP_R2	2	640.16845703125	2	639.7673	1277.52005	-0.77846	-0.00049804	-1.2098	-0.00077397	-1.9882	-0.001272	639.7667993257203	31.478	0.71528	32.196	31.719	32.434	0.71857					36	13	4	0	0	0	0.63289	1	11046	11046		32.786	0	1	10248000	+		55618	21243	40470	40796	54333	54333					-0.10761268220812781
TSFEQHVLW	9	Unmodified	_TSFEQHVLW_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	A375_MHC_IP_R2	2	574.1564331054688	2	573.782556	1145.55056	-0.30388	-0.00017436	-1.1593	-0.00066519	-1.4632	-0.00083955	573.7816154583576	80.802	0.91848	81.547	81.112	82.03	0.74473					38	17	4	0	0	0	0.36673	1	30655	30655		45.74	22.591	1	6512500			55619	7431	40471	40797	54334	54334					-0.016394450450889053
TSFEQHVLW	9	Unmodified	_TSFEQHVLW_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MATCH	A375_MHC_IP_R1	1		2	573.782556	1145.55056	-0.17262	-9.9049E-05	-1.2195	-0.00069974	-1.3921	-0.00079879	573.7816410642931	81.641	1.3176	81.641	81.202	82.52	0	0.046842	-2.9508E-05	NaN	45.74	44	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7554300			55620	7431	40471	40797							-0.016394450450889053
TSFFDKGQEK	10	Unmodified	_TSFFDKGQEK_					0	0	0		nc|ENSG00000166579|Q9GZM8-3|NDEL1	nc|ENSG00000166579|Q9GZM8-3|NDEL1	nc|ENSG00000166579|Q9GZM8-3|NDEL1	MULTI-SECPEP	A375_MHC_IP_R1	1	396.5961608886719	3	396.196144	1185.5666	-0.28498	-0.00011291	0.36548	0.0001448	0.080492	3.1891E-05	396.1962995738681	27.965	0.80654	27.965	27.634	28.44	0					43	13	4	0	0	0	0.70461	1	8538	8538		30.431	3.3431	1	37784000			55621	14742	40472	40798	54335	54335					-0.018757835988708393
TSFFDKGQEK	10	Unmodified	_TSFFDKGQEK_					0	0	0		nc|ENSG00000166579|Q9GZM8-3|NDEL1	nc|ENSG00000166579|Q9GZM8-3|NDEL1	nc|ENSG00000166579|Q9GZM8-3|NDEL1	MULTI-SECPEP	A375_MHC_IP_R2	2	396.5961608886719	3	396.196144	1185.5666	-0.048597	-1.9254E-05	-0.10673	-4.2288E-05	-0.15533	-6.1541E-05	396.19609624746585	27.342	0.71069	28.02	27.741	28.452	0.67857					39	13	4	0	0	0	0.66604	1	9313	9313		33.821	6.733	1	46503000			55622	14742	40472	40798	54336	54336					-0.018757835988708393
TSFNELVFTAS	11	Unmodified	_TSFNELVFTAS_					0	0	0			REV__TRIM37|p.Q791Lfs*6|1|0.17|ENSG00000108395|chr17:59017310-59017311|-/GACA|frameshift_variant	REV__TRIM37|p.Q791Lfs*6|1|0.17|ENSG00000108395|chr17:59017310-59017311|-/GACA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	608.6981201171875	2	608.298236	1214.58192	-0.8569	-0.00052125	0.60941	0.00037071	-0.24749	-0.00015055	608.2984619685609	52.407	0.65741	53.159	52.932	53.59	0.75225					18	12	2	0	0	0	0.73189	1	19780	19780		7.1017	0	1	3300900	+		55623	17529	40473	40799	54337	54337					-0.01678916801665764
TSFNELVFTAS	11	Unmodified	_TSFNELVFTAS_					0	0	0			REV__TRIM37|p.Q791Lfs*6|1|0.17|ENSG00000108395|chr17:59017310-59017311|-/GACA|frameshift_variant	REV__TRIM37|p.Q791Lfs*6|1|0.17|ENSG00000108395|chr17:59017310-59017311|-/GACA|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	608.298236	1214.58192	-0.38896	-0.0002366	0.10645	6.4754E-05	-0.28251	-0.00017185	608.2982415871111	53.305	0.45652	53.305	53.048	53.505	0	0.073158	-0.00028349	NaN	7.1017	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1605300	+		55624	17529	40473	40799							-0.01678916801665764
TSFNELVFTAS	11	Unmodified	_TSFNELVFTAS_					0	0	0			REV__TRIM37|p.Q791Lfs*6|1|0.17|ENSG00000108395|chr17:59017310-59017311|-/GACA|frameshift_variant	REV__TRIM37|p.Q791Lfs*6|1|0.17|ENSG00000108395|chr17:59017310-59017311|-/GACA|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	608.298236	1214.58192	-0.8569	-0.00052125	0.60941	0.00037071	-0.24749	-0.00015055	608.2984619685609	52.407	0.65741	53.159	52.932	53.59	0.75225	-0.073158	0.00032842	NaN	7.1017	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3300900	+		55625	17529	40473	40799							-0.01678916801665764
TSFPHESTF	9	Unmodified	_TSFPHESTF_					0	0	0		nc|ENSG00000062194|Q86WP2-4|GPBP1;ENSG00000062194|ENST00000506184|GPBP1;nc|ENSG00000062194|Q86WP2-2|GPBP1;nc|ENSG00000062194|Q86WP2-3|GPBP1	nc|ENSG00000062194|Q86WP2-4|GPBP1	nc|ENSG00000062194|Q86WP2-4|GPBP1	MULTI-MSMS	A375_MHC_IP_R1	1	527.137451171875	2	526.737814	1051.46108	-0.54746	-0.00028837	0.16059	8.4588E-05	-0.38687	-0.00020378	526.7378826109889	47.24	0.56481	47.24	46.952	47.517	0					29	10	4	0	0	0	0.0021165	1	16574	16574		156.16	105.3	1	7771200			55626	1326	40474	40800	54338	54338					-0.06259699724478196
TSFPHESTF	9	Unmodified	_TSFPHESTF_					0	0	0		nc|ENSG00000062194|Q86WP2-4|GPBP1;ENSG00000062194|ENST00000506184|GPBP1;nc|ENSG00000062194|Q86WP2-2|GPBP1;nc|ENSG00000062194|Q86WP2-3|GPBP1	nc|ENSG00000062194|Q86WP2-4|GPBP1	nc|ENSG00000062194|Q86WP2-4|GPBP1	MULTI-MSMS	A375_MHC_IP_R2	2	526.953857421875	2	526.737814	1051.46108	-0.32887	-0.00017323	-0.16413	-8.6456E-05	-0.49301	-0.00025969	526.7376446968184	46.537	0.76157	47.302	46.855	47.617	0.76519					40	14	4	0	0	0	0.0095277	1	17478	17478		108	65.902	1	8465600			55627	1326	40474	40800	54339	54339					-0.06259699724478196
TSFRLPSL	8	Unmodified	_TSFRLPSL_					0	0	0		nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	MULTI-SECPEP	A375_MHC_IP_R1	1	461.1636047363281	2	460.763635	919.512717	-0.21702	-9.9995E-05	0.16315	7.5175E-05	-0.053866	-2.4819E-05	460.76359455565415	87.972	1.0191	87.972	87.441	88.46	0					51	19	4	0	0	0	0.1678	1	32219	32219		72.968	31.128	1	9481300			55628	1607	40475	40801	54340	54340					0.04974088760093309
TSFRLPSL	8	Unmodified	_TSFRLPSL_					0	0	0		nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	MULTI-SECPEP	A375_MHC_IP_R2	2	460.629150390625	2	460.763635	919.512717	-0.33243	-0.00015317	0.19608	9.0348E-05	-0.13634	-6.2823E-05	460.76359560867564	87.087	1.6246	87.82	86.794	88.419	0.733					65	31	4	0	0	0	0.15649	1	33159	33159		96.367	35.009	1	8150200			55629	1607	40475	40801	54341	54341					0.04974088760093309
TSFSPSHNVE	10	Unmodified	_TSFSPSHNVE_					0	0	0			REV__ENST00000376681.7_1_17:46840236-46881289:-|nuORF	REV__ENST00000376681.7_1_17:46840236-46881289:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	552.198486328125	2	552.751453	1103.48835	-0.55194	-0.00030509	0.04566	2.5238E-05	-0.50628	-0.00027985	552.7513993837836	57.699	0.71025	57.699	57.313	58.024	0					36	13	4	0	0	0	0.50967	1	20767	20767		27.629	2.2295	1	8569700	+		55630	21014	40476	40802	54342	54342					-0.05925216184095916
TSFSPSHNVE	10	Unmodified	_TSFSPSHNVE_					0	0	0			REV__ENST00000376681.7_1_17:46840236-46881289:-|nuORF	REV__ENST00000376681.7_1_17:46840236-46881289:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	553.1510620117188	2	552.751453	1103.48835	-0.55194	-0.00030509	0.04566	2.5238E-05	-0.50628	-0.00027985	552.7513993837836	57.699	0.71025	57.699	57.313	58.024	0					36	13	4	0	0	0	0.77204	1	20671	20671		27.629	9.4825	1	8569700	+		55631	21014	40476	40802	54343	54343					-0.05925216184095916
TSFTKEAY	8	Unmodified	_TSFTKEAY_					0	0	0		ENST00000533567.5_1_13:45912892-45914385:-|nuORF;nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1	ENST00000533567.5_1_13:45912892-45914385:-|nuORF	ENST00000533567.5_1_13:45912892-45914385:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	473.6369934082031	2	473.729458	945.444362	-0.77076	-0.00036513	0.0095685	4.5329E-06	-0.76119	-0.0003606	473.7292750299084	28.126	0.25363	28.804	28.706	28.96	0.67857					6	4	2	0	0	0	0.91117	1	9722	9722		21.537	2.28	1	1254900			55632	4488	40477	40803	54344	54344					-0.03054200610438329
TSFTPIPAEHS	11	Unmodified	_TSFTPIPAEHS_					0	0	0			REV__ENST00000495306.1_1_1:156784827-156786500:-|nuORF	REV__ENST00000495306.1_1_1:156784827-156786500:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	593.6798095703125	2	593.790578	1185.5666	-0.58558	-0.00034771	-0.087542	-5.1981E-05	-0.67312	-0.00039969	593.7905485191039	27.957	0.50261	27.957	27.786	28.288	0					23	9	3	0	0	0	0.43152	1	8555	8555		36.506	3.7205	1	18152000	+		55633	16292	40478	40804	54345	54345					-0.018757835988708393
TSFTPIPAEHS	11	Unmodified	_TSFTPIPAEHS_					0	0	0			REV__ENST00000495306.1_1_1:156784827-156786500:-|nuORF	REV__ENST00000495306.1_1_1:156784827-156786500:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	593.6803588867188	2	593.790578	1185.5666	-0.4919	-0.00029208	-0.23295	-0.00013832	-0.72484	-0.00043041	593.7904399154665	27.342	0.55932	28.02	27.792	28.351	0.67857					30	10	4	0	0	0	0.43152	1	9304	9304		36.506	6.6656	1	19326000	+		55634	16292	40478	40804	54346	54346					-0.018757835988708393
TSFTPIPAEHS	11	Unmodified	_TSFTPIPAEHS_					0	0	0			REV__ENST00000495306.1_1_1:156784827-156786500:-|nuORF	REV__ENST00000495306.1_1_1:156784827-156786500:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	593.790578	1185.5666	-0.4919	-0.00029208	-0.23295	-0.00013832	-0.72484	-0.00043041	593.7904399154665	27.342	0.55932	28.02	27.792	28.351	0.67857	0.031498	-9.1549E-05	NaN	36.506	30	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19326000	+		55635	16292	40478	40804							-0.018757835988708393
TSGDYLRVW	9	Unmodified	_TSGDYLRVW_					0	0	0		ENSG00000136485|ENST00000614556|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	MULTI-MSMS	A375_MHC_IP_R1	1	549.1734008789062	2	548.774731	1095.53491	-0.43411	-0.00023823	-0.10983	-6.0271E-05	-0.54393	-0.0002985	548.7746866200754	79.262	0.76637	79.262	78.859	79.625	0					28	14	3	0	0	0	0.030891	1	28928	28928		74.2	54.838	1	3359200			55636	4793	40479	40805	54347	54347					-0.009037315621526432
TSGDYLRVW	9	Unmodified	_TSGDYLRVW_					0	0	0		ENSG00000136485|ENST00000614556|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	MULTI-MSMS	A375_MHC_IP_R2	2	549.173828125	2	548.774731	1095.53491	-0.73478	-0.00040323	-0.18517	-0.00010162	-0.91995	-0.00050485	548.7747139039369	78.517	0.81363	79.261	78.931	79.744	0.74474					22	15	2	0	0	0	0.020087	1	29801	29801		83.429	58.438	1	3934000			55637	4793	40479	40805	54348	54348					-0.009037315621526432
TSGGGGCC	8	Unmodified	_TSGGGGCC_					0	0	0			REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	MULTI-SECPEP	A375_MHC_IP_R2	2	640.9895629882812	1	641.201772	640.194495	-1.0439	-0.00066934	0.72604	0.00046554	-0.31784	-0.0002038	641.2016655396351	61.187	0.30161	61.932	61.769	62.07	0.74503					8	5	2	0	0	0	0.972	1	23135	23135		0	0	1	834830	+		55638	19109	40480	40806	54349	54349					-0.13999404759329082
TSGHAYTDTG	10	Unmodified	_TSGHAYTDTG_					0	0	0		ENST00000521348.5_1_8:42251729-42259534:+|nuORF;ENSG00000078668|ENST00000022615|VDAC3;nc|ENSG00000078668|Q9Y277-2|VDAC3	ENST00000521348.5_1_8:42251729-42259534:+|nuORF	ENST00000521348.5_1_8:42251729-42259534:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	505.61419677734375	2	505.214703	1008.41485	-0.33606	-0.00016978	-0.57863	-0.00029233	-0.91469	-0.00046211	505.2143839791655	33.863	0.50523	33.863	33.597	34.103	0					21	9	3	0	0	0	0.92957	1	11106	11106		3.2813	0	1	6899600			55639	1677	40481	40807	54350	54350					-0.08901764626580189
TSGHKLVS	8	Unmodified	_TSGHKLVS_					0	0	0		nc|ENSG00000198836|O60313-11|OPA1;ENSG00000198836|ENST00000361510|OPA1	nc|ENSG00000198836|O60313-11|OPA1	nc|ENSG00000198836|O60313-11|OPA1	MULTI-MSMS	A375_MHC_IP_R2	2	415.29754638671875	2	414.732335	827.450116	-0.2395	-9.9329E-05	-0.24496	-0.00010159	-0.48446	-0.00020092	414.73230261167606	30.014	0.91294	30.713	30.434	31.347	0.69872					45	17	4	0	0	0	0.77488	1	10714	10714		13.508	0	1	44309000			55640	9341	40482	40808	54351	54351					0.029489426918985373
TSGKGKTG	8	Unmodified	_TSGKGKTG_					0	0	0			REV__ENST00000479375.6_1_9:130556974-130569527:+|nuORF	REV__ENST00000479375.6_1_9:130556974-130569527:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	368.2884216308594	2	368.20341	734.392267	0.46793	0.00017229	-1.3158	-0.00048449	-0.84788	-0.00031219	368.2034457909739	21.086	0.30309	21.086	20.895	21.199	0					6	5	2	0	0	0	0.972	1	5517	5517		0.69038	0	1	334560	+		55641	18967	40483	40809	54352	54352					0.014446807664739936
TSGPGNLWAEG	11	Unmodified	_TSGPGNLWAEG_					0	0	0		ENST00000438665.6_1_17:1378246-1378315:-|nuORF	ENST00000438665.6_1_17:1378246-1378315:-|nuORF	ENST00000438665.6_1_17:1378246-1378315:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	545.1536865234375	2	544.753995	1087.49344	-0.65658	-0.00035767	0.53818	0.00029318	-0.1184	-6.4498E-05	544.754334978099	47.481	2.1812	48.242	47.054	49.235	0.76128					84	42	2	0	0	0	0.49816	1	17713	17713		31.268	0	1	7199400			55642	11951	40484	40810	54353	54353					-0.04680912321487085
TSGPTYIKLGQ	11	Unmodified	_TSGPTYIKLGQ_					0	0	0		ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	MULTI-MSMS	A375_MHC_IP_R2	2	389.9207458496094	3	388.880156	1163.61864	-0.18784	-7.3046E-05	0.5732	0.00022291	0.38536	0.00014986	388.8802540292126	30.94	0.55589	31.658	31.367	31.923	0.71857					31	10	4	0	0	0	0.72909	1	10849	10849		9.7643	1.8189	1	14492000			55643	4514	40485	40811	54354	54354					0.04337379814887754
TSGVGGYLWYP	11	Unmodified	_TSGVGGYLWYP_					0	0	0			REV__ENST00000506389.1_1_4:104494429-104494537:+|nuORF	REV__ENST00000506389.1_1_4:104494429-104494537:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	400.9521484375	3	400.529235	1198.56587	-0.34614	-0.00013864	-2.5764	-0.0010319	-2.9225	-0.0011706	400.52815076192996	19.872	0.40313	20.482	20.298	20.701	0.61029					11	7	2	0	0	0	0.98397	1	6150	6150		13.519	4.5424	1	688530	+		55644	25550	40486	40812	54355	54355					-0.025465782479159316
TSGYNDYQF	9	Unmodified	_TSGYNDYQF_					0	0	0			REV__ENSG00000065485|ENST00000316218|PDIA5	REV__ENSG00000065485|ENST00000316218|PDIA5	MULTI-SECPEP	A375_MHC_IP_R1	1	547.187744140625	2	547.724904	1093.43525	-0.50709	-0.00027775	-0.4867	-0.00026658	-0.99379	-0.00054432	548.2263988794443	55.488	0.25446	55.488	55.381	55.635	0					6	4	2	0	0	0	0.76187	1	19809	19809		3.9444	1.8846	1	1711200	+		55645	16499	40487	40813	54356	54356					-0.10772593966771637
TSHISKSRLSW	11	Unmodified	_TSHISKSRLSW_					0	0	0		ENST00000395443.6_1_3:49094899-49114251:-|nuORF	ENST00000395443.6_1_3:49094899-49114251:-|nuORF	ENST00000395443.6_1_3:49094899-49114251:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	434.945556640625	3	434.570204	1300.68878	-0.18737	-8.1425E-05	-0.16597	-7.2127E-05	-0.35334	-0.00015355	434.57007590761174	28.387	0.3029	28.387	28.188	28.491	0					10	5	2	0	0	0	0.73404	1	8665	8665		5.0475	0.93089	1	2856600			55646	11471	40488	40814	54357	54357					0.05046678203370902
TSIAAVSYGL	10	Unmodified	_TSIAAVSYGL_					0	0	0			REV__ENSG00000164171|ENST00000296585|ITGA2	REV__ENSG00000164171|ENST00000296585|ITGA2	MULTI-MSMS	A375_MHC_IP_R1	1	491.1742248535156	2	491.266207	980.517862	-0.37467	-0.00018406	-0.040797	-2.0042E-05	-0.41547	-0.00020411	491.2662850127381	58.436	0.45617	58.436	58.126	58.582	0					12	8	2	0	0	0	0.36703	1	20953	20953		36.127	1.7253	1	1110100	+		55647	20462	40489	40815	54358	54358					0.026823478320466165
TSIAAVSYGL	10	Unmodified	_TSIAAVSYGL_					0	0	0			REV__ENSG00000164171|ENST00000296585|ITGA2	REV__ENSG00000164171|ENST00000296585|ITGA2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	491.266207	980.517862	-0.37467	-0.00018406	-0.040797	-2.0042E-05	-0.41547	-0.00020411	491.2662850127381	58.436	0.45617	58.436	58.126	58.582	0	0.087227	-0.00028903	NaN	36.127	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1110100	+		55648	20462	40489	40815							0.026823478320466165
TSIFDDFSHY	10	Unmodified	_TSIFDDFSHY_					0	0	0		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2;ENST00000604759.1_1_14:39684672-39685536:+|nuORF	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-MSMS	A375_MHC_IP_R1	1	616.2482299804688	2	616.266936	1230.51932	-0.26921	-0.00016591	0.14993	9.2395E-05	-0.11928	-7.3511E-05	616.2671346659688	104.99	0.6068	104.99	104.64	105.25	0					17	11	2	0	0	0	0.2347	1	38566	38566		45.7	29.551	1	865620			55649	9273	40490	40816	54359	54359					-0.08672062869845831
TSIFDDFSHY	10	Unmodified	_TSIFDDFSHY_					0	0	0		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2;ENST00000604759.1_1_14:39684672-39685536:+|nuORF	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-MSMS	A375_MHC_IP_R2	2	616.2465209960938	2	616.266936	1230.51932	-0.5774	-0.00035584	1.0416	0.00064192	0.46422	0.00028608	616.2681448970798	104.34	0.50872	105.11	104.75	105.26	0.76308					13	9	2	0	0	0	0.15514	2	39442	39411;39442		53.833	32.296	1	1434600			55650	9273	40490	40816	54360;54361	54361					-0.08672062869845831
TSILEQLLYG	10	Unmodified	_TSILEQLLYG_					0	0	0		nc|ENSG00000168256|Q9NYR9-3|NKIRAS2;nc|ENSG00000168256|Q9NYR9-2|NKIRAS2;ENSG00000168256|ENST00000393885|NKIRAS2;ENST00000587028.1_1_17:40173595-40173727:+|nuORF;nc|ENSG00000168256|Q9NYR9-4|NKIRAS2	nc|ENSG00000168256|Q9NYR9-3|NKIRAS2	nc|ENSG00000168256|Q9NYR9-3|NKIRAS2	MULTI-SECPEP	A375_MHC_IP_R1	1	569.2134399414062	2	568.813522	1135.61249	-0.2168	-0.00012332	0.50666	0.00028819	0.28986	0.00016488	568.8139273855512	72.529	0.86199	72.529	72.169	73.031	0					24	15	2	0	0	0	0.22459	1	26440	26440		34.932	6.4376	1	3946000			55651	7278	40491	40817	54362	54362					0.05010861583400583
TSILLLRNTKH	11	Unmodified	_TSILLLRNTKH_					0	0	0			REV__ENST00000539135.1_1_12:4358286-4385349:-|nuORF	REV__ENST00000539135.1_1_12:4358286-4385349:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	648.6275634765625	2	648.393336	1294.77212	-0.48826	-0.00031659	0.78924	0.00051174	0.30098	0.00019516	648.3938693280054	142.53	1.4234	142.56	141.36	142.79	0.030731					35	27	2	0	0	0	0.73795	1	55587	55587		1.3295	0	1	4575300	+		55652	25939	40492	40818	54363	54363					0.13652414651210165
TSILPIFATSS	11	Unmodified	_TSILPIFATSS_					0	0	0			REV__nc|ENSG00000097007|P00519-2|ABL1	REV__nc|ENSG00000097007|P00519-2|ABL1	MULTI-SECPEP	A375_MHC_IP_R2	2	569.2132568359375	2	568.813522	1135.61249	-0.6287	-0.00035761	0.21454	0.00012203	-0.41416	-0.00023558	568.8137512427231	71.79	0.75918	72.525	72.162	72.921	0.73421					23	14	2	0	0	0	0.80621	1	27256	27256		31.268	0	1	3313900	+		55653	27139	40493	40819	54364	54364					0.05010861583377846
TSILRPEQK	9	Unmodified	_TSILRPEQK_					0	0	0			REV__ENST00000303758.7_1_X:68394206-68394332:+|nuORF	REV__ENST00000303758.7_1_X:68394206-68394332:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	537.060546875	2	536.31148	1070.60841	-0.97346	-0.00052208	-0.073329	-3.9327E-05	-1.0468	-0.0005614	536.3113413931306	133.6	1.9326	133.6	132.84	134.78	0					61	37	2	0	0	0	0.71341	1	51636	51636		18.146	1.9972	1	3522600	+		55654	23449	40494	40820	54365	54365					0.07592816880310238
TSIQPLYSLT	10	Unmodified	_TSIQPLYSLT_					0	0	0		tr|U7T313|U7T313_FUSNUZinctransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00354PE=4SV=1	tr|U7T313|U7T313_FUSNUZinctransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00354PE=4SV=1	tr|U7T313|U7T313_FUSNUZinctransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00354PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	561.7266235351562	2	561.805697	1121.59684	-0.48537	-0.00027268	-0.42604	-0.00023935	-0.91141	-0.00051204	561.8056147361561	60.896	0.40653	60.896	60.669	61.075	0					13	7	3	0	0	0	0.77204	1	22002	22002		11.495	0	1	1531300			55655	29954	40495	40821	54366	54366					0.040905750663114304
TSITYTNK	8	Unmodified	_TSITYTNK_					0	0	0		ENST00000319357.5_1_7:43664520-43664628:+|nuORF	ENST00000319357.5_1_7:43664520-43664628:+|nuORF	ENST00000319357.5_1_7:43664520-43664628:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	464.30145263671875	2	464.242732	926.470912	-0.70687	-0.00032816	0.83358	0.00038698	0.12671	5.8822E-05	464.24302212820936	27.037	0.46091	27.716	27.484	27.945	0.67857					11	8	2	0	0	0	0.97021	1	9097	9097		6.7232	0	1	1697900			55656	10682	40496	40822	54367	54367					0.004734882809088958
TSIVILAFLW	10	Unmodified	_TSIVILAFLW_					0	0	0			REV__GRID2|p.S647T|1|0.42|ENSG00000152208|chr4:93490719-93490719|T/A|missense_variant	REV__GRID2|p.S647T|1|0.42|ENSG00000152208|chr4:93490719-93490719|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	581.6820068359375	2	581.847167	1161.67978	-0.39398	-0.00022923	-3.1398	-0.0018269	-3.5338	-0.0020561	581.8457253076459	27.876	0.2538	28.554	28.401	28.655	0.67857					6	4	2	0	0	0	0.92389	1	9531	9531		7.2892	0	1	976340	+		55657	26710	40497	40823	54368	54368					0.10540936584993688
TSIVKDGKFIG	11	Unmodified	_TSIVKDGKFIG_					0	0	0		tr|U7SVR0|U7SVR0_FUSNUFlavodoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01309PE=3SV=1	tr|U7SVR0|U7SVR0_FUSNUFlavodoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01309PE=3SV=1	tr|U7SVR0|U7SVR0_FUSNUFlavodoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01309PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	389.2923889160156	3	388.892284	1163.65502	-0.33096	-0.00012871	0.2327	9.0497E-05	-0.09826	-3.8212E-05	388.8924239809168	35.784	0.70993	36.547	36.132	36.842	0.76338					23	13	2	0	0	0	0.73016	1	13036	13036		8.7518	0.80638	1	2723500			55658	29795	40498	40824	54369	54369					0.07974256711622729
TSKAIHSIF	9	Unmodified	_TSKAIHSIF_					0	0	0		ENSG00000107960|ENST00000224950|STN1;ENST00000466828.5_1_10:105642444-105658073:-|nuORF	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	MULTI-SECPEP	A375_MHC_IP_R1	1	501.67645263671875	2	502.282192	1002.54983	-0.25803	-0.0001296	0.5246	0.0002635	0.26657	0.00013389	502.2825215957133	37.504	0.61234	37.504	37.351	37.964	0					16	11	2	0	0	0	0.67539	1	12629	12629		7.609	0	1	1928700			55659	2775	40499	40825	54370	54370					0.04865760305847289
TSKAKPIL	8	Unmodified	_TSKAKPIL_					0	0	0			REV__ENSG00000132467|ENST00000254803|UTP3	REV__ENSG00000132467|ENST00000254803|UTP3	MULTI-MSMS	A375_MHC_IP_R1	1	429.2914123535156	2	429.276378	856.538203	-0.033415	-1.4344E-05	-0.025934	-1.1133E-05	-0.059349	-2.5477E-05	429.27635060779454	56.114	0.40572	56.114	55.941	56.347	0					13	7	2	0	0	0	0.32803	1	20114	20114		56.541	0	1	1161700	+		55660	18656	40500	40826	54371	54371					0.1041956328251672
TSKDKRDVYY	10	Unmodified	_TSKDKRDVYY_					0	0	0		ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1;ENST00000487353.5_1_X:48336396-48336561:+|nuORF	ENSG00000068438|ENST00000348411|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	MULTI-SECPEP	A375_MHC_IP_R1	1	425.9506530761719	3	425.550698	1273.63027	-0.079355	-3.377E-05	0.64659	0.00027516	0.56724	0.00024139	425.5508310729662	34.874	0.30497	34.874	34.759	35.064	0					8	5	2	0	0	0	0.92957	1	11611	11611		3.3196	0	1	4660100			55661	1461	40501	40827	54372	54372					0.004395768382437382
TSKGLGTEG	9	Unmodified	_TSKGLGTEG_					0	0	0			REV__ENSG00000125354|ENST00000394610|SEPTIN6	REV__ENSG00000125354|ENST00000394610|SEPTIN6	MSMS	A375_MHC_IP_R1	1	424.94873046875	2	425.219257	848.423961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.416	1	22.416	21.916	22.916	0								0	0	0	0.15486	1	6015	6015		11.64	0	1		+		55662	18336	40502	40828	54373	54373					-0.006313712702194607
TSKITSTAW	9	Unmodified	_TSKITSTAW_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-MSMS	A375_MHC_IP_R1	1	498.16351318359375	2	497.763832	993.513111	-0.14996	-7.4646E-05	-0.030531	-1.5197E-05	-0.18049	-8.9843E-05	497.76375429546476	39.174	0.40752	39.174	38.933	39.34	0					17	7	3	0	0	0	0.084766	1	13368	13368		53.404	53.404	1	5284000			55663	3553	40503	40829	54374	54374					0.016094636892717062
TSKITSTAW	9	Unmodified	_TSKITSTAW_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-MSMS	A375_MHC_IP_R2	2	497.6710510253906	2	497.763832	993.513111	-0.85444	-0.00042531	0.18109	9.0142E-05	-0.67334	-0.00033517	497.7638525242743	38.273	0.45746	39.048	38.843	39.3	0.77451					17	8	3	0	0	0	0.1915	1	14107	14107		38.615	15.878	1	4172600			55664	3553	40503	40829	54375	54375					0.016094636892717062
TSKITSTAW	9	Unmodified	_TSKITSTAW_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	497.763832	993.513111	-0.14996	-7.4646E-05	-0.030531	-1.5197E-05	-0.18049	-8.9843E-05	497.76375429546476	39.174	0.40752	39.174	38.933	39.34	0	0.063171	-8.3926E-05	NaN	53.404	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5284000			55665	3553	40503	40829							0.016094636892717062
TSKIVVLHAP	10	Unmodified	_TSKIVVLHAP_					0	0	0			REV__ENSG00000162669|ENST00000370425|HFM1	REV__ENSG00000162669|ENST00000370425|HFM1	MULTI-SECPEP	A375_MHC_IP_R1	1	533.2266235351562	2	532.826766	1063.63898	-0.35628	-0.00018983	-0.030169	-1.6075E-05	-0.38644	-0.00020591	532.8267555072447	45.509	0.35231	45.509	45.284	45.636	0					11	6	2	0	0	0	0.92389	1	15931	15931		7.2892	0	1	3504100	+		55666	20288	40504	40830	54376	54376					0.10970595265348493
TSKKDLKDYF	10	Unmodified	_TSKKDLKDYF_					0	0	0		nc|ENSG00000197451|Q99729-3|HNRNPAB;nc|ENSG00000197451|Q99729-4|HNRNPAB;nc|ENSG00000197451|Q99729|HNRNPAB;ENSG00000197451|ENST00000358344|HNRNPAB;ENST00000406003.2_1_12:10264431-10264902:+|nuORF	nc|ENSG00000197451|Q99729-3|HNRNPAB	nc|ENSG00000197451|Q99729-3|HNRNPAB	MULTI-MSMS	A375_MHC_IP_R1	1	415.9555358886719	3	415.555561	1243.64485	0.24515	0.00010187	-0.075761	-3.1483E-05	0.16939	7.0389E-05	415.55549106003724	34.273	0.50581	34.273	34.001	34.507	0					15	9	2	0	0	0	0.48176	1	11321	11321		29.291	29.291	1	2808000			55667	9162	40505	40831	54377	54377					0.032776489863636016
TSKKDLKDYF	10	Unmodified	_TSKKDLKDYF_					0	0	0		nc|ENSG00000197451|Q99729-3|HNRNPAB;nc|ENSG00000197451|Q99729-4|HNRNPAB;nc|ENSG00000197451|Q99729|HNRNPAB;ENSG00000197451|ENST00000358344|HNRNPAB;ENST00000406003.2_1_12:10264431-10264902:+|nuORF	nc|ENSG00000197451|Q99729-3|HNRNPAB	nc|ENSG00000197451|Q99729-3|HNRNPAB	MULTI-MSMS	A375_MHC_IP_R2	2	415.9554748535156	3	415.555561	1243.64485	-0.38726	-0.00016093	-0.15123	-6.2843E-05	-0.53849	-0.00022377	415.55545124555084	33.418	0.50803	34.171	33.942	34.45	0.75225					16	9	2	0	0	0	0.1863	1	11984	11984		50.648	50.648	1	3502100			55668	9162	40505	40831	54378	54378					0.032776489863636016
TSKLQLYCW	9	Unmodified	_TSKLQLYCW_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	A375_MHC_IP_R2	2	571.2296142578125	2	571.289159	1140.56377	-0.523	-0.00029879	-3.115	-0.0017796	-3.638	-0.0020784	571.7900917367041	71.974	1.0131	72.708	72.314	73.327	0.73421					29	19	2	0	0	0	0.60101	1	27191	27191		14.838	1.7958	1	2200300	+		55669	16641	40506	40832	54379	54379					-0.0008933025737860589
TSKNLKAPLP	10	Unmodified	_TSKNLKAPLP_					0	0	0		OTUD4|p.P333L|1|0.41|ENSG00000164164|chr4:145150876-145150876|G/A|missense_variant	OTUD4|p.P333L|1|0.41|ENSG00000164164|chr4:145150876-145150876|G/A|missense_variant	OTUD4|p.P333L|1|0.41|ENSG00000164164|chr4:145150876-145150876|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1925659179688	2	534.824224	1067.63389	-0.82108	-0.00043914	-0.12093	-6.4677E-05	-0.94201	-0.00050381	534.8243307443634	45.541	0.25109	46.306	46.201	46.453	0.76519					6	4	2	0	0	0	0.92389	1	16983	16983		11.64	8.359	1	1423000			55670	15102	40507	40833	54380	54380					0.10278291402732975
TSKPPGTTEW	10	Unmodified	_TSKPPGTTEW_					0	0	0		ENSG00000163655|ENST00000496455|GMPS;nc|ENSG00000163655|P49915-2|GMPS;ENST00000514075.2_1_4:8176279-8176723:+|nuORF	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	MULTI-SECPEP	A375_MHC_IP_R1	1	552.671875	2	552.272021	1102.52949	-0.68568	-0.00037868	-0.67012	-0.00037009	-1.3558	-0.00074877	552.2717720972671	33.065	0.55636	33.065	32.684	33.241	0					20	10	3	0	0	0	0.097312	1	10722	10722		88.364	30.642	1	5678300			55671	6702	40508	40834	54381	54381					-0.0176745514461345
TSKQPVGF	8	Unmodified	_TSKQPVGF_					0	0	0		nc|ENSG00000157110|Q93062-4|RBPMS;nc|ENSG00000157110|Q93062-5|RBPMS;ENSG00000157110|ENST00000397323|RBPMS;nc|ENSG00000157110|Q93062-2|RBPMS;nc|ENSG00000157110|Q93062-3|RBPMS	nc|ENSG00000157110|Q93062-4|RBPMS	nc|ENSG00000157110|Q93062-4|RBPMS	MULTI-SECPEP	A375_MHC_IP_R1	1	432.634765625	2	432.23471	862.454868	-0.49408	-0.00021356	0.22435	9.6974E-05	-0.26973	-0.00011659	432.2348102784518	30.326	0.50368	30.326	30.15	30.653	0					12	9	2	0	0	0	0.14575	1	9636	9636		96.111	65.886	1	4841800			55672	6230	40509	40835	54382	54382					0.01813826834666088
TSKQPVGF	8	Unmodified	_TSKQPVGF_					0	0	0		nc|ENSG00000157110|Q93062-4|RBPMS;nc|ENSG00000157110|Q93062-5|RBPMS;ENSG00000157110|ENST00000397323|RBPMS;nc|ENSG00000157110|Q93062-2|RBPMS;nc|ENSG00000157110|Q93062-3|RBPMS	nc|ENSG00000157110|Q93062-4|RBPMS	nc|ENSG00000157110|Q93062-4|RBPMS	MULTI-MSMS	A375_MHC_IP_R2	2	432.63446044921875	2	432.23471	862.454868	-0.84598	-0.00036566	0.028038	1.2119E-05	-0.81794	-0.00035354	432.2347836861538	29.625	0.45389	30.324	30.134	30.588	0.69872					10	8	2	0	0	0	0.15187	1	10362	10362		85.642	49.597	1	3325100			55673	6230	40509	40835	54383	54383					0.01813826834666088
TSLALGISYAK	11	Unmodified	_TSLALGISYAK_					0	0	0			REV__GLMN|p.L248Yfs*11|1|0.16|ENSG00000174842|chr1:92271645-92271645|A/-|frameshift_variant	REV__GLMN|p.L248Yfs*11|1|0.16|ENSG00000174842|chr1:92271645-92271645|A/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	375.2643737792969	3	375.216768	1122.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.288	1	22.907	22.407	23.407	0.61932								0	0	0	0.16108	1	7070	7070		7.0371	0	1		+		55674	21309	40510	40836	54384	54384					0.07206567820276177
TSLCQRSAGD	10	Unmodified	_TSLCQRSAGD_					0	0	0			REV__nc|ENSG00000109466|O95198-3|KLHL2;REV__nc|ENSG00000146021|Q9UH77-3|KLHL3	REV__nc|ENSG00000109466|O95198-3|KLHL2	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1688232421875	2	519.237655	1036.46076	-0.53393	-0.00027724	-0.62213	-0.00032304	-1.1561	-0.00060027	519.2373378514286	44.055	0.65858	44.824	44.53	45.188	0.76909					21	12	2	0	0	0	0.91556	1	16330	16330		10.074	0	1	2180000	+		55675	17580;19513	40511	40837	54385	54385					-0.05601442715965277
TSLESLMDKY	10	Unmodified	_TSLESLMDKY_					0	0	0			REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	MULTI-SECPEP	A375_MHC_IP_R1	1	396.2654113769531	3	396.193523	1185.55874	-0.20586	-8.1559E-05	0.28391	0.00011248	0.078053	3.0924E-05	396.5280403832862	24.572	0.91097	24.572	24.042	24.953	0					32	17	2	0	0	0	0.87163	1	6737	6737		16.566	7.5896	1	4773700	+		55676	18896	40512	40838	54386	54386					-0.02661678910635601
TSLFIARSF	9	Unmodified	_TSLFIARSF_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-SECPEP	A375_MHC_IP_R1	1	521.6893920898438	2	521.290017	1040.56548	-0.70837	-0.00036926	-0.4641	-0.00024193	-1.1725	-0.00061119	521.2898769782304	86.172	1.2131	86.172	85.87	87.083	0					34	23	3	0	0	0	0.39273	1	31588	31588		37.075	13.054	1	4160500			55677	7941	40513	40839	54387	54387					0.0468204682290434
TSLFIARSF	9	Unmodified	_TSLFIARSF_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MATCH	A375_MHC_IP_R2	2		2	521.290017	1040.56548	-0.46808	-0.00024401	-0.16843	-8.78E-05	-0.63651	-0.00033181	521.2898985398257	85.24	0.6104	85.976	85.78	86.391	0.73602	-0.097833	9.9965E-05	NaN	49.527	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3713700			55678	7941	40513	40839							0.0468204682290434
TSLFSQTLY	9	Unmodified	_TSLFSQTLY_					0	0	0		ENST00000601530.1_1_19:49224057-49228265:-|nuORF	ENST00000601530.1_1_19:49224057-49228265:-|nuORF	ENST00000601530.1_1_19:49224057-49228265:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	529.6690063476562	2	530.27149	1058.52843	-0.50577	-0.0002682	-0.72726	-0.00038565	-1.233	-0.00065384	530.2719605028116	55.851	0.91523	55.851	55.482	56.397	0					23	17	2	0	0	0	0.27715	1	20001	20001		32.305	2.0807	1	2197900			55679	13874	40514	40840	54388	54388					0.0015033048648547265
TSLGRWAGP	9	Unmodified	_TSLGRWAGP_					0	0	0			REV__ENST00000491065.1_1_20:2641553-2644834:-|nuORF	REV__ENST00000491065.1_1_20:2641553-2644834:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	473.1510925292969	2	472.751059	943.487565	-0.25922	-0.00012255	0.072115	3.4093E-05	-0.18711	-8.8454E-05	472.751024645701	45.715	0.55912	45.715	45.484	46.043	0					19	10	3	0	0	0	0.27715	1	16020	16020		32.305	3.8186	1	4984500	+		55680	17167	40515	40841	54389	54389					0.013560339575064972
TSLGRWAGP	9	Unmodified	_TSLGRWAGP_					0	0	0			REV__ENST00000491065.1_1_20:2641553-2644834:-|nuORF	REV__ENST00000491065.1_1_20:2641553-2644834:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	473.15069580078125	2	472.751059	943.487565	-0.69158	-0.00032694	0.00062498	2.9546E-07	-0.69095	-0.00032665	472.75103024672325	44.933	0.51058	45.702	45.441	45.951	0.7691					20	9	3	0	0	0	0.27715	1	16759	16759		32.305	5.9642	1	3998000	+		55681	17167	40515	40841	54390	54390					0.013560339575064972
TSLHRYEPRR	10	Unmodified	_TSLHRYEPRR_					0	0	0			REV__nc|ENSG00000174473|Q49A17-2|GALNTL6	REV__nc|ENSG00000174473|Q49A17-2|GALNTL6	MSMS	A375_MHC_IP_R2	2	439.1695251464844	3	438.905698	1313.69527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.746	1	18.342	17.842	18.842	0.59616								0	0	0	0.15637	1	5236	5236		0.15932	0	1		+		55682	27368	40516	40842	54391	54391					0.05096616154719413
TSLIKSIW	8	Unmodified	_TSLIKSIW_					0	0	0			REV__ENST00000374454.1_1_X:69507170-69507616:-|nuORF	REV__ENST00000374454.1_1_X:69507170-69507616:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	473.7025146484375	2	474.28166	946.548768	-0.36355	-0.00017242	0.0024072	1.1417E-06	-0.36114	-0.00017128	474.2814891145448	82.798	0.50499	82.798	82.469	82.974	0					12	9	2	0	0	0	0.92636	1	30171	30171		16.942	0	1	927250	+		55683	24108	40517	40843	54392	54392					0.07335545936939525
TSLKTRLTIS	10	Unmodified	_TSLKTRLTIS_					0	0	0		nc|ENSG00000211974|A0A0C4DH43|IGHV2-70D;nc|ENSG00000274576|P01814|IGHV2-70	nc|ENSG00000211974|A0A0C4DH43|IGHV2-70D	nc|ENSG00000211974|A0A0C4DH43|IGHV2-70D	MULTI-SECPEP	A375_MHC_IP_R1	1	374.29595947265625	3	373.895917	1118.66592	0.061346	2.2937E-05	-0.15133	-5.6583E-05	-0.089988	-3.3646E-05	373.895790486484	134.3	0.81079	134.3	134.12	134.93	0					30	15	3	0	0	0	0.94891	1	51796	51796		0.69767	0	1	11865000			55684	14891	40518	40844	54393	54393					0.11133659085885483
TSLKTRLTIS	10	Unmodified	_TSLKTRLTIS_					0	0	0		nc|ENSG00000211974|A0A0C4DH43|IGHV2-70D;nc|ENSG00000274576|P01814|IGHV2-70	nc|ENSG00000211974|A0A0C4DH43|IGHV2-70D	nc|ENSG00000211974|A0A0C4DH43|IGHV2-70D	MULTI-SECPEP	A375_MHC_IP_R2	2	374.2958068847656	3	373.895917	1118.66592	0.47064	0.00017597	-0.33186	-0.00012408	0.13878	5.1888E-05	373.8957178469908	134.19	0.61438	134.33	134.18	134.8	0.13901					27	11	3	0	0	0	0.95024	1	52805	52805		0.13989	0	1	9656800			55685	14891	40518	40844	54394	54394					0.11133659085885483
TSLLYALPLD	10	Unmodified	_TSLLYALPLD_					0	0	0			REV__ENST00000568469.5_1_16:18995385-19051723:+|nuORF	REV__ENST00000568469.5_1_16:18995385-19051723:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	553.223876953125	2	553.310615	1104.60668	-0.37961	-0.00021004	-0.48071	-0.00026598	-0.86032	-0.00047602	553.3103219682307	128.22	1.6209	128.22	127.27	128.89	0					33	22	4	0	0	0	0.70741	1	49004	49004		10.074	0	1	16451000	+		55686	21000	40519	40845	54395	54395					0.05855763071713227
TSLLYALPLD	10	Unmodified	_TSLLYALPLD_					0	0	0			REV__ENST00000568469.5_1_16:18995385-19051723:+|nuORF	REV__ENST00000568469.5_1_16:18995385-19051723:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	554.2298583984375	2	553.310615	1104.60668	-0.82898	-0.00045869	-0.75244	-0.00041634	-1.5814	-0.00087502	553.3104195032304	127.79	1.9277	128.05	127.16	129.09	0.26592					39	26	3	0	0	0	0.71455	1	50281	50281		6.2058	0	1	15732000	+		55687	21000	40519	40845	54396	54396					0.05855763071713227
TSLLYALPLD	10	Unmodified	_TSLLYALPLD_					0	0	0			REV__ENST00000568469.5_1_16:18995385-19051723:+|nuORF	REV__ENST00000568469.5_1_16:18995385-19051723:+|nuORF	MSMS	A375_MHC_IP_R2	2	553.2221069335938	2	553.310615	1104.60668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.26	1	129.5	129	130	0.23946								0	0	0	0.15475	1	50797	50797		5.7319	0.50118	1		+		55688	21000	40519	40845	54397	54397					0.05855763071713227
TSLLYQLVY	9	Unmodified	_TSLLYQLVY_					0	0	0		NAALAD2|p.P458S|1|0.11|ENSG00000077616|chr11:90170098-90170098|C/T|missense_variant	NAALAD2|p.P458S|1|0.11|ENSG00000077616|chr11:90170098-90170098|C/T|missense_variant	NAALAD2|p.P458S|1|0.11|ENSG00000077616|chr11:90170098-90170098|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6927490234375	2	550.305332	1098.59611	-0.64406	-0.00035443	0.34124	0.00018779	-0.30282	-0.00016664	550.3058298394044	109.99	0.46082	110.73	110.43	110.89	0.74319					11	8	2	0	0	0	0.72623	1	41475	41475		25.399	3.6527	1	821730			55689	14443	40520	40846	54398	54398					0.05075780417291753
TSLPEPFSGDP	11	Unmodified	_TSLPEPFSGDP_					0	0	0		ENSG00000188636|ENST00000341255|RTL6	ENSG00000188636|ENST00000341255|RTL6	ENSG00000188636|ENST00000341255|RTL6	MULTI-MSMS	A375_MHC_IP_R1	1	574.2132568359375	2	573.769311	1145.52407	-0.12336	-7.0781E-05	-0.26137	-0.00014996	-0.38473	-0.00022075	573.7692137302139	53.732	0.45856	53.732	53.453	53.912	0					14	8	2	0	0	0	0.72649	1	19099	19099		12.241	0.60036	1	3323400			55690	8919	40521	40847	54399	54399					-0.042871787270769346
TSLSMVQACQA	11	Unmodified	_TSLSMVQACQA_					0	0	0			REV__nc|ENSG00000177463|P49116-2|NR2C2	REV__nc|ENSG00000177463|P49116-2|NR2C2	MULTI-SECPEP	A375_MHC_IP_R1	1	569.6890869140625	2	569.765191	1137.51583	-0.17239	-9.8222E-05	-3.1279	-0.0017822	-3.3003	-0.0018804	569.762976931749	72.448	0.70972	72.448	72.22	72.93	0					18	13	2	0	0	0	0.78118	1	26425	26425		15.248	2.7169	1	999900	+		55691	21458	40522	40848	54400	54400					-0.04742772239728765
TSLSNHAPV	9	Unmodified	_TSLSNHAPV_					0	0	0			REV__ENST00000220531.7_1_15:45900671-45900797:+|nuORF	REV__ENST00000220531.7_1_15:45900671-45900797:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	463.6585998535156	2	463.240524	924.466495	-0.58316	-0.00027014	-0.51224	-0.00023729	-1.0954	-0.00050744	463.2404185266603	31.191	0.50912	31.91	31.567	32.077	0.71857					11	9	2	0	0	0	0.74412	1	10900	10900		14.838	10.509	1	1208600	+		55692	23049	40523	40849	54401	54401					0.0012402385799532567
TSLSNHAPV	9	Unmodified	_TSLSNHAPV_					0	0	0			REV__ENST00000220531.7_1_15:45900671-45900797:+|nuORF	REV__ENST00000220531.7_1_15:45900671-45900797:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	463.240524	924.466495	-0.24054	-0.00011143	-0.16733	-7.7513E-05	-0.40787	-0.00018894	463.2405598242063	31.858	0.40927	31.858	31.718	32.127	0	-0.025965	0.00017128	NaN	20.454	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1699900	+		55693	23049	40523	40849							0.0012402385799532567
TSLTDIWSY	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))TSLTDIWSY_					1	0	0			REV__TMC5|p.S877F|1|0.17|ENSG00000103534|chr16:19490451-19490451|C/T|missense_variant	REV__TMC5|p.S877F|1|0.17|ENSG00000103534|chr16:19490451-19490451|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	564.686279296875	2	564.266404	1126.51826	-0.17493	-9.8708E-05	0.17754	0.00010018	0.0026056	1.4702E-06	564.2663727388411	111.82	1.377	111.82	111.36	112.74	0					58	26	4	0	0	0	0.067501	1	41033	41033		57.471	21.427	1	6867400	+		55694	17284	40524	40850	54402	54402					-0.03994277238734867
TSLTDIWSY	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))TSLTDIWSY_					1	0	0			REV__TMC5|p.S877F|1|0.17|ENSG00000103534|chr16:19490451-19490451|C/T|missense_variant	REV__TMC5|p.S877F|1|0.17|ENSG00000103534|chr16:19490451-19490451|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	564.6862182617188	2	564.266404	1126.51826	-0.17493	-9.8708E-05	0.17754	0.00010018	0.0026056	1.4702E-06	564.2663727388411	111.82	1.377	111.82	111.36	112.74	0					58	26	4	0	0	0	0.16229	1	41091	41091		57.471	21.427	1	6867400	+		55695	17284	40524	40850	54403	54403					-0.03994277238734867
TSLTDIWSY	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))TSLTDIWSY_					1	0	0			REV__TMC5|p.S877F|1|0.17|ENSG00000103534|chr16:19490451-19490451|C/T|missense_variant	REV__TMC5|p.S877F|1|0.17|ENSG00000103534|chr16:19490451-19490451|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	565.1669921875	2	564.266404	1126.51826	-0.30956	-0.00017467	-0.07342	-4.1428E-05	-0.38298	-0.0002161	564.2662897687644	111.19	1.2278	111.92	111.29	112.52	0.73692					54	23	3	0	0	0	0.11296	1	41892	41892		48.346	14.243	1	9820700	+		55696	17284	40524	40850	54404	54404					-0.03994277238734867
TSLTDIWSY	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))TSLTDIWSY_					1	0	0			REV__TMC5|p.S877F|1|0.17|ENSG00000103534|chr16:19490451-19490451|C/T|missense_variant	REV__TMC5|p.S877F|1|0.17|ENSG00000103534|chr16:19490451-19490451|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	564.6861572265625	2	564.266404	1126.51826	-0.30956	-0.00017467	-0.07342	-4.1428E-05	-0.38298	-0.0002161	564.2662897687644	111.19	1.2278	111.92	111.29	112.52	0.73692					54	23	3	0	0	0	0.16229	1	41908	41908		57.471	21.427	1	9820700	+		55697	17284	40524	40850	54405	54405					-0.03994277238734867
TSLTDIWSY	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))TSLTDIWSY_					1	0	0			REV__TMC5|p.S877F|1|0.17|ENSG00000103534|chr16:19490451-19490451|C/T|missense_variant	REV__TMC5|p.S877F|1|0.17|ENSG00000103534|chr16:19490451-19490451|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	564.6669921875	2	564.266404	1126.51826	-0.4429	-0.00024991	-2.0765	-0.0011717	-2.5194	-0.0014216	564.2666297782766	103.81	1.0683	104.57	104.19	105.26	0.76428					51	20	4	0	0	0	0.16229	1	39258	39258		57.471	11.45	1	3412800	+		55698	17284	40524	40850	54406	54406					-0.03994277238734867
TSLVNKVASVF	11	Unmodified	_TSLVNKVASVF_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	A375_MHC_IP_R1	1	388.9520568847656	3	388.892284	1163.65502	-0.087962	-3.4208E-05	0.35701	0.00013884	0.26904	0.00010463	388.89238981651397	36.652	0.55629	36.652	36.389	36.945	0					26	10	3	0	0	0	0.72829	1	12202	12202		10.527	0.9835	1	2484100			55699	9308	40525	40851	54407	54407					0.07974256711622729
TSLVNKVASVF	11	Unmodified	_TSLVNKVASVF_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	388.892284	1163.65502	-0.33096	-0.00012871	0.2327	9.0497E-05	-0.09826	-3.8212E-05	388.8924239809168	35.784	0.70993	36.547	36.132	36.842	0.76338	-0.052494	-6.7811E-05	NaN	10.527	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2723500			55700	9308	40525	40851							0.07974256711622729
TSLVRLSTTV	10	Unmodified	_TSLVRLSTTV_					0	0	0		nc|ENSG00000033800|O75925-3|PIAS1;PIAS1|p.L311*|1|0.22|ENSG00000033800|chr15:68153691-68153691|T/-|frameshift_variant;PIAS1|p.P370Tfs*9|1|0.29|ENSG00000033800|chr15:68173824-68173825|-/A|frameshift_variant;ENSG00000033800|ENST00000249636|PIAS1;nc|ENSG00000033800|O75925-2|PIAS1	nc|ENSG00000033800|O75925-3|PIAS1	nc|ENSG00000033800|O75925-3|PIAS1	MSMS	A375_MHC_IP_R2	2	538.71435546875	2	538.819138	1075.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.9	1	143.92	143.42	144.42	0.024414								0	0	0	0.15541	1	56223	56223		3.2813	0	1				55701	14460	40526	40852	54408	54408					0.0889368367750194
TSLWAMTRY	9	Unmodified	_TSLWAMTRY_					0	0	0		ENST00000339950.4_1_1:62902997-62905482:+|nuORF	ENST00000339950.4_1_1:62902997-62905482:+|nuORF	ENST00000339950.4_1_1:62902997-62905482:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	377.584228515625	3	376.855065	1127.54336	-0.20629	-7.774E-05	0.65313	0.00024613	0.44684	0.00016839	376.8553045776294	25.027	0.55875	25.671	25.314	25.873	0.64368					14	10	2	0	0	0	0.78351	1	8168	8168		2.7352	0	1	1937100			55702	10848	40527	40853	54409	54409					-0.015305009171697748
TSLWWLGI	8	Unmodified	_TSLWWLGI_					0	0	0		nc|ENSG00000002745|Q9UBV4-2|WNT16	nc|ENSG00000002745|Q9UBV4-2|WNT16	nc|ENSG00000002745|Q9UBV4-2|WNT16	MSMS	A375_MHC_IP_R2	2	488.30023193359375	2	488.268553	974.522553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.228	1	25.872	25.372	26.372	0.64368								0	0	0	0.16876	1	8407	8407		14.582	1.5392	1				55703	14447	40528	40854	54410	54410					0.034272767654556446
TSMLMMKSL	9	Unmodified	_TSMLMMKSL_					0	0	0			REV__ENST00000537878.5_1_12:16500588-16507345:+|nuORF	REV__ENST00000537878.5_1_12:16500588-16507345:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	521.6607666015625	2	521.260699	1040.50684	-0.53953	-0.00028124	1.061	0.00055307	0.52148	0.00027183	521.260954781341	88.943	0.35477	89.674	89.482	89.836	0.7318					15	6	3	0	0	0	0.56537	1	33898	33898		17.113	0	1	1458600	+		55704	16173	40529	40855	54411	54411					-0.011788371297370759
TSMMYNGIMA	10	Unmodified	_TSMMYNGIMA_					0	0	0		ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	MULTI-SECPEP	A375_MHC_IP_R1	1	560.1404418945312	2	559.737588	1117.46062	-0.50325	-0.00028169	1.9395	0.0010856	1.4362	0.00080391	559.738757718185	57.781	0.65957	57.781	57.415	58.075	0					21	12	2	0	0	0	0.69172	1	20717	20717		25.399	4.9457	1	3810400			55705	1734	40530	40856	54412	54412					-0.09340902031840415
TSMRDVYRKF	10	Unmodified	_TSMRDVYRKF_					0	0	0		ENST00000491154.1_1_X:153666748-153668487:+|nuORF;ENSG00000203879|ENST00000447750|GDI1	ENST00000491154.1_1_X:153666748-153668487:+|nuORF	ENST00000491154.1_1_X:153666748-153668487:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	435.2823486328125	3	434.89229	1301.65504	-0.079602	-3.4618E-05	-0.32861	-0.00014291	-0.40821	-0.00017753	434.8922106219393	35.085	0.509	35.085	34.963	35.472	0					13	9	2	0	0	0	0.88038	1	11677	11677		9.2438	7.1598	1	2278900			55706	12655	40531	40857	54413	54413					0.016279334399314394
TSNHRIEKCV	10	Unmodified	_TSNHRIEKCV_					0	0	0			REV__CON__P17697	REV__CON__P17697	MULTI-SECPEP	A375_MHC_IP_R1	1	396.2801818847656	3	396.204757	1185.59244	-0.16603	-6.5783E-05	3.1004	0.0012284	2.9344	0.0011626	396.5401799390291	28.286	0.30197	28.286	28.088	28.39	0					8	5	2	0	0	0	0.87163	1	8647	8647		8.4443	0.83535	1	832890	+	+	55707	15861	40532	40858	54414	54414					0.007067873717687689
TSNWSPLGPP	10	Unmodified	_TSNWSPLGPP_					0	0	0		ENSG00000196782|ENST00000509479|MAML3	ENSG00000196782|ENST00000509479|MAML3	ENSG00000196782|ENST00000509479|MAML3	MULTI-SECPEP	A375_MHC_IP_R2	2	528.1376342773438	2	528.261456	1054.50836	-0.98614	-0.00052094	-0.29692	-0.00015685	-1.2831	-0.00067779	528.2613163231907	53.729	0.66696	54.48	54.097	54.764	0.75105					27	12	3	0	0	0	0.8528	1	20238	20238		21.537	9.0054	1	7458500			55708	9083	40533	40859	54415	54415					-0.016714204534764576
TSNWWDRY	8	Unmodified	_TSNWWDRY_					0	0	0			REV__nc|ENSG00000167780|O75908-3|SOAT2	REV__nc|ENSG00000167780|O75908-3|SOAT2	MULTI-SECPEP	A375_MHC_IP_R1	1	564.6483154296875	2	564.24888	1126.48321	-0.43329	-0.00024448	-1.0175	-0.00057412	-1.4508	-0.0008186	564.248230515334	34.719	0.30319	34.719	34.507	34.81	0					8	5	2	0	0	0	0.86263	1	11490	11490		26.884	26.884	1	2711700	+		55709	20795	40534	40860	54416	54416					-0.0749747525605926
TSPCPLTHI	9	Unmodified	_TSPCPLTHI_					0	0	0			REV__ENST00000488735.1_1_3:78742324-78763649:-|nuORF	REV__ENST00000488735.1_1_3:78742324-78763649:-|nuORF	MSMS	A375_MHC_IP_R2	2	484.6820983886719	2	484.747127	967.479702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.181	1	58.93	58.43	59.43	0.74894								0	0	0	0.14905	1	22008	22008		23.148	3.7094	1		+		55710	25356	40535	40861	54417	54417					-0.005338613542676285
TSPEQRQSL	9	Unmodified	_TSPEQRQSL_					0	0	0			REV__ENSG00000097096|ENST00000341460|SYDE2	REV__ENSG00000097096|ENST00000341460|SYDE2	MULTI-SECPEP	A375_MHC_IP_R1	1	522.9797973632812	2	523.26727	1044.51999	-0.29232	-0.00015296	-0.42483	-0.0002223	-0.71715	-0.00037526	523.2670987572849	35.547	0.61345	35.547	35.319	35.932	0					17	11	2	0	0	0	0.65246	1	11765	11765		15.847	15.847	1	3126000	+		55711	17010	40536	40862	54418	54418					-0.0004922343014186481
TSPFDTSLYW	10	Unmodified	_TSPFDTSLYW_					0	0	0			REV__nc|ENSG00000182158|Q70SY1-3|CREB3L2	REV__nc|ENSG00000182158|Q70SY1-3|CREB3L2	MULTI-SECPEP	A375_MHC_IP_R2	2	609.1798095703125	2	608.779679	1215.5448	-0.35103	-0.0002137	-0.26756	-0.00016289	-0.61859	-0.00037659	609.2811533814366	87.559	0.50343	88.291	87.965	88.468	0.7318					13	9	2	0	0	0	0.78945	1	33313	33313		25.399	0	1	3824600	+		55712	21674	40537	40863	54419	54419					-0.05434588347429781
TSPFPILLSF	10	Unmodified	_TSPFPILLSF_					0	0	0		nc|ENSG00000182621|Q9NQ66-2|PLCB1;ENSG00000182621|ENST00000338037|PLCB1	nc|ENSG00000182621|Q9NQ66-2|PLCB1	nc|ENSG00000182621|Q9NQ66-2|PLCB1	MULTI-SECPEP	A375_MHC_IP_R2	2	374.5860290527344	3	374.546226	1120.61685	0.17577	6.5833E-05	2.7051	0.0010132	2.8808	0.001079	374.5470273538059	35.822	0.30505	36.586	36.486	36.792	0.76338					7	5	2	0	0	0	0.91909	1	13063	13063		5.4027	1.8157	1	853040			55713	8424	40538	40864	54420	54420					0.06136370796957635
TSPRSPSGL	9	Unmodified	_TSPRSPSGL_					0	0	0		ENST00000396987.7_1_8:41479703-41480342:+|nuORF	ENST00000396987.7_1_8:41479703-41480342:+|nuORF	ENST00000396987.7_1_8:41479703-41480342:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	451.68927001953125	2	451.240524	900.466495	-0.1926	-8.691E-05	0.13267	5.9865E-05	-0.059936	-2.7046E-05	451.2405002210449	31.338	0.45622	31.338	31.16	31.616	0					13	8	2	0	0	0	0.38603	1	9972	9972		25.399	4.5281	1	1668500			55714	11500	40539	40865	54421	54421					0.012280238579933211
TSPRVGPLATY	11	Unmodified	_TSPRVGPLATY_					0	0	0		ENST00000513154.5_1_5:114505459-114505627:-|nuORF	ENST00000513154.5_1_5:114505459-114505627:-|nuORF	ENST00000513154.5_1_5:114505459-114505627:-|nuORF	MSMS	A375_MHC_IP_R2	2	581.1585083007812	2	581.316763	1160.61897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.504	1	64.244	63.744	64.744	0.74022								0	0	0	0.16124	1	24075	24075		12.241	5.5175	1				55715	12926	40540	40866	54422	54422					0.04508799534778518
TSPVQLVTV	9	Unmodified	_TSPVQLVTV_					0	0	0			REV__ENST00000533683.6_2_19:14199897-14200170:-|nuORF	REV__ENST00000533683.6_2_19:14199897-14200170:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	944.5703735351562	1	943.545874	942.538597	-0.20595	-0.00019432	-0.63828	-0.00060224	-0.84423	-0.00079657	943.545464557056	105.92	0.66351	106.68	106.32	106.99	0.75977					24	12	3	0	0	0	0.64136	1	39966	39966		12.241	2.1667	1	8448400	+		55716	25883	40541	40867	54423	54423					0.0650293821172454
TSPVQLVTV	9	Unmodified	_TSPVQLVTV_					0	0	0			REV__ENST00000533683.6_2_19:14199897-14200170:-|nuORF	REV__ENST00000533683.6_2_19:14199897-14200170:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	943.545874	942.538597	0.20343	0.00019194	-0.47853	-0.00045152	-0.2751	-0.00025957	943.5455490404809	106.74	0.66359	106.74	106.37	107.03	0	0.029748	5.8246E-05	NaN	12.241	28	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8358900	+		55717	25883	40541	40867							0.0650293821172454
TSPWRPTRS	9	Unmodified	_TSPWRPTRS_					0	0	0			REV__ENST00000252483.9_1_19:45368758-45368899:+|nuORF	REV__ENST00000252483.9_1_19:45368758-45368899:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	362.9654541015625	3	363.192957	1086.55704	-0.39105	-0.00014203	-0.27774	-0.00010087	-0.66879	-0.0002429	363.19273721522285	24.284	1.2706	24.928	24.194	25.465	0.64368					35	24	2	0	0	0	0.74412	1	7756	7756		6.6304	3.0339	1	5584800	+		55718	23127	40542	40868	54424	54424					0.017224929062649608
TSQAESYYR	9	Unmodified	_TSQAESYYR_					0	0	0		nc|ENSG00000116698|Q92540-4|SMG7;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;ENSG00000116698|ENST00000688051|SMG7	nc|ENSG00000116698|Q92540-4|SMG7	nc|ENSG00000116698|Q92540-4|SMG7	MULTI-MSMS	A375_MHC_IP_R2	2	553.1513061523438	2	552.751453	1103.48835	-1.2083	-0.0006679	-0.072559	-4.0107E-05	-1.2809	-0.000708	552.7513686568698	56.921	0.71405	57.672	57.356	58.07	0.75014					30	13	4	0	0	0	0.32092	1	21507	21507		29.082	2.8134	1	9140700			55719	14558	40543	40869	54425	54425					-0.05925216184095916
TSQAESYYR	9	Unmodified	_TSQAESYYR_					0	0	0		nc|ENSG00000116698|Q92540-4|SMG7;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;ENSG00000116698|ENST00000688051|SMG7	nc|ENSG00000116698|Q92540-4|SMG7	nc|ENSG00000116698|Q92540-4|SMG7	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	552.751453	1103.48835	-1.2083	-0.0006679	-0.072559	-4.0107E-05	-1.2809	-0.000708	552.7513686568698	56.921	0.71405	57.672	57.356	58.07	0.75014	-0.013455	-6.7485E-05	NaN	29.082	30	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9140700			55720	14558	40543	40869							-0.05925216184095916
TSQDVLHSW	9	Unmodified	_TSQDVLHSW_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1561279296875	2	536.756538	1071.49852	-0.70419	-0.00037798	0.18702	0.00010038	-0.51717	-0.00027759	536.7566368220671	57.738	1.4725	57.738	57.313	58.786	0					83	28	4	0	0	0	0.011236	1	20627	20627		118.07	74.21	1	121300000			55721	9304	40544	40870	54426	54426					-0.03436608458855517
TSQDVLHSW	9	Unmodified	_TSQDVLHSW_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	A375_MHC_IP_R2	2	537.7030029296875	2	536.756538	1071.49852	-1.3036	-0.00069973	0.14293	7.6721E-05	-1.1607	-0.00062301	536.7565827506585	56.965	1.4772	57.715	57.203	58.681	0.75015					83	28	4	0	0	0	0.55471	1	21694	21694		17.113	4.0704	1	112580000			55722	9304	40544	40870	54427	54427					-0.03436608458855517
TSQHELQDY	9	Unmodified	_TSQHELQDY_					0	0	0		nc|ENSG00000143952|Q9P1Q0-2|VPS54;ENSG00000143952|ENST00000272322|VPS54;nc|ENSG00000143952|Q9P1Q0-3|VPS54;nc|ENSG00000143952|Q9P1Q0-4|VPS54	nc|ENSG00000143952|Q9P1Q0-2|VPS54	nc|ENSG00000143952|Q9P1Q0-2|VPS54	MULTI-MSMS	A375_MHC_IP_R1	1	561.1488037109375	2	560.74891	1119.48327	-0.48209	-0.00027033	-0.14866	-8.3358E-05	-0.63074	-0.00035369	560.7487308863072	57.714	0.81266	57.714	57.313	58.126	0					27	15	2	0	0	0	0.29981	2	20674	20635;20674		30.637	4.7643	1	6178900			55723	5450	40545	40871	54428;54429	54429					-0.07169520046704747
TSQHELQDY	9	Unmodified	_TSQHELQDY_					0	0	0		nc|ENSG00000143952|Q9P1Q0-2|VPS54;ENSG00000143952|ENST00000272322|VPS54;nc|ENSG00000143952|Q9P1Q0-3|VPS54;nc|ENSG00000143952|Q9P1Q0-4|VPS54	nc|ENSG00000143952|Q9P1Q0-2|VPS54	nc|ENSG00000143952|Q9P1Q0-2|VPS54	MULTI-MSMS	A375_MHC_IP_R2	2	560.140869140625	2	560.74891	1119.48327	-1.0473	-0.00058727	0.2581	0.00014473	-0.7892	-0.00044254	560.7487921520177	56.962	1.0706	57.712	57	58.07	0.75014					44	20	4	0	0	0	0.41409	1	21513	21513		24.021	2.4304	1	7779800			55724	5450	40545	40871	54430	54430					-0.07169520046704747
TSQHELQDY	9	Unmodified	_TSQHELQDY_					0	0	0		nc|ENSG00000143952|Q9P1Q0-2|VPS54;ENSG00000143952|ENST00000272322|VPS54;nc|ENSG00000143952|Q9P1Q0-3|VPS54;nc|ENSG00000143952|Q9P1Q0-4|VPS54	nc|ENSG00000143952|Q9P1Q0-2|VPS54	nc|ENSG00000143952|Q9P1Q0-2|VPS54	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	560.74891	1119.48327	-1.0473	-0.00058727	0.2581	0.00014473	-0.7892	-0.00044254	560.7487921520177	56.962	1.0706	57.712	57	58.07	0.75014	-0.00099091	0.00028768	NaN	30.637	44	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7779800			55725	5450	40545	40871							-0.07169520046704747
TSRALIVHI	9	Unmodified	_TSRALIVHI_					0	0	0			REV__ENST00000417982.6_1_17:53851072-53853458:+|nuORF	REV__ENST00000417982.6_1_17:53851072-53853458:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	505.7111511230469	2	505.311284	1008.60801	-1.2665	-0.00063997	0.57156	0.00028881	-0.69493	-0.00035115	505.31154402654875	53.472	0.66507	54.223	53.944	54.609	0.75105					28	12	3	0	0	0	0.38578	1	20143	20143		34.402	0	1	19143000	+		55726	19249	40546	40872	54431	54431					0.1040544195111579
TSREFTNAY	9	Unmodified	_TSREFTNAY_					0	0	0		ENSG00000121101|ENST00000349033|TEX14;nc|ENSG00000121101|Q8IWB6-2|TEX14;nc|ENSG00000121101|Q8IWB6|TEX14;TEX14|p.T1009Gfs*8|1|0.04|ENSG00000121101|chr17:58585864-58585865|-/CATTGTTGCC|frameshift_variant	ENSG00000121101|ENST00000349033|TEX14	ENSG00000121101|ENST00000349033|TEX14	MULTI-MSMS	A375_MHC_IP_R1	1	545.1900024414062	2	544.753995	1087.49344	-0.338	-0.00018413	0.5856	0.00031901	0.2476	0.00013488	544.7542041911131	42.818	0.76342	42.818	42.587	43.351	0					28	14	3	0	0	0	0.35581	1	14862	14862		26.884	1.8927	1	3617000			55727	3708	40547	40873	54432	54432					-0.04680912321487085
TSREFTNAY	9	Unmodified	_TSREFTNAY_					0	0	0		ENSG00000121101|ENST00000349033|TEX14;nc|ENSG00000121101|Q8IWB6-2|TEX14;nc|ENSG00000121101|Q8IWB6|TEX14;TEX14|p.T1009Gfs*8|1|0.04|ENSG00000121101|chr17:58585864-58585865|-/CATTGTTGCC|frameshift_variant	ENSG00000121101|ENST00000349033|TEX14	ENSG00000121101|ENST00000349033|TEX14	MULTI-MSMS	A375_MHC_IP_R2	2	545.15380859375	2	544.753995	1087.49344	-1.2294	-0.00066973	0.34834	0.00018976	-0.88108	-0.00047997	544.754420216265	56.974	1.0185	57.724	57.306	58.324	0.75014					40	19	4	0	0	0	0.25276	1	21516	21516		34.102	2.8341	1	4256900			55728	3708	40547	40873	54433	54433					-0.04680912321487085
TSRFTPPAF	9	Unmodified	_TSRFTPPAF_					0	0	0		ENSG00000122733|ENST00000242315|PHF24	ENSG00000122733|ENST00000242315|PHF24	ENSG00000122733|ENST00000242315|PHF24	MULTI-SECPEP	A375_MHC_IP_R2	2	511.6868591308594	2	512.266542	1022.51853	-0.6688	-0.0003426	0.16779	8.5955E-05	-0.501	-0.00025665	512.2666319759371	69.553	0.56068	70.287	70.081	70.642	0.73421					18	10	2	0	0	0	0.71341	1	26391	26391		13.042	0	1	1488700			55729	3805	40548	40874	54434	54434					0.00817187271752573
TSRIQKESI	9	Unmodified	_TSRIQKESI_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.K10017Ifs*3|1|0.07|ENSG00000181143|chr19:8946720-8946721|-/A|frameshift_variant;MUC16|p.L10196Yfs*32|1|0.2|ENSG00000181143|chr19:8946183-8946183|A/-|frameshift_variant;MUC16|p.N7637Ifs*2|1|0.95|ENSG00000181143|chr19:8953860-8953860|T/-|frameshift_variant;MUC16|p.S7242F|3|0.17|ENSG00000181143|chr19:8955045-8955045|G/A|missense_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	A375_MHC_IP_R1	1	532.0894165039062	2	531.301113	1060.58767	-0.58281	-0.00030965	-2.1172	-0.0011248	-2.7	-0.0014345	531.2992732161404	59.515	0.20224	59.515	59.397	59.599	0					5	3	2	0	0	0	0.60917	1	21436	21436		5.7319	0	1	895040			55730	8335	40549	40875	54435	54435					0.059802265006510424
TSRKEDWYIWQ	11	Unmodified	_TSRKEDWYIWQ_					0	0	0		ENSG00000169436|ENST00000303045|COL22A1;nc|ENSG00000169436|Q8NFW1-2|COL22A1;nc|ENSG00000169436|Q8NFW1-3|COL22A1	ENSG00000169436|ENST00000303045|COL22A1	ENSG00000169436|ENST00000303045|COL22A1	MSMS	A375_MHC_IP_R2	2	504.624755859375	3	504.580769	1510.72048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.254	1	20.864	20.364	21.364	0.61029								0	0	0	0.16297	1	6290	6290		1.3296	0.40411	1				55731	7408	40550	40876	54436	54436					-0.014453738333259025
TSRKKYKPGR	10	Unmodified	_TSRKKYKPGR_					0	0	0		nc|ENSG00000111880|O60942-3|RNGTT;nc|ENSG00000111880|O60942-2|RNGTT	nc|ENSG00000111880|O60942-3|RNGTT	nc|ENSG00000111880|O60942-3|RNGTT	MSMS	A375_MHC_IP_R1	1	407.6109924316406	3	407.578923	1219.71494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.105	1	28.105	27.605	28.605	0								0	0	0	0.15267	1	8624	8624		12.175	5.9829	1				55732	14546	40551	40877	54437	54437					0.11386992165489573
TSRKNFLYQ	9	Unmodified	_TSRKNFLYQ_					0	0	0		KBTBD8|p.S557F|2|0.29|ENSG00000163376|chr3:67008249-67008249|C/T|missense_variant	KBTBD8|p.S557F|2|0.29|ENSG00000163376|chr3:67008249-67008249|C/T|missense_variant	KBTBD8|p.S557F|2|0.29|ENSG00000163376|chr3:67008249-67008249|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	579.17431640625	2	578.809105	1155.60366	-0.26449	-0.00015309	0.5293	0.00030636	0.26481	0.00015327	579.3108796550379	30.879	0.35281	31.598	31.417	31.77	0.71857					11	6	3	0	0	0	0.77396	1	10947	10947		3.2813	1.6287	1	1957700			55733	14191	40552	40878	54438	54438					0.03207932737564079
TSRLHTPIEL	10	Unmodified	_TSRLHTPIEL_					0	0	0		ENST00000450775.2_1_16:725790-727700:+|nuORF	ENST00000450775.2_1_16:725790-727700:+|nuORF	ENST00000450775.2_1_16:725790-727700:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	389.26800537109375	3	389.555784	1165.64552	0.34801	0.00013557	-0.018321	-7.1372E-06	0.32969	0.00012843	389.5557584342586	20.818	0.71394	20.818	20.587	21.301	0					19	13	2	0	0	0	0.92878	1	5558	5558		12.856	1.957	1	5329600			55734	12071	40553	40879	54439	54439					0.06932488426082273
TSRQAQAQLL	10	Unmodified	_TSRQAQAQLL_					0	0	0		nc|ENSG00000165731|P07949-2|RET;ENSG00000165731|ENST00000355710|RET	nc|ENSG00000165731|P07949-2|RET	nc|ENSG00000165731|P07949-2|RET	MULTI-SECPEP	A375_MHC_IP_R2	2	372.9521484375	3	372.543767	1114.60947	0.42703	0.00015909	1.0624	0.00039581	1.4895	0.00055489	372.5441267709708	32.317	0.50769	33.054	32.654	33.162	0.73691					10	9	2	0	0	0	0.90513	1	11420	11420		4.7159	0	1	1157200			55735	6986	40554	40880	54440	54440					0.05675031249234053
TSRRIDLEAQ	10	Unmodified	_TSRRIDLEAQ_					0	0	0			REV__ENST00000488252.6_1_19:19287863-19288136:-|nuORF	REV__ENST00000488252.6_1_19:19287863-19288136:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	396.9716491699219	3	396.882559	1187.62585	-0.32854	-0.00013039	1.1007	0.00043685	0.77215	0.00030645	396.8832897851849	26.901	0.40973	27.561	27.313	27.722	0.65992					10	7	2	0	0	0	0.92227	1	9144	9144		2.8433	0	1	1072200	+		55736	25345	40555	40881	54441	54441					0.03954112415317468
TSRRLVLLEG	10	Unmodified	_TSRRLVLLEG_					0	0	0			REV__ENST00000479298.5_1_X:100878865-100879887:+|nuORF	REV__ENST00000479298.5_1_X:100878865-100879887:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	381.2646179199219	3	381.899662	1142.67716	-0.31652	-0.00012088	0.3654	0.00013955	0.048876	1.8666E-05	381.8996146100038	26.87	0.30687	27.53	27.313	27.62	0.65992					9	5	2	0	0	0	0.93578	1	9043	9043		1.5923	0.96546	1	812630	+		55737	25230	40556	40882	54442	54442					0.11152481180033647
TSRRRRKL	8	Unmodified	_TSRRRRKL_					0	0	0			REV__nc|ENSG00000184224|Q8NBR9|NDUFV1-DT	REV__nc|ENSG00000184224|Q8NBR9|NDUFV1-DT	MULTI-MSMS	A375_MHC_IP_R2	2	358.2972106933594	3	358.231857	1071.67374	-0.54175	-0.00019407	-0.87519	-0.00031352	-1.4169	-0.00050759	358.2315762559861	23.122	0.55967	23.752	23.47	24.029	0.63014					13	10	2	0	0	0	0.77762	1	7387	7387		3.5965	3.5965	1	4312600	+		55738	27407	40557	40883	54443	54443					0.14077275916702092
TSRRVELLI	9	Unmodified	_TSRRVELLI_					0	0	0		nc|ENSG00000115657|Q9NP58-4|ABCB6;ENSG00000115657|ENST00000265316|ABCB6;ENST00000446716.5_1_2:220075515-220081188:-|nuORF	nc|ENSG00000115657|Q9NP58-4|ABCB6	nc|ENSG00000115657|Q9NP58-4|ABCB6	MULTI-SECPEP	A375_MHC_IP_R1	1	544.235107421875	2	543.835123	1085.65569	-0.60494	-0.00032899	-0.21193	-0.00011526	-0.81688	-0.00044425	543.835039088036	33.368	0.30581	33.368	33.19	33.496	0					9	5	2	0	0	0	0.80535	1	10902	10902		3.9444	0	1	2889700			55739	3329	40558	40884	54444	54444					0.11629096151318663
TSRSSNAALE	10	Unmodified	_TSRSSNAALE_					0	0	0			REV__nc|ENSG00000168014|Q4AC94-4|C2CD3	REV__nc|ENSG00000168014|Q4AC94-4|C2CD3	MULTI-SECPEP	A375_MHC_IP_R2	2	518.9710083007812	2	518.256902	1034.49925	-0.88302	-0.00045763	1.9596	0.0010156	1.0766	0.00055795	518.2569769541489	51.315	0.45717	52.067	51.813	52.27	0.75225					11	8	2	0	0	0	0.8866	1	19212	19212		19.362	5.4559	1	724690	+		55740	27343	40559	40885	54445	54445					-0.016618138098010604
TSSAAPAP	8	Unmodified	_TSSAAPAP_					0	0	0			REV__ENSG00000128283|ENST00000249014|CDC42EP1	REV__ENSG00000128283|ENST00000249014|CDC42EP1	MULTI-MSMS	A375_MHC_IP_R2	2	701.2431640625	1	701.346446	700.339169	-0.71875	-0.00050409	-3.4761	-0.002438	-4.1949	-0.0029421	701.3453582127462	77.293	0.55795	78.036	77.757	78.315	0.74293					14	10	2	0	0	0	0.77123	1	29404	29404		14.582	0	1	1076400	+		55741	18446	40560	40886	54446	54446					-0.022986970162037323
TSSDEMMKSYV	11	Unmodified	_TSSDEMMKSYV_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MSMS	A375_MHC_IP_R1	1	426.6167907714844	3	426.51779	1276.53154	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.285	1	35.285	34.785	35.785	0								0	0	0	0.16297	1	11725	11725		1.3296	0.11481	1				55742	9866	40561	40887	54447	54447					-0.0956653051334797
TSSEDHSNQN	10	Unmodified	_TSSEDHSNQN_					0	0	0		ENST00000399586.2_1_X:74960734-74966719:-|nuORF	ENST00000399586.2_1_X:74960734-74966719:-|nuORF	ENST00000399586.2_1_X:74960734-74966719:-|nuORF	MSMS	A375_MHC_IP_R2	2	560.12060546875	2	559.720881	1117.42721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.1395	1	9.5864	9.0864	10.086	0.44698								0	0	0	0.15642	1	2848	2848		0	0	1				55743	11543	40562	40888	54448	54448					-0.12680772954195163
TSSKPDPSQW	10	Unmodified	_TSSKPDPSQW_					0	0	0		nc|ENSG00000147526|O75410-3|TACC1;nc|ENSG00000147526|O75410-7|TACC1;nc|ENSG00000147526|O75410-9|TACC1;ENSG00000147526|ENST00000317827|TACC1;nc|ENSG00000147526|O75410-2|TACC1;ENST00000522955.5_1_8:38663104-38684943:+|nuORF	nc|ENSG00000147526|O75410-3|TACC1	nc|ENSG00000147526|O75410-3|TACC1	MULTI-MSMS	A375_MHC_IP_R1	1	567.1668701171875	2	566.767103	1131.51965	-0.50981	-0.00028894	-0.28818	-0.00016333	-0.798	-0.00045228	566.7669587501567	32.276	0.61163	32.276	31.973	32.585	0					23	11	3	0	0	0	0.01042	1	10445	10445		92.201	57.269	1	3049400			55744	5689	40563	40889	54449	54449					-0.0408464315000856
TSSKPDPSQW	10	Unmodified	_TSSKPDPSQW_					0	0	0		nc|ENSG00000147526|O75410-3|TACC1;nc|ENSG00000147526|O75410-7|TACC1;nc|ENSG00000147526|O75410-9|TACC1;ENSG00000147526|ENST00000317827|TACC1;nc|ENSG00000147526|O75410-2|TACC1;ENST00000522955.5_1_8:38663104-38684943:+|nuORF	nc|ENSG00000147526|O75410-3|TACC1	nc|ENSG00000147526|O75410-3|TACC1	MULTI-SECPEP	A375_MHC_IP_R2	2	567.166748046875	2	566.767103	1131.51965	-0.41598	-0.00023576	-0.028788	-1.6316E-05	-0.44477	-0.00025208	566.7671047829068	31.666	0.56057	32.403	32.044	32.605	0.73691					17	10	2	0	0	0	0.20239	1	11238	11238		55.235	30.244	1	2369900			55745	5689	40563	40889	54450	54450					-0.0408464315000856
TSSLSLLKKSE	11	Unmodified	_TSSLSLLKKSE_					0	0	0			REV__ENSG00000170782|ENST00000379829|OR10A4	REV__ENSG00000170782|ENST00000379829|OR10A4	MSMS	A375_MHC_IP_R1	1	596.8536376953125	2	596.84281	1191.67107	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.19	1	104.19	103.69	104.69	0								0	0	0	0.16191	1	38260	38260		8.7454	0	1		+		55746	21017	40564	40890	54451	54451					0.08289918157856846
TSSPPHSF	8	Unmodified	_TSSPPHSF_					0	0	0			REV__nc|ENSG00000136111|O60343-3|TBC1D4	REV__nc|ENSG00000136111|O60343-3|TBC1D4	MULTI-MSMS	A375_MHC_IP_R2	2	430.60052490234375	2	430.200867	858.387182	-0.25328	-0.00010896	1.1754	0.00050567	0.92216	0.00039671	430.2007684137944	31.003	0.40704	31.721	31.567	31.974	0.71857					15	7	3	0	0	0	0.71451	1	10964	10964		30.225	0	1	2674600	+		55747	27243	40565	40891	54452	54452					-0.0476762309614287
TSSPPHSF	8	Unmodified	_TSSPPHSF_					0	0	0			REV__nc|ENSG00000136111|O60343-3|TBC1D4	REV__nc|ENSG00000136111|O60343-3|TBC1D4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	430.200867	858.387182	-0.25328	-0.00010896	1.1754	0.00050567	0.92216	0.00039671	430.2007684137944	31.003	0.40704	31.721	31.567	31.974	0.71857	0.023112	0.00085668	NaN	30.225	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2674600	+		55748	27243	40565	40891							-0.0476762309614287
TSSPPRLAM	9	Oxidation (M)	_TSSPPRLAM(Oxidation (M))_		TSSPPRLAM(1)		TSSPPRLAM(75)	0	0	1		nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX;nc|ENSG00000085224|P46100-6|ATRX;ATRX|p.A1790Vfs*21|1|0.33|ENSG00000085224|chrX:77618885-77618886|-/CACA|frameshift_variant	nc|ENSG00000085224|P46100-4|ATRX	nc|ENSG00000085224|P46100-4|ATRX	MULTI-SECPEP	A375_MHC_IP_R1	1	488.64971923828125	2	488.250034	974.485516	-0.29038	-0.00014178	-0.35121	-0.00017148	-0.6416	-0.00031326	488.2498404284882	24.928	0.55669	24.928	24.647	25.204	0					18	10	2	0	0	0	0.053904	1	7183	7183		74.929	31.071	1	12167000			55749	1808	40566	40892	54453	54453		63			-0.0027476284259364547
TSSPPRLAM	9	Oxidation (M)	_TSSPPRLAM(Oxidation (M))_		TSSPPRLAM(1)		TSSPPRLAM(56)	0	0	1		nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX;nc|ENSG00000085224|P46100-6|ATRX;ATRX|p.A1790Vfs*21|1|0.33|ENSG00000085224|chrX:77618885-77618886|-/CACA|frameshift_variant	nc|ENSG00000085224|P46100-4|ATRX	nc|ENSG00000085224|P46100-4|ATRX	MULTI-SECPEP	A375_MHC_IP_R1	1	488.6498718261719	2	488.250034	974.485516	-0.40209	-0.00019632	-0.075102	-3.6669E-05	-0.47719	-0.00023299	488.24993178563267	25.553	1.2695	25.553	25.204	26.474	0					42	24	2	0	0	0	0.20645	1	7476	7476		56.177	22.075	1	5975800			55750	1808	40566	40892	54454	54454		63			-0.0027476284259364547
TSSPPRLAM	9	Unmodified	_TSSPPRLAM_					0	0	0		nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX;nc|ENSG00000085224|P46100-6|ATRX;ATRX|p.A1790Vfs*21|1|0.33|ENSG00000085224|chrX:77618885-77618886|-/CACA|frameshift_variant	nc|ENSG00000085224|P46100-4|ATRX	nc|ENSG00000085224|P46100-4|ATRX	MULTI-MSMS	A375_MHC_IP_R2	2	480.6735534667969	2	480.252577	958.490601	-0.6053	-0.0002907	-0.9358	-0.00044942	-1.5411	-0.00074012	480.25254080202745	39.566	0.71045	40.34	40.016	40.727	0.77451					36	13	4	0	0	0	0.015701	3	14572	14572;14583;14627		88.954	50.98	1	9420600			55751	1808	40566	40893	54455;54456;54457	54455					0.009695410200151855
TSSPVEREL	9	Unmodified	_TSSPVEREL_					0	0	0			REV__ENSG00000176771|ENST00000409261|NCKAP5	REV__ENSG00000176771|ENST00000409261|NCKAP5	MULTI-SECPEP	A375_MHC_IP_R1	1	509.676513671875	2	509.264196	1016.51384	-0.60342	-0.0003073	1.4744	0.00075088	0.87103	0.00044358	509.2661696836355	52.944	0.55652	52.944	52.744	53.301	0					17	10	2	0	0	0	0.55359	1	18794	18794		15.847	3.3156	1	1145400	+		55752	21417	40567	40894	54458	54458					0.006242583383254896
TSSPVSRVV	9	Unmodified	_TSSPVSRVV_					0	0	0		ENSG00000225663|ENST00000455127|MCRIP1	ENSG00000225663|ENST00000455127|MCRIP1	ENSG00000225663|ENST00000455127|MCRIP1	MULTI-MSMS	A375_MHC_IP_R1	1	466.17169189453125	2	466.263999	930.513445	-0.42025	-0.00019595	-0.15323	-7.1445E-05	-0.57348	-0.00026739	466.2639312219124	32.964	0.55574	32.964	32.634	33.19	0					22	10	3	0	0	0	0.068071	1	10654	10654		57.249	21.122	1	8473700			55753	9698	40568	40895	54459	54459					0.04540883409151775
TSSQQWQSL	9	Unmodified	_TSSQQWQSL_					0	0	0		nc|ENSG00000179698|A6NE52-2|WDR97;ENSG00000179698|ENST00000323662|WDR97	nc|ENSG00000179698|A6NE52-2|WDR97	nc|ENSG00000179698|A6NE52-2|WDR97	MSMS	A375_MHC_IP_R1	1	532.7105102539062	2	532.753995	1063.49344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.684	1	27.684	27.184	28.184	0								0	0	0	0.15411	1	8433	8433		14.838	2.5976	1				55754	8245	40569	40896	54460	54460					-0.03576912321477721
TSSRIASATY	10	Unmodified	_TSSRIASATY_					0	0	0			REV__ENST00000589239.5_1_19:14080804-14104655:-|nuORF	REV__ENST00000589239.5_1_19:14080804-14104655:-|nuORF	MSMS	A375_MHC_IP_R2	2	528.6674194335938	2	528.769645	1055.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.896	1	51.65	51.15	52.15	0.75406								0	0	0	0.15288	1	19146	19146		11.495	1.3113	1		+		55755	18635	40570	40897	54461	54461					-0.0008033928738768736
TSSRLAYPRW	10	Unmodified	_TSSRLAYPRW_					0	0	0			REV__ENST00000366641.3_1_1:231557909-231558050:-|nuORF	REV__ENST00000366641.3_1_1:231557909-231558050:-|nuORF	MSMS	A375_MHC_IP_R1	1	412.9547119140625	3	412.887645	1235.64111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.297	1	32.297	31.797	32.797	0								0	0	0	0.15365	1	10423	10423		8.9762	1.0308	1		+		55756	23935	40571	40898	54462	54462					0.03271024003174716
TSSRPLSAL	9	Unmodified	_TSSRPLSAL_					0	0	0		ENST00000451486.5_1_22:29197956-29218101:+|nuORF;ENST00000458080.1_1_22:29196681-29218101:+|nuORF;ENST00000422972.1_1_22:29214364-29218101:+|nuORF	ENST00000451486.5_1_22:29197956-29218101:+|nuORF	ENST00000451486.5_1_22:29197956-29218101:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	466.6637268066406	2	466.263999	930.513445	-0.66276	-0.00030902	0.18546	8.6472E-05	-0.4773	-0.00022255	466.2639992875992	32.152	0.55886	32.889	32.654	33.213	0.73692					22	10	3	0	0	0	0.14572	1	11399	11399		62.573	7.7991	1	8584200			55757	11753	40572	40899	54463	54463					0.04540883409140406
TSSSGDWGLPN	11	Unmodified	_TSSSGDWGLPN_					0	0	0		NCOA3|p.P915S|1|0.49|ENSG00000124151|chr20:47639612-47639612|C/T|missense_variant	NCOA3|p.P915S|1|0.49|ENSG00000124151|chr20:47639612-47639612|C/T|missense_variant	NCOA3|p.P915S|1|0.49|ENSG00000124151|chr20:47639612-47639612|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	561.1482543945312	2	560.74891	1119.48327	-0.34643	-0.00019426	-0.27762	-0.00015567	-0.62404	-0.00034993	560.7487581324893	110.97	0.76769	110.97	110.65	111.41	0					39	14	4	0	0	0	0.72649	1	40688	40688		12.241	0	1	3705700			55758	14983	40573	40900	54464	54464					-0.07169520046704747
TSSSSVRVEW	10	Unmodified	_TSSSSVRVEW_					0	0	0		ENSG00000122873|ENST00000333926|CISD1	ENSG00000122873|ENST00000333926|CISD1	ENSG00000122873|ENST00000333926|CISD1	MULTI-MSMS	A375_MHC_IP_R1	1	569.6802368164062	2	569.280377	1136.5462	0.067954	3.8685E-05	-0.66719	-0.00037982	-0.59923	-0.00034113	569.2801358238355	48.479	0.30328	48.479	48.325	48.629	0					13	5	3	0	0	0	0.19516	1	17126	17126		49.742	33.593	1	2268900			55759	3812	40574	40901	54465	54465					-0.01660954258682068
TSSSSVRVEW	10	Unmodified	_TSSSSVRVEW_					0	0	0		ENSG00000122873|ENST00000333926|CISD1	ENSG00000122873|ENST00000333926|CISD1	ENSG00000122873|ENST00000333926|CISD1	MULTI-MATCH	A375_MHC_IP_R2	2		2	569.280377	1136.5462	-0.19887	-0.00011321	-0.14422	-8.2099E-05	-0.34309	-0.00019531	569.2807269658988	47.643	0.55799	48.404	48.225	48.783	0.76128	-0.037299	0.00037931	NaN	49.742	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1645800			55760	3812	40574	40901							-0.01660954258682068
TSSTFRNTY	9	Unmodified	_TSSTFRNTY_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-SECPEP	A375_MHC_IP_R1	1	539.1536865234375	2	538.753995	1075.49344	-0.66602	-0.00035882	-0.013309	-7.1704E-06	-0.67933	-0.00036599	538.7539536118327	57.736	0.71067	57.736	57.364	58.075	0					38	13	4	0	0	0	0.1277	1	20729	20729		46.021	8.047	1	8596500	+		55761	19379	40575	40902	54466	54466					-0.041289123214710344
TSSTFRNTY	9	Unmodified	_TSSTFRNTY_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-MSMS	A375_MHC_IP_R2	2	539.2316284179688	2	538.753995	1075.49344	-1.2901	-0.00069503	-0.0099091	-5.3386E-06	-1.3	-0.00070037	538.7539070837863	56.927	0.71405	57.678	57.356	58.071	0.75015					40	13	4	0	0	0	0.050162	2	21556	21468;21556		64.236	8.0593	1	10281000	+		55762	19379	40575	40902	54467;54468	54468					-0.041289123214710344
TSSTFRNTY	9	Unmodified	_TSSTFRNTY_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-SECPEP	A375_MHC_IP_R2	2	539.1531372070312	2	538.753995	1075.49344	-1.2901	-0.00069503	-0.0099091	-5.3386E-06	-1.3	-0.00070037	538.7539070837863	56.927	0.71405	57.678	57.356	58.071	0.75015					40	13	4	0	0	0	0.1277	1	21468	21468		46.021	8.047	1	10281000	+		55763	19379	40575	40902	54469	54469					-0.041289123214710344
TSSTSSGDGVD	11	Unmodified	_TSSTSSGDGVD_					0	0	0			REV__ENSG00000055813|ENST00000407595|CCDC85A	REV__ENSG00000055813|ENST00000407595|CCDC85A	MSMS	A375_MHC_IP_R2	2	506.6763000488281	2	506.706908	1011.39926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.003	1	61.748	61.248	62.248	0.74503								0	0	0	0.16108	1	23112	23112		13.042	0.51092	1		+		55764	16417	40576	40903	54470	54470					-0.10598095934267349
TSSYKIPSV	9	Unmodified	_TSSYKIPSV_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	A375_MHC_IP_R1	1	490.6844177246094	2	491.266207	980.517862	-0.2078	-0.00010209	0.066989	3.2909E-05	-0.14082	-6.9178E-05	491.2662399699821	50.071	0.66469	50.071	49.692	50.357	0					16	12	2	0	0	0	0.34746	1	17621	17621		31.268	0	1	1666600			55765	1612	40577	40904	54471	54471					0.02682347832035248
TSTENPLLKT	10	Unmodified	_TSTENPLLKT_					0	0	0			REV__nc|ENSG00000137672|Q9Y210-2|TRPC6	REV__nc|ENSG00000137672|Q9Y210-2|TRPC6	MSMS	A375_MHC_IP_R1	1	368.587158203125	3	368.536278	1102.587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.255	1	19.255	18.755	19.755	0								0	0	0	0.15365	1	4646	4646		8.2864	3.2389	1		+		55766	19024	40578	40905	54472	54472					0.03981387060957786
TSTGVIRDF	9	Unmodified	_TSTGVIRDF_					0	0	0		ENSG00000186501|ENST00000374076|TMEM222	ENSG00000186501|ENST00000374076|TMEM222	ENSG00000186501|ENST00000374076|TMEM222	MULTI-MSMS	A375_MHC_IP_R1	1	498.6737060546875	2	498.261456	994.50836	0.09096	4.5322E-05	-0.13963	-6.9574E-05	-0.048674	-2.4252E-05	498.2611280570378	48.856	0.50657	48.856	48.577	49.084	0					14	9	2	0	0	0	0.37338	1	17274	17274		26.021	7.8744	1	1819800			55767	8754	40579	40906	54473	54473					0.010885795465128467
TSTIKSTSTK	10	Unmodified	_TSTIKSTSTK_					0	0	0			REV__nc|ENSG00000118564|Q9UKA1-2|FBXL5	REV__nc|ENSG00000118564|Q9UKA1-2|FBXL5	MSMS	A375_MHC_IP_R1	1	352.264404296875	3	351.864394	1052.57135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.651	1	18.651	18.151	19.151	0								0	0	0	0.15642	1	4460	4460		0	0	1		+		55768	18048	40580	40907	54474	54474					0.04717100543894048
TSTKRKTCPW	10	Unmodified	_TSTKRKTCPW_					0	0	0		ENST00000515183.5_1_4:2826457-2831225:+|nuORF	ENST00000515183.5_1_4:2826457-2831225:+|nuORF	ENST00000515183.5_1_4:2826457-2831225:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	402.63494873046875	3	403.213252	1206.61793	-0.18782	-7.573E-05	0.074697	3.0119E-05	-0.11312	-4.5611E-05	403.2132802812203	35.595	0.30439	36.358	36.233	36.537	0.76338					8	5	2	0	0	0	0.94598	1	12916	12916		0.56317	0	1	1661000			55769	12947	40581	40908	54475	54475					0.022882618942048794
TSTTLRYGFL	10	Unmodified	_TSTTLRYGFL_					0	0	0		ENSG00000197408|ENST00000324071|CYP2B6	ENSG00000197408|ENST00000324071|CYP2B6	ENSG00000197408|ENST00000324071|CYP2B6	MULTI-SECPEP	A375_MHC_IP_R1	1	579.227294921875	2	579.811313	1157.60807	-0.28955	-0.00016788	-0.029335	-1.7009E-05	-0.31888	-0.00018489	579.8115175320096	76.75	0.35683	76.75	76.522	76.878	0					11	6	2	0	0	0	0.92957	1	28016	28016		6.2058	0	1	1799100			55770	9152	40582	40909	54476	54476					0.035573971604890176
TSTTRPVL	8	Unmodified	_TSTTRPVL_					0	0	0		ENST00000529955.5_1_11:66281964-66299243:+|nuORF;ENSG00000174483|ENST00000318312|BBS1;nc|ENSG00000174483|Q8NFJ9-2|BBS1;nc|ENSG00000174483|Q8NFJ9-3|BBS1	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	438.15283203125	2	437.753267	873.491981	-0.15519	-6.7935E-05	-0.32212	-0.00014101	-0.47731	-0.00020894	437.753133961185	28.719	0.55672	28.719	28.541	29.098	0					16	10	2	0	0	0	0.43631	1	8908	8908		51.63	13.656	1	5702700			55771	7886	40583	40910	54477	54477					0.050174983804254225
TSTTRPVL	8	Unmodified	_TSTTRPVL_					0	0	0		ENST00000529955.5_1_11:66281964-66299243:+|nuORF;ENSG00000174483|ENST00000318312|BBS1;nc|ENSG00000174483|Q8NFJ9-2|BBS1;nc|ENSG00000174483|Q8NFJ9-3|BBS1	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	438.153076171875	2	437.753267	873.491981	-0.42083	-0.00018422	0.10036	4.3931E-05	-0.32048	-0.00014029	437.7532597676435	28.053	0.35586	28.731	28.502	28.858	0.67857					11	6	2	0	0	0	0.43631	1	9647	9647		51.63	13.656	1	3502400			55772	7886	40583	40910	54478	54478					0.050174983804254225
TSTWTSRYS	9	Unmodified	_TSTWTSRYS_					0	0	0			REV__ENST00000345165.8_1_16:772772-773890:-|nuORF	REV__ENST00000345165.8_1_16:772772-773890:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	545.1537475585938	2	544.753995	1087.49344	-0.338	-0.00018413	0.5856	0.00031901	0.2476	0.00013488	544.7542041911131	42.818	0.76342	42.818	42.587	43.351	0					28	14	3	0	0	0	0.29981	1	14843	14843		30.637	3.0077	1	3617000	+		55773	23768	40584	40911	54479	54479					-0.04680912321487085
TSTWTSRYS	9	Unmodified	_TSTWTSRYS_					0	0	0			REV__ENST00000345165.8_1_16:772772-773890:-|nuORF	REV__ENST00000345165.8_1_16:772772-773890:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	545.1539306640625	2	544.753995	1087.49344	-0.29261	-0.0001594	0.2828	0.00015406	-0.0098151	-5.3468E-06	544.7542057795944	48.096	2.2831	48.096	46.952	49.235	0					86	44	2	0	0	0	0.22528	1	17121	17121		36.127	2.0246	1	6448100	+		55774	23768	40584	40911	54480	54480					-0.04680912321487085
TSTWTSRYS	9	Unmodified	_TSTWTSRYS_					0	0	0			REV__ENST00000345165.8_1_16:772772-773890:-|nuORF	REV__ENST00000345165.8_1_16:772772-773890:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	545.1533813476562	2	544.753995	1087.49344	-0.65658	-0.00035767	0.53818	0.00029318	-0.1184	-6.4498E-05	544.754334978099	47.481	2.1812	48.242	47.054	49.235	0.76128					84	42	2	0	0	0	0.22528	1	17964	17964		36.127	2.0246	1	7199400	+		55775	23768	40584	40911	54481	54481					-0.04680912321487085
TSTYDLPGPE	10	Unmodified	_TSTYDLPGPE_					0	0	0		nc|ENSG00000166963|P78559-2|MAP1A;ENSG00000166963|ENST00000300231|MAP1A	nc|ENSG00000166963|P78559-2|MAP1A	nc|ENSG00000166963|P78559-2|MAP1A	MSMS	A375_MHC_IP_R2	2	540.179931640625	2	540.248212	1078.48187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.244	1	46.01	45.51	46.51	0.76519								0	0	0	0.14925	1	16907	16907		19.257	3.4098	1				55776	7142	40585	40912	54482	54482					-0.05423154135473851
TSVESHVDID	10	Unmodified	_TSVESHVDID_					0	0	0			REV__nc|ENSG00000186377|Q8N118-3|CYP4X1	REV__nc|ENSG00000186377|Q8N118-3|CYP4X1	MULTI-MSMS	A375_MHC_IP_R1	1	551.6563720703125	2	551.256568	1100.49858	-0.59518	-0.0003281	0.4951	0.00027293	-0.10008	-5.517E-05	551.2569793627367	58.229	1.2191	58.229	57.873	59.092	0					39	23	3	0	0	0	0.69833	1	21016	21016		13.042	1.5478	1	2715400	+		55777	21967	40586	40913	54483	54483					-0.04764653249526418
TSVKAGIDDY	10	Unmodified	_TSVKAGIDDY_					0	0	0		tr|U7SFV5|U7SFV5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02248PE=4SV=1	tr|U7SFV5|U7SFV5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02248PE=4SV=1	tr|U7SFV5|U7SFV5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02248PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	534.1610717773438	2	534.764029	1067.5135	-0.97077	-0.00051913	-0.26267	-0.00014047	-1.2334	-0.0006596	534.7637124897185	26.817	0.30202	26.817	26.626	26.928	0					6	5	2	0	0	0	0.91556	1	8046	8046		6.2058	0	1	1166600			55778	29395	40587	40914	54484	54484					-0.017551613815157907
TSVLQWRV	8	Unmodified	_TSVLQWRV_					0	0	0		nc|ENSG00000125746|O95834-3|EML2;ENSG00000125746|ENST00000245925|EML2;nc|ENSG00000125746|O95834-2|EML2	nc|ENSG00000125746|O95834-3|EML2	nc|ENSG00000125746|O95834-3|EML2	MULTI-MSMS	A375_MHC_IP_R1	1	495.2109375	2	494.782359	987.550165	-0.54658	-0.00027044	0.16033	7.9329E-05	-0.38625	-0.00019111	494.78240076531284	27.817	0.60525	27.817	27.482	28.088	0					36	11	4	0	0	0	0.7338	1	8390	8390		24.674	6.5389	1	72589000			55779	14582	40588	40915	54485	54485					0.0558918002569726
TSVPDHVVW	9	Unmodified	_TSVPDHVVW_					0	0	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000185201|ENST00000616316|IFITM2;ENSG00000142089|ENST00000399808|IFITM3;ENST00000505282.1_1_4:66959972-66960239:+|nuORF	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MULTI-MSMS	A375_MHC_IP_R1	1	520.2243041992188	2	520.263999	1038.51345	-0.63833	-0.0003321	2.2958	0.0011944	1.6575	0.00086234	520.2653578941593	65.638	1.3204	65.638	64.954	66.275	0					68	25	4	0	0	0	0.29981	1	23925	23925		30.637	15.798	1	31122000			55780	5287	40589	40916	54486	54486					-0.0042711659086762666
TSVPDHVVW	9	Unmodified	_TSVPDHVVW_					0	0	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000185201|ENST00000616316|IFITM2;ENSG00000142089|ENST00000399808|IFITM3;ENST00000505282.1_1_4:66959972-66960239:+|nuORF	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MULTI-MSMS	A375_MHC_IP_R2	2	520.6635131835938	2	520.263999	1038.51345	-0.67004	-0.0003486	-0.17773	-9.2465E-05	-0.84776	-0.00044106	520.2638565513821	64.873	0.9653	65.612	65.257	66.222	0.73811					56	18	4	0	0	0	0.0025821	3	24548	24548;24633;24776		139.54	99.587	1	27787000			55781	5287	40589	40916	54487;54488;54489	54487					-0.0042711659086762666
TSVPQGHTW	9	Unmodified	_TSVPQGHTW_					0	0	0		ENSG00000181924|ENST00000355693|COA4;nc|ENSG00000181924|Q9NYJ1-2|COA4	ENSG00000181924|ENST00000355693|COA4	ENSG00000181924|ENST00000355693|COA4	MULTI-SECPEP	A375_MHC_IP_R1	1	507.14556884765625	2	506.745973	1011.47739	-0.43708	-0.00022149	-0.22882	-0.00011595	-0.66589	-0.00033744	506.7457808528808	32.04	0.61485	32.04	31.718	32.333	0					17	11	2	0	0	0	0.34746	1	10319	10319		31.268	7.2478	1	1876100			55782	8367	40590	40917	54490	54490					-0.027885737677138422
TSVRALFFF	9	Unmodified	_TSVRALFFF_					0	0	0			REV__ENST00000450253.6_1_4:99801895-99802249:-|nuORF	REV__ENST00000450253.6_1_4:99801895-99802249:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	543.6671752929688	2	544.300384	1086.58622	-0.6404	-0.00034857	-1.1579	-0.00063023	-1.7983	-0.0009788	544.2995760030117	58.575	0.40782	58.575	58.328	58.736	0					12	7	2	0	0	0	0.62767	1	21007	21007		11.64	0	1	739100	+		55783	24881	40591	40918	54491	54491					0.04638637202560858
TSWNTPEEW	9	Unmodified	_TSWNTPEEW_					0	0	0			REV__ENST00000378406.5_2_9:35660722-35661181:+|nuORF	REV__ENST00000378406.5_2_9:35660722-35661181:+|nuORF	MSMS	A375_MHC_IP_R2	2	575.1842651367188	2	575.246003	1148.47745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.008	1	55.759	55.259	56.259	0.75075								0	0	0	0.15486	1	20770	20770		12.532	1.7076	1		+		55784	20138	40592	40919	54492	54492					-0.09084618558404145
TSWQGFCFW	9	Unmodified	_TSWQGFCFW_					0	0	0		ENST00000502773.5_1_4:157689087-157693884:-|nuORF	ENST00000502773.5_1_4:157689087-157693884:-|nuORF	ENST00000502773.5_1_4:157689087-157693884:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	581.7137451171875	2	581.244752	1160.47495	-0.27905	-0.0001622	-0.18945	-0.00011011	-0.4685	-0.00027231	581.2445877755865	77.084	1.1184	77.084	76.572	77.69	0					66	21	4	0	0	0	0.4867	1	28149	28149		20.454	0	1	25217000			55785	12792	40593	40920	54493	54493					-0.09886745497010452
TSWSKKLKA	9	Unmodified	_TSWSKKLKA_					0	0	0			REV__ENSG00000178694|ENST00000314622|NSUN3	REV__ENSG00000178694|ENST00000314622|NSUN3	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6401977539062	2	524.811116	1047.60768	-0.37612	-0.00019739	-0.81844	-0.00042953	-1.1946	-0.00062692	524.8106210031387	42.325	0.30361	42.325	42.233	42.537	0					8	5	2	0	0	0	0.75466	1	14729	14729		1.8442	0	1	1073100	+		55786	21514	40594	40921	54494	54494					0.08578022231267823
TSYGTYRHF	9	Unmodified	_TSYGTYRHF_					0	0	0			REV__ENST00000278612.8_1_11:108058836-108062880:-|nuORF	REV__ENST00000278612.8_1_11:108058836-108062880:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	378.2648010253906	3	377.845446	1130.51451	0.11404	4.3088E-05	0.42352	0.00016002	0.53755	0.00020311	377.84553653746633	32.51	0.25129	32.51	32.383	32.634	0					8	4	2	0	0	0	0.73008	1	10493	10493		12.241	0.74595	1	1587900	+		55787	23309	40595	40922	54495	54495					-0.045529022219625404
TSYGTYRHF	9	Unmodified	_TSYGTYRHF_					0	0	0			REV__ENST00000278612.8_1_11:108058836-108062880:-|nuORF	REV__ENST00000278612.8_1_11:108058836-108062880:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	377.845446	1130.51451	0.13996	5.2884E-05	0.11446	4.3249E-05	0.25442	9.6133E-05	377.84541257247497	31.747	0.25477	32.484	32.3	32.555	0.73691	-0.01271	-0.00011157	NaN	12.241	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1194800	+		55788	23309	40595	40922							-0.045529022219625404
TSYKGKKIL	9	Unmodified	_TSYKGKKIL_					0	0	0		BRCA2|p.P606L|1|0.22|ENSG00000139618|chr13:32333295-32333295|C/T|missense_variant	BRCA2|p.P606L|1|0.22|ENSG00000139618|chr13:32333295-32333295|C/T|missense_variant	BRCA2|p.P606L|1|0.22|ENSG00000139618|chr13:32333295-32333295|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	519.7203979492188	2	519.321317	1036.62808	-1.0799	-0.00056083	-0.40559	-0.00021063	-1.4855	-0.00077146	519.3211173737275	59.125	0.70884	59.872	59.54	60.249	0.74714					30	13	4	0	0	0	0.39388	1	22354	22354		25.399	0	1	9634100			55789	248	40596	40923	54496	54496					0.11123192891091094
TSYLGKEHW	9	Unmodified	_TSYLGKEHW_					0	0	0		ENSG00000116786|ENST00000375799|PLEKHM2;nc|ENSG00000116786|Q8IWE5-2|PLEKHM2;ENST00000477849.1_1_1:16056358-16058475:+|nuORF	ENSG00000116786|ENST00000375799|PLEKHM2	ENSG00000116786|ENST00000375799|PLEKHM2	MULTI-MSMS	A375_MHC_IP_R1	1	374.4334411621094	3	374.185579	1119.53491	0.091923	3.4396E-05	0.98652	0.00036914	1.0784	0.00040354	374.18607374036264	36.755	0.75977	36.755	36.439	37.198	0					17	14	2	0	0	0	0.55471	1	12342	12342		12.175	5.9829	1	3680700			55790	3432	40597	40924	54497	54497					-0.0200773156213927
TSYLGKEHW	9	Unmodified	_TSYLGKEHW_					0	0	0		ENSG00000116786|ENST00000375799|PLEKHM2;nc|ENSG00000116786|Q8IWE5-2|PLEKHM2;ENST00000477849.1_1_1:16056358-16058475:+|nuORF	ENSG00000116786|ENST00000375799|PLEKHM2	ENSG00000116786|ENST00000375799|PLEKHM2	MULTI-SECPEP	A375_MHC_IP_R2	2	374.5860290527344	3	374.185579	1119.53491	0.20283	7.5897E-05	1.0711	0.00040079	1.2739	0.00047668	374.18604982633286	35.985	0.71416	36.748	36.283	36.997	0.76338					25	13	3	0	0	0	0.27742	1	13063	13063		34.222	24.678	1	2683200			55791	3432	40597	40924	54498	54498					-0.0200773156213927
TSYSNYYRTW	10	Unmodified	_TSYSNYYRTW_					0	0	0		ENSG00000057252|ENST00000367619|SOAT1;nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1	ENSG00000057252|ENST00000367619|SOAT1	ENSG00000057252|ENST00000367619|SOAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	670.1847534179688	2	670.798934	1339.58332	-0.63147	-0.00042359	-0.10566	-7.088E-05	-0.73713	-0.00049447	670.7989417604988	59.219	0.45733	59.219	58.99	59.448	0					16	8	2	0	0	0	0.47871	1	21271	21271		44.392	27.826	1	3975500			55792	1282	40598	40925	54499	54499					-0.07289282712918066
TSYSNYYRTW	10	Unmodified	_TSYSNYYRTW_					0	0	0		ENSG00000057252|ENST00000367619|SOAT1;nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1	ENSG00000057252|ENST00000367619|SOAT1	ENSG00000057252|ENST00000367619|SOAT1	MULTI-SECPEP	A375_MHC_IP_R2	2	671.1983032226562	2	670.798934	1339.58332	-1.0959	-0.00073511	-0.13438	-9.0145E-05	-1.2303	-0.00082525	670.7988157496291	58.635	0.4568	59.384	59.135	59.592	0.74894					16	8	2	0	0	0	0.024623	1	22172	22172		94.909	69.918	1	3902200			55793	1282	40598	40925	54500	54500					-0.07289282712918066
TSYYFWKL	8	Unmodified	_TSYYFWKL_					0	0	0			REV__ENSG00000170881|ENST00000303545|RNF139	REV__ENSG00000170881|ENST00000303545|RNF139	MULTI-SECPEP	A375_MHC_IP_R1	1	369.2576599121094	3	369.855171	1106.54368	0.42105	0.00015573	-1.9264	-0.00071248	-1.5053	-0.00055675	369.8536311718523	42.408	0.65748	42.408	42.082	42.739	0					19	12	3	0	0	0	0.972	1	14663	14663		3.2813	1.3749	1	975060	+		55794	21028	40599	40926	54501	54501					-0.00532757925657279
TTAFSVWTKVP	11	Unmodified	_TTAFSVWTKVP_					0	0	0		nc|ENSG00000116299|Q6UXG2-3|ELAPOR1;nc|ENSG00000116299|Q6UXG2-2|ELAPOR1;nc|ENSG00000116299|Q6UXG2-4|ELAPOR1;ENSG00000116299|ENST00000369939|ELAPOR1;ENST00000490758.6_1_1:109656894-109730836:+|nuORF;ENST00000527996.5_1_1:109656894-109745573:+|nuORF	nc|ENSG00000116299|Q6UXG2-3|ELAPOR1	nc|ENSG00000116299|Q6UXG2-3|ELAPOR1	MULTI-MSMS	A375_MHC_IP_R2	2	413.6259460449219	3	412.892284	1235.65502	-0.73765	-0.00030457	-2.1764	-0.0008986	-2.914	-0.0012032	412.89089503240893	28.841	0.95127	29.539	29.234	30.185	0.69872					24	18	2	0	0	0	0.47047	1	10030	10030		22.109	3.7692	1	10957000			55795	3394	40600	40927	54502	54502					0.04662256711594637
TTAIAEAW	8	Unmodified	_TTAIAEAW_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENST00000530835.1_1_11:90016856-90017168:+|nuORF;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;TUBA3C|p.R390C|3|0.16|ENSG00000198033|chr13:19174048-19174048|G/A|missense_variant	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	A375_MHC_IP_R1	1	862.8300170898438	1	862.430509	861.423233	-0.35535	-0.00030647	-0.15734	-0.00013569	-0.51269	-0.00044216	862.4303548310274	76.272	0.55558	76.272	75.966	76.522	0					14	10	2	0	0	0	0.32803	1	27860	27860		56.541	22.354	1	1616700			55796	3846	40601	40928	54503	54503					-0.01302165919298659
TTAIAEAW	8	Unmodified	_TTAIAEAW_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENST00000530835.1_1_11:90016856-90017168:+|nuORF;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;TUBA3C|p.R390C|3|0.16|ENSG00000198033|chr13:19174048-19174048|G/A|missense_variant	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-SECPEP	A375_MHC_IP_R2	2	862.2612915039062	1	862.430509	861.423233	-0.62961	-0.00054299	-0.22236	-0.00019177	-0.85196	-0.00073476	862.4304787843439	75.508	0.5115	76.249	75.976	76.487	0.74052					14	9	2	0	0	0	0.73563	1	28559	28559		44.407	18.066	1	1874400			55797	3846	40601	40928	54504	54504					-0.01302165919298659
TTALIAAALA	10	Unmodified	_TTALIAAALA_					0	0	0			REV__nc|ENSG00000121289|Q96ST8-3|CEP89	REV__nc|ENSG00000121289|Q96ST8-3|CEP89	MULTI-MSMS	A375_MHC_IP_R1	1	459.68023681640625	2	458.279118	914.543683	-0.31413	-0.00014396	-0.49072	-0.00022489	-0.80485	-0.00036885	458.2789963968568	76.539	1.5203	76.539	75.966	77.486	0					60	29	4	0	0	0	0.72335	1	27778	27778		1.8442	0	1	13650000	+		55798	18155	40602	40929	54505	54505					0.08299242074303947
TTALPTRIAYY	11	Unmodified	_TTALPTRIAYY_					0	0	0		ENSG00000169508|ENST00000376414|GPR183	ENSG00000169508|ENST00000376414|GPR183	ENSG00000169508|ENST00000376414|GPR183	MULTI-MSMS	A375_MHC_IP_R2	2	424.2981262207031	3	423.899439	1268.67649	-0.41768	-0.00017705	-3.3574	-0.0014232	-3.775	-0.0016002	423.89799709082826	18.905	0.36019	19.508	19.423	19.783	0.60308					16	8	3	0	0	0	0.72964	1	5747	5747		9.2438	0.49199	1	11432000			55799	7411	40603	40930	54506	54506					0.052896417403189844
TTAPEFRRW	9	Unmodified	_TTAPEFRRW_					0	0	0		ENSG00000140740|ENST00000268379|UQCRC2;ENST00000563711.5_1_16:21973998-21987565:+|nuORF;ENST00000567757.1_1_16:21974091-21974253:+|nuORF	ENSG00000140740|ENST00000268379|UQCRC2	ENSG00000140740|ENST00000268379|UQCRC2	MULTI-SECPEP	A375_MHC_IP_R1	1	388.9366760253906	3	388.536724	1162.58834	0.023594	9.167E-06	-0.61603	-0.00023935	-0.59243	-0.00023018	388.5366967886202	39.64	1.0669	39.64	38.983	40.05	0					54	20	5	0	0	0	0.20645	1	13585	13585		43.982	22.182	1	5735500			55800	5181	40604	40931	54507	54507					0.013550659403563259
TTAPEFRRW	9	Unmodified	_TTAPEFRRW_					0	0	0		ENSG00000140740|ENST00000268379|UQCRC2;ENST00000563711.5_1_16:21973998-21987565:+|nuORF;ENST00000567757.1_1_16:21974091-21974253:+|nuORF	ENSG00000140740|ENST00000268379|UQCRC2	ENSG00000140740|ENST00000268379|UQCRC2	MULTI-SECPEP	A375_MHC_IP_R2	2	388.93634033203125	3	388.536724	1162.58834	-0.41221	-0.00016016	-0.12098	-4.7007E-05	-0.5332	-0.00020717	388.5366539951307	38.832	0.56332	39.606	39.351	39.914	0.77451					25	10	3	0	0	0	0.14572	1	14330	14330		49.527	29.54	1	5756800			55801	5181	40604	40931	54508	54508					0.013550659403563259
TTAPPRTTTR	10	Unmodified	_TTAPPRTTTR_					0	0	0		nc|ENSG00000144868|Q6UXF1-2|TMEM108;ENST00000511388.1_1_3:133098579-133114827:+|nuORF;ENSG00000144868|ENST00000321871|TMEM108	nc|ENSG00000144868|Q6UXF1-2|TMEM108	nc|ENSG00000144868|Q6UXF1-2|TMEM108	MSMS	A375_MHC_IP_R1	1	367.75732421875	3	367.871883	1100.59382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.377	1	18.377	17.877	18.877	0								0	0	0	0.15642	1	4382	4382		0	0	1				55802	5525	40605	40932	54509	54509					0.047547447321449
TTATEALWHY	10	Unmodified	_TTATEALWHY_					0	0	0		ENST00000216277.12_1_14:96968904-96986484:+|nuORF	ENST00000216277.12_1_14:96968904-96986484:+|nuORF	ENST00000216277.12_1_14:96968904-96986484:+|nuORF	MSMS	A375_MHC_IP_R1	1	596.5369262695312	2	596.785296	1191.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.852	1	72.852	72.352	73.352	0								0	0	0	0.14925	1	26514	26514		19.257	8.4331	1				55803	10094	40606	40933	54510	54510					-0.032077662532856266
TTATPMSWRPV	11	Unmodified	_TTATPMSWRPV_					0	0	0			REV__ENST00000246912.8_1_17:40719338-40720499:+|nuORF	REV__ENST00000246912.8_1_17:40719338-40720499:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	416.63201904296875	3	416.213141	1245.61759	0.18263	7.6014E-05	-1.1294	-0.00047008	-0.94678	-0.00039406	416.54622881624294	19.661	0.30609	19.661	19.521	19.827	0					7	5	2	0	0	0	0.9574	1	4984	4984		11.631	4.1543	1	432710	+		55804	23115	40607	40934	54511	54511					0.004608421743341751
TTDDKAVVLKR	11	Unmodified	_TTDDKAVVLKR_					0	0	0		ENST00000525083.5_1_11:126145223-126146937:+|nuORF;nc|ENSG00000110074|Q96CU9-2|FOXRED1;nc|ENSG00000110074|Q96CU9-3|FOXRED1;ENSG00000110074|ENST00000263578|FOXRED1	ENST00000525083.5_1_11:126145223-126146937:+|nuORF	ENST00000525083.5_1_11:126145223-126146937:+|nuORF	MSMS	A375_MHC_IP_R1	1	623.300537109375	2	623.361702	1244.70885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.935	1	72.935	72.435	73.435	0								0	0	0	0.16179	1	26545	26545		9.3831	2.0939	1				55805	2917	40608	40935	54512	54512					0.096284291432994
TTDDWKDFLY	10	Unmodified	_TTDDWKDFLY_					0	0	0		ENST00000548375.5_1_12:96405582-96408866:-|nuORF;nc|ENSG00000111144|P09960-3|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H	ENST00000548375.5_1_12:96405582-96408866:-|nuORF	ENST00000548375.5_1_12:96405582-96408866:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	652.695556640625	2	652.295693	1302.57683	-0.24575	-0.0001603	0.1238	8.0755E-05	-0.12195	-7.9545E-05	652.2956975244767	105.91	0.8166	105.91	105.55	106.37	0					44	15	4	0	0	0	0.021562	1	38853	38853		111.31	87.288	1	16377000			55806	2967	40609	40936	54513	54513					-0.0623522066427995
TTDDWKDFLY	10	Unmodified	_TTDDWKDFLY_					0	0	0		ENST00000548375.5_1_12:96405582-96408866:-|nuORF;nc|ENSG00000111144|P09960-3|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H	ENST00000548375.5_1_12:96405582-96408866:-|nuORF	ENST00000548375.5_1_12:96405582-96408866:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	653.8443603515625	2	652.295693	1302.57683	-0.74555	-0.00048632	0.18872	0.0001231	-0.55683	-0.00036322	652.2957108649755	105.23	0.96735	106	105.62	106.58	0.76308					49	18	4	0	0	0	0.69306	1	39823	39823		13.906	5.9959	1	14554000			55807	2967	40609	40936	54514	54514					-0.0623522066427995
TTDENKVPY	9	Unmodified	_TTDENKVPY_					0	0	0		nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1	nc|ENSG00000109534|Q9NY12-2|GAR1	nc|ENSG00000109534|Q9NY12-2|GAR1	MULTI-SECPEP	A375_MHC_IP_R1	1	534.1561279296875	2	533.756204	1065.49785	-0.85665	-0.00045724	1.1898	0.00063504	0.33311	0.0001778	533.7563257638857	27.002	1.0593	27.002	26.322	27.381	0					34	20	3	0	0	0	0.036758	1	8129	8129		89.401	47.306	1	18818000			55808	2874	40610	40937	54515	54515					-0.03227447898552782
TTDENKVPY	9	Unmodified	_TTDENKVPY_					0	0	0		nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1	nc|ENSG00000109534|Q9NY12-2|GAR1	nc|ENSG00000109534|Q9NY12-2|GAR1	MULTI-SECPEP	A375_MHC_IP_R2	2	534.15576171875	2	533.756204	1065.49785	-1.1366	-0.00060666	0.89418	0.00047727	-0.24241	-0.00012939	533.7561892982386	26.494	0.96596	27.154	26.5	27.466	0.65992					30	18	3	0	0	0	0.042716	1	8950	8950		76.825	34.73	1	12146000			55809	2874	40610	40937	54516	54516					-0.03227447898552782
TTDFAMQNVL	10	Oxidation (M)	_TTDFAM(Oxidation (M))QNVL_		TTDFAM(1)QNVL		TTDFAM(54)QNVL	0	0	1		ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	MULTI-MSMS	A375_MHC_IP_R1	1	578.6705322265625	2	578.271164	1154.52777	-0.41371	-0.00023924	-0.89823	-0.00051942	-1.3119	-0.00075866	578.2704133760022	131.04	0.40567	131.04	130.92	131.33	0					13	7	3	0	0	0	0.15514	1	50532	50532		53.833	13.883	1	5176800			55810	5217	40611	40938	54517	54517		279			-0.04330832224900405
TTDFAMQNVL	10	Oxidation (M)	_TTDFAM(Oxidation (M))QNVL_		TTDFAM(1)QNVL		TTDFAM(63)QNVL	0	0	1		ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	MULTI-MSMS	A375_MHC_IP_R2	2	578.6694946289062	2	578.271164	1154.52777	-0.20949	-0.00012114	-2.1816	-0.0012615	-2.391	-0.0013827	578.2696934079148	130.82	0.50774	131.03	130.91	131.41	0.2142					14	9	3	0	0	0	0.10503	1	51489	51489		62.573	10.304	1	9257400			55811	5217	40611	40938	54518	54518		279			-0.04330832224900405
TTDFAMQNVL	10	Oxidation (M)	_TTDFAM(Oxidation (M))QNVL_					0	0	1		ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	578.271164	1154.52777	-0.20949	-0.00012114	-2.1816	-0.0012615	-2.391	-0.0013827	578.2696934079148	130.82	0.50774	131.03	130.91	131.41	0.2142	-0.0043653	-0.00090329	NaN	62.573	14	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9257400			55812	5217	40611	40938				279			-0.04330832224900405
TTDFIFNLY	9	Unmodified	_TTDFIFNLY_					0	0	0		ENST00000547581.5_1_12:48529049-48539488:+|nuORF;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;nc|ENSG00000152556|P08237-2|PFKM	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	568.1805419921875	2	567.279315	1132.54408	-0.37402	-0.00021217	1.5093	0.00085617	1.1352	0.000644	567.2786505472516	130.87	0.96619	131.08	130.65	131.62	0.21419					43	18	4	0	0	0	0.005759	2	51461	51461;51645		133.7	81.009	1	116250000			55813	5973	40612	40939	54519;54520	54519					-0.016893829964601537
TTDFIYQLY	9	Unmodified	_TTDFIYQLY_					0	0	0		ENSG00000067057|ENST00000381125|PFKP;nc|ENSG00000067057|Q01813-2|PFKP	ENSG00000067057|ENST00000381125|PFKP	ENSG00000067057|ENST00000381125|PFKP	MULTI-MSMS	A375_MHC_IP_R1	1	582.6845092773438	2	582.284597	1162.55464	-0.86278	-0.00050239	0.42726	0.00024879	-0.43553	-0.0002536	582.2846908980879	123.49	0.55464	123.49	123.23	123.79	0					18	10	2	0	0	0	0.0097266	1	46141	46141		111.29	57.454	1	20028000			55814	1424	40613	40940	54521	54521					-0.02013400342048044
TTDFPGNYSGY	11	Unmodified	_TTDFPGNYSGY_					0	0	0		ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000512472.5_1_6:43484832-43487226:+|nuORF	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	611.6559448242188	2	611.256568	1220.49858	-0.22189	-0.00013563	-0.16657	-0.00010182	-0.38846	-0.00023745	611.2564170863809	72.716	1.6726	72.716	71.917	73.589	0					106	32	4	0	0	0	1.295E-26	4	26475	26243;26328;26475;26693		228.37	200.74	1	35045000			55815	7601	40614	40941	54522;54523;54524;54525	54524					-0.10284653249505027
TTDFPGNYSGY	11	Unmodified	_TTDFPGNYSGY_					0	0	0		ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000512472.5_1_6:43484832-43487226:+|nuORF	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	ENST00000481352.6_1_6:43484832-43487644:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	611.656005859375	2	611.256568	1220.49858	-0.7139	-0.00043638	-0.10741	-6.5654E-05	-0.82131	-0.00050203	611.256428919756	72.156	2.2841	72.89	72.111	74.395	0.73421					125	44	4	0	0	0	5.100199999999999E-21	4	27422	27195;27422;27527;27642		214.05	186.42	1	40025000			55816	7601	40614	40941	54526;54527;54528;54529	54527					-0.10284653249505027
TTDGLGKVYY	10	Unmodified	_TTDGLGKVYY_					0	0	0		ENSG00000116962|ENST00000264187|NID1;nc|ENSG00000116962|P14543-2|NID1;NID1|p.R123Q|1|0.24|ENSG00000116962|chr1:236048847-236048847|C/T|missense_variant	ENSG00000116962|ENST00000264187|NID1	ENSG00000116962|ENST00000264187|NID1	MULTI-MSMS	A375_MHC_IP_R1	1	559.181640625	2	558.782222	1115.54989	-0.54249	-0.00030313	0.26994	0.00015084	-0.27255	-0.00015229	558.7822532687071	50.378	0.66233	50.378	50.101	50.764	0					32	12	4	0	0	0	2.8699E-05	1	17835	17835		160.69	94.233	1	9374300			55817	3446	40615	40942	54530	54530					-0.0032628448479954386
TTDGLGKVYY	10	Unmodified	_TTDGLGKVYY_					0	0	0		ENSG00000116962|ENST00000264187|NID1;nc|ENSG00000116962|P14543-2|NID1;NID1|p.R123Q|1|0.24|ENSG00000116962|chr1:236048847-236048847|C/T|missense_variant	ENSG00000116962|ENST00000264187|NID1	ENSG00000116962|ENST00000264187|NID1	MULTI-MSMS	A375_MHC_IP_R2	2	559.1819458007812	2	558.782222	1115.54989	-0.97592	-0.00054533	0.59837	0.00033436	-0.37756	-0.00021097	558.7823519604826	49.729	0.71175	50.483	50.142	50.854	0.75406					35	13	4	0	0	0	0.0042118	1	18653	18653		136.39	78.67	1	8511300			55818	3446	40615	40942	54531	54531					-0.0032628448479954386
TTDKEVVEGMK	11	Unmodified	_TTDKEVVEGMK_					0	0	0			REV__AKAP9|p.E929K|1|0.47|ENSG00000127914|chr7:92002702-92002702|G/A|missense_variant	REV__AKAP9|p.E929K|1|0.47|ENSG00000127914|chr7:92002702-92002702|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	619.2100830078125	2	618.810653	1235.60675	-0.61783	-0.00038232	0.56398	0.000349	-0.053857	-3.3327E-05	618.8109007603472	108.94	1.0169	109.68	109.32	110.33	0.74684					39	19	3	0	0	0	0.43152	1	41131	41131		36.506	3.0613	1	4892500	+		55819	15351	40616	40943	54532	54532					-0.0016260499060081202
TTDLELIKY	9	Unmodified	_TTDLELIKY_					0	0	0		ENSG00000164109|ENST00000296509|MAD2L1;nc|ENSG00000164109|Q13257-2|MAD2L1;ENST00000511295.1_1_4:120986776-120987958:-|nuORF	ENSG00000164109|ENST00000296509|MAD2L1	ENSG00000164109|ENST00000296509|MAD2L1	MULTI-SECPEP	A375_MHC_IP_R1	1	548.7000732421875	2	548.300247	1094.58594	-0.62753	-0.00034407	-0.062385	-3.4206E-05	-0.68991	-0.00037828	548.3001085287954	76.775	0.76318	76.775	76.421	77.184	0					31	14	3	0	0	0	0.10535	1	27977	27977		92.653	30.081	1	4930900			55820	6781	40617	40944	54533	54533					0.042431726920540314
TTDLELIKY	9	Unmodified	_TTDLELIKY_					0	0	0		ENSG00000164109|ENST00000296509|MAD2L1;nc|ENSG00000164109|Q13257-2|MAD2L1;ENST00000511295.1_1_4:120986776-120987958:-|nuORF	ENSG00000164109|ENST00000296509|MAD2L1	ENSG00000164109|ENST00000296509|MAD2L1	MULTI-SECPEP	A375_MHC_IP_R2	2	548.699462890625	2	548.300247	1094.58594	-0.7721	-0.00042334	-0.25795	-0.00014143	-1.03	-0.00056478	548.3002747274869	76.05	0.60801	76.791	76.487	77.095	0.74052					29	11	3	0	0	0	0.023846	1	28834	28834		125.53	56.424	1	4862400			55821	6781	40617	40944	54534	54534					0.042431726920540314
TTDLFGRDLSY	11	Unmodified	_TTDLFGRDLSY_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-SECPEP	A375_MHC_IP_R1	1	644.7139892578125	2	644.314417	1286.61428	-0.6628	-0.00042705	0.18799	0.00012113	-0.47481	-0.00030593	644.314526372286	85.437	1.4714	85.437	85.005	86.477	0					88	28	5	0	0	0	0.00095239	1	31238	31238		157.49	127.65	1	100840000			55822	7439	40618	40945	54535	54535					-0.017561293986545934
TTDLFGRDLSY	11	Unmodified	_TTDLFGRDLSY_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-SECPEP	A375_MHC_IP_R2	2	644.7138671875	2	644.314417	1286.61428	-0.57634	-0.00037134	-0.097704	-6.2952E-05	-0.67404	-0.00043429	644.3143470080115	84.81	1.4227	85.547	85.12	86.543	0.73601					91	27	5	0	0	0	0.00032421	1	32147	32147		168.9	119.35	1	92428000			55823	7439	40618	40945	54536	54536					-0.017561293986545934
TTDLSFLDKY	10	Unmodified	_TTDLSFLDKY_					0	0	0		ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-3|UBA6;nc|ENSG00000033178|A0AVT1-4|UBA6;ENST00000429659.7_1_4:68529542-68566852:-|nuORF	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	MULTI-SECPEP	A375_MHC_IP_R1	1	602.2002563476562	2	601.800611	1201.58667	-0.58745	-0.00035353	0.44697	0.00026899	-0.14048	-8.4539E-05	601.8007032328516	90.556	0.5603	90.556	90.285	90.845	0					15	10	3	0	0	0	0.47871	1	33306	33306		44.392	29.987	1	2351600			55824	1123	40619	40946	54537	54537					-0.006060326589022225
TTDLSFLDKY	10	Unmodified	_TTDLSFLDKY_					0	0	0		ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-3|UBA6;nc|ENSG00000033178|A0AVT1-4|UBA6;ENST00000429659.7_1_4:68529542-68566852:-|nuORF	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	MULTI-SECPEP	A375_MHC_IP_R2	2	601.1884155273438	2	601.800611	1201.58667	-0.39289	-0.00023644	0.27869	0.00016772	-0.11419	-6.8721E-05	601.8005481642151	89.924	0.45958	90.656	90.442	90.902	0.7318					12	8	2	0	0	0	0.35635	1	34240	34240		44.392	21.656	1	1367100			55825	1123	40619	40946	54538	54538					-0.006060326589022225
TTDMDDCS	8	Unmodified	_TTDMDDCS_					0	0	0		ENSG00000221886|ENST00000408953|FAM200C	ENSG00000221886|ENST00000408953|FAM200C	ENSG00000221886|ENST00000408953|FAM200C	MSMS	A375_MHC_IP_R1	1	444.1640625	2	444.141501	886.268448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.91	1	103.91	103.41	104.41	0								0	0	0	0.16876	1	38156	38156		0.79363	0	1				55826	9669	40620	40947	54539	54539					-0.17923526178333304
TTDMDDCS	8	Unmodified	_TTDMDDCS_					0	0	0		ENSG00000221886|ENST00000408953|FAM200C	ENSG00000221886|ENST00000408953|FAM200C	ENSG00000221886|ENST00000408953|FAM200C	MSMS	A375_MHC_IP_R2	2	444.1640930175781	2	444.141501	886.268448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.48	1	104.24	103.74	104.74	0.76428								0	0	0	0.16876	1	39189	39189		0.79363	0	1				55827	9669	40620	40947	54540	54540					-0.17923526178333304
TTDNDHQCY	9	Unmodified	_TTDNDHQCY_					0	0	0			REV__nc|ENSG00000054654|Q8WXH0|SYNE2	REV__nc|ENSG00000054654|Q8WXH0|SYNE2	MSMS	A375_MHC_IP_R2	2	548.699462890625	2	548.703645	1095.39274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.956	1	76.696	76.196	77.196	0.74052								0	0	0	0.1521	1	28834	28834		18.135	8.7519	1		+		55828	16407	40621	40948	54541	54541					-0.15114312366631566
TTDPKKFQY	9	Unmodified	_TTDPKKFQY_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant;HMCN1|p.P2051Lfs*3|1|0.45|ENSG00000143341|chr1:186039851-186039861|CTGTTTCTAGT/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	A375_MHC_IP_R1	1	376.9292297363281	3	376.529235	1126.56587	0.25581	9.6319E-05	-0.089757	-3.3796E-05	0.16605	6.2522E-05	376.52912334720776	25.486	1.1175	25.486	25.204	26.322	0					40	21	3	0	0	0	0.0098409	1	7423	7423		93.166	68.175	1	36787000			55829	5371	40622	40949	54542	54542					0.007654217520894235
TTDPKKFQY	9	Unmodified	_TTDPKKFQY_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant;HMCN1|p.P2051Lfs*3|1|0.45|ENSG00000143341|chr1:186039851-186039861|CTGTTTCTAGT/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	A375_MHC_IP_R1	1	564.6897583007812	2	564.290214	1126.56587	-0.4939	-0.0002787	-0.018586	-1.0488E-05	-0.51249	-0.00028919	564.2901059362891	25.486	0.66191	25.486	25.255	25.917	0					41	12	4	0	0	0	0.013591	1	7422	7422		118.07	72.329	1	58759000			55830	5371	40622	40949	54543	54543					0.007654217520894235
TTDPKKFQY	9	Unmodified	_TTDPKKFQY_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant;HMCN1|p.P2051Lfs*3|1|0.45|ENSG00000143341|chr1:186039851-186039861|CTGTTTCTAGT/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	A375_MHC_IP_R2	2	376.92901611328125	3	376.529235	1126.56587	-0.19478	-7.3339E-05	0.066687	2.511E-05	-0.12809	-4.8229E-05	376.5292245092119	24.95	0.66196	25.594	25.314	25.976	0.64368					30	12	3	0	0	0	0.01574	1	8264	8264		70.332	55.084	1	39010000			55831	5371	40622	40949	54544	54544					0.007654217520894235
TTDPKKFQY	9	Unmodified	_TTDPKKFQY_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant;HMCN1|p.P2051Lfs*3|1|0.45|ENSG00000143341|chr1:186039851-186039861|CTGTTTCTAGT/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	A375_MHC_IP_R2	2	564.689453125	2	564.290214	1126.56587	-0.90732	-0.00051199	0.12345	6.966E-05	-0.78387	-0.00044233	564.2901956147145	24.95	0.91423	25.594	25.314	26.229	0.64368					40	17	4	0	0	0	0.011357	1	8259	8259		125.53	57.448	1	58318000			55832	5371	40622	40949	54545	54545					0.007654217520894235
TTDPNSTFRCV	11	Unmodified	_TTDPNSTFRCV_					0	0	0		ENSG00000013441|ENST00000321356|CLK1;nc|ENSG00000013441|P49759-3|CLK1;ENST00000473565.5_1_2:201718031-201724542:-|nuORF;ENST00000461981.5_1_2:201722417-201724542:-|nuORF	ENSG00000013441|ENST00000321356|CLK1	ENSG00000013441|ENST00000321356|CLK1	MULTI-SECPEP	A375_MHC_IP_R1	1	621.4785766601562	2	620.78497	1239.55539	-0.32034	-0.00019886	-1.509	-0.00093675	-1.8293	-0.0011356	621.2859001271495	72.635	0.40706	72.635	72.423	72.83	0					18	7	3	0	0	0	0.98591	1	26381	26381		9.3831	6.6479	1	2072300			55833	1022	40623	40950	54546	54546					-0.054809289646300385
TTDPWLPNI	9	Unmodified	_TTDPWLPNI_					0	0	0			REV__nc|ENSG00000154265|Q8WWZ7-3|ABCA5	REV__nc|ENSG00000154265|Q8WWZ7-3|ABCA5	MSMS	A375_MHC_IP_R2	2	528.6710205078125	2	528.771657	1055.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.111	1	34.863	34.363	35.363	0.75225								0	0	0	0.14359	1	12273	12273		28.487	0.85804	1		+		55834	19877	40624	40951	54547	54547					0.00321750206330762
TTDRCEMNEC	10	Unmodified	_TTDRCEMNEC_					0	0	0			REV__ENSG00000178031|ENST00000380548|ADAMTSL1	REV__ENSG00000178031|ENST00000380548|ADAMTSL1	MSMS	A375_MHC_IP_R2	2	601.1884155273438	2	601.217748	1200.42094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.987	1	90.719	90.219	91.219	0.7318								0	0	0	0.15435	1	34240	34240		6.7232	2.3939	1		+		55835	21480	40625	40952	54548	54548					-0.17125073773217991
TTDSSYGQNY	10	Unmodified	_TTDSSYGQNY_					0	0	0		nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	MULTI-MSMS	A375_MHC_IP_R1	1	568.6306762695312	2	568.23055	1134.44655	-0.7657	-0.00043509	0.0023	1.3069E-06	-0.7634	-0.00043379	568.2305447402806	29.478	0.89762	29.478	29.252	30.15	0					42	17	4	0	0	0	6.5404E-07	4	9215	9215;9330;9367;9476		199.75	171.26	1	131610000			55836	9982	40626	40953	54549;54550;54551;54552	54549					-0.11529816663278325
TTDSSYGQNY	10	Unmodified	_TTDSSYGQNY_					0	0	0		nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	MULTI-MSMS	A375_MHC_IP_R1	1	1135.852294921875	1	1135.45382	1134.44655	-0.37772	-0.00042889	-0.61821	-0.00070195	-0.99593	-0.0011308	1135.4530994109186	29.478	0.6461	29.478	29.302	29.949	0					31	12	3	0	0	0	0.0064649	1	9348	9348		103.75	103.75	1	105280000			55837	9982	40626	40953	54553	54553					-0.11529816663278325
TTDSSYGQNY	10	Unmodified	_TTDSSYGQNY_					0	0	0		nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	MULTI-MSMS	A375_MHC_IP_R2	2	568.6300659179688	2	568.23055	1134.44655	-1.1712	-0.00066552	-0.020617	-1.1715E-05	-1.1918	-0.00067724	568.2304934254634	29.001	1.0004	29.7	29.434	30.434	0.69872					48	19	4	0	0	0	3.2779E-05	2	10047	10047;10281		174.73	146.24	1	117510000			55838	9982	40626	40953	54554;54555	54554					-0.11529816663278325
TTDSSYGQNY	10	Unmodified	_TTDSSYGQNY_					0	0	0		nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	MULTI-MSMS	A375_MHC_IP_R2	2	1135.852294921875	1	1135.45382	1134.44655	-0.67698	-0.00076867	-0.65913	-0.00074841	-1.3361	-0.0015171	1135.4529653018847	28.947	0.85156	29.645	29.434	30.286	0.69872					40	16	4	0	0	0	0.0064649	1	10066	10066		103.75	103.75	1	72463000			55839	9982	40626	40953	54556	54556					-0.11529816663278325
TTDTTNITKY	10	Unmodified	_TTDTTNITKY_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-MSMS	A375_MHC_IP_R1	1	579.6871948242188	2	579.287868	1156.56118	-0.53058	-0.00030736	0.12996	7.5287E-05	-0.40062	-0.00023207	579.2878768861381	30.276	0.60374	30.276	30.099	30.703	0					18	11	2	0	0	0	2.711E-05	1	9603	9603		158.08	106.66	1	14654000			55840	9912	40627	40954	54557	54557					-0.010835071813289687
TTDTTNITKY	10	Unmodified	_TTDTTNITKY_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-MSMS	A375_MHC_IP_R2	2	579.6876831054688	2	579.287868	1156.56118	-0.79399	-0.00045995	0.40004	0.00023174	-0.39396	-0.00022821	579.2880478315323	29.657	0.55406	30.355	30.134	30.688	0.69872					25	10	3	0	0	0	0.004656	1	10355	10355		135.72	84.303	1	13218000			55841	9912	40627	40954	54558	54558					-0.010835071813289687
TTDTVIRSY	9	Unmodified	_TTDTVIRSY_					0	0	0		nc|ENSG00000185917|Q9NVD3-4|SETD4;nc|ENSG00000185917|Q9NVD3-3|SETD4;ENSG00000185917|ENST00000332131|SETD4	nc|ENSG00000185917|Q9NVD3-4|SETD4	nc|ENSG00000185917|Q9NVD3-4|SETD4	MULTI-MSMS	A375_MHC_IP_R1	1	528.67138671875	2	528.272021	1054.52949	-0.51768	-0.00027347	0.21407	0.00011309	-0.30361	-0.00016039	528.2716952795985	34.771	0.81335	34.771	34.353	35.167	0					22	15	2	0	0	0	0.0094735	1	11517	11517		107.1	49.378	1	3473800			55842	8706	40628	40955	54559	54559					0.0044054485538254085
TTDVVLLLG	9	Unmodified	_TTDVVLLLG_					0	0	0			REV__ENST00000517448.5_1_5:154210261-154230090:-|nuORF	REV__ENST00000517448.5_1_5:154210261-154230090:-|nuORF	MSMS	A375_MHC_IP_R1	1	466.1770935058594	2	465.778951	929.543348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.99	1	130.99	130.49	131.49	0								0	0	0	0.15486	1	50488	50488		12.532	2.3482	1		+		55843	20980	40629	40956	54560	54560					0.07575822354488082
TTEDEENSGF	10	Unmodified	_TTEDEENSGF_					0	0	0			REV__nc|ENSG00000136114|Q9NS62-2|THSD1	REV__nc|ENSG00000136114|Q9NS62-2|THSD1	MSMS	A375_MHC_IP_R2	2	564.6536254882812	2	564.720015	1127.42548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.788	1	83.531	83.031	84.031	0.74293								0	0	0	0.15332	1	31453	31453		10.074	2.1638	1		+		55844	18917	40630	40957	54561	54561					-0.1331382676278281
TTEEEKWSHM	10	Unmodified	_TTEEEKWSHM_					0	0	0		ENSG00000080007|ENST00000370336|DDX43	ENSG00000080007|ENST00000370336|DDX43	ENSG00000080007|ENST00000370336|DDX43	MSMS	A375_MHC_IP_R2	2	639.1969604492188	2	639.276977	1276.5394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.607	1	44.378	43.878	44.878	0.77096								0	0	0	0.14862	1	16251	16251		20.454	2.3073	1				55845	1707	40631	40958	54562	54562					-0.08780635201560472
TTEERTQLY	9	Unmodified	_TTEERTQLY_					0	0	0		ENSG00000143643|ENST00000366661|TTC13;nc|ENSG00000143643|Q8NBP0-2|TTC13;ENST00000471302.2_1_1:231047214-231057243:-|nuORF	ENSG00000143643|ENST00000366661|TTC13	ENSG00000143643|ENST00000366661|TTC13	MULTI-SECPEP	A375_MHC_IP_R1	1	570.195556640625	2	570.78021	1139.54587	-0.4204	-0.00023996	-0.071732	-4.0943E-05	-0.49214	-0.0002809	570.7802862668092	28.864	0.76102	28.864	28.592	29.353	0					35	13	4	0	0	0	0.0090786	1	8972	8972		157.8	76.182	1	52026000			55846	5421	40632	40959	54563	54563					-0.0183237397850462
TTEERTQLY	9	Unmodified	_TTEERTQLY_					0	0	0		ENSG00000143643|ENST00000366661|TTC13;nc|ENSG00000143643|Q8NBP0-2|TTC13;ENST00000471302.2_1_1:231047214-231057243:-|nuORF	ENSG00000143643|ENST00000366661|TTC13	ENSG00000143643|ENST00000366661|TTC13	MULTI-MSMS	A375_MHC_IP_R2	2	571.1795043945312	2	570.78021	1139.54587	-0.59	-0.00033676	-0.37568	-0.00021443	-0.96568	-0.00055119	570.7800619089977	28.253	0.55836	28.932	28.655	29.214	0.67857					32	10	4	0	0	0	0.010078	1	9699	9699		176.43	119.18	1	53617000			55847	5421	40632	40959	54564	54564					-0.0183237397850462
TTEESLRNYY	10	Unmodified	_TTEESLRNYY_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	A375_MHC_IP_R1	1	639.1972045898438	2	638.296224	1274.5779	-0.39854	-0.00025439	-0.045644	-2.9135E-05	-0.44418	-0.00028352	638.2961659140137	44.384	0.91823	44.384	43.909	44.827	0					48	17	4	0	0	0	0.0038254	1	15440	15440		99.755	64.823	1	19864000			55848	3793	40633	40960	54565	54565					-0.048410062953507804
TTEESLRNYY	10	Unmodified	_TTEESLRNYY_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MATCH	A375_MHC_IP_R2	2		2	638.296224	1274.5779	-0.57393	-0.00036634	-0.12055	-7.6947E-05	-0.69448	-0.00044329	638.2960874213472	43.718	0.80756	44.487	44.126	44.934	0.7691	0.051385	-4.8273E-05	NaN	99.755	49	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20836000			55849	3793	40633	40960							-0.048410062953507804
TTEGHIVSV	9	Unmodified	_TTEGHIVSV_					0	0	0		ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	MULTI-SECPEP	A375_MHC_IP_R1	1	472.1480712890625	2	471.748182	941.481811	-0.46518	-0.00021945	-0.84221	-0.00039731	-1.3074	-0.00061676	471.7479881653405	95.75	0.95994	95.75	95.109	96.069	0					42	18	3	0	0	0	0.69504	1	35172	35172		1.8442	0	1	5795700			55850	4550	40634	40961	54566	54566					0.00872890655205083
TTEKRGIV	8	Unmodified	_TTEKRGIV_					0	0	0		SI|p.G1476E|2|0.35|ENSG00000090402|chr3:164998653-164998653|C/T|missense_variant	SI|p.G1476E|2|0.35|ENSG00000090402|chr3:164998653-164998653|C/T|missense_variant	SI|p.G1476E|2|0.35|ENSG00000090402|chr3:164998653-164998653|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	452.6661071777344	2	452.266542	902.51853	-0.34175	-0.00015456	-0.064349	-2.9103E-05	-0.40609	-0.00018366	452.26644476338953	44.596	0.45646	45.365	45.138	45.594	0.7691					16	8	2	0	0	0	0.73622	1	16638	16638		24.021	1.2843	1	2958200			55851	29157	40635	40962	54567	54567					0.06337187271765288
TTELMHAQSA	10	Unmodified	_TTELMHAQSA_					0	0	0			REV__ENSG00000135749|ENST00000258229|PCNX2	REV__ENSG00000135749|ENST00000258229|PCNX2	MULTI-MSMS	A375_MHC_IP_R2	2	363.9069519042969	3	363.506213	1087.49681	-0.18455	-6.7085E-05	1.6171	0.00058783	1.4326	0.00052075	363.50731364460165	51.061	0.85989	51.815	51.462	52.322	0.75406					34	16	3	0	0	0	0.70012	1	19249	19249		7.4771	0	1	2107200	+		55852	18881	40636	40963	54568	54568					-0.04343985539117057
TTELNDTVY	9	Unmodified	_TTELNDTVY_					0	0	0		ENSG00000177853|ENST00000316045|ZNF518A	ENSG00000177853|ENST00000316045|ZNF518A	ENSG00000177853|ENST00000316045|ZNF518A	MULTI-MSMS	A375_MHC_IP_R2	2	528.6658325195312	2	528.248212	1054.48187	-1.0185	-0.00053803	0.067984	3.5912E-05	-0.95053	-0.00050212	528.2482169384033	29.667	1.2139	30.365	29.88	31.094	0.69872					51	23	3	0	0	0	0.43185	1	10312	10312		23.148	2.6948	1	19756000			55853	8113	40637	40964	54569	54569					-0.04319154135487224
TTERFPSKEK	10	Unmodified	_TTERFPSKEK_					0	0	0			REV__ENSG00000164151|ENST00000296564|ICE1	REV__ENSG00000164151|ENST00000296564|ICE1	MULTI-MSMS	A375_MHC_IP_R1	1	408.9399108886719	3	408.21906	1221.63535	-0.42224	-0.00017237	-0.058228	-2.377E-05	-0.48047	-0.00019614	408.21904588438105	23.726	0.50746	23.726	23.584	24.092	0					20	9	3	0	0	0	0.68889	1	6576	6576		14.218	7.1811	1	3030500	+		55854	20458	40638	40965	54570	54570					0.03339880700855247
TTERFPSKEK	10	Unmodified	_TTERFPSKEK_					0	0	0			REV__ENSG00000164151|ENST00000296564|ICE1	REV__ENSG00000164151|ENST00000296564|ICE1	MULTI-SECPEP	A375_MHC_IP_R1	1	408.9399108886719	3	408.21906	1221.63535	-0.42224	-0.00017237	-0.058228	-2.377E-05	-0.48047	-0.00019614	408.21904588438105	23.726	0.50746	23.726	23.584	24.092	0					20	9	3	0	0	0	0.91057	1	6576	6576		14.218	14.218	1	3030500	+		55855	20458	40638	40965	54571	54571					0.03339880700855247
TTESEVMKY	9	Oxidation (M)	_TTESEVM(Oxidation (M))KY_		TTESEVM(1)KY		TTESEVM(52)KY	0	0	1		ENSG00000100714|ENST00000652337|MTHFD1;ENST00000555252.5_1_14:64855058-64907131:+|nuORF	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MULTI-MSMS	A375_MHC_IP_R1	1	552.6492309570312	2	552.249897	1102.48524	-0.60858	-0.00033609	0.26257	0.000145	-0.34601	-0.00019109	552.249833846347	23.221	0.2555	23.221	23.074	23.33	0					7	4	2	0	0	0	0.094655	1	6363	6363		51.63	26.23	1	3511800			55856	2212	40639	40966	54572	54572		87			-0.06190227353113187
TTESEVMKY	9	Oxidation (M)	_TTESEVM(Oxidation (M))KY_		TTESEVM(1)KY		TTESEVM(44)KY	0	0	1		ENSG00000100714|ENST00000652337|MTHFD1;ENST00000555252.5_1_14:64855058-64907131:+|nuORF	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MULTI-MSMS	A375_MHC_IP_R2	2	552.6498413085938	2	552.249897	1102.48524	-1.1117	-0.00061393	0.59434	0.00032822	-0.51735	-0.00028571	552.2502718368243	20.992	0.35503	21.605	21.364	21.719	0.61232					10	6	2	0	0	0	0.13845	1	6581	6581		43.772	25.626	1	1606600			55857	2212	40639	40966	54573	54573		87			-0.06190227353113187
TTETCTIVGP	10	Unmodified	_TTETCTIVGP_					0	0	0		ENSG00000126882|ENST00000372271|FAM78A	ENSG00000126882|ENST00000372271|FAM78A	ENSG00000126882|ENST00000372271|FAM78A	MULTI-MSMS	A375_MHC_IP_R2	2	512.1976928710938	2	511.247157	1020.47976	-0.94463	-0.00048294	-0.80467	-0.00041139	-1.7493	-0.00089433	511.2462580794557	35.686	0.76079	36.449	35.98	36.741	0.76338					35	14	4	0	0	0	0.70329	1	12780	12780		10.824	0	1	5834300			55858	4068	40640	40967	54574	54574					-0.02965906144913788
TTETCTIVGP	10	Unmodified	_TTETCTIVGP_					0	0	0		ENSG00000126882|ENST00000372271|FAM78A	ENSG00000126882|ENST00000372271|FAM78A	ENSG00000126882|ENST00000372271|FAM78A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	511.247157	1020.47976	-0.94463	-0.00048294	-0.80467	-0.00041139	-1.7493	-0.00089433	511.2462580794557	35.686	0.76079	36.449	35.98	36.741	0.76338	-0.14322	0.00054361	NaN	10.824	35	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5834300			55859	4068	40640	40967							-0.02965906144913788
TTEVHPELY	9	Unmodified	_TTEVHPELY_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;ENST00000486268.5_1_20:34129846-34130758:+|nuORF;nc|ENSG00000125991|Q9Y282-2|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-SECPEP	A375_MHC_IP_R1	1	545.1661987304688	2	544.766571	1087.51859	-0.10609	-5.7796E-05	-0.15129	-8.242E-05	-0.25739	-0.00014022	544.7664413378726	44.623	1.0172	44.623	44.267	45.284	0					59	19	4	0	0	0	2.679E-08	1	15502	15502		205.38	130.96	1	92843000			55860	4017	40641	40968	54575	54575					-0.021668575189096373
TTEVHPELY	9	Unmodified	_TTEVHPELY_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;ENST00000486268.5_1_20:34129846-34130758:+|nuORF;nc|ENSG00000125991|Q9Y282-2|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MSMS	A375_MHC_IP_R2	2	545.1658935546875	2	544.766571	1087.51859	-0.60894	-0.00033173	-0.056274	-3.0656E-05	-0.66522	-0.00036239	544.7665064183054	43.836	1.1116	44.605	44.228	45.34	0.7691					70	21	5	0	0	0	0.0022313	1	16490	16490		141.83	95.806	1	94760000			55861	4017	40641	40968	54576	54576					-0.021668575189096373
TTEVHPELY	9	Unmodified	_TTEVHPELY_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;ENST00000486268.5_1_20:34129846-34130758:+|nuORF;nc|ENSG00000125991|Q9Y282-2|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-SECPEP	A375_MHC_IP_R2	2	1088.1690673828125	1	1088.52587	1087.51859	0.29426	0.00032031	-0.29382	-0.00031983	0.000441	4.8004E-07	1088.5252184555216	43.794	0.55418	44.563	44.329	44.883	0.76909					23	10	3	0	0	0	0.79191	1	16239	16239		6.7232	3.1267	1	3876400			55862	4017	40641	40968	54577	54577					-0.021668575189096373
TTEVHPELY	9	Unmodified	_TTEVHPELY_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;ENST00000486268.5_1_20:34129846-34130758:+|nuORF;nc|ENSG00000125991|Q9Y282-2|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MATCH	A375_MHC_IP_R1	1		1	1088.52587	1087.51859	0.55373	0.00060275	-0.64342	-0.00070037	-0.089681	-9.762E-05	1088.5252118740907	44.609	0.45752	44.609	44.37	44.827	0	0.023227	-0.00026206	NaN	6.7232	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4461000			55863	4017	40641	40968							-0.021668575189096373
TTEWRFINSYF	11	Unmodified	_TTEWRFINSYF_					0	0	0			REV__ENST00000486457.5_1_3:113557756-113601627:+|nuORF	REV__ENST00000486457.5_1_3:113557756-113601627:+|nuORF	MSMS	A375_MHC_IP_R2	2	488.4692077636719	3	488.569981	1462.68811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.884	1	63.627	63.127	64.127	0.74263								0	0	0	0.1632	1	23840	23840		2.084	0.17759	1		+		55864	16911	40642	40969	54578	54578					-0.024721612363237
TTFDKEFLL	9	Unmodified	_TTFDKEFLL_					0	0	0		ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-SECPEP	A375_MHC_IP_R1	1	557.69482421875	2	557.294965	1112.57538	-0.48604	-0.00027087	-0.058672	-3.2698E-05	-0.54471	-0.00030357	557.2948942329507	96.557	0.71117	96.557	96.274	96.985	0					22	13	2	0	0	0	0.042716	1	35467	35467		96.367	60.24	1	2337000			55865	1066	40643	40970	54579	54579					0.023591900376231933
TTFDKEFLL	9	Unmodified	_TTFDKEFLL_					0	0	0		ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	A375_MHC_IP_R2	2	557.6946411132812	2	557.294965	1112.57538	-0.64073	-0.00035708	0.31717	0.00017676	-0.32356	-0.00018032	557.294906963641	95.691	0.66083	96.441	96.144	96.805	0.75044					25	12	3	0	0	0	0.02331	1	36339	36339		80.676	42.702	1	3289200			55866	1066	40643	40970	54580	54580					0.023591900376231933
TTFLLFSQK	9	Unmodified	_TTFLLFSQK_					0	0	0		ENSG00000162337|ENST00000294304|LRP5;ENST00000529993.5_1_11:68171724-68216535:+|nuORF;ENSG00000070018|ENST00000261349|LRP6	ENSG00000162337|ENST00000294304|LRP5;ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MULTI-MSMS	A375_MHC_IP_R1	1	362.4678955078125	3	362.206092	1083.59645	0.31824	0.00011527	-0.43516	-0.00015762	-0.11692	-4.235E-05	362.20583610356385	49.931	0.76556	49.931	49.591	50.357	0					42	14	4	0	0	0	0.69317	1	17555	17555		7.609	2.7119	1	15056000			55867	6518;1486	40644	40971	54581	54581					0.05799200137153093
TTFPRPVTV	9	Unmodified	_TTFPRPVTV_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;NONO|p.P226L|1|1.0|ENSG00000147140|chrX:71296591-71296591|C/T|missense_variant	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-SECPEP	A375_MHC_IP_R1	1	509.6898193359375	2	509.290017	1016.56548	-0.40566	-0.0002066	0.64428	0.00032812	0.23862	0.00012153	509.2905315789464	57.348	1.5749	57.348	57.059	58.633	0					67	30	4	0	0	0	0.13244	1	20550	20550		67.838	31.711	1	24627000			55868	5662	40645	40972	54582	54582					0.057860468229023354
TTFPRPVTV	9	Unmodified	_TTFPRPVTV_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;NONO|p.P226L|1|1.0|ENSG00000147140|chrX:71296591-71296591|C/T|missense_variant	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MSMS	A375_MHC_IP_R2	2	509.6894836425781	2	509.290017	1016.56548	-1.1216	-0.00057121	0.78989	0.00040228	-0.33169	-0.00016892	509.2904844985779	56.477	1.1727	57.227	56.948	58.121	0.75015					60	22	4	0	0	0	0.062639	1	21312	21312		59.368	30.287	1	26381000			55869	5662	40645	40972	54583	54583					0.057860468229023354
TTFRDKTEF	9	Unmodified	_TTFRDKTEF_					0	0	0		nc|ENSG00000089195|Q9UJA5-3|TRMT6;nc|ENSG00000089195|Q9UJA5-2|TRMT6;ENSG00000089195|ENST00000203001|TRMT6;ENST00000473131.5_1_20:5924535-5931132:-|nuORF	nc|ENSG00000089195|Q9UJA5-3|TRMT6	nc|ENSG00000089195|Q9UJA5-3|TRMT6	MULTI-SECPEP	A375_MHC_IP_R1	1	382.29595947265625	3	382.192623	1143.55604	0.028692	1.0966E-05	0.016207	6.194E-06	0.044899	1.716E-05	382.19263962949304	29.051	0.60776	29.051	28.795	29.403	0					17	11	2	0	0	0	0.34746	1	9033	9033		35.612	22.74	1	6039300			55870	1920	40646	40973	54584	54584					-0.009997662532896356
TTFRDKTEF	9	Unmodified	_TTFRDKTEF_					0	0	0		nc|ENSG00000089195|Q9UJA5-3|TRMT6;nc|ENSG00000089195|Q9UJA5-2|TRMT6;ENSG00000089195|ENST00000203001|TRMT6;ENST00000473131.5_1_20:5924535-5931132:-|nuORF	nc|ENSG00000089195|Q9UJA5-3|TRMT6	nc|ENSG00000089195|Q9UJA5-3|TRMT6	MULTI-SECPEP	A375_MHC_IP_R2	2	382.5925598144531	3	382.192623	1143.55604	-0.44414	-0.00016975	0.22038	8.4226E-05	-0.22376	-8.5519E-05	382.1927396653156	28.319	0.4567	28.997	28.757	29.214	0.67857					14	8	2	0	0	0	0.49205	1	9785	9785		26.021	15.122	1	6128600			55871	1920	40646	40973	54585	54585					-0.009997662532896356
TTFRHNLKP	9	Unmodified	_TTFRHNLKP_					0	0	0			REV__ENSG00000147231|ENST00000372548|RADX	REV__ENSG00000147231|ENST00000372548|RADX	MULTI-SECPEP	A375_MHC_IP_R1	1	372.2768249511719	3	371.876969	1112.60908	0.24947	9.2774E-05	0.42752	0.00015899	0.677	0.00025176	371.8771760065982	36.262	0.45637	36.262	35.982	36.439	0					15	8	2	0	0	0	0.73363	1	12111	12111		7.1017	0.47135	1	4122800	+		55872	19579	40647	40974	54586	54586					0.05727656320027563
TTFSNSQRW	9	Unmodified	_TTFSNSQRW_					0	0	0		nc|ENSG00000117280|O14966-3|RAB29;nc|ENSG00000117280|O14966-2|RAB29;ENSG00000117280|ENST00000367139|RAB29;ENST00000492534.1_1_1:205740542-205740761:-|nuORF	nc|ENSG00000117280|O14966-3|RAB29	nc|ENSG00000117280|O14966-3|RAB29	MULTI-SECPEP	A375_MHC_IP_R1	1	564.1675415039062	2	563.767437	1125.52032	-0.59597	-0.00033599	0.23251	0.00013108	-0.36346	-0.00020491	563.767569376398	37.916	0.56158	37.916	37.607	38.168	0					21	10	3	0	0	0	0.074405	1	12833	12833		79.596	39.639	1	4789300			55873	3469	40648	40975	54587	54587					-0.037418037102725066
TTFSNSQRW	9	Unmodified	_TTFSNSQRW_					0	0	0		nc|ENSG00000117280|O14966-3|RAB29;nc|ENSG00000117280|O14966-2|RAB29;ENSG00000117280|ENST00000367139|RAB29;ENST00000492534.1_1_1:205740542-205740761:-|nuORF	nc|ENSG00000117280|O14966-3|RAB29	nc|ENSG00000117280|O14966-3|RAB29	MULTI-MSMS	A375_MHC_IP_R2	2	564.1673583984375	2	563.767437	1125.52032	-1.1173	-0.00062987	0.57209	0.00032253	-0.54517	-0.00030735	563.767805500572	37.113	0.76222	37.884	37.513	38.275	0.7709					30	14	3	0	0	0	0.0094735	1	13561	13561		107.1	53.267	1	4486800			55874	3469	40648	40975	54588	54588					-0.037418037102725066
TTFVDLWALVL	11	Unmodified	_TTFVDLWALVL_					0	0	0		nc|ENSG00000159337|Q86XP0-2|PLA2G4D;ENSG00000159337|ENST00000290472|PLA2G4D	nc|ENSG00000159337|Q86XP0-2|PLA2G4D	nc|ENSG00000159337|Q86XP0-2|PLA2G4D	MSMS	A375_MHC_IP_R2	2	426.6246032714844	3	426.576185	1276.70673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.511	1	45.28	44.78	45.78	0.7691								0	0	0	0.16263	1	16614	16614		5.0475	0.64137	1				55875	6365	40649	40976	54589	54589					0.07944000405495899
TTGEQELQYDY	11	Unmodified	_TTGEQELQYDY_					0	0	0			REV__nc|ENSG00000134444|Q9P260|RELCH	REV__nc|ENSG00000134444|Q9P260|RELCH	MULTI-MSMS	A375_MHC_IP_R1	1	674.190673828125	2	673.790972	1345.56739	-0.63141	-0.00042544	0.49448	0.00033318	-0.13693	-9.2262E-05	673.7913899200407	60.265	0.55908	60.265	59.955	60.514	0					17	10	2	0	0	0	0.63737	1	21693	21693		20.415	8.1739	1	2557500	+		55876	18780	40650	40977	54590	54590					-0.09157033740461884
TTGEQELQYDY	11	Unmodified	_TTGEQELQYDY_					0	0	0			REV__nc|ENSG00000134444|Q9P260|RELCH	REV__nc|ENSG00000134444|Q9P260|RELCH	MULTI-MSMS	A375_MHC_IP_R2	2	674.1904296875	2	673.790972	1345.56739	-1.0849	-0.00073097	1.2976	0.0008743	0.21273	0.00014334	673.7911378934062	59.67	0.7061	60.417	60.047	60.753	0.74714					25	13	3	0	0	0	0.56199	1	22635	22635		26.268	13.226	1	2001100	+		55877	18780	40650	40977	54591	54591					-0.09157033740461884
TTGEQELQYDY	11	Unmodified	_TTGEQELQYDY_					0	0	0			REV__nc|ENSG00000134444|Q9P260|RELCH	REV__nc|ENSG00000134444|Q9P260|RELCH	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	673.790972	1345.56739	-0.63141	-0.00042544	0.49448	0.00033318	-0.13693	-9.2262E-05	673.7913899200407	60.265	0.55908	60.265	59.955	60.514	0	-0.076069	-4.3734E-05	NaN	26.268	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2557500	+		55878	18780	40650	40977							-0.09157033740461884
TTGGGGGG	8	Unmodified	_TTGGGGGG_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.P3283Nfs*30|1|0.22|ENSG00000118058|chr11:118505746-118505767|TCCCCAACATCATAAAAAGATC/-|frameshift_variant;ENST00000593562.5_2_19:42569897-42573539:-|nuORF;KMT2A|p.S997Pfs*5|1|0.21|ENSG00000118058|chr11:118474147-118474162|TAGCACTGTTAAACAT/-|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-SECPEP	A375_MHC_IP_R2	2	562.706787109375	1	563.24198	562.234704	-0.3881	-0.00021859	3.9331	0.0022153	3.545	0.0019967	563.2449053299421	110.05	0.30788	110.79	110.53	110.83	0.73692					6	5	2	0	0	0	0.972	1	41527	41527		0	0	1	732400			55879	3522	40651	40978	54592	54592					-0.06392398772891283
TTGRQCNMLC	10	Unmodified	_TTGRQCNMLC_					0	0	0			REV__ENST00000560148.5_2_15:74495378-74501835:+|nuORF	REV__ENST00000560148.5_2_15:74495378-74501835:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	564.1675415039062	2	563.743736	1125.47292	-0.77331	-0.00043595	-0.087503	-4.9329E-05	-0.86082	-0.00048528	563.7437373791515	38.15	0.51067	38.15	37.913	38.423	0					19	9	3	0	0	0	0.71118	1	12833	12833		7.2892	7.2892	1	5093900	+		55880	26163	40652	40979	54593	54593					-0.08479865568779132
TTGTARRW	8	Unmodified	_TTGTARRW_					0	0	0			REV__tr|U7T148|U7T148_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00895PE=3SV=1	REV__tr|U7T148|U7T148_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00895PE=3SV=1	MSMS	A375_MHC_IP_R2	2	474.67950439453125	2	474.754133	947.493713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.338	1	51.092	50.592	51.592	0.75406								0	0	0	0.16876	1	18931	18931		32.117	6.7177	1		+		55881	28694	40653	40980	54594	54594					0.01786552189048507
TTGTFLLTV	9	Unmodified	_TTGTFLLTV_					0	0	0		ENSG00000127990|ENST00000648936|SGCE;nc|ENSG00000127990|O43556-3|SGCE;nc|ENSG00000127990|O43556-4|SGCE	ENSG00000127990|ENST00000648936|SGCE	ENSG00000127990|ENST00000648936|SGCE	MULTI-MSMS	A375_MHC_IP_R2	2	952.2597045898438	1	952.534975	951.527698	-0.054506	-5.1919E-05	0.85505	0.00081446	0.80054	0.00076254	952.5352184773376	91.13	0.35472	91.864	91.666	92.021	0.7345					11	6	2	0	0	0	0.58047	1	34618	34618		15.847	2.3393	1	1681100			55882	4116	40654	40981	54595	54595					0.04999535837430358
TTGTNVLFVY	10	Unmodified	_TTGTNVLFVY_					0	0	0			REV__nc|ENSG00000023287|Q8TDY2-2|RB1CC1	REV__nc|ENSG00000023287|Q8TDY2-2|RB1CC1	MULTI-MSMS	A375_MHC_IP_R2	2	558.1890869140625	2	557.792589	1113.57063	-0.95072	-0.0005303	-1.6603	-0.00092608	-2.611	-0.0014564	557.7893460560659	49.292	2.0305	50.049	49.03	51.061	0.75737					90	39	3	0	0	0	0.42311	1	18637	18637		32.786	2.9451	1	4020000	+		55883	16277	40655	40982	54596	54596					0.01838305894852965
TTHETEGFGY	10	Unmodified	_TTHETEGFGY_					0	0	0			REV__ENSG00000257743|ENST00000477922|MGAM2	REV__ENSG00000257743|ENST00000477922|MGAM2	MULTI-MSMS	A375_MHC_IP_R1	1	571.663818359375	2	571.24346	1140.47237	-0.35326	-0.0002018	0.080379	4.5916E-05	-0.27289	-0.00015588	571.2430806169764	33.201	0.4043	33.201	32.989	33.393	0					16	7	3	0	0	0	0.70496	1	10745	10745		10.074	1.4806	1	3076700	+		55884	22893	40656	40983	54597	54597					-0.09224922420980874
TTHLHNDLW	9	Unmodified	_TTHLHNDLW_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1;ENST00000491536.5_1_1:12024755-12035393:+|nuORF	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	A375_MHC_IP_R1	1	379.921142578125	3	379.520962	1135.54106	0.063598	2.4137E-05	-0.16496	-6.2606E-05	-0.10136	-3.8469E-05	379.5206194106178	41.178	0.65815	41.178	40.913	41.571	0					22	12	3	0	0	0	0.22528	1	14224	14224		27.223	17.073	1	2110000			55885	1777	40657	40984	54598	54598					-0.021292133306360483
TTHSVLPA	8	Unmodified	_TTHSVLPA_					0	0	0		ENSG00000166924|ENST00000300179|NYAP1;nc|ENSG00000166924|Q6ZVC0-2|NYAP1	ENSG00000166924|ENST00000300179|NYAP1	ENSG00000166924|ENST00000300179|NYAP1	MSMS	A375_MHC_IP_R1	1	413.62554931640625	2	413.226885	824.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.851	1	29.851	29.351	30.351	0								0	0	0	0.16876	1	9410	9410		13.508	0	1				55886	7133	40658	40985	54599	54599					0.019975403176090367
TTIDQQLTV	9	Unmodified	_TTIDQQLTV_					0	0	0			REV__ENSG00000108592|ENST00000427159|FTSJ3	REV__ENSG00000108592|ENST00000427159|FTSJ3	MULTI-SECPEP	A375_MHC_IP_R1	1	510.4513854980469	2	509.774396	1017.53424	-0.39524	-0.00020148	-3.2374	-0.0016503	-3.6326	-0.0018518	510.27364223256006	57.237	0.25589	57.237	57.159	57.415	0					5	4	2	0	0	0	0.69504	1	20590	20590		18.135	2.2878	1	505030	+		55887	17544	40659	40986	54600	54600					0.02617428998144078
TTIGGRSLY	9	Unmodified	_TTIGGRSLY_					0	0	0		ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;ERBB3|p.A805Gfs*22|1|0.26|ENSG00000065361|chr12:56097177-56097178|-/G|frameshift_variant	ENSG00000065361|ENST00000267101|ERBB3	ENSG00000065361|ENST00000267101|ERBB3	MULTI-MSMS	A375_MHC_IP_R1	1	484.6632385253906	2	484.263999	966.513445	-0.37624	-0.0001822	-0.66932	-0.00032413	-1.0456	-0.00050633	484.2634584567833	40.878	0.7578	40.878	40.559	41.317	0					30	14	3	0	0	0	0.084766	1	14072	14072		53.404	7.3831	1	5294400			55888	1379	40660	40987	54601	54601					0.02884883409149097
TTIHQIVRQW	10	Unmodified	_TTIHQIVRQW_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000478082.5_1_7:100856177-100861250:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	A375_MHC_IP_R1	1	641.75634765625	2	641.356754	1280.69895	-0.54599	-0.00035018	0.16876	0.00010824	-0.37723	-0.00024194	641.3567711572414	50.167	0.56266	50.167	49.896	50.459	0					20	10	3	0	0	0	0.1863	1	17802	17802		49.742	35.337	1	2603100			55889	2688	40661	40988	54602	54602					0.06983285928617988
TTIHQIVRQW	10	Unmodified	_TTIHQIVRQW_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000478082.5_1_7:100856177-100861250:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-SECPEP	A375_MHC_IP_R1	1	428.3070373535156	3	427.906928	1280.69895	-0.10268	-4.3938E-05	0.13114	5.6116E-05	0.028461	1.2179E-05	427.90694704479586	50.178	0.6136	50.178	49.947	50.561	0					28	11	3	0	0	0	0.31583	1	17750	17750		39.213	29.449	1	13545000			55890	2688	40661	40988	54603	54603					0.06983285928617988
TTIHQIVRQW	10	Unmodified	_TTIHQIVRQW_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000478082.5_1_7:100856177-100861250:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	A375_MHC_IP_R2	2	428.30694580078125	3	427.906928	1280.69895	-0.44599	-0.00019084	0.049817	2.1317E-05	-0.39618	-0.00016953	427.906916897647	49.313	0.86156	50.071	49.792	50.653	0.75737					37	16	4	0	0	0	0.01042	1	18497	18497		92.201	75.926	1	13386000			55891	2688	40661	40988	54604	54604					0.06983285928617988
TTIHQIVRQW	10	Unmodified	_TTIHQIVRQW_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000478082.5_1_7:100856177-100861250:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	A375_MHC_IP_R2	2	641.7562866210938	2	641.356754	1280.69895	-0.98263	-0.00063022	0.36082	0.00023141	-0.62181	-0.0003988	641.3569626262915	49.313	0.50534	50.071	49.792	50.297	0.75737					15	9	2	0	0	0	0.12874	1	18539	18539		64.927	49.678	1	3689200			55892	2688	40661	40988	54605	54605					0.06983285928617988
TTILEEIIGF	10	Unmodified	_TTILEEIIGF_					0	0	0			REV__ENST00000455134.1_1_10:93426952-93427153:-|nuORF	REV__ENST00000455134.1_1_10:93426952-93427153:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	378.584228515625	3	379.213024	1134.61724	0.038364	1.4548E-05	-2.9352	-0.0011131	-2.8968	-0.0010985	379.54638361264807	29.072	0.15293	29.072	28.945	29.098	0					4	2	2	0	0	0	0.91556	1	9040	9040		5.7834	0	1	950660	+		55893	24926	40662	40989	54606	54606					0.05531745726148074
TTIPTKQTQTF	11	Unmodified	_TTIPTKQTQTF_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000425843.1_1_X:120337248-120337797:-|nuORF;ENST00000552265.2_1_12:111822376-111823062:+|nuORF;ENST00000397642.3_1_1:247394123-247394771:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	A375_MHC_IP_R1	1	633.7401123046875	2	633.340435	1264.66632	-0.74516	-0.00047194	0.55384	0.00035077	-0.19133	-0.00012118	633.3407434889599	37.833	0.56225	37.833	37.556	38.118	0					32	10	4	0	0	0	0.00033631	2	12746	12746;12888		118.21	54.982	1	15621000			55894	2906	40663	40990	54607;54608	54607					0.044570340150812626
TTIPTKQTQTF	11	Unmodified	_TTIPTKQTQTF_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000425843.1_1_X:120337248-120337797:-|nuORF;ENST00000552265.2_1_12:111822376-111823062:+|nuORF;ENST00000397642.3_1_1:247394123-247394771:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MATCH	A375_MHC_IP_R2	2		2	633.340435	1264.66632	-1.4451	-0.00091522	0.79571	0.00050395	-0.64935	-0.00041126	633.3409838907316	37.029	0.6591	37.8	37.564	38.223	0.7709	-0.016673	0.00010582	NaN	118.21	27	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13974000			55895	2906	40663	40990							0.044570340150812626
TTIVLGRRF	9	Unmodified	_TTIVLGRRF_					0	0	0		nc|ENSG00000121775|Q9GZU3-2|TMEM39B;nc|ENSG00000121775|Q9GZU3-3|TMEM39B;ENST00000476968.5_1_1:32540652-32561345:+|nuORF;ENST00000468135.5_1_1:32542241-32568271:+|nuORF;ENSG00000121775|ENST00000336294|TMEM39B	nc|ENSG00000121775|Q9GZU3-2|TMEM39B	nc|ENSG00000121775|Q9GZU3-2|TMEM39B	MULTI-MSMS	A375_MHC_IP_R1	1	355.2852478027344	3	354.885464	1061.63456	-0.045884	-1.6284E-05	-0.34123	-0.0001211	-0.38711	-0.00013738	354.8852973539734	47.285	1.0179	47.285	46.952	47.97	0					28	19	3	0	0	0	0.52905	1	16631	16631		18.373	10.764	1	5240900			55896	3739	40664	40991	54609	54609					0.10621130842469029
TTIVLGRRF	9	Unmodified	_TTIVLGRRF_					0	0	0		nc|ENSG00000121775|Q9GZU3-2|TMEM39B;nc|ENSG00000121775|Q9GZU3-3|TMEM39B;ENST00000476968.5_1_1:32540652-32561345:+|nuORF;ENST00000468135.5_1_1:32542241-32568271:+|nuORF;ENSG00000121775|ENST00000336294|TMEM39B	nc|ENSG00000121775|Q9GZU3-2|TMEM39B	nc|ENSG00000121775|Q9GZU3-2|TMEM39B	MULTI-SECPEP	A375_MHC_IP_R2	2	532.2240600585938	2	531.824558	1061.63456	-0.55695	-0.0002962	-0.065901	-3.5048E-05	-0.62285	-0.00033125	531.8244268101291	46.367	0.4072	47.133	46.957	47.364	0.76519					17	7	3	0	0	0	0.3213	1	17370	17370		37.974	8.8924	1	4794100			55897	3739	40664	40991	54610	54610					0.10621130842469029
TTKAISRW	8	Unmodified	_TTKAISRW_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-SECPEP	A375_MHC_IP_R1	1	482.1748352050781	2	481.774534	961.534515	-0.16938	-8.1603E-05	0.77595	0.00037383	0.60657	0.00029223	481.7749491462183	35.564	0.40927	35.564	35.369	35.778	0					13	7	2	0	0	0	0.47399	1	11861	11861		57.722	17.765	1	2787600			55898	6668	40665	40992	54611	54611					0.05220893508658264
TTKAISRW	8	Unmodified	_TTKAISRW_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-SECPEP	A375_MHC_IP_R2	2	482.1744079589844	2	481.774534	961.534515	-0.76346	-0.00036782	0.58469	0.00028169	-0.17877	-8.6127E-05	481.77487384882085	34.67	0.40443	35.433	35.222	35.627	0.76338					12	7	2	0	0	0	0.68831	1	12532	12532		41.84	16.44	1	3746700			55899	6668	40665	40992	54612	54612					0.05220893508658264
TTKGFDIMW	9	Unmodified	_TTKGFDIMW_					0	0	0			REV__ITPKB|p.P903S|1|0.36|ENSG00000143772|chr1:226634805-226634805|G/A|missense_variant	REV__ITPKB|p.P903S|1|0.36|ENSG00000143772|chr1:226634805-226634805|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	549.6773071289062	2	549.76806	1097.52157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.689	1	43.689	43.189	44.189	0								0	0	0	0.15486	1	15203	15203		10.074	0.72649	1		+		55900	19385	40666	40993	54613	54613					-0.02329305665762149
TTKGVRRR	8	Unmodified	_TTKGVRRR_					0	0	0			REV__tr|U7SZ74|U7SZ74_FUSNUATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00870PE=4SV=1	REV__tr|U7SZ74|U7SZ74_FUSNUATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00870PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	487.9555969238281	2	487.304324	972.594095	-0.39874	-0.00019431	0.39703	0.00019348	-0.0017125	-8.345E-07	487.3042573678078	141.53	0.61314	141.57	141.32	141.94	0.04216					13	11	2	0	0	0	0.77797	1	55360	55360		2.3027	0	1	738800	+		55901	28640	40667	40994	54614	54614					0.10670209242698547
TTKGVRRR	8	Unmodified	_TTKGVRRR_					0	0	0			REV__tr|U7SZ74|U7SZ74_FUSNUATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00870PE=4SV=1	REV__tr|U7SZ74|U7SZ74_FUSNUATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00870PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	487.304324	972.594095	-0.39874	-0.00019431	0.39703	0.00019348	-0.0017125	-8.345E-07	487.3042573678078	141.53	0.61314	141.57	141.32	141.94	0.04216	0.043743	-0.000381	NaN	2.3027	13	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	738800	+		55902	28640	40667	40994							0.10670209242698547
TTKKDLKDYF	10	Unmodified	_TTKKDLKDYF_					0	0	0		nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	MULTI-MSMS	A375_MHC_IP_R1	1	420.6275634765625	3	420.227444	1257.6605	0.22929	9.6352E-05	-0.11099	-4.6643E-05	0.11829	4.9709E-05	420.22734390506133	35.385	0.81633	35.385	35.013	35.83	0					46	15	4	0	0	0	0.063124	1	11708	11708		72.187	35.792	1	27266000			55903	5019	40668	40995	54615	54615					0.041979355034072796
TTKKDLKDYF	10	Unmodified	_TTKKDLKDYF_					0	0	0		nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	MULTI-SECPEP	A375_MHC_IP_R1	1	630.2374267578125	2	629.837528	1257.6605	-0.46944	-0.00029567	0.12776	8.0468E-05	-0.34168	-0.0002152	629.8375513255062	35.344	0.40639	35.344	35.167	35.573	0					12	7	2	0	0	0	0.11152	1	11782	11782		88.576	52.449	1	2924600			55904	5019	40668	40995	54616	54616					0.041979355034072796
TTKKDLKDYF	10	Unmodified	_TTKKDLKDYF_					0	0	0		nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	MULTI-MSMS	A375_MHC_IP_R2	2	420.62725830078125	3	420.227444	1257.6605	-0.31268	-0.0001314	-0.051755	-2.1749E-05	-0.36444	-0.00015315	420.22740041149547	34.476	0.86295	35.229	34.904	35.767	0.75225					48	16	4	0	0	0	0.036124	1	12410	12410		79.86	35.468	1	30277000			55905	5019	40668	40995	54617	54617					0.041979355034072796
TTKKDLKDYF	10	Unmodified	_TTKKDLKDYF_					0	0	0		nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	MULTI-MATCH	A375_MHC_IP_R2	2		2	629.837528	1257.6605	-1.0406	-0.0006554	0.0049502	3.1178E-06	-1.0356	-0.00065229	629.8373612662842	34.457	0.50949	35.209	34.955	35.464	0.75225	-0.067092	-5.154E-05	NaN	88.576	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1902500			55906	5019	40668	40995							0.041979355034072796
TTKKIVLRL	9	Unmodified	_TTKKIVLRL_					0	0	0		ENSG00000165502|ENST00000298289|RPL36AL;ENSG00000241343|ENST00000553110|RPL36A;ENST00000399253.3_1_X:140233088-140233355:+|nuORF	ENSG00000165502|ENST00000298289|RPL36AL	ENSG00000165502|ENST00000298289|RPL36AL	MULTI-MSMS	A375_MHC_IP_R1	1	358.3128356933594	3	357.913131	1070.71756	-0.1856	-6.6429E-05	-0.22267	-7.9696E-05	-0.40827	-0.00014612	357.9129334798119	32.71	0.50359	32.71	32.383	32.887	0					19	9	3	0	0	0	0.18338	1	10604	10604		39.213	23.474	1	3915000			55907	6960	40669	40996	54618	54618					0.18503447570446951
TTKKIVLRL	9	Unmodified	_TTKKIVLRL_					0	0	0		ENSG00000165502|ENST00000298289|RPL36AL;ENSG00000241343|ENST00000553110|RPL36A;ENST00000399253.3_1_X:140233088-140233355:+|nuORF	ENSG00000165502|ENST00000298289|RPL36AL	ENSG00000165502|ENST00000298289|RPL36AL	MULTI-MATCH	A375_MHC_IP_R2	2		3	357.913131	1070.71756	-0.22665	-8.1122E-05	-0.091755	-3.284E-05	-0.31841	-0.00011396	357.9130947098394	31.682	0.35512	32.419	32.249	32.605	0.73691	-0.14545	6.9573E-05	NaN	39.213	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1422500			55908	6960	40669	40996							0.18503447570446951
TTKKKKKKKK	10	Unmodified	_TTKKKKKKKK_					0	0	0		ENSG00000130826|ENST00000369550|DKC1	ENSG00000130826|ENST00000369550|DKC1	ENSG00000130826|ENST00000369550|DKC1	MSMS	A375_MHC_IP_R1	1	623.4946899414062	2	623.440089	1244.86563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.727	1	90.727	90.227	91.227	0								0	0	0	0.15629	1	33343	33343		0.40072	0.40072	1				55909	4287	40670	40997	54619	54619					0.2529875882428314
TTKPAIIF	8	Unmodified	_TTKPAIIF_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;HCFC1|p.A1984V|1|0.95|ENSG00000172534|chrX:153950296-153950296|G/A|missense_variant	nc|ENSG00000172534|P51610-2|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	MULTI-SECPEP	A375_MHC_IP_R1	1	446.1707763671875	2	445.770929	889.527304	-0.20332	-9.0632E-05	0.69223	0.00030857	0.48891	0.00021794	445.77105545396216	65.914	1.069	65.914	65.206	66.275	0					37	20	2	0	0	0	0.64713	1	23848	23848		36.127	10.728	1	4926700			55910	7719	40671	40998	54620	54620					0.0781216090823591
TTKPAIIF	8	Unmodified	_TTKPAIIF_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;HCFC1|p.A1984V|1|0.95|ENSG00000172534|chrX:153950296-153950296|G/A|missense_variant	nc|ENSG00000172534|P51610-2|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	MULTI-SECPEP	A375_MHC_IP_R2	2	446.170654296875	2	445.770929	889.527304	-0.38285	-0.00017066	0.16054	7.1563E-05	-0.22231	-9.9099E-05	445.7708937346668	64.863	1.1182	65.601	65.002	66.121	0.73812					40	21	3	0	0	0	0.81376	1	24561	24561		32.305	0	1	4599400			55911	7719	40671	40998	54621	54621					0.0781216090823591
TTKRPNTFF	9	Unmodified	_TTKRPNTFF_					0	0	0		ENST00000430258.2_1_X:110867440-110867509:-|nuORF;ENSG00000105640|ENST00000222247|RPL18A;ENST00000413663.1_1_3:43526466-43526670:-|nuORF	ENST00000430258.2_1_X:110867440-110867509:-|nuORF	ENST00000430258.2_1_X:110867440-110867509:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	556.6980590820312	2	556.298373	1110.58219	-0.48951	-0.00027231	0.11647	6.479E-05	-0.37304	-0.00020752	556.2983997795802	33.739	0.55555	33.739	33.496	34.052	0					26	10	3	0	0	0	0.10495	1	11023	11023		65.474	11.641	1	20661000			55912	2619	40672	40999	54622	54622					0.03132547708855782
TTKRPNTFF	9	Unmodified	_TTKRPNTFF_					0	0	0		ENST00000430258.2_1_X:110867440-110867509:-|nuORF;ENSG00000105640|ENST00000222247|RPL18A;ENST00000413663.1_1_3:43526466-43526670:-|nuORF	ENST00000430258.2_1_X:110867440-110867509:-|nuORF	ENST00000430258.2_1_X:110867440-110867509:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	556.6982421875	2	556.298373	1110.58219	-0.84591	-0.00047058	0.18297	0.00010178	-0.66295	-0.0003688	556.2984579096938	32.852	0.66106	33.589	33.265	33.926	0.73691					28	12	3	0	0	0	0.068187	1	11713	11713		69.338	23.639	1	19263000			55913	2619	40672	40999	54623	54623					0.03132547708855782
TTKRPNTFF	9	Unmodified	_TTKRPNTFF_					0	0	0		ENST00000430258.2_1_X:110867440-110867509:-|nuORF;ENSG00000105640|ENST00000222247|RPL18A;ENST00000413663.1_1_3:43526466-43526670:-|nuORF	ENST00000430258.2_1_X:110867440-110867509:-|nuORF	ENST00000430258.2_1_X:110867440-110867509:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	371.93572998046875	3	371.201341	1110.58219	0.33131	0.00012298	-0.3211	-0.00011919	0.010218	3.793E-06	371.20121768288845	32.894	0.71245	33.631	33.367	34.079	0.73692					25	13	3	0	0	0	0.53748	1	11721	11721		28.495	12.345	1	13314000			55914	2619	40672	40999	54624	54624					0.03132547708855782
TTLASRLLDT	10	Unmodified	_TTLASRLLDT_					0	0	0			REV__nc|ENSG00000129493|Q86XA9|HEATR5A	REV__nc|ENSG00000129493|Q86XA9|HEATR5A	MULTI-SECPEP	A375_MHC_IP_R1	1	546.208740234375	2	545.808771	1089.60299	-0.8939	-0.0004879	0.57698	0.00031492	-0.31692	-0.00017297	545.809270834089	143.37	0.15074	143.37	143.29	143.45	0					4	2	2	0	0	0	0.92957	1	55022	55022		6.2058	0	1	1020000	+		55915	18494	40673	41000	54625	54625					0.06177093297856118
TTLEHQKTF	9	Unmodified	_TTLEHQKTF_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32689659-32696621:+|nuORF	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-MSMS	A375_MHC_IP_R1	1	552.68798828125	2	552.787838	1103.56112	-0.29598	-0.00016361	-0.30913	-0.00017088	-0.60511	-0.0003345	552.7876663753999	21.479	0.91398	21.479	21.048	21.962	0					30	17	2	0	0	0	0.57177	1	5569	5569		16.566	7.8205	1	94095000			55916	1797	40674	41001	54626	54626					0.013485376093285595
TTLEHQKTF	9	Unmodified	_TTLEHQKTF_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32689659-32696621:+|nuORF	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-MSMS	A375_MHC_IP_R1	1	369.5746154785156	3	368.860984	1103.56112	0.53757	0.00019829	-0.20373	-7.5149E-05	0.33384	0.00012314	368.86088943520366	21.479	1.73	21.479	20.587	22.317	0					83	33	5	0	0	0	0.23226	1	5600	5600		35.612	17.239	1	107320000			55917	1797	40674	41001	54627	54627					0.013485376093285595
TTLEHQKTF	9	Unmodified	_TTLEHQKTF_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32689659-32696621:+|nuORF	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-MSMS	A375_MHC_IP_R2	2	369.2609558105469	3	368.860984	1103.56112	-0.05927	-2.1862E-05	0.12774	4.7118E-05	0.06847	2.5256E-05	368.8609884074525	19.86	1.37	20.47	19.892	21.262	0.6103					85	26	5	0	0	0	0.1915	1	6068	6068		38.615	14.825	1	46224000			55918	1797	40674	41001	54628	54628					0.013485376093285595
TTLEHQKTF	9	Unmodified	_TTLEHQKTF_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32689659-32696621:+|nuORF	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-MSMS	A375_MHC_IP_R2	2	553.1875	2	552.787838	1103.56112	-1.0886	-0.00060177	0.14196	7.8473E-05	-0.94666	-0.0005233	552.7878937778711	19.87	1.1157	20.481	20.044	21.16	0.61029					57	21	4	0	0	0	0.0030971	2	6076	6076;6301		226.55	167.87	1	35521000			55919	1797	40674	41001	54629;54630	54629					0.013485376093285595
TTLEHQKTF	9	Unmodified	_TTLEHQKTF_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32689659-32696621:+|nuORF	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-SECPEP	A375_MHC_IP_R2	2	553.187255859375	2	552.787838	1103.56112	-1.1274	-0.0006232	1.3964	0.00077191	0.26901	0.0001487	552.7879720508303	22.823	0.51077	23.453	23.215	23.726	0.63014					23	9	4	0	0	0	0.0286	1	7271	7271		110.55	92.406	1	5346800			55920	1797	40674	41001	54631	54631					0.013485376093285595
TTLEQVRGW	9	Unmodified	_TTLEQVRGW_					0	0	0		nc|ENSG00000006118|Q24JP5-4|TMEM132A;ENSG00000006118|ENST00000453848|TMEM132A;nc|ENSG00000006118|Q24JP5-2|TMEM132A	nc|ENSG00000006118|Q24JP5-4|TMEM132A	nc|ENSG00000006118|Q24JP5-4|TMEM132A	MULTI-SECPEP	A375_MHC_IP_R2	2	545.15380859375	2	545.288005	1088.56146	-1.2196	-0.00066506	1.9352	0.0010552	0.71552	0.00039016	545.2896018956819	56.987	0.56154	57.737	57.459	58.02	0.75015					21	10	3	0	0	0	0.46045	1	21516	21516		17.113	7.039	1	1681500			55921	908	40675	41002	54632	54632					0.020719573291898996
TTLEQVRGW	9	Unmodified	_TTLEQVRGW_					0	0	0		nc|ENSG00000006118|Q24JP5-4|TMEM132A;ENSG00000006118|ENST00000453848|TMEM132A;nc|ENSG00000006118|Q24JP5-2|TMEM132A	nc|ENSG00000006118|Q24JP5-4|TMEM132A	nc|ENSG00000006118|Q24JP5-4|TMEM132A	MULTI-MATCH	A375_MHC_IP_R1	1		2	545.288005	1088.56146	-0.5573	-0.00030389	2.0705	0.001129	1.5132	0.00082511	545.2892922285131	57.732	0.60834	57.732	57.518	58.126	0	-0.0022884	4.6633E-05	NaN	12.241	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1397400			55922	908	40675	41002							0.020719573291898996
TTLIPDMMKW	10	Unmodified	_TTLIPDMMKW_					0	0	0			REV__nc|ENSG00000112964|P10912-4|GHR	REV__nc|ENSG00000112964|P10912-4|GHR	MSMS	A375_MHC_IP_R1	1	412.5877990722656	3	412.54361	1234.609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.268	1	28.268	27.768	28.768	0								0	0	0	0.15158	1	8698	8698		8.9762	0.53194	1		+		55923	17761	40676	41003	54633	54633					0.0010815221351094806
TTLKHSNVW	9	Unmodified	_TTLKHSNVW_					0	0	0		ENSG00000047346|ENST00000619572|ATOSA;nc|ENSG00000047346|Q32MH5-3|ATOSA;nc|ENSG00000047346|Q32MH5-2|ATOSA	ENSG00000047346|ENST00000619572|ATOSA	ENSG00000047346|ENST00000619572|ATOSA	MULTI-SECPEP	A375_MHC_IP_R2	2	543.179443359375	2	543.290548	1084.56654	-1.1962	-0.0006499	1.1035	0.00059955	-0.092685	-5.0355E-05	543.2909521452452	26.585	0.30487	27.245	27.008	27.313	0.65992					9	5	2	0	0	0	0.59098	1	8953	8953		16.149	12.553	1	1029700			55924	1198	40677	41004	54634	54634					0.027642611918281546
TTLLAFNVP	9	Unmodified	_TTLLAFNVP_					0	0	0			REV__ENST00000496384.6_2_7:140425901-140426006:-|nuORF	REV__ENST00000496384.6_2_7:140425901-140426006:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	488.6844787597656	2	488.279118	974.543683	-0.7305	-0.00035669	-0.023354	-1.1403E-05	-0.75385	-0.00036809	488.27895595527093	71.168	0.45629	71.902	71.605	72.061	0.73421					13	8	2	0	0	0	0.35581	1	27038	27038		26.884	1.4843	1	2769800	+		55925	25459	40678	41005	54635	54635					0.055392420743373805
TTLLDGLYPGG	11	Unmodified	_TTLLDGLYPGG_					0	0	0		ENSG00000158683|ENST00000289672|PKD1L1;nc|ENSG00000158683|Q8TDX9-2|PKD1L1	ENSG00000158683|ENST00000289672|PKD1L1	ENSG00000158683|ENST00000289672|PKD1L1	MULTI-SECPEP	A375_MHC_IP_R1	1	553.1878662109375	2	553.790047	1105.56554	-0.30203	-0.00016726	0.91821	0.0005085	0.61618	0.00034124	553.7905264333365	21.479	0.81091	21.479	20.895	21.706	0					27	15	2	0	0	0	0.88538	1	5617	5617		24.021	2.2739	1	14706000			55926	6322	40679	41006	54636	54636					0.01698002032230761
TTLLHKCHKL	10	Unmodified	_TTLLHKCHKL_					0	0	0			REV__nc|ENSG00000280109|Q8WY50|PLAC4	REV__nc|ENSG00000280109|Q8WY50|PLAC4	MULTI-SECPEP	A375_MHC_IP_R1	1	597.4633178710938	2	597.3448	1192.67505	-0.39901	-0.00023835	-3.0535	-0.001824	-3.4525	-0.0020623	597.8446302830532	74.953	0.40638	74.953	74.805	75.211	0					11	7	2	0	0	0	0.94516	1	27392	27392		1.4819	0.28856	1	1282500	+		55927	27547	40680	41007	54637	54637					0.08641729170585677
TTLPLGRSW	9	Unmodified	_TTLPLGRSW_					0	0	0		ENST00000252512.13_1_8:21827660-21827708:+|nuORF	ENST00000252512.13_1_8:21827660-21827708:+|nuORF	ENST00000252512.13_1_8:21827660-21827708:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1875	2	515.787641	1029.56073	-0.36188	-0.00018665	-0.24137	-0.0001245	-0.60325	-0.00031115	515.7874688761362	71.44	0.96096	71.44	71.108	72.069	0					34	18	3	0	0	0	0.10535	1	25938	25938		75.571	39.444	1	42005000			55928	10210	40681	41008	54638	54638					0.047131626801501625
TTLPLGRSW	9	Unmodified	_TTLPLGRSW_					0	0	0		ENST00000252512.13_1_8:21827660-21827708:+|nuORF	ENST00000252512.13_1_8:21827660-21827708:+|nuORF	ENST00000252512.13_1_8:21827660-21827708:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	516.1871948242188	2	515.787641	1029.56073	-0.77226	-0.00039832	-0.010457	-5.3936E-06	-0.78272	-0.00040371	515.7875700715418	70.657	1.4172	71.391	71.048	72.465	0.73421					48	27	5	0	0	0	0.0092755	1	26744	26744		103.82	38.589	1	42454000			55929	10210	40681	41008	54639	54639					0.047131626801501625
TTLRGRSQEYD	11	Unmodified	_TTLRGRSQEYD_					0	0	0		SRRM4|p.S278L|1|0.64|ENSG00000139767|chr12:119145442-119145442|C/T|missense_variant	SRRM4|p.S278L|1|0.64|ENSG00000139767|chr12:119145442-119145442|C/T|missense_variant	SRRM4|p.S278L|1|0.64|ENSG00000139767|chr12:119145442-119145442|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	442.6530456542969	3	442.55299	1324.63714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.193	1	32.193	31.693	32.693	0								0	0	0	0.16182	1	10380	10380		9.2438	3.0094	1				55930	29249	40682	41009	54640	54640					-0.012191102811812016
TTLRQCEVL	9	Unmodified	_TTLRQCEVL_					0	0	0		ENST00000496704.1_1_2:130897130-130898075:-|nuORF;ENSG00000163040|ENST00000409856|CCDC74A;ENSG00000152076|ENST00000409943|CCDC74B;nc|ENSG00000163040|Q96AQ1|CCDC74A;nc|ENSG00000152076|Q96LY2|CCDC74B	ENST00000496704.1_1_2:130897130-130898075:-|nuORF	ENST00000496704.1_1_2:130897130-130898075:-|nuORF	MSMS	A375_MHC_IP_R2	2	531.7392578125	2	531.784241	1061.55393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.168	1	74.906	74.406	75.406	0.73752								0	0	0	0.1521	1	28151	28151		18.135	2.2878	1				55931	5942	40683	41010	54641	54641					0.025614817372570542
TTLRQLGR	8	Unmodified	_TTLRQLGR_					0	0	0			REV__ENST00000522483.2_1_19:36526344-36545129:-|nuORF	REV__ENST00000522483.2_1_19:36526344-36545129:-|nuORF	MSMS	A375_MHC_IP_R1	1	472.6945495605469	2	472.785433	943.556313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.079	1	70.079	69.579	70.579	0								0	0	0	0.16876	1	25439	25439		25.399	0	1		+		55932	20205	40684	41011	54642	54642					0.08227698257235261
TTLRRSVSW	9	Unmodified	_TTLRRSVSW_					0	0	0		ENST00000307102.9_1_15:66727477-66729087:+|nuORF	ENST00000307102.9_1_15:66727477-66729087:+|nuORF	ENST00000307102.9_1_15:66727477-66729087:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	368.9367370605469	3	369.208607	1104.60399	0.25822	9.5338E-05	-0.19236	-7.1022E-05	0.06586	2.4316E-05	369.2084252206417	32.043	0.30399	32.78	32.605	32.909	0.73692					7	5	2	0	0	0	0.49205	1	11379	11379		20.581	7.7083	1	1318200			55933	10585	40685	41012	54643	54643					0.055873524574280964
TTLRRSVSW	9	Unmodified	_TTLRRSVSW_					0	0	0		ENST00000307102.9_1_15:66727477-66729087:+|nuORF	ENST00000307102.9_1_15:66727477-66729087:+|nuORF	ENST00000307102.9_1_15:66727477-66729087:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	369.208607	1104.60399	0.10699	3.9501E-05	-0.13258	-4.8948E-05	-0.025588	-9.4473E-06	369.20879131808954	32.926	0.5051	32.926	32.634	33.14	0	0.07268	5.2028E-05	NaN	20.581	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1481800			55934	10585	40685	41012							0.055873524574280964
TTLTALVRYY	10	Unmodified	_TTLTALVRYY_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|457|18.28|0.76|4.59|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MSMS	A375_MHC_IP_R2	2	600.7319946289062	2	600.834788	1199.65502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.59	1	126.87	126.37	127.37	0.2814								0	0	0	0.15308	1	49536	49536		10.824	0	1				55935	440	40686	41013	54644	54644					0.06318256711642789
TTLTYVKV	8	Unmodified	_TTLTYVKV_					0	0	0		ENST00000462230.5_1_3:44409048-44409219:+|nuORF	ENST00000462230.5_1_3:44409048-44409219:+|nuORF	ENST00000462230.5_1_3:44409048-44409219:+|nuORF	MSMS	A375_MHC_IP_R2	2	462.681640625	2	462.773668	923.532783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.713	1	93.452	92.952	93.952	0.73902								0	0	0	0.16876	1	35255	35255		34.102	9.4286	1				55936	12199	40687	41014	54645	54645					0.0679583970005524
TTLVDNNTW	9	Unmodified	_TTLVDNNTW_					0	0	0		ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	MULTI-MSMS	A375_MHC_IP_R1	1	532.6563720703125	2	532.256371	1062.49819	-0.62517	-0.00033275	-0.38942	-0.00020727	-1.0146	-0.00054002	532.2562223414731	74.817	0.9122	74.817	74.4	75.312	0					41	17	4	0	0	0	0.021889	1	27199	27199		81.89	50.622	1	6236400			55937	6678	40688	41015	54646	54646					-0.030560281787074928
TTLVDNNTW	9	Unmodified	_TTLVDNNTW_					0	0	0		ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	MULTI-MSMS	A375_MHC_IP_R2	2	532.6561279296875	2	532.256371	1062.49819	-0.70581	-0.00037567	-0.20735	-0.00011036	-0.91316	-0.00048603	532.256342116427	74.167	1.1714	74.905	74.398	75.57	0.73752					45	22	4	0	0	0	0.012968	1	28093	28093		92.491	54.517	1	6042500			55938	6678	40688	41015	54647	54647					-0.030560281787074928
TTLVLSKRTP	10	Unmodified	_TTLVLSKRTP_					0	0	0		ENSG00000154175|ENST00000471714|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	MULTI-SECPEP	A375_MHC_IP_R2	2	372.2771911621094	3	372.564279	1114.67101	0.20154	7.5086E-05	0.222	8.2711E-05	0.42354	0.0001578	372.8986336031284	35.343	0.20255	36.107	35.98	36.183	0.76338					5	3	2	0	0	0	0.94587	1	12797	12797		0.69767	0.1345	1	705730			55939	6068	40689	41016	54648	54648					0.11825962948501001
TTLVMFSSLL	10	Unmodified	_TTLVMFSSLL_					0	0	0		ENST00000407073.5_2_2:148990944-149215877:+|nuORF	ENST00000407073.5_2_2:148990944-149215877:+|nuORF	ENST00000407073.5_2_2:148990944-149215877:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	556.7071533203125	2	556.307018	1110.59948	-0.83622	-0.00046519	1.209	0.00067258	0.3728	0.00020739	556.3074615512845	128.68	0.55905	128.92	128.55	129.11	0.23946					16	10	2	0	0	0	0.70496	1	50552	50552		10.074	0	1	4418100			55940	11608	40690	41017	54649	54649					0.04860707199645731
TTLVMFSSLL	10	Unmodified	_TTLVMFSSLL_					0	0	0		ENST00000407073.5_2_2:148990944-149215877:+|nuORF	ENST00000407073.5_2_2:148990944-149215877:+|nuORF	ENST00000407073.5_2_2:148990944-149215877:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	556.307018	1110.59948	-0.57083	-0.00031756	1.454	0.00080888	0.88319	0.00049132	556.3077196738581	128.83	0.35779	128.83	128.68	129.04	0	-0.046114	0.00012324	NaN	10.074	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2255600			55941	11608	40690	41017							0.04860707199645731
TTMEPHPFRQ	10	Unmodified	_TTMEPHPFRQ_					0	0	0			REV__MUC16|p.G7656R|1|0.19|ENSG00000181143|chr19:8953804-8953804|C/T|missense_variant	REV__MUC16|p.G7656R|1|0.19|ENSG00000181143|chr19:8953804-8953804|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	414.9326171875	3	415.201124	1242.58154	0.5814	0.0002414	-1.8406	-0.00076421	-1.2592	-0.00052282	415.2008705770354	21.602	0.25251	21.602	21.454	21.706	0					6	4	2	0	0	0	0.92199	1	5697	5697		7.4771	3.8844	1	1326700	+		55942	27049	40691	41018	54650	54650					-0.03004615002510036
TTNDLRFIWQ	10	Unmodified	_TTNDLRFIWQ_					0	0	0		GLRB|p.D209N|1|0.26|ENSG00000109738|chr4:157138823-157138823|G/A|missense_variant	GLRB|p.D209N|1|0.26|ENSG00000109738|chr4:157138823-157138823|G/A|missense_variant	GLRB|p.D209N|1|0.26|ENSG00000109738|chr4:157138823-157138823|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	431.945556640625	3	431.891055	1292.65134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.791	1	49.549	49.049	50.049	0.75737								0	0	0	0.15539	1	18324	18324		3.3196	0	1				55943	14052	40692	41019	54651	54651					0.01671586937777647
TTNDPVKSET	10	Unmodified	_TTNDPVKSET_					0	0	0			REV__ENSG00000173517|ENST00000682557|PEAK1	REV__ENSG00000173517|ENST00000682557|PEAK1	MULTI-SECPEP	A375_MHC_IP_R2	2	364.2549743652344	3	364.512021	1090.51423	-0.017206	-6.272E-06	-1.8562	-0.00067662	-1.8734	-0.00068289	364.51131985728915	27.174	0.40817	27.852	27.69	28.098	0.67857					11	7	2	0	0	0	0.8866	1	9359	9359		17.049	8.0723	1	1979600	+		55944	21227	40693	41020	54652	54652					-0.027403667324506387
TTNYSSHRKPD	11	Unmodified	_TTNYSSHRKPD_					0	0	0		ENSG00000185313|ENST00000449082|SCN10A	ENSG00000185313|ENST00000449082|SCN10A	ENSG00000185313|ENST00000449082|SCN10A	MULTI-SECPEP	A375_MHC_IP_R1	1	436.27862548828125	3	435.877586	1304.61093	-0.0051464	-2.2432E-06	-0.28092	-0.00012245	-0.28606	-0.00012469	436.21121326006886	20.67	0.81429	20.67	20.384	21.199	0					28	15	3	0	0	0	0.99732	1	5351	5351		1.0136	0	1	1601400			55945	8658	40694	41021	54653	54653					-0.029193794526690908
TTPHVHKMI	9	Unmodified	_TTPHVHKMI_					0	0	0			REV__ENSG00000133030|ENST00000651222|MPRIP	REV__ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	A375_MHC_IP_R2	2	355.2610168457031	3	355.195421	1062.56443	-0.21043	-7.4743E-05	0.16594	5.894E-05	-0.044491	-1.5803E-05	355.19552593320896	45.699	0.60336	46.464	46.252	46.855	0.76519					16	11	2	0	0	0	0.6898	1	17079	17079		4.897	0	1	4449600	+		55946	18701	40695	41022	54654	54654					0.03565509182340065
TTPSTGPASPW	11	Unmodified	_TTPSTGPASPW_					0	0	0			REV__nc|ENSG00000171798|Q76NI1-4|KNDC1	REV__nc|ENSG00000171798|Q76NI1-4|KNDC1	MULTI-MSMS	A375_MHC_IP_R1	1	551.6874389648438	2	551.264196	1100.51384	-0.55992	-0.00030867	-0.11182	-6.1643E-05	-0.67175	-0.00037031	551.2642141438632	53.449	0.50774	53.449	53.148	53.656	0					15	9	2	0	0	0	0.72119	1	19131	19131		13.906	4.5229	1	1977500	+		55947	27359	40696	41023	54655	54655					-0.03239741661673179
TTQCNACC	8	Unmodified	_TTQCNACC_					0	0	0			REV__ENST00000489987.1_1_3:128199864-128200883:-|nuORF	REV__ENST00000489987.1_1_3:128199864-128200883:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	843.0751342773438	1	843.27937	842.272094	-0.037986	-3.2032E-05	-1.9656	-0.0016575	-2.0036	-0.0016896	843.2799356318052	116.62	0.50978	116.62	116.19	116.7	0					14	9	2	0	0	0	0.972	1	42657	42657		4.756	0	1	5034000	+		55948	21556	40697	41024	54656	54656					-0.1553513488546514
TTQKWIPFY	9	Unmodified	_TTQKWIPFY_					0	0	0		ENST00000486486.1_1_3:44772979-44773213:+|nuORF	ENST00000486486.1_1_3:44772979-44773213:+|nuORF	ENST00000486486.1_1_3:44772979-44773213:+|nuORF	MSMS	A375_MHC_IP_R1	1	592.2291259765625	2	592.310949	1182.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.871	1	71.871	71.371	72.371	0								0	0	0	0.12568	1	26131	26131		34.102	5.0209	1				55949	12583	40698	41025	54657	54657					0.023346025114051372
TTQLKLEQTI	10	Unmodified	_TTQLKLEQTI_					0	0	0		ENSG00000167077|ENST00000401548|MEI1;nc|ENSG00000167077|Q5TIA1-6|MEI1;nc|ENSG00000167077|Q5TIA1-4|MEI1	ENSG00000167077|ENST00000401548|MEI1	ENSG00000167077|ENST00000401548|MEI1	MULTI-SECPEP	A375_MHC_IP_R2	2	392.2802429199219	3	392.227444	1173.6605	-0.5614	-0.0002202	0.17622	6.9117E-05	-0.38519	-0.00015108	392.5618808418074	29.783	0.45555	30.482	30.385	30.84	0.69872					14	8	2	0	0	0	0.88038	1	10512	10512		21.799	7.5813	1	1281300			55950	7150	40699	41026	54658	54658					0.08061935503428685
TTQVHIWG	8	Unmodified	_TTQVHIWG_					0	0	0			REV__ENST00000325147.13_1_11:204217-204385:-|nuORF	REV__ENST00000325147.13_1_11:204217-204385:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	471.64556884765625	2	471.245609	940.476666	-0.45828	-0.00021596	0.42828	0.00020183	-0.029998	-1.4137E-05	471.2456462502236	47.232	0.51489	47.232	46.952	47.467	0					20	9	3	0	0	0	0.71318	1	16595	16595		30.637	3.7529	1	5745900	+		55951	23596	40700	41027	54659	54659					0.0040463158322836534
TTQVHIWG	8	Unmodified	_TTQVHIWG_					0	0	0			REV__ENST00000325147.13_1_11:204217-204385:-|nuORF	REV__ENST00000325147.13_1_11:204217-204385:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	471.6452331542969	2	471.245609	940.476666	-0.47814	-0.00022532	0.041798	1.9697E-05	-0.43634	-0.00020563	471.2455573215561	46.348	0.55931	47.113	46.805	47.364	0.76519					20	10	3	0	0	0	0.68964	1	17332	17332		37.974	1.847	1	5335300	+		55952	23596	40700	41027	54660	54660					0.0040463158322836534
TTQVHIWG	8	Unmodified	_TTQVHIWG_					0	0	0			REV__ENST00000325147.13_1_11:204217-204385:-|nuORF	REV__ENST00000325147.13_1_11:204217-204385:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	471.245609	940.476666	-0.45828	-0.00021596	0.42828	0.00020183	-0.029998	-1.4137E-05	471.2456462502236	47.232	0.51489	47.232	46.952	47.467	0	0.059479	0.00019676	NaN	37.974	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5745900	+		55953	23596	40700	41027							0.0040463158322836534
TTQWPFWV	8	Unmodified	_TTQWPFWV_					0	0	0			REV__ENST00000353383.5_2_17:17584885-17696414:+|nuORF	REV__ENST00000353383.5_2_17:17584885-17696414:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	532.2061157226562	2	532.763635	1063.51272	-0.91903	-0.00048962	1.1354	0.00060487	0.21633	0.00011525	532.7651130298576	50.155	0.5094	50.909	50.599	51.108	0.75406					13	9	2	0	0	0	0.8957	1	18913	18913		21.747	8.2388	1	817690	+		55954	23804	40701	41028	54661	54661					-0.016499112399060323
TTRAEALTE	9	Unmodified	_TTRAEALTE_					0	0	0		ENSG00000091317|ENST00000205636|CMTM6	ENSG00000091317|ENST00000205636|CMTM6	ENSG00000091317|ENST00000205636|CMTM6	MULTI-SECPEP	A375_MHC_IP_R1	1	495.6015930175781	2	496.256371	990.498189	-0.32145	-0.00015952	-1.301	-0.00064563	-1.6225	-0.00080515	496.25597904364395	50.157	0.7678	50.157	49.743	50.51	0					25	14	3	0	0	0	0.54812	1	17643	17643		24.991	0	1	2354500			55955	1976	40702	41029	54662	54662					0.0025597182127512497
TTRDYYFAL	9	Unmodified	_TTRDYYFAL_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENST00000530336.2_1_14:51390668-51411121:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-SECPEP	A375_MHC_IP_R1	1	575.682373046875	2	575.282389	1148.55022	-0.023557	-1.3552E-05	0.15637	8.9959E-05	0.13282	7.6407E-05	575.2823127566699	82.342	0.76141	82.342	82.011	82.772	0					26	14	2	0	0	0	0.41434	1	30075	30075		39.95	7.6442	1	16592000			55956	2187	40703	41030	54663	54663					-0.01810864764956932
TTREFGCSF	9	Unmodified	_TTREFGCSF_					0	0	0			REV__nc|ENSG00000189367|Q6ZU52-2|KIAA0408	REV__nc|ENSG00000189367|Q6ZU52-2|KIAA0408	MULTI-MSMS	A375_MHC_IP_R1	1	524.2916259765625	2	524.231842	1046.44913	-0.52229	-0.0002738	0.46258	0.0002425	-0.059713	-3.1303E-05	524.2320402464592	61.397	0.46023	61.397	61.176	61.636	0					13	8	2	0	0	0	0.64808	1	22218	22218		11.64	0.81637	1	2676300	+		55957	22151	40704	41031	54664	54664					-0.0722363973929987
TTRITTAL	8	Unmodified	_TTRITTAL_					0	0	0		ENST00000248948.3_1_22:24095052-24095358:-|nuORF	ENST00000248948.3_1_22:24095052-24095358:-|nuORF	ENST00000248948.3_1_22:24095052-24095358:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	439.161376953125	2	438.761092	875.507631	-0.12064	-5.2931E-05	0.82529	0.00036211	0.70465	0.00030917	438.76148670009445	139.86	0.25522	139.92	139.75	140.01	0.059906					8	4	3	0	0	0	0.972	1	54790	54790		0	0	1	1083400			55958	10195	40705	41032	54665	54665					0.06489784897462414
TTRLLRTVLL	10	Unmodified	_TTRLLRTVLL_					0	0	0		ENST00000517532.5_2_8:126104129-126114361:+|nuORF	ENST00000517532.5_2_8:126104129-126114361:+|nuORF	ENST00000517532.5_2_8:126104129-126114361:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	396.5935974121094	3	395.92744	1184.76049	-0.20509	-8.12E-05	0.25638	0.00010151	0.051295	2.0309E-05	395.92750155601794	19.384	0.69068	19.384	19.238	19.928	0					31	13	3	0	0	0	0.72321	1	4725	4725		1.9064	0.1641	1	8806300			55959	12960	40706	41033	54666	54666					0.17550217627899656
TTRLLRTVLL	10	Unmodified	_TTRLLRTVLL_					0	0	0		ENST00000517532.5_2_8:126104129-126114361:+|nuORF	ENST00000517532.5_2_8:126104129-126114361:+|nuORF	ENST00000517532.5_2_8:126104129-126114361:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	395.9767150878906	3	395.92744	1184.76049	-0.39271	-0.00015549	-0.05598	-2.2164E-05	-0.44869	-0.00017765	395.9273902658534	18.855	0.20984	19.458	19.423	19.633	0.60308					8	5	2	0	0	0	0.72321	1	5638	5638		1.9064	0.1641	1	32599000			55960	12960	40706	41033	54667	54667					0.17550217627899656
TTRQDQVEQF	10	Unmodified	_TTRQDQVEQF_					0	0	0		ENSG00000186603|ENST00000334815|HPDL	ENSG00000186603|ENST00000334815|HPDL	ENSG00000186603|ENST00000334815|HPDL	MULTI-SECPEP	A375_MHC_IP_R1	1	418.25091552734375	3	417.87032	1250.58913	0.31714	0.00013252	1.0256	0.00042856	1.3427	0.00056108	418.20498079699394	20.485	0.56167	20.485	20.334	20.895	0					13	10	2	0	0	0	0.91643	1	5223	5223		12.175	12.175	1	1340500			55961	8764	40707	41034	54668	54668					-0.02614184201252101
TTRQIPLF	8	Unmodified	_TTRQIPLF_					0	0	0		ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENST00000495368.1_1_10:12184516-12209761:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	488.6842346191406	2	488.284734	974.554916	-0.37444	-0.00018283	-0.089667	-4.3783E-05	-0.46411	-0.00022662	488.2846826203377	43.79	1.0609	44.559	44.228	45.289	0.76909					44	20	4	0	0	0	0.16799	1	16283	16283		74.423	3.2892	1	48709000			55962	12706	40708	41035	54669	54669					0.0666206416847217
TTRRRSRSR	9	Unmodified	_TTRRRSRSR_					0	0	0		ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	MULTI-MSMS	A375_MHC_IP_R2	2	392.9595031738281	3	392.565788	1174.67553	-0.46628	-0.00018305	-0.58311	-0.00022891	-1.0494	-0.00041196	392.56547253341677	23.626	0.40611	24.257	24.079	24.485	0.63014					13	7	2	0	0	0	0.73141	1	7546	7546		4.1895	0.86986	1	2769000			55963	7245	40709	41036	54670	54670					0.09518284934642907
TTRRRSRSR	9	Unmodified	_TTRRRSRSR_					0	0	0		ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	MULTI-MSMS	A375_MHC_IP_R2	2	392.5838928222656	3	392.565788	1174.67553	-0.45979	-0.0001805	1.1658	0.00045765	0.706	0.00027715	392.9008364531867	24.164	0.56114	24.808	24.499	25.06	0.64368					24	10	3	0	0	0	0.73141	1	7779	7779		4.1895	0.86986	1	4454400			55964	7245	40709	41036	54671	54671					0.09518284934642907
TTSDVPANY	9	Unmodified	_TTSDVPANY_					0	0	0		ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	MULTI-MSMS	A375_MHC_IP_R2	2	484.6216125488281	2	484.221997	966.429441	-0.54655	-0.00026465	-0.19241	-9.3167E-05	-0.73895	-0.00035782	484.2218231711588	41.974	0.51159	42.748	42.504	43.016	0.77451					14	9	2	0	0	0	0.27715	1	15621	15621		32.305	0	1	2752400			55965	1384	40710	41037	54672	54672					-0.05511692478432906
TTSHLMGMFY	10	Unmodified	_TTSHLMGMFY_					0	0	0		ENSG00000168496|ENST00000305885|FEN1	ENSG00000168496|ENST00000305885|FEN1	ENSG00000168496|ENST00000305885|FEN1	MULTI-MSMS	A375_MHC_IP_R1	1	594.6644897460938	2	594.264827	1186.5151	-0.40278	-0.00023936	0.16772	9.9668E-05	-0.23506	-0.00013969	594.2649959200702	87.583	0.66035	87.583	87.34	88	0					20	12	2	0	0	0	0.19329	1	32158	32158		49.933	25.259	1	2279800			55966	7311	40711	41038	54673	54673					-0.07069566888753798
TTSHLMGMFY	10	Unmodified	_TTSHLMGMFY_					0	0	0		ENSG00000168496|ENST00000305885|FEN1	ENSG00000168496|ENST00000305885|FEN1	ENSG00000168496|ENST00000305885|FEN1	MULTI-SECPEP	A375_MHC_IP_R2	2	594.6650390625	2	594.264827	1186.5151	-0.43385	-0.00025782	0.0011277	6.7015E-07	-0.43273	-0.00025715	594.2649852589412	86.769	0.76307	87.502	87.151	87.914	0.733					23	14	3	0	0	0	0.19481	1	32975	32975		49.933	25.912	1	2614800			55967	7311	40711	41038	54674	54674					-0.07069566888753798
TTSHLMGMFY	10	2 Oxidation (M)	_TTSHLM(Oxidation (M))GM(Oxidation (M))FY_		TTSHLM(1)GM(1)FY		TTSHLM(56)GM(56)FY	0	0	2		ENSG00000168496|ENST00000305885|FEN1	ENSG00000168496|ENST00000305885|FEN1	ENSG00000168496|ENST00000305885|FEN1	MULTI-MSMS	A375_MHC_IP_R2	2	610.6598510742188	2	610.259742	1218.50493	-0.28048	-0.00017117	0.057284	3.4958E-05	-0.2232	-0.00013621	610.259721661872	43.841	0.70618	44.61	44.177	44.883	0.7691					26	13	3	0	0	0	0.13478	1	16370	16370		56.177	40.33	1	3414000			55968	7311	40711	41039	54675	54675		373;374			-0.0955817461397146
TTSPLGNP	8	Unmodified	_TTSPLGNP_					0	0	0		nc|ENSG00000153071|P98082-2|DAB2;nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2	nc|ENSG00000153071|P98082-2|DAB2	nc|ENSG00000153071|P98082-2|DAB2	MULTI-SECPEP	A375_MHC_IP_R1	1	392.9886169433594	2	393.703243	785.391933	0.081441	3.2063E-05	0.44032	0.00017336	0.52176	0.00020542	393.70322643882923	57.351	0.30725	57.351	57.159	57.467	0					9	5	2	0	0	0	0.91495	1	20500	20500		4.3292	0	1	891920			55969	6004	40712	41040	54676	54676					-0.009347389533672867
TTSPQGHFVG	10	Unmodified	_TTSPQGHFVG_					0	0	0		ENSG00000169871|ENST00000306085|TRIM56	ENSG00000169871|ENST00000306085|TRIM56	ENSG00000169871|ENST00000306085|TRIM56	MULTI-MSMS	A375_MHC_IP_R2	2	516.151123046875	2	515.751256	1029.48796	-1.0872	-0.00056074	-0.03486	-1.7979E-05	-1.1221	-0.00057872	515.7512015319111	61.602	0.65427	62.347	61.919	62.573	0.74503					19	12	2	0	0	0	0.69833	1	23323	23323		13.042	0	1	4335700			55970	7445	40713	41041	54677	54677					-0.02560591113274313
TTSPVTRSVLP	11	Unmodified	_TTSPVTRSVLP_					0	0	0			REV__ENSG00000157741|ENST00000473989|UBN2	REV__ENSG00000157741|ENST00000473989|UBN2	MSMS	A375_MHC_IP_R1	1	386.60211181640625	3	386.555672	1156.64519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.307	1	47.307	46.807	47.807	0								0	0	0	0.16191	1	16636	16636		4.4062	0	1		+		55971	20040	40714	41042	54678	54678					0.07313068706253034
TTSRVLKVL	9	Unmodified	_TTSRVLKVL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;JUP|p.S339F|1|0.36|ENSG00000173801|chr17:41764961-41764961|G/A|missense_variant;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-SECPEP	A375_MHC_IP_R1	1	509.2264099121094	2	508.826766	1015.63898	-0.39947	-0.00020326	-0.093749	-4.7702E-05	-0.49321	-0.00025096	508.82668339055175	40.315	0.50924	40.315	40.05	40.559	0					23	9	3	0	0	0	0.30133	1	13818	13818		51.415	18.63	1	8220200			55972	7257;7830	40715	41043	54679	54679					0.13178595265389959
TTTFLKDPV	9	Unmodified	_TTTFLKDPV_					0	0	0		NPLOC4|p.P457L|1|0.08|ENSG00000182446|chr17:81569095-81569095|G/A|missense_variant	NPLOC4|p.P457L|1|0.08|ENSG00000182446|chr17:81569095-81569095|G/A|missense_variant	NPLOC4|p.P457L|1|0.08|ENSG00000182446|chr17:81569095-81569095|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	511.68133544921875	2	511.281857	1020.54916	-0.73236	-0.00037444	0.98658	0.00050442	0.25423	0.00012998	511.2818200328558	66.962	0.86907	66.962	66.58	67.449	0					34	16	3	0	0	0	0.28216	1	24279	24279		49.933	9.9757	1	1314100			55973	15023	40716	41044	54680	54680					0.03970920866152028
TTTGPRQPF	9	Unmodified	_TTTGPRQPF_					0	0	0		nc|ENSG00000099814|Q9Y4F5-3|CEP170B;ENSG00000099814|ENST00000414716|CEP170B;nc|ENSG00000099814|Q9Y4F5|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	MULTI-MSMS	A375_MHC_IP_R2	2	502.71807861328125	2	502.761623	1003.50869	-0.90718	-0.0004561	0.27068	0.00013609	-0.6365	-0.00032001	502.76327406577167	30.106	0.60951	30.824	30.454	31.064	0.71857					19	11	3	0	0	0	0.41409	1	10486	10486		24.021	2.2739	1	2176100			55974	2085	40717	41045	54681	54681					0.007079992663761914
TTTHHSTPNY	10	Unmodified	_TTTHHSTPNY_					0	0	0			REV__ING3|p.C376Wfs*2|1|0.21|ENSG00000071243|chr7:120973229-120973230|-/G|frameshift_variant	REV__ING3|p.C376Wfs*2|1|0.21|ENSG00000071243|chr7:120973229-120973230|-/G|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	579.62109375	2	579.762352	1157.51015	-0.65509	-0.0003798	-1.8804	-0.0010902	-2.5355	-0.00147	579.7614928026463	29.3	0.66064	29.3	28.895	29.555	0					23	12	3	0	0	0	0.66712	1	9261	9261		15.847	5.7733	1	8041600	+		55975	16587	40718	41046	54682	54682					-0.06230411435512906
TTTIVEQKF	9	Unmodified	_TTTIVEQKF_					0	0	0		ENST00000354911.8_2_10:28822518-28879725:+|nuORF	ENST00000354911.8_2_10:28822518-28879725:+|nuORF	ENST00000354911.8_2_10:28822518-28879725:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	534.19287109375	2	533.792589	1065.57063	-0.10548	-5.6303E-05	1.0109	0.00053962	0.90545	0.00048332	533.7928228464042	44.829	0.81376	44.829	44.42	45.234	0					23	15	2	0	0	0	0.50484	1	15661	15661		17.443	0	1	3295200			55976	10948	40719	41047	54683	54683					0.04046305894848956
TTTIVEQKF	9	Unmodified	_TTTIVEQKF_					0	0	0		ENST00000354911.8_2_10:28822518-28879725:+|nuORF	ENST00000354911.8_2_10:28822518-28879725:+|nuORF	ENST00000354911.8_2_10:28822518-28879725:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1921997070312	2	533.792589	1065.57063	-0.5902	-0.00031504	0.61253	0.00032696	0.022332	1.1921E-05	533.7926497149374	44.058	0.70859	44.827	44.48	45.188	0.7691					23	13	2	0	0	0	0.16764	1	16420	16420		29.841	14.592	1	3670200			55977	10948	40719	41047	54684	54684					0.04046305894848956
TTTKSKKSKK	10	Unmodified	_TTTKSKKSKK_					0	0	0		ENSG00000274443|ENST00000624510|C8orf89	ENSG00000274443|ENST00000624510|C8orf89	ENSG00000274443|ENST00000624510|C8orf89	MULTI-MSMS	A375_MHC_IP_R1	1	379.9713134765625	3	379.571434	1135.69247	0.069879	2.6524E-05	-0.042245	-1.6035E-05	0.027634	1.0489E-05	379.57136338683745	134.3	0.3537	134.3	134.17	134.52	0					11	6	2	0	0	0	0.72607	1	51815	51815		0.62683	0.62683	1	3504800			55978	10003	40720	41048	54685	54685					0.130053479772414
TTTKSKKSKK	10	Unmodified	_TTTKSKKSKK_					0	0	0		ENSG00000274443|ENST00000624510|C8orf89	ENSG00000274443|ENST00000624510|C8orf89	ENSG00000274443|ENST00000624510|C8orf89	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	379.571434	1135.69247	0.1599	6.0693E-05	-0.21056	-7.9922E-05	-0.050661	-1.9229E-05	379.5712846482261	134.18	0.51192	134.31	134.18	134.7	0.13901	0.0092463	-0.00012919	NaN	0.62683	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4462600			55979	10003	40720	41048							0.130053479772414
TTTLDLTDGTI	11	Unmodified	_TTTLDLTDGTI_					0	0	0		nc|ENSG00000187098|O75030-11|MITF;chr3:69936755-69937822|454|189.49|0.48|8.63|+|ENST00000531774|MITF,MITF;nc|ENSG00000187098|O75030-10|MITF;nc|ENSG00000187098|O75030-9|MITF;nc|ENSG00000187098|O75030-12|MITF;nc|ENSG00000187098|O75030-4|MITF;nc|ENSG00000187098|O75030-3|MITF;nc|ENSG00000187098|O75030-8|MITF;nc|ENSG00000187098|O75030-7|MITF;nc|ENSG00000187098|O75030-6|MITF;nc|ENSG00000187098|O75030-2|MITF;nc|ENSG00000187098|O75030-5|MITF;ENSG00000187098|ENST00000352241|MITF	nc|ENSG00000187098|O75030-11|MITF	nc|ENSG00000187098|O75030-11|MITF	MULTI-SECPEP	A375_MHC_IP_R2	2	384.2862243652344	3	384.199443	1149.5765	-0.3194	-0.00012271	4.3795	0.0016826	4.0601	0.0015599	384.20163653040066	35.595	0.25363	36.358	36.233	36.486	0.76338					7	4	2	0	0	0	0.95991	1	12964	12964		1.1098	0	1	808860			55980	476	40721	41049	54686	54686					0.007693596158787841
TTTMEIRRHY	10	Unmodified	_TTTMEIRRHY_					0	0	0			REV__CPXM2|p.N306I|1|0.38|ENSG00000121898|chr10:123780228-123780228|T/A|missense_variant	REV__CPXM2|p.N306I|1|0.38|ENSG00000121898|chr10:123780228-123780228|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	436.6533203125	3	436.555678	1306.6452	0.076797	3.3526E-05	0.59566	0.00026004	0.67246	0.00029356	436.55601549512926	43.069	0.30648	43.069	42.942	43.249	0					9	5	2	0	0	0	0.90513	1	14967	14967		4.7159	1.8726	1	1029300	+		55981	15912	40722	41050	54687	54687					0.004147454345911683
TTTRTSDY	8	Unmodified	_TTTRTSDY_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.Y6402Ffs*2|1|0.34|ENSG00000183091|chr2:151492486-151492487|AT/-|frameshift_variant;NEB|p.V4554Gfs*42|1|0.12|ENSG00000183091|chr2:151562738-151562739|-/CC|frameshift_variant;NEB|p.L4555Rfs*43|1|0.12|ENSG00000183091|chr2:151562736-151562737|-/CCTGCTCT|frameshift_variant;NEB|p.S2912Pfs*17|1|0.33|ENSG00000183091|chr2:151640012-151640012|A/-|frameshift_variant;NEB|p.T34P|1|0.2|ENSG00000183091|chr2:151727885-151727885|T/G|missense_variant	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MULTI-SECPEP	A375_MHC_IP_R1	1	472.13055419921875	2	472.719621	943.42469	-0.6998	-0.00033081	-0.78197	-0.00036965	-1.4818	-0.00070046	472.71908859452265	68.442	0.81396	68.442	67.955	68.769	0					31	15	3	0	0	0	0.92636	1	24773	24773		16.942	2.104	1	3645100			55982	8464	40723	41051	54688	54688					-0.0492857662119377
TTTSIAKILK	10	Unmodified	_TTTSIAKILK_					0	0	0			REV__ENST00000534575.1_1_8:61300140-61300551:+|nuORF	REV__ENST00000534575.1_1_8:61300140-61300551:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	359.9342956542969	3	359.228897	1074.66486	0.23813	8.5544E-05	-0.36867	-0.00013244	-0.13054	-4.6893E-05	359.2286416453507	20.612	0.5112	20.612	20.384	20.895	0					19	9	3	0	0	0	0.72159	1	5300	5300		2.6312	2.6312	1	2293600	+		55983	25888	40724	41052	54689	54689					0.13051444716984406
TTTSIAKILK	10	Unmodified	_TTTSIAKILK_					0	0	0			REV__ENST00000534575.1_1_8:61300140-61300551:+|nuORF	REV__ENST00000534575.1_1_8:61300140-61300551:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	359.963134765625	3	359.228897	1074.66486	0.23813	8.5544E-05	-0.36867	-0.00013244	-0.13054	-4.6893E-05	359.2286416453507	20.612	0.5112	20.612	20.384	20.895	0					19	9	3	0	0	0	0.92772	1	5331	5331		4.4062	2.6639	1	2293600	+		55984	25888	40724	41052	54690	54690					0.13051444716984406
TTTSLLRSL	9	Unmodified	_TTTSLLRSL_					0	0	0		ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B;HEATR5B|p.N1450Ifs*20|1|0.31|ENSG00000008869|chr2:37008789-37008789|A/-|frameshift_variant	ENSG00000008869|ENST00000233099|HEATR5B;HEATR5B|p.N1450Ifs*20|1|0.31|ENSG00000008869|chr2:37008789-37008789|A/-|frameshift_variant	ENSG00000008869|ENST00000233099|HEATR5B	MULTI-SECPEP	A375_MHC_IP_R2	2	496.692138671875	2	496.292756	990.57096	-0.6322	-0.00031376	-0.71114	-0.00035293	-1.3433	-0.00066669	496.29228162182807	66.199	0.66356	66.937	66.68	67.343	0.73811					18	12	2	0	0	0	0.39273	1	25109	25109		37.075	23.169	1	1038500			55985	965;14103	40725	41053	54691	54691					0.07529725614710969
TTTSSSRIF	9	Unmodified	_TTTSSSRIF_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-SECPEP	A375_MHC_IP_R1	1	500.65869140625	2	500.258914	998.503274	-0.44102	-0.00022063	-0.18241	-9.125E-05	-0.62343	-0.00031188	500.25906401637434	34.431	0.60667	34.431	34.203	34.81	0					25	11	3	0	0	0	0.20059	1	11342	11342		51.415	26.016	1	5686600			55986	6672	40726	41054	54692	54692					0.003962756839200665
TTTSSSRIF	9	Unmodified	_TTTSSSRIF_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-SECPEP	A375_MHC_IP_R2	2	500.6584167480469	2	500.258914	998.503274	-1.0779	-0.00053921	0.029828	1.4922E-05	-1.048	-0.00052428	500.25900154757136	33.59	0.60732	34.342	34.146	34.753	0.75225					21	11	3	0	0	0	0.090157	1	12061	12061		59.368	27.063	1	4186100			55987	6672	40726	41054	54693	54693					0.003962756839200665
TTTTEHRFF	9	Unmodified	_TTTTEHRFF_					0	0	0		nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1	nc|ENSG00000060237|Q9H4A3-2|WNK1	nc|ENSG00000060237|Q9H4A3-2|WNK1	MULTI-MSMS	A375_MHC_IP_R1	1	380.92083740234375	3	380.520851	1138.54072	0.27372	0.00010416	-1.5301	-0.00058222	-1.2563	-0.00047807	380.5201272004911	33.253	0.65955	33.253	32.836	33.496	0					24	12	3	0	0	0	0.030038	1	10839	10839		59.368	36.353	1	3895300			55988	1308	40727	41055	54694	54694					-0.023006330504813377
TTTTEMDILE	10	Unmodified	_TTTTEMDILE_					0	0	0			REV__ENSG00000169116|ENST00000307428|PARM1	REV__ENSG00000169116|ENST00000307428|PARM1	MULTI-SECPEP	A375_MHC_IP_R1	1	577.666748046875	2	577.268287	1152.52202	-0.35794	-0.00020663	-1.2039	-0.000695	-1.5619	-0.00090163	577.2671699276399	28.955	0.71076	28.955	28.592	29.302	0					28	13	3	0	0	0	0.87163	1	8994	8994		19.257	19.257	1	2899600	+		55989	20908	40728	41056	54695	54695					-0.048139755271904505
TTTTRTTTRV	10	Unmodified	_TTTTRTTTRV_					0	0	0			REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1	REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1	MULTI-SECPEP	A375_MHC_IP_R1	1	569.2138671875	2	569.314751	1136.61495	-0.33197	-0.000189	0.54921	0.00031268	0.21724	0.00012368	569.3151500476501	61.56	0.6625	61.56	61.126	61.788	0					17	12	2	0	0	0	0.87163	1	22197	22197		19.257	17.604	1	4293000	+		55990	20510	40729	41057	54696	54696					0.05210710041001221
TTTVPHMLV	9	Unmodified	_TTTVPHMLV_					0	0	0		ENSG00000204703|ENST00000377173|OR2B3	ENSG00000204703|ENST00000377173|OR2B3	ENSG00000204703|ENST00000377173|OR2B3	MULTI-MSMS	A375_MHC_IP_R1	1	499.6747131347656	2	499.770603	997.526652	-0.58709	-0.00029341	-0.13448	-6.721E-05	-0.72157	-0.00036062	499.7705202378954	86.232	0.86021	86.232	85.87	86.73	0					29	16	2	0	0	0	0.083809	1	31565	31565		53.576	7.5546	1	15567000			55991	9475	40730	41058	54697	54697					0.027789981968794564
TTVFMLIVSV	10	Unmodified	_TTVFMLIVSV_					0	0	0		ENST00000563092.1_1_16:66587325-66599911:+|nuORF;nc|ENSG00000254788|Q9UBR5-2|CKLF;nc|ENSG00000254788|Q9UBR5-5|CKLF;ENSG00000217555|ENST00000264001|CKLF	ENST00000563092.1_1_16:66587325-66599911:+|nuORF	ENST00000563092.1_1_16:66587325-66599911:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	370.60150146484375	3	370.547349	1108.62022	0.17179	6.3655E-05	2.3556	0.00087287	2.5274	0.00093652	370.8822125469001	28.154	0.2542	28.833	28.604	28.858	0.67857					6	4	2	0	0	0	0.94516	1	9661	9661		0.12286	0.12286	1	727860			55992	9654	40731	41059	54698	54698					0.07025297579320977
TTVFVRQV	8	Unmodified	_TTVFVRQV_					0	0	0		ENSG00000174136|ENST00000513185|RGMB	ENSG00000174136|ENST00000513185|RGMB	ENSG00000174136|ENST00000513185|RGMB	MSMS	A375_MHC_IP_R1	1	475.352294921875	2	475.276909	948.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.605	1	58.605	58.105	59.105	0								0	0	0	0.16876	1	21055	21055		20.871	5.024	1				55993	7858	40732	41060	54699	54699					0.06293777651433174
TTVGAFVEDE	10	Unmodified	_TTVGAFVEDE_					0	0	0			REV__nc|ENSG00000125630|Q9H9Y6-4|POLR1B	REV__nc|ENSG00000125630|Q9H9Y6-4|POLR1B	MULTI-MSMS	A375_MHC_IP_R1	1	533.71630859375	2	534.248212	1066.48187	-0.67409	-0.00036013	-0.41273	-0.0002205	-1.0868	-0.00058063	534.247909240132	74.194	0.86086	74.194	73.843	74.704	0					47	15	4	0	0	0	0.70496	1	26916	26916		10.074	1.9184	1	32707000	+		55994	18352	40733	41061	54700	54700					-0.048711541354578
TTVGAVFGEEG	11	Unmodified	_TTVGAVFGEEG_					0	0	0		ENST00000388967.3_1_3:36809128-36809431:-|nuORF	ENST00000388967.3_1_3:36809128-36809431:-|nuORF	ENST00000388967.3_1_3:36809128-36809431:-|nuORF	MSMS	A375_MHC_IP_R2	2	533.6821899414062	2	533.756204	1065.49785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.266	1	69.001	68.501	69.501	0.73511								0	0	0	0.16138	1	25869	25869		11.495	2.1116	1				55995	11396	40734	41062	54701	54701					-0.03227447898552782
TTVGSVKW	8	Unmodified	_TTVGSVKW_					0	0	0		ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	MULTI-SECPEP	A375_MHC_IP_R2	2	439.2845458984375	2	439.242535	876.470518	-0.42511	-0.00018673	-0.36839	-0.00016181	-0.79351	-0.00034854	439.24244984390623	44.975	0.55977	45.745	45.492	46.052	0.7691					16	10	2	0	0	0	0.55873	1	16816	16816		49.933	15.831	1	1292400			55996	1554	40735	41063	54702	54702					0.02734113351709766
TTVGSVKW	8	Unmodified	_TTVGSVKW_					0	0	0		ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	439.242535	876.470518	0.018205	7.9966E-06	3.0535	0.0013412	3.0717	0.0013492	439.24252078895813	45.918	0.40657	45.918	45.636	46.043	0	0.086796	0.00291	NaN	49.933	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1360800			55997	1554	40735	41063							0.02734113351709766
TTVNAPLEEPV	11	Unmodified	_TTVNAPLEEPV_					0	0	0			REV__ISLR2|p.G48E|2|0.33|ENSG00000167178|chr15:74132897-74132897|G/A|missense_variant	REV__ISLR2|p.G48E|2|0.33|ENSG00000167178|chr15:74132897-74132897|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	390.9396667480469	3	390.539799	1168.59757	-0.19259	-7.5213E-05	0.18192	7.1045E-05	-0.010672	-4.1678E-06	390.53974219892143	32.198	0.71234	32.935	32.654	33.367	0.73692					25	13	3	0	0	0	0.72728	1	11442	11442		6.2344	0.36622	1	7420000	+		55998	26799	40736	41064	54703	54703					0.020013697153672183
TTVRDIMNRW	10	Unmodified	_TTVRDIMNRW_					0	0	0		ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	MULTI-SECPEP	A375_MHC_IP_R1	1	431.2883605957031	3	431.22404	1290.65029	0.075455	3.2538E-05	-0.52539	-0.00022656	-0.44993	-0.00019402	431.2239632347813	70.233	1.6317	70.233	69.681	71.313	0					49	31	3	0	0	0	0.65002	1	25437	25437		35.996	23.14	1	2672300			55999	7115	40737	41065	54704	54704					0.016590492971999993
TTVRDIMNRW	10	Unmodified	_TTVRDIMNRW_					0	0	0		ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	MULTI-MSMS	A375_MHC_IP_R2	2	431.28790283203125	3	431.22404	1290.65029	-0.13674	-5.8966E-05	-0.27051	-0.00011665	-0.40725	-0.00017562	431.22386040100804	69.402	0.55767	70.136	69.931	70.488	0.73421					19	10	2	0	0	0	0.14143	1	26330	26330		42.068	26.529	1	2780300			56000	7115	40737	41065	54705	54705					0.016590492971999993
TTVWISVAV	9	Unmodified	_TTVWISVAV_					0	0	0		nc|ENSG00000113494|P16471-2|PRLR;ENSG00000113494|ENST00000618457|PRLR;nc|ENSG00000113494|P16471-8|PRLR;nc|ENSG00000113494|P16471-6|PRLR;nc|ENSG00000113494|P16471-9|PRLR;nc|ENSG00000113494|P16471-5|PRLR;nc|ENSG00000113494|P16471-4|PRLR	nc|ENSG00000113494|P16471-2|PRLR	nc|ENSG00000113494|P16471-2|PRLR	MULTI-SECPEP	A375_MHC_IP_R1	1	488.67901611328125	2	488.279118	974.543683	-0.042499	-2.0752E-05	-0.54379	-0.00026552	-0.58629	-0.00028627	488.2786099893089	71.757	0.40259	71.757	71.615	72.018	0					12	7	2	0	0	0	0.43707	1	26176	26176		21.747	1.293	1	2618400			56001	3155	40738	41066	54706	54706					0.05539242074326012
TTWKPLNPNSW	11	Unmodified	_TTWKPLNPNSW_					0	0	0		ENSG00000163257|ENST00000382247|DCAF16	ENSG00000163257|ENST00000382247|DCAF16	ENSG00000163257|ENST00000382247|DCAF16	MULTI-MSMS	A375_MHC_IP_R1	1	672.7400512695312	2	672.340769	1342.66699	-0.83416	-0.00056084	-0.26792	-0.00018013	-1.1021	-0.00074098	672.8426297907034	85.256	0.50878	85.256	85.056	85.565	0					19	9	3	0	0	0	0.00010625	1	31256	31256		135.72	102.93	1	3124600			56002	6641	40739	41067	54707	54707					0.009358734547959102
TTWKPLNPNSW	11	Unmodified	_TTWKPLNPNSW_					0	0	0		ENSG00000163257|ENST00000382247|DCAF16	ENSG00000163257|ENST00000382247|DCAF16	ENSG00000163257|ENST00000382247|DCAF16	MULTI-MATCH	A375_MHC_IP_R2	2		2	672.340769	1342.66699	-0.63205	-0.00042495	-0.23905	-0.00016072	-0.8711	-0.00058567	672.8421879536548	84.51	0.45384	85.247	85.018	85.472	0.73601	-0.0046336	7.9752E-06	NaN	135.72	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1769100			56003	6641	40739	41067							0.009358734547959102
TTWLSCFSY	9	Unmodified	_TTWLSCFSY_					0	0	0		ENSG00000189181|ENST00000342623|OR14I1	ENSG00000189181|ENST00000342623|OR14I1	ENSG00000189181|ENST00000342623|OR14I1	MULTI-MSMS	A375_MHC_IP_R2	2	554.1860961914062	2	554.244418	1106.47428	-0.81219	-0.00045015	-2.2578	-0.0012514	-3.07	-0.0017015	554.2423445386364	31.077	0.25555	31.796	31.719	31.974	0.71857					6	4	2	0	0	0	0.58047	1	10949	10949		15.847	4.2069	1	851500			56004	8969	40740	41068	54708	54708					-0.07469584936734464
TTYPNTYIF	9	Unmodified	_TTYPNTYIF_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-SECPEP	A375_MHC_IP_R2	2	374.2562255859375	3	373.850085	1118.52843	0.44703	0.00016712	-0.35068	-0.0001311	0.096349	3.602E-05	373.84997660103716	27.433	0.45772	28.112	27.843	28.301	0.67857					15	8	3	0	0	0	0.73363	1	9456	9456		4.1895	0	1	2132100			56005	2240	40741	41069	54709	54709					-0.02609669513526569
TTYSTWYLTD	10	Unmodified	_TTYSTWYLTD_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	A375_MHC_IP_R1	1	626.182373046875	2	625.782418	1249.55028	-0.48266	-0.00030204	-0.14138	-8.8474E-05	-0.62404	-0.00039051	625.7826435884998	88.281	0.76528	88.281	87.898	88.663	0					20	14	2	0	0	0	0.92957	1	32411	32411		10.074	0.6908	1	4182700	+		56006	18241	40742	41070	54710	54710					-0.06450909555633189
TTYSTWYLTD	10	Unmodified	_TTYSTWYLTD_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MULTI-MSMS	A375_MHC_IP_R2	2	626.1826782226562	2	625.782418	1249.55028	-0.71627	-0.00044823	0.16947	0.00010605	-0.5468	-0.00034218	625.7827383928939	87.638	0.60683	88.369	88.116	88.722	0.7318					31	11	4	0	0	0	0.70496	1	33366	33366		10.074	0.6908	1	5028700	+		56007	18241	40742	41070	54711	54711					-0.06450909555633189
TTYSTWYLTD	10	Unmodified	_TTYSTWYLTD_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	625.782418	1249.55028	-0.71627	-0.00044823	0.16947	0.00010605	-0.5468	-0.00034218	625.7827383928939	87.638	0.60683	88.369	88.116	88.722	0.7318	0.044242	0.0001753	NaN	10.074	31	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5028700	+		56008	18241	40742	41070							-0.06450909555633189
TVAARLTEG	9	Unmodified	_TVAARLTEG_					0	0	0			REV__nc|ENSG00000160299|O95613-2|PCNT	REV__nc|ENSG00000160299|O95613-2|PCNT	MULTI-MSMS	A375_MHC_IP_R2	2	459.6689758300781	2	459.256174	916.497795	-0.26358	-0.00012105	-0.46825	-0.00021505	-0.73183	-0.0003361	459.2559197058639	47.997	0.25131	48.758	48.532	48.783	0.76128					7	4	2	0	0	0	0.57432	1	17945	17945		16.149	0.30192	1	1306400	+		56009	20160	40743	41071	54712	54712					0.03620596892096728
TVAATASLGTF	11	Unmodified	_TVAATASLGTF_					0	0	0		ENST00000602502.1_1_5:134735225-134735384:+|nuORF	ENST00000602502.1_1_5:134735225-134735384:+|nuORF	ENST00000602502.1_1_5:134735225-134735384:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	520.23681640625	2	519.776939	1037.53933	-0.61328	-0.00031877	-1.1225	-0.00058344	-1.7358	-0.00090221	519.7767720243963	70.349	0.96487	71.084	70.437	71.402	0.73421					25	18	2	0	0	0	0.72649	1	26529	26529		12.241	2.1667	1	1955600			56010	13884	40744	41072	54713	54713					0.022057328607616
TVADHIQKV	9	Unmodified	_TVADHIQKV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-SECPEP	A375_MHC_IP_R2	2	506.1847229003906	2	505.785099	1009.55564	-1.0091	-0.00051038	0.18584	9.3996E-05	-0.82324	-0.00041638	505.785179085311	23.491	0.30335	24.121	23.979	24.283	0.63015					11	5	3	0	0	0	0.011191	1	7591	7591		110.55	81.471	1	8637900			56011	8361	40745	41073	54714	54714					0.051248588175326404
TVADKIHSV	9	Unmodified	_TVADKIHSV_					0	0	0		ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	MULTI-MSMS	A375_MHC_IP_R1	1	485.6716613769531	2	485.271824	968.529095	-0.32135	-0.00015594	-0.23743	-0.00011522	-0.55878	-0.00027116	485.2716910883724	25.382	1.1686	25.382	25.204	26.373	0					57	22	4	0	0	0	0.010078	1	7401	7401		176.43	87.523	1	157160000			56012	10016	40746	41074	54715	54715					0.043571699261860886
TVADKIHSV	9	Unmodified	_TVADKIHSV_					0	0	0		ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	MULTI-MSMS	A375_MHC_IP_R2	2	485.6716613769531	2	485.271824	968.529095	-0.99306	-0.00048191	-0.098511	-4.7804E-05	-1.0916	-0.00052971	485.2717218114017	24.745	0.91545	25.389	25.212	26.128	0.64368					48	17	4	0	0	0	0.010078	2	8180	8180;8460		176.43	87.523	1	176240000			56013	10016	40746	41074	54716;54717	54716					0.043571699261860886
TVADVVLWSV	10	Unmodified	_TVADVVLWSV_					0	0	0		ENSG00000106305|ENST00000223029|AIMP2;nc|ENSG00000106305|Q13155-2|AIMP2	ENSG00000106305|ENST00000223029|AIMP2	ENSG00000106305|ENST00000223029|AIMP2	MSMS	A375_MHC_IP_R1	1	544.708740234375	2	544.802957	1087.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.73	1	129.73	129.23	130.23	0								0	0	0	0.027171	1	49904	49904		65.235	30.833	1				56014	2683	40747	41075	54718	54718					0.05106896274514838
TVADVVLWSV	10	Unmodified	_TVADVVLWSV_					0	0	0		ENSG00000106305|ENST00000223029|AIMP2;nc|ENSG00000106305|Q13155-2|AIMP2	ENSG00000106305|ENST00000223029|AIMP2	ENSG00000106305|ENST00000223029|AIMP2	MSMS	A375_MHC_IP_R2	2	544.7088012695312	2	544.802957	1087.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.52	1	129.76	129.26	130.26	0.23946								0	0	0	0.10147	1	50902	50902		43.858	13.222	1				56015	2683	40747	41075	54719	54719					0.05106896274514838
TVAEADIF	8	Unmodified	_TVAEADIF_					0	0	0		ENSG00000119906|ENST00000238961|SLF2;nc|ENSG00000119906|Q8IX21-2|SLF2	ENSG00000119906|ENST00000238961|SLF2	ENSG00000119906|ENST00000238961|SLF2	MSMS	A375_MHC_IP_R1	1	433.2850036621094	2	433.218726	864.422899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.23	1	136.23	135.73	136.73	0								0	0	0	0.16876	1	52484	52484		2.5775	0	1				56016	3632	40748	41076	54720	54720					-0.014735856391325797
TVAEEESIY	9	Unmodified	_TVAEEESIY_					0	0	0			REV__VCAN|p.V1595I|1|0.06|ENSG00000038427|chr5:83537786-83537786|G/A|missense_variant	REV__VCAN|p.V1595I|1|0.06|ENSG00000038427|chr5:83537786-83537786|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	520.7325439453125	2	520.742762	1039.47097	-0.56474	-0.00029408	0.073416	3.8231E-05	-0.49132	-0.00025585	520.7427551183695	83.608	0.96588	83.608	83.175	84.141	0					41	18	3	0	0	0	0.63811	1	30490	30490		12.532	0.89125	1	12720000	+		56017	28980	40749	41077	54721	54721					-0.04718556509737937
TVAEEESIY	9	Unmodified	_TVAEEESIY_					0	0	0			REV__VCAN|p.V1595I|1|0.06|ENSG00000038427|chr5:83537786-83537786|G/A|missense_variant	REV__VCAN|p.V1595I|1|0.06|ENSG00000038427|chr5:83537786-83537786|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	520.742762	1039.47097	-0.56474	-0.00029408	0.073416	3.8231E-05	-0.49132	-0.00025585	520.7427551183695	83.608	0.96588	83.608	83.175	84.141	0	-0.08148	0.0001672	NaN	12.532	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12720000	+		56018	28980	40749	41077							-0.04718556509737937
TVAEMMLLPV	10	Unmodified	_TVAEMMLLPV_					0	0	0			REV__ENST00000354179.8_2_5:176637270-176637354:+|nuORF	REV__ENST00000354179.8_2_5:176637270-176637354:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	552.6957397460938	2	552.295596	1102.57664	-1.1817	-0.00065267	1.4622	0.00080756	0.28045	0.00015489	552.2966636986749	59.187	0.80983	59.934	59.489	60.299	0.74714					25	15	3	0	0	0	0.78945	1	22439	22439		13.906	0	1	3232800	+		56019	23806	40750	41078	54722	54722					0.02945364810511819
TVAFRDLPV	9	Unmodified	_TVAFRDLPV_					0	0	0		ENST00000602034.1_1_19:39408732-39410638:-|nuORF;ENSG00000104835|ENST00000221431|SARS2;nc|ENSG00000104835|Q9NP81-2|SARS2	ENST00000602034.1_1_19:39408732-39410638:-|nuORF	ENST00000602034.1_1_19:39408732-39410638:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	508.70208740234375	2	509.290017	1016.56548	-0.57076	-0.00029068	-0.61585	-0.00031365	-1.1866	-0.00060433	509.2901640666665	65.897	0.40634	65.897	65.616	66.022	0					12	7	2	0	0	0	0.4261	1	23903	23903		30.637	0	1	525040			56020	2541	40751	41079	54723	54723					0.057860468229023354
TVAGAIWTI	9	Unmodified	_TVAGAIWTI_					0	0	0			REV__nc|ENSG00000130377|Q5FVE4-4|ACSBG2	REV__nc|ENSG00000130377|Q5FVE4-4|ACSBG2	MULTI-SECPEP	A375_MHC_IP_R1	1	465.68670654296875	2	466.26601	930.517468	-0.30959	-0.00014435	-0.77214	-0.00036002	-1.0817	-0.00050438	466.265406323459	64.741	0.71047	64.741	64.495	65.206	0					15	13	2	0	0	0	0.65246	1	23571	23571		10.824	7.2274	1	894170	+		56021	18536	40752	41080	54724	54724					0.049429729028588554
TVAGKSILT	9	Unmodified	_TVAGKSILT_					0	0	0		ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	MULTI-MSMS	A375_MHC_IP_R1	1	445.67138671875	2	445.271293	888.528032	-0.084232	-3.7506E-05	0.19302	8.5945E-05	0.10878	4.8438E-05	445.27130096962406	59.117	0.51004	59.117	58.887	59.397	0					15	9	2	0	0	0	0.51106	1	21274	21274		19.257	0	1	2082800			56022	9301	40753	41081	54725	54725					0.0793095555727632
TVAGVPCQEW	10	Unmodified	_TVAGVPCQEW_					0	0	0		CON__P06868	CON__P06868	CON__P06868	MSMS	A375_MHC_IP_R2	2	545.1528930664062	2	545.255317	1088.49608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.288	1	98.044	97.544	98.544	0.75586								0	0	0	0.15158	1	36927	36927		14.838	0.93222	1			+	56023	591	40754	41082	54726	54726					-0.04462780188191573
TVAHGLTHGV	10	Unmodified	_TVAHGLTHGV_					0	0	0			REV__ENST00000603038.1_1_19:34617909-34618176:+|nuORF	REV__ENST00000603038.1_1_19:34617909-34618176:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	496.6692810058594	2	496.269616	990.524678	-0.35591	-0.00017663	-1.6789	-0.00083317	-2.0348	-0.0010098	496.26892828881586	57.379	0.50913	57.379	57.109	57.618	0					14	9	2	0	0	0	0.48529	1	20623	20623		29.082	1.4528	1	1478000	+		56024	26522	40755	41083	54727	54727					0.029037055032858916
TVAHRQLAI	9	Unmodified	_TVAHRQLAI_					0	0	0			REV__ENSG00000080200|ENST00000389622|CRYBG3	REV__ENSG00000080200|ENST00000389622|CRYBG3	MULTI-SECPEP	A375_MHC_IP_R2	2	505.2005920410156	2	504.801083	1007.58761	-0.8362	-0.00042212	0.19218	9.7014E-05	-0.64402	-0.0003251	504.8010452488672	39.212	0.51093	39.987	39.708	40.219	0.77451					18	9	3	0	0	0	0.58271	1	14458	14458		10.074	0	1	5779800	+		56025	16744	40756	41084	54728	54728					0.0841227129130857
TVAIRSIVNKL	11	Unmodified	_TVAIRSIVNKL_					0	0	0			REV__ENST00000371711.4_1_20:48252057-48252144:-|nuORF	REV__ENST00000371711.4_1_20:48252057-48252144:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	405.6031494140625	3	405.259079	1212.75541	-0.37938	-0.00015375	3.6796	0.0014912	3.3002	0.0013374	405.93074449910654	23.192	0.30348	23.192	22.974	23.278	0					14	5	4	0	0	0	0.72651	1	6273	6273		12.228	1.9124	1	3533700	+		56026	24048	40757	41085	54729	54729					0.15753913765274774
TVALLHEDRV	10	Unmodified	_TVALLHEDRV_					0	0	0		ENST00000572221.5_1_16:67909733-67911757:+|nuORF	ENST00000572221.5_1_16:67909733-67911757:+|nuORF	ENST00000572221.5_1_16:67909733-67911757:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	577.2218627929688	2	576.822212	1151.62987	-0.4207	-0.00024267	-0.52734	-0.00030418	-0.94804	-0.00054685	576.8218834867927	51.644	0.7636	52.397	52.169	52.932	0.75225					31	14	3	0	0	0	0.92514	1	19425	19425		8.1555	4.8742	1	16690000			56027	13615	40758	41086	54730	54730					0.060122019090158574
TVALLTRIF	9	Unmodified	_TVALLTRIF_					0	0	0			REV__ENSG00000140299|ENST00000607373|BNIP2	REV__ENSG00000140299|ENST00000607373|BNIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1814575195312	2	517.32386	1032.63317	-0.84277	-0.00043598	0.18479	9.5595E-05	-0.65798	-0.00034039	517.3239073569634	50.815	0.30331	51.569	51.361	51.665	0.75406					7	5	2	0	0	0	0.73363	1	19116	19116		1.4819	0	1	900760	+		56028	19201	40759	41087	54731	54731					0.11815496753706611
TVALPTETLY	10	Unmodified	_TVALPTETLY_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	A375_MHC_IP_R2	2	555.48876953125	2	554.300247	1106.58594	-0.6413	-0.00035547	0.77148	0.00042763	0.13017	7.2156E-05	554.3002309736698	93.57	0.66083	94.314	93.956	94.616	0.74474					29	12	4	0	0	0	0.70496	1	35608	35608		10.074	0	1	1932700	+		56029	21639	40760	41088	54732	54732					0.03691172692060718
TVALQCKA	8	Unmodified	_TVALQCKA_					0	0	0		LRIG1|p.G718R|1|0.33|ENSG00000144749|chr3:66383321-66383321|C/T|missense_variant;LRIG1|p.G718E|1|0.2|ENSG00000144749|chr3:66383320-66383320|C/T|missense_variant;LRIG1|p.G707R|1|0.39|ENSG00000144749|chr3:66383354-66383354|C/T|missense_variant;ENST00000495037.1_1_3:66430689-66454678:-|nuORF;ENST00000496559.6_1_3:66430689-66456253:-|nuORF;nc|ENSG00000144749|Q96JA1-2|LRIG1;ENSG00000144749|ENST00000273261|LRIG1	LRIG1|p.G718R|1|0.33|ENSG00000144749|chr3:66383321-66383321|C/T|missense_variant	LRIG1|p.G718R|1|0.33|ENSG00000144749|chr3:66383321-66383321|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	417.2825927734375	2	417.231113	832.447674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.429	1	52.429	51.929	52.929	0								0	0	0	0.16876	1	18645	18645		24.674	0	1				56030	5515	40761	41089	54733	54733					0.02474770962578532
TVAPFNPTV	9	Unmodified	_TVAPFNPTV_					0	0	0		nc|ENSG00000116497|Q96BU1-2|S100PBP;ENST00000531123.5_1_1:33290993-33299636:+|nuORF;ENST00000356689.7_1_1:33290993-33299636:+|nuORF;ENSG00000116497|ENST00000373475|S100PBP	nc|ENSG00000116497|Q96BU1-2|S100PBP	nc|ENSG00000116497|Q96BU1-2|S100PBP	MULTI-MSMS	A375_MHC_IP_R2	2	945.9046630859375	1	945.504009	944.496732	-0.081672	-7.7221E-05	-0.30419	-0.00028761	-0.38586	-0.00036483	945.5036992509142	79.34	0.5035	80.085	79.796	80.299	0.74474					15	9	2	0	0	0	0.073067	1	30171	30171		55.503	2.0987	1	3610600			56031	3401	40762	41090	54734	54734					0.022263825231902956
TVAPFNPTV	9	Unmodified	_TVAPFNPTV_					0	0	0		nc|ENSG00000116497|Q96BU1-2|S100PBP;ENST00000531123.5_1_1:33290993-33299636:+|nuORF;ENST00000356689.7_1_1:33290993-33299636:+|nuORF;ENSG00000116497|ENST00000373475|S100PBP	nc|ENSG00000116497|Q96BU1-2|S100PBP	nc|ENSG00000116497|Q96BU1-2|S100PBP	MULTI-MATCH	A375_MHC_IP_R1	1		1	945.504009	944.496732	-0.053191	-5.0293E-05	-0.0041395	-3.9139E-06	-0.057331	-5.4207E-05	945.5040320837492	80.08	0.61199	80.08	79.778	80.39	0	-0.0027676	0.00012107	NaN	55.503	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3972200			56032	3401	40762	41090							0.022263825231902956
TVAPIDPRQF	10	Unmodified	_TVAPIDPRQF_					0	0	0		SAMD7|p.T39I|1|0.39|ENSG00000187033|chr3:169921243-169921243|C/T|missense_variant	SAMD7|p.T39I|1|0.39|ENSG00000187033|chr3:169921243-169921243|C/T|missense_variant	SAMD7|p.T39I|1|0.39|ENSG00000187033|chr3:169921243-169921243|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	572.7111206054688	2	572.31148	1142.60841	-0.42356	-0.00024241	-0.81481	-0.00046632	-1.2384	-0.00070873	572.3115115923075	54.83	0.5624	55.581	55.37	55.933	0.75075					28	10	5	0	0	0	0.69172	1	20690	20690		19.257	0	1	5209900			56033	29106	40763	41091	54735	54735					0.0428081688032762
TVAQHITSDKF	11	Unmodified	_TVAQHITSDKF_					0	0	0		ENST00000336184.6_1_1:211547904-211548087:+|nuORF	ENST00000336184.6_1_1:211547904-211548087:+|nuORF	ENST00000336184.6_1_1:211547904-211548087:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	416.4306335449219	3	416.21906	1245.63535	-0.16494	-6.8653E-05	0.39141	0.00016291	0.22646	9.4258E-05	416.2192414767402	40.631	0.35666	41.406	41.183	41.54	0.77451					10	6	2	0	0	0	0.99607	1	14962	14962		5.5233	1.4067	1	1030100			56034	10812	40764	41092	54736	54736					0.022358807008458825
TVAQIKATV	9	Unmodified	_TVAQIKATV_					0	0	0		ENSG00000258315|ENST00000439424|C17orf49;nc|ENSG00000258315|Q8IXM2-3|BAP18	ENSG00000258315|ENST00000439424|C17orf49	ENSG00000258315|ENST00000439424|C17orf49	MULTI-SECPEP	A375_MHC_IP_R2	2	466.18402099609375	2	465.784567	929.554582	-0.84186	-0.00039213	0.39671	0.00018478	-0.44516	-0.00020735	465.7847334482978	35.646	0.35537	36.409	36.283	36.638	0.76338					11	6	2	0	0	0	0.41731	1	12975	12975		29.437	0	1	2044400			56035	9915	40765	41093	54737	54737					0.08698644448611503
TVAQKNFDL	9	Unmodified	_TVAQKNFDL_					0	0	0		MPP3|p.P117L|1|0.22|ENSG00000161647|chr17:43829745-43829745|G/A|missense_variant	MPP3|p.P117L|1|0.22|ENSG00000161647|chr17:43829745-43829745|G/A|missense_variant	MPP3|p.P117L|1|0.22|ENSG00000161647|chr17:43829745-43829745|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	517.6867065429688	2	518.277106	1034.53966	-0.48229	-0.00024996	0.63129	0.00032718	0.149	7.7221E-05	518.277304691827	50.178	0.6651	50.178	49.743	50.408	0					20	12	2	0	0	0	0.56537	1	17690	17690		22.736	11.937	1	4158800			56036	14396	40766	41094	54738	54738					0.023771525806068894
TVAQLEYPLGT	11	Unmodified	_TVAQLEYPLGT_					0	0	0			REV__ENSG00000005238|ENST00000322813|ATOSB	REV__ENSG00000005238|ENST00000322813|ATOSB	MULTI-SECPEP	A375_MHC_IP_R2	2	596.2128295898438	2	596.316428	1190.6183	-0.39941	-0.00023817	-2.8088	-0.0016749	-3.2082	-0.0019131	596.3154339862435	46.683	0.40674	47.444	47.206	47.613	0.76127					9	7	2	0	0	0	0.94168	1	17504	17504		7.1017	0	1	1062100	+		56037	16117	40767	41095	54739	54739					0.03061960095055838
TVARLCLLW	9	Unmodified	_TVARLCLLW_					0	0	0			REV__PLEKHN1|p.R539Pfs*81|1|0.03|ENSG00000187583|chr1:973857-973858|-/CT|frameshift_variant	REV__PLEKHN1|p.R539Pfs*81|1|0.03|ENSG00000187583|chr1:973857-973858|-/CT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	537.7083740234375	2	537.810062	1073.60557	-0.69251	-0.00037244	0.43193	0.00023229	-0.26059	-0.00014015	537.8104301638041	47.328	0.35745	47.328	47.159	47.517	0					10	6	2	0	0	0	0.78348	1	16699	16699		4.3292	0	1	1676800	+		56038	22030	40768	41096	54740	54740					0.0717127022180648
TVARPLVHE	9	Unmodified	_TVARPLVHE_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-SECPEP	A375_MHC_IP_R1	1	511.98828125	2	511.293091	1020.57163	-0.47031	-0.00024047	-0.39855	-0.00020377	-0.86886	-0.00044424	511.292864400945	43.833	0.40631	43.833	43.603	44.01	0					12	7	2	0	0	0	0.62767	1	15176	15176		16.942	3.4344	1	1802200			56039	9912	40769	41097	54741	54741					0.06216565054421608
TVASECPSLRF	11	Unmodified	_TVASECPSLRF_					0	0	0		ACSM2B|p.I179F|1|0.35|ENSG00000066813|chr16:20555330-20555330|T/A|missense_variant	ACSM2B|p.I179F|1|0.35|ENSG00000066813|chr16:20555330-20555330|T/A|missense_variant	ACSM2B|p.I179F|1|0.35|ENSG00000066813|chr16:20555330-20555330|T/A|missense_variant	MSMS	A375_MHC_IP_R1	1	605.3564453125	2	605.300255	1208.58596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.556	1	90.556	90.056	91.056	0								0	0	0	0.162	1	33280	33280		14.405	7.1161	1				56040	35	40770	41098	54742	54742					-0.00999150579605157
TVASHISE	8	Unmodified	_TVASHISE_					0	0	0			REV__ENSG00000169231|ENST00000368378|THBS3	REV__ENSG00000169231|ENST00000368378|THBS3	MULTI-MSMS	A375_MHC_IP_R1	1	422.1583251953125	2	422.213975	842.413397	-0.063908	-2.6983E-05	0.16213	6.8452E-05	0.098219	4.1469E-05	422.21400660305517	40.14	0.71452	40.14	39.794	40.509	0					30	13	3	0	0	0	0.70843	1	13700	13700		32.117	0	1	7105300	+		56041	20920	40771	41099	54743	54743					-0.014113539246523032
TVATARSTLF	10	Unmodified	_TVATARSTLF_					0	0	0			REV__ENST00000429067.5_1_7:131011611-131012404:-|nuORF	REV__ENST00000429067.5_1_7:131011611-131012404:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	356.60076904296875	3	356.201229	1065.58186	-0.60144	-0.00021423	0.011208	3.9924E-06	-0.59023	-0.00021024	356.20119389078707	57.193	0.45895	57.943	57.662	58.121	0.75015					14	8	2	0	0	0	0.59108	1	21632	21632		14.218	7.5947	1	3445700	+		56042	24684	40772	41100	54744	54744					0.051691279890064834
TVATARSTLF	10	Unmodified	_TVATARSTLF_					0	0	0			REV__ENST00000429067.5_1_7:131011611-131012404:-|nuORF	REV__ENST00000429067.5_1_7:131011611-131012404:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	356.201229	1065.58186	-0.030222	-1.0765E-05	0.011765	4.1908E-06	-0.018456	-6.5742E-06	356.20121063738316	58.203	0.40462	58.203	57.923	58.328	0	0.12969	2.2342E-07	NaN	14.218	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2647600	+		56043	24684	40772	41100							0.051691279890064834
TVATARSTLF	10	Unmodified	_TVATARSTLF_					0	0	0			REV__ENST00000429067.5_1_7:131011611-131012404:-|nuORF	REV__ENST00000429067.5_1_7:131011611-131012404:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	356.201229	1065.58186	-0.60144	-0.00021423	0.011208	3.9924E-06	-0.59023	-0.00021024	356.20119389078707	57.193	0.45895	57.943	57.662	58.121	0.75015	-0.12969	-3.7168E-07	NaN	14.218	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3445700	+		56044	24684	40772	41100							0.051691279890064834
TVAVSLGT	8	Unmodified	_TVAVSLGT_					0	0	0		ENST00000565655.1_2_16:14989498-14989965:+|nuORF	ENST00000565655.1_2_16:14989498-14989965:+|nuORF	ENST00000565655.1_2_16:14989498-14989965:+|nuORF	MSMS	A375_MHC_IP_R1	1	374.2659912109375	2	374.215986	746.417419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.053	1	56.053	55.553	56.553	0								0	0	0	0.16876	1	20069	20069		4.756	0	1				56045	13548	40773	41101	54745	54745					0.03406735569058128
TVCCELSSL	9	Unmodified	_TVCCELSSL_					0	0	0		ENSG00000154415|ENST00000284601|PPP1R3A	ENSG00000154415|ENST00000284601|PPP1R3A	ENSG00000154415|ENST00000284601|PPP1R3A	MULTI-MSMS	A375_MHC_IP_R1	1	477.6689147949219	2	477.717178	953.419804	-0.48665	-0.00023248	-2.3092	-0.0011031	-2.7958	-0.0013356	477.7157433769796	60.367	0.30455	60.367	60.159	60.464	0					7	5	2	0	0	0	0.64808	1	21730	21730		11.64	1.4569	1	642460			56046	6085	40774	41102	54746	54746					-0.058769200797996746
TVCDDDWDF	9	Unmodified	_TVCDDDWDF_					0	0	0		ENSG00000146700|ENST00000275560|SSC4D	ENSG00000146700|ENST00000275560|SSC4D	ENSG00000146700|ENST00000275560|SSC4D	MSMS	A375_MHC_IP_R1	1	558.1748657226562	2	558.202947	1114.39134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.264	1	83.264	82.764	83.764	0								0	0	0	0.15486	1	30465	30465		4.756	0	1				56047	5631	40775	41103	54747	54747					-0.16127946455412712
TVCDVRFDV	9	Unmodified	_TVCDVRFDV_					0	0	0		nc|ENSG00000133958|Q9P2D8-2|UNC79;nc|ENSG00000133958|Q9P2D8|UNC79;nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79	nc|ENSG00000133958|Q9P2D8-2|UNC79	nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-SECPEP	A375_MHC_IP_R2	2	526.6741333007812	2	527.255317	1052.49608	-0.63126	-0.00033284	-0.021182	-1.1169E-05	-0.65244	-0.00034401	527.2552885190689	55.915	0.81399	56.665	56.186	57	0.75015					30	15	3	0	0	0	0.62767	1	21099	21099		23.148	6.2061	1	13530000			56048	14608	40776	41104	54748	54748					-0.02806780188166158
TVCEDVNECM	10	Unmodified	_TVCEDVNECM_					0	0	0		ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	MULTI-SECPEP	A375_MHC_IP_R2	2	380.9575500488281	3	381.476937	1141.40898	-0.099282	-3.7874E-05	2.7554	0.0010511	2.6561	0.0010133	381.81213684841725	82.137	0.55978	82.88	82.533	83.093	0.74293					20	10	3	0	0	0	0.94862	1	31105	31105		0	0	1	948150			56049	3608	40777	41105	54749	54749					-0.15606690516392518
TVCLKTFTAK	10	Unmodified	_TVCLKTFTAK_					0	0	0		ENSG00000186130|ENST00000373659|ZBTB6	ENSG00000186130|ENST00000373659|ZBTB6	ENSG00000186130|ENST00000373659|ZBTB6	MULTI-SECPEP	A375_MHC_IP_R1	1	371.61114501953125	3	371.210849	1110.61072	0.37648	0.00013975	-0.1339	-4.9704E-05	0.24258	9.0048E-05	371.2107487034697	31.719	0.40701	31.719	31.514	31.921	0					17	7	3	0	0	0	0.93961	1	10228	10228		0.56317	0	1	2745900			56050	8722	40778	41106	54750	54750					0.05983529293780521
TVCMSQRY	8	Unmodified	_TVCMSQRY_					0	0	0			REV__ENST00000397560.6_1_7:139784896-139785067:-|nuORF	REV__ENST00000397560.6_1_7:139784896-139785067:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	493.6542663574219	2	494.222962	986.431372	-0.77439	-0.00038272	0.81886	0.0004047	0.044468	2.1977E-05	494.22333918989784	33.313	0.55957	34.065	33.789	34.348	0.75225					25	10	3	0	0	0	0.86263	1	11956	11956		34.102	34.102	1	12202000	+		56051	24360	40779	41107	54751	54751					-0.06238678265822273
TVCWCYGTY	9	Unmodified	_TVCWCYGTY_					0	0	0			REV__nc|ENSG00000198732|Q9H4F8|SMOC1	REV__nc|ENSG00000198732|Q9H4F8|SMOC1	MULTI-SECPEP	A375_MHC_IP_R2	2	547.6273803710938	2	548.217346	1094.42014	-0.65659	-0.00035996	-2.0555	-0.0011268	-2.7121	-0.0014868	548.2158512157362	86.773	0.55715	87.506	87.255	87.812	0.733					16	10	2	0	0	0	0.75466	1	32999	32999		7.9102	0.62092	1	1120400	+		56052	17739	40780	41108	54752	54752					-0.12329500359942358
TVDAQHVKAW	10	Unmodified	_TVDAQHVKAW_					0	0	0		nc|ENSG00000178188|Q9NRF2-2|SH2B1;nc|ENSG00000178188|Q9NRF2-3|SH2B1;ENSG00000178188|ENST00000684370|SH2B1	nc|ENSG00000178188|Q9NRF2-2|SH2B1	nc|ENSG00000178188|Q9NRF2-2|SH2B1	MULTI-SECPEP	A375_MHC_IP_R1	1	577.1906127929688	2	577.80128	1153.58801	-0.026168	-1.512E-05	-1.4602	-0.00084373	-1.4864	-0.00085885	577.8002912093084	68.865	0.60896	68.865	68.666	69.275	0					17	11	2	0	0	0	0.78945	1	24979	24979		19.257	0	1	1725500			56053	8142	40781	41109	54753	54753					0.017356462205270873
TVDARVYSY	9	Unmodified	_TVDARVYSY_					0	0	0		ENST00000378952.7_1_10:12209703-12222485:-|nuORF;ENSG00000165609|ENST00000491614|NUDT5	ENST00000378952.7_1_10:12209703-12222485:-|nuORF	ENST00000378952.7_1_10:12209703-12222485:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	537.6660766601562	2	537.266739	1072.51892	-0.79511	-0.00042718	-0.74952	-0.00040269	-1.5446	-0.00082987	537.2664531113702	40.956	0.86058	40.956	40.609	41.47	0					34	16	3	0	0	0	0.11638	1	14085	14085		47.732	14.287	1	10411000			56054	6969	40782	41110	54754	54754					-0.014434377990482972
TVDARVYSY	9	Unmodified	_TVDARVYSY_					0	0	0		ENST00000378952.7_1_10:12209703-12222485:-|nuORF;ENSG00000165609|ENST00000491614|NUDT5	ENST00000378952.7_1_10:12209703-12222485:-|nuORF	ENST00000378952.7_1_10:12209703-12222485:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	537.6659545898438	2	537.266739	1072.51892	-0.93285	-0.00050119	0.11761	6.3188E-05	-0.81524	-0.000438	537.266655641012	40.273	0.71111	41.048	40.727	41.438	0.77451					37	13	4	0	0	0	0.052747	1	14879	14879		63.227	22.988	1	14931000			56055	6969	40782	41110	54755	54755					-0.014434377990482972
TVDATWQIQ	9	Unmodified	_TVDATWQIQ_					0	0	0			REV__ENSG00000183914|ENST00000572933|DNAH2	REV__ENSG00000183914|ENST00000572933|DNAH2	MULTI-SECPEP	A375_MHC_IP_R2	2	530.6874389648438	2	531.266739	1060.51892	-0.56741	-0.00030145	0.012474	6.6271E-06	-0.55494	-0.00029482	531.7681313129691	42.964	0.45536	43.737	43.421	43.876	0.7724					16	8	3	0	0	0	0.53748	1	16000	16000		30.637	5.2372	1	1841000	+		56056	21788	40783	41111	54756	54756					-0.008914377990549838
TVDAVNYLW	9	Unmodified	_TVDAVNYLW_					0	0	0			REV__ENST00000537589.1_2_2:65301228-65301667:+|nuORF	REV__ENST00000537589.1_2_2:65301228-65301667:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	541.1533203125	2	540.771657	1079.52876	-0.73418	-0.00039702	0.51236	0.00027707	-0.22182	-0.00011995	540.7717912627021	68.663	0.55569	69.398	69.07	69.626	0.73511					17	10	2	0	0	0	0.28475	1	25996	25996		39.957	9.3208	1	3141600	+		56057	16214	40784	41112	54757	54757					-0.007822497936786021
TVDDEAPAV	9	Unmodified	_TVDDEAPAV_					0	0	0		ENST00000562816.5_1_16:89383456-89484700:-|nuORF;ENST00000378330.6_1_16:89383456-89484700:-|nuORF;ENST00000330736.9_1_16:89383456-89383540:-|nuORF	ENST00000562816.5_1_16:89383456-89484700:-|nuORF	ENST00000562816.5_1_16:89383456-89484700:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	916.8256225585938	1	916.425818	915.418542	-0.25464	-0.00023336	0.2794	0.00025605	0.024759	2.2689E-05	916.425963380018	41.84	0.66238	41.84	41.571	42.233	0					17	12	2	0	0	0	0.067501	1	14522	14522		57.471	6.6163	1	3825400			56058	10762	40785	41113	54758	54758					-0.04255094852715047
TVDDEAPAV	9	Unmodified	_TVDDEAPAV_					0	0	0		ENST00000562816.5_1_16:89383456-89484700:-|nuORF;ENST00000378330.6_1_16:89383456-89484700:-|nuORF;ENST00000330736.9_1_16:89383456-89383540:-|nuORF	ENST00000562816.5_1_16:89383456-89484700:-|nuORF	ENST00000562816.5_1_16:89383456-89484700:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	916.425818	915.418542	-0.58874	-0.00053954	-0.085115	-7.8001E-05	-0.67386	-0.00061754	916.4257393238518	41.145	0.50644	41.92	41.692	42.198	0.77451	0.039817	-0.00018801	NaN	57.471	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4007400			56059	10762	40785	41113							-0.04255094852715047
TVDDQCQEWF	10	Unmodified	_TVDDQCQEWF_					0	0	0			REV__ENSG00000171357|ENST00000371980|LURAP1	REV__ENSG00000171357|ENST00000371980|LURAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	635.2112426757812	2	635.755878	1269.4972	-0.84414	-0.00053667	0.88691	0.00056386	0.042767	2.7189E-05	635.7568414592537	74.68	0.25352	75.417	75.214	75.467	0.73751					5	4	2	0	0	0	0.9269	1	28330	28330		10.824	9.1713	1	462840	+		56060	21061	40786	41114	54759	54759					-0.12676610609923955
TVDDVCSFVG	10	Unmodified	_TVDDVCSFVG_					0	0	0		nc|ENSG00000187634|Q96NU1-1|SAMD11;nc|ENSG00000187634|Q96NU1-2|SAMD11;nc|ENSG00000187634|Q96NU1-6|SAMD11;nc|ENSG00000187634|Q96NU1-4|SAMD11;nc|ENSG00000187634|Q96NU1|SAMD11;nc|ENSG00000187634|Q96NU1-5|SAMD11;ENSG00000187634|ENST00000616016|SAMD11	nc|ENSG00000187634|Q96NU1-1|SAMD11	nc|ENSG00000187634|Q96NU1-1|SAMD11	MULTI-MSMS	A375_MHC_IP_R2	2	521.7241821289062	2	521.231507	1040.44846	-0.4712	-0.00024561	0.45339	0.00023632	-0.017817	-9.2866E-06	521.2317362551878	86.4	0.86801	87.133	86.794	87.662	0.73301					33	16	3	0	0	0	0.71245	1	32771	32771		6.7232	0	1	1788900			56061	8844	40787	41115	54760	54760					-0.07014479179019872
TVDEHFFQY	9	Unmodified	_TVDEHFFQY_					0	0	0			REV__FCRL5|p.R785Q|1|0.67|ENSG00000143297|chr1:157521178-157521178|C/T|missense_variant	REV__FCRL5|p.R785Q|1|0.67|ENSG00000143297|chr1:157521178-157521178|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	396.5791320800781	3	395.845223	1184.51384	-0.48283	-0.00019113	-0.47041	-0.00018621	-0.95325	-0.00037734	395.84516580005294	58.743	0.65967	59.49	59.134	59.793	0.74714					18	12	2	0	0	0	0.80332	1	22249	22249		0.96228	0.0979	1	1129400	+		56062	26629	40788	41116	54761	54761					-0.0710374166164911
TVDEHFFQY	9	Unmodified	_TVDEHFFQY_					0	0	0			REV__FCRL5|p.R785Q|1|0.67|ENSG00000143297|chr1:157521178-157521178|C/T|missense_variant	REV__FCRL5|p.R785Q|1|0.67|ENSG00000143297|chr1:157521178-157521178|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	395.845223	1184.51384	-0.031525	-1.2479E-05	-0.37289	-0.00014761	-0.40441	-0.00016008	395.84515057082575	59.553	0.55799	59.553	59.194	59.752	0	0.031489	6.8915E-05	NaN	0.96228	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1689700	+		56063	26629	40788	41116							-0.0710374166164911
TVDEKYKYVQM	11	Unmodified	_TVDEKYKYVQM_					0	0	0			REV__ENSG00000198173|ENST00000358047|FAM47C	REV__ENSG00000198173|ENST00000358047|FAM47C	MULTI-MSMS	A375_MHC_IP_R1	1	468.6268310546875	3	468.567361	1402.68025	-0.48154	-0.00022564	-1.2485	-0.00058502	-1.7301	-0.00081066	468.56687436161945	46.8	0.35586	46.8	46.596	46.952	0					9	6	2	0	0	0	0.72909	1	16437	16437		9.7643	0	1	1239200	+		56064	22350	40789	41117	54762	54762					-0.00498056548144632
TVDENHSCDY	10	Unmodified	_TVDENHSCDY_					0	0	0			REV__CD163L1|p.H242Y|1|0.14|ENSG00000177675|chr12:7432458-7432458|G/A|missense_variant	REV__CD163L1|p.H242Y|1|0.14|ENSG00000177675|chr12:7432458-7432458|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	591.2100219726562	2	591.722035	1181.42952	-1.3716	-0.00081163	0.18003	0.00010653	-1.1916	-0.0007051	591.7220375983671	29.005	0.39646	29.704	29.534	29.93	0.69872					10	7	2	0	0	0	0.92957	1	10019	10019		10.074	8.7444	1	5676100	+		56065	15608	40790	41118	54763	54763					-0.15394060540734245
TVDEYKIGQLY	11	Unmodified	_TVDEYKIGQLY_					0	0	0		nc|ENSG00000154217|Q9UKF7-2|PITPNC1;ENSG00000154217|ENST00000581322|PITPNC1	nc|ENSG00000154217|Q9UKF7-2|PITPNC1	nc|ENSG00000154217|Q9UKF7-2|PITPNC1	MULTI-MSMS	A375_MHC_IP_R2	2	665.240478515625	2	664.840268	1327.66598	-0.78298	-0.00052056	-0.29211	-0.00019421	-1.0751	-0.00071476	664.8402852103003	73.508	0.56107	74.244	73.99	74.551	0.73541					21	10	3	0	0	0	0.0015281	2	27882	27882;27905		97.741	57.502	1	3238400			56066	6069	40791	41119	54764;54765	54764					0.01525614295246669
TVDEYYFRYLI	11	Unmodified	_TVDEYYFRYLI_					0	0	0			REV__FCRL3|p.H419Y|2|0.22|ENSG00000160856|chr1:157695485-157695485|G/A|missense_variant	REV__FCRL3|p.H419Y|2|0.22|ENSG00000160856|chr1:157695485-157695485|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	741.3865966796875	2	741.369192	1480.72383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.72	1	124.05	123.55	124.55	0.32969								0	0	0	0.16249	1	47647	47647		5.7319	0.83484	1		+		56067	26628	40792	41120	54766	54766					0.002698762206819083
TVDFRSLKF	9	Unmodified	_TVDFRSLKF_					0	0	0			REV__tr|U7SZG0|U7SZG0_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00737PE=4SV=1	REV__tr|U7SZG0|U7SZG0_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00737PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	556.206298828125	2	556.808574	1111.60259	-1.0859	-0.00060462	0.27728	0.00015439	-0.80858	-0.00045023	557.3102106588966	54.065	0.50961	54.816	54.609	55.118	0.75105					14	9	2	0	0	0	0.75466	1	20485	20485		4.3292	0	1	1767700	+		56068	28645	40793	41121	54767	54767					0.051257183686630015
TVDFTADKY	9	Unmodified	_TVDFTADKY_					0	0	0		ENSG00000164338|ENST00000296792|UTP15;nc|ENSG00000164338|Q8TED0-3|UTP15;UTP15|p.H136Y|1|0.38|ENSG00000164338|chr5:73569534-73569534|C/T|missense_variant	ENSG00000164338|ENST00000296792|UTP15	ENSG00000164338|ENST00000296792|UTP15	MULTI-MSMS	A375_MHC_IP_R1	1	530.695556640625	2	530.253297	1058.49204	-0.51619	-0.00027371	0.49347	0.00026166	-0.022719	-1.2047E-05	530.2534920912238	47.467	0.91103	47.467	47.211	48.122	0					53	17	5	0	0	0	0.13728	2	16797	16797;16852		43.982	19.961	1	18560000			56069	6829	40794	41122	54768;54769	54768					-0.03486546410226765
TVDFTADKY	9	Unmodified	_TVDFTADKY_					0	0	0		ENSG00000164338|ENST00000296792|UTP15;nc|ENSG00000164338|Q8TED0-3|UTP15;UTP15|p.H136Y|1|0.38|ENSG00000164338|chr5:73569534-73569534|C/T|missense_variant	ENSG00000164338|ENST00000296792|UTP15	ENSG00000164338|ENST00000296792|UTP15	MULTI-MSMS	A375_MHC_IP_R2	2	531.2129516601562	2	530.253297	1058.49204	-0.41661	-0.00022091	0.41223	0.00021859	-0.0043852	-2.3253E-06	530.2534147469376	46.827	0.96684	47.588	47.258	48.225	0.76128					43	18	3	0	0	0	0.14858	2	17570	17570;17712		41.956	12.345	1	21014000			56070	6829	40794	41122	54770;54771	54770					-0.03486546410226765
TVDFTEWE	8	Unmodified	_TVDFTEWE_					0	0	0			REV__ENSG00000163217|ENST00000295379|BMP10	REV__ENSG00000163217|ENST00000295379|BMP10	MULTI-SECPEP	A375_MHC_IP_R2	2	514.1240844726562	2	513.724372	1025.43419	-0.85621	-0.00043986	0.17484	8.9822E-05	-0.68137	-0.00035003	513.7244226311577	40.505	0.86462	41.28	40.98	41.845	0.77451					42	16	4	0	0	0	0.92636	1	14955	14955		16.942	0	1	14134000	+		56071	20343	40795	41123	54772	54772					-0.0775080833566335
TVDFTEWE	8	Unmodified	_TVDFTEWE_					0	0	0			REV__ENSG00000163217|ENST00000295379|BMP10	REV__ENSG00000163217|ENST00000295379|BMP10	MULTI-MATCH	A375_MHC_IP_R1	1		2	513.724372	1025.43419	-0.74838	-0.00038446	0.25341	0.00013018	-0.49497	-0.00025428	513.7244555227214	41.158	0.91296	41.158	40.813	41.725	0	-0.06063	5.3486E-05	NaN	16.942	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17348000	+		56072	20343	40795	41123							-0.0775080833566335
TVDGEFLHY	9	Unmodified	_TVDGEFLHY_					0	0	0		ENSG00000132429|ENST00000254765|POPDC3	ENSG00000132429|ENST00000254765|POPDC3	ENSG00000132429|ENST00000254765|POPDC3	MULTI-SECPEP	A375_MHC_IP_R1	1	541.153076171875	2	540.753464	1079.49238	-0.22692	-0.00012271	-0.27335	-0.00014781	-0.50026	-0.00027052	540.7533675399686	69.205	0.509	69.205	68.969	69.478	0					15	9	3	0	0	0	0.40041	1	25141	25141		38.151	20.016	1	1743000			56073	4406	40796	41124	54773	54773					-0.044191266903681026
TVDGEQVEY	9	Unmodified	_TVDGEQVEY_					0	0	0		nc|ENSG00000063176|Q9NRA0-3|SPHK2;nc|ENSG00000063176|Q9NRA0-4|SPHK2;nc|ENSG00000063176|Q9NRA0-2|SPHK2;ENSG00000063176|ENST00000245222|SPHK2;nc|ENSG00000063176|Q9NRA0-5|SPHK2	nc|ENSG00000063176|Q9NRA0-3|SPHK2	nc|ENSG00000063176|Q9NRA0-3|SPHK2	MULTI-MSMS	A375_MHC_IP_R1	1	520.6328125	2	520.232561	1038.45057	-0.2901	-0.00015092	-1.8736	-0.00097473	-2.1637	-0.0011257	520.2324581002368	42.965	0.71268	42.965	42.638	43.351	0					22	13	2	0	0	0	0.41409	1	14989	14989		24.021	2.2739	1	2205400			56074	14470	40797	41125	54774	54774					-0.06711727169545156
TVDGSTFSVV	10	Unmodified	_TVDGSTFSVV_					0	0	0		ROBO1|p.N1089Sfs*2|1|0.06|ENSG00000169855|chr3:78635881-78635882|-/ATGA|frameshift_variant;ROBO1|p.N1088Sfs*50|1|0.03|ENSG00000169855|chr3:78635883-78635884|-/AGTGGCAGTGTATTGTGAAAGC|frameshift_variant;nc|ENSG00000169855|Q9Y6N7-6|ROBO1;nc|ENSG00000169855|Q9Y6N7-5|ROBO1;nc|ENSG00000169855|Q9Y6N7-4|ROBO1;nc|ENSG00000169855|Q9Y6N7-3|ROBO1;ENSG00000169855|ENST00000464233|ROBO1;nc|ENSG00000169855|Q9Y6N7-2|ROBO1	ROBO1|p.N1089Sfs*2|1|0.06|ENSG00000169855|chr3:78635881-78635882|-/ATGA|frameshift_variant	ROBO1|p.N1089Sfs*2|1|0.06|ENSG00000169855|chr3:78635881-78635882|-/ATGA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	506.99029541015625	2	506.253297	1010.49204	-1.0931	-0.00055338	-2.0843	-0.0010552	-3.1774	-0.0016086	506.2520748203241	38.611	0.30487	39.385	39.2	39.504	0.77451					8	5	2	0	0	0	0.85226	1	14266	14266		10.074	0	1	1038600			56075	7442	40798	41126	54775	54775					-0.012785464102194055
TVDIHKEKV	9	Unmodified	_TVDIHKEKV_					0	0	0		nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1;ENST00000473481.1_1_10:27065936-27112150:-|nuORF;ENST00000376135.5_1_2:204193204-204247972:+|nuORF;ABI2|p.P215Wfs*9|1|0.09|ENSG00000138443|chr2:203394762-203394780|TACCTAGCCCAACCCGTAA/-|frameshift_variant;nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2	nc|ENSG00000136754|Q8IZP0-10|ABI1;ENST00000376135.5_1_2:204193204-204247972:+|nuORF	nc|ENSG00000136754|Q8IZP0-10|ABI1	MULTI-SECPEP	A375_MHC_IP_R1	1	357.4490966796875	3	356.873113	1067.59751	0.17141	6.1173E-05	-0.38686	-0.00013806	-0.21545	-7.6889E-05	356.8730469818582	20.664	0.76486	20.664	20.283	21.048	0					19	14	2	0	0	0	0.69504	1	5329	5329		4.897	0.49086	1	1049900			56076	4814;21	40799	41127	54776	54776					0.06641414506043475
TVDLEQRRHLE	11	Unmodified	_TVDLEQRRHLE_					0	0	0		ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	MSMS	A375_MHC_IP_R2	2	698.2870483398438	2	698.370589	1394.72663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.046	1	96.796	96.296	97.296	0.75045								0	0	0	0.16249	1	36474	36474		5.7319	0	1				56077	9360	40800	41128	54777	54777					0.04505144398194716
TVDLKVNEY	9	Unmodified	_TVDLKVNEY_					0	0	0		nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28;nc|ENSG00000214944|Q8N1W1-5|ARHGEF28;ENST00000510312.6_1_5:73178320-73193923:+|nuORF	nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	MSMS	A375_MHC_IP_R2	2	540.6787719726562	2	540.782222	1079.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.851	1	57.601	57.101	58.101	0.75015								0	0	0	0.14169	1	21490	21490		29.082	1.4528	1				56078	9632	40801	41129	54778	54778					0.013297155152031337
TVDLSYYQF	9	Unmodified	_TVDLSYYQF_					0	0	0			REV__UGT2B4|p.H489Y|1|0.52|ENSG00000156096|chr4:69480756-69480756|G/A|missense_variant	REV__UGT2B4|p.H489Y|1|0.52|ENSG00000156096|chr4:69480756-69480756|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	568.216552734375	2	568.268947	1134.52334	-0.8236	-0.00046803	-3.0211	-0.0017168	-3.8447	-0.0021848	568.769684448885	52.632	0.15224	53.384	53.285	53.437	0.75225					4	2	2	0	0	0	0.55818	1	19808	19808		16.942	2.104	1	793480	+		56079	28946	40802	41130	54779	54779					-0.038539733761581374
TVDLSYYQF	9	Unmodified	_TVDLSYYQF_					0	0	0			REV__UGT2B4|p.H489Y|1|0.52|ENSG00000156096|chr4:69480756-69480756|G/A|missense_variant	REV__UGT2B4|p.H489Y|1|0.52|ENSG00000156096|chr4:69480756-69480756|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	568.268947	1134.52334	-0.37771	-0.00021464	-2.7954	-0.0015885	-3.1731	-0.0018032	568.2661873404039	53.418	0.30496	53.418	53.148	53.453	0	0.016939	0.00010301	NaN	16.942	8	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1599200	+		56080	28946	40802	41130							-0.038539733761581374
TVDLSYYQF	9	Unmodified	_TVDLSYYQF_					0	0	0			REV__UGT2B4|p.H489Y|1|0.52|ENSG00000156096|chr4:69480756-69480756|G/A|missense_variant	REV__UGT2B4|p.H489Y|1|0.52|ENSG00000156096|chr4:69480756-69480756|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	568.268947	1134.52334	-0.8236	-0.00046803	-3.0211	-0.0017168	-3.8447	-0.0021848	568.769684448885	52.632	0.15224	53.384	53.285	53.437	0.75225	-0.016939	-0.00015343	NaN	16.942	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	793480	+		56081	28946	40802	41130							-0.038539733761581374
TVDPASLWEY	10	Unmodified	_TVDPASLWEY_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	MULTI-MSMS	A375_MHC_IP_R1	1	591.1796264648438	2	590.779679	1179.5448	-0.80313	-0.00047447	0.35291	0.00020849	-0.45022	-0.00026598	590.7798376459359	122.31	0.76009	122.31	121.82	122.58	0					33	14	4	0	0	0	0.0062039	2	45427	45330;45427		103.35	72.717	1	63707000			56082	1614	40803	41131	54780;54781	54781					-0.03778588347427103
TVDPASLWEY	10	Unmodified	_TVDPASLWEY_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	MULTI-SECPEP	A375_MHC_IP_R1	1	1179.9847412109375	1	1180.55208	1179.5448	-0.48652	-0.00057436	0.35627	0.00042059	-0.13026	-0.00015378	1180.5523695874788	122.2	0.65897	122.2	121.87	122.53	0					31	12	3	0	0	0	0.027341	1	45594	45594		92.653	50.814	1	97294000			56083	1614	40803	41131	54782	54782					-0.03778588347427103
TVDPASLWEY	10	Unmodified	_TVDPASLWEY_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	MULTI-MSMS	A375_MHC_IP_R2	2	591.31591796875	2	590.779679	1179.5448	-0.57924	-0.0003422	0.1542	9.1096E-05	-0.42504	-0.00025111	590.7796691775211	121.49	1.0654	121.94	121.57	122.64	0.44488					47	20	3	0	0	0	0.0038543	3	46589	46512;46589;46792		122.18	84.205	1	72704000			56084	1614	40803	41131	54783;54784;54785	54784					-0.03778588347427103
TVDPASLWEY	10	Unmodified	_TVDPASLWEY_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	MULTI-MSMS	A375_MHC_IP_R2	2	1182.3836669921875	1	1180.55208	1179.5448	0.16034	0.00018929	-0.49527	-0.00058469	-0.33493	-0.0003954	1180.5514703347412	121.56	0.91264	122	121.67	122.58	0.44488					40	17	3	0	0	0	0.15514	1	46560	46560		53.833	29.812	1	124360000			56085	1614	40803	41131	54786	54786					-0.03778588347427103
TVDPTTGHV	9	Unmodified	_TVDPTTGHV_					0	0	0		ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	A375_MHC_IP_R2	2	464.1502685546875	2	463.732532	925.45051	-0.59322	-0.00027509	0.17977	8.3363E-05	-0.41345	-0.00019173	463.73265327547756	30.577	0.30305	31.296	31.114	31.417	0.71857					8	5	2	0	0	0	0.47368	1	10709	10709		26.884	0	1	856650			56086	7061	40804	41132	54787	54787					-0.015196823788983238
TVDPVWEF	8	Unmodified	_TVDPVWEF_					0	0	0			REV__ENST00000609106.5_1_7:124569776-124569827:-|nuORF	REV__ENST00000609106.5_1_7:124569776-124569827:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	496.6861267089844	2	496.739825	991.465098	-0.21311	-0.00010586	1.3249	0.00065812	1.1118	0.00055226	496.7402341792702	78.934	0.30484	78.934	78.756	79.061	0					7	5	2	0	0	0	0.77123	1	28818	28818		14.582	2.9414	1	460000	+		56087	26563	40805	41133	54788	54788					-0.030976102307590736
TVDQLFCCW	9	Unmodified	_TVDQLFCCW_					0	0	0		ENST00000425713.1_1_13:19700631-19713554:+|nuORF	ENST00000425713.1_1_13:19700631-19713554:+|nuORF	ENST00000425713.1_1_13:19700631-19713554:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	557.7423095703125	2	557.738445	1113.46234	-0.69088	-0.00038533	1.2163	0.00067835	0.52538	0.00029302	557.7392986907738	104.19	0.50816	104.95	104.7	105.21	0.76308					21	9	3	0	0	0	0.64808	1	39354	39354		11.64	1.5664	1	2171400			56088	11792	40806	41134	54789	54789					-0.08985524951594925
TVDQMKRGY	9	Unmodified	_TVDQMKRGY_					0	0	0		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6694946289062	2	549.274041	1096.53353	-0.84965	-0.00046669	-0.068544	-3.7649E-05	-0.91819	-0.00050434	549.7762357003079	32.776	0.66238	33.513	33.213	33.876	0.73691					25	12	3	0	0	0	0.77834	1	11691	11691		4.756	0.42677	1	8485800			56089	5850	40807	41135	54790	54790					-0.01087688922552843
TVDQQDHYREC	11	Unmodified	_TVDQQDHYREC_					0	0	0			REV__nc|ENSG00000143603|Q9UGI6-3|KCNN3	REV__nc|ENSG00000143603|Q9UGI6-3|KCNN3	MSMS	A375_MHC_IP_R2	2	697.0186157226562	2	697.29369	1392.57283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.842	1	98.597	98.097	99.097	0.75586								0	0	0	0.16307	1	37130	37130		2.7352	1.0826	1		+		56090	16755	40808	41136	54791	54791					-0.10775633429648224
TVDRAAYL	8	Unmodified	_TVDRAAYL_					0	0	0			REV__ENST00000476284.1_1_22:50964673-50968379:-|nuORF	REV__ENST00000476284.1_1_22:50964673-50968379:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	453.993896484375	2	454.745442	907.476331	-0.33337	-0.0001516	0.041493	1.8869E-05	-0.29188	-0.00013273	454.7453470066289	48.907	0.30722	49.664	49.434	49.741	0.75737					8	5	2	0	0	0	0.95423	1	18384	18384		12.532	0.89125	1	1072300	+		56091	16287	40809	41137	54792	54792					0.01889211863363016
TVDRAAYL	8	Unmodified	_TVDRAAYL_					0	0	0			REV__ENST00000476284.1_1_22:50964673-50968379:-|nuORF	REV__ENST00000476284.1_1_22:50964673-50968379:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	454.745442	907.476331	0.0095989	4.3651E-06	0.34187	0.00015547	0.35147	0.00015983	454.7454258507573	49.837	0.61095	49.837	49.387	49.998	0	0.08613	0.00010969	NaN	12.532	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	932740	+		56092	16287	40809	41137							0.01889211863363016
TVDSIESFV	9	Unmodified	_TVDSIESFV_					0	0	0		ENSG00000122692|ENST00000397149|SMU1	ENSG00000122692|ENST00000397149|SMU1	ENSG00000122692|ENST00000397149|SMU1	MSMS	A375_MHC_IP_R2	2	498.7166442871094	2	498.747847	995.481142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.203	1	93.942	93.442	94.442	0.73902								0	0	0	0.12568	1	35435	35435		34.102	3.8776	1				56093	3800	40810	41138	54793	54793					-0.016779487845155927
TVDSMVESE	9	Unmodified	_TVDSMVESE_					0	0	0			REV__ENSG00000123572|ENST00000243300|NRK	REV__ENSG00000123572|ENST00000243300|NRK	MSMS	A375_MHC_IP_R1	1	498.6739807128906	2	498.713147	995.411742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.067	1	59.067	58.567	59.567	0								0	0	0	0.15486	1	21236	21236		11.64	0	1		+		56094	18249	40811	41139	54794	54794					-0.0861477579557004
TVDSYVISY	9	Unmodified	_TVDSYVISY_					0	0	0		nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC	nc|ENSG00000041982|P24821-6|TNC	nc|ENSG00000041982|P24821-6|TNC	MULTI-SECPEP	A375_MHC_IP_R1	1	523.7099609375	2	523.755672	1045.49679	-0.55539	-0.00029089	0.071368	3.7379E-05	-0.48402	-0.00025351	523.7556303736968	83.617	0.60848	83.617	83.329	83.937	0					22	11	3	0	0	0	0.55359	1	30581	30581		28.487	15.955	1	2878700			56095	1171	40812	41140	54795	54795					-0.024136622674632235
TVDSYVISY	9	Unmodified	_TVDSYVISY_					0	0	0		nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC	nc|ENSG00000041982|P24821-6|TNC	nc|ENSG00000041982|P24821-6|TNC	MULTI-SECPEP	A375_MHC_IP_R2	2	523.8844604492188	2	523.755672	1045.49679	-0.52451	-0.00027472	-0.47021	-0.00024627	-0.99472	-0.00052099	523.7554862571058	83.059	0.70793	83.798	83.444	84.152	0.73962					30	13	3	0	0	0	0.3607	1	31527	31527		42.095	9.9776	1	3959600			56096	1171	40812	41140	54796	54796					-0.024136622674632235
TVDTTMYEMQA	11	Unmodified	_TVDTTMYEMQA_					0	0	0		ENSG00000179919|ENST00000326258|OR10A7	ENSG00000179919|ENST00000326258|OR10A7	ENSG00000179919|ENST00000326258|OR10A7	MULTI-SECPEP	A375_MHC_IP_R2	2	430.1372985839844	3	430.51779	1288.53154	-0.47187	-0.00020315	0.052503	2.2603E-05	-0.41937	-0.00018055	430.51761819494254	41.197	0.25372	41.972	41.794	42.047	0.77451					6	4	2	0	0	0	0.99681	1	15266	15266		1.1098	0	1	1559000			56097	8265	40813	41141	54797	54797					-0.10118530513318547
TVDVSNQPWEA	11	Unmodified	_TVDVSNQPWEA_					0	0	0			REV__ENST00000564180.1_1_16:68877520-68901131:+|nuORF	REV__ENST00000564180.1_1_16:68877520-68901131:+|nuORF	MSMS	A375_MHC_IP_R1	1	623.306396484375	2	623.290942	1244.56733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.721	1	99.721	99.221	100.22	0								0	0	0	0.16191	1	36637	36637		8.7454	0.58988	1		+		56098	17248	40814	41142	54798	54798					-0.045169889497856275
TVDYEEYPY	9	Unmodified	_TVDYEEYPY_					0	0	0			REV__ENSG00000204021|ENST00000404190|LIPK	REV__ENSG00000204021|ENST00000404190|LIPK	MULTI-MSMS	A375_MHC_IP_R2	2	589.891845703125	2	589.748044	1177.48154	-0.56017	-0.00033036	0.71776	0.0004233	0.15759	9.294E-05	589.748120049566	98.364	0.25506	99.124	98.895	99.15	0.75977					7	4	2	0	0	0	0.6898	1	37317	37317		7.9102	0.62092	1	1042000	+		56099	22484	40815	41143	54799	54799					-0.1001057385533386
TVEAAITAV	9	Unmodified	_TVEAAITAV_					0	0	0			REV__nc|ENSG00000160688|Q8NFF5-4|FLAD1	REV__nc|ENSG00000160688|Q8NFF5-4|FLAD1	MULTI-MSMS	A375_MHC_IP_R2	2	876.1546630859375	1	874.488024	873.480748	-0.50714	-0.00044349	-0.5899	-0.00051586	-1.097	-0.00095935	874.4874308818138	79.888	0.6611	80.632	80.35	81.011	0.74474					29	12	3	0	0	0	0.12592	1	30248	30248		46.021	0	1	24599000	+		56100	20179	40816	41144	54800	54800					0.03894676286279264
TVEAPPHDA	9	Unmodified	_TVEAPPHDA_					0	0	0			REV__LIMA1|p.A544Dfs*11|1|0.27|ENSG00000050405|chr12:50177700-50177713|CCCTTCCTCCAAGG/-|frameshift_variant	REV__LIMA1|p.A544Dfs*11|1|0.27|ENSG00000050405|chr12:50177700-50177713|CCCTTCCTCCAAGG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	469.1241455078125	2	468.724707	935.43486	-0.29841	-0.00013987	-2.2041	-0.0010331	-2.5025	-0.001173	468.7236466440695	128.76	0.25484	128.76	128.58	128.84	0					7	4	2	0	0	0	0.69674	1	49480	49480		7.2892	0.93513	1	12876000	+		56101	16387	40817	41145	54801	54801					-0.03543968895951366
TVEAPPHDA	9	Unmodified	_TVEAPPHDA_					0	0	0			REV__LIMA1|p.A544Dfs*11|1|0.27|ENSG00000050405|chr12:50177700-50177713|CCCTTCCTCCAAGG/-|frameshift_variant	REV__LIMA1|p.A544Dfs*11|1|0.27|ENSG00000050405|chr12:50177700-50177713|CCCTTCCTCCAAGG/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	468.724707	935.43486	-0.29841	-0.00013987	-2.2041	-0.0010331	-2.5025	-0.001173	468.7236466440695	128.76	0.25484	128.76	128.58	128.84	0	0.091314	0.0010027	NaN	7.2892	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12876000	+		56102	16387	40817	41145							-0.03543968895951366
TVEDELHLIF	10	Unmodified	_TVEDELHLIF_					0	0	0		nc|ENSG00000059758|Q00537-2|CDK17;ENSG00000059758|ENST00000261211|CDK17;ENST00000549899.1_1_12:96679783-96680514:-|nuORF;ENST00000550971.5_1_12:96677414-96688846:-|nuORF	nc|ENSG00000059758|Q00537-2|CDK17	nc|ENSG00000059758|Q00537-2|CDK17	MULTI-SECPEP	A375_MHC_IP_R1	1	406.25933837890625	3	405.880044	1214.6183	-0.41793	-0.00016963	-3.5341	-0.0014344	-3.952	-0.001604	405.87882390055523	34.468	0.2038	34.468	34.353	34.557	0					5	3	2	0	0	0	0.92603	1	11319	11319		8.9762	0	1	814210			56103	1305	40818	41146	54802	54802					0.019579600950464737
TVEDFCMKI	9	Unmodified	_TVEDFCMKI_					0	0	0		ENST00000469673.1_1_22:31822577-31829954:+|nuORF;ENSG00000185721|ENST00000331457|DRG1	ENST00000469673.1_1_22:31822577-31829954:+|nuORF	ENST00000469673.1_1_22:31822577-31829954:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	361.97283935546875	3	362.505044	1084.4933	-0.095833	-3.474E-05	-0.0038394	-1.3918E-06	-0.099672	-3.6132E-05	362.83925327328745	25.981	0.55765	25.981	25.664	26.221	0					14	10	3	0	0	0	0.75466	1	7743	7743		2.4985	0	1	2573000			56104	8686	40819	41147	54803	54803					-0.045563716373180796
TVEDLVVGIY	10	Unmodified	_TVEDLVVGIY_					0	0	0		nc|ENSG00000143194|Q96JY0-2|MAEL;ENSG00000143194|ENST00000367872|MAEL	nc|ENSG00000143194|Q96JY0-2|MAEL	nc|ENSG00000143194|Q96JY0-2|MAEL	MULTI-MSMS	A375_MHC_IP_R1	1	553.693359375	2	554.300247	1106.58594	-0.71437	-0.00039598	-0.44557	-0.00024698	-1.1599	-0.00064295	554.2997518161098	80.622	1.0148	80.622	80.136	81.151	0					38	19	3	0	0	0	0.70146	1	29350	29350		11.64	3.047	1	10273000			56105	5358	40820	41148	54804	54804					0.03691172692060718
TVEEFCRTW	9	Unmodified	_TVEEFCRTW_					0	0	0		ENSG00000103381|ENST00000381774|CPPED1	ENSG00000103381|ENST00000381774|CPPED1	ENSG00000103381|ENST00000381774|CPPED1	MULTI-MSMS	A375_MHC_IP_R2	2	585.8604125976562	2	585.766049	1169.51754	-0.43338	-0.00025386	-0.014641	-8.5763E-06	-0.44803	-0.00026244	585.7661367703713	91.955	1.1137	92.694	92.329	93.443	0.73901					52	21	4	0	0	0	0.53367	1	35127	35127		18.146	1.9972	1	24632000			56106	2449	40821	41149	54805	54805					-0.06043395159463216
TVEERESAW	9	Unmodified	_TVEERESAW_					0	0	0			REV__nc|ENSG00000283703|P0DP72|VSIG10L2	REV__nc|ENSG00000283703|P0DP72|VSIG10L2	MULTI-SECPEP	A375_MHC_IP_R1	1	552.9666748046875	2	553.759278	1105.504	-0.3142	-0.00017399	2.756	0.0015261	2.4418	0.0013522	553.7605946528695	109.08	0.50717	109.08	108.81	109.32	0					12	9	2	0	0	0	0.73363	1	40016	40016		6.7232	0.51738	1	751550	+		56107	22998	40822	41150	54806	54806					-0.04452929667036187
TVEERESAW	9	Unmodified	_TVEERESAW_					0	0	0			REV__nc|ENSG00000283703|P0DP72|VSIG10L2	REV__nc|ENSG00000283703|P0DP72|VSIG10L2	MULTI-MATCH	A375_MHC_IP_R2	2		2	553.759278	1105.504	-0.75828	-0.00041991	3.8071	0.0021082	3.0488	0.0016883	553.7615107926619	108.31	0.40761	109.06	108.92	109.32	0.75436	-0.0074682	0.00018605	NaN	6.7232	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	580660	+		56108	22998	40822	41150							-0.04452929667036187
TVEETGGDSW	10	Unmodified	_TVEETGGDSW_					0	0	0		ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11	ENSG00000086200|ENST00000325324|IPO11	ENSG00000086200|ENST00000325324|IPO11	MULTI-MSMS	A375_MHC_IP_R1	1	541.6885375976562	2	540.727643	1079.44073	-0.97682	-0.00052819	0.6579	0.00035574	-0.31892	-0.00017245	540.7277662282336	38.178	0.71487	38.178	37.862	38.577	0					28	13	3	0	0	0	0.6806	1	12952	12952		14.838	0	1	6962900			56109	1831	40823	41151	54807	54807					-0.09580915174956317
TVEHIGGPPY	10	Unmodified	_TVEHIGGPPY_					0	0	0			REV__CON__Q6IFZ6	REV__CON__Q6IFZ6	MULTI-MSMS	A375_MHC_IP_R2	2	535.6701049804688	2	535.269281	1068.52401	-1.2219	-0.00065405	-2.0092	-0.0010754	-3.2311	-0.0017295	535.2680665139403	56.774	0.91572	57.524	56.847	57.763	0.75014					39	17	3	0	0	0	0.60556	1	21511	21511		20.454	3.3407	1	4374800	+	+	56110	15892	40824	41152	54808	54808					-0.007511339364327796
TVEKLNQNL	9	Unmodified	_TVEKLNQNL_					0	0	0			REV__ENST00000320241.4_1_16:86614428-86614788:+|nuORF	REV__ENST00000320241.4_1_16:86614428-86614788:+|nuORF	MSMS	A375_MHC_IP_R2	2	529.3075561523438	2	529.795663	1057.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.148	1	92.887	92.387	93.387	0.73902								0	0	0	0.15283	1	35046	35046		16.942	0	1		+		56111	23560	40825	41153	54809	54809					0.05028824126384279
TVELRLSR	8	Unmodified	_TVELRLSR_					0	0	0			REV__nc|ENSG00000164989|Q6TFL3-3|CCDC171	REV__nc|ENSG00000164989|Q6TFL3-3|CCDC171	MSMS	A375_MHC_IP_R1	1	487.35870361328125	2	487.293091	972.571629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.71	1	135.71	135.21	136.21	0								0	0	0	0.16876	1	52302	52302		8.5933	0	1		+		56112	20538	40826	41154	54810	54810					0.08424565054428967
TVENEEPY	8	Unmodified	_TVENEEPY_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	A375_MHC_IP_R1	1	490.63494873046875	2	490.714005	979.413456	-0.24646	-0.00012094	-0.103	-5.0545E-05	-0.34946	-0.00017149	490.7138376983122	33.757	0.35122	33.757	33.547	33.898	0					11	6	2	0	0	0	0.51581	1	11073	11073		48.346	19.859	1	1633000	+		56113	18422	40827	41155	54811	54811					-0.07707398715319869
TVENEEPY	8	Unmodified	_TVENEEPY_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	A375_MHC_IP_R2	2	491.1136779785156	2	490.714005	979.413456	-0.74039	-0.00036332	0.37144	0.00018227	-0.36895	-0.00018105	490.71415212947164	33.149	0.45909	33.901	33.686	34.146	0.75225					13	8	2	0	0	0	0.73563	1	11900	11900		36.044	24.404	1	2066600	+		56114	18422	40827	41155	54812	54812					-0.07707398715319869
TVENEEPY	8	Unmodified	_TVENEEPY_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	490.714005	979.413456	-0.24646	-0.00012094	-0.103	-5.0545E-05	-0.34946	-0.00017149	490.7138376983122	33.757	0.35122	33.757	33.547	33.898	0	-0.071922	-0.00025848	NaN	48.346	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1633000	+		56115	18422	40827	41155							-0.07707398715319869
TVENKLIRL	9	Unmodified	_TVENKLIRL_					0	0	0		ENSG00000187730|ENST00000378585|GABRD	ENSG00000187730|ENST00000378585|GABRD	ENSG00000187730|ENST00000378585|GABRD	MULTI-SECPEP	A375_MHC_IP_R2	2	362.9607238769531	3	362.560758	1084.66044	0.071623	2.5968E-05	-0.25756	-9.3382E-05	-0.18594	-6.7414E-05	362.5606847135606	47.094	0.40771	47.855	47.563	47.97	0.76127					9	7	2	0	0	0	0.71541	1	17682	17682		4.5289	0	1	1718000			56116	8853	40828	41156	54813	54813					0.12149980294066154
TVENKLIRL	9	Unmodified	_TVENKLIRL_					0	0	0		ENSG00000187730|ENST00000378585|GABRD	ENSG00000187730|ENST00000378585|GABRD	ENSG00000187730|ENST00000378585|GABRD	MULTI-MATCH	A375_MHC_IP_R1	1		3	362.560758	1084.66044	0.46262	0.00016773	-0.37622	-0.0001364	0.086402	3.1326E-05	362.5605565646997	48.116	0.3046	48.116	47.97	48.274	0	0.13079	-8.2693E-05	NaN	4.5289	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1728600			56117	8853	40828	41156							0.12149980294066154
TVENLEKYV	9	Unmodified	_TVENLEKYV_					0	0	0		ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2;ENST00000470228.5_1_10:104858657-104865497:-|nuORF	ENSG00000076685|ENST00000404739|NT5C2	ENSG00000076685|ENST00000404739|NT5C2	MULTI-SECPEP	A375_MHC_IP_R2	2	547.6273803710938	2	547.790047	1093.56554	-0.66395	-0.0003637	-1.2067	-0.00066102	-1.8707	-0.0010247	548.2914261316197	87.011	0.55666	87.744	87.306	87.863	0.733					14	10	2	0	0	0	0.76187	1	32999	32999		3.9444	0	1	5862500			56118	1638	40829	41157	54814	54814					0.022500020322468117
TVENNIDVSF	10	Unmodified	_TVENNIDVSF_					0	0	0			REV__nc|ENSG00000123473|Q15468|STIL	REV__nc|ENSG00000123473|Q15468|STIL	MULTI-MSMS	A375_MHC_IP_R2	2	569.236572265625	2	569.274761	1136.53497	-0.43996	-0.00025046	-0.0091773	-5.2244E-06	-0.44914	-0.00025568	569.2747236221456	44.919	1.1156	45.688	45.441	46.556	0.76909					40	21	3	0	0	0	0.69306	1	17125	17125		13.906	0	1	9670400	+		56119	18245	40830	41158	54815	54815					-0.027837763527941206
TVEPSTSLIF	10	Unmodified	_TVEPSTSLIF_					0	0	0			REV__nc|ENSG00000129493|Q86XA9|HEATR5A	REV__nc|ENSG00000129493|Q86XA9|HEATR5A	MULTI-SECPEP	A375_MHC_IP_R1	1	547.692626953125	2	547.292422	1092.57029	-0.27517	-0.0001506	0.27629	0.00015121	0.0011263	6.1643E-07	547.2924803239719	108.41	0.86206	108.41	108.05	108.92	0					45	16	4	0	0	0	0.19481	1	39739	39739		58.679	14.821	1	11885000	+		56120	18494	40831	41159	54816	54816					0.0277088617501704
TVEPVPSDHV	10	Unmodified	_TVEPVPSDHV_					0	0	0			REV__nc|ENSG00000114650|Q12770-4|SCAP	REV__nc|ENSG00000114650|Q12770-4|SCAP	MULTI-SECPEP	A375_MHC_IP_R1	1	539.6851806640625	2	540.272021	1078.52949	-0.78026	-0.00042155	0.14844	8.02E-05	-0.63182	-0.00034135	540.2721609245042	65.785	0.45786	65.785	65.514	65.972	0					13	8	2	0	0	0	0.85226	1	23871	23871		14.838	5.4551	1	889810	+		56121	17835	40832	41160	54817	54817					-0.006634551446268233
TVESDSPYFDP	11	Unmodified	_TVESDSPYFDP_					0	0	0			REV__MASP1|p.S39F|1|0.29|ENSG00000127241|chr3:187285946-187285946|G/A|missense_variant	REV__MASP1|p.S39F|1|0.29|ENSG00000127241|chr3:187285946-187285946|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	628.7300415039062	2	628.769508	1255.52446	-0.73231	-0.00046045	4.2893	0.002697	3.557	0.0022365	629.2751361732714	91.821	0.25141	92.556	92.478	92.729	0.7345					6	4	2	0	0	0	0.73378	1	34969	34969		5.2969	0.96765	1	1962600	+		56122	26988	40833	41161	54818	54818					-0.09307803797923953
TVESGLVVY	9	Unmodified	_TVESGLVVY_					0	0	0		nc|ENSG00000159733|Q9HCC9-4|ZFYVE28;nc|ENSG00000159733|Q9HCC9-2|ZFYVE28	nc|ENSG00000159733|Q9HCC9-4|ZFYVE28	nc|ENSG00000159733|Q9HCC9-4|ZFYVE28	MULTI-SECPEP	A375_MHC_IP_R2	2	484.1605224609375	2	483.760758	965.506963	-0.68655	-0.00033213	0.25346	0.00012261	-0.43309	-0.00020951	483.7608748494351	81.245	0.65868	81.99	81.673	82.332	0.74474					21	12	2	0	0	0	0.24479	1	30802	30802		50.855	10.898	1	2772200			56123	14705	40834	41162	54819	54819					0.02282945457761798
TVESPKKPTL	10	Unmodified	_TVESPKKPTL_					0	0	0			REV__ENST00000584020.5_1_9:22049124-22120338:+|nuORF	REV__ENST00000584020.5_1_9:22049124-22120338:+|nuORF	MSMS	A375_MHC_IP_R1	1	550.6170654296875	2	550.321514	1098.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.67	1	111.67	111.17	112.17	0								0	0	0	0.15435	1	40936	40936		6.7232	0	1		+		56124	26367	40835	41163	54820	54820					0.08310567820285542
TVETKYDNI	9	Unmodified	_TVETKYDNI_					0	0	0		ENSG00000136169|ENST00000611815|SETDB2;nc|ENSG00000136169|Q96T68-3|SETDB2;nc|ENSG00000136169|Q96T68|SETDB2	ENSG00000136169|ENST00000611815|SETDB2	ENSG00000136169|ENST00000611815|SETDB2	MULTI-SECPEP	A375_MHC_IP_R2	2	541.1537475585938	2	541.771854	1081.52915	-0.74137	-0.00040165	-1.0462	-0.00056679	-1.7876	-0.00096845	542.2725343563673	89.658	0.91923	90.39	90.085	91.004	0.7318					25	17	2	0	0	0	0.75466	1	34304	34304		1.8442	0	1	1345800			56125	4762	40836	41164	54821	54821					-0.0083487486449485
TVETPFYAFTS	11	Unmodified	_TVETPFYAFTS_					0	0	0			REV__PTPRZ1|p.N1301Tfs*23|1|0.25|ENSG00000106278|chr7:122012947-122012947|A/-|frameshift_variant	REV__PTPRZ1|p.N1301Tfs*23|1|0.25|ENSG00000106278|chr7:122012947-122012947|A/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	631.83154296875	2	631.800611	1261.58667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.26	1	102.26	101.76	102.76	0								0	0	0	0.15541	1	37581	37581		17.113	4.0704	1		+		56126	17437	40837	41165	54822	54822					-0.03366032658914264
TVETPSPHY	9	Unmodified	_TVETPSPHY_					0	0	0		ENSG00000250722|ENST00000514985|SELENOP;ENST00000509276.5_1_5:42801070-42808275:-|nuORF;ENST00000514985.5_1_5:42801070-42808275:-|nuORF	ENSG00000250722|ENST00000514985|SELENOP	ENSG00000250722|ENST00000514985|SELENOP	MULTI-MSMS	A375_MHC_IP_R2	2	515.658935546875	2	515.745639	1029.47673	-0.70139	-0.00036174	0.9295	0.00047938	0.2281	0.00011764	515.7462802172384	42.385	0.66288	43.158	42.86	43.523	0.7724					28	12	3	0	0	0	0.43185	1	15679	15679		23.148	5.0134	1	5725900			56127	9849	40838	41166	54823	54823					-0.03683413207409103
TVEWSLYEV	9	Unmodified	_TVEWSLYEV_					0	0	0			REV__nc|ENSG00000101605|P52179-2|MYOM1	REV__nc|ENSG00000101605|P52179-2|MYOM1	MULTI-MSMS	A375_MHC_IP_R2	2	563.6758422851562	2	563.276772	1124.53899	-0.38945	-0.00021937	-0.017374	-9.7862E-06	-0.40682	-0.00022915	563.2769581040372	117.18	0.70887	117.84	117.43	118.14	0.65962					31	13	3	0	0	0	0.050162	1	44253	44253		64.236	1.6636	1	8334700	+		56128	17178	40839	41167	54824	54824					-0.01829686859082358
TVEWSLYEV	9	Unmodified	_TVEWSLYEV_					0	0	0			REV__nc|ENSG00000101605|P52179-2|MYOM1	REV__nc|ENSG00000101605|P52179-2|MYOM1	MULTI-SECPEP	A375_MHC_IP_R2	2	562.4970092773438	2	563.276772	1124.53899	-0.38945	-0.00021937	-0.017374	-9.7862E-06	-0.40682	-0.00022915	563.2769581040372	117.18	0.70887	117.84	117.43	118.14	0.65962					31	13	3	0	0	0	0.3607	1	44287	44287		42.095	2.1449	1	8334700	+		56129	17178	40839	41167	54825	54825					-0.01829686859082358
TVEYHRLDQNV	11	Unmodified	_TVEYHRLDQNV_					0	0	0		ENSG00000113583|ENST00000231512|C5orf15	ENSG00000113583|ENST00000231512|C5orf15	ENSG00000113583|ENST00000231512|C5orf15	MULTI-SECPEP	A375_MHC_IP_R1	1	459.1478271484375	3	458.565119	1372.67353	-0.62638	-0.00028724	0.9248	0.00042408	0.29841	0.00013684	458.56552002569754	29.123	0.30707	29.123	28.945	29.252	0					7	5	2	0	0	0	0.99332	1	9030	9030		4.4062	3.2964	1	959130			56130	3163	40840	41168	54826	54826					0.0020976661553504528
TVEYHRLDQNV	11	Unmodified	_TVEYHRLDQNV_					0	0	0		ENSG00000113583|ENST00000231512|C5orf15	ENSG00000113583|ENST00000231512|C5orf15	ENSG00000113583|ENST00000231512|C5orf15	MULTI-MATCH	A375_MHC_IP_R2	2		3	458.565119	1372.67353	-0.83075	-0.00038095	-0.018871	-8.6538E-06	-0.84963	-0.00038961	458.8992095578868	28.51	0.15326	29.189	29.06	29.214	0.67857	0.032616	-0.00022385	NaN	4.4062	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1126400			56131	3163	40840	41168							0.0020976661553504528
TVEYMNSIY	9	Unmodified	_TVEYMNSIY_					0	0	0		ENST00000525188.5_1_11:20409237-20415368:+|nuORF;nc|ENSG00000185238|O60678-2|PRMT3;ENSG00000185238|ENST00000331079|PRMT3	ENST00000525188.5_1_11:20409237-20415368:+|nuORF	ENST00000525188.5_1_11:20409237-20415368:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	561.1920166015625	2	560.254982	1118.49541	-0.56099	-0.0003143	-0.18006	-0.00010088	-0.74105	-0.00041518	560.756157234228	64.165	0.81374	64.905	64.446	65.259	0.74023					37	15	4	0	0	0	0.55818	1	24326	24326		16.942	0	1	3253300			56132	13067	40841	41169	54827	54827					-0.059096196278687785
TVEYVTFTS	9	Unmodified	_TVEYVTFTS_					0	0	0		nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1626586914062	2	523.755672	1045.49679	-0.42004	-0.00022	1.3113	0.00068682	0.8913	0.00046682	523.7568823790614	62.136	0.40894	62.136	61.891	62.3	0					9	7	2	0	0	0	0.55359	1	22453	22453		21.747	4.8044	1	2290900			56133	948	40842	41170	54828	54828					-0.024136622674632235
TVFDCCKPNNY	11	Unmodified	_TVFDCCKPNNY_					0	0	0			REV__ADRB1|p.D212N|1|0.19|ENSG00000043591|chr10:114044766-114044766|G/A|missense_variant	REV__ADRB1|p.D212N|1|0.19|ENSG00000043591|chr10:114044766-114044766|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	435.147705078125	3	435.186374	1302.53729	-0.1754	-7.6332E-05	-0.51767	-0.00022528	-0.69307	-0.00030161	435.5203768484376	46.245	0.60917	47.01	46.704	47.313	0.76519					18	11	2	0	0	0	0.7362	1	17357	17357		1.2148	0	1	1852500	+		56134	15338	40843	41171	54829	54829					-0.10187387210999077
TVFDQFNV	8	Unmodified	_TVFDQFNV_					0	0	0			REV__ENSG00000164296|ENST00000296736|TIGD6	REV__ENSG00000164296|ENST00000296736|TIGD6	MULTI-MSMS	A375_MHC_IP_R2	2	485.1738586425781	2	485.23745	968.460347	-0.83511	-0.00040523	0.1405	6.8174E-05	-0.69462	-0.00033705	485.2374418546227	40.942	0.91419	41.716	41.386	42.3	0.77451					50	17	4	0	0	0	0.7338	1	15071	15071		24.674	1.5255	1	47475000	+		56135	20476	40844	41172	54830	54830					-0.025144943735199377
TVFDQKTLL	9	Unmodified	_TVFDQKTLL_					0	0	0			REV__ENSG00000139547|ENST00000398138|RDH16	REV__ENSG00000139547|ENST00000398138|RDH16	MULTI-SECPEP	A375_MHC_IP_R2	2	355.4598083496094	3	355.53773	1063.59136	-0.43702	-0.00015538	2.3819	0.00084684	1.9449	0.00069147	355.53846987582835	34.484	0.20428	35.237	35.108	35.312	0.75225					5	3	2	0	0	0	0.77948	1	12453	12453		10.151	7.6521	1	733480	+		56136	19163	40845	41173	54831	54831					0.062108962745242025
TVFEGRIYV	9	Unmodified	_TVFEGRIYV_					0	0	0		nc|ENSG00000114648|O94889-2|KLHL18;ENSG00000114648|ENST00000232766|KLHL18	nc|ENSG00000114648|O94889-2|KLHL18	nc|ENSG00000114648|O94889-2|KLHL18	MULTI-SECPEP	A375_MHC_IP_R1	1	542.6947631835938	2	542.295299	1082.57605	-0.60547	-0.00032834	1.3277	0.00072001	0.72224	0.00039166	542.2953958269911	73.715	0.81069	73.715	73.437	74.247	0					31	15	3	0	0	0	0.46121	1	26840	26840		32.037	4.4087	1	3557900			56137	3233	40846	41174	54832	54832					0.038060294773458736
TVFEGRIYV	9	Unmodified	_TVFEGRIYV_					0	0	0		nc|ENSG00000114648|O94889-2|KLHL18;ENSG00000114648|ENST00000232766|KLHL18	nc|ENSG00000114648|O94889-2|KLHL18	nc|ENSG00000114648|O94889-2|KLHL18	MULTI-SECPEP	A375_MHC_IP_R2	2	542.694580078125	2	542.295299	1082.57605	-0.86825	-0.00047085	1.1016	0.00059739	0.23334	0.00012654	542.295495632552	72.954	1.0189	73.689	73.073	74.091	0.73541					35	19	3	0	0	0	0.53098	1	27651	27651		33.445	16.332	1	2636100			56138	3233	40846	41174	54833	54833					0.038060294773458736
TVFEHTFHV	9	Unmodified	_TVFEHTFHV_					0	0	0		nc|ENSG00000106105|P41250-2|GARS1;ENSG00000106105|ENST00000389266|GARS1	nc|ENSG00000106105|P41250-2|GARS1	nc|ENSG00000106105|P41250-2|GARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	559.1767578125	2	558.777274	1115.53999	-0.44199	-0.00024698	-0.1391	-7.7725E-05	-0.58109	-0.0003247	558.7770354494331	55.846	0.61017	55.846	55.584	56.194	0					18	11	2	0	0	0	0.053904	1	20006	20006		85.272	52.486	1	2701300			56139	2668	40847	41175	54834	54834					-0.013154276995237524
TVFEHTFHV	9	Unmodified	_TVFEHTFHV_					0	0	0		nc|ENSG00000106105|P41250-2|GARS1;ENSG00000106105|ENST00000389266|GARS1	nc|ENSG00000106105|P41250-2|GARS1	nc|ENSG00000106105|P41250-2|GARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	373.2538757324219	3	372.853941	1115.53999	0.28057	0.00010461	-0.19556	-7.2914E-05	0.085012	3.1697E-05	372.85379265920704	54.874	1.1699	55.625	55.37	56.54	0.75075					48	22	4	0	0	0	0.10969	1	20703	20703		43.772	31.598	1	8680800			56140	2668	40847	41175	54835	54835					-0.013154276995237524
TVFEHTFHV	9	Unmodified	_TVFEHTFHV_					0	0	0		nc|ENSG00000106105|P41250-2|GARS1;ENSG00000106105|ENST00000389266|GARS1	nc|ENSG00000106105|P41250-2|GARS1	nc|ENSG00000106105|P41250-2|GARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	559.1776733398438	2	558.777274	1115.53999	-0.86212	-0.00048174	1.4675	0.00082003	0.60542	0.00033829	558.7780654107977	54.867	0.61337	55.618	55.37	55.984	0.75075					17	11	2	0	0	0	0.04395	1	20741	20741		92.491	54.316	1	2156400			56141	2668	40847	41175	54836	54836					-0.013154276995237524
TVFGNPDPEV	10	Unmodified	_TVFGNPDPEV_					0	0	0		ENSG00000036448|ENST00000262113|MYOM2	ENSG00000036448|ENST00000262113|MYOM2	ENSG00000036448|ENST00000262113|MYOM2	MSMS	A375_MHC_IP_R1	1	537.6563720703125	2	537.758746	1073.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.488	1	80.488	79.988	80.988	0								0	0	0	0.1402	1	29393	29393		29.841	1.3537	1				56142	1137	40848	41176	54837	54837					-0.030871440359533153
TVFILAVS	8	Unmodified	_TVFILAVS_					0	0	0			REV__ENSG00000138459|ENST00000492406|SLC35A5	REV__ENSG00000138459|ENST00000492406|SLC35A5	MULTI-MSMS	A375_MHC_IP_R1	1	425.65606689453125	2	425.257654	848.500755	-0.47208	-0.00020075	-3.9133	-0.0016641	-4.3853	-0.0018649	425.2557568214865	142.66	0.25339	142.66	142.44	142.69	0					6	4	2	0	0	0	0.77717	1	54744	54744		5.2307	0	1	3281000	+		56143	19097	40849	41177	54838	54838					0.07044472016900727
TVFKQMTLL	9	Unmodified	_TVFKQMTLL_					0	0	0			REV__SIGLEC12|p.S31F|1|0.24|ENSG00000254521|chr19:51501642-51501642|G/A|missense_variant	REV__SIGLEC12|p.S31F|1|0.24|ENSG00000254521|chr19:51501642-51501642|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	360.2815856933594	3	360.875577	1079.6049	0.18817	6.7905E-05	0.038216	1.3791E-05	0.22638	8.1696E-05	360.87565335215606	50.94	0.35479	50.94	50.713	51.068	0					10	6	2	0	0	0	0.77396	1	18041	18041		0.69767	0.1345	1	1919100	+		56144	27964	40850	41178	54839	54839					0.06828430782115902
TVFNYVSPL	9	Unmodified	_TVFNYVSPL_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-SECPEP	A375_MHC_IP_R2	2	519.8829956054688	2	520.276575	1038.5386	-0.71713	-0.0003731	0.14054	7.3118E-05	-0.57659	-0.00029999	520.7785802787051	81.713	0.152	82.456	82.33	82.482	0.74293					4	2	2	0	0	0	0.78348	1	31027	31027		0	0	1	730520	+		56145	21924	40851	41179	54840	54840					0.020869382117098212
TVFPAGLANV	10	Unmodified	_TVFPAGLANV_					0	0	0		nc|ENSG00000161618|Q8IZ83-3|ALDH16A1;ENSG00000161618|ENST00000293350|ALDH16A1;ENST00000594549.1_1_19:49971616-49973721:+|nuORF;ENST00000599652.5_1_19:49969097-49972327:+|nuORF	nc|ENSG00000161618|Q8IZ83-3|ALDH16A1	nc|ENSG00000161618|Q8IZ83-3|ALDH16A1	MULTI-MSMS	A375_MHC_IP_R1	1	495.1766052246094	2	494.776742	987.538931	-0.10711	-5.2994E-05	0.27953	0.00013831	0.17243	8.5312E-05	494.77671659458116	108.42	0.81046	108.42	107.9	108.71	0					28	15	2	0	0	0	0.0064649	1	39732	39732		103.75	35.668	1	1801100			56146	6480	40852	41180	54841	54841					0.044663579315511015
TVFPAGLANV	10	Unmodified	_TVFPAGLANV_					0	0	0		nc|ENSG00000161618|Q8IZ83-3|ALDH16A1;ENSG00000161618|ENST00000293350|ALDH16A1;ENST00000594549.1_1_19:49971616-49973721:+|nuORF;ENST00000599652.5_1_19:49969097-49972327:+|nuORF	nc|ENSG00000161618|Q8IZ83-3|ALDH16A1	nc|ENSG00000161618|Q8IZ83-3|ALDH16A1	MULTI-MSMS	A375_MHC_IP_R2	2	495.17657470703125	2	494.776742	987.538931	-0.52856	-0.00026152	-0.20234	-0.00010011	-0.7309	-0.00036163	494.7766314579801	107.55	0.86624	108.31	107.84	108.71	0.75436					30	16	2	0	0	0	0.0064649	1	40620	40620		103.75	21.858	1	1735400			56147	6480	40852	41180	54842	54842					0.044663579315511015
TVFPKAKQV	9	Unmodified	_TVFPKAKQV_					0	0	0		ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	A375_MHC_IP_R1	1	509.7077331542969	2	509.30821	1016.60187	-0.62352	-0.00031756	-0.36852	-0.00018769	-0.99204	-0.00050525	509.30801602532904	25.791	0.404	25.791	25.613	26.017	0					13	7	2	0	0	0	0.024574	1	7600	7600		79.596	31.848	1	3557500			56148	6987	40853	41181	54843	54843					0.09422923719603205
TVFPKAKQV	9	Unmodified	_TVFPKAKQV_					0	0	0		ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	A375_MHC_IP_R2	2	509.7074279785156	2	509.30821	1016.60187	-1.1684	-0.00059505	0.019554	9.9589E-06	-1.1488	-0.00058509	509.30820719013235	25.05	0.25381	25.693	25.568	25.822	0.64368					7	4	2	0	0	0	0.44024	1	8360	8360		22.736	9.6938	1	3507300			56149	6987	40853	41181	54844	54844					0.09422923719603205
TVFPNKKSF	9	Unmodified	_TVFPNKKSF_					0	0	0		MGAM|p.R606K|1|0.21|ENSG00000257335|chr7:142034699-142034699|G/A|missense_variant	MGAM|p.R606K|1|0.21|ENSG00000257335|chr7:142034699-142034699|G/A|missense_variant	MGAM|p.R606K|1|0.21|ENSG00000257335|chr7:142034699-142034699|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	534.4555053710938	2	534.297842	1066.58113	-0.5724	-0.00030583	-1.6615	-0.00088772	-2.2339	-0.0011936	534.29764551783	81.885	0.15228	81.885	81.809	81.961	0					4	2	2	0	0	0	0.75164	1	29956	29956		2.9952	0	1	914380			56150	14382	40854	41182	54845	54845					0.05050333339931967
TVFPNRSPWCQ	11	Unmodified	_TVFPNRSPWCQ_					0	0	0		nc|ENSG00000152936|Q8N9Z9-2|LMNTD1;nc|ENSG00000152936|Q8N9Z9-3|LMNTD1;nc|ENSG00000152936|Q8N9Z9-4|LMNTD1;nc|ENSG00000152936|Q8N9Z9|LMNTD1;ENSG00000152936|ENST00000458174|LMNTD1	nc|ENSG00000152936|Q8N9Z9-2|LMNTD1	nc|ENSG00000152936|Q8N9Z9-2|LMNTD1	MULTI-SECPEP	A375_MHC_IP_R2	2	445.1046142578125	3	445.548523	1333.62374	-0.72191	-0.00032165	1.3674	0.00060924	0.64548	0.00028759	445.5490907708469	24.533	0.50751	25.177	24.857	25.364	0.64368					12	9	2	0	0	0	1.0004	1	7948	7948		0.40827	0.26837	1	2991200			56151	5989	40855	41183	54846	54846					-0.02972639594145221
TVFPYYYL	8	Unmodified	_TVFPYYYL_					0	0	0			REV__ENSG00000214782|ENST00000529108|MS4A18	REV__ENSG00000214782|ENST00000529108|MS4A18	MULTI-MSMS	A375_MHC_IP_R1	1	533.708251953125	2	533.268219	1064.52188	-0.47836	-0.00025509	-0.036682	-1.9561E-05	-0.51504	-0.00027465	533.2680615191807	82.428	0.55888	82.428	82.214	82.772	0					16	10	2	0	0	0	0.77624	1	30181	30181		8.5933	1.304	1	2606400	+		56152	22661	40856	41184	54847	54847					-0.0077956267425634
TVFPYYYL	8	Unmodified	_TVFPYYYL_					0	0	0			REV__ENSG00000214782|ENST00000529108|MS4A18	REV__ENSG00000214782|ENST00000529108|MS4A18	MSMS	A375_MHC_IP_R1	1	533.4266967773438	2	533.268219	1064.52188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.167	1	83.167	82.667	83.667	0								0	0	0	0.16876	1	30426	30426		9.3474	0	1		+		56153	22661	40856	41184	54848	54848					-0.0077956267425634
TVFPYYYL	8	Unmodified	_TVFPYYYL_					0	0	0			REV__ENSG00000214782|ENST00000529108|MS4A18	REV__ENSG00000214782|ENST00000529108|MS4A18	MSMS	A375_MHC_IP_R1	1	533.25	2	533.268219	1064.52188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.262	1	83.262	82.762	83.762	0								0	0	0	0.16876	1	30464	30464		9.3474	0	1		+		56154	22661	40856	41184	54849	54849					-0.0077956267425634
TVFSHAQTV	9	Unmodified	_TVFSHAQTV_					0	0	0		ENSG00000177954|ENST00000651669|RPS27;ENSG00000185088|ENST00000330964|RPS27L;ENST00000482846.1_1_15:63447754-63448774:-|nuORF	ENSG00000177954|ENST00000651669|RPS27	ENSG00000177954|ENST00000651669|RPS27	MULTI-MSMS	A375_MHC_IP_R1	1	495.65570068359375	2	495.256174	988.497795	-0.40734	-0.00020174	0.037199	1.8423E-05	-0.37014	-0.00018331	495.256168487303	34.165	0.40387	34.165	34.001	34.405	0					13	7	2	0	0	0	0.04093	1	11259	11259		67.838	31.711	1	5302900			56155	8117	40857	41185	54850	54850					0.0030859689209137287
TVFSHAQTV	9	Unmodified	_TVFSHAQTV_					0	0	0		ENSG00000177954|ENST00000651669|RPS27;ENSG00000185088|ENST00000330964|RPS27L;ENST00000482846.1_1_15:63447754-63448774:-|nuORF	ENSG00000177954|ENST00000651669|RPS27	ENSG00000177954|ENST00000651669|RPS27	MULTI-SECPEP	A375_MHC_IP_R2	2	495.65594482421875	2	495.256174	988.497795	-0.83896	-0.0004155	-0.043471	-2.1529E-05	-0.88243	-0.00043703	495.256139553393	33.418	0.40657	34.171	33.992	34.399	0.75225					13	7	2	0	0	0	0.03341	1	11978	11978		83.429	37.689	1	6365800			56156	8117	40857	41185	54851	54851					0.0030859689209137287
TVFTNPPQV	9	Unmodified	_TVFTNPPQV_					0	0	0		nc|ENSG00000159216|Q01196-3|RUNX1;nc|ENSG00000159216|Q01196-4|RUNX1;nc|ENSG00000159216|Q01196-11|RUNX1;nc|ENSG00000159216|Q01196|RUNX1;nc|ENSG00000159216|Q01196-9|RUNX1;nc|ENSG00000159216|Q01196-10|RUNX1;nc|ENSG00000159216|Q01196-2|RUNX1;ENSG00000159216|ENST00000675419|RUNX1;ENST00000467577.1_1_21:36228712-36231861:-|nuORF;nc|ENSG00000159216|Q01196-6|RUNX1;nc|ENSG00000159216|Q01196-5|RUNX1;nc|ENSG00000124813|Q13950-3|RUNX2;nc|ENSG00000124813|Q13950-2|RUNX2;ENSG00000124813|ENST00000647337|RUNX2	nc|ENSG00000159216|Q01196-3|RUNX1;nc|ENSG00000124813|Q13950-3|RUNX2	nc|ENSG00000159216|Q01196-3|RUNX1	MULTI-SECPEP	A375_MHC_IP_R1	1	502.16595458984375	2	501.766374	1001.5182	-0.38002	-0.00019068	-0.28832	-0.00014467	-0.66834	-0.00033535	501.76631502690077	74.089	0.8633	74.089	73.74	74.604	0					22	16	2	0	0	0	0.013591	1	27007	27007		106.94	46.866	1	1545000			56157	6359;3935	40858	41186	54852	54852					0.01749767551905279
TVFTNPPQV	9	Unmodified	_TVFTNPPQV_					0	0	0		nc|ENSG00000159216|Q01196-3|RUNX1;nc|ENSG00000159216|Q01196-4|RUNX1;nc|ENSG00000159216|Q01196-11|RUNX1;nc|ENSG00000159216|Q01196|RUNX1;nc|ENSG00000159216|Q01196-9|RUNX1;nc|ENSG00000159216|Q01196-10|RUNX1;nc|ENSG00000159216|Q01196-2|RUNX1;ENSG00000159216|ENST00000675419|RUNX1;ENST00000467577.1_1_21:36228712-36231861:-|nuORF;nc|ENSG00000159216|Q01196-6|RUNX1;nc|ENSG00000159216|Q01196-5|RUNX1;nc|ENSG00000124813|Q13950-3|RUNX2;nc|ENSG00000124813|Q13950-2|RUNX2;ENSG00000124813|ENST00000647337|RUNX2	nc|ENSG00000159216|Q01196-3|RUNX1;nc|ENSG00000124813|Q13950-3|RUNX2	nc|ENSG00000159216|Q01196-3|RUNX1	MULTI-MSMS	A375_MHC_IP_R2	2	501.6922607421875	2	501.766374	1001.5182	-0.55864	-0.00028031	-0.16885	-8.4722E-05	-0.72749	-0.00036503	501.76632418974066	73.388	0.8162	74.123	73.734	74.551	0.7354					26	15	3	0	0	0	0.41409	1	27918	27918		24.021	1.2843	1	2585400			56158	6359;3935	40858	41186	54853	54853					0.01749767551905279
TVFTNPPQV	9	Unmodified	_TVFTNPPQV_					0	0	0		nc|ENSG00000159216|Q01196-3|RUNX1;nc|ENSG00000159216|Q01196-4|RUNX1;nc|ENSG00000159216|Q01196-11|RUNX1;nc|ENSG00000159216|Q01196|RUNX1;nc|ENSG00000159216|Q01196-9|RUNX1;nc|ENSG00000159216|Q01196-10|RUNX1;nc|ENSG00000159216|Q01196-2|RUNX1;ENSG00000159216|ENST00000675419|RUNX1;ENST00000467577.1_1_21:36228712-36231861:-|nuORF;nc|ENSG00000159216|Q01196-6|RUNX1;nc|ENSG00000159216|Q01196-5|RUNX1;nc|ENSG00000124813|Q13950-3|RUNX2;nc|ENSG00000124813|Q13950-2|RUNX2;ENSG00000124813|ENST00000647337|RUNX2	nc|ENSG00000159216|Q01196-3|RUNX1;nc|ENSG00000124813|Q13950-3|RUNX2	nc|ENSG00000159216|Q01196-3|RUNX1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	501.766374	1001.5182	-0.55864	-0.00028031	-0.16885	-8.4722E-05	-0.72749	-0.00036503	501.76632418974066	73.388	0.8162	74.123	73.734	74.551	0.7354	0.017068	7.193E-05	NaN	106.94	26	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2585400			56159	6359;3935	40858	41186							0.01749767551905279
TVFVNLLDL	9	Unmodified	_TVFVNLLDL_					0	0	0		nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;nc|ENSG00000107736|Q9H251-6|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	A375_MHC_IP_R1	1	517.6991577148438	2	517.30005	1032.58555	-0.38258	-0.00019791	0.011638	6.0201E-06	-0.37095	-0.00019189	517.3000276988391	92.209	0.96374	92.209	91.857	92.821	0					45	18	4	0	0	0	0.054426	1	33843	33843		62.573	2.4988	1	14198000			56160	2753	40859	41187	54854	54854					0.07055797762859584
TVFYIWPW	8	Unmodified	_TVFYIWPW_					0	0	0			REV__CACNA1C|p.P1597Qfs*32|1|0.14|ENSG00000151067|chr12:2668954-2668961|CCTCTGAA/-|frameshift_variant;REV__ENSG00000081248|ENST00000362061|CACNA1S	REV__CACNA1C|p.P1597Qfs*32|1|0.14|ENSG00000151067|chr12:2668954-2668961|CCTCTGAA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	555.6796875	2	556.284203	1110.55385	-0.42721	-0.00023765	1.2928	0.00071919	0.86564	0.00048154	556.2845518824158	54.483	0.40583	54.483	54.213	54.619	0					11	7	2	0	0	0	0.972	1	19489	19489		10.183	0.83596	1	1465400	+		56161	15548;16772	40860	41188	54855	54855					0.002998497995577054
TVGADYEYRAA	11	Unmodified	_TVGADYEYRAA_					0	0	0		tr|U7SSR3|U7SSR3_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01351PE=3SV=1	tr|U7SSR3|U7SSR3_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01351PE=3SV=1	tr|U7SSR3|U7SSR3_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01351PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	405.5876770019531	3	405.859532	1214.55677	-0.41	-0.0001664	0.23191	9.4125E-05	-0.17809	-7.228E-05	405.85952614803415	34.35	0.505	34.35	34.103	34.608	0					20	9	3	0	0	0	0.72649	1	11348	11348		6.6235	1.9075	1	4470100			56162	29646	40861	41189	54856	54856					-0.04192971604243212
TVGAGSED	8	Unmodified	_TVGAGSED_					0	0	0		nc|ENSG00000133606|Q9UHC7-4|MKRN1;ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1	nc|ENSG00000133606|Q9UHC7-4|MKRN1	nc|ENSG00000133606|Q9UHC7-4|MKRN1	MULTI-SECPEP	A375_MHC_IP_R2	2	735.8344116210938	1	735.315539	734.308263	-0.8124	-0.00059737	-3.3793	-0.0024848	-4.1917	-0.0030822	735.314446823914	123.69	0.45358	124.02	123.64	124.09	0.32969					9	8	2	0	0	0	0.97144	1	47561	47561		5.2307	0	1	16432000			56163	4515	40862	41190	54857	54857					-0.0695189512109664
TVGDADLVQDE	11	Unmodified	_TVGDADLVQDE_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MULTI-MSMS	A375_MHC_IP_R1	1	582.7063598632812	2	581.267133	1160.51971	-0.22863	-0.00013289	-0.1799	-0.00010457	-0.40853	-0.00023747	581.2671061359913	47.353	0.61288	47.353	47.055	47.668	0					31	11	4	0	0	0	0.73078	1	16561	16561		8.1555	8.1555	1	8945300	+		56164	18241	40863	41191	54858	54858					-0.05412687940633987
TVGERFLLKAG	11	Unmodified	_TVGERFLLKAG_					0	0	0			REV__nc|ENSG00000172432|Q9BX10-3|GTPBP2	REV__nc|ENSG00000172432|Q9BX10-3|GTPBP2	MULTI-MSMS	A375_MHC_IP_R2	2	397.9678039550781	3	397.567912	1189.68191	-0.13163	-5.2331E-05	-0.042636	-1.6951E-05	-0.17426	-6.9281E-05	397.56786842984815	39.673	0.45691	40.447	40.219	40.676	0.77451					21	8	3	0	0	0	0.33856	1	14662	14662		29.281	2.1523	1	11897000	+		56165	21143	40864	41192	54859	54859					0.09465365322807884
TVGFGYGESNY	11	Unmodified	_TVGFGYGESNY_					0	0	0			REV__ENSG00000112818|ENST00000230588|MEP1A	REV__ENSG00000112818|ENST00000230588|MEP1A	MULTI-SECPEP	A375_MHC_IP_R2	2	596.6658935546875	2	597.259111	1192.50367	-0.46107	-0.00027538	0.74505	0.00044499	0.28398	0.00016961	597.7616356218954	79.16	0.25274	79.905	79.693	79.946	0.74474					5	4	2	0	0	0	0.98591	1	30003	30003		5.7319	0.43497	1	774310	+		56166	17757	40865	41193	54860	54860					-0.08488349386880145
TVGFYRTQ	8	Unmodified	_TVGFYRTQ_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000141279|P55786-2|NPEPPS;ENST00000531486.1_1_17:45681241-45696545:+|nuORF;ENST00000530514.5_1_17:45668242-45699283:+|nuORF	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-MSMS	A375_MHC_IP_R2	2	486.65093994140625	2	486.250892	970.48723	-0.74572	-0.00036261	1.0237	0.00049776	0.27796	0.00013516	486.2514198990539	35.982	0.56171	36.745	36.486	37.048	0.76338					16	10	2	0	0	0	0.77624	1	13102	13102		8.5933	0	1	2716600			56167	5224	40866	41194	54861	54861					0.0008061423766321241
TVGHRQRGS	9	Unmodified	_TVGHRQRGS_					0	0	0			REV__ENST00000304733.7_1_16:90072024-90072498:-|nuORF	REV__ENST00000304733.7_1_16:90072024-90072498:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	499.1665954589844	2	499.267939	996.521324	-0.087269	-4.357E-05	0.50001	0.00024964	0.41274	0.00020607	499.26817906527737	38.795	0.5077	38.795	38.577	39.085	0					12	9	2	0	0	0	0.60917	1	13165	13165		19.257	0	1	6188900	+		56168	23458	40867	41195	54862	54862					0.02292455449287445
TVGIIGLGR	9	Unmodified	_TVGIIGLGR_					0	0	0		ENSG00000137106|ENST00000318158|GRHPR;ENST00000460882.5_1_9:37422710-37436776:+|nuORF;ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENST00000493368.5_1_9:37422710-37428742:+|nuORF;ENST00000497693.1_1_9:37428391-37428742:+|nuORF	ENSG00000137106|ENST00000318158|GRHPR	ENSG00000137106|ENST00000318158|GRHPR	MSMS	A375_MHC_IP_R1	1	443.3100891113281	2	443.279452	884.544351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.202	1	68.202	67.702	68.702	0								0	0	0	0.1493	1	24722	24722		22.736	2.2827	1				56169	4861	40868	41196	54863	54863					0.09746081514037996
TVGIIGLGR	9	Unmodified	_TVGIIGLGR_					0	0	0		ENSG00000137106|ENST00000318158|GRHPR;ENST00000460882.5_1_9:37422710-37436776:+|nuORF;ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENST00000493368.5_1_9:37422710-37428742:+|nuORF;ENST00000497693.1_1_9:37428391-37428742:+|nuORF	ENSG00000137106|ENST00000318158|GRHPR	ENSG00000137106|ENST00000318158|GRHPR	MULTI-MSMS	A375_MHC_IP_R2	2	443.30999755859375	2	443.279452	884.544351	-0.42868	-0.00019003	0.50139	0.00022226	0.072704	3.2228E-05	443.2796177726546	66.875	1.4262	67.611	66.882	68.308	0.73631					45	27	2	0	0	0	0.41409	1	25504	25504		24.021	0	1	1631500			56170	4861	40868	41196	54864	54864					0.09746081514037996
TVGISVGELW	10	Unmodified	_TVGISVGELW_					0	0	0		ENST00000230056.7_1_6:24775218-24775341:+|nuORF;ENST00000468943.1_1_6:24775218-24777534:+|nuORF	ENST00000230056.7_1_6:24775218-24775341:+|nuORF	ENST00000230056.7_1_6:24775218-24775341:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	530.7064208984375	2	530.787307	1059.56006	-0.58605	-0.00031107	0.2089	0.00011088	-0.37716	-0.00020019	530.7872208801135	75.28	0.5036	75.28	75.11	75.614	0					13	9	3	0	0	0	0.72086	1	27529	27529		24.021	0	1	1251000			56171	10138	40869	41197	54865	54865					0.03266323240427482
TVGKANHAEC	10	Unmodified	_TVGKANHAEC_					0	0	0			REV__ENST00000599659.5_1_19:41725288-41749617:+|nuORF	REV__ENST00000599659.5_1_19:41725288-41749617:+|nuORF	MSMS	A375_MHC_IP_R1	1	515.1739501953125	2	515.242741	1028.47093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.611	1	46.611	46.111	47.111	0								0	0	0	0.15089	1	16365	16365		16.149	0.30192	1		+		56172	20775	40870	41198	54866	54866					-0.04216834990734242
TVGKANHAEC	10	Unmodified	_TVGKANHAEC_					0	0	0			REV__ENST00000599659.5_1_19:41725288-41749617:+|nuORF	REV__ENST00000599659.5_1_19:41725288-41749617:+|nuORF	MSMS	A375_MHC_IP_R2	2	515.1732788085938	2	515.242741	1028.47093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.797	1	46.562	46.062	47.062	0.76519								0	0	0	0.1524	1	17132	17132		13.042	0	1		+		56173	20775	40870	41198	54867	54867					-0.04216834990734242
TVGLIRNL	8	Unmodified	_TVGLIRNL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	A375_MHC_IP_R1	1	443.6793212890625	2	443.279452	884.544351	-0.13319	-5.9042E-05	0.19033	8.4369E-05	0.057137	2.5328E-05	443.2795118945994	64.37	4.0168	64.37	63.887	67.904	0					212	78	4	0	0	0	0.052283	3	23386	23386;24248;24467		103.75	3.3768	1	103310000			56174	7257	40871	41199	54868;54869;54870	54868					0.09746081514037996
TVGLIRNL	8	Unmodified	_TVGLIRNL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	A375_MHC_IP_R2	2	443.6790771484375	2	443.279452	884.544351	-0.31226	-0.00013842	-0.026883	-1.1917E-05	-0.33914	-0.00015034	443.2793990105494	63.374	3.6112	64.114	63.582	67.193	0.74022					208	70	4	0	0	0	0.022188	2	24108	24108;24744		115.69	7.695	1	102680000			56175	7257	40871	41199	54871;54872	54871					0.09746081514037996
TVGLIRNL	8	Unmodified	_TVGLIRNL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	A375_MHC_IP_R2	2	443.6793518066406	2	443.279452	884.544351	-0.42868	-0.00019003	0.50139	0.00022226	0.072704	3.2228E-05	443.2796177726546	66.875	1.4262	67.611	66.882	68.308	0.73631					45	27	2	0	0	0	0.7256	1	25279	25279		26.884	2.8631	1	1631500			56176	7257	40871	41199	54873	54873					0.09746081514037996
TVGLSGPIP	9	Unmodified	_TVGLSGPIP_					0	0	0			REV__ENSG00000171587|ENST00000400454|DSCAM	REV__ENSG00000171587|ENST00000400454|DSCAM	MSMS	A375_MHC_IP_R2	2	420.6457824707031	2	420.744911	839.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.15	1	107.9	107.4	108.4	0.75436								0	0	0	0.15283	1	40485	40485		16.942	0	1		+		56177	21080	40872	41200	54874	54874					0.04910997494471303
TVGMMCATHAM	11	Unmodified	_TVGMMCATHAM_					0	0	0			REV__ENSG00000197125|ENST00000642064|OR8B8	REV__ENSG00000197125|ENST00000642064|OR8B8	MSMS	A375_MHC_IP_R2	2	576.621337890625	2	576.737065	1151.45958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.705	1	92.44	91.94	92.94	0.7345								0	0	0	0.16249	1	34879	34879		5.7319	0.97584	1		+		56178	22258	40873	41201	54875	54875					-0.11009439672398003
TVGNGVGF	8	Unmodified	_TVGNGVGF_					0	0	0		ENSG00000131471|ENST00000308423|AOC3;nc|ENSG00000131471|Q16853-3|AOC3	ENSG00000131471|ENST00000308423|AOC3	ENSG00000131471|ENST00000308423|AOC3	MULTI-SECPEP	A375_MHC_IP_R2	2	374.9535217285156	2	375.692678	749.370804	0.13773	5.1745E-05	-1.2131	-0.00045574	-1.0753	-0.000404	375.6921561913149	36.208	0.45948	36.979	36.698	37.157	0.7709					12	8	2	0	0	0	0.97144	1	13145	13145		5.2307	0	1	983820			56179	4334	40874	41202	54876	54876					-0.013907042622349763
TVGNWSECSV	10	Unmodified	_TVGNWSECSV_					0	0	0		nc|ENSG00000151388|P58397-3|ADAMTS12;ENSG00000151388|ENST00000504830|ADAMTS12	nc|ENSG00000151388|P58397-3|ADAMTS12	nc|ENSG00000151388|P58397-3|ADAMTS12	MULTI-SECPEP	A375_MHC_IP_R1	1	540.7080078125	2	541.234581	1080.45461	-0.58541	-0.00031684	0.95485	0.0005168	0.36943	0.00019995	541.2355569107607	100.67	0.40469	100.67	100.53	100.94	0					15	7	3	0	0	0	0.92227	1	36962	36962		8.7454	2.0222	1	1326500			56180	5902	40875	41203	54877	54877					-0.08239960947503278
TVGNWSECSV	10	Unmodified	_TVGNWSECSV_					0	0	0		nc|ENSG00000151388|P58397-3|ADAMTS12;ENSG00000151388|ENST00000504830|ADAMTS12	nc|ENSG00000151388|P58397-3|ADAMTS12	nc|ENSG00000151388|P58397-3|ADAMTS12	MULTI-MATCH	A375_MHC_IP_R2	2		2	541.234581	1080.45461	-0.60183	-0.00032573	-0.62771	-0.00033974	-1.2295	-0.00066547	541.2354438938436	100	0.50803	100.77	100.47	100.98	0.76277	0.04816	-0.0014903	NaN	5.2969	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	697090			56181	5902	40875	41203							-0.08239960947503278
TVGPKTFSW	9	Unmodified	_TVGPKTFSW_					0	0	0		ENST00000497675.2_1_1:2125076-2125544:-|nuORF;ENST00000476803.1_1_1:2121150-2125598:-|nuORF;nc|ENSG00000162585|Q6NZ36-5|FAAP20;ENSG00000162585|ENST00000378546|FAAP20;nc|ENSG00000162585|Q6NZ36-4|FAAP20;nc|ENSG00000162585|Q6NZ36-3|FAAP20;ENST00000401813.7_1_1:2121150-2129708:-|nuORF;nc|ENSG00000162585|Q6NZ36-2|FAAP20;ENST00000487186.5_1_1:2121150-2130436:-|nuORF	ENST00000497675.2_1_1:2125076-2125544:-|nuORF	ENST00000497675.2_1_1:2125076-2125544:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	511.6875	2	511.768917	1021.52328	-0.25807	-0.00013207	0.19721	0.00010093	-0.060859	-3.1146E-05	511.76888339552846	69.015	1.2175	69.015	68.514	69.732	0					43	23	3	0	0	0	0.13845	1	25112	25112		43.772	3.8151	1	6134600			56182	6552	40876	41204	54878	54878					0.013380714145114325
TVGPKTFSW	9	Unmodified	_TVGPKTFSW_					0	0	0		ENST00000497675.2_1_1:2125076-2125544:-|nuORF;ENST00000476803.1_1_1:2121150-2125598:-|nuORF;nc|ENSG00000162585|Q6NZ36-5|FAAP20;ENSG00000162585|ENST00000378546|FAAP20;nc|ENSG00000162585|Q6NZ36-4|FAAP20;nc|ENSG00000162585|Q6NZ36-3|FAAP20;ENST00000401813.7_1_1:2121150-2129708:-|nuORF;nc|ENSG00000162585|Q6NZ36-2|FAAP20;ENST00000487186.5_1_1:2121150-2130436:-|nuORF	ENST00000497675.2_1_1:2125076-2125544:-|nuORF	ENST00000497675.2_1_1:2125076-2125544:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	511.68701171875	2	511.768917	1021.52328	-0.6488	-0.00033203	0.24814	0.00012699	-0.40066	-0.00020505	511.7688321408227	68.208	1.3209	68.943	68.102	69.423	0.73511					51	25	3	0	0	0	0.068071	1	25861	25861		57.249	21.122	1	8572200			56183	6552	40876	41204	54879	54879					0.013380714145114325
TVGPYKGVLR	10	Unmodified	_TVGPYKGVLR_					0	0	0			REV__ENST00000530578.1_1_11:122665536-122667965:+|nuORF	REV__ENST00000530578.1_1_11:122665536-122667965:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	364.2938232421875	3	363.885353	1088.63423	0.087674	3.1903E-05	1.4254	0.00051869	1.5131	0.0005506	363.88560730761037	65.36	0.35934	65.36	65.206	65.565	0					10	6	2	0	0	0	0.92957	1	23663	23663		1.5923	0	1	379770	+		56184	25839	40877	41205	54880	54880					0.09345711122591638
TVGQAETEEDT	11	Unmodified	_TVGQAETEEDT_					0	0	0			REV__ENST00000466375.2_2_22:44579501-44579708:+|nuORF	REV__ENST00000466375.2_2_22:44579501-44579708:+|nuORF	MSMS	A375_MHC_IP_R2	2	590.213134765625	2	590.254222	1178.49389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.253	1	45.022	44.522	45.522	0.7691								0	0	0	0.16124	1	16513	16513		12.241	0	1		+		56185	25036	40878	41206	54881	54881					-0.08821582182940801
TVGRRRKKRRR	11	Unmodified	_TVGRRRKKRRR_					0	0	0		ENST00000235307.6_1_1:184356289-184446531:+|nuORF	ENST00000235307.6_1_1:184356289-184446531:+|nuORF	ENST00000235307.6_1_1:184356289-184446531:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	734.4642944335938	2	734.979633	1467.94471	-0.4589	-0.00033729	-2.328	-0.001711	-2.7869	-0.0020483	734.9758241603247	125.74	0.50217	125.74	125.55	126.05	0					10	9	2	0	0	0	0.99676	1	47833	47833		5.7319	2.9967	1	6334200			56186	10158	40879	41207	54882	54882					0.22945843621801032
TVGRRSPELSY	11	Unmodified	_TVGRRSPELSY_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-SECPEP	A375_MHC_IP_R1	1	421.9202575683594	3	422.226326	1263.65715	0.0031465	1.3285E-06	-0.46279	-0.0001954	-0.45965	-0.00019407	422.2260738174088	25.012	0.40341	25.012	24.903	25.306	0					9	7	2	0	0	0	0.99625	1	7343	7343		7.4771	0	1	4225800			56187	14949	40880	41208	54883	54883					0.03586685449454308
TVGSDDRFSF	10	Unmodified	_TVGSDDRFSF_					0	0	0		RAE1|p.G295D|1|0.27|ENSG00000101146|chr20:57374665-57374665|G/A|missense_variant	RAE1|p.G295D|1|0.27|ENSG00000101146|chr20:57374665-57374665|G/A|missense_variant	RAE1|p.G295D|1|0.27|ENSG00000101146|chr20:57374665-57374665|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	565.7274780273438	2	565.759278	1129.504	-0.18406	-0.00010414	0.049442	2.7972E-05	-0.13462	-7.6164E-05	565.7591329863243	54.098	0.86018	54.098	53.656	54.516	0					28	16	3	0	0	0	0.52785	1	19232	19232		26.268	1.2772	1	6381100			56188	15265	40881	41209	54884	54884					-0.055569296670455515
TVGSDDRFSF	10	Unmodified	_TVGSDDRFSF_					0	0	0		RAE1|p.G295D|1|0.27|ENSG00000101146|chr20:57374665-57374665|G/A|missense_variant	RAE1|p.G295D|1|0.27|ENSG00000101146|chr20:57374665-57374665|G/A|missense_variant	RAE1|p.G295D|1|0.27|ENSG00000101146|chr20:57374665-57374665|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	565.1689453125	2	565.759278	1129.504	-1.0085	-0.00057059	0.6908	0.00039083	-0.31773	-0.00017976	565.7595380869739	53.379	0.71521	54.13	53.842	54.557	0.75105					27	13	3	0	0	0	0.52785	1	20221	20221		26.268	6.9062	1	7004000			56189	15265	40881	41209	54885	54885					-0.055569296670455515
TVGSDYAHAE	10	Unmodified	_TVGSDYAHAE_					0	0	0		PPIP5K1|p.P265S|1|0.17|ENSG00000168781|chr15:43581373-43581373|G/A|missense_variant	PPIP5K1|p.P265S|1|0.17|ENSG00000168781|chr15:43581373-43581373|G/A|missense_variant	PPIP5K1|p.P265S|1|0.17|ENSG00000168781|chr15:43581373-43581373|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	525.6666870117188	2	525.230353	1048.44615	-0.40139	-0.00021082	-0.02131	-1.1192E-05	-0.4227	-0.00022201	525.2302916968117	51.143	0.35546	51.143	50.915	51.27	0					10	6	2	0	0	0	0.70496	1	18106	18106		10.074	0.72649	1	1602400			56190	15213	40882	41210	54886	54886					-0.07613191592463409
TVGSERLFSV	10	Unmodified	_TVGSERLFSV_					0	0	0		ENSG00000178033|ENST00000368599|CALHM5	ENSG00000178033|ENST00000368599|CALHM5	ENSG00000178033|ENST00000368599|CALHM5	MULTI-SECPEP	A375_MHC_IP_R2	2	547.1997680664062	2	547.795663	1093.57677	-1.0889	-0.00059649	-2.7477	-0.0015052	-3.8366	-0.0021017	548.2954489177716	58.331	0.2066	59.08	58.98	59.187	0.74894					5	3	2	0	0	0	0.70528	1	22075	22075		26.268	5.8536	1	535640			56191	8126	40883	41211	54887	54887					0.03372824126381602
TVGSRKEMPLL	11	Unmodified	_TVGSRKEMPLL_					0	0	0		ENSG00000162621|ENST00000294635|LRRC53	ENSG00000162621|ENST00000294635|LRRC53	ENSG00000162621|ENST00000294635|LRRC53	MULTI-SECPEP	A375_MHC_IP_R2	2	616.24658203125	2	615.847373	1229.68019	-0.56517	-0.00034806	0.37622	0.0002317	-0.18895	-0.00011636	615.8474965981023	104.47	1.1187	105.23	104.7	105.82	0.76308					50	21	3	0	0	0	0.9889	1	39642	39642		8.1555	0	1	6159700			56192	6565	40884	41212	54888	54888					0.0745398824253698
TVGSRLHWGS	10	Unmodified	_TVGSRLHWGS_					0	0	0			REV__ENST00000399136.5_1_21:37834011-37914886:-|nuORF	REV__ENST00000399136.5_1_21:37834011-37914886:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	366.582275390625	3	367.192957	1098.55704	-0.099649	-3.659E-05	0.31886	0.00011708	0.21921	8.0491E-05	367.1930030572867	41.328	0.45716	41.328	41.114	41.571	0					12	8	2	0	0	0	0.90513	1	14360	14360		4.7159	0	1	1167900	+		56193	24387	40885	41213	54889	54889					0.011704929062716474
TVGTAGAERW	10	Unmodified	_TVGTAGAERW_					0	0	0			REV__ENST00000552231.5_1_12:70637079-70637184:+|nuORF	REV__ENST00000552231.5_1_12:70637079-70637184:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	524.663818359375	2	524.26453	1046.51451	-0.56597	-0.00029672	-0.48142	-0.00025239	-1.0474	-0.00054911	524.2644084774089	33.174	0.65948	33.174	32.938	33.597	0					38	12	4	0	0	0	0.15514	1	10767	10767		53.833	7.8118	1	19003000	+		56194	26052	40886	41214	54890	54890					-0.0068890222196387185
TVGTAGAERW	10	Unmodified	_TVGTAGAERW_					0	0	0			REV__ENST00000552231.5_1_12:70637079-70637184:+|nuORF	REV__ENST00000552231.5_1_12:70637079-70637184:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	524.6641235351562	2	524.26453	1046.51451	-0.55916	-0.00029315	-1.028	-0.00053897	-1.5872	-0.00083211	524.2643210044232	32.485	0.60896	33.222	32.96	33.569	0.73692					38	11	5	0	0	0	0.086961	1	11556	11556		66.457	22.598	1	17730000	+		56195	26052	40886	41214	54891	54891					-0.0068890222196387185
TVGVLSSF	8	Unmodified	_TVGVLSSF_					0	0	0			REV__ADGRG3|p.L482F|1|0.47|ENSG00000182885|chr16:57685830-57685830|C/T|missense_variant	REV__ADGRG3|p.L482F|1|0.47|ENSG00000182885|chr16:57685830-57685830|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	405.6236572265625	2	405.223811	808.433069	-0.23247	-9.4202E-05	0.30201	0.00012238	0.069544	2.8181E-05	405.2237339841087	54.279	0.45435	55.03	54.865	55.32	0.75075					14	8	3	0	0	0	0.24409	1	20541	20541		63.563	0	1	1412200	+		56196	15328	40887	41215	54892	54892					0.021190220860944464
TVGVLSSF	8	Unmodified	_TVGVLSSF_					0	0	0			REV__ADGRG3|p.L482F|1|0.47|ENSG00000182885|chr16:57685830-57685830|C/T|missense_variant	REV__ADGRG3|p.L482F|1|0.47|ENSG00000182885|chr16:57685830-57685830|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	405.223811	808.433069	-0.23247	-9.4202E-05	0.30201	0.00012238	0.069544	2.8181E-05	405.2237339841087	54.279	0.45435	55.03	54.865	55.32	0.75075	-0.13702	-5.8934E-05	NaN	63.563	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1412200	+		56197	15328	40887	41215							0.021190220860944464
TVGVVRVQKL	10	Unmodified	_TVGVVRVQKL_					0	0	0			REV__nc|ENSG00000138658|Q86YA3-7|ZGRF1	REV__nc|ENSG00000138658|Q86YA3-7|ZGRF1	MULTI-MSMS	A375_MHC_IP_R1	1	366.94134521484375	3	366.904636	1097.69208	0.27241	9.9948E-05	-0.57293	-0.00021021	-0.30052	-0.00011026	366.9043582978474	25.105	0.81276	25.105	24.749	25.562	0					29	15	3	0	0	0	0.62871	3	7336	7291;7313;7336		18.721	4.5658	1	7036900	+		56198	19110	40888	41216	54893;54894;54895	54895					0.14713973048060325
TVGWHQASDQ	10	Unmodified	_TVGWHQASDQ_					0	0	0			REV__ENST00000362042.7_1_17:46137782-46138226:+|nuORF	REV__ENST00000362042.7_1_17:46137782-46138226:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	565.7091674804688	2	564.757069	1127.49959	-0.88709	-0.00050099	-0.54623	-0.00030849	-1.4333	-0.00080948	564.7565871981922	56.693	0.61119	57.443	57.101	57.712	0.75014					23	11	3	0	0	0	0.70179	1	21347	21347		11.495	1.4208	1	3107800	+		56199	23931	40889	41217	54896	54896					-0.05906394089947753
TVHEIPEEPR	10	Unmodified	_TVHEIPEEPR_					0	0	0			REV__nc|ENSG00000008869|Q9P2D3-3|HEATR5B	REV__nc|ENSG00000008869|Q9P2D3-3|HEATR5B	MULTI-MSMS	A375_MHC_IP_R2	2	403.59735107421875	3	402.875293	1205.60405	-0.28024	-0.0001129	1.2161	0.00048992	0.93583	0.00037702	402.8752818755868	24.232	0.86578	24.875	24.398	25.263	0.64368					33	16	4	0	0	0	0.70334	1	7821	7821		6.6235	0	1	21648000	+		56200	16181	40890	41218	54897	54897					0.009473076667291025
TVHFDKMLT	9	Unmodified	_TVHFDKMLT_					0	0	0		ENSG00000173093|ENST00000308208|CCDC63;nc|ENSG00000173093|Q8NA47-2|CCDC63	ENSG00000173093|ENST00000308208|CCDC63	ENSG00000173093|ENST00000308208|CCDC63	MULTI-SECPEP	A375_MHC_IP_R2	2	363.9339599609375	3	364.523315	1090.54812	-0.098116	-3.5765E-05	-0.20948	-7.6359E-05	-0.30759	-0.00011212	364.5231678530494	45.147	0.35386	45.913	45.797	46.151	0.76599					10	6	2	0	0	0	0.78348	1	16867	16867		2.4985	0	1	1338200			56201	7768	40891	41219	54898	54898					0.006463832255803936
TVHFGRQA	8	Unmodified	_TVHFGRQA_					0	0	0		nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF;nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT	nc|ENSG00000122966|O14578-3|CIT	nc|ENSG00000122966|O14578-3|CIT	MSMS	A375_MHC_IP_R1	1	458.28240966796875	2	458.243401	914.472249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.436	1	24.436	23.936	24.936	0								0	0	0	0.16876	1	6937	6937		7.9102	2.1497	1				56202	3818	40892	41220	54899	54899					0.011591671603241593
TVHFTFEAV	9	Unmodified	_TVHFTFEAV_					0	0	0		CTCFL|p.S89F|1|0.26|ENSG00000124092|chr20:57523940-57523940|G/A|missense_variant	CTCFL|p.S89F|1|0.26|ENSG00000124092|chr20:57523940-57523940|G/A|missense_variant	CTCFL|p.S89F|1|0.26|ENSG00000124092|chr20:57523940-57523940|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	525.1083374023438	2	525.766374	1049.5182	-0.27806	-0.0001462	-1.2429	-0.00065345	-1.5209	-0.00079965	525.7660171873509	35.591	0.51228	35.591	35.369	35.881	0					14	8	3	0	0	0	0.52144	1	11875	11875		11.64	1.5664	1	2778000			56203	681	40893	41221	54900	54900					-0.004582324480907118
TVHGDPGF	8	Unmodified	_TVHGDPGF_					0	0	0			REV__nc|ENSG00000185973|Q9NVH6-6|TMLHE	REV__nc|ENSG00000185973|Q9NVH6-6|TMLHE	MULTI-SECPEP	A375_MHC_IP_R1	1	415.595458984375	2	415.195585	828.376617	0.26595	0.00011042	-0.54511	-0.00022633	-0.27916	-0.00011591	415.1953013368752	59.016	0.55933	59.016	58.736	59.295	0					15	10	2	0	0	0	0.90224	1	21251	21251		13.508	0	1	1697800	+		56204	27418	40894	41222	54901	54901					-0.044436057505663484
TVHGDPGF	8	Unmodified	_TVHGDPGF_					0	0	0			REV__nc|ENSG00000185973|Q9NVH6-6|TMLHE	REV__nc|ENSG00000185973|Q9NVH6-6|TMLHE	MULTI-SECPEP	A375_MHC_IP_R1	1	829.5617065429688	1	829.383894	828.376617	-0.40477	-0.00033571	-0.20592	-0.00017079	-0.6107	-0.0005065	829.3834365695475	59.068	0.50984	59.068	58.836	59.346	0					15	9	2	0	0	0	0.90224	1	21206	21206		26.341	6.9023	1	2285500	+		56205	27418	40894	41222	54902	54902					-0.044436057505663484
TVHGDPGF	8	Unmodified	_TVHGDPGF_					0	0	0			REV__nc|ENSG00000185973|Q9NVH6-6|TMLHE	REV__nc|ENSG00000185973|Q9NVH6-6|TMLHE	MULTI-MATCH	A375_MHC_IP_R2	2		1	829.383894	828.376617	-1.0774	-0.00089355	0.10744	8.9109E-05	-0.96993	-0.00080444	829.3839254537062	58.36	0.40812	59.109	58.879	59.287	0.74894	0.020523	0.00011262	NaN	26.341	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2185000	+		56206	27418	40894	41222							-0.044436057505663484
TVHHFREAM	9	Unmodified	_TVHHFREAM_					0	0	0			REV__ENST00000382162.7_1_22:31904270-32000328:+|nuORF	REV__ENST00000382162.7_1_22:31904270-32000328:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	377.24908447265625	3	376.518676	1126.5342	-0.038272	-1.441E-05	1.3837	0.000521	1.3455	0.00050659	376.52035726464055	24.193	0.25369	24.837	24.653	24.907	0.64368					5	4	2	0	0	0	0.77834	1	7822	7822		1.0715	0	1	821190	+		56207	22344	40895	41223	54903	54903					-0.024008494828649418
TVHIGDLQK	9	Unmodified	_TVHIGDLQK_					0	0	0			REV__nc|ENSG00000172349|Q14005-2|IL16	REV__nc|ENSG00000172349|Q14005-2|IL16	MULTI-SECPEP	A375_MHC_IP_R1	1	505.6690673828125	2	505.785099	1009.55564	-0.13518	-6.8373E-05	-0.58806	-0.00029743	-0.72325	-0.00036581	505.78476251814715	48.038	0.50483	48.038	47.718	48.223	0					14	9	2	0	0	0	0.63327	1	16840	16840		18.146	0	1	2420800	+		56208	21137	40896	41224	54904	54904					0.05124858817521272
TVHIHPQA	8	Unmodified	_TVHIHPQA_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	A375_MHC_IP_R2	2	451.68243408203125	2	451.745776	901.477	-0.48295	-0.00021817	0.37747	0.00017052	-0.10548	-4.7648E-05	451.74577355055277	34.939	0.50499	35.703	35.525	36.03	0.76338					11	9	2	0	0	0	0.75805	1	12759	12759		18.135	2.2878	1	1245600			56209	1846	40897	41225	54905	54905					0.02232051303087701
TVHIHPQA	8	Unmodified	_TVHIHPQA_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MATCH	A375_MHC_IP_R1	1		2	451.745776	901.477	0.031724	1.4331E-05	0.27602	0.00012469	0.30774	0.00013902	451.7458037311908	35.753	0.46	35.753	35.522	35.982	0	0.025452	-6.2104E-05	NaN	18.135	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1706100			56210	1846	40897	41225							0.02232051303087701
TVHLLKKKL	9	Unmodified	_TVHLLKKKL_					0	0	0		ENSG00000255398|ENST00000528880|HCAR3	ENSG00000255398|ENST00000528880|HCAR3	ENSG00000255398|ENST00000528880|HCAR3	MULTI-SECPEP	A375_MHC_IP_R2	2	539.6669921875	2	540.368601	1078.72265	-0.8353	-0.00045137	-2.1399	-0.0011563	-2.9752	-0.0016077	540.3676497175685	75.899	0.30524	76.639	76.385	76.691	0.74052					6	5	2	0	0	0	0.78348	1	28741	28741		7.9102	0	1	2852200			56211	9891	40898	41226	54906	54906					0.18643751433069156
TVHLSYDY	8	Unmodified	_TVHLSYDY_					0	0	0			REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1	REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1	MSMS	A375_MHC_IP_R1	1	499.1665954589844	2	499.234907	996.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.727	1	38.727	38.227	39.227	0								0	0	0	0.16876	1	13165	13165		14.582	0	1		+		56212	28781	40899	41227	54907	54907					-0.043107982361448194
TVHPILKAS	9	Unmodified	_TVHPILKAS_					0	0	0			REV__nc|ENSG00000165185|Q8N8K9-2|KIAA1958	REV__nc|ENSG00000165185|Q8N8K9-2|KIAA1958	MULTI-SECPEP	A375_MHC_IP_R1	1	483.65765380859375	2	483.292559	964.570566	-0.37053	-0.00017907	-0.27808	-0.00013439	-0.6486	-0.00031346	483.2925365752503	40.207	0.20425	40.207	40.05	40.254	0					5	3	2	0	0	0	0.71541	1	13804	13804		7.2892	0	1	613150	+		56213	27331	40900	41228	54908	54908					0.08686350685513844
TVHPKPKIR	9	Unmodified	_TVHPKPKIR_					0	0	0		ENSG00000052749|ENST00000370992|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12	ENSG00000052749|ENST00000370992|RRP12	ENSG00000052749|ENST00000370992|RRP12	MSMS	A375_MHC_IP_R2	2	359.4283447265625	3	359.229342	1074.6662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.148	1	50.902	50.402	51.402	0.75406								0	0	0	0.15486	1	18858	18858		2.2828	0	1				56214	1240	40901	41229	54909	54909					0.13185123596394988
TVHYHSIKI	9	Unmodified	_TVHYHSIKI_					0	0	0			REV__tr|U7T1Z7|U7T1Z7_FUSNUDUF3290domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00700PE=4SV=1	REV__tr|U7T1Z7|U7T1Z7_FUSNUDUF3290domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00700PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	366.9415283203125	3	366.541586	1096.60293	-0.13566	-4.9723E-05	-0.22856	-8.3775E-05	-0.36421	-0.0001335	366.54165791199387	38.193	0.51067	38.193	37.913	38.423	0					14	9	2	0	0	0	0.60917	1	12949	12949		9.544	0	1	4583000	+		56215	28710	40902	41230	54910	54910					0.058491380885243416
TVIAGVDPLL	10	Unmodified	_TVIAGVDPLL_					0	0	0			REV__ENST00000471049.5_1_10:99197505-99205308:-|nuORF	REV__ENST00000471049.5_1_10:99197505-99205308:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	499.69970703125	2	499.30005	996.585547	-0.32613	-0.00016284	0.16918	8.447E-05	-0.15695	-7.8366E-05	499.29985410634873	102.09	1.0615	102.09	101.65	102.71	0					28	20	2	0	0	0	0.32951	1	37524	37524		46.021	0	1	1590000	+		56216	21058	40903	41231	54911	54911					0.08711797762850892
TVIAIPIQEFA	11	Unmodified	_TVIAIPIQEFA_					0	0	0			REV__tr|U7T6I0|U7T6I0_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00244PE=4SV=1	REV__tr|U7T6I0|U7T6I0_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00244PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	401.63238525390625	3	401.232418	1200.67542	-0.038094	-1.5285E-05	-0.13596	-5.4552E-05	-0.17406	-6.9837E-05	401.23225173600554	31.762	0.25426	32.499	32.35	32.605	0.73691					7	4	2	0	0	0	0.99332	1	11278	11278		11.065	11.065	1	2215000	+		56217	28862	40904	41232	54912	54912					0.08311427371427271
TVIAIPIQEFA	11	Unmodified	_TVIAIPIQEFA_					0	0	0			REV__tr|U7T6I0|U7T6I0_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00244PE=4SV=1	REV__tr|U7T6I0|U7T6I0_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00244PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		3	401.232418	1200.67542	-0.56705	-0.00022752	0.12591	5.052E-05	-0.44114	-0.000177	401.23236321626445	32.643	0.50359	32.643	32.383	32.887	0	0.072205	0.00019657	NaN	11.065	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2082000	+		56218	28862	40904	41232							0.08311427371427271
TVIAKVNNV	9	Unmodified	_TVIAKVNNV_					0	0	0		nc|ENSG00000113407|P26639-2|TARS1;ENSG00000113407|ENST00000265112|TARS1	nc|ENSG00000113407|P26639-2|TARS1	nc|ENSG00000113407|P26639-2|TARS1	MULTI-MSMS	A375_MHC_IP_R1	1	479.6897277832031	2	479.290017	956.565481	-0.43774	-0.00020981	0.05633	2.6999E-05	-0.38141	-0.00018281	479.28995942431555	34.021	0.60881	34.021	33.848	34.456	0					20	11	3	0	0	0	0.054426	1	11176	11176		62.573	14.824	1	8546100			56219	3150	40905	41233	54913	54913					0.0854604682289164
TVIEEKSLV	9	Unmodified	_TVIEEKSLV_					0	0	0		nc|ENSG00000102606|Q14155-1|ARHGEF7;nc|ENSG00000102606|Q14155-5|ARHGEF7;ENSG00000102606|ENST00000646102|ARHGEF7	nc|ENSG00000102606|Q14155-1|ARHGEF7	nc|ENSG00000102606|Q14155-1|ARHGEF7	MULTI-SECPEP	A375_MHC_IP_R1	1	509.6946105957031	2	509.294965	1016.57538	-0.35882	-0.00018275	-0.023291	-1.1862E-05	-0.38211	-0.00019461	509.2949026974402	79.426	0.61682	79.426	79.161	79.778	0					15	11	2	0	0	0	0.35487	1	29028	29028		43.858	5.6827	1	1753500			56220	2386	40906	41234	54914	54914					0.06775190037615175
TVIEGEFVTL	10	Unmodified	_TVIEGEFVTL_					0	0	0		TTN|p.S959F|1|0.26|ENSG00000155657|chr2:178783030-178783030|G/A|missense_variant	TTN|p.S959F|1|0.26|ENSG00000155657|chr2:178783030-178783030|G/A|missense_variant	TTN|p.S959F|1|0.26|ENSG00000155657|chr2:178783030-178783030|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	554.6996459960938	2	554.300247	1106.58594	-0.69892	-0.00038741	-0.10939	-6.0637E-05	-0.80831	-0.00044805	554.300125726876	88.994	0.60399	89.726	89.431	90.035	0.7318					18	11	2	0	0	0	0.092645	1	33870	33870		65.235	2.6623	1	3728100			56221	30097	40907	41235	54915	54915					0.03691172692060718
TVIEGVNDRAE	11	Unmodified	_TVIEGVNDRAE_					0	0	0		ENSG00000128833|ENST00000261839|MYO5C;nc|ENSG00000128833|Q9NQX4-2|MYO5C;ENST00000560809.5_1_15:52557394-52562028:-|nuORF;ENST00000558902.5_1_15:52548900-52571163:-|nuORF	ENSG00000128833|ENST00000261839|MYO5C;ENST00000558902.5_1_15:52548900-52571163:-|nuORF	ENSG00000128833|ENST00000261839|MYO5C	MULTI-SECPEP	A375_MHC_IP_R1	1	401.9884948730469	3	401.53857	1201.59388	-0.32478	-0.00013041	2.6315	0.0010567	2.3068	0.00092625	401.5394788546512	36.142	0.30389	36.142	35.932	36.236	0					7	5	2	0	0	0	0.99252	1	12040	12040		11.631	3.1871	1	753310			56222	4166;13476	40908	41236	54916	54916					0.001146999415141181
TVIEKTESW	9	Unmodified	_TVIEKTESW_					0	0	0		ENSG00000197345|ENST00000362034|MRPL21;nc|ENSG00000197345|Q7Z2W9-2|MRPL21	ENSG00000197345|ENST00000362034|MRPL21	ENSG00000197345|ENST00000362034|MRPL21	MULTI-MSMS	A375_MHC_IP_R1	1	547.1820068359375	2	546.782222	1091.54989	-0.5217	-0.00028526	0.41885	0.00022902	-0.10285	-5.6236E-05	546.7823655070833	43.975	0.51017	43.975	43.757	44.267	0					16	9	2	0	0	0	0.12748	1	15337	15337		45.74	9.6129	1	1736500			56223	9147	40909	41237	54917	54917					0.007777155151643456
TVIEKTESW	9	Unmodified	_TVIEKTESW_					0	0	0		ENSG00000197345|ENST00000362034|MRPL21;nc|ENSG00000197345|Q7Z2W9-2|MRPL21	ENSG00000197345|ENST00000362034|MRPL21	ENSG00000197345|ENST00000362034|MRPL21	MULTI-MATCH	A375_MHC_IP_R2	2		2	546.782222	1091.54989	-0.66847	-0.00036551	-0.36155	-0.00019769	-1.03	-0.0005632	546.7820712584502	43.22	0.45626	43.992	43.724	44.181	0.7724	0.008614	-0.00051228	NaN	45.74	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1930600			56224	9147	40909	41237							0.007777155151643456
TVIENIHTI	9	Unmodified	_TVIENIHTI_					0	0	0		ENSG00000162402|ENST00000294383|USP24;USP24|p.K1184Mfs*22|1|0.08|ENSG00000162402|chr1:55129543-55129561|TCAGCTGTTGGCATGAGTT/-|frameshift_variant	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-SECPEP	A375_MHC_IP_R1	1	520.6924438476562	2	520.292756	1038.57096	-0.54993	-0.00028612	-0.098571	-5.1286E-05	-0.6485	-0.00033741	520.2926795965766	59.117	0.35799	59.117	58.887	59.245	0					9	6	2	0	0	0	0.56537	1	21269	21269		29.082	1.4528	1	1615100			56225	6526	40910	41238	54918	54918					0.053217256147036096
TVIFIITKCLF	11	Unmodified	_TVIFIITKCLF_					0	0	0		nc|ENSG00000156096|P06133-2|UGT2B4;ENSG00000156096|ENST00000305107|UGT2B4	nc|ENSG00000156096|P06133-2|UGT2B4	nc|ENSG00000156096|P06133-2|UGT2B4	MSMS	A375_MHC_IP_R2	2	433.2850646972656	3	433.257799	1296.75157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.12	1	143.15	142.65	143.65	0.030731								0	0	0	0.16334	1	55939	55939		1.3296	0	1				56226	6172	40911	41239	54919	54919					0.11506107947184319
TVIHPKARII	10	Unmodified	_TVIHPKARII_					0	0	0		ENST00000522540.5_1_8:30013899-30034753:+|nuORF;ENSG00000104671|ENST00000221114|DCTN6	ENST00000522540.5_1_8:30013899-30034753:+|nuORF	ENST00000522540.5_1_8:30013899-30034753:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	383.91888427734375	3	383.248514	1146.72371	0.14989	5.7446E-05	-0.060847	-2.332E-05	0.089044	3.4126E-05	383.2484055433488	36.334	0.56002	36.334	36.084	36.644	0					24	10	3	0	0	0	0.70174	1	12198	12198		11.518	0.61892	1	8604800			56227	2525	40912	41240	54920	54920					0.15621965801983606
TVIHSADITF	10	Unmodified	_TVIHSADITF_					0	0	0		nc|ENSG00000111783|Q33E94-4|RFX4;ENST00000536688.5_1_12:106995054-107126892:+|nuORF;nc|ENSG00000111783|Q33E94-3|RFX4;ENSG00000111783|ENST00000392842|RFX4;nc|ENSG00000111783|Q33E94-2|RFX4	nc|ENSG00000111783|Q33E94-4|RFX4	nc|ENSG00000111783|Q33E94-4|RFX4	MULTI-SECPEP	A375_MHC_IP_R1	1	552.6533813476562	2	552.290214	1102.56587	-0.51848	-0.00028635	-1.1427	-0.00063108	-1.6611	-0.00091743	552.2896744377299	47.442	0.25261	47.442	47.315	47.567	0					6	4	2	0	0	0	0.61429	1	16664	16664		24.021	5.8856	1	1415800			56228	3026	40913	41241	54921	54921					0.018694217520760503
TVIHSADITF	10	Unmodified	_TVIHSADITF_					0	0	0		nc|ENSG00000111783|Q33E94-4|RFX4;ENST00000536688.5_1_12:106995054-107126892:+|nuORF;nc|ENSG00000111783|Q33E94-3|RFX4;ENSG00000111783|ENST00000392842|RFX4;nc|ENSG00000111783|Q33E94-2|RFX4	nc|ENSG00000111783|Q33E94-4|RFX4	nc|ENSG00000111783|Q33E94-4|RFX4	MULTI-MATCH	A375_MHC_IP_R2	2		2	552.290214	1102.56587	-0.62789	-0.00034678	-1.1343	-0.00062646	-1.7622	-0.00097324	552.2893322689677	46.625	0.25603	47.391	47.21	47.466	0.76519	-0.025477	3.1506E-06	NaN	24.021	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1748300			56229	3026	40913	41241							0.018694217520760503
TVIILACLGF	10	Unmodified	_TVIILACLGF_					0	0	0		nc|ENSG00000189013|Q99706-6|KIR2DL4;nc|ENSG00000189013|Q99706-5|KIR2DL4;nc|ENSG00000189013|Q99706-4|KIR2DL4;ENSG00000189013|ENST00000345540|KIR2DL4;nc|ENSG00000189013|Q99706-2|KIR2DL4;nc|ENSG00000189013|Q99706|KIR2DL4	nc|ENSG00000189013|Q99706-6|KIR2DL4	nc|ENSG00000189013|Q99706-6|KIR2DL4	MULTI-SECPEP	A375_MHC_IP_R1	1	525.1474609375	2	525.306821	1048.59909	-0.31743	-0.00016675	1.777	0.00093346	1.4595	0.00076671	525.3075236166719	71.354	0.60803	71.354	71.057	71.665	0					15	11	2	0	0	0	0.80715	1	25949	25949		16.942	0	1	2800800			56230	8953	40914	41242	54922	54922					0.07673332270428546
TVIKKLKVFVK	11	Unmodified	_TVIKKLKVFVK_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	MSMS	A375_MHC_IP_R1	1	651.9552001953125	2	651.947216	1301.87988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.69	1	109.69	109.19	110.19	0								0	0	0	0.16354	1	40228	40228		0.30703	0.30703	1		+		56231	21924	40915	41243	54923	54923					0.24101411252581784
TVINFKIIV	9	Unmodified	_TVINFKIIV_					0	0	0		ADGRB3|p.S785F|1|0.16|ENSG00000135298|chr6:69062954-69062954|C/T|missense_variant	ADGRB3|p.S785F|1|0.16|ENSG00000135298|chr6:69062954-69062954|C/T|missense_variant	ADGRB3|p.S785F|1|0.16|ENSG00000135298|chr6:69062954-69062954|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1769409179688	2	523.83406	1045.65357	-0.54325	-0.00028457	0.36271	0.00019	-0.18055	-9.4576E-05	523.8341860815008	53.356	0.25459	53.356	53.199	53.453	0					8	4	2	0	0	0	0.62767	1	19030	19030		11.64	3.7301	1	1448100			56232	68	40916	41244	54924	54924					0.1325666741349778
TVINFKIIV	9	Unmodified	_TVINFKIIV_					0	0	0		ADGRB3|p.S785F|1|0.16|ENSG00000135298|chr6:69062954-69062954|C/T|missense_variant	ADGRB3|p.S785F|1|0.16|ENSG00000135298|chr6:69062954-69062954|C/T|missense_variant	ADGRB3|p.S785F|1|0.16|ENSG00000135298|chr6:69062954-69062954|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1768188476562	2	523.83406	1045.65357	-0.94436	-0.00049469	0.30841	0.00016155	-0.63595	-0.00033313	523.8339867611471	52.357	0.40279	53.109	52.882	53.285	0.75225					11	7	2	0	0	0	0.75466	1	19798	19798		4.3292	2.6766	1	2213200			56233	68	40916	41244	54925	54925					0.1325666741349778
TVIPKKKLEY	10	Unmodified	_TVIPKKKLEY_					0	0	0			REV__nc|ENSG00000146463|Q5VZL5-2|ZMYM4	REV__nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MSMS	A375_MHC_IP_R1	1	610.0269775390625	2	609.876456	1217.73836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.73	1	146.73	146.23	147.23	0								0	0	0	0.15629	1	56125	56125		0.40072	0	1		+		56234	19539	40917	41245	54926	54926					0.13819993159472688
TVIQRDFFPD	10	Unmodified	_TVIQRDFFPD_					0	0	0		ENST00000472073.1_1_22:19121711-19131632:-|nuORF;ENSG00000100056|ENST00000252137|ESS2	ENST00000472073.1_1_22:19121711-19131632:-|nuORF	ENST00000472073.1_1_22:19121711-19131632:-|nuORF	MSMS	A375_MHC_IP_R1	1	619.0783081054688	2	619.31422	1236.61389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.05	1	104.05	103.55	104.55	0								0	0	0	0.15435	1	38207	38207		6.7232	0.51738	1				56235	2108	40918	41246	54927	54927					0.005044956721349081
TVIRTSLV	8	Unmodified	_TVIRTSLV_					0	0	0		nc|ENSG00000111877|Q9NXL9-3|MCM9;nc|ENSG00000111877|Q9NXL9-2|MCM9;ENSG00000111877|ENST00000619706|MCM9	nc|ENSG00000111877|Q9NXL9-3|MCM9	nc|ENSG00000111877|Q9NXL9-3|MCM9	MULTI-MSMS	A375_MHC_IP_R2	2	445.29937744140625	2	444.779285	887.544017	-0.30716	-0.00013662	0.4779	0.00021256	0.17073	7.5939E-05	444.7794147378414	69.934	0.50848	70.668	70.386	70.895	0.73421					22	9	3	0	0	0	0.74945	1	26573	26573		20.454	0	1	7239700			56236	3037	40919	41247	54928	54928					0.09574661794204076
TVIRTTYKATR	11	Unmodified	_TVIRTTYKATR_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R2	2	655.78173828125	2	655.382968	1308.75138	-0.66719	-0.00043727	-0.77412	-0.00050734	-1.4413	-0.00094461	655.3823207985512	142.07	1.9906	142.1	140.9	142.89	0.030731					54	38	2	0	0	0	0.73672	1	55481	55481		2.4985	2.4985	1	1488900			56237	6151;14694	40920	41248	54929	54929					0.10935824271541605
TVISNSGSEW	10	Unmodified	_TVISNSGSEW_					0	0	0			REV__ENST00000533770.5_1_11:9861043-10215451:-|nuORF	REV__ENST00000533770.5_1_11:9861043-10215451:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	539.6531372070312	2	540.253828	1078.4931	-0.92853	-0.00050164	0.25554	0.00013805	-0.67299	-0.00036359	540.2545419199996	55.51	0.71048	56.261	55.779	56.489	0.75075					16	13	2	0	0	0	0.69306	1	20985	20985		13.906	0	1	1526300	+		56238	18736	40921	41249	54930	54930					-0.04300332041339061
TVISRPEQF	9	Unmodified	_TVISRPEQF_					0	0	0			REV__nc|ENSG00000163946|Q9UK61-3|TASOR	REV__nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	A375_MHC_IP_R2	2	359.9288330078125	3	359.529346	1075.56621	-0.58071	-0.00020878	-0.034728	-1.2486E-05	-0.61544	-0.00022127	359.5292182887335	24.64	0.8132	25.283	25.06	25.873	0.64368					39	15	3	0	0	0	0.54799	1	8117	8117		17.443	0	1	29319000	+		56239	20429	40922	41250	54931	54931					0.03144841471953441
TVISRPEQF	9	Unmodified	_TVISRPEQF_					0	0	0			REV__nc|ENSG00000163946|Q9UK61-3|TASOR	REV__nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	359.529346	1075.56621	0.098901	3.5558E-05	-0.022152	-7.9644E-06	0.076749	2.7593E-05	359.52912809697557	25.277	0.76186	25.277	25.104	25.866	0	-0.0031127	8.0223E-06	NaN	17.443	46	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26411000	+		56240	20429	40922	41250							0.03144841471953441
TVITHNPSF	9	Unmodified	_TVITHNPSF_					0	0	0			REV__ENSG00000255012|ENST00000641076|OR5M1	REV__ENSG00000255012|ENST00000641076|OR5M1	MULTI-SECPEP	A375_MHC_IP_R1	1	508.2976379394531	2	508.263999	1014.51345	-0.40175	-0.00020419	-4.352	-0.0022119	-4.7537	-0.0024161	508.26244096338314	63.885	0.30523	63.885	63.735	64.04	0					9	5	2	0	0	0	0.73363	1	23161	23161		10.824	0	1	548050	+		56241	22870	40923	41251	54932	54932					0.006768834091303688
TVITWGDPM	9	Unmodified	_TVITWGDPM_					0	0	0			REV__tr|U7SP30|U7SP30_FUSNUMethionineaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mapPE=3SV=1	REV__tr|U7SP30|U7SP30_FUSNUMethionineaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mapPE=3SV=1	MSMS	A375_MHC_IP_R1	1	510.2033996582031	2	510.24696	1018.47937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.73	1	115.73	115.23	116.23	0								0	0	0	0.15486	1	42445	42445		11.64	0	1		+		56242	28346	40924	41252	54933	54933					-0.02913281074131646
TVITWGDPM	9	Unmodified	_TVITWGDPM_					0	0	0			REV__tr|U7SP30|U7SP30_FUSNUMethionineaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mapPE=3SV=1	REV__tr|U7SP30|U7SP30_FUSNUMethionineaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mapPE=3SV=1	MSMS	A375_MHC_IP_R2	2	510.2037353515625	2	510.24696	1018.47937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.62	1	115.31	114.81	115.81	0.68999								0	0	0	0.15486	1	43204	43204		11.64	0	1		+		56243	28346	40924	41252	54934	54934					-0.02913281074131646
TVIWDNKTP	9	Unmodified	_TVIWDNKTP_					0	0	0		CR1|p.E157K|1|0.22|ENSG00000203710|chr1:207511636-207511636|G/A|missense_variant;ENST00000531844.5_1_1:207818578-207857361:+|nuORF;nc|ENSG00000197721|Q2VPA4-3|CR1L;ENSG00000197721|ENST00000508064|CR1L	CR1|p.E157K|1|0.22|ENSG00000203710|chr1:207511636-207511636|G/A|missense_variant	CR1|p.E157K|1|0.22|ENSG00000203710|chr1:207511636-207511636|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	537.4241943359375	2	537.284931	1072.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.365	1	34.117	33.617	34.617	0.75225								0	0	0	0.15486	1	11948	11948		10.824	1.4408	1				56244	657	40925	41253	54935	54935					0.021934390976412033
TVIWKEKV	8	Unmodified	_TVIWKEKV_					0	0	0		ENSG00000162722|ENST00000366481|TRIM58;TRIM58|p.K166N|1|0.25|ENSG00000162722|chr1:247860694-247860694|A/C|missense_variant;TRIM58|p.E176K|1|0.32|ENSG00000162722|chr1:247864714-247864714|G/A|missense_variant	ENSG00000162722|ENST00000366481|TRIM58	ENSG00000162722|ENST00000366481|TRIM58	MULTI-SECPEP	A375_MHC_IP_R1	1	501.2106018066406	2	501.80276	1001.59097	-0.39153	-0.00019647	-0.47362	-0.00023766	-0.86515	-0.00043414	501.8027948370189	40.941	0.75874	40.941	40.304	41.063	0					19	14	2	0	0	0	0.86765	1	13920	13920		18.135	1.1927	1	1024800			56245	6581	40926	41254	54936	54936					0.09023521345329755
TVKALRVRRLT	11	Unmodified	_TVKALRVRRLT_					0	0	0		ENSG00000170458|ENST00000302014|CD14	ENSG00000170458|ENST00000302014|CD14	ENSG00000170458|ENST00000302014|CD14	MSMS	A375_MHC_IP_R2	2	657.0042724609375	2	656.93042	1311.84629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.978	1	87.711	87.211	88.211	0.733								0	0	0	0.16307	1	33076	33076		2.7352	0	1				56246	7508	40927	41255	54937	54937					0.2028380253341311
TVKCEDCLVY	10	Unmodified	_TVKCEDCLVY_					0	0	0			REV__ENSG00000169884|ENST00000301061|WNT10B	REV__ENSG00000169884|ENST00000301061|WNT10B	MSMS	A375_MHC_IP_R2	2	586.7302856445312	2	586.769942	1171.52533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.895	1	78.638	78.138	79.138	0.74293								0	0	0	0.14673	1	29580	29580		24.021	2.2739	1		+		56247	20949	40928	41256	54938	54938					-0.05357003954213724
TVKEALKE	8	Unmodified	_TVKEALKE_					0	0	0		IGSF6|p.R93K|1|0.22|ENSG00000140749|chr16:21647282-21647282|C/T|missense_variant	IGSF6|p.R93K|1|0.22|ENSG00000140749|chr16:21647282-21647282|C/T|missense_variant	IGSF6|p.R93K|1|0.22|ENSG00000140749|chr16:21647282-21647282|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	459.6691589355469	2	459.26875	916.522947	-0.12852	-5.9025E-05	0.49097	0.00022549	0.36245	0.00016646	459.26890876345215	99.787	0.65903	100.55	100.32	100.98	0.76278					15	12	2	0	0	0	0.7256	1	37882	37882		26.884	2.8631	1	1206600			56248	14147	40929	41257	54939	54939					0.061346516946514384
TVKEALKE	8	Unmodified	_TVKEALKE_					0	0	0		IGSF6|p.R93K|1|0.22|ENSG00000140749|chr16:21647282-21647282|C/T|missense_variant	IGSF6|p.R93K|1|0.22|ENSG00000140749|chr16:21647282-21647282|C/T|missense_variant	IGSF6|p.R93K|1|0.22|ENSG00000140749|chr16:21647282-21647282|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	459.26875	916.522947	-0.20677	-9.4964E-05	0.013468	6.1852E-06	-0.1933	-8.8779E-05	459.2686735658749	100.76	0.40472	100.76	100.48	100.89	0	0.10633	-0.00023487	NaN	26.884	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	787520			56249	14147	40929	41257							0.061346516946514384
TVKERFVA	8	Unmodified	_TVKERFVA_					0	0	0			REV__ENST00000490362.1_1_2:217498183-217525611:+|nuORF	REV__ENST00000490362.1_1_2:217498183-217525611:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	475.6767272949219	2	475.276909	948.539266	-0.56433	-0.00026821	0.78688	0.00037398	0.22254	0.00010577	475.27693696474375	58.226	0.65902	58.226	57.822	58.481	0					25	12	3	0	0	0	0.90775	1	20934	20934		14.838	3.198	1	2934200	+		56250	17887	40930	41258	54940	54940					0.06293777651421806
TVKERFVA	8	Unmodified	_TVKERFVA_					0	0	0			REV__ENST00000490362.1_1_2:217498183-217525611:+|nuORF	REV__ENST00000490362.1_1_2:217498183-217525611:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	475.6767578125	2	475.276909	948.539266	-0.91072	-0.00043284	0.18977	9.0193E-05	-0.72095	-0.00034265	475.27691274538057	57.222	0.76579	57.971	57.762	58.528	0.74948					19	14	2	0	0	0	0.86263	1	21652	21652		26.884	3.7352	1	3368600	+		56251	17887	40930	41258	54941	54941					0.06293777651421806
TVKEVKKDL	9	Unmodified	_TVKEVKKDL_					0	0	0			REV__nc|ENSG00000183199|Q58FF7|HSP90AB3P	REV__nc|ENSG00000183199|Q58FF7|HSP90AB3P	MULTI-MSMS	A375_MHC_IP_R1	1	353.9366760253906	3	353.88513	1058.63356	0.0028439	1.0064E-06	-0.034982	-1.238E-05	-0.032138	-1.1373E-05	353.8850577247944	37.633	0.35818	37.633	37.454	37.812	0					10	6	2	0	0	0	0.68705	1	12641	12641		8.1555	8.1555	1	2222100	+		56252	27399	40931	41259	54942	54942					0.10658871682880999
TVKEVKKDL	9	Unmodified	_TVKEVKKDL_					0	0	0			REV__nc|ENSG00000183199|Q58FF7|HSP90AB3P	REV__nc|ENSG00000183199|Q58FF7|HSP90AB3P	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	353.88513	1058.63356	0.0028439	1.0064E-06	-0.034982	-1.238E-05	-0.032138	-1.1373E-05	353.8850577247944	37.633	0.35818	37.633	37.454	37.812	0	0.11757	-0.00020698	NaN	8.1555	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2222100	+		56253	27399	40931	41259							0.10658871682880999
TVKEVKKDL	9	Unmodified	_TVKEVKKDL_					0	0	0			REV__nc|ENSG00000183199|Q58FF7|HSP90AB3P	REV__nc|ENSG00000183199|Q58FF7|HSP90AB3P	MULTI-MATCH	A375_MHC_IP_R2	2		3	353.88513	1058.63356	-0.65457	-0.00023164	0.51673	0.00018286	-0.13785	-4.8782E-05	353.8853114184606	36.627	0.30631	37.398	37.258	37.564	0.7709	-0.11757	0.00037875	NaN	8.1555	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	726900	+		56254	27399	40931	41259							0.10658871682880999
TVKFLTKRF	9	Unmodified	_TVKFLTKRF_					0	0	0		nc|ENSG00000103710|Q9NYN1-2|RASL12;ENSG00000103710|ENST00000220062|RASL12	nc|ENSG00000103710|Q9NYN1-2|RASL12	nc|ENSG00000103710|Q9NYN1-2|RASL12	MULTI-MSMS	A375_MHC_IP_R1	1	380.2610168457031	3	380.569365	1138.68626	0.086618	3.2964E-05	-0.27575	-0.00010494	-0.18913	-7.1976E-05	380.903613804372	23.898	0.20342	23.898	23.787	23.991	0					6	3	2	0	0	0	0.74768	1	6637	6637		2.7352	0.23671	1	1207100			56255	2466	40932	41260	54943	54943					0.12246874536367613
TVKFYDEV	8	Unmodified	_TVKFYDEV_					0	0	0		PHF20|p.G123E|1|0.34|ENSG00000025293|chr20:35858329-35858329|G/A|missense_variant	PHF20|p.G123E|1|0.34|ENSG00000025293|chr20:35858329-35858329|G/A|missense_variant	PHF20|p.G123E|1|0.34|ENSG00000025293|chr20:35858329-35858329|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	501.6924133300781	2	500.752933	999.491313	-0.51763	-0.0002592	0.0026087	1.3063E-06	-0.51502	-0.0002579	500.75291054542464	64.066	1.475	64.807	64.394	65.869	0.74022					54	28	3	0	0	0	0.75805	1	24380	24380		18.135	1.1927	1	3190500			56256	15167	40933	41261	54944	54944					-0.008453410592892396
TVKGYDAPTF	10	Unmodified	_TVKGYDAPTF_					0	0	0			REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	MULTI-SECPEP	A375_MHC_IP_R1	1	550.1640625	2	549.776939	1097.53933	-0.68567	-0.00037696	-0.80643	-0.00044336	-1.4921	-0.00082032	549.7767270809793	65.928	0.60791	65.928	65.565	66.173	0					16	11	2	0	0	0	0.88918	1	23844	23844		5.2969	0	1	796430	+		56257	18151	40934	41262	54945	54945					-0.0055426713927317905
TVKHKVKIL	9	Unmodified	_TVKHKVKIL_					0	0	0		PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant;nc|ENSG00000118482|Q92576-2|PHF3;ENSG00000118482|ENST00000262043|PHF3	PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant	PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	533.6714477539062	2	533.360776	1064.707	-0.53257	-0.00028405	0.18794	0.00010024	-0.34463	-0.00018381	533.3608156999366	62.685	0.45971	62.685	62.403	62.863	0					14	8	2	0	0	0	0.79713	1	22590	22590		6.2058	2.2614	1	1694400			56258	3542	40935	41263	54946	54946					0.17723464916048215
TVKISNYGW	9	Unmodified	_TVKISNYGW_					0	0	0		ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP	ENSG00000116161|ENST00000367679|CACYBP	ENSG00000116161|ENST00000367679|CACYBP	MULTI-SECPEP	A375_MHC_IP_R1	1	534.6801147460938	2	534.279649	1066.54475	-0.72806	-0.00038899	-0.87147	-0.00046561	-1.5995	-0.0008546	534.2791640261894	64.521	1.3744	64.521	64.242	65.616	0					42	26	2	0	0	0	0.077986	1	23320	23320		89.401	47.306	1	3591800			56259	3378	40936	41264	54947	54947					0.014134564432424668
TVKISNYGW	9	Unmodified	_TVKISNYGW_					0	0	0		ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP	ENSG00000116161|ENST00000367679|CACYBP	ENSG00000116161|ENST00000367679|CACYBP	MULTI-SECPEP	A375_MHC_IP_R2	2	534.678466796875	2	534.279649	1066.54475	-0.71191	-0.00038036	-0.49488	-0.0002644	-1.2068	-0.00064476	534.2791639315216	63.887	0.96713	64.627	64.292	65.259	0.74022					39	18	3	0	0	0	0.15736	1	24172	24172		70.332	32.358	1	4722700			56260	3378	40936	41264	54948	54948					0.014134564432424668
TVKKCSKN	8	Unmodified	_TVKKCSKN_					0	0	0			REV__ADAMTS15|p.G677V|1|0.41|ENSG00000166106|chr11:130471335-130471335|G/T|missense_variant	REV__ADAMTS15|p.G677V|1|0.41|ENSG00000166106|chr11:130471335-130471335|G/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	453.5982971191406	2	454.25512	906.495686	-0.48157	-0.00021875	0.86077	0.00039101	0.37921	0.00017226	454.2554151531817	90.871	0.40638	90.871	90.59	90.997	0					10	7	2	0	0	0	0.972	1	33425	33425		7.9102	2.6795	1	387960	+		56261	15322	40937	41265	54949	54949					0.03869844882626694
TVKKGPPV	8	Unmodified	_TVKKGPPV_					0	0	0		nc|ENSG00000172349|Q14005-4|IL16;nc|ENSG00000172349|Q14005-3|IL16;nc|ENSG00000172349|Q14005-2|IL16;ENSG00000172349|ENST00000683961|IL16	nc|ENSG00000172349|Q14005-4|IL16	nc|ENSG00000172349|Q14005-4|IL16	MULTI-SECPEP	A375_MHC_IP_R2	2	413.66302490234375	2	413.263271	824.511988	-0.34917	-0.0001443	0.16751	6.9226E-05	-0.18166	-7.5073E-05	413.2633348967675	28.307	0.30478	28.985	28.858	29.163	0.67857					7	5	2	0	0	0	0.972	1	9793	9793		2.5775	0	1	2413100			56262	7702	40938	41266	54950	54950					0.09271294111044881
TVKKGYYQMK	10	Unmodified	_TVKKGYYQMK_					0	0	0		nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	MSMS	A375_MHC_IP_R1	1	415.92547607421875	3	415.893519	1244.65873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.494	1	44.494	43.994	44.994	0								0	0	0	0.15287	1	15526	15526		11.518	0	1				56263	6905	40939	41267	54951	54951					0.04618603213816641
TVKKLTKKI	9	Unmodified	_TVKKLTKKI_					0	0	0			REV__ECT2|p.S834L|1|0.41|ENSG00000114346|chr3:172815704-172815704|C/T|missense_variant	REV__ECT2|p.S834L|1|0.41|ENSG00000114346|chr3:172815704-172815704|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	353.60614013671875	3	353.581382	1057.72232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.48	1	40.48	39.98	40.98	0								0	0	0	0.15486	1	13914	13914		1.0715	0.10919	1		+		56264	16056	40940	41268	54952	54952					0.1957633171323323
TVKKTELYKKK	11	Unmodified	_TVKKTELYKKK_					0	0	0			REV__nc|ENSG00000122432|Q5VX52-4|SPATA1	REV__nc|ENSG00000122432|Q5VX52-4|SPATA1	MSMS	A375_MHC_IP_R1	1	683.4376831054688	2	683.426845	1364.83914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.217	1	96.217	95.717	96.717	0								0	0	0	0.16307	1	35362	35362		2.7352	1.4057	1		+		56265	18206	40941	41269	54953	54953					0.17131025142271028
TVKLERDELV	10	Unmodified	_TVKLERDELV_					0	0	0		ENST00000371953.7_1_10:89692859-89692916:+|nuORF	ENST00000371953.7_1_10:89692859-89692916:+|nuORF	ENST00000371953.7_1_10:89692859-89692916:+|nuORF	MSMS	A375_MHC_IP_R1	1	401.2840576171875	3	401.231077	1200.6714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.211	1	36.211	35.711	36.711	0								0	0	0	0.14483	1	12103	12103		18.721	0.85806	1				56266	11187	40942	41270	54954	54954					0.07909337877708822
TVKLPKAHSQ	10	Unmodified	_TVKLPKAHSQ_					0	0	0		nc|ENSG00000121440|Q9UPQ7-2|PDZRN3	nc|ENSG00000121440|Q9UPQ7-2|PDZRN3	nc|ENSG00000121440|Q9UPQ7-2|PDZRN3	MULTI-MSMS	A375_MHC_IP_R2	2	370.6204528808594	3	370.220624	1107.64004	-0.10941	-4.0505E-05	-0.6557	-0.00024276	-0.76511	-0.00028326	370.2201626900328	25.453	0.66153	26.096	25.873	26.535	0.64368					23	12	4	0	0	0	0.64017	1	8496	8496		17.863	8.3192	1	18413000			56267	14569	40943	41271	54955	54955					0.09052809634272307
TVKNVVAG	8	Unmodified	_TVKNVVAG_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	MSMS	A375_MHC_IP_R2	2	394.28363037109375	2	394.237253	786.459953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.094	1	54.845	54.345	55.345	0.75105								0	0	0	0.16876	1	20419	20419		15.847	1.0089	1		+		56268	20465	40944	41272	54956	54956					0.05818130697275592
TVKPRVRL	8	Unmodified	_TVKPRVRL_					0	0	0		nc|ENSG00000120915|P34913-3|EPHX2;nc|ENSG00000120915|P34913-2|EPHX2;ENSG00000120915|ENST00000521400|EPHX2;EPHX2|p.N359Ifs*43|1|0.12|ENSG00000120915|chr8:27525378-27525378|A/-|frameshift_variant;ENST00000520623.5_1_8:27348689-27396319:+|nuORF	nc|ENSG00000120915|P34913-3|EPHX2	nc|ENSG00000120915|P34913-3|EPHX2	MSMS	A375_MHC_IP_R2	2	484.8780822753906	2	484.821818	967.629084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.111	1	84.851	84.351	85.351	0.73962								0	0	0	0.16876	1	31971	31971		7.2892	0	1				56269	3699	40945	41273	54957	54957					0.14397452050650372
TVKPTARQ	8	Unmodified	_TVKPTARQ_					0	0	0			REV__TET1|p.P253S|1|0.19|ENSG00000138336|chr10:68573095-68573095|C/T|missense_variant	REV__TET1|p.P253S|1|0.19|ENSG00000138336|chr10:68573095-68573095|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	451.1666564941406	2	450.766709	899.518865	-0.57952	-0.00026123	0.28707	0.0001294	-0.29246	-0.00013183	450.76681914626823	37.581	0.30766	38.352	38.171	38.479	0.7709					12	5	3	0	0	0	0.73111	1	13760	13760		25.399	1.3787	1	4582500	+		56270	19085	40946	41274	54958	54958					0.06508606991610577
TVKPTARQ	8	Unmodified	_TVKPTARQ_					0	0	0			REV__TET1|p.P253S|1|0.19|ENSG00000138336|chr10:68573095-68573095|C/T|missense_variant	REV__TET1|p.P253S|1|0.19|ENSG00000138336|chr10:68573095-68573095|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	450.766709	899.518865	-0.57952	-0.00026123	0.28707	0.0001294	-0.29246	-0.00013183	450.76681914626823	37.581	0.30766	38.352	38.171	38.479	0.7709	-0.10233	5.7599E-06	NaN	25.399	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4582500	+		56271	19085	40946	41274							0.06508606991610577
TVKQTPNHIPS	11	Unmodified	_TVKQTPNHIPS_					0	0	0		ENSG00000173705|ENST00000309558|SUSD5	ENSG00000173705|ENST00000309558|SUSD5	ENSG00000173705|ENST00000309558|SUSD5	MULTI-MSMS	A375_MHC_IP_R1	1	408.2909240722656	3	407.891055	1220.65134	-0.28891	-0.00011785	-0.59418	-0.00024236	-0.88309	-0.00036021	407.89066541362155	19.577	0.61049	19.577	19.318	19.928	0					29	11	4	0	0	0	0.57984	1	4909	4909		20.411	1.2669	1	5337800			56272	7822	40947	41275	54959	54959					0.04983586937760265
TVKRKLLEE	9	Unmodified	_TVKRKLLEE_					0	0	0		nc|ENSG00000128487|Q5M775-5|SPECC1;nc|ENSG00000128487|Q5M775-3|SPECC1;nc|ENSG00000128487|Q5M775-2|SPECC1;nc|ENSG00000128487|Q5M775-4|SPECC1;ENSG00000128487|ENST00000395527|SPECC1;ENST00000472876.5_1_17:19912695-20140191:+|nuORF	nc|ENSG00000128487|Q5M775-5|SPECC1	nc|ENSG00000128487|Q5M775-5|SPECC1	MULTI-MSMS	A375_MHC_IP_R1	1	372.9642333984375	3	372.564279	1114.67101	0.42239	0.00015737	0.098229	3.6597E-05	0.52062	0.00019396	372.56417215222444	62.309	0.51146	62.309	62.046	62.557	0					19	9	3	0	0	0	0.76628	1	22543	22543		1.0715	0	1	1689100			56273	4137	40948	41276	54960	54960					0.11825962948501001
TVKRKLQVK	9	Unmodified	_TVKRKLQVK_					0	0	0			REV__ENSG00000151012|ENST00000280612|SLC7A11	REV__ENSG00000151012|ENST00000280612|SLC7A11	MULTI-SECPEP	A375_MHC_IP_R1	1	366.6448669433594	3	367.248514	1098.72371	0.015259	5.6038E-06	-2.0345	-0.00074716	-2.0192	-0.00074156	367.24771770667246	32.505	0.45328	32.505	32.383	32.836	0					11	8	2	0	0	0	0.46121	1	10596	10596		38.615	12.594	1	1284500	+		56274	19736	40949	41277	54961	54961					0.17829965801979597
TVKRPHGT	8	Unmodified	_TVKRPHGT_					0	0	0			REV__ENSG00000039319|ENST00000505560|ZFYVE16	REV__ENSG00000039319|ENST00000505560|ZFYVE16	MULTI-MSMS	A375_MHC_IP_R1	1	448.658935546875	2	448.259051	894.503549	-0.5763	-0.00025833	0.64476	0.00028902	0.068464	3.069E-05	448.2592592768822	122.1	0.50726	122.1	121.97	122.48	0					13	9	2	0	0	0	0.7779	1	45520	45520		2.5775	0	1	12868000	+		56275	16333	40950	41278	54962	54962					0.05207740194430244
TVKRPHGT	8	Unmodified	_TVKRPHGT_					0	0	0			REV__ENSG00000039319|ENST00000505560|ZFYVE16	REV__ENSG00000039319|ENST00000505560|ZFYVE16	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	448.259051	894.503549	-0.5763	-0.00025833	0.64476	0.00028902	0.068464	3.069E-05	448.2592592768822	122.1	0.50726	122.1	121.97	122.48	0	0	0	NaN	2.5775	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12868000	+		56276	16333	40950	41278							0.05207740194430244
TVKSTWFVSIH	11	Unmodified	_TVKSTWFVSIH_					0	0	0			REV__ENST00000495526.5_1_1:40207631-40211283:+|nuORF	REV__ENST00000495526.5_1_1:40207631-40211283:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	435.65802001953125	3	435.571434	1303.69247	-0.3174	-0.00013825	0.12008	5.2301E-05	-0.19732	-8.5947E-05	435.5715928384399	28.911	0.25138	28.911	28.745	28.996	0					9	4	3	0	0	0	0.73135	1	8935	8935		6.2344	3.6031	1	1515600	+		56277	25448	40951	41279	54963	54963					0.052773479772440623
TVKSTWFVSIH	11	Unmodified	_TVKSTWFVSIH_					0	0	0			REV__ENST00000495526.5_1_1:40207631-40211283:+|nuORF	REV__ENST00000495526.5_1_1:40207631-40211283:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	435.571434	1303.69247	-0.3174	-0.00013825	0.12008	5.2301E-05	-0.19732	-8.5947E-05	435.5715928384399	28.911	0.25138	28.911	28.745	28.996	0	0.049875	0.00025085	NaN	6.2344	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1515600	+		56278	25448	40951	41279							0.052773479772440623
TVKSTWFVSIH	11	Unmodified	_TVKSTWFVSIH_					0	0	0			REV__ENST00000495526.5_1_1:40207631-40211283:+|nuORF	REV__ENST00000495526.5_1_1:40207631-40211283:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	435.571434	1303.69247	-0.48494	-0.00021123	-0.26362	-0.00011483	-0.74857	-0.00032606	435.90551596007526	28.132	0.20286	28.811	28.706	28.909	0.67857	-0.049875	-0.00025053	NaN	6.2344	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2158200	+		56279	25448	40951	41279							0.052773479772440623
TVKTTKKYD	9	Unmodified	_TVKTTKKYD_					0	0	0			REV__ENSG00000136628|ENST00000366923|EPRS1	REV__ENSG00000136628|ENST00000366923|EPRS1	MULTI-SECPEP	A375_MHC_IP_R1	1	361.4471435546875	3	361.873001	1082.59717	0.54579	0.00019751	0.16052	5.8088E-05	0.70631	0.0002556	361.87294325052164	22.444	0.40751	22.444	22.216	22.623	0					11	7	2	0	0	0	0.8028	1	5966	5966		0.20686	0.066965	1	937760	+		56280	18949	40952	41280	54964	54964					0.05917994786182135
TVKVWFRNRQF	11	Unmodified	_TVKVWFRNRQF_					0	0	0		ARGFX|p.R130Q|1|0.17|ENSG00000186103|chr3:121586041-121586041|G/A|missense_variant	ARGFX|p.R130Q|1|0.17|ENSG00000186103|chr3:121586041-121586041|G/A|missense_variant	ARGFX|p.R130Q|1|0.17|ENSG00000186103|chr3:121586041-121586041|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	741.003173828125	2	740.912227	1479.8099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.67	1	125.97	125.47	126.47	0.2951								0	0	0	0.16213	1	49090	49090		7.609	4.0125	1				56281	169	40953	41281	54965	54965					0.08918925636680797
TVKWLFQR	8	Unmodified	_TVKWLFQR_					0	0	0		nc|ENSG00000001617|Q13275-2|SEMA3F;ENSG00000001617|ENST00000002829|SEMA3F	nc|ENSG00000001617|Q13275-2|SEMA3F	nc|ENSG00000001617|Q13275-2|SEMA3F	MSMS	A375_MHC_IP_R1	1	359.9490966796875	3	359.87831	1076.6131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.831	1	22.831	22.331	23.331	0								0	0	0	0.16876	1	6171	6171		8.7454	1.1365	1				56282	847	40954	41282	54966	54966					0.0778574581374869
TVKWVDVPR	9	Unmodified	_TVKWVDVPR_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MSMS	A375_MHC_IP_R1	1	367.2694396972656	3	367.213469	1098.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.478	1	55.478	54.978	55.978	0								0	0	0	0.15486	1	19842	19842		6.1918	0.46	1				56283	6242	40955	41283	54967	54967					0.07321424605561333
TVLAGTLLA	9	Unmodified	_TVLAGTLLA_					0	0	0			REV__ENSG00000171451|ENST00000310045|DSEL	REV__ENSG00000171451|ENST00000310045|DSEL	MULTI-MSMS	A375_MHC_IP_R2	2	858.5155639648438	1	858.529495	857.522219	-0.5328	-0.00045743	1.0632	0.00091275	0.53035	0.00045532	858.5305281031267	118.21	0.45616	118.82	118.59	119.05	0.60909					15	8	2	0	0	0	0.01574	1	44787	44787		88.904	0	1	19673000	+		56284	21064	40956	41284	54968	54968					0.08775857045611701
TVLAKRINI	9	Unmodified	_TVLAKRINI_					0	0	0			REV__ENSG00000109606|ENST00000336812|DHX15	REV__ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	A375_MHC_IP_R1	1	513.6663818359375	2	514.334759	1026.65496	-0.11835	-6.087E-05	-0.91932	-0.00047284	-1.0377	-0.00053371	514.3342836830128	45.246	0.35195	45.246	45.132	45.484	0					8	6	2	0	0	0	0.65246	1	15828	15828		6.7232	0	1	924170	+		56285	17584	40957	41285	54969	54969					0.14270301502256189
TVLAKRRLKI	10	Unmodified	_TVLAKRRLKI_					0	0	0		ENST00000371059.7_1_1:66038015-66038081:+|nuORF	ENST00000371059.7_1_1:66038015-66038081:+|nuORF	ENST00000371059.7_1_1:66038015-66038081:+|nuORF	MSMS	A375_MHC_IP_R1	1	599.5005493164062	2	599.411332	1196.80811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.17	1	108.17	107.67	108.67	0								0	0	0	0.15531	1	39686	39686		3.5965	0	1				56286	11163	40958	41286	54970	54970					0.21757916618730633
TVLAPDSMSR	10	Unmodified	_TVLAPDSMSR_					0	0	0		ENST00000454678.6_1_6:30166895-30168914:-|nuORF	ENST00000454678.6_1_6:30166895-30168914:-|nuORF	ENST00000454678.6_1_6:30166895-30168914:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	359.42822265625	3	359.518341	1075.53319	-0.30144	-0.00010837	0.52835	0.00018995	0.22691	8.1578E-05	359.5184905169665	44.621	0.56021	45.39	45.138	45.698	0.7691					25	10	3	0	0	0	0.71564	1	16582	16582		2.8433	0	1	7087100			56287	12111	40959	41287	54971	54971					-0.0015510864241150557
TVLASDDPYG	10	Unmodified	_TVLASDDPYG_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.N3444Tfs*24|1|0.36|ENSG00000164199|chr5:90728837-90728837|A/-|frameshift_variant;nc|ENSG00000164199|Q8WXG9-3|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	A375_MHC_IP_R1	1	519.090576171875	2	519.242929	1036.47131	-0.44104	-0.00022901	-0.010947	-5.6842E-06	-0.45199	-0.00023469	519.2428278716337	88.319	0.66261	88.319	88.052	88.714	0					16	12	2	0	0	0	0.92957	1	32388	32388		3.2813	3.2813	1	2202400			56288	6801	40960	41288	54972	54972					-0.04547136789915385
TVLDSAVYEH	10	Unmodified	_TVLDSAVYEH_					0	0	0		ENSG00000152208|ENST00000282020|GRID2;nc|ENSG00000152208|O43424-2|GRID2	ENSG00000152208|ENST00000282020|GRID2	ENSG00000152208|ENST00000282020|GRID2	MULTI-SECPEP	A375_MHC_IP_R1	1	566.6817626953125	2	567.277303	1132.54005	-0.4013	-0.00022765	0.27278	0.00015474	-0.12852	-7.2908E-05	567.2772529102427	61.05	0.51003	61.05	60.821	61.331	0					17	9	2	0	0	0	0.91909	1	21949	21949		9.3831	0	1	6635500			56289	5950	40961	41289	54973	54973					-0.020914724902013404
TVLDSNHTV	9	Unmodified	_TVLDSNHTV_					0	0	0		ENST00000514698.5_1_4:980866-997838:+|nuORF;ENSG00000127415|ENST00000514224|IDUA;nc|ENSG00000127415|P35475-2|IDUA	ENST00000514698.5_1_4:980866-997838:+|nuORF	ENST00000514698.5_1_4:980866-997838:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	493.65069580078125	2	493.251089	984.487624	-0.31866	-0.00015718	-0.17183	-8.4755E-05	-0.49049	-0.00024193	493.2508324500247	31.758	0.50985	31.758	31.514	32.024	0					20	9	3	0	0	0	0.061442	1	10209	10209		63.961	12.331	1	3413900			56290	4088	40962	41290	54974	54974					-0.005240108331349802
TVLEQSWRP	9	Unmodified	_TVLEQSWRP_					0	0	0			REV__ENSG00000172006|ENST00000317243|ZNF554	REV__ENSG00000172006|ENST00000317243|ZNF554	MULTI-SECPEP	A375_MHC_IP_R1	1	558.6845092773438	2	558.29583	1114.57711	-0.33496	-0.00018701	-0.53206	-0.00029705	-0.86703	-0.00048406	558.2953006059269	110.01	0.25488	110.01	109.83	110.09	0					7	4	2	0	0	0	0.53748	1	40362	40362		30.637	5.2372	1	593450	+		56291	21115	40963	41291	54975	54975					0.024402438462402642
TVLEQVLPI	9	Unmodified	_TVLEQVLPI_					0	0	0		nc|ENSG00000132002|P25685-2|DNAJB1;ENSG00000132002|ENST00000254322|DNAJB1	nc|ENSG00000132002|P25685-2|DNAJB1	nc|ENSG00000132002|P25685-2|DNAJB1	MULTI-MSMS	A375_MHC_IP_R1	1	506.7071533203125	2	506.307875	1010.6012	-0.0060385	-3.0574E-06	-0.73544	-0.00037236	-0.74148	-0.00037542	506.30742949801277	127.44	0.40434	127.44	127.27	127.67	0					16	7	3	0	0	0	0.026268	1	48854	48854		78.149	3.7266	1	23170000			56292	4366	40964	41292	54976	54976					0.09632084279917308
TVLEQVLPI	9	Unmodified	_TVLEQVLPI_					0	0	0		nc|ENSG00000132002|P25685-2|DNAJB1;ENSG00000132002|ENST00000254322|DNAJB1	nc|ENSG00000132002|P25685-2|DNAJB1	nc|ENSG00000132002|P25685-2|DNAJB1	MULTI-MSMS	A375_MHC_IP_R2	2	506.70867919921875	2	506.307875	1010.6012	-0.72961	-0.00036941	-0.2612	-0.00013225	-0.9908	-0.00050165	506.3076813638571	127.07	0.30356	127.34	127.16	127.46	0.26593					14	5	3	0	0	0	0.026268	1	49777	49777		78.149	3.7266	1	21799000			56293	4366	40964	41292	54977	54977					0.09632084279917308
TVLERVEGA	9	Unmodified	_TVLERVEGA_					0	0	0		ENST00000495205.1_1_1:201104793-201114281:-|nuORF;ENSG00000116857|ENST00000367330|TMEM9	ENST00000495205.1_1_1:201104793-201114281:-|nuORF	ENST00000495205.1_1_1:201104793-201114281:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	487.6689758300781	2	487.269281	972.52401	-0.37298	-0.00018174	0.34438	0.0001678	-0.0286	-1.3936E-05	487.269385984615	39.567	0.45549	39.567	39.289	39.744	0					14	8	2	0	0	0	0.39273	1	13523	13523		43.982	16.353	1	5943600			56294	3439	40965	41293	54978	54978					0.03664866063570571
TVLFERKR	8	Unmodified	_TVLFERKR_					0	0	0		NEU4|p.E16K|1|0.58|ENSG00000204099|chr2:241814530-241814530|G/A|missense_variant	NEU4|p.E16K|1|0.58|ENSG00000204099|chr2:241814530-241814530|G/A|missense_variant	NEU4|p.E16K|1|0.58|ENSG00000204099|chr2:241814530-241814530|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6260986328125	2	524.816733	1047.61891	-0.38211	-0.00020054	-0.055865	-2.9319E-05	-0.43797	-0.00022986	524.8169660026394	56.696	0.45765	56.696	56.447	56.905	0					12	8	2	0	0	0	0.972	1	20247	20247		13.508	0.97634	1	1034900			56295	14990	40966	41294	54979	54979					0.09700844325402613
TVLGFDGVKV	10	Unmodified	_TVLGFDGVKV_					0	0	0			REV__ENSG00000172071|ENST00000303236|EIF2AK3	REV__ENSG00000172071|ENST00000303236|EIF2AK3	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1805419921875	2	517.797675	1033.5808	-0.93775	-0.00048557	-1.2162	-0.00062977	-2.154	-0.0011153	517.7966484982292	37.938	0.25807	38.713	38.585	38.843	0.77451					6	4	2	0	0	0	0.8125	1	13880	13880		18.146	0	1	598620	+		56296	21119	40967	41295	54980	54980					0.06534913620089355
TVLGGLTPYL	10	Unmodified	_TVLGGLTPYL_					0	0	0			REV__ENST00000475742.5_1_6:31654991-31656600:-|nuORF	REV__ENST00000475742.5_1_6:31654991-31656600:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	517.6996459960938	2	517.30005	1032.58555	-0.6319	-0.00032688	-0.20255	-0.00010478	-0.83445	-0.00043166	517.3000879458997	80.996	0.56041	80.996	80.693	81.253	0					22	10	3	0	0	0	0.092743	1	29588	29588		71.134	6.8973	1	4161700	+		56297	25175	40968	41296	54981	54981					0.07055797762836846
TVLGGLTPYL	10	Unmodified	_TVLGGLTPYL_					0	0	0			REV__ENST00000475742.5_1_6:31654991-31656600:-|nuORF	REV__ENST00000475742.5_1_6:31654991-31656600:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	517.6995849609375	2	517.30005	1032.58555	-0.72417	-0.00037461	0.12886	6.666E-05	-0.59531	-0.00030795	517.3000039633956	80.057	0.55547	80.802	80.556	81.112	0.74474					27	10	3	0	0	0	0.11184	1	30399	30399		68.081	13.307	1	4494200	+		56298	25175	40968	41296	54982	54982					0.07055797762836846
TVLIDMKALAQ	11	Unmodified	_TVLIDMKALAQ_					0	0	0			REV__nc|ENSG00000137814|Q9NVX0-2|HAUS2	REV__nc|ENSG00000137814|Q9NVX0-2|HAUS2	MULTI-SECPEP	A375_MHC_IP_R1	1	401.9884948730469	3	401.565291	1201.67404	-0.24192	-9.7148E-05	1.1937	0.00047934	0.95176	0.00038219	401.56583823946255	36.078	0.40595	36.078	35.727	36.133	0					11	7	2	0	0	0	0.99482	1	12040	12040		6.2344	0	1	1125700	+		56299	19036	40969	41297	54983	54983					0.08127470011027071
TVLIIAFLLY	10	Unmodified	_TVLIIAFLLY_					0	0	0		ENSG00000141385|ENST00000269143|AFG3L2	ENSG00000141385|ENST00000269143|AFG3L2	ENSG00000141385|ENST00000269143|AFG3L2	MSMS	A375_MHC_IP_R2	2	583.6669921875	2	583.365193	1164.71583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.743	1	33.48	32.98	33.98	0.73692								0	0	0	0.1552	1	11682	11682		3.9444	0	1				56300	5234	40970	41298	54984	54984					0.14006393761860636
TVLILITLLKW	11	Unmodified	_TVLILITLLKW_					0	0	0			REV__ENST00000265827.7_1_7:127014698-127014806:-|nuORF	REV__ENST00000265827.7_1_7:127014698-127014806:-|nuORF	MSMS	A375_MHC_IP_R2	2	656.9296875	2	656.933774	1311.853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.464	1	84.203	83.703	84.703	0.73962								0	0	0	0.16302	1	31723	31723		2.9952	0.71247	1		+		56301	23256	40971	41299	54985	54985					0.20954302641393951
TVLIRHKII	9	Unmodified	_TVLIRHKII_					0	0	0		nc|ENSG00000158691|O43309-2|ZSCAN12;ENSG00000158691|ENST00000684592|ZSCAN12	nc|ENSG00000158691|O43309-2|ZSCAN12	nc|ENSG00000158691|O43309-2|ZSCAN12	MSMS	A375_MHC_IP_R2	2	546.9142456054688	2	546.866226	1091.7179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.704	1	80.449	79.949	80.949	0.74474								0	0	0	0.15486	1	30250	30250		4.756	0	1				56302	6323	40972	41300	54986	54986					0.17570867290305614
TVLKENGISF	10	Unmodified	_TVLKENGISF_					0	0	0		KDM4D|p.P260S|1|0.28|ENSG00000186280|chr11:94998150-94998150|C/T|missense_variant	KDM4D|p.P260S|1|0.28|ENSG00000186280|chr11:94998150-94998150|C/T|missense_variant	KDM4D|p.P260S|1|0.28|ENSG00000186280|chr11:94998150-94998150|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	554.7054443359375	2	554.305864	1106.59717	-0.969	-0.00053712	0.28894	0.00016016	-0.68006	-0.00037696	554.3060970914185	97.193	0.71093	97.949	97.62	98.331	0.75586					31	13	3	0	0	0	0.37864	1	36878	36878		45.7	0	1	6106300			56303	14204	40973	41301	54987	54987					0.04813994786195508
TVLKEQLKL	9	Unmodified	_TVLKEQLKL_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	MULTI-MSMS	A375_MHC_IP_R1	1	358.2972412109375	3	357.897258	1070.66995	0.076204	2.7273E-05	0.089808	3.2142E-05	0.16601	5.9415E-05	357.89720723909335	57.467	0.6622	57.467	57.211	57.873	0					25	12	3	0	0	0	0.6343	1	20628	20628		12.873	0.69786	1	6137000			56304	9013	40974	41302	54988	54988					0.1374374857962266
TVLLALVFLY	10	Unmodified	_TVLLALVFLY_					0	0	0			REV__tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1	REV__tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	575.6422119140625	2	576.357368	1150.70018	-0.16138	-9.301E-05	-2.8519	-0.0016437	-3.0133	-0.0017367	576.8579486751445	77.562	0.25127	77.562	77.336	77.588	0					5	4	2	0	0	0	0.92389	1	28286	28286		7.2892	0	1	961670	+		56305	28280	40975	41303	54989	54989					0.13086107244816958
TVLLGLFDTL	10	Unmodified	_TVLLGLFDTL_					0	0	0			REV__ENSG00000006638|ENST00000375190|TBXA2R	REV__ENSG00000006638|ENST00000375190|TBXA2R	MULTI-SECPEP	A375_MHC_IP_R2	2	546.1923217773438	2	546.320983	1090.62741	-0.69775	-0.0003812	2.7457	0.0015	2.048	0.0011188	546.326207280622	91.347	0.30392	92.082	91.868	92.172	0.7345					10	5	3	0	0	0	0.9269	1	34746	34746		10.824	0	1	666720	+		56306	16141	40976	41304	54990	54990					0.08572353451381787
TVLLLKKKKK	10	Unmodified	_TVLLLKKKKK_					0	0	0		ENST00000378289.8_1_10:14940166-14940367:-|nuORF	ENST00000378289.8_1_10:14940166-14940367:-|nuORF	ENST00000378289.8_1_10:14940166-14940367:-|nuORF	MSMS	A375_MHC_IP_R1	1	599.8765869140625	2	599.934109	1197.85366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.917	1	87.917	87.417	88.417	0								0	0	0	0.15622	1	32268	32268		1.4819	1.4819	1				56307	11312	40977	41305	54991	54991					0.26265142081092563
TVLLLKKKKKK	11	Unmodified	_TVLLLKKKKKK_					0	0	0		ENST00000378289.8_1_10:14940166-14940367:-|nuORF	ENST00000378289.8_1_10:14940166-14940367:-|nuORF	ENST00000378289.8_1_10:14940166-14940367:-|nuORF	MSMS	A375_MHC_IP_R2	2	663.9935913085938	2	663.98159	1325.94863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.79	1	124.12	123.62	124.62	0.32969								0	0	0	0.16337	1	47690	47690		1.1933	1.1933	1				56308	11312	40978	41306	54992	54992					0.29869075552278446
TVLLMKLKRK	10	Unmodified	_TVLLMKLKRK_					0	0	0			REV__ENST00000373222.3_1_20:40162013-40162172:-|nuORF	REV__ENST00000373222.3_1_20:40162013-40162172:-|nuORF	MSMS	A375_MHC_IP_R1	1	615.4545288085938	2	615.409943	1228.80533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.89	1	124.89	124.39	125.39	0								0	0	0	0.15435	1	47233	47233		6.7232	0	1		+		56309	24087	40979	41307	54993	54993					0.20008325169555974
TVLLMKLKRK	10	Unmodified	_TVLLMKLKRK_					0	0	0			REV__ENST00000373222.3_1_20:40162013-40162172:-|nuORF	REV__ENST00000373222.3_1_20:40162013-40162172:-|nuORF	MSMS	A375_MHC_IP_R1	1	615.3076782226562	2	615.409943	1228.80533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.93	1	124.93	124.43	125.43	0								0	0	0	0.15435	1	47278	47278		6.7232	0	1		+		56310	24087	40979	41307	54994	54994					0.20008325169555974
TVLLVLFFTRR	11	Unmodified	_TVLLVLFFTRR_					0	0	0			REV__ENST00000403097.5_1_7:50860326-50860620:-|nuORF	REV__ENST00000403097.5_1_7:50860326-50860620:-|nuORF	MSMS	A375_MHC_IP_R1	1	682.6069946289062	2	682.924272	1363.83399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.444	1	81.444	80.944	81.944	0								0	0	0	0.16339	1	29762	29762		1.0715	0	1		+		56311	24416	40980	41308	54995	54995					0.16662766070339785
TVLNRELLPS	10	Unmodified	_TVLNRELLPS_					0	0	0			REV__FCGR1A|p.G205R|1|0.13|ENSG00000150337|chr1:149790107-149790107|G/A|missense_variant	REV__FCGR1A|p.G205R|1|0.13|ENSG00000150337|chr1:149790107-149790107|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	381.5888977050781	3	381.224034	1140.65027	-0.46093	-0.00017572	0.92751	0.00035359	0.46658	0.00017787	381.22472528817264	25.184	0.35902	25.827	25.668	26.028	0.64368					9	6	2	0	0	0	0.83355	1	8313	8313		14.957	9.5545	1	1099300	+		56312	26625	40981	41309	54996	54996					0.08557372568861865
TVLPEALERW	10	Unmodified	_TVLPEALERW_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENSG00000068976|ENST00000164139|PYGM;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R1	1	607.7320556640625	2	607.332413	1212.65027	-0.27365	-0.0001662	0.34159	0.00020746	0.067944	4.1265E-05	607.3325154043554	98.05	0.86542	98.05	97.691	98.557	0					40	16	3	0	0	0	0.48176	1	35984	35984		39.213	17.623	1	5271400			56313	2241;2187	40982	41310	54997	54997					0.0524537256885651
TVLPEALERW	10	Unmodified	_TVLPEALERW_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENSG00000068976|ENST00000164139|PYGM;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R2	2	607.7316284179688	2	607.332413	1212.65027	-0.59506	-0.0003614	0.13929	8.4593E-05	-0.45577	-0.0002768	607.3322829963092	97.193	0.7114	97.949	97.67	98.381	0.75586					36	13	3	0	0	0	0.44533	1	36875	36875		42.312	18.523	1	8706500			56314	2241;2187	40982	41310	54998	54998					0.0524537256885651
TVLPFSATME	10	Unmodified	_TVLPFSATME_					0	0	0		ENSG00000171873|ENST00000379453|ADRA1D	ENSG00000171873|ENST00000379453|ADRA1D	ENSG00000171873|ENST00000379453|ADRA1D	MULTI-MSMS	A375_MHC_IP_R2	2	548.6599731445312	2	548.273175	1094.5318	-0.77554	-0.00042521	0.25769	0.00014128	-0.51785	-0.00028392	548.2732861917528	131.18	0.2536	131.36	131.24	131.49	0.18953					13	4	4	0	0	0	0.62155	1	51559	51559		19.257	2.3147	1	18256000			56315	7655	40983	41311	54999	54999					-0.011687427311699139
TVLPGEIQGW	10	Unmodified	_TVLPGEIQGW_					0	0	0		ENSG00000085644|ENST00000396878|ZNF213;ENST00000574928.5_1_16:3185143-3187740:+|nuORF	ENSG00000085644|ENST00000396878|ZNF213	ENSG00000085644|ENST00000396878|ZNF213	MULTI-MSMS	A375_MHC_IP_R2	2	550.6927490234375	2	550.292756	1098.57096	-0.63554	-0.00034973	0.47057	0.00025895	-0.16497	-9.078E-05	550.2926694839417	110.04	0.97094	110.78	110.37	111.34	0.73692					38	18	3	0	0	0	0.01042	1	41475	41475		118.07	46.146	1	4731100			56316	1816	40984	41312	55000	55000					0.025617256147143053
TVLPGELQSW	10	Unmodified	_TVLPGELQSW_					0	0	0		ENSG00000166261|ENST00000530393|ZNF202	ENSG00000166261|ENST00000530393|ZNF202	ENSG00000166261|ENST00000530393|ZNF202	MULTI-SECPEP	A375_MHC_IP_R1	1	565.69775390625	2	565.298039	1128.58152	-0.26316	-0.00014876	-0.11531	-6.5183E-05	-0.37847	-0.00021395	565.2979272666836	110.8	1.0245	110.8	110.49	111.52	0					29	19	2	0	0	0	0.060993	1	40621	40621		92.653	32.579	1	2214200			56317	7050	40985	41313	55001	55001					0.022377082691491523
TVLPGELQSW	10	Unmodified	_TVLPGELQSW_					0	0	0		ENSG00000166261|ENST00000530393|ZNF202	ENSG00000166261|ENST00000530393|ZNF202	ENSG00000166261|ENST00000530393|ZNF202	MULTI-MSMS	A375_MHC_IP_R2	2	565.69775390625	2	565.298039	1128.58152	-0.30536	-0.00017262	-0.48764	-0.00027566	-0.793	-0.00044828	565.2977226658222	110.08	0.7683	110.82	110.47	111.24	0.73691					22	14	2	0	0	0	0.0038254	1	41528	41528		99.755	33.299	1	1833800			56318	7050	40985	41313	55002	55002					0.022377082691491523
TVLQEPELNL	10	Unmodified	_TVLQEPELNL_					0	0	0		ENST00000557504.1_1_14:77718073-77723066:+|nuORF;ENSG00000165548|ENST00000298351|TMEM63C	ENST00000557504.1_1_14:77718073-77723066:+|nuORF	ENST00000557504.1_1_14:77718073-77723066:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	577.9564208984375	2	578.316428	1154.6183	-0.13827	-7.9962E-05	0.88265	0.00051045	0.74439	0.00043049	578.3169524402178	77.809	0.35838	77.809	77.537	77.895	0					11	6	2	0	0	0	0.89369	1	28390	28390		23.79	11.549	1	1836600			56319	6967	40986	41314	55003	55003					0.047179600950585154
TVLQNLYRFIH	11	Unmodified	_TVLQNLYRFIH_					0	0	0		nc|ENSG00000143194|Q96JY0-2|MAEL;ENSG00000143194|ENST00000367872|MAEL	nc|ENSG00000143194|Q96JY0-2|MAEL	nc|ENSG00000143194|Q96JY0-2|MAEL	MSMS	A375_MHC_IP_R1	1	702.294677734375	2	702.393336	1402.77212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.27	1	125.27	124.77	125.77	0								0	0	0	0.16203	1	47570	47570		8.1555	0	1				56320	5358	40987	41315	55004	55004					0.08684414651202133
TVLRAAAFA	9	Unmodified	_TVLRAAAFA_					0	0	0		ENSG00000261594|ENST00000562197|TPBGL	ENSG00000261594|ENST00000562197|TPBGL	ENSG00000261594|ENST00000562197|TPBGL	MULTI-SECPEP	A375_MHC_IP_R2	2	459.6560363769531	2	460.271627	918.528701	-0.35053	-0.00016134	0.26792	0.00012332	-0.082602	-3.802E-05	460.2717330973363	46.129	0.35386	46.895	46.704	47.058	0.76519					9	6	2	0	0	0	0.76187	1	17319	17319		7.2892	2.0586	1	1710500			56321	9940	40988	41316	55005	55005					0.0661779499697559
TVLRAFGSV	9	Unmodified	_TVLRAFGSV_					0	0	0		nc|ENSG00000133454|Q8IUG5-2|MYO18B;MYO18B|p.L2340Sfs*16|1|0.33|ENSG00000133454|chr22:26026991-26026991|A/-|frameshift_variant;ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B	nc|ENSG00000133454|Q8IUG5-2|MYO18B	nc|ENSG00000133454|Q8IUG5-2|MYO18B	MULTI-SECPEP	A375_MHC_IP_R1	1	475.122314453125	2	475.276909	948.539266	-0.50562	-0.00024031	0.20763	9.8684E-05	-0.29799	-0.00014163	475.27665707659617	50.739	0.55801	50.739	50.408	50.966	0					15	10	2	0	0	0	0.58271	1	17910	17910		10.074	0	1	1860500			56322	4511	40989	41317	55006	55006					0.06293777651433174
TVLREREV	8	Unmodified	_TVLREREV_					0	0	0		nc|ENSG00000172432|Q9BX10-2|GTPBP2;nc|ENSG00000172432|Q9BX10-4|GTPBP2;ENSG00000172432|ENST00000307126|GTPBP2	nc|ENSG00000172432|Q9BX10-2|GTPBP2	nc|ENSG00000172432|Q9BX10-2|GTPBP2	MULTI-MSMS	A375_MHC_IP_R1	1	502.19244384765625	2	501.290548	1000.56654	0.040667	2.0386E-05	-0.013379	-6.7069E-06	0.027288	1.3679E-05	501.2904445562053	114.39	5.9949	114.39	111.52	117.51	0					272	117	3	0	0	0	0.7479	1	41268	41268		20.871	0	1	35626000			56323	7711	40990	41318	55007	55007					0.06628261191804086
TVLREREV	8	Unmodified	_TVLREREV_					0	0	0		nc|ENSG00000172432|Q9BX10-2|GTPBP2;nc|ENSG00000172432|Q9BX10-4|GTPBP2;ENSG00000172432|ENST00000307126|GTPBP2	nc|ENSG00000172432|Q9BX10-2|GTPBP2	nc|ENSG00000172432|Q9BX10-2|GTPBP2	MULTI-MSMS	A375_MHC_IP_R2	2	501.1180419921875	2	501.290548	1000.56654	-0.3975	-0.00019926	0.057157	2.8652E-05	-0.34035	-0.00017061	501.2904638081066	114.09	5.6505	114.8	111.98	117.63	0.70984					264	110	4	0	0	0	0.75322	1	42269	42269		19.439	0.18201	1	35047000			56324	7711	40990	41318	55008	55008					0.06628261191804086
TVLRILPLVVL	11	Unmodified	_TVLRILPLVVL_					0	0	0		ENSG00000171049|ENST00000340023|FPR2	ENSG00000171049|ENST00000340023|FPR2	ENSG00000171049|ENST00000340023|FPR2	MSMS	A375_MHC_IP_R1	1	618.5819702148438	2	618.426116	1234.83768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.111	1	98.111	97.611	98.611	0								0	0	0	0.16354	1	36046	36046		0.30703	0	1				56325	7568	40991	41319	55009	55009					0.22965435844230342
TVLRLPAF	8	Unmodified	_TVLRLPAF_					0	0	0		ENST00000488170.5_1_3:160821302-160822604:-|nuORF	ENST00000488170.5_1_3:160821302-160822604:-|nuORF	ENST00000488170.5_1_3:160821302-160822604:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	459.1842956542969	2	458.78437	915.554188	-0.43234	-0.00019835	-0.12912	-5.9238E-05	-0.56146	-0.00025759	458.78429018909947	32.925	0.35651	33.662	33.468	33.825	0.73691					12	6	3	0	0	0	0.92636	1	11769	11769		11.64	0	1	3597500			56326	12611	40992	41320	55010	55010					0.09303269519409696
TVLSLFKNL	9	Unmodified	_TVLSLFKNL_					0	0	0			REV__ENST00000379887.8_2_15:72877639-72878143:+|nuORF	REV__ENST00000379887.8_2_15:72877639-72878143:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	518.2036743164062	2	517.815867	1033.61718	-0.68744	-0.00035597	0.032755	1.6961E-05	-0.65469	-0.00033901	517.8157763010031	41.959	0.40833	42.734	42.504	42.913	0.77451					14	7	2	0	0	0	0.67483	1	15648	15648		6.2058	0	1	2137300	+		56327	24206	40993	41321	55011	55011					0.10171790516801593
TVLSNAFVLT	10	Unmodified	_TVLSNAFVLT_					0	0	0		ENSG00000179546|ENST00000374619|HTR1D	ENSG00000179546|ENST00000374619|HTR1D	ENSG00000179546|ENST00000374619|HTR1D	MULTI-MSMS	A375_MHC_IP_R2	2	532.7516479492188	2	532.802957	1063.59136	-0.68631	-0.00036567	0.73924	0.00039387	0.052931	2.8202E-05	532.8032554474695	103.62	0.66144	104.38	104.04	104.7	0.76428					22	12	3	0	0	0	0.70442	1	39331	39331		16.149	1.3108	1	1593000			56328	8237	40994	41322	55012	55012					0.062108962745242025
TVLSPTLNP	9	Unmodified	_TVLSPTLNP_					0	0	0		ENSG00000256574|ENST00000553795|OR13A1	ENSG00000256574|ENST00000553795|OR13A1	ENSG00000256574|ENST00000553795|OR13A1	MULTI-MSMS	A375_MHC_IP_R1	1	471.6686096191406	2	471.26875	940.522947	-0.60243	-0.00028391	-0.040642	-1.9153E-05	-0.64307	-0.00030306	471.26875363005604	85.289	1.1162	85.289	84.955	86.072	0					54	21	4	0	0	0	0.32092	1	31477	31477		29.082	0	1	22678000			56329	9899	40995	41323	55013	55013					0.05030651694664812
TVLSRVNAQ	9	Unmodified	_TVLSRVNAQ_					0	0	0			REV__nc|ENSG00000185745|P09914-2|IFIT1	REV__nc|ENSG00000185745|P09914-2|IFIT1	MULTI-MSMS	A375_MHC_IP_R2	2	494.68267822265625	2	494.282723	986.550893	-0.43457	-0.0002148	-0.088275	-4.3633E-05	-0.52284	-0.00025843	494.2826787923699	119.51	0.71276	120.05	119.79	120.5	0.5321					22	13	2	0	0	0	0.6656	1	45547	45547		10.074	1.4806	1	11571000	+		56330	21916	40996	41324	55014	55014					0.057079746747604077
TVLSVNQSMD	10	Unmodified	_TVLSVNQSMD_					0	0	0			REV__ENST00000472176.1_1_6:44197340-44197857:+|nuORF	REV__ENST00000472176.1_1_6:44197340-44197857:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	546.6810913085938	2	547.263339	1092.51212	-0.86052	-0.00047093	-4.4698	-0.0024461	-5.3303	-0.0029171	547.2629330436394	32.909	0.25414	33.646	33.468	33.722	0.73692					7	4	2	0	0	0	0.90513	1	11711	11711		8.1555	1.9497	1	1550400	+		56331	17753	40997	41325	55015	55015					-0.030431187419026173
TVLTEHVAAA	10	Unmodified	_TVLTEHVAAA_					0	0	0		nc|ENSG00000112667|O43598-2|DNPH1;ENSG00000112667|ENST00000230431|DNPH1	nc|ENSG00000112667|O43598-2|DNPH1	nc|ENSG00000112667|O43598-2|DNPH1	MULTI-MSMS	A375_MHC_IP_R1	1	506.67706298828125	2	506.277106	1010.53966	-0.62116	-0.00031448	0.38478	0.0001948	-0.23638	-0.00011967	506.27733192891435	66.807	2.0841	66.807	65.871	67.955	0					78	40	5	0	0	0	0.55789	1	24372	24372		24.021	2.4836	1	68242000			56332	3100	40998	41326	55016	55016					0.034811525806162535
TVLTNYTLPK	10	Unmodified	_TVLTNYTLPK_					0	0	0			REV__ENSG00000188394|ENST00000616002|GPR21	REV__ENSG00000188394|ENST00000616002|GPR21	MULTI-MSMS	A375_MHC_IP_R2	2	383.2809753417969	3	383.888651	1148.64412	-0.018065	-6.9351E-06	-2.2838	-0.00087674	-2.3019	-0.00088368	384.22253553922246	42.702	1.7237	43.474	42.86	44.583	0.7724					43	26	2	0	0	0	0.70174	1	15807	15807		11.518	2.7661	1	4647200	+		56333	22090	40999	41327	55017	55017					0.07574854337326542
TVLTRSKR	8	Unmodified	_TVLTRSKR_					0	0	0		nc|ENSG00000165304|Q14680-4|MELK;nc|ENSG00000165304|Q14680-5|MELK;nc|ENSG00000165304|Q14680-2|MELK;nc|ENSG00000165304|Q14680-8|MELK;nc|ENSG00000165304|Q14680-7|MELK;nc|ENSG00000165304|Q14680-6|MELK;ENSG00000165304|ENST00000298048|MELK;nc|ENSG00000165304|Q14680-3|MELK	nc|ENSG00000165304|Q14680-4|MELK	nc|ENSG00000165304|Q14680-4|MELK	MULTI-MSMS	A375_MHC_IP_R1	1	481.2005310058594	2	480.801083	959.587613	-0.61958	-0.00029789	-0.67958	-0.00032674	-1.2992	-0.00062464	480.8008116846021	130.79	1.618	130.79	130.57	132.18	0					65	31	3	0	0	0	0.7779	1	50367	50367		2.5775	0	1	123450000			56334	6939	41000	41328	55018	55018					0.10620271291327299
TVLTRSKR	8	Unmodified	_TVLTRSKR_					0	0	0		nc|ENSG00000165304|Q14680-4|MELK;nc|ENSG00000165304|Q14680-5|MELK;nc|ENSG00000165304|Q14680-2|MELK;nc|ENSG00000165304|Q14680-8|MELK;nc|ENSG00000165304|Q14680-7|MELK;nc|ENSG00000165304|Q14680-6|MELK;ENSG00000165304|ENST00000298048|MELK;nc|ENSG00000165304|Q14680-3|MELK	nc|ENSG00000165304|Q14680-4|MELK	nc|ENSG00000165304|Q14680-4|MELK	MULTI-MSMS	A375_MHC_IP_R2	2	481.200439453125	2	480.801083	959.587613	-0.5704	-0.00027425	-0.55216	-0.00026548	-1.1226	-0.00053973	480.80081000442595	130.62	1.4746	130.83	130.5	131.98	0.2142					50	28	3	0	0	0	0.7779	1	51322	51322		2.5775	0	1	76109000			56335	6939	41000	41328	55019	55019					0.10620271291327299
TVLTRSKR	8	Unmodified	_TVLTRSKR_					0	0	0		nc|ENSG00000165304|Q14680-4|MELK;nc|ENSG00000165304|Q14680-5|MELK;nc|ENSG00000165304|Q14680-2|MELK;nc|ENSG00000165304|Q14680-8|MELK;nc|ENSG00000165304|Q14680-7|MELK;nc|ENSG00000165304|Q14680-6|MELK;ENSG00000165304|ENST00000298048|MELK;nc|ENSG00000165304|Q14680-3|MELK	nc|ENSG00000165304|Q14680-4|MELK	nc|ENSG00000165304|Q14680-4|MELK	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	480.801083	959.587613	-0.61958	-0.00029789	-0.67958	-0.00032674	-1.2992	-0.00062464	480.8008116846021	130.79	1.618	130.79	130.57	132.18	0	-0.017979	-4.6166E-05	NaN	2.5775	65	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123450000			56336	6939	41000	41328							0.10620271291327299
TVLTSVKKKVK	11	Unmodified	_TVLTSVKKKVK_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16553955-16554369:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MSMS	A375_MHC_IP_R2	2	615.7386474609375	2	615.91083	1229.80711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.26	1	124.59	124.09	125.09	0.32969								0	0	0	0.16124	1	47990	47990		12.241	3.4953	1				56337	2000	41001	41329	55020	55020					0.20139657459162663
TVLWERIRSPE	11	Unmodified	_TVLWERIRSPE_					0	0	0			REV__ENST00000542587.5_3_19:19738915-19739703:-|nuORF	REV__ENST00000542587.5_3_19:19738915-19739703:-|nuORF	MSMS	A375_MHC_IP_R2	2	693.145751953125	2	693.380426	1384.7463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.49	1	125.78	125.28	126.28	0.2951								0	0	0	0.16273	1	48948	48948		4.5289	0.93237	1		+		56338	25970	41002	41330	55021	55021					0.06931520408920733
TVLWFTREPG	10	Unmodified	_TVLWFTREPG_					0	0	0		ENST00000471405.5_1_7:135366313-135386730:-|nuORF;nc|ENSG00000164707|Q9UKG4|SLC13A4;ENSG00000164707|ENST00000682651|SLC13A4	ENST00000471405.5_1_7:135366313-135386730:-|nuORF	ENST00000471405.5_1_7:135366313-135386730:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	402.94879150390625	3	402.548629	1204.62406	-0.033294	-1.3402E-05	-0.44658	-0.00017977	-0.47987	-0.00019317	402.548732238952	39.719	0.306	40.493	40.32	40.626	0.77451					12	5	3	0	0	0	0.94269	1	14696	14696		1.5923	0	1	2213100			56339	6869	41003	41331	55022	55022					0.029931033973753074
TVMFYCYY	8	Unmodified	_TVMFYCYY_					0	0	0		ENSG00000180245|ENST00000317735|RRH	ENSG00000180245|ENST00000317735|RRH	ENSG00000180245|ENST00000317735|RRH	MSMS	A375_MHC_IP_R1	1	545.122314453125	2	545.224639	1088.43473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.559	1	59.559	59.059	60.059	0								0	0	0	0.16876	1	21424	21424		10.183	0.80027	1				56340	8285	41004	41332	55023	55023					-0.10595428211831859
TVMGKIFAV	9	Unmodified	_TVMGKIFAV_					0	0	0		nc|ENSG00000145332|Q9P2G9-2|KLHL8;ENSG00000145332|ENST00000273963|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	MULTI-SECPEP	A375_MHC_IP_R1	1	483.6780700683594	2	483.278063	964.541574	-0.52961	-0.00025595	1.1815	0.000571	0.65192	0.00031506	483.27874203240384	85.437	1.0165	85.437	84.904	85.921	0					23	19	2	0	0	0	0.47368	1	31307	31307		26.884	9.9414	1	1692200			56341	5552	41005	41333	55024	55024					0.057884900648673465
TVMGKIFAV	9	Unmodified	_TVMGKIFAV_					0	0	0		nc|ENSG00000145332|Q9P2G9-2|KLHL8;ENSG00000145332|ENST00000273963|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6777648925781	2	483.278063	964.541574	-0.4904	-0.000237	0.92045	0.00044483	0.43005	0.00020783	483.2784729155405	84.323	0.70987	85.061	84.816	85.526	0.73853					24	13	3	0	0	0	0.63327	1	32072	32072		18.146	0	1	2424900			56342	5552	41005	41333	55025	55025					0.057884900648673465
TVMKMKKRVRR	11	Unmodified	_TVMKMKKRVRR_					0	0	0		ENST00000295321.8_1_2:128262310-128262487:-|nuORF	ENST00000295321.8_1_2:128262310-128262487:-|nuORF	ENST00000295321.8_1_2:128262310-128262487:-|nuORF	MSMS	A375_MHC_IP_R2	2	716.9391479492188	2	716.939408	1431.86426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.675	1	68.411	67.911	68.911	0.73631								0	0	0	0.16334	1	25643	25643		1.3295	0	1				56343	10496	41006	41334	55026	55026					0.16560478192241135
TVMLDSLDAW	10	Unmodified	_TVMLDSLDAW_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000013050	REV__CON__ENSEMBL:ENSBTAP00000013050	MULTI-MSMS	A375_MHC_IP_R1	1	576.176025390625	2	575.776082	1149.53761	-0.1478	-8.5101E-05	-0.01894	-1.0905E-05	-0.16674	-9.6006E-05	575.7760170516445	100.8	0.75888	100.8	100.43	101.19	0					30	14	3	0	0	0	0.60556	1	37052	37052		20.454	0	1	2218800	+	+	56344	15840	41007	41335	55027	55027					-0.031176442195146592
TVMLMLKEL	9	Unmodified	_TVMLMLKEL_					0	0	0			REV__ENST00000342947.7_1_7:24789338-24789407:-|nuORF	REV__ENST00000342947.7_1_7:24789338-24789407:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	539.705810546875	2	539.305964	1076.59737	-0.7532	-0.0004062	0.64334	0.00034696	-0.10985	-5.9245E-05	539.3061722902223	43.078	0.35334	43.851	43.623	43.977	0.7724					9	6	2	0	0	0	0.63327	1	16071	16071		24.021	9.1823	1	2852900	+		56345	23742	41008	41336	55028	55028					0.06213955190173692
TVMMISLF	8	Unmodified	_TVMMISLF_					0	0	0		tr|U7SQS5|U7SQS5_FUSNUManganese/zinc/irontransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01562PE=3SV=1	tr|U7SQS5|U7SQS5_FUSNUManganese/zinc/irontransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01562PE=3SV=1	tr|U7SQS5|U7SQS5_FUSNUManganese/zinc/irontransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01562PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	471.64581298828125	2	471.245375	940.476197	-0.42727	-0.00020135	0.91321	0.00043035	0.48594	0.000229	471.24562138298376	79.884	0.4608	79.884	79.625	80.086	0					12	8	2	0	0	0	0.7338	1	29203	29203		24.674	5.2349	1	1038100			56346	29594	41009	41337	55029	55029					0.0035775254752934416
TVMMISLF	8	Unmodified	_TVMMISLF_					0	0	0		tr|U7SQS5|U7SQS5_FUSNUManganese/zinc/irontransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01562PE=3SV=1	tr|U7SQS5|U7SQS5_FUSNUManganese/zinc/irontransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01562PE=3SV=1	tr|U7SQS5|U7SQS5_FUSNUManganese/zinc/irontransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01562PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	471.6451721191406	2	471.245375	940.476197	-0.50666	-0.00023876	0.08859	4.1748E-05	-0.41807	-0.00019701	471.24539043910494	78.908	0.3573	79.652	79.489	79.846	0.74474					9	6	2	0	0	0	0.71451	1	29985	29985		30.225	1.738	1	947220			56347	29594	41009	41337	55030	55030					0.0035775254752934416
TVMTMGSDFQY	11	Unmodified	_TVMTMGSDFQY_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1;ENST00000466794.5_1_19:12769146-12777470:-|nuORF;ENST00000462144.1_1_19:12771887-12774226:-|nuORF	nc|ENSG00000104774|O00754-2|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	MSMS	A375_MHC_IP_R2	2	640.16650390625	2	640.270306	1278.52606	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.905	1	66.643	66.143	67.143	0.73811								0	0	0	0.16191	1	24989	24989		8.7454	2.0222	1				56348	2535	41010	41338	55031	55031					-0.10206209305124503
TVNAFHATNP	10	Unmodified	_TVNAFHATNP_					0	0	0			REV__ENST00000528675.1_1_11:123468749-123468878:-|nuORF	REV__ENST00000528675.1_1_11:123468749-123468878:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	357.6084899902344	3	357.845446	1070.51451	-0.10558	-3.7783E-05	-1.0405	-0.00037235	-1.1461	-0.00041014	357.84525342285946	25.77	0.25312	25.77	25.613	25.866	0					6	4	2	0	0	0	0.91909	1	7620	7620		3.0723	0.57378	1	1348700	+		56349	21756	41011	41339	55032	55032					-0.01792902221973236
TVNGDLVGHVH	11	Unmodified	_TVNGDLVGHVH_					0	0	0		ENSG00000143669|ENST00000389793|LYST;ENST00000473037.5_1_1:235826242-235897989:-|nuORF	ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	MULTI-MSMS	A375_MHC_IP_R2	2	384.6000061035156	3	383.2	1146.57817	-0.31536	-0.00012085	-1.1024	-0.00042242	-1.4177	-0.00054327	383.2000615376196	40.845	0.76277	41.62	41.285	42.047	0.77451					63	14	6	0	0	0	0.72649	1	15099	15099		6.6235	0	1	37920000			56350	5423	41012	41340	55033	55033					0.010744582151573923
TVNGEYEKTW	10	Unmodified	_TVNGEYEKTW_					0	0	0			REV__ENSG00000256188|ENST00000539585|TAS2R30	REV__ENSG00000256188|ENST00000539585|TAS2R30	MULTI-MSMS	A375_MHC_IP_R2	2	613.4580078125	2	613.788035	1225.56152	-1.1372	-0.00069802	-0.80736	-0.00049555	-1.9446	-0.0011936	613.7867728366085	53.343	0.6637	54.094	53.842	54.505	0.75105					17	12	2	0	0	0	0.57505	1	20092	20092		22.736	1.1993	1	1432100	+		56351	22880	41013	41341	55034	55034					-0.042240874614890345
TVNGEYEKTW	10	Unmodified	_TVNGEYEKTW_					0	0	0			REV__ENSG00000256188|ENST00000539585|TAS2R30	REV__ENSG00000256188|ENST00000539585|TAS2R30	MULTI-MATCH	A375_MHC_IP_R1	1		2	613.788035	1225.56152	-0.13065	-8.0193E-05	-0.2576	-0.00015811	-0.38825	-0.0002383	613.7877021205389	54.094	0.60683	54.094	53.707	54.314	0	0.00025025	3.9233E-05	NaN	22.736	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1474300	+		56352	22880	41013	41341							-0.042240874614890345
TVNGEYEKTW	10	Unmodified	_TVNGEYEKTW_					0	0	0			REV__ENSG00000256188|ENST00000539585|TAS2R30	REV__ENSG00000256188|ENST00000539585|TAS2R30	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	613.788035	1225.56152	-1.1372	-0.00069802	-0.80736	-0.00049555	-1.9446	-0.0011936	613.7867728366085	53.343	0.6637	54.094	53.842	54.505	0.75105	-0.00025025	-0.00063564	NaN	22.736	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1432100	+		56353	22880	41013	41341							-0.042240874614890345
TVNGLITTLYI	11	Unmodified	_TVNGLITTLYI_					0	0	0			REV__ENSG00000280094|ENST00000623530|OR1B1	REV__ENSG00000280094|ENST00000623530|OR1B1	MULTI-MSMS	A375_MHC_IP_R1	1	604.7509155273438	2	604.350271	1206.68599	-0.24635	-0.00014888	1.0016	0.00060532	0.75526	0.00045644	604.350506078162	97.01	0.40503	97.01	96.833	97.238	0					14	7	3	0	0	0	0.57844	1	35681	35681		24.991	0.97039	1	1394200	+		56354	22987	41014	41342	55035	55035					0.09091410025871483
TVNGLITTLYI	11	Unmodified	_TVNGLITTLYI_					0	0	0			REV__ENSG00000280094|ENST00000623530|OR1B1	REV__ENSG00000280094|ENST00000623530|OR1B1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	604.350271	1206.68599	-0.24635	-0.00014888	1.0016	0.00060532	0.75526	0.00045644	604.350506078162	97.01	0.40503	97.01	96.833	97.238	0	0.033528	0.00040153	NaN	24.991	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1394200	+		56355	22987	41014	41342							0.09091410025871483
TVNITLSDV	9	Unmodified	_TVNITLSDV_					0	0	0		ENSG00000101542|ENST00000262717|CDH20	ENSG00000101542|ENST00000262717|CDH20	ENSG00000101542|ENST00000262717|CDH20	MULTI-SECPEP	A375_MHC_IP_R2	2	480.6921691894531	2	481.263665	960.512776	-0.64059	-0.00030829	-1.5044	-0.00072402	-2.145	-0.0010323	481.2629454484566	128.35	0.71179	128.58	128.3	129.01	0.23946					25	13	3	0	0	0	0.31606	1	50324	50324		39.95	20.693	1	19115000			56356	2306	41015	41343	55036	55036					0.03094043969440463
TVNKTVPNYGR	11	Unmodified	_TVNKTVPNYGR_					0	0	0			REV__nc|ENSG00000108582|O75976-2|CPD	REV__nc|ENSG00000108582|O75976-2|CPD	MULTI-MSMS	A375_MHC_IP_R1	1	417.2947692871094	3	416.894688	1247.66223	0.4723	0.0001969	-0.26091	-0.00010877	0.21139	8.8128E-05	416.89445110396633	21.467	1.1183	21.467	20.69	21.808	0					47	21	3	0	0	0	0.57844	1	5527	5527		19.987	4.4484	1	5666500	+		56357	17541	41016	41344	55037	55037					0.04830989312017664
TVNKTVPNYGR	11	Unmodified	_TVNKTVPNYGR_					0	0	0			REV__nc|ENSG00000108582|O75976-2|CPD	REV__nc|ENSG00000108582|O75976-2|CPD	MULTI-MSMS	A375_MHC_IP_R2	2	417.2944030761719	3	416.894688	1247.66223	-0.34322	-0.00014309	-0.11684	-4.8711E-05	-0.46006	-0.0001918	416.89457406346526	19.945	1.1163	20.555	19.79	20.907	0.61029					39	21	2	0	0	0	0.60848	1	6007	6007		14.171	0	1	3139900	+		56358	17541	41016	41344	55038	55038					0.04830989312017664
TVNKTVPNYGR	11	Unmodified	_TVNKTVPNYGR_					0	0	0			REV__nc|ENSG00000108582|O75976-2|CPD	REV__nc|ENSG00000108582|O75976-2|CPD	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	416.894688	1247.66223	0.4723	0.0001969	-0.26091	-0.00010877	0.21139	8.8128E-05	416.89445110396633	21.467	1.1183	21.467	20.69	21.808	0	0	0	NaN	19.987	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5666500	+		56359	17541	41016	41344							0.04830989312017664
TVNNPISLI	9	Unmodified	_TVNNPISLI_					0	0	0		nc|ENSG00000148357|Q8NDA2-4|HMCN2;nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-SECPEP	A375_MHC_IP_R1	1	485.68975830078125	2	485.782025	969.549496	-0.1907	-9.2638E-05	3.8595	0.0018749	3.6688	0.0017822	485.78265717295466	33.603	0.55668	33.603	33.393	33.95	0					20	10	3	0	0	0	0.58271	1	11089	11089		14.838	0	1	2363600			56360	14668	41017	41345	55039	55039					0.06350340586004677
TVNPPAPYRL	10	Unmodified	_TVNPPAPYRL_					0	0	0			REV__nc|ENSG00000283703|P0DP72|VSIG10L2	REV__nc|ENSG00000283703|P0DP72|VSIG10L2	MULTI-SECPEP	A375_MHC_IP_R1	1	375.94036865234375	3	376.545108	1126.61349	0.85528	0.00032205	-0.61683	-0.00023227	0.23844	8.9784E-05	376.54484409911345	49.147	0.3529	49.147	48.983	49.336	0					9	6	2	0	0	0	0.91556	1	17391	17391		5.7834	0.88642	1	985470	+		56361	22998	41018	41346	55040	55040					0.05525120742936451
TVNTFQPDDDN	11	Unmodified	_TVNTFQPDDDN_					0	0	0			REV__ENSG00000132405|ENST00000409757|TBC1D14	REV__ENSG00000132405|ENST00000409757|TBC1D14	MSMS	A375_MHC_IP_R2	2	633.2244262695312	2	633.267664	1264.52077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.862	1	64.603	64.103	65.103	0.74022								0	0	0	0.16124	1	24217	24217		12.241	0	1		+		56362	18650	41019	41347	55041	55041					-0.10090473571744951
TVNTLEIEL	9	Unmodified	_TVNTLEIEL_					0	0	0		ENSG00000108759|ENST00000225899|KRT32;CON__Q14532;CON__A2AB72;KRT35|p.A322T|1|0.42|ENSG00000197079|chr17:41478396-41478396|C/T|missense_variant	ENSG00000108759|ENST00000225899|KRT32	ENSG00000108759|ENST00000225899|KRT32	MULTI-SECPEP	A375_MHC_IP_R1	1	516.6843872070312	2	516.284597	1030.55464	-0.54177	-0.00027971	0.036116	1.8646E-05	-0.50565	-0.00026106	516.2845790610007	73.978	0.8101	73.978	73.589	74.4	0					35	15	3	0	0	0	0.070665	1	26944	26944		69.105	0	1	14017000		+	56363	565	41020	41348	55042	55042					0.040585996579466155
TVNTLEIEL	9	Unmodified	_TVNTLEIEL_					0	0	0		ENSG00000108759|ENST00000225899|KRT32;CON__Q14532;CON__A2AB72;KRT35|p.A322T|1|0.42|ENSG00000197079|chr17:41478396-41478396|C/T|missense_variant	ENSG00000108759|ENST00000225899|KRT32	ENSG00000108759|ENST00000225899|KRT32	MULTI-MSMS	A375_MHC_IP_R2	2	516.6842651367188	2	516.284597	1030.55464	-0.76778	-0.0003964	0.2853	0.00014729	-0.48249	-0.0002491	516.2846892429716	73.011	0.91508	73.746	73.379	74.294	0.73541					35	17	3	0	0	0	0.037683	1	27688	27688		69.105	6.5322	1	14060000		+	56364	565	41020	41348	55043	55043					0.040585996579466155
TVNVIRGDK	9	Unmodified	_TVNVIRGDK_					0	0	0			REV__nc|ENSG00000170927|P08F94-2|PKHD1	REV__nc|ENSG00000170927|P08F94-2|PKHD1	MULTI-MSMS	A375_MHC_IP_R2	2	501.6899108886719	2	501.290548	1000.56654	-0.3975	-0.00019926	0.057157	2.8652E-05	-0.34035	-0.00017061	501.2904638081066	114.09	5.6505	114.8	111.98	117.63	0.70984					264	110	4	0	0	0	0.34064	1	42047	42047		27.629	1.2875	1	35047000	+		56365	21034	41021	41349	55044	55044					0.06628261191804086
TVNVVGFDL	9	Unmodified	_TVNVVGFDL_					0	0	0			REV__ENSG00000158553|ENST00000444565|POM121L2	REV__ENSG00000158553|ENST00000444565|POM121L2	MULTI-SECPEP	A375_MHC_IP_R1	1	481.68975830078125	2	482.260925	962.507297	-0.3274	-0.00015789	0.59151	0.00028526	0.26411	0.00012737	482.2609414807185	91.714	0.65814	91.714	91.452	92.11	0					16	12	2	0	0	0	0.53748	1	33792	33792		30.637	7.9003	1	998940	+		56366	20084	41022	41350	55045	55045					0.02454365177618456
TVPAGFKI	8	Unmodified	_TVPAGFKI_					0	0	0		ENST00000542440.5_1_12:122269651-122270002:+|nuORF	ENST00000542440.5_1_12:122269651-122270002:+|nuORF	ENST00000542440.5_1_12:122269651-122270002:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	833.861328125	1	832.492716	831.485439	-0.40719	-0.00033898	-0.047274	-3.9355E-05	-0.45446	-0.00037834	832.4926399978757	76.193	0.30254	76.193	76.017	76.319	0					10	5	2	0	0	0	0.75805	1	27769	27769		18.135	0	1	1961200			56367	13300	41023	41351	55046	55046					0.06295605219713707
TVPAGFKI	8	Unmodified	_TVPAGFKI_					0	0	0		ENST00000542440.5_1_12:122269651-122270002:+|nuORF	ENST00000542440.5_1_12:122269651-122270002:+|nuORF	ENST00000542440.5_1_12:122269651-122270002:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	832.492716	831.485439	-0.80014	-0.00066611	0.19092	0.00015894	-0.60922	-0.00050717	832.4927482174704	75.21	0.30309	75.948	75.772	76.075	0.73752	-0.12286	6.1498E-05	NaN	18.135	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2124900			56368	13300	41023	41351							0.06295605219713707
TVPDELPNEIE	11	Unmodified	_TVPDELPNEIE_					0	0	0			REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MSMS	A375_MHC_IP_R1	1	628.7071533203125	2	628.306258	1254.59796	-0.56737	-0.00035648	0.52083	0.00032724	-0.04654	-2.9241E-05	628.3066147755683	42.152	0.45444	42.152	41.932	42.386	0					21	8	3	0	0	0	0.097637	1	14585	14585		70.332	22.738	1	4062700	+		56369	16308	41024	41352	55047	55047					-0.019152553554249607
TVPDELPNEIE	11	Unmodified	_TVPDELPNEIE_					0	0	0			REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MSMS	A375_MHC_IP_R2	2	628.7062377929688	2	628.306258	1254.59796	-0.94715	-0.0005951	0.31531	0.00019811	-0.63183	-0.00039699	628.306539606834	41.513	0.50773	42.287	42.047	42.555	0.77451					17	9	3	0	0	0	0.11203	1	15416	15416		67.838	16.423	1	5388500	+		56370	16308	41024	41352	55048	55048					-0.019152553554249607
TVPDELPNEIE	11	Unmodified	_TVPDELPNEIE_					0	0	0			REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	628.306258	1254.59796	-0.56737	-0.00035648	0.52083	0.00032724	-0.04654	-2.9241E-05	628.3066147755683	42.152	0.45444	42.152	41.932	42.386	0	-0.06762	0.00017863	NaN	70.332	21	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4062700	+		56371	16308	41024	41352							-0.019152553554249607
TVPDELPNEIE	11	Unmodified	_TVPDELPNEIE_					0	0	0			REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	628.306258	1254.59796	-0.94715	-0.0005951	0.31531	0.00019811	-0.63183	-0.00039699	628.306539606834	41.513	0.50773	42.287	42.047	42.555	0.77451	0.06762	-7.9628E-05	NaN	70.332	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5388500	+		56372	16308	41024	41352							-0.019152553554249607
TVPDVPREL	9	Unmodified	_TVPDVPREL_					0	0	0			REV__ENSG00000225614|ENST00000565624|ZNF469	REV__ENSG00000225614|ENST00000565624|ZNF469	MULTI-MSMS	A375_MHC_IP_R2	2	513.6634521484375	2	513.284931	1024.55531	-0.76348	-0.00039188	-0.054004	-2.7719E-05	-0.81748	-0.0004196	513.2849215591829	77.269	1.0686	78.012	77.707	78.776	0.74293					53	20	3	0	0	0	0.53367	1	29227	29227		18.146	3.3081	1	29726000	+		56373	22715	41025	41353	55049	55049					0.04401439097682669
TVPEKLKEFM	10	Unmodified	_TVPEKLKEFM_					0	0	0		ENSG00000031698|ENST00000234677|SARS1;ENST00000468588.1_1_1:109779820-109780507:+|nuORF	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	407.6106262207031	3	407.889775	1220.6475	-0.28512	-0.0001163	1.8284	0.0007458	1.5433	0.0006295	407.88996143233106	38.756	0.30695	39.53	39.401	39.708	0.77451					6	5	2	0	0	0	0.89761	1	14256	14256		14.957	5.1929	1	1271700			56374	1114	41026	41354	55050	55050					0.04599781119668478
TVPEQTQY	8	Unmodified	_TVPEQTQY_					0	0	0			REV__MAGEC3|p.K474Q|1|0.16|ENSG00000165509|chrX:141897178-141897178|A/C|missense_variant	REV__MAGEC3|p.K474Q|1|0.16|ENSG00000165509|chrX:141897178-141897178|A/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	483.6519775390625	2	483.232364	964.450176	-0.28952	-0.00013991	-0.018039	-8.7172E-06	-0.30756	-0.00014862	483.2323216875515	33.972	0.8075	33.972	33.597	34.405	0					44	15	5	0	0	0	0.51581	1	11189	11189		48.346	2.3249	1	65229000	+		56375	26976	41027	41355	55051	55051					-0.033471020987576594
TVPFTAGLNV	10	Unmodified	_TVPFTAGLNV_					0	0	0			REV__ENST00000286614.10_1_8:89339652-89339697:-|nuORF	REV__ENST00000286614.10_1_8:89339652-89339697:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	509.70391845703125	2	509.782025	1017.5495	-0.43254	-0.0002205	-0.3353	-0.00017093	-0.76784	-0.00039143	509.7820566817562	74.733	0.76091	74.733	74.451	75.211	0					24	14	3	0	0	0	0.62155	1	27316	27316		19.257	1.1106	1	3530900	+		56376	23340	41028	41356	55052	55052					0.04142340586008686
TVPHIMFF	8	Unmodified	_TVPHIMFF_					0	0	0			REV__ENSG00000086570|ENST00000261800|FAT2	REV__ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	A375_MHC_IP_R2	2	991.91015625	1	991.506986	990.499709	0.1942	0.00019255	0.78311	0.00077645	0.97731	0.00096901	991.5076487172389	144.08	0.18484	144.1	143.99	144.17	0.024414					5	3	2	0	0	0	0.77839	1	56305	56305		0.79363	0	1	663420	+		56377	16857	41029	41357	55053	55053					0.004079343763578436
TVPIQQYW	8	Unmodified	_TVPIQQYW_					0	0	0			REV__FAM169A|p.R251Q|1|0.29|ENSG00000198780|chr5:74805203-74805203|C/T|missense_variant	REV__FAM169A|p.R251Q|1|0.29|ENSG00000198780|chr5:74805203-74805203|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	517.7050170898438	2	517.768917	1033.52328	-0.5321	-0.00027551	-0.35608	-0.00018437	-0.88818	-0.00045987	517.7684511089094	74.058	0.96297	74.058	73.488	74.451	0					28	18	2	0	0	0	0.75805	1	26847	26847		18.135	1.9859	1	4018800	+		56378	26609	41030	41358	55054	55054					0.007860714145181191
TVPIQQYW	8	Unmodified	_TVPIQQYW_					0	0	0			REV__FAM169A|p.R251Q|1|0.29|ENSG00000198780|chr5:74805203-74805203|C/T|missense_variant	REV__FAM169A|p.R251Q|1|0.29|ENSG00000198780|chr5:74805203-74805203|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	518.1668701171875	2	517.768917	1033.52328	-0.5321	-0.00027551	-0.35608	-0.00018437	-0.88818	-0.00045987	517.7684511089094	74.058	0.96297	74.058	73.488	74.451	0					28	18	2	0	0	0	0.91495	1	26868	26868		18.135	8.7875	1	4018800	+		56379	26609	41030	41358	55055	55055					0.007860714145181191
TVPIQQYW	8	Unmodified	_TVPIQQYW_					0	0	0			REV__FAM169A|p.R251Q|1|0.29|ENSG00000198780|chr5:74805203-74805203|C/T|missense_variant	REV__FAM169A|p.R251Q|1|0.29|ENSG00000198780|chr5:74805203-74805203|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	517.7054443359375	2	517.768917	1033.52328	-0.69682	-0.00036079	0.40735	0.00021092	-0.28947	-0.00014988	517.7690604820087	73.229	1.0713	73.964	73.633	74.704	0.73541					33	20	3	0	0	0	0.75805	1	27682	27682		18.135	1.1927	1	4827400	+		56380	26609	41030	41358	55056	55056					0.007860714145181191
TVPKSLQRY	9	Unmodified	_TVPKSLQRY_					0	0	0			REV__nc|ENSG00000142973|P13584|CYP4B1	REV__nc|ENSG00000142973|P13584|CYP4B1	MULTI-MSMS	A375_MHC_IP_R1	1	546.7142944335938	2	546.314023	1090.61349	-0.6984	-0.00038155	0.26295	0.00014365	-0.43546	-0.0002379	546.3141676499529	46.931	0.45902	46.931	46.596	47.055	0					13	8	3	0	0	0	0.65721	1	16524	16524		10.824	0.67336	1	1545600	+		56381	19332	41031	41359	55057	55057					0.07181120742939129
TVPLKPPP	8	Unmodified	_TVPLKPPP_					0	0	0		ENSG00000138785|ENST00000340139|INTS12	ENSG00000138785|ENST00000340139|INTS12	ENSG00000138785|ENST00000340139|INTS12	MULTI-MSMS	A375_MHC_IP_R1	1	425.1651306152344	2	424.765646	847.516739	-0.42426	-0.00018021	0.067597	2.8713E-05	-0.35667	-0.0001515	424.7656641708102	26.043	0.50684	26.043	25.917	26.423	0					20	9	3	0	0	0	0.23604	1	7716	7716		64.236	11.968	1	14387000			56382	5034	41032	41360	55058	55058					0.08688178253794376
TVPLKPPP	8	Unmodified	_TVPLKPPP_					0	0	0		ENSG00000138785|ENST00000340139|INTS12	ENSG00000138785|ENST00000340139|INTS12	ENSG00000138785|ENST00000340139|INTS12	MULTI-MSMS	A375_MHC_IP_R2	2	425.1654357910156	2	424.765646	847.516739	-0.60954	-0.00025891	0.50061	0.00021264	-0.10893	-4.6268E-05	424.7656420369916	25.444	0.50819	26.087	25.924	26.433	0.64368					23	9	3	0	0	0	0.36021	1	8506	8506		54.774	6.4277	1	13460000			56383	5034	41032	41360	55059	55059					0.08688178253794376
TVPMIGMI	8	Unmodified	_TVPMIGMI_					0	0	0			REV__tr|U7STI0|U7STI0_FUSNUPeptidoglycanglycosyltransferaseRodAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rodAPE=3SV=1	REV__tr|U7STI0|U7STI0_FUSNUPeptidoglycanglycosyltransferaseRodAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rodAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	430.9507141113281	2	431.232267	860.449982	-0.41299	-0.0001781	2.301	0.00099227	1.888	0.00081417	431.23300989519873	28.138	0.20312	28.817	28.655	28.858	0.67857					8	3	3	0	0	0	0.972	1	9639	9639		0.69038	0.088878	1	1693600	+		56384	28487	41033	41361	55060	55060					0.01417483376042128
TVPNNGDY	8	Unmodified	_TVPNNGDY_					0	0	0			REV__ENSG00000134538|ENST00000256958|SLCO1B1	REV__ENSG00000134538|ENST00000256958|SLCO1B1	MULTI-SECPEP	A375_MHC_IP_R1	1	439.6533508300781	2	440.195782	878.377011	-0.070359	-3.0972E-05	-0.13964	-6.147E-05	-0.21	-9.2441E-05	440.1956973339629	63.474	0.76608	63.474	63.121	63.887	0					23	14	2	0	0	0	0.972	1	23075	23075		9.3474	0	1	2810500	+		56385	18786	41034	41362	55061	55061					-0.06704230821378587
TVPPASHALLV	11	Unmodified	_TVPPASHALLV_					0	0	0			REV__ENST00000318291.4_1_12:752234-753264:+|nuORF	REV__ENST00000318291.4_1_12:752234-753264:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	553.2234497070312	2	552.824224	1103.63389	-0.34915	-0.00019302	-3.865	-0.0021367	-4.2142	-0.0023297	552.8220692245767	127.95	1.2655	127.95	127.57	128.84	0					36	24	2	0	0	0	0.92455	1	49431	49431		11.495	0.6952	1	36433000	+		56386	23551	41035	41363	55062	55062					0.08622291402753035
TVPPSEGEDH	10	Unmodified	_TVPPSEGEDH_					0	0	0			REV__ENSG00000111799|ENST00000322507|COL12A1	REV__ENSG00000111799|ENST00000322507|COL12A1	MULTI-MSMS	A375_MHC_IP_R1	1	534.635986328125	2	534.235635	1066.45672	-1.0243	-0.0005472	1.0836	0.00057889	0.059328	3.1695E-05	534.2363650325027	67.613	0.96484	67.613	67.194	68.159	0					39	18	3	0	0	0	0.69306	1	24438	24438		13.906	2.4113	1	15745000	+		56387	17695	41036	41364	55063	55063					-0.07385208938057986
TVPPVFVSV	9	Unmodified	_TVPPVFVSV_					0	0	0		nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-SECPEP	A375_MHC_IP_R1	1	473.1762390136719	2	472.776211	943.537869	-0.034011	-1.6079E-05	0.067431	3.188E-05	0.033421	1.5801E-05	472.77612810255755	112.97	1.1671	112.97	112.38	113.55	0					36	22	2	0	0	0	0.07754	1	41430	41430		74.423	7.0789	1	1958300			56388	6175	41037	41365	55064	55064					0.06384143562661393
TVPPVFVSV	9	Unmodified	_TVPPVFVSV_					0	0	0		nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-MATCH	A375_MHC_IP_R2	2		2	472.776211	943.537869	-0.36358	-0.00017189	0.32461	0.00015347	-0.038972	-1.8425E-05	472.7762369187418	112.05	1.4299	112.77	112.15	113.58	0.72458	-0.098409	0.00014847	NaN	74.423	39	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1875400			56389	6175	41037	41365							0.06384143562661393
TVPQATSTSPH	11	Unmodified	_TVPQATSTSPH_					0	0	0			REV__nc|ENSG00000137337|Q14676-2|MDC1	REV__nc|ENSG00000137337|Q14676-2|MDC1	MULTI-MSMS	A375_MHC_IP_R1	1	563.6801147460938	2	563.280377	1124.5462	-0.46005	-0.00025914	-0.88213	-0.00049689	-1.3422	-0.00075603	563.280434661407	75.895	0.80561	75.895	75.514	76.319	0					29	15	3	0	0	0	0.7039	1	27661	27661		15.248	0.41021	1	3409200	+		56390	19001	41038	41366	55065	55065					-0.011089542586660173
TVPRRKIKRIY	11	Unmodified	_TVPRRKIKRIY_					0	0	0		ENST00000318121.7_1_1:36230063-36230255:-|nuORF	ENST00000318121.7_1_1:36230063-36230255:-|nuORF	ENST00000318121.7_1_1:36230063-36230255:-|nuORF	MSMS	A375_MHC_IP_R1	1	715.175537109375	2	715.459345	1428.90414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.537	1	71.537	71.037	72.037	0								0	0	0	0.1624	1	25998	25998		6.2058	5.0124	1				56391	10670	41039	41367	55066	55066					0.20684064458828288
TVPRSTQFPS	10	Unmodified	_TVPRSTQFPS_					0	0	0			REV__nc|ENSG00000077264|O75914-4|PAK3	REV__nc|ENSG00000077264|O75914-4|PAK3	MULTI-MSMS	A375_MHC_IP_R2	2	560.6934204101562	2	560.293288	1118.57202	-0.73037	-0.00040922	0.67113	0.00037603	-0.059238	-3.3191E-05	560.2936154148904	97.769	0.76189	98.525	98.281	99.043	0.75586					21	14	3	0	0	0	0.52785	1	37123	37123		26.268	7.895	1	1678000	+		56392	27119	41040	41368	55067	55067					0.017479399836020093
TVPRSTQFPS	10	Unmodified	_TVPRSTQFPS_					0	0	0			REV__nc|ENSG00000077264|O75914-4|PAK3	REV__nc|ENSG00000077264|O75914-4|PAK3	MULTI-SECPEP	A375_MHC_IP_R2	2	559.6112060546875	2	560.293288	1118.57202	-0.73037	-0.00040922	0.67113	0.00037603	-0.059238	-3.3191E-05	560.2936154148904	97.769	0.76189	98.525	98.281	99.043	0.75586					21	14	3	0	0	0	0.71464	1	37090	37090		33.445	14.083	1	1678000	+		56393	27119	41040	41368	55068	55068					0.017479399836020093
TVPSIKEFD	9	Unmodified	_TVPSIKEFD_					0	0	0			REV__tr|U7SJ54|U7SJ54_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02095PE=3SV=1	REV__tr|U7SJ54|U7SJ54_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02095PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	517.7052001953125	2	518.27149	1034.52843	-0.356	-0.0001845	-1.0066	-0.00052167	-1.3626	-0.00070617	518.2713799678384	71.419	0.35696	71.419	71.159	71.516	0					12	6	3	0	0	0	0.35487	1	25978	25978		43.858	0	1	1890100	+		56394	28225	41041	41369	55069	55069					0.012543304864948368
TVPSPKDSL	9	Unmodified	_TVPSPKDSL_					0	0	0			REV__nc|ENSG00000165671|Q96L73-2|NSD1	REV__nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MSMS	A375_MHC_IP_R1	1	943.9085693359375	1	943.509488	942.502212	0.064982	6.1311E-05	-0.23424	-0.000221	-0.16925	-0.00015969	943.5092360795843	102.03	0.75851	102.03	101.65	102.4	0					28	14	3	0	0	0	0.36834	1	37591	37591		26.268	0	1	9492000	+		56395	20609	41042	41370	55070	55070					0.028660613149895653
TVPSPKDSL	9	Unmodified	_TVPSPKDSL_					0	0	0			REV__nc|ENSG00000165671|Q96L73-2|NSD1	REV__nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	943.509488	942.502212	0.064982	6.1311E-05	-0.23424	-0.000221	-0.16925	-0.00015969	943.5092360795843	102.03	0.75851	102.03	101.65	102.4	0	0.0037187	-8.6109E-05	NaN	26.268	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9492000	+		56396	20609	41042	41370							0.028660613149895653
TVPSPKDSL	9	Unmodified	_TVPSPKDSL_					0	0	0			REV__nc|ENSG00000165671|Q96L73-2|NSD1	REV__nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MATCH	A375_MHC_IP_R2	2		1	943.509488	942.502212	-0.086747	-8.1846E-05	0.047864	4.516E-05	-0.038883	-3.6686E-05	943.5094726294197	101.26	0.66231	102.02	101.65	102.31	0.76428	-0.0037187	0.00018006	NaN	26.268	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7652300	+		56397	20609	41042	41370							0.028660613149895653
TVPTVGHVLLT	11	Unmodified	_TVPTVGHVLLT_					0	0	0			REV__ENSG00000146828|ENST00000354161|SLC12A9	REV__ENSG00000146828|ENST00000354161|SLC12A9	MULTI-MSMS	A375_MHC_IP_R1	1	379.9605712890625	3	379.560646	1135.66011	0.188	7.1359E-05	0.18122	6.8784E-05	0.36922	0.00014014	379.56069907230227	46.825	1.0722	46.825	46.444	47.517	0					66	20	5	0	0	0	0.47743	1	16390	16390		32.898	0	1	106120000	+		56398	19552	41043	41371	55071	55071					0.09770560574247611
TVQELANMD	9	Unmodified	_TVQELANMD_					0	0	0		tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1	tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1	tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1	MSMS	A375_MHC_IP_R1	1	510.686767578125	2	510.736957	1019.45936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.57	1	100.57	100.07	101.07	0								0	0	0	0.12472	1	36966	36966		34.402	13.948	1				56399	29691	41044	41372	55072	55072					-0.04959076804755114
TVQFIVTE	8	Unmodified	_TVQFIVTE_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.N3444Tfs*24|1|0.36|ENSG00000164199|chr5:90728837-90728837|A/-|frameshift_variant;ENST00000509621.1_3_5:89989878-90055411:+|nuORF	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MSMS	A375_MHC_IP_R2	2	468.6632995605469	2	468.755475	935.496398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.39	1	111.13	110.63	111.63	0.73692								0	0	0	0.14605	1	41642	41642		49.933	1.5872	1				56400	6801	41045	41373	55073	55073					0.02606962803326951
TVQFSCDEDY	10	Unmodified	_TVQFSCDEDY_					0	0	0		CSMD3|p.R1401Gfs*44|1|0.43|ENSG00000164796|chr8:112556796-112556796|T/-|frameshift_variant;nc|ENSG00000164796|Q7Z407-5|CSMD3;nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3;nc|ENSG00000164796|Q7Z407-2|CSMD3;ENSG00000164796|ENST00000297405|CSMD3	CSMD3|p.R1401Gfs*44|1|0.43|ENSG00000164796|chr8:112556796-112556796|T/-|frameshift_variant	CSMD3|p.R1401Gfs*44|1|0.43|ENSG00000164796|chr8:112556796-112556796|T/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	603.727783203125	2	603.734611	1205.45467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.624	1	90.356	89.856	90.856	0.7318								0	0	0	0.15451	1	34104	34104		6.2058	0.97511	1				56401	675	41046	41374	55074	55074					-0.13984005738143424
TVQHLEEV	8	Unmodified	_TVQHLEEV_					0	0	0		nc|ENSG00000064787|O75363|BCAS1;nc|ENSG00000064787|O75363-2|BCAS1;ENSG00000064787|ENST00000688948|BCAS1	nc|ENSG00000064787|O75363|BCAS1	nc|ENSG00000064787|O75363|BCAS1	MULTI-SECPEP	A375_MHC_IP_R1	1	478.1478576660156	2	477.748182	953.481811	-0.54494	-0.00026035	0.19924	9.5188E-05	-0.3457	-0.00016516	477.74823699570686	31.27	0.86217	31.27	30.754	31.616	0					29	16	4	0	0	0	0.64713	1	10033	10033		36.127	0	1	5579300			56402	1360	41047	41375	55075	55075					0.0032089065518903226
TVQHLEEV	8	Unmodified	_TVQHLEEV_					0	0	0		nc|ENSG00000064787|O75363|BCAS1;nc|ENSG00000064787|O75363-2|BCAS1;ENSG00000064787|ENST00000688948|BCAS1	nc|ENSG00000064787|O75363|BCAS1	nc|ENSG00000064787|O75363|BCAS1	MULTI-SECPEP	A375_MHC_IP_R2	2	478.14788818359375	2	477.748182	953.481811	-0.55881	-0.00026697	-0.33889	-0.0001619	-0.89769	-0.00042887	477.747961980296	30.539	0.75753	31.257	30.911	31.669	0.71857					21	14	2	0	0	0	0.40488	1	10739	10739		48.346	0	1	5007400			56403	1360	41047	41375	55076	55076					0.0032089065518903226
TVQHLIYQERL	11	Unmodified	_TVQHLIYQERL_					0	0	0			REV__nc|ENSG00000131018|Q8NF91-7|SYNE1	REV__nc|ENSG00000131018|Q8NF91-7|SYNE1	MULTI-MSMS	A375_MHC_IP_R2	2	700.3427124023438	2	700.388251	1398.76195	-0.78175	-0.00054753	-0.69373	-0.00048588	-1.4755	-0.0010334	700.3865871282336	128.24	0.25467	128.48	128.3	128.55	0.23946					5	4	2	0	0	0	0.73016	1	50349	50349		8.7454	0	1	1273500	+		56404	27223	41048	41376	55077	55077					0.07851806925987148
TVQKGHVLF	9	Unmodified	_TVQKGHVLF_					0	0	0			REV__nc|ENSG00000102893|Q93100-2|PHKB	REV__nc|ENSG00000102893|Q93100-2|PHKB	MSMS	A375_MHC_IP_R1	1	514.6989135742188	2	514.798009	1027.58147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.25	1	55.25	54.75	55.75	0								0	0	0	0.15142	1	19754	19754		19.257	2.3147	1		+		56405	17238	41049	41377	55078	55078					0.06877753059779934
TVQKISVLL	9	Unmodified	_TVQKISVLL_					0	0	0			REV__GLP2R|p.K363Nfs*52|1|0.22|ENSG00000065325|chr17:9870779-9870803|GCTTCTCATTTCTAAGCTCAAAGCT/-|frameshift_variant	REV__GLP2R|p.K363Nfs*52|1|0.22|ENSG00000065325|chr17:9870779-9870803|GCTTCTCATTTCTAAGCTCAAAGCT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	501.2234802246094	2	500.823692	999.632832	-0.2473	-0.00012385	-0.1916	-9.5957E-05	-0.4389	-0.00021981	500.8234286822809	54.389	0.45558	54.389	54.163	54.619	0					15	8	2	0	0	0	0.24324	1	19477	19477		53.833	6.0841	1	2309700	+		56406	16493	41050	41378	55079	55079					0.13300077033841262
TVQLEEKVR	9	Unmodified	_TVQLEEKVR_					0	0	0			REV__ENST00000578730.1_1_4:1245552-1281430:+|nuORF	REV__ENST00000578730.1_1_4:1245552-1281430:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	367.6239318847656	3	367.880267	1100.61897	-0.1974	-7.2619E-05	0.082174	3.023E-05	-0.11522	-4.2389E-05	367.8801843022987	24.817	0.25343	25.46	25.314	25.568	0.64368					9	4	3	0	0	0	0.32966	1	8162	8162		42.312	8.8676	1	2548300	+		56407	26330	41051	41379	55080	55080					0.07268799534745085
TVQLKLKRPV	10	Unmodified	_TVQLKLKRPV_					0	0	0			REV__nc|ENSG00000076716|O75487-2|GPC4	REV__nc|ENSG00000076716|O75487-2|GPC4	MULTI-MSMS	A375_MHC_IP_R2	2	394.5789489746094	3	394.595802	1180.76558	-0.48088	-0.00018975	0.24916	9.8318E-05	-0.23172	-9.1435E-05	394.59597087116	20.451	1.2176	21.061	20.449	21.666	0.61029					49	23	3	0	0	0	0.72358	1	6160	6160		1.7423	0	1	2655300	+		56408	16680	41052	41380	55081	55081					0.18242521490492436
TVQLMQRLY	9	Unmodified	_TVQLMQRLY_					0	0	0		ABCB1|p.T1015Pfs*3|1|0.21|ENSG00000085563|chr7:87516550-87516550|T/-|frameshift_variant;nc|ENSG00000085563|P08183-2|ABCB1;ENSG00000085563|ENST00000622132|ABCB1	ABCB1|p.T1015Pfs*3|1|0.21|ENSG00000085563|chr7:87516550-87516550|T/-|frameshift_variant	ABCB1|p.T1015Pfs*3|1|0.21|ENSG00000085563|chr7:87516550-87516550|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	384.94647216796875	3	384.546231	1150.61686	-0.59413	-0.00022847	0.56222	0.0002162	-0.031906	-1.2269E-05	384.546509752855	36.721	0.60966	37.492	37.106	37.716	0.7709					20	11	3	0	0	0	0.72623	1	13397	13397		9.544	2.4423	1	2544600			56409	8	41053	41381	55082	55082					0.047580475252971155
TVQLSTPSV	9	Unmodified	_TVQLSTPSV_					0	0	0			REV__ENST00000531303.5_1_11:6412683-6415445:+|nuORF	REV__ENST00000531303.5_1_11:6412683-6415445:+|nuORF	MSMS	A375_MHC_IP_R2	2	466.18402099609375	2	466.258382	930.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.735	1	36.498	35.998	36.998	0.76338								0	0	0	0.15411	1	12975	12975		14.838	0	1		+		56410	25849	41054	41382	55083	55083					0.03418061315005616
TVQQARSP	8	Unmodified	_TVQQARSP_					0	0	0		nc|ENSG00000188931|Q5VTH2|CFAP126	nc|ENSG00000188931|Q5VTH2|CFAP126	nc|ENSG00000188931|Q5VTH2|CFAP126	MSMS	A375_MHC_IP_R2	2	443.6918640136719	2	443.740691	885.466829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.033	1	36.796	36.296	37.296	0.76338								0	0	0	0.16876	1	13100	13100		12.532	0	1				56411	14828	41055	41383	55084	55084					0.019514435778546613
TVQRAQHVFQH	11	Unmodified	_TVQRAQHVFQH_					0	0	0		ENSG00000108578|ENST00000261714|BLMH	ENSG00000108578|ENST00000261714|BLMH	ENSG00000108578|ENST00000261714|BLMH	MSMS	A375_MHC_IP_R1	1	675.7618408203125	2	675.854909	1349.69527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.256	1	81.256	80.756	81.756	0								0	0	0	0.16124	1	29691	29691		12.241	0.74595	1				56412	2816	41056	41384	55085	55085					0.03440616154739473
TVQRFTNALR	10	Unmodified	_TVQRFTNALR_					0	0	0			REV__B3GAT2|p.A109T|1|0.39|ENSG00000112309|chr6:70956105-70956105|C/T|missense_variant	REV__B3GAT2|p.A109T|1|0.39|ENSG00000112309|chr6:70956105-70956105|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	603.1278076171875	2	603.341104	1204.66765	-0.37285	-0.00022496	-0.56364	-0.00034007	-0.9365	-0.00056503	603.340773432457	91.765	0.25575	92.499	92.325	92.581	0.7345					5	4	2	0	0	0	0.92514	1	34844	34844		8.1555	0	1	1805700	+		56413	15493	41057	41385	55086	55086					0.07350712894503886
TVQSHTMGEV	10	Unmodified	_TVQSHTMGEV_					0	0	0		tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	363.2828063964844	3	363.506213	1087.49681	0.29707	0.00010799	1.7302	0.00062895	2.0273	0.00073694	363.50735066276906	51.892	1.4735	51.892	51.575	53.048	0					46	28	3	0	0	0	0.9269	1	18647	18647		1.7423	1.0446	1	2161000			56414	29742	41058	41386	55087	55087					-0.04343985539117057
TVQSIKREW	9	Unmodified	_TVQSIKREW_					0	0	0			REV__nc|ENSG00000132952|Q5W0Q7-2|USPL1	REV__nc|ENSG00000132952|Q5W0Q7-2|USPL1	MULTI-SECPEP	A375_MHC_IP_R1	1	382.2874450683594	3	382.880379	1145.61931	0.51491	0.00019715	-0.085787	-3.2846E-05	0.42912	0.0001643	382.8802197293846	35.599	0.30688	35.599	35.421	35.727	0					8	5	2	0	0	0	0.67483	1	11797	11797		10.151	2.5416	1	2107700	+		56415	18694	41059	41387	55088	55088					0.052322192545943835
TVQTVAAPQV	10	Unmodified	_TVQTVAAPQV_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2;SREBF2|p.Q237_V239del|1|0.59|ENSG00000198911|chr22:41868781-41868789|CAGCAGGTC/-|inframe_deletion	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-SECPEP	A375_MHC_IP_R1	1	507.9803771972656	2	507.284931	1012.55531	-0.50852	-0.00025796	1.8181	0.00092231	1.3096	0.00066434	507.7863250943375	65.452	0.15342	65.452	65.36	65.514	0					4	2	2	0	0	0	0.78945	1	23706	23706		13.906	2.2658	1	392910			56416	9366	41060	41388	55089	55089					0.04953439097653245
TVRAELTKLK	10	Unmodified	_TVRAELTKLK_					0	0	0			REV__CCDC60|p.G125E|1|0.58|ENSG00000183273|chr12:119479126-119479126|G/A|missense_variant	REV__CCDC60|p.G125E|1|0.58|ENSG00000183273|chr12:119479126-119479126|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	386.2695617675781	3	386.911679	1157.71321	-0.43058	-0.0001666	1.6109	0.00062327	1.1803	0.00045667	386.91239743058935	51.865	0.40816	52.617	52.372	52.78	0.75225					10	7	2	0	0	0	0.93873	1	19500	19500		2.8433	2.1456	1	1368700	+		56417	15596	41061	41389	55090	55090					0.14065938356861807
TVRDLVLRY	9	Unmodified	_TVRDLVLRY_					0	0	0			REV__ENST00000479896.1_1_10:129869671-129881167:+|nuORF	REV__ENST00000479896.1_1_10:129869671-129881167:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	378.93267822265625	3	378.892507	1133.65569	0.59548	0.00022562	-1.0337	-0.00039165	-0.4382	-0.00016603	378.892134201236	21.307	1.8277	21.307	20.895	22.723	0					70	35	3	0	0	0	0.7235	1	5696	5696		4.897	0.70751	1	8787000	+		56418	25240	41062	41390	55091	55091					0.09421096151299935
TVRELQAR	8	Unmodified	_TVRELQAR_					0	0	0		nc|ENSG00000078814|A7E2Y1|MYH7B;ENSG00000078814|ENST00000262873|MYH7B;nc|ENSG00000078814|A7E2Y1-3|MYH7B	nc|ENSG00000078814|A7E2Y1|MYH7B	nc|ENSG00000078814|A7E2Y1|MYH7B	MULTI-MSMS	A375_MHC_IP_R2	2	486.692138671875	2	486.78289	971.551228	-0.51262	-0.00024954	0.22579	0.00010991	-0.28684	-0.00013963	486.78293936603677	118.52	1.8785	119.13	118.59	120.47	0.60909					49	36	2	0	0	0	0.76248	1	44976	44976		16.942	0	1	24755000			56419	1684	41063	41391	55092	55092					0.06431394394610379
TVRELSLW	8	Unmodified	_TVRELSLW_					0	0	0		ENST00000466787.1_1_21:40763088-40763391:+|nuORF	ENST00000466787.1_1_21:40763088-40763391:+|nuORF	ENST00000466787.1_1_21:40763088-40763391:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	502.6821594238281	2	502.282192	1002.54983	-0.27607	-0.00013867	0.35678	0.0001792	0.080706	4.0537E-05	502.282411014542	56.669	0.60911	56.669	56.347	56.956	0					23	11	3	0	0	0	0.47739	2	20311	20304;20311		49.933	9.9757	1	3974000			56420	12265	41064	41392	55093;55094	55094					0.048657603058586574
TVRERGLIL	9	Unmodified	_TVRERGLIL_					0	0	0		ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	MULTI-SECPEP	A375_MHC_IP_R1	1	352.2379150390625	3	352.888986	1055.64513	0.27477	9.6963E-05	-0.0527	-1.8597E-05	0.22207	7.8365E-05	352.88865811649333	48.347	0.35355	48.347	48.173	48.526	0					10	6	2	0	0	0	0.67539	1	17045	17045		7.609	0	1	1432300			56421	10039	41065	41393	55095	55095					0.11953113496906553
TVRERGLIL	9	Unmodified	_TVRERGLIL_					0	0	0		ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	MULTI-MATCH	A375_MHC_IP_R2	2		3	352.888986	1055.64513	-0.051064	-1.802E-05	0.49591	0.000175	0.44484	0.00015698	352.8890176654368	47.3	0.30622	48.062	47.919	48.225	0.76128	-0.14269	0.00015461	NaN	7.609	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1746800			56422	10039	41065	41393							0.11953113496906553
TVRERLISL	9	Unmodified	_TVRERLISL_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	A375_MHC_IP_R1	1	363.2922668457031	3	362.892507	1085.65569	0.15314	5.5573E-05	-0.48691	-0.0001767	-0.33377	-0.00012112	362.8922672850321	33.368	0.30581	33.368	33.19	33.496	0					10	5	2	0	0	0	0.76642	1	10899	10899		8.9762	5.3892	1	3426100			56423	4099;14587	41066	41394	55096	55096					0.11629096151318663
TVRFNNYSY	9	Unmodified	_TVRFNNYSY_					0	0	0			REV__nc|ENSG00000009694|Q9UKZ4-2|TENM1	REV__nc|ENSG00000009694|Q9UKZ4-2|TENM1	MSMS	A375_MHC_IP_R1	1	582.18017578125	2	582.277638	1162.54072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.135	1	45.135	44.635	45.635	0								0	0	0	0.15486	1	15781	15781		11.64	0.81637	1		+		56424	16185	41067	41395	55097	55097					-0.03404633050490702
TVRFTTKQV	9	Unmodified	_TVRFTTKQV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R1	1	361.2452697753906	3	360.545108	1078.61349	-0.14984	-5.4025E-05	0.27961	0.00010081	0.12976	4.6785E-05	360.54517280491615	30.772	0.35513	30.772	30.553	30.908	0					12	6	2	0	0	0	0.78753	1	9862	9862		0.96228	0	1	1050100	+		56425	19932	41068	41396	55098	55098					0.07733120742932442
TVRGEEDFF	9	Unmodified	_TVRGEEDFF_					0	0	0		GPLD1|p.S578F|1|0.08|ENSG00000112293|chr6:24446925-24446925|G/A|missense_variant	GPLD1|p.S578F|1|0.08|ENSG00000112293|chr6:24446925-24446925|G/A|missense_variant	GPLD1|p.S578F|1|0.08|ENSG00000112293|chr6:24446925-24446925|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6557006835938	2	550.256371	1098.49819	-0.67961	-0.00037396	0.35687	0.00019637	-0.32274	-0.00017759	550.2564916707355	68.977	0.45707	69.712	69.474	69.932	0.73511					15	8	2	0	0	0	0.50702	1	26164	26164		19.257	0	1	1330200			56426	14061	41069	41397	55099	55099					-0.04712028178732908
TVRHSPSLV	9	Unmodified	_TVRHSPSLV_					0	0	0			REV__VAV1|p.P18S|1|0.22|ENSG00000141968|chr19:6772859-6772859|C/T|missense_variant	REV__VAV1|p.P18S|1|0.22|ENSG00000141968|chr19:6772859-6772859|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	498.6855163574219	2	498.285266	994.555979	-0.27774	-0.00013839	-0.58887	-0.00029343	-0.86661	-0.00043182	498.28521768206286	51.313	0.5063	51.313	51.068	51.575	0					15	9	3	0	0	0	0.56537	1	18251	18251		29.082	12.139	1	1580200	+		56427	28977	41070	41398	55100	55100					0.05848278537371243
TVRIITAI	8	Unmodified	_TVRIITAI_					0	0	0		nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;nc|ENSG00000107736|Q9H251-6|CDH23;nc|ENSG00000107736|Q9H251-5|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-SECPEP	A375_MHC_IP_R1	1	444.18914794921875	2	443.789653	885.564752	-0.1151	-5.1081E-05	0.098466	4.3698E-05	-0.016635	-7.3824E-06	443.7895832840749	87.517	0.45859	87.517	87.289	87.747	0					15	8	3	0	0	0	0.87023	1	32123	32123		34.402	0	1	2263800			56428	2753	41071	41399	55101	55101					0.11739252173822479
TVRIITAI	8	Unmodified	_TVRIITAI_					0	0	0		nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;nc|ENSG00000107736|Q9H251-6|CDH23;nc|ENSG00000107736|Q9H251-5|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-SECPEP	A375_MHC_IP_R2	2	444.1895446777344	2	443.789653	885.564752	-0.216	-9.5858E-05	0.10884	4.83E-05	-0.10716	-4.7557E-05	443.7896229064689	86.433	0.41003	87.166	86.896	87.306	0.73301					13	7	2	0	0	0	0.87023	1	32889	32889		21.537	0	1	1200100			56429	2753	41071	41399	55102	55102					0.11739252173822479
TVRIRRKRRR	10	Unmodified	_TVRIRRKRRR_					0	0	0		ENST00000480896.5_1_21:47746291-47746405:+|nuORF	ENST00000480896.5_1_21:47746291-47746405:+|nuORF	ENST00000480896.5_1_21:47746291-47746405:+|nuORF	MSMS	A375_MHC_IP_R2	2	698.9513549804688	2	698.963452	1395.91235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.62	1	123.96	123.46	124.46	0.33947								0	0	0	0.15591	1	47586	47586		1.6526	0.17072	1				56430	12504	41072	41400	55103	55103					0.2302305621878986
TVRISMTSA	9	Unmodified	_TVRISMTSA_					0	0	0			REV__nc|ENSG00000170421|P05787-2|KRT8	REV__nc|ENSG00000170421|P05787-2|KRT8	MULTI-SECPEP	A375_MHC_IP_R1	1	483.65765380859375	2	483.257859	964.501166	-0.36422	-0.00017601	-0.50801	-0.0002455	-0.87223	-0.00042151	483.2577890367359	40.042	1.2696	40.042	39.643	40.913	0					46	24	2	0	0	0	0.41434	1	13804	13804		26.268	9.1552	1	2024300	+		56431	27350	41073	41401	55104	55104					0.01749523674448028
TVRKEMELL	9	Unmodified	_TVRKEMELL_					0	0	0			REV__ENST00000548908.2_1_12:80173092-80180670:-|nuORF	REV__ENST00000548908.2_1_12:80173092-80180670:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	373.94598388671875	3	373.54612	1117.61653	-0.054059	-2.0194E-05	0.17885	6.6809E-05	0.12479	4.6616E-05	373.54612058726696	56.785	0.30563	57.535	57.356	57.662	0.75015					10	5	2	0	0	0	0.73415	1	21503	21503		2.2828	0	1	1853200	+		56432	26019	41074	41402	55105	55105					0.06242627805431766
TVRKEMELL	9	Unmodified	_TVRKEMELL_					0	0	0			REV__ENST00000548908.2_1_12:80173092-80180670:-|nuORF	REV__ENST00000548908.2_1_12:80173092-80180670:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	373.54612	1117.61653	0.32728	0.00012226	0.32883	0.00012283	0.65611	0.00024509	373.54615129591156	57.731	0.20392	57.731	57.618	57.822	0	0.09777	0.00011293	NaN	2.2828	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	905200	+		56433	26019	41074	41402							0.06242627805431766
TVRLARFF	8	Unmodified	_TVRLARFF_					0	0	0			REV__ENST00000523300.5_1_8:21906721-21927027:+|nuORF	REV__ENST00000523300.5_1_8:21906721-21927027:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	505.686767578125	2	505.300719	1008.58688	-0.69813	-0.00035277	-1.5766	-0.00079664	-2.2747	-0.0011494	505.2998077975931	76.721	0.812	77.462	76.943	77.755	0.74052					24	15	2	0	0	0	0.972	1	28943	28943		5.7604	0	1	881240	+		56434	25741	41075	41403	55106	55106					0.08293476642279529
TVRMRLCQL	9	Unmodified	_TVRMRLCQL_					0	0	0			REV__ENST00000375722.5_1_X:51636633-51636675:+|nuORF	REV__ENST00000375722.5_1_X:51636633-51636675:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	560.1949462890625	2	560.309903	1118.60525	-1.0585	-0.00059308	-1.4768	-0.00082749	-2.5353	-0.0014206	560.3090483500984	59.236	0.20214	59.983	59.845	60.047	0.74714					5	3	2	0	0	0	0.65246	1	22415	22415		6.7232	6.7232	1	565530	+		56435	24133	41076	41404	55107	55107					0.05069527230307358
TVRNVFGP	8	Unmodified	_TVRNVFGP_					0	0	0		nc|ENSG00000100473|O43405-2|COCH;ENSG00000100473|ENST00000396618|COCH	nc|ENSG00000100473|O43405-2|COCH	nc|ENSG00000100473|O43405-2|COCH	MULTI-SECPEP	A375_MHC_IP_R2	2	445.6172790527344	2	445.248152	888.481751	-0.39936	-0.00017782	-0.3176	-0.00014141	-0.71696	-0.00031923	445.2479500435677	32.229	0.15313	32.966	32.857	33.01	0.73692					4	2	2	0	0	0	0.972	1	11410	11410		0.69038	0	1	765630			56436	2183	41077	41405	55108	55108					0.033049354458512425
TVRRCTREF	9	Unmodified	_TVRRCTREF_					0	0	0		ENSG00000168418|ENST00000308251|KCNG4;KCNG4|p.G372D|1|0.3|ENSG00000168418|chr16:84222662-84222662|C/T|missense_variant	ENSG00000168418|ENST00000308251|KCNG4	ENSG00000168418|ENST00000308251|KCNG4	MULTI-SECPEP	A375_MHC_IP_R1	1	584.1875	2	584.306207	1166.59786	-0.26336	-0.00015389	-0.92687	-0.00054157	-1.1902	-0.00069546	584.3056613282566	46.399	0.24991	46.399	46.195	46.444	0					6	4	2	0	0	0	0.74412	1	16280	16280		10.074	10.074	1	1416700			56437	7299	41078	41406	55109	55109					0.021225109542456266
TVRRLAEQKKA	11	Unmodified	_TVRRLAEQKKA_					0	0	0			REV__ENST00000434568.5_1_22:19121711-19126708:-|nuORF	REV__ENST00000434568.5_1_22:19121711-19126708:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	433.2846984863281	3	433.933366	1298.77827	-0.40076	-0.0001739	-0.83701	-0.0003632	-1.2378	-0.00053711	433.9329392383101	131.17	1.5652	131.17	130.72	132.28	0					66	30	3	0	0	0	0.99676	1	50834	50834		1.2148	0.10508	1	9053600	+		56438	17046	41079	41407	55110	55110					0.14082932882729438
TVRRLAEQKKA	11	Unmodified	_TVRRLAEQKKA_					0	0	0			REV__ENST00000434568.5_1_22:19121711-19126708:-|nuORF	REV__ENST00000434568.5_1_22:19121711-19126708:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	433.933366	1298.77827	-0.25021	-0.00010858	-1.1007	-0.00047764	-1.3509	-0.00058622	433.9328193824236	130.83	1.7768	131.04	130.55	132.33	0.21419	-0.064602	-0.0001511	NaN	1.2148	79	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10130000	+		56439	17046	41079	41407							0.14082932882729438
TVRRLVLPAV	10	Unmodified	_TVRRLVLPAV_					0	0	0		ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-4|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;nc|ENSG00000124006|O75147-1|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF	ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-1|OBSL1	ENSG00000124006|ENST00000404537|OBSL1	MSMS	A375_MHC_IP_R2	2	375.2855224609375	3	375.248514	1122.72371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.139	1	63.882	63.382	64.382	0.74263								0	0	0	0.15593	1	23937	23937		1.5923	0.52082	1				56440	3867;14575	41080	41408	55111	55111					0.16725965801970233
TVRRTWRRRRR	11	Unmodified	_TVRRTWRRRRR_					0	0	0			REV__ENST00000281708.8_1_4:153271275-153332654:-|nuORF	REV__ENST00000281708.8_1_4:153271275-153332654:-|nuORF	MSMS	A375_MHC_IP_R1	1	799.576904296875	2	799.987989	1597.96143	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.28	1	110.28	109.78	110.78	0								0	0	0	0.16354	1	40437	40437		0.30703	0.30703	1		+		56441	23317	41081	41409	55112	55112					0.18636344507740432
TVRRTWRRRRR	11	Unmodified	_TVRRTWRRRRR_					0	0	0			REV__ENST00000281708.8_1_4:153271275-153332654:-|nuORF	REV__ENST00000281708.8_1_4:153271275-153332654:-|nuORF	MSMS	A375_MHC_IP_R1	1	800.2376708984375	2	799.987989	1597.96143	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.13	1	140.13	139.63	140.63	0								0	0	0	0.16353	1	53833	53833		0.35063	0.35063	1		+		56442	23317	41081	41409	55113	55113					0.18636344507740432
TVRSEVAMK	9	Unmodified	_TVRSEVAMK_					0	0	0			REV__ENSG00000150459|ENST00000382533|SAP18	REV__ENSG00000150459|ENST00000382533|SAP18	MSMS	A375_MHC_IP_R1	1	510.6758117675781	2	510.778959	1019.54336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.85	1	129.85	129.35	130.35	0								0	0	0	0.14851	1	49950	49950		24.021	2.2739	1		+		56443	19713	41082	41410	55114	55114					0.03437499082826889
TVRTMLWLI	9	Unmodified	_TVRTMLWLI_					0	0	0			REV__ENST00000543397.1_1_12:64488769-64491083:+|nuORF	REV__ENST00000543397.1_1_12:64488769-64491083:+|nuORF	MSMS	A375_MHC_IP_R1	1	378.26068115234375	3	378.223088	1131.64744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.681	1	25.681	25.181	26.181	0								0	0	0	0.15486	1	7536	7536		8.1555	0.54658	1		+		56444	25978	41083	41411	55115	55115					0.08687825910351421
TVRTRLLV	8	Unmodified	_TVRTRLLV_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000555519.5_1_12:56744194-56744946:-|nuORF	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MULTI-MSMS	A375_MHC_IP_R1	1	479.71380615234375	2	479.313826	956.613099	-0.14329	-6.8682E-05	-0.071771	-3.4401E-05	-0.21506	-0.00010308	479.31373606678346	49.666	0.50897	49.666	49.387	49.896	0					23	9	3	0	0	0	0.66714	1	17537	17537		42.095	2.1372	1	13400000			56445	7523	41084	41412	55116	55116					0.13305745813750036
TVRTSRRHQ	9	Unmodified	_TVRTSRRHQ_					0	0	0		ENST00000463710.1_1_22:20102137-20102676:-|nuORF;ENST00000492988.5_1_22:20102137-20102943:-|nuORF;ENST00000494820.5_1_22:20100432-20103278:-|nuORF;nc|ENSG00000099899|Q8IZ69-2|TRMT2A;ENSG00000099899|ENST00000252136|TRMT2A	ENST00000463710.1_1_22:20102137-20102676:-|nuORF	ENST00000463710.1_1_22:20102137-20102676:-|nuORF	MSMS	A375_MHC_IP_R2	2	380.9499206542969	3	380.883005	1139.62719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.453	1	29.132	28.632	29.632	0.67857								0	0	0	0.15486	1	9823	9823		6.6304	0	1				56446	2090	41085	41413	55117	55117					0.0629579129472404
TVRVCWDLQL	10	Unmodified	_TVRVCWDLQL_					0	0	0		BRAP|p.S578Qfs*51|1|0.49|ENSG00000089234|chr12:111644247-111644248|-/C|frameshift_variant	BRAP|p.S578Qfs*51|1|0.49|ENSG00000089234|chr12:111644247-111644248|-/C|frameshift_variant	BRAP|p.S578Qfs*51|1|0.49|ENSG00000089234|chr12:111644247-111644248|-/C|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	616.690185546875	2	616.82644	1231.63833	-0.39603	-0.00024428	-2.0983	-0.0012943	-2.4944	-0.0015386	617.3267257925744	64.657	0.66143	64.657	64.242	64.903	0					23	12	3	0	0	0	0.92227	1	23455	23455		5.2969	0.76802	1	2060000			56447	247	41086	41414	55118	55118					0.03177432554002735
TVRVIGFDL	9	Unmodified	_TVRVIGFDL_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	A375_MHC_IP_R2	2	510.45098876953125	2	510.297842	1018.58113	-1.033	-0.00052714	0.15745	8.0349E-05	-0.87555	-0.00044679	510.2978489101067	54.19	0.81214	54.941	54.66	55.473	0.75075					19	15	2	0	0	0	0.65246	1	20566	20566		10.824	4.1008	1	2429400	+		56448	20029	41087	41415	55119	55119					0.07258333339962064
TVRVMKKIK	9	Unmodified	_TVRVMKKIK_					0	0	0			REV__tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1	REV__tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1	MSMS	A375_MHC_IP_R2	2	368.2767333984375	3	368.242483	1101.70562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.971	1	62.713	62.213	63.213	0.74263								0	0	0	0.15486	1	23489	23489		2.2828	0	1		+		56449	28189	41088	41416	55120	55120					0.15883507555599863
TVRYQRAI	8	Unmodified	_TVRYQRAI_					0	0	0		ENST00000507562.1_1_5:148725314-148730842:+|nuORF;ENSG00000164284|ENST00000329271|GRPEL2	ENST00000507562.1_1_5:148725314-148730842:+|nuORF	ENST00000507562.1_1_5:148725314-148730842:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1613464355469	2	503.793258	1005.57196	-0.59879	-0.00030167	-0.10354	-5.2165E-05	-0.70234	-0.00035383	503.7931900901692	42.453	0.45836	43.226	43.014	43.472	0.7724					14	8	2	0	0	0	0.94479	1	15748	15748		8.5933	0	1	4021100			56450	6811	41089	41417	55121	55121					0.06939984774271579
TVSACPQTKCV	11	Unmodified	_TVSACPQTKCV_					0	0	0		VWC2|p.E258K|4|0.41|ENSG00000188730|chr7:49802786-49802786|G/A|missense_variant	VWC2|p.E258K|4|0.41|ENSG00000188730|chr7:49802786-49802786|G/A|missense_variant	VWC2|p.E258K|4|0.41|ENSG00000188730|chr7:49802786-49802786|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	568.6846313476562	2	568.775559	1135.53657	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.555	1	43.555	43.055	44.055	0								0	0	0	0.14837	1	15149	15149		21.537	5.6898	1				56451	30153	41090	41418	55122	55122					-0.025781818600762563
TVSCPEWLGW	10	Unmodified	_TVSCPEWLGW_					0	0	0			REV__CFP|p.P144L|1|0.48|ENSG00000126759|chrX:47627614-47627614|G/A|missense_variant	REV__CFP|p.P144L|1|0.48|ENSG00000126759|chrX:47627614-47627614|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	588.6554565429688	2	589.270967	1176.52738	-0.27602	-0.00016265	1.2137	0.00071522	0.93773	0.00055258	589.2722215514449	46.129	0.70651	46.129	45.839	46.545	0					16	13	2	0	0	0	0.85226	1	16207	16207		10.074	2.465	1	677560	+		56452	15654	41091	41419	55123	55123					-0.05382207154070784
TVSEAGRRDA	10	Unmodified	_TVSEAGRRDA_					0	0	0			REV__nc|ENSG00000126561|P42229-2|STAT5A	REV__nc|ENSG00000126561|P42229-2|STAT5A	MULTI-MSMS	A375_MHC_IP_R2	2	532.2362060546875	2	531.270344	1060.52613	-0.84031	-0.00044643	1.8987	0.0010087	1.0583	0.00056227	531.2710996647977	54.67	0.86307	55.42	54.916	55.779	0.75075					30	16	3	0	0	0	0.63639	1	20596	20596		18.146	1.2041	1	11759000	+		56453	18388	41092	41420	55124	55124					-0.0017070519861590583
TVSENLNGIY	10	Unmodified	_TVSENLNGIY_					0	0	0			REV__ENSG00000159217|ENST00000290341|IGF2BP1;REV__IGF2BP1|p.P15L|1|0.25|ENSG00000159217|chr17:48997789-48997789|C/T|missense_variant	REV__IGF2BP1|p.P15L|1|0.25|ENSG00000159217|chr17:48997789-48997789|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	554.5579223632812	2	555.277303	1108.54005	-0.36406	-0.00020215	-0.74046	-0.00041116	-1.1045	-0.00061331	555.7782298873473	109.84	0.50964	109.84	109.58	110.09	0					20	9	3	0	0	0	0.90853	1	40206	40206		10.824	2.2306	1	1110700	+		56454	20106;26779	41093	41421	55125	55125					-0.009874724901692389
TVSENLNGIY	10	Unmodified	_TVSENLNGIY_					0	0	0			REV__ENSG00000159217|ENST00000290341|IGF2BP1;REV__IGF2BP1|p.P15L|1|0.25|ENSG00000159217|chr17:48997789-48997789|C/T|missense_variant	REV__IGF2BP1|p.P15L|1|0.25|ENSG00000159217|chr17:48997789-48997789|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	555.277303	1108.54005	-0.70363	-0.00039071	-0.39534	-0.00021952	-1.099	-0.00061023	555.7781665662692	109.06	0.56287	109.81	109.52	110.08	0.74684	-0.019782	0.0001508	NaN	10.824	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1128100	+		56455	20106;26779	41093	41421							-0.009874724901692389
TVSEPRYF	8	Unmodified	_TVSEPRYF_					0	0	0		ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;ENST00000478389.5_1_20:57566845-57568278:+|nuORF	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	500.1505432128906	2	499.750724	997.486896	-0.50046	-0.0002501	0.12652	6.3226E-05	-0.37394	-0.00018688	499.7506713633571	46.67	1.0206	46.67	46.345	47.366	0					45	19	4	0	0	0	0.2241	3	16357	16344;16357;16643		65.235	25.278	1	11747000			56456	2257	41094	41422	55126;55127;55128	55127					-0.011948054821914411
TVSEPRYF	8	Unmodified	_TVSEPRYF_					0	0	0		ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;ENST00000478389.5_1_20:57566845-57568278:+|nuORF	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	500.15045166015625	2	499.750724	997.486896	-0.51638	-0.00025806	0.075952	3.7957E-05	-0.44043	-0.00022011	499.75071993183906	45.876	1.0113	46.641	46.353	47.364	0.76519					47	19	3	0	0	0	0.68964	1	17126	17126		37.974	11.09	1	11833000			56457	2257	41094	41422	55129	55129					-0.011948054821914411
TVSEQVQLW	9	Unmodified	_TVSEQVQLW_					0	0	0			REV__CD33|p.V31I|1|0.5|ENSG00000105383|chr19:51225271-51225271|G/A|missense_variant	REV__CD33|p.V31I|1|0.5|ENSG00000105383|chr19:51225271-51225271|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	545.00537109375	2	545.282389	1088.55022	-1.0767	-0.00058709	-0.18528	-0.00010103	-1.2619	-0.00068812	545.7826356583632	58.134	0.25083	58.883	58.729	58.98	0.74894					6	4	2	0	0	0	0.55359	1	22000	22000		28.487	12.64	1	1529600	+		56458	15614	41095	41423	55130	55130					0.009491352350551097
TVSHQKEKPV	10	Unmodified	_TVSHQKEKPV_					0	0	0		DPYD|p.G862E|1|0.64|ENSG00000188641|chr1:97193106-97193106|C/T|missense_variant	DPYD|p.G862E|1|0.64|ENSG00000188641|chr1:97193106-97193106|C/T|missense_variant	DPYD|p.G862E|1|0.64|ENSG00000188641|chr1:97193106-97193106|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	385.13763427734375	3	384.8839	1151.62987	-0.37464	-0.00014419	-0.3621	-0.00013936	-0.73673	-0.00028356	384.8835315533574	51.648	0.45814	52.4	52.219	52.677	0.75225					12	8	2	0	0	0	0.93961	1	19532	19532		0.10794	0	1	1565000			56459	796	41096	41424	55131	55131					0.060122019090158574
TVSKALAL	8	Unmodified	_TVSKALAL_					0	0	0		ENSG00000170790|ENST00000641461|OR10A2	ENSG00000170790|ENST00000641461|OR10A2	ENSG00000170790|ENST00000641461|OR10A2	MULTI-SECPEP	A375_MHC_IP_R1	1	402.1553039550781	2	401.755278	801.496004	-0.27198	-0.00010927	0.48383	0.00019438	0.21184	8.5109E-05	401.75543026701223	63.248	0.46247	63.248	62.914	63.377	0					13	8	2	0	0	0	0.64713	1	22848	22848		29.082	0	1	2486800			56460	7540	41097	41425	55132	55132					0.0873158787412649
TVSLCAATHPW	11	Unmodified	_TVSLCAATHPW_					0	0	0			REV__ENST00000393085.3_1_7:135614431-135614677:-|nuORF	REV__ENST00000393085.3_1_7:135614431-135614677:-|nuORF	MSMS	A375_MHC_IP_R1	1	593.2244262695312	2	593.289691	1184.56483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.63	1	102.63	102.13	103.13	0								0	0	0	0.16179	1	37716	37716		9.3831	1.473	1		+		56461	24287	41098	41426	55133	55133					-0.020071158884547913
TVSLKWSPPA	10	Unmodified	_TVSLKWSPPA_					0	0	0		EPHA7|p.E350K|1|0.29|ENSG00000135333|chr6:93356993-93356993|C/T|missense_variant	EPHA7|p.E350K|1|0.29|ENSG00000135333|chr6:93356993-93356993|C/T|missense_variant	EPHA7|p.E350K|1|0.29|ENSG00000135333|chr6:93356993-93356993|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	543.6613159179688	2	543.303124	1084.5917	-0.66037	-0.00035878	0.34142	0.0001855	-0.31895	-0.00017329	543.3029334709133	95.375	1.0115	95.375	95.007	96.018	0					33	19	2	0	0	0	0.37864	1	35118	35118		38.176	0	1	1471700			56462	13946	41099	41427	55134	55134					0.05278315994382865
TVSLKWSPPA	10	Unmodified	_TVSLKWSPPA_					0	0	0		EPHA7|p.E350K|1|0.29|ENSG00000135333|chr6:93356993-93356993|C/T|missense_variant	EPHA7|p.E350K|1|0.29|ENSG00000135333|chr6:93356993-93356993|C/T|missense_variant	EPHA7|p.E350K|1|0.29|ENSG00000135333|chr6:93356993-93356993|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	543.6609497070312	2	543.303124	1084.5917	-0.57586	-0.00031287	0.19425	0.00010554	-0.3816	-0.00020733	543.3028719145302	94.656	1.1182	95.401	95.02	96.138	0.74474					30	21	2	0	0	0	0.51493	1	36030	36030		31.268	0	1	1311200			56463	13946	41099	41427	55135	55135					0.05278315994382865
TVSLWDCDRK	10	Unmodified	_TVSLWDCDRK_					0	0	0		ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	MULTI-MSMS	A375_MHC_IP_R1	1	408.4333801269531	3	408.201012	1221.58121	-0.29496	-0.0001204	-2.1252	-0.00086751	-2.4202	-0.00098791	408.53542035459117	25.622	0.50875	25.622	25.408	25.917	0					12	9	2	0	0	0	0.70651	1	7621	7621		5.4027	0	1	2304200			56464	2642	41100	41428	55136	55136					-0.020720347223686986
TVSNFRGSM	9	Unmodified	_TVSNFRGSM_					0	0	0		ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	MSMS	A375_MHC_IP_R1	1	499.6531066894531	2	499.739834	997.465115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.397	1	65.397	64.897	65.897	0								0	0	0	0.15411	1	23675	23675		14.838	0.25658	1				56465	5716	41101	41429	55137	55137					-0.033719335023988606
TVSPDQFPNVD	11	Unmodified	_TVSPDQFPNVD_					0	0	0			REV__ENST00000563829.5_1_15:75146292-75165596:-|nuORF	REV__ENST00000563829.5_1_15:75146292-75165596:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	609.3919067382812	2	609.785492	1217.55643	-0.35237	-0.00021487	0.11669	7.1156E-05	-0.23568	-0.00014372	609.7855841025843	68.309	0.50542	69.044	68.867	69.373	0.73511					13	9	2	0	0	0	0.99507	1	25973	25973		4.5289	4.5289	1	2345000	+		56466	19218	41102	41430	55138	55138					-0.043643913241112386
TVSPFIAVFS	10	Unmodified	_TVSPFIAVFS_					0	0	0			REV__nc|nan|A6NJI1|C11orf86	REV__nc|nan|A6NJI1|C11orf86	MULTI-SECPEP	A375_MHC_IP_R2	2	533.705078125	2	534.292225	1066.5699	-1.2669	-0.00067688	-1.0825	-0.00057838	-2.3494	-0.0012553	534.7905710158745	53.653	0.25619	54.404	54.249	54.505	0.75105					6	4	2	0	0	0	0.87163	1	20206	20206		13.906	0	1	545120	+		56467	21207	41103	41431	55139	55139					0.03927511245797177
TVSQDSAWY	9	Unmodified	_TVSQDSAWY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;TTN|p.L14011*|1|0.26|ENSG00000155657|chr2:178618595-178618595|A/-|frameshift_variant;TTN|p.V5956Efs*8|1|0.3|ENSG00000155657|chr2:178729292-178729338|CAGGGCAACTCTAGTACTGCATGAGCAGCTGCCGCCTTCATTGGATA/-|frameshift_variant;TTN|p.F5884Lfs*5|1|0.04|ENSG00000155657|chr2:178729553-178729553|A/-|frameshift_variant;TTN|p.D2189Tfs*17|1|0.21|ENSG00000155657|chr2:178775147-178775147|T/-|frameshift_variant;TTN|p.S1619F|1|0.4|ENSG00000155657|chr2:178777008-178777008|G/A|missense_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R2	2	529.1350708007812	2	528.735271	1055.45599	-0.48145	-0.00025456	-0.026279	-1.3895E-05	-0.50773	-0.00026845	528.7355160484951	83.879	0.87036	84.618	84.152	85.022	0.73962					41	16	4	0	0	0	0.64808	1	31913	31913		11.64	2.2929	1	4698000			56468	6151;14694;14693	41104	41432	55140	55140					-0.06952003587093714
TVSREDSQRPG	11	Unmodified	_TVSREDSQRPG_					0	0	0		ENST00000457695.2_1_X:100110922-100111255:-|nuORF	ENST00000457695.2_1_X:100110922-100111255:-|nuORF	ENST00000457695.2_1_X:100110922-100111255:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	616.7042236328125	2	616.304915	1230.59528	-0.30162	-0.00018589	-0.82465	-0.00050824	-1.1263	-0.00069413	616.3045266395746	50.889	1.3193	50.889	50.459	51.778	0					63	25	4	0	0	0	0.73016	1	18218	18218		8.7454	8.7454	1	22272000			56469	12143	41105	41433	55141	55141					-0.010796659697234645
TVSSRKQVT	9	Unmodified	_TVSSRKQVT_					0	0	0		ENSG00000174417|ENST00000518632|TRHR	ENSG00000174417|ENST00000518632|TRHR	ENSG00000174417|ENST00000518632|TRHR	MULTI-SECPEP	A375_MHC_IP_R2	2	502.6961364746094	2	503.288005	1004.56146	-1.1389	-0.00057318	3.1169	0.0015687	1.978	0.00099552	503.2893243919561	53.628	0.359	54.379	54.198	54.557	0.75105					9	6	2	0	0	0	0.53748	1	20195	20195		18.146	0	1	1129400			56470	7875	41106	41434	55142	55142					0.05935957329199937
TVSTLFPLF	9	Unmodified	_TVSTLFPLF_					0	0	0			REV__ENSG00000213171|ENST00000368820|LINGO4	REV__ENSG00000213171|ENST00000368820|LINGO4	MSMS	A375_MHC_IP_R1	1	512.7009887695312	2	512.789318	1023.56408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.347	1	53.347	52.847	53.847	0								0	0	0	0.1535	1	19015	19015		15.847	0	1		+		56471	22617	41107	41435	55143	55143					0.053244127341372405
TVSTRWVRP	9	Unmodified	_TVSTRWVRP_					0	0	0		ENST00000496425.1_1_20:62373927-62374363:+|nuORF	ENST00000496425.1_1_20:62373927-62374363:+|nuORF	ENST00000496425.1_1_20:62373927-62374363:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	367.123779296875	3	367.876969	1100.60908	0.055055	2.0253E-05	-0.34805	-0.00012804	-0.29299	-0.00010779	367.87690600807485	51.197	0.45565	51.949	51.713	52.169	0.75225					14	8	2	0	0	0	0.73363	1	19297	19297		4.1895	0.31317	1	973330			56472	12726	41108	41436	55144	55144					0.06279656320020877
TVSVFALNVSF	11	Unmodified	_TVSVFALNVSF_					0	0	0		ENST00000398527.6_1_X:11776774-11777916:+|nuORF	ENST00000398527.6_1_X:11776774-11777916:+|nuORF	ENST00000398527.6_1_X:11776774-11777916:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	395.6167297363281	3	395.216768	1182.62847	-0.081529	-3.2222E-05	-1.2466	-0.0004927	-1.3282	-0.00052492	395.21629682200523	34.477	0.96228	34.477	33.898	34.861	0					41	18	4	0	0	0	0.71476	1	11301	11301		8.2864	2.7631	1	9219100			56473	11520	41109	41437	55145	55145					0.04446567820264136
TVSVLPEGPV	10	Unmodified	_TVSVLPEGPV_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	A375_MHC_IP_R1	1	499.68170166015625	2	499.281857	996.549162	-0.28624	-0.00014291	-0.13942	-6.9609E-05	-0.42566	-0.00021252	499.28171073943986	40.449	0.40633	40.449	40.254	40.66	0					21	7	3	0	0	0	0.24499	1	13886	13886		52.268	4.674	1	10978000			56474	5332	41110	41438	55146	55146					0.05074920866138655
TVSVLPEGPV	10	Unmodified	_TVSVLPEGPV_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	A375_MHC_IP_R2	2	499.6814270019531	2	499.281857	996.549162	-0.58257	-0.00029086	0.14236	7.1077E-05	-0.44021	-0.00021979	499.2818231538018	39.677	0.45691	40.451	40.219	40.676	0.77451					19	8	3	0	0	0	0.16517	1	14639	14639		52.268	10.429	1	13605000			56475	5332	41110	41438	55147	55147					0.05074920866138655
TVSVSRSMDLF	11	Unmodified	_TVSVSRSMDLF_					0	0	0			REV__HIP1|p.S205F|1|0.33|ENSG00000127946|chr7:75573892-75573892|G/A|missense_variant	REV__HIP1|p.S205F|1|0.33|ENSG00000127946|chr7:75573892-75573892|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	621.7103271484375	2	621.313363	1240.61217	-0.87002	-0.00054056	-2.6138	-0.001624	-3.4838	-0.0021645	621.3112680493983	48.914	0.56103	49.671	49.434	49.995	0.75737					17	10	2	0	0	0	0.71172	1	18439	18439		31.268	0	1	1968700	+		56476	26743	41111	41439	55148	55148					0.0014911859186668153
TVSYLRSFL	9	Unmodified	_TVSYLRSFL_					0	0	0		ENST00000479668.5_1_7:150070332-150070461:+|nuORF	ENST00000479668.5_1_7:150070332-150070461:+|nuORF	ENST00000479668.5_1_7:150070332-150070461:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	544.20458984375	2	543.303124	1084.5917	-0.77418	-0.00042062	0.1257	6.8296E-05	-0.64848	-0.00035232	543.303162462255	104.02	0.81438	104.78	104.55	105.36	0.76308					32	15	3	0	0	0	0.05754	1	39338	39338		61.357	5.8547	1	10131000			56477	12481	41112	41440	55149	55149					0.05278315994382865
TVTATIDPCV	10	Unmodified	_TVTATIDPCV_					0	0	0			REV__ENSG00000178921|ENST00000314666|PFAS	REV__ENSG00000178921|ENST00000314666|PFAS	MULTI-SECPEP	A375_MHC_IP_R1	1	510.45147705078125	2	510.257525	1018.5005	-0.43174	-0.0002203	-0.0093053	-4.7481E-06	-0.44104	-0.00022504	510.25747608873667	60.225	0.3569	60.225	60.006	60.363	0					9	6	2	0	0	0	0.85226	1	21709	21709		14.838	0	1	841100	+		56478	21526	41113	41441	55150	55150					-0.008013157652726477
TVTAVHDAIL	10	Unmodified	_TVTAVHDAIL_					0	0	0		ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENST00000444127.1_1_1:68708159-68708657:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	519.6478271484375	2	520.292756	1038.57096	-0.96974	-0.00050455	-0.51314	-0.00026698	-1.4829	-0.00077153	520.292672349438	58.594	0.61074	59.343	58.829	59.44	0.74894					17	11	3	0	0	0	0.64716	1	22186	22186		29.082	1.4528	1	1329700			56479	12011	41114	41442	55151	55151					0.053217256147036096
TVTCASWPSW	10	Unmodified	_TVTCASWPSW_					0	0	0			REV__ENSG00000186340|ENST00000617924|THBS2	REV__ENSG00000186340|ENST00000617924|THBS2	MSMS	A375_MHC_IP_R1	1	569.2371826171875	2	569.255317	1136.49608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.729	1	46.729	46.229	47.229	0								0	0	0	0.14862	1	16411	16411		20.454	2.3186	1		+		56480	21965	41115	41443	55152	55152					-0.06670780188187564
TVTDKIQRL	9	Unmodified	_TVTDKIQRL_					0	0	0			REV__nc|ENSG00000151208|Q8TDM6-2|DLG5	REV__nc|ENSG00000151208|Q8TDM6-2|DLG5	MULTI-MSMS	A375_MHC_IP_R2	2	358.9485168457031	3	358.548629	1072.62406	-0.27056	-9.7009E-05	0.25491	9.1399E-05	-0.015647	-5.6101E-06	358.5486150724548	32.799	0.40582	33.536	33.265	33.671	0.73691					15	7	3	0	0	0	0.37338	1	11739	11739		26.021	0	1	2681200	+		56481	19742	41116	41444	55153	55153					0.09065103397369967
TVTEGAMQL	9	Unmodified	_TVTEGAMQL_					0	0	0			REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	MULTI-SECPEP	A375_MHC_IP_R2	2	474.5996398925781	2	475.236593	948.458632	-0.55049	-0.00026161	-0.20186	-9.5929E-05	-0.75234	-0.00035754	475.2366382719556	77.648	0.51007	78.391	78.062	78.572	0.74293					13	9	2	0	0	0	0.75466	1	29443	29443		7.9102	3.5809	1	1044500	+		56482	19954	41117	41445	55154	55154					-0.017658714537901687
TVTEKRDW	8	Unmodified	_TVTEKRDW_					0	0	0		tr|U7SWW0|U7SWW0_FUSNU8-oxoguanineDNAglycosylase/APlyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=oggPE=3SV=1	tr|U7SWW0|U7SWW0_FUSNU8-oxoguanineDNAglycosylase/APlyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=oggPE=3SV=1	tr|U7SWW0|U7SWW0_FUSNU8-oxoguanineDNAglycosylase/APlyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=oggPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1664428710938	2	517.766906	1033.51926	-0.80757	-0.00041813	-0.40148	-0.00020787	-1.209	-0.00062601	517.7667628532398	72.748	0.40645	73.483	73.226	73.633	0.73541					11	7	2	0	0	0	0.8957	1	27628	27628		28.487	0	1	1464100			56483	29819	41118	41446	55155	55155					0.0038398192079966975
TVTFHIVE	8	Unmodified	_TVTFHIVE_					0	0	0		nc|ENSG00000007001|O95045-2|UPP2	nc|ENSG00000007001|O95045-2|UPP2	nc|ENSG00000007001|O95045-2|UPP2	MULTI-MSMS	A375_MHC_IP_R1	1	473.6559143066406	2	473.255643	944.496732	-0.39178	-0.00018541	0.37998	0.00017983	-0.011798	-5.5833E-06	473.2558157680587	101.79	0.55591	101.79	101.5	102.05	0					16	10	2	0	0	0	0.70843	1	37390	37390		32.117	0	1	1504400			56484	14450	41119	41447	55156	55156					0.022263825232016643
TVTFHIVE	8	Unmodified	_TVTFHIVE_					0	0	0		nc|ENSG00000007001|O95045-2|UPP2	nc|ENSG00000007001|O95045-2|UPP2	nc|ENSG00000007001|O95045-2|UPP2	MULTI-MATCH	A375_MHC_IP_R2	2		2	473.255643	944.496732	-0.40373	-0.00019107	0.63963	0.00030271	0.2359	0.00011164	473.25594043860355	100.69	0.46233	101.45	101.29	101.75	0.76278	-0.16646	0.00014484	NaN	32.117	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	929360			56485	14450	41119	41447							0.022263825232016643
TVTFHPSIPS	10	Unmodified	_TVTFHPSIPS_					0	0	0			REV__ENSG00000111644|ENST00000229243|ACRBP	REV__ENSG00000111644|ENST00000229243|ACRBP	MULTI-SECPEP	A375_MHC_IP_R1	1	543.6661987304688	2	543.284931	1084.55531	-0.78367	-0.00042576	-2.335	-0.0012686	-3.1186	-0.0016943	543.2822812743361	66.411	1.7827	66.411	65.565	67.348	0					106	34	5	0	0	0	0.56504	1	23992	23992		34.402	5.3201	1	7634300	+		56486	17681	41120	41448	55157	55157					0.016414390976706272
TVTGTGFNPQ	10	Unmodified	_TVTGTGFNPQ_					0	0	0		PKHD1L1|p.I2287Nfs*40|1|0.62|ENSG00000205038|chr8:109454831-109454832|-/A|frameshift_variant;ENSG00000205038|ENST00000378402|PKHD1L1	PKHD1L1|p.I2287Nfs*40|1|0.62|ENSG00000205038|chr8:109454831-109454832|-/A|frameshift_variant	PKHD1L1|p.I2287Nfs*40|1|0.62|ENSG00000205038|chr8:109454831-109454832|-/A|frameshift_variant	MSMS	A375_MHC_IP_R2	2	511.1846923828125	2	511.251089	1020.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.051	1	49.809	49.309	50.309	0.75737								0	0	0	0.1524	1	18426	18426		13.042	0	1				56487	9495	41121	41449	55158	55158					-0.021800108331376578
TVTGVLGSL	9	Unmodified	_TVTGVLGSL_					0	0	0			REV__ENSG00000181333|ENST00000315765|HEPHL1	REV__ENSG00000181333|ENST00000315765|HEPHL1	MULTI-SECPEP	A375_MHC_IP_R2	2	846.3626098632812	1	846.49311	845.485833	-0.61794	-0.00052308	-0.0868	-7.3475E-05	-0.70474	-0.00059656	846.492952679553	88.826	0.55527	89.558	89.331	89.886	0.7318					16	10	2	0	0	0	0.1277	1	33890	33890		54.774	0	1	4300000	+		56488	21645	41122	41450	55159	55159					0.056909801489041456
TVTHWALPSF	10	Unmodified	_TVTHWALPSF_					0	0	0		ENST00000560451.5_1_15:91463023-91463206:+|nuORF	ENST00000560451.5_1_15:91463023-91463206:+|nuORF	ENST00000560451.5_1_15:91463023-91463206:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	580.2008056640625	2	579.800749	1157.58694	-0.10615	-6.1545E-05	0.001178	6.83E-07	-0.10497	-6.0862E-05	579.8006929154334	97.172	0.75754	97.172	96.883	97.641	0					36	14	4	0	0	0	0.9269	1	35668	35668		6.7232	0	1	3826400			56489	13494	41123	41451	55160	55160					0.014454318516072817
TVTIIQFYTCT	11	Unmodified	_TVTIIQFYTCT_					0	0	0			REV__ITIH6|p.R1139C|1|0.44|ENSG00000102313|chrX:54751318-54751318|G/A|missense_variant	REV__ITIH6|p.R1139C|1|0.44|ENSG00000102313|chrX:54751318-54751318|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	645.7261352539062	2	645.325939	1288.63732	-0.87485	-0.00056456	0.69514	0.00044859	-0.1797	-0.00011597	645.326252008108	71.181	0.60802	71.915	71.656	72.264	0.73421					25	11	3	0	0	0	0.72565	1	26996	26996		13.042	0	1	7225500	+		56490	26810	41124	41452	55161	55161					0.004551733944481384
TVTIKSKSRE	10	Unmodified	_TVTIKSKSRE_					0	0	0			REV__ENSG00000116251|ENST00000234875|RPL22	REV__ENSG00000116251|ENST00000234875|RPL22	MULTI-SECPEP	A375_MHC_IP_R2	2	574.718994140625	2	574.83532	1147.65609	-0.26324	-0.00015132	-0.55918	-0.00032143	-0.82241	-0.00047275	574.8349754562078	128.79	1.2124	129.03	128.86	130.07	0.23946					38	23	2	0	0	0	0.93961	1	50778	50778		6.2058	6.2058	1	19431000	+		56491	17950	41125	41453	55162	55162					0.08816471080513111
TVTINTLGV	9	Unmodified	_TVTINTLGV_					0	0	0			REV__ENSG00000141956|ENST00000398548|PRDM15	REV__ENSG00000141956|ENST00000398548|PRDM15	MULTI-MSMS	A375_MHC_IP_R2	2	459.6687316894531	2	459.26875	916.522947	-0.36335	-0.00016687	-0.24759	-0.00011371	-0.61094	-0.00028059	459.26859442045014	103.06	1.9826	103.82	103.38	105.36	0.76428					103	38	5	0	0	0	0.6898	1	39378	39378		7.9102	0	1	88152000	+		56492	19289	41126	41454	55163	55163					0.06134651694674176
TVTIPSGSTL	10	Unmodified	_TVTIPSGSTL_					0	0	0		ENSG00000104518|ENST00000262580|GSDMD;ENST00000524846.5_1_8:144643051-144643375:+|nuORF;ENST00000531184.5_1_8:144641759-144643375:+|nuORF	ENSG00000104518|ENST00000262580|GSDMD	ENSG00000104518|ENST00000262580|GSDMD	MULTI-SECPEP	A375_MHC_IP_R1	1	488.6711120605469	2	488.27149	974.528426	-0.35296	-0.00017234	0.26214	0.000128	-0.090821	-4.4345E-05	488.2713023243946	64.975	0.66014	64.975	64.7	65.36	0					27	12	3	0	0	0	0.38158	1	23512	23512		43.858	0	1	2812100			56493	2517	41127	41455	55164	55164					0.0401433048649551
TVTKLIRGKT	10	Unmodified	_TVTKLIRGKT_					0	0	0			REV__ENST00000411669.1_1_3:195723761-195723926:+|nuORF	REV__ENST00000411669.1_1_3:195723761-195723926:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	372.9172058105469	3	372.908157	1115.70264	0.41418	0.00015445	-0.35367	-0.00013189	0.060515	2.2567E-05	372.9079877448104	32.078	1.0141	32.815	32.555	33.569	0.73691					44	19	4	0	0	0	0.72392	1	11482	11482		1.5923	0.13716	1	33286000	+		56494	24481	41128	41456	55165	55165					0.14941955702488485
TVTKTYGILKE	11	Unmodified	_TVTKTYGILKE_					0	0	0			REV__ENSG00000112486|ENST00000341935|CCR6	REV__ENSG00000112486|ENST00000341935|CCR6	MULTI-MSMS	A375_MHC_IP_R2	2	418.6498107910156	3	418.243094	1251.70745	-0.017008	-7.1136E-06	0.0037307	1.5603E-06	-0.013278	-5.5533E-06	418.243146366889	64.442	2.1852	65.182	64.446	66.631	0.74022					63	42	3	0	0	0	0.72651	1	24462	24462		12.228	1.9124	1	3136900	+		56495	17734	41129	41457	55166	55166					0.0916679505457978
TVTKVETYAKL	11	Unmodified	_TVTKVETYAKL_					0	0	0			REV__ENSG00000137124|ENST00000377698|ALDH1B1	REV__ENSG00000137124|ENST00000377698|ALDH1B1	MULTI-MSMS	A375_MHC_IP_R1	1	418.6500244140625	3	418.243094	1251.70745	0.050973	2.1319E-05	0.38868	0.00016256	0.43965	0.00018388	418.2432478533747	65.386	1.4734	65.386	64.954	66.428	0					47	28	2	0	0	0	0.70017	1	23692	23692		15.538	2.6658	1	2646800	+		56496	18987	41130	41458	55167	55167					0.09166795054557042
TVTLISNDL	9	Unmodified	_TVTLISNDL_					0	0	0			REV__ENSG00000141956|ENST00000398548|PRDM15	REV__ENSG00000141956|ENST00000398548|PRDM15	MSMS	A375_MHC_IP_R2	2	488.19061279296875	2	488.27149	974.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.03	1	111.77	111.27	112.27	0.73692								0	0	0	0.13673	1	41872	41872		30.637	4.2953	1		+		56497	19289	41131	41459	55168	55168					0.040143304864727725
TVTLMNADNQ	10	Unmodified	_TVTLMNADNQ_					0	0	0		ENST00000286692.8_1_1:111660637-111660676:-|nuORF	ENST00000286692.8_1_1:111660637-111660676:-|nuORF	ENST00000286692.8_1_1:111660637-111660676:-|nuORF	MSMS	A375_MHC_IP_R2	2	553.6529541015625	2	553.760963	1105.50737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.298	1	51.052	50.552	51.552	0.75406								0	0	0	0.1524	1	18915	18915		13.042	1.4022	1				56498	10451	41132	41460	55169	55169					-0.04116002884711634
TVTLSLGPVLH	11	Unmodified	_TVTLSLGPVLH_					0	0	0			REV__nc|ENSG00000163075|Q4G0U5-4|CFAP221	REV__nc|ENSG00000163075|Q4G0U5-4|CFAP221	MULTI-MSMS	A375_MHC_IP_R2	2	379.9485168457031	3	379.560646	1135.66011	0.086828	3.2957E-05	0.03992	1.5152E-05	0.12675	4.8109E-05	379.5606259582974	45.863	1.2647	46.628	46.252	47.517	0.76519					71	24	5	0	0	0	0.71717	1	17067	17067		14.218	0	1	106680000	+		56499	20336	41133	41461	55170	55170					0.09770560574247611
TVTLTPPSLR	10	Unmodified	_TVTLTPPSLR_					0	0	0			REV__ENST00000424043.3_1_1:92580458-92580773:-|nuORF	REV__ENST00000424043.3_1_1:92580458-92580773:-|nuORF	MSMS	A375_MHC_IP_R1	1	542.7160034179688	2	542.821681	1083.62881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.232	1	92.232	91.732	92.732	0								0	0	0	0.15089	1	33893	33893		16.149	0.90062	1		+		56500	24621	41134	41462	55171	55171					0.09033987540124144
TVTPWNSCH	9	Unmodified	_TVTPWNSCH_					0	0	0		SLAMF8|p.D218N|1|0.19|ENSG00000158714|chr1:159833160-159833160|G/A|missense_variant	SLAMF8|p.D218N|1|0.19|ENSG00000158714|chr1:159833160-159833160|G/A|missense_variant	SLAMF8|p.D218N|1|0.19|ENSG00000158714|chr1:159833160-159833160|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	523.6907958984375	2	522.732009	1043.44946	-0.55869	-0.00029204	0.37984	0.00019856	-0.17884	-9.3488E-05	522.7321596178696	36.994	1.2717	36.994	36.489	37.761	0					35	24	3	0	0	0	0.6656	1	12403	12403		10.074	1.4806	1	4545300			56501	29162	41135	41463	55172	55172					-0.0705222001945458
TVTQIQIL	8	Unmodified	_TVTQIQIL_					0	0	0		nc|ENSG00000135164|Q9Y222-5|DMTF1;ENSG00000135164|ENST00000331242|DMTF1;nc|ENSG00000135164|Q9Y222-4|DMTF1;nc|ENSG00000135164|Q9Y222-2|DMTF1;nc|ENSG00000135164|Q9Y222-3|DMTF1	nc|ENSG00000135164|Q9Y222-5|DMTF1	nc|ENSG00000135164|Q9Y222-5|DMTF1	MULTI-MSMS	A375_MHC_IP_R1	1	458.67889404296875	2	458.279118	914.543683	-0.21464	-9.8365E-05	0.36288	0.0001663	0.14825	6.7938E-05	458.27919803233544	103.9	0.66153	103.9	103.63	104.29	0					24	12	2	0	0	0	0.69583	1	38148	38148		36.044	0	1	4638400			56502	4654	41136	41464	55173	55173					0.08299242074338053
TVTQQGFAWN	10	Unmodified	_TVTQQGFAWN_					0	0	0			REV__ENSG00000249715|ENST00000624922|FER1L5	REV__ENSG00000249715|ENST00000624922|FER1L5	MULTI-MSMS	A375_MHC_IP_R1	1	577.7080688476562	2	576.277638	1150.54072	-0.1557	-8.9724E-05	1.9919	0.0011479	1.8362	0.0010582	576.7808471207695	55.411	0.91531	55.411	55.075	55.991	0					51	17	4	0	0	0	0.66308	1	19767	19767		16.149	0.30192	1	10856000	+		56503	22838	41137	41465	55174	55174					-0.02852633050474651
TVTRLDVKV	9	Unmodified	_TVTRLDVKV_					0	0	0			REV__nc|ENSG00000133115|Q8TAV4-2|STOML3	REV__nc|ENSG00000133115|Q8TAV4-2|STOML3	MULTI-SECPEP	A375_MHC_IP_R1	1	516.19287109375	2	515.816399	1029.61824	-0.67107	-0.00034615	-0.18848	-9.7222E-05	-0.85955	-0.00044337	515.8167023021355	27.659	0.25245	27.659	27.533	27.786	0					6	4	2	0	0	0	0.79535	1	8394	8394		1.3295	0	1	737970	+		56504	18706	41138	41466	55175	55175					0.10462004885698661
TVTRYPANS	9	Unmodified	_TVTRYPANS_					0	0	0		ENST00000474291.1_1_7:97911152-97911766:+|nuORF;ENST00000473967.1_1_7:97911152-97912144:+|nuORF;nc|ENSG00000164713|O95415-2|BRI3;ENST00000456357.6_1_7:97881701-97920552:+|nuORF;ENSG00000164713|ENST00000297290|BRI3	ENST00000474291.1_1_7:97911152-97911766:+|nuORF	ENST00000474291.1_1_7:97911152-97911766:+|nuORF	MSMS	A375_MHC_IP_R2	2	504.6750183105469	2	504.759081	1007.50361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.941	1	42.716	42.216	43.216	0.77451								0	0	0	0.15486	1	15587	15587		10.074	1.3285	1				56505	6870	41139	41467	55176	55176					0.00015695403760673798
TVTSGDLDLF	10	Unmodified	_TVTSGDLDLF_					0	0	0		nc|ENSG00000112305|Q8IYB5-3|SMAP1;nc|ENSG00000112305|Q8IYB5-2|SMAP1;ENSG00000112305|ENST00000370455|SMAP1	nc|ENSG00000112305|Q8IYB5-3|SMAP1	nc|ENSG00000112305|Q8IYB5-3|SMAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	533.7032470703125	2	534.266404	1066.51826	-0.60165	-0.00032144	-0.037386	-1.9974E-05	-0.63903	-0.00034141	534.2663744372835	57.084	0.91731	57.084	56.498	57.415	0					28	17	2	0	0	0	0.72086	1	20480	20480		8.7454	0	1	3668800			56506	3074	41140	41468	55177	55177					-0.012342772387455625
TVTSPLSLSP	10	Unmodified	_TVTSPLSLSP_					0	0	0			REV__nc|ENSG00000091656|Q86UP3|ZFHX4	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-MSMS	A375_MHC_IP_R2	2	502.681640625	2	501.279315	1000.54408	-0.89646	-0.00044938	0.15041	7.5396E-05	-0.74605	-0.00037398	501.27924947244975	61.67	1.7679	62.415	61.919	63.687	0.74503					86	34	4	0	0	0	0.55789	1	23294	23294		24.021	0	1	10632000	+		56507	16955	41141	41469	55178	55178					0.04382617003534506
TVTTAIAKA	9	Unmodified	_TVTTAIAKA_					0	0	0			REV__ENST00000447566.5_1_22:41166840-41215302:-|nuORF	REV__ENST00000447566.5_1_22:41166840-41215302:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	438.5434265136719	2	438.263468	874.512382	-0.48807	-0.0002139	1.5309	0.00067094	1.0428	0.00045704	438.2640863834628	142.71	0.1523	142.71	142.64	142.79	0					4	2	2	0	0	0	0.72985	1	54740	54740		4.3292	1.7518	1	1269500	+		56508	17085	41142	41470	55179	55179					0.07010669040221273
TVTTAIAKA	9	Unmodified	_TVTTAIAKA_					0	0	0			REV__ENST00000447566.5_1_22:41166840-41215302:-|nuORF	REV__ENST00000447566.5_1_22:41166840-41215302:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	438.263468	874.512382	-0.48807	-0.0002139	1.5309	0.00067094	1.0428	0.00045704	438.2640863834628	142.71	0.1523	142.71	142.64	142.79	0	-0.049371	6.291E-05	NaN	4.3292	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1269500	+		56509	17085	41142	41470							0.07010669040221273
TVTTPLREV	9	Unmodified	_TVTTPLREV_					0	0	0		nc|ENSG00000186638|Q5T7B8-4|KIF24;nc|ENSG00000186638|Q5T7B8-2|KIF24;ENSG00000186638|ENST00000402558|KIF24	nc|ENSG00000186638|Q5T7B8-4|KIF24	nc|ENSG00000186638|Q5T7B8-4|KIF24	MULTI-SECPEP	A375_MHC_IP_R1	1	507.9804992675781	2	508.292756	1014.57096	-0.38114	-0.00019373	0.18731	9.521E-05	-0.19383	-9.8521E-05	508.2929277852666	33.484	0.45688	33.484	33.291	33.748	0					16	8	2	0	0	0	0.75164	1	11031	11031		9.3831	0	1	2331400			56510	8767	41143	41471	55180	55180					0.06425725614724342
TVTTQFFAPN	10	Unmodified	_TVTTQFFAPN_					0	0	0			REV__ENST00000586932.5_1_19:39109833-39116793:+|nuORF	REV__ENST00000586932.5_1_19:39109833-39116793:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	562.6665649414062	2	563.282389	1124.55022	-0.56934	-0.0003207	0.000763	4.2979E-07	-0.56858	-0.00032027	563.2821228995156	25.654	0.40641	25.654	25.46	25.866	0					9	7	2	0	0	0	0.93194	1	7452	7452		5.7319	0	1	1043200	+		56511	21532	41144	41472	55181	55181					-0.007068647649475679
TVTTVILEV	9	Unmodified	_TVTTVILEV_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	A375_MHC_IP_R1	1	974.9766845703125	1	974.576839	973.569563	0.28899	0.00028164	0.081699	7.9622E-05	0.37069	0.00036126	974.576907032233	111.18	1.2253	111.18	110.85	112.08	0					43	23	2	0	0	0	0.026268	1	40956	40956		78.149	16.792	1	12613000			56512	3576	41145	41473	55182	55182					0.08172091525955238
TVTTVILEV	9	Unmodified	_TVTTVILEV_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	A375_MHC_IP_R2	2	974.8973388671875	1	974.576839	973.569563	0.12392	0.00012077	0.26974	0.00026288	0.39366	0.00038365	974.5770934036058	110.34	1.5331	111.08	110.58	112.11	0.73692					42	29	2	0	0	0	0.35581	1	41988	41988		26.884	5.137	1	8668000			56513	3576	41145	41473	55183	55183					0.08172091525955238
TVTTVTYSL	9	Unmodified	_TVTTVTYSL_					0	0	0			REV__nc|ENSG00000146083|Q7L0R7-2|RNF44	REV__nc|ENSG00000146083|Q7L0R7-2|RNF44	MSMS	A375_MHC_IP_R2	2	492.6791687011719	2	492.76604	983.517527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.506	1	43.278	42.778	43.778	0.7724								0	0	0	0.1535	1	15813	15813		15.847	0	1		+		56514	19516	41146	41474	55184	55184					0.025109281121785898
TVTVLKLLM	9	Unmodified	_TVTVLKLLM_					0	0	0		OR10G8|p.P77L|1|0.29|ENSG00000234560|chr11:124029852-124029852|C/T|missense_variant	OR10G8|p.P77L|1|0.29|ENSG00000234560|chr11:124029852-124029852|C/T|missense_variant	OR10G8|p.P77L|1|0.29|ENSG00000234560|chr11:124029852-124029852|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	509.72259521484375	2	509.322471	1016.63039	-0.13294	-6.7711E-05	0.51607	0.00026284	0.38312	0.00019513	509.32261130060135	116.54	0.50739	116.54	116.34	116.85	0					20	9	3	0	0	0	0.059859	1	42745	42745		71.922	21.067	1	8888400			56515	15058	41147	41475	55185	55185					0.12273905304550681
TVTVLKLLM	9	Unmodified	_TVTVLKLLM_					0	0	0		OR10G8|p.P77L|1|0.29|ENSG00000234560|chr11:124029852-124029852|C/T|missense_variant	OR10G8|p.P77L|1|0.29|ENSG00000234560|chr11:124029852-124029852|C/T|missense_variant	OR10G8|p.P77L|1|0.29|ENSG00000234560|chr11:124029852-124029852|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	509.7212219238281	2	509.322471	1016.63039	-0.56328	-0.00028689	-0.14869	-7.573E-05	-0.71197	-0.00036262	509.3223125569055	115.43	0.6573	116.12	115.83	116.49	0.68999					28	12	3	0	0	0	0.14422	1	43491	43491		43.858	0	1	8124500			56516	15058	41147	41475	55186	55186					0.12273905304550681
TVTVLKLLM	9	Oxidation (M)	_TVTVLKLLM(Oxidation (M))_		TVTVLKLLM(1)		TVTVLKLLM(68)	0	0	1		OR10G8|p.P77L|1|0.29|ENSG00000234560|chr11:124029852-124029852|C/T|missense_variant	OR10G8|p.P77L|1|0.29|ENSG00000234560|chr11:124029852-124029852|C/T|missense_variant	OR10G8|p.P77L|1|0.29|ENSG00000234560|chr11:124029852-124029852|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	517.7200927734375	2	517.319928	1032.6253	-0.35259	-0.0001824	-0.047507	-2.4576E-05	-0.40009	-0.00020698	517.3199430356008	92.289	0.81318	92.289	92.007	92.821	0					35	15	4	0	0	0	0.064992	1	33884	33884		68.081	22.06	1	12738000			56517	15058	41147	41476	55187	55187		471			0.1102960144194185
TVTVVGGLGV	10	Unmodified	_TVTVVGGLGV_					0	0	0		nc|ENSG00000157593|Q8TB61-5|SLC35B2;nc|ENSG00000157593|Q8TB61-4|SLC35B2;nc|ENSG00000157593|Q8TB61-3|SLC35B2;nc|ENSG00000157593|Q8TB61-2|SLC35B2;ENSG00000157593|ENST00000393812|SLC35B2	nc|ENSG00000157593|Q8TB61-5|SLC35B2	nc|ENSG00000157593|Q8TB61-5|SLC35B2	MULTI-MSMS	A375_MHC_IP_R2	2	451.6711730957031	2	451.271293	900.528032	-0.1661	-7.4956E-05	-0.024139	-1.0893E-05	-0.19024	-8.585E-05	451.27125241790736	68.511	0.65781	69.247	68.968	69.626	0.73511					21	12	2	0	0	0	0.23156	1	25988	25988		46.021	0	1	2518000			56518	6253	41148	41477	55188	55188					0.07378955557294375
TVTVVGGLGV	10	Unmodified	_TVTVVGGLGV_					0	0	0		nc|ENSG00000157593|Q8TB61-5|SLC35B2;nc|ENSG00000157593|Q8TB61-4|SLC35B2;nc|ENSG00000157593|Q8TB61-3|SLC35B2;nc|ENSG00000157593|Q8TB61-2|SLC35B2;ENSG00000157593|ENST00000393812|SLC35B2	nc|ENSG00000157593|Q8TB61-5|SLC35B2	nc|ENSG00000157593|Q8TB61-5|SLC35B2	MULTI-MATCH	A375_MHC_IP_R1	1		2	451.271293	900.528032	0.35905	0.00016203	-0.31944	-0.00014415	0.039609	1.7874E-05	451.2712050735408	69.432	0.55915	69.432	69.173	69.732	0	0.092665	-0.00010092	NaN	46.021	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1386400			56519	6253	41148	41477							0.07378955557294375
TVTYFCDV	8	Unmodified	_TVTYFCDV_					0	0	0			REV__nc|ENSG00000034152|P46734-2|MAP2K3	REV__nc|ENSG00000034152|P46734-2|MAP2K3	MSMS	A375_MHC_IP_R1	1	474.1640625	2	474.212586	946.410619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.424	1	46.424	45.924	46.924	0								0	0	0	0.16876	1	16288	16288		14.582	0.67564	1		+		56520	16310	41149	41478	55189	55189					-0.06472945373832317
TVVAAKTKLY	10	Unmodified	_TVVAAKTKLY_					0	0	0			REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	547.1369018554688	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.99	1	130.2	129.7	130.7	0.2142								0	0	0	0.15531	1	51091	51091		6.7232	1.9672	1		+		56521	15465	41150	41479	55190	55190					0.11167462062553568
TVVAVRAG	8	Unmodified	_TVVAVRAG_					0	0	0			REV__ENSG00000163359|ENST00000295550|COL6A3	REV__ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	A375_MHC_IP_R2	2	772.8678588867188	1	772.467564	771.460287	-0.74807	-0.00057786	1.1738	0.00090669	0.42569	0.00032883	772.4684498794223	144.97	0.14903	144.99	144.89	145.04	0.021408					5	3	2	0	0	0	0.77797	1	56621	56621		2.3027	0	1	1214000	+		56522	20352	41151	41480	55191	55191					0.06541550417136932
TVVAVRAG	8	Unmodified	_TVVAVRAG_					0	0	0			REV__ENSG00000163359|ENST00000295550|COL6A3	REV__ENSG00000163359|ENST00000295550|COL6A3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	772.467564	771.460287	-0.82793	-0.00063955	1.737	0.0013418	0.9091	0.00070225	772.468797104912	144.94	0.19905	144.94	144.82	145.02	0	-0.0216	0.00022036	NaN	2.3027	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1410700	+		56523	20352	41151	41480							0.06541550417136932
TVVDAGAV	8	Unmodified	_TVVDAGAV_					0	0	0		nc|ENSG00000077327|O75602-2|SPAG6;nc|ENSG00000077327|O75602-5|SPAG6;ENSG00000077327|ENST00000376624|SPAG6;nc|ENSG00000077327|O75602-3|SPAG6	nc|ENSG00000077327|O75602-2|SPAG6	nc|ENSG00000077327|O75602-2|SPAG6	MULTI-SECPEP	A375_MHC_IP_R1	1	732.0070190429688	1	731.393396	730.386119	-0.5631	-0.00041184	0.11747	8.5916E-05	-0.44563	-0.00032593	731.3934019557848	99.549	0.80864	99.549	99.218	100.03	0					24	15	2	0	0	0	0.38164	1	36587	36587		46.921	2.5139	1	4917300			56524	1653	41152	41481	55192	55192					0.010141625349433525
TVVDAGAV	8	Unmodified	_TVVDAGAV_					0	0	0		nc|ENSG00000077327|O75602-2|SPAG6;nc|ENSG00000077327|O75602-5|SPAG6;ENSG00000077327|ENST00000376624|SPAG6;nc|ENSG00000077327|O75602-3|SPAG6	nc|ENSG00000077327|O75602-2|SPAG6	nc|ENSG00000077327|O75602-2|SPAG6	MULTI-MATCH	A375_MHC_IP_R2	2		1	731.393396	730.386119	-0.6987	-0.00051102	0.29791	0.00021789	-0.40079	-0.00029313	731.3934484402901	98.883	0.86467	99.643	99.301	100.17	0.75977	0.046756	8.7457E-05	NaN	46.921	27	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7075000			56525	1653	41152	41481							0.010141625349433525
TVVDLLRW	8	Unmodified	_TVVDLLRW_					0	0	0			REV__ENSG00000161509|ENST00000293190|GRIN2C	REV__ENSG00000161509|ENST00000293190|GRIN2C	MULTI-SECPEP	A375_MHC_IP_R2	2	501.6939697265625	2	501.292559	1000.57057	-0.53853	-0.00026996	0.53227	0.00026682	-0.0062672	-3.1417E-06	501.29317481259596	70.108	1.118	70.842	70.335	71.453	0.73421					36	21	3	0	0	0	0.91495	1	26536	26536		24.674	0	1	2708500	+		56526	20208	41153	41482	55193	55193					0.07030350685511166
TVVDSIMTAL	10	Unmodified	_TVVDSIMTAL_					0	0	0		ENSG00000003756|ENST00000347869|RBM5;RBM5|p.R574Efs*14|1|0.15|ENSG00000003756|chr3:50114049-50114050|-/G|frameshift_variant	ENSG00000003756|ENST00000347869|RBM5	ENSG00000003756|ENST00000347869|RBM5	MULTI-MSMS	A375_MHC_IP_R1	1	525.2095947265625	2	525.281	1048.54745	-0.25416	-0.00013351	-1.5871	-0.00083369	-1.8413	-0.0009672	525.2803219498569	126.18	0.9057	126.18	125.65	126.56	0					23	17	3	0	0	0	0.17045	1	48292	48292		52.268	6.2474	1	18901000			56527	861	41154	41483	55194	55194					0.025115437858630685
TVVDYKEVL	9	Unmodified	_TVVDYKEVL_					0	0	0		ENSG00000162063|ENST00000397066|CCNF;CCNF|p.P408S|1|0.39|ENSG00000162063|chr16:2449285-2449285|C/T|missense_variant	ENSG00000162063|ENST00000397066|CCNF	ENSG00000162063|ENST00000397066|CCNF	MULTI-SECPEP	A375_MHC_IP_R1	1	532.6742553710938	2	533.294965	1064.57538	-0.14141	-7.5416E-05	-0.93511	-0.00049869	-1.0765	-0.0005741	533.7959119184114	69.508	0.50878	69.508	69.173	69.681	0					17	9	2	0	0	0	0.67483	1	25127	25127		10.074	0	1	680340			56528	6505	41155	41484	55195	55195					0.04567190037596447
TVVERLVKV	9	Unmodified	_TVVERLVKV_					0	0	0		ENST00000562408.1_1_16:28128533-28137161:-|nuORF;nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6	ENST00000562408.1_1_16:28128533-28137161:-|nuORF	ENST00000562408.1_1_16:28128533-28137161:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	522.2339477539062	2	521.834591	1041.65463	-0.1926	-0.00010051	-0.68061	-0.00035516	-0.87321	-0.00045567	521.8341828687577	48.197	0.40567	48.197	48.02	48.426	0					11	7	2	0	0	0	0.35628	1	17001	17001		40.725	18.067	1	3082800			56529	7387	41156	41485	55196	55196					0.13546881782394848
TVVERLVKV	9	Unmodified	_TVVERLVKV_					0	0	0		ENST00000562408.1_1_16:28128533-28137161:-|nuORF;nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6	ENST00000562408.1_1_16:28128533-28137161:-|nuORF	ENST00000562408.1_1_16:28128533-28137161:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	521.7255859375	2	521.834591	1041.65463	-0.4139	-0.00021599	0.24078	0.00012565	-0.17311	-9.0337E-05	522.3364188838	47.269	0.35688	48.03	47.817	48.174	0.76128					15	6	3	0	0	0	0.55534	1	17729	17729		26.021	6.6588	1	3073200			56530	7387	41156	41485	55197	55197					0.13546881782394848
TVVGAVLGTS	10	Unmodified	_TVVGAVLGTS_					0	0	0		tr|U7SSZ7|U7SSZ7_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01653PE=3SV=1	tr|U7SSZ7|U7SSZ7_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01653PE=3SV=1	tr|U7SSZ7|U7SSZ7_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01653PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	452.6610107421875	2	452.260925	902.507297	-0.32572	-0.00014731	0.24492	0.00011077	-0.080795	-3.6541E-05	452.26097758424345	46.725	0.66258	46.725	46.444	47.107	0					19	12	2	0	0	0	0.19329	1	16419	16419		49.933	9.6938	1	4578300			56531	29655	41157	41486	55198	55198					0.05214365177630498
TVVGAVLGTS	10	Unmodified	_TVVGAVLGTS_					0	0	0		tr|U7SSZ7|U7SSZ7_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01653PE=3SV=1	tr|U7SSZ7|U7SSZ7_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01653PE=3SV=1	tr|U7SSZ7|U7SSZ7_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01653PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	452.66094970703125	2	452.260925	902.507297	-0.23632	-0.00010688	0.13278	6.0052E-05	-0.10354	-4.6825E-05	452.26091758110925	45.827	0.55304	46.592	46.252	46.805	0.76519					18	10	2	0	0	0	0.19329	1	17144	17144		49.933	9.6938	1	2991600			56532	29655	41157	41486	55199	55199					0.05214365177630498
TVVGFHRALP	10	Unmodified	_TVVGFHRALP_					0	0	0			REV__SLC34A3|p.M512Hfs*81|1|0.67|ENSG00000198569|chr9:137236143-137236144|-/G|frameshift_variant	REV__SLC34A3|p.M512Hfs*81|1|0.67|ENSG00000198569|chr9:137236143-137236144|-/G|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	366.6134948730469	3	366.213581	1095.61891	0.0055413	2.0293E-06	-0.011083	-4.0589E-06	-0.0055421	-2.0296E-06	366.2134135707656	55.497	0.5581	56.247	56.084	56.642	0.75075					13	10	2	0	0	0	0.85074	1	20970	20970		18.721	18.721	1	1622900	+		56533	22383	41158	41487	55200	55200					0.07492844325406622
TVVGFHRALP	10	Unmodified	_TVVGFHRALP_					0	0	0			REV__SLC34A3|p.M512Hfs*81|1|0.67|ENSG00000198569|chr9:137236143-137236144|-/G|frameshift_variant	REV__SLC34A3|p.M512Hfs*81|1|0.67|ENSG00000198569|chr9:137236143-137236144|-/G|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R1	1		3	366.213581	1095.61891	0.34314	0.00012566	-0.44768	-0.00016395	-0.10454	-3.8285E-05	366.2132418089994	56.473	0.6613	56.473	56.397	57.059	0	0.11268	-0.00035774	NaN	18.721	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1222200	+		56534	22383	41158	41487							0.07492844325406622
TVVGNPRSW	9	Unmodified	_TVVGNPRSW_					0	0	0		ENSG00000100926|ENST00000261789|TM9SF1;nc|ENSG00000100926|O15321-2|TM9SF1	ENSG00000100926|ENST00000261789|TM9SF1	ENSG00000100926|ENST00000261789|TM9SF1	MULTI-SECPEP	A375_MHC_IP_R1	1	508.6457214355469	2	508.269616	1014.52468	-0.29713	-0.00015102	-0.49769	-0.00025296	-0.79483	-0.00040399	508.26926354218386	42.361	0.80798	42.361	41.982	42.79	0					27	15	2	0	0	0	0.30925	1	14628	14628		34.932	17.819	1	12952000			56535	2233	41159	41488	55201	55201					0.017997055032651588
TVVGNPRSW	9	Unmodified	_TVVGNPRSW_					0	0	0		ENSG00000100926|ENST00000261789|TM9SF1;nc|ENSG00000100926|O15321-2|TM9SF1	ENSG00000100926|ENST00000261789|TM9SF1	ENSG00000100926|ENST00000261789|TM9SF1	MULTI-SECPEP	A375_MHC_IP_R2	2	508.6689758300781	2	508.269616	1014.52468	-0.84042	-0.00042716	-0.17174	-8.7288E-05	-1.0122	-0.00051445	508.26945650454036	41.5	0.81346	42.274	41.946	42.759	0.77451					28	15	2	0	0	0	0.30925	1	15404	15404		34.932	17.99	1	14619000			56536	2233	41159	41488	55202	55202					0.017997055032651588
TVVGPGDVLY	10	Unmodified	_TVVGPGDVLY_					0	0	0		ENSG00000166135|ENST00000299163|HIF1AN	ENSG00000166135|ENST00000299163|HIF1AN	ENSG00000166135|ENST00000299163|HIF1AN	MULTI-MSMS	A375_MHC_IP_R2	2	510.673583984375	2	510.274032	1018.53351	-0.73718	-0.00037616	-0.24506	-0.00012505	-0.98224	-0.00050121	510.2738175869895	76.061	1.7245	76.801	76.181	77.905	0.74052					63	33	3	0	0	0	0.62155	1	28815	28815		19.257	0	1	5134400			56537	7025	41160	41489	55203	55203					0.024986343490809304
TVVHFLHLPM	10	Unmodified	_TVVHFLHLPM_					0	0	0			REV__NPY5R|p.D392N|1|0.38|ENSG00000164129|chr4:163351447-163351447|G/A|missense_variant	REV__NPY5R|p.D392N|1|0.38|ENSG00000164129|chr4:163351447-163351447|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	398.95458984375	3	398.554838	1192.64269	0.24262	9.6696E-05	-0.43143	-0.00017195	-0.18881	-7.525E-05	398.5546536265103	49.276	0.96457	49.276	48.983	49.947	0					31	18	2	0	0	0	0.71118	1	17454	17454		3.8763	0	1	1556600	+		56538	27626	41161	41490	55204	55204					0.05406941767569151
TVVIAPSQ	8	Unmodified	_TVVIAPSQ_					0	0	0			REV__nc|ENSG00000183317|Q5JZY3-3|EPHA10	REV__nc|ENSG00000183317|Q5JZY3-3|EPHA10	MULTI-SECPEP	A375_MHC_IP_R2	2	814.8655395507812	1	814.466895	813.459619	-0.67945	-0.00055339	-0.23354	-0.00019021	-0.91299	-0.0007436	814.4664849522087	85.97	0.45815	86.703	86.438	86.896	0.733					11	8	2	0	0	0	0.8211	1	32751	32751		30.225	15.387	1	2010300	+		56539	21749	41162	41491	55205	55205					0.04542710977432307
TVVIAPSQ	8	Unmodified	_TVVIAPSQ_					0	0	0			REV__nc|ENSG00000183317|Q5JZY3-3|EPHA10	REV__nc|ENSG00000183317|Q5JZY3-3|EPHA10	MULTI-MATCH	A375_MHC_IP_R1	1		1	814.466895	813.459619	-0.53581	-0.0004364	0.07961	6.484E-05	-0.4562	-0.00037156	814.467033867673	86.806	0.4046	86.806	86.629	87.034	0	0.051569	0.00013465	NaN	30.225	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2142200	+		56540	21749	41162	41491							0.04542710977432307
TVVIHGTSGP	10	Unmodified	_TVVIHGTSGP_					0	0	0			REV__nc|ENSG00000064393|Q9H2X6-2|HIPK2	REV__nc|ENSG00000064393|Q9H2X6-2|HIPK2	MULTI-SECPEP	A375_MHC_IP_R1	1	484.6639709472656	2	484.263999	966.513445	0.12455	6.0315E-05	-0.24742	-0.00011982	-0.12287	-5.9504E-05	484.26381311412706	44.537	0.71262	44.537	44.267	44.98	0					30	13	3	0	0	0	0.48072	1	15529	15529		37.974	0	1	11919000	+		56541	16477	41163	41492	55206	55206					0.02884883409149097
TVVIHGTSGP	10	Unmodified	_TVVIHGTSGP_					0	0	0			REV__nc|ENSG00000064393|Q9H2X6-2|HIPK2	REV__nc|ENSG00000064393|Q9H2X6-2|HIPK2	MULTI-SECPEP	A375_MHC_IP_R2	2	484.66363525390625	2	484.263999	966.513445	-0.39125	-0.00018947	0.1727	8.3631E-05	-0.21855	-0.00010584	484.2638938797752	43.865	0.80769	44.634	44.278	45.086	0.7691					34	15	3	0	0	0	0.38158	1	16329	16329		52.268	3.9225	1	14104000	+		56542	16477	41163	41492	55207	55207					0.02884883409149097
TVVILTHLY	9	Unmodified	_TVVILTHLY_					0	0	0			REV__CALCRL|p.A244T|1|0.52|ENSG00000064989|chr2:187360649-187360649|C/T|missense_variant	REV__CALCRL|p.A244T|1|0.52|ENSG00000064989|chr2:187360649-187360649|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	530.2030639648438	2	529.815867	1057.61718	-0.82103	-0.000435	0.18198	9.6416E-05	-0.63905	-0.00033858	529.8158904005716	90.854	0.66035	90.854	90.539	91.199	0					25	12	3	0	0	0	0.52144	1	33503	33503		30.225	8.4782	1	4323900	+		56543	15566	41164	41493	55208	55208					0.09067790516814966
TVVKASLVKGY	11	Unmodified	_TVVKASLVKGY_					0	0	0			REV__ENSG00000137776|ENST00000380516|SLTM	REV__ENSG00000137776|ENST00000380516|SLTM	MULTI-SECPEP	A375_MHC_IP_R2	2	388.2583923339844	3	388.904413	1163.69141	-0.38683	-0.00015044	0.45584	0.00017728	0.06901	2.6838E-05	388.9045152292691	26.879	0.40973	27.539	27.313	27.722	0.65992					10	7	2	0	0	0	0.99676	1	9081	9081		1.2148	0	1	820890	+		56544	19032	41165	41494	55209	55209					0.1161113360831223
TVVLLVCVKK	10	Unmodified	_TVVLLVCVKK_					0	0	0			REV__ENSG00000176230|ENST00000641386|OR4K17	REV__ENSG00000176230|ENST00000641386|OR4K17	MSMS	A375_MHC_IP_R2	2	367.7572937011719	3	367.906989	1100.69914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.039	1	18.642	18.142	19.142	0.60308								0	0	0	0.15637	1	5343	5343		0.15932	0	1		+		56545	21397	41166	41495	55210	55210					0.152815696042353
TVVLLVCVKK	10	Unmodified	_TVVLLVCVKK_					0	0	0			REV__ENSG00000176230|ENST00000641386|OR4K17	REV__ENSG00000176230|ENST00000641386|OR4K17	MSMS	A375_MHC_IP_R2	2	367.79364013671875	3	367.906989	1100.69914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.176	1	18.779	18.279	19.279	0.60308								0	0	0	0.15637	1	5393	5393		0.15932	0	1		+		56546	21397	41166	41495	55211	55211					0.152815696042353
TVVNADQILV	10	Unmodified	_TVVNADQILV_					0	0	0		nc|ENSG00000115657|Q9NP58-4|ABCB6;ENSG00000115657|ENST00000265316|ABCB6;ENST00000487380.5_1_2:220074662-220075642:-|nuORF	nc|ENSG00000115657|Q9NP58-4|ABCB6	nc|ENSG00000115657|Q9NP58-4|ABCB6	MULTI-SECPEP	A375_MHC_IP_R1	1	536.6714477539062	2	536.305864	1070.59717	-0.63764	-0.00034197	0.72449	0.00038855	0.086854	4.6581E-05	536.8081382443385	51.143	0.50794	51.143	50.814	51.322	0					11	9	2	0	0	0	0.88918	1	18131	18131		8.7454	0	1	1017600			56547	3329	41167	41496	55212	55212					0.06469994786175448
TVVNWIPAD	9	Unmodified	_TVVNWIPAD_					0	0	0			REV__tr|U7T5A8|U7T5A8_FUSNUGlyceroluptakefacilitatorproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00505PE=3SV=1	REV__tr|U7T5A8|U7T5A8_FUSNUGlyceroluptakefacilitatorproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00505PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	508.2027282714844	2	507.766374	1013.5182	-0.3284	-0.00016675	-2.9288	-0.0014871	-3.2572	-0.0016539	508.2666851481295	97.769	0.50636	97.769	97.338	97.845	0					13	9	2	0	0	0	0.41409	1	35832	35832		24.021	3.606	1	707670	+		56548	28822	41168	41497	55213	55213					0.011977675518892283
TVVPLPSASP	10	Unmodified	_TVVPLPSASP_					0	0	0			REV__ENSG00000127311|ENST00000247815|HELB	REV__ENSG00000127311|ENST00000247815|HELB	MULTI-MSMS	A375_MHC_IP_R2	2	484.67626953125	2	484.276575	966.538597	-0.42442	-0.00020554	0.063076	3.0546E-05	-0.36135	-0.00017499	484.2765707979459	46.711	0.91819	47.472	47.104	48.022	0.76128					33	17	3	0	0	0	0.48529	1	17467	17467		29.082	0	1	12716000	+		56549	18414	41169	41498	55214	55214					0.053989382117038076
TVVQFKSLVN	10	Unmodified	_TVVQFKSLVN_					0	0	0		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MULTI-MSMS	A375_MHC_IP_R1	1	379.2890930175781	3	378.888763	1133.64446	0.75212	0.00028497	-0.77966	-0.0002954	-0.027542	-1.0435E-05	378.8884472881353	48.595	0.55647	48.595	48.325	48.882	0					24	10	3	0	0	0	0.61179	1	17147	17147		19.987	1.2657	1	3950800			56550	7896	41170	41499	55215	55215					0.08298274057187882
TVVQFLGKVV	10	Unmodified	_TVVQFLGKVV_					0	0	0		ENST00000588547.1_1_17:40060903-40061877:-|nuORF	ENST00000588547.1_1_17:40060903-40061877:-|nuORF	ENST00000588547.1_1_17:40060903-40061877:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	364.29345703125	3	363.893737	1088.65938	-0.22031	-8.0169E-05	-1.064	-0.00038717	-1.2843	-0.00046734	363.8936002033747	55.962	0.35847	56.712	56.489	56.847	0.75014					12	6	2	0	0	0	0.62015	1	21155	21155		12.856	1.957	1	2911700			56551	13764	41171	41500	55216	55216					0.11859765925191823
TVVRNDQRQ	9	Unmodified	_TVVRNDQRQ_					0	0	0			REV__ENSG00000176988|ENST00000370467|FMR1NB	REV__ENSG00000176988|ENST00000370467|FMR1NB	MSMS	A375_MHC_IP_R2	2	372.5950927734375	3	372.535383	1114.58432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.332	1	50.089	49.589	50.589	0.75737								0	0	0	0.15486	1	18536	18536		3.8763	0	1		+		56552	21434	41172	41501	55217	55217					0.03160976446656605
TVVRWRRDKQY	11	Unmodified	_TVVRWRRDKQY_					0	0	0			REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF	REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.17657470703125	3	502.947786	1505.82153	-0.6087	-0.00030614	-0.48428	-0.00024357	-1.093	-0.00054971	502.947256519576	39.719	0.55747	39.719	39.441	39.999	0					14	10	2	0	0	0	1.0011	1	13485	13485		0.45452	0	1	2758500	+		56553	17805	41173	41502	55218	55218					0.0888512266003545
TVVSGKKVLIY	11	Unmodified	_TVVSGKKVLIY_					0	0	0			REV__MMRN1|p.S879L|1|0.43|ENSG00000138722|chr4:89936316-89936316|C/T|missense_variant	REV__MMRN1|p.S879L|1|0.43|ENSG00000138722|chr4:89936316-89936316|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	603.5931396484375	2	603.876456	1205.73836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.511	1	97.511	97.011	98.011	0								0	0	0	0.16297	1	35825	35825		3.2813	0.97858	1		+		56554	27028	41174	41503	55219	55219					0.14371993159488738
TVVSPSPNNF	10	Unmodified	_TVVSPSPNNF_					0	0	0			REV__RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant	REV__RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	531.2166748046875	2	531.266739	1060.51892	-0.60677	-0.00032235	-0.22915	-0.00012174	-0.83591	-0.00044409	531.266687883439	43.792	0.61084	43.792	43.502	44.113	0					22	11	3	0	0	0	0.69833	1	15168	15168		13.042	13.042	1	2030900	+		56555	22822	41175	41504	55220	55220					-0.008914377990549838
TVVTPKILANL	11	Unmodified	_TVVTPKILANL_					0	0	0		OR8H3|p.T82I|1|0.13|ENSG00000181761|chr11:56122617-56122617|C/T|missense_variant	OR8H3|p.T82I|1|0.13|ENSG00000181761|chr11:56122617-56122617|C/T|missense_variant	OR8H3|p.T82I|1|0.13|ENSG00000181761|chr11:56122617-56122617|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	390.2887268066406	3	390.24818	1167.72271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.73	1	73.73	73.23	74.23	0								0	0	0	0.16305	1	26852	26852		2.8433	0	1				56556	15096	41176	41505	55221	55221					0.1455570664240895
TVWDARLY	8	Unmodified	_TVWDARLY_					0	0	0		AMY1C|p.F330V|1|0.26|ENSG00000187733|chr1:103754608-103754608|T/G|missense_variant	AMY1C|p.F330V|1|0.26|ENSG00000187733|chr1:103754608-103754608|T/G|missense_variant	AMY1C|p.F330V|1|0.26|ENSG00000187733|chr1:103754608-103754608|T/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	511.6387023925781	2	512.266542	1022.51853	-0.88323	-0.00045245	4.144	0.0021228	3.2608	0.0016704	512.2682181169284	50.6	0.5068	51.354	51.006	51.513	0.75406					13	9	2	0	0	0	0.90224	1	18987	18987		8.5933	0	1	2636000			56557	125	41177	41506	55222	55222					0.008171872717412043
TVWDKIGF	8	Unmodified	_TVWDKIGF_					0	0	0			REV__ENST00000544442.5_1_12:121784793-121790143:-|nuORF	REV__ENST00000544442.5_1_12:121784793-121790143:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	483.65704345703125	2	483.258185	964.501818	-0.67541	-0.0003264	-1.2795	-0.00061832	-1.9549	-0.00094471	483.257872508287	39.419	1.1192	40.194	39.607	40.727	0.77451					36	21	2	0	0	0	0.90775	1	14699	14699		14.838	0	1	2554000	+		56558	15394	41178	41507	55223	55223					0.018146863858191864
TVWEIPQLL	9	Unmodified	_TVWEIPQLL_					0	0	0		ENST00000358127.8_1_9:36839512-36839866:-|nuORF	ENST00000358127.8_1_9:36839512-36839866:-|nuORF	ENST00000358127.8_1_9:36839512-36839866:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	550.1841430664062	2	549.813325	1097.6121	-0.44732	-0.00024594	-3.5689	-0.0019622	-4.0162	-0.0022082	549.8125696829687	97.228	0.45512	97.228	96.934	97.389	0					11	8	2	0	0	0	0.3243	1	35701	35701		28.487	13.649	1	823430			56559	10992	41179	41508	55224	55224					0.06719486654196771
TVWGHRLPD	9	Unmodified	_TVWGHRLPD_					0	0	0			REV__ENST00000375279.6_1_20:32236165-32236447:+|nuORF	REV__ENST00000375279.6_1_20:32236165-32236447:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	361.2569274902344	3	360.857686	1079.55123	-0.073137	-2.6392E-05	-1.8576	-0.00067032	-1.9307	-0.00069671	360.8568554605157	24.088	0.70929	24.088	23.838	24.547	0					14	13	2	0	0	0	0.63327	1	6775	6775		12.873	0.63195	1	6318200	+		56560	24126	41180	41509	55225	55225					0.014633943946137151
TVWMGNGNW	9	Unmodified	_TVWMGNGNW_					0	0	0			REV__ENST00000527187.5_1_1:25712128-25747316:-|nuORF	REV__ENST00000527187.5_1_1:25712128-25747316:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	532.18798828125	2	532.734551	1063.45455	-0.7036	-0.00037483	-1.6988	-0.00090502	-2.4024	-0.0012799	533.2359094639539	46.512	0.40198	46.512	46.245	46.647	0					11	7	2	0	0	0	0.75466	1	16350	16350		7.9102	0	1	915100	+		56561	25782	41181	41510	55226	55226					-0.07463916156848427
TVWNKCLTI	9	Unmodified	_TVWNKCLTI_					0	0	0		ENSG00000101871|ENST00000317552|MID1	ENSG00000101871|ENST00000317552|MID1	ENSG00000101871|ENST00000317552|MID1	MULTI-SECPEP	A375_MHC_IP_R1	1	539.2081298828125	2	539.291702	1076.56885	-0.99984	-0.00053921	2.1916	0.0011819	1.1918	0.00064272	539.2924582575648	41.595	0.3578	41.595	41.368	41.725	0					10	6	2	0	0	0	0.53748	1	14409	14409		13.042	0	1	1315200			56562	2331	41182	41511	55227	55227					0.033629736052489534
TVWRLEEFRRF	11	Unmodified	_TVWRLEEFRRF_					0	0	0		HLA-DRA|p.G74R|1|0.26|ENSG00000204287|chr6:32442585-32442585|G/A|missense_variant	HLA-DRA|p.G74R|1|0.26|ENSG00000204287|chr6:32442585-32442585|G/A|missense_variant	HLA-DRA|p.G74R|1|0.26|ENSG00000204287|chr6:32442585-32442585|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	513.66064453125	3	513.612404	1537.81538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.94	1	83.68	83.18	84.18	0.73962								0	0	0	0.16334	1	31516	31516		1.3296	0	1				56563	14127	41183	41512	55228	55228					0.06798604428468025
TVYAKTID	8	Unmodified	_TVYAKTID_					0	0	0		ENSG00000116489|ENST00000263168|CAPZA1	ENSG00000116489|ENST00000263168|CAPZA1	ENSG00000116489|ENST00000263168|CAPZA1	MULTI-SECPEP	A375_MHC_IP_R1	1	456.1473388671875	2	455.74765	909.480748	-0.20055	-9.1399E-05	0.30681	0.00013983	0.10626	4.8426E-05	455.7476429805919	55.661	0.76286	55.661	55.228	55.991	0					22	14	2	0	0	0	0.55372	1	19929	19929		57.471	6.6163	1	3160400			56564	3400	41184	41513	55229	55229					0.02238676286287955
TVYGEPRKL	9	Unmodified	_TVYGEPRKL_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;MAGEA4|p.T248I|1|0.21|ENSG00000147381|chrX:151924407-151924407|C/T|missense_variant	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-SECPEP	A375_MHC_IP_R1	1	531.6481323242188	2	531.800749	1061.58694	-0.62279	-0.0003312	-0.74328	-0.00039528	-1.3661	-0.00072648	531.8006555086943	25.229	1.0654	25.229	25.053	26.118	0					81	20	5	0	0	0	0.011031	1	7323	7323		117.76	42.832	1	362190000			56565	520	41185	41514	55230	55230					0.05861431851622001
TVYGEPRKL	9	Unmodified	_TVYGEPRKL_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;MAGEA4|p.T248I|1|0.21|ENSG00000147381|chrX:151924407-151924407|C/T|missense_variant	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-SECPEP	A375_MHC_IP_R2	2	532.1998901367188	2	531.800749	1061.58694	-1.0539	-0.00056048	-0.67288	-0.00035784	-1.7268	-0.00091831	531.8006479843206	24.595	1.0678	25.239	25.06	26.128	0.64368					78	20	5	0	0	0	0.010853	1	8103	8103		140.63	44.522	1	299400000			56566	520	41185	41514	55231	55231					0.05861431851622001
TVYGGLMYI	9	Oxidation (M)	_TVYGGLM(Oxidation (M))YI_		TVYGGLM(1)YI		TVYGGLM(64)YI	0	0	1		ENSG00000198642|ENST00000359039|KLHL9	ENSG00000198642|ENST00000359039|KLHL9	ENSG00000198642|ENST00000359039|KLHL9	MULTI-MSMS	A375_MHC_IP_R2	2	1033.35107421875	1	1032.50705	1031.49977	0.085652	8.8436E-05	-0.66862	-0.00069035	-0.58297	-0.00060192	1032.5065004658047	104.28	1.1698	105.04	104.14	105.31	0.76308					31	22	2	0	0	0	0.051888	1	39306	39306		63.563	19.156	1	2191400			56567	9293	41186	41515	55232	55232		424			-0.014721104143291086
TVYGHSMDS	9	Unmodified	_TVYGHSMDS_					0	0	0			REV__EPHX2|p.N359Ifs*43|1|0.12|ENSG00000120915|chr8:27525378-27525378|A/-|frameshift_variant	REV__EPHX2|p.N359Ifs*43|1|0.12|ENSG00000120915|chr8:27525378-27525378|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	499.1081848144531	2	498.708199	995.401846	-0.46672	-0.00023276	0.69043	0.00034432	0.22371	0.00011157	498.7085067679098	70.166	0.60895	70.901	70.54	71.149	0.73421					23	11	3	0	0	0	0.73363	1	26557	26557		10.824	5.0921	1	2657500	+		56568	18143	41187	41516	55233	55233					-0.09603919010305617
TVYIHDDSM	9	Unmodified	_TVYIHDDSM_					0	0	0		nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-SECPEP	A375_MHC_IP_R1	1	540.1788940429688	2	540.736957	1079.45936	-0.60535	-0.00032734	-0.29832	-0.00016131	-0.90367	-0.00048865	540.7370081910185	42.107	0.8129	42.107	41.674	42.487	0					18	15	2	0	0	0	0.65246	1	14578	14578		15.847	0	1	1361300			56569	5027	41188	41517	55234	55234					-0.0771907680473305
TVYNPELDKW	10	Unmodified	_TVYNPELDKW_					0	0	0		ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	MULTI-SECPEP	A375_MHC_IP_R2	2	632.1674194335938	2	632.814053	1263.61355	-0.73515	-0.00046521	0.10164	6.432E-05	-0.63351	-0.00040089	632.8142057856281	70.101	0.35472	70.835	70.591	70.946	0.73421					9	6	2	0	0	0	0.84651	1	26544	26544		29.437	26.156	1	1465800			56570	8163	41189	41518	55235	55235					-0.007709240477197454
TVYNPELDKW	10	Unmodified	_TVYNPELDKW_					0	0	0		ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	MULTI-MATCH	A375_MHC_IP_R1	1		2	632.814053	1263.61355	-0.59512	-0.0003766	0.38211	0.00024181	-0.21301	-0.00013479	632.8140686307837	70.673	0.40761	70.673	70.494	70.902	0	-0.08079	0.00017964	NaN	29.437	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1477400			56571	8163	41189	41518							-0.007709240477197454
TVYPKPEEW	9	Unmodified	_TVYPKPEEW_					0	0	0		ENSG00000102978|ENST00000219252|POLR2C;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF	ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	MULTI-MSMS	A375_MHC_IP_R1	1	575.1843872070312	2	574.784764	1147.55498	-0.18978	-0.00010908	-0.27525	-0.00015821	-0.46503	-0.00026729	574.7845632790654	55.307	1.8282	55.307	54.771	56.599	0					103	35	4	0	0	0	0.0099737	6	19716	19688;19709;19716;19855;19935;19961		96.367	56.409	1	149350000			56572	2407	41190	41519	55236;55237;55238;55239;55240;55241	55238					-0.012899806221867038
TVYPKPEEW	9	Unmodified	_TVYPKPEEW_					0	0	0		ENSG00000102978|ENST00000219252|POLR2C;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF	ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	MULTI-MSMS	A375_MHC_IP_R2	2	575.18408203125	2	574.784764	1147.55498	-0.38855	-0.00022334	-0.1852	-0.00010645	-0.57375	-0.00032979	574.7846132818838	54.629	1.7258	55.38	54.865	56.591	0.75075					99	33	4	0	0	0	0.0090499	3	20545	20545;20627;20778		106.94	60.919	1	141040000			56573	2407	41190	41519	55242;55243;55244	55242					-0.012899806221867038
TVYRSGESF	9	Unmodified	_TVYRSGESF_					0	0	0		nc|ENSG00000118523|P29279-2|CCN2;ENSG00000118523|ENST00000367976|CCN2	nc|ENSG00000118523|P29279-2|CCN2	nc|ENSG00000118523|P29279-2|CCN2	MSMS	A375_MHC_IP_R1	1	523.2059326171875	2	523.251089	1044.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.87	1	64.87	64.37	65.37	0								0	0	0	0.1493	1	23479	23479		22.736	2.2827	1				56574	3550	41191	41520	55245	55245					-0.03284010833135653
TVYTGIDHHW	10	Unmodified	_TVYTGIDHHW_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13;ENST00000495256.1_1_7:105766226-105766550:+|nuORF	ENSG00000164934|ENST00000612750|DCAF13;ENST00000495256.1_1_7:105766226-105766550:+|nuORF	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	A375_MHC_IP_R1	1	410.59637451171875	3	410.196367	1227.56727	0.2351	9.6437E-05	0.010935	4.4855E-06	0.24603	0.00010092	410.19636627049675	44.292	0.96996	44.292	44.01	44.98	0					34	18	3	0	0	0	0.029956	1	15433	15433		67.838	51.272	1	8601900			56575	6895;12702	41192	41521	55246	55246					-0.03740944159153514
TVYTGIDHHW	10	Unmodified	_TVYTGIDHHW_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13;ENST00000495256.1_1_7:105766226-105766550:+|nuORF	ENSG00000164934|ENST00000612750|DCAF13;ENST00000495256.1_1_7:105766226-105766550:+|nuORF	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	A375_MHC_IP_R1	1	615.1907348632812	2	614.790912	1227.56727	-0.12705	-7.811E-05	0.060244	3.7037E-05	-0.066808	-4.1073E-05	614.7909462401799	44.306	0.35815	44.306	44.113	44.471	0					15	6	3	0	0	0	0.053475	1	15457	15457		74.929	74.929	1	2109700			56576	6895;12702	41192	41521	55247	55247					-0.03740944159153514
TVYTGIDHHW	10	Unmodified	_TVYTGIDHHW_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13;ENST00000495256.1_1_7:105766226-105766550:+|nuORF	ENSG00000164934|ENST00000612750|DCAF13;ENST00000495256.1_1_7:105766226-105766550:+|nuORF	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	A375_MHC_IP_R2	2	410.5960693359375	3	410.196367	1227.56727	0.18097	7.4233E-05	-0.30262	-0.00012414	-0.12166	-4.9903E-05	410.1962164238517	43.539	0.65696	44.311	44.028	44.685	0.7724					35	12	4	0	0	0	0.06683	1	16201	16201		51.415	37.897	1	7766500			56577	6895;12702	41192	41521	55248	55248					-0.03740944159153514
TVYVDFQYF	9	Unmodified	_TVYVDFQYF_					0	0	0		nc|ENSG00000136114|Q9NS62-3|THSD1;nc|ENSG00000136114|Q9NS62-2|THSD1;ENSG00000136114|ENST00000258613|THSD1	nc|ENSG00000136114|Q9NS62-3|THSD1	nc|ENSG00000136114|Q9NS62-3|THSD1	MULTI-MSMS	A375_MHC_IP_R1	1	394.9222412109375	3	394.521969	1180.54408	0.11441	4.5138E-05	0.49172	0.00019399	0.60613	0.00023913	394.5221315799645	40.512	0.60851	40.512	40.304	40.913	0					18	11	2	0	0	0	0.35581	1	13971	13971		19.362	4.4048	1	3076300			56578	4754	41193	41522	55249	55249					-0.03897382996478882
TVYVDFQYF	9	Unmodified	_TVYVDFQYF_					0	0	0		nc|ENSG00000136114|Q9NS62-3|THSD1;nc|ENSG00000136114|Q9NS62-2|THSD1;ENSG00000136114|ENST00000258613|THSD1	nc|ENSG00000136114|Q9NS62-3|THSD1	nc|ENSG00000136114|Q9NS62-3|THSD1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	394.521969	1180.54408	0.11441	4.5138E-05	0.49172	0.00019399	0.60613	0.00023913	394.5221315799645	40.512	0.60851	40.512	40.304	40.913	0	0.01844	-0.00024375	NaN	19.362	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3076300			56579	4754	41193	41522							-0.03897382996478882
TVYVDFQYF	9	Unmodified	_TVYVDFQYF_					0	0	0		nc|ENSG00000136114|Q9NS62-3|THSD1;nc|ENSG00000136114|Q9NS62-2|THSD1;ENSG00000136114|ENST00000258613|THSD1	nc|ENSG00000136114|Q9NS62-3|THSD1	nc|ENSG00000136114|Q9NS62-3|THSD1	MULTI-MATCH	A375_MHC_IP_R2	2		3	394.521969	1180.54408	-0.19408	-7.657E-05	0.89172	0.00035181	0.69764	0.00027524	394.52232283215733	39.701	0.86283	40.475	40.219	41.082	0.77451	-0.01844	0.00022968	NaN	19.362	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3411500			56580	4754	41193	41522							-0.03897382996478882
TVYVHRQYSF	10	Unmodified	_TVYVHRQYSF_					0	0	0			REV__ENST00000532485.5_1_11:76734550-76734952:+|nuORF	REV__ENST00000532485.5_1_11:76734550-76734952:+|nuORF	MSMS	A375_MHC_IP_R1	1	433.61993408203125	3	433.887533	1298.64077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.78	1	139.78	139.28	140.28	0								0	0	0	0.15435	1	53713	53713		3.5871	0.95582	1		+		56581	25868	41194	41523	55250	55250					0.003396042833401225
TVYVHRQYSF	10	Unmodified	_TVYVHRQYSF_					0	0	0			REV__ENST00000532485.5_1_11:76734550-76734952:+|nuORF	REV__ENST00000532485.5_1_11:76734550-76734952:+|nuORF	MSMS	A375_MHC_IP_R1	1	433.61962890625	3	433.887533	1298.64077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.05	1	141.05	140.55	141.55	0								0	0	0	0.15435	1	54154	54154		3.5871	0.95582	1		+		56582	25868	41194	41523	55251	55251					0.003396042833401225
TVYVHRQYSF	10	Unmodified	_TVYVHRQYSF_					0	0	0			REV__ENST00000532485.5_1_11:76734550-76734952:+|nuORF	REV__ENST00000532485.5_1_11:76734550-76734952:+|nuORF	MSMS	A375_MHC_IP_R1	1	433.6194763183594	3	433.887533	1298.64077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.2	1	141.2	140.7	141.7	0								0	0	0	0.15531	1	54206	54206		1.7423	0.63252	1		+		56583	25868	41194	41523	55252	55252					0.003396042833401225
TVYVHRQYSF	10	Unmodified	_TVYVHRQYSF_					0	0	0			REV__ENST00000532485.5_1_11:76734550-76734952:+|nuORF	REV__ENST00000532485.5_1_11:76734550-76734952:+|nuORF	MSMS	A375_MHC_IP_R2	2	433.6197509765625	3	433.887533	1298.64077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.18	1	141.23	140.73	141.73	0.04216								0	0	0	0.15531	1	55233	55233		1.7423	0.52744	1		+		56584	25868	41194	41523	55253	55253					0.003396042833401225
TVYVRVPDF	9	Unmodified	_TVYVRVPDF_					0	0	0		ENSG00000134757|ENST00000257189|DSG3	ENSG00000134757|ENST00000257189|DSG3	ENSG00000134757|ENST00000257189|DSG3	MULTI-SECPEP	A375_MHC_IP_R1	1	547.7322998046875	2	548.295299	1094.57605	-0.5272	-0.00028906	-1.8207	-0.00099831	-2.3479	-0.0012874	548.2936875255106	91.832	0.40286	91.832	91.503	91.906	0					14	7	3	0	0	0	0.74412	1	33769	33769		6.2058	0	1	1663400			56585	4603	41195	41524	55254	55254					0.03254029477329823
TVYYAGLKY	9	Unmodified	_TVYYAGLKY_					0	0	0			REV__ENSG00000162377|ENST00000371538|COA7	REV__ENSG00000162377|ENST00000371538|COA7	MULTI-SECPEP	A375_MHC_IP_R2	2	539.63427734375	2	539.2844	1076.55425	-1.1272	-0.0006079	-1.5916	-0.00085832	-2.7188	-0.0014662	539.2815197882684	57.844	0.50599	58.593	58.323	58.829	0.74894					12	9	2	0	0	0	0.71541	1	21870	21870		11.64	4.9171	1	840810	+		56586	20244	41196	41525	55255	55255					0.01903224728744135
TWAGARPTL	9	Unmodified	_TWAGARPTL_					0	0	0		nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2;ENST00000472204.1_1_7:150769094-150771461:+|nuORF	nc|ENSG00000164889|P04920-2|SLC4A2	nc|ENSG00000164889|P04920-2|SLC4A2	MULTI-MSMS	A375_MHC_IP_R2	2	486.6792297363281	2	486.766709	971.518865	-1.1473	-0.00055844	-0.24204	-0.00011782	-1.3893	-0.00067626	486.76651168996966	53.013	1.1729	53.764	53.436	54.609	0.75105					42	22	3	0	0	0	0.38603	1	20249	20249		25.399	7.2643	1	22160000			56587	6890	41197	41526	55256	55256					0.03196606991616591
TWAPEHREQEW	11	Unmodified	_TWAPEHREQEW_					0	0	0		ENSG00000110811|ENST00000290510|P3H3;nc|ENSG00000110811|Q8IVL6-2|P3H3	ENSG00000110811|ENST00000290510|P3H3	ENSG00000110811|ENST00000290510|P3H3	MULTI-MSMS	A375_MHC_IP_R1	1	490.6472473144531	3	490.224985	1467.65313	-0.31926	-0.00015651	-0.080386	-3.9407E-05	-0.39965	-0.00019592	490.2251203487878	57.879	0.55901	57.879	57.669	58.228	0					17	10	2	0	0	0	0.73795	1	20713	20713		1.3296	0	1	1511900			56588	2950	41198	41527	55257	55257					-0.06199404044309631
TWCHTWFTGQ	10	Unmodified	_TWCHTWFTGQ_					0	0	0			REV__ENST00000368842.9_1_10:126302354-126302678:+|nuORF	REV__ENST00000368842.9_1_10:126302354-126302678:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	634.1698608398438	2	633.771665	1265.52878	-0.69665	-0.00044152	-1.7898	-0.0011343	-2.4865	-0.0015759	633.770160853312	87.398	0.7593	88.13	87.811	88.57	0.73206					18	14	2	0	0	0	0.93961	1	33287	33287		3.2813	0.28607	1	2105800	+		56589	24002	41199	41528	55258	55258					-0.09336573065320408
TWDEEQPQK	9	Unmodified	_TWDEEQPQK_					0	0	0			REV__nc|ENSG00000188199|A6NNL0-2|NUTM2B	REV__nc|ENSG00000188199|A6NNL0-2|NUTM2B	MULTI-SECPEP	A375_MHC_IP_R1	1	387.9123229980469	3	387.512132	1159.51457	-0.095361	-3.6954E-05	0.64364	0.00024942	0.54828	0.00021246	387.51234929319895	26.698	0.50323	26.698	26.524	27.027	0					21	8	4	0	0	0	0.79191	1	8024	8024		2.086	0	1	7171000	+		56590	21846	41200	41529	55259	55259					-0.05880947012633442
TWDRIYSL	8	Unmodified	_TWDRIYSL_					0	0	0		ENST00000509538.5_1_4:185573199-185578558:+|nuORF	ENST00000509538.5_1_4:185573199-185578558:+|nuORF	ENST00000509538.5_1_4:185573199-185578558:+|nuORF	MSMS	A375_MHC_IP_R1	1	527.1841430664062	2	527.271824	1052.5291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.117	1	55.117	54.617	55.617	0								0	0	0	0.16876	1	19702	19702		28.487	0.85804	1				56591	12892	41201	41530	55260	55260					0.004931699261760514
TWDSAIDTW	9	Unmodified	_TWDSAIDTW_					0	0	0		nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978|HNRNPK	nc|ENSG00000165119|P61978|HNRNPK	MSMS	A375_MHC_IP_R2	2	547.6737670898438	2	547.743096	1093.47164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.277	1	50.035	49.535	50.535	0.75737								0	0	0	0.15486	1	18515	18515		10.824	0.64053	1				56592	6916	41202	41531	55261	55261					-0.071357170700594
TWDYTNPNL	9	Unmodified	_TWDYTNPNL_					0	0	0		ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF;ENST00000421896.1_1_6:7482046-7482310:-|nuORF	ENSG00000104824|ENST00000221419|HNRNPL	ENSG00000104824|ENST00000221419|HNRNPL	MSMS	A375_MHC_IP_R1	1	562.174560546875	2	562.256371	1122.49819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.08	1	110.08	109.58	110.58	0								0	0	0	0.15486	1	40366	40366		6.7232	0	1				56593	2539	41203	41532	55262	55262					-0.058160281787195345
TWEIEDVYL	9	Unmodified	_TWEIEDVYL_					0	0	0			REV__ENST00000553777.1_1_14:23386935-23387010:-|nuORF	REV__ENST00000553777.1_1_14:23386935-23387010:-|nuORF	MSMS	A375_MHC_IP_R2	2	584.2616577148438	2	584.282054	1166.54956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.037	1	84.777	84.277	85.277	0.73962								0	0	0	0.15486	1	31944	31944		7.9102	0	1		+		56594	26069	41204	41533	55263	55263					-0.027057042046635615
TWHYYRFRPRW	11	Unmodified	_TWHYYRFRPRW_					0	0	0			REV__nc|ENSG00000124140|Q9H2X9|SLC12A5	REV__nc|ENSG00000124140|Q9H2X9|SLC12A5	MULTI-MSMS	A375_MHC_IP_R1	1	557.0159301757812	3	556.616259	1666.82695	-0.48682	-0.00027097	0.14384	8.0065E-05	-0.34298	-0.00019091	556.6162506004079	57.066	0.45864	57.066	56.804	57.263	0					19	8	3	0	0	0	0.73679	1	20456	20456		2.4348	2.0265	1	6352600	+		56595	18273	41205	41534	55264	55264					0.02020846242476182
TWHYYRFRPRW	11	Unmodified	_TWHYYRFRPRW_					0	0	0			REV__nc|ENSG00000124140|Q9H2X9|SLC12A5	REV__nc|ENSG00000124140|Q9H2X9|SLC12A5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	556.616259	1666.82695	-1.0784	-0.00060027	0.40459	0.0002252	-0.67383	-0.00037507	556.6165485390093	56.373	0.61272	57.123	56.693	57.306	0.75015	0.028152	0.00028235	NaN	2.4348	25	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7524500	+		56596	18273	41205	41534							0.02020846242476182
TWKVGRGGG	9	Unmodified	_TWKVGRGGG_					0	0	0			REV__L1PB1_dup12829|chr21:46585548-46587567:+|1.182533549073013|0.3950341382787979|1.58|465.0|140|3|anti-sense	REV__L1PB1_dup12829|chr21:46585548-46587567:+|1.182533549073013|0.3950341382787979|1.58|465.0|140|3|anti-sense	MSMS	A375_MHC_IP_R2	2	459.2890319824219	2	459.251226	916.487899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.929	1	44.698	44.198	45.198	0.7691								0	0	0	0.15486	1	16383	16383		6.2058	0.44535	1		+		56597	26900	41206	41535	55265	55265					0.026314536773952568
TWLGQTQY	8	Unmodified	_TWLGQTQY_					0	0	0		ENSG00000153339|ENST00000283351|TRAPPC8;nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	ENSG00000153339|ENST00000283351|TRAPPC8	ENSG00000153339|ENST00000283351|TRAPPC8	MSMS	A375_MHC_IP_R2	2	498.6611633300781	2	498.742899	995.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.34	1	47.106	46.606	47.606	0.76519								0	0	0	0.16876	1	17353	17353		26.884	3.7352	1				56598	6027	41207	41536	55266	55266					-0.026670919992398012
TWLWWRRWAWS	11	Unmodified	_TWLWWRRWAWS_					0	0	0			REV__ENST00000308064.6_1_11:45673544-45686758:-|nuORF	REV__ENST00000308064.6_1_11:45673544-45686758:-|nuORF	MSMS	A375_MHC_IP_R1	1	817.3513793945312	2	817.412395	1632.81024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.13	1	120.13	119.63	120.63	0								0	0	0	0.16258	1	44477	44477		5.2969	3.9674	1		+		56599	23480	41208	41537	55267	55267					0.019143453565675372
TWLWWRRWAWS	11	Unmodified	_TWLWWRRWAWS_					0	0	0			REV__ENST00000308064.6_1_11:45673544-45686758:-|nuORF	REV__ENST00000308064.6_1_11:45673544-45686758:-|nuORF	MSMS	A375_MHC_IP_R1	1	817.7380981445312	2	817.412395	1632.81024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.49	1	121.49	120.99	121.99	0								0	0	0	0.16316	1	45116	45116		2.2828	0.19677	1		+		56600	23480	41208	41537	55268	55268					0.019143453565675372
TWNRLWRWRHQ	11	Unmodified	_TWNRLWRWRHQ_					0	0	0		nc|ENSG00000198089|A8K8P3-4|SFI1;nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;nc|ENSG00000198089|A8K8P3-5|SFI1;ENST00000382162.7_1_22:31904270-32000328:+|nuORF	nc|ENSG00000198089|A8K8P3-4|SFI1	nc|ENSG00000198089|A8K8P3-4|SFI1	MULTI-MSMS	A375_MHC_IP_R1	1	547.187744140625	3	546.955275	1637.844	-0.49724	-0.00027197	-1.2318	-0.00067373	-1.729	-0.0009457	547.289245381728	55.681	0.66323	55.681	55.228	55.891	0					19	12	2	0	0	0	0.73934	1	19809	19809		0	0	1	5642900			56601	9228	41209	41538	55269	55269					0.050587668482876325
TWNRLWRWRHQ	11	Unmodified	_TWNRLWRWRHQ_					0	0	0		nc|ENSG00000198089|A8K8P3-4|SFI1;nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;nc|ENSG00000198089|A8K8P3-5|SFI1;ENST00000382162.7_1_22:31904270-32000328:+|nuORF	nc|ENSG00000198089|A8K8P3-4|SFI1	nc|ENSG00000198089|A8K8P3-4|SFI1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	546.955275	1637.844	-0.95128	-0.00052031	-1.3127	-0.00071797	-2.2639	-0.0012383	547.289057487199	54.852	0.91545	55.603	55.169	56.084	0.75075	-0.039216	-4.2993E-05	NaN	0	31	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7779000			56602	9228	41209	41538							0.050587668482876325
TWRRRSRRKKR	11	Unmodified	_TWRRRSRRKKR_					0	0	0		ENST00000515223.1_1_5:180651261-180651336:+|nuORF	ENST00000515223.1_1_5:180651261-180651336:+|nuORF	ENST00000515223.1_1_5:180651261-180651336:+|nuORF	MSMS	A375_MHC_IP_R1	1	793.5104370117188	2	793.490365	1584.96618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.598	1	96.598	96.098	97.098	0								0	0	0	0.1636	1	35499	35499		0	0	1				56603	12948	41210	41539	55270	55270					0.19709228650503974
TWSPGWVGW	9	Unmodified	_TWSPGWVGW_					0	0	0			REV__ENST00000562701.5_1_16:28997691-29001330:+|nuORF	REV__ENST00000562701.5_1_16:28997691-29001330:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	538.231201171875	2	538.253434	1074.49232	-0.64189	-0.0003455	0.79192	0.00042625	0.15003	8.0756E-05	538.2538938599076	73.05	0.8627	73.05	72.676	73.539	0					28	16	2	0	0	0	0.65721	1	26589	26589		10.824	2.2306	1	2354400	+		56604	26192	41211	41540	55271	55271					-0.04195081899729303
TWSWYEWYRW	10	Unmodified	_TWSWYEWYRW_					0	0	0			REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF	REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	392.0779113769531	4	391.426748	1561.67788	0.55819	0.00021849	0.40758	0.00015954	0.96577	0.00037803	391.6777348825133	48.595	0.45525	48.595	48.375	48.831	0					16	8	3	0	0	0	0.95062	1	17193	17193		0	0	1	3740300	+		56605	23404	41212	41541	55272	55272					-0.08048724170907917
TWSYFLENL	9	Unmodified	_TWSYFLENL_					0	0	0		tr|U7SHZ2|U7SHZ2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02205PE=4SV=1	tr|U7SHZ2|U7SHZ2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02205PE=4SV=1	tr|U7SHZ2|U7SHZ2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02205PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	391.94512939453125	3	391.525602	1171.55498	-0.24552	-9.6127E-05	4.1366	0.0016196	3.8911	0.0015235	391.52687148987906	32.783	0.35452	33.52	33.317	33.671	0.73692					10	6	2	0	0	0	0.74412	1	11665	11665		14.405	2.2306	1	1877700			56606	29425	41213	41542	55273	55273					-0.023939806221733306
TWTINDQS	8	Unmodified	_TWTINDQS_					0	0	0			REV__ENSG00000103740|ENST00000258873|ACSBG1	REV__ENSG00000103740|ENST00000258873|ACSBG1	MULTI-SECPEP	A375_MHC_IP_R2	2	482.668701171875	2	482.722164	963.429775	-0.49042	-0.00023674	-0.48506	-0.00023415	-0.97548	-0.00047088	482.7217786301068	91.62	0.76004	92.354	92.071	92.831	0.7345					29	14	3	0	0	0	0.95423	1	35014	35014		4.3292	1.0479	1	3824500	+		56607	17291	41214	41543	55274	55274					-0.05340272758564879
TWTRQVEFW	9	Unmodified	_TWTRQVEFW_					0	0	0			REV__DNAH9|p.S4145Ffs*44|1|0.38|ENSG00000007174|chr17:11934016-11934016|C/-|frameshift_variant	REV__DNAH9|p.S4145Ffs*44|1|0.38|ENSG00000007174|chr17:11934016-11934016|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	627.2086181640625	2	626.809105	1251.60366	-0.77316	-0.00048462	0.34188	0.00021429	-0.43128	-0.00027033	626.8091868539631	63.071	0.50636	63.813	63.534	64.04	0.74263					24	9	3	0	0	0	0.75164	1	23907	23907		13.906	4.5229	1	4456300	+		56608	16019	41215	41544	55275	55275					-0.012080672624279032
TWTRVRKHRRQ	11	Unmodified	_TWTRVRKHRRQ_					0	0	0			REV__nc|ENSG00000138468|Q9BQF6-3|SENP7	REV__nc|ENSG00000138468|Q9BQF6-3|SENP7	MULTI-MSMS	A375_MHC_IP_R1	1	762.8414916992188	2	762.442549	1522.87055	-0.84696	-0.00064576	-0.21567	-0.00016444	-1.0626	-0.00081019	762.4421905957362	142.45	0.50502	142.45	142.08	142.59	0					30	9	4	0	0	0	0.73925	1	54597	54597		0.30703	0	1	5279200	+		56609	19098	41216	41545	55276	55276					0.1300245573961547
TWTRVRKHRRQ	11	Unmodified	_TWTRVRKHRRQ_					0	0	0			REV__nc|ENSG00000138468|Q9BQF6-3|SENP7	REV__nc|ENSG00000138468|Q9BQF6-3|SENP7	MULTI-MSMS	A375_MHC_IP_R2	2	762.8424072265625	2	762.442549	1522.87055	-0.71608	-0.00054597	-0.081498	-6.2138E-05	-0.79758	-0.00060811	762.4423824002901	142.47	0.66092	142.51	142.08	142.74	0.030731					27	12	3	0	0	0	0.73925	1	55636	55636		0.30703	0	1	7543100	+		56610	19098	41216	41545	55277	55277					0.1300245573961547
TYAFNLARLAD	11	Unmodified	_TYAFNLARLAD_					0	0	0			REV__ENSG00000160294|ENST00000291688|MCM3AP	REV__ENSG00000160294|ENST00000291688|MCM3AP	MULTI-SECPEP	A375_MHC_IP_R1	1	419.2701721191406	3	418.887422	1253.64044	0.092945	3.8934E-05	2.8663	0.0012007	2.9593	0.0012396	418.8882903036527	19.83	0.2544	19.83	19.674	19.928	0					6	4	2	0	0	0	0.9348	1	5016	5016		19.144	0	1	406640	+		56611	20159	41217	41546	55278	55278					0.02376184563490824
TYCSASITLN	10	Unmodified	_TYCSASITLN_					0	0	0			REV__ENSG00000100191|ENST00000266086|SLC5A4	REV__ENSG00000100191|ENST00000266086|SLC5A4	MSMS	A375_MHC_IP_R2	2	536.7235717773438	2	536.752607	1071.49066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.175	1	66.913	66.413	67.413	0.73811								0	0	0	0.1524	1	25081	25081		13.042	2.2185	1		+		56612	17057	41218	41547	55279	55279					-0.04222503770643016
TYDDEDRW	8	Unmodified	_TYDDEDRW_					0	0	0			REV__nc|ENSG00000139737|Q8ND83|SLAIN1	REV__nc|ENSG00000139737|Q8ND83|SLAIN1	MSMS	A375_MHC_IP_R2	2	550.1781005859375	2	550.219985	1098.42542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.306	1	55.057	54.557	55.557	0.75075								0	0	0	0.16876	1	20494	20494		8.5933	3.3626	1		+		56613	19179	41219	41548	55280	55280					-0.11985781972134646
TYDEARNLFT	10	Unmodified	_TYDEARNLFT_					0	0	0			REV__nc|ENSG00000021762|Q9H0X9-3|OSBPL5	REV__nc|ENSG00000021762|Q9H0X9-3|OSBPL5	MULTI-MSMS	A375_MHC_IP_R1	1	615.6924438476562	2	615.293485	1228.57242	-0.19609	-0.00012065	-1.3362	-0.00082214	-1.5323	-0.0009428	615.292803682045	82.116	0.50734	82.116	81.809	82.316	0					11	7	2	0	0	0	0.70179	1	30039	30039		11.495	2.1116	1	2784100	+		56614	27094	41220	41549	55281	55281					-0.03272685087222271
TYDETYQR	8	Unmodified	_TYDETYQR_					0	0	0		nc|ENSG00000058272|O14974-5|PPP1R12A;nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A	nc|ENSG00000058272|O14974-5|PPP1R12A	nc|ENSG00000058272|O14974-5|PPP1R12A	MULTI-MSMS	A375_MHC_IP_R2	2	538.6377563476562	2	538.238178	1074.4618	-1.2332	-0.00066377	1.3361	0.00071917	0.10292	5.5395E-05	538.2382167519016	26.499	0.76301	27.159	26.857	27.62	0.65992					39	14	4	0	0	0	0.74466	1	8974	8974		21.747	1.293	1	21921000			56615	1291	41221	41550	55282	55282					-0.07244905075435781
TYDFFEIIY	9	Unmodified	_TYDFFEIIY_					0	0	0			REV__nc|ENSG00000156535|Q6YHK3-3|CD109	REV__nc|ENSG00000156535|Q6YHK3-3|CD109	MULTI-MSMS	A375_MHC_IP_R2	2	606.6875610351562	2	605.786973	1209.55939	-0.51107	-0.0003096	-0.88598	-0.00053671	-1.397	-0.00084631	606.2880536310216	81.265	0.55607	82.01	81.776	82.332	0.74474					24	10	3	0	0	0	0.63811	1	30861	30861		12.532	0.29089	1	4025600	+		56616	19988	41222	41551	55283	55283					-0.03700516199273807
TYDFSFKL	8	Unmodified	_TYDFSFKL_					0	0	0		APOB|p.S3345L|1|0.25|ENSG00000084674|chr2:21006834-21006834|G/A|missense_variant	APOB|p.S3345L|1|0.25|ENSG00000084674|chr2:21006834-21006834|G/A|missense_variant	APOB|p.S3345L|1|0.25|ENSG00000084674|chr2:21006834-21006834|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	510.9737243652344	2	510.755475	1019.4964	-1.11	-0.00056694	-1.2167	-0.00062145	-2.3267	-0.0011884	510.7551797034317	26.336	1.3257	26.996	26.805	28.131	0.65992					30	25	2	0	0	0	0.77123	1	8961	8961		14.582	1.0738	1	7024400			56617	160	41223	41552	55284	55284					-0.012570371966603489
TYDLRSEMG	9	Unmodified	_TYDLRSEMG_					0	0	0			REV__ENST00000456812.6_1_1:173834376-173834660:-|nuORF	REV__ENST00000456812.6_1_1:173834376-173834660:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	536.7109375	2	536.242406	1070.47026	-0.98183	-0.0005265	0.064626	3.4655E-05	-0.9172	-0.00049184	536.2424040986024	23.744	0.71122	23.744	23.483	24.194	0					22	13	2	0	0	0	0.65246	1	6750	6750		21.747	4.8044	1	4143900	+		56618	24898	41224	41553	55285	55285					-0.062156744304502354
TYDLTHTLQ	9	Unmodified	_TYDLTHTLQ_					0	0	0		ENST00000445499.2_1_3:45730957-45754662:+|nuORF;ENST00000463237.5_1_3:45730948-45754703:+|nuORF;ENSG00000211456|ENST00000389061|SACM1L;nc|ENSG00000211456|Q9NTJ5-2|SACM1L	ENST00000445499.2_1_3:45730957-45754662:+|nuORF	ENST00000445499.2_1_3:45730957-45754662:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	364.5887451171875	3	364.517106	1090.52949	0.025455	9.2789E-06	0.35274	0.00012858	0.3782	0.00013786	364.5172475274765	19.331	0.18188	19.331	19.238	19.42	0					6	3	2	0	0	0	0.74412	1	4662	4662		6.6304	0.84694	1	4491500			56619	9550	41225	41554	55286	55286					-0.012154551446201367
TYDQHPPYF	9	Unmodified	_TYDQHPPYF_					0	0	0			REV__ENSG00000198756|ENST00000361927|COLGALT2	REV__ENSG00000198756|ENST00000361927|COLGALT2	MULTI-MSMS	A375_MHC_IP_R2	2	584.7238159179688	2	584.258914	1166.50327	-0.39639	-0.00023159	0.43493	0.00025411	0.038542	2.2519E-05	584.7605974637332	42.267	0.35791	43.04	42.809	43.167	0.7724					10	6	2	0	0	0	0.5339	1	15768	15768		18.135	1.9859	1	2068400	+		56620	22413	41226	41555	55287	55287					-0.07331724316100008
TYDQISAQF	9	Unmodified	_TYDQISAQF_					0	0	0			REV__nc|ENSG00000173662|Q7RTX1-2|TAS1R1	REV__nc|ENSG00000173662|Q7RTX1-2|TAS1R1	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1680297851562	2	536.750921	1071.48729	-1.0468	-0.00056186	-4.1592	-0.0022325	-5.206	-0.0027943	537.2484801005281	41.414	0.55651	42.189	41.845	42.401	0.77451					25	10	4	0	0	0	0.69504	1	15376	15376		12.532	0	1	1606600	+		56621	21237	41227	41556	55288	55288					-0.04559430552990307
TYDQRTEF	8	Unmodified	_TYDQRTEF_					0	0	0		nc|ENSG00000100473|O43405-2|COCH;ENSG00000100473|ENST00000396618|COCH	nc|ENSG00000100473|O43405-2|COCH	nc|ENSG00000100473|O43405-2|COCH	MULTI-SECPEP	A375_MHC_IP_R1	1	530.6402587890625	2	530.240721	1058.46689	-0.80635	-0.00042756	0.48466	0.00025699	-0.32169	-0.00017057	530.2407115534265	26.964	0.50149	26.964	26.728	27.229	0					22	9	3	0	0	0	0.76996	1	8082	8082		36.127	10.728	1	12556000			56622	2183	41228	41557	55289	55289					-0.06000601212804213
TYDQRTEF	8	Unmodified	_TYDQRTEF_					0	0	0		nc|ENSG00000100473|O43405-2|COCH;ENSG00000100473|ENST00000396618|COCH	nc|ENSG00000100473|O43405-2|COCH	nc|ENSG00000100473|O43405-2|COCH	MULTI-SECPEP	A375_MHC_IP_R2	2	530.6403198242188	2	530.240721	1058.46689	-0.99828	-0.00052933	0.18318	9.7129E-05	-0.81511	-0.0004322	530.2406742966778	26.328	0.45613	26.988	26.857	27.313	0.65992					20	8	3	0	0	0	0.81376	1	8887	8887		32.305	6.9062	1	15116000			56623	2183	41228	41557	55290	55290					-0.06000601212804213
TYDSVTWQKEP	11	Unmodified	_TYDSVTWQKEP_					0	0	0		MR1|p.R63W|1|0.52|ENSG00000153029|chr1:181049171-181049171|C/T|missense_variant	MR1|p.R63W|1|0.52|ENSG00000153029|chr1:181049171-181049171|C/T|missense_variant	MR1|p.R63W|1|0.52|ENSG00000153029|chr1:181049171-181049171|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	677.7195434570312	2	677.319699	1352.62485	-0.59196	-0.00040094	-1.2233	-0.00082855	-1.8152	-0.0012295	677.3190702574169	92.477	0.25224	93.216	93.089	93.341	0.73902					7	4	2	0	0	0	0.99133	1	35204	35204		10.8	0	1	1645300			56624	14397	41229	41558	55291	55291					-0.037361467442678986
TYDSVTWQKEP	11	Unmodified	_TYDSVTWQKEP_					0	0	0		MR1|p.R63W|1|0.52|ENSG00000153029|chr1:181049171-181049171|C/T|missense_variant	MR1|p.R63W|1|0.52|ENSG00000153029|chr1:181049171-181049171|C/T|missense_variant	MR1|p.R63W|1|0.52|ENSG00000153029|chr1:181049171-181049171|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	677.319699	1352.62485	-0.46132	-0.00031246	-1.8351	-0.001243	-2.2965	-0.0015554	678.3203399866992	93.197	0.45876	93.197	92.871	93.329	0	-0.0093325	-0.00038918	NaN	10.8	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1452300			56625	14397	41229	41558							-0.037361467442678986
TYDTCCSQY	9	Unmodified	_TYDTCCSQY_					0	0	0			REV__ENSG00000109072|ENST00000226218|VTN	REV__ENSG00000109072|ENST00000226218|VTN	MSMS	A375_MHC_IP_R1	1	542.1539916992188	2	542.191525	1082.3685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.831	1	79.831	79.331	80.331	0								0	0	0	0.15486	1	29142	29142		10.824	2.2306	1		+		56626	17570	41230	41559	55292	55292					-0.16939288844514522
TYDTEYHDQ	9	Unmodified	_TYDTEYHDQ_					0	0	0			REV__ENST00000510666.1_1_5:68840710-68849495:+|nuORF	REV__ENST00000510666.1_1_5:68840710-68849495:+|nuORF	MSMS	A375_MHC_IP_R1	1	586.1058349609375	2	586.23055	1170.44655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.159	1	85.159	84.659	85.659	0								0	0	0	0.1499	1	31207	31207		21.747	6.9084	1		+		56627	22320	41231	41560	55293	55293					-0.13185816663281003
TYDVGTEPH	9	Unmodified	_TYDVGTEPH_					0	0	0			REV__NID2|p.G779E|1|0.16|ENSG00000087303|chr14:52029612-52029612|C/T|missense_variant	REV__NID2|p.G779E|1|0.16|ENSG00000087303|chr14:52029612-52029612|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	510.7027282714844	2	509.727446	1017.44034	-0.59668	-0.00030414	0.15079	7.6863E-05	-0.44589	-0.00022728	509.72732732395644	27.057	0.70489	27.057	26.828	27.533	0					42	13	5	0	0	0	0.35581	1	8212	8212		26.884	0	1	81303000	+		56628	27602	41232	41561	55294	55294					-0.06768290104128027
TYECARNRTKY	11	Unmodified	_TYECARNRTKY_					0	0	0			REV__ENST00000478923.1_1_X:15768116-15768332:+|nuORF	REV__ENST00000478923.1_1_X:15768116-15768332:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	703.2374267578125	2	702.838068	1403.66158	-0.64314	-0.00045202	-0.52169	-0.00036666	-1.1648	-0.00081868	702.837524262974	61.348	0.66339	61.348	60.973	61.636	0					24	12	3	0	0	0	0.17205	1	22085	22085		57.722	9.9733	1	4877500	+		56629	25224	41233	41562	55295	55295					-0.024101733993120433
TYECARNRTKY	11	Unmodified	_TYECARNRTKY_					0	0	0			REV__ENST00000478923.1_1_X:15768116-15768332:+|nuORF	REV__ENST00000478923.1_1_X:15768116-15768332:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	703.7384643554688	2	702.838068	1403.66158	-1.0111	-0.00071065	-0.23197	-0.00016304	-1.2431	-0.00087369	702.8377016453743	60.675	0.55807	61.42	61.16	61.718	0.74503					30	10	4	0	0	0	0.54446	2	22978	22978;23014		27.629	7.3224	1	4331100	+		56630	25224	41233	41562	55296;55297	55296					-0.024101733993120433
TYECARNRTKY	11	Unmodified	_TYECARNRTKY_					0	0	0			REV__ENST00000478923.1_1_X:15768116-15768332:+|nuORF	REV__ENST00000478923.1_1_X:15768116-15768332:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	702.838068	1403.66158	-0.64314	-0.00045202	-0.52169	-0.00036666	-1.1648	-0.00081868	702.837524262974	61.348	0.66339	61.348	60.973	61.636	0	-0.036	-0.00033678	NaN	57.722	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4877500	+		56631	25224	41233	41562							-0.024101733993120433
TYECARNRTKY	11	Unmodified	_TYECARNRTKY_					0	0	0			REV__ENST00000478923.1_1_X:15768116-15768332:+|nuORF	REV__ENST00000478923.1_1_X:15768116-15768332:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	702.838068	1403.66158	-1.0111	-0.00071065	-0.23197	-0.00016304	-1.2431	-0.00087369	702.8377016453743	60.675	0.55807	61.42	61.16	61.718	0.74503	0.036	7.046E-05	NaN	57.722	30	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4331100	+		56632	25224	41233	41562							-0.024101733993120433
TYEDFPTSKYT	11	Unmodified	_TYEDFPTSKYT_					0	0	0		nc|ENSG00000116525|Q9BVG3-2|TRIM62;ENSG00000116525|ENST00000291416|TRIM62	nc|ENSG00000116525|Q9BVG3-2|TRIM62	nc|ENSG00000116525|Q9BVG3-2|TRIM62	MULTI-SECPEP	A375_MHC_IP_R2	2	676.7054443359375	2	676.306258	1350.59796	-1.0854	-0.00073409	0.4374	0.00029581	-0.64805	-0.00043828	676.3065356503197	59.097	0.65791	59.844	59.641	60.299	0.74714					29	12	3	0	0	0	0.90673	1	22376	22376		23.79	8.5413	1	4188300			56633	3403	41234	41563	55298	55298					-0.06331255355416943
TYEFEESFV	9	Unmodified	_TYEFEESFV_					0	0	0			REV__ENSG00000162753|ENST00000367714|SLC9C2	REV__ENSG00000162753|ENST00000367714|SLC9C2	MULTI-MSMS	A375_MHC_IP_R1	1	575.161865234375	2	575.750587	1149.48662	-0.21685	-0.00012485	-0.047184	-2.7166E-05	-0.26403	-0.00015202	576.7555362811404	95.837	0.45362	95.837	95.565	96.018	0					17	8	3	0	0	0	0.63811	1	35199	35199		12.532	0	1	1248600	+		56634	20303	41235	41564	55299	55299					-0.08214269992708978
TYEITYYY	8	Unmodified	_TYEITYYY_					0	0	0		tr|U7SUD1|U7SUD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01109PE=4SV=1	tr|U7SUD1|U7SUD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01109PE=4SV=1	tr|U7SUD1|U7SUD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01109PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	557.5693969726562	2	558.250223	1114.48589	-0.92974	-0.00051903	-2.9929	-0.0016708	-3.9227	-0.0021898	558.2482137391114	34.481	0.50792	35.233	35.057	35.565	0.75225					10	9	2	0	0	0	0.94479	1	12587	12587		19.439	1.304	1	1206200			56635	29759	41236	41565	55300	55300					-0.06677064641758079
TYEKENCGGF	10	Unmodified	_TYEKENCGGF_					0	0	0		ENST00000376681.7_1_17:46840236-46881289:-|nuORF;nc|ENSG00000170703|Q8N841-3|TTLL6;ENSG00000170703|ENST00000393382|TTLL6;nc|ENSG00000170703|Q8N841-2|TTLL6	ENST00000376681.7_1_17:46840236-46881289:-|nuORF	ENST00000376681.7_1_17:46840236-46881289:-|nuORF	MSMS	A375_MHC_IP_R2	2	574.2186279296875	2	574.239864	1146.46517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.012	1	94.756	94.256	95.256	0.74474								0	0	0	0.15105	1	35733	35733		15.847	3.3156	1				56636	7532	41237	41566	55301	55301					-0.10219978293071108
TYEMGRAPDF	10	Unmodified	_TYEMGRAPDF_					0	0	0			REV__ENSG00000033100|ENST00000035307|CHPF2	REV__ENSG00000033100|ENST00000035307|CHPF2	MSMS	A375_MHC_IP_R1	1	396.1649169921875	3	396.178096	1185.51246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.973	1	56.973	56.473	57.473	0								0	0	0	0.15541	1	20423	20423		1.5923	0.81575	1		+		56637	16305	41238	41567	55302	55302					-0.07287699022072047
TYENSAKLVY	10	Unmodified	_TYENSAKLVY_					0	0	0		CDH11|p.G192E|1|0.36|ENSG00000140937|chr16:64992983-64992983|C/T|missense_variant	CDH11|p.G192E|1|0.36|ENSG00000140937|chr16:64992983-64992983|C/T|missense_variant	CDH11|p.G192E|1|0.36|ENSG00000140937|chr16:64992983-64992983|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	594.2130126953125	2	594.300778	1186.587	0.12635	7.5087E-05	-0.87404	-0.00051944	-0.74769	-0.00044435	594.3004464839195	49.198	0.45612	49.198	48.983	49.439	0					12	8	2	0	0	0	0.64716	1	17381	17381		29.082	7.5446	1	2826800			56638	344	41239	41568	55303	55303					0.001173870609363803
TYEPPIRAGF	10	Unmodified	_TYEPPIRAGF_					0	0	0			REV__ENSG00000196353|ENST00000429747|CPNE4	REV__ENSG00000196353|ENST00000429747|CPNE4	MULTI-SECPEP	A375_MHC_IP_R1	1	575.1627807617188	2	575.798206	1149.58186	-0.1747	-0.00010059	-0.06766	-3.8959E-05	-0.24236	-0.00013955	575.7981944364114	93.865	0.40667	93.865	93.584	93.991	0					10	7	2	0	0	0	0.87163	1	34470	34470		19.257	10.512	1	1021200	+		56639	22185	41240	41569	55304	55304					0.013051279890078149
TYFKKVTEFTI	11	Unmodified	_TYFKKVTEFTI_					0	0	0			REV__ENSG00000162669|ENST00000370425|HFM1	REV__ENSG00000162669|ENST00000370425|HFM1	MSMS	A375_MHC_IP_R1	1	459.6502685546875	3	459.586861	1375.73875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.46	1	35.46	34.96	35.96	0								0	0	0	0.16224	1	11794	11794		7.0371	0	1		+		56640	20288	41241	41570	55305	55305					0.06591368088675154
TYFPHFDLSH	10	Unmodified	_TYFPHFDLSH_					0	0	0		CON__P01966;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;ENST00000487791.1_1_16:226802-227261:+|nuORF	CON__P01966;ENSG00000206172|ENST00000320868|HBA1	CON__P01966	MULTI-SECPEP	A375_MHC_IP_R1	1	422.2645263671875	3	421.864617	1262.57202	-0.064377	-2.7158E-05	-0.015888	-6.7027E-06	-0.080265	-3.3861E-05	421.8645427782657	77.022	0.66371	77.022	76.673	77.336	0					28	12	3	0	0	0	0.2729	1	28088	28088		47.732	47.732	1	2485400		+	56641	579;8913	41242	41571	55306	55306					-0.048760600163859635
TYFPHFDLSH	10	Unmodified	_TYFPHFDLSH_					0	0	0		CON__P01966;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;ENST00000487791.1_1_16:226802-227261:+|nuORF	CON__P01966;ENSG00000206172|ENST00000320868|HBA1	CON__P01966	MULTI-MSMS	A375_MHC_IP_R2	2	422.2642822265625	3	421.864617	1262.57202	-0.10666	-4.4996E-05	0.12709	5.3617E-05	0.020435	8.6206E-06	421.86445700458006	76.227	0.7113	76.968	76.64	77.352	0.74052					22	13	2	0	0	0	0.11193	1	28970	28970		61.09	52.114	1	2519000		+	56642	579;8913	41242	41571	55307	55307					-0.048760600163859635
TYFPHFDLSHG	11	Unmodified	_TYFPHFDLSHG_					0	0	0		CON__P01966;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;ENST00000487791.1_1_16:226802-227261:+|nuORF	CON__P01966;ENSG00000206172|ENST00000320868|HBA1	CON__P01966	MULTI-MSMS	A375_MHC_IP_R1	1	661.2034912109375	2	660.80402	1319.59349	-0.54637	-0.00036104	0.21838	0.00014431	-0.32799	-0.00021673	660.8039476116031	76.015	0.35368	76.015	75.764	76.117	0					16	6	3	0	0	0	0.38403	1	27739	27739		40.239	32.084	1	2007700		+	56643	579;8913	41243	41572	55308	55308					-0.0535267498767098
TYFPHFDLSHG	11	Unmodified	_TYFPHFDLSHG_					0	0	0		CON__P01966;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;ENST00000487791.1_1_16:226802-227261:+|nuORF	CON__P01966;ENSG00000206172|ENST00000320868|HBA1	CON__P01966	MULTI-SECPEP	A375_MHC_IP_R1	1	441.2716979980469	3	440.871772	1319.59349	-0.13987	-6.1663E-05	0.13193	5.8164E-05	-0.0079358	-3.4987E-06	440.8718042491982	75.994	1.1119	75.994	75.664	76.776	0					48	21	4	0	0	0	0.78053	1	27663	27663		30.431	23.394	1	9357200		+	56644	579;8913	41243	41572	55309	55309					-0.0535267498767098
TYFPHFDLSHG	11	Unmodified	_TYFPHFDLSHG_					0	0	0		CON__P01966;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;ENST00000487791.1_1_16:226802-227261:+|nuORF	CON__P01966;ENSG00000206172|ENST00000320868|HBA1	CON__P01966	MULTI-MSMS	A375_MHC_IP_R2	2	661.7039794921875	2	660.80402	1319.59349	-0.92519	-0.00061137	-0.58278	-0.0003851	-1.508	-0.00099647	661.3050336023683	75.257	0.40616	75.995	75.772	76.178	0.73751					13	7	2	0	0	0	0.65093	1	28582	28582		19.362	1.2156	1	2491800		+	56645	579;8913	41243	41572	55310	55310					-0.0535267498767098
TYFPHFDLSHG	11	Unmodified	_TYFPHFDLSHG_					0	0	0		CON__P01966;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;ENST00000487791.1_1_16:226802-227261:+|nuORF	CON__P01966;ENSG00000206172|ENST00000320868|HBA1	CON__P01966	MULTI-SECPEP	A375_MHC_IP_R2	2	441.2716369628906	3	440.871772	1319.59349	-0.36966	-0.00016297	-0.046029	-2.0293E-05	-0.41569	-0.00018327	440.8716811973113	75.195	0.81306	75.933	75.671	76.484	0.73752					41	15	4	0	0	0	0.75869	1	28532	28532		31.636	20.118	1	6768900		+	56646	579;8913	41243	41572	55311	55311					-0.0535267498767098
TYFVPGVGTV	10	Unmodified	_TYFVPGVGTV_					0	0	0		GTPBP1|p.S404F|1|0.23|ENSG00000100226|chr22:38726143-38726143|C/T|missense_variant	GTPBP1|p.S404F|1|0.23|ENSG00000100226|chr22:38726143-38726143|C/T|missense_variant	GTPBP1|p.S404F|1|0.23|ENSG00000100226|chr22:38726143-38726143|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	520.639404296875	2	520.276575	1038.5386	-0.56239	-0.0002926	-4.4315	-0.0023056	-4.9939	-0.0025982	520.2756060445514	94.087	0.19988	94.087	93.991	94.191	0					5	3	2	0	0	0	0.87163	1	34576	34576		2.9952	1.6657	1	396440			56647	14096	41244	41573	55312	55312					0.020869382117098212
TYGDCSCY	8	Unmodified	_TYGDCSCY_					0	0	0			REV__nc|ENSG00000140479|P29122-2|PCSK6	REV__nc|ENSG00000140479|P29122-2|PCSK6	MULTI-SECPEP	A375_MHC_IP_R1	1	910.65380859375	1	911.290981	910.283704	-0.17618	-0.00016055	2.2146	0.0020181	2.0384	0.0018576	911.2935826242883	46.42	0.5041	46.42	46.195	46.699	0					11	9	2	0	0	0	0.972	1	16337	16337		10.183	7.8807	1	1657600	+		56648	19217	41245	41574	55313	55313					-0.1750261459047806
TYGEQKISY	9	Unmodified	_TYGEQKISY_					0	0	0		tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	545.1656494140625	2	544.766571	1087.51859	-1.2442	-0.0006778	-0.34003	-0.00018524	-1.5842	-0.00086304	544.7662529050885	25.289	0.35769	25.933	25.77	26.128	0.64368					9	6	2	0	0	0	0.55359	1	8483	8483		28.487	2.2187	1	2427300			56649	29766	41246	41575	55314	55314					-0.021668575189096373
TYGFFATRSGP	11	Unmodified	_TYGFFATRSGP_					0	0	0			REV__nc|ENSG00000137809|Q9UKX5-2|ITGA11	REV__nc|ENSG00000137809|Q9UKX5-2|ITGA11	MSMS	A375_MHC_IP_R2	2	602.134033203125	2	602.293288	1202.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.601	1	72.336	71.836	72.836	0.73421								0	0	0	0.16203	1	27164	27164		8.1555	0	1		+		56650	19034	41247	41576	55315	55315					-0.021160600164193966
TYGQMEEQY	9	Unmodified	_TYGQMEEQY_					0	0	0			REV__tr|U7T8N8|U7T8N8_FUSNUDUF2800domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00115PE=4SV=1	REV__tr|U7T8N8|U7T8N8_FUSNUDUF2800domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00115PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	574.2294921875	2	574.731871	1147.44919	0.015991	9.1907E-06	0.68491	0.00039364	0.7009	0.00040283	574.7323577454715	49.573	1.3752	49.573	49.084	50.459	0					43	26	2	0	0	0	0.71341	1	17866	17866		8.7454	5.7502	1	1868700	+		56651	28889	41248	41577	55316	55316					-0.11863684529953389
TYGQMEEQY	9	Unmodified	_TYGQMEEQY_					0	0	0			REV__tr|U7T8N8|U7T8N8_FUSNUDUF2800domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00115PE=4SV=1	REV__tr|U7T8N8|U7T8N8_FUSNUDUF2800domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00115PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	575.1642456054688	2	574.731871	1147.44919	-0.48223	-0.00027715	0.27236	0.00015653	-0.20987	-0.00012062	574.732068656453	49.583	0.96429	50.341	49.843	50.807	0.75737					23	18	2	0	0	0	0.50702	1	18808	18808		32.305	13.049	1	1337200	+		56652	28889	41248	41577	55317	55317					-0.11863684529953389
TYGTSTTWC	9	Unmodified	_TYGTSTTWC_					0	0	0		ENST00000404155.1_1_6:3177457-3179994:-|nuORF	ENST00000404155.1_1_6:3177457-3179994:-|nuORF	ENST00000404155.1_1_6:3177457-3179994:-|nuORF	MSMS	A375_MHC_IP_R1	1	510.1832580566406	2	510.210575	1018.4066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.08	1	51.08	50.58	51.58	0								0	0	0	0.15486	1	18119	18119		7.9102	0.62092	1				56653	11580	41249	41578	55318	55318					-0.10187034867556122
TYGVPTELLT	10	Unmodified	_TYGVPTELLT_					0	0	0			REV__DOCK7|p.P662L|1|0.18|ENSG00000116641|chr1:62578853-62578853|G/A|missense_variant	REV__DOCK7|p.P662L|1|0.18|ENSG00000116641|chr1:62578853-62578853|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	546.6231079101562	2	547.292422	1092.57029	-0.7921	-0.00043351	0.13767	7.5344E-05	-0.65444	-0.00035817	547.7941518436404	77.241	0.40591	77.984	77.707	78.113	0.74293					12	7	2	0	0	0	0.60238	1	29330	29330		26.268	0	1	1255000	+		56654	16027	41250	41579	55319	55319					0.027708861749943026
TYHLTSAGE	9	Unmodified	_TYHLTSAGE_					0	0	0		ENST00000397876.6_1_16:106379-107140:+|nuORF;ENST00000481947.1_1_16:106326-107140:+|nuORF;ENSG00000161981|ENST00000293861|SNRNP25;nc|ENSG00000161981|Q9BV90|SNRNP25	ENST00000397876.6_1_16:106379-107140:+|nuORF	ENST00000397876.6_1_16:106379-107140:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	979.0221557617188	1	978.452701	977.445425	-0.1751	-0.00017133	-0.50369	-0.00049284	-0.67879	-0.00066416	978.4518713186915	26.296	0.2533	26.296	26.17	26.423	0					6	4	2	0	0	0	0.8028	1	7766	7766		4.3292	4.3292	1	2132100			56655	6499	41251	41580	55320	55320					-0.0441998624153257
TYHYLQVPQ	9	Unmodified	_TYHYLQVPQ_					0	0	0		ENSG00000116544|ENST00000373347|DLGAP3;DLGAP3|p.S464Tfs*4|1|0.2|ENSG00000116544|chr1:34886281-34886281|C/-|frameshift_variant	ENSG00000116544|ENST00000373347|DLGAP3	ENSG00000116544|ENST00000373347|DLGAP3	MULTI-SECPEP	A375_MHC_IP_R2	2	574.2298583984375	2	574.790381	1147.56621	-0.023573	-1.3549E-05	-1.5442	-0.00088757	-1.5677	-0.00090112	575.2903925897044	111.54	0.66914	112.27	111.79	112.46	0.72759					20	12	2	0	0	0	0.71541	1	42121	42121		11.64	5.4345	1	2861100			56656	3404	41252	41581	55321	55321					-0.001671585280519139
TYICTCMYVC	10	Unmodified	_TYICTCMYVC_					0	0	0		ENST00000407010.6_2_7:16128723-16129239:-|nuORF	ENST00000407010.6_2_7:16128723-16129239:-|nuORF	ENST00000407010.6_2_7:16128723-16129239:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	600.633544921875	2	600.233824	1198.45309	-0.28532	-0.00017126	-0.36413	-0.00021856	-0.64945	-0.00038982	600.23365647728	62.711	1.4328	62.711	62.148	63.58	0					39	27	2	0	0	0	0.70329	1	22711	22711		10.824	4.6181	1	1499400			56657	11607	41253	41582	55322	55322					-0.13819377623758555
TYICTCMYVC	10	Unmodified	_TYICTCMYVC_					0	0	0		ENST00000407010.6_2_7:16128723-16129239:-|nuORF	ENST00000407010.6_2_7:16128723-16129239:-|nuORF	ENST00000407010.6_2_7:16128723-16129239:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	600.63330078125	2	600.233824	1198.45309	-0.68217	-0.00040946	-0.67923	-0.0004077	-1.3614	-0.00081716	600.2335085437812	62.244	0.9628	62.986	62.471	63.434	0.74263					30	18	3	0	0	0	0.71866	1	23477	23477		3.9444	0	1	1612800			56658	11607	41253	41582	55323	55323					-0.13819377623758555
TYICTCMYVC	10	Unmodified	_TYICTCMYVC_					0	0	0		ENST00000407010.6_2_7:16128723-16129239:-|nuORF	ENST00000407010.6_2_7:16128723-16129239:-|nuORF	ENST00000407010.6_2_7:16128723-16129239:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	600.233824	1198.45309	-0.68217	-0.00040946	-0.67923	-0.0004077	-1.3614	-0.00081716	600.2335085437812	62.244	0.9628	62.986	62.471	63.434	0.74263	0.13747	-0.00026865	NaN	10.824	30	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1612800			56659	11607	41253	41582							-0.13819377623758555
TYIDENRNF	9	Unmodified	_TYIDENRNF_					0	0	0		ENST00000518921.1_1_8:63055996-63056374:-|nuORF	ENST00000518921.1_1_8:63055996-63056374:-|nuORF	ENST00000518921.1_1_8:63055996-63056374:-|nuORF	MSMS	A375_MHC_IP_R2	2	586.1370849609375	2	586.272552	1170.53055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.319	1	95.063	94.563	95.563	0.74474								0	0	0	0.15486	1	35845	35845		12.532	0	1				56660	12975	41254	41583	55324	55324					-0.047892407756989996
TYIEKDSSVND	11	Unmodified	_TYIEKDSSVND_					0	0	0		tr|U7T2P5|U7T2P5_FUSNUUvrABCsystemproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrBPE=3SV=1	tr|U7T2P5|U7T2P5_FUSNUUvrABCsystemproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrBPE=3SV=1	tr|U7T2P5|U7T2P5_FUSNUUvrABCsystemproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrBPE=3SV=1	MSMS	A375_MHC_IP_R2	2	635.8052368164062	2	635.793514	1269.57248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.607	1	84.346	83.846	84.846	0.73962								0	0	0	0.16213	1	31777	31777		7.609	1.4032	1				56661	29942	41255	41584	55325	55325					-0.05152729877841011
TYIWFFRF	8	Unmodified	_TYIWFFRF_					0	0	0			REV__chr12:131849070-131849939|286|13.81|0.52|4.73|+|2|TE_info:L1MB3,L1MB3_dup12230,L1,LINE,donor,-,131848428,131849070|None,MMP17|3	REV__chr12:131849070-131849939|286|13.81|0.52|4.73|+|2|TE_info:L1MB3,L1MB3_dup12230,L1,LINE,donor,-,131848428,131849070|None,MMP17|3	MULTI-SECPEP	A375_MHC_IP_R2	2	590.7041015625	2	590.302927	1178.5913	-0.36936	-0.00021803	-0.77914	-0.00045993	-1.1485	-0.00067796	590.3027193562172	100.43	0.5117	101.2	100.88	101.39	0.76278					12	9	2	0	0	0	0.972	1	38120	38120		8.5933	0	1	1100400	+		56662	15687	41256	41585	55326	55326					0.009149410651616563
TYKEGYNVY	9	Unmodified	_TYKEGYNVY_					0	0	0		nc|ENSG00000120251|P42262-4|GRIA2;nc|ENSG00000120251|P42262-2|GRIA2;ENSG00000120251|ENST00000264426|GRIA2	nc|ENSG00000120251|P42262-4|GRIA2	nc|ENSG00000120251|P42262-4|GRIA2	MULTI-MSMS	A375_MHC_IP_R1	1	569.165771484375	2	568.766571	1135.51859	-0.56458	-0.00032111	-0.82182	-0.00046743	-1.3864	-0.00078854	568.765999313626	32.747	0.45346	32.747	32.485	32.938	0					11	8	2	0	0	0	0.46038	1	10623	10623		21.747	0	1	4491400			56663	3653	41257	41586	55327	55327					-0.04374857518905628
TYKKIYFTLFL	11	Unmodified	_TYKKIYFTLFL_					0	0	0			REV__ENSG00000167895|ENST00000318430|TMC8	REV__ENSG00000167895|ENST00000318430|TMC8	MULTI-MSMS	A375_MHC_IP_R1	1	479.656982421875	3	479.611118	1435.81152	-0.68156	-0.00032688	0.062781	3.011E-05	-0.61878	-0.00029677	479.94536259816215	132.96	1.53	132.96	132.59	134.12	0					74	29	4	0	0	0	0.73809	2	51226	51226;51229		0.40827	0	1	20628000	+		56664	20803	41258	41587	55328;55329	55328					0.1110512188206485
TYKKIYFTLFL	11	Unmodified	_TYKKIYFTLFL_					0	0	0			REV__ENSG00000167895|ENST00000318430|TMC8	REV__ENSG00000167895|ENST00000318430|TMC8	MULTI-SECPEP	A375_MHC_IP_R1	1	480.3450012207031	3	479.611118	1435.81152	-0.68156	-0.00032688	0.062781	3.011E-05	-0.61878	-0.00029677	479.94536259816215	132.96	1.53	132.96	132.59	134.12	0					74	29	4	0	0	0	0.99738	1	51277	51277		2.4348	1.325	1	20628000	+		56665	20803	41258	41587	55330	55330					0.1110512188206485
TYKKIYFTLFL	11	Unmodified	_TYKKIYFTLFL_					0	0	0			REV__ENSG00000167895|ENST00000318430|TMC8	REV__ENSG00000167895|ENST00000318430|TMC8	MULTI-SECPEP	A375_MHC_IP_R1	1	719.3123779296875	2	718.913039	1435.81152	-0.81496	-0.00058588	-0.53303	-0.0003832	-1.348	-0.00096908	719.4137580857797	132	1.0096	132	131.53	132.54	0					51	19	3	0	0	0	0.99738	1	51029	51029		5.2969	2.3016	1	7851200	+		56666	20803	41258	41587	55331	55331					0.1110512188206485
TYKKIYFTLFL	11	Unmodified	_TYKKIYFTLFL_					0	0	0			REV__ENSG00000167895|ENST00000318430|TMC8	REV__ENSG00000167895|ENST00000318430|TMC8	MULTI-MSMS	A375_MHC_IP_R2	2	480.6952209472656	3	479.611118	1435.81152	-0.49606	-0.00023792	-0.18086	-8.6743E-05	-0.67692	-0.00032466	479.61084513620256	132.87	1.2183	133.03	132.59	133.8	0.16487					70	23	4	0	0	0	0.73809	1	52228	52228		0.40827	0	1	17820000	+		56667	20803	41258	41587	55332	55332					0.1110512188206485
TYKKTNKEKF	10	Unmodified	_TYKKTNKEKF_					0	0	0		ENSG00000159256|ENST00000400485|MORC3	ENSG00000159256|ENST00000400485|MORC3	ENSG00000159256|ENST00000400485|MORC3	MULTI-MSMS	A375_MHC_IP_R1	1	644.2593383789062	2	643.858795	1285.70304	-0.46782	-0.00030121	0.82163	0.00052901	0.35381	0.00022781	644.3602293286871	77.541	0.55861	77.541	77.235	77.793	0					19	10	3	0	0	0	0.66308	1	28310	28310		16.149	1.7437	1	2053700			56668	6361	41259	41588	55333	55333					0.07161330631652163
TYKKTNKEKF	10	Unmodified	_TYKKTNKEKF_					0	0	0		ENSG00000159256|ENST00000400485|MORC3	ENSG00000159256|ENST00000400485|MORC3	ENSG00000159256|ENST00000400485|MORC3	MULTI-SECPEP	A375_MHC_IP_R2	2	644.258544921875	2	643.858795	1285.70304	-0.70098	-0.00045133	0.23744	0.00015288	-0.46354	-0.00029845	643.8590105903023	76.686	0.45624	77.426	77.199	77.655	0.74052					15	8	2	0	0	0	0.92199	1	29143	29143		17.113	0	1	1929600			56669	6361	41259	41588	55334	55334					0.07161330631652163
TYKPKGKWY	9	Unmodified	_TYKPKGKWY_					0	0	0		nc|ENSG00000168556|Q9H160-2|ING2;ENSG00000168556|ENST00000302327|ING2	nc|ENSG00000168556|Q9H160-2|ING2	nc|ENSG00000168556|Q9H160-2|ING2	MULTI-SECPEP	A375_MHC_IP_R2	2	391.2631530761719	3	390.88172	1169.62333	-0.62114	-0.00024279	-1.8702	-0.00073101	-2.4913	-0.0009738	391.21563922900447	25.394	0.81304	26.038	25.924	26.737	0.64368					18	15	2	0	0	0	0.77948	1	8731	8731		10.151	1.995	1	3000900			56670	7319	41260	41589	55335	55335					0.04530308748326206
TYKSIQMMRQY	11	Unmodified	_TYKSIQMMRQY_					0	0	0		ENSG00000057149|ENST00000283752|SERPINB3	ENSG00000057149|ENST00000283752|SERPINB3	ENSG00000057149|ENST00000283752|SERPINB3	MSMS	A375_MHC_IP_R2	2	483.47198486328125	3	483.57234	1447.69519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.596	1	43.369	42.869	43.869	0.7724								0	0	0	0.16286	1	15851	15851		3.8459	1.2147	1				56671	1281	41261	41590	55336	55336					-0.010748879517677778
TYLDGYDRE	9	Unmodified	_TYLDGYDRE_					0	0	0		nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B;ENST00000486769.1_1_9:100760930-100767440:+|nuORF	nc|ENSG00000136938|Q92688-2|ANP32B	nc|ENSG00000136938|Q92688-2|ANP32B	MULTI-SECPEP	A375_MHC_IP_R2	2	565.6263427734375	2	566.251286	1130.48802	-0.8592	-0.00048652	0.58795	0.00033293	-0.27125	-0.0001536	566.251499469348	33.481	0.30419	34.233	34.146	34.45	0.75225					6	5	2	0	0	0	0.67483	1	12087	12087		14.838	5.4551	1	949320			56672	4845	41262	41591	55337	55337					-0.07200635903927832
TYLPAGQSV	9	Unmodified	_TYLPAGQSV_					0	0	0		nc|ENSG00000167085|P35232-2|PHB1;ENSG00000167085|ENST00000300408|PHB1	nc|ENSG00000167085|P35232-2|PHB1	nc|ENSG00000167085|P35232-2|PHB1	MULTI-MSMS	A375_MHC_IP_R1	1	468.6452331542969	2	468.245275	934.475997	-0.29742	-0.00013926	-0.094302	-4.4157E-05	-0.39172	-0.00018342	468.24515159022076	57.487	0.71286	57.487	57.211	57.923	0					28	13	3	0	0	0	0.054426	1	20641	20641		62.573	26.528	1	2467000			56673	7153	41263	41592	55338	55338					0.006137921435311
TYLPAGQSV	9	Unmodified	_TYLPAGQSV_					0	0	0		nc|ENSG00000167085|P35232-2|PHB1;ENSG00000167085|ENST00000300408|PHB1	nc|ENSG00000167085|P35232-2|PHB1	nc|ENSG00000167085|P35232-2|PHB1	MULTI-MSMS	A375_MHC_IP_R2	2	468.6445617675781	2	468.245275	934.475997	-1.0608	-0.00049674	-0.28352	-0.00013275	-1.3444	-0.00062949	468.2449809314248	56.772	0.76602	57.522	57.203	57.969	0.75015					27	14	3	0	0	0	0.017727	1	21471	21471		86.332	34.063	1	3642400			56674	7153	41263	41592	55339	55339					0.006137921435311
TYLSFILY	8	Unmodified	_TYLSFILY_					0	0	0			REV__ENST00000512410.1_1_4:175416602-175443578:-|nuORF	REV__ENST00000512410.1_1_4:175416602-175443578:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1019.4251708984375	1	1019.54481	1018.53753	-0.092232	-9.4034E-05	-1.1396	-0.0011619	-1.2319	-0.0012559	1019.5436869661319	97.546	0.66145	98.302	98.077	98.739	0.75586					21	12	2	0	0	0	0.77651	1	37141	37141		42.095	0	1	3590600	+		56675	25625	41264	41593	55340	55340					0.029007238427993798
TYLSFILY	8	Unmodified	_TYLSFILY_					0	0	0			REV__ENST00000512410.1_1_4:175416602-175443578:-|nuORF	REV__ENST00000512410.1_1_4:175416602-175443578:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	1019.54481	1018.53753	0.21681	0.00022104	-1.2803	-0.0013053	-1.0634	-0.0010842	1019.5437572560098	98.36	1.0165	98.36	98.05	99.067	0	0.028995	-9.5458E-05	NaN	42.095	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3871700	+		56676	25625	41264	41593							0.029007238427993798
TYLSIIHSL	9	Unmodified	_TYLSIIHSL_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-SECPEP	A375_MHC_IP_R2	2	524.1851196289062	2	523.797675	1045.5808	-0.46451	-0.00024331	-0.57889	-0.00030322	-1.0434	-0.00054653	523.7973276032005	92.628	0.60646	93.367	93.19	93.797	0.73901					14	11	2	0	0	0	0.50702	1	35326	35326		25.399	4.9457	1	1373200			56677	4476	41265	41594	55341	55341					0.05982913620096042
TYMDQAPS	8	Unmodified	_TYMDQAPS_					0	0	0		ENSG00000173757|ENST00000293328|STAT5B;nc|ENSG00000126561|P42229-2|STAT5A;ENST00000498674.1_1_17:40354356-40354872:-|nuORF;ENSG00000126561|ENST00000590949|STAT5A	ENSG00000173757|ENST00000293328|STAT5B;ENSG00000126561|ENST00000590949|STAT5A	ENSG00000126561|ENST00000590949|STAT5A	MULTI-SECPEP	A375_MHC_IP_R1	1	912.5844116210938	1	912.376759	911.369483	0.078216	7.1362E-05	1.4605	0.0013325	1.5387	0.0014038	912.3795160420588	117.4	3.6524	117.4	114.67	118.32	0					107	71	3	0	0	0	0.97144	1	42808	42808		0.6015	0.14316	1	39593000			56678	7827;4049	41266	41595	55342	55342					-0.08974706413300737
TYNGPLNECT	10	Unmodified	_TYNGPLNECT_					0	0	0			REV__nc|ENSG00000134376|P82279-2|CRB1	REV__nc|ENSG00000134376|P82279-2|CRB1	MSMS	A375_MHC_IP_R2	2	556.1713256835938	2	556.239864	1110.46517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.125	1	30.844	30.344	31.344	0.71857								0	0	0	0.15089	1	10570	10570		16.149	0.30192	1		+		56679	27234	41267	41596	55343	55343					-0.0856397829306843
TYNMLCFGIY	10	Unmodified	_TYNMLCFGIY_					0	0	0		nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-MSMS	A375_MHC_IP_R1	1	613.174560546875	2	612.775028	1223.5355	-0.54141	-0.00033177	-0.91704	-0.00056194	-1.4584	-0.0008937	612.7745980961906	66.493	0.50977	66.493	66.275	66.785	0					19	9	3	0	0	0	0.55789	1	24072	24072		24.021	0	1	2344600			56680	6175	41268	41597	55344	55344					-0.06732396228949256
TYNVDKHVPD	10	Unmodified	_TYNVDKHVPD_					0	0	0		ENSG00000163283|ENST00000392027|ALPP	ENSG00000163283|ENST00000392027|ALPP	ENSG00000163283|ENST00000392027|ALPP	MULTI-SECPEP	A375_MHC_IP_R2	2	396.26531982421875	3	396.527894	1186.56185	-0.3754	-0.00014886	-0.0039604	-1.5704E-06	-0.37936	-0.00015043	396.5278776562317	24.064	0.51049	24.708	24.499	25.009	0.64368					14	9	2	0	0	0	0.70528	1	7780	7780		17.863	11.233	1	2906900			56681	6642	41269	41598	55345	55345					-0.023966677416183302
TYPDPVRVV	9	Unmodified	_TYPDPVRVV_					0	0	0		nc|ENSG00000090861|P49588-2|AARS1;ENSG00000090861|ENST00000261772|AARS1;ENST00000569825.1_1_16:70287541-70292096:-|nuORF	nc|ENSG00000090861|P49588-2|AARS1	nc|ENSG00000090861|P49588-2|AARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	523.6869506835938	2	523.287474	1044.5604	-0.89634	-0.00046905	-0.0032057	-1.6775E-06	-0.89955	-0.00047072	523.2874157043408	58.684	1.0692	59.432	58.928	59.998	0.74828					45	20	3	0	0	0	0.71071	1	22139	22139		19.362	13.63	1	6281100			56682	14498	41270	41599	55346	55346					0.03989742960266085
TYPEVVRMV	9	Unmodified	_TYPEVVRMV_					0	0	0		nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E	nc|ENSG00000154001|Q16537-3|PPP2R5E	nc|ENSG00000154001|Q16537-3|PPP2R5E	MULTI-MSMS	A375_MHC_IP_R1	1	547.6889038085938	2	547.289159	1092.56377	-0.45335	-0.00024811	0.2517	0.00013775	-0.20165	-0.00011036	547.2892517163764	70.622	1.1767	70.622	70.034	71.211	0					33	22	2	0	0	0	0.50355	1	25586	25586		26.268	8.1218	1	1993900			56683	6053	41271	41600	55347	55347					0.021186697426401224
TYPEVVRMV	9	Unmodified	_TYPEVVRMV_					0	0	0		nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E	nc|ENSG00000154001|Q16537-3|PPP2R5E	nc|ENSG00000154001|Q16537-3|PPP2R5E	MULTI-SECPEP	A375_MHC_IP_R2	2	547.6887817382812	2	547.289159	1092.56377	-0.71242	-0.0003899	0.22739	0.00012445	-0.48503	-0.00026545	547.2893386151247	69.821	0.76305	70.555	70.183	70.946	0.73421					34	14	3	0	0	0	0.69179	1	26424	26424		22.736	3.4793	1	3134600			56684	6053	41271	41600	55348	55348					0.021186697426401224
TYQIEFSDF	9	Unmodified	_TYQIEFSDF_					0	0	0			REV__nc|ENSG00000168477|P22105-1|TNXB	REV__nc|ENSG00000168477|P22105-1|TNXB	MULTI-MSMS	A375_MHC_IP_R2	2	575.70654296875	2	575.258579	1148.50261	-0.11352	-6.5306E-05	0.1241	7.1389E-05	0.010575	6.0831E-06	575.2586981896619	92.173	1.9239	92.912	92.483	94.407	0.73902					93	37	4	0	0	0	0.46038	1	35496	35496		21.747	6.9084	1	43945000	+		56685	20858	41272	41601	55349	55349					-0.06570563755826697
TYQSSYSTF	9	Unmodified	_TYQSSYSTF_					0	0	0		nc|ENSG00000211798|A0A075B6X5|TRAV18	nc|ENSG00000211798|A0A075B6X5|TRAV18	nc|ENSG00000211798|A0A075B6X5|TRAV18	MULTI-MSMS	A375_MHC_IP_R2	2	542.7070922851562	2	542.235104	1082.45566	-0.975	-0.00052868	0.40021	0.00021701	-0.57479	-0.00031167	542.2356619728873	97.448	0.61061	98.204	97.974	98.585	0.75586					16	11	2	0	0	0	0.63811	1	37045	37045		12.532	2.3482	1	1270800			56686	14882	41273	41602	55350	55350					-0.08227423306948367
TYRFFPNK	8	Unmodified	_TYRFFPNK_					0	0	0			REV__ENST00000592516.1_1_19:11031365-11031741:+|nuORF	REV__ENST00000592516.1_1_19:11031365-11031741:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	536.7109375	2	536.782359	1071.55016	-0.86476	-0.00046419	-0.51205	-0.00027486	-1.3768	-0.00073905	536.7820162847086	24.461	0.86054	24.461	23.94	24.801	0					26	16	2	0	0	0	0.73946	1	6750	6750		23.148	3.7094	1	4792600	+		56687	19308	41274	41603	55351	55351					0.017251800257099603
TYRGHSIEY	9	Unmodified	_TYRGHSIEY_					0	0	0			REV__nc|ENSG00000107736|Q9H251-4|CDH23	REV__nc|ENSG00000107736|Q9H251-4|CDH23	MSMS	A375_MHC_IP_R1	1	563.1664428710938	2	563.269813	1124.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.885	1	62.885	62.385	63.385	0								0	0	0	0.15411	1	22720	22720		14.838	0	1		+		56688	17494	41275	41604	55352	55352					-0.03220919567525016
TYRGPKAF	8	Unmodified	_TYRGPKAF_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	A375_MHC_IP_R2	2	470.656494140625	2	470.255977	938.497401	-0.95988	-0.00045139	1.3509	0.00063525	0.39098	0.00018386	470.2569886929924	34.14	0.30527	34.892	34.803	35.108	0.75225					7	5	2	0	0	0	0.2858	1	12312	12312		60.074	6.4983	1	7204900			56689	8493	41276	41605	55353	55353					0.02569221962892243
TYRGSMDP	8	Unmodified	_TYRGSMDP_					0	0	0			REV__nc|ENSG00000128591|Q14315-2|FLNC	REV__nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	A375_MHC_IP_R1	1	464.6846923828125	2	463.70546	925.396366	-0.076191	-3.533E-05	0.45847	0.00021259	0.38227	0.00017726	463.70563676288015	71.325	0.61198	71.325	70.953	71.565	0					22	11	3	0	0	0	0.77515	2	25890	25890;25928		12.532	2.1497	1	3603600	+		56690	18456	41277	41606	55354;55355	55354					-0.06931597802122269
TYRGSMDP	8	Unmodified	_TYRGSMDP_					0	0	0			REV__nc|ENSG00000128591|Q14315-2|FLNC	REV__nc|ENSG00000128591|Q14315-2|FLNC	MULTI-SECPEP	A375_MHC_IP_R1	1	464.1055603027344	2	463.70546	925.396366	-0.076191	-3.533E-05	0.45847	0.00021259	0.38227	0.00017726	463.70563676288015	71.325	0.61198	71.325	70.953	71.565	0					22	11	3	0	0	0	0.93661	1	25904	25904		15.847	3.3156	1	3603600	+		56691	18456	41277	41606	55356	55356					-0.06931597802122269
TYRKLALKH	9	Unmodified	_TYRKLALKH_					0	0	0		ENSG00000147570|ENST00000276570|DNAJC5B	ENSG00000147570|ENST00000276570|DNAJC5B	ENSG00000147570|ENST00000276570|DNAJC5B	MULTI-MSMS	A375_MHC_IP_R2	2	377.2852783203125	3	377.232864	1128.67676	0.12607	4.7558E-05	-0.33687	-0.00012708	-0.2108	-7.9522E-05	377.5670306237208	32.706	0.35465	33.443	33.265	33.62	0.73692					10	6	2	0	0	0	0.54799	1	11606	11606		17.443	6.6431	1	2535700			56692	5692	41278	41607	55357	55357					0.1175710625082047
TYRPFGASAF	10	Unmodified	_TYRPFGASAF_					0	0	0			REV__ENST00000559443.1_1_15:58430764-58438974:+|nuORF	REV__ENST00000559443.1_1_15:58430764-58438974:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	559.1773681640625	2	558.777274	1115.53999	-0.45609	-0.00025485	0.13577	7.5863E-05	-0.32033	-0.00017899	558.7773693558444	34.929	0.51019	34.929	34.708	35.218	0					13	9	2	0	0	0	0.6774	1	11586	11586		34.402	13.948	1	3914300	+		56693	26155	41279	41608	55358	55358					-0.013154276995237524
TYRPFGASAF	10	Unmodified	_TYRPFGASAF_					0	0	0			REV__ENST00000559443.1_1_15:58430764-58438974:+|nuORF	REV__ENST00000559443.1_1_15:58430764-58438974:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	558.777274	1115.53999	-1.0479	-0.00058553	-0.39895	-0.00022292	-1.4468	-0.00080845	558.7770962472315	34.188	0.40847	34.94	34.803	35.211	0.75225	0.0055199	-0.00048407	NaN	34.402	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4663800	+		56694	26155	41279	41608							-0.013154276995237524
TYSALQLEY	9	Unmodified	_TYSALQLEY_					0	0	0			REV__nc|ENSG00000096696|P15924-2|DSP	REV__nc|ENSG00000096696|P15924-2|DSP	MULTI-SECPEP	A375_MHC_IP_R2	2	544.6686401367188	2	544.268947	1086.52334	-0.93258	-0.00050757	0.06815	3.7092E-05	-0.86443	-0.00047048	544.2690166448898	55.176	0.56019	55.927	55.626	56.187	0.75075					21	10	3	0	0	0	0.46121	1	20815	20815		49.933	6.1606	1	4756500	+		56695	17008	41280	41609	55359	55359					-0.01645973376139409
TYSLPLFVF	9	Unmodified	_TYSLPLFVF_					0	0	0		ENST00000465230.5_1_2:220471080-220471347:+|nuORF	ENST00000465230.5_1_2:220471080-220471347:+|nuORF	ENST00000465230.5_1_2:220471080-220471347:+|nuORF	MSMS	A375_MHC_IP_R2	2	543.70068359375	2	543.797143	1085.57973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.51	1	106.27	105.77	106.77	0.75977								0	0	0	0.15486	1	39905	39905		9.3474	0.60203	1				56696	12238	41281	41610	55360	55360					0.04036699251173559
TYSRGPASDY	10	Unmodified	_TYSRGPASDY_					0	0	0		nc|ENSG00000183853|Q96J84-3|KIRREL1;ENSG00000183853|ENST00000359209|KIRREL1;nc|ENSG00000183853|Q96J84-2|KIRREL1	nc|ENSG00000183853|Q96J84-3|KIRREL1	nc|ENSG00000183853|Q96J84-3|KIRREL1	MULTI-MSMS	A375_MHC_IP_R1	1	559.1512451171875	2	558.751453	1115.48835	-0.74729	-0.00041755	0.29252	0.00016345	-0.45477	-0.0002541	558.7515748282739	26.93	0.45067	26.93	26.728	27.179	0					13	8	2	0	0	0	0.70793	1	8111	8111		8.7454	0	1	3743200			56697	8537	41282	41611	55361	55361					-0.0647721618408923
TYSRGPASDY	10	Unmodified	_TYSRGPASDY_					0	0	0		nc|ENSG00000183853|Q96J84-3|KIRREL1;ENSG00000183853|ENST00000359209|KIRREL1;nc|ENSG00000183853|Q96J84-2|KIRREL1	nc|ENSG00000183853|Q96J84-3|KIRREL1	nc|ENSG00000183853|Q96J84-3|KIRREL1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	558.751453	1115.48835	-0.74729	-0.00041755	0.29252	0.00016345	-0.45477	-0.0002541	558.7515748282739	26.93	0.45067	26.93	26.728	27.179	0	0	0	NaN	8.7454	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3743200			56698	8537	41282	41611							-0.0647721618408923
TYSSEIYY	8	Unmodified	_TYSSEIYY_					0	0	0			REV__ENSG00000260314|ENST00000569591|MRC1	REV__ENSG00000260314|ENST00000569591|MRC1	MULTI-MSMS	A375_MHC_IP_R2	2	514.2003784179688	2	513.226748	1024.43894	-0.8377	-0.00042993	0.77713	0.00039885	-0.060562	-3.1082E-05	513.2271076115844	32.913	0.40769	33.65	33.468	33.876	0.73691					14	7	3	0	0	0	0.77123	1	11753	11753		14.582	2.341	1	5996100	+		56699	22907	41283	41612	55362	55362					-0.07229924192893122
TYSSQIRKL	9	Unmodified	_TYSSQIRKL_					0	0	0		ENST00000469130.5_1_1:201751782-201763782:+|nuORF;nc|ENSG00000134369|Q8NEY1-6|NAV1;nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1	ENST00000469130.5_1_1:201751782-201763782:+|nuORF	ENST00000469130.5_1_1:201751782-201763782:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	366.2767028808594	3	365.876746	1094.60841	-0.076173	-2.787E-05	0.1533	5.6089E-05	0.077126	2.8219E-05	365.8767460054452	26.058	0.60746	26.058	25.866	26.474	0					29	11	3	0	0	0	0.2989	1	7713	7713		30.703	17.089	1	15918000			56700	12312	41284	41613	55363	55363					0.06488816880346349
TYSSQIRKL	9	Unmodified	_TYSSQIRKL_					0	0	0		ENST00000469130.5_1_1:201751782-201763782:+|nuORF;nc|ENSG00000134369|Q8NEY1-6|NAV1;nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1	ENST00000469130.5_1_1:201751782-201763782:+|nuORF	ENST00000469130.5_1_1:201751782-201763782:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	366.27667236328125	3	365.876746	1094.60841	-0.37621	-0.00013765	0.2476	9.0593E-05	-0.12861	-4.7054E-05	365.87685855912713	25.426	0.81498	26.07	25.668	26.483	0.64368					34	15	3	0	0	0	0.095851	1	8502	8502		51.415	33.042	1	19788000			56701	12312	41284	41613	55364	55364					0.06488816880346349
TYSSQIRKL	9	Unmodified	_TYSSQIRKL_					0	0	0		ENST00000469130.5_1_1:201751782-201763782:+|nuORF;nc|ENSG00000134369|Q8NEY1-6|NAV1;nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1	ENST00000469130.5_1_1:201751782-201763782:+|nuORF	ENST00000469130.5_1_1:201751782-201763782:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	548.7109985351562	2	548.31148	1094.60841	-1.2312	-0.00067509	0.14804	8.117E-05	-1.0832	-0.00059392	548.3115182866775	25.426	0.45739	26.069	25.873	26.33	0.64368					21	8	3	0	0	0	0.33896	1	8522	8522		47.594	23.574	1	5976700			56702	12312	41284	41613	55365	55365					0.06488816880346349
TYTEQSHEE	9	Unmodified	_TYTEQSHEE_					0	0	0		nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8;ENST00000550865.1_1_12:76784181-76788455:-|nuORF	nc|ENSG00000091039|Q9BZF1-3|OSBPL8	nc|ENSG00000091039|Q9BZF1-3|OSBPL8	MSMS	A375_MHC_IP_R1	1	562.2320556640625	2	562.23055	1122.44655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.08	1	120.08	119.58	120.58	0								0	0	0	0.15486	1	44457	44457		12.532	2.3482	1				56703	1968	41285	41614	55366	55366					-0.10977816663285012
TYTFLKETF	9	Unmodified	_TYTFLKETF_					0	0	0		ENSG00000164989|ENST00000380701|CCDC171;nc|ENSG00000164989|Q6TFL3-4|CCDC171;ENST00000470191.5_1_9:15845666-15971831:+|nuORF	ENSG00000164989|ENST00000380701|CCDC171	ENSG00000164989|ENST00000380701|CCDC171	MULTI-SECPEP	A375_MHC_IP_R1	1	575.69384765625	2	575.294965	1148.57538	-0.11733	-6.7502E-05	-0.51075	-0.00029383	-0.62808	-0.00036133	575.2951572277738	44.036	0.71583	44.036	43.859	44.575	0					21	13	3	0	0	0	0.65246	1	15360	15360		21.747	0	1	2122300			56704	6903	41286	41615	55367	55367					0.007031900375977784
TYTLQDGPWSQ	11	Unmodified	_TYTLQDGPWSQ_					0	0	0		ENSG00000121270|ENST00000356608|ABCC11;nc|ENSG00000121270|Q96J66-2|ABCC11;ENST00000567385.5_1_16:48244807-48265838:-|nuORF	ENSG00000121270|ENST00000356608|ABCC11	ENSG00000121270|ENST00000356608|ABCC11	MULTI-MSMS	A375_MHC_IP_R2	2	648.6981811523438	2	648.298767	1294.58298	-0.65192	-0.00042264	-0.050607	-3.2809E-05	-0.70253	-0.00045545	648.2986468555276	67.577	0.45906	68.313	68.052	68.511	0.73631					16	8	2	0	0	0	0.72869	1	25582	25582		10.151	0.76745	1	2908300			56705	3713	41287	41616	55368	55368					-0.05252702432744627
TYTMMGSE	8	Unmodified	_TYTMMGSE_					0	0	0		nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE;CENPE|p.D1988Mfs*4|1|0.29|ENSG00000138778|chr4:103140032-103140032|T/-|frameshift_variant	nc|ENSG00000138778|Q02224-3|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	MULTI-SECPEP	A375_MHC_IP_R2	2	459.6279296875	2	460.180429	918.346305	-0.4526	-0.00020828	-0.16611	-7.6441E-05	-0.61871	-0.00028472	460.18029295895104	62.666	0.45419	63.408	63.18	63.634	0.74263					14	8	2	0	0	0	0.972	1	23825	23825		5.2307	5.2307	1	1865100			56706	5032	41288	41617	55369	55369					-0.11613468522273251
TYTSARTLL	9	Unmodified	_TYTSARTLL_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MULTI-SECPEP	A375_MHC_IP_R1	1	513.684814453125	2	513.284931	1024.55531	-0.054565	-2.8008E-05	-0.43242	-0.00022196	-0.48699	-0.00024996	513.2846870976714	48.68	0.65785	48.68	48.426	49.084	0					29	12	3	0	0	0	0.11887	1	17161	17161		63.227	15.479	1	6397900			56707	7084	41289	41618	55370	55370					0.04401439097682669
TYTSARTLL	9	Unmodified	_TYTSARTLL_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MULTI-SECPEP	A375_MHC_IP_R2	2	513.1735229492188	2	513.284931	1024.55531	-0.63189	-0.00032434	-0.065766	-3.3757E-05	-0.69766	-0.0003581	513.2848345699099	47.774	0.60718	48.535	48.275	48.883	0.76128					26	11	3	0	0	0	0.23894	1	17912	17912		47.594	7.6447	1	5332700			56708	7084	41289	41618	55371	55371					0.04401439097682669
TYTTRYFE	8	Unmodified	_TYTTRYFE_					0	0	0			REV__ENPEP|p.G202E|1|0.39|ENSG00000138792|chr4:110477019-110477019|G/A|missense_variant	REV__ENPEP|p.G202E|1|0.39|ENSG00000138792|chr4:110477019-110477019|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	541.1710815429688	2	540.753464	1079.49238	-0.97355	-0.00052645	-0.20035	-0.00010834	-1.1739	-0.00063479	540.7534269755813	65.427	0.40714	66.165	65.968	66.375	0.73811					13	7	2	0	0	0	0.92636	1	24873	24873		16.942	0	1	880430	+		56709	16077	41290	41619	55372	55372					-0.044191266903681026
TYVFDGASSY	10	Unmodified	_TYVFDGASSY_					0	0	0			REV__GCA|p.S53F|2|0.3|ENSG00000115271|chr2:162347708-162347708|C/T|missense_variant	REV__GCA|p.S53F|2|0.3|ENSG00000115271|chr2:162347708-162347708|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	555.1793823242188	2	555.242929	1108.47131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.236	1	42.01	41.51	42.51	0.77451								0	0	0	0.15308	1	15293	15293		10.824	0	1		+		56710	26670	41291	41620	55373	55373					-0.07859136789898002
TYVFRVRAV	9	Unmodified	_TYVFRVRAV_					0	0	0		ENSG00000036448|ENST00000262113|MYOM2	ENSG00000036448|ENST00000262113|MYOM2	ENSG00000036448|ENST00000262113|MYOM2	MULTI-MSMS	A375_MHC_IP_R1	1	555.9300537109375	2	555.824558	1109.63456	-0.60554	-0.00033657	3.0469	0.0016936	2.4414	0.001357	556.3264457773379	52.456	0.45675	52.456	52.237	52.694	0					13	8	2	0	0	0	0.60101	1	18714	18714		14.838	1.7958	1	2013100			56711	1137	41292	41621	55374	55374					0.08413130842473038
TYWFLFRK	8	Unmodified	_TYWFLFRK_					0	0	0		ENSG00000127948|ENST00000461988|POR;POR|p.I444Sfs*101|1|0.39|ENSG00000127948|chr7:75985133-75985133|C/-|frameshift_variant;ENST00000471238.5_1_7:75583310-75608939:+|nuORF	ENSG00000127948|ENST00000461988|POR	ENSG00000127948|ENST00000461988|POR	MULTI-MSMS	A375_MHC_IP_R2	2	387.9437255859375	3	387.54656	1159.61785	-0.36429	-0.00014118	-3.9363	-0.0015255	-4.3006	-0.0016667	387.5446911975527	54.422	0.40364	55.172	54.967	55.37	0.75075					12	7	2	0	0	0	0.7769	1	20561	20561		6.2058	2.8861	1	1248400			56712	4112	41293	41622	55375	55375					0.0444262995652025
TYWFSMHFHYF	11	Unmodified	_TYWFSMHFHYF_					0	0	0		ENST00000523301.1_1_5:158533944-158534133:+|nuORF	ENST00000523301.1_1_5:158533944-158534133:+|nuORF	ENST00000523301.1_1_5:158533944-158534133:+|nuORF	MSMS	A375_MHC_IP_R2	2	522.4566650390625	3	522.56054	1564.65979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.622	1	90.354	89.854	90.854	0.7318								0	0	0	0.16351	1	34103	34103		0.45452	0.35968	1				56713	13040	41294	41623	55376	55376					-0.09995182417264914
TYWRVYTWLE	10	Unmodified	_TYWRVYTWLE_					0	0	0			REV__ENST00000482889.1_1_1:109472820-109486481:-|nuORF	REV__ENST00000482889.1_1_1:109472820-109486481:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	473.3026123046875	3	472.903072	1415.68739	-0.68822	-0.00032546	-0.63851	-0.00030195	-1.3267	-0.00062741	472.9027986043524	26.952	0.75587	26.952	26.524	27.28	0					37	14	3	0	0	0	0.93407	1	8103	8103		7.0371	5.8223	1	4017000	+		56714	18180	41295	41624	55377	55377					-0.003829558853794879
TYYCARDTVR	10	Unmodified	_TYYCARDTVR_					0	0	0		CON__ENSEMBL:ENSBTAP00000011227	CON__ENSEMBL:ENSBTAP00000011227	CON__ENSEMBL:ENSBTAP00000011227	MSMS	A375_MHC_IP_R2	2	416.43072509765625	3	416.532762	1246.57646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.621	1	37.392	36.892	37.892	0.7709								0	0	0	0.15554	1	13361	13361		2.8433	0.10809	1			+	56715	568	41296	41625	55378	55378					-0.03696918865148291
TYYHPGILKK	10	Unmodified	_TYYHPGILKK_					0	0	0			REV__ENSG00000013293|ENST00000231706|SLC7A14	REV__ENSG00000013293|ENST00000231706|SLC7A14	MULTI-SECPEP	A375_MHC_IP_R2	2	610.6795654296875	2	610.345323	1218.67609	-0.40245	-0.00024564	-2.8871	-0.0017621	-3.2896	-0.0020078	610.8444357323573	92.376	0.45461	93.115	92.937	93.392	0.73902					10	8	2	0	0	0	0.85226	1	35226	35226		10.074	0	1	1632800	+		56716	16229	41297	41626	55379	55379					0.07550266811108486
TYYIPFWFFCF	11	Unmodified	_TYYIPFWFFCF_					0	0	0		NEU3|p.S218F|1|0.16|ENSG00000162139|chr11:75005759-75005759|C/T|missense_variant	NEU3|p.S218F|1|0.16|ENSG00000162139|chr11:75005759-75005759|C/T|missense_variant	NEU3|p.S218F|1|0.16|ENSG00000162139|chr11:75005759-75005759|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	767.3491821289062	2	767.349217	1532.68388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.679	1	19.282	18.782	19.782	0.60308								0	0	0	0.1636	1	5568	5568		0	0	1				56717	14989	41298	41627	55380	55380					-0.06115341983604594
TYYMIDMAS	9	Unmodified	_TYYMIDMAS_					0	0	0			REV__DDHD1|p.P496L|1|0.35|ENSG00000100523|chr14:53072613-53072613|G/A|missense_variant	REV__DDHD1|p.P496L|1|0.35|ENSG00000100523|chr14:53072613-53072613|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	1094.675048828125	1	1094.4533	1093.44602	0.13722	0.00015018	1.8473	0.0020218	1.9845	0.0021719	1094.4559313041118	118.7	0.55725	118.7	118.22	118.78	0					13	10	2	0	0	0	0.75466	1	43705	43705		7.9102	3.1541	1	43112000	+		56718	15972	41299	41628	55381	55381					-0.09696650908335869
TYYRYQLN	8	Unmodified	_TYYRYQLN_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.S1772Ffs*12|1|0.13|ENSG00000123104|chr12:26494208-26494209|-/A|frameshift_variant	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-SECPEP	A375_MHC_IP_R1	1	560.2049560546875	2	560.774731	1119.53491	-0.7336	-0.00041138	0.13448	7.5414E-05	-0.59912	-0.00033597	560.7748230050831	36.791	0.40451	36.791	36.541	36.945	0					11	7	2	0	0	0	0.94479	1	12306	12306		8.5933	0	1	1884200			56719	3825	41300	41629	55382	55382					-0.0200773156213927
TYYVLTFPS	9	Unmodified	_TYYVLTFPS_					0	0	0			REV__ENST00000553745.5_1_14:74753379-74769587:-|nuORF	REV__ENST00000553745.5_1_14:74753379-74769587:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1090.125732421875	1	1090.54554	1089.53826	-0.47039	-0.00051299	-0.91626	-0.00099922	-1.3867	-0.0015122	1091.5476641132864	123.65	1.1598	123.65	123.33	124.49	0					27	22	2	0	0	0	0.76187	1	46606	46606		3.9444	0	1	85841000	+		56720	18086	41301	41630	55383	55383					-0.002924815081541965
TYYYEKDI	8	Unmodified	_TYYYEKDI_					0	0	0			REV__ENST00000465027.1_1_7:99686972-99687407:+|nuORF	REV__ENST00000465027.1_1_7:99686972-99687407:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	547.1691284179688	2	547.755672	1093.49679	-0.8444	-0.00046253	-3.3648	-0.0018431	-4.2092	-0.0023056	547.7541791809103	30.592	0.80833	30.592	30.2	31.009	0					19	15	2	0	0	0	0.91495	1	9824	9824		24.674	0	1	2371700	+		56721	20826	41302	41631	55384	55384					-0.04621662267481952
VAAAAAAW	8	Unmodified	_VAAAAAAW_					0	0	0			REV__ENST00000529968.1_1_15:101815456-101817667:-|nuORF	REV__ENST00000529968.1_1_15:101815456-101817667:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	365.9415588378906	2	365.697764	729.380974	0.44352	0.00016219	0.11632	4.2537E-05	0.55983	0.00020473	365.69778133243534	39.195	0.15298	39.195	39.085	39.238	0					4	2	2	0	0	0	0.972	1	13328	13328		0.79363	0	1	511070	+		56722	25833	41303	41632	55385	55385					0.005459034629893722
VAAAAAAW	8	Unmodified	_VAAAAAAW_					0	0	0			REV__ENST00000529968.1_1_15:101815456-101817667:-|nuORF	REV__ENST00000529968.1_1_15:101815456-101817667:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	365.697764	729.380974	-0.32024	-0.00011711	2.4927	0.00091156	2.1724	0.00079445	365.6977958225294	38.4	0.20287	39.174	39.047	39.25	0.77451	-0.010375	0.0014449	NaN	0.79363	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	502160	+		56723	25833	41303	41632							0.005459034629893722
VAAAAFIF	8	Unmodified	_VAAAAFIF_					0	0	0			REV__ENST00000511376.5_1_4:54243811-54245264:+|nuORF	REV__ENST00000511376.5_1_4:54243811-54245264:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	809.4850463867188	1	809.455602	808.448326	-0.38672	-0.00031303	1.6631	0.0013462	1.2764	0.0010332	809.457153844275	100.36	0.60864	100.36	99.975	100.58	0					17	11	2	0	0	0	0.76194	1	36939	36939		17.087	5.9721	1	5514300	+		56724	25614	41304	41633	55386	55386					0.036439336739590544
VAAAAFIF	8	Unmodified	_VAAAAFIF_					0	0	0			REV__ENST00000511376.5_1_4:54243811-54245264:+|nuORF	REV__ENST00000511376.5_1_4:54243811-54245264:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	809.455602	808.448326	-0.38672	-0.00031303	1.6631	0.0013462	1.2764	0.0010332	809.457153844275	100.36	0.60864	100.36	99.975	100.58	0	0.10382	0.00022701	NaN	17.087	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5514300	+		56725	25614	41304	41633							0.036439336739590544
VAAAAFIF	8	Unmodified	_VAAAAFIF_					0	0	0			REV__ENST00000511376.5_1_4:54243811-54245264:+|nuORF	REV__ENST00000511376.5_1_4:54243811-54245264:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	809.455602	808.448326	-0.66492	-0.00053822	0.79728	0.00064536	0.13236	0.00010714	809.4567956004646	99.388	0.562	100.15	99.858	100.42	0.75977	-0.10382	-0.00047383	NaN	17.087	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6710700	+		56726	25614	41304	41633							0.036439336739590544
VAAAAVAAAP	10	Unmodified	_VAAAAVAAAP_					0	0	0		ENST00000608721.1_1_6:161413012-161413321:-|nuORF	ENST00000608721.1_1_6:161413012-161413321:-|nuORF	ENST00000608721.1_1_6:161413012-161413321:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	406.9400329589844	2	406.237253	810.459953	-0.034531	-1.4028E-05	-4.361	-0.0017716	-4.3955	-0.0017856	406.23716062036914	39.474	0.35516	40.249	40.067	40.422	0.77451					9	6	2	0	0	0	0.92051	1	14599	14599		7.9102	0	1	735600			56727	13929	41305	41634	55387	55387					0.04714130697266228
VAAALARLL	9	Unmodified	_VAAALARLL_					0	0	0		nc|ENSG00000005206|Q8TCT7-2|SPPL2B;nc|ENSG00000005206|Q8TCT7-4|SPPL2B;ENSG00000005206|ENST00000613503|SPPL2B	nc|ENSG00000005206|Q8TCT7-2|SPPL2B	nc|ENSG00000005206|Q8TCT7-2|SPPL2B	MULTI-SECPEP	A375_MHC_IP_R2	2	449.6972961425781	2	449.297645	896.580737	-0.21436	-9.6309E-05	-0.52633	-0.00023648	-0.74069	-0.00033279	449.2974732310045	87.445	0.50343	88.177	87.965	88.468	0.7318					14	9	2	0	0	0	0.39388	1	33301	33301		39.957	16.809	1	1312900			56728	888	41306	41635	55388	55388					0.1283095841076829
VAAAVLESL	9	Unmodified	_VAAAVLESL_					0	0	0		ENSG00000163933|ENST00000296292|RFT1;ENST00000471158.1_1_3:53137921-53154019:-|nuORF	ENSG00000163933|ENST00000296292|RFT1	ENSG00000163933|ENST00000296292|RFT1	MULTI-SECPEP	A375_MHC_IP_R1	1	871.7826538085938	1	872.50876	871.501483	-0.48402	-0.00042232	-0.00065033	-5.6742E-07	-0.48467	-0.00042288	872.508696291525	84.878	1.3251	84.878	84.494	85.819	0					61	25	4	0	0	0	0.73662	1	31344	31344		5.2307	0.47466	1	77899000			56729	6747	41307	41636	55389	55389					0.060592666659431416
VAAAYTFYAL	10	Unmodified	_VAAAYTFYAL_					0	0	0		ENSG00000127220|ENST00000247706|ABHD8	ENSG00000127220|ENST00000247706|ABHD8	ENSG00000127220|ENST00000247706|ABHD8	MSMS	A375_MHC_IP_R2	2	545.2090454101562	2	545.2844	1088.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.007	1	50.761	50.261	51.261	0.75406								0	0	0	0.14601	1	18800	18800		25.399	7.253	1				56730	4080	41308	41637	55390	55390					0.013512247287508217
VAADFVKSI	9	Unmodified	_VAADFVKSI_					0	0	0		ENSG00000105865|ENST00000265720|DUS4L	ENSG00000105865|ENST00000265720|DUS4L	ENSG00000105865|ENST00000265720|DUS4L	MULTI-SECPEP	A375_MHC_IP_R2	2	475.1339111328125	2	475.271293	948.528032	-0.68568	-0.00032588	-0.070551	-3.3531E-05	-0.75623	-0.00035941	475.27163041006264	66.397	0.56296	67.133	66.882	67.445	0.73631					12	10	2	0	0	0	0.67221	1	25158	25158		2.0598	0	1	767300			56731	2646	41309	41638	55391	55391					0.051709555572983845
VAADTLYSQ	9	Unmodified	_VAADTLYSQ_					0	0	0		nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST	nc|ENSG00000151914|Q03001|DST	nc|ENSG00000151914|Q03001|DST	MSMS	A375_MHC_IP_R1	1	484.2139587402344	2	484.24019	966.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.927	1	25.927	25.427	26.427	0								0	0	0	0.1535	1	7646	7646		15.847	0	1				56732	5934	41310	41639	55392	55392					-0.018748155817092993
VAADTVKEL	9	Unmodified	_VAADTVKEL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3;IQGAP3|p.C402R|1|0.37|ENSG00000183856|chr1:156556619-156556619|A/G|missense_variant	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	A375_MHC_IP_R1	1	473.9803161621094	2	473.266207	944.517862	-0.65345	-0.00030925	0.41205	0.00019501	-0.2414	-0.00011425	473.2664448949913	36.478	0.76264	36.478	35.982	36.745	0					20	14	2	0	0	0	0.084766	1	12205	12205		53.404	1.1357	1	1535300			56733	8538	41311	41640	55393	55393					0.04338347832049294
VAAEFWEQG	9	Unmodified	_VAAEFWEQG_					0	0	0		ENSG00000133256|ENST00000496514|PDE6B;nc|ENSG00000133256|P35913-2|PDE6B;nc|ENSG00000133256|P35913-3|PDE6B;ENST00000508173.5_1_5:149240460-149276122:-|nuORF;ENSG00000132915|ENST00000255266|PDE6A	ENSG00000133256|ENST00000496514|PDE6B;ENST00000508173.5_1_5:149240460-149276122:-|nuORF	ENSG00000133256|ENST00000496514|PDE6B	MSMS	A375_MHC_IP_R1	1	518.7155151367188	2	518.740357	1035.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.32	1	100.32	99.824	100.82	0								0	0	0	0.15486	1	36873	36873		8.5933	0.68312	1				56734	4498;4463	41312	41641	55394	55394					-0.05015395861846628
VAAELWRS	8	Unmodified	_VAAELWRS_					0	0	0		ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	MULTI-MSMS	A375_MHC_IP_R1	1	466.65313720703125	2	466.253434	930.492316	0.18159	8.4668E-05	0.24512	0.00011429	0.42672	0.00019896	466.25365833690813	45.162	0.85973	45.162	44.878	45.738	0					31	16	3	0	0	0	0.61116	1	15762	15762		44.407	0	1	6338200			56735	9481	41313	41642	55395	55395					0.024289181002814075
VAAEVGVWDNY	11	Unmodified	_VAAEVGVWDNY_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000466479.1_1_7:56130338-56130775:+|nuORF	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MSMS	A375_MHC_IP_R1	1	611.7222900390625	2	611.790578	1221.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.35	1	94.35	93.85	94.85	0								0	0	0	0.16164	1	34679	34679		10.151	1.4052	1				56736	5633	41314	41643	55396	55396					-0.035317835988507795
VAAFSSNR	8	Unmodified	_VAAFSSNR_					0	0	0		ENST00000244769.8_1_6:16303126-16303444:-|nuORF	ENST00000244769.8_1_6:16303126-16303444:-|nuORF	ENST00000244769.8_1_6:16303126-16303444:-|nuORF	MSMS	A375_MHC_IP_R2	2	426.17474365234375	2	426.222134	850.429715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.794	1	44.563	44.063	45.063	0.7691								0	0	0	0.16876	1	16325	16325		14.582	0	1				56737	10184	41315	41644	55397	55397					-0.001482279679066778
VAAFTLRSI	9	Unmodified	_VAAFTLRSI_					0	0	0		nc|ENSG00000073464|P51793-2|CLCN4;ENSG00000073464|ENST00000380833|CLCN4;nc|ENSG00000171365|P51795-1|CLCN5;ENSG00000171365|ENST00000376091|CLCN5	nc|ENSG00000073464|P51793-2|CLCN4;nc|ENSG00000171365|P51795-1|CLCN5	nc|ENSG00000171365|P51795-1|CLCN5	MULTI-SECPEP	A375_MHC_IP_R1	1	489.650146484375	2	489.292559	976.570566	-0.32463	-0.00015884	-0.70886	-0.00034684	-1.0335	-0.00050568	489.29208797323815	76.005	0.90833	76.005	75.664	76.572	0					27	17	2	0	0	0	0.67221	1	27895	27895		13.508	4.1604	1	5117000			56738	7597;1562	41316	41645	55398	55398					0.0813435068552053
VAAGDEIIGV	10	Unmodified	_VAAGDEIIGV_					0	0	0		PICK1|p.T71I|1|0.24|ENSG00000100151|chr22:38065060-38065060|C/T|missense_variant	PICK1|p.T71I|1|0.24|ENSG00000100151|chr22:38065060-38065060|C/T|missense_variant	PICK1|p.T71I|1|0.24|ENSG00000100151|chr22:38065060-38065060|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	472.6902160644531	2	472.258382	942.502212	-0.37752	-0.00017829	0.38101	0.00017994	0.0034927	1.6494E-06	472.25839758734116	100.45	0.96989	101.21	100.63	101.6	0.76278					37	18	3	0	0	0	0.30274	1	37990	37990		39.957	9.3208	1	5414700			56739	15172	41317	41646	55399	55399					0.028660613150123027
VAAGGAGA	8	Unmodified	_VAAGGAGA_					0	0	0			REV__nc|ENSG00000198408|O60502-3|OGA	REV__nc|ENSG00000198408|O60502-3|OGA	MULTI-SECPEP	A375_MHC_IP_R2	2	573.6795043945312	1	573.299101	572.291825	-0.30966	-0.00017753	2.7571	0.0015807	2.4475	0.0014031	573.2982350877829	81.69	0.20255	82.433	82.279	82.482	0.74293					5	3	2	0	0	0	0.972	1	30967	30967		0	0	1	509640	+		56740	22369	41318	41647	55400	55400					-0.0114293149651985
VAAIKALAH	9	Unmodified	_VAAIKALAH_					0	0	0			REV__nc|ENSG00000141161|Q8IWX7-2|UNC45B	REV__nc|ENSG00000141161|Q8IWX7-2|UNC45B	MULTI-SECPEP	A375_MHC_IP_R2	2	447.6817932128906	2	447.281995	892.549437	-0.52675	-0.00023561	-0.010092	-4.5138E-06	-0.53684	-0.00024012	447.2820816095147	35.73	0.50847	36.494	36.283	36.792	0.76338					13	9	2	0	0	0	0.73662	1	12999	12999		5.2307	0	1	1643600	+		56741	19248	41319	41648	55401	55401					0.09886385376648832
VAAINLMAGF	10	Unmodified	_VAAINLMAGF_					0	0	0			REV__ENST00000490780.5_1_1:111668264-111674185:-|nuORF	REV__ENST00000490780.5_1_1:111668264-111674185:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	503.11962890625	2	503.773145	1005.53174	-1.317	-0.00066348	2.4204	0.0012193	1.1034	0.00055584	503.7739822993792	37.054	0.35472	37.825	37.665	38.02	0.7709					10	6	2	0	0	0	0.73628	1	13542	13542		21.747	3.6117	1	2456100	+		56742	19967	41320	41649	55402	55402					0.02919302059490292
VAAIVSKKI	9	Unmodified	_VAAIVSKKI_					0	0	0		tr|U7SNL5|U7SNL5_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01803PE=4SV=1	tr|U7SNL5|U7SNL5_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01803PE=4SV=1	tr|U7SNL5|U7SNL5_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01803PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	929.0225830078125	1	928.618979	927.611703	-0.5711	-0.00053033	-2.4214	-0.0022486	-2.9925	-0.0027789	928.6171894787263	123.94	0.40335	123.94	123.74	124.14	0					10	7	2	0	0	0	0.79683	1	46434	46434		5.2307	0	1	16800000			56743	29556	41321	41650	55403	55403					0.1450011172498762
VAALEERLQL	10	Unmodified	_VAALEERLQL_					0	0	0			REV__ENSG00000198483|ENST00000355594|ANKRD35	REV__ENSG00000198483|ENST00000355594|ANKRD35	MULTI-SECPEP	A375_MHC_IP_R1	1	571.7101440429688	2	571.332413	1140.65027	-0.19176	-0.00010956	0.97464	0.00055684	0.78288	0.00044729	571.3356662458451	105.05	0.60928	105.05	104.79	105.4	0					21	11	3	0	0	0	0.80715	1	38520	38520		11.64	2.8949	1	1127400	+		56744	22374	41322	41651	55404	55404					0.08557372568861865
VAALGGFLYIL	11	Unmodified	_VAALGGFLYIL_					0	0	0		ENSG00000153446|ENST00000472572|C16orf89	ENSG00000153446|ENST00000472572|C16orf89	ENSG00000153446|ENST00000472572|C16orf89	MULTI-SECPEP	A375_MHC_IP_R1	1	568.2112426757812	2	568.839342	1135.66413	-0.13558	-7.7122E-05	-4.3091	-0.0024512	-4.4447	-0.0025283	569.338575837699	93.1	0.25455	93.1	92.922	93.176	0					5	4	2	0	0	0	0.98977	1	34182	34182		3.5965	0	1	905590			56745	6033	41323	41652	55405	55405					0.10172650067943323
VAALLAFPEAR	11	Unmodified	_VAALLAFPEAR_					0	0	0		ENSG00000116032|ENST00000234389|GRIN3B	ENSG00000116032|ENST00000234389|GRIN3B	ENSG00000116032|ENST00000234389|GRIN3B	MULTI-MSMS	A375_MHC_IP_R2	2	580.3593139648438	2	579.337498	1156.66044	-0.25297	-0.00014655	0.3516	0.0002037	0.098638	5.7145E-05	579.3375981823361	98.303	0.76319	99.063	98.64	99.403	0.75977					37	14	3	0	0	0	0.72119	1	37189	37189		13.906	0.86358	1	4736900			56746	3362	41324	41653	55406	55406					0.08837980294083536
VAALLPLR	8	Unmodified	_VAALLPLR_					0	0	0		ENST00000379143.9_1_20:5100355-5100478:-|nuORF	ENST00000379143.9_1_20:5100355-5100478:-|nuORF	ENST00000379143.9_1_20:5100355-5100478:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	427.1871032714844	2	426.786913	851.559273	-0.28167	-0.00012021	0.25561	0.00010909	-0.02606	-1.1122E-05	426.7870086161345	80.696	0.40641	80.696	80.541	80.948	0					13	7	2	0	0	0	0.32803	1	29520	29520		56.541	0	1	1569200			56747	11326	41325	41654	55407	55407					0.12755573382048624
VAALLPLR	8	Unmodified	_VAALLPLR_					0	0	0		ENST00000379143.9_1_20:5100355-5100478:-|nuORF	ENST00000379143.9_1_20:5100355-5100478:-|nuORF	ENST00000379143.9_1_20:5100355-5100478:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	426.786913	851.559273	-0.11285	-4.8162E-05	-0.36862	-0.00015732	-0.48147	-0.00020548	426.7866572072011	79.755	0.40836	80.5	80.249	80.657	0.74474	-0.09796	-0.00028508	NaN	56.541	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1290500			56748	11326	41325	41654							0.12755573382048624
VAALRGRLV	9	Unmodified	_VAALRGRLV_					0	0	0		ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	MULTI-SECPEP	A375_MHC_IP_R1	1	478.2136535644531	2	477.813993	953.613434	-0.34248	-0.00016364	-0.042898	-2.0497E-05	-0.38538	-0.00018414	477.81382300605645	45.864	0.30468	45.864	45.687	45.992	0					10	5	2	0	0	0	0.67221	1	16104	16104		13.508	3.3245	1	1585800			56749	7039	41326	41655	55408	55408					0.13477165533606694
VAAMPRPVSY	10	Oxidation (M)	_VAAM(Oxidation (M))PRPVSY_		VAAM(1)PRPVSY		VAAM(97)PRPVSY	0	0	1		ENSG00000114796|ENST00000242810|KLHL24;KLHL24|p.H585Y|1|0.53|ENSG00000114796|chr3:183679236-183679236|C/T|missense_variant	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	MULTI-MSMS	A375_MHC_IP_R1	1	554.1867065429688	2	553.786784	1105.55902	-0.49135	-0.0002721	0.19809	0.0001097	-0.29326	-0.00016241	553.7869581819141	31.591	0.50721	31.591	31.262	31.769	0					21	9	3	0	0	0	0.0036544	1	10171	10171		96.936	64.15	1	11078000			56750	3247	41327	41656	55409	55409		154			0.010457855998765808
VAAMPRPVSY	10	Oxidation (M)	_VAAM(Oxidation (M))PRPVSY_		VAAM(1)PRPVSY		VAAM(87)PRPVSY	0	0	1		ENSG00000114796|ENST00000242810|KLHL24;KLHL24|p.H585Y|1|0.53|ENSG00000114796|chr3:183679236-183679236|C/T|missense_variant	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	MULTI-SECPEP	A375_MHC_IP_R1	1	554.1864624023438	2	553.786784	1105.55902	-0.68266	-0.00037805	0.69496	0.00038486	0.012302	6.8127E-06	553.7874822521984	31.144	0.70909	31.144	30.603	31.312	0					24	13	3	0	0	0	0.095473	1	9956	9956		87.258	57.418	1	8862600			56751	3247	41327	41656	55410	55410		154			0.010457855998765808
VAAMPRPVSY	10	Oxidation (M)	_VAAM(Oxidation (M))PRPVSY_		VAAM(1)PRPVSY		VAAM(69)PRPVSY	0	0	1		ENSG00000114796|ENST00000242810|KLHL24;KLHL24|p.H585Y|1|0.53|ENSG00000114796|chr3:183679236-183679236|C/T|missense_variant	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	MULTI-SECPEP	A375_MHC_IP_R2	2	554.186279296875	2	553.786784	1105.55902	-0.79057	-0.00043781	-0.61488	-0.00034051	-1.4055	-0.00077832	553.7867641447633	30.512	0.45468	31.231	30.962	31.417	0.71857					24	8	4	0	0	0	0.15631	1	10713	10713		69.338	46.602	1	10022000			56752	3247	41327	41656	55411	55411		154			0.010457855998765808
VAAMPRPVSY	10	Oxidation (M)	_VAAM(Oxidation (M))PRPVSY_		VAAM(1)PRPVSY		VAAM(81)PRPVSY	0	0	1		ENSG00000114796|ENST00000242810|KLHL24;KLHL24|p.H585Y|1|0.53|ENSG00000114796|chr3:183679236-183679236|C/T|missense_variant	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	MULTI-SECPEP	A375_MHC_IP_R2	2	554.1860961914062	2	553.786784	1105.55902	-0.80751	-0.00044719	-0.51928	-0.00028757	-1.3268	-0.00073475	553.7867436373772	30.927	0.50611	31.645	31.417	31.923	0.71857					27	9	4	0	0	0	0.081287	1	10949	10949		80.676	51.594	1	12056000			56753	3247	41327	41656	55412	55412		154			0.010457855998765808
VAAMPRPVSY	10	Unmodified	_VAAMPRPVSY_					0	0	0		ENSG00000114796|ENST00000242810|KLHL24;KLHL24|p.H585Y|1|0.53|ENSG00000114796|chr3:183679236-183679236|C/T|missense_variant	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	MULTI-SECPEP	A375_MHC_IP_R1	1	545.1539306640625	2	545.789327	1089.5641	-0.15633	-8.5321E-05	-0.61587	-0.00033613	-0.77219	-0.00042146	545.7888994332623	48.522	1.415	48.522	47.467	48.882	0					39	25	3	0	0	0	0.45119	1	17121	17121		47.732	47.732	1	11101000			56754	3247	41327	41657	55413	55413					0.022900894624854118
VAAMPRPVSY	10	Unmodified	_VAAMPRPVSY_					0	0	0		ENSG00000114796|ENST00000242810|KLHL24;KLHL24|p.H585Y|1|0.53|ENSG00000114796|chr3:183679236-183679236|C/T|missense_variant	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	MULTI-SECPEP	A375_MHC_IP_R2	2	546.188720703125	2	545.789327	1089.5641	-0.6674	-0.00036426	-0.59137	-0.00032276	-1.2588	-0.00068702	545.7889768012278	47.722	0.75911	48.484	48.174	48.933	0.76128					27	13	3	0	0	0	0.41795	1	17914	17914		74.2	46.571	1	11761000			56755	3247	41327	41657	55414	55414					0.022900894624854118
VAAMYYSYY	9	Unmodified	_VAAMYYSYY_					0	0	0		ENST00000535202.1_1_12:132211588-132237909:+|nuORF;ENST00000538548.5_1_12:132198725-132271134:+|nuORF;ENSG00000061936|ENST00000261674|SFSWAP;nc|ENSG00000061936|Q12872-2|SFSWAP	ENST00000535202.1_1_12:132211588-132237909:+|nuORF	ENST00000535202.1_1_12:132211588-132237909:+|nuORF	MSMS	A375_MHC_IP_R2	2	565.7108154296875	2	565.746793	1129.47903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.42	1	111.16	110.66	111.66	0.73692								0	0	0	0.15486	1	41654	41654		13.508	0.97634	1				56756	1322	41328	41658	55415	55415					-0.080527007939736
VAANMHAGSI	10	Unmodified	_VAANMHAGSI_					0	0	0			REV__ENSG00000165269|ENST00000297988|AQP7	REV__ENSG00000165269|ENST00000297988|AQP7	MULTI-MSMS	A375_MHC_IP_R1	1	486.1415710449219	2	485.742376	969.4702	-0.19675	-9.557E-05	-1.0866	-0.00052783	-1.2834	-0.0006234	485.74177875990677	102.16	0.80891	102.16	101.85	102.66	0					33	15	3	0	0	0	0.48529	1	37503	37503		29.082	29.082	1	7843000	+		56757	20568	41329	41659	55416	55416					-0.015756296397853475
VAANMHAGSI	10	Unmodified	_VAANMHAGSI_					0	0	0			REV__ENSG00000165269|ENST00000297988|AQP7	REV__ENSG00000165269|ENST00000297988|AQP7	MULTI-SECPEP	A375_MHC_IP_R1	1	486.1415710449219	2	485.742376	969.4702	-0.19675	-9.557E-05	-1.0866	-0.00052783	-1.2834	-0.0006234	485.74177875990677	102.16	0.80891	102.16	101.85	102.66	0					33	15	3	0	0	0	0.74754	1	37503	37503		29.082	29.082	1	7843000	+		56758	20568	41329	41659	55417	55417					-0.015756296397853475
VAANMHAGSI	10	Unmodified	_VAANMHAGSI_					0	0	0			REV__ENSG00000165269|ENST00000297988|AQP7	REV__ENSG00000165269|ENST00000297988|AQP7	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	485.742376	969.4702	-0.49363	-0.00023978	-0.64724	-0.00031439	-1.1409	-0.00055417	485.74198192549915	101.27	0.71142	102.03	101.7	102.41	0.76428	-0.064628	0.00016679	NaN	29.082	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8612400	+		56759	20568	41329	41659							-0.015756296397853475
VAANVLNFSD	10	Unmodified	_VAANVLNFSD_					0	0	0		nc|ENSG00000152683|Q6NXT4-3|SLC30A6;ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6;nc|ENSG00000152683|Q6NXT4-4|SLC30A6	nc|ENSG00000152683|Q6NXT4-3|SLC30A6	nc|ENSG00000152683|Q6NXT4-3|SLC30A6	MSMS	A375_MHC_IP_R1	1	525.162109375	2	525.266739	1048.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.932	1	99.932	99.432	100.43	0								0	0	0	0.15207	1	36720	36720		13.906	0	1				56760	5979	41330	41660	55418	55418					-0.00339437799038933
VAAPITVR	8	Unmodified	_VAAPITVR_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MULTI-MSMS	A375_MHC_IP_R2	2	414.16107177734375	2	413.760895	825.507237	0.20786	8.6003E-05	0.034267	1.4178E-05	0.24212	0.00010018	413.76086225597135	46.942	0.55811	47.703	47.361	47.919	0.76127					18	10	2	0	0	0	0.69583	1	17583	17583		36.044	0	1	2552300			56761	7484	41331	41661	55419	55419					0.08750409968274653
VAAPSRIPF	9	Unmodified	_VAAPSRIPF_					0	0	0		ENST00000467910.5_1_9:136231851-136242840:-|nuORF	ENST00000467910.5_1_9:136231851-136242840:-|nuORF	ENST00000467910.5_1_9:136231851-136242840:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	479.19189453125	2	479.279452	956.544351	-0.52912	-0.0002536	0.24697	0.00011837	-0.28215	-0.00013523	479.279486936335	62.917	0.50406	63.659	63.383	63.888	0.74263					14	9	2	0	0	0	0.22013	1	23815	23815		36.506	6.2814	1	1745200			56762	12290	41332	41662	55420	55420					0.06434081514032641
VAAPSTYVQV	10	Unmodified	_VAAPSTYVQV_					0	0	0			REV__nc|ENSG00000091073|Q86UW9-2|DTX2	REV__nc|ENSG00000091073|Q86UW9-2|DTX2	MULTI-SECPEP	A375_MHC_IP_R1	1	518.1670532226562	2	517.779482	1033.54441	-0.21538	-0.00011152	0.97359	0.00050411	0.75821	0.00039258	517.7801862152626	44.501	1.6804	44.501	43.4	45.081	0					48	32	3	0	0	0	0.27864	1	15223	15223		27.629	7.2143	1	7767600	+		56763	16941	41333	41663	55421	55421					0.028980367233543802
VAAPSTYVQV	10	Unmodified	_VAAPSTYVQV_					0	0	0			REV__nc|ENSG00000091073|Q86UW9-2|DTX2	REV__nc|ENSG00000091073|Q86UW9-2|DTX2	MULTI-MATCH	A375_MHC_IP_R2	2		2	517.779482	1033.54441	-0.57354	-0.00029697	1.3663	0.00070742	0.79272	0.00041045	517.7801616319758	43.786	2.1272	44.555	42.959	45.086	0.7691	0.027055	0.00015844	NaN	27.629	78	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7257000	+		56764	16941	41333	41663							0.028980367233543802
VAAPSWLHRF	10	Unmodified	_VAAPSWLHRF_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	A375_MHC_IP_R1	1	395.9515380859375	3	395.217214	1182.62981	0.3569	0.00014105	0.03263	1.2896E-05	0.38953	0.00015395	395.2171662047492	69.201	0.55882	69.201	68.92	69.478	0					29	10	4	0	0	0	0.026732	1	25089	25089		62.869	47.62	1	12287000			56765	3330	41334	41664	55422	55422					0.04580246699674717
VAAPSWLHRF	10	Unmodified	_VAAPSWLHRF_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	A375_MHC_IP_R2	2	395.6173095703125	3	395.217214	1182.62981	-0.029697	-1.1737E-05	0.24529	9.6942E-05	0.21559	8.5205E-05	395.21724202130747	68.36	0.60736	69.095	68.816	69.423	0.73511					25	11	3	0	0	0	0.026732	1	25893	25893		62.869	49.35	1	10301000			56766	3330	41334	41664	55423	55423					0.04580246699674717
VAAPVVKEL	9	Unmodified	_VAAPVVKEL_					0	0	0		ENST00000489976.1_1_1:45278922-45279441:+|nuORF;ENST00000485668.5_1_1:45278776-45279441:+|nuORF;ENSG00000222009|ENST00000450269|BTBD19	ENST00000489976.1_1_1:45278922-45279441:+|nuORF	ENST00000489976.1_1_1:45278922-45279441:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	463.68939208984375	2	463.289485	924.564418	-0.059801	-2.7705E-05	0.086015	3.985E-05	0.026214	1.2145E-05	463.2894476002495	51.706	0.55812	51.706	51.424	51.982	0					23	10	3	0	0	0	0.032333	1	18364	18364		72.968	8.7316	1	9567000			56767	9681	41335	41665	55424	55424					0.09911832453997249
VAAPVVKEL	9	Unmodified	_VAAPVVKEL_					0	0	0		ENST00000489976.1_1_1:45278922-45279441:+|nuORF;ENST00000485668.5_1_1:45278776-45279441:+|nuORF;ENSG00000222009|ENST00000450269|BTBD19	ENST00000489976.1_1_1:45278922-45279441:+|nuORF	ENST00000489976.1_1_1:45278922-45279441:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	463.6890869140625	2	463.289485	924.564418	-0.64897	-0.00030066	0.39389	0.00018248	-0.25508	-0.00011818	463.2895665944017	50.821	0.55514	51.575	51.311	51.866	0.75406					22	10	3	0	0	0	0.050868	1	19111	19111		63.961	17.94	1	7705500			56768	9681	41335	41665	55425	55425					0.09911832453997249
VAAPVVRRV	9	Unmodified	_VAAPVVRRV_					0	0	0		ENST00000474900.5_1_11:132177611-132182586:+|nuORF;ENST00000490356.2_1_11:132177611-132182375:+|nuORF;nc|ENSG00000182667|Q9P121-3|NTM;nc|ENSG00000182667|Q9P121|NTM;nc|ENSG00000182667|Q9P121-2|NTM;nc|ENSG00000182667|Q9P121-4|NTM;ENSG00000182667|ENST00000683400|NTM	ENST00000474900.5_1_11:132177611-132182586:+|nuORF	ENST00000474900.5_1_11:132177611-132182586:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	484.2139587402344	2	483.813993	965.613434	-0.55081	-0.00026649	0.086234	4.1721E-05	-0.46457	-0.00022477	483.81403597642384	25.892	0.40404	25.892	25.714	26.118	0					12	7	2	0	0	0	0.58271	1	7646	7646		20.454	3.5113	1	6262700			56769	8428	41336	41666	55426	55426					0.12925165533602012
VAAQEVLKAI	10	Unmodified	_VAAQEVLKAI_					0	0	0		ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	MULTI-SECPEP	A375_MHC_IP_R1	1	521.7186279296875	2	521.318774	1040.623	-0.80417	-0.00041923	0.28127	0.00014663	-0.52291	-0.0002726	521.3188398417532	67.242	0.61313	67.242	66.938	67.552	0					26	11	3	0	0	0	0.37864	1	24320	24320		45.7	0	1	5474900			56770	8384	41337	41667	55427	55427					0.10430889028475576
VAARDLTW	8	Unmodified	_VAARDLTW_					0	0	0		ENSG00000135226|ENST00000335568|UGT2B28	ENSG00000135226|ENST00000335568|UGT2B28	ENSG00000135226|ENST00000335568|UGT2B28	MULTI-SECPEP	A375_MHC_IP_R2	2	466.6530456542969	2	466.253434	930.492316	-0.59858	-0.00027909	0.045277	2.111E-05	-0.5533	-0.00025798	466.2534114536924	44.349	0.55712	45.118	44.782	45.34	0.76909					24	10	3	0	0	0	0.59711	1	16516	16516		44.407	0	1	6550200			56771	4658	41338	41668	55428	55428					0.0242891810025867
VAARDLTW	8	Unmodified	_VAARDLTW_					0	0	0		ENSG00000135226|ENST00000335568|UGT2B28	ENSG00000135226|ENST00000335568|UGT2B28	ENSG00000135226|ENST00000335568|UGT2B28	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	466.253434	930.492316	0.18159	8.4668E-05	0.24512	0.00011429	0.42672	0.00019896	466.25365833690813	45.162	0.85973	45.162	44.878	45.738	0	0.021943	0.00017043	NaN	44.407	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6338200			56772	4658	41338	41668							0.0242891810025867
VAARLRKV	8	Unmodified	_VAARLRKV_					0	0	0			REV__ENST00000257745.8_1_7:104654785-104681369:+|nuORF	REV__ENST00000257745.8_1_7:104654785-104681369:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	912.5844116210938	1	912.610146	911.602869	0.081809	7.466E-05	-0.19662	-0.00017944	-0.11481	-0.00010478	912.6109789530428	117.69	2.8941	117.69	115.48	118.37	0					72	56	2	0	0	0	0.7779	1	42808	42808		2.5775	0	1	40747000	+		56773	23159	41339	41669	55429	55429					0.1435318287916516
VAARLRKV	8	Unmodified	_VAARLRKV_					0	0	0			REV__ENST00000257745.8_1_7:104654785-104681369:+|nuORF	REV__ENST00000257745.8_1_7:104654785-104681369:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	913.7005615234375	1	912.610146	911.602869	-0.21012	-0.00019175	-1.629	-0.0014867	-1.8391	-0.0016784	912.6107702932139	116.37	2.2338	117.03	116.01	118.24	0.65961					97	43	3	0	0	0	0.7779	1	44057	44057		2.5775	0	1	34678000	+		56774	23159	41339	41669	55430	55430					0.1435318287916516
VAARNVTSAL	10	Unmodified	_VAARNVTSAL_					0	0	0			REV__ENST00000488801.5_1_2:86333370-86339044:+|nuORF	REV__ENST00000488801.5_1_2:86333370-86339044:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	501.1637878417969	2	501.290548	1000.56654	-0.84138	-0.00042178	0.096978	4.8614E-05	-0.74441	-0.00037316	501.29042018726284	38.959	0.35918	39.734	39.453	39.812	0.77451					9	6	2	0	0	0	0.87163	1	14322	14322		13.906	13.906	1	1036800	+		56775	25359	41340	41670	55431	55431					0.06628261191792717
VAARTGLL	8	Unmodified	_VAARTGLL_					0	0	0			REV__ENST00000313064.2_1_2:232378846-232379035:-|nuORF	REV__ENST00000313064.2_1_2:232378846-232379035:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	401.1530456542969	2	400.75307	799.491587	-0.38462	-0.00015414	0.35168	0.00014093	-0.03294	-1.3201E-05	400.7531045528876	33.154	0.4554	33.154	32.938	33.393	0					12	8	2	0	0	0	0.81376	1	10834	10834		39.957	5.8549	1	1850300	+		56776	23516	41341	41671	55432	55432					0.08382123451235657
VAASLVREF	9	Unmodified	_VAASLVREF_					0	0	0		ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	MULTI-SECPEP	A375_MHC_IP_R1	1	496.6820983886719	2	496.282192	990.549831	-0.31119	-0.00015444	-0.6029	-0.00029921	-0.91409	-0.00045365	496.28198177461246	63.134	0.56409	63.134	62.813	63.377	0					22	10	3	0	0	0	0.41434	1	22833	22833		26.268	0	1	1490100			56777	2670	41342	41672	55433	55433					0.05417760305851971
VAASTEEHQ	9	Unmodified	_VAASTEEHQ_					0	0	0			REV__ENSG00000115568|ENST00000411696|ZNF142	REV__ENSG00000115568|ENST00000411696|ZNF142	MULTI-MSMS	A375_MHC_IP_R2	2	486.2091369628906	2	486.225071	970.435589	-0.47176	-0.00022938	-0.21823	-0.00010611	-0.68999	-0.00033549	486.2249227625776	86.699	0.60863	87.432	87.203	87.812	0.733					29	11	3	0	0	0	0.62719	1	32925	32925		13.508	13.508	1	6648100	+		56778	17894	41343	41673	55434	55434					-0.05081174246902265
VAASVVDPE	9	Unmodified	_VAASVVDPE_					0	0	0		KIF13A|p.P906S|1|0.31|ENSG00000137177|chr6:17799340-17799340|G/A|missense_variant	KIF13A|p.P906S|1|0.31|ENSG00000137177|chr6:17799340-17799340|G/A|missense_variant	KIF13A|p.P906S|1|0.31|ENSG00000137177|chr6:17799340-17799340|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	443.6794128417969	2	443.729458	885.444362	-0.043715	-1.9398E-05	0.35298	0.00015663	0.30927	0.00013723	443.72985574073334	57.441	0.45875	57.441	57.159	57.618	0					11	8	2	0	0	0	0.43185	1	20661	20661		23.148	1.4018	1	874380			56779	14210	41344	41674	55435	55435					-0.002942006104262873
VAASYRAP	8	Unmodified	_VAASYRAP_					0	0	0			REV__nc|ENSG00000163110|Q96HC4-6|PDLIM5	REV__nc|ENSG00000163110|Q96HC4-6|PDLIM5	MULTI-MSMS	A375_MHC_IP_R2	2	418.1275939941406	2	417.727052	833.439552	-0.38088	-0.0001591	0.52805	0.00022058	0.14717	6.1476E-05	417.7272186076401	20.8	0.35615	21.41	21.21	21.566	0.61029					9	6	2	0	0	0	0.72008	1	6511	6511		28.487	3.0875	1	1042600	+		56780	27316	41345	41675	55436	55436					0.016169600374610127
VAATAARIW	9	Unmodified	_VAATAARIW_					0	0	0		ENST00000586720.5_1_17:76967660-76975958:-|nuORF;ENST00000588899.1_1_17:76973220-76975958:-|nuORF;ENST00000587310.5_1_17:76973066-76975958:-|nuORF;ENST00000589906.5_2_17:76970879-76975958:-|nuORF;ENST00000262776.7_1_17:76972225-76976165:-|nuORF	ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENST00000586720.5_1_17:76967660-76975958:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	479.6427917480469	2	479.777077	957.5396	-0.2662	-0.00012771	-0.039868	-1.9128E-05	-0.30606	-0.00014684	479.7770216993694	54.338	0.30224	54.338	54.113	54.415	0					9	5	2	0	0	0	0.31606	1	19366	19366		47.749	13.646	1	2172600			56781	13730	41346	41676	55437	55437					0.05913197371273782
VAATAARIW	9	Unmodified	_VAATAARIW_					0	0	0		ENST00000586720.5_1_17:76967660-76975958:-|nuORF;ENST00000588899.1_1_17:76973220-76975958:-|nuORF;ENST00000587310.5_1_17:76973066-76975958:-|nuORF;ENST00000589906.5_2_17:76970879-76975958:-|nuORF;ENST00000262776.7_1_17:76972225-76976165:-|nuORF	ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENST00000586720.5_1_17:76967660-76975958:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	479.64239501953125	2	479.777077	957.5396	-1.1237	-0.00053912	0.50775	0.00024361	-0.61593	-0.00029551	479.7771532911245	53.459	0.40946	54.211	53.995	54.404	0.75105					11	7	2	0	0	0	0.38578	1	20185	20185		27.629	10.687	1	1537400			56782	13730	41346	41676	55438	55438					0.05913197371273782
VAATLNGPL	9	Unmodified	_VAATLNGPL_					0	0	0			REV__ENSG00000173269|ENST00000372027|MMRN2	REV__ENSG00000173269|ENST00000372027|MMRN2	MULTI-SECPEP	A375_MHC_IP_R1	1	427.6566467285156	2	428.25036	854.486168	0.42769	0.00018316	-0.72957	-0.00031244	-0.30188	-0.00012928	428.24995134651607	44.94	0.65937	44.94	44.575	45.234	0					19	12	2	0	0	0	0.62767	1	15623	15623		16.942	6.8684	1	1781500	+		56783	21211	41347	41677	55439	55439					0.053103998687561216
VAATLNGPL	9	Unmodified	_VAATLNGPL_					0	0	0			REV__ENSG00000173269|ENST00000372027|MMRN2	REV__ENSG00000173269|ENST00000372027|MMRN2	MULTI-SECPEP	A375_MHC_IP_R2	2	427.96044921875	2	428.25036	854.486168	-0.040428	-1.7313E-05	-0.66171	-0.00028338	-0.70214	-0.00030069	428.25005873729674	43.988	0.65787	44.757	44.48	45.138	0.7691					20	12	2	0	0	0	0.58271	1	16432	16432		14.838	3.198	1	1775700	+		56784	21211	41347	41677	55440	55440					0.053103998687561216
VAATRLDSRS	10	Unmodified	_VAATRLDSRS_					0	0	0		nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN;ENST00000459963.5_1_1:160321502-160323118:+|nuORF	nc|ENSG00000162736|Q92542-2|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	MULTI-SECPEP	A375_MHC_IP_R1	1	538.182861328125	2	538.296362	1074.57817	-0.59176	-0.00031854	1.5846	0.000853	0.99288	0.00053446	538.798384804067	51.275	1.0123	51.275	50.613	51.625	0					33	19	3	0	0	0	0.73104	1	18137	18137		24.991	7.5483	1	1198900			56785	6585	41348	41678	55441	55441					0.0438645821514001
VAATRWWQL	9	Unmodified	_VAATRWWQL_					0	0	0		ENSG00000141012|ENST00000268695|GALNS	ENSG00000141012|ENST00000268695|GALNS	ENSG00000141012|ENST00000268695|GALNS	MULTI-SECPEP	A375_MHC_IP_R1	1	565.6740112304688	2	565.808908	1129.60326	-0.44683	-0.00025282	0.36113	0.00020433	-0.085703	-4.8492E-05	565.8095587208836	94.146	0.60603	94.146	93.84	94.446	0					24	11	3	0	0	0	0.46045	1	34637	34637		29.082	11.969	1	2212000			56786	5207	41349	41679	55442	55442					0.043645578083669534
VAAVGNRLY	9	Unmodified	_VAAVGNRLY_					0	0	0		ENST00000466300.1_1_1:898262-899729:+|nuORF;ENSG00000187961|ENST00000338591|KLHL17	ENST00000466300.1_1_1:898262-899729:+|nuORF	ENST00000466300.1_1_1:898262-899729:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	482.1741943359375	2	481.774534	961.534515	-0.5889	-0.00028371	0.29343	0.00014137	-0.29546	-0.00014235	481.77464956467054	39.688	0.91416	39.688	39.033	39.948	0					30	17	3	0	0	0	0.1277	1	13561	13561		64.236	28.192	1	17045000			56787	8871	41350	41680	55443	55443					0.05220893508658264
VAAVGNRLY	9	Unmodified	_VAAVGNRLY_					0	0	0		ENST00000466300.1_1_1:898262-899729:+|nuORF;ENSG00000187961|ENST00000338591|KLHL17	ENST00000466300.1_1_1:898262-899729:+|nuORF	ENST00000466300.1_1_1:898262-899729:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	482.1742858886719	2	481.774534	961.534515	-0.82843	-0.00039912	0.10409	5.0146E-05	-0.72434	-0.00034897	481.77453333748656	38.858	0.51257	39.633	39.401	39.914	0.77451					23	9	3	0	0	0	0.07754	1	14315	14315		74.423	38.379	1	16099000			56788	8871	41350	41680	55444	55444					0.05220893508658264
VAAVGSRLY	9	Unmodified	_VAAVGSRLY_					0	0	0		MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant;ENSG00000105429|ENST00000251268|MEGF8;nc|ENSG00000105429|Q7Z7M0-2|MEGF8	MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant	MEGF8|p.S2664Rfs*19|1|0.22|ENSG00000105429|chr19:42376227-42376248|TCACTCTGTGTGCTCCTCTGGA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	468.6689453125	2	468.269084	934.523616	-0.6596	-0.00030887	0.12943	6.0609E-05	-0.53017	-0.00024826	468.2690649428946	41.321	0.35616	41.321	41.164	41.521	0					10	6	2	0	0	0	0.087712	1	14277	14277		66.457	14.188	1	2584000			56789	2606	41351	41681	55445	55445					0.05373491134366759
VACFTSDW	8	Unmodified	_VACFTSDW_					0	0	0			REV__ENST00000453768.6_1_11:67208484-67210099:-|nuORF	REV__ENST00000453768.6_1_11:67208484-67210099:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	928.0762939453125	1	928.38693	927.379654	-0.69654	-0.00064666	1.539	0.0014288	0.84245	0.00078212	928.3900950314719	123.42	0.2531	123.42	123.28	123.54	0					6	4	2	0	0	0	0.972	1	46058	46058		2.8892	0	1	5656900	+		56790	21164	41352	41682	55446	55446					-0.08694098688067697
VACGGSHS	8	Unmodified	_VACGGSHS_					0	0	0		ENSG00000138646|ENST00000264350|HERC5	ENSG00000138646|ENST00000264350|HERC5	ENSG00000138646|ENST00000264350|HERC5	MULTI-SECPEP	A375_MHC_IP_R1	1	717.4321899414062	1	717.298449	716.291173	-0.44664	-0.00032037	-3.6019	-0.0025836	-4.0485	-0.002904	717.2958619158013	128.35	0.71046	128.35	128.02	128.73	0					16	13	2	0	0	0	0.972	1	49374	49374		2.8892	0	1	17122000			56791	5016	41353	41683	55447	55447					-0.07832094207878981
VACQFLKLSPD	11	Unmodified	_VACQFLKLSPD_					0	0	0			REV__ENSG00000140836|ENST00000268489|ZFHX3	REV__ENSG00000140836|ENST00000268489|ZFHX3	MULTI-MSMS	A375_MHC_IP_R1	1	407.64520263671875	3	407.549641	1219.62709	-0.23797	-9.6986E-05	4.3576	0.0017759	4.1197	0.001679	407.8864256571912	36.181	0.20301	36.181	36.033	36.236	0					5	3	2	0	0	0	0.73135	1	12058	12058		3.8459	0	1	374060	+		56792	19232	41354	41684	55448	55448					0.026066104598612583
VADALTNAVAH	11	Unmodified	_VADALTNAVAH_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;ENST00000487791.1_1_16:226802-227261:+|nuORF	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-SECPEP	A375_MHC_IP_R1	1	541.6856689453125	2	541.285463	1080.55637	-0.45074	-0.00024398	1.1076	0.00059952	0.65685	0.00035554	541.2854988955894	43.245	0.66206	43.245	42.993	43.655	0					22	12	3	0	0	0	0.041644	1	15022	15022		125.04	82.943	1	3299900			56793	8913	41355	41685	55449	55449					0.019316534665676954
VADEGVLAQ	9	Unmodified	_VADEGVLAQ_					0	0	0			REV__nc|ENSG00000168903|Q6UXE8-2|BTNL3	REV__nc|ENSG00000168903|Q6UXE8-2|BTNL3	MULTI-SECPEP	A375_MHC_IP_R1	1	450.96630859375	2	451.234907	900.455261	-0.43115	-0.00019455	-0.9618	-0.000434	-1.393	-0.00062855	451.23452024466826	38.075	0.45694	38.075	37.862	38.319	0					10	8	2	0	0	0	0.75466	1	12914	12914		0.45834	0	1	2929300	+		56794	20893	41356	41686	55450	55450					0.001052017638585312
VADKLRDQV	9	Unmodified	_VADKLRDQV_					0	0	0		ENST00000551497.1_1_12:50479576-50479971:+|nuORF	ENST00000551497.1_1_12:50479576-50479971:+|nuORF	ENST00000551497.1_1_12:50479576-50479971:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	521.6644897460938	2	522.29583	1042.57711	-0.30341	-0.00015847	0.055921	2.9207E-05	-0.24749	-0.00012926	522.2954732856377	127.95	1.5219	127.95	127.57	129.09	0					59	29	3	0	0	0	0.60012	1	49540	49540		12.532	0	1	52604000			56795	13383	41357	41687	55451	55451					0.057522438462456194
VADKLRDQV	9	Unmodified	_VADKLRDQV_					0	0	0		ENST00000551497.1_1_12:50479576-50479971:+|nuORF	ENST00000551497.1_1_12:50479576-50479971:+|nuORF	ENST00000551497.1_1_12:50479576-50479971:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	521.664306640625	2	522.29583	1042.57711	-0.64997	-0.00033947	-0.67781	-0.00035402	-1.3278	-0.00069349	522.2954268377691	128.74	0.65903	128.98	128.6	129.26	0.23946					16	12	2	0	0	0	0.60012	1	50537	50537		12.532	0	1	7794600			56796	13383	41357	41687	55452	55452					0.057522438462456194
VADKVHLMY	9	Oxidation (M)	_VADKVHLM(Oxidation (M))Y_		VADKVHLM(1)Y		VADKVHLM(44)Y	0	0	1		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	546.212158203125	2	546.281334	1090.54812	-0.62461	-0.00034121	-0.38578	-0.00021074	-1.0104	-0.00055196	546.2812249552694	32.964	1.3171	32.964	32.734	34.052	0					65	25	3	0	0	0	0.13845	1	10955	10955		43.772	25.626	1	43132000			56797	3705	41358	41688	55453	55453		190			0.006463832255803936
VADKVHLMY	9	Oxidation (M)	_VADKVHLM(Oxidation (M))Y_		VADKVHLM(1)Y		VADKVHLM(57)Y	0	0	1		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	364.94525146484375	3	364.523315	1090.54812	0.12234	4.4596E-05	-0.29659	-0.00010811	-0.17425	-6.3518E-05	364.5231546450722	32.965	2.0248	32.965	32.734	34.759	0					112	39	5	0	0	0	0.15736	1	10876	10876		57.108	35.517	1	145480000			56798	3705	41358	41688	55454	55454		190			0.006463832255803936
VADKVHLMY	9	Oxidation (M)	_VADKVHLM(Oxidation (M))Y_		VADKVHLM(1)Y		VADKVHLM(65)Y	0	0	1		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	364.9228820800781	3	364.523315	1090.54812	0.35448	0.00012922	-0.31279	-0.00011402	0.041689	1.5197E-05	364.52305179202534	42.528	0.6074	42.528	42.233	42.841	0					24	11	3	0	0	0	0.15736	1	14732	14732		64.927	41.137	1	6194400			56799	3705	41358	41688	55455	55455		190			0.006463832255803936
VADKVHLMY	9	Oxidation (M)	_VADKVHLM(Oxidation (M))Y_		VADKVHLM(1)Y		VADKVHLM(140)Y	0	0	1		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	546.6810913085938	2	546.281334	1090.54812	-0.83962	-0.00045867	-0.4175	-0.00022807	-1.2571	-0.00068674	546.2812032380456	32.241	1.5783	32.978	32.704	34.282	0.73691					69	30	4	0	0	0	0.0028027	4	11414	11414;11526;11561;11670		139.14	93.118	1	32390000			56800	3705	41358	41688	55456;55457;55458;55459	55456		190			0.006463832255803936
VADKVHLMY	9	Oxidation (M)	_VADKVHLM(Oxidation (M))Y_		VADKVHLM(1)Y		VADKVHLM(50)Y	0	0	1		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	364.92315673828125	3	364.523315	1090.54812	-0.06558	-2.3906E-05	-0.63603	-0.00023185	-0.70161	-0.00025575	364.5230775831631	41.624	0.61053	42.399	42.149	42.759	0.77451					31	11	4	0	0	0	0.25548	1	15452	15452		49.742	35.524	1	7074300			56801	3705	41358	41688	55460	55460		190			0.006463832255803936
VADKVHLMY	9	Oxidation (M)	_VADKVHLM(Oxidation (M))Y_		VADKVHLM(1)Y		VADKVHLM(65)Y	0	0	1		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	364.9232177734375	3	364.523315	1090.54812	-0.063792	-2.3254E-05	-0.26218	-9.5572E-05	-0.32598	-0.00011883	364.5231525144106	32.199	2.183	32.936	32.605	34.788	0.73692					123	42	5	0	0	0	0.15736	1	11413	11413		64.927	43.337	1	130380000			56802	3705	41358	41688	55461	55461		190			0.006463832255803936
VADKVHLMY	9	Oxidation (M)	_VADKVHLM(Oxidation (M))Y_		VADKVHLM(1)Y		VADKVHLM(70)Y	0	0	1		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	546.6807861328125	2	546.281334	1090.54812	-0.86891	-0.00047467	-0.59376	-0.00032436	-1.4627	-0.00079903	546.2809352960181	41.643	0.55934	42.417	42.047	42.607	0.77451					19	10	3	0	0	0	0.11849	1	15483	15483		70.332	52.186	1	2091700			56803	3705	41358	41688	55462	55462		190			0.006463832255803936
VADKVHLMY	9	Unmodified	_VADKVHLMY_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	359.5914306640625	3	359.191677	1074.5532	0.24594	8.8338E-05	-0.40741	-0.00014634	-0.16147	-5.8E-05	359.1915010732897	42.474	1.1151	42.474	42.082	43.197	0					50	21	4	0	0	0	0.04447	1	14702	14702		53.317	33.955	1	43584000			56804	3705	41358	41689	55463	55463					0.018906870881892246
VADKVHLMY	9	Unmodified	_VADKVHLMY_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	538.683349609375	2	538.283877	1074.5532	-0.52466	-0.00028242	-0.84371	-0.00045416	-1.3684	-0.00073657	538.2838574009188	42.499	0.9635	42.499	42.233	43.197	0					45	18	5	0	0	0	0.013591	1	14724	14724		106.94	70.813	1	14013000			56805	3705	41358	41689	55464	55464					0.018906870881892246
VADKVHLMY	9	Unmodified	_VADKVHLMY_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	359.5914611816406	3	359.191677	1074.5532	-0.26341	-9.4616E-05	-0.26828	-9.6365E-05	-0.5317	-0.00019098	359.191551981185	41.653	1.1218	42.428	42.149	43.27	0.77451					50	21	4	0	0	0	0.10622	1	15426	15426		39.213	23.965	1	71526000			56806	3705	41358	41689	55465	55465					0.018906870881892246
VADKVHLMY	9	Unmodified	_VADKVHLMY_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	538.683349609375	2	538.283877	1074.5532	-0.92546	-0.00049816	-0.031322	-1.686E-05	-0.95678	-0.00051502	538.2838933880047	41.653	0.61053	42.427	42.149	42.759	0.77451					27	11	3	0	0	0	0.010978	1	15444	15444		142.08	96.059	1	17427000			56807	3705	41358	41689	55466	55466					0.018906870881892246
VADLFLRM	8	Unmodified	_VADLFLRM_					0	0	0			REV__nc|ENSG00000135913|Q86T82-2|USP37	REV__nc|ENSG00000135913|Q86T82-2|USP37	MSMS	A375_MHC_IP_R2	2	482.66619873046875	2	482.767863	963.521173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.99	1	45.759	45.259	46.259	0.7691								0	0	0	0.16876	1	16808	16808		14.582	0	1		+		56808	18898	41359	41690	55467	55467					0.037953194050714956
VADLNDPIAN	10	Unmodified	_VADLNDPIAN_					0	0	0			REV__nc|ENSG00000087245|P08253-2|MMP2	REV__nc|ENSG00000087245|P08253-2|MMP2	MULTI-MSMS	A375_MHC_IP_R1	1	521.6644897460938	2	521.264196	1040.51384	-0.5235	-0.00027288	1.1294	0.0005887	0.60586	0.00031581	521.2648265870484	128.86	0.25552	128.86	128.73	128.99	0					6	4	2	0	0	0	0.33265	1	49540	49540		38.176	0	1	10224000	+		56809	16869	41360	41691	55468	55468					-0.004797416616611372
VADLNDPIAN	10	Unmodified	_VADLNDPIAN_					0	0	0			REV__nc|ENSG00000087245|P08253-2|MMP2	REV__nc|ENSG00000087245|P08253-2|MMP2	MULTI-MSMS	A375_MHC_IP_R2	2	521.664306640625	2	521.264196	1040.51384	-0.68407	-0.00035658	1.3539	0.00070573	0.6698	0.00034914	521.2648633341616	128.64	0.20123	128.88	128.76	128.96	0.23946					6	3	2	0	0	0	0.33265	1	50537	50537		38.176	0	1	8272400	+		56810	16869	41360	41691	55469	55469					-0.004797416616611372
VADLNDPIAN	10	Unmodified	_VADLNDPIAN_					0	0	0			REV__nc|ENSG00000087245|P08253-2|MMP2	REV__nc|ENSG00000087245|P08253-2|MMP2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	521.264196	1040.51384	-0.5235	-0.00027288	1.1294	0.0005887	0.60586	0.00031581	521.2648265870484	128.86	0.25552	128.86	128.73	128.99	0	-0.010919	-0.00012732	NaN	38.176	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10224000	+		56811	16869	41360	41691							-0.004797416616611372
VADLNDPIAN	10	Unmodified	_VADLNDPIAN_					0	0	0			REV__nc|ENSG00000087245|P08253-2|MMP2	REV__nc|ENSG00000087245|P08253-2|MMP2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	521.264196	1040.51384	-0.68407	-0.00035658	1.3539	0.00070573	0.6698	0.00034914	521.2648633341616	128.64	0.20123	128.88	128.76	128.96	0.23946	0.010919	0.00010674	NaN	38.176	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8272400	+		56812	16869	41360	41691							-0.004797416616611372
VADNCHSHA	9	Unmodified	_VADNCHSHA_					0	0	0		nc|ENSG00000261371|P16284-5|PECAM1;nc|ENSG00000261371|P16284-3|PECAM1;nc|ENSG00000261371|P16284-4|PECAM1;nc|ENSG00000261371|P16284-2|PECAM1;nc|ENSG00000261371|P16284-6|PECAM1;ENSG00000261371|ENST00000563924|PECAM1	nc|ENSG00000261371|P16284-5|PECAM1	nc|ENSG00000261371|P16284-5|PECAM1	MSMS	A375_MHC_IP_R2	2	477.100830078125	2	477.198333	952.382113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.566	1	57.316	56.816	57.816	0.75015								0	0	0	0.15486	1	21382	21382		11.64	1.4569	1				56813	9939	41361	41692	55470	55470					-0.09598250230408212
VADNCHSHA	9	Unmodified	_VADNCHSHA_					0	0	0		nc|ENSG00000261371|P16284-5|PECAM1;nc|ENSG00000261371|P16284-3|PECAM1;nc|ENSG00000261371|P16284-4|PECAM1;nc|ENSG00000261371|P16284-2|PECAM1;nc|ENSG00000261371|P16284-6|PECAM1;ENSG00000261371|ENST00000563924|PECAM1	nc|ENSG00000261371|P16284-5|PECAM1	nc|ENSG00000261371|P16284-5|PECAM1	MSMS	A375_MHC_IP_R2	2	477.1007080078125	2	477.198333	952.382113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.774	1	57.524	57.024	58.024	0.75015								0	0	0	0.15486	1	21461	21461		11.64	0.81637	1				56814	9939	41361	41692	55471	55471					-0.09598250230408212
VADPFVKEF	9	Unmodified	_VADPFVKEF_					0	0	0			REV__nc|ENSG00000132122|Q9NWH7-2|SPATA6	REV__nc|ENSG00000132122|Q9NWH7-2|SPATA6	MULTI-SECPEP	A375_MHC_IP_R1	1	526.6868896484375	2	526.276575	1050.5386	-0.35037	-0.00018439	1.3214	0.00069544	0.97105	0.00051104	526.2768678823944	72.499	0.3042	72.499	72.372	72.676	0					7	5	2	0	0	0	0.50702	1	26420	26420		19.257	0	1	532160	+		56815	18638	41362	41693	55472	55472					0.015349382117165078
VADPRTVY	8	Unmodified	_VADPRTVY_					0	0	0			REV__ENST00000349606.4_1_6:16129553-16141990:+|nuORF	REV__ENST00000349606.4_1_6:16129553-16141990:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	461.1448669433594	2	460.745442	919.476331	-0.95138	-0.00043834	0.22375	0.00010309	-0.72763	-0.00033525	460.7455271862583	33.621	0.4037	34.373	34.196	34.6	0.75225					14	7	3	0	0	0	0.72637	1	12067	12067		47.749	5.9091	1	6268600	+		56816	16162	41363	41694	55473	55473					0.013372118633697028
VADQYQPSFIA	11	Unmodified	_VADQYQPSFIA_					0	0	0			REV__PITPNM3|p.S225F|1|0.33|ENSG00000091622|chr17:6478650-6478650|G/A|missense_variant	REV__PITPNM3|p.S225F|1|0.33|ENSG00000091622|chr17:6478650-6478650|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	413.9398193359375	3	413.539911	1237.5979	0.099461	4.1131E-05	0.072493	2.9979E-05	0.17195	7.111E-05	413.5399475583524	32.382	0.50702	32.382	32.127	32.634	0					23	9	3	0	0	0	0.7254	1	10450	10450		31.462	15.923	1	13340000	+		56817	27783	41364	41695	55474	55474					-0.0113921056477011
VADQYQPSFIA	11	Unmodified	_VADQYQPSFIA_					0	0	0			REV__PITPNM3|p.S225F|1|0.33|ENSG00000091622|chr17:6478650-6478650|G/A|missense_variant	REV__PITPNM3|p.S225F|1|0.33|ENSG00000091622|chr17:6478650-6478650|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	413.9397277832031	3	413.539911	1237.5979	-0.0072554	-3.0004E-06	0.07695	3.1822E-05	0.069694	2.8821E-05	413.5398926199171	31.573	0.86729	32.304	31.732	32.599	0.73134					25	16	3	0	0	0	0.47047	1	11164	11164		32.616	16.342	1	13874000	+		56818	27783	41364	41695	55475	55475					-0.0113921056477011
VADRIVNEL	9	Unmodified	_VADRIVNEL_					0	0	0			REV__ENSG00000278705|ENST00000377745|H4C2	REV__ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	A375_MHC_IP_R2	2	515.202392578125	2	514.790381	1027.56621	-0.77123	-0.00039702	0.03939	2.0278E-05	-0.73184	-0.00037674	514.7903778713159	77.525	1.3246	78.268	77.757	79.082	0.74293					60	25	4	0	0	0	0.2487	1	29589	29589		34.402	0	1	57390000	+		56819	20071	41365	41696	55476	55476					0.05352841471949432
VADRKDED	8	Unmodified	_VADRKDED_					0	0	0		ENST00000452600.1_1_2:130988892-130989183:+|nuORF	ENST00000452600.1_1_2:130988892-130989183:+|nuORF	ENST00000452600.1_1_2:130988892-130989183:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	475.6598815917969	2	474.225071	946.435589	-0.95367	-0.00045225	-0.36076	-0.00017108	-1.3144	-0.00062333	474.22486731476647	56.628	0.8171	57.378	57.101	57.918	0.75015					40	15	4	0	0	0	0.77702	1	21475	21475		5.7604	0	1	31696000			56820	12083	41366	41697	55477	55477					-0.03977174246904269
VADRLAKY	8	Unmodified	_VADRLAKY_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	A375_MHC_IP_R2	2	468.1256408691406	2	468.269084	934.523616	-0.8971	-0.00042008	0.22097	0.00010347	-0.67613	-0.00031661	468.26917785304266	38.77	0.51258	39.544	39.351	39.863	0.77451					13	9	2	0	0	0	0.93416	1	14333	14333		20.871	1.4322	1	1284600	+		56821	21249	41367	41698	55478	55478					0.05373491134366759
VADSAKLV	8	Unmodified	_VADSAKLV_					0	0	0			REV__ENSG00000187741|ENST00000389301|FANCA	REV__ENSG00000187741|ENST00000389301|FANCA	MULTI-SECPEP	A375_MHC_IP_R1	1	402.136962890625	2	401.737086	801.459619	-0.41499	-0.00016672	1.0782	0.00043315	0.6632	0.00026643	401.73724437827576	47.228	0.6664	47.228	46.85	47.517	0					29	12	4	0	0	0	0.50167	1	16569	16569		50.855	0	1	6436300	+		56822	22042	41368	41699	55479	55479					0.05094710977414252
VAEASWFC	8	Unmodified	_VAEASWFC_					0	0	0		ENST00000452673.6_1_5:179125947-179126001:+|nuORF	ENST00000452673.6_1_5:179125947-179126001:+|nuORF	ENST00000452673.6_1_5:179125947-179126001:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	457.0993347167969	2	456.699646	911.384739	-0.5231	-0.0002389	0.33578	0.00015335	-0.18731	-8.5546E-05	456.6997020367052	38.839	0.51257	39.614	39.401	39.914	0.77451					19	9	3	0	0	0	0.64599	1	14339	14339		42.968	6.5019	1	3142100			56823	12086	41369	41700	55480	55480					-0.07449794825458866
VAEEDEDD	8	Unmodified	_VAEEDEDD_					0	0	0		ENSG00000090020|ENST00000263980|SLC9A1;ENST00000374089.5_1_1:27426800-27429818:-|nuORF	ENSG00000090020|ENST00000263980|SLC9A1	ENSG00000090020|ENST00000263980|SLC9A1	MSMS	A375_MHC_IP_R1	1	461.1451416015625	2	461.169627	920.324701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.342	1	34.342	33.842	34.842	0								0	0	0	0.16876	1	11309	11309		2.8892	0	1				56824	1941	41370	41701	55481	55481					-0.13864858745660058
VAEEDEDD	8	Unmodified	_VAEEDEDD_					0	0	0		ENSG00000090020|ENST00000263980|SLC9A1;ENST00000374089.5_1_1:27426800-27429818:-|nuORF	ENSG00000090020|ENST00000263980|SLC9A1	ENSG00000090020|ENST00000263980|SLC9A1	MSMS	A375_MHC_IP_R2	2	461.14508056640625	2	461.169627	920.324701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.618	1	34.37	33.87	34.87	0.75225								0	0	0	0.16876	1	12056	12056		2.8892	0	1				56825	1941	41370	41701	55482	55482					-0.13864858745660058
VAEEDEDD	8	Unmodified	_VAEEDEDD_					0	0	0		ENSG00000090020|ENST00000263980|SLC9A1;ENST00000374089.5_1_1:27426800-27429818:-|nuORF	ENSG00000090020|ENST00000263980|SLC9A1	ENSG00000090020|ENST00000263980|SLC9A1	MSMS	A375_MHC_IP_R2	2	461.1448669433594	2	461.169627	920.324701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.642	1	34.394	33.894	34.894	0.75225								0	0	0	0.16876	1	12067	12067		2.8892	0	1				56826	1941	41370	41701	55483	55483					-0.13864858745660058
VAEEWHQRWRR	11	Unmodified	_VAEEWHQRWRR_					0	0	0			REV__ENSG00000205436|ENST00000688303|EXOC3L4	REV__ENSG00000205436|ENST00000688303|EXOC3L4	MSMS	A375_MHC_IP_R2	2	777.0130615234375	2	776.89764	1551.78073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.407	1	99.167	98.667	99.667	0.75977								0	0	0	0.16331	1	37334	37334		1.4819	0	1		+		56827	22575	41371	41702	55484	55484					0.026907813403795444
VAEGPYHV	8	Unmodified	_VAEGPYHV_					0	0	0			REV__ENSG00000131459|ENST00000253778|GFPT2	REV__ENSG00000131459|ENST00000253778|GFPT2	MSMS	A375_MHC_IP_R1	1	436.1375732421875	2	436.21906	870.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.038	1	38.038	37.538	38.538	0								0	0	0	0.16876	1	12867	12867		10.183	1.5901	1		+		56828	18605	41372	41703	55485	55485					-0.016827461994353143
VAEKASKWYS	10	Unmodified	_VAEKASKWYS_					0	0	0		nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A;ENST00000567323.2_1_15:65973610-65982833:-|nuORF	nc|ENSG00000174485|Q7Z401|DENND4A	nc|ENSG00000174485|Q7Z401|DENND4A	MULTI-MSMS	A375_MHC_IP_R1	1	390.93994140625	3	390.204751	1167.59242	0.01716	6.6959E-06	-0.42079	-0.00016419	-0.40363	-0.0001575	390.5397202629526	32.989	0.71014	32.989	32.734	33.445	0					30	13	4	0	0	0	0.70012	1	10717	10717		7.4771	0	1	6557500			56829	7887	41373	41704	55486	55486					0.01533110643413238
VAEKEKKK	8	Unmodified	_VAEKEKKK_					0	0	0		tr|U7ST22|U7ST22_FUSNURibonucleaseJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnjPE=3SV=1	tr|U7ST22|U7ST22_FUSNURibonucleaseJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnjPE=3SV=1	tr|U7ST22|U7ST22_FUSNURibonucleaseJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnjPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	480.673828125	2	480.297842	958.581131	-0.73521	-0.00035312	0.27395	0.00013158	-0.46126	-0.00022154	480.29792640986835	35.849	0.25462	36.612	36.384	36.638	0.76338					7	4	2	0	0	0	0.92636	1	13029	13029		23.148	0	1	1378900			56830	29658	41374	41705	55487	55487					0.10018333339951369
VAEKYKGLI	9	Unmodified	_VAEKYKGLI_					0	0	0			REV__ENSG00000198677|ENST00000358746|SKIC3	REV__ENSG00000198677|ENST00000358746|SKIC3	MULTI-SECPEP	A375_MHC_IP_R1	1	511.2078552246094	2	510.808042	1019.60153	-0.45505	-0.00023244	0.035524	1.8146E-05	-0.41952	-0.0002143	510.8083758347826	73.868	0.35477	73.868	73.64	73.995	0					11	6	2	0	0	0	0.50702	1	26917	26917		25.399	0	1	1729200	+		56831	22395	41375	41706	55488	55488					0.09251503999769284
VAELDDKSI	9	Unmodified	_VAELDDKSI_					0	0	0		nc|ENSG00000102900|Q8N1F7-2|NUP93;ENSG00000102900|ENST00000308159|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	MSMS	A375_MHC_IP_R2	2	495.21240234375	2	495.261122	988.507691	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.572	1	44.344	43.844	44.844	0.7724								0	0	0	0.1521	1	16238	16238		18.135	1.1927	1				56832	2399	41376	41707	55489	55489					0.012977401068042127
VAELIDQHE	9	Unmodified	_VAELIDQHE_					0	0	0		PLEKHG4B|p.V778Gfs*17|1|0.33|ENSG00000153404|chr5:163464-163465|-/C|frameshift_variant;ENSG00000153404|ENST00000637938|PLEKHG4B	PLEKHG4B|p.V778Gfs*17|1|0.33|ENSG00000153404|chr5:163464-163465|-/C|frameshift_variant	PLEKHG4B|p.V778Gfs*17|1|0.33|ENSG00000153404|chr5:163464-163465|-/C|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	526.6596069335938	2	527.264196	1052.51384	-1.0773	-0.00056802	-0.15235	-8.0328E-05	-1.2296	-0.00064835	527.2641562019206	36.9	1.5784	37.671	37.157	38.735	0.7709					24	12	3	0	0	0	0.68216	1	13784	13784		8.5933	1.8701	1	5222900			56833	6031	41377	41708	55490	55490					-0.01031741661677188
VAELWPPP	8	Unmodified	_VAELWPPP_					0	0	0		ENST00000548477.5_1_12:113758134-113758563:-|nuORF	ENST00000548477.5_1_12:113758134-113758563:-|nuORF	ENST00000548477.5_1_12:113758134-113758563:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	910.443603515625	1	908.48763	907.480354	-0.34428	-0.00031277	2.0577	0.0018694	1.7134	0.0015566	908.4904150773135	125.45	0.25029	125.75	125.57	125.82	0.2951					9	4	3	0	0	0	0.76683	1	48939	48939		15.768	0	1	32996000			56834	13351	41378	41709	55491	55491					0.022913013570928342
VAEQKNKTSYQ	11	Unmodified	_VAEQKNKTSYQ_					0	0	0		UBXN10|p.R237Q|1|0.47|ENSG00000162543|chr1:20191271-20191271|G/A|missense_variant	UBXN10|p.R237Q|1|0.47|ENSG00000162543|chr1:20191271-20191271|G/A|missense_variant	UBXN10|p.R237Q|1|0.47|ENSG00000162543|chr1:20191271-20191271|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	648.733154296875	2	648.333141	1294.65173	-0.51482	-0.00033377	0.13464	8.729E-05	-0.38018	-0.00024648	648.3332031346096	66.415	0.56133	66.415	66.122	66.684	0					23	10	3	0	0	0	0.57844	1	24034	24034		24.991	2.2547	1	3356400			56835	30111	41379	41710	55492	55492					0.016189618669613992
VAEQKNKTSYQ	11	Unmodified	_VAEQKNKTSYQ_					0	0	0		UBXN10|p.R237Q|1|0.47|ENSG00000162543|chr1:20191271-20191271|G/A|missense_variant	UBXN10|p.R237Q|1|0.47|ENSG00000162543|chr1:20191271-20191271|G/A|missense_variant	UBXN10|p.R237Q|1|0.47|ENSG00000162543|chr1:20191271-20191271|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	648.333141	1294.65173	-0.86121	-0.00055835	0.050978	3.3051E-05	-0.81024	-0.0005253	648.3330167774245	65.653	0.71245	66.391	66.018	66.731	0.73812	-0.012167	-4.7146E-05	NaN	24.991	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4790000			56836	30111	41379	41710							0.016189618669613992
VAEQLRKPQKL	11	Unmodified	_VAEQLRKPQKL_					0	0	0			REV__ENST00000609398.5_1_17:1616063-1617149:-|nuORF	REV__ENST00000609398.5_1_17:1616063-1617149:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	437.6690673828125	3	437.269866	1308.78777	-0.49288	-0.00021552	-0.93249	-0.00040775	-1.4254	-0.00062327	437.26936328962364	140.26	0.51465	140.26	140.13	140.65	0					18	9	4	0	0	0	0.73881	1	53899	53899		0.50596	0	1	2739200	+		56837	26567	41380	41711	55493	55493					0.1457270116827658
VAEQLRKPQKL	11	Unmodified	_VAEQLRKPQKL_					0	0	0			REV__ENST00000609398.5_1_17:1616063-1617149:-|nuORF	REV__ENST00000609398.5_1_17:1616063-1617149:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	437.269866	1308.78777	-0.1039	-4.5433E-05	-1.0194	-0.00044575	-1.1233	-0.00049118	437.60381841176917	140.26	0.45975	140.31	140.14	140.6	0.04216	0.02217	-2.9786E-05	NaN	0.50596	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1608900	+		56838	26567	41380	41711							0.1457270116827658
VAEQVLNAV	9	Unmodified	_VAEQVLNAV_					0	0	0		ENSG00000121064|ENST00000262288|SCPEP1;nc|ENSG00000121064|Q9HB40-2|SCPEP1;ENST00000570589.5_1_17:55065091-55074421:+|nuORF	ENSG00000121064|ENST00000262288|SCPEP1	ENSG00000121064|ENST00000262288|SCPEP1	MULTI-MSMS	A375_MHC_IP_R1	1	472.67718505859375	2	471.766374	941.518196	-0.164	-7.7371E-05	-0.10416	-4.9137E-05	-0.26816	-0.00012651	471.76634092782206	108	1.5292	108	106.98	108.51	0					67	29	3	0	0	0	0.4867	1	39718	39718		20.454	0	1	9881600			56839	3706	41381	41712	55494	55494					0.045097675518945834
VAERLAPV	8	Unmodified	_VAERLAPV_					0	0	0			REV__ENST00000546956.1_1_19:58514724-58514835:+|nuORF	REV__ENST00000546956.1_1_19:58514724-58514835:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	428.3189697265625	2	427.758352	853.502152	0.034937	1.4944E-05	-0.098949	-4.2326E-05	-0.064012	-2.7382E-05	427.758336868347	37.428	2.2431	37.428	37.045	39.289	0					124	43	6	0	0	0	0.61116	1	12955	12955		44.407	0	1	492890000	+		56840	26004	41382	41713	55495	55495					0.06954106105649771
VAERPVSY	8	Unmodified	_VAERPVSY_					0	0	0		nc|ENSG00000138311|Q70YC5-2|ZNF365;ENSG00000138311|ENST00000395254|ZNF365;nc|ENSG00000138311|Q70YC5-4|ZNF365;nc|ENSG00000138311|Q70YC5-3|ZNF365	nc|ENSG00000138311|Q70YC5-2|ZNF365	nc|ENSG00000138311|Q70YC5-2|ZNF365	MULTI-SECPEP	A375_MHC_IP_R1	1	461.1451416015625	2	460.745442	919.476331	-0.30062	-0.00013851	0.0698	3.216E-05	-0.23082	-0.00010635	460.74540994539865	34.329	0.45457	34.329	34.103	34.557	0					21	8	4	0	0	0	0.80467	1	11309	11309		41.84	5.7126	1	7508100			56841	4977	41383	41714	55496	55496					0.013372118633810715
VAERSGLLV	9	Unmodified	_VAERSGLLV_					0	0	0			REV__ENST00000407780.7_1_21:45648256-45648535:-|nuORF	REV__ENST00000407780.7_1_21:45648256-45648535:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	473.6651916503906	2	472.282192	942.549831	-1.0705	-0.0005056	0.2567	0.00012124	-0.81384	-0.00038436	472.2822735585846	53.678	1.2766	54.429	53.842	55.118	0.75105					70	24	4	0	0	0	0.55471	1	20340	20340		17.113	0	1	73374000	+		56842	24454	41384	41715	55497	55497					0.07625760305870699
VAERSRIHKF	10	Unmodified	_VAERSRIHKF_					0	0	0			REV__ENSG00000197653|ENST00000673944|DNAH10	REV__ENSG00000197653|ENST00000673944|DNAH10	MSMS	A375_MHC_IP_R2	2	414.9404602050781	3	414.907039	1241.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.438	1	43.21	42.71	43.71	0.7724								0	0	0	0.15324	1	15787	15787		10.315	1.5635	1		+		56843	22307	41385	41716	55498	55498					0.08810705648443218
VAESNGSSS	9	Unmodified	_VAESNGSSS_					0	0	0			REV__TACC2|p.P2103S|1|0.1|ENSG00000138162|chr10:122210732-122210732|C/T|missense_variant	REV__TACC2|p.P2103S|1|0.1|ENSG00000138162|chr10:122210732-122210732|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	419.1367492675781	2	419.182872	836.35119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.89	1	139.95	139.45	140.45	0.059906								0	0	0	0.15486	1	54784	54784		3.9444	0	1		+		56844	28075	41386	41717	55499	55499					-0.07353125063650623
VAESPPEW	8	Unmodified	_VAESPPEW_					0	0	0			REV__ENST00000498652.1_1_7:27186997-27192018:-|nuORF	REV__ENST00000498652.1_1_7:27186997-27192018:-|nuORF	MSMS	A375_MHC_IP_R1	1	457.6715393066406	2	457.71635	913.418148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.693	1	44.693	44.193	45.193	0								0	0	0	0.16876	1	15606	15606		13.508	0	1		+		56845	25479	41387	41718	55500	55500					-0.042024697819101675
VAETGCWF	8	Unmodified	_VAETGCWF_					0	0	0		ENST00000270142.10_1_21:33031936-33032011:+|nuORF	ENST00000270142.10_1_21:33031936-33032011:+|nuORF	ENST00000270142.10_1_21:33031936-33032011:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	457.099853515625	2	456.699646	911.384739	-0.40812	-0.00018639	0.74555	0.00034049	0.33743	0.0001541	456.69986192911745	39.601	0.65899	39.601	39.289	39.948	0					18	12	2	0	0	0	0.88799	1	13555	13555		20.871	0	1	2910900			56846	10374	41388	41719	55501	55501					-0.07449794825458866
VAFAWCLY	8	Unmodified	_VAFAWCLY_					0	0	0			REV__nc|ENSG00000167608|Q7Z404-1|TMC4	REV__nc|ENSG00000167608|Q7Z404-1|TMC4	MULTI-MSMS	A375_MHC_IP_R1	1	487.1342468261719	2	486.736031	971.45751	-0.29228	-0.00014227	-2.2937	-0.0011164	-2.5859	-0.0012587	486.734314762535	91.588	0.95972	91.588	90.997	91.956	0					28	18	2	0	0	0	0.70735	2	33625	33625;33726		32.454	11.582	1	4542200	+		56847	20776	41389	41720	55502;55503	55502					-0.02936041032035064
VAFAWCLY	8	Unmodified	_VAFAWCLY_					0	0	0			REV__nc|ENSG00000167608|Q7Z404-1|TMC4	REV__nc|ENSG00000167608|Q7Z404-1|TMC4	MULTI-SECPEP	A375_MHC_IP_R1	1	486.1461486816406	2	486.736031	971.45751	-0.29228	-0.00014227	-2.2937	-0.0011164	-2.5859	-0.0012587	486.734314762535	91.588	0.95972	91.588	90.997	91.956	0					28	18	2	0	0	0	0.85371	1	33617	33617		32.454	2.2288	1	4542200	+		56848	20776	41389	41720	55504	55504					-0.02936041032035064
VAFAWCLY	8	Unmodified	_VAFAWCLY_					0	0	0			REV__nc|ENSG00000167608|Q7Z404-1|TMC4	REV__nc|ENSG00000167608|Q7Z404-1|TMC4	MULTI-MSMS	A375_MHC_IP_R2	2	487.1339416503906	2	486.736031	971.45751	-0.49693	-0.00024188	-2.1752	-0.0010587	-2.6721	-0.0013006	486.73445685084823	90.892	1.2169	91.626	91.261	92.478	0.73451					33	23	2	0	0	0	0.70735	2	34554	34554;34608		32.454	10.707	1	4624800	+		56849	20776	41389	41720	55505;55506	55505					-0.02936041032035064
VAFAWCLY	8	Unmodified	_VAFAWCLY_					0	0	0			REV__nc|ENSG00000167608|Q7Z404-1|TMC4	REV__nc|ENSG00000167608|Q7Z404-1|TMC4	MULTI-SECPEP	A375_MHC_IP_R2	2	487.1339416503906	2	486.736031	971.45751	-0.49693	-0.00024188	-2.1752	-0.0010587	-2.6721	-0.0013006	486.73445685084823	90.892	1.2169	91.626	91.261	92.478	0.73451					33	23	2	0	0	0	0.85371	1	34554	34554		32.454	13.197	1	4624800	+		56850	20776	41389	41720	55507	55507					-0.02936041032035064
VAFCCLHFDL	10	Unmodified	_VAFCCLHFDL_					0	0	0		ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	MULTI-MSMS	A375_MHC_IP_R2	2	584.6694946289062	2	584.269912	1166.52527	-1.0055	-0.00058747	0.41644	0.00024331	-0.58904	-0.00034416	584.2708525649522	53.011	1.271	53.762	53.082	54.353	0.75105					50	24	3	0	0	0	0.40101	1	19966	19966		34.102	2.8341	1	12364000			56851	7855	41390	41721	55508	55508					-0.05132959163529449
VAFCCLHFDL	10	Unmodified	_VAFCCLHFDL_					0	0	0		ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	MULTI-MATCH	A375_MHC_IP_R1	1		2	584.269912	1166.52527	-0.11165	-6.5235E-05	-0.57812	-0.00033778	-0.68977	-0.00040301	584.269942786607	53.718	0.96128	53.718	53.403	54.364	0	-0.022342	-0.00013539	NaN	34.102	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13600000			56852	7855	41390	41721							-0.05132959163529449
VAFEQGKIL	9	Unmodified	_VAFEQGKIL_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ENST00000525178.5_1_11:108217294-108236232:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	A375_MHC_IP_R1	1	503.8416442871094	2	502.792392	1003.57023	-0.24133	-0.00012134	0.61949	0.00031147	0.37816	0.00019014	502.7924304257815	82.722	1.8762	82.722	81.607	83.483	0					79	36	4	0	0	0	0.46038	1	30260	30260		21.747	0	1	8680300			56853	5800	41391	41722	55509	55509					0.06858930965665877
VAFERLELKEL	11	Unmodified	_VAFERLELKEL_					0	0	0		nc|ENSG00000143674|Q5TCX8-2|MAP3K21;ENSG00000143674|ENST00000366624|MAP3K21	nc|ENSG00000143674|Q5TCX8-2|MAP3K21	nc|ENSG00000143674|Q5TCX8-2|MAP3K21	MULTI-MSMS	A375_MHC_IP_R2	2	674.2861328125	2	673.887552	1345.76055	-0.99483	-0.0006704	-1.0734	-0.00072332	-2.0682	-0.0013937	673.8865151481433	71.836	0.40554	72.57	72.364	72.77	0.73421					12	7	2	0	0	0	0.72877	1	27308	27308		10.074	0.6908	1	1893700			56854	5424	41392	41723	55510	55510					0.10150172837234095
VAFERLELKEL	11	Unmodified	_VAFERLELKEL_					0	0	0		nc|ENSG00000143674|Q5TCX8-2|MAP3K21;ENSG00000143674|ENST00000366624|MAP3K21	nc|ENSG00000143674|Q5TCX8-2|MAP3K21	nc|ENSG00000143674|Q5TCX8-2|MAP3K21	MULTI-MATCH	A375_MHC_IP_R1	1		2	673.887552	1345.76055	-0.54659	-0.00036834	-1.488	-0.0010028	-2.0346	-0.0013711	673.8864487514392	72.874	0.40552	72.874	72.524	72.93	0	0.15198	-8.2513E-05	NaN	10.074	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1698600			56855	5424	41392	41723							0.10150172837234095
VAFGMLVSY	9	Unmodified	_VAFGMLVSY_					0	0	0			REV__ENSG00000241973|ENST00000255882|PI4KA	REV__ENSG00000241973|ENST00000255882|PI4KA	MSMS	A375_MHC_IP_R2	2	493.7105407714844	2	493.754421	985.494289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.056	1	40.83	40.33	41.33	0.77451								0	0	0	0.15486	1	14819	14819		12.532	1.4171	1		+		56856	22796	41393	41724	55511	55511					0.0009621079386761267
VAFHSVIHA	9	Unmodified	_VAFHSVIHA_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.R7429Ifs*19|1|0.07|ENSG00000131018|chr6:152214911-152214966|TCTTTCTGTAGTCTGAGAGGAGATCAGAGACCAATGGCGGTTCAGATTCTGCATTC/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-10|SYNE1;nc|ENSG00000131018|Q8NF91-6|SYNE1;nc|ENSG00000131018|Q8NF91-5|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MSMS	A375_MHC_IP_R1	1	490.6688537597656	2	490.769252	979.52395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.62	1	114.62	114.12	115.12	0								0	0	0	0.15486	1	42036	42036		7.2892	0	1				56857	4300	41394	41725	55512	55512					0.03336910854227426
VAFKKTFSY	9	Unmodified	_VAFKKTFSY_					0	0	0		nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	MULTI-SECPEP	A375_MHC_IP_R1	1	364.6026306152344	3	364.20257	1089.58588	0.29979	0.00010918	-0.29232	-0.00010646	0.0074723	2.7214E-06	364.2023962936238	40.436	0.66209	40.436	40.1	40.762	0					29	12	4	0	0	0	0.16676	1	13887	13887		53.404	34.042	1	19878000			56858	4699	41395	41726	55513	55513					0.044672174827155686
VAFKKTFSY	9	Unmodified	_VAFKKTFSY_					0	0	0		nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	MULTI-SECPEP	A375_MHC_IP_R1	1	546.1995239257812	2	545.800217	1089.58588	-0.44366	-0.00024215	-0.26203	-0.00014302	-0.7057	-0.00038517	545.8000379020808	40.45	0.40633	40.45	40.254	40.66	0					12	7	2	0	0	0	0.090157	1	13903	13903		76.825	42.722	1	6667100			56859	4699	41395	41726	55514	55514					0.044672174827155686
VAFKKTFSY	9	Unmodified	_VAFKKTFSY_					0	0	0		nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	MULTI-SECPEP	A375_MHC_IP_R2	2	364.6025085449219	3	364.20257	1089.58588	-0.059912	-2.182E-05	-0.1379	-5.0225E-05	-0.19782	-7.2045E-05	364.20246139755375	39.622	0.60895	40.397	40.118	40.727	0.77451					30	11	4	0	0	0	0.28216	1	14621	14621		38.615	15.84	1	22571000			56860	4699	41395	41726	55515	55515					0.044672174827155686
VAFKKTFSY	9	Unmodified	_VAFKKTFSY_					0	0	0		nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	nc|ENSG00000135624|Q99832-3|CCT7	MULTI-SECPEP	A375_MHC_IP_R2	2	546.1997680664062	2	545.800217	1089.58588	-0.8337	-0.00045503	0.11678	6.374E-05	-0.71692	-0.00039129	545.8002615716027	39.654	0.50743	40.428	40.169	40.676	0.77451					14	9	2	0	0	0	0.053555	1	14636	14636		90.135	57.829	1	6017100			56861	4699	41395	41726	55516	55516					0.044672174827155686
VAFLSAELA	9	Unmodified	_VAFLSAELA_					0	0	0			REV__ENST00000404569.5_3_22:39905450-39907313:+|nuORF	REV__ENST00000404569.5_3_22:39905450-39907313:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	461.1579284667969	2	460.758018	919.501483	-0.18547	-8.5456E-05	-0.087063	-4.0115E-05	-0.27253	-0.00012557	460.75791650481466	81.732	0.50626	81.732	81.455	81.961	0					15	9	2	0	0	0	0.62767	1	29903	29903		16.942	0	1	1760100	+		56862	24429	41396	41727	55517	55517					0.03851266665935782
VAFNSHNKSL	10	Unmodified	_VAFNSHNKSL_					0	0	0		ENSG00000169762|ENST00000405303|TAPT1;nc|ENSG00000169762|Q6NXT6-2|TAPT1;ENST00000507425.5_1_4:16181029-16193070:-|nuORF	ENSG00000169762|ENST00000405303|TAPT1	ENSG00000169762|ENST00000405303|TAPT1	MULTI-SECPEP	A375_MHC_IP_R1	1	558.1687622070312	2	558.793455	1115.57236	-0.50379	-0.00028152	0.20227	0.00011303	-0.30153	-0.00016849	559.295359734401	61.582	0.56248	61.582	61.432	61.994	0					13	10	2	0	0	0	0.91057	1	22238	22238		11.495	0	1	1712500			56863	7437	41397	41728	55518	55518					0.01919359703470036
VAFPDTRKTY	10	Unmodified	_VAFPDTRKTY_					0	0	0		ENSG00000136379|ENST00000258884|ABHD17C	ENSG00000136379|ENST00000258884|ABHD17C	ENSG00000136379|ENST00000258884|ABHD17C	MULTI-MSMS	A375_MHC_IP_R1	1	400.28021240234375	3	399.880267	1196.61897	-0.30154	-0.00012058	-0.0093248	-3.7288E-06	-0.31087	-0.00012431	399.8801463523282	34.273	0.6072	34.273	33.95	34.557	0					19	10	3	0	0	0	0.46263	1	11297	11297		30.431	9.5603	1	5029200			56864	4783	41398	41729	55519	55519					0.028527995347531032
VAFPDTRKTY	10	Unmodified	_VAFPDTRKTY_					0	0	0		ENSG00000136379|ENST00000258884|ABHD17C	ENSG00000136379|ENST00000258884|ABHD17C	ENSG00000136379|ENST00000258884|ABHD17C	MULTI-MSMS	A375_MHC_IP_R2	2	400.2798156738281	3	399.880267	1196.61897	-0.52204	-0.00020875	-0.36526	-0.00014606	-0.8873	-0.00035481	399.8801971360289	33.551	0.60791	34.303	34.043	34.651	0.75225					17	7	3	0	0	0	0.64017	1	12069	12069		17.863	2.1245	1	4132600			56865	4783	41398	41729	55520	55520					0.028527995347531032
VAFQHPENY	9	Unmodified	_VAFQHPENY_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;ENST00000457594.2_7:74237150-74267816:-|nuORF;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;GTF2IRD2|p.G151D|1|0.58|ENSG00000196275|chr7:74822714-74822714|C/T|missense_variant	ENSG00000196275|ENST00000451013|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	MSMS	A375_MHC_IP_R2	2	552.6774291992188	2	552.759081	1103.50361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.781	1	64.522	64.022	65.022	0.74022								0	0	0	0.14359	1	24187	24187		28.487	6.7402	1				56866	7876	41399	41730	55521	55521					-0.04400304596242677
VAGALDLLLL	10	Unmodified	_VAGALDLLLL_					0	0	0			REV__ENST00000515265.2_1_5:140022188-140024328:+|nuORF	REV__ENST00000515265.2_1_5:140022188-140024328:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	499.7073669433594	2	499.318243	996.621933	-0.6218	-0.00031048	-0.72222	-0.00036062	-1.344	-0.0006711	499.31787363808496	132.11	0.19966	132.11	132.03	132.23	0					6	3	2	0	0	0	0.10302	1	50945	50945		67.344	3.1075	1	3550700	+		56867	17766	41400	41731	55522	55522					0.12348674659574499
VAGEEPASLL	10	Unmodified	_VAGEEPASLL_					0	0	0			REV__ENST00000216122.8_1_22:35820296-35820551:+|nuORF	REV__ENST00000216122.8_1_22:35820296-35820551:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	493.6634521484375	2	493.263665	984.512776	-0.36195	-0.00017854	-0.026135	-1.2892E-05	-0.38808	-0.00019143	493.26368654368343	91.699	0.55505	91.699	91.401	91.956	0					15	10	2	0	0	0	0.53225	1	33697	33697		34.102	0	1	1531000	+		56868	23031	41401	41732	55523	55523					0.01990043969431099
VAGEEPASLL	10	Unmodified	_VAGEEPASLL_					0	0	0			REV__ENST00000216122.8_1_22:35820296-35820551:+|nuORF	REV__ENST00000216122.8_1_22:35820296-35820551:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	493.6631164550781	2	493.263665	984.512776	-0.40372	-0.00019914	-0.1165	-5.7463E-05	-0.52021	-0.0002566	493.2635086169447	90.977	0.55753	91.711	91.413	91.97	0.7345					16	10	2	0	0	0	0.53225	1	34602	34602		26.884	0	1	1495800	+		56869	23031	41401	41732	55524	55524					0.01990043969431099
VAGEQGTQDI	10	Unmodified	_VAGEQGTQDI_					0	0	0		ENSG00000130287|ENST00000252575|NCAN	ENSG00000130287|ENST00000252575|NCAN	ENSG00000130287|ENST00000252575|NCAN	MULTI-SECPEP	A375_MHC_IP_R2	2	509.6458435058594	2	509.246003	1016.47745	-0.64891	-0.00033045	-0.36048	-0.00018357	-1.0094	-0.00051402	509.24599107269574	91.21	0.65858	91.945	91.666	92.325	0.7345					21	12	2	0	0	0	0.89109	1	34716	34716		3.9444	3.9444	1	2487600			56870	4233	41402	41733	55525	55525					-0.030126185583753795
VAGFDLTF	8	Unmodified	_VAGFDLTF_					0	0	0		ENSG00000182070|ENST00000380367|OR52A1	ENSG00000182070|ENST00000380367|OR52A1	ENSG00000182070|ENST00000380367|OR52A1	MSMS	A375_MHC_IP_R2	2	435.2819519042969	2	435.223811	868.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.925	1	89.657	89.157	90.157	0.7318								0	0	0	0.16876	1	33845	33845		10.183	0	1				56871	8374	41403	41734	55526	55526					-0.006409779139175953
VAGGSCPTEP	10	Unmodified	_VAGGSCPTEP_					0	0	0		ENST00000599939.1_1_19:7992074-7992344:-|nuORF	ENST00000599939.1_1_19:7992074-7992344:-|nuORF	ENST00000599939.1_1_19:7992074-7992344:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	459.60565185546875	2	459.205292	916.396032	-0.33522	-0.00015393	1.0018	0.00046003	0.66657	0.00030609	459.20569939475604	65.217	0.50802	65.217	64.903	65.411	0					15	9	2	0	0	0	0.91556	1	23621	23621		6.2058	0	1	1907300			56872	13863	41404	41735	55527	55527					-0.06551017521974245
VAGHPHRIGL	10	Unmodified	_VAGHPHRIGL_					0	0	0		nc|ENSG00000146755|Q86XT4-2|TRIM50;ENSG00000146755|ENST00000333149|TRIM50	nc|ENSG00000146755|Q86XT4-2|TRIM50	nc|ENSG00000146755|Q86XT4-2|TRIM50	MULTI-SECPEP	A375_MHC_IP_R2	2	529.1806030273438	2	528.8067	1055.59885	-0.48169	-0.00025472	-1.3117	-0.00069363	-1.7934	-0.00094836	528.8056907523408	88.342	0.86067	89.073	88.57	89.431	0.7318					29	16	3	0	0	0	0.65982	1	33555	33555		26.884	9.7708	1	4886300			56873	5634	41405	41736	55528	55528					0.0732709338544737
VAGISHEP	8	Unmodified	_VAGISHEP_					0	0	0		ENST00000503699.1_1_4:331733-352211:+|nuORF	ENST00000503699.1_1_4:331733-352211:+|nuORF	ENST00000503699.1_1_4:331733-352211:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	809.1504516601562	1	809.415194	808.407917	-0.032501	-2.6307E-05	2.664	0.0021562	2.6315	0.0021299	809.4215098676636	126.58	0.30426	126.58	126.51	126.81	0					7	5	2	0	0	0	0.96296	1	48466	48466		10.183	0	1	12584000			56874	12808	41406	41737	55529	55529					-0.003950327164830014
VAGLPDSPV	9	Unmodified	_VAGLPDSPV_					0	0	0		ENST00000305097.5_1_3:152553313-152553556:+|nuORF	ENST00000305097.5_1_3:152553313-152553556:+|nuORF	ENST00000305097.5_1_3:152553313-152553556:+|nuORF	MSMS	A375_MHC_IP_R2	2	427.6302185058594	2	427.734543	853.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.116	1	95.866	95.366	96.366	0.75045								0	0	0	0.14905	1	36137	36137		23.148	5.0134	1				56875	10567	41407	41738	55530	55530					0.021944071148027433
VAGMEWGSW	9	Unmodified	_VAGMEWGSW_					0	0	0			REV__ENSG00000204624|ENST00000294484|DISP3	REV__ENSG00000204624|ENST00000294484|DISP3	MULTI-SECPEP	A375_MHC_IP_R2	2	511.2105407714844	2	511.723652	1021.43275	-0.63766	-0.0003263	-1.5217	-0.00077868	-2.1593	-0.001105	512.2246435403546	87.116	0.50783	87.849	87.458	87.966	0.733					12	9	2	0	0	0	0.67221	1	33047	33047		4.756	0	1	778700	+		56876	22532	41408	41739	55531	55531					-0.07710720905402013
VAGMVRGLEW	10	Unmodified	_VAGMVRGLEW_					0	0	0			REV__nc|ENSG00000204498|Q9UBC1-2|NFKBIL1	REV__nc|ENSG00000204498|Q9UBC1-2|NFKBIL1	MSMS	A375_MHC_IP_R2	2	558.845947265625	2	559.294776	1116.575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.2	1	106.96	106.46	107.46	0.75977								0	0	0	0.15283	1	40147	40147		11.64	1.4569	1		+		56877	22519	41409	41740	55532	55532					0.021374918367882856
VAGPTFKL	8	Unmodified	_VAGPTFKL_					0	0	0			REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	MULTI-MSMS	A375_MHC_IP_R1	1	417.1497497558594	2	416.749996	831.485439	0.18676	7.7831E-05	0.02342	9.7604E-06	0.21018	8.7592E-05	416.7499575255633	76.161	0.8073	76.161	75.865	76.673	0					37	15	4	0	0	0	0.070281	1	27720	27720		100.37	0	1	16350000	+		56878	18234	41410	41741	55533	55533					0.06295605219713707
VAGQAHAQVTW	11	Unmodified	_VAGQAHAQVTW_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	A375_MHC_IP_R1	1	584.6149291992188	2	584.298904	1166.58326	-0.26106	-0.00015253	1.371	0.00080108	1.11	0.00064855	584.8014057935462	40.211	0.25473	40.211	40.1	40.355	0					8	4	2	0	0	0	0.92455	1	13781	13781		11.495	0	1	1164000			56879	5332	41411	41742	55534	55534					0.006627620777635457
VAGSVTASWL	10	Unmodified	_VAGSVTASWL_					0	0	0		ENST00000556772.5_1_14:73754009-73759497:-|nuORF	ENST00000556772.5_1_14:73754009-73759497:-|nuORF	ENST00000556772.5_1_14:73754009-73759497:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	496.166015625	2	495.766374	989.518196	-0.46551	-0.00023078	0.12539	6.2165E-05	-0.34012	-0.00016862	495.76647736805296	65.056	0.60868	65.056	64.7	65.309	0					26	11	4	0	0	0	0.57563	1	23536	23536		13.906	0	1	3450800			56880	13445	41412	41743	55535	55535					0.023017675518872238
VAGTATLLIV	10	Unmodified	_VAGTATLLIV_					0	0	0		nc|ENSG00000177398|Q5DID0-4|UMODL1;nc|ENSG00000177398|Q5DID0-2|UMODL1;nc|ENSG00000177398|Q5DID0-3|UMODL1;ENSG00000177398|ENST00000408910|UMODL1;ENST00000400423.6_1_21:43540943-43557727:+|nuORF	nc|ENSG00000177398|Q5DID0-4|UMODL1	nc|ENSG00000177398|Q5DID0-4|UMODL1	MULTI-SECPEP	A375_MHC_IP_R2	2	479.1067810058594	2	479.302593	956.590633	-0.46871	-0.00022465	0.40185	0.00019261	-0.066864	-3.2048E-05	479.3027754465133	89.469	0.66132	90.201	89.936	90.597	0.7318					21	12	3	0	0	0	0.53225	1	34001	34001		26.884	0	1	1824600			56881	14785	41413	41744	55536	55536					0.11060101625480456
VAGTEIVVKTH	11	Unmodified	_VAGTEIVVKTH_					0	0	0			REV__ENSG00000196911|ENST00000368564|KPNA5	REV__ENSG00000196911|ENST00000368564|KPNA5	MSMS	A375_MHC_IP_R2	2	385.2890319824219	3	385.224034	1152.65027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.424	1	68.16	67.66	68.66	0.73631								0	0	0	0.16136	1	25544	25544		11.631	1.8671	1		+		56882	22237	41414	41745	55537	55537					0.08005372568845814
VAGTLTAADIV	11	Unmodified	_VAGTLTAADIV_					0	0	0			REV__tr|U7SMK9|U7SMK9_FUSNUProbablecytosolaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pepAPE=3SV=1	REV__tr|U7SMK9|U7SMK9_FUSNUProbablecytosolaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pepAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	516.2110595703125	2	515.792589	1029.57063	-1.0151	-0.00052357	1.8705	0.00096477	0.85539	0.0004412	515.793388837184	49.922	0.30788	50.676	50.394	50.702	0.75406					7	5	2	0	0	0	0.88538	1	18694	18694		5.2969	0	1	1334500	+		56883	28305	41415	41746	55538	55538					0.05702305894828896
VAGTQRLW	8	Unmodified	_VAGTQRLW_					0	0	0		ENST00000551108.1_1_12:29542438-29639896:+|nuORF	ENST00000551108.1_1_12:29542438-29639896:+|nuORF	ENST00000551108.1_1_12:29542438-29639896:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	466.1612548828125	2	465.761426	929.5083	-0.76945	-0.00035838	1.1215	0.00052237	0.35209	0.00016399	465.76159965412864	44.906	0.81537	45.675	45.39	46.205	0.76909					34	15	3	0	0	0	0.34394	1	16766	16766		60.39	0	1	7434100			56884	13378	41416	41747	55539	55539					0.04072624337175057
VAGTTLTRQF	10	Unmodified	_VAGTTLTRQF_					0	0	0		ENST00000522686.5_1_5:163724035-163724095:+|nuORF	ENST00000522686.5_1_5:163724035-163724095:+|nuORF	ENST00000522686.5_1_5:163724035-163724095:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	364.94525146484375	3	365.204862	1092.59276	0.27502	0.00010044	-0.13083	-4.7781E-05	0.14419	5.2659E-05	365.2047976235305	33.629	0.5055	33.629	33.342	33.848	0					21	9	3	0	0	0	0.74754	1	10876	10876		14.957	1.4385	1	4619000			56885	13028	41417	41748	55540	55540					0.050165303632638825
VAGTYIIASI	10	Unmodified	_VAGTYIIASI_					0	0	0		tr|U7T1X6|U7T1X6_FUSNUUDP-N-acetylglucosamine1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murAPE=3SV=1	tr|U7T1X6|U7T1X6_FUSNUUDP-N-acetylglucosamine1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murAPE=3SV=1	tr|U7T1X6|U7T1X6_FUSNUUDP-N-acetylglucosamine1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	504.6797180175781	2	504.292225	1006.5699	0.12252	6.1788E-05	-0.23635	-0.00011919	-0.11383	-5.7404E-05	504.29208109906347	69.554	0.75837	69.554	69.377	70.135	0					24	14	3	0	0	0	0.69172	1	25342	25342		9.3831	0	1	4210200			56886	29913	41418	41749	55541	55541					0.06687511245786482
VAGVANALAHK	11	Unmodified	_VAGVANALAHK_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-SECPEP	A375_MHC_IP_R1	1	526.1438598632812	2	525.806365	1049.59818	-0.4874	-0.00025628	0.14562	7.6568E-05	-0.34178	-0.00017971	525.8062300431509	34.046	0.25337	34.046	33.95	34.203	0					8	4	2	0	0	0	0.9907	1	11241	11241		11.495	5.2889	1	1494800			56887	9826	41419	41750	55542	55542					0.07536253945750104
VAGVANALAHK	11	Unmodified	_VAGVANALAHK_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1442260742188	2	525.806365	1049.59818	-0.74145	-0.00038986	-0.29759	-0.00015647	-1.039	-0.00054633	525.8061299221838	33.317	0.35625	34.069	33.84	34.196	0.75225					8	6	2	0	0	0	0.97636	1	11876	11876		31.268	23.979	1	2638100			56888	9826	41419	41750	55543	55543					0.07536253945750104
VAGVAVAAAV	10	Unmodified	_VAGVAVAAAV_					0	0	0			REV__ENST00000563328.4_1_16:72822270-72822732:+|nuORF	REV__ENST00000563328.4_1_16:72822270-72822732:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	414.6528015136719	2	414.252903	826.491253	0.12216	5.0604E-05	-0.13175	-5.4578E-05	-0.0095937	-3.9742E-06	414.2528047275837	87.075	0.55793	87.808	87.509	88.067	0.733					18	10	2	0	0	0	0.19587	1	33093	33093		49.669	0	1	2957700	+		56889	26204	41420	41751	55544	55544					0.07106703731369635
VAGVPAEFSI	10	Unmodified	_VAGVPAEFSI_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MSMS	A375_MHC_IP_R2	2	495.1785888671875	2	495.26875	988.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.04	1	39.814	39.314	40.314	0.77451								0	0	0	0.119	1	14398	14398		39.957	3.9131	1				56890	4149	41421	41752	55545	55545					0.028226516946688207
VAGVYHESI	9	Unmodified	_VAGVYHESI_					0	0	0			REV__nc|ENSG00000141098|Q3B7J2-2|GFOD2	REV__nc|ENSG00000141098|Q3B7J2-2|GFOD2	MULTI-SECPEP	A375_MHC_IP_R2	2	488.4692687988281	2	487.750724	973.486896	-0.73744	-0.00035969	-0.38399	-0.00018729	-1.1214	-0.00054698	487.75056649819754	66.314	0.51013	67.05	66.78	67.29	0.73631					12	9	2	0	0	0	0.67221	1	25105	25105		13.508	0	1	790330	+		56891	19246	41422	41753	55546	55546					-0.0009080548219344564
VAHNDDPTD	9	Unmodified	_VAHNDDPTD_					0	0	0		ENSG00000099817|ENST00000615234|POLR2E;ENST00000592597.1_1_19:1093873-1095344:-|nuORF;ENST00000586817.5_1_19:1089487-1094188:-|nuORF	ENSG00000099817|ENST00000615234|POLR2E	ENSG00000099817|ENST00000615234|POLR2E	MULTI-MSMS	A375_MHC_IP_R1	1	492.60693359375	2	492.206878	982.399203	-0.36946	-0.00018185	0.55657	0.00027395	0.18711	9.2096E-05	492.20712199974713	28.326	0.6065	28.326	28.088	28.694	0					24	11	3	0	0	0	0.32899	2	8718	8688;8718		28.487	3.813	1	23840000			56892	2086	41423	41754	55547;55548	55548					-0.09270051143630553
VAHNDDPTD	9	Unmodified	_VAHNDDPTD_					0	0	0		ENSG00000099817|ENST00000615234|POLR2E;ENST00000592597.1_1_19:1093873-1095344:-|nuORF;ENST00000586817.5_1_19:1089487-1094188:-|nuORF	ENSG00000099817|ENST00000615234|POLR2E	ENSG00000099817|ENST00000615234|POLR2E	MULTI-SECPEP	A375_MHC_IP_R2	2	492.60693359375	2	492.206878	982.399203	-0.5148	-0.00025339	0.20858	0.00010267	-0.30622	-0.00015072	492.2072146184735	27.699	0.70908	28.378	28.149	28.858	0.67857					33	13	4	0	0	0	0.55359	1	9485	9485		28.487	3.813	1	23614000			56893	2086	41423	41754	55549	55549					-0.09270051143630553
VAHNDDPTD	9	Unmodified	_VAHNDDPTD_					0	0	0		ENSG00000099817|ENST00000615234|POLR2E;ENST00000592597.1_1_19:1093873-1095344:-|nuORF;ENST00000586817.5_1_19:1089487-1094188:-|nuORF	ENSG00000099817|ENST00000615234|POLR2E	ENSG00000099817|ENST00000615234|POLR2E	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	492.206878	982.399203	-0.36946	-0.00018185	0.55657	0.00027395	0.18711	9.2096E-05	492.20712199974713	28.326	0.6065	28.326	28.088	28.694	0	-0.026152	7.1344E-05	NaN	28.487	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23840000			56894	2086	41423	41754							-0.09270051143630553
VAHPERWTKY	10	Unmodified	_VAHPERWTKY_					0	0	0		nc|ENSG00000184281|Q9Y5U2-2|TSSC4;ENSG00000184281|ENST00000333256|TSSC4	nc|ENSG00000184281|Q9Y5U2-2|TSSC4	nc|ENSG00000184281|Q9Y5U2-2|TSSC4	MULTI-SECPEP	A375_MHC_IP_R1	1	429.3033447265625	3	429.559528	1285.65676	0.070573	3.0315E-05	0.30447	0.00013079	0.37504	0.0001611	429.5594665886936	35.775	0.46	35.775	35.522	35.982	0					12	8	2	0	0	0	0.93799	1	11974	11974		0.12286	0.039514	1	1045800			56895	8567	41424	41755	55550	55550					0.025353105202157167
VAHPGFLRS	9	Unmodified	_VAHPGFLRS_					0	0	0		ENST00000552951.6_2_12:105380165-105381978:+|nuORF	ENST00000552951.6_2_12:105380165-105381978:+|nuORF	ENST00000552951.6_2_12:105380165-105381978:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	492.67449951171875	2	492.274701	982.534849	-0.64802	-0.000319	0.73911	0.00036384	0.091088	4.484E-05	492.2751636041692	40.585	0.45777	41.36	41.183	41.641	0.77451					14	8	2	0	0	0	0.69504	1	15042	15042		12.532	0	1	4353000			56896	13394	41425	41756	55551	55551					0.04288313228516927
VAHRAPTL	8	Unmodified	_VAHRAPTL_					0	0	0		ENST00000396008.2_1_22:46447675-46449969:-|nuORF	ENST00000396008.2_1_22:46447675-46449969:-|nuORF	ENST00000396008.2_1_22:46447675-46449969:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	433.1559753417969	2	432.756144	863.497735	-0.12136	-5.252E-05	-0.14835	-6.42E-05	-0.26971	-0.00011672	432.75598558991936	33.573	0.40587	33.573	33.342	33.748	0					10	7	2	0	0	0	0.8824	1	11014	11014		16.942	0	1	2260800			56897	11484	41426	41757	55552	55552					0.06052641682754256
VAIKSGTVAI	10	Unmodified	_VAIKSGTVAI_					0	0	0		RBM47|p.P441S|1|0.49|ENSG00000163694|chr4:40436450-40436450|G/A|missense_variant	RBM47|p.P441S|1|0.49|ENSG00000163694|chr4:40436450-40436450|G/A|missense_variant	RBM47|p.P441S|1|0.49|ENSG00000163694|chr4:40436450-40436450|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	480.2002258300781	2	479.800217	957.585882	-0.42732	-0.00020503	0.2813	0.00013497	-0.14602	-7.006E-05	479.8003319296606	74.18	0.55849	74.18	73.943	74.502	0					18	10	2	0	0	0	0.38158	1	27048	27048		43.858	13.222	1	1260700			56898	15271	41427	41758	55553	55553					0.10539217482721597
VAIQMCWKL	9	Unmodified	_VAIQMCWKL_					0	0	0		nc|ENSG00000160703|Q86UT6-2|NLRX1	nc|ENSG00000160703|Q86UT6-2|NLRX1	nc|ENSG00000160703|Q86UT6-2|NLRX1	MULTI-SECPEP	A375_MHC_IP_R2	2	546.19873046875	2	546.290648	1090.56674	-1.3275	-0.0007252	-3.0409	-0.0016612	-4.3684	-0.0023864	546.289493352369	33.723	0.50628	34.475	34.196	34.702	0.75225					12	9	2	0	0	0	0.65246	1	12003	12003		3.5965	0	1	1940900			56899	14713	41428	41759	55554	55554					0.025082215958036613
VAIRTALL	8	Unmodified	_VAIRTALL_					0	0	0			REV__ENSG00000127419|ENST00000264771|TMEM175	REV__ENSG00000127419|ENST00000264771|TMEM175	MULTI-SECPEP	A375_MHC_IP_R2	2	429.18414306640625	2	428.78437	855.554188	-0.045081	-1.933E-05	0.30256	0.00012973	0.25747	0.0001104	428.78439282580575	95.534	0.56079	96.284	96.041	96.602	0.75045					24	10	3	0	0	0	0.73563	1	36268	36268		36.044	0	1	6948200	+		56900	18419	41429	41760	55555	55555					0.12063269519410369
VAIVGGSGSGW	11	Unmodified	_VAIVGGSGSGW_					0	0	0		ENST00000469368.1_1_X:74289115-74291374:-|nuORF	ENST00000469368.1_1_X:74289115-74291374:-|nuORF	ENST00000469368.1_1_X:74289115-74291374:-|nuORF	MSMS	A375_MHC_IP_R1	1	495.16387939453125	2	495.256174	988.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.371	1	52.371	51.871	52.871	0								0	0	0	0.15902	1	18622	18622		14.838	0.25658	1				56901	12314	41430	41761	55556	55556					0.0030859689211411023
VAKDPIVNVW	10	Unmodified	_VAKDPIVNVW_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32688150-32694122:+|nuORF;ENST00000489353.5_1_1:32688042-32691823:+|nuORF	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-SECPEP	A375_MHC_IP_R1	1	571.2239379882812	2	570.824224	1139.63389	-0.1081	-6.1704E-05	-0.45693	-0.00026083	-0.56503	-0.00032253	570.8239992690895	78.89	0.76053	78.89	78.556	79.316	0					26	14	3	0	0	0	0.32288	1	28777	28777		59.368	33.1	1	4080000			56902	1797	41431	41762	55557	55557					0.06966291402750358
VAKDPIVNVW	10	Unmodified	_VAKDPIVNVW_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32688150-32694122:+|nuORF;ENST00000489353.5_1_1:32688042-32691823:+|nuORF	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-SECPEP	A375_MHC_IP_R2	2	571.2236938476562	2	570.824224	1139.63389	-0.28671	-0.00016366	-0.17676	-0.0001009	-0.46348	-0.00026456	570.8240639755137	78.052	0.66553	78.795	78.365	79.031	0.74293					21	12	3	0	0	0	0.57412	1	29614	29614		43.982	17.714	1	3556000			56903	1797	41431	41762	55558	55558					0.06966291402750358
VAKDVRQYI	9	Unmodified	_VAKDVRQYI_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-SECPEP	A375_MHC_IP_R2	2	546.6807861328125	2	546.314023	1090.61349	-0.78598	-0.00042939	0.12646	6.909E-05	-0.65951	-0.0003603	546.3139890125547	41.858	0.30632	42.633	42.453	42.759	0.77451					9	5	3	0	0	0	0.65246	1	15483	15483		10.824	4.1008	1	2960900	+		56904	17121	41432	41763	55559	55559					0.07181120742939129
VAKHPKNPEV	10	Unmodified	_VAKHPKNPEV_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-SECPEP	A375_MHC_IP_R2	2	560.2190551757812	2	559.819473	1117.62439	-0.55537	-0.00031091	-0.13094	-7.3301E-05	-0.68631	-0.00038421	559.8193801413016	68.24	0.56041	68.976	68.56	69.121	0.73511					16	10	2	0	0	0	0.90853	1	25834	25834		3.5965	0	1	2449300			56905	4801	41433	41764	55560	55560					0.07028523117219265
VAKIVKKLY	9	Unmodified	_VAKIVKKLY_					0	0	0		tr|U7T1G7|U7T1G7_FUSNUCinA-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00638PE=3SV=1	tr|U7T1G7|U7T1G7_FUSNUCinA-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00638PE=3SV=1	tr|U7T1G7|U7T1G7_FUSNUCinA-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00638PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	1061.2073974609375	1	1061.70813	1060.70085	0.058567	6.2182E-05	2.9089	0.0030884	2.9675	0.0031506	1062.7167648045152	119.39	0.45747	119.39	119.18	119.64	0					10	8	2	0	0	0	0.81122	1	44064	44064		2.3027	0	1	14124000			56906	29905	41434	41765	55561	55561					0.17292946684528943
VAKKEKIV	8	Unmodified	_VAKKEKIV_					0	0	0			REV__ENST00000502495.1_1_4:129805634-129873545:-|nuORF	REV__ENST00000502495.1_1_4:129805634-129873545:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	458.2049560546875	2	457.805303	913.596052	-0.14659	-6.7109E-05	0.50023	0.00022901	0.35364	0.0001619	457.80542917532176	96.932	0.55737	96.932	96.68	97.238	0					23	10	3	0	0	0	0.972	1	35600	35600		2.3027	0.24298	1	2487700	+		56907	19754	41435	41766	55562	55562					0.13579825207932572
VAKKYISGIR	10	Unmodified	_VAKKYISGIR_					0	0	0			REV__ENSG00000181333|ENST00000315765|HEPHL1	REV__ENSG00000181333|ENST00000315765|HEPHL1	MULTI-SECPEP	A375_MHC_IP_R1	1	567.2147827148438	2	567.853316	1133.69208	-0.2027	-0.0001151	4.0239	0.002285	3.8212	0.0021699	568.3575744167065	92.21	0.20155	92.21	92.11	92.312	0					5	3	2	0	0	0	0.93961	1	33883	33883		1.3295	0.72803	1	1065400	+		56908	21645	41436	41767	55563	55563					0.1305797304803491
VAKLILVNF	9	Unmodified	_VAKLILVNF_					0	0	0		ENST00000584680.1_1_18:26231883-26232303:+|nuORF;ENST00000452385.5_1_3:48982572-49020700:+|nuORF;ENSG00000177479|ENST00000356401|ARIH2	ENST00000584680.1_1_18:26231883-26232303:+|nuORF	ENST00000584680.1_1_18:26231883-26232303:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	508.6896057128906	2	508.828778	1015.643	-0.70642	-0.00035945	0.48202	0.00024526	-0.2244	-0.00011418	508.82874557893825	103.84	0.40567	104.6	104.35	104.75	0.76428					9	7	2	0	0	0	0.62767	1	39346	39346		16.942	0	1	665900			56909	8086	41437	41768	55564	55564					0.13580684759074302
VAKPNIGENW	10	Unmodified	_VAKPNIGENW_					0	0	0		ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-SECPEP	A375_MHC_IP_R2	2	563.6644897460938	2	564.29583	1126.57711	-0.66451	-0.00037498	0.86973	0.00049078	0.20521	0.0001158	564.2962966114989	50.362	0.4063	51.117	50.904	51.311	0.75406					11	7	2	0	0	0	0.92295	1	18939	18939		12.873	9.2761	1	1300000			56910	1066	41438	41769	55565	55565					0.018882438462242135
VAKPNIGENW	10	Unmodified	_VAKPNIGENW_					0	0	0		ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MATCH	A375_MHC_IP_R1	1		2	564.29583	1126.57711	-0.34744	-0.00019606	0.15161	8.5555E-05	-0.19583	-0.00011051	564.295799896024	51.09	0.30379	51.09	50.915	51.219	0	-0.013483	-0.00030131	NaN	8.9762	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1978200			56911	1066	41438	41769							0.018882438462242135
VAKQERAIV	9	Unmodified	_VAKQERAIV_					0	0	0			REV__ENSG00000118873|ENST00000358951|RAB3GAP2	REV__ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-SECPEP	A375_MHC_IP_R2	2	507.4427795410156	2	507.308741	1012.60293	-0.97364	-0.00049394	-0.14197	-7.2021E-05	-1.1156	-0.00056596	507.30866858279745	56.173	0.86751	56.923	56.388	57.255	0.75015					27	16	2	0	0	0	0.35487	1	21199	21199		36.127	0	1	7773700	+		56912	18054	41439	41770	55566	55566					0.09713138088511641
VAKQLEKLKKI	11	Unmodified	_VAKQLEKLKKI_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MSMS	A375_MHC_IP_R1	1	433.2847900390625	3	433.290379	1296.84931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.33	1	142.33	141.83	142.83	0								0	0	0	0.16358	1	54613	54613		0.094841	0	1		+		56913	18581	41440	41771	55567	55567					0.2127563286755958
VAKRKLEE	8	Unmodified	_VAKRKLEE_					0	0	0			REV__tr|U7SUG8|U7SUG8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01230PE=3SV=1	REV__tr|U7SUG8|U7SUG8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01230PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	487.12579345703125	2	486.795466	971.57638	-0.94474	-0.0004599	0.74476	0.00036254	-0.19999	-9.7353E-05	486.79570877722745	22.815	0.3566	23.445	23.113	23.47	0.63014					9	6	2	0	0	0	0.972	1	7242	7242		4.3292	0	1	1230700	+		56914	28558	41441	41772	55568	55568					0.08945449197187827
VAKVGQYTF	9	Unmodified	_VAKVGQYTF_					0	0	0		ENST00000593233.1_1_19:5894755-5901370:-|nuORF;ENSG00000174886|ENST00000308961|NDUFA11;nc|ENSG00000174886|Q86Y39-2|NDUFA11	ENST00000593233.1_1_19:5894755-5901370:-|nuORF	ENST00000593233.1_1_19:5894755-5901370:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.1763610839844	2	506.776742	1011.53893	-0.49898	-0.00025287	0.027508	1.3941E-05	-0.47148	-0.00023893	506.7767240477045	52.668	0.60995	52.668	52.387	52.997	0					29	11	3	0	0	0	0.034037	1	18744	18744		88.954	39.021	1	14256000			56915	7912	41442	41773	55569	55569					0.03362357931553106
VAKVGQYTF	9	Unmodified	_VAKVGQYTF_					0	0	0		ENST00000593233.1_1_19:5894755-5901370:-|nuORF;ENSG00000174886|ENST00000308961|NDUFA11;nc|ENSG00000174886|Q86Y39-2|NDUFA11	ENST00000593233.1_1_19:5894755-5901370:-|nuORF	ENST00000593233.1_1_19:5894755-5901370:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	507.17626953125	2	506.776742	1011.53893	-1.052	-0.00053313	0.03487	1.7672E-05	-1.0171	-0.00051546	506.77677300312143	51.914	0.66094	52.666	52.372	53.032	0.75225					31	12	3	0	0	0	0.059859	1	19525	19525		62.573	12.64	1	13595000			56916	7912	41442	41773	55570	55570					0.03362357931553106
VAKVIRALLRI	11	Unmodified	_VAKVIRALLRI_					0	0	0		ENSG00000149218|ENST00000278505|ENDOD1	ENSG00000149218|ENST00000278505|ENDOD1	ENSG00000149218|ENST00000278505|ENDOD1	MSMS	A375_MHC_IP_R1	1	417.95745849609375	3	417.958963	1250.85506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.65	1	23.65	23.15	24.15	0								0	0	0	0.16331	1	6538	6538		0.50596	0	1				56917	5789	41443	41774	55571	55571					0.23966776169868353
VAKVRSFTP	9	Unmodified	_VAKVRSFTP_					0	0	0		nc|ENSG00000150347|Q14865-3|ARID5B	nc|ENSG00000150347|Q14865-3|ARID5B	nc|ENSG00000150347|Q14865-3|ARID5B	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1976318359375	2	502.798009	1003.58147	-0.58421	-0.00029374	-0.415	-0.00020866	-0.9992	-0.0005024	502.79764500514096	41.991	0.61368	42.766	42.555	43.169	0.77451					19	11	2	0	0	0	0.41434	1	15618	15618		39.95	0	1	7222200			56918	14676	41444	41775	55572	55572					0.07981753059812036
VAKWFAQTW	9	Unmodified	_VAKWFAQTW_					0	0	0			REV__nc|ENSG00000171885|P55087-2|AQP4	REV__nc|ENSG00000171885|P55087-2|AQP4	MULTI-SECPEP	A375_MHC_IP_R2	2	379.26568603515625	3	379.534431	1135.58147	-0.39233	-0.0001489	2.4121	0.00091548	2.0198	0.00076658	379.5348079701759	56.785	0.15345	57.535	57.459	57.612	0.75015					4	2	2	0	0	0	0.77834	1	21484	21484		2.7352	2.5953	1	782670	+		56919	21107	41445	41776	55573	55573					0.01909753059794639
VAKWQVEYM	9	Unmodified	_VAKWQVEYM_					0	0	0			REV__KIT|p.V559A|3|0.28|ENSG00000157404|chr4:54727444-54727444|T/C|missense_variant	REV__KIT|p.V559A|3|0.28|ENSG00000157404|chr4:54727444-54727444|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	384.60137939453125	3	385.195198	1152.56377	0.43901	0.00016911	3.6135	0.0013919	4.0525	0.001561	385.1961086389015	39.263	0.3067	39.263	39.033	39.34	0					6	5	2	0	0	0	0.76187	1	13422	13422		2.2828	0	1	734220	+		56920	26854	41446	41777	55574	55574					-0.006413302573719193
VALARALIRK	10	Unmodified	_VALARALIRK_					0	0	0		ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1	ENSG00000168394|ENST00000354258|TAP1	ENSG00000168394|ENST00000354258|TAP1	MSMS	A375_MHC_IP_R2	2	555.6836547851562	2	555.877125	1109.7397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.421	1	45.19	44.69	45.69	0.7691								0	0	0	0.15585	1	16578	16578		1.8442	0	1				56921	7295	41447	41778	55575	55575					0.18921672038891302
VALATWSWYEW	11	Unmodified	_VALATWSWYEW_					0	0	0			REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF	REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	706.7374877929688	2	706.337695	1410.66084	-0.7683	-0.00054268	0.97936	0.00069176	0.21106	0.00014908	706.3384861035747	72.903	0.40651	73.638	73.379	73.785	0.7354					16	7	3	0	0	0	0.98591	1	27675	27675		13.906	0	1	2047200	+		56922	23404	41448	41779	55576	55576					-0.028066447767287173
VALCPKGG	8	Unmodified	_VALCPKGG_					0	0	0			REV__ENST00000416961.6_1_8:74888433-74888517:+|nuORF	REV__ENST00000416961.6_1_8:74888433-74888517:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	744.305419921875	1	744.407272	743.399995	-0.50251	-0.00037407	-0.099799	-7.4291E-05	-0.60231	-0.00044837	744.4078302990121	128.72	0.20396	128.72	128.58	128.79	0					5	3	2	0	0	0	0.972	1	49482	49482		6.3541	3.4649	1	4948700	+		56923	24540	41449	41780	55577	55577					0.018031167624030786
VALCTTIVV	9	Carbamidomethyl (C)	_VALC(Carbamidomethyl (C))TTIVV_	VALC(1)TTIVV		VALC(40)TTIVV		0	1	0			REV__ENSG00000011083|ENST00000230671|SLC6A7	REV__ENSG00000011083|ENST00000230671|SLC6A7	MULTI-MSMS	A375_MHC_IP_R1	1	488.1797180175781	2	488.280803	974.547053	-0.38775	-0.00018933	0.24285	0.00011858	-0.1449	-7.0752E-05	488.28097989091293	65.437	0.46016	65.437	65.206	65.666	0					14	8	2	0	0	0	0.16661	1	23684	23684		40.449	8.1431	1	3733600	+		56924	16202	41450	41781	55578	55578	70				0.058761688566846715
VALCTTIVV	9	Carbamidomethyl (C)	_VALC(Carbamidomethyl (C))TTIVV_	VALC(1)TTIVV		VALC(47)TTIVV		0	1	0			REV__ENSG00000011083|ENST00000230671|SLC6A7	REV__ENSG00000011083|ENST00000230671|SLC6A7	MULTI-SECPEP	A375_MHC_IP_R1	1	488.4693603515625	2	488.280803	974.547053	-0.38775	-0.00018933	0.24285	0.00011858	-0.1449	-7.0752E-05	488.28097989091293	65.437	0.46016	65.437	65.206	65.666	0					14	8	2	0	0	0	0.28418	1	23744	23744		46.921	10.794	1	3733600	+		56925	16202	41450	41781	55579	55579	70				0.058761688566846715
VALCTTIVV	9	Carbamidomethyl (C)	_VALC(Carbamidomethyl (C))TTIVV_	VALC(1)TTIVV		VALC(54)TTIVV		0	1	0			REV__ENSG00000011083|ENST00000230671|SLC6A7	REV__ENSG00000011083|ENST00000230671|SLC6A7	MULTI-MSMS	A375_MHC_IP_R2	2	488.6806945800781	2	488.280803	974.547053	-0.51427	-0.00025111	0.36244	0.00017697	-0.15183	-7.4138E-05	488.2810690894803	64.528	0.55955	65.268	64.954	65.513	0.74022					19	10	2	0	0	0	0.083809	1	24474	24474		53.576	9.1686	1	3043600	+		56926	16202	41450	41781	55580	55580	70				0.058761688566846715
VALCVTSTVV	10	Unmodified	_VALCVTSTVV_					0	0	0			REV__ENSG00000145217|ENST00000398516|SLC26A1	REV__ENSG00000145217|ENST00000398516|SLC26A1	MULTI-SECPEP	A375_MHC_IP_R1	1	496.1720275878906	2	496.27826	990.541968	-0.18211	-9.0377E-05	-0.5363	-0.00026616	-0.71841	-0.00035653	496.2775121730354	47.915	0.60505	47.915	47.618	48.223	0					21	11	3	0	0	0	0.43292	1	16839	16839		32.305	0	1	5292400	+		56927	19465	41451	41782	55581	55581					0.046318649940758405
VALCVTSTVV	10	Unmodified	_VALCVTSTVV_					0	0	0			REV__ENSG00000145217|ENST00000398516|SLC26A1	REV__ENSG00000145217|ENST00000398516|SLC26A1	MULTI-SECPEP	A375_MHC_IP_R2	2	496.677490234375	2	496.27826	990.541968	-0.26596	-0.00013199	-0.2557	-0.0001269	-0.52166	-0.00025889	496.277863837327	46.984	0.71263	47.746	47.309	48.022	0.76127					23	13	3	0	0	0	0.43292	1	17631	17631		48.346	12.302	1	5769700	+		56928	19465	41451	41782	55582	55582					0.046318649940758405
VALELFLKLKT	11	Unmodified	_VALELFLKLKT_					0	0	0		ENST00000303236.7_1_2:88879078-88879120:-|nuORF	ENST00000303236.7_1_2:88879078-88879120:-|nuORF	ENST00000303236.7_1_2:88879078-88879120:-|nuORF	MSMS	A375_MHC_IP_R2	2	637.7467041015625	2	637.907756	1273.80096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.985	1	98.745	98.245	99.245	0.75977								0	0	0	0.16297	1	37182	37182		3.2813	0	1				56929	10554	41452	41783	55583	55583					0.17501139227624662
VALFRRQLIRY	11	Unmodified	_VALFRRQLIRY_					0	0	0			REV__nc|ENSG00000042832|P01266-2|TG	REV__nc|ENSG00000042832|P01266-2|TG	MSMS	A375_MHC_IP_R1	1	717.899169921875	2	717.938245	1433.86194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.85	1	125.85	125.35	126.35	0								0	0	0	0.1624	1	47975	47975		6.2058	0	1		+		56930	16348	41453	41784	55584	55584					0.16236089050471492
VALGAVIGV	9	Unmodified	_VALGAVIGV_					0	0	0			REV__ENSG00000234745|ENST00000412585|HLA-B	REV__ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	A375_MHC_IP_R1	1	798.4811401367188	1	798.508366	797.501089	-0.47401	-0.0003785	0.33116	0.00026443	-0.14285	-0.00011407	798.50858869143	119.23	0.40319	119.23	119.03	119.44	0					10	7	2	0	0	0	0.33325	1	44124	44124		28.173	0	1	8457100	+		56931	22754	41454	41785	55585	55585					0.09423891736776113
VALGAVIGV	9	Unmodified	_VALGAVIGV_					0	0	0			REV__ENSG00000234745|ENST00000412585|HLA-B	REV__ENSG00000234745|ENST00000412585|HLA-B	MULTI-SECPEP	A375_MHC_IP_R2	2	797.7843627929688	1	798.508366	797.501089	-0.82612	-0.00065967	2.3669	0.00189	1.5407	0.0012303	798.5092922215415	118.1	0.50621	118.71	118.54	119.05	0.60909					13	9	2	0	0	0	0.4045	1	44829	44829		14.582	0	1	4966800	+		56932	22754	41454	41785	55586	55586					0.09423891736776113
VALGAVIGV	9	Unmodified	_VALGAVIGV_					0	0	0			REV__ENSG00000234745|ENST00000412585|HLA-B	REV__ENSG00000234745|ENST00000412585|HLA-B	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	798.508366	797.501089	-0.47401	-0.0003785	0.33116	0.00026443	-0.14285	-0.00011407	798.50858869143	119.23	0.40319	119.23	119.03	119.44	0	0	0	NaN	28.173	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8457100	+		56933	22754	41454	41785							0.09423891736776113
VALHRQLKFPK	11	Unmodified	_VALHRQLKFPK_					0	0	0			REV__ENSG00000225614|ENST00000565624|ZNF469	REV__ENSG00000225614|ENST00000565624|ZNF469	MULTI-SECPEP	A375_MHC_IP_R2	2	669.3140869140625	2	668.914239	1335.81392	-0.74356	-0.00049738	-0.24207	-0.00016193	-0.98563	-0.00065931	668.9140530409725	83.386	0.71362	84.126	83.898	84.611	0.73962					30	13	3	0	0	0	0.99227	1	31677	31677		5.7319	1.203	1	12883000	+		56934	22715	41455	41786	55587	55587					0.15945015130409956
VALHWLPALSL	11	Unmodified	_VALHWLPALSL_					0	0	0			REV__ENST00000300853.7_1_19:45912205-45912715:-|nuORF	REV__ENST00000300853.7_1_19:45912205-45912715:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	407.5888977050781	3	407.24477	1218.71248	-0.57643	-0.00023475	-1.1267	-0.00045882	-1.7031	-0.00069357	407.2445575102224	53.32	0.45959	54.071	53.842	54.301	0.75105					13	8	2	0	0	0	0.73048	1	20174	20174		8.4443	0.49891	1	2307000	+		56935	23418	41456	41787	55588	55588					0.11187143707843461
VALHWLPALSL	11	Unmodified	_VALHWLPALSL_					0	0	0			REV__ENST00000300853.7_1_19:45912205-45912715:-|nuORF	REV__ENST00000300853.7_1_19:45912205-45912715:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	407.24477	1218.71248	-0.087169	-3.5499E-05	-2.5844	-0.0010525	-2.6716	-0.001088	407.2438219501493	54.35	0.3531	54.35	54.163	54.516	0	0.13965	-0.00016545	NaN	8.4443	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1942900	+		56936	23418	41456	41787							0.11187143707843461
VALHWLPALSL	11	Unmodified	_VALHWLPALSL_					0	0	0			REV__ENST00000300853.7_1_19:45912205-45912715:-|nuORF	REV__ENST00000300853.7_1_19:45912205-45912715:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	407.24477	1218.71248	-0.57643	-0.00023475	-1.1267	-0.00045882	-1.7031	-0.00069357	407.2445575102224	53.32	0.45959	54.071	53.842	54.301	0.75105	-0.13965	0.0016156	NaN	8.4443	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2307000	+		56937	23418	41456	41787							0.11187143707843461
VALILLILLVP	11	Unmodified	_VALILLILLVP_					0	0	0		nc|ENSG00000182557|Q6ZMD2-2|SPNS3;ENSG00000182557|ENST00000355530|SPNS3	nc|ENSG00000182557|Q6ZMD2-2|SPNS3	nc|ENSG00000182557|Q6ZMD2-2|SPNS3	MSMS	A375_MHC_IP_R1	1	589.149658203125	2	588.920135	1175.82572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.406	1	98.406	97.906	98.906	0								0	0	0	0.1629	1	36156	36156		3.5965	2.1146	1				56938	8418	41457	41788	55589	55589					0.24483819101033077
VALKQHLGVY	10	Unmodified	_VALKQHLGVY_					0	0	0			REV__ENST00000503906.1_1_6:86322551-86322596:-|nuORF	REV__ENST00000503906.1_1_6:86322551-86322596:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	564.6185913085938	2	564.332216	1126.64988	-0.84361	-0.00047607	0.03859	2.1778E-05	-0.80502	-0.0004543	564.8337990970917	36.563	0.35565	37.334	37.157	37.513	0.7709					8	6	2	0	0	0	0.93799	1	13288	13288		3.5965	0	1	1904000	+		56939	25524	41458	41789	55590	55590					0.09161997639671426
VALLALLKW	9	Unmodified	_VALLALLKW_					0	0	0		ENSG00000059377|ENST00000448866|TBXAS1;nc|ENSG00000059377|P24557-3|TBXAS1;ENST00000476637.5_1_7:139529186-139636014:+|nuORF;ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-4|TBXAS1	ENSG00000059377|ENST00000448866|TBXAS1	ENSG00000059377|ENST00000448866|TBXAS1	MSMS	A375_MHC_IP_R1	1	514.0089721679688	2	513.839146	1025.66374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.473	1	51.473	50.973	51.973	0								0	0	0	0.15486	1	18272	18272		5.2307	0	1				56940	1300	41459	41790	55591	55591					0.15193275138767603
VALLRVTPF	9	Unmodified	_VALLRVTPF_					0	0	0		ENST00000354833.7_1_5:70213930-70214023:+|nuORF;ENSG00000175768|ENST00000321301|TOMM5	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	508.7186279296875	2	508.318577	1014.6226	-0.34793	-0.00017686	-0.05444	-2.7673E-05	-0.40237	-0.00020453	508.3185516021751	101.52	2.3318	101.52	101.19	103.52	0					113	45	5	0	0	0	0.0096896	2	37257	37257;37456		110.67	44.218	1	156250000			56941	7981	41460	41791	55592;55593	55592					0.11587514099267082
VALLRVTPF	9	Unmodified	_VALLRVTPF_					0	0	0		ENST00000354833.7_1_5:70213930-70214023:+|nuORF;ENSG00000175768|ENST00000321301|TOMM5	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	508.7181091308594	2	508.318577	1014.6226	-0.57034	-0.00028992	0.19445	9.8841E-05	-0.3759	-0.00019108	508.3186697913778	100.55	2.3971	101.31	100.93	103.33	0.76278					117	46	5	0	0	0	0.015356	2	38072	38072;38275		89.401	41.652	1	152080000			56942	7981	41460	41791	55594;55595	55594					0.11587514099267082
VALMLGRL	8	Unmodified	_VALMLGRL_					0	0	0			REV__ENSG00000140675|ENST00000330498|SLC5A2	REV__ENSG00000140675|ENST00000330498|SLC5A2	MSMS	A375_MHC_IP_R1	1	436.4107360839844	2	436.772948	871.531344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.082	1	18.082	17.582	18.582	0								0	0	0	0.16876	1	4286	4286		0	0	1		+		56943	19226	41461	41792	55596	55596					0.09043927130312568
VALQRKTF	8	Unmodified	_VALQRKTF_					0	0	0			REV__ENST00000464036.5_1_1:1190585-1197670:-|nuORF	REV__ENST00000464036.5_1_1:1190585-1197670:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	481.1428527832031	2	481.792727	961.5709	-0.19888	-9.5818E-05	-0.044237	-2.1313E-05	-0.24312	-0.00011713	481.7925239281169	42.612	0.30321	42.612	42.436	42.739	0					9	5	2	0	0	0	0.97144	1	14808	14808		5.2307	0	1	1682300	+		56944	20145	41462	41793	55597	55597					0.0885777040538187
VALRAQRV	8	Unmodified	_VALRAQRV_					0	0	0		ENST00000402192.6_1_11:47296295-47296511:+|nuORF	ENST00000402192.6_1_11:47296295-47296511:+|nuORF	ENST00000402192.6_1_11:47296295-47296511:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	457.1901550292969	2	456.790518	911.566484	-0.36274	-0.00016569	0.13862	6.332E-05	-0.22412	-0.00010237	456.79053396925326	27.023	0.30782	27.697	27.582	27.889	0.67348					9	5	2	0	0	0	0.94479	1	9237	9237		19.439	4.8573	1	1580800			56945	11563	41463	41794	55598	55598					0.10716305982464291
VALRAQRV	8	Unmodified	_VALRAQRV_					0	0	0		ENST00000402192.6_1_11:47296295-47296511:+|nuORF	ENST00000402192.6_1_11:47296295-47296511:+|nuORF	ENST00000402192.6_1_11:47296295-47296511:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	456.790518	911.566484	-0.43102	-0.00019689	0.67936	0.00031033	0.24834	0.00011344	456.7908309406667	27.777	0.4033	27.777	27.634	28.037	0	0.040244	0.00022659	NaN	24.674	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2289700			56946	11563	41463	41794							0.10716305982464291
VALREIRRY	9	Unmodified	_VALREIRRY_					0	0	0		nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000197153|ENST00000359303|H3C12;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000203852|ENST00000403683|H3C15;ENSG00000203811|ENST00000369158|H3C14;ENSG00000273983|ENST00000614378|H3C8;ENSG00000183598|ENST00000331491|H3C13;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000168148|ENST00000366696|H3-4;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000197409|ENST00000356476|H3C4;ENSG00000188375|ENST00000340398|H3-5;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000497682.1_1_3:109128527-109128830:-|nuORF	nc|ENSG00000273213|Q5TEC6|H3-7	nc|ENSG00000273213|Q5TEC6|H3-7	MULTI-MSMS	A375_MHC_IP_R1	1	392.9715881347656	3	392.571768	1174.69348	-0.22531	-8.845E-05	0.16851	6.6152E-05	-0.056801	-2.2298E-05	392.5717808900749	26.367	0.55827	26.367	26.118	26.677	0					24	10	3	0	0	0	0.41879	2	7846	7846;7892		23.79	12.99	1	8177200			56947	14936	41464	41795	55599;55600	55599					0.11311607136804014
VALREIRRY	9	Unmodified	_VALREIRRY_					0	0	0		nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000197153|ENST00000359303|H3C12;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000203852|ENST00000403683|H3C15;ENSG00000203811|ENST00000369158|H3C14;ENSG00000273983|ENST00000614378|H3C8;ENSG00000183598|ENST00000331491|H3C13;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000168148|ENST00000366696|H3-4;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000197409|ENST00000356476|H3C4;ENSG00000188375|ENST00000340398|H3-5;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000497682.1_1_3:109128527-109128830:-|nuORF	nc|ENSG00000273213|Q5TEC6|H3-7	nc|ENSG00000273213|Q5TEC6|H3-7	MULTI-SECPEP	A375_MHC_IP_R2	2	392.97174072265625	3	392.571768	1174.69348	-0.6433	-0.00025254	0.43617	0.00017123	-0.20713	-8.1312E-05	392.57195241881595	25.658	0.55791	26.318	26.044	26.602	0.65992					24	10	3	0	0	0	0.72623	1	8635	8635		13.615	6.5778	1	5388900			56948	14936	41464	41795	55601	55601					0.11311607136804014
VALRTPSSL	9	Unmodified	_VALRTPSSL_					0	0	0			REV__ENSG00000134962|ENST00000257408|KLB	REV__ENSG00000134962|ENST00000257408|KLB	MULTI-SECPEP	A375_MHC_IP_R2	2	472.1302795410156	2	472.282192	942.549831	-0.54746	-0.00025856	0.30171	0.00014249	-0.24575	-0.00011606	472.2821587986357	73.177	0.25513	73.913	73.734	73.99	0.73541					6	4	2	0	0	0	0.4261	1	27755	27755		37.974	1.847	1	706110	+		56949	18814	41465	41796	55602	55602					0.0762576030585933
VALSQLPRQL	10	Unmodified	_VALSQLPRQL_					0	0	0			REV__ENST00000377893.2_1_1:6307920-6308091:-|nuORF	REV__ENST00000377893.2_1_1:6307920-6308091:-|nuORF	MSMS	A375_MHC_IP_R1	1	562.6932373046875	2	562.842948	1123.67134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.3	1	128.3	127.8	128.8	0								0	0	0	0.15348	1	49253	49253		15.847	4.2069	1		+		56950	24167	41466	41797	55603	55603					0.11445382668375714
VALSQSQSL	9	Unmodified	_VALSQSQSL_					0	0	0			REV__ENST00000478158.5_1_16:30376465-30376522:-|nuORF	REV__ENST00000478158.5_1_16:30376465-30376522:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	467.1557922363281	2	466.756007	931.497461	-0.031915	-1.4896E-05	0.091522	4.2718E-05	0.059607	2.7822E-05	466.7560341069989	127.95	0.2506	127.95	127.82	128.07	0					6	4	2	0	0	0	0.077132	1	49128	49128		54.774	54.774	1	20869000	+		56951	25206	41467	41798	55604	55604					0.028971771722467565
VALTTDTYY	9	Unmodified	_VALTTDTYY_					0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	MULTI-SECPEP	A375_MHC_IP_R1	1	523.6978149414062	2	523.755672	1045.49679	-0.36331	-0.00019029	1.6639	0.00087149	1.3006	0.0006812	524.2589544659481	56.383	0.45611	56.383	56.092	56.548	0					18	7	3	0	0	0	0.67221	1	20109	20109		8.5933	0	1	1617900	+		56952	16329	41468	41799	55605	55605					-0.02413662267485961
VALVEEPV	8	Unmodified	_VALVEEPV_					0	0	0			REV__ENST00000578795.1_1_17:28576037-28576226:-|nuORF	REV__ENST00000578795.1_1_17:28576037-28576226:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	428.3253173828125	2	428.244744	854.474934	-0.10579	-4.5305E-05	0.035769	1.5318E-05	-0.070023	-2.9987E-05	428.24475505175275	133.97	0.2016	134.13	134.01	134.21	0.16487					6	3	2	0	0	0	0.94479	1	52661	52661		19.439	0	1	1841700	+		56953	17540	41469	41800	55606	55606					0.041875777746213316
VALVEEPV	8	Unmodified	_VALVEEPV_					0	0	0			REV__ENST00000578795.1_1_17:28576037-28576226:-|nuORF	REV__ENST00000578795.1_1_17:28576037-28576226:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	428.244744	854.474934	-0.40242	-0.00017234	-0.17731	-7.5931E-05	-0.57973	-0.00024827	428.24470501664894	134.11	0.30611	134.11	133.91	134.22	0	-0.014436	-0.00017462	NaN	19.439	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1647600	+		56954	17540	41469	41800							0.041875777746213316
VALVFKIKR	9	Unmodified	_VALVFKIKR_					0	0	0			REV__tr|U7T2H0|U7T2H0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00449PE=4SV=1	REV__tr|U7T2H0|U7T2H0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00449PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	358.58538818359375	3	358.577972	1072.71209	-0.20641	-7.4015E-05	0.1193	4.278E-05	-0.087108	-3.1235E-05	358.5782751060427	41.806	0.15433	42.581	42.504	42.659	0.77451					4	2	2	0	0	0	0.71977	1	15526	15526		2.9952	0	1	614480	+		56955	28741	41470	41801	55607	55607					0.1786376877867042
VALVHPDL	8	Unmodified	_VALVHPDL_					0	0	0		ENSG00000242372|ENST00000374450|EIF6	ENSG00000242372|ENST00000374450|EIF6	ENSG00000242372|ENST00000374450|EIF6	MULTI-MSMS	A375_MHC_IP_R1	1	432.6526794433594	2	432.252903	862.491253	-0.19243	-8.3181E-05	0.0059471	2.5706E-06	-0.18649	-8.061E-05	432.2528097814575	61.407	0.5607	61.407	61.126	61.686	0					23	10	3	0	0	0	0.17015	1	22097	22097		70.716	7.1527	1	14712000			56956	9796	41471	41802	55608	55608					0.05450703731378326
VALVHPDL	8	Unmodified	_VALVHPDL_					0	0	0		ENSG00000242372|ENST00000374450|EIF6	ENSG00000242372|ENST00000374450|EIF6	ENSG00000242372|ENST00000374450|EIF6	MULTI-MSMS	A375_MHC_IP_R2	2	432.65277099609375	2	432.252903	862.491253	-0.53568	-0.00023155	0.066238	2.8632E-05	-0.46944	-0.00020292	432.25288974663874	60.513	0.66293	61.258	60.903	61.566	0.74503					29	12	3	0	0	0	0.24409	1	22867	22867		63.563	7.0216	1	13300000			56957	9796	41471	41802	55609	55609					0.05450703731378326
VALVLLLLLVP	11	Unmodified	_VALVLLLLLVP_					0	0	0			REV__ENSG00000157227|ENST00000311852|MMP14	REV__ENSG00000157227|ENST00000311852|MMP14	MSMS	A375_MHC_IP_R2	2	581.8372802734375	2	581.91231	1161.81007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.011	1	85.747	85.247	86.247	0.73601								0	0	0	0.16353	1	32318	32318		0.35063	0	1		+		56958	20021	41472	41803	55610	55610					0.23563532584012137
VAMPVRETNPW	11	Unmodified	_VAMPVRETNPW_					0	0	0		nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB	nc|ENSG00000133961|P49757-3|NUMB	nc|ENSG00000133961|P49757-3|NUMB	MSMS	A375_MHC_IP_R2	2	433.6040344238281	3	433.888657	1298.64414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.027	1	57.777	57.277	58.277	0.75015								0	0	0	0.1629	1	21561	21561		1.4551	0	1				56959	4537	41473	41804	55611	55611					0.006765310656646761
VAMYREPSL	9	Unmodified	_VAMYREPSL_					0	0	0		nc|ENSG00000102466|Q92915-2|FGF14;ENSG00000102466|ENST00000376143|FGF14	nc|ENSG00000102466|Q92915-2|FGF14	nc|ENSG00000102466|Q92915-2|FGF14	MULTI-MSMS	A375_MHC_IP_R1	1	533.6747436523438	2	533.273509	1064.53247	-0.41463	-0.00022111	2.2668	0.0012088	1.8521	0.0009877	533.2748269477789	92.554	0.40663	92.554	92.261	92.668	0					18	7	3	0	0	0	0.22528	1	34012	34012		36.127	3.8215	1	2380800			56960	14518	41475	41805	55612	55612					0.00278096708530029
VANDYARQL	9	Unmodified	_VANDYARQL_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1;ENST00000466794.5_1_19:12767171-12772081:-|nuORF	nc|ENSG00000104774|O00754-2|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-SECPEP	A375_MHC_IP_R1	1	525.6608276367188	2	525.272355	1048.53016	-0.54254	-0.00028498	0.061165	3.2128E-05	-0.48138	-0.00025286	525.2721168640247	34.466	0.55478	34.466	34.103	34.657	0					16	10	2	0	0	0	0.20059	1	11372	11372		59.368	21.394	1	3081400			56961	2535	41476	41806	55613	55613					0.00783384295095857
VANDYARQL	9	Unmodified	_VANDYARQL_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1;ENST00000466794.5_1_19:12767171-12772081:-|nuORF	nc|ENSG00000104774|O00754-2|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-SECPEP	A375_MHC_IP_R2	2	525.660888671875	2	525.272355	1048.53016	-1.0178	-0.00053461	-0.21787	-0.00011444	-1.2356	-0.00064905	525.2720332683898	33.772	0.45505	34.525	34.298	34.753	0.75225					15	8	2	0	0	0	0.20059	1	12169	12169		59.368	21.394	1	3664800			56962	2535	41476	41806	55614	55614					0.00783384295095857
VANFFPKKL	9	Unmodified	_VANFFPKKL_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-SECPEP	A375_MHC_IP_R2	2	355.1039733886719	3	355.21481	1062.6226	-0.45948	-0.00016322	0.71545	0.00025414	0.25597	9.0924E-05	355.2147282055434	54.307	0.55643	55.058	54.865	55.422	0.75075					23	10	3	0	0	0	0.76827	1	20463	20463		7.1017	4.8189	1	1371200			56963	4331	41477	41807	55615	55615					0.0937951409928246
VANIIQPV	8	Unmodified	_VANIIQPV_					0	0	0		ENSG00000189357|ENST00000419782|SPATA31D4;ENSG00000186788|ENST00000445385|SPATA31D3	ENSG00000189357|ENST00000419782|SPATA31D4	ENSG00000189357|ENST00000419782|SPATA31D4	MULTI-SECPEP	A375_MHC_IP_R2	2	426.6627197265625	2	427.260728	852.506903	-0.35489	-0.00015163	0.22768	9.728E-05	-0.12721	-5.435E-05	427.2607568500244	40.74	0.35611	41.515	41.285	41.641	0.77451					10	6	2	0	0	0	0.972	1	15029	15029		9.3474	0	1	2391500			56964	8775	41478	41808	55616	55616					0.07474990248431368
VANLLKSAFPH	11	Unmodified	_VANLLKSAFPH_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	A375_MHC_IP_R1	1	599.2422485351562	2	598.842948	1195.67134	-0.27622	-0.00016541	-0.46239	-0.0002769	-0.73861	-0.00044231	598.8426286912395	53.761	0.45774	53.761	53.505	53.962	0					15	8	2	0	0	0	0.97182	1	19185	19185		18.373	6.1324	1	2773700			56965	1768	41479	41809	55617	55617					0.08133382668370359
VANQRIEF	8	Unmodified	_VANQRIEF_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant;HMCN1|p.P2051Lfs*3|1|0.45|ENSG00000143341|chr1:186039851-186039861|CTGTTTCTAGT/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	A375_MHC_IP_R1	1	489.1639709472656	2	488.764166	975.513779	-0.18179	-8.8852E-05	-0.2995	-0.00014639	-0.48129	-0.00023524	488.7640172966039	42.336	0.40479	42.336	42.082	42.487	0					12	7	2	0	0	0	0.5161	1	14693	14693		62.573	28.47	1	2630900			56966	5371	41480	41810	55618	55618					0.025043031289897044
VANQRIEF	8	Unmodified	_VANQRIEF_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant;HMCN1|p.P2051Lfs*3|1|0.45|ENSG00000143341|chr1:186039851-186039861|CTGTTTCTAGT/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	A375_MHC_IP_R2	2	489.1636047363281	2	488.764166	975.513779	-0.71101	-0.00034751	0.070464	3.444E-05	-0.64054	-0.00031307	488.76408844743827	41.449	0.40548	42.223	42.047	42.453	0.77451					12	7	2	0	0	0	0.37815	1	15395	15395		62.573	35.689	1	2931100			56967	5371	41480	41810	55619	55619					0.025043031289897044
VAPAFRGR	8	Unmodified	_VAPAFRGR_					0	0	0			REV__ENST00000457336.1_1_2:113402667-113403246:-|nuORF	REV__ENST00000457336.1_1_2:113402667-113403246:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	873.9047241210938	1	873.505346	872.49807	-0.63515	-0.00055481	0.040877	3.5707E-05	-0.59428	-0.0005191	873.5052005785267	144.48	0.075043	144.48	144.43	144.51	0					5	3	2	0	0	0	0.77839	1	55414	55414		0.79363	0	1	277250	+		56968	24942	41481	41811	55620	55620					0.05672061402606232
VAPAFRGR	8	Unmodified	_VAPAFRGR_					0	0	0			REV__ENST00000457336.1_1_2:113402667-113403246:-|nuORF	REV__ENST00000457336.1_1_2:113402667-113403246:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	873.505346	872.49807	-0.63515	-0.00055481	0.040877	3.5707E-05	-0.59428	-0.0005191	873.5052005785267	144.48	0.075043	144.48	144.43	144.51	0	-0.028977	1.4735E-05	NaN	0.79363	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	277250	+		56969	24942	41481	41811							0.05672061402606232
VAPAFRGR	8	Unmodified	_VAPAFRGR_					0	0	0			REV__ENST00000457336.1_1_2:113402667-113403246:-|nuORF	REV__ENST00000457336.1_1_2:113402667-113403246:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	873.505346	872.49807	-0.36806	-0.0003215	-0.0058237	-5.087E-06	-0.37389	-0.00032659	873.5049902153087	144.52	0.10104	144.54	144.46	144.57	0.024414	0.028977	-2.6059E-05	NaN	0.79363	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	336040	+		56970	24942	41481	41811							0.05672061402606232
VAPCPSHL	8	Unmodified	_VAPCPSHL_					0	0	0			REV__ENST00000583487.1_1_17:27186296-27187766:+|nuORF	REV__ENST00000583487.1_1_17:27186296-27187766:+|nuORF	MSMS	A375_MHC_IP_R1	1	412.17620849609375	2	412.210181	822.405809	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.258	1	70.258	69.758	70.758	0								0	0	0	0.16876	1	25506	25506		6.3541	0	1		+		56971	26364	41482	41812	55621	55621					-0.012497847259396622
VAPEEHPVL	9	Unmodified	_VAPEEHPVL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	A375_MHC_IP_R1	1	496.16619873046875	2	495.766374	989.518196	-0.58505	-0.00029005	1.0944	0.00054256	0.50935	0.00025252	495.76699654794703	39.576	0.60735	39.576	39.391	39.999	0					22	11	4	0	0	0	0.1478	1	13568	13568		42.095	4.1206	1	5056700			56972	1615;9064	41483	41813	55622	55622					0.023017675519099612
VAPEEHPVL	9	Unmodified	_VAPEEHPVL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	495.766374	989.518196	-0.75398	-0.0003738	0.69065	0.0003424	-0.063331	-3.1397E-05	495.7666580413762	38.756	0.56332	39.53	39.351	39.914	0.77451	-0.022993	-0.00025688	NaN	42.095	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3801800			56973	1615;9064	41483	41813							0.023017675519099612
VAPEIFVY	8	Unmodified	_VAPEIFVY_					0	0	0		ENSG00000078898|ENST00000170150|BPIFB2	ENSG00000078898|ENST00000170150|BPIFB2	ENSG00000078898|ENST00000170150|BPIFB2	MULTI-MSMS	A375_MHC_IP_R1	1	469.6540832519531	2	469.255111	936.49567	-0.49844	-0.0002339	-0.81961	-0.00038461	-1.3181	-0.0006185	469.2546542164811	25.74	0.40578	25.74	25.511	25.917	0					13	7	2	0	0	0	0.69448	1	7562	7562		36.466	2.0644	1	3431000			56974	1685	41484	41814	55623	55623					0.024881681542865408
VAPFLHGLW	9	Unmodified	_VAPFLHGLW_					0	0	0			REV__ENST00000368489.3_1_1:154321714-154321933:+|nuORF	REV__ENST00000368489.3_1_1:154321714-154321933:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	520.6898193359375	2	520.28982	1038.56509	-0.098504	-5.1251E-05	0.24697	0.0001285	0.14847	7.7245E-05	520.2898100526306	115.28	1.1153	115.28	114.57	115.68	0					48	21	3	0	0	0	0.22067	1	42209	42209		36.466	11.792	1	8938900	+		56975	23995	41485	41815	55624	55624					0.047346718936978505
VAPFLHGLW	9	Unmodified	_VAPFLHGLW_					0	0	0			REV__ENST00000368489.3_1_1:154321714-154321933:+|nuORF	REV__ENST00000368489.3_1_1:154321714-154321933:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	520.6900634765625	2	520.28982	1038.56509	-0.44434	-0.00023118	-0.04351	-2.2638E-05	-0.48785	-0.00025382	520.2896605429981	114.29	0.75978	115	114.63	115.39	0.70985					45	14	4	0	0	0	0.22067	1	43051	43051		36.466	11.067	1	11162000	+		56976	23995	41485	41815	55625	55625					0.047346718936978505
VAPFLHGLW	9	Unmodified	_VAPFLHGLW_					0	0	0			REV__ENST00000368489.3_1_1:154321714-154321933:+|nuORF	REV__ENST00000368489.3_1_1:154321714-154321933:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	520.28982	1038.56509	-0.098504	-5.1251E-05	0.24697	0.0001285	0.14847	7.7245E-05	520.2898100526306	115.28	1.1153	115.28	114.57	115.68	0	0.14037	0.00019931	NaN	36.466	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8938900	+		56977	23995	41485	41815							0.047346718936978505
VAPFLHGLW	9	Unmodified	_VAPFLHGLW_					0	0	0			REV__ENST00000368489.3_1_1:154321714-154321933:+|nuORF	REV__ENST00000368489.3_1_1:154321714-154321933:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	520.28982	1038.56509	-0.44434	-0.00023118	-0.04351	-2.2638E-05	-0.48785	-0.00025382	520.2896605429981	114.29	0.75978	115	114.63	115.39	0.70985	-0.14037	-0.00010296	NaN	36.466	45	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11162000	+		56978	23995	41485	41815							0.047346718936978505
VAPGEQGPDQ	10	Unmodified	_VAPGEQGPDQ_					0	0	0		ENSG00000170385|ENST00000367001|SLC30A1	ENSG00000170385|ENST00000367001|SLC30A1	ENSG00000170385|ENST00000367001|SLC30A1	MSMS	A375_MHC_IP_R1	1	499.18951416015625	2	499.232896	996.451239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.96	1	96.96	96.46	97.46	0								0	0	0	0.15207	1	35629	35629		13.906	2.7916	1				56979	7501	41486	41816	55626	55626					-0.04712887729863269
VAPGVLGI	8	Unmodified	_VAPGVLGI_					0	0	0		nc|ENSG00000117322|P20023-2|CR2;nc|ENSG00000117322|P20023|CR2;nc|ENSG00000117322|P20023-4|CR2;ENSG00000117322|ENST00000367057|CR2	nc|ENSG00000117322|P20023-2|CR2	nc|ENSG00000117322|P20023-2|CR2	MULTI-MSMS	A375_MHC_IP_R1	1	363.63140869140625	2	363.231439	724.448326	0.50357	0.00018291	-0.93603	-0.00034	-0.43246	-0.00015708	363.2311612909307	49.652	0.96763	49.652	49.134	50.101	0					39	18	3	0	0	0	0.76194	1	17551	17551		17.087	0	1	2071800			56980	3473	41487	41817	55627	55627					0.07507933673946354
VAPGVLGI	8	Unmodified	_VAPGVLGI_					0	0	0		nc|ENSG00000117322|P20023-2|CR2;nc|ENSG00000117322|P20023|CR2;nc|ENSG00000117322|P20023-4|CR2;ENSG00000117322|ENST00000367057|CR2	nc|ENSG00000117322|P20023-2|CR2	nc|ENSG00000117322|P20023-2|CR2	MULTI-SECPEP	A375_MHC_IP_R2	2	362.6136779785156	2	363.231439	724.448326	-0.15473	-5.6203E-05	-0.47695	-0.00017324	-0.63168	-0.00022944	363.23120478573816	48.74	1.1162	49.497	48.879	49.995	0.75736					29	21	2	0	0	0	0.85371	1	18255	18255		24.21	0	1	2214100			56981	3473	41487	41817	55628	55628					0.07507933673946354
VAPKHTAK	8	Unmodified	_VAPKHTAK_					0	0	0		nc|ENSG00000138193|Q9P212-2|PLCE1;ENSG00000138193|ENST00000371380|PLCE1	nc|ENSG00000138193|Q9P212-2|PLCE1	nc|ENSG00000138193|Q9P212-2|PLCE1	MULTI-MSMS	A375_MHC_IP_R2	2	426.6583251953125	2	426.25852	850.502486	-0.18946	-8.0758E-05	-0.18436	-7.8585E-05	-0.37382	-0.00015934	426.2584362055875	32.121	0.40753	32.858	32.704	33.112	0.73691					9	7	2	0	0	0	0.76654	1	11433	11433		15.847	1.2655	1	1536000			56982	4971	41488	41818	55629	55629					0.07125525825506429
VAPKHTAK	8	Unmodified	_VAPKHTAK_					0	0	0		nc|ENSG00000138193|Q9P212-2|PLCE1;ENSG00000138193|ENST00000371380|PLCE1	nc|ENSG00000138193|Q9P212-2|PLCE1	nc|ENSG00000138193|Q9P212-2|PLCE1	MULTI-MATCH	A375_MHC_IP_R1	1		2	426.25852	850.502486	-0.31911	-0.00013602	-0.041922	-1.787E-05	-0.36103	-0.00015389	426.25841987622726	32.84	0.25465	32.84	32.734	32.989	0	-0.0088465	7.1635E-05	NaN	15.847	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	947300			56983	4971	41488	41818							0.07125525825506429
VAPKRKRRY	9	Unmodified	_VAPKRKRRY_					0	0	0			REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	A375_MHC_IP_R2	2	392.58380126953125	3	391.915758	1172.72544	-0.49683	-0.00019472	0.32252	0.0001264	-0.17431	-6.8314E-05	391.9159873467914	23.3	0.25271	23.931	23.777	24.029	0.63014					6	4	2	0	0	0	0.81166	1	7490	7490		2.7352	0	1	2164600	+		56984	20541	41489	41819	55630	55630					0.1459901961061405
VAPLTITYV	9	Unmodified	_VAPLTITYV_					0	0	0		nc|ENSG00000171189|P39086-2|GRIK1;nc|ENSG00000171189|P39086|GRIK1;ENSG00000171189|ENST00000327783|GRIK1	nc|ENSG00000171189|P39086-2|GRIK1	nc|ENSG00000171189|P39086-2|GRIK1	MULTI-SECPEP	A375_MHC_IP_R2	2	488.18658447265625	2	488.789318	975.564084	-0.8836	-0.00043189	1.4069	0.00068765	0.52325	0.00025576	488.79017076400964	57.652	0.40771	58.401	58.12	58.528	0.74894					12	7	2	0	0	0	0.77834	1	21744	21744		8.5933	6.9407	1	2842800			56985	7579	41490	41820	55631	55631					0.07532412734121863
VAPLVPIK	8	Unmodified	_VAPLVPIK_					0	0	0			REV__nc|ENSG00000188508|P60985-2|KRTDAP	REV__nc|ENSG00000188508|P60985-2|KRTDAP	MULTI-MSMS	A375_MHC_IP_R1	1	836.7474365234375	1	836.560401	835.553125	-0.36254	-0.00030329	-0.61831	-0.00051725	-0.98085	-0.00082054	836.5623078549086	118.98	0.40592	118.98	118.73	119.13	0					10	7	2	0	0	0	0.77839	1	43813	43813		0.79363	0	1	5767800	+		56986	22095	41491	41821	55632	55632					0.12877055150499928
VAPLVPIK	8	Unmodified	_VAPLVPIK_					0	0	0			REV__nc|ENSG00000188508|P60985-2|KRTDAP	REV__nc|ENSG00000188508|P60985-2|KRTDAP	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	836.560401	835.553125	-0.36254	-0.00030329	-0.61831	-0.00051725	-0.98085	-0.00082054	836.5623078549086	118.98	0.40592	118.98	118.73	119.13	0	0	0	NaN	0.79363	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5767800	+		56987	22095	41491	41821							0.12877055150499928
VAPMDSPLS	9	Unmodified	_VAPMDSPLS_					0	0	0		ENST00000382361.7_1_7:5645159-5645399:+|nuORF	ENST00000382361.7_1_7:5645159-5645399:+|nuORF	ENST00000382361.7_1_7:5645159-5645399:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	459.1260681152344	2	458.725861	915.437169	-0.31138	-0.00014284	0.75096	0.00034448	0.43958	0.00020164	458.7261844686851	103.92	0.35507	104.69	104.4	104.75	0.76428					11	6	2	0	0	0	0.74651	1	39344	39344		0.52476	0	1	1083500			56988	11386	41492	41822	55633	55633					-0.02393256482491779
VAPPKKRR	8	Unmodified	_VAPPKKRR_					0	0	0		nc|ENSG00000136960|Q13822-2|ENPP2	nc|ENSG00000136960|Q13822-2|ENPP2	nc|ENSG00000136960|Q13822-2|ENPP2	MSMS	A375_MHC_IP_R2	2	476.66131591796875	2	476.314161	950.613768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.47	1	112.21	111.71	112.71	0.73692								0	0	0	0.16876	1	42030	42030		0.79363	0	1				56989	14623	41493	41823	55634	55634					0.13648585253463352
VAPPSFASP	9	Unmodified	_VAPPSFASP_					0	0	0			REV__ENST00000426981.5_2_2:128396458-128396839:-|nuORF	REV__ENST00000426981.5_2_2:128396458-128396839:-|nuORF	MSMS	A375_MHC_IP_R1	1	436.6896057128906	2	436.729261	871.443968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.347	1	43.347	42.847	43.847	0								0	0	0	0.1535	1	15063	15063		15.847	1.9411	1		+		56990	24659	41494	41824	55635	55635					0.00310424460383274
VAPPVGQAW	9	Unmodified	_VAPPVGQAW_					0	0	0			REV__ENSG00000173546|ENST00000308508|CSPG4	REV__ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R1	1	462.66900634765625	2	462.750527	923.486502	-0.24151	-0.00011176	0.75778	0.00035066	0.51627	0.0002389	462.7505912484842	57.773	0.50671	57.773	57.568	58.075	0					12	9	2	0	0	0	0.62719	1	20688	20688		13.508	0.97634	1	1324300	+		56991	21229	41495	41825	55636	55636					0.021698195886074245
VAPQAADDHC	10	Unmodified	_VAPQAADDHC_					0	0	0			REV__ENST00000554688.1_1_12:57630046-57630289:-|nuORF	REV__ENST00000554688.1_1_12:57630046-57630289:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	513.6865844726562	2	513.719098	1025.42364	-0.51103	-0.00026252	0.76318	0.00039206	0.25216	0.00012954	513.7195841045201	99.579	0.60684	99.579	99.268	99.875	0					19	11	2	0	0	0	0.70651	2	36619	36619;36640		9.3831	0.78985	1	1473000	+		56992	26082	41496	41826	55637;55638	55637					-0.08805114261758717
VAPRSFPRTI	10	Unmodified	_VAPRSFPRTI_					0	0	0			REV__ENSG00000006638|ENST00000375190|TBXA2R	REV__ENSG00000006638|ENST00000375190|TBXA2R	MULTI-SECPEP	A375_MHC_IP_R2	2	572.2058715820312	2	572.33529	1142.65603	-0.35653	-0.00020406	0.415	0.00023752	0.058469	3.3464E-05	572.334582574459	66.753	0.56117	67.489	67.189	67.75	0.73631					11	10	2	0	0	0	0.88918	1	25220	25220		8.7454	3.8484	1	558240	+		56993	16141	41497	41827	55639	55639					0.09040515871174648
VAPSTGFIVPQ	11	Unmodified	_VAPSTGFIVPQ_					0	0	0			REV__nc|ENSG00000153071|P98082-2|DAB2	REV__nc|ENSG00000153071|P98082-2|DAB2	MULTI-SECPEP	A375_MHC_IP_R1	1	557.7188110351562	2	558.308406	1114.60226	-0.38746	-0.00021632	-1.7932	-0.0010011	-2.1806	-0.0012175	558.3075911097004	51.945	0.50928	51.945	51.728	52.237	0					15	9	3	0	0	0	0.86796	1	18522	18522		20.415	14.209	1	2036400	+		56994	19826	41498	41828	55640	55640					0.04954298648794975
VAPVHRRVTL	10	Unmodified	_VAPVHRRVTL_					0	0	0			REV__ENSG00000164967|ENST00000378959|RPP25L	REV__ENSG00000164967|ENST00000378959|RPP25L	MULTI-MSMS	A375_MHC_IP_R1	1	383.5997009277344	3	383.24013	1146.69856	0.066405	2.5449E-05	0.16336	6.2606E-05	0.22977	8.8055E-05	383.24011208421257	41.7	0.5113	41.7	41.521	42.032	0					13	9	2	0	0	0	0.7154	1	14380	14380		5.4027	1.2132	1	1518000	+		56995	20535	41499	41829	55641	55641					0.13107910999428896
VAPVHRRVTL	10	Unmodified	_VAPVHRRVTL_					0	0	0			REV__ENSG00000164967|ENST00000378959|RPP25L	REV__ENSG00000164967|ENST00000378959|RPP25L	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	383.24013	1146.69856	0.066405	2.5449E-05	0.16336	6.2606E-05	0.22977	8.8055E-05	383.24011208421257	41.7	0.5113	41.7	41.521	42.032	0	0	0	NaN	5.4027	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1518000	+		56996	20535	41499	41829							0.13107910999428896
VAPWNSLSL	9	Unmodified	_VAPWNSLSL_					0	0	0		ENSG00000102265|ENST00000218388|TIMP1;ENST00000456754.6_1_X:47444724-47445414:+|nuORF	ENSG00000102265|ENST00000218388|TIMP1	ENSG00000102265|ENST00000218388|TIMP1	MSMS	A375_MHC_IP_R1	1	493.6868591308594	2	493.768917	985.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.992	1	56.992	56.492	57.492	0								0	0	0	0.11332	1	20430	20430		37.974	1.4678	1				56997	2368	41500	41830	55642	55642					0.029940714145254788
VAQAKREIDF	10	Unmodified	_VAQAKREIDF_					0	0	0		ABT1|p.T182I|1|0.31|ENSG00000146109|chr6:26598371-26598371|C/T|missense_variant	ABT1|p.T182I|1|0.31|ENSG00000146109|chr6:26598371-26598371|C/T|missense_variant	ABT1|p.T182I|1|0.31|ENSG00000146109|chr6:26598371-26598371|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	392.97174072265625	3	392.8839	1175.62987	-0.62805	-0.00024675	0.13884	5.4549E-05	-0.48921	-0.0001922	392.88390469512296	25.986	0.45883	26.645	26.398	26.857	0.65992					12	8	2	0	0	0	0.94363	1	8635	8635		3.0723	2.3746	1	1573100			56998	25	41501	41831	55643	55643					0.049082019090292306
VAQDLLYF	8	Unmodified	_VAQDLLYF_					0	0	0			REV__ACTRT2|p.S139L|1|0.46|ENSG00000169717|chr1:3022102-3022102|C/T|missense_variant	REV__ACTRT2|p.S139L|1|0.46|ENSG00000169717|chr1:3022102-3022102|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	484.6543273925781	2	484.758018	967.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.486	1	23.486	22.986	23.986	0								0	0	0	0.16876	1	6454	6454		10.183	0	1		+		56999	15305	41502	41832	55644	55644					0.01643266665939791
VAQIEALDY	9	Unmodified	_VAQIEALDY_					0	0	0			REV__nc|ENSG00000095539|Q9NTN9-3|SEMA4G	REV__nc|ENSG00000095539|Q9NTN9-3|SEMA4G	MSMS	A375_MHC_IP_R1	1	511.17120361328125	2	511.263665	1020.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.517	1	90.517	90.017	91.017	0								0	0	0	0.12988	1	33265	33265		32.786	0.4802	1		+		57000	27137	41503	41833	55645	55645					0.0033404396941705272
VAQIFLQSF	9	Unmodified	_VAQIFLQSF_					0	0	0			REV__NTPCR|p.R130C|2|0.35|ENSG00000135778|chr1:232970002-232970002|C/T|missense_variant	REV__NTPCR|p.R130C|2|0.35|ENSG00000135778|chr1:232970002-232970002|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	526.7216186523438	2	526.792392	1051.57023	-0.87132	-0.00045901	-0.2168	-0.00011421	-1.0881	-0.00057321	526.7922497294027	37.384	0.30677	38.155	38.02	38.327	0.7709					9	5	2	0	0	0	0.76187	1	13691	13691		7.2892	2.5332	1	2360900	+		57001	18884	41504	41834	55646	55646					0.0465093096563578
VAQIVASH	8	Unmodified	_VAQIVASH_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	A375_MHC_IP_R2	2	412.63037109375	2	412.734877	823.455202	0.0003719	1.535E-07	-1.4279	-0.00058935	-1.4275	-0.0005892	412.73190447727916	106.03	2.3913	106.79	105.97	108.36	0.75977					83	46	3	0	0	0	0.7773	1	40005	40005		4.756	0	1	3269600	+		57002	18137	41505	41835	55647	55647					0.03641246554514055
VAQKFLIQL	9	Unmodified	_VAQKFLIQL_					0	0	0			REV__CFAP54|p.L1654F|1|0.45|ENSG00000188596|chr12:96651675-96651675|C/T|missense_variant	REV__CFAP54|p.L1654F|1|0.45|ENSG00000188596|chr12:96651675-96651675|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	531.0880126953125	2	530.331685	1058.64882	-0.68207	-0.00036172	0.063851	3.3862E-05	-0.61822	-0.00032786	530.3316368902476	97.841	0.40845	98.597	98.381	98.79	0.75587					11	7	2	0	0	0	0.77003	1	37184	37184		11.64	0	1	1138500	+		57003	15648	41506	41836	55648	55648					0.12183783270756976
VAQKFLIQL	9	Unmodified	_VAQKFLIQL_					0	0	0			REV__CFAP54|p.L1654F|1|0.45|ENSG00000188596|chr12:96651675-96651675|C/T|missense_variant	REV__CFAP54|p.L1654F|1|0.45|ENSG00000188596|chr12:96651675-96651675|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	530.331685	1058.64882	-0.56127	-0.00029766	0.25934	0.00013753	-0.30193	-0.00016012	530.3316222221449	98.839	0.30544	98.839	98.659	98.964	0	0.12107	0.00013698	NaN	11.64	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1085300	+		57004	15648	41506	41836							0.12183783270756976
VAQKFQGVGL	10	Unmodified	_VAQKFQGVGL_					0	0	0		OGG1|p.R131G|1|0.25|ENSG00000114026|chr3:9751775-9751775|C/G|missense_variant	OGG1|p.R131G|1|0.25|ENSG00000114026|chr3:9751775-9751775|C/G|missense_variant	OGG1|p.R131G|1|0.25|ENSG00000114026|chr3:9751775-9751775|C/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	524.2030639648438	2	523.803291	1045.59203	-0.52747	-0.00027629	1.1238	0.00058866	0.59636	0.00031237	523.8043039430913	76.611	1.8793	77.351	75.925	77.805	0.74052					84	36	4	0	0	0	0.48072	1	29079	29079		46.021	7.8454	1	19574000			57005	15049	41507	41837	55649	55649					0.0710573571425357
VAQNGSTDI	9	Unmodified	_VAQNGSTDI_					0	0	0			REV__ENSG00000188107|ENST00000503581|EYS	REV__ENSG00000188107|ENST00000503581|EYS	MULTI-SECPEP	A375_MHC_IP_R2	2	453.1214599609375	2	452.722164	903.429775	-0.32887	-0.00014889	-0.85143	-0.00038546	-1.1803	-0.00053435	452.7217702375002	80.869	0.51042	81.614	81.265	81.776	0.74474					12	9	2	0	0	0	0.71541	1	30750	30750		7.2892	0	1	1764800	+		57006	22073	41508	41838	55650	55650					-0.025802727585755747
VAQPWRQGRAW	11	Unmodified	_VAQPWRQGRAW_					0	0	0		ENST00000538198.5_1_11:114310293-114311381:+|nuORF;ENST00000543131.5_1_11:114310293-114316716:+|nuORF	ENST00000538198.5_1_11:114310293-114311381:+|nuORF	ENST00000538198.5_1_11:114310293-114311381:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	451.6585388183594	3	452.242422	1353.70544	-0.71666	-0.00032411	-0.45461	-0.00020559	-1.1713	-0.0005297	452.24239885578936	37.305	1.2224	38.076	37.41	38.632	0.7709					35	23	2	0	0	0	0.99883	1	13581	13581		4.7159	2.4632	1	3540000			57007	13255	41509	41839	55651	55651					0.04273223879999932
VAQQIARLIFS	11	Unmodified	_VAQQIARLIFS_					0	0	0			REV__SCAF1|p.A33S|1|0.12|ENSG00000126461|chr19:49645123-49645123|G/T|missense_variant	REV__SCAF1|p.A33S|1|0.12|ENSG00000126461|chr19:49645123-49645123|G/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	416.3150634765625	3	415.915312	1244.72411	-0.46869	-0.00019493	0.19365	8.0544E-05	-0.27503	-0.00011439	415.9152863009847	25.667	0.91351	26.327	26.044	26.957	0.65992					27	17	2	0	0	0	0.72801	1	8664	8664		8.7518	1.7147	1	2660400	+		57008	27913	41510	41840	55652	55652					0.11153340731175376
VAQVKAISF	9	Unmodified	_VAQVKAISF_					0	0	0		nc|ENSG00000157800|Q8NCC5-3|SLC37A3;nc|ENSG00000157800|Q8NCC5-2|SLC37A3;ENSG00000157800|ENST00000326232|SLC37A3	nc|ENSG00000157800|Q8NCC5-3|SLC37A3	nc|ENSG00000157800|Q8NCC5-3|SLC37A3	MULTI-SECPEP	A375_MHC_IP_R2	2	482.1868896484375	2	481.78711	961.559667	-0.97326	-0.00046891	-0.029773	-1.4344E-05	-1.003	-0.00048325	481.7870728257857	57.166	0.4584	57.916	57.612	58.07	0.75014					14	8	2	0	0	0	0.087712	1	21600	21600		75.761	14.403	1	1783400			57009	6267	41511	41841	55653	55653					0.07734948311235712
VAQVLKYV	8	Unmodified	_VAQVLKYV_					0	0	0		ENST00000465399.5_1_2:242577129-242594780:+|nuORF	ENST00000465399.5_1_2:242577129-242594780:+|nuORF	ENST00000465399.5_1_2:242577129-242594780:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	460.6842346191406	2	460.284203	918.553853	-0.53825	-0.00024775	0.36235	0.00016679	-0.1759	-8.0963E-05	460.2843496404936	67.219	0.56168	67.219	66.938	67.5	0					23	10	3	0	0	0	0.68907	1	24325	24325		38.151	0	1	6558300			57010	12241	41512	41842	55654	55654					0.09131849799564407
VAQYDGNR	8	Unmodified	_VAQYDGNR_					0	0	0			REV__nc|ENSG00000042832|P01266-2|TG	REV__nc|ENSG00000042832|P01266-2|TG	MSMS	A375_MHC_IP_R2	2	461.6372375488281	2	461.722498	921.430444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.895	1	88.627	88.127	89.127	0.7318								0	0	0	0.16876	1	33440	33440		32.117	1.8922	1		+		57011	16348	41513	41843	55655	55655					-0.03341433318860254
VAQYRPEEY	9	Unmodified	_VAQYRPEEY_					0	0	0		nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3;nc|ENSG00000075711|Q12959-8|DLG1;nc|ENSG00000075711|Q12959-9|DLG1;ENST00000471733.5_1_3:196807912-197024075:-|nuORF;nc|ENSG00000075711|Q12959-5|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959|DLG1;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959-2|DLG1	nc|ENSG00000082458|Q92796-2|DLG3;ENST00000471733.5_1_3:196807912-197024075:-|nuORF	ENST00000471733.5_1_3:196807912-197024075:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	578.1773681640625	2	577.77747	1153.54039	-0.35239	-0.0002036	-0.13486	-7.7921E-05	-0.48725	-0.00028152	577.7773426569744	31.041	0.5079	31.041	30.754	31.262	0					31	9	5	0	0	0	0.025037	1	9902	9902		110.55	60.998	1	13499000			57012	1759;1620	41514	41844	55656	55656					-0.03024052770342678
VAQYRPEEY	9	Unmodified	_VAQYRPEEY_					0	0	0		nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3;nc|ENSG00000075711|Q12959-8|DLG1;nc|ENSG00000075711|Q12959-9|DLG1;ENST00000471733.5_1_3:196807912-197024075:-|nuORF;nc|ENSG00000075711|Q12959-5|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959|DLG1;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959-2|DLG1	nc|ENSG00000082458|Q92796-2|DLG3;ENST00000471733.5_1_3:196807912-197024075:-|nuORF	ENST00000471733.5_1_3:196807912-197024075:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	578.1775512695312	2	577.77747	1153.54039	-0.21287	-0.00012299	-0.33646	-0.0001944	-0.54933	-0.00031739	577.7771245952104	30.396	0.60765	31.115	30.809	31.417	0.71857					35	11	5	0	0	0	0.019499	1	10662	10662		103.42	53.865	1	12115000			57013	1759;1620	41514	41844	55657	55657					-0.03024052770342678
VARARGPA	8	Unmodified	_VARARGPA_					0	0	0			REV__ENSG00000160999|ENST00000444095|SH2B2	REV__ENSG00000160999|ENST00000444095|SH2B2	MULTI-MSMS	A375_MHC_IP_R1	1	399.6408996582031	2	399.240661	796.46677	-0.059019	-2.3563E-05	0.58843	0.00023493	0.52941	0.00021136	399.24081196637616	110.43	1.1224	110.43	110.09	111.21	0					29	21	2	0	0	0	0.77603	1	40449	40449		9.3474	0	1	1920000	+		57014	20195	41515	41845	55658	55658					0.06039488368514867
VARARGPA	8	Unmodified	_VARARGPA_					0	0	0			REV__ENSG00000160999|ENST00000444095|SH2B2	REV__ENSG00000160999|ENST00000444095|SH2B2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	399.240661	796.46677	-0.059019	-2.3563E-05	0.58843	0.00023493	0.52941	0.00021136	399.24081196637616	110.43	1.1224	110.43	110.09	111.21	0	-0.070868	0.00012002	NaN	9.3474	29	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1920000	+		57015	20195	41515	41845							0.06039488368514867
VARARGPA	8	Unmodified	_VARARGPA_					0	0	0			REV__ENSG00000160999|ENST00000444095|SH2B2	REV__ENSG00000160999|ENST00000444095|SH2B2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	399.240661	796.46677	0.078482	3.1333E-05	0.28925	0.00011548	0.36773	0.00014681	399.2406600161198	109.82	1.2246	110.57	110.18	111.41	0.74684	0.070868	-0.00011888	NaN	9.3474	39	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1677200	+		57016	20195	41515	41845							0.06039488368514867
VARERRKPSER	11	Unmodified	_VARERRKPSER_					0	0	0		ENST00000591419.2_2_19:10613109-10613358:-|nuORF	ENST00000591419.2_2_19:10613109-10613358:-|nuORF	ENST00000591419.2_2_19:10613109-10613358:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	692.8001098632812	2	692.400015	1382.78548	-0.61842	-0.00042819	-0.45805	-0.00031715	-1.0765	-0.00074535	692.4008186225013	132.86	1.3205	133.03	132.74	134.06	0.16487					54	25	3	0	0	0	0.73672	1	52244	52244		2.4985	1.0166	1	9992400			57017	13801	41516	41846	55659	55659					0.10939665483169847
VARKKRRMVK	10	Unmodified	_VARKKRRMVK_					0	0	0			REV__ENST00000376769.6_1_6:30036436-30037012:+|nuORF	REV__ENST00000376769.6_1_6:30036436-30037012:+|nuORF	MSMS	A375_MHC_IP_R2	2	636.4190673828125	2	636.413883	1270.81321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.675	1	81.42	80.92	81.92	0.74474								0	0	0	0.15585	1	30631	30631		1.8442	0.36234	1		+		57018	24150	41517	41847	55660	55660					0.1886389720968964
VARLDRWKHKL	11	Unmodified	_VARLDRWKHKL_					0	0	0			REV__nc|ENSG00000171045|Q96NA8-2|TSNARE1	REV__nc|ENSG00000171045|Q96NA8-2|TSNARE1	MSMS	A375_MHC_IP_R2	2	711.3519897460938	2	711.428045	1420.84154	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.341	1	99.101	98.601	99.601	0.75977								0	0	0	0.16302	1	37310	37310		2.9952	1.5133	1		+		57019	21038	41518	41848	55661	55661					0.14794918390634848
VARNKGPQ	8	Unmodified	_VARNKGPQ_					0	0	0			REV__nc|ENSG00000101928|Q9UJG1-3|MOSPD1	REV__nc|ENSG00000101928|Q9UJG1-3|MOSPD1	MULTI-MSMS	A375_MHC_IP_R2	2	435.6510314941406	2	435.251226	868.487899	-0.23922	-0.00010412	0.039225	1.7073E-05	-0.19999	-8.7047E-05	435.2511563360184	104.48	6.2587	105.24	102.77	109.03	0.76308					258	122	3	0	0	0	0.7773	1	39384	39384		4.756	0.42677	1	16931000	+		57020	27152	41519	41849	55662	55662					0.04839453677379879
VARPAPVAV	9	Unmodified	_VARPAPVAV_					0	0	0		ENSG00000056097|ENST00000265069|ZFR;ENST00000505366.1_1_5:32406854-32444764:-|nuORF	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MSMS	A375_MHC_IP_R2	2	440.67364501953125	2	440.27417	878.533787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.669	1	34.421	33.921	34.921	0.75225								0	0	0	0.15069	1	12080	12080		20.454	2.3186	1				57021	1276	41520	41850	55663	55663					0.08966098859605154
VARPVSVGL	9	Unmodified	_VARPVSVGL_					0	0	0		nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1;ENST00000532550.1_1_11:601671-606691:+|nuORF	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MULTI-SECPEP	A375_MHC_IP_R1	1	449.6793518066406	2	449.279452	896.544351	0.30581	0.00013739	-0.30672	-0.0001378	-0.00091094	-4.0926E-07	449.27925140208094	69.722	0.60642	69.722	69.478	70.085	0					27	11	3	0	0	0	0.69504	1	25285	25285		12.532	0.89125	1	4289700			57022	14477	41521	41851	55664	55664					0.09194081514044683
VARPVSVGL	9	Unmodified	_VARPVSVGL_					0	0	0		nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1;ENST00000532550.1_1_11:601671-606691:+|nuORF	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MULTI-SECPEP	A375_MHC_IP_R2	2	449.6792907714844	2	449.279452	896.544351	-0.20201	-9.076E-05	0.00092539	4.1576E-07	-0.20109	-9.0344E-05	449.2793342637017	68.748	0.70909	69.483	69.171	69.88	0.73511					29	13	3	0	0	0	0.50702	1	26044	26044		32.305	0	1	5094400			57023	14477	41521	41851	55665	55665					0.09194081514044683
VARRGKKIFV	10	Unmodified	_VARRGKKIFV_					0	0	0		nc|ENSG00000140598|Q7Z2Z2-2|EFL1;ENSG00000140598|ENST00000268206|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	MULTI-MSMS	A375_MHC_IP_R1	1	391.9678039550781	3	391.924142	1172.7506	0.03563	1.3964E-05	0.35076	0.00013747	0.38639	0.00015143	391.9242804412882	65.135	1.271	65.135	64.851	66.122	0					68	24	4	0	0	0	0.32528	1	23736	23736		38.615	20.242	1	45938000			57024	5173	41522	41852	55666	55666					0.1711307441316876
VASAVLSLP	9	Unmodified	_VASAVLSLP_					0	0	0		ENST00000545827.6_1_16:981676-1004363:-|nuORF	ENST00000545827.6_1_16:981676-1004363:-|nuORF	ENST00000545827.6_1_16:981676-1004363:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	429.1604309082031	2	428.760561	855.506569	-0.066544	-2.8531E-05	-0.37853	-0.0001623	-0.44507	-0.00019083	428.76041179078595	43.332	0.45641	44.105	43.876	44.333	0.7724					13	8	2	0	0	0	0.24479	1	16148	16148		42.095	0	1	3710100			57025	13326	41523	41853	55667	55667					0.07303570528563341
VASCGRLY	8	Carbamidomethyl (C)	_VASC(Carbamidomethyl (C))GRLY_	VASC(1)GRLY		VASC(85)GRLY		0	1	0		nc|ENSG00000114648|O94889-2|KLHL18;ENSG00000114648|ENST00000232766|KLHL18	nc|ENSG00000114648|O94889-2|KLHL18	nc|ENSG00000114648|O94889-2|KLHL18	MULTI-MSMS	A375_MHC_IP_R1	1	463.6312561035156	2	463.231645	924.448736	-0.23322	-0.00010803	-0.17089	-7.9161E-05	-0.40411	-0.0001872	463.23156936714025	28.719	0.4549	28.719	28.541	28.996	0					20	8	3	0	0	0	0.15393	1	8903	8903		85.272	27.801	1	9091200			57026	3233	41524	41854	55668	55668	22				-0.016510146685163818
VASCGRLY	8	Carbamidomethyl (C)	_VASC(Carbamidomethyl (C))GRLY_	VASC(1)GRLY		VASC(68)GRLY		0	1	0		nc|ENSG00000114648|O94889-2|KLHL18;ENSG00000114648|ENST00000232766|KLHL18	nc|ENSG00000114648|O94889-2|KLHL18	nc|ENSG00000114648|O94889-2|KLHL18	MULTI-MSMS	A375_MHC_IP_R2	2	463.631591796875	2	463.231645	924.448736	-0.71739	-0.00033232	-0.060512	-2.8031E-05	-0.77791	-0.00036035	463.2316774462313	28.055	0.45692	28.734	28.553	29.01	0.67857					19	8	3	0	0	0	0.19008	1	9657	9657		68.081	19.735	1	9844200			57027	3233	41524	41854	55669	55669	22				-0.016510146685163818
VASCGRVF	8	Carbamidomethyl (C)	_VASC(Carbamidomethyl (C))GRVF_	VASC(1)GRVF		VASC(42)GRVF		0	1	0		ENST00000520223.1_1_8:41456352-41456517:+|nuORF	ENST00000520223.1_1_8:41456352-41456517:+|nuORF	ENST00000520223.1_1_8:41456352-41456517:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	448.626220703125	2	448.226362	894.438172	-0.063508	-2.8466E-05	-0.13301	-5.9617E-05	-0.19651	-8.8082E-05	448.22627336417776	31.679	0.56108	31.679	31.514	32.075	0					20	10	3	0	0	0	0.67331	1	10184	10184		41.84	9.5341	1	4428900			57028	12990	41525	41855	55670	55670	62				-0.013269973229398602
VASDSIRTTVP	11	Unmodified	_VASDSIRTTVP_					0	0	0			REV__nc|ENSG00000106459|Q16656-3|NRF1	REV__nc|ENSG00000106459|Q16656-3|NRF1	MULTI-SECPEP	A375_MHC_IP_R2	2	573.7216186523438	2	573.311677	1144.6088	-0.13133	-7.5292E-05	-3.3325	-0.0019106	-3.4638	-0.0019859	573.3102084695563	98.821	0.45501	99.581	99.403	99.858	0.75977					12	8	2	0	0	0	0.28117	1	37574	37574		47.749	30.636	1	1566200	+		57029	17450	41526	41856	55671	55671					0.042281918095113724
VASEVYKAV	9	Unmodified	_VASEVYKAV_					0	0	0		nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF	nc|ENSG00000087111|Q96S52-2|PIGS	nc|ENSG00000087111|Q96S52-2|PIGS	MULTI-SECPEP	A375_MHC_IP_R1	1	483.6686706542969	2	483.26875	964.522947	-0.35436	-0.00017125	0.55326	0.00026738	0.19891	9.6126E-05	483.2689104446398	34.682	0.40485	34.682	34.303	34.708	0					16	7	3	0	0	0	0.074405	1	11441	11441		45.74	11.338	1	9185900			57030	1858	41527	41857	55672	55672					0.03926651694666816
VASEVYKAV	9	Unmodified	_VASEVYKAV_					0	0	0		nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF	nc|ENSG00000087111|Q96S52-2|PIGS	nc|ENSG00000087111|Q96S52-2|PIGS	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6685485839844	2	483.26875	964.522947	-1.0648	-0.00051457	0.33085	0.00015989	-0.73393	-0.00035468	483.2688148188014	33.924	0.25307	34.677	34.5	34.753	0.75225					12	4	3	0	0	0	0.05217	1	12193	12193		79.596	27.328	1	10143000			57031	1858	41527	41857	55673	55673					0.03926651694666816
VASFPKKQE	9	Unmodified	_VASFPKKQE_					0	0	0		ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	MULTI-MSMS	A375_MHC_IP_R1	1	517.6864624023438	2	517.287474	1032.5604	-0.53419	-0.00027633	-0.90999	-0.00047073	-1.4442	-0.00074706	517.2870982392566	59.379	1.2703	59.379	58.685	59.955	0					55	24	4	0	0	0	0.51106	1	21267	21267		19.257	1.1106	1	12438000			57032	3102	41528	41858	55674	55674					0.04541742960304873
VASFPKKQE	9	Unmodified	_VASFPKKQE_					0	0	0		ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	517.287474	1032.5604	-0.53419	-0.00027633	-0.90999	-0.00047073	-1.4442	-0.00074706	517.2870982392566	59.379	1.2703	59.379	58.685	59.955	0	0.061763	3.7563E-05	NaN	19.257	55	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12438000			57033	3102	41528	41858							0.04541742960304873
VASFRSKAY	9	Unmodified	_VASFRSKAY_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	A375_MHC_IP_R1	1	514.4326171875	2	514.779816	1027.54508	-0.47667	-0.00024538	-0.92834	-0.00047789	-1.405	-0.00072327	514.7791763498313	23.14	0.25248	23.14	22.974	23.227	0					7	4	2	0	0	0	0.75164	1	6337	6337		2.9952	0	1	2477600			57034	7927	41529	41859	55675	55675					0.03240876163090434
VASFSGQI	8	Unmodified	_VASFSGQI_					0	0	0		ENSG00000148840|ENST00000278070|PPRC1;nc|ENSG00000148840|Q5VV67-2|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	MULTI-MSMS	A375_MHC_IP_R1	1	405.1137390136719	2	404.713611	807.412668	-0.40821	-0.00016521	0.22983	9.3017E-05	-0.17837	-7.219E-05	404.7138605770969	53.503	0.5603	53.503	53.301	53.861	0					17	10	2	0	0	0	0.74466	1	19101	19101		21.747	1.293	1	3460500			57035	5768	41530	41860	55676	55676					0.0012585142628722679
VASIRLFGF	9	Unmodified	_VASIRLFGF_					0	0	0		nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2;nc|ENSG00000102100|P78381-5|SLC35A2	nc|ENSG00000102100|P78381-2|SLC35A2	nc|ENSG00000102100|P78381-2|SLC35A2	MULTI-SECPEP	A375_MHC_IP_R1	1	505.6948547363281	2	505.295102	1008.57565	0.083361	4.2122E-05	-0.046747	-2.3621E-05	0.036614	1.8501E-05	505.29509649780607	114.77	0.55495	114.77	114.52	115.07	0					16	10	2	0	0	0	0.36673	1	42120	42120		26.021	8.9078	1	2906200			57036	2358	41531	41861	55677	55677					0.0717065454813337
VASIRLFGF	9	Unmodified	_VASIRLFGF_					0	0	0		nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2;nc|ENSG00000102100|P78381-5|SLC35A2	nc|ENSG00000102100|P78381-2|SLC35A2	nc|ENSG00000102100|P78381-2|SLC35A2	MULTI-SECPEP	A375_MHC_IP_R2	2	505.69537353515625	2	505.295102	1008.57565	-0.49059	-0.00024789	0.14938	7.5483E-05	-0.3412	-0.00017241	505.2949876995566	113.69	0.604	114.4	114.13	114.73	0.70985					16	11	2	0	0	0	0.074405	1	42921	42921		53.404	31.657	1	3055500			57037	2358	41531	41861	55678	55678					0.0717065454813337
VASIVTTK	8	Unmodified	_VASIVTTK_					0	0	0			REV__ENST00000579005.1_1_17:73702284-73702598:+|nuORF	REV__ENST00000579005.1_1_17:73702284-73702598:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	410.15289306640625	2	409.752736	817.490919	-0.045126	-1.849E-05	0.091623	3.7543E-05	0.046497	1.9052E-05	409.75271975289024	34.682	0.25284	34.682	34.557	34.81	0					6	4	2	0	0	0	0.6033	1	11492	11492		47.749	0	1	3006000	+		57038	20210	41532	41862	55679	55679					0.07487284011517659
VASLKEKL	8	Unmodified	_VASLKEKL_					0	0	0		ENST00000590714.1_1_19:56109859-56110126:-|nuORF	ENST00000590714.1_1_19:56109859-56110126:-|nuORF	ENST00000590714.1_1_19:56109859-56110126:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	444.2881164550781	2	444.28166	886.548768	-0.47201	-0.00020971	-0.49009	-0.00021774	-0.9621	-0.00042744	444.2815469813304	45.029	0.45761	45.798	45.594	46.052	0.76909					13	8	2	0	0	0	0.77781	1	16744	16744		2.8892	0	1	2403800			57039	13789	41533	41863	55680	55680					0.10095545936940198
VASLLNSIRS	10	Unmodified	_VASLLNSIRS_					0	0	0		ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	MULTI-SECPEP	A375_MHC_IP_R1	1	530.7112426757812	2	530.31148	1058.60841	-0.76868	-0.00040764	0.81591	0.00043269	0.047226	2.5044E-05	530.3118575936766	129.47	0.55769	129.47	129.3	129.85	0					19	10	2	0	0	0	0.72086	1	49828	49828		30.637	30.637	1	8513400			57040	1734	41534	41864	55681	55681					0.08144816880303551
VASMAPLGAQY	11	Unmodified	_VASMAPLGAQY_					0	0	0		ENSG00000072858|ENST00000264852|SIDT1;nc|ENSG00000072858|Q9NXL6-2|SIDT1;ENST00000491730.5_1_3:113251655-113300327:+|nuORF;ENST00000483946.1_1_3:113252030-113286558:+|nuORF	ENSG00000072858|ENST00000264852|SIDT1	ENSG00000072858|ENST00000264852|SIDT1	MULTI-MSMS	A375_MHC_IP_R2	2	554.1860961914062	2	554.278792	1106.54303	-1.262	-0.00069951	2.2913	0.00127	1.0292	0.00057049	554.2804216488274	33.609	0.50536	34.362	34.146	34.651	0.75225					15	9	2	0	0	0	0.62292	1	11967	11967		21.537	9.0054	1	3493700			57041	1551	41535	41865	55682	55682					-0.005979206370284373
VASMEEKRQEV	11	Unmodified	_VASMEEKRQEV_					0	0	0			REV__nc|ENSG00000160460|Q9H254-4|SPTBN4	REV__nc|ENSG00000160460|Q9H254-4|SPTBN4	MULTI-SECPEP	A375_MHC_IP_R2	2	436.67120361328125	3	435.887093	1304.63945	-0.69079	-0.00030111	-1.052	-0.00045856	-1.7428	-0.00075967	435.8866147215765	57.083	0.25587	57.833	57.662	57.918	0.75014					5	4	2	0	0	0	0.99332	1	21552	21552		7.0371	0.80273	1	622720	+		57042	20172	41536	41866	55683	55683					-0.0006839786776708934
VASPALGRL	9	Unmodified	_VASPALGRL_					0	0	0			REV__ENSG00000079313|ENST00000170168|REXO1	REV__ENSG00000079313|ENST00000170168|REXO1	MULTI-SECPEP	A375_MHC_IP_R1	1	442.6714782714844	2	442.271627	882.528701	-0.33925	-0.00015004	0.15491	6.8512E-05	-0.18434	-8.1529E-05	442.271704946966	39.721	0.86284	39.721	39.34	40.203	0					38	16	4	0	0	0	0.11436	1	13584	13584		68.081	7.6912	1	15408000	+		57043	16729	41537	41867	55684	55684					0.08273794997001005
VASPALGRL	9	Unmodified	_VASPALGRL_					0	0	0			REV__ENSG00000079313|ENST00000170168|REXO1	REV__ENSG00000079313|ENST00000170168|REXO1	MULTI-MSMS	A375_MHC_IP_R2	2	442.67144775390625	2	442.271627	882.528701	-0.60703	-0.00026847	0.11662	5.1577E-05	-0.49041	-0.00021689	442.2716541331429	38.871	0.56387	39.645	39.401	39.965	0.77451					28	10	4	0	0	0	0.033557	1	14312	14312		71.922	13.243	1	14816000	+		57044	16729	41537	41867	55685	55685					0.08273794997001005
VASPALGRL	9	Unmodified	_VASPALGRL_					0	0	0			REV__ENSG00000079313|ENST00000170168|REXO1	REV__ENSG00000079313|ENST00000170168|REXO1	MULTI-SECPEP	A375_MHC_IP_R2	2	442.1393737792969	2	442.271627	882.528701	-0.60703	-0.00026847	0.11662	5.1577E-05	-0.49041	-0.00021689	442.2716541331429	38.871	0.56387	39.645	39.401	39.965	0.77451					28	10	4	0	0	0	0.059859	1	14292	14292		81.89	10.757	1	14816000	+		57045	16729	41537	41867	55686	55686					0.08273794997001005
VASPGRKH	8	Unmodified	_VASPGRKH_					0	0	0		ENST00000482360.5_1_1:6645916-6646228:+|nuORF	ENST00000482360.5_1_1:6645916-6646228:+|nuORF	ENST00000482360.5_1_1:6645916-6646228:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	426.6457824707031	2	426.245944	850.477334	-0.023526	-1.0028E-05	-0.22747	-9.6959E-05	-0.251	-0.00010699	426.2458092212477	116.52	1.0684	117.18	116.92	117.99	0.65961					38	20	2	0	0	0	0.7779	1	44306	44306		2.5775	0	1	17847000			57046	12522	41538	41868	55687	55687					0.0461147102294035
VASPVHLPE	9	Unmodified	_VASPVHLPE_					0	0	0			REV__nc|ENSG00000270765|Q8NHY3-2|GAS2L2	REV__nc|ENSG00000270765|Q8NHY3-2|GAS2L2	MULTI-SECPEP	A375_MHC_IP_R2	2	475.1604919433594	2	474.761092	947.507631	-0.50022	-0.00023749	-0.28661	-0.00013607	-0.78683	-0.00037356	474.7610103079803	63.038	0.50687	63.781	63.584	64.091	0.74263					20	9	3	0	0	0	0.43707	1	23923	23923		21.747	0	1	2446500	+		57047	27542	41539	41869	55688	55688					0.03177784897479796
VASQLPRIF	9	Unmodified	_VASQLPRIF_					0	0	0		nc|ENSG00000167085|P35232-2|PHB1;ENSG00000167085|ENST00000300408|PHB1;ENST00000393345.8_1_17:47486298-47490626:-|nuORF	nc|ENSG00000167085|P35232-2|PHB1	nc|ENSG00000167085|P35232-2|PHB1	MULTI-MSMS	A375_MHC_IP_R1	1	516.20556640625	2	515.805834	1029.59712	-0.57654	-0.00029738	0.47662	0.00024585	-0.099915	-5.1537E-05	515.8061198735433	83.558	1.0666	83.558	83.125	84.191	0					33	20	2	0	0	0	0.0099819	1	30521	30521		122.18	54.098	1	12840000			57048	7153	41540	41870	55689	55689					0.08350039576816926
VASQLPRIF	9	Unmodified	_VASQLPRIF_					0	0	0		nc|ENSG00000167085|P35232-2|PHB1;ENSG00000167085|ENST00000300408|PHB1;ENST00000393345.8_1_17:47486298-47490626:-|nuORF	nc|ENSG00000167085|P35232-2|PHB1	nc|ENSG00000167085|P35232-2|PHB1	MULTI-MSMS	A375_MHC_IP_R2	2	516.2056884765625	2	515.805834	1029.59712	-0.77763	-0.00040111	0.21123	0.00010895	-0.5664	-0.00029215	515.8059521818499	82.6	0.75777	83.342	83.042	83.8	0.74293					26	14	2	0	0	0	0.0096896	1	31321	31321		110.67	51.996	1	13109000			57049	7153	41540	41870	55690	55690					0.08350039576816926
VASQTVQRSM	10	Unmodified	_VASQTVQRSM_					0	0	0		nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;ENST00000466514.5_1_7:150731570-150742433:+|nuORF;nc|ENSG00000197150|Q9NUT2-5|ABCB8;nc|ENSG00000197150|Q9NUT2-4|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8	nc|ENSG00000197150|Q9NUT2-3|ABCB8	nc|ENSG00000197150|Q9NUT2-3|ABCB8	MULTI-MSMS	A375_MHC_IP_R1	1	554.70556640625	2	553.784773	1105.55499	-0.58618	-0.00032462	1.516	0.00083952	0.92978	0.0005149	553.7866783853646	33.378	1.7196	33.378	32.383	34.103	0					67	33	3	0	0	0	0.39599	1	10826	10826		34.402	3.7652	1	2177600			57050	9123	41541	41871	55691	55691					0.006436961061581314
VASREEVAI	9	Unmodified	_VASREEVAI_					0	0	0		ENSG00000112855|ENST00000230771|HARS2;nc|ENSG00000112855|P49590-2|HARS2	ENSG00000112855|ENST00000230771|HARS2	ENSG00000112855|ENST00000230771|HARS2	MULTI-SECPEP	A375_MHC_IP_R1	1	487.4793701171875	2	487.269281	972.52401	-0.32727	-0.00015947	0.091363	4.4518E-05	-0.23591	-0.00011495	487.2693843511253	36.21	0.40558	36.21	36.033	36.439	0					12	7	2	0	0	0	0.35487	1	12114	12114		29.082	8.667	1	1970800			57051	3115	41542	41872	55692	55692					0.03664866063570571
VASSAHTF	8	Unmodified	_VASSAHTF_					0	0	0		ENST00000541239.5_1_13:111296410-111296557:-|nuORF	ENST00000541239.5_1_13:111296410-111296557:-|nuORF	ENST00000541239.5_1_13:111296410-111296557:-|nuORF	MSMS	A375_MHC_IP_R2	2	410.152587890625	2	410.20341	818.392267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.017	1	34.769	34.269	35.269	0.75225								0	0	0	0.16876	1	12233	12233		20.871	0	1				57052	13283	41543	41873	55693	55693					-0.02419319233524675
VASSFFYVLF	10	Unmodified	_VASSFFYVLF_					0	0	0		ENST00000425818.2_1_15:66679685-66737158:+|nuORF	ENST00000425818.2_1_15:66679685-66737158:+|nuORF	ENST00000425818.2_1_15:66679685-66737158:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	393.9396057128906	3	393.874342	1178.6012	-0.62143	-0.00024477	-0.1044	-4.1119E-05	-0.72583	-0.00028588	393.87434511383384	34.012	0.40371	34.764	34.45	34.853	0.75225					15	7	3	0	0	0	0.91556	1	12228	12228		8.9762	0.53194	1	3253100			57053	11793	41544	41874	55694	55694					0.019040842798858648
VASSHLLQSEF	11	Unmodified	_VASSHLLQSEF_					0	0	0		ENST00000548220.1_1_12:71054984-71148538:-|nuORF;nc|ENSG00000153233|Q15256-3|PTPRR;nc|ENSG00000153233|Q15256-4|PTPRR;nc|ENSG00000153233|Q15256-5|PTPRR;PTPRR|p.W552Kfs*26|1|0.33|ENSG00000153233|chr12:70661053-70661054|-/TTTGATAGGGCAGTTTG|frameshift_variant;ENSG00000153233|ENST00000283228|PTPRR	ENST00000548220.1_1_12:71054984-71148538:-|nuORF	ENST00000548220.1_1_12:71054984-71148538:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	406.9436950683594	3	406.543544	1216.6088	-0.37404	-0.00015206	-0.25586	-0.00010402	-0.6299	-0.00025608	406.5436781291317	24.625	0.60564	24.625	24.447	25.053	0					35	11	4	0	0	0	0.72909	1	7037	7037		9.7643	0	1	18704000			57054	6018	41545	41875	55695	55695					0.009161918095287547
VATAQGRYY	9	Unmodified	_VATAQGRYY_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1;ENST00000466794.5_1_19:12769146-12777470:-|nuORF;ENST00000462144.1_1_19:12771887-12774226:-|nuORF	nc|ENSG00000104774|O00754-2|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-SECPEP	A375_MHC_IP_R1	1	514.6453247070312	2	514.761623	1027.50869	-0.83982	-0.00043231	-0.1037	-5.3381E-05	-0.94352	-0.00048569	514.7615238972202	26.213	0.40594	26.213	26.068	26.474	0					14	7	2	0	0	0	0.011451	1	7787	7787		118.89	84.792	1	5001200			57055	2535	41546	41876	55696	55696					-0.003960007336218041
VATAQGRYY	9	Unmodified	_VATAQGRYY_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1;ENST00000466794.5_1_19:12769146-12777470:-|nuORF;ENST00000462144.1_1_19:12771887-12774226:-|nuORF	nc|ENSG00000104774|O00754-2|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-MSMS	A375_MHC_IP_R2	2	515.1610717773438	2	514.761623	1027.50869	-1.2173	-0.00062664	0.463	0.00023834	-0.75435	-0.00038831	514.7618022447891	25.712	0.35698	26.372	26.194	26.551	0.65992					11	6	2	0	0	0	0.010171	1	8629	8629		96.111	63.805	1	5335700			57056	2535	41546	41876	55697	55697					-0.003960007336218041
VATDALSGVL	10	Unmodified	_VATDALSGVL_					0	0	0			REV__nc|ENSG00000135424|Q13683-13|ITGA7	REV__nc|ENSG00000135424|Q13683-13|ITGA7	MULTI-SECPEP	A375_MHC_IP_R2	2	473.6658935546875	2	473.266207	944.517862	-0.74889	-0.00035443	0.28441	0.0001346	-0.46448	-0.00021982	473.2661900207473	35.749	0.60873	36.512	36.183	36.792	0.76338					21	11	3	0	0	0	0.72086	1	13015	13015		30.637	6.616	1	2132100	+		57057	18850	41547	41877	55698	55698					0.04338347832049294
VATEKAVEL	9	Unmodified	_VATEKAVEL_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF;ENST00000460243.1_1_3:53262881-53263452:-|nuORF;ENST00000469678.1_1_3:53259917-53265542:-|nuORF	ENSG00000163931|ENST00000462138|TKT;ENST00000469678.1_1_3:53259917-53265542:-|nuORF	ENSG00000163931|ENST00000462138|TKT	MULTI-SECPEP	A375_MHC_IP_R1	1	480.6737060546875	2	480.274032	958.533512	-0.65394	-0.00031407	0.11664	5.6019E-05	-0.5373	-0.00025805	480.27401300351414	36.819	0.80931	36.819	36.389	37.198	0					33	15	4	0	0	0	0.010039	1	12301	12301		160.69	15.56	1	33142000			57058	6745;12325	41548	41878	55699	55699					0.05258634349092972
VATEKAVEL	9	Unmodified	_VATEKAVEL_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF;ENST00000460243.1_1_3:53262881-53263452:-|nuORF;ENST00000469678.1_1_3:53259917-53265542:-|nuORF	ENSG00000163931|ENST00000462138|TKT;ENST00000469678.1_1_3:53259917-53265542:-|nuORF	ENSG00000163931|ENST00000462138|TKT	MULTI-SECPEP	A375_MHC_IP_R2	2	480.673828125	2	480.274032	958.533512	-0.70778	-0.00033993	0.12337	5.9251E-05	-0.58441	-0.00028068	480.274041567137	35.951	0.71444	36.714	36.435	37.15	0.76338					35	13	4	0	0	0	0.011143	1	13029	13029		136.39	11.354	1	34532000			57059	6745;12325	41548	41878	55700	55700					0.05258634349092972
VATEQPEL	8	Unmodified	_VATEQPEL_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-SECPEP	A375_MHC_IP_R1	1	885.7141723632812	1	886.451639	885.444362	-0.11037	-9.7835E-05	-0.2743	-0.00024316	-0.38467	-0.00034099	886.4513191862804	45.92	0.90964	45.92	45.585	46.495	0					45	17	4	0	0	0	0.87023	1	16194	16194		27.629	3.6082	1	46614000			57060	6987	41549	41879	55701	55701					-0.0029420061041491863
VATEQPEL	8	Unmodified	_VATEQPEL_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MATCH	A375_MHC_IP_R2	2		1	886.451639	885.444362	-0.57686	-0.00051136	-0.084511	-7.4914E-05	-0.66137	-0.00058627	886.4514791334822	45.161	0.9634	45.926	45.539	46.503	0.76519	0.0032148	8.7317E-05	NaN	27.629	48	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44028000			57061	6987	41549	41879							-0.0029420061041491863
VATGAPLPVP	10	Unmodified	_VATGAPLPVP_					0	0	0			REV__ENST00000361813.5_1_1:156246889-156247006:-|nuORF	REV__ENST00000361813.5_1_1:156246889-156247006:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	461.6554260253906	2	461.273835	920.533118	-0.72783	-0.00033573	0.25674	0.00011843	-0.47109	-0.0002173	461.27392741784365	71.889	0.35477	72.623	72.516	72.871	0.73421					10	6	2	0	0	0	0.90853	1	27251	27251		10.824	4.1008	1	933700	+		57062	23924	41550	41880	55702	55702					0.06967259419911898
VATIKSVSF	9	Unmodified	_VATIKSVSF_					0	0	0		nc|ENSG00000080815|P49768-4|PSEN1;nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1	nc|ENSG00000080815|P49768-4|PSEN1	nc|ENSG00000080815|P49768-4|PSEN1	MULTI-MSMS	A375_MHC_IP_R1	1	476.6789245605469	2	476.279118	950.543683	-0.4149	-0.00019761	-0.073218	-3.4872E-05	-0.48811	-0.00023248	476.2791677849119	56.186	0.60671	56.186	55.841	56.447	0					28	11	3	0	0	0	0.0094639	1	20113	20113		106.94	57.007	1	6964600			57063	1721	41551	41881	55703	55703					0.06643242074335376
VATIKSVSF	9	Unmodified	_VATIKSVSF_					0	0	0		nc|ENSG00000080815|P49768-4|PSEN1;nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1	nc|ENSG00000080815|P49768-4|PSEN1	nc|ENSG00000080815|P49768-4|PSEN1	MULTI-MSMS	A375_MHC_IP_R2	2	476.67889404296875	2	476.279118	950.543683	-0.62937	-0.00029975	0.045229	2.1542E-05	-0.58414	-0.00027821	476.27907168331944	55.325	0.60957	56.076	55.83	56.439	0.75075					18	11	2	0	0	0	0.0099737	1	20879	20879		96.367	54.527	1	5864000			57064	1721	41551	41881	55704	55704					0.06643242074335376
VATLATGS	8	Unmodified	_VATLATGS_					0	0	0			REV__ENST00000600804.1_1_19:59065240-59065579:-|nuORF	REV__ENST00000600804.1_1_19:59065240-59065579:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	719.8685302734375	1	719.393396	718.386119	-0.68173	-0.00049043	1.9016	0.001368	1.2199	0.00087759	719.3988606070465	89.626	0.25696	90.358	90.236	90.493	0.7318					6	4	2	0	0	0	0.972	1	34074	34074		0.79363	0	1	691200	+		57065	26503	41552	41882	55705	55705					0.01566162534970772
VATLERSL	8	Unmodified	_VATLERSL_					0	0	0		ENSG00000058453|ENST00000375541|CROCC;nc|ENSG00000058453|Q5TZA2-2|CROCC	ENSG00000058453|ENST00000375541|CROCC	ENSG00000058453|ENST00000375541|CROCC	MULTI-SECPEP	A375_MHC_IP_R1	1	445.1609191894531	2	444.761092	887.507631	0.18419	8.1922E-05	-0.4817	-0.00021424	-0.29751	-0.00013232	444.7608568065821	43.017	0.55964	43.017	42.689	43.249	0					20	10	3	0	0	0	0.46048	1	14922	14922		46.021	0	1	4603200			57066	1293	41553	41883	55706	55706					0.059377848974691005
VATMRSVNY	9	Oxidation (M)	_VATM(Oxidation (M))RSVNY_		VATM(1)RSVNY		VATM(68)RSVNY	0	0	1		ENSG00000168434|ENST00000307149|COG7;ENST00000566364.1_1_16:23400243-23404677:-|nuORF	ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	MULTI-MSMS	A375_MHC_IP_R1	1	529.160400390625	2	528.760766	1055.50698	-0.78347	-0.00041427	-0.3032	-0.00016032	-1.0867	-0.00057459	528.7608099708142	23.425	0.25562	23.425	23.278	23.533	0					10	4	3	0	0	0	0.04093	1	6462	6462		67.838	27.881	1	4605500			57067	7301	41554	41884	55707	55707		371			-0.018553778138766575
VATMRSVNY	9	Oxidation (M)	_VATM(Oxidation (M))RSVNY_		VATM(1)RSVNY		VATM(60)RSVNY	0	0	1		ENSG00000168434|ENST00000307149|COG7;ENST00000566364.1_1_16:23400243-23404677:-|nuORF	ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	MULTI-MSMS	A375_MHC_IP_R2	2	529.1605224609375	2	528.760766	1055.50698	-0.87075	-0.00046042	-0.24163	-0.00012776	-1.1124	-0.00058818	528.7606596375326	21.132	0.30278	21.751	21.575	21.878	0.61932					8	5	2	0	0	0	0.06083	1	6662	6662		60.074	27.957	1	1217000			57068	7301	41554	41884	55708	55708		371			-0.018553778138766575
VATMRSVNY	9	Unmodified	_VATMRSVNY_					0	0	0		ENSG00000168434|ENST00000307149|COG7;ENST00000566364.1_1_16:23400243-23404677:-|nuORF	ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	MULTI-SECPEP	A375_MHC_IP_R1	1	521.163330078125	2	520.763309	1039.51206	-0.61171	-0.00031856	0.41086	0.00021396	-0.20085	-0.0001046	520.763502087912	33.165	0.2516	33.165	32.989	33.241	0					7	4	2	0	0	0	0.062502	1	10812	10812		49.527	27.781	1	2378500			57069	7301	41554	41885	55709	55709					-0.006110739512450891
VATMRSVNY	9	Unmodified	_VATMRSVNY_					0	0	0		ENSG00000168434|ENST00000307149|COG7;ENST00000566364.1_1_16:23400243-23404677:-|nuORF	ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	MULTI-SECPEP	A375_MHC_IP_R2	2	521.1629028320312	2	520.763309	1039.51206	-0.67269	-0.00035031	0.25253	0.00013151	-0.42016	-0.00021881	520.7632414717586	32.502	0.30624	33.239	33.01	33.317	0.73692					10	5	2	0	0	0	0.062502	1	11569	11569		74.2	38.155	1	2968000			57070	7301	41554	41885	55710	55710					-0.006110739512450891
VATPRDYFF	9	Unmodified	_VATPRDYFF_					0	0	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R1	1	558.6793212890625	2	558.279649	1114.54475	-0.45227	-0.00025249	-1.1238	-0.0006274	-1.5761	-0.0008799	558.2788538866671	83.003	0.75909	83.003	82.672	83.432	0					32	12	4	0	0	0	0.035419	2	30312	30312;30431		70.332	34.205	1	8346400			57071	2241	41555	41886	55711;55712	55711					-0.007945435567535242
VATPRDYFF	9	Unmodified	_VATPRDYFF_					0	0	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	A375_MHC_IP_R2	2	558.6800537109375	2	558.279649	1114.54475	-0.75864	-0.00042353	-0.69002	-0.00038523	-1.4487	-0.00080876	558.2793822845763	82.154	1.116	82.897	82.381	83.497	0.74294					43	21	3	0	0	0	0.11849	1	31180	31180		70.332	34.205	1	9207000			57072	2241	41555	41886	55713	55713					-0.007945435567535242
VATREEQEMGG	11	Unmodified	_VATREEQEMGG_					0	0	0			REV__nc|ENSG00000125485|Q9H8H2-4|DDX31	REV__nc|ENSG00000125485|Q9H8H2-4|DDX31	MULTI-MSMS	A375_MHC_IP_R1	1	604.1748046875	2	603.774602	1205.53465	-0.22068	-0.00013324	0.58911	0.00035569	0.36843	0.00022245	603.7749393280834	53.747	0.65968	53.747	53.453	54.113	0					29	12	3	0	0	0	0.72869	1	19156	19156		10.151	0.76745	1	8520100	+		57073	18344	41556	41887	55714	55714					-0.05989519344325345
VATRHSGK	8	Unmodified	_VATRHSGK_					0	0	0		tr|U7SSL3|U7SSL3_FUSNUProbableRNA2'-phosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kptAPE=3SV=1	tr|U7SSL3|U7SSL3_FUSNUProbableRNA2'-phosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kptAPE=3SV=1	tr|U7SSL3|U7SSL3_FUSNUProbableRNA2'-phosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kptAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	428.6434020996094	2	428.243401	854.472249	-0.084189	-3.6053E-05	0.1552	6.6464E-05	0.071013	3.0411E-05	428.24343192792213	104.87	2.794	104.87	102.91	105.7	0					135	54	3	0	0	0	0.7773	2	38596	38001;38596		4.756	1.3694	1	7449400			57074	29639	41557	41888	55715;55716	55716					0.03919167160336201
VATRHSGK	8	Unmodified	_VATRHSGK_					0	0	0		tr|U7SSL3|U7SSL3_FUSNUProbableRNA2'-phosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kptAPE=3SV=1	tr|U7SSL3|U7SSL3_FUSNUProbableRNA2'-phosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kptAPE=3SV=1	tr|U7SSL3|U7SSL3_FUSNUProbableRNA2'-phosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kptAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	428.64349365234375	2	428.243401	854.472249	0.044081	1.8877E-05	0.15918	6.8167E-05	0.20326	8.7044E-05	428.24341373485925	106.4	2.4499	106.4	105.6	108.05	0					101	47	3	0	0	0	0.77804	1	38825	38825		2.0598	1.3694	1	8564000			57075	29639	41557	41888	55717	55717					0.03919167160336201
VATRHSGK	8	Unmodified	_VATRHSGK_					0	0	0		tr|U7SSL3|U7SSL3_FUSNUProbableRNA2'-phosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kptAPE=3SV=1	tr|U7SSL3|U7SSL3_FUSNUProbableRNA2'-phosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kptAPE=3SV=1	tr|U7SSL3|U7SSL3_FUSNUProbableRNA2'-phosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kptAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	428.6432800292969	2	428.243401	854.472249	-0.15688	-6.7185E-05	-0.1437	-6.1538E-05	-0.30058	-0.00012872	428.24326194145647	104.43	2.9492	105.19	103.07	106.02	0.76308					133	57	3	0	0	0	0.7773	3	39201	38983;39201;39386		4.756	2.1785	1	7316400			57076	29639	41557	41888	55718;55719;55720	55719					0.03919167160336201
VATRHSGK	8	Unmodified	_VATRHSGK_					0	0	0		tr|U7SSL3|U7SSL3_FUSNUProbableRNA2'-phosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kptAPE=3SV=1	tr|U7SSL3|U7SSL3_FUSNUProbableRNA2'-phosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kptAPE=3SV=1	tr|U7SSL3|U7SSL3_FUSNUProbableRNA2'-phosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kptAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	428.6436767578125	2	428.243401	854.472249	-0.14266	-6.1091E-05	-0.046804	-2.0043E-05	-0.18946	-8.1135E-05	428.2433045446504	108.77	2.8551	109.52	108.19	111.05	0.74683					98	55	3	0	0	0	0.77624	1	41176	41176		8.5933	8.5933	1	2772200			57077	29639	41557	41888	55721	55721					0.03919167160336201
VATRHSGK	8	Unmodified	_VATRHSGK_					0	0	0		tr|U7SSL3|U7SSL3_FUSNUProbableRNA2'-phosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kptAPE=3SV=1	tr|U7SSL3|U7SSL3_FUSNUProbableRNA2'-phosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kptAPE=3SV=1	tr|U7SSL3|U7SSL3_FUSNUProbableRNA2'-phosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kptAPE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	428.243401	854.472249	0.097161	4.1609E-05	0.032528	1.393E-05	0.12969	5.5539E-05	428.2433341486278	109.14	1.8296	109.14	108.1	109.93	0	-0.18747	3.3034E-05	NaN	8.5933	57	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2201000			57078	29639	41557	41888							0.03919167160336201
VATSFIRTI	9	Unmodified	_VATSFIRTI_					0	0	0		nc|ENSG00000185480|Q9NWS1-6|PARPBP;nc|ENSG00000185480|Q9NWS1-7|PARPBP;nc|ENSG00000185480|Q9NWS1-2|PARPBP;ENSG00000185480|ENST00000327680|PARPBP	nc|ENSG00000185480|Q9NWS1-6|PARPBP	nc|ENSG00000185480|Q9NWS1-6|PARPBP	MULTI-MSMS	A375_MHC_IP_R1	1	504.69793701171875	2	504.297842	1006.58113	0.035897	1.8103E-05	0.014999	7.5637E-06	0.050896	2.5667E-05	504.29784320417923	69.244	0.60897	69.244	68.869	69.478	0					32	11	4	0	0	0	0.02331	1	25088	25088		80.676	25.902	1	22195000			57079	8669	41558	41889	55722	55722					0.07810333339955378
VATSFIRTI	9	Unmodified	_VATSFIRTI_					0	0	0		nc|ENSG00000185480|Q9NWS1-6|PARPBP;nc|ENSG00000185480|Q9NWS1-7|PARPBP;nc|ENSG00000185480|Q9NWS1-2|PARPBP;ENSG00000185480|ENST00000327680|PARPBP	nc|ENSG00000185480|Q9NWS1-6|PARPBP	nc|ENSG00000185480|Q9NWS1-6|PARPBP	MULTI-MSMS	A375_MHC_IP_R2	2	504.69775390625	2	504.297842	1006.58113	-0.56606	-0.00028546	0.65634	0.00033099	0.090285	4.553E-05	504.298149465756	68.36	0.76197	69.095	68.611	69.373	0.73511					40	14	4	0	0	0	0.02331	1	25849	25849		80.676	28.408	1	23412000			57080	8669	41558	41889	55723	55723					0.07810333339955378
VATSFIRTIEL	11	Unmodified	_VATSFIRTIEL_					0	0	0		nc|ENSG00000185480|Q9NWS1-6|PARPBP;nc|ENSG00000185480|Q9NWS1-7|PARPBP;nc|ENSG00000185480|Q9NWS1-2|PARPBP;ENSG00000185480|ENST00000327680|PARPBP	nc|ENSG00000185480|Q9NWS1-6|PARPBP	nc|ENSG00000185480|Q9NWS1-6|PARPBP	MULTI-SECPEP	A375_MHC_IP_R1	1	625.7612915039062	2	625.36117	1248.70779	-0.50548	-0.00031611	-0.50355	-0.0003149	-1.009	-0.00063101	625.3611537806005	100.8	0.55743	100.8	100.53	101.09	0					19	10	3	0	0	0	0.30405	1	37077	37077		60.899	24.393	1	1575400			57081	8669	41559	41890	55724	55724					0.09338214774447806
VATSFIRTIEL	11	Unmodified	_VATSFIRTIEL_					0	0	0		nc|ENSG00000185480|Q9NWS1-6|PARPBP;nc|ENSG00000185480|Q9NWS1-7|PARPBP;nc|ENSG00000185480|Q9NWS1-2|PARPBP;ENSG00000185480|ENST00000327680|PARPBP	nc|ENSG00000185480|Q9NWS1-6|PARPBP	nc|ENSG00000185480|Q9NWS1-6|PARPBP	MULTI-SECPEP	A375_MHC_IP_R2	2	625.760986328125	2	625.36117	1248.70779	-0.54722	-0.00034221	0.18604	0.00011634	-0.36118	-0.00022587	625.3613778088654	99.888	0.55811	100.65	100.42	100.98	0.76278					16	10	2	0	0	0	0.1639	1	37911	37911		68.76	28.521	1	2820300			57082	8669	41559	41890	55725	55725					0.09338214774447806
VATSPGRLF	9	Unmodified	_VATSPGRLF_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	A375_MHC_IP_R1	1	474.66900634765625	2	474.269084	946.523616	-0.48703	-0.00023098	0.23389	0.00011093	-0.25314	-0.00012005	474.26918429236014	54.866	0.55771	54.866	54.619	55.177	0					21	10	3	0	0	0	0.064406	1	19602	19602		58.679	14.821	1	3761200			57083	2144	41560	41891	55726	55726					0.04821491134396183
VATSPGRLF	9	Unmodified	_VATSPGRLF_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	A375_MHC_IP_R2	2	474.6683349609375	2	474.269084	946.523616	-0.91343	-0.00043321	0.090756	4.3043E-05	-0.82268	-0.00039017	474.2692230475248	53.954	0.66394	54.705	54.454	55.118	0.75105					22	12	3	0	0	0	0.064406	2	20378	20332;20378		58.679	22.552	1	2982100			57084	2144	41560	41891	55727;55728	55728					0.04821491134396183
VATTAAAL	8	Unmodified	_VATTAAAL_					0	0	0			REV__ENSG00000108784|ENST00000225927|NAGLU	REV__ENSG00000108784|ENST00000225927|NAGLU	MULTI-SECPEP	A375_MHC_IP_R1	1	716.670654296875	1	717.414131	716.406855	-0.7812	-0.00056045	-0.27504	-0.00019732	-1.0562	-0.00075776	717.4138894481305	85.081	0.51099	85.081	84.8	85.311	0					11	9	2	0	0	0	0.85124	1	31230	31230		34.187	0	1	2164500	+		57085	17553	41561	41892	55729	55729					0.03730752914623281
VATTLEGVSF	10	Unmodified	_VATTLEGVSF_					0	0	0			REV__ENST00000435989.6_1_19:58386099-58386180:-|nuORF	REV__ENST00000435989.6_1_19:58386099-58386180:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	512.6709594726562	2	512.27149	1022.52843	-0.50787	-0.00026017	0.34736	0.00017794	-0.16051	-8.2227E-05	512.2714367876667	59.115	0.66159	59.115	58.786	59.448	0					26	12	3	0	0	0	0.24499	1	21304	21304		52.268	10.429	1	1910300	+		57086	24758	41562	41893	55730	55730					0.018063304864881502
VATTNNTLLIY	11	Unmodified	_VATTNNTLLIY_					0	0	0		ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	MULTI-SECPEP	A375_MHC_IP_R2	2	612.2371826171875	2	611.837528	1221.6605	-0.5659	-0.00034624	-0.43072	-0.00026353	-0.99662	-0.00060977	611.8372657459146	67.111	0.55706	67.847	67.495	68.052	0.73631					17	10	2	0	0	0	0.73984	1	25407	25407		36.506	1.5741	1	2563400			57087	7859	41563	41894	55731	55731					0.05853935503455432
VATTRDYY	8	Unmodified	_VATTRDYY_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENST00000530336.2_1_14:51390668-51411121:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	A375_MHC_IP_R1	1	495.20037841796875	2	494.740357	987.46616	-0.69065	-0.00034169	0.73618	0.00036422	0.045528	2.2525E-05	494.74018989285685	26.494	0.70611	26.494	26.271	26.978	0					21	13	3	0	0	0	0.34256	3	7893	7891;7893;7937		55.503	37.368	1	4145700			57088	2187	41564	41895	55732;55733;55734	55733					-0.028073958618620054
VATTRDYY	8	Unmodified	_VATTRDYY_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENST00000530336.2_1_14:51390668-51411121:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	A375_MHC_IP_R2	2	495.1401062011719	2	494.740357	987.46616	-0.91668	-0.00045352	0.49695	0.00024586	-0.41973	-0.00020766	494.74027043415657	25.945	0.71137	26.604	26.347	27.058	0.65992					18	13	2	0	0	0	0.17784	2	8749	8704;8749		69.105	44.431	1	3178400			57089	2187	41564	41895	55735;55736	55736					-0.028073958618620054
VATTRDYYF	9	Unmodified	_VATTRDYYF_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENST00000530336.2_1_14:51390668-51411121:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	A375_MHC_IP_R1	1	568.21630859375	2	568.274564	1134.53457	-0.21811	-0.00012394	0.018812	1.069E-05	-0.19929	-0.00011325	568.2746923222261	53.73	3.4521	53.73	53.403	56.855	0					185	67	6	0	0	0	0.012447	2	19137	19137;19758		93.166	49.184	1	1121800000			57090	2187	41565	41896	55737;55738	55737					-0.0273115128200061
VATTRDYYF	9	Unmodified	_VATTRDYYF_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENST00000530336.2_1_14:51390668-51411121:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MSMS	A375_MHC_IP_R1	1	568.19482421875	2	568.274564	1134.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.602	1	57.602	57.102	58.102	0								0	0	0	0.09265	1	20670	20670		43.772	12.504	1				57091	2187	41565	41896	55739	55739					-0.0273115128200061
VATTRDYYF	9	Unmodified	_VATTRDYYF_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENST00000530336.2_1_14:51390668-51411121:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-SECPEP	A375_MHC_IP_R1	1	568.6743774414062	2	568.274564	1134.53457	-0.41767	-0.00023735	0.39496	0.00022444	-0.022717	-1.291E-05	568.274713744792	40.125	0.4079	40.125	39.896	40.304	0					16	7	3	0	0	0	0.056023	1	13776	13776		85.642	53.336	1	4529200			57092	2187	41565	41896	55740	55740					-0.0273115128200061
VATTRDYYF	9	Unmodified	_VATTRDYYF_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENST00000530336.2_1_14:51390668-51411121:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-SECPEP	A375_MHC_IP_R1	1	568.674560546875	2	568.274564	1134.53457	-0.22699	-0.00012899	0.35369	0.00020099	0.12669	7.1996E-05	568.2747527807007	37.275	0.55988	37.275	36.945	37.505	0					14	10	2	0	0	0	0.35487	1	12561	12561		36.127	17.981	1	5429300			57093	2187	41565	41896	55741	55741					-0.0273115128200061
VATTRDYYF	9	Unmodified	_VATTRDYYF_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENST00000530336.2_1_14:51390668-51411121:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	A375_MHC_IP_R2	2	568.6741943359375	2	568.274564	1134.53457	-0.90144	-0.00051226	-0.1411	-8.0183E-05	-1.0425	-0.00059245	568.2746209830111	52.964	3.2573	53.715	53.385	56.642	0.75105					172	63	5	0	0	0	0.014789	2	20346	20142;20346		90.135	58.097	1	851160000			57094	2187	41565	41896	55742;55743	55743					-0.0273115128200061
VATTRDYYF	9	Unmodified	_VATTRDYYF_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.E673Gfs*46|1|0.37|ENSG00000100504|chr14:50910054-50910055|-/C|frameshift_variant;ENST00000530336.2_1_14:51390668-51411121:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MSMS	A375_MHC_IP_R2	2	568.1942138671875	2	568.274564	1134.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.709	1	57.459	56.959	57.959	0.75015								0	0	0	0.037799	1	21437	21437		60.074	20.117	1				57095	2187	41565	41896	55744	55744					-0.0273115128200061
VATVKKTK	8	Unmodified	_VATVKKTK_					0	0	0			REV__tr|U7T5Z1|U7T5Z1_FUSNU5-oxoprolinasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pxpAPE=3SV=1	REV__tr|U7T5Z1|U7T5Z1_FUSNU5-oxoprolinasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pxpAPE=3SV=1	MSMS	A375_MHC_IP_R2	2	438.1896667480469	2	437.789653	873.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.316	1	18.919	18.419	19.419	0.60308								0	0	0	0.16876	1	5441	5441		0	0	1		+		57096	28846	41566	41897	55745	55745					0.12291252173861267
VATVRPSL	8	Unmodified	_VATVRPSL_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	A375_MHC_IP_R2	2	422.1581115722656	2	421.758352	841.502152	-0.27292	-0.00011511	0.059857	2.5245E-05	-0.21306	-8.9862E-05	421.75832222302273	39.114	0.61158	39.888	39.658	40.269	0.77451					14	11	2	0	0	0	0.73227	1	14464	14464		46.021	11.919	1	3397500	+		57097	17711	41567	41898	55746	55746					0.0750610610567719
VAVALVAGST	10	Unmodified	_VAVALVAGST_					0	0	0		ENST00000262942.9_2_7:98951626-98951662:+|nuORF	ENST00000262942.9_2_7:98951626-98951662:+|nuORF	ENST00000262942.9_2_7:98951626-98951662:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	444.2882995605469	2	444.263468	886.512382	-0.60648	-0.00026944	0.5899	0.00026207	-0.016578	-7.365E-06	444.263482777873	35.242	0.65774	36.005	35.829	36.486	0.76338					19	12	3	0	0	0	0.70496	1	12827	12827		10.074	0	1	1688800			57098	10314	41568	41899	55747	55747					0.06458669040239329
VAVAPRLVV	9	Unmodified	_VAVAPRLVV_					0	0	0		nc|ENSG00000156521|Q2T9J0-2|TYSND1;ENSG00000156521|ENST00000287078|TYSND1	nc|ENSG00000156521|Q2T9J0-2|TYSND1	nc|ENSG00000156521|Q2T9J0-2|TYSND1	MULTI-SECPEP	A375_MHC_IP_R1	1	462.13494873046875	2	462.30547	922.596387	-0.50411	-0.00023305	0.17909	8.2796E-05	-0.32502	-0.00015026	462.3053856632737	36.705	0.45464	36.705	36.541	36.996	0					11	8	2	0	0	0	0.79683	1	12249	12249		5.2307	0	1	886010			57099	6197	41569	41900	55748	55748					0.13199244927807285
VAVDMMCS	8	Carbamidomethyl (C),Oxidation (M)	_VAVDM(Oxidation (M))MC(Carbamidomethyl (C))S_	VAVDMMC(1)S	VAVDM(0.5)M(0.5)CS	VAVDMMC(40)S	VAVDM(0)M(0)CS	0	1	1		ENSG00000108557|ENST00000353383|RAI1	ENSG00000108557|ENST00000353383|RAI1	ENSG00000108557|ENST00000353383|RAI1	MULTI-MSMS	A375_MHC_IP_R1	1	465.08184814453125	2	464.682281	927.35001	-0.38996	-0.00018121	0.0003866	1.7964E-07	-0.38957	-0.00018103	464.6822168747378	39.585	0.76083	39.585	39.238	39.999	0					32	14	3	0	0	0	0.6817	1	13499	13499		40.449	6.3461	2	13297000			57100	2813	41570	41901	55749	55749	19	124;125			-0.11657122020073984
VAVDMMCS	8	Carbamidomethyl (C),Oxidation (M)	_VAVDM(Oxidation (M))MC(Carbamidomethyl (C))S_	VAVDMMC(1)S	VAVDM(0.5)M(0.5)CS	VAVDMMC(40)S	VAVDM(0)M(0)CS	0	1	1		ENSG00000108557|ENST00000353383|RAI1	ENSG00000108557|ENST00000353383|RAI1	ENSG00000108557|ENST00000353383|RAI1	MULTI-MSMS	A375_MHC_IP_R2	2	465.0817565917969	2	464.682281	927.35001	-0.87388	-0.00040608	-0.13262	-6.1627E-05	-1.0065	-0.0004677	464.6821913851493	38.865	0.7672	39.639	39.351	40.118	0.77451					32	14	3	0	0	0	0.6817	1	14286	14286		40.449	6.3461	2	12833000			57101	2813	41570	41901	55750	55750	19	124;125			-0.11657122020073984
VAVDVAVAE	9	Unmodified	_VAVDVAVAE_					0	0	0			REV__ENST00000567696.1_1_16:777422-777680:+|nuORF	REV__ENST00000567696.1_1_16:777422-777680:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	437.1396484375	2	436.739825	871.465098	0.056568	2.4706E-05	-0.89443	-0.00039063	-0.83786	-0.00036593	436.7396125295746	92.45	0.50716	92.45	92.11	92.617	0					14	9	2	0	0	0	0.64808	1	34028	34028		11.64	0	1	1125300	+		57102	17264	41571	41902	55751	55751					0.024223897692309038
VAVDVAVAE	9	Unmodified	_VAVDVAVAE_					0	0	0			REV__ENST00000567696.1_1_16:777422-777680:+|nuORF	REV__ENST00000567696.1_1_16:777422-777680:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	436.739825	871.465098	0.056568	2.4706E-05	-0.89443	-0.00039063	-0.83786	-0.00036593	436.7396125295746	92.45	0.50716	92.45	92.11	92.617	0	-0.00096793	9.4697E-05	NaN	11.64	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1125300	+		57103	17264	41571	41902							0.024223897692309038
VAVDVAVAE	9	Unmodified	_VAVDVAVAE_					0	0	0			REV__ENST00000567696.1_1_16:777422-777680:+|nuORF	REV__ENST00000567696.1_1_16:777422-777680:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	436.739825	871.465098	-0.19863	-8.6751E-05	-1.1134	-0.00048628	-1.3121	-0.00057303	436.73950771399365	91.717	0.50717	92.452	92.222	92.729	0.7345	0.00096793	-9.6599E-05	NaN	11.64	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	961560	+		57104	17264	41571	41902							0.024223897692309038
VAVDVAVPK	9	Unmodified	_VAVDVAVPK_					0	0	0		ENSG00000103253|ENST00000389703|HAGHL;nc|ENSG00000103253|Q6PII5|HAGHL;nc|ENSG00000103253|Q6PII5-3|HAGHL;nc|ENSG00000103253|Q6PII5-4|HAGHL;ENST00000567696.1_1_16:777422-777680:+|nuORF;ENST00000569143.1_1_16:777422-777998:+|nuORF;ENST00000561750.1_1_16:777422-778482:+|nuORF	ENSG00000103253|ENST00000389703|HAGHL	ENSG00000103253|ENST00000389703|HAGHL	MULTI-SECPEP	A375_MHC_IP_R1	1	449.6737060546875	2	449.273835	896.533118	0.13805	6.2023E-05	-0.12271	-5.513E-05	0.015344	6.8936E-06	449.2739293684846	45.509	0.40352	45.509	45.334	45.738	0					11	7	2	0	0	0	0.63622	1	15968	15968		19.362	13.63	1	1555900			57105	2436	41572	41903	55752	55752					0.08071259419898524
VAVFFGGL	8	Unmodified	_VAVFFGGL_					0	0	0		nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENST00000482195.5_1_6:31499071-31508296:-|nuORF	nc|ENSG00000198563|Q13838-2|DDX39B;ENST00000482195.5_1_6:31499071-31508296:-|nuORF	nc|ENSG00000198563|Q13838-2|DDX39B	MULTI-MSMS	A375_MHC_IP_R1	1	809.9270629882812	1	809.455602	808.448326	-0.38672	-0.00031303	1.6631	0.0013462	1.2764	0.0010332	809.457153844275	100.36	0.60864	100.36	99.975	100.58	0					17	11	2	0	0	0	0.77686	1	36760	36760		6.3541	0	1	5514300			57106	9284;12521	41573	41904	55753	55753					0.03643933673970423
VAVGLGLAV	9	Unmodified	_VAVGLGLAV_					0	0	0			REV__nc|ENSG00000183648|O75438-2|NDUFB1	REV__nc|ENSG00000183648|O75438-2|NDUFB1	MULTI-MSMS	A375_MHC_IP_R2	2	798.4686889648438	1	798.508366	797.501089	-0.89903	-0.00071788	0.36105	0.0002883	-0.53798	-0.00042958	798.5085433170686	102.03	0.81528	102.8	102.46	103.28	0.76428					29	15	3	0	0	0	0.12743	1	38590	38590		45.75	0	1	11560000	+		57107	27400	41574	41905	55754	55754					0.09423891736753376
VAVGLGLV	8	Unmodified	_VAVGLGLV_					0	0	0		ENSG00000139626|ENST00000267082|ITGB7;nc|ENSG00000139626|P26010-2|ITGB7	ENSG00000139626|ENST00000267082|ITGB7	ENSG00000139626|ENST00000267082|ITGB7	MULTI-SECPEP	A375_MHC_IP_R1	1	728.1008911132812	1	727.471252	726.463976	-0.76463	-0.00055625	1.0272	0.00074728	0.26259	0.00019103	727.4720729574764	85.661	0.66016	85.661	85.362	86.022	0					27	12	3	0	0	0	0.72845	1	31322	31322		17.087	0	1	4007600			57108	5093	41575	41906	55755	55755					0.08980220190994714
VAVGSGLSW	9	Unmodified	_VAVGSGLSW_					0	0	0		ENSG00000075188|ENST00000552283|NUP37	ENSG00000075188|ENST00000552283|NUP37	ENSG00000075188|ENST00000552283|NUP37	MULTI-SECPEP	A375_MHC_IP_R1	1	874.879150390625	1	875.462144	874.454868	-0.36347	-0.0003182	-0.41808	-0.00036601	-0.78155	-0.00068422	875.4619065717241	91.411	0.40512	91.411	91.199	91.604	0					12	7	2	0	0	0	0.24548	1	33547	33547		52.268	16.141	1	1885700			57109	1601	41576	41907	55756	55756					0.012618268346614059
VAVGWGWE	8	Unmodified	_VAVGWGWE_					0	0	0		ENST00000267205.6_1_12:122231735-122231939:-|nuORF	ENST00000267205.6_1_12:122231735-122231939:-|nuORF	ENST00000267205.6_1_12:122231735-122231939:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	451.6452941894531	2	452.221603	902.428653	-0.21254	-9.6113E-05	-0.16745	-7.5725E-05	-0.37999	-0.00017184	452.221386358499	27.574	0.35447	28.252	28.047	28.401	0.67857					10	6	2	0	0	0	0.92215	1	9478	9478		15.768	0	1	1647400			57110	10357	41577	41908	55757	55757					-0.026464423368224743
VAVHPQTETY	10	Unmodified	_VAVHPQTETY_					0	0	0			REV__nc|ENSG00000105419|Q99687-3|MEIS3	REV__nc|ENSG00000105419|Q99687-3|MEIS3	MULTI-SECPEP	A375_MHC_IP_R1	1	573.15771484375	2	572.785296	1143.55604	-0.5318	-0.00030461	-0.22097	-0.00012657	-0.75277	-0.00043118	572.7851465145587	29.055	0.60896	29.055	28.643	29.252	0					16	11	2	0	0	0	0.8125	1	8945	8945		24.021	9.1823	1	2735500	+		57111	17381	41578	41909	55758	55758					-0.009997662532896356
VAVKEDLPV	9	Unmodified	_VAVKEDLPV_					0	0	0		ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3;nc|ENSG00000165323|Q8TDW7-2|FAT3	ENSG00000165323|ENST00000525166|FAT3	ENSG00000165323|ENST00000525166|FAT3	MULTI-SECPEP	A375_MHC_IP_R1	1	485.666259765625	2	485.2844	968.554247	-0.052139	-2.5302E-05	-0.20795	-0.00010092	-0.26009	-0.00012622	485.28425006497145	54.117	0.50291	54.117	53.861	54.364	0					14	9	2	0	0	0	0.71541	1	19220	19220		11.64	0	1	1038900			57112	6942	41579	41910	55759	55759					0.06871224728763536
VAVKEDLPV	9	Unmodified	_VAVKEDLPV_					0	0	0		ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3;nc|ENSG00000165323|Q8TDW7-2|FAT3	ENSG00000165323|ENST00000525166|FAT3	ENSG00000165323|ENST00000525166|FAT3	MULTI-MATCH	A375_MHC_IP_R2	2		2	485.2844	968.554247	-1.1913	-0.00057811	0.49312	0.00023931	-0.69815	-0.0003388	485.2846898958055	53.282	0.61424	54.033	53.739	54.353	0.75105	-0.04175	0.00047746	NaN	11.64	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2088500			57113	6942	41579	41910							0.06871224728763536
VAVKGAHVEQL	11	Unmodified	_VAVKGAHVEQL_					0	0	0		nc|ENSG00000176155|Q2TAC2-2|CCDC57;nc|ENSG00000176155|Q2TAC2|CCDC57;ENSG00000176155|ENST00000694881|CCDC57	nc|ENSG00000176155|Q2TAC2-2|CCDC57	nc|ENSG00000176155|Q2TAC2-2|CCDC57	MULTI-SECPEP	A375_MHC_IP_R2	2	576.2318725585938	2	575.83258	1149.65061	-0.47867	-0.00027563	0.044701	2.574E-05	-0.43397	-0.00024989	575.8326285488176	38.156	0.35918	38.931	38.739	39.098	0.77451					16	6	3	0	0	0	0.80621	1	14034	14034		24.991	0	1	5812100			57114	8005	41580	41911	55760	55760					0.08176792288713841
VAVLRAYNY	9	Unmodified	_VAVLRAYNY_					0	0	0		ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1;ENST00000438277.5_1_2:128855105-128928859:+|nuORF	ENSG00000136731|ENST00000259253|UGGT1	ENSG00000136731|ENST00000259253|UGGT1	MULTI-SECPEP	A375_MHC_IP_R1	1	535.19482421875	2	534.795466	1067.57638	-0.66995	-0.00035829	-2.3124	-0.0012367	-2.9824	-0.001595	534.7938886355835	55.304	0.71403	55.304	55.075	55.79	0					23	13	2	0	0	0	0.053904	1	19786	19786		74.929	38.885	1	5054500			57115	4810	41581	41912	55761	55761					0.04529449197161739
VAVMAGHG	8	Unmodified	_VAVMAGHG_					0	0	0			REV__ENSG00000166166|ENST00000389749|TRMT61A	REV__ENSG00000166166|ENST00000389749|TRMT61A	MULTI-MSMS	A375_MHC_IP_R2	2	742.3104248046875	1	741.37122	740.363944	-0.84558	-0.00062689	2.313	0.0017148	1.4674	0.0010879	741.3745983792434	127.14	0.35387	127.41	127.11	127.46	0.26592					9	6	2	0	0	0	0.77781	1	49811	49811		2.8892	0	1	10107000	+		57116	20656	41582	41913	55762	55762					-0.01662340414452501
VAVPSLTF	8	Unmodified	_VAVPSLTF_					0	0	0		ENSG00000172888|ENST00000339296|ZNF621	ENSG00000172888|ENST00000339296|ZNF621	ENSG00000172888|ENST00000339296|ZNF621	MULTI-MSMS	A375_MHC_IP_R1	1	417.64251708984375	2	417.242004	832.469455	0.38463	0.00016048	0.055044	2.2967E-05	0.43967	0.00018345	417.2418876780438	82.291	0.7114	82.291	82.011	82.722	0					21	13	2	0	0	0	0.72761	1	30165	30165		26.341	6.9023	1	1316600			57117	7741	41583	41914	55763	55763					0.04651898982808689
VAVPSLTF	8	Unmodified	_VAVPSLTF_					0	0	0		ENSG00000172888|ENST00000339296|ZNF621	ENSG00000172888|ENST00000339296|ZNF621	ENSG00000172888|ENST00000339296|ZNF621	MULTI-MATCH	A375_MHC_IP_R2	2		2	417.242004	832.469455	-0.12642	-5.2748E-05	-0.17306	-7.2209E-05	-0.29948	-0.00012496	417.24188716760335	81.461	0.60494	82.204	81.877	82.482	0.74293	-0.043334	-7.9706E-05	NaN	26.341	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1374200			57118	7741	41583	41914							0.04651898982808689
VAVRRLIKLAK	11	Unmodified	_VAVRRLIKLAK_					0	0	0			REV__nc|ENSG00000149452|Q8TCC7-5|SLC22A8	REV__nc|ENSG00000149452|Q8TCC7-5|SLC22A8	MULTI-SECPEP	A375_MHC_IP_R2	2	633.5780639648438	2	633.940257	1265.86596	-0.8169	-0.00051787	-1.5421	-0.00097761	-2.359	-0.0014955	633.9371688327819	107.85	0.25629	108.6	108.51	108.76	0.75436					5	4	2	0	0	0	1.0007	1	40768	40768		0.35063	0	1	732490	+		57119	19680	41584	41915	55764	55764					0.2436617854416454
VAVSAIFY	8	Unmodified	_VAVSAIFY_					0	0	0		ENST00000451726.1_1_19:36205079-36205238:+|nuORF	ENST00000451726.1_1_19:36205079-36205238:+|nuORF	ENST00000451726.1_1_19:36205079-36205238:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	434.637939453125	2	435.242004	868.469455	-0.33748	-0.00014689	3.1878	0.0013875	2.8503	0.0012406	435.24476812131394	27.965	0.2542	28.643	28.452	28.706	0.67857					5	4	2	0	0	0	0.96296	1	9561	9561		10.183	0	1	700050			57120	12077	41585	41916	55765	55765					0.029958989827946425
VAVSMLVGI	9	Oxidation (M)	_VAVSM(Oxidation (M))LVGI_		VAVSM(1)LVGI		VAVSM(82)LVGI	0	0	1			REV__tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	REV__tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	453.162109375	2	452.762246	903.50994	-0.20416	-9.2437E-05	-0.16471	-7.4576E-05	-0.36888	-0.00016701	452.76209212645466	104.11	0.66129	104.87	104.55	105.21	0.76308					18	12	2	0	0	0	0.054184	1	39389	39389		81.864	11.149	1	2115600	+		57121	28801	41586	41917	55766	55766		492			0.054324973109373786
VAVTDENIVG	10	Unmodified	_VAVTDENIVG_					0	0	0		nc|ENSG00000205744|Q8IV53-2|DENND1C;ENSG00000205744|ENST00000381480|DENND1C;ENST00000592543.5_1_19:6476783-6477092:-|nuORF	nc|ENSG00000205744|Q8IV53-2|DENND1C	nc|ENSG00000205744|Q8IV53-2|DENND1C	MULTI-SECPEP	A375_MHC_IP_R1	1	509.3611145019531	2	508.766571	1015.51859	-0.68341	-0.0003477	-0.69586	-0.00035403	-1.3793	-0.00070172	508.7660125975366	134.1	0.35504	134.1	133.97	134.32	0					16	6	3	0	0	0	0.92389	1	51735	51735		7.2892	2.0586	1	8180000			57122	9525	41587	41918	55767	55767					0.011451424810957178
VAVVKKSD	8	Unmodified	_VAVVKKSD_					0	0	0		CON__Q2HJF0	CON__Q2HJF0	CON__Q2HJF0	MULTI-MSMS	A375_MHC_IP_R2	2	423.65887451171875	2	423.258185	844.501818	0.051446	2.1775E-05	0.72189	0.00030555	0.77334	0.00032732	423.25875056494135	141.96	0.60739	141.99	141.77	142.38	0.030731					19	11	2	0	0	0	0.7779	1	55544	55544		2.5775	0	1	1071300		+	57123	610	41588	41919	55768	55768					0.07334686385809164
VAVVMALVRMA	11	Unmodified	_VAVVMALVRMA_					0	0	0			REV__ENSG00000162881|ENST00000378661|OXER1	REV__ENSG00000162881|ENST00000378661|OXER1	MULTI-SECPEP	A375_MHC_IP_R1	1	387.9496765136719	3	387.227845	1158.66171	0.1661	6.432E-05	3.1714	0.001228	3.3375	0.0012924	387.229202083482	58.964	0.3564	58.964	58.685	59.041	0					11	6	2	0	0	0	0.9754	1	21191	21191		6.6235	0	1	825620	+		57124	20315	41589	41920	55769	55769					0.08872155066978848
VAWENKDIY	9	Unmodified	_VAWENKDIY_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;ENST00000547085.1_1_12:112600816-112607652:-|nuORF	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-SECPEP	A375_MHC_IP_R1	1	569.126708984375	2	569.282389	1136.55022	-0.26665	-0.0001518	-0.25299	-0.00014402	-0.51964	-0.00029582	569.2821653116393	104.64	0.45504	104.64	104.44	104.89	0					15	8	3	0	0	0	0.77244	1	38502	38502		5.2307	0	1	939980			57125	7762	41590	41921	55770	55770					-0.012588647649408813
VAWFRVELRRV	11	Unmodified	_VAWFRVELRRV_					0	0	0			REV__ENST00000433329.1_1_11:5264487-5264710:-|nuORF	REV__ENST00000433329.1_1_11:5264487-5264710:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	716.322509765625	2	715.922595	1429.83064	-0.77414	-0.00055423	-0.71856	-0.00051443	-1.4927	-0.0010687	715.92241916637	90.382	0.3554	90.382	90.235	90.59	0					10	6	2	0	0	0	0.73647	1	33262	33262		2.7352	1.2533	1	1673300	+		57126	24728	41591	41922	55771	55771					0.13291516016329297
VAWGPLPP	8	Unmodified	_VAWGPLPP_					0	0	0		ENST00000379378.7_1_16:67232026-67232116:+|nuORF	ENST00000379378.7_1_16:67232026-67232116:+|nuORF	ENST00000379378.7_1_16:67232026-67232116:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	419.1367492675781	2	418.736889	835.459225	0.1231	5.1545E-05	0.12485	5.2277E-05	0.24794	0.00010382	418.7367180427995	139.87	0.51317	139.93	139.7	140.21	0.059906					18	9	3	0	0	0	0.972	1	54784	54784		0.79363	0	1	4482100			57127	11334	41592	41923	55772	55772					0.03491336048239191
VAWHHEGKQF	10	Unmodified	_VAWHHEGKQF_					0	0	0		nc|ENSG00000164506|Q5T5C0-3|STXBP5;nc|ENSG00000164506|Q5T5C0-2|STXBP5;ENSG00000164506|ENST00000321680|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	MULTI-SECPEP	A375_MHC_IP_R2	2	413.9399108886719	3	413.540357	1237.59924	-0.028035	-1.1594E-05	-0.82089	-0.00033947	-0.84893	-0.00035107	413.5400740907388	32.502	0.45745	33.239	33.061	33.518	0.73692					11	8	2	0	0	0	0.87163	1	11619	11619		5.4027	2.0831	1	3144800			57128	6845	41593	41924	55773	55773					-0.010055316853595286
VAWNEGSRQW	10	Unmodified	_VAWNEGSRQW_					0	0	0		ENSG00000160131|ENST00000330374|VMA21;nc|ENSG00000160131|Q3ZAQ7-2|VMA21	ENSG00000160131|ENST00000330374|VMA21	ENSG00000160131|ENST00000330374|VMA21	MULTI-MSMS	A375_MHC_IP_R1	1	617.1927490234375	2	616.793986	1231.57342	-0.12507	-7.7139E-05	-0.91264	-0.00056291	-1.0377	-0.00064005	616.7931409607812	54.088	0.40385	54.088	53.809	54.213	0					12	7	2	0	0	0	0.037648	1	19316	19316		79.427	54.028	1	2444900			57129	6399	41594	41925	55774	55774					-0.03310425927634242
VAWQSPSSL	9	Unmodified	_VAWQSPSSL_					0	0	0			REV__ENST00000488090.1_1_10:101128283-101137029:+|nuORF	REV__ENST00000488090.1_1_10:101128283-101137029:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	488.4693908691406	2	487.750724	973.486896	-0.59634	-0.00029086	-0.28857	-0.00014075	-0.88491	-0.00043161	487.7505234386901	67.611	0.76346	67.611	67.091	67.854	0					18	14	2	0	0	0	0.69504	1	24369	24369		7.9102	0	1	597900	+		57130	25344	41595	41926	55775	55775					-0.0009080548219344564
VAWSRDRRKRR	11	Unmodified	_VAWSRDRRKRR_					0	0	0		PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	495.94403076171875	3	495.958908	1484.85489	-0.7396	-0.00036681	-0.0067752	-3.3602E-06	-0.74638	-0.00037017	495.95884980966343	141.77	1.6305	141.77	140.86	142.49	0					67	31	4	0	0	0	0.73934	1	54413	54413		0	0	1	2229600			57131	15171	41596	41927	55776	55776					0.1318616922255842
VAWSRDRRKRR	11	Unmodified	_VAWSRDRRKRR_					0	0	0		PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	PHRF1|p.P1155S|1|0.39|ENSG00000070047|chr11:608919-608919|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	496.3587951660156	3	495.958908	1484.85489	-0.73687	-0.00036546	-0.022758	-1.1287E-05	-0.75963	-0.00037674	496.29314384991864	140.25	1.0802	140.25	139.98	141.06	0					32	20	2	0	0	0	1.0015	1	53992	53992		0	0	1	1061100			57132	15171	41596	41927	55777	55777					0.1318616922255842
VAYEHTDDTF	10	Unmodified	_VAYEHTDDTF_					0	0	0			REV__CPVL|p.G167E|1|0.16|ENSG00000106066|chr7:29092665-29092665|C/T|missense_variant	REV__CPVL|p.G167E|1|0.16|ENSG00000106066|chr7:29092665-29092665|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	599.2422485351562	2	599.256568	1196.49858	-0.25889	-0.00015514	4.3404	0.002601	4.0815	0.0024459	600.2636223060514	53.753	0.45757	53.753	53.555	54.013	0					25	8	4	0	0	0	0.60556	1	19185	19185		20.454	2.3073	1	2445600	+		57133	15910	41597	41928	55778	55778					-0.09180653249541137
VAYEHTDDTF	10	Unmodified	_VAYEHTDDTF_					0	0	0			REV__CPVL|p.G167E|1|0.16|ENSG00000106066|chr7:29092665-29092665|C/T|missense_variant	REV__CPVL|p.G167E|1|0.16|ENSG00000106066|chr7:29092665-29092665|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	599.241455078125	2	599.256568	1196.49858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.024	1	53.775	53.275	54.275	0.75105								0	0	0	0.15105	1	20003	20003		15.847	0	1		+		57134	15910	41597	41928	55779	55779					-0.09180653249541137
VAYHLATRGF	10	Unmodified	_VAYHLATRGF_					0	0	0			REV__ANKRD36C|p.L1401*|1|0.24|ENSG00000174501|chr2:95856059-95856059|A/-|frameshift_variant;REV__ENSG00000135976|ENST00000420699|ANKRD36	REV__ANKRD36C|p.L1401*|1|0.24|ENSG00000174501|chr2:95856059-95856059|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	379.6094970703125	3	378.873336	1133.59818	0.39713	0.00015046	2.7377	0.0010372	3.1348	0.0011877	379.2092572374713	57.093	0.45864	57.093	56.804	57.263	0					13	8	2	0	0	0	0.94044	1	20496	20496		1.9064	0	1	1527800	+		57135	15411;18907	41598	41929	55780	55780					0.03672253945751436
VAYIHPAM	8	Unmodified	_VAYIHPAM_					0	0	0			REV__nc|ENSG00000196535|Q92614-5|MYO18A	REV__nc|ENSG00000196535|Q92614-5|MYO18A	MULTI-MSMS	A375_MHC_IP_R1	1	451.6585693359375	2	451.233656	900.452759	-0.43115	-0.00019455	1.8111	0.00081721	1.3799	0.00062266	451.23452024466826	38.075	0.45694	38.075	37.862	38.319	0					10	8	2	0	0	0	0.76194	1	12859	12859		17.087	0.14425	1	2929300	+		57136	22206	41599	41930	55781	55781					-0.0014492517479993694
VAYWLLGF	8	Unmodified	_VAYWLLGF_					0	0	0			REV__ENSG00000151704|ENST00000392666|KCNJ1	REV__ENSG00000151704|ENST00000392666|KCNJ1	MULTI-SECPEP	A375_MHC_IP_R1	1	485.1452941894531	2	484.765646	967.516739	-0.16256	-7.8802E-05	-1.2534	-0.00060759	-1.4159	-0.00068639	484.7641622475376	42.388	0.30361	42.388	42.233	42.537	0					6	5	2	0	0	0	0.95327	1	14686	14686		6.3541	0	1	815940	+		57137	19767	41600	41931	55782	55782					0.03168178253815768
VAYWRQAGL	9	Unmodified	_VAYWRQAGL_					0	0	0		ENSG00000124172|ENST00000243997|ATP5F1E;nc|ENSG00000180389|Q5VTU8|ATP5F1EP2	ENSG00000124172|ENST00000243997|ATP5F1E	ENSG00000124172|ENST00000243997|ATP5F1E	MULTI-SECPEP	A375_MHC_IP_R2	2	532.6870727539062	2	532.287808	1062.56106	-0.81142	-0.00043191	-0.49306	-0.00026245	-1.3045	-0.00069436	532.2870437206935	62.398	0.35675	63.141	62.925	63.282	0.74263					10	6	2	0	0	0	0.53748	1	23689	23689		13.042	7.3106	1	1319000			57138	3876	41601	41932	55783	55783					0.03228582399970037
VCAACKKPF	9	Unmodified	_VCAACKKPF_					0	0	0		nc|ENSG00000122367|O75112-3|LDB3;nc|ENSG00000122367|O75112-2|LDB3;ENSG00000122367|ENST00000361373|LDB3;nc|ENSG00000122367|O75112-7|LDB3	nc|ENSG00000122367|O75112-3|LDB3	nc|ENSG00000122367|O75112-3|LDB3	MULTI-SECPEP	A375_MHC_IP_R1	1	483.64727783203125	2	483.748616	965.482679	-0.40532	-0.00019607	-0.29621	-0.00014329	-0.70153	-0.00033937	483.7485268722471	46.622	0.55479	46.622	46.295	46.85	0					14	10	2	0	0	0	0.67221	1	16308	16308		13.508	0	1	6503500			57139	3774	41602	41933	55784	55784					-0.0014430950111545826
VCADAGANIF	10	Unmodified	_VCADAGANIF_					0	0	0		tr|U7SSC4|U7SSC4_FUSNURibulose-phosphate3-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpePE=3SV=1	tr|U7SSC4|U7SSC4_FUSNURibulose-phosphate3-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpePE=3SV=1	tr|U7SSC4|U7SSC4_FUSNURibulose-phosphate3-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpePE=3SV=1	MSMS	A375_MHC_IP_R1	1	490.67657470703125	2	490.728935	979.443317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.229	1	69.229	68.729	69.729	0								0	0	0	0.15283	1	25118	25118		11.64	0	1				57140	29628	41603	41934	55785	55785					-0.047227382509845484
VCCCSCSSC	9	Unmodified	_VCCCSCSSC_					0	0	0		ENSG00000205869|ENST00000382171|KRTAP5-1;KRTAP5-1|p.S222F|1|0.38|ENSG00000205869|chr11:1584585-1584585|G/A|missense_variant	ENSG00000205869|ENST00000382171|KRTAP5-1	ENSG00000205869|ENST00000382171|KRTAP5-1	MULTI-MSMS	A375_MHC_IP_R1	1	894.630615234375	1	894.228263	893.220986	-0.39264	-0.00035111	0.050158	4.4852E-05	-0.34248	-0.00030626	894.2295210302677	2.5964	0.62357	2.5964	2.1615	2.7851	0					144	94	2	0	0	0	0.77827	4	531	531;611;613;620		0	0	1	214410			57141	9533	41604	41935	55786;55787;55788;55789	55786					-0.22989543246183075
VCCCSCSSC	9	Unmodified	_VCCCSCSSC_					0	0	0		ENSG00000205869|ENST00000382171|KRTAP5-1;KRTAP5-1|p.S222F|1|0.38|ENSG00000205869|chr11:1584585-1584585|G/A|missense_variant	ENSG00000205869|ENST00000382171|KRTAP5-1	ENSG00000205869|ENST00000382171|KRTAP5-1	MULTI-MSMS	A375_MHC_IP_R2	2	894.628662109375	1	894.228263	893.220986	-0.72002	-0.00064386	0.21228	0.00018983	-0.50774	-0.00045403	894.2296380234274	8.6834	0.32005	9.0985	9.0103	9.3303	0.4151					56	41	2	0	0	0	0.77827	2	2742	2742;2758		0	0	1	193870			57142	9533	41604	41935	55790;55791	55790					-0.22989543246183075
VCCCSCSSC	9	Unmodified	_VCCCSCSSC_					0	0	0		ENSG00000205869|ENST00000382171|KRTAP5-1;KRTAP5-1|p.S222F|1|0.38|ENSG00000205869|chr11:1584585-1584585|G/A|missense_variant	ENSG00000205869|ENST00000382171|KRTAP5-1	ENSG00000205869|ENST00000382171|KRTAP5-1	MULTI-MSMS	A375_MHC_IP_R2	2	894.6278686523438	1	894.228263	893.220986	-0.71982	-0.00064368	0.15499	0.0001386	-0.56483	-0.00050509	894.2297236372555	9.2449	0.40381	9.6919	9.6047	10.008	0.44698					79	48	2	0	0	0	0.77827	3	2896	2896;2906;2968		0	0	1	213720			57143	9533	41604	41935	55792;55793;55794	55792					-0.22989543246183075
VCCCSCSSC	9	Unmodified	_VCCCSCSSC_					0	0	0		ENSG00000205869|ENST00000382171|KRTAP5-1;KRTAP5-1|p.S222F|1|0.38|ENSG00000205869|chr11:1584585-1584585|G/A|missense_variant	ENSG00000205869|ENST00000382171|KRTAP5-1	ENSG00000205869|ENST00000382171|KRTAP5-1	MULTI-MSMS	A375_MHC_IP_R2	2	894.62890625	1	894.228263	893.220986	-0.71976	-0.00064363	0.079814	7.1372E-05	-0.63994	-0.00057226	894.2295365672409	9.8266	0.19445	10.274	10.226	10.421	0.44698					34	23	2	0	0	0	0.77827	1	3066	3066		0	0	1	167690			57144	9533	41604	41935	55795	55795					-0.22989543246183075
VCCSFKKKL	9	Unmodified	_VCCSFKKKL_					0	0	0			REV__ENSG00000073849|ENST00000169298|ST6GAL1	REV__ENSG00000073849|ENST00000169298|ST6GAL1	MULTI-SECPEP	A375_MHC_IP_R2	2	528.6447143554688	2	528.290648	1054.56674	-0.53835	-0.00028441	1.1816	0.00062424	0.64328	0.00033984	528.7933216209696	31.893	0.2	32.63	32.504	32.704	0.73692					5	3	2	0	0	0	0.75466	1	11289	11289		1.8442	0	1	708330	+		57145	16625	41605	41936	55796	55796					0.04164221595806339
VCHFGGILLN	10	Unmodified	_VCHFGGILLN_					0	0	0			REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	MSMS	A375_MHC_IP_R1	1	358.2426452636719	3	358.191788	1071.55354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.304	1	18.304	17.804	18.804	0								0	0	0	0.15642	1	4360	4360		0	0	1		+		57146	16654	41606	41937	55797	55797					0.02062106808102726
VCIIILLTQGD	11	Unmodified	_VCIIILLTQGD_					0	0	0			REV__ENSG00000139974|ENST00000267488|SLC38A6	REV__ENSG00000139974|ENST00000267488|SLC38A6	MSMS	A375_MHC_IP_R2	2	594.7398071289062	2	594.338849	1186.66315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136	1	136.11	135.61	136.61	0.11134								0	0	0	0.1628	1	53437	53437		4.897	0	1		+		57147	19187	41607	41938	55798	55798					0.07728067636730884
VCKCPQNIL	9	Unmodified	_VCKCPQNIL_					0	0	0		IL31RA|p.E16K|1|0.19|ENSG00000164509|chr5:55851616-55851616|G/A|missense_variant	IL31RA|p.E16K|1|0.19|ENSG00000164509|chr5:55851616-55851616|G/A|missense_variant	IL31RA|p.E16K|1|0.19|ENSG00000164509|chr5:55851616-55851616|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	509.7260437011719	2	509.26463	1016.51471	-0.21251	-0.00010822	-0.6776	-0.00034508	-0.89011	-0.0004533	509.2643395411236	69.007	0.40401	69.007	68.717	69.121	0					12	7	2	0	0	0	0.69504	1	25010	25010		4.3292	0	1	1101300			57148	14156	41608	41939	55799	55799					0.0071105818203704985
VCKVNLIF	8	Unmodified	_VCKVNLIF_					0	0	0			REV__ENST00000539506.5_1_12:132269555-132269855:+|nuORF	REV__ENST00000539506.5_1_12:132269555-132269855:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	468.6729431152344	2	468.272781	934.531009	-0.58812	-0.0002754	0.97349	0.00045586	0.38537	0.00018046	468.2730865895063	134.92	0.66002	134.92	134.78	135.44	0					26	12	3	0	0	0	0.77797	1	52028	52028		2.3027	0	1	8811200	+		57149	25943	41609	41940	55800	55800					0.06112507410455237
VCLNWWQW	8	Unmodified	_VCLNWWQW_					0	0	0			REV__ENSG00000185561|ENST00000330676|TLCD2	REV__ENSG00000185561|ENST00000330676|TLCD2	MSMS	A375_MHC_IP_R2	2	567.7005615234375	2	567.763112	1133.51167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.352	1	71.086	70.586	71.586	0.73421								0	0	0	0.16876	1	26671	26671		10.183	0.83596	1		+		57150	21899	41610	41941	55801	55801					-0.04974448880466298
VCLSASTPGQL	11	Unmodified	_VCLSASTPGQL_					0	0	0			REV__ENST00000336798.11_2_1:31351134-31351443:-|nuORF	REV__ENST00000336798.11_2_1:31351134-31351443:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	538.70263671875	2	538.276249	1074.53795	-0.62981	-0.00033901	-2.4195	-0.0013024	-3.0493	-0.0016414	538.2745921637306	57.191	0.35659	57.191	57.007	57.364	0					10	6	2	0	0	0	0.60761	1	20471	20471		43.772	19.752	1	652800	+		57151	23683	41611	41942	55802	55802					0.0036577550035872264
VCLTRLAK	8	Unmodified	_VCLTRLAK_					0	0	0			REV__ENST00000497660.5_1_1:8390216-8404070:+|nuORF	REV__ENST00000497660.5_1_1:8390216-8404070:+|nuORF	MSMS	A375_MHC_IP_R2	2	452.3328857421875	2	452.275855	902.537157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.35	1	137.44	136.94	137.94	0.083969								0	0	0	0.16876	1	53912	53912		2.5775	0	1		+		57152	20252	41612	41943	55803	55803					0.08199025641965818
VCNFFIYI	8	Unmodified	_VCNFFIYI_					0	0	0		ENST00000423599.1_1_7:33420197-33420419:+|nuORF	ENST00000423599.1_1_7:33420197-33420419:+|nuORF	ENST00000423599.1_1_7:33420197-33420419:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	509.72613525390625	2	509.756964	1017.49937	-0.66285	-0.00033789	-0.99604	-0.00050774	-1.6589	-0.00084563	509.756447873735	67.983	0.55945	68.718	68.358	68.918	0.73511					16	10	2	0	0	0	0.77123	1	25719	25719		14.582	2.0501	1	2300200			57153	11760	41613	41944	55804	55804					-0.008674853435081786
VCPHWLLLL	9	Unmodified	_VCPHWLLLL_					0	0	0		ENSG00000178222|ENST00000433731|RNF212	ENSG00000178222|ENST00000433731|RNF212	ENSG00000178222|ENST00000433731|RNF212	MULTI-SECPEP	A375_MHC_IP_R1	1	547.7147216796875	2	547.31498	1092.61541	-0.77164	-0.00042233	0.79456	0.00043487	0.022916	1.2543E-05	547.3150789877707	66.739	0.35803	66.739	66.58	66.938	0					11	6	3	0	0	0	0.73662	1	24214	24214		5.2307	0	1	1408800			57154	8145	41614	41945	55805	55805					0.072804582272056
VCPRPPRGLL	10	Unmodified	_VCPRPPRGLL_					0	0	0		ENST00000588221.5_1_19:9545477-9546142:-|nuORF;ENST00000592292.5_1_19:9529933-9546175:-|nuORF	ENST00000588221.5_1_19:9545477-9546142:-|nuORF	ENST00000588221.5_1_19:9545477-9546142:-|nuORF	MSMS	A375_MHC_IP_R2	2	369.77264404296875	3	369.886699	1106.63827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.456	1	18.052	17.552	18.552	0.59616								0	0	0	0.15637	1	5133	5133		0.15932	0	1				57155	13759	41615	41946	55806	55806					0.08921477344688356
VCVKEIKRLKK	11	Unmodified	_VCVKEIKRLKK_					0	0	0		ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2	ENSG00000102910|ENST00000285737|LONP2	ENSG00000102910|ENST00000285737|LONP2	MSMS	A375_MHC_IP_R2	2	672.4334106445312	2	672.431407	1342.84826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.94	1	129.18	128.68	129.68	0.23946								0	0	0	0.16337	1	50662	50662		1.1933	0.735	1				57156	2402	41616	41947	55807	55807					0.1905509522698594
VCVMTKVFY	9	Unmodified	_VCVMTKVFY_					0	0	0		SLFN12|p.I497V|1|0.41|ENSG00000172123|chr17:35411586-35411586|T/C|missense_variant	SLFN12|p.I497V|1|0.41|ENSG00000172123|chr17:35411586-35411586|T/C|missense_variant	SLFN12|p.I497V|1|0.41|ENSG00000172123|chr17:35411586-35411586|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	364.2524719238281	3	363.853896	1088.53986	0.27224	9.9054E-05	-2.6639	-0.00096926	-2.3916	-0.0008702	364.1877269114907	20.317	0.55718	20.317	20.03	20.587	0					17	10	2	0	0	0	0.69507	1	5184	5184		13.615	5.6695	1	5254100			57157	29204	41617	41948	55808	55808					-0.0008688701539085741
VCVRVRTLWLF	11	Unmodified	_VCVRVRTLWLF_					0	0	0		ENST00000360472.8_1_1:160183409-160183475:+|nuORF	ENST00000360472.8_1_1:160183409-160183475:+|nuORF	ENST00000360472.8_1_1:160183409-160183475:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	465.0040588378906	3	464.604192	1390.79075	-0.58535	-0.00027196	0.55106	0.00025602	-0.034294	-1.5933E-05	464.6044095703224	142.26	0.40466	142.26	141.98	142.38	0					11	7	2	0	0	0	0.73897	1	54584	54584		0.094841	0	1	916460			57158	11030	41618	41949	55809	55809					0.11098253021441451
VCVRVRTLWLF	11	Unmodified	_VCVRVRTLWLF_					0	0	0		ENST00000360472.8_1_1:160183409-160183475:+|nuORF	ENST00000360472.8_1_1:160183409-160183475:+|nuORF	ENST00000360472.8_1_1:160183409-160183475:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	464.604192	1390.79075	-0.42211	-0.00019611	0.78554	0.00036496	0.36343	0.00016885	464.9389246644468	142.18	0.45547	142.21	142.08	142.53	0.030731	-0.026158	0.00015824	NaN	0.094841	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	645850			57159	11030	41618	41949							0.11098253021441451
VCVVCYETI	9	Unmodified	_VCVVCYETI_					0	0	0		ENSG00000039319|ENST00000505560|ZFYVE16;nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16;ENST00000510995.1_1_5:79729945-79735859:+|nuORF;ENST00000512558.5_1_5:79729945-79747536:+|nuORF	ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	MSMS	A375_MHC_IP_R1	1	514.67041015625	2	514.743196	1027.47184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.923	1	98.923	98.423	99.423	0								0	0	0	0.15486	1	36342	36342		13.508	0.97634	1				57160	1158	41619	41950	55810	55810					-0.040797566660558005
VCYSFLGFY	9	Unmodified	_VCYSFLGFY_					0	0	0			REV__ENSG00000197753|ENST00000360215|LHFPL5	REV__ENSG00000197753|ENST00000360215|LHFPL5	MSMS	A375_MHC_IP_R1	1	549.6491088867188	2	549.751879	1097.4892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.712	1	44.712	44.212	45.212	0								0	0	0	0.15486	1	15613	15613		12.532	0.29089	1		+		57161	22310	41620	41951	55811	55811					-0.055640930687332
VDCICNEPMD	10	Unmodified	_VDCICNEPMD_					0	0	0			REV__ENSG00000147231|ENST00000372548|RADX	REV__ENSG00000147231|ENST00000372548|RADX	MSMS	A375_MHC_IP_R1	1	380.1137390136719	3	380.145299	1137.41407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.973	1	66.973	66.473	67.473	0								0	0	0	0.15591	1	24265	24265		0.69767	0	1		+		57162	19579	41621	41952	55812	55812					-0.14914386653777
VDDEILSHTGI	11	Unmodified	_VDDEILSHTGI_					0	0	0			REV__tr|U7SMG3|U7SMG3_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recGPE=3SV=1	REV__tr|U7SMG3|U7SMG3_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recGPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	400.9375305175781	3	400.203187	1197.58773	-0.59237	-0.00023707	0.61767	0.00024719	0.025297	1.0124E-05	400.2033700708892	30.494	0.95966	30.494	30.15	31.109	0					49	18	4	0	0	0	0.67023	2	9631	9631;9852		17.863	4.3445	1	14742000	+		57163	28301	41622	41953	55813;55814	55813					-0.0031581829000515427
VDDEILSHTGI	11	Unmodified	_VDDEILSHTGI_					0	0	0			REV__tr|U7SMG3|U7SMG3_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recGPE=3SV=1	REV__tr|U7SMG3|U7SMG3_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recGPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	600.2011108398438	2	599.801143	1197.58773	-0.71107	-0.0004265	0.30175	0.00018099	-0.40931	-0.00024551	599.8013033748836	30.403	0.75824	30.403	30.15	30.908	0					37	14	3	0	0	0	0.26114	1	9632	9632		62.573	33.491	1	9233000	+		57164	28301	41622	41953	55815	55815					-0.0031581829000515427
VDDEILSHTGI	11	Unmodified	_VDDEILSHTGI_					0	0	0			REV__tr|U7SMG3|U7SMG3_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recGPE=3SV=1	REV__tr|U7SMG3|U7SMG3_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recGPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	400.9375305175781	3	400.203187	1197.58773	-0.59237	-0.00023707	0.61767	0.00024719	0.025297	1.0124E-05	400.2033700708892	30.494	0.95966	30.494	30.15	31.109	0					49	18	4	0	0	0	0.90584	1	9631	9631		17.863	4.3445	1	14742000	+		57165	28301	41622	41953	55816	55816					-0.0031581829000515427
VDDEILSHTGI	11	Unmodified	_VDDEILSHTGI_					0	0	0			REV__tr|U7SMG3|U7SMG3_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recGPE=3SV=1	REV__tr|U7SMG3|U7SMG3_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recGPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	400.60308837890625	3	400.203187	1197.58773	-0.47617	-0.00019056	0.23677	9.4755E-05	-0.2394	-9.581E-05	400.20323692910523	29.856	1.011	30.555	30.134	31.145	0.69872					54	19	4	0	0	0	0.61954	1	10382	10382		21.799	0	1	27713000	+		57166	28301	41622	41953	55817	55817					-0.0031581829000515427
VDDEILSHTGI	11	Unmodified	_VDDEILSHTGI_					0	0	0			REV__tr|U7SMG3|U7SMG3_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recGPE=3SV=1	REV__tr|U7SMG3|U7SMG3_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recGPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	600.200927734375	2	599.801143	1197.58773	-0.99692	-0.00059795	-0.42285	-0.00025362	-1.4198	-0.00085158	599.8012807463369	29.811	0.91062	30.51	29.981	30.892	0.69872					43	17	3	0	0	0	0.1757	1	10385	10385		71.922	37.521	1	10501000	+		57167	28301	41622	41953	55818	55818					-0.0031581829000515427
VDDEILSHTGI	11	Unmodified	_VDDEILSHTGI_					0	0	0			REV__tr|U7SMG3|U7SMG3_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recGPE=3SV=1	REV__tr|U7SMG3|U7SMG3_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recGPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	400.60308837890625	3	400.203187	1197.58773	-0.47617	-0.00019056	0.23677	9.4755E-05	-0.2394	-9.581E-05	400.20323692910523	29.856	1.011	30.555	30.134	31.145	0.69872					54	19	4	0	0	0	0.75408	1	10382	10382		21.799	0	1	27713000	+		57168	28301	41622	41953	55819	55819					-0.0031581829000515427
VDDEILSHTGI	11	Unmodified	_VDDEILSHTGI_					0	0	0			REV__tr|U7SMG3|U7SMG3_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recGPE=3SV=1	REV__tr|U7SMG3|U7SMG3_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recGPE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	599.801143	1197.58773	-0.71107	-0.0004265	0.30175	0.00018099	-0.40931	-0.00024551	599.8013033748836	30.403	0.75824	30.403	30.15	30.908	0	-0.05374	0.00020017	NaN	71.922	37	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9233000	+		57169	28301	41622	41953							-0.0031581829000515427
VDDERKPENLT	11	Unmodified	_VDDERKPENLT_					0	0	0			REV__ENSG00000165832|ENST00000298746|TRUB1	REV__ENSG00000165832|ENST00000298746|TRUB1	MULTI-SECPEP	A375_MHC_IP_R1	1	658.7277221679688	2	658.328056	1314.64156	-0.43769	-0.00028814	-0.059527	-3.9188E-05	-0.49722	-0.00032733	658.3280086189575	55.659	0.55978	55.659	55.431	55.991	0					29	10	4	0	0	0	0.7254	1	19900	19900		38.615	6.979	1	17937000	+		57170	20629	41623	41954	55820	55820					-0.003176458582856867
VDDFETNVD	9	Unmodified	_VDDFETNVD_					0	0	0			REV__nc|ENSG00000187790|Q8IYD8-3|FANCM	REV__nc|ENSG00000187790|Q8IYD8-3|FANCM	MSMS	A375_MHC_IP_R2	2	527.1533813476562	2	527.222194	1052.42983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.768	1	56.518	56.018	57.018	0.75015								0	0	0	0.14767	1	21071	21071		25.399	9.5521	1		+		57171	22048	41624	41955	55821	55821					-0.09428317549236453
VDDLDQAYHIQ	11	Unmodified	_VDDLDQAYHIQ_					0	0	0			REV__nc|ENSG00000147905|Q8N3Z6-2|ZCCHC7	REV__nc|ENSG00000147905|Q8N3Z6-2|ZCCHC7	MSMS	A375_MHC_IP_R1	1	658.7277221679688	2	658.809499	1315.60444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.627	1	55.627	55.127	56.127	0								0	0	0	0.13869	1	19900	19900		27.629	4.8925	1		+		57172	19612	41625	41956	55822	55822					-0.04073317404049703
VDDLDQAYHIQ	11	Unmodified	_VDDLDQAYHIQ_					0	0	0			REV__nc|ENSG00000147905|Q8N3Z6-2|ZCCHC7	REV__nc|ENSG00000147905|Q8N3Z6-2|ZCCHC7	MSMS	A375_MHC_IP_R2	2	658.7274780273438	2	658.809499	1315.60444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.023	1	55.774	55.274	56.274	0.75075								0	0	0	0.14837	1	20777	20777		21.537	3.3906	1		+		57173	19612	41625	41956	55823	55823					-0.04073317404049703
VDDLEIQRAY	10	Unmodified	_VDDLEIQRAY_					0	0	0		ENST00000311841.7_2_1:54618851-54661198:-|nuORF;ENST00000420054.5_1_1:54651905-54661258:-|nuORF;ENST00000490863.5_1_1:54651905-54653456:-|nuORF;ENST00000528287.5_1_1:54640294-54656520:-|nuORF;nc|ENSG00000256407|Q6IPT4-4|CYB5RL;ENSG00000215883|ENST00000534324|CYB5RL	ENST00000311841.7_2_1:54618851-54661198:-|nuORF	ENST00000311841.7_2_1:54618851-54661198:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	611.70703125	2	611.309135	1220.60372	-0.66259	-0.00040505	-0.23402	-0.00014306	-0.89661	-0.00054811	611.3089708533446	30.4	0.80774	30.4	30.049	30.857	0					31	15	3	0	0	0	0.48529	1	9620	9620		29.082	7.5446	1	5827900			57174	10632	41626	41957	55824	55824					0.002238879469132371
VDDLEIQRAY	10	Unmodified	_VDDLEIQRAY_					0	0	0		ENST00000311841.7_2_1:54618851-54661198:-|nuORF;ENST00000420054.5_1_1:54651905-54661258:-|nuORF;ENST00000490863.5_1_1:54651905-54653456:-|nuORF;ENST00000528287.5_1_1:54640294-54656520:-|nuORF;nc|ENSG00000256407|Q6IPT4-4|CYB5RL;ENSG00000215883|ENST00000534324|CYB5RL	ENST00000311841.7_2_1:54618851-54661198:-|nuORF	ENST00000311841.7_2_1:54618851-54661198:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	611.7089233398438	2	611.309135	1220.60372	-0.97079	-0.00059345	0.61617	0.00037667	-0.35462	-0.00021678	611.3094415986751	29.807	0.55392	30.506	30.236	30.79	0.69872					25	10	3	0	0	0	0.74754	1	10409	10409		17.113	0	1	6511700			57175	10632	41626	41957	55825	55825					0.002238879469132371
VDDPDLTCL	9	Unmodified	_VDDPDLTCL_					0	0	0			REV__ENSG00000198355|ENST00000360612|PIM3	REV__ENSG00000198355|ENST00000360612|PIM3	MULTI-MSMS	A375_MHC_IP_R1	1	495.65167236328125	2	495.726058	989.437562	-0.59016	-0.00029256	-1.4851	-0.00073619	-2.0752	-0.0010287	495.72310587551954	86.088	0.20076	86.088	85.971	86.172	0					5	3	2	0	0	0	0.64808	1	31522	31522		11.64	0.52583	1	403480	+		57176	22363	41627	41958	55826	55826					-0.05757881553324751
VDDQDEGSPV	10	Unmodified	_VDDQDEGSPV_					0	0	0		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	MULTI-MSMS	A375_MHC_IP_R2	2	531.1248779296875	2	530.725101	1059.43565	-0.61648	-0.00032718	2.3487	0.0012465	1.7323	0.00091935	530.7257461823671	78.025	0.6147	78.768	78.416	79.031	0.74293					15	11	2	0	0	0	0.6502	1	29620	29620		17.113	4.8722	1	1120600			57177	5392	41628	41959	55827	55827					-0.0916921903756247
VDDQITDHA	9	Unmodified	_VDDQITDHA_					0	0	0			REV__nc|ENSG00000035664|Q9UIK4-2|DAPK2	REV__nc|ENSG00000035664|Q9UIK4-2|DAPK2	MULTI-MSMS	A375_MHC_IP_R1	1	508.19537353515625	2	507.230353	1012.44615	-0.32534	-0.00016502	-0.18088	-9.175E-05	-0.50623	-0.00025677	507.2302038858458	34.837	2.5385	34.837	34.507	37.045	0					118	49	3	0	0	0	0.70307	1	11934	11934		6.7232	0	1	44441000	+		57178	27096	41629	41960	55828	55828					-0.059571915924834684
VDDSNDHVL	9	Unmodified	_VDDSNDHVL_					0	0	0		ENSG00000066629|ENST00000262233|EML1;nc|ENSG00000066629|O00423-3|EML1;EML1|p.S354F|1|0.76|ENSG00000066629|chr14:99907690-99907690|C/T|missense_variant	ENSG00000066629|ENST00000262233|EML1	ENSG00000066629|ENST00000262233|EML1	MULTI-MSMS	A375_MHC_IP_R2	2	508.1951904296875	2	507.230353	1012.44615	-1.0389	-0.00052697	0.026242	1.3311E-05	-1.0127	-0.00051366	507.2302940721026	34.161	2.1775	34.914	34.399	36.576	0.75225					105	42	4	0	0	0	0.61998	1	12574	12574		13.906	0	1	40216000			57179	1416	41630	41961	55829	55829					-0.059571915924721
VDDTDPHFK	9	Unmodified	_VDDTDPHFK_					0	0	0			REV__ENST00000485798.5_1_19:49403599-49425678:+|nuORF	REV__ENST00000485798.5_1_19:49403599-49425678:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	537.1926879882812	2	537.248546	1072.48254	-0.96725	-0.00051965	-2.6699	-0.0014344	-3.6372	-0.0019541	537.2472926821538	36.7	0.66092	36.7	36.184	36.845	0					17	12	2	0	0	0	0.60917	1	12335	12335		25.399	0	1	1284500	+		57180	17338	41631	41962	55830	55830					-0.05080314695760535
VDDTDPHFK	9	Unmodified	_VDDTDPHFK_					0	0	0			REV__ENST00000485798.5_1_19:49403599-49425678:+|nuORF	REV__ENST00000485798.5_1_19:49403599-49425678:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	537.64794921875	2	537.248546	1072.48254	-0.99702	-0.00053565	-0.95162	-0.00051126	-1.9486	-0.0010469	537.2483481091937	36.058	0.51095	36.822	36.538	37.049	0.76406					14	9	3	0	0	0	0.69507	1	13152	13152		19.257	0	1	2296400	+		57181	17338	41631	41962	55831	55831					-0.05080314695760535
VDEHVCFY	8	Unmodified	_VDEHVCFY_					0	0	0		ABCA7|p.W903C|1|0.43|ENSG00000064687|chr19:1051179-1051179|G/T|missense_variant	ABCA7|p.W903C|1|0.43|ENSG00000064687|chr19:1051179-1051179|G/T|missense_variant	ABCA7|p.W903C|1|0.43|ENSG00000064687|chr19:1051179-1051179|G/T|missense_variant	MSMS	A375_MHC_IP_R1	1	506.17230224609375	2	506.21566	1010.41677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.956	1	74.956	74.456	75.456	0								0	0	0	0.16876	1	27305	27305		10.183	2.8942	1				57182	7	41632	41963	55832	55832					-0.08802427142313718
VDEKWSVINGD	11	Unmodified	_VDEKWSVINGD_					0	0	0			REV__ADGRG4|p.E209K|1|0.21|ENSG00000156920|chrX:136323332-136323332|G/A|missense_variant	REV__ADGRG4|p.E209K|1|0.21|ENSG00000156920|chrX:136323332-136323332|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	632.0614624023438	2	631.306592	1260.59863	-1.1089	-0.00070009	2.499	0.0015776	1.3901	0.00087755	631.8106176058158	29.985	0.2021	30.684	30.537	30.739	0.69872					5	3	2	0	0	0	0.9754	1	10522	10522		12.241	6.9438	1	763650	+		57183	15329	41633	41964	55833	55833					-0.021244159157276954
VDERRVIKY	9	Unmodified	_VDERRVIKY_					0	0	0			REV__nc|ENSG00000145888|P23415|GLRA1	REV__nc|ENSG00000145888|P23415|GLRA1	MULTI-SECPEP	A375_MHC_IP_R1	1	393.92779541015625	3	393.227779	1176.66151	0.28097	0.00011049	-1.2322	-0.00048455	-0.95125	-0.00037406	393.56181316195443	22.934	0.15129	22.934	22.823	22.974	0					4	2	2	0	0	0	0.775	1	6181	6181		10.8	0.48427	1	523390	+		57184	19500	41634	41965	55834	55834					0.08024194662993978
VDEVKQRGL	9	Unmodified	_VDEVKQRGL_					0	0	0		nc|ENSG00000126467|Q9UJT2-2|TSKS;ENSG00000126467|ENST00000246801|TSKS	nc|ENSG00000126467|Q9UJT2-2|TSKS	nc|ENSG00000126467|Q9UJT2-2|TSKS	MULTI-MSMS	A375_MHC_IP_R2	2	522.6957397460938	2	522.29583	1042.57711	-0.54446	-0.00028437	-0.31534	-0.0001647	-0.85979	-0.00044907	522.2955828613711	125.68	1.8697	125.98	125.72	127.59	0.2951					63	36	2	0	0	0	0.64136	1	49365	49365		12.241	0.60036	1	51455000			57185	4046	41635	41966	55835	55835					0.057522438462456194
VDFERSFQE	9	Unmodified	_VDFERSFQE_					0	0	0		nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1	nc|ENSG00000116127|Q8TCU4-3|ALMS1	nc|ENSG00000116127|Q8TCU4-3|ALMS1	MULTI-MSMS	A375_MHC_IP_R1	1	579.7297973632812	2	578.767103	1155.51965	0.16333	9.4531E-05	-0.32338	-0.00018716	-0.16005	-9.2631E-05	578.766767566555	48.322	0.70915	48.322	48.02	48.729	0					31	13	3	0	0	0	0.67332	1	17129	17129		9.3831	0.40688	1	10522000			57186	3371	41636	41967	55836	55836					-0.051886431499724495
VDFKMRIYEYP	11	Unmodified	_VDFKMRIYEYP_					0	0	0			REV__ENST00000530037.1_1_11:9445350-9446836:+|nuORF	REV__ENST00000530037.1_1_11:9445350-9446836:+|nuORF	MSMS	A375_MHC_IP_R1	1	487.66925048828125	3	487.579601	1459.71697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.721	1	41.721	41.221	42.221	0								0	0	0	0.16313	1	14422	14422		2.4348	0.18206	1		+		57187	22569	41637	41968	55837	55837					0.00550240068491803
VDFKMRIYEYP	11	Unmodified	_VDFKMRIYEYP_					0	0	0			REV__ENST00000530037.1_1_11:9445350-9446836:+|nuORF	REV__ENST00000530037.1_1_11:9445350-9446836:+|nuORF	MSMS	A375_MHC_IP_R2	2	487.6687927246094	3	487.579601	1459.71697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.867	1	41.642	41.142	42.142	0.77451								0	0	0	0.16313	1	15147	15147		2.4348	0.18206	1		+		57188	22569	41637	41968	55838	55838					0.00550240068491803
VDFLVILYEV	10	Unmodified	_VDFLVILYEV_					0	0	0		TUSC2|p.P104L|1|0.25|ENSG00000114383|chr3:50326143-50326143|G/A|missense_variant	TUSC2|p.P104L|1|0.25|ENSG00000114383|chr3:50326143-50326143|G/A|missense_variant	TUSC2|p.P104L|1|0.25|ENSG00000114383|chr3:50326143-50326143|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	403.9192199707031	3	403.897035	1208.66928	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.793	1	21.404	20.904	21.904	0.61029								0	0	0	0.15435	1	6501	6501		3.5871	0.5148	1				57189	30100	41638	41969	55839	55839					0.07328909139891948
VDFSWIWLHTY	11	Unmodified	_VDFSWIWLHTY_					0	0	0		ENST00000520416.1_1_8:71128979-71314410:-|nuORF	ENST00000520416.1_1_8:71128979-71314410:-|nuORF	ENST00000520416.1_1_8:71128979-71314410:-|nuORF	MSMS	A375_MHC_IP_R2	2	489.6138610839844	3	489.574955	1465.70304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.922	1	56.672	56.172	57.172	0.75015								0	0	0	0.16224	1	21131	21131		7.0371	3.1912	1				57190	12994	41639	41970	55840	55840					-0.011186693683384874
VDGSLQLAFQ	10	Unmodified	_VDGSLQLAFQ_					0	0	0			REV__HIVEP3|p.P1251S|1|0.39|ENSG00000127124|chr1:41581047-41581047|G/A|missense_variant	REV__HIVEP3|p.P1251S|1|0.39|ENSG00000127124|chr1:41581047-41581047|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	539.1898193359375	2	539.282389	1076.55022	-0.81806	-0.00044116	-2.7018	-0.001457	-3.5199	-0.0018982	539.7811990046238	67.644	1.1206	68.38	68.001	69.122	0.73631					33	21	3	0	0	0	0.77204	1	25635	25635		27.629	9.4825	1	4326100	+		57191	26747	41640	41971	55841	55841					0.01501135235048423
VDGTRPDNL	9	Unmodified	_VDGTRPDNL_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16;nc|ENSG00000221843|Q68DN1|SPATA31H1	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MSMS	A375_MHC_IP_R2	2	493.6702575683594	2	493.748713	985.482873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.593	1	94.337	93.837	94.837	0.74474								0	0	0	0.14905	1	35580	35580		23.148	2.7339	1				57192	9666	41641	41972	55842	55842					-0.010448949759165771
VDHQDQRDWIK	11	Unmodified	_VDHQDQRDWIK_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MSMS	A375_MHC_IP_R2	2	480.4718017578125	3	480.572385	1438.69533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.808	1	26.468	25.968	26.968	0.65992								0	0	0	0.16316	1	8663	8663		2.2527	0.16876	1				57193	7831	41642	41973	55843	55843					-0.006474286359207326
VDIGGHRW	8	Unmodified	_VDIGGHRW_					0	0	0		ENSG00000219481|ENST00000430580|NBPF1;nc|ENSG00000219481|Q3BBV0|NBPF1	ENSG00000219481|ENST00000430580|NBPF1	ENSG00000219481|ENST00000430580|NBPF1	MULTI-MSMS	A375_MHC_IP_R1	1	470.6431579589844	2	470.243401	938.472249	-0.24115	-0.0001134	0.054553	2.5653E-05	-0.18659	-8.7745E-05	470.2434096795168	37.581	0.40956	37.581	37.351	37.761	0					11	7	2	0	0	0	0.71817	1	12698	12698		29.082	16.55	1	2532900			57194	9660	41643	41974	55844	55844					0.0005516716032616387
VDISLILSEA	10	Unmodified	_VDISLILSEA_					0	0	0		nc|ENSG00000161542|Q14558|PRPSAP1;ENSG00000161542|ENST00000446526|PRPSAP1	nc|ENSG00000161542|Q14558|PRPSAP1	nc|ENSG00000161542|Q14558|PRPSAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	530.3494873046875	2	530.300247	1058.58594	-0.53376	-0.00028305	-4.0325	-0.0021384	-4.5662	-0.0024215	530.8009120199587	87.722	0.91016	88.454	88.066	88.976	0.7318					21	17	2	0	0	0	0.87163	1	33373	33373		13.906	0.86358	1	1949200			57195	6475	41644	41975	55845	55845					0.05899172692056709
VDKLQIHHLKY	11	Unmodified	_VDKLQIHHLKY_					0	0	0			REV__ENSG00000140057|ENST00000267584|AK7	REV__ENSG00000140057|ENST00000267584|AK7	MULTI-SECPEP	A375_MHC_IP_R1	1	697.802001953125	2	697.401161	1392.78777	-0.82716	-0.00057686	0.51388	0.00035838	-0.31329	-0.00021849	697.4021465807893	130.18	0.66	130.18	129.7	130.36	0					15	12	2	0	0	0	0.98673	1	50080	50080		14.405	9.1085	1	10210000	+		57196	19193	41645	41976	55846	55846					0.10708701168277912
VDKNTKIAY	9	Unmodified	_VDKNTKIAY_					0	0	0		CLCA1|p.M550I|1|0.3|ENSG00000016490|chr1:86493569-86493569|G/A|missense_variant	CLCA1|p.M550I|1|0.3|ENSG00000016490|chr1:86493569-86493569|G/A|missense_variant	CLCA1|p.M550I|1|0.3|ENSG00000016490|chr1:86493569-86493569|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	526.6923828125	2	526.292756	1050.57096	-0.45768	-0.00024087	-0.50402	-0.00026526	-0.96169	-0.00050613	526.2924124786857	61.865	0.45988	61.865	61.534	61.994	0					12	8	2	0	0	0	0.53748	1	22353	22353		18.146	8.0724	1	1667500			57197	533	41646	41977	55847	55847					0.04769725614687559
VDKNTKIAY	9	Unmodified	_VDKNTKIAY_					0	0	0		CLCA1|p.M550I|1|0.3|ENSG00000016490|chr1:86493569-86493569|G/A|missense_variant	CLCA1|p.M550I|1|0.3|ENSG00000016490|chr1:86493569-86493569|G/A|missense_variant	CLCA1|p.M550I|1|0.3|ENSG00000016490|chr1:86493569-86493569|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	526.6920776367188	2	526.292756	1050.57096	-0.76152	-0.00040078	-0.26462	-0.00013927	-1.0261	-0.00054005	526.2926452957976	60.948	0.30227	61.693	61.566	61.869	0.74503					9	5	2	0	0	0	0.67483	1	23128	23128		10.074	0	1	2460500			57198	533	41646	41977	55848	55848					0.04769725614687559
VDKVSRRQRPD	11	Unmodified	_VDKVSRRQRPD_					0	0	0		ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	MSMS	A375_MHC_IP_R2	2	452.64227294921875	3	452.588258	1354.74294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.987	1	57.737	57.237	58.237	0.75015								0	0	0	0.16138	1	21546	21546		6.2344	1.8282	1				57199	6943	41647	41978	55849	55849					0.07976270354924964
VDKVTGRF	8	Unmodified	_VDKVTGRF_					0	0	0		ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	MULTI-SECPEP	A375_MHC_IP_R1	1	461.66107177734375	2	461.261259	920.507966	-0.34035	-0.00015699	0.01241	5.7241E-06	-0.32794	-0.00015126	461.26121662893996	32.169	0.96622	32.169	31.718	32.684	0					43	18	3	0	0	0	0.38613	1	10270	10270		63.961	11.692	1	47241000			57200	7651	41648	41979	55850	55850					0.0445320461733445
VDKWSFRGAK	10	Unmodified	_VDKWSFRGAK_					0	0	0			REV__ENSG00000138759|ENST00000512123|FRAS1	REV__ENSG00000138759|ENST00000512123|FRAS1	MSMS	A375_MHC_IP_R2	2	398.5875549316406	3	398.552374	1192.63529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.925	1	21.535	21.035	22.035	0.61029								0	0	0	0.15391	1	6551	6551		4.7159	1.6437	1		+		57201	19118	41649	41980	55851	55851					0.04667925491526148
VDLDSSGEFA	10	Unmodified	_VDLDSSGEFA_					0	0	0		nc|ENSG00000124782|Q92766-5|RREB1;nc|ENSG00000124782|Q92766-3|RREB1;nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1	nc|ENSG00000124782|Q92766-5|RREB1	nc|ENSG00000124782|Q92766-5|RREB1	MULTI-MSMS	A375_MHC_IP_R1	1	522.2103881835938	2	520.232561	1038.45057	-0.65063	-0.00033848	0.26273	0.00013668	-0.3879	-0.0002018	520.2326875050212	40.003	1.6249	40.003	39.238	40.863	0					83	31	5	0	0	0	0.70651	1	13699	13699		9.3831	9.3831	1	107810000			57202	3927	41650	41981	55852	55852					-0.06711727169545156
VDLESVRSF	9	Unmodified	_VDLESVRSF_					0	0	0			REV__nc|ENSG00000100478|Q9Y587-4|AP4S1	REV__nc|ENSG00000100478|Q9Y587-4|AP4S1	MULTI-MSMS	A375_MHC_IP_R2	2	526.734619140625	2	526.274564	1050.53457	-0.77351	-0.00040708	0.80071	0.00042139	0.027203	1.4316E-05	526.2746533746654	60.311	0.35873	61.056	60.801	61.16	0.74503					9	6	2	0	0	0	0.17338	1	22798	22798		39.95	13.066	1	692880	+		57203	27142	41651	41982	55853	55853					0.011328487180207958
VDLFLIKYG	9	Unmodified	_VDLFLIKYG_					0	0	0			REV__ENSG00000136731|ENST00000259253|UGGT1	REV__ENSG00000136731|ENST00000259253|UGGT1	MSMS	A375_MHC_IP_R1	1	534.3141479492188	2	534.310418	1066.60628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.236	1	79.236	78.736	79.736	0								0	0	0	0.15486	1	28922	28922		4.3292	0	1		+		57204	18955	41652	41983	55854	55854					0.07564388142509415
VDLHIHLT	8	Unmodified	_VDLHIHLT_					0	0	0			REV__nc|ENSG00000135801|O75529-2|TAF5L	REV__nc|ENSG00000135801|O75529-2|TAF5L	MULTI-MSMS	A375_MHC_IP_R1	1	474.69219970703125	2	474.269084	946.523616	-0.48703	-0.00023098	0.23389	0.00011093	-0.25314	-0.00012005	474.26918429236014	54.866	0.55771	54.866	54.619	55.177	0					21	10	3	0	0	0	0.71451	1	19547	19547		30.225	1.1432	1	3761200	+		57205	18885	41653	41984	55855	55855					0.048214911343848144
VDLKRPLRKLI	11	Unmodified	_VDLKRPLRKLI_					0	0	0			REV__ENSG00000124006|ENST00000404537|OBSL1	REV__ENSG00000124006|ENST00000404537|OBSL1	MSMS	A375_MHC_IP_R1	1	450.9896545410156	3	450.96964	1349.88709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.199	1	32.199	31.699	32.699	0								0	0	0	0.16336	1	10383	10383		1.2148	1.0749	1		+		57206	18266	41654	41985	55856	55856					0.22614143853047608
VDLSRETGY	9	Unmodified	_VDLSRETGY_					0	0	0			REV__ENST00000492808.5_1_1:26644456-26645257:+|nuORF	REV__ENST00000492808.5_1_1:26644456-26645257:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	520.6721801757812	2	520.256371	1038.49819	-0.7529	-0.0003917	-0.23393	-0.0001217	-0.98683	-0.00051341	520.2562397415011	44.661	0.71445	45.43	45.035	45.75	0.7691					31	13	3	0	0	0	0.64136	1	16601	16601		12.241	0	1	4626300	+		57207	25415	41655	41986	55857	55857					-0.019520281786981286
VDLTLLRPI	9	Unmodified	_VDLTLLRPI_					0	0	0			REV__ENSG00000135436|ENST00000257894|FAM186B	REV__ENSG00000135436|ENST00000257894|FAM186B	MULTI-MSMS	A375_MHC_IP_R2	2	520.7283935546875	2	520.329142	1038.64373	-0.97686	-0.00050829	-0.30197	-0.00015712	-1.2788	-0.00066541	520.3289644016882	24.451	0.50706	25.095	24.907	25.414	0.64368					13	9	2	0	0	0	0.6324	1	8045	8045		13.042	0	1	5129300	+		57208	18852	41656	41987	55858	55858					0.12595479408128085
VDMHQMEENL	10	Unmodified	_VDMHQMEENL_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MSMS	A375_MHC_IP_R1	1	623.1842651367188	2	623.265555	1244.51656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.24	1	66.24	65.74	66.74	0								0	0	0	0.14673	1	23983	23983		24.021	2.4836	1		+		57209	17912	41657	41988	55859	55859					-0.09591977590639544
VDMNEPNAY	9	Unmodified	_VDMNEPNAY_					0	0	0		ENST00000498524.5_1_3:15727727-15838055:-|nuORF;nc|ENSG00000206560|O15084-2|ANKRD28;nc|ENSG00000206560|O15084|ANKRD28;ENSG00000206560|ENST00000683139|ANKRD28;nc|ENSG00000206560|O15084-1|ANKRD28	ENST00000498524.5_1_3:15727727-15838055:-|nuORF	ENST00000498524.5_1_3:15727727-15838055:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	526.637939453125	2	526.721307	1051.42806	-0.41735	-0.00021983	-0.99528	-0.00052423	-1.4126	-0.00074406	526.7220028304952	89.196	0.15156	89.196	89.069	89.221	0					4	2	2	0	0	0	0.77834	1	32737	32737		4.756	2.6963	1	655660			57210	9544	41658	41989	55860	55860					-0.09559649838843143
VDNKELILY	9	Unmodified	_VDNKELILY_					0	0	0			REV__ENSG00000135605|ENST00000381501|TEC	REV__ENSG00000135605|ENST00000381501|TEC	MULTI-MSMS	A375_MHC_IP_R2	2	554.20751953125	2	553.808239	1105.60193	-0.67457	-0.00037358	0.054808	3.0353E-05	-0.61977	-0.00034323	553.8078303345529	90.416	0.91685	91.151	90.496	91.413	0.7345					24	17	2	0	0	0	0.3489	1	34403	34403		36.127	1.7253	1	1935800	+		57211	18868	41659	41990	55861	55861					0.05334878928965736
VDNQLLHVKDL	11	Unmodified	_VDNQLLHVKDL_					0	0	0		nc|ENSG00000178125|Q7Z4L9-2|PPP1R42;ENSG00000178125|ENST00000685739|PPP1R42;nc|ENSG00000178125|Q7Z4L9|PPP1R42	nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	MULTI-SECPEP	A375_MHC_IP_R1	1	432.3096923828125	3	431.910227	1292.70885	-0.27014	-0.00011668	0.0032192	1.3904E-06	-0.26692	-0.00011529	431.9102510759585	36.962	0.65701	36.962	36.644	37.301	0					30	12	3	0	0	0	0.99089	1	12398	12398		13.535	11.451	1	11719000			57212	8136	41660	41991	55862	55862					0.07420429143326146
VDNQLLHVKDL	11	Unmodified	_VDNQLLHVKDL_					0	0	0		nc|ENSG00000178125|Q7Z4L9-2|PPP1R42;ENSG00000178125|ENST00000685739|PPP1R42;nc|ENSG00000178125|Q7Z4L9|PPP1R42	nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	MULTI-MSMS	A375_MHC_IP_R2	2	432.6584167480469	3	431.910227	1292.70885	-0.36587	-0.00015802	-0.19623	-8.4752E-05	-0.5621	-0.00024277	431.91011399626507	36.051	0.61222	36.814	36.486	37.099	0.76338					28	11	3	0	0	0	0.73388	1	13033	13033		5.1984	2.3552	1	19270000			57213	8136	41660	41991	55863	55863					0.07420429143326146
VDPAKGLFY	9	Unmodified	_VDPAKGLFY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	A375_MHC_IP_R1	1	505.6501159667969	2	505.271293	1008.52803	-0.36944	-0.00018667	-0.75915	-0.00038358	-1.1286	-0.00057024	505.27094860320597	74.981	0.91132	74.981	74.451	75.362	0					29	17	4	0	0	0	0.51106	1	27238	27238		19.257	6.7254	1	4219500			57214	5456	41661	41992	55864	55864					0.02410955557274974
VDPAKGLFYF	10	Unmodified	_VDPAKGLFYF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-SECPEP	A375_MHC_IP_R1	1	578.1559448242188	2	578.8055	1155.59645	0.19763	0.00011439	0.31164	0.00018038	0.50927	0.00029477	578.805750484163	112.93	0.50552	112.93	112.59	113.09	0					12	9	2	0	0	0	0.90513	1	41335	41335		12.241	0	1	948870			57215	5456	41662	41993	55865	55865					0.024872001371250008
VDPHGFISY	9	Unmodified	_VDPHGFISY_					0	0	0		ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50;nc|ENSG00000105197|Q3ZCQ8-3|TIMM50;TIMM50|p.R217C|1|0.25|ENSG00000105197|chr19:39486448-39486448|C/T|missense_variant	ENSG00000105197|ENST00000607714|TIMM50	ENSG00000105197|ENST00000607714|TIMM50	MULTI-MSMS	A375_MHC_IP_R1	1	517.6874389648438	2	517.750724	1033.4869	-0.93801	-0.00048565	0.17668	9.1478E-05	-0.76132	-0.00039417	517.750900764633	67.993	0.50519	67.993	67.754	68.26	0					23	9	3	0	0	0	0.29981	1	24680	24680		30.637	5.2372	1	2176600			57216	2574	41663	41994	55866	55866					-0.028508054821713813
VDPQFLTY	8	Unmodified	_VDPQFLTY_					0	0	0		nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1	nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-SECPEP	A375_MHC_IP_R1	1	492.1478271484375	2	491.74765	981.480748	-0.23117	-0.00011368	0.23876	0.00011741	0.0075904	3.7326E-06	491.7477522278151	96.96	0.75901	96.96	96.529	97.288	0					26	14	3	0	0	0	0.37815	1	35584	35584		62.573	34.086	1	3038000			57217	9384	41664	41995	55867	55867					-0.010733237137287688
VDPQFLTY	8	Unmodified	_VDPQFLTY_					0	0	0		nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1	nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-SECPEP	A375_MHC_IP_R2	2	491.471923828125	2	491.74765	981.480748	-0.53977	-0.00026543	0.31953	0.00015713	-0.22025	-0.00010831	491.7476925753341	96.241	0.8608	96.991	96.653	97.513	0.75045					30	16	3	0	0	0	0.1789	1	36551	36551		99.799	52.878	1	3850000			57218	9384	41664	41995	55868	55868					-0.010733237137287688
VDPSVYGY	8	Unmodified	_VDPSVYGY_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MSMS	A375_MHC_IP_R1	1	899.3495483398438	1	899.414525	898.407249	-0.24793	-0.00022299	0.014666	1.3191E-05	-0.23326	-0.0002098	899.4144494915604	64.877	0.45615	64.877	64.649	65.105	0					13	8	2	0	0	0	0.68907	1	23398	23398		38.151	18.712	1	1960900			57219	2729	41665	41996	55869	55869					-0.04601872156183617
VDPVYEPDQ	9	Unmodified	_VDPVYEPDQ_					0	0	0		VWC2|p.E258K|4|0.41|ENSG00000188730|chr7:49802786-49802786|G/A|missense_variant;ENSG00000188730|ENST00000340652|VWC2	VWC2|p.E258K|4|0.41|ENSG00000188730|chr7:49802786-49802786|G/A|missense_variant	VWC2|p.E258K|4|0.41|ENSG00000188730|chr7:49802786-49802786|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	531.3594360351562	2	531.242929	1060.47131	-0.75478	-0.00040097	1.4318	0.00076066	0.67706	0.00035968	531.2435762658122	55.284	0.30552	56.035	55.881	56.187	0.75075					8	5	2	0	0	0	0.60917	1	20878	20878		25.399	2.7412	1	1155300			57220	30153	41666	41997	55870	55870					-0.05651136789924749
VDQDLRTYLDK	11	Unmodified	_VDQDLRTYLDK_					0	0	0		ENSG00000135446|ENST00000257904|CDK4;ENST00000551706.1_1_12:58144639-58145133:-|nuORF	ENSG00000135446|ENST00000257904|CDK4	ENSG00000135446|ENST00000257904|CDK4	MULTI-MSMS	A375_MHC_IP_R2	2	456.3048400878906	3	455.905141	1364.69359	-0.56955	-0.00025966	0.057739	2.6323E-05	-0.51181	-0.00023334	456.2395901990797	21.994	0.45897	22.614	22.285	22.744	0.61932					15	8	2	0	0	0	0.7353	1	6987	6987		3.8459	0.25323	1	1899400			57221	4684	41667	41998	55871	55871					0.025835175554675516
VDQLQLLGAAP	11	Unmodified	_VDQLQLLGAAP_					0	0	0			REV__nc|ENSG00000109466|O95198-3|KLHL2	REV__nc|ENSG00000109466|O95198-3|KLHL2	MULTI-MSMS	A375_MHC_IP_R2	2	375.94854736328125	3	375.548518	1123.62372	0.2724	0.0001023	-0.33666	-0.00012643	-0.064265	-2.4135E-05	375.548331959151	77.329	0.45833	78.072	77.807	78.265	0.74293					20	8	3	0	0	0	0.73354	1	29401	29401		5.5233	2.2037	1	2124800	+		57222	17580	41668	41999	55872	55872					0.06685683677528687
VDQLQLLGAAP	11	Unmodified	_VDQLQLLGAAP_					0	0	0			REV__nc|ENSG00000109466|O95198-3|KLHL2	REV__nc|ENSG00000109466|O95198-3|KLHL2	MULTI-MATCH	A375_MHC_IP_R1	1		3	375.548518	1123.62372	0.47064	0.00017675	-0.41244	-0.00015489	0.058196	2.1856E-05	375.5483445985545	78.341	0.4569	78.341	78.099	78.556	0	0.13455	-3.46E-05	NaN	5.5233	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1384400	+		57223	17580	41668	41999							0.06685683677528687
VDQSPLFSY	9	Unmodified	_VDQSPLFSY_					0	0	0			REV__nc|ENSG00000078177|Q86UW6-2|N4BP2	REV__nc|ENSG00000078177|Q86UW6-2|N4BP2	MULTI-MSMS	A375_MHC_IP_R1	1	528.1510009765625	2	528.25584	1054.49713	-0.76642	-0.00040487	2.4024	0.0012691	1.6359	0.00086419	528.7585692245862	39.824	0.75999	39.824	39.391	40.151	0					52	14	5	0	0	0	0.55818	1	13598	13598		16.942	0.79319	1	20965000	+		57224	16706	41669	42000	55873	55873					-0.027942425476112476
VDREDRFRRPR	11	Unmodified	_VDREDRFRRPR_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MSMS	A375_MHC_IP_R1	1	751.8089599609375	2	751.408372	1500.80219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.515	1	95.515	95.015	96.015	0								0	0	0	0.16307	1	35107	35107		2.7352	0	1				57225	2743	41670	42001	55874	55874					0.0718216636910256
VDRISSQVV	9	Unmodified	_VDRISSQVV_					0	0	0		BOD1L2|p.A114T|1|0.37|ENSG00000228075|chr18:57147652-57147652|G/A|missense_variant;BOD1L2|p.P126L|1|0.28|ENSG00000228075|chr18:57147689-57147689|C/T|missense_variant;ENSG00000228075|ENST00000585477|BOD1L2	BOD1L2|p.A114T|1|0.37|ENSG00000228075|chr18:57147652-57147652|G/A|missense_variant	BOD1L2|p.A114T|1|0.37|ENSG00000228075|chr18:57147652-57147652|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	502.1772155761719	2	501.782556	1001.55056	0.20046	0.00010059	-0.86324	-0.00043316	-0.66278	-0.00033257	502.2833108888072	44.978	0.35355	44.978	44.676	45.03	0					9	6	2	0	0	0	0.12771	1	15604	15604		45.7	1.8413	1	743400			57226	244	41671	42002	55875	55875					0.04984554954910436
VDRLPSFLAA	10	Unmodified	_VDRLPSFLAA_					0	0	0		ENSG00000119943|ENST00000370575|PYROXD2;ENST00000483923.5_1_10:100147060-100150703:-|nuORF	ENSG00000119943|ENST00000370575|PYROXD2	ENSG00000119943|ENST00000370575|PYROXD2	MULTI-MSMS	A375_MHC_IP_R2	2	363.941162109375	3	363.541475	1087.60259	-0.17092	-6.2135E-05	-0.37826	-0.00013751	-0.54917	-0.00019965	363.5412571521535	50.761	0.35337	51.515	51.361	51.715	0.75406					10	6	2	0	0	0	0.71354	1	19121	19121		6.2344	0.45093	1	1712800			57227	3638	41672	42003	55876	55876					0.06229718368649628
VDRLPSFLAA	10	Unmodified	_VDRLPSFLAA_					0	0	0		ENSG00000119943|ENST00000370575|PYROXD2;ENST00000483923.5_1_10:100147060-100150703:-|nuORF	ENSG00000119943|ENST00000370575|PYROXD2	ENSG00000119943|ENST00000370575|PYROXD2	MULTI-MATCH	A375_MHC_IP_R1	1		3	363.541475	1087.60259	0.33878	0.00012316	-0.27265	-9.9118E-05	0.066137	2.4044E-05	363.54135034658856	51.55	0.35493	51.55	51.373	51.728	0	0.017417	5.1178E-05	NaN	6.2344	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2167500			57228	3638	41672	42003							0.06229718368649628
VDRLPSFLAA	10	Unmodified	_VDRLPSFLAA_					0	0	0		ENSG00000119943|ENST00000370575|PYROXD2;ENST00000483923.5_1_10:100147060-100150703:-|nuORF	ENSG00000119943|ENST00000370575|PYROXD2	ENSG00000119943|ENST00000370575|PYROXD2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	363.541475	1087.60259	-0.17092	-6.2135E-05	-0.37826	-0.00013751	-0.54917	-0.00019965	363.5412571521535	50.761	0.35337	51.515	51.361	51.715	0.75406	-0.017417	-6.4004E-05	NaN	6.2344	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1712800			57229	3638	41672	42003							0.06229718368649628
VDRVVLRY	8	Unmodified	_VDRVVLRY_					0	0	0			REV__ENST00000479331.1_1_1:3563887-3566563:-|nuORF	REV__ENST00000479331.1_1_1:3563887-3566563:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	510.12701416015625	2	510.303458	1018.59236	-0.60424	-0.00030835	-0.68311	-0.00034859	-1.2873	-0.00065694	510.3031937538016	27.102	0.45283	27.102	26.878	27.331	0					12	8	2	0	0	0	0.972	1	8147	8147		2.3027	0	1	3839500	+		57230	17948	41673	42004	55877	55877					0.08381155434085485
VDRVVLRY	8	Unmodified	_VDRVVLRY_					0	0	0			REV__ENST00000479331.1_1_1:3563887-3566563:-|nuORF	REV__ENST00000479331.1_1_1:3563887-3566563:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	510.12701416015625	2	510.303458	1018.59236	-1.1334	-0.00057836	0.19072	9.7327E-05	-0.94264	-0.00048103	510.30367802310326	26.436	0.30464	27.096	26.957	27.262	0.65992					8	5	2	0	0	0	0.972	1	8955	8955		5.2307	1.9494	1	2476600	+		57231	17948	41673	42004	55878	55878					0.08381155434085485
VDSEAKKLLGL	11	Unmodified	_VDSEAKKLLGL_					0	0	0		nc|ENSG00000132780|P49321-2|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000464190.6_1_1:46049764-46072280:+|nuORF;ENST00000534101.1_1_1:46049764-46072228:+|nuORF;ENST00000529333.5_1_1:46049729-46070604:+|nuORF	nc|ENSG00000132780|P49321-2|NASP	nc|ENSG00000132780|P49321-2|NASP	MULTI-SECPEP	A375_MHC_IP_R1	1	391.9678039550781	3	391.567689	1171.68124	0.01194	4.6752E-06	0.070814	2.7729E-05	0.082754	3.2404E-05	391.56768306092397	65.58	0.76353	65.58	65.309	66.072	0					33	14	3	0	0	0	0.9348	1	23736	23736		23.964	11.737	1	9042600			57232	4447	41674	42005	55879	55879					0.10226525883103932
VDSIATMPT	9	Unmodified	_VDSIATMPT_					0	0	0			REV__MGA|p.V1809Afs*7|1|0.16|ENSG00000174197|chr15:41748847-41748863|TTGTCCAGCTTCTACCT/-|frameshift_variant	REV__MGA|p.V1809Afs*7|1|0.16|ENSG00000174197|chr15:41748847-41748863|TTGTCCAGCTTCTACCT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	467.6623229980469	2	467.731143	933.447733	-0.26938	-0.000126	0.18238	8.5305E-05	-0.086997	-4.0691E-05	467.73126053989677	59.853	0.66201	59.853	59.599	60.261	0					25	12	3	0	0	0	0.55818	1	21652	21652		16.942	3.4344	1	1956500	+		57233	21270	41675	42006	55880	55880					-0.0216527382805225
VDSLLLWNRPR	11	Unmodified	_VDSLLLWNRPR_					0	0	0			REV__ENST00000442018.5_2_X:39911364-39913101:-|nuORF	REV__ENST00000442018.5_2_X:39911364-39913101:-|nuORF	MSMS	A375_MHC_IP_R1	1	684.6030883789062	2	684.890961	1367.76737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130	1	130	129.5	130.5	0								0	0	0	0.16191	1	50011	50011		8.7454	3.8484	1		+		57234	24813	41676	42007	55881	55881					0.09819530508434582
VDSNVGMCDCH	11	Unmodified	_VDSNVGMCDCH_					0	0	0			REV__ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	REV__ASH1L|p.I2935Nfs*8|1|0.31|ENSG00000116539|chr1:155338103-155338104|-/T|frameshift_variant	MSMS	A375_MHC_IP_R1	1	590.1265869140625	2	590.215008	1178.41546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.495	1	69.495	68.995	69.995	0								0	0	0	0.16258	1	25219	25219		5.2969	0.54088	1		+		57235	15463	41677	42008	55882	55882					-0.16660752565030634
VDSSILRTL	9	Unmodified	_VDSSILRTL_					0	0	0			REV__ENST00000540469.5_1_12:132195753-132196293:+|nuORF	REV__ENST00000540469.5_1_12:132195753-132196293:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	502.6922912597656	2	502.292756	1002.57096	-0.65946	-0.00033124	-0.19968	-0.0001003	-0.85914	-0.00043154	502.2926381657064	39.673	0.30611	40.447	40.269	40.575	0.77451					8	5	2	0	0	0	0.39388	1	14701	14701		25.399	0	1	2426300	+		57236	25951	41678	42009	55883	55883					0.06977725614740393
VDSTLKTRI	9	Unmodified	_VDSTLKTRI_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;ENST00000497023.1_1_2:32727936-32730277:+|nuORF	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MSMS	A375_MHC_IP_R1	1	516.738037109375	2	516.806031	1031.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.8	1	142.8	142.3	143.3	0								0	0	0	0.15486	1	54789	54789		4.756	1.4747	1				57237	3337	41679	42010	55884	55884					0.08297414506046152
VDSYSEMLF	9	Unmodified	_VDSYSEMLF_					0	0	0		ENSG00000196689|ENST00000572705|TRPV1;nc|ENSG00000196689|Q8NER1-3|TRPV1;ENST00000574085.5_1_17:3470111-3495610:-|nuORF	ENSG00000196689|ENST00000572705|TRPV1	ENSG00000196689|ENST00000572705|TRPV1	MULTI-MSMS	A375_MHC_IP_R1	1	545.705078125	2	545.741708	1089.46886	-0.71738	-0.0003915	-1.4271	-0.00077884	-2.1445	-0.0011703	546.2420834752457	86.613	0.75916	86.613	86.274	87.034	0					24	8	4	0	0	0	0.57432	1	31704	31704		11.64	0	1	7996000			57238	9076	41680	42011	55885	55885					-0.07229308519231381
VDTAALKQ	8	Unmodified	_VDTAALKQ_					0	0	0		nc|ENSG00000103495|P56270-3|MAZ;ENSG00000103495|ENST00000322945|MAZ;nc|ENSG00000103495|P56270-2|MAZ	nc|ENSG00000103495|P56270-3|MAZ	nc|ENSG00000103495|P56270-3|MAZ	MULTI-MSMS	A375_MHC_IP_R2	2	423.640380859375	2	423.239993	844.465432	0.050714	2.1464E-05	-0.29959	-0.0001268	-0.24888	-0.00010533	423.23949652381714	142.32	0.30562	142.36	142.28	142.58	0.030731					7	5	2	0	0	0	0.77717	1	55664	55664		5.2307	0	1	3900600			57239	2456	41681	42012	55886	55886					0.03697809489085557
VDTFGFRSLAH	11	Unmodified	_VDTFGFRSLAH_					0	0	0		ENST00000542977.5_2_11:71746988-71752151:-|nuORF	ENST00000542977.5_2_11:71746988-71752151:-|nuORF	ENST00000542977.5_2_11:71746988-71752151:-|nuORF	MSMS	A375_MHC_IP_R1	1	625.3654174804688	2	625.319837	1248.62512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.54	1	118.54	118.04	119.04	0								0	0	0	0.15377	1	43688	43688		18.146	4.5315	1				57240	13307	41682	42013	55887	55887					0.01075317766299122
VDTIKESDIIY	11	Unmodified	_VDTIKESDIIY_					0	0	0		ENSG00000164190|ENST00000282516|NIPBL	ENSG00000164190|ENST00000282516|NIPBL	ENSG00000164190|ENST00000282516|NIPBL	MULTI-MSMS	A375_MHC_IP_R1	1	648.740234375	2	648.340101	1294.66565	-0.32513	-0.00021079	0.39423	0.00025559	0.0691	4.48E-05	648.3403037909509	74.535	1.065	74.535	73.843	74.908	0					49	20	3	0	0	0	0.73078	1	27223	27223		8.1555	1.9497	1	5797300			57241	6800	41683	42014	55888	55888					0.03010194575404057
VDTLHRIL	8	Unmodified	_VDTLHRIL_					0	0	0		ENST00000530397.1_1_1:95293042-95354234:+|nuORF;nc|ENSG00000143036|Q8N4M1-5|SLC44A3;nc|ENSG00000143036|Q8N4M1-4|SLC44A3;nc|ENSG00000143036|Q8N4M1-2|SLC44A3;nc|ENSG00000143036|Q8N4M1-3|SLC44A3;nc|ENSG00000143036|Q8N4M1-6|SLC44A3;ENSG00000143036|ENST00000271227|SLC44A3	ENST00000530397.1_1_1:95293042-95354234:+|nuORF	ENST00000530397.1_1_1:95293042-95354234:+|nuORF	MSMS	A375_MHC_IP_R2	2	483.6866455078125	2	483.790184	965.565815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.627	1	61.372	60.872	61.872	0.74503								0	0	0	0.16876	1	22959	22959		18.135	0	1				57242	5342	41684	42015	55889	55889					0.08165466542754984
VDTQVENI	8	Unmodified	_VDTQVENI_					0	0	0			REV__nc|ENSG00000151239|Q12792-4|TWF1	REV__nc|ENSG00000151239|Q12792-4|TWF1	MULTI-SECPEP	A375_MHC_IP_R2	2	459.1187438964844	2	459.232364	916.450176	-0.81734	-0.00037535	1.2602	0.00057871	0.44282	0.00020336	459.2329516244854	52.507	0.65741	53.259	52.932	53.59	0.75225					18	12	2	0	0	0	0.93661	1	19701	19701		15.847	0	1	1660400	+		57243	19746	41685	42016	55890	55890					-0.011391020987502998
VDTSRKSTECV	11	Unmodified	_VDTSRKSTECV_					0	0	0		ENST00000423963.1_1_1:235095587-235095644:+|nuORF	ENST00000423963.1_1_1:235095587-235095644:+|nuORF	ENST00000423963.1_1_1:235095587-235095644:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	613.2426147460938	2	612.798077	1223.5816	-0.45148	-0.00027666	-0.037753	-2.3135E-05	-0.48923	-0.0002998	612.7983278301191	83.881	0.30456	83.881	83.786	84.091	0					8	5	2	0	0	0	0.7039	1	30738	30738		15.248	1.6336	1	1135000			57244	11764	41686	42017	55891	55891					-0.02124659793162209
VDTSRKSTECV	11	Unmodified	_VDTSRKSTECV_					0	0	0		ENST00000423963.1_1_1:235095587-235095644:+|nuORF	ENST00000423963.1_1_1:235095587-235095644:+|nuORF	ENST00000423963.1_1_1:235095587-235095644:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	612.798077	1223.5816	-0.52692	-0.00032289	-0.076649	-4.697E-05	-0.60357	-0.00036986	612.7982473537884	83.105	0.55486	83.845	83.494	84.049	0.73962	-0.017901	-2.5453E-05	NaN	15.248	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1163800			57245	11764	41686	42017							-0.02124659793162209
VDTTFIAHMC	10	Unmodified	_VDTTFIAHMC_					0	0	0			REV__ENST00000602187.1_1_19:52668540-52668621:-|nuORF	REV__ENST00000602187.1_1_19:52668540-52668621:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1138.0308837890625	1	1137.50673	1136.49945	0.049377	5.6167E-05	-1.5153	-0.0017237	-1.4659	-0.0016675	1137.5038799034585	25.046	0.50509	25.046	24.852	25.357	0					13	9	2	0	0	0	0.85226	1	7238	7238		20.454	5.6154	1	3023500	+		57246	26510	41687	42018	55892	55892					-0.06333853405794798
VDTTFIAHMC	10	Unmodified	_VDTTFIAHMC_					0	0	0			REV__ENST00000602187.1_1_19:52668540-52668621:-|nuORF	REV__ENST00000602187.1_1_19:52668540-52668621:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	1137.50673	1136.49945	-0.20744	-0.00023597	-0.76399	-0.00086905	-0.97143	-0.001105	1137.5055892291184	24.559	0.40489	25.203	25.009	25.414	0.64368	0.078212	0.00026332	NaN	20.454	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2903000	+		57247	26510	41687	42018							-0.06333853405794798
VDTYPNTQDY	10	Unmodified	_VDTYPNTQDY_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	A375_MHC_IP_R1	1	608.6617431640625	2	608.26185	1214.50915	-0.22533	-0.00013706	-0.27429	-0.00016684	-0.49962	-0.0003039	608.2616575433545	28.577	0.30454	28.577	28.44	28.745	0					9	5	2	0	0	0	0.57505	1	8868	8868		22.736	9.6938	1	2150400	+		57248	20249	41688	42019	55893	55893					-0.08952670595067502
VDTYPNTQDY	10	Unmodified	_VDTYPNTQDY_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MULTI-SECPEP	A375_MHC_IP_R2	2	608.7008666992188	2	608.26185	1214.50915	-0.99155	-0.00060312	-0.50357	-0.0003063	-1.4951	-0.00090943	608.2617263530783	53.022	0.71291	53.773	53.588	54.301	0.75105					18	13	2	0	0	0	0.91909	1	20111	20111		13.906	9.15	1	1243300	+		57249	20249	41688	42019	55894	55894					-0.08952670595067502
VDVTGSSLGI	10	Unmodified	_VDVTGSSLGI_					0	0	0			REV__nc|ENSG00000134987|Q8NI36|WDR36	REV__nc|ENSG00000134987|Q8NI36|WDR36	MULTI-MSMS	A375_MHC_IP_R1	1	947.5313720703125	1	947.504403	946.497126	-0.033934	-3.2153E-05	0.067921	6.4355E-05	0.033987	3.2202E-05	947.5036446592284	28.295	0.45354	28.295	28.088	28.541	0					11	8	2	0	0	0	0.71564	1	8800	8800		5.2969	0	1	1748800	+		57250	18816	41689	42020	55895	55895					0.021737574523854164
VDVTGSSLGI	10	Unmodified	_VDVTGSSLGI_					0	0	0			REV__nc|ENSG00000134987|Q8NI36|WDR36	REV__nc|ENSG00000134987|Q8NI36|WDR36	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	947.504403	946.497126	-0.033934	-3.2153E-05	0.067921	6.4355E-05	0.033987	3.2202E-05	947.5036446592284	28.295	0.45354	28.295	28.088	28.541	0	0.0093335	0.00071917	NaN	5.2969	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1748800	+		57251	18816	41689	42020							0.021737574523854164
VDVTGSSLGI	10	Unmodified	_VDVTGSSLGI_					0	0	0			REV__nc|ENSG00000134987|Q8NI36|WDR36	REV__nc|ENSG00000134987|Q8NI36|WDR36	MULTI-MATCH	A375_MHC_IP_R2	2		1	947.504403	946.497126	-0.14397	-0.00013641	-0.80816	-0.00076573	-0.95213	-0.00090214	947.5039155041891	27.598	0.20201	28.276	28.149	28.351	0.67857	-0.0093335	-0.00011092	NaN	5.2969	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1412900	+		57252	18816	41689	42020							0.021737574523854164
VDYNRLGY	8	Unmodified	_VDYNRLGY_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	A375_MHC_IP_R2	2	500.23388671875	2	500.248349	998.482145	-0.67871	-0.00033952	3.3906	0.0016961	2.7118	0.0013566	500.2484723345407	45.041	0.35709	45.81	45.594	45.951	0.7691					13	6	3	0	0	0	0.7256	1	16829	16829		26.884	6.43	1	960750			57253	9818	41690	42021	55896	55896					-0.017156896249616693
VEAALDSRKNY	11	Unmodified	_VEAALDSRKNY_					0	0	0		ENSG00000125901|ENST00000380325|MRPS26	ENSG00000125901|ENST00000380325|MRPS26	ENSG00000125901|ENST00000380325|MRPS26	MULTI-SECPEP	A375_MHC_IP_R1	1	422.12744140625	3	422.554331	1264.64116	-0.25009	-0.00010568	-0.96999	-0.00040987	-1.2201	-0.00051555	422.5534888777249	24.091	0.20259	24.091	23.94	24.143	0					5	3	2	0	0	0	0.95659	1	6759	6759		18.853	3.3144	1	596790			57254	4006	41691	42022	55897	55897					0.01942979212526552
VEAALDSRKNY	11	Unmodified	_VEAALDSRKNY_					0	0	0		ENSG00000125901|ENST00000380325|MRPS26	ENSG00000125901|ENST00000380325|MRPS26	ENSG00000125901|ENST00000380325|MRPS26	MULTI-SECPEP	A375_MHC_IP_R2	2	422.6305847167969	3	422.554331	1264.64116	-0.47333	-0.00020001	0.19165	8.0983E-05	-0.28168	-0.00011903	422.55426411819303	23.023	0.3578	23.653	23.47	23.828	0.63014					13	6	3	0	0	0	0.76886	1	7343	7343		33.632	22.001	1	1737100			57255	4006	41691	42022	55898	55898					0.01942979212526552
VEAALRIH	8	Unmodified	_VEAALRIH_					0	0	0			REV__nc|ENSG00000170927|P08F94-2|PKHD1	REV__nc|ENSG00000170927|P08F94-2|PKHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	908.2080688476562	1	908.531227	907.52395	-0.24513	-0.00022271	-0.31817	-0.00028906	-0.5633	-0.00051178	908.5315829302947	119.49	0.9629	119.49	118.98	119.95	0					31	18	2	0	0	0	0.972	1	44130	44130		0.69038	0	1	85327000	+		57256	21034	41692	42023	55899	55899					0.06648910854210044
VEAASMSDKMY	11	Unmodified	_VEAASMSDKMY_					0	0	0			REV__nc|ENSG00000082397|Q9Y2J2-3|EPB41L3	REV__nc|ENSG00000082397|Q9Y2J2-3|EPB41L3	MSMS	A375_MHC_IP_R1	1	616.171142578125	2	616.270306	1230.52606	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.61	1	101.61	101.11	102.11	0								0	0	0	0.16191	1	37344	37344		8.7454	2.0222	1		+		57257	27124	41693	42024	55900	55900					-0.07998209305128512
VEACCMHCS	9	Unmodified	_VEACCMHCS_					0	0	0		ENST00000507668.6_1_5:79438544-79438895:-|nuORF	ENST00000507668.6_1_5:79438544-79438895:-|nuORF	ENST00000507668.6_1_5:79438544-79438895:-|nuORF	MSMS	A375_MHC_IP_R1	1	491.6713562011719	2	491.666108	981.317664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.232	1	64.232	63.732	64.732	0								0	0	0	0.15486	1	23235	23235		4.756	0	1				57258	12867	41694	42025	55901	55901					-0.17374232694726288
VEADRPGKLF	10	Unmodified	_VEADRPGKLF_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENSG00000170748|ENST00000306904|RBMXL2;ENST00000565907.1_1_X:135961433-135961586:-|nuORF;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-3|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	A375_MHC_IP_R1	1	378.2768249511719	3	377.876746	1130.60841	0.29631	0.00011197	0.17785	6.7204E-05	0.47416	0.00017917	377.8766836843554	40.214	0.61139	40.214	39.948	40.559	0					21	11	3	0	0	0	0.50967	1	13815	13815		23.801	3.2201	1	4075500			57259	5675	41695	42026	55902	55902					0.04832816880320934
VEAEDTRFY	9	Unmodified	_VEAEDTRFY_					0	0	0			REV__ENST00000588450.1_1_19:2235759-2236247:-|nuORF	REV__ENST00000588450.1_1_19:2235759-2236247:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	564.7314453125	2	565.261653	1128.50875	-0.40155	-0.00022698	-0.72106	-0.00040759	-1.1226	-0.00063457	565.2611351456897	78.58	0.50731	79.324	79.033	79.54	0.74474					12	9	2	0	0	0	0.77834	1	29747	29747		8.5933	5.7041	1	993750	+		57260	26415	41696	42027	55903	55903					-0.05036045524275323
VEAEKVIKP	9	Unmodified	_VEAEKVIKP_					0	0	0			REV__nc|ENSG00000003249|Q9H9R9-3|DBNDD1	REV__nc|ENSG00000003249|Q9H9R9-3|DBNDD1	MULTI-SECPEP	A375_MHC_IP_R2	2	507.1184387207031	2	506.8055	1011.59645	-1.118	-0.00056659	1.1609	0.00058836	0.042956	2.177E-05	506.8057791591327	57.215	0.409	57.964	57.712	58.121	0.74965					11	7	2	0	0	0	0.65246	1	21634	21634		6.7232	0	1	1486400	+		57261	27086	41697	42028	55904	55904					0.09111200137135711
VEAELRSRLA	10	Unmodified	_VEAELRSRLA_					0	0	0		nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-4|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;ENSG00000162869|ENST00000294952|PPP1R21	nc|ENSG00000162869|Q6ZMI0-3|PPP1R21	nc|ENSG00000162869|Q6ZMI0-3|PPP1R21	MULTI-SECPEP	A375_MHC_IP_R2	2	382.2873840332031	3	381.887533	1142.64077	-0.26318	-0.0001005	0.047144	1.8004E-05	-0.21604	-8.2501E-05	381.8875172725324	34.687	0.85915	35.45	35.171	36.03	0.76338					38	16	4	0	0	0	0.37302	1	12499	12499		41.347	0	1	34197000			57262	14716	41698	42029	55905	55905					0.07515604283344146
VEAEQTRAI	9	Unmodified	_VEAEQTRAI_					0	0	0			REV__AluSx1_dup103332|chr19:3541347-3541618:-|1.5455059550052153|0.4666171557700829|1.73|472.0|8|2|sense	REV__AluSx1_dup103332|chr19:3541347-3541618:-|1.5455059550052153|0.4666171557700829|1.73|472.0|8|2|sense	MULTI-SECPEP	A375_MHC_IP_R1	1	509.1834411621094	2	508.772188	1015.52982	-0.3243	-0.00016499	0.072006	3.6635E-05	-0.25229	-0.00012836	508.772131709635	53.687	0.55973	53.687	53.403	53.962	0					29	10	4	0	0	0	0.63622	1	19235	19235		14.405	7.6822	1	4251200	+		57263	15378	41699	42030	55906	55906					0.022679645752418764
VEAERPEL	8	Unmodified	_VEAERPEL_					0	0	0			REV__AluSp_dup17164|chr6:42889159-42889460:+|1.12422977904819|0.1877517114460719|2.58|472.0|11|3|sense	REV__AluSp_dup17164|chr6:42889159-42889460:+|1.12422977904819|0.1877517114460719|2.58|472.0|11|3|sense	MULTI-MSMS	A375_MHC_IP_R1	1	472.64788818359375	2	471.748182	941.481811	-0.46518	-0.00021945	-0.84221	-0.00039731	-1.3074	-0.00061676	471.7479881653405	95.75	0.95994	95.75	95.109	96.069	0					42	18	3	0	0	0	0.75322	1	35069	35069		19.439	1.304	1	5795700	+		57264	15373	41700	42031	55907	55907					0.008728906551823457
VEAESEQKW	9	Unmodified	_VEAESEQKW_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	A375_MHC_IP_R1	1	553.6613159179688	2	553.261653	1104.50875	-0.69032	-0.00038193	-1.2639	-0.00069927	-1.9542	-0.0010812	553.2616296014018	28.138	0.50337	28.138	27.937	28.44	0					24	9	3	0	0	0	0.0020207	1	8638	8638		155.95	117.34	1	9291500			57265	8584	41701	42032	55908	55908					-0.03932045524265959
VEAESEQKW	9	Unmodified	_VEAESEQKW_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	A375_MHC_IP_R2	2	553.6611328125	2	553.261653	1104.50875	-0.73193	-0.00040495	-1.0267	-0.00056802	-1.7586	-0.00097297	553.2616000015264	27.547	0.45553	28.225	28.047	28.502	0.67857					18	8	3	0	0	0	0.0020209	1	9429	9429		143.91	107.78	1	10454000			57266	8584	41701	42032	55909	55909					-0.03932045524265959
VEAESEQKW	9	Unmodified	_VEAESEQKW_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	A375_MHC_IP_R2	2	553.2293090820312	2	553.261653	1104.50875	-1.1518	-0.00063724	1.7329	0.00095875	0.58113	0.00032152	553.2616043244475	58.875	1.0133	59.622	59.286	60.299	0.74714					33	19	3	0	0	0	0.63811	1	22190	22190		12.532	2.3482	1	3440500			57267	8584	41701	42032	55910	55910					-0.03932045524265959
VEAGNPQAR	9	Unmodified	_VEAGNPQAR_					0	0	0		ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MSMS	A375_MHC_IP_R2	2	471.2942199707031	2	471.243598	940.472643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.951	1	81.696	81.196	82.196	0.74474								0	0	0	0.15486	1	30740	30740		7.2892	0	1				57268	9248	41702	42033	55911	55911					2.5420895212846517E-05
VEALQLPN	8	Unmodified	_VEALQLPN_					0	0	0		ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2;nc|ENSG00000006744|Q9BQ52-3|ELAC2;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	442.64654541015625	2	442.247818	882.481082	-0.69106	-0.00030562	-3.2731	-0.0014475	-3.9642	-0.0017532	442.24635018861295	22.088	0.50999	22.707	22.387	22.897	0.61932					11	9	2	0	0	0	0.77717	1	7031	7031		5.2307	0	1	1246500			57269	929	41703	42034	55912	55912					0.03514096006119871
VEAPGRLW	8	Unmodified	_VEAPGRLW_					0	0	0		ENSG00000039650|ENST00000322344|PNKP	ENSG00000039650|ENST00000322344|PNKP	ENSG00000039650|ENST00000322344|PNKP	MULTI-SECPEP	A375_MHC_IP_R1	1	464.6557312011719	2	464.255977	926.497401	-0.19805	-9.1946E-05	-0.28766	-0.00013355	-0.48571	-0.00022549	464.2557648760418	63.586	0.5617	63.586	63.326	63.887	0					21	10	3	0	0	0	0.93661	1	22960	22960		10.824	0	1	3170800			57270	1161	41704	42035	55913	55913					0.031212219628855564
VEAPGRLW	8	Unmodified	_VEAPGRLW_					0	0	0		ENSG00000039650|ENST00000322344|PNKP	ENSG00000039650|ENST00000322344|PNKP	ENSG00000039650|ENST00000322344|PNKP	MULTI-SECPEP	A375_MHC_IP_R2	2	464.3170166015625	2	464.255977	926.497401	-0.63797	-0.00029618	0.087475	4.0611E-05	-0.5505	-0.00025557	464.25591810238853	62.662	0.55473	63.405	63.13	63.685	0.74263					26	10	3	0	0	0	0.93661	1	23688	23688		15.847	15.847	1	4454200			57271	1161	41704	42035	55914	55914					0.031212219628855564
VEAPSALSV	9	Unmodified	_VEAPSALSV_					0	0	0			REV__nc|ENSG00000141448|Q92908-2|GATA6	REV__nc|ENSG00000141448|Q92908-2|GATA6	MULTI-MSMS	A375_MHC_IP_R1	1	872.8728637695312	1	872.472374	871.465098	-0.47294	-0.00041263	-0.14187	-0.00012378	-0.61481	-0.0005364	872.4721843680699	84.33	0.70824	84.33	83.989	84.697	0					34	13	3	0	0	0	0.047602	1	30818	30818		65.235	0	1	27713000	+		57272	19267	41705	42036	55915	55915					0.024223897692309038
VEAQDTDH	8	Unmodified	_VEAQDTDH_					0	0	0		nc|ENSG00000166589|O75309-4|CDH16	nc|ENSG00000166589|O75309-4|CDH16	nc|ENSG00000166589|O75309-4|CDH16	MULTI-SECPEP	A375_MHC_IP_R1	1	914.5568237304688	1	914.385016	913.377739	0.39891	0.00036476	-0.41209	-0.00037681	-0.013176	-1.2048E-05	914.3833433220603	114.19	0.15434	114.19	114.06	114.21	0					4	2	2	0	0	0	0.972	1	41830	41830		2.3027	0	1	1785500			57273	14743	41706	42037	55916	55916					-0.08241436172340855
VEARNGVSGLV	11	Unmodified	_VEARNGVSGLV_					0	0	0		ENSG00000142627|ENST00000358432|EPHA2;nc|ENSG00000142627|P29317-2|EPHA2	ENSG00000142627|ENST00000358432|EPHA2	ENSG00000142627|ENST00000358432|EPHA2	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6166381835938	2	550.806562	1099.59857	-0.70427	-0.00038792	-1.2102	-0.00066659	-1.9145	-0.0010545	550.8080695762136	48.22	0.1515	48.978	48.879	49.03	0.75737					4	2	2	0	0	0	0.92455	1	18089	18089		11.495	6.1978	1	712330			57274	5319	41707	42038	55917	55917					0.052756288749378655
VEARPMIHEL	10	Unmodified	_VEARPMIHEL_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MSMS	A375_MHC_IP_R1	1	399.1136169433594	3	398.881502	1193.62268	0.26097	0.0001041	1.5911	0.00063466	1.8521	0.00073876	399.2156091180269	48.769	0.35438	48.769	48.629	48.983	0					9	6	2	0	0	0	0.6806	1	17240	17240		12.873	0	1	1924000			57275	2800	41708	42039	55918	55918					0.03361146036968421
VEARRQAVLSW	11	Unmodified	_VEARRQAVLSW_					0	0	0			REV__ENST00000336854.8_1_12:52464018-52464234:+|nuORF	REV__ENST00000336854.8_1_12:52464018-52464234:+|nuORF	MSMS	A375_MHC_IP_R1	1	657.8839111328125	2	657.867486	1313.72042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.54	1	96.54	96.04	97.04	0								0	0	0	0.16191	1	35478	35478		8.7454	0	1		+		57276	23684	41709	42040	55919	55919					0.07610670957319599
VEASYCEESFT	11	Unmodified	_VEASYCEESFT_					0	0	0			REV__ENSG00000266714|ENST00000645453|MYO15B	REV__ENSG00000266714|ENST00000645453|MYO15B	MULTI-SECPEP	A375_MHC_IP_R1	1	633.4945678710938	2	632.755543	1263.49653	-0.55383	-0.00035044	-0.24325	-0.00015392	-0.79708	-0.00050435	632.7536435776458	97.212	0.15128	97.212	97.137	97.288	0					4	2	2	0	0	0	0.99676	1	35712	35712		5.7319	4.5385	1	555640	+		57277	22927	41710	42041	55920	55920					-0.12467450049643958
VEATDQHFI	9	Unmodified	_VEATDQHFI_					0	0	0		ENSG00000144481|ENST00000324695|TRPM8;nc|ENSG00000144481|Q7Z2W7-4|TRPM8;ENST00000444298.5_1_2:234856214-234923253:+|nuORF	ENSG00000144481|ENST00000324695|TRPM8	ENSG00000144481|ENST00000324695|TRPM8	MULTI-SECPEP	A375_MHC_IP_R2	2	530.65869140625	2	530.258914	1058.50327	-0.57549	-0.00030516	-0.33263	-0.00017638	-0.90812	-0.00048154	530.2587021658603	108.59	0.6112	109.34	109.01	109.62	0.74683					26	11	3	0	0	0	0.67483	1	40956	40956		14.838	4.7643	1	4098100			57278	5488	41711	42042	55921	55921					-0.023637243160919752
VEATTSSC	8	Unmodified	_VEATTSSC_					0	0	0			REV__nc|ENSG00000168014|Q4AC94-4|C2CD3	REV__nc|ENSG00000168014|Q4AC94-4|C2CD3	MSMS	A375_MHC_IP_R2	2	399.13031005859375	2	399.170918	796.327284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.376	1	66.114	65.614	66.614	0.73811								0	0	0	0.16876	1	24786	24786		12.532	3.1841	1		+		57279	27343	41712	42043	55922	55922					-0.07902681821690294
VEAVSFQHF	9	Unmodified	_VEAVSFQHF_					0	0	0		ENSG00000116918|ENST00000366639|TSNAX	ENSG00000116918|ENST00000366639|TSNAX	ENSG00000116918|ENST00000366639|TSNAX	MULTI-MSMS	A375_MHC_IP_R1	1	532.6640625	2	532.263999	1062.51345	-0.82855	-0.00044101	1.068	0.00056847	0.23948	0.00012747	532.2643087425988	66.549	0.50986	66.549	66.224	66.734	0					22	9	3	0	0	0	0.06083	2	24071	24071;24150		60.074	30.992	1	4010900			57280	3444	41713	42044	55923;55924	55923					-0.015311165908542534
VEAVSFQHF	9	Unmodified	_VEAVSFQHF_					0	0	0		ENSG00000116918|ENST00000366639|TSNAX	ENSG00000116918|ENST00000366639|TSNAX	ENSG00000116918|ENST00000366639|TSNAX	MULTI-MSMS	A375_MHC_IP_R2	2	532.6635131835938	2	532.263999	1062.51345	-0.87581	-0.00046616	0.15856	8.4398E-05	-0.71725	-0.00038176	532.2640862035674	65.676	0.66141	66.414	66.069	66.731	0.73812					18	11	2	0	0	0	0.094655	1	24935	24935		51.63	27.609	1	4291700			57281	3444	41713	42044	55925	55925					-0.015311165908542534
VEAVTPEAV	9	Unmodified	_VEAVTPEAV_					0	0	0		MAN1A2|p.V519_A520insTPE|1|0.13|ENSG00000198162|chr1:117499433-117499434|-/TACTCCAGA|inframe_insertion	MAN1A2|p.V519_A520insTPE|1|0.13|ENSG00000198162|chr1:117499433-117499434|-/TACTCCAGA|inframe_insertion	MAN1A2|p.V519_A520insTPE|1|0.13|ENSG00000198162|chr1:117499433-117499434|-/TACTCCAGA|inframe_insertion	MULTI-MSMS	A375_MHC_IP_R1	1	457.6527404785156	2	457.745108	913.475663	-0.25534	-0.00011688	-0.0025363	-1.161E-06	-0.25788	-0.00011804	457.74498928549167	99.515	0.55653	99.515	99.218	99.774	0					16	10	2	0	0	0	0.077132	1	36582	36582		54.774	2.5052	1	1728400			57282	14343	41714	42045	55926	55926					0.015463724236724374
VEAYRRVVRD	10	Unmodified	_VEAYRRVVRD_					0	0	0			REV__ENSG00000147113|ENST00000398000|DIPK2B	REV__ENSG00000147113|ENST00000398000|DIPK2B	MULTI-SECPEP	A375_MHC_IP_R1	1	422.12744140625	3	421.570316	1261.68912	-0.18028	-7.6001E-05	0.11086	4.6736E-05	-0.06942	-2.9265E-05	421.57032092944064	24.22	0.35548	24.22	24.092	24.447	0					10	6	2	0	0	0	0.94163	1	6759	6759		3.5871	3.5871	1	6544000	+		57283	19567	41715	42046	55927	55927					0.06874097923218869
VECCKIKKMY	10	Unmodified	_VECCKIKKMY_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-SECPEP	A375_MHC_IP_R2	2	623.2581176757812	2	622.81363	1243.61271	-0.87656	-0.00054594	2.11	0.0013142	1.2335	0.00076822	623.3171309136262	96.838	0.91048	97.594	96.962	97.873	0.75587					28	17	2	0	0	0	0.78945	1	36560	36560		19.257	0	1	1948500			57284	1236	41716	42047	55928	55928					0.000644987157329524
VECDMECHS	9	Unmodified	_VECDMECHS_					0	0	0			REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2	REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2	MULTI-MSMS	A375_MHC_IP_R1	1	527.0789184570312	2	526.677727	1051.3409	-0.58945	-0.00031045	1.166	0.00061408	0.57651	0.00030363	526.6788856032971	36.976	0.60598	36.976	36.695	37.301	0					24	10	3	0	0	0	0.63811	3	12417	12369;12417;12433		12.532	0.89125	1	6296300	+		57285	16158	41717	42048	55929;55930;55931	55930					-0.18271515376409297
VECDMECHS	9	Unmodified	_VECDMECHS_					0	0	0			REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2	REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2	MULTI-MSMS	A375_MHC_IP_R2	2	527.0784301757812	2	526.677727	1051.3409	-0.65892	-0.00034704	0.67291	0.00035441	0.013992	7.3692E-06	526.678561348656	36.351	0.66218	37.122	36.799	37.461	0.7709					30	11	3	0	0	0	0.63811	1	13208	13208		12.532	1.7076	1	9503100	+		57286	16158	41717	42048	55932	55932					-0.18271515376409297
VECDPQCEKME	11	Unmodified	_VECDPQCEKME_					0	0	0		ENST00000484594.5_1_2:212426591-213403254:-|nuORF;nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4	ENST00000484594.5_1_2:212426591-213403254:-|nuORF	ENST00000484594.5_1_2:212426591-213403254:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	436.9315185546875	3	437.506896	1309.49886	-0.34176	-0.00014952	0.69087	0.00030226	0.34911	0.00015274	437.8415549075549	32.543	0.45745	33.28	33.061	33.518	0.73692					13	8	2	0	0	0	1.0004	1	11661	11661		0.40827	0	1	1416200			57287	8166	41718	42049	55933	55933					-0.14351060907847568
VECERENAQ	9	Unmodified	_VECERENAQ_					0	0	0			REV__nc|ENSG00000153046|Q9Y232-3|CDYL	REV__nc|ENSG00000153046|Q9Y232-3|CDYL	MSMS	A375_MHC_IP_R2	2	539.1715698242188	2	539.235113	1076.45567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.577	1	56.328	55.828	56.828	0.75075								0	0	0	0.1535	1	20997	20997		15.847	5.0233	1		+		57288	18511	41719	42050	55934	55934					-0.0794974657860621
VECHEWLCL	9	Unmodified	_VECHEWLCL_					0	0	0			REV__ENST00000529354.1_1_11:118992311-119001682:+|nuORF	REV__ENST00000529354.1_1_11:118992311-119001682:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	566.0443115234375	2	566.25172	1130.48889	-0.40202	-0.00022764	2.5053	0.0014186	2.1032	0.001191	566.7534715847511	83.032	0.15311	83.771	83.694	83.848	0.73962					4	2	2	0	0	0	0.71541	1	31541	31541		11.64	3.047	1	628520	+		57289	25819	41720	42051	55935	55935					-0.07113836060261747
VECKAIESI	9	Unmodified	_VECKAIESI_					0	0	0			REV__nc|ENSG00000134146|Q7L8W6-2|DPH6	REV__nc|ENSG00000134146|Q7L8W6-2|DPH6	MULTI-SECPEP	A375_MHC_IP_R1	1	991.4674682617188	1	991.512859	990.505582	-0.052719	-5.2272E-05	-0.48321	-0.00047911	-0.53593	-0.00053138	991.5122761891423	133.13	0.30621	133.13	133	133.3	0					9	5	2	0	0	0	0.61452	1	51392	51392		20.415	2.2682	1	2969300	+		57290	27231	41721	42052	55936	55936					0.00994988097352234
VECKAIESI	9	Unmodified	_VECKAIESI_					0	0	0			REV__nc|ENSG00000134146|Q7L8W6-2|DPH6	REV__nc|ENSG00000134146|Q7L8W6-2|DPH6	MULTI-MATCH	A375_MHC_IP_R2	2		1	991.512859	990.505582	0.066217	6.5655E-05	-0.16886	-0.00016742	-0.10264	-0.00010177	991.5129846636695	132.96	0.30408	133.12	132.99	133.3	0.16487	-0.0025327	0.00019046	NaN	20.415	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3157900	+		57291	27231	41721	42052							0.00994988097352234
VECLNYQHY	9	Unmodified	_VECLNYQHY_					0	0	0		nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978|HNRNPK	nc|ENSG00000165119|P61978|HNRNPK	MULTI-SECPEP	A375_MHC_IP_R1	1	585.1574096679688	2	584.758223	1167.50189	-0.22194	-0.00012978	-0.24517	-0.00014336	-0.4671	-0.00027314	584.7579573646854	47.442	0.81505	47.442	47.055	47.87	0					24	15	2	0	0	0	0.11436	1	16685	16685		68.081	47.627	1	2708200			57292	6916	41722	42053	55937	55937					-0.07515681676500208
VECLNYQHY	9	Unmodified	_VECLNYQHY_					0	0	0		nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978|HNRNPK	nc|ENSG00000165119|P61978|HNRNPK	MULTI-MSMS	A375_MHC_IP_R2	2	584.6990356445312	2	584.758223	1167.50189	-0.29089	-0.0001701	-0.069947	-4.0902E-05	-0.36083	-0.000211	584.7581717632638	46.796	0.81576	47.557	47.155	47.97	0.76127					27	15	2	0	0	0	0.32092	1	17677	17677		29.082	16.55	1	3544000			57293	6916	41722	42053	55938	55938					-0.07515681676500208
VECMTCNEESY	11	Unmodified	_VECMTCNEESY_					0	0	0		HGF|p.G216E|1|0.17|ENSG00000019991|chr7:81745099-81745099|C/T|missense_variant	HGF|p.G216E|1|0.17|ENSG00000019991|chr7:81745099-81745099|C/T|missense_variant	HGF|p.G216E|1|0.17|ENSG00000019991|chr7:81745099-81745099|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	654.6336059570312	2	654.233064	1306.45157	0.038305	2.506E-05	0.10769	7.0452E-05	0.14599	9.5512E-05	654.2333669145999	114.72	0.70783	114.72	114.41	115.12	0					29	13	3	0	0	0	0.73378	1	42083	42083		5.2969	2.3016	1	4278600			57294	14122	41723	42054	55939	55939					-0.1893934017882657
VECPDGEYSN	10	Unmodified	_VECPDGEYSN_					0	0	0		CASR|p.D575N|1|0.39|ENSG00000036828|chr3:122282227-122282227|G/A|missense_variant	CASR|p.D575N|1|0.39|ENSG00000036828|chr3:122282227-122282227|G/A|missense_variant	CASR|p.D575N|1|0.39|ENSG00000036828|chr3:122282227-122282227|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	557.1141357421875	2	556.713679	1111.4128	-0.51898	-0.00028892	0.044252	2.4636E-05	-0.47473	-0.00026429	556.7136992197968	52.275	3.3483	52.275	51.168	54.516	0					126	65	3	0	0	0	0.70651	2	18402	18402;18522		9.3831	3.029	1	3620800			57295	295	41724	42055	55940;55941	55940					-0.13844561426685686
VECRACDC	8	Unmodified	_VECRACDC_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MSMS	A375_MHC_IP_R1	1	449.6630554199219	2	449.664423	897.314293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.091	1	20.091	19.591	20.591	0								0	0	0	0.16876	1	5103	5103		0.79363	0	1				57296	1971	41725	42056	55942	55942					-0.1384715947708628
VECSCHHLF	9	Unmodified	_VECSCHHLF_					0	0	0			REV__ENSG00000173715|ENST00000540737|C11orf80	REV__ENSG00000173715|ENST00000540737|C11orf80	MULTI-SECPEP	A375_MHC_IP_R2	2	538.18408203125	2	537.728412	1073.44227	-0.88846	-0.00047775	0.64909	0.00034903	-0.23937	-0.00012872	537.7286665829624	107.9	0.61401	108.65	108.35	108.97	0.75436					18	11	2	0	0	0	0.75466	1	40858	40858		7.9102	3.5809	1	2416900	+		57297	21245	41726	42057	55943	55943					-0.09151275891554178
VECVITMMQNP	11	Unmodified	_VECVITMMQNP_					0	0	0		ENST00000495909.2_1_5:90650295-90650631:+|nuORF	ENST00000495909.2_1_5:90650295-90650631:+|nuORF	ENST00000495909.2_1_5:90650295-90650631:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	632.46923828125	2	632.790352	1263.56615	-0.85146	-0.0005388	1.5386	0.00097362	0.68715	0.00043482	632.791149038496	81.967	0.61081	82.71	82.482	83.093	0.74293					18	11	2	0	0	0	0.9754	1	31171	31171		12.241	10.588	1	2921100			57298	12715	41727	42058	55944	55944					-0.05508985906226371
VEDDDPEDN	9	Unmodified	_VEDDDPEDN_					0	0	0		ENSG00000119820|ENST00000238831|YIPF4;ENST00000495355.1_1_2:32503224-32515745:+|nuORF	ENSG00000119820|ENST00000238831|YIPF4	ENSG00000119820|ENST00000238831|YIPF4	MSMS	A375_MHC_IP_R2	2	524.1483764648438	2	524.191091	1046.36763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.46	1	49.218	48.718	49.718	0.75737								0	0	0	0.15486	1	18198	18198		7.9102	0	1				57299	3626	41728	42059	55945	55945					-0.15370088688223404
VEDDLVPEL	9	Unmodified	_VEDDLVPEL_					0	0	0		ENSG00000100219|ENST00000344347|XBP1	ENSG00000100219|ENST00000344347|XBP1	ENSG00000100219|ENST00000344347|XBP1	MULTI-MSMS	A375_MHC_IP_R1	1	515.2203979492188	2	514.760955	1027.50736	-0.5586	-0.00028754	0.81455	0.0004193	0.25596	0.00013176	514.7612133628098	40.857	0.45375	40.857	40.609	41.063	0					11	8	2	0	0	0	0.55818	1	14064	14064		16.942	2.3606	1	1313200			57300	2136	41729	42060	55946	55946					-0.005296796130551229
VEDDPKVHL	9	Unmodified	_VEDDPKVHL_					0	0	0		nc|ENSG00000135111|O15119-3|TBX3;ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3;ENST00000552054.1_1_12:115118611-115121104:-|nuORF	nc|ENSG00000135111|O15119-3|TBX3	nc|ENSG00000135111|O15119-3|TBX3	MULTI-SECPEP	A375_MHC_IP_R2	2	351.5852966308594	3	351.185468	1050.53457	-1.0646	-0.00037389	0.15781	5.5422E-05	-0.90683	-0.00031847	351.1855630648918	29.335	0.30539	30.033	29.93	30.236	0.69872					7	5	2	0	0	0	0.62767	1	10285	10285		11.495	5.2889	1	1995200			57301	4647	41730	42061	55947	55947					0.011328487179980584
VEDEGLRVF	9	Unmodified	_VEDEGLRVF_					0	0	0		ENSG00000185989|ENST00000334062|RASA3	ENSG00000185989|ENST00000334062|RASA3	ENSG00000185989|ENST00000334062|RASA3	MULTI-SECPEP	A375_MHC_IP_R2	2	532.1492309570312	2	532.274564	1062.53457	-0.59521	-0.00031682	2.9	0.0015436	2.3048	0.0012268	532.274527245123	68.421	1.3198	69.156	68.51	69.83	0.73512					59	25	4	0	0	0	0.0575	1	25947	25947		86.332	40.632	1	13567000			57302	8714	41731	42062	55948	55948					0.0058084871798200766
VEDEIDQY	8	Unmodified	_VEDEIDQY_					0	0	0		ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4;ENST00000570300.1_1_17:79575918-79596804:-|nuORF	ENSG00000182446|ENST00000331134|NPLOC4	ENSG00000182446|ENST00000331134|NPLOC4	MSMS	A375_MHC_IP_R2	2	505.6451721191406	2	505.719287	1009.42402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.283	1	70.018	69.518	70.518	0.73421								0	0	0	0.16876	1	26255	26255		9.3474	0	1				57303	8406	41732	42063	55949	55949					-0.0803141606089639
VEDEPCSGSYN	11	Unmodified	_VEDEPCSGSYN_					0	0	0			REV__ENSG00000106302|ENST00000223026|HYAL4	REV__ENSG00000106302|ENST00000223026|HYAL4	MULTI-MSMS	A375_MHC_IP_R2	2	601.1307983398438	2	600.229693	1198.44483	-0.62288	-0.00037387	0.2422	0.00014537	-0.38069	-0.0002285	600.2302932670071	65.336	0.60867	66.074	65.766	66.375	0.73812					29	11	4	0	0	0	0.73378	1	24753	24753		5.2969	1.7004	1	4990100	+		57304	17440	41733	42064	55950	55950					-0.14645193743513119
VEDEQEHY	8	Unmodified	_VEDEQEHY_					0	0	0		nc|ENSG00000143452|Q86X24-2|HORMAD1;ENSG00000143452|ENST00000361824|HORMAD1;nc|ENSG00000143452|Q86X24-4|HORMAD1;nc|ENSG00000143452|Q86X24-5|HORMAD1;nc|ENSG00000143452|Q86X24-3|HORMAD1	nc|ENSG00000143452|Q86X24-2|HORMAD1	nc|ENSG00000143452|Q86X24-2|HORMAD1	MULTI-MSMS	A375_MHC_IP_R1	1	525.114013671875	2	524.714536	1047.41452	-0.48311	-0.00025349	-0.11471	-6.0189E-05	-0.59781	-0.00031368	524.7145317074593	25.266	0.40721	25.266	25.154	25.562	0					13	7	2	0	0	0	0.73946	1	7379	7379		23.148	1.4018	1	4906400			57305	5393	41734	42065	55951	55951					-0.10729184346428156
VEDEQEHY	8	Unmodified	_VEDEQEHY_					0	0	0		nc|ENSG00000143452|Q86X24-2|HORMAD1;ENSG00000143452|ENST00000361824|HORMAD1;nc|ENSG00000143452|Q86X24-4|HORMAD1;nc|ENSG00000143452|Q86X24-5|HORMAD1;nc|ENSG00000143452|Q86X24-3|HORMAD1	nc|ENSG00000143452|Q86X24-2|HORMAD1	nc|ENSG00000143452|Q86X24-2|HORMAD1	MULTI-MSMS	A375_MHC_IP_R2	2	525.1135864257812	2	524.714536	1047.41452	-0.90887	-0.0004769	-0.33506	-0.00017581	-1.2439	-0.00065271	524.7144816973132	24.895	0.40464	25.539	25.314	25.719	0.64368					17	7	3	0	0	0	0.73946	1	8229	8229		23.148	0	1	2702500			57306	5393	41734	42065	55952	55952					-0.10729184346428156
VEDEQTSHF	9	Unmodified	_VEDEQTSHF_					0	0	0		ENST00000511442.1_2_4:87857587-87967329:+|nuORF	ENST00000511442.1_2_4:87857587-87967329:+|nuORF	ENST00000511442.1_2_4:87857587-87967329:+|nuORF	MSMS	A375_MHC_IP_R2	2	546.17529296875	2	546.235635	1090.45672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.826	1	64.566	64.066	65.066	0.74022								0	0	0	0.15486	1	24204	24204		7.9102	0	1				57307	12908	41735	42066	55953	55953					-0.08489208938044612
VEDFAAECIY	10	Unmodified	_VEDFAAECIY_					0	0	0			REV__nc|ENSG00000120802|P42166|TMPO	REV__nc|ENSG00000120802|P42166|TMPO	MULTI-MSMS	A375_MHC_IP_R2	2	580.6527099609375	2	580.25244	1158.49033	-0.27201	-0.00015783	0.20038	0.00011627	-0.071628	-4.1562E-05	580.2524414083264	123.85	0.5596	124.18	124.04	124.6	0.32969					16	10	2	0	0	0	0.53946	1	47739	47739		25.399	4.9457	1	14803000	+		57308	27197	41736	42067	55954	55954					-0.08257923490486974
VEDFDREF	8	Unmodified	_VEDFDREF_					0	0	0		FAM83C|p.P406Wfs*4|1|0.19|ENSG00000125998|chr20:35287559-35287563|GGAGG/-|frameshift_variant;ENSG00000125998|ENST00000374408|FAM83C	FAM83C|p.P406Wfs*4|1|0.19|ENSG00000125998|chr20:35287559-35287563|GGAGG/-|frameshift_variant	FAM83C|p.P406Wfs*4|1|0.19|ENSG00000125998|chr20:35287559-35287563|GGAGG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	528.68359375	2	528.735271	1055.45599	-0.55546	-0.00029369	-0.091903	-4.8592E-05	-0.64736	-0.00034228	528.7352497351186	108.02	0.66499	108.78	108.35	109.02	0.75436					21	12	2	0	0	0	0.75805	1	40723	40723		18.135	1.1927	1	1441600			57309	4018	41737	42068	55955	55955					-0.06952003587093714
VEDFPAPEEY	10	Unmodified	_VEDFPAPEEY_					0	0	0		nc|ENSG00000171475|Q8TF74-2|WIPF2;ENSG00000171475|ENST00000323571|WIPF2;ENST00000494757.5_1_17:38375603-38434474:+|nuORF	nc|ENSG00000171475|Q8TF74-2|WIPF2	nc|ENSG00000171475|Q8TF74-2|WIPF2	MSMS	A375_MHC_IP_R2	2	598.1566162109375	2	598.261319	1194.50808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.8	1	112.52	112.02	113.02	0.72458								0	0	0	0.15308	1	42149	42149		10.824	1.4408	1				57310	7604	41738	42069	55956	55956					-0.08138884963977944
VEDGGLHIF	9	Unmodified	_VEDGGLHIF_					0	0	0			REV__ENST00000504459.5_1_5:74009375-74016573:+|nuORF	REV__ENST00000504459.5_1_5:74009375-74016573:+|nuORF	MSMS	A375_MHC_IP_R2	2	493.6841125488281	2	493.750724	985.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.579	1	61.324	60.824	61.824	0.74503								0	0	0	0.1521	1	22940	22940		18.135	4.6271	1		+		57311	16383	41739	42070	55957	55957					-0.00642805482186759
VEDGIGHEF	9	Unmodified	_VEDGIGHEF_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP;ENST00000496607.5_1_21:47655184-47686088:-|nuORF;ENST00000486937.5_1_21:47655184-47666418:-|nuORF;nc|ENSG00000160294|O60318-2|MCM3AP;ENST00000467026.5_1_21:47655184-47679082:-|nuORF	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	A375_MHC_IP_R2	2	502.1947021484375	2	501.729989	1001.44543	-0.74481	-0.00037369	-0.42058	-0.00021102	-1.1654	-0.00058471	501.7299289478253	44.823	0.35968	45.593	45.39	45.75	0.7691					10	6	2	0	0	0	0.65721	2	16743	16743;16781		10.824	0.75	1	901180			57312	6414	41740	42071	55958;55959	55958					-0.055239862415191965
VEDGPSPNY	9	Unmodified	_VEDGPSPNY_					0	0	0			REV__ENSG00000067191|ENST00000394303|CACNB1	REV__ENSG00000067191|ENST00000394303|CACNB1	MULTI-SECPEP	A375_MHC_IP_R1	1	489.6136779785156	2	489.214172	976.413791	-0.1729	-8.4584E-05	-0.94539	-0.0004625	-1.1183	-0.00054708	489.21367344556234	56.546	0.55978	56.546	56.244	56.804	0					22	10	3	0	0	0	0.3213	1	20262	20262		37.974	14.826	1	2165600	+		57313	16529	41741	42072	55960	55960					-0.07535978995474579
VEDGPSPNY	9	Unmodified	_VEDGPSPNY_					0	0	0			REV__ENSG00000067191|ENST00000394303|CACNB1	REV__ENSG00000067191|ENST00000394303|CACNB1	MULTI-SECPEP	A375_MHC_IP_R1	1	489.6141662597656	2	489.214172	976.413791	-0.37668	-0.00018428	0.20051	9.8091E-05	-0.17617	-8.6185E-05	489.214195089298	36.994	0.60598	36.994	36.695	37.301	0					22	11	3	0	0	0	0.20567	1	12418	12418		54.774	16.622	1	4165700	+		57314	16529	41741	42072	55961	55961					-0.07535978995474579
VEDGPSPNY	9	Unmodified	_VEDGPSPNY_					0	0	0			REV__ENSG00000067191|ENST00000394303|CACNB1	REV__ENSG00000067191|ENST00000394303|CACNB1	MULTI-MSMS	A375_MHC_IP_R2	2	489.6447448730469	2	489.214172	976.413791	-0.70735	-0.00034605	-0.51916	-0.00025398	-1.2265	-0.00060003	489.21387669259724	55.908	0.76245	56.659	56.186	56.948	0.75015					26	14	3	0	0	0	0.29981	2	21078	21078;21176		30.637	1.3304	1	3088200	+		57315	16529	41741	42072	55962;55963	55962					-0.07535978995474579
VEDGPSPNY	9	Unmodified	_VEDGPSPNY_					0	0	0			REV__ENSG00000067191|ENST00000394303|CACNB1	REV__ENSG00000067191|ENST00000394303|CACNB1	MULTI-SECPEP	A375_MHC_IP_R2	2	489.6447448730469	2	489.214172	976.413791	-0.70735	-0.00034605	-0.51916	-0.00025398	-1.2265	-0.00060003	489.21387669259724	55.908	0.76245	56.659	56.186	56.948	0.75015					26	14	3	0	0	0	0.4261	1	21078	21078		30.637	0.41173	1	3088200	+		57316	16529	41741	42072	55964	55964					-0.07535978995474579
VEDGPSPNY	9	Unmodified	_VEDGPSPNY_					0	0	0			REV__ENSG00000067191|ENST00000394303|CACNB1	REV__ENSG00000067191|ENST00000394303|CACNB1	MULTI-SECPEP	A375_MHC_IP_R2	2	488.6900634765625	2	489.214172	976.413791	-0.76215	-0.00037285	0.03427	1.6765E-05	-0.72788	-0.00035609	489.2140978797748	36.323	0.66218	37.094	36.799	37.461	0.7709					24	12	3	0	0	0	0.20567	1	13219	13219		54.774	16.8	1	4668400	+		57317	16529	41741	42072	55965	55965					-0.07535978995474579
VEDHLLSFD	9	Unmodified	_VEDHLLSFD_					0	0	0			REV__ENST00000498794.1_1_3:49053470-49053815:-|nuORF	REV__ENST00000498794.1_1_3:49053470-49053815:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	538.157958984375	2	537.758746	1073.50294	-0.49448	-0.00026591	-0.48489	-0.00026076	-0.97937	-0.00052667	537.7583121269217	71.553	0.60339	71.553	71.262	71.866	0					18	11	3	0	0	0	0.46038	1	26021	26021		21.747	2.4897	1	6190400	+		57318	24963	41742	42073	55966	55966					-0.03087144035930578
VEDIAKKMVI	10	Unmodified	_VEDIAKKMVI_					0	0	0			REV__tr|U7T185|U7T185_FUSNUTriggerfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tigPE=3SV=1	REV__tr|U7T185|U7T185_FUSNUTriggerfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tigPE=3SV=1	MSMS	A375_MHC_IP_R1	1	382.6087951660156	3	382.558137	1144.65258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.158	1	39.158	38.658	39.658	0								0	0	0	0.15353	1	13355	13355		5.4027	1.2861	1		+		57319	28698	41743	42074	55967	55967					0.08604084982312088
VEDIETKE	8	Unmodified	_VEDIETKE_					0	0	0			REV__ENSG00000155304|ENST00000285667|HSPA13	REV__ENSG00000155304|ENST00000285667|HSPA13	MULTI-SECPEP	A375_MHC_IP_R1	1	961.961181640625	1	962.467683	961.460406	-0.46406	-0.00044664	-1.1425	-0.0010996	-1.6066	-0.0015463	962.4694579139131	122.78	0.30283	122.78	122.63	122.93	0					6	5	2	0	0	0	0.972	1	45735	45735		13.508	0	1	57145000	+		57320	19920	41744	42075	55968	55968					-0.021865391641881615
VEDIRSTYF	9	Unmodified	_VEDIRSTYF_					0	0	0			REV__ENSG00000145990|ENST00000379287|GFOD1	REV__ENSG00000145990|ENST00000379287|GFOD1	MULTI-SECPEP	A375_MHC_IP_R1	1	565.6798095703125	2	565.279846	1128.54514	-0.36239	-0.00020485	0.034408	1.945E-05	-0.32798	-0.0001854	565.2797935536321	46.171	0.70651	46.171	45.839	46.545	0					50	13	5	0	0	0	0.04395	1	16136	16136		92.491	12.895	1	33792000	+		57321	19509	41745	42076	55969	55969					-0.013991686275630855
VEDIRSTYF	9	Unmodified	_VEDIRSTYF_					0	0	0			REV__ENSG00000145990|ENST00000379287|GFOD1	REV__ENSG00000145990|ENST00000379287|GFOD1	MULTI-SECPEP	A375_MHC_IP_R2	2	565.6795654296875	2	565.279846	1128.54514	-0.49696	-0.00028092	-0.031124	-1.7594E-05	-0.52808	-0.00029851	565.2798068289306	45.36	0.85711	46.125	45.796	46.654	0.76519					49	16	5	0	0	0	0.10103	1	16905	16905		71.922	10.32	1	38307000	+		57322	19509	41745	42076	55970	55970					-0.013991686275630855
VEDKHKILY	9	Unmodified	_VEDKHKILY_					0	0	0		ENSG00000154080|ENST00000618847|CHST9	ENSG00000154080|ENST00000618847|CHST9	ENSG00000154080|ENST00000618847|CHST9	MULTI-SECPEP	A375_MHC_IP_R2	2	573.4630737304688	2	572.821681	1143.62881	-0.84488	-0.00048397	0.46698	0.0002675	-0.3779	-0.00021647	572.8217178343394	53.204	0.45918	53.955	53.688	54.147	0.75105					12	8	2	0	0	0	0.76187	1	19978	19978		7.2892	0	1	906250			57323	6055	41746	42077	55971	55971					0.0627398754013484
VEDLFKCIY	9	Unmodified	_VEDLFKCIY_					0	0	0			REV__nc|ENSG00000128805|Q7Z5H3-3|ARHGAP22	REV__nc|ENSG00000128805|Q7Z5H3-3|ARHGAP22	MULTI-SECPEP	A375_MHC_IP_R2	2	565.6824951171875	2	565.283543	1128.55253	-0.39836	-0.00022518	-2.176	-0.0012301	-2.5743	-0.0014552	565.2827203316896	83.713	1.4798	84.453	83.745	85.225	0.73962					38	28	3	0	0	0	0.50702	1	31747	31747		32.305	5.4218	1	2793200	+		57324	18468	41747	42078	55972	55972					-0.0066015235152008245
VEDLKTVHHYH	11	Unmodified	_VEDLKTVHHYH_					0	0	0			REV__ENSG00000110881|ENST00000447966|ASIC1	REV__ENSG00000110881|ENST00000447966|ASIC1	MSMS	A375_MHC_IP_R1	1	689.3497314453125	2	689.349126	1376.6837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.37	1	121.37	120.87	121.87	0								0	0	0	0.16203	1	45064	45064		8.1555	0	1		+		57325	17645	41748	42079	55973	55973					0.010423743407500297
VEDLSESLLAM	11	Unmodified	_VEDLSESLLAM_					0	0	0			REV__FAM83D|p.G7S|1|0.3|ENSG00000101447|chr20:38926461-38926461|G/A|missense_variant	REV__FAM83D|p.G7S|1|0.3|ENSG00000101447|chr20:38926461-38926461|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	604.1990356445312	2	603.799754	1205.58495	-0.38747	-0.00023395	-1.2895	-0.00077859	-1.677	-0.0010125	603.7988018091604	98.618	0.55941	99.377	99.098	99.657	0.75977					21	10	3	0	0	0	0.95991	1	37414	37414		18.146	1.0335	1	3562800	+		57326	26615	41749	42080	55974	55974					-0.00961409739170449
VEDNNDNVPD	10	Unmodified	_VEDNNDNVPD_					0	0	0		PCDHA4|p.E339K|1|0.44|ENSG00000204967|chr5:140808202-140808202|G/A|missense_variant;nc|ENSG00000204967|Q9UN74-2|PCDHA4;ENSG00000204967|ENST00000530339|PCDHA4	PCDHA4|p.E339K|1|0.44|ENSG00000204967|chr5:140808202-140808202|G/A|missense_variant	PCDHA4|p.E339K|1|0.44|ENSG00000204967|chr5:140808202-140808202|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	566.180908203125	2	565.733457	1129.45236	-0.52535	-0.00029721	-4.3784	-0.002477	-4.9038	-0.0027742	566.2326654841382	80.954	0.15266	81.699	81.572	81.724	0.74474					4	2	2	0	0	0	0.53946	1	30692	30692		25.399	10.151	1	376700			57327	9491	41750	42081	55975	55975					-0.10718718151611029
VEDPNSNKN	9	Unmodified	_VEDPNSNKN_					0	0	0			REV__nc|ENSG00000111199|Q9HBA0-6|TRPV4	REV__nc|ENSG00000111199|Q9HBA0-6|TRPV4	MULTI-MSMS	A375_MHC_IP_R1	1	509.1374816894531	2	508.735803	1015.45705	-0.31807	-0.00016181	2.724	0.0013858	2.4059	0.001224	508.73762784043765	40.534	0.86011	40.534	40.203	41.063	0					20	16	2	0	0	0	0.32092	1	13933	13933		29.082	2.1979	1	2580300	+		57328	17652	41751	42082	55976	55976					-0.05005789218193968
VEDPNSNKN	9	Unmodified	_VEDPNSNKN_					0	0	0			REV__nc|ENSG00000111199|Q9HBA0-6|TRPV4	REV__nc|ENSG00000111199|Q9HBA0-6|TRPV4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	508.735803	1015.45705	-0.78435	-0.00039903	3.8683	0.0019679	3.0839	0.0015689	508.7378535238778	39.773	0.35577	40.548	40.371	40.727	0.77451	0.0072037	0.00014761	NaN	29.082	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2259000	+		57329	17652	41751	42082							-0.05005789218193968
VEDRALPGW	9	Unmodified	_VEDRALPGW_					0	0	0		ENST00000341105.6_1_3:128199686-128199854:-|nuORF	ENST00000341105.6_1_3:128199686-128199854:-|nuORF	ENST00000341105.6_1_3:128199686-128199854:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	522.197509765625	2	521.769448	1041.52434	-0.5592	-0.00029177	-0.089858	-4.6885E-05	-0.64906	-0.00033866	521.7694150198085	76.294	0.60598	76.294	75.966	76.572	0					17	11	2	0	0	0	0.5212	1	27887	27887		26.268	8.1218	1	4995800			57330	10863	41752	42083	55977	55977					0.005242857833991366
VEDRFDVSF	9	Unmodified	_VEDRFDVSF_					0	0	0			REV__ENSG00000138615|ENST00000261883|CILP	REV__ENSG00000138615|ENST00000261883|CILP	MULTI-SECPEP	A375_MHC_IP_R1	1	557.663330078125	2	557.264196	1112.51384	-0.34497	-0.00019224	-0.56439	-0.00031452	-0.90936	-0.00050676	557.263741923195	71.6	0.55415	71.6	71.211	71.765	0					22	10	3	0	0	0	0.69507	1	26032	26032		19.257	6.2145	1	4834700	+		57331	19101	41753	42084	55978	55978					-0.03791741661666492
VEDSHTSLL	9	Unmodified	_VEDSHTSLL_					0	0	0			REV__ENSG00000162928|ENST00000295030|PEX13	REV__ENSG00000162928|ENST00000295030|PEX13	MSMS	A375_MHC_IP_R2	2	500.695068359375	2	500.750921	999.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.31	1	57.06	56.56	57.56	0.75015								0	0	0	0.15486	1	21283	21283		12.532	1.7076	1		+		57332	20323	41754	42085	55979	55979					-0.01247430552973583
VEDSYGQQW	9	Unmodified	_VEDSYGQQW_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-SECPEP	A375_MHC_IP_R2	2	555.6842041015625	2	556.238178	1110.4618	-1.1419	-0.00063515	2.1177	0.001178	0.97586	0.00054281	556.2397799969381	57.246	0.45795	57.995	57.814	58.272	0.74894					13	8	2	0	0	0	0.75466	1	21640	21640		7.9102	3.1541	1	2350300			57333	6659	41755	42086	55980	55980					-0.08900905075415722
VEDSYYSY	8	Unmodified	_VEDSYYSY_					0	0	0			REV__BRCA2|p.H1752Y|1|0.33|ENSG00000139618|chr13:32339609-32339609|C/T|missense_variant	REV__BRCA2|p.H1752Y|1|0.33|ENSG00000139618|chr13:32339609-32339609|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	513.6737670898438	2	513.208555	1024.40256	-0.49349	-0.00025326	1.1395	0.00058479	0.64599	0.00033153	513.2095038606753	74.171	0.45604	74.171	73.893	74.349	0					12	8	2	0	0	0	0.77488	1	26980	26980		13.508	1.8676	1	649030	+		57334	15522	41756	42087	55981	55981					-0.10866801089616729
VEDTDFFLKI	10	Unmodified	_VEDTDFFLKI_					0	0	0		ENST00000565598.2_1_16:53404185-53404910:-|nuORF	ENST00000565598.2_1_16:53404185-53404910:-|nuORF	ENST00000565598.2_1_16:53404185-53404910:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	613.9777221679688	2	613.818804	1225.62306	-0.54593	-0.0003351	1.8641	0.0011442	1.3181	0.00080909	614.3239383004087	86.083	0.35329	86.083	85.87	86.224	0					8	6	2	0	0	0	0.91909	1	31494	31494		2.9952	0	1	1318800			57335	13547	41757	42088	55982	55982					0.019268442378233885
VEDTNMIY	8	Unmodified	_VEDTNMIY_					0	0	0		ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MULTI-MSMS	A375_MHC_IP_R1	1	492.6873474121094	2	492.720775	983.426998	-0.24045	-0.00011847	0.82559	0.00040679	0.58514	0.00028831	492.7211540996591	92.017	0.5556	92.017	91.756	92.312	0					17	10	2	0	0	0	0.7754	1	33821	33821		11.64	2.2929	1	1404500			57336	3082	41758	42089	55983	55983					-0.06537864207723487
VEDVEHKQKQ	10	Unmodified	_VEDVEHKQKQ_					0	0	0			REV__nc|ENSG00000258537|P0C7T7|FRMD6-AS1	REV__nc|ENSG00000258537|P0C7T7|FRMD6-AS1	MULTI-SECPEP	A375_MHC_IP_R1	1	414.2908935546875	3	413.882448	1238.62551	0.24299	0.00010057	-2.1701	-0.00089815	-1.9271	-0.00079758	413.8813327168863	40.19	0.25533	40.19	39.999	40.254	0					6	4	2	0	0	0	0.93578	1	13801	13801		8.9762	0	1	1499200	+		57337	27533	41759	42090	55984	55984					0.015746926954761875
VEDVICFNL	9	Unmodified	_VEDVICFNL_					0	0	0			REV__tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	REV__tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	526.21337890625	2	526.260068	1050.50558	-0.069924	-3.6798E-05	-0.7207	-0.00037928	-0.79062	-0.00041607	526.2593700595646	126.73	0.25492	126.73	126.61	126.86	0					7	4	2	0	0	0	0.32899	1	48516	48516		28.487	5.3384	1	6864900	+		57338	28295	41760	42091	55985	55985					-0.01765011902648439
VEDVICFNL	9	Unmodified	_VEDVICFNL_					0	0	0			REV__tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	REV__tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	526.2140502929688	2	526.260068	1050.50558	-0.41479	-0.00021829	0.54815	0.00028847	0.13336	7.0183E-05	526.2603498064545	126.36	0.30215	126.66	126.48	126.78	0.2951					9	5	2	0	0	0	0.3054	1	49478	49478		30.225	7.0764	1	6075300	+		57339	28295	41760	42091	55986	55986					-0.01765011902648439
VEDVICFNL	9	Unmodified	_VEDVICFNL_					0	0	0			REV__tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	REV__tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	526.260068	1050.50558	-0.069924	-3.6798E-05	-0.7207	-0.00037928	-0.79062	-0.00041607	526.2593700595646	126.73	0.25492	126.73	126.61	126.86	0	0.038279	-0.00084377	NaN	30.225	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6864900	+		57340	28295	41760	42091							-0.01765011902648439
VEEAEGKDAF	10	Unmodified	_VEEAEGKDAF_					0	0	0		ENST00000361383.10_1_20:36396391-36405763:+|nuORF	ENST00000361383.10_1_20:36396391-36405763:+|nuORF	ENST00000361383.10_1_20:36396391-36405763:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	547.1290283203125	2	547.753661	1093.49277	-0.43132	-0.00023626	0.12175	6.6687E-05	-0.30957	-0.00016957	547.7535004427482	71.082	0.4621	71.082	70.749	71.211	0					10	8	2	0	0	0	0.9269	1	25786	25786		3.5965	0	1	1200700			57341	11045	41761	42092	55987	55987					-0.05023751761177664
VEEATLPV	8	Unmodified	_VEEATLPV_					0	0	0			REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	MSMS	A375_MHC_IP_R2	2	429.2908935546875	2	429.234376	856.454199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.687	1	39.462	38.962	39.962	0.77451								0	0	0	0.16876	1	14257	14257		5.2307	2.3415	1		+		57342	15715	41762	42093	55988	55988					0.020229873949688226
VEEDEDDDHD	10	Unmodified	_VEEDEDDDHD_					0	0	0			REV__nc|ENSG00000077235|Q12789-3|GTF3C1	REV__nc|ENSG00000077235|Q12789-3|GTF3C1	MSMS	A375_MHC_IP_R2	2	609.2215576171875	2	609.207469	1216.40038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.914	1	32.651	32.151	33.151	0.73692								0	0	0	0.15591	1	11312	11312		1.6526	0	1		+		57343	27118	41763	42094	55989	55989					-0.199159263560432
VEEDELEAL	9	Unmodified	_VEEDELEAL_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-SECPEP	A375_MHC_IP_R2	2	524.3750610351562	2	523.748044	1045.48154	-0.63762	-0.00033395	0.044427	2.3268E-05	-0.5932	-0.00031068	523.7480138580291	66.713	0.25552	67.449	67.24	67.495	0.73631					5	4	2	0	0	0	0.75466	1	25238	25238		4.3292	0	1	560620			57344	4576	41764	42095	55990	55990					-0.039385738553392
VEEDPVWLK	9	Unmodified	_VEEDPVWLK_					0	0	0			REV__ENSG00000083642|ENST00000315596|PDS5B	REV__ENSG00000083642|ENST00000315596|PDS5B	MULTI-MSMS	A375_MHC_IP_R1	1	372.5973815917969	3	372.197485	1113.57063	0.0035019	1.3034E-06	-0.21728	-8.087E-05	-0.21378	-7.9567E-05	372.19737282994885	26.499	0.40627	26.499	26.322	26.728	0					12	7	2	0	0	0	0.65721	1	7940	7940		7.1017	1.3183	1	3691800	+		57345	16808	41765	42096	55991	55991					0.018383058948302278
VEEDSDMQSP	10	Unmodified	_VEEDSDMQSP_					0	0	0			REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	MSMS	A375_MHC_IP_R1	1	568.7086791992188	2	568.724243	1135.43393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.008	1	29.008	28.508	29.508	0								0	0	0	0.15207	1	9019	9019		13.906	5.1606	1		+		57346	19606	41766	42097	55992	55992					-0.12836596117836052
VEEEAKREYY	10	Unmodified	_VEEEAKREYY_					0	0	0			REV__nc|ENSG00000011275|Q9NWF9-3|RNF216	REV__nc|ENSG00000011275|Q9NWF9-3|RNF216	MSMS	A375_MHC_IP_R2	2	658.330810546875	2	658.311874	1314.6092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.669	1	84.409	83.909	84.909	0.73962								0	0	0	0.15435	1	31803	31803		6.7232	1.4263	1		+		57347	16205	41767	42098	55993	55993					-0.03552433261279475
VEEEDDDDY	9	Unmodified	_VEEEDDDDY_					0	0	0		nc|ENSG00000188522|A6ND36-2|FAM83G;ENST00000399096.2_1_17:18880803-18882234:-|nuORF;ENSG00000188522|ENST00000388995|FAM83G	nc|ENSG00000188522|A6ND36-2|FAM83G	nc|ENSG00000188522|A6ND36-2|FAM83G	MULTI-MSMS	A375_MHC_IP_R1	1	564.6842041015625	2	564.696206	1127.37786	-0.47693	-0.00026932	-1.4427	-0.00081471	-1.9197	-0.001084	564.6959248424488	87.287	0.56155	87.287	87.134	87.696	0					16	10	2	0	0	0	0.72507	1	31989	31989		4.756	0.42677	1	1345700			57348	8911	41768	42099	55994	55994					-0.18073525753652575
VEEEDEKKTP	10	Unmodified	_VEEEDEKKTP_					0	0	0			REV__nc|ENSG00000196091|Q00872-7|MYBPC1	REV__nc|ENSG00000196091|Q00872-7|MYBPC1	MSMS	A375_MHC_IP_R2	2	602.6926879882812	2	602.290608	1202.56666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.464	1	78.207	77.707	78.707	0.74293								0	0	0	0.15435	1	29416	29416		6.7232	0	1		+		57349	27433	41769	42100	55995	55995					-0.0265182838952569
VEEEEEFQE	9	Unmodified	_VEEEEEFQE_					0	0	0		ENSG00000101463|ENST00000376862|SYNDIG1	ENSG00000101463|ENST00000376862|SYNDIG1	ENSG00000101463|ENST00000376862|SYNDIG1	MULTI-MSMS	A375_MHC_IP_R1	1	584.1397705078125	2	584.238041	1166.46153	-0.26227	-0.00015323	0.96279	0.0005625	0.70052	0.00040927	584.2387336078837	83.466	1.0642	83.466	82.772	83.837	0					37	20	3	0	0	0	0.69674	1	30387	30387		7.2892	0	1	6192200			57350	2301	41770	42101	55996	55996					-0.11504369585941276
VEEEEEFQE	9	Unmodified	_VEEEEEFQE_					0	0	0		ENSG00000101463|ENST00000376862|SYNDIG1	ENSG00000101463|ENST00000376862|SYNDIG1	ENSG00000101463|ENST00000376862|SYNDIG1	MULTI-MSMS	A375_MHC_IP_R2	2	584.6382446289062	2	584.238041	1166.46153	-0.46207	-0.00026996	0.48001	0.00028044	0.017937	1.048E-05	584.238230506454	82.835	0.60529	83.578	83.245	83.851	0.74255					33	11	4	0	0	0	0.65721	1	31433	31433		10.824	0.75	1	5354400			57351	2301	41770	42101	55997	55997					-0.11504369585941276
VEEEGGRSL	9	Unmodified	_VEEEGGRSL_					0	0	0			REV__ENST00000551964.5_2_12:99038968-99039502:+|nuORF	REV__ENST00000551964.5_2_12:99038968-99039502:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	488.6403503417969	2	488.240721	974.466889	-0.28443	-0.00013887	-0.70823	-0.00034579	-0.99266	-0.00048466	488.24033437495973	99.554	1.7703	99.554	99.117	100.89	0					81	34	4	0	0	0	0.51106	1	36499	36499		19.257	1.122	1	37531000	+		57352	26047	41771	42102	55998	55998					-0.02136601212782807
VEEEKAADID	10	Unmodified	_VEEEKAADID_					0	0	0		nc|ENSG00000172943|Q9UPP1-5|PHF8;nc|ENSG00000172943|Q9UPP1-4|PHF8;nc|ENSG00000172943|Q9UPP1-3|PHF8;ENSG00000172943|ENST00000338154|PHF8;nc|ENSG00000172943|Q9UPP1|PHF8	nc|ENSG00000172943|Q9UPP1-5|PHF8	nc|ENSG00000172943|Q9UPP1-5|PHF8	MSMS	A375_MHC_IP_R1	1	559.697021484375	2	559.764226	1117.5139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.74	1	28.74	28.24	29.24	0								0	0	0	0.15288	1	8907	8907		11.495	0.67078	1				57353	7751	41772	42103	55999	55999					-0.040157864523280296
VEEEKLKEP	9	Unmodified	_VEEEKLKEP_					0	0	0			REV__ENSG00000248713|ENST00000511828|C4orf54	REV__ENSG00000248713|ENST00000511828|C4orf54	MULTI-SECPEP	A375_MHC_IP_R1	1	551.1958618164062	2	550.795329	1099.5761	-0.54009	-0.00029748	0.25231	0.00013897	-0.28778	-0.00015851	550.7954208226553	57.623	0.50871	57.623	57.364	57.873	0					18	9	2	0	0	0	0.40377	1	20657	20657		24.021	3.5669	1	6747500	+		57354	22832	41773	42104	56000	56000					0.030299846866682856
VEEELSEPVT	10	Unmodified	_VEEELSEPVT_					0	0	0			REV__ZC3H11A|p.P109L|1|0.3|ENSG00000058673|chr1:203829478-203829478|C/T|missense_variant	REV__ZC3H11A|p.P109L|1|0.3|ENSG00000058673|chr1:203829478-203829478|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	566.3235473632812	2	566.274426	1130.5343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.71	1	124.04	123.54	124.54	0.32969								0	0	0	0.15332	1	47640	47640		10.074	0	1		+		57355	29013	41774	42105	56001	56001					-0.025746157925141233
VEEENFAW	8	Unmodified	_VEEENFAW_					0	0	0			REV__tr|U7STF1|U7STF1_FUSNUExodeoxyribonuclease7largesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=xseAPE=3SV=1	REV__tr|U7STF1|U7STF1_FUSNUExodeoxyribonuclease7largesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=xseAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	513.0990600585938	2	512.224539	1022.43453	-0.75575	-0.00038711	0.2722	0.00013943	-0.48355	-0.00024769	512.224808275293	108.1	0.51189	108.86	108.61	109.12	0.75436					12	9	2	0	0	0	0.77686	1	40820	40820		6.3541	1.1234	1	957670	+		57356	28482	41775	42106	56002	56002					-0.07579388615806693
VEEERNPL	8	Unmodified	_VEEERNPL_					0	0	0		nc|ENSG00000186471|Q86UN6-3|AKAP14;nc|ENSG00000186471|Q86UN6-2|AKAP14;ENSG00000186471|ENST00000371431|AKAP14	nc|ENSG00000186471|Q86UN6-3|AKAP14	nc|ENSG00000186471|Q86UN6-3|AKAP14	MULTI-MSMS	A375_MHC_IP_R1	1	493.6506042480469	2	493.251089	984.487624	-0.5505	-0.00027153	-0.61666	-0.00030417	-1.1672	-0.0005757	493.2507635041426	85.324	0.61075	85.324	85.056	85.667	0					21	11	3	0	0	0	0.77515	1	31247	31247		12.532	0	1	3877700			57357	8748	41776	42107	56003	56003					-0.005240108331463489
VEEERTLNPRL	11	Unmodified	_VEEERTLNPRL_					0	0	0		ENSG00000105755|ENST00000292147|ETHE1	ENSG00000105755|ENST00000292147|ETHE1	ENSG00000105755|ENST00000292147|ETHE1	MULTI-MSMS	A375_MHC_IP_R1	1	452.646484375	3	452.580769	1354.72048	-0.33942	-0.00015361	0.6051	0.00027386	0.26568	0.00012024	452.580897552929	94.537	0.40996	94.537	94.291	94.701	0					10	7	2	0	0	0	0.73078	1	34749	34749		4.1166	0	1	1509300			57358	2635	41777	42108	56004	56004					0.05730626166655384
VEEEYFEW	8	Unmodified	_VEEEYFEW_					0	0	0		tr|U7T0W2|U7T0W2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00698PE=4SV=1	tr|U7T0W2|U7T0W2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00698PE=4SV=1	tr|U7T0W2|U7T0W2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00698PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	566.1361694335938	2	565.73748	1129.46041	-0.481	-0.00027212	-1.1636	-0.00065827	-1.6446	-0.00093039	565.7370542619967	82.128	0.50899	82.871	82.584	83.093	0.74293					17	9	2	0	0	0	0.97144	1	31169	31169		9.3474	5.403	1	2701300			57359	29891	41778	42109	56005	56005					-0.0991453916417413
VEEFDESF	8	Unmodified	_VEEFDESF_					0	0	0			REV__ENST00000468576.1_1_3:62229532-62248574:+|nuORF	REV__ENST00000468576.1_1_3:62229532-62248574:+|nuORF	MSMS	A375_MHC_IP_R1	1	501.15887451171875	2	501.208555	1000.40256	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.167	1	60.167	59.667	60.667	0								0	0	0	0.16876	1	21659	21659		14.582	2.0501	1		+		57360	19441	41779	42110	56006	56006					-0.09762801089607365
VEEGEMGDEE	10	Unmodified	_VEEGEMGDEE_					0	0	0		ENST00000582313.5_1_18:245829-268019:-|nuORF;nc|ENSG00000079134|Q96FV9-2|THOC1;ENST00000578529.5_1_18:214628-260326:-|nuORF;ENSG00000079134|ENST00000261600|THOC1	ENST00000582313.5_1_18:245829-268019:-|nuORF	ENST00000582313.5_1_18:245829-268019:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	561.893798828125	2	562.208426	1122.4023	-0.66025	-0.0003712	2.2779	0.0012807	1.6177	0.00090948	562.2093626279415	85.781	0.2037	85.781	85.667	85.87	0					5	3	2	0	0	0	0.93961	1	31465	31465		6.2058	1.8765	1	508820			57361	1687	41780	42111	56007	56007					-0.1540058887176201
VEEIFCKVRF	10	Unmodified	_VEEIFCKVRF_					0	0	0		CASP1|p.R371C|1|0.29|ENSG00000137752|chr11:105026847-105026847|G/A|missense_variant	CASP1|p.R371C|1|0.29|ENSG00000137752|chr11:105026847-105026847|G/A|missense_variant	CASP1|p.R371C|1|0.29|ENSG00000137752|chr11:105026847-105026847|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	424.6274108886719	3	423.893519	1268.65873	-0.20815	-8.8233E-05	-1.5339	-0.00065019	-1.742	-0.00073842	424.2274072601854	40.189	0.50708	40.963	40.727	41.234	0.77451					14	9	2	0	0	0	0.92199	1	14872	14872		10.899	0	1	7614500			57362	293	41781	42112	56008	56008					0.03514603213807277
VEEIFNLKF	9	Unmodified	_VEEIFNLKF_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-SECPEP	A375_MHC_IP_R1	1	569.677001953125	2	569.810782	1137.60701	0.017673	1.007E-05	-0.29623	-0.0001688	-0.27856	-0.00015873	569.8106770024824	112.53	0.51067	112.53	112.23	112.74	0					15	9	2	0	0	0	0.34746	1	41202	41202		24.991	5.629	1	4595500			57363	9951	41782	42113	56009	56009					0.04371182791555839
VEEIFNLKF	9	Unmodified	_VEEIFNLKF_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-SECPEP	A375_MHC_IP_R2	2	570.2110595703125	2	569.810782	1137.60701	-0.13113	-7.4718E-05	0.073005	4.1599E-05	-0.058123	-3.3119E-05	569.8108339660955	111.61	0.5116	112.34	112.15	112.66	0.72459					18	9	3	0	0	0	0.33896	1	42085	42085		40.239	13.971	1	3216200			57364	9951	41782	42113	56010	56010					0.04371182791555839
VEEIKEAHKN	10	Unmodified	_VEEIKEAHKN_					0	0	0			REV__ENST00000478693.1_1_7:100484981-100485835:+|nuORF	REV__ENST00000478693.1_1_7:100484981-100485835:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	399.2715148925781	3	399.547177	1195.6197	-0.34782	-0.00013897	-0.027835	-1.1121E-05	-0.37566	-0.00015009	399.8814535956084	24.622	0.30166	24.622	24.447	24.749	0					7	5	2	0	0	0	0.93999	1	7040	7040		4.7159	2.9736	1	2747100	+		57365	16864	41783	42114	56011	56011					0.02971594183804882
VEEINKQFKK	10	Unmodified	_VEEINKQFKK_					0	0	0			REV__ENSG00000255009|ENST00000530464|UBTFL1	REV__ENSG00000255009|ENST00000530464|UBTFL1	MULTI-MSMS	A375_MHC_IP_R1	1	421.61895751953125	3	421.574955	1261.70304	0.098956	4.1717E-05	-0.28613	-0.00012062	-0.18717	-7.8906E-05	421.5748468205133	20.332	0.65862	20.332	19.98	20.638	0					44	12	5	0	0	0	0.70174	1	5319	5319		11.518	3.0736	1	40385000	+		57366	22869	41784	42115	56012	56012					0.08265330631661527
VEEITAKR	8	Unmodified	_VEEITAKR_					0	0	0		tr|U7SM15|U7SM15_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02048PE=4SV=1	tr|U7SM15|U7SM15_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02048PE=4SV=1	tr|U7SM15|U7SM15_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02048PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	945.8477172851562	1	945.536372	944.529095	-0.21693	-0.00020512	-0.36001	-0.0003404	-0.57694	-0.00054552	945.5359157045053	48.5	0.45614	49.257	49.08	49.536	0.75737					14	8	2	0	0	0	0.92636	1	18203	18203		11.64	3.047	1	2222100			57367	29517	41785	42116	56013	56013					0.05461169926184084
VEEITAKR	8	Unmodified	_VEEITAKR_					0	0	0		tr|U7SM15|U7SM15_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02048PE=4SV=1	tr|U7SM15|U7SM15_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02048PE=4SV=1	tr|U7SM15|U7SM15_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02048PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		1	945.536372	944.529095	0.40049	0.00037868	-0.15082	-0.00014261	0.24967	0.00023607	945.5361058347188	49.481	0.40671	49.481	49.235	49.642	0	0.11186	0.00012345	NaN	11.64	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2689300			57368	29517	41785	42116							0.05461169926184084
VEEKAVRFD	9	Unmodified	_VEEKAVRFD_					0	0	0		CSMD3|p.G3691E|1|0.41|ENSG00000164796|chr8:112224823-112224823|C/T|missense_variant	CSMD3|p.G3691E|1|0.41|ENSG00000164796|chr8:112224823-112224823|C/T|missense_variant	CSMD3|p.G3691E|1|0.41|ENSG00000164796|chr8:112224823-112224823|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	546.203369140625	2	546.787838	1091.56112	-0.8005	-0.0004377	-0.1463	-7.9993E-05	-0.94679	-0.0005177	546.7879052031255	77.685	0.40808	78.428	78.216	78.624	0.74293					11	7	2	0	0	0	0.67539	1	29566	29566		21.537	2.28	1	898530			57369	674	41786	42117	56014	56014					0.019005376093446102
VEELARLEE	9	Unmodified	_VEELARLEE_					0	0	0			REV__ENSG00000203942|ENST00000370640|C10orf62	REV__ENSG00000203942|ENST00000370640|C10orf62	MULTI-SECPEP	A375_MHC_IP_R2	2	544.6880493164062	2	544.285128	1086.5557	-0.78417	-0.00042681	-0.4382	-0.00023851	-1.2224	-0.00066532	544.2880888085418	78.181	0.6635	78.924	78.52	79.183	0.74293					35	12	5	0	0	0	0.54812	1	29672	29672		19.362	3.2128	1	3692600	+		57370	22478	41787	42118	56015	56015					0.015888140268771167
VEELFERKY	9	Unmodified	_VEELFERKY_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	A375_MHC_IP_R1	1	405.2801513671875	3	404.880156	1211.61864	-0.21335	-8.6383E-05	0.29567	0.00011971	0.082321	3.333E-05	404.880270960725	42.821	2.1899	42.821	42.487	44.676	0					120	42	5	0	0	0	0.01185	1	14800	14800		93.938	58.326	1	142990000			57371	9951	41788	42119	56016	56016					0.02129379814891763
VEELFERKY	9	Unmodified	_VEELFERKY_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-SECPEP	A375_MHC_IP_R1	1	607.2166137695312	2	606.816596	1211.61864	-0.11111	-6.7423E-05	-0.13078	-7.936E-05	-0.24189	-0.00014678	606.816467010362	42.841	1.0156	42.841	42.537	43.553	0					53	19	4	0	0	0	0.037765	1	14819	14819		125.04	77.289	1	33816000			57372	9951	41788	42119	56017	56017					0.02129379814891763
VEELFERKY	9	Unmodified	_VEELFERKY_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	A375_MHC_IP_R2	2	405.280029296875	3	404.880156	1211.61864	0.070872	2.8694E-05	-0.20061	-8.1222E-05	-0.12974	-5.2528E-05	404.88008485111965	42.01	2.5364	42.785	42.504	45.041	0.77451					136	49	5	0	0	0	0.0092755	2	15575	15575;15800		103.82	68.211	1	175220000			57373	9951	41788	42119	56018;56019	56018					0.02129379814891763
VEELFERKY	9	Unmodified	_VEELFERKY_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-SECPEP	A375_MHC_IP_R2	2	607.2163696289062	2	606.816596	1211.61864	-0.35108	-0.00021304	-0.1069	-6.487E-05	-0.45799	-0.00027791	606.816453454216	42.01	0.76601	42.785	42.555	43.321	0.77451					41	14	4	0	0	0	0.029774	1	15596	15596		132.38	86.68	1	33361000			57374	9951	41788	42119	56020	56020					0.02129379814891763
VEELIGQSHW	10	Unmodified	_VEELIGQSHW_					0	0	0			REV__ENST00000372427.5_1_1:43917099-43918100:-|nuORF	REV__ENST00000372427.5_1_1:43917099-43918100:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	599.6753540039062	2	599.29857	1196.58259	-0.61896	-0.00037094	0.65359	0.00039169	0.034622	2.0749E-05	599.2972108165511	62.462	0.55876	63.205	62.925	63.484	0.74263					15	10	3	0	0	0	0.91909	1	23588	23588		13.906	2.2658	1	1097700	+		57375	24066	41789	42120	56021	56021					-0.007840773619591346
VEELINYRQ	9	Unmodified	_VEELINYRQ_					0	0	0			REV__nc|ENSG00000007171|P35228-2|NOS2	REV__nc|ENSG00000007171|P35228-2|NOS2	MULTI-SECPEP	A375_MHC_IP_R1	1	581.6669311523438	2	582.306395	1162.59824	-0.34767	-0.00020245	0.83729	0.00048756	0.48962	0.00028511	582.3071449087794	47.029	0.56522	47.029	46.749	47.315	0					19	10	3	0	0	0	0.58271	1	16613	16613		20.454	0	1	3145700	+		57376	16150	41790	42121	56022	56022					0.023442091550805344
VEELSFREFA	10	Unmodified	_VEELSFREFA_					0	0	0			REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL	REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL	MULTI-MSMS	A375_MHC_IP_R2	2	614.2061157226562	2	613.806228	1225.5979	-0.5185	-0.00031826	0.24128	0.0001481	-0.27722	-0.00017016	613.8063123997989	42.042	0.40898	42.816	42.607	43.016	0.77451					16	7	3	0	0	0	0.5761	1	15674	15674		22.658	7.4096	1	2060600	+		57377	18069	41791	42122	56023	56023					-0.005872105647540593
VEELSFREFA	10	Unmodified	_VEELSFREFA_					0	0	0			REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL	REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL	MULTI-SECPEP	A375_MHC_IP_R2	2	409.9398498535156	3	409.539911	1225.5979	0.06835	2.7992E-05	0.78199	0.00032025	0.85034	0.00034825	409.53985657014834	42.044	0.86765	42.818	42.555	43.423	0.77451					35	16	3	0	0	0	0.75488	1	15659	15659		20.871	9.9722	1	8945200	+		57378	18069	41791	42122	56024	56024					-0.005872105647540593
VEELWRAQE	9	Unmodified	_VEELWRAQE_					0	0	0			REV__ENSG00000117139|ENST00000367265|KDM5B	REV__ENSG00000117139|ENST00000367265|KDM5B	MULTI-SECPEP	A375_MHC_IP_R1	1	386.6022033691406	3	387.196256	1158.56694	0.20462	7.9228E-05	-0.31165	-0.00012067	-0.10703	-4.1443E-05	387.5304419475818	31.895	0.30618	31.895	31.769	32.075	0					8	5	2	0	0	0	0.47368	1	10257	10257		24.991	13.496	1	1352200	+		57379	17995	41792	42123	56025	56025					-0.006003638790161858
VEELWRAQE	9	Unmodified	_VEELWRAQE_					0	0	0			REV__ENSG00000117139|ENST00000367265|KDM5B	REV__ENSG00000117139|ENST00000367265|KDM5B	MULTI-SECPEP	A375_MHC_IP_R2	2	386.6020202636719	3	387.196256	1158.56694	-0.17217	-6.6664E-05	-0.21703	-8.4033E-05	-0.3892	-0.0001507	387.19622846012044	31.311	0.25574	32.029	31.821	32.077	0.71857					7	4	2	0	0	0	0.47368	1	11035	11035		24.991	13.496	1	1011400	+		57380	17995	41792	42123	56026	56026					-0.006003638790161858
VEELYLEKY	9	Unmodified	_VEELYLEKY_					0	0	0			REV__ENSG00000170160|ENST00000399273|CCDC144A	REV__ENSG00000170160|ENST00000399273|CCDC144A	MULTI-SECPEP	A375_MHC_IP_R1	1	396.2483825683594	3	395.872778	1184.59651	-0.31153	-0.00012333	-1.8701	-0.00074032	-2.1816	-0.00086364	395.87297540772954	23.894	0.25367	23.894	23.737	23.991	0					7	4	2	0	0	0	0.60917	1	6694	6694		9.544	0	1	1528600	+		57381	20969	41793	42124	56027	56027					0.011591553464768367
VEEMEVDDFY	10	Unmodified	_VEEMEVDDFY_					0	0	0		nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	MSMS	A375_MHC_IP_R1	1	638.6566772460938	2	638.257919	1274.50128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.592	1	66.592	66.092	67.092	0								0	0	0	0.15158	1	24118	24118		14.838	0	1				57382	3561	41794	42125	56028	56028					-0.12498565906867043
VEEMEVDDFY	10	Unmodified	_VEEMEVDDFY_					0	0	0		nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	MSMS	A375_MHC_IP_R1	1	638.1356201171875	2	638.257919	1274.50128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.831	1	93.831	93.331	94.331	0								0	0	0	0.15308	1	34490	34490		10.824	3.5347	1				57383	3561	41794	42125	56029	56029					-0.12498565906867043
VEEMNNYY	8	Unmodified	_VEEMNNYY_					0	0	0			REV__ENSG00000184743|ENST00000398868|ATL3	REV__ENSG00000184743|ENST00000398868|ATL3	MSMS	A375_MHC_IP_R1	1	531.214599609375	2	531.215857	1060.41716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.044	1	88.044	87.544	88.544	0								0	0	0	0.16876	1	32315	32315		5.7604	0	1		+		57384	21838	41795	42126	56030	56030					-0.1106305221310322
VEEPATFIH	9	Unmodified	_VEEPATFIH_					0	0	0			REV__nc|ENSG00000269502|Q5HYR2-2|DMRTC1	REV__nc|ENSG00000269502|Q5HYR2-2|DMRTC1	MULTI-MSMS	A375_MHC_IP_R1	1	522.6793823242188	2	521.763832	1041.51311	-0.31801	-0.00016593	-0.63568	-0.00033168	-0.95369	-0.0004976	521.7634711468095	71.525	1.0613	71.525	71.159	72.22	0					72	20	5	0	0	0	0.32899	1	26141	26141		28.487	3.813	1	512910000	+		57385	27540	41796	42127	56031	56031					-0.00598536310712916
VEEPPQYQL	9	Unmodified	_VEEPPQYQL_					0	0	0			REV__nc|ENSG00000182173|Q7Z6J9-2|TSEN54	REV__nc|ENSG00000182173|Q7Z6J9-2|TSEN54	MULTI-SECPEP	A375_MHC_IP_R2	2	552.0025634765625	2	551.774396	1101.53424	-0.78433	-0.00043277	-1.2786	-0.00070551	-2.063	-0.0011383	551.7742508640374	77.822	0.51128	78.565	78.315	78.827	0.74294					14	9	2	0	0	0	0.73363	1	29477	29477		10.824	5.5933	1	1544100	+		57386	27392	41797	42128	56032	56032					-0.012465710018659593
VEEPTWSDPDV	11	Unmodified	_VEEPTWSDPDV_					0	0	0			REV__nc|ENSG00000117385|Q32P28-4|P3H1	REV__nc|ENSG00000117385|Q32P28-4|P3H1	MULTI-MSMS	A375_MHC_IP_R2	2	637.6819458007812	2	637.282783	1272.55101	-1.0113	-0.00064448	-0.2932	-0.00018685	-1.3045	-0.00083133	637.2824346131317	72.032	0.70852	72.766	72.465	73.174	0.73421					24	12	3	0	0	0	0.69231	1	27342	27342		16.149	0	1	3415600	+		57387	18005	41798	42129	56033	56033					-0.07436114906590774
VEEPTWSDPDV	11	Unmodified	_VEEPTWSDPDV_					0	0	0			REV__nc|ENSG00000117385|Q32P28-4|P3H1	REV__nc|ENSG00000117385|Q32P28-4|P3H1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	637.282783	1272.55101	-1.0113	-0.00064448	-0.2932	-0.00018685	-1.3045	-0.00083133	637.2824346131317	72.032	0.70852	72.766	72.465	73.174	0.73421	0.0099504	-0.00034395	NaN	16.149	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3415600	+		57388	18005	41798	42129							-0.07436114906590774
VEEQLKNVF	9	Unmodified	_VEEQLKNVF_					0	0	0			REV__ENSG00000204616|ENST00000376734|TRIM31	REV__ENSG00000204616|ENST00000376734|TRIM31	MULTI-SECPEP	A375_MHC_IP_R2	2	553.6985473632812	2	553.298039	1104.58152	-0.85286	-0.00047188	0.50667	0.00028034	-0.34618	-0.00019154	553.2983891821665	80.787	0.66384	81.532	81.112	81.776	0.74474					15	12	2	0	0	0	0.53748	1	30685	30685		18.146	0	1	1643700	+		57389	22531	41799	42130	56034	56034					0.033417082691585165
VEEQRITY	8	Unmodified	_VEEQRITY_					0	0	0		nc|ENSG00000152595|Q9NQ76-2|MEPE	nc|ENSG00000152595|Q9NQ76-2|MEPE	nc|ENSG00000152595|Q9NQ76-2|MEPE	MULTI-MSMS	A375_MHC_IP_R2	2	519.7023315429688	2	519.266739	1036.51892	-0.92561	-0.00048064	-1.7728	-0.00092057	-2.6984	-0.0014012	519.2667346933105	38.058	0.31008	38.832	38.636	38.946	0.77451					9	5	2	0	0	0	0.76184	1	13919	13919		17.113	0	1	1450700			57390	14686	41800	42131	56035	56035					0.002125622009543804
VEERNELGRYL	11	Unmodified	_VEERNELGRYL_					0	0	0			REV__ENSG00000173517|ENST00000682557|PEAK1	REV__ENSG00000173517|ENST00000682557|PEAK1	MSMS	A375_MHC_IP_R2	2	689.7612915039062	2	689.35969	1376.70483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.196	1	66.934	66.434	67.434	0.73811								0	0	0	0.16203	1	25088	25088		8.1555	0	1		+		57391	21227	41801	42132	56036	56036					0.031543396496317655
VEERPRRR	8	Unmodified	_VEERPRRR_					0	0	0			REV__ENSG00000171316|ENST00000423902|CHD7	REV__ENSG00000171316|ENST00000423902|CHD7	MULTI-MSMS	A375_MHC_IP_R1	1	549.7176513671875	2	549.317963	1096.62137	-0.80169	-0.00044038	0.56467	0.00031019	-0.23702	-0.0001302	549.3181418423698	133.59	0.45598	133.59	133.41	133.86	0					15	8	3	0	0	0	0.7766	1	51523	51523		7.2892	2.5332	1	4852300	+		57392	21060	41802	42133	56037	56037					0.0769269278309821
VEERPRRR	8	Unmodified	_VEERPRRR_					0	0	0			REV__ENSG00000171316|ENST00000423902|CHD7	REV__ENSG00000171316|ENST00000423902|CHD7	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	549.317963	1096.62137	-0.80169	-0.00044038	0.56467	0.00031019	-0.23702	-0.0001302	549.3181418423698	133.59	0.45598	133.59	133.41	133.86	0	-0.019968	0.00034702	NaN	7.2892	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4852300	+		57393	21060	41802	42133							0.0769269278309821
VEERSPKAQP	10	Unmodified	_VEERSPKAQP_					0	0	0		ENST00000312938.4_1_3:101395666-101396089:-|nuORF	ENST00000312938.4_1_3:101395666-101396089:-|nuORF	ENST00000312938.4_1_3:101395666-101396089:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	570.6764526367188	2	570.80402	1139.59349	-0.20649	-0.00011786	-0.79162	-0.00045186	-0.99811	-0.00056973	570.80368584202	48.104	0.75444	48.865	48.532	49.286	0.76128					43	14	4	0	0	0	0.87043	1	18103	18103		20.415	8.7742	1	12541000			57394	10639	41803	42134	56038	56038					0.029273250123196703
VEESTALLE	9	Unmodified	_VEESTALLE_					0	0	0		ENSG00000133256|ENST00000496514|PDE6B;nc|ENSG00000133256|P35913-2|PDE6B	ENSG00000133256|ENST00000496514|PDE6B	ENSG00000133256|ENST00000496514|PDE6B	MULTI-SECPEP	A375_MHC_IP_R1	1	494.974853515625	2	495.75313	989.491707	-0.2944	-0.00014595	0.60693	0.00030089	0.31253	0.00015494	495.7534206304298	20.308	0.50756	20.308	20.079	20.587	0					13	9	2	0	0	0	0.3607	1	5147	5147		42.095	0	1	992210			57395	4498	41804	42135	56039	56039					-0.0034596613010080546
VEETDFVLFH	10	Unmodified	_VEETDFVLFH_					0	0	0			REV__ENSG00000121904|ENST00000373381|CSMD2	REV__ENSG00000121904|ENST00000373381|CSMD2	MSMS	A375_MHC_IP_R1	1	618.5074462890625	2	618.300778	1234.587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.36	1	116.36	115.86	116.86	0								0	0	0	0.15308	1	42681	42681		10.824	0.75	1		+		57396	18178	41805	42136	56040	56040					-0.020906129390596107
VEETDMEDEFE	11	Unmodified	_VEETDMEDEFE_					0	0	0		ENSG00000011007|ENST00000613537|ELOA;nc|ENSG00000011007|Q14241-1|ELOA	ENSG00000011007|ENST00000613537|ELOA	ENSG00000011007|ENST00000613537|ELOA	MSMS	A375_MHC_IP_R1	1	686.7586059570312	2	686.75848	1371.50241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.7	1	121.7	121.2	122.2	0								0	0	0	0.16203	1	45218	45218		8.1555	2.8586	1				57397	988	41806	42137	56041	56041					-0.1684839632864623
VEEVHEFY	8	Unmodified	_VEEVHEFY_					0	0	0			REV__BHMT|p.A167V|1|0.28|ENSG00000145692|chr5:79121240-79121240|C/T|missense_variant	REV__BHMT|p.A167V|1|0.28|ENSG00000145692|chr5:79121240-79121240|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	526.6407470703125	2	526.24019	1050.46583	-0.45541	-0.00023965	-0.11613	-6.111E-05	-0.57153	-0.00030076	526.2403344971077	74.032	0.66143	74.769	74.348	75.009	0.73751					17	12	2	0	0	0	0.77603	1	28100	28100		9.3474	0	1	1066700	+		57398	15510	41807	42138	56042	56042					-0.05738815581707968
VEEVKILGK	9	Unmodified	_VEEVKILGK_					0	0	0		nc|ENSG00000138002|Q9UG01-3|IFT172;ENST00000511842.5_1_2:27693746-27712529:-|nuORF;ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172;ENST00000507184.5_1_2:27680991-27709067:-|nuORF;ENST00000476264.6_1_2:27700082-27706238:-|nuORF	nc|ENSG00000138002|Q9UG01-3|IFT172;ENSG00000138002|ENST00000260570|IFT172;ENST00000476264.6_1_2:27700082-27706238:-|nuORF	ENSG00000138002|ENST00000260570|IFT172	MULTI-MSMS	A375_MHC_IP_R1	1	1015.6327514648438	1	1014.61937	1013.6121	-0.025154	-2.5521E-05	0.99105	0.0010055	0.9659	0.00098002	1014.6200678407871	130.06	0.20374	130.06	129.95	130.16	0					8	3	3	0	0	0	0.41409	1	50008	50008		24.021	2.4836	1	30365000			57399	4942;14631;12430	41808	42139	56043	56043					0.10583486654206808
VEEVKILGK	9	Unmodified	_VEEVKILGK_					0	0	0		nc|ENSG00000138002|Q9UG01-3|IFT172;ENST00000511842.5_1_2:27693746-27712529:-|nuORF;ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172;ENST00000507184.5_1_2:27680991-27709067:-|nuORF;ENST00000476264.6_1_2:27700082-27706238:-|nuORF	nc|ENSG00000138002|Q9UG01-3|IFT172;ENSG00000138002|ENST00000260570|IFT172;ENST00000476264.6_1_2:27700082-27706238:-|nuORF	ENSG00000138002|ENST00000260570|IFT172	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	1014.61937	1013.6121	-0.0040427	-4.1018E-06	0.63945	0.00064879	0.6354	0.00064469	1014.619929359377	129.86	0.25337	130.07	129.94	130.2	0.2142	0.0039695	-0.0003277	NaN	24.021	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126290000			57400	4942;14631;12430	41808	42139							0.10583486654206808
VEEVTAHTIF	10	Unmodified	_VEEVTAHTIF_					0	0	0			REV__ENST00000546565.1_1_12:93277549-93277891:+|nuORF	REV__ENST00000546565.1_1_12:93277549-93277891:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	382.5927734375	3	382.532756	1144.57644	-0.034472	-1.3187E-05	1.3847	0.00052971	1.3503	0.00051652	382.867461213262	27.368	0.25487	28.046	27.843	28.098	0.67857					6	4	2	0	0	0	0.45919	1	9291	9291		26.021	0	1	1534500	+		57401	26002	41809	42140	56044	56044					0.00993404406517584
VEEVVKPWAS	10	Unmodified	_VEEVVKPWAS_					0	0	0		ENSG00000163825|ENST00000296142|RTP3	ENSG00000163825|ENST00000296142|RTP3	ENSG00000163825|ENST00000296142|RTP3	MULTI-SECPEP	A375_MHC_IP_R2	2	381.2763671875	3	381.873001	1142.59717	-0.10481	-4.0022E-05	-0.82341	-0.00031444	-0.92821	-0.00035446	381.87268383646585	31.101	0.66278	31.82	31.517	32.18	0.71857					38	12	4	0	0	0	0.78945	1	10914	10914		16.566	0	1	12727000			57402	6731	41810	42141	56045	56045					0.031579947861928304
VEEVVKPWAS	10	Unmodified	_VEEVVKPWAS_					0	0	0		ENSG00000163825|ENST00000296142|RTP3	ENSG00000163825|ENST00000296142|RTP3	ENSG00000163825|ENST00000296142|RTP3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	381.873001	1142.59717	0.29528	0.00011276	-1.1161	-0.00042622	-0.82084	-0.00031346	381.8726047089631	31.96	0.665	31.96	31.718	32.383	0	0.069782	-0.00015605	NaN	16.566	42	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12658000			57403	6731	41810	42141							0.031579947861928304
VEEWSGRLF	9	Unmodified	_VEEWSGRLF_					0	0	0			REV__MYO15A|p.S1187F|1|0.65|ENSG00000091536|chr17:18122360-18122360|C/T|missense_variant	REV__MYO15A|p.S1187F|1|0.65|ENSG00000091536|chr17:18122360-18122360|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	561.946044921875	2	561.782556	1121.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.07	1	100.07	99.569	100.57	0								0	0	0	0.15486	1	36772	36772		12.532	1.7076	1		+		57404	27065	41811	42142	56046	56046					-0.005354450451022785
VEEYRLTVKKS	11	Unmodified	_VEEYRLTVKKS_					0	0	0		CMYA5|p.E3765K|1|0.35|ENSG00000164309|chr5:79761843-79761843|G/A|missense_variant	CMYA5|p.E3765K|1|0.35|ENSG00000164309|chr5:79761843-79761843|G/A|missense_variant	CMYA5|p.E3765K|1|0.35|ENSG00000164309|chr5:79761843-79761843|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	676.6369018554688	2	676.382634	1350.75072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.71	1	106.71	106.21	107.21	0								0	0	0	0.16258	1	39167	39167		5.2969	2.0156	1				57405	543	41812	42143	56047	56047					0.08936984831848349
VEFESQTYY	9	Unmodified	_VEFESQTYY_					0	0	0		ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3	ENSG00000144357|ENST00000272793|UBR3	ENSG00000144357|ENST00000272793|UBR3	MULTI-SECPEP	A375_MHC_IP_R2	2	582.6952514648438	2	583.256037	1164.49752	-0.7153	-0.0004172	2.4674	0.0014391	1.7521	0.0010219	583.7598670349473	71.574	0.30331	72.308	72.111	72.414	0.73421					9	5	2	0	0	0	0.67483	1	27145	27145		20.454	16.509	1	2023700			57406	5479	41813	42144	56048	56048					-0.07814867618412791
VEFEWLRQFW	10	Unmodified	_VEFEWLRQFW_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MSMS	A375_MHC_IP_R2	2	480.47161865234375	3	480.575067	1438.70337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.673	1	34.425	33.925	34.925	0.75225								0	0	0	0.1562	1	12082	12082		0.69767	0.19171	1				57407	5180	41814	42145	56049	56049					0.0015675035149342875
VEFEYPFRL	9	Unmodified	_VEFEYPFRL_					0	0	0		ENSG00000102003|ENST00000263233|SYP	ENSG00000102003|ENST00000263233|SYP	ENSG00000102003|ENST00000263233|SYP	MULTI-SECPEP	A375_MHC_IP_R1	1	400.655517578125	3	400.541363	1198.60226	-0.27271	-0.00010923	0.73274	0.00029349	0.46003	0.00018426	400.54136277893974	63.82	0.50986	63.82	63.58	64.09	0					21	9	3	0	0	0	0.78753	1	23162	23162		2.4985	2.4985	1	2380100			57408	2347	41815	42146	56050	56050					0.010902986488190436
VEFFDLIQ	8	Unmodified	_VEFFDLIQ_					0	0	0		MATN4|p.S198F|1|0.17|ENSG00000124159|chr20:45304278-45304278|G/A|missense_variant	MATN4|p.S198F|1|0.17|ENSG00000124159|chr20:45304278-45304278|G/A|missense_variant	MATN4|p.S198F|1|0.17|ENSG00000124159|chr20:45304278-45304278|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	505.710693359375	2	505.7633	1009.51205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.479	1	65.219	64.719	65.719	0.74022								0	0	0	0.16876	1	24446	24446		11.64	0	1				57409	14356	41816	42147	56051	56051					0.0076724932038132465
VEFGENQEFTD	11	Unmodified	_VEFGENQEFTD_					0	0	0		nc|ENSG00000062650|Q7Z5K2-2|WAPL;ENSG00000062650|ENST00000298767|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	MSMS	A375_MHC_IP_R2	2	657.5599365234375	2	657.777864	1313.54118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.735	1	97.491	96.991	97.991	0.75586								0	0	0	0.16249	1	36723	36723		5.7319	2.1354	1				57410	14469	41817	42148	56052	56052					-0.1030530291195646
VEFLRENFK	9	Unmodified	_VEFLRENFK_					0	0	0		tr|U7SSG6|U7SSG6_FUSNUNH(3)-dependentNAD(+)synthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadEPE=3SV=1	tr|U7SSG6|U7SSG6_FUSNUNH(3)-dependentNAD(+)synthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadEPE=3SV=1	tr|U7SSG6|U7SSG6_FUSNUNH(3)-dependentNAD(+)synthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadEPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	591.1666870117188	2	591.319306	1180.62406	-0.22778	-0.00013469	0.59661	0.00035279	0.36883	0.0002181	591.3195770649623	62.737	0.46069	62.737	62.557	63.018	0					14	8	2	0	0	0	0.39388	1	22641	22641		32.305	10.559	1	1330800			57411	29632	41818	42149	56053	56053					0.04097103397361934
VEFQEAQAY	9	Unmodified	_VEFQEAQAY_					0	0	0		nc|ENSG00000108774|P51148-2|RAB5C;ENSG00000108774|ENST00000346213|RAB5C	nc|ENSG00000108774|P51148-2|RAB5C	nc|ENSG00000108774|P51148-2|RAB5C	MULTI-MSMS	A375_MHC_IP_R1	1	543.1500854492188	2	542.750921	1083.48729	-0.57996	-0.00031477	0.030551	1.6582E-05	-0.54941	-0.00029819	542.7505141259215	59.506	0.66014	59.506	59.041	59.701	0					24	12	3	0	0	0	0.1915	1	21414	21414		38.615	16.868	1	2178400			57412	2833	41819	42150	56054	56054					-0.051114305530063575
VEFRQTGY	8	Unmodified	_VEFRQTGY_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MSMS	A375_MHC_IP_R2	2	500.44866943359375	2	500.248349	998.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.987	1	55.737	55.237	56.237	0.75075								0	0	0	0.16876	1	20762	20762		10.183	0.83596	1				57413	2432	41820	42151	56055	56055					-0.01715689624938932
VEFSGEDNV	9	Unmodified	_VEFSGEDNV_					0	0	0		SCN11A|p.A934V|1|0.26|ENSG00000168356|chr3:38894567-38894567|G/A|missense_variant	SCN11A|p.A934V|1|0.26|ENSG00000168356|chr3:38894567-38894567|G/A|missense_variant	SCN11A|p.A934V|1|0.26|ENSG00000168356|chr3:38894567-38894567|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	498.20562744140625	2	498.219454	994.424355	-0.73705	-0.00036721	0.012922	6.4378E-06	-0.72413	-0.00036078	498.219441888039	36.357	1.5774	37.128	36.698	38.275	0.7709					92	30	5	0	0	0	0.5339	1	13551	13551		18.135	3.5533	1	333020000			57414	29114	41821	42152	56056	56056					-0.0730799634103505
VEFSTAWL	8	Unmodified	_VEFSTAWL_					0	0	0		ENST00000524741.1_1_8:11640652-11643779:+|nuORF;nc|ENSG00000154328|Q969S2-4|NEIL2;nc|ENSG00000154328|Q969S2-3|NEIL2;nc|ENSG00000154328|Q969S2-2|NEIL2;ENSG00000154328|ENST00000284503|NEIL2	ENST00000524741.1_1_8:11640652-11643779:+|nuORF	ENST00000524741.1_1_8:11640652-11643779:+|nuORF	MSMS	A375_MHC_IP_R2	2	476.6717834472656	2	476.742368	951.470183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.276	1	34.029	33.529	34.529	0.75225								0	0	0	0.16876	1	11906	11906		18.135	1.1927	1				57415	6081	41822	42153	56057	56057					-0.007493063681522472
VEFWERNMHQM	11	Unmodified	_VEFWERNMHQM_					0	0	0		ENSG00000157103|ENST00000287766|SLC6A1	ENSG00000157103|ENST00000287766|SLC6A1	ENSG00000157103|ENST00000287766|SLC6A1	MSMS	A375_MHC_IP_R1	1	753.8178100585938	2	753.834471	1505.65439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.927	1	81.927	81.427	82.427	0								0	0	0	0.16302	1	29947	29947		2.9952	0	1				57416	6227	41823	42154	56058	56058					-0.07821229271394259
VEFYKRFADPW	11	Unmodified	_VEFYKRFADPW_					0	0	0			REV__ENST00000452075.7_1_10:43047647-43047931:-|nuORF	REV__ENST00000452075.7_1_10:43047647-43047931:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	486.1631774902344	3	486.578588	1456.71394	-0.53302	-0.00025935	-0.66448	-0.00032332	-1.1975	-0.00058267	486.5782643610122	63.818	0.45689	64.558	64.292	64.749	0.74022					11	8	2	0	0	0	0.99681	1	24163	24163		4.4062	1.7749	1	2033800	+		57417	24754	41824	42155	56059	56059					0.0038473300594432658
VEFYLKNKYRI	11	Unmodified	_VEFYLKNKYRI_					0	0	0			REV__tr|U7SSX1|U7SSX1_FUSNUNADPH-dependentFMNreductase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01406PE=4SV=1	REV__tr|U7SSX1|U7SSX1_FUSNUNADPH-dependentFMNreductase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01406PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	492.0134582519531	3	491.613522	1471.81874	-0.22385	-0.00011005	-0.13416	-6.5957E-05	-0.35802	-0.00017601	491.61345049643563	79.242	0.76723	79.242	79.011	79.778	0					51	14	5	0	0	0	0.73439	1	28906	28906		4.7159	0.30977	1	28984000	+		57418	28450	41825	42156	56060	56060					0.1016985448250125
VEFYLKNKYRI	11	Unmodified	_VEFYLKNKYRI_					0	0	0			REV__tr|U7SSX1|U7SSX1_FUSNUNADPH-dependentFMNreductase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01406PE=4SV=1	REV__tr|U7SSX1|U7SSX1_FUSNUNADPH-dependentFMNreductase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01406PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	492.0134582519531	3	491.613522	1471.81874	-0.22385	-0.00011005	-0.13416	-6.5957E-05	-0.35802	-0.00017601	491.61345049643563	79.242	0.76723	79.242	79.011	79.778	0					51	14	5	0	0	0	0.99883	1	28906	28906		4.7159	0.30977	1	28984000	+		57419	28450	41825	42156	56061	56061					0.1016985448250125
VEGAGVKAW	9	Unmodified	_VEGAGVKAW_					0	0	0		ENST00000491911.5_1_9:140508423-140509541:+|nuORF;ENSG00000197070|ENST00000371421|ARRDC1	ENST00000491911.5_1_9:140508423-140509541:+|nuORF	ENST00000491911.5_1_9:140508423-140509541:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	459.14794921875	2	458.747985	915.481417	0.1704	7.8173E-05	-0.088027	-4.0382E-05	0.082378	3.7791E-05	458.7478475243177	38.861	0.45708	38.861	38.679	39.136	0					18	8	3	0	0	0	0.13208	1	13247	13247		57.722	27.085	1	6666000			57420	9112	41826	42157	56062	56062					0.020295157259852203
VEGAGVKAW	9	Unmodified	_VEGAGVKAW_					0	0	0		ENST00000491911.5_1_9:140508423-140509541:+|nuORF;ENSG00000197070|ENST00000371421|ARRDC1	ENST00000491911.5_1_9:140508423-140509541:+|nuORF	ENST00000491911.5_1_9:140508423-140509541:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	459.6493835449219	2	458.747985	915.481417	-0.61529	-0.00028226	0.154	7.0645E-05	-0.4613	-0.00021162	458.7480428031004	38.064	0.46227	38.839	38.636	39.098	0.77451					19	8	3	0	0	0	0.11629	1	13987	13987		47.749	19.262	1	5420400			57421	9112	41826	42157	56063	56063					0.020295157259852203
VEGAPCQHAAF	11	Unmodified	_VEGAPCQHAAF_					0	0	0			REV__ENST00000397420.7_1_11:838256-838586:+|nuORF	REV__ENST00000397420.7_1_11:838256-838586:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	564.7077026367188	2	565.258391	1128.50223	-0.50959	-0.00028805	2.2141	0.0012515	1.7045	0.00096349	565.2603091152166	65.386	0.61079	65.386	64.954	65.565	0					15	11	2	0	0	0	0.88813	1	23642	23642		19.362	3.5148	1	1108900	+		57422	24355	41827	42158	56064	56064					-0.05688261956674978
VEGAPKLP	8	Unmodified	_VEGAPKLP_					0	0	0			REV__MAP4K4|p.S953Kfs*30|1|0.04|ENSG00000071054|chr2:101877028-101877029|-/AGTGGCCTGATGCTGCTGGACAGAA|frameshift_variant	REV__MAP4K4|p.S953Kfs*30|1|0.04|ENSG00000071054|chr2:101877028-101877029|-/AGTGGCCTGATGCTGCTGGACAGAA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	406.2615051269531	2	405.739628	809.464704	-0.046497	-1.8866E-05	0.16923	6.8664E-05	0.12273	4.9798E-05	405.739547948614	74.703	0.96471	75.441	74.907	75.872	0.73752					31	18	2	0	0	0	0.7779	1	28154	28154		2.5775	0	1	12233000	+		57423	16584	41828	42159	56065	56065					0.05235014840047825
VEGGCSHLGQ	10	Unmodified	_VEGGCSHLGQ_					0	0	0		ENST00000470167.1_1_2:189839215-189849763:+|nuORF;nc|ENSG00000168542|P02461-2|COL3A1;COL3A1|p.S1250Lfs*4|1|0.04|ENSG00000168542|chr2:189009145-189009146|-/CTTC|frameshift_variant;COL3A1|p.P1251Kfs*8|1|0.04|ENSG00000168542|chr2:189009146-189009147|-/GCAAGGCCGTGCACCCCTG|frameshift_variant;ENSG00000168542|ENST00000304636|COL3A1	ENST00000470167.1_1_2:189839215-189849763:+|nuORF	ENST00000470167.1_1_2:189839215-189849763:+|nuORF	MSMS	A375_MHC_IP_R1	1	493.66070556640625	2	493.721641	985.428729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.162	1	65.162	64.662	65.662	0								0	0	0	0.15207	1	23587	23587		13.906	3.0821	1				57424	557	41829	42160	56066	56066					-0.06456810399117785
VEGGLVATAY	10	Unmodified	_VEGGLVATAY_					0	0	0			REV__tr|U7SZ69|U7SZ69_FUSNUChaperoneproteinDnaJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaJPE=3SV=1	REV__tr|U7SZ69|U7SZ69_FUSNUChaperoneproteinDnaJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaJPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	490.6399841308594	2	490.258382	978.502212	-0.3634	-0.00017816	1.206	0.00059125	0.84259	0.00041309	490.259182709174	53.367	0.60819	53.367	53.048	53.656	0					19	11	3	0	0	0	0.72086	1	19017	19017		30.637	7.9003	1	1795300	+		57425	28639	41830	42161	56067	56067					0.012100613149868877
VEGGLVATAY	10	Unmodified	_VEGGLVATAY_					0	0	0			REV__tr|U7SZ69|U7SZ69_FUSNUChaperoneproteinDnaJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaJPE=3SV=1	REV__tr|U7SZ69|U7SZ69_FUSNUChaperoneproteinDnaJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaJPE=3SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	490.258382	978.502212	-0.96535	-0.00047327	1.8531	0.0009085	0.88776	0.00043523	490.25915453691954	52.373	0.45403	53.125	52.932	53.386	0.75225	-0.12097	0.00018083	NaN	30.637	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1902700	+		57426	28639	41830	42161							0.012100613149868877
VEGHRLLVL	9	Unmodified	_VEGHRLLVL_					0	0	0		ENST00000392062.6_1_2:227700745-227704239:+|nuORF;ENST00000539613.5_1_2:227700803-227704239:+|nuORF	ENST00000392062.6_1_2:227700745-227704239:+|nuORF	ENST00000392062.6_1_2:227700745-227704239:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	518.1243286132812	2	518.319109	1034.62366	-0.68316	-0.00035409	0.024119	1.2501E-05	-0.65904	-0.00034159	518.3189746212219	25.805	0.9638	25.805	25.154	26.118	0					25	18	2	0	0	0	0.71541	1	7329	7329		11.64	4.9171	1	1401700			57427	11414	41831	42162	56068	56068					0.10773728468188892
VEGKEKPGAL	10	Unmodified	_VEGKEKPGAL_					0	0	0		KDM3A|p.I1164V|1|0.35|ENSG00000115548|chr2:86489576-86489576|A/G|missense_variant	KDM3A|p.I1164V|1|0.35|ENSG00000115548|chr2:86489576-86489576|A/G|missense_variant	KDM3A|p.I1164V|1|0.35|ENSG00000115548|chr2:86489576-86489576|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	514.258056640625	2	514.292756	1026.57096	-0.57545	-0.00029595	-2.6243	-0.0013497	-3.1998	-0.0016456	514.29220792	80.079	0.40895	80.079	79.778	80.187	0					18	7	3	0	0	0	0.8125	1	29147	29147		13.042	3.6593	1	882510			57428	14203	41832	42163	56069	56069					0.058737256147196604
VEGKHPPEKL	10	Unmodified	_VEGKHPPEKL_					0	0	0		ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	MULTI-SECPEP	A375_MHC_IP_R1	1	378.9486389160156	3	378.548629	1132.62406	0.49445	0.00018717	-0.37878	-0.00014339	0.11567	4.3786E-05	378.54843701583	20.767	0.46084	20.767	20.485	20.946	0					12	8	2	0	0	0	0.51493	1	5389	5389		32.898	0.86029	1	2673900			57429	6996	41833	42164	56070	56070					0.06305103397380662
VEGLMTTVHS	10	Unmodified	_VEGLMTTVHS_					0	0	0		ENSG00000105679|ENST00000222286|GAPDHS	ENSG00000105679|ENST00000222286|GAPDHS	ENSG00000105679|ENST00000222286|GAPDHS	MSMS	A375_MHC_IP_R2	2	358.4382629394531	3	358.514708	1072.5223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.12	1	22.739	22.239	23.239	0.61932								0	0	0	0.15207	1	7008	7008		8.4443	1.0152	1				57430	2630	41834	42165	56071	56071					-0.011065110167010062
VEGLQKQPR	9	Unmodified	_VEGLQKQPR_					0	0	0		ENSG00000166261|ENST00000530393|ZNF202	ENSG00000166261|ENST00000530393|ZNF202	ENSG00000166261|ENST00000530393|ZNF202	MSMS	A375_MHC_IP_R2	2	527.7056274414062	2	527.803823	1053.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.082	1	81.827	81.327	82.327	0.74474								0	0	0	0.15486	1	30789	30789		11.64	0	1				57431	7050	41835	42166	56072	56072					0.06843950083134587
VEGPSKAEI	9	Unmodified	_VEGPSKAEI_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000474358.5_1_X:153580213-153581146:-|nuORF;nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000196924|P21333-2|FLNA;nc|ENSG00000128591|Q14315-2|FLNC;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;nc|ENSG00000136068|O75369-6|FLNB	nc|ENSG00000196924|P21333-2|FLNA	MULTI-SECPEP	A375_MHC_IP_R1	1	465.6500549316406	2	465.250557	928.486562	-0.32505	-0.00015123	-0.23647	-0.00011002	-0.56152	-0.00026125	465.25028593909485	27.283	0.95734	27.283	26.828	27.786	0					30	18	3	0	0	0	0.37663	1	8243	8243		43.772	3.8227	1	9146500			57432	9093;4149;12651;4749	41836	42167	56073	56073					0.01945774797957256
VEGQGFEY	8	Unmodified	_VEGQGFEY_					0	0	0		ENSG00000196407|ENST00000368817|THEM5	ENSG00000196407|ENST00000368817|THEM5	ENSG00000196407|ENST00000368817|THEM5	MULTI-MSMS	A375_MHC_IP_R1	1	465.1207275390625	2	464.705983	927.397412	-0.24554	-0.0001141	1.3856	0.00064391	1.1401	0.00052981	464.70697135486836	95.998	0.91193	95.998	95.515	96.427	0					27	17	2	0	0	0	0.74466	1	35349	35349		21.747	3.6117	1	2112700			57433	9035	41837	42168	56074	56074					-0.06919060161578727
VEGQGFEY	8	Unmodified	_VEGQGFEY_					0	0	0		ENSG00000196407|ENST00000368817|THEM5	ENSG00000196407|ENST00000368817|THEM5	ENSG00000196407|ENST00000368817|THEM5	MULTI-MSMS	A375_MHC_IP_R2	2	465.1069030761719	2	464.705983	927.397412	-0.36261	-0.00016851	1.2229	0.00056828	0.86027	0.00039977	464.7071977233885	95.024	0.76301	95.774	95.432	96.195	0.75045					27	14	3	0	0	0	0.74466	1	36177	36177		21.747	1.293	1	3077200			57434	9035	41837	42168	56075	56075					-0.06919060161578727
VEGTEPENV	9	Unmodified	_VEGTEPENV_					0	0	0			REV__nc|ENSG00000204334|A1L162|ERICH2	REV__nc|ENSG00000204334|A1L162|ERICH2	MULTI-SECPEP	A375_MHC_IP_R2	2	486.633056640625	2	487.227279	972.440005	-0.7541	-0.00036742	2.2781	0.00111	1.524	0.00074255	487.22855070868206	55.876	0.25654	56.626	56.54	56.796	0.75015					6	4	2	0	0	0	0.76187	1	21122	21122		7.2892	1.5288	1	834900	+		57435	27454	41838	42169	56076	56076					-0.047317098239886946
VEGTIPKLF	9	Unmodified	_VEGTIPKLF_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.6945495605469	2	502.294768	1002.57498	-0.40177	-0.00020181	-0.10213	-5.1297E-05	-0.50389	-0.0002531	502.2946863104681	87.622	0.50777	87.622	87.39	87.898	0					19	9	3	0	0	0	0.53748	1	32163	32163		24.021	13.197	1	1740600			57436	8836	41839	42170	56077	56077					0.07379815108424737
VEGTIPKLF	9	Unmodified	_VEGTIPKLF_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	502.69500732421875	2	502.294768	1002.57498	-0.4944	-0.00024834	0.67375	0.00033842	0.17935	9.0085E-05	502.29511635002996	86.801	0.50739	87.534	87.255	87.762	0.733					16	9	2	0	0	0	0.4261	1	33016	33016		24.021	9.1823	1	2648400			57437	8836	41839	42170	56078	56078					0.07379815108424737
VEGTRTTTL	9	Unmodified	_VEGTRTTTL_					0	0	0			REV__nc|ENSG00000277363|Q9C0H9-2|SRCIN1	REV__nc|ENSG00000277363|Q9C0H9-2|SRCIN1	MULTI-MSMS	A375_MHC_IP_R1	1	489.6669616699219	2	489.266739	976.518924	-0.49436	-0.00024187	1.0074	0.00049289	0.51306	0.00025102	489.2671936726642	86.119	0.30305	86.119	85.971	86.274	0					8	5	2	0	0	0	0.58047	1	31596	31596		15.847	15.847	1	1702600	+		57438	22971	41840	42171	56079	56079					0.029725622009550534
VEGTSNPNLY	10	Unmodified	_VEGTSNPNLY_					0	0	0		nc|ENSG00000237254|A0A0K0K1B3|TRBV30	nc|ENSG00000237254|A0A0K0K1B3|TRBV30	nc|ENSG00000237254|A0A0K0K1B3|TRBV30	MULTI-MSMS	A375_MHC_IP_R1	1	547.1895751953125	2	547.261653	1092.50875	-0.31889	-0.00017452	-0.29421	-0.00016101	-0.6131	-0.00033553	547.261178964129	47.945	0.35352	47.945	47.768	48.122	0					10	6	2	0	0	0	0.6502	1	16861	16861		17.113	1.8644	1	1206400			57439	14910	41841	42172	56080	56080					-0.03380045524272646
VEGTWCGSE	9	Unmodified	_VEGTWCGSE_					0	0	0		ENST00000587947.5_1_19:38880764-38880967:+|nuORF	ENST00000587947.5_1_19:38880764-38880967:+|nuORF	ENST00000587947.5_1_19:38880764-38880967:+|nuORF	MSMS	A375_MHC_IP_R1	1	484.1494445800781	2	484.194925	966.375297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.8	1	108.8	108.3	109.3	0								0	0	0	0.15486	1	39910	39910		11.64	1.4569	1				57440	13752	41842	42173	56081	56081					-0.10923607901634114
VEGVDIFFF	9	Unmodified	_VEGVDIFFF_					0	0	0		ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9	ENSG00000177200|ENST00000447540|CHD9	ENSG00000177200|ENST00000447540|CHD9	MULTI-SECPEP	A375_MHC_IP_R2	2	358.9292297363281	3	358.183176	1071.5277	-0.23994	-8.5944E-05	-0.52553	-0.00018824	-0.76547	-0.00027418	358.1828200931239	31.383	0.35772	32.102	31.77	32.128	0.71857					10	6	2	0	0	0	0.69504	1	11053	11053		8.1555	5.0833	1	795070			57441	8069	41843	42174	56082	56082					-0.0052046416258235695
VEHCLHMFD	9	Unmodified	_VEHCLHMFD_					0	0	0		nc|ENSG00000136297|Q8IY49-3|MMD2;ENSG00000136297|ENST00000401401|MMD2;nc|ENSG00000136297|Q8IY49|MMD2	nc|ENSG00000136297|Q8IY49-3|MMD2	nc|ENSG00000136297|Q8IY49-3|MMD2	MSMS	A375_MHC_IP_R1	1	565.6834106445312	2	565.741519	1129.46849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.237	1	84.237	83.737	84.737	0								0	0	0	0.15283	1	30848	30848		16.942	4.4107	1				57442	4780	41844	42175	56083	56083					-0.09107006720046229
VEHPSDLIV	9	Unmodified	_VEHPSDLIV_					0	0	0		ROBO1|p.N1089Sfs*2|1|0.06|ENSG00000169855|chr3:78635881-78635882|-/ATGA|frameshift_variant;ROBO1|p.N1088Sfs*50|1|0.03|ENSG00000169855|chr3:78635883-78635884|-/AGTGGCAGTGTATTGTGAAAGC|frameshift_variant;nc|ENSG00000169855|Q9Y6N7-6|ROBO1;nc|ENSG00000169855|Q9Y6N7-5|ROBO1;nc|ENSG00000169855|Q9Y6N7-4|ROBO1;nc|ENSG00000169855|Q9Y6N7-3|ROBO1;ENSG00000169855|ENST00000464233|ROBO1;nc|ENSG00000169855|Q9Y6N7-2|ROBO1	ROBO1|p.N1089Sfs*2|1|0.06|ENSG00000169855|chr3:78635881-78635882|-/ATGA|frameshift_variant	ROBO1|p.N1089Sfs*2|1|0.06|ENSG00000169855|chr3:78635881-78635882|-/ATGA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	504.6830139160156	2	504.771657	1007.52876	-0.61196	-0.0003089	-1.515	-0.00076474	-2.127	-0.0010736	504.7705220156232	92.961	0.40369	93.7	93.495	93.899	0.73902					12	7	2	0	0	0	0.65246	1	35411	35411		10.824	0	1	531140			57443	7442	41845	42176	56084	56084					0.02529750206326753
VEHREWIGLG	10	Unmodified	_VEHREWIGLG_					0	0	0			REV__nc|ENSG00000131067|Q9UJ14-4|GGT7	REV__nc|ENSG00000131067|Q9UJ14-4|GGT7	MULTI-SECPEP	A375_MHC_IP_R2	2	398.9798583984375	3	399.212128	1194.61456	-0.066952	-2.6728E-05	-0.75891	-0.00030296	-0.82586	-0.00032969	399.21192295573707	44.421	0.35477	45.19	45.035	45.39	0.76909					8	6	2	0	0	0	0.93873	1	16525	16525		5.0475	0	1	1559600	+		57444	27225	41846	42177	56085	56085					0.025033351118281644
VEHRNWGY	8	Unmodified	_VEHRNWGY_					0	0	0			REV__ENST00000564987.1_1_16:23541198-23555881:-|nuORF	REV__ENST00000564987.1_1_16:23541198-23555881:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	530.1213989257812	2	530.75159	1059.48863	-0.77594	-0.00041183	-3.0916	-0.0016409	-3.8676	-0.0020527	530.749836778004	35.938	0.51064	36.701	36.435	36.946	0.76338					10	7	2	0	0	0	0.88799	1	13155	13155		20.871	8.3397	1	2000800	+		57445	17273	41847	42178	56086	56086					-0.038737516735636746
VEHRRVEAR	9	Unmodified	_VEHRRVEAR_					0	0	0			REV__nc|ENSG00000135439|Q99490-2|AGAP2	REV__nc|ENSG00000135439|Q99490-2|AGAP2	MULTI-SECPEP	A375_MHC_IP_R2	2	383.9668884277344	3	384.551256	1150.63194	-0.18622	-7.161E-05	-2.6602	-0.001023	-2.8464	-0.0010946	384.8848486458391	32.836	0.5591	33.573	33.317	33.876	0.73691					15	10	2	0	0	0	0.74597	1	11623	11623		16.566	7.0219	1	1061500	+		57446	27241	41848	42179	56087	56087					0.06264675437500955
VEHSSQLAW	9	Unmodified	_VEHSSQLAW_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	A375_MHC_IP_R1	1	528.6630249023438	2	528.759081	1055.50361	-0.52999	-0.00028024	1.1255	0.00059513	0.59554	0.0003149	528.759645843862	61.665	0.51088	61.665	61.432	61.943	0					19	9	3	0	0	0	0.35581	1	22329	22329		26.884	3.0939	1	6772500	+		57447	21320	41849	42180	56088	56088					-0.02192304596246686
VEHTPDGVKW	10	Unmodified	_VEHTPDGVKW_					0	0	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R1	1	390.2647705078125	3	389.864617	1166.57202	0.11328	4.4164E-05	0.2055	8.0117E-05	0.31878	0.00012428	389.86467000399534	34.323	0.86077	34.323	33.898	34.759	0					50	16	5	0	0	0	0.010963	1	11262	11262		96.034	81.816	1	99483000			57448	2241	41850	42181	56089	56089					-0.004600600163712443
VEHTPDGVKW	10	Unmodified	_VEHTPDGVKW_					0	0	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R1	1	583.6901245117188	2	584.293288	1166.57202	-0.30494	-0.00017818	-0.086819	-5.0728E-05	-0.39176	-0.0002289	584.2932599899509	34.312	0.65636	34.312	34.052	34.708	0					25	12	3	0	0	0	0.0042118	2	11308	11308;11327		136.39	92.534	1	11883000			57449	2241	41850	42181	56090;56091	56090					-0.004600600163712443
VEHTPDGVKW	10	Unmodified	_VEHTPDGVKW_					0	0	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R2	2	390.26470947265625	3	389.864617	1166.57202	-0.64663	-0.0002521	0.47209	0.00018405	-0.17455	-6.805E-05	389.86477536803113	33.571	0.91185	34.323	33.891	34.803	0.75225					50	17	4	0	0	0	0.011232	1	11987	11987		109.15	94.189	1	88370000			57450	2241	41850	42181	56092	56092					-0.004600600163712443
VEHTPDGVKW	10	Unmodified	_VEHTPDGVKW_					0	0	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	A375_MHC_IP_R2	2	583.6900024414062	2	584.293288	1166.57202	-0.93786	-0.00054799	0.14126	8.2536E-05	-0.7966	-0.00046545	584.2933670213882	33.571	0.6594	34.323	34.043	34.702	0.75225					28	12	3	0	0	0	0.0065146	1	12044	12044		103.82	69.422	1	12089000			57451	2241	41850	42181	56093	56093					-0.004600600163712443
VEHYNVHNLY	10	Unmodified	_VEHYNVHNLY_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2;ENST00000496337.1_1_7:141870985-141908039:+|nuORF	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-MSMS	A375_MHC_IP_R1	1	645.233642578125	2	644.309469	1286.60439	-0.19804	-0.0001276	-1.0445	-0.00067299	-1.2425	-0.00080059	644.3086123979502	108.44	0.76109	108.44	108.15	108.92	0					30	14	3	0	0	0	0.71118	1	39699	39699		7.2892	0.56607	1	2650800			57452	9912	41851	42182	56094	56094					-0.02745272613378802
VEIAVFLELI	10	Unmodified	_VEIAVFLELI_					0	0	0		ENST00000458151.1_1_1:53704720-53704837:+|nuORF	ENST00000458151.1_1_1:53704720-53704837:+|nuORF	ENST00000458151.1_1_1:53704720-53704837:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	573.742919921875	2	573.344458	1144.67436	-0.17352	-9.9489E-05	-3.954	-0.002267	-4.1275	-0.0023665	573.3418024688469	88.657	0.45587	89.389	89.128	89.584	0.7318					13	8	2	0	0	0	0.90853	1	33774	33774		10.824	0	1	2158800			57453	12146	41852	42183	56095	56095					0.10781213002519507
VEICIHHM	8	Unmodified	_VEICIHHM_					0	0	0			REV__ENSG00000124370|ENST00000244217|MCEE	REV__ENSG00000124370|ENST00000244217|MCEE	MSMS	A375_MHC_IP_R1	1	491.1501159667969	2	491.235873	980.457192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.296	1	77.296	76.796	77.796	0								0	0	0	0.16876	1	28195	28195		13.508	3.3245	1		+		57454	18298	41853	42184	56096	56096					-0.03381784023531509
VEICIHHM	8	Unmodified	_VEICIHHM_					0	0	0			REV__ENSG00000124370|ENST00000244217|MCEE	REV__ENSG00000124370|ENST00000244217|MCEE	MSMS	A375_MHC_IP_R1	1	491.13201904296875	2	491.235873	980.457192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.391	1	77.391	76.891	77.891	0								0	0	0	0.16876	1	28232	28232		13.508	0.97634	1		+		57455	18298	41853	42184	56097	56097					-0.03381784023531509
VEIERKVRV	9	Unmodified	_VEIERKVRV_					0	0	0		ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	MSMS	A375_MHC_IP_R2	2	376.58917236328125	3	376.568024	1126.68224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.842	1	40.617	40.117	41.117	0.77451								0	0	0	0.15486	1	14730	14730		6.6304	0.43853	1				57456	9802	41854	42185	56098	56098					0.12396785042642477
VEIERQKKK	9	Unmodified	_VEIERQKKK_					0	0	0			REV__nc|ENSG00000126216|Q96CW5-2|TUBGCP3	REV__nc|ENSG00000126216|Q96CW5-2|TUBGCP3	MSMS	A375_MHC_IP_R2	2	386.6020202636719	3	386.571545	1156.69281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.235	1	31.954	31.454	32.454	0.71857								0	0	0	0.15486	1	11035	11035		7.1017	1.3183	1		+		57457	27207	41855	42186	56099	56099					0.12072767697077325
VEIEYVEKY	9	Unmodified	_VEIEYVEKY_					0	0	0		ENSG00000138442|ENST00000261015|WDR12;ENST00000478869.1_1_2:203760778-203765795:-|nuORF	ENSG00000138442|ENST00000261015|WDR12	ENSG00000138442|ENST00000261015|WDR12	MULTI-SECPEP	A375_MHC_IP_R1	1	586.2247924804688	2	586.297704	1170.58086	-0.26876	-0.00015757	-0.019586	-1.1483E-05	-0.28834	-0.00016905	586.2975762819661	59.372	0.40645	59.372	59.092	59.498	0					11	7	2	0	0	0	0.23313	1	21323	21323		49.527	10.912	1	3167500			57458	4995	41856	42187	56100	56100					0.0023886882945589605
VEIEYVEKY	9	Unmodified	_VEIEYVEKY_					0	0	0		ENSG00000138442|ENST00000261015|WDR12;ENST00000478869.1_1_2:203760778-203765795:-|nuORF	ENSG00000138442|ENST00000261015|WDR12	ENSG00000138442|ENST00000261015|WDR12	MULTI-SECPEP	A375_MHC_IP_R2	2	585.7245483398438	2	586.297704	1170.58086	-0.88422	-0.00051842	-0.077808	-4.5618E-05	-0.96203	-0.00056403	586.2976616390459	58.665	0.45654	59.414	59.237	59.693	0.74894					14	8	2	0	0	0	0.54812	1	22176	22176		24.991	0	1	2390000			57459	4995	41856	42187	56101	56101					0.0023886882945589605
VEIFELNQMS	10	Unmodified	_VEIFELNQMS_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	A375_MHC_IP_R2	2	403.2749328613281	3	403.865518	1208.57472	0.073097	2.9521E-05	1.9196	0.00077526	1.9927	0.00080478	403.8663457587155	42.133	0.25605	42.906	42.809	43.065	0.7724					5	4	2	0	0	0	0.91909	1	15712	15712		3.0723	0	1	898950	+		57460	21320	41857	42188	56102	56102					-0.02121972673739947
VEIFQLLKIKE	11	Unmodified	_VEIFQLLKIKE_					0	0	0		ENSG00000240720|ENST00000458448|LRRD1	ENSG00000240720|ENST00000458448|LRRD1	ENSG00000240720|ENST00000458448|LRRD1	MSMS	A375_MHC_IP_R2	2	680.1737060546875	2	680.415946	1358.81734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.8	1	111.54	111.04	112.04	0.73692								0	0	0	0.16334	1	41790	41790		1.3295	0	1				57461	9777	41858	42189	56103	56103					0.15228220393737502
VEIHLIFLL	9	Unmodified	_VEIHLIFLL_					0	0	0		ENST00000505253.1_1_5:10413496-10422048:+|nuORF	ENST00000505253.1_1_5:10413496-10422048:+|nuORF	ENST00000505253.1_1_5:10413496-10422048:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	549.173828125	2	548.841885	1095.66922	-0.7312	-0.00040131	-3.3882	-0.0018596	-4.1194	-0.0022609	548.8405163044474	78.546	0.20188	79.291	79.185	79.387	0.74473					5	3	2	0	0	0	0.71541	1	29801	29801		11.64	0	1	632180			57462	12839	41859	42190	56104	56104					0.12520953930561518
VEIIRPKDI	9	Unmodified	_VEIIRPKDI_					0	0	0			REV__nc|ENSG00000086475|P49903-2|SEPHS1	REV__nc|ENSG00000086475|P49903-2|SEPHS1	MULTI-SECPEP	A375_MHC_IP_R2	2	541.1710815429688	2	541.832049	1081.64954	-0.72472	-0.00039268	0.1386	7.5095E-05	-0.58613	-0.00031758	541.8320643485977	68.748	1.2153	69.483	68.918	70.133	0.73511					61	23	4	0	0	0	0.090157	1	26025	26025		56.177	0	1	18050000	+		57463	16854	41860	42191	56105	56105					0.1119857791979939
VEIKKQIAAK	10	Unmodified	_VEIKKQIAAK_					0	0	0		SCN10A|p.E25K|1|0.32|ENSG00000185313|chr3:38793938-38793938|C/T|missense_variant	SCN10A|p.E25K|1|0.32|ENSG00000185313|chr3:38793938-38793938|C/T|missense_variant	SCN10A|p.E25K|1|0.32|ENSG00000185313|chr3:38793938-38793938|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	564.7604370117188	2	564.360973	1126.70739	-0.29889	-0.00016868	-0.18174	-0.00010257	-0.48063	-0.00027125	564.3605596454858	147.26	0.24243	147.28	147.18	147.42	0.019897					51	32	2	0	0	0	0.72658	1	57270	57270		0.40072	0	1	206460			57464	29113	41861	42192	56106	56106					0.14910839845219925
VEIKKQIAAK	10	Unmodified	_VEIKKQIAAK_					0	0	0		SCN10A|p.E25K|1|0.32|ENSG00000185313|chr3:38793938-38793938|C/T|missense_variant	SCN10A|p.E25K|1|0.32|ENSG00000185313|chr3:38793938-38793938|C/T|missense_variant	SCN10A|p.E25K|1|0.32|ENSG00000185313|chr3:38793938-38793938|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	564.360973	1126.70739	-0.77005	-0.00043459	-0.086876	-4.9029E-05	-0.85693	-0.00048362	564.3606883998514	147.24	0.27544	147.24	147.15	147.42	0	-0.018854	5.2094E-05	NaN	0.40072	64	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	392100			57465	29113	41861	42192							0.14910839845219925
VEIKKQIAAK	10	Unmodified	_VEIKKQIAAK_					0	0	0		SCN10A|p.E25K|1|0.32|ENSG00000185313|chr3:38793938-38793938|C/T|missense_variant	SCN10A|p.E25K|1|0.32|ENSG00000185313|chr3:38793938-38793938|C/T|missense_variant	SCN10A|p.E25K|1|0.32|ENSG00000185313|chr3:38793938-38793938|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	564.360973	1126.70739	-0.29889	-0.00016868	-0.18174	-0.00010257	-0.48063	-0.00027125	564.3605596454858	147.26	0.24243	147.28	147.18	147.42	0.019897	0.018854	-5.4979E-05	NaN	0.40072	51	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206460			57466	29113	41861	42192							0.14910839845219925
VEILFCLTHRY	11	Unmodified	_VEILFCLTHRY_					0	0	0			REV__ENST00000476134.1_1_10:49609691-49618268:+|nuORF	REV__ENST00000476134.1_1_10:49609691-49618268:+|nuORF	MSMS	A375_MHC_IP_R1	1	697.357421875	2	697.368472	1392.72239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.008	1	99.008	98.508	99.508	0								0	0	0	0.16191	1	36373	36373		8.7454	3.0136	1		+		57467	25178	41862	42193	56107	56107					0.04173963650919177
VEILFCLTHRY	11	Unmodified	_VEILFCLTHRY_					0	0	0			REV__ENST00000476134.1_1_10:49609691-49618268:+|nuORF	REV__ENST00000476134.1_1_10:49609691-49618268:+|nuORF	MSMS	A375_MHC_IP_R2	2	697.7686157226562	2	697.368472	1392.72239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.24	1	105	104.5	105.5	0.76308								0	0	0	0.16258	1	39444	39444		5.2969	0.39987	1		+		57468	25178	41862	42193	56108	56108					0.04173963650919177
VEILQEREY	9	Unmodified	_VEILQEREY_					0	0	0		SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant;nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4	SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant;nc|ENSG00000127616|P51532-5|SMARCA4	SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	590.2058715820312	2	589.806228	1177.5979	-0.83995	-0.00049541	0.23765	0.00014017	-0.6023	-0.00035524	589.8064247044948	51.746	0.40718	52.499	52.27	52.677	0.75225					10	7	2	0	0	0	0.69179	1	19523	19523		21.59	10.095	1	1828000			57469	1714;4100	41863	42194	56109	56109					0.016207894352419316
VEINIDHKF	9	Unmodified	_VEINIDHKF_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	A375_MHC_IP_R1	1	558.1981811523438	2	557.798206	1113.58186	-0.024797	-1.3831E-05	-0.5679	-0.00031677	-0.5927	-0.00033061	557.797930510481	49	0.70954	49	48.729	49.439	0					44	13	5	0	0	0	0.018709	1	17296	17296		121.5	55.047	1	31285000			57470	3330	41864	42195	56110	56110					0.02961127988987755
VEINIDHKF	9	Unmodified	_VEINIDHKF_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	A375_MHC_IP_R2	2	372.93524169921875	3	372.201229	1113.58186	0.52367	0.00019491	-0.45593	-0.0001697	0.067741	2.5213E-05	372.20107128151193	48.096	1.8713	48.858	48.48	50.351	0.76128					90	36	4	0	0	0	0.048392	1	18036	18036		64.927	32.889	1	91870000			57471	3330	41864	42195	56111	56111					0.02961127988987755
VEINIDHKF	9	Unmodified	_VEINIDHKF_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	A375_MHC_IP_R2	2	558.197998046875	2	557.798206	1113.58186	-0.66047	-0.00036841	-0.039312	-2.1928E-05	-0.69978	-0.00039033	557.7982102264626	48.197	0.75444	48.955	48.528	49.282	0.75737					43	14	4	0	0	0	0.018709	1	18056	18056		132.13	72.061	1	26007000			57472	3330	41864	42195	56112	56112					0.02961127988987755
VEINIDHKF	9	Unmodified	_VEINIDHKF_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	372.201229	1113.58186	0.82962	0.00030878	-0.63228	-0.00023533	0.19734	7.345E-05	372.20099886407166	49.008	1.1647	49.008	48.629	49.793	0	0.07515	-0.00010714	NaN	64.927	64	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103540000			57473	3330	41864	42195							0.02961127988987755
VEINQKKYY	9	Unmodified	_VEINQKKYY_					0	0	0			REV__tr|U7SZF0|U7SZF0_FUSNUFidodomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00727PE=4SV=1	REV__tr|U7SZF0|U7SZF0_FUSNUFidodomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00727PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	592.6844482421875	2	592.819138	1183.62372	-0.81022	-0.00048031	-1.8852	-0.0011176	-2.6954	-0.0015979	592.8171616317971	51.615	0.45814	52.367	52.219	52.677	0.75225					14	8	3	0	0	0	0.77834	1	19407	19407		4.756	1.7608	1	2316000	+		57474	28643	41865	42196	56113	56113					0.03925683677516645
VEINQKKYY	9	Unmodified	_VEINQKKYY_					0	0	0			REV__tr|U7SZF0|U7SZF0_FUSNUFidodomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00727PE=4SV=1	REV__tr|U7SZF0|U7SZF0_FUSNUFidodomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00727PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	592.819138	1183.62372	-0.42024	-0.00024913	-3.4791	-0.0020625	-3.8994	-0.0023116	592.8166293228045	52.493	0.25573	52.493	52.387	52.643	0	0.063021	-0.00098653	NaN	4.756	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	930040	+		57475	28643	41865	42196							0.03925683677516645
VEIRQSTF	8	Unmodified	_VEIRQSTF_					0	0	0			REV__CADM3|p.S222F|3|0.43|ENSG00000162706|chr1:159194014-159194014|C/T|missense_variant	REV__CADM3|p.S222F|3|0.43|ENSG00000162706|chr1:159194014-159194014|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	490.66387939453125	2	490.263999	978.513445	-0.36498	-0.00017894	-0.17361	-8.5114E-05	-0.53859	-0.00026405	490.263776024244	46.798	0.91649	47.56	47.054	47.97	0.76128					33	17	3	0	0	0	0.70206	1	17557	17557		34.102	3.4659	1	3095700	+		57476	15561	41866	42197	56114	56114					0.02332883409144415
VEISRSRFMQR	11	Unmodified	_VEISRSRFMQR_					0	0	0			REV__ENSG00000113600|ENST00000263408|C9	REV__ENSG00000113600|ENST00000263408|C9	MSMS	A375_MHC_IP_R2	2	705.1138305664062	2	704.877527	1407.7405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.46	1	119.99	119.49	120.49	0.5321								0	0	0	0.16164	1	45509	45509		10.151	0.076642	1		+		57477	17793	41867	42198	56115	56115					0.052940986256317046
VEKDKEMYHDY	11	Unmodified	_VEKDKEMYHDY_					0	0	0		ENSG00000179008|ENST00000321731|C14orf39	ENSG00000179008|ENST00000321731|C14orf39	ENSG00000179008|ENST00000321731|C14orf39	MULTI-MSMS	A375_MHC_IP_R1	1	729.2235717773438	2	728.824292	1455.63403	-0.91119	-0.0006641	-0.35348	-0.00025762	-1.2647	-0.00092172	728.8240958812705	142.26	0.20224	142.26	142.13	142.34	0					5	3	2	0	0	0	0.73647	1	54612	54612		2.7352	1.4057	1	2204700			57478	8198	41868	42199	56116	56116					-0.07556121450215869
VEKDKEMYHDY	11	Unmodified	_VEKDKEMYHDY_					0	0	0		ENSG00000179008|ENST00000321731|C14orf39	ENSG00000179008|ENST00000321731|C14orf39	ENSG00000179008|ENST00000321731|C14orf39	MULTI-MATCH	A375_MHC_IP_R2	2		2	728.824292	1455.63403	-0.61096	-0.00044529	0.10205	7.4379E-05	-0.50891	-0.00037091	728.8241638036872	142.32	0.15372	142.36	142.23	142.38	0.030731	0.047395	0.00044048	NaN	2.7352	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1189600			57479	8198	41868	42199							-0.07556121450215869
VEKDNHHI	8	Unmodified	_VEKDNHHI_					0	0	0			REV__nc|ENSG00000041515|Q9Y6X6|MYO16	REV__nc|ENSG00000041515|Q9Y6X6|MYO16	MSMS	A375_MHC_IP_R2	2	496.3849792480469	2	496.251423	990.488293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.446	1	85.182	84.682	85.682	0.73601								0	0	0	0.16876	1	32101	32101		13.508	2.3934	1		+		57480	16342	41869	42200	56117	56117					-0.007331713934377149
VEKDPGVL	8	Unmodified	_VEKDPGVL_					0	0	0			REV__ENSG00000095464|ENST00000371447|PDE6C	REV__ENSG00000095464|ENST00000371447|PDE6C	MULTI-SECPEP	A375_MHC_IP_R1	1	429.1409606933594	2	428.742368	855.470183	-0.49258	-0.00021119	2.0248	0.00086813	1.5323	0.00065694	428.74120664890575	140.66	1.188	140.66	140.18	141.37	0					28	22	2	0	0	0	0.972	1	54027	54027		0.79363	0	1	957350	+		57481	16993	41870	42201	56118	56118					0.03666693631862472
VEKEETLIFEV	11	Unmodified	_VEKEETLIFEV_					0	0	0		ADGRV1|p.G1058E|2|0.49|ENSG00000164199|chr5:90647648-90647648|G/A|missense_variant	ADGRV1|p.G1058E|2|0.49|ENSG00000164199|chr5:90647648-90647648|G/A|missense_variant	ADGRV1|p.G1058E|2|0.49|ENSG00000164199|chr5:90647648-90647648|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	668.7550659179688	2	668.355751	1334.69695	-0.84134	-0.00056231	-0.1364	-9.1162E-05	-0.97774	-0.00065348	668.3556149184368	132.97	0.25644	132.97	132.84	133.1	0					10	4	3	0	0	0	0.53744	1	51297	51297		41.956	15.687	1	16060000			57482	72	41871	42202	56119	56119					0.04298767609452625
VEKEETLIFEV	11	Unmodified	_VEKEETLIFEV_					0	0	0		ADGRV1|p.G1058E|2|0.49|ENSG00000164199|chr5:90647648-90647648|G/A|missense_variant	ADGRV1|p.G1058E|2|0.49|ENSG00000164199|chr5:90647648-90647648|G/A|missense_variant	ADGRV1|p.G1058E|2|0.49|ENSG00000164199|chr5:90647648-90647648|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	668.355751	1334.69695	-0.84134	-0.00056231	-0.1364	-9.1162E-05	-0.97774	-0.00065348	668.3556149184368	132.97	0.25644	132.97	132.84	133.1	0	-0.0021197	2.2595E-06	NaN	41.956	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16060000			57483	72	41871	42202							0.04298767609452625
VEKEQIWAEAL	11	Unmodified	_VEKEQIWAEAL_					0	0	0			REV__SPTBN5|p.Q2777Rfs*33|1|0.22|ENSG00000137877|chr15:41857606-41857609|CTGG/-|frameshift_variant	REV__SPTBN5|p.Q2777Rfs*33|1|0.22|ENSG00000137877|chr15:41857606-41857609|CTGG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	439.63427734375	3	439.234599	1314.68197	-0.16064	-7.0558E-05	0.22099	9.7067E-05	0.060353	2.6509E-05	439.2343995852418	28.254	0.85778	28.254	27.836	28.694	0					46	16	4	0	0	0	0.4957	2	8701	8701;8751		31.462	11.475	1	8186000	+		57484	19047	41872	42203	56120;56121	56120					0.037213205321450005
VEKGIIDPTKV	11	Unmodified	_VEKGIIDPTKV_					0	0	0		ENSG00000144381|ENST00000388968|HSPD1	ENSG00000144381|ENST00000388968|HSPD1	ENSG00000144381|ENST00000388968|HSPD1	MSMS	A375_MHC_IP_R2	2	400.27215576171875	3	400.239573	1197.69689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.126	1	94.871	94.371	95.371	0.74474								0	0	0	0.16182	1	35775	35775		9.2438	2.6203	1				57485	5482	41873	42204	56122	56122					0.10594812400108822
VEKHLNAQL	9	Unmodified	_VEKHLNAQL_					0	0	0		ENST00000474112.5_1_3:63898274-63982174:+|nuORF;ENSG00000163635|ENST00000674280|ATXN7;nc|ENSG00000163635|O15265-2|ATXN7;nc|ENSG00000163635|O15265-3|ATXN7;ENST00000484668.1_1_3:63973932-63976536:+|nuORF	ENST00000474112.5_1_3:63898274-63982174:+|nuORF	ENST00000474112.5_1_3:63898274-63982174:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	351.6011962890625	3	351.201341	1050.58219	-0.10219	-3.5889E-05	-0.24564	-8.6271E-05	-0.34783	-0.00012216	351.2012078345955	33.545	0.40701	33.545	33.241	33.648	0					14	7	3	0	0	0	0.74169	1	10991	10991		7.9454	4.0691	1	3310100			57486	6698	41874	42205	56123	56123					0.058925477088678235
VEKHLNAQL	9	Unmodified	_VEKHLNAQL_					0	0	0		ENST00000474112.5_1_3:63898274-63982174:+|nuORF;ENSG00000163635|ENST00000674280|ATXN7;nc|ENSG00000163635|O15265-2|ATXN7;nc|ENSG00000163635|O15265-3|ATXN7;ENST00000484668.1_1_3:63973932-63976536:+|nuORF	ENST00000474112.5_1_3:63898274-63982174:+|nuORF	ENST00000474112.5_1_3:63898274-63982174:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	526.1436767578125	2	526.298373	1050.58219	-0.44384	-0.00023359	-0.43655	-0.00022976	-0.88039	-0.00046335	526.2980642204459	33.561	0.35592	33.561	33.342	33.698	0					9	6	2	0	0	0	0.49205	1	10989	10989		34.402	9.0024	1	2479200			57487	6698	41874	42205	56124	56124					0.058925477088678235
VEKHLNAQL	9	Unmodified	_VEKHLNAQL_					0	0	0		ENST00000474112.5_1_3:63898274-63982174:+|nuORF;ENSG00000163635|ENST00000674280|ATXN7;nc|ENSG00000163635|O15265-2|ATXN7;nc|ENSG00000163635|O15265-3|ATXN7;ENST00000484668.1_1_3:63973932-63976536:+|nuORF	ENST00000474112.5_1_3:63898274-63982174:+|nuORF	ENST00000474112.5_1_3:63898274-63982174:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	526.298373	1050.58219	-0.51589	-0.00027151	-0.71333	-0.00037542	-1.2292	-0.00064694	526.2978648389008	32.687	0.30366	33.424	33.265	33.569	0.73691	-0.068102	-0.00016406	NaN	27.629	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2085900			57488	6698	41874	42205							0.058925477088678235
VEKHLNAQL	9	Unmodified	_VEKHLNAQL_					0	0	0		ENST00000474112.5_1_3:63898274-63982174:+|nuORF;ENSG00000163635|ENST00000674280|ATXN7;nc|ENSG00000163635|O15265-2|ATXN7;nc|ENSG00000163635|O15265-3|ATXN7;ENST00000484668.1_1_3:63973932-63976536:+|nuORF	ENST00000474112.5_1_3:63898274-63982174:+|nuORF	ENST00000474112.5_1_3:63898274-63982174:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	351.201341	1050.58219	-0.29239	-0.00010269	-0.047175	-1.6568E-05	-0.33957	-0.00011926	351.20124144057826	32.684	0.45684	33.421	33.265	33.722	0.73691	-0.061915	7.5586E-05	NaN	11.518	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2409400			57489	6698	41874	42205							0.058925477088678235
VEKHYREMEE	10	Unmodified	_VEKHYREMEE_					0	0	0		ENSG00000173226|ENST00000310864|IQCB1;nc|ENSG00000173226|Q15051-2|IQCB1	ENSG00000173226|ENST00000310864|IQCB1	ENSG00000173226|ENST00000310864|IQCB1	MSMS	A375_MHC_IP_R2	2	675.311279296875	2	675.311351	1348.60815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.67	1	142.71	142.21	143.21	0.030731								0	0	0	0.15596	1	55776	55776		1.4819	0	1				57490	7779	41875	42206	56125	56125					-0.05220970901837063
VEKIRYCITK	10	Unmodified	_VEKIRYCITK_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF;ENST00000490413.1_1_1:113240935-113242190:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-MSMS	A375_MHC_IP_R1	1	418.64691162109375	3	418.240919	1251.70093	0.40326	0.00016866	-0.92917	-0.00038862	-0.52591	-0.00021996	418.24060465467596	21.313	0.86251	21.313	20.946	21.808	0					23	16	2	0	0	0	0.71455	1	5467	5467		5.7834	0	1	1170600			57491	6139	41876	42207	56126	56126					0.08514578622180125
VEKKKKIKK	9	Unmodified	_VEKKKKIKK_					0	0	0		ENSG00000196436|ENST00000692376|NPIPB15	ENSG00000196436|ENST00000692376|NPIPB15	ENSG00000196436|ENST00000692376|NPIPB15	MSMS	A375_MHC_IP_R2	2	564.86279296875	2	564.894983	1127.77541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.182	1	97.938	97.438	98.438	0.75586								0	0	0	0.15486	1	36888	36888		0.52476	0.17413	1				57492	9040	41877	42208	56127	56127					0.2166370949589691
VEKKKQKKEK	10	Unmodified	_VEKKKQKKEK_					0	0	0		nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E;ENSG00000198216|ENST00000367573|CACNA1E	nc|ENSG00000198216|Q15878-2|CACNA1E	nc|ENSG00000198216|Q15878-2|CACNA1E	MSMS	A375_MHC_IP_R2	2	636.8635864257812	2	636.903537	1271.79252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.83	1	99.589	99.089	100.09	0.75977								0	0	0	0.15479	1	37488	37488		5.2969	0.39987	1				57493	9243	41878	42209	56128	56128					0.16749585311049486
VEKKTRKVWA	10	Unmodified	_VEKKTRKVWA_					0	0	0		nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;ENST00000513111.1_1_3:123366069-123368027:-|nuORF;nc|ENSG00000065534|Q15746-9|MYLK;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK	nc|ENSG00000065534|Q15746-3|MYLK	nc|ENSG00000065534|Q15746-3|MYLK	MSMS	A375_MHC_IP_R1	1	622.7720336914062	2	622.877322	1243.74009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.88	1	142.88	142.38	143.38	0								0	0	0	0.15531	1	54820	54820		3.5965	0.60125	1				57494	1387	41879	42210	56129	56129					0.12797046968103132
VEKKTSRKKRK	11	Unmodified	_VEKKTSRKKRK_					0	0	0			REV__ENSG00000105976|ENST00000397752|MET	REV__ENSG00000105976|ENST00000397752|MET	MSMS	A375_MHC_IP_R1	1	694.446044921875	2	694.446434	1386.87832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.158	1	61.158	60.658	61.658	0								0	0	0	0.16302	1	22040	22040		2.9952	1.6657	1		+		57495	17422	41880	42211	56130	56130					0.20035170216533515
VEKLKRKREKV	11	Unmodified	_VEKLKRKREKV_					0	0	0			REV__ENSG00000163617|ENST00000295878|CCDC191	REV__ENSG00000163617|ENST00000295878|CCDC191	MSMS	A375_MHC_IP_R1	1	707.2544555664062	2	706.956635	1411.89872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.179	1	69.179	68.679	69.679	0								0	0	0	0.16353	1	25098	25098		0.35063	0	1		+		57496	20384	41881	42212	56131	56131					0.20924340876308634
VEKLKRKREKV	11	Unmodified	_VEKLKRKREKV_					0	0	0			REV__ENSG00000163617|ENST00000295878|CCDC191	REV__ENSG00000163617|ENST00000295878|CCDC191	MSMS	A375_MHC_IP_R1	1	706.9537963867188	2	706.956635	1411.89872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.724	1	75.724	75.224	76.224	0								0	0	0	0.16353	1	27591	27591		0.35063	0	1		+		57497	20384	41881	42212	56132	56132					0.20924340876308634
VEKLNSTI	8	Unmodified	_VEKLNSTI_					0	0	0			REV__tr|U7T2J8|U7T2J8_FUSNUinorganicdiphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00474PE=4SV=1	REV__tr|U7T2J8|U7T2J8_FUSNUinorganicdiphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00474PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	452.6613464355469	2	452.260925	902.507297	-0.53932	-0.00024391	2.8353	0.0012823	2.296	0.0010384	452.26220910407176	140.47	0.41412	140.47	140.23	140.65	0					14	7	3	0	0	0	0.77624	1	53958	53958		8.5933	0	1	1909000	+		57498	28746	41882	42213	56133	56133					0.05214365177630498
VEKLNSTI	8	Unmodified	_VEKLNSTI_					0	0	0			REV__tr|U7T2J8|U7T2J8_FUSNUinorganicdiphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00474PE=4SV=1	REV__tr|U7T2J8|U7T2J8_FUSNUinorganicdiphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00474PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	452.260925	902.507297	-0.068005	-3.0756E-05	1.8187	0.00082254	1.7507	0.00079179	452.2616736165971	140.48	0.30516	140.53	140.35	140.65	0.04216	0.029338	-7.0191E-05	NaN	8.5933	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2353600	+		57499	28746	41882	42213							0.05214365177630498
VEKMGHEAV	9	Unmodified	_VEKMGHEAV_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	MSMS	A375_MHC_IP_R2	2	500.23394775390625	2	500.250034	998.485516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.455	1	45.224	44.724	45.724	0.7691								0	0	0	0.15486	1	16592	16592		11.64	0	1				57500	7507	41883	42214	56134	56134					-0.01378762842591641
VEKNQDYY	8	Unmodified	_VEKNQDYY_					0	0	0		nc|ENSG00000100722|Q6PJT7-5|ZC3H14	nc|ENSG00000100722|Q6PJT7-5|ZC3H14	nc|ENSG00000100722|Q6PJT7-5|ZC3H14	MULTI-MSMS	A375_MHC_IP_R2	2	529.7037963867188	2	529.743096	1057.47164	-0.87083	-0.00046132	-0.018918	-1.0022E-05	-0.88975	-0.00047134	529.7430113694568	49.515	0.9118	50.272	49.639	50.551	0.75737					32	17	3	0	0	0	0.7754	1	18435	18435		11.64	3.047	1	6651900			57501	14508	41884	42215	56135	56135					-0.05479717070033985
VEKPEGGGGY	10	Unmodified	_VEKPEGGGGY_					0	0	0		ENST00000460850.1_1_1:157105261-157106150:-|nuORF;nc|ENSG00000117036|P41162-2|ETV3;ENSG00000117036|ENST00000368192|ETV3	ENST00000460850.1_1_1:157105261-157106150:-|nuORF	ENST00000460850.1_1_1:157105261-157106150:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	497.1793518066406	2	496.737814	991.461075	-0.45166	-0.00022436	0.12471	6.1946E-05	-0.32696	-0.00016241	496.7377834715024	64.679	0.91521	65.419	65.054	65.97	0.74023					42	17	4	0	0	0	0.44858	1	24620	24620		31.268	1.4278	1	12247000			57502	3453	41885	42216	56136	56136					-0.034996997244547856
VEKQHDGQL	9	Unmodified	_VEKQHDGQL_					0	0	0			REV__ENSG00000137806|ENST00000260361|NDUFAF1	REV__ENSG00000137806|ENST00000260361|NDUFAF1	MULTI-MSMS	A375_MHC_IP_R1	1	527.1687622070312	2	527.269813	1052.52507	-0.5277	-0.00027824	0.80104	0.00042237	0.27334	0.00014412	527.2700816757234	57.98	0.50778	57.98	57.72	58.228	0					15	9	2	0	0	0	0.44024	1	20874	20874		22.736	5.6234	1	2041700	+		57503	19033	41886	42217	56137	56137					0.0009108043248033937
VEKRCVKGSP	10	Unmodified	_VEKRCVKGSP_					0	0	0			REV__nc|ENSG00000168594|Q9UKF5-2|ADAM29	REV__nc|ENSG00000168594|Q9UKF5-2|ADAM29	MULTI-SECPEP	A375_MHC_IP_R2	2	552.2069091796875	2	551.805508	1101.59646	-1.07	-0.00059041	2.0861	0.0011511	1.0161	0.0005607	551.8074862039784	23.511	0.30335	24.141	23.979	24.283	0.63015					9	5	3	0	0	0	0.70528	1	7635	7635		26.268	8.1218	1	2317000	+		57504	20869	41887	42218	56138	56138					0.04972876865485887
VEKRCVKGSP	10	Unmodified	_VEKRCVKGSP_					0	0	0			REV__nc|ENSG00000168594|Q9UKF5-2|ADAM29	REV__nc|ENSG00000168594|Q9UKF5-2|ADAM29	MULTI-MATCH	A375_MHC_IP_R1	1		2	551.805508	1101.59646	-0.74709	-0.00041225	2.9085	0.0016049	2.1614	0.0011927	551.8070551075908	24.197	0.25532	24.197	24.092	24.347	0	0.027845	0.00032606	NaN	20.415	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2084400	+		57505	20869	41887	42218							0.04972876865485887
VEKRLARPV	9	Unmodified	_VEKRLARPV_					0	0	0		nc|ENSG00000180113|O60522-2|TDRD6;ENSG00000180113|ENST00000316081|TDRD6	nc|ENSG00000180113|O60522-2|TDRD6	nc|ENSG00000180113|O60522-2|TDRD6	MULTI-SECPEP	A375_MHC_IP_R2	2	534.7377319335938	2	534.337833	1066.66111	-0.72498	-0.00038739	0.091465	4.8873E-05	-0.63352	-0.00033851	534.337871640692	48.348	0.45233	49.105	48.779	49.231	0.75737					13	8	2	0	0	0	0.80535	1	18124	18124		0.40072	0	1	2640500			57506	8278	41888	42219	56139	56139					0.13044819733772783
VEKRLETLM	9	Unmodified	_VEKRLETLM_					0	0	0			REV__NANP|p.A116V|1|0.43|ENSG00000170191|chr20:25616325-25616325|G/A|missense_variant	REV__NANP|p.A116V|1|0.43|ENSG00000170191|chr20:25616325-25616325|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	373.9461364746094	3	373.54612	1117.61653	0.53711	0.00020064	-1.1776	-0.00043989	-0.64048	-0.00023925	373.5458129522138	42.764	0.40509	42.764	42.537	42.942	0					16	7	3	0	0	0	0.53367	1	14870	14870		12.873	0.69786	1	2385000	+		57507	20973	41889	42220	56140	56140					0.06242627805431766
VEKRYDKFRQM	11	Unmodified	_VEKRYDKFRQM_					0	0	0		tr|U7SYB5|U7SYB5_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accAPE=3SV=1	tr|U7SYB5|U7SYB5_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accAPE=3SV=1	tr|U7SYB5|U7SYB5_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accAPE=3SV=1	MSMS	A375_MHC_IP_R2	2	750.3927001953125	2	750.39301	1498.77147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.369	1	100.13	99.629	100.63	0.75977								0	0	0	0.16337	1	37694	37694		1.1933	0	1				57508	29836	41890	42221	56141	56141					0.04203251939838992
VEKRYPLE	8	Unmodified	_VEKRYPLE_					0	0	0			REV__ENSG00000186952|ENST00000455884|TMEM232	REV__ENSG00000186952|ENST00000455884|TMEM232	MULTI-SECPEP	A375_MHC_IP_R1	1	517.1768798828125	2	517.287474	1032.5604	-0.40104	-0.00020745	-0.024686	-1.277E-05	-0.42572	-0.00022022	517.2870767946904	42.473	0.35373	42.473	42.233	42.587	0					9	6	2	0	0	0	0.8824	1	14748	14748		16.942	0	1	1370500	+		57509	21999	41891	42222	56142	56142					0.04541742960304873
VEKSEEIF	8	Unmodified	_VEKSEEIF_					0	0	0		tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	491.1939392089844	2	490.75039	979.486227	-0.40167	-0.00019712	0.41924	0.00020574	0.01757	8.6225E-06	490.7506157868249	84.796	2.5445	85.532	85.018	87.563	0.73601					104	49	3	0	0	0	0.76248	1	32081	32081		16.942	2.3606	1	10470000			57510	29559	41892	42223	56143	56143					-0.0043364492189539305
VEKSIGMILLF	11	Unmodified	_VEKSIGMILLF_					0	0	0		ENST00000521922.5_1_8:103274261-103276712:-|nuORF	ENST00000521922.5_1_8:103274261-103276712:-|nuORF	ENST00000521922.5_1_8:103274261-103276712:-|nuORF	MSMS	A375_MHC_IP_R2	2	625.6358032226562	2	625.364867	1248.71518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.852	1	95.596	95.096	96.096	0.74474								0	0	0	0.16232	1	36039	36039		6.6304	0.42459	1				57511	13017	41893	42224	56144	56144					0.10077231050513547
VEKSIKIGDIY	11	Unmodified	_VEKSIKIGDIY_					0	0	0		tr|U7SUD8|U7SUD8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01390PE=4SV=1	tr|U7SUD8|U7SUD8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01390PE=4SV=1	tr|U7SUD8|U7SUD8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01390PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	632.0692138671875	2	632.861003	1263.70745	-0.64392	-0.00040751	-1.904	-0.001205	-2.5479	-0.0016125	632.8602725199341	93.772	0.6572	94.516	94.262	94.919	0.74474					16	12	2	0	0	0	0.98748	1	35701	35701		2.7352	1.4057	1	1165500			57512	29763	41894	42225	56145	56145					0.08614795054563729
VEKSLASVAW	10	Unmodified	_VEKSLASVAW_					0	0	0			REV__AK7|p.E138K|1|0.3|ENSG00000140057|chr14:96408855-96408855|G/A|missense_variant	REV__AK7|p.E138K|1|0.3|ENSG00000140057|chr14:96408855-96408855|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	364.2633361816406	3	363.86948	1088.58661	0.065779	2.3935E-05	0.79291	0.00028852	0.85869	0.00031245	363.8695451477008	44.066	1.1634	44.835	44.38	45.543	0.7691					31	22	2	0	0	0	0.64716	1	16595	16595		14.957	7.4801	1	760260	+		57513	15347	41895	42226	56146	56146					0.045860121317673475
VEKTDFEEF	9	Unmodified	_VEKTDFEEF_					0	0	0		ENST00000491040.5_1_20:33934876-33981976:-|nuORF;nc|ENSG00000101019|Q9NVA1-5|UQCC1;nc|ENSG00000101019|Q9NVA1-2|UQCC1;ENSG00000101019|ENST00000374385|UQCC1	ENST00000491040.5_1_20:33934876-33981976:-|nuORF	ENST00000491040.5_1_20:33934876-33981976:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	571.7101440429688	2	572.263862	1142.51317	-0.1855	-0.00010616	0.47688	0.0002729	0.29137	0.00016674	572.2641778819184	105.02	0.20222	105.02	104.84	105.05	0					5	3	2	0	0	0	0.74412	1	38520	38520		14.838	1.3304	1	516600			57514	2245	41896	42227	56147	56147					-0.05238581101366435
VEKVDQATYI	10	Unmodified	_VEKVDQATYI_					0	0	0			REV__ENST00000568777.5_1_15:72638642-72646100:-|nuORF	REV__ENST00000568777.5_1_15:72638642-72646100:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	583.689697265625	2	583.308603	1164.60265	-0.58475	-0.00034109	-0.1691	-9.8636E-05	-0.75384	-0.00043972	583.3086430122885	66.24	0.86667	66.977	66.374	67.241	0.73746					26	16	3	0	0	0	0.9267	1	24923	24923		10.8	10.8	1	1924300	+		57515	26264	41897	42228	56148	56148					0.026936735780054732
VEKVKEDLV	9	Unmodified	_VEKVKEDLV_					0	0	0		ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MSMS	A375_MHC_IP_R2	2	529.8189697265625	2	529.808239	1057.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.64	1	87.373	86.873	87.873	0.733								0	0	0	0.15486	1	32949	32949		11.64	0.81637	1				57516	5883	41898	42229	56149	56149					0.0754287892893899
VEKVKEFLS	9	Unmodified	_VEKVKEFLS_					0	0	0		ENSG00000156136|ENST00000286648|DCK	ENSG00000156136|ENST00000286648|DCK	ENSG00000156136|ENST00000286648|DCK	MULTI-SECPEP	A375_MHC_IP_R1	1	360.2815856933594	3	360.209613	1077.60701	0.16787	6.047E-05	0.24472	8.8151E-05	0.4126	0.00014862	360.2096484418547	50.981	0.65762	50.981	50.561	51.219	0					15	12	2	0	0	0	0.63327	1	18041	18041		8.9762	6.133	1	1409400			57517	6176	41899	42230	56150	56150					0.07131182791590618
VEKVKEFLS	9	Unmodified	_VEKVKEFLS_					0	0	0		ENSG00000156136|ENST00000286648|DCK	ENSG00000156136|ENST00000286648|DCK	ENSG00000156136|ENST00000286648|DCK	MULTI-SECPEP	A375_MHC_IP_R2	2	360.28155517578125	3	360.209613	1077.60701	-0.4419	-0.00015918	0.11471	4.132E-05	-0.32719	-0.00011786	360.20964837393745	49.907	0.45895	50.661	50.445	50.904	0.75406					12	8	2	0	0	0	0.71341	1	18747	18747		5.7834	0	1	839740			57518	6176	41899	42230	56151	56151					0.07131182791590618
VEKVKHED	8	Unmodified	_VEKVKHED_					0	0	0		ENSG00000135222|ENST00000353151|CSN2	ENSG00000135222|ENST00000353151|CSN2	ENSG00000135222|ENST00000353151|CSN2	MULTI-SECPEP	A375_MHC_IP_R1	1	491.6900634765625	2	492.261456	982.50836	-0.11773	-5.7952E-05	-0.41396	-0.00020378	-0.53168	-0.00026173	492.26144362250636	42.877	0.86411	42.877	42.638	43.502	0					27	16	2	0	0	0	0.86263	1	14986	14986		20.454	4.3045	1	1585700			57519	4657	41900	42231	56152	56152					0.016405795465288975
VEKVLQRLF	9	Unmodified	_VEKVLQRLF_					0	0	0		ENSG00000104714|ENST00000262109|ERICH1	ENSG00000104714|ENST00000262109|ERICH1	ENSG00000104714|ENST00000262109|ERICH1	MULTI-SECPEP	A375_MHC_IP_R2	2	377.6155700683594	3	377.901003	1130.68118	0.091252	3.4484E-05	0.19639	7.4214E-05	0.28764	0.0001087	377.9016207539571	32.807	0.25315	33.544	33.367	33.62	0.73692					6	4	2	0	0	0	0.78351	1	11720	11720		2.7352	0	1	924440			57520	2528	41901	42232	56153	56153					0.12106570673745409
VEKWEAEPLSR	11	Unmodified	_VEKWEAEPLSR_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MSMS	A375_MHC_IP_R1	1	672.305419921875	2	672.351334	1342.68811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.962	1	90.962	90.462	91.462	0								0	0	0	0.16213	1	33423	33423		7.609	0.88579	1		+		57521	18931	41902	42233	56154	56154					0.030478387636549087
VEKWFDSF	8	Unmodified	_VEKWFDSF_					0	0	0			REV__SIGIRR|p.S296F|1|0.5|ENSG00000185187|chr11:406531-406531|G/A|missense_variant	REV__SIGIRR|p.S296F|1|0.5|ENSG00000185187|chr11:406531-406531|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	529.7149658203125	2	529.2531	1056.49165	-0.63432	-0.00033571	-1.9438	-0.0010288	-2.5781	-0.0013645	529.2523700157809	41.653	0.40834	42.427	42.198	42.607	0.77451					12	7	2	0	0	0	0.97144	1	15381	15381		9.3474	0	1	1956300	+		57522	27962	41903	42234	56155	56155					-0.034339213394332546
VEKWTPFLAA	10	Unmodified	_VEKWTPFLAA_					0	0	0			REV__ENSG00000176092|ENST00000308182|CRYBG2	REV__ENSG00000176092|ENST00000308182|CRYBG2	MULTI-SECPEP	A375_MHC_IP_R2	2	581.71728515625	2	581.318774	1160.623	-0.37691	-0.00021911	-1.199	-0.00069702	-1.5759	-0.00091613	581.3180455281033	45.359	0.4554	46.124	45.947	46.403	0.76519					11	8	2	0	0	0	0.87043	1	17015	17015		20.415	5.5763	1	3006600	+		57523	21384	41904	42235	56156	56156					0.0491088902847423
VEKYLRRRKYS	11	Unmodified	_VEKYLRRRKYS_					0	0	0		nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-7|DYSF;ENSG00000135636|ENST00000410020|DYSF;nc|ENSG00000135636|O75923-15|DYSF	nc|ENSG00000135636|O75923-3|DYSF	nc|ENSG00000135636|O75923-3|DYSF	MSMS	A375_MHC_IP_R1	1	749.6594848632812	2	749.436067	1496.85758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.78	1	117.78	117.28	118.28	0								0	0	0	0.16273	1	43293	43293		4.5289	3.1993	1				57524	4700	41905	42236	56157	56157					0.12902579836872974
VEKYNKIKI	9	Unmodified	_VEKYNKIKI_					0	0	0		nc|ENSG00000204977|O60858-3|TRIM13;ENSG00000204977|ENST00000378182|TRIM13;nc|ENSG00000204977|O60858-2|TRIM13	nc|ENSG00000204977|O60858-3|TRIM13	nc|ENSG00000204977|O60858-3|TRIM13	MSMS	A375_MHC_IP_R2	2	378.9601745605469	3	378.900891	1133.68084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.508	1	24.139	23.639	24.639	0.63014								0	0	0	0.14934	1	7578	7578		22.658	6.9195	1				57525	9493	41906	42237	56158	56158					0.11935150953877383
VELDKVQFK	9	Unmodified	_VELDKVQFK_					0	0	0			REV__PCDHGA8|p.E136K|1|0.41|ENSG00000253767|chr5:141393219-141393219|G/A|missense_variant	REV__PCDHGA8|p.E136K|1|0.41|ENSG00000253767|chr5:141393219-141393219|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	369.9363098144531	3	369.213246	1104.61791	0.63074	0.00023288	-0.28926	-0.0001068	0.34149	0.00012608	369.213181396541	38.835	0.81416	38.835	38.577	39.391	0					48	15	5	0	0	0	0.54799	1	13302	13302		17.443	3.0373	1	92101000	+		57526	27742	41907	42238	56159	56159					0.06978585165848017
VELDPEIQ	8	Unmodified	_VELDPEIQ_					0	0	0		ENSG00000186049|ENST00000305748|KRT73;CON__Q32MB2;nc|ENSG00000186049|Q86Y46-2|KRT73;ENSG00000139648|ENST00000267119|KRT71;CON__Q3SY84;KRT74|p.V136M|1|0.73|ENSG00000170484|chr12:52573372-52573372|C/T|missense_variant;CON__Q6NXH9;CON__Q6IME9;ENSG00000170484|ENST00000305620|KRT74;CON__Q7RTS7;CON__Q9R0H5	ENSG00000186049|ENST00000305748|KRT73;CON__Q6IME9;ENSG00000170484|ENST00000305620|KRT74;CON__Q9R0H5	CON__Q9R0H5	MULTI-MSMS	A375_MHC_IP_R2	2	471.71600341796875	2	471.742565	941.470577	-0.62839	-0.00029644	0.33381	0.00015747	-0.29458	-0.00013897	471.7425639627025	65.018	0.25457	65.756	65.613	65.867	0.73811					6	4	2	0	0	0	0.76248	1	24658	24658		16.942	0	1	576740		+	57527	635;616;629;625	41908	42239	56160	56160					-0.002499314389410756
VELDQVIFDE	10	Unmodified	_VELDQVIFDE_					0	0	0			REV__nc|ENSG00000111912|Q8NI08-7|NCOA7	REV__nc|ENSG00000111912|Q8NI08-7|NCOA7	MSMS	A375_MHC_IP_R2	2	603.7220458984375	2	603.798069	1205.58158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.613	1	74.349	73.849	74.849	0.73541								0	0	0	0.15372	1	27940	27940		8.7454	2.0222	1		+		57528	17704	41909	42240	56161	56161					-0.012983365214950027
VELEAFDASRE	11	Unmodified	_VELEAFDASRE_					0	0	0			REV__nc|ENSG00000111602|Q9UNS1-2|TIMELESS	REV__nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-MSMS	A375_MHC_IP_R2	2	633.7032470703125	2	633.304049	1264.59355	-0.67077	-0.0004248	-0.23525	-0.00014898	-0.90601	-0.00057378	633.3038159455386	47.704	0.75895	48.466	48.225	48.984	0.76128					31	14	3	0	0	0	0.63737	1	17902	17902		20.415	2.9719	1	5653400	+		57529	17678	41910	42241	56162	56162					-0.028167197783204756
VELEAFDASRE	11	Unmodified	_VELEAFDASRE_					0	0	0			REV__nc|ENSG00000111602|Q9UNS1-2|TIMELESS	REV__nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	633.304049	1264.59355	-0.27448	-0.00017383	-0.38427	-0.00024336	-0.65875	-0.00041719	633.303798558176	48.397	0.75968	48.397	48.122	48.882	0	-0.034146	-9.3341E-05	NaN	20.415	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5948600	+		57530	17678	41910	42241							-0.028167197783204756
VELEAFDASRE	11	Unmodified	_VELEAFDASRE_					0	0	0			REV__nc|ENSG00000111602|Q9UNS1-2|TIMELESS	REV__nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	633.304049	1264.59355	-0.67077	-0.0004248	-0.23525	-0.00014898	-0.90601	-0.00057378	633.3038159455386	47.704	0.75895	48.466	48.225	48.984	0.76128	0.034146	9.5415E-05	NaN	20.415	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5653400	+		57531	17678	41910	42241							-0.028167197783204756
VELEELAKY	9	Unmodified	_VELEELAKY_					0	0	0		ENST00000396401.7_1_8:54880629-54882983:-|nuORF	ENST00000396401.7_1_8:54880629-54882983:-|nuORF	ENST00000396401.7_1_8:54880629-54882983:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6615600585938	2	547.292422	1092.57029	-0.53553	-0.00029309	-1.4814	-0.00081074	-2.0169	-0.0011038	547.7939868060809	63.984	0.45676	63.984	63.684	64.141	0					9	8	2	0	0	0	0.71541	1	23042	23042		11.64	0	1	395970			57532	11489	41911	42242	56163	56163					0.0277088617501704
VELEKKKKKPF	11	Unmodified	_VELEKKKKKPF_					0	0	0		ENST00000394609.6_1_2:55199891-55199960:-|nuORF	ENST00000394609.6_1_2:55199891-55199960:-|nuORF	ENST00000394609.6_1_2:55199891-55199960:-|nuORF	MSMS	A375_MHC_IP_R2	2	687.7258911132812	2	687.429387	1372.84422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.574	1	77.315	76.815	77.815	0.74052								0	0	0	0.16297	1	29074	29074		3.2813	0.28607	1				57533	11454	41912	42243	56164	56164					0.1727132900491597
VELEMDTKF	9	Unmodified	_VELEMDTKF_					0	0	0			REV__ENST00000590408.1_1_19:33953899-34001945:-|nuORF	REV__ENST00000590408.1_1_19:33953899-34001945:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	555.6502075195312	2	556.270632	1110.52671	-0.38739	-0.00021549	-0.17502	-9.736E-05	-0.56241	-0.00031285	556.7706620442898	70.417	0.30756	70.417	70.135	70.442	0					9	5	2	0	0	0	0.67483	1	25557	25557		10.074	0	1	815550	+		57534	18294	41913	42244	56165	56165					-0.024130465938014822
VELERLKIK	9	Unmodified	_VELERLKIK_					0	0	0		ENST00000513565.6_1_5:122694091-122724023:-|nuORF;nc|ENSG00000168944|Q8N960-2|CEP120;ENSG00000168944|ENST00000306467|CEP120	ENST00000513565.6_1_5:122694091-122724023:-|nuORF	ENST00000513565.6_1_5:122694091-122724023:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	564.7600708007812	2	564.360973	1126.70739	-0.77005	-0.00043459	-0.086876	-4.9029E-05	-0.85693	-0.00048362	564.3606883998514	147.24	0.27544	147.24	147.15	147.42	0					64	32	4	0	0	0	0.7724	1	56266	56266		0.52476	0	1	392100			57535	7364	41914	42245	56166	56166					0.14910839845219925
VELEVYDFFFE	11	Unmodified	_VELEVYDFFFE_					0	0	0		ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MSMS	A375_MHC_IP_R1	1	479.45721435546875	3	479.55886	1435.65475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.518	1	23.518	23.018	24.018	0								0	0	0	0.16338	1	6472	6472		1.1098	0.096179	1				57536	6897	41915	42246	56167	56167					-0.04565207798918891
VELHTFYFVVF	11	Unmodified	_VELHTFYFVVF_					0	0	0			REV__nc|ENSG00000162600|Q96E52-2|OMA1	REV__nc|ENSG00000162600|Q96E52-2|OMA1	MSMS	A375_MHC_IP_R2	2	467.6424865722656	3	467.579818	1399.71762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.652	1	40.427	39.927	40.927	0.77451								0	0	0	0.16256	1	14651	14651		5.4027	0.68679	1		+		57537	20271	41916	42247	56168	56168					0.033754027797840536
VELIEGRRI	9	Unmodified	_VELIEGRRI_					0	0	0			REV__ENSG00000133246|ENST00000423345|PRAM1	REV__ENSG00000133246|ENST00000423345|PRAM1	MSMS	A375_MHC_IP_R1	1	362.27337646484375	3	362.220624	1083.64004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.055	1	20.055	19.555	20.555	0								0	0	0	0.15486	1	5089	5089		12.241	0.72278	1		+		57538	18713	41917	42248	56169	56169					0.10156809634281672
VELIEKQFR	9	Unmodified	_VELIEKQFR_					0	0	0			REV__ENST00000450453.6_2_1:163292714-163292795:+|nuORF	REV__ENST00000450453.6_2_1:163292714-163292795:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	388.6361389160156	3	387.892396	1160.65536	0.013129	5.0926E-06	0.025721	9.9768E-06	0.038849	1.5069E-05	387.89250866771954	47.47	0.35612	48.231	48.022	48.378	0.76128					9	6	2	0	0	0	0.70759	1	17757	17757		15.739	0	1	2554200	+		57539	24885	41918	42249	56170	56170					0.08145676431468019
VELKALRLL	9	Unmodified	_VELKALRLL_					0	0	0		SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant;nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;SMARCA2|p.T377I|1|0.67|ENSG00000080503|chr9:2054680-2054680|C/T|missense_variant	SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant	SMARCA2|p.D1158Pfs*49|1|0.3|ENSG00000080503|chr9:2115832-2115833|-/CCAA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	352.2742919921875	3	352.237615	1053.69102	-0.083653	-2.9466E-05	-0.5442	-0.00019169	-0.62785	-0.00022115	352.23737199796034	59.573	0.40591	59.573	59.346	59.752	0					10	7	2	0	0	0	0.73491	1	21402	21402		3.8763	0	1	1381900			57540	1714	41919	42250	56171	56171					0.1663175867913651
VELKRLEKY	9	Unmodified	_VELKRLEKY_					0	0	0			REV__ENSG00000084463|ENST00000261167|WBP11	REV__ENSG00000084463|ENST00000261167|WBP11	MSMS	A375_MHC_IP_R1	1	393.27685546875	3	393.236163	1176.68666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.732	1	24.732	24.232	25.232	0								0	0	0	0.15486	1	7088	7088		8.9762	1.4992	1		+		57541	16822	41920	42251	56172	56172					0.10538249465571425
VELLFDSVIH	10	Unmodified	_VELLFDSVIH_					0	0	0		ENSG00000123739|ENST00000243501|PLA2G12A	ENSG00000123739|ENST00000243501|PLA2G12A	ENSG00000123739|ENST00000243501|PLA2G12A	MULTI-MSMS	A375_MHC_IP_R1	1	392.918701171875	3	391.216768	1170.62847	0.22858	8.9425E-05	-0.13488	-5.2767E-05	0.093702	3.6658E-05	391.21668036911484	20.309	0.8643	20.309	19.877	20.742	0					66	16	6	0	0	0	0.7154	1	5156	5156		5.4027	5.4027	1	134060000			57542	3858	41921	42252	56173	56173					0.049985678202801864
VELLIIRPAAT	11	Unmodified	_VELLIIRPAAT_					0	0	0		ENSG00000151012|ENST00000280612|SLC7A11	ENSG00000151012|ENST00000280612|SLC7A11	ENSG00000151012|ENST00000280612|SLC7A11	MSMS	A375_MHC_IP_R1	1	399.65069580078125	3	399.251813	1194.73361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.0108	1	9.0108	8.5108	9.5108	0								0	0	0	0.16351	1	2061	2061		0.45452	0.24766	1				57543	5874	41922	42253	56174	56174					0.14403109016711824
VELLRGLEGW	10	Unmodified	_VELLRGLEGW_					0	0	0		ENST00000349496.9_1_3:41281150-41281234:+|nuORF	ENST00000349496.9_1_3:41281150-41281234:+|nuORF	ENST00000349496.9_1_3:41281150-41281234:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	391.6205749511719	3	391.220513	1170.63971	0.22817	8.9266E-05	0.093834	3.671E-05	0.32201	0.00012598	391.2204633371809	40.688	0.40418	40.688	40.509	40.913	0					11	7	2	0	0	0	0.67901	1	14029	14029		14.957	2.7824	1	4747000			57544	10921	41923	42254	56175	56175					0.06121389914437714
VELLRLLL	8	Unmodified	_VELLRLLL_					0	0	0		ENST00000579140.5_1_17:9846551-9939763:-|nuORF;ENST00000583882.5_1_17:9820322-9862588:-|nuORF;ENST00000578655.1_1_17:9846551-9939756:-|nuORF	ENST00000579140.5_1_17:9846551-9939763:-|nuORF	ENST00000579140.5_1_17:9846551-9939763:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	969.6376953125	1	968.650279	967.643003	-0.073656	-7.1347E-05	-2.1982	-0.0021293	-2.2719	-0.0022007	968.6492906775945	122.58	0.40401	122.96	122.67	123.07	0.37661					9	7	2	0	0	0	0.7779	1	46934	46934		2.5775	0	1	196230000			57545	13656	41924	42255	56176	56176					0.1578868475909303
VELLRYAMR	9	Unmodified	_VELLRYAMR_					0	0	0		nc|ENSG00000155966|P51816-7|AFF2;nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-3|AFF2;nc|ENSG00000155966|P51816-5|AFF2;ENSG00000155966|ENST00000370460|AFF2	nc|ENSG00000155966|P51816-7|AFF2	nc|ENSG00000155966|P51816-7|AFF2	MULTI-SECPEP	A375_MHC_IP_R2	2	383.97900390625	3	384.218226	1149.63285	-0.61921	-0.00023791	3.2094	0.0012331	2.5902	0.0009952	384.2193851467602	28.555	0.25326	29.252	29.028	29.282	0.69687					6	4	2	0	0	0	0.73363	1	9845	9845		7.1017	0	1	18275000			57546	6167	41925	42256	56177	56177					0.06401753762179396
VELRHLLEI	9	Unmodified	_VELRHLLEI_					0	0	0		ENSG00000137494|ENST00000533342|ANKRD42	ENSG00000137494|ENST00000533342|ANKRD42	ENSG00000137494|ENST00000533342|ANKRD42	MULTI-SECPEP	A375_MHC_IP_R2	2	374.6206359863281	3	374.560758	1120.66044	-0.036391	-1.3631E-05	0.22434	8.403E-05	0.18795	7.0399E-05	374.56103068464387	28.336	0.20276	29.015	28.909	29.112	0.67857					5	3	2	0	0	0	0.73926	1	9798	9798		17.443	3.0373	1	1642700			57547	4887	41926	42257	56178	56178					0.10493980294063476
VELRHLLEI	9	Unmodified	_VELRHLLEI_					0	0	0		ENSG00000137494|ENST00000533342|ANKRD42	ENSG00000137494|ENST00000533342|ANKRD42	ENSG00000137494|ENST00000533342|ANKRD42	MULTI-MATCH	A375_MHC_IP_R1	1		3	374.560758	1120.66044	-0.14558	-5.4528E-05	-0.078949	-2.9571E-05	-0.22453	-8.4099E-05	374.8947885668811	29.25	0.20342	29.25	29.149	29.353	0	0.11748	-0.00025967	NaN	17.443	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2163500			57548	4887	41926	42257							0.10493980294063476
VELRKLLSSY	10	Unmodified	_VELRKLLSSY_					0	0	0			REV__RUNDC1|p.P380S|1|0.53|ENSG00000198863|chr17:42991012-42991012|C/T|missense_variant	REV__RUNDC1|p.P380S|1|0.53|ENSG00000198863|chr17:42991012-42991012|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	604.5145263671875	2	604.355888	1206.69722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.621	1	98.621	98.121	99.121	0								0	0	0	0.15158	1	36233	36233		14.838	5.4551	1		+		57549	27902	41927	42258	56179	56179					0.10214232120006272
VELRLSER	8	Unmodified	_VELRLSER_					0	0	0			REV__ENSG00000197122|ENST00000373578|SRC	REV__ENSG00000197122|ENST00000373578|SRC	MULTI-SECPEP	A375_MHC_IP_R1	1	500.68182373046875	2	501.290548	1000.56654	-0.82585	-0.00041399	-0.757	-0.00037948	-1.5829	-0.00079347	501.2900230320319	124.37	0.55364	124.37	123.84	124.39	0					18	10	2	0	0	0	0.972	1	46488	46488		5.2307	0	1	12165000	+		57550	22257	41928	42259	56180	56180					0.06628261191792717
VELRNVIKKK	10	Unmodified	_VELRNVIKKK_					0	0	0			REV__ENSG00000171914|ENST00000636159|TLN2	REV__ENSG00000171914|ENST00000636159|TLN2	MSMS	A375_MHC_IP_R1	1	409.6117248535156	3	409.602957	1225.78704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.876	1	31.876	31.376	32.376	0								0	0	0	0.15626	1	10247	10247		0.50596	0.051438	1		+		57551	21108	41929	42260	56181	56181					0.18317906519200733
VELRRQREREQ	11	Unmodified	_VELRRQREREQ_					0	0	0			REV__ENSG00000108829|ENST00000225972|LRRC59	REV__ENSG00000108829|ENST00000225972|LRRC59	MULTI-SECPEP	A375_MHC_IP_R1	1	500.1339111328125	3	500.278083	1497.81242	-0.40495	-0.00020259	-0.88511	-0.0004428	-1.2901	-0.00064539	500.2789228698488	55.07	0.20143	55.07	54.975	55.177	0					5	3	2	0	0	0	0.99916	1	19695	19695		4.4062	0	1	662930	+		57552	17558	41930	42261	56182	56182					0.08342729303672058
VELRVLALP	9	Unmodified	_VELRVLALP_					0	0	0		ENSG00000173621|ENST00000309602|LRFN4	ENSG00000173621|ENST00000309602|LRFN4	ENSG00000173621|ENST00000309602|LRFN4	MULTI-MSMS	A375_MHC_IP_R2	2	505.7239074707031	2	505.32386	1008.63317	-0.60666	-0.00030656	1.0022	0.00050645	0.39556	0.00019989	505.3243099149846	118.21	0.8073	118.82	118.54	119.35	0.60909					36	15	4	0	0	0	0.05754	1	44817	44817		61.357	0	1	46282000			57553	7816	41931	42262	56183	56183					0.12919496753693238
VELRWRRWRIR	11	Unmodified	_VELRWRRWRIR_					0	0	0			REV__ENST00000256858.10_2_18:59854532-59854781:+|nuORF	REV__ENST00000256858.10_2_18:59854532-59854781:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	406.9522399902344	4	407.245747	1624.95388	-0.12966	-5.2803E-05	-1.275	-0.00051926	-1.4047	-0.00057206	407.2449433856529	35.981	0.5596	35.981	35.676	36.236	0					20	10	3	0	0	0	1.0015	1	11985	11985		0.073264	0	1	2208800	+		57554	23155	41932	42263	56184	56184					0.16640192187469438
VELRWRRWRIR	11	Unmodified	_VELRWRRWRIR_					0	0	0			REV__ENST00000256858.10_2_18:59854532-59854781:+|nuORF	REV__ENST00000256858.10_2_18:59854532-59854781:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		4	407.245747	1624.95388	-0.18668	-7.6025E-05	-1.2767	-0.00051994	-1.4634	-0.00059597	407.4960271797176	34.819	0.50513	35.583	35.324	35.829	0.76338	-0.19917	-1.0003E-06	NaN	0.073264	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2590100	+		57555	23155	41932	42263							0.16640192187469438
VELSENNSPW	10	Unmodified	_VELSENNSPW_					0	0	0		nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENSG00000146555|ENST00000404826|SDK1	nc|ENSG00000146555|Q7Z5N4-3|SDK1	nc|ENSG00000146555|Q7Z5N4-3|SDK1	MSMS	A375_MHC_IP_R1	1	587.7272338867188	2	587.772385	1173.53022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.408	1	88.408	87.908	88.908	0								0	0	0	0.15207	1	32454	32454		13.906	1.6654	1				57556	5628	41933	42264	56185	56185					-0.049606604955670264
VELSQRAEL	9	Unmodified	_VELSQRAEL_					0	0	0			REV__ENSG00000138031|ENST00000679454|ADCY3	REV__ENSG00000138031|ENST00000679454|ADCY3	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1870727539062	2	522.787838	1043.56112	-0.44322	-0.00023171	-0.77339	-0.00040432	-1.2166	-0.00063603	522.7876110328405	46.428	0.4072	47.194	46.957	47.364	0.76519					16	7	3	0	0	0	0.38578	1	17415	17415		34.402	0	1	2471100	+		57557	19057	41934	42265	56186	56186					0.04108537609317864
VELSRKVIQ	9	Unmodified	_VELSRKVIQ_					0	0	0			REV__ENSG00000136936|ENST00000375128|XPA	REV__ENSG00000136936|ENST00000375128|XPA	MULTI-MSMS	A375_MHC_IP_R1	1	357.93084716796875	3	357.888874	1070.64479	0.26171	9.3662E-05	-0.29402	-0.00010523	-0.032311	-1.1564E-05	357.88877388179236	45.662	0.70887	45.662	45.334	46.043	0					27	13	3	0	0	0	0.76628	1	16090	16090		1.0715	0	1	7302800	+		57558	18976	41935	42266	56187	56187					0.11229693777045213
VELSRLFRLKF	11	Unmodified	_VELSRLFRLKF_					0	0	0		ENST00000460813.5_1_3:113755834-113765458:-|nuORF	ENST00000460813.5_1_3:113755834-113765458:-|nuORF	ENST00000460813.5_1_3:113755834-113765458:-|nuORF	MSMS	A375_MHC_IP_R1	1	704.493896484375	2	704.427179	1406.8398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.336	1	82.336	81.836	82.836	0								0	0	0	0.16297	1	30109	30109		3.2813	1.9518	1				57559	12174	41936	42267	56188	56188					0.1526586458201109
VELSRWLLRWL	11	Unmodified	_VELSRWLLRWL_					0	0	0			REV__ENST00000264649.10_1_17:40610912-40612943:+|nuORF	REV__ENST00000264649.10_1_17:40610912-40612943:+|nuORF	MSMS	A375_MHC_IP_R2	2	735.8016357421875	2	735.932628	1469.8507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.617	1	97.373	96.873	97.873	0.75586								0	0	0	0.16312	1	36680	36680		2.4985	1.3051	1		+		57560	23239	41937	42268	56189	56189					0.13457266956311287
VELSVELLSPP	11	Unmodified	_VELSVELLSPP_					0	0	0		ENST00000602367.1_1_6:52531422-52531482:+|nuORF	ENST00000602367.1_1_6:52531422-52531482:+|nuORF	ENST00000602367.1_1_6:52531422-52531482:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	395.62640380859375	3	394.892062	1181.65436	0.11251	4.443E-05	0.16959	6.6969E-05	0.2821	0.0001114	394.89204135788333	45.929	0.45708	45.929	45.687	46.144	0					20	8	3	0	0	0	0.63149	1	16093	16093		20.871	3.8226	1	5184600			57561	13880	41938	42269	56190	56190					0.070794172719161
VELSVELLSPP	11	Unmodified	_VELSVELLSPP_					0	0	0		ENST00000602367.1_1_6:52531422-52531482:+|nuORF	ENST00000602367.1_1_6:52531422-52531482:+|nuORF	ENST00000602367.1_1_6:52531422-52531482:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	395.2921142578125	3	394.892062	1181.65436	-0.24848	-9.8124E-05	0.18718	7.3915E-05	-0.061304	-2.4208E-05	394.8920526692311	45.056	0.66226	45.825	45.492	46.154	0.7691					23	12	3	0	0	0	0.57887	1	16818	16818		24.957	7.9085	1	5264200			57562	13880	41938	42269	56191	56191					0.070794172719161
VELSVELLSPP	11	Unmodified	_VELSVELLSPP_					0	0	0		ENST00000602367.1_1_6:52531422-52531482:+|nuORF	ENST00000602367.1_1_6:52531422-52531482:+|nuORF	ENST00000602367.1_1_6:52531422-52531482:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	394.892062	1181.65436	-0.24848	-9.8124E-05	0.18718	7.3915E-05	-0.061304	-2.4208E-05	394.8920526692311	45.056	0.66226	45.825	45.492	46.154	0.7691	-0.051883	1.2579E-05	NaN	24.957	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5264200			57563	13880	41938	42269							0.070794172719161
VELTNIQKKY	10	Unmodified	_VELTNIQKKY_					0	0	0		CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000124177|ENST00000373233|CHD6;ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENST00000569225.5_1_16:53269177-53281416:+|nuORF	CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;ENSG00000124177|ENST00000373233|CHD6;ENSG00000177200|ENST00000447540|CHD9	ENSG00000177200|ENST00000447540|CHD9	MULTI-MSMS	A375_MHC_IP_R1	1	412.97137451171875	3	412.571322	1234.69214	0.23516	9.7021E-05	-0.12702	-5.2403E-05	0.10815	4.4618E-05	412.5711852102321	33.522	0.5067	33.522	33.291	33.798	0					21	9	3	0	0	0	0.067551	1	10961	10961		70.929	38.031	1	7521300			57564	8069;2228;387;3877	41939	42270	56192	56192					0.08417928257381391
VELTNIQKKY	10	Unmodified	_VELTNIQKKY_					0	0	0		CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000124177|ENST00000373233|CHD6;ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENST00000569225.5_1_16:53269177-53281416:+|nuORF	CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;ENSG00000124177|ENST00000373233|CHD6;ENSG00000177200|ENST00000447540|CHD9	ENSG00000177200|ENST00000447540|CHD9	MULTI-MSMS	A375_MHC_IP_R2	2	412.97125244140625	3	412.571322	1234.69214	-0.047275	-1.9505E-05	0.10214	4.2142E-05	0.054869	2.2637E-05	412.57124731188236	32.74	0.50791	33.476	33.265	33.773	0.73691					21	9	4	0	0	0	0.10365	1	11678	11678		62.869	37.987	1	5629400			57565	8069;2228;387;3877	41939	42270	56193	56193					0.08417928257381391
VELTSSKRH	9	Unmodified	_VELTSSKRH_					0	0	0			REV__nc|ENSG00000120656|Q16514-2|TAF12	REV__nc|ENSG00000120656|Q16514-2|TAF12	MULTI-SECPEP	A375_MHC_IP_R2	2	352.9813537597656	3	352.864729	1055.57236	-0.23976	-8.4603E-05	0.086745	3.0609E-05	-0.15301	-5.3993E-05	352.86475025948744	31.912	0.60852	32.649	32.3	32.909	0.73691					20	11	3	0	0	0	0.4261	1	11189	11189		28.495	10.121	1	3844300	+		57566	18130	41940	42271	56194	56194					0.046793597034593404
VELTVVQRF	9	Unmodified	_VELTVVQRF_					0	0	0		ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENSG00000087008|ENST00000356406|ACOX3	ENSG00000087008|ENST00000356406|ACOX3	MULTI-SECPEP	A375_MHC_IP_R1	1	545.7020874023438	2	545.816399	1089.61824	-0.62515	-0.00034122	-0.41133	-0.00022451	-1.0365	-0.00056573	545.8162913706071	76.731	0.55994	76.731	76.421	76.981	0					17	10	2	0	0	0	0.20451	1	27926	27926		49.554	15.153	1	3636600			57567	1849	41941	42272	56195	56195					0.07702004885709357
VELTVVQRF	9	Unmodified	_VELTVVQRF_					0	0	0		ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENSG00000087008|ENST00000356406|ACOX3	ENSG00000087008|ENST00000356406|ACOX3	MULTI-SECPEP	A375_MHC_IP_R2	2	546.2033081054688	2	545.816399	1089.61824	-0.78718	-0.00042966	-0.26098	-0.00014244	-1.0482	-0.0005721	545.816390100212	75.856	0.6087	76.597	76.334	76.943	0.74052					22	11	3	0	0	0	0.61452	1	28728	28728		20.415	3.3016	1	4905100			57568	1849	41941	42272	56196	56196					0.07702004885709357
VELVEFISPK	10	Unmodified	_VELVEFISPK_					0	0	0		nc|ENSG00000151092|Q96IV0-3|NGLY1;nc|ENSG00000151092|Q96IV0-5|NGLY1;nc|ENSG00000151092|Q96IV0-2|NGLY1;ENSG00000151092|ENST00000280700|NGLY1	nc|ENSG00000151092|Q96IV0-3|NGLY1	nc|ENSG00000151092|Q96IV0-3|NGLY1	MULTI-SECPEP	A375_MHC_IP_R1	1	387.6210632324219	3	387.556902	1159.64888	-0.045257	-1.754E-05	0.41238	0.00015982	0.36712	0.00014228	387.55712965992797	30.796	1.0125	30.796	30.402	31.414	0					39	19	3	0	0	0	0.88361	1	9916	9916		11.518	1.3673	1	3417200			57569	5878	41942	42273	56197	56197					0.0754373848008072
VELVHQAEED	10	Unmodified	_VELVHQAEED_					0	0	0			REV__ENST00000477222.5_1_2:238402069-238415922:+|nuORF	REV__ENST00000477222.5_1_2:238402069-238415922:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	584.197265625	2	584.777667	1167.54078	-0.40221	-0.00023521	-1.9754	-0.0011552	-2.3776	-0.0013904	585.2774285440555	48.221	0.30095	48.979	48.829	49.13	0.75737					7	5	2	0	0	0	0.88918	1	18139	18139		13.042	0	1	758620	+		57570	17902	41943	42274	56198	56198					-0.03628677841152239
VELWQVLI	8	Unmodified	_VELWQVLI_					0	0	0		ENST00000397747.4_1_9:5510780-5534769:+|nuORF	ENST00000397747.4_1_9:5510780-5534769:+|nuORF	ENST00000397747.4_1_9:5510780-5534769:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	500.4746398925781	2	500.29731	998.580068	-0.61481	-0.00030759	-0.2301	-0.00011512	-0.84491	-0.00042271	500.29727630248846	90.631	0.5593	90.631	90.437	90.997	0					13	10	2	0	0	0	0.91495	1	33427	33427		12.532	0	1	972350			57571	11509	41944	42275	56199	56199					0.08072118971040254
VELWVLTFF	9	Unmodified	_VELWVLTFF_					0	0	0		ENST00000461409.1_1_7:18542099-18542232:+|nuORF;ENST00000430454.5_1_7:18535437-18542232:+|nuORF	ENST00000461409.1_1_7:18542099-18542232:+|nuORF	ENST00000461409.1_1_7:18542099-18542232:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	384.98199462890625	3	385.214587	1152.62193	-0.10335	-3.9812E-05	-0.59143	-0.00022783	-0.69478	-0.00026764	385.21444957220825	41.406	0.35606	41.406	41.114	41.47	0					9	6	2	0	0	0	0.78348	1	14230	14230		2.4985	0	1	786700			57572	11857	41945	42276	56200	56200					0.05172674659547738
VELYARMFLKF	11	Unmodified	_VELYARMFLKF_					0	0	0			REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF	REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	709.5403442382812	2	708.889041	1415.76353	-0.66383	-0.00047058	2.1351	0.0015135	1.4712	0.0010429	708.8907685961134	95.47	0.45484	95.47	95.312	95.767	0					14	8	2	0	0	0	0.99738	1	35068	35068		5.2969	4.3346	1	3742800	+		57573	16437	41946	42277	56201	56201					0.07227724690369541
VEMADGYTV	9	Unmodified	_VEMADGYTV_					0	0	0		ENST00000421896.1_1_6:7481658-7482147:-|nuORF	ENST00000421896.1_1_6:7481658-7482147:-|nuORF	ENST00000421896.1_1_6:7481658-7482147:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	493.1208190917969	2	492.720775	983.426998	-0.24045	-0.00011847	0.82559	0.00040679	0.58514	0.00028831	492.7211540996591	92.017	0.5556	92.017	91.756	92.312	0					17	10	2	0	0	0	0.4867	1	33845	33845		20.454	0	1	1404500			57574	11742	41947	42278	56202	56202					-0.06537864207723487
VEMCVRPSYL	10	Unmodified	_VEMCVRPSYL_					0	0	0		ENST00000375245.8_1_10:32096390-32096486:-|nuORF	ENST00000375245.8_1_10:32096390-32096486:-|nuORF	ENST00000375245.8_1_10:32096390-32096486:-|nuORF	MSMS	A375_MHC_IP_R2	2	598.7920532226562	2	598.793752	1195.57295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.422	1	86.158	85.658	86.658	0.73601								0	0	0	0.15332	1	32475	32475		10.074	0.6908	1				57575	11267	41948	42279	56203	56203					-0.017013049633305855
VEMDFYIMMV	10	Unmodified	_VEMDFYIMMV_					0	0	0			REV__nc|ENSG00000160746|Q9NW15-4|ANO10	REV__nc|ENSG00000160746|Q9NW15-4|ANO10	MSMS	A375_MHC_IP_R2	2	639.5819702148438	2	639.284371	1276.55419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.772	1	89.504	89.004	90.004	0.7318								0	0	0	0.15435	1	33784	33784		6.7232	0.51738	1		+		57576	20182	41949	42280	56204	56204					-0.07302602649428991
VEMGFSKA	8	Unmodified	_VEMGFSKA_					0	0	0			REV__tr|U7STE9|U7STE9_FUSNUD-3-phosphoglyceratedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01033PE=3SV=1	REV__tr|U7STE9|U7STE9_FUSNUD-3-phosphoglyceratedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01033PE=3SV=1	MSMS	A375_MHC_IP_R2	2	434.6125793457031	2	434.715296	867.416039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.47	1	138.56	138.06	139.06	0.083969								0	0	0	0.16876	1	54299	54299		5.7604	0	1		+		57577	28481	41950	42281	56205	56205					-0.022972217913661552
VEMKMRPYNHR	11	Unmodified	_VEMKMRPYNHR_					0	0	0		ENSG00000116147|ENST00000367674|TNR;nc|ENSG00000116147|Q92752-2|TNR	ENSG00000116147|ENST00000367674|TNR	ENSG00000116147|ENST00000367674|TNR	MSMS	A375_MHC_IP_R1	1	487.4793701171875	3	487.579829	1459.71766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.503	1	42.503	42.003	43.003	0								0	0	0	0.16313	1	14736	14736		2.4348	0	1				57578	3376	41951	42282	56206	56206					0.0061875623650848866
VEMKMRPYNHR	11	Unmodified	_VEMKMRPYNHR_					0	0	0		ENSG00000116147|ENST00000367674|TNR;nc|ENSG00000116147|Q92752-2|TNR	ENSG00000116147|ENST00000367674|TNR	ENSG00000116147|ENST00000367674|TNR	MSMS	A375_MHC_IP_R1	1	487.4796447753906	3	487.579829	1459.71766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.314	1	44.314	43.814	44.814	0								0	0	0	0.1628	1	15455	15455		4.1166	1.2733	1				57579	3376	41951	42282	56207	56207					0.0061875623650848866
VEMLPGKRW	9	Unmodified	_VEMLPGKRW_					0	0	0		ENSG00000129315|ENST00000261900|CCNT1	ENSG00000129315|ENST00000261900|CCNT1	ENSG00000129315|ENST00000261900|CCNT1	MULTI-SECPEP	A375_MHC_IP_R2	2	372.6294860839844	3	372.539188	1114.59573	0.43772	0.00016307	-0.31395	-0.00011696	0.12377	4.611E-05	372.5390364970488	45.645	0.50504	46.41	45.997	46.503	0.76519					11	9	2	0	0	0	0.74412	1	17041	17041		6.6304	2.3011	1	662690			57580	4186	41952	42283	56208	56208					0.043020822164407946
VEMMVMLI	8	Unmodified	_VEMMVMLI_					0	0	0			REV__DSG4|p.V18M|1|0.23|ENSG00000175065|chr18:31385139-31385139|G/A|missense_variant	REV__DSG4|p.V18M|1|0.23|ENSG00000175065|chr18:31385139-31385139|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	483.647216796875	2	483.24706	964.479567	-0.4796	-0.00023177	0.15784	7.6276E-05	-0.32177	-0.00015549	483.24779998368575	84.536	0.5555	85.272	84.968	85.523	0.73602					16	10	2	0	0	0	0.90224	1	32159	32159		19.439	1.304	1	1450100	+		57581	16041	41953	42284	56209	56209					-0.004093206701213603
VEMPPGDSDH	10	Unmodified	_VEMPPGDSDH_					0	0	0		ENSG00000196152|ENST00000342483|ZNF79	ENSG00000196152|ENST00000342483|ZNF79	ENSG00000196152|ENST00000342483|ZNF79	MULTI-MSMS	A375_MHC_IP_R2	2	542.6240844726562	2	542.224214	1082.43387	-0.80065	-0.00043413	-0.19684	-0.00010673	-0.99749	-0.00054086	542.2242288055726	103.44	0.35637	104.21	104.09	104.45	0.76428					15	6	3	0	0	0	0.70496	1	39236	39236		10.074	3.7198	1	1146300			57582	9006	41954	42285	56210	56210					-0.10404551327178524
VEMQYMSWRQR	11	Unmodified	_VEMQYMSWRQR_					0	0	0			REV__nc|ENSG00000198003|A5D8V7-2|ODAD3	REV__nc|ENSG00000198003|A5D8V7-2|ODAD3	MSMS	A375_MHC_IP_R1	1	757.3526611328125	2	757.35557	1512.69659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.751	1	66.751	66.251	67.251	0								0	0	0	0.16302	1	24181	24181		2.9952	1.3426	1		+		57583	22335	41955	42286	56211	56211					-0.039252538630307754
VEMYDPTRNEW	11	Oxidation (M)	_VEM(Oxidation (M))YDPTRNEW_		VEM(1)YDPTRNEW		VEM(110)YDPTRNEW	0	0	1		ENSG00000116679|ENST00000367498|IVNS1ABP;ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF	ENSG00000116679|ENST00000367498|IVNS1ABP	ENSG00000116679|ENST00000367498|IVNS1ABP	MULTI-MSMS	A375_MHC_IP_R1	1	728.7130737304688	2	728.314091	1454.61363	-0.49633	-0.00036149	-0.015779	-1.1492E-05	-0.51211	-0.00037298	728.3141625992532	55.804	0.86435	55.804	55.33	56.194	0					50	16	4	0	0	0	0.00037325	1	19862	19862		112.95	97.698	1	7895300			57584	3416	41956	42287	56212	56212		173			-0.09549292110045826
VEMYDPTRNEW	11	Oxidation (M)	_VEM(Oxidation (M))YDPTRNEW_		VEM(1)YDPTRNEW		VEM(120)YDPTRNEW	0	0	1		ENSG00000116679|ENST00000367498|IVNS1ABP;ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF	ENSG00000116679|ENST00000367498|IVNS1ABP	ENSG00000116679|ENST00000367498|IVNS1ABP	MULTI-MSMS	A375_MHC_IP_R2	2	728.7136840820312	2	728.314091	1454.61363	-0.91585	-0.00066702	0.11302	8.2313E-05	-0.80283	-0.00058471	728.3141539843173	55.16	0.91574	55.911	55.523	56.439	0.75075					46	17	3	0	0	0	0.0003057	1	20763	20763		122.57	110.4	1	7368500			57585	3416	41956	42287	56213	56213		173			-0.09549292110045826
VEMYDPTRNEW	11	Unmodified	_VEMYDPTRNEW_					0	0	0		ENSG00000116679|ENST00000367498|IVNS1ABP;ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF	ENSG00000116679|ENST00000367498|IVNS1ABP	ENSG00000116679|ENST00000367498|IVNS1ABP	MULTI-MSMS	A375_MHC_IP_R2	2	720.7164306640625	2	720.316634	1438.61871	-0.74067	-0.00053352	0.16755	0.00012069	-0.57312	-0.00041283	720.3168284900948	73.683	0.81507	74.418	73.99	74.805	0.73541					42	15	4	0	0	0	8.9997E-06	2	27930	27930;28043		150.06	131.69	1	12008000			57586	3416	41956	42288	56214;56215	56214					-0.08304988247414258
VEMYDPTRNEW	11	Unmodified	_VEMYDPTRNEW_					0	0	0		ENSG00000116679|ENST00000367498|IVNS1ABP;ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF	ENSG00000116679|ENST00000367498|IVNS1ABP	ENSG00000116679|ENST00000367498|IVNS1ABP	MULTI-MATCH	A375_MHC_IP_R1	1		2	720.316634	1438.61871	-0.57419	-0.0004136	0.29162	0.00021006	-0.28257	-0.00020354	720.3168861603499	74.278	0.76035	74.278	73.943	74.704	0	-0.070269	9.1289E-05	NaN	150.06	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9927800			57587	3416	41956	42288							-0.08304988247414258
VENATPDYA	9	Unmodified	_VENATPDYA_					0	0	0		nc|ENSG00000185049|Q9H3P2-7|NELFA;ENST00000467661.5_1_4:1985048-1988196:-|nuORF;ENSG00000185049|ENST00000382882|NELFA;ENST00000463820.5_1_4:1985048-1993691:-|nuORF	nc|ENSG00000185049|Q9H3P2-7|NELFA	nc|ENSG00000185049|Q9H3P2-7|NELFA	MULTI-SECPEP	A375_MHC_IP_R1	1	490.6399841308594	2	490.221997	978.429441	-0.41441	-0.00020315	-0.30979	-0.00015187	-0.7242	-0.00035502	490.2216847464215	53.148	0.50714	53.148	52.946	53.453	0					15	9	2	0	0	0	0.67483	1	19017	19017		20.454	2.3186	1	1264200			57588	8636	41957	42289	56216	56216					-0.06063692478426219
VENDFEVF	8	Unmodified	_VENDFEVF_					0	0	0			REV__ENSG00000077312|ENST00000243563|SNRPA	REV__ENSG00000077312|ENST00000243563|SNRPA	MULTI-SECPEP	A375_MHC_IP_R1	1	500.1278381347656	2	499.726915	997.439277	-0.5844	-0.00029204	1.2214	0.00061034	0.63695	0.0003183	499.728138609422	85.304	0.45741	85.304	85.056	85.513	0					14	7	2	0	0	0	0.8211	1	31290	31290		23.148	0	1	1135400	+		57589	16692	41958	42290	56217	56217					-0.05954504473038469
VENDGGAGDDF	11	Unmodified	_VENDGGAGDDF_					0	0	0			REV__ENSG00000161057|ENST00000292644|PSMC2	REV__ENSG00000161057|ENST00000292644|PSMC2	MULTI-MSMS	A375_MHC_IP_R2	2	548.6149291992188	2	548.2149	1094.41525	-0.6566	-0.00035996	2.4055	0.0013187	1.7489	0.00095877	548.2158512157362	86.773	0.55715	87.506	87.255	87.812	0.733					16	10	2	0	0	0	0.73459	1	33009	33009		4.5289	0.19963	1	1120400	+		57590	20200	41959	42291	56218	56218					-0.12818389697372368
VENDRLENF	9	Unmodified	_VENDRLENF_					0	0	0		RNF19A|p.S771F|1|0.38|ENSG00000034677|chr8:100258761-100258761|G/A|missense_variant	RNF19A|p.S771F|1|0.38|ENSG00000034677|chr8:100258761-100258761|G/A|missense_variant	RNF19A|p.S771F|1|0.38|ENSG00000034677|chr8:100258761-100258761|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	567.689453125	2	568.272552	1134.53055	-0.24347	-0.00013836	-2.0325	-0.001155	-2.276	-0.0012934	568.7712176375428	68.458	0.35478	69.193	68.968	69.323	0.73512					10	6	2	0	0	0	0.71341	1	25942	25942		13.042	8.7132	1	771360			57591	29085	41960	42292	56219	56219					-0.03133240775741797
VENEAMCQY	9	Unmodified	_VENEAMCQY_					0	0	0			REV__ENSG00000144857|ENST00000682979|BOC	REV__ENSG00000144857|ENST00000682979|BOC	MSMS	A375_MHC_IP_R1	1	543.7005615234375	2	543.715167	1085.41578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.703	1	40.703	40.203	41.203	0								0	0	0	0.15486	1	14004	14004		7.2892	1.5288	1		+		57592	19452	41961	42293	56220	56220					-0.12351009573512783
VENFAFGMLI	10	Unmodified	_VENFAFGMLI_					0	0	0			REV__ENSG00000100191|ENST00000266086|SLC5A4	REV__ENSG00000100191|ENST00000266086|SLC5A4	MULTI-SECPEP	A375_MHC_IP_R1	1	381.6365966796875	3	380.863449	1139.56852	0.22925	8.7313E-05	1.8971	0.00072255	2.1264	0.00080987	380.8643339294602	23.252	0.2557	23.252	23.176	23.432	0					6	4	2	0	0	0	0.93404	1	6350	6350		2.086	0	1	2910300	+		57593	17057	41962	42294	56221	56221					0.004315538854143597
VENFLPPPN	9	Unmodified	_VENFLPPPN_					0	0	0			REV__IQCA1|p.G239D|1|0.24|ENSG00000132321|chr2:236486833-236486833|C/T|missense_variant	REV__IQCA1|p.G239D|1|0.24|ENSG00000132321|chr2:236486833-236486833|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	513.6663818359375	2	513.766374	1025.5182	0.0063921	3.284E-06	-0.26117	-0.00013418	-0.25478	-0.0001309	513.7660590217602	45.074	1.0129	45.074	44.471	45.484	0					35	19	3	0	0	0	0.60101	1	15828	15828		14.838	0.25658	1	1881500	+		57594	18645	41963	42295	56222	56222					0.0064576755189591495
VENFVLRV	8	Unmodified	_VENFVLRV_					0	0	0		nc|ENSG00000223501|Q8N1B4-2|VPS52;ENSG00000223501|ENST00000445902|VPS52;ENST00000461743.1_1_6:33231479-33231808:-|nuORF;ENST00000471309.1_1_6:33231312-33232261:-|nuORF	nc|ENSG00000223501|Q8N1B4-2|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	MULTI-MSMS	A375_MHC_IP_R1	1	488.68426513671875	2	488.284734	974.554916	-0.25105	-0.00012258	0.18886	9.2218E-05	-0.062185	-3.0364E-05	488.284847916925	59.726	2.0357	59.726	59.346	61.382	0					59	39	3	0	0	0	0.23604	1	21456	21456		64.236	5.5575	1	16373000			57595	9685	41964	42296	56223	56223					0.06662064168483539
VENHTACH	8	Unmodified	_VENHTACH_					0	0	0		ENSG00000135346|ENST00000627148|CGA	ENSG00000135346|ENST00000627148|CGA	ENSG00000135346|ENST00000627148|CGA	MSMS	A375_MHC_IP_R1	1	455.6973876953125	2	455.695426	909.3763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.98	1	29.98	29.48	30.48	0								0	0	0	0.16876	1	9465	9465		9.3474	0.75416	1				57596	4673	41965	42297	56224	56224					-0.08201348742090886
VENKKIKNF	9	Unmodified	_VENKKIKNF_					0	0	0		tr|U7SQS1|U7SQS1_FUSNUDiaminopropionateammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01557PE=4SV=1	tr|U7SQS1|U7SQS1_FUSNUDiaminopropionateammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01557PE=4SV=1	tr|U7SQS1|U7SQS1_FUSNUDiaminopropionateammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01557PE=4SV=1	MSMS	A375_MHC_IP_R2	2	373.9176940917969	3	373.888874	1118.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.703	1	25.347	24.847	25.847	0.64368								0	0	0	0.15486	1	8157	8157		4.897	0.36815	1				57597	29593	41966	42298	56225	56225					0.09021693777026485
VENLPRTVI	9	Unmodified	_VENLPRTVI_					0	0	0		ENST00000461845.1_1_2:85822886-85823939:+|nuORF;ENSG00000168894|ENST00000306368|RNF181	ENST00000461845.1_1_2:85822886-85823939:+|nuORF	ENST00000461845.1_1_2:85822886-85823939:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	521.2084350585938	2	520.808574	1039.60259	-0.48359	-0.00025186	0.1471	7.6609E-05	-0.3365	-0.00017525	520.8085659478154	57.441	0.5596	57.441	57.109	57.669	0					15	10	2	0	0	0	0.09145	1	20601	20601		69.338	32.264	1	3690000			57598	7354	41967	42299	56226	56226					0.08437718368668357
VENLPRTVI	9	Unmodified	_VENLPRTVI_					0	0	0		ENST00000461845.1_1_2:85822886-85823939:+|nuORF;ENSG00000168894|ENST00000306368|RNF181	ENST00000461845.1_1_2:85822886-85823939:+|nuORF	ENST00000461845.1_1_2:85822886-85823939:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	521.2080078125	2	520.808574	1039.60259	-1.0178	-0.00053009	-0.52524	-0.00027355	-1.5431	-0.00080365	520.8087053354405	56.559	0.51126	57.309	57.101	57.612	0.75015					19	9	3	0	0	0	0.29257	1	21415	21415		53.317	13.078	1	2938700			57599	7354	41967	42299	56227	56227					0.08437718368668357
VENLWLDI	8	Unmodified	_VENLWLDI_					0	0	0		ENST00000338888.3_1_1:25291152-25291430:-|nuORF;ENST00000399916.5_1_1:25291100-25291430:-|nuORF	ENST00000338888.3_1_1:25291152-25291430:-|nuORF	ENST00000338888.3_1_1:25291152-25291430:-|nuORF	MSMS	A375_MHC_IP_R2	2	501.1784973144531	2	501.26875	1000.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.766	1	85.502	85.002	86.002	0.73601								0	0	0	0.16876	1	32224	32224		20.454	0	1				57600	10839	41968	42300	56228	56228					0.022706516946755073
VENLWLDI	8	Unmodified	_VENLWLDI_					0	0	0		ENST00000338888.3_1_1:25291152-25291430:-|nuORF;ENST00000399916.5_1_1:25291100-25291430:-|nuORF	ENST00000338888.3_1_1:25291152-25291430:-|nuORF	ENST00000338888.3_1_1:25291152-25291430:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	501.1091613769531	2	501.26875	1000.52295	-0.52823	-0.00026479	4.3463	0.0021787	3.8181	0.0019139	501.2700932793787	84.087	0.2052	84.826	84.663	84.868	0.73962					9	3	3	0	0	0	0.77651	1	31923	31923		34.102	0	1	663410			57601	10839	41968	42300	56229	56229					0.022706516946755073
VENNGVLSF	9	Unmodified	_VENNGVLSF_					0	0	0		ENSG00000134684|ENST00000373477|YARS1	ENSG00000134684|ENST00000373477|YARS1	ENSG00000134684|ENST00000373477|YARS1	MULTI-MSMS	A375_MHC_IP_R1	1	490.1476135253906	2	489.748182	977.481811	-0.33698	-0.00016503	-0.47094	-0.00023064	-0.80792	-0.00039568	489.7481459277932	87.503	0.66131	87.503	87.237	87.898	0					33	12	3	0	0	0	0.033557	1	32120	32120		71.922	23.576	1	2546000			57602	4594	41969	42301	56230	56230					-0.007831093448089632
VENNGVLSF	9	Unmodified	_VENNGVLSF_					0	0	0		ENSG00000134684|ENST00000373477|YARS1	ENSG00000134684|ENST00000373477|YARS1	ENSG00000134684|ENST00000373477|YARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	490.1480407714844	2	489.748182	977.481811	-0.42312	-0.00020722	0.33424	0.00016369	-0.088877	-4.3527E-05	489.74830542991674	86.801	0.76307	87.534	87.151	87.914	0.733					22	14	2	0	0	0	0.056023	1	32984	32984		75.761	23.492	1	3233700			57603	4594	41969	42301	56231	56231					-0.007831093448089632
VENNPAIKW	9	Unmodified	_VENNPAIKW_					0	0	0		ENSG00000001629|ENST00000265742|ANKIB1	ENSG00000001629|ENST00000265742|ANKIB1	ENSG00000001629|ENST00000265742|ANKIB1	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1848754882812	2	535.785099	1069.55564	-0.61958	-0.00033196	0.36475	0.00019543	-0.25483	-0.00013654	535.7852540468365	52.077	0.65982	52.077	51.778	52.438	0					16	12	2	0	0	0	0.16595	1	18487	18487		61.602	38.866	1	3769200			57604	849	41970	42302	56232	56232					0.023648588175319674
VENNPAIKW	9	Unmodified	_VENNPAIKW_					0	0	0		ENSG00000001629|ENST00000265742|ANKIB1	ENSG00000001629|ENST00000265742|ANKIB1	ENSG00000001629|ENST00000265742|ANKIB1	MULTI-SECPEP	A375_MHC_IP_R2	2	536.1845092773438	2	535.785099	1069.55564	-1.0122	-0.00054234	0.027706	1.4845E-05	-0.98453	-0.0005275	535.7850492597817	51.334	0.50766	52.086	51.813	52.321	0.75225					16	9	2	0	0	0	0.11887	1	19310	19310		71.708	44.079	1	2647300			57605	849	41970	42302	56233	56233					0.023648588175319674
VENNRLGYI	9	Unmodified	_VENNRLGYI_					0	0	0			REV__OR10A7|p.P287S|1|0.18|ENSG00000179919|chr12:55221883-55221883|C/T|missense_variant	REV__OR10A7|p.P287S|1|0.18|ENSG00000179919|chr12:55221883-55221883|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	539.6875610351562	2	539.288005	1076.56146	-0.95631	-0.00051573	-0.16106	-8.6858E-05	-1.1174	-0.00060259	539.2878946905805	70.944	0.60827	71.678	71.402	72.01	0.73421					29	11	3	0	0	0	0.65246	1	26861	26861		6.7232	0	1	14743000	+		57606	21587	41971	42303	56234	56234					0.026239573292059504
VENPTSIKL	9	Unmodified	_VENPTSIKL_					0	0	0		ENSG00000113716|ENST00000502717|HMGXB3	ENSG00000113716|ENST00000502717|HMGXB3	ENSG00000113716|ENST00000502717|HMGXB3	MULTI-SECPEP	A375_MHC_IP_R2	2	501.18682861328125	2	500.787307	999.560061	-0.94717	-0.00047433	2.7585	0.0013814	1.8114	0.0009071	501.2914031612666	54.039	0.91662	54.79	54.353	55.27	0.75105					25	17	2	0	0	0	0.36673	1	20348	20348		45.74	10.808	1	6689600			57607	3175	41972	42304	56235	56235					0.060263232404167866
VENQKLII	8	Unmodified	_VENQKLII_					0	0	0		nc|ENSG00000166900|Q13277-2|STX3	nc|ENSG00000166900|Q13277-2|STX3	nc|ENSG00000166900|Q13277-2|STX3	MULTI-MSMS	A375_MHC_IP_R1	1	479.8847961425781	2	478.792392	955.570232	-0.51324	-0.00024574	0.33976	0.00016268	-0.17348	-8.3061E-05	478.79252655875956	76.337	0.5055	76.337	76.067	76.572	0					19	9	3	0	0	0	0.76248	1	27802	27802		16.942	0	1	2262500			57608	14744	41973	42305	56236	56236					0.09066930965661868
VENQSDWYL	9	Unmodified	_VENQSDWYL_					0	0	0		ENSG00000165905|ENST00000401752|LARGE2;ENST00000528236.5_1_11:45945714-45947705:+|nuORF;nc|ENSG00000133424|O95461-2|LARGE1;ENSG00000133424|ENST00000397394|LARGE1	ENSG00000165905|ENST00000401752|LARGE2	ENSG00000165905|ENST00000401752|LARGE2	MULTI-SECPEP	A375_MHC_IP_R2	2	576.6633911132812	2	577.261653	1152.50875	-0.063955	-3.6919E-05	-0.68507	-0.00039547	-0.74903	-0.00043239	577.261190777335	68.77	0.86133	69.505	69.121	69.982	0.73511					31	16	3	0	0	0	0.76187	1	26206	26206		7.2892	7.2892	1	11257000			57609	7001	41974	42306	56237	56237					-0.0614004552426195
VENQTFGFF	9	Unmodified	_VENQTFGFF_					0	0	0			REV__tr|U7T5C5|U7T5C5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00520PE=4SV=1	REV__tr|U7T5C5|U7T5C5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00520PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	544.2145385742188	2	544.756007	1087.49746	-0.93298	-0.00050825	0.15123	8.2383E-05	-0.78175	-0.00042586	544.7560947383979	51.098	0.96227	51.852	51.462	52.425	0.75406					22	18	2	0	0	0	0.63327	1	19293	19293		18.146	12.849	1	2663400	+		57610	28823	41975	42307	56238	56238					-0.042788228277458984
VENRVSFKL	9	Unmodified	_VENRVSFKL_					0	0	0			REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	MULTI-SECPEP	A375_MHC_IP_R2	2	365.2852478027344	3	364.545108	1090.61349	-0.32418	-0.00011818	0.32894	0.00011991	0.0047682	1.7382E-06	364.5451842134532	24.391	0.25422	25.035	24.907	25.161	0.64368					6	4	2	0	0	0	0.69507	1	7971	7971		6.1918	0	1	5223600	+		57611	20096	41976	42308	56239	56239					0.07181120742961866
VENSLEIFD	9	Unmodified	_VENSLEIFD_					0	0	0		tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	1068.56591796875	1	1065.50988	1064.50261	0.10241	0.00010911	0.053634	5.7148E-05	0.15604	0.00016626	1065.5098732566541	89.654	1.5208	89.654	89.171	90.692	0					73	29	4	0	0	0	0.6324	1	32875	32875		13.042	0	1	60196000			57612	29568	41977	42309	56240	56240					-0.02706563755782554
VENSLEIFD	9	Unmodified	_VENSLEIFD_					0	0	0		tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		1	1065.50988	1064.50261	0.14647	0.00015607	-0.46088	-0.00049108	-0.31441	-0.00033501	1065.5093511759949	88.933	1.4711	89.665	89.279	90.751	0.7318	0.0058257	-0.00020518	NaN	13.042	72	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58378000			57613	29568	41977	42309							-0.02706563755782554
VENTEENRRLY	11	Unmodified	_VENTEENRRLY_					0	0	0		ENSG00000109107|ENST00000226253|ALDOC;ENST00000582381.1_1_17:26902119-26903857:-|nuORF	ENSG00000109107|ENST00000226253|ALDOC	ENSG00000109107|ENST00000226253|ALDOC	MULTI-MSMS	A375_MHC_IP_R2	2	475.3036804199219	3	474.903912	1421.68991	-0.89068	-0.00042299	0.27236	0.00012934	-0.61832	-0.00029364	474.9039941632095	22.702	0.76605	23.332	22.806	23.572	0.63014					26	14	3	0	0	0	0.50979	1	7203	7203		30.354	23.731	1	4459800			57614	2856	41978	42310	56241	56241					-0.004071522183721754
VENTNIEEDV	10	Unmodified	_VENTNIEEDV_					0	0	0		tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1	tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1	tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	581.6668701171875	2	581.267133	1160.51971	-0.16602	-9.6502E-05	-0.1536	-8.9284E-05	-0.31962	-0.00018579	581.2670353046253	46.668	0.55986	47.43	47.207	47.767	0.76184					30	10	4	0	0	0	0.098574	1	17470	17470		63.961	2.8706	1	9015500			57615	30055	41979	42311	56242	56242					-0.05412687940656724
VENTNIEEDV	10	Unmodified	_VENTNIEEDV_					0	0	0		tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1	tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1	tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	581.267133	1160.51971	-0.16602	-9.6502E-05	-0.1536	-8.9284E-05	-0.31962	-0.00018579	581.2670353046253	46.668	0.55986	47.43	47.207	47.767	0.76184	0.038753	2.1791E-05	NaN	63.961	30	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9015500			57616	30055	41979	42311							-0.05412687940656724
VENVPPLRW	9	Unmodified	_VENVPPLRW_					0	0	0		nc|ENSG00000067182|P19438-3|TNFRSF1A;ENST00000536717.5_1_12:6438480-6440154:-|nuORF;nc|ENSG00000067182|P19438-2|TNFRSF1A;ENSG00000067182|ENST00000162749|TNFRSF1A	nc|ENSG00000067182|P19438-3|TNFRSF1A	nc|ENSG00000067182|P19438-3|TNFRSF1A	MULTI-MSMS	A375_MHC_IP_R1	1	555.3085327148438	2	555.308741	1108.60293	-0.53812	-0.00029882	0.10861	6.031E-05	-0.42951	-0.00023851	555.3087632342508	79.553	1.5313	79.553	78.96	80.492	0					73	29	3	0	0	0	0.0098183	2	29129	28931;29129		114.65	80.547	1	8293300			57617	1430	41980	42312	56243;56244	56244					0.052971380884855535
VENVPPLRW	9	Unmodified	_VENVPPLRW_					0	0	0		nc|ENSG00000067182|P19438-3|TNFRSF1A;ENST00000536717.5_1_12:6438480-6440154:-|nuORF;nc|ENSG00000067182|P19438-2|TNFRSF1A;ENSG00000067182|ENST00000162749|TNFRSF1A	nc|ENSG00000067182|P19438-3|TNFRSF1A	nc|ENSG00000067182|P19438-3|TNFRSF1A	MULTI-SECPEP	A375_MHC_IP_R2	2	555.7081298828125	2	555.308741	1108.60293	-0.70132	-0.00038945	-0.33568	-0.00018641	-1.037	-0.00057586	555.3084234630452	78.858	1.7778	79.603	78.522	80.299	0.74474					84	34	3	0	0	0	0.076731	1	29992	29992		88.954	72.012	1	7328000			57618	1430	41980	42312	56245	56245					0.052971380884855535
VEPDANVDE	9	Unmodified	_VEPDANVDE_					0	0	0			REV__ENSG00000182173|ENST00000333213|TSEN54	REV__ENSG00000182173|ENST00000333213|TSEN54	MSMS	A375_MHC_IP_R2	2	494.1465148925781	2	494.216911	986.41927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.236	1	78.979	78.479	79.479	0.74293								0	0	0	0.15486	1	29709	29709		10.824	0.75	1		+		57619	21675	41981	42313	56246	56246					-0.07448300203668623
VEPEEESSSPS	11	Unmodified	_VEPEEESSSPS_					0	0	0			REV__nc|ENSG00000126351|P10827-4|THRA	REV__nc|ENSG00000126351|P10827-4|THRA	MULTI-MSMS	A375_MHC_IP_R2	2	589.14697265625	2	588.748773	1175.48299	-0.37118	-0.00021853	-0.41783	-0.000246	-0.78901	-0.00046453	588.7481481964774	111.91	0.66586	112.63	112.25	112.92	0.72458					18	12	2	0	0	0	0.72728	1	42209	42209		11.495	0.67078	1	2505100	+		57620	27209	41982	42314	56247	56247					-0.09772984557207565
VEPEEESSSPS	11	Unmodified	_VEPEEESSSPS_					0	0	0			REV__nc|ENSG00000126351|P10827-4|THRA	REV__nc|ENSG00000126351|P10827-4|THRA	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	588.748773	1175.48299	-0.37118	-0.00021853	-0.41783	-0.000246	-0.78901	-0.00046453	588.7481481964774	111.91	0.66586	112.63	112.25	112.92	0.72458	-0.032597	0.00064821	NaN	11.495	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2505100	+		57621	27209	41982	42314							-0.09772984557207565
VEPGSQRWF	9	Unmodified	_VEPGSQRWF_					0	0	0		ENSG00000168246|ENST00000393792|UBTD2	ENSG00000168246|ENST00000393792|UBTD2	ENSG00000168246|ENST00000393792|UBTD2	MULTI-SECPEP	A375_MHC_IP_R2	2	369.5857849121094	3	369.185691	1104.53524	0.048625	1.7952E-05	0.27878	0.00010292	0.3274	0.00012087	369.18561947633617	38.01	0.41228	38.785	38.534	38.946	0.77451					18	7	3	0	0	0	0.71071	1	13984	13984		6.6304	2.754	1	2823800			57622	7276	41983	42315	56248	56248					-0.012843118423006672
VEPHNDYFST	10	Unmodified	_VEPHNDYFST_					0	0	0		nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;ENSG00000143493|ENST00000366994|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	MULTI-MSMS	A375_MHC_IP_R1	1	604.6627197265625	2	604.76456	1207.51457	-0.18432	-0.00011147	1.3839	0.00083691	1.1995	0.00072544	604.766940094844	93.202	0.15398	93.202	93.074	93.228	0					4	2	2	0	0	0	0.70496	1	34268	34268		10.074	1.4806	1	1571600			57623	5400	41984	42316	56249	56249					-0.08088947012629433
VEPHNDYFST	10	Unmodified	_VEPHNDYFST_					0	0	0		nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;ENSG00000143493|ENST00000366994|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	MULTI-MATCH	A375_MHC_IP_R2	2		2	604.76456	1207.51457	-0.35366	-0.00021388	-3.2443	-0.001962	-3.5979	-0.0021759	605.2639884985145	92.173	0.20287	92.912	92.785	92.987	0.73902	-0.1451	-0.0011816	NaN	10.074	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1169500			57624	5400	41984	42316							-0.08088947012629433
VEPLLYNYF	9	Unmodified	_VEPLLYNYF_					0	0	0			REV__tr|U7SJI7|U7SJI7_FUSNUCRISPR-associatedproteinCsh1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02169PE=4SV=1	REV__tr|U7SJI7|U7SJI7_FUSNUCRISPR-associatedproteinCsh1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02169PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	579.6957397460938	2	579.297507	1156.58046	-0.22624	-0.00013106	-2.5167	-0.0014579	-2.7429	-0.001589	579.2956810994367	78.151	0.50771	78.894	78.676	79.183	0.74293					13	9	2	0	0	0	0.73363	1	29734	29734		10.824	0	1	1501100	+		57625	28235	41985	42317	56250	56250					0.008434939002199826
VEPLSGHLSL	10	Unmodified	_VEPLSGHLSL_					0	0	0			REV__nc|ENSG00000170927|P08F94-2|PKHD1	REV__nc|ENSG00000170927|P08F94-2|PKHD1	MULTI-SECPEP	A375_MHC_IP_R1	1	525.6891479492188	2	526.292756	1050.57096	-0.70873	-0.000373	2.2895	0.0012049	1.5807	0.00083193	526.2935261111937	131.23	0.25092	131.23	131.13	131.38	0					7	4	2	0	0	0	0.70528	1	50611	50611		26.268	4.7312	1	1447400	+		57626	21034	41986	42318	56251	56251					0.04769725614710296
VEPRYVPI	8	Unmodified	_VEPRYVPI_					0	0	0		tr|U7STV3|U7STV3_FUSNUGlutamatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00995PE=3SV=1	tr|U7STV3|U7STV3_FUSNUGlutamatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00995PE=3SV=1	tr|U7STV3|U7STV3_FUSNUGlutamatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00995PE=3SV=1	MSMS	A375_MHC_IP_R2	2	486.69744873046875	2	486.779285	971.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.242	1	72.976	72.476	73.476	0.73421								0	0	0	0.16876	1	27414	27414		30.225	0	1				57627	29714	41987	42319	56252	56252					0.057106617941940385
VEPSLRKVV	9	Unmodified	_VEPSLRKVV_					0	0	0		ENSG00000068354|ENST00000376771|TBC1D25	ENSG00000068354|ENST00000376771|TBC1D25	ENSG00000068354|ENST00000376771|TBC1D25	MULTI-SECPEP	A375_MHC_IP_R2	2	513.2417602539062	2	513.818941	1025.62333	-0.9067	-0.00046588	0.2693	0.00013837	-0.6374	-0.00032751	513.8189305504621	54.998	0.51101	55.748	55.473	55.984	0.75075					13	9	2	0	0	0	0.67483	1	20740	20740		14.838	3.3436	1	2143100			57628	1457	41988	42320	56253	56253					0.11154308748336916
VEPSNDNTDL	10	Unmodified	_VEPSNDNTDL_					0	0	0			REV__nc|ENSG00000249158|Q9Y5I1-2|PCDHA11	REV__nc|ENSG00000249158|Q9Y5I1-2|PCDHA11	MULTI-MSMS	A375_MHC_IP_R1	1	552.6444702148438	2	552.2462	1102.47785	-0.53627	-0.00029615	-1.3927	-0.00076911	-1.929	-0.0010653	552.2446420484201	61.695	1.0216	61.695	61.382	62.403	0					37	19	3	0	0	0	0.67512	1	22251	22251		15.248	0	1	4308000	+		57629	22835	41989	42321	56254	56254					-0.06929243629178927
VEPSNDNTDL	10	Unmodified	_VEPSNDNTDL_					0	0	0			REV__nc|ENSG00000249158|Q9Y5I1-2|PCDHA11	REV__nc|ENSG00000249158|Q9Y5I1-2|PCDHA11	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	552.2462	1102.47785	-0.53627	-0.00029615	-1.3927	-0.00076911	-1.929	-0.0010653	552.2446420484201	61.695	1.0216	61.695	61.382	62.403	0	0.042635	-5.5977E-05	NaN	15.248	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4308000	+		57630	22835	41989	42321							-0.06929243629178927
VEPVEELY	8	Unmodified	_VEPVEELY_					0	0	0			REV__MER49_dup1305|chr21:41210187-41211078:+|3.35816670135563|0.4412608656295442|2.93|472.0|55|3|anti-sense	REV__MER49_dup1305|chr21:41210187-41211078:+|3.35816670135563|0.4412608656295442|2.93|472.0|55|3|anti-sense	MULTI-SECPEP	A375_MHC_IP_R1	1	489.6136779785156	2	489.244941	976.475328	-0.18821	-9.208E-05	-0.84187	-0.00041188	-1.0301	-0.00050396	489.2443485652289	56.608	0.8653	56.608	56.397	57.263	0					24	16	2	0	0	0	0.90224	1	20262	20262		26.341	0	1	3338900	+		57631	27010	41990	42322	56255	56255					-0.013850472961848936
VEPYEEGLY	9	Unmodified	_VEPYEEGLY_					0	0	0			REV__ENSG00000115524|ENST00000335508|SF3B1	REV__ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	A375_MHC_IP_R1	1	550.7110595703125	2	549.75313	1097.49171	-0.50356	-0.00027683	0.32555	0.00017897	-0.17801	-9.786E-05	549.7532742888002	103.15	0.91637	103.15	102.76	103.68	0					38	17	3	0	0	0	0.64808	1	37832	37832		11.64	4.9171	1	7637800	+		57632	17893	41991	42323	56256	56256					-0.05313966130074732
VEQGIDAKW	9	Unmodified	_VEQGIDAKW_					0	0	0		ENSG00000179151|ENST00000315127|EDC3	ENSG00000179151|ENST00000315127|EDC3	ENSG00000179151|ENST00000315127|EDC3	MULTI-SECPEP	A375_MHC_IP_R2	2	523.6685791015625	2	523.269281	1044.52401	-0.36577	-0.0001914	0.11821	6.1857E-05	-0.24756	-0.00012954	523.269272405935	47.235	0.56076	47.996	47.664	48.225	0.76128					25	10	3	0	0	0	0.054506	1	17661	17661		91.085	23.247	1	25086000			57633	8209	41992	42324	56257	56257					0.0035286606357658457
VEQHIEVW	8	Unmodified	_VEQHIEVW_					0	0	0			REV__nc|ENSG00000165801|Q8TER5-4|ARHGEF40	REV__nc|ENSG00000165801|Q8TER5-4|ARHGEF40	MULTI-SECPEP	A375_MHC_IP_R1	1	519.7216796875	2	520.263999	1038.51345	-0.49806	-0.00025912	0.81497	0.000424	0.31691	0.00016488	520.2643866438591	60.064	0.56004	60.064	59.803	60.363	0					22	10	3	0	0	0	0.96266	1	21630	21630		16.942	9.0321	1	2474000	+		57634	20622	41993	42325	56258	56258					-0.0042711659086762666
VEQHIEVW	8	Unmodified	_VEQHIEVW_					0	0	0			REV__nc|ENSG00000165801|Q8TER5-4|ARHGEF40	REV__nc|ENSG00000165801|Q8TER5-4|ARHGEF40	MULTI-MSMS	A375_MHC_IP_R2	2	520.6643676757812	2	520.263999	1038.51345	-1.0548	-0.00054878	0.028909	1.504E-05	-1.0259	-0.00053374	520.2639340379188	59.219	0.50666	59.966	59.641	60.148	0.74714					18	9	3	0	0	0	0.76248	1	22389	22389		16.942	3.0362	1	3239800	+		57635	20622	41993	42325	56259	56259					-0.0042711659086762666
VEQKRKPR	8	Unmodified	_VEQKRKPR_					0	0	0		ENST00000417079.5_1_13:30939738-30939885:-|nuORF	ENST00000417079.5_1_13:30939738-30939885:-|nuORF	ENST00000417079.5_1_13:30939738-30939885:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	520.3927612304688	2	520.819807	1039.62506	-0.40126	-0.00020898	-0.4308	-0.00022437	-0.83206	-0.00043335	520.8193817238324	28.617	0.25403	28.617	28.491	28.745	0					6	4	2	0	0	0	0.972	1	8888	8888		0.69038	0.69038	1	1526200			57636	11699	41994	42326	56260	56260					0.10683362556937936
VEQKSADWV	9	Unmodified	_VEQKSADWV_					0	0	0			REV__ENSG00000120262|ENST00000239374|CCDC170	REV__ENSG00000120262|ENST00000239374|CCDC170	MULTI-MSMS	A375_MHC_IP_R2	2	531.216064453125	2	531.266739	1060.51892	-0.56741	-0.00030145	0.012474	6.6271E-06	-0.55494	-0.00029482	531.7681313129691	42.964	0.45536	43.737	43.421	43.876	0.7724					16	8	3	0	0	0	0.60101	1	15874	15874		14.838	2.3067	1	1841000	+		57637	18118	41995	42327	56261	56261					-0.008914377990549838
VEQLNHLY	8	Unmodified	_VEQLNHLY_					0	0	0			REV__nc|ENSG00000136205|Q68CZ2-4|TNS3	REV__nc|ENSG00000136205|Q68CZ2-4|TNS3	MULTI-SECPEP	A375_MHC_IP_R1	1	507.69232177734375	2	508.263999	1014.51345	-0.48968	-0.00024889	0.3277	0.00016656	-0.16199	-8.2332E-05	508.2638981489888	76.571	0.55904	76.571	76.319	76.878	0					29	10	3	0	0	0	0.84748	1	27918	27918		15.847	4.2069	1	5650200	+		57638	18921	41996	42328	56262	56262					0.006768834091417375
VEQLVRHFL	9	Unmodified	_VEQLVRHFL_					0	0	0		ENST00000549311.7_1_12:53443879-53456445:+|nuORF;ENST00000552168.1_1_12:53455887-53456624:+|nuORF;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-2|TNS2;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2	ENST00000549311.7_1_12:53443879-53456445:+|nuORF	ENST00000549311.7_1_12:53443879-53456445:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	381.6134948730469	3	380.888986	1139.64513	0.29018	0.00011053	-0.018288	-6.9658E-06	0.2719	0.00010356	380.8889452461441	34.564	0.60515	34.564	34.103	34.708	0					16	11	2	0	0	0	0.77003	1	11224	11224		11.495	7.3052	1	1356400			57639	13358	41997	42329	56263	56263					0.08089113496885147
VEQMGKEGLP	10	Unmodified	_VEQMGKEGLP_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;ENSG00000152818|ENST00000367545|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	MSMS	A375_MHC_IP_R1	1	544.186279296875	2	544.276249	1086.53795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.561	1	62.561	62.061	63.061	0								0	0	0	0.14483	1	22597	22597		27.629	1.3607	1				57640	5986	41998	42330	56264	56264					-0.0018622449963459076
VEQNPLLGF	9	Unmodified	_VEQNPLLGF_					0	0	0		ENST00000506888.5_1_6:88187111-88216600:+|nuORF;nc|ENSG00000164414|P78382-2|SLC35A1;ENSG00000164414|ENST00000369552|SLC35A1	ENST00000506888.5_1_6:88187111-88216600:+|nuORF	ENST00000506888.5_1_6:88187111-88216600:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	508.71295166015625	2	508.7742	1015.53385	-0.56897	-0.00028948	1.0371	0.00052763	0.46808	0.00023815	508.7751332201683	111.02	0.86645	111.76	111.14	112.01	0.73692					18	14	2	0	0	0	0.38603	1	41860	41860		25.399	0	1	1295400			57641	6836	41999	42331	56265	56265					0.026700540689716945
VEQNTLQEF	9	Unmodified	_VEQNTLQEF_					0	0	0		ENSG00000142669|ENST00000270792|SH3BGRL3;ENST00000319041.6_1_1:26607416-26607611:+|nuORF	ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	MULTI-MSMS	A375_MHC_IP_R1	1	554.6692504882812	2	554.269478	1106.5244	-0.65955	-0.00036557	-0.77955	-0.00043208	-1.4391	-0.00079765	554.2693877663422	65.335	1.1201	65.335	64.75	65.871	0					48	21	3	0	0	0	0.012843	1	23656	23656		92.653	27.418	1	5759100			57642	5324	42000	42332	56266	56266					-0.024597590072289677
VEQNTLQEF	9	Unmodified	_VEQNTLQEF_					0	0	0		ENSG00000142669|ENST00000270792|SH3BGRL3;ENST00000319041.6_1_1:26607416-26607611:+|nuORF	ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	MULTI-MSMS	A375_MHC_IP_R2	2	554.6691284179688	2	554.269478	1106.5244	-0.74353	-0.00041211	-0.97499	-0.00054041	-1.7185	-0.00095252	554.2692073739278	64.651	1.0698	65.391	64.749	65.819	0.74022					42	20	3	0	0	0	0.0096822	1	24511	24511		110.55	14.186	1	5148900			57643	5324	42000	42332	56267	56267					-0.024597590072289677
VEQQEKWPL	9	Unmodified	_VEQQEKWPL_					0	0	0			REV__nc|ENSG00000089050|O75884-2|RBBP9	REV__nc|ENSG00000089050|O75884-2|RBBP9	MULTI-SECPEP	A375_MHC_IP_R2	2	578.1699829101562	2	578.803488	1155.59242	-0.3643	-0.00021086	-0.079106	-4.5787E-05	-0.44341	-0.00025665	578.8037266296495	55.125	0.61139	55.876	55.473	56.084	0.75075					16	11	2	0	0	0	0.71341	1	20876	20876		8.7454	1.4562	1	1063600	+		57644	16900	42001	42333	56268	56268					0.020851106434292888
VEQRLKEIE	9	Unmodified	_VEQRLKEIE_					0	0	0			REV__nc|ENSG00000143847|O75335|PPFIA4	REV__nc|ENSG00000143847|O75335|PPFIA4	MULTI-SECPEP	A375_MHC_IP_R1	1	382.2839050292969	3	381.883789	1142.62954	0.44687	0.00017065	0.84452	0.00032251	1.2914	0.00049316	381.8837983210982	38.63	0.45882	38.63	38.423	38.882	0					19	8	3	0	0	0	0.67471	1	13144	13144		22.658	0	1	3335300	+		57645	19392	42002	42334	56269	56269					0.06392782189186619
VEQTRGIFTV	10	Unmodified	_VEQTRGIFTV_					0	0	0		LAMA2|p.R2630Q|1|0.34|ENSG00000196569|chr6:129486613-129486613|G/A|missense_variant	LAMA2|p.R2630Q|1|0.34|ENSG00000196569|chr6:129486613-129486613|G/A|missense_variant	LAMA2|p.R2630Q|1|0.34|ENSG00000196569|chr6:129486613-129486613|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	575.200439453125	2	575.316763	1148.61897	-0.20828	-0.00011982	-0.83974	-0.00048312	-1.048	-0.00060294	575.8178828289427	77.46	0.81257	77.46	76.93	77.742	0					24	15	2	0	0	0	0.86849	1	28205	28205		9.3831	0.63772	1	1188000			57646	14279	42003	42335	56270	56270					0.05060799534749094
VEQWDSEW	8	Unmodified	_VEQWDSEW_					0	0	0			REV__nc|ENSG00000189056|P78509-3|RELN	REV__nc|ENSG00000189056|P78509-3|RELN	MULTI-SECPEP	A375_MHC_IP_R1	1	539.6133422851562	2	539.727446	1077.44034	-0.13649	-7.3667E-05	0.37959	0.00020487	0.2431	0.00013121	539.7275707713254	69.401	0.56017	69.401	69.121	69.681	0					16	10	3	0	0	0	0.972	1	25243	25243		5.2307	0	1	1976300	+		57647	22136	42004	42336	56271	56271					-0.09528290104140069
VEQYAKSFGM	10	Unmodified	_VEQYAKSFGM_					0	0	0		tr|U7STE9|U7STE9_FUSNUD-3-phosphoglyceratedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01033PE=3SV=1	tr|U7STE9|U7STE9_FUSNUD-3-phosphoglyceratedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01033PE=3SV=1	tr|U7STE9|U7STE9_FUSNUD-3-phosphoglyceratedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01033PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	579.7029418945312	2	580.276249	1158.53795	-0.25118	-0.00014575	-0.3734	-0.00021667	-0.62458	-0.00036243	580.2760405303202	64.646	0.25406	65.387	65.259	65.513	0.74022					5	4	2	0	0	0	0.90513	1	24489	24489		8.1555	0	1	722490			57648	29685	42005	42337	56272	56272					-0.03498224499639946
VEQYIGGAV	9	Unmodified	_VEQYIGGAV_					0	0	0			REV__ENST00000403687.7_1_2:33701623-33701665:+|nuORF	REV__ENST00000403687.7_1_2:33701623-33701665:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	468.6745300292969	2	468.245275	934.475997	-0.33863	-0.00015856	1.1685	0.00054714	0.82986	0.00038858	468.2457497953199	34.209	0.65862	34.209	33.798	34.456	0					21	12	2	0	0	0	0.58271	1	11134	11134		6.2058	0	1	2531500	+		57649	24419	42006	42338	56273	56273					0.006137921435311
VERAAPGPD	9	Unmodified	_VERAAPGPD_					0	0	0			REV__nc|ENSG00000157927|Q96JH8-2|RADIL	REV__nc|ENSG00000157927|Q96JH8-2|RADIL	MSMS	A375_MHC_IP_R1	1	456.1473388671875	2	456.232699	910.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.698	1	55.698	55.198	56.198	0								0	0	0	0.1535	1	19929	19929		15.847	1.0089	1		+		57650	20054	42007	42339	56274	56274					-0.007962626590483524
VERALVKQA	9	Unmodified	_VERALVKQA_					0	0	0			REV__ENSG00000244607|ENST00000310232|CCDC13	REV__ENSG00000244607|ENST00000310232|CCDC13	MULTI-SECPEP	A375_MHC_IP_R2	2	507.70806884765625	2	507.308741	1012.60293	-1.1944	-0.00060593	0.3671	0.00018623	-0.8273	-0.0004197	507.3088866949484	25.662	0.25494	26.321	26.194	26.449	0.65992					8	4	2	0	0	0	0.4465	1	8628	8628		31.268	1.4278	1	4437900	+		57651	22824	42008	42340	56275	56275					0.09713138088511641
VERAWFRRALY	11	Unmodified	_VERAWFRRALY_					0	0	0			REV__ENST00000518477.5_1_5:78317432-78365396:-|nuORF	REV__ENST00000518477.5_1_5:78317432-78365396:-|nuORF	MSMS	A375_MHC_IP_R2	2	489.614013671875	3	489.60536	1465.79425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.332	1	37.103	36.603	37.603	0.7709								0	0	0	0.16305	1	13237	13237		2.8433	0.21205	1		+		57652	25675	42009	42341	56276	56276					0.07998639119659856
VEREIWTRFKY	11	Unmodified	_VEREIWTRFKY_					0	0	0		ENST00000501830.2_1_15:30917398-30917659:-|nuORF	ENST00000501830.2_1_15:30917398-30917659:-|nuORF	ENST00000501830.2_1_15:30917398-30917659:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	764.306884765625	2	763.90935	1525.80415	-0.90191	-0.00068898	-2.4348	-0.0018599	-3.3367	-0.0025489	763.9080389735163	131.12	0.25276	131.34	131.21	131.46	0.2142					9	4	3	0	0	0	0.73284	1	51602	51602		6.1918	2.9105	1	9613300			57653	12785	42010	42342	56277	56277					0.06227782334326548
VEREIWTRFKY	11	Unmodified	_VEREIWTRFKY_					0	0	0		ENST00000501830.2_1_15:30917398-30917659:-|nuORF	ENST00000501830.2_1_15:30917398-30917659:-|nuORF	ENST00000501830.2_1_15:30917398-30917659:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	763.90935	1525.80415	-0.71918	-0.00054939	-1.5695	-0.0011989	-2.2887	-0.0017483	763.907913699443	131.3	0.30115	131.3	131.13	131.43	0	-0.018284	0.00028995	NaN	6.1918	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10804000			57654	12785	42010	42342							0.06227782334326548
VERENVIEY	9	Unmodified	_VERENVIEY_					0	0	0		ENSG00000096968|ENST00000381652|JAK2;JAK2|p.E577Sfs*8|1|0.71|ENSG00000096968|chr9:5072578-5072579|AG/-|frameshift_variant	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	MSMS	A375_MHC_IP_R1	1	575.7184448242188	2	575.790578	1149.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.727	1	68.727	68.227	69.227	0								0	0	0	0.10702	1	24928	24928		39.95	13.682	1				57655	2064	42011	42343	56278	56278					-0.002197835988681618
VEREPQQTLWQ	11	Unmodified	_VEREPQQTLWQ_					0	0	0			REV__KLHL36|p.A226V|1|0.45|ENSG00000135686|chr16:84657484-84657484|C/T|missense_variant	REV__KLHL36|p.A226V|1|0.45|ENSG00000135686|chr16:84657484-84657484|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	707.357177734375	2	707.35969	1412.70483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.853	1	89.585	89.085	90.085	0.7318								0	0	0	0.16223	1	33817	33817		7.1017	1.8048	1		+		57656	26860	42012	42344	56279	56279					0.01498339649629088
VEREVCFIDIA	11	Unmodified	_VEREVCFIDIA_					0	0	0		nc|ENSG00000154217|Q9UKF7-2|PITPNC1;ENSG00000154217|ENST00000581322|PITPNC1;ENST00000581923.5_1_17:65574310-65628417:+|nuORF;ENST00000578527.1_1_17:65549676-65688690:+|nuORF	nc|ENSG00000154217|Q9UKF7-2|PITPNC1	nc|ENSG00000154217|Q9UKF7-2|PITPNC1	MULTI-SECPEP	A375_MHC_IP_R2	2	431.2188720703125	3	431.888434	1292.64347	-0.045451	-1.963E-05	2.5791	0.0011139	2.5337	0.0010943	432.22263684986405	141.57	2.4034	141.61	139.94	142.34	0.042175					69	46	2	0	0	0	0.99955	1	55495	55495		0.073264	0	1	529590			57657	6069	42013	42345	56280	56280					0.008856916259901482
VEREWAEEGP	10	Unmodified	_VEREWAEEGP_					0	0	0			REV__ENSG00000100441|ENST00000553935|KHNYN	REV__ENSG00000100441|ENST00000553935|KHNYN	MULTI-SECPEP	A375_MHC_IP_R1	1	400.6033935546875	3	401.187649	1200.54112	-0.41041	-0.00016465	0.43229	0.00017343	0.021874	8.7758E-06	401.1879279731774	31.185	0.40463	31.185	30.959	31.363	0					10	7	2	0	0	0	0.93733	1	9890	9890		3.0723	0.44103	1	1846400	+		57658	17093	42014	42346	56281	56281					-0.0511325812128689
VERFIRFHKK	10	Unmodified	_VERFIRFHKK_					0	0	0			REV__nc|ENSG00000183765|O96017-12|CHEK2	REV__nc|ENSG00000183765|O96017-12|CHEK2	MSMS	A375_MHC_IP_R1	1	454.0036315917969	3	453.938451	1358.79352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.94	1	142.94	142.44	143.44	0								0	0	0	0.1562	1	54845	54845		0.69767	0.19171	1		+		57659	27401	42015	42347	56282	56282					0.12847844470570635
VERHVKRR	8	Unmodified	_VERHVKRR_					0	0	0			REV__nc|nan|Q5JPI3-2|C3orf38	REV__nc|nan|Q5JPI3-2|C3orf38	MSMS	A375_MHC_IP_R2	2	540.3844604492188	2	540.330873	1078.64719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.53	1	138.62	138.12	139.12	0.083969								0	0	0	0.16876	1	54319	54319		2.3027	0	1		+		57660	21536	42016	42348	56283	56283					0.1110158702535955
VERHVKRR	8	Unmodified	_VERHVKRR_					0	0	0			REV__nc|nan|Q5JPI3-2|C3orf38	REV__nc|nan|Q5JPI3-2|C3orf38	MSMS	A375_MHC_IP_R2	2	540.384521484375	2	540.330873	1078.64719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.23	1	139.29	138.79	139.79	0.059906								0	0	0	0.16876	1	54559	54559		2.3027	0	1		+		57661	21536	42016	42348	56284	56284					0.1110158702535955
VERIAMTAY	9	Unmodified	_VERIAMTAY_					0	0	0			REV__ENSG00000091127|ENST00000469408|PUS7	REV__ENSG00000091127|ENST00000469408|PUS7	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6489868164062	2	527.273509	1052.53247	-0.48967	-0.00025819	-1.5128	-0.00079767	-2.0025	-0.0010559	527.7743447089701	77.57	0.25139	78.313	78.165	78.416	0.74293					7	4	2	0	0	0	0.56537	1	29414	29414		17.113	5.4726	1	562910	+		57662	16942	42017	42349	56285	56285					0.008300967085460798
VERKELQSF	9	Unmodified	_VERKELQSF_					0	0	0			REV__ENSG00000178187|ENST00000519564|ZNF454	REV__ENSG00000178187|ENST00000519564|ZNF454	MULTI-SECPEP	A375_MHC_IP_R1	1	378.61468505859375	3	379.208384	1134.60332	0.7146	0.00027098	-0.04824	-1.8293E-05	0.66636	0.00025269	379.20829506979055	49.485	0.50768	49.485	49.235	49.743	0					17	9	3	0	0	0	0.775	1	17424	17424		10.8	0.64894	1	1205600	+		57663	21492	42018	42350	56286	56286					0.04140513017705416
VERKHTLKLRH	11	Unmodified	_VERKHTLKLRH_					0	0	0		ENSG00000187796|ENST00000371732|CARD9;ENST00000485975.1_1_9:139264964-139265319:-|nuORF;nc|ENSG00000289701|Q9H257-3|CARD9;nc|ENSG00000289701|Q9H257-2|CARD9	ENSG00000187796|ENST00000371732|CARD9	ENSG00000187796|ENST00000371732|CARD9	MSMS	A375_MHC_IP_R1	1	709.0953369140625	2	708.930951	1415.84735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.69	1	123.69	123.19	124.19	0								0	0	0	0.16273	1	46265	46265		4.5289	1.5336	1				57664	8859	42019	42351	56287	56287					0.15606016902302144
VERKLRRKKKK	11	Unmodified	_VERKLRRKKKK_					0	0	0			REV__ENST00000432347.6_2_4:128996143-128999057:+|nuORF	REV__ENST00000432347.6_2_4:128996143-128999057:+|nuORF	MSMS	A375_MHC_IP_R2	2	735.1882934570312	2	734.999168	1467.98378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.545	1	98.3	97.8	98.8	0.75586								0	0	0	0.16353	1	37022	37022		0.35063	0.35063	1		+		57665	24716	42020	42352	56288	56288					0.26851131132775663
VERLEKIL	8	Unmodified	_VERLEKIL_					0	0	0			REV__tr|U7T2L6|U7T2L6_FUSNUDNAgyrasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gyrAPE=3SV=1	REV__tr|U7T2L6|U7T2L6_FUSNUDNAgyrasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gyrAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	1000.020263671875	1	999.619707	998.612431	0.19416	0.00019409	0.36401	0.00036388	0.55818	0.00055797	999.6201640093132	111.31	0.51529	112.05	111.85	112.37	0.73692					12	9	2	0	0	0	0.77624	1	42044	42044		8.5933	0	1	4384000	+		57666	28751	42021	42353	56289	56289					0.1130690637405678
VERLHGLHF	9	Unmodified	_VERLHGLHF_					0	0	0			REV__ENSG00000165509|ENST00000298296|MAGEC3	REV__ENSG00000165509|ENST00000298296|MAGEC3	MULTI-MSMS	A375_MHC_IP_R1	1	369.6207275390625	3	369.873447	1106.59851	0.0041351	1.5295E-06	-0.63311	-0.00023417	-0.62898	-0.00023264	369.8731675854965	28.999	0.86176	28.999	28.541	29.403	0					15	9	3	0	0	0	0.71902	1	8979	8979		5.2969	1.7004	1	3112100	+		57667	20590	42022	42354	56290	56290					0.04947673665606089
VERLKLKL	8	Unmodified	_VERLKLKL_					0	0	0		nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L;ENSG00000168386|ENST00000477258|FILIP1L;FILIP1L|p.L750Tfs*16|1|0.33|ENSG00000168386|chr3:99849428-99849429|-/T|frameshift_variant	nc|ENSG00000168386|Q4L180-6|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	MULTI-SECPEP	A375_MHC_IP_R2	2	500.4482116699219	2	499.839677	997.664801	-0.83015	-0.00041494	-0.020926	-1.0459E-05	-0.85107	-0.0004254	499.8396690412639	54.325	0.40532	55.075	54.763	55.169	0.75075					10	7	2	0	0	0	0.972	1	20427	20427		5.2307	0	1	977180			57668	7294	42023	42355	56291	56291					0.16587489507651298
VERLRLKRVK	10	Unmodified	_VERLRLKRVK_					0	0	0			REV__nc|ENSG00000089091|Q9NVP4-3|DZANK1	REV__nc|ENSG00000089091|Q9NVP4-3|DZANK1	MSMS	A375_MHC_IP_R1	1	648.9957275390625	2	648.932963	1295.85137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.62	1	102.62	102.12	103.12	0								0	0	0	0.15591	1	37715	37715		1.6526	0	1		+		57669	27130	42024	42356	56292	56292					0.21528106395999203
VERNPIRLS	9	Unmodified	_VERNPIRLS_					0	0	0			REV__tr|U7T5C5|U7T5C5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00520PE=4SV=1	REV__tr|U7T5C5|U7T5C5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00520PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	542.716552734375	2	542.317097	1082.61964	-0.92364	-0.00050091	-0.23576	-0.00012786	-1.1594	-0.00062876	542.3170168276695	26.196	0.60862	26.196	25.966	26.575	0					28	11	3	0	0	0	0.79535	1	7781	7781		3.2813	0	1	10637000	+		57670	28823	42025	42357	56293	56293					0.08163638974451715
VERPVNLPII	10	Unmodified	_VERPVNLPII_					0	0	0			REV__ENST00000492633.5_1_1:60370173-60378128:-|nuORF	REV__ENST00000492633.5_1_1:60370173-60378128:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	384.59967041015625	3	383.904524	1148.69174	-0.06118	-2.3487E-05	0.15695	6.0254E-05	0.095771	3.6767E-05	383.9046046201322	41.564	0.3578	41.564	41.368	41.725	0					11	6	2	0	0	0	0.92957	1	14321	14321		0.56317	0	1	1465200	+		57671	18795	42026	42358	56294	56294					0.12334553328196307
VERRDQIYY	9	Unmodified	_VERRDQIYY_					0	0	0			REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	MSMS	A375_MHC_IP_R2	2	621.477783203125	2	621.317294	1240.62004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.791	1	87.524	87.024	88.024	0.733								0	0	0	0.13673	1	33006	33006		30.637	7.9003	1		+		57672	20885	42027	42359	56295	56295					0.009350139036769178
VERRDQIYY	9	Unmodified	_VERRDQIYY_					0	0	0			REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	MSMS	A375_MHC_IP_R2	2	621.478515625	2	621.317294	1240.62004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.985	1	87.718	87.218	88.218	0.733								0	0	0	0.14851	1	33079	33079		24.021	6.9077	1		+		57673	20885	42027	42359	56296	56296					0.009350139036769178
VERREMYY	8	Unmodified	_VERREMYY_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R2	2	573.6751708984375	2	573.274041	1144.53353	-0.22957	-0.00013161	0.33257	0.00019066	0.103	5.9048E-05	573.2754182333148	102.34	0.66108	103.1	102.77	103.43	0.76428					25	12	3	0	0	0	0.7754	1	38766	38766		11.64	1.5664	1	1516000	+		57674	19932	42028	42360	56297	56297					-0.03295688922548834
VERRHLHL	8	Unmodified	_VERRHLHL_					0	0	0			REV__FRS3|p.A54V|1|0.15|ENSG00000137218|chr6:41775511-41775511|G/A|missense_variant	REV__FRS3|p.A54V|1|0.15|ENSG00000137218|chr6:41775511-41775511|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	530.1722412109375	2	530.312149	1058.60975	-0.45539	-0.0002415	2.7368	0.0014514	2.2814	0.0012099	530.3138786606714	82.066	0.60743	82.066	81.657	82.265	0					15	11	2	0	0	0	0.8824	1	29958	29958		11.64	0	1	1154700	+		57675	26652	42029	42361	56298	56298					0.0827849575973687
VERRIVSYP	9	Unmodified	_VERRIVSYP_					0	0	0			REV__PZP|p.G811R|1|0.09|ENSG00000126838|chr12:9165195-9165195|C/T|missense_variant	REV__PZP|p.G811R|1|0.09|ENSG00000126838|chr12:9165195-9165195|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	560.21923828125	2	559.819473	1117.62439	-0.16108	-9.0175E-05	-0.10283	-5.7565E-05	-0.26391	-0.00014774	559.8193186551566	69.127	0.45695	69.127	68.92	69.377	0					17	8	3	0	0	0	0.53367	1	25076	25076		18.146	0	1	2205400	+		57676	27864	42030	42362	56299	56299					0.07028523117219265
VERRLAVLSTL	11	Unmodified	_VERRLAVLSTL_					0	0	0			REV__ENSG00000137824|ENST00000338376|RMDN3	REV__ENSG00000137824|ENST00000338376|RMDN3	MSMS	A375_MHC_IP_R1	1	628.9697875976562	2	628.887887	1255.76122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.201	1	97.201	96.701	97.701	0								0	0	0	0.16302	1	35714	35714		2.9952	0	1		+		57677	19039	42031	42363	56300	56300					0.1435701227694608
VERRRFFLPRE	11	Unmodified	_VERRRFFLPRE_					0	0	0			REV__ENST00000529307.1_1_11:34074563-34074728:+|nuORF	REV__ENST00000529307.1_1_11:34074563-34074728:+|nuORF	MSMS	A375_MHC_IP_R2	2	752.8727416992188	2	752.928409	1503.84226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.32	1	112.06	111.56	112.56	0.73692								0	0	0	0.16334	1	41976	41976		1.3295	0	1		+		57678	25818	42032	42364	56301	56301					0.11049713039710696
VERRSDESY	9	Unmodified	_VERRSDESY_					0	0	0			REV__ENST00000374293.4_1_9:114429173-114431567:+|nuORF	REV__ENST00000374293.4_1_9:114429173-114431567:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	571.50439453125	2	570.767634	1139.52072	-0.25322	-0.00014453	1.8971	0.0010828	1.6439	0.00093829	570.7681798794521	98.411	0.15452	98.411	98.3	98.455	0					4	2	2	0	0	0	0.78348	1	36131	36131		7.9102	3.5809	1	465570	+		57679	24104	42033	42365	56302	56302					-0.04346428781082068
VERRSSVIY	9	Unmodified	_VERRSSVIY_					0	0	0			REV__ENST00000526915.5_1_17:42786185-42811460:+|nuORF	REV__ENST00000526915.5_1_17:42786185-42811460:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1793823242188	2	554.809105	1107.60366	-0.99672	-0.00055299	-0.59359	-0.00032933	-1.5903	-0.00088232	554.809011603185	41.277	0.35373	42.051	41.845	42.198	0.77451					10	6	2	0	0	0	0.75519	1	15293	15293		10.074	0	1	1146900	+		57680	20217	42034	42366	56303	56303					0.05415932737582807
VERTNGQLT	9	Unmodified	_VERTNGQLT_					0	0	0			REV__ENST00000478788.1_1_7:151199643-151199829:+|nuORF	REV__ENST00000478788.1_1_7:151199643-151199829:+|nuORF	MSMS	A375_MHC_IP_R2	2	509.1657409667969	2	509.269813	1016.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.815	1	76.556	76.056	77.056	0.74052								0	0	0	0.14359	1	28779	28779		28.487	0	1		+		57681	18132	42035	42367	56304	56304					0.017470804324716482
VERVPQVHPA	10	Unmodified	_VERVPQVHPA_					0	0	0			REV__ENSG00000128713|ENST00000249504|HOXD11	REV__ENSG00000128713|ENST00000249504|HOXD11	MULTI-SECPEP	A375_MHC_IP_R1	1	378.2929382324219	3	377.88049	1130.61964	0.38319	0.0001448	-1.0115	-0.00038224	-0.62835	-0.00023744	377.88008310764536	20.232	0.3034	20.232	19.98	20.283	0					7	5	2	0	0	0	0.92832	1	5170	5170		8.4443	8.4443	1	442480	+		57682	18465	42036	42368	56305	56305					0.05955638974478461
VERWLGFI	8	Unmodified	_VERWLGFI_					0	0	0		ENST00000587860.1_1_18:46287547-46385927:+|nuORF;ENSG00000134030|ENST00000256413|CTIF;nc|ENSG00000134030|O43310-2|CTIF	ENST00000587860.1_1_18:46287547-46385927:+|nuORF	ENST00000587860.1_1_18:46287547-46385927:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	510.6758728027344	2	510.287277	1018.56	-0.49572	-0.00025296	-0.67288	-0.00034336	-1.1686	-0.00059632	510.2870211707811	99.651	0.61018	100.41	100.12	100.73	0.76278					26	11	3	0	0	0	0.96266	1	37870	37870		11.64	11.64	1	3352700			57683	4545	42037	42369	56306	56306					0.05146368031103066
VERWYRHQWRR	11	Unmodified	_VERWYRHQWRR_					0	0	0			REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF	REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	836.0550537109375	2	836.440006	1670.86546	-0.7314	-0.00061177	-1.2274	-0.0010266	-1.9588	-0.0016384	836.4397357733037	131.22	0.25487	131.41	131.29	131.54	0.18953					5	4	2	0	0	0	0.73795	1	51596	51596		1.3295	1.0225	1	4431000	+		57684	26181	42038	42370	56307	56307					0.0568615187701198
VERYRNFYERE	11	Unmodified	_VERYRNFYERE_					0	0	0			REV__RBBP6|p.E1056Nfs*55|1|0.28|ENSG00000122257|chr16:24569855-24569855|T/-|frameshift_variant	REV__RBBP6|p.E1056Nfs*55|1|0.28|ENSG00000122257|chr16:24569855-24569855|T/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	780.7965087890625	2	780.881321	1559.74809	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.73	1	114.44	113.94	114.94	0.70985								0	0	0	0.16334	1	42887	42887		1.3295	0	1		+		57685	18198	42039	42371	56308	56308					-0.009394705730983333
VESAQAGDKCD	11	Unmodified	_VESAQAGDKCD_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	A375_MHC_IP_R2	2	562.6666259765625	2	561.740228	1121.4659	-0.51195	-0.00028758	2.4466	0.0013744	1.9347	0.0010868	561.7416317349661	64.14	0.91558	64.88	64.344	65.259	0.74023					41	17	3	0	0	0	0.65093	1	24364	24364		19.362	0	1	4308300			57686	1628	42040	42372	56309	56309					-0.08997183644032702
VESDIQTRPIW	11	Unmodified	_VESDIQTRPIW_					0	0	0		tr|U7SLA2|U7SLA2_FUSNULLPSF_NHT_00031familyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01947PE=3SV=1	tr|U7SLA2|U7SLA2_FUSNULLPSF_NHT_00031familyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01947PE=3SV=1	tr|U7SLA2|U7SLA2_FUSNULLPSF_NHT_00031familyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01947PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	672.7515258789062	2	672.351334	1342.68811	-0.6002	-0.00040354	0.019014	1.2784E-05	-0.58118	-0.00039076	672.3515359986186	59.709	0.50766	59.709	59.448	59.955	0					16	9	2	0	0	0	0.78118	1	21485	21485		20.415	1.0526	1	2670300			57687	29498	42041	42373	56310	56310					0.03047838763677646
VESELHEYEIT	11	Unmodified	_VESELHEYEIT_					0	0	0			REV__ENSG00000143850|ENST00000272203|PLEKHA6	REV__ENSG00000143850|ENST00000272203|PLEKHA6	MSMS	A375_MHC_IP_R1	1	675.1317749023438	2	674.81699	1347.61943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.532	1	90.532	90.032	91.032	0								0	0	0	0.16249	1	33270	33270		5.7319	0	1		+		57688	19393	42042	42374	56311	56311					-0.04047870326712655
VESELLHTY	9	Unmodified	_VESELLHTY_					0	0	0		ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2;ENSG00000188338|ENST00000614032|SLC38A3	ENSG00000134294|ENST00000256689|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	MULTI-SECPEP	A375_MHC_IP_R1	1	546.1744384765625	2	545.774396	1089.53424	-0.33718	-0.00018402	-0.6209	-0.00033887	-0.95807	-0.00052289	545.7742609059126	53.997	0.86038	53.997	53.555	54.415	0					50	16	6	0	0	0	0.05755	1	19262	19262		71.134	33.16	1	11362000			57689	4563	42043	42375	56312	56312					-0.006945710018499085
VESELLHTY	9	Unmodified	_VESELLHTY_					0	0	0		ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2;ENSG00000188338|ENST00000614032|SLC38A3	ENSG00000134294|ENST00000256689|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	MULTI-SECPEP	A375_MHC_IP_R2	2	546.2343139648438	2	545.774396	1089.53424	-1.39	-0.00075863	0.66646	0.00036374	-0.72355	-0.0003949	545.7746224588053	53.253	0.91739	54.005	53.436	54.353	0.75105					33	17	3	0	0	0	0.20567	1	20160	20160		54.774	16.8	1	12526000			57690	4563	42043	42375	56313	56313					-0.006945710018499085
VESGDMKGSF	10	Unmodified	_VESGDMKGSF_					0	0	0		nc|ENSG00000126838|P20742-2|PZP;ENSG00000126838|ENST00000261336|PZP	nc|ENSG00000126838|P20742-2|PZP	nc|ENSG00000126838|P20742-2|PZP	MULTI-SECPEP	A375_MHC_IP_R1	1	528.1874389648438	2	528.736957	1055.45936	-0.52169	-0.00027584	-0.26282	-0.00013896	-0.78451	-0.0004148	528.7365853297422	63.812	0.30857	63.812	63.529	63.837	0					6	5	2	0	0	0	0.74754	1	23052	23052		17.113	5.4726	1	677230			57691	4063	42044	42376	56314	56314					-0.06615076804723685
VESGGGRVLL	10	Unmodified	_VESGGGRVLL_					0	0	0			REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6	REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-SECPEP	A375_MHC_IP_R1	1	494.1852111816406	2	493.785099	985.555644	-0.51411	-0.00025386	0.066509	3.2841E-05	-0.44761	-0.00022102	493.78502758671397	66.026	0.40456	66.026	65.819	66.224	0					17	7	3	0	0	0	0.1433	1	23898	23898		47.749	0	1	8894600	+		57692	19196	42045	42377	56315	56315					0.06228858817530636
VESIEKKRIRK	11	Unmodified	_VESIEKKRIRK_					0	0	0		nc|ENSG00000141582|O00257-3|CBX4;ENSG00000141582|ENST00000269397|CBX4	nc|ENSG00000141582|O00257-3|CBX4	nc|ENSG00000141582|O00257-3|CBX4	MSMS	A375_MHC_IP_R1	1	693.440673828125	2	693.432993	1384.85143	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.15	1	105.15	104.65	105.65	0								0	0	0	0.16302	1	38606	38606		2.9952	1.6657	1				57693	5263	42046	42378	56316	56316					0.17440061605338997
VESILKRPS	9	Unmodified	_VESILKRPS_					0	0	0		ENST00000259622.10_2_9:1056133-1057270:+|nuORF;DMRT2|p.S544F|1|0.22|ENSG00000173253|chr9:1057218-1057218|C/T|missense_variant;nc|ENSG00000173253|Q9Y5R5-3|DMRT2;ENST00000382255.7_2_9:1055783-1057270:+|nuORF;ENSG00000173253|ENST00000358146|DMRT2	ENST00000259622.10_2_9:1056133-1057270:+|nuORF	ENST00000259622.10_2_9:1056133-1057270:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	515.1342163085938	2	514.808574	1027.60259	-1.0797	-0.00055583	0.41748	0.00021492	-0.66221	-0.00034091	514.8087360220414	36.461	0.25288	37.232	37.157	37.41	0.7709					6	4	2	0	0	0	0.75466	1	13362	13362		12.532	10.687	1	1630300			57694	10261	42047	42379	56317	56317					0.0898971836866167
VESKERNNY	9	Unmodified	_VESKERNNY_					0	0	0			REV__nc|ENSG00000085274|Q9NPC7-3|MYNN	REV__nc|ENSG00000085274|Q9NPC7-3|MYNN	MULTI-SECPEP	A375_MHC_IP_R1	1	379.5966491699219	3	380.18776	1137.54145	0.3676	0.00013976	-1.1989	-0.0004558	-0.83129	-0.00031605	380.5217493295626	31.468	0.30379	31.468	31.363	31.667	0					6	5	2	0	0	0	0.76187	1	10143	10143		2.2828	0	1	563290	+		57695	16832	42048	42380	56318	56318					-0.021818384014068215
VESLKKLL	8	Unmodified	_VESLKKLL_					0	0	0		nc|ENSG00000035664|Q9UIK4-2|DAPK2	nc|ENSG00000035664|Q9UIK4-2|DAPK2	nc|ENSG00000035664|Q9UIK4-2|DAPK2	MULTI-SECPEP	A375_MHC_IP_R1	1	465.6686096191406	2	465.305136	928.595718	-0.32695	-0.00015213	0.065517	3.0486E-05	-0.26143	-0.00012165	465.30517220648255	83.861	0.45728	83.861	83.583	84.041	0					12	8	2	0	0	0	0.77651	1	30623	30623		34.102	0	1	1696100			57696	14462	42049	42381	56319	56319					0.1285640548809397
VESLKKLL	8	Unmodified	_VESLKKLL_					0	0	0		nc|ENSG00000035664|Q9UIK4-2|DAPK2	nc|ENSG00000035664|Q9UIK4-2|DAPK2	nc|ENSG00000035664|Q9UIK4-2|DAPK2	MULTI-SECPEP	A375_MHC_IP_R2	2	465.6684265136719	2	465.305136	928.595718	-0.65074	-0.00030279	0.16108	7.4953E-05	-0.48965	-0.00022784	465.30520403056806	82.696	0.45352	83.439	83.195	83.648	0.74293					12	8	2	0	0	0	0.86263	1	31473	31473		34.102	7.2188	1	855610			57697	14462	42049	42381	56320	56320					0.1285640548809397
VESNSRNEY	9	Unmodified	_VESNSRNEY_					0	0	0			REV__ENSG00000113263|ENST00000422843|ITK	REV__ENSG00000113263|ENST00000422843|ITK	MULTI-SECPEP	A375_MHC_IP_R1	1	549.6461791992188	2	549.246535	1096.47852	-0.56595	-0.00031084	-0.46779	-0.00025693	-1.0337	-0.00056778	549.2461314511065	60.845	0.50787	60.845	60.618	61.126	0					15	9	2	0	0	0	0.73363	1	21916	21916		15.847	14.365	1	2935700	+		57698	17772	42050	42382	56321	56321					-0.06586404189465611
VESNSRNEY	9	Unmodified	_VESNSRNEY_					0	0	0			REV__ENSG00000113263|ENST00000422843|ITK	REV__ENSG00000113263|ENST00000422843|ITK	MULTI-MATCH	A375_MHC_IP_R2	2		2	549.246535	1096.47852	-1.1207	-0.00061556	0.5732	0.00031483	-0.54754	-0.00030073	549.2467800934273	60.115	0.45542	60.863	60.553	61.008	0.74714	0.008518	0.00031657	NaN	10.824	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1483200	+		57699	17772	42050	42382							-0.06586404189465611
VESPLHSNKVD	11	Unmodified	_VESPLHSNKVD_					0	0	0			REV__nc|ENSG00000130653|Q6ZV29-3|PNPLA7;REV__nc|ENSG00000130653|Q6ZV29-2|PNPLA7	REV__nc|ENSG00000130653|Q6ZV29-3|PNPLA7	MULTI-MSMS	A375_MHC_IP_R1	1	409.2785339355469	3	408.878815	1223.61462	-0.13581	-5.5532E-05	-0.00052925	-2.164E-07	-0.13634	-5.5748E-05	408.87880731639314	24.841	0.35513	24.841	24.698	25.053	0					14	6	3	0	0	0	0.73239	1	7199	7199		6.6235	0.84002	1	6039600	+		57700	18551;27221	42051	42383	56322	56322					0.011752903211800003
VESPRSSW	8	Unmodified	_VESPRSSW_					0	0	0			REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	MULTI-MSMS	A375_MHC_IP_R1	1	474.6689453125	2	474.232699	946.450845	-0.087493	-4.1492E-05	0.026276	1.2461E-05	-0.061217	-2.9031E-05	474.23279627987125	45.273	0.35413	45.273	45.03	45.384	0					8	6	2	0	0	0	0.76654	1	15750	15750		15.847	0	1	1075800	+		57701	17938	42052	42384	56323	56323					-0.024522626590396612
VESPVICKI	9	Unmodified	_VESPVICKI_					0	0	0		nc|ENSG00000068912|Q96DZ1-2|ERLEC1;nc|ENSG00000068912|Q96DZ1-3|ERLEC1;ENSG00000068912|ENST00000185150|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	MULTI-SECPEP	A375_MHC_IP_R1	1	494.6809997558594	2	494.280803	986.547053	-0.5634	-0.00027848	0.75968	0.00037549	0.19628	9.7017E-05	494.28104294145606	66.429	1.0175	66.429	66.022	67.04	0					37	19	3	0	0	0	0.4465	1	24053	24053		38.176	11.834	1	3671300			57702	1469	42053	42385	56324	56324					0.05324168856691358
VESSFTGFL	9	Unmodified	_VESSFTGFL_					0	0	0			REV__tr|U7SV56|U7SV56_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01521PE=3SV=1	REV__tr|U7SV56|U7SV56_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01521PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	493.1664123535156	2	493.745108	985.475663	-0.57297	-0.0002829	0.37154	0.00018344	-0.20143	-9.9455E-05	493.7456394347179	107.11	0.70994	107.86	107.59	108.3	0.75436					19	13	2	0	0	0	0.3607	1	40537	40537		20.454	0	1	1526300	+		57703	28585	42054	42386	56325	56325					-0.01765627576321549
VESTLRRKY	9	Unmodified	_VESTLRRKY_					0	0	0		ENST00000487440.5_1_3:47281337-47324087:-|nuORF;nc|ENSG00000088727|Q9HAQ2-2|KIF9;ENSG00000088727|ENST00000684063|KIF9	ENST00000487440.5_1_3:47281337-47324087:-|nuORF	ENST00000487440.5_1_3:47281337-47324087:-|nuORF	MSMS	A375_MHC_IP_R2	2	576.3793334960938	2	576.330205	1150.64586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.133	1	80.878	80.378	81.378	0.74474								0	0	0	0.15486	1	30421	30421		12.532	4.6214	1				57704	1894	42055	42387	56326	56326					0.0765590814596635
VESVAGPG	8	Unmodified	_VESVAGPG_					0	0	0			REV__ENST00000496198.1_1_11:132202560-132205037:+|nuORF	REV__ENST00000496198.1_1_11:132202560-132205037:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	358.9330749511719	2	358.184686	714.354819	0.029317	1.0501E-05	4.2148	0.0015097	4.2442	0.0015202	358.18474148777517	34.676	0.45623	34.676	34.303	34.759	0					11	8	2	0	0	0	0.972	1	11429	11429		0.69038	0	1	1095700	+		57705	21702	42056	42388	56327	56327					-0.013784104991259483
VESVKIDQF	9	Unmodified	_VESVKIDQF_					0	0	0			REV__CUL5|p.V502_E504dup|1|0.85|ENSG00000166266|chr11:108094448-108094449|-/AAGTATCTG|inframe_insertion	REV__CUL5|p.V502_E504dup|1|0.85|ENSG00000166266|chr11:108094448-108094449|-/AAGTATCTG|inframe_insertion	MULTI-SECPEP	A375_MHC_IP_R1	1	533.189453125	2	532.784764	1063.55498	-0.5113	-0.00027241	-0.85167	-0.00045376	-1.363	-0.00072617	532.7846585035475	54.43	0.25345	54.43	54.314	54.567	0					7	4	2	0	0	0	0.55359	1	19409	19409		15.847	0	1	1054400	+		57706	15939	42057	42389	56328	56328					0.025740193777892273
VESVRKRPY	9	Unmodified	_VESVRKRPY_					0	0	0		ENSG00000179387|ENST00000323570|ELMOD2	ENSG00000179387|ENST00000323570|ELMOD2	ENSG00000179387|ENST00000323570|ELMOD2	MULTI-SECPEP	A375_MHC_IP_R1	1	567.7235107421875	2	567.324922	1132.63529	-0.60092	-0.00034092	-1.5284	-0.00086711	-2.1293	-0.001208	567.323623628867	32.541	0.35132	32.541	32.383	32.734	0					10	6	2	0	0	0	0.69504	1	10551	10551		12.532	2.4576	1	2236400			57707	8226	42058	42390	56329	56329					0.07427925491515452
VESVVIKNL	9	Unmodified	_VESVVIKNL_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;MYOF|p.A1785Pfs*8|1|0.41|ENSG00000138119|chr10:93323281-93323281|C/-|frameshift_variant	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	A375_MHC_IP_R1	1	500.448486328125	2	500.8055	999.596446	-0.45198	-0.00022635	0.02304	1.1539E-05	-0.42894	-0.00021481	500.8053620052424	58.801	0.56049	58.801	58.531	59.092	0					19	10	3	0	0	0	0.0099737	1	21091	21091		96.367	50.667	1	3678100			57708	4961	42059	42391	56330	56330					0.09663200137140393
VESVVIKNL	9	Unmodified	_VESVVIKNL_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;MYOF|p.A1785Pfs*8|1|0.41|ENSG00000138119|chr10:93323281-93323281|C/-|frameshift_variant	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-SECPEP	A375_MHC_IP_R2	2	500.6238098144531	2	500.8055	999.596446	-0.85821	-0.0004298	-0.19944	-9.9879E-05	-1.0576	-0.00052968	500.8052795092053	57.886	0.60805	58.635	58.221	58.829	0.74894					21	11	3	0	0	0	0.042716	1	21877	21877		86.332	14.41	1	3597800			57709	4961	42059	42391	56331	56331					0.09663200137140393
VESWRSFY	8	Unmodified	_VESWRSFY_					0	0	0			REV__nc|ENSG00000136643|Q96S38-2|RPS6KC1	REV__nc|ENSG00000136643|Q96S38-2|RPS6KC1	MULTI-MSMS	A375_MHC_IP_R2	2	537.2284545898438	2	537.256174	1072.49779	-0.98605	-0.00052976	-0.39945	-0.00021461	-1.3855	-0.00074437	537.7572486371361	66.448	1.222	67.185	66.882	68.104	0.73631					47	23	3	0	0	0	0.77643	1	25171	25171		7.9102	0.62092	1	1241400	+		57710	18951	42060	42392	56332	56332					-0.035554031079072956
VESYKNRF	8	Unmodified	_VESYKNRF_					0	0	0		tr|U7T2N7|U7T2N7_FUSNUGH26domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00514PE=4SV=1	tr|U7T2N7|U7T2N7_FUSNUGH26domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00514PE=4SV=1	tr|U7T2N7|U7T2N7_FUSNUGH26domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00514PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	521.1314086914062	2	521.769448	1041.52434	-0.50804	-0.00026508	0.34444	0.00017972	-0.16359	-8.5358E-05	521.7695065007358	73.879	0.30467	73.879	73.69	73.995	0					7	5	2	0	0	0	0.95423	1	26951	26951		4.3292	0.38484	1	968330			57711	29941	42061	42393	56333	56333					0.005242857834218739
VETARSAGLLP	11	Unmodified	_VETARSAGLLP_					0	0	0		ENST00000462948.5_1_9:138392577-138393127:+|nuORF	ENST00000462948.5_1_9:138392577-138393127:+|nuORF	ENST00000462948.5_1_9:138392577-138393127:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	556.7088623046875	2	557.316763	1112.61897	-0.30736	-0.0001713	-0.1586	-8.8393E-05	-0.46596	-0.00025969	557.3167378589436	125.93	1.1083	125.93	125.65	126.76	0					27	21	2	0	0	0	0.98524	1	48287	48287		10.8	2.644	1	6730900			57712	12209	42062	42394	56334	56334					0.06716799534774509
VETCGGUQLN	10	Unmodified	_VETCGGUQLN_					0	0	0		ENSG00000198832|ENST00000400299|SELENOM	ENSG00000198832|ENST00000400299|SELENOM	ENSG00000198832|ENST00000400299|SELENOM	MSMS	A375_MHC_IP_R1	1	536.1793823242188	2	536.18756	1070.36057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.275	1	80.275	79.775	80.775	0								0	0	0	0.15451	1	29311	29311		0	0	0				57713	9339	42063	42395	56335	56335					-0.17179923604726355
VETCSCGYYL	10	Unmodified	_VETCSCGYYL_					0	0	0		nc|ENSG00000162572|P51172-1|SCNN1D;nc|ENSG00000162572|P51172-2|SCNN1D;ENSG00000162572|ENST00000379116|SCNN1D	nc|ENSG00000162572|P51172-1|SCNN1D	nc|ENSG00000162572|P51172-1|SCNN1D	MULTI-MSMS	A375_MHC_IP_R1	1	569.1317749023438	2	569.233193	1136.45183	-0.50447	-0.00028716	1.0342	0.00058867	0.52968	0.00030151	569.2337103544859	86.401	0.96201	86.401	86.172	87.134	0					31	18	2	0	0	0	0.70651	1	31665	31665		9.3831	0	1	3385600			57714	6550	42064	42396	56336	56336					-0.11093552396664563
VETFCYGER	9	Unmodified	_VETFCYGER_					0	0	0			REV__ENST00000559133.5_3_15:48703189-48720097:-|nuORF	REV__ENST00000559133.5_3_15:48703189-48720097:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	552.6902465820312	2	552.244949	1102.47534	-0.53627	-0.00029615	0.87298	0.0004821	0.33671	0.00018595	552.2446420484201	61.695	1.0216	61.695	61.382	62.403	0					37	19	3	0	0	0	0.6324	1	22275	22275		13.042	0	1	4308000	+		57715	20653	42065	42397	56337	56337					-0.07179370567837395
VETGFYIW	8	Unmodified	_VETGFYIW_					0	0	0			REV__PITPNM1|p.H969Y|2|0.28|ENSG00000110697|chr11:67494025-67494025|G/A|missense_variant	REV__PITPNM1|p.H969Y|2|0.28|ENSG00000110697|chr11:67494025-67494025|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	508.21868896484375	2	507.750193	1013.48583	-0.65555	-0.00033285	0.27145	0.00013783	-0.3841	-0.00019503	507.75007712820144	92	0.40236	92.739	92.585	92.987	0.73902					12	7	3	0	0	0	0.70179	2	34983	34983;35005		34.187	13.316	1	997060	+		57716	27782	42066	42398	56338;56339	56338					-0.020370198510931914
VETGFYIW	8	Unmodified	_VETGFYIW_					0	0	0			REV__PITPNM1|p.H969Y|2|0.28|ENSG00000110697|chr11:67494025-67494025|G/A|missense_variant	REV__PITPNM1|p.H969Y|2|0.28|ENSG00000110697|chr11:67494025-67494025|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	508.21868896484375	2	507.750193	1013.48583	-0.65555	-0.00033285	0.27145	0.00013783	-0.3841	-0.00019503	507.75007712820144	92	0.40236	92.739	92.585	92.987	0.73902					12	7	3	0	0	0	0.85124	1	34983	34983		34.187	13.316	1	997060	+		57717	27782	42066	42398	56340	56340					-0.020370198510931914
VETKLIIKA	9	Unmodified	_VETKLIIKA_					0	0	0			REV__ENST00000462410.5_1_1:211534058-211538831:+|nuORF	REV__ENST00000462410.5_1_1:211534058-211538831:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	508.098388671875	2	507.831517	1013.64848	-0.32018	-0.0001626	-0.12122	-6.1562E-05	-0.4414	-0.00022416	507.83142802308026	52.071	0.40761	52.071	51.879	52.287	0					16	7	3	0	0	0	0.79191	1	18451	18451		1.4819	0	1	3056300	+		57718	16792	42067	42399	56341	56341					0.14220363550907678
VETLDKERFQI	11	Unmodified	_VETLDKERFQI_					0	0	0			REV__nc|ENSG00000136044|Q8NEU8-2|APPL2	REV__nc|ENSG00000136044|Q8NEU8-2|APPL2	MSMS	A375_MHC_IP_R1	1	689.7493896484375	2	689.372266	1376.72998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.881	1	92.881	92.381	93.381	0								0	0	0	0.14443	1	34139	34139		24.021	5.8742	1		+		57719	18911	42068	42400	56342	56342					0.05668394452186476
VETLLQAEV	9	Unmodified	_VETLLQAEV_					0	0	0			REV__ENSG00000125409|ENST00000395930|TEKT3	REV__ENSG00000125409|ENST00000395930|TEKT3	MSMS	A375_MHC_IP_R1	1	501.1784973144531	2	501.279315	1000.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.081	1	97.081	96.581	97.581	0								0	0	0	0.11922	1	35671	35671		36.127	0.082828	1		+		57720	18340	42069	42401	56343	56343					0.04382617003523137
VETLQHDPGY	10	Unmodified	_VETLQHDPGY_					0	0	0			REV__ENST00000599510.1_1_19:49299609-49300643:-|nuORF	REV__ENST00000599510.1_1_19:49299609-49300643:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	579.1807250976562	2	579.774928	1157.5353	-0.11989	-6.9507E-05	-4.4453	-0.0025773	-4.5652	-0.0026468	580.2732034520218	56.818	0.25459	56.818	56.701	56.956	0					5	4	2	0	0	0	0.88918	1	20327	20327		18.146	4.5315	1	1021000	+		57721	17391	42070	42402	56344	56344					-0.03716356632935458
VETPDIKDL	9	Unmodified	_VETPDIKDL_					0	0	0		nc|ENSG00000119684|Q9UHC1-2|MLH3;ENSG00000119684|ENST00000355774|MLH3	nc|ENSG00000119684|Q9UHC1-2|MLH3	nc|ENSG00000119684|Q9UHC1-2|MLH3	MULTI-MSMS	A375_MHC_IP_R2	2	515.6759643554688	2	515.276772	1028.53899	-1.0645	-0.00054851	0.17907	9.2269E-05	-0.88543	-0.00045624	515.2767086181389	56.358	0.91796	57.109	56.438	57.356	0.75015					31	17	3	0	0	0	0.091096	1	21291	21291		52.268	8.496	1	4603200			57722	3610	42071	42403	56345	56345					0.02586313140909624
VETRDNYFY	9	Unmodified	_VETRDNYFY_					0	0	0		nc|ENSG00000137103|A6NDV4|TMEM8B;ENSG00000137103|ENST00000643932|TMEM8B	nc|ENSG00000137103|A6NDV4|TMEM8B	nc|ENSG00000137103|A6NDV4|TMEM8B	MULTI-SECPEP	A375_MHC_IP_R2	2	604.1742553710938	2	603.774928	1205.5353	-1.0087	-0.00060903	-0.42243	-0.00025505	-1.4311	-0.00086408	603.7745429387244	52.968	0.91656	53.72	53.487	54.404	0.75105					33	17	3	0	0	0	0.73363	1	19976	19976		6.7232	0	1	7385300			57723	4860	42072	42404	56346	56346					-0.059243566329541864
VETRERCRRDW	11	Unmodified	_VETRERCRRDW_					0	0	0			REV__ENST00000576370.5_1_17:53045786-53045891:-|nuORF	REV__ENST00000576370.5_1_17:53045786-53045891:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.182373046875	3	502.584519	1504.73173	-0.41013	-0.00020612	-0.63473	-0.000319	-1.0449	-0.00052513	502.9179259375535	43.89	0.25375	43.89	43.808	44.061	0					9	4	3	0	0	0	0.99778	1	15311	15311		6.2344	2.6473	1	1952200	+		57724	26312	42073	42405	56347	56347					-0.0004487501087169221
VETRERCRRDW	11	Unmodified	_VETRERCRRDW_					0	0	0			REV__ENST00000576370.5_1_17:53045786-53045891:-|nuORF	REV__ENST00000576370.5_1_17:53045786-53045891:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	502.1820068359375	3	502.584519	1504.73173	-0.5071	-0.00025486	-0.72715	-0.00036546	-1.2343	-0.00062032	502.58426278638575	43.254	0.30405	44.026	43.826	44.13	0.7724					10	5	2	0	0	0	0.99971	1	16085	16085		2.084	0	1	1329700	+		57725	26312	42073	42405	56348	56348					-0.0004487501087169221
VETRINERRF	10	Unmodified	_VETRINERRF_					0	0	0			REV__ENSG00000130005|ENST00000252288|GAMT	REV__ENSG00000130005|ENST00000252288|GAMT	MULTI-MSMS	A375_MHC_IP_R2	2	440.97747802734375	3	440.57747	1318.71058	-0.54775	-0.00024132	0.28801	0.00012689	-0.25974	-0.00011443	440.5775673135802	26.9	0.30854	27.56	27.414	27.722	0.65992					13	5	4	0	0	0	0.72061	1	9171	9171		3.0723	0	1	2309500	+		57726	18514	42074	42406	56349	56349					0.06397482951933853
VETRINERRF	10	Unmodified	_VETRINERRF_					0	0	0			REV__ENSG00000130005|ENST00000252288|GAMT	REV__ENSG00000130005|ENST00000252288|GAMT	MULTI-MATCH	A375_MHC_IP_R1	1		3	440.57747	1318.71058	-0.21762	-9.588E-05	-0.040603	-1.7889E-05	-0.25823	-0.00011377	440.57731995490934	27.637	0.3541	27.637	27.432	27.786	0	0.038454	-0.00017949	NaN	3.0723	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1724900	+		57727	18514	42074	42406							0.06397482951933853
VETRVFLQYL	10	Unmodified	_VETRVFLQYL_					0	0	0		nc|ENSG00000120063|Q14344-2|GNA13;ENSG00000120063|ENST00000439174|GNA13	nc|ENSG00000120063|Q14344-2|GNA13	nc|ENSG00000120063|Q14344-2|GNA13	MSMS	A375_MHC_IP_R1	1	634.27978515625	2	634.355888	1266.69722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.288	1	79.288	78.788	79.788	0								0	0	0	0.15308	1	28941	28941		10.824	1.4408	1				57728	3648	42075	42407	56350	56350					0.07454232120016968
VETSYVKVL	9	Unmodified	_VETSYVKVL_					0	0	0		ENSG00000213401|ENST00000393869|MAGEA12;chrX:152733859-152736087|323|82.7|0.12|9.43|+|ENST00000357916|MAGEA12,MAGEA12;ENSG00000221867|ENST00000370278|MAGEA3;chrX:152698829-152700558|283|12.93|0.02|9.51|+|ENST00000598245|MAGEA3,MAGEA3	ENSG00000213401|ENST00000393869|MAGEA12;ENSG00000221867|ENST00000370278|MAGEA3	ENSG00000221867|ENST00000370278|MAGEA3	MULTI-SECPEP	A375_MHC_IP_R1	1	519.6973876953125	2	519.297507	1036.58046	-0.49521	-0.00025716	0.35939	0.00018663	-0.13582	-7.0531E-05	519.2976444157956	59.883	0.71254	59.883	59.599	60.312	0					38	13	4	0	0	0	0.061442	1	21526	21526		72.968	38.566	1	17840000			57729	523;521	42076	42408	56351	56351					0.06363493900221329
VETSYVKVL	9	Unmodified	_VETSYVKVL_					0	0	0		ENSG00000213401|ENST00000393869|MAGEA12;chrX:152733859-152736087|323|82.7|0.12|9.43|+|ENST00000357916|MAGEA12,MAGEA12;ENSG00000221867|ENST00000370278|MAGEA3;chrX:152698829-152700558|283|12.93|0.02|9.51|+|ENST00000598245|MAGEA3,MAGEA3	ENSG00000213401|ENST00000393869|MAGEA12;ENSG00000221867|ENST00000370278|MAGEA3	ENSG00000221867|ENST00000370278|MAGEA3	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1739501953125	2	519.297507	1036.58046	-1.0701	-0.00055571	-0.24407	-0.00012674	-1.3142	-0.00068245	519.2973526128727	59.072	0.81044	59.819	59.438	60.249	0.74714					37	15	4	0	0	0	0.042716	1	22310	22310		96.367	44.737	1	16743000			57730	523;521	42076	42408	56352	56352					0.06363493900221329
VETTLLLSA	9	Unmodified	_VETTLLLSA_					0	0	0			REV__tr|U7SSC0|U7SSC0_FUSNUChaperoninGroELOS=FusobacteriumnucleatumCTI-5OX=1316586GN=groELPE=3SV=1	REV__tr|U7SSC0|U7SSC0_FUSNUChaperoninGroELOS=FusobacteriumnucleatumCTI-5OX=1316586GN=groELPE=3SV=1	MSMS	A375_MHC_IP_R2	2	473.6841735839844	2	473.776408	945.538263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.871	1	88.603	88.103	89.103	0.7318								0	0	0	0.14359	1	33430	33430		28.487	0	1		+		57731	28422	42077	42409	56353	56353					0.06331518491867882
VETVLDDNY	9	Unmodified	_VETVLDDNY_					0	0	0		tr|U7SXB4|U7SXB4_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00935PE=4SV=1	tr|U7SXB4|U7SXB4_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00935PE=4SV=1	tr|U7SXB4|U7SXB4_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00935PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	533.6676025390625	2	534.248212	1066.48187	-0.73675	-0.00039361	-0.35372	-0.00018897	-1.0905	-0.00058258	534.2478915399503	73.626	1.0188	74.361	73.836	74.855	0.73541					57	19	5	0	0	0	0.13797	1	27874	27874		43.858	0	1	38168000			57732	29825	42078	42410	56354	56354					-0.04871154135480538
VEVAQLKENKP	11	Unmodified	_VEVAQLKENKP_					0	0	0			REV__ENSG00000153048|ENST00000311052|CARHSP1	REV__ENSG00000153048|ENST00000311052|CARHSP1	MULTI-MSMS	A375_MHC_IP_R1	1	628.3942260742188	2	627.856252	1253.69795	-0.34362	-0.00021574	-2.1243	-0.0013337	-2.4679	-0.0015495	628.3559536314968	108.23	0.35627	108.23	108.1	108.46	0					8	6	2	0	0	0	0.72801	1	39721	39721		10.8	0.64894	1	914610	+		57733	19823	42079	42411	56355	56355					0.08125026769039323
VEVDAVHKHY	10	Unmodified	_VEVDAVHKHY_					0	0	0		nc|ENSG00000205336|Q9Y653-4|ADGRG1;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;nc|ENSG00000205336|Q9Y653-5|ADGRG1;ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF	nc|ENSG00000205336|Q9Y653-4|ADGRG1	nc|ENSG00000205336|Q9Y653-4|ADGRG1	MULTI-SECPEP	A375_MHC_IP_R1	1	399.9402160644531	3	399.540134	1195.59857	-0.27868	-0.00011134	0.45261	0.00018084	0.17393	6.9493E-05	399.54033214514783	19.817	0.40828	19.817	19.571	19.98	0					11	7	2	0	0	0	0.22459	1	5015	5015		49.742	31.021	1	3294700			57734	9509	42080	42412	56356	56356					0.008596288749458836
VEVDCWDGP	9	Unmodified	_VEVDCWDGP_					0	0	0		nc|ENSG00000149527|O75038-2|PLCH2;nc|ENSG00000114805|Q4KWH8-3|PLCH1;nc|ENSG00000114805|Q4KWH8-4|PLCH1;PLCH1|p.I1107Tfs*27|1|0.08|ENSG00000114805|chr3:155482730-155482730|A/-|frameshift_variant;ENST00000343889.8_1_1:2411150-2434522:+|nuORF;nc|ENSG00000149527|O75038-4|PLCH2;nc|ENSG00000149527|O75038-3|PLCH2;ENSG00000149527|ENST00000378486|PLCH2;nc|ENSG00000114805|Q4KWH8-2|PLCH1;ENSG00000114805|ENST00000460012|PLCH1;nc|ENSG00000114805|Q4KWH8|PLCH1	nc|ENSG00000149527|O75038-2|PLCH2	nc|ENSG00000149527|O75038-2|PLCH2	MSMS	A375_MHC_IP_R1	1	510.14581298828125	2	510.210575	1018.4066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.774	1	54.774	54.274	55.274	0								0	0	0	0.15486	1	19571	19571		11.64	3.047	1				57735	14674	42081	42413	56357	56357					-0.10187034867544753
VEVDLEHEW	9	Unmodified	_VEVDLEHEW_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-SECPEP	A375_MHC_IP_R1	1	578.6510620117188	2	578.269478	1154.5244	-0.16759	-9.6911E-05	-0.2965	-0.00017145	-0.46408	-0.00026837	578.2693654756531	77.534	0.55814	77.534	77.286	77.844	0					13	10	2	0	0	0	0.60917	1	28280	28280		19.257	0	1	1324600			57736	1806	42082	42414	56358	56358					-0.046677590072249586
VEVEGDNRY	9	Unmodified	_VEVEGDNRY_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-MSMS	A375_MHC_IP_R1	1	541.1510620117188	2	540.751453	1079.48835	-0.68528	-0.00037056	-0.492	-0.00026605	-1.1773	-0.00063661	540.7511500873242	25.393	0.91317	25.393	25.154	26.068	0					45	16	4	0	0	0	0.014789	1	7405	7405		90.135	40.581	1	32428000			57737	3557	42083	42415	56359	56359					-0.04821216184086552
VEVEGDNRY	9	Unmodified	_VEVEGDNRY_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-MSMS	A375_MHC_IP_R2	2	541.1504516601562	2	540.751453	1079.48835	-1.2606	-0.00068165	-0.30765	-0.00016636	-1.5682	-0.00084801	540.751265374064	24.898	1.7286	25.542	25.364	27.093	0.64368					61	33	3	0	0	0	0.014789	1	8258	8258		90.135	46.363	1	37334000			57738	3557	42083	42415	56360	56360					-0.04821216184086552
VEVENQGVFQ	10	Unmodified	_VEVENQGVFQ_					0	0	0		ENSG00000132182|ENST00000254508|NUP210;nc|ENSG00000132182|Q8TEM1-2|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MSMS	A375_MHC_IP_R2	2	574.7218017578125	2	574.782753	1147.55095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.093	1	98.853	98.353	99.353	0.75977								0	0	0	0.14971	1	37220	37220		18.373	1.2602	1				57739	4379	42084	42416	56361	56361					-0.016920701159051532
VEVFALRRLLQ	11	Unmodified	_VEVFALRRLLQ_					0	0	0		ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	MSMS	A375_MHC_IP_R1	1	672.5068969726562	2	672.411529	1342.8085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.427	1	96.427	95.927	96.927	0								0	0	0	0.16334	1	35438	35438		1.3295	0.13619	1				57740	2608	42085	42417	56362	56362					0.1508129154794915
VEVGDRTSW	9	Unmodified	_VEVGDRTSW_					0	0	0		ENSG00000154370|ENST00000284551|TRIM11;nc|ENSG00000154370|Q96F44-3|TRIM11	ENSG00000154370|ENST00000284551|TRIM11	ENSG00000154370|ENST00000284551|TRIM11	MULTI-MSMS	A375_MHC_IP_R1	1	525.1564331054688	2	524.756538	1047.49852	-0.43269	-0.00022706	-0.99405	-0.00052163	-1.4267	-0.00074869	524.7558789891607	42.136	0.55513	42.136	41.982	42.537	0					17	10	2	0	0	0	0.058226	1	14588	14588		61.09	3.8408	1	3100500			57741	6084	42086	42418	56363	56363					-0.023326084588461526
VEVGDTRSW	9	Unmodified	_VEVGDTRSW_					0	0	0		nc|ENSG00000113327|P18507-1|GABRG2;ENSG00000113327|ENST00000639213|GABRG2;nc|ENSG00000113327|P18507-3|GABRG2	nc|ENSG00000113327|P18507-1|GABRG2	nc|ENSG00000113327|P18507-1|GABRG2	MULTI-MSMS	A375_MHC_IP_R1	1	525.15576171875	2	524.756538	1047.49852	-0.33533	-0.00017597	-0.2116	-0.00011104	-0.54693	-0.000287	524.7563113222898	43.348	0.50946	43.348	43.043	43.553	0					22	9	3	0	0	0	0.12748	1	15071	15071		45.74	3.7843	1	2751600			57742	3142	42087	42419	56364	56364					-0.023326084588461526
VEVGDTRSW	9	Unmodified	_VEVGDTRSW_					0	0	0		nc|ENSG00000113327|P18507-1|GABRG2;ENSG00000113327|ENST00000639213|GABRG2;nc|ENSG00000113327|P18507-3|GABRG2	nc|ENSG00000113327|P18507-1|GABRG2	nc|ENSG00000113327|P18507-1|GABRG2	MULTI-MSMS	A375_MHC_IP_R2	2	525.15576171875	2	524.756538	1047.49852	-0.62708	-0.00032906	0.44525	0.00023365	-0.18183	-9.5418E-05	524.7557890137931	41.604	0.71189	42.378	41.895	42.607	0.77451					23	13	2	0	0	0	0.068071	1	15375	15375		57.249	0	1	3911400			57743	3142	42087	42419	56365	56365					-0.023326084588461526
VEVGDTRSW	9	Unmodified	_VEVGDTRSW_					0	0	0		nc|ENSG00000113327|P18507-1|GABRG2;ENSG00000113327|ENST00000639213|GABRG2;nc|ENSG00000113327|P18507-3|GABRG2	nc|ENSG00000113327|P18507-1|GABRG2	nc|ENSG00000113327|P18507-1|GABRG2	MULTI-MSMS	A375_MHC_IP_R2	2	525.155517578125	2	524.756538	1047.49852	-0.43325	-0.00022735	0.048295	2.5343E-05	-0.38496	-0.00020201	524.7562663731858	42.595	0.45716	43.368	43.116	43.573	0.7724					19	8	3	0	0	0	0.21241	1	15885	15885		37.075	3.6297	1	2871600			57744	3142	42087	42419	56366	56366					-0.023326084588461526
VEVKRLPA	8	Unmodified	_VEVKRLPA_					0	0	0			REV__ENSG00000156232|ENST00000286760|WHAMM	REV__ENSG00000156232|ENST00000286760|WHAMM	MULTI-SECPEP	A375_MHC_IP_R1	1	456.6871643066406	2	456.287277	910.560001	-0.1411	-6.4384E-05	0.097665	4.4563E-05	-0.04344	-1.9821E-05	456.2872933481163	62.737	0.92264	62.737	62.454	63.377	0					44	17	3	0	0	0	0.69059	1	22636	22636		38.151	2.107	1	13865000	+		57745	19970	42088	42420	56367	56367					0.10114368031088361
VEVKTKKLKKL	11	Unmodified	_VEVKTKKLKKL_					0	0	0		ENSG00000084731|ENST00000264712|KIF3C;ENST00000488341.5_1_2:26174656-26179274:-|nuORF;ENST00000475453.1_1_2:26177134-26203442:-|nuORF	ENSG00000084731|ENST00000264712|KIF3C	ENSG00000084731|ENST00000264712|KIF3C	MSMS	A375_MHC_IP_R1	1	657.1831665039062	2	657.44758	1312.88061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.89	1	100.89	100.39	101.39	0								0	0	0	0.16337	1	37083	37083		1.1933	0.735	1				57746	1802	42089	42421	56368	56368					0.2366820590164025
VEVLKVVN	8	Unmodified	_VEVLKVVN_					0	0	0			REV__nc|ENSG00000110931|Q96RR4-7|CAMKK2	REV__nc|ENSG00000110931|Q96RR4-7|CAMKK2	MULTI-SECPEP	A375_MHC_IP_R2	2	449.6174011230469	2	450.28166	898.548768	-0.21132	-9.5152E-05	0.070817	3.1888E-05	-0.1405	-6.3264E-05	450.28146768807073	64.264	0.30598	65.004	64.8	65.106	0.74022					7	5	2	0	0	0	0.972	1	24323	24323		4.756	0	1	336470	+		57747	27172	42090	42422	56369	56369					0.09543545936946884
VEVLKVVN	8	Unmodified	_VEVLKVVN_					0	0	0			REV__nc|ENSG00000110931|Q96RR4-7|CAMKK2	REV__nc|ENSG00000110931|Q96RR4-7|CAMKK2	MULTI-MATCH	A375_MHC_IP_R1	1		2	450.28166	898.548768	-0.24279	-0.00010932	0.095753	4.3116E-05	-0.14704	-6.6208E-05	450.281578064389	65.168	0.30515	65.168	65.055	65.36	0	0.082014	1.1009E-05	NaN	4.756	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	668170	+		57748	27172	42090	42422							0.09543545936946884
VEVLRSPVLL	10	Unmodified	_VEVLRSPVLL_					0	0	0		AFAP1L1|p.P327L|1|0.14|ENSG00000157510|chr5:149312164-149312164|C/T|missense_variant	AFAP1L1|p.P327L|1|0.14|ENSG00000157510|chr5:149312164-149312164|C/T|missense_variant	AFAP1L1|p.P327L|1|0.14|ENSG00000157510|chr5:149312164-149312164|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	563.643798828125	2	562.855524	1123.69649	-0.44463	-0.00025026	-1.2485	-0.0007027	-1.6931	-0.00095297	562.8554620152829	90.435	0.25291	91.169	91.058	91.311	0.7345					6	4	2	0	0	0	0.88918	1	34375	34375		13.042	3.6593	1	715550			57749	80	42091	42423	56370	56370					0.13959437470953162
VEVLVPPGY	9	Unmodified	_VEVLVPPGY_					0	0	0		chr2:27239232-27239697|243|10.68|0.39|4.78|+|0|CAD,CAD|1	chr2:27239232-27239697|243|10.68|0.39|4.78|+|0|CAD,CAD|1	chr2:27239232-27239697|243|10.68|0.39|4.78|+|0|CAD,CAD|1	MSMS	A375_MHC_IP_R2	2	486.620849609375	2	486.773668	971.532783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.014	1	49.771	49.271	50.271	0.75737								0	0	0	0.15486	1	18411	18411		8.5933	0	1				57750	465	42092	42424	56371	56371					0.0458783970004788
VEVPFDLHRY	10	Unmodified	_VEVPFDLHRY_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000470482.5_1_2:242174669-242176035:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	A375_MHC_IP_R1	1	425.9559020996094	3	425.555784	1273.64552	0.072505	3.0855E-05	0.39347	0.00016744	0.46598	0.0001983	425.55590194260213	72.197	0.55663	72.197	71.917	72.474	0					25	10	3	0	0	0	0.24209	1	26275	26275		44.945	29.988	1	2940000			57751	3330	42093	42425	56372	56372					0.0196448842607424
VEVPFDLHRY	10	Unmodified	_VEVPFDLHRY_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000470482.5_1_2:242174669-242176035:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	A375_MHC_IP_R2	2	425.9555969238281	3	425.555784	1273.64552	-0.42424	-0.00018054	0.3975	0.00016916	-0.026741	-1.138E-05	425.5557754868391	71.421	1.3166	72.155	71.908	73.225	0.73421					37	25	3	0	0	0	0.64262	1	27100	27100		41.347	23.007	1	3912900			57752	3330	42093	42425	56373	56373					0.0196448842607424
VEVQHRWIS	9	Unmodified	_VEVQHRWIS_					0	0	0			REV__nc|ENSG00000173276|Q9ULJ3-2|ZBTB21	REV__nc|ENSG00000173276|Q9ULJ3-2|ZBTB21	MULTI-SECPEP	A375_MHC_IP_R1	1	577.7080688476562	2	577.309272	1152.60399	-0.17929	-0.00010351	-1.9571	-0.0011298	-2.1363	-0.0012333	577.3079597650802	55.276	0.40593	55.276	55.025	55.431	0					12	7	2	0	0	0	0.63327	1	19767	19767		18.146	3.3081	1	3191600	+		57753	21213	42094	42426	56374	56374					0.03379352457409368
VEVRISRE	8	Unmodified	_VEVRISRE_					0	0	0		nc|ENSG00000204618|Q9H2S5-3|RNF39;ENSG00000204618|ENST00000244360|RNF39;nc|ENSG00000204618|Q9H2S5-2|RNF39;nc|ENSG00000204618|Q9H2S5|RNF39	nc|ENSG00000204618|Q9H2S5-3|RNF39	nc|ENSG00000204618|Q9H2S5-3|RNF39	MULTI-MSMS	A375_MHC_IP_R2	2	494.6822814941406	2	494.282723	986.550893	-0.39478	-0.00019513	-0.13778	-6.8104E-05	-0.53256	-0.00026324	494.2825620672251	118.44	1.2651	119.04	118.44	119.71	0.60909					46	24	3	0	0	0	0.77717	1	45234	45234		5.2307	0	1	21257000			57754	14862	42095	42427	56375	56375					0.057079746747604077
VEVRKLQKI	9	Unmodified	_VEVRKLQKI_					0	0	0			REV__ENSG00000170807|ENST00000458573|LMOD2	REV__ENSG00000170807|ENST00000458573|LMOD2	MULTI-MSMS	A375_MHC_IP_R1	1	371.9293518066406	3	371.576519	1111.70773	-0.041259	-1.5331E-05	-0.019154	-7.1171E-06	-0.060413	-2.2448E-05	371.5764144172434	29.655	2.5184	29.655	29.098	31.616	0					123	49	4	0	0	0	0.11638	1	9446	9446		47.732	1.9921	1	98515000	+		57755	21020	42096	42428	56376	56376					0.15634259565081265
VEVRKLQKI	9	Unmodified	_VEVRKLQKI_					0	0	0			REV__ENSG00000170807|ENST00000458573|LMOD2	REV__ENSG00000170807|ENST00000458573|LMOD2	MULTI-SECPEP	A375_MHC_IP_R1	1	371.9764709472656	3	371.576519	1111.70773	-0.041259	-1.5331E-05	-0.019154	-7.1171E-06	-0.060413	-2.2448E-05	371.5764144172434	29.655	2.5184	29.655	29.098	31.616	0					123	49	4	0	0	0	0.11887	1	9509	9509		55.235	0	1	98515000	+		57756	21020	42096	42428	56377	56377					0.15634259565081265
VEVRRVPPR	9	Unmodified	_VEVRRVPPR_					0	0	0		nc|ENSG00000153707|P23468-2|PTPRD	nc|ENSG00000153707|P23468-2|PTPRD	nc|ENSG00000153707|P23468-2|PTPRD	MULTI-SECPEP	A375_MHC_IP_R1	1	369.5844421386719	3	369.896363	1106.66726	0.3625	0.00013409	1.9315	0.00071447	2.294	0.00084856	369.8969891665377	20.231	0.25453	20.231	20.079	20.334	0					6	4	2	0	0	0	0.81166	1	5176	5176		1.0715	1.0715	1	493530			57757	14689	42097	42429	56378	56378					0.11819337965334853
VEVRTLKSF	9	Unmodified	_VEVRTLKSF_					0	0	0		ENST00000491169.1_1_1:207070885-207076401:+|nuORF;ENST00000367095.7_1_1:207071131-207076401:+|nuORF;ENSG00000162892|ENST00000294984|IL24;nc|ENSG00000162892|Q13007-2|IL24	ENST00000491169.1_1_1:207070885-207076401:+|nuORF	ENST00000491169.1_1_1:207070885-207076401:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	360.6131896972656	3	360.213358	1077.61824	-0.31586	-0.00011378	-0.3996	-0.00014394	-0.71546	-0.00025772	360.21326608651606	39.258	0.45743	40.032	39.812	40.269	0.77451					17	8	3	0	0	0	0.3489	1	14520	14520		27.223	5.6331	1	3402500			57758	6609	42098	42430	56379	56379					0.08254004885725408
VEVSGEPLW	9	Unmodified	_VEVSGEPLW_					0	0	0			REV__NEB|p.V4554Gfs*42|1|0.12|ENSG00000183091|chr2:151562738-151562739|-/CC|frameshift_variant	REV__NEB|p.V4554Gfs*42|1|0.12|ENSG00000183091|chr2:151562738-151562739|-/CC|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	508.6928405761719	2	508.258382	1014.50221	-0.41003	-0.0002084	-0.34063	-0.00017313	-0.75066	-0.00038153	508.258193533464	74.679	0.45729	74.679	74.4	74.857	0					22	8	3	0	0	0	0.64808	1	27114	27114		11.64	0	1	1167600	+		57759	21736	42099	42431	56380	56380					-0.004459386849816838
VEVSPATERQW	11	Unmodified	_VEVSPATERQW_					0	0	0		RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant;ENSG00000244462|ENST00000374114|RBM12	RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant	RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	651.7276611328125	2	651.327859	1300.64116	-0.31857	-0.00020749	-0.2423	-0.00015782	-0.56087	-0.00036531	651.3278646395592	47.468	0.45543	47.468	47.263	47.718	0					15	8	2	0	0	0	0.10656	1	16739	16739		68.76	26.804	1	3039800			57760	9821	42100	42432	56381	56381					0.002869792125238746
VEVSPATERQW	11	Unmodified	_VEVSPATERQW_					0	0	0		RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant;ENSG00000244462|ENST00000374114|RBM12	RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant	RBM12|p.K889Nfs*29|1|0.49|ENSG00000244462|chr20:35652656-35652656|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	651.7278442382812	2	651.327859	1300.64116	-0.57062	-0.00037166	0.37809	0.00024626	-0.19253	-0.0001254	651.328010063378	46.803	0.50693	47.564	47.361	47.867	0.76128					15	9	2	0	0	0	0.35071	1	17584	17584		42.835	14.341	1	2718200			57761	9821	42100	42432	56382	56382					0.002869792125238746
VEVSQELTY	9	Unmodified	_VEVSQELTY_					0	0	0		ENSG00000174358|ENST00000304460|SLC6A19	ENSG00000174358|ENST00000304460|SLC6A19	ENSG00000174358|ENST00000304460|SLC6A19	MULTI-MSMS	A375_MHC_IP_R2	2	534.6656494140625	2	534.266404	1066.51826	-1.1754	-0.00062798	-0.36018	-0.00019243	-1.5356	-0.00082042	534.2662519788574	38.479	0.45531	39.254	38.946	39.401	0.77451					16	8	3	0	0	0	0.19747	1	14195	14195		38.176	2.0485	1	2768500			57762	7872	42101	42433	56383	56383					-0.012342772387455625
VEVTARAGLW	10	Unmodified	_VEVTARAGLW_					0	0	0		ATHL1|p.P653L|1|0.4|ENSG00000142102|chr11:294416-294416|C/T|missense_variant	ATHL1|p.P653L|1|0.4|ENSG00000142102|chr11:294416-294416|C/T|missense_variant	ATHL1|p.P653L|1|0.4|ENSG00000142102|chr11:294416-294416|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	367.6325378417969	3	367.873224	1100.59784	-0.075798	-2.7884E-05	-0.89708	-0.00033001	-0.97287	-0.00035789	367.87277847781803	26.707	0.76692	27.366	27.109	27.876	0.65992					21	14	2	0	0	0	0.90513	1	9134	9134		4.7159	0	1	2102100			57763	199	42102	42434	56384	56384					0.051568342258860866
VEVYRLVRL	9	Unmodified	_VEVYRLVRL_					0	0	0			REV__ENSG00000127412|ENST00000265310|TRPV5	REV__ENSG00000127412|ENST00000265310|TRPV5	MULTI-SECPEP	A375_MHC_IP_R2	2	382.2727966308594	3	382.904636	1145.69208	-0.13283	-5.0863E-05	-0.1232	-4.7173E-05	-0.25603	-9.8036E-05	382.9045033596699	30.975	0.40636	31.694	31.517	31.923	0.71857					10	7	2	0	0	0	0.80535	1	10992	10992		0.86438	0	1	1184600	+		57764	18418	42103	42435	56385	56385					0.12505973048041596
VEVYTRVSR	9	Unmodified	_VEVYTRVSR_					0	0	0			REV__nc|ENSG00000137841|Q00722-3|PLCB2	REV__nc|ENSG00000137841|Q00722-3|PLCB2	MULTI-MSMS	A375_MHC_IP_R1	1	555.3338012695312	2	554.809105	1107.60366	-0.17467	-9.6909E-05	0.080101	4.4441E-05	-0.094569	-5.2468E-05	554.8091817365944	49.484	0.45743	49.484	49.285	49.743	0					11	8	2	0	0	0	0.67332	1	17466	17466		9.3831	0.63772	1	1336300	+		57765	19042	42104	42436	56386	56386					0.0541593273756007
VEVYTRVSR	9	Unmodified	_VEVYTRVSR_					0	0	0			REV__nc|ENSG00000137841|Q00722-3|PLCB2	REV__nc|ENSG00000137841|Q00722-3|PLCB2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	554.809105	1107.60366	-0.17467	-9.6909E-05	0.080101	4.4441E-05	-0.094569	-5.2468E-05	554.8091817365944	49.484	0.45743	49.484	49.285	49.743	0	0	0	NaN	9.3831	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1336300	+		57766	19042	42104	42436							0.0541593273756007
VEWEAKKRKHY	11	Unmodified	_VEWEAKKRKHY_					0	0	0			REV__nc|ENSG00000177706|Q8IXL6-2|FAM20C	REV__nc|ENSG00000177706|Q8IXL6-2|FAM20C	MSMS	A375_MHC_IP_R2	2	737.3233642578125	2	737.401692	1472.78883	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.88	1	138.94	138.44	139.44	0.059906								0	0	0	0.16258	1	54439	54439		5.2969	2.5617	1		+		57767	21470	42105	42437	56387	56387					0.07134915537176312
VEWEGRSLL	9	Unmodified	_VEWEGRSLL_					0	0	0		nc|ENSG00000170291|Q8TE02-3|ELP5;nc|ENSG00000170291|Q8TE02-2|ELP5;ENSG00000170291|ENST00000396628|ELP5;nc|ENSG00000170291|Q8TE02-1|ELP5	nc|ENSG00000170291|Q8TE02-3|ELP5	nc|ENSG00000170291|Q8TE02-3|ELP5	MULTI-MSMS	A375_MHC_IP_R1	1	545.1900024414062	2	544.790381	1087.56621	-0.40102	-0.00021847	-0.52535	-0.0002862	-0.92637	-0.00050468	544.790153646991	78.429	0.45533	78.429	78.201	78.657	0					17	8	3	0	0	0	0.22013	1	28623	28623		36.506	3.7205	1	9149900			57768	7490	42106	42438	56388	56388					0.025928414719601278
VEWEGRSLL	9	Unmodified	_VEWEGRSLL_					0	0	0		nc|ENSG00000170291|Q8TE02-3|ELP5;nc|ENSG00000170291|Q8TE02-2|ELP5;ENSG00000170291|ENST00000396628|ELP5;nc|ENSG00000170291|Q8TE02-1|ELP5	nc|ENSG00000170291|Q8TE02-3|ELP5	nc|ENSG00000170291|Q8TE02-3|ELP5	MULTI-MSMS	A375_MHC_IP_R2	2	545.1901245117188	2	544.790381	1087.56621	-0.81845	-0.00044588	-0.10383	-5.6564E-05	-0.92227	-0.00050245	544.7903266905307	77.606	0.66557	78.349	78.01	78.676	0.74293					16	12	2	0	0	0	0.11715	2	29467	29436;29467		47.594	8.0484	1	8493600			57769	7490	42106	42438	56389;56390	56390					0.025928414719601278
VEWEGTTPY	9	Unmodified	_VEWEGTTPY_					0	0	0		ENSG00000119403|ENST00000373896|PHF19	ENSG00000119403|ENST00000373896|PHF19	ENSG00000119403|ENST00000373896|PHF19	MULTI-SECPEP	A375_MHC_IP_R2	2	541.6452026367188	2	541.245472	1080.47639	-0.81094	-0.00043892	0.29571	0.00016005	-0.51523	-0.00027887	541.2455261480512	73.18	0.86575	73.915	73.581	74.447	0.73541					39	16	4	0	0	0	0.064992	1	27746	27746		58.679	26.373	1	7795100			57770	3591	42107	42439	56391	56391					-0.06062832927273121
VEWFSFHVVKW	11	Unmodified	_VEWFSFHVVKW_					0	0	0			REV__ENST00000523232.1_1_8:137528301-137531442:+|nuORF	REV__ENST00000523232.1_1_8:137528301-137531442:+|nuORF	MSMS	A375_MHC_IP_R2	2	732.3765258789062	2	732.377155	1462.73976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.846	1	78.589	78.089	79.089	0.74293								0	0	0	0.16302	1	29561	29561		2.9952	0	1		+		57771	25740	42108	42440	56392	56392					0.026896272482190398
VEWLGLLARQP	11	Unmodified	_VEWLGLLARQP_					0	0	0			REV__ENST00000482723.1_1_17:72439553-72445018:+|nuORF	REV__ENST00000482723.1_1_17:72439553-72445018:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	640.9896850585938	2	641.36933	1280.72411	-0.73921	-0.00047411	0.89457	0.00057375	0.15536	9.9645E-05	641.3692146561643	77.766	0.56107	78.509	78.265	78.827	0.74294					16	10	3	0	0	0	0.99331	1	29576	29576		5.2969	0	1	2882200	+		57772	25284	42109	42441	56393	56393					0.09497340731172699
VEWLNFDPS	9	Unmodified	_VEWLNFDPS_					0	0	0		ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	MULTI-MSMS	A375_MHC_IP_R2	2	553.187255859375	2	553.761289	1105.50803	-1.1208	-0.00062067	0.95322	0.00052786	-0.16761	-9.2816E-05	553.7619896358777	22.937	0.96496	23.567	23.164	24.129	0.63015					32	18	3	0	0	0	0.41409	1	7271	7271		24.021	5.8742	1	3742200			57773	4746	42110	42442	56394	56394					-0.04050840173340475
VEWYYKGLTFT	11	Unmodified	_VEWYYKGLTFT_					0	0	0			REV__TRIM49|p.S338L|1|0.52|ENSG00000168930|chr11:89798476-89798476|G/A|missense_variant	REV__TRIM49|p.S338L|1|0.52|ENSG00000168930|chr11:89798476-89798476|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	469.4751892089844	3	469.571211	1405.6918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.12	1	57.871	57.371	58.371	0.75015								0	0	0	0.16247	1	21596	21596		5.8681	0.34485	1		+		57774	28903	42111	42443	56395	56395					0.005185085374932896
VEYDMDEEDY	10	Unmodified	_VEYDMDEEDY_					0	0	0		BRD1|p.G784Afs*109|1|0.19|ENSG00000100425|chr22:49794042-49794042|C/-|frameshift_variant;nc|ENSG00000100425|O95696|BRD1;BRD1|p.V933Cfs*14|1|0.27|ENSG00000100425|chr22:49776091-49776091|C/-|frameshift_variant;ENSG00000100425|ENST00000404760|BRD1;BRPF1|p.V328Cfs*15|1|0.2|ENSG00000156983|chr3:9739380-9739387|TGTGGATT/-|frameshift_variant;nc|ENSG00000156983|P55201-4|BRPF1;nc|ENSG00000156983|P55201-3|BRPF1;nc|ENSG00000156983|P55201|BRPF1;ENSG00000156983|ENST00000383829|BRPF1	BRD1|p.G784Afs*109|1|0.19|ENSG00000100425|chr22:49794042-49794042|C/-|frameshift_variant;nc|ENSG00000156983|P55201-4|BRPF1	BRD1|p.G784Afs*109|1|0.19|ENSG00000100425|chr22:49794042-49794042|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	654.6326904296875	2	654.234641	1306.45473	-0.62397	-0.00040822	-1.7538	-0.0011474	-2.3778	-0.0015556	654.2338914495873	114.15	0.70119	114.86	114.38	115.08	0.70984					27	13	3	0	0	0	0.71245	1	43027	43027		6.7232	1.4263	1	3873900			57775	249;6221	42112	42444	56396	56396					-0.1862405052881968
VEYEAVADLFE	11	Unmodified	_VEYEAVADLFE_					0	0	0			REV__nc|ENSG00000125388|P32298-3|GRK4	REV__nc|ENSG00000125388|P32298-3|GRK4	MULTI-MSMS	A375_MHC_IP_R1	1	429.27130126953125	3	428.871326	1283.59215	-0.050947	-2.185E-05	-0.27729	-0.00011892	-0.32824	-0.00014077	428.8714188712947	35.076	0.66172	35.076	34.81	35.472	0					30	12	3	0	0	0	0.72649	1	11596	11596		6.6235	1.5759	1	7620000	+		57776	18339	42113	42445	56397	56397					-0.03830353867124359
VEYEAVADLFE	11	Unmodified	_VEYEAVADLFE_					0	0	0			REV__nc|ENSG00000125388|P32298-3|GRK4	REV__nc|ENSG00000125388|P32298-3|GRK4	MULTI-MSMS	A375_MHC_IP_R2	2	429.27142333984375	3	428.871326	1283.59215	-0.45965	-0.00019713	-0.63505	-0.00027235	-1.0947	-0.00046949	428.87131297194884	34.533	0.71142	35.286	34.853	35.565	0.75225					37	13	4	0	0	0	0.69231	1	12360	12360		12.856	4.4116	1	8309400	+		57777	18339	42113	42445	56398	56398					-0.03830353867124359
VEYEAVADLFE	11	Unmodified	_VEYEAVADLFE_					0	0	0			REV__nc|ENSG00000125388|P32298-3|GRK4	REV__nc|ENSG00000125388|P32298-3|GRK4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	428.871326	1283.59215	-0.050947	-2.185E-05	-0.27729	-0.00011892	-0.32824	-0.00014077	428.8714188712947	35.076	0.66172	35.076	34.81	35.472	0	-0.10483	0.00022473	NaN	12.856	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7620000	+		57778	18339	42113	42445							-0.03830353867124359
VEYEAVADLFE	11	Unmodified	_VEYEAVADLFE_					0	0	0			REV__nc|ENSG00000125388|P32298-3|GRK4	REV__nc|ENSG00000125388|P32298-3|GRK4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	428.871326	1283.59215	-0.45965	-0.00019713	-0.63505	-0.00027235	-1.0947	-0.00046949	428.87131297194884	34.533	0.71142	35.286	34.853	35.565	0.75225	0.10483	-0.00023556	NaN	12.856	37	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8309400	+		57779	18339	42113	42445							-0.03830353867124359
VEYERELK	8	Unmodified	_VEYERELK_					0	0	0			REV__ENSG00000163633|ENST00000295898|C4orf36	REV__ENSG00000163633|ENST00000295898|C4orf36	MULTI-SECPEP	A375_MHC_IP_R1	1	532.7047729492188	2	533.282389	1064.55022	-0.75549	-0.00040289	-0.5003	-0.0002668	-1.2558	-0.00066969	533.2822070847233	68.505	0.55899	68.505	68.31	68.869	0					20	10	2	0	0	0	0.93661	1	24765	24765		10.824	0	1	4302700	+		57780	20389	42114	42446	56399	56399					0.02053135235018999
VEYERKKF	8	Unmodified	_VEYERKKF_					0	0	0		ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	MULTI-MSMS	A375_MHC_IP_R2	2	366.9010925292969	3	366.869591	1097.58694	-0.25004	-9.1731E-05	0.26339	9.6631E-05	0.013354	4.8991E-06	366.86973439978823	26.508	0.55853	27.168	26.907	27.466	0.65992					16	10	2	0	0	0	0.77515	1	9015	9015		9.3831	2.2814	1	3641800			57781	8004	42115	42447	56400	56400					0.04205431851596586
VEYFNIINTQ	10	Unmodified	_VEYFNIINTQ_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	A375_MHC_IP_R2	2	620.7409057617188	2	620.814053	1239.61355	-0.7731	-0.00047995	0.092146	5.7205E-05	-0.68096	-0.00042275	620.814101540294	66.983	0.65903	67.719	67.445	68.104	0.73631					24	12	3	0	0	0	0.93194	1	25293	25293		1.1933	0	1	6474700	+		57782	20029	42116	42448	56401	56401					0.0033307595228961873
VEYIQRPYLRK	11	Unmodified	_VEYIQRPYLRK_					0	0	0			REV__ENSG00000169288|ENST00000315567|MRPL1	REV__ENSG00000169288|ENST00000315567|MRPL1	MSMS	A375_MHC_IP_R1	1	732.9913330078125	2	732.919718	1463.82488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.812	1	87.812	87.312	88.312	0								0	0	0	0.16307	1	32228	32228		2.7352	0.23671	1		+		57783	20922	42117	42449	56402	56402					0.11152372714013836
VEYISRSS	8	Unmodified	_VEYISRSS_					0	0	0			REV__ENSG00000075539|ENST00000358350|FRYL	REV__ENSG00000075539|ENST00000358350|FRYL	MSMS	A375_MHC_IP_R1	1	470.62591552734375	2	470.740357	939.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.796	1	81.796	81.296	82.296	0								0	0	0	0.16876	1	29897	29897		5.2307	0.47466	1		+		57784	16658	42118	42450	56403	56403					-0.005993958618432771
VEYKPWQY	8	Unmodified	_VEYKPWQY_					0	0	0		ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	MSMS	A375_MHC_IP_R1	1	556.6980590820312	2	556.7742	1111.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.684	1	33.684	33.184	34.184	0								0	0	0	0.16876	1	11023	11023		10.183	0	1				57785	9059	42119	42451	56404	56404					-0.01745945931065762
VEYNALFKKY	10	Unmodified	_VEYNALFKKY_					0	0	0		ENST00000565642.5_1_16:71777395-71799448:-|nuORF;ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	425.9643859863281	3	425.564168	1273.67067	-0.05857	-2.4925E-05	0.35104	0.00014939	0.29247	0.00012446	425.5643090659034	55.803	0.45772	55.803	55.533	55.991	0					19	8	3	0	0	0	0.24749	1	19983	19983		44.392	30.174	1	3098800			57786	7107	42120	42452	56405	56405					0.04478543228651688
VEYNALFKKY	10	Unmodified	_VEYNALFKKY_					0	0	0		ENST00000565642.5_1_16:71777395-71799448:-|nuORF;ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	425.9638366699219	3	425.564168	1273.67067	-0.3121	-0.00013282	0.62625	0.00026651	0.31415	0.00013369	425.56428714855724	54.978	0.46027	55.729	55.523	55.984	0.75075					18	8	3	0	0	0	0.24749	1	20782	20782		44.392	25.671	1	3186700			57787	7107	42120	42452	56406	56406					0.04478543228651688
VEYNEKIW	8	Unmodified	_VEYNEKIW_					0	0	0			REV__nc|ENSG00000059769|Q9H1X3-2|DNAJC25	REV__nc|ENSG00000059769|Q9H1X3-2|DNAJC25	MULTI-MSMS	A375_MHC_IP_R1	1	541.6734008789062	2	540.771657	1079.52876	-0.10312	-5.5766E-05	-0.1678	-9.074E-05	-0.27092	-0.00014651	540.7716628555401	69.418	0.76245	69.418	68.969	69.732	0					35	14	4	0	0	0	0.76248	1	25190	25190		16.942	2.104	1	4517200	+		57788	16443	42121	42453	56407	56407					-0.007822497936786021
VEYQRSCYL	9	Unmodified	_VEYQRSCYL_					0	0	0		ENST00000534137.5_1_14:70518813-70527585:-|nuORF	ENST00000534137.5_1_14:70518813-70527585:-|nuORF	ENST00000534137.5_1_14:70518813-70527585:-|nuORF	MSMS	A375_MHC_IP_R1	1	580.8121948242188	2	580.773874	1159.53319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.61	1	92.61	92.11	93.11	0								0	0	0	0.15486	1	34036	34036		7.9102	0	1				57789	13208	42122	42454	56408	56408					-0.04019108642387437
VEYRGPLRL	9	Unmodified	_VEYRGPLRL_					0	0	0			REV__nc|ENSG00000008710|P98161-2|PKD1	REV__nc|ENSG00000008710|P98161-2|PKD1	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1503295898438	2	551.822015	1101.62948	-1.0474	-0.000578	-2.3928	-0.0013204	-3.4402	-0.0018984	552.3228232060352	41.096	0.45764	41.87	41.59	42.047	0.77451					10	8	2	0	0	0	0.77396	1	15286	15286		1.3295	0.13619	1	1329800	+		57790	16177	42123	42455	56409	56409					0.08272826979850834
VEYRYDEEQEH	11	Unmodified	_VEYRYDEEQEH_					0	0	0			REV__ENSG00000166233|ENST00000379887|ARIH1	REV__ENSG00000166233|ENST00000379887|ARIH1	MSMS	A375_MHC_IP_R1	1	499.4454345703125	3	499.547794	1495.62155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.979	1	32.979	32.479	33.479	0								0	0	0	0.16354	1	10709	10709		0.08335	0	1		+		57791	20662	42124	42456	56410	56410					-0.10643441588899805
VEYYRYIRFFP	11	Unmodified	_VEYYRYIRFFP_					0	0	0		nc|ENSG00000112146|Q9UK97-3|FBXO9;ENSG00000112146|ENST00000323557|FBXO9;nc|ENSG00000112146|Q9UK97|FBXO9	nc|ENSG00000112146|Q9UK97-3|FBXO9	nc|ENSG00000112146|Q9UK97-3|FBXO9	MSMS	A375_MHC_IP_R2	2	776.8983154296875	2	776.900994	1551.78744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.474	1	98.23	97.73	98.73	0.75586								0	0	0	0.16334	1	36996	36996		1.3295	0.13619	1				57792	3054	42125	42457	56411	56411					0.033612814483831244
VFAKLGTGNKW	11	Unmodified	_VFAKLGTGNKW_					0	0	0		ENST00000570023.1_1_15:42465909-42470478:-|nuORF	ENST00000570023.1_1_15:42465909-42470478:-|nuORF	ENST00000570023.1_1_15:42465909-42470478:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	407.3085021972656	3	407.564391	1219.67134	-0.10254	-4.1792E-05	-0.1085	-4.4221E-05	-0.21104	-8.6012E-05	407.8986537728912	68.87	0.2533	68.87	68.666	68.92	0					7	4	2	0	0	0	0.53535	1	24978	24978		22.109	0	1	1078800			57793	13598	42126	42458	56412	56412					0.07029382668360995
VFARTLPP	8	Unmodified	_VFARTLPP_					0	0	0			REV__ENST00000311417.6_1_3:178789742-178789865:-|nuORF	REV__ENST00000311417.6_1_3:178789742-178789865:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	451.16839599609375	2	450.76872	899.522887	-0.13889	-6.2606E-05	-0.015251	-6.8747E-06	-0.15414	-6.9481E-05	450.76844603881136	55.457	0.66356	55.457	55.126	55.79	0					18	12	2	0	0	0	0.69583	1	19839	19839		36.044	1.9418	1	2501700	+		57794	23507	42127	42459	56413	56413					0.06910696485329026
VFCEGCEQCEY	11	Unmodified	_VFCEGCEQCEY_					0	0	0			REV__PEG3|p.A979V|1|0.07|ENSG00000198300|chr19:56815506-56815506|G/A|missense_variant	REV__PEG3|p.A979V|1|0.07|ENSG00000198300|chr19:56815506-56815506|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	654.886474609375	2	655.230324	1308.4461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.66	1	100.66	100.16	101.16	0								0	0	0	0.16331	1	36997	36997		1.4819	0	1		+		57795	27763	42128	42460	56414	56414					-0.1957901897062584
VFDNIIMA	8	Unmodified	_VFDNIIMA_					0	0	0		tr|U7SGE1|U7SGE1_FUSNUFlavodoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02270PE=3SV=1	tr|U7SGE1|U7SGE1_FUSNUFlavodoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02270PE=3SV=1	tr|U7SGE1|U7SGE1_FUSNUFlavodoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02270PE=3SV=1	MSMS	A375_MHC_IP_R1	1	461.6392517089844	2	461.738771	921.462989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.342	1	70.342	69.842	70.842	0								0	0	0	0.16876	1	25539	25539		16.942	0	1				57796	29402	42129	42461	56415	56415					-0.0008836224021706585
VFEDESGKHW	10	Unmodified	_VFEDESGKHW_					0	0	0		ENSG00000125821|ENST00000377452|DTD1;ENST00000494921.1_1_20:18568716-18611186:+|nuORF	ENSG00000125821|ENST00000377452|DTD1	ENSG00000125821|ENST00000377452|DTD1	MULTI-SECPEP	A375_MHC_IP_R1	1	411.1556091308594	3	411.85601	1232.5462	0.11713	4.8241E-05	0.23942	9.8607E-05	0.35655	0.00014685	411.8559206966246	33.319	0.35711	33.319	33.19	33.547	0					10	6	2	0	0	0	0.9269	1	10879	10879		9.544	7.2612	1	862910			57797	3995	42130	42462	56416	56416					-0.0607695425867405
VFEDVLESFY	10	Unmodified	_VFEDVLESFY_					0	0	0		ENST00000497873.1_1_21:34107263-34123563:-|nuORF;PAXBP1|p.Y617Hfs*24|1|0.08|ENSG00000159086|chr21:32748572-32748573|TA/-|frameshift_variant;nc|ENSG00000159086|Q9Y5B6-2|PAXBP1;ENSG00000159086|ENST00000331923|PAXBP1	ENST00000497873.1_1_21:34107263-34123563:-|nuORF	ENST00000497873.1_1_21:34107263-34123563:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	623.7300415039062	2	624.295162	1246.57577	-0.48583	-0.0003033	2.5599	0.0015981	2.074	0.0012948	624.7986488026754	96.41	0.35808	96.41	96.171	96.529	0					10	6	2	0	0	0	0.85226	1	35403	35403		20.454	9.6297	1	957470			57798	6348	42131	42463	56417	56417					-0.03765435033187714
VFEDVLESFY	10	Unmodified	_VFEDVLESFY_					0	0	0		ENST00000497873.1_1_21:34107263-34123563:-|nuORF;PAXBP1|p.Y617Hfs*24|1|0.08|ENSG00000159086|chr21:32748572-32748573|TA/-|frameshift_variant;nc|ENSG00000159086|Q9Y5B6-2|PAXBP1;ENSG00000159086|ENST00000331923|PAXBP1	ENST00000497873.1_1_21:34107263-34123563:-|nuORF	ENST00000497873.1_1_21:34107263-34123563:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	623.7291870117188	2	624.295162	1246.57577	-0.64025	-0.00039971	3.4396	0.0021473	2.7993	0.0017476	624.7988200929417	95.646	0.40689	96.397	96.144	96.551	0.75045					13	7	3	0	0	0	0.78945	1	36362	36362		13.906	7.1829	1	929290			57799	6348	42131	42463	56418	56418					-0.03765435033187714
VFEEQKRLNEE	11	Unmodified	_VFEEQKRLNEE_					0	0	0			REV__ATAD3B|p.S162F|1|0.21|ENSG00000160072|chr1:1480907-1480907|C/T|missense_variant	REV__ATAD3B|p.S162F|1|0.21|ENSG00000160072|chr1:1480907-1480907|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	474.6398010253906	3	474.240412	1419.69941	-0.88355	-0.00041902	0.23247	0.00011025	-0.65108	-0.00030877	474.2405067720797	20.838	1.0659	21.448	21.16	22.225	0.61029					63	20	4	0	0	0	0.72713	1	6689	6689		11.631	0	1	30166000	+		57800	15471	42132	42464	56419	56419					0.00634616067168281
VFEYVGAPC	9	Unmodified	_VFEYVGAPC_					0	0	0			REV__ENSG00000171503|ENST00000511912|ETFDH	REV__ENSG00000171503|ENST00000511912|ETFDH	MSMS	A375_MHC_IP_R2	2	492.6425476074219	2	492.728403	983.442254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.283	1	88.016	87.516	88.516	0.733								0	0	0	0.15486	1	33193	33193		12.532	0	1		+		57801	21073	42133	42465	56420	56420					-0.050129526198816166
VFFILVVCI	9	Unmodified	_VFFILVVCI_					0	0	0			REV__ENSG00000176798|ENST00000641819|OR51L1	REV__ENSG00000176798|ENST00000641819|OR51L1	MULTI-SECPEP	A375_MHC_IP_R1	1	526.1477661132812	2	526.814282	1051.61401	-0.49111	-0.00025872	-0.23935	-0.00012609	-0.73046	-0.00038481	526.8140563300898	40.293	0.25473	40.293	40.1	40.355	0					6	4	2	0	0	0	0.79683	1	13761	13761		2.3027	0	1	1308100	+		57802	21418	42134	42466	56421	56421					0.09026824138459233
VFFLLIQL	8	Unmodified	_VFFLLIQL_					0	0	0			REV__OR5D16|p.P28L|1|0.49|ENSG00000205029|chr11:55838834-55838834|C/T|missense_variant	REV__OR5D16|p.P28L|1|0.49|ENSG00000205029|chr11:55838834-55838834|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	992.5316162109375	1	992.617916	991.61064	-0.023421	-2.3248E-05	1.3674	0.0013573	1.3439	0.001334	992.6195168282953	31.019	1.4154	31.019	29.999	31.414	0					33	27	2	0	0	0	0.77861	1	9960	9960		0	0	1	2621400	+		57803	27690	42135	42467	56422	56422					0.11449897356112615
VFFLLIQL	8	Unmodified	_VFFLLIQL_					0	0	0			REV__OR5D16|p.P28L|1|0.49|ENSG00000205029|chr11:55838834-55838834|C/T|missense_variant	REV__OR5D16|p.P28L|1|0.49|ENSG00000205029|chr11:55838834-55838834|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	992.028564453125	1	992.617916	991.61064	-0.023421	-2.3248E-05	1.3674	0.0013573	1.3439	0.001334	992.6195168282953	31.019	1.4154	31.019	29.999	31.414	0					33	27	2	0	0	0	0.972	1	9506	9506		0	0	1	2621400	+		57804	27690	42135	42467	56423	56423					0.11449897356112615
VFFRWTHGYV	10	Unmodified	_VFFRWTHGYV_					0	0	0			REV__ENST00000216039.9_1_22:39083023-39083575:-|nuORF	REV__ENST00000216039.9_1_22:39083023-39083575:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	438.1751708984375	3	437.892619	1310.65603	-0.079064	-3.4622E-05	0.36438	0.00015956	0.28532	0.00012494	437.89266130845795	54.633	0.66122	54.633	54.364	55.025	0					30	12	4	0	0	0	0.60608	1	19455	19455		13.519	6.8952	1	7373600	+		57805	23029	42136	42468	56424	56424					0.01312515871177311
VFFVFFIFTI	10	Unmodified	_VFFVFFIFTI_					0	0	0			REV__nc|ENSG00000078795|Q9NZM6-2|PKD2L2	REV__nc|ENSG00000078795|Q9NZM6-2|PKD2L2	MULTI-MSMS	A375_MHC_IP_R1	1	640.7584228515625	2	640.359911	1278.70527	-0.85043	-0.00054458	-0.92489	-0.00059226	-1.7753	-0.0011368	640.3594039383742	131.96	1.4688	131.96	131.48	132.95	0					74	28	3	0	0	0	0.71944	1	51019	51019		3.5965	0	1	19829000	+		57806	16718	42137	42469	56425	56425					0.07706411107415079
VFGNESRLVV	10	Unmodified	_VFGNESRLVV_					0	0	0			REV__ANK1|p.S1015F|1|0.34|ENSG00000029534|chr8:41695248-41695248|G/A|missense_variant	REV__ANK1|p.S1015F|1|0.34|ENSG00000029534|chr8:41695248-41695248|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	560.7112426757812	2	560.31148	1118.60841	-0.28303	-0.00015859	0.049719	2.7858E-05	-0.23332	-0.00013073	560.3115659559427	44.497	0.86921	44.497	43.757	44.626	0					29	16	2	0	0	0	0.83355	1	15362	15362		12.241	0	1	4917900	+		57807	15399	42138	42470	56426	56426					0.053848168803369845
VFGTCGSH	8	Unmodified	_VFGTCGSH_					0	0	0		nc|ENSG00000182477|P59922|OR2B8P	nc|ENSG00000182477|P59922|OR2B8P	nc|ENSG00000182477|P59922|OR2B8P	MSMS	A375_MHC_IP_R2	2	404.1421813964844	2	404.176338	806.338123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.234	1	66.972	66.472	67.472	0.73766								0	0	0	0.16876	1	25101	25101		6.3541	0	1				57808	14802	42139	42471	56427	56427					-0.0727923465673257
VFHPAREKV	9	Unmodified	_VFHPAREKV_					0	0	0		nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13;ENSG00000177054|ENST00000446113|ZDHHC13;ZDHHC13|p.R620C|2|0.27|ENSG00000177054|chr11:19175949-19175949|C/T|missense_variant;ENST00000525490.5_1_11:19191881-19197504:+|nuORF	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	MULTI-SECPEP	A375_MHC_IP_R1	1	361.25372314453125	3	361.541697	1081.60326	-0.012083	-4.3684E-06	-0.75157	-0.00027172	-0.76365	-0.00027609	361.5415393016413	46.876	0.45988	46.876	46.647	47.107	0					16	8	2	0	0	0	0.79837	1	16504	16504		1.1933	0	1	2680600			57809	8060	42140	42472	56428	56428					0.06572557808362944
VFHPRQEL	8	Unmodified	_VFHPRQEL_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	A375_MHC_IP_R1	1	513.6797485351562	2	513.279983	1024.54541	-0.66608	-0.00034189	0.021639	1.1107E-05	-0.64444	-0.00033078	513.2800051135031	28.113	0.40163	28.113	27.887	28.288	0					20	7	3	0	0	0	0.098723	1	8632	8632		120.45	65.677	1	13753000			57810	3768	42141	42473	56429	56429					0.03412295882935723
VFHPRQEL	8	Unmodified	_VFHPRQEL_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	A375_MHC_IP_R2	2	513.6796875	2	513.279983	1024.54541	-0.6792	-0.00034862	-0.20742	-0.00010647	-0.88662	-0.00045508	513.2798869524885	27.372	0.55932	28.051	27.792	28.351	0.67857					21	10	3	0	0	0	0.22517	1	9335	9335		69.105	23.084	1	12847000			57811	3768	42141	42473	56430	56430					0.03412295882935723
VFHTRFCSM	9	Unmodified	_VFHTRFCSM_					0	0	0		FMO2|p.R240C|2|0.36|ENSG00000094963|chr1:171203955-171203955|C/T|missense_variant	FMO2|p.R240C|2|0.36|ENSG00000094963|chr1:171203955-171203955|C/T|missense_variant	FMO2|p.R240C|2|0.36|ENSG00000094963|chr1:171203955-171203955|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	564.6585693359375	2	564.259879	1126.50521	-0.4074	-0.00022988	-1.2793	-0.00072185	-1.6867	-0.00095172	564.2589332350012	43.759	0.45685	43.759	43.502	43.959	0					12	8	2	0	0	0	0.71541	1	15277	15277		11.64	4.9171	1	1924400			57812	14008	42142	42474	56431	56431					-0.05298710103488702
VFHTRFCSM	9	Unmodified	_VFHTRFCSM_					0	0	0		FMO2|p.R240C|2|0.36|ENSG00000094963|chr1:171203955-171203955|C/T|missense_variant	FMO2|p.R240C|2|0.36|ENSG00000094963|chr1:171203955-171203955|C/T|missense_variant	FMO2|p.R240C|2|0.36|ENSG00000094963|chr1:171203955-171203955|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	564.259879	1126.50521	-0.41223	-0.0002326	-1.2129	-0.00068438	-1.6251	-0.00091698	564.2589616283868	42.957	0.50547	43.729	43.421	43.926	0.7724	-0.014875	4.788E-05	NaN	11.64	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2030300			57813	14008	42142	42474							-0.05298710103488702
VFHYRKWEF	9	Unmodified	_VFHYRKWEF_					0	0	0		chr6:133100184-133106095|249|28.47|0.81|5.13|+|2|LINC00326,LINC00326|1	chr6:133100184-133106095|249|28.47|0.81|5.13|+|2|LINC00326,LINC00326|1	chr6:133100184-133106095|249|28.47|0.81|5.13|+|2|LINC00326,LINC00326|1	MULTI-SECPEP	A375_MHC_IP_R1	1	438.2926940917969	3	437.892619	1310.65603	-0.079064	-3.4622E-05	0.36438	0.00015956	0.28532	0.00012494	437.89266130845795	54.633	0.66122	54.633	54.364	55.025	0					30	12	4	0	0	0	0.41731	1	19505	19505		29.437	18.538	1	7373600			57814	491	42143	42475	56432	56432					0.013125158711545737
VFHYRKWEF	9	Unmodified	_VFHYRKWEF_					0	0	0		chr6:133100184-133106095|249|28.47|0.81|5.13|+|2|LINC00326,LINC00326|1	chr6:133100184-133106095|249|28.47|0.81|5.13|+|2|LINC00326,LINC00326|1	chr6:133100184-133106095|249|28.47|0.81|5.13|+|2|LINC00326,LINC00326|1	MULTI-MSMS	A375_MHC_IP_R2	2	438.1750183105469	3	437.892619	1310.65603	-0.77351	-0.00033871	-0.29641	-0.00012979	-1.0699	-0.00046851	437.8925499409157	53.708	0.56496	54.459	54.147	54.712	0.75105					29	10	4	0	0	0	0.27064	1	20219	20219		24.882	2.1066	1	6546300			57815	491	42143	42475	56433	56433					0.013125158711545737
VFIAQTVLRN	10	Unmodified	_VFIAQTVLRN_					0	0	0		ENSG00000006638|ENST00000375190|TBXA2R;nc|ENSG00000006638|P21731-2|TBXA2R	ENSG00000006638|ENST00000375190|TBXA2R	ENSG00000006638|ENST00000375190|TBXA2R	MULTI-MSMS	A375_MHC_IP_R1	1	388.2584533691406	3	387.564391	1159.67134	-0.099872	-3.8707E-05	0.15829	6.1349E-05	0.058423	2.2643E-05	387.56452065147494	26.578	0.80615	26.578	26.221	27.027	0					45	14	4	0	0	0	0.31523	1	7874	7874		39.213	18.632	1	55667000			57816	923	42144	42476	56434	56434					0.09789382668373037
VFIERNQLY	9	Unmodified	_VFIERNQLY_					0	0	0			REV__tr|U7SQV1|U7SQV1_FUSNUPhosphoenolpyruvatecarboxykinase(ATP)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=pckAPE=3SV=1	REV__tr|U7SQV1|U7SQV1_FUSNUPhosphoenolpyruvatecarboxykinase(ATP)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=pckAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	591.1664428710938	2	591.319306	1180.62406	-0.82684	-0.00048893	-0.35289	-0.00020867	-1.1797	-0.0006976	591.3191706996953	61.951	0.60667	62.693	62.37	62.976	0.74263					19	11	3	0	0	0	0.63327	1	23443	23443		24.021	3.606	1	1537700	+		57817	28385	42145	42477	56435	56435					0.040971033973846716
VFIWLHKKI	9	Unmodified	_VFIWLHKKI_					0	0	0		tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1	tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1	tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	396.1444396972656	3	395.249855	1182.72774	-0.026693	-1.055E-05	0.082078	3.2441E-05	0.055385	2.1891E-05	395.24981788664206	74.665	0.60992	74.665	74.4	75.009	0					29	11	3	0	0	0	0.60623	1	27153	27153		9.3831	4.0862	1	6299100			57818	29434	42146	42478	56436	56436					0.14368055295699378
VFKGEKGV	8	Unmodified	_VFKGEKGV_					0	0	0			REV__tr|U7SVA9|U7SVA9_FUSNULargeribosomalsubunitassemblyfactorBipAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bipAPE=3SV=1	REV__tr|U7SVA9|U7SVA9_FUSNULargeribosomalsubunitassemblyfactorBipAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bipAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	431.6430358886719	2	432.252903	862.491253	-0.24939	-0.0001078	-0.30673	-0.00013258	-0.55611	-0.00024038	432.25273500397117	75.559	0.66444	76.3	75.976	76.64	0.74052					30	12	3	0	0	0	0.77651	1	28734	28734		26.884	3.7352	1	3465500	+		57819	28589	42147	42479	56437	56437					0.054507037313896944
VFKYKRGPD	9	Unmodified	_VFKYKRGPD_					0	0	0			REV__nc|ENSG00000168477|P22105-1|TNXB	REV__nc|ENSG00000168477|P22105-1|TNXB	MULTI-MSMS	A375_MHC_IP_R1	1	370.6083984375	3	370.541586	1108.60293	0.30872	0.00011439	3.2672	0.0012106	3.5759	0.001325	370.54263555498704	33.447	0.35711	33.447	33.19	33.547	0					9	6	2	0	0	0	0.75764	1	10946	10946		0.96228	0	1	1885900	+		57820	20858	42148	42480	56438	56438					0.05297138088508291
VFLAEQFEF	9	Unmodified	_VFLAEQFEF_					0	0	0		ENST00000441602.5_1_7:92883193-92979232:+|nuORF;nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000471188.5_1_7:92970131-92979232:+|nuORF	ENST00000441602.5_1_7:92883193-92979232:+|nuORF	ENST00000441602.5_1_7:92883193-92979232:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	565.6812744140625	2	565.281857	1128.54916	-0.49417	-0.00027934	0.0087431	4.9423E-06	-0.48542	-0.0002744	565.2817012650141	107.65	0.51029	108.4	108.15	108.66	0.75436					15	9	2	0	0	0	0.75466	1	40698	40698		12.532	1.4171	1	1672700			57821	869	42149	42481	56439	56439					-0.009970791338446361
VFLCCILSIT	10	Unmodified	_VFLCCILSIT_					0	0	0			REV__L1MC4a_dup640|chr1:236213889-236214231:+|1.163817221523315|0.3646074349697688|1.67|470.0|20|2|anti-sense	REV__L1MC4a_dup640|chr1:236213889-236214231:+|1.163817221523315|0.3646074349697688|1.67|470.0|20|2|anti-sense	MULTI-MSMS	A375_MHC_IP_R1	1	556.6155395507812	2	556.298139	1110.58172	-0.55471	-0.00030859	0.6958	0.00038707	0.14109	7.849E-05	556.2983890481077	60.286	0.81406	60.286	60.057	60.871	0					26	15	2	0	0	0	0.69695	1	21624	21624		10.824	0.75	1	3386000	+		57822	26885	42150	42482	56440	56440					0.030856686731340233
VFLENVIR	8	Unmodified	_VFLENVIR_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-SECPEP	A375_MHC_IP_R2	2	495.69232177734375	2	495.292559	988.570566	-0.47954	-0.00023751	-0.43536	-0.00021563	-0.9149	-0.00045314	495.29255632841347	77.381	0.86649	78.124	77.757	78.624	0.74293					34	16	3	0	0	0	0.28442	1	29378	29378		78.728	20.049	1	6639100			57823	6303	42151	42483	56441	56441					0.07582350685527217
VFLGKHTV	8	Unmodified	_VFLGKHTV_					0	0	0		OVGP1|p.S459F|2|0.34|ENSG00000085465|chr1:111415125-111415125|G/A|missense_variant	OVGP1|p.S459F|2|0.34|ENSG00000085465|chr1:111415125-111415125|G/A|missense_variant	OVGP1|p.S459F|2|0.34|ENSG00000085465|chr1:111415125-111415125|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	450.6810607910156	2	450.76872	899.522887	-0.13889	-6.2606E-05	-0.015251	-6.8747E-06	-0.15414	-6.9481E-05	450.76844603881136	55.457	0.66356	55.457	55.126	55.79	0					18	12	2	0	0	0	0.8824	1	19859	19859		30.225	4.8255	1	2501700			57824	15103	42152	42484	56442	56442					0.06910696485317658
VFLGKHTV	8	Unmodified	_VFLGKHTV_					0	0	0		OVGP1|p.S459F|2|0.34|ENSG00000085465|chr1:111415125-111415125|G/A|missense_variant	OVGP1|p.S459F|2|0.34|ENSG00000085465|chr1:111415125-111415125|G/A|missense_variant	OVGP1|p.S459F|2|0.34|ENSG00000085465|chr1:111415125-111415125|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	451.1684875488281	2	450.76872	899.522887	-0.4933	-0.00022236	0.2587	0.00011661	-0.2346	-0.00010575	450.7686542382621	54.574	0.55673	55.325	54.967	55.523	0.75075					17	10	2	0	0	0	0.70206	1	20574	20574		34.102	1.797	1	2122200			57825	15103	42152	42484	56443	56443					0.06910696485317658
VFLGPEDSSDP	11	Unmodified	_VFLGPEDSSDP_					0	0	0		nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7	nc|ENSG00000064687|Q8IZY2-2|ABCA7	nc|ENSG00000064687|Q8IZY2-2|ABCA7	MULTI-MSMS	A375_MHC_IP_R2	2	582.1654052734375	2	581.766768	1161.51898	-0.61964	-0.00036049	-1.0613	-0.00061745	-1.681	-0.00097794	581.7658676910828	57.972	0.65674	58.721	58.323	58.98	0.74894					23	12	3	0	0	0	0.65228	1	21925	21925		19.257	4.4187	1	2282800			57826	1357	42153	42485	56444	56444					-0.05531482589708503
VFLGPEDSSDP	11	Unmodified	_VFLGPEDSSDP_					0	0	0		nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7	nc|ENSG00000064687|Q8IZY2-2|ABCA7	nc|ENSG00000064687|Q8IZY2-2|ABCA7	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	581.766768	1161.51898	-0.29613	-0.00017228	-0.5712	-0.0003323	-0.86733	-0.00050458	581.7663492283216	58.664	0.7638	58.664	58.278	59.041	0	-0.028625	0.00018907	NaN	19.257	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2055800			57827	1357	42153	42485							-0.05531482589708503
VFLINSLEMTC	11	Unmodified	_VFLINSLEMTC_					0	0	0			REV__CD86|p.G8E|1|0.4|ENSG00000114013|chr3:122091609-122091609|G/A|missense_variant	REV__CD86|p.G8E|1|0.4|ENSG00000114013|chr3:122091609-122091609|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	635.7142333984375	2	635.314517	1268.61448	-0.79476	-0.00050492	0.25365	0.00016115	-0.54111	-0.00034377	635.3147016665962	90.107	0.45491	90.107	89.83	90.285	0					15	8	2	0	0	0	0.98748	1	33122	33122		13.042	1.5478	1	1878000	+		57828	15617	42154	42486	56445	56445					-0.009081689946697225
VFLIVPCLP	9	Unmodified	_VFLIVPCLP_					0	0	0			REV__AluSz6_dup39072|chr16:57641566-57641864:-|1.95310937468986|0.0826347028473857|4.56|470.0|15|1|anti-sense	REV__AluSz6_dup39072|chr16:57641566-57641864:-|1.95310937468986|0.0826347028473857|4.56|470.0|15|1|anti-sense	MULTI-SECPEP	A375_MHC_IP_R2	2	501.1983947753906	2	500.798632	999.582711	-0.91763	-0.00045955	-0.05762	-2.8856E-05	-0.97525	-0.0004884	500.7985940541398	23.122	0.25491	23.752	23.623	23.878	0.63014					7	4	2	0	0	0	0.77244	1	7434	7434		9.3474	0	1	2866200	+		57829	15383	42155	42487	56446	56446					0.08290251104347135
VFLSKVLEPTL	11	Unmodified	_VFLSKVLEPTL_					0	0	0		nc|ENSG00000145321|P02774-2|GC;ENSG00000145321|ENST00000273951|GC;nc|ENSG00000145321|P02774-3|GC	nc|ENSG00000145321|P02774-2|GC	nc|ENSG00000145321|P02774-2|GC	MULTI-SECPEP	A375_MHC_IP_R1	1	416.5888671875	3	415.919952	1244.73803	0.34705	0.00014435	-2.5592	-0.0010644	-2.2122	-0.0009201	415.9189093967376	35.015	0.3573	35.015	34.861	35.218	0					8	6	2	0	0	0	0.99607	1	11595	11595		8.2864	4.1698	1	2130200		+	57830	5551	42156	42488	56447	56447					0.12544573439595297
VFLSRSFSK	9	Unmodified	_VFLSRSFSK_					0	0	0			REV__ZNF189|p.S189L|1|0.69|ENSG00000136870|chr9:101408334-101408334|C/T|missense_variant	REV__ZNF189|p.S189L|1|0.69|ENSG00000136870|chr9:101408334-101408334|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	357.91705322265625	3	357.537953	1069.59203	0.2621	9.371E-05	-0.99842	-0.00035697	-0.73632	-0.00026326	357.53769481332375	35.78	0.40905	35.78	35.573	35.982	0					18	7	3	0	0	0	0.54799	1	11885	11885		17.443	0	1	3506100	+		57831	29027	42157	42489	56448	56448					0.06001735714221468
VFLTRTNII	9	Unmodified	_VFLTRTNII_					0	0	0		nc|ENSG00000114904|P51957-3|NEK4;nc|ENSG00000114904|P51957-2|NEK4;ENSG00000114904|ENST00000233027|NEK4	nc|ENSG00000114904|P51957-3|NEK4	nc|ENSG00000114904|P51957-3|NEK4	MULTI-SECPEP	A375_MHC_IP_R1	1	539.1284790039062	2	538.826766	1075.63898	-0.78377	-0.00042232	-0.070842	-3.8171E-05	-0.85461	-0.00046049	538.8267077650265	53.142	0.45671	53.142	52.997	53.453	0					13	8	2	0	0	0	0.61452	1	18934	18934		10.8	0	1	2158600			57832	3256	42158	42490	56449	56449					0.1041859526535518
VFMKLIIF	8	Unmodified	_VFMKLIIF_					0	0	0		ENSG00000279000|ENST00000641238|OR10A6	ENSG00000279000|ENST00000641238|OR10A6	ENSG00000279000|ENST00000641238|OR10A6	MSMS	A375_MHC_IP_R2	2	505.6986999511719	2	505.808999	1009.60345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.45	1	145.47	144.97	145.97	0.021408								0	0	0	0.16876	1	56779	56779		0.79363	0.10326	1				57833	10041	42159	42491	56450	56450					0.09902841484017699
VFMPKKLN	8	Unmodified	_VFMPKKLN_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MSMS	A375_MHC_IP_R2	2	488.6844482421875	2	488.786056	975.557558	-0.92576	-0.0004525	0.23916	0.0001169	-0.6866	-0.0003356	488.7861898355561	58.767	0.55933	59.514	59.286	59.845	0.74714					19	10	2	0	0	0	0.77603	1	22202	22202		9.3474	0	1	6860300			57834	8698	42160	42492	56451	56451					0.06880196301779051
VFNQFFWESFL	11	Unmodified	_VFNQFFWESFL_					0	0	0			REV__nc|ENSG00000140993|Q6NT04-2|TIGD7	REV__nc|ENSG00000140993|Q6NT04-2|TIGD7	MSMS	A375_MHC_IP_R2	2	488.4692077636719	3	488.571322	1462.69214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.122	1	56.873	56.373	57.373	0.75015								0	0	0	0.16332	1	21209	21209		1.4551	0.24029	1		+		57835	19239	42161	42493	56452	56452					-0.02070071742627988
VFPEKGYSF	9	Unmodified	_VFPEKGYSF_					0	0	0		ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	537.135009765625	2	537.26875	1072.52295	-0.67499	-0.00036265	0.67802	0.00036428	0.0030358	1.631E-06	537.2691209881065	63.742	1.0187	63.742	63.173	64.191	0					24	19	2	0	0	0	0.63327	1	23007	23007		18.146	2.2992	1	1292100			57836	5935	42162	42494	56453	56453					-0.010413483053298478
VFPIKEMW	8	Unmodified	_VFPIKEMW_					0	0	0			REV__ENSG00000121898|ENST00000241305|CPXM2	REV__ENSG00000121898|ENST00000241305|CPXM2	MULTI-MSMS	A375_MHC_IP_R1	1	525.6780395507812	2	525.278063	1048.54157	-0.27764	-0.00014584	-0.062957	-3.307E-05	-0.34059	-0.00017891	525.2782890640756	111.64	0.30585	111.64	111.46	111.77	0					7	5	2	0	0	0	0.76683	1	40948	40948		15.768	15.768	1	2953400	+		57837	18176	42163	42495	56454	56454					0.019244900648573093
VFPLSKRVLV	10	Unmodified	_VFPLSKRVLV_					0	0	0			REV__ENST00000574109.5_1_16:15793693-15793747:+|nuORF	REV__ENST00000574109.5_1_16:15793693-15793747:+|nuORF	MSMS	A375_MHC_IP_R1	1	579.7491455078125	2	579.373884	1156.73321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.62	1	143.62	143.12	144.12	0								0	0	0	0.1552	1	55095	55095		3.9444	0	1		+		57838	26297	42164	42496	56455	56455					0.16111734087485274
VFPMPLPRK	9	Unmodified	_VFPMPLPRK_					0	0	0		ENSG00000121152|ENST00000240423|NCAPH;ENST00000477409.1_1_2:97001567-97024936:+|nuORF	ENSG00000121152|ENST00000240423|NCAPH	ENSG00000121152|ENST00000240423|NCAPH	MSMS	A375_MHC_IP_R1	1	362.6173400878906	3	362.216045	1083.62631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.926	1	64.926	64.426	65.426	0								0	0	0	0.15486	1	23500	23500		1.1933	0.12188	1				57839	3709	42165	42497	56456	56456					0.08783860601488414
VFPPSVTT	8	Unmodified	_VFPPSVTT_					0	0	0		ENST00000530724.1_1_11:6471537-6472266:-|nuORF	ENST00000530724.1_1_11:6471537-6472266:-|nuORF	ENST00000530724.1_1_11:6471537-6472266:-|nuORF	MSMS	A375_MHC_IP_R1	1	424.1587219238281	2	424.231636	846.448719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.16	1	140.16	139.66	140.66	0								0	0	0	0.16876	1	53846	53846		5.7604	0	1				57840	13154	42166	42498	56457	56457					0.01935308603140129
VFPSLMIII	9	Unmodified	_VFPSLMIII_					0	0	0			REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	517.2116088867188	2	516.811739	1031.60893	-0.59064	-0.00030525	0.16074	8.3074E-05	-0.4299	-0.00022218	516.8117509898259	136.67	0.36371	136.79	136.6	136.97	0.11134					10	6	2	0	0	0	0.77244	1	53704	53704		5.2307	0	1	1400500	+		57841	28733	42167	42499	56458	56458					0.09438520275830342
VFQENVKVKW	10	Unmodified	_VFQENVKVKW_					0	0	0		HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant;ENSG00000128731|ENST00000261609|HERC2;HERC2|p.I993Lfs*32|1|0.27|ENSG00000128731|chr15:28254414-28254414|A/-|frameshift_variant;ENST00000564383.1_1_15:28525212-28544620:-|nuORF	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	426.6397399902344	3	426.239796	1275.69756	-0.14577	-6.2134E-05	-0.17919	-7.6379E-05	-0.32497	-0.00013851	426.2397474529028	48.378	0.55399	49.136	48.829	49.383	0.75737					21	10	3	0	0	0	0.7086	1	18165	18165		8.4443	0	1	3158800			57842	14109	42168	42500	56459	56459					0.07073651839846207
VFQIGEAEPT	10	Unmodified	_VFQIGEAEPT_					0	0	0			REV__ENSG00000169933|ENST00000675598|FRMPD4	REV__ENSG00000169933|ENST00000675598|FRMPD4	MULTI-SECPEP	A375_MHC_IP_R1	1	546.223876953125	2	545.774396	1089.53424	-0.40909	-0.00022327	0.43574	0.00023781	0.026648	1.4544E-05	545.7744510824854	105.67	1.3247	105.67	105.3	106.62	0					41	25	2	0	0	0	0.91556	1	39023	39023		14.838	5.4551	1	2981400	+		57843	20954	42169	42501	56460	56460					-0.006945710018726459
VFQPILCPE	9	Unmodified	_VFQPILCPE_					0	0	0		ENSG00000163898|ENST00000296252|LIPH	ENSG00000163898|ENST00000296252|LIPH	ENSG00000163898|ENST00000296252|LIPH	MSMS	A375_MHC_IP_R1	1	523.1712036132812	2	523.272978	1044.5314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.94	1	129.94	129.44	130.44	0								0	0	0	0.15486	1	49989	49989		7.9102	0	1				57844	6740	42170	42502	56461	56461					0.01091882339642325
VFQSCRRRM	9	Unmodified	_VFQSCRRRM_					0	0	0			REV__ENSG00000184140|ENST00000328882|OR4F6	REV__ENSG00000184140|ENST00000328882|OR4F6	MULTI-MSMS	A375_MHC_IP_R2	2	592.7240600585938	2	591.802777	1181.591	-0.35965	-0.00021284	-0.83577	-0.00049461	-1.1954	-0.00070745	591.802353209606	114.12	0.70473	114.83	114.48	115.19	0.70985					34	13	3	0	0	0	0.55818	1	43064	43064		16.942	3.0362	1	12959000	+		57845	21797	42171	42503	56462	56462					0.00746874802007369
VFQSVKSLL	9	Unmodified	_VFQSVKSLL_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.M1167Ffs*18|1|0.44|ENSG00000023516|chr13:42302242-42302251|CTCATGCGAT/-|frameshift_variant;AKAP11|p.E913Rfs*39|1|0.3|ENSG00000023516|chr13:42301482-42301482|G/-|frameshift_variant	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	MULTI-SECPEP	A375_MHC_IP_R2	2	510.1874694824219	2	510.808042	1019.60153	-0.78414	-0.00040054	-0.8734	-0.00044614	-1.6575	-0.00084668	510.8081526976662	72.93	0.6109	73.665	73.379	73.99	0.7354					19	11	3	0	0	0	0.46045	1	27690	27690		29.082	0	1	1565100			57846	1078	42172	42504	56463	56463					0.09251503999769284
VFQYRLVEY	9	Unmodified	_VFQYRLVEY_					0	0	0		ENSG00000163877|ENST00000296215|SNIP1	ENSG00000163877|ENST00000296215|SNIP1	ENSG00000163877|ENST00000296215|SNIP1	MULTI-SECPEP	A375_MHC_IP_R1	1	609.221435546875	2	608.821681	1215.62881	-0.372	-0.00022648	-0.090508	-5.5103E-05	-0.46251	-0.00028158	608.8215857249418	81.26	0.91203	81.26	80.897	81.809	0					43	17	4	0	0	0	0.010788	1	29644	29644		155.03	115.08	1	21526000			57847	6738	42173	42505	56464	56464					0.029619875401522222
VFQYRLVEY	9	Unmodified	_VFQYRLVEY_					0	0	0		ENSG00000163877|ENST00000296215|SNIP1	ENSG00000163877|ENST00000296215|SNIP1	ENSG00000163877|ENST00000296215|SNIP1	MULTI-MATCH	A375_MHC_IP_R2	2		2	608.821681	1215.62881	-0.4803	-0.00029241	-0.039556	-2.4083E-05	-0.51985	-0.0003165	608.8215785330033	80.467	0.91476	81.211	80.81	81.724	0.74473	-0.024367	2.8545E-05	NaN	155.03	49	17	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19306000			57848	6738	42173	42505							0.029619875401522222
VFRQISLSQE	10	Unmodified	_VFRQISLSQE_					0	0	0			REV__ENSG00000144395|ENST00000389175|CCDC150	REV__ENSG00000144395|ENST00000389175|CCDC150	MULTI-MSMS	A375_MHC_IP_R2	2	402.9213562011719	3	402.887422	1205.64044	-0.084421	-3.4012E-05	-0.15523	-6.2539E-05	-0.23965	-9.6552E-05	402.88734397501577	39.316	0.8642	40.09	39.812	40.676	0.77451					52	16	6	0	0	0	0.71946	1	14719	14719		3.5871	0.6607	1	83326000	+		57849	19421	42174	42506	56465	56465					0.04584184563486815
VFRRKRERNRR	11	Unmodified	_VFRRKRERNRR_					0	0	0		ENST00000453426.1_1_6:32811873-32813517:+|nuORF	ENST00000453426.1_1_6:32811873-32813517:+|nuORF	ENST00000453426.1_1_6:32811873-32813517:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	787.6250610351562	2	786.974548	1571.93454	-0.79916	-0.00062892	0.5037	0.0003964	-0.29546	-0.00023252	787.4761633603163	142.47	0.20474	142.51	142.43	142.64	0.030731					5	3	2	0	0	0	0.73934	1	55720	55720		0	0	1	2837800			57850	12097	42175	42507	56466	56466					0.17145235896578015
VFRVAAEFSS	10	Unmodified	_VFRVAAEFSS_					0	0	0		VPS52|p.L548F|1|0.29|ENSG00000223501|chr6:33263858-33263858|G/A|missense_variant	VPS52|p.L548F|1|0.29|ENSG00000223501|chr6:33263858-33263858|G/A|missense_variant	VPS52|p.L548F|1|0.29|ENSG00000223501|chr6:33263858-33263858|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	372.273193359375	3	371.529346	1111.56621	0.25199	9.3621E-05	-0.30874	-0.00011471	-0.05675	-2.1084E-05	371.52927835294184	35.722	0.60935	36.486	36.233	36.842	0.76338					14	11	2	0	0	0	0.9269	1	13119	13119		3.5871	0.85186	1	782010			57851	30150	42176	42508	56467	56467					0.014888414719507637
VFSGTLALGA	10	Unmodified	_VFSGTLALGA_					0	0	0			REV__ENST00000476764.2_1_3:197281386-197281515:-|nuORF	REV__ENST00000476764.2_1_3:197281386-197281515:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	468.6632995605469	2	468.263468	934.512382	-0.45813	-0.00021453	-0.0074778	-3.5016E-06	-0.46561	-0.00021803	468.2636132044906	110.54	2.2466	111.27	110.89	113.13	0.73692					65	43	3	0	0	0	0.32951	1	41642	41642		37.974	0	1	9623700	+		57852	25188	42177	42509	56468	56468					0.04250669040231969
VFSNLRQL	8	Unmodified	_VFSNLRQL_					0	0	0		nc|ENSG00000172061|Q8TF66-2|LRRC15;ENSG00000172061|ENST00000347624|LRRC15	nc|ENSG00000172061|Q8TF66-2|LRRC15	nc|ENSG00000172061|Q8TF66-2|LRRC15	MULTI-MSMS	A375_MHC_IP_R1	1	489.1474304199219	2	488.782359	975.550165	-0.38525	-0.0001883	-0.12077	-5.9032E-05	-0.50603	-0.00024734	488.7822685337096	28.181	2.1242	28.181	27.482	29.607	0					150	41	4	0	0	0	0.75322	1	9207	9207		19.439	3.2899	1	162730000			57853	7677	42178	42510	56469	56469					0.06141180025713311
VFSTAAFRF	9	Unmodified	_VFSTAAFRF_					0	0	0		nc|ENSG00000115705|P07202-5|TPO;nc|ENSG00000115705|P07202-8|TPO;nc|ENSG00000115705|P07202-7|TPO;nc|ENSG00000115705|P07202-2|TPO;nc|ENSG00000115705|P07202-4|TPO;nc|ENSG00000115705|P07202-3|TPO;ENSG00000115705|ENST00000329066|TPO;nc|ENSG00000115705|P07202-6|TPO	nc|ENSG00000115705|P07202-5|TPO	nc|ENSG00000115705|P07202-5|TPO	MSMS	A375_MHC_IP_R1	1	523.6744995117188	2	523.276909	1044.53927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.76	1	114.76	114.26	115.26	0								0	0	0	0.15486	1	42084	42084		12.532	1.7076	1				57854	3332	42179	42511	56470	56470					0.01877777651429824
VFTHLSSL	8	Unmodified	_VFTHLSSL_					0	0	0		ENSG00000171970|ENST00000306908|ZNF57	ENSG00000171970|ENST00000306908|ZNF57	ENSG00000171970|ENST00000306908|ZNF57	MULTI-MSMS	A375_MHC_IP_R1	1	452.6501159667969	2	452.25036	902.486168	-0.49807	-0.00022525	0.42228	0.00019098	-0.075789	-3.4276E-05	452.25047374390886	67.311	2.54	67.311	66.938	69.478	0					110	49	3	0	0	0	0.13073	1	24324	24324		89.427	6.4873	1	32264000			57855	7667	42180	42512	56471	56471					0.031023998687601306
VFVHFARSL	9	Unmodified	_VFVHFARSL_					0	0	0			REV__ENST00000283410.4_1_18:33059207-33077880:-|nuORF	REV__ENST00000283410.4_1_18:33059207-33077880:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	359.9408874511719	3	359.206426	1074.59745	-0.2795	-0.0001004	-0.065543	-2.3543E-05	-0.34504	-0.00012394	359.2063243358859	55.543	0.60751	56.294	55.984	56.591	0.75075					30	11	4	0	0	0	0.2264	1	20947	20947		32.786	2.9451	1	7959100	+		57856	23329	42181	42513	56472	56472					0.06313459296711699
VFVHFARSL	9	Unmodified	_VFVHFARSL_					0	0	0			REV__ENST00000283410.4_1_18:33059207-33077880:-|nuORF	REV__ENST00000283410.4_1_18:33059207-33077880:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	359.206426	1074.59745	-0.2795	-0.0001004	-0.065543	-2.3543E-05	-0.34504	-0.00012394	359.2063243358859	55.543	0.60751	56.294	55.984	56.591	0.75075	-0.12669	0.00011734	NaN	32.786	30	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7959100	+		57857	23329	42181	42513							0.06313459296711699
VFVKTRITA	9	Unmodified	_VFVKTRITA_					0	0	0			REV__HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	REV__HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	518.221435546875	2	517.821484	1033.62842	-0.40734	-0.00021093	0.12791	6.6234E-05	-0.27943	-0.00014469	517.8214659668397	39.291	0.50794	39.291	39.033	39.541	0					17	9	3	0	0	0	0.59098	1	13421	13421		21.537	3.3906	1	5267700	+		57858	18467	42182	42514	56473	56473					0.1129461261095912
VFVKTRITA	9	Unmodified	_VFVKTRITA_					0	0	0			REV__HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	REV__HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	518.22119140625	2	517.821484	1033.62842	-1.0678	-0.00055291	0.42726	0.00022125	-0.6405	-0.00033166	517.821657701586	38.271	0.4072	39.045	38.843	39.25	0.77451					15	7	3	0	0	0	0.56537	1	14089	14089		17.113	0	1	4416200	+		57859	18467	42182	42514	56474	56474					0.1129461261095912
VFVLKKLIKKI	11	Unmodified	_VFVLKKLIKKI_					0	0	0			REV__tr|U7T8C2|U7T8C2_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00004PE=4SV=1	REV__tr|U7T8C2|U7T8C2_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00004PE=4SV=1	MSMS	A375_MHC_IP_R2	2	664.9741821289062	2	664.973234	1327.93191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.11234	1	0.58278	0.082781	1.0828	0.47044								0	0	0	0.1636	1	40	40		0	0	1		+		57860	28885	42183	42515	56475	56475					0.28106574666344386
VFVPFTKPW	9	Unmodified	_VFVPFTKPW_					0	0	0		nc|ENSG00000180347|Q6ZRS4-3|ITPRID1;ENSG00000180347|ENST00000615280|ITPRID1;nc|ENSG00000180347|Q6ZRS4-4|ITPRID1	nc|ENSG00000180347|Q6ZRS4-3|ITPRID1	nc|ENSG00000180347|Q6ZRS4-3|ITPRID1	MULTI-SECPEP	A375_MHC_IP_R2	2	560.6199340820312	2	560.813128	1119.6117	-0.47251	-0.00026499	-0.83001	-0.00046548	-1.3025	-0.00073047	560.8126203757806	43.319	0.85922	44.092	43.775	44.634	0.7724					17	16	2	0	0	0	0.75466	1	16143	16143		4.3292	4.3292	1	1824700			57861	8290	42184	42516	56476	56476					0.056681117249809176
VFWDGAWTW	9	Unmodified	_VFWDGAWTW_					0	0	0			REV__nc|ENSG00000135636|O75923-3|DYSF	REV__nc|ENSG00000135636|O75923-3|DYSF	MSMS	A375_MHC_IP_R1	1	583.9595336914062	2	584.266542	1166.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.03	1	100.03	99.534	100.53	0								0	0	0	0.15486	1	36758	36758		7.9102	0	1		+		57862	18871	42185	42517	56477	56477					-0.058068127282467685
VFWLRFSNRAF	11	Unmodified	_VFWLRFSNRAF_					0	0	0		ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	MULTI-SECPEP	A375_MHC_IP_R1	1	480.8936462402344	3	481.594573	1441.76189	-0.32129	-0.00015473	2.1978	0.0010585	1.8765	0.00090373	481.596560756193	33.834	0.70931	33.834	33.393	34.103	0					25	13	3	0	0	0	0.99411	1	11034	11034		9.7643	5.3581	1	3524400			57863	2156	42186	42518	56478	56478					0.058678517166526944
VFWRYPPRRKE	11	Unmodified	_VFWRYPPRRKE_					0	0	0			REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6	REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6	MSMS	A375_MHC_IP_R2	2	767.6461181640625	2	767.425502	1532.83645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.424	1	95.169	94.669	95.669	0.74474								0	0	0	0.16337	1	35884	35884		1.1933	0.12188	1		+		57864	16575	42187	42519	56479	56479					0.09134614528011298
VFWRYPPRRKE	11	Unmodified	_VFWRYPPRRKE_					0	0	0			REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6	REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6	MSMS	A375_MHC_IP_R2	2	767.8265380859375	2	767.425502	1532.83645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.501	1	95.246	94.746	95.746	0.74474								0	0	0	0.16331	1	35912	35912		1.4819	0.28856	1		+		57865	16575	42187	42519	56480	56480					0.09134614528011298
VFYDMWIKQVI	11	Unmodified	_VFYDMWIKQVI_					0	0	0			REV__ZFC3H1|p.L1789F|1|0.34|ENSG00000133858|chr12:71614696-71614696|G/A|missense_variant	REV__ZFC3H1|p.L1789F|1|0.34|ENSG00000133858|chr12:71614696-71614696|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	721.7802124023438	2	721.381048	1440.74754	-0.9681	-0.00069837	-0.7572	-0.00054623	-1.7253	-0.0012446	721.3804467929307	67.905	0.65668	67.905	67.603	68.26	0					40	12	4	0	0	0	0.72649	1	24580	24580		12.241	12.241	1	15244000	+		57866	29017	42188	42520	56481	56481					0.04480018453455159
VGAAANILV	9	Unmodified	_VGAAANILV_					0	0	0			REV__nc|ENSG00000112499|O15244-3|SLC22A2	REV__nc|ENSG00000112499|O15244-3|SLC22A2	MSMS	A375_MHC_IP_R1	1	414.26812744140625	2	414.252903	826.491253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.724	1	28.724	28.224	29.224	0								0	0	0	0.15486	1	8901	8901		12.532	4.6214	1		+		57867	17735	42189	42521	56482	56482					0.07106703731369635
VGAAANILV	9	Unmodified	_VGAAANILV_					0	0	0			REV__nc|ENSG00000112499|O15244-3|SLC22A2	REV__nc|ENSG00000112499|O15244-3|SLC22A2	MULTI-MSMS	A375_MHC_IP_R2	2	414.26812744140625	2	414.252903	826.491253	-0.038457	-1.5931E-05	-0.17196	-7.1235E-05	-0.21042	-8.7165E-05	414.2526598862923	27.86	0.2542	28.539	28.452	28.706	0.67857					6	4	2	0	0	0	0.63811	1	9633	9633		12.532	4.6214	1	1038000	+		57868	17735	42189	42521	56483	56483					0.07106703731369635
VGAADQRAGAL	11	Unmodified	_VGAADQRAGAL_					0	0	0			REV__ENST00000574053.1_2_17:81052130-81052301:+|nuORF	REV__ENST00000574053.1_2_17:81052130-81052301:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	515.17724609375	2	514.777805	1027.54106	-0.85006	-0.00043759	0.032631	1.6798E-05	-0.81743	-0.0004208	514.7777469311914	30.241	0.70686	30.241	30.099	30.806	0					23	13	2	0	0	0	0.18122	1	9590	9590		56.177	4.5472	1	9662700	+		57869	23559	42190	42522	56484	56484					0.028387866693719843
VGAADQRAGAL	11	Unmodified	_VGAADQRAGAL_					0	0	0			REV__ENST00000574053.1_2_17:81052130-81052301:+|nuORF	REV__ENST00000574053.1_2_17:81052130-81052301:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	515.1771850585938	2	514.777805	1027.54106	-1.367	-0.00070372	0.51616	0.00026571	-0.85087	-0.00043801	514.778011390455	29.517	0.70704	30.215	30.032	30.739	0.69872					28	13	3	0	0	0	0.28117	1	10320	10320		56.177	10.477	1	8259300	+		57870	23559	42190	42522	56485	56485					0.028387866693719843
VGAADQRAGAL	11	Unmodified	_VGAADQRAGAL_					0	0	0			REV__ENST00000574053.1_2_17:81052130-81052301:+|nuORF	REV__ENST00000574053.1_2_17:81052130-81052301:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	514.777805	1027.54106	-0.85006	-0.00043759	0.032631	1.6798E-05	-0.81743	-0.0004208	514.7777469311914	30.241	0.70686	30.241	30.099	30.806	0	0.012953	-0.00024638	NaN	56.177	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9662700	+		57871	23559	42190	42522							0.028387866693719843
VGAAGVPV	8	Unmodified	_VGAAGVPV_					0	0	0			REV__nc|ENSG00000148584|Q9NQ94-5|A1CF	REV__nc|ENSG00000148584|Q9NQ94-5|A1CF	MULTI-SECPEP	A375_MHC_IP_R1	1	669.7919311523438	1	669.393002	668.385725	-0.45898	-0.00030724	-0.073596	-4.9265E-05	-0.53258	-0.0003565	669.3928297936237	110.72	0.45993	110.72	110.49	110.95	0					12	8	2	0	0	0	0.90851	1	40602	40602		17.087	0	1	1840700	+		57872	27283	42191	42523	56486	56486					0.03826787605748905
VGAAKILANIK	11	Unmodified	_VGAAKILANIK_					0	0	0			REV__ENST00000423096.1_1_19:54278912-54278978:+|nuORF	REV__ENST00000423096.1_1_19:54278912-54278978:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6602783203125	2	549.355691	1096.69683	-0.79731	-0.00043801	-0.13652	-7.4996E-05	-0.93383	-0.000513	549.355579297477	32.146	0.40652	32.882	32.654	33.061	0.73692					12	7	2	0	0	0	0.99676	1	11341	11341		2.9952	1.151	1	3743600	+		57873	19038	42192	42524	56487	56487					0.15234857190785078
VGAARSRL	8	Unmodified	_VGAARSRL_					0	0	0		ENST00000383779.8_1_3:15614715-15637929:-|nuORF	ENST00000383779.8_1_3:15614715-15637929:-|nuORF	ENST00000383779.8_1_3:15614715-15637929:-|nuORF	MSMS	A375_MHC_IP_R1	1	415.6537780761719	2	415.253769	828.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.206	1	99.206	98.706	99.706	0								0	0	0	0.16876	1	36444	36444		6.3541	0.59368	1				57874	11392	42193	42525	56488	56488					0.07187757539986706
VGAASPRL	8	Unmodified	_VGAASPRL_					0	0	0			REV__ENST00000593069.1_2_19:56160288-56160417:+|nuORF	REV__ENST00000593069.1_2_19:56160288-56160417:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	385.6504211425781	2	385.729595	769.444637	0.72773	0.00028071	-0.36845	-0.00014212	0.35928	0.00013858	385.72937574497394	49.209	0.60815	49.209	48.983	49.591	0					28	11	3	0	0	0	0.77603	1	17540	17540		9.3474	0.75416	1	7663900	+		57875	26456	42194	42526	56489	56489					0.05069263900099941
VGAAWVPV	8	Unmodified	_VGAAWVPV_					0	0	0			REV__ENST00000330619.12_1_19:57078901-57079174:+|nuORF	REV__ENST00000330619.12_1_19:57078901-57079174:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	798.8525390625	1	798.450851	797.443575	-0.68797	-0.00054931	2.0593	0.0016443	1.3714	0.001095	798.4522555306238	133.85	0.25488	133.85	133.76	134.02	0					6	4	2	0	0	0	0.972	1	51648	51648		2.8892	0	1	2055200	+		57876	23621	42195	42527	56490	56490					0.036750495311821396
VGACFFFF	8	Unmodified	_VGACFFFF_					0	0	0		ENST00000269499.9_2_18:60244002-60244146:+|nuORF	ENST00000269499.9_2_18:60244002-60244146:+|nuORF	ENST00000269499.9_2_18:60244002-60244146:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	469.63653564453125	2	469.217475	936.420396	-0.27967	-0.00013123	-0.78855	-0.00037	-1.0682	-0.00050123	469.21794182831565	72.927	0.45618	72.927	72.728	73.184	0					12	8	2	0	0	0	0.77554	1	26614	26614		11.114	4.3913	1	593580			57877	10370	42196	42528	56491	56491					-0.05035712577785034
VGADKIQMTW	10	Unmodified	_VGADKIQMTW_					0	0	0		nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4	nc|ENSG00000124067|Q9UP95-3|SLC12A4	nc|ENSG00000124067|Q9UP95-3|SLC12A4	MULTI-SECPEP	A375_MHC_IP_R2	2	575.1920166015625	2	574.792066	1147.56958	-0.52318	-0.00030072	0.07491	4.3058E-05	-0.44827	-0.00025766	574.7921592400133	71.622	0.55833	72.356	72.111	72.669	0.73421					14	10	2	0	0	0	0.83355	1	27194	27194		22.736	0	1	2322300			57878	3868	42197	42529	56492	56492					0.0016976825429537712
VGADRDSPTL	10	Unmodified	_VGADRDSPTL_					0	0	0		ENST00000431239.5_1_1:146714466-146724362:+|nuORF	ENST00000431239.5_1_1:146714466-146724362:+|nuORF	ENST00000431239.5_1_1:146714466-146724362:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	516.1607666015625	2	515.76182	1029.50909	-0.66165	-0.00034125	-0.77705	-0.00040077	-1.4387	-0.00074202	515.7614156906993	90.365	0.50748	91.098	90.802	91.309	0.73266					17	9	3	0	0	0	0.90853	1	34402	34402		6.7232	0	1	1713800			57879	11867	42198	42530	56493	56493					-0.004486258044153146
VGADRFSGW	9	Unmodified	_VGADRFSGW_					0	0	0			REV__ENSG00000006530|ENST00000649286|AGK	REV__ENSG00000006530|ENST00000649286|AGK	MSMS	A375_MHC_IP_R1	1	497.69537353515625	2	497.740691	993.466829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.098	1	38.098	37.598	38.598	0								0	0	0	0.15411	1	12891	12891		14.838	5.4908	1		+		57880	16137	42199	42531	56494	56494					-0.030165564221420027
VGADSVSENF	10	Unmodified	_VGADSVSENF_					0	0	0		ENST00000575475.2_1_17:5185712-5281605:+|nuORF;nc|ENSG00000029725|Q15276-2|RABEP1;ENSG00000029725|ENST00000537505|RABEP1	ENST00000575475.2_1_17:5185712-5281605:+|nuORF	ENST00000575475.2_1_17:5185712-5281605:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	513.1318969726562	2	512.732729	1023.4509	-0.57139	-0.00029297	-0.70022	-0.00035903	-1.2716	-0.000652	512.732487939288	76.783	0.61143	76.783	76.471	77.083	0					18	11	2	0	0	0	0.85226	1	27997	27997		10.074	0	1	2232300			57881	1107	42200	42532	56495	56495					-0.05988307449695185
VGADSVSENF	10	Unmodified	_VGADSVSENF_					0	0	0		ENST00000575475.2_1_17:5185712-5281605:+|nuORF;nc|ENSG00000029725|Q15276-2|RABEP1;ENSG00000029725|ENST00000537505|RABEP1	ENST00000575475.2_1_17:5185712-5281605:+|nuORF	ENST00000575475.2_1_17:5185712-5281605:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	512.189453125	2	512.732729	1023.4509	-0.74191	-0.0003804	-0.50408	-0.00025846	-1.246	-0.00063886	512.7323823102109	76.096	0.60801	76.836	76.487	77.095	0.74052					18	11	2	0	0	0	0.85226	1	28798	28798		20.454	12.543	1	1494100			57882	1107	42200	42532	56496	56496					-0.05988307449695185
VGAEGHIG	8	Unmodified	_VGAEGHIG_					0	0	0			REV__ENST00000533853.1_1_11:61109248-61110039:+|nuORF	REV__ENST00000533853.1_1_11:61109248-61110039:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	739.265625	1	739.373329	738.366053	-0.65048	-0.00048095	1.6332	0.0012075	0.9827	0.00072658	739.3741696675071	137.23	0.30849	137.31	137.2	137.51	0.083969					7	5	2	0	0	0	0.77839	1	53854	53854		0.79363	0	1	1640800	+		57883	19682	42201	42533	56497	56497					-0.013595884049891538
VGAFGKVG	8	Unmodified	_VGAFGKVG_					0	0	0			REV__ALOX12B|p.E461K|2|0.47|ENSG00000179477|chr17:8076326-8076326|C/T|missense_variant	REV__ALOX12B|p.E461K|2|0.47|ENSG00000179477|chr17:8076326-8076326|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	367.6328125	2	367.713414	733.412274	0.26474	9.7347E-05	0.62799	0.00023092	0.89273	0.00032827	367.71362816433304	63.975	0.4058	63.975	63.735	64.141	0					13	7	2	0	0	0	0.972	1	23114	23114		2.8892	0	1	854820	+		57884	15359	42202	42534	56498	56498					0.03490476497097461
VGAGALHL	8	Unmodified	_VGAGALHL_					0	0	0		ENST00000511998.1_1_3:129034238-129036147:+|nuORF	ENST00000511998.1_1_3:129034238-129036147:+|nuORF	ENST00000511998.1_1_3:129034238-129036147:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	737.830078125	1	737.43045	736.423173	-1.1685	-0.00086172	0.58424	0.00043083	-0.5843	-0.00043088	737.4308615329284	36.488	0.40649	37.259	37.106	37.513	0.7709					10	7	2	0	0	0	0.972	1	13335	13335		6.3541	0	1	2397700			57885	12914	42203	42535	56499	56499					0.04441878871386962
VGAGASLLAPV	11	Unmodified	_VGAGASLLAPV_					0	0	0		ENST00000583834.5_1_17:72767865-72768287:-|nuORF	ENST00000583834.5_1_17:72767865-72768287:-|nuORF	ENST00000583834.5_1_17:72767865-72768287:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	477.100830078125	2	477.784567	953.554582	-0.90149	-0.00043072	0.28847	0.00013782	-0.61302	-0.00029289	477.78462635142125	56.453	0.25561	57.203	57.101	57.356	0.75015					7	4	2	0	0	0	0.98416	1	21382	21382		6.2058	0	1	855590			57886	13700	42204	42536	56500	56500					0.07594644448624877
VGAGAWGL	8	Unmodified	_VGAGAWGL_					0	0	0		UMODL1|p.T698Hfs*71|1|0.44|ENSG00000177398|chr21:42111697-42111698|-/C|frameshift_variant	UMODL1|p.T698Hfs*71|1|0.44|ENSG00000177398|chr21:42111697-42111698|-/C|frameshift_variant	UMODL1|p.T698Hfs*71|1|0.44|ENSG00000177398|chr21:42111697-42111698|-/C|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	366.0979309082031	2	365.697764	729.380974	0.097315	3.5588E-05	0.31508	0.00011522	0.41239	0.00015081	365.6977930912202	70.546	0.80997	71.281	70.693	71.503	0.73421					39	15	3	0	0	0	0.77781	1	26826	26826		2.8892	0	1	9009000			57887	30118	42205	42537	56501	56501					0.005459034630007409
VGAGAWGL	8	Unmodified	_VGAGAWGL_					0	0	0		UMODL1|p.T698Hfs*71|1|0.44|ENSG00000177398|chr21:42111697-42111698|-/C|frameshift_variant	UMODL1|p.T698Hfs*71|1|0.44|ENSG00000177398|chr21:42111697-42111698|-/C|frameshift_variant	UMODL1|p.T698Hfs*71|1|0.44|ENSG00000177398|chr21:42111697-42111698|-/C|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	366.0981750488281	2	365.697764	729.380974	0.071132	2.6013E-05	0.77779	0.00028444	0.84892	0.00031045	365.6979954906145	73.892	0.40735	74.63	74.449	74.857	0.73752					13	7	2	0	0	0	0.972	1	28054	28054		0.79363	0	1	2431300			57888	30118	42205	42537	56502	56502					0.005459034630007409
VGAGAWGL	8	Unmodified	_VGAGAWGL_					0	0	0		UMODL1|p.T698Hfs*71|1|0.44|ENSG00000177398|chr21:42111697-42111698|-/C|frameshift_variant	UMODL1|p.T698Hfs*71|1|0.44|ENSG00000177398|chr21:42111697-42111698|-/C|frameshift_variant	UMODL1|p.T698Hfs*71|1|0.44|ENSG00000177398|chr21:42111697-42111698|-/C|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	365.697764	729.380974	0.097315	3.5588E-05	0.31508	0.00011522	0.41239	0.00015081	365.6977930912202	70.546	0.80997	71.281	70.693	71.503	0.73421	0.13768	-0.00010303	NaN	2.8892	39	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9009000			57889	30118	42205	42537							0.005459034630007409
VGAGDLDQDF	10	Unmodified	_VGAGDLDQDF_					0	0	0			REV__ZC3H18|p.S34F|1|0.38|ENSG00000158545|chr16:88577224-88577224|C/T|missense_variant	REV__ZC3H18|p.S34F|1|0.38|ENSG00000158545|chr16:88577224-88577224|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	518.6591186523438	2	518.732729	1035.4509	-0.55967	-0.00029032	-0.056622	-2.9371E-05	-0.6163	-0.00031969	518.7327103913171	58.09	0.86261	58.09	57.771	58.633	0					24	16	2	0	0	0	0.70329	1	20937	20937		10.824	0	1	1879700	+		57890	29014	42206	42538	56503	56503					-0.06540307449722604
VGAGGGGG	8	Unmodified	_VGAGGGGG_					0	0	0		nc|ENSG00000163618|Q9ULU8-3|CADPS;ENSG00000163618|ENST00000383710|CADPS;nc|ENSG00000163618|Q9ULU8-4|CADPS;nc|ENSG00000163618|Q9ULU8-2|CADPS;nc|ENSG00000163618|Q9ULU8-5|CADPS;TAL1|p.G271R|2|0.52|ENSG00000162367|chr1:47219905-47219905|C/T|missense_variant;nc|ENSG00000162367|P17542-3|TAL1;nc|ENSG00000162367|P17542-2|TAL1;ENSG00000162367|ENST00000691006|TAL1	nc|ENSG00000163618|Q9ULU8-3|CADPS	nc|ENSG00000163618|Q9ULU8-3|CADPS	MULTI-MSMS	A375_MHC_IP_R1	1	532.176513671875	1	531.252151	530.244875	-0.56301	-0.0002991	-4.3279	-0.0022992	-4.8909	-0.0025983	531.2483476579791	103.24	0.15264	103.24	103.12	103.27	0					4	2	2	0	0	0	0.77686	1	37933	37933		6.3541	0	1	432150			57891	6693	42207	42539	56504	56504					-0.03903791047662253
VGAGGRLY	8	Unmodified	_VGAGGRLY_					0	0	0			REV__ENSG00000105372|ENST00000598742|RPS19	REV__ENSG00000105372|ENST00000598742|RPS19	MULTI-SECPEP	A375_MHC_IP_R1	1	396.6557312011719	2	396.72177	791.428987	-0.23786	-9.4362E-05	0.55427	0.00021989	0.31641	0.00012553	396.7218104798662	27.696	0.50427	27.696	27.482	27.987	0					14	9	2	0	0	0	0.91495	1	8467	8467		24.674	0	1	3528700	+		57892	17376	42208	42540	56505	56505					0.024929773830422164
VGAGHVVAKV	10	Unmodified	_VGAGHVVAKV_					0	0	0		nc|ENSG00000204965|Q9Y5H7-2|PCDHA5;nc|ENSG00000204965|Q9Y5H7-3|PCDHA5;ENSG00000204965|ENST00000529859|PCDHA5;PCDHA2|p.S584L|1|0.25|ENSG00000204969|chr5:140796715-140796715|C/T|missense_variant;PCDHA11|p.S583L|1|0.48|ENSG00000249158|chr5:140870851-140870851|C/T|missense_variant;nc|ENSG00000239389|Q9Y5I0-2|PCDHA13;nc|ENSG00000204969|Q9Y5H9-3|PCDHA2;nc|ENSG00000249158|Q9Y5I1-2|PCDHA11;nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;nc|ENSG00000255408|Q9Y5H8-2|PCDHA3;nc|ENSG00000204969|Q9Y5H9-2|PCDHA2;ENSG00000204969|ENST00000526136|PCDHA2;ENSG00000249158|ENST00000398640|PCDHA11;ENSG00000255408|ENST00000522353|PCDHA3;ENSG00000239389|ENST00000289272|PCDHA13;ENSG00000204962|ENST00000531613|PCDHA8;nc|ENSG00000204963|Q9UN72-2|PCDHA7;ENSG00000204963|ENST00000525929|PCDHA7;nc|ENSG00000204970|Q9Y5I3-3|PCDHA1;ENSG00000204970|ENST00000504120|PCDHA1;nc|ENSG00000251664|Q9UN75-2|PCDHA12;ENSG00000251664|ENST00000398631|PCDHA12	nc|ENSG00000204965|Q9Y5H7-2|PCDHA5;nc|ENSG00000204963|Q9UN72-2|PCDHA7;nc|ENSG00000204970|Q9Y5I3-3|PCDHA1;nc|ENSG00000251664|Q9UN75-2|PCDHA12	nc|ENSG00000204963|Q9UN72-2|PCDHA7	MULTI-MSMS	A375_MHC_IP_R1	1	469.18463134765625	2	468.784902	935.55525	-0.48154	-0.00022574	0.33242	0.00015583	-0.14913	-6.9908E-05	468.78498824792797	39.973	0.45888	39.973	39.744	40.203	0					13	8	2	0	0	0	0.62155	1	13701	13701		19.257	2.1441	1	4135600			57893	9489;9490;9492;9854	42209	42541	56506	56506					0.08489483888320137
VGAGHVVAKV	10	Unmodified	_VGAGHVVAKV_					0	0	0		nc|ENSG00000204965|Q9Y5H7-2|PCDHA5;nc|ENSG00000204965|Q9Y5H7-3|PCDHA5;ENSG00000204965|ENST00000529859|PCDHA5;PCDHA2|p.S584L|1|0.25|ENSG00000204969|chr5:140796715-140796715|C/T|missense_variant;PCDHA11|p.S583L|1|0.48|ENSG00000249158|chr5:140870851-140870851|C/T|missense_variant;nc|ENSG00000239389|Q9Y5I0-2|PCDHA13;nc|ENSG00000204969|Q9Y5H9-3|PCDHA2;nc|ENSG00000249158|Q9Y5I1-2|PCDHA11;nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;nc|ENSG00000255408|Q9Y5H8-2|PCDHA3;nc|ENSG00000204969|Q9Y5H9-2|PCDHA2;ENSG00000204969|ENST00000526136|PCDHA2;ENSG00000249158|ENST00000398640|PCDHA11;ENSG00000255408|ENST00000522353|PCDHA3;ENSG00000239389|ENST00000289272|PCDHA13;ENSG00000204962|ENST00000531613|PCDHA8;nc|ENSG00000204963|Q9UN72-2|PCDHA7;ENSG00000204963|ENST00000525929|PCDHA7;nc|ENSG00000204970|Q9Y5I3-3|PCDHA1;ENSG00000204970|ENST00000504120|PCDHA1;nc|ENSG00000251664|Q9UN75-2|PCDHA12;ENSG00000251664|ENST00000398631|PCDHA12	nc|ENSG00000204965|Q9Y5H7-2|PCDHA5;nc|ENSG00000204963|Q9UN72-2|PCDHA7;nc|ENSG00000204970|Q9Y5I3-3|PCDHA1;nc|ENSG00000251664|Q9UN75-2|PCDHA12	nc|ENSG00000204963|Q9UN72-2|PCDHA7	MULTI-MSMS	A375_MHC_IP_R2	2	469.1844787597656	2	468.784902	935.55525	-0.77122	-0.00036153	0.034049	1.5962E-05	-0.73717	-0.00034557	468.7848508080402	39.143	0.56121	39.918	39.607	40.169	0.77451					14	10	2	0	0	0	0.62155	1	14465	14465		19.257	1.122	1	3425400			57894	9489;9490;9492;9854	42209	42541	56507	56507					0.08489483888320137
VGAGKGQHR	9	Unmodified	_VGAGKGQHR_					0	0	0		ENST00000326505.3_1_3:182989100-182989202:+|nuORF	ENST00000326505.3_1_3:182989100-182989202:+|nuORF	ENST00000326505.3_1_3:182989100-182989202:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	455.62091064453125	2	455.2543	908.494047	-0.27844	-0.00012676	0.68432	0.00031154	0.40588	0.00018478	455.25438991685496	95.901	0.50341	95.901	95.515	96.018	0					13	9	2	0	0	0	0.77244	1	35257	35257		2.3027	2.3027	1	513840			57895	10734	42210	42542	56508	56508					0.03613971908885105
VGAGYLGP	8	Unmodified	_VGAGYLGP_					0	0	0			REV__ENST00000589644.1_1_19:38799520-38799736:-|nuORF	REV__ENST00000589644.1_1_19:38799520-38799736:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	735.4268188476562	1	733.387916	732.38064	-0.39335	-0.00028848	0.52829	0.00038744	0.13494	9.8963E-05	733.3877086096209	78.429	0.75854	78.429	77.998	78.756	0					26	14	3	0	0	0	0.77686	1	28608	28608		6.3541	0	1	5360500	+		57896	26423	42211	42543	56509	56509					0.003744837431554515
VGAHLFLSLW	10	Unmodified	_VGAHLFLSLW_					0	0	0			REV__ENSG00000129667|ENST00000675367|RHBDF2	REV__ENSG00000129667|ENST00000675367|RHBDF2	MULTI-SECPEP	A375_MHC_IP_R1	1	571.6664428710938	2	571.821484	1141.62842	-0.47014	-0.00026883	-3.0312	-0.0017333	-3.5014	-0.0020022	571.8201310500938	84.846	0.35875	84.846	84.545	84.904	0					11	6	2	0	0	0	0.90853	1	31010	31010		15.847	5.0233	1	1265500	+		57897	18504	42212	42544	56510	56510					0.06326612610951088
VGAIPIKH	8	Unmodified	_VGAIPIKH_					0	0	0		nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000106278|P23471-3|PTPRZ1;ENST00000483995.1_1_7:121668585-121671616:+|nuORF	nc|ENSG00000106278|P23471-2|PTPRZ1	nc|ENSG00000106278|P23471-2|PTPRZ1	MULTI-SECPEP	A375_MHC_IP_R1	1	418.1634521484375	2	417.763438	833.512323	0.58289	0.00024351	-0.32808	-0.00013706	0.25481	0.00010645	417.76324665969844	44.497	0.76336	44.497	44.216	44.98	0					29	14	3	0	0	0	0.86765	1	15528	15528		32.117	0	1	9142700			57898	2679	42213	42545	56511	56511					0.08890713830885488
VGAIPIKH	8	Unmodified	_VGAIPIKH_					0	0	0		nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000106278|P23471-3|PTPRZ1;ENST00000483995.1_1_7:121668585-121671616:+|nuORF	nc|ENSG00000106278|P23471-2|PTPRZ1	nc|ENSG00000106278|P23471-2|PTPRZ1	MULTI-SECPEP	A375_MHC_IP_R2	2	417.26409912109375	2	417.763438	833.512323	0.11948	4.9915E-05	-0.21918	-9.1563E-05	-0.099695	-4.1649E-05	417.76328845765846	43.54	0.60614	44.313	44.028	44.634	0.7724					28	11	3	0	0	0	0.86765	1	16231	16231		32.117	7.4431	1	6437800			57899	2679	42213	42545	56512	56512					0.08890713830885488
VGAKGQLK	8	Unmodified	_VGAKGQLK_					0	0	0		ENST00000489655.1_1_2:74689957-74690534:-|nuORF;ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS	ENST00000489655.1_1_2:74689957-74690534:-|nuORF	ENST00000489655.1_1_2:74689957-74690534:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	401.296142578125	2	400.75307	799.491587	-0.28059	-0.00011245	0.11792	4.7256E-05	-0.16267	-6.519E-05	400.7530722601117	49.279	0.55499	50.037	49.843	50.398	0.75737					15	10	2	0	0	0	0.75322	1	18456	18456		19.439	2.4967	1	1511000			57900	3294	42214	42546	56513	56513					0.08382123451224288
VGAKGQLK	8	Unmodified	_VGAKGQLK_					0	0	0		ENST00000489655.1_1_2:74689957-74690534:-|nuORF;ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS	ENST00000489655.1_1_2:74689957-74690534:-|nuORF	ENST00000489655.1_1_2:74689957-74690534:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	400.75307	799.491587	-0.28664	-0.00011487	0.5422	0.00021729	0.25556	0.00010242	400.7532515700373	50.279	0.40953	50.279	50.049	50.459	0	0.12132	0.0002233	NaN	19.439	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1462900			57901	3294	42214	42546							0.08382123451224288
VGAKHQLL	8	Unmodified	_VGAKHQLL_					0	0	0			REV__ENST00000596924.1_1_19:58858141-58858360:-|nuORF	REV__ENST00000596924.1_1_19:58858141-58858360:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	433.12017822265625	2	433.266345	864.518136	-0.32658	-0.00014149	0.15601	6.7593E-05	-0.17057	-7.3902E-05	433.26635988956644	27.041	0.8669	27.719	27.484	28.351	0.67857					41	16	4	0	0	0	0.77603	1	9440	9440		9.3474	0	1	66362000	+		57902	26476	42215	42547	56514	56514					0.08045812342561476
VGALGQVA	8	Unmodified	_VGALGQVA_					0	0	0			REV__ENST00000555993.6_1_14:71267787-71275967:-|nuORF	REV__ENST00000555993.6_1_14:71267787-71275967:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	714.8140869140625	1	714.414465	713.407189	-0.67955	-0.00048548	-0.33386	-0.00023852	-1.0134	-0.00072399	714.4143350130057	133.38	0.50554	133.55	133.35	133.85	0.16487					14	9	2	0	0	0	0.972	1	52470	52470		2.8892	0	1	3471500	+		57903	26102	42216	42548	56515	56515					0.039021726344572016
VGAMLQSQPPC	11	Unmodified	_VGAMLQSQPPC_					0	0	0			REV__ENST00000487398.3_1_9:36572986-36581650:+|nuORF	REV__ENST00000487398.3_1_9:36572986-36581650:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	565.7218627929688	2	565.770277	1129.526	-0.35388	-0.00020021	0.17005	9.6211E-05	-0.18382	-0.000104	565.7703576383003	52.212	0.35313	52.212	52.034	52.387	0					8	6	2	0	0	0	0.72565	1	18532	18532		13.042	0	1	557430	+		57904	25333	42217	42549	56516	56516					-0.03358164514474993
VGANIFNGNL	10	Unmodified	_VGANIFNGNL_					0	0	0		ENST00000553618.1_1_14:67665960-67666731:+|nuORF	ENST00000553618.1_1_14:67665960-67666731:+|nuORF	ENST00000553618.1_1_14:67665960-67666731:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	509.432861328125	2	509.769448	1017.52434	-0.69262	-0.00035308	-0.17983	-9.1672E-05	-0.87245	-0.00044475	510.2706080495042	73.469	0.50974	74.204	73.836	74.345	0.73541					13	9	2	0	0	0	0.85226	1	27833	27833		10.074	2.1638	1	1134100			57905	13406	42218	42550	56517	56517					0.01628285783431238
VGAPFTGSSL	10	Unmodified	_VGAPFTGSSL_					0	0	0		ENSG00000103522|ENST00000337929|IL21R	ENSG00000103522|ENST00000337929|IL21R	ENSG00000103522|ENST00000337929|IL21R	MULTI-SECPEP	A375_MHC_IP_R2	2	467.63714599609375	2	468.245275	934.475997	-0.77591	-0.00036331	0.223	0.00010442	-0.5529	-0.00025889	468.2453827897144	66.257	0.51064	66.994	66.729	67.24	0.73687					13	9	2	0	0	0	0.83086	1	25157	25157		15.847	2.3393	1	1126700			57906	2459	42219	42551	56518	56518					0.006137921435311
VGAPLPAS	8	Unmodified	_VGAPLPAS_					0	0	0			REV__nc|ENSG00000105701|Q14318-3|FKBP8	REV__nc|ENSG00000105701|Q14318-3|FKBP8	MSMS	A375_MHC_IP_R1	1	356.60687255859375	2	356.205421	710.39629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.98	1	68.98	68.48	69.48	0								0	0	0	0.16876	1	25024	25024		2.5775	0	1		+		57907	17404	42220	42552	56519	56519					0.029507702601904384
VGAPRERA	8	Unmodified	_VGAPRERA_					0	0	0		ENST00000330539.1_1_8:37593798-37594005:-|nuORF	ENST00000330539.1_1_8:37593798-37594005:-|nuORF	ENST00000330539.1_1_8:37593798-37594005:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	855.8782958984375	1	855.479525	854.472249	-0.61148	-0.00052311	-0.39067	-0.00033421	-1.0022	-0.00085732	855.4794712554674	103.39	1.8307	104.15	103.58	105.41	0.76428					52	35	2	0	0	0	0.77781	1	39119	39119		2.8892	0	1	1914600			57908	10760	42221	42553	56520	56520					0.039191671603248324
VGAPRERA	8	Unmodified	_VGAPRERA_					0	0	0		ENST00000330539.1_1_8:37593798-37594005:-|nuORF	ENST00000330539.1_1_8:37593798-37594005:-|nuORF	ENST00000330539.1_1_8:37593798-37594005:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	855.479525	854.472249	-0.27635	-0.00023641	0.0093691	8.0151E-06	-0.26698	-0.00022839	855.4796570449441	104.07	2.0325	104.07	103.32	105.35	0	-0.038395	0.00014978	NaN	2.8892	54	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2474700			57909	10760	42221	42553							0.039191671603248324
VGAPRERA	8	Unmodified	_VGAPRERA_					0	0	0		ENST00000330539.1_1_8:37593798-37594005:-|nuORF	ENST00000330539.1_1_8:37593798-37594005:-|nuORF	ENST00000330539.1_1_8:37593798-37594005:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	855.479525	854.472249	-0.61148	-0.00052311	-0.39067	-0.00033421	-1.0022	-0.00085732	855.4794712554674	103.39	1.8307	104.15	103.58	105.41	0.76428	0.038395	-0.00019245	NaN	2.8892	52	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1914600			57910	10760	42221	42553							0.039191671603248324
VGAQRSRVL	9	Unmodified	_VGAQRSRVL_					0	0	0			REV__ELANE|p.G192S|1|0.61|ENSG00000197561|chr19:855771-855771|G/A|missense_variant	REV__ELANE|p.G192S|1|0.61|ENSG00000197561|chr19:855771-855771|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	492.7015686035156	2	493.298707	984.582862	-0.48914	-0.00024129	3.9292	0.0019383	3.4401	0.001697	493.3011116710121	62.758	0.50406	63.501	63.383	63.888	0.74263					16	9	2	0	0	0	0.78348	1	23896	23896		4.3292	2.0265	1	2149000	+		57911	16073	42222	42554	56521	56521					0.08995387148559075
VGARAELL	8	Unmodified	_VGARAELL_					0	0	0			REV__nc|ENSG00000072195|Q15772-1|SPEG	REV__nc|ENSG00000072195|Q15772-1|SPEG	MULTI-MSMS	A375_MHC_IP_R2	2	415.150390625	2	414.750527	827.486502	-0.40874	-0.00016952	-0.13493	-5.5961E-05	-0.54366	-0.00022549	414.7504235929161	59.223	1.013	59.97	59.59	60.603	0.74714					43	19	4	0	0	0	0.1699	1	22341	22341		71.134	0	1	28177000	+		57912	16601	42223	42555	56522	56522					0.06585819588610775
VGARLNIATS	10	Unmodified	_VGARLNIATS_					0	0	0		ENST00000227451.3_1_11:58972400-58972907:+|nuORF	ENST00000227451.3_1_11:58972400-58972907:+|nuORF	ENST00000227451.3_1_11:58972400-58972907:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1002.834716796875	1	1001.57382	1000.56654	0.66959	0.00067064	-1.9243	-0.0019274	-1.2547	-0.0012567	1001.5719904090466	114.7	0.20406	114.7	114.57	114.77	0					5	3	2	0	0	0	0.71866	1	42060	42060		3.9444	1.6417	1	2305300			57913	10124	42224	42556	56523	56523					0.06628261191792717
VGARLRGSG	9	Unmodified	_VGARLRGSG_					0	0	0		chr17:81824552-81833238|123|22.47|0.45|5.65|-|1|None,MCRIP1|1	chr17:81824552-81833238|123|22.47|0.45|5.65|-|1|None,MCRIP1|1	chr17:81824552-81833238|123|22.47|0.45|5.65|-|1|None,MCRIP1|1	MULTI-SECPEP	A375_MHC_IP_R2	2	871.8472290039062	1	872.506074	871.498798	-0.53554	-0.00046726	0.27268	0.00023792	-0.26285	-0.00022934	872.5061425863347	103.35	1.2716	104.12	103.48	104.75	0.76428					46	24	2	0	0	0	0.77834	1	39347	39347		4.756	0	1	8421700			57914	449	42225	42557	56524	56524					0.0579085605166938
VGARLSTSL	9	Unmodified	_VGARLSTSL_					0	0	0		ENST00000413037.1_1_2:24305820-24305973:-|nuORF	ENST00000413037.1_1_2:24305820-24305973:-|nuORF	ENST00000413037.1_1_2:24305820-24305973:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	452.6666564941406	2	452.266542	902.51853	0.063827	2.8867E-05	0.31664	0.00014321	0.38047	0.00017207	452.26665681196044	45.545	0.50443	45.545	45.284	45.789	0					14	9	2	0	0	0	0.74651	1	15945	15945		8.5933	8.5933	1	3168400			57915	11651	42226	42558	56525	56525					0.06337187271753919
VGARPGRV	8	Unmodified	_VGARPGRV_					0	0	0		ENST00000260447.5_1_15:41056290-41058050:+|nuORF	ENST00000260447.5_1_15:41056290-41058050:+|nuORF	ENST00000260447.5_1_15:41056290-41058050:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	811.993896484375	1	811.489696	810.48242	-0.54744	-0.00044424	-1.261	-0.0010233	-1.8084	-0.0014675	811.4884533854738	125.06	0.40031	125.06	124.85	125.25	0					11	7	2	0	0	0	0.972	1	47234	47234		5.7604	3.1829	1	29727000			57916	10268	42227	42559	56526	56526					0.06959774885558545
VGARPLLL	8	Unmodified	_VGARPLLL_					0	0	0			REV__ENST00000467799.6_1_10:98031253-98031343:-|nuORF	REV__ENST00000467799.6_1_10:98031253-98031343:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	420.17938232421875	2	419.779088	837.543623	0.13284	5.5762E-05	0.024187	1.0153E-05	0.15702	6.5915E-05	419.7790651334016	103.87	0.60995	103.87	103.52	104.13	0					21	11	2	0	0	0	0.96266	1	38111	38111		16.942	0	1	1242300	+		57917	25060	42228	42560	56527	56527					0.11835286864993577
VGARRARA	8	Unmodified	_VGARRARA_					0	0	0		ENST00000261211.7_1_12:96794037-96794286:-|nuORF	ENST00000261211.7_1_12:96794037-96794286:-|nuORF	ENST00000261211.7_1_12:96794037-96794286:-|nuORF	MSMS	A375_MHC_IP_R2	2	428.644775390625	2	428.764835	855.515117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.06	1	134.23	133.73	134.73	0.16487								0	0	0	0.16876	1	52740	52740		0.79363	0	1				57918	10275	42229	42561	56528	56528					0.08157982008401632
VGARRQLF	8	Unmodified	_VGARRQLF_					0	0	0			REV__nc|ENSG00000176700|Q9GZW5-2|SCAND2P	REV__nc|ENSG00000176700|Q9GZW5-2|SCAND2P	MSMS	A375_MHC_IP_R2	2	473.69189453125	2	473.782693	945.550834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.179	1	81.924	81.424	82.424	0.74474								0	0	0	0.16876	1	30825	30825		11.114	0.93107	1		+		57919	23789	42230	42562	56529	56529					0.07588019465401885
VGARYIQTL	9	Unmodified	_VGARYIQTL_					0	0	0		ENSG00000177830|ENST00000323578|CHID1;nc|ENSG00000177830|Q9BWS9-3|CHID1;nc|ENSG00000177830|Q9BWS9-2|CHID1	ENSG00000177830|ENST00000323578|CHID1	ENSG00000177830|ENST00000323578|CHID1	MULTI-SECPEP	A375_MHC_IP_R1	1	510.6789245605469	2	510.795466	1019.57638	-0.67288	-0.0003437	-0.018787	-9.5963E-06	-0.69166	-0.0003533	510.79540180913483	30.868	0.60725	30.868	30.553	31.16	0					17	11	2	0	0	0	0.65246	1	9780	9780		15.847	7.2539	1	2439500			57920	8110	42231	42563	56530	56530					0.06737449197191836
VGARYVII	8	Unmodified	_VGARYVII_					0	0	0			REV__ENSG00000134627|ENST00000299001|PIWIL4	REV__ENSG00000134627|ENST00000299001|PIWIL4	MULTI-SECPEP	A375_MHC_IP_R1	1	446.1764221191406	2	445.776545	889.538538	-0.066124	-2.9476E-05	-0.45129	-0.00020117	-0.51741	-0.00023065	445.7764334106728	99.599	0.40149	99.599	99.473	99.875	0					13	7	2	0	0	0	0.93416	1	36612	36612		20.871	6.2895	1	2990500	+		57921	18791	42232	42564	56531	56531					0.089349830023707
VGARYVII	8	Unmodified	_VGARYVII_					0	0	0			REV__ENSG00000134627|ENST00000299001|PIWIL4	REV__ENSG00000134627|ENST00000299001|PIWIL4	MULTI-SECPEP	A375_MHC_IP_R2	2	446.17657470703125	2	445.776545	889.538538	-0.32352	-0.00014422	0.041006	1.828E-05	-0.28252	-0.00012594	445.7765688921243	98.537	0.50882	99.296	99.047	99.556	0.75977					16	9	2	0	0	0	0.97144	1	37386	37386		14.582	0	1	2394500	+		57922	18791	42232	42564	56532	56532					0.089349830023707
VGARYVIIRA	10	Unmodified	_VGARYVIIRA_					0	0	0			REV__ENSG00000134627|ENST00000299001|PIWIL4	REV__ENSG00000134627|ENST00000299001|PIWIL4	MULTI-MSMS	A375_MHC_IP_R2	2	373.6329345703125	3	373.232864	1116.67676	0.28727	0.00010722	-0.312	-0.00011645	-0.024722	-9.2272E-06	373.23275359412264	36.157	0.45894	36.927	36.749	37.207	0.7709					14	8	2	0	0	0	0.66857	1	13153	13153		15.739	6.7624	1	4030800	+		57923	18791	42233	42565	56533	56533					0.12309106250836521
VGASGFVF	8	Unmodified	_VGASGFVF_					0	0	0			REV__ENST00000524189.5_1_8:28925998-28926520:-|nuORF	REV__ENST00000524189.5_1_8:28925998-28926520:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	782.70556640625	1	783.403566	782.39629	-0.44592	-0.00034933	2.5802	0.0020214	2.1343	0.001672	783.4075477089062	125.46	0.35389	125.46	125.35	125.7	0					11	6	3	0	0	0	0.97144	1	47795	47795		9.3474	0.75416	1	31557000	+		57924	25751	42234	42566	56534	56534					-0.00361229739803548
VGASLSLLFL	10	Unmodified	_VGASLSLLFL_					0	0	0			REV__ENST00000506102.5_1_3:125725861-125741959:-|nuORF	REV__ENST00000506102.5_1_3:125725861-125741959:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	510.70953369140625	2	510.310418	1018.60628	-0.76381	-0.00038978	0.22353	0.00011407	-0.54028	-0.00027571	510.31042805727026	107.95	1.0223	108.71	108.25	109.27	0.75436					39	19	3	0	0	0	0.43292	1	40733	40733		39.957	7.1716	1	11033000	+		57925	25547	42235	42567	56535	56535					0.09772388142516775
VGASSCGW	8	Unmodified	_VGASSCGW_					0	0	0		ENST00000409556.5_1_2:86705773-86709083:+|nuORF	ENST00000409556.5_1_2:86705773-86709083:+|nuORF	ENST00000409556.5_1_2:86705773-86709083:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	766.7374267578125	1	766.318851	765.311574	-0.87876	-0.00067341	-1.0347	-0.00079291	-1.9135	-0.0014663	766.3168022658896	125.42	0.25029	125.72	125.57	125.82	0.2951					6	4	2	0	0	0	0.972	1	48932	48932		2.5775	0	1	5527900			57926	11637	42236	42568	56536	56536					-0.08046923548079121
VGAVGRQR	8	Unmodified	_VGAVGRQR_					0	0	0		ENST00000586748.5_1_19:11039095-11039324:-|nuORF	ENST00000586748.5_1_19:11039095-11039324:-|nuORF	ENST00000586748.5_1_19:11039095-11039324:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	421.14385986328125	2	421.751393	841.488233	0.052333	2.2071E-05	0.68819	0.00029025	0.74052	0.00031232	421.75159289410146	103.21	1.0176	103.21	102.76	103.78	0					33	19	2	0	0	0	0.972	1	37969	37969		2.5775	1.7838	1	1659200			57927	13731	42237	42569	56537	56537					0.061148733972345326
VGAVGRQR	8	Unmodified	_VGAVGRQR_					0	0	0		ENST00000586748.5_1_19:11039095-11039324:-|nuORF	ENST00000586748.5_1_19:11039095-11039324:-|nuORF	ENST00000586748.5_1_19:11039095-11039324:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	422.1513977050781	2	421.751393	841.488233	-0.11274	-4.7547E-05	0.32694	0.00013789	0.2142	9.0339E-05	421.7514351761792	126.97	0.70901	127.23	127.06	127.77	0.26593					20	13	2	0	0	0	0.77717	1	49707	49707		5.2307	0	1	27479000			57928	13731	42237	42569	56538	56538					0.061148733972345326
VGAVGRQR	8	Unmodified	_VGAVGRQR_					0	0	0		ENST00000586748.5_1_19:11039095-11039324:-|nuORF	ENST00000586748.5_1_19:11039095-11039324:-|nuORF	ENST00000586748.5_1_19:11039095-11039324:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	421.751393	841.488233	0.41665	0.00017572	-0.32645	-0.00013768	0.090206	3.8044E-05	421.75118787898435	127.31	0.40639	127.31	127.11	127.52	0	0.038047	-0.00042839	NaN	5.2307	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23767000			57929	13731	42237	42569							0.061148733972345326
VGAVLQRSQ	9	Unmodified	_VGAVLQRSQ_					0	0	0		ENST00000429403.5_1_3:5213836-5214358:+|nuORF	ENST00000429403.5_1_3:5213836-5214358:+|nuORF	ENST00000429403.5_1_3:5213836-5214358:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	479.6773376464844	2	479.277441	956.540328	-0.44288	-0.00021226	0.18313	8.7771E-05	-0.25974	-0.00012449	479.27740587608423	109.27	5.8121	110.01	107.38	113.19	0.74683					289	113	4	0	0	0	0.75251	1	40842	40842		2.3027	0	1	18458000			57930	11843	42238	42570	56539	56539					0.060319920203255606
VGAVLVWCLVY	11	Unmodified	_VGAVLVWCLVY_					0	0	0		ENST00000474427.6_1_6:134493222-134493432:-|nuORF	ENST00000474427.6_1_6:134493222-134493432:-|nuORF	ENST00000474427.6_1_6:134493222-134493432:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	610.5842895507812	2	611.338652	1220.66275	-0.071502	-4.3712E-05	-0.40054	-0.00024487	-0.47205	-0.00028858	611.3386353206893	108.56	1.1165	108.56	108.21	109.32	0					39	21	5	0	0	0	0.97871	1	39734	39734		10.824	4.1008	1	5855800			57931	12404	42239	42571	56540	56540					0.061246927075444546
VGAVSIRGDK	10	Unmodified	_VGAVSIRGDK_					0	0	0			REV__nc|ENSG00000125166|P00505-2|GOT2	REV__nc|ENSG00000125166|P00505-2|GOT2	MULTI-MSMS	A375_MHC_IP_R1	1	501.6904296875	2	501.290548	1000.56654	0.040667	2.0386E-05	-0.013379	-6.7069E-06	0.027288	1.3679E-05	501.2904445562053	114.39	5.9949	114.39	111.52	117.51	0					272	117	3	0	0	0	0.71245	1	41481	41481		6.7232	0.51738	1	35626000	+		57932	18330	42240	42572	56541	56541					0.06628261191804086
VGAYTNIY	8	Unmodified	_VGAYTNIY_					0	0	0			REV__ENSG00000169508|ENST00000376414|GPR183	REV__ENSG00000169508|ENST00000376414|GPR183	MSMS	A375_MHC_IP_R2	2	450.69256591796875	2	450.726718	899.438883	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.865	1	38.64	38.14	39.14	0.77451								0	0	0	0.16876	1	13890	13890		9.3474	0.75416	1		+		57933	20932	42241	42573	56542	56542					-0.014858794022416077
VGCAVREFTF	10	Unmodified	_VGCAVREFTF_					0	0	0		ENSG00000179600|ENST00000621500|GPHB5	ENSG00000179600|ENST00000621500|GPHB5	ENSG00000179600|ENST00000621500|GPHB5	MSMS	A375_MHC_IP_R1	1	376.92095947265625	3	376.855065	1127.54336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.79	1	36.79	36.29	37.29	0								0	0	0	0.15353	1	12348	12348		5.4027	0	1				57934	8242	42242	42574	56543	56543					-0.015305009171697748
VGCDLPQTHSL	11	Unmodified	_VGCDLPQTHSL_					0	0	0		ENSG00000188379|ENST00000380206|IFNA2	ENSG00000188379|ENST00000380206|IFNA2	ENSG00000188379|ENST00000380206|IFNA2	MSMS	A375_MHC_IP_R1	1	585.22802734375	2	585.284605	1168.55466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.61	1	104.61	104.11	105.11	0								0	0	0	0.15541	1	38411	38411		17.113	4.5813	1				57935	8905	42243	42575	56544	56544					-0.022877236136764623
VGCEQGTSV	9	Unmodified	_VGCEQGTSV_					0	0	0			REV__ENSG00000090861|ENST00000261772|AARS1	REV__ENSG00000090861|ENST00000261772|AARS1	MSMS	A375_MHC_IP_R2	2	440.11767578125	2	440.197467	878.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.324	1	55.075	54.575	55.575	0.75075								0	0	0	0.15486	1	20501	20501		7.9102	0	1		+		57936	16933	42244	42576	56545	56545					-0.06367304039008559
VGCFAQMY	8	Unmodified	_VGCFAQMY_					0	0	0		OR10A3|p.L105F|1|0.86|ENSG00000170683|chr11:7939208-7939208|G/A|missense_variant;ENSG00000170683|ENST00000642047|OR10A3	OR10A3|p.L105F|1|0.86|ENSG00000170683|chr11:7939208-7939208|G/A|missense_variant	OR10A3|p.L105F|1|0.86|ENSG00000170683|chr11:7939208-7939208|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	459.6283874511719	2	459.696049	917.377545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.129	1	64.129	63.629	64.629	0								0	0	0	0.16876	1	23196	23196		5.7604	0.52976	1				57937	7531	42245	42577	56546	56546					-0.08444850697537731
VGCGLPGETV	10	Unmodified	_VGCGLPGETV_					0	0	0			REV__nc|ENSG00000117971|P30926-2|CHRNB4	REV__nc|ENSG00000117971|P30926-2|CHRNB4	MSMS	A375_MHC_IP_R2	2	466.1771545410156	2	466.23131	930.448068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.79	1	104.56	104.06	105.06	0.76428								0	0	0	0.14862	1	39294	39294		20.454	5.6154	1		+		57938	27191	42246	42578	56547	56547					-0.019938541082183292
VGCICVEDN	9	Unmodified	_VGCICVEDN_					0	0	0		ENST00000475962.5_1_22:39516350-39545814:-|nuORF	ENST00000475962.5_1_22:39516350-39545814:-|nuORF	ENST00000475962.5_1_22:39516350-39545814:-|nuORF	MSMS	A375_MHC_IP_R1	1	476.15069580078125	2	476.199153	950.383753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.744	1	44.744	44.244	45.244	0								0	0	0	0.15486	1	15626	15626		7.9102	0.62092	1				57939	12428	42247	42579	56548	56548					-0.09342377256677992
VGCKCADC	8	Unmodified	_VGCKCADC_					0	0	0			REV__nc|ENSG00000106443|O94880-2|PHF14	REV__nc|ENSG00000106443|O94880-2|PHF14	MSMS	A375_MHC_IP_R1	1	399.6506652832031	2	399.650784	797.287016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.7659	1	1.7659	1.2659	2.2659	0								0	0	0	0.16876	1	405	405		0	0	1		+		57940	17449	42248	42580	56549	56549					-0.11973643017472568
VGCPAGIWKI	10	Unmodified	_VGCPAGIWKI_					0	0	0		ENST00000594814.5_1_4:110791002-110791044:+|nuORF	ENST00000594814.5_1_4:110791002-110791044:+|nuORF	ENST00000594814.5_1_4:110791002-110791044:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	522.7333374023438	2	522.288963	1042.56337	-0.42639	-0.0002227	1.2731	0.00066494	0.84673	0.00044224	522.2912660765385	82.869	0.60454	82.869	82.622	83.226	0					15	11	2	0	0	0	0.91909	1	30250	30250		9.3831	2.0939	1	1293200			57941	13833	42249	42581	56550	56550					0.04379294813429624
VGCSLVRLSW	10	Unmodified	_VGCSLVRLSW_					0	0	0			REV__ENST00000490931.1_1_1:11171595-11175545:-|nuORF	REV__ENST00000490931.1_1_1:11171595-11175545:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	374.4333801269531	3	373.870826	1118.59065	0.21653	8.0956E-05	-1.0343	-0.00038669	-0.81775	-0.00030573	373.8704906913324	36.346	0.50939	37.117	36.799	37.308	0.7709					11	9	2	0	0	0	0.92957	1	13167	13167		3.3196	0	1	1182300	+		57942	25394	42250	42582	56551	56551					0.03609778353825277
VGCVTHEDVFS	11	Unmodified	_VGCVTHEDVFS_					0	0	0			REV__ENST00000484672.5_1_22:19898593-19905733:-|nuORF	REV__ENST00000484672.5_1_22:19898593-19905733:-|nuORF	MSMS	A375_MHC_IP_R1	1	596.6649169921875	2	596.768788	1191.52302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.912	1	82.912	82.412	83.412	0								0	0	0	0.16191	1	30329	30329		8.7454	0.83525	1		+		57943	21822	42251	42583	56552	56552					-0.06507716367673311
VGDCTQTPWL	10	Unmodified	_VGDCTQTPWL_					0	0	0		EDAR|p.S313Lfs*59|1|0.3|ENSG00000135960|chr2:108907886-108907886|A/-|frameshift_variant;ENSG00000135960|ENST00000258443|EDAR;nc|ENSG00000135960|Q9UNE0-2|EDAR	EDAR|p.S313Lfs*59|1|0.3|ENSG00000135960|chr2:108907886-108907886|A/-|frameshift_variant	EDAR|p.S313Lfs*59|1|0.3|ENSG00000135960|chr2:108907886-108907886|A/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	560.2151489257812	2	560.260599	1118.50665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.68	1	131.68	131.18	132.18	0								0	0	0	0.15332	1	50767	50767		10.074	1.4806	1				57944	819	42252	42584	56553	56553					-0.04786797533756726
VGDEHLSSTP	10	Unmodified	_VGDEHLSSTP_					0	0	0			REV__nc|ENSG00000092203|O94842-3|TOX4	REV__nc|ENSG00000092203|O94842-3|TOX4	MSMS	A375_MHC_IP_R2	2	521.208251953125	2	521.246003	1040.47745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.126	1	51.881	51.381	52.381	0.75406								0	0	0	0.15353	1	19239	19239		9.3831	0	1		+		57945	16967	42253	42585	56554	56554					-0.04116618558373375
VGDEKGGGLF	10	Unmodified	_VGDEKGGGLF_					0	0	0		ENSG00000266967|ENST00000427569|AARSD1;nc|ENSG00000266967|Q9BTE6-2|AARSD1;nc|ENSG00000266967|Q9BTE6-3|AARSD1;ENST00000474578.1_1_17:41102677-41107213:-|nuORF	ENSG00000266967|ENST00000427569|AARSD1	ENSG00000266967|ENST00000427569|AARSD1	MULTI-SECPEP	A375_MHC_IP_R2	2	490.1480407714844	2	489.748182	977.481811	-0.68717	-0.00033654	0.35294	0.00017285	-0.33423	-0.00016369	489.7482405536179	40.637	0.55878	41.412	41.031	41.59	0.77451					13	10	2	0	0	0	0.73104	1	15031	15031		24.991	9.1438	1	3104900			57946	9963	42254	42586	56555	56555					-0.007831093447862258
VGDEPPHKY	9	Unmodified	_VGDEPPHKY_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-MSMS	A375_MHC_IP_R1	1	521.2081909179688	2	521.253631	1040.49271	-0.33436	-0.00017429	-0.59087	-0.00030799	-0.92523	-0.00048228	521.2535654954419	51.753	0.45517	51.753	51.475	51.93	0					10	8	2	0	0	0	0.60101	1	18434	18434		14.838	2.3067	1	1116500	+		57947	18059	42255	42587	56556	56556					-0.025917069705201357
VGDGLRRQQPP	11	Unmodified	_VGDGLRRQQPP_					0	0	0			REV__ENSG00000143479|ENST00000367109|DYRK3	REV__ENSG00000143479|ENST00000367109|DYRK3	MULTI-MSMS	A375_MHC_IP_R1	1	408.6263427734375	3	408.226549	1221.65782	0.17756	7.2484E-05	-0.44294	-0.00018082	-0.26538	-0.00010834	408.2263384616581	22.024	0.50939	22.024	21.757	22.267	0					24	8	4	0	0	0	0.72909	1	5859	5859		9.7643	3.1408	1	6272800	+		57948	19361	42256	42588	56557	56557					0.055855248891248266
VGDGLRRQQPP	11	Unmodified	_VGDGLRRQQPP_					0	0	0			REV__ENSG00000143479|ENST00000367109|DYRK3	REV__ENSG00000143479|ENST00000367109|DYRK3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	408.226549	1221.65782	0.17756	7.2484E-05	-0.44294	-0.00018082	-0.26538	-0.00010834	408.2263384616581	22.024	0.50939	22.024	21.757	22.267	0	0	0	NaN	9.7643	24	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6272800	+		57949	19361	42256	42588							0.055855248891248266
VGDNTATAVQ	10	Unmodified	_VGDNTATAVQ_					0	0	0			REV__tr|U7SQW6|U7SQW6_FUSNUThioredoxinreductase(NADPH)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01607PE=4SV=1	REV__tr|U7SQW6|U7SQW6_FUSNUThioredoxinreductase(NADPH)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01607PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	488.6401062011719	2	488.240721	974.466889	-0.45701	-0.00022313	-0.43961	-0.00021464	-0.89662	-0.00043777	488.24048264142294	98.825	1.7773	99.585	99.201	100.98	0.75977					85	34	4	0	0	0	0.69306	1	37644	37644		13.906	0.86358	1	40834000	+		57950	28387	42257	42589	56558	56558					-0.021366012128055445
VGDNYNYSL	9	Unmodified	_VGDNYNYSL_					0	0	0		tr|U7SNP6|U7SNP6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01840PE=4SV=1	tr|U7SNP6|U7SNP6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01840PE=4SV=1	tr|U7SNP6|U7SNP6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01840PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1345825195312	2	522.735271	1043.45599	-0.50878	-0.00026596	-0.55582	-0.00029054	-1.0646	-0.0005565	522.7349161878811	88.287	0.70927	89.018	88.57	89.279	0.7318					22	13	2	0	0	0	0.75466	1	33536	33536		7.9102	0.62092	1	5121300			57951	29558	42258	42590	56559	56559					-0.064000035871004
VGDPNSFLNY	10	Unmodified	_VGDPNSFLNY_					0	0	0		ENSG00000164951|ENST00000297598|PDP1;nc|ENSG00000164951|Q9P0J1-2|PDP1	ENSG00000164951|ENST00000297598|PDP1	ENSG00000164951|ENST00000297598|PDP1	MULTI-MSMS	A375_MHC_IP_R1	1	563.6641235351562	2	563.264196	1124.51384	-0.57406	-0.00032335	0.56163	0.00031635	-0.01243	-7.0016E-06	563.2643193997683	95.018	0.61035	95.018	94.651	95.261	0					25	11	3	0	0	0	0.0090409	1	34904	34904		93.166	31.808	1	2630900			57952	6898	42259	42591	56560	56560					-0.04343741661659806
VGDPSTRSW	9	Unmodified	_VGDPSTRSW_					0	0	0		nc|ENSG00000105290|P51693|APLP1;ENSG00000105290|ENST00000221891|APLP1	nc|ENSG00000105290|P51693|APLP1	nc|ENSG00000105290|P51693|APLP1	MULTI-MSMS	A375_MHC_IP_R1	1	503.6788635253906	2	502.743431	1003.47231	-0.42896	-0.00021566	1.5563	0.00078242	1.1273	0.00056676	502.74325561388736	58.977	0.81424	58.977	58.481	59.295	0					36	15	3	0	0	0	0.58047	1	21237	21237		15.847	1.0089	1	3797500			57953	2587	42260	42592	56561	56561					-0.029288776303246777
VGDQIIGDL	9	Unmodified	_VGDQIIGDL_					0	0	0			REV__ENSG00000156502|ENST00000359655|SUPV3L1	REV__ENSG00000156502|ENST00000359655|SUPV3L1	MULTI-SECPEP	A375_MHC_IP_R2	2	928.9237060546875	1	929.493838	928.486562	-0.25196	-0.00023419	0.087152	8.1007E-05	-0.1648	-0.00015318	929.4935963266028	103.35	0.71207	104.12	103.79	104.5	0.76428					29	13	3	0	0	0	0.46045	1	39239	39239		36.127	16.87	1	12045000	+		57954	19984	42261	42593	56562	56562					0.01945774797957256
VGDQIIGDL	9	Unmodified	_VGDQIIGDL_					0	0	0			REV__ENSG00000156502|ENST00000359655|SUPV3L1	REV__ENSG00000156502|ENST00000359655|SUPV3L1	MULTI-MATCH	A375_MHC_IP_R1	1		1	929.493838	928.486562	-0.025294	-2.3511E-05	0.3631	0.0003375	0.33781	0.00031399	929.4938468137279	104.14	0.71172	104.14	103.83	104.54	0	0.011074	0.00012494	NaN	36.127	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13559000	+		57955	19984	42261	42593							0.01945774797957256
VGDRGDSGP	9	Unmodified	_VGDRGDSGP_					0	0	0			REV__ENSG00000176771|ENST00000409261|NCKAP5	REV__ENSG00000176771|ENST00000409261|NCKAP5	MULTI-MSMS	A375_MHC_IP_R1	1	430.647705078125	2	430.198856	858.383159	-0.10584	-4.5531E-05	-0.41909	-0.00018029	-0.52493	-0.00022582	430.1986714756185	37.671	0.6641	37.671	37.351	38.016	0					26	12	3	0	0	0	0.68216	1	12734	12734		8.5933	2.8329	1	5499600	+		57956	21417	42262	42594	56563	56563					-0.05169712589838582
VGDSIMESHI	10	Unmodified	_VGDSIMESHI_					0	0	0			REV__tr|U7SUG8|U7SUG8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01230PE=3SV=1	REV__tr|U7SUG8|U7SUG8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01230PE=3SV=1	MSMS	A375_MHC_IP_R2	2	544.1834106445312	2	544.258056	1086.50156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.79	1	59.537	59.037	60.037	0.74714								0	0	0	0.14673	1	22244	22244		24.021	0.87215	1		+		57957	28558	42263	42595	56564	56564					-0.038231013963468286
VGDTVETLMV	10	Unmodified	_VGDTVETLMV_					0	0	0		ENST00000431510.1_1_3:39425059-39430855:+|nuORF	ENST00000431510.1_1_3:39425059-39430855:+|nuORF	ENST00000431510.1_1_3:39425059-39430855:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	355.4600524902344	3	355.182847	1062.52671	-0.16774	-5.9579E-05	-3.1015	-0.0011016	-3.2692	-0.0011612	355.18186232224787	41.906	0.25783	41.906	41.674	41.932	0					6	4	2	0	0	0	0.72335	1	14473	14473		0.77653	0.14971	1	1299500			57958	11872	42264	42596	56565	56565					-0.0020504659376001655
VGDTVETLMV	10	Unmodified	_VGDTVETLMV_					0	0	0		ENST00000431510.1_1_3:39425059-39430855:+|nuORF	ENST00000431510.1_1_3:39425059-39430855:+|nuORF	ENST00000431510.1_1_3:39425059-39430855:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	355.182847	1062.52671	-0.46635	-0.00016564	-2.7047	-0.00096067	-3.1711	-0.0011263	355.5162479976937	40.918	0.30509	41.692	41.59	41.895	0.77451	-0.10696	0.00024539	NaN	0.77653	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	882190			57959	11872	42264	42596							-0.0020504659376001655
VGDVLPRL	8	Unmodified	_VGDVLPRL_					0	0	0			REV__L1PA5_dup4054|chr5:147183212-147184419:-|1.0898619934076978|0.3037908791454333|1.84|459.0|58|2|anti-sense	REV__L1PA5_dup4054|chr5:147183212-147184419:-|1.0898619934076978|0.3037908791454333|1.84|459.0|58|2|anti-sense	MULTI-MSMS	A375_MHC_IP_R1	1	435.62982177734375	2	434.766178	867.517802	0.22175	9.6409E-05	-0.29798	-0.00012955	-0.076233	-3.3144E-05	434.7660053334428	45.26	0.86004	45.26	44.928	45.789	0					44	16	4	0	0	0	0.75322	1	15722	15722		19.439	3.6708	1	40815000	+		57960	26892	42265	42597	56566	56566					0.07874392622716186
VGDVTGAQAY	10	Unmodified	_VGDVTGAQAY_					0	0	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000185201|ENST00000616316|IFITM2;ENSG00000142089|ENST00000399808|IFITM3;ENST00000527146.1_2_11:308871-309162:+|nuORF	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MULTI-MSMS	A375_MHC_IP_R1	1	491.137451171875	2	490.737814	979.461075	-0.49057	-0.00024074	0.46134	0.0002264	-0.029226	-1.4342E-05	490.7379673717933	41.08	0.70764	41.08	40.762	41.47	0					36	13	4	0	0	0	0.0097732	1	14127	14127		92.653	44.905	1	14692000			57961	5287	42266	42598	56567	56567					-0.02947699724472841
VGDVTGAQAY	10	Unmodified	_VGDVTGAQAY_					0	0	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000185201|ENST00000616316|IFITM2;ENSG00000142089|ENST00000399808|IFITM3;ENST00000527146.1_2_11:308871-309162:+|nuORF	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MULTI-SECPEP	A375_MHC_IP_R2	2	491.1376037597656	2	490.737814	979.461075	-0.62698	-0.00030769	0.43901	0.00021544	-0.18797	-9.2246E-05	490.7380001121285	40.48	0.81252	41.255	40.828	41.641	0.77451					40	15	4	0	0	0	0.021795	1	14930	14930		114.65	49.414	1	15483000			57962	5287	42266	42598	56568	56568					-0.02947699724472841
VGEAADIFL	9	Unmodified	_VGEAADIFL_					0	0	0			REV__EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	REV__EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	934.8877563476562	1	934.488024	933.480748	-0.30317	-0.00028331	0.10885	0.00010172	-0.19432	-0.00018159	934.4883350497702	74.653	0.50959	75.39	75.111	75.621	0.73752					13	9	2	0	0	0	0.24479	1	28381	28381		42.095	7.9072	1	2874300	+		57963	16069	42267	42599	56569	56569					0.011346762862785909
VGEAADIFL	9	Unmodified	_VGEAADIFL_					0	0	0			REV__EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	REV__EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R1	1		1	934.488024	933.480748	-0.024042	-2.2467E-05	0.4393	0.00041052	0.41525	0.00038805	934.4882287818567	75.322	0.35357	75.322	75.16	75.514	0	-0.034085	0.00016156	NaN	42.095	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2040800	+		57964	16069	42267	42599							0.011346762862785909
VGEAQTRIAW	10	Unmodified	_VGEAQTRIAW_					0	0	0		ENSG00000110195|ENST00000393676|FOLR1	ENSG00000110195|ENST00000393676|FOLR1	ENSG00000110195|ENST00000393676|FOLR1	MULTI-SECPEP	A375_MHC_IP_R2	2	377.2792663574219	3	377.536612	1129.58801	0.23133	8.7334E-05	-0.58506	-0.00022088	-0.35373	-0.00013355	377.536453104769	42.112	0.51076	42.884	42.707	43.218	0.7724					14	9	2	0	0	0	0.89761	1	15650	15650		19.626	1.2529	1	3684800			57965	2924	42268	42600	56570	56570					0.028396462205364514
VGEAQTRIAW	10	Unmodified	_VGEAQTRIAW_					0	0	0		ENSG00000110195|ENST00000393676|FOLR1	ENSG00000110195|ENST00000393676|FOLR1	ENSG00000110195|ENST00000393676|FOLR1	MULTI-MATCH	A375_MHC_IP_R1	1		3	377.536612	1129.58801	0.57907	0.00021862	-0.35252	-0.00013309	0.22654	8.5528E-05	377.53648666372055	42.991	0.50928	42.991	42.739	43.249	0	0.05341	0.00011793	NaN	19.626	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2041700			57966	2924	42268	42600							0.028396462205364514
VGECLGSL	8	Unmodified	_VGECLGSL_					0	0	0		nc|ENSG00000165521|Q05BV3|EML5;ENSG00000165521|ENST00000554922|EML5;nc|ENSG00000165521|Q05BV3-4|EML5;nc|ENSG00000165521|Q05BV3-2|EML5	nc|ENSG00000165521|Q05BV3|EML5	nc|ENSG00000165521|Q05BV3|EML5	MSMS	A375_MHC_IP_R1	1	389.2889709472656	2	389.194196	776.37384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.869	1	84.869	84.369	85.369	0								0	0	0	0.16876	1	31095	31095		14.582	4.3983	1				57967	6963	42269	42601	56571	56571					-0.02329197199742339
VGEEEENSRF	10	Unmodified	_VGEEEENSRF_					0	0	0			REV__nc|ENSG00000140853|Q86WI3-4|NLRC5	REV__nc|ENSG00000140853|Q86WI3-4|NLRC5	MSMS	A375_MHC_IP_R2	2	598.2560424804688	2	598.264924	1194.5153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.71	1	131.9	131.4	132.4	0.18953								0	0	0	0.1552	1	51809	51809		3.9444	0.3479	1		+		57968	19233	42270	42602	56572	56572					-0.0741815236358434
VGEEGFHDY	9	Unmodified	_VGEEGFHDY_					0	0	0			REV__ENSG00000163793|ENST00000296097|DNAJC5G	REV__ENSG00000163793|ENST00000296097|DNAJC5G	MSMS	A375_MHC_IP_R2	2	526.6827392578125	2	526.719621	1051.42469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.889	1	46.655	46.155	47.155	0.76519								0	0	0	0.15486	1	17169	17169		8.5933	0	1		+		57969	20412	42271	42603	56573	56573					-0.09896576621167696
VGEELNFNY	9	Unmodified	_VGEELNFNY_					0	0	0			REV__ENSG00000129810|ENST00000412997|SGO1	REV__ENSG00000129810|ENST00000412997|SGO1	MSMS	A375_MHC_IP_R2	2	542.6763916015625	2	542.750921	1083.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.252	1	67.989	67.489	68.489	0.73631								0	0	0	0.15486	1	25476	25476		11.64	0.81637	1		+		57970	18510	42272	42604	56574	56574					-0.051114305530063575
VGEEQALLY	9	Unmodified	_VGEEQALLY_					0	0	0			REV__ENSG00000213462|ENST00000394323|ERV3-1	REV__ENSG00000213462|ENST00000394323|ERV3-1	MULTI-MSMS	A375_MHC_IP_R2	2	511.7059020996094	2	511.263665	1020.51278	-0.67148	-0.00034331	-0.0033443	-1.7098E-06	-0.67483	-0.00034502	511.2635946920874	89.129	0.65293	89.861	89.533	90.186	0.7318					23	12	2	0	0	0	0.27715	1	34034	34034		32.305	5.4218	1	2256100	+		57971	22623	42273	42605	56575	56575					0.0033404396941705272
VGEERDVSL	9	Unmodified	_VGEERDVSL_					0	0	0		GDAP1L1|p.C72G|1|0.31|ENSG00000124194|chr20:44257186-44257186|T/G|missense_variant	GDAP1L1|p.C72G|1|0.31|ENSG00000124194|chr20:44257186-44257186|T/G|missense_variant	GDAP1L1|p.C72G|1|0.31|ENSG00000124194|chr20:44257186-44257186|T/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	502.656005859375	2	502.256371	1002.49819	-0.33203	-0.00016677	-0.48155	-0.00024186	-0.81358	-0.00040863	502.2562356991948	104.53	0.4565	104.53	104.34	104.79	0					17	8	4	0	0	0	0.55818	1	38420	38420		16.942	2.104	1	1035000			57972	14041	42274	42606	56576	56576					-0.0029602817870681974
VGEGGCMG	8	Unmodified	_VGEGGCMG_					0	0	0			REV__nc|ENSG00000100889|Q16822-2|PCK2	REV__nc|ENSG00000100889|Q16822-2|PCK2	MSMS	A375_MHC_IP_R2	2	355.1041259765625	2	355.135824	708.257096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.025	1	89.757	89.257	90.257	0.7318								0	0	0	0.16876	1	33883	33883		0.79363	0	1		+		57973	27146	42275	42607	56577	56577					-0.10870258691136314
VGEGKFRKIL	10	Unmodified	_VGEGKFRKIL_					0	0	0			REV__ENSG00000173406|ENST00000371236|DAB1	REV__ENSG00000173406|ENST00000371236|DAB1	MULTI-MSMS	A375_MHC_IP_R1	1	383.6092224121094	3	382.904636	1145.69208	0.70471	0.00026984	-0.4456	-0.00017062	0.2591	9.9211E-05	382.90454018786073	38.985	0.45765	38.985	38.73	39.187	0					20	8	3	0	0	0	0.70741	1	13277	13277		8.9762	1.0308	1	6665900	+		57974	21220	42276	42608	56578	56578					0.12505973048041596
VGEGPFSNSV	10	Unmodified	_VGEGPFSNSV_					0	0	0		ENSG00000166450|ENST00000389286|PRTG	ENSG00000166450|ENST00000389286|PRTG	ENSG00000166450|ENST00000389286|PRTG	MULTI-MSMS	A375_MHC_IP_R1	1	497.13714599609375	2	496.737814	991.461075	-0.41548	-0.00020638	-0.4377	-0.00021742	-0.85318	-0.00042381	496.7374039386728	91.615	0.80982	91.615	91.249	92.059	0					32	15	3	0	0	0	0.62155	1	33622	33622		19.257	2.1441	1	6484500			57975	7073	42277	42609	56579	56579					-0.03499699724466154
VGEGPFSNSV	10	Unmodified	_VGEGPFSNSV_					0	0	0		ENSG00000166450|ENST00000389286|PRTG	ENSG00000166450|ENST00000389286|PRTG	ENSG00000166450|ENST00000389286|PRTG	MULTI-MSMS	A375_MHC_IP_R2	2	497.1373291015625	2	496.737814	991.461075	-0.38032	-0.00018892	-0.60786	-0.00030195	-0.98818	-0.00049087	496.7373355252115	90.898	0.70926	91.632	91.261	91.97	0.73451					40	13	4	0	0	0	0.62155	1	34535	34535		19.257	2.1441	1	6520700			57976	7073	42277	42609	56580	56580					-0.03499699724466154
VGEISELCPEI	11	Unmodified	_VGEISELCPEI_					0	0	0		ENSG00000204740|ENST00000454679|MALRD1	ENSG00000204740|ENST00000454679|MALRD1	ENSG00000204740|ENST00000454679|MALRD1	MSMS	A375_MHC_IP_R2	2	396.8609619140625	3	396.865407	1187.57439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.353	1	32.071	31.571	32.571	0.71857								0	0	0	0.16166	1	11077	11077		5.0475	0	1				57977	9477	42278	42610	56581	56581					-0.011893923935758721
VGEIVDEIVS	10	Unmodified	_VGEIVDEIVS_					0	0	0			REV__nc|ENSG00000243244|Q9Y6Q2-3|STON1	REV__nc|ENSG00000243244|Q9Y6Q2-3|STON1	MSMS	A375_MHC_IP_R2	2	530.1956176757812	2	530.282054	1058.54956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.118	1	78.861	78.361	79.361	0.74293								0	0	0	0.15207	1	29665	29665		13.906	0	1		+		57978	16545	42279	42611	56582	56582					0.022622957953217337
VGEKLMGV	8	Oxidation (M)	_VGEKLM(Oxidation (M))GV_		VGEKLM(1)GV		VGEKLM(68)GV	0	0	1			REV__nc|ENSG00000173153|P11474-2|ESRRA;REV__nc|ENSG00000196482|P62508-2|ESRRG	REV__nc|ENSG00000196482|P62508-2|ESRRG	MULTI-MSMS	A375_MHC_IP_R1	1	425.1308898925781	2	424.730946	847.447339	0.21532	9.1453E-05	-0.13533	-5.748E-05	0.079988	3.3973E-05	424.7308415751504	48.992	3.0988	48.992	48.325	51.424	0					97	60	2	0	0	0	0.19008	1	17464	17464		68.081	13.307	1	4135700	+		57979	21197;22201	42280	42612	56583	56583		484			0.01751351242751298
VGEKLMGV	8	Oxidation (M)	_VGEKLM(Oxidation (M))GV_		VGEKLM(1)GV		VGEKLM(61)GV	0	0	1			REV__nc|ENSG00000173153|P11474-2|ESRRA;REV__nc|ENSG00000196482|P62508-2|ESRRG	REV__nc|ENSG00000196482|P62508-2|ESRRG	MULTI-SECPEP	A375_MHC_IP_R1	1	424.1578369140625	2	424.730946	847.447339	0.21424	9.0995E-05	-0.055756	-2.3681E-05	0.15848	6.7313E-05	424.7308714124216	45.406	0.96148	45.406	45.03	45.992	0					46	18	4	0	0	0	0.51146	1	15795	15795		61.357	9.0891	1	41910000	+		57980	21197;22201	42280	42612	56584	56584		484			0.01751351242751298
VGEKLMGV	8	Oxidation (M)	_VGEKLM(Oxidation (M))GV_		VGEKLM(1)GV		VGEKLM(68)GV	0	0	1			REV__nc|ENSG00000173153|P11474-2|ESRRA;REV__nc|ENSG00000196482|P62508-2|ESRRG	REV__nc|ENSG00000196482|P62508-2|ESRRG	MULTI-MSMS	A375_MHC_IP_R2	2	425.130859375	2	424.730946	847.447339	-0.33886	-0.00014393	0.14879	6.3196E-05	-0.19007	-8.0729E-05	424.7309383906699	49.193	3.7494	49.95	48.729	52.479	0.75736					101	73	2	0	0	0	0.19008	1	18416	18416		68.081	6.7232	1	2546100	+		57981	21197;22201	42280	42612	56585	56585		484			0.01751351242751298
VGEKLMGV	8	Oxidation (M)	_VGEKLM(Oxidation (M))GV_		VGEKLM(1)GV		VGEKLM(68)GV	0	0	1			REV__nc|ENSG00000173153|P11474-2|ESRRA;REV__nc|ENSG00000196482|P62508-2|ESRRG	REV__nc|ENSG00000196482|P62508-2|ESRRG	MULTI-MSMS	A375_MHC_IP_R2	2	425.130859375	2	424.730946	847.447339	-0.087699	-3.7249E-05	0.27619	0.00011731	0.18849	8.0058E-05	424.73098644898033	69.918	0.71349	70.653	70.335	71.048	0.73421					21	13	2	0	0	0	0.19008	1	26468	26468		68.081	6.7232	1	4538500	+		57982	21197;22201	42280	42612	56586	56586		484			0.01751351242751298
VGEKLMGV	8	Oxidation (M)	_VGEKLM(Oxidation (M))GV_		VGEKLM(1)GV		VGEKLM(59)GV	0	0	1			REV__nc|ENSG00000173153|P11474-2|ESRRA;REV__nc|ENSG00000196482|P62508-2|ESRRG	REV__nc|ENSG00000196482|P62508-2|ESRRG	MULTI-SECPEP	A375_MHC_IP_R2	2	425.1307678222656	2	424.730946	847.447339	-0.33886	-0.00014393	0.14879	6.3196E-05	-0.19007	-8.0729E-05	424.7309383906699	49.193	3.7494	49.95	48.729	52.479	0.75736					101	73	2	0	0	0	0.55873	1	18172	18172		58.679	12.658	1	2546100	+		57983	21197;22201	42280	42612	56587	56587		484			0.01751351242751298
VGEKLMGV	8	Oxidation (M)	_VGEKLM(Oxidation (M))GV_					0	0	1			REV__nc|ENSG00000173153|P11474-2|ESRRA;REV__nc|ENSG00000196482|P62508-2|ESRRG	REV__nc|ENSG00000196482|P62508-2|ESRRG	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	424.730946	847.447339	-0.087699	-3.7249E-05	0.27619	0.00011731	0.18849	8.0058E-05	424.73098644898033	69.918	0.71349	70.653	70.335	71.048	0.73421	-0.08608	-0.00010857	NaN	68.081	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4538500	+		57984	21197;22201	42280	42612				484			0.01751351242751298
VGEKLMGV	8	Unmodified	_VGEKLMGV_					0	0	0			REV__nc|ENSG00000173153|P11474-2|ESRRA;REV__nc|ENSG00000196482|P62508-2|ESRRG	REV__nc|ENSG00000196482|P62508-2|ESRRG	MULTI-MSMS	A375_MHC_IP_R2	2	417.1334533691406	2	416.733489	831.452425	0.03772	1.5719E-05	0.30974	0.00012908	0.34746	0.0001448	416.7335589445894	69.882	0.86517	70.616	70.284	71.149	0.73421					37	16	4	0	0	0	0.16582	1	26435	26435		78.149	7.0158	1	20538000	+		57985	21197;22201	42280	42613	56588	56588					0.029956551053601288
VGEKLMGV	8	Unmodified	_VGEKLMGV_					0	0	0			REV__nc|ENSG00000173153|P11474-2|ESRRA;REV__nc|ENSG00000196482|P62508-2|ESRRG	REV__nc|ENSG00000196482|P62508-2|ESRRG	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	416.733489	831.452425	0.03772	1.5719E-05	0.30974	0.00012908	0.34746	0.0001448	416.7335589445894	69.882	0.86517	70.616	70.284	71.149	0.73421	-0.10424	9.7688E-05	NaN	78.149	37	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20538000	+		57986	21197;22201	42280	42613							0.029956551053601288
VGEKSLTCKKI	11	Unmodified	_VGEKSLTCKKI_					0	0	0		nc|ENSG00000168685|P16871-3|IL7R;nc|ENSG00000168685|P16871-4|IL7R;nc|ENSG00000168685|P16871-2|IL7R;ENSG00000168685|ENST00000303115|IL7R	nc|ENSG00000168685|P16871-3|IL7R	nc|ENSG00000168685|P16871-3|IL7R	MULTI-MSMS	A375_MHC_IP_R2	2	402.6117248535156	3	402.568924	1204.68494	0.13974	5.6255E-05	-1.8014	-0.00072517	-1.6616	-0.00066892	402.90288807382507	46.505	0.25682	47.27	47.108	47.364	0.76518					6	4	2	0	0	0	0.72713	1	17354	17354		11.631	4.2023	1	748570			57987	14756	42281	42614	56589	56589					0.09078872385293835
VGELGSVFKSV	11	Unmodified	_VGELGSVFKSV_					0	0	0			REV__CADPS2|p.V1133G|1|0.19|ENSG00000081803|chr7:122361003-122361003|A/C|missense_variant	REV__CADPS2|p.V1133G|1|0.19|ENSG00000081803|chr7:122361003-122361003|A/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	561.7145385742188	2	561.313689	1120.61282	-0.20077	-0.00011269	0.59109	0.00033179	0.39032	0.00021909	561.314305131958	45.528	0.45284	45.528	45.234	45.687	0					15	8	3	0	0	0	0.94168	1	15961	15961		10.8	4.1691	1	2543200	+		57988	15564	42282	42615	56590	56590					0.05734281303239186
VGEMEEVTG	9	Unmodified	_VGEMEEVTG_					0	0	0			REV__ENSG00000121904|ENST00000373381|CSMD2	REV__ENSG00000121904|ENST00000373381|CSMD2	MSMS	A375_MHC_IP_R2	2	475.6604309082031	2	475.710408	949.406262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.43	1	54.181	53.681	54.681	0.75105								0	0	0	0.15486	1	20162	20162		8.5933	0.68312	1		+		57989	18178	42283	42616	56591	56591					-0.07046454587384687
VGENVFGVTI	10	Unmodified	_VGENVFGVTI_					0	0	0		nc|ENSG00000155657|Q8WZ42-8|TTN	nc|ENSG00000155657|Q8WZ42-8|TTN	nc|ENSG00000155657|Q8WZ42-8|TTN	MSMS	A375_MHC_IP_R1	1	517.6867065429688	2	517.779482	1033.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.978	1	49.978	49.478	50.478	0								0	0	0	0.14601	1	17690	17690		25.399	7.253	1				57990	14694	42284	42617	56592	56592					0.028980367233771176
VGEPAEWAPDM	11	Unmodified	_VGEPAEWAPDM_					0	0	0			REV__nc|ENSG00000100889|Q16822-3|PCK2	REV__nc|ENSG00000100889|Q16822-3|PCK2	MSMS	A375_MHC_IP_R1	1	401.13726806640625	3	401.177985	1200.51212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.99	1	91.99	91.49	92.49	0								0	0	0	0.16334	1	33803	33803		1.3296	0.87513	1		+		57991	17127	42285	42618	56593	56593					-0.08011118741933387
VGETQCLNDY	10	Unmodified	_VGETQCLNDY_					0	0	0			REV__ENSG00000197548|ENST00000693202|ATG7	REV__ENSG00000197548|ENST00000693202|ATG7	MSMS	A375_MHC_IP_R1	1	571.2059326171875	2	571.245146	1140.47574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.682	1	70.682	70.182	71.182	0								0	0	0	0.15372	1	25666	25666		8.7454	0	1		+		57992	22296	42286	42619	56594	56594					-0.08887995638656321
VGETQERE	8	Unmodified	_VGETQERE_					0	0	0		ENST00000518963.5_1_8:18656789-18662365:-|nuORF;ENST00000518303.5_1_8:18658714-18662398:-|nuORF;ENST00000519653.5_1_8:18644335-18666359:-|nuORF;nc|ENSG00000156011|Q9NYI0-3|PSD3;ENSG00000156011|ENST00000327040|PSD3;nc|ENSG00000156011|Q9NYI0|PSD3	ENST00000518963.5_1_8:18656789-18662365:-|nuORF	ENST00000518963.5_1_8:18656789-18662365:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	474.6246337890625	2	474.225071	946.435589	-0.45761	-0.00021701	-0.32908	-0.00015606	-0.78669	-0.00037307	474.2248585765398	57.37	1.1187	57.37	57.007	58.126	0					44	21	4	0	0	0	0.73946	1	20533	20533		23.148	1.4018	1	28243000			57993	6169	42287	42620	56595	56595					-0.039771742468929006
VGETQERE	8	Unmodified	_VGETQERE_					0	0	0		ENST00000518963.5_1_8:18656789-18662365:-|nuORF;ENST00000518303.5_1_8:18658714-18662398:-|nuORF;ENST00000519653.5_1_8:18644335-18666359:-|nuORF;nc|ENSG00000156011|Q9NYI0-3|PSD3;ENSG00000156011|ENST00000327040|PSD3;nc|ENSG00000156011|Q9NYI0|PSD3	ENST00000518963.5_1_8:18656789-18662365:-|nuORF	ENST00000518963.5_1_8:18656789-18662365:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	474.225071	946.435589	-0.95367	-0.00045225	-0.36076	-0.00017108	-1.3144	-0.00062333	474.22486731476647	56.628	0.8171	57.378	57.101	57.918	0.75015	0.0040273	-1.7664E-05	NaN	23.148	40	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31696000			57994	6169	42287	42620							-0.039771742468929006
VGEVASHWSL	10	Unmodified	_VGEVASHWSL_					0	0	0		ENST00000494126.6_1_5:177641847-177659033:-|nuORF	ENST00000494126.6_1_5:177641847-177659033:-|nuORF	ENST00000494126.6_1_5:177641847-177659033:-|nuORF	MSMS	A375_MHC_IP_R1	1	542.7080078125	2	542.774731	1083.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.109	1	99.109	98.609	99.609	0								0	0	0	0.15158	1	36409	36409		14.838	3.198	1				57995	12686	42288	42621	56596	56596					-0.0035173156215932977
VGEVEEGWWE	10	Unmodified	_VGEVEEGWWE_					0	0	0		ENSG00000147010|ENST00000397821|SH3KBP1;nc|ENSG00000147010|Q96B97-2|SH3KBP1	ENSG00000147010|ENST00000397821|SH3KBP1	ENSG00000147010|ENST00000397821|SH3KBP1	MSMS	A375_MHC_IP_R2	2	610.0769653320312	2	610.266936	1218.51932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.78	1	117.44	116.94	117.94	0.65962								0	0	0	0.15417	1	44160	44160		7.2892	1.0834	1				57996	5649	42289	42622	56597	56597					-0.08120062869852518
VGEVNKRRGRR	11	Unmodified	_VGEVNKRRGRR_					0	0	0			REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-MSMS	A375_MHC_IP_R1	1	663.7669677734375	2	663.8949	1325.77525	-0.76579	-0.0005084	0.71906	0.00047738	-0.046729	-3.1023E-05	663.8951849148816	130.79	1.5243	130.79	129.6	131.13	0					86	29	4	0	0	0	0.73698	1	49911	49911		4.897	4.897	1	252700000	+		57997	21445	42290	42623	56598	56598					0.12539102548589653
VGEVNKRRGRR	11	Unmodified	_VGEVNKRRGRR_					0	0	0			REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	663.8949	1325.77525	-0.76579	-0.0005084	0.71906	0.00047738	-0.046729	-3.1023E-05	663.8951849148816	130.79	1.5243	130.79	129.6	131.13	0	-0.016714	-0.00024627	NaN	4.897	86	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252700000	+		57998	21445	42290	42623							0.12539102548589653
VGEVNKRRGRR	11	Unmodified	_VGEVNKRRGRR_					0	0	0			REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	663.8949	1325.77525	-0.85611	-0.00056837	1.0904	0.00072392	0.2343	0.00015555	663.8954669362746	130.61	1.6203	130.83	129.69	131.31	0.2142	0.016714	0.0002468	NaN	4.897	120	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216980000	+		57999	21445	42290	42623							0.12539102548589653
VGFDREGEQ	9	Unmodified	_VGFDREGEQ_					0	0	0			REV__ENST00000492931.5_1_20:43251503-43280248:-|nuORF	REV__ENST00000492931.5_1_20:43251503-43280248:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	519.657470703125	2	518.738345	1035.46214	-0.4772	-0.00024754	-1.665	-0.00086368	-2.1422	-0.0011112	518.7382021997137	34.835	3.549	34.835	32.535	36.084	0					150	69	3	0	0	0	0.67332	1	11113	11113		9.3831	3.6513	1	93373000	+		58000	22232	42291	42624	56599	56599					-0.054174853555878144
VGFDREGEQ	9	Unmodified	_VGFDREGEQ_					0	0	0			REV__ENST00000492931.5_1_20:43251503-43280248:-|nuORF	REV__ENST00000492931.5_1_20:43251503-43280248:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	519.6577758789062	2	518.738345	1035.46214	-1.0195	-0.00052885	-1.4249	-0.00073915	-2.4444	-0.001268	518.7382689220403	34.159	3.4486	34.911	32.975	36.424	0.75225					158	67	4	0	0	0	0.67332	1	11855	11855		9.3831	2.66	1	66591000	+		58001	22232	42291	42624	56600	56600					-0.054174853555878144
VGFFIHRRR	9	Unmodified	_VGFFIHRRR_					0	0	0		ENSG00000142627|ENST00000358432|EPHA2	ENSG00000142627|ENST00000358432|EPHA2	ENSG00000142627|ENST00000358432|EPHA2	MULTI-MSMS	A375_MHC_IP_R1	1	1187.3455810546875	1	1187.69086	1186.68358	-0.35996	-0.00042752	1.5767	0.0018727	1.2168	0.0014451	1187.6936955111485	140.06	0.40938	140.06	139.88	140.29	0					10	7	2	0	0	0	0.77154	1	53748	53748		0.6015	0	1	905450			58002	5319	42292	42625	56601	56601					0.09770463922063755
VGFFTKKVSY	10	Unmodified	_VGFFTKKVSY_					0	0	0			REV__TYRP1|p.L201F|1|0.12|ENSG00000107165|chr9:12695730-12695730|C/T|missense_variant	REV__TYRP1|p.L201F|1|0.12|ENSG00000107165|chr9:12695730-12695730|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	391.8420104980469	3	392.553492	1174.63865	0.34631	0.00013594	-3.4022	-0.0013355	-3.0559	-0.0011996	392.8867155650985	21.44	0.20394	21.44	21.301	21.505	0					6	3	2	0	0	0	0.93005	1	5586	5586		4.1895	0	1	1130700	+		58003	28937	42293	42626	56602	56602					0.05831175545517908
VGFIHSIIQV	10	Unmodified	_VGFIHSIIQV_					0	0	0		OR4M1|p.G151V|1|0.15|ENSG00000176299|chr14:19780774-19780774|G/T|missense_variant	OR4M1|p.G151V|1|0.15|ENSG00000176299|chr14:19780774-19780774|G/T|missense_variant	OR4M1|p.G151V|1|0.15|ENSG00000176299|chr14:19780774-19780774|G/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	371.95599365234375	3	371.553603	1111.63898	0.18436	6.8499E-05	4.2507	0.0015793	4.435	0.0016478	371.55479168379384	24.523	0.40334	24.523	24.194	24.597	0					11	7	2	0	0	0	0.53946	1	7017	7017		16.566	7.0219	1	9077300			58004	15080	42294	42627	56603	56603					0.08762595265375239
VGFIHSIIQV	10	Unmodified	_VGFIHSIIQV_					0	0	0		OR4M1|p.G151V|1|0.15|ENSG00000176299|chr14:19780774-19780774|G/T|missense_variant	OR4M1|p.G151V|1|0.15|ENSG00000176299|chr14:19780774-19780774|G/T|missense_variant	OR4M1|p.G151V|1|0.15|ENSG00000176299|chr14:19780774-19780774|G/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	371.553603	1111.63898	0.16866	6.2666E-05	5.9868	0.0022244	6.1555	0.0022871	371.55571313871974	23.773	0.20258	24.404	24.283	24.485	0.63014	-0.059583	3.2017E-05	NaN	16.566	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4160400			58005	15080	42294	42627							0.08762595265375239
VGFKWIQYKVD	11	Unmodified	_VGFKWIQYKVD_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-MSMS	A375_MHC_IP_R1	1	461.61212158203125	3	461.587084	1381.73942	-0.20339	-9.3883E-05	-0.8927	-0.00041206	-1.0961	-0.00050594	461.58676686288885	23.098	0.66013	23.098	22.924	23.584	0					24	12	4	0	0	0	0.73698	1	6369	6369		2.2527	1.0379	1	15314000	+		58006	22171	42295	42628	56604	56604					0.06382207528349682
VGFLGRLLPD	10	Unmodified	_VGFLGRLLPD_					0	0	0			REV__PXDN|p.D1187Efs*3|1|0.08|ENSG00000130508|chr2:1648215-1648219|TCAGG/-|frameshift_variant	REV__PXDN|p.D1187Efs*3|1|0.08|ENSG00000130508|chr2:1648215-1648219|TCAGG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	1087.697998046875	1	1086.63061	1085.62333	0.10302	0.00011194	2.6903	0.0029234	2.7934	0.0030354	1086.6357041260458	123.96	0.65824	124.29	123.79	124.44	0.32969					19	12	2	0	0	0	0.71361	1	47807	47807		6.2058	0.44535	1	23922000	+		58007	18543	42296	42629	56605	56605					0.08394308748324875
VGFLGRLV	8	Unmodified	_VGFLGRLV_					0	0	0			REV__ENSG00000147485|ENST00000356297|PXDNL	REV__ENSG00000147485|ENST00000356297|PXDNL	MULTI-SECPEP	A375_MHC_IP_R2	2	431.171142578125	2	430.771263	859.527973	-0.22526	-9.7034E-05	0.46255	0.00019925	0.23729	0.00010222	430.7712720299831	73.054	0.81512	73.79	73.53	74.345	0.73541					25	15	3	0	0	0	0.88799	1	27725	27725		20.871	0	1	1997300	+		58008	19591	42297	42630	56606	56606					0.09259000347947222
VGFLVKLESSP	11	Unmodified	_VGFLVKLESSP_					0	0	0		ENST00000535516.5_1_13:111303047-111303206:-|nuORF	ENST00000535516.5_1_13:111303047-111303206:-|nuORF	ENST00000535516.5_1_13:111303047-111303206:-|nuORF	MSMS	A375_MHC_IP_R2	2	392.62786865234375	3	392.560535	1174.65977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.854	1	58.603	58.103	59.103	0.74894								0	0	0	0.1623	1	21881	21881		5.4027	0	1				58009	13228	42298	42631	56607	56607					0.07943140854376907
VGFQVQLDL	9	Unmodified	_VGFQVQLDL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	A375_MHC_IP_R2	2	509.34710693359375	2	509.782025	1017.5495	-0.75674	-0.00038577	0.92737	0.00047276	0.17062	8.698E-05	510.2844670563825	77.648	0.40808	78.391	78.216	78.624	0.74293					12	7	2	0	0	0	0.60012	1	29514	29514		18.135	8.7519	1	1891300			58010	7864	42299	42632	56608	56608					0.04142340586008686
VGFRNVDTIT	10	Unmodified	_VGFRNVDTIT_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R1	1	375.58929443359375	3	374.536501	1120.58767	0.31749	0.00011891	-0.108	-4.0448E-05	0.2095	7.8464E-05	374.5364736510869	31.895	1.2206	31.895	31.565	32.785	0					76	23	5	0	0	0	0.70174	1	10430	10430		11.518	1.2026	1	344880000	+		58011	19932	42300	42633	56609	56609					0.03220226500661738
VGFRNVDTIT	10	Unmodified	_VGFRNVDTIT_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R2	2	375.5892028808594	3	374.536501	1120.58767	0.29908	0.00011202	-0.361	-0.00013521	-0.061922	-2.3192E-05	374.5363502858005	31.179	1.1689	31.897	31.567	32.736	0.71857					73	22	5	0	0	0	0.70174	1	11179	11179		11.518	1.3673	1	297250000	+		58012	19932	42300	42633	56610	56610					0.03220226500661738
VGFRTRQIW	9	Unmodified	_VGFRTRQIW_					0	0	0		ENST00000379103.7_1_17:26206084-26206336:-|nuORF	ENST00000379103.7_1_17:26206084-26206336:-|nuORF	ENST00000379103.7_1_17:26206084-26206336:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	387.62384033203125	3	388.220847	1161.64071	-0.49718	-0.00019301	-0.87448	-0.00033949	-1.3717	-0.0005325	388.5550207265504	56.351	0.51036	57.102	56.898	57.408	0.75015					11	9	2	0	0	0	0.75466	1	21262	21262		4.897	0	1	495440			58013	11325	42301	42634	56611	56611					0.06635649073973582
VGFVEIIVLL	10	Unmodified	_VGFVEIIVLL_					0	0	0			REV__PLCZ1|p.S506L|1|0.25|ENSG00000139151|chr12:18688163-18688163|G/A|missense_variant	REV__PLCZ1|p.S506L|1|0.25|ENSG00000139151|chr12:18688163-18688163|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	367.49652099609375	3	367.902121	1100.68453	0.25542	9.397E-05	-2.2775	-0.00083791	-2.0221	-0.00074394	367.9012375757672	64.493	0.35799	65.234	65.054	65.412	0.74022					9	6	2	0	0	0	0.94859	1	24512	24512		0.77653	0	1	669660	+		58014	27799	42302	42635	56612	56612					0.1382182072775322
VGFVVLVTWT	10	Unmodified	_VGFVVLVTWT_					0	0	0			REV__ENST00000522060.1_1_8:144090549-144099792:-|nuORF	REV__ENST00000522060.1_1_8:144090549-144099792:-|nuORF	MSMS	A375_MHC_IP_R1	1	374.2729797363281	3	374.21822	1119.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.159	1	53.159	52.659	53.659	0								0	0	0	0.15438	1	18941	18941		6.6304	0	1		+		58015	25673	42303	42636	56613	56613					0.07780077033839916
VGFYEVRGE	9	Unmodified	_VGFYEVRGE_					0	0	0		tr|U7STF1|U7STF1_FUSNUExodeoxyribonuclease7largesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=xseAPE=3SV=1	tr|U7STF1|U7STF1_FUSNUExodeoxyribonuclease7largesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=xseAPE=3SV=1	tr|U7STF1|U7STF1_FUSNUExodeoxyribonuclease7largesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=xseAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	352.9692077636719	3	352.510063	1054.50836	-0.43459	-0.0001532	0.022079	7.7831E-06	-0.41251	-0.00014542	352.50984284489437	28.154	0.25366	28.833	28.655	28.909	0.67857					6	4	2	0	0	0	0.75466	1	9635	9635		4.897	2.3985	1	1227100			58016	29686	42304	42637	56614	56614					-0.016714204534764576
VGGAAAAAFN	10	Unmodified	_VGGAAAAAFN_					0	0	0			REV__LRFN2|p.D728N|1|0.21|ENSG00000156564|chr6:40392131-40392131|C/T|missense_variant	REV__LRFN2|p.D728N|1|0.21|ENSG00000156564|chr6:40392131-40392131|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	425.1167297363281	2	424.716685	847.418816	-0.093534	-3.9726E-05	-0.14478	-6.149E-05	-0.23831	-0.00010122	424.7166331545689	57.474	0.56045	57.474	57.159	57.72	0					13	10	2	0	0	0	0.4661	1	20662	20662		30.225	5.5509	1	1179400	+		58017	26940	42305	42638	56615	56615					-0.01099630342207547
VGGAAAAAFN	10	Unmodified	_VGGAAAAAFN_					0	0	0			REV__LRFN2|p.D728N|1|0.21|ENSG00000156564|chr6:40392131-40392131|C/T|missense_variant	REV__LRFN2|p.D728N|1|0.21|ENSG00000156564|chr6:40392131-40392131|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	425.1164855957031	2	424.716685	847.418816	-0.56441	-0.00023971	-0.65786	-0.00027941	-1.2223	-0.00051912	424.7167297289591	56.683	0.81484	57.434	56.847	57.662	0.75015					20	15	2	0	0	0	0.36842	1	21442	21442		36.044	5.8194	1	2272700	+		58018	26940	42305	42638	56616	56616					-0.01099630342207547
VGGAAAAAFN	10	Unmodified	_VGGAAAAAFN_					0	0	0			REV__LRFN2|p.D728N|1|0.21|ENSG00000156564|chr6:40392131-40392131|C/T|missense_variant	REV__LRFN2|p.D728N|1|0.21|ENSG00000156564|chr6:40392131-40392131|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	424.716685	847.418816	-0.093534	-3.9726E-05	-0.14478	-6.149E-05	-0.23831	-0.00010122	424.7166331545689	57.474	0.56045	57.474	57.159	57.72	0	0.020164	3.8867E-05	NaN	36.044	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1179400	+		58019	26940	42305	42638							-0.01099630342207547
VGGAAAAAFN	10	Unmodified	_VGGAAAAAFN_					0	0	0			REV__LRFN2|p.D728N|1|0.21|ENSG00000156564|chr6:40392131-40392131|C/T|missense_variant	REV__LRFN2|p.D728N|1|0.21|ENSG00000156564|chr6:40392131-40392131|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	424.716685	847.418816	-0.56441	-0.00023971	-0.65786	-0.00027941	-1.2223	-0.00051912	424.7167297289591	56.683	0.81484	57.434	56.847	57.662	0.75015	-0.020164	-0.00039696	NaN	36.044	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2272700	+		58020	26940	42305	42638							-0.01099630342207547
VGGALNNE	8	Unmodified	_VGGALNNE_					0	0	0			REV__nc|ENSG00000140853|Q86WI3-4|NLRC5	REV__nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-SECPEP	A375_MHC_IP_R1	1	773.7783203125	1	773.378808	772.371532	-0.82601	-0.00063882	-0.1157	-8.9484E-05	-0.94172	-0.00072831	773.3784726288044	146.91	0.12775	146.91	146.84	146.97	0					33	11	4	0	0	0	0.972	1	56170	56170		0.79363	0	1	3400100	+		58021	19233	42306	42639	56617	56617					-0.023759096131925617
VGGALNNE	8	Unmodified	_VGGALNNE_					0	0	0			REV__nc|ENSG00000140853|Q86WI3-4|NLRC5	REV__nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-SECPEP	A375_MHC_IP_R2	2	773.7778930664062	1	773.378808	772.371532	-0.75226	-0.00058178	0.6724	0.00052002	-0.079855	-6.1758E-05	773.3790876567529	146.92	0.14371	146.94	146.88	147.02	0.019913					41	16	4	0	0	0	0.972	1	57186	57186		0.79363	0	1	2216800	+		58022	19233	42306	42639	56618	56618					-0.023759096131925617
VGGAPTPK	8	Unmodified	_VGGAPTPK_					0	0	0		nc|ENSG00000108798|Q9P2A4-2|ABI3;ENSG00000108798|ENST00000225941|ABI3	nc|ENSG00000108798|Q9P2A4-2|ABI3	nc|ENSG00000108798|Q9P2A4-2|ABI3	MULTI-SECPEP	A375_MHC_IP_R1	1	726.8402099609375	1	726.414465	725.407189	-0.2056	-0.00014935	-3.6445	-0.0026475	-3.8502	-0.0027968	726.4093386092093	126.55	0.20096	126.55	126.46	126.66	0					5	3	2	0	0	0	0.93416	1	48384	48384		5.2307	2.6532	1	2773500			58023	2838	42307	42640	56619	56619					0.03350172634463888
VGGCSPAG	8	Unmodified	_VGGCSPAG_					0	0	0			REV__ENST00000534191.1_1_11:828562-829184:+|nuORF	REV__ENST00000534191.1_1_11:828562-829184:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	647.7727661132812	1	647.281737	646.27446	-0.60358	-0.00039068	1.2407	0.00080306	0.63709	0.00041238	647.2779302372874	133.2	0.55829	133.37	133.04	133.6	0.16487					14	10	2	0	0	0	0.972	1	52360	52360		0	0	1	1555300	+		58024	25841	42308	42641	56620	56620					-0.06282595093830423
VGGDVRILNP	10	Unmodified	_VGGDVRILNP_					0	0	0		ENSG00000105509|ENST00000540069|HAS1;nc|ENSG00000105509|Q92839|HAS1	ENSG00000105509|ENST00000540069|HAS1	ENSG00000105509|ENST00000540069|HAS1	MULTI-SECPEP	A375_MHC_IP_R2	2	520.6319580078125	2	520.298373	1038.58219	-0.83437	-0.00043412	-0.16886	-8.7859E-05	-1.0032	-0.00052198	520.2983216895441	39.114	0.46	39.888	39.658	40.118	0.77451					13	8	2	0	0	0	0.87163	1	14453	14453		13.906	0	1	4812500			58025	2613	42309	42642	56621	56621					0.064445477088384
VGGFPPGL	8	Unmodified	_VGGFPPGL_					0	0	0		nc|ENSG00000242114|Q9UDX5-2|MTFP1;ENST00000439023.3_3_22:30806632-30824658:+|nuORF;ENST00000454552.5_3_22:30812353-30824658:+|nuORF	nc|ENSG00000242114|Q9UDX5-2|MTFP1	nc|ENSG00000242114|Q9UDX5-2|MTFP1	MULTI-SECPEP	A375_MHC_IP_R1	1	372.60784912109375	2	372.207964	742.401375	0.48059	0.00017888	-0.20892	-7.7762E-05	0.27167	0.00010112	372.20781480450984	78.429	1.0117	78.429	78.099	79.111	0					27	19	2	0	0	0	0.972	1	28647	28647		0.79363	0	1	3070800			58026	14914	42310	42643	56622	56622					0.019870741228032784
VGGGAFGP	8	Unmodified	_VGGGAFGP_					0	0	0			REV__ENST00000258052.7_1_6:109762215-109762762:+|nuORF	REV__ENST00000258052.7_1_6:109762215-109762762:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	662.1258544921875	1	661.330402	660.323125	-0.69302	-0.00045831	2.9982	0.0019828	2.3052	0.0015245	661.3291961900254	80.583	0.15081	80.583	80.492	80.642	0					4	2	2	0	0	0	0.972	1	29422	29422		2.8892	0	1	795150	+		58027	23165	42311	42644	56623	56623					-0.020623584624217983
VGGGEGRGGNE	11	Unmodified	_VGGGEGRGGNE_					0	0	0		ENST00000395131.5_1_6:33258626-33258683:+|nuORF	ENST00000395131.5_1_6:33258626-33258683:+|nuORF	ENST00000395131.5_1_6:33258626-33258683:+|nuORF	MSMS	A375_MHC_IP_R2	2	494.6660461425781	2	494.725769	987.436986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.432	1	79.177	78.677	79.677	0.74474								0	0	0	0.16124	1	29784	29784		12.241	0.60036	1				58028	11465	42312	42645	56624	56624					-0.05723540158135165
VGGGGAPSDS	10	Unmodified	_VGGGGAPSDS_					0	0	0		ENST00000317204.10_1_11:1297899-1298181:-|nuORF	ENST00000317204.10_1_11:1297899-1298181:-|nuORF	ENST00000317204.10_1_11:1297899-1298181:-|nuORF	MSMS	A375_MHC_IP_R2	2	402.5795593261719	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.615	1	22.235	21.735	22.735	0.61932								0	0	0	0.1552	1	6822	6822		3.9444	0	1				58029	10666	42313	42646	56625	56625					-0.06336803855469952
VGGGGFVP	8	Unmodified	_VGGGGFVP_					0	0	0		ENST00000344697.2_1_3:43122946-43147521:-|nuORF	ENST00000344697.2_1_3:43122946-43147521:-|nuORF	ENST00000344697.2_1_3:43122946-43147521:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	689.7620849609375	1	689.361702	688.354425	-0.60712	-0.00041852	0.53843	0.00037118	-0.068682	-4.7347E-05	689.3620258466973	63.896	1.219	64.636	63.835	65.054	0.74022					35	23	2	0	0	0	0.77781	1	24315	24315		2.8892	2.0956	1	2062900			58030	10897	42314	42647	56626	56626					-0.0022178542833444226
VGGGGFVP	8	Unmodified	_VGGGGFVP_					0	0	0		ENST00000344697.2_1_3:43122946-43147521:-|nuORF	ENST00000344697.2_1_3:43122946-43147521:-|nuORF	ENST00000344697.2_1_3:43122946-43147521:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	689.361702	688.354425	-0.66732	-0.00046002	1.3742	0.0009473	0.70686	0.00048728	689.3622941785108	64.725	1.1679	64.725	63.887	65.055	0	0.044833	0.00027294	NaN	2.8892	29	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3444000			58031	10897	42314	42647							-0.0022178542833444226
VGGGGGGA	8	Unmodified	_VGGGGGGA_					0	0	0		ENSG00000113389|ENST00000265074|NPR3;nc|ENSG00000113389|P17342-2|NPR3	ENSG00000113389|ENST00000265074|NPR3	ENSG00000113389|ENST00000265074|NPR3	MULTI-MSMS	A375_MHC_IP_R2	2	531.2468872070312	1	531.252151	530.244875	-0.65525	-0.0003481	-0.22733	-0.00012077	-0.88258	-0.00046887	531.2494827034999	82.767	0.30107	83.51	83.297	83.598	0.74293					6	5	2	0	0	0	0.77839	1	31455	31455		0.79363	0	1	613930			58032	3147	42315	42648	56627	56627					-0.039037910476736215
VGGGGGGG	8	Unmodified	_VGGGGGGG_					0	0	0		ENST00000352800.9_1_3:176782780-176915010:-|nuORF;ENST00000307790.7_3_22:30221719-30234222:-|nuORF;ENST00000606082.5_1_2:54198066-54200871:+|nuORF	REV__ENSG00000165655|ENST00000372524|ZNF503;REV__ENSG00000181588|ENST00000402693|MEX3D;REV__ENSG00000180828|ENST00000321870|BHLHE22;REV__ENST00000368218.8_2_1:156698377-156698662:+|nuORF;REV__nc|ENSG00000186174|Q86UU0-3|BCL9L;REV__ENSG00000162613|ENST00000370768|FUBP1	REV__ENSG00000181588|ENST00000402693|MEX3D	MULTI-MSMS	A375_MHC_IP_R2	2	518.1893920898438	1	517.236501	516.229225	-0.80019	-0.00041389	-2.176	-0.0011255	-2.9762	-0.0015394	517.2400179152736	81.843	0.25315	82.586	82.431	82.684	0.74293					6	4	2	0	0	0	0.77839	1	31061	31061		0.79363	0	1	456890			58033	21658;20606;21623;23989;21952;20274	42316	42649	56628	56628					-0.04824077564705931
VGGGGGQD	8	Unmodified	_VGGGGGQD_					0	0	0		nc|ENSG00000152782|Q8TE04|PANK1	nc|ENSG00000152782|Q8TE04|PANK1	nc|ENSG00000152782|Q8TE04|PANK1	MULTI-SECPEP	A375_MHC_IP_R2	2	645.4871826171875	1	646.279094	645.271818	-0.48368	-0.00031259	-0.62685	-0.00040512	-1.1105	-0.00071771	646.2755507296288	137.82	1.0164	137.91	137.45	138.47	0.083969					34	19	3	0	0	0	0.972	1	54072	54072		0.79363	0	1	817400			58034	14688	42317	42650	56629	56629					-0.06500727227148673
VGGGGVRL	8	Unmodified	_VGGGGVRL_					0	0	0			REV__ENST00000536878.6_2_19:58095623-58095668:+|nuORF	REV__ENST00000536878.6_2_19:58095623-58095668:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	714.8262329101562	1	714.425699	713.418422	-0.9386	-0.00067056	1.5529	0.0011095	0.61433	0.0004389	714.4265392603753	143.27	0.60272	143.27	142.89	143.49	0					16	11	2	0	0	0	0.972	1	54998	54998		0.79363	0	1	10107000	+		58035	25916	42318	42651	56630	56630					0.05024994728614729
VGGGQAGF	8	Unmodified	_VGGGQAGF_					0	0	0		ENST00000397195.9_1_17:2588401-2588581:+|nuORF	ENST00000397195.9_1_17:2588401-2588581:+|nuORF	ENST00000397195.9_1_17:2588401-2588581:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	692.6729125976562	1	692.336215	691.328939	-0.53412	-0.00036979	-0.95596	-0.00066184	-1.4901	-0.0010316	692.3363135655192	97.434	0.3023	97.434	97.288	97.59	0					7	5	2	0	0	0	0.972	1	35746	35746		0.79363	0	1	834170			58036	11501	42319	42652	56631	56631					-0.02907259950768548
VGGGSESRSL	10	Unmodified	_VGGGSESRSL_					0	0	0		nc|ENSG00000089639|Q9P107-2|GMIP;ENSG00000089639|ENST00000203556|GMIP	nc|ENSG00000089639|Q9P107-2|GMIP	nc|ENSG00000089639|Q9P107-2|GMIP	MSMS	A375_MHC_IP_R1	1	474.67962646484375	2	474.740888	947.467223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.282	1	51.282	50.782	51.782	0								0	0	0	0.15047	1	18199	18199		16.942	0	1				58037	1930	42320	42653	56632	56632					-0.00861181492950891
VGGGVLKKKKS	11	Unmodified	_VGGGVLKKKKS_					0	0	0		TLCD1|p.T141Kfs*27|1|0.17|ENSG00000160606|chr17:28724832-28724833|-/AATTTACTCTTTTTTTTTT|frameshift_variant	TLCD1|p.T141Kfs*27|1|0.17|ENSG00000160606|chr17:28724832-28724833|-/AATTTACTCTTTTTTTTTT|frameshift_variant	TLCD1|p.T141Kfs*27|1|0.17|ENSG00000160606|chr17:28724832-28724833|-/AATTTACTCTTTTTTTTTT|frameshift_variant	MSMS	A375_MHC_IP_R2	2	550.6166381835938	2	550.861141	1099.70773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.256	1	21.875	21.375	22.375	0.61932								0	0	0	0.16353	1	6678	6678		0.35063	0	1				58038	29348	42321	42654	56633	56633					0.1618625956507458
VGGICLWLAVY	11	Unmodified	_VGGICLWLAVY_					0	0	0		ENSG00000102743|ENST00000338625|SLC25A15	ENSG00000102743|ENST00000338625|SLC25A15	ENSG00000102743|ENST00000338625|SLC25A15	MSMS	A375_MHC_IP_R2	2	597.2251586914062	2	597.323002	1192.63145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.3	1	132.49	131.99	132.99	0.18953								0	0	0	0.1623	1	52045	52045		6.7232	0.51738	1				58039	2389	42322	42655	56634	56634					0.04284119673434361
VGGIPHGILNE	11	Unmodified	_VGGIPHGILNE_					0	0	0			REV__tr|U7SRE7|U7SRE7_FUSNUYbaK/aminoacyl-tRNAsynthetase-associateddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01574PE=4SV=1	REV__tr|U7SRE7|U7SRE7_FUSNUYbaK/aminoacyl-tRNAsynthetase-associateddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01574PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	369.5151672363281	3	369.204862	1104.59276	0.38088	0.00014062	0.027677	1.0218E-05	0.40856	0.00015084	369.20482663435786	35.076	1.0714	35.076	34.861	35.932	0					41	20	4	0	0	0	0.73332	1	11787	11787		4.7159	2.6299	1	16736000	+		58040	28395	42323	42656	56635	56635					0.04464530363270569
VGGKEAGTES	10	Unmodified	_VGGKEAGTES_					0	0	0		ENSG00000100354|ENST00000454349|TNRC6B;nc|ENSG00000100354|Q9UPQ9-1|TNRC6B;nc|ENSG00000100354|Q9UPQ9-2|TNRC6B	ENSG00000100354|ENST00000454349|TNRC6B	ENSG00000100354|ENST00000454349|TNRC6B	MSMS	A375_MHC_IP_R1	1	467.6739807128906	2	467.727446	933.44034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.717	1	62.717	62.217	63.217	0								0	0	0	0.15158	1	22658	22658		14.838	1.3304	1				58041	2167	42324	42657	56636	56636					-0.02904290104129359
VGGKNTVVAI	10	Unmodified	_VGGKNTVVAI_					0	0	0		ENSG00000144815|ENST00000273347|NXPE3	ENSG00000144815|ENST00000273347|NXPE3	ENSG00000144815|ENST00000273347|NXPE3	MULTI-SECPEP	A375_MHC_IP_R1	1	479.690185546875	2	479.290017	956.565481	-0.42467	-0.00020354	0.87602	0.00041987	0.45135	0.00021633	479.2904291278403	60.031	0.56004	60.031	59.803	60.363	0					15	10	2	0	0	0	0.73104	1	21619	21619		24.991	4.5764	1	2877400			58042	5516	42325	42658	56637	56637					0.0854604682289164
VGGKNTVVAI	10	Unmodified	_VGGKNTVVAI_					0	0	0		ENSG00000144815|ENST00000273347|NXPE3	ENSG00000144815|ENST00000273347|NXPE3	ENSG00000144815|ENST00000273347|NXPE3	MULTI-MSMS	A375_MHC_IP_R2	2	479.68939208984375	2	479.290017	956.565481	-0.95106	-0.00045583	-0.31401	-0.0001505	-1.2651	-0.00060634	479.2898142518137	59.072	0.50732	59.819	59.54	60.047	0.74714					20	9	3	0	0	0	0.62015	1	22368	22368		19.362	2.249	1	2492500			58043	5516	42325	42658	56638	56638					0.0854604682289164
VGGLAWGG	8	Unmodified	_VGGLAWGG_					0	0	0		ENST00000557810.5_1_14:24584043-24584304:+|nuORF	ENST00000557810.5_1_14:24584043-24584304:+|nuORF	ENST00000557810.5_1_14:24584043-24584304:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	357.95245361328125	2	358.689939	715.365324	-0.23634	-8.4772E-05	0.41665	0.00014945	0.18032	6.4678E-05	358.69002797842154	31.296	0.40972	32.015	31.77	32.18	0.71857					10	7	2	0	0	0	0.972	1	10994	10994		2.8892	0.31174	1	1408300			58044	13458	42326	42659	56639	56639					-0.0037438305404293715
VGGLIWVG	8	Unmodified	_VGGLIWVG_					0	0	0		ENST00000269886.7_1_19:4361390-4361432:-|nuORF	ENST00000269886.7_1_19:4361390-4361432:-|nuORF	ENST00000269886.7_1_19:4361390-4361432:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	401.13726806640625	2	400.736889	799.459225	-0.18781	-7.5263E-05	0.69193	0.00027728	0.50412	0.00020202	400.7370928710577	92.081	0.55563	92.081	91.807	92.362	0					22	10	3	0	0	0	0.972	1	33803	33803		2.8892	0	1	4785000			58045	10373	42327	42660	56640	56640					0.051473360482305
VGGLIWVG	8	Unmodified	_VGGLIWVG_					0	0	0		ENST00000269886.7_1_19:4361390-4361432:-|nuORF	ENST00000269886.7_1_19:4361390-4361432:-|nuORF	ENST00000269886.7_1_19:4361390-4361432:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	400.1387634277344	2	400.736889	799.459225	-0.23029	-9.2286E-05	0.98899	0.00039632	0.7587	0.00030404	400.73719262542244	96.604	0.71063	96.604	96.376	97.086	0					26	13	3	0	0	0	0.972	1	35660	35660		0.79363	0	1	3651400			58046	10373	42327	42660	56641	56641					0.051473360482305
VGGLLRNV	8	Unmodified	_VGGLLRNV_					0	0	0		ENSG00000172888|ENST00000339296|ZNF621;nc|ENSG00000172888|Q6ZSS3-2|ZNF621	ENSG00000172888|ENST00000339296|ZNF621	ENSG00000172888|ENST00000339296|ZNF621	MULTI-SECPEP	A375_MHC_IP_R1	1	414.65863037109375	2	414.25852	826.502486	0.5739	0.00023774	-0.14864	-6.1574E-05	0.42526	0.00017617	414.2583562352616	44.371	0.30648	44.371	44.165	44.471	0					9	5	2	0	0	0	0.34394	1	15477	15477		50.855	0	1	1709800			58047	7741	42328	42661	56642	56642					0.08229525825515793
VGGLLRNV	8	Unmodified	_VGGLLRNV_					0	0	0		ENSG00000172888|ENST00000339296|ZNF621;nc|ENSG00000172888|Q6ZSS3-2|ZNF621	ENSG00000172888|ENST00000339296|ZNF621	ENSG00000172888|ENST00000339296|ZNF621	MULTI-MATCH	A375_MHC_IP_R2	2		2	414.25852	826.502486	0.15251	6.3181E-05	-0.099463	-4.1204E-05	0.053051	2.1977E-05	414.25836009181705	43.352	0.40612	44.125	43.977	44.383	0.7724	-0.12336	2.4553E-05	NaN	50.855	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1717100			58048	7741	42328	42661							0.08229525825515793
VGGLLRRP	8	Unmodified	_VGGLLRRP_					0	0	0			REV__ENST00000296933.10_1_5:171433486-171433849:-|nuORF	REV__ENST00000296933.10_1_5:171433486-171433849:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	434.67950439453125	2	434.279786	866.54502	-0.40029	-0.00017384	0.073628	3.1975E-05	-0.32666	-0.00014186	434.2797492744508	25.892	0.30237	25.892	25.765	26.068	0					7	5	2	0	0	0	0.972	1	7669	7669		5.7604	0.52976	1	4156900	+		58049	23394	42329	42662	56643	56643					0.10640920953744626
VGGLPPKL	8	Unmodified	_VGGLPPKL_					0	0	0		NRXN1|p.E161K|1|0.16|ENSG00000179915|chr2:51027793-51027793|C/T|missense_variant	NRXN1|p.E161K|1|0.16|ENSG00000179915|chr2:51027793-51027793|C/T|missense_variant	NRXN1|p.E161K|1|0.16|ENSG00000179915|chr2:51027793-51027793|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	391.15264892578125	2	390.752539	779.490525	0.25489	9.9597E-05	-0.16325	-6.3791E-05	0.091634	3.5806E-05	390.7524478822342	88.485	0.71349	88.485	88.205	88.919	0					21	13	2	0	0	0	0.972	1	32460	32460		2.5775	0	1	6811100			58050	15030	42330	42663	56644	56644					0.09195909082313847
VGGLRHASA	9	Unmodified	_VGGLRHASA_					0	0	0		ENST00000504731.1_1_4:189659580-189660645:+|nuORF	ENST00000504731.1_1_4:189659580-189660645:+|nuORF	ENST00000504731.1_1_4:189659580-189660645:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	434.6435241699219	2	434.243401	866.472249	0.30626	0.00013299	-0.07701	-3.3441E-05	0.22925	9.9549E-05	434.24328233893596	114.34	3.3501	114.34	112.89	116.24	0					136	65	3	0	0	0	0.75251	1	41655	41655		2.3027	0	1	16259000			58051	12826	42331	42664	56645	56645					0.0336716716032015
VGGLSPDPGA	10	Unmodified	_VGGLSPDPGA_					0	0	0			REV__ENST00000572285.5_1_17:7133284-7137536:-|nuORF	REV__ENST00000572285.5_1_17:7133284-7137536:-|nuORF	MSMS	A375_MHC_IP_R1	1	435.2823486328125	2	435.2218	868.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.934	1	87.934	87.434	88.434	0								0	0	0	0.15332	1	32274	32274		10.074	1.4806	1		+		58052	26285	42332	42665	56646	56646					-0.01043067407624676
VGGLTFVTW	9	Unmodified	_VGGLTFVTW_					0	0	0			REV__nc|ENSG00000141627|Q7RTS9-2|DYM	REV__nc|ENSG00000141627|Q7RTS9-2|DYM	MSMS	A375_MHC_IP_R2	2	490.2135925292969	2	490.26601	978.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.259	1	51.013	50.513	51.513	0.75406								0	0	0	0.15486	1	18901	18901		12.532	0	1		+		58053	19282	42333	42666	56647	56647					0.027349729028628644
VGGLTILH	8	Unmodified	_VGGLTILH_					0	0	0			REV__KLHL13|p.V327I|1|0.91|ENSG00000003096|chrX:117909688-117909688|C/T|missense_variant	REV__KLHL13|p.V327I|1|0.91|ENSG00000003096|chrX:117909688-117909688|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	405.2926940917969	2	405.247621	808.480688	-0.46285	-0.00018757	0.64064	0.00025962	0.17778	7.2047E-05	405.2477065895118	34.365	0.35453	34.365	34.253	34.608	0					10	6	2	0	0	0	0.7779	1	11278	11278		2.5775	0	1	978760	+		58054	26858	42334	42667	56648	56648					0.06878721076941474
VGGLTPSSSTV	11	Unmodified	_VGGLTPSSSTV_					0	0	0			REV__tr|U7SFS9|U7SFS9_FUSNUAdenylosuccinatesynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purAPE=3SV=1	REV__tr|U7SFS9|U7SFS9_FUSNUAdenylosuccinatesynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purAPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	503.6591796875	2	502.766571	1003.51859	-0.65691	-0.00033027	3.9303	0.001976	3.2733	0.0016457	502.7688775714382	23.728	0.30475	23.728	23.584	23.889	0					11	5	3	0	0	0	0.73016	1	6583	6583		8.7454	0.58988	1	3835400	+		58055	28170	42335	42668	56649	56649					0.016971424811117686
VGGNIVPY	8	Unmodified	_VGGNIVPY_					0	0	0			REV__ENSG00000108602|ENST00000225740|ALDH3A1	REV__ENSG00000108602|ENST00000225740|ALDH3A1	MULTI-SECPEP	A375_MHC_IP_R2	2	409.60333251953125	2	409.723978	817.433404	-0.10437	-4.2764E-05	-0.10204	-4.1806E-05	-0.20641	-8.457E-05	409.7239143334101	36.157	0.45948	36.927	36.698	37.157	0.7709					16	8	3	0	0	0	0.972	1	13084	13084		13.508	4.1604	1	3887800	+		58056	17545	42336	42669	56650	56650					0.017384418059350537
VGGNVAAD	8	Unmodified	_VGGNVAAD_					0	0	0			REV__nc|ENSG00000128512|Q8N1I0|DOCK4	REV__nc|ENSG00000128512|Q8N1I0|DOCK4	MULTI-SECPEP	A375_MHC_IP_R2	2	701.8369750976562	1	702.341694	701.334418	-1.1452	-0.00080434	-0.42818	-0.00030073	-1.5734	-0.0011051	702.3412626757193	25.204	0.30773	25.848	25.668	25.976	0.64368					7	5	2	0	0	0	0.972	1	8383	8383		5.2307	3.1709	1	1609800	+		58057	27216	42337	42670	56651	56651					-0.02819581158962592
VGGPGAAAEPD	11	Unmodified	_VGGPGAAAEPD_					0	0	0			REV__nc|ENSG00000008735|Q13387-3|MAPK8IP2	REV__nc|ENSG00000008735|Q13387-3|MAPK8IP2	MULTI-SECPEP	A375_MHC_IP_R2	2	471.12152099609375	2	470.722164	939.429775	-0.51628	-0.00024302	-0.17828	-8.392E-05	-0.69456	-0.00032694	470.7220269438883	69.678	0.76368	70.412	70.233	70.997	0.73421					21	14	2	0	0	0	0.95991	1	26414	26414		5.2969	0	1	3443000	+		58058	16178	42338	42671	56652	56652					-0.04236272758578252
VGGPQLSQ	8	Unmodified	_VGGPQLSQ_					0	0	0		ENST00000374831.8_1_6:32938956-32939746:+|nuORF;ENST00000374825.8_1_6:32936812-32939746:+|nuORF;ENST00000580234.1_1_6:32938180-32939746:+|nuORF;ENST00000496118.2_1_6:32937075-32939746:+|nuORF;ENST00000581002.1_1_6:32938681-32939746:+|nuORF	ENST00000374831.8_1_6:32938956-32939746:+|nuORF	ENST00000374831.8_1_6:32938956-32939746:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	393.611083984375	2	393.211235	784.407917	-0.16672	-6.5556E-05	-0.1636	-6.4328E-05	-0.33032	-0.00012988	393.21119719281796	105.35	1.2213	106.11	105.77	106.99	0.76308					30	23	2	0	0	0	0.77781	1	39853	39853		2.8892	0	1	989100			58059	11262	42339	42672	56653	56653					0.0070896728351499405
VGGPQLSQ	8	Unmodified	_VGGPQLSQ_					0	0	0		ENST00000374831.8_1_6:32938956-32939746:+|nuORF;ENST00000374825.8_1_6:32936812-32939746:+|nuORF;ENST00000580234.1_1_6:32938180-32939746:+|nuORF;ENST00000496118.2_1_6:32937075-32939746:+|nuORF;ENST00000581002.1_1_6:32938681-32939746:+|nuORF	ENST00000374831.8_1_6:32938956-32939746:+|nuORF	ENST00000374831.8_1_6:32938956-32939746:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	393.211235	784.407917	0.21481	8.4466E-05	-0.78147	-0.00030728	-0.56666	-0.00022282	393.2108539262022	105.87	0.4063	105.87	105.7	106.11	0	-0.11879	-0.00026282	NaN	2.8892	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1689400			58060	11262	42339	42672							0.0070896728351499405
VGGPRSER	8	Unmodified	_VGGPRSER_					0	0	0		GNAQ|p.Q209P|3|0.5|ENSG00000156052|chr9:77794572-77794572|T/G|missense_variant	GNAQ|p.Q209P|3|0.5|ENSG00000156052|chr9:77794572-77794572|T/G|missense_variant	GNAQ|p.Q209P|3|0.5|ENSG00000156052|chr9:77794572-77794572|T/G|missense_variant	MSMS	A375_MHC_IP_R2	2	429.2908935546875	2	429.233033	856.451513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.706	1	45.475	44.975	45.975	0.7691								0	0	0	0.16876	1	16692	16692		4.756	0	1				58061	14056	42340	42673	56654	56654					0.017545767806609547
VGGRFDAF	8	Unmodified	_VGGRFDAF_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MSMS	A375_MHC_IP_R1	1	434.7851257324219	2	434.719227	867.423902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21	1	21	20.5	21.5	0								0	0	0	0.16876	1	5463	5463		6.3541	0.59368	1				58062	1532	42341	42674	56655	56655					-0.015113264795786563
VGGSEVPEI	9	Unmodified	_VGGSEVPEI_					0	0	0		ENSG00000173442|ENST00000309295|EHBP1L1;ENST00000526990.1_1_11:65349145-65351290:+|nuORF	ENSG00000173442|ENST00000309295|EHBP1L1	ENSG00000173442|ENST00000309295|EHBP1L1	MULTI-MSMS	A375_MHC_IP_R2	2	443.6213684082031	2	443.729458	885.444362	-0.44663	-0.00019818	0.05498	2.4396E-05	-0.39165	-0.00017379	443.7294017740166	45.155	0.45635	45.921	45.694	46.15	0.76532					11	8	2	0	0	0	0.1478	1	16880	16880		42.095	4.1206	1	942780			58063	7797	42342	42675	56656	56656					-0.0029420061041491863
VGGSFAGP	8	Unmodified	_VGGSFAGP_					0	0	0		ENST00000373998.5_1_X:70474787-70474928:-|nuORF	ENST00000373998.5_1_X:70474787-70474928:-|nuORF	ENST00000373998.5_1_X:70474787-70474928:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	691.31005859375	1	691.340966	690.33369	-0.67107	-0.00046394	3.9757	0.0027486	3.3046	0.0022846	691.3411992883264	80.009	0.2068	80.009	79.879	80.086	0					5	3	2	0	0	0	0.77781	1	29187	29187		2.8892	0	1	872210			58064	11246	42343	42676	56657	56657					-0.0238637580799832
VGGSFPED	8	Unmodified	_VGGSFPED_					0	0	0		nc|ENSG00000126562|Q96J92-2|WNK4	nc|ENSG00000126562|Q96J92-2|WNK4	nc|ENSG00000126562|Q96J92-2|WNK4	MULTI-SECPEP	A375_MHC_IP_R1	1	807.0546264648438	1	807.351925	806.344648	-0.49066	-0.00039614	-2.0747	-0.001675	-2.5653	-0.0020711	807.3515682749401	125.27	0.29935	125.27	125.05	125.35	0					7	5	2	0	0	0	0.93416	1	47537	47537		9.3474	0.75416	1	14570000			58065	14583	42344	42677	56658	56658					-0.06627018224378389
VGGSILYRQDY	11	Unmodified	_VGGSILYRQDY_					0	0	0			REV__ENSG00000091157|ENST00000254442|WDR7	REV__ENSG00000091157|ENST00000254442|WDR7	MSMS	A375_MHC_IP_R2	2	424.1575622558594	3	424.21906	1269.63535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.438	1	45.207	44.707	45.707	0.7691								0	0	0	0.16161	1	16585	16585		10.315	1.0715	1		+		58066	16946	42345	42678	56659	56659					0.011318807008592557
VGGSQPPDI	9	Unmodified	_VGGSQPPDI_					0	0	0		ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	MSMS	A375_MHC_IP_R2	2	435.2825012207031	2	435.2218	868.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.727	1	87.46	86.96	87.96	0.733								0	0	0	0.15486	1	32981	32981		6.7232	0	1				58067	7115	42346	42679	56660	56660					-0.01043067407624676
VGGSSTSDN	9	Unmodified	_VGGSSTSDN_					0	0	0		tr|U7T0H7|U7T0H7_FUSNUAcetaldehydedehydrogenase(Acetylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00826PE=4SV=1	tr|U7T0H7|U7T0H7_FUSNUAcetaldehydedehydrogenase(Acetylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00826PE=4SV=1	tr|U7T0H7|U7T0H7_FUSNUAcetaldehydedehydrogenase(Acetylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00826PE=4SV=1	MSMS	A375_MHC_IP_R1	1	412.17633056640625	2	412.175047	822.33554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.844	1	70.844	70.344	71.344	0								0	0	0	0.15486	1	25729	25729		4.3292	0	1				58068	29885	42347	42680	56661	56661					-0.0827341158070567
VGGTAPGNWLR	11	Unmodified	_VGGTAPGNWLR_					0	0	0		ENST00000468303.5_1_1:24742100-24742349:-|nuORF	ENST00000468303.5_1_1:24742100-24742349:-|nuORF	ENST00000468303.5_1_1:24742100-24742349:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	376.9364929199219	3	376.536724	1126.58834	0.12058	4.5402E-05	-0.31707	-0.00011939	-0.19649	-7.3985E-05	376.53664293015385	55.289	0.66217	56.04	55.575	56.237	0.75075					18	12	2	0	0	0	0.98524	1	20859	20859		8.7518	1.1428	1	5627700			58069	12302	42348	42681	56662	56662					0.030110659403590034
VGGTPWSL	8	Unmodified	_VGGTPWSL_					0	0	0		tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1	tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1	tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1	MSMS	A375_MHC_IP_R1	1	408.6166076660156	2	408.716153	815.417754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.14	1	38.14	37.64	38.64	0								0	0	0	0.16876	1	12909	12909		20.871	6.2895	1				58070	29970	42349	42682	56663	56663					0.0026615528890943096
VGGTSSLM	8	Unmodified	_VGGTSSLM_					0	0	0		tr|U7T4H8|U7T4H8_FUSNUSpermidine/putrescinetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00343PE=3SV=1	tr|U7T4H8|U7T4H8_FUSNUSpermidine/putrescinetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00343PE=3SV=1	tr|U7T4H8|U7T4H8_FUSNUSpermidine/putrescinetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00343PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	752.271728515625	1	751.365466	750.35819	-0.97475	-0.00073239	0.94357	0.00070897	-0.031176	-2.3425E-05	751.366258035351	81.143	0.50732	81.888	81.673	82.18	0.74474					17	9	2	0	0	0	0.77702	1	30755	30755		5.7604	0	1	2535000			58071	30001	42350	42683	56664	56664					-0.026974837167927035
VGGVDLTGPQL	11	Unmodified	_VGGVDLTGPQL_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	A375_MHC_IP_R2	2	528.6924438476562	2	528.290214	1054.56587	-0.89718	-0.00047397	3.3023	0.0017446	2.4051	0.0012706	528.2929129703721	57.325	0.5614	58.074	57.865	58.427	0.74894					25	10	4	0	0	0	0.52598	1	21713	21713		29.082	0.59474	1	3424400			58072	9501	42351	42684	56665	56665					0.040774217520947786
VGGVDLTGPQL	11	Unmodified	_VGGVDLTGPQL_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MATCH	A375_MHC_IP_R1	1		2	528.290214	1054.56587	-0.57942	-0.0003061	5.5851	0.0029505	5.0057	0.0026444	528.2932205809492	58.27	0.55753	58.27	57.923	58.481	0	0.098163	0.00013142	NaN	29.082	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2349400			58073	9501	42351	42684							0.040774217520947786
VGGVGRAR	8	Unmodified	_VGGVGRAR_					0	0	0			REV__ENST00000367142.4_1_1:205698746-205719177:-|nuORF	REV__ENST00000367142.4_1_1:205698746-205719177:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	770.8887329101562	1	771.458396	770.45112	-0.92409	-0.0007129	-2.1789	-0.001681	-3.103	-0.0023939	771.456126928565	123.63	0.20216	123.96	123.89	124.09	0.32969					5	3	2	0	0	0	0.972	1	47581	47581		2.8892	0	1	7918100	+		58074	23957	42352	42685	56666	56666					0.056712018514645024
VGGVLRGL	8	Unmodified	_VGGVLRGL_					0	0	0		nc|ENSG00000168079|Q6ZMJ2-3|SCARA5;nc|ENSG00000168079|Q6ZMJ2-2|SCARA5;ENSG00000168079|ENST00000354914|SCARA5	nc|ENSG00000168079|Q6ZMJ2-3|SCARA5	nc|ENSG00000168079|Q6ZMJ2-3|SCARA5	MULTI-SECPEP	A375_MHC_IP_R1	1	386.1478576660156	2	385.747788	769.481023	0.63319	0.00024425	-0.23873	-9.2091E-05	0.39446	0.00015216	385.74769851269747	48.408	0.35434	48.408	48.223	48.577	0					10	6	2	0	0	0	0.972	1	17101	17101		9.3474	0	1	2137900			58075	7262	42353	42686	56667	56667					0.0870614079680081
VGGVVKSVAW	10	Unmodified	_VGGVVKSVAW_					0	0	0		nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	MULTI-MSMS	A375_MHC_IP_R1	1	1001.671630859375	1	1001.57784	1000.57057	0.69803	0.00069913	-1.0648	-0.0010665	-0.36678	-0.00036736	1001.5778649055853	114.35	0.2538	114.35	114.26	114.52	0					6	4	2	0	0	0	0.72335	1	41960	41960		1.8442	1.0506	1	9653900			58076	9937	42354	42687	56668	56668					0.07030350685522535
VGGWAGGL	8	Unmodified	_VGGWAGGL_					0	0	0		ENST00000307564.8_1_9:117099024-117099306:-|nuORF	ENST00000307564.8_1_9:117099024-117099306:-|nuORF	ENST00000307564.8_1_9:117099024-117099306:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	358.9485168457031	2	358.689939	715.365324	-0.29119	-0.00010445	0.43396	0.00015566	0.14277	5.121E-05	358.6899335627475	32.955	0.45835	33.692	33.417	33.876	0.73691					12	8	2	0	0	0	0.972	1	11739	11739		0.79363	0	1	1282300			58077	10590	42355	42688	56669	56669					-0.0037438305404293715
VGGWVVAI	8	Unmodified	_VGGWVVAI_					0	0	0			REV__nc|ENSG00000136068|O75369-5|FLNB	REV__nc|ENSG00000136068|O75369-5|FLNB	MULTI-SECPEP	A375_MHC_IP_R2	2	400.1383972167969	2	400.736889	799.459225	0.055545	2.2259E-05	0.65555	0.0002627	0.71109	0.00028496	400.7370606254881	91.92	0.70822	92.659	92.329	93.038	0.73902					33	13	4	0	0	0	0.972	1	35092	35092		2.8892	0	1	18184000	+		58078	18914	42356	42689	56670	56670					0.051473360482305
VGGYDSDG	8	Unmodified	_VGGYDSDG_					0	0	0			REV__APLF|p.P399S|1|0.21|ENSG00000169621|chr2:68545221-68545221|C/T|missense_variant	REV__APLF|p.P399S|1|0.21|ENSG00000169621|chr2:68545221-68545221|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	385.1400451660156	2	385.153583	768.292613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.211	1	33.963	33.463	34.463	0.75225								0	0	0	0.16876	1	11878	11878		2.8892	0	1		+		58079	15422	42357	42690	56671	56671					-0.1008018163813631
VGGYDSDG	8	Unmodified	_VGGYDSDG_					0	0	0			REV__APLF|p.P399S|1|0.21|ENSG00000169621|chr2:68545221-68545221|C/T|missense_variant	REV__APLF|p.P399S|1|0.21|ENSG00000169621|chr2:68545221-68545221|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	385.13763427734375	2	385.153583	768.292613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.869	1	52.621	52.121	53.121	0.75225								0	0	0	0.16876	1	19532	19532		0.79363	0	1		+		58080	15422	42357	42690	56672	56672					-0.1008018163813631
VGGYDSDG	8	Unmodified	_VGGYDSDG_					0	0	0			REV__APLF|p.P399S|1|0.21|ENSG00000169621|chr2:68545221-68545221|C/T|missense_variant	REV__APLF|p.P399S|1|0.21|ENSG00000169621|chr2:68545221-68545221|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	385.1330261230469	2	385.153583	768.292613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.573	1	65.313	64.813	65.813	0.74022								0	0	0	0.16876	1	24482	24482		0.79363	0	1		+		58081	15422	42357	42690	56673	56673					-0.1008018163813631
VGHFRTFLGI	10	Unmodified	_VGHFRTFLGI_					0	0	0		MMP3|p.P104L|1|0.69|ENSG00000149968|chr11:102842711-102842711|G/A|missense_variant	MMP3|p.P104L|1|0.69|ENSG00000149968|chr11:102842711-102842711|G/A|missense_variant	MMP3|p.P104L|1|0.69|ENSG00000149968|chr11:102842711-102842711|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	383.28509521484375	3	382.885464	1145.63456	-0.42438	-0.00016249	-0.38305	-0.00014667	-0.80743	-0.00030915	382.8853341107667	20.116	0.86401	20.726	20.6	21.464	0.61029					24	16	2	0	0	0	0.71364	1	6262	6262		6.1918	0	1	2267500			58082	14392	42358	42691	56674	56674					0.06757130842447623
VGHGWGGL	8	Unmodified	_VGHGWGGL_					0	0	0			REV__ENST00000598969.5_1_19:19021395-19021764:-|nuORF	REV__ENST00000598969.5_1_19:19021395-19021764:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	390.92779541015625	2	391.700838	781.387122	-0.26831	-0.0001051	0.014769	5.7852E-06	-0.25354	-9.9311E-05	391.70078869631305	48.805	0.50984	49.562	49.282	49.792	0.75737					15	9	2	0	0	0	0.972	1	18300	18300		2.8892	0	1	1242300	+		58083	26490	42359	42692	56675	56675					-0.012315783054759777
VGHIFRKVKRR	11	Unmodified	_VGHIFRKVKRR_					0	0	0		nc|ENSG00000196557|O95180-2|CACNA1H;ENSG00000196557|ENST00000348261|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	MULTI-SECPEP	A375_MHC_IP_R2	2	697.6799926757812	2	698.444029	1394.87351	-0.65156	-0.00045508	0.2768	0.00019333	-0.37476	-0.00026175	698.4451513849348	126.11	0.25403	126.41	126.23	126.48	0.2951					5	4	2	0	0	0	1.0007	1	49340	49340		0.35063	0	1	1796900			58084	9057	42360	42693	56676	56676					0.1918633086443151
VGHLHRTHF	9	Unmodified	_VGHLHRTHF_					0	0	0		ENST00000527447.1_1_11:85374724-85374784:-|nuORF	ENST00000527447.1_1_11:85374724-85374784:-|nuORF	ENST00000527447.1_1_11:85374724-85374784:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	552.1619262695312	2	552.296499	1102.57845	-0.74343	-0.0004106	-0.52397	-0.00028938	-1.2674	-0.00069998	552.2960984077571	66.403	1.0684	66.403	66.022	67.091	0					45	20	3	0	0	0	0.67539	1	23976	23976		16.149	0	1	30229000			58085	13101	42361	42694	56677	56677					0.03125922725644159
VGHLQSILEL	10	Unmodified	_VGHLQSILEL_					0	0	0		ENST00000315691.7_1_3:143704397-143704454:+|nuORF	ENST00000315691.7_1_3:143704397-143704454:+|nuORF	ENST00000315691.7_1_3:143704397-143704454:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	370.6170959472656	3	370.21688	1107.62881	0.27086	0.00010028	-0.084412	-3.1251E-05	0.18644	6.9024E-05	370.2168161343507	61.051	0.61132	61.051	60.77	61.382	0					33	11	4	0	0	0	0.72358	1	21968	21968		1.7423	0.67081	1	15200000			58086	10657	42362	42695	56678	56678					0.07929987540137517
VGHMMSTMV	9	Unmodified	_VGHMMSTMV_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	A375_MHC_IP_R2	2	496.692138671875	2	496.721741	991.428929	-0.56775	-0.00028201	0.86653	0.00043042	0.29877	0.00014841	496.7221589487224	66.804	0.81789	67.54	66.932	67.75	0.73631					22	15	2	0	0	0	0.60012	1	25109	25109		18.135	18.135	1	2132200			58087	2058	42363	42696	56679	56679					-0.0671284999513091
VGHPGGGG	8	Unmodified	_VGHPGGGG_					0	0	0			REV__nc|ENSG00000167483|Q86XR2-2|NIBAN3	REV__nc|ENSG00000167483|Q86XR2-2|NIBAN3	MULTI-SECPEP	A375_MHC_IP_R2	2	636.800048828125	1	637.305249	636.297973	-0.58613	-0.00037355	0.32825	0.0002092	-0.25788	-0.00016435	637.3052314402624	145.92	3.1816	145.94	145.3	148.48	0.021408					464	320	3	0	0	0	0.972	1	57423	57423		0	0	1	760770	+		58088	27342	42364	42697	56680	56680					-0.03472413264989882
VGHPGRLQE	9	Unmodified	_VGHPGRLQE_					0	0	0			REV__nc|ENSG00000075826|Q9NQW1-5|SEC31B	REV__nc|ENSG00000075826|Q9NQW1-5|SEC31B	MULTI-MSMS	A375_MHC_IP_R1	1	497.16693115234375	2	496.76724	991.519927	-0.3388	-0.00016831	-0.17891	-8.8876E-05	-0.51771	-0.00025718	496.767152348809	20.196	0.81101	20.196	19.725	20.536	0					26	15	3	0	0	0	0.6898	1	5140	5140		7.9102	0.62092	1	3257800	+		58089	16663	42365	42698	56681	56681					0.02382821360527032
VGHPGRLQE	9	Unmodified	_VGHPGRLQE_					0	0	0			REV__nc|ENSG00000075826|Q9NQW1-5|SEC31B	REV__nc|ENSG00000075826|Q9NQW1-5|SEC31B	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	496.76724	991.519927	-0.3388	-0.00016831	-0.17891	-8.8876E-05	-0.51771	-0.00025718	496.767152348809	20.196	0.81101	20.196	19.725	20.536	0	0	0	NaN	7.9102	26	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3257800	+		58090	16663	42365	42698							0.02382821360527032
VGHPHITY	8	Unmodified	_VGHPHITY_					0	0	0			REV__HEPH|p.R121C|1|0.6|ENSG00000089472|chrX:66172548-66172548|C/T|missense_variant	REV__HEPH|p.R121C|1|0.6|ENSG00000089472|chrX:66172548-66172548|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	461.6791687011719	2	462.240327	922.466101	-0.32841	-0.00015181	3.9527	0.0018271	3.6243	0.0016753	462.24280576595373	27.583	0.65664	27.583	27.28	27.937	0					16	12	2	0	0	0	0.972	1	8463	8463		5.7604	0	1	1518900	+		58091	16912	42366	42699	56682	56682					0.001766489287888362
VGHPLRNEKYL	11	Unmodified	_VGHPLRNEKYL_					0	0	0		ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	MULTI-MSMS	A375_MHC_IP_R2	2	442.6224365234375	3	442.582333	1324.72517	-0.14316	-6.3359E-05	-0.64312	-0.00028463	-0.78627	-0.00034799	442.5821737053718	43.881	0.30244	44.65	44.43	44.732	0.7691					12	5	3	0	0	0	0.73078	1	16382	16382		4.1166	0	1	1025300			58092	6718	42367	42700	56683	56683					0.07579555100096513
VGHTLGHAI	9	Unmodified	_VGHTLGHAI_					0	0	0		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MSMS	A375_MHC_IP_R2	2	452.62994384765625	2	452.753601	903.49265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.721	1	72.455	71.955	72.955	0.73421								0	0	0	0.15486	1	27210	27210		9.3474	2.9933	1				58093	2671	42368	42701	56684	56684					0.03704337820136061
VGHVFRTK	8	Unmodified	_VGHVFRTK_					0	0	0		ENST00000603680.5_1_12:51748165-51753149:-|nuORF;ENSG00000139629|ENST00000356317|GALNT6	ENST00000603680.5_1_12:51748165-51753149:-|nuORF	ENST00000603680.5_1_12:51748165-51753149:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	472.67694091796875	2	472.277244	942.539935	-0.38437	-0.00018153	0.10989	5.1897E-05	-0.27448	-0.00012963	472.2771910543642	143.74	0.40326	143.77	143.64	144.04	0.024414					11	7	2	0	0	0	0.77839	1	56170	56170		0.79363	0	1	3866000			58094	5094	42369	42702	56685	56685					0.06636617091135122
VGHVGPLQI	9	Unmodified	_VGHVGPLQI_					0	0	0		ENSG00000119401|ENST00000450136|TRIM32	ENSG00000119401|ENST00000450136|TRIM32	ENSG00000119401|ENST00000450136|TRIM32	MULTI-SECPEP	A375_MHC_IP_R2	2	459.6634826660156	2	460.271627	918.528701	-0.3986	-0.00018346	-0.75839	-0.00034906	-1.157	-0.00053253	460.27127202935714	44.407	0.25399	45.177	44.985	45.239	0.76909					8	4	2	0	0	0	0.75466	1	16577	16577		4.3292	0	1	991140			58095	3589	42370	42703	56686	56686					0.06617794996998327
VGHVKRILQG	10	Unmodified	_VGHVKRILQG_					0	0	0		nc|ENSG00000102780|Q86XP1-5|DGKH;nc|ENSG00000102780|Q86XP1-3|DGKH;ENSG00000102780|ENST00000337343|DGKH	nc|ENSG00000102780|Q86XP1-5|DGKH	nc|ENSG00000102780|Q86XP1-5|DGKH	MULTI-SECPEP	A375_MHC_IP_R1	1	554.1590576171875	2	553.843282	1105.67201	-0.4755	-0.00026335	-0.10529	-5.8313E-05	-0.58079	-0.00032167	553.8430101036811	37.198	0.30596	37.198	37.045	37.351	0					7	5	2	0	0	0	0.90853	1	12557	12557		15.847	12.251	1	1591800			58096	2392	42371	42704	56687	56687					0.12340222108082344
VGIALSGIDV	10	Unmodified	_VGIALSGIDV_					0	0	0			REV__GEMIN5|p.L1343Efs*7|1|0.2|ENSG00000082516|chr5:154891475-154891476|AA/-|frameshift_variant	REV__GEMIN5|p.L1343Efs*7|1|0.2|ENSG00000082516|chr5:154891475-154891476|AA/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	472.6761779785156	2	472.276575	942.538597	-0.55974	-0.00026435	-0.090891	-4.2926E-05	-0.65063	-0.00030728	472.2764295416667	65.691	0.71207	65.691	65.36	66.072	0					32	13	3	0	0	0	0.055257	1	23757	23757		74.423	1.4548	1	9991700	+		58097	16793	42372	42705	56688	56688					0.06502938211701803
VGIALSGIDV	10	Unmodified	_VGIALSGIDV_					0	0	0			REV__GEMIN5|p.L1343Efs*7|1|0.2|ENSG00000082516|chr5:154891475-154891476|AA/-|frameshift_variant	REV__GEMIN5|p.L1343Efs*7|1|0.2|ENSG00000082516|chr5:154891475-154891476|AA/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	472.6763000488281	2	472.276575	942.538597	-0.57147	-0.00026989	-0.25624	-0.00012102	-0.82771	-0.00039091	472.27634301432647	64.767	1.0677	65.505	65.155	66.222	0.73812					42	20	3	0	0	0	0.055257	1	24514	24514		74.423	1.4548	1	9017400	+		58098	16793	42372	42705	56689	56689					0.06502938211701803
VGIALSGIDV	10	Unmodified	_VGIALSGIDV_					0	0	0			REV__GEMIN5|p.L1343Efs*7|1|0.2|ENSG00000082516|chr5:154891475-154891476|AA/-|frameshift_variant	REV__GEMIN5|p.L1343Efs*7|1|0.2|ENSG00000082516|chr5:154891475-154891476|AA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	471.71600341796875	2	472.276575	942.538597	-0.57147	-0.00026989	-0.25624	-0.00012102	-0.82771	-0.00039091	472.27634301432647	64.767	1.0677	65.505	65.155	66.222	0.73812					42	20	3	0	0	0	0.8125	1	24658	24658		18.146	3.3081	1	9017400	+		58099	16793	42372	42705	56690	56690					0.06502938211701803
VGIALSGIDV	10	Unmodified	_VGIALSGIDV_					0	0	0			REV__GEMIN5|p.L1343Efs*7|1|0.2|ENSG00000082516|chr5:154891475-154891476|AA/-|frameshift_variant	REV__GEMIN5|p.L1343Efs*7|1|0.2|ENSG00000082516|chr5:154891475-154891476|AA/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	472.276575	942.538597	-0.55974	-0.00026435	-0.090891	-4.2926E-05	-0.65063	-0.00030728	472.2764295416667	65.691	0.71207	65.691	65.36	66.072	0	0.092683	7.72E-05	NaN	74.423	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9991700	+		58100	16793	42372	42705							0.06502938211701803
VGIAWVGG	8	Unmodified	_VGIAWVGG_					0	0	0		ENSG00000172208|ENST00000624868|OR4X2	ENSG00000172208|ENST00000624868|OR4X2	ENSG00000172208|ENST00000624868|OR4X2	MSMS	A375_MHC_IP_R2	2	380.1317138671875	2	379.713414	757.412274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.788	1	75.525	75.025	76.025	0.73752								0	0	0	0.16876	1	28386	28386		2.8892	2.0956	1				58101	7689	42373	42706	56691	56691					0.023864764970994656
VGICEKKECP	10	Unmodified	_VGICEKKECP_					0	0	0		ENST00000519187.5_2_8:133771681-133772790:-|nuORF	ENST00000519187.5_2_8:133771681-133772790:-|nuORF	ENST00000519187.5_2_8:133771681-133772790:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	369.5841979980469	3	369.184194	1104.53075	-0.012811	-4.7295E-06	0.61811	0.0002282	0.6053	0.00022347	369.18426343514744	19.155	0.40378	19.758	19.633	20.037	0.60308					9	7	2	0	0	0	0.93232	1	5885	5885		7.4771	1.6936	1	3857900			58102	12977	42374	42707	56692	56692					-0.017332803717181378
VGICSSGQ	8	Unmodified	_VGICSSGQ_					0	0	0		ENSG00000134757|ENST00000257189|DSG3	ENSG00000134757|ENST00000257189|DSG3	ENSG00000134757|ENST00000257189|DSG3	MULTI-MSMS	A375_MHC_IP_R1	1	750.2846069335938	1	750.345065	749.337789	-0.27114	-0.00020345	0.81475	0.00061135	0.54361	0.0004079	750.3456639716942	107.66	0.45984	107.66	107.49	107.95	0					14	8	2	0	0	0	0.76248	1	39519	39519		16.942	0	1	2203100			58103	4603	42375	42708	56693	56693					-0.046906543765885544
VGIDDVRDYL	10	Unmodified	_VGIDDVRDYL_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-SECPEP	A375_MHC_IP_R2	2	582.6632080078125	2	582.798403	1163.58225	-0.71587	-0.00041721	-0.75264	-0.00043864	-1.4685	-0.00085585	582.7982490371091	61.602	0.30126	62.347	62.172	62.473	0.74503					7	5	2	0	0	0	0.87163	1	23316	23316		2.9952	0	1	1202600			58104	4868	42376	42709	56694	56694					0.007005029181982536
VGIDEECA	8	Unmodified	_VGIDEECA_					0	0	0		tr|U7T8S4|U7T8S4_FUSNUPhzFfamilyphenazinebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00150PE=4SV=1	tr|U7T8S4|U7T8S4_FUSNUPhzFfamilyphenazinebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00150PE=4SV=1	tr|U7T8S4|U7T8S4_FUSNUPhzFfamilyphenazinebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00150PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	835.3195190429688	1	835.35021	834.342934	-0.69612	-0.0005815	-2.9299	-0.0024475	-3.626	-0.003029	835.346813803367	121.33	0.2551	121.33	121.16	121.41	0					6	4	2	0	0	0	0.75322	1	45069	45069		19.439	0	1	13306000			58105	30066	42377	42710	56695	56695					-0.08086395304644611
VGIDKISLL	9	Unmodified	_VGIDKISLL_					0	0	0			REV__tr|U7T6X0|U7T6X0_FUSNUNodTfamilyeffluxtransporter,outermembranefactor(OMF)lipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00036PE=3SV=1	REV__tr|U7T6X0|U7T6X0_FUSNUNodTfamilyeffluxtransporter,outermembranefactor(OMF)lipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00036PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	479.7021484375	2	479.302593	956.590633	-0.59552	-0.00028544	-0.26416	-0.00012661	-0.85968	-0.00041205	479.302349598002	72.82	0.55978	73.556	73.379	73.938	0.73541					13	10	2	0	0	0	0.43707	1	27674	27674		28.487	0	1	1397600	+		58106	28870	42378	42711	56696	56696					0.11060101625469088
VGIDPNAQGV	10	Unmodified	_VGIDPNAQGV_					0	0	0		tr|U7SRI0|U7SRI0_FUSNUD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01609PE=4SV=1	tr|U7SRI0|U7SRI0_FUSNUD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01609PE=4SV=1	tr|U7SRI0|U7SRI0_FUSNUD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01609PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	485.65423583984375	2	485.253631	968.49271	-0.50144	-0.00024333	1.4271	0.0006925	0.92564	0.00044917	485.25422816044113	131.72	0.2025	131.72	131.63	131.83	0					6	3	2	0	0	0	0.55307	1	50805	50805		43.772	3.8227	1	5819300			58107	29610	42379	42712	56697	56697					0.007202930294738508
VGIDPNAQGV	10	Unmodified	_VGIDPNAQGV_					0	0	0		tr|U7SRI0|U7SRI0_FUSNUD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01609PE=4SV=1	tr|U7SRI0|U7SRI0_FUSNUD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01609PE=4SV=1	tr|U7SRI0|U7SRI0_FUSNUD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01609PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	485.253631	968.49271	-0.57976	-0.00028133	2.284	0.0011083	1.7042	0.00082698	485.2546809587847	131.53	0.20456	131.72	131.59	131.8	0.18953	-0.00026679	0.00019777	NaN	43.772	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7168000			58108	29610	42379	42712							0.007202930294738508
VGIDSRYFD	9	Unmodified	_VGIDSRYFD_					0	0	0		nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A;ENST00000568515.1_1_15:66007788-66048788:-|nuORF	nc|ENSG00000174485|Q7Z401|DENND4A	nc|ENSG00000174485|Q7Z401|DENND4A	MULTI-SECPEP	A375_MHC_IP_R1	1	536.6585083007812	2	536.258914	1070.50327	-0.68467	-0.00036716	-0.099642	-5.3434E-05	-0.78432	-0.0004206	536.2588714021384	59.61	0.96534	59.61	59.245	60.21	0					24	18	3	0	0	0	0.61758	1	21435	21435		29.082	0	1	3727700			58109	7887	42380	42713	56698	56698					-0.029157243160852886
VGIFHQRPLK	10	Unmodified	_VGIFHQRPLK_					0	0	0			REV__ENSG00000109063|ENST00000583535|MYH3	REV__ENSG00000109063|ENST00000583535|MYH3	MULTI-MSMS	A375_MHC_IP_R2	2	399.9644470214844	3	398.90838	1193.70331	0.033387	1.3318E-05	-0.17415	-6.947E-05	-0.14076	-5.6152E-05	398.9082966226449	43.075	0.65847	43.847	43.573	44.231	0.7724					37	12	4	0	0	0	0.71866	1	16110	16110		1.9064	0.45126	1	17704000	+		58110	17568	42381	42714	56699	56699					0.11420795142180395
VGIFRFFIL	9	Unmodified	_VGIFRFFIL_					0	0	0			REV__KCNA10|p.L382R|1|0.4|ENSG00000143105|chr1:110517643-110517643|A/C|missense_variant	REV__KCNA10|p.L382R|1|0.4|ENSG00000143105|chr1:110517643-110517643|A/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	371.937744140625	3	371.226939	1110.65899	0.29788	0.00011058	0.38155	0.00014164	0.67943	0.00025222	371.22719243584845	59.083	1.1689	59.083	58.736	59.905	0					33	22	3	0	0	0	0.81645	1	21478	21478		0	0	1	2661900	+		58111	26818	42382	42715	56700	56700					0.10808390995998707
VGIGAQIY	8	Unmodified	_VGIGAQIY_					0	0	0		ENSG00000256870|ENST00000536262|SLC5A8	ENSG00000256870|ENST00000536262|SLC5A8	ENSG00000256870|ENST00000536262|SLC5A8	MULTI-MSMS	A375_MHC_IP_R2	2	820.8562622070312	1	820.45633	819.449054	-0.63068	-0.00051744	1.244	0.0010206	0.61332	0.0005032	820.4571388212136	146.71	0.084106	146.73	146.69	146.77	0.019913					8	5	2	0	0	0	0.77839	1	57131	57131		0.79363	0	1	176120			58112	9900	42383	42716	56701	56701					0.03210728323006151
VGIGGGFK	8	Unmodified	_VGIGGGFK_					0	0	0			REV__ENSG00000150627|ENST00000508596|WDR17	REV__ENSG00000150627|ENST00000508596|WDR17	MULTI-MSMS	A375_MHC_IP_R2	2	368.11370849609375	2	367.713414	733.412274	-0.15716	-5.7788E-05	0.85691	0.0003151	0.69976	0.00025731	367.71370066016925	56.428	0.40808	57.178	56.948	57.356	0.75015					12	7	2	0	0	0	0.7779	1	21337	21337		2.5775	1.7838	1	2270800	+		58113	19717	42384	42717	56702	56702					0.034904764970860924
VGIGGGFK	8	Unmodified	_VGIGGGFK_					0	0	0			REV__ENSG00000150627|ENST00000508596|WDR17	REV__ENSG00000150627|ENST00000508596|WDR17	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	367.713414	733.412274	-0.15716	-5.7788E-05	0.85691	0.0003151	0.69976	0.00025731	367.71370066016925	56.428	0.40808	57.178	56.948	57.356	0.75015	-0.029384	0.00013992	NaN	2.5775	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2270800	+		58114	19717	42384	42717							0.034904764970860924
VGIGNLQRT	9	Unmodified	_VGIGNLQRT_					0	0	0		ENSG00000144283|ENST00000389759|PKP4;nc|ENSG00000144283|Q99569-2|PKP4	ENSG00000144283|ENST00000389759|PKP4	ENSG00000144283|ENST00000389759|PKP4	MULTI-MSMS	A375_MHC_IP_R1	1	479.6771240234375	2	479.277441	956.540328	-0.19366	-9.2819E-05	-0.36199	-0.00017349	-0.55565	-0.00026631	479.2771797596836	108.05	1.5806	108.05	106.88	108.46	0					71	30	3	0	0	0	0.75251	1	39602	39602		2.3027	0	1	4959400			58115	5476	42385	42718	56703	56703					0.06031992020314192
VGIHGDSPYY	10	Unmodified	_VGIHGDSPYY_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A;nc|ENSG00000117362|Q96BI3-3|APH1A;ENST00000461320.5_1_1:150239547-150241394:-|nuORF	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MSMS	A375_MHC_IP_R1	1	554.6585693359375	2	554.258914	1106.50327	-0.54686	-0.0003031	-0.73287	-0.0004062	-1.2797	-0.0007093	554.2584933174493	50.739	0.50659	50.739	50.459	50.966	0					15	9	2	0	0	0	0.60556	1	18023	18023		20.454	0.039092	1	1821400			58116	3476	42386	42719	56704	56704					-0.04571724316087966
VGIHGDSPYY	10	Unmodified	_VGIHGDSPYY_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A;nc|ENSG00000117362|Q96BI3-3|APH1A;ENST00000461320.5_1_1:150239547-150241394:-|nuORF	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MATCH	A375_MHC_IP_R2	2		2	554.258914	1106.50327	-1.0064	-0.0005578	0.77556	0.00042986	-0.23082	-0.00012794	554.2587475890451	49.997	0.56052	50.751	50.394	50.955	0.75406	0.0059866	0.001286	NaN	20.454	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1537400			58117	3476	42386	42719							-0.04571724316087966
VGIIGTVVW	9	Unmodified	_VGIIGTVVW_					0	0	0		nc|ENSG00000163803|Q6P1J6-3|PLB1;ENSG00000163803|ENST00000327757|PLB1;nc|ENSG00000163803|Q6P1J6-5|PLB1	nc|ENSG00000163803|Q6P1J6-3|PLB1	nc|ENSG00000163803|Q6P1J6-3|PLB1	MULTI-SECPEP	A375_MHC_IP_R2	2	471.6920471191406	2	472.284203	942.553853	-0.97191	-0.00045902	-4.1176	-0.0019447	-5.0895	-0.0024037	472.28253999439943	57.161	0.30816	57.911	57.712	58.02	0.75015					9	5	2	0	0	0	0.60012	1	21608	21608		18.135	4.2289	1	959160			58118	6723	42387	42720	56705	56705					0.08027849799555042
VGIIIIEILPL	11	Unmodified	_VGIIIIEILPL_					0	0	0			REV__tr|U7SSJ8|U7SSJ8_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01291PE=4SV=1	REV__tr|U7SSJ8|U7SSJ8_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01291PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	1192.595703125	1	1192.79152	1191.78425	0.37059	0.00044204	2.5714	0.0030672	2.942	0.0035092	1193.8000828682132	115.25	0.15227	115.94	115.83	115.98	0.68999					4	2	2	0	0	0	0.73897	1	43425	43425		0.35063	0	1	1825200	+		58119	28434	42388	42721	56706	56706					0.1960263834168927
VGIKIKLVSI	10	Unmodified	_VGIKIKLVSI_					0	0	0			REV__ENST00000579991.2_1_17:56167732-56167909:+|nuORF	REV__ENST00000579991.2_1_17:56167732-56167909:+|nuORF	MSMS	A375_MHC_IP_R2	2	535.4367065429688	2	535.37081	1068.72707	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.994	1	98.753	98.253	99.253	0.75977								0	0	0	0.15628	1	37185	37185		0.45834	0	1		+		58120	26338	42389	42722	56707	56707					0.1954521585596467
VGILEINK	8	Unmodified	_VGILEINK_					0	0	0		ENSG00000115827|ENST00000375255|DCAF17;ENST00000468592.5_1_2:172300063-172325523:+|nuORF	ENSG00000115827|ENST00000375255|DCAF17	ENSG00000115827|ENST00000375255|DCAF17	MULTI-SECPEP	A375_MHC_IP_R1	1	442.9509582519531	2	443.273835	884.533118	-0.09028	-4.0019E-05	-0.40016	-0.00017738	-0.49044	-0.0002174	443.27370320515917	42.123	0.30273	42.123	41.88	42.183	0					9	5	2	0	0	0	0.972	1	14503	14503		2.3027	0.24298	1	1131600			58121	3343	42390	42723	56708	56708					0.08623259419891838
VGIPAATNSFK	11	Unmodified	_VGIPAATNSFK_					0	0	0		nc|ENSG00000283980|A0A1W2PPG7|GNG14;ENSG00000283980|ENST00000640151|GNG14	nc|ENSG00000283980|A0A1W2PPG7|GNG14	nc|ENSG00000283980|A0A1W2PPG7|GNG14	MULTI-MSMS	A375_MHC_IP_R1	1	553.2056884765625	2	552.806031	1103.59751	-0.4498	-0.00024865	-1.5041	-0.00083149	-1.9539	-0.0010801	552.8058751043573	62.34	0.76803	62.34	61.943	62.711	0					36	14	3	0	0	0	0.23944	1	22588	22588		51.415	18.63	1	10751000			58122	10052	42391	42724	56709	56709					0.0498541450601806
VGIPAATNSFK	11	Unmodified	_VGIPAATNSFK_					0	0	0		nc|ENSG00000283980|A0A1W2PPG7|GNG14;ENSG00000283980|ENST00000640151|GNG14	nc|ENSG00000283980|A0A1W2PPG7|GNG14	nc|ENSG00000283980|A0A1W2PPG7|GNG14	MULTI-SECPEP	A375_MHC_IP_R2	2	553.2055053710938	2	552.806031	1103.59751	-1.0984	-0.00060719	-1.1888	-0.00065718	-2.2872	-0.0012644	552.8058816857063	61.595	0.90744	62.34	61.869	62.776	0.74504					41	17	3	0	0	0	0.72748	1	23312	23312		59.368	37.622	1	12597000			58123	10052	42391	42724	56710	56710					0.0498541450601806
VGIPAATNSFK	11	Unmodified	_VGIPAATNSFK_					0	0	0		nc|ENSG00000283980|A0A1W2PPG7|GNG14;ENSG00000283980|ENST00000640151|GNG14	nc|ENSG00000283980|A0A1W2PPG7|GNG14	nc|ENSG00000283980|A0A1W2PPG7|GNG14	MULTI-SECPEP	A375_MHC_IP_R2	2	553.158935546875	2	552.806031	1103.59751	-1.1521	-0.00063689	0.033052	1.8271E-05	-1.119	-0.00061862	552.8058870678391	53.987	0.61389	54.738	54.454	55.068	0.75105					14	11	2	0	0	0	0.99473	1	20402	20402		12.175	3.4293	1	2545500			58124	10052	42391	42724	56711	56711					0.0498541450601806
VGIRSSYIRV	10	Unmodified	_VGIRSSYIRV_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	A375_MHC_IP_R1	1	384.29638671875	3	383.89614	1148.66659	0.27982	0.00010742	0.075659	2.9045E-05	0.35548	0.00013647	383.89621478767253	34.076	1.52	34.076	33.698	35.218	0					75	29	5	0	0	0	0.54638	1	11148	11148		24.882	7.0184	1	239410000			58125	2155	42392	42725	56712	56712					0.09820498525596122
VGIRSSYIRV	10	Unmodified	_VGIRSSYIRV_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	A375_MHC_IP_R2	2	384.2963562011719	3	383.89614	1148.66659	-0.37459	-0.0001438	0.33069	0.00012695	-0.043901	-1.6853E-05	383.89633340633634	33.264	1.7264	34.016	33.127	34.853	0.75225					96	33	6	0	0	0	0.35113	1	11859	11859		37.075	18.353	1	249350000			58126	2155	42392	42725	56713	56713					0.09820498525596122
VGISLWRHPI	10	Unmodified	_VGISLWRHPI_					0	0	0			REV__ENST00000502426.5_1_17:48755439-48768558:+|nuORF	REV__ENST00000502426.5_1_17:48755439-48768558:+|nuORF	MSMS	A375_MHC_IP_R2	2	393.2101135253906	3	393.232864	1176.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.784	1	62.526	62.026	63.026	0.74263								0	0	0	0.15435	1	23418	23418		3.5871	0.95582	1		+		58127	25499	42393	42726	56714	56714					0.09549106250869954
VGISRTKTSSN	11	Unmodified	_VGISRTKTSSN_					0	0	0			REV__ENST00000354485.5_1_9:676972-730286:+|nuORF	REV__ENST00000354485.5_1_9:676972-730286:+|nuORF	MSMS	A375_MHC_IP_R2	2	575.2413940429688	2	575.314751	1148.61495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.71	1	18.306	17.806	18.806	0.59616								0	0	0	0.1636	1	5223	5223		0	0	1		+		58128	17473	42394	42727	56715	56715					0.046587100410761195
VGISVSTKWDG	11	Unmodified	_VGISVSTKWDG_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	A375_MHC_IP_R1	1	575.2007446289062	2	574.800946	1147.58734	-0.10174	-5.8482E-05	-0.054936	-3.1577E-05	-0.15668	-9.0059E-05	574.8008486199204	62.353	0.76637	62.353	62.097	62.863	0					36	14	3	0	0	0	0.54969	1	22496	22496		27.223	4.487	1	7273400	+		58129	22304	42395	42728	56716	56716					0.01944806780829822
VGISVSTKWDG	11	Unmodified	_VGISVSTKWDG_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	A375_MHC_IP_R2	2	575.2003173828125	2	574.800946	1147.58734	-0.52356	-0.00030094	-0.40597	-0.00023335	-0.92952	-0.00053429	574.8007032020531	61.614	0.90751	62.359	62.02	62.928	0.74503					44	17	4	0	0	0	0.50535	1	23318	23318		30.703	9.1133	1	8552100	+		58130	22304	42395	42728	56717	56717					0.01944806780829822
VGIVKIKV	8	Unmodified	_VGIVKIKV_					0	0	0			REV__tr|U7T4S4|U7T4S4_FUSNUCelldivisionproteinFtsZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsZPE=3SV=1	REV__tr|U7T4S4|U7T4S4_FUSNUCelldivisionproteinFtsZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsZPE=3SV=1	MSMS	A375_MHC_IP_R2	2	428.29931640625	2	428.304939	854.595324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.539	1	60.286	59.786	60.786	0.74714								0	0	0	0.16876	1	22532	22532		0.79363	0	1		+		58131	28803	42396	42729	56718	56718					0.16221030558904204
VGIVQTLL	8	Unmodified	_VGIVQTLL_					0	0	0			REV__tr|U7T3J2|U7T3J2_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00296PE=3SV=1	REV__tr|U7T3J2|U7T3J2_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00296PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	422.2645263671875	2	421.770929	841.527304	-0.073384	-3.0951E-05	0.54689	0.00023066	0.4735	0.00019971	421.7708548357893	76.75	0.71271	76.75	76.421	77.133	0					20	13	2	0	0	0	0.77602	1	28088	28088		9.3831	0	1	2896900	+		58132	28776	42397	42730	56719	56719					0.10020160908254638
VGKAQISSNK	10	Unmodified	_VGKAQISSNK_					0	0	0			REV__SHCBP1|p.N318S|1|0.37|ENSG00000171241|chr16:46604114-46604114|T/C|missense_variant	REV__SHCBP1|p.N318S|1|0.37|ENSG00000171241|chr16:46604114-46604114|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	516.6959838867188	2	516.29583	1030.57711	-0.71676	-0.00037006	-0.20678	-0.00010676	-0.92354	-0.00047682	516.295652172486	126.12	1.2145	126.42	125.87	127.09	0.2951					51	23	3	0	0	0	0.71944	1	49168	49168		3.5965	0.60125	1	15183000	+		58133	27961	42398	42731	56720	56720					0.06304243846238933
VGKCAGAG	8	Unmodified	_VGKCAGAG_					0	0	0		ENST00000460762.1_1_11:66384628-66384676:+|nuORF	ENST00000460762.1_1_11:66384628-66384676:+|nuORF	ENST00000460762.1_1_11:66384628-66384676:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	662.229248046875	1	662.329021	661.321745	-0.75535	-0.00050029	0.86879	0.00057542	0.11343	7.5131E-05	662.3296585241226	131.25	0.30115	131.25	131.13	131.43	0					7	5	2	0	0	0	0.77839	1	50607	50607		0.79363	0	1	3442900			58134	12172	42399	42732	56721	56721					-0.022463158228447355
VGKDLLLL	8	Unmodified	_VGKDLLLL_					0	0	0			REV__nc|ENSG00000172175|Q9UDY8-2|MALT1	REV__nc|ENSG00000172175|Q9UDY8-2|MALT1	MSMS	A375_MHC_IP_R1	1	435.6224060058594	2	435.786579	869.558604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.909	1	93.909	93.409	94.409	0								0	0	0	0.16876	1	34518	34518		9.3474	0	1		+		58135	21127	42400	42733	56722	56722					0.11860733942330626
VGKEVNLVL	9	Unmodified	_VGKEVNLVL_					0	0	0		ENSG00000125780|ENST00000381458|TGM3	ENSG00000125780|ENST00000381458|TGM3	ENSG00000125780|ENST00000381458|TGM3	MULTI-SECPEP	A375_MHC_IP_R1	1	486.20001220703125	2	485.800217	969.585882	-0.13474	-6.5456E-05	0.20084	9.7566E-05	0.066098	3.2111E-05	485.8000065140292	88.587	0.56029	88.587	88.409	88.97	0					16	10	3	0	0	0	0.49205	1	32552	32552		21.537	6.9553	1	2986300			58136	3989	42401	42734	56723	56723					0.09987217482705546
VGKFRFLNE	9	Unmodified	_VGKFRFLNE_					0	0	0		nc|ENSG00000100083|Q9UJY5-4|GGA1;nc|ENSG00000100083|Q9UJY5-3|GGA1;ENSG00000100083|ENST00000343632|GGA1;nc|ENSG00000100083|Q9UJY5-6|GGA1;nc|ENSG00000125447|Q9NZ52-4|GGA3;ENSG00000125447|ENST00000537686|GGA3	nc|ENSG00000100083|Q9UJY5-4|GGA1;nc|ENSG00000125447|Q9NZ52-4|GGA3	nc|ENSG00000100083|Q9UJY5-4|GGA1	MULTI-MSMS	A375_MHC_IP_R1	1	371.26092529296875	3	370.541586	1108.60293	0.28283	0.0001048	0.10552	3.9101E-05	0.38835	0.0001439	370.5416085056736	19.951	1.1672	19.951	19.42	20.587	0					82	22	5	0	0	0	0.75764	1	5179	5179		0.96228	0.26461	1	95501000			58137	2112;3962	42402	42735	56724	56724					0.05297138088508291
VGKGTSGF	8	Unmodified	_VGKGTSGF_					0	0	0			REV__nc|ENSG00000111142|P50579-3|METAP2	REV__nc|ENSG00000111142|P50579-3|METAP2	MULTI-MSMS	A375_MHC_IP_R2	2	377.10052490234375	2	376.700503	751.386454	0.19578	7.3751E-05	-0.091932	-3.4631E-05	0.10385	3.9121E-05	376.70042299841543	31.538	0.66021	32.257	32.026	32.686	0.71857					18	12	2	0	0	0	0.77603	2	11151	11151;11157		9.3474	0.75416	1	15496000	+		58138	17651	42403	42736	56725;56726	56725					0.0008158225481338377
VGKGTSGF	8	Unmodified	_VGKGTSGF_					0	0	0			REV__nc|ENSG00000111142|P50579-3|METAP2	REV__nc|ENSG00000111142|P50579-3|METAP2	MULTI-SECPEP	A375_MHC_IP_R2	2	377.10052490234375	2	376.700503	751.386454	0.19578	7.3751E-05	-0.091932	-3.4631E-05	0.10385	3.9121E-05	376.70042299841543	31.538	0.66021	32.257	32.026	32.686	0.71857					18	12	2	0	0	0	0.97144	1	11151	11151		9.3474	3.587	1	15496000	+		58139	17651	42403	42736	56727	56727					0.0008158225481338377
VGKGYVTANR	10	Unmodified	_VGKGYVTANR_					0	0	0			REV__ENSG00000178685|ENST00000313028|PARP10	REV__ENSG00000178685|ENST00000313028|PARP10	MULTI-MSMS	A375_MHC_IP_R1	1	355.2573547363281	3	355.533091	1063.57744	-0.23499	-8.3546E-05	1.6227	0.00057692	1.3877	0.00049338	355.5334927726978	26.869	1.4625	26.869	26.221	27.684	0					17	7	3	0	0	0	0.62015	1	8207	8207		12.856	0.6812	1	2958200	+		58140	21513	42404	42737	56728	56728					0.04819663566058807
VGKIEHSFW	9	Unmodified	_VGKIEHSFW_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;nc|ENSG00000167986|Q16531-2|DDB1;ENST00000451943.6_1_11:61067610-61070297:-|nuORF;ENST00000538470.2_1_11:61067610-61070684:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-SECPEP	A375_MHC_IP_R2	2	368.5942077636719	3	368.194186	1101.56073	-0.052738	-1.9418E-05	-0.17398	-6.4058E-05	-0.22672	-8.3475E-05	368.19418125881424	49.786	0.71175	50.54	50.142	50.854	0.75406					31	13	4	0	0	0	0.65527	1	18721	18721		16.566	3.6933	1	3376100			58141	7247	42405	42738	56729	56729					0.0140116268012207
VGKKDFEKVR	10	Unmodified	_VGKKDFEKVR_					0	0	0		COL22A1|p.E52K|1|0.27|ENSG00000169436|chr8:138878254-138878254|C/T|missense_variant	COL22A1|p.E52K|1|0.27|ENSG00000169436|chr8:138878254-138878254|C/T|missense_variant	COL22A1|p.E52K|1|0.27|ENSG00000169436|chr8:138878254-138878254|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	402.63385009765625	3	402.571545	1204.69281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.496	1	53.496	52.996	53.996	0								0	0	0	0.15397	1	19074	19074		7.9454	2.6485	1				58142	555	42406	42739	56730	56730					0.09864767697081334
VGKKKKKKKKA	11	Unmodified	_VGKKKKKKKKA_					0	0	0			REV__ENST00000406961.5_1_2:24991338-24991476:+|nuORF	REV__ENST00000406961.5_1_2:24991338-24991476:+|nuORF	MSMS	A375_MHC_IP_R1	1	424.28240966796875	3	424.306363	1269.89726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.549	1	24.549	24.049	25.049	0								0	0	0	0.16358	1	6993	6993		0.094841	0.094841	1		+		58143	24448	42407	42740	56731	56731					0.27310751578238524
VGKKLVKEGPF	11	Unmodified	_VGKKLVKEGPF_					0	0	0		ENSG00000100234|ENST00000266085|TIMP3	ENSG00000100234|ENST00000266085|TIMP3	ENSG00000100234|ENST00000266085|TIMP3	MULTI-MSMS	A375_MHC_IP_R2	2	401.63238525390625	3	401.248291	1200.72304	-0.031712	-1.2724E-05	-1.2504	-0.00050171	-1.2821	-0.00051443	401.2473370053581	31.999	0.30196	32.736	32.504	32.806	0.73691					9	5	2	0	0	0	0.73016	1	11278	11278		8.7518	0.59626	1	924200			58144	2141	42408	42741	56732	56732					0.130711263622743
VGKKPKWRG	9	Unmodified	_VGKKPKWRG_					0	0	0		chr19:9468334-9469105|213|16.0|0.57|4.8|-|2|ZNF560,ZNF560|1	chr19:9468334-9469105|213|16.0|0.57|4.8|-|2|ZNF560,ZNF560|1	chr19:9468334-9469105|213|16.0|0.57|4.8|-|2|ZNF560,ZNF560|1	MSMS	A375_MHC_IP_R1	1	352.6009521484375	3	352.553937	1054.63998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.853	1	25.853	25.353	26.353	0								0	0	0	0.15486	1	7616	7616		7.1017	1.8048	1				58145	458	42409	42742	56733	56733					0.11484854424929836
VGKLQHLV	8	Unmodified	_VGKLQHLV_					0	0	0			REV__nc|ENSG00000155066|Q8N271-2|PROM2	REV__nc|ENSG00000155066|Q8N271-2|PROM2	MULTI-SECPEP	A375_MHC_IP_R1	1	447.68194580078125	2	447.281995	892.549437	0.16579	7.4153E-05	-0.32233	-0.00014417	-0.15654	-7.0019E-05	447.2818583683991	45.509	0.65662	45.509	45.132	45.789	0					19	12	2	0	0	0	0.86765	1	15982	15982		12.532	0	1	2545400	+		58146	19912	42410	42743	56734	56734					0.09886385376648832
VGKLQHLV	8	Unmodified	_VGKLQHLV_					0	0	0			REV__nc|ENSG00000155066|Q8N271-2|PROM2	REV__nc|ENSG00000155066|Q8N271-2|PROM2	MULTI-SECPEP	A375_MHC_IP_R2	2	447.68182373046875	2	447.281995	892.549437	-0.44812	-0.00020044	-0.060742	-2.7169E-05	-0.50886	-0.0002276	447.28193356059126	44.697	0.71431	45.466	45.086	45.8	0.7691					20	13	2	0	0	0	0.86765	1	16685	16685		18.135	0	1	2094500	+		58147	19912	42410	42743	56735	56735					0.09886385376648832
VGKLVLNRN	9	Unmodified	_VGKLVLNRN_					0	0	0		ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	MULTI-SECPEP	A375_MHC_IP_R1	1	507.1763610839844	2	506.816733	1011.61891	-0.47961	-0.00024307	-0.016756	-8.4922E-06	-0.49636	-0.00025157	506.8166561182661	52.582	0.40844	52.582	52.438	52.847	0					15	7	3	0	0	0	0.78348	1	18744	18744		7.9102	0	1	2542600			58148	3731	42411	42744	56736	56736					0.11356844325393922
VGKNKLLI	8	Unmodified	_VGKNKLLI_					0	0	0			REV__tr|U7SSR0|U7SSR0_FUSNUResolvase/invertase-typerecombinasecatalyticdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01540PE=3SV=1	REV__tr|U7SSR0|U7SSR0_FUSNUResolvase/invertase-typerecombinasecatalyticdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01540PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	443.1566162109375	2	442.80002	883.585488	-0.16847	-7.4599E-05	0.086306	3.8216E-05	-0.082165	-3.6383E-05	442.8001750826286	111.52	0.25697	112.25	112.06	112.31	0.73328					5	4	2	0	0	0	0.94479	1	42063	42063		19.439	0	1	535080	+		58149	28443	42412	42745	56737	56737					0.13903842553509094
VGKNVVAL	8	Unmodified	_VGKNVVAL_					0	0	0		ENSG00000184986|ENST00000392519|TMEM121	ENSG00000184986|ENST00000392519|TMEM121	ENSG00000184986|ENST00000392519|TMEM121	MSMS	A375_MHC_IP_R2	2	400.29571533203125	2	400.255446	798.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.393	1	59.142	58.642	59.642	0.74894								0	0	0	0.16876	1	22094	22094		5.2307	0	1				58150	8626	42413	42746	56738	56738					0.08903007593983148
VGKPAANRAF	10	Unmodified	_VGKPAANRAF_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-SECPEP	A375_MHC_IP_R1	1	516.19287109375	2	515.793258	1029.57196	-0.63664	-0.00032837	-0.27665	-0.0001427	-0.91329	-0.00047107	515.7931695161191	27.609	0.40472	27.609	27.381	27.786	0					13	7	2	0	0	0	0.76414	1	8394	8394		20.454	1.0917	1	4985200			58151	1538	42414	42747	56739	56739					0.05835984774239478
VGKPFVGP	8	Unmodified	_VGKPFVGP_					0	0	0		ENST00000360338.3_1_19:57803251-57803299:+|nuORF	ENST00000360338.3_1_19:57803251-57803299:+|nuORF	ENST00000360338.3_1_19:57803251-57803299:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	401.1368713378906	2	400.736889	799.459225	0.23535	9.4314E-05	0.40026	0.0001604	0.63562	0.00025471	400.7369611689884	95.01	0.86172	95.76	95.179	96.041	0.75045					36	16	3	0	0	0	0.77781	1	36008	36008		2.8892	0.31174	1	7356600			58152	11025	42415	42748	56740	56740					0.051473360482305
VGKPFVGP	8	Unmodified	_VGKPFVGP_					0	0	0		ENST00000360338.3_1_19:57803251-57803299:+|nuORF	ENST00000360338.3_1_19:57803251-57803299:+|nuORF	ENST00000360338.3_1_19:57803251-57803299:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	400.736889	799.459225	-0.33909	-0.00013589	0.9828	0.00039384	0.64371	0.00025796	400.7372020850018	95.774	0.80803	95.774	95.312	96.12	0	0.0066878	0.00020409	NaN	2.8892	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5322000			58153	11025	42415	42748							0.051473360482305
VGKPFVGP	8	Unmodified	_VGKPFVGP_					0	0	0		ENST00000360338.3_1_19:57803251-57803299:+|nuORF	ENST00000360338.3_1_19:57803251-57803299:+|nuORF	ENST00000360338.3_1_19:57803251-57803299:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	400.736889	799.459225	0.23535	9.4314E-05	0.40026	0.0001604	0.63562	0.00025471	400.7369611689884	95.01	0.86172	95.76	95.179	96.041	0.75045	-0.0066878	-0.0002628	NaN	2.8892	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7356600			58154	11025	42415	42748							0.051473360482305
VGKPGPFG	8	Unmodified	_VGKPGPFG_					0	0	0			REV__nc|ENSG00000142173|P12110-3|COL6A2	REV__nc|ENSG00000142173|P12110-3|COL6A2	MULTI-SECPEP	A375_MHC_IP_R1	1	380.11358642578125	2	379.713414	757.412274	0.33808	0.00012837	0.75654	0.00028727	1.0946	0.00041564	379.7135698180072	60.403	0.50898	60.403	60.109	60.618	0					16	9	2	0	0	0	0.972	1	21767	21767		0.79363	0.79363	1	1576200	+		58155	19296	42416	42749	56741	56741					0.023864764970994656
VGKPGPFG	8	Unmodified	_VGKPGPFG_					0	0	0			REV__nc|ENSG00000142173|P12110-3|COL6A2	REV__nc|ENSG00000142173|P12110-3|COL6A2	MULTI-SECPEP	A375_MHC_IP_R2	2	380.1134948730469	2	379.713414	757.412274	0.32132	0.00012201	0.57493	0.00021831	0.89624	0.00034032	379.7135248458132	94.97	0.55807	95.72	95.381	95.939	0.75045					15	10	2	0	0	0	0.972	1	36090	36090		0	0	1	1583400	+		58156	19296	42416	42749	56742	56742					0.023864764970994656
VGKPGPFG	8	Unmodified	_VGKPGPFG_					0	0	0			REV__nc|ENSG00000142173|P12110-3|COL6A2	REV__nc|ENSG00000142173|P12110-3|COL6A2	MULTI-SECPEP	A375_MHC_IP_R2	2	379.16192626953125	2	379.713414	757.412274	-0.019132	-7.2646E-06	1.0068	0.0003823	0.98769	0.00037504	379.7135859334304	97.886	0.25546	98.642	98.483	98.739	0.75586					6	4	2	0	0	0	0.972	1	37137	37137		0	0	1	449760	+		58157	19296	42416	42749	56743	56743					0.023864764970994656
VGKPSGGF	8	Unmodified	_VGKPSGGF_					0	0	0		ZNF556|p.L410F|1|0.25|ENSG00000172000|chr19:2878186-2878186|C/T|missense_variant	ZNF556|p.L410F|1|0.25|ENSG00000172000|chr19:2878186-2878186|C/T|missense_variant	ZNF556|p.L410F|1|0.25|ENSG00000172000|chr19:2878186-2878186|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	375.1033020019531	2	374.703046	747.391539	-0.055112	-2.0651E-05	0.41077	0.00015392	0.35566	0.00013327	374.7031670271386	59.56	1.1128	60.308	59.742	60.855	0.74714					27	21	2	0	0	0	0.972	1	22525	22525		2.8892	0	1	1387700			58158	30228	42417	42750	56744	56744					0.0077388611744027
VGKRGTVA	8	Unmodified	_VGKRGTVA_					0	0	0			REV__ENST00000252936.7_1_10:135093167-135093266:-|nuORF	REV__ENST00000252936.7_1_10:135093167-135093266:-|nuORF	MSMS	A375_MHC_IP_R2	2	394.2728576660156	2	394.24287	786.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.48	1	58.229	57.729	58.729	0.74894								0	0	0	0.16876	1	21736	21736		4.3292	0	1		+		58159	23132	42418	42751	56745	56745					0.0694095279142175
VGKRKLLEEHT	11	Unmodified	_VGKRKLLEEHT_					0	0	0			REV__ABCB11|p.E645K|1|0.35|ENSG00000073734|chr2:168969428-168969428|C/T|missense_variant	REV__ABCB11|p.E645K|1|0.35|ENSG00000073734|chr2:168969428-168969428|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	655.7816772460938	2	655.382968	1308.75138	-0.83498	-0.00054723	-0.5154	-0.00033779	-1.3504	-0.00088502	655.3825087215033	131.58	6.1686	131.77	131.29	137.46	0.18953					405	120	8	0	0	0	0.73795	1	53650	53650		1.3295	0.13619	1	1295200000	+		58160	15285	42419	42752	56746	56746					0.10935824271541605
VGKRLDTV	8	Unmodified	_VGKRLDTV_					0	0	0			REV__ENSG00000138604|ENST00000261858|GLCE	REV__ENSG00000138604|ENST00000261858|GLCE	MULTI-SECPEP	A375_MHC_IP_R1	1	444.66912841796875	2	444.269084	886.523616	0.12961	5.758E-05	-0.29988	-0.00013323	-0.17027	-7.5646E-05	444.26894634552	42.741	0.40509	42.741	42.537	42.942	0					11	7	2	0	0	0	0.77651	1	14816	14816		34.102	8.7031	1	4646500	+		58161	19100	42420	42753	56747	56747					0.07581491134374119
VGKRLDTV	8	Unmodified	_VGKRLDTV_					0	0	0			REV__ENSG00000138604|ENST00000261858|GLCE	REV__ENSG00000138604|ENST00000261858|GLCE	MULTI-SECPEP	A375_MHC_IP_R2	2	444.6686096191406	2	444.269084	886.523616	-0.37804	-0.00016795	-0.29417	-0.00013069	-0.6722	-0.00029864	444.26886675656806	41.785	0.40893	42.559	42.35	42.759	0.77451					12	7	2	0	0	0	0.77651	1	15535	15535		34.102	5.0209	1	4315700	+		58162	19100	42420	42753	56748	56748					0.07581491134374119
VGKRPVLK	8	Unmodified	_VGKRPVLK_					0	0	0			REV__ENSG00000162654|ENST00000355754|GBP4	REV__ENSG00000162654|ENST00000355754|GBP4	MULTI-SECPEP	A375_MHC_IP_R1	1	895.917724609375	1	896.603998	895.596721	-0.71581	-0.00064179	-3.3542	-0.0030074	-4.07	-0.0036492	896.6019281248319	122.78	1.7165	122.78	121.67	123.38	0					38	33	2	0	0	0	0.972	1	45908	45908		2.8892	0	1	99864000	+		58163	20286	42421	42754	56749	56749					0.14474664647639202
VGKTSLIHRF	10	Unmodified	_VGKTSLIHRF_					0	0	0		ENSG00000100228|ENST00000263116|RAB36	ENSG00000100228|ENST00000263116|RAB36	ENSG00000100228|ENST00000263116|RAB36	MULTI-MSMS	A375_MHC_IP_R2	2	386.9534912109375	3	386.564502	1156.67168	-0.14375	-5.5567E-05	0.14725	5.6921E-05	0.003502	1.3537E-06	386.89903416231914	77.448	0.20366	78.191	78.062	78.265	0.74293					5	3	2	0	0	0	0.69833	1	29366	29366		7.9454	3.7559	1	478630			58164	2140	42422	42755	56750	56750					0.09960802388218326
VGKVGAKY	8	Unmodified	_VGKVGAKY_					0	0	0			REV__tr|U7T457|U7T457_FUSNUTryptophanaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00262PE=3SV=1	REV__tr|U7T457|U7T457_FUSNUTryptophanaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00262PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	411.6474609375	2	411.247621	820.480688	-0.46722	-0.00019214	1.219	0.00050132	0.7518	0.00030918	411.2482239932508	29.786	0.5031	30.485	30.185	30.688	0.69872					13	9	2	0	0	0	0.77488	1	10452	10452		13.508	4.9146	1	1955500	+		58165	28792	42423	42756	56751	56751					0.06326721076936792
VGKVGRPG	8	Unmodified	_VGKVGRPG_					0	0	0			REV__nc|ENSG00000204248|P13942-8|COL11A2	REV__nc|ENSG00000204248|P13942-8|COL11A2	MULTI-SECPEP	A375_MHC_IP_R2	2	385.93084716796875	2	385.237587	768.460622	0.062136	2.3937E-05	-0.23575	-9.0818E-05	-0.17361	-6.6881E-05	385.23730714280566	43.645	0.35258	44.415	44.278	44.631	0.76909					8	6	2	0	0	0	0.972	1	16352	16352		5.7604	0	1	513850	+		58166	15764	42424	42757	56752	56752					0.06712970136982221
VGKVKKKLRK	10	Unmodified	_VGKVKKKLRK_					0	0	0		nc|ENSG00000166960|Q5BJE1-3|CCDC178;nc|ENSG00000166960|Q5BJE1-4|CCDC178;ENSG00000166960|ENST00000383096|CCDC178	nc|ENSG00000166960|Q5BJE1-3|CCDC178	nc|ENSG00000166960|Q5BJE1-3|CCDC178	MSMS	A375_MHC_IP_R2	2	592.603759765625	2	592.4217	1182.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.943	1	98.701	98.201	99.201	0.75867								0	0	0	0.15629	1	37167	37167		0.40072	0	1				58167	7141	42425	42758	56753	56753					0.24474506998376455
VGKVKKKLRKK	11	Unmodified	_VGKVKKKLRKK_					0	0	0		nc|ENSG00000166960|Q5BJE1-3|CCDC178;nc|ENSG00000166960|Q5BJE1-4|CCDC178;ENSG00000166960|ENST00000383096|CCDC178	nc|ENSG00000166960|Q5BJE1-3|CCDC178	nc|ENSG00000166960|Q5BJE1-3|CCDC178	MSMS	A375_MHC_IP_R1	1	656.4177856445312	2	656.469181	1310.92381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.567	1	98.567	98.067	99.067	0								0	0	0	0.16353	1	36214	36214		0.35063	0.35063	1				58168	7141	42426	42759	56754	56754					0.2807844046956234
VGKVWLGK	8	Unmodified	_VGKVWLGK_					0	0	0			REV__ENST00000468031.1_1_16:449329-450339:+|nuORF	REV__ENST00000468031.1_1_16:449329-450339:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	444.1788635253906	2	443.779088	885.543623	-0.29132	-0.00012928	0.44561	0.00019775	0.1543	6.8474E-05	443.7791925769848	32.519	0.50369	32.519	32.282	32.785	0					17	9	2	0	0	0	0.972	1	10547	10547		5.7604	0	1	2839800	+		58169	25068	42427	42760	56755	56755					0.09627286864997586
VGKWFVRKTTL	11	Unmodified	_VGKWFVRKTTL_					0	0	0			REV__ENST00000579128.1_1_18:657682-669175:+|nuORF	REV__ENST00000579128.1_1_18:657682-669175:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	445.15057373046875	3	445.602957	1333.78704	-0.081447	-3.6293E-05	-0.059284	-2.6417E-05	-0.14073	-6.271E-05	445.60291024524537	55	0.4061	55	54.873	55.279	0					12	7	2	0	0	0	1.0011	1	19731	19731		0.08335	0	1	2433300	+		58170	21424	42428	42761	56756	56756					0.13349906519215438
VGLDREVRWR	10	Unmodified	_VGLDREVRWR_					0	0	0		ENST00000524089.1_1_16:89238206-89251879:+|nuORF	ENST00000524089.1_1_16:89238206-89251879:+|nuORF	ENST00000524089.1_1_16:89238206-89251879:+|nuORF	MSMS	A375_MHC_IP_R1	1	429.2911376953125	3	429.242311	1284.7051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.41	1	43.41	42.91	43.91	0								0	0	0	0.15435	1	15087	15087		3.5871	0.26742	1				58171	13054	42429	42762	56757	56757					0.07413804160114523
VGLFKRVNK	9	Unmodified	_VGLFKRVNK_					0	0	0		tr|U7SRL1|U7SRL1_FUSNUManganese/zinc/irontransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01563PE=4SV=1	tr|U7SRL1|U7SRL1_FUSNUManganese/zinc/irontransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01563PE=4SV=1	tr|U7SRL1|U7SRL1_FUSNUManganese/zinc/irontransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01563PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	354.6258239746094	3	354.225709	1059.6553	-0.1566	-5.5472E-05	0.19317	6.8426E-05	0.036571	1.2955E-05	354.2257975289543	88.421	1.0647	89.153	88.468	89.533	0.7318					28	20	2	0	0	0	0.74768	1	33656	33656		2.7352	0	1	2226300			58172	29613	42430	42763	56758	56758					0.12785721222144275
VGLFTNIWL	9	Unmodified	_VGLFTNIWL_					0	0	0			REV__ENSG00000163959|ENST00000296327|SLC51A	REV__ENSG00000163959|ENST00000296327|SLC51A	MSMS	A375_MHC_IP_R1	1	354.9220886230469	3	354.870932	1061.59097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.735	1	48.735	48.235	49.235	0								0	0	0	0.15486	1	17207	17207		1.1933	0.23107	1		+		58173	20432	42431	42764	56759	56759					0.06263521345317713
VGLGFLSVWL	10	Unmodified	_VGLGFLSVWL_					0	0	0		ENST00000425953.5_1_2:95873283-95873385:+|nuORF	ENST00000425953.5_1_2:95873283-95873385:+|nuORF	ENST00000425953.5_1_2:95873283-95873385:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	545.7171020507812	2	545.81841	1089.62227	-0.82186	-0.00044859	-0.21952	-0.00011982	-1.0414	-0.00056841	545.8182868543631	124.69	0.45497	124.69	124.39	124.85	0					14	8	2	0	0	0	0.7178	1	47164	47164		4.3292	0	1	17218000			58174	11800	42432	42765	56760	56760					0.08104094379405069
VGLGGWLPP	9	Unmodified	_VGLGGWLPP_					0	0	0		ENST00000423620.6_1_8:95653352-95653454:+|nuORF	ENST00000423620.6_1_8:95653352-95653454:+|nuORF	ENST00000423620.6_1_8:95653352-95653454:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	895.90380859375	1	895.503615	894.496338	-0.54137	-0.0004848	0.34964	0.00031311	-0.19173	-0.0001717	895.5037747354291	140.05	0.92479	140.05	139.78	140.7	0					37	17	3	0	0	0	0.75251	1	54012	54012		2.3027	1.5091	1	3668800			58175	11761	42433	42766	56761	56761					0.04487007593979797
VGLGHNAR	8	Unmodified	_VGLGHNAR_					0	0	0			REV__ENST00000533444.1_1_8:145150552-145150603:+|nuORF	REV__ENST00000533444.1_1_8:145150552-145150603:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	412.63018798828125	2	412.230294	822.446034	0.23648	9.7485E-05	0.48394	0.0001995	0.72042	0.00029698	412.2302820301609	104.76	5.3454	104.76	102.76	108.1	0					222	104	4	0	0	0	0.77839	1	37891	37891		0.79363	0	1	16314000	+		58176	25881	42434	42767	56762	56762					0.02770897988852994
VGLGRAVEVRR	11	Unmodified	_VGLGRAVEVRR_					0	0	0		ENST00000497918.5_1_2:220029863-220033027:-|nuORF	ENST00000497918.5_1_2:220029863-220033027:-|nuORF	ENST00000497918.5_1_2:220029863-220033027:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	606.7683715820312	2	606.370195	1210.72584	-0.45782	-0.00027761	-0.99459	-0.00060309	-1.4524	-0.0008807	606.369507407255	129.12	1.9312	129.12	128.48	130.41	0					96	37	3	0	0	0	0.73779	1	49455	49455		1.4819	0	1	113470000			58177	12751	42435	42768	56763	56763					0.12890394539772387
VGLGREPR	8	Unmodified	_VGLGREPR_					0	0	0			REV__ENST00000324941.4_1_7:73085775-73085967:+|nuORF	REV__ENST00000324941.4_1_7:73085775-73085967:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	442.6591491699219	2	442.259051	882.503549	-0.13737	-6.0755E-05	-3.0683	-0.001357	-3.2057	-0.0014177	442.25905658937097	112.64	1.0732	113.36	112.61	113.68	0.72458					34	20	2	0	0	0	0.77781	1	42379	42379		2.8892	0	1	2425600	+		58178	23594	42436	42769	56764	56764					0.057597401944121884
VGLGRGRN	8	Unmodified	_VGLGRGRN_					0	0	0			REV__nc|ENSG00000115266|O95996-2|APC2	REV__nc|ENSG00000115266|O95996-2|APC2	MULTI-MSMS	A375_MHC_IP_R1	1	415.14349365234375	2	414.743568	827.472583	0.36987	0.0001534	-0.396	-0.00016424	-0.026126	-1.0835E-05	414.7433306195982	100.91	1.9746	100.91	99.975	101.95	0					65	38	2	0	0	0	0.77781	1	37076	37076		2.8892	0.31174	1	4916500	+		58179	17868	42437	42770	56765	56765					0.05194586880179486
VGLGRGRN	8	Unmodified	_VGLGRGRN_					0	0	0			REV__nc|ENSG00000115266|O95996-2|APC2	REV__nc|ENSG00000115266|O95996-2|APC2	MULTI-MSMS	A375_MHC_IP_R2	2	415.1436767578125	2	414.743568	827.472583	0.07266	3.0135E-05	0.16698	6.9255E-05	0.23964	9.939E-05	414.7434936753706	98.61	1.0686	99.37	98.945	100.01	0.75977					38	20	2	0	0	0	0.77781	1	37294	37294		2.8892	2.8892	1	3466000	+		58180	17868	42437	42770	56766	56766					0.05194586880179486
VGLGRGRN	8	Unmodified	_VGLGRGRN_					0	0	0			REV__nc|ENSG00000115266|O95996-2|APC2	REV__nc|ENSG00000115266|O95996-2|APC2	MULTI-MSMS	A375_MHC_IP_R2	2	828.8797607421875	1	828.47986	827.472583	-0.78179	-0.0006477	0.50551	0.00041881	-0.27627	-0.00022889	828.4801034413945	98.262	2.5951	99.021	97.775	100.37	0.75977					78	50	2	0	0	0	0.77781	1	37548	37548		2.8892	0.31174	1	8785300	+		58181	17868	42437	42770	56767	56767					0.05194586880179486
VGLGRGRN	8	Unmodified	_VGLGRGRN_					0	0	0			REV__nc|ENSG00000115266|O95996-2|APC2	REV__nc|ENSG00000115266|O95996-2|APC2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	828.47986	827.472583	-0.34755	-0.00028794	0.13667	0.00011323	-0.21088	-0.00017471	828.4798508637749	98.694	2.4867	98.694	97.641	100.13	0	-0.16386	-0.00015899	NaN	2.8892	83	48	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7316300	+		58182	17868	42437	42770							0.05194586880179486
VGLGRSLLW	9	Unmodified	_VGLGRSLLW_					0	0	0			REV__ENSG00000095981|ENST00000437525|KCNK16	REV__ENSG00000095981|ENST00000437525|KCNK16	MULTI-MSMS	A375_MHC_IP_R1	1	501.19830322265625	2	500.800552	999.58655	-0.1759	-8.8091E-05	-3.7752	-0.0018906	-3.9511	-0.0019787	500.7984162298479	127.97	0.50552	127.97	127.87	128.38	0					13	9	2	0	0	0	0.68216	1	49173	49173		8.5933	0	1	5777600	+		58183	17004	42438	42771	56768	56768					0.08674056922416185
VGLGRSLLW	9	Unmodified	_VGLGRSLLW_					0	0	0			REV__ENSG00000095981|ENST00000437525|KCNK16	REV__ENSG00000095981|ENST00000437525|KCNK16	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	500.800552	999.58655	-0.1759	-8.8091E-05	-3.7752	-0.0018906	-3.9511	-0.0019787	500.7984162298479	127.97	0.50552	127.97	127.87	128.38	0	-0.013413	-0.00032923	NaN	8.5933	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5777600	+		58184	17004	42438	42771							0.08674056922416185
VGLGRSLLW	9	Unmodified	_VGLGRSLLW_					0	0	0			REV__ENSG00000095981|ENST00000437525|KCNK16	REV__ENSG00000095981|ENST00000437525|KCNK16	MULTI-MATCH	A375_MHC_IP_R2	2		2	500.800552	999.58655	-0.63334	-0.00031718	-3.3534	-0.0016794	-3.9867	-0.0019966	500.7987959555499	127.73	0.50631	127.99	127.82	128.32	0.26593	0.013413	9.327E-05	NaN	8.5933	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5393900	+		58185	17004	42438	42771							0.08674056922416185
VGLGRVLI	8	Unmodified	_VGLGRVLI_					0	0	0			REV__ENST00000372156.5_1_10:82219211-82222881:+|nuORF	REV__ENST00000372156.5_1_10:82219211-82222881:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	414.1788024902344	2	413.779088	825.543623	0.22159	9.1688E-05	-0.25834	-0.0001069	-0.036752	-1.5207E-05	413.7788826958449	80.095	0.30722	80.095	79.931	80.238	0					8	5	2	0	0	0	0.75322	1	29286	29286		19.439	0	1	920080	+		58186	24059	42439	42772	56769	56769					0.12387286864998259
VGLGRVLI	8	Unmodified	_VGLGRVLI_					0	0	0			REV__ENST00000372156.5_1_10:82219211-82222881:+|nuORF	REV__ENST00000372156.5_1_10:82219211-82222881:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	413.779088	825.543623	0.22159	9.1688E-05	-0.25834	-0.0001069	-0.036752	-1.5207E-05	413.7788826958449	80.095	0.30722	80.095	79.931	80.238	0	0	0	NaN	19.439	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	920080	+		58187	24059	42439	42772							0.12387286864998259
VGLGRWGGV	9	Unmodified	_VGLGRWGGV_					0	0	0		ENST00000350878.8_1_2:102508308-102508344:+|nuORF	ENST00000350878.8_1_2:102508308-102508344:+|nuORF	ENST00000350878.8_1_2:102508308-102508344:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	451.1558532714844	2	450.756144	899.497735	-0.1584	-7.1398E-05	-0.16154	-7.2813E-05	-0.31993	-0.00014421	450.756016729218	74.192	0.50706	74.192	73.995	74.502	0					13	9	2	0	0	0	0.60012	1	27045	27045		24.674	0	1	1763600			58188	10925	42440	42773	56770	56770					0.043966416827515786
VGLGRYGR	8	Unmodified	_VGLGRYGR_					0	0	0			REV__ENST00000489684.2_1_3:49044864-49050780:+|nuORF	REV__ENST00000489684.2_1_3:49044864-49050780:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	439.6536865234375	2	439.253769	876.492984	0.18027	7.9185E-05	-1.0844	-0.00047634	-0.90416	-0.00039715	439.2532192367739	127.69	0.40612	127.69	127.47	127.87	0					13	7	3	0	0	0	0.77702	1	49011	49011		5.7604	0	1	4773300	+		58189	21499	42441	42774	56771	56771					0.049797575399907146
VGLGSVIHS	9	Unmodified	_VGLGSVIHS_					0	0	0		ENST00000334082.10_1_5:78809490-78809553:-|nuORF	ENST00000334082.10_1_5:78809490-78809553:-|nuORF	ENST00000334082.10_1_5:78809490-78809553:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	435.2822570800781	2	434.747985	867.481417	-0.31391	-0.00013647	-1.1767	-0.00051155	-1.4906	-0.00064802	434.7472061530662	40.037	0.40882	40.037	39.794	40.203	0					10	7	2	0	0	0	0.1978	1	13704	13704		38.151	13.477	1	1321600			58190	10790	42442	42775	56772	56772					0.0423751572599258
VGLGTVPVN	9	Unmodified	_VGLGTVPVN_					0	0	0		ENST00000497571.5_1_10:3819016-3819262:-|nuORF	ENST00000497571.5_1_10:3819016-3819262:-|nuORF	ENST00000497571.5_1_10:3819016-3819262:-|nuORF	MSMS	A375_MHC_IP_R2	2	428.3028259277344	2	428.25036	854.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.914	1	56.664	56.164	57.164	0.75015								0	0	0	0.15486	1	21128	21128		11.64	3.7301	1				58191	12747	42443	42776	56773	56773					0.053103998687561216
VGLGVKGW	8	Unmodified	_VGLGVKGW_					0	0	0			REV__nc|ENSG00000172367|Q86UT5-4|NHERF4	REV__nc|ENSG00000172367|Q86UT5-4|NHERF4	MULTI-SECPEP	A375_MHC_IP_R2	2	408.62261962890625	2	408.242338	814.470124	-0.068458	-2.7948E-05	1.0219	0.00041717	0.95341	0.00038922	408.24221852395266	70.87	0.70883	71.604	71.2	71.908	0.73421					19	13	2	0	0	0	0.972	1	26733	26733		9.3474	8.5538	1	2548000	+		58192	27361	42444	42777	56774	56774					0.05546738422515318
VGLGVKGW	8	Unmodified	_VGLGVKGW_					0	0	0			REV__nc|ENSG00000172367|Q86UT5-4|NHERF4	REV__nc|ENSG00000172367|Q86UT5-4|NHERF4	MULTI-MATCH	A375_MHC_IP_R1	1		2	408.242338	814.470124	0.061414	2.5072E-05	1.1755	0.00047987	1.2369	0.00050494	408.2422320512501	71.64	0.45153	71.64	71.465	71.917	0	0.018147	6.7462E-05	NaN	9.3474	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3282900	+		58193	27361	42444	42777							0.05546738422515318
VGLGYHRK	8	Unmodified	_VGLGYHRK_					0	0	0			REV__ENSG00000129667|ENST00000675367|RHBDF2	REV__ENSG00000129667|ENST00000675367|RHBDF2	MSMS	A375_MHC_IP_R1	1	465.1697082519531	2	465.269419	928.524284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.7	1	113.7	113.2	114.2	0								0	0	0	0.16876	1	41680	41680		2.8892	0.31174	1		+		58194	18504	42445	42778	56775	56775					0.05716330574091444
VGLHVENVP	9	Unmodified	_VGLHVENVP_					0	0	0		ENST00000361997.9_1_8:133790074-133829825:+|nuORF	ENST00000361997.9_1_8:133790074-133829825:+|nuORF	ENST00000361997.9_1_8:133790074-133829825:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	482.62615966796875	2	482.266542	962.51853	-0.37618	-0.00018142	-0.55516	-0.00026774	-0.93134	-0.00044915	482.266079354615	55.085	0.50824	55.085	54.822	55.33	0					13	9	2	0	0	0	0.71341	1	19599	19599		18.146	6.5061	1	796140			58195	11056	42446	42779	56776	56776					0.03577187271753246
VGLIYKVR	8	Unmodified	_VGLIYKVR_					0	0	0		nc|ENSG00000167210|Q8IVV2|LOXHD1;ENSG00000167210|ENST00000642948|LOXHD1	nc|ENSG00000167210|Q8IVV2|LOXHD1	nc|ENSG00000167210|Q8IVV2|LOXHD1	MSMS	A375_MHC_IP_R1	1	474.33538818359375	2	474.30547	946.596387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.72	1	131.72	131.22	132.22	0								0	0	0	0.16876	1	50785	50785		6.3541	0	1				58196	7171	42447	42780	56777	56777					0.12095244927797921
VGLIYKVR	8	Unmodified	_VGLIYKVR_					0	0	0		nc|ENSG00000167210|Q8IVV2|LOXHD1;ENSG00000167210|ENST00000642948|LOXHD1	nc|ENSG00000167210|Q8IVV2|LOXHD1	nc|ENSG00000167210|Q8IVV2|LOXHD1	MSMS	A375_MHC_IP_R2	2	474.3351745605469	2	474.30547	946.596387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.61	1	131.79	131.29	132.29	0.18953								0	0	0	0.16876	1	51768	51768		6.3541	0	1				58197	7171	42447	42780	56778	56778					0.12095244927797921
VGLKIALF	8	Unmodified	_VGLKIALF_					0	0	0			REV__PUS7L|p.P329S|1|0.43|ENSG00000129317|chr12:43748535-43748535|G/A|missense_variant	REV__PUS7L|p.P329S|1|0.43|ENSG00000129317|chr12:43748535-43748535|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	431.1832580566406	2	430.783839	859.553125	-0.30019	-0.00012932	-0.52176	-0.00022476	-0.82195	-0.00035408	430.7835950727299	106.96	0.50703	107.72	107.44	107.95	0.75977					16	9	2	0	0	0	0.91495	1	40441	40441		18.135	0	1	2913600	+		58198	18487	42448	42781	56779	56779					0.11773055150501932
VGLKIRRQK	9	Unmodified	_VGLKIRRQK_					0	0	0			REV__nc|ENSG00000151615|Q12837-2|POU4F2	REV__nc|ENSG00000151615|Q12837-2|POU4F2	MSMS	A375_MHC_IP_R1	1	366.63824462890625	3	366.580375	1096.7193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.241	1	53.241	52.741	53.741	0								0	0	0	0.15486	1	18972	18972		1.1933	0.12188	1		+		58199	16939	42449	42782	56780	56780					0.17480501379054658
VGLKKHMEVC	10	Unmodified	_VGLKKHMEVC_					0	0	0		ENSG00000196700|ENST00000369888|ZNF512B	ENSG00000196700|ENST00000369888|ZNF512B	ENSG00000196700|ENST00000369888|ZNF512B	MULTI-SECPEP	A375_MHC_IP_R2	2	571.6627807617188	2	572.304287	1142.59402	-0.30383	-0.00017388	0.97194	0.00055625	0.66811	0.00038236	572.3050899032639	31.142	0.25414	31.861	31.669	31.923	0.71857					8	4	2	0	0	0	0.87163	1	10950	10950		19.257	7.7623	1	1590900			58200	9077	42450	42783	56781	56781					0.028427051361859412
VGLKKHMEVC	10	Unmodified	_VGLKKHMEVC_					0	0	0		ENSG00000196700|ENST00000369888|ZNF512B	ENSG00000196700|ENST00000369888|ZNF512B	ENSG00000196700|ENST00000369888|ZNF512B	MULTI-MATCH	A375_MHC_IP_R1	1		2	572.304287	1142.59402	-0.28571	-0.00016351	1.0193	0.00058337	0.73363	0.00041986	572.3049941711287	31.973	0.35825	31.973	31.769	32.127	0	0.056197	5.7185E-06	NaN	13.906	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1728000			58201	9077	42450	42783							0.028427051361859412
VGLKKRVVQV	10	Unmodified	_VGLKKRVVQV_					0	0	0		nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4;ZFHX4|p.E2641K|1|0.14|ENSG00000091656|chr8:76854842-76854842|G/A|missense_variant;ENSG00000136367|ENST00000419474|ZFHX2;nc|ENSG00000140836|Q15911-2|ZFHX3;ENSG00000140836|ENST00000268489|ZFHX3	nc|ENSG00000091656|Q86UP3|ZFHX4;ENSG00000136367|ENST00000419474|ZFHX2;nc|ENSG00000140836|Q15911-2|ZFHX3	ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MSMS	A375_MHC_IP_R1	1	1124.6171875	1	1125.74664	1124.73936	0.089952	0.00010126	-1.5223	-0.0017137	-1.4323	-0.0016124	1126.7465380658225	103.67	0.25376	103.67	103.52	103.78	0					6	4	2	0	0	0	0.72645	1	38085	38085		0.45834	0	1	1560700			58202	4781;1985;5187	42451	42784	56782	56782					0.18198252319007224
VGLKKSLWLD	10	Unmodified	_VGLKKSLWLD_					0	0	0			REV__ENSG00000205808|ENST00000381883|PLPP6	REV__ENSG00000205808|ENST00000381883|PLPP6	MULTI-SECPEP	A375_MHC_IP_R1	1	387.1502380371094	3	386.900891	1157.68084	0.31288	0.00012106	0.014452	5.5913E-06	0.32734	0.00012665	386.90102189125696	55.94	0.40551	55.94	55.687	56.092	0					15	7	3	0	0	0	0.91643	1	19939	19939		16.566	6.2506	1	1181200	+		58203	22585	42452	42785	56783	56783					0.10831150953913493
VGLKKSLWLD	10	Unmodified	_VGLKKSLWLD_					0	0	0			REV__ENSG00000205808|ENST00000381883|PLPP6	REV__ENSG00000205808|ENST00000381883|PLPP6	MULTI-SECPEP	A375_MHC_IP_R2	2	387.1496887207031	3	386.900891	1157.68084	-0.29385	-0.00011369	0.43397	0.0001679	0.14012	5.4214E-05	387.23541373091336	54.974	0.40777	55.725	55.422	55.83	0.75075					12	7	2	0	0	0	0.92832	1	20653	20653		12.175	1.8595	1	1331300	+		58204	22585	42452	42785	56784	56784					0.10831150953913493
VGLKQLISC	9	Unmodified	_VGLKQLISC_					0	0	0		ENSG00000171853|ENST00000324266|TRAPPC12	ENSG00000171853|ENST00000324266|TRAPPC12	ENSG00000171853|ENST00000324266|TRAPPC12	MULTI-SECPEP	A375_MHC_IP_R2	2	959.8010864257812	1	960.554664	959.547388	-0.04196	-4.0304E-05	2.9134	0.0027985	2.8715	0.0027582	960.5597560425267	119.2	0.20587	119.73	119.58	119.79	0.5321					5	3	2	0	0	0	0.80005	1	45368	45368		4.756	0.42677	1	10000000			58205	7650	42453	42786	56785	56785					0.06599588576534643
VGLKYDEIC	9	Unmodified	_VGLKYDEIC_					0	0	0			REV__nc|ENSG00000152092|O14525-3|ASTN1	REV__nc|ENSG00000152092|O14525-3|ASTN1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.9859008789062	2	520.260068	1038.50558	-0.63897	-0.00033243	-0.3818	-0.00019863	-1.0208	-0.00053107	520.2597424195501	78.058	0.35706	78.801	78.572	78.929	0.74293					11	6	2	0	0	0	0.71541	1	29577	29577		7.2892	0.56607	1	1457100	+		58206	19790	42454	42787	56786	56786					-0.012130119026551256
VGLLAVPLL	9	Unmodified	_VGLLAVPLL_					0	0	0		ENSG00000106484|ENST00000223215|MEST;nc|ENSG00000106484|Q5EB52-3|MEST;nc|ENSG00000106484|Q5EB52-2|MEST	ENSG00000106484|ENST00000223215|MEST	ENSG00000106484|ENST00000223215|MEST	MULTI-MSMS	A375_MHC_IP_R1	1	894.6863403320312	1	894.602266	893.59499	-0.4437	-0.00039693	0.33824	0.00030259	-0.10546	-9.4345E-05	894.6023373574119	132.46	0.30624	132.46	132.38	132.69	0					6	5	2	0	0	0	0.60623	1	51134	51134		14.582	5.2343	1	2471200			58207	2695	42455	42788	56787	56787					0.14393610839044868
VGLLAVPLL	9	Unmodified	_VGLLAVPLL_					0	0	0		ENSG00000106484|ENST00000223215|MEST;nc|ENSG00000106484|Q5EB52-3|MEST;nc|ENSG00000106484|Q5EB52-2|MEST	ENSG00000106484|ENST00000223215|MEST	ENSG00000106484|ENST00000223215|MEST	MULTI-MATCH	A375_MHC_IP_R2	2		1	894.602266	893.59499	-0.41202	-0.0003686	0.038127	3.4109E-05	-0.3739	-0.00033449	894.6024434868838	132.29	0.25554	132.48	132.3	132.56	0.18953	0.010378	-0.00010596	NaN	14.582	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3504100			58208	2695	42455	42788							0.14393610839044868
VGLLFVLKL	9	Unmodified	_VGLLFVLKL_					0	0	0			REV__nc|ENSG00000176383|Q9C0J1-2|B3GNT4	REV__nc|ENSG00000176383|Q9C0J1-2|B3GNT4	MSMS	A375_MHC_IP_R2	2	501.19207763671875	2	501.341521	1000.66849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.051	1	29.749	29.249	30.249	0.69872								0	0	0	0.15486	1	10109	10109		4.756	0	1		+		58209	21401	42456	42789	56788	56788					0.16818159281490352
VGLLFVRRV	9	Unmodified	_VGLLFVRRV_					0	0	0			REV__ENSG00000237172|ENST00000449549|B3GNT9	REV__ENSG00000237172|ENST00000449549|B3GNT9	MULTI-SECPEP	A375_MHC_IP_R2	2	530.1787719726562	2	529.845294	1057.67603	-0.48228	-0.00025554	0.30331	0.00016071	-0.17897	-9.4828E-05	530.3474679781426	79.308	0.35286	80.052	79.846	80.199	0.74474					9	6	2	0	0	0	0.77834	1	30098	30098		4.756	0	1	2269000	+		58210	22762	42457	42790	56789	56789					0.14950311601796784
VGLLKDMSPLS	11	Unmodified	_VGLLKDMSPLS_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MSMS	A375_MHC_IP_R2	2	580.65185546875	2	580.323199	1158.63185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.12	1	137.24	136.74	137.74	0.11134								0	0	0	0.16297	1	53832	53832		3.2813	0	1				58211	1208	42458	42791	56790	56790					0.05887494602620791
VGLLLLLLLRP	11	Unmodified	_VGLLLLLLLRP_					0	0	0			REV__NGFR|p.D249Afs*66|1|0.26|ENSG00000064300|chr17:49510589-49510593|ACAAC/-|frameshift_variant	REV__NGFR|p.D249Afs*66|1|0.26|ENSG00000064300|chr17:49510589-49510593|ACAAC/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	610.698486328125	2	610.428659	1218.84277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.957	1	97.957	97.457	98.457	0								0	0	0	0.16353	1	35990	35990		0.35063	0.35063	1		+		58212	27600	42459	42792	56791	56791					0.24209739706839173
VGLLLLVVAVF	11	Unmodified	_VGLLLLVVAVF_					0	0	0		ENSG00000187244|ENST00000270233|BCAM	ENSG00000187244|ENST00000270233|BCAM	ENSG00000187244|ENST00000270233|BCAM	MSMS	A375_MHC_IP_R1	1	572.009033203125	2	571.88101	1141.74747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.685	1	91.685	91.185	92.185	0								0	0	0	0.1629	1	33687	33687		3.5965	0	1				58213	8816	42460	42793	56792	56792					0.18226386515789272
VGLLRWWRQRL	11	Unmodified	_VGLLRWWRQRL_					0	0	0		ENST00000249356.3_1_7:108210198-108210453:+|nuORF	ENST00000249356.3_1_7:108210198-108210453:+|nuORF	ENST00000249356.3_1_7:108210198-108210453:+|nuORF	MSMS	A375_MHC_IP_R1	1	742.0079345703125	2	741.943862	1481.87317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.43	1	103.43	102.93	103.93	0								0	0	0	0.16353	1	37992	37992		0.35063	0.043601	1				58214	10196	42461	42794	56793	56793					0.15150911144564816
VGLPAAGKTTW	11	Unmodified	_VGLPAAGKTTW_					0	0	0		nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	MULTI-SECPEP	A375_MHC_IP_R1	1	550.7448120117188	2	550.808574	1099.60259	-0.44486	-0.00024503	0.042888	2.3623E-05	-0.40197	-0.00022141	550.8086094750515	62.327	1.4842	62.327	61.943	63.427	0					84	28	4	0	0	0	0.041592	1	22425	22425		92.201	42.268	1	123560000			58215	2589	42462	42795	56794	56794					0.056777183686335775
VGLPAAGKTTW	11	Unmodified	_VGLPAAGKTTW_					0	0	0		nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	MULTI-MSMS	A375_MHC_IP_R2	2	550.7444458007812	2	550.808574	1099.60259	-1.1009	-0.00060639	-0.016945	-9.3335E-06	-1.1178	-0.00061572	550.8085278786386	61.574	1.517	62.319	61.919	63.436	0.74503					82	29	4	0	0	0	0.00072293	1	23369	23369		107.56	67.324	1	115960000			58216	2589	42462	42795	56795	56795					0.056777183686335775
VGLPPGKA	8	Unmodified	_VGLPPGKA_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	A375_MHC_IP_R2	2	738.849853515625	1	738.450851	737.443575	-0.83218	-0.00061453	0.15243	0.00011256	-0.67975	-0.00050196	738.450860477502	48.448	0.8112	49.205	48.879	49.69	0.75737					24	15	2	0	0	0	0.77839	1	18323	18323		0.79363	0	1	10981000			58217	7040	42463	42796	56796	56796					0.06435049531182813
VGLPPGKA	8	Unmodified	_VGLPPGKA_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MATCH	A375_MHC_IP_R1	1		1	738.450851	737.443575	-0.040353	-2.9799E-05	-0.29821	-0.00022022	-0.33857	-0.00025001	738.4504365103319	49.194	0.70933	49.194	48.882	49.591	0	-0.0057427	-0.00016897	NaN	0.79363	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8156500			58218	7040	42463	42796							0.06435049531182813
VGLQESLKKV	10	Unmodified	_VGLQESLKKV_					0	0	0			REV__ENSG00000198707|ENST00000552810|CEP290	REV__ENSG00000198707|ENST00000552810|CEP290	MULTI-MSMS	A375_MHC_IP_R1	1	368.2853088378906	3	367.560646	1099.66011	0.1605	5.8993E-05	0.34222	0.00012579	0.50272	0.00018478	367.5607570866862	19.602	0.56	19.602	19.368	19.928	0					40	10	5	0	0	0	0.63381	1	5018	5018		18.34	2.0652	1	174140000	+		58219	22399	42464	42797	56797	56797					0.11426560574227551
VGLQIISATTL	11	Unmodified	_VGLQIISATTL_					0	0	0			REV__ENSG00000197106|ENST00000331565|SLC6A17	REV__ENSG00000197106|ENST00000331565|SLC6A17	MULTI-MSMS	A375_MHC_IP_R1	1	372.60888671875	3	372.560535	1114.65977	0.3436	0.00012801	-0.22304	-8.3096E-05	0.12056	4.4914E-05	372.56042634439274	20.048	0.71026	20.048	19.674	20.384	0					32	13	3	0	0	0	0.73795	1	5183	5183		1.3296	0.11481	1	7964900	+		58220	22254	42465	42798	56798	56798					0.10703140854388948
VGLQIRDT	8	Unmodified	_VGLQIRDT_					0	0	0		ENST00000506043.1_1_X:77218070-77218340:+|nuORF	ENST00000506043.1_1_X:77218070-77218340:+|nuORF	ENST00000506043.1_1_X:77218070-77218340:+|nuORF	MSMS	A375_MHC_IP_R2	2	451.1737060546875	2	451.258717	900.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.695	1	39.469	38.969	39.969	0.77451								0	0	0	0.16876	1	14260	14260		7.2892	0.56607	1				58221	12849	42466	42799	56799	56799					0.048649007547169276
VGLQPQRLV	9	Unmodified	_VGLQPQRLV_					0	0	0			REV__ENSG00000143476|ENST00000366991|DTL	REV__ENSG00000143476|ENST00000366991|DTL	MULTI-SECPEP	A375_MHC_IP_R2	2	505.6689758300781	2	505.311284	1008.60801	-0.78683	-0.00039759	-1.7934	-0.00090621	-2.5802	-0.0013038	505.3117754007082	55.495	0.40523	56.245	56.034	56.439	0.75075					16	7	3	0	0	0	0.77834	1	20995	20995		2.0598	1.659	1	1059800	+		58222	19360	42467	42800	56800	56800					0.10405441951127159
VGLQVAGF	8	Unmodified	_VGLQVAGF_					0	0	0		ENST00000533764.5_1_8:145690205-145690799:-|nuORF	ENST00000533764.5_1_8:145690205-145690799:-|nuORF	ENST00000533764.5_1_8:145690205-145690799:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	396.1262512207031	2	395.726521	789.438489	-0.43132	-0.00017069	0.52167	0.00020644	0.090351	3.5754E-05	395.7266471020949	60.726	1.5204	61.471	60.801	62.322	0.74503					56	29	3	0	0	0	0.972	1	23117	23117		2.8892	0	1	5113200			58223	13204	42468	42801	56801	56801					0.03534745668571304
VGLRGSGLRGL	11	Unmodified	_VGLRGSGLRGL_					0	0	0		nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	MULTI-MSMS	A375_MHC_IP_R2	2	362.62396240234375	3	362.224368	1083.65128	-0.40853	-0.00014798	-0.15868	-5.7476E-05	-0.5672	-0.00020546	362.2242872736351	41.175	0.40639	41.95	41.692	42.098	0.77451					11	7	2	0	0	0	0.63737	1	15313	15313		16.275	0	1	2272200			58224	6489	42469	42802	56802	56802					0.11279631728439199
VGLRRLDE	8	Unmodified	_VGLRRLDE_					0	0	0			REV__nc|ENSG00000145242|P54756-3|EPHA5	REV__nc|ENSG00000145242|P54756-3|EPHA5	MULTI-MSMS	A375_MHC_IP_R2	2	479.67706298828125	2	479.277441	956.540328	-0.44288	-0.00021226	0.18313	8.7771E-05	-0.25974	-0.00012449	479.27740587608423	109.27	5.8121	110.01	107.38	113.19	0.74683					289	113	4	0	0	0	0.7779	1	42255	42255		2.5775	0	1	18458000	+		58225	19468	42470	42803	56803	56803					0.060319920203255606
VGLRRRSRRF	10	Unmodified	_VGLRRRSRRF_					0	0	0		ENST00000354300.4_1_12:111021038-111021119:-|nuORF	ENST00000354300.4_1_12:111021038-111021119:-|nuORF	ENST00000354300.4_1_12:111021038-111021119:-|nuORF	MSMS	A375_MHC_IP_R2	2	651.98046875	2	651.902528	1301.7905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.882	1	69.617	69.117	70.117	0.73511								0	0	0	0.15628	1	26100	26100		0.45834	0.10771	1				58226	10937	42471	42804	56804	56804					0.1516801413642952
VGLSATWESKV	11	Unmodified	_VGLSATWESKV_					0	0	0		ENST00000483505.6_1_17:26686386-26687603:+|nuORF	ENST00000483505.6_1_17:26686386-26687603:+|nuORF	ENST00000483505.6_1_17:26686386-26687603:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	392.9181823730469	3	392.880156	1175.61864	-0.1624	-6.3804E-05	1.2126	0.0004764	1.0502	0.0004126	393.215016858545	27.408	0.8669	28.086	27.484	28.351	0.67857					29	16	3	0	0	0	0.73354	1	9465	9465		5.5233	0.47577	1	2594500			58227	12544	42472	42805	56805	56805					0.037853798148944406
VGLSDISITLF	11	Unmodified	_VGLSDISITLF_					0	0	0		ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	MULTI-MSMS	A375_MHC_IP_R1	1	583.2298583984375	2	582.829172	1163.64379	-0.43362	-0.00025273	1.0362	0.00060393	0.60258	0.0003512	582.829842194911	84.739	0.86928	84.739	84.442	85.311	0					39	16	4	0	0	0	0.72565	1	31003	31003		13.042	0	1	9746300			58228	7874	42473	42806	56806	56806					0.06851434617465202
VGLSKENLLL	10	Unmodified	_VGLSKENLLL_					0	0	0		nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	MULTI-MSMS	A375_MHC_IP_R1	1	362.95721435546875	3	362.557013	1084.64921	0.70573	0.00025587	0.3772	0.00013676	1.0829	0.00039262	362.5571054989782	44.869	1.9708	44.869	44.575	46.545	0					74	38	4	0	0	0	0.70312	1	15906	15906		10.899	10.899	1	26650000			58229	5547	42474	42807	56807	56807					0.11027158199954101
VGLTIFVLS	9	Unmodified	_VGLTIFVLS_					0	0	0		nc|ENSG00000164054|Q8N114-2|SHISA5;nc|ENSG00000164054|Q8N114-5|SHISA5;ENSG00000164054|ENST00000296444|SHISA5;ENST00000460758.1_1_3:48511100-48514492:-|nuORF;nc|ENSG00000164054|Q8N114-4|SHISA5;ENST00000466424.5_1_3:48509548-48511229:-|nuORF;nc|ENSG00000164054|Q8N114-3|SHISA5;ENST00000494854.5_1_3:48510739-48514492:-|nuORF;ENST00000465449.5_1_3:48510508-48514931:-|nuORF	nc|ENSG00000164054|Q8N114-2|SHISA5	nc|ENSG00000164054|Q8N114-2|SHISA5	MSMS	A375_MHC_IP_R1	1	474.69073486328125	2	474.791861	947.569169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.66	1	109.66	109.16	110.16	0								0	0	0	0.15486	1	40219	40219		2.0598	0	1				58230	6765	42475	42808	56808	56808					0.09328716596769482
VGLTRILPHL	10	Unmodified	_VGLTRILPHL_					0	0	0		ENSG00000184545|ENST00000397374|DUSP8	ENSG00000184545|ENST00000397374|DUSP8	ENSG00000184545|ENST00000397374|DUSP8	MULTI-MSMS	A375_MHC_IP_R1	1	373.4803466796875	3	373.572998	1117.69716	0.7206	0.00026919	-0.17033	-6.3629E-05	0.55027	0.00020557	373.57302245997823	48.452	0.65798	48.452	48.173	48.831	0					20	12	2	0	0	0	0.72335	1	17213	17213		0.77653	0	1	2180400			58231	8593	42476	42809	56809	56809					0.1430227691064374
VGLTRPQQT	9	Unmodified	_VGLTRPQQT_					0	0	0			REV__ENST00000343200.9_2_5:82767617-82767806:+|nuORF	REV__ENST00000343200.9_2_5:82767617-82767806:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	500.68182373046875	2	500.282723	998.550893	-0.95353	-0.00047703	1.6415	0.0008212	0.68794	0.00034416	500.2826524449361	123.31	1.8151	123.31	122.83	124.65	0					77	35	3	0	0	0	0.73415	1	46488	46488		3.9444	0	1	34907000	+		58232	23750	42477	42810	56810	56810					0.051559746747557256
VGLTRRGQ	8	Unmodified	_VGLTRRGQ_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-4|FN1;FN1|p.S1621Rfs*10|1|0.25|ENSG00000115414|chr2:215382240-215382241|-/CT|frameshift_variant	ENSG00000115414|ENST00000354785|FN1;FN1|p.S1621Rfs*10|1|0.25|ENSG00000115414|chr2:215382240-215382241|-/CT|frameshift_variant	FN1|p.S1621Rfs*10|1|0.25|ENSG00000115414|chr2:215382240-215382241|-/CT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	444.1646423339844	2	443.764501	885.514448	-0.12894	-5.7218E-05	0.6696	0.00029715	0.54066	0.00023993	443.7646760596772	99.823	1.0157	100.59	100.02	101.03	0.76278					26	19	2	0	0	0	0.972	1	37920	37920		2.5775	0	1	1163600			58233	3305;14009	42478	42811	56811	56811					0.06711142568701689
VGLTTAGRR	9	Unmodified	_VGLTTAGRR_					0	0	0			REV__ENSG00000066735|ENST00000423312|KIF26A	REV__ENSG00000066735|ENST00000423312|KIF26A	MULTI-MSMS	A375_MHC_IP_R2	2	466.177734375	2	465.777608	929.540663	-0.4349	-0.00020257	0.82797	0.00038565	0.39307	0.00018308	465.7777711190306	112.64	1.2275	113.36	113.07	114.3	0.72459					46	23	4	0	0	0	0.72985	1	42658	42658		4.3292	1.7518	1	7580700	+		58234	16522	42479	42812	56812	56812					0.07307411740180214
VGLTWKNQNI	10	Unmodified	_VGLTWKNQNI_					0	0	0			REV__ENSG00000171659|ENST00000378142|GPR34	REV__ENSG00000171659|ENST00000378142|GPR34	MULTI-MSMS	A375_MHC_IP_R1	1	587.2249145507812	2	586.824755	1171.63496	-0.1858	-0.00010903	-0.36011	-0.00021132	-0.54591	-0.00032035	586.8246030985856	55.963	0.55751	55.963	55.687	56.244	0					31	10	4	0	0	0	0.62155	1	20020	20020		19.257	3.4098	1	13967000	+		58235	21085	42480	42813	56813	56813					0.056005057716674855
VGLTWKNQNI	10	Unmodified	_VGLTWKNQNI_					0	0	0			REV__ENSG00000171659|ENST00000378142|GPR34	REV__ENSG00000171659|ENST00000378142|GPR34	MULTI-SECPEP	A375_MHC_IP_R2	2	587.2246704101562	2	586.824755	1171.63496	-0.66675	-0.00039127	0.032193	1.8892E-05	-0.63456	-0.00037238	586.8247093799388	55.261	0.65978	56.012	55.678	56.337	0.75075					29	12	4	0	0	0	0.87163	1	20839	20839		19.257	10.512	1	11079000	+		58236	21085	42480	42813	56814	56814					0.056005057716674855
VGLTWKNQNI	10	Unmodified	_VGLTWKNQNI_					0	0	0			REV__ENSG00000171659|ENST00000378142|GPR34	REV__ENSG00000171659|ENST00000378142|GPR34	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	586.824755	1171.63496	-0.1858	-0.00010903	-0.36011	-0.00021132	-0.54591	-0.00032035	586.8246030985856	55.963	0.55751	55.963	55.687	56.244	0	-0.02468	-0.00024105	NaN	19.257	31	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13967000	+		58237	21085	42480	42813							0.056005057716674855
VGLVQRKIF	9	Unmodified	_VGLVQRKIF_					0	0	0		ENST00000505514.5_1_4:76419354-76434388:-|nuORF	ENST00000505514.5_1_4:76419354-76434388:-|nuORF	ENST00000505514.5_1_4:76419354-76434388:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	353.9171447753906	3	353.89396	1058.66005	-0.49864	-0.00017646	0.053266	1.885E-05	-0.44537	-0.00015761	354.2282814188318	24.188	0.40651	24.831	24.653	25.06	0.64368					10	7	2	0	0	0	0.68705	1	7895	7895		8.1555	2.7528	1	4019300			58238	12843	42481	42814	56815	56815					0.13306605364869029
VGLVQRKIF	9	Unmodified	_VGLVQRKIF_					0	0	0		ENST00000505514.5_1_4:76419354-76434388:-|nuORF	ENST00000505514.5_1_4:76419354-76434388:-|nuORF	ENST00000505514.5_1_4:76419354-76434388:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	353.89396	1058.66005	-0.49864	-0.00017646	0.053266	1.885E-05	-0.44537	-0.00015761	354.2282814188318	24.188	0.40651	24.831	24.653	25.06	0.64368	-0.025456	6.4005E-05	NaN	8.1555	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4019300			58239	12843	42481	42814							0.13306605364869029
VGLVRGRL	8	Unmodified	_VGLVRGRL_					0	0	0			REV__ENSG00000130589|ENST00000467148|HELZ2	REV__ENSG00000130589|ENST00000467148|HELZ2	MSMS	A375_MHC_IP_R1	1	435.2791442871094	2	435.287611	868.56067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.306	1	35.306	34.806	35.806	0								0	0	0	0.16876	1	11734	11734		0.79363	0	1		+		58240	18549	42482	42815	56816	56816					0.12113207470804355
VGLVWLGG	8	Unmodified	_VGLVWLGG_					0	0	0			REV__HERVE-int_dup200|chr12:9406305-9406453:+|4.674180392823972|0.1638539068309026|4.83|464.0|3|3|sense	REV__HERVE-int_dup200|chr12:9406305-9406453:+|4.674180392823972|0.1638539068309026|4.83|464.0|3|3|sense	MULTI-MSMS	A375_MHC_IP_R2	2	401.13720703125	2	400.736889	799.459225	0.064224	2.5737E-05	0.75011	0.0003006	0.81434	0.00032633	400.7371393607779	91.311	0.45514	92.046	91.767	92.222	0.7345					19	8	3	0	0	0	0.77839	1	34714	34714		0.79363	0	1	5801000	+		58241	26735	42483	42816	56817	56817					0.051473360482305
VGLVWLGG	8	Unmodified	_VGLVWLGG_					0	0	0			REV__HERVE-int_dup200|chr12:9406305-9406453:+|4.674180392823972|0.1638539068309026|4.83|464.0|3|3|sense	REV__HERVE-int_dup200|chr12:9406305-9406453:+|4.674180392823972|0.1638539068309026|4.83|464.0|3|3|sense	MULTI-MSMS	A375_MHC_IP_R2	2	401.136962890625	2	400.736889	799.459225	0.055545	2.2259E-05	0.65555	0.0002627	0.71109	0.00028496	400.7370606254881	91.92	0.70822	92.659	92.329	93.038	0.73902					33	13	4	0	0	0	0.77839	1	34924	34924		0.79363	0	1	18184000	+		58242	26735	42483	42816	56818	56818					0.051473360482305
VGLVWLGG	8	Unmodified	_VGLVWLGG_					0	0	0			REV__HERVE-int_dup200|chr12:9406305-9406453:+|4.674180392823972|0.1638539068309026|4.83|464.0|3|3|sense	REV__HERVE-int_dup200|chr12:9406305-9406453:+|4.674180392823972|0.1638539068309026|4.83|464.0|3|3|sense	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	400.736889	799.459225	0.064224	2.5737E-05	0.75011	0.0003006	0.81434	0.00032633	400.7371393607779	91.311	0.45514	92.046	91.767	92.222	0.7345	-0.017506	2.4232E-05	NaN	0.79363	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5801000	+		58243	26735	42483	42816							0.051473360482305
VGLWRKRKFAK	11	Unmodified	_VGLWRKRKFAK_					0	0	0		ENST00000455089.5_1_7:55087016-55210125:+|nuORF	ENST00000455089.5_1_7:55087016-55210125:+|nuORF	ENST00000455089.5_1_7:55087016-55210125:+|nuORF	MSMS	A375_MHC_IP_R1	1	694.9337768554688	2	694.935506	1387.85646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.567	1	54.567	54.067	55.067	0								0	0	0	0.16302	1	19491	19491		2.9952	1.6657	1				58244	12113	42484	42817	56819	56819					0.17804410258622738
VGMGMMNF	8	Unmodified	_VGMGMMNF_					0	0	0		ADGRB3|p.D691N|1|0.36|ENSG00000135298|chr6:69018463-69018463|G/A|missense_variant	ADGRB3|p.D691N|1|0.36|ENSG00000135298|chr6:69018463-69018463|G/A|missense_variant	ADGRB3|p.D691N|1|0.36|ENSG00000135298|chr6:69018463-69018463|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	443.62615966796875	2	443.684627	885.354701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.689	1	33.426	32.926	33.926	0.73692								0	0	0	0.16876	1	11658	11658		2.8892	0	1				58245	66	42485	42818	56820	56820					-0.0925619308665091
VGMMVRCCRTY	11	Unmodified	_VGMMVRCCRTY_					0	0	0		ENST00000529624.5_3_15:28877823-28916776:+|nuORF;ENST00000528584.5_1_15:28900509-28916776:+|nuORF;ENST00000530420.5_1_15:28900570-28916776:+|nuORF	ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENST00000529624.5_3_15:28877823-28916776:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	660.197509765625	2	659.797988	1317.58142	-0.78651	-0.00051894	-0.58529	-0.00038617	-1.3718	-0.00090511	659.7976843503764	43.159	0.55743	43.931	43.674	44.231	0.7724					15	10	2	0	0	0	0.72728	1	16118	16118		11.495	2.1116	1	2679200			58246	13133	42486	42819	56821	56821					-0.06466397590020279
VGMYLAQNY	9	Unmodified	_VGMYLAQNY_					0	0	0		ENST00000515197.2_1_7:135347327-135357590:+|nuORF;ENSG00000243317|ENST00000507606|STMP1	ENST00000515197.2_1_7:135347327-135357590:+|nuORF	ENST00000515197.2_1_7:135347327-135357590:+|nuORF	MSMS	A375_MHC_IP_R1	1	529.6691284179688	2	529.75241	1057.49027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.437	1	56.437	55.937	56.937	0								0	0	0	0.15486	1	20218	20218		13.508	3.3245	1				58247	9808	42487	42820	56822	56822					-0.036178786998334544
VGNGSCIT	8	Unmodified	_VGNGSCIT_					0	0	0			REV__nc|ENSG00000008277|Q9P0K1-4|ADAM22	REV__nc|ENSG00000008277|Q9P0K1-4|ADAM22	MULTI-MSMS	A375_MHC_IP_R2	2	750.7452392578125	1	750.345065	749.337789	-0.94899	-0.00071207	0.88319	0.00066269	-0.065807	-4.9378E-05	750.3456661913963	106.98	0.60849	107.74	107.44	108.05	0.758					17	11	2	0	0	0	0.75805	1	40464	40464		18.135	1.1927	1	2194400	+		58248	16169	42488	42821	56823	56823					-0.04690654376611292
VGNGSCIT	8	Unmodified	_VGNGSCIT_					0	0	0			REV__nc|ENSG00000008277|Q9P0K1-4|ADAM22	REV__nc|ENSG00000008277|Q9P0K1-4|ADAM22	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	750.345065	749.337789	-0.94899	-0.00071207	0.88319	0.00066269	-0.065807	-4.9378E-05	750.3456661913963	106.98	0.60849	107.74	107.44	108.05	0.758	0.039209	1.2653E-05	NaN	18.135	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2194400	+		58249	16169	42488	42821							-0.04690654376611292
VGNLKFSI	8	Unmodified	_VGNLKFSI_					0	0	0		tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1	tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1	tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	438.9300537109375	2	439.260728	876.506903	-0.3971	-0.00017443	0.2344	0.00010296	-0.1627	-7.1468E-05	439.2607299272416	27.967	0.30529	28.646	28.502	28.808	0.67857					7	5	2	0	0	0	0.96266	1	9615	9615		11.64	4.9171	1	1076900			58250	29422	42489	42822	56824	56824					0.06370990248422004
VGNLPEAQ	8	Unmodified	_VGNLPEAQ_					0	0	0		nc|ENSG00000185437|P55822-2|SH3BGR;ENSG00000185437|ENST00000333634|SH3BGR;nc|ENSG00000185437|P55822|SH3BGR	nc|ENSG00000185437|P55822-2|SH3BGR	nc|ENSG00000185437|P55822-2|SH3BGR	MULTI-SECPEP	A375_MHC_IP_R1	1	414.6003723144531	2	414.216517	826.418482	0.72818	0.00030162	-0.7368	-0.0003052	-0.0086257	-3.5729E-06	414.2161991673852	38.857	0.30378	38.857	38.679	38.983	0					7	5	2	0	0	0	0.96266	1	13212	13212		16.942	5.302	1	1081700			58251	8666	42490	42823	56825	56825					-0.0016705006205484096
VGNLSPVDFLK	11	Unmodified	_VGNLSPVDFLK_					0	0	0			REV__nc|ENSG00000114107|Q8NHQ1-2|CEP70	REV__nc|ENSG00000114107|Q8NHQ1-2|CEP70	MULTI-MSMS	A375_MHC_IP_R1	1	396.9279479980469	3	396.892284	1187.65502	0.0001656	6.5724E-08	-1.3157	-0.00052217	-1.3155	-0.00052211	396.8914221372022	23.036	0.85946	23.036	22.623	23.483	0					41	16	4	0	0	0	0.67398	1	6403	6403		17.572	1.2974	1	16010000	+		58252	17812	42491	42824	56826	56826					0.06870256711590628
VGNPAAEA	8	Unmodified	_VGNPAAEA_					0	0	0		ENST00000318988.10_1_17:7155218-7155278:-|nuORF	ENST00000318988.10_1_17:7155218-7155278:-|nuORF	ENST00000318988.10_1_17:7155218-7155278:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	365.2818908691406	2	364.682311	727.350068	0.33447	0.00012197	-1.98	-0.00072206	-1.6455	-0.00060009	364.6818957996899	62.561	0.25649	62.561	62.403	62.66	0					6	4	2	0	0	0	0.972	1	22581	22581		5.7604	3.1829	1	401010			58253	10679	42492	42825	56827	56827					-0.024512946419122272
VGNQWEEER	9	Unmodified	_VGNQWEEER_					0	0	0			REV__ENSG00000136237|ENST00000665637|RAPGEF5	REV__ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-SECPEP	A375_MHC_IP_R1	1	574.1622924804688	2	573.762352	1145.51015	0.028696	1.6465E-05	1.5698	0.00090067	1.5985	0.00091714	573.7622933003998	21.434	0.30473	21.434	21.301	21.606	0					19	5	4	0	0	0	0.56537	1	5660	5660		22.736	9.6938	1	5390100	+		58254	18923	42493	42826	56828	56828					-0.0567841143554233
VGNRIKFVI	9	Unmodified	_VGNRIKFVI_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-SECPEP	A375_MHC_IP_R1	1	523.7295532226562	2	523.329476	1044.6444	-0.46301	-0.00024231	0.26196	0.00013709	-0.20105	-0.00010522	523.3295630134203	52.245	0.50757	52.245	51.982	52.49	0					15	9	3	0	0	0	0.69504	1	18596	18596		12.532	0	1	1869600			58255	9951	42494	42827	56829	56829					0.12386318847848088
VGNRQIQIK	9	Unmodified	_VGNRQIQIK_					0	0	0		ENST00000565516.5_1_16:71898855-71913932:-|nuORF;ENST00000563827.5_1_16:71901919-71917343:-|nuORF;ENST00000565601.5_2_16:71901919-71917197:-|nuORF;ENST00000568322.5_1_16:71901919-71918589:-|nuORF;ENST00000562985.5_1_16:71901919-71918510:-|nuORF;ENST00000568961.5_1_16:71901919-71917908:-|nuORF;ENST00000313565.10_1_16:71898855-71918020:-|nuORF	ENST00000565516.5_1_16:71898855-71913932:-|nuORF	ENST00000565516.5_1_16:71898855-71913932:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	527.7362670898438	2	528.31964	1054.62473	-0.97426	-0.00051472	-0.077684	-4.1042E-05	-1.0519	-0.00055576	528.3194271565545	29.428	0.20279	29.428	29.353	29.555	0					5	3	2	0	0	0	0.76827	1	9276	9276		10.824	10.824	1	16355000			58256	10644	42495	42828	56830	56830					0.09959942837076596
VGNTRSLSW	9	Unmodified	_VGNTRSLSW_					0	0	0			REV__ENSG00000162849|ENST00000407071|KIF26B	REV__ENSG00000162849|ENST00000407071|KIF26B	MULTI-SECPEP	A375_MHC_IP_R1	1	510.6661682128906	2	510.267073	1018.51959	-0.39411	-0.0002011	0.32085	0.00016372	-0.073259	-3.7382E-05	510.2670433760607	55.661	0.71137	55.661	55.381	56.092	0					19	13	2	0	0	0	0.3213	1	19931	19931		46.021	1.6139	1	3180400	+		58257	20311	42496	42829	56831	56831					0.011074016406610099
VGNVTLQPER	10	Unmodified	_VGNVTLQPER_					0	0	0		nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1;ENST00000532415.5_1_16:18480742-18495490:-|nuORF;ENST00000532739.1_1_16:16450692-16458759:+|nuORF	nc|ENSG00000008710|P98161-2|PKD1	nc|ENSG00000008710|P98161-2|PKD1	MULTI-MSMS	A375_MHC_IP_R2	2	371.5743103027344	3	371.540134	1111.59857	0.25044	9.3048E-05	3.5029	0.0013015	3.7534	0.0013945	371.5413025734186	39.132	0.3585	39.907	39.658	40.016	0.77451					9	6	2	0	0	0	0.72358	1	14381	14381		1.7423	0.089654	1	1401300			58258	962	42497	42830	56832	56832					0.04723628874944552
VGNVTLQPER	10	Unmodified	_VGNVTLQPER_					0	0	0		nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1;ENST00000532415.5_1_16:18480742-18495490:-|nuORF;ENST00000532739.1_1_16:16450692-16458759:+|nuORF	nc|ENSG00000008710|P98161-2|PKD1	nc|ENSG00000008710|P98161-2|PKD1	MULTI-MATCH	A375_MHC_IP_R1	1		3	371.540134	1111.59857	0.17783	6.6072E-05	3.8438	0.0014281	4.0216	0.0014942	371.54132323664146	39.996	0.20474	39.996	39.845	40.05	0	0.044469	0.0001702	NaN	1.7423	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	776870			58259	962	42497	42830							0.04723628874944552
VGPAIEPDFVN	11	Unmodified	_VGPAIEPDFVN_					0	0	0			REV__tr|U7SIU9|U7SIU9_FUSNUarginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02241PE=3SV=1	REV__tr|U7SIU9|U7SIU9_FUSNUarginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02241PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	386.93280029296875	3	386.532756	1156.57644	-0.42537	-0.00016442	0.2927	0.00011314	-0.13267	-5.1281E-05	386.53290185133534	38.782	0.56269	39.557	39.3	39.863	0.77451					21	10	3	0	0	0	0.67989	1	14317	14317		9.7643	0.52048	1	4624500	+		58260	28219	42498	42831	56833	56833					0.004414044065242706
VGPAIEPDFVN	11	Unmodified	_VGPAIEPDFVN_					0	0	0			REV__tr|U7SIU9|U7SIU9_FUSNUarginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02241PE=3SV=1	REV__tr|U7SIU9|U7SIU9_FUSNUarginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02241PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	386.532756	1156.57644	-0.42537	-0.00016442	0.2927	0.00011314	-0.13267	-5.1281E-05	386.53290185133534	38.782	0.56269	39.557	39.3	39.863	0.77451	-0.070888	-0.0001566	NaN	9.7643	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4624500	+		58261	28219	42498	42831							0.004414044065242706
VGPDAADPH	9	Unmodified	_VGPDAADPH_					0	0	0		ENST00000595117.1_1_19:51125949-51129280:-|nuORF;ENSG00000213023|ENST00000600079|SYT3	ENST00000595117.1_1_19:51125949-51129280:-|nuORF	ENST00000595117.1_1_19:51125949-51129280:-|nuORF	MSMS	A375_MHC_IP_R1	1	439.672607421875	2	439.703774	877.392996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.44	1	140.44	139.94	140.94	0								0	0	0	0.15486	1	53943	53943		4.3292	1.7518	1				58262	9553	42499	42832	56834	56834					-0.05060524584484938
VGPDDTNSEY	10	Unmodified	_VGPDDTNSEY_					0	0	0		nc|ENSG00000008735|Q13387-2|MAPK8IP2;ENSG00000008735|ENST00000329492|MAPK8IP2	nc|ENSG00000008735|Q13387-2|MAPK8IP2	nc|ENSG00000008735|Q13387-2|MAPK8IP2	MSMS	A375_MHC_IP_R1	1	548.6817626953125	2	548.725101	1095.43565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.304	1	38.304	37.804	38.804	0								0	0	0	0.15105	1	12982	12982		15.847	1.0089	1				58263	963	42500	42833	56835	56835					-0.1082521903754241
VGPGFGPG	8	Unmodified	_VGPGFGPG_					0	0	0			REV__nc|ENSG00000049540|P15502-11|ELN	REV__nc|ENSG00000049540|P15502-11|ELN	MULTI-MSMS	A375_MHC_IP_R1	1	687.745849609375	1	687.346052	686.338775	-0.62175	-0.00042736	0.58936	0.00040509	-0.032396	-2.2267E-05	687.3463641896707	74.768	1.7704	74.768	73.943	75.714	0					52	34	2	0	0	0	0.77781	2	27040	27040;27567		2.8892	0	1	3959300	+		58264	16380	42501	42834	56836;56837	56836					-0.016940719453714337
VGPGFGPG	8	Unmodified	_VGPGFGPG_					0	0	0			REV__nc|ENSG00000049540|P15502-11|ELN	REV__nc|ENSG00000049540|P15502-11|ELN	MULTI-MSMS	A375_MHC_IP_R1	1	687.965576171875	1	687.346052	686.338775	-0.67801	-0.00046603	0.48178	0.00033115	-0.19623	-0.00013488	687.3462784500811	76.61	2.6898	76.61	75.714	78.403	0					85	52	2	0	0	0	0.77839	1	27805	27805		0.79363	0	1	7808400	+		58265	16380	42501	42834	56838	56838					-0.016940719453714337
VGPGFGPG	8	Unmodified	_VGPGFGPG_					0	0	0			REV__nc|ENSG00000049540|P15502-11|ELN	REV__nc|ENSG00000049540|P15502-11|ELN	MULTI-MSMS	A375_MHC_IP_R1	1	687.74658203125	1	687.346052	686.338775	-0.58071	-0.00039915	0.76084	0.00052296	0.18013	0.00012381	687.3464408179611	93.216	1.9327	93.216	92.718	94.651	0					59	37	2	0	0	0	0.77781	1	34321	34321		2.8892	0	1	2378600	+		58266	16380	42501	42834	56839	56839					-0.016940719453714337
VGPGFGPG	8	Unmodified	_VGPGFGPG_					0	0	0			REV__nc|ENSG00000049540|P15502-11|ELN	REV__nc|ENSG00000049540|P15502-11|ELN	MULTI-SECPEP	A375_MHC_IP_R1	1	688.122314453125	1	687.346052	686.338775	-0.67801	-0.00046603	0.48178	0.00033115	-0.19623	-0.00013488	687.3462784500811	76.61	2.6898	76.61	75.714	78.403	0					85	52	2	0	0	0	0.972	1	28004	28004		2.8892	0	1	7808400	+		58267	16380	42501	42834	56840	56840					-0.016940719453714337
VGPGFGPG	8	Unmodified	_VGPGFGPG_					0	0	0			REV__nc|ENSG00000049540|P15502-11|ELN	REV__nc|ENSG00000049540|P15502-11|ELN	MULTI-MSMS	A375_MHC_IP_R2	2	687.7448120117188	1	687.346052	686.338775	-0.56559	-0.00038876	0.36637	0.00025182	-0.19923	-0.00013694	687.3461542260151	90.907	2.2349	91.641	90.445	92.68	0.7345					74	43	2	0	0	0	0.77839	2	34836	34836;34882		0.79363	0	1	5286500	+		58268	16380	42501	42834	56841;56842	56841					-0.016940719453714337
VGPGFGPG	8	Unmodified	_VGPGFGPG_					0	0	0			REV__nc|ENSG00000049540|P15502-11|ELN	REV__nc|ENSG00000049540|P15502-11|ELN	MULTI-SECPEP	A375_MHC_IP_R2	2	687.7459716796875	1	687.346052	686.338775	-0.64175	-0.00044111	0.082416	5.6649E-05	-0.55934	-0.00038446	687.346123927799	78.233	0.96883	78.976	78.265	79.234	0.74293					27	18	2	0	0	0	0.972	1	29641	29641		0.79363	0	1	3452700	+		58269	16380	42501	42834	56843	56843					-0.016940719453714337
VGPGFGPG	8	Unmodified	_VGPGFGPG_					0	0	0			REV__nc|ENSG00000049540|P15502-11|ELN	REV__nc|ENSG00000049540|P15502-11|ELN	MULTI-MATCH	A375_MHC_IP_R1	1		1	687.346052	686.338775	-0.47151	-0.00032409	0.49364	0.0003393	0.022124	1.5207E-05	687.3462983191401	79.135	0.91279	79.135	78.403	79.316	0	0.079919	0.00014178	NaN	0.79363	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4903500	+		58270	16380	42501	42834							-0.016940719453714337
VGPGFGPG	8	Unmodified	_VGPGFGPG_					0	0	0			REV__nc|ENSG00000049540|P15502-11|ELN	REV__nc|ENSG00000049540|P15502-11|ELN	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	687.346052	686.338775	-0.62175	-0.00042736	0.58936	0.00040509	-0.032396	-2.2267E-05	687.3463641896707	74.768	1.7704	74.768	73.943	75.714	0	-0.012689	-9.1456E-06	NaN	2.8892	52	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3959300	+		58271	16380	42501	42834							-0.016940719453714337
VGPGFGPG	8	Unmodified	_VGPGFGPG_					0	0	0			REV__nc|ENSG00000049540|P15502-11|ELN	REV__nc|ENSG00000049540|P15502-11|ELN	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	687.346052	686.338775	-0.65009	-0.00044684	0.61787	0.00042469	-0.032219	-2.2145E-05	687.3463100375078	74.056	1.3251	74.793	73.838	75.163	0.73752	0.012689	1.0453E-05	NaN	2.8892	48	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4071500	+		58272	16380	42501	42834							-0.016940719453714337
VGPGPPRAEY	10	Unmodified	_VGPGPPRAEY_					0	0	0		ENSG00000187862|ENST00000368236|TTC24	ENSG00000187862|ENST00000368236|TTC24	ENSG00000187862|ENST00000368236|TTC24	MULTI-MSMS	A375_MHC_IP_R1	1	522.2341918945312	2	521.769448	1041.52434	-0.56842	-0.00029659	-2.592	-0.0013524	-3.1604	-0.001649	521.7699997458838	58.467	0.81193	58.467	58.075	58.887	0					31	15	3	0	0	0	0.70496	1	20971	20971		10.074	0	1	3829900			58273	8864	42502	42835	56844	56844					0.005242857834218739
VGPGRAGP	8	Unmodified	_VGPGRAGP_					0	0	0		ENST00000581080.1_1_17:38497677-38497911:-|nuORF	ENST00000581080.1_1_17:38497677-38497911:-|nuORF	ENST00000581080.1_1_17:38497677-38497911:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	355.94873046875	2	355.700838	709.387122	-0.28227	-0.0001004	0.35176	0.00012512	0.069493	2.4719E-05	355.7008472812256	23.457	0.45779	23.457	23.33	23.787	0					11	8	2	0	0	0	0.94479	1	6552	6552		19.439	5.9311	1	2629600			58274	13678	42503	42836	56845	56845					0.020804216945180087
VGPHKPPA	8	Unmodified	_VGPHKPPA_					0	0	0			REV__ENSG00000151929|ENST00000369085|BAG3	REV__ENSG00000151929|ENST00000369085|BAG3	MULTI-SECPEP	A375_MHC_IP_R2	2	402.1319580078125	2	401.732138	801.449723	0.17775	7.1408E-05	-0.46243	-0.00018577	-0.28468	-0.00011436	401.73193205910337	138.24	0.30362	138.33	138.22	138.52	0.083969					7	5	2	0	0	0	0.972	1	54258	54258		0.79363	0	1	543750	+		58275	19784	42504	42837	56846	56846					0.04105567762690043
VGPKGAAK	8	Unmodified	_VGPKGAAK_					0	0	0			REV__ENST00000368006.7_1_1:161094202-161094283:-|nuORF	REV__ENST00000368006.7_1_1:161094202-161094283:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	364.6271667480469	2	364.226688	726.438824	0.16404	5.975E-05	1.4813	0.00053952	1.6453	0.00059927	364.2270779131677	143.69	0.35336	143.71	143.59	143.94	0.024414					9	6	2	0	0	0	0.77842	1	56171	56171		0.69038	0	1	1665600	+		58276	23985	42505	42838	56847	56847					0.06466165388417267
VGPLGKKG	8	Unmodified	_VGPLGKKG_					0	0	0		COL7A1|p.P1441L|1|0.65|ENSG00000114270|chr3:48583737-48583737|G/A|missense_variant	COL7A1|p.P1441L|1|0.65|ENSG00000114270|chr3:48583737-48583737|G/A|missense_variant	COL7A1|p.P1441L|1|0.65|ENSG00000114270|chr3:48583737-48583737|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	378.6424255371094	2	378.242338	754.470124	0.35659	0.00013488	1.8107	0.00068489	2.1673	0.00081977	378.24246711173856	60.003	0.76317	60.003	59.651	60.414	0					30	14	3	0	0	0	0.77702	1	21563	21563		5.7604	0	1	2447000			58277	560	42506	42839	56848	56848					0.08306738422515991
VGPLLLPL	8	Unmodified	_VGPLLLPL_					0	0	0			REV__URB2|p.S646L|1|0.22|ENSG00000135763|chr1:229636550-229636550|C/T|missense_variant	REV__URB2|p.S646L|1|0.22|ENSG00000135763|chr1:229636550-229636550|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	411.27764892578125	2	411.278389	820.542226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.195	1	29.894	29.394	30.394	0.69872								0	0	0	0.16876	1	10175	10175		2.8892	0	1		+		58278	28960	42507	42840	56849	56849					0.12477652776215109
VGPLNPNYLSI	11	Unmodified	_VGPLNPNYLSI_					0	0	0			REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	MULTI-SECPEP	A375_MHC_IP_R1	1	594.1948852539062	2	593.826963	1185.63937	-0.50509	-0.00029994	0.54617	0.00032433	0.041082	2.4395E-05	593.8276572760353	90.159	0.55709	90.159	89.88	90.437	0					15	10	2	0	0	0	0.99227	1	33065	33065		1.1933	0	1	2258300	+		58279	18412	42508	42841	56850	56850					0.05397970194553636
VGPPGPAG	8	Unmodified	_VGPPGPAG_					0	0	0		ENST00000488128.6_1_1:32118254-32121779:-|nuORF;nc|ENSG00000139219|P02458-1|COL2A1;ENSG00000139219|ENST00000380518|COL2A1;nc|ENSG00000084636|Q07092-2|COL16A1;ENSG00000084636|ENST00000373672|COL16A1;ENSG00000204262|ENST00000374866|COL5A2	REV__nc|ENSG00000171502|Q17RW2-2|COL24A1;ENSG00000204262|ENST00000374866|COL5A2;REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	REV__nc|ENSG00000171502|Q17RW2-2|COL24A1	MULTI-SECPEP	A375_MHC_IP_R2	2	650.794921875	1	651.346052	650.338775	-0.73268	-0.00047723	-0.8339	-0.00054316	-1.5666	-0.0010204	651.3496389689958	131.79	0.4538	131.98	131.8	132.25	0.18953					11	8	2	0	0	0	0.972	1	51892	51892		0.79363	0	1	1442300			58280	21072;9419;16554	42509	42842	56851	56851					-0.00038071945380124816
VGPPGYLL	8	Unmodified	_VGPPGYLL_					0	0	0		ENSG00000196663|ENST00000359520|TECPR2;ENST00000559124.1_1_14:102963896-102964591:+|nuORF	ENSG00000196663|ENST00000359520|TECPR2	ENSG00000196663|ENST00000359520|TECPR2	MULTI-MSMS	A375_MHC_IP_R1	1	408.6354064941406	2	408.236722	814.45889	-0.49619	-0.00020256	-1.6497	-0.00067345	-2.1458	-0.00087601	408.2360715406479	139.2	0.91214	139.2	138.97	139.88	0					24	17	2	0	0	0	0.77839	1	53511	53511		0.79363	0	1	3667500			58281	9072	42510	42843	56852	56852					0.04423916328380528
VGPPKGPV	8	Unmodified	_VGPPKGPV_					0	0	0			REV__ENST00000462803.5_1_9:82286241-82340056:+|nuORF	REV__ENST00000462803.5_1_9:82286241-82340056:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	376.2646484375	2	375.729064	749.443575	0.34031	0.00012786	0.26833	0.00010082	0.60864	0.00022868	375.7290054354048	48.194	0.40097	48.951	48.779	49.18	0.75766					11	7	2	0	0	0	0.77603	1	18047	18047		9.3474	0.75416	1	416910	+		58282	17469	42511	42844	56853	56853					0.05883049531189499
VGPRSPRW	8	Unmodified	_VGPRSPRW_					0	0	0		ENST00000443094.2_1_3:50335101-50336749:-|nuORF;ENST00000354862.4_1_3:50334947-50336749:-|nuORF;ENST00000443842.1_1_3:50335503-50336815:-|nuORF	ENST00000443094.2_1_3:50335101-50336749:-|nuORF	ENST00000443094.2_1_3:50335101-50336749:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	478.1670837402344	2	477.767043	953.519533	-0.77637	-0.00037092	1.8141	0.00086672	1.0377	0.00049579	477.76818688021405	25.991	0.96263	25.991	25.765	26.728	0					27	18	2	0	0	0	0.76654	1	7694	7694		15.847	1.2655	1	3500900			58283	10947	42512	42845	56854	56854					0.0409144643132322
VGPRSPRW	8	Unmodified	_VGPRSPRW_					0	0	0		ENST00000443094.2_1_3:50335101-50336749:-|nuORF;ENST00000354862.4_1_3:50334947-50336749:-|nuORF;ENST00000443842.1_1_3:50335503-50336815:-|nuORF	ENST00000443094.2_1_3:50335101-50336749:-|nuORF	ENST00000443094.2_1_3:50335101-50336749:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	478.1664123535156	2	477.767043	953.519533	-0.98166	-0.00046901	-0.099197	-4.7393E-05	-1.0809	-0.0005164	477.76700860698975	25.374	0.56081	26.017	25.719	26.28	0.64368					16	10	2	0	0	0	0.7256	1	8456	8456		26.884	7.4447	1	3401500			58284	10947	42512	42845	56855	56855					0.0409144643132322
VGPTAFRL	8	Unmodified	_VGPTAFRL_					0	0	0			REV__ENSG00000139182|ENST00000266546|CLSTN3	REV__ENSG00000139182|ENST00000266546|CLSTN3	MULTI-MSMS	A375_MHC_IP_R1	1	430.66619873046875	2	430.75307	859.491587	-0.046954	-2.0226E-05	0.18371	7.9133E-05	0.13675	5.8907E-05	430.75307621138126	62.808	0.56416	62.808	62.557	63.121	0					17	10	2	0	0	0	0.77686	1	22775	22775		6.3541	0	1	1893600	+		58285	19140	42513	42846	56856	56856					0.05622123451234984
VGPTVYIEYGE	11	Unmodified	_VGPTVYIEYGE_					0	0	0			REV__nc|ENSG00000137337|Q14676-2|MDC1	REV__nc|ENSG00000137337|Q14676-2|MDC1	MSMS	A375_MHC_IP_R2	2	614.23583984375	2	613.800611	1225.58667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.27	1	119.8	119.3	120.3	0.5321								0	0	0	0.15377	1	45410	45410		18.146	5.9057	1		+		58286	19001	42514	42847	56857	56857					-0.01710032658934324
VGPVEKKELSS	11	Unmodified	_VGPVEKKELSS_					0	0	0			REV__ENSG00000107854|ENST00000371627|TNKS2	REV__ENSG00000107854|ENST00000371627|TNKS2	MULTI-SECPEP	A375_MHC_IP_R1	1	391.8420104980469	3	391.555561	1171.64485	0.35783	0.00014011	0.61957	0.0002426	0.9774	0.00038271	391.5557648880147	21.197	0.30371	21.197	21.048	21.352	0					7	5	2	0	0	0	0.99424	1	5586	5586		2.2527	0	1	914560	+		58287	17500	42515	42848	56858	56858					0.06589648986368957
VGPVNPAA	8	Unmodified	_VGPVNPAA_					0	0	0		ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	MULTI-MSMS	A375_MHC_IP_R2	2	725.4236450195312	1	724.398815	723.391539	-0.5965	-0.00043211	-1.6904	-0.0012245	-2.2869	-0.0016566	724.39776835405	137.95	0.50635	138.04	137.86	138.37	0.083969					14	9	2	0	0	0	0.77839	1	54106	54106		0.79363	0	1	940640			58288	4417	42516	42849	56859	56859					0.01877886117415528
VGPVPLFFW	9	Unmodified	_VGPVPLFFW_					0	0	0			REV__ENST00000336078.8_1_18:56651316-56651520:+|nuORF	REV__ENST00000336078.8_1_18:56651316-56651520:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	354.281494140625	3	354.532139	1060.57459	-0.40499	-0.00014358	-0.2421	-8.5834E-05	-0.6471	-0.00022942	354.8664195846062	41.349	0.35408	42.124	41.946	42.3	0.77451					10	6	2	0	0	0	0.79683	1	15315	15315		2.9952	2.9952	1	1775800	+		58289	23677	42517	42850	56860	56860					0.04672440179228943
VGQASFKY	8	Unmodified	_VGQASFKY_					0	0	0		ENSG00000136932|ENST00000375119|TRMO	ENSG00000136932|ENST00000375119|TRMO	ENSG00000136932|ENST00000375119|TRMO	MSMS	A375_MHC_IP_R1	1	450.3587646484375	2	450.23471	898.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.383	1	19.383	18.883	19.883	0								0	0	0	0.16876	1	4775	4775		10.183	0.83596	1				58290	4842	42518	42851	56861	56861					0.001578268346634104
VGQEIQVKY	9	Unmodified	_VGQEIQVKY_					0	0	0		ENSG00000138035|ENST00000447944|PNPT1	ENSG00000138035|ENST00000447944|PNPT1	ENSG00000138035|ENST00000447944|PNPT1	MULTI-MSMS	A375_MHC_IP_R2	2	355.57965087890625	3	355.197596	1062.57096	-0.67284	-0.00023899	-0.25008	-8.8826E-05	-0.92292	-0.00032782	355.5319231103288	33.52	0.70988	34.272	34.043	34.753	0.75225					21	13	2	0	0	0	0.72507	1	12181	12181		2.7352	0.23671	1	1985500			58291	4945	42519	42852	56862	56862					0.04217725614716983
VGQEPWDTFQ	10	Unmodified	_VGQEPWDTFQ_					0	0	0			REV__nc|ENSG00000153707|P23468-2|PTPRD;REV__nc|ENSG00000105426|Q13332-7|PTPRS	REV__nc|ENSG00000105426|Q13332-7|PTPRS	MULTI-SECPEP	A375_MHC_IP_R1	1	603.1898803710938	2	603.774928	1205.5353	-0.22068	-0.00013324	0.049232	2.9725E-05	-0.17145	-0.00010352	603.7749393280834	53.747	0.65968	53.747	53.453	54.113	0					29	12	3	0	0	0	0.79457	1	19304	19304		26.268	10.421	1	8520100	+		58292	17382;19845	42520	42853	56863	56863					-0.059243566329541864
VGQEPWDTFQ	10	Unmodified	_VGQEPWDTFQ_					0	0	0			REV__nc|ENSG00000153707|P23468-2|PTPRD;REV__nc|ENSG00000105426|Q13332-7|PTPRS	REV__nc|ENSG00000105426|Q13332-7|PTPRS	MULTI-MSMS	A375_MHC_IP_R2	2	603.692138671875	2	603.774928	1205.5353	-1.0087	-0.00060903	-0.42243	-0.00025505	-1.4311	-0.00086408	603.7745429387244	52.968	0.91656	53.72	53.487	54.404	0.75105					33	17	3	0	0	0	0.52785	1	20175	20175		26.268	8.8255	1	7385300	+		58293	17382;19845	42520	42853	56864	56864					-0.059243566329541864
VGQFMQQG	8	Unmodified	_VGQFMQQG_					0	0	0			REV__KLK5|p.E128K|1|0.26|ENSG00000167754|chr19:50949069-50949069|C/T|missense_variant	REV__KLK5|p.E128K|1|0.26|ENSG00000167754|chr19:50949069-50949069|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	447.7765808105469	2	447.710545	893.406537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.93	1	25.573	25.073	26.073	0.64368								0	0	0	0.16876	1	8272	8272		2.5775	0	1		+		58294	20789	42521	42854	56865	56865					-0.0444299007688187
VGQILGNMLF	10	Unmodified	_VGQILGNMLF_					0	0	0			REV__ENSG00000148110|ENST00000375344|MFSD14B	REV__ENSG00000148110|ENST00000375344|MFSD14B	MULTI-SECPEP	A375_MHC_IP_R1	1	364.6254577636719	3	364.535444	1090.5845	0.42522	0.00015501	-0.96044	-0.00035012	-0.53522	-0.00019511	364.5348779647808	54.123	0.40235	54.123	53.861	54.263	0					10	7	2	0	0	0	0.93961	1	19244	19244		3.3196	2.2482	1	792860	+		58295	19614	42522	42855	56866	56866					0.042832601222926314
VGQLFDAPLQT	11	Unmodified	_VGQLFDAPLQT_					0	0	0			REV__CON__Q2KIF2	REV__CON__Q2KIF2	MULTI-MSMS	A375_MHC_IP_R2	2	595.7171630859375	2	594.816596	1187.61864	-0.87712	-0.00052173	0.09847	5.8572E-05	-0.77865	-0.00046316	595.3181055885022	19.913	0.45385	20.524	20.298	20.752	0.61029					12	8	2	0	0	0	0.73672	1	6167	6167		2.4985	0.41248	1	1511700	+	+	58296	15879	42523	42856	56867	56867					0.0323337981487839
VGQLRSTLQL	10	Unmodified	_VGQLRSTLQL_					0	0	0			REV__ENST00000570346.1_2_16:16387929-16388153:+|nuORF	REV__ENST00000570346.1_2_16:16387929-16388153:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	373.6291809082031	3	372.224146	1113.65061	0.3643	0.0001356	0.76722	0.00028558	1.1315	0.00042118	372.2241804119511	50.878	0.65778	50.878	50.613	51.27	0					38	12	5	0	0	0	0.72378	1	18043	18043		0.69767	0.07084	1	11869000	+		58297	17260	42524	42857	56868	56868					0.09832792288693781
VGQNHAYF	8	Unmodified	_VGQNHAYF_					0	0	0		nc|ENSG00000165164|Q6ZTR5-6|CFAP47;ENSG00000165164|ENST00000378653|CFAP47	nc|ENSG00000165164|Q6ZTR5-6|CFAP47	nc|ENSG00000165164|Q6ZTR5-6|CFAP47	MULTI-MSMS	A375_MHC_IP_R1	1	468.6217041015625	2	468.222134	934.429715	-0.048268	-2.26E-05	-0.1053	-4.9306E-05	-0.15357	-7.1906E-05	468.22203976656255	45.509	0.60552	45.509	45.183	45.789	0					28	11	3	0	0	0	0.7479	1	15892	15892		20.871	20.871	1	11438000			58298	6922	42525	42858	56869	56869					-0.04012227967916715
VGQNHAYF	8	Unmodified	_VGQNHAYF_					0	0	0		nc|ENSG00000165164|Q6ZTR5-6|CFAP47;ENSG00000165164|ENST00000378653|CFAP47	nc|ENSG00000165164|Q6ZTR5-6|CFAP47	nc|ENSG00000165164|Q6ZTR5-6|CFAP47	MULTI-MSMS	A375_MHC_IP_R2	2	468.6217956542969	2	468.222134	934.429715	-0.72504	-0.00033948	0.3499	0.00016383	-0.37513	-0.00017565	468.2222255824754	44.685	0.86636	45.454	44.934	45.8	0.76909					41	16	4	0	0	0	0.72109	1	16650	16650		28.173	10.038	1	9566900			58299	6922	42525	42858	56870	56870					-0.04012227967916715
VGQNHAYF	8	Unmodified	_VGQNHAYF_					0	0	0		nc|ENSG00000165164|Q6ZTR5-6|CFAP47;ENSG00000165164|ENST00000378653|CFAP47	nc|ENSG00000165164|Q6ZTR5-6|CFAP47	nc|ENSG00000165164|Q6ZTR5-6|CFAP47	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	468.222134	934.429715	-0.048268	-2.26E-05	-0.1053	-4.9306E-05	-0.15357	-7.1906E-05	468.22203976656255	45.509	0.60552	45.509	45.183	45.789	0	0.02717	-0.00010735	NaN	28.173	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11438000			58300	6922	42525	42858							-0.04012227967916715
VGQNHAYF	8	Unmodified	_VGQNHAYF_					0	0	0		nc|ENSG00000165164|Q6ZTR5-6|CFAP47;ENSG00000165164|ENST00000378653|CFAP47	nc|ENSG00000165164|Q6ZTR5-6|CFAP47	nc|ENSG00000165164|Q6ZTR5-6|CFAP47	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	468.222134	934.429715	-0.72504	-0.00033948	0.3499	0.00016383	-0.37513	-0.00017565	468.2222255824754	44.685	0.86636	45.454	44.934	45.8	0.76909	-0.02717	0.00031892	NaN	28.173	41	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9566900			58301	6922	42525	42858							-0.04012227967916715
VGQTQKPKVY	10	Unmodified	_VGQTQKPKVY_					0	0	0			REV__ENSG00000179468|ENST00000350513|OR9A2	REV__ENSG00000179468|ENST00000350513|OR9A2	MSMS	A375_MHC_IP_R2	2	383.243896484375	3	383.220513	1146.63971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.881	1	20.491	19.991	20.991	0.61029								0	0	0	0.15513	1	6143	6143		4.1895	0	1		+		58302	21565	42526	42859	56871	56871					0.07225389914401603
VGRAAGRGV	9	Unmodified	_VGRAAGRGV_					0	0	0		ENSG00000128739|ENST00000390687|SNRPN;nc|ENSG00000128739|P63162-2|SNRPN	ENSG00000128739|ENST00000390687|SNRPN	ENSG00000128739|ENST00000390687|SNRPN	MULTI-SECPEP	A375_MHC_IP_R1	1	422.1512756347656	2	421.751393	841.488233	0.046021	1.9409E-05	0.29116	0.0001228	0.33718	0.00014221	421.75142920594584	100.5	0.91264	100.5	100.18	101.09	0					32	17	2	0	0	0	0.74651	1	36909	36909		13.508	13.508	1	2837700			58303	4162	42527	42860	56872	56872					0.061148733972345326
VGRALALVRF	10	Unmodified	_VGRALALVRF_					0	0	0			REV__ENSG00000173546|ENST00000308508|CSPG4	REV__ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R2	2	368.59429931640625	3	367.901226	1100.68185	-0.23162	-8.5213E-05	-0.096207	-3.5395E-05	-0.32783	-0.00012061	367.9011791699495	34.025	0.81264	34.778	34.5	35.312	0.75225					34	15	3	0	0	0	0.67901	3	12257	12197;12205;12257		14.957	0	1	54158000	+		58304	21229	42528	42861	56873;56874;56875	56875					0.13553410113445352
VGRANGKG	8	Unmodified	_VGRANGKG_					0	0	0			REV__ENST00000520674.5_1_5:141017464-141017569:+|nuORF	REV__ENST00000520674.5_1_5:141017464-141017569:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	378.9851989746094	2	379.717019	757.419485	0.21495	8.162E-05	-0.94156	-0.00035753	-0.72661	-0.00027591	379.71704777633437	43.532	0.55504	44.304	44.079	44.634	0.7724					14	10	2	0	0	0	0.972	1	16187	16187		2.3027	2.3027	1	857480	+		58305	25704	42529	42862	56876	56876					0.031072090975158062
VGRATWFSI	9	Unmodified	_VGRATWFSI_					0	0	0			REV__APOL5|p.P269S|1|0.21|ENSG00000128313|chr22:35726873-35726873|C/T|missense_variant	REV__APOL5|p.P269S|1|0.21|ENSG00000128313|chr22:35726873-35726873|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	518.6953125	2	518.782359	1035.55016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.159	1	90.159	89.659	90.659	0								0	0	0	0.1521	1	33132	33132		18.135	1.1927	1		+		58306	15429	42530	42863	56877	56877					0.033811800256899005
VGRDRSGC	8	Unmodified	_VGRDRSGC_					0	0	0			REV__ENSG00000176399|ENST00000325870|DMRTA1	REV__ENSG00000176399|ENST00000325870|DMRTA1	MULTI-MSMS	A375_MHC_IP_R1	1	425.6033020019531	2	425.203418	848.392284	-0.11392	-4.844E-05	-0.14507	-6.1684E-05	-0.25899	-0.00011012	425.20330733919127	93.876	0.50498	93.876	93.635	94.14	0					21	9	3	0	0	0	0.77839	1	34516	34516		0.79363	0	1	1650400	+		58307	21403	42531	42864	56878	56878					-0.03797642505173826
VGRDTPMHRL	10	Unmodified	_VGRDTPMHRL_					0	0	0			REV__ENSG00000163312|ENST00000295488|HELQ	REV__ENSG00000163312|ENST00000295488|HELQ	MULTI-MSMS	A375_MHC_IP_R1	1	394.9351501464844	3	394.545113	1180.61351	-0.096408	-3.8037E-05	4.1446	0.0016352	4.0482	0.0015972	394.8815489660971	19.52	0.76195	19.52	19.268	20.03	0					24	14	2	0	0	0	0.70651	1	4954	4954		5.4027	0	1	2119600	+		58308	20350	42532	42865	56879	56879					0.03042797471312042
VGREICRQY	9	Unmodified	_VGREICRQY_					0	0	0		nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-SECPEP	A375_MHC_IP_R2	2	375.9284362792969	3	375.19408	1122.56041	0.36935	0.00013858	-1.769	-0.00066373	-1.3997	-0.00052515	375.5280886360269	27.445	0.25485	28.124	27.996	28.251	0.67857					6	4	2	0	0	0	0.69507	1	9421	9421		13.615	5.1706	1	2191800			58309	4667	42533	42866	56880	56880					0.004034196886323116
VGREQVNKA	9	Unmodified	_VGREQVNKA_					0	0	0		nc|ENSG00000163512|Q9H6S1-3|AZI2;nc|ENSG00000163512|Q9H6S1-5|AZI2;nc|ENSG00000163512|Q9H6S1-4|AZI2;ENST00000463512.5_1_3:28368296-28390095:-|nuORF;ENSG00000163512|ENST00000479665|AZI2	nc|ENSG00000163512|Q9H6S1-3|AZI2	nc|ENSG00000163512|Q9H6S1-3|AZI2	MULTI-SECPEP	A375_MHC_IP_R2	2	501.17999267578125	2	500.780348	999.546142	-0.70053	-0.00035081	-0.36926	-0.00018492	-1.0698	-0.00053573	500.7802921549548	26.986	0.61396	27.646	27.466	28.08	0.65992					17	11	2	0	0	0	0.75164	1	9191	9191		13.906	5.1606	1	5527300			58310	6673	42534	42867	56881	56881					0.046350905319854974
VGRERSKLF	9	Unmodified	_VGRERSKLF_					0	0	0			REV__ENSG00000149115|ENST00000358252|TNKS1BP1	REV__ENSG00000149115|ENST00000358252|TNKS1BP1	MSMS	A375_MHC_IP_R1	1	364.5631103515625	3	364.548852	1090.62473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.68	1	86.68	86.18	87.18	0								0	0	0	0.15486	1	31789	31789		5.2969	0.39987	1		+		58311	19661	42535	42868	56882	56882					0.08303942837073919
VGRFAKLGEF	10	Unmodified	_VGRFAKLGEF_					0	0	0			REV__ENST00000544418.1_1_12:24987681-25055019:-|nuORF	REV__ENST00000544418.1_1_12:24987681-25055019:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	374.4333190917969	3	375.213469	1122.61858	0.053794	2.0184E-05	-0.078906	-2.9607E-05	-0.025112	-9.4225E-06	375.21334013976167	40.959	0.45713	41.733	41.54	41.997	0.77451					13	8	2	0	0	0	0.93799	1	15140	15140		1.7423	1.7423	1	1940700	+		58312	16448	42536	42869	56883	56883					0.06217424605551969
VGRFGDTATL	10	Unmodified	_VGRFGDTATL_					0	0	0			REV__SH3PXD2A|p.L1009F|1|0.34|ENSG00000107957|chr10:103602193-103602193|G/A|missense_variant	REV__SH3PXD2A|p.L1009F|1|0.34|ENSG00000107957|chr10:103602193-103602193|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	520.2261962890625	2	518.774731	1035.53491	-0.89045	-0.00046194	-0.70666	-0.0003666	-1.5971	-0.00082854	518.7746172288769	51.522	0.55892	52.274	51.864	52.423	0.75225					28	10	4	0	0	0	0.71245	1	19352	19352		6.7232	0.51738	1	5915300	+		58313	27960	42537	42870	56884	56884					0.018562684378593985
VGRFKADA	8	Unmodified	_VGRFKADA_					0	0	0			REV__KCTD8|p.R231G|1|0.32|ENSG00000183783|chr4:44447833-44447833|G/C|missense_variant	REV__KCTD8|p.R231G|1|0.32|ENSG00000183783|chr4:44447833-44447833|G/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	864.7490844726562	1	863.473377	862.466101	-1.361	-0.0011752	-0.51543	-0.00044506	-1.8765	-0.0016203	863.4729758794638	28.911	0.29657	29.609	29.484	29.78	0.69872					8	5	2	0	0	0	0.77702	1	10012	10012		5.7604	0	1	12178000	+		58314	26835	42538	42871	56885	56885					0.029366489287895092
VGRFKGSL	8	Unmodified	_VGRFKGSL_					0	0	0		nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-2|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	MSMS	A375_MHC_IP_R2	2	432.2994689941406	2	432.25852	862.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.237	1	73.972	73.472	74.472	0.73541								0	0	0	0.16876	1	27799	27799		10.183	3.8293	1				58315	3274	42539	42872	56886	56886					0.06573525825524484
VGRGTCLY	8	Unmodified	_VGRGTCLY_					0	0	0			REV__nc|ENSG00000140832|Q96A59-2|MARVELD3	REV__nc|ENSG00000140832|Q96A59-2|MARVELD3	MSMS	A375_MHC_IP_R2	2	434.78485107421875	2	434.720913	867.427273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.566	1	21.176	20.676	21.676	0.61029								0	0	0	0.16876	1	6412	6412		6.3541	0	1		+		58316	27263	42540	42873	56887	56887					-0.01174399697242734
VGRGTFEQE	9	Unmodified	_VGRGTFEQE_					0	0	0			REV__tr|U7SJ85|U7SJ85_FUSNUThioredoxin-disulfidereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02144PE=4SV=1	REV__tr|U7SJ85|U7SJ85_FUSNUThioredoxin-disulfidereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02144PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	512.1970825195312	2	511.748713	1021.48287	-0.49725	-0.00025447	-0.39164	-0.00020042	-0.88889	-0.00045489	511.748565438616	36.181	0.50647	36.181	35.932	36.439	0					13	9	2	0	0	0	0.58047	1	12140	12140		15.847	3.3156	1	1618200	+		58317	28227	42541	42874	56888	56888					-0.02700894975907886
VGRHYFLEL	9	Unmodified	_VGRHYFLEL_					0	0	0		ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	MULTI-MSMS	A375_MHC_IP_R1	1	378.94171142578125	3	378.541586	1132.60293	0.55002	0.00020821	-0.21718	-8.221E-05	0.33284	0.000126	378.5414712152771	70.227	0.56142	70.227	69.933	70.494	0					25	10	3	0	0	0	0.44183	1	25475	25475		22.658	12.343	1	4324700			58318	6921	42542	42875	56889	56889					0.04193138088498927
VGRHYFLEL	9	Unmodified	_VGRHYFLEL_					0	0	0		ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	MULTI-SECPEP	A375_MHC_IP_R2	2	378.94146728515625	3	378.541586	1132.60293	0.21278	8.0545E-05	-0.51274	-0.00019409	-0.29997	-0.00011355	378.54137317686633	69.185	0.60879	69.921	69.626	70.234	0.73511					25	11	3	0	0	0	0.4261	1	26218	26218		28.495	16.32	1	5489100			58319	6921	42542	42875	56890	56890					0.04193138088498927
VGRIAQNLGLE	11	Unmodified	_VGRIAQNLGLE_					0	0	0		PCDHA8|p.D51N|1|0.14|ENSG00000204962|chr5:140841472-140841472|G/A|missense_variant	PCDHA8|p.D51N|1|0.14|ENSG00000204962|chr5:140841472-140841472|G/A|missense_variant	PCDHA8|p.D51N|1|0.14|ENSG00000204962|chr5:140841472-140841472|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	390.5897216796875	3	390.559417	1168.65642	-0.44134	-0.00017237	2.9509	0.0011525	2.5096	0.00098013	390.56067772546714	18.921	0.58413	19.524	19.452	20.037	0.60308					22	11	2	0	0	0	0.72515	1	5669	5669		13.519	2.0008	1	12807000			58320	15127	42543	42876	56891	56891					0.07883890800371773
VGRKEEKRRRL	11	Unmodified	_VGRKEEKRRRL_					0	0	0		ENST00000597636.5_1_19:50168679-50168826:-|nuORF	ENST00000597636.5_1_19:50168679-50168826:-|nuORF	ENST00000597636.5_1_19:50168679-50168826:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	476.62139892578125	3	476.295297	1425.86406	-0.58382	-0.00027807	0.65512	0.00031203	0.071301	3.396E-05	476.2956774804355	87.416	0.51028	87.416	87.237	87.747	0					12	9	2	0	0	0	0.73881	1	32083	32083		0.50596	0	1	1411100			58321	13848	42544	42877	56892	56892					0.1681651778824289
VGRKRRHR	8	Unmodified	_VGRKRRHR_					0	0	0		nc|ENSG00000286105|A0A494BZU4|TMEM217B;ENST00000356757.6_1_6:37180235-37180745:-|nuORF	nc|ENSG00000286105|A0A494BZU4|TMEM217B	nc|ENSG00000286105|A0A494BZU4|TMEM217B	MSMS	A375_MHC_IP_R1	1	355.4598388671875	3	355.560197	1063.65876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.835	1	45.835	45.335	46.335	0								0	0	0	0.16876	1	16055	16055		1.8442	0.6509	1				58322	10970	42545	42878	56893	56893					0.1294782883935568
VGRKRRHR	8	Unmodified	_VGRKRRHR_					0	0	0		nc|ENSG00000286105|A0A494BZU4|TMEM217B;ENST00000356757.6_1_6:37180235-37180745:-|nuORF	nc|ENSG00000286105|A0A494BZU4|TMEM217B	nc|ENSG00000286105|A0A494BZU4|TMEM217B	MSMS	A375_MHC_IP_R2	2	355.459716796875	3	355.560197	1063.65876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.768	1	37.539	37.039	38.039	0.7709								0	0	0	0.16876	1	13423	13423		0.45834	0.18932	1				58323	10970	42545	42878	56894	56894					0.1294782883935568
VGRKRRHR	8	Unmodified	_VGRKRRHR_					0	0	0		nc|ENSG00000286105|A0A494BZU4|TMEM217B;ENST00000356757.6_1_6:37180235-37180745:-|nuORF	nc|ENSG00000286105|A0A494BZU4|TMEM217B	nc|ENSG00000286105|A0A494BZU4|TMEM217B	MSMS	A375_MHC_IP_R2	2	355.45977783203125	3	355.560197	1063.65876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.596	1	45.365	44.865	45.865	0.7691								0	0	0	0.16876	1	16649	16649		0.45834	0.18932	1				58324	10970	42545	42878	56895	56895					0.1294782883935568
VGRKRRHR	8	Unmodified	_VGRKRRHR_					0	0	0		nc|ENSG00000286105|A0A494BZU4|TMEM217B;ENST00000356757.6_1_6:37180235-37180745:-|nuORF	nc|ENSG00000286105|A0A494BZU4|TMEM217B	nc|ENSG00000286105|A0A494BZU4|TMEM217B	MSMS	A375_MHC_IP_R2	2	355.4598083496094	3	355.560197	1063.65876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.162	1	45.927	45.427	46.427	0.76519								0	0	0	0.16876	1	16876	16876		0.45834	0.057624	1				58325	10970	42545	42878	56896	56896					0.1294782883935568
VGRLPEPCP	9	Unmodified	_VGRLPEPCP_					0	0	0			REV__ENST00000513342.5_1_17:46990150-47004493:+|nuORF	REV__ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	484.638671875	2	484.25512	966.495686	-0.082471	-3.9937E-05	0.045006	2.1794E-05	-0.037464	-1.8142E-05	484.25501107110625	23.049	0.55259	23.049	22.623	23.176	0					17	10	2	0	0	0	0.60917	1	6175	6175		19.257	0	1	1487700	+		58326	20104	42546	42879	56897	56897					0.011098448826146523
VGRLRLQK	8	Unmodified	_VGRLRLQK_					0	0	0		nc|ENSG00000187144|Q7Z572-2|SPATA21;ENSG00000187144|ENST00000335496|SPATA21	nc|ENSG00000187144|Q7Z572-2|SPATA21	nc|ENSG00000187144|Q7Z572-2|SPATA21	MSMS	A375_MHC_IP_R2	2	485.3702697753906	2	485.319443	968.624333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.508	1	25.152	24.652	25.652	0.64368								0	0	0	0.16876	1	8061	8061		12.532	0.89125	1				58327	8808	42547	42880	56898	56898					0.13876567907880144
VGRNIPIF	8	Unmodified	_VGRNIPIF_					0	0	0		ENSG00000182901|ENST00000440928|RGS7	ENSG00000182901|ENST00000440928|RGS7	ENSG00000182901|ENST00000440928|RGS7	MSMS	A375_MHC_IP_R1	1	458.2000732421875	2	458.27417	914.533787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.944	1	77.944	77.444	78.444	0								0	0	0	0.16876	1	28447	28447		2.8892	0	1				58328	8446	42548	42881	56899	56899					0.07310098859613845
VGRPRVSF	8	Unmodified	_VGRPRVSF_					0	0	0			REV__ENST00000438163.1_1_2:32428025-32428073:+|nuORF	REV__ENST00000438163.1_1_2:32428025-32428073:+|nuORF	MSMS	A375_MHC_IP_R2	2	459.6429748535156	2	459.269419	916.524284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.257	1	60.004	59.504	60.504	0.74714								0	0	0	0.16876	1	22427	22427		2.8892	0	1		+		58329	24778	42549	42882	56900	56900					0.06268330574084757
VGRRHPPVLR	10	Unmodified	_VGRRHPPVLR_					0	0	0		ENSG00000178804|ENST00000324382|H1-8	ENSG00000178804|ENST00000324382|H1-8	ENSG00000178804|ENST00000324382|H1-8	MULTI-MSMS	A375_MHC_IP_R2	2	396.64715576171875	3	396.247507	1185.72069	-0.55391	-0.00021949	-0.077508	-3.0712E-05	-0.63142	-0.0002502	396.24751394043744	25.152	0.76401	25.795	25.516	26.28	0.64368					41	14	4	0	0	0	0.70027	1	8374	8374		12.175	4.5658	1	13347000			58330	8179	42550	42883	56901	56901					0.1352613546782777
VGRRLVVIWVL	11	Unmodified	_VGRRLVVIWVL_					0	0	0		ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	MSMS	A375_MHC_IP_R2	2	655.47021484375	2	655.426982	1308.83941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.916	1	21.527	21.027	22.027	0.61029								0	0	0	0.16353	1	6548	6548		0.35063	0	1				58331	4061	42551	42884	56902	56902					0.19734489652842058
VGRRVEAG	8	Unmodified	_VGRRVEAG_					0	0	0			REV__ENST00000335312.7_1_19:3631143-3631773:-|nuORF	REV__ENST00000335312.7_1_19:3631143-3631773:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	422.643310546875	2	422.243401	842.472249	-0.23614	-9.971E-05	0.21127	8.9209E-05	-0.02487	-1.0501E-05	422.24340363334113	90.999	0.81197	90.999	90.437	91.249	0					27	15	2	0	0	0	0.7779	1	33372	33372		2.5775	0.51773	1	982330	+		58332	23670	42552	42885	56903	56903					0.044711671603295144
VGRVAGQH	8	Unmodified	_VGRVAGQH_					0	0	0			REV__ENST00000379698.8_1_X:19713767-19713848:-|nuORF	REV__ENST00000379698.8_1_X:19713767-19713848:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	823.4242553710938	1	823.453311	822.446034	-0.13568	-0.00011173	-1.0608	-0.00087353	-1.1965	-0.00098526	823.4533879046402	109.09	1.8801	109.09	108.05	109.93	0					52	36	2	0	0	0	0.77702	1	39992	39992		5.7604	0	1	1746000	+		58333	24204	42553	42886	56904	56904					0.02770897988852994
VGRVGRQG	8	Unmodified	_VGRVGRQG_					0	0	0			REV__ENST00000372774.7_2_X:101395704-101395815:-|nuORF	REV__ENST00000372774.7_2_X:101395704-101395815:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	828.064453125	1	828.47986	827.472583	-0.34755	-0.00028794	0.13667	0.00011323	-0.21088	-0.00017471	828.4798508637749	98.694	2.4867	98.694	97.641	100.13	0					83	48	2	0	0	0	0.7779	1	36286	36286		2.5775	0.27475	1	7316300	+		58334	22204	42554	42887	56905	56905					0.05194586880179486
VGRVIIPIL	9	Unmodified	_VGRVIIPIL_					0	0	0		tr|U7T468|U7T468_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00277PE=3SV=1	tr|U7T468|U7T468_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00277PE=3SV=1	tr|U7T468|U7T468_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00277PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	490.73712158203125	2	490.33677	978.658987	-0.10368	-5.0839E-05	0.29218	0.00014327	0.1885	9.2428E-05	490.33681126041625	109.66	0.51111	109.66	109.42	109.93	0					15	9	3	0	0	0	0.55818	1	40249	40249		16.942	0	1	1641900			58335	29995	42555	42888	56906	56906					0.16880390996004735
VGRVVRMG	8	Unmodified	_VGRVVRMG_					0	0	0			REV__nc|ENSG00000197530|Q96AX9-10|MIB2	REV__nc|ENSG00000197530|Q96AX9-10|MIB2	MULTI-MSMS	A375_MHC_IP_R1	1	873.3260498046875	1	873.508717	872.501441	-0.62742	-0.00054806	0.56794	0.0004961	-0.059483	-5.1959E-05	873.5093712252667	140	0.61343	140	139.78	140.39	0					18	11	2	0	0	0	0.77839	1	53865	53865		0.79363	0	1	1659200	+		58336	22294	42556	42889	56907	56907					0.060089881849762605
VGRVVRMG	8	Unmodified	_VGRVVRMG_					0	0	0			REV__nc|ENSG00000197530|Q96AX9-10|MIB2	REV__nc|ENSG00000197530|Q96AX9-10|MIB2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	873.508717	872.501441	-0.62742	-0.00054806	0.56794	0.0004961	-0.059483	-5.1959E-05	873.5093712252667	140	0.61343	140	139.78	140.39	0	-0.0084469	0.00018353	NaN	0.79363	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1659200	+		58337	22294	42556	42889							0.060089881849762605
VGRVVRMG	8	Unmodified	_VGRVVRMG_					0	0	0			REV__nc|ENSG00000197530|Q96AX9-10|MIB2	REV__nc|ENSG00000197530|Q96AX9-10|MIB2	MULTI-MATCH	A375_MHC_IP_R2	2		1	873.508717	872.501441	-0.36786	-0.00032133	-0.18017	-0.00015738	-0.54803	-0.00047871	873.5083574666555	139.95	0.76903	140.01	139.8	140.57	0.059906	0.0084469	-0.00046995	NaN	0.79363	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2053800	+		58338	22294	42556	42889							0.060089881849762605
VGRWSGRGW	9	Unmodified	_VGRWSGRGW_					0	0	0			REV__ENST00000416675.5_1_7:100450451-100456466:+|nuORF	REV__ENST00000416675.5_1_7:100450451-100456466:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	531.1748046875	2	530.7754	1059.53625	-0.96963	-0.00051466	-0.71211	-0.00037797	-1.6817	-0.00089263	530.7750762053322	37.45	0.76767	38.221	38.02	38.788	0.7709					24	14	3	0	0	0	0.65623	1	13720	13720		25.399	10.561	1	5849400	+		58339	24536	42557	42890	56908	56908					0.008859473172833532
VGRYLREL	8	Unmodified	_VGRYLREL_					0	0	0		ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	MULTI-SECPEP	A375_MHC_IP_R1	1	503.6280517578125	2	503.295633	1004.57671	-0.42931	-0.00021607	-0.61704	-0.00031055	-1.0464	-0.00052663	503.29537036502694	34.509	0.40485	34.509	34.303	34.708	0					10	7	2	0	0	0	0.972	1	11293	11293		9.3474	6.0661	1	788260			58340	9564	42558	42891	56909	56909					0.07460868917041807
VGSAITLTQV	10	Unmodified	_VGSAITLTQV_					0	0	0		ENST00000475185.5_1_18:20877516-20877840:-|nuORF	ENST00000475185.5_1_18:20877516-20877840:-|nuORF	ENST00000475185.5_1_18:20877516-20877840:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	495.18719482421875	2	494.787307	987.560061	-0.49829	-0.00024655	0.066145	3.2728E-05	-0.43215	-0.00021382	494.7872551524218	80.82	0.71146	80.82	80.592	81.303	0					32	13	4	0	0	0	0.22217	1	29513	29513		56.177	6.6228	1	8289400			58341	12415	42559	42892	56910	56910					0.065783232404101
VGSAVGGTSY	10	Unmodified	_VGSAVGGTSY_					0	0	0		nc|ENSG00000240268|A6NHM9|MOXD2P	nc|ENSG00000240268|A6NHM9|MOXD2P	nc|ENSG00000240268|A6NHM9|MOXD2P	MULTI-SECPEP	A375_MHC_IP_R1	1	449.6611328125	2	449.219257	896.423961	-0.054489	-2.4477E-05	-0.24867	-0.00011171	-0.30316	-0.00013619	449.21909892203706	43.562	0.81264	43.562	43.197	44.01	0					18	15	2	0	0	0	0.93615	1	15305	15305		1.6526	0	1	2267500			58342	14911	42560	42893	56911	56911					-0.02839371270238189
VGSDIAEL	8	Unmodified	_VGSDIAEL_					0	0	0		nc|ENSG00000120341|Q96JE7-2|SEC16B;ENST00000464428.2_1_1:177898995-177929556:-|nuORF;ENST00000466953.6_1_1:177898995-177928232:-|nuORF;ENSG00000120341|ENST00000308284|SEC16B	nc|ENSG00000120341|Q96JE7-2|SEC16B	nc|ENSG00000120341|Q96JE7-2|SEC16B	MSMS	A375_MHC_IP_R2	2	402.6119079589844	2	402.210901	802.407249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.175	1	29.874	29.374	30.374	0.69872								0	0	0	0.16876	1	10167	10167		9.3474	0	1				58343	3661	42561	42894	56912	56912					-0.0018587215619163544
VGSEGPLKGI	10	Unmodified	_VGSEGPLKGI_					0	0	0		ALK|p.C928Afs*11|1|0.5|ENSG00000171094|chr2:29228918-29228918|C/-|frameshift_variant;ENSG00000171094|ENST00000389048|ALK	ALK|p.C928Afs*11|1|0.5|ENSG00000171094|chr2:29228918-29228918|C/-|frameshift_variant	ALK|p.C928Afs*11|1|0.5|ENSG00000171094|chr2:29228918-29228918|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	478.654541015625	2	478.7742	955.533846	-0.79729	-0.00038172	0.36927	0.0001768	-0.42802	-0.00020492	478.77404612479495	23.984	0.40866	24.614	24.333	24.742	0.63014					13	7	2	0	0	0	0.69306	1	7744	7744		13.906	1.3745	1	3485300			58344	104	42562	42895	56913	56913					0.05430054068960999
VGSETMEGY	9	Unmodified	_VGSETMEGY_					0	0	0			REV__tr|U7SPA3|U7SPA3_FUSNUATPsynthasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpDPE=3SV=1	REV__tr|U7SPA3|U7SPA3_FUSNUATPsynthasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpDPE=3SV=1	MSMS	A375_MHC_IP_R2	2	486.69195556640625	2	486.702583	971.390612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.444	1	74.179	73.679	74.679	0.73541								0	0	0	0.15486	1	27876	27876		12.532	0.89125	1		+		58345	28352	42563	42896	56914	56914					-0.0962274110445378
VGSEVSPQTMA	11	Unmodified	_VGSEVSPQTMA_					0	0	0			REV__ENST00000461006.5_1_1:32096163-32098865:-|nuORF	REV__ENST00000461006.5_1_1:32096163-32098865:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	553.2294311523438	2	553.263339	1104.51212	-0.52601	-0.00029102	-0.33448	-0.00018506	-0.86049	-0.00047608	553.7650544558853	59.613	0.71126	59.613	59.346	60.057	0					34	13	4	0	0	0	0.52598	2	21481	21445;21481		29.082	10.935	1	3479400	+		58346	24974	42564	42897	56915;56916	56916					-0.035951187419414055
VGSEVSPQTMA	11	Unmodified	_VGSEVSPQTMA_					0	0	0			REV__ENST00000461006.5_1_1:32096163-32098865:-|nuORF	REV__ENST00000461006.5_1_1:32096163-32098865:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	553.6610107421875	2	553.263339	1104.51212	-1.1518	-0.00063724	-1.3134	-0.00072666	-2.4652	-0.0013639	553.2616043244475	58.875	1.0133	59.622	59.286	60.299	0.74714					33	19	3	0	0	0	0.60747	2	22278	22241;22278		22.736	2.2827	1	3440500	+		58347	24974	42564	42897	56917;56918	56918					-0.035951187419414055
VGSFRQEY	8	Unmodified	_VGSFRQEY_					0	0	0		nc|ENSG00000122008|Q9UBT6-3|POLK;ENSG00000122008|ENST00000241436|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK	nc|ENSG00000122008|Q9UBT6-3|POLK	nc|ENSG00000122008|Q9UBT6-3|POLK	MULTI-SECPEP	A375_MHC_IP_R2	2	493.6400451660156	2	493.240524	984.466495	-0.51848	-0.00025573	-0.37393	-0.00018444	-0.8924	-0.00044017	493.24020204416917	30.505	0.45351	31.224	31.013	31.467	0.71857					14	8	2	0	0	0	0.33704	1	10743	10743		57.722	25.416	1	2541300			58348	3755	42565	42898	56919	56919					-0.026359761420053474
VGSFRQEY	8	Unmodified	_VGSFRQEY_					0	0	0		nc|ENSG00000122008|Q9UBT6-3|POLK;ENSG00000122008|ENST00000241436|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK	nc|ENSG00000122008|Q9UBT6-3|POLK	nc|ENSG00000122008|Q9UBT6-3|POLK	MULTI-MATCH	A375_MHC_IP_R1	1		2	493.240524	984.466495	-0.45024	-0.00022208	-0.043432	-2.1422E-05	-0.49368	-0.0002435	493.24058629085516	31.153	0.45537	31.153	30.908	31.363	0	-0.035454	0.00010333	NaN	57.722	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1937100			58349	3755	42565	42898							-0.026359761420053474
VGSFRSNSF	9	Unmodified	_VGSFRSNSF_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.1459655761719	2	500.745973	999.477394	-0.42341	-0.00021202	0.4464	0.00022353	0.022992	1.1513E-05	500.7461256832516	38.521	0.61218	38.521	38.168	38.78	0					23	11	3	0	0	0	0.0023519	1	13081	13081		140.63	92.287	1	5956400			58350	6633	42566	42899	56920	56920					-0.0223657376770916
VGSFRSNSF	9	Unmodified	_VGSFRSNSF_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	501.1455383300781	2	500.745973	999.477394	-0.80028	-0.00040073	0.41492	0.00020777	-0.38535	-0.00019296	500.74594698144125	37.683	0.61322	38.457	38.074	38.687	0.77451					26	11	3	0	0	0	0.001114	1	13803	13803		152.89	88.65	1	10104000			58351	6633	42566	42899	56921	56921					-0.0223657376770916
VGSFRSSV	8	Unmodified	_VGSFRSSV_					0	0	0			REV__ENST00000521304.1_1_2:89533689-89534392:-|nuORF	REV__ENST00000521304.1_1_2:89533689-89534392:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	420.1239318847656	2	419.72451	837.434466	0.1376	5.7755E-05	0.70151	0.00029444	0.83911	0.00035219	419.72385965674823	103.67	4.0067	103.67	100.53	104.54	0					126	78	3	0	0	0	0.7779	1	38287	38287		2.5775	0.27475	1	3322700	+		58352	25717	42567	42900	56922	56922					0.009246561748568638
VGSGASAPRRT	11	Unmodified	_VGSGASAPRRT_					0	0	0		ENST00000523238.5_1_6:112101798-112194199:-|nuORF	ENST00000523238.5_1_6:112101798-112194199:-|nuORF	ENST00000523238.5_1_6:112101798-112194199:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1057.9281005859375	1	1058.57013	1057.56285	0.06319	6.6891E-05	-2.547	-0.0026962	-2.4838	-0.0026293	1058.5674352895187	129.09	0.25479	129.09	128.94	129.19	0					9	4	3	0	0	0	0.92455	1	49549	49549		16.149	1.7437	1	19811000			58353	13036	42568	42901	56923	56923					0.03637591417941621
VGSGGDSRIVC	11	Unmodified	_VGSGGDSRIVC_					0	0	0			REV__ENSG00000196090|ENST00000373187|PTPRT	REV__ENSG00000196090|ENST00000373187|PTPRT	MULTI-MSMS	A375_MHC_IP_R1	1	524.6946411132812	2	525.255848	1048.49714	-0.060687	-3.1876E-05	1.4848	0.0007799	1.4241	0.00074803	525.2565126975502	44.626	1.4753	44.626	43.859	45.334	0					85	28	4	0	0	0	0.72877	1	15355	15355		10.074	0	1	23011000	+		58354	22156	42569	42902	56924	56924					-0.0251656581926909
VGSGGKGGV	9	Unmodified	_VGSGGKGGV_					0	0	0			REV__nc|ENSG00000148842|Q9H8M5-2|CNNM2	REV__nc|ENSG00000148842|Q9H8M5-2|CNNM2	MULTI-SECPEP	A375_MHC_IP_R1	1	717.7888793945312	1	717.388979	716.381703	-0.21527	-0.00015443	-0.2414	-0.00017318	-0.45667	-0.00032761	717.3888102615687	48.327	0.70929	48.327	48.071	48.78	0					18	13	2	0	0	0	0.77396	1	17142	17142		10.074	1.4806	1	5047900	+		58355	19650	42570	42903	56925	56925					0.012166981120572018
VGSGGKGGV	9	Unmodified	_VGSGGKGGV_					0	0	0			REV__nc|ENSG00000148842|Q9H8M5-2|CNNM2	REV__nc|ENSG00000148842|Q9H8M5-2|CNNM2	MULTI-MSMS	A375_MHC_IP_R2	2	717.78857421875	1	717.388979	716.381703	-0.61239	-0.00043932	-0.13488	-9.676E-05	-0.74726	-0.00053608	717.3887897788175	47.475	0.86069	48.237	48.022	48.883	0.76128					23	16	2	0	0	0	0.6656	1	17880	17880		10.074	0.72649	1	5136900	+		58356	19650	42570	42903	56926	56926					0.012166981120572018
VGSGGKGGV	9	Unmodified	_VGSGGKGGV_					0	0	0			REV__nc|ENSG00000148842|Q9H8M5-2|CNNM2	REV__nc|ENSG00000148842|Q9H8M5-2|CNNM2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	717.388979	716.381703	-0.61239	-0.00043932	-0.13488	-9.676E-05	-0.74726	-0.00053608	717.3887897788175	47.475	0.86069	48.237	48.022	48.883	0.76128	-0.045076	3.9445E-05	NaN	10.074	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5136900	+		58357	19650	42570	42903							0.012166981120572018
VGSGGRSL	8	Unmodified	_VGSGGRSL_					0	0	0		ENST00000524525.5_1_1:145826925-145826982:-|nuORF	ENST00000524525.5_1_1:145826925-145826982:-|nuORF	ENST00000524525.5_1_1:145826925-145826982:-|nuORF	MSMS	A375_MHC_IP_R1	1	366.6446533203125	2	366.703577	731.392602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.111	1	43.111	42.611	43.611	0								0	0	0	0.16876	1	14972	14972		5.2307	0	1				58358	13058	42571	42904	56927	56927					0.016161004863306516
VGSGLFNR	8	Unmodified	_VGSGLFNR_					0	0	0			REV__ENST00000418569.5_1_2:219151936-219152008:-|nuORF	REV__ENST00000418569.5_1_2:219151936-219152008:-|nuORF	MSMS	A375_MHC_IP_R2	2	425.1307678222656	2	425.232502	848.450451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.394	1	49.151	48.651	49.651	0.75737								0	0	0	0.16876	1	18172	18172		10.183	0.83596	1		+		58359	24559	42572	42905	56928	56928					0.020163624117572
VGSGLSPLL	9	Unmodified	_VGSGLSPLL_					0	0	0		ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	MULTI-MSMS	A375_MHC_IP_R1	1	422.1529846191406	2	421.752736	841.490919	0.24311	0.00010253	-0.26216	-0.00011057	-0.019044	-8.0321E-06	421.7526402348007	70.211	0.6617	70.211	69.832	70.494	0					20	12	2	0	0	0	0.083809	1	25497	25497		53.576	5.2297	1	1715500			58360	2345	42573	42906	56929	56929					0.06383284011531032
VGSGPGGCFQW	11	Unmodified	_VGSGPGGCFQW_					0	0	0		ENST00000356387.6_1_7:102088095-102088605:+|nuORF	ENST00000356387.6_1_7:102088095-102088605:+|nuORF	ENST00000356387.6_1_7:102088095-102088605:+|nuORF	MSMS	A375_MHC_IP_R2	2	547.72314453125	2	547.739834	1093.46511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.75	1	107.51	107.01	108.01	0.75977								0	0	0	0.15541	1	40341	40341		17.113	4.5813	1				58361	10965	42574	42907	56930	56930					-0.0778793350241358
VGSGQRPPD	9	Unmodified	_VGSGQRPPD_					0	0	0		ENST00000553612.5_1_14:81687110-81687260:-|nuORF	ENST00000553612.5_1_14:81687110-81687260:-|nuORF	ENST00000553612.5_1_14:81687110-81687260:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	913.193115234375	1	912.45337	911.446094	0.21001	0.00019162	1.4386	0.0013127	1.6486	0.0015043	912.4567118692079	116.45	1.3246	116.45	115.32	116.65	0					47	25	3	0	0	0	0.78798	1	42314	42314		7.2892	1.5288	1	16965000			58362	13405	42575	42908	56931	56931					-0.013171468018185806
VGSGQRPPD	9	Unmodified	_VGSGQRPPD_					0	0	0		ENST00000553612.5_1_14:81687110-81687260:-|nuORF	ENST00000553612.5_1_14:81687110-81687260:-|nuORF	ENST00000553612.5_1_14:81687110-81687260:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	913.193115234375	1	912.45337	911.446094	0.30964	0.00028253	3.0208	0.0027563	3.3304	0.0030388	912.4571389277303	114.93	0.96279	114.93	114.57	115.53	0					27	18	2	0	0	0	0.78798	1	42314	42314		7.2892	1.5288	1	4099800			58363	13405	42575	42908	56932	56932					-0.013171468018185806
VGSGRIAL	8	Unmodified	_VGSGRIAL_					0	0	0			REV__ENST00000465814.5_1_11:72423956-72425365:-|nuORF	REV__ENST00000465814.5_1_11:72423956-72425365:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	773.5076293945312	1	772.467564	771.460287	-0.45843	-0.00035412	-0.11259	-8.6969E-05	-0.57102	-0.00044109	772.4675037563952	33.962	0.55512	33.962	33.698	34.253	0					18	10	2	0	0	0	0.77839	2	11218	11218;11246		0.79363	0	1	8928600	+		58364	25028	42576	42909	56933;56934	56933					0.06541550417114195
VGSGRIAL	8	Unmodified	_VGSGRIAL_					0	0	0			REV__ENST00000465814.5_1_11:72423956-72425365:-|nuORF	REV__ENST00000465814.5_1_11:72423956-72425365:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	772.467564	771.460287	-0.45843	-0.00035412	-0.11259	-8.6969E-05	-0.57102	-0.00044109	772.4675037563952	33.962	0.55512	33.962	33.698	34.253	0	0.054719	-0.00014741	NaN	0.79363	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8928600	+		58365	25028	42576	42909							0.06541550417114195
VGSGRIAL	8	Unmodified	_VGSGRIAL_					0	0	0			REV__ENST00000465814.5_1_11:72423956-72425365:-|nuORF	REV__ENST00000465814.5_1_11:72423956-72425365:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	772.467564	771.460287	-1.1038	-0.00085263	0.43716	0.0003377	-0.66662	-0.00051494	772.467776651865	33.101	0.4593	33.853	33.635	34.095	0.75225	-0.054719	0.00027725	NaN	0.79363	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3830300	+		58366	25028	42576	42909							0.06541550417114195
VGSGVAHA	8	Unmodified	_VGSGVAHA_					0	0	0		nc|ENSG00000088899|O60299-2|LZTS3;ENSG00000088899|ENST00000337576|LZTS3	nc|ENSG00000088899|O60299-2|LZTS3	nc|ENSG00000088899|O60299-2|LZTS3	MULTI-SECPEP	A375_MHC_IP_R1	1	696.7213745117188	1	697.362764	696.355488	-0.60239	-0.00042008	-0.93597	-0.00065271	-1.5384	-0.0010728	697.3619769862964	100.05	2.4785	100.05	99.168	101.65	0					81	48	3	0	0	0	0.972	1	36691	36691		2.5775	0	1	36098000			58367	1904	42577	42910	56935	56935					-0.004835710594420561
VGSGVNIITP	10	Unmodified	_VGSGVNIITP_					0	0	0			REV__nc|ENSG00000083454|Q93086|P2RX5	REV__nc|ENSG00000083454|Q93086|P2RX5	MULTI-MSMS	A375_MHC_IP_R2	2	479.173828125	2	478.7742	955.533846	-0.79729	-0.00038172	0.36927	0.0001768	-0.42802	-0.00020492	478.77404612479495	23.984	0.40866	24.614	24.333	24.742	0.63014					13	7	2	0	0	0	0.69833	1	7847	7847		13.042	3.6593	1	3485300	+		58368	27125	42578	42911	56936	56936					0.054300540689382615
VGSIFDRVL	9	Unmodified	_VGSIFDRVL_					0	0	0		ENSG00000143171|ENST00000359842|RXRG	ENSG00000143171|ENST00000359842|RXRG	ENSG00000143171|ENST00000359842|RXRG	MULTI-MSMS	A375_MHC_IP_R1	1	503.7068176269531	2	503.290017	1004.56548	-0.27457	-0.00013819	1.0904	0.00054881	0.81587	0.00041062	503.29148155429186	88.584	1.0188	88.584	87.848	88.867	0					40	19	4	0	0	0	0.38603	1	32560	32560		25.399	1.1894	1	7745900			58369	5354	42579	42912	56937	56937					0.06338046822895649
VGSILESMW	9	Unmodified	_VGSILESMW_					0	0	0			REV__ENST00000440496.5_1_X:102100790-102100820:+|nuORF	REV__ENST00000440496.5_1_X:102100790-102100820:+|nuORF	MSMS	A375_MHC_IP_R2	2	511.2120361328125	2	511.254785	1020.49502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.05	1	110.79	110.29	111.29	0.73692								0	0	0	0.14905	1	41519	41519		23.148	2.6948	1		+		58370	24796	42580	42913	56938	56938					-0.014409945570719174
VGSLGKCLIWV	11	Unmodified	_VGSLGKCLIWV_					0	0	0		ENST00000331835.9_2_1:87379959-87380010:-|nuORF	ENST00000331835.9_2_1:87379959-87380010:-|nuORF	ENST00000331835.9_2_1:87379959-87380010:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	391.59619140625	3	392.22661	1173.658	0.22341	8.7627E-05	2.0506	0.0008043	2.274	0.00089192	392.5620096297873	44.171	0.2066	44.171	44.01	44.216	0					5	3	2	0	0	0	0.99331	1	15363	15363		1.1098	0.54658	1	682410			58371	10773	42581	42914	56939	56939					0.07811808564770217
VGSLGTIII	9	Unmodified	_VGSLGTIII_					0	0	0		ENSG00000104643|ENST00000221086|MTMR9	ENSG00000104643|ENST00000221086|MTMR9	ENSG00000104643|ENST00000221086|MTMR9	MULTI-MSMS	A375_MHC_IP_R1	1	437.1765441894531	2	436.776211	871.537869	-0.16141	-7.0499E-05	-0.18385	-8.03E-05	-0.34526	-0.0001508	436.7760846684843	99.462	1.0604	99.462	99.117	100.18	0					43	20	3	0	0	0	0.083809	1	36694	36694		53.576	1.3072	1	40722000			58372	2524	42582	42915	56940	56940					0.09696143562666748
VGSLKVGLL	9	Unmodified	_VGSLKVGLL_					0	0	0			REV__nc|ENSG00000182871|P39060|COL18A1	REV__nc|ENSG00000182871|P39060|COL18A1	MULTI-SECPEP	A375_MHC_IP_R1	1	443.692138671875	2	443.292028	884.569503	-0.20855	-9.2448E-05	0.55236	0.00024486	0.34382	0.00015241	443.2921074787604	36.945	0.55555	36.945	36.592	37.148	0					21	10	3	0	0	0	0.56537	1	12416	12416		22.736	0	1	4734000	+		58373	27398	42583	42916	56941	56941					0.12260136316615444
VGSLLGEFIS	10	Unmodified	_VGSLLGEFIS_					0	0	0			REV__ENSG00000189280|ENST00000338513|GJB5	REV__ENSG00000189280|ENST00000338513|GJB5	MULTI-SECPEP	A375_MHC_IP_R2	2	510.71063232421875	2	511.281857	1020.54916	-0.58499	-0.00029909	-0.69773	-0.00035674	-1.2827	-0.00065583	511.28183097497896	110.73	0.5076	111.47	111.14	111.65	0.73692					14	9	2	0	0	0	0.38158	1	41731	41731		36.127	1.7253	1	768800	+		58374	22147	42584	42917	56942	56942					0.03970920866152028
VGSLLLGA	8	Unmodified	_VGSLLLGA_					0	0	0		ENSG00000197496|ENST00000359271|SLC2A10	ENSG00000197496|ENST00000359271|SLC2A10	ENSG00000197496|ENST00000359271|SLC2A10	MULTI-SECPEP	A375_MHC_IP_R1	1	365.98541259765625	2	365.228897	728.44324	0.045639	1.6669E-05	0.4884	0.00017838	0.53403	0.00019504	365.2290264256986	39.973	0.35608	39.973	39.744	40.1	0					11	6	2	0	0	0	0.85124	1	13677	13677		19.439	0	1	2556700			58375	9165	42585	42918	56943	56943					0.06815629811319468
VGSLLNGRKY	10	Unmodified	_VGSLLNGRKY_					0	0	0		ENSG00000189079|ENST00000334344|ARID2;ARID2|p.G1450Dfs*3|1|0.36|ENSG00000189079|chr12:45852471-45852471|G/-|frameshift_variant;ARID2|p.T1506Qfs*10|1|0.88|ENSG00000189079|chr12:45852638-45852638|T/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2	ENSG00000189079|ENST00000334344|ARID2	ENSG00000189079|ENST00000334344|ARID2	MSMS	A375_MHC_IP_R1	1	369.6051025390625	3	369.548741	1105.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.706	1	44.706	44.206	45.206	0								0	0	0	0.15365	1	15611	15611		8.9762	1.3673	1				58376	8957	42586	42919	56944	56944					0.07580523117235316
VGSLPELLEND	11	Unmodified	_VGSLPELLEND_					0	0	0			REV__nc|ENSG00000174611|Q8NBH2-3|KY	REV__nc|ENSG00000174611|Q8NBH2-3|KY	MULTI-MSMS	A375_MHC_IP_R2	2	396.2713317871094	3	395.871438	1184.59248	-0.14923	-5.9074E-05	-0.21397	-8.4706E-05	-0.3632	-0.00014378	395.87133571854594	32.182	0.50911	32.919	32.704	33.213	0.73691					16	9	2	0	0	0	0.72851	1	11441	11441		10.315	1.339	1	5548200	+		58377	21294	42587	42920	56945	56945					0.007570658527583873
VGSLYLRP	8	Unmodified	_VGSLYLRP_					0	0	0			REV__ENSG00000138246|ENST00000260818|DNAJC13	REV__ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	A375_MHC_IP_R1	1	452.6520690917969	2	452.766178	903.517802	-0.37257	-0.00016869	-0.02119	-9.5943E-06	-0.39376	-0.00017828	452.7661983017123	66.221	0.45628	66.221	65.972	66.428	0					12	8	2	0	0	0	0.97144	1	24051	24051		14.582	0	1	824390	+		58378	19079	42588	42921	56946	56946					0.0621839262270214
VGSLYLRP	8	Unmodified	_VGSLYLRP_					0	0	0			REV__ENSG00000138246|ENST00000260818|DNAJC13	REV__ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	A375_MHC_IP_R2	2	452.65191650390625	2	452.766178	903.517802	-0.35473	-0.00016061	-0.99892	-0.00045228	-1.3536	-0.00061289	452.76610868525114	65.338	0.35505	66.076	65.867	66.222	0.73811					9	6	2	0	0	0	0.8957	1	24800	24800		15.847	0	1	726950	+		58379	19079	42588	42921	56947	56947					0.0621839262270214
VGSNKLAL	8	Unmodified	_VGSNKLAL_					0	0	0			REV__ENSG00000181378|ENST00000341552|CFAP65	REV__ENSG00000181378|ENST00000341552|CFAP65	MULTI-MSMS	A375_MHC_IP_R2	2	401.64508056640625	2	401.245078	800.475603	-0.32416	-0.00013007	0.20173	8.0944E-05	-0.12243	-4.9123E-05	401.2450586602261	60.427	1.0161	61.172	60.499	61.515	0.74503					35	19	3	0	0	0	0.61116	1	22868	22868		44.407	4.4497	1	4324700	+		58380	21646	42589	42922	56948	56948					0.0673841721431927
VGSNKYSRR	9	Unmodified	_VGSNKYSRR_					0	0	0			REV__ENST00000532500.1_1_16:89651241-89653999:+|nuORF	REV__ENST00000532500.1_1_16:89651241-89653999:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	356.5973205566406	3	356.19659	1065.56794	-0.17295	-6.1604E-05	1.2061	0.0004296	1.0331	0.000368	356.1970124823764	27.05	0.9073	27.05	26.524	27.432	0					33	17	3	0	0	0	0.61998	1	8176	8176		9.544	0	1	4478500	+		58381	21519	42590	42923	56949	56949					0.03777895280541088
VGSNSLHLPVP	11	Unmodified	_VGSNSLHLPVP_					0	0	0		nc|ENSG00000139625|Q12852|MAP3K12;ENSG00000139625|ENST00000547488|MAP3K12;ENST00000547020.1_1_12:53878838-53879309:-|nuORF;ENST00000433092.5_1_3:185155245-185169222:+|nuORF;nc|ENSG00000073803|O43283-5|MAP3K13;nc|ENSG00000073803|O43283-4|MAP3K13;ENSG00000073803|ENST00000265026|MAP3K13	nc|ENSG00000139625|Q12852|MAP3K12	nc|ENSG00000139625|Q12852|MAP3K12	MULTI-SECPEP	A375_MHC_IP_R1	1	373.9499206542969	3	373.876746	1118.60841	0.1625	6.0754E-05	-0.29316	-0.00010961	-0.13067	-4.8853E-05	373.87657972569383	46.876	0.5111	46.876	46.596	47.107	0					12	9	2	0	0	0	0.98748	1	16534	16534		2.4348	2.0842	1	1555500			58382	5092	42591	42924	56950	56950					0.05384816880314247
VGSNVGTKGYY	11	Unmodified	_VGSNVGTKGYY_					0	0	0			REV__nc|ENSG00000151233|Q4G148-2|GXYLT1	REV__nc|ENSG00000151233|Q4G148-2|GXYLT1	MULTI-SECPEP	A375_MHC_IP_R2	2	573.1578369140625	2	572.785296	1143.55604	-0.59611	-0.00034144	-0.11075	-6.3435E-05	-0.70686	-0.00040488	572.7852228541336	28.34	0.4567	29.019	28.757	29.214	0.67857					16	8	3	0	0	0	0.88538	1	9720	9720		13.042	0	1	3370200	+		58383	19745	42592	42925	56951	56951					-0.009997662532896356
VGSNVLDRL	9	Unmodified	_VGSNVLDRL_					0	0	0			REV__ENSG00000111701|ENST00000229304|APOBEC1	REV__ENSG00000111701|ENST00000229304|APOBEC1	MULTI-MSMS	A375_MHC_IP_R2	2	489.1584167480469	2	486.777274	971.539994	-1.2332	-0.00060027	0.69621	0.0003389	-0.53695	-0.00026137	486.7775986233365	37.056	0.86422	37.827	37.615	38.479	0.7709					45	16	5	0	0	0	0.53367	1	13536	13536		18.146	1.0335	1	65661000	+		58384	17688	42593	42926	56952	56952					0.053085723004642205
VGSPGPAG	8	Unmodified	_VGSPGPAG_					0	0	0		CON__P04258	CON__P04258	CON__P04258	MULTI-MSMS	A375_MHC_IP_R1	1	641.3153686523438	1	641.325316	640.31804	-0.55352	-0.00035499	-4.0016	-0.0025663	-4.5551	-0.0029213	641.3243065617933	73.042	0.86122	73.042	72.779	73.64	0					26	16	2	0	0	0	0.77839	1	26583	26583		0.79363	0	1	2112100		+	58385	588	42594	42927	56953	56953					-0.016506623250620578
VGSPLKYEF	9	Unmodified	_VGSPLKYEF_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF;ENST00000507771.5_1_17:48154781-48156326:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-SECPEP	A375_MHC_IP_R1	1	520.6763305664062	2	520.276575	1038.5386	-0.54638	-0.00028427	0.42467	0.00022094	-0.12171	-6.3322E-05	520.2766729892691	68.71	1.2687	68.71	67.904	69.173	0					39	24	4	0	0	0	0.0575	1	24900	24900		86.332	37.986	1	7259500			58386	903	42595	42928	56954	56954					0.020869382116870838
VGSPLKYEF	9	Unmodified	_VGSPLKYEF_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF;ENST00000507771.5_1_17:48154781-48156326:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-SECPEP	A375_MHC_IP_R2	2	520.6763305664062	2	520.276575	1038.5386	-0.56995	-0.00029653	-0.038044	-1.9794E-05	-0.60799	-0.00031632	520.2763521818357	67.9	0.7634	68.636	68.255	69.018	0.73511					27	14	3	0	0	0	0.062502	1	25725	25725		83.429	35.083	1	6570500			58387	903	42595	42928	56955	56955					0.020869382116870838
VGSQLLSP	8	Unmodified	_VGSQLLSP_					0	0	0		ENST00000593232.5_1_19:33134141-33134495:-|nuORF	REV__MYBBP1A|p.A1316V|1|0.54|ENSG00000132382|chr17:4539455-4539455|G/A|missense_variant	REV__MYBBP1A|p.A1316V|1|0.54|ENSG00000132382|chr17:4539455-4539455|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	400.6470947265625	2	400.729261	799.443968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.092	1	25.736	25.236	26.236	0.64368								0	0	0	0.16876	1	8341	8341		12.532	0	1				58388	13826	42596	42929	56956	56956					0.036224244603772604
VGSQLSSAAYI	11	Unmodified	_VGSQLSSAAYI_					0	0	0			REV__nc|ENSG00000278857|P01611|IGKV1D-12	REV__nc|ENSG00000278857|P01611|IGKV1D-12	MULTI-SECPEP	A375_MHC_IP_R2	2	548.68701171875	2	548.287671	1094.56079	-0.66864	-0.00036661	-0.12256	-6.7199E-05	-0.7912	-0.0004338	548.287483672998	43.17	0.45626	43.942	43.724	44.181	0.7724					21	8	3	0	0	0	0.85538	1	16087	16087		19.362	4.5237	1	4704100	+		58389	27516	42597	42930	56957	56957					0.017291178894765835
VGSQWKDI	8	Unmodified	_VGSQWKDI_					0	0	0		ENSG00000146072|ENST00000296861|TNFRSF21	ENSG00000146072|ENST00000296861|TNFRSF21	ENSG00000146072|ENST00000296861|TNFRSF21	MULTI-MSMS	A375_MHC_IP_R1	1	466.6824035644531	2	466.745442	931.476331	-0.16446	-7.6761E-05	0.71319	0.00033288	0.54873	0.00025612	466.74549410476004	53.713	0.50943	53.713	53.403	53.912	0					15	9	2	0	0	0	0.75805	1	19086	19086		18.135	1.1927	1	2016800			58390	5603	42598	42931	56958	56958					0.007852118633650207
VGSRPEVR	8	Unmodified	_VGSRPEVR_					0	0	0		ENST00000317091.8_1_16:66968386-66968422:+|nuORF	ENST00000317091.8_1_16:66968386-66968422:+|nuORF	ENST00000317091.8_1_16:66968386-66968422:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	899.0072631835938	1	899.50574	898.498464	-0.36432	-0.00032771	0.11787	0.00010603	-0.24645	-0.00022168	899.5055535716233	108.68	1.7303	109.43	109.01	110.74	0.74684					41	33	2	0	0	0	0.972	1	41468	41468		8.5933	8.5933	1	2209500			58391	10664	42599	42932	56959	56959					0.045154363318033575
VGSRPEVR	8	Unmodified	_VGSRPEVR_					0	0	0		ENST00000317091.8_1_16:66968386-66968422:+|nuORF	ENST00000317091.8_1_16:66968386-66968422:+|nuORF	ENST00000317091.8_1_16:66968386-66968422:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	899.50574	898.498464	0.036043	3.2421E-05	0.38398	0.00034539	0.42002	0.00037781	899.5056974552408	109.4	1.6769	109.4	108.86	110.54	0	-0.014769	0.00010885	NaN	8.5933	48	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2263900			58392	10664	42599	42932							0.045154363318033575
VGSRVVAK	8	Unmodified	_VGSRVVAK_					0	0	0		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1;nc|ENSG00000143379|Q15047-2|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MSMS	A375_MHC_IP_R2	2	408.2824401855469	2	408.25852	814.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.015	1	19.618	19.118	20.118	0.60308								0	0	0	0.16876	1	5767	5767		8.5933	2.8329	1				58393	5379	42600	42933	56960	56960					0.08781525825520475
VGSSENSVDFY	11	Unmodified	_VGSSENSVDFY_					0	0	0		nc|ENSG00000165521|Q05BV3|EML5;ENSG00000165521|ENST00000554922|EML5	nc|ENSG00000165521|Q05BV3|EML5	nc|ENSG00000165521|Q05BV3|EML5	MULTI-MSMS	A375_MHC_IP_R1	1	602.662109375	2	602.26185	1202.50915	-0.36797	-0.00022161	0.17211	0.00010366	-0.19586	-0.00011796	602.2621203845606	64.065	0.60754	64.065	63.735	64.343	0					20	11	3	0	0	0	0.65093	1	23205	23205		19.362	0	1	2404600			58394	6963	42601	42934	56961	56961					-0.08400670595074189
VGSSLSSR	8	Unmodified	_VGSSLSSR_					0	0	0			REV__ENST00000428670.7_1_12:90028812-90028872:-|nuORF	REV__ENST00000428670.7_1_12:90028812-90028872:-|nuORF	MSMS	A375_MHC_IP_R2	2	396.5791320800781	2	396.714142	791.413731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.804	1	59.551	59.051	60.051	0.74714								0	0	0	0.16876	1	22249	22249		14.582	5.2343	1		+		58395	24679	42602	42935	56962	56962					0.00968065795188977
VGSSQPQL	8	Unmodified	_VGSSQPQL_					0	0	0			REV__ENST00000477994.1_1_10:104183924-104192326:-|nuORF	REV__ENST00000477994.1_1_10:104183924-104192326:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	814.6879272460938	1	815.425758	814.418482	-0.18044	-0.00014714	0.074584	6.0818E-05	-0.10586	-8.6319E-05	815.4257610976038	39.149	1.6254	39.149	38.73	40.355	0					48	31	3	0	0	0	0.972	1	13847	13847		5.2307	0	1	21156000	+		58396	15938	42603	42936	56963	56963					0.003849499379612098
VGSSQPQL	8	Unmodified	_VGSSQPQL_					0	0	0			REV__ENST00000477994.1_1_10:104183924-104192326:-|nuORF	REV__ENST00000477994.1_1_10:104183924-104192326:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	815.425758	814.418482	-1.198	-0.00097691	0.53946	0.00043989	-0.65858	-0.00053702	815.4261250272732	38.305	1.2262	39.079	38.739	39.965	0.77451	-0.034754	0.00029097	NaN	5.2307	42	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21155000	+		58397	15938	42603	42936							0.003849499379612098
VGSTVLVF	8	Unmodified	_VGSTVLVF_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MSMS	A375_MHC_IP_R1	1	411.1556091308594	2	411.242004	820.469455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.351	1	33.351	32.851	33.851	0								0	0	0	0.16876	1	10879	10879		14.582	2.0501	1				58398	9009	42604	42937	56964	56964					0.05203898982802002
VGSVASGAR	9	Unmodified	_VGSVASGAR_					0	0	0		ENST00000459998.1_1_7:30325231-30328375:+|nuORF;ENSG00000180233|ENST00000323037|ZNRF2	ENST00000459998.1_1_7:30325231-30328375:+|nuORF	ENST00000459998.1_1_7:30325231-30328375:+|nuORF	MSMS	A375_MHC_IP_R2	2	402.25079345703125	2	402.222134	802.429715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.057	1	20.668	20.168	21.168	0.61029								0	0	0	0.15486	1	6211	6211		6.2058	0.44535	1				58399	8284	42605	42938	56965	56965					0.02059772032089313
VGSVFRDEFDL	11	Unmodified	_VGSVFRDEFDL_					0	0	0		ENSG00000149403|ENST00000527524|GRIK4	ENSG00000149403|ENST00000527524|GRIK4	ENSG00000149403|ENST00000527524|GRIK4	MULTI-MSMS	A375_MHC_IP_R1	1	429.1603698730469	3	428.547065	1282.61937	0.086496	3.7067E-05	-0.056025	-2.4009E-05	0.030471	1.3058E-05	428.54693011541883	42.861	0.50789	42.861	42.638	43.146	0					20	9	3	0	0	0	0.72949	1	14785	14785		4.7159	0.87001	1	2743200			58400	5803	42606	42939	56966	56966					-0.010638255360618132
VGSVFRDEFDL	11	Unmodified	_VGSVFRDEFDL_					0	0	0		ENSG00000149403|ENST00000527524|GRIK4	ENSG00000149403|ENST00000527524|GRIK4	ENSG00000149403|ENST00000527524|GRIK4	MULTI-SECPEP	A375_MHC_IP_R2	2	428.94659423828125	3	428.547065	1282.61937	-0.14539	-6.2307E-05	-0.17773	-7.6167E-05	-0.32312	-0.00013847	428.5469110896507	42.099	0.40848	42.872	42.657	43.065	0.77298					17	7	3	0	0	0	0.99883	1	15669	15669		2.6312	0	1	2077500			58401	5803	42606	42939	56967	56967					-0.010638255360618132
VGSVFSYAALI	11	Unmodified	_VGSVFSYAALI_					0	0	0			REV__ENST00000490746.5_1_2:75696479-75749569:-|nuORF	REV__ENST00000490746.5_1_2:75696479-75749569:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	376.6098937988281	3	376.209613	1125.60701	0.23373	8.7931E-05	-0.00032693	-1.2299E-07	0.2334	8.7808E-05	376.20965728703294	52.566	0.40844	52.566	52.438	52.847	0					12	7	2	0	0	0	0.73332	1	18761	18761		2.6312	0	1	1650900	+		58402	25390	42607	42940	56968	56968					0.04923182791549152
VGSVKEQW	8	Unmodified	_VGSVKEQW_					0	0	0			REV__ENSG00000122121|ENST00000371106|XPNPEP2	REV__ENSG00000122121|ENST00000371106|XPNPEP2	MSMS	A375_MHC_IP_R2	2	466.6819152832031	2	466.745442	931.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.593	1	53.346	52.846	53.846	0.75225								0	0	0	0.16876	1	19828	19828		16.942	0	1		+		58403	18187	42608	42941	56969	56969					0.007852118633763894
VGSVKEVK	8	Unmodified	_VGSVKEVK_					0	0	0		DNAH14|p.E229K|1|0.3|ENSG00000185842|chr1:224955035-224955035|G/A|missense_variant	DNAH14|p.E229K|1|0.3|ENSG00000185842|chr1:224955035-224955035|G/A|missense_variant	DNAH14|p.E229K|1|0.3|ENSG00000185842|chr1:224955035-224955035|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	423.65802001953125	2	423.258185	844.501818	-0.035536	-1.5041E-05	0.018697	7.9138E-06	-0.016838	-7.127E-06	423.258133931325	20.043	0.55819	20.043	19.776	20.334	0					19	10	2	0	0	0	0.64461	1	5074	5074		45.7	10.768	1	4268100			58404	761	42609	42942	56970	56970					0.07334686385809164
VGSVKEVK	8	Unmodified	_VGSVKEVK_					0	0	0		DNAH14|p.E229K|1|0.3|ENSG00000185842|chr1:224955035-224955035|G/A|missense_variant	DNAH14|p.E229K|1|0.3|ENSG00000185842|chr1:224955035-224955035|G/A|missense_variant	DNAH14|p.E229K|1|0.3|ENSG00000185842|chr1:224955035-224955035|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	423.6578674316406	2	423.258185	844.501818	-0.40722	-0.00017236	-0.22249	-9.4172E-05	-0.62971	-0.00026653	423.25802266312036	18.955	0.23048	19.559	19.452	19.683	0.60308					6	4	2	0	0	0	0.86263	1	5774	5774		26.884	5.137	1	10543000			58405	761	42609	42942	56971	56971					0.07334686385809164
VGSVVSVP	8	Unmodified	_VGSVVSVP_					0	0	0		nc|ENSG00000173744|P52594-2|AGFG1;nc|ENSG00000173744|P52594-3|AGFG1;ENSG00000173744|ENST00000310078|AGFG1;nc|ENSG00000173744|P52594-4|AGFG1;AGFG1|p.P356S|1|0.25|ENSG00000173744|chr2:227534886-227534886|C/T|missense_variant	nc|ENSG00000173744|P52594-2|AGFG1	nc|ENSG00000173744|P52594-2|AGFG1	MULTI-SECPEP	A375_MHC_IP_R2	2	742.9392700195312	1	743.429781	742.422505	-1.4386	-0.0010695	0.8313	0.00061802	-0.60729	-0.00045148	743.4301933298248	53.217	0.66315	53.969	53.638	54.301	0.75105					26	12	3	0	0	0	0.73563	1	20029	20029		36.044	12.896	1	9366300			58406	7826	42610	42943	56972	56972					0.040990394316736456
VGSWWYRSIRY	11	Unmodified	_VGSWWYRSIRY_					0	0	0		ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	MSMS	A375_MHC_IP_R1	1	491.65350341796875	3	491.585966	1471.73607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.011	1	31.011	30.511	31.511	0								0	0	0	0.16099	1	9909	9909		13.519	9.6728	1				58407	1091	42611	42944	56973	56973					0.019069574743753037
VGSYCVFSNQ	10	Unmodified	_VGSYCVFSNQ_					0	0	0		ENSG00000242372|ENST00000374450|EIF6;nc|ENSG00000242372|P56537-2|EIF6	ENSG00000242372|ENST00000374450|EIF6	ENSG00000242372|ENST00000374450|EIF6	MULTI-MSMS	A375_MHC_IP_R2	2	368.8991394042969	3	368.499058	1102.47534	-0.078481	-2.892E-05	0.4172	0.00015374	0.33872	0.00012482	368.49912634619983	60.82	0.55527	61.565	61.364	61.919	0.74503					17	10	2	0	0	0	0.63639	1	23071	23071		11.518	2.5416	1	2846300			58408	9796	42612	42945	56974	56974					-0.07179370567837395
VGSYCVFSNQ	10	Unmodified	_VGSYCVFSNQ_					0	0	0		ENSG00000242372|ENST00000374450|EIF6;nc|ENSG00000242372|P56537-2|EIF6	ENSG00000242372|ENST00000374450|EIF6	ENSG00000242372|ENST00000374450|EIF6	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	368.499058	1102.47534	0.28583	0.00010533	0.66765	0.00024603	0.95348	0.00035136	368.49927316563026	61.645	0.61274	61.645	61.382	61.994	0	0.040188	0.00012195	NaN	11.518	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2864300			58409	9796	42612	42945							-0.07179370567837395
VGTDYGFLFGG	11	Unmodified	_VGTDYGFLFGG_					0	0	0			REV__ENSG00000151229|ENST00000280871|SLC2A13	REV__ENSG00000151229|ENST00000280871|SLC2A13	MSMS	A375_MHC_IP_R1	1	566.6875610351562	2	566.769114	1131.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.3	1	38.3	37.8	38.8	0								0	0	0	0.13869	1	12980	12980		27.629	0.40557	1		+		58410	19744	42613	42946	56975	56975					-0.03682553656290111
VGTELYWY	8	Unmodified	_VGTELYWY_					0	0	0			REV__tr|U7SUZ2|U7SUZ2_FUSNUGlycogendebranchingenzymeGlgXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01446PE=4SV=1	REV__tr|U7SUZ2|U7SUZ2_FUSNUGlycogendebranchingenzymeGlgXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01446PE=4SV=1	MSMS	A375_MHC_IP_R1	1	515.8125	2	515.74765	1029.48075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.071	1	22.071	21.571	22.571	0								0	0	0	0.16876	1	5885	5885		0.79363	0	1		+		58411	28573	42614	42947	56976	56976					-0.03281323713713391
VGTELYWY	8	Unmodified	_VGTELYWY_					0	0	0			REV__tr|U7SUZ2|U7SUZ2_FUSNUGlycogendebranchingenzymeGlgXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01446PE=4SV=1	REV__tr|U7SUZ2|U7SUZ2_FUSNUGlycogendebranchingenzymeGlgXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01446PE=4SV=1	MSMS	A375_MHC_IP_R2	2	515.812255859375	2	515.74765	1029.48075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.882	1	22.501	22.001	23.001	0.61932								0	0	0	0.16876	1	6920	6920		0.79363	0	1		+		58412	28573	42614	42947	56977	56977					-0.03281323713713391
VGTETLKQN	9	Unmodified	_VGTETLKQN_					0	0	0			REV__ENST00000454534.1_1_22:32287342-32287417:-|nuORF	REV__ENST00000454534.1_1_22:32287342-32287417:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	495.18182373046875	2	495.266739	988.518924	-1.1741	-0.0005815	-0.028799	-1.4263E-05	-1.2029	-0.00059577	495.2666974403178	28.81	0.34825	29.509	29.333	29.681	0.69872					10	6	2	0	0	0	0.51106	1	9916	9916		19.257	0	1	17098000	+		58413	24921	42615	42948	56978	56978					0.024205622009503713
VGTEYDYWT	9	Unmodified	_VGTEYDYWT_					0	0	0			REV__ENSG00000257743|ENST00000477922|MGAM2	REV__ENSG00000257743|ENST00000477922|MGAM2	MULTI-SECPEP	A375_MHC_IP_R2	2	567.6785888671875	2	567.242929	1132.47131	-0.51971	-0.0002948	-1.4841	-0.00084183	-2.0038	-0.0011366	567.2420688998117	70.929	1.163	71.663	71.302	72.465	0.73421					25	22	2	0	0	0	0.55359	1	26784	26784		28.487	6.7402	1	3270700	+		58414	22893	42616	42949	56979	56979					-0.08963136789907367
VGTFSISVL	9	Unmodified	_VGTFSISVL_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-SECPEP	A375_MHC_IP_R1	1	461.1396789550781	2	461.765843	921.517133	-0.6303	-0.00029105	1.8452	0.00085204	1.2149	0.00056099	461.7659133836875	68.206	0.86137	68.206	67.5	68.361	0					20	16	2	0	0	0	0.43707	1	24725	24725		21.747	5.8995	1	1145100			58415	1419	42617	42950	56980	56980					0.053235531830068794
VGTGFGSK	8	Unmodified	_VGTGFGSK_					0	0	0		ENST00000508232.1_1_6:43603609-43604431:+|nuORF	ENST00000508232.1_1_6:43603609-43604431:+|nuORF	ENST00000508232.1_1_6:43603609-43604431:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	377.1003723144531	2	376.700503	751.386454	0.20632	7.7719E-05	0.019644	7.3998E-06	0.22596	8.5119E-05	376.7004408916141	32.219	0.71137	32.219	31.973	32.684	0					31	13	4	0	0	0	0.77717	1	10366	10366		5.2307	0	1	20186000			58416	12873	42618	42951	56981	56981					0.0008158225481338377
VGTGNQLVTF	10	Unmodified	_VGTGNQLVTF_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	MULTI-SECPEP	A375_MHC_IP_R2	2	518.6765747070312	2	518.277106	1034.53966	-0.96626	-0.00050079	0.65022	0.00033699	-0.31605	-0.0001638	518.277405500678	49.384	0.6576	50.142	49.69	50.348	0.75736					20	12	2	0	0	0	0.37864	1	18575	18575		45.7	11.298	1	2603900			58417	5090	42619	42952	56982	56982					0.023771525806068894
VGTGPGAA	8	Unmodified	_VGTGPGAA_					0	0	0			REV__ENSG00000173273|ENST00000310430|TNKS	REV__ENSG00000173273|ENST00000310430|TNKS	MULTI-SECPEP	A375_MHC_IP_R1	1	628.7714233398438	1	629.325316	628.31804	-0.92706	-0.00058342	1.7683	0.0011128	0.84124	0.00052942	629.3277414778207	137.28	0.3112	137.28	137.13	137.44	0					10	5	3	0	0	0	0.972	1	52830	52830		2.5775	0	1	1346800	+		58418	21212	42620	42953	56983	56983					-0.010986623250573757
VGTITDDVW	9	Unmodified	_VGTITDDVW_					0	0	0		ENST00000416734.1_1_7:121080890-121081274:-|nuORF	ENST00000416734.1_1_7:121080890-121081274:-|nuORF	ENST00000416734.1_1_7:121080890-121081274:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	503.68951416015625	2	503.248015	1004.48148	-0.19298	-9.7119E-05	0.1526	7.6796E-05	-0.040384	-2.0323E-05	503.24773795731056	71.865	1.9782	71.865	70.698	72.676	0					57	38	2	0	0	0	0.2264	2	26101	26101;26211		36.044	12.896	1	2068100			58419	11695	42621	42954	56984;56985	56984					-0.020585290646749854
VGTITDDVW	9	Unmodified	_VGTITDDVW_					0	0	0		ENST00000416734.1_1_7:121080890-121081274:-|nuORF	ENST00000416734.1_1_7:121080890-121081274:-|nuORF	ENST00000416734.1_1_7:121080890-121081274:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	503.19183349609375	2	503.248015	1004.48148	-0.31141	-0.00015672	-0.55453	-0.00027907	-0.86594	-0.00043578	503.74998958148575	88.216	0.71428	88.216	87.949	88.663	0					26	13	3	0	0	0	0.55818	1	32364	32364		16.942	4.4107	1	2171500			58420	11695	42621	42954	56986	56986					-0.020585290646749854
VGTITDDVW	9	Unmodified	_VGTITDDVW_					0	0	0		ENST00000416734.1_1_7:121080890-121081274:-|nuORF	ENST00000416734.1_1_7:121080890-121081274:-|nuORF	ENST00000416734.1_1_7:121080890-121081274:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	503.6897888183594	2	503.248015	1004.48148	-0.74887	-0.00037687	-1.9331E-05	-9.7285E-09	-0.74889	-0.00037688	503.2477877377982	70.896	2.1783	71.63	70.591	72.77	0.73421					58	42	2	0	0	0	0.43185	1	26887	26887		23.148	5.0134	1	2856700			58421	11695	42621	42954	56987	56987					-0.020585290646749854
VGTITDDVW	9	Unmodified	_VGTITDDVW_					0	0	0		ENST00000416734.1_1_7:121080890-121081274:-|nuORF	ENST00000416734.1_1_7:121080890-121081274:-|nuORF	ENST00000416734.1_1_7:121080890-121081274:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1005.8873901367188	1	1005.48875	1004.48148	-0.16964	-0.00017057	-0.30955	-0.00031125	-0.4792	-0.00048183	1005.4881595235516	71.263	2.3301	71.997	70.844	73.174	0.73421					59	45	2	0	0	0	0.11296	1	27323	27323		48.346	26.599	1	3001100			58422	11695	42621	42954	56988	56988					-0.020585290646749854
VGTITDDVW	9	Unmodified	_VGTITDDVW_					0	0	0		ENST00000416734.1_1_7:121080890-121081274:-|nuORF	ENST00000416734.1_1_7:121080890-121081274:-|nuORF	ENST00000416734.1_1_7:121080890-121081274:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	503.68975830078125	2	503.248015	1004.48148	-0.56255	-0.0002831	-0.10674	-5.3718E-05	-0.6693	-0.00033682	503.7501201628406	87.453	0.91151	88.185	87.811	88.722	0.7318					35	17	3	0	0	0	0.25276	2	33305	33305;33403		34.102	34.102	1	1910300			58423	11695	42621	42954	56989;56990	56989					-0.020585290646749854
VGTITDDVW	9	Unmodified	_VGTITDDVW_					0	0	0		ENST00000416734.1_1_7:121080890-121081274:-|nuORF	ENST00000416734.1_1_7:121080890-121081274:-|nuORF	ENST00000416734.1_1_7:121080890-121081274:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	503.6477966308594	2	503.248015	1004.48148	-0.60297	-0.00030344	-0.25833	-0.00013	-0.8613	-0.00043345	503.2479787817449	73.406	0.76361	74.142	73.633	74.396	0.73541					29	14	3	0	0	0	0.10969	1	27806	27806		48.346	19.859	1	2125300			58424	11695	42621	42954	56991	56991					-0.020585290646749854
VGTITDDVW	9	Unmodified	_VGTITDDVW_					0	0	0		ENST00000416734.1_1_7:121080890-121081274:-|nuORF	ENST00000416734.1_1_7:121080890-121081274:-|nuORF	ENST00000416734.1_1_7:121080890-121081274:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	1005.48875	1004.48148	0.37247	0.00037451	-0.33453	-0.00033637	0.037939	3.8147E-05	1005.4883262144087	71.664	2.536	71.664	70.648	73.184	0	-0.16652	-9.6863E-06	NaN	48.346	77	49	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2983400			58425	11695	42621	42954							-0.020585290646749854
VGTIVPPP	8	Unmodified	_VGTIVPPP_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MULTI-SECPEP	A375_MHC_IP_R1	1	390.617431640625	2	390.236722	778.45889	0.20908	8.1592E-05	-3.175	-0.001239	-2.9659	-0.0011574	390.2345553849604	102.8	0.30501	102.8	102.66	102.96	0					6	5	2	0	0	0	0.972	1	37744	37744		0.69038	0	1	186540			58426	6229	42622	42955	56992	56992					0.06079916328371837
VGTKFPVKW	9	Unmodified	_VGTKFPVKW_					0	0	0		ENSG00000102010|ENST00000348343|BMX;chrX:15507409-15508345|105|27.47|0.32|6.44|+|ENST00000342014|BMX,BMX	ENSG00000102010|ENST00000348343|BMX	ENSG00000102010|ENST00000348343|BMX	MULTI-MSMS	A375_MHC_IP_R1	1	354.94268798828125	3	354.542927	1060.60695	-0.11424	-4.0503E-05	-0.014536	-5.1537E-06	-0.12878	-4.5657E-05	354.54289565757324	58.691	0.66242	58.691	58.379	59.041	0					22	12	2	0	0	0	0.75251	1	21046	21046		1.1933	0	1	5107900			58427	527	42623	42956	56993	56993					0.07907227582222731
VGTKWRQDEKL	11	Unmodified	_VGTKWRQDEKL_					0	0	0			REV__ENST00000398956.2_1_21:38868526-38877611:+|nuORF	REV__ENST00000398956.2_1_21:38868526-38877611:+|nuORF	MSMS	A375_MHC_IP_R2	2	680.1522216796875	2	680.372601	1358.73065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.58	1	126.86	126.36	127.36	0.28571								0	0	0	0.1624	1	49529	49529		6.2058	0	1		+		58428	24382	42624	42957	56994	56994					0.06563233891893105
VGTLERYTV	9	Unmodified	_VGTLERYTV_					0	0	0		nc|ENSG00000183853|Q96J84-3|KIRREL1;ENSG00000183853|ENST00000359209|KIRREL1;nc|ENSG00000183853|Q96J84-2|KIRREL1	nc|ENSG00000183853|Q96J84-3|KIRREL1	nc|ENSG00000183853|Q96J84-3|KIRREL1	MULTI-SECPEP	A375_MHC_IP_R1	1	519.6608276367188	2	519.284931	1036.55531	-0.53167	-0.00027609	0.51515	0.00026751	-0.016521	-8.5794E-06	519.2853382010934	64.115	0.91324	64.115	63.837	64.75	0					32	17	3	0	0	0	0.4261	1	23199	23199		30.637	0	1	6741100			58429	8537	42625	42958	56995	56995					0.03849439097643881
VGTLERYTV	9	Unmodified	_VGTLERYTV_					0	0	0		nc|ENSG00000183853|Q96J84-3|KIRREL1;ENSG00000183853|ENST00000359209|KIRREL1;nc|ENSG00000183853|Q96J84-2|KIRREL1	nc|ENSG00000183853|Q96J84-3|KIRREL1	nc|ENSG00000183853|Q96J84-3|KIRREL1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.6605834960938	2	519.284931	1036.55531	-0.6266	-0.00032539	-0.055551	-2.8847E-05	-0.68215	-0.00035423	519.2850780152208	63.285	0.76257	64.025	63.734	64.496	0.74022					31	14	3	0	0	0	0.53748	1	24052	24052		24.021	0	1	5320200			58430	8537	42625	42958	56996	56996					0.03849439097643881
VGTLFHAV	8	Unmodified	_VGTLFHAV_					0	0	0		ENST00000462375.5_1_9:134385592-134386855:+|nuORF	ENST00000462375.5_1_9:134385592-134386855:+|nuORF	ENST00000462375.5_1_9:134385592-134386855:+|nuORF	MSMS	A375_MHC_IP_R1	1	422.2962646484375	2	422.239796	842.465038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.141	1	60.141	59.641	60.641	0								0	0	0	0.16876	1	21649	21649		34.187	7.3037	1				58431	12201	42626	42959	56997	56997					0.037504345598904365
VGTLIPAPG	9	Unmodified	_VGTLIPAPG_					0	0	0		tr|U7T4W4|U7T4W4_FUSNUProteintranslocasesubunitSecYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secYPE=3SV=1	tr|U7T4W4|U7T4W4_FUSNUProteintranslocasesubunitSecYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secYPE=3SV=1	tr|U7T4W4|U7T4W4_FUSNUProteintranslocasesubunitSecYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secYPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	825.1559448242188	1	824.48763	823.480354	-0.65901	-0.00054334	2.5049	0.0020653	1.8459	0.0015219	824.4853866514875	117.02	0.25594	117.68	117.53	117.79	0.65962					6	4	2	0	0	0	0.77244	1	44304	44304		2.3027	2.3027	1	2267400			58432	30005	42627	42960	56998	56998					0.06155301357091503
VGTLMFGPLC	10	Unmodified	_VGTLMFGPLC_					0	0	0		ENSG00000172940|ENST00000311856|SLC22A13;nc|ENSG00000172940|Q9Y226-2|SLC22A13	ENSG00000172940|ENST00000311856|SLC22A13	ENSG00000172940|ENST00000311856|SLC22A13	MULTI-MSMS	A375_MHC_IP_R2	2	519.8636474609375	2	519.261556	1036.50856	-0.61907	-0.00032146	-0.77575	-0.00040282	-1.3948	-0.00072427	519.260994525278	79.695	0.45998	80.44	80.299	80.759	0.74474					12	8	2	0	0	0	0.71866	1	30258	30258		3.9444	1.6417	1	2449400			58433	7750	42628	42961	56999	56999					-0.008234600494915867
VGTLPPIH	8	Unmodified	_VGTLPPIH_					0	0	0		tr|U7T5V1|U7T5V1_FUSNUIron-sulfurcluster-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00170PE=4SV=1	tr|U7T5V1|U7T5V1_FUSNUIron-sulfurcluster-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00170PE=4SV=1	tr|U7T5V1|U7T5V1_FUSNUIron-sulfurcluster-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00170PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	833.6729125976562	1	833.487965	832.480688	-0.7552	-0.00062945	3.307	0.0027563	2.5518	0.0021269	833.4928121394075	122.98	0.30663	123.35	123.12	123.43	0.3766					6	5	2	0	0	0	0.972	1	47169	47169		2.8892	0	1	22666000			58434	30030	42629	42962	57000	57000					0.05774721076943479
VGTLWAFLSL	10	Unmodified	_VGTLWAFLSL_					0	0	0		nc|ENSG00000182508|Q86WI0-2|LHFPL1;ENSG00000182508|ENST00000371968|LHFPL1	nc|ENSG00000182508|Q86WI0-2|LHFPL1	nc|ENSG00000182508|Q86WI0-2|LHFPL1	MSMS	A375_MHC_IP_R2	2	369.4446105957031	3	369.546337	1105.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.227	1	25.87	25.37	26.37	0.64368								0	0	0	0.15308	1	8406	8406		6.1918	0.78914	1				58435	8412	42630	42963	57001	57001					0.06859790516796238
VGTLWNSI	8	Unmodified	_VGTLWNSI_					0	0	0		ENSG00000115616|ENST00000233969|SLC9A2	ENSG00000115616|ENST00000233969|SLC9A2	ENSG00000115616|ENST00000233969|SLC9A2	MSMS	A375_MHC_IP_R1	1	445.640869140625	2	445.242535	888.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.846	1	76.846	76.346	77.346	0								0	0	0	0.16876	1	28019	28019		2.5775	0	1				58436	3327	42631	42964	57002	57002					0.021821133516937152
VGTLWTPVNY	10	Unmodified	_VGTLWTPVNY_					0	0	0			REV__tr|U7SH34|U7SH34_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02311PE=3SV=1	REV__tr|U7SH34|U7SH34_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02311PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	575.73486328125	2	575.300581	1148.58661	-0.47653	-0.00027415	-4.0291	-0.002318	-4.5057	-0.0025921	575.2978799603532	49.436	0.30241	50.193	49.995	50.297	0.75737					9	5	2	0	0	0	0.8125	1	18502	18502		24.021	13.197	1	778570	+		58437	28198	42632	42965	57003	57003					0.018260121317553057
VGTNLVRL	8	Unmodified	_VGTNLVRL_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MSMS	A375_MHC_IP_R1	1	436.6714782714844	2	436.271627	870.528701	-0.18076	-7.8859E-05	0.1528	6.6661E-05	-0.02796	-1.2198E-05	436.27157267580503	57.982	0.60833	57.982	57.72	58.328	0					18	11	2	0	0	0	0.16365	1	20829	20829		81.89	9.9679	1	2305800			58438	1476	42633	42966	57004	57004					0.0882579499698295
VGTPGRVI	8	Unmodified	_VGTPGRVI_					0	0	0		tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1	tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1	tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	399.2676086425781	2	399.745245	797.475937	-0.18622	-7.4441E-05	0.54847	0.00021925	0.36225	0.00014481	399.7454048143732	33.823	0.30238	33.823	33.648	33.95	0					8	5	2	0	0	0	0.95423	1	11076	11076		18.135	7.3111	1	1567600			58439	29468	42634	42967	57005	57005					0.06909836934175928
VGTPGRVI	8	Unmodified	_VGTPGRVI_					0	0	0		tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1	tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1	tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	399.745245	797.475937	-0.13601	-5.4369E-05	-0.21129	-8.4464E-05	-0.3473	-0.00013883	399.7451562961619	32.96	0.30608	33.696	33.518	33.825	0.73692	-0.063083	-0.00032649	NaN	18.135	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1520000			58440	29468	42634	42967							0.06909836934175928
VGTPTQPRH	9	Unmodified	_VGTPTQPRH_					0	0	0			REV__ENST00000409299.7_1_20:32295381-32295504:-|nuORF	REV__ENST00000409299.7_1_20:32295381-32295504:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	497.1669921875	2	496.76724	991.519927	-0.75467	-0.0003749	0.020788	1.0327E-05	-0.73388	-0.00036457	496.7672072981252	19.159	0.45169	19.762	19.483	19.935	0.60308					14	8	3	0	0	0	0.58047	1	5868	5868		15.847	0	1	3539900	+		58441	24466	42635	42968	57006	57006					0.023828213605156634
VGTPTRLRAF	10	Unmodified	_VGTPTRLRAF_					0	0	0		ENST00000370784.8_1_X:133941481-133941562:+|nuORF	ENST00000370784.8_1_X:133941481-133941562:+|nuORF	ENST00000370784.8_1_X:133941481-133941562:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	558.6920166015625	2	559.327465	1116.64038	-0.72885	-0.00040767	1.9813	0.0011082	1.2525	0.00070055	559.8292954971865	81.99	0.25502	82.733	82.584	82.839	0.74293					6	4	2	0	0	0	0.90853	1	31138	31138		15.847	5.7733	1	2901200			58442	11158	42636	42969	57007	57007					0.08672229354124283
VGTRLLTVKA	10	Unmodified	_VGTRLLTVKA_					0	0	0		nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4;PCDHGA4|p.P287L|1|0.37|ENSG00000262576|chr5:141355967-141355967|C/T|missense_variant	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;PCDHGA4|p.P287L|1|0.37|ENSG00000262576|chr5:141355967-141355967|C/T|missense_variant	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MULTI-SECPEP	A375_MHC_IP_R2	2	352.6100158691406	3	353.229119	1056.66553	-0.4709	-0.00016633	0.58289	0.00020589	0.11199	3.9559E-05	353.56350481321607	23.959	0.15463	24.589	24.485	24.64	0.63014					4	2	2	0	0	0	0.94651	1	7742	7742		1.7423	0.28716	1	745140			58443	9947;15138	42637	42970	57008	57008					0.13946284156713773
VGTRTVFV	8	Unmodified	_VGTRTVFV_					0	0	0		nc|ENSG00000101974|Q8NB49-2|ATP11C;nc|ENSG00000101974|Q8NB49-3|ATP11C;nc|ENSG00000101974|Q8NB49-4|ATP11C;ENSG00000101974|ENST00000682941|ATP11C;nc|ENSG00000101974|Q8NB49|ATP11C	nc|ENSG00000101974|Q8NB49-2|ATP11C	nc|ENSG00000101974|Q8NB49-2|ATP11C	MULTI-MSMS	A375_MHC_IP_R2	2	440.1579895019531	2	439.758352	877.502152	-0.60653	-0.00026673	-0.17602	-7.7405E-05	-0.78255	-0.00034413	439.7583216428061	58.205	0.40623	58.954	58.729	59.135	0.74894					11	7	2	0	0	0	0.74466	1	22056	22056		21.747	1.293	1	1270500			58444	2341	42638	42971	57009	57009					0.05850106105663144
VGTSLVSSV	9	Unmodified	_VGTSLVSSV_					0	0	0			REV__nc|ENSG00000115806|Q9H8Y8-2|GORASP2	REV__nc|ENSG00000115806|Q9H8Y8-2|GORASP2	MULTI-MSMS	A375_MHC_IP_R2	2	848.7452392578125	1	848.472374	847.465098	-0.58488	-0.00049626	0.30088	0.00025529	-0.284	-0.00024097	848.4726003312323	90.044	1.223	90.776	90.391	91.614	0.7318					57	23	4	0	0	0	0.067501	1	34488	34488		57.471	5.203	1	101980000	+		58445	17913	42639	42972	57010	57010					0.03526389769240268
VGTSLVSSV	9	Unmodified	_VGTSLVSSV_					0	0	0			REV__nc|ENSG00000115806|Q9H8Y8-2|GORASP2	REV__nc|ENSG00000115806|Q9H8Y8-2|GORASP2	MULTI-MATCH	A375_MHC_IP_R1	1		1	848.472374	847.465098	-0.56341	-0.00047804	-0.22963	-0.00019483	-0.79304	-0.00067287	848.4721436430095	90.871	1.369	90.871	90.488	91.857	0	0.047308	-0.00019077	NaN	57.471	65	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94682000	+		58446	17913	42639	42972							0.03526389769240268
VGTSLVSSV	9	Unmodified	_VGTSLVSSV_					0	0	0			REV__nc|ENSG00000115806|Q9H8Y8-2|GORASP2	REV__nc|ENSG00000115806|Q9H8Y8-2|GORASP2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	848.472374	847.465098	-0.58488	-0.00049626	0.30088	0.00025529	-0.284	-0.00024097	848.4726003312323	90.044	1.223	90.776	90.391	91.614	0.7318	-0.047308	0.00025935	NaN	57.471	57	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101980000	+		58447	17913	42639	42972							0.03526389769240268
VGTVLNQHAPI	11	Unmodified	_VGTVLNQHAPI_					0	0	0			REV__ENSG00000136875|ENST00000374198|PRPF4	REV__ENSG00000136875|ENST00000374198|PRPF4	MULTI-SECPEP	A375_MHC_IP_R1	1	383.95086669921875	3	383.552262	1147.63496	0.19041	7.3034E-05	-2.1148	-0.00081112	-1.9244	-0.00073809	383.5514279181796	19.546	0.71182	19.546	19.268	19.98	0					21	12	2	0	0	0	0.86796	1	4889	4889		12.228	3.2513	1	4717200	+		58448	18966	42640	42973	57011	57011					0.0670450577167685
VGTVNAAPG	9	Unmodified	_VGTVNAAPG_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	A375_MHC_IP_R2	2	785.5294799804688	1	785.415194	784.407917	-0.94989	-0.00074606	-1.8752	-0.0014728	-2.8251	-0.0022189	785.4156024389745	125.45	0.1502	125.75	125.67	125.82	0.2951					4	2	2	0	0	0	0.50735	1	48944	48944		19.439	0	1	9828800			58449	1386	42641	42974	57012	57012					0.0070896728351499405
VGTVTLTI	8	Unmodified	_VGTVTLTI_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MSMS	A375_MHC_IP_R1	1	402.57965087890625	2	402.247286	802.48002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.713	1	85.713	85.213	86.213	0								0	0	0	0.16876	1	31417	31417		0.79363	0	1				58450	3128	42642	42975	57013	57013					0.0708788163723284
VGTWNVAVIV	10	Unmodified	_VGTWNVAVIV_					0	0	0			REV__nc|ENSG00000137474|Q13402-8|MYO7A;REV__ENST00000481328.7_1_11:76905078-76923312:+|nuORF	REV__nc|ENSG00000137474|Q13402-8|MYO7A	MULTI-MSMS	A375_MHC_IP_R1	1	529.7054443359375	2	529.305667	1056.59678	-0.6146	-0.00032531	-0.26687	-0.00014125	-0.88147	-0.00046656	529.3055694447412	87.421	0.66382	87.421	87.083	87.747	0					25	12	3	0	0	0	0.13478	1	32043	32043		56.177	0	1	6148500	+		58451	19009;25259	42643	42976	57014	57014					0.07074619856962272
VGVAEVKK	8	Unmodified	_VGVAEVKK_					0	0	0		PNPLA1|p.T164Dfs*101|1|0.49|ENSG00000180316|chr6:36293104-36293105|-/C|frameshift_variant;nc|ENSG00000180316|Q8N8W4|PNPLA1;ENSG00000180316|ENST00000636260|PNPLA1	PNPLA1|p.T164Dfs*101|1|0.49|ENSG00000180316|chr6:36293104-36293105|-/C|frameshift_variant	PNPLA1|p.T164Dfs*101|1|0.49|ENSG00000180316|chr6:36293104-36293105|-/C|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	415.66131591796875	2	415.260728	828.506903	0.39314	0.00016326	1.707	0.00070884	2.1001	0.00087209	415.2613132329038	128.51	0.25258	128.51	128.33	128.58	0					7	4	2	0	0	0	0.77839	1	49377	49377		0.79363	0	1	6888000			58452	8288	42644	42977	57015	57015					0.08578990248417995
VGVAGSGA	8	Unmodified	_VGVAGSGA_					0	0	0		ENST00000497075.5_1_2:176043783-176046391:-|nuORF;ENSG00000154518|ENST00000284727|ATP5MC3;ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1;ENSG00000135390|ENST00000394349|ATP5MC2;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2;ENST00000433580.1_1_1:209441145-209441361:-|nuORF	ENST00000497075.5_1_2:176043783-176046391:-|nuORF	ENST00000497075.5_1_2:176043783-176046391:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	617.2640991210938	1	617.325316	616.31804	-0.46318	-0.00028593	-1.4194	-0.0008762	-1.8825	-0.0011621	617.3245056355787	141.65	0.56392	141.69	141.27	141.84	0.04216					14	10	2	0	0	0	0.77839	1	55430	55430		0.79363	0	1	1715600			58453	6093	42645	42978	57016	57016					-0.005466623250526936
VGVAMILP	8	Unmodified	_VGVAMILP_					0	0	0		ENST00000473764.5_1_X:48755552-48755627:+|nuORF	ENST00000473764.5_1_X:48755552-48755627:+|nuORF	ENST00000473764.5_1_X:48755552-48755627:+|nuORF	MSMS	A375_MHC_IP_R1	1	400.1385803222656	2	400.24095	798.467346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.285	1	93.285	92.785	93.785	0								0	0	0	0.16876	1	34290	34290		2.8892	0	1				58454	12396	42646	42979	57017	57017					0.0600514697333665
VGVANPVP	8	Unmodified	_VGVANPVP_					0	0	0		nc|ENSG00000085185|Q5H9F3-4|BCORL1;nc|ENSG00000085185|Q5H9F3-1|BCORL1;ENSG00000085185|ENST00000540052|BCORL1	nc|ENSG00000085185|Q5H9F3-4|BCORL1	nc|ENSG00000085185|Q5H9F3-4|BCORL1	MSMS	A375_MHC_IP_R1	1	377.1177978515625	2	376.718696	751.422839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.571	1	95.571	95.071	96.071	0								0	0	0	0.16876	1	35128	35128		2.8892	0.58649	1				58455	1807	42647	42980	57018	57018					0.03718459151514253
VGVAQRRG	8	Unmodified	_VGVAQRRG_					0	0	0			REV__ENSG00000282936|ENST00000634965|unknown	REV__ENSG00000282936|ENST00000634965|unknown	MULTI-MSMS	A375_MHC_IP_R1	1	422.6777038574219	2	421.751393	841.488233	0.043421	1.8313E-05	0.028197	1.1892E-05	0.071618	3.0205E-05	421.7513758274805	99.081	1.7281	99.081	97.54	99.268	0					58	33	3	0	0	0	0.77839	1	36329	36329		0.79363	0	1	2989800	+		58456	22994	42648	42981	57019	57019					0.061148733972345326
VGVAQRRG	8	Unmodified	_VGVAQRRG_					0	0	0			REV__ENSG00000282936|ENST00000634965|unknown	REV__ENSG00000282936|ENST00000634965|unknown	MULTI-MSMS	A375_MHC_IP_R1	1	422.1510009765625	2	421.751393	841.488233	0.064785	2.7323E-05	0.17345	7.3152E-05	0.23823	0.00010048	421.7513987130628	102.43	1.0628	102.43	101.9	102.96	0					32	20	2	0	0	0	0.77839	1	37602	37602		0.79363	0	1	2891100	+		58457	22994	42648	42981	57020	57020					0.061148733972345326
VGVAQRRG	8	Unmodified	_VGVAQRRG_					0	0	0			REV__ENSG00000282936|ENST00000634965|unknown	REV__ENSG00000282936|ENST00000634965|unknown	MULTI-SECPEP	A375_MHC_IP_R1	1	422.1513671875	2	421.751393	841.488233	0.073792	3.1122E-05	0.22825	9.6263E-05	0.30204	0.00012739	421.7513457102775	101.32	0.96161	101.32	101.09	102.05	0					33	18	2	0	0	0	0.972	1	37368	37368		0.79363	0	1	3237200	+		58458	22994	42648	42981	57021	57021					0.061148733972345326
VGVAQRRG	8	Unmodified	_VGVAQRRG_					0	0	0			REV__ENSG00000282936|ENST00000634965|unknown	REV__ENSG00000282936|ENST00000634965|unknown	MULTI-MSMS	A375_MHC_IP_R2	2	422.1513671875	2	421.751393	841.488233	0.023807	1.0041E-05	0.65495	0.00027622	0.67875	0.00028626	421.7514491991099	101.16	0.97458	101.93	101.08	102.06	0.76428					47	18	4	0	0	0	0.77781	1	38351	38351		2.8892	0	1	2761300	+		58459	22994	42648	42981	57022	57022					0.061148733972345326
VGVAQRRG	8	Unmodified	_VGVAQRRG_					0	0	0			REV__ENSG00000282936|ENST00000634965|unknown	REV__ENSG00000282936|ENST00000634965|unknown	MULTI-MSMS	A375_MHC_IP_R2	2	422.15142822265625	2	421.751393	841.488233	-0.071899	-3.0323E-05	0.23096	9.7407E-05	0.15906	6.7084E-05	421.7513936490716	101.78	1.8291	102.54	102.06	103.89	0.76428					59	35	2	0	0	0	0.77781	1	38836	38836		2.8892	0	1	4478300	+		58460	22994	42648	42981	57023	57023					0.061148733972345326
VGVAQRRG	8	Unmodified	_VGVAQRRG_					0	0	0			REV__ENSG00000282936|ENST00000634965|unknown	REV__ENSG00000282936|ENST00000634965|unknown	MULTI-SECPEP	A375_MHC_IP_R2	2	422.15118408203125	2	421.751393	841.488233	0.023807	1.0041E-05	0.65495	0.00027622	0.67875	0.00028626	421.7514491991099	101.16	0.97458	101.93	101.08	102.06	0.76428					47	18	4	0	0	0	0.972	1	38145	38145		2.8892	0	1	2761300	+		58461	22994	42648	42981	57024	57024					0.061148733972345326
VGVAQRRG	8	Unmodified	_VGVAQRRG_					0	0	0			REV__ENSG00000282936|ENST00000634965|unknown	REV__ENSG00000282936|ENST00000634965|unknown	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	421.751393	841.488233	-0.17886	-7.5433E-05	0.38692	0.00016318	0.20806	8.7751E-05	421.7514540088789	98.008	1.5773	98.768	97.826	99.403	0.75977	-0.15667	0.00014212	NaN	0.79363	54	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3400600	+		58462	22994	42648	42981							0.061148733972345326
VGVARERG	8	Unmodified	_VGVARERG_					0	0	0			REV__ENST00000542165.1_1_11:94706537-94706621:-|nuORF	REV__ENST00000542165.1_1_11:94706537-94706621:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	422.6431884765625	2	422.243401	842.472249	-0.024436	-1.0318E-05	0.11661	4.9236E-05	0.092169	3.8918E-05	422.24340149130023	90.268	1.6283	91	89.985	91.614	0.7318					44	31	2	0	0	0	0.77781	1	34326	34326		2.8892	0	1	1603300	+		58463	25963	42649	42982	57025	57025					0.044711671603295144
VGVARERG	8	Unmodified	_VGVARERG_					0	0	0			REV__ENST00000542165.1_1_11:94706537-94706621:-|nuORF	REV__ENST00000542165.1_1_11:94706537-94706621:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	422.243401	842.472249	-0.23614	-9.971E-05	0.21127	8.9209E-05	-0.02487	-1.0501E-05	422.24340363334113	90.999	0.81197	90.999	90.437	91.249	0	-0.00049246	4.4015E-05	NaN	2.8892	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	982330	+		58464	25963	42649	42982							0.044711671603295144
VGVARERG	8	Unmodified	_VGVARERG_					0	0	0			REV__ENST00000542165.1_1_11:94706537-94706621:-|nuORF	REV__ENST00000542165.1_1_11:94706537-94706621:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	422.243401	842.472249	-0.024436	-1.0318E-05	0.11661	4.9236E-05	0.092169	3.8918E-05	422.24340149130023	90.268	1.6283	91	89.985	91.614	0.7318	0.00049246	-3.5932E-05	NaN	2.8892	44	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1603300	+		58465	25963	42649	42982							0.044711671603295144
VGVARRPD	8	Unmodified	_VGVARRPD_					0	0	0			REV__nc|ENSG00000107864|Q8NE35-2|CPEB3	REV__nc|ENSG00000107864|Q8NE35-2|CPEB3	MULTI-MSMS	A375_MHC_IP_R2	2	435.6512451171875	2	435.251226	868.487899	-0.12885	-5.6081E-05	0.054031	2.3517E-05	-0.074816	-3.2564E-05	435.2511548815594	99.112	5.1421	99.871	97.877	103.02	0.75977					173	100	3	0	0	0	0.77781	1	37924	37924		2.8892	2.0956	1	4933900	+		58466	17503	42650	42983	57026	57026					0.048394536773685104
VGVASFASLW	10	Unmodified	_VGVASFASLW_					0	0	0		GPR84|p.P154S|1|0.48|ENSG00000139572|chr12:54363392-54363392|G/A|missense_variant	GPR84|p.P154S|1|0.48|ENSG00000139572|chr12:54363392-54363392|G/A|missense_variant	GPR84|p.P154S|1|0.48|ENSG00000139572|chr12:54363392-54363392|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1763305664062	2	518.776742	1035.53893	-0.88798	-0.00046067	-3.7029	-0.001921	-4.5909	-0.0023817	519.2752367015902	68.221	0.86185	68.221	67.804	68.666	0					34	16	3	0	0	0	0.76414	1	24720	24720		26.884	8.7487	1	3321800			58467	14071	42651	42984	57027	57027					0.022583579315551106
VGVATMDQPG	10	Unmodified	_VGVATMDQPG_					0	0	0		ENST00000560778.2_2_15:80493835-80494078:-|nuORF	ENST00000560778.2_2_15:80493835-80494078:-|nuORF	ENST00000560778.2_2_15:80493835-80494078:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	487.6580810546875	2	487.734217	973.453881	-0.23334	-0.00011381	0.76297	0.00037213	0.52964	0.00025832	487.7345644137685	55.354	1.7277	55.354	54.516	56.244	0					40	33	2	0	0	0	0.70496	1	19615	19615		10.074	0.6908	1	1382000			58468	13501	42652	42985	57028	57028					-0.033907555965583924
VGVATVFA	8	Unmodified	_VGVATVFA_					0	0	0		CLCNKB|p.P216S|1|0.24|ENSG00000184908|chr1:16048573-16048573|C/T|missense_variant;nc|ENSG00000186510|P51800-2|CLCNKA;nc|ENSG00000186510|P51800-3|CLCNKA;ENSG00000186510|ENST00000331433|CLCNKA;ENSG00000184908|ENST00000375679|CLCNKB	CLCNKB|p.P216S|1|0.24|ENSG00000184908|chr1:16048573-16048573|C/T|missense_variant	CLCNKB|p.P216S|1|0.24|ENSG00000184908|chr1:16048573-16048573|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	382.6201171875	2	382.221072	762.42759	0.58052	0.00022189	-0.046606	-1.7814E-05	0.53391	0.00020407	382.21987745779734	108.3	1.2675	108.3	107.75	109.02	0					44	24	3	0	0	0	0.77781	1	39781	39781		2.8892	0	1	1500900			58469	535	42653	42986	57029	57029					0.0368734329426843
VGVAVGRNQ	9	Unmodified	_VGVAVGRNQ_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	A375_MHC_IP_R1	1	450.656494140625	2	450.256508	898.498464	0.061712	2.7786E-05	-0.14117	-6.3561E-05	-0.079454	-3.5775E-05	450.25637859553416	111.68	2.2427	111.68	110.8	113.04	0					91	43	3	0	0	0	0.80005	1	40670	40670		2.0598	0	1	10089000	+		58470	16777	42654	42987	57030	57030					0.04515436331791989
VGVAVTVEV	9	Unmodified	_VGVAVTVEV_					0	0	0		ENSG00000166948|ENST00000202625|TGM6;TGM6|p.M617I|1|0.27|ENSG00000166948|chr20:2430911-2430911|G/A|missense_variant	ENSG00000166948|ENST00000202625|TGM6	ENSG00000166948|ENST00000202625|TGM6	MULTI-MSMS	A375_MHC_IP_R2	2	872.908447265625	1	872.50876	871.501483	-0.49371	-0.00043076	0.33089	0.0002887	-0.16282	-0.00014206	872.5089608986578	83.948	1.3237	84.688	84.305	85.629	0.73962					57	25	4	0	0	0	0.03497	1	32211	32211		70.716	0	1	82686000			58471	7138	42655	42988	57031	57031					0.0605926666595451
VGVCAFVRV	9	Unmodified	_VGVCAFVRV_					0	0	0		ENSG00000002016|ENST00000358495|RAD52;ENST00000481052.5_1_12:1036415-1039134:-|nuORF;nc|ENSG00000002016|P43351-3|RAD52;ENST00000463750.5_1_12:1025794-1039020:-|nuORF;ENST00000228345.9_1_12:1034631-1039134:-|nuORF;nc|ENSG00000002016|P43351-2|RAD52	ENSG00000002016|ENST00000358495|RAD52	ENSG00000002016|ENST00000358495|RAD52	MULTI-SECPEP	A375_MHC_IP_R1	1	475.1665344238281	2	475.26803	948.521507	-0.96416	-0.00045824	0.8616	0.00040949	-0.10257	-4.8746E-05	475.2685139811242	29.218	0.30639	29.218	28.996	29.302	0					7	5	2	0	0	0	0.74651	1	9125	9125		13.508	5.5977	1	2760500			58472	852	42656	42989	57032	57032					0.04518739124910098
VGVDRNKY	8	Unmodified	_VGVDRNKY_					0	0	0		nc|ENSG00000161057|P35998-2|PSMC2;ENSG00000161057|ENST00000292644|PSMC2	nc|ENSG00000161057|P35998-2|PSMC2	nc|ENSG00000161057|P35998-2|PSMC2	MULTI-MSMS	A375_MHC_IP_R2	2	476.5979309082031	2	475.756341	949.498129	-0.56415	-0.0002684	-0.07009	-3.3346E-05	-0.63424	-0.00030174	475.7562472292486	30.938	0.70936	31.657	31.367	32.077	0.71857					32	13	3	0	0	0	0.7754	1	10809	10809		11.64	0.81637	1	19769000			58473	6463	42657	42990	57033	57033					0.021360166119393398
VGVECSHH	8	Unmodified	_VGVECSHH_					0	0	0		ENST00000489651.5_1_22:20928956-20929091:+|nuORF	ENST00000489651.5_1_22:20928956-20929091:+|nuORF	ENST00000489651.5_1_22:20928956-20929091:+|nuORF	MSMS	A375_MHC_IP_R1	1	434.1939392089844	2	434.192519	866.370486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.181	1	87.181	86.681	87.681	0								0	0	0	0.16876	1	31985	31985		6.3541	0	1				58474	12635	42658	42991	57034	57034					-0.06804447253750823
VGVEWGGAPAA	11	Unmodified	_VGVEWGGAPAA_					0	0	0			REV__ENST00000262958.3_1_19:3163029-3163218:+|nuORF	REV__ENST00000262958.3_1_19:3163029-3163218:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	507.7265319824219	2	507.256174	1012.49779	-0.80374	-0.0004077	-0.39107	-0.00019837	-1.1948	-0.00060607	507.25581453371626	45.294	0.45568	46.059	45.796	46.252	0.76518					11	8	2	0	0	0	0.72877	1	16922	16922		10.074	0.6908	1	1106400	+		58475	23217	42659	42992	57035	57035					-0.007954031079179913
VGVFLRPRS	9	Unmodified	_VGVFLRPRS_					0	0	0		ENST00000537502.5_1_20:24988246-24988372:-|nuORF	ENST00000537502.5_1_20:24988246-24988372:-|nuORF	ENST00000537502.5_1_20:24988246-24988372:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	515.65380859375	2	515.811451	1029.60835	-0.69438	-0.00035817	0.043147	2.2256E-05	-0.65123	-0.00033591	515.8114984068951	46.933	0.25555	46.933	46.799	47.055	0					7	4	2	0	0	0	0.78348	1	16474	16474		7.9102	0	1	1379900			58476	13249	42660	42993	57036	57036					0.0947286167099719
VGVFLRPRS	9	Unmodified	_VGVFLRPRS_					0	0	0		ENST00000537502.5_1_20:24988246-24988372:-|nuORF	ENST00000537502.5_1_20:24988246-24988372:-|nuORF	ENST00000537502.5_1_20:24988246-24988372:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	515.811451	1029.60835	-0.71606	-0.00036935	0.48405	0.00024968	-0.23201	-0.00011967	515.8116083295465	45.996	0.25263	46.761	46.603	46.855	0.76519	-0.085866	0.0002524	NaN	7.9102	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1235400			58477	13249	42660	42993							0.0947286167099719
VGVGAWAL	8	Unmodified	_VGVGAWAL_					0	0	0			REV__ENST00000568223.6_1_16:767979-768486:+|nuORF	REV__ENST00000568223.6_1_16:767979-768486:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	387.1213073730469	2	386.721239	771.427924	0.60486	0.00023391	0.34661	0.00013404	0.95147	0.00036795	386.7212530609729	38.91	0.66068	38.91	38.577	39.238	0					21	12	2	0	0	0	0.972	1	13283	13283		2.8892	0	1	2712600	+		58478	26259	42661	42994	57037	57037					0.03306763014131775
VGVGAWAL	8	Unmodified	_VGVGAWAL_					0	0	0			REV__ENST00000568223.6_1_16:767979-768486:+|nuORF	REV__ENST00000568223.6_1_16:767979-768486:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	387.1213073730469	2	386.721239	771.427924	0.42527	0.00016446	0.59731	0.00023099	1.0226	0.00039545	386.72139822507586	72.046	1.2152	72.046	71.715	72.93	0					55	23	3	0	0	0	0.972	1	26377	26377		0.79363	0	1	18284000	+		58479	26259	42661	42994	57038	57038					0.03306763014131775
VGVGAWAL	8	Unmodified	_VGVGAWAL_					0	0	0			REV__ENST00000568223.6_1_16:767979-768486:+|nuORF	REV__ENST00000568223.6_1_16:767979-768486:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	386.721239	771.427924	-0.39659	-0.00015337	0.87927	0.00034003	0.48268	0.00018666	386.72151097882744	71.572	1.2654	72.306	71.656	72.921	0.73421	0.13016	9.2924E-05	NaN	0.79363	54	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19358000	+		58480	26259	42661	42994							0.03306763014131775
VGVGGGSPTPV	11	Unmodified	_VGVGGGSPTPV_					0	0	0		ENST00000328914.4_1_7:4804199-4804568:+|nuORF	ENST00000328914.4_1_7:4804199-4804568:+|nuORF	ENST00000328914.4_1_7:4804199-4804568:+|nuORF	MSMS	A375_MHC_IP_R2	2	463.6585998535156	2	463.750724	925.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.918	1	31.636	31.136	32.136	0.71857								0	0	0	0.16108	1	10900	10900		13.042	0	1				58481	10753	42662	42995	57039	57039					0.021171945177911766
VGVGKNRKFL	10	Unmodified	_VGVGKNRKFL_					0	0	0		ENST00000368073.7_1_1:160186187-160186355:-|nuORF	ENST00000368073.7_1_1:160186187-160186355:-|nuORF	ENST00000368073.7_1_1:160186187-160186355:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	373.6328125	3	373.232864	1116.67676	0.4667	0.00017419	-0.081098	-3.0269E-05	0.3856	0.00014392	373.23277608390475	37.259	0.56218	37.259	37.096	37.658	0					21	10	3	0	0	0	0.71455	1	12586	12586		5.7834	0	1	3822700			58482	11106	42663	42996	57040	57040					0.12309106250836521
VGVKLFKL	8	Unmodified	_VGVKLFKL_					0	0	0			REV__tr|U7SSP0|U7SSP0_FUSNUNudixhydrolasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01331PE=4SV=1	REV__tr|U7SSP0|U7SSP0_FUSNUNudixhydrolasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01331PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	903.6993408203125	1	903.602601	902.595324	-0.47985	-0.00043359	3.6276	0.0032779	3.1477	0.0028443	903.6056053530901	138.11	0.25771	138.11	137.9	138.15	0					6	4	2	0	0	0	0.77839	1	53113	53113		0.79363	0	1	681540	+		58483	28438	42664	42997	57041	57041					0.14013030558896844
VGVLITSAIRK	11	Unmodified	_VGVLITSAIRK_					0	0	0			REV__L1PA12_dup1459|chr14:24645129-24646061:+|2.3378894784149136|0.043402481506214|5.75|453.0|7|1|sense	REV__L1PA12_dup1459|chr14:24645129-24646061:+|2.3378894784149136|0.043402481506214|5.75|453.0|7|1|sense	MULTI-MSMS	A375_MHC_IP_R1	1	1157.14013671875	1	1156.74122	1155.73394	-0.33294	-0.00038512	-0.005083	-5.8798E-06	-0.33802	-0.000391	1156.740794360892	149.53	1.9333	149.53	148.07	150	0					156	61	4	0	0	0	0.73934	2	56968	56968;57144		0	0	1	786630	+		58484	26890	42665	42998	57042;57043	57042					0.16230528736514316
VGVLITSAIRK	11	Unmodified	_VGVLITSAIRK_					0	0	0			REV__L1PA12_dup1459|chr14:24645129-24646061:+|2.3378894784149136|0.043402481506214|5.75|453.0|7|1|sense	REV__L1PA12_dup1459|chr14:24645129-24646061:+|2.3378894784149136|0.043402481506214|5.75|453.0|7|1|sense	MULTI-SECPEP	A375_MHC_IP_R1	1	1157.14013671875	1	1156.74122	1155.73394	-0.33294	-0.00038512	-0.005083	-5.8798E-06	-0.33802	-0.000391	1156.740794360892	149.53	1.9333	149.53	148.07	150	0					156	61	4	0	0	0	1.0015	1	56968	56968		0	0	1	786630	+		58485	26890	42665	42998	57044	57044					0.16230528736514316
VGVLITSAIRK	11	Unmodified	_VGVLITSAIRK_					0	0	0			REV__L1PA12_dup1459|chr14:24645129-24646061:+|2.3378894784149136|0.043402481506214|5.75|453.0|7|1|sense	REV__L1PA12_dup1459|chr14:24645129-24646061:+|2.3378894784149136|0.043402481506214|5.75|453.0|7|1|sense	MULTI-MSMS	A375_MHC_IP_R2	2	1157.140625	1	1156.74122	1155.73394	0.34239	0.00039606	-0.45862	-0.0005305	-0.11623	-0.00013444	1156.740359355679	149.61	1.6899	149.62	148.32	150.01	0.01825					150	62	3	0	0	0	0.73934	1	57956	57956		0	0	1	701710	+		58486	26890	42665	42998	57045	57045					0.16230528736514316
VGVLITSAIRK	11	Unmodified	_VGVLITSAIRK_					0	0	0			REV__L1PA12_dup1459|chr14:24645129-24646061:+|2.3378894784149136|0.043402481506214|5.75|453.0|7|1|sense	REV__L1PA12_dup1459|chr14:24645129-24646061:+|2.3378894784149136|0.043402481506214|5.75|453.0|7|1|sense	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	1156.74122	1155.73394	0.34239	0.00039606	-0.45862	-0.0005305	-0.11623	-0.00013444	1156.740359355679	149.61	1.6899	149.62	148.32	150.01	0.01825	0.046063	-0.00019987	NaN	0	150	62	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	701710	+		58487	26890	42665	42998							0.16230528736514316
VGVLKQIHKA	10	Unmodified	_VGVLKQIHKA_					0	0	0			REV__ENST00000591563.5_1_17:73828844-73835996:-|nuORF	REV__ENST00000591563.5_1_17:73828844-73835996:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	364.95361328125	3	364.901114	1091.68151	0.19795	7.2234E-05	-0.25837	-9.4278E-05	-0.060413	-2.2045E-05	364.9010948762047	40.818	0.30109	40.818	40.712	41.013	0					9	5	2	0	0	0	0.93733	1	14048	14048		5.4027	2.3304	1	1060200	+		58488	16978	42666	42999	57046	57046					0.13933990393593376
VGVMWCYV	8	Unmodified	_VGVMWCYV_					0	0	0			REV__ENST00000473145.5_1_3:52445201-52445348:+|nuORF	REV__ENST00000473145.5_1_3:52445201-52445348:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	479.1219787597656	2	478.722067	955.429581	-0.46017	-0.00022029	0.2813	0.00013467	-0.17886	-8.5626E-05	478.7221212066422	73.707	1.7748	73.707	73.285	75.06	0					43	34	2	0	0	0	0.972	1	26881	26881		6.3541	6.3541	1	1390800	+		58489	25144	42667	43000	57047	57047					-0.04991687283779811
VGVPLGHSR	9	Unmodified	_VGVPLGHSR_					0	0	0			REV__ENSG00000101890|ENST00000218006|GUCY2F	REV__ENSG00000101890|ENST00000218006|GUCY2F	MULTI-MSMS	A375_MHC_IP_R1	1	461.6663818359375	2	461.266876	920.519199	-0.41393	-0.00019093	-1.5564	-0.0007179	-1.9703	-0.00090884	461.2660273411246	129.47	0.70906	129.47	129.25	129.95	0					22	13	3	0	0	0	0.70307	1	49796	49796		6.7232	0	1	7178600	+		58490	17189	42668	43001	57048	57048					0.0557602671146924
VGVRNSHRSP	10	Unmodified	_VGVRNSHRSP_					0	0	0			REV__ENST00000606662.1_1_5:115420473-115420716:-|nuORF	REV__ENST00000606662.1_1_5:115420473-115420716:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	370.5893859863281	3	370.203856	1107.58974	0.041315	1.5295E-05	1.2959	0.00047976	1.3372	0.00049505	370.2040751881386	23.778	0.50828	23.778	23.533	24.042	0					11	9	2	0	0	0	0.72078	1	6672	6672		1.4551	0	1	1258400	+		58491	26541	42669	43002	57049	57049					0.04024700029140149
VGVSPPLP	8	Unmodified	_VGVSPPLP_					0	0	0			REV__ENST00000396021.2_1_X:68003520-68004069:+|nuORF	REV__ENST00000396021.2_1_X:68003520-68004069:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	764.7592163085938	1	765.450517	764.44324	-0.72531	-0.00055519	-2.8692	-0.0021962	-3.5945	-0.0027514	765.4487714746058	140.44	0.30658	140.48	140.25	140.55	0.04216					6	5	2	0	0	0	0.972	1	54913	54913		0.79363	0	1	377410	+		58492	19326	42670	43003	57050	57050					0.051596298113167904
VGVVWVYLPD	10	Unmodified	_VGVVWVYLPD_					0	0	0		ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	MULTI-SECPEP	A375_MHC_IP_R2	2	383.2780456542969	3	382.877975	1145.6121	-0.40644	-0.00015562	0.15283	5.8515E-05	-0.25361	-9.71E-05	382.8779825756054	60.961	0.70802	61.706	61.464	62.172	0.74503					29	13	3	0	0	0	0.76414	1	23096	23096		12.873	0	1	5918700			58493	5402	42671	43004	57051	57051					0.04511486654178043
VGVYFVQYR	9	Unmodified	_VGVYFVQYR_					0	0	0			REV__nc|ENSG00000123096|Q14714-2|SSPN	REV__nc|ENSG00000123096|Q14714-2|SSPN	MULTI-MSMS	A375_MHC_IP_R1	1	565.7033081054688	2	565.803291	1129.59203	-0.65968	-0.00037325	0.74081	0.00041915	0.081131	4.5904E-05	565.8038174044439	23.813	0.35518	23.813	23.687	24.042	0					8	6	2	0	0	0	0.71902	1	6673	6673		8.5933	7.3999	1	4332600	+		58494	18230	42672	43005	57052	57052					0.032417357142321634
VGVYYVGL	8	Unmodified	_VGVYYVGL_					0	0	0			REV__ENSG00000177666|ENST00000336615|PNPLA2	REV__ENSG00000177666|ENST00000336615|PNPLA2	MSMS	A375_MHC_IP_R2	2	435.2821350097656	2	435.242004	868.469455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.299	1	89.031	88.531	89.531	0.7318								0	0	0	0.16876	1	33601	33601		6.3541	0	1		+		58495	21466	42673	43006	57053	57053					0.029958989827946425
VGWGLAIRKT	10	Unmodified	_VGWGLAIRKT_					0	0	0		NPAP1|p.A87V|1|0.2|ENSG00000185823|chr15:24676127-24676127|C/T|missense_variant;ENSG00000185823|ENST00000329468|NPAP1	NPAP1|p.A87V|1|0.2|ENSG00000185823|chr15:24676127-24676127|C/T|missense_variant	NPAP1|p.A87V|1|0.2|ENSG00000185823|chr15:24676127-24676127|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6558227539062	2	550.832383	1099.65021	-1.0875	-0.00059905	2.0582	0.0011337	0.9707	0.00053469	550.8343504154194	71.818	0.35468	72.552	72.264	72.618	0.73421					8	6	2	0	0	0	0.92051	1	27262	27262		12.532	3.1841	1	962520			58496	8696	42674	43007	57054	57054					0.10437417359480605
VGWLGAGG	8	Unmodified	_VGWLGAGG_					0	0	0		ENST00000420702.5_2_6:136571227-136571401:-|nuORF	ENST00000420702.5_2_6:136571227-136571401:-|nuORF	ENST00000420702.5_2_6:136571227-136571401:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	357.9523620605469	2	358.689939	715.365324	0.040469	1.4516E-05	0.30648	0.00010993	0.34695	0.00012445	358.68992849112243	32.057	0.46121	32.057	31.718	32.179	0					12	8	2	0	0	0	0.972	1	10304	10304		0.79363	0	1	1199500			58497	11728	42675	43008	57055	57055					-0.0037438305404293715
VGWLIQLFHK	10	Unmodified	_VGWLIQLFHK_					0	0	0		ENSG00000101425|ENST00000642449|BPI;nc|ENSG00000101425|P17213|BPI	ENSG00000101425|ENST00000642449|BPI	ENSG00000101425|ENST00000642449|BPI	MULTI-SECPEP	A375_MHC_IP_R2	2	414.95892333984375	3	414.244881	1239.71281	-0.25813	-0.00010693	-1.7056	-0.00070653	-1.9637	-0.00081346	414.24444401594815	18.905	0.20984	19.508	19.423	19.633	0.60308					6	5	2	0	0	0	0.94587	1	5732	5732		1.9064	1.2795	1	2921900			58498	2293	42676	43009	57056	57056					0.10254563427679386
VGWNWMTFQT	10	Unmodified	_VGWNWMTFQT_					0	0	0		ENST00000409016.8_1_2:99205452-99205602:+|nuORF	ENST00000409016.8_1_2:99205452-99205602:+|nuORF	ENST00000409016.8_1_2:99205452-99205602:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	423.9276123046875	3	423.862219	1268.56483	-0.37066	-0.00015711	0.49885	0.00021144	0.1282	5.4337E-05	423.8623550232482	34.575	1.7233	35.336	34.913	36.636	0.76097					48	33	2	0	0	0	0.72014	1	12872	12872		1.5923	1.5923	1	2832400			58499	11618	42677	43010	57057	57057					-0.05871115888476197
VGWPCGALGPG	11	Unmodified	_VGWPCGALGPG_					0	0	0		ENSG00000123815|ENST00000324464|COQ8B;nc|ENSG00000123815|Q96D53-2|COQ8B;ENST00000601451.5_1_19:41211221-41220537:-|nuORF	ENSG00000123815|ENST00000324464|COQ8B	ENSG00000123815|ENST00000324464|COQ8B	MULTI-MSMS	A375_MHC_IP_R2	2	507.21575927734375	2	507.247295	1012.48004	-1.0513	-0.00053329	0.072316	3.6682E-05	-0.97902	-0.0004966	507.247302223551	51.899	0.91322	52.651	52.372	53.285	0.75225					39	17	4	0	0	0	0.73228	1	19443	19443		6.7232	0.36906	1	37716000			58500	3859	42678	43011	57058	57058					-0.025704416343955927
VGWRLIAL	8	Unmodified	_VGWRLIAL_					0	0	0		nc|ENSG00000116688|O95140-2|MFN2;ENSG00000116688|ENST00000235329|MFN2	nc|ENSG00000116688|O95140-2|MFN2	nc|ENSG00000116688|O95140-2|MFN2	MULTI-SECPEP	A375_MHC_IP_R1	1	464.6919250488281	2	464.292362	926.570172	-0.075308	-3.4965E-05	0.15866	7.3667E-05	0.083356	3.8702E-05	464.2923358283554	110.47	0.561	110.47	110.19	110.75	0					23	10	3	0	0	0	0.77651	1	40491	40491		42.095	23.96	1	4402500			58501	3418	42679	43012	57059	57059					0.10394975756298663
VGWRLIAL	8	Unmodified	_VGWRLIAL_					0	0	0		nc|ENSG00000116688|O95140-2|MFN2;ENSG00000116688|ENST00000235329|MFN2	nc|ENSG00000116688|O95140-2|MFN2	nc|ENSG00000116688|O95140-2|MFN2	MULTI-MSMS	A375_MHC_IP_R2	2	464.69219970703125	2	464.292362	926.570172	-0.50528	-0.0002346	0.067532	3.1355E-05	-0.43775	-0.00020324	464.292338284569	109.4	0.6064	110.15	109.83	110.43	0.74684					26	11	3	0	0	0	0.45507	1	41274	41274		50.855	26.181	1	4397500			58502	3418	42679	43012	57060	57060					0.10394975756298663
VGWTLHIS	8	Unmodified	_VGWTLHIS_					0	0	0		ENST00000398922.6_1_11:62433120-62433833:+|nuORF;ENST00000529868.1_1_11:62433120-62433501:+|nuORF	ENST00000398922.6_1_11:62433120-62433833:+|nuORF	ENST00000398922.6_1_11:62433120-62433833:+|nuORF	MSMS	A375_MHC_IP_R2	2	456.669189453125	2	456.750527	911.486502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.507	1	20.117	19.617	20.617	0.60981								0	0	0	0.16876	1	6000	6000		19.439	0	1				58503	11531	42680	43013	57061	57061					0.027218195886121066
VGWVAGGL	8	Unmodified	_VGWVAGGL_					0	0	0		nc|ENSG00000066405|P56856-2|CLDN18;ENSG00000066405|ENST00000183605|CLDN18	nc|ENSG00000066405|P56856-2|CLDN18	nc|ENSG00000066405|P56856-2|CLDN18	MULTI-SECPEP	A375_MHC_IP_R2	2	380.11376953125	2	379.713414	757.412274	0.15874	6.0274E-05	0.39047	0.00014827	0.5492	0.00020854	379.71354023798693	90.502	0.50851	91.236	90.904	91.413	0.7345					15	9	2	0	0	0	0.972	1	34443	34443		2.8892	0	1	1681400			58504	1410	42681	43014	57062	57062					0.023864764970994656
VGWVAGGL	8	Unmodified	_VGWVAGGL_					0	0	0		nc|ENSG00000066405|P56856-2|CLDN18;ENSG00000066405|ENST00000183605|CLDN18	nc|ENSG00000066405|P56856-2|CLDN18	nc|ENSG00000066405|P56856-2|CLDN18	MULTI-SECPEP	A375_MHC_IP_R2	2	380.11383056640625	2	379.713414	757.412274	0.1488	5.6503E-05	0.74346	0.0002823	0.89226	0.0003388	379.71360445780334	91.081	0.65778	91.816	91.514	92.172	0.73451					25	12	3	0	0	0	0.972	1	34668	34668		0.79363	0	1	6481900			58505	1410	42681	43014	57063	57063					0.023864764970994656
VGWVAGGL	8	Unmodified	_VGWVAGGL_					0	0	0		nc|ENSG00000066405|P56856-2|CLDN18;ENSG00000066405|ENST00000183605|CLDN18	nc|ENSG00000066405|P56856-2|CLDN18	nc|ENSG00000066405|P56856-2|CLDN18	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	379.713414	757.412274	0.38066	0.00014454	0.97396	0.00036983	1.3546	0.00051437	379.713688283733	91.832	0.50621	91.832	91.604	92.11	0	0.0081575	8.1831E-05	NaN	0.79363	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6481900			58506	1410	42681	43014							0.023864764970994656
VGWVGAGG	8	Unmodified	_VGWVGAGG_					0	0	0		ENST00000383814.7_2_3:9958003-9958054:+|nuORF	ENST00000383814.7_2_3:9958003-9958054:+|nuORF	ENST00000383814.7_2_3:9958003-9958054:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	351.6095275878906	2	351.682114	701.349674	-0.29031	-0.0001021	0.33024	0.00011614	0.039931	1.4043E-05	351.68226543291104	46.81	0.30447	46.81	46.699	47.003	0					10	5	2	0	0	0	0.77839	1	16440	16440		0.79363	0	1	1012900			58507	11393	42682	43015	57064	57064					-0.012946695710866152
VGWVGAGG	8	Unmodified	_VGWVGAGG_					0	0	0		ENST00000383814.7_2_3:9958003-9958054:+|nuORF	ENST00000383814.7_2_3:9958003-9958054:+|nuORF	ENST00000383814.7_2_3:9958003-9958054:+|nuORF	MSMS	A375_MHC_IP_R2	2	351.60986328125	2	351.682114	701.349674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.953	1	46.718	46.218	47.218	0.76519								0	0	0	0.16876	1	17195	17195		0.79363	0	1				58508	11393	42682	43015	57065	57065					-0.012946695710866152
VGYAALAL	8	Unmodified	_VGYAALAL_					0	0	0		ENSG00000175485|ENST00000311352|OR52W1	ENSG00000175485|ENST00000311352|OR52W1	ENSG00000175485|ENST00000311352|OR52W1	MSMS	A375_MHC_IP_R2	2	389.2937927246094	2	389.228897	776.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.654	1	24.285	23.785	24.785	0.63014								0	0	0	0.16876	1	7650	7650		11.114	0	1				58509	7964	42683	43016	57066	57066					0.04607629811323477
VGYARKGRR	9	Unmodified	_VGYARKGRR_					0	0	0			REV__ENST00000469600.1_1_3:38164540-38167382:-|nuORF	REV__ENST00000469600.1_1_3:38164540-38167382:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	532.2158813476562	2	531.817599	1061.62064	-0.47936	-0.00025493	-1.6891	-0.00089827	-2.1684	-0.0011532	531.8164150318127	125.92	0.85528	125.92	125.55	126.41	0					38	16	4	0	0	0	0.80005	1	47968	47968		4.756	4.756	1	20857000	+		58510	16447	42684	43017	57067	57067					0.09229898134049108
VGYEHYAEAP	10	Unmodified	_VGYEHYAEAP_					0	0	0		ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	MULTI-MSMS	A375_MHC_IP_R2	2	568.201171875	2	568.256371	1134.49819	-0.2487	-0.00014133	0.19925	0.00011322	-0.049451	-2.8101E-05	568.2555774546495	68.765	1.573	69.5	69.121	70.694	0.73511					60	30	4	0	0	0	0.60556	1	26017	26017		20.454	2.3073	1	17418000			58511	8114	42685	43018	57068	57068					-0.06368028178712848
VGYGDQLGNSW	11	Unmodified	_VGYGDQLGNSW_					0	0	0			REV__JPH1|p.Q529Sfs*27|1|0.19|ENSG00000104369|chr8:74244849-74244849|G/-|frameshift_variant	REV__JPH1|p.Q529Sfs*27|1|0.19|ENSG00000104369|chr8:74244849-74244849|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	598.6723022460938	2	598.272552	1194.53055	-0.22539	-0.00013485	-0.15858	-9.4876E-05	-0.38398	-0.00022972	598.2724948729225	72.29	0.60712	72.29	72.018	72.625	0					26	11	3	0	0	0	0.9889	1	26288	26288		12.241	5.5175	1	4920200	+		58512	26815	42686	43019	57069	57069					-0.05893240775708364
VGYGDQLGNSW	11	Unmodified	_VGYGDQLGNSW_					0	0	0			REV__JPH1|p.Q529Sfs*27|1|0.19|ENSG00000104369|chr8:74244849-74244849|G/-|frameshift_variant	REV__JPH1|p.Q529Sfs*27|1|0.19|ENSG00000104369|chr8:74244849-74244849|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	598.6721801757812	2	598.272552	1194.53055	-0.84455	-0.00050527	0.098425	5.8885E-05	-0.74612	-0.00044638	598.2725140384692	71.738	0.5564	72.472	72.213	72.77	0.73421					24	10	3	0	0	0	0.7039	1	27227	27227		15.248	5.1746	1	4919700	+		58513	26815	42686	43019	57070	57070					-0.05893240775708364
VGYGDQLGNSW	11	Unmodified	_VGYGDQLGNSW_					0	0	0			REV__JPH1|p.Q529Sfs*27|1|0.19|ENSG00000104369|chr8:74244849-74244849|G/-|frameshift_variant	REV__JPH1|p.Q529Sfs*27|1|0.19|ENSG00000104369|chr8:74244849-74244849|G/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	598.272552	1194.53055	-0.84455	-0.00050527	0.098425	5.8885E-05	-0.74612	-0.00044638	598.2725140384692	71.738	0.5564	72.472	72.213	72.77	0.73421	0.090946	0.0001019	NaN	15.248	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4919700	+		58514	26815	42686	43019							-0.05893240775708364
VGYGRCFPD	9	Unmodified	_VGYGRCFPD_					0	0	0			REV__CYP2B6|p.F108C|1|0.23|ENSG00000197408|chr19:41004152-41004152|T/G|missense_variant	REV__CYP2B6|p.F108C|1|0.23|ENSG00000197408|chr19:41004152-41004152|T/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	507.176513671875	2	507.229102	1012.44365	-0.31074	-0.00015762	0.25586	0.00012978	-0.054883	-2.7838E-05	507.2291105340381	88.327	0.40701	88.327	88.154	88.561	0					12	7	2	0	0	0	0.6898	1	32407	32407		7.9102	1.187	1	1624700	+		58515	15949	42687	43020	57071	57071					-0.06207318531130568
VGYHVIVSCS	10	Unmodified	_VGYHVIVSCS_					0	0	0		FAM72A|p.P88S|1|0.47|ENSG00000196550|chr1:206195845-206195845|G/A|missense_variant	FAM72A|p.P88S|1|0.47|ENSG00000196550|chr1:206195845-206195845|G/A|missense_variant	FAM72A|p.P88S|1|0.47|ENSG00000196550|chr1:206195845-206195845|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	355.4599304199219	3	355.179548	1062.51682	0.1002	3.5588E-05	-0.32017	-0.00011372	-0.21997	-7.813E-05	355.1794120619637	35.158	0.86674	35.158	34.861	35.727	0					22	16	2	0	0	0	0.71866	1	11651	11651		1.9064	0.42447	1	1861800			58516	13975	42688	43021	57072	57072					-0.011941898085069624
VGYICGESPAW	11	Unmodified	_VGYICGESPAW_					0	0	0		ENSG00000185897|ENST00000327809|FFAR3	ENSG00000185897|ENST00000327809|FFAR3	ENSG00000185897|ENST00000327809|FFAR3	MULTI-SECPEP	A375_MHC_IP_R1	1	395.28778076171875	3	394.514708	1180.5223	-0.089349	-3.5249E-05	1.1385	0.00044917	1.0492	0.00041392	394.51616344072494	27.277	0.4561	27.277	27.128	27.584	0					11	8	2	0	0	0	0.99526	1	8214	8214		1.4551	0	1	1495300			58517	8703	42689	43022	57073	57073					-0.060745110166863014
VGYLRDAVR	9	Unmodified	_VGYLRDAVR_					0	0	0			REV__nc|ENSG00000114520|O95219-2|SNX4	REV__nc|ENSG00000114520|O95219-2|SNX4	MSMS	A375_MHC_IP_R1	1	524.9157104492188	2	524.79854	1047.58253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.103	1	24.103	23.603	24.603	0								0	0	0	0.15486	1	6757	6757		6.2058	0.47393	1		+		58518	17828	42690	43023	57074	57074					0.060639674286903755
VGYLVRLV	8	Unmodified	_VGYLVRLV_					0	0	0		ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	MULTI-SECPEP	A375_MHC_IP_R1	1	460.1916809082031	2	459.792195	917.569838	-0.32536	-0.0001496	-0.094819	-4.3597E-05	-0.42018	-0.0001932	459.79210599585775	87.211	0.71175	87.211	86.881	87.593	0					26	13	3	0	0	0	0.23624	1	31993	31993		70.716	21.047	1	3698700			58519	8072	42691	43024	57075	57075					0.10775556036458056
VGYLVRLV	8	Unmodified	_VGYLVRLV_					0	0	0		ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	MULTI-SECPEP	A375_MHC_IP_R2	2	460.1921081542969	2	459.792195	917.569838	-0.24225	-0.00011139	-0.23072	-0.00010608	-0.47298	-0.00021747	459.79205200904306	86.204	0.61253	86.937	86.642	87.255	0.733					24	11	3	0	0	0	0.34394	1	32763	32763		60.39	24.345	1	3532600			58520	8072	42691	43024	57076	57076					0.10775556036458056
VGYNSDSFY	9	Unmodified	_VGYNSDSFY_					0	0	0			REV__tr|U7SVA4|U7SVA4_FUSNUTypeIVsecretionproteinRhsOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01192PE=4SV=1	REV__tr|U7SVA4|U7SVA4_FUSNUTypeIVsecretionproteinRhsOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01192PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	526.6769409179688	2	526.221997	1050.42944	-0.66802	-0.00035153	-0.49506	-0.00026051	-1.1631	-0.00061204	526.2218583809682	86.571	1.2666	86.571	86.022	87.289	0					49	24	3	0	0	0	0.4867	1	31619	31619		20.454	1.1966	1	9490300	+		58521	28588	42692	43025	57077	57077					-0.09375692478397468
VGYPGRLHLW	10	Unmodified	_VGYPGRLHLW_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-SECPEP	A375_MHC_IP_R2	2	400.2891845703125	3	399.889097	1196.64546	-0.074934	-2.9965E-05	0.50441	0.00020171	0.42948	0.00017174	399.88924756467804	72.983	0.6608	73.718	73.278	73.938	0.73541					24	12	3	0	0	0	0.65982	1	27695	27695		17.443	0	1	3114000			58522	5898	42693	43026	57078	57078					0.055005332167411325
VGYRMVMAL	9	Unmodified	_VGYRMVMAL_					0	0	0			REV__ENSG00000135919|ENST00000409304|SERPINE2	REV__ENSG00000135919|ENST00000409304|SERPINE2	MULTI-SECPEP	A375_MHC_IP_R2	2	519.9596557617188	2	520.274998	1038.53544	-0.5904	-0.00030717	-1.7989	-0.0009359	-2.3893	-0.0012431	520.273995685004	46.037	0.65804	46.802	46.552	47.21	0.76519					17	12	2	0	0	0	0.73662	1	17152	17152		14.582	8.8498	1	1800000	+		58523	15735	42694	43027	57079	57079					0.01771648561702932
VGYRMVMAL	9	Unmodified	_VGYRMVMAL_					0	0	0			REV__ENSG00000135919|ENST00000409304|SERPINE2	REV__ENSG00000135919|ENST00000409304|SERPINE2	MULTI-MATCH	A375_MHC_IP_R1	1		2	520.274998	1038.53544	-0.66941	-0.00034828	-1.1841	-0.00061605	-1.8535	-0.00096432	520.2742776668124	46.867	0.61375	46.867	46.545	47.159	0	0.032511	9.134E-05	NaN	14.582	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2152900	+		58524	15735	42694	43027							0.01771648561702932
VGYRVATF	8	Unmodified	_VGYRVATF_					0	0	0		ENSG00000179085|ENST00000368400|DPM3;nc|ENSG00000179085|Q9P2X0-2|DPM3	ENSG00000179085|ENST00000368400|DPM3	ENSG00000179085|ENST00000368400|DPM3	MULTI-SECPEP	A375_MHC_IP_R1	1	456.6349792480469	2	456.750527	911.486502	-0.20078	-9.1706E-05	0.28688	0.00013103	0.086104	3.9328E-05	456.75050299671483	53.58	1.0142	53.58	53.199	54.213	0					35	19	3	0	0	0	0.51146	1	19070	19070		61.357	10.502	1	17100000			58525	8203	42695	43028	57080	57080					0.027218195886234753
VGYRVATF	8	Unmodified	_VGYRVATF_					0	0	0		ENSG00000179085|ENST00000368400|DPM3;nc|ENSG00000179085|Q9P2X0-2|DPM3	ENSG00000179085|ENST00000368400|DPM3	ENSG00000179085|ENST00000368400|DPM3	MULTI-SECPEP	A375_MHC_IP_R2	2	457.1503601074219	2	456.750527	911.486502	-0.76449	-0.00034918	0.4486	0.0002049	-0.31589	-0.00014428	456.75055371513946	52.762	0.75999	53.513	53.133	53.893	0.75105					33	14	3	0	0	0	0.23546	1	19877	19877		85.272	34.417	1	13178000			58526	8203	42695	43028	57081	57081					0.027218195886234753
VGYTPLSE	8	Unmodified	_VGYTPLSE_					0	0	0			REV__ENST00000342409.3_1_10:13735712-14050160:-|nuORF	REV__ENST00000342409.3_1_10:13735712-14050160:-|nuORF	MSMS	A375_MHC_IP_R1	1	433.28515625	2	433.218726	864.422899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.01	1	112.01	111.51	112.51	0								0	0	0	0.16876	1	41056	41056		2.5775	0	1		+		58527	19755	42696	43029	57082	57082					-0.014735856391325797
VGYVVPNK	8	Unmodified	_VGYVVPNK_					0	0	0			REV__ENSG00000075213|ENST00000265362|SEMA3A	REV__ENSG00000075213|ENST00000265362|SEMA3A	MSMS	A375_MHC_IP_R2	2	438.2933349609375	2	438.252903	874.491253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.635	1	20.245	19.745	20.745	0.61029								0	0	0	0.16876	1	6048	6048		2.5775	0	1		+		58528	16651	42697	43030	57083	57083					0.048987037313850124
VHARRRYRQFY	11	Unmodified	_VHARRRYRQFY_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MSMS	A375_MHC_IP_R1	1	776.4232177734375	2	776.423825	1550.8331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.764	1	90.764	90.264	91.264	0								0	0	0	0.16334	1	33357	33357		1.3295	0.9789	1		+		58529	18320	42698	43031	57084	57084					0.07971364474019538
VHCAAPRA	8	Unmodified	_VHCAAPRA_					0	0	0		nc|ENSG00000277758|X6R8R1|SYT15B;nc|ENSG00000204176|Q9BQS2-3|SYT15	nc|ENSG00000277758|X6R8R1|SYT15B	nc|ENSG00000277758|X6R8R1|SYT15B	MULTI-MSMS	A375_MHC_IP_R1	1	413.637939453125	2	412.713422	823.412291	0.2277	9.3975E-05	-0.7512	-0.00031003	-0.5235	-0.00021605	412.7130701680946	100.26	1.2158	100.26	99.925	101.14	0					51	23	4	0	0	0	0.77797	1	36905	36905		2.3027	0.24298	1	17909000			58530	14858	42699	43032	57085	57085					-0.006478467745751004
VHCCEFTGLS	10	Unmodified	_VHCCEFTGLS_					0	0	0			REV__ENST00000276202.8_1_X:117677519-117679296:+|nuORF	REV__ENST00000276202.8_1_X:117677519-117679296:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	548.632568359375	2	548.233527	1094.4525	-0.77669	-0.00042581	0.18877	0.00010349	-0.58792	-0.00032232	548.2336931333979	73.126	0.61191	73.861	73.48	74.091	0.73541					16	11	2	0	0	0	0.70329	1	27792	27792		10.824	0	1	1384500	+		58531	23303	42700	43033	57086	57086					-0.09094712956971307
VHDEAAWRDW	10	Unmodified	_VHDEAAWRDW_					0	0	0			REV__ENST00000478462.5_1_X:11777869-11779061:+|nuORF	REV__ENST00000478462.5_1_X:11777869-11779061:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	643.1909790039062	2	642.791444	1283.56833	-0.51285	-0.00032966	-0.1154	-7.4177E-05	-0.62825	-0.00040383	642.7913897563758	61.661	0.61274	61.661	61.382	61.994	0					26	11	3	0	0	0	0.70329	1	22226	22226		10.824	0.67336	1	17622000	+		58532	16119	42701	43034	57087	57087					-0.0621072979024575
VHDLSQPFY	9	Unmodified	_VHDLSQPFY_					0	0	0		ENSG00000182752|ENST00000328252|PAPPA	ENSG00000182752|ENST00000328252|PAPPA	ENSG00000182752|ENST00000328252|PAPPA	MULTI-SECPEP	A375_MHC_IP_R1	1	369.9451904296875	3	369.181946	1104.52401	0.22354	8.2526E-05	0.48744	0.00017995	0.71097	0.00026248	369.18197875813956	47.204	0.31092	47.204	47.055	47.366	0					9	5	2	0	0	0	0.74412	1	16625	16625		10.151	6.5635	1	1432400			58533	8433	42702	43035	57088	57088					-0.02407133936435457
VHDLSQPFY	9	Unmodified	_VHDLSQPFY_					0	0	0		ENSG00000182752|ENST00000328252|PAPPA	ENSG00000182752|ENST00000328252|PAPPA	ENSG00000182752|ENST00000328252|PAPPA	MULTI-MATCH	A375_MHC_IP_R2	2		3	369.181946	1104.52401	0.37214	0.00013739	-0.66185	-0.00024434	-0.28971	-0.00010696	369.1819063083153	46.361	0.45773	47.126	46.855	47.313	0.76519	-0.03879	-0.00068374	NaN	10.151	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1081800			58534	8433	42702	43035							-0.02407133936435457
VHGMKDLDR	9	Unmodified	_VHGMKDLDR_					0	0	0		ENST00000467811.5_1_20:50704880-50715019:-|nuORF;nc|ENSG00000020256|Q9NTW7-3|ZFP64;nc|ENSG00000020256|Q9NTW7-2|ZFP64;nc|ENSG00000020256|Q9NTW7|ZFP64;ENST00000477786.5_1_20:50705508-50792496:-|nuORF	ENST00000467811.5_1_20:50704880-50715019:-|nuORF	ENST00000467811.5_1_20:50704880-50715019:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	358.27313232421875	3	357.518564	1069.53386	-0.24076	-8.6075E-05	0.61063	0.00021831	0.36988	0.00013224	357.5185804771847	23.693	0.25382	23.693	23.584	23.838	0					6	4	2	0	0	0	0.63327	1	6549	6549		17.443	0.32975	1	1827800			58535	12287	42703	43036	57089	57089					0.0018773079727907316
VHGPQPTF	8	Unmodified	_VHGPQPTF_					0	0	0			REV__ENST00000464569.1_1_1:31215389-31218880:-|nuORF	REV__ENST00000464569.1_1_1:31215389-31218880:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	441.6578369140625	2	441.727052	881.439552	0.208	9.188E-05	-0.65046	-0.00028732	-0.44246	-0.00019544	441.72685276101254	48.164	0.60677	48.164	47.819	48.426	0					14	11	2	0	0	0	0.75805	1	16926	16926		18.135	0	1	1049200	+		58536	25014	42704	43037	57090	57090					-0.005910399625349783
VHHFYREQCYY	11	Unmodified	_VHHFYREQCYY_					0	0	0			REV__TTC21B|p.Y1260Ifs*9|1|0.17|ENSG00000123607|chr2:165880706-165880706|A/-|frameshift_variant	REV__TTC21B|p.Y1260Ifs*9|1|0.17|ENSG00000123607|chr2:165880706-165880706|A/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	515.6461181640625	3	515.562832	1543.66667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.287	1	89.019	88.519	89.519	0.7318								0	0	0	0.16334	1	33596	33596		1.3296	0.82369	1		+		58537	18252	42705	43038	57091	57091					-0.08341869536684499
VHHILQRIK	9	Unmodified	_VHHILQRIK_					0	0	0		nc|ENSG00000151572|Q32M45-2|ANO4;ENSG00000151572|ENST00000392977|ANO4;chr12:100740105-100901646|285|19.07|0.2|6.56|+|ENST00000644049|ANO4,ANO4;chr12:100733857-100739854|304|19.0|0.22|6.42|+|ENST00000644049|ANO4,ANO4;chr12:100717547-100733774|256|11.42|0.12|6.52|+|ENST00000644049|ANO4,ANO4;ANO4|p.E274D|1|0.42|ENSG00000151572|chr12:101020121-101020121|A/C|missense_variant	nc|ENSG00000151572|Q32M45-2|ANO4	nc|ENSG00000151572|Q32M45-2|ANO4	MULTI-MSMS	A375_MHC_IP_R1	1	382.2839050292969	3	381.908492	1142.70365	0.15729	6.0069E-05	0.25243	9.6406E-05	0.40972	0.00015647	381.9086192887745	38.449	0.51128	38.449	38.218	38.73	0					13	9	2	0	0	0	0.7235	1	13144	13144		4.897	0.36815	1	3347800			58538	407	42706	43039	57092	57092					0.13800214862021676
VHHLLNNY	8	Unmodified	_VHHLLNNY_					0	0	0			REV__PRPF8|p.P324L|1|0.21|ENSG00000174231|chr17:1680950-1680950|G/A|missense_variant	REV__PRPF8|p.P324L|1|0.21|ENSG00000174231|chr17:1680950-1680950|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	505.6929931640625	2	505.264333	1008.51411	-0.52454	-0.00026503	0.13573	6.8579E-05	-0.38881	-0.00019645	505.26374782271773	32.269	0.56052	32.269	32.024	32.585	0					22	10	3	0	0	0	0.7479	1	10487	10487		20.871	3.7583	1	3196700	+		58539	27840	42707	43040	57093	57093					0.01019722848843685
VHHPILPP	8	Unmodified	_VHHPILPP_					0	0	0		ENSG00000205927|ENST00000382357|OLIG2	ENSG00000205927|ENST00000382357|OLIG2	ENSG00000205927|ENST00000382357|OLIG2	MSMS	A375_MHC_IP_R2	2	455.6591796875	2	455.268887	908.523222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.21	1	54.961	54.461	55.461	0.75075								0	0	0	0.16876	1	20461	20461		17.087	3.5787	1				58540	9534	42708	43041	57094	57094					0.06530116205192371
VHKGAGRG	8	Unmodified	_VHKGAGRG_					0	0	0			REV__USP31|p.L1244Rfs*8|1|0.34|ENSG00000103404|chr16:23068373-23068374|AA/-|frameshift_variant	REV__USP31|p.L1244Rfs*8|1|0.34|ENSG00000103404|chr16:23068373-23068374|AA/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	391.6253662109375	2	391.225011	780.435469	0.13467	5.2686E-05	0.28346	0.0001109	0.41813	0.00016358	391.22501289305285	94.688	4.2641	94.688	91.35	95.614	0					120	83	2	0	0	0	0.77861	1	34447	34447		0	0	1	4325300	+		58541	17275	42709	43042	57095	57095					0.036469153344341976
VHLDEFQKI	9	Unmodified	_VHLDEFQKI_					0	0	0		ENST00000577772.5_1_18:66504000-66564823:+|nuORF;nc|ENSG00000150636|Q68D86-2|CCDC102B;ENSG00000150636|ENST00000360242|CCDC102B;CCDC102B|p.L271I|1|0.3|ENSG00000150636|chr18:68838910-68838910|T/A|missense_variant	ENST00000577772.5_1_18:66504000-66564823:+|nuORF	ENST00000577772.5_1_18:66504000-66564823:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	376.5931396484375	3	376.873113	1127.59751	0.21604	8.142E-05	1.0758	0.00040544	1.2918	0.00048686	376.8735137417625	39.531	0.25196	39.531	39.391	39.643	0					6	4	2	0	0	0	0.67221	1	13542	13542		5.2969	0	1	1310700			58542	5855	42710	43043	57096	57096					0.038814145060541705
VHLFVMFQV	9	Unmodified	_VHLFVMFQV_					0	0	0		ADCY9|p.S302F|1|0.7|ENSG00000162104|chr16:4114538-4114538|G/A|missense_variant	ADCY9|p.S302F|1|0.7|ENSG00000162104|chr16:4114538-4114538|G/A|missense_variant	ADCY9|p.S302F|1|0.7|ENSG00000162104|chr16:4114538-4114538|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	560.1809692382812	2	560.304613	1118.59467	-0.53432	-0.00029938	1.9253	0.0010788	1.391	0.00077939	560.3055743252332	87.062	0.55568	87.795	87.612	88.167	0.73301					13	10	2	0	0	0	0.75466	1	33180	33180		7.9102	0	1	728860			58543	61	42711	43044	57097	57097					0.040118678475437264
VHLHDTGFLNF	11	Unmodified	_VHLHDTGFLNF_					0	0	0			REV__IGSF10|p.S1726F|1|0.11|ENSG00000152580|chr3:151443770-151443770|G/A|missense_variant	REV__IGSF10|p.S1726F|1|0.11|ENSG00000152580|chr3:151443770-151443770|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	433.9383239746094	3	433.887533	1298.64077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.685	1	84.685	84.185	85.185	0								0	0	0	0.14837	1	31025	31025		12.856	3.0917	1		+		58544	26783	42712	43045	57098	57098					0.003396042833401225
VHLHDTGFLNF	11	Unmodified	_VHLHDTGFLNF_					0	0	0			REV__IGSF10|p.S1726F|1|0.11|ENSG00000152580|chr3:151443770-151443770|G/A|missense_variant	REV__IGSF10|p.S1726F|1|0.11|ENSG00000152580|chr3:151443770-151443770|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	433.9386901855469	3	433.887533	1298.64077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.061	1	84.8	84.3	85.3	0.73962								0	0	0	0.14837	1	31952	31952		12.856	6.2325	1		+		58545	26783	42712	43045	57099	57099					0.003396042833401225
VHLIHIRLRDR	11	Unmodified	_VHLIHIRLRDR_					0	0	0			REV__ENSG00000147596|ENST00000276594|PRDM14	REV__ENSG00000147596|ENST00000276594|PRDM14	MSMS	A375_MHC_IP_R2	2	476.5982666015625	3	476.628388	1426.86333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.445	1	86.181	85.681	86.681	0.73601								0	0	0	0.16279	1	32484	32484		3.5927	0.74939	1		+		58546	19597	42713	43046	57100	57100					0.16697723139168374
VHLIKSERN	9	Unmodified	_VHLIKSERN_					0	0	0			REV__ENST00000242067.10_1_7:33423358-33423430:+|nuORF	REV__ENST00000242067.10_1_7:33423358-33423430:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	548.7474365234375	2	548.317097	1094.61964	-0.8934	-0.00048987	-0.79441	-0.00043559	-1.6878	-0.00092546	548.3165230037097	149.68	0.88222	149.68	149.11	149.99	0					48	39	2	0	0	0	0.75764	1	57006	57006		1.8442	0.36234	1	87651	+		58547	23098	42714	43047	57101	57101					0.07611638974481139
VHLIKSERN	9	Unmodified	_VHLIKSERN_					0	0	0			REV__ENST00000242067.10_1_7:33423358-33423430:+|nuORF	REV__ENST00000242067.10_1_7:33423358-33423430:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	548.317097	1094.61964	-0.8934	-0.00048987	-0.79441	-0.00043559	-1.6878	-0.00092546	548.3165230037097	149.68	0.88222	149.68	149.11	149.99	0	-0.029692	0.00013618	NaN	1.8442	48	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87651	+		58548	23098	42714	43047							0.07611638974481139
VHLIKSERN	9	Unmodified	_VHLIKSERN_					0	0	0			REV__ENST00000242067.10_1_7:33423358-33423430:+|nuORF	REV__ENST00000242067.10_1_7:33423358-33423430:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	548.317097	1094.61964	-0.59516	-0.00032634	-1.0201	-0.00055931	-1.6152	-0.00088565	548.3164648221654	149.72	0.85162	149.74	149.16	150.01	0.01825	0.029692	-0.00011127	NaN	1.8442	59	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84243	+		58549	23098	42714	43047							0.07611638974481139
VHLKEGEMY	9	Unmodified	_VHLKEGEMY_					0	0	0		ENSG00000155903|ENST00000286364|RASA2;nc|ENSG00000155903|Q15283|RASA2	ENSG00000155903|ENST00000286364|RASA2	ENSG00000155903|ENST00000286364|RASA2	MULTI-SECPEP	A375_MHC_IP_R2	2	369.9485778808594	3	369.18307	1104.52738	0.21319	7.8706E-05	2.7708	0.0010229	2.9839	0.0011016	369.18286966401774	41.676	0.5098	42.45	42.149	42.659	0.77451					26	9	4	0	0	0	0.73363	1	15544	15544		10.8	5.5026	1	3788300			58550	6163	42715	43048	57102	57102					-0.020702071540654288
VHLKEGEMY	9	Unmodified	_VHLKEGEMY_					0	0	0		ENSG00000155903|ENST00000286364|RASA2;nc|ENSG00000155903|Q15283|RASA2	ENSG00000155903|ENST00000286364|RASA2	ENSG00000155903|ENST00000286364|RASA2	MULTI-MATCH	A375_MHC_IP_R1	1		3	369.18307	1104.52738	0.44246	0.00016335	-0.61064	-0.00022544	-0.16817	-6.2087E-05	369.1830200875957	42.544	0.35332	42.544	42.386	42.739	0	0.046853	-0.0007114	NaN	10.8	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1820100			58551	6163	42715	43048							-0.020702071540654288
VHLKRLLIVVV	11	Unmodified	_VHLKRLLIVVV_					0	0	0		ENSG00000168484|ENST00000679463|SFTPC;nc|ENSG00000168484|P11686|SFTPC	ENSG00000168484|ENST00000679463|SFTPC	ENSG00000168484|ENST00000679463|SFTPC	MSMS	A375_MHC_IP_R2	2	644.9973754882812	2	644.945008	1287.87546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.667	1	62.412	61.912	62.912	0.74503								0	0	0	0.1636	1	23373	23373		0	0	1				58552	7308	42716	43049	57103	57103					0.24303946829672896
VHLRPVRQL	9	Unmodified	_VHLRPVRQL_					0	0	0		ENST00000307161.5_1_4:187455227-187455620:-|nuORF	ENST00000307161.5_1_4:187455227-187455620:-|nuORF	ENST00000307161.5_1_4:187455227-187455620:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	373.63653564453125	3	373.236608	1116.688	0.074355	2.7752E-05	0.056839	2.1215E-05	0.13119	4.8967E-05	373.2365850869285	37.478	0.71558	38.249	38.02	38.735	0.7709					36	13	4	0	0	0	0.80332	1	13716	13716		4.897	0	1	13161000			58553	10586	42717	43050	57104	57104					0.13431928344994049
VHLRPVRQL	9	Unmodified	_VHLRPVRQL_					0	0	0		ENST00000307161.5_1_4:187455227-187455620:-|nuORF	ENST00000307161.5_1_4:187455227-187455620:-|nuORF	ENST00000307161.5_1_4:187455227-187455620:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	373.236608	1116.688	0.056992	2.1271E-05	0.056711	2.1167E-05	0.1137	4.2438E-05	373.2366549925233	38.067	0.30597	38.067	37.862	38.168	0	-0.090861	-1.1454E-07	NaN	4.897	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1296600			58554	10586	42717	43050							0.13431928344994049
VHLYLWKGS	9	Unmodified	_VHLYLWKGS_					0	0	0			REV__ADAM7|p.S298L|1|0.59|ENSG00000069206|chr8:24485294-24485294|C/T|missense_variant	REV__ADAM7|p.S298L|1|0.59|ENSG00000069206|chr8:24485294-24485294|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	367.632568359375	3	368.206315	1101.59712	0.19871	7.3165E-05	-0.41106	-0.00015135	-0.21235	-7.8188E-05	368.2064279787538	64.972	0.9162	64.972	64.546	65.462	0					31	17	3	0	0	0	0.8028	1	23378	23378		2.4985	2.4985	1	2064500	+		58555	15320	42718	43051	57105	57105					0.05038039576857045
VHNLQMKL	8	Unmodified	_VHNLQMKL_					0	0	0		ENSG00000183137|ENST00000517392|CEP57L1	ENSG00000183137|ENST00000517392|CEP57L1	ENSG00000183137|ENST00000517392|CEP57L1	MULTI-SECPEP	A375_MHC_IP_R1	1	492.1959228515625	2	491.778762	981.542971	-0.16825	-8.2744E-05	-0.17767	-8.7375E-05	-0.34593	-0.00017012	491.77881440115834	51.57	0.45664	51.57	51.322	51.778	0					15	8	2	0	0	0	0.97144	1	18377	18377		9.3474	1.4373	1	977770			58556	8468	42719	43052	57106	57106					0.05146124153634446
VHPFHLLV	8	Unmodified	_VHPFHLLV_					0	0	0		CON__Q3SZH5	CON__Q3SZH5	CON__Q3SZH5	MSMS	A375_MHC_IP_R1	1	481.2072448730469	2	481.284537	960.554522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.93	1	147.93	147.43	148.43	0								0	0	0	0.16876	1	56505	56505		0.79363	0.10326	1			+	58557	618	42720	43053	57107	57107					0.07266689239270363
VHRFQQHY	8	Unmodified	_VHRFQQHY_					0	0	0			REV__nc|ENSG00000103051|Q9H9E3-3|COG4	REV__nc|ENSG00000103051|Q9H9E3-3|COG4	MULTI-SECPEP	A375_MHC_IP_R1	1	557.6656494140625	2	557.780682	1113.54681	-0.43553	-0.00024293	-1.8999	-0.0010597	-2.3354	-0.0013027	558.281035071825	56.779	0.40722	56.779	56.498	56.905	0					10	7	2	0	0	0	0.97144	1	20281	20281		9.3474	0.75416	1	681350	+		58558	17249	42721	43054	57108	57108					-0.005420700282911639
VHRGCLLS	8	Unmodified	_VHRGCLLS_					0	0	0			REV__DDX28|p.R164C|1|0.26|ENSG00000182810|chr16:68022713-68022713|G/A|missense_variant	REV__DDX28|p.R164C|1|0.26|ENSG00000182810|chr16:68022713-68022713|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	442.6410217285156	2	442.742179	883.469806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.88	1	109.62	109.12	110.12	0.74684								0	0	0	0.16876	1	41102	41102		2.5775	0	1		+		58559	15976	42722	43055	57109	57109					0.023409954310182002
VHRLIIPIF	9	Unmodified	_VHRLIIPIF_					0	0	0		ENST00000534639.1_1_11:43284362-43284860:-|nuORF	ENST00000534639.1_1_11:43284362-43284860:-|nuORF	ENST00000534639.1_1_11:43284362-43284860:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	369.2576599121094	3	369.906088	1106.69644	0.39841	0.00014738	1.181	0.00043685	1.5794	0.00058422	369.9063546524856	42.339	0.4547	42.339	42.032	42.487	0					18	8	3	0	0	0	0.81645	1	14663	14663		1.1933	0	1	1964300			58560	13215	42723	43056	57110	57110					0.14735482261608013
VHRLIIPIF	9	Unmodified	_VHRLIIPIF_					0	0	0		ENST00000534639.1_1_11:43284362-43284860:-|nuORF	ENST00000534639.1_1_11:43284362-43284860:-|nuORF	ENST00000534639.1_1_11:43284362-43284860:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	369.906088	1106.69644	0.29064	0.00010751	1.0393	0.00038446	1.33	0.00049196	369.9064519642136	41.755	0.40893	42.53	42.35	42.759	0.77451	0.095108	-3.4199E-05	NaN	1.1933	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1811200			58561	13215	42723	43056							0.14735482261608013
VHRRGASPV	9	Unmodified	_VHRRGASPV_					0	0	0		ENST00000260247.9_1_11:102962671-102962878:-|nuORF	ENST00000260247.9_1_11:102962671-102962878:-|nuORF	ENST00000260247.9_1_11:102962671-102962878:-|nuORF	MSMS	A375_MHC_IP_R2	2	489.6802062988281	2	489.783225	977.551896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.736	1	95.481	94.981	95.981	0.74474								0	0	0	0.15142	1	35997	35997		19.257	1.122	1				58562	10266	42724	43057	57111	57111					0.06222233834330382
VHRRKNRPR	9	Unmodified	_VHRRKNRPR_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	A375_MHC_IP_R2	2	1219.1405029296875	1	1218.74027	1217.73299	0.4049	0.00049347	0.37165	0.00045294	0.77655	0.00094641	1218.740675990869	145.23	0.24374	145.25	145.17	145.41	0.021408					22	14	2	0	0	0	0.77827	1	56713	56713		0	0	1	195280	+		58563	18422	42725	43058	57112	57112					0.1328317193087969
VHRRLSPAS	9	Unmodified	_VHRRLSPAS_					0	0	0			REV__nc|ENSG00000143373|Q8N1G0-2|ZNF687	REV__nc|ENSG00000143373|Q8N1G0-2|ZNF687	MSMS	A375_MHC_IP_R1	1	511.7054443359375	2	511.796332	1021.57811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.609	1	82.609	82.109	83.109	0								0	0	0	0.1535	1	30209	30209		15.847	7.2539	1		+		58564	19349	42726	43059	57113	57113					0.06818503005808907
VHSCCCCCCCS	11	Unmodified	_VHSCCCCCCCS_					0	0	0			REV__nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	REV__nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	MSMS	A375_MHC_IP_R1	1	575.6976928710938	2	575.640396	1149.26624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.311	1	42.311	41.811	42.811	0								0	0	0	0.16353	1	14657	14657		0.35063	0.35063	1		+		58565	24895	42727	43060	57114	57114					-0.3024238404693733
VHSKKRLKP	9	Unmodified	_VHSKKRLKP_					0	0	0		nc|ENSG00000145734|A6H8Y1-7|BDP1;nc|ENSG00000145734|A6H8Y1-6|BDP1;ENSG00000145734|ENST00000358731|BDP1	nc|ENSG00000145734|A6H8Y1-7|BDP1	nc|ENSG00000145734|A6H8Y1-7|BDP1	MULTI-MSMS	A375_MHC_IP_R1	1	364.94525146484375	3	364.904859	1091.69275	0.1143	4.1707E-05	-0.0034756	-1.2682E-06	0.11082	4.0439E-05	364.9048102837898	33.165	1.1135	33.165	32.585	33.698	0					43	21	3	0	0	0	0.72761	1	10876	10876		4.5289	0	1	8916100			58566	5576	42728	43061	57115	57115					0.15056812487750904
VHTALLHP	8	Unmodified	_VHTALLHP_					0	0	0		nc|ENSG00000257520|P0C7M3|SFTA3	nc|ENSG00000257520|P0C7M3|SFTA3	nc|ENSG00000257520|P0C7M3|SFTA3	MSMS	A375_MHC_IP_R2	2	444.6592102050781	2	444.25852	886.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.51	1	142.54	142.04	143.04	0.030731								0	0	0	0.16876	1	55710	55710		2.5775	0	1				58567	14925	42729	43062	57116	57116					0.05469525825526489
VHTFPAVLQ	9	Unmodified	_VHTFPAVLQ_					0	0	0		nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211896|P01857|IGHG1;CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462;nc|ENSG00000211897|P01860|IGHG3;ENST00000390555.3_1_14:106135325-106136152:-|nuORF	nc|ENSG00000211893|P01859-1|IGHG2	nc|ENSG00000211893|P01859-1|IGHG2	MULTI-SECPEP	A375_MHC_IP_R1	1	506.68426513671875	2	506.284734	1010.55492	-0.48691	-0.00024651	0.66934	0.00033888	0.18243	9.2363E-05	506.28501006455707	65.453	0.76314	65.453	65.005	65.768	0					21	14	2	0	0	0	0.16229	1	23720	23720		32.305	0	1	1465100		+	58568	572	42730	43063	57117	57117					0.05006064168458124
VHTFPAVLQ	9	Unmodified	_VHTFPAVLQ_					0	0	0		nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211896|P01857|IGHG1;CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462;nc|ENSG00000211897|P01860|IGHG3;ENST00000390555.3_1_14:106135325-106136152:-|nuORF	nc|ENSG00000211893|P01859-1|IGHG2	nc|ENSG00000211893|P01859-1|IGHG2	MULTI-SECPEP	A375_MHC_IP_R2	2	505.710693359375	2	506.284734	1010.55492	-0.67631	-0.00034241	0.27863	0.00014106	-0.39769	-0.00020134	506.28486668336825	64.498	0.81533	65.238	64.8	65.615	0.74022					19	15	2	0	0	0	0.65246	1	24446	24446		15.847	6.4997	1	1008200		+	58569	572	42730	43063	57118	57118					0.05006064168458124
VHTILANL	8	Unmodified	_VHTILANL_					0	0	0			REV__ADH1B|p.D344N|1|0.45|ENSG00000196616|chr4:99310838-99310838|C/T|missense_variant	REV__ADH1B|p.D344N|1|0.45|ENSG00000196616|chr4:99310838-99310838|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	440.604248046875	2	440.766178	879.517802	-0.19553	-8.6185E-05	0.1384	6.1004E-05	-0.05713	-2.5181E-05	440.76610151589415	76.889	0.35838	76.889	76.622	76.981	0					9	6	2	0	0	0	0.50167	1	28010	28010		42.095	0	1	954940	+		58570	15335	42731	43064	57119	57119					0.07322392622711504
VHTKAKENVV	10	Unmodified	_VHTKAKENVV_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	A375_MHC_IP_R1	1	375.61456298828125	3	375.552262	1123.63496	0.66805	0.00025089	-0.47318	-0.0001777	0.19487	7.3186E-05	375.55202915942226	22.082	0.45839	22.082	21.808	22.267	0					18	8	3	0	0	0	0.70651	1	5829	5829		8.4443	3.0416	1	6298400	+		58571	21320	42732	43065	57120	57120					0.07808505771640739
VHTSQTPVD	9	Unmodified	_VHTSQTPVD_					0	0	0		nc|ENSG00000100100|Q96FE7-3|PIK3IP1;ENST00000493034.1_1_22:31679072-31685925:-|nuORF;ENST00000480654.5_1_22:31679072-31685707:-|nuORF;nc|ENSG00000100100|Q96FE7-5|PIK3IP1;ENSG00000100100|ENST00000215912|PIK3IP1	nc|ENSG00000100100|Q96FE7-3|PIK3IP1	nc|ENSG00000100100|Q96FE7-3|PIK3IP1	MSMS	A375_MHC_IP_R1	1	492.181640625	2	492.243264	982.471974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.95	1	87.95	87.45	88.45	0								0	0	0	0.15283	1	32280	32280		16.942	0	1				58572	2118	42733	43066	57121	57121					-0.01996297350194709
VHVGAALG	8	Unmodified	_VHVGAALG_					0	0	0		nc|ENSG00000103855|Q5ZPR3-2|CD276;CD276|p.T378Rfs*2|1|0.29|ENSG00000103855|chr15:73704236-73704236|C/-|frameshift_variant;nc|ENSG00000103855|Q5ZPR3-3|CD276;nc|ENSG00000103855|Q5ZPR3-4|CD276;ENSG00000103855|ENST00000318443|CD276	nc|ENSG00000103855|Q5ZPR3-2|CD276	nc|ENSG00000103855|Q5ZPR3-2|CD276	MULTI-SECPEP	A375_MHC_IP_R1	1	723.8159790039062	1	723.4148	722.407523	-0.92136	-0.00066653	1.3067	0.00094531	0.38537	0.00027878	723.4155487000135	143.37	0.64209	143.37	143.24	143.89	0					25	12	3	0	0	0	0.972	1	55018	55018		0.79363	0	1	8870700			58573	335	42734	43067	57122	57122					0.03521592354343284
VHVGAALG	8	Unmodified	_VHVGAALG_					0	0	0		nc|ENSG00000103855|Q5ZPR3-2|CD276;CD276|p.T378Rfs*2|1|0.29|ENSG00000103855|chr15:73704236-73704236|C/-|frameshift_variant;nc|ENSG00000103855|Q5ZPR3-3|CD276;nc|ENSG00000103855|Q5ZPR3-4|CD276;ENSG00000103855|ENST00000318443|CD276	nc|ENSG00000103855|Q5ZPR3-2|CD276	nc|ENSG00000103855|Q5ZPR3-2|CD276	MULTI-MSMS	A375_MHC_IP_R2	2	724.3275146484375	1	723.4148	722.407523	-0.59325	-0.00042916	1.3849	0.0010018	0.79161	0.00057266	723.41561060534	143.39	0.65436	143.41	143.29	143.94	0.024414					21	12	2	0	0	0	0.77839	1	56041	56041		0.79363	0	1	8281500			58574	335	42734	43067	57123	57123					0.03521592354343284
VHVKWPKEPI	10	Unmodified	_VHVKWPKEPI_					0	0	0			REV__ENSG00000173473|ENST00000254480|SMARCC1	REV__ENSG00000173473|ENST00000254480|SMARCC1	MULTI-SECPEP	A375_MHC_IP_R1	1	617.261474609375	2	616.861141	1231.70773	-0.30274	-0.00018675	-0.55628	-0.00034314	-0.85901	-0.00052989	616.8606727031572	55.646	0.45998	55.646	55.381	55.841	0					12	8	2	0	0	0	0.90513	1	19910	19910		12.241	2.1667	1	2839500	+		58575	21224	42735	43068	57124	57124					0.1011425956507992
VHVKWPKEPI	10	Unmodified	_VHVKWPKEPI_					0	0	0			REV__ENSG00000173473|ENST00000254480|SMARCC1	REV__ENSG00000173473|ENST00000254480|SMARCC1	MULTI-MSMS	A375_MHC_IP_R2	2	617.2610473632812	2	616.861141	1231.70773	-0.80369	-0.00049576	-0.061121	-3.7703E-05	-0.86481	-0.00053347	616.860951739317	54.85	0.45926	55.601	55.37	55.83	0.75075					14	8	2	0	0	0	0.61662	1	20723	20723		22.736	11.242	1	3359200	+		58576	21224	42735	43068	57125	57125					0.1011425956507992
VHVKWPKEPI	10	Unmodified	_VHVKWPKEPI_					0	0	0			REV__ENSG00000173473|ENST00000254480|SMARCC1	REV__ENSG00000173473|ENST00000254480|SMARCC1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	616.861141	1231.70773	-0.80369	-0.00049576	-0.061121	-3.7703E-05	-0.86481	-0.00053347	616.860951739317	54.85	0.45926	55.601	55.37	55.83	0.75075	-0.022658	0.00026654	NaN	22.736	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3359200	+		58577	21224	42735	43068							0.1011425956507992
VHVQSVSL	8	Unmodified	_VHVQSVSL_					0	0	0			REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-SECPEP	A375_MHC_IP_R2	2	435.147705078125	2	434.747985	867.481417	-0.1653	-7.1863E-05	-0.35378	-0.00015381	-0.51908	-0.00022567	434.74771091332934	46.284	0.45773	47.049	46.855	47.313	0.76519					13	8	2	0	0	0	0.8211	1	17357	17357		30.225	15.387	1	1886600	+		58578	15715	42736	43069	57126	57126					0.04237515726015317
VHYTGMLQNGK	11	Unmodified	_VHYTGMLQNGK_					0	0	0		nc|ENSG00000119782|P68106-2|FKBP1B;ENSG00000119782|ENST00000380986|FKBP1B	nc|ENSG00000119782|P68106-2|FKBP1B	nc|ENSG00000119782|P68106-2|FKBP1B	MULTI-SECPEP	A375_MHC_IP_R1	1	415.9472961425781	3	416.54489	1246.61284	-0.0070959	-2.9558E-06	-1.651	-0.00068772	-1.6581	-0.00069068	416.87953013490755	32.61	0.30082	32.61	32.434	32.734	0					6	5	2	0	0	0	0.99227	1	10536	10536		2.6312	0.54523	1	968900			58579	3623	42737	43070	57127	57127					-0.0006004196841331577
VIAAPDSRRW	10	Unmodified	_VIAAPDSRRW_					0	0	0		ENST00000464954.1_1_1:167691199-167735064:+|nuORF;nc|ENSG00000197965|O95297-5|MPZL1;MPZL1|p.N124Kfs*32|1|0.16|ENSG00000197965|chr1:167772388-167772388|T/-|frameshift_variant;nc|ENSG00000197965|O95297-3|MPZL1;ENST00000465787.5_1_1:167691238-167742606:+|nuORF;nc|ENSG00000197965|O95297-2|MPZL1;ENSG00000197965|ENST00000359523|MPZL1	ENST00000464954.1_1_1:167691199-167735064:+|nuORF	ENST00000464954.1_1_1:167691199-167735064:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	391.2840576171875	3	390.884123	1169.63054	0.21026	8.2186E-05	0.24485	9.5707E-05	0.45511	0.00017789	390.884055779456	36.059	0.50897	36.059	35.778	36.287	0					20	9	3	0	0	0	0.5901	1	12028	12028		31.636	12.915	1	4354100			58580	12233	42738	43071	57128	57128					0.05251041348742547
VIAAPDSRRW	10	Unmodified	_VIAAPDSRRW_					0	0	0		ENST00000464954.1_1_1:167691199-167735064:+|nuORF;nc|ENSG00000197965|O95297-5|MPZL1;MPZL1|p.N124Kfs*32|1|0.16|ENSG00000197965|chr1:167772388-167772388|T/-|frameshift_variant;nc|ENSG00000197965|O95297-3|MPZL1;ENST00000465787.5_1_1:167691238-167742606:+|nuORF;nc|ENSG00000197965|O95297-2|MPZL1;ENSG00000197965|ENST00000359523|MPZL1	ENST00000464954.1_1_1:167691199-167735064:+|nuORF	ENST00000464954.1_1_1:167691199-167735064:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	391.28399658203125	3	390.884123	1169.63054	-0.40394	-0.00015789	0.72782	0.00028449	0.32388	0.0001266	390.88428096149585	35.192	0.55625	35.955	35.576	36.132	0.76338					15	10	2	0	0	0	0.70461	1	12754	12754		30.431	18.937	1	4544500			58581	12233	42738	43071	57129	57129					0.05251041348742547
VIADGGIQNV	10	Unmodified	_VIADGGIQNV_					0	0	0		ENST00000481274.1_1_3:49062288-49062724:-|nuORF;ENST00000484872.1_1_3:49061926-49062670:-|nuORF;ENSG00000178035|ENST00000326739|IMPDH2	ENST00000481274.1_1_3:49062288-49062724:-|nuORF	ENST00000481274.1_1_3:49062288-49062724:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	493.66876220703125	2	493.269281	984.52401	-0.4041	-0.00019933	0.22233	0.00010967	-0.18177	-8.9663E-05	493.2693648098209	58.404	0.60975	58.404	58.126	58.736	0					19	11	2	0	0	0	0.56504	1	20991	20991		27.629	16.829	1	2224400			58582	8127	42739	43072	57130	57130					0.031128660635772576
VIAEILRGV	9	Unmodified	_VIAEILRGV_					0	0	0		ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	A375_MHC_IP_R1	1	485.77056884765625	2	485.30821	968.601866	-0.46231	-0.00022437	-0.058962	-2.8615E-05	-0.52128	-0.00025298	485.30814963658776	85.793	2.2849	85.793	85.462	87.747	0					113	44	4	0	0	0	0.0090297	3	31510	31392;31510;31925		99.755	24.826	1	101360000			58583	2285	42740	43073	57131;57132;57133	57132					0.11630923719633302
VIAEILRGV	9	Unmodified	_VIAEILRGV_					0	0	0		ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	A375_MHC_IP_R2	2	485.7081298828125	2	485.30821	968.601866	-0.46922	-0.00022772	-0.076006	-3.6886E-05	-0.54523	-0.0002646	485.3081423883622	84.813	2.3931	85.549	85.222	87.615	0.73601					119	46	4	0	0	0	0.015356	1	32191	32191		89.401	14.472	1	65189000			58584	2285	42740	43073	57134	57134					0.11630923719633302
VIAEILRGV	9	Unmodified	_VIAEILRGV_					0	0	0		ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MSMS	A375_MHC_IP_R2	2	485.359619140625	2	485.30821	968.601866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.388	1	88.121	87.621	88.621	0.73229								0	0	0	0.11922	1	33234	33234		36.127	7.0454	1				58585	2285	42740	43073	57135	57135					0.11630923719633302
VIAEPKNK	8	Unmodified	_VIAEPKNK_					0	0	0		tr|U7T5C5|U7T5C5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00520PE=4SV=1	tr|U7T5C5|U7T5C5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00520PE=4SV=1	tr|U7T5C5|U7T5C5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00520PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	450.4023132324219	2	449.77146	897.528367	-0.24983	-0.00011237	-0.077833	-3.5007E-05	-0.32767	-0.00014737	449.7713840873326	41.99	1.526	42.765	42.453	43.979	0.77451					67	29	5	0	0	0	0.51581	1	15772	15772		48.346	7.8973	1	154690000			58586	30019	42741	43074	57136	57136					0.07550375277139665
VIAGENPK	8	Unmodified	_VIAGENPK_					0	0	0			REV__ENSG00000004478|ENST00000001008|FKBP4	REV__ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	A375_MHC_IP_R2	2	414.63531494140625	2	414.23471	826.454868	0.19568	8.1057E-05	2.0185	0.00083614	2.2142	0.0009172	414.2352193093037	142.33	0.25464	142.36	142.18	142.43	0.030731					7	4	3	0	0	0	0.7779	1	55666	55666		2.5775	0	1	2906600	+		58587	16096	42742	43075	57137	57137					0.034698268346687655
VIAQHLTVT	9	Unmodified	_VIAQHLTVT_					0	0	0		tr|U7T4H8|U7T4H8_FUSNUSpermidine/putrescinetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00343PE=3SV=1	tr|U7T4H8|U7T4H8_FUSNUSpermidine/putrescinetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00343PE=3SV=1	tr|U7T4H8|U7T4H8_FUSNUSpermidine/putrescinetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00343PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	490.694091796875	2	491.290017	980.565481	-0.48634	-0.00023893	-0.73856	-0.00036285	-1.2249	-0.00060178	491.289776484683	83.621	0.45958	84.361	84.099	84.559	0.73962					10	8	2	0	0	0	0.55359	1	31686	31686		15.847	4.2069	1	960350			58588	30001	42743	43076	57138	57138					0.07442046822893644
VIAQQVQL	8	Unmodified	_VIAQQVQL_					0	0	0		ENSG00000090447|ENST00000204517|TFAP4	ENSG00000090447|ENST00000204517|TFAP4	ENSG00000090447|ENST00000204517|TFAP4	MULTI-MSMS	A375_MHC_IP_R2	2	450.69964599609375	2	449.77146	897.528367	-0.24983	-0.00011237	-0.077833	-3.5007E-05	-0.32767	-0.00014737	449.7713840873326	41.99	1.526	42.765	42.453	43.979	0.77451					67	29	5	0	0	0	0.64599	1	15580	15580		42.968	3.0107	1	154690000			58589	1952	42744	43077	57139	57139					0.07550375277151034
VIARGHAFVL	10	Unmodified	_VIARGHAFVL_					0	0	0		ENSG00000162595|ENST00000646789|DIRAS3	ENSG00000162595|ENST00000646789|DIRAS3	ENSG00000162595|ENST00000646789|DIRAS3	MSMS	A375_MHC_IP_R2	2	541.652587890625	2	541.827101	1081.63965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.445	1	89.176	88.676	89.676	0.7318								0	0	0	0.15329	1	33658	33658		16.942	8.7868	1				58590	6555	42745	43078	57140	57140					0.1020943470509792
VIATGLVTLV	10	Unmodified	_VIATGLVTLV_					0	0	0		ENSG00000176194|ENST00000320477|CIDEA	ENSG00000176194|ENST00000320477|CIDEA	ENSG00000176194|ENST00000320477|CIDEA	MULTI-SECPEP	A375_MHC_IP_R1	1	493.1973571777344	2	493.318243	984.621933	-0.54838	-0.00027053	0.97556	0.00048126	0.42718	0.00021074	493.31895840788627	86.396	1.4704	86.396	85.462	86.933	0					35	28	3	0	0	0	0.65982	1	31624	31624		20.454	0	1	3425600			58591	8007	42746	43079	57141	57141					0.1290067465957918
VIATGLVTLV	10	Unmodified	_VIATGLVTLV_					0	0	0		ENSG00000176194|ENST00000320477|CIDEA	ENSG00000176194|ENST00000320477|CIDEA	ENSG00000176194|ENST00000320477|CIDEA	MULTI-MSMS	A375_MHC_IP_R2	2	493.718017578125	2	493.318243	984.621933	-0.34752	-0.00017144	0.14126	6.9686E-05	-0.20626	-0.00010175	493.3184702465293	85.375	0.91717	86.111	85.574	86.492	0.73601					24	17	2	0	0	0	0.23156	1	32458	32458		46.021	0	1	2818700			58592	8007	42746	43079	57142	57142					0.1290067465957918
VIAVGVFLLF	10	Unmodified	_VIAVGVFLLF_					0	0	0		TSPAN31|p.L58F|1|0.6|ENSG00000135452|chr12:57745853-57745853|C/T|missense_variant	TSPAN31|p.L58F|1|0.6|ENSG00000135452|chr12:57745853-57745853|C/T|missense_variant	TSPAN31|p.L58F|1|0.6|ENSG00000135452|chr12:57745853-57745853|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	539.7380981445312	2	539.338978	1076.6634	-0.91449	-0.00049322	-0.3231	-0.00017426	-1.2376	-0.00066748	539.3385767921601	128.79	0.20198	129.03	128.91	129.11	0.23946					5	3	2	0	0	0	0.54916	1	50628	50628		24.674	0	1	5440700			58593	30088	42747	43080	57143	57143					0.12813855418903586
VIAVGVFLLF	10	Unmodified	_VIAVGVFLLF_					0	0	0		TSPAN31|p.L58F|1|0.6|ENSG00000135452|chr12:57745853-57745853|C/T|missense_variant	TSPAN31|p.L58F|1|0.6|ENSG00000135452|chr12:57745853-57745853|C/T|missense_variant	TSPAN31|p.L58F|1|0.6|ENSG00000135452|chr12:57745853-57745853|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	539.338978	1076.6634	-0.72383	-0.00039039	0.68751	0.0003708	-0.036318	-1.9588E-05	539.339014868515	129.07	0.20378	129.07	128.94	129.14	0	0.016791	0.00072837	NaN	24.674	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3162900			58594	30088	42747	43080							0.12813855418903586
VIDDGPPLQL	10	Unmodified	_VIDDGPPLQL_					0	0	0			REV__nc|ENSG00000137948|Q58F21-4|BRDT	REV__nc|ENSG00000137948|Q58F21-4|BRDT	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1915283203125	2	533.792589	1065.57063	-0.78878	-0.00042105	0.26932	0.00014376	-0.51947	-0.00027729	533.7927299044875	106.24	0.9677	107	106.53	107.5	0.75977					34	18	3	0	0	0	0.27864	1	40172	40172		34.402	0	1	2147900	+		58595	27252	42748	43081	57144	57144					0.04046305894848956
VIDDPQETY	9	Unmodified	_VIDDPQETY_					0	0	0		ENSG00000185989|ENST00000334062|RASA3;nc|ENSG00000185989|Q14644-2|RASA3	ENSG00000185989|ENST00000334062|RASA3	ENSG00000185989|ENST00000334062|RASA3	MULTI-MSMS	A375_MHC_IP_R1	1	540.6480102539062	2	540.248212	1078.48187	-0.79104	-0.00042736	0.10358	5.5957E-05	-0.68746	-0.0003714	540.2482045109615	47.003	0.56385	47.003	46.647	47.211	0					26	10	3	0	0	0	0.10411	1	16476	16476		49.933	25.259	1	6301200			58596	8714	42749	43082	57145	57145					-0.05423154135451114
VIDDPQETY	9	Unmodified	_VIDDPQETY_					0	0	0		ENSG00000185989|ENST00000334062|RASA3;nc|ENSG00000185989|Q14644-2|RASA3	ENSG00000185989|ENST00000334062|RASA3	ENSG00000185989|ENST00000334062|RASA3	MULTI-SECPEP	A375_MHC_IP_R2	2	540.6473388671875	2	540.248212	1078.48187	-0.73423	-0.00039667	-0.1223	-6.6074E-05	-0.85654	-0.00046274	540.2480140436514	46.369	0.56011	47.134	46.855	47.416	0.76519					25	10	3	0	0	0	0.20645	1	17350	17350		56.177	40.028	1	4803900			58597	8714	42749	43082	57146	57146					-0.05423154135451114
VIDDRLPTV	9	Unmodified	_VIDDRLPTV_					0	0	0		ENSG00000149260|ENST00000648180|CAPN5;ENST00000533889.1_1_11:76804778-76823844:+|nuORF	ENSG00000149260|ENST00000648180|CAPN5	ENSG00000149260|ENST00000648180|CAPN5	MULTI-SECPEP	A375_MHC_IP_R2	2	514.6925048828125	2	514.292756	1026.57096	-0.79983	-0.00041135	-0.23069	-0.00011864	-1.0305	-0.00052999	514.2926285839831	62.716	0.60564	63.459	63.079	63.685	0.74263					18	11	2	0	0	0	0.10495	1	23743	23743		49.527	11.352	1	4896000			58598	5793	42750	43083	57147	57147					0.05873725614696923
VIDDRLPTV	9	Unmodified	_VIDDRLPTV_					0	0	0		ENSG00000149260|ENST00000648180|CAPN5;ENST00000533889.1_1_11:76804778-76823844:+|nuORF	ENSG00000149260|ENST00000648180|CAPN5	ENSG00000149260|ENST00000648180|CAPN5	MULTI-MATCH	A375_MHC_IP_R1	1		2	514.292756	1026.57096	-0.46015	-0.00023665	-0.036205	-1.862E-05	-0.49636	-0.00025527	514.2928002346202	63.352	0.51122	63.352	63.121	63.632	0	-0.053792	0.00013065	NaN	49.527	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5196900			58599	5793	42750	43083							0.05873725614696923
VIDDWCRCD	9	Unmodified	_VIDDWCRCD_					0	0	0		nc|ENSG00000148219|O75129-2|ASTN2;nc|ENSG00000148219|O75129-3|ASTN2;ENSG00000148219|ENST00000313400|ASTN2;nc|ENSG00000148219|O75129-6|ASTN2;nc|ENSG00000148219|O75129-4|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	MULTI-MSMS	A375_MHC_IP_R1	1	563.2027587890625	2	562.728609	1123.44266	-0.4881	-0.00027467	-2.1622	-0.0012167	-2.6503	-0.0014914	562.7276727984637	64.571	0.5586	64.571	64.242	64.8	0					14	10	2	0	0	0	0.68216	1	23316	23316		8.5933	0	1	920920			58600	5725	42751	43084	57148	57148					-0.1141190096234368
VIDEKKANI	9	Unmodified	_VIDEKKANI_					0	0	0			REV__tr|U7SUG4|U7SUG4_FUSNUNitronatemonooxygenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01225PE=4SV=1	REV__tr|U7SUG4|U7SUG4_FUSNUNitronatemonooxygenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01225PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	514.6500854492188	2	515.300581	1028.58661	-0.83533	-0.00043045	0.88374	0.00045539	0.048407	2.4944E-05	515.3010131284515	66.886	0.40732	67.623	67.393	67.801	0.73631					12	7	2	0	0	0	0.63327	1	25377	25377		18.146	7.3224	1	1896300	+		58601	28556	42752	43085	57149	57149					0.07346012131756652
VIDEQQSPD	9	Unmodified	_VIDEQQSPD_					0	0	0		ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MSMS	A375_MHC_IP_R2	2	515.6897583007812	2	515.738011	1029.46147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.63	1	52.382	51.882	52.882	0.75225								0	0	0	0.1535	1	19433	19433		15.847	1.2655	1				58602	1486	42753	43086	57150	57150					-0.052083247952623424
VIDEQTPLY	9	Unmodified	_VIDEQTPLY_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;ENST00000500085.2_1_4:187509748-187518366:-|nuORF	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	A375_MHC_IP_R1	1	539.6763916015625	2	539.276772	1076.53899	-0.46722	-0.00025196	0.41537	0.000224	-0.051848	-2.796E-05	539.7791060064059	71.479	0.60454	71.479	71.211	71.815	0					19	11	3	0	0	0	0.17338	1	25995	25995		39.95	9.3132	1	3199200			58603	1791	42754	43087	57151	57151					0.0037831314093637047
VIDEVRTGTY	10	Unmodified	_VIDEVRTGTY_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENST00000548363.1_1_12:49580068-49582762:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-SECPEP	A375_MHC_IP_R2	2	577.1981811523438	2	576.798403	1151.58225	-0.35132	-0.00020264	0.18129	0.00010457	-0.17003	-9.8071E-05	576.7982895038697	37.766	0.56449	38.541	38.227	38.791	0.77451					17	10	2	0	0	0	0.17911	1	13839	13839		68.76	28.521	1	6572300			58604	3846	42755	43088	57152	57152					0.012525029182143044
VIDGDKEIY	9	Unmodified	_VIDGDKEIY_					0	0	0			REV__tr|U7T0Z7|U7T0Z7_FUSNUPhosphoesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00751PE=3SV=1	REV__tr|U7T0Z7|U7T0Z7_FUSNUPhosphoesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00751PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	526.182373046875	2	526.268947	1050.52334	-0.31086	-0.0001636	-2.2301	-0.0011736	-2.541	-0.0013372	526.2673149030489	49.819	0.71407	49.819	49.591	50.305	0					18	13	2	0	0	0	0.38578	1	17655	17655		41.84	7.6523	1	2842600	+		58605	28687	42756	43089	57153	57153					0.00010026623863268469
VIDGDKEIY	9	Unmodified	_VIDGDKEIY_					0	0	0			REV__tr|U7T0Z7|U7T0Z7_FUSNUPhosphoesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00751PE=3SV=1	REV__tr|U7T0Z7|U7T0Z7_FUSNUPhosphoesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00751PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1820678710938	2	526.268947	1050.52334	-0.68785	-0.00036199	-1.2377	-0.00065135	-1.9255	-0.0010133	526.2684503648032	49.18	0.60645	49.937	49.741	50.348	0.75737					20	11	2	0	0	0	0.16676	1	18478	18478		58.679	14.821	1	2538100	+		58606	28687	42756	43089	57154	57154					0.00010026623863268469
VIDGHIYAV	9	Unmodified	_VIDGHIYAV_					0	0	0		ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	494.16839599609375	2	493.768917	985.523281	-0.81952	-0.00040465	0.28795	0.00014218	-0.53156	-0.00026247	493.76901806832745	56.379	0.71408	57.13	56.847	57.561	0.75014					27	13	3	0	0	0	0.10969	1	21296	21296		67.344	33.241	1	6568600			58607	1706	42757	43090	57155	57155					0.0299407141451411
VIDGRTGALW	10	Unmodified	_VIDGRTGALW_					0	0	0		ENST00000483208.5_2_15:42686532-42691793:+|nuORF	ENST00000483208.5_2_15:42686532-42691793:+|nuORF	ENST00000483208.5_2_15:42686532-42691793:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	363.2503356933594	3	363.201341	1086.58219	-0.32576	-0.00011832	0.050294	1.8267E-05	-0.27547	-0.00010005	363.20121063459266	35.413	0.60798	36.176	35.878	36.486	0.76338					14	11	2	0	0	0	0.70793	1	12914	12914		5.0475	0	1	1781700			58608	12539	42758	43091	57156	57156					0.04236547708865146
VIDIFFYL	8	Unmodified	_VIDIFFYL_					0	0	0			REV__tr|U7SNK8|U7SNK8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02026PE=4SV=1	REV__tr|U7SNK8|U7SNK8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02026PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	515.455078125	2	515.286411	1028.55827	-0.37362	-0.00019252	0.18736	9.6542E-05	-0.18626	-9.5979E-05	515.2860497381272	54.306	0.45387	54.306	54.113	54.567	0					24	8	5	0	0	0	0.72761	1	19389	19389		26.341	0	1	4066200	+		58609	28334	42759	43092	57157	57157					0.04513314222481313
VIDIHTLRIK	10	Unmodified	_VIDIHTLRIK_					0	0	0		ENSG00000164484|ENST00000296978|TMEM200A	ENSG00000164484|ENST00000296978|TMEM200A	ENSG00000164484|ENST00000296978|TMEM200A	MSMS	A375_MHC_IP_R2	2	604.3831787109375	2	604.379697	1206.74484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.57	1	103.33	102.83	103.83	0.76428								0	0	0	0.15435	1	38860	38860		6.7232	2.3939	1				58610	6843	42760	43093	57158	57158					0.14973931110830563
VIDKLRKVGP	10	Unmodified	_VIDKLRKVGP_					0	0	0			REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19	REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19	MSMS	A375_MHC_IP_R2	2	562.8917236328125	2	562.861141	1123.70773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.052	1	92.791	92.291	93.291	0.73902								0	0	0	0.15522	1	35009	35009		7.2892	0.56607	1		+		58611	20558	42761	43094	57159	57159					0.15082259565087952
VIDMSEMFE	9	Unmodified	_VIDMSEMFE_					0	0	0		tr|U7T505|U7T505_FUSNUBacterialsurfaceprotein26-residueOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00260PE=4SV=1	tr|U7T505|U7T505_FUSNUBacterialsurfaceprotein26-residueOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00260PE=4SV=1	tr|U7T505|U7T505_FUSNUBacterialsurfaceprotein26-residueOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00260PE=4SV=1	MSMS	A375_MHC_IP_R2	2	550.6868896484375	2	550.735568	1099.45658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.262	1	58.011	57.511	58.511	0.74894								0	0	0	0.15486	1	21650	21650		7.9102	0	1				58612	30008	42762	43095	57160	57160					-0.08916668253891658
VIDPESGNTLY	11	Unmodified	_VIDPESGNTLY_					0	0	0		ENST00000546531.5_1_12:49396684-49399341:-|nuORF;nc|ENSG00000181929|P54619-2|PRKAG1;ENSG00000181929|ENST00000548065|PRKAG1;nc|ENSG00000181929|P54619-3|PRKAG1;ENST00000550448.5_1_12:49398244-49398481:-|nuORF	ENST00000546531.5_1_12:49396684-49399341:-|nuORF	ENST00000546531.5_1_12:49396684-49399341:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	604.6952514648438	2	604.295693	1206.57683	-0.34974	-0.00021135	0.29067	0.00017565	-0.059071	-3.5696E-05	604.295761344329	73.36	1.0649	73.36	72.93	73.995	0					61	20	4	0	0	0	0.0013296	1	26653	26653		100.09	54.391	1	31147000			58613	8368	42763	43096	57161	57161					-0.01819220664265231
VIDPESGNTLY	11	Unmodified	_VIDPESGNTLY_					0	0	0		ENST00000546531.5_1_12:49396684-49399341:-|nuORF;nc|ENSG00000181929|P54619-2|PRKAG1;ENSG00000181929|ENST00000548065|PRKAG1;nc|ENSG00000181929|P54619-3|PRKAG1;ENST00000550448.5_1_12:49398244-49398481:-|nuORF	ENST00000546531.5_1_12:49396684-49399341:-|nuORF	ENST00000546531.5_1_12:49396684-49399341:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	604.695068359375	2	604.295693	1206.57683	-0.51059	-0.00030855	-0.074354	-4.4932E-05	-0.58494	-0.00035348	604.2955345890459	72.757	1.0189	73.493	73.073	74.091	0.73541					59	19	4	0	0	0	0.025265	2	27545	27545;27759		84.522	40.75	1	27305000			58614	8368	42763	43096	57162;57163	57162					-0.01819220664265231
VIDPRVPWW	9	Unmodified	_VIDPRVPWW_					0	0	0		ENST00000568731.1_1_16:50334743-50335713:+|nuORF	ENST00000568731.1_1_16:50334743-50335713:+|nuORF	ENST00000568731.1_1_16:50334743-50335713:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	390.95086669921875	3	389.881831	1166.62366	-0.13045	-5.0861E-05	-1.835	-0.00071544	-1.9655	-0.0007663	389.8805495679252	67.633	0.81444	68.37	67.9	68.715	0.73631					37	15	4	0	0	0	0.65748	1	25591	25591		10.8	2.644	1	4165600			58615	13583	42764	43097	57164	57164					0.047017284681714955
VIDQKVYEI	9	Unmodified	_VIDQKVYEI_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000406934.5_1_22:38246060-38259001:+|nuORF;ENST00000476955.5_1_22:38245435-38266306:+|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-SECPEP	A375_MHC_IP_R1	1	553.1640625	2	553.808239	1105.60193	-0.48826	-0.0002704	-0.48412	-0.00026811	-0.97239	-0.00053852	553.807698811921	56.983	1.0696	56.983	56.701	57.771	0					47	20	4	0	0	0	0.011004	1	20431	20431		143.91	46.974	1	31406000			58616	2123	42765	43098	57165	57165					0.05334878928965736
VIDQKVYEI	9	Unmodified	_VIDQKVYEI_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000406934.5_1_22:38246060-38259001:+|nuORF;ENST00000476955.5_1_22:38245435-38266306:+|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-SECPEP	A375_MHC_IP_R2	2	554.207763671875	2	553.808239	1105.60193	-1.058	-0.00058591	-0.36373	-0.00020144	-1.4217	-0.00078735	553.8078459576299	56.218	0.9689	56.969	56.693	57.662	0.75015					54	18	4	0	0	0	0.011418	1	21211	21211		114.19	17.251	1	31544000			58617	2123	42765	43098	57166	57166					0.05334878928965736
VIDTHGHLI	9	Unmodified	_VIDTHGHLI_					0	0	0			REV__ENSG00000183751|ENST00000568546|TBL3	REV__ENSG00000183751|ENST00000568546|TBL3	MULTI-SECPEP	A375_MHC_IP_R2	2	502.16583251953125	2	502.779816	1003.54508	-0.85651	-0.00043064	1.6885	0.00084894	0.83198	0.0004183	502.7798244377248	54.392	0.30216	55.143	55.018	55.32	0.75075					7	5	2	0	0	0	0.65246	1	20527	20527		15.847	7.2539	1	418110	+		58618	21775	42766	43099	57167	57167					0.04344876163088429
VIDWHNYGY	9	Unmodified	_VIDWHNYGY_					0	0	0		nc|ENSG00000033011|Q9BT22-2|ALG1;ENSG00000033011|ENST00000262374|ALG1	nc|ENSG00000033011|Q9BT22-2|ALG1	nc|ENSG00000033011|Q9BT22-2|ALG1	MULTI-MSMS	A375_MHC_IP_R1	1	584.7296142578125	2	583.766906	1165.51926	-0.22424	-0.00013091	-1.5428	-0.00090066	-1.7671	-0.0010316	583.7666778266051	73.177	1.1136	73.177	72.83	73.943	0					54	21	5	0	0	0	0.1478	1	26634	26634		42.095	22.838	1	6206600			58619	1119	42767	43100	57168	57168					-0.0568801807919499
VIDWHNYGY	9	Unmodified	_VIDWHNYGY_					0	0	0		nc|ENSG00000033011|Q9BT22-2|ALG1;ENSG00000033011|ENST00000262374|ALG1	nc|ENSG00000033011|Q9BT22-2|ALG1	nc|ENSG00000033011|Q9BT22-2|ALG1	MULTI-MSMS	A375_MHC_IP_R2	2	584.1663208007812	2	583.766906	1165.51926	-0.54285	-0.0003169	-0.19175	-0.00011194	-0.73461	-0.00042884	583.7667757013161	72.568	0.8133	73.303	73.022	73.836	0.73541					30	15	3	0	0	0	0.066859	1	27511	27511		57.722	37.268	1	6796000			58620	1119	42767	43100	57169	57169					-0.0568801807919499
VIEFFLYV	8	Unmodified	_VIEFFLYV_					0	0	0		nc|ENSG00000074803|Q13621-3|SLC12A1;ENSG00000074803|ENST00000380993|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	MULTI-SECPEP	A375_MHC_IP_R1	1	515.6854248046875	2	515.286411	1028.55827	-0.37362	-0.00019252	0.18736	9.6542E-05	-0.18626	-9.5979E-05	515.2860497381272	54.306	0.45387	54.306	54.113	54.567	0					24	8	5	0	0	0	0.93416	1	19401	19401		20.871	0	1	4066200			58621	1594	42768	43101	57170	57170					0.04513314222481313
VIEKLPYKIPI	11	Unmodified	_VIEKLPYKIPI_					0	0	0			REV__ENSG00000196305|ENST00000443024|IARS1	REV__ENSG00000196305|ENST00000443024|IARS1	MSMS	A375_MHC_IP_R2	2	657.0526123046875	2	656.915581	1311.81661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.969	1	96.719	96.219	97.219	0.75045								0	0	0	0.1629	1	36446	36446		3.5965	0	1		+		58622	22180	42769	43102	57171	57171					0.1731742574470445
VIFAIFSAI	9	Unmodified	_VIFAIFSAI_					0	0	0		ENSG00000005486|ENST00000006777|RHBDD2;nc|ENSG00000005486|Q6NTF9-2|RHBDD2	ENSG00000005486|ENST00000006777|RHBDD2	ENSG00000005486|ENST00000006777|RHBDD2	MSMS	A375_MHC_IP_R2	2	490.7001037597656	2	490.794404	979.574254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.113	1	91.847	91.347	92.347	0.7345								0	0	0	0.13805	1	34669	34669		30.225	1.738	1				58623	896	42770	43103	57172	57172					0.08365020459370953
VIFCFGWY	8	Unmodified	_VIFCFGWY_					0	0	0		MBOAT1|p.I467*|1|0.08|ENSG00000172197|chr6:20102375-20102375|T/-|frameshift_variant;ENSG00000172197|ENST00000324607|MBOAT1;nc|ENSG00000172197|Q6ZNC8-3|MBOAT1	MBOAT1|p.I467*|1|0.08|ENSG00000172197|chr6:20102375-20102375|T/-|frameshift_variant	MBOAT1|p.I467*|1|0.08|ENSG00000172197|chr6:20102375-20102375|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1823120117188	2	517.743857	1033.47316	-0.66427	-0.00034392	0.22615	0.00011709	-0.43812	-0.00022683	517.7439162930378	83.949	0.76817	84.689	84.254	85.022	0.73962					36	14	3	0	0	0	0.95327	1	31926	31926		11.114	11.114	1	8858400			58624	7687	42771	43104	57173	57173					-0.04223754514987377
VIFDLPTTV	9	Unmodified	_VIFDLPTTV_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	MULTI-SECPEP	A375_MHC_IP_R1	1	503.1864929199219	2	502.786776	1003.559	0.10549	5.3038E-05	-0.28868	-0.00014514	-0.18319	-9.2104E-05	502.7865882638952	126.99	0.30285	126.99	126.86	127.16	0					9	5	2	0	0	0	0.011358	1	48616	48616		120.45	53.107	1	9836700			58625	1201	42772	43105	57174	57174					0.0573610887150835
VIFDLPTTV	9	Unmodified	_VIFDLPTTV_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	MULTI-MSMS	A375_MHC_IP_R2	2	1004.4763793945312	1	1004.56627	1003.559	0.040383	4.0568E-05	0.39221	0.000394	0.43259	0.00043457	1004.5660244886735	126.61	0.50673	126.88	126.75	127.26	0.26593					14	9	2	0	0	0	0.10411	1	49507	49507		49.933	23.049	1	18935000			58626	1201	42772	43105	57175	57175					0.0573610887150835
VIFDLPTTV	9	Unmodified	_VIFDLPTTV_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1866760253906	2	502.786776	1003.559	-0.61059	-0.000307	0.63215	0.00031784	0.021561	1.084E-05	502.787121280651	126.63	0.45558	126.9	126.75	127.21	0.26592					13	8	2	0	0	0	0.011031	1	49585	49585		133.7	55.718	1	8826700			58627	1201	42772	43105	57176	57176					0.0573610887150835
VIFDLPTTV	9	Unmodified	_VIFDLPTTV_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	MULTI-MATCH	A375_MHC_IP_R1	1		1	1004.56627	1003.559	0.68182	0.00068494	0.40897	0.00041083	1.0908	0.0010958	1004.5665522324279	126.99	0.30193	126.99	126.81	127.11	0	0.054056	1.2524E-05	NaN	49.933	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19786000			58628	1201	42772	43105							0.0573610887150835
VIFIELER	8	Unmodified	_VIFIELER_					0	0	0			REV__nc|ENSG00000270751|B0L3A2|FBXW7-AS1	REV__nc|ENSG00000270751|B0L3A2|FBXW7-AS1	MULTI-MSMS	A375_MHC_IP_R2	2	511.31689453125	2	509.800217	1017.58588	-0.7748	-0.00039499	0.16505	8.4145E-05	-0.60975	-0.00031085	509.80026673455376	31.388	0.45961	32.106	31.923	32.383	0.71857					21	8	4	0	0	0	0.76248	1	11110	11110		16.942	0	1	22902000	+		58629	27541	42773	43106	57177	57177					0.07779217482709555
VIFLNRKILL	10	Unmodified	_VIFLNRKILL_					0	0	0		ENSG00000172890|ENST00000319023|NADSYN1;ENST00000524949.5_1_11:71164342-71175189:+|nuORF;ENST00000533769.5_1_11:71164342-71177788:+|nuORF	ENSG00000172890|ENST00000319023|NADSYN1	ENSG00000172890|ENST00000319023|NADSYN1	MSMS	A375_MHC_IP_R1	1	615.2498168945312	2	614.910633	1227.80671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.63	1	134.63	134.13	135.13	0								0	0	0	0.15577	1	51915	51915		4.3292	0	1				58630	7743	42774	43107	57178	57178					0.2019228252997891
VIFQFPLQW	9	Unmodified	_VIFQFPLQW_					0	0	0		nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1	nc|ENSG00000181019|P15559-2|NQO1	nc|ENSG00000181019|P15559-2|NQO1	MULTI-MSMS	A375_MHC_IP_R2	2	589.7235717773438	2	589.32386	1176.63317	-0.44562	-0.00026261	0.022796	1.3434E-05	-0.42282	-0.00024918	589.3237319974535	134.99	0.15169	135.13	135.05	135.2	0.13901					4	2	2	0	0	0	0.2415	1	53113	53113		46.021	46.021	1	2948200			58631	8329	42775	43108	57179	57179					0.05191496753695901
VIFQFPLQW	9	Unmodified	_VIFQFPLQW_					0	0	0		nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1	nc|ENSG00000181019|P15559-2|NQO1	nc|ENSG00000181019|P15559-2|NQO1	MULTI-MATCH	A375_MHC_IP_R1	1		2	589.32386	1176.63317	-0.58806	-0.00034656	-0.046061	-2.7145E-05	-0.63412	-0.0003737	589.8252996941145	135.11	0.2049	135.11	135.03	135.23	0	-0.0093379	-4.7597E-05	NaN	46.021	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4432900			58632	8329	42775	43108							0.05191496753695901
VIFRQRDGKG	10	Unmodified	_VIFRQRDGKG_					0	0	0			REV__PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant	REV__PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	587.7192993164062	2	588.335821	1174.65709	-0.5066	-0.00029805	-0.70795	-0.00041651	-1.2146	-0.00071457	588.3353322860664	130.08	1.0148	130.08	129.8	130.82	0					29	19	2	0	0	0	0.92389	1	49960	49960		3.9444	0	1	50371000	+		58633	27774	42776	43109	57180	57180					0.07674730240069039
VIFRWWKISLR	11	Unmodified	_VIFRWWKISLR_					0	0	0		nc|ENSG00000153832|Q8NEA4-3|FBXO36;ENSG00000153832|ENST00000283946|FBXO36;ENST00000465090.2_1_2:230787229-230841127:+|nuORF	nc|ENSG00000153832|Q8NEA4-3|FBXO36	nc|ENSG00000153832|Q8NEA4-3|FBXO36	MSMS	A375_MHC_IP_R1	1	502.03424072265625	3	501.969751	1502.88742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.44	1	139.44	138.94	139.94	0								0	0	0	0.16353	1	53597	53597		0.094841	0	1				58634	6044	42777	43110	57181	57181					0.15609563572888874
VIFSEMGLHIS	11	Unmodified	_VIFSEMGLHIS_					0	0	0			REV__nc|ENSG00000110931|Q96RR4-7|CAMKK2	REV__nc|ENSG00000110931|Q96RR4-7|CAMKK2	MULTI-SECPEP	A375_MHC_IP_R2	2	410.9577941894531	3	411.549641	1231.62709	-0.25144	-0.00010348	3.9924	0.0016431	3.741	0.0015396	411.5509537311048	18.921	0.3307	19.524	19.452	19.783	0.60308					8	6	2	0	0	0	0.98591	1	5772	5772		7.4771	2.0744	1	3374800	+		58635	27172	42778	43111	57182	57182					0.020546104598906823
VIFSLASKAL	10	Unmodified	_VIFSLASKAL_					0	0	0		tr|U7SUY8|U7SUY8_FUSNUCytochromec-typebiogenesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01441PE=4SV=1	tr|U7SUY8|U7SUY8_FUSNUCytochromec-typebiogenesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01441PE=4SV=1	tr|U7SUY8|U7SUY8_FUSNUCytochromec-typebiogenesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01441PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6399536132812	2	524.823692	1047.63283	-0.59735	-0.0003135	-0.21446	-0.00011255	-0.81181	-0.00042606	525.3249390252233	87.055	0.30421	87.055	86.881	87.186	0					8	5	2	0	0	0	0.92957	1	31942	31942		10.074	0	1	537700			58636	29780	42779	43112	57183	57183					0.11092077033845271
VIFTKFDEV	9	Unmodified	_VIFTKFDEV_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-SECPEP	A375_MHC_IP_R2	2	549.6798095703125	2	549.297507	1096.58046	-0.77061	-0.00042329	0.85742	0.00047098	0.086808	4.7684E-05	549.2978067493851	80.122	0.45448	80.867	80.657	81.112	0.74474					12	8	2	0	0	0	0.57806	1	30389	30389		32.786	12.332	1	1712000			58637	1576	42780	43113	57184	57184					0.03603493900232024
VIGDRSLIV	9	Unmodified	_VIGDRSLIV_					0	0	0			REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	MULTI-SECPEP	A375_MHC_IP_R2	2	486.69757080078125	2	486.297842	970.581131	-0.51974	-0.00025275	0.030868	1.5011E-05	-0.48887	-0.00023774	486.29775907104266	89.328	0.55262	90.06	89.786	90.339	0.7318					16	10	2	0	0	0	0.46045	1	34018	34018		36.127	5.9022	1	2061100	+		58638	21559	42781	43114	57185	57185					0.09466333339946686
VIGDVIRVY	9	Unmodified	_VIGDVIRVY_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-SECPEP	A375_MHC_IP_R1	1	517.7053833007812	2	517.305667	1032.59678	-0.53179	-0.0002751	0.45218	0.00023392	-0.079608	-4.1182E-05	517.3056844921713	79.828	1.3287	79.828	78.859	80.187	0					50	25	4	0	0	0	0.16595	1	29098	29098		53.404	19.002	1	10018000			58639	6987	42782	43115	57186	57186					0.08178619856994374
VIGDVIRVY	9	Unmodified	_VIGDVIRVY_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-SECPEP	A375_MHC_IP_R2	2	517.7056884765625	2	517.305667	1032.59678	-0.66189	-0.0003424	-0.18353	-9.494E-05	-0.84542	-0.00043734	517.3054868545254	78.974	1.2695	79.718	78.778	80.047	0.74474					54	24	4	0	0	0	0.23894	1	29940	29940		47.594	16.958	1	11222000			58640	6987	42782	43115	57187	57187					0.08178619856994374
VIGIILVPQ	9	Unmodified	_VIGIILVPQ_					0	0	0		ENSG00000145217|ENST00000398516|SLC26A1;nc|ENSG00000145217|Q9H2B4-2|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	MULTI-SECPEP	A375_MHC_IP_R2	2	951.8966064453125	1	951.62373	950.616454	-0.19837	-0.00018878	0.65884	0.00062697	0.46046	0.00043819	951.6240652477276	129.43	0.30246	129.67	129.47	129.77	0.23947					7	5	2	0	0	0	0.77834	1	50826	50826		4.756	0	1	1365200			58641	5542	42783	43116	57188	57188					0.13916995867748483
VIGQLREMLEY	11	Unmodified	_VIGQLREMLEY_					0	0	0			REV__nc|ENSG00000158286|Q6ZRF8-4|RNF207	REV__nc|ENSG00000158286|Q6ZRF8-4|RNF207	MULTI-MSMS	A375_MHC_IP_R1	1	676.2698974609375	2	675.857938	1349.70132	-0.94087	-0.00063589	0.61038	0.00041253	-0.33049	-0.00022336	675.8584128518117	67.25	0.30787	67.25	67.091	67.399	0					13	5	3	0	0	0	0.65093	1	24323	24323		19.362	3.2128	1	2187400	+		58642	20068	42784	43117	57189	57189					0.04045953551394632
VIGSLVARWL	10	Unmodified	_VIGSLVARWL_					0	0	0		ENSG00000178623|ENST00000407714|GPR35;nc|ENSG00000178623|Q9HC97-2|GPR35	ENSG00000178623|ENST00000407714|GPR35	ENSG00000178623|ENST00000407714|GPR35	MULTI-SECPEP	A375_MHC_IP_R2	2	557.7423095703125	2	557.342584	1112.67061	-0.71058	-0.00039604	0.090856	5.0638E-05	-0.61972	-0.0003454	557.342699745853	104.01	0.76167	104.77	104.45	105.21	0.76315					33	14	4	0	0	0	0.83425	1	39354	39354		22.736	0	1	5464000			58643	8170	42785	43118	57190	57190					0.11878588019317249
VIGTAEQGLR	10	Unmodified	_VIGTAEQGLR_					0	0	0			REV__nc|ENSG00000131473|P53396-3|ACLY	REV__nc|ENSG00000131473|P53396-3|ACLY	MULTI-MSMS	A375_MHC_IP_R1	1	522.6950073242188	2	522.29583	1042.57711	-0.30341	-0.00015847	0.055921	2.9207E-05	-0.24749	-0.00012926	522.2954732856377	127.95	1.5219	127.95	127.57	129.09	0					59	29	3	0	0	0	0.71653	1	49336	49336		4.897	1.6157	1	52604000	+		58644	27226	42786	43119	57191	57191					0.057522438462456194
VIGTPSSDVY	10	Unmodified	_VIGTPSSDVY_					0	0	0			REV__nc|ENSG00000168546|O00451-2|GFRA2	REV__nc|ENSG00000168546|O00451-2|GFRA2	MSMS	A375_MHC_IP_R1	1	519.21630859375	2	519.261122	1036.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.318	1	62.318	61.818	62.818	0								0	0	0	0.15105	1	22506	22506		15.847	0	1		+		58645	20866	42787	43120	57192	57192					-0.00910259893203147
VIGTQQLAQGP	11	Unmodified	_VIGTQQLAQGP_					0	0	0			REV__nc|ENSG00000095917|Q9BZJ3-2|TPSD1	REV__nc|ENSG00000095917|Q9BZJ3-2|TPSD1	MULTI-MSMS	A375_MHC_IP_R2	2	556.7073364257812	2	556.308938	1110.60332	-0.73384	-0.00040824	-0.22983	-0.00012785	-0.96367	-0.0005361	556.3075845840069	125.89	3.0847	126.18	125.47	128.56	0.2951					137	60	5	0	0	0	0.72728	1	49993	49993		11.495	0	1	30956000	+		58646	17002	42788	43121	57193	57193					0.0524451301771478
VIGYSALTEE	10	Unmodified	_VIGYSALTEE_					0	0	0			REV__ENSG00000100225|ENST00000266087|FBXO7	REV__ENSG00000100225|ENST00000266087|FBXO7	MULTI-MSMS	A375_MHC_IP_R1	1	542.6886596679688	2	541.274229	1080.53391	-0.65071	-0.00035221	-0.34104	-0.0001846	-0.99175	-0.00053681	541.2742389040744	60.998	0.76488	60.998	60.566	61.331	0					39	14	4	0	0	0	0.63639	1	22014	22014		18.146	1.2041	1	11574000	+		58647	17061	42789	43122	57194	57194					-0.0031399072172462184
VIHFNRLD	8	Unmodified	_VIHFNRLD_					0	0	0			REV__KCNJ6|p.S230F|1|0.28|ENSG00000157542|chr21:37714468-37714468|G/A|missense_variant	REV__KCNJ6|p.S230F|1|0.28|ENSG00000157542|chr21:37714468-37714468|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	507.6794738769531	2	507.279983	1012.54541	-0.85457	-0.00043351	0.17976	9.1186E-05	-0.67482	-0.00034232	507.279994264968	55.288	1.0675	56.039	55.473	56.54	0.75075					49	20	3	0	0	0	0.92636	1	20757	20757		16.942	16.942	1	13194000	+		58648	26828	42790	43123	57195	57195					0.03964295882940405
VIHFNRLD	8	Unmodified	_VIHFNRLD_					0	0	0			REV__KCNJ6|p.S230F|1|0.28|ENSG00000157542|chr21:37714468-37714468|G/A|missense_variant	REV__KCNJ6|p.S230F|1|0.28|ENSG00000157542|chr21:37714468-37714468|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	507.279983	1012.54541	-0.30459	-0.00015451	-0.22912	-0.00011623	-0.53371	-0.00027074	507.27982455575693	55.966	1.0662	55.966	55.482	56.548	0	-0.036551	-0.00021118	NaN	16.942	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12476000	+		58649	26828	42790	43123							0.03964295882940405
VIHFYLPY	8	Unmodified	_VIHFYLPY_					0	0	0			REV__ENST00000440835.6_1_12:71032156-71032375:-|nuORF	REV__ENST00000440835.6_1_12:71032156-71032375:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	526.6839599609375	2	526.284203	1050.55385	-0.51716	-0.00027217	-1.4482	-0.00076216	-1.9654	-0.0010343	526.2841992498854	91.504	2.2799	91.504	90.794	93.074	0					84	44	3	0	0	0	0.85371	1	33530	33530		32.454	0	1	3268000	+		58650	24802	42791	43124	57196	57196					0.030598497995470098
VIHQLNASLW	10	Unmodified	_VIHQLNASLW_					0	0	0		OTUD3|p.P158S|1|0.18|ENSG00000169914|chr1:19894469-19894469|C/T|missense_variant	OTUD3|p.P158S|1|0.18|ENSG00000169914|chr1:19894469-19894469|C/T|missense_variant	OTUD3|p.P158S|1|0.18|ENSG00000169914|chr1:19894469-19894469|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	394.62078857421875	3	394.220624	1179.64004	-0.13729	-5.4121E-05	0.1515	5.9726E-05	0.014218	5.605E-06	394.2206431018056	62.881	0.50406	63.624	63.383	63.888	0.74263					22	9	3	0	0	0	0.6806	1	23879	23879		17.443	2.1942	1	2584700			58651	15101	42792	43125	57197	57197					0.05740809634266952
VIHRLLLIW	9	Unmodified	_VIHRLLLIW_					0	0	0		ENST00000380588.4_1_21:41163939-41173276:+|nuORF	ENST00000380588.4_1_21:41163939-41173276:+|nuORF	ENST00000380588.4_1_21:41163939-41173276:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	582.3123779296875	2	581.876594	1161.73863	-0.1981	-0.00011527	3.3843	0.0019693	3.1862	0.001854	582.3819561097561	85.497	0.20473	86.233	86.085	86.29	0.73602					5	3	2	0	0	0	0.79683	1	32487	32487		5.2307	0	1	922740			58652	11352	42793	43126	57198	57198					0.16423457669998243
VIHSVFTNL	9	Unmodified	_VIHSVFTNL_					0	0	0		ENSG00000163982|ENST00000296358|OTOP1	ENSG00000163982|ENST00000296358|OTOP1	ENSG00000163982|ENST00000296358|OTOP1	MULTI-SECPEP	A375_MHC_IP_R1	1	515.7003784179688	2	515.290017	1028.56548	-0.52569	-0.00027088	0.4222	0.00021756	-0.10349	-5.3326E-05	515.2900952386719	52.348	0.81404	52.348	51.93	52.744	0					24	15	3	0	0	0	0.24548	1	18753	18753		52.268	0	1	2640300			58653	6757	42794	43127	57199	57199					0.05234046822897653
VIHTREKP	8	Unmodified	_VIHTREKP_					0	0	0		ENSG00000213793|ENST00000638862|ZNF888;ZNF681|p.G558R|1|0.07|ENSG00000196172|chr19:23743878-23743878|C/T|missense_variant;nc|ENSG00000197134|Q9Y2Q1-4|ZNF257;nc|ENSG00000197134|Q9Y2Q1-3|ZNF257;nc|ENSG00000197134|Q9Y2Q1-2|ZNF257;ENSG00000197134|ENST00000594947|ZNF257	ENSG00000213793|ENST00000638862|ZNF888	ENSG00000213793|ENST00000638862|ZNF888	MULTI-SECPEP	A375_MHC_IP_R1	1	979.1500854492188	1	979.56834	978.561064	0.52494	0.00051421	1.2719	0.0012459	1.7968	0.0017601	979.5729476819704	112.82	0.30549	112.82	112.59	112.89	0					8	5	2	0	0	0	0.972	1	41346	41346		7.9102	2.1497	1	3050200			58654	9583	42795	43128	57200	57200					0.07092582399991443
VIIASDKW	8	Unmodified	_VIIASDKW_					0	0	0			REV__tr|U7SW05|U7SW05_FUSNULipopolysaccharideexportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01409PE=4SV=1	REV__tr|U7SW05|U7SW05_FUSNULipopolysaccharideexportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01409PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	465.6212158203125	2	466.26601	930.517468	-1.0329	-0.00048162	-0.50323	-0.00023464	-1.5362	-0.00071626	466.26574775161987	56.581	0.45881	57.331	57.051	57.51	0.75015					12	8	2	0	0	0	0.95423	1	21320	21320		12.532	4.6214	1	1379100	+		58655	28599	42796	43129	57201	57201					0.04942972902847487
VIIASSYHTY	10	Unmodified	_VIIASSYHTY_					0	0	0			REV__nc|ENSG00000128815|Q6ZS81-5|WDFY4	REV__nc|ENSG00000128815|Q6ZS81-5|WDFY4	MULTI-MSMS	A375_MHC_IP_R1	1	577.908203125	2	577.298039	1152.58152	-0.20771	-0.00011991	-1.0215	-0.00058968	-1.2292	-0.00070959	577.2978763281552	91.663	0.60697	91.663	91.299	91.906	0					17	11	2	0	0	0	0.69306	1	33640	33640		13.906	0.86358	1	2448100	+		58656	18469	42797	43130	57202	57202					0.011337082691625255
VIIHDAVRP	9	Unmodified	_VIIHDAVRP_					0	0	0		nc|ENSG00000214960|A4D126-2|CRPPA;ENSG00000214960|ENST00000407010|CRPPA	nc|ENSG00000214960|A4D126-2|CRPPA	nc|ENSG00000214960|A4D126-2|CRPPA	MSMS	A375_MHC_IP_R1	1	510.2032470703125	2	510.303458	1018.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.61	1	118.61	118.11	119.11	0								0	0	0	0.15486	1	43730	43730		7.2892	0	1				58657	9633	42798	43131	57203	57203					0.08381155434085485
VIIKWIKN	8	Unmodified	_VIIKWIKN_					0	0	0			REV__tr|U7ST38|U7ST38_FUSNUCationtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01273PE=4SV=1	REV__tr|U7ST38|U7ST38_FUSNUCationtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01273PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	507.4383239746094	2	507.328945	1012.64334	-0.42526	-0.00021575	-2.6131	-0.0013257	-3.0384	-0.0015415	507.3268846529041	50.357	0.25502	50.357	50.153	50.408	0					5	4	2	0	0	0	0.77717	1	17804	17804		5.2307	0.47466	1	476540	+		58658	28458	42799	43132	57204	57204					0.13752104478942329
VIILHILY	8	Unmodified	_VIILHILY_					0	0	0		ENST00000264501.8_2_4:123274283-123275004:+|nuORF	ENST00000264501.8_2_4:123274283-123275004:+|nuORF	ENST00000264501.8_2_4:123274283-123275004:+|nuORF	MSMS	A375_MHC_IP_R1	1	492.3313293457031	2	492.318046	982.621539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.848	1	48.848	48.348	49.348	0								0	0	0	0.16876	1	17253	17253		6.3541	0	1				58659	10336	42800	43133	57205	57205					0.12953299730372692
VIILLGTKPV	10	Unmodified	_VIILLGTKPV_					0	0	0			REV__ENSG00000213401|ENST00000393869|MAGEA12	REV__ENSG00000213401|ENST00000393869|MAGEA12	MULTI-SECPEP	A375_MHC_IP_R2	2	1052.4278564453125	1	1052.70779	1051.70052	0.05452	5.7393E-05	1.6766	0.001765	1.7311	0.0018224	1053.712262619955	121.3	0.15074	121.75	121.67	121.82	0.44488					4	2	2	0	0	0	0.94311	1	46346	46346		0.45834	0	1	23490000	+		58660	15778	42801	43134	57206	57206					0.1767352696465423
VIIPNEKSL	9	Unmodified	_VIIPNEKSL_					0	0	0		ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	MULTI-MSMS	A375_MHC_IP_R1	1	506.69580078125	2	506.8055	1011.59645	-0.4582	-0.00023222	0.29459	0.0001493	-0.16361	-8.2917E-05	506.80541841694424	58.79	0.45884	58.79	58.531	58.99	0					12	8	2	0	0	0	0.53367	1	21090	21090		18.146	1.9972	1	806030			58661	2715	42802	43135	57207	57207					0.0911120013714708
VIISDNRKL	9	Unmodified	_VIISDNRKL_					0	0	0			REV__nc|ENSG00000135655|Q9Y4E8-2|USP15	REV__nc|ENSG00000135655|Q9Y4E8-2|USP15	MULTI-MSMS	A375_MHC_IP_R1	1	353.9504089355469	3	353.216991	1056.62914	-0.23535	-8.3129E-05	-1.1507	-0.00040643	-1.386	-0.00048956	353.5507200338388	27.78	0.45343	27.78	27.533	27.987	0					23	8	4	0	0	0	0.60982	1	8508	8508		14.405	1.5328	1	3595200	+		58662	18873	42803	43136	57208	57208					0.10309407260001535
VIIVHDVADIW	11	Unmodified	_VIIVHDVADIW_					0	0	0		CERS3|p.M235I|1|0.18|ENSG00000154227|chr15:100472957-100472957|C/T|missense_variant	CERS3|p.M235I|1|0.18|ENSG00000154227|chr15:100472957-100472957|C/T|missense_variant	CERS3|p.M235I|1|0.18|ENSG00000154227|chr15:100472957-100472957|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	427.97393798828125	3	427.239684	1278.69722	-0.27091	-0.00011574	0.027211	1.1626E-05	-0.2437	-0.00010412	427.23961438874016	94.471	0.71297	94.471	94.14	94.853	0					29	13	3	0	0	0	0.70766	1	34734	34734		14.957	5.1929	1	5495500			58663	365	42804	43137	57209	57209					0.0690223211997818
VIIVHDVADIW	11	Unmodified	_VIIVHDVADIW_					0	0	0		CERS3|p.M235I|1|0.18|ENSG00000154227|chr15:100472957-100472957|C/T|missense_variant	CERS3|p.M235I|1|0.18|ENSG00000154227|chr15:100472957-100472957|C/T|missense_variant	CERS3|p.M235I|1|0.18|ENSG00000154227|chr15:100472957-100472957|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	639.6842041015625	2	640.355888	1278.69722	-0.74776	-0.00047883	0.40704	0.00026065	-0.34072	-0.00021818	640.3562017544514	94.498	1.7249	94.498	93.991	95.716	0					57	33	4	0	0	0	0.98591	1	34739	34739		2.9952	2.9952	1	13904000			58664	365	42804	43137	57210	57210					0.0690223211997818
VIIVHDVADIW	11	Unmodified	_VIIVHDVADIW_					0	0	0		CERS3|p.M235I|1|0.18|ENSG00000154227|chr15:100472957-100472957|C/T|missense_variant	CERS3|p.M235I|1|0.18|ENSG00000154227|chr15:100472957-100472957|C/T|missense_variant	CERS3|p.M235I|1|0.18|ENSG00000154227|chr15:100472957-100472957|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	427.97381591796875	3	427.239684	1278.69722	-0.038936	-1.6635E-05	-0.57842	-0.00024712	-0.61735	-0.00026376	427.23932300467663	93.693	0.6582	94.437	94.16	94.818	0.74474					25	12	3	0	0	0	0.7279	1	35605	35605		10.899	1.1347	1	5669400			58665	365	42804	43137	57211	57211					0.0690223211997818
VIIVHDVADIW	11	Unmodified	_VIIVHDVADIW_					0	0	0		CERS3|p.M235I|1|0.18|ENSG00000154227|chr15:100472957-100472957|C/T|missense_variant	CERS3|p.M235I|1|0.18|ENSG00000154227|chr15:100472957-100472957|C/T|missense_variant	CERS3|p.M235I|1|0.18|ENSG00000154227|chr15:100472957-100472957|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	427.239684	1278.69722	-0.27091	-0.00011574	0.027211	1.1626E-05	-0.2437	-0.00010412	427.23961438874016	94.471	0.71297	94.471	94.14	94.853	0	0.016938	0.00037813	NaN	14.957	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5495500			58666	365	42804	43137							0.0690223211997818
VIIVHDVADIW	11	Unmodified	_VIIVHDVADIW_					0	0	0		CERS3|p.M235I|1|0.18|ENSG00000154227|chr15:100472957-100472957|C/T|missense_variant	CERS3|p.M235I|1|0.18|ENSG00000154227|chr15:100472957-100472957|C/T|missense_variant	CERS3|p.M235I|1|0.18|ENSG00000154227|chr15:100472957-100472957|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	427.239684	1278.69722	-0.038936	-1.6635E-05	-0.57842	-0.00024712	-0.61735	-0.00026376	427.23932300467663	93.693	0.6582	94.437	94.16	94.818	0.74474	-0.016938	-0.00039811	NaN	14.957	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5669400			58667	365	42804	43137							0.0690223211997818
VIKELDRLGR	10	Unmodified	_VIKELDRLGR_					0	0	0		tr|U7SSR0|U7SSR0_FUSNUResolvase/invertase-typerecombinasecatalyticdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01540PE=3SV=1	tr|U7SSR0|U7SSR0_FUSNUResolvase/invertase-typerecombinasecatalyticdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01540PE=3SV=1	tr|U7SSR0|U7SSR0_FUSNUResolvase/invertase-typerecombinasecatalyticdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01540PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	400.6469421386719	3	400.247062	1197.71936	-0.44519	-0.00017819	0.61326	0.00024546	0.16808	6.7272E-05	400.24720882811584	25.74	0.50627	25.74	25.511	26.017	0					15	9	2	0	0	0	0.70312	1	7595	7595		10.899	3.4219	1	4235100			58668	29644	42805	43138	57212	57212					0.12840456588378402
VIKIPKLAVM	10	Unmodified	_VIKIPKLAVM_					0	0	0			REV__ENSG00000179299|ENST00000381782|NSUN7	REV__ENSG00000179299|ENST00000381782|NSUN7	MSMS	A375_MHC_IP_R1	1	371.3531188964844	3	371.247234	1110.71987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.3099	1	5.3099	4.8099	5.8099	0								0	0	0	0.15642	1	1210	1210		0	0	1		+		58669	21554	42806	43139	57213	57213					0.16894159983894497
VIKKAIAIN	9	Unmodified	_VIKKAIAIN_					0	0	0			REV__tr|U7T2J4|U7T2J4_FUSNUPutativemRNAinterferaseYoeBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00725PE=3SV=1	REV__tr|U7T2J4|U7T2J4_FUSNUPutativemRNAinterferaseYoeBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00725PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	484.6763916015625	2	485.326402	968.638252	-0.16163	-7.8441E-05	-0.29714	-0.00014421	-0.45876	-0.00022265	485.3261464384427	56.103	0.3042	56.103	55.991	56.295	0					7	5	2	0	0	0	0.78798	1	20155	20155		7.2892	2.0586	1	783590	+		58670	28745	42807	43140	57214	57214					0.15267800616311433
VIKKLQTNSK	10	Unmodified	_VIKKLQTNSK_					0	0	0		ENST00000565135.1_1_14:52755809-52755905:+|nuORF	ENST00000565135.1_1_14:52755809-52755905:+|nuORF	ENST00000565135.1_1_14:52755809-52755905:+|nuORF	MSMS	A375_MHC_IP_R2	2	579.8637084960938	2	579.86388	1157.71321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.25842	1	0.72886	0.22886	1.2289	0.47044								0	0	0	0.15642	1	93	93		0	0	1				58671	13543	42808	43141	57215	57215					0.14065938356861807
VIKKNQVSI	9	Unmodified	_VIKKNQVSI_					0	0	0		DNAH2|p.M1682I|1|0.38|ENSG00000183914|chr17:7776877-7776877|G/A|missense_variant	DNAH2|p.M1682I|1|0.38|ENSG00000183914|chr17:7776877-7776877|G/A|missense_variant	DNAH2|p.M1682I|1|0.38|ENSG00000183914|chr17:7776877-7776877|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	515.2266235351562	2	514.826766	1027.63898	-0.71523	-0.00036822	0.36561	0.00018823	-0.34962	-0.00017999	514.8268788246467	90.399	0.66102	90.399	90.184	90.845	0					26	12	3	0	0	0	0.10969	1	33209	33209		57.471	0	1	5453700			58672	762	42809	43142	57216	57216					0.12626595265373908
VIKKNQVSI	9	Unmodified	_VIKKNQVSI_					0	0	0		DNAH2|p.M1682I|1|0.38|ENSG00000183914|chr17:7776877-7776877|G/A|missense_variant	DNAH2|p.M1682I|1|0.38|ENSG00000183914|chr17:7776877-7776877|G/A|missense_variant	DNAH2|p.M1682I|1|0.38|ENSG00000183914|chr17:7776877-7776877|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	515.20263671875	2	514.826766	1027.63898	-0.67811	-0.00034911	0.21699	0.00011171	-0.46112	-0.0002374	514.8267328687052	89.373	0.60435	90.105	89.786	90.391	0.7318					27	11	3	0	0	0	0.16229	1	33982	33982		48.346	6.5062	1	4787800			58673	762	42809	43142	57217	57217					0.12626595265373908
VIKLALLLFRK	11	Unmodified	_VIKLALLLFRK_					0	0	0			REV__ENST00000367385.8_1_1:198291412-198291499:+|nuORF	REV__ENST00000367385.8_1_1:198291412-198291499:+|nuORF	MSMS	A375_MHC_IP_R1	1	657.4362182617188	2	657.455208	1312.89586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.914	1	95.914	95.414	96.414	0								0	0	0	0.16353	1	35252	35252		0.35063	0	1		+		58674	23969	42810	43143	57218	57218					0.2519311748947075
VIKNFSLTKN	10	Unmodified	_VIKNFSLTKN_					0	0	0		ENSG00000177511|ENST00000324000|ST8SIA3	ENSG00000177511|ENST00000324000|ST8SIA3	ENSG00000177511|ENST00000324000|ST8SIA3	MSMS	A375_MHC_IP_R2	2	388.6219482421875	3	388.564279	1162.67101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.547	1	27.207	26.707	27.707	0.65992								0	0	0	0.15411	1	8981	8981		7.4771	1.2852	1				58675	8089	42811	43144	57219	57219					0.0961796294850501
VIKNGTII	8	Unmodified	_VIKNGTII_					0	0	0			REV__TMPRSS11B|p.G188R|1|0.2|ENSG00000185873|chr4:68231327-68231327|C/T|missense_variant	REV__TMPRSS11B|p.G188R|1|0.2|ENSG00000185873|chr4:68231327-68231327|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	429.2714538574219	2	429.276378	856.538203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.091	1	55.842	55.342	56.342	0.75075								0	0	0	0.14677	1	20805	20805		49.669	0	1		+		58676	21927	42812	43145	57220	57220					0.1041956328251672
VIKPNSNP	8	Unmodified	_VIKPNSNP_					0	0	0			REV__ENSG00000115840|ENST00000422440|SLC25A12	REV__ENSG00000115840|ENST00000422440|SLC25A12	MULTI-MSMS	A375_MHC_IP_R1	1	435.6759033203125	2	434.747985	867.481417	-0.49337	-0.00021449	0.44366	0.00019288	-0.049712	-2.1612E-05	434.7481936953721	26.191	0.50738	26.191	26.068	26.575	0					14	9	3	0	0	0	0.77603	1	7724	7724		9.3474	3.587	1	3170600	+		58677	17917	42813	43146	57221	57221					0.0423751572599258
VIKRRPPFK	9	Unmodified	_VIKRRPPFK_					0	0	0		ENST00000225873.8_2_17:33905416-33905620:-|nuORF	ENST00000225873.8_2_17:33905416-33905620:-|nuORF	ENST00000225873.8_2_17:33905416-33905620:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	381.31689453125	3	380.916987	1139.72913	-0.088262	-3.3621E-05	0.17203	6.553E-05	0.08377	3.1909E-05	380.91695478395445	44.571	0.3543	45.34	45.138	45.492	0.76909					14	6	3	0	0	0	0.64971	1	16639	16639		11.495	11.495	1	2639900			58678	10119	42814	43147	57222	57222					0.16485689384444413
VIKRRPPFK	9	Unmodified	_VIKRRPPFK_					0	0	0		ENST00000225873.8_2_17:33905416-33905620:-|nuORF	ENST00000225873.8_2_17:33905416-33905620:-|nuORF	ENST00000225873.8_2_17:33905416-33905620:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	380.916987	1139.72913	0.53985	0.00020564	-0.004833	-1.841E-06	0.53501	0.0002038	380.9169934305927	45.662	0.55747	45.662	45.434	45.992	0	0.16108	-0.00010645	NaN	11.495	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5197900			58679	10119	42814	43147							0.16485689384444413
VILAKEKV	8	Unmodified	_VILAKEKV_					0	0	0			REV__ENSG00000102401|ENST00000471229|ARMCX3	REV__ENSG00000102401|ENST00000471229|ARMCX3	MULTI-SECPEP	A375_MHC_IP_R1	1	450.69970703125	2	450.299853	898.585153	0.43146	0.00019429	-0.64503	-0.00029046	-0.21357	-9.6172E-05	450.29953448374374	44.951	0.40419	44.951	44.676	45.081	0					13	7	3	0	0	0	0.88903	1	15709	15709		18.146	0	1	4018400	+		58680	17221	42815	43148	57223	57223					0.13180422833659122
VILDPADPTW	10	Unmodified	_VILDPADPTW_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-SECPEP	A375_MHC_IP_R2	2	564.1802368164062	2	563.792589	1125.57063	-0.9524	-0.00053696	0.42511	0.00023967	-0.52729	-0.00029728	563.7924650165389	56.865	0.45705	57.615	57.306	57.763	0.75015					14	8	2	0	0	0	0.85226	1	21535	21535		20.454	5.2051	1	1459400			58681	2985	42816	43149	57224	57224					0.012863058948369144
VILDPVHSV	9	Unmodified	_VILDPVHSV_					0	0	0		nc|ENSG00000224831|Q1AE95|TMEM183BP;ENSG00000163444|ENST00000367242|TMEM183A	nc|ENSG00000224831|Q1AE95|TMEM183BP	nc|ENSG00000224831|Q1AE95|TMEM183BP	MULTI-MSMS	A375_MHC_IP_R1	1	490.1847839355469	2	489.784567	977.554582	-0.45485	-0.00022278	0.35705	0.00017488	-0.097794	-4.7898E-05	489.7848247645603	65.945	0.70958	65.945	65.768	66.478	0					19	13	2	0	0	0	0.11296	2	23907	23907;23920		48.346	12.219	1	1997400			58682	6663	42817	43150	57225;57226	57225					0.06490644448615512
VILDRADSYI	10	Unmodified	_VILDRADSYI_					0	0	0		tr|U7SIQ6|U7SIQ6_FUSNUtRNAuridine5-carboxymethylaminomethylmodificationenzymeMnmGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmGPE=3SV=1	tr|U7SIQ6|U7SIQ6_FUSNUtRNAuridine5-carboxymethylaminomethylmodificationenzymeMnmGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmGPE=3SV=1	tr|U7SIQ6|U7SIQ6_FUSNUtRNAuridine5-carboxymethylaminomethylmodificationenzymeMnmGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmGPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	582.60888671875	2	582.816596	1163.61864	-0.16453	-9.5888E-05	1.0503	0.00061214	0.8858	0.00051626	582.8168624146335	72.889	0.25238	72.889	72.779	73.031	0					6	4	2	0	0	0	0.9267	1	26525	26525		15.248	5.0979	1	1337100			58683	29430	42818	43151	57227	57227					0.04337379814887754
VILEPQPAPV	10	Unmodified	_VILEPQPAPV_					0	0	0			REV__ENST00000565717.5_1_16:2257086-2257920:+|nuORF	REV__ENST00000565717.5_1_16:2257086-2257920:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	532.1591796875	2	531.813325	1061.6121	-0.77735	-0.0004134	0.93691	0.00049826	0.15956	8.4855E-05	531.8139405079379	80.547	0.50699	80.547	80.441	80.948	0					13	9	2	0	0	0	0.63381	1	29499	29499		24.991	10.409	1	2121000	+		58684	26235	42819	43152	57228	57228					0.08375486654176711
VILFKGISL	9	Unmodified	_VILFKGISL_					0	0	0		NFIX|p.P141S|1|0.23|ENSG00000008441|chr19:13025414-13025414|C/T|missense_variant	NFIX|p.P141S|1|0.23|ENSG00000008441|chr19:13025414-13025414|C/T|missense_variant	NFIX|p.P141S|1|0.23|ENSG00000008441|chr19:13025414-13025414|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	494.8173828125	2	495.323328	988.632104	-0.39782	-0.00019705	0.12451	6.1675E-05	-0.2733	-0.00013537	495.3232796226398	83.845	0.81783	84.585	84.458	85.276	0.73962					25	15	2	0	0	0	0.53748	1	31985	31985		18.146	0	1	1598500			58685	14991	42820	43153	57229	57229					0.13733282384816903
VILISYLLIIK	11	Unmodified	_VILISYLLIIK_					0	0	0		ENSG00000172377|ENST00000641439|OR9I1	ENSG00000172377|ENST00000641439|OR9I1	ENSG00000172377|ENST00000641439|OR9I1	MSMS	A375_MHC_IP_R1	1	644.4791870117188	2	644.43615	1286.85775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.925	1	20.925	20.425	21.425	0								0	0	0	0.1636	1	5435	5435		0	0	1				58686	7704	42821	43154	57230	57230					0.22579186784173544
VILKIKGRH	9	Unmodified	_VILKIKGRH_					0	0	0		ENST00000379303.9_1_X:23726050-23731270:-|nuORF	ENST00000379303.9_1_X:23726050-23731270:-|nuORF	ENST00000379303.9_1_X:23726050-23731270:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1063.2677001953125	1	1063.70986	1062.70258	0.11665	0.00012408	0.20699	0.00022017	0.32363	0.00034425	1064.7121103607722	118.96	0.80956	118.96	118.52	119.33	0					21	15	2	0	0	0	0.79683	1	43685	43685		0.6015	0	1	22591000			58687	11330	42822	43155	57231	57231					0.17374000493123276
VILKKKKKLLL	11	Unmodified	_VILKKKKKLLL_					0	0	0		ENSG00000198929|ENST00000361897|NOS1AP	ENSG00000198929|ENST00000361897|NOS1AP	ENSG00000198929|ENST00000361897|NOS1AP	MSMS	A375_MHC_IP_R2	2	662.7342529296875	2	662.494333	1322.97411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.607	1	82.35	81.85	82.85	0.74293								0	0	0	0.16331	1	30995	30995		1.4819	1.4819	1				58688	9374	42823	43156	57232	57232					0.3255455007474666
VILLVTVVLFA	11	Unmodified	_VILLVTVVLFA_					0	0	0		ENSG00000113361|ENST00000265071|CDH6	ENSG00000113361|ENST00000265071|CDH6	ENSG00000113361|ENST00000265071|CDH6	MSMS	A375_MHC_IP_R1	1	396.16455078125	3	396.265171	1185.77368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.736	1	52.736	52.236	53.236	0								0	0	0	0.1635	1	18770	18770		0.50596	0	1				58689	3144	42824	43157	57233	57233					0.18822655687290535
VILMFYVP	8	Unmodified	_VILMFYVP_					0	0	0		ENSG00000255307|ENST00000530810|OR52B2	ENSG00000255307|ENST00000530810|OR52B2	ENSG00000255307|ENST00000530810|OR52B2	MULTI-SECPEP	A375_MHC_IP_R2	2	490.7364196777344	2	491.277532	980.540511	-0.34374	-0.00016887	-0.23937	-0.0001176	-0.58311	-0.00028647	491.2772827490121	111.36	0.76994	112.1	111.8	112.57	0.73692					26	14	3	0	0	0	0.972	1	41968	41968		2.8892	0	1	1075000			58690	9889	42825	43158	57234	57234					0.04946275695965596
VILNMVMGL	9	Unmodified	_VILNMVMGL_					0	0	0		ENST00000394339.2_1_4:124320859-124322718:+|nuORF	ENST00000394339.2_1_4:124320859-124322718:+|nuORF	ENST00000394339.2_1_4:124320859-124322718:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	494.8741760253906	2	495.279749	988.544945	-0.32271	-0.00015983	-0.80963	-0.000401	-1.1323	-0.00056083	495.27912252255527	86.359	0.61273	87.092	86.794	87.407	0.73301					15	11	2	0	0	0	0.67221	1	32735	32735		19.439	4.8573	1	905970			58691	11450	42826	43159	57235	57235					0.050214168472393794
VILPGAKI	8	Unmodified	_VILPGAKI_					0	0	0		nc|ENSG00000112701|Q9GZR1-2|SENP6;ENSG00000112701|ENST00000447266|SENP6	nc|ENSG00000112701|Q9GZR1-2|SENP6	nc|ENSG00000112701|Q9GZR1-2|SENP6	MULTI-SECPEP	A375_MHC_IP_R2	2	405.612060546875	2	405.776014	809.537475	-0.06906	-2.8023E-05	0.21789	8.8416E-05	0.14883	6.0393E-05	405.7759897457398	44.596	0.30358	45.365	45.188	45.492	0.7691					7	5	2	0	0	0	0.93416	1	16683	16683		14.582	4.3983	1	965760			58692	3105	42827	43160	57236	57236					0.125087686334723
VILPPHLEKI	10	Unmodified	_VILPPHLEKI_					0	0	0		nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-3|RYR3;RYR3|p.D3926Vfs*56|1|0.44|ENSG00000198838|chr15:33837756-33837757|-/TT|frameshift_variant;RYR3|p.I2442Ffs*32|1|0.31|ENSG00000198838|chr15:33731593-33731594|-/TTTTTTGAACTAAAACTCTC|frameshift_variant	nc|ENSG00000198838|Q15413-2|RYR3	nc|ENSG00000198838|Q15413-2|RYR3	MSMS	A375_MHC_IP_R1	1	386.9555969238281	3	386.91302	1157.71723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.006	1	48.006	47.506	48.506	0								0	0	0	0.15372	1	16910	16910		5.0475	0	1				58693	9343	42828	43161	57237	57237					0.14468027850602994
VILPTVHEV	9	Unmodified	_VILPTVHEV_					0	0	0		ENST00000487662.1_1_3:57643405-57651906:-|nuORF;ENSG00000174839|ENST00000311128|DENND6A	ENST00000487662.1_1_3:57643405-57651906:-|nuORF	ENST00000487662.1_1_3:57643405-57651906:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	504.199951171875	2	503.800217	1005.58588	-0.65862	-0.00033181	0.30005	0.00015116	-0.35857	-0.00018065	503.80033116849165	68.336	1.6743	68.336	67.854	69.529	0					83	32	5	0	0	0	0.07754	1	24699	24699		54.774	20.671	1	125330000			58694	7906	42829	43162	57238	57238					0.08331217482714237
VILPTVHEV	9	Unmodified	_VILPTVHEV_					0	0	0		ENST00000487662.1_1_3:57643405-57651906:-|nuORF;ENSG00000174839|ENST00000311128|DENND6A	ENST00000487662.1_1_3:57643405-57651906:-|nuORF	ENST00000487662.1_1_3:57643405-57651906:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	503.1629333496094	2	503.800217	1005.58588	0.023182	1.1679E-05	-0.44437	-0.00022387	-0.42119	-0.0002122	503.79994773404366	69.709	0.60625	69.709	69.529	70.135	0					15	11	2	0	0	0	0.62767	1	25390	25390		16.942	4.4107	1	801370			58695	7906	42829	43162	57239	57239					0.08331217482714237
VILPTVHEV	9	Unmodified	_VILPTVHEV_					0	0	0		ENST00000487662.1_1_3:57643405-57651906:-|nuORF;ENSG00000174839|ENST00000311128|DENND6A	ENST00000487662.1_1_3:57643405-57651906:-|nuORF	ENST00000487662.1_1_3:57643405-57651906:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1997375488281	2	503.800217	1005.58588	-0.65043	-0.00032769	-0.17894	-9.0152E-05	-0.82938	-0.00041784	503.8000768367	67.444	2.183	68.18	67.698	69.881	0.73631					92	42	6	0	0	0	0.050875	1	25492	25492		64.236	30.134	1	153690000			58696	7906	42829	43162	57240	57240					0.08331217482714237
VILQFTQRFTK	11	Unmodified	_VILQFTQRFTK_					0	0	0			REV__ZNF852|p.S200F|1|0.67|ENSG00000178917|chr3:44500178-44500178|G/A|missense_variant	REV__ZNF852|p.S200F|1|0.67|ENSG00000178917|chr3:44500178-44500178|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	461.00439453125	3	460.938117	1379.79252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.73	1	136.73	136.23	137.23	0								0	0	0	0.16309	1	52656	52656		2.6312	0.37851	1		+		58697	29057	42830	43163	57241	57241					0.11781585311018716
VILSDGDGTV	10	Unmodified	_VILSDGDGTV_					0	0	0		ENSG00000171302|ENST00000392446|CANT1;nc|ENSG00000171302|Q8WVQ1-3|CANT1;nc|ENSG00000171302|Q8WVQ1-2|CANT1	ENSG00000171302|ENST00000392446|CANT1	ENSG00000171302|ENST00000392446|CANT1	MULTI-MSMS	A375_MHC_IP_R2	2	488.15057373046875	2	488.253297	974.492041	-0.59906	-0.00029249	-0.41605	-0.00020314	-1.0151	-0.00049563	488.2531681604738	80.357	1.3231	81.102	80.657	81.981	0.74474					31	25	2	0	0	0	0.58828	1	30768	30768		21.747	3.6117	1	5183300			58698	7592	42831	43164	57242	57242					0.0037745358978327204
VILSEIKEA	9	Unmodified	_VILSEIKEA_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF;ENST00000563484.1_1_16:89971421-89975542:+|nuORF;ENST00000570217.1_1_16:89972581-89984411:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-SECPEP	A375_MHC_IP_R1	1	501.6846923828125	2	501.297507	1000.58046	-0.5265	-0.00026393	0.13215	6.6245E-05	-0.39435	-0.00019769	501.29727322521234	53.174	0.6069	53.174	52.847	53.453	0					17	11	2	0	0	0	0.41434	1	18899	18899		39.95	14.55	1	2207600			58699	5206	42832	43165	57243	57243					0.08019493900235375
VILSEIKEA	9	Unmodified	_VILSEIKEA_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF;ENST00000563484.1_1_16:89971421-89975542:+|nuORF;ENST00000570217.1_1_16:89972581-89984411:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-SECPEP	A375_MHC_IP_R2	2	501.68438720703125	2	501.297507	1000.58046	-0.99316	-0.00049787	0.42528	0.00021319	-0.56788	-0.00028468	501.2974910150127	52.298	0.45345	53.05	52.831	53.285	0.75225					15	8	3	0	0	0	0.37663	1	19679	19679		43.772	7.6454	1	2134300			58700	5206	42832	43165	57244	57244					0.08019493900235375
VILSNKLTRHR	11	Unmodified	_VILSNKLTRHR_					0	0	0			REV__ENSG00000183671|ENST00000621141|CMKLR2	REV__ENSG00000183671|ENST00000621141|CMKLR2	MULTI-MSMS	A375_MHC_IP_R2	2	446.67822265625	3	446.277244	1335.8099	-0.33234	-0.00014832	1.6279	0.00072651	1.2956	0.00057819	446.2775984531725	83.406	1.2154	84.146	83.344	84.559	0.73962					36	23	3	0	0	0	0.73111	1	31697	31697		7.846	0.80896	1	4952100	+		58701	21768	42833	43166	57245	57245					0.1554292563666877
VIMADEMDY	9	Unmodified	_VIMADEMDY_					0	0	0			REV__nc|ENSG00000125630|Q9H9Y6-4|POLR1B	REV__nc|ENSG00000125630|Q9H9Y6-4|POLR1B	MULTI-MSMS	A375_MHC_IP_R2	2	544.1818237304688	2	543.727743	1085.44093	-1.1379	-0.00061868	0.92467	0.00050277	-0.21318	-0.00011591	543.7282281379055	57.577	0.40771	58.326	58.12	58.528	0.74894					13	7	2	0	0	0	0.68216	2	21795	21795;21842		8.5933	1.304	1	1097100	+		58702	18352	42834	43167	57246;57247	57246					-0.09836954770958073
VIMADEMDY	9	Unmodified	_VIMADEMDY_					0	0	0			REV__nc|ENSG00000125630|Q9H9Y6-4|POLR1B	REV__nc|ENSG00000125630|Q9H9Y6-4|POLR1B	MULTI-MATCH	A375_MHC_IP_R1	1		2	543.727743	1085.44093	-0.62164	-0.000338	0.45278	0.00024619	-0.16886	-9.1814E-05	543.7278638286831	58.203	0.50665	58.203	57.923	58.43	0	-0.061442	-0.00032651	NaN	8.5933	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1623000	+		58703	18352	42834	43167							-0.09836954770958073
VIMDKTQTI	9	Unmodified	_VIMDKTQTI_					0	0	0			REV__tr|U7SNJ4|U7SNJ4_FUSNUABMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02011PE=4SV=1	REV__tr|U7SNJ4|U7SNJ4_FUSNUABMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02011PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6257934570312	2	524.788992	1047.56343	-0.40711	-0.00021365	-0.39322	-0.00020636	-0.80032	-0.00042	524.7885161625319	55.925	0.50796	55.925	55.635	56.143	0					12	9	2	0	0	0	0.28216	1	20014	20014		49.933	0	1	1894500	+		58704	28332	42835	43168	57248	57248					0.04155250022790824
VIMDNDSTYSS	11	Unmodified	_VIMDNDSTYSS_					0	0	0			REV__ENSG00000181698|ENST00000641665|OR5T1	REV__ENSG00000181698|ENST00000641665|OR5T1	MSMS	A375_MHC_IP_R2	2	616.2702026367188	2	616.260993	1230.50743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.37	1	134.51	134.01	135.01	0.13901								0	0	0	0.16179	1	52860	52860		9.3831	2.66	1		+		58705	21662	42836	43169	57249	57249					-0.09860047675329042
VIMLACFTL	9	Unmodified	_VIMLACFTL_					0	0	0			REV__ENSG00000197296|ENST00000396825|FITM2	REV__ENSG00000197296|ENST00000396825|FITM2	MSMS	A375_MHC_IP_R1	1	505.6728515625	2	505.774299	1009.53405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.354	1	88.354	87.854	88.854	0								0	0	0	0.1521	1	32433	32433		18.135	1.0484	1		+		58706	22276	42837	43170	57250	57250					0.029660144729518834
VINDECYQV	9	Unmodified	_VINDECYQV_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-SECPEP	A375_MHC_IP_R1	1	1082.88134765625	1	1082.48229	1081.47501	0.12512	0.00013544	-0.65163	-0.00070538	-0.52651	-0.00056994	1082.4816403852144	61.661	1.3298	61.661	61.227	62.557	0					50	25	3	0	0	0	0.013591	1	22418	22418		118.07	78.111	1	7743700			58707	3744	42838	43171	57251	57251					-0.06246790287696058
VINDECYQV	9	Unmodified	_VINDECYQV_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-SECPEP	A375_MHC_IP_R2	2	1083.232666015625	1	1082.48229	1081.47501	-0.21915	-0.00023722	-0.44551	-0.00048225	-0.66465	-0.00071948	1082.4818413490048	60.956	1.5138	61.701	61.414	62.928	0.74503					52	29	3	0	0	0	0.011107	1	23055	23055		134.3	85.95	1	8091400			58708	3744	42838	43171	57252	57252					-0.06246790287696058
VINDVRDIFL	10	Unmodified	_VINDVRDIFL_					0	0	0		ENSG00000165417|ENST00000553612|GTF2A1	ENSG00000165417|ENST00000553612|GTF2A1	ENSG00000165417|ENST00000553612|GTF2A1	MULTI-SECPEP	A375_MHC_IP_R1	1	602.7416381835938	2	602.340238	1202.66592	-0.17238	-0.00010383	0.16276	9.8037E-05	-0.0096171	-5.7928E-06	602.3404574845604	106.6	0.50966	106.6	106.42	106.93	0					13	9	2	0	0	0	0.43685	1	39156	39156		64.927	32.141	1	1620600			58709	6950	42839	43172	57253	57253					0.07269659085886815
VINDVRDIFL	10	Unmodified	_VINDVRDIFL_					0	0	0		ENSG00000165417|ENST00000553612|GTF2A1	ENSG00000165417|ENST00000553612|GTF2A1	ENSG00000165417|ENST00000553612|GTF2A1	MULTI-MATCH	A375_MHC_IP_R2	2		2	602.340238	1202.66592	-0.47748	-0.00028761	0.38568	0.00023231	-0.091796	-5.5293E-05	602.3404514292283	105.84	0.30682	106.6	106.42	106.73	0.75977	0.00090757	9.2175E-05	NaN	64.927	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2211200			58710	6950	42839	43172							0.07269659085886815
VINFKIIV	8	Unmodified	_VINFKIIV_					0	0	0		ADGRB3|p.S785F|1|0.16|ENSG00000135298|chr6:69062954-69062954|C/T|missense_variant	ADGRB3|p.S785F|1|0.16|ENSG00000135298|chr6:69062954-69062954|C/T|missense_variant	ADGRB3|p.S785F|1|0.16|ENSG00000135298|chr6:69062954-69062954|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	473.70965576171875	2	473.310221	944.605889	-1.0875	-0.00051472	0.21694	0.00010268	-0.87055	-0.00041204	473.31025823224263	53.576	0.40858	54.327	54.046	54.454	0.75105					9	7	2	0	0	0	0.972	1	20262	20262		2.8892	0	1	1586700			58711	68	42840	43173	57254	57254					0.1313701321332701
VINFKKTQK	9	Unmodified	_VINFKKTQK_					0	0	0		ENSG00000082438|ENST00000652658|COBLL1;nc|ENSG00000082438|Q53SF7-3|COBLL1;nc|ENSG00000082438|Q53SF7-2|COBLL1	ENSG00000082438|ENST00000652658|COBLL1	ENSG00000082438|ENST00000652658|COBLL1	MULTI-SECPEP	A375_MHC_IP_R1	1	369.94140625	3	369.229119	1104.66553	0.16201	5.9817E-05	-0.7878	-0.00029088	-0.6258	-0.00023106	369.22873225636533	25.617	0.71052	25.617	25.357	26.068	0					20	12	2	0	0	0	0.67483	1	7677	7677		3.8763	0	1	10640000			58712	1758	42841	43174	57255	57255					0.11738284156695045
VINFSQEEW	9	Unmodified	_VINFSQEEW_					0	0	0		ENST00000334116.7_2_19:37042871-37064163:-|nuORF;ENSG00000186020|ENST00000591340|ZNF529	ENST00000334116.7_2_19:37042871-37064163:-|nuORF	ENST00000334116.7_2_19:37042871-37064163:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	576.6720581054688	2	576.272021	1150.52949	-0.02188	-1.2609E-05	0.53318	0.00030725	0.5113	0.00029465	576.27204133476	86.324	0.6636	87.057	86.794	87.458	0.733					17	12	2	0	0	0	0.4867	1	32887	32887		20.454	0.039092	1	1268900			58713	8716	42842	43175	57256	57256					-0.03975455144609441
VINGDKLVI	9	Unmodified	_VINGDKLVI_					0	0	0			REV__tr|U7T2K5|U7T2K5_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00606PE=3SV=1	REV__tr|U7T2K5|U7T2K5_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00606PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	486.2001647949219	2	485.800217	969.585882	-0.51863	-0.00025195	-0.088211	-4.2853E-05	-0.60684	-0.0002948	485.80020576326643	87.661	0.55591	88.392	88.116	88.671	0.7318					13	10	2	0	0	0	0.14572	1	33376	33376		62.573	7.7991	1	1815900	+		58714	28748	42843	43176	57257	57257					0.09987217482705546
VINGYVLID	9	Unmodified	_VINGYVLID_					0	0	0			REV__ENSG00000175895|ENST00000315367|PLEKHF2	REV__ENSG00000175895|ENST00000315367|PLEKHF2	MULTI-MSMS	A375_MHC_IP_R2	2	503.2141418457031	2	503.2844	1004.55425	-0.62927	-0.0003167	-1.2471	-0.00062764	-1.8764	-0.00094434	503.2829004596388	131.58	0.40598	131.77	131.65	132.05	0.18953					10	7	2	0	0	0	0.64808	1	51800	51800		11.64	3.7301	1	4836900	+		58715	21372	42844	43177	57258	57258					0.0521522472874949
VINNLRSVQP	10	Unmodified	_VINNLRSVQP_					0	0	0			REV__BCL6|p.A443V|1|0.38|ENSG00000113916|chr3:187729077-187729077|G/A|missense_variant	REV__BCL6|p.A443V|1|0.38|ENSG00000113916|chr3:187729077-187729077|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	570.729736328125	2	570.330205	1138.64586	-0.11839	-6.752E-05	-0.43994	-0.00025091	-0.55832	-0.00031843	570.3297118951914	149.65	0.95453	149.67	149.06	150.01	0.01825					85	46	3	0	0	0	0.72416	1	58028	58028		1.4819	0	1	125550	+		58716	15505	42845	43178	57259	57259					0.08207908145936926
VINNTQRVL	9	Unmodified	_VINNTQRVL_					0	0	0		ENSG00000128294|ENST00000338754|TPST2	ENSG00000128294|ENST00000338754|TPST2	ENSG00000128294|ENST00000338754|TPST2	MULTI-SECPEP	A375_MHC_IP_R2	2	529.2111206054688	2	528.811648	1055.60874	-0.49553	-0.00026204	-0.2179	-0.00011523	-0.71343	-0.00037727	528.8114471100689	41.959	0.40833	42.734	42.504	42.913	0.77451					13	7	2	0	0	0	0.67483	1	15619	15619		14.838	0.93222	1	4394000			58717	4130	42846	43179	57260	57260					0.08316236600194316
VINRERKKKT	10	Unmodified	_VINRERKKKT_					0	0	0		ENST00000454219.1_1_1:100434901-100435171:-|nuORF	ENST00000454219.1_1_1:100434901-100435171:-|nuORF	ENST00000454219.1_1_1:100434901-100435171:-|nuORF	MSMS	A375_MHC_IP_R1	1	636.46142578125	2	636.398953	1270.78335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.57	1	146.57	146.07	147.07	0								0	0	0	0.15631	1	56067	56067		0.35063	0	1				58718	12108	42847	43180	57261	57261					0.15879236745331582
VINSNRNWD	9	Unmodified	_VINSNRNWD_					0	0	0		CNTN3|p.P89S|1|0.47|ENSG00000113805|chr3:74486549-74486549|G/A|missense_variant	CNTN3|p.P89S|1|0.47|ENSG00000113805|chr3:74486549-74486549|G/A|missense_variant	CNTN3|p.P89S|1|0.47|ENSG00000113805|chr3:74486549-74486549|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	559.171875	2	559.272887	1116.53122	-0.40049	-0.00022399	1.0971	0.00061361	0.69666	0.00038962	559.2734484600516	51.948	0.45795	51.948	51.829	52.287	0					10	8	2	0	0	0	0.51106	1	18485	18485		19.257	4.6753	1	1354600			58719	551	42848	43181	57262	57262					-0.0223840133601243
VIPERPVVV	9	Unmodified	_VIPERPVVV_					0	0	0		ENSG00000178814|ENST00000618853|OPLAH	ENSG00000178814|ENST00000618853|OPLAH	ENSG00000178814|ENST00000618853|OPLAH	MULTI-MSMS	A375_MHC_IP_R1	1	504.892822265625	2	504.316035	1006.61752	-0.57843	-0.00029171	0.74044	0.00037341	0.16201	8.1703E-05	504.3161438324133	85.504	0.55814	85.504	85.261	85.819	0					18	10	3	0	0	0	0.71416	1	31406	31406		5.7319	0.97584	1	1519100			58720	8180	42849	43182	57263	57263					0.11447210236656247
VIPERPVVV	9	Unmodified	_VIPERPVVV_					0	0	0		ENSG00000178814|ENST00000618853|OPLAH	ENSG00000178814|ENST00000618853|OPLAH	ENSG00000178814|ENST00000618853|OPLAH	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	504.316035	1006.61752	-0.57843	-0.00029171	0.74044	0.00037341	0.16201	8.1703E-05	504.3161438324133	85.504	0.55814	85.504	85.261	85.819	0	0.17533	7.1934E-05	NaN	5.7319	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1519100			58721	8180	42849	43182							0.11447210236656247
VIPLIPRASI	10	Unmodified	_VIPLIPRASI_					0	0	0		ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D	ENSG00000167548|ENST00000301067|KMT2D	ENSG00000167548|ENST00000301067|KMT2D	MSMS	A375_MHC_IP_R2	2	360.2744445800781	3	360.237615	1077.69102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.835	1	68.571	68.071	69.071	0.73511								0	0	0	0.15451	1	25706	25706		6.1918	2.0023	1				58722	7193	42850	43183	57264	57264					0.15527758679127146
VIPNMVPPF	9	Unmodified	_VIPNMVPPF_					0	0	0			REV__OR51G2|p.L287F|1|0.29|ENSG00000176893|chr11:4914805-4914805|G/A|missense_variant	REV__OR51G2|p.L287F|1|0.29|ENSG00000176893|chr11:4914805-4914805|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	507.1340637207031	2	507.278063	1012.54157	-0.39582	-0.00020079	0.91933	0.00046636	0.52352	0.00026557	507.27898531647264	73.919	0.35455	73.919	73.792	74.146	0					8	6	2	0	0	0	0.69504	1	26933	26933		4.3292	0	1	460970	+		58723	21425	42851	43184	57265	57265					0.035804900648713556
VIPRGNVL	8	Unmodified	_VIPRGNVL_					0	0	0		ENST00000440465.1_1_10:36811746-36813066:-|nuORF;ENSG00000105835|ENST00000222553|NAMPT;ENST00000393618.5_1_7:105910735-105925330:-|nuORF;ENST00000489358.5_1_7:105912543-105925330:-|nuORF;ENST00000486949.5_1_7:105912936-105925330:-|nuORF;ENST00000491027.5_1_7:105903822-105925330:-|nuORF	ENST00000440465.1_1_10:36811746-36813066:-|nuORF	ENST00000440465.1_1_10:36811746-36813066:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	434.6742248535156	2	434.27417	866.533787	0.00038288	1.6628E-07	-0.13234	-5.7474E-05	-0.13196	-5.7308E-05	434.27406576455195	42.612	0.55565	42.612	42.336	42.891	0					15	10	2	0	0	0	0.75322	1	14812	14812		19.439	0	1	2009200			58724	2641	42852	43185	57266	57266					0.09518098859598467
VIPRGNVL	8	Unmodified	_VIPRGNVL_					0	0	0		ENST00000440465.1_1_10:36811746-36813066:-|nuORF;ENSG00000105835|ENST00000222553|NAMPT;ENST00000393618.5_1_7:105910735-105925330:-|nuORF;ENST00000489358.5_1_7:105912543-105925330:-|nuORF;ENST00000486949.5_1_7:105912936-105925330:-|nuORF;ENST00000491027.5_1_7:105903822-105925330:-|nuORF	ENST00000440465.1_1_10:36811746-36813066:-|nuORF	ENST00000440465.1_1_10:36811746-36813066:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	434.27417	866.533787	0.00038288	1.6628E-07	-0.13234	-5.7474E-05	-0.13196	-5.7308E-05	434.27406576455195	42.612	0.55565	42.612	42.336	42.891	0	0.12579	-6.7401E-05	NaN	19.439	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2009200			58725	2641	42852	43185							0.09518098859598467
VIQRFPELRRR	11	Unmodified	_VIQRFPELRRR_					0	0	0		ENST00000264657.9_1_17:40500547-40540577:-|nuORF	ENST00000264657.9_1_17:40500547-40540577:-|nuORF	ENST00000264657.9_1_17:40500547-40540577:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	735.8438110351562	2	735.444226	1468.8739	-0.63367	-0.00046603	-0.33671	-0.00024763	-0.97038	-0.00071366	735.4435258013463	148.99	2.0797	149.01	147.81	149.89	0.018707					215	69	4	0	0	0	0.73902	1	57764	57764		0.30703	0	1	1230700			58726	10338	42853	43186	57267	57267					0.15821705793609908
VIQVEHYII	9	Unmodified	_VIQVEHYII_					0	0	0			REV__PCDH15|p.R134Q|1|0.27|ENSG00000150275|chr10:54369193-54369193|C/T|missense_variant	REV__PCDH15|p.R134Q|1|0.27|ENSG00000150275|chr10:54369193-54369193|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	557.7179565429688	2	557.318774	1112.623	-0.49196	-0.00027418	-0.29399	-0.00016385	-0.78595	-0.00043802	557.3185075929617	94.902	0.60889	95.647	95.375	95.984	0.74474					30	11	3	0	0	0	0.46045	1	36042	36042		36.127	12.106	1	4874100	+		58727	27723	42854	43187	57268	57268					0.07118889028470221
VIREINQNP	9	Unmodified	_VIREINQNP_					0	0	0		L1ME1_dup14741|chr8:25510836-25512219:-|1.0165124893605175|0.2188578600898351|2.22|472.0|13|1|sense	L1ME1_dup14741|chr8:25510836-25512219:-|1.0165124893605175|0.2188578600898351|2.22|472.0|13|1|sense	L1ME1_dup14741|chr8:25510836-25512219:-|1.0165124893605175|0.2188578600898351|2.22|472.0|13|1|sense	MULTI-SECPEP	A375_MHC_IP_R2	2	361.1991271972656	3	361.536612	1081.58801	-0.15511	-5.6079E-05	-2.5756	-0.00093119	-2.7307	-0.00098726	361.5355812598918	62.891	0.15097	63.634	63.534	63.685	0.74263					4	2	2	0	0	0	0.78351	1	23849	23849		1.0715	0.93157	1	349040			58728	14262	42855	43188	57269	57269					0.05047646220509705
VIREYFWDWQL	11	Unmodified	_VIREYFWDWQL_					0	0	0		ENST00000491370.1_1_2:220436262-220436478:-|nuORF	ENST00000491370.1_1_2:220436262-220436478:-|nuORF	ENST00000491370.1_1_2:220436262-220436478:-|nuORF	MSMS	A375_MHC_IP_R1	1	518.9710693359375	3	518.92951	1553.7667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.519	1	35.519	35.019	36.019	0								0	0	0	0.16332	1	11818	11818		1.4551	0	1				58729	12660	42856	43189	57270	57270					0.011966910687533527
VIRFCHPNI	9	Unmodified	_VIRFCHPNI_					0	0	0		ENST00000592279.6_1_19:15751729-15757926:+|nuORF;nc|ENSG00000186529|Q08477-2|CYP4F3	ENST00000592279.6_1_19:15751729-15757926:+|nuORF	ENST00000592279.6_1_19:15751729-15757926:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	550.1585083007812	2	549.797486	1097.58042	-0.74976	-0.00041222	1.5778	0.00086747	0.82803	0.00045525	549.7981752641201	86.096	1.0146	86.096	85.462	86.477	0					26	19	2	0	0	0	0.3607	1	31638	31638		34.102	6.4736	1	9411400			58730	13812	42857	43190	57271	57271					0.03553215419242406
VIRKKKFNKRK	11	Unmodified	_VIRKKKFNKRK_					0	0	0			REV__nc|ENSG00000197345|Q7Z2W9-2|MRPL21	REV__nc|ENSG00000197345|Q7Z2W9-2|MRPL21	MSMS	A375_MHC_IP_R1	1	722.8967895507812	2	722.982987	1443.95142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.78	1	112.78	112.28	113.28	0								0	0	0	0.16331	1	41339	41339		1.4819	0	1		+		58731	22280	42858	43191	57272	57272					0.24720343729813976
VIRKLRKNYF	10	Unmodified	_VIRKLRKNYF_					0	0	0			REV__ENSG00000179632|ENST00000322428|MAF1	REV__ENSG00000179632|ENST00000322428|MAF1	MULTI-SECPEP	A375_MHC_IP_R1	1	669.31298828125	2	668.914239	1335.81392	-0.79542	-0.00053207	0.19496	0.00013041	-0.60045	-0.00040165	668.9143797895146	84.387	0.65948	84.387	84.141	84.8	0					32	12	4	0	0	0	0.93615	1	30889	30889		7.2892	1.0834	1	10181000	+		58732	21573	42859	43192	57273	57273					0.15945015130409956
VIRKLRKNYF	10	Unmodified	_VIRKLRKNYF_					0	0	0			REV__ENSG00000179632|ENST00000322428|MAF1	REV__ENSG00000179632|ENST00000322428|MAF1	MULTI-MSMS	A375_MHC_IP_R2	2	669.3611450195312	2	668.914239	1335.81392	-0.74356	-0.00049738	-0.24207	-0.00016193	-0.98563	-0.00065931	668.9140530409725	83.386	0.71362	84.126	83.898	84.611	0.73962					30	13	3	0	0	0	0.71881	1	31718	31718		7.2892	1.0834	1	12883000	+		58733	21573	42859	43192	57274	57274					0.15945015130409956
VIRLARATKY	10	Unmodified	_VIRLARATKY_					0	0	0			REV__ENSG00000099822|ENST00000251287|HCN2;REV__ENSG00000138622|ENST00000261917|HCN4;REV__ENSG00000143630|ENST00000368358|HCN3	REV__ENSG00000099822|ENST00000251287|HCN2	MSMS	A375_MHC_IP_R2	2	595.8897094726562	2	595.87204	1189.72953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.39	1	112.13	111.63	112.63	0.73692								0	0	0	0.15549	1	42001	42001		2.9952	1.5133	1		+		58734	17026;19104;19376	42860	43193	57275	57275					0.14225064313654912
VIRLFVHPV	9	Unmodified	_VIRLFVHPV_					0	0	0		nc|ENSG00000105875|A4D1P6-2|WDR91	nc|ENSG00000105875|A4D1P6-2|WDR91	nc|ENSG00000105875|A4D1P6-2|WDR91	MSMS	A375_MHC_IP_R2	2	360.6291809082031	3	360.562321	1078.66514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.175	1	31.894	31.394	32.394	0.71857								0	0	0	0.15486	1	11011	11011		5.7319	1.5423	1				58735	14527	42861	43194	57276	57276					0.1289490922749792
VIRLHMSR	8	Unmodified	_VIRLHMSR_					0	0	0		ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	506.1455383300781	2	506.297653	1010.58075	-0.62611	-0.000317	0.29009	0.00014687	-0.33601	-0.00017012	506.29598285211694	90.654	0.55904	91.389	91.007	91.566	0.73451					13	10	2	0	0	0	0.95423	1	34478	34478		12.532	4.6214	1	704650			58736	3059	42862	43195	57277	57277					0.07588635139109101
VIRLLWKY	8	Unmodified	_VIRLLWKY_					0	0	0		ENST00000449237.4_1_Y:2803717-2829201:+|nuORF	ENST00000449237.4_1_Y:2803717-2829201:+|nuORF	ENST00000449237.4_1_Y:2803717-2829201:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	364.57940673828125	3	364.230572	1089.66989	0.43532	0.00015856	2.2537	0.00082086	2.689	0.00097942	364.2314341570507	22.913	0.30068	22.913	22.723	23.024	0					8	5	2	0	0	0	0.77815	1	6146	6146		1.6526	0	1	1418900			58737	12057	42863	43196	57278	57278					0.12863793370274834
VIRLQIYVS	9	Unmodified	_VIRLQIYVS_					0	0	0		FBLN5|p.R440Q|1|0.48|ENSG00000140092|chr14:91870252-91870252|C/T|missense_variant	FBLN5|p.R440Q|1|0.48|ENSG00000140092|chr14:91870252-91870252|C/T|missense_variant	FBLN5|p.R440Q|1|0.48|ENSG00000140092|chr14:91870252-91870252|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	546.234375	2	545.834591	1089.65463	-0.89205	-0.00048691	-0.0060919	-3.3252E-06	-0.89815	-0.00049024	545.8347168995037	51.035	0.50645	51.789	51.513	52.019	0.75406					20	9	3	0	0	0	0.55359	1	19170	19170		15.847	0	1	3117900			58738	13981	42864	43197	57279	57279					0.11338881782398857
VIRPRQWI	8	Unmodified	_VIRPRQWI_					0	0	0		ENST00000257245.8_1_11:57297613-57298180:-|nuORF	ENST00000257245.8_1_11:57297613-57298180:-|nuORF	ENST00000257245.8_1_11:57297613-57298180:-|nuORF	MSMS	A375_MHC_IP_R1	1	534.3988037109375	2	534.327268	1066.63998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.1	1	101.1	100.6	101.6	0								0	0	0	0.16876	1	37158	37158		6.3541	1.1234	1				58739	10247	42865	43198	57280	57280					0.10932854424913785
VIRQVKGVP	9	Unmodified	_VIRQVKGVP_					0	0	0			REV__nc|ENSG00000143889|Q8WVV9-3|HNRNPLL	REV__nc|ENSG00000143889|Q8WVV9-3|HNRNPLL	MULTI-SECPEP	A375_MHC_IP_R2	2	498.6521911621094	2	498.321651	994.62875	-0.8394	-0.00041829	-0.020243	-1.0087E-05	-0.85964	-0.00042838	498.3214772324312	57.531	0.35745	58.28	58.12	58.477	0.74894					10	6	2	0	0	0	0.77834	1	21827	21827		2.0598	0	1	949540	+		58740	19396	42866	43199	57281	57281					0.13122032330807087
VIRVRLGLF	9	Unmodified	_VIRVRLGLF_					0	0	0			REV__NOTCH3|p.C82Vfs*154|1|0.38|ENSG00000074181|chr19:15192474-15192474|G/-|frameshift_variant	REV__NOTCH3|p.C82Vfs*154|1|0.38|ENSG00000074181|chr19:15192474-15192474|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	358.6376953125	3	358.237838	1071.69168	0.065887	2.3603E-05	-0.24622	-8.8205E-05	-0.18033	-6.4602E-05	358.2377413769373	75.574	0.55347	75.574	75.312	75.865	0					24	10	4	0	0	0	0.7235	1	27545	27545		4.897	0	1	3069900	+		58741	27620	42867	43200	57282	57282					0.15870598118840462
VIRVRLGLF	9	Unmodified	_VIRVRLGLF_					0	0	0			REV__NOTCH3|p.C82Vfs*154|1|0.38|ENSG00000074181|chr19:15192474-15192474|G/-|frameshift_variant	REV__NOTCH3|p.C82Vfs*154|1|0.38|ENSG00000074181|chr19:15192474-15192474|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	358.9721984863281	3	358.237838	1071.69168	-0.22979	-8.2318E-05	-0.077824	-2.7879E-05	-0.30761	-0.0001102	358.23781269777413	74.309	0.50782	75.047	74.757	75.264	0.73752					22	9	3	0	0	0	0.69504	1	28195	28195		12.241	3.4953	1	4856200	+		58742	27620	42867	43200	57283	57283					0.15870598118840462
VIRVRLGLF	9	Unmodified	_VIRVRLGLF_					0	0	0			REV__NOTCH3|p.C82Vfs*154|1|0.38|ENSG00000074181|chr19:15192474-15192474|G/-|frameshift_variant	REV__NOTCH3|p.C82Vfs*154|1|0.38|ENSG00000074181|chr19:15192474-15192474|G/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	358.237838	1071.69168	0.065887	2.3603E-05	-0.24622	-8.8205E-05	-0.18033	-6.4602E-05	358.2377413769373	75.574	0.55347	75.574	75.312	75.865	0	0	0	NaN	4.897	24	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3069900	+		58743	27620	42867	43200							0.15870598118840462
VISAISLPL	9	Unmodified	_VISAISLPL_					0	0	0		nc|ENSG00000148516|P37275-3|ZEB1;nc|ENSG00000148516|P37275-4|ZEB1;nc|ENSG00000148516|P37275-5|ZEB1;ENST00000488625.6_1_10:31676182-31816189:+|nuORF;nc|ENSG00000148516|P37275|ZEB1;ENSG00000148516|ENST00000424869|ZEB1	nc|ENSG00000148516|P37275-3|ZEB1	nc|ENSG00000148516|P37275-3|ZEB1	MULTI-MSMS	A375_MHC_IP_R1	1	914.0073852539062	1	912.576445	911.569169	-0.35893	-0.00032755	-0.65955	-0.00060189	-1.0185	-0.00092944	912.5764920534609	131.86	0.45486	131.86	131.58	132.03	0					14	8	3	0	0	0	0.43185	1	50773	50773		23.148	0	1	8243500			58744	5749	42868	43201	57284	57284					0.10984716596738053
VISAQHPSR	9	Unmodified	_VISAQHPSR_					0	0	0		ENST00000281928.7_2_12:116408424-116409929:-|nuORF	ENST00000281928.7_2_12:116408424-116409929:-|nuORF	ENST00000281928.7_2_12:116408424-116409929:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	995.486328125	1	994.542854	993.535577	-0.055464	-5.5161E-05	-0.06529	-6.4934E-05	-0.12075	-0.0001201	994.5428722947996	134.09	0.25397	134.09	133.97	134.22	0					7	4	2	0	0	0	0.67332	1	51722	51722		9.3831	0.78985	1	4178200			58745	10432	42869	43202	57285	57285					0.038551078775640235
VISGELYNK	9	Unmodified	_VISGELYNK_					0	0	0		tr|U7T8A7|U7T8A7_FUSNUPTSsystem,N-acetylglucosamine-specificIIBCcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00177PE=4SV=1	tr|U7T8A7|U7T8A7_FUSNUPTSsystem,N-acetylglucosamine-specificIIBCcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00177PE=4SV=1	tr|U7T8A7|U7T8A7_FUSNUPTSsystem,N-acetylglucosamine-specificIIBCcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00177PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	1023.2509155273438	1	1022.55169	1021.54441	-0.031475	-3.2185E-05	1.3199	0.0013497	1.2884	0.0013175	1022.5525679944678	129.86	0.15039	129.86	129.75	129.9	0					4	2	2	0	0	0	0.65246	1	49943	49943		10.824	0	1	2928200			58746	30061	42870	43203	57286	57286					0.03450036723370431
VISPHGIASV	10	Unmodified	_VISPHGIASV_					0	0	0		ENSG00000135919|ENST00000409304|SERPINE2;chr2:224001922-224030072|455|26.05|0.76|5.1|-|ENST00000409840|SERPINE2,SERPINE2;nc|ENSG00000135919|P07093|SERPINE2;nc|ENSG00000135919|P07093-3|SERPINE2;chr2:224001922-224010343|462|38.94|0.94|5.37|-|ENST00000454956|SERPINE2,SERPINE2;ENST00000489065.1_1_2:224866320-224903835:-|nuORF	ENSG00000135919|ENST00000409304|SERPINE2	ENSG00000135919|ENST00000409304|SERPINE2	MULTI-SECPEP	A375_MHC_IP_R1	1	490.68212890625	2	490.282192	978.549831	0.1246	6.1091E-05	-0.47544	-0.0002331	-0.35083	-0.00017201	490.281961783605	48.633	2.236	48.633	48.274	50.51	0					102	43	5	0	0	0	0.033974	1	17116	17116		147.06	50.774	1	154520000			58747	463	42871	43204	57287	57287					0.05969760305856653
VISPHGIASV	10	Unmodified	_VISPHGIASV_					0	0	0		ENSG00000135919|ENST00000409304|SERPINE2;chr2:224001922-224030072|455|26.05|0.76|5.1|-|ENST00000409840|SERPINE2,SERPINE2;nc|ENSG00000135919|P07093|SERPINE2;nc|ENSG00000135919|P07093-3|SERPINE2;chr2:224001922-224010343|462|38.94|0.94|5.37|-|ENST00000454956|SERPINE2,SERPINE2;ENST00000489065.1_1_2:224866320-224903835:-|nuORF	ENSG00000135919|ENST00000409304|SERPINE2	ENSG00000135919|ENST00000409304|SERPINE2	MULTI-MSMS	A375_MHC_IP_R2	2	490.68194580078125	2	490.282192	978.549831	-0.42949	-0.00021057	-0.30833	-0.00015117	-0.73782	-0.00036174	490.2820245200547	47.796	2.3301	48.557	48.225	50.555	0.76128					112	45	5	0	0	0	0.00095756	3	17871	17871;18095;18325		147.06	50.774	1	174500000			58748	463	42871	43204	57288;57289;57290	57288					0.05969760305856653
VISQLLVNL	9	Unmodified	_VISQLLVNL_					0	0	0		OR2G2|p.P82S|1|0.31|ENSG00000177489|chr1:247588603-247588603|C/T|missense_variant	OR2G2|p.P82S|1|0.31|ENSG00000177489|chr1:247588603-247588603|C/T|missense_variant	OR2G2|p.P82S|1|0.31|ENSG00000177489|chr1:247588603-247588603|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	499.14801025390625	2	499.815867	997.617182	-0.39904	-0.00019945	-0.15093	-7.5439E-05	-0.54998	-0.00027489	499.8158263571492	86.151	0.61336	86.884	86.693	87.306	0.733					15	11	2	0	0	0	0.53748	1	32760	32760		18.146	0	1	1860400			58749	15071	42872	43205	57291	57291					0.11827790516804271
VISQVFEIK	9	Unmodified	_VISQVFEIK_					0	0	0		ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	MULTI-MSMS	A375_MHC_IP_R1	1	532.2127075195312	2	531.813325	1061.6121	-0.38165	-0.00020297	-1.9878	-0.0010571	-2.3695	-0.0012601	531.8129017785853	71.773	0.45341	71.773	71.615	72.069	0					16	8	2	0	0	0	0.31609	1	26129	26129		29.437	4.4462	1	3008300			58750	9094	42873	43206	57292	57292					0.08375486654176711
VISSPRKGW	9	Unmodified	_VISSPRKGW_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-SECPEP	A375_MHC_IP_R2	2	515.6654052734375	2	515.295633	1028.57671	-0.85468	-0.00044041	-0.13067	-6.7335E-05	-0.98535	-0.00050775	515.2956042457433	62.55	0.55876	63.292	62.925	63.484	0.74263					14	10	2	0	0	0	0.43707	1	23721	23721		36.044	1.9418	1	1196600			58751	2688	42874	43207	57293	57293					0.06356868917032443
VISSQPLSY	9	Unmodified	_VISSQPLSY_					0	0	0			REV__GLMP|p.P317S|1|0.55|ENSG00000198715|chr1:156293426-156293426|G/A|missense_variant	REV__GLMP|p.P317S|1|0.55|ENSG00000198715|chr1:156293426-156293426|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	497.6658630371094	2	497.266207	992.517862	-0.68476	-0.00034051	0.20811	0.00010349	-0.47665	-0.00023702	497.26624016235786	97.013	0.40502	97.768	97.569	97.974	0.75586					12	7	2	0	0	0	0.27715	1	36864	36864		32.305	1.6689	1	1529900	+		58752	26686	42875	43208	57294	57294					0.021303478320419345
VITDIHWLS	9	Unmodified	_VITDIHWLS_					0	0	0		nc|ENSG00000162643|Q8IWG1-2|DNAI3;ENSG00000162643|ENST00000294664|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	MULTI-SECPEP	A375_MHC_IP_R2	2	542.695068359375	2	542.295299	1082.57605	-0.74945	-0.00040642	1.0034	0.00054413	0.25394	0.00013771	542.2955789930113	89.129	0.45009	89.861	89.685	90.135	0.7318					13	8	2	0	0	0	0.3243	1	33936	33936		36.044	1.6425	1	1485800			58753	6572	42876	43209	57295	57295					0.038060294773458736
VITETVVEV	9	Unmodified	_VITETVVEV_					0	0	0		nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000109381|Q15723-2|ELF2;nc|ENSG00000109381|Q15723-3|ELF2;nc|ENSG00000109381|Q15723-1|ELF2;ENSG00000109381|ENST00000686138|ELF2;ENST00000514606.1_1_4:139988805-140005344:-|nuORF	nc|ENSG00000109381|Q15723-4|ELF2	nc|ENSG00000109381|Q15723-4|ELF2	MULTI-MSMS	A375_MHC_IP_R2	2	495.1813659667969	2	494.78169	987.548827	-0.54335	-0.00026884	-0.065339	-3.2329E-05	-0.60869	-0.00030117	494.78152967587283	81.846	0.81317	82.589	82.229	83.042	0.74294					32	15	3	0	0	0	0.0093345	1	31043	31043		104.8	19.442	1	7577100			58754	2867	42877	43210	57296	57296					0.054555011462980474
VITFPRAY	8	Unmodified	_VITFPRAY_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENST00000465402.1_1_X:53230656-53239709:-|nuORF;ENST00000492117.1_1_Y:21877982-21883284:-|nuORF;ENST00000481369.1_1_X:53230656-53231176:-|nuORF;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;ENST00000497100.5_1_X:53227940-53240837:-|nuORF;nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D	ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000126012|P41229-2|KDM5C	MULTI-SECPEP	A375_MHC_IP_R1	1	484.1735534667969	2	483.774003	965.533452	-0.70565	-0.00034137	0.43561	0.00021074	-0.27004	-0.00013064	483.7741449106237	68.083	1.3155	68.083	67.654	68.969	0					71	25	5	0	0	0	0.20664	1	24587	24587		67.344	37.119	1	77317000			58755	4020;3458;1013	42878	43211	57297	57297					0.04930679139749827
VITFPRAY	8	Unmodified	_VITFPRAY_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENST00000465402.1_1_X:53230656-53239709:-|nuORF;ENST00000492117.1_1_Y:21877982-21883284:-|nuORF;ENST00000481369.1_1_X:53230656-53231176:-|nuORF;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;ENST00000497100.5_1_X:53227940-53240837:-|nuORF;nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D	ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000126012|P41229-2|KDM5C	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6575622558594	2	483.774003	965.533452	-0.60431	-0.00029235	-0.023095	-1.1173E-05	-0.6274	-0.00030352	483.7739212989744	67.274	1.5254	68.011	67.546	69.071	0.73631					79	29	5	0	0	0	0.14819	1	25525	25525		89.427	42.506	1	59543000			58756	4020;3458;1013	42878	43211	57298	57298					0.04930679139749827
VITGLGTPTL	10	Unmodified	_VITGLGTPTL_					0	0	0			REV__tr|U7SMG5|U7SMG5_FUSNUButyrate-acetoacetateCoA-transferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01858PE=4SV=1	REV__tr|U7SMG5|U7SMG5_FUSNUButyrate-acetoacetateCoA-transferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01858PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	486.69256591796875	2	486.292225	970.569897	-0.17875	-8.6925E-05	0.028765	1.3988E-05	-0.14999	-7.2937E-05	486.29228214364116	70.774	0.61365	70.774	70.494	71.108	0					19	11	2	0	0	0	0.61429	1	25738	25738		30.637	6.616	1	2027900	+		58757	28302	42879	43212	57299	57299					0.08343511245811897
VITIGNER	8	Unmodified	_VITIGNER_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;POTEE|p.F955I|1|0.16|ENSG00000188219|chr2:131264318-131264318|T/A|missense_variant;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-SECPEP	A375_MHC_IP_R1	1	450.6344299316406	2	451.258717	900.50288	-0.072043	-3.251E-05	0.29519	0.00013321	0.22314	0.0001007	451.25874063728924	56.718	0.76205	56.718	56.397	57.159	0					22	14	2	0	0	0	0.96266	1	20231	20231		11.64	0	1	1723300			58758	1615;5418;9064	42880	43213	57300	57300					0.04864900754705559
VITSSDLSCIE	11	Unmodified	_VITSSDLSCIE_					0	0	0		RALGAPA1|p.P463S|1|0.65|ENSG00000174373|chr14:35742430-35742430|G/A|missense_variant	RALGAPA1|p.P463S|1|0.65|ENSG00000174373|chr14:35742430-35742430|G/A|missense_variant	RALGAPA1|p.P463S|1|0.65|ENSG00000174373|chr14:35742430-35742430|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	584.1842041015625	2	583.784104	1165.55365	-0.14723	-8.5952E-05	-0.33751	-0.00019703	-0.48474	-0.00028298	583.7840262427028	70.969	0.71644	70.969	70.597	71.313	0					31	13	3	0	0	0	0.67989	1	25745	25745		17.113	17.113	1	6552400			58759	15266	42881	43214	57301	57301					-0.022499827732417543
VITVFSSVKN	10	Unmodified	_VITVFSSVKN_					0	0	0		nc|ENSG00000078319|A4D2B8|PMS2P1;ENST00000305928.5_7:74945214-74945265:-|nuORF;nc|ENSG00000123965|A8MQ11|PMS2P5	nc|ENSG00000078319|A4D2B8|PMS2P1	nc|ENSG00000078319|A4D2B8|PMS2P1	MULTI-SECPEP	A375_MHC_IP_R1	1	547.7158813476562	2	547.316232	1092.61791	-0.47633	-0.0002607	0.053347	2.9198E-05	-0.42298	-0.00023151	547.3161397398788	54.661	0.96234	54.661	54.113	55.075	0					35	18	3	0	0	0	0.42334	1	19524	19524		51.63	15.124	1	8744500			58760	14486	42882	43215	57302	57302					0.07530585165864068
VITWYKNG	8	Unmodified	_VITWYKNG_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	A375_MHC_IP_R1	1	491.1631774902344	2	490.763635	979.512717	-0.71905	-0.00035288	0.69218	0.0003397	-0.026869	-1.3186E-05	490.7638394433104	68.133	0.5071	68.133	67.854	68.361	0					13	9	2	0	0	0	0.8957	1	24676	24676		28.487	2.1456	1	1592900			58761	5371	42883	43216	57303	57303					0.022140887600926362
VITWYKNG	8	Unmodified	_VITWYKNG_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MATCH	A375_MHC_IP_R2	2		2	490.763635	979.512717	-0.55623	-0.00027298	-0.087313	-4.285E-05	-0.64355	-0.00031583	490.76354260304254	67.272	0.50634	68.008	67.75	68.256	0.73631	-0.062448	-0.00045463	NaN	28.487	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1478000			58762	5371	42883	43216							0.022140887600926362
VIVFERGNL	9	Unmodified	_VIVFERGNL_					0	0	0			REV__tr|U7SUA4|U7SUA4_FUSNUDUF306domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01079PE=4SV=1	REV__tr|U7SUA4|U7SUA4_FUSNUDUF306domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01079PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1773681640625	2	523.803291	1045.59203	-0.50719	-0.00026567	1.6648	0.00087205	1.1577	0.00060638	524.3052234603676	67.616	0.66132	68.352	67.9	68.562	0.73631					26	12	3	0	0	0	0.55359	1	25505	25505		15.847	8.558	1	3457600	+		58763	28543	42884	43217	57304	57304					0.07105735714230832
VIVFERGNL	9	Unmodified	_VIVFERGNL_					0	0	0			REV__tr|U7SUA4|U7SUA4_FUSNUDUF306domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01079PE=4SV=1	REV__tr|U7SUA4|U7SUA4_FUSNUDUF306domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01079PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	523.803291	1045.59203	-0.70596	-0.00036978	0.33109	0.00017343	-0.37487	-0.00019636	523.8033746887955	68.472	0.45703	68.472	68.209	68.666	0	0.059708	-8.9822E-05	NaN	15.847	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2839100	+		58764	28543	42884	43217							0.07105735714230832
VIVLVAHSLG	10	Unmodified	_VIVLVAHSLG_					0	0	0			REV__chr2:15908796-15921568|130|20.81|0.0|12.5|+|2|TE_info:THE1B,THE1B_dup1673,ERVL-MaLR,LTR,donor,+,15908517,15908796|None,MYCNUT|3	REV__chr2:15908796-15921568|130|20.81|0.0|12.5|+|2|TE_info:THE1B,THE1B_dup1673,ERVL-MaLR,LTR,donor,+,15908517,15908796|None,MYCNUT|3	MULTI-SECPEP	A375_MHC_IP_R2	2	504.158935546875	2	504.316035	1006.61752	-0.57872	-0.00029186	0.62844	0.00031693	0.049713	2.5071E-05	504.31627193693396	84.418	0.55607	85.154	85.018	85.574	0.73602					17	10	3	0	0	0	0.85226	1	32076	32076		20.454	6.5476	1	1659600	+		58765	15699	42885	43218	57305	57305					0.11447210236644878
VIVRAIKDELS	11	Unmodified	_VIVRAIKDELS_					0	0	0			REV__SLC8A3|p.G71E|1|0.51|ENSG00000100678|chr14:70168211-70168211|C/T|missense_variant	REV__SLC8A3|p.G71E|1|0.51|ENSG00000100678|chr14:70168211-70168211|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	622.22900390625	2	621.874445	1241.73434	-0.8082	-0.0005026	-1.6915	-0.0010519	-2.4997	-0.0015545	621.8745354474302	142.97	1.35	142.97	142.49	143.84	0					39	26	2	0	0	0	0.99606	1	55077	55077		6.2058	0.97511	1	12220000	+		58766	28007	42886	43219	57306	57306					0.12313903665767612
VIWGTDVNV	9	Unmodified	_VIWGTDVNV_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	A375_MHC_IP_R1	1	502.1661376953125	2	501.766374	1001.5182	-0.35602	-0.00017864	-0.11287	-5.6637E-05	-0.4689	-0.00023528	501.7662627427867	100.45	0.60928	100.45	100.18	100.79	0					20	11	3	0	0	0	0.022213	1	36930	36930		81.613	31.68	1	1656400			58767	2532	42887	43220	57307	57307					0.017497675518939104
VIWKRDRSRYN	11	Unmodified	_VIWKRDRSRYN_					0	0	0			REV__ENSG00000123684|ENST00000366997|LPGAT1	REV__ENSG00000123684|ENST00000366997|LPGAT1	MULTI-MSMS	A375_MHC_IP_R1	1	374.3582458496094	4	373.958746	1491.80588	0.47309	0.00017692	-0.67694	-0.00025315	-0.20385	-7.6233E-05	373.9583193417737	44.147	0.81767	44.147	43.909	44.727	0					39	15	5	0	0	0	0.73502	1	15384	15384		4.1166	1.2733	1	15287000	+		58768	18257	42888	43221	57308	57308					0.07964836142991771
VIWKRDRSRYN	11	Unmodified	_VIWKRDRSRYN_					0	0	0			REV__ENSG00000123684|ENST00000366997|LPGAT1	REV__ENSG00000123684|ENST00000366997|LPGAT1	MULTI-MSMS	A375_MHC_IP_R2	2	374.3584289550781	4	373.958746	1491.80588	0.51326	0.00019194	-1.0217	-0.00038209	-0.50848	-0.00019015	373.95826276135574	43.374	0.80854	44.146	43.826	44.634	0.7724					39	15	4	0	0	0	0.73239	1	16163	16163		6.6235	0	1	15746000	+		58769	18257	42888	43221	57309	57309					0.07964836142991771
VIWWQRVYVFP	11	Unmodified	_VIWWQRVYVFP_					0	0	0		ENSG00000131055|ENST00000376075|COX4I2	ENSG00000131055|ENST00000376075|COX4I2	ENSG00000131055|ENST00000376075|COX4I2	MULTI-SECPEP	A375_MHC_IP_R2	2	373.5890808105469	4	373.957949	1491.80269	0.51326	0.00019194	1.1094	0.00041489	1.6227	0.00060682	373.95826276135574	43.374	0.80854	44.146	43.826	44.634	0.7724					39	15	4	0	0	0	0.99883	1	16197	16197		2.6312	2.6312	1	15746000			58770	4305	42889	43222	57310	57310					0.07646193036271143
VIYIFFDI	8	Unmodified	_VIYIFFDI_					0	0	0		nc|ENSG00000132958|Q6XPS3-7|TPTE2;ENSG00000132958|ENST00000697147|TPTE2	nc|ENSG00000132958|Q6XPS3-7|TPTE2	nc|ENSG00000132958|Q6XPS3-7|TPTE2	MULTI-SECPEP	A375_MHC_IP_R2	2	515.6859130859375	2	515.286411	1028.55827	-1.2919	-0.00066572	-0.34768	-0.00017915	-1.6396	-0.00084488	515.286130833058	53.513	0.3578	54.264	54.097	54.454	0.75105					12	6	2	0	0	0	0.85124	1	20227	20227		34.187	0	1	2967300			58771	4469	42890	43223	57311	57311					0.04513314222481313
VIYSTEIHY	9	Unmodified	_VIYSTEIHY_					0	0	0		ENSG00000170965|ENST00000359237|PLAC1	ENSG00000170965|ENST00000359237|PLAC1	ENSG00000170965|ENST00000359237|PLAC1	MULTI-SECPEP	A375_MHC_IP_R2	2	376.2489318847656	3	375.525602	1123.55498	-0.042787	-1.6067E-05	-2.84	-0.0010665	-2.8828	-0.0010826	375.52436435317617	23.161	0.25491	23.791	23.623	23.878	0.63014					6	4	2	0	0	0	0.77244	1	7379	7379		9.3831	4.0862	1	657140			58772	7565	42891	43224	57312	57312					-0.0018598062217733968
VIYYINLW	8	Unmodified	_VIYYINLW_					0	0	0			REV__ENSG00000157103|ENST00000287766|SLC6A1	REV__ENSG00000157103|ENST00000287766|SLC6A1	MULTI-SECPEP	A375_MHC_IP_R1	1	541.6665649414062	2	542.29731	1082.58007	-0.67704	-0.00036716	-2.5647	-0.0013908	-3.2418	-0.001758	542.2958580629617	89.746	0.50518	89.746	89.577	90.083	0					14	9	2	0	0	0	0.94479	1	32988	32988		13.508	0	1	1716900	+		58773	20011	42892	43225	57313	57313					0.042081189710415856
VKAAFALG	8	Unmodified	_VKAAFALG_					0	0	0		tr|U7SZ49|U7SZ49_FUSNUEnoyl-[acylcarrierprotein]reductaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00845PE=4SV=1	tr|U7SZ49|U7SZ49_FUSNUEnoyl-[acylcarrierprotein]reductaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00845PE=4SV=1	tr|U7SZ49|U7SZ49_FUSNUEnoyl-[acylcarrierprotein]reductaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00845PE=4SV=1	MSMS	A375_MHC_IP_R2	2	388.6330871582031	2	388.736889	775.459225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.613	1	63.355	62.855	63.855	0.74263								0	0	0	0.16876	1	23733	23733		2.5775	0	1				58774	29853	42893	43226	57314	57314					0.06251336048228495
VKAKAQGKQF	10	Unmodified	_VKAKAQGKQF_					0	0	0			REV__SCARF1|p.E721K|1|0.16|ENSG00000074660|chr17:1635090-1635090|C/T|missense_variant	REV__SCARF1|p.E721K|1|0.16|ENSG00000074660|chr17:1635090-1635090|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	553.2291870117188	2	552.82984	1103.64513	-0.63378	-0.00035037	0.01517	8.3866E-06	-0.61861	-0.00034198	552.8299750797341	52.516	1.4195	52.516	52.237	53.656	0					85	27	5	0	0	0	0.54638	1	19073	19073		36.127	4.8587	1	667140000	+		58775	27914	42894	43227	57315	57315					0.09745113496887825
VKAKAQGKQF	10	Unmodified	_VKAKAQGKQF_					0	0	0			REV__SCARF1|p.E721K|1|0.16|ENSG00000074660|chr17:1635090-1635090|C/T|missense_variant	REV__SCARF1|p.E721K|1|0.16|ENSG00000074660|chr17:1635090-1635090|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	553.2291870117188	2	552.82984	1103.64513	-0.45165	-0.00024968	-1.3359	-0.00073855	-1.7876	-0.00098824	552.8287460797723	53.622	2.1815	53.622	53.403	55.584	0					77	42	2	0	0	0	0.52461	1	19073	19073		36.127	10.728	1	5431000	+		58776	27914	42894	43227	57316	57316					0.09745113496887825
VKANDYISVK	10	Unmodified	_VKANDYISVK_					0	0	0		tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1;tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	379.94854736328125	3	379.548518	1135.62372	0.33331	0.00012651	-0.2695	-0.00010229	0.063817	2.4221E-05	379.54838170833295	40.838	0.40416	40.838	40.559	40.963	0					11	7	2	0	0	0	0.6806	2	14091	14091;14108		14.838	4.3104	1	3382300			58777	30053	42895	43228	57317;57318	57317					0.06133683677512636
VKANDYISVK	10	Unmodified	_VKANDYISVK_					0	0	0		tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1;tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	379.9481201171875	3	379.548518	1135.62372	0.012708	4.8232E-06	-0.69771	-0.00026482	-0.685	-0.00025999	379.54816575544737	40.028	0.35443	40.803	40.626	40.98	0.77451					11	6	2	0	0	0	0.6614	1	14842	14842		16.275	6.7306	1	2687000			58778	30053	42895	43228	57319	57319					0.06133683677512636
VKARRNTLHK	10	Unmodified	_VKARRNTLHK_					0	0	0		ENSG00000154240|ENST00000535342|CEP112	ENSG00000154240|ENST00000535342|CEP112	ENSG00000154240|ENST00000535342|CEP112	MULTI-MSMS	A375_MHC_IP_R1	1	612.2779541015625	2	611.878188	1221.74182	-0.68894	-0.00042154	0.44627	0.00027306	-0.24266	-0.00014848	611.8782578258231	149.53	2.1071	149.53	147.9	150	0					161	66	3	0	0	0	0.72669	1	57193	57193		0.35063	0	1	1074200			58779	6074	42896	43229	57320	57320					0.13982100776684092
VKATRKAKK	9	Unmodified	_VKATRKAKK_					0	0	0			REV__ENSG00000204186|ENST00000374423|ZDBF2	REV__ENSG00000204186|ENST00000374423|ZDBF2	MULTI-MSMS	A375_MHC_IP_R2	2	515.7476806640625	2	515.3482	1028.68185	-0.57343	-0.00029552	-0.002396	-1.2348E-06	-0.57583	-0.00029675	515.3480171200785	147.49	0.29324	147.51	147.41	147.7	0.019897					63	30	3	0	0	0	0.77827	1	57329	57329		0	0	1	154020	+		58780	22495	42897	43230	57321	57321					0.16865410113450707
VKAVRLQSL	9	Unmodified	_VKAVRLQSL_					0	0	0			REV__ENST00000495728.1_1_9:127623696-127624209:-|nuORF	REV__ENST00000495728.1_1_9:127623696-127624209:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	507.2229309082031	2	507.326934	1012.63931	-0.82161	-0.00041682	3.0183	0.0015313	2.1967	0.0011145	507.8308135859636	72.708	0.81439	73.443	73.073	73.887	0.73541					39	15	5	0	0	0	0.58271	1	27603	27603		14.838	7.549	1	9207100	+		58781	18978	42898	43231	57322	57322					0.13350014985246617
VKCETPNCPF	10	Unmodified	_VKCETPNCPF_					0	0	0		ENSG00000118503|ENST00000612899|TNFAIP3	ENSG00000118503|ENST00000612899|TNFAIP3	ENSG00000118503|ENST00000612899|TNFAIP3	MULTI-MSMS	A375_MHC_IP_R1	1	569.6559448242188	2	569.257002	1136.49945	-0.1552	-8.8348E-05	-1.6529	-0.00094095	-1.8081	-0.0010293	569.2561611684287	54.302	0.60471	54.302	53.962	54.567	0					22	11	3	0	0	0	0.70496	1	19402	19402		10.074	0.6908	1	2708400			58782	3545	42899	43232	57323	57323					-0.06333853405817536
VKCETPNCPF	10	Unmodified	_VKCETPNCPF_					0	0	0		ENSG00000118503|ENST00000612899|TNFAIP3	ENSG00000118503|ENST00000612899|TNFAIP3	ENSG00000118503|ENST00000612899|TNFAIP3	MULTI-SECPEP	A375_MHC_IP_R2	2	568.6487426757812	2	569.257002	1136.49945	-0.83564	-0.0004757	-1.2558	-0.00071488	-2.0915	-0.0011906	569.2560296725642	53.576	0.51214	54.327	54.097	54.609	0.75105					13	9	2	0	0	0	0.91556	1	20263	20263		6.2058	6.2058	1	2667700			58783	3545	42899	43232	57324	57324					-0.06333853405817536
VKCMWFLSA	9	Unmodified	_VKCMWFLSA_					0	0	0		ENST00000357681.9_1_1:203709714-203709879:+|nuORF	ENST00000357681.9_1_1:203709714-203709879:+|nuORF	ENST00000357681.9_1_1:203709714-203709879:+|nuORF	MSMS	A375_MHC_IP_R2	2	542.6945190429688	2	542.769548	1083.52454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.033	1	78.775	78.275	79.275	0.74293								0	0	0	0.15486	1	29633	29633		7.2892	0.56607	1				58784	10987	42900	43233	57325	57325					-0.013877538125598221
VKCRGGFG	8	Unmodified	_VKCRGGFG_					0	0	0			REV__ENST00000369909.6_1_1:109825175-109825695:-|nuORF	REV__ENST00000369909.6_1_1:109825175-109825695:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	823.8241577148438	1	823.424319	822.417042	-0.7307	-0.00060168	0.94778	0.00078042	0.21707	0.00017874	823.4246481970788	144.01	0.24963	144.01	143.78	144.03	0					6	4	2	0	0	0	0.77842	1	55244	55244		0.69038	0	1	1037000	+		58785	24024	42901	43234	57326	57326					-0.0012696263178213485
VKDKAITTRV	10	Unmodified	_VKDKAITTRV_					0	0	0		ENST00000532980.3_1_11:59055317-59056556:-|nuORF	ENST00000532980.3_1_11:59055317-59056556:-|nuORF	ENST00000532980.3_1_11:59055317-59056556:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1131.0882568359375	1	1130.68918	1129.68191	-0.30215	-0.00034163	-0.10064	-0.00011379	-0.40278	-0.00045542	1130.6889025139837	145.26	0.43398	145.26	145.02	145.45	0					33	25	2	0	0	0	0.72747	1	55690	55690		0	0	1	207260			58786	13191	42902	43235	57327	57327					0.12225365322751713
VKDTYLQQK	9	Unmodified	_VKDTYLQQK_					0	0	0		nc|ENSG00000186625|O75449-2|KATNA1;ENSG00000186625|ENST00000367411|KATNA1	nc|ENSG00000186625|O75449-2|KATNA1	nc|ENSG00000186625|O75449-2|KATNA1	MULTI-SECPEP	A375_MHC_IP_R2	2	374.26470947265625	3	374.876634	1121.60807	-0.020809	-7.8007E-06	-0.016395	-6.1459E-06	-0.037203	-1.3947E-05	374.87667182323275	21.078	0.60867	21.698	21.219	21.828	0.61932					27	11	4	0	0	0	0.73926	1	6609	6609		17.443	6.6431	1	2106400			58787	8765	42903	43236	57328	57328					0.05213397160468958
VKEGNQSKDM	10	Unmodified	_VKEGNQSKDM_					0	0	0			REV__ENST00000431012.5_1_6:30024744-30025305:-|nuORF	REV__ENST00000431012.5_1_6:30024744-30025305:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	378.6083984375	3	379.185251	1134.53392	0.43227	0.00016391	-0.42136	-0.00015977	0.010912	4.1376E-06	379.5191477146763	37.275	1.02	37.275	36.996	38.016	0					32	19	2	0	0	0	0.93911	1	12736	12736		4.1166	0.52957	1	6408000	+		58788	24701	42904	43237	57329	57329					-0.02796313993349031
VKEKKRNKKKK	11	Unmodified	_VKEKKRNKKKK_					0	0	0		ENST00000465086.1_1_2:100019089-100019579:-|nuORF;ENST00000413697.5_1_2:100019089-100065949:-|nuORF;nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1	ENST00000465086.1_1_2:100019089-100019579:-|nuORF	ENST00000465086.1_1_2:100019089-100019579:-|nuORF	MSMS	A375_MHC_IP_R1	1	707.7114868164062	2	707.472452	1412.93035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.57	1	145.57	145.07	146.07	0								0	0	0	0.1636	1	55779	55779		0	0	1				58789	4732	42905	43238	57330	57330					0.2404033363027338
VKELALFSL	9	Unmodified	_VKELALFSL_					0	0	0		ENSG00000186306|ENST00000334438|OR10T2	ENSG00000186306|ENST00000334438|OR10T2	ENSG00000186306|ENST00000334438|OR10T2	MULTI-SECPEP	A375_MHC_IP_R2	2	510.71063232421875	2	510.310418	1018.60628	-0.59204	-0.00030212	-0.014117	-7.204E-06	-0.60615	-0.00030933	510.31039131892175	110.22	1.8926	110.96	110.63	112.52	0.73692					110	36	5	0	0	0	0.056023	1	41731	41731		75.761	0	1	236620000			58790	8740	42906	43239	57331	57331					0.09772388142516775
VKETLEAGN	9	Unmodified	_VKETLEAGN_					0	0	0		nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;ENST00000473691.1_1_X:79938122-79975072:-|nuORF;nc|ENSG00000165288|Q6RI45-5|BRWD3	nc|ENSG00000165288|Q6RI45-3|BRWD3	nc|ENSG00000165288|Q6RI45-3|BRWD3	MULTI-MSMS	A375_MHC_IP_R2	2	480.6737060546875	2	480.753464	959.492375	-0.68629	-0.00032994	0.23513	0.00011304	-0.45116	-0.0002169	480.75361836433785	66.587	0.51188	67.323	66.983	67.495	0.73631					17	9	2	0	0	0	0.22013	1	25226	25226		36.506	4.2007	1	2547000			58791	6937	42907	43240	57332	57332					0.011008733096218748
VKEVHKNQP	9	Unmodified	_VKEVHKNQP_					0	0	0			REV__ENST00000542248.5_1_12:127245549-127248026:-|nuORF	REV__ENST00000542248.5_1_12:127245549-127248026:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	359.61322021484375	3	360.204974	1077.59309	-0.43745	-0.00015757	0.79806	0.00028747	0.36061	0.00012989	360.2052026256738	35.276	0.50494	36.039	35.778	36.283	0.76338					22	9	4	0	0	0	0.50702	1	12744	12744		13.615	2.1202	1	4517200	+		58792	25964	42908	43241	57333	57333					0.057399500831252226
VKEYHSQI	8	Unmodified	_VKEYHSQI_					0	0	0			REV__nc|ENSG00000104299|Q9NV88-3|INTS9	REV__nc|ENSG00000104299|Q9NV88-3|INTS9	MULTI-MSMS	A375_MHC_IP_R1	1	502.1663818359375	2	502.263999	1002.51345	0.10871	5.4599E-05	0.29751	0.00014943	0.40622	0.00020403	502.26437964764057	49.012	1.216	49.012	48.577	49.793	0					33	23	3	0	0	0	0.76654	1	17545	17545		15.847	1.2655	1	4638500	+		58793	17312	42909	43242	57334	57334					0.012288834091350509
VKFRLSRRRRR	11	Unmodified	_VKFRLSRRRRR_					0	0	0		ENSG00000145416|ENST00000514618|MARCHF1	ENSG00000145416|ENST00000514618|MARCHF1	ENSG00000145416|ENST00000514618|MARCHF1	MSMS	A375_MHC_IP_R2	2	765.6030883789062	2	765.489834	1528.96511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.66	1	124.99	124.49	125.49	0.32969								0	0	0	0.16354	1	48284	48284		0.30703	0.30703	1				58794	5558	42910	43243	57335	57335					0.2217901428159621
VKFYLVGHL	9	Unmodified	_VKFYLVGHL_					0	0	0			REV__ENST00000447282.5_1_12:53874154-53874502:+|nuORF	REV__ENST00000447282.5_1_12:53874154-53874502:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	359.9490966796875	3	359.21481	1074.6226	0.44136	0.00015854	-0.72742	-0.0002613	-0.28606	-0.00010276	359.54889892800014	22.755	0.60474	22.755	22.419	23.024	0					22	11	3	0	0	0	0.76452	1	6171	6171		12.241	6.0488	1	2456500	+		58795	24870	42911	43244	57336	57336					0.08827514099289147
VKGNEIVL	8	Unmodified	_VKGNEIVL_					0	0	0		nc|ENSG00000140022|Q8WXE9|STON2;nc|ENSG00000140022|Q8WXE9-3|STON2;ENSG00000140022|ENST00000614646|STON2;ENST00000555284.1_1_14:81736911-81745120:-|nuORF	nc|ENSG00000140022|Q8WXE9|STON2	nc|ENSG00000140022|Q8WXE9|STON2	MULTI-SECPEP	A375_MHC_IP_R1	1	436.66583251953125	2	436.26601	870.517468	-0.063009	-2.7488E-05	-0.20551	-8.9657E-05	-0.26852	-0.00011715	436.26587842416046	40.484	0.45734	40.484	40.203	40.66	0					14	8	2	0	0	0	0.36486	1	13908	13908		71.134	0	1	3740400			58796	5124	42912	43245	57337	57337					0.07702972902859528
VKGNEIVL	8	Unmodified	_VKGNEIVL_					0	0	0		nc|ENSG00000140022|Q8WXE9|STON2;nc|ENSG00000140022|Q8WXE9-3|STON2;ENSG00000140022|ENST00000614646|STON2;ENST00000555284.1_1_14:81736911-81745120:-|nuORF	nc|ENSG00000140022|Q8WXE9|STON2	nc|ENSG00000140022|Q8WXE9|STON2	MULTI-SECPEP	A375_MHC_IP_R2	2	436.6657409667969	2	436.26601	870.517468	-0.32124	-0.00014015	0.11651	5.0828E-05	-0.20474	-8.9319E-05	436.2659285672222	39.553	0.5589	40.327	40.067	40.626	0.77451					20	10	3	0	0	0	0.73563	1	14640	14640		36.044	0	1	3338000			58797	5124	42912	43245	57338	57338					0.07702972902859528
VKGTCFILRQ	10	Unmodified	_VKGTCFILRQ_					0	0	0			REV__nc|ENSG00000197444|Q9ULD0-3|OGDHL	REV__nc|ENSG00000197444|Q9ULD0-3|OGDHL	MULTI-MSMS	A375_MHC_IP_R1	1	388.92486572265625	3	388.890109	1163.6485	-0.10014	-3.8943E-05	0.0059451	2.312E-06	-0.094194	-3.6631E-05	389.22342555603444	23.534	0.30649	23.534	23.278	23.584	0					7	5	2	0	0	0	0.70925	1	6464	6464		4.7159	0	1	781920	+		58798	22289	42913	43246	57339	57339					0.07322040279245812
VKHIRRILV	9	Unmodified	_VKHIRRILV_					0	0	0			REV__nc|ENSG00000135317|Q9Y5W7-3|SNX14	REV__nc|ENSG00000135317|Q9Y5W7-3|SNX14	MULTI-SECPEP	A375_MHC_IP_R1	1	379.2767333984375	3	378.592504	1132.75568	0.20925	7.922E-05	0.24532	9.2876E-05	0.45457	0.0001721	378.59265478895367	23.283	0.30678	23.283	23.125	23.432	0					11	5	3	0	0	0	0.7911	1	6416	6416		7.609	0	1	2307100	+		58799	18842	42914	43247	57340	57340					0.19461378275786956
VKHPPKASV	9	Unmodified	_VKHPPKASV_					0	0	0		LTBP1|p.E492K|1|0.17|ENSG00000049323|chr2:33188624-33188624|G/A|missense_variant	LTBP1|p.E492K|1|0.17|ENSG00000049323|chr2:33188624-33188624|G/A|missense_variant	LTBP1|p.E492K|1|0.17|ENSG00000049323|chr2:33188624-33188624|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	481.6818542480469	2	481.792727	961.5709	-0.21269	-0.00010247	0.4527	0.00021811	0.24002	0.00011564	481.79260236181256	45.814	0.25342	45.814	45.636	45.89	0					5	4	2	0	0	0	0.73363	1	15999	15999		3.5965	0	1	738210			58800	14326	42915	43248	57341	57341					0.08857770405370502
VKHRKKSLIRL	11	Unmodified	_VKHRKKSLIRL_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MSMS	A375_MHC_IP_R1	1	459.6795959472656	3	459.977017	1376.90922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.614	1	75.614	75.114	76.114	0								0	0	0	0.1636	1	27549	27549		0	0	1				58801	1262	42916	43249	57342	57342					0.23584368321462534
VKIEHQPVL	9	Unmodified	_VKIEHQPVL_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	A375_MHC_IP_R1	1	532.2313842773438	2	531.818941	1061.62333	-0.42807	-0.00022766	-0.0922	-4.9033E-05	-0.52027	-0.00027669	531.8187647215824	49.845	0.3576	49.845	49.692	50.049	0					9	6	2	0	0	0	0.65246	1	17596	17596		10.824	0	1	1582500			58802	6242	42917	43250	57343	57343					0.09498308748334239
VKIGNQKGE	9	Unmodified	_VKIGNQKGE_					0	0	0			REV__tr|U7SXB5|U7SXB5_FUSNUDihydroorotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrCPE=3SV=1	REV__tr|U7SXB5|U7SXB5_FUSNUDihydroorotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrCPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	973.7156982421875	1	972.547271	971.539994	-0.69314	-0.00067411	0.18596	0.00018086	-0.50717	-0.00049325	972.547475781709	37.021	0.45553	37.792	37.615	38.07	0.7709					17	8	3	0	0	0	0.70886	1	13533	13533		6.2058	2.2614	1	5204800	+		58803	28620	42918	43251	57344	57344					0.05308572300475589
VKIGNQKGE	9	Unmodified	_VKIGNQKGE_					0	0	0			REV__tr|U7SXB5|U7SXB5_FUSNUDihydroorotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrCPE=3SV=1	REV__tr|U7SXB5|U7SXB5_FUSNUDihydroorotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrCPE=3SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		1	972.547271	971.539994	-0.092442	-8.9904E-05	0.45112	0.00043873	0.35867	0.00034883	972.5474014175903	37.984	0.50722	37.984	37.761	38.268	0	0.0961	0.00019165	NaN	6.2058	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7097800	+		58804	28620	42918	43251							0.05308572300475589
VKIHITGLRND	11	Unmodified	_VKIHITGLRND_					0	0	0		nc|ENSG00000164287|Q86Y33-4|CDC20B;nc|ENSG00000164287|Q86Y33-3|CDC20B;nc|ENSG00000164287|Q86Y33-2|CDC20B;ENSG00000164287|ENST00000381375|CDC20B	nc|ENSG00000164287|Q86Y33-4|CDC20B	nc|ENSG00000164287|Q86Y33-4|CDC20B	MULTI-MSMS	A375_MHC_IP_R1	1	422.98101806640625	3	422.582333	1264.72517	-0.23346	-9.8657E-05	-0.39105	-0.00016525	-0.62451	-0.00026391	422.5820357268673	129.99	1.3715	129.99	129.14	130.51	0					89	26	4	0	0	0	0.73807	2	49749	49749;49986		1.2148	0.588	1	49406000			58805	6812	42919	43252	57345;57346	57345					0.1033955510006308
VKIHITGLRND	11	Unmodified	_VKIHITGLRND_					0	0	0		nc|ENSG00000164287|Q86Y33-4|CDC20B;nc|ENSG00000164287|Q86Y33-3|CDC20B;nc|ENSG00000164287|Q86Y33-2|CDC20B;ENSG00000164287|ENST00000381375|CDC20B	nc|ENSG00000164287|Q86Y33-4|CDC20B	nc|ENSG00000164287|Q86Y33-4|CDC20B	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	422.582333	1264.72517	-0.23346	-9.8657E-05	-0.39105	-0.00016525	-0.62451	-0.00026391	422.5820357268673	129.99	1.3715	129.99	129.14	130.51	0	-0.020337	0.00046114	NaN	1.2148	89	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49406000			58806	6812	42919	43252							0.1033955510006308
VKIHITGLRND	11	Unmodified	_VKIHITGLRND_					0	0	0		nc|ENSG00000164287|Q86Y33-4|CDC20B;nc|ENSG00000164287|Q86Y33-3|CDC20B;nc|ENSG00000164287|Q86Y33-2|CDC20B;ENSG00000164287|ENST00000381375|CDC20B	nc|ENSG00000164287|Q86Y33-4|CDC20B	nc|ENSG00000164287|Q86Y33-4|CDC20B	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	422.582333	1264.72517	-0.16086	-6.7978E-05	-0.99172	-0.00041909	-1.1526	-0.00048706	422.58183368324694	129.81	1.5676	130.03	129.14	130.7	0.21419	0.020337	-0.00030037	NaN	1.2148	104	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45030000			58807	6812	42919	43252							0.1033955510006308
VKIKAKKAKK	10	Unmodified	_VKIKAKKAKK_					0	0	0			REV__ENSG00000055044|ENST00000264279|NOP58	REV__ENSG00000055044|ENST00000264279|NOP58	MSMS	A375_MHC_IP_R2	2	381.62994384765625	3	381.276293	1140.80705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.47	1	142.51	142.01	143.01	0.030731								0	0	0	0.15637	1	55698	55698		0.13989	0	1		+		58808	16411	42920	43253	57347	57347					0.2422770224982287
VKILSSKIKI	10	Unmodified	_VKILSSKIKI_					0	0	0		tr|U7SHZ9|U7SHZ9_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02179PE=4SV=1	tr|U7SHZ9|U7SHZ9_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02179PE=4SV=1	tr|U7SHZ9|U7SHZ9_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02179PE=4SV=1	MSMS	A375_MHC_IP_R1	1	376.94000244140625	3	376.92867	1127.76418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.312	1	19.312	18.812	19.812	0								0	0	0	0.15583	1	4684	4684		1.9064	1.1298	1				58809	29426	42921	43254	57348	57348					0.20540887401739383
VKINRKTAF	9	Unmodified	_VKINRKTAF_					0	0	0		ENSG00000109674|ENST00000264596|NEIL3;ENST00000513321.1_1_4:178274466-178274907:+|nuORF	ENSG00000109674|ENST00000264596|NEIL3	ENSG00000109674|ENST00000264596|NEIL3	MULTI-SECPEP	A375_MHC_IP_R2	2	359.24761962890625	3	359.557348	1075.65021	-0.14476	-5.205E-05	0.17376	6.2475E-05	0.028996	1.0426E-05	359.5572000617063	27.327	0.3058	28.006	27.843	28.149	0.67857					7	5	2	0	0	0	0.75842	1	9294	9294		5.7834	3.6974	1	880440			58810	2883	42922	43255	57349	57349					0.11541417359512707
VKKAKKKKK	9	Unmodified	_VKKAKKKKK_					0	0	0			REV__DKC1|p.E508K|1|0.11|ENSG00000130826|chrX:154776844-154776844|G/A|missense_variant	REV__DKC1|p.E508K|1|0.11|ENSG00000130826|chrX:154776844-154776844|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	542.6763916015625	2	543.397693	1084.78083	-0.82624	-0.00044898	-0.12387	-6.7313E-05	-0.95011	-0.00051629	543.3987830272005	67.344	0.20397	68.08	67.951	68.155	0.73631					5	3	2	0	0	0	0.81896	1	25476	25476		0	0	1	537140	+		58811	15995	42923	43256	57350	57350					0.24183433078360395
VKKELEKLKKK	11	Unmodified	_VKKELEKLKKK_					0	0	0			REV__tr|U7SQJ6|U7SQJ6_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01850PE=4SV=1	REV__tr|U7SQJ6|U7SQJ6_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01850PE=4SV=1	MSMS	A375_MHC_IP_R2	2	685.9578857421875	2	685.958312	1369.90207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.33646	1	0.8069	0.3069	1.3069	0.47044								0	0	0	0.1636	1	115	115		0	0	1		+		58812	28377	42924	43257	57351	57351					0.23191590930332495
VKKKISIISNA	11	Unmodified	_VKKKISIISNA_					0	0	0		ACSBG2|p.P538S|1|0.28|ENSG00000130377|chr19:6187354-6187354|C/T|missense_variant	ACSBG2|p.P538S|1|0.28|ENSG00000130377|chr19:6187354-6187354|C/T|missense_variant	ACSBG2|p.P538S|1|0.28|ENSG00000130377|chr19:6187354-6187354|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	1201.1666259765625	1	1200.76743	1199.76016	-0.36812	-0.00044203	0.1073	0.00012885	-0.26082	-0.00031318	1200.7671959519187	149.52	1.891	149.52	148.11	150	0					154	60	4	0	0	0	0.73934	1	56914	56914		0	0	1	1118800			58813	33	42925	43258	57352	57352					0.16826797908061053
VKKKKKEKKKR	11	Unmodified	_VKKKKKEKKKR_					0	0	0			REV__ENST00000337672.7_2_11:57471767-57471908:-|nuORF	REV__ENST00000337672.7_2_11:57471767-57471908:-|nuORF	MSMS	A375_MHC_IP_R1	1	714.6041870117188	2	714.49847	1426.98239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.02	1	110.02	109.52	110.52	0								0	0	0	0.1636	1	40345	40345		0	0	1		+		58814	23695	42926	43259	57353	57353					0.28597497044029296
VKKKKKKDK	9	Unmodified	_VKKKKKKDK_					0	0	0		nc|ENSG00000152404|Q2TBE0-3|CWF19L2;nc|ENSG00000152404|Q2TBE0-2|CWF19L2;ENSG00000152404|ENST00000282251|CWF19L2	nc|ENSG00000152404|Q2TBE0-3|CWF19L2	nc|ENSG00000152404|Q2TBE0-3|CWF19L2	MSMS	A375_MHC_IP_R1	1	377.29937744140625	3	377.264164	1128.77066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.604	1	16.604	16.104	17.104	0								0	0	0	0.15486	1	3870	3870		0	0	1				58815	14684	42927	43260	57354	57354					0.21142825353126682
VKKKKSGSKK	10	Unmodified	_VKKKKSGSKK_					0	0	0			REV__nc|ENSG00000118307|Q6TDU7-3|DNAI7	REV__nc|ENSG00000118307|Q6TDU7-3|DNAI7	MULTI-MSMS	A375_MHC_IP_R2	2	559.7738037109375	2	559.374415	1116.73428	-0.48724	-0.00027255	0.25211	0.00014102	-0.23513	-0.00013153	559.3743373629644	147.32	0.17166	147.34	147.27	147.44	0.019913					48	21	3	0	0	0	0.72747	1	57291	57291		0	0	1	176270	+		58816	18035	42928	43261	57355	57355					0.18057948456407757
VKKKKTSVKQ	10	Unmodified	_VKKKKTSVKQ_					0	0	0		ENST00000460832.1_1_3:113218243-113233639:-|nuORF;ENSG00000163611|ENST00000295872|SPICE1	ENST00000460832.1_1_3:113218243-113233639:-|nuORF	ENST00000460832.1_1_3:113218243-113233639:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	587.7874145507812	2	587.387522	1172.76049	-0.3769	-0.00022139	0.11969	7.0302E-05	-0.25721	-0.00015108	587.3874390616063	149.72	1.5766	149.74	148.44	150.01	0.01825					183	59	4	0	0	0	0.72645	1	58065	58065		0.45834	0	1	670840			58817	6691	42929	43262	57356	57356					0.1810221762789297
VKKLKLLLKG	10	Unmodified	_VKKLKLLLKG_					0	0	0			REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	MSMS	A375_MHC_IP_R1	1	570.4620971679688	2	570.415552	1138.81655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.31	1	121.31	120.81	121.81	0								0	0	0	0.15642	1	45040	45040		0	0	1		+		58818	20820	42930	43263	57357	57357					0.25269470535363325
VKKLSSGN	8	Unmodified	_VKKLSSGN_					0	0	0		nc|ENSG00000131142|O15444-3|CCL25;ENSG00000131142|ENST00000315626|CCL25	nc|ENSG00000131142|O15444-3|CCL25	nc|ENSG00000131142|O15444-3|CCL25	MULTI-MSMS	A375_MHC_IP_R2	2	833.819091796875	1	832.488693	831.481417	-0.57083	-0.00047521	1.5591	0.0012979	0.98829	0.00082274	832.4900857194463	144.08	0.23456	144.1	143.94	144.17	0.024414					7	4	2	0	0	0	0.77797	1	56279	56279		2.3027	0	1	1107700			58819	4310	42931	43264	57358	57358					0.058935157259952575
VKKLSSGN	8	Unmodified	_VKKLSSGN_					0	0	0		nc|ENSG00000131142|O15444-3|CCL25;ENSG00000131142|ENST00000315626|CCL25	nc|ENSG00000131142|O15444-3|CCL25	nc|ENSG00000131142|O15444-3|CCL25	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	832.488693	831.481417	-0.71339	-0.00059389	1.5347	0.0012776	0.82133	0.00068375	832.4899645474756	144.06	0.23721	144.06	143.89	144.12	0	-0.020449	-2.0173E-06	NaN	2.3027	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1548100			58820	4310	42931	43264							0.058935157259952575
VKKNSMECIY	10	Unmodified	_VKKNSMECIY_					0	0	0		ENST00000484642.5_1_10:23248371-23248795:+|nuORF;ENST00000483596.5_1_10:23220925-23250957:+|nuORF;nc|ENSG00000165309|Q5W041-5|ARMC3;nc|ENSG00000165309|Q5W041-3|ARMC3;nc|ENSG00000165309|Q5W041-4|ARMC3;ENSG00000165309|ENST00000298032|ARMC3	ENST00000484642.5_1_10:23248371-23248795:+|nuORF	ENST00000484642.5_1_10:23248371-23248795:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	406.33587646484375	3	405.535115	1213.58352	-0.48442	-0.00019645	3.8323	0.0015541	3.3479	0.0013577	405.871096499084	27.645	0.25223	27.645	27.482	27.735	0					6	4	2	0	0	0	0.93961	1	8368	8368		0.56317	0	1	1352800			58821	6940	42932	43265	57359	57359					-0.014733223089251624
VKKRAIVKKL	10	Unmodified	_VKKRAIVKKL_					0	0	0		nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1;nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1	nc|ENSG00000017260|P98194-4|ATP2C1	nc|ENSG00000017260|P98194-4|ATP2C1	MSMS	A375_MHC_IP_R2	2	591.7139282226562	2	591.924075	1181.8336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.34	1	101.11	100.61	101.61	0.76278								0	0	0	0.15642	1	38050	38050		0	0	1				58822	1040	42933	43266	57360	57360					0.24995391141146683
VKKRKKLLL	9	Unmodified	_VKKRKKLLL_					0	0	0		ENST00000438248.1_1_10:89603626-89603959:+|nuORF	ENST00000438248.1_1_10:89603626-89603959:+|nuORF	ENST00000438248.1_1_10:89603626-89603959:+|nuORF	MSMS	A375_MHC_IP_R1	1	563.2127685546875	2	563.413343	1124.81213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.847	1	99.847	99.347	100.35	0								0	0	0	0.15486	1	36688	36688		0.6015	0	1				58823	11946	42934	43267	57361	57361					0.2547200611245444
VKKRKKLLLF	10	Unmodified	_VKKRKKLLLF_					0	0	0		ENST00000438248.1_1_10:89603626-89603959:+|nuORF	ENST00000438248.1_1_10:89603626-89603959:+|nuORF	ENST00000438248.1_1_10:89603626-89603959:+|nuORF	MSMS	A375_MHC_IP_R2	2	636.94775390625	2	636.94755	1271.88055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.51	1	117.17	116.67	117.67	0.65962								0	0	0	0.15642	1	44014	44014		0	0	1				58824	11946	42935	43268	57362	57362					0.25548250692304464
VKKRNITE	8	Unmodified	_VKKRNITE_					0	0	0			REV__tr|U7SSJ1|U7SSJ1_FUSNUPutativepre-16SrRNAnucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01286PE=3SV=1	REV__tr|U7SSJ1|U7SSJ1_FUSNUPutativepre-16SrRNAnucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01286PE=3SV=1	MSMS	A375_MHC_IP_R1	1	494.7111511230469	2	494.300916	986.587279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.66	1	138.66	138.16	139.16	0								0	0	0	0.16876	1	53329	53329		2.3027	0	1		+		58825	28433	42936	43269	57363	57363					0.09344851571449908
VKKRRIKFFLL	11	Unmodified	_VKKRRIKFFLL_					0	0	0			REV__ENST00000220003.13_1_15:75095013-75095301:+|nuORF	REV__ENST00000220003.13_1_15:75095013-75095301:+|nuORF	MSMS	A375_MHC_IP_R2	2	724.4859619140625	2	724.484831	1446.95511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.411	1	73.146	72.646	73.646	0.73541								0	0	0	0.1636	1	27479	27479		0	0	1		+		58826	23047	42937	43270	57364	57364					0.24951013503687136
VKKSYIPKINQ	11	Unmodified	_VKKSYIPKINQ_					0	0	0		tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	440.33428955078125	3	439.934484	1316.78162	-0.33597	-0.0001478	0.18053	7.9423E-05	-0.15543	-6.838E-05	439.9345370499941	31.881	0.35362	32.618	32.401	32.755	0.73691					15	6	3	0	0	0	0.73111	1	11309	11309		7.846	0.36898	1	4184900			58827	29448	42938	43271	57365	57365					0.13590182936741257
VKKSYIPKINQ	11	Unmodified	_VKKSYIPKINQ_					0	0	0		tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	439.934484	1316.78162	-0.33597	-0.0001478	0.18053	7.9423E-05	-0.15543	-6.838E-05	439.9345370499941	31.881	0.35362	32.618	32.401	32.755	0.73691	-0.070364	0.00016747	NaN	7.846	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4184900			58828	29448	42938	43271							0.13590182936741257
VKLELCFER	9	Unmodified	_VKLELCFER_					0	0	0		ENST00000274457.4_1_5:114879222-114879282:-|nuORF	ENST00000274457.4_1_5:114879222-114879282:-|nuORF	ENST00000274457.4_1_5:114879222-114879282:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	379.2889099121094	3	379.542598	1135.60597	-0.53574	-0.00020334	-2.364	-0.00089724	-2.8997	-0.0011006	379.5416249323336	53.304	0.30573	54.056	53.842	54.147	0.75105					8	5	2	0	0	0	0.71541	1	20146	20146		2.2828	0	1	968880			58829	10399	42939	43272	57366	57366					0.04358645151000928
VKLREKRKEKE	11	Unmodified	_VKLREKRKEKE_					0	0	0			REV__nc|ENSG00000211780|A0A075B6T7|TRAV6	REV__nc|ENSG00000211780|A0A075B6T7|TRAV6	MULTI-MSMS	A375_MHC_IP_R1	1	722.3428955078125	2	721.943724	1441.8729	-0.92413	-0.00066717	0.49983	0.00036085	-0.4243	-0.00030632	721.9438800084996	149.14	2.5413	149.14	147.46	150	0					267	103	5	0	0	0	0.73926	1	57109	57109		0.26902	0.26902	1	2984200	+		58830	27477	42940	43273	57367	57367					0.16963446634031243
VKLREKRKEKE	11	Unmodified	_VKLREKRKEKE_					0	0	0			REV__nc|ENSG00000211780|A0A075B6T7|TRAV6	REV__nc|ENSG00000211780|A0A075B6T7|TRAV6	MULTI-MSMS	A375_MHC_IP_R2	2	482.03118896484375	3	481.631575	1441.8729	-0.38114	-0.00018357	-0.16128	-7.7679E-05	-0.54242	-0.00026125	481.6314064181661	149.29	1.5704	149.31	148.32	149.89	0.01825					76	50	2	0	0	0	0.73934	2	57831	57831;58026		0	0	1	147040	+		58831	27477	42940	43273	57368;57369	57368					0.16963446634031243
VKLRSEGKLF	10	Unmodified	_VKLRSEGKLF_					0	0	0			REV__ENST00000414372.1_1_3:42187654-42187789:-|nuORF	REV__ENST00000414372.1_1_3:42187654-42187789:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	393.26788330078125	3	392.908157	1175.70264	-0.0062774	-2.4664E-06	0.70351	0.00027641	0.69723	0.00027395	392.90844315979194	47.249	0.30629	48.01	47.817	48.123	0.76128					8	5	2	0	0	0	0.71076	1	17746	17746		7.4771	2.5801	1	1804200	+		58832	24505	42941	43274	57370	57370					0.12181955702453706
VKMAEKKPR	9	Unmodified	_VKMAEKKPR_					0	0	0			REV__ENSG00000078043|ENST00000585916|PIAS2	REV__ENSG00000078043|ENST00000585916|PIAS2	MULTI-SECPEP	A375_MHC_IP_R2	2	362.9381408691406	3	362.886588	1085.63793	0.097266	3.5296E-05	-0.89736	-0.00032564	-0.8001	-0.00029034	362.88623757546515	43.95	0.45421	44.719	44.48	44.934	0.7691					14	8	3	0	0	0	0.77901	1	16354	16354		3.5871	0	1	1879400	+		58833	16702	42942	43275	57371	57371					0.09854057624806956
VKMFAIKL	8	Unmodified	_VKMFAIKL_					0	0	0		ENST00000396024.7_1_15:60682488-60690176:-|nuORF	ENST00000396024.7_1_15:60682488-60690176:-|nuORF	ENST00000396024.7_1_15:60682488-60690176:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	949.9893188476562	1	949.590321	948.583045	-0.32219	-0.00030595	-0.1871	-0.00017767	-0.50929	-0.00048361	949.5900176270699	145.36	1.2168	145.36	144.87	146.09	0					139	104	2	0	0	0	0.77861	2	55624	55624;55785		0	0	1	310460			58834	11485	42943	43276	57372;57373	57372					0.10669670824177047
VKMLWRRMFP	10	Unmodified	_VKMLWRRMFP_					0	0	0			REV__ENST00000568088.5_3_16:68298566-68300600:+|nuORF	REV__ENST00000568088.5_3_16:68298566-68300600:+|nuORF	MSMS	A375_MHC_IP_R2	2	682.4439086914062	2	682.37812	1362.74169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.8784	1	8.2935	7.7935	8.7935	0.4151								0	0	0	0.15642	1	2482	2482		0	0	1		+		58835	26193	42944	43277	57374	57374					0.0748264146081965
VKNEEKGDY	9	Unmodified	_VKNEEKGDY_					0	0	0		SPAG17|p.K1084N|1|0.31|ENSG00000155761|chr1:118039359-118039359|C/G|missense_variant	SPAG17|p.K1084N|1|0.31|ENSG00000155761|chr1:118039359-118039359|C/G|missense_variant	SPAG17|p.K1084N|1|0.31|ENSG00000155761|chr1:118039359-118039359|C/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	541.6614379882812	2	541.261653	1080.50875	-1.1031	-0.00059708	0.59115	0.00031997	-0.51197	-0.00027711	541.2617350677925	58.055	0.50265	58.804	58.477	58.98	0.74894					17	9	2	0	0	0	0.32092	1	21932	21932		29.082	1.4528	1	2716900			58836	29227	42945	43278	57375	57375					-0.028280455242793323
VKNFQEDPC	9	Unmodified	_VKNFQEDPC_					0	0	0		ENST00000435630.5_1_3:32767082-32769198:+|nuORF	ENST00000435630.5_1_3:32767082-32769198:+|nuORF	ENST00000435630.5_1_3:32767082-32769198:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	539.6906127929688	2	540.244949	1078.47534	-1.2309	-0.00066499	-0.41479	-0.00022409	-1.6457	-0.00088908	540.2447183375548	28.424	0.55836	29.102	28.655	29.214	0.67857					15	10	2	0	0	0	0.76187	1	9756	9756		11.64	11.64	1	2718400			58837	11915	42946	43279	57376	57376					-0.06075370567828031
VKNKRSSGPG	10	Unmodified	_VKNKRSSGPG_					0	0	0			REV__ENST00000269485.11_1_18:60053308-60053521:+|nuORF	REV__ENST00000269485.11_1_18:60053308-60053521:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	514.7163696289062	2	515.293622	1028.57269	-0.72144	-0.00037176	0.40895	0.00021073	-0.31249	-0.00016102	515.2937649514137	26.999	0.50255	26.999	26.828	27.331	0					20	9	3	0	0	0	0.61429	1	8108	8108		30.637	13.694	1	10923000	+		58838	23268	42947	43280	57377	57377					0.05954779423336731
VKNKSHNL	8	Unmodified	_VKNKSHNL_					0	0	0			REV__nc|ENSG00000009413|O60673-2|REV3L	REV__nc|ENSG00000009413|O60673-2|REV3L	MULTI-MSMS	A375_MHC_IP_R2	2	470.6719055175781	2	470.272158	938.529764	-0.61377	-0.00028864	0.33942	0.00015962	-0.27436	-0.00012902	470.2721429414862	130.37	0.65839	130.59	130.1	130.75	0.2142					24	12	3	0	0	0	0.7773	1	51281	51281		4.756	0	1	11345000	+		58839	16184	42948	43281	57378	57378					0.05804009365908769
VKNNKLHV	8	Unmodified	_VKNNKLHV_					0	0	0			REV__ENSG00000144452|ENST00000272895|ABCA12	REV__ENSG00000144452|ENST00000272895|ABCA12	MULTI-SECPEP	A375_MHC_IP_R1	1	476.6899108886719	2	476.290351	950.566149	-0.30194	-0.00014381	-0.3195	-0.00015218	-0.62144	-0.00029599	476.2901745108315	35.721	0.35921	35.721	35.522	35.881	0					14	6	3	0	0	0	0.69059	1	11903	11903		46.921	12.519	1	6236500	+		58840	19424	42949	43282	57379	57379					0.08888886262616325
VKNRKAETKKK	11	Unmodified	_VKNRKAETKKK_					0	0	0			REV__MNDA|p.E142K|1|0.39|ENSG00000163563|chr1:158843976-158843976|G/A|missense_variant	REV__MNDA|p.E142K|1|0.39|ENSG00000163563|chr1:158843976-158843976|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	444.3482971191406	3	443.949016	1328.82522	-0.36981	-0.00016418	-0.81736	-0.00036287	-1.1872	-0.00052704	443.9485278906366	136.64	0.46063	136.64	136.46	136.92	0					17	8	3	0	0	0	0.73934	1	52647	52647		0	0	1	3193200	+		58841	27029	42950	43283	57380	57380					0.17395792433853785
VKNRKAETKKK	11	Unmodified	_VKNRKAETKKK_					0	0	0			REV__MNDA|p.E142K|1|0.39|ENSG00000163563|chr1:158843976-158843976|G/A|missense_variant	REV__MNDA|p.E142K|1|0.39|ENSG00000163563|chr1:158843976-158843976|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	443.949016	1328.82522	-0.36981	-0.00016418	-0.81736	-0.00036287	-1.1872	-0.00052704	443.9485278906366	136.64	0.46063	136.64	136.46	136.92	0	-0.020939	9.4049E-05	NaN	0	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3193200	+		58842	27029	42950	43283							0.17395792433853785
VKNRKAETKKK	11	Unmodified	_VKNRKAETKKK_					0	0	0			REV__MNDA|p.E142K|1|0.39|ENSG00000163563|chr1:158843976-158843976|G/A|missense_variant	REV__MNDA|p.E142K|1|0.39|ENSG00000163563|chr1:158843976-158843976|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	443.949016	1328.82522	-0.20072	-8.9109E-05	-0.96952	-0.00043042	-1.1702	-0.00051953	444.2829517850126	136.57	0.3631	136.68	136.55	136.92	0.11134	0.020939	-0.00010861	NaN	0	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2839100	+		58843	27029	42950	43283							0.17395792433853785
VKNSIGEI	8	Unmodified	_VKNSIGEI_					0	0	0			REV__tr|U7SL74|U7SL74_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02004PE=3SV=1	REV__tr|U7SL74|U7SL74_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02004PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	431.2879333496094	2	430.247818	858.481082	-0.028565	-1.229E-05	1.2315	0.00052985	1.2029	0.00051756	430.24817785811905	139.86	0.30672	139.92	139.75	140.06	0.059906					11	5	3	0	0	0	0.7779	1	54800	54800		2.5775	0	1	3166800	+		58844	28264	42951	43284	57381	57381					0.046180960061633414
VKNSIGEI	8	Unmodified	_VKNSIGEI_					0	0	0			REV__tr|U7SL74|U7SL74_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02004PE=3SV=1	REV__tr|U7SL74|U7SL74_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02004PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	430.247818	858.481082	-0.49185	-0.00021162	2.0558	0.00088449	1.5639	0.00067287	430.2485931439278	139.89	0.30884	139.89	139.67	139.98	0	-0.018767	0.00032095	NaN	2.5775	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2549900	+		58845	28264	42951	43284							0.046180960061633414
VKPIKVKRKKK	11	Unmodified	_VKPIKVKRKKK_					0	0	0		ENSG00000196663|ENST00000359520|TECPR2;nc|ENSG00000196663|O15040-2|TECPR2	ENSG00000196663|ENST00000359520|TECPR2	ENSG00000196663|ENST00000359520|TECPR2	MSMS	A375_MHC_IP_R1	1	676.3131103515625	2	676.484831	1350.95511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.11	1	145.11	144.61	145.61	0								0	0	0	0.1636	1	55632	55632		0	0	1				58846	9072	42952	43285	57382	57382					0.2936701350365638
VKPIKVKRKKK	11	Unmodified	_VKPIKVKRKKK_					0	0	0		ENSG00000196663|ENST00000359520|TECPR2;nc|ENSG00000196663|O15040-2|TECPR2	ENSG00000196663|ENST00000359520|TECPR2	ENSG00000196663|ENST00000359520|TECPR2	MSMS	A375_MHC_IP_R2	2	676.3129272460938	2	676.484831	1350.95511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.07	1	145.09	144.59	145.59	0.021408								0	0	0	0.1636	1	56647	56647		0	0	1				58847	9072	42952	43285	57383	57383					0.2936701350365638
VKQDNAQLFY	10	Unmodified	_VKQDNAQLFY_					0	0	0			REV__PLEKHA2|p.D100Vfs*2|1|0.67|ENSG00000169499|chr8:38946175-38946175|A/-|frameshift_variant	REV__PLEKHA2|p.D100Vfs*2|1|0.67|ENSG00000169499|chr8:38946175-38946175|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	409.6117248535156	3	409.211906	1224.61389	-0.015779	-6.4569E-06	-0.62657	-0.0002564	-0.64235	-0.00026286	409.2116755259005	30.926	0.35281	31.644	31.417	31.77	0.71857					8	6	2	0	0	0	0.94163	1	10945	10945		6.1918	1.2948	1	2966900	+		58848	27801	42953	43286	57384	57384					0.010564956721282215
VKRIVNKEE	9	Unmodified	_VKRIVNKEE_					0	0	0		nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	MULTI-SECPEP	A375_MHC_IP_R1	1	372.93670654296875	3	372.224146	1113.65061	0.051944	1.9335E-05	1.3667	0.0005087	1.4186	0.00052804	372.22455580816666	23.762	0.20293	23.762	23.635	23.838	0					5	3	2	0	0	0	0.80713	1	6618	6618		4.1895	0	1	1166800			58849	3085	42954	43287	57385	57385					0.09832792288693781
VKRKLLLLL	9	Unmodified	_VKRKLLLLL_					0	0	0		ENST00000433301.5_1_12:110943436-110952922:+|nuORF	ENST00000433301.5_1_12:110943436-110952922:+|nuORF	ENST00000433301.5_1_12:110943436-110952922:+|nuORF	MSMS	A375_MHC_IP_R1	1	365.77789306640625	3	365.937388	1094.79034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.596	1	18.596	18.096	19.096	0								0	0	0	0.15486	1	4441	4441		0	0	1				58850	11891	42955	43288	57386	57386					0.24673201363907538
VKRKREENLK	10	Unmodified	_VKRKREENLK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R1	1	650.795654296875	2	650.39641	1298.77827	-0.55891	-0.00036352	-0.47226	-0.00030715	-1.0312	-0.00067067	650.3960187817685	129.85	1.2696	129.85	129.14	130.41	0					68	24	3	0	0	0	0.7245	1	50024	50024		1.3295	1.3295	1	37627000			58851	9114	42956	43289	57387	57387					0.14082932882729438
VKRKREENLK	10	Unmodified	_VKRKREENLK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	650.39641	1298.77827	-0.55891	-0.00036352	-0.47226	-0.00030715	-1.0312	-0.00067067	650.3960187817685	129.85	1.2696	129.85	129.14	130.41	0	-0.053614	0.00029467	NaN	1.3295	68	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37627000			58852	9114	42956	43289							0.14082932882729438
VKRKREENLK	10	Unmodified	_VKRKREENLK_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	650.39641	1298.77827	-0.76688	-0.00049877	-0.86475	-0.00056243	-1.6316	-0.0010612	650.3957077996564	129.74	1.4659	129.96	129.09	130.55	0.2142	0.053614	-0.00021588	NaN	1.3295	78	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32644000			58853	9114	42956	43289							0.14082932882729438
VKRKRTKGKK	10	Unmodified	_VKRKRTKGKK_					0	0	0		nc|ENSG00000152404|Q2TBE0-3|CWF19L2	nc|ENSG00000152404|Q2TBE0-3|CWF19L2	nc|ENSG00000152404|Q2TBE0-3|CWF19L2	MSMS	A375_MHC_IP_R2	2	614.9193115234375	2	614.919855	1227.82516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.33211	1	0.80256	0.30256	1.3026	0.47044								0	0	0	0.15642	1	114	114		0	0	1				58854	14684	42957	43290	57388	57388					0.22035837224530042
VKRLHEVGRT	10	Unmodified	_VKRLHEVGRT_					0	0	0		ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	MULTI-MSMS	A375_MHC_IP_R2	2	597.7507934570312	2	597.856921	1193.69929	-0.49961	-0.00029869	-1.6732	-0.0010003	-2.1728	-0.001299	598.356685965297	132.74	0.91788	132.9	132.28	133.2	0.16487					30	17	2	0	0	0	0.72078	1	52194	52194		2.9952	0	1	3438900			58855	2153	42958	43291	57389	57389					0.11018705648439209
VKRLIRLKLF	10	Unmodified	_VKRLIRLKLF_					0	0	0			REV__TYMS|p.P277L|1|0.1|ENSG00000176890|chr18:672885-672885|C/T|missense_variant	REV__TYMS|p.P277L|1|0.1|ENSG00000176890|chr18:672885-672885|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	643.4451293945312	2	643.445175	1284.8758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.26	1	117.26	116.76	117.76	0								0	0	0	0.15629	1	43037	43037		0.40072	0	1		+		58856	28936	42959	43292	57390	57390					0.24475366549518185
VKRRRRWYFRV	11	Unmodified	_VKRRRRWYFRV_					0	0	0		ENST00000181839.8_1_7:39989715-39990237:+|nuORF	ENST00000181839.8_1_7:39989715-39990237:+|nuORF	ENST00000181839.8_1_7:39989715-39990237:+|nuORF	MSMS	A375_MHC_IP_R1	1	811.8671875	2	811.48676	1620.95897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.55	1	143.55	143.05	144.05	0								0	0	0	0.1636	1	55069	55069		0	0	1				58857	10073	42960	43293	57391	57391					0.17332496050084956
VKRYIRKR	8	Unmodified	_VKRYIRKR_					0	0	0		ENST00000439325.1_1_3:5228845-5229010:-|nuORF	ENST00000439325.1_1_3:5228845-5229010:-|nuORF	ENST00000439325.1_1_3:5228845-5229010:-|nuORF	MSMS	A375_MHC_IP_R2	2	373.63653564453125	3	373.580487	1117.71963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.483	1	38.254	37.754	38.754	0.7709								0	0	0	0.16876	1	13716	13716		5.7319	0	1				58858	11960	42961	43294	57392	57392					0.1654792109891332
VKSLKETT	8	Unmodified	_VKSLKETT_					0	0	0			REV__ENST00000441055.1_1_X:66594168-66594795:+|nuORF	REV__ENST00000441055.1_1_X:66594168-66594795:+|nuORF	MSMS	A375_MHC_IP_R1	1	453.6514892578125	2	453.26875	904.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.182	1	90.182	89.682	90.682	0								0	0	0	0.16876	1	33140	33140		13.508	0	1		+		58859	24803	42962	43295	57393	57393					0.0668665169465612
VKSLKLRRPLY	11	Unmodified	_VKSLKLRRPLY_					0	0	0		ENSG00000144230|ENST00000486700|GPR17;nc|ENSG00000144230|Q13304|GPR17;ENST00000486700.1_1_2:128403737-128409326:+|nuORF	ENSG00000144230|ENST00000486700|GPR17	ENSG00000144230|ENST00000486700|GPR17	MSMS	A375_MHC_IP_R2	2	687.0916748046875	2	686.942996	1371.87144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.03	1	106.79	106.29	107.29	0.75977								0	0	0	0.16302	1	40086	40086		2.9952	1.6657	1				58860	5474	42963	43296	57394	57394					0.20037857335978515
VKTLHPNIHG	10	Unmodified	_VKTLHPNIHG_					0	0	0		tr|U7SU44|U7SU44_FUSNUBifunctionalpurinebiosynthesisproteinPurHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purHPE=3SV=1	tr|U7SU44|U7SU44_FUSNUBifunctionalpurinebiosynthesisproteinPurHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purHPE=3SV=1	tr|U7SU44|U7SU44_FUSNUBifunctionalpurinebiosynthesisproteinPurHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purHPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	372.28533935546875	3	372.548852	1114.62473	0.27483	0.00010239	-1.1404	-0.00042485	-0.86557	-0.00032247	372.5483825944764	38.552	0.35986	38.552	38.319	38.679	0					10	6	2	0	0	0	0.91442	1	13018	13018		10.315	2.3698	1	1829900			58861	29737	42964	43297	57395	57395					0.07199942837064555
VKTTFVTHV	9	Unmodified	_VKTTFVTHV_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;ENST00000479355.1_1_3:52529402-52535457:+|nuORF;nc|ENSG00000010327|Q9NY15-2|STAB1;ENST00000481607.1_1_3:52529402-52542549:+|nuORF	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-SECPEP	A375_MHC_IP_R2	2	516.697265625	2	516.297842	1030.58113	-0.84052	-0.00043396	0.050361	2.6001E-05	-0.79016	-0.00040796	516.297804900299	41.61	0.40834	42.384	42.198	42.607	0.77451					16	7	3	0	0	0	0.33896	1	15456	15456		47.594	1.8948	1	2805000			58862	981	42965	43298	57396	57396					0.06706333339934645
VKVDWNQNL	9	Unmodified	_VKVDWNQNL_					0	0	0			REV__ENST00000593477.1_1_19:41312411-41313222:+|nuORF	REV__ENST00000593477.1_1_19:41312411-41313222:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	558.09814453125	2	558.29583	1114.57711	-0.67664	-0.00037777	1.4072	0.00078565	0.73059	0.00040789	558.7994454847983	83.522	1.0683	84.261	83.595	84.663	0.73962					46	20	3	0	0	0	0.50702	1	31652	31652		32.305	0	1	4619100	+		58863	22940	42966	43299	57397	57397					0.024402438462402642
VKVEYGTLF	9	Unmodified	_VKVEYGTLF_					0	0	0			REV__nc|ENSG00000163050|Q8NI60-2|COQ8A	REV__nc|ENSG00000163050|Q8NI60-2|COQ8A	MULTI-MSMS	A375_MHC_IP_R2	2	528.762451171875	2	528.292225	1054.5699	-0.53835	-0.00028441	-1.8038	-0.00095293	-2.3421	-0.0012373	528.7933216209696	31.893	0.2	32.63	32.504	32.704	0.73692					5	3	2	0	0	0	0.58047	1	11325	11325		15.847	1.9411	1	708330	+		58864	20331	42967	43300	57398	57398					0.04479511245813228
VKVKTALPNWR	11	Unmodified	_VKVKTALPNWR_					0	0	0			REV__nc|ENSG00000130653|Q6ZV29-3|PNPLA7	REV__nc|ENSG00000130653|Q6ZV29-3|PNPLA7	MSMS	A375_MHC_IP_R2	2	656.797607421875	2	656.398422	1310.78229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.6	1	12.098	11.598	12.598	0.49811								0	0	0	0.1636	1	3589	3589		0	0	1		+		58865	18551	42968	43301	57399	57399					0.139330223764091
VKVNYELLDLY	11	Unmodified	_VKVNYELLDLY_					0	0	0		tr|U7STE7|U7STE7_FUSNUYhcGPDDEXKnucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01383PE=4SV=1	tr|U7STE7|U7STE7_FUSNUYhcGPDDEXKnucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01383PE=4SV=1	tr|U7STE7|U7STE7_FUSNUYhcGPDDEXKnucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01383PE=4SV=1	MSMS	A375_MHC_IP_R2	2	684.9830322265625	2	684.874111	1367.73367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.52	1	117.18	116.68	117.68	0.65962								0	0	0	0.16203	1	44025	44025		8.1555	2.4237	1				58866	29684	42969	43302	57400	57400					0.0645106422605295
VKVTKKSKR	9	Unmodified	_VKVTKKSKR_					0	0	0			REV__ENSG00000135248|ENST00000621392|GARIN1B	REV__ENSG00000135248|ENST00000621392|GARIN1B	MULTI-MSMS	A375_MHC_IP_R1	1	537.7604370117188	2	537.361308	1072.70806	-1.0457	-0.00056193	0.014044	7.5466E-06	-1.0317	-0.00055438	537.361264742761	147.38	0.22992	147.38	147.29	147.52	0					52	24	3	0	0	0	0.77827	1	56315	56315		0	0	1	325590	+		58867	18834	42970	43303	57401	57401					0.1746167928495197
VKVVREKGVE	10	Unmodified	_VKVVREKGVE_					0	0	0		tr|U7STN7|U7STN7_FUSNUDeoxyuridine5'-triphosphatenucleotidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dutPE=3SV=1	tr|U7STN7|U7STN7_FUSNUDeoxyuridine5'-triphosphatenucleotidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dutPE=3SV=1	tr|U7STN7|U7STN7_FUSNUDeoxyuridine5'-triphosphatenucleotidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dutPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	381.900146484375	3	381.567912	1141.68191	-0.33061	-0.00012615	-1.9957	-0.00076148	-2.3263	-0.00088763	381.901048550347	19.152	0.40235	19.755	19.583	19.986	0.60308					11	7	2	0	0	0	0.7086	1	5841	5841		8.4443	0.49891	1	1236600			58868	29709	42971	43304	57402	57402					0.11673365322803875
VKWPRYIRLQR	11	Unmodified	_VKWPRYIRLQR_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	A375_MHC_IP_R1	1	757.8554077148438	2	757.956969	1513.89939	-0.85536	-0.00064833	0.21259	0.00016113	-0.64277	-0.00048719	758.4582835603277	142.4	1.0114	142.4	141.98	142.99	0					36	19	4	0	0	0	0.73902	1	54658	54658		0.30703	0	1	2433100			58869	5729	42972	43305	57403	57403					0.16299180316036654
VKWPRYIRLQR	11	Unmodified	_VKWPRYIRLQR_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	A375_MHC_IP_R2	2	757.8553466796875	2	757.956969	1513.89939	-0.70418	-0.00053374	0.5054	0.00038307	-0.19878	-0.00015067	758.4582931092398	142.46	0.86401	142.49	142.03	142.89	0.030731					27	16	3	0	0	0	0.73902	1	55707	55707		0.30703	0.30703	1	3070200			58870	5729	42972	43305	57404	57404					0.16299180316036654
VKYFHYLPVDF	11	Unmodified	_VKYFHYLPVDF_					0	0	0			REV__ENST00000561512.1_1_16:53495692-53498290:+|nuORF	REV__ENST00000561512.1_1_16:53495692-53498290:+|nuORF	MSMS	A375_MHC_IP_R2	2	476.6625671386719	3	476.583451	1426.72852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.13	1	131.34	130.84	131.84	0.2097								0	0	0	0.16224	1	51584	51584		7.0371	4.4058	1		+		58871	17277	42973	43306	57405	57405					0.0322280515406419
VKYNDPIYV	9	Unmodified	_VKYNDPIYV_					0	0	0		nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;ENST00000441188.2_1_X:92478653-92479352:-|nuORF;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1	nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000006125|P63010-3|AP2B1	MULTI-SECPEP	A375_MHC_IP_R1	1	556.1950073242188	2	555.795132	1109.57571	-0.57917	-0.0003219	0.079103	4.3965E-05	-0.50007	-0.00027794	555.7951175052161	59.213	0.50916	59.213	58.938	59.448	0					24	9	3	0	0	0	0.13064	1	21279	21279		65.235	23.395	1	6012800			58872	909;2149	42974	43307	57406	57406					0.025306097574684827
VKYNDPIYV	9	Unmodified	_VKYNDPIYV_					0	0	0		nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;ENST00000441188.2_1_X:92478653-92479352:-|nuORF;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1	nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000006125|P63010-3|AP2B1	MULTI-SECPEP	A375_MHC_IP_R2	2	556.1945190429688	2	555.795132	1109.57571	-1.0801	-0.00060031	0.20246	0.00011252	-0.87764	-0.00048779	555.7952274405825	58.36	0.50887	59.109	58.829	59.338	0.74894					22	9	3	0	0	0	0.011451	1	22082	22082		118.89	68.962	1	6770400			58873	909;2149	42974	43307	57407	57407					0.025306097574684827
VLAAGVVPL	9	Unmodified	_VLAAGVVPL_					0	0	0		ENSG00000128342|ENST00000249075|LIF	ENSG00000128342|ENST00000249075|LIF	ENSG00000128342|ENST00000249075|LIF	MULTI-SECPEP	A375_MHC_IP_R1	1	420.17327880859375	2	419.773471	837.53239	0.36381	0.00015272	0.2059	8.6432E-05	0.56972	0.00023915	419.77346110826335	108.5	0.45627	108.5	108.26	108.71	0					18	8	3	0	0	0	0.4045	1	39806	39806		36.466	0	1	3895900			58874	4135	42975	43308	57408	57408					0.10712464770847419
VLAAGVVPL	9	Unmodified	_VLAAGVVPL_					0	0	0		ENSG00000128342|ENST00000249075|LIF	ENSG00000128342|ENST00000249075|LIF	ENSG00000128342|ENST00000249075|LIF	MULTI-SECPEP	A375_MHC_IP_R2	2	420.173095703125	2	419.773471	837.53239	-0.12891	-5.4111E-05	-0.24874	-0.00010441	-0.37764	-0.00015852	419.7732850341858	107.6	0.61214	108.35	108	108.61	0.75436					25	11	3	0	0	0	0.4045	1	40600	40600		36.466	8.2929	1	2497800			58875	4135	42975	43308	57409	57409					0.10712464770847419
VLAATLAQA	9	Unmodified	_VLAATLAQA_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MULTI-MSMS	A375_MHC_IP_R1	1	429.65814208984375	2	429.258185	856.501818	-0.19523	-8.3803E-05	0.046473	1.9949E-05	-0.14875	-6.3854E-05	429.25821840049434	64.691	0.6116	64.691	64.393	65.005	0					16	11	2	0	0	0	0.083809	1	23387	23387		53.576	11.481	1	2250100			58876	7673	42976	43309	57410	57410					0.06782686385793113
VLAATLAQA	9	Unmodified	_VLAATLAQA_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MULTI-MSMS	A375_MHC_IP_R2	2	429.65771484375	2	429.258185	856.501818	-0.14136	-6.068E-05	0.0061287	2.6308E-06	-0.13523	-5.8049E-05	429.2581158417443	63.788	0.55835	64.528	64.292	64.85	0.74022					22	10	3	0	0	0	0.083809	1	24180	24180		53.576	5.2297	1	4021000			58877	7673	42976	43309	57411	57411					0.06782686385793113
VLAATMKF	8	Unmodified	_VLAATMKF_					0	0	0		ENSG00000269433|ENST00000599405|OPN1MW3;ENSG00000268221|ENST00000595290|OPN1MW;ENSG00000166160|ENST00000369929|OPN1MW2;ENSG00000102076|ENST00000369951|OPN1LW	ENSG00000269433|ENST00000599405|OPN1MW3	ENSG00000269433|ENST00000599405|OPN1MW3	MULTI-MSMS	A375_MHC_IP_R2	2	441.6816711425781	2	440.751682	879.48881	-0.49277	-0.00021719	0.21106	9.3026E-05	-0.2817	-0.00012416	440.7516881206969	54.85	0.613	55.601	55.32	55.933	0.75075					24	11	3	0	0	0	0.77554	1	20675	20675		11.114	0	1	6303500			58878	2355	42977	43310	57412	57412					0.04424532002065007
VLADALKSI	9	Unmodified	_VLADALKSI_					0	0	0		ENST00000573554.1_1_16:18800267-18800435:-|nuORF;ENSG00000134419|ENST00000322989|RPS15A	ENST00000573554.1_1_16:18800267-18800435:-|nuORF	ENST00000573554.1_1_16:18800267-18800435:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	465.686279296875	2	465.286943	928.559333	-0.64274	-0.00029906	-0.14237	-6.6244E-05	-0.78511	-0.0003653	465.28679916963483	75.67	0.51001	76.411	76.181	76.691	0.74052					21	9	3	0	0	0	0.13244	1	28736	28736		51.415	13.441	1	3463700			58879	4573	42978	43311	57413	57413					0.09219528591370363
VLADFGARV	9	Unmodified	_VLADFGARV_					0	0	0		nc|ENSG00000242110|Q9UHK6-4|AMACR;nc|ENSG00000242110|Q9UHK6-2|AMACR;ENSG00000242110|ENST00000335606|AMACR;nc|ENSG00000242110|Q9UHK6-5|AMACR	nc|ENSG00000242110|Q9UHK6-4|AMACR	nc|ENSG00000242110|Q9UHK6-4|AMACR	MULTI-SECPEP	A375_MHC_IP_R1	1	474.6689453125	2	474.269084	946.523616	-0.40342	-0.00019133	0.50584	0.00023991	0.10243	4.8577E-05	474.26925156231823	63.043	0.86887	63.043	62.66	63.529	0					38	16	4	0	0	0	0.14572	1	22725	22725		45.7	1.8413	1	13375000			58880	9792	42979	43312	57414	57414					0.048214911343848144
VLADLGSFES	10	Unmodified	_VLADLGSFES_					0	0	0		nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10;ENSG00000253846|ENST00000398610|PCDHGA10	nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10	nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10	MSMS	A375_MHC_IP_R2	2	519.2161865234375	2	519.261122	1036.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.368	1	62.113	61.613	62.613	0.74503								0	0	0	0.15105	1	23258	23258		15.847	0	1				58881	9870	42980	43313	57415	57415					-0.00910259893203147
VLADLKVQL	9	Unmodified	_VLADLKVQL_					0	0	0		ENSG00000101132|ENST00000371419|PFDN4;ENST00000487129.1_1_20:52825073-52835686:+|nuORF	ENSG00000101132|ENST00000371419|PFDN4	ENSG00000101132|ENST00000371419|PFDN4	MULTI-SECPEP	A375_MHC_IP_R1	1	500.21575927734375	2	499.815867	997.617182	-0.48652	-0.00024317	-0.43349	-0.00021666	-0.92001	-0.00045983	499.8155796757814	87.028	0.60972	87.028	86.831	87.441	0					17	11	2	0	0	0	0.10495	1	31931	31931		57.249	9.5004	1	1914900			58882	2253	42981	43314	57416	57416					0.11827790516804271
VLAEELHKV	9	Unmodified	_VLAEELHKV_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-SECPEP	A375_MHC_IP_R1	1	519.70263671875	2	519.303124	1036.5917	-0.32794	-0.0001703	-0.63928	-0.00033198	-0.96722	-0.00050228	519.3027213967102	35.536	0.40876	35.536	35.319	35.727	0					17	7	3	0	0	0	0.65527	1	11848	11848		12.241	0	1	4380300			58883	4058	42982	43315	57417	57417					0.07486315994378856
VLAEELHKV	9	Unmodified	_VLAEELHKV_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1378784179688	2	519.303124	1036.5917	-0.8723	-0.00045299	-0.58023	-0.00030132	-1.4525	-0.00075431	519.3028744841496	34.637	0.35427	35.401	35.273	35.627	0.76338					11	6	2	0	0	0	0.61452	1	12520	12520		20.415	5.5763	1	3125800			58884	4058	42982	43315	57418	57418					0.07486315994378856
VLAELPQQV	9	Unmodified	_VLAELPQQV_					0	0	0		ENST00000565951.1_1_16:57181456-57181567:+|nuORF;ENST00000567011.1_1_16:57179810-57181567:+|nuORF;nc|ENSG00000140848|Q96FN4-2|CPNE2;ENSG00000140848|ENST00000290776|CPNE2	ENST00000565951.1_1_16:57181456-57181567:+|nuORF	ENST00000565951.1_1_16:57181456-57181567:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	499.1897277832031	2	498.78985	995.565146	-0.25013	-0.00012476	-0.18808	-9.3811E-05	-0.43821	-0.00021857	498.78976358637647	79.101	0.66023	79.101	78.707	79.367	0					23	12	3	0	0	0	0.10103	1	28869	28869		62.573	0	1	3682500			58885	5189	42983	43316	57419	57419					0.06718627103055042
VLAELPQQV	9	Unmodified	_VLAELPQQV_					0	0	0		ENST00000565951.1_1_16:57181456-57181567:+|nuORF;ENST00000567011.1_1_16:57179810-57181567:+|nuORF;nc|ENSG00000140848|Q96FN4-2|CPNE2;ENSG00000140848|ENST00000290776|CPNE2	ENST00000565951.1_1_16:57181456-57181567:+|nuORF	ENST00000565951.1_1_16:57181456-57181567:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	499.1891784667969	2	498.78985	995.565146	-0.49079	-0.0002448	-0.14258	-7.1116E-05	-0.63336	-0.00031591	498.7897292415622	78.445	0.50696	79.189	78.931	79.438	0.74474					23	9	4	0	0	0	0.059859	1	29775	29775		81.89	0	1	4810200			58886	5189	42983	43316	57420	57420					0.06718627103055042
VLAELVRLG	9	Unmodified	_VLAELVRLG_					0	0	0		ENSG00000102053|ENST00000338957|ZC3H12B	ENSG00000102053|ENST00000338957|ZC3H12B	ENSG00000102053|ENST00000338957|ZC3H12B	MULTI-MSMS	A375_MHC_IP_R1	1	486.36395263671875	2	485.30821	968.601866	-0.46231	-0.00022437	-0.058962	-2.8615E-05	-0.52128	-0.00025298	485.30814963658776	85.793	2.2849	85.793	85.462	87.747	0					113	44	4	0	0	0	0.17338	1	31366	31366		39.95	0	1	101360000			58887	2354	42984	43317	57421	57421					0.11630923719633302
VLAETLTQV	9	Unmodified	_VLAETLTQV_					0	0	0		ENSG00000005339|ENST00000262367|CREBBP;nc|ENSG00000005339|Q92793-2|CREBBP	ENSG00000005339|ENST00000262367|CREBBP	ENSG00000005339|ENST00000262367|CREBBP	MULTI-SECPEP	A375_MHC_IP_R1	1	486.6815185546875	2	487.281857	972.549162	-0.23464	-0.00011434	-0.024142	-1.1764E-05	-0.25878	-0.0001261	487.28175688149497	81.489	1.6229	81.489	81.049	82.672	0					73	31	3	0	0	0	0.012104	1	29854	29854		115.69	60.918	1	28200000			58888	890	42985	43318	57422	57422					0.0617892086613665
VLAETLTQV	9	Unmodified	_VLAETLTQV_					0	0	0		ENSG00000005339|ENST00000262367|CREBBP;nc|ENSG00000005339|Q92793-2|CREBBP	ENSG00000005339|ENST00000262367|CREBBP	ENSG00000005339|ENST00000262367|CREBBP	MULTI-MSMS	A375_MHC_IP_R2	2	487.68145751953125	2	487.281857	972.549162	-0.65325	-0.00031832	0.093086	4.5359E-05	-0.56016	-0.00027296	487.2818339562108	80.716	1.8264	81.461	80.759	82.586	0.74473					78	35	4	0	0	0	0.0019764	1	30601	30601		144.35	48.066	1	24794000			58889	890	42985	43318	57423	57423					0.0617892086613665
VLAFAMCI	8	Unmodified	_VLAFAMCI_					0	0	0		ENST00000284037.9_1_5:65374825-65374855:+|nuORF	ENST00000284037.9_1_5:65374825-65374855:+|nuORF	ENST00000284037.9_1_5:65374825-65374855:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	434.67950439453125	2	434.226985	866.439417	-0.45604	-0.00019802	0.28314	0.00012295	-0.1729	-7.5076E-05	434.2271217417569	26.043	0.45551	26.043	25.816	26.271	0					10	8	2	0	0	0	0.77554	1	7669	7669		11.114	1.767	1	1603200			58890	10440	42986	43319	57424	57424					0.0008550072160460331
VLAFAMCI	8	Unmodified	_VLAFAMCI_					0	0	0		ENST00000284037.9_1_5:65374825-65374855:+|nuORF	ENST00000284037.9_1_5:65374825-65374855:+|nuORF	ENST00000284037.9_1_5:65374825-65374855:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	434.226985	866.439417	-0.69961	-0.00030379	0.44107	0.00019152	-0.25854	-0.00011227	434.22718778065257	25.396	0.25459	26.04	25.873	26.128	0.64368	-0.0013918	6.486E-05	NaN	11.114	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1601000			58891	10440	42986	43319							0.0008550072160460331
VLAGAVSVLV	10	Unmodified	_VLAGAVSVLV_					0	0	0		ENSG00000221933|ENST00000641663|OR2A25	ENSG00000221933|ENST00000641663|OR2A25	ENSG00000221933|ENST00000641663|OR2A25	MULTI-SECPEP	A375_MHC_IP_R1	1	464.69720458984375	2	464.29731	926.580068	-0.17614	-8.1784E-05	-0.11741	-5.4512E-05	-0.29355	-0.0001363	464.2972041484801	53.58	0.45698	53.58	53.301	53.758	0					20	8	3	0	0	0	0.16517	1	19111	19111		71.134	8.5609	1	11880000			58892	9672	42987	43320	57425	57425					0.11384118971045609
VLAGAVSVLV	10	Unmodified	_VLAGAVSVLV_					0	0	0		ENSG00000221933|ENST00000641663|OR2A25	ENSG00000221933|ENST00000641663|OR2A25	ENSG00000221933|ENST00000641663|OR2A25	MULTI-SECPEP	A375_MHC_IP_R2	2	464.6967468261719	2	464.29731	926.580068	-1.0924	-0.00050719	0.52492	0.00024372	-0.56747	-0.00026347	464.29752763293766	52.766	0.65707	53.517	53.031	53.688	0.75105					28	12	3	0	0	0	0.16517	1	19895	19895		71.134	4.6769	1	11019000			58893	9672	42987	43320	57426	57426					0.11384118971045609
VLAGQLQAV	9	Unmodified	_VLAGQLQAV_					0	0	0			REV__NAALAD2|p.R570Q|3|0.6|ENSG00000077616|chr11:90177968-90177968|G/A|missense_variant	REV__NAALAD2|p.R570Q|3|0.6|ENSG00000077616|chr11:90177968-90177968|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	450.1349792480469	2	449.77146	897.528367	-0.15744	-7.0811E-05	-1.0866	-0.00048873	-1.2441	-0.00055955	449.7711931955051	43.332	0.25356	44.105	44.028	44.282	0.7724					6	4	2	0	0	0	0.62767	1	16177	16177		23.148	0	1	1003300	+		58894	27079	42988	43321	57427	57427					0.07550375277128296
VLAGQLRGV	9	Unmodified	_VLAGQLRGV_					0	0	0		nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT	nc|ENSG00000147813|Q6XQN6-3|NAPRT	nc|ENSG00000147813|Q6XQN6-3|NAPRT	MSMS	A375_MHC_IP_R1	1	457.1846008300781	2	456.784902	911.55525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.256	1	46.256	45.756	46.756	0								0	0	0	0.13141	1	16220	16220		32.305	7.6316	1				58895	5707	42989	43322	57428	57428					0.09593483888318133
VLAHITADI	9	Unmodified	_VLAHITADI_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B;KDM5B|p.S470F|1|0.14|ENSG00000117139|chr1:202755400-202755400|G/A|missense_variant	ENSG00000117139|ENST00000367265|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	MULTI-SECPEP	A375_MHC_IP_R1	1	477.1761779785156	2	476.776742	951.538931	-0.49708	-0.000237	-0.15677	-7.4745E-05	-0.65385	-0.00031174	476.77683701904743	63.807	0.61222	63.807	63.529	64.141	0					16	11	3	0	0	0	0.011416	1	23090	23090		89.427	38.572	1	1799000			58896	3458	42990	43323	57429	57429					0.061223579315424104
VLAHITADI	9	Unmodified	_VLAHITADI_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B;KDM5B|p.S470F|1|0.14|ENSG00000117139|chr1:202755400-202755400|G/A|missense_variant	ENSG00000117139|ENST00000367265|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	MULTI-MATCH	A375_MHC_IP_R2	2		2	476.776742	951.538931	-0.51476	-0.00024542	0.62036	0.00029577	0.10561	5.0351E-05	476.7770095585974	62.786	0.55425	63.528	63.333	63.888	0.74263	-0.13917	0.0003274	NaN	89.427	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1677300			58897	3458	42990	43323							0.061223579315424104
VLAHTDFTL	9	Unmodified	_VLAHTDFTL_					0	0	0			REV__ENST00000529312.5_1_11:82985712-82996176:-|nuORF	REV__ENST00000529312.5_1_11:82985712-82996176:-|nuORF	MSMS	A375_MHC_IP_R1	1	508.71783447265625	2	508.7742	1015.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.836	1	87.836	87.336	88.336	0								0	0	0	0.13201	1	32237	32237		32.117	6.7177	1		+		58898	19014	42991	43324	57430	57430					0.026700540689716945
VLAHTILGV	9	Unmodified	_VLAHTILGV_					0	0	0		ENSG00000109775|ENST00000264689|UFSP2;ENST00000510206.5_1_4:186321548-186327081:-|nuORF	ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	MULTI-SECPEP	A375_MHC_IP_R1	1	462.1893615722656	2	461.789653	921.564752	-0.2395	-0.0001106	0.10992	5.0761E-05	-0.12957	-5.9836E-05	461.7896404593839	75.517	1.108	75.517	75.211	76.319	0					40	21	3	0	0	0	0.011416	1	27479	27479		114.94	61.368	1	7396700			58899	2891	42992	43325	57431	57431					0.10083252173876645
VLAHTILGV	9	Unmodified	_VLAHTILGV_					0	0	0		ENSG00000109775|ENST00000264689|UFSP2;ENST00000510206.5_1_4:186321548-186327081:-|nuORF	ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	MULTI-SECPEP	A375_MHC_IP_R2	2	461.2314758300781	2	461.789653	921.564752	-0.53302	-0.00024614	0.19769	9.1291E-05	-0.33533	-0.00015485	461.7896910135027	74.537	0.71307	75.275	74.958	75.671	0.73751					30	13	3	0	0	0	0.011416	1	28230	28230		89.427	45.02	1	8368700			58900	2891	42992	43325	57432	57432					0.10083252173876645
VLAKELVEV	9	Unmodified	_VLAKELVEV_					0	0	0		ENSG00000058453|ENST00000375541|CROCC;ENST00000494191.6_1_1:17270607-17280126:+|nuORF;ENST00000591348.5_1_1:16802327-16812083:-|nuORF;nc|ENSG00000290842|Q8IVE0|CROCCP3	ENSG00000058453|ENST00000375541|CROCC;ENST00000591348.5_1_1:16802327-16812083:-|nuORF	ENSG00000058453|ENST00000375541|CROCC	MULTI-SECPEP	A375_MHC_IP_R1	1	499.6531066894531	2	500.307875	998.601197	-0.48657	-0.00024343	-0.15153	-7.581E-05	-0.63809	-0.00031924	500.30791425300004	65.33	0.6109	65.33	65.055	65.666	0					27	11	3	0	0	0	0.14606	1	23675	23675		63.961	11.692	1	5662800			58901	1293;13798	42993	43326	57433	57433					0.10184084279899253
VLALRPWSF	9	Unmodified	_VLALRPWSF_					0	0	0		nc|ENSG00000120942|Q9Y5Z9-2|UBIAD1;ENSG00000120942|ENST00000376810|UBIAD1	nc|ENSG00000120942|Q9Y5Z9-2|UBIAD1	nc|ENSG00000120942|Q9Y5Z9-2|UBIAD1	MULTI-MSMS	A375_MHC_IP_R1	1	545.2160034179688	2	544.816202	1087.61785	-0.29143	-0.00015877	-0.12916	-7.037E-05	-0.42059	-0.00022914	544.815998315019	112.03	0.45695	112.03	111.82	112.28	0					14	8	2	0	0	0	0.073067	1	41080	41080		55.503	26.421	1	1535300			58902	3700	42994	43327	57434	57434					0.07754629956502868
VLALRPWSF	9	Unmodified	_VLALRPWSF_					0	0	0		nc|ENSG00000120942|Q9Y5Z9-2|UBIAD1;ENSG00000120942|ENST00000376810|UBIAD1	nc|ENSG00000120942|Q9Y5Z9-2|UBIAD1	nc|ENSG00000120942|Q9Y5Z9-2|UBIAD1	MULTI-MATCH	A375_MHC_IP_R2	2		2	544.816202	1087.61785	-0.62891	-0.00034264	0.43169	0.00023519	-0.19722	-0.00010745	545.3179375165512	111.08	0.56332	111.82	111.55	112.11	0.73692	-0.10913	0.0005179	NaN	55.503	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1620800			58903	3700	42994	43327							0.07754629956502868
VLALYRDLS	9	Unmodified	_VLALYRDLS_					0	0	0			REV__ENSG00000127533|ENST00000248076|F2RL3	REV__ENSG00000127533|ENST00000248076|F2RL3	MSMS	A375_MHC_IP_R1	1	525.6891479492188	2	525.303124	1048.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.27	1	131.27	130.77	131.77	0								0	0	0	0.15486	1	50611	50611		13.042	0	1		+		58904	18426	42995	43328	57435	57435					0.06934315994362805
VLANKIFGI	9	Unmodified	_VLANKIFGI_					0	0	0		nc|ENSG00000031003|Q9NYF5-2|FAM13B;nc|ENSG00000031003|Q9NYF5|FAM13B;ENSG00000031003|ENST00000689681|FAM13B	nc|ENSG00000031003|Q9NYF5-2|FAM13B	nc|ENSG00000031003|Q9NYF5-2|FAM13B	MULTI-SECPEP	A375_MHC_IP_R1	1	488.20489501953125	2	487.805303	973.596052	-0.50669	-0.00024716	-0.087893	-4.2875E-05	-0.59458	-0.00029004	487.8051760026347	90.971	0.60798	90.971	90.641	91.249	0					20	11	2	0	0	0	0.05755	1	33399	33399		81.613	33.267	1	3187900			58905	1111	42996	43329	57436	57436					0.10819825207954636
VLANKIFGI	9	Unmodified	_VLANKIFGI_					0	0	0		nc|ENSG00000031003|Q9NYF5-2|FAM13B;nc|ENSG00000031003|Q9NYF5|FAM13B;ENSG00000031003|ENST00000689681|FAM13B	nc|ENSG00000031003|Q9NYF5-2|FAM13B	nc|ENSG00000031003|Q9NYF5-2|FAM13B	MULTI-SECPEP	A375_MHC_IP_R2	2	488.205322265625	2	487.805303	973.596052	-0.48634	-0.00023724	0.064481	3.1454E-05	-0.42186	-0.00020579	487.80530255545375	89.927	0.66519	90.659	90.391	91.056	0.7318					26	12	3	0	0	0	0.096726	1	34201	34201		71.134	22.788	1	3321000			58906	1111	42996	43329	57437	57437					0.10819825207954636
VLAPLPLHGV	10	Unmodified	_VLAPLPLHGV_					0	0	0		nc|ENSG00000113269|Q86XS8-2|RNF130;ENSG00000113269|ENST00000521389|RNF130	nc|ENSG00000113269|Q86XS8-2|RNF130	nc|ENSG00000113269|Q86XS8-2|RNF130	MULTI-SECPEP	A375_MHC_IP_R1	1	508.71783447265625	2	508.318577	1014.6226	-0.40092	-0.0002038	-0.3466	-0.00017619	-0.74753	-0.00037998	508.31836979358485	87.923	0.5612	87.923	87.593	88.154	0					24	10	3	0	0	0	0.37407	1	32237	32237		40.449	4.3216	1	7438100			58907	3136	42997	43330	57438	57438					0.11587514099278451
VLAPLPLHGV	10	Unmodified	_VLAPLPLHGV_					0	0	0		nc|ENSG00000113269|Q86XS8-2|RNF130;ENSG00000113269|ENST00000521389|RNF130	nc|ENSG00000113269|Q86XS8-2|RNF130	nc|ENSG00000113269|Q86XS8-2|RNF130	MULTI-SECPEP	A375_MHC_IP_R2	2	508.7185974121094	2	508.318577	1014.6226	-0.61976	-0.00031503	0.25796	0.00013113	-0.3618	-0.00018391	508.31860876663427	86.947	0.5587	87.68	87.407	87.966	0.733					29	10	4	0	0	0	0.23013	1	33034	33034		49.669	20.587	1	5217800			58908	3136	42997	43330	57439	57439					0.11587514099278451
VLAPLVIYL	9	Unmodified	_VLAPLVIYL_					0	0	0		ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	MULTI-SECPEP	A375_MHC_IP_R1	1	501.2250671386719	2	500.825704	999.636855	-0.65303	-0.00032705	-0.13975	-6.9991E-05	-0.79278	-0.00039704	500.8257374511138	134.65	0.2538	134.65	134.52	134.78	0					7	4	2	0	0	0	0.77244	1	51961	51961		2.3027	0	1	1964300			58909	8072	42998	43331	57440	57440					0.13702166527536974
VLAPTREL	8	Unmodified	_VLAPTREL_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;DDX5|p.Y425Lfs*24|1|0.13|ENSG00000108654|chr17:64500716-64500717|-/A|frameshift_variant;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000428062.1_1_13:37513331-37513424:-|nuORF;ENST00000485101.5_1_3:186502728-186502902:+|nuORF;ENST00000578754.5_2_17:7476163-7480421:+|nuORF;ENST00000465032.5_1_3:186501384-186502902:+|nuORF;ENST00000465267.5_1_3:186501384-186502902:+|nuORF;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000107625|ENST00000373585|DDX50;DDX3X|p.V657Gfs*2|1|0.51|ENSG00000215301|chrX:41347694-41347695|-/G|frameshift_variant;ENSG00000215301|ENST00000644876|DDX3X;DDX3X|p.P297Rfs*22|1|0.21|ENSG00000215301|chrX:41344264-41344270|CTTGCGT/-|frameshift_variant;nc|ENSG00000215301|O00571-2|DDX3X;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENST00000463199.1_1_Y:15025644-15026909:+|nuORF;nc|ENSG00000067048|O15523-3|DDX3Y;EIF4A2|p.F391Lfs*14|1|0.08|ENSG00000156976|chr3:186789217-186789218|TC/-|frameshift_variant;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;EIF4A2|p.K194Rfs*11|1|0.29|ENSG00000156976|chr3:186786226-186786226|A/-|frameshift_variant;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF	ENSG00000108654|ENST00000225792|DDX5;ENSG00000165732|ENST00000354185|DDX21;DDX3X|p.V657Gfs*2|1|0.51|ENSG00000215301|chrX:41347694-41347695|-/G|frameshift_variant;EIF4A2|p.F391Lfs*14|1|0.08|ENSG00000156976|chr3:186789217-186789218|TC/-|frameshift_variant;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	A375_MHC_IP_R1	1	450.17132568359375	2	449.77146	897.528367	0.086385	3.8853E-05	-0.14466	-6.5062E-05	-0.058271	-2.6208E-05	449.77135787970917	42.867	1.934	42.867	42.537	44.471	0					80	37	5	0	0	0	0.33238	1	14818	14818		56.177	3.9087	1	160590000			58910	2826;6987;6498;13685;2131;727;832	42999	43332	57441	57441					0.07550375277128296
VLAQHPSPV	9	Unmodified	_VLAQHPSPV_					0	0	0			REV__ENST00000602656.1_1_16:67691843-67692206:-|nuORF	REV__ENST00000602656.1_1_16:67691843-67692206:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	474.66876220703125	2	474.269084	946.523616	-0.73191	-0.00034712	0.090019	4.2693E-05	-0.6419	-0.00030443	474.2691177292386	62.157	1.0132	62.9	62.421	63.434	0.74263					31	19	2	0	0	0	0.083712	1	23517	23517		56.177	0	1	12008000	+		58911	26515	43000	43333	57442	57442					0.048214911343848144
VLAQSPWIS	9	Unmodified	_VLAQSPWIS_					0	0	0			REV__ENST00000482005.5_1_17:61932137-61934782:+|nuORF	REV__ENST00000482005.5_1_17:61932137-61934782:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.7154235839844	2	500.776742	999.538931	-0.38482	-0.00019271	0.21163	0.00010598	-0.17319	-8.673E-05	500.7764430005332	75.539	1.2094	75.539	75.11	76.319	0					49	23	3	0	0	0	0.46038	1	27557	27557		21.747	0.87544	1	8387200	+		58912	25272	43001	43334	57443	57443					0.03914357931569157
VLARQVLN	8	Unmodified	_VLARQVLN_					0	0	0		ENST00000366641.3_1_1:231499868-231500177:-|nuORF	ENST00000366641.3_1_1:231499868-231500177:-|nuORF	ENST00000366641.3_1_1:231499868-231500177:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	456.60882568359375	2	456.784902	911.55525	-0.33023	-0.00015085	-0.20044	-9.1557E-05	-0.53067	-0.0002424	456.78478651871717	45.312	0.35503	46.078	45.846	46.201	0.76518					10	6	2	0	0	0	0.972	1	16887	16887		13.508	0	1	1401300			58913	11064	43002	43335	57444	57444					0.09593483888318133
VLARSRLL	8	Unmodified	_VLARSRLL_					0	0	0			REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MULTI-SECPEP	A375_MHC_IP_R1	1	464.7084045410156	2	464.308544	926.602535	-0.11112	-5.1596E-05	-0.13961	-6.4822E-05	-0.25073	-0.00011642	464.30839407456403	54.389	0.40687	54.389	54.263	54.67	0					12	7	2	0	0	0	0.93416	1	19448	19448		14.582	0	1	2718500	+		58914	16564	43003	43336	57445	57445					0.13629763159326558
VLASALQLL	9	Unmodified	_VLASALQLL_					0	0	0		APOF|p.A144V|1|0.22|ENSG00000175336|chr12:56361775-56361775|G/A|missense_variant	APOF|p.A144V|1|0.22|ENSG00000175336|chr12:56361775-56361775|G/A|missense_variant	APOF|p.A144V|1|0.22|ENSG00000175336|chr12:56361775-56361775|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	464.6969299316406	2	464.29731	926.580068	-0.42686	-0.00019819	0.17388	8.0732E-05	-0.25298	-0.00011746	464.29733743100735	66.465	0.40845	66.465	66.224	66.632	0					12	7	2	0	0	0	0.05754	1	24080	24080		61.357	6.5839	1	1579100			58915	162	43004	43337	57446	57446					0.11384118971056978
VLASDFHLQE	10	Unmodified	_VLASDFHLQE_					0	0	0		ENSG00000172869|ENST00000539542|DMXL1;nc|ENSG00000172869|Q9Y485|DMXL1	ENSG00000172869|ENST00000539542|DMXL1	ENSG00000172869|ENST00000539542|DMXL1	MSMS	A375_MHC_IP_R1	1	579.7245483398438	2	579.793121	1157.57169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.508	1	76.508	76.008	77.008	0								0	0	0	0.14601	1	27890	27890		25.399	1.3787	1				58916	7739	43005	43338	57447	57447					-0.0007947973624595761
VLASGAVGGPR	11	Unmodified	_VLASGAVGGPR_					0	0	0			REV__nc|ENSG00000119946|Q9NRU3-2|CNNM1	REV__nc|ENSG00000119946|Q9NRU3-2|CNNM1	MULTI-MSMS	A375_MHC_IP_R1	1	492.6861267089844	2	492.285266	982.555979	-0.54649	-0.00026903	0.45496	0.00022397	-0.091532	-4.506E-05	492.28537606042374	130.08	1.371	130.08	129.45	130.82	0					51	26	4	0	0	0	0.73078	1	50020	50020		8.1555	0.54658	1	183980000	+		58917	18106	43006	43339	57448	57448					0.06400278537387294
VLASGAVGGPR	11	Unmodified	_VLASGAVGGPR_					0	0	0			REV__nc|ENSG00000119946|Q9NRU3-2|CNNM1	REV__nc|ENSG00000119946|Q9NRU3-2|CNNM1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	492.285266	982.555979	-0.54649	-0.00026903	0.45496	0.00022397	-0.091532	-4.506E-05	492.28537606042374	130.08	1.371	130.08	129.45	130.82	0	-0.019391	0.00023211	NaN	8.1555	51	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183980000	+		58918	18106	43006	43339							0.06400278537387294
VLASGAVGGPR	11	Unmodified	_VLASGAVGGPR_					0	0	0			REV__nc|ENSG00000119946|Q9NRU3-2|CNNM1	REV__nc|ENSG00000119946|Q9NRU3-2|CNNM1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	492.285266	982.555979	-0.54265	-0.00026714	-0.008408	-4.1391E-06	-0.55106	-0.00027128	492.28514361079465	129.91	1.8218	130.12	129.39	131.21	0.2142	0.019391	-0.00022411	NaN	8.1555	68	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121960000	+		58919	18106	43006	43339							0.06400278537387294
VLASTPRR	8	Unmodified	_VLASTPRR_					0	0	0		ENST00000298743.8_1_9:89560559-89560607:-|nuORF	ENST00000298743.8_1_9:89560559-89560607:-|nuORF	ENST00000298743.8_1_9:89560559-89560607:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	450.67486572265625	2	450.274701	898.534849	-0.32865	-0.00014798	0.90334	0.00040675	0.57469	0.00025877	450.2749999640742	129.47	1.1669	129.47	129.25	130.41	0					60	22	4	0	0	0	0.7779	1	49763	49763		2.5775	0	1	145450000			58920	10523	43007	43340	57449	57449					0.08152313228526964
VLATGSGIVI	10	Unmodified	_VLATGSGIVI_					0	0	0		nc|ENSG00000167695|Q8TBR7-1|TLCD3A;ENST00000570699.1_1_17:636236-644807:+|nuORF;ENSG00000167695|ENST00000308278|TLCD3A	nc|ENSG00000167695|Q8TBR7-1|TLCD3A	nc|ENSG00000167695|Q8TBR7-1|TLCD3A	MULTI-SECPEP	A375_MHC_IP_R1	1	465.6867370605469	2	465.286943	928.559333	-0.30739	-0.00014302	-0.23891	-0.00011116	-0.5463	-0.00025419	465.286843446547	76.565	0.66115	76.565	76.319	76.981	0					17	12	2	0	0	0	0.64716	1	27913	27913		29.082	0.58707	1	1882400			58921	14750	43008	43341	57450	57450					0.09219528591370363
VLAVERKASV	10	Unmodified	_VLAVERKASV_					0	0	0		ENST00000381486.6_1_2:11706770-11716547:+|nuORF	ENST00000381486.6_1_2:11706770-11716547:+|nuORF	ENST00000381486.6_1_2:11706770-11716547:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	358.28399658203125	3	357.888874	1070.64479	-0.63278	-0.00022646	0.50498	0.00018073	-0.12779	-4.5736E-05	357.88896106223126	26.018	0.50812	26.678	26.5	27.008	0.65992					14	9	2	0	0	0	0.51689	1	8831	8831		27.088	2.2068	1	2001400			58922	11377	43009	43342	57451	57451					0.11229693777045213
VLAVTEGSKIR	11	Unmodified	_VLAVTEGSKIR_					0	0	0			REV__ENSG00000004846|ENST00000404938|ABCB5	REV__ENSG00000004846|ENST00000404938|ABCB5	MULTI-SECPEP	A375_MHC_IP_R2	2	391.8417663574219	3	391.571434	1171.69247	-0.44627	-0.00017475	0.83303	0.00032619	0.38676	0.00015144	391.57160978197226	18.932	0.18035	19.535	19.452	19.633	0.60308					6	3	2	0	0	0	0.99681	1	5654	5654		2.4348	0	1	4620100	+		58923	16101	43010	43343	57452	57452					0.11349347977238722
VLAWGLLNV	9	Unmodified	_VLAWGLLNV_					0	0	0		nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-4|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-2|TMEM209	nc|ENSG00000146842|Q96SK2-2|TMEM209	MULTI-SECPEP	A375_MHC_IP_R1	1	985.0548095703125	1	984.587679	983.580402	-0.072033	-7.0923E-05	-1.0802	-0.0010636	-1.1522	-0.0011345	984.5867948710924	132.51	0.2043	132.51	132.38	132.59	0					5	3	2	0	0	0	0.14105	1	51125	51125		50.855	14.389	1	4388000			58924	5642	43011	43344	57453	57453					0.08795538690912963
VLAWGLLNV	9	Unmodified	_VLAWGLLNV_					0	0	0		nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-4|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-2|TMEM209	nc|ENSG00000146842|Q96SK2-2|TMEM209	MULTI-MATCH	A375_MHC_IP_R2	2		1	984.587679	983.580402	0.040486	3.9862E-05	-0.95857	-0.00094379	-0.91808	-0.00090393	984.5868920758389	132.31	0.15457	132.5	132.4	132.56	0.18954	-0.0059925	3.6202E-05	NaN	50.855	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3401200			58925	5642	43011	43344							0.08795538690912963
VLCCVVLCLL	10	Unmodified	_VLCCVVLCLL_					0	0	0		nc|ENSG00000211746|A0A075B6N1|TRBV19	nc|ENSG00000211746|A0A075B6N1|TRBV19	nc|ENSG00000211746|A0A075B6N1|TRBV19	MULTI-SECPEP	A375_MHC_IP_R2	2	539.5477294921875	2	539.297084	1076.57962	-0.84224	-0.00045422	-1.0891	-0.00058732	-1.9313	-0.0010415	539.2963050448976	83.062	0.45387	83.801	83.595	84.049	0.73962					12	8	2	0	0	0	0.8716	1	31651	31651		12.532	0	1	1951600			58926	14876	43012	43345	57454	57454					0.04438916663661985
VLCEAESRVL	10	Unmodified	_VLCEAESRVL_					0	0	0		DDI1|p.P41L|1|0.55|ENSG00000170967|chr11:104036944-104036944|C/T|missense_variant	DDI1|p.P41L|1|0.55|ENSG00000170967|chr11:104036944-104036944|C/T|missense_variant	DDI1|p.P41L|1|0.55|ENSG00000170967|chr11:104036944-104036944|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	560.1823120117188	2	559.797349	1117.58014	-0.54042	-0.00030252	-3.3274	-0.0018626	-3.8678	-0.0021652	559.7973581459837	94.108	0.30048	94.108	93.89	94.191	0					6	5	2	0	0	0	0.91556	1	34604	34604		6.2058	1.4498	1	372570			58927	722	43013	43346	57455	57455					0.02605750908742266
VLCFDHISR	9	Unmodified	_VLCFDHISR_					0	0	0			REV__ENSG00000167642|ENST00000301244|SPINT2	REV__ENSG00000167642|ENST00000301244|SPINT2	MULTI-MSMS	A375_MHC_IP_R1	1	364.2552185058594	3	363.855176	1088.5437	0.0098464	3.5827E-06	-0.19797	-7.2033E-05	-0.18813	-6.8451E-05	363.8550932151947	28.075	0.65432	28.075	27.836	28.491	0					24	12	3	0	0	0	0.38603	2	8612	8612;8631		18.373	0	1	8677300	+		58928	20781	43014	43347	57456;57457	57456					0.002969188026554548
VLCLFLCLRM	10	Unmodified	_VLCLFLCLRM_					0	0	0			REV__CON__Q9N2I2	REV__CON__Q9N2I2	MULTI-SECPEP	A375_MHC_IP_R1	1	403.65570068359375	3	404.221814	1209.64361	-0.50205	-0.00020294	-0.81027	-0.00032753	-1.3123	-0.00053047	404.2212921878625	61.232	0.25608	61.232	61.126	61.382	0					8	4	2	0	0	0	0.94311	1	22098	22098		2.086	1.3883	1	753670	+	+	58929	15901	43015	43348	57458	57458					0.04717696820580386
VLCLFLCLRM	10	Unmodified	_VLCLFLCLRM_					0	0	0			REV__CON__Q9N2I2	REV__CON__Q9N2I2	MULTI-MATCH	A375_MHC_IP_R2	2		3	404.221814	1209.64361	-0.29108	-0.00011766	-1.7874	-0.00072252	-2.0785	-0.00084018	404.5553711922465	60.363	0.35933	61.108	60.903	61.263	0.74504	-0.06189	-0.00047011	NaN	2.086	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1132200	+	+	58930	15901	43015	43348							0.04717696820580386
VLDASKGLLN	10	Unmodified	_VLDASKGLLN_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-SECPEP	A375_MHC_IP_R2	2	515.6442260742188	2	515.300581	1028.58661	-1.0848	-0.00055901	0.43626	0.0002248	-0.64856	-0.0003342	515.3008412126992	51.95	0.55895	52.702	52.473	53.032	0.75225					23	10	3	0	0	0	0.37302	1	19590	19590		40.239	12.61	1	3739700			58931	3923	43016	43349	57459	57459					0.07346012131779389
VLDASNQISVY	11	Unmodified	_VLDASNQISVY_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	MULTI-MSMS	A375_MHC_IP_R1	1	605.2113037109375	2	604.81151	1207.60847	-0.33321	-0.00020153	1.0429	0.00063076	0.7097	0.00042924	604.811707799939	79.702	0.5651	79.702	79.418	79.983	0					14	10	2	0	0	0	0.62292	1	29122	29122		21.537	9.2963	1	1379200			58932	1487	43017	43350	57460	57460					0.012967720896767787
VLDASNQISVY	11	Unmodified	_VLDASNQISVY_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	MULTI-MATCH	A375_MHC_IP_R2	2		2	604.81151	1207.60847	-0.34739	-0.0002101	0.23147	0.00014	-0.11592	-7.0107E-05	604.8111384897772	79.025	0.40584	79.77	79.591	79.997	0.74474	0.034167	-0.00056611	NaN	21.537	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1126900			58933	1487	43017	43350							0.012967720896767787
VLDASVKEV	9	Unmodified	_VLDASVKEV_					0	0	0		ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	480.673828125	2	480.274032	958.533512	-0.51839	-0.00024897	-1.1472	-0.00055096	-1.6656	-0.00079993	480.2738129583302	40.059	0.40882	40.059	39.794	40.203	0					14	7	3	0	0	0	0.20059	1	13783	13783		59.368	7.1	1	2713700			58934	4255	43018	43351	57461	57461					0.05258634349104341
VLDDEDSNNI	10	Unmodified	_VLDDEDSNNI_					0	0	0		ENSG00000025796|ENST00000369002|SEC63;ENST00000425785.1_1_1:98011504-98011909:+|nuORF	ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	MULTI-SECPEP	A375_MHC_IP_R1	1	566.7235717773438	2	567.251482	1132.48841	0.097388	5.5243E-05	2.6611	0.0015095	2.7585	0.0015648	567.7526484962613	113.36	0.20397	113.36	113.24	113.45	0					5	3	2	0	0	0	0.90853	1	41518	41518		6.7232	0	1	2405500			58935	1091	43019	43352	57462	57462					-0.07253260974766818
VLDDKDYFL	9	Unmodified	_VLDDKDYFL_					0	0	0		ENST00000550617.1_1_12:102267096-102267252:-|nuORF;ENST00000465573.1_1_2:198365552-198367980:+|nuORF;ENSG00000115541|ENST00000233893|HSPE1	ENST00000550617.1_1_12:102267096-102267252:-|nuORF	ENST00000550617.1_1_12:102267096-102267252:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	564.6842041015625	2	564.284597	1126.55464	-0.48395	-0.00027308	-0.18458	-0.00010415	-0.66853	-0.00037724	564.2844946596709	87.319	0.81454	87.319	86.933	87.747	0					43	15	4	0	0	0	0.11887	1	31989	31989		71.708	31.758	1	16149000			58936	3320	43020	43353	57463	57463					-0.003574003420453664
VLDDKGNIIGY	11	Unmodified	_VLDDKGNIIGY_					0	0	0		ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	MULTI-SECPEP	A375_MHC_IP_R1	1	604.2224731445312	2	603.821878	1205.6292	-0.46327	-0.00027973	0.35793	0.00021612	-0.10534	-6.3607E-05	603.8221268729596	65.405	0.51045	65.405	65.156	65.666	0					15	9	2	0	0	0	0.065145	1	23661	23661		81.915	45.409	1	4149300			58937	1616	43021	43354	57464	57464					0.03461362469329288
VLDDKGNIIGY	11	Unmodified	_VLDDKGNIIGY_					0	0	0		ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	MULTI-SECPEP	A375_MHC_IP_R2	2	604.2216796875	2	603.821878	1205.6292	-0.42618	-0.00025734	0.16503	9.9648E-05	-0.26115	-0.00015769	603.8216474748538	64.69	0.45802	65.431	65.208	65.666	0.74022					18	8	3	0	0	0	0.040588	1	24519	24519		97.741	61.614	1	3915400			58938	1616	43021	43354	57465	57465					0.03461362469329288
VLDDKLVFV	9	Unmodified	_VLDDKLVFV_					0	0	0		nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6;ENST00000426898.2_1_12:45610123-45776982:+|nuORF	nc|ENSG00000177119|Q4KMQ2-3|ANO6	nc|ENSG00000177119|Q4KMQ2-3|ANO6	MULTI-MSMS	A375_MHC_IP_R1	1	524.708251953125	2	524.307875	1046.6012	-0.4285	-0.00022466	0.091921	4.8195E-05	-0.33658	-0.00017647	524.3078956817443	97.87	1.9325	97.87	97.49	99.422	0					72	37	2	0	0	0	0.22013	1	36336	36336		36.506	4.2007	1	97202000			58939	8063	43022	43355	57466	57466					0.07976084279880524
VLDDKLYVV	9	Unmodified	_VLDDKLYVV_					0	0	0		nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	MULTI-MSMS	A375_MHC_IP_R1	1	532.705322265625	2	532.305332	1062.59611	-0.44994	-0.0002395	0.17447	9.2873E-05	-0.27546	-0.00014663	532.3053809098939	78.833	1.8853	78.833	78.454	80.34	0					75	36	4	0	0	0	0.012447	1	28716	28716		93.166	45.417	1	67555000			58940	2893	43023	43356	57467	57467					0.06731780417271693
VLDDKLYVV	9	Unmodified	_VLDDKLYVV_					0	0	0		nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	MULTI-SECPEP	A375_MHC_IP_R2	2	532.7047119140625	2	532.305332	1062.59611	-0.68018	-0.00036207	-0.0022019	-1.1721E-06	-0.68239	-0.00036324	532.3052674389975	78.009	2.1892	78.752	78.365	80.555	0.74293					87	42	5	0	0	0	0.03341	1	29586	29586		103.42	47.242	1	67473000			58941	2893	43023	43356	57468	57468					0.06731780417271693
VLDEADLSRY	10	Unmodified	_VLDEADLSRY_					0	0	0		nc|ENSG00000204970|Q9Y5I3-3|PCDHA1;ENSG00000204970|ENST00000504120|PCDHA1	nc|ENSG00000204970|Q9Y5I3-3|PCDHA1	nc|ENSG00000204970|Q9Y5I3-3|PCDHA1	MULTI-SECPEP	A375_MHC_IP_R2	2	591.1952514648438	2	590.79586	1179.57717	-0.86001	-0.00050809	-0.18248	-0.00010781	-1.0425	-0.0006159	590.795749113708	60.581	0.56069	61.326	60.955	61.515	0.74503					23	10	3	0	0	0	0.24248	1	22939	22939		68.76	23.02	1	2730600			58942	9492	43024	43357	57469	57469					-0.005438009444333147
VLDEAFQRY	9	Unmodified	_VLDEAFQRY_					0	0	0		ENSG00000213614|ENST00000268097|HEXA;ENST00000563908.1_1_15:72647792-72668286:-|nuORF;ENST00000569509.5_1_15:72643558-72668681:-|nuORF	ENSG00000213614|ENST00000268097|HEXA	ENSG00000213614|ENST00000268097|HEXA	MULTI-MSMS	A375_MHC_IP_R1	1	571.187744140625	2	570.787838	1139.56112	-0.35571	-0.00020304	0.009066	5.1748E-06	-0.34665	-0.00019786	570.7877865801198	58.811	0.61143	58.811	58.582	59.194	0					20	11	2	0	0	0	0.021859	1	21118	21118		99.755	52.007	1	16173000			58943	9574	43025	43358	57470	57470					-0.003074623906513807
VLDEAGSTV	9	Unmodified	_VLDEAGSTV_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-MSMS	A375_MHC_IP_R2	2	891.3626708984375	1	890.446553	889.439277	-0.41667	-0.00037102	-0.30316	-0.00026995	-0.71983	-0.00064097	890.4463254217945	42.112	0.56112	42.884	42.656	43.218	0.7724					23	10	3	0	0	0	0.070818	1	15696	15696		56.177	23.391	1	8507300			58944	5536	43026	43359	57471	57471					-0.009865044730304362
VLDEAGSTV	9	Unmodified	_VLDEAGSTV_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-MATCH	A375_MHC_IP_R1	1		1	890.446553	889.439277	0.011073	9.86E-06	-0.72792	-0.00064818	-0.71685	-0.00063832	890.4461800915005	42.895	0.76082	42.895	42.436	43.197	0	0.0051913	-0.0003026	NaN	56.177	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7763000			58945	5536	43026	43359							-0.009865044730304362
VLDEAIVDAVP	11	Unmodified	_VLDEAIVDAVP_					0	0	0			REV__ENSG00000169026|ENST00000322224|SLC49A3	REV__ENSG00000169026|ENST00000322224|SLC49A3	MULTI-MSMS	A375_MHC_IP_R1	1	381.27667236328125	3	380.876411	1139.6074	0.33244	0.00012662	1.7904	0.00068194	2.1229	0.00080856	380.8763582042698	31.957	0.86889	31.957	31.514	32.383	0					52	16	5	0	0	0	0.4583	1	10178	10178		21.799	0.92833	1	19126000	+		58946	20900	43027	43360	57472	57472					0.04318557720762328
VLDEAIVDAVP	11	Unmodified	_VLDEAIVDAVP_					0	0	0			REV__ENSG00000169026|ENST00000322224|SLC49A3	REV__ENSG00000169026|ENST00000322224|SLC49A3	MULTI-MSMS	A375_MHC_IP_R2	2	381.2763671875	3	380.876411	1139.6074	-0.056935	-2.1685E-05	1.9238	0.00073275	1.8669	0.00071106	380.8763970079249	31.091	0.7645	31.81	31.467	32.231	0.71857					47	14	5	0	0	0	0.4583	1	10914	10914		21.799	0.92833	1	22867000	+		58947	20900	43027	43360	57473	57473					0.04318557720762328
VLDEAIVDAVP	11	Unmodified	_VLDEAIVDAVP_					0	0	0			REV__ENSG00000169026|ENST00000322224|SLC49A3	REV__ENSG00000169026|ENST00000322224|SLC49A3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	380.876411	1139.6074	0.33244	0.00012662	1.7904	0.00068194	2.1229	0.00080856	380.8763582042698	31.957	0.86889	31.957	31.514	32.383	0	0.073826	-6.5351E-05	NaN	21.799	52	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19126000	+		58948	20900	43027	43360							0.04318557720762328
VLDEKEAGVLY	11	Unmodified	_VLDEKEAGVLY_					0	0	0			REV__tr|U7T503|U7T503_FUSNURNApolymerasesigmafactorSigSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00623PE=3SV=1	REV__tr|U7T503|U7T503_FUSNURNApolymerasesigmafactorSigSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00623PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	618.7295532226562	2	618.329536	1234.64452	-0.37114	-0.00022949	-0.062204	-3.8462E-05	-0.43335	-0.00026795	618.3293963306443	73.771	0.45584	73.771	73.539	73.995	0					19	8	3	0	0	0	0.49853	1	26875	26875		51.488	23.254	1	3627100	+		58949	28812	43028	43361	57474	57474					0.03658229266534363
VLDELKHYY	9	Unmodified	_VLDELKHYY_					0	0	0		ENSG00000168924|ENST00000302787|LETM1;nc|ENSG00000168924|O95202-2|LETM1;ENST00000505551.5_1_4:1836565-1844755:-|nuORF;nc|ENSG00000168924|O95202-3|LETM1;ENST00000466175.5_1_4:1836565-1857677:-|nuORF	ENSG00000168924|ENST00000302787|LETM1	ENSG00000168924|ENST00000302787|LETM1	MULTI-SECPEP	A375_MHC_IP_R2	2	394.2728576660156	3	393.873001	1178.59717	-0.52347	-0.00020618	0.5473	0.00021557	0.023825	9.3841E-06	393.8731746589787	57.346	0.61314	58.095	57.814	58.427	0.74894					16	11	2	0	0	0	0.39273	1	21736	21736		37.075	28.098	1	2052700			58950	7361	43029	43362	57475	57475					0.015019947861901528
VLDELKHYY	9	Unmodified	_VLDELKHYY_					0	0	0		ENSG00000168924|ENST00000302787|LETM1;nc|ENSG00000168924|O95202-2|LETM1;ENST00000505551.5_1_4:1836565-1844755:-|nuORF;nc|ENSG00000168924|O95202-3|LETM1;ENST00000466175.5_1_4:1836565-1857677:-|nuORF	ENSG00000168924|ENST00000302787|LETM1	ENSG00000168924|ENST00000302787|LETM1	MULTI-MATCH	A375_MHC_IP_R1	1		3	393.873001	1178.59717	-0.0015817	-6.2298E-07	-0.10562	-4.1601E-05	-0.1072	-4.2224E-05	394.2072572697908	58.203	0.45528	58.203	57.873	58.328	0	0.053951	-0.00034854	NaN	37.075	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1931100			58951	7361	43029	43362							0.015019947861901528
VLDELTLAR	9	Unmodified	_VLDELTLAR_					0	0	0		CON__P02533;ENSG00000186847|ENST00000167586|KRT14;CON__P08779;ENSG00000186832|ENST00000301653|KRT16;KRT16|p.R224C|1|0.18|ENSG00000186832|chr17:41611446-41611446|G/A|missense_variant;ENST00000417510.5_1_17:16723272-16723344:-|nuORF;CON__A2A4G1;CON__Q6IFX2;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;CON__P19001;CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;ENST00000468880.1_1_17:39680334-39681232:-|nuORF;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;ENSG00000171346|ENST00000254043|KRT15;CON__P19012	CON__P02533;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;nc|ENSG00000171346|P19012-2|KRT15	ENST00000414673.5_1_17:16734454-16736059:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	514.65087890625	2	515.300581	1028.58661	-0.89185	-0.00045957	0.97074	0.00050022	0.078889	4.0651E-05	515.300992343153	67.701	0.60741	67.701	67.297	67.904	0					15	11	2	0	0	0	0.50484	1	24523	24523		28.495	6.9575	1	929750		+	58952	580;11669;597	43030	43363	57476	57476					0.07346012131756652
VLDENYNNL	9	Unmodified	_VLDENYNNL_					0	0	0		ENSG00000120054|ENST00000370418|CPN1;CPN1|p.G344E|1|0.31|ENSG00000120054|chr10:100054427-100054427|C/T|missense_variant	ENSG00000120054|ENST00000370418|CPN1	ENSG00000120054|ENST00000370418|CPN1	MULTI-MSMS	A375_MHC_IP_R1	1	547.13623046875	2	547.261653	1092.50875	-0.5204	-0.0002848	-0.39813	-0.00021788	-0.91853	-0.00050268	547.261462766382	63.798	0.56285	63.798	63.477	64.04	0					23	10	3	0	0	0	0.22528	1	23011	23011		36.127	12.106	1	4275300		+	58953	3646	43031	43364	57477	57477					-0.03380045524295383
VLDENYNNL	9	Unmodified	_VLDENYNNL_					0	0	0		ENSG00000120054|ENST00000370418|CPN1;CPN1|p.G344E|1|0.31|ENSG00000120054|chr10:100054427-100054427|C/T|missense_variant	ENSG00000120054|ENST00000370418|CPN1	ENSG00000120054|ENST00000370418|CPN1	MULTI-MSMS	A375_MHC_IP_R2	2	547.1367797851562	2	547.261653	1092.50875	-0.74136	-0.00040572	-0.044499	-2.4353E-05	-0.78586	-0.00043007	547.2615716222491	63.184	0.60905	63.927	63.584	64.193	0.74263					22	11	3	0	0	0	0.010171	1	23942	23942		96.111	52.253	1	4173800		+	58954	3646	43031	43364	57478	57478					-0.03380045524295383
VLDERSALY	9	Unmodified	_VLDERSALY_					0	0	0		ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MULTI-SECPEP	A375_MHC_IP_R1	1	533.6822509765625	2	533.282389	1064.55022	-0.65963	-0.00035177	-0.13077	-6.9738E-05	-0.7904	-0.00042151	533.2823001864617	50.587	0.76175	50.587	50.204	50.966	0					26	14	3	0	0	0	0.23313	1	17914	17914		57.249	26.613	1	7270600			58955	3043	43032	43365	57479	57479					0.020531352350417365
VLDERSALY	9	Unmodified	_VLDERSALY_					0	0	0		ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MULTI-SECPEP	A375_MHC_IP_R2	2	533.6819458007812	2	533.282389	1064.55022	-0.9814	-0.00052337	0.0012669	6.756E-07	-0.98014	-0.00052269	533.2824568622347	49.898	0.56052	50.652	50.394	50.955	0.75406					26	10	3	0	0	0	0.41731	1	18737	18737		35.612	10.213	1	6121500			58956	3043	43032	43365	57480	57480					0.020531352350417365
VLDETRTAY	9	Unmodified	_VLDETRTAY_					0	0	0		ASCC2|p.S384L|1|0.29|ENSG00000100325|chr22:29806225-29806225|G/A|missense_variant;nc|ENSG00000100325|Q9H1I8-2|ASCC2;ENST00000458594.5_1_22:30197094-30223519:-|nuORF;nc|ENSG00000100325|Q9H1I8-3|ASCC2;ENSG00000100325|ENST00000307790|ASCC2	ASCC2|p.S384L|1|0.29|ENSG00000100325|chr22:29806225-29806225|G/A|missense_variant	ASCC2|p.S384L|1|0.29|ENSG00000100325|chr22:29806225-29806225|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1746215820312	2	534.272021	1066.52949	-0.79	-0.00042208	0.73143	0.00039078	-0.058568	-3.1291E-05	534.2725058133518	32.108	0.96387	32.845	32.249	33.213	0.73691					27	18	2	0	0	0	0.33896	1	11372	11372		47.594	11.467	1	10507000			58957	189	43033	43366	57481	57481					-0.0011145514461077255
VLDGKVAVV	9	Unmodified	_VLDGKVAVV_					0	0	0		nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5;nc|ENSG00000134532|P35711-3|SOX5	nc|ENSG00000134532|P35711-2|SOX5	nc|ENSG00000134532|P35711-2|SOX5	MULTI-MSMS	A375_MHC_IP_R1	1	450.6818542480469	2	450.28166	898.548768	-0.15508	-6.9828E-05	0.077419	3.4861E-05	-0.077658	-3.4968E-05	450.28165266075115	52.326	1.929	52.326	51.829	53.758	0					109	37	5	0	0	0	0.015356	1	18542	18542		89.401	4.044	1	140800000			58958	4585	43034	43367	57482	57482					0.09543545936946884
VLDGKVAVV	9	Unmodified	_VLDGKVAVV_					0	0	0		nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5;nc|ENSG00000134532|P35711-3|SOX5	nc|ENSG00000134532|P35711-2|SOX5	nc|ENSG00000134532|P35711-2|SOX5	MULTI-MSMS	A375_MHC_IP_R2	2	450.68145751953125	2	450.28166	898.548768	-0.50918	-0.00022928	-0.093626	-4.2158E-05	-0.60281	-0.00027143	450.28157123455685	51.542	1.573	52.294	51.864	53.437	0.75225					88	30	5	0	0	0	0.015356	1	19316	19316		89.401	14.978	1	148400000			58959	4585	43034	43367	57483	57483					0.09543545936946884
VLDGPRQVFRY	11	Unmodified	_VLDGPRQVFRY_					0	0	0			REV__ENSG00000132510|ENST00000448097|KDM6B	REV__ENSG00000132510|ENST00000448097|KDM6B	MULTI-SECPEP	A375_MHC_IP_R2	2	675.7680053710938	2	675.369861	1348.72517	-0.84539	-0.00057095	-1.2015	-0.00081143	-2.0469	-0.0013824	675.3687549877553	66.411	0.76643	67.148	66.627	67.393	0.73631					17	14	2	0	0	0	0.98524	1	25181	25181		15.248	0.8431	1	2031800	+		58960	18659	43035	43368	57484	57484					0.06475555100064412
VLDGRELRV	9	Unmodified	_VLDGRELRV_					0	0	0		nc|ENSG00000161547|Q01130-2|SRSF2;ENSG00000161547|ENST00000359995|SRSF2	nc|ENSG00000161547|Q01130-2|SRSF2	nc|ENSG00000161547|Q01130-2|SRSF2	MULTI-MSMS	A375_MHC_IP_R1	1	353.2765808105469	3	352.876857	1055.60874	0.13028	4.5972E-05	-0.33547	-0.00011838	-0.2052	-7.2409E-05	352.8767313915768	42.764	0.6599	42.764	42.537	43.197	0					22	12	2	0	0	0	0.074562	1	14835	14835		55.235	14.995	1	24009000			58961	6477	43036	43369	57485	57485					0.08316236600194316
VLDGRELRV	9	Unmodified	_VLDGRELRV_					0	0	0		nc|ENSG00000161547|Q01130-2|SRSF2;ENSG00000161547|ENST00000359995|SRSF2	nc|ENSG00000161547|Q01130-2|SRSF2	nc|ENSG00000161547|Q01130-2|SRSF2	MULTI-SECPEP	A375_MHC_IP_R1	1	529.2113647460938	2	528.811648	1055.60874	-0.32211	-0.00017034	-0.43316	-0.00022906	-0.75527	-0.0003994	528.8114160579248	42.764	0.40537	42.764	42.587	42.993	0					13	7	2	0	0	0	0.4465	1	14860	14860		31.268	17.362	1	4709200			58962	6477	43036	43369	57486	57486					0.08316236600194316
VLDGRGRP	8	Unmodified	_VLDGRGRP_					0	0	0		ENSG00000131899|ENST00000316843|LLGL1	ENSG00000131899|ENST00000316843|LLGL1	ENSG00000131899|ENST00000316843|LLGL1	MULTI-MSMS	A375_MHC_IP_R2	2	435.6512756347656	2	435.251226	868.487899	-0.23922	-0.00010412	0.039225	1.7073E-05	-0.19999	-8.7047E-05	435.2511563360184	104.48	6.2587	105.24	102.77	109.03	0.76308					258	122	3	0	0	0	0.77781	1	38789	38789		2.8892	0	1	16931000			58963	4355	43037	43370	57487	57487					0.04839453677379879
VLDHKEFKA	9	Unmodified	_VLDHKEFKA_					0	0	0		ENSG00000181555|ENST00000409792|SETD2;nc|ENSG00000181555|Q9BYW2-2|SETD2	ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	MULTI-SECPEP	A375_MHC_IP_R2	2	543.7037353515625	2	543.800749	1085.58694	-1.1841	-0.00064394	0.21403	0.00011639	-0.97011	-0.00052755	543.8007977921752	56.531	0.50966	57.281	57	57.51	0.75015					14	9	2	0	0	0	0.50484	1	21357	21357		37.974	0	1	2365600			58964	8351	43038	43371	57488	57488					0.04757431851635374
VLDILLEQY	9	Unmodified	_VLDILLEQY_					0	0	0		nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	MULTI-MSMS	A375_MHC_IP_R1	1	553.7103881835938	2	553.310615	1104.60668	-0.37961	-0.00021004	-0.48071	-0.00026598	-0.86032	-0.00047602	553.3103219682307	128.22	1.6209	128.22	127.27	128.89	0					33	22	4	0	0	0	0.074562	1	49217	49217		69.105	1.0242	1	16451000			58965	14622	43039	43372	57489	57489					0.05855763071713227
VLDILLEQY	9	Unmodified	_VLDILLEQY_					0	0	0		nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	MULTI-MSMS	A375_MHC_IP_R1	1	1105.488037109375	1	1105.61395	1104.60668	0.24736	0.00027349	1.6806	0.0018581	1.928	0.0021316	1105.6147848261212	128.2	0.25424	128.2	128.07	128.33	0					8	4	3	0	0	0	0.66474	1	49263	49263		14.838	4.0143	1	10088000			58966	14622	43039	43372	57490	57490					0.05855763071713227
VLDILLEQY	9	Unmodified	_VLDILLEQY_					0	0	0		nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	MULTI-MSMS	A375_MHC_IP_R2	2	553.7103881835938	2	553.310615	1104.60668	-0.82898	-0.00045869	-0.75244	-0.00041634	-1.5814	-0.00087502	553.3104195032304	127.79	1.9277	128.05	127.16	129.09	0.26592					39	26	3	0	0	0	0.10637	2	50222	50222;50262		62.573	16.458	1	15732000			58967	14622	43039	43372	57491;57492	57491					0.05855763071713227
VLDIQNNLY	9	Unmodified	_VLDIQNNLY_					0	0	0		ENSG00000146232|ENST00000619360|NFKBIE;nc|ENSG00000146232|O00221|NFKBIE	ENSG00000146232|ENST00000619360|NFKBIE	ENSG00000146232|ENST00000619360|NFKBIE	MULTI-SECPEP	A375_MHC_IP_R2	2	546.2164916992188	2	546.290214	1090.56587	-0.71362	-0.00038984	-0.019684	-1.0753E-05	-0.7333	-0.0004006	546.2901826397	92.395	1.0613	93.134	92.585	93.646	0.73902					42	20	3	0	0	0	0.059859	1	35182	35182		62.573	10.943	1	5888900			58968	5611	43040	43373	57493	57493					0.02421421752092101
VLDKFEASI	9	Unmodified	_VLDKFEASI_					0	0	0		ENSG00000186184|ENST00000302979|POLR1D	ENSG00000186184|ENST00000302979|POLR1D	ENSG00000186184|ENST00000302979|POLR1D	MULTI-SECPEP	A375_MHC_IP_R2	2	511.1340637207031	2	511.281857	1020.54916	-0.64798	-0.0003313	0.23044	0.00011782	-0.41755	-0.00021348	511.28191930360936	90.645	0.55782	91.38	91.058	91.616	0.73451					18	10	3	0	0	0	0.69504	1	34427	34427		7.9102	3.5809	1	793570			58969	8725	43041	43374	57494	57494					0.03970920866152028
VLDKGGKS	8	Unmodified	_VLDKGGKS_					0	0	0		ENSG00000169609|ENST00000304177|C15orf40	ENSG00000169609|ENST00000304177|C15orf40	ENSG00000169609|ENST00000304177|C15orf40	MULTI-SECPEP	A375_MHC_IP_R2	2	802.9432373046875	1	803.462144	802.454868	-0.88937	-0.00071457	0.42915	0.0003448	-0.46022	-0.00036977	803.462411204282	131.31	0.46008	131.5	131.39	131.85	0.18953					10	8	2	0	0	0	0.8957	1	51776	51776		21.747	0	1	1968500			58970	7422	43042	43375	57495	57495					0.0457382683467813
VLDLDTHVV	9	Unmodified	_VLDLDTHVV_					0	0	0		ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	MULTI-SECPEP	A375_MHC_IP_R1	1	506.1795654296875	2	505.779482	1009.54441	-0.37658	-0.00019047	0.28613	0.00014472	-0.090448	-4.5747E-05	505.77957528765506	73.397	0.71017	73.397	73.082	73.792	0					22	13	2	0	0	0	0.1277	1	26717	26717		54.774	31.625	1	4667700			58971	8908	43043	43376	57496	57496					0.04002036723386482
VLDLDTHVV	9	Unmodified	_VLDLDTHVV_					0	0	0		ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	MULTI-SECPEP	A375_MHC_IP_R2	2	506.17913818359375	2	505.779482	1009.54441	-0.81454	-0.00041198	-0.13795	-6.9774E-05	-0.9525	-0.00048175	505.7793520745545	72.575	0.86452	73.31	73.022	73.887	0.73541					35	16	3	0	0	0	0.14422	1	27544	27544		61.357	25.313	1	5340500			58972	8908	43043	43376	57497	57497					0.04002036723386482
VLDLEPKAV	9	Unmodified	_VLDLEPKAV_					0	0	0		ENSG00000121058|ENST00000240316|COIL	ENSG00000121058|ENST00000240316|COIL	ENSG00000121058|ENST00000240316|COIL	MULTI-SECPEP	A375_MHC_IP_R2	2	492.5755615234375	2	492.292225	982.569897	-0.68227	-0.00033588	-0.25286	-0.00012448	-0.93513	-0.00046036	492.29205917344615	62.191	0.45674	62.933	62.774	63.23	0.74263					12	8	2	0	0	0	0.40377	1	23594	23594		34.932	3.6637	1	1216200			58973	3704	43044	43377	57498	57498					0.07791511245795846
VLDLEPKAV	9	Unmodified	_VLDLEPKAV_					0	0	0		ENSG00000121058|ENST00000240316|COIL	ENSG00000121058|ENST00000240316|COIL	ENSG00000121058|ENST00000240316|COIL	MULTI-MATCH	A375_MHC_IP_R1	1		2	492.292225	982.569897	-0.25187	-0.00012399	0.13561	6.676E-05	-0.11626	-5.7234E-05	492.29222551840434	63.043	0.30974	63.043	62.863	63.173	0	0.05482	0.00022497	NaN	34.932	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1192000			58974	3704	43044	43377							0.07791511245795846
VLDLMDCCD	9	Unmodified	_VLDLMDCCD_					0	0	0		ENST00000404127.6_1_X:153173185-153186849:-|nuORF;ENSG00000089820|ENST00000350060|ARHGAP4;nc|ENSG00000089820|P98171-2|ARHGAP4	ENST00000404127.6_1_X:153173185-153186849:-|nuORF	ENST00000404127.6_1_X:153173185-153186849:-|nuORF	MSMS	A375_MHC_IP_R2	2	513.7029418945312	2	513.700671	1025.38679	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.783	1	69.518	69.018	70.018	0.73511								0	0	0	0.15486	1	26064	26064		7.9102	3.1541	1				58975	1936	43045	43378	57499	57499					-0.12488870194169976
VLDNGILSY	9	Unmodified	_VLDNGILSY_					0	0	0		ENST00000598554.1_1_19:42027644-42028339:-|nuORF;ENSG00000116095|ENST00000234453|PLEKHA3	ENST00000598554.1_1_19:42027644-42028339:-|nuORF	ENST00000598554.1_1_19:42027644-42028339:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	497.6769714355469	2	497.266207	992.517862	-0.68476	-0.00034051	0.20811	0.00010349	-0.47665	-0.00023702	497.26624016235786	97.013	0.40502	97.768	97.569	97.974	0.75586					12	7	2	0	0	0	0.14922	1	36842	36842		41.84	5.7126	1	1529900			58976	3366	43046	43379	57500	57500					0.021303478320646718
VLDNLSRNIY	10	Unmodified	_VLDNLSRNIY_					0	0	0			REV__ENSG00000178750|ENST00000315099|STX19	REV__ENSG00000178750|ENST00000315099|STX19	MULTI-SECPEP	A375_MHC_IP_R1	1	604.2267456054688	2	603.827495	1205.64044	-0.39533	-0.00023871	-0.42559	-0.00025698	-0.82091	-0.00049569	603.8272488841671	61.305	0.30718	61.305	61.176	61.483	0					9	5	2	0	0	0	0.8528	1	22131	22131		21.537	11.463	1	1791600	+		58977	21516	43047	43380	57501	57501					0.04584184563486815
VLDNLSRNIY	10	Unmodified	_VLDNLSRNIY_					0	0	0			REV__ENSG00000178750|ENST00000315099|STX19	REV__ENSG00000178750|ENST00000315099|STX19	MULTI-SECPEP	A375_MHC_IP_R2	2	604.2269897460938	2	603.827495	1205.64044	-0.74879	-0.00045214	-0.11814	-7.1337E-05	-0.86693	-0.00052348	603.8275157573344	60.535	0.56069	61.28	60.955	61.515	0.74503					13	10	2	0	0	0	0.8125	1	22944	22944		24.021	5.8742	1	1521100	+		58978	21516	43047	43380	57502	57502					0.04584184563486815
VLDPKSTIV	9	Unmodified	_VLDPKSTIV_					0	0	0		nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	MULTI-SECPEP	A375_MHC_IP_R1	1	486.6922302246094	2	486.292225	970.569897	-0.28407	-0.00013814	-0.11573	-5.628E-05	-0.3998	-0.00019442	486.2920854641272	52.464	0.65923	52.464	52.085	52.744	0					28	12	3	0	0	0	0.20451	1	18617	18617		57.722	9.9733	1	8316200			58979	9299	43048	43381	57503	57503					0.08343511245823265
VLDPKSTIV	9	Unmodified	_VLDPKSTIV_					0	0	0		nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	MULTI-SECPEP	A375_MHC_IP_R2	2	486.69195556640625	2	486.292225	970.569897	-0.85091	-0.00041379	0.0049852	2.4243E-06	-0.84592	-0.00041137	486.29215824125873	51.656	0.86445	52.409	52.017	52.882	0.75225					29	16	3	0	0	0	0.11849	1	19428	19428		61.602	5.4249	1	7541100			58980	9299	43048	43381	57504	57504					0.08343511245823265
VLDPYLLKY	9	Unmodified	_VLDPYLLKY_					0	0	0		ENSG00000239789|ENST00000285298|MRPS17	ENSG00000239789|ENST00000285298|MRPS17	ENSG00000239789|ENST00000285298|MRPS17	MULTI-SECPEP	A375_MHC_IP_R1	1	562.9678955078125	2	562.323525	1122.6325	-0.28823	-0.00016208	0.13815	7.7684E-05	-0.15008	-8.4394E-05	562.3235245505816	92.237	1.1673	92.237	91.906	93.074	0					68	22	5	0	0	0	0.1952	1	33933	33933		75.761	20.987	1	54399000			58981	9767	43049	43382	57505	57505					0.07608657313994627
VLDPYLLKY	9	Unmodified	_VLDPYLLKY_					0	0	0		ENSG00000239789|ENST00000285298|MRPS17	ENSG00000239789|ENST00000285298|MRPS17	ENSG00000239789|ENST00000285298|MRPS17	MSMS	A375_MHC_IP_R2	2	562.2915649414062	2	562.323525	1122.6325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.183	1	95.933	95.433	96.433	0.75045								0	0	0	0.1535	1	36161	36161		15.847	0	1				58982	9767	43049	43382	57506	57506					0.07608657313994627
VLDPYLLKY	9	Unmodified	_VLDPYLLKY_					0	0	0		ENSG00000239789|ENST00000285298|MRPS17	ENSG00000239789|ENST00000285298|MRPS17	ENSG00000239789|ENST00000285298|MRPS17	MULTI-SECPEP	A375_MHC_IP_R2	2	562.5745239257812	2	562.323525	1122.6325	-0.47014	-0.00026437	0.054698	3.0758E-05	-0.41545	-0.00023362	562.3234798034647	91.42	1.2675	92.154	91.868	93.135	0.73451					68	24	5	0	0	0	0.13199	1	34782	34782		75.761	19.584	1	48939000			58983	9767	43049	43382	57507	57507					0.07608657313994627
VLDQGKITEY	10	Unmodified	_VLDQGKITEY_					0	0	0		ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	MULTI-SECPEP	A375_MHC_IP_R1	1	583.708251953125	2	583.308603	1164.60265	0.015564	9.0788E-06	0.024483	1.4281E-05	0.040047	2.336E-05	583.3085805770595	45.507	0.80898	45.507	45.234	46.043	0					43	15	4	0	0	0	0.052259	1	15899	15899		108.26	53.488	1	22083000			58984	4713	43050	43383	57508	57508					0.026936735780054732
VLDQGKITEY	10	Unmodified	_VLDQGKITEY_					0	0	0		ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	MULTI-MSMS	A375_MHC_IP_R2	2	584.2097778320312	2	583.308603	1164.60265	-0.55074	-0.00032125	0.22803	0.00013301	-0.32272	-0.00018824	583.3086516646488	44.816	0.71259	45.585	45.239	45.951	0.76909					40	13	5	0	0	0	0.022052	1	16703	16703		104.48	62.645	1	17167000			58985	4713	43050	43383	57509	57509					0.026936735780054732
VLDQLSKNI	9	Unmodified	_VLDQLSKNI_					0	0	0		ENST00000508918.5_1_4:16504706-16675844:-|nuORF;nc|ENSG00000169744|O43679-2|LDB2;nc|ENSG00000169744|O43679-3|LDB2;ENSG00000169744|ENST00000304523|LDB2	ENST00000508918.5_1_4:16504706-16675844:-|nuORF	ENST00000508918.5_1_4:16504706-16675844:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	515.7003784179688	2	515.300581	1028.58661	-0.64669	-0.00033324	0.33631	0.0001733	-0.31038	-0.00015994	515.3006445830703	52.686	0.50971	52.686	52.387	52.897	0					16	9	2	0	0	0	0.46045	1	18753	18753		36.127	0	1	3553400			58986	7434	43051	43384	57510	57510					0.07346012131779389
VLDQTGHPAP	10	Unmodified	_VLDQTGHPAP_					0	0	0			REV__ENST00000279281.7_2_11:64879073-64879157:+|nuORF	REV__ENST00000279281.7_2_11:64879073-64879157:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	517.7053833007812	2	517.766906	1033.51926	-0.56057	-0.00029025	0.37432	0.00019381	-0.18625	-9.6436E-05	517.7669478888956	79.932	0.30698	79.932	79.676	79.983	0					7	5	2	0	0	0	0.7098	1	29098	29098		7.9102	0	1	827720	+		58987	23311	43052	43385	57511	57511					0.0038398192079966975
VLDQTGHPAP	10	Unmodified	_VLDQTGHPAP_					0	0	0			REV__ENST00000279281.7_2_11:64879073-64879157:+|nuORF	REV__ENST00000279281.7_2_11:64879073-64879157:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	517.766906	1033.51926	-0.56057	-0.00029025	0.37432	0.00019381	-0.18625	-9.6436E-05	517.7669478888956	79.932	0.30698	79.932	79.676	79.983	0	0	0	NaN	7.9102	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	827720	+		58988	23311	43052	43385							0.0038398192079966975
VLDQVLFLR	9	Unmodified	_VLDQVLFLR_					0	0	0			REV__ENST00000481205.5_1_14:60072082-60072247:-|nuORF	REV__ENST00000481205.5_1_14:60072082-60072247:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	368.6257019042969	3	368.225486	1101.65463	0.497	0.00018301	0.53657	0.00019758	1.0336	0.00038059	368.2255569959794	72.015	0.50551	72.015	71.715	72.22	0					23	9	3	0	0	0	0.54799	1	26175	26175		17.443	1.704	1	3558800	+		58989	19186	43053	43386	57512	57512					0.10786881782405544
VLDQVLFLR	9	Unmodified	_VLDQVLFLR_					0	0	0			REV__ENST00000481205.5_1_14:60072082-60072247:-|nuORF	REV__ENST00000481205.5_1_14:60072082-60072247:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	368.225486	1101.65463	0.497	0.00018301	0.53657	0.00019758	1.0336	0.00038059	368.2255569959794	72.015	0.50551	72.015	71.715	72.22	0	0.16257	0.00018351	NaN	17.443	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3558800	+		58990	19186	43053	43386							0.10786881782405544
VLDRGAGL	8	Unmodified	_VLDRGAGL_					0	0	0		ENSG00000225556|ENST00000694868|C2CD4D	ENSG00000225556|ENST00000694868|C2CD4D	ENSG00000225556|ENST00000694868|C2CD4D	MULTI-MSMS	A375_MHC_IP_R1	1	401.1350402832031	2	400.734877	799.455202	-0.23817	-9.5444E-05	0.42074	0.0001686	0.18257	7.3161E-05	400.7350045512446	39.314	0.55843	39.314	39.085	39.643	0					16	10	2	0	0	0	0.71318	1	13434	13434		30.637	0	1	5551400			58991	9696	43054	43387	57513	57513					0.04745246554534788
VLDRLTFDY	9	Unmodified	_VLDRLTFDY_					0	0	0		ENSG00000015676|ENST00000355451|NUDCD3;ENST00000338427.10_1_7:44425612-44442312:-|nuORF	ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	MULTI-SECPEP	A375_MHC_IP_R1	1	570.62109375	2	571.298039	1140.58152	-0.40001	-0.00022853	0.11717	6.6939E-05	-0.28285	-0.00016159	571.297819941977	87.005	0.45605	87.005	86.781	87.237	0					17	8	3	0	0	0	0.3697	1	31929	31929		51.415	35.266	1	3079300			58992	1036	43055	43388	57514	57514					0.016857082691331016
VLDSEGYLLFY	11	Unmodified	_VLDSEGYLLFY_					0	0	0		ENSG00000124422|ENST00000261497|USP22;nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000273820|ENST00000621775|USP27X	ENSG00000124422|ENST00000261497|USP22	ENSG00000124422|ENST00000261497|USP22	MULTI-MSMS	A375_MHC_IP_R1	1	660.2318725585938	2	659.831911	1317.64927	-0.73372	-0.00048413	0.099774	6.5834E-05	-0.63394	-0.0004183	659.8318773558168	131.4	0.25143	131.4	131.28	131.53	0					10	4	3	0	0	0	0.089213	1	50667	50667		71.922	35.795	1	12873000			58993	3899	43056	43389	57515	57515					0.003151134092831853
VLDSEGYLLFY	11	Unmodified	_VLDSEGYLLFY_					0	0	0		ENSG00000124422|ENST00000261497|USP22;nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000273820|ENST00000621775|USP27X	ENSG00000124422|ENST00000261497|USP22	ENSG00000124422|ENST00000261497|USP22	MULTI-SECPEP	A375_MHC_IP_R2	2	660.2316284179688	2	659.831911	1317.64927	-0.89078	-0.00058777	0.14888	9.8239E-05	-0.7419	-0.00048953	659.8318545650027	131.22	0.2536	131.41	131.24	131.49	0.18953					10	4	3	0	0	0	0.042095	1	51625	51625		71.922	37.521	1	13205000			58994	3899	43056	43389	57516	57516					0.003151134092831853
VLDSFLQGY	9	Unmodified	_VLDSFLQGY_					0	0	0		nc|ENSG00000186185|Q86Y91-6|KIF18B;ENSG00000186185|ENST00000593135|KIF18B	nc|ENSG00000186185|Q86Y91-6|KIF18B	nc|ENSG00000186185|Q86Y91-6|KIF18B	MULTI-SECPEP	A375_MHC_IP_R1	1	520.6898193359375	2	521.266207	1040.51786	-0.064042	-3.3383E-05	0.014313	7.4611E-06	-0.049728	-2.5922E-05	521.2660978561369	114.98	0.55331	114.98	114.67	115.22	0					25	10	3	0	0	0	0.60917	1	42209	42209		19.257	0	1	4748000			58995	8726	43057	43390	57517	57517					-0.0007765216794268781
VLDSFLQGY	9	Unmodified	_VLDSFLQGY_					0	0	0		nc|ENSG00000186185|Q86Y91-6|KIF18B;ENSG00000186185|ENST00000593135|KIF18B	nc|ENSG00000186185|Q86Y91-6|KIF18B	nc|ENSG00000186185|Q86Y91-6|KIF18B	MULTI-MSMS	A375_MHC_IP_R2	2	1041.70947265625	1	1041.52514	1040.51786	0.25377	0.00026431	0.16214	0.00016887	0.41591	0.00043318	1041.5248858769608	114.19	0.40162	114.9	114.68	115.08	0.70985					11	7	2	0	0	0	0.10411	1	42976	42976		49.933	9.9757	1	3049300			58996	8726	43057	43390	57518	57518					-0.0007765216794268781
VLDSFLQGY	9	Unmodified	_VLDSFLQGY_					0	0	0		nc|ENSG00000186185|Q86Y91-6|KIF18B;ENSG00000186185|ENST00000593135|KIF18B	nc|ENSG00000186185|Q86Y91-6|KIF18B	nc|ENSG00000186185|Q86Y91-6|KIF18B	MULTI-MSMS	A375_MHC_IP_R2	2	521.665771484375	2	521.266207	1040.51786	-0.40923	-0.00021332	-0.12706	-6.6233E-05	-0.53629	-0.00027955	521.2660075719447	114.16	0.70619	114.87	114.53	115.24	0.70984					29	13	3	0	0	0	0.018546	1	43062	43062		85.272	17.191	1	5162900			58997	8726	43057	43390	57519	57519					-0.0007765216794268781
VLDSHIHAY	9	Unmodified	_VLDSHIHAY_					0	0	0		nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000106278|P23471-3|PTPRZ1	nc|ENSG00000106278|P23471-2|PTPRZ1	nc|ENSG00000106278|P23471-2|PTPRZ1	MULTI-SECPEP	A375_MHC_IP_R1	1	352.58203125	3	352.182058	1053.52434	-0.29751	-0.00010478	0.1321	4.6524E-05	-0.16541	-5.8255E-05	352.1821062791669	32.4	0.55511	32.4	32.179	32.734	0					18	10	2	0	0	0	0.38578	1	10471	10471		34.402	18.253	1	7063500			58998	2679	43058	43391	57520	57520					-0.00027714216571439465
VLDSHIHAY	9	Unmodified	_VLDSHIHAY_					0	0	0		nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000106278|P23471-3|PTPRZ1	nc|ENSG00000106278|P23471-2|PTPRZ1	nc|ENSG00000106278|P23471-2|PTPRZ1	MULTI-SECPEP	A375_MHC_IP_R2	2	352.58203125	3	352.182058	1053.52434	-0.25065	-8.8275E-05	0.18554	6.5343E-05	-0.065114	-2.2932E-05	352.1820680608642	31.672	0.50966	32.409	32.095	32.605	0.73691					14	9	2	0	0	0	0.49205	1	11225	11225		34.402	19.153	1	7541600			58999	2679	43058	43391	57521	57521					-0.00027714216571439465
VLDSVDVRL	9	Unmodified	_VLDSVDVRL_					0	0	0		ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	MULTI-SECPEP	A375_MHC_IP_R1	1	508.6928405761719	2	508.292756	1014.57096	-0.40858	-0.00020768	-0.25109	-0.00012763	-0.65967	-0.00033531	508.2925853825465	74.458	0.66006	74.458	74.197	74.857	0					26	12	3	0	0	0	0.090157	1	27114	27114		67.838	10.116	1	4649300			59000	7382	43059	43392	57522	57522					0.06425725614712974
VLDSVDVRL	9	Unmodified	_VLDSVDVRL_					0	0	0		ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	MULTI-SECPEP	A375_MHC_IP_R2	2	508.16754150390625	2	508.292756	1014.57096	-0.70949	-0.00036063	-0.24034	-0.00012216	-0.94983	-0.00048279	508.2927179516347	73.706	0.71313	74.441	74.141	74.855	0.73541					30	13	3	0	0	0	0.13244	1	27949	27949		51.415	9.4597	1	5727300			59001	7382	43059	43392	57523	57523					0.06425725614712974
VLDTQKQTA	9	Unmodified	_VLDTQKQTA_					0	0	0			REV__ENSG00000120051|ENST00000369704|CFAP58	REV__ENSG00000120051|ENST00000369704|CFAP58	MULTI-SECPEP	A375_MHC_IP_R2	2	502.6743469238281	2	502.274564	1002.53457	-1.0762	-0.00054055	0.19575	9.8322E-05	-0.88046	-0.00044223	502.2748803757116	33.924	0.30383	34.677	34.55	34.853	0.75225					8	5	2	0	0	0	0.63622	1	12231	12231		10.151	0	1	2228800	+		59002	18111	43060	43393	57524	57524					0.03340848718005418
VLDVLTQYR	9	Unmodified	_VLDVLTQYR_					0	0	0		nc|ENSG00000163803|Q6P1J6-3|PLB1;ENSG00000163803|ENST00000327757|PLB1;nc|ENSG00000163803|Q6P1J6-2|PLB1;nc|ENSG00000163803|Q6P1J6-4|PLB1	nc|ENSG00000163803|Q6P1J6-3|PLB1	nc|ENSG00000163803|Q6P1J6-3|PLB1	MULTI-MSMS	A375_MHC_IP_R1	1	369.9451904296875	3	369.544996	1105.61316	0.20714	7.6548E-05	0.43191	0.00015961	0.63906	0.00023616	369.5450644175274	47.15	0.36274	47.15	46.952	47.315	0					19	6	4	0	0	0	0.65721	1	16625	16625		7.1017	0	1	1520800			59003	6723	43061	43394	57525	57525					0.06457701023077789
VLDWFLWFTYQ	11	Unmodified	_VLDWFLWFTYQ_					0	0	0			REV__ENST00000557320.5_1_14:96999700-97000015:+|nuORF	REV__ENST00000557320.5_1_14:96999700-97000015:+|nuORF	MSMS	A375_MHC_IP_R1	1	759.3353271484375	2	759.37682	1516.73909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.34	1	110.34	109.84	110.84	0								0	0	0	0.16297	1	40460	40460		3.2813	0.28607	1		+		59004	26121	43062	43395	57526	57526					0.0013878780850973271
VLDYDTSHIY	10	Unmodified	_VLDYDTSHIY_					0	0	0		ENSG00000137845|ENST00000260408|ADAM10;ENST00000558733.5_1_15:58947546-59041769:-|nuORF	ENSG00000137845|ENST00000260408|ADAM10	ENSG00000137845|ENST00000260408|ADAM10	MULTI-MSMS	A375_MHC_IP_R1	1	613.6906127929688	2	613.290411	1224.56627	-0.452	-0.0002772	0.21903	0.00013433	-0.23297	-0.00014288	613.2905420303779	65.437	0.46005	65.437	65.257	65.717	0					13	8	2	0	0	0	0.0064649	1	23695	23695		103.75	46.277	1	4289300			59005	4929	43063	43396	57527	57527					-0.03703203318696069
VLDYDTSHIY	10	Unmodified	_VLDYDTSHIY_					0	0	0		ENSG00000137845|ENST00000260408|ADAM10;ENST00000558733.5_1_15:58947546-59041769:-|nuORF	ENSG00000137845|ENST00000260408|ADAM10	ENSG00000137845|ENST00000260408|ADAM10	MULTI-SECPEP	A375_MHC_IP_R2	2	613.6900634765625	2	613.290411	1224.56627	-0.56888	-0.00034889	-0.014581	-8.9423E-06	-0.58346	-0.00035783	613.290248724896	64.835	0.71043	65.573	65.257	65.968	0.73812					25	13	3	0	0	0	0.026175	1	24574	24574		103.75	55.402	1	3935700			59006	4929	43063	43396	57528	57528					-0.03703203318696069
VLDYFLRRL	9	Unmodified	_VLDYFLRRL_					0	0	0		ENSG00000164880|ENST00000404767|INTS1;ENST00000468115.1_1_7:1523234-1533501:-|nuORF	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	A375_MHC_IP_R1	1	1194.665771484375	1	1194.69935	1193.69208	-0.099369	-0.00011872	3.1107	0.0037164	3.0114	0.0035977	1194.7033119653156	129.12	0.30644	129.12	128.94	129.25	0					9	5	2	0	0	0	0.72507	1	49590	49590		4.756	0	1	9395000			59007	6889	43064	43397	57529	57529					0.10297973048045606
VLEAEVLALK	10	Unmodified	_VLEAEVLALK_					0	0	0		nc|ENSG00000186575|P35240-4|NF2;nc|ENSG00000186575|P35240-6|NF2;nc|ENSG00000186575|P35240-5|NF2;nc|ENSG00000186575|P35240-8|NF2;nc|ENSG00000186575|P35240-3|NF2;ENSG00000186575|ENST00000338641|NF2;nc|ENSG00000186575|P35240-2|NF2	nc|ENSG00000186575|P35240-4|NF2	nc|ENSG00000186575|P35240-4|NF2	MSMS	A375_MHC_IP_R1	1	542.7339477539062	2	542.834257	1083.65396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.83	1	143.83	143.33	144.33	0								0	0	0	0.1552	1	55171	55171		3.9444	0.3479	1				59008	8761	43065	43398	57530	57530					0.11548042342701592
VLEALQKTWK	10	Unmodified	_VLEALQKTWK_					0	0	0		ENST00000609376.5_2_2:145276067-145276327:+|nuORF;ENST00000610265.1_2_2:145276031-145277092:+|nuORF;ENST00000427278.7_1_2:145276031-145277833:+|nuORF	ENST00000609376.5_2_2:145276067-145276327:+|nuORF	ENST00000609376.5_2_2:145276067-145276327:+|nuORF	MSMS	A375_MHC_IP_R1	1	608.3425903320312	2	608.358431	1214.70231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.17	1	112.17	111.67	112.67	0								0	0	0	0.15451	1	41114	41114		6.2058	0	1				59009	11819	43066	43399	57531	57531					0.10354535982605739
VLEDKVLSV	9	Unmodified	_VLEDKVLSV_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-SECPEP	A375_MHC_IP_R1	1	501.6968078613281	2	501.297507	1000.58046	-0.36235	-0.00018164	-1.1048	-0.00055383	-1.4671	-0.00073547	501.29704031897717	63.772	0.91561	63.772	63.427	64.343	0					36	17	3	0	0	0	0.058501	1	23030	23030		78.06	28.127	1	6291300			59010	8538	43067	43400	57532	57532					0.08019493900235375
VLEDKVLSV	9	Unmodified	_VLEDKVLSV_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-SECPEP	A375_MHC_IP_R2	2	501.69720458984375	2	501.297507	1000.58046	-0.56298	-0.00028222	-0.4239	-0.0002125	-0.98688	-0.00049472	501.2973622082799	62.968	0.7581	63.71	63.383	64.142	0.74263					22	14	2	0	0	0	0.058501	1	23835	23835		78.06	19.382	1	8652300			59011	8538	43067	43400	57533	57533					0.08019493900235375
VLEDPLELH	9	Unmodified	_VLEDPLELH_					0	0	0		PCDHAC1|p.D98N|1|0.62|ENSG00000248383|chr5:140927184-140927184|G/A|missense_variant;nc|ENSG00000248383|Q9H158-2|PCDHAC1;ENSG00000248383|ENST00000253807|PCDHAC1	PCDHAC1|p.D98N|1|0.62|ENSG00000248383|chr5:140927184-140927184|G/A|missense_variant	PCDHAC1|p.D98N|1|0.62|ENSG00000248383|chr5:140927184-140927184|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1849975585938	2	532.784764	1063.55498	-0.59713	-0.00031814	0.46268	0.00024651	-0.13445	-7.1636E-05	532.7849344000817	57.237	0.40799	57.237	57.059	57.467	0					11	7	2	0	0	0	0.3243	1	20559	20559		36.044	20.197	1	2765200			59012	9833	43068	43401	57534	57534					0.025740193777892273
VLEDPVHAV	9	Unmodified	_VLEDPVHAV_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	A375_MHC_IP_R2	2	490.1661376953125	2	489.766374	977.518196	-0.78005	-0.00038204	-3.9443	-0.0019318	-4.7243	-0.0023138	489.76623563901643	51.543	0.81369	52.296	51.915	52.729	0.75225					41	15	3	0	0	0	0.05754	2	19419	19360;19419		61.357	17.499	1	22424000			59013	1290	43069	43402	57535;57536	57536					0.028537675519032746
VLEEFVPEI	9	Unmodified	_VLEEFVPEI_					0	0	0		nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	MULTI-MSMS	A375_MHC_IP_R2	2	538.1900024414062	2	537.789515	1073.56448	-0.81793	-0.00043987	0.20991	0.00011289	-0.60801	-0.00032698	537.7897110529706	126.26	0.35255	126.56	126.43	126.78	0.2951					10	6	2	0	0	0	0.11296	1	49446	49446		48.346	25.197	1	8653200			59014	2935	43070	43403	57537	57537					0.030637876633363703
VLEEPFVMVA	10	Unmodified	_VLEEPFVMVA_					0	0	0		nc|ENSG00000182771|Q9ULK0-2|GRID1;ENSG00000182771|ENST00000327946|GRID1	nc|ENSG00000182771|Q9ULK0-2|GRID1	nc|ENSG00000182771|Q9ULK0-2|GRID1	MULTI-MSMS	A375_MHC_IP_R2	2	567.7291870117188	2	567.299193	1132.58383	-0.33861	-0.00019209	0.39509	0.00022413	0.056478	3.204E-05	567.2997099286129	126.04	1.5676	126.34	125.82	127.39	0.2951					37	30	2	0	0	0	0.71866	1	49231	49231		3.9444	3.9444	1	10515000			59015	8435	43071	43404	57538	57538					0.022844206826221125
VLEEWNGSTN	10	Unmodified	_VLEEWNGSTN_					0	0	0			REV__nc|ENSG00000141367|Q00610-2|CLTC	REV__nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	A375_MHC_IP_R1	1	575.1640014648438	2	574.76456	1147.51457	-0.18813	-0.00010813	-0.77691	-0.00044654	-0.96503	-0.00055467	574.7641145770484	23.14	0.25248	23.14	22.974	23.227	0					6	4	2	0	0	0	0.63336	1	6338	6338		18.373	5.3306	1	4260900	+		59016	19256	43072	43405	57539	57539					-0.053289470125946536
VLEEWNGSTN	10	Unmodified	_VLEEWNGSTN_					0	0	0			REV__nc|ENSG00000141367|Q00610-2|CLTC	REV__nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	A375_MHC_IP_R2	2	575.1636352539062	2	574.76456	1147.51457	-0.54067	-0.00031076	0.28747	0.00016523	-0.2532	-0.00014553	575.2661818006044	20.803	0.35478	21.413	21.262	21.616	0.61029					11	6	2	0	0	0	0.83327	1	6521	6521		29.841	29.841	1	2006200	+		59017	19256	43072	43405	57540	57540					-0.053289470125946536
VLEEWNGSTN	10	Unmodified	_VLEEWNGSTN_					0	0	0			REV__nc|ENSG00000141367|Q00610-2|CLTC	REV__nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	574.76456	1147.51457	-0.18813	-0.00010813	-0.77691	-0.00044654	-0.96503	-0.00055467	574.7641145770484	23.14	0.25248	23.14	22.974	23.227	0	0	0	NaN	18.373	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4260900	+		59018	19256	43072	43405							-0.053289470125946536
VLEGILYKL	9	Unmodified	_VLEGILYKL_					0	0	0			REV__ENSG00000226650|ENST00000435029|KIF4B;REV__ENSG00000090889|ENST00000374403|KIF4A	REV__ENSG00000226650|ENST00000435029|KIF4B	MULTI-SECPEP	A375_MHC_IP_R1	1	524.2158813476562	2	524.326068	1046.63758	-0.39683	-0.00020807	0.01423	7.4611E-06	-0.3826	-0.00020061	524.3260999479545	105.2	0.55882	105.2	104.89	105.45	0					23	10	3	0	0	0	0.71541	1	38522	38522		11.64	8.0438	1	2692300	+		59019	22723;16934	43073	43406	57541	57541					0.116129611766155
VLEGRLLLESL	11	Unmodified	_VLEGRLLLESL_					0	0	0		ENSG00000063438|ENST00000684583|AHRR;nc|ENSG00000063438|A9YTQ3|AHRR;nc|ENSG00000063438|A9YTQ3-3|AHRR;nc|ENSG00000063438|A9YTQ3-2|AHRR	ENSG00000063438|ENST00000684583|AHRR	ENSG00000063438|ENST00000684583|AHRR	MULTI-MSMS	A375_MHC_IP_R1	1	621.7763671875	2	621.37682	1240.73909	-0.79539	-0.00049424	0.21326	0.00013251	-0.58214	-0.00036173	621.3768846658794	149.93	0.94484	149.93	149.06	150	0					78	41	2	0	0	0	0.73934	1	57142	57142		0	0	1	152270			59020	1341	43074	43407	57542	57542					0.12834787808560577
VLEGSWILY	9	Unmodified	_VLEGSWILY_					0	0	0		ENSG00000182187|ENST00000260988|CRYGB	ENSG00000182187|ENST00000260988|CRYGB	ENSG00000182187|ENST00000260988|CRYGB	MULTI-SECPEP	A375_MHC_IP_R1	1	540.6659545898438	2	540.292225	1078.5699	-0.84512	-0.00045661	3.8265	0.0020675	2.9814	0.0016108	540.2936109470058	66.503	0.40883	66.503	66.275	66.684	0					11	7	2	0	0	0	0.16229	1	24104	24104		32.305	5.4218	1	1524000			59021	8386	43075	43408	57543	57543					0.03375511245803864
VLEHVVRV	8	Unmodified	_VLEHVVRV_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;ENSG00000156009|ENST00000286482|MAGEA8	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-SECPEP	A375_MHC_IP_R1	1	476.1929016113281	2	475.792727	949.5709	-1.0029	-0.00047715	0.78823	0.00037503	-0.21462	-0.00010212	475.79313372386906	29.328	0.30382	29.328	29.149	29.453	0					8	5	2	0	0	0	0.76164	1	9173	9173		45.7	27.553	1	6369000			59022	520	43076	43409	57544	57544					0.09409770405375184
VLEHVVRV	8	Unmodified	_VLEHVVRV_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;ENSG00000156009|ENST00000286482|MAGEA8	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-SECPEP	A375_MHC_IP_R1	1	476.1925048828125	2	475.792727	949.5709	-0.40316	-0.00019182	0.04753	2.2614E-05	-0.35563	-0.0001692	475.792670273577	37.296	0.97006	37.296	37.045	38.016	0					29	18	3	0	0	0	0.64461	1	12553	12553		53.833	13.875	1	12103000			59023	520	43076	43409	57545	57545					0.09409770405375184
VLEHVVRV	8	Unmodified	_VLEHVVRV_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;ENSG00000156009|ENST00000286482|MAGEA8	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-SECPEP	A375_MHC_IP_R2	2	476.19219970703125	2	475.792727	949.5709	-0.70266	-0.00033432	-0.13568	-6.4558E-05	-0.83834	-0.00039888	475.7925967749022	36.307	0.50853	37.078	36.901	37.41	0.7709					19	9	3	0	0	0	0.80467	1	13209	13209		34.402	0.29928	1	9784500			59024	520	43076	43409	57546	57546					0.09409770405375184
VLEHVVRV	8	Unmodified	_VLEHVVRV_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;ENSG00000156009|ENST00000286482|MAGEA8	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-SECPEP	A375_MHC_IP_R2	2	476.19232177734375	2	475.792727	949.5709	-0.94932	-0.00045168	0.23784	0.00011316	-0.71148	-0.00033852	475.7927255115147	28.407	0.3047	29.086	28.909	29.214	0.67857					12	5	3	0	0	0	0.6033	1	9810	9810		56.177	23.872	1	6480200			59025	520	43076	43409	57547	57547					0.09409770405375184
VLEISPQE	8	Unmodified	_VLEISPQE_					0	0	0		MS4A2|p.S35L|1|0.33|ENSG00000149534|chr11:60089739-60089739|C/T|missense_variant;ENST00000440896.2_1_11:59856214-59861079:+|nuORF;ENSG00000149534|ENST00000278888|MS4A2	MS4A2|p.S35L|1|0.33|ENSG00000149534|chr11:60089739-60089739|C/T|missense_variant	MS4A2|p.S35L|1|0.33|ENSG00000149534|chr11:60089739-60089739|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	914.391357421875	1	914.482939	913.475663	-0.31622	-0.00028917	0.034674	3.1709E-05	-0.28154	-0.00025747	914.4828989941815	84.991	1.2734	84.991	84.545	85.819	0					52	24	3	0	0	0	0.62444	1	31405	31405		43.858	0	1	11399000			59026	5811	43077	43410	57548	57548					0.015463724236724374
VLEKEHDY	8	Unmodified	_VLEKEHDY_					0	0	0		ENST00000565532.5_1_16:66762088-66770076:-|nuORF;nc|ENSG00000135720|O43237-2|DYNC1LI2;ENSG00000135720|ENST00000258198|DYNC1LI2;ENST00000561727.1_1_16:66768052-66770124:-|nuORF;ENST00000481915.5_1_3:32574447-32611850:-|nuORF;ENSG00000144635|ENST00000273130|DYNC1LI1	ENST00000565532.5_1_16:66762088-66770076:-|nuORF	ENST00000565532.5_1_16:66762088-66770076:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1529541015625	2	516.753464	1031.49238	-1.0034	-0.00051852	-1.3045	-0.00067413	-2.308	-0.0011926	516.7526739770332	41.211	0.60864	41.985	41.59	42.198	0.77451					15	11	2	0	0	0	0.92636	1	15306	15306		11.64	0	1	3443000			59027	4707	43078	43411	57549	57549					-0.022111266903721116
VLEKSLLNV	9	Unmodified	_VLEKSLLNV_					0	0	0		ENSG00000164244|ENST00000296666|PRRC1;nc|ENSG00000164244|Q96M27-3|PRRC1;nc|ENSG00000164244|Q96M27-2|PRRC1;ENST00000442138.6_1_5:126887311-126887605:+|nuORF	ENSG00000164244|ENST00000296666|PRRC1	ENSG00000164244|ENST00000296666|PRRC1	MULTI-SECPEP	A375_MHC_IP_R2	2	508.2133483886719	2	507.813325	1013.6121	-0.68794	-0.00034934	-0.58243	-0.00029576	-1.2704	-0.00064511	507.8134126922243	78.517	0.45613	79.261	79.033	79.489	0.74474					13	8	2	0	0	0	0.69381	1	29843	29843		15.248	0.8431	1	2207400			59028	6808	43079	43412	57550	57550					0.10583486654184071
VLELLMYF	8	Unmodified	_VLELLMYF_					0	0	0		ENSG00000164190|ENST00000282516|NIPBL;nc|ENSG00000164190|Q6KC79-2|NIPBL	ENSG00000164190|ENST00000282516|NIPBL	ENSG00000164190|ENST00000282516|NIPBL	MULTI-MSMS	A375_MHC_IP_R1	1	514.6797485351562	2	514.280272	1026.54599	-0.57586	-0.00029615	-0.45823	-0.00023566	-1.0341	-0.00053181	514.2799487783719	24.775	0.20464	24.775	24.647	24.852	0					6	3	2	0	0	0	0.7758	1	7144	7144		10.183	0	1	5228300			59029	6800	43080	43413	57551	57551					0.03377954487768875
VLEMLQRF	8	Unmodified	_VLEMLQRF_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;ENST00000569732.1_1_16:58585686-58592512:-|nuORF	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MSMS	A375_MHC_IP_R2	2	518.3262329101562	2	518.28642	1034.55829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.587	1	36.35	35.85	36.85	0.76338								0	0	0	0.16876	1	12915	12915		7.9102	0	1				59030	3941	43081	43414	57552	57552					0.0423899095080742
VLEQALAP	8	Unmodified	_VLEQALAP_					0	0	0		ENST00000361028.5_1_6:28349926-28350043:-|nuORF;ENST00000396827.3_1_6:28348556-28350043:-|nuORF	ENST00000361028.5_1_6:28349926-28350043:-|nuORF	ENST00000361028.5_1_6:28349926-28350043:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	421.1438903808594	2	420.744911	839.475269	0.22381	9.4169E-05	-1.1801	-0.00049652	-0.95628	-0.00040235	420.7435919673948	106.41	1.9402	106.41	105.55	107.49	0					76	37	4	0	0	0	0.77839	1	39075	39075		0.79363	0	1	5921300			59031	11036	43082	43415	57553	57553					0.049109974944599344
VLEQAQIW	8	Unmodified	_VLEQAQIW_					0	0	0			REV__nc|ENSG00000163803|Q6P1J6-3|PLB1	REV__nc|ENSG00000163803|Q6P1J6-3|PLB1	MULTI-SECPEP	A375_MHC_IP_R1	1	493.1481018066406	2	493.768917	985.523281	-0.49595	-0.00024488	-2.012	-0.00099348	-2.508	-0.0012384	493.767817183691	86.814	0.30397	86.814	86.679	86.983	0					7	5	2	0	0	0	0.92215	1	31886	31886		22.453	0.70599	1	1160300	+		59032	27321	43083	43416	57554	57554					0.029940714145027414
VLEQISAEYL	10	Unmodified	_VLEQISAEYL_					0	0	0		ENST00000409003.4_2_8:119634062-119634176:-|nuORF	ENST00000409003.4_2_8:119634062-119634176:-|nuORF	ENST00000409003.4_2_8:119634062-119634176:-|nuORF	MSMS	A375_MHC_IP_R2	2	582.767333984375	2	582.810979	1163.6074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.887	1	95.632	95.132	96.132	0.74474								0	0	0	0.15158	1	36052	36052		14.838	0	1				59033	11616	43084	43417	57555	57555					0.032145577207757015
VLEQLFVLY	9	Unmodified	_VLEQLFVLY_					0	0	0		ENST00000254108.11_1_16:31202764-31202875:+|nuORF	ENST00000254108.11_1_16:31202764-31202875:+|nuORF	ENST00000254108.11_1_16:31202764-31202875:+|nuORF	MSMS	A375_MHC_IP_R2	2	562.3036499023438	2	562.323525	1122.6325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.18	1	100.95	100.45	101.45	0.76278								0	0	0	0.15486	1	37992	37992		12.532	0	1				59034	10221	43085	43418	57556	57556					0.07608657314017364
VLEQRATY	8	Unmodified	_VLEQRATY_					0	0	0			REV__nc|ENSG00000214367|Q68CZ6-2|HAUS3	REV__nc|ENSG00000214367|Q68CZ6-2|HAUS3	MULTI-MSMS	A375_MHC_IP_R1	1	490.6647033691406	2	490.263999	978.513445	-0.31698	-0.00015541	0.63476	0.0003112	0.31777	0.00015579	490.26455314015965	52.358	0.81336	52.358	51.982	52.796	0					40	15	4	0	0	0	0.68964	1	18600	18600		37.974	1.847	1	13416000	+		59035	22652	43086	43419	57557	57557					0.023328834091216777
VLERGQLN	8	Unmodified	_VLERGQLN_					0	0	0		ENSG00000140323|ENST00000267889|DISP2	ENSG00000140323|ENST00000267889|DISP2	ENSG00000140323|ENST00000267889|DISP2	MULTI-MSMS	A375_MHC_IP_R2	2	464.68450927734375	2	464.764166	927.513779	-0.6781	-0.00031516	0.23323	0.0001084	-0.44487	-0.00020676	464.7641649075725	32.677	0.55922	33.414	33.265	33.825	0.73692					14	10	2	0	0	0	0.73946	1	11659	11659		23.148	0	1	2068100			59036	5143	43087	43420	57558	57558					0.04712303128997064
VLERLQPL	8	Unmodified	_VLERLQPL_					0	0	0			REV__ENSG00000083782|ENST00000261172|EPYC	REV__ENSG00000083782|ENST00000261172|EPYC	MULTI-MSMS	A375_MHC_IP_R1	1	484.7003479003906	2	484.300384	966.586216	-0.24622	-0.00011924	2.2027	0.0010668	1.9565	0.00094751	484.300444870333	54.712	0.6097	54.712	54.415	55.025	0					22	11	3	0	0	0	0.70206	1	19565	19565		34.102	1.797	1	4405200	+		59037	16810	43088	43421	57559	57559					0.10158637202562204
VLERLQPL	8	Unmodified	_VLERLQPL_					0	0	0			REV__ENSG00000083782|ENST00000261172|EPYC	REV__ENSG00000083782|ENST00000261172|EPYC	MULTI-SECPEP	A375_MHC_IP_R2	2	484.7001647949219	2	484.300384	966.586216	-1.0327	-0.00050012	0.1214	5.8796E-05	-0.91127	-0.00044133	484.30038281206663	53.78	0.4111	54.531	54.301	54.712	0.75105					12	7	2	0	0	0	0.73563	1	20311	20311		44.407	0	1	4727100	+		59038	16810	43088	43421	57560	57560					0.10158637202562204
VLERLQPL	8	Unmodified	_VLERLQPL_					0	0	0			REV__ENSG00000083782|ENST00000261172|EPYC	REV__ENSG00000083782|ENST00000261172|EPYC	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	484.300384	966.586216	-0.24622	-0.00011924	2.2027	0.0010668	1.9565	0.00094751	484.300444870333	54.712	0.6097	54.712	54.415	55.025	0	0.090309	0.0019321	NaN	34.102	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4405200	+		59039	16810	43088	43421							0.10158637202562204
VLERVNAV	8	Unmodified	_VLERVNAV_					0	0	0		ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENSG00000100911|ENST00000216802|PSME2;ENST00000559359.1_1_14:24613399-24613677:-|nuORF;ENST00000453033.1_1_13:49345602-49345743:+|nuORF;ENST00000471700.6_1_14:24612807-24615772:-|nuORF	ENST00000442824.1_1_5:97549420-97549822:+|nuORF	ENST00000442824.1_1_5:97549420-97549822:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	450.1424255371094	2	450.269084	898.523616	-0.73663	-0.00033168	0.02751	1.2387E-05	-0.70912	-0.00031929	450.269145990948	34.012	0.15199	34.764	34.651	34.803	0.75225					4	2	2	0	0	0	0.80467	1	12245	12245		34.402	5.9149	1	3076600			59040	2230	43089	43422	57561	57561					0.07029491134369437
VLESPRGVW	9	Unmodified	_VLESPRGVW_					0	0	0		ENSG00000165072|ENST00000377182|MAMDC2	ENSG00000165072|ENST00000377182|MAMDC2	ENSG00000165072|ENST00000377182|MAMDC2	MULTI-SECPEP	A375_MHC_IP_R1	1	521.183349609375	2	521.787641	1041.56073	-0.69706	-0.00036372	-0.18062	-9.4245E-05	-0.87768	-0.00045796	521.7876333266365	30.953	0.30311	30.953	30.806	31.109	0					9	5	2	0	0	0	0.77834	1	9826	9826		4.756	0	1	1460700			59041	6908	43090	43423	57562	57562					0.04161162680134112
VLETGGLSGY	10	Unmodified	_VLETGGLSGY_					0	0	0		ENST00000258412.7_1_2:219140006-219140096:-|nuORF	ENST00000258412.7_1_2:219140006-219140096:-|nuORF	ENST00000258412.7_1_2:219140006-219140096:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	498.7156677246094	2	498.25584	994.497126	-0.38811	-0.00019338	-0.19854	-9.8921E-05	-0.58665	-0.0002923	498.25587676254094	93.896	0.60561	93.896	93.635	94.241	0					25	11	3	0	0	0	0.65248	1	34621	34621		16.942	0	1	1391900			59042	10256	43091	43424	57563	57563					-0.0003424254761057455
VLEVHVPQV	9	Unmodified	_VLEVHVPQV_					0	0	0		ENST00000586752.5_1_17:74723041-74729072:+|nuORF;ENST00000588822.1_1_17:74723041-74723314:+|nuORF	ENST00000586752.5_1_17:74723041-74729072:+|nuORF	ENST00000586752.5_1_17:74723041-74729072:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	510.2236633300781	2	510.297842	1018.58113	-0.77354	-0.00039473	-1.7322	-0.00088395	-2.5058	-0.0012787	510.2979613310521	74.188	0.91435	74.925	74.553	75.467	0.73751					43	17	3	0	0	0	0.16764	1	28145	28145		43.772	11.467	1	2839600			59043	13733	43092	43425	57564	57564					0.07258333339950696
VLEWCTGTVP	10	Unmodified	_VLEWCTGTVP_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	A375_MHC_IP_R2	2	369.6049499511719	3	368.85132	1103.53213	0.45058	0.0001662	-1.5276	-0.00056344	-1.077	-0.00039724	368.85023166013093	43.812	0.25203	44.581	44.43	44.682	0.7691					6	4	2	0	0	0	0.92389	1	16348	16348		6.6304	6.1759	1	640650			59044	5800	43093	43426	57565	57565					-0.015493230112952006
VLFAIRPH	8	Unmodified	_VLFAIRPH_					0	0	0		nc|ENSG00000101204|P43681-2|CHRNA4	nc|ENSG00000101204|P43681-2|CHRNA4	nc|ENSG00000101204|P43681-2|CHRNA4	MULTI-MSMS	A375_MHC_IP_R1	1	952.9703369140625	1	952.572697	951.565421	-0.31073	-0.00029599	-1.5749	-0.0015002	-1.8856	-0.0017962	952.5712513882473	144.18	0.21516	144.18	144.03	144.25	0					6	4	2	0	0	0	0.77839	1	55319	55319		0.79363	0	1	575140			59045	14513	43094	43427	57566	57566					0.08770091613541808
VLFAMCITFFH	11	Unmodified	_VLFAMCITFFH_					0	0	0			REV__nc|ENSG00000149305|O95264-2|HTR3B	REV__nc|ENSG00000149305|O95264-2|HTR3B	MSMS	A375_MHC_IP_R2	2	664.7744750976562	2	664.830137	1327.64572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.01	1	89.742	89.242	90.242	0.7318								0	0	0	0.1624	1	33877	33877		6.2058	0.42235	1		+		59046	19674	43095	43428	57567	57567					-0.004995511699689814
VLFATALGTV	10	Unmodified	_VLFATALGTV_					0	0	0		ENST00000474534.1_1_9:131798902-131809484:+|nuORF;nc|ENSG00000148343|Q7L4E1-2|MIGA2;nc|ENSG00000148343|Q7L4E1-3|MIGA2;ENSG00000148343|ENST00000684074|MIGA2	ENST00000474534.1_1_9:131798902-131809484:+|nuORF	ENST00000474534.1_1_9:131798902-131809484:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	496.6948547363281	2	496.294768	990.574983	-0.49374	-0.00024504	-0.49123	-0.0002438	-0.98498	-0.00048884	496.2947681646251	65.419	0.51108	65.419	65.105	65.616	0					21	9	3	0	0	0	0.48072	1	23658	23658		37.974	0	1	2809900			59047	5735	43096	43429	57568	57568					0.07931815108429419
VLFAVSIVTV	10	Unmodified	_VLFAVSIVTV_					0	0	0		ENSG00000166558|ENST00000299709|SLC38A8	ENSG00000166558|ENST00000299709|SLC38A8	ENSG00000166558|ENST00000299709|SLC38A8	MULTI-SECPEP	A375_MHC_IP_R1	1	523.7234497070312	2	524.326068	1046.63758	-0.45981	-0.00024109	1.7408	0.00091274	1.281	0.00067165	524.3266653834246	118.67	0.15231	118.67	118.58	118.73	0					4	2	2	0	0	0	0.89109	1	43736	43736		16.942	4.4107	1	2734700			59048	7090	43097	43430	57569	57569					0.116129611766155
VLFCHIHPV	9	Unmodified	_VLFCHIHPV_					0	0	0		ENSG00000183695|ENST00000329773|MRGPRX2	ENSG00000183695|ENST00000329773|MRGPRX2	ENSG00000183695|ENST00000329773|MRGPRX2	MULTI-SECPEP	A375_MHC_IP_R2	2	532.2239379882812	2	532.78913	1063.56371	-1.0256	-0.0005464	1.7642	0.00093997	0.73869	0.00039356	532.7903162750649	56.376	0.45893	57.126	56.796	57.255	0.75015					14	8	3	0	0	0	0.53495	1	21279	21279		20.871	2.7249	1	3765100			59049	8520	43098	43431	57570	57570					0.03446714533265549
VLFEHAVGYA	10	Unmodified	_VLFEHAVGYA_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000494697.5_1_20:2633306-2634895:+|nuORF;ENST00000470143.1_1_20:2633306-2634188:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	A375_MHC_IP_R1	1	553.68798828125	2	553.287474	1104.5604	-0.42818	-0.0002369	-0.16396	-9.0719E-05	-0.59214	-0.00032762	553.2881394897353	68.942	0.9138	68.942	68.361	69.275	0					37	17	3	0	0	0	0.28986	1	24983	24983		56.177	44.537	1	1826000			59050	2285	43099	43432	57571	57571					0.01229742960299518
VLFEHAVGYA	10	Unmodified	_VLFEHAVGYA_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000494697.5_1_20:2633306-2634895:+|nuORF;ENST00000470143.1_1_20:2633306-2634188:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	A375_MHC_IP_R2	2	553.68701171875	2	553.287474	1104.5604	-0.67296	-0.00037234	0.43583	0.00024114	-0.23713	-0.0001312	553.2877053470864	68.103	0.81266	68.838	68.409	69.221	0.73511					29	15	3	0	0	0	0.21482	1	25807	25807		65.235	42.577	1	2775700			59051	2285	43099	43432	57572	57572					0.01229742960299518
VLFENTDSV	9	Unmodified	_VLFENTDSV_					0	0	0		ENST00000495224.1_1_1:235295030-235299397:-|nuORF;ENSG00000188739|ENST00000408888|RBM34	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	512.6532592773438	2	512.253297	1022.49204	-0.35865	-0.00018372	-0.51223	-0.00026239	-0.87088	-0.00044611	512.2531838245634	79.167	1.0724	79.167	78.859	79.931	0					37	20	3	0	0	0	0.012968	1	28873	28873		92.491	20.569	1	3188500			59052	8929	43100	43433	57573	57573					-0.01830546410246825
VLFENTDSV	9	Unmodified	_VLFENTDSV_					0	0	0		ENST00000495224.1_1_1:235295030-235299397:-|nuORF;ENSG00000188739|ENST00000408888|RBM34	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	512.6525268554688	2	512.253297	1022.49204	-0.70762	-0.00036248	-0.5414	-0.00027734	-1.249	-0.00063981	512.2531119137801	78.482	1.1176	79.227	78.828	79.946	0.74474					39	21	3	0	0	0	0.015701	1	29763	29763		88.954	23.719	1	3100200			59053	8929	43100	43433	57574	57574					-0.01830546410246825
VLFENTDSVHL	11	Unmodified	_VLFENTDSVHL_					0	0	0		ENST00000495224.1_1_1:235295030-235299397:-|nuORF;ENSG00000188739|ENST00000408888|RBM34	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	637.7244873046875	2	637.324785	1272.63502	-0.90126	-0.00057439	0.30161	0.00019222	-0.59965	-0.00038217	637.3249826355448	85.793	0.71033	85.793	85.513	86.224	0					39	13	5	0	0	0	0.056403	1	31430	31430		103.82	78.424	1	18520000			59054	8929	43101	43434	57575	57575					0.009604609810139664
VLFENTDSVHL	11	Unmodified	_VLFENTDSVHL_					0	0	0		ENST00000495224.1_1_1:235295030-235299397:-|nuORF;ENSG00000188739|ENST00000408888|RBM34	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	637.7239990234375	2	637.324785	1272.63502	-0.64181	-0.00040904	0.15761	0.00010045	-0.4842	-0.00030859	637.3247892044574	84.995	0.76665	85.731	85.472	86.239	0.73602					40	14	4	0	0	0	0.028883	1	32288	32288		110.55	77.767	1	12119000			59055	8929	43101	43434	57576	57576					0.009604609810139664
VLFEVAWEV	9	Unmodified	_VLFEVAWEV_					0	0	0		nc|ENSG00000104812|P13807-2|GYS1;ENSG00000104812|ENST00000323798|GYS1	nc|ENSG00000104812|P13807-2|GYS1	nc|ENSG00000104812|P13807-2|GYS1	MULTI-MSMS	A375_MHC_IP_R1	1	1091.9757080078125	1	1091.57717	1090.5699	-0.14047	-0.00015333	-0.12661	-0.00013821	-0.26708	-0.00029154	1091.576387572776	131.96	0.25169	131.96	131.83	132.08	0					7	4	2	0	0	0	0.022213	1	50895	50895		81.613	39.519	1	5827000			59056	2538	43102	43435	57577	57577					0.02823511245787813
VLFEYRARR	9	Unmodified	_VLFEYRARR_					0	0	0		ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2;ENST00000575192.1_1_17:4877670-4880473:-|nuORF;ENST00000572326.1_1_17:4876509-4881847:-|nuORF	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	403.28118896484375	3	403.899885	1208.67783	-0.70867	-0.00028623	0.99068	0.00040014	0.28201	0.00011391	403.90027350686853	23.847	0.25341	23.847	23.687	23.94	0					10	4	3	0	0	0	0.76106	1	6560	6560		9.544	5.6676	1	1753800			59057	2807	43103	43436	57578	57578					0.0818332061971887
VLFFDNVLV	9	Unmodified	_VLFFDNVLV_					0	0	0			REV__ENSG00000104408|ENST00000220849|EIF3E	REV__ENSG00000104408|ENST00000220849|EIF3E	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1968383789062	2	533.302593	1064.59063	-0.91138	-0.00048604	0.98669	0.0005262	0.075305	4.016E-05	533.3035196507337	133.69	1.1152	133.69	133.51	134.62	0					27	21	2	0	0	0	0.050875	1	51561	51561		74.423	18.246	1	16484000	+		59058	17321	43104	43437	57579	57579					0.06092101625449686
VLFFDNVLV	9	Unmodified	_VLFFDNVLV_					0	0	0			REV__ENSG00000104408|ENST00000220849|EIF3E	REV__ENSG00000104408|ENST00000220849|EIF3E	MULTI-SECPEP	A375_MHC_IP_R2	2	533.1970825195312	2	533.302593	1064.59063	-0.6626	-0.00035337	0.044567	2.3768E-05	-0.61803	-0.0003296	533.302561533499	133.56	0.40471	133.72	133.55	133.96	0.16487					18	7	4	0	0	0	0.050875	1	52536	52536		85.357	14.223	1	19320000	+		59059	17321	43104	43437	57580	57580					0.06092101625449686
VLFFFFSEM	9	Unmodified	_VLFFFFSEM_					0	0	0		ENST00000487084.1_1_7:105550697-105550985:+|nuORF	ENST00000487084.1_1_7:105550697-105550985:+|nuORF	ENST00000487084.1_1_7:105550697-105550985:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	584.1531982421875	2	583.783179	1165.5518	-0.38184	-0.00022291	0.71776	0.00041901	0.33592	0.0001961	583.7837388235083	70.314	0.81393	71.048	70.488	71.302	0.73421					31	15	3	0	0	0	0.3054	1	26603	26603		30.225	0	1	5278500			59060	12591	43105	43438	57581	57581					-0.024349470005518015
VLFFVLFFARR	11	Unmodified	_VLFFVLFFARR_					0	0	0			REV__ENSG00000197563|ENST00000640252|PIGN	REV__ENSG00000197563|ENST00000640252|PIGN	MULTI-MSMS	A375_MHC_IP_R1	1	472.6888427734375	3	472.283447	1413.82851	-0.66844	-0.00031569	0.65253	0.00030818	-0.015914	-7.516E-06	472.2836553186912	132.18	1.4628	132.18	131.13	132.59	0					107	28	5	0	0	0	0.73881	1	50630	50630		0.50596	0	1	80566000	+		59061	22299	43106	43439	57582	57582					0.13815087278544524
VLFGEITRL	9	Unmodified	_VLFGEITRL_					0	0	0		ENST00000478866.5_1_1:161172175-161179984:+|nuORF;nc|ENSG00000158864|O75306-2|NDUFS2;ENSG00000158864|ENST00000676972|NDUFS2;ENST00000483804.5_1_1:161179060-161183980:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	524.7131958007812	2	524.313492	1046.61243	-0.45046	-0.00023618	-4.33	-0.0022703	-4.7805	-0.0025065	524.3132771867133	100.74	0.65868	100.74	100.38	101.04	0					23	12	3	0	0	0	0.41879	1	37101	37101		23.79	3.3752	1	1275600			59062	6337	43107	43440	57583	57583					0.09098906374038052
VLFGEITRL	9	Unmodified	_VLFGEITRL_					0	0	0		ENST00000478866.5_1_1:161172175-161179984:+|nuORF;nc|ENSG00000158864|O75306-2|NDUFS2;ENSG00000158864|ENST00000676972|NDUFS2;ENST00000483804.5_1_1:161179060-161183980:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	524.7127075195312	2	524.313492	1046.61243	-0.27945	-0.00014652	-2.0789	-0.00109	-2.3583	-0.0012365	524.3128519028304	99.923	0.659	100.69	100.17	100.83	0.76278					15	12	2	0	0	0	0.31062	1	37930	37930		29.841	5.82	1	1422600			59063	6337	43107	43440	57584	57584					0.09098906374038052
VLFGLLREV	9	Unmodified	_VLFGLLREV_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;ENST00000569935.1_1_16:72137048-72138114:+|nuORF	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-SECPEP	A375_MHC_IP_R1	1	523.7028198242188	2	523.32386	1044.63317	-0.45524	-0.00023824	0.58624	0.0003068	0.13101	6.856E-05	523.8255963934563	118.55	0.50813	118.55	118.42	118.93	0					16	9	2	0	0	0	0.20059	1	43601	43601		51.415	7.6428	1	25091000			59064	5186	43108	43441	57585	57585					0.1126349675369056
VLFGLLREV	9	Unmodified	_VLFGLLREV_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;ENST00000569935.1_1_16:72137048-72138114:+|nuORF	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-SECPEP	A375_MHC_IP_R2	2	523.7252807617188	2	523.32386	1044.63317	-0.42494	-0.00022238	-0.078364	-4.101E-05	-0.5033	-0.00026339	523.3238065765559	117.5	0.5551	118.16	117.79	118.34	0.65962					22	10	3	0	0	0	0.090157	1	44414	44414		67.838	7.7643	1	16657000			59065	5186	43108	43441	57586	57586					0.1126349675369056
VLFGTKTNTL	10	Unmodified	_VLFGTKTNTL_					0	0	0			REV__NKX2-2|p.S11L|1|0.4|ENSG00000125820|chr20:21513638-21513638|G/A|missense_variant	REV__NKX2-2|p.S11L|1|0.4|ENSG00000125820|chr20:21513638-21513638|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	547.7160034179688	2	547.316232	1092.61791	-1.222	-0.00066883	-0.029253	-1.6011E-05	-1.2513	-0.00068484	547.3161529636999	53.784	1.1246	54.535	53.944	55.068	0.75105					31	21	3	0	0	0	0.42954	1	20310	20310		34.402	0	1	6940600	+		59066	27608	43109	43442	57587	57587					0.0753058516584133
VLFGVETHV	9	Unmodified	_VLFGVETHV_					0	0	0		ENSG00000066583|ENST00000173527|ISOC1	ENSG00000066583|ENST00000173527|ISOC1	ENSG00000066583|ENST00000173527|ISOC1	MULTI-SECPEP	A375_MHC_IP_R1	1	501.1767883300781	2	500.776742	999.538931	-0.38482	-0.00019271	0.21163	0.00010598	-0.17319	-8.673E-05	500.7764430005332	75.539	1.2094	75.539	75.11	76.319	0					49	23	3	0	0	0	0.07754	1	27505	27505		64.236	19.829	1	8387200			59067	1415	43110	43443	57588	57588					0.03914357931557788
VLFGVETHV	9	Unmodified	_VLFGVETHV_					0	0	0		ENSG00000066583|ENST00000173527|ISOC1	ENSG00000066583|ENST00000173527|ISOC1	ENSG00000066583|ENST00000173527|ISOC1	MULTI-SECPEP	A375_MHC_IP_R2	2	501.1766052246094	2	500.776742	999.538931	-0.64443	-0.00032272	0.51755	0.00025918	-0.12688	-6.3538E-05	500.7767187584211	74.653	1.0147	75.39	75.06	76.075	0.73752					39	19	4	0	0	0	0.033126	1	28302	28302		97.075	66.85	1	10773000			59068	1415	43110	43443	57589	57589					0.03914357931557788
VLFHHWER	8	Unmodified	_VLFHHWER_					0	0	0			REV__PEBP1|p.P79L|1|0.27|ENSG00000089220|chr12:118138139-118138139|C/T|missense_variant	REV__PEBP1|p.P79L|1|0.27|ENSG00000089220|chr12:118138139-118138139|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	562.69287109375	2	562.293425	1122.5723	-0.69562	-0.00039114	-0.15096	-8.4885E-05	-0.84658	-0.00047603	562.2933041078107	132.41	0.20363	132.41	132.33	132.54	0					7	3	3	0	0	0	0.72008	1	51080	51080		28.487	6.7402	1	7304000	+		59069	16909	43111	43444	57590	57590					0.015914044941155225
VLFHHWER	8	Unmodified	_VLFHHWER_					0	0	0			REV__PEBP1|p.P79L|1|0.27|ENSG00000089220|chr12:118138139-118138139|C/T|missense_variant	REV__PEBP1|p.P79L|1|0.27|ENSG00000089220|chr12:118138139-118138139|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	562.6932373046875	2	562.293425	1122.5723	-0.52836	-0.00029709	0.36621	0.00020592	-0.16215	-9.1177E-05	562.2935572240818	132.24	0.3071	132.43	132.3	132.61	0.18953					8	5	2	0	0	0	0.76654	1	52044	52044		15.847	15.847	1	8375900	+		59070	16909	43111	43444	57591	57591					0.015914044941155225
VLFHHWER	8	Unmodified	_VLFHHWER_					0	0	0			REV__PEBP1|p.P79L|1|0.27|ENSG00000089220|chr12:118138139-118138139|C/T|missense_variant	REV__PEBP1|p.P79L|1|0.27|ENSG00000089220|chr12:118138139-118138139|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	562.293425	1122.5723	-0.69562	-0.00039114	-0.15096	-8.4885E-05	-0.84658	-0.00047603	562.2933041078107	132.41	0.20363	132.41	132.33	132.54	0	-0.010477	-0.00011131	NaN	28.487	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7304000	+		59071	16909	43111	43444							0.015914044941155225
VLFHHWER	8	Unmodified	_VLFHHWER_					0	0	0			REV__PEBP1|p.P79L|1|0.27|ENSG00000089220|chr12:118138139-118138139|C/T|missense_variant	REV__PEBP1|p.P79L|1|0.27|ENSG00000089220|chr12:118138139-118138139|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	562.293425	1122.5723	-0.52836	-0.00029709	0.36621	0.00020592	-0.16215	-9.1177E-05	562.2935572240818	132.24	0.3071	132.43	132.3	132.61	0.18953	0.010477	0.00047029	NaN	28.487	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8375900	+		59072	16909	43111	43444							0.015914044941155225
VLFIALALVE	10	Unmodified	_VLFIALALVE_					0	0	0		nc|ENSG00000141258|O43147-5|SGSM2;nc|ENSG00000141258|O43147|SGSM2;ENSG00000141258|ENST00000268989|SGSM2;ENST00000572841.1_1_17:2279931-2282811:+|nuORF;ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENSG00000167037|ENST00000400358|SGSM1;ENST00000480523.1_1_22:25240737-25320238:+|nuORF;nc|ENSG00000167037|Q2NKQ1|SGSM1;nc|ENSG00000167037|Q2NKQ1-3|SGSM1	nc|ENSG00000141258|O43147-5|SGSM2;ENST00000473458.5_1_22:25240737-25320238:+|nuORF	nc|ENSG00000141258|O43147-5|SGSM2	MSMS	A375_MHC_IP_R1	1	544.2622680664062	2	544.341718	1086.66888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.6	1	149.6	149.1	150.1	0								0	0	0	0.1562	1	57087	57087		1.6526	0	1				59073	5223;7149	43112	43445	57592	57592					0.12901534210686805
VLFIKKVKK	9	Unmodified	_VLFIKKVKK_					0	0	0		tr|U7SXH2|U7SXH2_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00954PE=3SV=1	tr|U7SXH2|U7SXH2_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00954PE=3SV=1	tr|U7SXH2|U7SXH2_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00954PE=3SV=1	MSMS	A375_MHC_IP_R2	2	551.9428100585938	2	551.88917	1101.76379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.55	1	116.24	115.74	116.74	0.68999								0	0	0	0.15486	1	43558	43558		2.3027	1.7012	1				59074	29828	43113	43446	57593	57593					0.21697512472542257
VLFKDPVSV	9	Unmodified	_VLFKDPVSV_					0	0	0		ENSG00000158008|ENST00000374280|EXTL1	ENSG00000158008|ENST00000374280|EXTL1	ENSG00000158008|ENST00000374280|EXTL1	MULTI-SECPEP	A375_MHC_IP_R2	2	502.69464111328125	2	502.294768	1002.57498	-0.61985	-0.00031135	-0.27555	-0.00013841	-0.8954	-0.00044976	502.29439878877815	76.586	0.91112	77.327	77.045	77.956	0.74052					25	17	2	0	0	0	0.053555	1	29099	29099		90.135	37.867	1	8752900			59075	6281	43114	43447	57594	57594					0.07379815108424737
VLFLGAWSL	9	Unmodified	_VLFLGAWSL_					0	0	0		ENST00000262376.10_1_16:4925091-4925301:+|nuORF	ENST00000262376.10_1_16:4925091-4925301:+|nuORF	ENST00000262376.10_1_16:4925091-4925301:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	503.1661376953125	2	503.292028	1004.5695	-0.63081	-0.00031748	0.52157	0.0002625	-0.10924	-5.4981E-05	503.2923608912085	66.808	0.81921	66.808	66.529	67.348	0					26	15	2	0	0	0	0.3243	1	24189	24189		28.487	5.3384	1	1319900			59076	10301	43115	43448	57595	57595					0.06740136316591361
VLFLGAWSL	9	Unmodified	_VLFLGAWSL_					0	0	0		ENST00000262376.10_1_16:4925091-4925301:+|nuORF	ENST00000262376.10_1_16:4925091-4925301:+|nuORF	ENST00000262376.10_1_16:4925091-4925301:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1659851074219	2	503.292028	1004.5695	-0.84174	-0.00042364	1.3279	0.00066831	0.48613	0.00024467	503.29267005661023	65.78	0.81589	66.518	66.273	67.089	0.73811					25	15	2	0	0	0	0.3243	1	25015	25015		44.407	2.3125	1	1182900			59077	10301	43115	43448	57596	57596					0.06740136316591361
VLFLGMSPRRL	11	Unmodified	_VLFLGMSPRRL_					0	0	0		ENST00000340850.9_1_1:6537653-6550520:-|nuORF	ENST00000340850.9_1_1:6537653-6550520:-|nuORF	ENST00000340850.9_1_1:6537653-6550520:-|nuORF	MSMS	A375_MHC_IP_R2	2	644.883544921875	2	644.88155	1287.74855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.54	1	124.86	124.36	125.36	0.32969								0	0	0	0.16108	1	48203	48203		13.042	0.80181	1				59078	10861	43116	43449	57597	57597					0.11618277613047212
VLFLLLVLVVI	11	Unmodified	_VLFLLLVLVVI_					0	0	0		ENSG00000146072|ENST00000296861|TNFRSF21	ENSG00000146072|ENST00000296861|TNFRSF21	ENSG00000146072|ENST00000296861|TNFRSF21	MSMS	A375_MHC_IP_R1	1	414.6488037109375	3	414.292949	1239.85702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.53	1	144.53	144.03	145.03	0								0	0	0	0.1636	1	55422	55422		0	0	1				59079	5603	43117	43450	57598	57598					0.24668392135095019
VLFMVVCTL	9	Unmodified	_VLFMVVCTL_					0	0	0			REV__ENSG00000108433|ENST00000640051|GOSR2	REV__ENSG00000108433|ENST00000640051|GOSR2	MSMS	A375_MHC_IP_R2	2	512.7491455078125	2	512.782124	1023.5497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.71	1	115.4	114.9	115.9	0.68999								0	0	0	0.15486	1	43237	43237		13.508	0.97634	1		+		59080	17531	43118	43451	57599	57599					0.03886300989984193
VLFNRWWWRYD	11	Unmodified	_VLFNRWWWRYD_					0	0	0			REV__ENST00000479591.1_1_20:30749036-30753244:+|nuORF	REV__ENST00000479591.1_1_20:30749036-30753244:+|nuORF	MSMS	A375_MHC_IP_R2	2	547.6832275390625	3	547.608882	1639.80482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.339	1	83.082	82.582	83.582	0.74293								0	0	0	0.16351	1	31277	31277		0.45452	0.35968	1		+		59081	17162	43119	43452	57600	57600					0.010506217740612556
VLFPEPLTW	9	Unmodified	_VLFPEPLTW_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-SECPEP	A375_MHC_IP_R1	1	1100.97314453125	1	1101.59791	1100.59063	-0.15867	-0.0001748	-0.058531	-6.4478E-05	-0.21721	-0.00023927	1101.597556503265	132.41	0.40704	132.41	132.28	132.69	0					19	7	4	0	0	0	0.4261	1	51145	51145		37.974	23.136	1	68467000			59082	5163	43120	43453	57601	57601					0.04436101625447009
VLFPEPLTW	9	Unmodified	_VLFPEPLTW_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-MSMS	A375_MHC_IP_R2	2	551.7021484375	2	551.302593	1100.59063	-0.73989	-0.0004079	0.58086	0.00032023	-0.15903	-8.7674E-05	551.303004063518	132.24	0.91501	132.43	132.05	132.97	0.18953					41	17	5	0	0	0	0.0099443	1	52021	52021		120.45	61.772	1	76890000			59083	5163	43120	43453	57602	57602					0.04436101625447009
VLFPEPLTW	9	Unmodified	_VLFPEPLTW_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-MATCH	A375_MHC_IP_R2	2		1	1101.59791	1100.59063	0.14335	0.00015791	-0.28371	-0.00031253	-0.14036	-0.00015461	1101.5976064104354	132.24	0.46027	132.43	132.2	132.66	0.18953	0.010477	-0.00012975	NaN	37.974	17	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64993000			59084	5163	43120	43453							0.04436101625447009
VLFPNLKTV	9	Unmodified	_VLFPNLKTV_					0	0	0		BNC1|p.S815Pfs*20|1|0.28|ENSG00000169594|chr15:83257985-83257985|G/-|frameshift_variant;ENSG00000169594|ENST00000345382|BNC1	BNC1|p.S815Pfs*20|1|0.28|ENSG00000169594|chr15:83257985-83257985|G/-|frameshift_variant	BNC1|p.S815Pfs*20|1|0.28|ENSG00000169594|chr15:83257985-83257985|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	516.2184448242188	2	515.81841	1029.62227	-0.51637	-0.00026635	-0.39802	-0.00020531	-0.91439	-0.00047166	515.818342411663	89.416	0.55904	89.416	89.171	89.73	0					15	10	2	0	0	0	0.035419	1	32864	32864		70.332	24.632	1	1223900			59085	242	43121	43454	57603	57603					0.10864094379394373
VLFPNLKTV	9	Unmodified	_VLFPNLKTV_					0	0	0		BNC1|p.S815Pfs*20|1|0.28|ENSG00000169594|chr15:83257985-83257985|G/-|frameshift_variant;ENSG00000169594|ENST00000345382|BNC1	BNC1|p.S815Pfs*20|1|0.28|ENSG00000169594|chr15:83257985-83257985|G/-|frameshift_variant	BNC1|p.S815Pfs*20|1|0.28|ENSG00000169594|chr15:83257985-83257985|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	515.6461181640625	2	515.81841	1029.62227	-0.69802	-0.00036005	-1.1415	-0.00058882	-1.8396	-0.00094888	515.8183184264094	88.5	0.70985	89.232	88.925	89.635	0.7318					21	13	2	0	0	0	0.67483	1	33596	33596		10.074	0	1	821420			59086	242	43121	43454	57604	57604					0.10864094379394373
VLFQELDR	8	Unmodified	_VLFQELDR_					0	0	0		ENSG00000151148|ENST00000342494|UBE3B;nc|ENSG00000151148|Q7Z3V4-2|UBE3B;UBE3B|p.D633N|1|0.09|ENSG00000151148|chr12:109511244-109511244|G/A|missense_variant	ENSG00000151148|ENST00000342494|UBE3B	ENSG00000151148|ENST00000342494|UBE3B	MULTI-SECPEP	A375_MHC_IP_R1	1	510.9826354980469	2	510.279649	1018.54475	-0.49341	-0.00025178	-0.13131	-6.7006E-05	-0.62472	-0.00031878	510.27981032569346	32.049	0.25763	32.049	31.87	32.127	0					8	4	2	0	0	0	0.97021	1	10341	10341		15.847	5.0233	1	1398700			59087	5882	43122	43455	57605	57605					0.03621456443227089
VLFRGGPRGL	10	Unmodified	_VLFRGGPRGL_					0	0	0		ENSG00000124783|ENST00000244763|SSR1;nc|ENSG00000124783|P43307-2|SSR1;ENST00000483409.1_1_6:7303794-7313353:-|nuORF	ENSG00000124783|ENST00000244763|SSR1	ENSG00000124783|ENST00000244763|SSR1	MULTI-MSMS	A375_MHC_IP_R2	2	358.6069030761719	3	357.885576	1070.6349	-0.010523	-3.7659E-06	0.12089	4.3267E-05	0.11037	3.9501E-05	357.8855555585351	47.122	0.40894	47.883	47.664	48.073	0.76128					15	7	3	0	0	0	0.66857	1	17659	17659		15.739	2.1238	1	3553400			59088	3928	43123	43456	57606	57606					0.10240550562321005
VLFRGGPRGLL	11	Unmodified	_VLFRGGPRGLL_					0	0	0		ENSG00000124783|ENST00000244763|SSR1;nc|ENSG00000124783|P43307-2|SSR1;ENST00000483409.1_1_6:7303794-7313353:-|nuORF	ENSG00000124783|ENST00000244763|SSR1	ENSG00000124783|ENST00000244763|SSR1	MULTI-MSMS	A375_MHC_IP_R1	1	395.9803771972656	3	395.580264	1183.71896	0.40761	0.00016124	-0.097194	-3.8448E-05	0.31041	0.00012279	395.58017720379087	69.689	0.70768	69.689	69.427	70.135	0					33	13	4	0	0	0	0.30351	1	25284	25284		46.475	9.4006	1	7702000			59089	3928	43124	43457	57607	57607					0.13445081659233438
VLFRGGPRGLL	11	Unmodified	_VLFRGGPRGLL_					0	0	0		ENSG00000124783|ENST00000244763|SSR1;nc|ENSG00000124783|P43307-2|SSR1;ENST00000483409.1_1_6:7303794-7313353:-|nuORF	ENSG00000124783|ENST00000244763|SSR1	ENSG00000124783|ENST00000244763|SSR1	MULTI-MSMS	A375_MHC_IP_R2	2	395.98040771484375	3	395.580264	1183.71896	-0.027299	-1.0799E-05	0.029293	1.1588E-05	0.0019935	7.886E-07	395.5802495240199	68.721	0.65868	69.456	69.171	69.83	0.73512					30	12	3	0	0	0	0.23491	1	26004	26004		51.765	27.964	1	9965300			59090	3928	43124	43457	57608	57608					0.13445081659233438
VLFRGGPRGLL	11	Unmodified	_VLFRGGPRGLL_					0	0	0		ENSG00000124783|ENST00000244763|SSR1;nc|ENSG00000124783|P43307-2|SSR1;ENST00000483409.1_1_6:7303794-7313353:-|nuORF	ENSG00000124783|ENST00000244763|SSR1	ENSG00000124783|ENST00000244763|SSR1	MULTI-MATCH	A375_MHC_IP_R2	2		3	395.580264	1183.71896	-0.037507	-1.4837E-05	-0.033977	-1.3441E-05	-0.071484	-2.8278E-05	395.5802822244827	69.322	0.20138	70.056	69.931	70.132	0.73421	0.18349	5.51E-05	NaN	46.475	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	635650			59091	3928	43124	43457							0.13445081659233438
VLFRIFIIW	9	Unmodified	_VLFRIFIIW_					0	0	0		ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1	ENSG00000104853|ENST00000337392|CLPTM1	ENSG00000104853|ENST00000337392|CLPTM1	MSMS	A375_MHC_IP_R2	2	603.933837890625	2	603.87352	1205.73249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.958	1	94.703	94.203	95.203	0.74474								0	0	0	0.15486	1	35713	35713		5.2307	0.90143	1				59092	2542	43125	43458	57609	57609					0.13784939438437505
VLFSDFMSL	9	Unmodified	_VLFSDFMSL_					0	0	0		ENST00000548792.1_1_12:120902024-120902162:-|nuORF	ENST00000548792.1_1_12:120902024-120902162:-|nuORF	ENST00000548792.1_1_12:120902024-120902162:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	529.1953125	2	529.764986	1057.51542	-0.5571	-0.00029513	-2.6053	-0.0013802	-3.1624	-0.0016753	529.7635784187474	33.391	0.30635	33.391	33.291	33.597	0					7	5	2	0	0	0	0.69504	1	10881	10881		12.532	1.7076	1	662400			59093	13354	43126	43459	57610	57610					-0.011038238972560066
VLFSHPPRV	9	Unmodified	_VLFSHPPRV_					0	0	0			REV__nc|ENSG00000185513|Q9Y468-3|L3MBTL1	REV__nc|ENSG00000185513|Q9Y468-3|L3MBTL1	MULTI-SECPEP	A375_MHC_IP_R2	2	526.7056884765625	2	526.306001	1050.59745	-0.66911	-0.00035216	-0.52002	-0.00027369	-1.1891	-0.00062584	526.3057060945602	51.48	0.40543	52.232	52.017	52.423	0.75225					12	7	2	0	0	0	0.63327	1	19413	19413		18.146	0	1	1506700	+		59094	21897	43127	43460	57611	57611					0.07417459296698325
VLFSSPPVILL	11	Unmodified	_VLFSSPPVILL_					0	0	0		ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	MULTI-SECPEP	A375_MHC_IP_R1	1	593.2678833007812	2	592.8681	1183.72165	-0.63195	-0.00037466	0.28632	0.00016975	-0.34563	-0.00020491	592.8682589779314	134.55	0.65898	134.55	134.37	135.03	0					38	12	5	0	0	0	8.8038E-05	1	51887	51887		166.45	77.544	1	115320000			59095	7654	43128	43461	57612	57612					0.13713492273518568
VLFSSPPVILL	11	Unmodified	_VLFSSPPVILL_					0	0	0		ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	MULTI-SECPEP	A375_MHC_IP_R2	2	593.2681274414062	2	592.8681	1183.72165	-0.46223	-0.00027404	0.12646	7.4972E-05	-0.33578	-0.00019907	592.8681502132929	134.38	1.2743	134.52	134.13	135.41	0.13901					43	24	4	0	0	0	9.898E-07	1	52865	52865		188.58	99.673	1	97875000			59096	7654	43128	43461	57613	57613					0.13713492273518568
VLFSYKHKLLI	11	Unmodified	_VLFSYKHKLLI_					0	0	0			REV__ENSG00000154122|ENST00000284268|ANKH	REV__ENSG00000154122|ENST00000284268|ANKH	MULTI-MSMS	A375_MHC_IP_R2	2	454.68365478515625	3	454.283224	1359.82784	-0.20011	-9.0905E-05	0.78326	0.00035582	0.58315	0.00026492	454.6182821896861	131.61	1.016	131.8	131.44	132.46	0.18953					37	19	3	0	0	0	0.73881	1	51793	51793		0.50596	0	1	4256300	+		59097	19864	43129	43462	57614	57614					0.1623224783884325
VLFTGVKEV	9	Unmodified	_VLFTGVKEV_					0	0	0		ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENSG00000089006|ENST00000377759|SNX5	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	496.6941833496094	2	496.294768	990.574983	-0.41346	-0.0002052	-2.611	-0.0012958	-3.0245	-0.001501	496.2931968475645	64.442	0.96584	65.182	64.954	65.92	0.74022					29	18	3	0	0	0	0.27114	1	24435	24435		53.404	7.3831	1	4118800			59098	12644	43130	43463	57615	57615					0.07931815108429419
VLGAITSV	8	Unmodified	_VLGAITSV_					0	0	0		ENSG00000120705|ENST00000360541|ETF1;nc|ENSG00000120705|P62495-2|ETF1	ENSG00000120705|ENST00000360541|ETF1	ENSG00000120705|ENST00000360541|ETF1	MULTI-SECPEP	A375_MHC_IP_R1	1	759.8604125976562	1	759.461081	758.453805	-0.58492	-0.00044422	0.033231	2.5238E-05	-0.55169	-0.00041898	759.4609673328182	76.84	0.51115	76.84	76.622	77.133	0					15	9	2	0	0	0	0.10309	1	28028	28028		93.883	19.487	1	3157100			59099	3680	43131	43464	57616	57616					0.06491612465754315
VLGAITSV	8	Unmodified	_VLGAITSV_					0	0	0		ENSG00000120705|ENST00000360541|ETF1;nc|ENSG00000120705|P62495-2|ETF1	ENSG00000120705|ENST00000360541|ETF1	ENSG00000120705|ENST00000360541|ETF1	MULTI-MATCH	A375_MHC_IP_R2	2		1	759.461081	758.453805	-0.88374	-0.00067116	0.46399	0.00035238	-0.41975	-0.00031878	759.4613499784035	76.064	0.5575	76.805	76.487	77.045	0.74052	-0.017652	0.00019169	NaN	93.883	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3696700			59100	3680	43131	43464							0.06491612465754315
VLGANLIFVL	10	Unmodified	_VLGANLIFVL_					0	0	0			REV__ENSG00000135953|ENST00000258436|MFSD9	REV__ENSG00000135953|ENST00000258436|MFSD9	MSMS	A375_MHC_IP_R2	2	529.9622192382812	2	529.83406	1057.65357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.82	1	57.57	57.07	58.07	0.75015								0	0	0	0.15348	1	21479	21479		10.824	0	1		+		59101	18902	43132	43465	57617	57617					0.12704667413527204
VLGCMHHC	8	Unmodified	_VLGCMHHC_					0	0	0			REV__ENST00000453424.6_1_10:45954608-45956679:-|nuORF	REV__ENST00000453424.6_1_10:45954608-45956679:-|nuORF	MSMS	A375_MHC_IP_R2	2	450.1713562011719	2	450.187868	898.361184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.435	1	43.208	42.708	43.708	0.7724								0	0	0	0.16876	1	15786	15786		2.8892	0	1		+		59102	24909	43133	43466	57618	57618					-0.09206255135279662
VLGEDEAIV	9	Unmodified	_VLGEDEAIV_					0	0	0		nc|ENSG00000176994|Q8TEV9-2|SMCR8;ENSG00000176994|ENST00000406438|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	MULTI-MSMS	A375_MHC_IP_R1	1	472.6822204589844	2	472.75039	943.486227	-0.43101	-0.00020376	1.4184	0.00067056	0.98741	0.0004668	472.7508794195289	54.796	0.40531	54.796	54.67	55.075	0					9	7	2	0	0	0	0.60623	1	19542	19542		14.582	1.0738	1	1287700			59103	8052	43134	43467	57619	57619					0.012223550780845471
VLGEFLKEI	9	Unmodified	_VLGEFLKEI_					0	0	0		ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	MULTI-SECPEP	A375_MHC_IP_R1	1	524.707763671875	2	524.307875	1046.6012	-0.44404	-0.00023281	0.59153	0.00031014	0.14749	7.7329E-05	524.3081153001307	104.51	0.81006	104.51	104.24	105.05	0					34	15	3	0	0	0	0.062502	1	38344	38344		83.429	23.355	1	8786900			59104	2413	43135	43468	57620	57620					0.07976084279903262
VLGEFLKEI	9	Unmodified	_VLGEFLKEI_					0	0	0		ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	MULTI-SECPEP	A375_MHC_IP_R2	2	524.70751953125	2	524.307875	1046.6012	-0.48935	-0.00025657	0.33294	0.00017456	-0.15641	-8.2008E-05	524.3079560851386	103.53	0.91248	104.29	103.99	104.9	0.76428					37	17	3	0	0	0	0.074405	1	39183	39183		70.332	11.653	1	8004300			59105	2413	43135	43468	57621	57621					0.07976084279903262
VLGELVPRL	9	Unmodified	_VLGELVPRL_					0	0	0		nc|ENSG00000136813|Q5VYK3|ECPAS;ENSG00000136813|ENST00000684092|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-SECPEP	A375_MHC_IP_R1	1	498.7156677246094	2	498.316035	994.617516	-0.45308	-0.00022578	-0.16594	-8.269E-05	-0.61902	-0.00030847	498.31595283106554	94.186	0.50399	94.186	93.89	94.394	0					14	9	2	0	0	0	0.16764	1	34621	34621		51.63	29.883	1	1641300			59106	4820	43136	43469	57622	57622					0.11999210236660929
VLGELVPRL	9	Unmodified	_VLGELVPRL_					0	0	0		nc|ENSG00000136813|Q5VYK3|ECPAS;ENSG00000136813|ENST00000684092|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-SECPEP	A375_MHC_IP_R2	2	498.7166442871094	2	498.316035	994.617516	-0.42142	-0.00021	0.81309	0.00040517	0.39167	0.00019517	498.3164476033518	93.186	0.76031	93.925	93.596	94.356	0.73902					21	14	2	0	0	0	0.14572	1	35435	35435		62.573	30.267	1	2027700			59107	4820	43136	43469	57623	57623					0.11999210236660929
VLGGIVGI	8	Unmodified	_VLGGIVGI_					0	0	0		tr|U7T5W5|U7T5W5_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00155PE=4SV=1	tr|U7T5W5|U7T5W5_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00155PE=4SV=1	tr|U7T5W5|U7T5W5_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00155PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	727.872314453125	1	727.471252	726.463976	-0.68437	-0.00049786	0.85237	0.00062008	0.168	0.00012222	727.4718136288843	84.694	0.60854	85.43	85.12	85.729	0.73601					24	11	3	0	0	0	0.37475	1	32172	32172		52.334	0	1	4703900			59108	30034	43137	43470	57624	57624					0.08980220191006083
VLGGKAFLEHL	11	Unmodified	_VLGGKAFLEHL_					0	0	0		ENSG00000101624|ENST00000262127|CEP76;ENST00000590143.5_1_18:12662154-12700964:-|nuORF	ENSG00000101624|ENST00000262127|CEP76	ENSG00000101624|ENST00000262127|CEP76	MULTI-MSMS	A375_MHC_IP_R1	1	395.6330261230469	3	395.232641	1182.67609	0.15084	5.9619E-05	0.51604	0.00020396	0.66689	0.00026358	395.23278083040526	72.194	0.55675	72.194	71.968	72.524	0					22	10	3	0	0	0	0.063241	1	26284	26284		62.78	36.783	1	5229000			59109	2314	43138	43471	57625	57625					0.09206266811111163
VLGGKAFLEHL	11	Unmodified	_VLGGKAFLEHL_					0	0	0		ENSG00000101624|ENST00000262127|CEP76;ENST00000590143.5_1_18:12662154-12700964:-|nuORF	ENSG00000101624|ENST00000262127|CEP76	ENSG00000101624|ENST00000262127|CEP76	MULTI-MSMS	A375_MHC_IP_R2	2	395.6327209472656	3	395.232641	1182.67609	-0.34267	-0.00013544	0.69622	0.00027517	0.35354	0.00013973	395.23291289735647	71.23	0.60838	71.964	71.706	72.314	0.73421					19	11	2	0	0	0	0.11203	1	27019	27019		55.467	34.596	1	4999300			59110	2314	43138	43471	57626	57626					0.09206266811111163
VLGGLKLKANL	11	Unmodified	_VLGGLKLKANL_					0	0	0		BOD1L1|p.S2975Lfs*72|1|0.17|ENSG00000038219|chr4:13576953-13576953|A/-|frameshift_variant;ENSG00000038219|ENST00000040738|BOD1L1	BOD1L1|p.S2975Lfs*72|1|0.17|ENSG00000038219|chr4:13576953-13576953|A/-|frameshift_variant	BOD1L1|p.S2975Lfs*72|1|0.17|ENSG00000038219|chr4:13576953-13576953|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	562.7221069335938	2	563.371341	1124.72813	-0.37848	-0.00021322	0.37758	0.00021272	-0.00089896	-5.0645E-07	563.371181490408	93.63	0.25409	93.63	93.484	93.738	0					6	4	2	0	0	0	0.98591	1	34399	34399		9.3831	2.0939	1	395900			59111	243	43139	43472	57627	57627					0.17075430224872434
VLGGRAHPV	9	Unmodified	_VLGGRAHPV_					0	0	0			REV__ENST00000367545.7_1_6:144803508-144806543:+|nuORF	REV__ENST00000367545.7_1_6:144803508-144806543:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	905.799560546875	1	905.531561	904.524284	-0.22262	-0.00020159	-4.3903	-0.0039755	-4.6129	-0.0041771	905.5293630272337	115.86	0.60872	116.55	116.04	116.64	0.68999					18	11	2	0	0	0	0.78798	1	43580	43580		7.2892	6.5989	1	9053500	+		59112	23974	43140	43473	57628	57628					0.0682033057407807
VLGGRPRA	8	Unmodified	_VLGGRPRA_					0	0	0			REV__nc|ENSG00000063176|Q9NRA0-4|SPHK2	REV__nc|ENSG00000063176|Q9NRA0-4|SPHK2	MULTI-SECPEP	A375_MHC_IP_R2	2	413.6563415527344	2	413.256311	824.49807	0.070669	2.9205E-05	-0.12559	-5.1899E-05	-0.054917	-2.2695E-05	413.2561589750921	132.7	1.7806	132.87	132.59	134.37	0.16487					82	34	4	0	0	0	0.972	1	52405	52405		0.79363	0	1	129180000	+		59113	16465	43141	43474	57629	57629					0.07880061402602223
VLGHPPLK	8	Unmodified	_VLGHPPLK_					0	0	0			REV__ENST00000540157.1_1_11:73363908-73371898:+|nuORF	REV__ENST00000540157.1_1_11:73363908-73371898:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	431.1708984375	2	430.771263	859.527973	0.039509	1.7019E-05	-0.5206	-0.00022426	-0.48109	-0.00020724	430.77096733183276	35.804	0.56021	35.804	35.573	36.133	0					20	10	3	0	0	0	0.90224	1	11930	11930		26.341	0	1	5860200	+		59114	24645	43142	43475	57630	57630					0.09259000347947222
VLGHPPLK	8	Unmodified	_VLGHPPLK_					0	0	0			REV__ENST00000540157.1_1_11:73363908-73371898:+|nuORF	REV__ENST00000540157.1_1_11:73363908-73371898:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	431.1705627441406	2	430.771263	859.527973	-0.42907	-0.00018483	-0.082714	-3.5631E-05	-0.51179	-0.00022046	430.7711024550468	34.838	0.60563	35.602	35.324	35.929	0.76338					23	11	3	0	0	0	0.90224	1	12593	12593		26.341	0	1	5239400	+		59115	24645	43142	43475	57631	57631					0.09259000347947222
VLGHVEQL	8	Unmodified	_VLGHVEQL_					0	0	0		nc|ENSG00000019144|Q86UU1-3|PHLDB1;ENST00000532517.5_1_11:118498004-118527530:+|nuORF;nc|ENSG00000019144|Q86UU1-2|PHLDB1;ENSG00000019144|ENST00000600882|PHLDB1	nc|ENSG00000019144|Q86UU1-3|PHLDB1	nc|ENSG00000019144|Q86UU1-3|PHLDB1	MULTI-SECPEP	A375_MHC_IP_R1	1	448.1268005371094	2	447.75581	893.497067	-0.01229	-5.5028E-06	-3.9769	-0.0017807	-3.9892	-0.0017862	447.7554895055493	44.121	0.30703	44.121	43.909	44.216	0					7	5	2	0	0	0	0.86263	1	15377	15377		26.884	5.137	1	793800			59116	1051	43143	43476	57632	57632					0.04605802243054313
VLGIVPLFYT	10	Unmodified	_VLGIVPLFYT_					0	0	0			REV__ENST00000531653.5_1_11:47445967-47447800:-|nuORF	REV__ENST00000531653.5_1_11:47445967-47447800:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	561.9837646484375	2	561.333893	1120.65323	-0.41104	-0.00023073	-0.55307	-0.00031046	-0.96411	-0.00054119	561.8344287087784	142.15	0.25342	142.18	142.08	142.33	0.030731					6	4	2	0	0	0	0.72321	1	55586	55586		3.9444	2.1002	1	445210	+		59117	20637	43144	43477	57633	57633					0.09773247693647136
VLGIVVGV	8	Unmodified	_VLGIVVGV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	A375_MHC_IP_R1	1	755.9024658203125	1	755.502552	754.495276	-0.13778	-0.0001041	0.049036	3.7047E-05	-0.088747	-6.7049E-05	755.5024986141982	115.71	0.55904	115.71	115.48	116.04	0					17	10	2	0	0	0	0.37475	1	42541	42541		41.817	9.3636	1	6803900			59118	3941	43145	43478	57634	57634					0.10820793225093439
VLGIVVGV	8	Unmodified	_VLGIVVGV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	A375_MHC_IP_R2	2	755.9990844726562	1	755.502552	754.495276	-0.69323	-0.00052374	0.50689	0.00038296	-0.18634	-0.00014078	755.5030416129688	114.86	0.76709	115.55	115.01	115.78	0.68999					20	14	2	0	0	0	0.37475	1	43355	43355		64.081	11.747	1	5775100			59119	3941	43145	43478	57635	57635					0.10820793225093439
VLGKHTELPV	10	Unmodified	_VLGKHTELPV_					0	0	0		NUP214|p.P1386L|1|0.51|ENSG00000126883|chr9:131197651-131197651|C/T|missense_variant	NUP214|p.P1386L|1|0.51|ENSG00000126883|chr9:131197651-131197651|C/T|missense_variant	NUP214|p.P1386L|1|0.51|ENSG00000126883|chr9:131197651-131197651|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	547.3798217773438	2	546.824224	1091.63389	-0.52937	-0.00028947	1.5344	0.00083903	1.005	0.00054956	547.3269785357217	83.315	0.35697	83.315	83.075	83.432	0					11	6	2	0	0	0	0.87163	1	30397	30397		13.906	8.6092	1	990250			59120	15041	43146	43479	57636	57636					0.09174291402746348
VLGKHTELPV	10	Unmodified	_VLGKHTELPV_					0	0	0		NUP214|p.P1386L|1|0.51|ENSG00000126883|chr9:131197651-131197651|C/T|missense_variant	NUP214|p.P1386L|1|0.51|ENSG00000126883|chr9:131197651-131197651|C/T|missense_variant	NUP214|p.P1386L|1|0.51|ENSG00000126883|chr9:131197651-131197651|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	546.824224	1091.63389	-0.81856	-0.00044761	1.6742	0.0009155	0.85566	0.00046789	546.8257809463287	82.4	0.30555	83.143	82.94	83.246	0.74293	-0.08635	7.6931E-05	NaN	13.906	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	863120			59121	15041	43146	43479							0.09174291402746348
VLGLDVLGNP	10	Unmodified	_VLGLDVLGNP_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-SECPEP	A375_MHC_IP_R1	1	499.1551208496094	2	498.78985	995.565146	-0.37375	-0.00018642	0.68389	0.00034112	0.31014	0.00015469	498.78968663831165	91.781	0.40286	91.781	91.503	91.906	0					10	7	2	0	0	0	0.90853	1	33648	33648		10.824	10.824	1	1150100			59122	4172	43147	43480	57637	57637					0.06718627103043673
VLGLGALGL	9	Unmodified	_VLGLGALGL_					0	0	0		ENSG00000204420|ENST00000649779|MPIG6B;ENST00000466312.5_1_6:31691160-31692010:+|nuORF;nc|ENSG00000204420|O95866-7|MPIG6B;nc|ENSG00000204420|O95866-6|MPIG6B;nc|ENSG00000204420|O95866-2|MPIG6B	ENSG00000204420|ENST00000649779|MPIG6B	ENSG00000204420|ENST00000649779|MPIG6B	MULTI-SECPEP	A375_MHC_IP_R2	2	406.276611328125	2	406.765646	811.516739	-0.26255	-0.0001068	-0.030953	-1.2591E-05	-0.29351	-0.00011939	406.7655552069143	51.804	0.40718	52.557	52.27	52.677	0.75225					12	7	2	0	0	0	0.73662	1	19429	19429		9.3474	0	1	1126100			59123	9441	43148	43481	57638	57638					0.10344178253785685
VLGLGALGL	9	Unmodified	_VLGLGALGL_					0	0	0		ENSG00000204420|ENST00000649779|MPIG6B;ENST00000466312.5_1_6:31691160-31692010:+|nuORF;nc|ENSG00000204420|O95866-7|MPIG6B;nc|ENSG00000204420|O95866-6|MPIG6B;nc|ENSG00000204420|O95866-2|MPIG6B	ENSG00000204420|ENST00000649779|MPIG6B	ENSG00000204420|ENST00000649779|MPIG6B	MULTI-MATCH	A375_MHC_IP_R1	1		2	406.765646	811.516739	-0.40688	-0.0001655	0.41921	0.00017052	0.012328	5.0148E-06	406.76579706963787	52.656	0.55862	52.656	52.438	52.997	0	0.049737	0.00020853	NaN	9.3474	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1099100			59124	9441	43148	43481							0.10344178253785685
VLGLTWFIN	9	Unmodified	_VLGLTWFIN_					0	0	0		ENSG00000090020|ENST00000263980|SLC9A1;nc|ENSG00000090020|P19634-2|SLC9A1	ENSG00000090020|ENST00000263980|SLC9A1	ENSG00000090020|ENST00000263980|SLC9A1	MULTI-SECPEP	A375_MHC_IP_R1	1	531.18701171875	2	531.80276	1061.59097	-0.77943	-0.0004145	-3.053	-0.0016236	-3.8325	-0.0020381	532.3025714009203	80.534	0.60745	80.534	80.238	80.846	0					15	11	2	0	0	0	0.3607	1	29440	29440		34.102	13.688	1	1795200			59125	1941	43149	43482	57639	57639					0.06263521345317713
VLGPKIEAV	9	Unmodified	_VLGPKIEAV_					0	0	0		nc|ENSG00000167674|Q7Z4V5-2|HDGFL2;ENSG00000167674|ENST00000616600|HDGFL2;nc|ENSG00000167674|Q7Z4V5-4|HDGFL2;nc|ENSG00000167674|Q7Z4V5-3|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	MULTI-MSMS	A375_MHC_IP_R2	2	463.6892395019531	2	463.289485	924.564418	-0.75636	-0.00035041	0.070364	3.2599E-05	-0.686	-0.00031781	463.28952003364316	54.594	0.50585	55.345	55.018	55.523	0.75075					14	9	2	0	0	0	0.04447	1	20587	20587		66.457	16.524	1	5245600			59126	7209	43150	43483	57640	57640					0.0991183245398588
VLGPTLKNV	9	Unmodified	_VLGPTLKNV_					0	0	0		ENSG00000177853|ENST00000316045|ZNF518A	ENSG00000177853|ENST00000316045|ZNF518A	ENSG00000177853|ENST00000316045|ZNF518A	MULTI-MSMS	A375_MHC_IP_R1	1	471.19488525390625	2	470.794935	939.575317	-0.27047	-0.00012734	0.30594	0.00014404	0.035469	1.6699E-05	470.79499140459933	52.005	0.76193	52.005	51.625	52.387	0					30	14	3	0	0	0	0.012843	1	18444	18444		92.653	27.418	1	4763400			59127	8113	43151	43484	57641	57641					0.10311234828282068
VLGPTLKNV	9	Unmodified	_VLGPTLKNV_					0	0	0		ENSG00000177853|ENST00000316045|ZNF518A	ENSG00000177853|ENST00000316045|ZNF518A	ENSG00000177853|ENST00000316045|ZNF518A	MULTI-SECPEP	A375_MHC_IP_R2	2	471.1944274902344	2	470.794935	939.575317	-0.71084	-0.00033466	0.016122	7.5903E-06	-0.69472	-0.00032707	470.7949110357828	51.072	0.60723	51.826	51.513	52.12	0.75406					20	11	2	0	0	0	0.061442	1	19205	19205		63.961	21.866	1	4703500			59128	8113	43151	43484	57642	57642					0.10311234828282068
VLGPTPELV	9	Unmodified	_VLGPTPELV_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2;ENST00000496337.1_1_7:141870985-141908039:+|nuORF	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-MSMS	A375_MHC_IP_R1	1	924.5595703125	1	924.54006	923.532783	0.0023069	2.1328E-06	0.27134	0.00025086	0.27364	0.00025299	924.5401324503239	93.508	0.66193	93.508	93.279	93.941	0					25	12	3	0	0	0	0.034481	1	34332	34332		71.134	10.744	1	6813600			59129	9912	43152	43485	57643	57643					0.06795839700032502
VLGPTPELV	9	Unmodified	_VLGPTPELV_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2;ENST00000496337.1_1_7:141870985-141908039:+|nuORF	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-MATCH	A375_MHC_IP_R2	2		1	924.54006	923.532783	-0.22662	-0.00020952	0.21958	0.00020301	-0.0070424	-6.511E-06	924.5400099383819	92.719	0.60693	93.458	93.24	93.847	0.73902	-0.025207	-2.6631E-05	NaN	71.134	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6401400			59130	9912	43152	43485							0.06795839700032502
VLGQRLHLSFP	11	Unmodified	_VLGQRLHLSFP_					0	0	0		ENSG00000172967|ENST00000684488|XKR3	ENSG00000172967|ENST00000684488|XKR3	ENSG00000172967|ENST00000684488|XKR3	MSMS	A375_MHC_IP_R1	1	422.9822082519531	3	422.915423	1265.72444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.37	1	132.37	131.87	132.87	0								0	0	0	0.16334	1	51040	51040		1.3296	0	1				59131	7753	43153	43486	57644	57644					0.10220760451034039
VLGTFLCKTV	10	Unmodified	_VLGTFLCKTV_					0	0	0		nc|ENSG00000160683|P32302-2|CXCR5;ENSG00000160683|ENST00000292174|CXCR5	nc|ENSG00000160683|P32302-2|CXCR5	nc|ENSG00000160683|P32302-2|CXCR5	MULTI-SECPEP	A375_MHC_IP_R2	2	540.666259765625	2	540.809728	1079.6049	-1.0103	-0.00054635	0.85146	0.00046048	-0.1588	-8.5879E-05	540.8102253276351	66.209	1.1745	66.947	66.475	67.649	0.73811					28	22	2	0	0	0	0.87163	1	24931	24931		5.7319	1.7875	1	2687700			59132	6430	43154	43487	57645	57645					0.06828430782070427
VLGTRQNTI	9	Unmodified	_VLGTRQNTI_					0	0	0			REV__ENST00000380667.6_1_9:16583064-16870672:-|nuORF	REV__ENST00000380667.6_1_9:16583064-16870672:-|nuORF	MSMS	A375_MHC_IP_R1	1	501.2178039550781	2	501.290548	1000.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.38	1	131.38	130.88	131.88	0								0	0	0	0.14359	1	50654	50654		28.487	0	1		+		59133	24220	43155	43488	57646	57646					0.06628261191792717
VLGTVIGV	8	Unmodified	_VLGTVIGV_					0	0	0		ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	MULTI-SECPEP	A375_MHC_IP_R1	1	756.7976684570312	1	757.481817	756.47454	-0.60543	-0.0004586	0.34203	0.00025908	-0.2634	-0.00019952	757.4819777333595	95.189	1.6247	95.189	94.853	96.478	0					62	31	3	0	0	0	0.19086	1	35192	35192		78.445	18.65	1	41245000			59134	2775	43156	43489	57647	57647					0.08656202845418193
VLGTVIGV	8	Unmodified	_VLGTVIGV_					0	0	0		ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	MULTI-SECPEP	A375_MHC_IP_R2	2	757.8807373046875	1	757.481817	756.47454	-0.67957	-0.00051476	0.59602	0.00045147	-0.083553	-6.329E-05	757.4821521959462	94.29	1.6234	95.034	94.667	96.29	0.74474					64	31	4	0	0	0	0.15515	1	36044	36044		86.121	11.725	1	37100000			59135	2775	43156	43489	57648	57648					0.08656202845418193
VLGVDFSPV	9	Unmodified	_VLGVDFSPV_					0	0	0		ENST00000398922.6_1_11:62433857-62434520:+|nuORF;ENSG00000214756|ENST00000532971|CSKMT	ENST00000398922.6_1_11:62433857-62434520:+|nuORF	ENST00000398922.6_1_11:62433857-62434520:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	935.4096069335938	1	932.50876	931.501483	-0.053036	-4.9456E-05	-0.24558	-0.00022901	-0.29862	-0.00027846	932.5086605984615	93.904	0.96417	93.904	93.584	94.548	0					53	18	4	0	0	0	0.63811	1	34534	34534		12.532	0.89125	1	26214000			59136	9626	43157	43490	57649	57649					0.03299266665953837
VLGVIWGV	8	Unmodified	_VLGVIWGV_					0	0	0		nc|ENSG00000118707|Q9GZN2-2|TGIF2;ENST00000491113.1_1_20:35234354-35236222:+|nuORF;nc|ENSG00000101084|Q9BUV8-4|RAB5IF;nc|ENSG00000101084|Q9BUV8-3|RAB5IF;ENSG00000101084|ENST00000344795|RAB5IF;nc|ENSG00000101084|Q9BUV8|RAB5IF;nc|ENSG00000101084|Q9BUV8-5|RAB5IF	nc|ENSG00000118707|Q9GZN2-2|TGIF2	nc|ENSG00000118707|Q9GZN2-2|TGIF2	MULTI-SECPEP	A375_MHC_IP_R2	2	843.2865600585938	1	842.513451	841.506175	-0.75401	-0.00063526	1.2235	0.0010308	0.4695	0.00039556	842.5144368427289	129.4	0.35239	129.64	129.47	129.82	0.23946					8	6	2	0	0	0	0.37475	1	50834	50834		52.334	10.517	1	6739900			59137	14564	43158	43491	57650	57650					0.07908195599372903
VLGVIWGV	8	Unmodified	_VLGVIWGV_					0	0	0		nc|ENSG00000118707|Q9GZN2-2|TGIF2;ENST00000491113.1_1_20:35234354-35236222:+|nuORF;nc|ENSG00000101084|Q9BUV8-4|RAB5IF;nc|ENSG00000101084|Q9BUV8-3|RAB5IF;ENSG00000101084|ENST00000344795|RAB5IF;nc|ENSG00000101084|Q9BUV8|RAB5IF;nc|ENSG00000101084|Q9BUV8-5|RAB5IF	nc|ENSG00000118707|Q9GZN2-2|TGIF2	nc|ENSG00000118707|Q9GZN2-2|TGIF2	MULTI-MATCH	A375_MHC_IP_R1	1		1	842.513451	841.506175	-0.54745	-0.00046124	0.64928	0.00054702	0.10182	8.5786E-05	842.5135303160939	129.67	0.20386	129.67	129.55	129.75	0	0.012656	-0.00011132	NaN	52.334	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6643200			59138	14564	43158	43491							0.07908195599372903
VLGVVTGV	8	Unmodified	_VLGVVTGV_					0	0	0		ENSG00000124217|ENST00000244051|MOCS3	ENSG00000124217|ENST00000244051|MOCS3	ENSG00000124217|ENST00000244051|MOCS3	MULTI-SECPEP	A375_MHC_IP_R2	2	743.8658447265625	1	743.466167	742.45889	-0.91837	-0.00068278	-0.18656	-0.0001387	-1.1049	-0.00082148	743.4660713348326	81.741	0.45503	82.484	82.229	82.684	0.74293					13	8	2	0	0	0	0.21481	1	31057	31057		53.576	6.6547	1	2170900			59139	3887	43159	43492	57651	57651					0.07735916328385883
VLGVVTGV	8	Unmodified	_VLGVVTGV_					0	0	0		ENSG00000124217|ENST00000244051|MOCS3	ENSG00000124217|ENST00000244051|MOCS3	ENSG00000124217|ENST00000244051|MOCS3	MULTI-MATCH	A375_MHC_IP_R1	1		1	743.466167	742.45889	-0.39251	-0.00029181	-0.095922	-7.1315E-05	-0.48843	-0.00036313	743.4658573404844	82.628	0.40489	82.628	82.418	82.823	0	0.072278	4.2403E-05	NaN	53.576	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1780300			59140	3887	43159	43492							0.07735916328385883
VLGYVHPDL	9	Unmodified	_VLGYVHPDL_					0	0	0		ENSG00000135956|ENST00000258439|TMEM127	ENSG00000135956|ENST00000258439|TMEM127	ENSG00000135956|ENST00000258439|TMEM127	MULTI-SECPEP	A375_MHC_IP_R2	2	507.2054443359375	2	506.776742	1011.53893	-0.63106	-0.00031981	4.225	0.0021412	3.594	0.0018213	507.2809699764309	68.786	0.40423	69.521	69.221	69.626	0.73511					10	7	2	0	0	0	0.56939	1	26043	26043		26.341	11.76	1	603040			59141	4733	43160	43493	57652	57652					0.03362357931564475
VLHAGPAP	8	Unmodified	_VLHAGPAP_					0	0	0			REV__ENST00000393950.6_2_7:100210228-100210375:+|nuORF	REV__ENST00000393950.6_2_7:100210228-100210375:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	381.618896484375	2	381.218863	760.423173	0.47341	0.00018047	0.12084	4.6067E-05	0.59425	0.00022654	381.2188114852109	35.294	0.50902	35.294	35.064	35.573	0					13	9	2	0	0	0	0.95327	1	11745	11745		11.114	0	1	2391900	+		59142	24300	43161	43494	57653	57653					0.033378788713775975
VLHCICHL	8	Unmodified	_VLHCICHL_					0	0	0			REV__ENST00000219478.10_1_16:4800958-4801270:-|nuORF	REV__ENST00000219478.10_1_16:4800958-4801270:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	469.2026062011719	2	469.240958	936.467363	-0.95561	-0.00044841	3.1827	0.0014935	2.2271	0.001045	469.2421742487219	59.95	0.35289	60.697	60.553	60.906	0.74714					8	6	2	0	0	0	0.77686	1	22734	22734		6.3541	6.3541	1	413510	+		59143	23046	43162	43495	57654	57654					-0.0034117629830916485
VLHDRIVSV	9	Unmodified	_VLHDRIVSV_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-SECPEP	A375_MHC_IP_R1	1	520.0142211914062	2	519.308741	1036.60293	-0.80439	-0.00041773	0.38648	0.0002007	-0.41791	-0.00021702	519.3088857314294	38.333	0.35895	38.333	38.218	38.577	0					10	6	2	0	0	0	0.55534	1	13037	13037		20.581	1.3239	1	3028000			59144	3067	43163	43496	57655	57655					0.08609138088513646
VLHDRIVSV	9	Unmodified	_VLHDRIVSV_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-SECPEP	A375_MHC_IP_R2	2	519.708251953125	2	519.308741	1036.60293	-1.0869	-0.00056445	0.00016639	8.6406E-08	-1.0868	-0.00056436	519.3087737696662	37.431	0.35833	38.201	37.968	38.327	0.7709					12	6	3	0	0	0	0.59614	1	13724	13724		22.658	13.275	1	4101300			59145	3067	43163	43496	57656	57656					0.08609138088513646
VLHELTFQA	9	Unmodified	_VLHELTFQA_					0	0	0		ENSG00000116266|ENST00000370008|STXBP3;ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1	ENSG00000116266|ENST00000370008|STXBP3;ENSG00000136854|ENST00000373299|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	529.6876220703125	2	529.287474	1056.5604	-0.63386	-0.0003355	0.19363	0.00010249	-0.44023	-0.00023301	529.2876500531534	65.094	0.45543	65.094	64.75	65.206	0					11	8	2	0	0	0	0.47368	1	23568	23568		34.102	8.7031	1	1245900			59146	4828;3392	43164	43497	57657	57657					0.034377429602727716
VLHGLRQFR	9	Unmodified	_VLHGLRQFR_					0	0	0			REV__ENSG00000101353|ENST00000343811|MROH8	REV__ENSG00000101353|ENST00000343811|MROH8	MULTI-MSMS	A375_MHC_IP_R1	1	375.9215087890625	3	375.892842	1124.6567	0.012545	4.7156E-06	0.28194	0.00010598	0.29449	0.0001107	375.89291179354916	26.182	0.55801	26.182	26.017	26.575	0					19	10	2	0	0	0	0.7235	1	7911	7911		4.897	4.897	1	4203900	+		59147	17165	43165	43498	57658	57658					0.09935355310881278
VLHGRRSCPP	10	Unmodified	_VLHGRRSCPP_					0	0	0		ENST00000587730.5_1_19:14520811-14521537:-|nuORF	ENST00000587730.5_1_19:14520811-14521537:-|nuORF	ENST00000587730.5_1_19:14520811-14521537:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	560.7294311523438	2	561.303467	1120.59238	-0.90949	-0.0005105	-0.9466	-0.00053133	-1.8561	-0.0010418	561.3025503986647	71.504	0.50734	72.238	72.111	72.618	0.73421					10	9	2	0	0	0	0.91442	1	27150	27150		16.149	4.6544	1	725040			59148	13749	43166	43499	57659	57659					0.036908321624196105
VLHGRRSCPP	10	Unmodified	_VLHGRRSCPP_					0	0	0		ENST00000587730.5_1_19:14520811-14521537:-|nuORF	ENST00000587730.5_1_19:14520811-14521537:-|nuORF	ENST00000587730.5_1_19:14520811-14521537:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	561.303467	1120.59238	-0.30332	-0.00017025	-1.8064	-0.0010139	-2.1097	-0.0011842	561.8025380301557	72.347	0.20247	72.347	72.22	72.423	0	0.05431	-0.00074041	NaN	16.149	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	540950			59149	13749	43166	43499							0.036908321624196105
VLHLKRYRE	9	Unmodified	_VLHLKRYRE_					0	0	0			REV__ENSG00000159459|ENST00000290650|UBR1	REV__ENSG00000159459|ENST00000290650|UBR1	MULTI-MSMS	A375_MHC_IP_R2	2	607.76025390625	2	607.361839	1212.70913	-0.21746	-0.00013208	-1.0015	-0.00060827	-1.219	-0.00074035	607.3612165750039	145.15	0.58588	145.18	144.84	145.43	0.021408					55	26	3	0	0	0	0.77314	1	56611	56611		0.45834	0	1	682410	+		59150	20123	43167	43500	57660	57660					0.1112789365381559
VLHRKHAD	8	Unmodified	_VLHRKHAD_					0	0	0		ENST00000371752.5_2_20:47865757-47865910:-|nuORF	ENST00000371752.5_2_20:47865757-47865910:-|nuORF	ENST00000371752.5_2_20:47865757-47865910:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	488.6785888671875	2	488.277775	974.540997	-0.38147	-0.00018626	0.44291	0.00021626	0.061442	3.0001E-05	488.2784983084433	143.18	0.25381	143.22	143.14	143.39	0.030731					9	4	4	0	0	0	0.972	1	55986	55986		5.2307	0.47466	1	1680200			59151	11184	43168	43501	57661	57661					0.052708314600295125
VLHTNQYSL	9	Unmodified	_VLHTNQYSL_					0	0	0			REV__nc|ENSG00000139725|Q9HBH0-2|RHOF	REV__nc|ENSG00000139725|Q9HBH0-2|RHOF	MULTI-SECPEP	A375_MHC_IP_R2	2	538.1241455078125	2	537.782556	1073.55056	-0.76448	-0.00041112	-0.57829	-0.00031099	-1.3428	-0.00072212	537.7826519255602	95.725	0.50843	96.475	96.246	96.754	0.75045					20	9	3	0	0	0	0.60012	1	36414	36414		12.532	0	1	1659600	+		59152	19177	43169	43502	57662	57662					0.016725549548937124
VLHWEDREPEY	11	Unmodified	_VLHWEDREPEY_					0	0	0			REV__ENSG00000079999|ENST00000171111|KEAP1	REV__ENSG00000079999|ENST00000171111|KEAP1	MSMS	A375_MHC_IP_R1	1	491.4629821777344	3	491.565008	1471.67319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.55	1	31.55	31.05	32.05	0								0	0	0	0.16332	1	10109	10109		1.4551	0	1		+		59153	16740	43170	43503	57663	57663					-0.04377653104347701
VLHWEDREPEY	11	Unmodified	_VLHWEDREPEY_					0	0	0			REV__ENSG00000079999|ENST00000171111|KEAP1	REV__ENSG00000079999|ENST00000171111|KEAP1	MSMS	A375_MHC_IP_R2	2	491.46282958984375	3	491.565008	1471.67319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.84	1	31.558	31.058	32.058	0.71857								0	0	0	0.1635	1	10867	10867		0.50596	0	1		+		59154	16740	43170	43503	57664	57664					-0.04377653104347701
VLHYQKHL	8	Unmodified	_VLHYQKHL_					0	0	0			REV__ENST00000557725.5_1_14:93172722-93179177:-|nuORF	REV__ENST00000557725.5_1_14:93172722-93179177:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	519.9860229492188	2	519.298176	1036.5818	-0.7173	-0.00037249	-1.2133	-0.00063006	-1.9306	-0.0010025	519.2978321623916	74.409	0.40704	75.147	74.958	75.365	0.73752					11	7	2	0	0	0	0.97144	1	28321	28321		2.3027	0.4585	1	814610	+		59155	17109	43171	43504	57665	57665					0.06497172779654647
VLHYQKHL	8	Unmodified	_VLHYQKHL_					0	0	0			REV__ENST00000557725.5_1_14:93172722-93179177:-|nuORF	REV__ENST00000557725.5_1_14:93172722-93179177:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	519.298176	1036.5818	-0.51417	-0.00026701	-1.9196	-0.00099684	-2.4338	-0.0012639	519.29705669269	75.404	0.35357	75.404	75.16	75.514	0	0.12858	-0.00020706	NaN	2.3027	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	801610	+		59156	17109	43171	43504							0.06497172779654647
VLIDHDVDL	9	Unmodified	_VLIDHDVDL_					0	0	0		nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-6|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1	MULTI-MSMS	A375_MHC_IP_R1	1	520.2368774414062	2	519.776939	1037.53933	-0.39893	-0.00020736	-0.52196	-0.0002713	-0.92089	-0.00047866	519.7769982362089	71.096	0.71532	71.096	70.85	71.565	0					25	13	3	0	0	0	0.077132	2	25801	25801;25841		54.774	26.287	1	3320300			59157	3598	43172	43505	57666;57667	57666					0.022057328607616
VLIDHDVDL	9	Unmodified	_VLIDHDVDL_					0	0	0		nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-6|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1	MULTI-MSMS	A375_MHC_IP_R2	2	519.697021484375	2	519.776939	1037.53933	-0.61328	-0.00031877	-1.1225	-0.00058344	-1.7358	-0.00090221	519.7767720243963	70.349	0.96487	71.084	70.437	71.402	0.73421					25	18	2	0	0	0	0.2002	1	26687	26687		37.974	17.52	1	1955600			59158	3598	43172	43505	57668	57668					0.022057328607616
VLIDLFERF	9	Unmodified	_VLIDLFERF_					0	0	0			REV__ENST00000558383.1_1_15:45393877-45400429:-|nuORF	REV__ENST00000558383.1_1_15:45393877-45400429:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	384.2960205078125	3	384.553492	1150.63865	-0.67097	-0.00025802	0.45203	0.00017383	-0.21894	-8.4194E-05	384.55395317222724	28.61	0.20149	29.308	29.132	29.333	0.69872					5	3	2	0	0	0	0.67539	1	9862	9862		16.149	13.866	1	5443700	+		59159	19044	43173	43506	57669	57669					0.06935175545504535
VLIDYQRNV	9	Unmodified	_VLIDYQRNV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	A375_MHC_IP_R1	1	560.7113037109375	2	560.31148	1118.60841	-0.61817	-0.00034637	-1.5321	-0.00085844	-2.1502	-0.0012048	560.3099897106861	52.717	1.1169	52.717	52.438	53.555	0					26	15	3	0	0	0	0.074405	1	19091	19091		79.596	31.848	1	3343200			59160	1768	43174	43507	57670	57670					0.05384816880314247
VLIDYQRNV	9	Unmodified	_VLIDYQRNV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	A375_MHC_IP_R1	1	560.7113037109375	2	560.31148	1118.60841	-0.3878	-0.00021729	0.34531	0.00019348	-0.042496	-2.3811E-05	560.3116933356265	53.682	1.2664	53.682	53.301	54.567	0					73	24	5	0	0	0	0.074405	1	19091	19091		79.596	31.848	1	195430000			59161	1768	43174	43507	57671	57671					0.05384816880314247
VLIDYQRNV	9	Unmodified	_VLIDYQRNV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	A375_MHC_IP_R2	2	560.5986938476562	2	560.31148	1118.60841	-1.1834	-0.00066307	0.23942	0.00013415	-0.94397	-0.00052892	560.3116286821337	52.957	1.2734	53.708	53.284	54.557	0.75105					74	24	5	0	0	0	0.011236	1	19916	19916		129.77	54.843	1	142380000			59162	1768	43174	43507	57672	57672					0.05384816880314247
VLIEELYIL	9	Unmodified	_VLIEELYIL_					0	0	0			REV__nc|ENSG00000060069|Q9Y5B0-4|CTDP1	REV__nc|ENSG00000060069|Q9Y5B0-4|CTDP1	MULTI-SECPEP	A375_MHC_IP_R1	1	553.1640625	2	552.831183	1103.64781	-0.45925	-0.00025389	-0.27709	-0.00015319	-0.73634	-0.00040707	553.3334997464544	56.016	1.7294	56.016	55.584	57.313	0					44	33	2	0	0	0	0.52144	1	20431	20431		30.225	0	1	3088500	+		59163	16444	43175	43508	57673	57673					0.10013524111172956
VLIEGSINSV	10	Unmodified	_VLIEGSINSV_					0	0	0		ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4;nc|ENSG00000241553|P59998-2|ARPC4	ENSG00000241553|ENST00000397261|ARPC4	ENSG00000241553|ENST00000397261|ARPC4	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1931762695312	2	515.792589	1029.57063	-0.61204	-0.00031569	1.1066	0.00057076	0.49454	0.00025508	515.7928922661245	83.676	0.80883	83.676	83.483	84.292	0					21	15	2	0	0	0	0.02404	1	30611	30611		157.8	75.266	1	3247600			59164	9784	43176	43509	57674	57674					0.057023058948516336
VLIEGSINSV	10	Unmodified	_VLIEGSINSV_					0	0	0		ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4;nc|ENSG00000241553|P59998-2|ARPC4	ENSG00000241553|ENST00000397261|ARPC4	ENSG00000241553|ENST00000397261|ARPC4	MULTI-MSMS	A375_MHC_IP_R2	2	516.1917114257812	2	515.792589	1029.57063	-0.75887	-0.00039142	-0.24788	-0.00012785	-1.0068	-0.00051928	515.7921168853285	82.899	0.75578	83.638	83.242	83.998	0.73962					19	14	2	0	0	0	0.01165	1	31497	31497		114.65	58.472	1	3205700			59165	9784	43176	43509	57675	57675					0.057023058948516336
VLIEILQKA	9	Unmodified	_VLIEILQKA_					0	0	0		ENSG00000196911|ENST00000368564|KPNA5;KPNA5|p.P384L|1|0.18|ENSG00000196911|chr6:116726520-116726520|C/T|missense_variant;ENSG00000025800|ENST00000373625|KPNA6	ENSG00000196911|ENST00000368564|KPNA5;ENSG00000025800|ENST00000373625|KPNA6	ENSG00000025800|ENST00000373625|KPNA6	MULTI-SECPEP	A375_MHC_IP_R2	2	514.2314453125	2	513.831517	1025.64848	-0.6817	-0.00035028	-0.15459	-7.9435E-05	-0.8363	-0.00042972	513.8314671165987	88.979	0.45238	89.711	89.533	89.985	0.7318					13	8	2	0	0	0	0.4465	1	33918	33918		38.176	1.6694	1	935120			59166	9092;1092	43177	43510	57676	57676					0.13668363550914364
VLIETLVTL	9	Unmodified	_VLIETLVTL_					0	0	0		ENST00000480653.5_1_20:32878355-32891076:-|nuORF;nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY;ENST00000606061.1_1_20:32881868-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	501.2174072265625	2	500.818076	999.621598	-0.60206	-0.00030152	-0.64946	-0.00032526	-1.2515	-0.00062678	500.81768342277917	130.79	1.1647	130.79	130.62	131.78	0					47	22	3	0	0	0	0.011042	1	50372	50372		131.3	21.668	1	264670000			59167	2296	43178	43511	57677	57677					0.12177254939717841
VLIETLVTL	9	Unmodified	_VLIETLVTL_					0	0	0		ENST00000480653.5_1_20:32878355-32891076:-|nuORF;nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY;ENST00000606061.1_1_20:32881868-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	501.21795654296875	2	500.818076	999.621598	-0.59553	-0.00029825	-0.15169	-7.5969E-05	-0.74722	-0.00037422	500.81793915455086	130.56	0.91472	130.77	130.6	131.52	0.2142					40	17	4	0	0	0	0.0070665	1	51341	51341		131.3	13.699	1	74338000			59168	2296	43178	43511	57678	57678					0.12177254939717841
VLIETLVTL	9	Unmodified	_VLIETLVTL_					0	0	0		ENST00000480653.5_1_20:32878355-32891076:-|nuORF;nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY;ENST00000606061.1_1_20:32881868-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1000.9937744140625	1	1000.62887	999.621598	0.0042729	4.2756E-06	0.13803	0.00013811	0.1423	0.00014239	1000.6288281441853	130.57	0.30469	130.78	130.65	130.96	0.2142					10	5	3	0	0	0	0.061132	1	51355	51355		57.471	15.377	1	54106000			59169	2296	43178	43511	57679	57679					0.12177254939717841
VLIETLVTL	9	Unmodified	_VLIETLVTL_					0	0	0		ENST00000480653.5_1_20:32878355-32891076:-|nuORF;nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY;ENST00000606061.1_1_20:32881868-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	1000.62887	999.621598	-0.018609	-1.8621E-05	-0.85238	-0.00085291	-0.87098	-0.00087153	1000.6282362353737	130.79	0.50864	130.79	130.51	131.02	0	0.0048566	-0.00049031	NaN	57.471	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59484000			59170	2296	43178	43511							0.12177254939717841
VLIEVNPQT	9	Unmodified	_VLIEVNPQT_					0	0	0		ENSG00000126749|ENST00000599672|EMG1	ENSG00000126749|ENST00000599672|EMG1	ENSG00000126749|ENST00000599672|EMG1	MULTI-SECPEP	A375_MHC_IP_R2	2	507.18658447265625	2	506.787307	1011.56006	-0.9808	-0.00049706	-0.063219	-3.2039E-05	-1.044	-0.0005291	506.7874387210125	71.367	0.65888	72.101	71.806	72.465	0.73421					24	12	3	0	0	0	0.036758	1	27058	27058		61.602	43.229	1	3740400			59171	4056	43179	43512	57680	57680					0.05474323240423473
VLIEVNPQT	9	Unmodified	_VLIEVNPQT_					0	0	0		ENSG00000126749|ENST00000599672|EMG1	ENSG00000126749|ENST00000599672|EMG1	ENSG00000126749|ENST00000599672|EMG1	MULTI-MATCH	A375_MHC_IP_R1	1		2	506.787307	1011.56006	-0.1791	-9.0766E-05	-0.40945	-0.00020751	-0.58855	-0.00029827	506.78733113136616	72.1	0.60735	72.1	71.815	72.423	0	-0.00041606	-0.00020418	NaN	61.602	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5337600			59172	4056	43179	43512							0.05474323240423473
VLIFGHLNEG	10	Unmodified	_VLIFGHLNEG_					0	0	0			REV__IDO2|p.S163N|1|0.25|ENSG00000188676|chr8:39987909-39987909|G/A|missense_variant	REV__IDO2|p.S163N|1|0.25|ENSG00000188676|chr8:39987909-39987909|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	366.9256896972656	3	366.869591	1097.58694	-0.25004	-9.1731E-05	0.26339	9.6631E-05	0.013354	4.8991E-06	366.86973439978823	26.508	0.55853	27.168	26.907	27.466	0.65992					16	10	2	0	0	0	0.70146	1	9031	9031		6.6304	0	1	3641800	+		59173	26775	43180	43513	57681	57681					0.04205431851596586
VLIGEFLEKV	10	Unmodified	_VLIGEFLEKV_					0	0	0		ENSG00000101654|ENST00000383314|RNMT;nc|ENSG00000101654|O43148-2|RNMT;RNMT|p.E339Vfs*6|1|0.29|ENSG00000101654|chr18:13742528-13742529|-/TA|frameshift_variant	ENSG00000101654|ENST00000383314|RNMT	ENSG00000101654|ENST00000383314|RNMT	MULTI-MSMS	A375_MHC_IP_R1	1	574.241943359375	2	573.842082	1145.66961	0.11197	6.4251E-05	-0.14391	-8.2579E-05	-0.031939	-1.8328E-05	573.8419154958746	116.14	0.50877	116.14	115.83	116.34	0					19	9	3	0	0	0	0.049466	1	42590	42590		85.764	45.525	1	3073900			59174	2317	43181	43514	57682	57682					0.10260328859726542
VLIGEFLEKV	10	Unmodified	_VLIGEFLEKV_					0	0	0		ENSG00000101654|ENST00000383314|RNMT;nc|ENSG00000101654|O43148-2|RNMT;RNMT|p.E339Vfs*6|1|0.29|ENSG00000101654|chr18:13742528-13742529|-/TA|frameshift_variant	ENSG00000101654|ENST00000383314|RNMT	ENSG00000101654|ENST00000383314|RNMT	MULTI-SECPEP	A375_MHC_IP_R2	2	574.241455078125	2	573.842082	1145.66961	-0.04187	-2.4027E-05	-0.15332	-8.7983E-05	-0.19519	-0.00011201	573.8420371867219	115.09	0.46042	115.78	115.52	115.98	0.68999					18	8	3	0	0	0	0.31583	1	43418	43418		61.09	23.116	1	3264100			59175	2317	43181	43514	57683	57683					0.10260328859726542
VLIHTAGAPI	10	Unmodified	_VLIHTAGAPI_					0	0	0			REV__ENSG00000158859|ENST00000367996|ADAMTS4	REV__ENSG00000158859|ENST00000367996|ADAMTS4	MULTI-SECPEP	A375_MHC_IP_R1	1	496.7004089355469	2	496.300384	990.586216	-0.46804	-0.00023229	0.45953	0.00022806	-0.0085078	-4.2224E-06	496.30065136157526	95.433	0.55604	95.433	95.16	95.716	0					19	10	2	0	0	0	0.65982	1	35080	35080		34.102	5.6156	1	3027000	+		59176	20092	43182	43515	57684	57684					0.0905463720255284
VLIHTAGAPI	10	Unmodified	_VLIHTAGAPI_					0	0	0			REV__ENSG00000158859|ENST00000367996|ADAMTS4	REV__ENSG00000158859|ENST00000367996|ADAMTS4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	496.300384	990.586216	-0.23962	-0.00011893	0.43539	0.00021608	0.19576	9.7156E-05	496.30058795854205	94.492	0.45712	95.237	94.969	95.426	0.74473	-0.098147	-1.0967E-05	NaN	34.102	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3162100	+		59177	20092	43182	43515							0.0905463720255284
VLIKIALKRIP	11	Unmodified	_VLIKIALKRIP_					0	0	0			REV__ENST00000480032.4_1_2:166152333-166226884:+|nuORF;REV__nc|ENSG00000136531|Q99250-2|SCN2A	REV__nc|ENSG00000136531|Q99250-2|SCN2A	MSMS	A375_MHC_IP_R1	1	632.4700317382812	2	632.447383	1262.88021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.327	1	77.327	76.827	77.827	0								0	0	0	0.16353	1	28208	28208		0.35063	0	1		+		59178	25241;18945	43183	43516	57685	57685					0.2592883097245249
VLILHEPLV	9	Unmodified	_VLILHEPLV_					0	0	0			REV__ENSG00000101639|ENST00000506447|CEP192	REV__ENSG00000101639|ENST00000506447|CEP192	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1110229492188	2	516.826235	1031.63792	-0.62692	-0.00032401	-0.0071595	-3.7002E-06	-0.63408	-0.00032771	516.8260862389433	65.143	0.30372	65.143	65.005	65.309	0					8	5	2	0	0	0	0.73662	1	23620	23620		2.3027	0	1	878330	+		59179	17180	43184	43517	57686	57686					0.12336380896431365
VLILHGGVSDI	11	Unmodified	_VLILHGGVSDI_					0	0	0		nc|ENSG00000156194|O14830-2|PPEF2;ENSG00000156194|ENST00000286719|PPEF2	nc|ENSG00000156194|O14830-2|PPEF2	nc|ENSG00000156194|O14830-2|PPEF2	MULTI-SECPEP	A375_MHC_IP_R1	1	561.6940307617188	2	561.829506	1121.64446	-0.43364	-0.00024363	-0.25019	-0.00014057	-0.68383	-0.0003842	561.8292487701295	53.446	0.50858	53.446	53.301	53.809	0					16	9	2	0	0	0	0.98416	1	19132	19132		10.074	0	1	1310200			59180	6179	43185	43518	57687	57687					0.08850274057181196
VLILILCLKV	10	Unmodified	_VLILILCLKV_					0	0	0		ENST00000251527.9_1_7:158524237-158524429:-|nuORF	ENST00000251527.9_1_7:158524237-158524429:-|nuORF	ENST00000251527.9_1_7:158524237-158524429:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1127.1641845703125	1	1126.7632	1125.75592	0.3157	0.00035572	-0.59627	-0.00067186	-0.28057	-0.00031614	1126.7623324570611	146.63	0.33644	146.65	146.56	146.9	0.019913					113	32	6	0	0	0	0.72747	3	57072	57072;57092;57094		0	0	1	159130000			59181	10204	43186	43519	57688;57689;57690	57688					0.19807617160745394
VLILLLPLLF	10	Unmodified	_VLILLLPLLF_					0	0	0			REV__ENSG00000156097|ENST00000527748|GPR61	REV__ENSG00000156097|ENST00000527748|GPR61	MSMS	A375_MHC_IP_R2	2	577.6946411132812	2	577.401579	1152.7886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.079	1	65.817	65.317	66.317	0.73811								0	0	0	0.15628	1	24675	24675		0.45834	0	1		+		59182	19961	43187	43520	57691	57691					0.21832147555278425
VLINAGYAF	9	Unmodified	_VLINAGYAF_					0	0	0			REV__ENSG00000121207|ENST00000336356|LRAT	REV__ENSG00000121207|ENST00000336356|LRAT	MULTI-SECPEP	A375_MHC_IP_R2	2	484.6650085449219	2	484.26601	966.517468	-0.94708	-0.00045864	-0.18715	-9.063E-05	-1.1342	-0.00054927	484.26579816601185	59.823	0.45526	60.57	60.45	60.906	0.74714					14	8	3	0	0	0	0.62767	1	22667	22667		16.942	2.3606	1	1573500	+		59183	18150	43188	43521	57692	57692					0.03286972902844809
VLIPKLPQL	9	Unmodified	_VLIPKLPQL_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-SECPEP	A375_MHC_IP_R1	1	511.24420166015625	2	510.844428	1019.6743	-0.20448	-0.00010446	0.10018	5.1178E-05	-0.1043	-5.3279E-05	510.84442247792657	107.89	1.3219	107.89	107.44	108.76	0					72	25	4	0	0	0	0.030624	1	39492	39492		88.904	28.514	1	38503000			59184	7676	43189	43522	57693	57693					0.1652525779318239
VLIPKLPQL	9	Unmodified	_VLIPKLPQL_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-SECPEP	A375_MHC_IP_R2	2	510.6732482910156	2	510.844428	1019.6743	-0.82438	-0.00042113	-0.084711	-4.3274E-05	-0.90909	-0.0004644	510.8443021286741	106.96	1.3727	107.72	107.24	108.61	0.75977					71	26	4	0	0	0	0.021422	1	40331	40331		96.285	35.895	1	44437000			59185	7676	43189	43522	57694	57694					0.1652525779318239
VLIRKIDPAL	10	Unmodified	_VLIRKIDPAL_					0	0	0		ENST00000602508.1_1_X:71997439-71997757:+|nuORF	ENST00000602508.1_1_X:71997439-71997757:+|nuORF	ENST00000602508.1_1_X:71997439-71997757:+|nuORF	MSMS	A375_MHC_IP_R1	1	569.412353515625	2	569.371341	1136.72813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.4	1	111.4	110.9	111.9	0								0	0	0	0.15435	1	40838	40838		6.7232	0	1				59186	13885	43190	43523	57695	57695					0.1652343022487912
VLIRRCTEL	9	Unmodified	_VLIRRCTEL_					0	0	0		nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5;nc|ENSG00000012779|P09917-5|ALOX5;nc|ENSG00000012779|P09917-4|ALOX5;ENST00000483623.2_1_10:45920415-45923886:+|nuORF	nc|ENSG00000012779|P09917-2|ALOX5	nc|ENSG00000012779|P09917-2|ALOX5	MULTI-SECPEP	A375_MHC_IP_R2	2	551.163818359375	2	551.823701	1101.63285	-0.62032	-0.00034231	2.0432	0.0011275	1.4229	0.00078518	552.3265284306368	86.075	0.66373	86.808	86.642	87.306	0.73301					14	12	2	0	0	0	0.74651	1	32902	32902		8.5933	4.264	1	899270			59187	1012	43191	43524	57696	57696					0.08609753762198125
VLISGVVHEI	10	Unmodified	_VLISGVVHEI_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-SECPEP	A375_MHC_IP_R1	1	533.189453125	2	533.318774	1064.623	-0.68787	-0.00036685	0.0076346	4.0717E-06	-0.68024	-0.00036278	533.3189396925247	81.278	0.35429	81.278	81.049	81.404	0					10	6	2	0	0	0	0.64716	1	29680	29680		36.127	36.127	1	1782600			59188	1008	43192	43525	57697	57697					0.09326889028466212
VLISSVAILI	10	Unmodified	_VLISSVAILI_					0	0	0		nc|ENSG00000196811|P07510-2|CHRNG;ENSG00000196811|ENST00000651502|CHRNG	nc|ENSG00000196811|P07510-2|CHRNG	nc|ENSG00000196811|P07510-2|CHRNG	MULTI-SECPEP	A375_MHC_IP_R1	1	514.728759765625	2	514.341718	1026.66888	-0.49338	-0.00025377	-0.82013	-0.00042183	-1.3135	-0.00067559	514.3413058840101	98.839	0.20331	98.839	98.711	98.914	0					5	3	2	0	0	0	0.57563	1	36296	36296		32.305	0	1	448520			59189	9085	43193	43526	57698	57698					0.15661534210721584
VLIVFYSGQPR	11	Unmodified	_VLIVFYSGQPR_					0	0	0			REV__ENST00000547181.5_1_12:48482530-48482686:-|nuORF	REV__ENST00000547181.5_1_12:48482530-48482686:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	427.3116760253906	3	426.911679	1277.71321	-0.085728	-3.6598E-05	0.025626	1.094E-05	-0.060102	-2.5658E-05	426.91173778051126	91.072	0.55584	91.806	91.566	92.122	0.7345					22	10	3	0	0	0	0.68072	1	34655	34655		17.049	2.0914	1	3648800	+		59190	26006	43194	43527	57699	57699					0.08545938356883198
VLIVFYSGQPR	11	Unmodified	_VLIVFYSGQPR_					0	0	0			REV__ENST00000547181.5_1_12:48482530-48482686:-|nuORF	REV__ENST00000547181.5_1_12:48482530-48482686:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	426.911679	1277.71321	-0.085728	-3.6598E-05	0.025626	1.094E-05	-0.060102	-2.5658E-05	426.91173778051126	91.072	0.55584	91.806	91.566	92.122	0.7345	-0.03573	-0.00020143	NaN	17.049	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3648800	+		59191	26006	43194	43527							0.08545938356883198
VLIVPMVATL	10	Unmodified	_VLIVPMVATL_					0	0	0		ENSG00000277161|ENST00000614443|PIGW	ENSG00000277161|ENST00000614443|PIGW	ENSG00000277161|ENST00000614443|PIGW	MSMS	A375_MHC_IP_R1	1	528.394775390625	2	528.330296	1054.64604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.54	1	134.54	134.04	135.04	0								0	0	0	0.15435	1	51883	51883		6.7232	0	1				59192	10025	43195	43528	57700	57700					0.12090191821584995
VLIWNIRRNKN	11	Unmodified	_VLIWNIRRNKN_					0	0	0		ENSG00000133131|ENST00000355610|MORC4;nc|ENSG00000133131|Q8TE76-3|MORC4	ENSG00000133131|ENST00000355610|MORC4	ENSG00000133131|ENST00000355610|MORC4	MSMS	A375_MHC_IP_R1	1	713.7233276367188	2	713.425502	1424.83645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.21	1	112.21	111.71	112.71	0								0	0	0	0.16297	1	41130	41130		3.2813	0	1				59193	4491	43196	43529	57701	57701					0.14102614528042068
VLIWVISWL	9	Unmodified	_VLIWVISWL_					0	0	0			REV__nc|ENSG00000163491|Q6ZWH5-4|NEK10	REV__nc|ENSG00000163491|Q6ZWH5-4|NEK10	MULTI-MSMS	A375_MHC_IP_R1	1	377.29986572265625	3	376.898711	1127.6743	0.14773	5.568E-05	1.6016	0.00060363	1.7493	0.00065931	376.8997627435655	19.293	0.29937	19.293	19.221	19.521	0					14	7	4	0	0	0	0.63811	1	4755	4755		8.1555	0	1	23549000	+		59194	20368	43197	43530	57702	57702					0.11557257793197095
VLIYSLGSTI	10	Unmodified	_VLIYSLGSTI_					0	0	0			REV__NME8|p.M217I|1|0.58|ENSG00000086288|chr7:37867731-37867731|G/A|missense_variant	REV__NME8|p.M217I|1|0.58|ENSG00000086288|chr7:37867731-37867731|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	533.6713256835938	2	533.313158	1064.61176	-0.68078	-0.00036307	0.090078	4.804E-05	-0.5907	-0.00031503	533.3132980297905	61.438	0.25587	61.438	61.227	61.483	0					7	4	2	0	0	0	0.76414	1	22140	22140		14.838	0	1	2201000	+		59195	27617	43198	43531	57703	57703					0.0820406693435416
VLIYSLGSTI	10	Unmodified	_VLIYSLGSTI_					0	0	0			REV__NME8|p.M217I|1|0.58|ENSG00000086288|chr7:37867731-37867731|G/A|missense_variant	REV__NME8|p.M217I|1|0.58|ENSG00000086288|chr7:37867731-37867731|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	533.6710205078125	2	533.313158	1064.61176	-1.029	-0.00054879	-0.29896	-0.00015944	-1.328	-0.00070823	533.312977852109	60.691	0.30399	61.436	61.16	61.464	0.74504					12	5	3	0	0	0	0.69172	1	22951	22951		25.399	4.9457	1	2987700	+		59196	27617	43198	43531	57704	57704					0.0820406693435416
VLKAKKKKLKV	11	Unmodified	_VLKAKKKKLKV_					0	0	0		ENST00000539429.1_1_12:124144026-124144779:+|nuORF;nc|ENSG00000111358|Q13889-2|GTF2H3;ENSG00000111358|ENST00000543341|GTF2H3	ENST00000539429.1_1_12:124144026-124144779:+|nuORF	ENST00000539429.1_1_12:124144026-124144779:+|nuORF	MSMS	A375_MHC_IP_R1	1	641.8936767578125	2	641.968483	1281.92241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.58	1	104.58	104.08	105.08	0								0	0	0	0.1636	1	38401	38401		0	0	1				59197	2987	43199	43532	57705	57705					0.2927280638079992
VLKATKGEIY	10	Unmodified	_VLKATKGEIY_					0	0	0		tr|U7STC6|U7STC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01437PE=3SV=1	tr|U7STC6|U7STC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01437PE=3SV=1	tr|U7STC6|U7STC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01437PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	560.7431640625	2	561.331882	1120.64921	-0.41104	-0.00023073	3.0301	0.0017009	2.6191	0.0014702	561.8344287087784	142.15	0.25342	142.18	142.08	142.33	0.030731					6	4	2	0	0	0	0.94421	1	55578	55578		3.9444	0	1	445210			59198	29680	43200	43533	57706	57706					0.09371158199951424
VLKEIVERV	9	Unmodified	_VLKEIVERV_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-SECPEP	A375_MHC_IP_R1	1	362.62896728515625	3	362.229008	1083.66519	0.25504	9.2383E-05	-0.31514	-0.00011415	-0.060098	-2.1769E-05	362.2288687934691	50.083	0.71708	50.083	49.793	50.51	0					23	13	3	0	0	0	0.42978	1	17727	17727		42.835	17.954	1	3201600			59199	4678	43201	43534	57707	57707					0.12670864436836382
VLKEIVERV	9	Unmodified	_VLKEIVERV_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-SECPEP	A375_MHC_IP_R1	1	543.2393188476562	2	542.839874	1083.66519	-0.49255	-0.00026738	-0.13609	-7.3874E-05	-0.62864	-0.00034125	542.8397532961033	50.047	0.51188	50.047	49.793	50.305	0					20	9	3	0	0	0	0.58315	1	17731	17731		34.222	13.807	1	4311800			59200	4678	43201	43534	57708	57708					0.12670864436836382
VLKEIVERV	9	Unmodified	_VLKEIVERV_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-SECPEP	A375_MHC_IP_R2	2	362.6289367675781	3	362.229008	1083.66519	-0.3511	-0.00012718	0.0017788	6.4434E-07	-0.34933	-0.00012654	362.2290139074392	49.172	0.60737	49.929	49.69	50.297	0.75737					23	11	3	0	0	0	0.30942	1	18451	18451		53.47	28.588	1	5150400			59201	4678	43201	43534	57709	57709					0.12670864436836382
VLKEIVERV	9	Unmodified	_VLKEIVERV_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-SECPEP	A375_MHC_IP_R2	2	543.2398071289062	2	542.839874	1083.66519	-1.0275	-0.00055779	0.19556	0.00010616	-0.83198	-0.00045163	542.839935993497	49.162	0.55695	49.919	49.69	50.247	0.75737					24	10	3	0	0	0	0.68641	1	18460	18460		30.703	7.9672	1	5791600			59202	4678	43201	43534	57710	57710					0.12670864436836382
VLKERWFWRVR	11	Unmodified	_VLKERWFWRVR_					0	0	0		MMP14|p.F336L|1|0.11|ENSG00000157227|chr14:22843865-22843865|T/C|missense_variant	MMP14|p.F336L|1|0.11|ENSG00000157227|chr14:22843865-22843865|T/C|missense_variant	MMP14|p.F336L|1|0.11|ENSG00000157227|chr14:22843865-22843865|T/C|missense_variant	MSMS	A375_MHC_IP_R2	2	787.9227294921875	2	787.956969	1573.89939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.27	1	128.51	128.01	129.01	0.23946								0	0	0	0.16337	1	50355	50355		1.1933	0.12188	1				59203	14391	43202	43535	57711	57711					0.1353918031604735
VLKEYLDNV	9	Unmodified	_VLKEYLDNV_					0	0	0		ENSG00000117528|ENST00000370214|ABCD3;nc|ENSG00000117528|P28288-2|ABCD3	ENSG00000117528|ENST00000370214|ABCD3	ENSG00000117528|ENST00000370214|ABCD3	MULTI-SECPEP	A375_MHC_IP_R2	2	547.2000122070312	2	546.800414	1091.58628	-1.104	-0.00060368	-1.3323	-0.00072851	-2.4363	-0.0013322	546.7999210383065	60.317	0.50983	61.062	60.701	61.211	0.74503					15	9	2	0	0	0	0.076731	1	22872	22872		71.708	31.751	1	3029600			59204	3491	43203	43536	57712	57712					0.04414592411899321
VLKEYLDNV	9	Unmodified	_VLKEYLDNV_					0	0	0		ENSG00000117528|ENST00000370214|ABCD3;nc|ENSG00000117528|P28288-2|ABCD3	ENSG00000117528|ENST00000370214|ABCD3	ENSG00000117528|ENST00000370214|ABCD3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	546.800414	1091.58628	-0.57435	-0.00031406	-1.355	-0.00074093	-1.9294	-0.001055	546.7998282749252	61.081	0.55957	61.081	60.719	61.279	0	0.009535	-4.3445E-06	NaN	71.708	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2691500			59205	3491	43203	43536							0.04414592411899321
VLKFFTKLF	9	Unmodified	_VLKFFTKLF_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MSMS	A375_MHC_IP_R2	2	381.6120910644531	3	381.570594	1141.68995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.179	1	31.897	31.397	32.397	0.71857								0	0	0	0.15486	1	11013	11013		7.609	0	1				59206	4093	43204	43537	57713	57713					0.12477544310195299
VLKGLETRKE	10	Unmodified	_VLKGLETRKE_					0	0	0			REV__ENSG00000005100|ENST00000225296|DHX33	REV__ENSG00000005100|ENST00000225296|DHX33	MULTI-MSMS	A375_MHC_IP_R1	1	391.6277160644531	3	391.571434	1171.69247	0.13779	5.3955E-05	1.1623	0.00045514	1.3001	0.00050909	391.57184442075857	20.005	0.60891	20.005	19.674	20.283	0					19	11	2	0	0	0	0.65751	1	4955	4955		16.566	2.3477	1	2382100	+		59207	16111	43205	43538	57714	57714					0.11349347977215984
VLKGNEAKP	9	Unmodified	_VLKGNEAKP_					0	0	0			REV__ENST00000438477.2_1_1:120039232-120039448:-|nuORF	REV__ENST00000438477.2_1_1:120039232-120039448:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	478.6366882324219	2	478.282192	954.549831	-0.31607	-0.00015117	-0.28497	-0.0001363	-0.60104	-0.00028747	478.2820872614465	42.584	0.35316	42.584	42.336	42.689	0					10	6	2	0	0	0	0.35487	1	14744	14744		43.858	7.3521	1	1173500	+		59208	24784	43206	43539	57715	57715					0.0707376030584328
VLKGRLPR	8	Unmodified	_VLKGRLPR_					0	0	0			REV__ENST00000341011.11_1_17:41448764-41458699:-|nuORF	REV__ENST00000341011.11_1_17:41448764-41458699:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	939.0254516601562	1	938.625796	937.618519	-0.035623	-3.3437E-05	-0.089611	-8.4111E-05	-0.12523	-0.00011755	938.6254348051037	147.88	0.22351	147.89	147.81	148.04	0.018707					25	10	3	0	0	0	0.972	1	57461	57461		0	0	1	300410	+		59209	23727	43207	43540	57716	57716					0.14721469396204157
VLKKHDRIVGL	11	Unmodified	_VLKKHDRIVGL_					0	0	0			REV__ENSG00000013503|ENST00000228347|POLR3B	REV__ENSG00000013503|ENST00000228347|POLR3B	MSMS	A375_MHC_IP_R2	2	639.5091552734375	2	639.406247	1276.79794	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.936	1	85.672	85.172	86.172	0.73601								0	0	0	0.16249	1	32289	32289		5.7319	2.1354	1		+		59210	16235	43208	43541	57717	57717					0.17061308893494243
VLKKKKKKKK	10	Unmodified	_VLKKKKKKKK_					0	0	0		ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	A375_MHC_IP_R1	1	419.2955322265625	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.389	1	27.389	26.889	27.889	0								0	0	0	0.1562	1	8301	8301		0.69767	0	1				59211	12937	43209	43542	57718	57718					0.3054822610067731
VLKKKKKKKK	10	Unmodified	_VLKKKKKKKK_					0	0	0		ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	A375_MHC_IP_R1	1	419.6271057128906	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.23	1	143.23	142.73	143.73	0								0	0	0	0.15637	1	54951	54951		0.15932	0	1				59212	12937	43209	43542	57719	57719					0.3054822610067731
VLKKKLKIAL	10	Unmodified	_VLKKKLKIAL_					0	0	0		ENST00000374791.7_1_11:132205045-132205564:+|nuORF	ENST00000374791.7_1_11:132205045-132205564:+|nuORF	ENST00000374791.7_1_11:132205045-132205564:+|nuORF	MSMS	A375_MHC_IP_R2	2	577.4257202148438	2	577.423377	1152.8322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.046	1	75.783	75.283	76.283	0.73752								0	0	0	0.15642	1	28485	28485		0	0	1				59213	11258	43210	43543	57720	57720					0.26189757052407003
VLKKKLLSHLI	11	Unmodified	_VLKKKLLSHLI_					0	0	0			REV__NLRP13|p.E352K|1|0.21|ENSG00000173572|chr19:55912763-55912763|C/T|missense_variant	REV__NLRP13|p.E352K|1|0.21|ENSG00000173572|chr19:55912763-55912763|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	431.2880554199219	3	431.298986	1290.87513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.13	1	144.15	143.65	144.65	0.024414								0	0	0	0.1636	1	56308	56308		0	0	1		+		59214	27616	43211	43544	57721	57721					0.24132527109850344
VLKLLLLAL	9	Unmodified	_VLKLLLLAL_					0	0	0			REV__nc|ENSG00000133731|P29218-2|IMPA1	REV__nc|ENSG00000133731|P29218-2|IMPA1	MSMS	A375_MHC_IP_R1	1	498.3789978027344	2	498.364996	994.715439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.4	1	147.4	146.9	147.9	0								0	0	0	0.15486	1	56329	56329		0	0	1		+		59215	27229	43212	43545	57722	57722					0.21787018832628746
VLKLLLLAL	9	Unmodified	_VLKLLLLAL_					0	0	0			REV__nc|ENSG00000133731|P29218-2|IMPA1	REV__nc|ENSG00000133731|P29218-2|IMPA1	MSMS	A375_MHC_IP_R1	1	498.37933349609375	2	498.364996	994.715439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.94	1	147.94	147.44	148.44	0								0	0	0	0.15486	1	56508	56508		0	0	1		+		59216	27229	43212	43545	57723	57723					0.21787018832628746
VLKLLLLAL	9	Unmodified	_VLKLLLLAL_					0	0	0			REV__nc|ENSG00000133731|P29218-2|IMPA1	REV__nc|ENSG00000133731|P29218-2|IMPA1	MSMS	A375_MHC_IP_R1	1	498.37890625	2	498.364996	994.715439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.53	1	148.53	148.03	149.03	0								0	0	0	0.15486	1	56718	56718		0	0	1		+		59217	27229	43212	43545	57724	57724					0.21787018832628746
VLKLLLLAL	9	Unmodified	_VLKLLLLAL_					0	0	0			REV__nc|ENSG00000133731|P29218-2|IMPA1	REV__nc|ENSG00000133731|P29218-2|IMPA1	MSMS	A375_MHC_IP_R2	2	498.3790283203125	2	498.364996	994.715439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.28	1	149.29	148.79	149.79	0.01825								0	0	0	0.15486	1	57942	57942		0	0	1		+		59218	27229	43212	43545	57725	57725					0.21787018832628746
VLKLVRMLCFT	11	Unmodified	_VLKLVRMLCFT_					0	0	0			REV__CACNA1G|p.R837C|1|0.47|ENSG00000006283|chr17:50591490-50591490|C/T|missense_variant	REV__CACNA1G|p.R837C|1|0.47|ENSG00000006283|chr17:50591490-50591490|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	441.9939880371094	3	441.594416	1321.76142	-0.26418	-0.00011666	-0.52726	-0.00023284	-0.79144	-0.00034949	441.5941309224124	39.567	0.45402	39.567	39.34	39.794	0					12	8	2	0	0	0	0.7328	1	13563	13563		6.2344	2.1177	1	8438900	+		59219	15551	43213	43546	57726	57726					0.11340972680932282
VLKLVRMLCFT	11	Unmodified	_VLKLVRMLCFT_					0	0	0			REV__CACNA1G|p.R837C|1|0.47|ENSG00000006283|chr17:50591490-50591490|C/T|missense_variant	REV__CACNA1G|p.R837C|1|0.47|ENSG00000006283|chr17:50591490-50591490|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	441.9937744140625	3	441.594416	1321.76142	-0.66083	-0.00029182	-0.70351	-0.00031067	-1.3643	-0.00060249	441.5940612471194	38.659	0.45807	39.433	39.25	39.708	0.77451					19	8	3	0	0	0	0.7353	1	14272	14272		3.8459	1.2147	1	4646700	+		59220	15551	43213	43546	57727	57727					0.11340972680932282
VLKLVRMLCFT	11	Unmodified	_VLKLVRMLCFT_					0	0	0			REV__CACNA1G|p.R837C|1|0.47|ENSG00000006283|chr17:50591490-50591490|C/T|missense_variant	REV__CACNA1G|p.R837C|1|0.47|ENSG00000006283|chr17:50591490-50591490|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	442.1393737792969	3	441.594416	1321.76142	-0.66083	-0.00029182	-0.70351	-0.00031067	-1.3643	-0.00060249	441.5940612471194	38.659	0.45807	39.433	39.25	39.708	0.77451					19	8	3	0	0	0	0.99778	1	14292	14292		3.8459	3.8459	1	4646700	+		59221	15551	43213	43546	57728	57728					0.11340972680932282
VLKRVVKH	8	Unmodified	_VLKRVVKH_					0	0	0			REV__ENST00000488706.1_1_10:71007290-71008567:+|nuORF	REV__ENST00000488706.1_1_10:71007290-71008567:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	979.065673828125	1	978.657096	977.649819	0.67477	0.00066037	3.6597	0.0035816	4.3344	0.0042419	978.6635944505533	114.05	0.30915	114.05	113.85	114.16	0					7	5	2	0	0	0	0.972	1	41847	41847		2.8892	0	1	6550900	+		59222	19986	43214	43547	57729	57729					0.16010042430320937
VLKRVVKHLRK	11	Unmodified	_VLKRVVKHLRK_					0	0	0			REV__ENST00000488706.1_1_10:71007290-71008567:+|nuORF	REV__ENST00000488706.1_1_10:71007290-71008567:+|nuORF	MSMS	A375_MHC_IP_R2	2	688.4833374023438	2	688.472255	1374.92996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.91	1	104.67	104.17	105.17	0.76428								0	0	0	0.1636	1	39332	39332		0	0	1		+		59223	19986	43215	43548	57730	57730					0.25748958701092306
VLKSGEPLF	9	Unmodified	_VLKSGEPLF_					0	0	0			REV__ENSG00000103485|ENST00000395384|QPRT	REV__ENSG00000103485|ENST00000395384|QPRT	MULTI-SECPEP	A375_MHC_IP_R2	2	495.68707275390625	2	495.286943	988.559333	-0.4762	-0.00023586	-0.58566	-0.00029007	-1.0619	-0.00052593	495.2864757214787	64.765	0.76115	65.503	65.257	66.018	0.73811					22	14	2	0	0	0	0.13064	1	24546	24546		56.177	0.6743	1	6853200	+		59224	17278	43216	43549	57731	57731					0.06459528591381059
VLKSPHDY	8	Unmodified	_VLKSPHDY_					0	0	0			REV__GLB1|p.P656L|1|0.32|ENSG00000170266|chr3:32997112-32997112|G/A|missense_variant	REV__GLB1|p.P656L|1|0.32|ENSG00000170266|chr3:32997112-32997112|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	479.690185546875	2	479.753267	957.491981	-0.4249	-0.00020385	0.23305	0.00011181	-0.19185	-9.2041E-05	479.7534054373095	60.286	0.40677	60.286	60.057	60.464	0					13	7	2	0	0	0	0.75322	1	21619	21619		19.439	1.304	1	2210200	+		59225	26684	43217	43550	57732	57732					0.011534983804153853
VLKVFLENV	9	Unmodified	_VLKVFLENV_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	A375_MHC_IP_R1	1	531.3508911132812	2	530.823692	1059.63283	-0.50078	-0.00026583	-0.060076	-3.189E-05	-0.56086	-0.00029772	530.8235884226228	92.04	0.60626	92.04	91.706	92.312	0					23	10	3	0	0	0	0.094655	1	33739	33739		51.63	0.77478	1	5072300			59226	6303	43218	43551	57733	57733					0.10540077033851958
VLKVFLENV	9	Unmodified	_VLKVFLENV_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	A375_MHC_IP_R2	2	531.2236938476562	2	530.823692	1059.63283	-0.53709	-0.0002851	0.14399	7.6432E-05	-0.39311	-0.00020867	530.8236987459769	91.157	0.50541	91.891	91.616	92.122	0.73451					24	9	3	0	0	0	0.0099638	1	34641	34641		121.35	60.956	1	4824700			59227	6303	43218	43551	57734	57734					0.10540077033851958
VLKWFWKSP	9	Unmodified	_VLKWFWKSP_					0	0	0			REV__nc|ENSG00000118200|Q08AD1|CAMSAP2	REV__nc|ENSG00000118200|Q08AD1|CAMSAP2	MSMS	A375_MHC_IP_R2	2	397.5956115722656	3	397.56221	1189.6648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.342	1	21.962	21.462	22.462	0.61932								0	0	0	0.15486	1	6711	6711		12.873	5.7709	1		+		59228	27192	43219	43552	57735	57735					0.07755489507644597
VLKWLYIE	8	Unmodified	_VLKWLYIE_					0	0	0			REV__ENSG00000054938|ENST00000376332|CHRDL2	REV__ENSG00000054938|ENST00000376332|CHRDL2	MULTI-SECPEP	A375_MHC_IP_R2	2	1063.1578369140625	1	1063.61864	1062.61137	0.06406	6.8135E-05	2.0938	0.002227	2.1579	0.0022951	1063.6218587855003	122.51	0.65855	122.89	122.77	123.43	0.3766					18	12	2	0	0	0	0.972	1	46982	46982		9.3474	1.4373	1	169480000	+		59229	16409	43220	43553	57736	57736					0.08256692005102195
VLKYERSL	8	Unmodified	_VLKYERSL_					0	0	0			REV__ENST00000462687.1_1_1:155880190-155880552:-|nuORF	REV__ENST00000462687.1_1_1:155880190-155880552:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	503.6478576660156	2	504.297842	1006.58113	-0.3778	-0.00019052	0.95803	0.00048313	0.58023	0.00029261	504.29831101232105	73.881	0.45551	73.881	73.64	74.095	0					12	8	2	0	0	0	0.90775	1	26938	26938		14.838	7.7366	1	1044700	+		59230	19373	43221	43554	57737	57737					0.0781033333993264
VLLAQIIQV	9	Unmodified	_VLLAQIIQV_					0	0	0		nc|ENSG00000166833|Q8IVL1-4|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;NAV2|p.Y844Cfs*16|1|0.33|ENSG00000166833|chr11:19948896-19948897|TA/-|frameshift_variant	nc|ENSG00000166833|Q8IVL1-4|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	MULTI-SECPEP	A375_MHC_IP_R2	2	499.1562194824219	2	498.826235	995.637917	-0.44902	-0.00022398	0.1089	5.4324E-05	-0.34012	-0.00016966	498.8264592722385	92.097	0.45247	92.836	92.585	93.038	0.73902					13	8	2	0	0	0	0.47368	1	34981	34981		26.884	5.137	1	725330			59231	7116	43222	43555	57738	57738					0.13992380896479517
VLLAQIIQV	9	Unmodified	_VLLAQIIQV_					0	0	0		nc|ENSG00000166833|Q8IVL1-4|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;NAV2|p.Y844Cfs*16|1|0.33|ENSG00000166833|chr11:19948896-19948897|TA/-|frameshift_variant	nc|ENSG00000166833|Q8IVL1-4|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	MULTI-MATCH	A375_MHC_IP_R1	1		2	498.826235	995.637917	-0.20982	-0.00010467	-0.42827	-0.00021363	-0.6381	-0.0003183	498.8261912041237	93.139	0.45898	93.139	92.922	93.381	0	0.15175	-0.00024188	NaN	26.884	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	856300			59232	7116	43222	43555							0.13992380896479517
VLLARQSNV	9	Unmodified	_VLLARQSNV_					0	0	0			REV__ENSG00000176903|ENST00000316836|PNMA1	REV__ENSG00000176903|ENST00000316836|PNMA1	MULTI-MSMS	A375_MHC_IP_R1	1	500.70068359375	2	500.300916	998.587279	-0.088856	-4.4455E-05	-0.43935	-0.00021981	-0.5282	-0.00026426	500.3006450819264	21.782	0.30497	21.782	21.555	21.86	0					8	5	2	0	0	0	0.44024	2	5800	5771;5800		22.736	4.5899	1	1629800	+		59233	21426	43223	43556	57739;57740	57740					0.08792851571467963
VLLARYVW	8	Unmodified	_VLLARYVW_					0	0	0			REV__ENSG00000163312|ENST00000295488|HELQ	REV__ENSG00000163312|ENST00000295488|HELQ	MSMS	A375_MHC_IP_R1	1	510.20416259765625	2	510.30547	1018.59639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118	1	118	117.5	118.5	0								0	0	0	0.16876	1	43389	43389		9.3474	0.75416	1		+		59234	20350	43224	43557	57741	57741					0.08783244927792566
VLLCSHVL	8	Carbamidomethyl (C)	_VLLC(Carbamidomethyl (C))SHVL_	VLLC(1)SHVL		VLLC(83)SHVL		0	1	0			REV__ENST00000524486.5_1_11:802912-803251:-|nuORF	REV__ENST00000524486.5_1_11:802912-803251:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	471.1677551269531	2	470.767863	939.521173	-0.6651	-0.00031311	-1.1007	-0.0005182	-1.7658	-0.0008313	470.7679797103698	44.585	0.86516	45.354	45.086	45.951	0.76909					29	16	2	0	0	0	0.22228	1	16604	16604		82.939	19.546	1	4918900	+		59235	25753	43225	43558	57742	57742	85				0.048993194050581224
VLLDHDVPE	9	Unmodified	_VLLDHDVPE_					0	0	0		nc|ENSG00000198276|Q9NWZ5-4|UCKL1;ENSG00000198276|ENST00000354216|UCKL1;ENST00000358711.7_1_20:62571331-62572425:-|nuORF	nc|ENSG00000198276|Q9NWZ5-4|UCKL1	nc|ENSG00000198276|Q9NWZ5-4|UCKL1	MULTI-SECPEP	A375_MHC_IP_R1	1	519.16845703125	2	518.769114	1035.52368	-0.58018	-0.00030098	-0.32013	-0.00016607	-0.90031	-0.00046705	518.7691141172013	52.516	0.40691	52.516	52.287	52.694	0					13	7	2	0	0	0	0.58271	1	18670	18670		26.884	0	1	5445700			59236	9249	43226	43559	57743	57743					0.007334463437018712
VLLDHDVPE	9	Unmodified	_VLLDHDVPE_					0	0	0		nc|ENSG00000198276|Q9NWZ5-4|UCKL1;ENSG00000198276|ENST00000354216|UCKL1;ENST00000358711.7_1_20:62571331-62572425:-|nuORF	nc|ENSG00000198276|Q9NWZ5-4|UCKL1	nc|ENSG00000198276|Q9NWZ5-4|UCKL1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1686401367188	2	518.769114	1035.52368	-0.98451	-0.00051074	-0.17355	-9.0032E-05	-1.1581	-0.00060077	518.7691499195683	51.84	0.51074	52.592	52.321	52.831	0.75225					21	9	3	0	0	0	0.47368	1	19493	19493		34.102	1.797	1	3686100			59237	9249	43226	43559	57744	57744					0.007334463437018712
VLLDHIQSA	9	Unmodified	_VLLDHIQSA_					0	0	0		nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;MON2|p.L1675Ffs*21|1|0.57|ENSG00000061987|chr12:62592617-62592618|-/T|frameshift_variant;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF	nc|ENSG00000061987|Q7Z3U7-2|MON2	nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-MSMS	A375_MHC_IP_R1	1	498.6792907714844	2	498.279649	994.544745	-0.46088	-0.00022965	0.084319	4.2015E-05	-0.37656	-0.00018763	498.2796899761632	52.502	0.76003	52.502	52.186	52.946	0					26	14	3	0	0	0	0.012447	1	18687	18687		93.166	24.061	1	4468200			59238	1324	43227	43560	57745	57745					0.047254564432250845
VLLDHIQSA	9	Unmodified	_VLLDHIQSA_					0	0	0		nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;MON2|p.L1675Ffs*21|1|0.57|ENSG00000061987|chr12:62592617-62592618|-/T|frameshift_variant;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF	nc|ENSG00000061987|Q7Z3U7-2|MON2	nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-SECPEP	A375_MHC_IP_R2	2	498.6790466308594	2	498.279649	994.544745	-0.79476	-0.00039601	0.11884	5.9214E-05	-0.67592	-0.0003368	498.2796995078513	51.713	0.51074	52.465	52.321	52.831	0.75225					17	9	2	0	0	0	0.05217	1	19480	19480		70.332	10.258	1	4136100			59239	1324	43227	43560	57746	57746					0.047254564432250845
VLLDHLSLA	9	Unmodified	_VLLDHLSLA_					0	0	0		ENSG00000168811|ENST00000699704|IL12A;ENST00000468862.5_1_3:159706816-159710915:+|nuORF;ENST00000496308.1_1_3:159706816-159711351:+|nuORF	ENSG00000168811|ENST00000699704|IL12A	ENSG00000168811|ENST00000699704|IL12A	MULTI-MSMS	A375_MHC_IP_R1	1	491.1919250488281	2	490.792392	979.570232	-0.52846	-0.00025936	-0.23092	-0.00011333	-0.75938	-0.0003727	490.79224054636467	90.971	1.3161	90.971	90.59	91.906	0					50	25	3	0	0	0	0.0095277	1	33398	33398		108	33.574	1	16213000			59240	7348	43228	43561	57747	57747					0.07962930965652504
VLLDHLSLA	9	Unmodified	_VLLDHLSLA_					0	0	0		ENSG00000168811|ENST00000699704|IL12A;ENST00000468862.5_1_3:159706816-159710915:+|nuORF;ENST00000496308.1_1_3:159706816-159711351:+|nuORF	ENSG00000168811|ENST00000699704|IL12A	ENSG00000168811|ENST00000699704|IL12A	MULTI-SECPEP	A375_MHC_IP_R2	2	491.1917419433594	2	490.792392	979.570232	-0.4395	-0.0002157	0.079147	3.8845E-05	-0.36035	-0.00017686	490.7923898838259	90.044	1.1702	90.776	90.493	91.664	0.7318					55	22	4	0	0	0	0.011358	1	34227	34227		108	43.761	1	14591000			59241	7348	43228	43561	57748	57748					0.07962930965652504
VLLDTNYNL	9	Unmodified	_VLLDTNYNL_					0	0	0		ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1843872070312	2	532.784764	1063.55498	-0.59964	-0.00031948	0.01134	6.0418E-06	-0.5883	-0.00031344	532.7847887969871	100.83	1.6707	100.83	100.48	102.15	0					73	32	4	0	0	0	0.021422	1	37006	37006		108	45.424	1	21680000			59242	3851	43229	43562	57749	57749					0.025740193777892273
VLLDTNYNL	9	Unmodified	_VLLDTNYNL_					0	0	0		ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	MULTI-MSMS	A375_MHC_IP_R2	2	532.7295532226562	2	532.784764	1063.55498	-0.49675	-0.00026466	-0.10029	-5.3431E-05	-0.59704	-0.00031809	532.7846728595003	100.08	1.379	100.84	100.42	101.8	0.76278					66	26	4	0	0	0	0.0061124	1	38027	38027		164.52	64.144	1	26938000			59243	3851	43229	43562	57750	57750					0.025740193777892273
VLLEIWLKL	9	Unmodified	_VLLEIWLKL_					0	0	0			REV__nc|ENSG00000260727|Q8MH63|SLC7A5P1	REV__nc|ENSG00000260727|Q8MH63|SLC7A5P1	MSMS	A375_MHC_IP_R2	2	376.2763671875	3	376.245999	1125.71617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.902	1	20.513	20.013	21.013	0.61029								0	0	0	0.15486	1	6151	6151		5.2969	1.1074	1		+		59244	27535	43230	43563	57751	57751					0.15833813481708603
VLLEKNRSYRL	11	Unmodified	_VLLEKNRSYRL_					0	0	0		DHX16|p.A89V|1|0.31|ENSG00000204560|chr6:30671216-30671216|G/A|missense_variant	DHX16|p.A89V|1|0.31|ENSG00000204560|chr6:30671216-30671216|G/A|missense_variant	DHX16|p.A89V|1|0.31|ENSG00000204560|chr6:30671216-30671216|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	464.6968078613281	3	464.277021	1389.80923	-0.74251	-0.00034473	3.7385	0.0017357	2.9959	0.0013909	464.27829036651104	65.496	0.30537	66.234	66.069	66.375	0.73812					8	5	2	0	0	0	0.73332	1	24831	24831		2.6312	0	1	508700			59245	739	43231	43564	57752	57752					0.129920861969822
VLLEQEKTFFT	11	Unmodified	_VLLEQEKTFFT_					0	0	0		ENST00000464735.1_1_13:24164310-24168479:+|nuORF;ENSG00000127863|ENST00000248484|TNFRSF19;nc|ENSG00000127863|Q9NS68|TNFRSF19	ENST00000464735.1_1_13:24164310-24168479:+|nuORF	ENST00000464735.1_1_13:24164310-24168479:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	678.3911743164062	2	677.866285	1353.71802	-0.5199	-0.00035243	-0.22253	-0.00015085	-0.74244	-0.00050327	677.8660412799729	88.587	0.66298	88.587	88.307	88.97	0					32	12	4	0	0	0	0.00090302	1	32567	32567		105.35	53.715	1	13203000			59246	4105	43232	43565	57753	57753					0.055307777089637966
VLLEQEKTFFT	11	Unmodified	_VLLEQEKTFFT_					0	0	0		ENST00000464735.1_1_13:24164310-24168479:+|nuORF;ENSG00000127863|ENST00000248484|TNFRSF19;nc|ENSG00000127863|Q9NS68|TNFRSF19	ENST00000464735.1_1_13:24164310-24168479:+|nuORF	ENST00000464735.1_1_13:24164310-24168479:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	678.2655029296875	2	677.866285	1353.71802	-0.58435	-0.00039611	0.12877	8.7291E-05	-0.45557	-0.00030882	677.866214296026	87.813	0.86176	88.545	88.266	89.128	0.7318					36	16	3	0	0	0	8.2679E-15	2	33388	33388;33494		187.22	125.62	1	10280000			59247	4105	43232	43565	57754;57755	57754					0.055307777089637966
VLLESEQFL	9	Unmodified	_VLLESEQFL_					0	0	0		ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF;ENSG00000140319|ENST00000267884|SRP14	ENST00000558243.1_1_15:40330963-40331317:-|nuORF	ENST00000558243.1_1_15:40330963-40331317:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	539.6951293945312	2	539.294965	1076.57538	-0.34083	-0.00018381	0.29157	0.00015724	-0.049263	-2.6568E-05	539.2950769725948	116.32	1.1196	116.32	115.89	117.01	0					53	21	4	0	0	0	0.01001	2	42610	42610;42832		123.45	51.528	1	23218000			59248	5141	43233	43566	57756;57757	57756					0.04015190037625871
VLLESEQFL	9	Unmodified	_VLLESEQFL_					0	0	0		ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF;ENSG00000140319|ENST00000267884|SRP14	ENST00000558243.1_1_15:40330963-40331317:-|nuORF	ENST00000558243.1_1_15:40330963-40331317:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	539.6946411132812	2	539.294965	1076.57538	-0.67353	-0.00036323	-0.1694	-9.1355E-05	-0.84293	-0.00045459	539.2948072480245	115.44	1.014	116.13	115.83	116.85	0.68999					52	19	4	0	0	0	0.01001	1	43470	43470		123.45	41.838	1	26469000			59249	5141	43233	43566	57758	57758					0.04015190037625871
VLLESGLYH	9	Unmodified	_VLLESGLYH_					0	0	0		ENST00000463418.5_1_2:158157328-158158798:+|nuORF	ENST00000463418.5_1_2:158157328-158158798:+|nuORF	ENST00000463418.5_1_2:158157328-158158798:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1931762695312	2	515.782025	1029.5495	-0.59965	-0.00030929	2.1803	0.0011246	1.5807	0.00081529	516.2840979672748	83.639	0.30335	83.639	83.483	83.786	0					8	5	2	0	0	0	0.43707	1	30611	30611		28.487	9.2299	1	973550			59250	12213	43234	43567	57759	57759					0.035903405860153725
VLLFHPSSF	9	Unmodified	_VLLFHPSSF_					0	0	0			REV__CD300E|p.L169F|1|0.32|ENSG00000186407|chr17:74612766-74612766|G/A|missense_variant	REV__CD300E|p.L169F|1|0.32|ENSG00000186407|chr17:74612766-74612766|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	523.6529541015625	2	523.78711	1045.55967	-0.48816	-0.00025569	0.012852	6.7318E-06	-0.4753	-0.00024896	524.2887364597836	89.522	0.40739	89.522	89.272	89.679	0					10	7	2	0	0	0	0.43707	1	32861	32861		36.044	15.173	1	1737900	+		59251	15613	43235	43568	57760	57760					0.038709483112370435
VLLGATHG	8	Unmodified	_VLLGATHG_					0	0	0		NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1;ENST00000587163.1_1_18:21113286-21114508:-|nuORF	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	384.62445068359375	2	384.224146	766.433738	-0.069419	-2.6672E-05	1.4335	0.00055077	1.3641	0.0005241	384.224519989104	143.47	0.28644	143.47	143.34	143.63	0					7	5	2	0	0	0	0.77839	1	55041	55041		0.79363	0	1	1510300			59252	5244	43236	43569	57761	57761					0.0411786152581044
VLLGATHG	8	Unmodified	_VLLGATHG_					0	0	0		NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1;ENST00000587163.1_1_18:21113286-21114508:-|nuORF	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	NPC1|p.L1247Tfs*2|1|0.23|ENSG00000141458|chr18:23533362-23533371|ACTGAGTAAG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	384.6246032714844	2	384.224146	766.433738	0.077436	2.9753E-05	1.361	0.00052291	1.4384	0.00055267	384.22459078301694	143.49	0.29991	143.51	143.39	143.69	0.024414					8	5	2	0	0	0	0.77839	1	56094	56094		0.79363	0	1	1750400			59253	5244	43236	43569	57762	57762					0.0411786152581044
VLLGENVEL	9	Unmodified	_VLLGENVEL_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	A375_MHC_IP_R1	1	493.68182373046875	2	493.281857	984.549162	-0.21619	-0.00010664	0.28188	0.00013905	0.065693	3.2405E-05	493.2819445208176	105.74	0.60851	105.74	105.5	106.11	0					18	11	2	0	0	0	0.067501	1	38821	38821		57.471	11.45	1	2069600			59254	5371	43237	43570	57763	57763					0.05626920866131968
VLLGENVEL	9	Unmodified	_VLLGENVEL_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	A375_MHC_IP_R1	1	985.0431518554688	1	985.556438	984.549162	0.30617	0.00030175	0.42726	0.00042109	0.73343	0.00072284	985.5568441909827	105.76	0.50703	105.76	105.45	105.96	0					15	9	2	0	0	0	0.034037	1	38785	38785		99.799	24.87	1	3481400			59255	5371	43237	43570	57764	57764					0.05626920866131968
VLLGENVEL	9	Unmodified	_VLLGENVEL_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.N3714Tfs*2|1|0.12|ENSG00000143341|chr1:186113986-186113986|A/-|frameshift_variant	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	A375_MHC_IP_R2	2	986.1538696289062	1	985.556438	984.549162	0.061391	6.0505E-05	0.35048	0.00034542	0.41187	0.00040593	985.5568953529678	104.91	0.65952	105.68	105.26	105.92	0.76308					16	12	2	0	0	0	0.0098183	1	39687	39687		114.65	14.85	1	3024700			59256	5371	43237	43570	57765	57765					0.05626920866131968
VLLGGVASL	9	Unmodified	_VLLGGVASL_					0	0	0		ENSG00000112514|ENST00000488034|CUTA	ENSG00000112514|ENST00000488034|CUTA	ENSG00000112514|ENST00000488034|CUTA	MULTI-SECPEP	A375_MHC_IP_R2	2	828.9187622070312	1	828.518931	827.511654	-0.71695	-0.00059401	-0.24782	-0.00020532	-0.96477	-0.00079933	828.5189996554659	108.96	0.51086	109.7	109.42	109.93	0.74684					14	9	2	0	0	0	0.054184	1	41136	41136		70.716	18.447	1	1976800			59257	3092	43238	43571	57766	57766					0.09099874391188223
VLLGHIFYV	9	Unmodified	_VLLGHIFYV_					0	0	0		ENSG00000129933|ENST00000262815|MAU2;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;nc|ENSG00000129933|Q9Y6X3-3|MAU2;ENST00000587709.5_1_19:19459550-19466588:+|nuORF;ENST00000589947.7_1_19:19459550-19465349:+|nuORF	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-MSMS	A375_MHC_IP_R1	1	531.2133178710938	2	530.813128	1059.6117	-0.18266	-9.696E-05	0.38892	0.00020645	0.20626	0.00010949	530.8131887645159	115.2	1.269	115.2	114.92	116.19	0					63	24	4	0	0	0	0.0095977	1	42215	42215		109.15	62.233	1	30097000			59258	4214	43239	43572	57767	57767					0.0842811172499296
VLLGHIFYV	9	Unmodified	_VLLGHIFYV_					0	0	0		ENSG00000129933|ENST00000262815|MAU2;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;nc|ENSG00000129933|Q9Y6X3-3|MAU2;ENST00000587709.5_1_19:19459550-19466588:+|nuORF;ENST00000589947.7_1_19:19459550-19465349:+|nuORF	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-MSMS	A375_MHC_IP_R2	2	531.2124633789062	2	530.813128	1059.6117	-0.4279	-0.00022713	-0.29523	-0.00015671	-0.72313	-0.00038384	530.8128986875815	114.24	1.5238	114.95	114.53	116.06	0.70985					56	29	4	0	0	0	0.0095977	1	43012	43012		109.15	67.06	1	22294000			59259	4214	43239	43572	57768	57768					0.0842811172499296
VLLGKGLL	8	Unmodified	_VLLGKGLL_					0	0	0			REV__ENSG00000185002|ENST00000332958|RFX6	REV__ENSG00000185002|ENST00000332958|RFX6	MULTI-SECPEP	A375_MHC_IP_R1	1	407.1839294433594	2	406.783839	811.553125	-0.25511	-0.00010378	0.63955	0.00026016	0.38444	0.00015638	406.78406133758796	87.94	0.45874	87.94	87.696	88.154	0					13	8	2	0	0	0	0.73517	1	32288	32288		42.968	0	1	1541100	+		59260	21856	43240	43573	57769	57769					0.13981055150509292
VLLGKVYVV	9	Unmodified	_VLLGKVYVV_					0	0	0		ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	MULTI-SECPEP	A375_MHC_IP_R1	1	495.7231140136719	2	495.323328	988.632104	-0.47582	-0.00023568	0.02688	1.3314E-05	-0.44894	-0.00022237	495.32328099849855	83.862	1.5753	83.862	83.38	84.955	0					81	30	5	0	0	0	0.20567	1	30823	30823		46.021	13.904	1	72971000			59261	3247	43241	43574	57770	57770					0.13733282384794165
VLLGKVYVV	9	Unmodified	_VLLGKVYVV_					0	0	0		ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	MULTI-MSMS	A375_MHC_IP_R2	2	495.8828125	2	495.323328	988.632104	-0.47515	-0.00023535	-0.22335	-0.00011063	-0.6985	-0.00034598	495.32315644603773	82.779	1.3673	83.522	83.144	84.511	0.74293					70	26	4	0	0	0	0.034481	2	31525	31525;31609		71.134	26.727	1	72480000			59262	3247	43241	43574	57771;57772	57771					0.13733282384794165
VLLICWFPVL	10	Carbamidomethyl (C)	_VLLIC(Carbamidomethyl (C))WFPVL_	VLLIC(1)WFPVL		VLLIC(40)WFPVL		0	1	0		ENSG00000188822|ENST00000374472|CNR2	ENSG00000188822|ENST00000374472|CNR2	ENSG00000188822|ENST00000374472|CNR2	MULTI-MSMS	A375_MHC_IP_R1	1	630.7645263671875	2	630.36467	1258.71479	-0.69813	-0.00044008	-0.64737	-0.00040808	-1.3455	-0.00084815	630.3644501556294	64.854	0.50664	64.854	64.649	65.156	0					19	9	3	0	0	0	0.2945	1	23486	23486		40.449	7.6629	1	2934400			59263	8940	43242	43575	57773	57773	43				0.09577856121291006
VLLICWFPVL	10	Carbamidomethyl (C)	_VLLIC(Carbamidomethyl (C))WFPVL_	VLLIC(1)WFPVL		VLLIC(50)WFPVL		0	1	0		ENSG00000188822|ENST00000374472|CNR2	ENSG00000188822|ENST00000374472|CNR2	ENSG00000188822|ENST00000374472|CNR2	MULTI-MSMS	A375_MHC_IP_R2	2	630.7459716796875	2	630.36467	1258.71479	-0.73665	-0.00046436	-0.67583	-0.00042602	-1.4125	-0.00089038	630.3642822396102	64.078	0.50787	64.819	64.547	65.054	0.74023					22	9	3	0	0	0	0.19587	2	24299	24299;24305		49.669	16.883	1	4383300			59264	8940	43242	43575	57774;57775	57774	43				0.09577856121291006
VLLIIRRPK	9	Unmodified	_VLLIIRRPK_					0	0	0			REV__nc|ENSG00000142657|P52209-2|PGD	REV__nc|ENSG00000142657|P52209-2|PGD	MSMS	A375_MHC_IP_R1	1	554.377197265625	2	554.389868	1106.76518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.415	1	37.415	36.915	37.915	0								0	0	0	0.15486	1	12612	12612		2.3027	0	1		+		59265	19317	43243	43576	57776	57776					0.21607146561291302
VLLIMLALR	9	Unmodified	_VLLIMLALR_					0	0	0		ENSG00000095739|ENST00000375533|BAMBI;ENST00000497699.1_1_10:28970877-28971327:+|nuORF	ENSG00000095739|ENST00000375533|BAMBI	ENSG00000095739|ENST00000375533|BAMBI	MULTI-SECPEP	A375_MHC_IP_R2	2	520.7160034179688	2	521.34628	1040.67801	-0.42911	-0.00022372	-1.2682	-0.00066119	-1.6973	-0.0008849	521.3451705228293	149.57	1.803	149.59	148.21	150.01	0.01825					102	65	2	0	0	0	0.81896	1	57631	57631		0	0	1	248610			59266	2047	43244	43577	57777	57777					0.15929604295365607
VLLIMLALR	9	Unmodified	_VLLIMLALR_					0	0	0		ENSG00000095739|ENST00000375533|BAMBI;ENST00000497699.1_1_10:28970877-28971327:+|nuORF	ENSG00000095739|ENST00000375533|BAMBI	ENSG00000095739|ENST00000375533|BAMBI	MULTI-MATCH	A375_MHC_IP_R1	1		2	521.34628	1040.67801	-0.86123	-0.000449	-1.0163	-0.00052984	-1.8775	-0.00097884	521.3452725810853	149.52	1.2966	149.52	148.71	150	0	-0.03456	0.0001814	NaN	0	79	48	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	379010			59267	2047	43244	43577							0.15929604295365607
VLLIRNKEWRV	11	Unmodified	_VLLIRNKEWRV_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-MSMS	A375_MHC_IP_R1	1	476.3607482910156	3	475.961144	1424.8616	-0.73146	-0.00034815	0.070156	3.3392E-05	-0.66131	-0.00031476	475.96126721984876	84.414	2.5377	84.414	84.041	86.578	0					173	49	6	0	0	0	0.73502	2	31080	31080;31214		4.1166	1.4854	1	347220000	+		59268	18555	43245	43578	57778;57779	57778					0.1661666933057404
VLLIRNKEWRV	11	Unmodified	_VLLIRNKEWRV_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-SECPEP	A375_MHC_IP_R1	1	476.720947265625	3	475.961144	1424.8616	-0.76762	-0.00036536	0.27279	0.00012984	-0.49483	-0.00023552	475.96105115910365	90.885	0.96369	90.885	90.387	91.35	0					20	18	2	0	0	0	0.99881	1	33322	33322		0.50596	0.41111	1	719890	+		59269	18555	43245	43578	57780	57780					0.1661666933057404
VLLIRNKEWRV	11	Unmodified	_VLLIRNKEWRV_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-MSMS	A375_MHC_IP_R2	2	476.6949462890625	3	475.961144	1424.8616	-0.48999	-0.00023322	-0.46297	-0.00022035	-0.95296	-0.00045357	475.9610052932653	83.386	3.3101	84.125	83.745	87.055	0.73962					192	64	6	0	0	0	0.73658	1	32069	32069		2.6312	0	1	328400000	+		59270	18555	43245	43578	57781	57781					0.1661666933057404
VLLIVGKLILK	11	Unmodified	_VLLIVGKLILK_					0	0	0			REV__ENST00000532383.5_1_11:10826351-10827587:-|nuORF	REV__ENST00000532383.5_1_11:10826351-10827587:-|nuORF	MSMS	A375_MHC_IP_R1	1	604.5086059570312	2	604.93886	1207.86317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.91	1	100.91	100.41	101.41	0								0	0	0	0.16353	1	37091	37091		0.35063	0	1		+		59271	25866	43246	43579	57782	57782					0.26754910366639706
VLLKARLVPA	10	Unmodified	_VLLKARLVPA_					0	0	0		nc|ENSG00000144369|Q6P995-2|FAM171B;ENSG00000144369|ENST00000304698|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	MULTI-SECPEP	A375_MHC_IP_R1	1	360.2813720703125	3	360.581493	1078.72265	0.30632	0.00011045	-0.088134	-3.178E-05	0.21819	7.8675E-05	360.58140074884363	53.841	1.0624	53.841	53.505	54.567	0					60	20	4	0	0	0	0.64716	1	19158	19158		30.703	23.602	1	48063000			59272	5481	43247	43580	57783	57783					0.18643751433069156
VLLKARLVPA	10	Unmodified	_VLLKARLVPA_					0	0	0		nc|ENSG00000144369|Q6P995-2|FAM171B;ENSG00000144369|ENST00000304698|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	MULTI-SECPEP	A375_MHC_IP_R1	1	540.7687377929688	2	540.368601	1078.72265	-0.47133	-0.00025469	0.14078	7.6073E-05	-0.33055	-0.00017862	540.3686247692996	53.852	0.7083	53.852	53.555	54.263	0					28	13	3	0	0	0	0.24752	1	19193	19193		53.833	36.89	1	9582900			59273	5481	43247	43580	57784	57784					0.18643751433069156
VLLKARLVPA	10	Unmodified	_VLLKARLVPA_					0	0	0		nc|ENSG00000144369|Q6P995-2|FAM171B;ENSG00000144369|ENST00000304698|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	MULTI-MSMS	A375_MHC_IP_R2	2	360.98138427734375	3	360.581493	1078.72265	-0.71474	-0.00025772	0.20817	7.5063E-05	-0.50657	-0.00018266	360.5815314217758	52.819	1.3252	53.57	53.284	54.609	0.75105					65	25	4	0	0	0	0.21482	1	19886	19886		47.732	22.741	1	55803000			59274	5481	43247	43580	57785	57785					0.18643751433069156
VLLKARLVPA	10	Unmodified	_VLLKARLVPA_					0	0	0		nc|ENSG00000144369|Q6P995-2|FAM171B;ENSG00000144369|ENST00000304698|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	MULTI-SECPEP	A375_MHC_IP_R2	2	540.21923828125	2	540.368601	1078.72265	-1.3603	-0.00073504	0.27133	0.00014662	-1.0889	-0.00058843	540.3687579451333	52.812	0.50699	53.563	53.335	53.842	0.75105					22	9	3	0	0	0	0.24752	1	19909	19909		53.833	34.576	1	8561900			59275	5481	43247	43580	57786	57786					0.18643751433069156
VLLKIIRKKKK	11	Unmodified	_VLLKIIRKKKK_					0	0	0			REV__GPR65|p.E220K|1|0.33|ENSG00000140030|chr14:88011505-88011505|G/A|missense_variant	REV__GPR65|p.E220K|1|0.33|ENSG00000140030|chr14:88011505-88011505|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	684.0709838867188	2	684.002857	1365.99116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.98	1	107.74	107.24	108.24	0.75787								0	0	0	0.1636	1	40425	40425		0	0	1		+		59276	26703	43248	43581	57787	57787					0.32280470680530016
VLLKPNTSV	9	Unmodified	_VLLKPNTSV_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	A375_MHC_IP_R2	2	486.20001220703125	2	485.800217	969.585882	-0.49925	-0.00024254	-0.2301	-0.00011178	-0.72935	-0.00035432	485.8001638650431	68.092	0.4079	68.827	68.611	69.018	0.73511					12	7	2	0	0	0	0.63327	1	25824	25824		24.021	2.2739	1	1607000			59277	7431	43249	43582	57788	57788					0.09987217482716915
VLLKSPSQV	9	Unmodified	_VLLKSPSQV_					0	0	0		ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;ENST00000548709.1_1_12:56490921-56492754:+|nuORF;nc|ENSG00000065361|P21860-5|ERBB3	ENSG00000065361|ENST00000267101|ERBB3	ENSG00000065361|ENST00000267101|ERBB3	MULTI-SECPEP	A375_MHC_IP_R1	1	486.2001037597656	2	485.800217	969.585882	-0.092758	-4.5062E-05	-0.36203	-0.00017588	-0.45479	-0.00022094	485.8000191077964	43.304	0.50946	43.304	43.043	43.553	0					19	9	3	0	0	0	0.028087	1	15051	15051		96.367	18.217	1	3723700			59278	1379	43250	43583	57789	57789					0.09987217482716915
VLLKSPSQV	9	Unmodified	_VLLKSPSQV_					0	0	0		ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;ENST00000548709.1_1_12:56490921-56492754:+|nuORF;nc|ENSG00000065361|P21860-5|ERBB3	ENSG00000065361|ENST00000267101|ERBB3	ENSG00000065361|ENST00000267101|ERBB3	MULTI-SECPEP	A375_MHC_IP_R2	2	486.19976806640625	2	485.800217	969.585882	-0.5387	-0.0002617	-0.24288	-0.00011799	-0.78158	-0.00037969	485.8000500468285	42.441	0.40706	43.213	43.014	43.421	0.7724					14	7	2	0	0	0	0.01147	1	15802	15802		110.55	31.825	1	4252800			59279	1379	43250	43583	57790	57790					0.09987217482716915
VLLLKKLHK	9	Unmodified	_VLLLKKLHK_					0	0	0			REV__ENSG00000118322|ENST00000327245|ATP10B	REV__ENSG00000118322|ENST00000327245|ATP10B	MSMS	A375_MHC_IP_R1	1	546.6532592773438	2	546.386794	1090.75904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.846	1	44.846	44.346	45.346	0								0	0	0	0.15486	1	15666	15666		0	0	1		+		59280	18036	43251	43584	57791	57791					0.2172862832978808
VLLLKMLFF	9	Unmodified	_VLLLKMLFF_					0	0	0			REV__ENST00000356218.8_1_14:51955989-52156529:+|nuORF	REV__ENST00000356218.8_1_14:51955989-52156529:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	375.63665771484375	3	375.236446	1122.68751	0.3683	0.0001382	-0.1635	-6.1352E-05	0.20479	7.6846E-05	375.23639187657614	42.208	0.40424	42.208	41.932	42.336	0					13	7	2	0	0	0	0.69674	2	14650	14527;14650		4.5289	0.94181	1	1900500	+		59281	23830	43252	43585	57792;57793	57793					0.13107372580907395
VLLLKMLFF	9	Unmodified	_VLLLKMLFF_					0	0	0			REV__ENST00000356218.8_1_14:51955989-52156529:+|nuORF	REV__ENST00000356218.8_1_14:51955989-52156529:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	375.6363830566406	3	375.236446	1122.68751	0.077511	2.9085E-05	-0.052298	-1.9624E-05	0.025213	9.461E-06	375.2363117512104	41.282	0.35373	42.057	41.845	42.198	0.77451					10	6	2	0	0	0	0.74169	1	15348	15348		16.149	3.9084	1	2466600	+		59282	23830	43252	43585	57794	57794					0.13107372580907395
VLLLKMLFF	9	Unmodified	_VLLLKMLFF_					0	0	0			REV__ENST00000356218.8_1_14:51955989-52156529:+|nuORF	REV__ENST00000356218.8_1_14:51955989-52156529:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	375.236446	1122.68751	0.3683	0.0001382	-0.1635	-6.1352E-05	0.20479	7.6846E-05	375.23639187657614	42.208	0.40424	42.208	41.932	42.336	0	0.075766	-5.8662E-05	NaN	4.5289	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1900500	+		59283	23830	43252	43585							0.13107372580907395
VLLLLLLFF	9	Unmodified	_VLLLLLLFF_					0	0	0		nc|ENSG00000110148|P32239-3|CCKBR;ENSG00000110148|ENST00000334619|CCKBR;nc|ENSG00000110148|P32239-2|CCKBR	nc|ENSG00000110148|P32239-3|CCKBR	nc|ENSG00000110148|P32239-3|CCKBR	MULTI-SECPEP	A375_MHC_IP_R2	2	1091.126708984375	1	1090.72747	1089.72019	0.11133	0.00012143	1.2196	0.0013303	1.331	0.0014517	1091.731327996869	124.07	0.30526	124.4	124.24	124.55	0.32969					8	5	2	0	0	0	0.8175	1	47751	47751		0	0	1	20727000			59284	2922	43253	43586	57795	57795					0.1789190297542973
VLLLLLLLLRE	11	Unmodified	_VLLLLLLLLRE_					0	0	0			REV__ENST00000344924.7_1_7:134331590-134346213:+|nuORF	REV__ENST00000344924.7_1_7:134331590-134346213:+|nuORF	MSMS	A375_MHC_IP_R2	2	654.5830688476562	2	654.454874	1306.89519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.19	1	112.91	112.41	113.41	0.72458								0	0	0	0.16331	1	42295	42295		1.4819	0	1		+		59285	23765	43254	43587	57796	57796					0.25402278049796223
VLLLLLLLRR	10	Unmodified	_VLLLLLLLRR_					0	0	0		ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MSMS	A375_MHC_IP_R2	2	407.9288330078125	3	407.963826	1220.86965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.366	1	19.969	19.469	20.469	0.60308								0	0	0	0.15642	1	5943	5943		0	0	1				59286	7089	43255	43588	57797	57797					0.26804848318010954
VLLLLLVIFLK	11	Unmodified	_VLLLLLVIFLK_					0	0	0			REV__ENSG00000253598|ENST00000518568|SLC10A5	REV__ENSG00000253598|ENST00000518568|SLC10A5	MSMS	A375_MHC_IP_R2	2	642.4559936523438	2	642.456885	1282.89922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.03	1	121.48	120.98	121.98	0.44488								0	0	0	0.1636	1	46245	46245		0	0	1		+		59287	22855	43256	43589	57798	57798					0.2690836754347856
VLLLTRPGVP	10	Unmodified	_VLLLTRPGVP_					0	0	0			REV__ENST00000442496.1_1_22:37880295-37880663:-|nuORF	REV__ENST00000442496.1_1_22:37880295-37880663:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	533.1720581054688	2	532.844959	1063.67537	-0.81246	-0.00043292	0.77858	0.00041486	-0.033884	-1.8055E-05	532.845255307647	50.784	0.35337	51.538	51.361	51.715	0.75406					8	6	2	0	0	0	0.94311	1	19166	19166		1.8442	0	1	673620	+		59288	24817	43257	43590	57799	57799					0.14607472162083468
VLLNKFLLL	9	Unmodified	_VLLNKFLLL_					0	0	0		nc|ENSG00000197548|O95352-3|ATG7;nc|ENSG00000197548|O95352-2|ATG7;ENSG00000197548|ENST00000693202|ATG7	nc|ENSG00000197548|O95352-3|ATG7	nc|ENSG00000197548|O95352-3|ATG7	MULTI-SECPEP	A375_MHC_IP_R2	2	357.4490051269531	3	358.242477	1071.7056	-0.35616	-0.00012759	-0.39123	-0.00014015	-0.74739	-0.00026775	358.2423474355172	62.288	0.45847	63.03	62.824	63.282	0.74263					14	8	2	0	0	0	0.81039	1	23597	23597		1.1933	0.92432	1	858340			59289	9168	43258	43591	57800	57800					0.1726183082728312
VLLNKFLLL	9	Unmodified	_VLLNKFLLL_					0	0	0		nc|ENSG00000197548|O95352-3|ATG7;nc|ENSG00000197548|O95352-2|ATG7;ENSG00000197548|ENST00000693202|ATG7	nc|ENSG00000197548|O95352-3|ATG7	nc|ENSG00000197548|O95352-3|ATG7	MULTI-MATCH	A375_MHC_IP_R1	1		3	358.242477	1071.7056	0.13102	4.6937E-05	0.11023	3.949E-05	0.24125	8.6427E-05	358.2424304468319	63.325	0.40928	63.325	63.018	63.427	0	0.14728	0.00012579	NaN	0.26902	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1018500			59290	9168	43258	43591							0.1726183082728312
VLLNQATV	8	Unmodified	_VLLNQATV_					0	0	0			REV__ENSG00000167874|ENST00000301599|TMEM88	REV__ENSG00000167874|ENST00000301599|TMEM88	MULTI-MSMS	A375_MHC_IP_R1	1	429.2913513183594	2	429.258185	856.501818	-0.17306	-7.4287E-05	0.52474	0.00022525	0.35168	0.00015096	429.25833424538706	34.618	0.2514	34.618	34.456	34.708	0					7	4	2	0	0	0	0.7256	1	11449	11449		26.884	1.4843	1	1237500	+		59291	20800	43259	43592	57801	57801					0.06782686385804482
VLLNQATV	8	Unmodified	_VLLNQATV_					0	0	0			REV__ENSG00000167874|ENST00000301599|TMEM88	REV__ENSG00000167874|ENST00000301599|TMEM88	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	429.258185	856.501818	-0.17306	-7.4287E-05	0.52474	0.00022525	0.35168	0.00015096	429.25833424538706	34.618	0.2514	34.618	34.456	34.708	0	0.010308	4.063E-05	NaN	26.884	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1237500	+		59292	20800	43259	43592							0.06782686385804482
VLLPLQRRF	9	Unmodified	_VLLPLQRRF_					0	0	0		ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-3|RPAP1;nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENST00000565167.1_1_15:41810158-41813973:-|nuORF	ENSG00000103932|ENST00000304330|RPAP1	ENSG00000103932|ENST00000304330|RPAP1	MULTI-MSMS	A375_MHC_IP_R1	1	381.6451416015625	3	381.244992	1140.71315	0.059821	2.2807E-05	0.18711	7.1335E-05	0.24693	9.4142E-05	381.2451046990879	67.101	0.46111	67.101	66.836	67.297	0					17	8	3	0	0	0	0.46465	1	24308	24308		21.537	6.2885	1	2256800			59293	2474	43260	43593	57802	57802					0.14841983147539395
VLLPLQRRF	9	Unmodified	_VLLPLQRRF_					0	0	0		ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-3|RPAP1;nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENST00000565167.1_1_15:41810158-41813973:-|nuORF	ENSG00000103932|ENST00000304330|RPAP1	ENSG00000103932|ENST00000304330|RPAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	380.9296875	3	381.244992	1140.71315	-0.22256	-8.4849E-05	0.79258	0.00030217	0.57002	0.00021732	381.2451599093945	66.092	0.45971	66.83	66.577	67.037	0.73811					17	8	3	0	0	0	0.61452	1	25048	25048		20.415	8.9198	1	1118200			59294	2474	43260	43593	57803	57803					0.14841983147539395
VLLPLRVTL	9	Unmodified	_VLLPLRVTL_					0	0	0		ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	MULTI-MSMS	A375_MHC_IP_R1	1	512.7496948242188	2	512.349877	1022.6852	-0.1225	-6.2762E-05	-0.20177	-0.00010338	-0.32427	-0.00016614	512.3497308916756	115.81	1.0171	115.81	115.53	116.55	0					55	19	4	0	0	0	0.027818	2	42439	42439;42651		76.825	4.9025	1	43809000			59295	5021	43261	43594	57804;57805	57804					0.17476660167460523
VLLPLRVTL	9	Unmodified	_VLLPLRVTL_					0	0	0		ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	MULTI-SECPEP	A375_MHC_IP_R2	2	512.7491455078125	2	512.349877	1022.6852	-0.56184	-0.00028786	0.26884	0.00013774	-0.293	-0.00015012	512.3499595977783	114.79	1.2716	115.48	115.22	116.49	0.68999					57	24	4	0	0	0	0.05217	1	43237	43237		70.332	1.2271	1	49140000			59296	5021	43261	43594	57806	57806					0.17476660167460523
VLLQLTHFA	9	Unmodified	_VLLQLTHFA_					0	0	0			REV__ENST00000413230.6_1_12:63954294-63977630:-|nuORF	REV__ENST00000413230.6_1_12:63954294-63977630:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	521.208251953125	2	521.30821	1040.60187	-0.75962	-0.000396	-2.4977	-0.0013021	-3.2573	-0.0016981	521.30704199078	51.225	0.50571	51.978	51.663	52.169	0.75225					12	9	2	0	0	0	0.69507	1	19239	19239		13.906	0	1	1387700	+		59297	21478	43262	43595	57807	57807					0.0831892371959384
VLLRKREW	8	Unmodified	_VLLRKREW_					0	0	0		ENST00000535181.5_1_12:133448808-133463914:-|nuORF;ENST00000536196.1_1_12:133448709-133463914:-|nuORF;nc|ENSG00000072609|Q96EP1-5|CHFR;nc|ENSG00000072609|Q96EP1-3|CHFR;ENSG00000072609|ENST00000450056|CHFR;nc|ENSG00000072609|Q96EP1-4|CHFR;nc|ENSG00000072609|Q96EP1|CHFR	ENST00000535181.5_1_12:133448808-133463914:-|nuORF	ENST00000535181.5_1_12:133448808-133463914:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	367.6289978027344	3	367.229342	1098.6662	-0.12248	-4.4978E-05	-0.65086	-0.00023901	-0.77334	-0.00028399	367.22909728648466	38.286	0.35603	38.286	38.067	38.423	0					15	6	3	0	0	0	0.77741	1	13004	13004		4.3292	1.594	1	4888600			59298	1541	43263	43596	57808	57808					0.12081123596408361
VLLRPEAALVY	11	Unmodified	_VLLRPEAALVY_					0	0	0			REV__ENSG00000153107|ENST00000341068|ANAPC1	REV__ENSG00000153107|ENST00000341068|ANAPC1	MULTI-SECPEP	A375_MHC_IP_R2	2	622.2288818359375	2	622.374081	1242.73361	-0.55177	-0.00034341	0.030992	1.9289E-05	-0.52078	-0.00032412	622.373421425772	143	1.3113	143.03	142.64	143.95	0.030731					44	25	3	0	0	0	0.99526	1	56114	56114		6.7232	0.99131	1	6854300	+		59299	19827	43264	43597	57809	57809					0.12195109016693095
VLLRQRAAER	10	Unmodified	_VLLRQRAAER_					0	0	0			REV__nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3	REV__nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3	MULTI-SECPEP	A375_MHC_IP_R2	2	605.718994140625	2	606.370195	1210.72584	-0.40733	-0.00024699	-1.1877	-0.00072016	-1.595	-0.00096715	606.3692758125063	130.8	0.71275	131.01	130.91	131.62	0.2142					18	13	3	0	0	0	0.94667	1	51474	51474		1.1933	0	1	7222400	+		59300	22916	43265	43598	57810	57810					0.12890394539772387
VLLRTLRV	8	Unmodified	_VLLRTLRV_					0	0	0			REV__ENST00000446425.2_1_2:24222752-24222902:+|nuORF	REV__ENST00000446425.2_1_2:24222752-24222902:+|nuORF	MSMS	A375_MHC_IP_R1	1	485.21380615234375	2	485.332019	968.649485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.83	1	134.83	134.33	135.33	0								0	0	0	0.16876	1	51992	51992		11.114	4.7604	1		+		59301	24854	43266	43599	57811	57811					0.1639062271046896
VLLRWYQRRHD	11	Unmodified	_VLLRWYQRRHD_					0	0	0		ENST00000379847.3_9:32573035-32573095:-|nuORF	ENST00000379847.3_9:32573035-32573095:-|nuORF	ENST00000379847.3_9:32573035-32573095:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	515.1552734375	3	514.619781	1540.83751	-0.65433	-0.00033673	-0.72349	-0.00037232	-1.3778	-0.00070905	514.6192710039553	65.764	0.25443	65.764	65.616	65.871	0					6	4	2	0	0	0	1.0014	1	23831	23831		0	0	1	1232800			59302	11342	43267	43600	57812	57812					0.08872828896915053
VLLRYLHNF	9	Unmodified	_VLLRYLHNF_					0	0	0		ENST00000513980.5_1_17:47892935-47904861:+|nuORF;ENST00000512616.5_1_17:47892935-47904861:+|nuORF;nc|ENSG00000136504|O95251-3|KAT7;nc|ENSG00000136504|O95251-5|KAT7;nc|ENSG00000136504|O95251-2|KAT7;nc|ENSG00000136504|O95251-4|KAT7;ENSG00000136504|ENST00000259021|KAT7;ENST00000513075.1_1_17:47900608-47903534:+|nuORF;ENST00000503635.1_1_17:47903366-47904308:+|nuORF	ENST00000513980.5_1_17:47892935-47904861:+|nuORF	ENST00000513980.5_1_17:47892935-47904861:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	391.8417663574219	3	392.229231	1173.66586	-0.45119	-0.00017697	-0.8463	-0.00033194	-1.2975	-0.00050892	392.2291385143551	18.854	0.1105	19.457	19.423	19.533	0.60308					8	3	3	0	0	0	0.80101	1	5654	5654		2.7352	0.23671	1	70871000			59303	4795	43268	43601	57813	57813					0.08597703876557716
VLLSEILHL	9	Unmodified	_VLLSEILHL_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-4|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-SECPEP	A375_MHC_IP_R1	1	519.2227172851562	2	518.823692	1035.63283	-0.097894	-5.079E-05	-0.67817	-0.00035185	-0.77606	-0.00040264	518.8232405981804	127.21	0.60764	127.21	127.11	127.72	0					17	11	3	0	0	0	0.011242	1	48707	48707		106.85	39.81	1	40603000			59304	1600	43269	43602	57814	57814					0.11644077033861322
VLLSEILHL	9	Unmodified	_VLLSEILHL_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-4|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-SECPEP	A375_MHC_IP_R2	2	519.222412109375	2	518.823692	1035.63283	-0.68526	-0.00035553	0.28946	0.00015018	-0.3958	-0.00020535	518.8237406281186	126.92	0.4044	127.18	126.96	127.36	0.26593					12	7	2	0	0	0	0.04649	1	49695	49695		74.396	24.727	1	12762000			59305	1600	43269	43602	57815	57815					0.11644077033861322
VLLSGIIVFA	10	Unmodified	_VLLSGIIVFA_					0	0	0		tr|U7SN93|U7SN93_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01861PE=3SV=1	tr|U7SN93|U7SN93_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01861PE=3SV=1	tr|U7SN93|U7SN93_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01861PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	516.1555786132812	2	516.328611	1030.64267	-0.71282	-0.00036805	-0.098743	-5.0984E-05	-0.81157	-0.00041904	516.3284829729362	101.79	0.66046	102.56	102.26	102.92	0.76428					20	12	2	0	0	0	0.47386	1	38645	38645		47.749	9.1339	1	2972600			59306	29545	43270	43603	57816	57816					0.1285726503922433
VLLSLRITV	9	Unmodified	_VLLSLRITV_					0	0	0		ENSG00000183185|ENST00000472788|GABRR3	ENSG00000183185|ENST00000472788|GABRR3	ENSG00000183185|ENST00000472788|GABRR3	MULTI-SECPEP	A375_MHC_IP_R1	1	507.1294250488281	2	507.33951	1012.66447	-0.53916	-0.00027354	-0.14114	-7.1608E-05	-0.6803	-0.00034514	507.339348598556	41.038	0.25159	41.038	40.913	41.164	0					6	4	2	0	0	0	0.80005	1	14179	14179		4.756	0	1	1752600			59307	8473	43271	43604	57817	57817					0.15864069787789958
VLLSTIHEL	9	Unmodified	_VLLSTIHEL_					0	0	0		ENSG00000163634|ENST00000295899|THOC7	ENSG00000163634|ENST00000295899|THOC7	ENSG00000163634|ENST00000295899|THOC7	MULTI-SECPEP	A375_MHC_IP_R1	1	513.205810546875	2	512.8055	1023.59645	-0.51354	-0.00026335	0.080089	4.107E-05	-0.43346	-0.00022228	512.8056476764705	79.853	0.51151	79.853	79.625	80.136	0					14	9	2	0	0	0	0.10969	1	29181	29181		57.471	57.471	1	1884200			59308	6697	43272	43605	57818	57818					0.08559200137142398
VLLSTIHEL	9	Unmodified	_VLLSTIHEL_					0	0	0		ENSG00000163634|ENST00000295899|THOC7	ENSG00000163634|ENST00000295899|THOC7	ENSG00000163634|ENST00000295899|THOC7	MULTI-SECPEP	A375_MHC_IP_R2	2	513.20556640625	2	512.8055	1023.59645	-0.67434	-0.00034581	0.11509	5.9017E-05	-0.55925	-0.00028679	512.8056017244842	78.906	0.50903	79.651	79.387	79.896	0.74474					14	9	2	0	0	0	0.16229	1	29959	29959		48.346	25.197	1	1994700			59309	6697	43272	43605	57819	57819					0.08559200137142398
VLLTCVVLM	9	Unmodified	_VLLTCVVLM_					0	0	0		ENST00000477791.5_1_2:47134810-47142912:-|nuORF	ENST00000477791.5_1_2:47134810-47142912:-|nuORF	ENST00000477791.5_1_2:47134810-47142912:-|nuORF	MSMS	A375_MHC_IP_R1	1	495.7232666015625	2	495.789949	989.565346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.619	1	83.619	83.119	84.119	0								0	0	0	0.15427	1	30602	30602		14.582	0	1				59310	12448	43273	43606	57820	57820					0.0701458750703523
VLLTGLHAV	9	Unmodified	_VLLTGLHAV_					0	0	0		ENST00000477675.1_1_22:22055420-22058252:-|nuORF;ENSG00000100027|ENST00000339468|YPEL1;nc|ENSG00000090238|P61236|YPEL3;ENSG00000175155|ENST00000312655|YPEL2;ENST00000565479.5_1_16:30104033-30107516:-|nuORF;ENSG00000090238|ENST00000398841|YPEL3	ENST00000477675.1_1_22:22055420-22058252:-|nuORF	ENST00000477675.1_1_22:22055420-22058252:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	462.1898193359375	2	461.789653	921.564752	-0.23933	-0.00011052	0.084721	3.9123E-05	-0.1546	-7.1395E-05	461.7896979711282	73.361	0.55797	73.361	73.132	73.69	0					16	10	2	0	0	0	0.3243	1	26735	26735		44.407	8.3628	1	2769400			59311	2102	43274	43607	57821	57821					0.10083252173853907
VLLTGLHAV	9	Unmodified	_VLLTGLHAV_					0	0	0		ENST00000477675.1_1_22:22055420-22058252:-|nuORF;ENSG00000100027|ENST00000339468|YPEL1;nc|ENSG00000090238|P61236|YPEL3;ENSG00000175155|ENST00000312655|YPEL2;ENST00000565479.5_1_16:30104033-30107516:-|nuORF;ENSG00000090238|ENST00000398841|YPEL3	ENST00000477675.1_1_22:22055420-22058252:-|nuORF	ENST00000477675.1_1_22:22055420-22058252:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	462.1895751953125	2	461.789653	921.564752	-0.65261	-0.00030137	-0.29485	-0.00013616	-0.94746	-0.00043753	461.7896518831624	72.348	0.65831	73.084	72.771	73.429	0.7354					23	12	3	0	0	0	0.3243	1	27481	27481		44.407	8.3628	1	3362400			59312	2102	43274	43607	57822	57822					0.10083252173853907
VLLTGLTEV	9	Unmodified	_VLLTGLTEV_					0	0	0		nc|ENSG00000033867|Q9Y6M7-11|SLC4A7;nc|ENSG00000033867|Q9Y6M7-14|SLC4A7;nc|ENSG00000033867|Q9Y6M7-10|SLC4A7;nc|ENSG00000033867|Q9Y6M7-4|SLC4A7;nc|ENSG00000033867|Q9Y6M7-3|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;ENSG00000033867|ENST00000454389|SLC4A7	nc|ENSG00000033867|Q9Y6M7-11|SLC4A7	nc|ENSG00000033867|Q9Y6M7-11|SLC4A7	MULTI-MSMS	A375_MHC_IP_R1	1	944.90283203125	1	944.566275	943.558998	0.30887	0.00029175	0.4656	0.00043979	0.77447	0.00073154	944.566606034888	112.31	0.45766	112.31	112.03	112.48	0					18	8	3	0	0	0	0.0014061	1	41209	41209		149.99	37.401	1	4979300			59313	1126	43275	43608	57823	57823					0.08496108871520391
VLLTGLTEV	9	Unmodified	_VLLTGLTEV_					0	0	0		nc|ENSG00000033867|Q9Y6M7-11|SLC4A7;nc|ENSG00000033867|Q9Y6M7-14|SLC4A7;nc|ENSG00000033867|Q9Y6M7-10|SLC4A7;nc|ENSG00000033867|Q9Y6M7-4|SLC4A7;nc|ENSG00000033867|Q9Y6M7-3|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;ENSG00000033867|ENST00000454389|SLC4A7	nc|ENSG00000033867|Q9Y6M7-11|SLC4A7	nc|ENSG00000033867|Q9Y6M7-11|SLC4A7	MULTI-MATCH	A375_MHC_IP_R2	2		1	944.566275	943.558998	-0.010667	-1.0076E-05	-0.010246	-9.6777E-06	-0.020913	-1.9753E-05	944.5662500177408	111.4	0.51529	112.14	111.85	112.37	0.73692	-0.086884	-0.00024033	NaN	149.99	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8104900			59314	1126	43275	43608							0.08496108871520391
VLLTLKLDKKE	11	Unmodified	_VLLTLKLDKKE_					0	0	0			REV__nc|ENSG00000044459|Q9NXG0|CNTLN	REV__nc|ENSG00000044459|Q9NXG0|CNTLN	MULTI-MSMS	A375_MHC_IP_R2	2	650.8135375976562	2	650.415946	1298.81734	-0.54225	-0.00035269	-0.10188	-6.6266E-05	-0.64413	-0.00041895	650.4156320890447	143.49	2.4214	143.52	142.52	144.95	0.024414					73	50	2	0	0	0	0.73906	1	56430	56430		0.26902	0	1	655460	+		59315	16355	43276	43609	57824	57824					0.17988220393749543
VLLVALAPATL	11	Unmodified	_VLLVALAPATL_					0	0	0		TNN|p.S23L|2|0.87|ENSG00000120332|chr1:175077486-175077486|C/T|missense_variant	TNN|p.S23L|2|0.87|ENSG00000120332|chr1:175077486-175077486|C/T|missense_variant	TNN|p.S23L|2|0.87|ENSG00000120332|chr1:175077486-175077486|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	541.1748657226562	2	540.854993	1079.69543	-0.83727	-0.00045284	-0.99042	-0.00053568	-1.8277	-0.00098852	541.3572366015687	91.073	0.20215	91.073	90.896	91.098	0					5	3	2	0	0	0	0.99109	1	33444	33444		3.2813	1.6287	1	470400			59316	29372	43277	43610	57825	57825					0.15877223102029348
VLLVHGWEL	9	Unmodified	_VLLVHGWEL_					0	0	0			REV__ENSG00000183208|ENST00000329600|GDPGP1	REV__ENSG00000183208|ENST00000329600|GDPGP1	MULTI-SECPEP	A375_MHC_IP_R2	2	532.6453857421875	2	533.30821	1064.60187	-0.55358	-0.00029523	0.15943	8.5025E-05	-0.39415	-0.00021021	533.3080881980985	115.18	0.56103	115.87	115.58	116.14	0.68999					22	10	3	0	0	0	0.69504	1	43440	43440		12.532	0	1	2359500	+		59317	21740	43278	43611	57826	57826					0.07214923719629951
VLLVLFMEI	9	Unmodified	_VLLVLFMEI_					0	0	0			REV__nc|ENSG00000205221|Q6UXI7-2|VIT	REV__nc|ENSG00000205221|Q6UXI7-2|VIT	MULTI-SECPEP	A375_MHC_IP_R1	1	539.2245483398438	2	538.824846	1075.63514	-0.97389	-0.00052475	0.69674	0.00037542	-0.27715	-0.00014934	538.8252537104171	137.45	0.25792	137.45	137.28	137.54	0					12	4	4	0	0	0	0.79683	1	52921	52921		2.3027	0	1	983960	+		59318	22564	43279	43612	57827	57827					0.10034789447308867
VLLVSVSGSV	10	Unmodified	_VLLVSVSGSV_					0	0	0		nc|ENSG00000116106|P54764-2|EPHA4;ENSG00000116106|ENST00000281821|EPHA4	nc|ENSG00000116106|P54764-2|EPHA4	nc|ENSG00000116106|P54764-2|EPHA4	MULTI-SECPEP	A375_MHC_IP_R1	1	480.692138671875	2	480.292225	958.569897	-0.22125	-0.00010627	-0.2118	-0.00010173	-0.43306	-0.00020799	480.2920564126394	42.701	0.45549	42.701	42.537	42.993	0					12	8	2	0	0	0	0.32951	1	14824	14824		46.021	16.939	1	3031600			59319	3368	43280	43613	57828	57828					0.08895511245827947
VLLVSVSGSV	10	Unmodified	_VLLVSVSGSV_					0	0	0		nc|ENSG00000116106|P54764-2|EPHA4;ENSG00000116106|ENST00000281821|EPHA4	nc|ENSG00000116106|P54764-2|EPHA4	nc|ENSG00000116106|P54764-2|EPHA4	MULTI-SECPEP	A375_MHC_IP_R2	2	480.6916809082031	2	480.292225	958.569897	-0.53776	-0.00025828	-0.12398	-5.9546E-05	-0.66174	-0.00031783	480.29208048114805	41.858	0.30676	42.633	42.504	42.811	0.77451					10	5	2	0	0	0	0.32951	1	15565	15565		46.021	0	1	2572000			59320	3368	43280	43613	57829	57829					0.08895511245827947
VLMENIVYL	9	Unmodified	_VLMENIVYL_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;nc|ENSG00000133706|Q9P2J5-3|LARS1	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	A375_MHC_IP_R1	1	547.22265625	2	547.301736	1092.58892	-0.41966	-0.00022968	-1.2246	-0.00067025	-1.6443	-0.00089993	547.3010506639879	128.41	0.25369	128.41	128.23	128.48	0					12	4	4	0	0	0	0.4867	1	49241	49241		20.454	3.3671	1	14879000			59321	4525	43281	43614	57830	57830					0.0463272454521757
VLMENIVYL	9	Unmodified	_VLMENIVYL_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;nc|ENSG00000133706|Q9P2J5-3|LARS1	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	A375_MHC_IP_R2	2	547.701171875	2	547.301736	1092.58892	-0.8522	-0.00046641	-1.7607	-0.00096366	-2.6129	-0.0014301	547.3007358966811	128.06	0.40683	128.33	128.17	128.58	0.26593					18	7	3	0	0	0	0.091096	1	50266	50266		52.268	6.5687	1	19315000			59322	4525	43281	43614	57831	57831					0.0463272454521757
VLMKALEYL	9	Unmodified	_VLMKALEYL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	A375_MHC_IP_R1	1	540.71142578125	2	540.312103	1078.60965	-0.60025	-0.00032432	-0.1765	-9.5363E-05	-0.77675	-0.00041969	540.3118146084976	103.21	0.50878	103.21	102.91	103.42	0					14	9	2	0	0	0	0.070818	1	37922	37922		56.177	2.6015	1	2789200			59323	7941	43282	43615	57832	57832					0.07349314924863393
VLMKDVQEI	9	Oxidation (M)	_VLM(Oxidation (M))KDVQEI_		VLM(1)KDVQEI		VLM(73)KDVQEI	0	0	1		ENSG00000139233|ENST00000266604|LLPH	ENSG00000139233|ENST00000266604|LLPH	ENSG00000139233|ENST00000266604|LLPH	MULTI-SECPEP	A375_MHC_IP_R1	1	545.1642456054688	2	545.794275	1089.574	-0.67767	-0.00036987	-2.3333	-0.0012735	-3.011	-0.0016434	545.7942870008694	37.877	0.61153	37.877	37.607	38.218	0					19	11	2	0	0	0	0.10362	1	12731	12731		72.968	25.219	1	2340400			59324	5063	43283	43616	57833	57833		269			0.03279232677186883
VLMKDVQEI	9	Oxidation (M)	_VLM(Oxidation (M))KDVQEI_		VLM(1)KDVQEI		VLM(58)KDVQEI	0	0	1		ENSG00000139233|ENST00000266604|LLPH	ENSG00000139233|ENST00000266604|LLPH	ENSG00000139233|ENST00000266604|LLPH	MULTI-SECPEP	A375_MHC_IP_R2	2	546.15234375	2	545.794275	1089.574	-1.3873	-0.00075718	-1.474	-0.00080451	-2.8613	-0.0015617	545.7943675527064	37.156	1.1705	37.926	37.207	38.378	0.7709					29	22	2	0	0	0	0.13208	1	13626	13626		57.722	12.022	1	3599500			59325	5063	43283	43616	57834	57834		269			0.03279232677186883
VLMLMKITKKK	11	Unmodified	_VLMLMKITKKK_					0	0	0			REV__nc|ENSG00000123901|Q9NYM4-2|GPR83	REV__nc|ENSG00000123901|Q9NYM4-2|GPR83	MULTI-MSMS	A375_MHC_IP_R1	1	1333.24609375	1	1332.84695	1331.83967	-0.36813	-0.00049067	-0.34545	-0.00046043	-0.71358	-0.00095109	1332.8461053049352	149.32	1.8194	149.32	147.96	149.78	0					143	42	4	0	0	0	0.73934	2	56770	56770;56985		0	0	1	988990	+		59326	18262	43284	43617	57835;57836	57835					0.1870240526611724
VLMLMKITKKK	11	Unmodified	_VLMLMKITKKK_					0	0	0			REV__nc|ENSG00000123901|Q9NYM4-2|GPR83	REV__nc|ENSG00000123901|Q9NYM4-2|GPR83	MULTI-SECPEP	A375_MHC_IP_R1	1	1333.24609375	1	1332.84695	1331.83967	-0.36813	-0.00049067	-0.34545	-0.00046043	-0.71358	-0.00095109	1332.8461053049352	149.32	1.8194	149.32	147.96	149.78	0					143	42	4	0	0	0	1.0015	1	56770	56770		0	0	1	988990	+		59327	18262	43284	43617	57837	57837					0.1870240526611724
VLMNQPPQI	9	Oxidation (M)	_VLM(Oxidation (M))NQPPQI_		VLM(1)NQPPQI		VLM(74)NQPPQI	0	0	1		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.G674Wfs*6|1|0.27|ENSG00000114867|chr3:184323170-184323171|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-SECPEP	A375_MHC_IP_R1	1	528.68115234375	2	528.281334	1054.54812	-0.5304	-0.0002802	-0.069526	-3.6729E-05	-0.59993	-0.00031693	528.2812338355927	57.653	1.2182	57.653	57.364	58.582	0					27	23	2	0	0	0	0.033126	1	20696	20696		74.423	23.008	1	2115900			59328	3254	43285	43618	57838	57838		156			0.023023832255830712
VLMTEDIKL	9	Unmodified	_VLMTEDIKL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-SECPEP	A375_MHC_IP_R1	1	531.2470703125	2	531.299193	1060.58383	-0.70715	-0.00037571	0.058737	3.1207E-05	-0.64842	-0.0003445	531.2981566600413	83.856	0.91152	83.856	83.38	84.292	0					66	17	5	0	0	0	0.070665	1	30720	30720		69.105	29.148	1	15285000			59329	3254	43286	43619	57839	57839					0.05596420682581993
VLMTEDIKL	9	Unmodified	_VLMTEDIKL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-SECPEP	A375_MHC_IP_R2	2	531.697998046875	2	531.299193	1060.58383	-0.65177	-0.00034628	-0.26337	-0.00013993	-0.91514	-0.00048621	531.2981456614648	83.029	1.0631	83.768	83.242	84.305	0.73962					58	20	4	0	0	0	0.13208	1	31554	31554		66.457	22.598	1	13377000			59330	3254	43286	43619	57840	57840					0.05596420682581993
VLMTEDIKL	9	Oxidation (M)	_VLM(Oxidation (M))TEDIKL_		VLM(1)TEDIKL		VLM(100)TEDIKL	0	0	1		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-SECPEP	A375_MHC_IP_R1	1	539.6962890625	2	539.29665	1076.57875	-0.92538	-0.00049906	-0.40119	-0.00021636	-1.3266	-0.00071542	539.2968398763587	67.073	1.6314	67.073	65.972	67.603	0					59	31	4	0	0	0	0.022401	1	24301	24301		99.755	43.578	1	6597800			59331	3254	43286	43620	57841	57841		157			0.04352116819973162
VLMTEDIKL	9	Oxidation (M)	_VLM(Oxidation (M))TEDIKL_		VLM(1)TEDIKL		VLM(83)TEDIKL	0	0	1		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-SECPEP	A375_MHC_IP_R2	2	539.2024536132812	2	539.29665	1076.57875	-1.0454	-0.0005638	-0.70313	-0.00037919	-1.7486	-0.000943	539.2967147164744	65.743	0.45737	66.481	66.222	66.68	0.73811					16	8	2	0	0	0	0.061442	1	24891	24891		82.529	32.596	1	6658800			59332	3254	43286	43620	57842	57842		157			0.04352116819973162
VLMTEDIKL	9	Oxidation (M)	_VLM(Oxidation (M))TEDIKL_		VLM(1)TEDIKL		VLM(83)TEDIKL	0	0	1		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-SECPEP	A375_MHC_IP_R2	2	539.2024536132812	2	539.29665	1076.57875	-1.023	-0.00055169	0.28546	0.00015395	-0.73752	-0.00039774	539.2970068804625	66.221	1.1726	66.959	66.222	67.395	0.73811					39	22	3	0	0	0	0.061442	1	24891	24891		82.529	32.596	1	8774600			59333	3254	43286	43620	57843	57843		157			0.04352116819973162
VLNAVRDYHIG	11	Unmodified	_VLNAVRDYHIG_					0	0	0		ENSG00000215305|ENST00000380445|VPS16;ENST00000380443.5_1_20:2843179-2847217:+|nuORF	ENSG00000215305|ENST00000380445|VPS16	ENSG00000215305|ENST00000380445|VPS16	MSMS	A375_MHC_IP_R2	2	628.8363037109375	2	628.840936	1255.66732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.581	1	90.313	89.813	90.813	0.7318								0	0	0	0.16051	1	34089	34089		13.906	0	1				59334	9643	43287	43621	57844	57844					0.049712931746626055
VLNDVFMWFFP	11	Unmodified	_VLNDVFMWFFP_					0	0	0			REV__ENSG00000142182|ENST00000628202|DNMT3L	REV__ENSG00000142182|ENST00000628202|DNMT3L	MULTI-SECPEP	A375_MHC_IP_R2	2	708.245361328125	2	707.846842	1413.67913	-0.94741	-0.00067062	-0.02827	-2.0011E-05	-0.97568	-0.00069063	707.8461059207135	62.108	0.50691	62.85	62.521	63.028	0.74263					18	9	3	0	0	0	0.98591	1	23535	23535		5.7319	0	1	1927700	+		59335	19297	43288	43622	57845	57845					-0.011162261263734763
VLNENNVP	8	Unmodified	_VLNENNVP_					0	0	0		ENSG00000115109|ENST00000263713|EPB41L5;nc|ENSG00000115109|Q9HCM4-3|EPB41L5;nc|ENSG00000115109|Q9HCM4-4|EPB41L5	ENSG00000115109|ENST00000263713|EPB41L5	ENSG00000115109|ENST00000263713|EPB41L5	MULTI-MSMS	A375_MHC_IP_R1	1	450.1351623535156	2	449.735074	897.455596	-0.12036	-5.413E-05	-0.33508	-0.0001507	-0.45544	-0.00020483	449.7350919558752	46.259	0.55415	46.259	45.941	46.495	0					15	10	2	0	0	0	0.72761	1	16256	16256		26.341	3.1929	1	1564300			59336	3270	43289	43623	57846	57846					0.0027662148371518924
VLNENNVP	8	Unmodified	_VLNENNVP_					0	0	0		ENSG00000115109|ENST00000263713|EPB41L5;nc|ENSG00000115109|Q9HCM4-3|EPB41L5;nc|ENSG00000115109|Q9HCM4-4|EPB41L5	ENSG00000115109|ENST00000263713|EPB41L5	ENSG00000115109|ENST00000263713|EPB41L5	MULTI-MATCH	A375_MHC_IP_R2	2		2	449.735074	897.455596	-0.32715	-0.00014713	-0.023204	-1.0435E-05	-0.35036	-0.00015757	449.7350279041576	45.483	0.50446	46.248	46.048	46.552	0.76519	-0.0051676	5.7114E-05	NaN	26.341	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	905770			59337	3270	43289	43623							0.0027662148371518924
VLNEYFHNV	9	Unmodified	_VLNEYFHNV_					0	0	0		nc|ENSG00000042753|P53680-2|AP2S1;ENSG00000042753|ENST00000263270|AP2S1	nc|ENSG00000042753|P53680-2|AP2S1	nc|ENSG00000042753|P53680-2|AP2S1	MULTI-SECPEP	A375_MHC_IP_R1	1	568.182861328125	2	567.782556	1133.55056	-0.44401	-0.0002521	0.51016	0.00028966	0.066145	3.7556E-05	567.782602130554	65.19	1.1711	65.19	64.597	65.768	0					57	22	4	0	0	0	0.011451	1	23579	23579		107.19	69.011	1	11195000			59338	1176	43290	43624	57847	57847					-0.01087445045095592
VLNEYFHNV	9	Unmodified	_VLNEYFHNV_					0	0	0		nc|ENSG00000042753|P53680-2|AP2S1;ENSG00000042753|ENST00000263270|AP2S1	nc|ENSG00000042753|P53680-2|AP2S1	nc|ENSG00000042753|P53680-2|AP2S1	MULTI-SECPEP	A375_MHC_IP_R2	2	568.1822509765625	2	567.782556	1133.55056	-0.30125	-0.00017105	-0.33308	-0.00018912	-0.63433	-0.00036016	567.7822505474422	64.462	1.019	65.202	64.85	65.87	0.74023					30	19	2	0	0	0	0.019499	1	24414	24414		103.42	57.72	1	10547000			59339	1176	43290	43624	57848	57848					-0.01087445045095592
VLNIDDYIY	9	Unmodified	_VLNIDDYIY_					0	0	0		CPO|p.G154D|1|0.29|ENSG00000144410|chr2:206959719-206959719|G/A|missense_variant	CPO|p.G154D|1|0.29|ENSG00000144410|chr2:206959719-206959719|G/A|missense_variant	CPO|p.G154D|1|0.29|ENSG00000144410|chr2:206959719-206959719|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	564.7586059570312	2	564.284597	1126.55464	-0.34971	-0.00019734	0.037622	2.123E-05	-0.31209	-0.00017611	564.2845617463428	86.625	1.0176	87.358	86.845	87.863	0.73301					51	19	4	0	0	0	0.60101	1	32829	32829		14.838	0.93222	1	15465000			59340	648	43291	43625	57849	57849					-0.003574003420453664
VLNKIREF	8	Unmodified	_VLNKIREF_					0	0	0		ENSG00000254469|ENST00000679412|XNDC1N;ENST00000528511.6_2_11:71595487-71639632:-|nuORF	ENSG00000254469|ENST00000679412|XNDC1N	ENSG00000254469|ENST00000679412|XNDC1N	MSMS	A375_MHC_IP_R1	1	509.7262268066406	2	509.805834	1017.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.89	1	118.89	118.39	119.39	0								0	0	0	0.16876	1	43860	43860		12.532	0.89125	1				59341	9876	43292	43626	57850	57850					0.08902039576832976
VLNKRSTEP	9	Unmodified	_VLNKRSTEP_					0	0	0			REV__ESRP2|p.A144T|1|0.45|ENSG00000103067|chr16:68234005-68234005|C/T|missense_variant	REV__ESRP2|p.A144T|1|0.45|ENSG00000103067|chr16:68234005-68234005|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	522.69677734375	2	522.29583	1042.57711	-0.30341	-0.00015847	0.055921	2.9207E-05	-0.24749	-0.00012926	522.2954732856377	127.95	1.5219	127.95	127.57	129.09	0					59	29	3	0	0	0	0.73415	1	49033	49033		3.9444	0	1	52604000	+		59342	26594	43293	43627	57851	57851					0.057522438462456194
VLNKWQMNLY	10	Unmodified	_VLNKWQMNLY_					0	0	0		DDX1|p.P95L|1|0.34|ENSG00000079785|chr2:15599693-15599693|C/T|missense_variant	DDX1|p.P95L|1|0.34|ENSG00000079785|chr2:15599693-15599693|C/T|missense_variant	DDX1|p.P95L|1|0.34|ENSG00000079785|chr2:15599693-15599693|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	655.2426147460938	2	654.842091	1307.66963	-0.46252	-0.00030288	1.8573	0.0012162	1.3947	0.00091334	654.8434699436275	75.947	0.35368	75.947	75.764	76.117	0					16	6	3	0	0	0	0.91556	1	27696	27696		14.838	0	1	2305900			59343	723	43294	43628	57852	57852					0.028100055881168373
VLNPEELLS	9	Unmodified	_VLNPEELLS_					0	0	0			REV__tr|U7T607|U7T607_FUSNUDUF4261domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00327PE=4SV=1	REV__tr|U7T607|U7T607_FUSNUDUF4261domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00327PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	506.99090576171875	2	507.279315	1012.54408	-0.79528	-0.00040343	1.4599	0.00074059	0.66464	0.00033716	507.2802821838834	40.282	0.35551	41.056	40.777	41.133	0.77451					9	6	2	0	0	0	0.71541	1	14902	14902		11.64	0	1	1709600	+		59344	28850	43295	43629	57853	57853					0.03830617003529824
VLNPETTVV	9	Unmodified	_VLNPETTVV_					0	0	0		ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-SECPEP	A375_MHC_IP_R1	1	486.67376708984375	2	486.274032	970.533512	-0.04936	-2.4002E-05	-0.48807	-0.00023734	-0.53743	-0.00026134	486.2736294120524	68.984	0.96487	68.984	68.361	69.326	0					40	18	3	0	0	0	0.13064	1	24977	24977		65.235	10.461	1	7936100			59345	5039	43296	43630	57854	57854					0.0470663434908829
VLNPETTVV	9	Unmodified	_VLNPETTVV_					0	0	0		ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-SECPEP	A375_MHC_IP_R2	2	486.6734924316406	2	486.274032	970.533512	-0.49386	-0.00024015	-0.10905	-5.3027E-05	-0.6029	-0.00029318	486.2739558500416	68.208	0.86296	68.943	68.56	69.423	0.73511					33	16	3	0	0	0	0.13064	1	25792	25792		65.235	10.461	1	16561000			59346	5039	43296	43630	57855	57855					0.0470663434908829
VLNRSIHTAWL	11	Unmodified	_VLNRSIHTAWL_					0	0	0		ENSG00000172331|ENST00000344924|BPGM	ENSG00000172331|ENST00000344924|BPGM	ENSG00000172331|ENST00000344924|BPGM	MULTI-SECPEP	A375_MHC_IP_R1	1	655.2686767578125	2	655.372404	1308.73025	-0.40178	-0.00026331	-0.83444	-0.00054687	-1.2362	-0.00081018	655.3722459166074	103.47	0.40815	103.47	103.22	103.63	0					12	7	2	0	0	0	0.99507	1	37973	37973		7.609	6.5375	1	1047800			59347	7700	43297	43631	57856	57856					0.08823858962705344
VLNRSKRWK	9	Unmodified	_VLNRSKRWK_					0	0	0		TTLL4|p.R377K|1|0.22|ENSG00000135912|chr2:218738806-218738806|G/A|missense_variant	TTLL4|p.R377K|1|0.22|ENSG00000135912|chr2:218738806-218738806|G/A|missense_variant	TTLL4|p.R377K|1|0.22|ENSG00000135912|chr2:218738806-218738806|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	594.2606201171875	2	593.862006	1185.70946	-0.72544	-0.00043081	-0.74755	-0.00044394	-1.473	-0.00087475	593.8617571070139	145.19	0.42802	145.19	144.92	145.35	0					23	14	2	0	0	0	0.81779	1	55679	55679		0.52476	0	1	232450			59348	30093	43298	43632	57857	57857					0.12403313373670244
VLNRSNKI	8	Unmodified	_VLNRSNKI_					0	0	0		tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1	tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1	tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	472.68798828125	2	472.287808	942.561064	-0.57964	-0.00027376	-0.13757	-6.4974E-05	-0.71721	-0.00033873	472.2877271991767	130.62	1.7281	130.83	130.1	131.82	0.2142					77	33	4	0	0	0	0.972	1	51568	51568		5.2307	0.47466	1	149000000			59349	29672	43299	43633	57858	57858					0.08748582399982752
VLNTVKMYN	9	Unmodified	_VLNTVKMYN_					0	0	0			REV__tr|U7SNE8|U7SNE8_FUSNUImpactN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01911PE=3SV=1	REV__tr|U7SNE8|U7SNE8_FUSNUImpactN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01911PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	361.5949401855469	3	361.195198	1080.56377	-0.20615	-7.4461E-05	0.052499	1.8962E-05	-0.15365	-5.5499E-05	361.19518281722594	38.143	0.50898	38.143	37.862	38.371	0					18	9	3	0	0	0	0.63811	1	12936	12936		8.1555	0	1	4375400	+		59350	28324	43300	43634	57859	57859					0.026706697426334358
VLNVHGRRVT	10	Unmodified	_VLNVHGRRVT_					0	0	0		ENST00000268616.8_1_16:87441547-87441679:-|nuORF	ENST00000268616.8_1_16:87441547-87441679:-|nuORF	ENST00000268616.8_1_16:87441547-87441679:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	576.2427978515625	2	575.843813	1149.67307	-0.39792	-0.00022914	-0.85066	-0.00048985	-1.2486	-0.00071899	575.8432252643014	130	0.86282	130	129.7	130.57	0					22	12	2	0	0	0	0.94727	1	49903	49903		1.3295	1.3295	1	55313000			59351	10362	43301	43635	57860	57860					0.10422436476960684
VLNVHGRRVT	10	Unmodified	_VLNVHGRRVT_					0	0	0		ENST00000268616.8_1_16:87441547-87441679:-|nuORF	ENST00000268616.8_1_16:87441547-87441679:-|nuORF	ENST00000268616.8_1_16:87441547-87441679:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	575.843813	1149.67307	-0.21122	-0.00012163	-1.759	-0.0010129	-1.9702	-0.0011345	575.8425992132247	129.8	0.9606	130.01	129.74	130.7	0.21419	0.00452	-0.00044892	NaN	1.3295	47	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38607000			59352	10362	43301	43635							0.10422436476960684
VLNVHQRV	8	Unmodified	_VLNVHQRV_					0	0	0		ENSG00000062370|ENST00000354340|ZNF112;nc|ENSG00000062370|Q9UJU3|ZNF112	ENSG00000062370|ENST00000354340|ZNF112	ENSG00000062370|ENST00000354340|ZNF112	MULTI-SECPEP	A375_MHC_IP_R2	2	483.187744140625	2	482.787976	963.561398	-0.39003	-0.0001883	0.30775	0.00014858	-0.082278	-3.9723E-05	482.7879764347084	141	0.25734	141.04	140.91	141.17	0.04216					7	4	2	0	0	0	0.972	1	55187	55187		0.69038	0	1	977100			59353	1328	43302	43636	57861	57861					0.07816002119841414
VLNVHQRV	8	Unmodified	_VLNVHQRV_					0	0	0		ENSG00000062370|ENST00000354340|ZNF112;nc|ENSG00000062370|Q9UJU3|ZNF112	ENSG00000062370|ENST00000354340|ZNF112	ENSG00000062370|ENST00000354340|ZNF112	MULTI-MATCH	A375_MHC_IP_R1	1		2	482.787976	963.561398	-0.68937	-0.00033282	0.21432	0.00010347	-0.47506	-0.00022935	482.7877311161965	141.02	0.25717	141.02	140.8	141.06	0	-0.010475	-6.1563E-05	NaN	0.69038	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	704200			59354	1328	43302	43636							0.07816002119841414
VLPASGLV	8	Unmodified	_VLPASGLV_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1;ENST00000527224.1_1_11:65837957-65984297:+|nuORF	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	MULTI-MSMS	A375_MHC_IP_R2	2	378.6389465332031	2	378.236722	754.45889	-0.027613	-1.0444E-05	2.1475	0.00081226	2.1199	0.00080181	378.23877902647035	66.323	1.3763	67.06	66.271	67.648	0.73631					53	26	3	0	0	0	0.77686	1	25134	25134		6.3541	0	1	3546000			59355	7935	43303	43637	57862	57862					0.0718391632839257
VLPDDLSGV	9	Unmodified	_VLPDDLSGV_					0	0	0		nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2	nc|ENSG00000114353|P04899-6|GNAI2	nc|ENSG00000114353|P04899-6|GNAI2	MULTI-MSMS	A375_MHC_IP_R1	1	914.8831176757812	1	914.482939	913.475663	-0.31622	-0.00028917	0.034674	3.1709E-05	-0.28154	-0.00025747	914.4828989941815	84.991	1.2734	84.991	84.545	85.819	0					52	24	3	0	0	0	0.01574	1	31119	31119		88.904	31.432	1	11399000			59356	3213	43304	43638	57863	57863					0.015463724236838061
VLPDDLSGV	9	Unmodified	_VLPDDLSGV_					0	0	0		nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2	nc|ENSG00000114353|P04899-6|GNAI2	nc|ENSG00000114353|P04899-6|GNAI2	MULTI-MATCH	A375_MHC_IP_R2	2		1	914.482939	913.475663	-0.25998	-0.00023774	-0.010176	-9.3058E-06	-0.27015	-0.00024705	914.4827919250771	84.38	1.0178	85.116	84.659	85.677	0.73601	0.062848	-2.6372E-05	NaN	88.904	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12602000			59357	3213	43304	43638							0.015463724236838061
VLPFDPPQ	8	Unmodified	_VLPFDPPQ_					0	0	0		ENST00000484202.2_1_1:249104790-249105009:-|nuORF	ENST00000484202.2_1_1:249104790-249105009:-|nuORF	ENST00000484202.2_1_1:249104790-249105009:-|nuORF	MSMS	A375_MHC_IP_R2	2	456.81072998046875	2	456.744911	911.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.2437	1	1.7142	1.2142	2.2142	0.47044								0	0	0	0.16876	1	409	409		0.79363	0	1				59358	12557	43305	43639	57864	57864					0.01598997494465948
VLPGFRLHRLP	11	Unmodified	_VLPGFRLHRLP_					0	0	0		ENST00000571710.5_1_17:1945525-1946395:+|nuORF	ENST00000571710.5_1_17:1945525-1946395:+|nuORF	ENST00000571710.5_1_17:1945525-1946395:+|nuORF	MSMS	A375_MHC_IP_R1	1	652.9949340820312	2	652.901131	1303.78771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.21	1	112.21	111.71	112.71	0								0	0	0	0.16334	1	41129	41129		1.3295	0	1				59359	13611	43306	43640	57865	57865					0.14796745958938118
VLPGLIHKV	9	Unmodified	_VLPGLIHKV_					0	0	0		ENSG00000104522|ENST00000425753|GFUS;ENST00000531473.5_1_8:144695082-144696778:-|nuORF	ENSG00000104522|ENST00000425753|GFUS	ENSG00000104522|ENST00000425753|GFUS	MULTI-SECPEP	A375_MHC_IP_R1	1	488.46942138671875	2	488.32112	974.627687	0.13632	6.6568E-05	-0.295	-0.00014405	-0.15868	-7.7485E-05	488.3208652775807	49.398	0.30504	49.398	49.235	49.54	0					9	5	2	0	0	0	0.65246	1	17495	17495		15.847	6.4997	1	1368100			59360	2518	43307	43641	57866	57866					0.13935817961896646
VLPLGRWVRLQ	11	Unmodified	_VLPLGRWVRLQ_					0	0	0		ENST00000487982.5_1_7:65541068-65551857:+|nuORF	ENST00000487982.5_1_7:65541068-65551857:+|nuORF	ENST00000487982.5_1_7:65541068-65551857:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	446.6783447265625	3	446.278585	1335.81392	-0.26496	-0.00011825	-0.49058	-0.00021893	-0.75554	-0.00033718	446.2782772232174	84.392	0.55753	84.392	84.191	84.749	0					23	10	3	0	0	0	0.73439	1	30925	30925		4.7159	0.30977	1	3773500			59361	12608	43308	43642	57867	57867					0.15945015130409956
VLPLIGKVLKL	11	Unmodified	_VLPLIGKVLKL_					0	0	0			REV__ENST00000546847.5_1_12:49315769-49317670:-|nuORF	REV__ENST00000546847.5_1_12:49315769-49317670:-|nuORF	MSMS	A375_MHC_IP_R2	2	596.9011840820312	2	596.923209	1191.83187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.501	1	93.24	92.74	93.74	0.73902								0	0	0	0.16331	1	35178	35178		1.4819	0	1		+		59362	18768	43309	43643	57868	57868					0.243623373325363
VLPLKRLILKL	11	Unmodified	_VLPLKRLILKL_					0	0	0		nc|ENSG00000121440|Q9UPQ7-2|PDZRN3;nc|ENSG00000121440|Q9UPQ7-3|PDZRN3;ENSG00000121440|ENST00000263666|PDZRN3	nc|ENSG00000121440|Q9UPQ7-2|PDZRN3	nc|ENSG00000121440|Q9UPQ7-2|PDZRN3	MSMS	A375_MHC_IP_R2	2	653.3735961914062	2	653.470858	1304.92716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.98	1	124.31	123.81	124.81	0.32969								0	0	0	0.1636	1	47802	47802		0	0	1				59363	14569	43310	43644	57869	57869					0.2868969052358352
VLPLLVMV	8	Unmodified	_VLPLLVMV_					0	0	0		ENSG00000160791|ENST00000292303|CCR5;CCR5|p.G202E|1|0.27|ENSG00000160791|chr3:46373507-46373507|G/A|missense_variant	ENSG00000160791|ENST00000292303|CCR5	ENSG00000160791|ENST00000292303|CCR5	MSMS	A375_MHC_IP_R2	2	442.27752685546875	2	442.2879	882.561247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.918	1	28.596	28.096	29.096	0.67857								0	0	0	0.16876	1	9594	9594		2.8892	2.0956	1				59364	6443	43311	43645	57870	57870					0.11526866075632825
VLPPHIFSGV	10	Unmodified	_VLPPHIFSGV_					0	0	0		ENSG00000184564|ENST00000647374|SLITRK6	ENSG00000184564|ENST00000647374|SLITRK6	ENSG00000184564|ENST00000647374|SLITRK6	MULTI-SECPEP	A375_MHC_IP_R1	1	532.6454467773438	2	533.30821	1064.60187	-0.31193	-0.00016635	0.26723	0.00014252	-0.0447	-2.3839E-05	533.3081901208543	116.11	0.45757	116.11	115.83	116.29	0					13	8	2	0	0	0	0.87163	1	42572	42572		19.257	19.257	1	3714600			59365	8594	43312	43646	57871	57871					0.07214923719629951
VLPPPERK	8	Unmodified	_VLPPPERK_					0	0	0		THSD7B|p.P586L|1|0.35|ENSG00000144229|chr2:137231077-137231077|C/T|missense_variant	THSD7B|p.P586L|1|0.35|ENSG00000144229|chr2:137231077-137231077|C/T|missense_variant	THSD7B|p.P586L|1|0.35|ENSG00000144229|chr2:137231077-137231077|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	468.18389892578125	2	468.287277	934.560001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.163	1	84.163	83.663	84.663	0								0	0	0	0.16876	1	30820	30820		17.087	0	1				59366	29342	43313	43647	57872	57872					0.09010368031090366
VLPPPPTTL	9	Unmodified	_VLPPPPTTL_					0	0	0		ENST00000509818.5_1_4:119687763-119745832:-|nuORF;ENST00000514561.5_1_4:119681750-119745902:-|nuORF;ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D	ENST00000509818.5_1_4:119687763-119745832:-|nuORF;ENSG00000150961|ENST00000280551|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	MULTI-SECPEP	A375_MHC_IP_R2	2	468.1840515136719	2	467.784036	933.553519	-0.59704	-0.00027928	0.047863	2.239E-05	-0.54917	-0.00025689	467.784002454389	83.398	1.2219	84.137	83.544	84.766	0.73962					32	23	2	0	0	0	0.033126	1	31681	31681		97.075	43.499	1	1532700			59367	5870;12894	43314	43648	57873	57873					0.08408430079703066
VLPPSEALEKV	11	Unmodified	_VLPPSEALEKV_					0	0	0			REV__ENSG00000214814|ENST00000522917|FER1L6	REV__ENSG00000214814|ENST00000522917|FER1L6	MULTI-SECPEP	A375_MHC_IP_R1	1	394.157958984375	3	394.564056	1180.67034	0.60355	0.00023814	0.25721	0.00010149	0.86076	0.00033963	394.5641539653544	44.874	0.25199	44.874	44.676	44.928	0					9	4	3	0	0	0	0.97636	1	15690	15690		19.987	12.885	1	1405300	+		59368	22662	43315	43649	57874	57874					0.08723123508775643
VLPRARAAT	9	Unmodified	_VLPRARAAT_					0	0	0			REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	MULTI-MSMS	A375_MHC_IP_R2	2	954.983642578125	1	954.584325	953.577048	0.048138	4.5952E-05	-0.40206	-0.0003838	-0.35393	-0.00033785	954.5838995742321	145.3	0.30142	145.32	145.19	145.49	0.021423					31	24	2	0	0	0	0.77827	1	56753	56753		0	0	1	231460	+		59369	22326	43316	43650	57875	57875					0.09840288636871719
VLPRARAAT	9	Unmodified	_VLPRARAAT_					0	0	0			REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	MULTI-MATCH	A375_MHC_IP_R1	1		1	954.584325	953.577048	-0.30243	-0.0002887	-0.40112	-0.0003829	-0.70355	-0.0006716	954.5839685453631	145.27	0.40451	145.27	145.07	145.47	0	-0.0264	4.8216E-07	NaN	0	32	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212050	+		59370	22326	43316	43650							0.09840288636871719
VLPRARAAT	9	Unmodified	_VLPRARAAT_					0	0	0			REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	954.584325	953.577048	0.048138	4.5952E-05	-0.40206	-0.0003838	-0.35393	-0.00033785	954.5838995742321	145.3	0.30142	145.32	145.19	145.49	0.021423	0.0264	-4.1954E-07	NaN	0	31	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231460	+		59371	22326	43316	43650							0.09840288636871719
VLPRRKGE	8	Unmodified	_VLPRRKGE_					0	0	0			REV__ENST00000527321.1_1_11:77851057-77852843:+|nuORF	REV__ENST00000527321.1_1_11:77851057-77852843:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	477.62823486328125	2	477.795801	953.577048	-0.935	-0.00044674	-0.53571	-0.00025596	-1.4707	-0.0007027	477.79569772839193	59.041	0.45666	59.788	59.54	59.996	0.74714					11	8	2	0	0	0	0.972	1	22258	22258		2.5775	0	1	1048800	+		59372	25786	43317	43651	57876	57876					0.09840288636894456
VLPSIVNEV	9	Unmodified	_VLPSIVNEV_					0	0	0		nc|ENSG00000215021|Q99623-2|PHB2;ENSG00000215021|ENST00000535923|PHB2;ENST00000544888.5_1_12:7077022-7079603:-|nuORF;ENST00000543465.5_1_12:7077022-7079730:-|nuORF	nc|ENSG00000215021|Q99623-2|PHB2	nc|ENSG00000215021|Q99623-2|PHB2	MULTI-MSMS	A375_MHC_IP_R1	1	485.68426513671875	2	485.2844	968.554247	-0.25943	-0.0001259	-0.19192	-9.3137E-05	-0.45136	-0.00021904	485.28433355264474	100	0.65713	100	99.723	100.38	0					16	12	2	0	0	0	0.022213	1	36767	36767		81.613	17.377	1	2166500			59373	9635	43318	43652	57877	57877					0.06871224728752168
VLPSIVNEV	9	Unmodified	_VLPSIVNEV_					0	0	0		nc|ENSG00000215021|Q99623-2|PHB2;ENSG00000215021|ENST00000535923|PHB2;ENST00000544888.5_1_12:7077022-7079603:-|nuORF;ENST00000543465.5_1_12:7077022-7079730:-|nuORF	nc|ENSG00000215021|Q99623-2|PHB2	nc|ENSG00000215021|Q99623-2|PHB2	MULTI-SECPEP	A375_MHC_IP_R2	2	485.6315612792969	2	485.2844	968.554247	-0.42049	-0.00020406	-0.16803	-8.1544E-05	-0.58852	-0.0002856	485.284223418842	99.317	0.50884	100.08	99.708	100.22	0.75977					14	9	2	0	0	0	0.037185	1	37646	37646		96.285	18.135	1	2053000			59374	9635	43318	43652	57878	57878					0.06871224728752168
VLPTEEESL	9	Unmodified	_VLPTEEESL_					0	0	0			REV__ENSG00000165731|ENST00000355710|RET	REV__ENSG00000165731|ENST00000355710|RET	MSMS	A375_MHC_IP_R2	2	508.65771484375	2	508.760955	1015.50736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.812	1	74.548	74.048	75.048	0.73633								0	0	0	0.1521	1	28017	28017		18.135	2.3668	1		+		59375	20619	43319	43653	57879	57879					0.0002232038694955918
VLPVKKPKM	9	Unmodified	_VLPVKKPKM_					0	0	0		ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	MSMS	A375_MHC_IP_R1	1	520.3818359375	2	520.338455	1038.66236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.96	1	148.96	148.46	149.46	0								0	0	0	0.15486	1	56872	56872		0.52476	0.066424	1				59376	8172	43320	43654	57880	57880					0.14457317778351353
VLPVLLGILLI	11	Unmodified	_VLPVLLGILLI_					0	0	0		ENSG00000102287|ENST00000370328|GABRE;nc|ENSG00000102287|P78334-2|GABRE	ENSG00000102287|ENST00000370328|GABRE	ENSG00000102287|ENST00000370328|GABRE	MSMS	A375_MHC_IP_R2	2	581.9122924804688	2	581.91231	1161.81007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.386	1	86.122	85.622	86.622	0.73601								0	0	0	0.16353	1	32460	32460		0.35063	0	1				59377	2369	43321	43655	57881	57881					0.23563532584012137
VLPYDSEPL	9	Unmodified	_VLPYDSEPL_					0	0	0			REV__ENST00000493756.1_1_1:40997452-41013129:+|nuORF	REV__ENST00000493756.1_1_1:40997452-41013129:+|nuORF	MSMS	A375_MHC_IP_R2	2	516.6900024414062	2	516.76604	1031.51753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.457	1	54.208	53.708	54.708	0.75105								0	0	0	0.15486	1	20172	20172		13.508	2.684	1		+		59378	25427	43322	43656	57882	57882					0.003029281122053362
VLQAALGV	8	Unmodified	_VLQAALGV_					0	0	0		ENST00000496244.5_1_2:202630521-202633608:-|nuORF;ENST00000462747.1_1_2:202630291-202633608:-|nuORF;nc|ENSG00000003393|Q96Q42-2|ALS2;nc|ENSG00000003393|Q96Q42-3|ALS2;ENST00000482789.5_1_2:202606311-202633608:-|nuORF;ENST00000482891.5_1_2:202587756-202633608:-|nuORF;ENSG00000003393|ENST00000264276|ALS2	ENST00000496244.5_1_2:202630521-202633608:-|nuORF	ENST00000496244.5_1_2:202630521-202633608:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	772.3914184570312	1	770.477066	769.469789	-1.1283	-0.00086931	0.48427	0.00037312	-0.64401	-0.00049619	770.4773520411455	97.193	0.71176	97.949	97.569	98.281	0.75586					30	13	3	0	0	0	0.73946	1	36857	36857		23.148	2.2772	1	18460000			59379	859	43323	43657	57883	57883					0.07583318702654651
VLQALGSEP	9	Unmodified	_VLQALGSEP_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-SECPEP	A375_MHC_IP_R1	1	457.6527404785156	2	457.2531	912.491647	-0.25567	-0.0001169	-0.22023	-0.0001007	-0.47589	-0.0002176	457.25304118313255	99.514	0.65655	99.514	99.268	99.925	0					19	12	2	0	0	0	0.52144	1	36582	36582		23.148	0	1	2255300			59380	9204	43324	43658	57884	57884					0.031900786605774556
VLQAVERAK	9	Unmodified	_VLQAVERAK_					0	0	0		nc|ENSG00000065717|Q04725-2|TLE2;nc|ENSG00000065717|Q04725-3|TLE2;ENSG00000065717|ENST00000262953|TLE2	nc|ENSG00000065717|Q04725-2|TLE2	nc|ENSG00000065717|Q04725-2|TLE2	MULTI-SECPEP	A375_MHC_IP_R1	1	507.708251953125	2	507.308741	1012.60293	-0.063407	-3.2167E-05	-0.30106	-0.00015273	-0.36447	-0.0001849	507.3085394081366	39.059	0.55969	39.059	38.78	39.34	0					19	10	2	0	0	0	0.55359	1	13290	13290		15.847	0	1	30736000			59381	1392	43325	43659	57885	57885					0.09713138088511641
VLQCHESL	8	Unmodified	_VLQCHESL_					0	0	0		ENSG00000103994|ENST00000564754|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106	ENSG00000103994|ENST00000564754|ZNF106	ENSG00000103994|ENST00000564754|ZNF106	MSMS	A375_MHC_IP_R1	1	464.6787414550781	2	464.731477	927.448402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.397	1	55.397	54.897	55.897	0								0	0	0	0.16876	1	19811	19811		15.768	0	1				59382	2477	43326	43660	57886	57886					-0.0182243438837304
VLQCSDRQQR	10	Unmodified	_VLQCSDRQQR_					0	0	0			REV__ENSG00000166428|ENST00000392593|PLD4	REV__ENSG00000166428|ENST00000392593|PLD4	MULTI-SECPEP	A375_MHC_IP_R2	2	410.9577941894531	3	411.543661	1231.60915	-0.25381	-0.00010445	-3.6088	-0.0014852	-3.8626	-0.0015896	411.5425397397251	19.005	0.23048	19.608	19.452	19.683	0.60308					5	4	2	0	0	0	0.93041	1	5772	5772		11.518	4.4808	1	2850500	+		59383	20677	43327	43661	57887	57887					0.002612882577068376
VLQDKDLFSV	10	Unmodified	_VLQDKDLFSV_					0	0	0		ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	MULTI-MSMS	A375_MHC_IP_R1	1	582.71826171875	2	582.318971	1162.62339	-0.17078	-9.9449E-05	-0.65054	-0.00037882	-0.82132	-0.00047827	582.3187657535727	83.027	0.45421	83.027	82.823	83.277	0					18	8	3	0	0	0	0.076247	1	30373	30373		68.76	21.165	1	2611900			59384	5012	43328	43662	57888	57888					0.04858263957635245
VLQDKDLFSV	10	Unmodified	_VLQDKDLFSV_					0	0	0		ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	MULTI-SECPEP	A375_MHC_IP_R2	2	582.719482421875	2	582.318971	1162.62339	-0.41978	-0.00024445	0.67722	0.00039436	0.25744	0.00014991	582.3189982458325	82.214	0.51031	82.957	82.684	83.195	0.74293					18	9	3	0	0	0	0.41513	1	31212	31212		53.404	25.775	1	2580700			59385	5012	43328	43662	57889	57889					0.04858263957635245
VLQDTVEQL	9	Unmodified	_VLQDTVEQL_					0	0	0		ENST00000447721.6_1_12:57881873-57905922:+|nuORF;nc|ENSG00000166986|P56192-2|MARS1;ENSG00000166986|ENST00000262027|MARS1	ENST00000447721.6_1_12:57881873-57905922:+|nuORF	ENST00000447721.6_1_12:57881873-57905922:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1809692382812	2	522.782222	1043.54989	-0.38708	-0.00020236	-0.32986	-0.00017244	-0.71694	-0.0003748	522.7819010816543	72.599	0.659	72.599	72.423	73.082	0					15	12	2	0	0	0	0.60917	1	26450	26450		19.257	14.501	1	1545700			59386	7146	43329	43663	57890	57890					0.029857155152058112
VLQEDKDHWD	10	Unmodified	_VLQEDKDHWD_					0	0	0		MAPKAPK3|p.E330K|1|0.24|ENSG00000114738|chr3:50647195-50647195|G/A|missense_variant;ENSG00000114738|ENST00000621469|MAPKAPK3	MAPKAPK3|p.E330K|1|0.24|ENSG00000114738|chr3:50647195-50647195|G/A|missense_variant	MAPKAPK3|p.E330K|1|0.24|ENSG00000114738|chr3:50647195-50647195|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	429.2665710449219	3	428.866687	1283.57823	-0.46176	-0.00019803	-0.50702	-0.00021745	-0.96878	-0.00041548	428.86670831793964	38.087	0.36075	38.861	38.636	38.997	0.77451					15	6	3	0	0	0	0.94755	1	14005	14005		3.0723	1.7426	1	4447200			59387	3239	43330	43664	57891	57891					-0.05221586575544279
VLQEKIEVV	9	Unmodified	_VLQEKIEVV_					0	0	0		nc|ENSG00000163681|Q14BN4-2|SLMAP;nc|ENSG00000163681|Q14BN4-3|SLMAP;nc|ENSG00000163681|Q14BN4|SLMAP;ENSG00000163681|ENST00000671191|SLMAP;nc|ENSG00000163681|Q14BN4-7|SLMAP;ENST00000467901.1_1_3:57743378-57875870:+|nuORF;nc|ENSG00000163681|Q14BN4-6|SLMAP	nc|ENSG00000163681|Q14BN4-2|SLMAP	nc|ENSG00000163681|Q14BN4-2|SLMAP	MULTI-SECPEP	A375_MHC_IP_R1	1	529.2183837890625	2	528.818607	1055.62266	-0.53209	-0.00028138	-0.13814	-7.3053E-05	-0.67024	-0.00035443	528.8185366195386	57.557	0.55931	57.557	57.313	57.873	0					26	10	3	0	0	0	0.14554	1	20632	20632		65.474	23.634	1	5700200			59388	6706	43331	43665	57892	57892					0.09707469308591499
VLQEKIEVV	9	Unmodified	_VLQEKIEVV_					0	0	0		nc|ENSG00000163681|Q14BN4-2|SLMAP;nc|ENSG00000163681|Q14BN4-3|SLMAP;nc|ENSG00000163681|Q14BN4|SLMAP;ENSG00000163681|ENST00000671191|SLMAP;nc|ENSG00000163681|Q14BN4-7|SLMAP;ENST00000467901.1_1_3:57743378-57875870:+|nuORF;nc|ENSG00000163681|Q14BN4-6|SLMAP	nc|ENSG00000163681|Q14BN4-2|SLMAP	nc|ENSG00000163681|Q14BN4-2|SLMAP	MULTI-SECPEP	A375_MHC_IP_R2	2	529.1712036132812	2	528.818607	1055.62266	-0.96688	-0.00051131	-0.080507	-4.2574E-05	-1.0474	-0.00055388	528.8185068272536	56.695	0.6633	57.445	57.203	57.867	0.75015					30	12	3	0	0	0	0.14554	1	21449	21449		49.527	1.7786	1	7344800			59389	6706	43331	43665	57893	57893					0.09707469308591499
VLQEKLFSV	9	Unmodified	_VLQEKLFSV_					0	0	0		ENSG00000213215|ENST00000641412|OR2F1	ENSG00000213215|ENST00000641412|OR2F1	ENSG00000213215|ENST00000641412|OR2F1	MULTI-SECPEP	A375_MHC_IP_R2	2	532.2132568359375	2	531.813325	1061.6121	-0.67355	-0.0003582	-0.11543	-6.1389E-05	-0.78899	-0.00041959	531.8133963126838	108.08	0.61494	108.84	108.51	109.12	0.75436					17	11	2	0	0	0	0.16764	1	40843	40843		43.772	0	1	1802600			59390	9559	43332	43666	57894	57894					0.08375486654176711
VLQEKVPEI	9	Unmodified	_VLQEKVPEI_					0	0	0		ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;nc|ENSG00000179832|Q8NDA8-3|MROH1	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-SECPEP	A375_MHC_IP_R1	1	528.2108154296875	2	527.810782	1053.60701	-0.56066	-0.00029592	-0.085854	-4.5315E-05	-0.64651	-0.00034124	527.810794572924	58.174	0.65887	58.174	57.923	58.582	0					24	12	3	0	0	0	0.054506	1	20876	20876		91.085	45.385	1	3286700			59391	8251	43333	43667	57895	57895					0.08235182791554507
VLQEKVPEI	9	Unmodified	_VLQEKVPEI_					0	0	0		ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;nc|ENSG00000179832|Q8NDA8-3|MROH1	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-SECPEP	A375_MHC_IP_R2	2	528.2098999023438	2	527.810782	1053.60701	-0.85808	-0.0004529	-0.94116	-0.00049675	-1.7992	-0.00094965	527.810324343058	57.353	0.71553	58.102	57.762	58.477	0.74894					26	13	3	0	0	0	0.13199	1	21676	21676		69.338	32.832	1	4853300			59392	8251	43333	43667	57896	57896					0.08235182791554507
VLQESIKRV	9	Unmodified	_VLQESIKRV_					0	0	0		ENSG00000135801|ENST00000258281|TAF5L;nc|ENSG00000135801|O75529-2|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	MULTI-MSMS	A375_MHC_IP_R1	1	358.2610168457031	3	357.888874	1070.64479	-0.24506	-8.7704E-05	-0.32015	-0.00011458	-0.56521	-0.00020228	357.8887373463329	26.702	0.35279	26.702	26.575	26.928	0					12	6	2	0	0	0	0.48411	1	8071	8071		20.581	10.817	1	2921700			59393	4714	43334	43668	57897	57897					0.11229693777045213
VLQESIKRV	9	Unmodified	_VLQESIKRV_					0	0	0		ENSG00000135801|ENST00000258281|TAF5L;nc|ENSG00000135801|O75529-2|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	MULTI-MSMS	A375_MHC_IP_R2	2	358.26092529296875	3	357.888874	1070.64479	-0.63278	-0.00022646	0.50498	0.00018073	-0.12779	-4.5736E-05	357.88896106223126	26.018	0.50812	26.678	26.5	27.008	0.65992					14	9	2	0	0	0	0.48411	1	8870	8870		20.581	9.0631	1	2001400			59394	4714	43334	43668	57898	57898					0.11229693777045213
VLQGAVPTV	9	Unmodified	_VLQGAVPTV_					0	0	0		nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-MSMS	A375_MHC_IP_R1	1	442.6659240722656	2	442.26601	882.517468	-0.013884	-6.1402E-06	0.36031	0.00015935	0.34642	0.00015321	442.26611107780616	70.828	0.66479	70.828	70.494	71.159	0					34	12	3	0	0	0	0.0098409	1	25687	25687		115.69	22.87	1	20907000			59395	5625	43335	43669	57899	57899					0.07150972902843478
VLQGAVPTV	9	Unmodified	_VLQGAVPTV_					0	0	0		nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-MSMS	A375_MHC_IP_R2	2	442.6666259765625	2	442.26601	882.517468	-0.28529	-0.00012617	0.32468	0.0001436	0.039397	1.7424E-05	442.2660105417682	70.048	0.86498	70.782	70.437	71.302	0.73421					51	16	5	0	0	0	0.0097266	1	26513	26513		111.29	26.015	1	21190000			59396	5625	43335	43669	57900	57900					0.07150972902843478
VLQGKLAEV	9	Unmodified	_VLQGKLAEV_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	A375_MHC_IP_R1	1	478.6098937988281	2	478.792392	955.570232	0.10895	5.2165E-05	-0.53734	-0.00025728	-0.42839	-0.00020511	478.7921187805921	44.973	0.95939	44.973	44.575	45.534	0					41	18	4	0	0	0	0.022401	1	15685	15685		110.67	25.318	1	23626000			59397	4099;14587	43336	43670	57901	57901					0.09066930965650499
VLQGKLAEV	9	Unmodified	_VLQGKLAEV_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	A375_MHC_IP_R2	2	478.6097412109375	2	478.792392	955.570232	-0.4014	-0.00019219	-0.34764	-0.00016645	-0.74905	-0.00035864	478.7921854312972	44.09	0.70875	44.859	44.58	45.289	0.76909					33	13	4	0	0	0	0.03109	1	16416	16416		92.653	18.231	1	22497000			59398	4099;14587	43336	43670	57902	57902					0.09066930965650499
VLQGKLAEV	9	Unmodified	_VLQGKLAEV_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	A375_MHC_IP_R2	2	479.19189453125	2	478.792392	955.570232	-0.52165	-0.00024976	0.061519	2.9455E-05	-0.46013	-0.00022031	478.79239250623084	62.913	0.65659	63.655	63.383	64.04	0.74263					26	12	3	0	0	0	0.037185	1	23815	23815		85.272	0	1	8189900			59399	4099;14587	43336	43670	57903	57903					0.09066930965650499
VLQHGCCPY	9	Unmodified	_VLQHGCCPY_					0	0	0		nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;ENST00000513190.1_1_3:129233175-129239105:+|nuORF	nc|ENSG00000163913|Q9HBG6-7|IFT122	nc|ENSG00000163913|Q9HBG6-7|IFT122	MULTI-MSMS	A375_MHC_IP_R1	1	1019.4911499023438	1	1019.44373	1018.43646	0.18102	0.00018454	0.24955	0.0002544	0.43056	0.00043893	1019.4441600685018	61.661	0.45759	61.661	61.382	61.839	0					13	8	2	0	0	0	0.72507	1	22174	22174		4.756	0	1	4372700			59400	6743	43337	43671	57904	57904					-0.07202374403209433
VLQHGCCPY	9	Unmodified	_VLQHGCCPY_					0	0	0		nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;ENST00000513190.1_1_3:129233175-129239105:+|nuORF	nc|ENSG00000163913|Q9HBG6-7|IFT122	nc|ENSG00000163913|Q9HBG6-7|IFT122	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	1019.44373	1018.43646	0.18102	0.00018454	0.24955	0.0002544	0.43056	0.00043893	1019.4441600685018	61.661	0.45759	61.661	61.382	61.839	0	-0.0063054	-0.00047805	NaN	4.756	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4372700			59401	6743	43337	43671							-0.07202374403209433
VLQHLLRPLF	10	Unmodified	_VLQHLLRPLF_					0	0	0		ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MSMS	A375_MHC_IP_R2	2	618.4268188476562	2	618.384783	1234.75501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.261	1	73.997	73.497	74.497	0.73541								0	0	0	0.15508	1	27808	27808		4.3292	0	1				59402	8335	43338	43672	57905	57905					0.1470253883605892
VLQKESLMS	9	Unmodified	_VLQKESLMS_					0	0	0		PMFBP1|p.A698V|1|0.18|ENSG00000118557|chr16:72126128-72126128|G/A|missense_variant	PMFBP1|p.A698V|1|0.18|ENSG00000118557|chr16:72126128-72126128|G/A|missense_variant	PMFBP1|p.A698V|1|0.18|ENSG00000118557|chr16:72126128-72126128|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	517.687255859375	2	517.781167	1033.54778	-0.98649	-0.00051078	-0.057864	-2.9961E-05	-1.0443	-0.00054074	517.7812196450502	38.298	3.6164	39.073	38.279	41.895	0.77451					180	70	4	0	0	0	0.51106	1	14738	14738		19.257	3.1079	1	26281000			59403	15203	43339	43673	57906	57906					0.032349635057244086
VLQKQLDDA	9	Unmodified	_VLQKQLDDA_					0	0	0		nc|ENSG00000111879|Q8NB25-2|FAM184A;FAM184A|p.Q613Hfs*10|1|0.23|ENSG00000111879|chr6:119003599-119003599|T/-|frameshift_variant;nc|ENSG00000111879|Q8NB25-3|FAM184A;ENSG00000111879|ENST00000338891|FAM184A;nc|ENSG00000111879|Q8NB25-4|FAM184A	nc|ENSG00000111879|Q8NB25-2|FAM184A	nc|ENSG00000111879|Q8NB25-2|FAM184A	MULTI-SECPEP	A375_MHC_IP_R1	1	515.6820068359375	2	515.282389	1028.55022	-0.61633	-0.00031758	0.21995	0.00011334	-0.39637	-0.00020424	515.2823492353756	24.622	0.40527	24.622	24.498	24.903	0					10	7	2	0	0	0	0.67483	1	7072	7072		14.838	0	1	2846700			59404	14545	43340	43674	57907	57907					0.03709135235044414
VLQKQLDDA	9	Unmodified	_VLQKQLDDA_					0	0	0		nc|ENSG00000111879|Q8NB25-2|FAM184A;FAM184A|p.Q613Hfs*10|1|0.23|ENSG00000111879|chr6:119003599-119003599|T/-|frameshift_variant;nc|ENSG00000111879|Q8NB25-3|FAM184A;ENSG00000111879|ENST00000338891|FAM184A;nc|ENSG00000111879|Q8NB25-4|FAM184A	nc|ENSG00000111879|Q8NB25-2|FAM184A	nc|ENSG00000111879|Q8NB25-2|FAM184A	MULTI-MATCH	A375_MHC_IP_R2	2		2	515.282389	1028.55022	-1.0079	-0.00051937	-0.11051	-5.6945E-05	-1.1184	-0.00057631	515.2821866746871	24.049	0.30618	24.693	24.55	24.857	0.64368	0.035266	-0.00014053	NaN	14.838	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2296500			59405	14545	43340	43674							0.03709135235044414
VLQKYHTI	8	Unmodified	_VLQKYHTI_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-SECPEP	A375_MHC_IP_R1	1	500.71893310546875	2	501.292559	1000.57057	-0.41242	-0.00020674	1.2448	0.00062402	0.8324	0.00041728	501.293256372438	42.057	0.50793	42.057	41.725	42.233	0					13	9	2	0	0	0	0.96296	1	14621	14621		15.768	10.008	1	2455000			59406	3793	43341	43675	57908	57908					0.07030350685522535
VLQLKQEL	8	Unmodified	_VLQLKQEL_					0	0	0		ENST00000526500.5_1_11:111859671-111889757:+|nuORF;nc|ENSG00000150764|Q155Q3-2|DIXDC1;ENSG00000150764|ENST00000440460|DIXDC1	ENST00000526500.5_1_11:111859671-111889757:+|nuORF	ENST00000526500.5_1_11:111859671-111889757:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	485.17364501953125	2	485.800217	969.585882	-0.79471	-0.00038607	-0.08962	-4.3538E-05	-0.88433	-0.00042961	485.8001753584256	71.2	0.60802	71.934	71.656	72.264	0.73421					19	11	2	0	0	0	0.0975	1	26988	26988		81.613	0	1	6207200			59407	5862	43342	43676	57909	57909					0.09987217482705546
VLQLLHLPQ	9	Unmodified	_VLQLLHLPQ_					0	0	0		ENST00000397636.2_1_7:99737498-99738123:-|nuORF	ENST00000397636.2_1_7:99737498-99738123:-|nuORF	ENST00000397636.2_1_7:99737498-99738123:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	354.97186279296875	3	354.221965	1059.64407	-0.072252	-2.5593E-05	-0.31457	-0.00011143	-0.38682	-0.00013702	354.2219372375453	34.719	0.25232	34.719	34.507	34.759	0					7	4	2	0	0	0	0.80332	1	11423	11423		2.4985	0	1	1336400			59408	11506	43343	43677	57910	57910					0.11662899127986748
VLQNEKNKS	9	Unmodified	_VLQNEKNKS_					0	0	0		TRPM3|p.E112K|1|0.23|ENSG00000083067|chr9:70863036-70863036|C/T|missense_variant	TRPM3|p.E112K|1|0.23|ENSG00000083067|chr9:70863036-70863036|C/T|missense_variant	TRPM3|p.E112K|1|0.23|ENSG00000083067|chr9:70863036-70863036|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	353.301025390625	3	353.864617	1058.57202	0.14546	5.1473E-05	0.10819	3.8284E-05	0.25365	8.9757E-05	354.19887179671935	22.933	0.20086	22.933	22.823	23.024	0					5	3	2	0	0	0	0.76106	1	6225	6225		6.1918	0	1	1124300			59409	30079	43344	43678	57911	57911					0.04507939983614051
VLQNSTNI	8	Unmodified	_VLQNSTNI_					0	0	0			REV__ENST00000506359.1_1_4:73012322-73013526:+|nuORF	REV__ENST00000506359.1_1_4:73012322-73013526:+|nuORF	MSMS	A375_MHC_IP_R1	1	444.6688232421875	2	444.742899	887.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.302	1	59.302	58.802	59.802	0								0	0	0	0.16876	1	21328	21328		12.532	0	1		+		59410	16421	43345	43679	57912	57912					0.02300908000745494
VLQPDAPQILL	11	Unmodified	_VLQPDAPQILL_					0	0	0		ENSG00000139182|ENST00000266546|CLSTN3;nc|ENSG00000139182|Q9BQT9-2|CLSTN3	ENSG00000139182|ENST00000266546|CLSTN3	ENSG00000139182|ENST00000266546|CLSTN3	MULTI-SECPEP	A375_MHC_IP_R2	2	604.2583618164062	2	603.858264	1205.70197	-0.3486	-0.0002105	1.2762	0.00077065	0.92762	0.00056015	603.8589066936737	134.39	0.30486	134.53	134.39	134.7	0.13901					11	5	3	0	0	0	0.79027	1	52887	52887		33.445	4.3633	1	7292100			59411	5058	43346	43680	57913	57913					0.10735116262753763
VLQQHLETL	9	Unmodified	_VLQQHLETL_					0	0	0		ENSG00000140382|ENST00000336216|HMG20A	ENSG00000140382|ENST00000336216|HMG20A	ENSG00000140382|ENST00000336216|HMG20A	MULTI-SECPEP	A375_MHC_IP_R1	1	541.1201171875	2	540.806031	1079.59751	-0.65858	-0.00035616	0.30889	0.00016705	-0.34969	-0.00018911	540.8058728155177	50.485	0.45851	50.485	50.305	50.764	0					13	8	2	0	0	0	0.41434	1	17932	17932		26.268	4.7312	1	1493100			59412	5149	43347	43681	57914	57914					0.060894145060501614
VLQQHLETL	9	Unmodified	_VLQQHLETL_					0	0	0		ENSG00000140382|ENST00000336216|HMG20A	ENSG00000140382|ENST00000336216|HMG20A	ENSG00000140382|ENST00000336216|HMG20A	MULTI-SECPEP	A375_MHC_IP_R2	2	541.2055053710938	2	540.806031	1079.59751	-1.1313	-0.00061179	0.57303	0.0003099	-0.55823	-0.00030189	540.8061697961898	49.627	0.4565	50.383	50.145	50.601	0.75661					14	8	2	0	0	0	0.49205	1	18699	18699		21.537	0	1	1424800			59413	5149	43347	43681	57915	57915					0.060894145060501614
VLQQTFFAVFG	11	Unmodified	_VLQQTFFAVFG_					0	0	0		MRPL44|p.I199F|1|0.18|ENSG00000135900|chr2:223959949-223959949|A/T|missense_variant	MRPL44|p.I199F|1|0.18|ENSG00000135900|chr2:223959949-223959949|A/T|missense_variant	MRPL44|p.I199F|1|0.18|ENSG00000135900|chr2:223959949-223959949|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	628.1477661132812	2	628.837331	1255.66011	-0.69787	-0.00043885	0.14839	9.3314E-05	-0.54948	-0.00034553	628.8370157769281	93.458	0.30382	94.203	94.058	94.362	0.74474					6	5	2	0	0	0	0.99227	1	35588	35588		2.9952	0	1	1239600			59414	14406	43348	43682	57916	57916					0.042505605742235275
VLQRDLRKV	9	Unmodified	_VLQRDLRKV_					0	0	0		nc|ENSG00000126756|Q9UBK9-2|UXT;ENSG00000126756|ENST00000333119|UXT;ENST00000376964.3_1_X:47517084-47518326:-|nuORF	nc|ENSG00000126756|Q9UBK9-2|UXT	nc|ENSG00000126756|Q9UBK9-2|UXT	MULTI-MSMS	A375_MHC_IP_R1	1	376.6401672363281	3	376.240018	1125.69823	0.56823	0.00021379	-1.2964	-0.00048774	-0.72813	-0.00027395	376.23989667042906	21.392	0.71002	21.392	20.895	21.606	0					26	13	3	0	0	0	0.50355	1	5671	5671		19.626	6.0111	1	1542900			59415	4057	43349	43683	57917	57917					0.14040491279547496
VLQRRWEL	8	Unmodified	_VLQRRWEL_					0	0	0			REV__ENSG00000041802|ENST00000265245|LSG1	REV__ENSG00000041802|ENST00000265245|LSG1	MULTI-MSMS	A375_MHC_IP_R1	1	367.6171569824219	3	367.217214	1098.62981	0.28683	0.00010533	-0.093018	-3.4158E-05	0.19381	7.1172E-05	367.21731911508016	59.819	0.45736	59.819	59.548	60.006	0					19	8	4	0	0	0	0.77515	1	21524	21524		9.3831	0	1	3297100	+		59416	16343	43350	43684	57918	57918					0.08444246699696123
VLQRSLVTV	9	Unmodified	_VLQRSLVTV_					0	0	0		EXOC3|p.R204H|1|0.17|ENSG00000180104|chr5:453616-453616|G/A|missense_variant;ENSG00000180104|ENST00000512944|EXOC3	EXOC3|p.R204H|1|0.17|ENSG00000180104|chr5:453616-453616|G/A|missense_variant	EXOC3|p.R204H|1|0.17|ENSG00000180104|chr5:453616-453616|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	508.2004699707031	2	507.818941	1013.62333	-0.20052	-0.00010183	-0.60229	-0.00030585	-0.80281	-0.00040768	507.8185126301868	54.188	0.40155	54.188	53.962	54.364	0					13	7	3	0	0	0	0.34746	1	19361	19361		24.991	5.734	1	2113200			59417	8277	43351	43685	57919	57919					0.11706308748341598
VLQRSLVTV	9	Unmodified	_VLQRSLVTV_					0	0	0		EXOC3|p.R204H|1|0.17|ENSG00000180104|chr5:453616-453616|G/A|missense_variant;ENSG00000180104|ENST00000512944|EXOC3	EXOC3|p.R204H|1|0.17|ENSG00000180104|chr5:453616-453616|G/A|missense_variant	EXOC3|p.R204H|1|0.17|ENSG00000180104|chr5:453616-453616|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	507.979736328125	2	507.818941	1013.62333	-1.3383	-0.0006796	0.55426	0.00028146	-0.78403	-0.00039814	507.8191335052857	53.27	0.35724	54.021	53.79	54.147	0.75105					12	6	3	0	0	0	0.4465	1	20059	20059		19.362	0.10495	1	2367500			59418	8277	43351	43685	57920	57920					0.11706308748341598
VLQSDTMDHY	10	Unmodified	_VLQSDTMDHY_					0	0	0		ENST00000442885.2_1_11:65655295-65655958:-|nuORF;ENST00000528937.1_1_11:65654989-65655958:-|nuORF;ENST00000532679.5_1_11:65653270-65655931:-|nuORF;ENSG00000172500|ENST00000357519|FIBP;nc|ENSG00000172500|O43427|FIBP	ENST00000442885.2_1_11:65655295-65655958:-|nuORF	ENST00000442885.2_1_11:65655295-65655958:-|nuORF	MSMS	A375_MHC_IP_R1	1	604.7818603515625	2	604.766245	1207.51794	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.837	1	89.837	89.337	90.337	0								0	0	0	0.15508	1	33010	33010		4.3292	0	1				59419	7716	43352	43686	57921	57921					-0.07752020230259404
VLQWTQKEPDA	11	Unmodified	_VLQWTQKEPDA_					0	0	0		MDGA1|p.R665K|1|0.44|ENSG00000112139|chr6:37647225-37647225|C/T|missense_variant	MDGA1|p.R665K|1|0.44|ENSG00000112139|chr6:37647225-37647225|C/T|missense_variant	MDGA1|p.R665K|1|0.44|ENSG00000112139|chr6:37647225-37647225|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	658.2366333007812	2	657.838059	1313.66157	-1.0739	-0.00070645	0.14779	9.7223E-05	-0.9261	-0.00060923	657.8377454304394	96.798	0.60598	97.553	97.368	97.974	0.75586					15	11	2	0	0	0	0.67565	1	36788	36788		17.443	3.0373	1	1560200			59420	14363	43353	43687	57922	57922					0.01728149872337781
VLQYVVPEV	9	Unmodified	_VLQYVVPEV_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-SECPEP	A375_MHC_IP_R1	1	523.6741333007812	2	523.30005	1044.58555	-0.32087	-0.00016791	0.24849	0.00013003	-0.072385	-3.7879E-05	523.3000830721709	106.38	1.1241	106.38	105.91	107.03	0					56	21	4	0	0	0	0.053904	1	39116	39116		85.272	9.5112	1	29712000			59421	2743	43354	43688	57923	57923					0.06503797762843533
VLQYVVPEV	9	Unmodified	_VLQYVVPEV_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-SECPEP	A375_MHC_IP_R2	2	522.65283203125	2	523.30005	1044.58555	-0.53308	-0.00027896	-0.032134	-1.6816E-05	-0.56521	-0.00029577	523.2998318845695	105.54	1.5786	106.3	105.71	107.29	0.75977					66	30	5	0	0	0	0.018928	1	39953	39953		111.29	57.454	1	29950000			59422	2743	43354	43688	57924	57924					0.06503797762843533
VLRAFDVP	8	Unmodified	_VLRAFDVP_					0	0	0		nc|ENSG00000121940|Q96S66-4|CLCC1;nc|ENSG00000121940|Q96S66-3|CLCC1;nc|ENSG00000121940|Q96S66-2|CLCC1;ENSG00000121940|ENST00000369969|CLCC1	nc|ENSG00000121940|Q96S66-4|CLCC1	nc|ENSG00000121940|Q96S66-4|CLCC1	MULTI-SECPEP	A375_MHC_IP_R2	2	459.0914001464844	2	458.766178	915.517802	-0.68132	-0.00031257	0.11459	5.257E-05	-0.56673	-0.00026	458.7661102943095	52.001	0.45878	52.754	52.524	52.983	0.75225					15	8	2	0	0	0	0.95423	1	19495	19495		4.3292	0	1	1940100			59423	3752	43355	43689	57925	57925					0.05666392622697458
VLRAKRKKVRR	11	Unmodified	_VLRAKRKKVRR_					0	0	0			REV__nc|ENSG00000173218|Q8TAA9-2|VANGL1	REV__nc|ENSG00000173218|Q8TAA9-2|VANGL1	MSMS	A375_MHC_IP_R2	2	705.2210693359375	2	705.486228	1408.9579	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.15	1	126.44	125.94	126.94	0.2951								0	0	0	0.16334	1	49328	49328		1.3295	0	1		+		59424	21205	43356	43690	57926	57926					0.26978281681181215
VLRALLLKH	9	Unmodified	_VLRALLLKH_					0	0	0		nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2	nc|ENSG00000164889|P04920-2|SLC4A2	nc|ENSG00000164889|P04920-2|SLC4A2	MULTI-SECPEP	A375_MHC_IP_R1	1	1063.2677001953125	1	1062.71461	1061.70733	0.17436	0.00018529	-3.9455	-0.004193	-3.7712	-0.0040077	1063.7118914372534	118.53	0.25352	118.53	118.42	118.68	0					5	4	2	0	0	0	0.79683	1	43685	43685		0.6015	0	1	43935000			59425	6890	43357	43691	57927	57927					0.17894884635893504
VLRAQKKRQKR	11	Unmodified	_VLRAQKKRQKR_					0	0	0			REV__nc|ENSG00000138190|Q8TAG9-2|EXOC6	REV__nc|ENSG00000138190|Q8TAG9-2|EXOC6	MSMS	A375_MHC_IP_R1	1	705.896240234375	2	705.960043	1409.90553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.58	0.99999	127.58	127.08	128.08	0								0	0	0	0.16331	1	48926	48926		1.4819	0	1		+		59426	19076	43358	43692	57928	57928					0.2169769854756396
VLRAYYAPAP	10	Unmodified	_VLRAYYAPAP_					0	0	0			REV__ENSG00000092847|ENST00000373204|AGO1	REV__ENSG00000092847|ENST00000373204|AGO1	MULTI-SECPEP	A375_MHC_IP_R2	2	560.1812744140625	2	560.811116	1119.60768	-0.37636	-0.00021107	-2.2147	-0.001242	-2.5911	-0.0014531	561.3126760673679	99.98	0.60829	100.74	100.37	100.98	0.76278					14	11	2	0	0	0	0.80715	1	37891	37891		16.942	0	1	1220700	+		59427	16976	43359	43693	57929	57929					0.05266022231262468
VLRCLLAYFLD	11	Unmodified	_VLRCLLAYFLD_					0	0	0		nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3;ENST00000487989.1_1_10:6264793-6268376:+|nuORF	nc|ENSG00000170525|Q16875-3|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	MULTI-MSMS	A375_MHC_IP_R2	2	663.7676391601562	2	663.367941	1324.72133	-0.66493	-0.00044109	0.29135	0.00019327	-0.37358	-0.00024782	663.368179217455	142.15	0.30344	142.18	142.03	142.33	0.030731					10	5	2	0	0	0	0.7362	1	55616	55616		2.9952	0.49676	1	693570			59428	7518	43360	43694	57930	57930					0.07195749281981989
VLRFFLEYQWF	11	Unmodified	_VLRFFLEYQWF_					0	0	0		ENST00000589448.5_1_19:19230741-19243387:-|nuORF;ENSG00000064545|ENST00000162044|TMEM161A;ENST00000587406.5_1_19:19232302-19249261:-|nuORF	ENST00000589448.5_1_19:19230741-19243387:-|nuORF	ENST00000589448.5_1_19:19230741-19243387:-|nuORF	MSMS	A375_MHC_IP_R1	1	516.6619262695312	3	516.606367	1546.79727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.165	1	54.165	53.665	54.665	0								0	0	0	0.16332	1	19327	19327		1.4551	0	1				59429	1352	43361	43695	57931	57931					0.045744694537916075
VLRHRHFVFL	10	Unmodified	_VLRHRHFVFL_					0	0	0		ENST00000528300.5_1_14:50459574-50472442:-|nuORF	ENST00000528300.5_1_14:50459574-50472442:-|nuORF	ENST00000528300.5_1_14:50459574-50472442:-|nuORF	MSMS	A375_MHC_IP_R1	1	662.6251220703125	2	662.393474	1322.77239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.2	1	142.2	141.7	142.7	0								0	0	0	0.15591	1	54565	54565		1.6526	0.17072	1				59430	13116	43362	43696	57932	57932					0.12391879161714314
VLRKKKKK	8	Unmodified	_VLRKKKKK_					0	0	0		ENSG00000155438|ENST00000285814|NIFK	ENSG00000155438|ENST00000285814|NIFK	ENSG00000155438|ENST00000285814|NIFK	MSMS	A375_MHC_IP_R2	2	514.4132690429688	2	514.376761	1026.73897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.115	1	73.851	73.351	74.351	0.73541								0	0	0	0.16876	1	27754	27754		0	0	1				59431	6143	43363	43697	57933	57933					0.22666877389815454
VLRKKKKKV	9	Unmodified	_VLRKKKKKV_					0	0	0		ENSG00000155438|ENST00000285814|NIFK	ENSG00000155438|ENST00000285814|NIFK	ENSG00000155438|ENST00000285814|NIFK	MULTI-SECPEP	A375_MHC_IP_R2	2	564.2103881835938	2	563.910968	1125.80738	-0.28588	-0.00016121	1.6728	0.00094334	1.387	0.00078212	563.9127971122037	99.449	0.25529	100.21	100.07	100.32	0.76077					6	4	2	0	0	0	0.81122	1	37740	37740		0	0	1	945060			59432	6143	43364	43698	57934	57934					0.24951121969661472
VLRKLAATAP	10	Unmodified	_VLRKLAATAP_					0	0	0		ENSG00000091986|ENST00000206423|CCDC80;nc|ENSG00000091986|Q76M96-2|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	MULTI-MSMS	A375_MHC_IP_R1	1	520.7339477539062	2	520.334759	1038.65496	-0.86672	-0.00045098	-0.40436	-0.0002104	-1.2711	-0.00066138	520.3344384247151	147.39	0.28325	147.39	147.28	147.57	0					62	30	3	0	0	0	0.72747	1	56308	56308		0	0	1	657590			59433	1988	43365	43699	57935	57935					0.13718301502240138
VLRKLAATAP	10	Unmodified	_VLRKLAATAP_					0	0	0		ENSG00000091986|ENST00000206423|CCDC80;nc|ENSG00000091986|Q76M96-2|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	520.334759	1038.65496	-0.86672	-0.00045098	-0.40436	-0.0002104	-1.2711	-0.00066138	520.3344384247151	147.39	0.28325	147.39	147.28	147.57	0	-0.018856	-7.3682E-05	NaN	0	62	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	657590			59434	1988	43365	43699							0.13718301502240138
VLRKLAATAP	10	Unmodified	_VLRKLAATAP_					0	0	0		ENSG00000091986|ENST00000206423|CCDC80;nc|ENSG00000091986|Q76M96-2|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	520.334759	1038.65496	-0.45578	-0.00023716	-0.2264	-0.00011781	-0.68218	-0.00035496	520.3345094590918	147.41	0.38065	147.43	147.31	147.69	0.019897	0.018856	0.00011151	NaN	0	82	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	519820			59435	1988	43365	43699							0.13718301502240138
VLRKRRQRIKI	11	Unmodified	_VLRKRRQRIKI_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MSMS	A375_MHC_IP_R2	2	733.7498779296875	2	733.499336	1464.98412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.1	1	116.76	116.26	117.26	0.65962								0	0	0	0.16353	1	43798	43798		0.35063	0	1				59436	4973	43366	43700	57936	57936					0.27022550852689164
VLRLDHDPY	9	Unmodified	_VLRLDHDPY_					0	0	0			REV__ENST00000480730.5_1_6:33271836-33272001:-|nuORF	REV__ENST00000480730.5_1_6:33271836-33272001:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	564.6948852539062	2	564.29583	1126.57711	-0.71712	-0.00040467	0.080736	4.5559E-05	-0.63638	-0.00035911	564.2957493120739	35.192	0.70734	35.955	35.525	36.233	0.76338					27	13	3	0	0	0	0.55534	1	12745	12745		27.629	17.555	1	8087500	+		59437	25246	43367	43701	57937	57937					0.018882438462242135
VLRLDHDPY	9	Unmodified	_VLRLDHDPY_					0	0	0			REV__ENST00000480730.5_1_6:33271836-33272001:-|nuORF	REV__ENST00000480730.5_1_6:33271836-33272001:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	564.29583	1126.57711	-0.32957	-0.00018597	-0.11912	-6.7219E-05	-0.44869	-0.00025319	564.2957203457077	35.996	0.66217	35.996	35.625	36.287	0	0.020643	-0.00013248	NaN	27.629	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4961100	+		59438	25246	43367	43701							0.018882438462242135
VLRLLGKKKLI	11	Unmodified	_VLRLLGKKKLI_					0	0	0			REV__ENSG00000172548|ENST00000311946|NIPAL4	REV__ENSG00000172548|ENST00000311946|NIPAL4	MSMS	A375_MHC_IP_R1	1	640.9898681640625	2	640.960658	1279.90676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.718	1	79.718	79.218	80.218	0								0	0	0	0.1636	1	29101	29101		0	0	1		+		59439	21155	43368	43702	57938	57938					0.27800519863785667
VLRLLVLRVL	10	Unmodified	_VLRLLVLRVL_					0	0	0			REV__nc|ENSG00000106633|P35557-3|GCK	REV__nc|ENSG00000106633|P35557-3|GCK	MSMS	A375_MHC_IP_R2	2	597.52001953125	2	597.426451	1192.83835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.272	1	90.004	89.504	90.504	0.7318								0	0	0	0.15628	1	33974	33974		0.45834	0	1		+		59440	17458	43369	43703	57939	57939					0.24964275283946336
VLRMRFRV	8	Unmodified	_VLRMRFRV_					0	0	0		ENST00000588321.1_1_19:11456628-11456775:-|nuORF;ENST00000586956.5_2_19:11456346-11456775:-|nuORF	ENST00000588321.1_1_19:11456628-11456775:-|nuORF	ENST00000588321.1_1_19:11456628-11456775:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	359.6203918457031	3	359.555173	1075.64369	-0.15612	-5.6134E-05	-0.65001	-0.00023371	-0.80613	-0.00028985	359.554948706715	133.6	0.30515	133.6	133.46	133.76	0					7	5	2	0	0	0	0.77848	1	51541	51541		0.45834	0.18932	1	2717700			59441	13738	43370	43704	57940	57940					0.10889200927135789
VLRNIVQFVP	10	Unmodified	_VLRNIVQFVP_					0	0	0		CPNE4|p.D501N|1|0.24|ENSG00000196353|chr3:131542595-131542595|C/T|missense_variant	CPNE4|p.D501N|1|0.24|ENSG00000196353|chr3:131542595-131542595|C/T|missense_variant	CPNE4|p.D501N|1|0.24|ENSG00000196353|chr3:131542595-131542595|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	395.631591796875	3	395.576519	1183.70773	-0.23256	-9.1996E-05	0.22914	9.0644E-05	-0.0034184	-1.3522E-06	395.57657471440666	19.293	0.3501	19.293	19.221	19.571	0					19	8	3	0	0	0	0.72006	1	4824	4824		3.3196	0	1	109260000			59442	646	43371	43705	57941	57941					0.1232225956507591
VLRNTEWCFGL	11	Unmodified	_VLRNTEWCFGL_					0	0	0		nc|ENSG00000143515|P98198-4|ATP8B2;ENST00000426445.1_1_1:154301436-154313374:+|nuORF;nc|ENSG00000143515|P98198-2|ATP8B2;ENSG00000143515|ENST00000368489|ATP8B2;nc|ENSG00000143515|P98198|ATP8B2;nc|ENSG00000143515|P98198-3|ATP8B2	nc|ENSG00000143515|P98198-4|ATP8B2	nc|ENSG00000143515|P98198-4|ATP8B2	MSMS	A375_MHC_IP_R2	2	669.3140869140625	2	669.337172	1336.65979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.345	1	84.084	83.584	84.584	0.73962								0	0	0	0.1623	1	31677	31677		6.7232	0.51738	1				59443	5404	43372	43706	57942	57942					0.004928175827217274
VLRPNGTL	8	Unmodified	_VLRPNGTL_					0	0	0			REV__nc|ENSG00000081913|O60346-2|PHLPP1	REV__nc|ENSG00000081913|O60346-2|PHLPP1	MULTI-SECPEP	A375_MHC_IP_R2	2	435.9660339355469	2	435.263802	868.513051	-0.29196	-0.00012708	-0.43245	-0.00018823	-0.72441	-0.00031531	435.2635381431062	41.755	0.25727	42.53	42.401	42.659	0.77451					8	4	2	0	0	0	0.86765	1	15536	15536		18.135	0	1	2044700	+		59444	16781	43373	43707	57943	57943					0.07353508479945958
VLRQQELF	8	Unmodified	_VLRQQELF_					0	0	0		ADORA2A|p.P313L|1|0.31|ENSG00000128271|chr22:24441188-24441188|C/T|missense_variant	ADORA2A|p.P313L|1|0.31|ENSG00000128271|chr22:24441188-24441188|C/T|missense_variant	ADORA2A|p.P313L|1|0.31|ENSG00000128271|chr22:24441188-24441188|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	517.1956787109375	2	516.795466	1031.57638	-0.018282	-9.448E-06	-0.59777	-0.00030893	-0.61605	-0.00031837	516.795118812315	44.731	0.81311	44.731	44.471	45.284	0					35	15	3	0	0	0	0.9187	1	15603	15603		25.399	2.663	1	5204300			59445	78	43374	43708	57944	57944					0.061854491971644165
VLRRAKRR	8	Unmodified	_VLRRAKRR_					0	0	0		nc|ENSG00000134755|Q02487-2|DSC2;ENSG00000134755|ENST00000280904|DSC2;DSC3|p.D382Kfs*5|1|0.18|ENSG00000134762|chr18:31018190-31018191|-/AACTAAATAGTTT|frameshift_variant;nc|ENSG00000134762|Q14574-2|DSC3;ENSG00000134762|ENST00000360428|DSC3;DSC3|p.N853Tfs*27|1|0.63|ENSG00000134762|chr18:30994308-30994308|T/-|frameshift_variant	nc|ENSG00000134755|Q02487-2|DSC2;DSC3|p.N853Tfs*27|1|0.63|ENSG00000134762|chr18:30994308-30994308|T/-|frameshift_variant	nc|ENSG00000134755|Q02487-2|DSC2	MULTI-SECPEP	A375_MHC_IP_R1	1	1054.9820556640625	1	1054.70684	1053.69956	-0.15205	-0.00016037	-1.0942	-0.0011541	-1.2463	-0.0013145	1055.7099990388483	120.93	0.35471	120.93	120.8	121.16	0					9	6	2	0	0	0	0.972	1	44823	44823		0.79363	0	1	54611000			59446	4602;803	43375	43709	57945	57945					0.17486170158963432
VLRRLVLWFFL	11	Unmodified	_VLRRLVLWFFL_					0	0	0			REV__ENSG00000075790|ENST00000005259|BCAP29	REV__ENSG00000075790|ENST00000005259|BCAP29	MULTI-MSMS	A375_MHC_IP_R1	1	488.3744812011719	3	487.974614	1460.90201	-0.59002	-0.00028792	0.67621	0.00032997	0.086184	4.2056E-05	488.30932646105214	138.03	0.71794	138.03	137.84	138.56	0					26	13	3	0	0	0	0.73924	1	53095	53095		0.094841	0.094841	1	5102100	+		59447	16662	43376	43710	57946	57946					0.1899963572100205
VLRRLVLWFFL	11	Unmodified	_VLRRLVLWFFL_					0	0	0			REV__ENSG00000075790|ENST00000005259|BCAP29	REV__ENSG00000075790|ENST00000005259|BCAP29	MULTI-MSMS	A375_MHC_IP_R2	2	488.3741760253906	3	487.974614	1460.90201	-0.38805	-0.00018936	0.34768	0.00016966	-0.040366	-1.9698E-05	487.9746589455606	137.96	0.60893	138.04	137.91	138.52	0.083954					22	11	3	0	0	0	0.73924	1	54138	54138		0.094841	0.011491	1	3894000	+		59448	16662	43376	43710	57947	57947					0.1899963572100205
VLRRRRRR	8	Unmodified	_VLRRRRRR_					0	0	0		ENST00000373930.3_1_9:123476433-123476640:-|nuORF	ENST00000373930.3_1_9:123476433-123476640:-|nuORF	ENST00000373930.3_1_9:123476433-123476640:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1166.9832763671875	1	1167.77699	1166.76971	0.16981	0.00019831	3.7045	0.004326	3.8743	0.0045243	1167.778828086053	120.9	0.20061	121.34	121.27	121.47	0.44488					5	3	2	0	0	0	0.972	1	46156	46156		0.79363	0	1	14092000			59449	11243	43377	43711	57948	57948					0.19299468547433207
VLRRRRRRRRR	11	Unmodified	_VLRRRRRRRRR_					0	0	0		ENST00000373930.3_1_9:123476433-123476640:-|nuORF	ENST00000373930.3_1_9:123476433-123476640:-|nuORF	ENST00000373930.3_1_9:123476433-123476640:-|nuORF	MSMS	A375_MHC_IP_R1	1	546.049072265625	3	546.031624	1635.07304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.32	1	22.32	21.82	22.82	0								0	0	0	0.1636	1	5980	5980		0	0	1				59450	11243	43378	43712	57949	57949					0.2809082365554332
VLRRRRRRRRR	11	Unmodified	_VLRRRRRRRRR_					0	0	0		ENST00000373930.3_1_9:123476433-123476640:-|nuORF	ENST00000373930.3_1_9:123476433-123476640:-|nuORF	ENST00000373930.3_1_9:123476433-123476640:-|nuORF	MSMS	A375_MHC_IP_R2	2	546.0486450195312	3	546.031624	1635.07304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.785	1	22.404	21.904	22.904	0.61932								0	0	0	0.1636	1	6884	6884		0	0	1				59451	11243	43378	43712	57950	57950					0.2809082365554332
VLRWSDGCRR	10	Unmodified	_VLRWSDGCRR_					0	0	0		ENST00000272542.7_1_2:113403505-113404244:+|nuORF	ENST00000272542.7_1_2:113403505-113404244:+|nuORF	ENST00000272542.7_1_2:113403505-113404244:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	624.6484985351562	2	624.324931	1246.63531	-0.57573	-0.00035944	-0.20714	-0.00012932	-0.78287	-0.00048876	624.3247172473547	95.655	0.85868	95.655	95.211	96.069	0					27	16	3	0	0	0	0.93799	1	35024	35024		1.4819	0.15237	1	2951600			59452	10388	43379	43713	57951	57951					0.021856022198335268
VLRYDNYKKQA	11	Unmodified	_VLRYDNYKKQA_					0	0	0		nc|ENSG00000157837|Q8TCT6-3|SPPL3;ENST00000545209.1_1_12:121202804-121206399:-|nuORF;ENST00000392495.7_1_12:121202804-121206971:-|nuORF;ENSG00000157837|ENST00000353487|SPPL3	nc|ENSG00000157837|Q8TCT6-3|SPPL3	nc|ENSG00000157837|Q8TCT6-3|SPPL3	MULTI-MSMS	A375_MHC_IP_R2	2	466.930908203125	3	466.589376	1396.7463	-0.68285	-0.00031861	-0.079819	-3.7243E-05	-0.76267	-0.00035585	466.5893153611497	67.12	0.7103	67.857	67.495	68.205	0.73631					37	13	4	0	0	0	0.62292	1	25417	25417		12.856	6.6216	1	10020000			59453	6270	43380	43714	57952	57952					0.0637952040892742
VLSAARSLV	9	Unmodified	_VLSAARSLV_					0	0	0			REV__ENST00000417466.5_1_3:11734608-11744508:-|nuORF	REV__ENST00000417466.5_1_3:11734608-11744508:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	458.6846008300781	2	458.284734	914.554916	-0.49851	-0.00022846	0.30726	0.00014081	-0.19125	-8.7646E-05	458.28478748469155	71.148	0.81104	71.883	71.503	72.314	0.73421					28	15	2	0	0	0	0.63327	1	27024	27024		18.146	7.3224	1	22184000	+		59454	24543	43381	43715	57953	57953					0.09422064168472843
VLSADTMILL	10	Unmodified	_VLSADTMILL_					0	0	0			REV__nc|ENSG00000117791|Q969Z3-2|MTARC2	REV__nc|ENSG00000117791|Q969Z3-2|MTARC2	MULTI-MSMS	A375_MHC_IP_R2	2	538.7072143554688	2	538.307018	1074.59948	-0.81744	-0.00044003	1.4881	0.00080108	0.67071	0.00036105	538.3081892878829	125.8	1.4629	126.1	125.47	126.93	0.2951					67	28	3	0	0	0	0.71361	1	49126	49126		6.2058	0.97511	1	38666000	+		59455	18021	43382	43716	57954	57954					0.06516707199625671
VLSASSVSF	9	Unmodified	_VLSASSVSF_					0	0	0			REV__ENSG00000170606|ENST00000304858|HSPA4	REV__ENSG00000170606|ENST00000304858|HSPA4	MULTI-SECPEP	A375_MHC_IP_R1	1	449.1393127441406	2	448.739825	895.465098	-0.11174	-5.0142E-05	-0.55438	-0.00024877	-0.66612	-0.00029891	448.7395910121794	55.323	0.5086	55.323	55.075	55.584	0					17	9	3	0	0	0	0.16229	1	19778	19778		48.346	0	1	3676000	+		59456	21006	43383	43717	57955	57955					0.01318389769244277
VLSCCCLT	8	Unmodified	_VLSCCCLT_					0	0	0		ENST00000430292.5_1_1:27113978-27114107:+|nuORF	ENST00000430292.5_1_1:27113978-27114107:+|nuORF	ENST00000430292.5_1_1:27113978-27114107:+|nuORF	MSMS	A375_MHC_IP_R1	1	421.13177490234375	2	421.18446	840.354367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.25	1	142.25	141.75	142.75	0								0	0	0	0.16876	1	54585	54585		2.3027	0	1				59457	11852	43384	43718	57956	57956					-0.07219612806522946
VLSCLIRLV	9	Unmodified	_VLSCLIRLV_					0	0	0			REV__ENSG00000146802|ENST00000312814|TMEM168	REV__ENSG00000146802|ENST00000312814|TMEM168	MULTI-SECPEP	A375_MHC_IP_R2	2	508.2184753417969	2	508.320263	1014.62597	-0.75994	-0.00038629	0.58502	0.00029738	-0.17492	-8.8917E-05	508.32055217550163	75.482	0.81532	76.223	75.825	76.64	0.74052					27	15	3	0	0	0	0.69504	1	28612	28612		4.3292	3.8045	1	6471600	+		59458	19549	43385	43719	57957	57957					0.11924440881625742
VLSELLWQV	9	Unmodified	_VLSELLWQV_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	A375_MHC_IP_R1	1	544.21240234375	2	543.813325	1085.6121	-0.79358	-0.00043156	-0.7356	-0.00040003	-1.5292	-0.00083159	543.8129879097719	130.59	0.40674	130.59	130.41	130.82	0					15	7	4	0	0	0	0.0094639	1	50279	50279		133.7	48.43	1	49128000			59459	3905	43386	43720	57958	57958					0.07271486654190085
VLSENRKSV	9	Unmodified	_VLSENRKSV_					0	0	0		TRIM15|p.D312N|1|0.27|ENSG00000204610|chr6:30171885-30171885|G/A|missense_variant	TRIM15|p.D312N|1|0.27|ENSG00000204610|chr6:30171885-30171885|G/A|missense_variant	TRIM15|p.D312N|1|0.27|ENSG00000204610|chr6:30171885-30171885|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	516.1851806640625	2	516.29583	1030.57711	-0.67067	-0.00034626	-0.56432	-0.00029136	-1.235	-0.00063762	516.295313684829	125.13	0.70116	125.13	124.65	125.35	0					19	13	3	0	0	0	0.64808	1	47373	47373		11.64	0	1	26333000			59460	30072	43387	43721	57959	57959					0.06304243846238933
VLSEPHPLVL	10	Unmodified	_VLSEPHPLVL_					0	0	0		ENST00000533428.2_1_15:97300531-97301611:+|nuORF	ENST00000533428.2_1_15:97300531-97301611:+|nuORF	ENST00000533428.2_1_15:97300531-97301611:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	552.2440185546875	2	552.326599	1102.63865	-0.75454	-0.00041675	0.068587	3.7882E-05	-0.68595	-0.00037887	552.3265962254185	86.029	1.5695	86.029	85.616	87.186	0					79	30	5	0	0	0	0.65982	1	31589	31589		26.884	0	1	49420000			59461	13197	43388	43722	57960	57960					0.09143175545523263
VLSERDLYR	9	Unmodified	_VLSERDLYR_					0	0	0		ENST00000594893.5_1_19:15511079-15529746:-|nuORF;ENST00000593845.5_1_19:15510111-15529746:-|nuORF;nc|ENSG00000011243|Q9ULX6-2|AKAP8L;ENSG00000011243|ENST00000397410|AKAP8L;AKAP8L|p.K277Efs*8|1|0.26|ENSG00000011243|chr19:15401031-15401032|TC/-|frameshift_variant	ENST00000594893.5_1_19:15511079-15529746:-|nuORF	ENST00000594893.5_1_19:15511079-15529746:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	384.61181640625	3	384.212017	1149.61422	-0.019786	-7.602E-06	0.039157	1.5045E-05	0.019371	7.4427E-06	384.2119693741298	43.016	0.60717	43.788	43.472	44.079	0.7724					15	11	2	0	0	0	0.6343	1	16049	16049		12.873	0	1	1721100			59462	994	43389	43723	57961	57961					0.04539915391978866
VLSETLYEL	9	Unmodified	_VLSETLYEL_					0	0	0		nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-SECPEP	A375_MHC_IP_R1	1	534.1873168945312	2	533.786973	1065.55939	-0.45674	-0.0002438	0.17269	9.2177E-05	-0.28405	-0.00015162	533.7867785262908	109.65	0.51111	109.65	109.42	109.93	0					14	9	2	0	0	0	0.14105	1	40244	40244		50.855	10.898	1	1828500			59463	3000	43390	43724	57962	57962					0.02923483800714166
VLSETLYEL	9	Unmodified	_VLSETLYEL_					0	0	0		nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1866455078125	2	533.786973	1065.55939	-0.69689	-0.00037199	-0.4536	-0.00024213	-1.1505	-0.00061411	533.7869222077693	108.8	0.5623	109.54	109.32	109.88	0.74684					15	10	2	0	0	0	0.089948	1	41099	41099		60.39	12.044	1	1459100			59464	3000	43390	43724	57963	57963					0.02923483800714166
VLSGKRIP	8	Unmodified	_VLSGKRIP_					0	0	0		ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	MSMS	A375_MHC_IP_R1	1	435.2821350097656	2	435.281995	868.549437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.036	1	59.036	58.536	59.536	0								0	0	0	0.16876	1	21224	21224		24.674	0	1				59465	912	43391	43725	57964	57964					0.10990385376646827
VLSGLLAVLD	10	Unmodified	_VLSGLLAVLD_					0	0	0			REV__ENSG00000150656|ENST00000358821|CNDP1	REV__ENSG00000150656|ENST00000358821|CNDP1	MULTI-SECPEP	A375_MHC_IP_R2	2	500.7076110839844	2	500.307875	998.601197	-0.50102	-0.00025066	-0.59779	-0.00029908	-1.0988	-0.00054974	500.3076690873473	64.432	0.76428	65.172	64.8	65.564	0.74022					30	14	3	0	0	0	0.56504	1	24399	24399		41.84	14.211	1	6273700	+		59466	19722	43392	43726	57965	57965					0.10184084279887884
VLSGQDDEE	9	Unmodified	_VLSGQDDEE_					0	0	0		ENST00000487841.5_1_6:166743698-166755969:-|nuORF;ENSG00000198818|ENST00000361731|SFT2D1	ENST00000487841.5_1_6:166743698-166755969:-|nuORF	ENST00000487841.5_1_6:166743698-166755969:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	496.6141357421875	2	496.214369	990.414184	-0.40074	-0.00019885	0.58107	0.00028833	0.18033	8.9481E-05	496.2146612554943	88.549	1.2099	89.281	88.875	90.085	0.7318					54	23	4	0	0	0	0.43185	1	33882	33882		23.148	9.6405	1	10145000			59467	9334	43393	43727	57966	57966					-0.0814060406628414
VLSGRLYR	8	Unmodified	_VLSGRLYR_					0	0	0		STK40|p.P249L|1|0.33|ENSG00000196182|chr1:36344258-36344258|G/A|missense_variant	STK40|p.P249L|1|0.33|ENSG00000196182|chr1:36344258-36344258|G/A|missense_variant	STK40|p.P249L|1|0.33|ENSG00000196182|chr1:36344258-36344258|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	482.69024658203125	2	482.290351	962.566149	-0.6486	-0.00031282	0.27857	0.00013435	-0.37004	-0.00017847	482.290513371511	38.055	0.35592	38.055	37.862	38.218	0					10	6	2	0	0	0	0.75805	1	12905	12905		18.135	3.5533	1	2638800			59468	29264	43394	43728	57967	57967					0.08336886262600274
VLSGRLYR	8	Unmodified	_VLSGRLYR_					0	0	0		STK40|p.P249L|1|0.33|ENSG00000196182|chr1:36344258-36344258|G/A|missense_variant	STK40|p.P249L|1|0.33|ENSG00000196182|chr1:36344258-36344258|G/A|missense_variant	STK40|p.P249L|1|0.33|ENSG00000196182|chr1:36344258-36344258|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	482.290351	962.566149	-1.2465	-0.00060116	1.2757	0.00061526	0.029231	1.4098E-05	482.29065847017495	37.001	0.40507	37.772	37.615	38.02	0.7709	-0.14145	0.00073022	NaN	18.135	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1669200			59469	29264	43394	43728							0.08336886262600274
VLSKMFDI	8	Unmodified	_VLSKMFDI_					0	0	0		nc|ENSG00000133958|Q9P2D8-2|UNC79;nc|ENSG00000133958|Q9P2D8|UNC79;nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79	nc|ENSG00000133958|Q9P2D8-2|UNC79	nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-SECPEP	A375_MHC_IP_R2	2	477.162109375	2	476.762246	951.50994	-0.39066	-0.00018625	-0.17045	-8.1264E-05	-0.56111	-0.00026752	476.76209184185564	85.316	2.2382	86.052	84.916	87.154	0.73601					109	43	3	0	0	0	0.44468	1	32342	32342		36.044	3.9272	1	5570800			59470	14608	43395	43729	57968	57968					0.03224497310930019
VLSNNRSD	8	Unmodified	_VLSNNRSD_					0	0	0			REV__WDFY3|p.S538L|1|0.39|ENSG00000163625|chr4:84820165-84820165|G/A|missense_variant	REV__WDFY3|p.S538L|1|0.39|ENSG00000163625|chr4:84820165-84820165|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	904.8890991210938	1	904.448285	903.441008	0.26639	0.00024093	2.4372	0.0022044	2.7036	0.0024453	904.4518911422433	115.22	0.86081	115.22	114.62	115.48	0					20	16	2	0	0	0	0.97144	1	42110	42110		14.582	0	1	4082800	+		59471	28992	43396	43730	57969	57969					-0.01457450664429416
VLSPADKTNVK	11	Unmodified	_VLSPADKTNVK_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;ENST00000472694.1_1_16:226715-226811:+|nuORF;ENST00000397797.1_1_16:226715-226977:+|nuORF	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-SECPEP	A375_MHC_IP_R1	1	391.6277160644531	3	391.227556	1170.66084	0.072838	2.8496E-05	0.51673	0.00020216	0.58957	0.00023066	391.22775990765854	19.714	0.7606	19.714	19.42	20.18	0					31	14	3	0	0	0	0.1406	1	4955	4955		59.177	38.306	1	4219400			59472	8913	43397	43731	57970	57970					0.08233355223273975
VLSPADKTNVK	11	Unmodified	_VLSPADKTNVK_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;ENST00000472694.1_1_16:226715-226811:+|nuORF;ENST00000397797.1_1_16:226715-226977:+|nuORF	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-SECPEP	A375_MHC_IP_R2	2	390.5897216796875	3	391.227556	1170.66084	-0.44388	-0.00017366	-0.034718	-1.3583E-05	-0.47859	-0.00018724	391.227970462112	18.914	0.20984	19.517	19.423	19.633	0.60308					9	5	3	0	0	0	0.8205	1	5669	5669		28.181	7.3101	1	5586200			59473	8913	43397	43731	57971	57971					0.08233355223273975
VLSPLQRAQ	9	Unmodified	_VLSPLQRAQ_					0	0	0		ENSG00000166889|ENST00000300146|PATL1;PATL1|p.P255S|1|0.25|ENSG00000166889|chr11:59656006-59656006|G/A|missense_variant;nc|ENSG00000166889|Q86TB9-2|PATL1	ENSG00000166889|ENST00000300146|PATL1	ENSG00000166889|ENST00000300146|PATL1	MULTI-SECPEP	A375_MHC_IP_R1	1	506.95074462890625	2	506.300916	1010.58728	-0.54848	-0.0002777	-0.031564	-1.5981E-05	-0.58004	-0.00029368	506.3008385485002	24.372	0.20243	24.372	24.245	24.447	0					5	3	2	0	0	0	0.76827	1	6932	6932		3.5965	0	1	4763600			59474	7129	43398	43732	57972	57972					0.08240851571463281
VLSPLQRAQ	9	Unmodified	_VLSPLQRAQ_					0	0	0		ENSG00000166889|ENST00000300146|PATL1;PATL1|p.P255S|1|0.25|ENSG00000166889|chr11:59656006-59656006|G/A|missense_variant;nc|ENSG00000166889|Q86TB9-2|PATL1	ENSG00000166889|ENST00000300146|PATL1	ENSG00000166889|ENST00000300146|PATL1	MULTI-MATCH	A375_MHC_IP_R2	2		2	506.300916	1010.58728	-1.005	-0.00050883	-0.12996	-6.5799E-05	-1.135	-0.00057463	506.3008175370749	23.677	0.20365	24.308	24.18	24.384	0.63014	-0.032299	-5.7249E-05	NaN	3.5965	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2428200			59475	7129	43398	43732							0.08240851571463281
VLSRHHHLVRK	11	Unmodified	_VLSRHHHLVRK_					0	0	0		ENSG00000008311|ENST00000417368|AASS	ENSG00000008311|ENST00000417368|AASS	ENSG00000008311|ENST00000417368|AASS	MULTI-MSMS	A375_MHC_IP_R1	1	691.8170776367188	2	691.418011	1380.82147	-0.97363	-0.00067318	-0.039523	-2.7327E-05	-1.0132	-0.00070051	691.4174685888289	149.09	2.1584	149.09	147.85	150	0					232	68	4	0	0	0	0.73934	1	57173	57173		0	0	1	1594100			59476	958	43399	43733	57973	57973					0.14629167450652858
VLSSIETGV	9	Unmodified	_VLSSIETGV_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-SECPEP	A375_MHC_IP_R2	2	905.1707763671875	1	904.498589	903.491313	-0.54477	-0.00049274	0.20983	0.00018979	-0.33493	-0.00030295	904.4986489412896	65.459	0.76125	66.197	65.867	66.629	0.73811					30	14	3	0	0	0	0.006701	1	24807	24807		164.52	56.518	1	11530000			59477	2483	43400	43734	57974	57974					0.035706589407254796
VLSSIETGV	9	Unmodified	_VLSSIETGV_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MATCH	A375_MHC_IP_R1	1		1	904.498589	903.491313	-0.33503	-0.00030303	0.23311	0.00021084	-0.10192	-9.2187E-05	904.4986602216941	66.26	0.71211	66.26	65.972	66.684	0	0.031064	1.113E-05	NaN	164.52	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10641000			59478	2483	43400	43734							0.035706589407254796
VLSSPLALA	9	Unmodified	_VLSSPLALA_					0	0	0		ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	MULTI-MSMS	A375_MHC_IP_R2	2	870.2996215820312	1	870.529495	869.522219	-0.53496	-0.00046569	0.21438	0.00018662	-0.32058	-0.00027907	870.5295792579957	102.03	0.91593	102.8	102.36	103.28	0.76428					45	17	4	0	0	0	0.0093345	1	38713	38713		104.8	23.186	1	25788000			59479	9274	43401	43735	57975	57975					0.0822385704559565
VLSSPLALA	9	Unmodified	_VLSSPLALA_					0	0	0		ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	MULTI-MATCH	A375_MHC_IP_R1	1		1	870.529495	869.522219	-0.24298	-0.00021152	0.48269	0.0004202	0.23971	0.00020868	870.5298142628908	102.94	1.0679	102.94	102.51	103.57	0	0.070155	8.3724E-05	NaN	104.8	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23874000			59480	9274	43401	43735							0.0822385704559565
VLSTEDQL	8	Unmodified	_VLSTEDQL_					0	0	0		IQCH|p.G773E|1|0.37|ENSG00000103599|chr15:67421390-67421390|G/A|missense_variant	IQCH|p.G773E|1|0.37|ENSG00000103599|chr15:67421390-67421390|G/A|missense_variant	IQCH|p.G773E|1|0.37|ENSG00000103599|chr15:67421390-67421390|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	905.1707763671875	1	904.462204	903.454927	-0.57683	-0.00052172	0.96969	0.00087705	0.39286	0.00035533	904.4626924908697	65.629	0.45676	66.367	66.121	66.577	0.73811					13	8	2	0	0	0	0.44468	1	24807	24807		44.407	0	1	1421200			59481	14172	43402	43736	57976	57976					-0.0006621795599812685
VLSVIKKVL	9	Unmodified	_VLSVIKKVL_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-SECPEP	A375_MHC_IP_R1	1	500.448486328125	2	499.852253	997.689953	-0.44227	-0.00022107	-0.16173	-8.0844E-05	-0.60401	-0.00030192	499.85216554038556	58.884	0.30528	58.884	58.685	58.99	0					10	5	3	0	0	0	0.78348	1	21091	21091		4.3292	2.2695	1	859140	+		59482	21486	43403	43737	57977	57977					0.19101544310228746
VLTACFSSGF	10	Unmodified	_VLTACFSSGF_					0	0	0		nc|ENSG00000283761|Q9Y2D2-2|SLC35A3;nc|ENSG00000283761|Q9Y2D2-3|SLC35A3;ENSG00000117620|ENST00000533028|SLC35A3	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	MULTI-SECPEP	A375_MHC_IP_R1	1	516.181396484375	2	516.24696	1030.47937	-0.48542	-0.00025059	0.50243	0.00025938	0.017017	8.7847E-06	516.2471661162118	43.61	0.50884	43.61	43.4	43.909	0					17	9	3	0	0	0	0.83086	1	15136	15136		6.7232	0	1	2709400			59483	14944	43404	43738	57978	57978					-0.03465281074136328
VLTAWLLQE	9	Unmodified	_VLTAWLLQE_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-MSMS	A375_MHC_IP_R1	1	536.6116943359375	2	536.8055	1071.59645	-0.60841	-0.0003266	0.019124	1.0266E-05	-0.58929	-0.00031633	537.3076400508136	62.257	1.3331	62.257	61.788	63.121	0					71	25	5	0	0	0	0.58047	1	22392	22392		15.847	1.0089	1	53723000			59484	14845	43405	43739	57979	57979					0.06351200137146407
VLTAWLLQE	9	Unmodified	_VLTAWLLQE_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	536.8055	1071.59645	-1.1909	-0.00063929	0.19418	0.00010424	-0.99674	-0.00053506	537.3077342286527	61.321	0.9575	62.066	61.769	62.726	0.74503	-0.095138	8.9191E-05	NaN	15.847	67	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56424000			59485	14845	43405	43739							0.06351200137146407
VLTEIEKML	9	Unmodified	_VLTEIEKML_					0	0	0			REV__nc|ENSG00000117385|Q32P28-4|P3H1	REV__nc|ENSG00000117385|Q32P28-4|P3H1	MULTI-SECPEP	A375_MHC_IP_R2	2	538.7081298828125	2	538.307018	1074.59948	-0.81744	-0.00044003	1.4881	0.00080108	0.67071	0.00036105	538.3081892878829	125.8	1.4629	126.1	125.47	126.93	0.2951					67	28	3	0	0	0	0.74651	1	49411	49411		13.508	0	1	38666000	+		59486	18005	43406	43740	57980	57980					0.06516707199625671
VLTEVFRSL	9	Unmodified	_VLTEVFRSL_					0	0	0			REV__ENSG00000158859|ENST00000367996|ADAMTS4	REV__ENSG00000158859|ENST00000367996|ADAMTS4	MSMS	A375_MHC_IP_R2	2	532.3474731445312	2	532.310949	1062.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.353	1	73.089	72.589	73.589	0.73541								0	0	0	0.15283	1	27456	27456		16.942	3.4344	1		+		59487	20092	43407	43741	57981	57981					0.0785460251142922
VLTGEMFAPC	10	Unmodified	_VLTGEMFAPC_					0	0	0		nc|ENSG00000188162|Q6ZRI0|OTOG;ENSG00000188162|ENST00000399397|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	MULTI-SECPEP	A375_MHC_IP_R2	2	533.7437744140625	2	534.248646	1066.48274	-0.78684	-0.00042037	-1.3788	-0.0007366	-2.1656	-0.001157	534.2475732426293	77.526	0.45781	78.268	77.908	78.365	0.74293					11	8	2	0	0	0	0.92957	1	29457	29457		6.2058	5.7474	1	738650			59488	8889	43408	43742	57982	57982					-0.047843542917689774
VLTGILEQV	9	Unmodified	_VLTGILEQV_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MSMS	A375_MHC_IP_R1	1	486.6919860839844	2	486.292225	970.569897	-0.085243	-4.1453E-05	-0.15066	-7.3266E-05	-0.23591	-0.00011472	486.2921074921198	110.46	0.61138	110.46	110.14	110.75	0					17	11	2	0	0	0	0.0028027	1	40494	40494		139.14	46.647	1	1985300			59489	1476	43409	43743	57983	57983					0.08343511245811897
VLTGILEQV	9	Unmodified	_VLTGILEQV_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MSMS	A375_MHC_IP_R2	2	486.6920166015625	2	486.292225	970.569897	-0.49244	-0.00023947	-0.06856	-3.334E-05	-0.561	-0.00027281	486.29212668022353	109.55	0.76132	110.3	109.98	110.74	0.74684					19	14	2	0	0	0	0.0014061	1	41337	41337		149.99	49.623	1	1918800			59490	1476	43409	43743	57984	57984					0.08343511245811897
VLTKWKEV	8	Unmodified	_VLTKWKEV_					0	0	0			REV__CFAP54|p.E1761K|2|0.23|ENSG00000188596|chr12:96658062-96658062|G/A|missense_variant	REV__CFAP54|p.E1761K|2|0.23|ENSG00000188596|chr12:96658062-96658062|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	501.64080810546875	2	501.80276	1001.59097	-0.6601	-0.00033124	-0.094311	-4.7325E-05	-0.75441	-0.00037857	501.80264910230403	67.089	0.45573	67.826	67.546	68.001	0.73631					19	8	3	0	0	0	0.73563	1	25391	25391		44.407	3.9584	1	2764200	+		59491	15647	43410	43744	57985	57985					0.09023521345329755
VLTKWKEV	8	Unmodified	_VLTKWKEV_					0	0	0			REV__CFAP54|p.E1761K|2|0.23|ENSG00000188596|chr12:96658062-96658062|G/A|missense_variant	REV__CFAP54|p.E1761K|2|0.23|ENSG00000188596|chr12:96658062-96658062|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	501.80276	1001.59097	-0.77659	-0.0003897	0.43267	0.00021711	-0.34393	-0.00017258	501.8028047521574	67.908	0.45428	67.908	67.704	68.159	0	0.041153	0.00030723	NaN	36.044	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2475400	+		59492	15647	43410	43744							0.09023521345329755
VLTLKRFV	8	Unmodified	_VLTLKRFV_					0	0	0		ENST00000368194.7_1_1:157014344-157014518:-|nuORF	ENST00000368194.7_1_1:157014344-157014518:-|nuORF	ENST00000368194.7_1_1:157014344-157014518:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	488.1465759277344	2	488.32112	974.627687	-0.5585	-0.00027273	-0.035766	-1.7465E-05	-0.59426	-0.00029019	488.32105532493443	48.431	0.35215	49.188	48.98	49.332	0.75737					9	6	2	0	0	0	0.94479	1	18142	18142		19.439	1.304	1	961450			59493	11109	43411	43745	57986	57986					0.13935817961896646
VLTNKLLTV	9	Unmodified	_VLTNKLLTV_					0	0	0		ENSG00000165195|ENST00000333590|PIGA	ENSG00000165195|ENST00000333590|PIGA	ENSG00000165195|ENST00000333590|PIGA	MULTI-SECPEP	A375_MHC_IP_R1	1	500.4748840332031	2	500.823692	999.632832	-0.15372	-7.6988E-05	-0.28314	-0.0001418	-0.43686	-0.00021879	500.8236322523088	71.774	0.25052	71.774	71.615	71.866	0					6	4	2	0	0	0	0.40377	1	26093	26093		28.495	0.86571	1	2105000			59494	6926	43412	43746	57987	57987					0.1330007703385263
VLTNVLVGGNT	11	Unmodified	_VLTNVLVGGNT_					0	0	0		nc|ENSG00000174227|Q5H8A4-3|PIGG;nc|ENSG00000174227|Q5H8A4-2|PIGG;ENSG00000174227|ENST00000453061|PIGG;ENST00000507493.1_1_4:514867-515974:+|nuORF;ENST00000513679.1_1_4:515547-515999:+|nuORF	nc|ENSG00000174227|Q5H8A4-3|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-SECPEP	A375_MHC_IP_R1	1	544.158203125	2	543.811313	1085.60807	-0.65173	-0.00035442	0.24134	0.00013124	-0.41039	-0.00022318	543.8113793093778	58.65	0.40588	58.65	58.43	58.836	0					17	7	3	0	0	0	0.14752	1	21040	21040		61.09	15.39	1	3267100			59495	7863	43413	43747	57988	57988					0.06869397160471635
VLTNVLVGGNT	11	Unmodified	_VLTNVLVGGNT_					0	0	0		nc|ENSG00000174227|Q5H8A4-3|PIGG;nc|ENSG00000174227|Q5H8A4-2|PIGG;ENSG00000174227|ENST00000453061|PIGG;ENST00000507493.1_1_4:514867-515974:+|nuORF;ENST00000513679.1_1_4:515547-515999:+|nuORF	nc|ENSG00000174227|Q5H8A4-3|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-SECPEP	A375_MHC_IP_R2	2	544.2106323242188	2	543.811313	1085.60807	-1.1016	-0.00059906	-0.15398	-8.3737E-05	-1.2556	-0.0006828	543.8112454168005	57.786	0.4574	58.535	58.272	58.729	0.74895					18	8	3	0	0	0	0.085682	1	21842	21842		69.338	4.1032	1	3338500			59496	7863	43413	43747	57989	57989					0.06869397160471635
VLTPRKIL	8	Unmodified	_VLTPRKIL_					0	0	0		SLC7A13|p.E268K|3|0.25|ENSG00000164893|chr8:86222987-86222987|C/T|missense_variant	SLC7A13|p.E268K|3|0.25|ENSG00000164893|chr8:86222987-86222987|C/T|missense_variant	SLC7A13|p.E268K|3|0.25|ENSG00000164893|chr8:86222987-86222987|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	470.7201843261719	2	470.32112	938.627687	-0.90957	-0.00042779	-0.084143	-3.9574E-05	-0.99371	-0.00046736	470.3210249545121	61.209	0.35225	61.954	61.769	62.121	0.74504					9	6	2	0	0	0	0.7256	1	23189	23189		26.884	2.8631	1	1365500			59497	29193	43414	43748	57990	57990					0.15591817961899324
VLTRPLASL	9	Unmodified	_VLTRPLASL_					0	0	0			REV__ENST00000511311.4_1_4:186318014-186318465:+|nuORF	REV__ENST00000511311.4_1_4:186318014-186318465:+|nuORF	MSMS	A375_MHC_IP_R2	2	485.34283447265625	2	485.30821	968.601866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.697	1	92.431	91.931	92.931	0.7345								0	0	0	0.15069	1	34876	34876		20.454	0	1		+		59498	25552	43415	43749	57991	57991					0.11630923719599195
VLTTRIKEIQR	11	Unmodified	_VLTTRIKEIQR_					0	0	0		ENSG00000144214|ENST00000308528|LYG1	ENSG00000144214|ENST00000308528|LYG1	ENSG00000144214|ENST00000308528|LYG1	MULTI-MSMS	A375_MHC_IP_R1	1	679.318603515625	2	678.919718	1355.82488	-0.93885	-0.00063741	-0.37032	-0.00025142	-1.3092	-0.00088882	678.9192687654697	137.1	0.56615	137.1	136.97	137.54	0					22	10	4	0	0	0	0.73886	1	52790	52790		1.3295	0.13619	1	5849000			59499	5469	43416	43750	57992	57992					0.1612037271402187
VLTTSNRLVVS	11	Unmodified	_VLTTSNRLVVS_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	A375_MHC_IP_R2	2	594.4265747070312	2	594.85097	1187.68739	-0.3748	-0.00022295	1.0319	0.00061383	0.65711	0.00039088	594.8511452300671	141.75	1.1731	141.78	141.1	142.28	0.030731					28	22	2	0	0	0	0.99676	1	55561	55561		1.1933	0.12188	1	1155400	+		59500	18241	43417	43751	57993	57993					0.10105044114629891
VLVADEQRVP	10	Unmodified	_VLVADEQRVP_					0	0	0		nc|ENSG00000135686|Q8N4N3-2|KLHL36;ENSG00000135686|ENST00000564996|KLHL36	nc|ENSG00000135686|Q8N4N3-2|KLHL36	nc|ENSG00000135686|Q8N4N3-2|KLHL36	MULTI-SECPEP	A375_MHC_IP_R2	2	376.63995361328125	3	375.880267	1124.61897	-0.037461	-1.4081E-05	1.1744	0.00044142	1.1369	0.00042734	376.2150476393695	19.688	0.45552	20.299	20.044	20.499	0.61029					13	8	2	0	0	0	0.92957	1	6045	6045		3.3196	2.1048	1	842200			59501	4706	43418	43752	57994	57994					0.06164799534758458
VLVALRDTV	9	Unmodified	_VLVALRDTV_					0	0	0			REV__nc|ENSG00000189350|Q6ZUX3-2|TOGARAM2	REV__nc|ENSG00000189350|Q6ZUX3-2|TOGARAM2	MULTI-SECPEP	A375_MHC_IP_R2	2	493.12042236328125	2	493.305667	984.596781	-0.80429	-0.00039676	0.096058	4.7386E-05	-0.70823	-0.00034937	493.3056751813713	58.33	0.25751	59.079	58.929	59.187	0.74894					7	4	2	0	0	0	0.4261	1	22053	22053		24.021	3.5669	1	922710	+		59502	22150	43419	43753	57995	57995					0.10386619856990364
VLVDMIWHDWW	11	Unmodified	_VLVDMIWHDWW_					0	0	0			REV__ENST00000526878.5_1_11:460175-490579:+|nuORF	REV__ENST00000526878.5_1_11:460175-490579:+|nuORF	MSMS	A375_MHC_IP_R1	1	500.4748840332031	3	500.57619	1498.70674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.709	1	99.709	99.209	100.21	0								0	0	0	0.1629	1	36632	36632		1.4551	0.24029	1		+		59503	21312	43420	43754	57996	57996					-0.022663228661485846
VLVDQTTGL	9	Unmodified	_VLVDQTTGL_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	A375_MHC_IP_R1	1	473.6669921875	2	473.266207	944.517862	-0.24906	-0.00011787	1.1501	0.00054431	0.90105	0.00042644	473.266795650623	72.061	0.55684	72.061	71.866	72.423	0					20	10	3	0	0	0	0.033557	1	26212	26212		71.922	17.149	1	5359100			59504	1401	43421	43755	57997	57997					0.04338347832026557
VLVDQTTGL	9	Unmodified	_VLVDQTTGL_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	A375_MHC_IP_R2	2	473.6586608886719	2	473.266207	944.517862	-0.80907	-0.0003829	0.66088	0.00031277	-0.14819	-7.0135E-05	473.2665637306755	71.302	0.55762	72.036	71.806	72.364	0.73421					16	10	2	0	0	0	0.029064	2	27048	27048;27069		75.761	17.149	1	4800100			59505	1401	43421	43755	57998;57999	57998					0.04338347832026557
VLVDRTIYI	9	Unmodified	_VLVDRTIYI_					0	0	0		ENSG00000132541|ENST00000254878|RIDA	ENSG00000132541|ENST00000254878|RIDA	ENSG00000132541|ENST00000254878|RIDA	MULTI-MSMS	A375_MHC_IP_R1	1	546.8582153320312	2	546.326599	1090.63865	-0.39119	-0.00021372	-0.03959	-2.1629E-05	-0.43078	-0.00023535	546.3264560692999	82.557	0.86093	82.557	82.214	83.075	0					45	16	4	0	0	0	0.074484	1	30215	30215		59.368	29.528	1	14941000			59506	4420	43422	43756	58000	58000					0.09695175545516577
VLVDRTIYI	9	Unmodified	_VLVDRTIYI_					0	0	0		ENSG00000132541|ENST00000254878|RIDA	ENSG00000132541|ENST00000254878|RIDA	ENSG00000132541|ENST00000254878|RIDA	MULTI-SECPEP	A375_MHC_IP_R2	2	546.7260131835938	2	546.326599	1090.63865	-0.86332	-0.00047165	0.22847	0.00012482	-0.63485	-0.00034683	546.3265949688546	81.703	0.81159	82.446	82.128	82.94	0.74293					41	15	4	0	0	0	0.18869	1	30992	30992		51.415	22.334	1	12709000			59507	4420	43422	43756	58001	58001					0.09695175545516577
VLVENRFY	8	Unmodified	_VLVENRFY_					0	0	0			REV__ENSG00000186310|ENST00000373079|NAP1L3	REV__ENSG00000186310|ENST00000373079|NAP1L3	MULTI-SECPEP	A375_MHC_IP_R2	2	520.6741333007812	2	520.282192	1038.54983	-0.98832	-0.00051421	0.41088	0.00021377	-0.57744	-0.00030043	520.7837815258325	29.864	0.55765	30.563	30.385	30.942	0.69872					19	10	3	0	0	0	0.86765	1	10614	10614		24.674	0	1	3296600	+		59508	21962	43423	43757	58002	58002					0.032097603058673485
VLVESEHQV	9	Unmodified	_VLVESEHQV_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-SECPEP	A375_MHC_IP_R1	1	520.6739501953125	2	520.274564	1038.53457	-0.70881	-0.00036878	-0.040886	-2.1272E-05	-0.7497	-0.00039005	520.2745594466905	30.929	0.66018	30.929	30.754	31.414	0					22	12	3	0	0	0	0.087712	1	9870	9870		66.457	52.551	1	6576700			59509	6535	43424	43758	58003	58003					0.016848487179913718
VLVESEHQV	9	Unmodified	_VLVESEHQV_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-SECPEP	A375_MHC_IP_R2	2	520.6741333007812	2	520.274564	1038.53457	-0.69937	-0.00036386	0.21481	0.00011176	-0.48456	-0.0002521	520.274568421034	30.232	0.50731	30.95	30.759	31.266	0.71857					23	9	3	0	0	0	0.16764	1	10614	10614		60.074	21.898	1	5230100			59510	6535	43424	43758	58004	58004					0.016848487179913718
VLVESRQSL	9	Unmodified	_VLVESRQSL_					0	0	0			REV__nc|ENSG00000170909|Q8IYS5-6|OSCAR	REV__nc|ENSG00000170909|Q8IYS5-6|OSCAR	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1821899414062	2	515.798206	1029.58186	-0.53156	-0.00027418	3.2436	0.0016731	2.7121	0.0013989	515.7986074905479	60.299	0.76313	60.299	59.803	60.566	0					30	14	4	0	0	0	0.62767	1	21546	21546		7.2892	0	1	1393700	+		59511	21031	43425	43759	58005	58005					0.06825127989009161
VLVESRQSL	9	Unmodified	_VLVESRQSL_					0	0	0			REV__nc|ENSG00000170909|Q8IYS5-6|OSCAR	REV__nc|ENSG00000170909|Q8IYS5-6|OSCAR	MULTI-MATCH	A375_MHC_IP_R2	2		2	515.798206	1029.58186	-1.1668	-0.00060186	2.5608	0.0013208	1.3939	0.00071899	515.7981788472489	59.408	0.55486	60.156	59.845	60.4	0.74714	-0.071725	-0.00039467	NaN	7.2892	21	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1511000	+		59512	21031	43425	43759							0.06825127989009161
VLVGRRRA	8	Unmodified	_VLVGRRRA_					0	0	0			REV__ENST00000344575.4_1_7:72848585-72849218:+|nuORF	REV__ENST00000344575.4_1_7:72848585-72849218:+|nuORF	MSMS	A375_MHC_IP_R2	2	463.7007141113281	2	463.80396	925.593367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.66	1	142.69	142.19	143.19	0.030731								0	0	0	0.16876	1	55770	55770		0.79363	0	1		+		59513	23761	43426	43760	58006	58006					0.1275941459364276
VLVGSEVIGF	10	Unmodified	_VLVGSEVIGF_					0	0	0			REV__nc|ENSG00000290649|Q8NH63|OR51H1	REV__nc|ENSG00000290649|Q8NH63|OR51H1	MULTI-SECPEP	A375_MHC_IP_R1	1	509.68963623046875	2	510.292225	1018.5699	-0.83075	-0.00042392	0.029353	1.4979E-05	-0.80139	-0.00040895	510.29203471667114	68.139	0.76271	68.139	67.955	68.717	0					19	14	3	0	0	0	0.76414	1	24812	24812		10.074	0	1	1911400	+		59514	27558	43427	43761	58007	58007					0.061355112458159056
VLVIIIILKKR	11	Unmodified	_VLVIIIILKKR_					0	0	0			REV__ENSG00000166900|ENST00000337979|STX3	REV__ENSG00000166900|ENST00000337979|STX3	MSMS	A375_MHC_IP_R2	2	654.437744140625	2	654.478683	1306.94281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.998	1	95.749	95.249	96.249	0.75045								0	0	0	0.1636	1	36093	36093		0	0	1		+		59515	20715	43428	43762	58008	58008					0.3016197704064325
VLVKRLAKKV	10	Unmodified	_VLVKRLAKKV_					0	0	0			REV__OR8D1|p.G307E|6|0.32|ENSG00000196341|chr11:124309847-124309847|C/T|missense_variant	REV__OR8D1|p.G307E|6|0.32|ENSG00000196341|chr11:124309847-124309847|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	577.4317626953125	2	577.410801	1152.80705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.93	1	147.93	147.43	148.43	0								0	0	0	0.15642	1	56504	56504		0	0	1		+		59516	22183	43429	43763	58009	58009					0.23675702249806818
VLVLISQTV	9	Unmodified	_VLVLISQTV_					0	0	0			REV__nc|ENSG00000180663|Q9BXE9|VN1R3	REV__nc|ENSG00000180663|Q9BXE9|VN1R3	MSMS	A375_MHC_IP_R2	2	486.43536376953125	2	486.310418	970.606283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.767	1	89.499	88.999	89.999	0.7318								0	0	0	0.15069	1	33782	33782		20.454	0	1		+		59517	27388	43430	43764	58010	58010					0.11980388142524134
VLVLLKLKKLV	11	Unmodified	_VLVLLKLKKLV_					0	0	0			REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF	REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF	MSMS	A375_MHC_IP_R1	1	633.45751953125	2	633.467784	1264.92102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.057	1	84.057	83.557	84.557	0								0	0	0	0.16331	1	30778	30778		1.4819	0	1		+		59518	23071	43431	43765	58011	58011					0.29915172292066927
VLVLLLPKG	9	Unmodified	_VLVLLLPKG_					0	0	0		ENST00000473592.1_1_10:43048038-43048095:-|nuORF	ENST00000473592.1_1_10:43048038-43048095:-|nuORF	ENST00000473592.1_1_10:43048038-43048095:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	952.1241455078125	1	951.660116	950.652839	0.24795	0.00023596	-2.999	-0.002854	-2.7511	-0.0026181	951.6593272516428	117.41	0.15207	117.41	117.31	117.46	0					4	2	2	0	0	0	0.8028	1	43097	43097		1.8442	1.3859	1	1808700			59519	12392	43432	43766	58012	58012					0.1755387276446072
VLVLLLRVLLL	11	Unmodified	_VLVLLLRVLLL_					0	0	0		ENST00000378944.9_1_19:36276198-36277438:+|nuORF	ENST00000378944.9_1_19:36276198-36277438:+|nuORF	ENST00000378944.9_1_19:36276198-36277438:+|nuORF	MSMS	A375_MHC_IP_R1	1	632.4693603515625	2	632.459959	1262.90537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.087	1	83.087	82.587	83.587	0								0	0	0	0.1635	1	30396	30396		1.4819	0	1				59520	11320	43433	43767	58013	58013					0.28442885775029936
VLVLLPLPIVL	11	Unmodified	_VLVLLPLPIVL_					0	0	0		ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	MSMS	A375_MHC_IP_R1	1	595.0115356445312	2	594.920135	1187.82572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.984	1	85.984	85.484	86.484	0								0	0	0	0.1636	1	31520	31520		0	0	1				59521	1744	43434	43768	58014	58014					0.23931819101017027
VLVLVTARR	9	Unmodified	_VLVLVTARR_					0	0	0			REV__ENSG00000168398|ENST00000554311|BDKRB2	REV__ENSG00000168398|ENST00000554311|BDKRB2	MULTI-MSMS	A375_MHC_IP_R2	2	1027.078125	1	1026.67823	1025.67095	0.22596	0.00023199	-0.28529	-0.0002929	-0.059328	-6.0911E-05	1026.6777781262456	147.72	0.2294	147.74	147.64	147.87	0.019333					38	17	3	0	0	0	0.77827	1	57404	57404		0	0	1	226170	+		59522	20852	43435	43769	58015	58015					0.1591400773913847
VLVLVTARR	9	Unmodified	_VLVLVTARR_					0	0	0			REV__ENSG00000168398|ENST00000554311|BDKRB2	REV__ENSG00000168398|ENST00000554311|BDKRB2	MULTI-SECPEP	A375_MHC_IP_R2	2	514.2422485351562	2	513.842751	1025.67095	-0.56821	-0.00029197	-0.22566	-0.00011595	-0.79387	-0.00040792	513.8424804227994	147.69	0.24161	147.71	147.64	147.88	0.019913					33	18	2	0	0	0	0.81896	1	57412	57412		0	0	1	152710	+		59523	20852	43435	43769	58016	58016					0.1591400773913847
VLVMMLHAV	9	Unmodified	_VLVMMLHAV_					0	0	0			REV__ENST00000440082.5_1_7:30536264-30536414:-|nuORF	REV__ENST00000440082.5_1_7:30536264-30536414:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	506.3580627441406	2	506.787741	1011.56093	-0.76899	-0.00038972	-0.77533	-0.00039293	-1.5443	-0.00078264	506.78711099963874	72.894	0.45792	73.63	73.429	73.887	0.7354					13	8	2	0	0	0	0.64653	1	27708	27708		14.582	1.5392	1	1145400	+		59524	24795	43436	43770	58017	58017					0.055611230841350334
VLVPQEIIDR	10	Unmodified	_VLVPQEIIDR_					0	0	0			REV__ENST00000549378.5_1_12:62860945-62902293:+|nuORF	REV__ENST00000549378.5_1_12:62860945-62902293:+|nuORF	MSMS	A375_MHC_IP_R1	1	394.6102600097656	3	394.567801	1180.68157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.983	1	32.983	32.483	33.483	0								0	0	0	0.15246	1	10712	10712		12.856	3.0917	1		+		59525	16454	43437	43771	58018	58018					0.0984594560293317
VLVPVAQLK	9	Unmodified	_VLVPVAQLK_					0	0	0		nc|ENSG00000167695|Q8TBR7-1|TLCD3A	nc|ENSG00000167695|Q8TBR7-1|TLCD3A	nc|ENSG00000167695|Q8TBR7-1|TLCD3A	MULTI-SECPEP	A375_MHC_IP_R1	1	967.0632934570312	1	966.634629	965.627353	0.56522	0.00054636	-2.1904	-0.0021173	-1.6252	-0.0015709	966.6342998635068	114.7	0.96101	114.7	114.31	115.27	0					29	18	2	0	0	0	0.75466	1	42068	42068		4.3292	0	1	5784900			59526	14750	43438	43772	58019	58019					0.143163982420333
VLVPVLVMV	9	Oxidation (M)	_VLVPVLVM(Oxidation (M))V_		VLVPVLVM(1)V		VLVPVLVM(94)V	0	0	1		ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2;ENST00000494614.5_1_3:98520348-98531278:-|nuORF;ENST00000470393.1_1_3:98526911-98531458:-|nuORF	ENSG00000057019|ENST00000326840|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	MULTI-MSMS	A375_MHC_IP_R2	2	493.2108459472656	2	492.811739	983.608925	-0.55556	-0.00027379	-0.5504	-0.00027124	-1.106	-0.00054503	492.81141755420015	129.2	0.30301	129.44	129.31	129.62	0.23946					10	5	3	0	0	0	0.011986	1	50804	50804		93.763	26.35	1	4843500			59527	1280	43439	43773	58020	58020		30			0.11646520275826333
VLVPVLVMV	9	Oxidation (M)	_VLVPVLVM(Oxidation (M))V_					0	0	1		ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2;ENST00000494614.5_1_3:98520348-98531278:-|nuORF;ENST00000470393.1_1_3:98526911-98531458:-|nuORF	ENSG00000057019|ENST00000326840|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	MULTI-MATCH	A375_MHC_IP_R1	1		2	492.811739	983.608925	-0.51467	-0.00025363	0.29245	0.00014412	-0.22221	-0.00010951	492.8118726521574	129.47	0.20256	129.47	129.35	129.55	0	0.016935	0.0003955	NaN	93.763	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4827500			59528	1280	43439	43773				30			0.11646520275826333
VLVRLPIALVL	11	Unmodified	_VLVRLPIALVL_					0	0	0			REV__ENSG00000205808|ENST00000381883|PLPP6	REV__ENSG00000205808|ENST00000381883|PLPP6	MSMS	A375_MHC_IP_R1	1	603.4356689453125	2	603.420834	1204.82712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.47	1	92.47	91.97	92.97	0								0	0	0	0.16331	1	33984	33984		1.4819	0	1		+		59529	22585	43440	43774	58021	58021					0.23289453189772757
VLVTFPKEERK	11	Unmodified	_VLVTFPKEERK_					0	0	0		ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17	ENSG00000132466|ENST00000358602|ANKRD17	ENSG00000132466|ENST00000358602|ANKRD17	MULTI-MSMS	A375_MHC_IP_R2	2	673.7951049804688	2	673.395544	1344.77654	-0.73506	-0.00049498	-0.13798	-9.2918E-05	-0.87304	-0.0005879	673.3955377479269	75.547	0.35878	76.287	76.078	76.436	0.74052					10	6	2	0	0	0	0.62292	1	28700	28700		21.537	8.4945	1	1987700			59530	4411	43441	43775	58022	58022					0.11793879074093638
VLVTFPKEERK	11	Unmodified	_VLVTFPKEERK_					0	0	0		ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17	ENSG00000132466|ENST00000358602|ANKRD17	ENSG00000132466|ENST00000358602|ANKRD17	MULTI-MATCH	A375_MHC_IP_R1	1		2	673.395544	1344.77654	-0.69843	-0.00047032	0.31915	0.00021491	-0.37929	-0.00025541	673.3953266837553	76.369	0.35331	76.369	76.168	76.522	0	0.041192	0.00033766	NaN	21.537	16	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1751800			59531	4411	43441	43775							0.11793879074093638
VLVTFPKEERK	11	Unmodified	_VLVTFPKEERK_					0	0	0		ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17	ENSG00000132466|ENST00000358602|ANKRD17	ENSG00000132466|ENST00000358602|ANKRD17	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	673.395544	1344.77654	-0.73506	-0.00049498	-0.13798	-9.2918E-05	-0.87304	-0.0005879	673.3955377479269	75.547	0.35878	76.287	76.078	76.436	0.74052	-0.041192	-0.000278	NaN	21.537	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1987700			59532	4411	43441	43775							0.11793879074093638
VLVVNKFYQ	9	Unmodified	_VLVVNKFYQ_					0	0	0			REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	MULTI-SECPEP	A375_MHC_IP_R2	2	555.6663208007812	2	555.321317	1108.62808	-0.94624	-0.00052547	0.52791	0.00029316	-0.41832	-0.0002323	555.3215636007875	54.796	0.30726	55.547	55.37	55.678	0.75075					9	5	2	0	0	0	0.75466	1	20625	20625		4.3292	0	1	967070	+		59533	19606	43442	43776	58023	58023					0.07811192891063001
VLVVVSRSF	9	Unmodified	_VLVVVSRSF_					0	0	0			REV__ENST00000296215.7_2_1:38003034-38003172:-|nuORF	REV__ENST00000296215.7_2_1:38003034-38003172:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	503.647705078125	2	503.30821	1004.60187	-0.77567	-0.0003904	0.51451	0.00025896	-0.26117	-0.00013145	503.30829412559524	67.929	0.50481	67.929	67.654	68.159	0					15	9	2	0	0	0	0.50702	1	24625	24625		25.399	0	1	1746700	+		59534	23386	43443	43777	58024	58024					0.09974923719619255
VLVYPDLCFM	10	Unmodified	_VLVYPDLCFM_					0	0	0			REV__nc|ENSG00000143379|Q15047-3|SETDB1	REV__nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-SECPEP	A375_MHC_IP_R1	1	400.612060546875	3	400.532823	1198.57664	-0.1589	-6.3643E-05	-2.0732	-0.00083038	-2.2321	-0.00089402	400.86611797286673	39.309	0.40584	39.309	39.085	39.491	0					11	7	2	0	0	0	0.93216	1	13466	13466		10.151	2.6735	1	1894600	+		59535	19352	43444	43778	58025	58025					-0.014706351895029002
VLWDQYHNL	9	Unmodified	_VLWDQYHNL_					0	0	0		ENSG00000140943|ENST00000343411|MBTPS1	ENSG00000140943|ENST00000343411|MBTPS1	ENSG00000140943|ENST00000343411|MBTPS1	MULTI-SECPEP	A375_MHC_IP_R1	1	593.7161865234375	2	594.29583	1186.57711	-0.27263	-0.00016203	0.43444	0.00025819	0.16181	9.6163E-05	594.2955465875614	82.781	0.35344	82.781	82.571	82.924	0					13	6	3	0	0	0	0.36673	1	30289	30289		41.84	21.386	1	2934000			59536	5194	43445	43779	58026	58026					-0.008717561537650909
VLWDQYHNL	9	Unmodified	_VLWDQYHNL_					0	0	0		ENSG00000140943|ENST00000343411|MBTPS1	ENSG00000140943|ENST00000343411|MBTPS1	ENSG00000140943|ENST00000343411|MBTPS1	MULTI-SECPEP	A375_MHC_IP_R2	2	593.7174072265625	2	594.29583	1186.57711	-0.61222	-0.00036384	0.81843	0.00048639	0.20621	0.00012255	594.295869287341	82.094	0.35727	82.837	82.634	82.992	0.74294					17	6	3	0	0	0	0.46121	1	31175	31175		34.402	11.665	1	2349000			59537	5194	43445	43779	58027	58027					-0.008717561537650909
VLWDRTFSL	9	Unmodified	_VLWDRTFSL_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-SECPEP	A375_MHC_IP_R1	1	569.2081909179688	2	568.808574	1135.60259	-0.15183	-8.636E-05	0.10034	5.7076E-05	-0.051484	-2.9284E-05	568.8085580753694	110.06	1.0172	110.06	109.73	110.75	0					50	19	4	0	0	0	0.10495	1	40325	40325		74.2	41.894	1	29940000			59538	3306	43446	43780	58028	58028					0.04021718368676375
VLWDRTFSL	9	Unmodified	_VLWDRTFSL_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-SECPEP	A375_MHC_IP_R2	2	568.6895751953125	2	568.808574	1135.60259	-0.25585	-0.00014553	0.036502	2.0763E-05	-0.21935	-0.00012477	568.8084890707819	109.26	0.86289	110.01	109.62	110.48	0.74684					47	16	4	0	0	0	0.021951	1	41279	41279		114.19	60.354	1	26064000			59539	3306	43446	43780	58029	58029					0.04021718368676375
VLWELKKPF	9	Unmodified	_VLWELKKPF_					0	0	0		ADH1C|p.S23F|1|0.29|ENSG00000248144|chr4:99347797-99347797|G/A|missense_variant;ADH1A|p.S23F|1|0.36|ENSG00000187758|chr4:99287616-99287616|G/A|missense_variant;ENSG00000248144|ENST00000515683|ADH1C;ENSG00000187758|ENST00000209668|ADH1A	ADH1C|p.S23F|1|0.29|ENSG00000248144|chr4:99347797-99347797|G/A|missense_variant	ADH1C|p.S23F|1|0.29|ENSG00000248144|chr4:99347797-99347797|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	387.63348388671875	3	387.233982	1158.68012	-0.34125	-0.00013214	-0.4963	-0.00019218	-0.83755	-0.00032433	387.5681359338108	36.34	0.50853	37.111	36.901	37.41	0.7709					18	9	3	0	0	0	0.41879	1	13260	13260		23.79	2.9186	1	4678800			59540	75	43447	43781	58030	58030					0.10712356304838977
VLWELKKPF	9	Unmodified	_VLWELKKPF_					0	0	0		ADH1C|p.S23F|1|0.29|ENSG00000248144|chr4:99347797-99347797|G/A|missense_variant;ADH1A|p.S23F|1|0.36|ENSG00000187758|chr4:99287616-99287616|G/A|missense_variant;ENSG00000248144|ENST00000515683|ADH1C;ENSG00000187758|ENST00000209668|ADH1A	ADH1C|p.S23F|1|0.29|ENSG00000248144|chr4:99347797-99347797|G/A|missense_variant	ADH1C|p.S23F|1|0.29|ENSG00000248144|chr4:99347797-99347797|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	387.233982	1158.68012	-0.34125	-0.00013214	-0.4963	-0.00019218	-0.83755	-0.00032433	387.5681359338108	36.34	0.50853	37.111	36.901	37.41	0.7709	-0.18104	7.5642E-05	NaN	23.79	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4678800			59541	75	43447	43781							0.10712356304838977
VLWFWWLEYYY	11	Unmodified	_VLWFWWLEYYY_					0	0	0			REV__nc|ENSG00000166272|Q9NX94|WBP1L	REV__nc|ENSG00000166272|Q9NX94|WBP1L	MSMS	A375_MHC_IP_R1	1	556.6561889648438	3	556.602622	1666.78604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.451	1	59.451	58.951	59.951	0								0	0	0	0.1635	1	21385	21385		0.50596	0	1		+		59542	20665	43448	43782	58031	58031					-0.020683526403445285
VLWGGVGT	8	Unmodified	_VLWGGVGT_					0	0	0		ENST00000584717.1_1_17:80059400-80059487:-|nuORF	ENST00000584717.1_1_17:80059400-80059487:-|nuORF	ENST00000584717.1_1_17:80059400-80059487:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	395.1189880371094	2	394.718696	787.422839	0.053693	2.1194E-05	0.68635	0.00027091	0.74004	0.00029211	394.7188858127359	63.394	0.51122	63.394	63.121	63.632	0					13	9	2	0	0	0	0.77781	1	22953	22953		2.8892	0	1	1163600			59543	13709	43449	43783	58032	58032					0.020624591515343127
VLWHLPAVPA	10	Unmodified	_VLWHLPAVPA_					0	0	0		nc|ENSG00000175505|Q9UBD9-2|CLCF1;ENSG00000175505|ENST00000312438|CLCF1	nc|ENSG00000175505|Q9UBD9-2|CLCF1	nc|ENSG00000175505|Q9UBD9-2|CLCF1	MULTI-MSMS	A375_MHC_IP_R1	1	552.6905517578125	2	551.824027	1101.6335	-0.4328	-0.00023883	-0.25186	-0.00013898	-0.68466	-0.00037781	551.8238754666619	105.57	1.2195	105.57	105.05	106.27	0					54	23	3	0	0	0	0.70334	1	38677	38677		18.135	5.0925	1	10557000			59544	7966	43450	43784	58033	58033					0.08674916473569283
VLWHLPAVPA	10	Unmodified	_VLWHLPAVPA_					0	0	0		nc|ENSG00000175505|Q9UBD9-2|CLCF1;ENSG00000175505|ENST00000312438|CLCF1	nc|ENSG00000175505|Q9UBD9-2|CLCF1	nc|ENSG00000175505|Q9UBD9-2|CLCF1	MULTI-SECPEP	A375_MHC_IP_R2	2	552.2235717773438	2	551.824027	1101.6335	-0.71713	-0.00039573	-0.18905	-0.00010432	-0.90618	-0.00050005	551.8238653792362	104.65	1.1723	105.41	104.95	106.12	0.76308					54	22	4	0	0	0	0.37407	1	39522	39522		49.669	36.161	1	11446000			59545	7966	43450	43784	58034	58034					0.08674916473569283
VLWLDEIQGG	10	Unmodified	_VLWLDEIQGG_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	377.5747985839844	3	377.201118	1128.58152	-0.089118	-3.3615E-05	0.90299	0.00034061	0.81387	0.00030699	377.5357803494044	38.806	0.76606	39.58	39.25	40.016	0.77451					24	14	3	0	0	0	0.91909	1	14225	14225		12.175	9.922	1	1839400			59546	5172	43451	43785	58035	58035					0.02237708269126415
VLWPESISV	9	Unmodified	_VLWPESISV_					0	0	0		nc|ENSG00000077238|P24394-3|IL4R;ENSG00000077238|ENST00000395762|IL4R	nc|ENSG00000077238|P24394-3|IL4R	nc|ENSG00000077238|P24394-3|IL4R	MULTI-MSMS	A375_MHC_IP_R2	2	515.68359375	2	515.2844	1028.55425	-0.73967	-0.00038114	-0.49276	-0.00025391	-1.2324	-0.00063505	515.2841982439834	124.34	0.25147	124.67	124.6	124.85	0.32969					7	4	2	0	0	0	0.0096264	1	48146	48146		109.63	31.645	1	11674000			59547	1650	43452	43786	58036	58036					0.04111224728740126
VLWPESISV	9	Unmodified	_VLWPESISV_					0	0	0		nc|ENSG00000077238|P24394-3|IL4R;ENSG00000077238|ENST00000395762|IL4R	nc|ENSG00000077238|P24394-3|IL4R	nc|ENSG00000077238|P24394-3|IL4R	MULTI-MATCH	A375_MHC_IP_R1	1		2	515.2844	1028.55425	-0.70356	-0.00036253	-0.3688	-0.00019004	-1.0724	-0.00055257	515.2840474588752	124.97	0.25124	124.97	124.85	125.1	0	0.14941	9.1207E-05	NaN	109.63	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24140000			59548	1650	43452	43786							0.04111224728740126
VLWPYLSGF	9	Unmodified	_VLWPYLSGF_					0	0	0		ENST00000523415.5_1_8:566458-566569:-|nuORF	ENST00000523415.5_1_8:566458-566569:-|nuORF	ENST00000523415.5_1_8:566458-566569:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	360.61328125	3	361.195416	1080.56442	-0.20615	-7.4461E-05	-0.54914	-0.00019835	-0.75529	-0.00027281	361.19518281722594	38.143	0.50898	38.143	37.862	38.371	0					18	9	3	0	0	0	0.77901	1	13009	13009		2.9952	2.9952	1	4375400			59549	13043	43453	43787	58037	58037					0.027358324540045942
VLYAFRIL	8	Unmodified	_VLYAFRIL_					0	0	0		nc|ENSG00000283703|P0DP72|VSIG10L2;ENSG00000283703|ENST00000686984|VSIG10L2	nc|ENSG00000283703|P0DP72|VSIG10L2	nc|ENSG00000283703|P0DP72|VSIG10L2	MULTI-SECPEP	A375_MHC_IP_R1	1	498.2057189941406	2	497.807845	993.601138	0.19634	9.7738E-05	-2.7267	-0.0013574	-2.5303	-0.0012596	497.8055068116516	44.847	0.45541	44.847	44.575	45.03	0					23	8	4	0	0	0	0.96296	1	15700	15700		2.5775	0	1	2358800			59550	10050	43454	43788	58038	58038					0.10408129070572159
VLYDNMYVS	9	Unmodified	_VLYDNMYVS_					0	0	0			REV__ENST00000473414.5_1_3:149458515-149458710:-|nuORF	REV__ENST00000473414.5_1_3:149458515-149458710:-|nuORF	MSMS	A375_MHC_IP_R2	2	552.2235717773438	2	552.257525	1102.5005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.46	1	105.22	104.72	105.72	0.76308								0	0	0	0.15486	1	39522	39522		8.5933	0.68312	1		+		59551	25150	43455	43789	58039	58039					-0.04665315765282685
VLYDPLKRV	9	Unmodified	_VLYDPLKRV_					0	0	0		ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;ENST00000540135.5_1_18:33709896-33719635:+|nuORF;ENST00000535488.5_1_18:33709896-33718439:+|nuORF;ENST00000541190.5_1_18:33709896-33716400:+|nuORF	ENSG00000134759|ENST00000358232|ELP2	ENSG00000134759|ENST00000358232|ELP2	MULTI-MSMS	A375_MHC_IP_R1	1	368.2769775390625	3	368.225486	1101.65463	0.32256	0.00011878	0.21191	7.8029E-05	0.53447	0.0001968	368.2254485065163	55.666	0.61036	55.666	55.431	56.041	0					23	11	3	0	0	0	0.21241	2	19962	19926;19962		37.075	23.46	1	6409900			59552	4605	43456	43790	58040;58041	58041					0.10786881782405544
VLYDPLKRV	9	Unmodified	_VLYDPLKRV_					0	0	0		ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;ENST00000540135.5_1_18:33709896-33719635:+|nuORF;ENST00000535488.5_1_18:33709896-33718439:+|nuORF;ENST00000541190.5_1_18:33709896-33716400:+|nuORF	ENSG00000134759|ENST00000358232|ELP2	ENSG00000134759|ENST00000358232|ELP2	MULTI-MSMS	A375_MHC_IP_R2	2	368.625244140625	3	368.225486	1101.65463	0.039952	1.4711E-05	0.093535	3.4442E-05	0.13349	4.9153E-05	368.2254581666046	54.798	0.71151	55.549	55.118	55.83	0.75075					24	13	3	0	0	0	0.37338	2	20658	20631;20658		26.021	12.406	1	6558300			59553	4605	43456	43790	58042;58043	58043					0.10786881782405544
VLYDQPRHV	9	Unmodified	_VLYDQPRHV_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	A375_MHC_IP_R1	1	376.6048278808594	3	376.204974	1125.59309	0.0092871	3.4939E-06	-0.21957	-8.2604E-05	-0.21029	-7.911E-05	376.20481050692945	26.526	0.81127	26.526	26.017	26.828	0					39	15	5	0	0	0	0.14659	1	7913	7913		42.312	26.163	1	11199000			59554	8598	43457	43791	58044	58044					0.035319500831292316
VLYDQPRHV	9	Unmodified	_VLYDQPRHV_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	A375_MHC_IP_R2	2	376.93890380859375	3	376.204974	1125.59309	-0.19131	-7.1971E-05	-0.20516	-7.718E-05	-0.39646	-0.00014915	376.2049024769017	25.95	0.45839	26.61	26.449	26.907	0.65992					23	8	3	0	0	0	0.084766	2	8719	8680;8719		53.404	35.961	1	12161000			59555	8598	43457	43791	58045;58046	58046					0.035319500831292316
VLYEKDIQLF	10	Unmodified	_VLYEKDIQLF_					0	0	0		ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000514047.1_1_5:24171013-24171163:+|nuORF	ENSG00000166971|ENST00000394657|AKTIP	ENSG00000166971|ENST00000394657|AKTIP	MULTI-MSMS	A375_MHC_IP_R2	2	635.2506103515625	2	634.350271	1266.68599	-0.98792	-0.00062669	-0.24551	-0.00015574	-1.2334	-0.00078243	634.3502203125927	97.193	0.50873	97.949	97.67	98.178	0.75586					22	9	3	0	0	0	0.61662	1	36904	36904		29.082	16.55	1	4028500			59556	7144	43458	43792	58047	58047					0.06331410025836703
VLYENALKL	9	Unmodified	_VLYENALKL_					0	0	0		FHOD1|p.G581Efs*47|1|0.35|ENSG00000135723|chr16:67233961-67233961|C/-|frameshift_variant;ENSG00000135723|ENST00000258201|FHOD1;ENST00000561922.1_1_16:67270489-67272168:-|nuORF	FHOD1|p.G581Efs*47|1|0.35|ENSG00000135723|chr16:67233961-67233961|C/-|frameshift_variant	FHOD1|p.G581Efs*47|1|0.35|ENSG00000135723|chr16:67233961-67233961|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	531.7930297851562	2	531.813325	1061.6121	-0.6167	-0.00032797	-1.0507	-0.00055875	-1.6673	-0.00088672	531.8128860649717	79.784	0.40923	80.529	80.35	80.759	0.74474					14	6	4	0	0	0	0.38603	1	30254	30254		25.399	0	1	1856500			59557	4708	43459	43793	58048	58048					0.08375486654176711
VLYGAVALIV	10	Unmodified	_VLYGAVALIV_					0	0	0		ENSG00000184999|ENST00000332793|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	MULTI-SECPEP	A375_MHC_IP_R1	1	509.7023620605469	2	509.320786	1016.62702	-0.35584	-0.00018124	-0.54497	-0.00027757	-0.90082	-0.0004588	509.32057927163675	97.713	0.45937	97.713	97.54	97.999	0					10	8	2	0	0	0	0.67143	1	35949	35949		24.674	0	1	738500			59558	8628	43460	43794	58049	58049					0.11936978522180652
VLYLRQVGY	9	Unmodified	_VLYLRQVGY_					0	0	0		ENST00000311895.7_1_16:14015972-14016038:+|nuORF	ENST00000311895.7_1_16:14015972-14016038:+|nuORF	ENST00000311895.7_1_16:14015972-14016038:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	556.218505859375	2	555.818941	1109.62333	-0.20069	-0.00011155	0.15502	8.6163E-05	-0.045676	-2.5387E-05	555.818892371315	69.171	0.45695	69.171	68.92	69.377	0					19	8	3	0	0	0	0.37663	1	25075	25075		48.346	20.173	1	4582600			59559	10633	43461	43795	58050	58050					0.0729030874831551
VLYLRQVGY	9	Unmodified	_VLYLRQVGY_					0	0	0		ENST00000311895.7_1_16:14015972-14016038:+|nuORF	ENST00000311895.7_1_16:14015972-14016038:+|nuORF	ENST00000311895.7_1_16:14015972-14016038:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	556.1841430664062	2	555.818941	1109.62333	-0.66104	-0.00036742	0.08228	4.5733E-05	-0.57876	-0.00032169	555.8189138520734	68.36	0.65843	69.095	68.816	69.474	0.73511					26	12	3	0	0	0	0.20451	1	25867	25867		54.774	26.6	1	4311000			59560	10633	43461	43795	58051	58051					0.0729030874831551
VLYNESLQL	9	Unmodified	_VLYNESLQL_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-SECPEP	A375_MHC_IP_R1	1	540.1737670898438	2	539.792589	1077.57063	-0.59024	-0.0003186	0.14837	8.009E-05	-0.44186	-0.00023851	539.792671702043	97.974	0.55878	97.974	97.691	98.25	0					13	10	2	0	0	0	0.28216	1	36040	36040		49.933	0	1	2360700			59561	6157	43462	43796	58052	58052					0.03494305894855643
VLYNESLQL	9	Unmodified	_VLYNESLQL_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-SECPEP	A375_MHC_IP_R2	2	540.1922607421875	2	539.792589	1077.57063	-1.0447	-0.0005639	0.44189	0.00023853	-0.60276	-0.00032537	539.792735756158	97.199	0.561	97.955	97.72	98.281	0.75586					19	10	3	0	0	0	0.16676	1	36915	36915		58.679	0	1	1935300			59562	6157	43462	43796	58053	58053					0.03494305894855643
VLYVFFFPV	9	Unmodified	_VLYVFFFPV_					0	0	0			REV__ENSG00000183269|ENST00000537935|OR52E8	REV__ENSG00000183269|ENST00000537935|OR52E8	MULTI-MSMS	A375_MHC_IP_R1	1	565.7039794921875	2	565.817879	1129.6212	-0.55471	-0.00031386	2.8035	0.0015863	2.2488	0.0012724	565.8193948156637	80.713	0.40479	80.713	80.441	80.846	0					11	7	2	0	0	0	0.67332	1	29459	29459		14.582	5.1986	1	732540	+		59563	21745	43463	43797	58054	58054					0.06157880010528061
VLYVTFCHIW	10	Unmodified	_VLYVTFCHIW_					0	0	0			REV__ENSG00000180269|ENST00000570682|GPR139	REV__ENSG00000180269|ENST00000570682|GPR139	MULTI-SECPEP	A375_MHC_IP_R1	1	427.9543151855469	3	427.554727	1279.64235	-0.23001	-9.8343E-05	-1.1642	-0.00049775	-1.3942	-0.00059609	427.55418446285654	25.536	0.40815	25.536	25.357	25.765	0					18	7	4	0	0	0	0.91328	1	7513	7513		12.873	0	1	4234500	+		59564	21603	43464	43798	58055	58055					0.013715220477251933
VMAGDIYSV	9	Oxidation (M)	_VM(Oxidation (M))AGDIYSV_		VM(1)AGDIYSV		VM(67)AGDIYSV	0	0	1		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-SECPEP	A375_MHC_IP_R1	1	486.131103515625	2	485.731143	969.447733	-0.54695	-0.00026567	0.80554	0.00039127	0.25859	0.0001256	485.7313844997786	67.097	0.86902	67.097	66.734	67.603	0					30	16	2	0	0	0	0.10969	1	24312	24312		67.344	10.803	1	3104600			59565	5711	43465	43799	58056	58056		305			-0.03821273828066296
VMAGDIYSV	9	Oxidation (M)	_VM(Oxidation (M))AGDIYSV_		VM(1)AGDIYSV		VM(78)AGDIYSV	0	0	1		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	A375_MHC_IP_R2	2	486.13128662109375	2	485.731143	969.447733	-0.75101	-0.00036479	0.80989	0.00039339	0.05888	2.86E-05	485.73148482178533	66.388	0.51027	67.124	66.831	67.342	0.73631					20	9	3	0	0	0	0.026461	1	25118	25118		77.984	10.949	1	2564800			59566	5711	43465	43799	58057	58057		305			-0.03821273828066296
VMAGDIYSV	9	Unmodified	_VMAGDIYSV_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-SECPEP	A375_MHC_IP_R1	1	954.1867065429688	1	954.460095	953.452819	-0.015553	-1.4845E-05	-0.25338	-0.00024184	-0.26894	-0.00025669	954.460008587209	80.06	1.0681	80.06	79.676	80.744	0					50	20	5	0	0	0	0.096726	1	29359	29359		61.357	25.23	1	46957000			59567	5711	43465	43800	58058	58058					-0.02576969965457465
VMAGDIYSV	9	Unmodified	_VMAGDIYSV_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	A375_MHC_IP_R2	2	956.1862182617188	1	954.460095	953.452819	-0.034885	-3.3296E-05	-0.37069	-0.00035381	-0.40557	-0.0003871	954.4598610090338	79.378	1.1165	80.123	79.693	80.81	0.74474					51	21	4	0	0	0	0.17328	2	30187	30187;30300		39.957	17.221	1	59854000			59568	5711	43465	43800	58059;58060	58059					-0.02576969965457465
VMAPRTLLL	9	Oxidation (M)	_VM(Oxidation (M))APRTLLL_		VM(1)APRTLLL		VM(70)APRTLLL	0	0	1		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-MSMS	A375_MHC_IP_R1	1	515.70947265625	2	515.309895	1028.60524	-0.52584	-0.00027097	-0.49068	-0.00025285	-1.0165	-0.00052382	515.3096403474996	75.162	1.0104	75.162	74.653	75.664	0					63	19	4	0	0	0	0.035419	1	27354	27354		70.332	18.702	1	12577000			59569	9539	43466	43801	58061	58061		438			0.0920785050197992
VMAPRTLLL	9	Oxidation (M)	_VM(Oxidation (M))APRTLLL_		VM(1)APRTLLL		VM(56)APRTLLL	0	0	1		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-SECPEP	A375_MHC_IP_R1	1	515.7097778320312	2	515.309895	1028.60524	-0.34725	-0.00017894	0.063713	3.2832E-05	-0.28353	-0.00014611	515.3098924046889	72.198	0.65765	72.198	71.917	72.575	0					23	12	2	0	0	0	0.23894	1	26213	26213		55.503	13.663	1	12871000			59570	9539	43466	43801	58062	58062		438			0.0920785050197992
VMAPRTLLL	9	Oxidation (M)	_VM(Oxidation (M))APRTLLL_		VM(1)APRTLLL		VM(46)APRTLLL	0	0	1		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-MSMS	A375_MHC_IP_R2	2	515.7089233398438	2	515.309895	1028.60524	-0.79653	-0.00041046	-0.12873	-6.6338E-05	-0.92526	-0.0004768	515.3097641511306	75.177	1.9833	75.914	75.365	77.349	0.73752					94	38	3	0	0	0	0.12748	1	28587	28587		45.74	20.749	1	6831900			59571	9539	43466	43801	58063	58063		438			0.0920785050197992
VMAPRTLLL	9	Oxidation (M)	_VM(Oxidation (M))APRTLLL_		VM(1)APRTLLL		VM(42)APRTLLL	0	0	1		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-MSMS	A375_MHC_IP_R2	2	515.7094116210938	2	515.309895	1028.60524	-0.66082	-0.00034053	-0.33482	-0.00017253	-0.99564	-0.00051306	515.3095965914055	84.526	0.50453	85.262	84.968	85.472	0.73601					17	9	2	0	0	0	0.14858	1	32150	32150		41.956	13.469	1	2630000			59572	9539	43466	43801	58064	58064		438			0.0920785050197992
VMAPRTLLL	9	Oxidation (M)	_VM(Oxidation (M))APRTLLL_		VM(1)APRTLLL		VM(53)APRTLLL	0	0	1		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-SECPEP	A375_MHC_IP_R2	2	515.7099609375	2	515.309895	1028.60524	-0.77649	-0.00040013	-0.12972	-6.6847E-05	-0.90621	-0.00046698	515.309836183433	74.203	1.0178	74.941	74.449	75.467	0.73751					67	19	4	0	0	0	0.16595	1	28124	28124		53.404	9.6316	1	16931000			59573	9539	43466	43801	58065	58065		438			0.0920785050197992
VMAPRTLLL	9	Oxidation (M)	_VM(Oxidation (M))APRTLLL_		VM(1)APRTLLL		VM(53)APRTLLL	0	0	1		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-SECPEP	A375_MHC_IP_R2	2	515.7095336914062	2	515.309895	1028.60524	-1.0071	-0.00051895	0.24138	0.00012439	-0.76569	-0.00039457	515.3099617871558	71.414	0.65837	72.148	71.706	72.364	0.73421					34	12	3	0	0	0	0.11849	1	26995	26995		53.404	20.618	1	14747000			59574	9539	43466	43801	58066	58066		438			0.0920785050197992
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-MSMS	A375_MHC_IP_R1	1	507.5010681152344	2	507.312438	1012.61032	-0.59953	-0.00030415	-0.35357	-0.00017937	-0.9531	-0.00048352	507.31242706122003	85.588	0.81197	85.588	85.21	86.022	0					47	15	4	0	0	0	0.59266	1	31529	31529		15.248	1.3424	1	15608000			59575	9539	43466	43802	58067	58067					0.10452154364600119
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-SECPEP	A375_MHC_IP_R1	1	507.7117919921875	2	507.312438	1012.61032	-0.21754	-0.00011036	-0.63745	-0.00032339	-0.85499	-0.00043375	507.31215910286915	82.326	0.76173	82.326	81.911	82.672	0					34	14	3	0	0	0	0.14606	1	30050	30050		55.503	31.293	1	13531000			59576	9539	43466	43802	58068	58068					0.10452154364600119
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-MSMS	A375_MHC_IP_R2	2	508.2997131347656	2	507.312438	1012.61032	-0.83359	-0.00042289	-0.29335	-0.00014882	-1.1269	-0.00057171	507.3123337641698	81.36	0.81113	82.103	81.57	82.381	0.74296					42	15	4	0	0	0	0.32092	1	30911	30911		29.082	9.8246	1	17422000			59577	9539	43466	43802	58069	58069					0.10452154364600119
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-SECPEP	A375_MHC_IP_R2	2	507.71197509765625	2	507.312438	1012.61032	-0.63662	-0.00032296	-0.26928	-0.00013661	-0.9059	-0.00045957	507.31244463226346	84.53	1.0686	85.266	84.865	85.933	0.73601					51	20	4	0	0	0	0.43207	1	32071	32071		40.239	13.971	1	15268000			59578	9539	43466	43802	58070	58070					0.10452154364600119
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-SECPEP	A375_MHC_IP_R1	1	500.7046813964844	2	500.304613	998.594672	-0.37918	-0.0001897	-0.096621	-4.834E-05	-0.4758	-0.00023804	500.3045754104006	74.563	0.66046	74.563	74.247	74.908	0					29	12	3	0	0	0	0.47674	1	27112	27112		36.506	12.296	1	10530000			59579	9742	43467	43803	58071	58071					0.09531867847545072
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-SECPEP	A375_MHC_IP_R2	2	500.1848449707031	2	500.304613	998.594672	-0.52635	-0.00026333	-0.11465	-5.7359E-05	-0.641	-0.00032069	500.304589011739	73.584	0.71481	74.32	73.938	74.653	0.73541					32	13	3	0	0	0	0.41434	1	27913	27913		39.95	22.863	1	12061000			59580	9742	43467	43803	58072	58072					0.09531867847545072
VMAPVLEKA	9	Unmodified	_VMAPVLEKA_					0	0	0		nc|ENSG00000171680|O94827-4|PLEKHG5;ENSG00000171680|ENST00000377728|PLEKHG5;nc|ENSG00000171680|O94827-3|PLEKHG5;nc|ENSG00000171680|O94827-7|PLEKHG5;ENST00000487949.4_1_1:6531427-6531640:-|nuORF	nc|ENSG00000171680|O94827-4|PLEKHG5	nc|ENSG00000171680|O94827-4|PLEKHG5	MULTI-MSMS	A375_MHC_IP_R2	2	479.7135925292969	2	479.275521	956.536489	-0.54044	-0.00025902	-0.068815	-3.2981E-05	-0.60925	-0.000292	479.27567375609897	48.451	0.30187	49.209	49.03	49.332	0.75737					7	5	2	0	0	0	0.29123	1	18160	18160		31.268	12.011	1	712510			59581	7627	43468	43804	58073	58073					0.05648186202245142
VMDFQEDLY	9	Unmodified	_VMDFQEDLY_					0	0	0		ENSG00000181754|ENST00000369864|AMIGO1	ENSG00000181754|ENST00000369864|AMIGO1	ENSG00000181754|ENST00000369864|AMIGO1	MSMS	A375_MHC_IP_R1	1	580.22900390625	2	580.25244	1158.49033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.93	1	103.93	103.43	104.43	0								0	0	0	0.1493	1	38162	38162		22.736	2.2827	1				59582	8359	43469	43805	58074	58074					-0.08257923490486974
VMDPTKILI	9	Unmodified	_VMDPTKILI_					0	0	0		nc|ENSG00000152520|Q58A45-2|PAN3;nc|ENSG00000152520|Q58A45-4|PAN3;ENST00000503791.5_1_13:28712794-28846220:+|nuORF;nc|ENSG00000152520|Q58A45-3|PAN3;ENSG00000152520|ENST00000380958|PAN3	nc|ENSG00000152520|Q58A45-2|PAN3	nc|ENSG00000152520|Q58A45-2|PAN3	MULTI-MSMS	A375_MHC_IP_R1	1	515.2159423828125	2	515.304278	1028.594	-0.49837	-0.00025681	0.65788	0.00033901	0.15951	8.2199E-05	515.3046238993915	100.59	0.7603	100.59	100.28	101.04	0					18	14	2	0	0	0	0.41409	1	36959	36959		24.021	2.2739	1	1318100			59583	5971	43470	43806	58075	58075					0.0808502840784513
VMDSKIVQV	9	Unmodified	_VMDSKIVQV_					0	0	0		ENSG00000196911|ENST00000368564|KPNA5;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000196911|ENST00000368564|KPNA5;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6	MULTI-SECPEP	A375_MHC_IP_R1	1	510.1832580566406	2	509.78371	1017.55287	-0.33897	-0.0001728	-0.40015	-0.00020399	-0.73911	-0.00037679	509.7835737353774	51.242	1.4719	51.242	50.915	52.387	0					64	28	5	0	0	0	0.01147	1	18119	18119		110.55	49.195	1	77526000			59584	9092;1092;3193	43471	43807	58076	58076					0.044792673683673456
VMDSKIVQV	9	Unmodified	_VMDSKIVQV_					0	0	0		ENSG00000196911|ENST00000368564|KPNA5;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000196911|ENST00000368564|KPNA5;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6	MULTI-SECPEP	A375_MHC_IP_R2	2	510.1832580566406	2	509.78371	1017.55287	-0.90346	-0.00046057	0.021948	1.1189E-05	-0.88152	-0.00044938	509.7838248561218	50.428	1.7219	51.182	50.804	52.526	0.75406					71	33	5	0	0	0	0.011143	1	18928	18928		136.39	58.243	1	96978000			59585	9092;1092;3193	43471	43807	58077	58077					0.044792673683673456
VMDSKIVQV	9	Oxidation (M)	_VM(Oxidation (M))DSKIVQV_		VM(1)DSKIVQV		VM(110)DSKIVQV	0	0	1		ENSG00000196911|ENST00000368564|KPNA5;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000196911|ENST00000368564|KPNA5;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6	MULTI-SECPEP	A375_MHC_IP_R1	1	518.1807861328125	2	517.781167	1033.54778	-0.49326	-0.0002554	-0.23414	-0.00012123	-0.7274	-0.00037663	517.7811409952665	37.633	1.0186	37.633	37.301	38.319	0					73	19	5	0	0	0	0.030244	1	12642	12642		107.1	35.177	1	188420000			59586	9092;1092;3193	43471	43808	58078	58078		13			0.03234963505747146
VMDSKIVQV	9	Oxidation (M)	_VM(Oxidation (M))DSKIVQV_		VM(1)DSKIVQV		VM(72)DSKIVQV	0	0	1		ENSG00000196911|ENST00000368564|KPNA5;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000196911|ENST00000368564|KPNA5;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6	MULTI-SECPEP	A375_MHC_IP_R1	1	518.1809692382812	2	517.781167	1033.54778	-0.42776	-0.00022149	0.045041	2.3321E-05	-0.38272	-0.00019817	517.7811927774654	51.275	1.015	51.275	50.814	51.829	0					36	19	3	0	0	0	0.053555	1	18154	18154		71.708	33.532	1	10236000			59587	9092;1092;3193	43471	43808	58079	58079		13			0.03234963505747146
VMDSKIVQV	9	Oxidation (M)	_VM(Oxidation (M))DSKIVQV_		VM(1)DSKIVQV		VM(87)DSKIVQV	0	0	1		ENSG00000196911|ENST00000368564|KPNA5;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000196911|ENST00000368564|KPNA5;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6	MULTI-SECPEP	A375_MHC_IP_R2	2	518.1804809570312	2	517.781167	1033.54778	-1.2953	-0.00067066	0.34976	0.0001811	-0.9455	-0.00048956	517.7814212082072	36.82	1.1687	37.591	37.106	38.275	0.7709					69	22	5	0	0	0	0.058501	1	13373	13373		87.258	33.425	1	171540000			59588	9092;1092;3193	43471	43808	58080	58080		13			0.03234963505747146
VMDSKIVQV	9	Oxidation (M)	_VM(Oxidation (M))DSKIVQV_		VM(1)DSKIVQV		VM(78)DSKIVQV	0	0	1		ENSG00000196911|ENST00000368564|KPNA5;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000196911|ENST00000368564|KPNA5;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6	MULTI-SECPEP	A375_MHC_IP_R2	2	518.18115234375	2	517.781167	1033.54778	-0.88249	-0.00045694	0.50622	0.00026211	-0.37627	-0.00019483	517.781400820074	50.447	0.91063	51.201	50.854	51.765	0.75406					30	17	2	0	0	0	0.09145	1	18935	18935		78.06	39.885	1	14904000			59589	9092;1092;3193	43471	43808	58081	58081		13			0.03234963505747146
VMDVDLKFL	9	Unmodified	_VMDVDLKFL_					0	0	0			REV__tr|U7T2M7|U7T2M7_FUSNUGalactokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=galKPE=3SV=1	REV__tr|U7T2M7|U7T2M7_FUSNUGalactokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=galKPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	540.7374267578125	2	540.293911	1078.57327	-0.52453	-0.0002834	-0.30929	-0.00016711	-0.83382	-0.00045051	540.2937882161959	78.142	0.81245	78.142	77.844	78.657	0					31	15	3	0	0	0	0.53367	1	28676	28676		18.146	1.2041	1	10471000	+		59590	28752	43472	43809	58082	58082					0.03712438028173892
VMEKSFLEY	9	Unmodified	_VMEKSFLEY_					0	0	0		ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	573.6806030273438	2	573.281	1144.54745	-0.030887	-1.7707E-05	0.011153	6.3938E-06	-0.019733	-1.1313E-05	573.2809868820078	70.211	0.81582	70.211	69.882	70.698	0					31	15	3	0	0	0	0.030244	1	25471	25471		96.936	60.809	1	11126000			59591	6357	43473	43810	58083	58083					-0.01904456214106176
VMEKSFLEY	9	Unmodified	_VMEKSFLEY_					0	0	0		ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	573.6807861328125	2	573.281	1144.54745	-0.15192	-8.7095E-05	-0.60818	-0.00034866	-0.7601	-0.00043575	573.2806479671335	69.49	0.81315	70.225	69.829	70.642	0.73421					37	15	3	0	0	0	0.0575	1	26291	26291		86.332	46.375	1	11026000			59592	6357	43473	43810	58084	58084					-0.01904456214106176
VMEKSFLEY	9	Oxidation (M)	_VM(Oxidation (M))EKSFLEY_		VM(1)EKSFLEY		VM(72)EKSFLEY	0	0	1		ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	581.6783447265625	2	581.278457	1160.54236	-0.21854	-0.00012703	0.21517	0.00012507	-0.0033741	-1.9613E-06	581.2787048358794	60.355	1.018	60.355	59.803	60.821	0					42	19	3	0	0	0	0.11887	1	21705	21705		71.708	33.734	1	10024000			59593	6357	43473	43811	58085	58085		340			-0.031487600767377444
VMEKSFLEY	9	Oxidation (M)	_VM(Oxidation (M))EKSFLEY_		VM(1)EKSFLEY		VM(59)EKSFLEY	0	0	1		ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	581.6774291992188	2	581.278457	1160.54236	-0.64659	-0.00037585	0.036437	2.118E-05	-0.61016	-0.00035467	581.2782621799748	61.302	1.3613	62.047	61.566	62.928	0.74503					43	26	3	0	0	0	0.062639	1	23183	23183		59.368	30.287	1	2442800			59594	6357	43473	43811	58086	58086		340			-0.031487600767377444
VMFGGKQVVV	10	Unmodified	_VMFGGKQVVV_					0	0	0		nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	MULTI-SECPEP	A375_MHC_IP_R1	1	532.7017822265625	2	532.30207	1062.58959	-0.93106	-0.00049561	0.46553	0.0002478	-0.46553	-0.0002478	532.8037678921703	67.244	0.5629	67.244	67.04	67.603	0					15	10	2	0	0	0	0.6774	1	24370	24370		27.629	12.791	1	2065000			59595	7336	43474	43812	58087	58087					0.06079563984917513
VMFGGKQVVV	10	Unmodified	_VMFGGKQVVV_					0	0	0		nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	MULTI-SECPEP	A375_MHC_IP_R2	2	532.7019653320312	2	532.30207	1062.58959	-0.85754	-0.00045647	0.66182	0.00035229	-0.19572	-0.00010418	532.3022231033951	66.257	0.76615	66.994	66.729	67.496	0.73686					25	14	3	0	0	0	0.56504	1	25120	25120		34.402	13.948	1	3451900			59596	7336	43474	43812	58088	58088					0.06079563984917513
VMFGGKQVVV	10	Oxidation (M)	_VM(Oxidation (M))FGGKQVVV_		VM(1)FGGKQVVV		VM(42)FGGKQVVV	0	0	1		nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	MULTI-SECPEP	A375_MHC_IP_R1	1	540.699462890625	2	540.299527	1078.5845	-0.55122	-0.00029782	0.84046	0.0004541	0.28924	0.00015627	540.2999818427841	56.844	0.45793	56.844	56.498	56.956	0					13	8	2	0	0	0	0.56504	1	20377	20377		41.84	30.199	1	1849700			59597	7336	43474	43813	58089	58089		375			0.04835260122285945
VMFGGKQVVV	10	Oxidation (M)	_VM(Oxidation (M))FGGKQVVV_					0	0	1		nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	MULTI-MATCH	A375_MHC_IP_R2	2		2	540.299527	1078.5845	-1.0056	-0.0005433	-0.028759	-1.5539E-05	-1.0343	-0.00055884	540.299551480382	55.904	0.40858	56.654	56.388	56.796	0.75014	-0.095036	-0.00039283	NaN	41.84	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2233300			59598	7336	43474	43813				375			0.04835260122285945
VMFNGKVYL	9	Unmodified	_VMFNGKVYL_					0	0	0		ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	MULTI-SECPEP	A375_MHC_IP_R2	2	535.1900634765625	2	535.788795	1069.56304	-0.78858	-0.00042251	0.67253	0.00036033	-0.11605	-6.2176E-05	536.2905901306603	78.617	0.66158	79.362	79.134	79.796	0.74474					24	12	3	0	0	0	0.47674	1	29898	29898		32.305	15.363	1	3354200			59599	3750	43475	43814	58090	58090					0.031038750935977077
VMFNGKVYL	9	Oxidation (M)	_VM(Oxidation (M))FNGKVYL_		VM(1)FNGKVYL		VM(51)FNGKVYL	0	0	1		ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	MULTI-SECPEP	A375_MHC_IP_R2	2	544.1857299804688	2	543.786253	1085.55795	-0.76352	-0.00041519	-1.4966	-0.00081381	-2.2601	-0.001229	544.2876331256626	67.77	1.6254	68.506	67.698	69.323	0.73583					66	31	3	0	0	0	0.24479	1	25717	25717		50.855	14.811	1	5159800			59600	3750	43475	43815	58091	58091		193			0.018595712309661394
VMGALRKRL	9	Unmodified	_VMGALRKRL_					0	0	0		OR2V2|p.G305R|1|0.77|ENSG00000182613|chr5:181155855-181155855|G/A|missense_variant	OR2V2|p.G305R|1|0.77|ENSG00000182613|chr5:181155855-181155855|G/A|missense_variant	OR2V2|p.G305R|1|0.77|ENSG00000182613|chr5:181155855-181155855|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	522.7186889648438	2	522.328953	1042.64335	-0.85417	-0.00044616	3.9219	0.0020485	3.0677	0.0016023	522.329686184208	142.23	0.65887	142.23	141.68	142.34	0					19	12	3	0	0	0	0.81122	1	54433	54433		0.6015	0	1	1201900			59601	15075	43476	43816	58092	58092					0.12373781207293177
VMGKIFAV	8	Unmodified	_VMGKIFAV_					0	0	0		nc|ENSG00000145332|Q9P2G9-2|KLHL8;ENSG00000145332|ENST00000273963|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	MULTI-SECPEP	A375_MHC_IP_R1	1	433.1632385253906	2	432.754224	863.493896	-0.1605	-6.9458E-05	0.32029	0.00013861	0.15979	6.915E-05	432.7542658184042	73.323	0.60884	73.323	73.031	73.64	0					21	11	3	0	0	0	0.69059	1	26738	26738		30.225	3.8835	1	2032100			59602	5552	43477	43817	58093	58093					0.056688358646852066
VMGKIFAV	8	Unmodified	_VMGKIFAV_					0	0	0		nc|ENSG00000145332|Q9P2G9-2|KLHL8;ENSG00000145332|ENST00000273963|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	MULTI-SECPEP	A375_MHC_IP_R2	2	433.1537780761719	2	432.754224	863.493896	-0.41716	-0.00018053	-0.1388	-6.0068E-05	-0.55596	-0.0002406	432.75413172749484	72.346	0.50694	73.082	72.821	73.328	0.73541					17	9	2	0	0	0	0.8211	1	27431	27431		30.225	5.5509	1	2720100			59603	5552	43477	43817	58094	58094					0.056688358646852066
VMGKIFAV	8	Oxidation (M)	_VM(Oxidation (M))GKIFAV_		VM(1)GKIFAV		VM(44)GKIFAV	0	0	1		nc|ENSG00000145332|Q9P2G9-2|KLHL8;ENSG00000145332|ENST00000273963|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	MULTI-MSMS	A375_MHC_IP_R2	2	441.1513671875	2	440.751682	879.48881	-0.49277	-0.00021719	0.21106	9.3026E-05	-0.2817	-0.00012416	440.7516881206969	54.85	0.613	55.601	55.32	55.933	0.75075					24	11	3	0	0	0	0.61116	1	20692	20692		44.407	19.008	1	6303500			59604	5552	43477	43818	58095	58095		295			0.044245320020763756
VMGLVLEWI	9	Unmodified	_VMGLVLEWI_					0	0	0		nc|ENSG00000135069|Q9Y617-2|PSAT1;ENSG00000135069|ENST00000376588|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	MULTI-SECPEP	A375_MHC_IP_R2	2	353.2586975097656	3	353.868423	1058.58344	-0.46975	-0.00016623	3.2455	0.0011485	2.7757	0.00098225	353.86972919705	33.265	0.40814	34.017	33.686	34.095	0.75225					12	7	3	0	0	0	0.69504	1	11891	11891		8.1555	3.6267	1	3646400			59605	4640	43478	43819	58096	58096					0.05649045753398241
VMGLVLEWI	9	Unmodified	_VMGLVLEWI_					0	0	0		nc|ENSG00000135069|Q9Y617-2|PSAT1;ENSG00000135069|ENST00000376588|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	MULTI-MATCH	A375_MHC_IP_R1	1		3	353.868423	1058.58344	-0.075366	-2.667E-05	3.8932	0.0013777	3.8178	0.001351	354.20398985640276	34.15	0.20234	34.15	34.001	34.203	0	0.066424	0.00017286	NaN	8.1555	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1888700			59606	4640	43478	43819							0.05649045753398241
VMHDSSFSV	9	Unmodified	_VMHDSSFSV_					0	0	0		ENSG00000101544|ENST00000262198|ADNP2	ENSG00000101544|ENST00000262198|ADNP2	ENSG00000101544|ENST00000262198|ADNP2	MULTI-SECPEP	A375_MHC_IP_R1	1	504.19317626953125	2	504.726392	1007.43823	-0.2346	-0.00011841	-0.49806	-0.00025138	-0.73266	-0.00036979	504.7260837150809	43.395	0.30508	43.395	43.197	43.502	0					8	5	2	0	0	0	0.55359	1	15097	15097		21.747	0	1	722420			59607	2307	43479	43820	58097	58097					-0.06519042113586693
VMHDSSFSV	9	Unmodified	_VMHDSSFSV_					0	0	0		ENSG00000101544|ENST00000262198|ADNP2	ENSG00000101544|ENST00000262198|ADNP2	ENSG00000101544|ENST00000262198|ADNP2	MULTI-SECPEP	A375_MHC_IP_R2	2	504.1928405761719	2	504.726392	1007.43823	-0.62264	-0.00031426	-0.71048	-0.0003586	-1.3331	-0.00067286	504.7261207009195	42.57	0.30527	43.342	43.167	43.472	0.7724					8	5	2	0	0	0	0.55359	1	15804	15804		15.847	0	1	880190			59608	2307	43479	43820	58098	58098					-0.06519042113586693
VMIRIWWKPLK	11	Unmodified	_VMIRIWWKPLK_					0	0	0		ENST00000380617.7_1_13:30814691-30815165:-|nuORF	ENST00000380617.7_1_13:30814691-30815165:-|nuORF	ENST00000380617.7_1_13:30814691-30815165:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	736.3449096679688	2	735.444317	1468.87408	-0.89834	-0.00066068	-0.031957	-2.3503E-05	-0.9303	-0.00068418	735.4436536486805	148.85	2.1201	148.85	147.8	149.92	0					186	61	5	0	0	0	0.73934	1	56628	56628		0	0	1	1370000			59609	11354	43480	43821	58099	58099					0.15839989469259308
VMLAFLHVAV	10	Unmodified	_VMLAFLHVAV_					0	0	0			REV__ENST00000566056.1_1_16:30959736-30965162:+|nuORF	REV__ENST00000566056.1_1_16:30959736-30965162:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	550.720947265625	2	550.320263	1098.62597	-0.66678	-0.00036694	2.4124	0.0013276	1.7456	0.00096062	550.3216228366964	80.298	0.45548	80.298	80.136	80.592	0					13	8	2	0	0	0	0.8716	1	29379	29379		7.9102	0.3012	1	2382900	+		59610	21376	43481	43822	58100	58100					0.08060440881627073
VMLAFRRTRLF	11	Unmodified	_VMLAFRRTRLF_					0	0	0			REV__ENSG00000140030|ENST00000267549|GPR65	REV__ENSG00000140030|ENST00000267549|GPR65	MSMS	A375_MHC_IP_R2	2	470.6690673828125	3	470.611458	1408.81254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.447	1	32.165	31.665	32.665	0.71857								0	0	0	0.16336	1	11117	11117		1.2148	0	1		+		59611	19191	43482	43823	58101	58101					0.12449057769981664
VMLDVPIRL	9	Unmodified	_VMLDVPIRL_					0	0	0		nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	MULTI-MSMS	A375_MHC_IP_R1	1	528.5350952148438	2	528.31772	1054.62089	-0.30387	-0.00016054	-0.2899	-0.00015316	-0.59377	-0.0003137	528.3174973400617	111.79	0.6097	111.79	111.52	112.13	0					28	11	3	0	0	0	0.34064	1	40902	40902		27.629	7.1752	1	9364200			59612	1607	43483	43824	58102	58102					0.0957613701898481
VMLDVPIRL	9	Unmodified	_VMLDVPIRL_					0	0	0		nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	MULTI-MSMS	A375_MHC_IP_R2	2	528.7173461914062	2	528.31772	1054.62089	-0.35082	-0.00018534	-0.13833	-7.3083E-05	-0.48915	-0.00025843	528.3176112121671	110.86	0.81581	111.6	111.24	112.06	0.73691					29	15	3	0	0	0	0.0098183	1	41796	41796		114.65	72.554	1	8377600			59613	1607	43483	43824	58103	58103					0.0957613701898481
VMLDVPIRL	9	Oxidation (M)	_VM(Oxidation (M))LDVPIRL_		VM(1)LDVPIRL		VM(50)LDVPIRL	0	0	1		nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	MULTI-SECPEP	A375_MHC_IP_R1	1	536.7141723632812	2	536.315177	1070.6158	-0.65921	-0.00035354	0.095443	5.1187E-05	-0.56376	-0.00030236	536.3152246940184	102.43	0.80858	102.43	102.05	102.86	0					34	15	3	0	0	0	0.13208	1	37590	37590		49.554	21.067	1	11397000			59614	1607	43483	43825	58104	58104		49			0.08331833156375978
VMLDVPIRL	9	Oxidation (M)	_VM(Oxidation (M))LDVPIRL_		VM(1)LDVPIRL		VM(73)LDVPIRL	0	0	1		nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	MULTI-SECPEP	A375_MHC_IP_R2	2	536.5648193359375	2	536.315177	1070.6158	-0.77817	-0.00041734	-0.028792	-1.5442E-05	-0.80696	-0.00043278	536.3151401514065	101.47	0.81474	102.24	101.85	102.67	0.76428					33	15	3	0	0	0	0.061442	1	38445	38445		72.968	38.866	1	11132000			59615	1607	43483	43825	58105	58105		49			0.08331833156375978
VMLSVVWNY	9	Unmodified	_VMLSVVWNY_					0	0	0			REV__ENSG00000258083|ENST00000641559|OR9A4	REV__ENSG00000258083|ENST00000641559|OR9A4	MSMS	A375_MHC_IP_R2	2	555.706787109375	2	555.786253	1109.55795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.764	1	62.507	62.007	63.007	0.74263								0	0	0	0.1535	1	23410	23410		15.847	3.3156	1		+		59616	22895	43484	43826	58106	58106					0.0075557123095677525
VMLWTRLTPL	10	Unmodified	_VMLWTRLTPL_					0	0	0			REV__nc|ENSG00000164308|Q6P179-3|ERAP2	REV__nc|ENSG00000164308|Q6P179-3|ERAP2	MULTI-MSMS	A375_MHC_IP_R2	2	615.7572021484375	2	615.357376	1228.7002	-0.46782	-0.00028788	0.0053194	3.2734E-06	-0.4625	-0.0002846	615.3573107066209	135.49	0.40549	135.63	135.46	135.86	0.13901					12	7	2	0	0	0	0.71944	1	53276	53276		3.5965	3.5965	1	1970500	+		59617	20480	43485	43827	58107	58107					0.0949978397313771
VMLWTRLTPL	10	Unmodified	_VMLWTRLTPL_					0	0	0			REV__nc|ENSG00000164308|Q6P179-3|ERAP2	REV__nc|ENSG00000164308|Q6P179-3|ERAP2	MULTI-MATCH	A375_MHC_IP_R1	1		2	615.357376	1228.7002	-0.62777	-0.0003863	1.2974	0.00079838	0.66966	0.00041208	615.8602215122669	135.56	0.35637	135.56	135.39	135.74	0	-0.032503	0.0013921	NaN	3.5965	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1201400	+		59618	20480	43485	43827							0.0949978397313771
VMMRMRMMR	9	Unmodified	_VMMRMRMMR_					0	0	0			REV__ENST00000263464.7_1_11:102193210-102193270:+|nuORF	REV__ENST00000263464.7_1_11:102193210-102193270:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	414.25225830078125	3	414.535521	1240.58473	0.43599	0.00018073	2.6365	0.0010929	3.0725	0.0012736	414.8711631665478	20.359	0.25293	20.359	20.283	20.536	0					5	4	2	0	0	0	0.78348	1	5192	5192		0.96228	0	1	424100	+		59619	23226	43486	43828	58108	58108					-0.025934260170060952
VMNPKPSSW	9	Oxidation (M)	_VM(Oxidation (M))NPKPSSW_		VM(1)NPKPSSW		VM(90)NPKPSSW	0	0	1		ENSG00000018408|ENST00000360632|WWTR1	ENSG00000018408|ENST00000360632|WWTR1	ENSG00000018408|ENST00000360632|WWTR1	MULTI-MSMS	A375_MHC_IP_R1	1	531.6571655273438	2	531.257859	1060.50117	-0.92885	-0.00049346	0.23765	0.00012626	-0.6912	-0.0003672	531.2579574203656	30.294	1.0607	30.294	30.099	31.16	0					39	20	3	0	0	0	0.014789	1	9609	9609		90.135	31.456	1	12905000			59620	1046	43487	43829	58109	58109		9			-0.026664763255666912
VMNPKPSSW	9	Oxidation (M)	_VM(Oxidation (M))NPKPSSW_		VM(1)NPKPSSW		VM(78)NPKPSSW	0	0	1		ENSG00000018408|ENST00000360632|WWTR1	ENSG00000018408|ENST00000360632|WWTR1	ENSG00000018408|ENST00000360632|WWTR1	MULTI-MSMS	A375_MHC_IP_R1	1	531.657470703125	2	531.257859	1060.50117	-0.68548	-0.00036417	0.072809	3.8681E-05	-0.61267	-0.00032549	531.2578476710323	31.244	1.5789	31.244	30.754	32.333	0					49	30	2	0	0	0	0.026372	2	9866	9866;10100		78.06	34.202	1	3490000			59621	1046	43487	43829	58110;58111	58110		9			-0.026664763255666912
VMNPKPSSW	9	Oxidation (M)	_VM(Oxidation (M))NPKPSSW_		VM(1)NPKPSSW		VM(97)NPKPSSW	0	0	1		ENSG00000018408|ENST00000360632|WWTR1	ENSG00000018408|ENST00000360632|WWTR1	ENSG00000018408|ENST00000360632|WWTR1	MULTI-MSMS	A375_MHC_IP_R2	2	531.6574096679688	2	531.257859	1060.50117	-1.14	-0.00060564	0.17797	9.455E-05	-0.96204	-0.00051109	531.2579112628679	29.742	0.75785	30.441	30.083	30.84	0.69872					32	14	3	0	0	0	0.0095341	1	10357	10357		96.936	38.257	1	13141000			59622	1046	43487	43829	58112	58112		9			-0.026664763255666912
VMNPKPSSW	9	Oxidation (M)	_VM(Oxidation (M))NPKPSSW_		VM(1)NPKPSSW		VM(51)NPKPSSW	0	0	1		ENSG00000018408|ENST00000360632|WWTR1	ENSG00000018408|ENST00000360632|WWTR1	ENSG00000018408|ENST00000360632|WWTR1	MULTI-MSMS	A375_MHC_IP_R2	2	531.6575317382812	2	531.257859	1060.50117	-0.66856	-0.00035518	-0.5021	-0.00026675	-1.1707	-0.00062192	531.2576645349865	30.648	1.2163	31.366	30.809	32.026	0.71857					40	23	2	0	0	0	0.095851	1	10723	10723		51.415	27.395	1	2908200			59623	1046	43487	43829	58113	58113		9			-0.026664763255666912
VMNQGVAPMV	10	Unmodified	_VMNQGVAPMV_					0	0	0		nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	nc|ENSG00000163939|Q86U86-4|PBRM1	MULTI-MSMS	A375_MHC_IP_R1	1	523.6603393554688	2	523.262087	1044.50962	-0.41981	-0.00021967	1.6398	0.00085803	1.22	0.00063836	523.2624176983601	40.715	0.70867	40.715	40.304	41.013	0					38	13	4	0	0	0	0.39599	1	13957	13957		34.402	11.253	1	12476000			59624	14724	43488	43830	58114	58114					-0.010852456805878319
VMPEAVPEV	9	Unmodified	_VMPEAVPEV_					0	0	0		nc|ENSG00000101191|Q9BTC0-1|DIDO1;ENSG00000101191|ENST00000395343|DIDO1	nc|ENSG00000101191|Q9BTC0-1|DIDO1	nc|ENSG00000101191|Q9BTC0-1|DIDO1	MULTI-MSMS	A375_MHC_IP_R1	1	486.1490173339844	2	485.749336	969.484119	-0.069812	-3.3911E-05	-0.042131	-2.0465E-05	-0.11194	-5.4376E-05	485.749201172778	78.929	0.60571	78.929	78.556	79.161	0					28	11	3	0	0	0	0.022213	1	28754	28754		81.613	37.755	1	6643900			59625	2268	43489	43831	58115	58115					-0.0018439693135405832
VMPEAVPEV	9	Unmodified	_VMPEAVPEV_					0	0	0		nc|ENSG00000101191|Q9BTC0-1|DIDO1;ENSG00000101191|ENST00000395343|DIDO1	nc|ENSG00000101191|Q9BTC0-1|DIDO1	nc|ENSG00000101191|Q9BTC0-1|DIDO1	MULTI-MSMS	A375_MHC_IP_R2	2	486.1489562988281	2	485.749336	969.484119	-0.58098	-0.00028221	-0.23108	-0.00011225	-0.81205	-0.00039445	485.74917342922555	78.109	0.9193	78.852	78.365	79.285	0.74293					32	17	3	0	0	0	0.034481	2	29646	29646;29774		71.134	32.982	1	8986500			59626	2268	43489	43831	58116;58117	58116					-0.0018439693135405832
VMPEAVPEV	9	Unmodified	_VMPEAVPEV_					0	0	0		nc|ENSG00000101191|Q9BTC0-1|DIDO1;ENSG00000101191|ENST00000395343|DIDO1	nc|ENSG00000101191|Q9BTC0-1|DIDO1	nc|ENSG00000101191|Q9BTC0-1|DIDO1	MULTI-SECPEP	A375_MHC_IP_R2	2	970.8583374023438	1	970.491395	969.484119	-0.03562	-3.4569E-05	-0.42884	-0.00041619	-0.46446	-0.00045076	970.4909781059666	78.175	0.56058	78.918	78.572	79.132	0.74293					17	10	3	0	0	0	0.60917	1	29650	29650		25.399	10.561	1	4395200			59627	2268	43489	43831	58118	58118					-0.0018439693135405832
VMPEAVPEV	9	Unmodified	_VMPEAVPEV_					0	0	0		nc|ENSG00000101191|Q9BTC0-1|DIDO1;ENSG00000101191|ENST00000395343|DIDO1	nc|ENSG00000101191|Q9BTC0-1|DIDO1	nc|ENSG00000101191|Q9BTC0-1|DIDO1	MULTI-MATCH	A375_MHC_IP_R1	1		1	970.491395	969.484119	0.30028	0.00029142	-0.086933	-8.4368E-05	0.21335	0.00020705	970.491388721985	78.884	0.60571	78.884	78.556	79.161	0	-0.017024	0.00019852	NaN	25.399	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4973500			59628	2268	43489	43831							-0.0018439693135405832
VMPEAVPEV	9	Oxidation (M)	_VM(Oxidation (M))PEAVPEV_		VM(1)PEAVPEV		VM(64)PEAVPEV	0	0	1		nc|ENSG00000101191|Q9BTC0-1|DIDO1;ENSG00000101191|ENST00000395343|DIDO1	nc|ENSG00000101191|Q9BTC0-1|DIDO1	nc|ENSG00000101191|Q9BTC0-1|DIDO1	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1462707519531	2	493.746793	985.479033	-0.81156	-0.0004007	-0.050803	-2.5084E-05	-0.86236	-0.00042579	493.74681610228686	61.25	1.059	61.995	61.464	62.523	0.74503					50	20	3	0	0	0	0.1277	1	23166	23166		64.236	18.215	1	10051000			59629	2268	43489	43832	58119	58119		91			-0.014287007939628893
VMQEGLAHI	9	Oxidation (M)	_VM(Oxidation (M))QEGLAHI_		VM(1)QEGLAHI		VM(61)QEGLAHI	0	0	1		ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	MULTI-SECPEP	A375_MHC_IP_R1	1	507.6578369140625	2	507.257859	1012.50117	-0.59315	-0.00030088	-0.21693	-0.00011004	-0.81008	-0.00041092	507.25778509994336	39.636	0.86274	39.636	39.085	39.948	0					24	16	3	0	0	0	0.14422	1	13589	13589		61.357	46.519	1	3260100			59630	5980	43490	43833	58120	58120		319			-0.004584763255479629
VMQEGLAHI	9	Oxidation (M)	_VM(Oxidation (M))QEGLAHI_		VM(1)QEGLAHI		VM(52)QEGLAHI	0	0	1		ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9801025390625	2	507.257859	1012.50117	-1.0213	-0.00051804	-0.04648	-2.3577E-05	-1.0677	-0.00054162	507.25787286889454	38.808	0.45933	39.582	39.3	39.76	0.77451					13	8	2	0	0	0	0.24548	1	14313	14313		52.268	37.43	1	2943900			59631	5980	43490	43833	58121	58121		319			-0.004584763255479629
VMQEGLAHI	9	Unmodified	_VMQEGLAHI_					0	0	0		ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	MULTI-SECPEP	A375_MHC_IP_R2	2	499.66015625	2	499.260402	996.506251	-0.70617	-0.00035256	1.7122	0.00085484	1.006	0.00050228	499.2605446256241	50.43	0.40652	51.184	50.955	51.361	0.75406					11	7	2	0	0	0	0.24479	1	19000	19000		50.855	18.55	1	1982900			59632	5980	43490	43834	58122	58122					0.00785827537060868
VMQENITKV	9	Unmodified	_VMQENITKV_					0	0	0		VAMP4|p.I64F|1|0.2|ENSG00000117533|chr1:171710789-171710789|T/A|missense_variant;nc|ENSG00000117533|O75379-2|VAMP4;ENSG00000117533|ENST00000236192|VAMP4	VAMP4|p.I64F|1|0.2|ENSG00000117533|chr1:171710789-171710789|T/A|missense_variant	VAMP4|p.I64F|1|0.2|ENSG00000117533|chr1:171710789-171710789|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	530.604248046875	2	531.286617	1060.55868	-0.55188	-0.0002932	-0.77453	-0.0004115	-1.3264	-0.0007047	531.2859187001238	37.207	0.45533	37.207	36.845	37.301	0					10	8	2	0	0	0	0.50484	1	12528	12528		28.495	13.246	1	1836500			59633	3492	43491	43835	58123	58123					0.03082365880004545
VMQENITKV	9	Unmodified	_VMQENITKV_					0	0	0		VAMP4|p.I64F|1|0.2|ENSG00000117533|chr1:171710789-171710789|T/A|missense_variant;nc|ENSG00000117533|O75379-2|VAMP4;ENSG00000117533|ENST00000236192|VAMP4	VAMP4|p.I64F|1|0.2|ENSG00000117533|chr1:171710789-171710789|T/A|missense_variant	VAMP4|p.I64F|1|0.2|ENSG00000117533|chr1:171710789-171710789|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	531.6859741210938	2	531.286617	1060.55868	-0.83207	-0.00044207	-0.24549	-0.00013043	-1.0776	-0.0005725	531.2866148398447	36.324	0.40791	37.095	36.85	37.258	0.7709					10	7	2	0	0	0	0.30133	1	13269	13269		51.415	18.63	1	2277400			59634	3492	43491	43835	58124	58124					0.03082365880004545
VMQENITKV	9	Oxidation (M)	_VM(Oxidation (M))QENITKV_		VM(1)QENITKV		VM(51)QENITKV	0	0	1		VAMP4|p.I64F|1|0.2|ENSG00000117533|chr1:171710789-171710789|T/A|missense_variant;nc|ENSG00000117533|O75379-2|VAMP4;ENSG00000117533|ENST00000236192|VAMP4	VAMP4|p.I64F|1|0.2|ENSG00000117533|chr1:171710789-171710789|T/A|missense_variant	VAMP4|p.I64F|1|0.2|ENSG00000117533|chr1:171710789-171710789|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	539.6836547851562	2	539.284074	1076.5536	-0.85619	-0.00046173	0.15953	8.6033E-05	-0.69666	-0.0003757	539.2841075660833	27.861	0.55415	27.861	27.634	28.188	0					18	10	2	0	0	0	0.31976	1	8547	8547		51.488	21.647	1	3982600			59635	3492	43491	43836	58125	58125		179			0.01838062017395714
VMQENITKV	9	Oxidation (M)	_VM(Oxidation (M))QENITKV_		VM(1)QENITKV		VM(44)QENITKV	0	0	1		VAMP4|p.I64F|1|0.2|ENSG00000117533|chr1:171710789-171710789|T/A|missense_variant;nc|ENSG00000117533|O75379-2|VAMP4;ENSG00000117533|ENST00000236192|VAMP4	VAMP4|p.I64F|1|0.2|ENSG00000117533|chr1:171710789-171710789|T/A|missense_variant	VAMP4|p.I64F|1|0.2|ENSG00000117533|chr1:171710789-171710789|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	539.6837158203125	2	539.284074	1076.5536	-0.82148	-0.00044301	-0.22242	-0.00011995	-1.0439	-0.00056296	539.2840881632394	27.296	0.56064	27.974	27.69	28.251	0.67857					20	10	3	0	0	0	0.39273	1	9281	9281		43.982	18.991	1	4340900			59636	3492	43491	43836	58126	58126		179			0.01838062017395714
VMRIKLPKI	9	Unmodified	_VMRIKLPKI_					0	0	0			REV__chr1:120425845-120427706|470|27.51|0.0|21.39|+|0|NBPF8,NBPF8|1	REV__chr1:120425845-120427706|470|27.51|0.0|21.39|+|0|NBPF8,NBPF8|1	MULTI-MSMS	A375_MHC_IP_R1	1	366.9645080566406	3	366.579095	1096.71546	0.23538	8.6286E-05	0.30983	0.00011358	0.54521	0.00019986	366.57920177579734	33.475	5.1792	33.475	32.989	38.168	0					130	101	2	0	0	0	0.57432	4	10918	10893;10918;11081;11326		16.149	16.149	1	8107900	+		59637	15662	43492	43837	58127;58128;58129;58130	58128					0.17096695561008346
VMRIKLPKI	9	Unmodified	_VMRIKLPKI_					0	0	0			REV__chr1:120425845-120427706|470|27.51|0.0|21.39|+|0|NBPF8,NBPF8|1	REV__chr1:120425845-120427706|470|27.51|0.0|21.39|+|0|NBPF8,NBPF8|1	MULTI-MSMS	A375_MHC_IP_R1	1	366.6448669433594	3	366.579095	1096.71546	0.37381	0.00013703	0.19452	7.1305E-05	0.56832	0.00020834	366.57919568819904	42.445	0.60694	42.445	42.132	42.739	0					17	11	2	0	0	0	0.7235	1	14696	14696		4.897	4.897	1	940640	+		59638	15662	43492	43837	58131	58131					0.17096695561008346
VMRIKLPKI	9	Unmodified	_VMRIKLPKI_					0	0	0			REV__chr1:120425845-120427706|470|27.51|0.0|21.39|+|0|NBPF8,NBPF8|1	REV__chr1:120425845-120427706|470|27.51|0.0|21.39|+|0|NBPF8,NBPF8|1	MULTI-MSMS	A375_MHC_IP_R2	2	366.6446838378906	3	366.579095	1096.71546	-0.10322	-3.7839E-05	0.37847	0.00013874	0.27524	0.0001009	366.579234176927	32.445	4.8754	33.182	32.857	37.733	0.73692					156	95	3	0	0	0	0.68705	5	11993	11545;11993;12753;13006;13266		8.1555	8.1555	1	7323700	+		59639	15662	43492	43837	58132;58133;58134;58135;58136	58133					0.17096695561008346
VMRIKLPKI	9	Unmodified	_VMRIKLPKI_					0	0	0			REV__chr1:120425845-120427706|470|27.51|0.0|21.39|+|0|NBPF8,NBPF8|1	REV__chr1:120425845-120427706|470|27.51|0.0|21.39|+|0|NBPF8,NBPF8|1	MULTI-MSMS	A375_MHC_IP_R2	2	366.58221435546875	3	366.579095	1096.71546	-0.073841	-2.7068E-05	0.20893	7.6591E-05	0.13509	4.9522E-05	366.57922167670023	40.637	0.86399	41.412	41.133	41.997	0.77451					22	16	2	0	0	0	0.7235	1	15059	15059		4.897	1.3005	1	1598200	+		59640	15662	43492	43837	58137	58137					0.17096695561008346
VMRIKLPKI	9	Unmodified	_VMRIKLPKI_					0	0	0			REV__chr1:120425845-120427706|470|27.51|0.0|21.39|+|0|NBPF8,NBPF8|1	REV__chr1:120425845-120427706|470|27.51|0.0|21.39|+|0|NBPF8,NBPF8|1	MULTI-SECPEP	A375_MHC_IP_R2	2	365.945068359375	3	366.579095	1096.71546	-0.073841	-2.7068E-05	0.20893	7.6591E-05	0.13509	4.9522E-05	366.57922167670023	40.637	0.86399	41.412	41.133	41.997	0.77451					22	16	2	0	0	0	0.80332	1	15021	15021		2.4985	2.4985	1	1598200	+		59641	15662	43492	43837	58138	58138					0.17096695561008346
VMRIKLPKI	9	Unmodified	_VMRIKLPKI_					0	0	0			REV__chr1:120425845-120427706|470|27.51|0.0|21.39|+|0|NBPF8,NBPF8|1	REV__chr1:120425845-120427706|470|27.51|0.0|21.39|+|0|NBPF8,NBPF8|1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	366.579095	1096.71546	0.37381	0.00013703	0.19452	7.1305E-05	0.56832	0.00020834	366.57919568819904	42.445	0.60694	42.445	42.132	42.739	0	0	0	NaN	4.897	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	940640	+		59642	15662	43492	43837							0.17096695561008346
VMRIKLPKI	9	Unmodified	_VMRIKLPKI_					0	0	0			REV__chr1:120425845-120427706|470|27.51|0.0|21.39|+|0|NBPF8,NBPF8|1	REV__chr1:120425845-120427706|470|27.51|0.0|21.39|+|0|NBPF8,NBPF8|1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	366.579095	1096.71546	-0.10322	-3.7839E-05	0.37847	0.00013874	0.27524	0.0001009	366.579234176927	32.445	4.8754	33.182	32.857	37.733	0.73692	-0.14676	3.2507E-05	NaN	16.149	156	95	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7323700	+		59643	15662	43492	43837							0.17096695561008346
VMRQIKIVC	9	Unmodified	_VMRQIKIVC_					0	0	0			REV__ENST00000512062.5_1_16:69497047-69497263:+|nuORF	REV__ENST00000512062.5_1_16:69497047-69497263:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	545.716552734375	2	545.317197	1088.61984	-0.43356	-0.00023643	-1.3579	-0.00074048	-1.7915	-0.00097691	545.3162533936047	128.42	0.50682	128.42	128.07	128.58	0					25	9	3	0	0	0	0.80005	1	49198	49198		2.0598	0	1	34980000	+		59644	25622	43493	43838	58139	58139					0.07907599378449959
VMSSVELP	8	Unmodified	_VMSSVELP_					0	0	0		ENST00000368892.8_1_1:151162636-151162672:-|nuORF	ENST00000368892.8_1_1:151162636-151162672:-|nuORF	ENST00000368892.8_1_1:151162636-151162672:-|nuORF	MSMS	A375_MHC_IP_R1	1	431.2878723144531	2	431.222954	860.431355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.389	1	53.389	52.889	53.889	0								0	0	0	0.16876	1	19031	19031		18.135	3.5533	1				59645	11126	43494	43839	58140	58140					-0.004443549941697711
VMTWLVESL	9	Unmodified	_VMTWLVESL_					0	0	0			REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-SECPEP	A375_MHC_IP_R1	1	539.2445678710938	2	539.286085	1076.55762	-0.1449	-7.8143E-05	-0.70015	-0.00037758	-0.84505	-0.00045572	539.2856271762834	69.442	0.45865	69.442	69.07	69.529	0					10	7	2	0	0	0	0.55359	1	25212	25212		15.847	4.2069	1	2263500	+		59646	16308	43495	43840	58141	58141					0.022401515111141634
VMVDGKPVNL	10	Unmodified	_VMVDGKPVNL_					0	0	0		ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENSG00000169750|ENST00000306897|RAC3	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	536.7101440429688	2	536.296985	1070.57942	-1.1334	-0.00060785	0.094709	5.0792E-05	-1.0387	-0.00055706	536.2968167355523	57.893	0.40374	58.642	58.375	58.779	0.74894					10	7	2	0	0	0	0.77698	1	21866	21866		22.658	3.2191	1	1881100			59647	4769	43496	43841	58142	58142					0.04694956259686478
VMVKRVFNVH	10	Unmodified	_VMVKRVFNVH_					0	0	0			REV__ENST00000506478.1_1_4:103643970-103645033:-|nuORF	REV__ENST00000506478.1_1_4:103643970-103645033:-|nuORF	MSMS	A375_MHC_IP_R1	1	614.429931640625	2	614.852793	1227.69103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.11	1	122.11	121.61	122.61	0								0	0	0	0.15308	1	45404	45404		10.824	2.0785	1		+		59648	25553	43497	43842	58143	58143					0.0862943540746528
VMYGKVYRI	9	Unmodified	_VMYGKVYRI_					0	0	0		ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H	ENSG00000163882|ENST00000456318|POLR2H	ENSG00000163882|ENST00000456318|POLR2H	MULTI-SECPEP	A375_MHC_IP_R2	2	377.2792663574219	3	376.879322	1127.61614	0.26025	9.8084E-05	-0.40134	-0.00015126	-0.14109	-5.3173E-05	376.879149010711	42.026	0.35725	42.801	42.659	43.016	0.77451					15	6	3	0	0	0	0.3213	1	15650	15650		34.932	29.635	1	2671000			59649	6739	43498	43843	58144	58144					0.05743252876254701
VMYNLGERNK	10	Unmodified	_VMYNLGERNK_					0	0	0			REV__ENSG00000047936|ENST00000368507|ROS1	REV__ENSG00000047936|ENST00000368507|ROS1	MSMS	A375_MHC_IP_R2	2	612.3134765625	2	612.313697	1222.61284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.51	1	124.84	124.34	125.34	0.32969								0	0	0	0.15207	1	48186	48186		13.906	0.86358	1		+		59650	16367	43499	43844	58145	58145					0.01043958031573311
VNALHLYLWLF	11	Unmodified	_VNALHLYLWLF_					0	0	0		nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1;nc|ENSG00000100731|Q96RV3-2|PCNX1;ENST00000554879.5_1_14:71374480-71476401:+|nuORF	nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-MSMS	A375_MHC_IP_R1	1	463.99603271484375	3	463.595691	1387.76524	-0.075533	-3.5017E-05	0.91562	0.00042448	0.84009	0.00038946	463.5961528226173	43.311	0.35619	43.311	43.095	43.451	0					12	6	2	0	0	0	0.73636	1	15092	15092		2.8433	0.21205	1	2574400			59651	2214	43500	43845	58146	58146					0.08687101770647132
VNALHLYLWLF	11	Unmodified	_VNALHLYLWLF_					0	0	0		nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1;nc|ENSG00000100731|Q96RV3-2|PCNX1;ENST00000554879.5_1_14:71374480-71476401:+|nuORF	nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	463.595691	1387.76524	-0.075533	-3.5017E-05	0.91562	0.00042448	0.84009	0.00038946	463.5961528226173	43.311	0.35619	43.311	43.095	43.451	0	0.00857	-0.00023567	NaN	2.8433	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2574400			59652	2214	43500	43845							0.08687101770647132
VNALHLYLWLF	11	Unmodified	_VNALHLYLWLF_					0	0	0		nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1;nc|ENSG00000100731|Q96RV3-2|PCNX1;ENST00000554879.5_1_14:71374480-71476401:+|nuORF	nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-MATCH	A375_MHC_IP_R2	2		3	463.595691	1387.76524	-0.50138	-0.00023244	1.3067	0.0006058	0.80535	0.00037336	463.5962129717714	42.522	0.30458	43.294	43.065	43.369	0.7724	-0.00857	0.00030828	NaN	2.8433	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2188600			59653	2214	43500	43845							0.08687101770647132
VNDEKLKE	8	Unmodified	_VNDEKLKE_					0	0	0			REV__tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1	REV__tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	974.4568481445312	1	974.515302	973.508025	-0.27146	-0.00026454	0.2507	0.00024431	-0.020759	-2.023E-05	974.5154604169545	68.028	0.8604	68.028	67.704	68.565	0					41	16	4	0	0	0	0.77804	1	24545	24545		2.0598	0	1	19084000	+		59654	28452	43501	43846	58147	58147					0.02021159826665553
VNDEKLKE	8	Unmodified	_VNDEKLKE_					0	0	0			REV__tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1	REV__tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	974.515302	973.508025	-0.27146	-0.00026454	0.2507	0.00024431	-0.020759	-2.023E-05	974.5154604169545	68.028	0.8604	68.028	67.704	68.565	0	0.00089441	0.00031007	NaN	2.0598	41	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19084000	+		59655	28452	43501	43846							0.02021159826665553
VNDEKLKE	8	Unmodified	_VNDEKLKE_					0	0	0			REV__tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1	REV__tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		1	974.515302	973.508025	-0.047871	-4.6651E-05	-0.35353	-0.00034452	-0.4014	-0.00039117	974.5149211241894	67.29	0.76213	68.026	67.698	68.461	0.73631	-0.00089441	-0.00027876	NaN	2.0598	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24025000	+		59656	28452	43501	43846							0.02021159826665553
VNDFEFHV	8	Unmodified	_VNDFEFHV_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-SECPEP	A375_MHC_IP_R1	1	503.3104248046875	2	503.735074	1005.4556	-0.53781	-0.00027091	-0.60599	-0.00030526	-1.1438	-0.00057617	503.73465469714694	23.355	0.81303	23.355	22.924	23.737	0					24	15	2	0	0	0	0.96266	1	6551	6551		11.64	1.5664	1	2879500			59657	5023	43502	43847	58148	58148					-0.04691378516281475
VNDGDMRLAD	10	Unmodified	_VNDGDMRLAD_					0	0	0		ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	MULTI-SECPEP	A375_MHC_IP_R2	2	553.6505737304688	2	553.250763	1104.48697	-1.2516	-0.00069247	0.50553	0.00027968	-0.7461	-0.00041278	553.2511115378928	33.955	0.55562	34.707	34.298	34.853	0.75225					22	10	3	0	0	0	0.020374	1	12170	12170		105.35	63.506	1	14901000			59658	2829	43503	43848	58149	58149					-0.06109173544496116
VNDGDMRLAD	10	Oxidation (M)	_VNDGDM(Oxidation (M))RLAD_		VNDGDM(1)RLAD		VNDGDM(55)RLAD	0	0	1		ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	MULTI-SECPEP	A375_MHC_IP_R2	2	561.6476440429688	2	561.24822	1120.48189	-0.93352	-0.00052394	-0.027199	-1.5266E-05	-0.96072	-0.0005392	561.2482226074757	23.056	1.4242	23.686	23.164	24.588	0.63014					47	27	3	0	0	0	0.1776	1	7318	7318		55.467	29.199	1	4345000			59659	2829	43503	43849	58150	58150		129			-0.07353477407104947
VNDGDMRLADG	11	Oxidation (M)	_VNDGDM(Oxidation (M))RLADG_		VNDGDM(1)RLADG		VNDGDM(110)RLADG	0	0	1		ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	MULTI-MSMS	A375_MHC_IP_R1	1	590.1878051757812	2	589.758952	1177.50335	-0.49915	-0.00029438	0.1338	7.8912E-05	-0.36535	-0.00021547	589.7590859377095	23.31	1.2184	23.31	22.924	24.143	0					53	23	3	0	0	0	0.00082022	1	6507	6507		106.37	71.963	1	13771000			59660	2829	43504	43850	58151	58151		129			-0.07830092378412701
VNDGDMRLADG	11	Oxidation (M)	_VNDGDM(Oxidation (M))RLADG_		VNDGDM(1)RLADG		VNDGDM(110)RLADG	0	0	1		ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	MULTI-MSMS	A375_MHC_IP_R2	2	590.1588745117188	2	589.758952	1177.50335	-0.9158	-0.0005401	0.27585	0.00016268	-0.63995	-0.00037742	589.7591306849167	33.39	0.40642	34.142	33.942	34.348	0.75225					11	7	2	0	0	0	0.00066621	1	11988	11988		108.26	66.422	1	2835000			59661	2829	43504	43850	58152	58152		129			-0.07830092378412701
VNDGDMRLADG	11	Oxidation (M)	_VNDGDM(Oxidation (M))RLADG_		VNDGDM(1)RLADG		VNDGDM(95)RLADG	0	0	1		ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	MULTI-SECPEP	A375_MHC_IP_R2	2	590.1874389648438	2	589.758952	1177.50335	-0.89775	-0.00052945	0.10861	6.4055E-05	-0.78913	-0.0004654	589.7590795462462	23.015	1.4242	23.645	23.164	24.588	0.63014					49	27	3	0	0	0	0.022338	1	7406	7406		94.801	84.001	1	6558900			59662	2829	43504	43850	58153	58153		129			-0.07830092378412701
VNDGDMRLADG	11	Oxidation (M)	_VNDGDM(Oxidation (M))RLADG_					0	0	1		ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	MULTI-MATCH	A375_MHC_IP_R1	1		2	589.758952	1177.50335	-0.31298	-0.00018458	-0.35361	-0.00020855	-0.66659	-0.00039313	589.7587579394738	34.047	0.25523	34.047	33.898	34.154	0	-0.04722	-0.00063951	NaN	108.26	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1711700			59663	2829	43504	43850				129			-0.07830092378412701
VNDGDMRLADG	11	Unmodified	_VNDGDMRLADG_					0	0	0		ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	MULTI-MSMS	A375_MHC_IP_R1	1	582.1611938476562	2	581.761494	1161.50844	-0.21891	-0.00012735	-0.12249	-7.1262E-05	-0.3414	-0.00019862	581.7615489774233	33.982	0.55565	33.982	33.798	34.353	0					28	10	4	0	0	0	1.1602E-15	2	11170	11142;11170		194.76	144.83	1	18446000			59664	2829	43504	43851	58154;58155	58155					-0.06585788515781132
VNDGDMRLADG	11	Unmodified	_VNDGDMRLADG_					0	0	0		ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	MULTI-MSMS	A375_MHC_IP_R2	2	582.1611938476562	2	581.761494	1161.50844	-0.696	-0.0004049	0.1846	0.00010739	-0.51139	-0.00029751	581.761616377434	33.366	0.50768	34.118	33.891	34.399	0.75225					26	9	4	0	0	0	7.205999999999999E-21	1	11928	11928		209.96	151.28	1	23559000			59665	2829	43504	43851	58156	58156					-0.06585788515781132
VNDIYYRYAAS	11	Unmodified	_VNDIYYRYAAS_					0	0	0			REV__RIT1|p.D173N|1|0.27|ENSG00000143622|chr1:155900531-155900531|C/T|missense_variant	REV__RIT1|p.D173N|1|0.27|ENSG00000143622|chr1:155900531-155900531|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	445.6250915527344	3	445.550698	1333.63027	-0.69081	-0.00030779	-2.6735	-0.0011912	-3.3643	-0.001499	445.5498367785962	19.98	0.25241	20.591	20.399	20.651	0.61029					7	4	2	0	0	0	0.99625	1	6204	6204		4.7159	0.30977	1	481110	+		59666	27889	43505	43852	58157	58157					-0.023204231617455662
VNDNIDNVNVL	11	Unmodified	_VNDNIDNVNVL_					0	0	0			REV__nc|ENSG00000107736|Q9H251-4|CDH23	REV__nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	A375_MHC_IP_R1	1	615.2116088867188	2	614.812042	1227.60953	-0.6976	-0.00042889	0.32166	0.00019776	-0.37594	-0.00023113	614.8122173606384	38.145	0.56215	38.145	37.913	38.475	0					27	10	4	0	0	0	0.23666	1	12893	12893		51.63	9.6743	1	19248000	+		59667	17494	43506	43853	58158	58158					0.0048298645856448275
VNDNIDNVNVL	11	Unmodified	_VNDNIDNVNVL_					0	0	0			REV__nc|ENSG00000107736|Q9H251-4|CDH23	REV__nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	A375_MHC_IP_R2	2	615.2116088867188	2	614.812042	1227.60953	-0.9697	-0.00059618	0.28798	0.00017705	-0.68172	-0.00041913	614.8122264850067	37.45	0.71524	38.221	37.968	38.684	0.7709					32	13	4	0	0	0	0.23666	1	13677	13677		51.63	2.0755	1	20020000	+		59668	17494	43506	43853	58159	58159					0.0048298645856448275
VNDNIDNVNVL	11	Unmodified	_VNDNIDNVNVL_					0	0	0			REV__nc|ENSG00000107736|Q9H251-4|CDH23	REV__nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	614.812042	1227.60953	-0.6976	-0.00042889	0.32166	0.00019776	-0.37594	-0.00023113	614.8122173606384	38.145	0.56215	38.145	37.913	38.475	0	-0.037894	1.5048E-05	NaN	51.63	27	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19248000	+		59669	17494	43506	43853							0.0048298645856448275
VNDNIDNVNVL	11	Unmodified	_VNDNIDNVNVL_					0	0	0			REV__nc|ENSG00000107736|Q9H251-4|CDH23	REV__nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	614.812042	1227.60953	-0.9697	-0.00059618	0.28798	0.00017705	-0.68172	-0.00041913	614.8122264850067	37.45	0.71524	38.221	37.968	38.684	0.7709	0.037894	-2.6371E-05	NaN	51.63	32	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20020000	+		59670	17494	43506	43853							0.0048298645856448275
VNDNTPDFV	9	Unmodified	_VNDNTPDFV_					0	0	0		PCDHB7|p.A239T|1|0.2|ENSG00000113212|chr5:141173550-141173550|G/A|missense_variant	PCDHB7|p.A239T|1|0.2|ENSG00000113212|chr5:141173550-141173550|G/A|missense_variant	PCDHB7|p.A239T|1|0.2|ENSG00000113212|chr5:141173550-141173550|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	510.71502685546875	2	510.735271	1019.45599	-0.8241	-0.0004209	0.14163	7.2335E-05	-0.68247	-0.00034856	510.7353155063299	66.854	0.71122	67.591	67.24	67.951	0.73631					31	13	3	0	0	0	0.4867	2	25429	25330;25429		20.454	11.64	1	4286900			59671	15136	43507	43854	58160;58161	58161					-0.05296003587102405
VNDNWPVF	8	Unmodified	_VNDNWPVF_					0	0	0		CDH5|p.H142Y|1|0.38|ENSG00000179776|chr16:66387022-66387022|C/T|missense_variant;nc|ENSG00000179776|P33151-2|CDH5;ENSG00000179776|ENST00000341529|CDH5	CDH5|p.H142Y|1|0.38|ENSG00000179776|chr16:66387022-66387022|C/T|missense_variant	CDH5|p.H142Y|1|0.38|ENSG00000179776|chr16:66387022-66387022|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	495.6722106933594	2	495.737617	989.460681	-0.41867	-0.00020755	-0.6604	-0.00032738	-1.0791	-0.00053493	495.7371423572962	34.616	0.35426	34.616	34.405	34.759	0					10	6	2	0	0	0	0.71817	1	11418	11418		29.082	0.58707	1	2394500			59672	348	43508	43855	58162	58162					-0.03447074653672644
VNDVLNQRDAL	11	Unmodified	_VNDVLNQRDAL_					0	0	0		ENSG00000164080|ENST00000684192|RAD54L2;ENST00000487093.5_1_3:51624427-51671126:+|nuORF	ENSG00000164080|ENST00000684192|RAD54L2	ENSG00000164080|ENST00000684192|RAD54L2	MULTI-MSMS	A375_MHC_IP_R1	1	629.23291015625	2	628.833308	1255.65206	-0.59162	-0.00037203	0.29277	0.00018411	-0.29884	-0.00018792	628.8336253800195	50.774	0.45564	50.774	50.613	51.068	0					16	8	3	0	0	0	0.35749	1	18006	18006		42.312	10.275	1	3557000			59673	6773	43509	43856	58163	58163					0.03446381586809366
VNECGESIDRN	11	Unmodified	_VNECGESIDRN_					0	0	0		ENST00000481451.1_1_10:124172402-124177583:+|nuORF;nc|ENSG00000107679|Q9HB21-2|PLEKHA1;ENSG00000107679|ENST00000368990|PLEKHA1	ENST00000481451.1_1_10:124172402-124177583:+|nuORF	ENST00000481451.1_1_10:124172402-124177583:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	618.6690673828125	2	618.269684	1234.52481	-0.16156	-9.9889E-05	-0.28108	-0.00017378	-0.44264	-0.00027367	618.2694885247336	21.123	0.25281	21.123	20.946	21.199	0					8	4	2	0	0	0	0.59391	1	5514	5514		23.79	0	1	2741500			59674	2750	43510	43857	58164	58164					-0.08306707349697717
VNECGESIDRN	11	Unmodified	_VNECGESIDRN_					0	0	0		ENST00000481451.1_1_10:124172402-124177583:+|nuORF;nc|ENSG00000107679|Q9HB21-2|PLEKHA1;ENSG00000107679|ENST00000368990|PLEKHA1	ENST00000481451.1_1_10:124172402-124177583:+|nuORF	ENST00000481451.1_1_10:124172402-124177583:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	618.6693115234375	2	618.269684	1234.52481	-0.98889	-0.0006114	0.33501	0.00020713	-0.65388	-0.00040428	618.2699559857275	23.353	1.0671	23.983	23.47	24.537	0.63014					42	20	3	0	0	0	0.43152	1	7386	7386		36.506	0	1	5703200			59675	2750	43510	43857	58165	58165					-0.08306707349697717
VNECGESIDRN	11	Unmodified	_VNECGESIDRN_					0	0	0		ENST00000481451.1_1_10:124172402-124177583:+|nuORF;nc|ENSG00000107679|Q9HB21-2|PLEKHA1;ENSG00000107679|ENST00000368990|PLEKHA1	ENST00000481451.1_1_10:124172402-124177583:+|nuORF	ENST00000481451.1_1_10:124172402-124177583:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	618.269684	1234.52481	-0.16156	-9.9889E-05	-0.28108	-0.00017378	-0.44264	-0.00027367	618.2694885247336	21.123	0.25281	21.123	20.946	21.199	0	0	0	NaN	23.79	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2741500			59676	2750	43510	43857							-0.08306707349697717
VNEKLGELY	9	Unmodified	_VNEKLGELY_					0	0	0			REV__tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1	REV__tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	354.9357604980469	3	355.525602	1063.55498	0.10646	3.785E-05	-0.86458	-0.00030738	-0.75812	-0.00026953	355.85944026221625	20.46	0.30433	20.46	20.334	20.638	0					8	5	2	0	0	0	0.80005	1	5216	5216		0.23584	0.028987	1	612330	+		59677	28683	43511	43858	58166	58166					0.025740193778119647
VNENKEYRFT	10	Unmodified	_VNENKEYRFT_					0	0	0			REV__tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1	REV__tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	650.72021484375	2	650.320034	1298.62551	-0.26979	-0.00017545	0.09777	6.3582E-05	-0.17202	-0.00011187	650.3199001478472	55.98	0.76262	55.98	55.584	56.347	0					35	14	3	0	0	0	0.70925	1	20026	20026		8.1555	0	1	4218600	+		59678	28576	43512	43859	58167	58167					-0.011853073045585916
VNENKEYRFT	10	Unmodified	_VNENKEYRFT_					0	0	0			REV__tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1	REV__tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	650.320034	1298.62551	-0.26979	-0.00017545	0.09777	6.3582E-05	-0.17202	-0.00011187	650.3199001478472	55.98	0.76262	55.98	55.584	56.347	0	0.041007	7.9609E-05	NaN	8.1555	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4218600	+		59679	28576	43512	43859							-0.011853073045585916
VNENKEYRFT	10	Unmodified	_VNENKEYRFT_					0	0	0			REV__tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1	REV__tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	650.320034	1298.62551	-0.84546	-0.00054982	0.00064625	4.2027E-07	-0.84482	-0.0005494	650.3200291459152	55.147	0.86476	55.898	55.523	56.388	0.75075	-0.041007	-4.6714E-05	NaN	8.1555	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3170200	+		59680	28576	43512	43859							-0.011853073045585916
VNEVDQELY	9	Unmodified	_VNEVDQELY_					0	0	0			REV__nc|ENSG00000170921|Q9HCD6|TANC2	REV__nc|ENSG00000170921|Q9HCD6|TANC2	MSMS	A375_MHC_IP_R2	2	554.67333984375	2	554.761486	1107.50842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.759	1	79.504	79.004	80.004	0.74474								0	0	0	0.14677	1	29896	29896		26.884	9.9414	1		+		59681	21033	43513	43860	58168	58168					-0.04103465244133986
VNEVDVREVTH	11	Unmodified	_VNEVDVREVTH_					0	0	0		nc|ENSG00000132535|P78352-2|DLG4;nc|ENSG00000132535|P78352-3|DLG4;ENSG00000132535|ENST00000399506|DLG4	nc|ENSG00000132535|P78352-2|DLG4	nc|ENSG00000132535|P78352-2|DLG4	MULTI-MSMS	A375_MHC_IP_R1	1	649.2305908203125	2	648.830766	1295.64698	-0.32026	-0.0002078	0.3553	0.00023053	0.035039	2.2734E-05	648.8308895986435	60.134	0.45792	60.134	59.905	60.363	0					15	8	2	0	0	0	0.71476	1	21653	21653		14.405	0	1	2968100			59682	14605	43514	43861	58169	58169					0.010980777241684336
VNFEFPEFQL	10	Unmodified	_VNFEFPEFQL_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000426405.1_1_X:73629614-73629932:+|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MULTI-MSMS	A375_MHC_IP_R2	2	635.71044921875	2	635.311146	1268.60774	-0.74986	-0.0004764	0.35853	0.00022778	-0.39134	-0.00024862	635.3112663915092	132.14	0.40552	132.33	132.1	132.51	0.18953					9	7	3	0	0	0	0.2515	1	52008	52008		43.982	30.367	1	4843200			59683	7653	43515	43862	58170	58170					-0.015820225593643045
VNFEFPEFQL	10	Unmodified	_VNFEFPEFQL_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000426405.1_1_X:73629614-73629932:+|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	635.311146	1268.60774	-0.91779	-0.00058308	1.1284	0.00071688	0.2106	0.0001338	635.3118486127894	132.31	0.30382	132.31	132.18	132.49	0	-0.0095695	0.00013678	NaN	43.982	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5787000			59684	7653	43515	43862							-0.015820225593643045
VNGDEQEVDY	10	Unmodified	_VNGDEQEVDY_					0	0	0		ENSG00000027697|ENST00000367739|IFNGR1;nc|ENSG00000027697|P15260-2|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	MSMS	A375_MHC_IP_R1	1	584.166259765625	2	584.243657	1166.47276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.123	1	73.123	72.623	73.623	0								0	0	0	0.1524	1	26616	26616		13.042	3.6593	1				59685	1099	43516	43863	58171	58171					-0.10381547491806487
VNGKLVNQ	8	Unmodified	_VNGKLVNQ_					0	0	0			REV__tr|U7T235|U7T235_FUSNUYidE/YbjLduplicationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00532PE=3SV=1	REV__tr|U7T235|U7T235_FUSNUYidE/YbjLduplicationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00532PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	436.66583251953125	2	436.253434	870.492316	-0.089077	-3.886E-05	0.70912	0.00030936	0.62004	0.0002705	436.253559705891	40.346	0.25468	40.346	40.254	40.509	0					6	4	2	0	0	0	0.95423	1	13908	13908		12.532	0.89125	1	635690	+		59686	28718	43517	43864	58172	58172					0.051889181002820806
VNIKLTQNL	9	Unmodified	_VNIKLTQNL_					0	0	0			REV__ENSG00000153207|ENST00000648844|AHCTF1	REV__ENSG00000153207|ENST00000648844|AHCTF1	MULTI-SECPEP	A375_MHC_IP_R1	1	521.9669799804688	2	521.816399	1041.61824	-0.09916	-5.1743E-05	0.032769	1.7099E-05	-0.066391	-3.4644E-05	522.3180962750093	48.552	0.25294	48.552	48.426	48.679	0					6	4	2	0	0	0	0.65527	1	17105	17105		22.736	6.8891	1	1462000	+		59687	19832	43518	43865	58173	58173					0.0991000488568261
VNIMRTYTY	9	Oxidation (M)	_VNIM(Oxidation (M))RTYTY_		VNIM(1)RTYTY		VNIM(57)RTYTY	0	0	1		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-SECPEP	A375_MHC_IP_R1	1	588.1724853515625	2	588.789524	1175.56449	-0.42092	-0.00024783	-1.0895	-0.0006415	-1.5104	-0.00088933	588.7893944758953	40.999	0.35194	40.999	40.813	41.164	0					11	6	3	0	0	0	0.10495	1	14120	14120		57.249	13.391	1	1619700			59688	7257	43519	43866	58174	58174		370			-0.016265356083295046
VNIMRTYTY	9	Oxidation (M)	_VNIM(Oxidation (M))RTYTY_					0	0	1		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MATCH	A375_MHC_IP_R2	2		2	588.789524	1175.56449	-0.62528	-0.00036816	0.062609	3.6864E-05	-0.56267	-0.00033129	588.7892602440461	40.298	0.30376	41.073	40.879	41.183	0.77451	0.03717	0.00065031	NaN	57.249	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1926900			59689	7257	43519	43866				370			-0.016265356083295046
VNIMRTYTY	9	Unmodified	_VNIMRTYTY_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	A375_MHC_IP_R2	2	581.2205810546875	2	580.792066	1159.56958	-0.57629	-0.0003347	-0.45541	-0.0002645	-1.0317	-0.0005992	580.7917314345517	57.946	0.30138	58.695	58.578	58.879	0.74894					11	5	3	0	0	0	0.37385	1	21977	21977		33.445	11.908	1	2025000			59690	7257	43519	43867	58175	58175					-0.0038223174569793628
VNITLQSVGPV	11	Unmodified	_VNITLQSVGPV_					0	0	0		nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;EP400|p.Q738Kfs*2|1|0.09|ENSG00000183495|chr12:131986796-131986796|C/-|frameshift_variant	nc|ENSG00000183495|Q96L91-4|EP400	nc|ENSG00000183495|Q96L91-4|EP400	MULTI-SECPEP	A375_MHC_IP_R1	1	564.226318359375	2	563.826963	1125.63937	-0.42311	-0.00023856	-0.66083	-0.00037259	-1.0839	-0.00061115	563.8266336826763	74.933	0.50692	74.933	74.653	75.16	0					16	9	2	0	0	0	0.73984	1	27309	27309		36.506	10.238	1	2414000			59691	8499	43520	43868	58176	58176					0.08157970194565678
VNITLQSVGPV	11	Unmodified	_VNITLQSVGPV_					0	0	0		nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;EP400|p.Q738Kfs*2|1|0.09|ENSG00000183495|chr12:131986796-131986796|C/-|frameshift_variant	nc|ENSG00000183495|Q96L91-4|EP400	nc|ENSG00000183495|Q96L91-4|EP400	MULTI-SECPEP	A375_MHC_IP_R2	2	564.2266845703125	2	563.826963	1125.63937	-0.50784	-0.00028634	-0.11372	-6.4121E-05	-0.62157	-0.00035046	563.826668106003	74.031	0.50724	74.769	74.553	75.06	0.73752					19	9	3	0	0	0	0.78118	1	28137	28137		32.786	2.1491	1	1663000			59692	8499	43520	43868	58177	58177					0.08157970194565678
VNIVVRPISN	10	Unmodified	_VNIVVRPISN_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	A375_MHC_IP_R1	1	371.2926940917969	3	370.892507	1109.65569	0.11456	4.2489E-05	0.38095	0.00014129	0.49551	0.00018378	370.89260120037403	37.938	0.30636	37.938	37.812	38.118	0					16	5	4	0	0	0	0.94269	1	12856	12856		3.3196	0	1	5207100			59693	6242	43521	43869	58178	58178					0.10525096151332036
VNKIALELCTF	11	Unmodified	_VNKIALELCTF_					0	0	0		ENST00000553204.5_1_12:49497576-49504308:-|nuORF;ENST00000547670.5_1_12:49494396-49503620:-|nuORF;nc|ENSG00000139636|Q6UX01-5|LMBR1L;ENST00000550867.5_1_12:49494935-49504419:-|nuORF;nc|ENSG00000139636|Q6UX01-3|LMBR1L;nc|ENSG00000139636|Q6UX01-4|LMBR1L;nc|ENSG00000139636|Q6UX01-2|LMBR1L;ENSG00000139636|ENST00000267102|LMBR1L	ENST00000553204.5_1_12:49497576-49504308:-|nuORF	ENST00000553204.5_1_12:49497576-49504308:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	417.6476135253906	3	417.565291	1249.67404	0.014797	6.1788E-06	0.50912	0.00021259	0.52392	0.00021877	417.56551145122216	42.511	0.50891	43.284	43.014	43.523	0.7724					26	9	4	0	0	0	0.73016	1	15905	15905		8.7518	4.3456	1	5632300			59694	5096	43522	43870	58179	58179					0.05919470010985606
VNKKRMKLP	9	Unmodified	_VNKKRMKLP_					0	0	0			REV__ENST00000520492.5_1_8:106331916-106431494:+|nuORF	REV__ENST00000520492.5_1_8:106331916-106431494:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	371.2926940917969	3	371.902349	1112.68522	0.16647	6.191E-05	0.53768	0.00019996	0.70414	0.00026187	372.237052886294	37.838	0.56158	37.838	37.607	38.168	0					15	10	2	0	0	0	0.81254	1	12856	12856		0.23584	0	1	1181500	+		59695	25699	43523	43871	58180	58180					0.13338336895822067
VNKRNERGE	9	Unmodified	_VNKRNERGE_					0	0	0		ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11;ANKRD11|p.A1681Efs*5|1|0.79|ENSG00000167522|chr16:89281500-89281500|G/-|frameshift_variant;ANKRD11|p.T1707Rfs*12|1|0.86|ENSG00000167522|chr16:89281424-89281424|A/-|frameshift_variant;ENST00000378332.6_1_16:89353515-89371640:-|nuORF;ENST00000562275.5_1_16:89354878-89371640:-|nuORF;ENST00000540578.6_1_18:9182415-9235682:+|nuORF;nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENSG00000101745|ENST00000262126|ANKRD12	ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENST00000540578.6_1_18:9182415-9235682:+|nuORF;nc|ENSG00000101745|Q6UB98-2|ANKRD12	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	367.9238586425781	3	367.863499	1100.56867	-0.15667	-5.7631E-05	2.4843	0.00091389	2.3277	0.00085626	368.19849118041526	22.482	0.46024	23.107	22.851	23.311	0.6246					14	8	2	0	0	0	0.72507	1	7047	7047		2.7352	0.45242	1	852180			59696	7188;2319;13271	43524	43872	58181	58181					0.022406899296129268
VNKSIQKIR	9	Unmodified	_VNKSIQKIR_					0	0	0		tr|U7SUY3|U7SUY3_FUSNUDNAalkylationrepairenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01436PE=4SV=1	tr|U7SUY3|U7SUY3_FUSNUDNAalkylationrepairenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01436PE=4SV=1	tr|U7SUY3|U7SUY3_FUSNUDNAalkylationrepairenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01436PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	362.9256896972656	3	362.564502	1084.67168	0.10607	3.8458E-05	-0.36466	-0.00013221	-0.25858	-9.3753E-05	362.56431681649076	34.431	0.45404	34.431	34.203	34.657	0					21	8	3	0	0	0	0.70411	1	11279	11279		6.6304	0	1	13088000			59697	29779	43525	43873	58182	58182					0.1327280238822368
VNKSLPIS	8	Unmodified	_VNKSLPIS_					0	0	0			REV__ENST00000460500.1_1_1:85136304-85136920:-|nuORF	REV__ENST00000460500.1_1_1:85136304-85136920:-|nuORF	MSMS	A375_MHC_IP_R1	1	429.291259765625	2	429.258185	856.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.62	1	140.62	140.12	141.12	0								0	0	0	0.16876	1	54006	54006		2.3027	0	1		+		59698	17997	43526	43874	58183	58183					0.0678268638581585
VNKVFTAVNI	10	Unmodified	_VNKVFTAVNI_					0	0	0		ENSG00000003989|ENST00000494857|SLC7A2;nc|ENSG00000003989|P52569-2|SLC7A2;nc|ENSG00000003989|P52569-3|SLC7A2	ENSG00000003989|ENST00000494857|SLC7A2	ENSG00000003989|ENST00000494857|SLC7A2	MULTI-MSMS	A375_MHC_IP_R2	2	552.695068359375	2	552.824224	1103.63389	-0.69996	-0.00038695	0.45343	0.00025067	-0.24653	-0.00013629	552.8244466843075	109.15	1.2739	109.9	109.52	110.79	0.74684					66	24	5	0	0	0	0.54537	1	41396	41396		28.495	3.5035	1	49302000			59699	862	43527	43875	58184	58184					0.08622291402753035
VNKYRQRLV	9	Unmodified	_VNKYRQRLV_					0	0	0			REV__ENSG00000141096|ENST00000268793|DPEP3	REV__ENSG00000141096|ENST00000268793|DPEP3	MULTI-MSMS	A375_MHC_IP_R2	2	392.6289367675781	3	392.571768	1174.69348	-0.6433	-0.00025254	0.43617	0.00017123	-0.20713	-8.1312E-05	392.57195241881595	25.658	0.55791	26.318	26.044	26.602	0.65992					24	10	3	0	0	0	0.75032	1	8580	8580		2.4985	0	1	5388900	+		59700	19245	43528	43876	58185	58185					0.11311607136781276
VNLEEQMPV	9	Unmodified	_VNLEEQMPV_					0	0	0		BMX|p.T72M|1|0.31|ENSG00000102010|chrX:15509405-15509405|C/T|missense_variant	BMX|p.T72M|1|0.31|ENSG00000102010|chrX:15509405-15509405|C/T|missense_variant	BMX|p.T72M|1|0.31|ENSG00000102010|chrX:15509405-15509405|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	530.1624755859375	2	529.762975	1057.5114	-0.53964	-0.00028588	-0.46443	-0.00024604	-1.0041	-0.00053191	529.7627288032693	125.55	0.30185	125.85	125.72	126.02	0.2951					7	5	2	0	0	0	0.74412	1	49074	49074		14.838	4.7643	1	10011000			59701	240	43529	43877	58186	58186					-0.01505913390974456
VNLESHFII	9	Unmodified	_VNLESHFII_					0	0	0			REV__GRM7|p.P852S|1|0.24|ENSG00000196277|chr3:7680151-7680151|C/T|missense_variant	REV__GRM7|p.P852S|1|0.24|ENSG00000196277|chr3:7680151-7680151|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	357.6369323730469	3	357.865958	1070.57605	-0.28807	-0.00010309	-0.53881	-0.00019282	-0.82689	-0.00029591	357.8657416135201	55.7	0.35363	56.45	56.186	56.54	0.75031					10	6	2	0	0	0	0.74651	1	21000	21000		8.7454	8.7454	1	875300	+		59702	26717	43530	43878	58187	58187					0.04358029477339187
VNLFGRMYPLK	11	Unmodified	_VNLFGRMYPLK_					0	0	0			REV__nc|ENSG00000118276|Q9UBX8-2|B4GALT6	REV__nc|ENSG00000118276|Q9UBX8-2|B4GALT6	MSMS	A375_MHC_IP_R2	2	669.7728881835938	2	669.373558	1336.73256	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.64	1	113.36	112.86	113.86	0.72458								0	0	0	0.16302	1	42459	42459		2.9952	0	1		+		59703	18034	43531	43879	58188	58188					0.07766571376146203
VNLKGGVPL	9	Unmodified	_VNLKGGVPL_					0	0	0			REV__STAT5A|p.L355P|1|0.49|ENSG00000126561|chr17:42301349-42301349|T/C|missense_variant	REV__STAT5A|p.L355P|1|0.49|ENSG00000126561|chr17:42301349-42301349|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	449.18157958984375	2	448.781828	895.549102	0.05034	2.2592E-05	-0.19022	-8.5367E-05	-0.13988	-6.2775E-05	448.78171943910485	42.612	0.45482	42.612	42.386	42.841	0					14	8	2	0	0	0	0.3607	1	14780	14780		34.102	3.8776	1	4836200	+		59704	28056	43532	43880	58189	58189					0.09714965656814911
VNLLLLFRLLS	11	Unmodified	_VNLLLLFRLLS_					0	0	0			REV__nc|ENSG00000167608|Q7Z404-1|TMC4	REV__nc|ENSG00000167608|Q7Z404-1|TMC4	MSMS	A375_MHC_IP_R1	1	650.6080932617188	2	650.921198	1299.82784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.27	1	102.27	101.77	102.77	0								0	0	0	0.16302	1	37583	37583		2.9952	1.3426	1		+		59705	20776	43533	43881	58190	58190					0.18992247838855292
VNLLNQYSL	9	Unmodified	_VNLLNQYSL_					0	0	0			REV__ENSG00000167117|ENST00000450727|ANKRD40CL	REV__ENSG00000167117|ENST00000450727|ANKRD40CL	MULTI-SECPEP	A375_MHC_IP_R2	2	532.6922607421875	2	532.292756	1062.57096	-0.90471	-0.00048157	0.27572	0.00014677	-0.62899	-0.00033481	532.2929428652801	65.908	0.5088	66.646	66.375	66.884	0.73811					20	9	3	0	0	0	0.71341	1	25021	25021		13.042	0	1	1753600	+		59706	20734	43534	43882	58191	58191					0.04217725614716983
VNLPLHITSIL	11	Unmodified	_VNLPLHITSIL_					0	0	0		nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30;nc|ENSG00000186517|Q7Z6I6-3|ARHGAP30;ENSG00000186517|ENST00000368013|ARHGAP30	nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30	nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30	MSMS	A375_MHC_IP_R2	2	610.5838623046875	2	610.374081	1218.73361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.79	1	135.9	135.4	136.4	0.11134								0	0	0	0.16302	1	53362	53362		2.9952	1.3426	1				59707	8756	43535	43883	58192	58192					0.1329910901670246
VNLPNKSSI	9	Unmodified	_VNLPNKSSI_					0	0	0		nc|ENSG00000110693|P35712-4|SOX6;nc|ENSG00000110693|P35712-2|SOX6;nc|ENSG00000110693|P35712-3|SOX6;ENSG00000110693|ENST00000683767|SOX6	nc|ENSG00000110693|P35712-4|SOX6	nc|ENSG00000110693|P35712-4|SOX6	MULTI-SECPEP	A375_MHC_IP_R2	2	485.6566467285156	2	486.279649	970.544745	-0.53987	-0.00026253	0.52021	0.00025297	-0.019656	-9.5585E-06	486.2800129210035	48.197	0.7046	48.955	48.729	49.434	0.75737					22	13	2	0	0	0	0.4261	1	18093	18093		30.637	0	1	3432200			59708	2938	43536	43884	58193	58193					0.05829456443234449
VNLPNRVQ	8	Unmodified	_VNLPNRVQ_					0	0	0			REV__ENSG00000128000|ENST00000434248|ZNF780B	REV__ENSG00000128000|ENST00000434248|ZNF780B	MULTI-MSMS	A375_MHC_IP_R1	1	470.6720886230469	2	470.272158	938.529764	-0.33611	-0.00015806	0.035948	1.6905E-05	-0.30016	-0.00014116	470.27205781242617	128.66	1.7278	128.66	128.28	130.01	0					76	33	5	0	0	0	0.77797	1	49605	49605		2.3027	0	1	266110000	+		59709	18439	43537	43885	58194	58194					0.05804009365908769
VNLPPELRRQ	10	Unmodified	_VNLPPELRRQ_					0	0	0		ENST00000582931.5_1_17:16836228-16875389:-|nuORF;nc|ENSG00000240505|O14836-3|TNFRSF13B;ENST00000581616.2_1_17:16844708-16875389:-|nuORF;nc|ENSG00000240505|O14836-2|TNFRSF13B;ENSG00000240505|ENST00000261652|TNFRSF13B	ENST00000582931.5_1_17:16836228-16875389:-|nuORF	ENST00000582931.5_1_17:16836228-16875389:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	408.306640625	3	407.906928	1220.69895	-0.39332	-0.00016044	-0.66139	-0.00026979	-1.0547	-0.00043022	407.90655726928014	130.22	2.1808	130.22	129.35	131.53	0					103	42	4	0	0	0	0.72416	2	50064	50064;50631		0.62683	0.17231	1	41912000			59710	9774	43538	43886	58195;58196	58195					0.09743285928584555
VNLRLQLSVS	10	Unmodified	_VNLRLQLSVS_					0	0	0		ENSG00000078898|ENST00000170150|BPIFB2	ENSG00000078898|ENST00000170150|BPIFB2	ENSG00000078898|ENST00000170150|BPIFB2	MSMS	A375_MHC_IP_R1	1	564.7362060546875	2	564.840405	1127.66626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.61	1	136.61	136.11	137.11	0								0	0	0	0.15531	1	52615	52615		3.5965	0.31518	1				59711	1685	43539	43887	58197	58197					0.1075307880573746
VNLSQQGCS	9	Unmodified	_VNLSQQGCS_					0	0	0			REV__ENSG00000138944|ENST00000381176|SHISAL1	REV__ENSG00000138944|ENST00000381176|SHISAL1	MULTI-SECPEP	A375_MHC_IP_R1	1	468.46636962890625	2	468.216192	934.41783	-0.55399	-0.00025938	-0.2054	-9.6172E-05	-0.75939	-0.00035556	468.2159021074978	23.317	0.66224	23.317	23.227	23.889	0					14	12	2	0	0	0	0.75164	1	6419	6419		9.3831	2.66	1	1450900	+		59712	19129	43540	43888	58198	58198					-0.05200212773399926
VNLTIQNR	8	Unmodified	_VNLTIQNR_					0	0	0		ENST00000484010.1_1_12:32101431-32101545:+|nuORF	ENST00000484010.1_1_12:32101431-32101545:+|nuORF	ENST00000484010.1_1_12:32101431-32101545:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	478.66900634765625	2	479.277441	956.540328	-0.50087	-0.00024006	-0.34796	-0.00016677	-0.84883	-0.00040683	479.27702608204726	119.7	0.76272	120.23	119.79	120.55	0.5321					22	14	2	0	0	0	0.972	1	45431	45431		4.756	2.6963	1	9848800			59713	12552	43541	43889	58199	58199					0.06031992020314192
VNPTKLFRF	9	Unmodified	_VNPTKLFRF_					0	0	0			REV__ENST00000537120.5_1_11:61091345-61100440:-|nuORF	REV__ENST00000537120.5_1_11:61091345-61100440:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	374.58587646484375	3	374.553715	1120.63931	0.36809	0.00013787	-0.98292	-0.00036816	-0.61483	-0.00023029	374.5530621969089	37.376	1.323	37.376	36.845	38.168	0					41	25	2	0	0	0	0.6898	1	12401	12401		8.1555	3.2585	1	4235200	+		59714	25919	43542	43890	58200	58200					0.08382014985227215
VNQFSRYIEN	10	Unmodified	_VNQFSRYIEN_					0	0	0			REV__nc|ENSG00000079263|Q13342-3|SP140	REV__nc|ENSG00000079263|Q13342-3|SP140	MULTI-SECPEP	A375_MHC_IP_R1	1	424.27886962890625	3	423.878926	1268.61495	-0.1765	-7.4814E-05	1.1748	0.00049799	0.99835	0.00042318	423.87928666235007	40.127	0.61282	40.127	39.845	40.458	0					22	11	3	0	0	0	0.90513	1	13760	13760		10.899	6.7823	1	5878600	+		59715	16726	43543	43891	58201	58201					-0.008612899589252265
VNRECEGGIEN	11	Unmodified	_VNRECEGGIEN_					0	0	0			REV__ENSG00000105738|ENST00000222345|SIPA1L3	REV__ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-MSMS	A375_MHC_IP_R1	1	610.6719360351562	2	610.272226	1218.5299	-0.35822	-0.00021861	-0.069678	-4.2522E-05	-0.4279	-0.00026114	610.2722284190662	34.156	0.55798	34.156	33.898	34.456	0					24	10	3	0	0	0	0.16228	1	11207	11207		59.368	9.8411	1	13514000	+		59716	17408	43544	43892	58202	58202					-0.07062403487066149
VNRECEGGIEN	11	Unmodified	_VNRECEGGIEN_					0	0	0			REV__ENSG00000105738|ENST00000222345|SIPA1L3	REV__ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-MSMS	A375_MHC_IP_R2	2	610.6716918945312	2	610.272226	1218.5299	-0.92006	-0.00056149	-0.00613	-3.741E-06	-0.92619	-0.00056523	610.2722689450835	33.519	0.76072	34.271	33.992	34.753	0.75225					33	14	4	0	0	0	0.11203	1	11996	11996		67.838	16.208	1	22038000	+		59717	17408	43544	43892	58203	58203					-0.07062403487066149
VNRECEGGIEN	11	Unmodified	_VNRECEGGIEN_					0	0	0			REV__ENSG00000105738|ENST00000222345|SIPA1L3	REV__ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	610.272226	1218.5299	-0.35822	-0.00021861	-0.069678	-4.2522E-05	-0.4279	-0.00026114	610.2722284190662	34.156	0.55798	34.156	33.898	34.456	0	-0.057625	-4.0199E-05	NaN	67.838	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13514000	+		59718	17408	43544	43892							-0.07062403487066149
VNRECEGGIEN	11	Unmodified	_VNRECEGGIEN_					0	0	0			REV__ENSG00000105738|ENST00000222345|SIPA1L3	REV__ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	610.272226	1218.5299	-0.92006	-0.00056149	-0.00613	-3.741E-06	-0.92619	-0.00056523	610.2722689450835	33.519	0.76072	34.271	33.992	34.753	0.75225	0.057625	3.7364E-05	NaN	67.838	33	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22038000	+		59719	17408	43544	43892							-0.07062403487066149
VNRILKVAKP	10	Unmodified	_VNRILKVAKP_					0	0	0		ENSG00000135040|ENST00000361671|NAA35	ENSG00000135040|ENST00000361671|NAA35	ENSG00000135040|ENST00000361671|NAA35	MULTI-SECPEP	A375_MHC_IP_R2	2	1138.0467529296875	1	1137.74664	1136.73936	0.084721	9.6391E-05	1.5454	0.0017583	1.6301	0.0018547	1137.7508501702262	106.66	0.7128	107.42	106.83	107.55	0.75977					25	13	3	0	0	0	0.94862	1	40181	40181		1.6526	1.1279	1	1989200			59720	4635	43545	43893	58204	58204					0.1764625231901391
VNRIQLGQ	8	Unmodified	_VNRIQLGQ_					0	0	0		ENST00000465952.5_1_13:31205167-31205455:+|nuORF	ENST00000465952.5_1_13:31205167-31205455:+|nuORF	ENST00000465952.5_1_13:31205167-31205455:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	927.786865234375	1	927.53704	926.529764	-0.20216	-0.00018751	3.3339	0.0030923	3.1317	0.0029048	927.5399469586598	118.7	0.60683	119.31	119.1	119.71	0.60909					14	11	2	0	0	0	0.972	1	45268	45268		4.756	3.9624	1	16149000			59721	12253	43546	43894	58205	58205					0.06356009365890714
VNRRRRKKRKP	11	Unmodified	_VNRRRRKKRKP_					0	0	0			REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF	REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF	MSMS	A375_MHC_IP_R1	1	747.4888916015625	2	747.489834	1492.96511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.115	1	92.115	91.615	92.615	0								0	0	0	0.16353	1	33849	33849		0.35063	0.35063	1		+		59722	20223	43547	43895	58206	58206					0.23835014281598887
VNRVWTELI	9	Unmodified	_VNRVWTELI_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MSMS	A375_MHC_IP_R2	2	565.2181396484375	2	565.321848	1128.62914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.935	1	74.672	74.172	75.172	0.73752								0	0	0	0.15486	1	28063	28063		10.824	0	1				59723	6694	43548	43896	58207	58207					0.0699740725999618
VNSEQLDY	8	Unmodified	_VNSEQLDY_					0	0	0			REV__ENSG00000125354|ENST00000394610|SEPTIN6	REV__ENSG00000125354|ENST00000394610|SEPTIN6	MULTI-MSMS	A375_MHC_IP_R1	1	485.1924133300781	2	484.221997	966.429441	-0.29011	-0.00014048	0.009658	4.6766E-06	-0.28045	-0.0001358	484.22199798540925	61.665	0.61274	61.665	61.382	61.994	0					25	11	3	0	0	0	0.77624	1	22310	22310		8.5933	0	1	8699700	+		59724	18336	43549	43897	58208	58208					-0.05511692478421537
VNSNEVGSIMD	11	Unmodified	_VNSNEVGSIMD_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	A375_MHC_IP_R2	2	583.163818359375	2	582.763703	1163.51285	-0.44801	-0.00026108	0.72833	0.00042445	0.28032	0.00016336	582.7639630563567	75.051	0.6591	75.789	75.416	76.075	0.73751					28	12	3	0	0	0	0.45155	1	28472	28472		34.932	3.6637	1	7086900	+		59725	20465	43550	43898	58209	58209					-0.06236324092878931
VNSNQSAPTI	10	Unmodified	_VNSNQSAPTI_					0	0	0		tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1	tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1	tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1614379882812	2	515.76182	1029.50909	-0.68303	-0.00035228	-0.24873	-0.00012828	-0.93176	-0.00048057	515.7616913016519	91.174	0.45554	91.174	90.997	91.452	0					14	8	2	0	0	0	0.85226	1	33525	33525		10.074	0	1	2022400			59726	30026	43551	43899	58210	58210					-0.004486258044153146
VNSWLRQIRKK	11	Unmodified	_VNSWLRQIRKK_					0	0	0			REV__ENST00000461933.1_1_3:169684610-169686205:+|nuORF	REV__ENST00000461933.1_1_3:169684610-169686205:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	476.3558044433594	3	476.624643	1426.8521	-0.34129	-0.00016267	-0.081673	-3.8927E-05	-0.42296	-0.0002016	476.62447280176235	149.27	0.45212	149.29	149.01	149.46	0.01825					10	8	2	0	0	0	1.0015	1	57865	57865		0	0	1	63679	+		59727	24981	43552	43900	58211	58211					0.15574901045033585
VNTEKLTAF	9	Unmodified	_VNTEKLTAF_					0	0	0		ENSG00000159352|ENST00000368884|PSMD4;nc|ENSG00000159352|P55036-2|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF	ENSG00000159352|ENST00000368884|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL	nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-SECPEP	A375_MHC_IP_R1	1	512.1791381835938	2	511.779482	1021.54441	-0.4911	-0.00025134	1.0289	0.00052656	0.53777	0.00027522	511.78017412921713	52.394	0.60935	52.394	51.982	52.592	0					17	11	2	0	0	0	0.03341	1	18673	18673		74.2	46.571	1	2974600			59728	12500;6368	43553	43901	58212	58212					0.03450036723359062
VNTIHNTSDY	10	Unmodified	_VNTIHNTSDY_					0	0	0		TBC1D31|p.I31T|1|0.04|ENSG00000156787|chr8:123077125-123077125|T/C|missense_variant	TBC1D31|p.I31T|1|0.04|ENSG00000156787|chr8:123077125-123077125|T/C|missense_variant	TBC1D31|p.I31T|1|0.04|ENSG00000156787|chr8:123077125-123077125|T/C|missense_variant	MSMS	A375_MHC_IP_R1	1	582.155029296875	2	582.27001	1162.52547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.37	1	127.37	126.87	127.87	0								0	0	0	0.15332	1	48802	48802		10.074	0.72649	1				59729	29305	43554	43902	58213	58213					-0.04929544638321204
VNTQDVITV	9	Unmodified	_VNTQDVITV_					0	0	0			REV__nc|ENSG00000128513|Q9NUX5-2|POT1	REV__nc|ENSG00000128513|Q9NUX5-2|POT1	MULTI-SECPEP	A375_MHC_IP_R1	1	495.1686706542969	2	494.769114	987.523675	-0.15298	-7.5692E-05	-0.25676	-0.00012704	-0.40975	-0.00020273	494.76904919437897	92.983	0.66154	92.983	92.668	93.329	0					25	12	3	0	0	0	0.24548	1	34148	34148		52.268	0	1	2570200	+		59730	18451	43555	43903	58214	58214					0.02941446343709231
VNVFFPHFKY	10	Unmodified	_VNVFFPHFKY_					0	0	0		nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-7|UEVLD;ENST00000535340.5_1_11:18591643-18610207:-|nuORF;nc|ENSG00000151116|Q8IX04-5|UEVLD	nc|ENSG00000151116|Q8IX04-3|UEVLD	nc|ENSG00000151116|Q8IX04-3|UEVLD	MULTI-MSMS	A375_MHC_IP_R2	2	649.2298583984375	2	649.340041	1296.66553	-1.0738	-0.00069728	-1.9006	-0.0012342	-2.9745	-0.0019314	649.3383857579569	59.78	0.85715	60.527	59.946	60.804	0.74714					30	16	3	0	0	0	0.69871	1	22523	22523		14.838	0	1	10080000			59731	5880	43556	43904	58215	58215					0.02906284156711081
VNVHLPCP	8	Unmodified	_VNVHLPCP_					0	0	0			REV__nc|ENSG00000106948|Q7Z591-2|AKNA	REV__nc|ENSG00000106948|Q7Z591-2|AKNA	MULTI-SECPEP	A375_MHC_IP_R2	2	440.397705078125	2	439.73128	877.448008	-0.64195	-0.00028229	2.8581	0.0012568	2.2161	0.00097451	439.7323035614568	28.227	0.30387	28.905	28.808	29.112	0.67857					6	5	2	0	0	0	0.97144	1	9777	9777		9.3474	0.75416	1	790760	+		59732	17471	43557	43905	58216	58216					0.004381906824505677
VNVLQQVVL	9	Unmodified	_VNVLQQVVL_					0	0	0			REV__ENSG00000158158|ENST00000377075|CNNM4	REV__ENSG00000158158|ENST00000377075|CNNM4	MULTI-MSMS	A375_MHC_IP_R2	2	506.713134765625	2	506.313492	1010.61243	-0.69631	-0.00035255	-0.70028	-0.00035456	-1.3966	-0.00070712	506.3133299067568	83.387	1.8815	84.127	83.344	85.225	0.73962					111	36	4	0	0	0	0.32899	1	31617	31617		28.487	1.6032	1	100580000	+		59733	20065	43558	43906	58217	58217					0.1075490637402936
VNVPKTRRTF	10	Unmodified	_VNVPKTRRTF_					0	0	0		ENSG00000165502|ENST00000298289|RPL36AL;ENSG00000241343|ENST00000553110|RPL36A	ENSG00000165502|ENST00000298289|RPL36AL	ENSG00000165502|ENST00000298289|RPL36AL	MULTI-MSMS	A375_MHC_IP_R1	1	406.9752197265625	3	406.57529	1216.70404	0.054957	2.2344E-05	0.090632	3.6849E-05	0.14559	5.9193E-05	406.57530896226166	22.102	0.45696	22.102	21.911	22.368	0					22	8	4	0	0	0	0.38461	1	5896	5896		35.08	7.9913	1	8699400			59734	6960	43559	43907	58218	58218					0.1043558979122281
VNVPKTRRTF	10	Unmodified	_VNVPKTRRTF_					0	0	0		ENSG00000165502|ENST00000298289|RPL36AL;ENSG00000241343|ENST00000553110|RPL36A	ENSG00000165502|ENST00000298289|RPL36AL	ENSG00000165502|ENST00000298289|RPL36AL	MULTI-MSMS	A375_MHC_IP_R2	2	406.9751281738281	3	406.57529	1216.70404	-0.31338	-0.00012741	-0.23733	-9.6493E-05	-0.55071	-0.0002239	406.5752343402975	20.514	0.7125	21.125	20.752	21.464	0.61029					29	13	3	0	0	0	0.51689	2	6342	6304;6342		27.088	5.2889	1	6179700			59735	6960	43559	43907	58219;58220	58220					0.1043558979122281
VNVRVIVSV	9	Unmodified	_VNVRVIVSV_					0	0	0		ENSG00000113971|ENST00000337331|NPHP3;nc|ENSG00000113971|Q7Z494-6|NPHP3	ENSG00000113971|ENST00000337331|NPHP3	ENSG00000113971|ENST00000337331|NPHP3	MULTI-SECPEP	A375_MHC_IP_R2	2	493.2129821777344	2	492.813659	983.612765	-0.53799	-0.00026513	-0.046255	-2.2795E-05	-0.58424	-0.00028792	492.8135615833958	75.311	0.56056	76.052	75.825	76.385	0.74052					23	10	3	0	0	0	0.064992	1	28583	28583		78.149	20.678	1	7997200			59736	3189	43560	43908	58221	58221					0.12030326093906751
VNYAMHFY	8	Unmodified	_VNYAMHFY_					0	0	0			REV__ENSG00000128973|ENST00000249806|CLN6	REV__ENSG00000128973|ENST00000249806|CLN6	MSMS	A375_MHC_IP_R2	2	522.5357055664062	2	522.73402	1043.45349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.491	1	45.26	44.76	45.76	0.7691								0	0	0	0.16876	1	16607	16607		5.7604	0.46354	1		+		59737	18477	43561	43909	58222	58222					-0.06650130525758868
VNYEPIREW	9	Unmodified	_VNYEPIREW_					0	0	0			REV__ENST00000502926.1_2_5:140806427-140807822:+|nuORF	REV__ENST00000502926.1_2_5:140806427-140807822:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	603.662841796875	2	603.301113	1204.58767	-0.51852	-0.00031282	-0.14537	-8.7704E-05	-0.66389	-0.00040053	603.7999873017905	91.218	0.30273	91.218	90.997	91.299	0					11	5	3	0	0	0	0.73363	1	33509	33509		6.7232	0	1	1610000	+		59738	25510	43562	43910	58223	58223					-0.006437734993596678
VNYKDSYRRRI	11	Unmodified	_VNYKDSYRRRI_					0	0	0			REV__nc|ENSG00000285708|Q9H334-6|FOXP1	REV__nc|ENSG00000285708|Q9H334-6|FOXP1	MULTI-MSMS	A375_MHC_IP_R1	1	490.62188720703125	3	490.603908	1468.78989	-0.32614	-0.00016	-0.98082	-0.0004812	-1.307	-0.0006412	490.6033400272422	34.097	0.50584	34.097	33.848	34.353	0					22	9	4	0	0	0	0.73795	1	11140	11140		1.3296	0	1	4781500	+		59739	17845	43563	43911	58224	58224					0.07425129906050643
VNYKDSYRRRI	11	Unmodified	_VNYKDSYRRRI_					0	0	0			REV__nc|ENSG00000285708|Q9H334-6|FOXP1	REV__nc|ENSG00000285708|Q9H334-6|FOXP1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	490.603908	1468.78989	-0.32614	-0.00016	-0.98082	-0.0004812	-1.307	-0.0006412	490.6033400272422	34.097	0.50584	34.097	33.848	34.353	0	-0.057768	2.9092E-05	NaN	1.3296	22	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4781500	+		59740	17845	43563	43911							0.07425129906050643
VNYKDSYRRRI	11	Unmodified	_VNYKDSYRRRI_					0	0	0			REV__nc|ENSG00000285708|Q9H334-6|FOXP1	REV__nc|ENSG00000285708|Q9H334-6|FOXP1	MULTI-MATCH	A375_MHC_IP_R2	2		3	490.603908	1468.78989	-0.90205	-0.00044255	-1.0127	-0.00049682	-1.9147	-0.00093937	490.6034401796846	33.461	0.50768	34.213	33.891	34.399	0.75225	0.057768	-1.777E-05	NaN	1.3296	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4303800	+		59741	17845	43563	43911							0.07425129906050643
VNYVVKNAL	9	Unmodified	_VNYVVKNAL_					0	0	0			REV__ENST00000483837.1_1_22:41936547-41940441:-|nuORF	REV__ENST00000483837.1_1_22:41936547-41940441:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	511.2081298828125	2	510.297842	1018.58113	-0.42456	-0.00021665	-0.061119	-3.1189E-05	-0.48568	-0.00024784	510.2978984438674	93.855	0.70768	93.855	93.433	94.14	0					32	13	3	0	0	0	0.38603	1	34440	34440		25.399	0	1	6747500	+		59742	17088	43564	43912	58225	58225					0.07258333339939327
VNYVVKNAL	9	Unmodified	_VNYVVKNAL_					0	0	0			REV__ENST00000483837.1_1_22:41936547-41940441:-|nuORF	REV__ENST00000483837.1_1_22:41936547-41940441:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	510.297842	1018.58113	-0.67345	-0.00034366	0.31878	0.00016267	-0.35467	-0.00018099	510.2980584705784	92.906	0.71014	93.645	93.291	94.001	0.73902	-0.10465	0.00022413	NaN	25.399	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8553400	+		59743	17088	43564	43912							0.07258333339939327
VPAFGVRV	8	Unmodified	_VPAFGVRV_					0	0	0			REV__ENST00000474320.1_1_13:43597495-43597696:+|nuORF	REV__ENST00000474320.1_1_13:43597495-43597696:+|nuORF	MSMS	A375_MHC_IP_R2	2	422.6778564453125	2	422.755613	843.496673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.594	1	98.35	97.85	98.85	0.75586								0	0	0	0.16876	1	37040	37040		2.8892	0	1		+		59744	25159	43565	43913	58226	58226					0.06866427313843815
VPAFLLIG	8	Unmodified	_VPAFLLIG_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000514031.5_1_4:2932567-2933551:-|nuORF	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	A375_MHC_IP_R2	2	829.9183959960938	1	829.518202	828.510926	-0.58539	-0.00048559	0.54945	0.00045578	-0.03594	-2.9813E-05	829.5184390302968	147.03	0.11575	147.05	147	147.11	0.019913					23	14	2	0	0	0	0.77861	1	57227	57227		0	0	1	133510			59745	2887	43566	43914	58227	58227					0.08981079742147813
VPAFLLLK	8	Unmodified	_VPAFLLLK_					0	0	0			REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A	REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A	MSMS	A375_MHC_IP_R1	1	451.18988037109375	2	450.799489	899.584425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.04	1	18.04	17.54	18.54	0								0	0	0	0.16876	1	4273	4273		0	0	1		+		59746	17804	43567	43915	58228	58228					0.13061628184618712
VPAGHPPF	8	Unmodified	_VPAGHPPF_					0	0	0			REV__ENSG00000183779|ENST00000331569|ZNF703	REV__ENSG00000183779|ENST00000331569|ZNF703	MULTI-SECPEP	A375_MHC_IP_R1	1	820.8162231445312	1	821.43045	820.423173	0.082679	6.7915E-05	-1.4589	-0.0011984	-1.3762	-0.0011304	821.4287315372878	126.89	0.30219	126.89	126.76	127.06	0					8	5	2	0	0	0	0.972	1	48603	48603		11.114	4.7604	1	11957000	+		59747	21778	43568	43916	58229	58229					0.005778788713769245
VPARLPVSQLQ	11	Unmodified	_VPARLPVSQLQ_					0	0	0			REV__ENST00000317122.2_1_1:16160974-16161130:-|nuORF	REV__ENST00000317122.2_1_1:16160974-16161130:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	403.6434631347656	3	403.243429	1206.70846	0.0072407	2.9198E-06	-0.071512	-2.8837E-05	-0.064272	-2.5917E-05	403.57769420951666	32.022	0.40435	32.759	32.504	32.909	0.73691					11	7	2	0	0	0	0.73064	1	11374	11374		8.2864	2.0521	1	4226100	+		59748	23541	43569	43917	58230	58230					0.11337054214141062
VPARLPVSQLQ	11	Unmodified	_VPARLPVSQLQ_					0	0	0			REV__ENST00000317122.2_1_1:16160974-16161130:-|nuORF	REV__ENST00000317122.2_1_1:16160974-16161130:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	403.243429	1206.70846	-0.5301	-0.00021376	0.23856	9.6198E-05	-0.29154	-0.00011756	403.24351878861967	33.095	0.4043	33.095	32.836	33.241	0	0.16824	0.00017079	NaN	8.2864	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2644600	+		59749	23541	43569	43917							0.11337054214141062
VPCRREEAGP	10	Unmodified	_VPCRREEAGP_					0	0	0			REV__ENST00000341744.7_2_20:56227391-56284786:-|nuORF	REV__ENST00000341744.7_2_20:56227391-56284786:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	371.2817687988281	3	371.853835	1112.53968	0.30687	0.00011411	4.3079	0.0016019	4.6148	0.001716	372.1889930050225	40.606	0.30589	41.381	41.234	41.54	0.77451					9	5	2	0	0	0	0.92957	1	15055	15055		3.3196	0	1	916610	+		59750	23735	43570	43918	58231	58231					-0.01209170691026884
VPCSVLFLFP	10	Unmodified	_VPCSVLFLFP_					0	0	0		ENST00000497188.1_1_1:155234069-155238352:-|nuORF	ENST00000497188.1_1_1:155234069-155238352:-|nuORF	ENST00000497188.1_1_1:155234069-155238352:-|nuORF	MSMS	A375_MHC_IP_R1	1	374.59039306640625	3	374.540306	1120.59909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.701	1	21.701	21.201	22.201	0								0	0	0	0.15417	1	5742	5742		3.8763	0.55669	1				59751	12740	43571	43919	58232	58232					0.04361332270445928
VPDCLSIMTY	10	Unmodified	_VPDCLSIMTY_					0	0	0		ENSG00000100139|ENST00000215957|MICALL1	ENSG00000100139|ENST00000215957|MICALL1	ENSG00000100139|ENST00000215957|MICALL1	MULTI-SECPEP	A375_MHC_IP_R1	1	570.66650390625	2	571.267035	1140.51952	-0.015488	-8.8479E-06	0.35844	0.00020477	0.34296	0.00019592	571.2671986029386	108.56	0.96283	108.56	108	108.97	0					36	18	3	0	0	0	0.85226	1	39947	39947		14.838	0	1	7598300			59752	2125	43572	43920	58233	58233					-0.04512102465855605
VPDKKREFW	9	Unmodified	_VPDKKREFW_					0	0	0			REV__ENSG00000110048|ENST00000263847|OSBP	REV__ENSG00000110048|ENST00000263847|OSBP	MULTI-SECPEP	A375_MHC_IP_R2	2	603.2264404296875	2	602.827298	1203.64004	-0.2997	-0.00018066	-1.2377	-0.00074614	-1.5374	-0.0009268	602.8269562111075	100.67	0.51369	101.44	101.19	101.7	0.76278					21	9	3	0	0	0	0.74169	1	38221	38221		11.64	0.81637	1	3127200	+		59753	17610	43573	43921	58234	58234					0.04636809634257588
VPDWGDSI	8	Unmodified	_VPDWGDSI_					0	0	0		ENSG00000172878|ENST00000315796|METAP1D;ENST00000493035.5_1_2:172864861-172928621:+|nuORF;ENST00000488581.5_1_2:172926344-172931024:+|nuORF	ENSG00000172878|ENST00000315796|METAP1D	ENSG00000172878|ENST00000315796|METAP1D	MULTI-SECPEP	A375_MHC_IP_R2	2	888.8086547851562	1	888.409774	887.402498	-0.44116	-0.00039193	-0.6632	-0.00058919	-1.1044	-0.00098112	888.4094639708172	103.98	0.40483	104.75	104.55	104.95	0.76382					12	7	2	0	0	0	0.972	1	39394	39394		2.5775	2.5775	1	2197500			59754	7740	43574	43922	58235	58235					-0.04570756298960532
VPELGQPLRI	10	Unmodified	_VPELGQPLRI_					0	0	0		ENST00000342711.5_1_11:64609330-64611988:-|nuORF	ENST00000342711.5_1_11:64609330-64611988:-|nuORF	ENST00000342711.5_1_11:64609330-64611988:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	374.6386413574219	3	374.560758	1120.66044	0.2245	8.4088E-05	0.1316	4.9293E-05	0.3561	0.00013338	374.56082196670707	39.286	0.15258	40.06	39.965	40.118	0.77451					4	2	2	0	0	0	0.72061	1	14480	14480		3.0723	0.077021	1	538390			59755	10879	43575	43923	58236	58236					0.10493980294063476
VPERWRKFW	9	Unmodified	_VPERWRKFW_					0	0	0			REV__ENST00000478400.3_1_3:93699213-93707534:+|nuORF	REV__ENST00000478400.3_1_3:93699213-93707534:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	651.9353637695312	2	652.356557	1302.69856	-0.924	-0.00060278	1.5583	0.0010165	0.63426	0.00041377	652.3584594548131	123.88	0.30489	123.88	123.69	123.99	0					6	5	2	0	0	0	0.78348	1	46304	46304		1.8442	0	1	11797000	+		59756	15449	43576	43924	58237	58237					0.059319109994021346
VPEYLGPLLF	10	Unmodified	_VPEYLGPLLF_					0	0	0		ENSG00000161905|ENST00000293761|ALOX15;ENST00000573740.1_1_17:4542344-4544955:-|nuORF	ENSG00000161905|ENST00000293761|ALOX15	ENSG00000161905|ENST00000293761|ALOX15	MULTI-SECPEP	A375_MHC_IP_R2	2	574.726318359375	2	574.323525	1146.6325	-0.20056	-0.00011518	3.2777	0.0018825	3.0771	0.0017673	574.3250791174497	98.481	0.86558	99.24	98.589	99.454	0.75977					34	16	3	0	0	0	0.65982	1	37357	37357		26.884	0	1	5309500			59757	6491	43577	43925	58238	58238					0.06504657313985263
VPFKGGPV	8	Unmodified	_VPFKGGPV_					0	0	0			REV__nc|ENSG00000165240|Q04656-5|ATP7A	REV__nc|ENSG00000165240|Q04656-5|ATP7A	MULTI-MSMS	A375_MHC_IP_R1	1	401.1369323730469	2	400.736889	799.459225	-0.23029	-9.2286E-05	0.98899	0.00039632	0.7587	0.00030404	400.73719262542244	96.604	0.71063	96.604	96.376	97.086	0					26	13	3	0	0	0	0.77839	1	35488	35488		0.79363	0	1	3651400	+		59758	20565	43578	43926	58239	58239					0.051473360482418684
VPFLRSPSCQS	11	Unmodified	_VPFLRSPSCQS_					0	0	0		nc|ENSG00000205726|Q15811-5|ITSN1	nc|ENSG00000205726|Q15811-5|ITSN1	nc|ENSG00000205726|Q15811-5|ITSN1	MULTI-SECPEP	A375_MHC_IP_R1	1	407.62689208984375	3	407.541257	1219.60194	0.0031135	1.2689E-06	-0.29786	-0.00012139	-0.29474	-0.00012012	407.5414464313098	35.636	0.61345	35.636	35.319	35.932	0					22	11	3	0	0	0	0.95991	1	11853	11853		4.4062	0	1	1566300			59759	14867	43579	43927	58240	58240					0.000925556573065478
VPFLRSPSCQS	11	Unmodified	_VPFLRSPSCQS_					0	0	0		nc|ENSG00000205726|Q15811-5|ITSN1	nc|ENSG00000205726|Q15811-5|ITSN1	nc|ENSG00000205726|Q15811-5|ITSN1	MULTI-SECPEP	A375_MHC_IP_R2	2	407.6268005371094	3	407.541257	1219.60194	-0.19068	-7.7709E-05	-0.026684	-1.0875E-05	-0.21736	-8.8584E-05	407.5412319866421	34.829	0.80797	35.593	35.223	36.03	0.76338					22	15	2	0	0	0	0.95991	1	12642	12642		10.315	1.0715	1	1583100			59760	14867	43579	43927	58241	58241					0.000925556573065478
VPFMLPLP	8	Unmodified	_VPFMLPLP_					0	0	0			REV__ENST00000313234.9_1_12:52565184-52565452:-|nuORF	REV__ENST00000313234.9_1_12:52565184-52565452:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	457.66455078125	2	457.264425	912.514297	-0.0093697	-4.2844E-06	-0.0056397	-2.5788E-06	-0.015009	-6.8632E-06	457.26432263275507	109.18	6.309	109.18	107.95	114.26	0					351	123	3	0	0	0	0.77781	1	39834	39834		2.8892	2.8892	1	34386000	+		59761	23517	43580	43928	58242	58242					0.05454006524507804
VPFPHLHFF	9	Unmodified	_VPFPHLHFF_					0	0	0		ENST00000405234.1_1_6:39967351-39967723:+|nuORF	ENST00000405234.1_1_6:39967351-39967723:+|nuORF	ENST00000405234.1_1_6:39967351-39967723:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	570.2022094726562	2	570.803094	1139.59164	-0.26656	-0.00015215	4.4408	0.0025348	4.1743	0.0023827	570.8055682867243	55.429	0.25418	55.429	55.33	55.584	0					7	4	2	0	0	0	0.73662	1	19841	19841		2.3027	0	1	609720			59762	11588	43581	43929	58243	58243					0.027423607850323606
VPFQDSRLL	9	Unmodified	_VPFQDSRLL_					0	0	0			REV__ENST00000275732.5_1_7:100286109-100286568:-|nuORF	REV__ENST00000275732.5_1_7:100286109-100286568:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	538.157958984375	2	537.800749	1073.58694	-0.50902	-0.00027375	-2.5855	-0.0013905	-3.0945	-0.0016642	538.3005810643623	71.443	0.35287	71.443	71.262	71.615	0					15	6	4	0	0	0	0.50702	1	26021	26021		19.257	0	1	5151300	+		59763	23301	43582	43930	58244	58244					0.053094318516286876
VPFQDSRLL	9	Unmodified	_VPFQDSRLL_					0	0	0			REV__ENST00000275732.5_1_7:100286109-100286568:-|nuORF	REV__ENST00000275732.5_1_7:100286109-100286568:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	537.800749	1073.58694	-0.86667	-0.0004661	-2.8268	-0.0015202	-3.6935	-0.0019863	537.8006255321632	70.636	0.3539	71.37	71.149	71.503	0.73421	-0.036424	-0.00014195	NaN	19.257	17	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4435500	+		59764	23301	43582	43930							0.053094318516286876
VPFRRRSQF	9	Unmodified	_VPFRRRSQF_					0	0	0			REV__MTMR7|p.R183Q|1|0.46|ENSG00000003987|chr8:17349002-17349002|C/T|missense_variant	REV__MTMR7|p.R183Q|1|0.46|ENSG00000003987|chr8:17349002-17349002|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	398.9629821777344	3	398.228113	1191.66251	-0.40011	-0.00015934	0.29999	0.00011947	-0.10012	-3.9871E-05	398.5627340643439	20.176	1.064	20.786	20.146	21.21	0.61029					58	17	5	0	0	0	0.50892	1	6276	6276		19.362	0.218	1	9911300	+		59765	27045	43583	43931	58245	58245					0.07434453822565956
VPFVPGLLSY	10	Unmodified	_VPFVPGLLSY_					0	0	0		ENST00000312814.10_1_7:112407712-112407748:-|nuORF	ENST00000312814.10_1_7:112407712-112407748:-|nuORF	ENST00000312814.10_1_7:112407712-112407748:-|nuORF	MSMS	A375_MHC_IP_R1	1	546.2922973632812	2	546.310418	1090.60628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.514	1	75.514	75.014	76.014	0								0	0	0	0.15283	1	27512	27512		11.64	1.5664	1				59766	10636	43584	43932	58246	58246					0.06460388142545526
VPFWQKKTF	9	Unmodified	_VPFWQKKTF_					0	0	0		ENSG00000125482|ENST00000334270|TTF1;TTF1|p.P821S|1|0.8|ENSG00000125482|chr9:132379062-132379062|G/A|missense_variant	ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	MULTI-SECPEP	A375_MHC_IP_R1	1	394.6411437988281	3	394.221965	1179.64407	0.043371	1.7098E-05	2.0605	0.00081228	2.1038	0.00082937	394.22285582839606	40.34	0.30602	40.34	40.1	40.406	0					8	5	2	0	0	0	0.78798	1	13839	13839		4.5289	2.2461	1	621400			59767	3967	43585	43933	58247	58247					0.06142899127985402
VPGAAPAQ	8	Unmodified	_VPGAAPAQ_					0	0	0		ENST00000419037.5_1_7:99755529-99756111:-|nuORF	ENST00000419037.5_1_7:99755529-99756111:-|nuORF	ENST00000419037.5_1_7:99755529-99756111:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	709.618896484375	1	710.383165	709.375889	-0.71176	-0.00050562	-1.1406	-0.00081024	-1.8523	-0.0013159	710.3825242238353	126.61	0.45421	126.88	126.65	127.11	0.26593					12	8	2	0	0	0	0.96296	1	49472	49472		10.183	0	1	7229400			59768	11713	43586	43934	58248	58248					0.009575996003718501
VPGCDAGN	8	Unmodified	_VPGCDAGN_					0	0	0		ENST00000587143.5_1_19:37999301-38023364:+|nuORF	ENST00000587143.5_1_19:37999301-38023364:+|nuORF	ENST00000587143.5_1_19:37999301-38023364:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	367.05224609375	2	366.652696	731.290839	0.34415	0.00012618	-1.208	-0.00044291	-0.86383	-0.00031673	366.6523390968789	99.38	0.86395	100.14	99.961	100.83	0.75977					23	16	2	0	0	0	0.77781	1	37735	37735		2.8892	0	1	2087600			59769	13740	43587	43935	58249	58249					-0.08555513927740321
VPGDHFSVGL	10	Unmodified	_VPGDHFSVGL_					0	0	0		ENST00000528528.1_1_8:145748473-145749039:+|nuORF	ENST00000528528.1_1_8:145748473-145749039:+|nuORF	ENST00000528528.1_1_8:145748473-145749039:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	514.6636352539062	2	514.263999	1026.51345	-0.91579	-0.00047096	-0.44226	-0.00022744	-1.3581	-0.0006984	514.263939772538	67.924	0.65653	67.924	67.654	68.31	0					24	12	3	0	0	0	0.30274	1	24634	24634		39.957	0	1	2054900			59770	13118	43588	43936	58250	58250					0.001248834091484241
VPGDHFSVGL	10	Unmodified	_VPGDHFSVGL_					0	0	0		ENST00000528528.1_1_8:145748473-145749039:+|nuORF	ENST00000528528.1_1_8:145748473-145749039:+|nuORF	ENST00000528528.1_1_8:145748473-145749039:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	514.263999	1026.51345	-0.91579	-0.00047096	-0.44226	-0.00022744	-1.3581	-0.0006984	514.263939772538	67.924	0.65653	67.924	67.654	68.31	0	-0.01617	-3.717E-05	NaN	39.957	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2054900			59771	13118	43588	43936							0.001248834091484241
VPGFGGPG	8	Unmodified	_VPGFGGPG_					0	0	0		HOXA13|p.L258F|1|0.31|ENSG00000106031|chr7:27199306-27199306|G/A|missense_variant	HOXA13|p.L258F|1|0.31|ENSG00000106031|chr7:27199306-27199306|G/A|missense_variant	HOXA13|p.L258F|1|0.31|ENSG00000106031|chr7:27199306-27199306|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	687.74609375	1	687.346052	686.338775	-0.52195	-0.00035876	0.62058	0.00042656	0.098632	6.7795E-05	687.3463372477354	73.408	3.8084	73.408	70.135	73.943	0					90	74	2	0	0	0	0.972	1	26756	26756		2.8892	0	1	2590600			59772	14129	43589	43937	58251	58251					-0.016940719453828024
VPGGLLRGV	9	Unmodified	_VPGGLLRGV_					0	0	0		ENST00000477320.1_1_1:31189731-31192090:-|nuORF	ENST00000477320.1_1_1:31189731-31192090:-|nuORF	ENST00000477320.1_1_1:31189731-31192090:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	435.2822265625	2	434.27417	866.533787	-0.33789	-0.00014674	-0.43733	-0.00018992	-0.77521	-0.00033666	434.274267064183	65.171	0.61021	65.909	65.562	66.172	0.73811					38	11	4	0	0	0	0.32899	1	24766	24766		28.487	10.352	1	7597400			59773	12440	43590	43938	58252	58252					0.09518098859609836
VPGHEDRV	8	Unmodified	_VPGHEDRV_					0	0	0		nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB	nc|ENSG00000168477|P22105-1|TNXB	nc|ENSG00000168477|P22105-1|TNXB	MSMS	A375_MHC_IP_R1	1	454.702392578125	2	454.732866	907.451179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.864	1	75.864	75.364	76.364	0								0	0	0	0.16876	1	27644	27644		11.114	0.93107	1				59774	7306	43591	43939	58253	58253					-0.006248429391916943
VPGHLCPACL	10	Unmodified	_VPGHLCPACL_					0	0	0		ENST00000524975.1_1_1:110169591-110169939:+|nuORF	ENST00000524975.1_1_1:110169591-110169939:+|nuORF	ENST00000524975.1_1_1:110169591-110169939:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	505.1666564941406	2	505.251523	1008.48849	-0.27667	-0.00013979	-0.014253	-7.2015E-06	-0.29092	-0.00014699	505.25264767588	81.908	0.25385	81.908	81.707	81.961	0					5	4	2	0	0	0	0.8716	1	29944	29944		7.9102	0.62092	1	410310			59775	13064	43592	43940	58254	58254					-0.015412109894555215
VPGKKKPIVIK	11	Unmodified	_VPGKKKPIVIK_					0	0	0			REV__nc|ENSG00000134779|Q68CL5-1|TPGS2	REV__nc|ENSG00000134779|Q68CL5-1|TPGS2	MULTI-SECPEP	A375_MHC_IP_R1	1	603.1932373046875	2	603.918458	1205.82236	-0.22438	-0.00013551	-0.96522	-0.00058291	-1.1896	-0.00071842	603.9174001571157	88.697	0.40701	88.697	88.612	89.019	0					10	7	2	0	0	0	1.0007	1	32656	32656		0	0	1	4483900	+		59776	18800	43593	43941	58255	58255					0.2276856904700253
VPGLTREQE	9	Unmodified	_VPGLTREQE_					0	0	0			REV__ENST00000393389.7_1_11:82905482-82905638:+|nuORF	REV__ENST00000393389.7_1_11:82905482-82905638:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	514.258056640625	2	514.772188	1027.52982	-0.53909	-0.00027751	-0.80283	-0.00041327	-1.3419	-0.00069078	515.2730586546849	79.867	0.97231	79.867	79.418	80.39	0					25	18	2	0	0	0	0.73363	1	29147	29147		10.824	0	1	2946100	+		59777	24292	43594	43942	58256	58256					0.01715964575214457
VPGPTAVFTSW	11	Unmodified	_VPGPTAVFTSW_					0	0	0		ENST00000245222.8_1_19:49132432-49132576:+|nuORF	ENST00000245222.8_1_19:49132432-49132576:+|nuORF	ENST00000245222.8_1_19:49132432-49132576:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	388.26934814453125	3	387.86948	1160.58661	-0.42001	-0.00016291	1.3554	0.00052573	0.93543	0.00036282	387.8696837960541	37.513	0.92278	38.284	38.07	38.993	0.7709					42	17	3	0	0	0	0.69231	1	13730	13730		9.2438	0.26753	1	12201000			59778	10186	43595	43943	58257	58257					0.012740121317619924
VPGQVAGVV	9	Unmodified	_VPGQVAGVV_					0	0	0			REV__ENSG00000077312|ENST00000243563|SNRPA	REV__ENSG00000077312|ENST00000243563|SNRPA	MULTI-MSMS	A375_MHC_IP_R2	2	825.6788330078125	1	825.482879	824.475603	-0.65678	-0.00054216	0.47858	0.00039506	-0.1782	-0.0001471	825.4832770167109	93.592	0.55818	94.337	94.058	94.616	0.74474					27	10	3	0	0	0	0.060021	1	35662	35662		60.39	2.9182	1	24156000	+		59779	16692	43596	43944	58258	58258					0.05634417214332643
VPGQVAGVV	9	Unmodified	_VPGQVAGVV_					0	0	0			REV__ENSG00000077312|ENST00000243563|SNRPA	REV__ENSG00000077312|ENST00000243563|SNRPA	MULTI-MATCH	A375_MHC_IP_R1	1		1	825.482879	824.475603	-0.49546	-0.00040899	0.30664	0.00025312	-0.18882	-0.00015587	825.4831148571578	94.369	0.61104	94.369	94.09	94.701	0	0.01579	-9.4048E-05	NaN	60.39	30	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19512000	+		59780	16692	43596	43944							0.05634417214332643
VPGQVAGVV	9	Unmodified	_VPGQVAGVV_					0	0	0			REV__ENSG00000077312|ENST00000243563|SNRPA	REV__ENSG00000077312|ENST00000243563|SNRPA	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	825.482879	824.475603	-0.65678	-0.00054216	0.47858	0.00039506	-0.1782	-0.0001471	825.4832770167109	93.592	0.55818	94.337	94.058	94.616	0.74474	-0.01579	4.7887E-05	NaN	60.39	27	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24156000	+		59781	16692	43596	43944							0.05634417214332643
VPGTHGCVTP	10	Unmodified	_VPGTHGCVTP_					0	0	0			REV__nc|ENSG00000110880|Q9ULV4-3|CORO1C;REV__ENST00000453768.6_1_11:67208484-67210099:-|nuORF	REV__nc|ENSG00000110880|Q9ULV4-3|CORO1C	MULTI-SECPEP	A375_MHC_IP_R2	2	967.8626098632812	1	967.466577	966.459301	0.15508	0.00015003	-3.8037	-0.00368	-3.6487	-0.00353	967.4636643913175	94.47	0.55727	95.214	95.02	95.577	0.74474					15	10	2	0	0	0	0.83086	1	35891	35891		21.747	2.3076	1	2836700	+		59782	27171;21164	43597	43945	58259	58259					-0.025270320140862168
VPGVRDTR	8	Unmodified	_VPGVRDTR_					0	0	0			REV__ENST00000542374.5_1_12:133304012-133311999:-|nuORF	REV__ENST00000542374.5_1_12:133304012-133311999:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	450.6564636230469	2	450.256508	898.498464	0.05282	2.3783E-05	-0.0045685	-2.057E-06	0.048252	2.1726E-05	450.2564544766975	109.39	2.6946	109.39	108.26	110.95	0					133	52	3	0	0	0	0.77797	1	39869	39869		2.3027	0	1	13356000	+		59783	25966	43598	43946	58260	58260					0.04515436331791989
VPHHVHVLLAT	11	Unmodified	_VPHHVHVLLAT_					0	0	0		ENSG00000183313|ENST00000332249|OR52L1	ENSG00000183313|ENST00000332249|OR52L1	ENSG00000183313|ENST00000332249|OR52L1	MULTI-SECPEP	A375_MHC_IP_R2	2	612.2555541992188	2	611.85639	1221.69823	-0.32837	-0.00020092	-0.46041	-0.00028171	-0.78879	-0.00048262	611.8557254833747	144.27	0.24301	144.3	144.17	144.42	0.024414					6	4	2	0	0	0	0.99921	1	56379	56379		3.2813	1.9518	1	644050			59784	8484	43599	43947	58261	58261					0.09624491279578251
VPHTGVNRTV	10	Unmodified	_VPHTGVNRTV_					0	0	0		ENSG00000133135|ENST00000255499|RNF128	ENSG00000133135|ENST00000255499|RNF128	ENSG00000133135|ENST00000255499|RNF128	MULTI-SECPEP	A375_MHC_IP_R1	1	359.963134765625	3	360.536724	1078.58834	0.34012	0.00012262	-0.22744	-8.1999E-05	0.11268	4.0625E-05	360.5364646983417	21.118	0.71336	21.118	20.638	21.352	0					20	13	3	0	0	0	0.92389	1	5331	5331		0.69767	0	1	1184300			59785	4492	43600	43948	58262	58262					0.052190659403549944
VPILLVLRKLI	11	Unmodified	_VPILLVLRKLI_					0	0	0			REV__tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1	REV__tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1	MSMS	A375_MHC_IP_R1	1	426.2875671386719	3	426.307481	1275.90061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.775	1	45.775	45.275	46.275	0								0	0	0	0.1636	1	16032	16032		0	0	1		+		59786	28349	43601	43949	58263	58263					0.27370001632266394
VPILLVLRKLI	11	Unmodified	_VPILLVLRKLI_					0	0	0			REV__tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1	REV__tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1	MSMS	A375_MHC_IP_R2	2	426.2876281738281	3	426.307481	1275.90061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.955	1	45.724	45.224	46.224	0.7691								0	0	0	0.16358	1	16795	16795		0.094841	0	1		+		59787	28349	43601	43949	58264	58264					0.27370001632266394
VPINGFSLGV	10	Unmodified	_VPINGFSLGV_					0	0	0			REV__ENST00000502824.1_1_5:31799421-31843499:+|nuORF	REV__ENST00000502824.1_1_5:31799421-31843499:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	501.17803955078125	2	501.784567	1001.55458	-0.58035	-0.00029121	-2.1867	-0.0010972	-2.767	-0.0013885	501.78276494286916	86.331	1.2148	86.331	85.616	86.831	0					34	23	2	0	0	0	0.83355	1	31724	31724		17.113	3.2068	1	2542000	+		59788	18718	43602	43950	58265	58265					0.053866444486288856
VPIPVYVLS	9	Unmodified	_VPIPVYVLS_					0	0	0		UBN1|p.H1054Y|2|0.31|ENSG00000118900|chr16:4877006-4877006|C/T|missense_variant	UBN1|p.H1054Y|2|0.31|ENSG00000118900|chr16:4877006-4877006|C/T|missense_variant	UBN1|p.H1054Y|2|0.31|ENSG00000118900|chr16:4877006-4877006|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	494.33251953125	2	493.799686	985.584819	-0.61066	-0.00030154	-0.20392	-0.0001007	-0.81458	-0.00040224	493.7995286030042	133.28	0.50998	133.28	133	133.51	0					17	9	3	0	0	0	0.63811	1	51445	51445		12.532	0	1	11154000			59789	30107	43603	43951	58266	58266					0.09145003113803796
VPIQQPRNHNR	11	Unmodified	_VPIQQPRNHNR_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	A375_MHC_IP_R2	2	679.3967895507812	2	679.873634	1357.73271	-0.69538	-0.00047277	-1.6931	-0.0011511	-2.3885	-0.0016239	680.3720142060662	106.59	0.254	107.35	107.24	107.5	0.75977					6	4	2	0	0	0	0.99676	1	40308	40308		1.1933	0	1	2281600	+		59790	17289	43604	43952	58267	58267					0.06815707420378203
VPIVPTLWWV	10	Unmodified	_VPIVPTLWWV_					0	0	0			REV__AluSc_dup23857|chr12:55962164-55962478:+|2.035830752585091|0.0102534530081931|7.63|396.0|1|1|sense	REV__AluSc_dup23857|chr12:55962164-55962478:+|2.035830752585091|0.0102534530081931|7.63|396.0|1|1|sense	MSMS	A375_MHC_IP_R2	2	403.9468078613281	3	403.905865	1208.69577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.168	1	24.812	24.312	25.312	0.64368								0	0	0	0.15158	1	7896	7896		8.9762	0	1		+		59791	15367	43605	43953	58268	58268					0.09976642821879977
VPKGHLEG	8	Unmodified	_VPKGHLEG_					0	0	0			REV__ENSG00000160349|ENST00000371781|LCN1	REV__ENSG00000160349|ENST00000371781|LCN1	MULTI-MSMS	A375_MHC_IP_R2	2	837.5172119140625	1	836.462478	835.455202	-0.77212	-0.00064585	0.21756	0.00018198	-0.55456	-0.00046387	836.4626679115557	30.926	0.45461	31.644	31.417	31.872	0.71857					15	8	2	0	0	0	0.77842	1	10890	10890		0.69038	0	1	3114600	+		59792	20165	43606	43954	58269	58269					0.0308924655453211
VPKKPKRKKRR	11	Unmodified	_VPKKPKRKKRR_					0	0	0		ENST00000590548.5_1_19:11597897-11616622:-|nuORF;ENSG00000161914|ENST00000293771|ZNF653	ENST00000590548.5_1_19:11597897-11616622:-|nuORF	ENST00000590548.5_1_19:11597897-11616622:-|nuORF	MSMS	A375_MHC_IP_R1	1	711.0250854492188	2	710.988604	1419.96265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.81	1	112.81	112.31	113.31	0								0	0	0	0.1636	1	41348	41348		0	0	1				59793	6493	43607	43955	58270	58270					0.2694716582395813
VPKKRHKSL	9	Unmodified	_VPKKRHKSL_					0	0	0		ENST00000509041.5_1_4:71841034-71841175:+|nuORF	ENST00000509041.5_1_4:71841034-71841175:+|nuORF	ENST00000509041.5_1_4:71841034-71841175:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	364.92315673828125	3	364.904859	1091.69275	0.1143	4.1707E-05	-0.0034756	-1.2682E-06	0.11082	4.0439E-05	364.9048102837898	33.165	1.1135	33.165	32.585	33.698	0					43	21	3	0	0	0	0.7235	1	10930	10930		4.897	0	1	8916100			59794	12887	43608	43956	58271	58271					0.15056812487750904
VPKLKKLF	8	Unmodified	_VPKLKKLF_					0	0	0		ENSG00000047617|ENST00000682330|ANO2;nc|ENSG00000047617|Q9NQ90-2|ANO2;nc|ENSG00000047617|Q9NQ90|ANO2	ENSG00000047617|ENST00000682330|ANO2	ENSG00000047617|ENST00000682330|ANO2	MULTI-SECPEP	A375_MHC_IP_R2	2	971.867919921875	1	972.66045	971.653173	-0.084164	-8.1863E-05	1.3673	0.0013299	1.2831	0.001248	972.6648487065464	129.52	0.25217	129.76	129.57	129.82	0.23946					5	4	2	0	0	0	0.972	1	50899	50899		0.69038	0	1	2805500			59795	1202	43609	43957	58272	58272					0.16621292484319383
VPKPKIRGG	9	Unmodified	_VPKPKIRGG_					0	0	0			REV__nc|ENSG00000133627|Q9P1U1-2|ACTR3B	REV__nc|ENSG00000133627|Q9P1U1-2|ACTR3B	MULTI-MSMS	A375_MHC_IP_R1	1	476.67681884765625	2	476.308544	950.602535	-0.88029	-0.00041929	0.25524	0.00012157	-0.62505	-0.00029772	476.30850962842464	147.55	0.34648	147.55	147.39	147.74	0					77	33	4	0	0	0	0.77827	1	56406	56406		0	0	1	788260	+		59796	18723	43610	43958	58273	58273					0.1252576315933993
VPKRGGGQ	8	Unmodified	_VPKRGGGQ_					0	0	0			REV__ENST00000534624.5_1_11:122931950-122932924:-|nuORF	REV__ENST00000534624.5_1_11:122931950-122932924:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	798.860107421875	1	798.458062	797.450785	-0.83849	-0.0006695	3.0355	0.0024237	2.197	0.0017542	798.4603445732911	133.97	0.71645	134.13	133.8	134.52	0.16487					16	13	2	0	0	0	0.972	1	52750	52750		2.3027	0	1	29122000	+		59797	25891	43611	43959	58274	58274					0.04395782131632586
VPKRGGGQ	8	Unmodified	_VPKRGGGQ_					0	0	0			REV__ENST00000534624.5_1_11:122931950-122932924:-|nuORF	REV__ENST00000534624.5_1_11:122931950-122932924:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	798.458062	797.450785	-0.69089	-0.00055165	2.4749	0.0019761	1.784	0.0014244	798.459977697359	134.09	0.70978	134.09	133.76	134.47	0	-0.020668	-5.4694E-05	NaN	2.3027	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20972000	+		59798	25891	43611	43959							0.04395782131632586
VPKVTVQVRRS	11	Unmodified	_VPKVTVQVRRS_					0	0	0			REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A	REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-MSMS	A375_MHC_IP_R1	1	423.9975891113281	3	423.598094	1267.77245	-0.36673	-0.00015535	-0.5266	-0.00022307	-0.89334	-0.00037842	423.5976109599599	136.13	0.87372	136.13	135.84	136.72	0					44	16	4	0	0	0	0.73886	1	52441	52441		0.45452	0.046251	1	12885000	+		59799	18991	43612	43960	58275	58275					0.1492783437106482
VPKVTVQVRRS	11	Unmodified	_VPKVTVQVRRS_					0	0	0			REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A	REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	423.598094	1267.77245	-0.36673	-0.00015535	-0.5266	-0.00022307	-0.89334	-0.00037842	423.5976109599599	136.13	0.87372	136.13	135.84	136.72	0	-0.023205	9.6198E-05	NaN	0.45452	44	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12885000	+		59800	18991	43612	43960							0.1492783437106482
VPKVTVQVRRS	11	Unmodified	_VPKVTVQVRRS_					0	0	0			REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A	REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	423.598094	1267.77245	0.0062948	2.6665E-06	-0.69799	-0.00029567	-0.6917	-0.000293	423.59750475620893	136.06	1.3321	136.17	135.58	136.92	0.11134	0.023205	-0.00012161	NaN	0.45452	48	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11799000	+		59801	18991	43612	43960							0.1492783437106482
VPLDEDPQV	9	Unmodified	_VPLDEDPQV_					0	0	0		ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	MSMS	A375_MHC_IP_R2	2	506.1970520019531	2	506.253297	1010.49204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.28	1	105.05	104.55	105.55	0.76308								0	0	0	0.1521	1	39461	39461		18.135	3.2967	1				59802	3528	43613	43961	58276	58276					-0.012785464102307742
VPLDRRLIKK	10	Unmodified	_VPLDRRLIKK_					0	0	0			REV__CAPZA3|p.R253K|1|0.26|ENSG00000177938|chr12:18739026-18739026|G/A|missense_variant	REV__CAPZA3|p.R253K|1|0.26|ENSG00000177938|chr12:18739026-18739026|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	413.3036193847656	3	413.274952	1236.80303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.639	1	45.639	45.139	46.139	0								0	0	0	0.15531	1	15980	15980		1.7423	0	1		+		59803	15574	43614	43962	58277	58277					0.19409612756112438
VPLFKEFRI	9	Unmodified	_VPLFKEFRI_					0	0	0			REV__ENST00000497591.5_1_1:245222739-245254330:+|nuORF	REV__ENST00000497591.5_1_1:245222739-245254330:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	383.3047180175781	3	383.565732	1147.67537	0.083037	3.185E-05	-0.48591	-0.00018638	-0.40287	-0.00015453	383.9000653339827	47.183	0.4082	47.945	47.715	48.123	0.76127					12	7	2	0	0	0	0.7713	1	17730	17730		8.4443	0.49891	1	962690	+		59804	22463	43615	43963	58278	58278					0.107434721620848
VPLKIPLQR	9	Unmodified	_VPLKIPLQR_					0	0	0		ENSG00000125871|ENST00000377710|MGME1;ENST00000467391.1_1_20:17950715-17968822:+|nuORF	ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	MULTI-SECPEP	A375_MHC_IP_R1	1	355.4598388671875	3	355.237726	1062.69135	0.1497	5.3181E-05	-0.035999	-1.2788E-05	0.11371	4.0393E-05	355.237682517742	45.763	0.30431	45.763	45.636	45.941	0					8	5	2	0	0	0	0.81858	1	16055	16055		0	0	1	967880			59805	4003	43616	43964	58279	58279					0.16251178398988486
VPLLILKLP	9	Unmodified	_VPLLILKLP_					0	0	0			REV__nc|ENSG00000160593|Q86YT9-3|JAML	REV__nc|ENSG00000160593|Q86YT9-3|JAML	MSMS	A375_MHC_IP_R1	1	503.3961486816406	2	503.357171	1004.69979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.6	1	144.6	144.1	145.1	0								0	0	0	0.15486	1	55450	55450		0	0	1		+		59806	20177	43617	43965	58280	58280					0.1976273231559844
VPLLIRIA	8	Unmodified	_VPLLIRIA_					0	0	0		SLC9C2|p.I726L|1|0.36|ENSG00000162753|chr1:173530042-173530042|T/A|missense_variant	SLC9C2|p.I726L|1|0.36|ENSG00000162753|chr1:173530042-173530042|T/A|missense_variant	SLC9C2|p.I726L|1|0.36|ENSG00000162753|chr1:173530042-173530042|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	895.3675537109375	1	894.6135	893.606223	-0.46356	-0.0004147	-4.2114	-0.0037676	-4.675	-0.0041823	894.6107139618955	130.52	0.30424	130.74	130.5	130.81	0.21419					8	5	2	0	0	0	0.972	1	51236	51236		0	0	1	5848900			59807	29198	43618	43966	58281	58281					0.1551643293315692
VPLLQQQVKDT	11	Unmodified	_VPLLQQQVKDT_					0	0	0		HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant;HTT|p.S2672Rfs*25|1|0.31|ENSG00000197386|chr4:3228913-3228913|T/-|frameshift_variant;ENSG00000197386|ENST00000355072|HTT;ENST00000506137.1_1_4:3117057-3123221:+|nuORF	HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant	HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	423.9778747558594	3	423.578477	1267.7136	-0.55389	-0.00023462	-0.18759	-7.946E-05	-0.74148	-0.00031408	423.5783397734537	24.796	0.4574	25.439	25.364	25.822	0.64368					15	8	2	0	0	0	0.72651	1	8237	8237		12.228	0	1	4973300			59808	9151	43619	43967	58282	58282					0.09045313286083001
VPLLQQQVKDT	11	Unmodified	_VPLLQQQVKDT_					0	0	0		HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant;HTT|p.S2672Rfs*25|1|0.31|ENSG00000197386|chr4:3228913-3228913|T/-|frameshift_variant;ENSG00000197386|ENST00000355072|HTT;ENST00000506137.1_1_4:3117057-3123221:+|nuORF	HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant	HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	423.578477	1267.7136	-0.15741	-6.6674E-05	0.010324	4.3729E-06	-0.14708	-6.2301E-05	423.57845722395393	25.518	0.45877	25.518	25.357	25.816	0	0.039547	0.00011751	NaN	12.228	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4977600			59809	9151	43619	43967							0.09045313286083001
VPLLQQQVKDT	11	Unmodified	_VPLLQQQVKDT_					0	0	0		HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant;HTT|p.S2672Rfs*25|1|0.31|ENSG00000197386|chr4:3228913-3228913|T/-|frameshift_variant;ENSG00000197386|ENST00000355072|HTT;ENST00000506137.1_1_4:3117057-3123221:+|nuORF	HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant	HTT|p.E2170Rfs*2|1|0.47|ENSG00000197386|chr4:3212021-3212021|T/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	423.578477	1267.7136	-0.55389	-0.00023462	-0.18759	-7.946E-05	-0.74148	-0.00031408	423.5783397734537	24.796	0.4574	25.439	25.364	25.822	0.64368	-0.039547	-0.00013399	NaN	12.228	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4973300			59810	9151	43619	43967							0.09045313286083001
VPLLVKVIKC	10	Unmodified	_VPLLVKVIKC_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MSMS	A375_MHC_IP_R1	1	371.3531494140625	3	371.247234	1110.71987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.043	1	16.043	15.543	16.543	0								0	0	0	0.15642	1	3713	3713		0	0	1				59811	4852	43620	43968	58283	58283					0.16894159983917234
VPLQMLYDV	9	Unmodified	_VPLQMLYDV_					0	0	0			REV__nc|ENSG00000058056|Q92995-2|USP13	REV__nc|ENSG00000058056|Q92995-2|USP13	MULTI-MSMS	A375_MHC_IP_R2	2	539.6868286132812	2	539.286085	1076.55762	-0.82652	-0.00044573	1.0969	0.00059152	0.27033	0.00014579	539.2865298764891	103.51	0.96587	104.28	103.79	104.75	0.76428					38	18	3	0	0	0	0.32899	1	39163	39163		28.487	0	1	7401900	+		59812	16429	43621	43969	58284	58284					0.022401515111141634
VPMKERPV	8	Unmodified	_VPMKERPV_					0	0	0		ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	MULTI-SECPEP	A375_MHC_IP_R2	2	477.65582275390625	2	478.273312	954.532072	-0.71436	-0.00034166	0.15115	7.229E-05	-0.56321	-0.00026937	478.2734791063073	37.785	0.30553	38.559	38.382	38.687	0.77451					8	5	2	0	0	0	0.972	1	13790	13790		7.9102	0	1	1002700			59813	5151	43622	43970	58285	58285					0.052987217793543095
VPMSKPQEA	9	Unmodified	_VPMSKPQEA_					0	0	0			REV__nc|ENSG00000143970|Q76L83-2|ASXL2	REV__nc|ENSG00000143970|Q76L83-2|ASXL2	MULTI-SECPEP	A375_MHC_IP_R1	1	494.16650390625	2	493.75241	985.490267	-0.3432	-0.00016945	-0.21471	-0.00010601	-0.55791	-0.00027547	493.7523750914095	37.182	0.75899	37.182	36.695	37.454	0					19	14	2	0	0	0	0.73008	1	12355	12355		12.241	2.8932	1	1506500	+		59814	19400	43623	43971	58286	58286					-0.0030587869983946803
VPMSKPQEA	9	Unmodified	_VPMSKPQEA_					0	0	0			REV__nc|ENSG00000143970|Q76L83-2|ASXL2	REV__nc|ENSG00000143970|Q76L83-2|ASXL2	MULTI-MATCH	A375_MHC_IP_R2	2		2	493.75241	985.490267	-0.76301	-0.00037674	-0.015458	-7.6326E-06	-0.77847	-0.00038437	493.7524364671496	36.342	0.66299	37.113	36.85	37.513	0.7709	-0.034435	9.6904E-05	NaN	12.241	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1502700	+		59815	19400	43623	43971							-0.0030587869983946803
VPMTFHRML	9	Unmodified	_VPMTFHRML_					0	0	0			REV__ENST00000248975.5_1_22:32352863-32353058:+|nuORF	REV__ENST00000248975.5_1_22:32352863-32353058:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	565.6834106445312	2	566.293722	1130.57289	-0.56208	-0.0003183	-0.75775	-0.00042911	-1.3198	-0.00074741	566.795040634203	84.292	0.4528	84.292	83.989	84.442	0					14	8	2	0	0	0	0.71541	1	30848	30848		7.2892	0	1	1585100	+		59816	23118	43624	43972	58287	58287					0.012827398273202562
VPNAVGVY	8	Unmodified	_VPNAVGVY_					0	0	0			REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	MULTI-SECPEP	A375_MHC_IP_R1	1	410.30682373046875	2	409.723978	817.433404	-0.16834	-6.8972E-05	0.059104	2.4216E-05	-0.10923	-4.4756E-05	409.72422000729523	36.902	0.4535	36.902	36.745	37.198	0					15	8	2	0	0	0	0.93416	1	12396	12396		9.3474	9.3474	1	3356000	+		59817	16829	43625	43973	58288	58288					0.017384418059464224
VPPAALSL	8	Unmodified	_VPPAALSL_					0	0	0			REV__ENST00000366787.7_1_6:169617807-169617909:-|nuORF	REV__ENST00000366787.7_1_6:169617807-169617909:-|nuORF	MSMS	A375_MHC_IP_R2	2	384.28369140625	2	384.236722	766.45889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.23	1	23.86	23.36	24.36	0.63014								0	0	0	0.16876	1	7439	7439		6.3541	0	1		+		59818	23938	43626	43974	58289	58289					0.06631916328376519
VPPALRDG	8	Unmodified	_VPPALRDG_					0	0	0		ENST00000398540.7_1_3:69230777-69230840:-|nuORF	ENST00000398540.7_1_3:69230777-69230840:-|nuORF	ENST00000398540.7_1_3:69230777-69230840:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	412.6302795410156	2	412.734877	823.455202	0.0003719	1.535E-07	-1.4279	-0.00058935	-1.4275	-0.0005892	412.73190447727916	106.03	2.3913	106.79	105.97	108.36	0.75977					83	46	3	0	0	0	0.77797	1	40203	40203		2.3027	0	1	3269600			59819	11521	43627	43975	58290	58290					0.03641246554514055
VPPKRKVVR	9	Unmodified	_VPPKRKVVR_					0	0	0			REV__ENSG00000168476|ENST00000306306|REEP4	REV__ENSG00000168476|ENST00000306306|REEP4	MSMS	A375_MHC_IP_R1	1	360.26092529296875	3	360.245104	1077.71348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.44	1	32.44	31.94	32.94	0								0	0	0	0.15486	1	10482	10482		0.86438	0.16671	1		+		59820	20857	43628	43976	58291	58291					0.17773402867419463
VPPKVCPFRS	10	Unmodified	_VPPKVCPFRS_					0	0	0		ENST00000541990.5_1_1:155170782-155174851:-|nuORF	ENST00000541990.5_1_1:155170782-155174851:-|nuORF	ENST00000541990.5_1_1:155170782-155174851:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	377.4423828125	3	377.211071	1128.61138	0.16003	6.0366E-05	-0.74225	-0.00027999	-0.58222	-0.00021962	377.5444230723986	39.985	0.45716	39.985	39.694	40.151	0					11	8	2	0	0	0	0.9269	1	13676	13676		1.7423	0	1	2059800			59821	13293	43629	43977	58292	58292					0.052223687334844726
VPPMGTLF	8	Unmodified	_VPPMGTLF_					0	0	0		ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	MSMS	A375_MHC_IP_R1	1	431.2877197265625	2	431.230582	860.446611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.612	1	20.612	20.112	21.112	0								0	0	0	0.16876	1	5318	5318		5.7604	0.52976	1				59822	1112	43630	43978	58293	58293					0.01080556593694837
VPPMVGGP	8	Unmodified	_VPPMVGGP_					0	0	0		nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	MULTI-SECPEP	A375_MHC_IP_R2	2	377.1004333496094	2	377.201825	752.389096	-0.10664	-4.0225E-05	0.31071	0.0001172	0.20407	7.6976E-05	377.20200127724274	38.146	0.46059	38.921	38.739	39.2	0.77451					10	8	2	0	0	0	0.972	1	14049	14049		2.8892	0	1	1213600			59823	4034	43631	43979	58294	58294					0.002997143881316333
VPPNLRKLDP	10	Unmodified	_VPPNLRKLDP_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MSMS	A375_MHC_IP_R2	2	383.5924987792969	3	383.564391	1147.67134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.965	1	34.717	34.217	35.217	0.75225								0	0	0	0.15267	1	12209	12209		12.175	1.2758	1				59824	5414	43632	43980	58295	58295					0.1034138266836635
VPPPGGALV	9	Unmodified	_VPPPGGALV_					0	0	0			REV__ENST00000372733.3_1_20:43955353-43955551:-|nuORF	REV__ENST00000372733.3_1_20:43955353-43955551:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	806.7982788085938	1	806.477066	805.469789	-0.88869	-0.00071671	0.38883	0.00031358	-0.49987	-0.00040313	806.4773139207609	76.79	0.80962	77.531	77.25	78.06	0.7407					37	15	3	0	0	0	0.22067	1	29263	29263		36.466	0	1	18785000	+		59825	24073	43633	43981	58296	58296					0.05927318702663342
VPPPGGALV	9	Unmodified	_VPPPGGALV_					0	0	0			REV__ENST00000372733.3_1_20:43955353-43955551:-|nuORF	REV__ENST00000372733.3_1_20:43955353-43955551:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	806.477066	805.469789	-0.37994	-0.00030641	-0.25134	-0.0002027	-0.63128	-0.00050911	806.4767795739588	77.665	0.86413	77.665	77.235	78.099	0	0.06703	-0.00020115	NaN	36.466	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19523000	+		59826	24073	43633	43981							0.05927318702663342
VPPPGGALV	9	Unmodified	_VPPPGGALV_					0	0	0			REV__ENST00000372733.3_1_20:43955353-43955551:-|nuORF	REV__ENST00000372733.3_1_20:43955353-43955551:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	806.477066	805.469789	-0.88869	-0.00071671	0.38883	0.00031358	-0.49987	-0.00040313	806.4773139207609	76.79	0.80962	77.531	77.25	78.06	0.7407	-0.06703	0.00031513	NaN	36.466	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18785000	+		59827	24073	43633	43981							0.05927318702663342
VPPPPPPPP	9	Unmodified	_VPPPPPPPP_					0	0	0		ENSG00000173166|ENST00000319170|RAPH1;ENSG00000005483|ENST00000311117|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000154380|Q8N8S7|ENAH;ENSG00000154380|ENST00000366843|ENAH;nc|ENSG00000154380|Q8N8S7-3|ENAH;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;ENSG00000135250|ENST00000393651|SRPK2;nc|ENSG00000135250|P78362|SRPK2;ENST00000467731.1_1_21:33057290-33073360:-|nuORF;nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;ENSG00000156304|ENST00000286835|SCAF4;ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1;nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1;nc|ENSG00000187164|A0MZ66-2|SHTN1;ENSG00000188316|ENST00000341276|ENO4;ENST00000494373.1_1_2:54014190-54014463:+|nuORF	ENSG00000173166|ENST00000319170|RAPH1;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;ENSG00000135250|ENST00000393651|SRPK2;ENST00000467731.1_1_21:33057290-33073360:-|nuORF;ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000187164|A0MZ66-8|SHTN1;ENSG00000188316|ENST00000341276|ENO4;ENST00000494373.1_1_2:54014190-54014463:+|nuORF;REV__nc|ENSG00000130396|P55196-1|AFDN;REV__ENSG00000132970|ENST00000335327|WASF3;REV__nc|ENSG00000136754|Q8IZP0-11|ABI1;REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B;REV__ENST00000573523.5_1_17:4574736-4578861:-|nuORF;REV__ENSG00000145414|ENST00000274054|NAF1;REV__nc|ENSG00000162458|Q8WUP2-2|FBLIM1	ENSG00000173166|ENST00000319170|RAPH1	MULTI-MSMS	A375_MHC_IP_R1	1	447.68194580078125	2	447.757821	893.501089	0.067538	3.0241E-05	-0.1162	-5.2028E-05	-0.04866	-2.1788E-05	447.75766415790923	45.795	3.6031	45.795	44.216	47.819	0					120	70	2	0	0	0	0.042019	2	15982	15982;16179		67.413	0	1	3333600			59828	7773;18537;5107;8619;19174;19472;4660;8809;19269;6187;8901;12690;18697;18956;20257	43634	43982	58297;58298	58297					0.05007891736750025
VPPPPPPPP	9	Unmodified	_VPPPPPPPP_					0	0	0		ENSG00000173166|ENST00000319170|RAPH1;ENSG00000005483|ENST00000311117|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000154380|Q8N8S7|ENAH;ENSG00000154380|ENST00000366843|ENAH;nc|ENSG00000154380|Q8N8S7-3|ENAH;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;ENSG00000135250|ENST00000393651|SRPK2;nc|ENSG00000135250|P78362|SRPK2;ENST00000467731.1_1_21:33057290-33073360:-|nuORF;nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;ENSG00000156304|ENST00000286835|SCAF4;ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1;nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1;nc|ENSG00000187164|A0MZ66-2|SHTN1;ENSG00000188316|ENST00000341276|ENO4;ENST00000494373.1_1_2:54014190-54014463:+|nuORF	ENSG00000173166|ENST00000319170|RAPH1;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;ENSG00000135250|ENST00000393651|SRPK2;ENST00000467731.1_1_21:33057290-33073360:-|nuORF;ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000187164|A0MZ66-8|SHTN1;ENSG00000188316|ENST00000341276|ENO4;ENST00000494373.1_1_2:54014190-54014463:+|nuORF;REV__nc|ENSG00000130396|P55196-1|AFDN;REV__ENSG00000132970|ENST00000335327|WASF3;REV__nc|ENSG00000136754|Q8IZP0-11|ABI1;REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B;REV__ENST00000573523.5_1_17:4574736-4578861:-|nuORF;REV__ENSG00000145414|ENST00000274054|NAF1;REV__nc|ENSG00000162458|Q8WUP2-2|FBLIM1	ENSG00000173166|ENST00000319170|RAPH1	MULTI-MSMS	A375_MHC_IP_R1	1	448.19189453125	2	447.757821	893.501089	0.010478	4.6914E-06	-3.8383	-0.0017186	-3.8278	-0.0017139	447.7577152691449	51.356	1.4215	51.356	50.663	52.085	0					37	27	2	0	0	0	0.33325	1	18176	18176		28.173	0	1	1128500			59829	7773;18537;5107;8619;19174;19472;4660;8809;19269;6187;8901;12690;18697;18956;20257	43634	43982	58299	58299					0.05007891736750025
VPPPPPPPP	9	Unmodified	_VPPPPPPPP_					0	0	0		ENSG00000173166|ENST00000319170|RAPH1;ENSG00000005483|ENST00000311117|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000154380|Q8N8S7|ENAH;ENSG00000154380|ENST00000366843|ENAH;nc|ENSG00000154380|Q8N8S7-3|ENAH;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;ENSG00000135250|ENST00000393651|SRPK2;nc|ENSG00000135250|P78362|SRPK2;ENST00000467731.1_1_21:33057290-33073360:-|nuORF;nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;ENSG00000156304|ENST00000286835|SCAF4;ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1;nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1;nc|ENSG00000187164|A0MZ66-2|SHTN1;ENSG00000188316|ENST00000341276|ENO4;ENST00000494373.1_1_2:54014190-54014463:+|nuORF	ENSG00000173166|ENST00000319170|RAPH1;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;ENSG00000135250|ENST00000393651|SRPK2;ENST00000467731.1_1_21:33057290-33073360:-|nuORF;ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000187164|A0MZ66-8|SHTN1;ENSG00000188316|ENST00000341276|ENO4;ENST00000494373.1_1_2:54014190-54014463:+|nuORF;REV__nc|ENSG00000130396|P55196-1|AFDN;REV__ENSG00000132970|ENST00000335327|WASF3;REV__nc|ENSG00000136754|Q8IZP0-11|ABI1;REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B;REV__ENST00000573523.5_1_17:4574736-4578861:-|nuORF;REV__ENSG00000145414|ENST00000274054|NAF1;REV__nc|ENSG00000162458|Q8WUP2-2|FBLIM1	ENSG00000173166|ENST00000319170|RAPH1	MSMS	A375_MHC_IP_R1	1	447.6580505371094	2	447.757821	893.501089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.796	1	48.796	48.296	49.296	0								0	0	0	0.14459	1	17233	17233		28.173	0	1				59830	7773;18537;5107;8619;19174;19472;4660;8809;19269;6187;8901;12690;18697;18956;20257	43634	43982	58300	58300					0.05007891736750025
VPPPPPPPP	9	Unmodified	_VPPPPPPPP_					0	0	0		ENSG00000173166|ENST00000319170|RAPH1;ENSG00000005483|ENST00000311117|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000154380|Q8N8S7|ENAH;ENSG00000154380|ENST00000366843|ENAH;nc|ENSG00000154380|Q8N8S7-3|ENAH;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;ENSG00000135250|ENST00000393651|SRPK2;nc|ENSG00000135250|P78362|SRPK2;ENST00000467731.1_1_21:33057290-33073360:-|nuORF;nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;ENSG00000156304|ENST00000286835|SCAF4;ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1;nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1;nc|ENSG00000187164|A0MZ66-2|SHTN1;ENSG00000188316|ENST00000341276|ENO4;ENST00000494373.1_1_2:54014190-54014463:+|nuORF	ENSG00000173166|ENST00000319170|RAPH1;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;ENSG00000135250|ENST00000393651|SRPK2;ENST00000467731.1_1_21:33057290-33073360:-|nuORF;ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000187164|A0MZ66-8|SHTN1;ENSG00000188316|ENST00000341276|ENO4;ENST00000494373.1_1_2:54014190-54014463:+|nuORF;REV__nc|ENSG00000130396|P55196-1|AFDN;REV__ENSG00000132970|ENST00000335327|WASF3;REV__nc|ENSG00000136754|Q8IZP0-11|ABI1;REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B;REV__ENST00000573523.5_1_17:4574736-4578861:-|nuORF;REV__ENSG00000145414|ENST00000274054|NAF1;REV__nc|ENSG00000162458|Q8WUP2-2|FBLIM1	ENSG00000173166|ENST00000319170|RAPH1	MSMS	A375_MHC_IP_R1	1	447.6822509765625	2	447.757821	893.501089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.863	1	53.863	53.363	54.363	0								0	0	0	0.15486	1	19212	19212		9.3474	0	1				59831	7773;18537;5107;8619;19174;19472;4660;8809;19269;6187;8901;12690;18697;18956;20257	43634	43982	58301	58301					0.05007891736750025
VPPPPPPPP	9	Unmodified	_VPPPPPPPP_					0	0	0		ENSG00000173166|ENST00000319170|RAPH1;ENSG00000005483|ENST00000311117|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000154380|Q8N8S7|ENAH;ENSG00000154380|ENST00000366843|ENAH;nc|ENSG00000154380|Q8N8S7-3|ENAH;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;ENSG00000135250|ENST00000393651|SRPK2;nc|ENSG00000135250|P78362|SRPK2;ENST00000467731.1_1_21:33057290-33073360:-|nuORF;nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;ENSG00000156304|ENST00000286835|SCAF4;ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1;nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1;nc|ENSG00000187164|A0MZ66-2|SHTN1;ENSG00000188316|ENST00000341276|ENO4;ENST00000494373.1_1_2:54014190-54014463:+|nuORF	ENSG00000173166|ENST00000319170|RAPH1;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;ENSG00000135250|ENST00000393651|SRPK2;ENST00000467731.1_1_21:33057290-33073360:-|nuORF;ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000187164|A0MZ66-8|SHTN1;ENSG00000188316|ENST00000341276|ENO4;ENST00000494373.1_1_2:54014190-54014463:+|nuORF;REV__nc|ENSG00000130396|P55196-1|AFDN;REV__ENSG00000132970|ENST00000335327|WASF3;REV__nc|ENSG00000136754|Q8IZP0-11|ABI1;REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B;REV__ENST00000573523.5_1_17:4574736-4578861:-|nuORF;REV__ENSG00000145414|ENST00000274054|NAF1;REV__nc|ENSG00000162458|Q8WUP2-2|FBLIM1	ENSG00000173166|ENST00000319170|RAPH1	MSMS	A375_MHC_IP_R1	1	447.61737060546875	2	447.757821	893.501089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.185	1	54.185	53.685	54.685	0								0	0	0	0.15486	1	19335	19335		9.3474	0	1				59832	7773;18537;5107;8619;19174;19472;4660;8809;19269;6187;8901;12690;18697;18956;20257	43634	43982	58302	58302					0.05007891736750025
VPPPPPPPP	9	Unmodified	_VPPPPPPPP_					0	0	0		ENSG00000173166|ENST00000319170|RAPH1;ENSG00000005483|ENST00000311117|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000154380|Q8N8S7|ENAH;ENSG00000154380|ENST00000366843|ENAH;nc|ENSG00000154380|Q8N8S7-3|ENAH;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;ENSG00000135250|ENST00000393651|SRPK2;nc|ENSG00000135250|P78362|SRPK2;ENST00000467731.1_1_21:33057290-33073360:-|nuORF;nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;ENSG00000156304|ENST00000286835|SCAF4;ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1;nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1;nc|ENSG00000187164|A0MZ66-2|SHTN1;ENSG00000188316|ENST00000341276|ENO4;ENST00000494373.1_1_2:54014190-54014463:+|nuORF	ENSG00000173166|ENST00000319170|RAPH1;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;ENSG00000135250|ENST00000393651|SRPK2;ENST00000467731.1_1_21:33057290-33073360:-|nuORF;ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000187164|A0MZ66-8|SHTN1;ENSG00000188316|ENST00000341276|ENO4;ENST00000494373.1_1_2:54014190-54014463:+|nuORF;REV__nc|ENSG00000130396|P55196-1|AFDN;REV__ENSG00000132970|ENST00000335327|WASF3;REV__nc|ENSG00000136754|Q8IZP0-11|ABI1;REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B;REV__ENST00000573523.5_1_17:4574736-4578861:-|nuORF;REV__ENSG00000145414|ENST00000274054|NAF1;REV__nc|ENSG00000162458|Q8WUP2-2|FBLIM1	ENSG00000173166|ENST00000319170|RAPH1	MULTI-MSMS	A375_MHC_IP_R2	2	447.68182373046875	2	447.757821	893.501089	-0.33602	-0.00015046	-0.063881	-2.8603E-05	-0.3999	-0.00017906	447.757718108161	44.807	3.495	45.576	44.228	47.723	0.76909					102	68	2	0	0	0	0.042019	1	16685	16685		67.413	0	1	3002300			59833	7773;18537;5107;8619;19174;19472;4660;8809;19269;6187;8901;12690;18697;18956;20257	43634	43982	58303	58303					0.05007891736750025
VPPPPQSV	8	Unmodified	_VPPPPQSV_					0	0	0		nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1;nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1;nc|ENSG00000160691|P29353-5|SHC1	nc|ENSG00000160691|P29353-3|SHC1	nc|ENSG00000160691|P29353-3|SHC1	MULTI-MSMS	A375_MHC_IP_R1	1	411.1318054199219	2	410.731803	819.449054	-0.045523	-1.8698E-05	0.30274	0.00012434	0.25721	0.00010565	410.7318603600323	37.938	2.1901	37.938	37.301	39.491	0					69	42	2	0	0	0	0.16381	2	12975	12716;12975		81.613	24.142	1	4803600			59834	6433	43635	43983	58304;58305	58305					0.03210728323006151
VPPPPQSV	8	Unmodified	_VPPPPQSV_					0	0	0		nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1;nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1;nc|ENSG00000160691|P29353-5|SHC1	nc|ENSG00000160691|P29353-3|SHC1	nc|ENSG00000160691|P29353-3|SHC1	MULTI-MSMS	A375_MHC_IP_R2	2	411.1317443847656	2	410.731803	819.449054	-0.42698	-0.00017537	0.24496	0.00010061	-0.18202	-7.4762E-05	410.731851515054	37.239	1.7863	38.01	37.359	39.145	0.7709					59	34	2	0	0	0	0.11177	2	13750	13504;13750		92.822	14.838	1	3744700			59835	6433	43635	43983	58306;58307	58307					0.03210728323006151
VPPPSRSR	8	Unmodified	_VPPPSRSR_					0	0	0			REV__nc|ENSG00000161547|Q01130-2|SRSF2	REV__nc|ENSG00000161547|Q01130-2|SRSF2	MULTI-SECPEP	A375_MHC_IP_R2	2	448.1573791503906	2	448.259051	894.503549	-0.17619	-7.8977E-05	0.81205	0.00036401	0.63586	0.00028503	448.259288795637	46.58	0.45842	47.345	47.159	47.617	0.76518					11	8	2	0	0	0	0.972	1	17463	17463		2.8892	0	1	798610	+		59836	20212	43636	43984	58308	58308					0.05207740194430244
VPPPSVSLPKL	11	Unmodified	_VPPPSVSLPKL_					0	0	0		ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENST00000565246.6_2_16:70277537-70279514:-|nuORF;ENST00000523028.5_1_16:21912870-21927266:-|nuORF;ENST00000522841.6_1_16:21481075-21531198:-|nuORF	ENSG00000157106|ENST00000446231|SMG1;ENST00000522841.6_1_16:21481075-21531198:-|nuORF	ENSG00000157106|ENST00000446231|SMG1	MULTI-SECPEP	A375_MHC_IP_R2	2	378.2730407714844	3	378.569142	1132.6856	-0.14211	-5.3797E-05	0.87217	0.00033018	0.73007	0.00027638	378.56946338859825	40.966	0.30499	41.741	41.641	41.946	0.77451					8	5	2	0	0	0	0.99331	1	15231	15231		2.4348	0	1	1305800			59837	6228;13031	43637	43985	58309	58309					0.12456035096647611
VPPRWSVRI	9	Unmodified	_VPPRWSVRI_					0	0	0			REV__ENSG00000060709|ENST00000690449|RIMBP2	REV__ENSG00000060709|ENST00000690449|RIMBP2	MULTI-MSMS	A375_MHC_IP_R1	1	370.9404296875	3	370.557459	1108.65055	0.28831	0.00010683	0.50979	0.00018891	0.7981	0.00029574	370.8920002803665	38.577	0.35986	38.577	38.319	38.679	0					9	6	2	0	0	0	0.65748	1	13055	13055		10.8	2.644	1	2189400	+		59838	16445	43638	43986	58310	58310					0.10056837079355319
VPPRWSVRI	9	Unmodified	_VPPRWSVRI_					0	0	0			REV__ENSG00000060709|ENST00000690449|RIMBP2	REV__ENSG00000060709|ENST00000690449|RIMBP2	MULTI-MSMS	A375_MHC_IP_R2	2	370.9403381347656	3	370.557459	1108.65055	-0.038505	-1.4268E-05	-0.14215	-5.2673E-05	-0.18065	-6.6941E-05	370.5574832440784	37.426	0.30677	38.197	38.02	38.327	0.7709					9	5	2	0	0	0	0.65748	1	13741	13741		10.8	3.6978	1	2991500	+		59839	16445	43638	43986	58311	58311					0.10056837079355319
VPPRWSVRI	9	Unmodified	_VPPRWSVRI_					0	0	0			REV__ENSG00000060709|ENST00000690449|RIMBP2	REV__ENSG00000060709|ENST00000690449|RIMBP2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	370.557459	1108.65055	0.28831	0.00010683	0.50979	0.00018891	0.7981	0.00029574	370.8920002803665	38.577	0.35986	38.577	38.319	38.679	0	0.19008	0.00031818	NaN	10.8	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2189400	+		59840	16445	43638	43986							0.10056837079355319
VPPRWSVRI	9	Unmodified	_VPPRWSVRI_					0	0	0			REV__ENSG00000060709|ENST00000690449|RIMBP2	REV__ENSG00000060709|ENST00000690449|RIMBP2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	370.557459	1108.65055	-0.038505	-1.4268E-05	-0.14215	-5.2673E-05	-0.18065	-6.6941E-05	370.5574832440784	37.426	0.30677	38.197	38.02	38.327	0.7709	-0.19008	-0.00040656	NaN	10.8	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2991500	+		59841	16445	43638	43986							0.10056837079355319
VPPSRGRT	8	Unmodified	_VPPSRGRT_					0	0	0			REV__ENST00000400274.5_1_21:47958491-47959840:+|nuORF	REV__ENST00000400274.5_1_21:47958491-47959840:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	435.65087890625	2	435.251226	868.487899	-0.16108	-7.0109E-05	0.021941	9.55E-06	-0.13914	-6.0559E-05	435.2511357797836	99.557	2.8896	99.557	98.352	101.24	0					89	56	2	0	0	0	0.77839	1	36369	36369		0.79363	0	1	5199800	+		59842	24400	43639	43987	58312	58312					0.04839453677391248
VPQEAQKIQA	10	Unmodified	_VPQEAQKIQA_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;ENSG00000152818|ENST00000367545|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	MULTI-MSMS	A375_MHC_IP_R2	2	556.707275390625	2	556.308938	1110.60332	-0.73384	-0.00040824	-0.22983	-0.00012785	-0.96367	-0.0005361	556.3075845840069	125.89	3.0847	126.18	125.47	128.56	0.2951					137	60	5	0	0	0	0.70334	1	49591	49591		10.8	3.1906	1	30956000			59843	5986	43640	43988	58313	58313					0.0524451301771478
VPQLEIVPN	9	Unmodified	_VPQLEIVPN_					0	0	0		CON__P02662	CON__P02662	CON__P02662	MULTI-SECPEP	A375_MHC_IP_R1	1	505.1898498535156	2	504.78985	1007.56515	-0.58776	-0.00029669	-0.020677	-1.0437E-05	-0.60843	-0.00030713	504.7897985136826	90.512	0.66129	90.512	90.235	90.896	0					20	12	2	0	0	0	0.49205	1	33250	33250		27.629	3.6082	1	2375600		+	59844	581	43641	43989	58314	58314					0.06166627103038991
VPQLEIVPN	9	Unmodified	_VPQLEIVPN_					0	0	0		CON__P02662	CON__P02662	CON__P02662	MULTI-SECPEP	A375_MHC_IP_R2	2	505.18994140625	2	504.78985	1007.56515	-0.60332	-0.00030455	0.70816	0.00035747	0.10484	5.2922E-05	504.789814202768	89.822	0.56474	90.554	90.236	90.801	0.7318					29	10	4	0	0	0	0.24324	1	34169	34169		53.833	19.431	1	2856400		+	59845	581	43641	43989	58315	58315					0.06166627103038991
VPQQCVPDDW	10	Unmodified	_VPQQCVPDDW_					0	0	0		ENSG00000134686|ENST00000683057|PHC2;ENST00000459964.1_1_1:33819026-33820459:-|nuORF	ENSG00000134686|ENST00000683057|PHC2	ENSG00000134686|ENST00000683057|PHC2	MULTI-SECPEP	A375_MHC_IP_R1	1	593.6978149414062	2	593.763506	1185.51246	-0.42165	-0.00025036	-0.65581	-0.0003894	-1.0775	-0.00063975	593.7630365051771	76.366	1.9803	76.366	75.966	77.946	0					66	38	2	0	0	0	0.87163	1	27896	27896		9.3831	0	1	1872300			59846	4595	43642	43990	58316	58316					-0.07287699022072047
VPQVLVGAQSG	11	Unmodified	_VPQVLVGAQSG_					0	0	0			REV__ENST00000554481.1_1_15:91489865-91490237:+|nuORF	REV__ENST00000554481.1_1_15:91489865-91490237:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	528.197998046875	2	527.798206	1053.58186	-0.24848	-0.00013115	-0.12899	-6.808E-05	-0.37747	-0.00019923	527.7980685146681	45.509	0.80884	45.509	45.03	45.839	0					22	15	2	0	0	0	0.65968	1	15926	15926		34.932	2.1464	1	4024300	+		59847	26079	43643	43991	58317	58317					0.05721127988999797
VPQVLVGAQSG	11	Unmodified	_VPQVLVGAQSG_					0	0	0			REV__ENST00000554481.1_1_15:91489865-91490237:+|nuORF	REV__ENST00000554481.1_1_15:91489865-91490237:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	528.1973266601562	2	527.798206	1053.58186	-1.1576	-0.00061096	0.12769	6.7396E-05	-1.0299	-0.00054356	527.798255401597	29.537	0.75779	30.236	29.981	30.739	0.69872					32	14	3	0	0	0	0.73984	1	10282	10282		36.506	6.6656	1	14430000	+		59848	26079	43643	43991	58318	58318					0.05721127988999797
VPQVLVGAQSG	11	Unmodified	_VPQVLVGAQSG_					0	0	0			REV__ENST00000554481.1_1_15:91489865-91490237:+|nuORF	REV__ENST00000554481.1_1_15:91489865-91490237:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	528.197509765625	2	527.798206	1053.58186	-0.62422	-0.00032946	-0.10675	-5.6341E-05	-0.73097	-0.00038581	527.7978619788852	44.883	0.61142	45.652	45.39	46.001	0.7691					17	11	2	0	0	0	0.85086	1	16786	16786		28.495	10.348	1	3488100	+		59849	26079	43643	43991	58319	58319					0.05721127988999797
VPQWKRIKPIY	11	Unmodified	_VPQWKRIKPIY_					0	0	0			REV__ENSG00000179454|ENST00000396128|KLHL28	REV__ENSG00000179454|ENST00000396128|KLHL28	MSMS	A375_MHC_IP_R1	1	714.7638549804688	2	714.429722	1426.84489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.943	1	93.943	93.443	94.443	0								0	0	0	0.16297	1	34530	34530		3.2813	0.78282	1		+		59850	21564	43644	43992	58320	58320					0.1485416844466272
VPQYGDYLF	9	Unmodified	_VPQYGDYLF_					0	0	0			REV__L1M2b_dup16|chr1:248719178-248719744:+|1.096023324593728|0.0870652346792882|3.65|432.0|21|1|anti-sense	REV__L1M2b_dup16|chr1:248719178-248719744:+|1.096023324593728|0.0870652346792882|3.65|432.0|21|1|anti-sense	MULTI-MSMS	A375_MHC_IP_R2	2	551.6452026367188	2	551.266207	1100.51786	-0.54957	-0.00030296	2.3783	0.0013111	1.8287	0.0010081	551.2658675275735	99.451	0.40629	100.21	100.07	100.47	0.7609					14	7	3	0	0	0	0.58047	1	37716	37716		15.847	1.0089	1	658720	+		59851	26879	43645	43993	58321	58321					-0.02837652167977467
VPQYGDYLF	9	Unmodified	_VPQYGDYLF_					0	0	0			REV__L1M2b_dup16|chr1:248719178-248719744:+|1.096023324593728|0.0870652346792882|3.65|432.0|21|1|anti-sense	REV__L1M2b_dup16|chr1:248719178-248719744:+|1.096023324593728|0.0870652346792882|3.65|432.0|21|1|anti-sense	MULTI-MATCH	A375_MHC_IP_R1	1		2	551.266207	1100.51786	-0.52909	-0.00029167	-0.56981	-0.00031412	-1.0989	-0.00060579	551.2657952255041	100.34	0.35464	100.34	100.08	100.43	0	0.064243	-0.00070303	NaN	15.847	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1073300	+		59852	26879	43645	43993							-0.02837652167977467
VPQYGDYLF	9	Unmodified	_VPQYGDYLF_					0	0	0			REV__L1M2b_dup16|chr1:248719178-248719744:+|1.096023324593728|0.0870652346792882|3.65|432.0|21|1|anti-sense	REV__L1M2b_dup16|chr1:248719178-248719744:+|1.096023324593728|0.0870652346792882|3.65|432.0|21|1|anti-sense	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	551.266207	1100.51786	-0.54957	-0.00030296	2.3783	0.0013111	1.8287	0.0010081	551.2658675275735	99.451	0.40629	100.21	100.07	100.47	0.7609	-0.064243	0.0025474	NaN	15.847	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	658720	+		59853	26879	43645	43993							-0.02837652167977467
VPRAALHL	8	Unmodified	_VPRAALHL_					0	0	0		ENST00000366756.3_1_6:170597857-170599216:-|nuORF	ENST00000366756.3_1_6:170597857-170599216:-|nuORF	ENST00000366756.3_1_6:170597857-170599216:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	439.5566101074219	2	438.774337	875.534121	-0.33535	-0.00014714	-0.091986	-4.0361E-05	-0.42734	-0.0001875	438.77419871669116	30.83	0.50389	31.549	31.266	31.77	0.71857					12	9	2	0	0	0	0.93416	1	10834	10834		14.582	0	1	2217800			59854	11067	43646	43994	58322	58322					0.09137518579461812
VPRAARGLA	9	Unmodified	_VPRAARGLA_					0	0	0		ENST00000227638.7_1_11:93862184-93862406:+|nuORF	ENST00000227638.7_1_11:93862184-93862406:+|nuORF	ENST00000227638.7_1_11:93862184-93862406:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	456.1825256347656	2	455.782693	909.550834	-0.032539	-1.4831E-05	-0.22652	-0.00010324	-0.25906	-0.00011807	455.7825276547003	142.78	0.20335	142.81	142.69	142.89	0.030731					5	3	2	0	0	0	0.81122	1	55839	55839		0	0	1	2262400			59855	10126	43647	43995	58323	58323					0.09244019465404563
VPRDEGDPF	9	Unmodified	_VPRDEGDPF_					0	0	0			REV__nc|ENSG00000131096|P10082-2|PYY	REV__nc|ENSG00000131096|P10082-2|PYY	MULTI-MSMS	A375_MHC_IP_R2	2	516.6424560546875	2	516.243264	1030.47197	-0.72501	-0.00037428	0.030868	1.5935E-05	-0.69414	-0.00035835	516.2432353543438	45.863	1.1636	46.629	46.353	47.517	0.76519					51	22	3	0	0	0	0.63811	1	17411	17411		12.532	0	1	35027000	+		59856	18589	43648	43996	58324	58324					-0.04204297350179331
VPRNQVRAGP	10	Unmodified	_VPRNQVRAGP_					0	0	0		ENST00000414035.5_1_7:100875905-100880680:-|nuORF;ENST00000308344.9_1_7:100875905-100880710:-|nuORF	ENST00000414035.5_1_7:100875905-100880680:-|nuORF	ENST00000414035.5_1_7:100875905-100880680:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	547.1695556640625	2	547.314889	1092.61522	-0.99255	-0.00054324	0.63268	0.00034627	-0.35988	-0.00019697	547.3153341717501	65.782	0.3051	66.52	66.375	66.68	0.73812					9	5	2	0	0	0	0.91909	1	24901	24901		9.3831	0.035688	1	1035800			59857	10597	43649	43997	58325	58325					0.072621745515562
VPRRLLVRRRL	11	Unmodified	_VPRRLLVRRRL_					0	0	0			REV__ENST00000526349.5_1_8:42729111-42751823:-|nuORF	REV__ENST00000526349.5_1_8:42729111-42751823:-|nuORF	MSMS	A375_MHC_IP_R1	1	717.4863891601562	2	717.486228	1432.9579	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.387	1	93.387	92.887	93.887	0								0	0	0	0.1636	1	34327	34327		0	0	1		+		59858	25771	43650	43998	58326	58326					0.25874281681217326
VPRRRRRRRRK	11	Unmodified	_VPRRRRRRRRK_					0	0	0			REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL	REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL	MSMS	A375_MHC_IP_R2	2	796.525146484375	2	796.525073	1591.03559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.49	1	81.234	80.734	81.734	0.74474								0	0	0	0.1636	1	30558	30558		0	0	1		+		59859	27109	43651	43999	58327	58327					0.2637173238993
VPRRSRNLW	9	Unmodified	_VPRRSRNLW_					0	0	0		ENST00000366669.8_1_1:230820977-230822738:+|nuORF	ENST00000366669.8_1_1:230820977-230822738:+|nuORF	ENST00000366669.8_1_1:230820977-230822738:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	592.1945190429688	2	592.343981	1182.67341	-0.30172	-0.00017872	0.86213	0.00051068	0.56041	0.00033196	592.3448176444032	77.771	0.5112	77.771	77.486	77.998	0					26	9	4	0	0	0	0.67483	1	28319	28319		14.838	0	1	1483700			59860	11066	43652	44000	58328	58328					0.0893785619684877
VPRRYQYI	8	Unmodified	_VPRRYQYI_					0	0	0			REV__nc|ENSG00000136153|Q8WWI1-3|LMO7	REV__nc|ENSG00000136153|Q8WWI1-3|LMO7	MULTI-SECPEP	A375_MHC_IP_R1	1	548.1614990234375	2	547.808908	1093.60326	-0.60483	-0.00033133	0.047469	2.6004E-05	-0.55736	-0.00030533	547.8089684018317	52.505	0.3571	52.505	52.336	52.694	0					12	6	3	0	0	0	0.96296	1	18646	18646		0.69038	0	1	983740	+		59861	18919	43653	44001	58329	58329					0.06020557808369631
VPRSICKL	8	Unmodified	_VPRSICKL_					0	0	0		ENST00000506025.1_2_5:176922079-176930550:+|nuORF	ENST00000506025.1_2_5:176922079-176930550:+|nuORF	ENST00000506025.1_2_5:176922079-176930550:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	458.6744384765625	2	458.275855	914.537157	-0.5965	-0.00027336	-0.58773	-0.00026934	-1.1842	-0.0005427	458.2749229867991	143.68	1.7259	143.68	143.24	144.97	0					67	39	5	0	0	0	0.972	1	55043	55043		2.3027	0	1	7957300			59862	12847	43654	44002	58330	58330					0.07647025641961136
VPRSICKL	8	Unmodified	_VPRSICKL_					0	0	0		ENST00000506025.1_2_5:176922079-176930550:+|nuORF	ENST00000506025.1_2_5:176922079-176930550:+|nuORF	ENST00000506025.1_2_5:176922079-176930550:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	458.6747131347656	2	458.275855	914.537157	-0.15328	-7.0246E-05	-0.77863	-0.00035683	-0.93191	-0.00042707	458.2749704179203	143.69	2.1306	143.71	142.88	145.01	0.024414					71	45	3	0	0	0	0.77797	1	56149	56149		2.3027	0	1	12458000			59863	12847	43654	44002	58331	58331					0.07647025641961136
VPRVLGSS	8	Unmodified	_VPRVLGSS_					0	0	0		ENSG00000108561|ENST00000225698|C1QBP;ENST00000573406.1_1_17:5338186-5342438:-|nuORF	ENSG00000108561|ENST00000225698|C1QBP	ENSG00000108561|ENST00000225698|C1QBP	MULTI-SECPEP	A375_MHC_IP_R1	1	814.8781127929688	1	814.478128	813.470852	-0.74783	-0.00060909	1.6748	0.0013641	0.92696	0.00075499	814.4793986814038	144.66	0.13844	144.66	144.59	144.72	0					5	3	2	0	0	0	0.972	1	55477	55477		0.69038	0	1	587410			59864	2815	43655	44003	58332	58332					0.056655330715898344
VPRVLGSS	8	Unmodified	_VPRVLGSS_					0	0	0		ENSG00000108561|ENST00000225698|C1QBP;ENST00000573406.1_1_17:5338186-5342438:-|nuORF	ENSG00000108561|ENST00000225698|C1QBP	ENSG00000108561|ENST00000225698|C1QBP	MULTI-MATCH	A375_MHC_IP_R2	2		1	814.478128	813.470852	-0.65997	-0.00053753	2.1779	0.0017738	1.5179	0.0012363	814.4798496564606	144.69	0.14966	144.71	144.61	144.76	0.024414	0.027246	2.9808E-05	NaN	0.69038	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	728000			59865	2815	43655	44003							0.056655330715898344
VPSACKQVVSV	11	Unmodified	_VPSACKQVVSV_					0	0	0		ENSG00000066629|ENST00000262233|EML1;nc|ENSG00000066629|O00423-3|EML1	ENSG00000066629|ENST00000262233|EML1	ENSG00000066629|ENST00000262233|EML1	MULTI-MSMS	A375_MHC_IP_R2	2	372.94134521484375	3	372.874236	1115.60088	0.13494	5.0317E-05	2.3063	0.00085997	2.4413	0.00091029	372.87496868586487	38.756	0.86647	39.53	38.997	39.863	0.77451					24	16	2	0	0	0	0.66366	1	14308	14308		11.065	0	1	5110100			59866	1416	43656	44004	58333	58333					0.04770341288394775
VPSCWDPAM	9	Unmodified	_VPSCWDPAM_					0	0	0		ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENST00000526890.5_1_11:3050224-3063461:-|nuORF;ENST00000439280.6_1_11:3050478-3078655:-|nuORF	ENST00000531387.5_1_11:3022346-3069017:-|nuORF	ENST00000531387.5_1_11:3022346-3069017:-|nuORF	MSMS	A375_MHC_IP_R1	1	503.1630859375	2	503.212063	1004.40957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.446	1	24.446	23.946	24.946	0								0	0	0	0.15486	1	6942	6942		8.5933	0	1				59867	13169	43657	44005	58334	58334					-0.09245483014387901
VPSDAETLV	9	Unmodified	_VPSDAETLV_					0	0	0			REV__ZBP1|p.G26D|1|0.13|ENSG00000124256|chr20:57616426-57616426|C/T|missense_variant	REV__ZBP1|p.G26D|1|0.13|ENSG00000124256|chr20:57616426-57616426|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	929.8327026367188	1	930.477854	929.470577	0.18074	0.00016818	-0.95682	-0.0008903	-0.77608	-0.00072212	930.4775906368649	71.848	0.80558	71.848	71.516	72.321	0					43	15	4	0	0	0	0.62767	1	26293	26293		23.148	23.148	1	13187000	+		59868	29012	43658	44006	58335	58335					0.003020685610522378
VPSDAETLV	9	Unmodified	_VPSDAETLV_					0	0	0			REV__ZBP1|p.G26D|1|0.13|ENSG00000124256|chr20:57616426-57616426|C/T|missense_variant	REV__ZBP1|p.G26D|1|0.13|ENSG00000124256|chr20:57616426-57616426|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		1	930.477854	929.470577	-0.43493	-0.0004047	-1.2586	-0.0011711	-1.6936	-0.0015758	930.4774654582277	71.102	0.81104	71.836	71.503	72.314	0.73421	-0.0058207	-0.00016656	NaN	23.148	42	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13687000	+		59869	29012	43658	44006							0.003020685610522378
VPSDPSSYSIY	11	Unmodified	_VPSDPSSYSIY_					0	0	0			REV__nc|ENSG00000009413|O60673-2|REV3L	REV__nc|ENSG00000009413|O60673-2|REV3L	MULTI-MSMS	A375_MHC_IP_R1	1	608.682861328125	2	607.782418	1213.55028	-0.29773	-0.00018095	0.55277	0.00033596	0.25504	0.00015501	607.7816977492895	79.726	1.531	79.726	79.061	80.592	0					59	29	4	0	0	0	0.73016	1	28997	28997		8.7454	1.4562	1	3691200	+		59870	16184	43659	44007	58336	58336					-0.04794909555607774
VPSFWNLI	8	Unmodified	_VPSFWNLI_					0	0	0		ENST00000589852.5_1_19:16301825-16301957:+|nuORF	ENST00000589852.5_1_19:16301825-16301957:+|nuORF	ENST00000589852.5_1_19:16301825-16301957:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	974.9911499023438	1	975.52983	974.522553	0.15888	0.000155	0.16507	0.00016103	0.32396	0.00031603	975.530143530916	128.76	0.25385	128.76	128.53	128.79	0					6	4	2	0	0	0	0.95423	1	49399	49399		12.532	0	1	11310000			59871	13775	43660	44008	58337	58337					0.03427276765478382
VPSLAAKA	8	Unmodified	_VPSLAAKA_					0	0	0			REV__ENSG00000105613|ENST00000251472|MAST1	REV__ENSG00000105613|ENST00000251472|MAST1	MULTI-MSMS	A375_MHC_IP_R1	1	757.4400024414062	1	756.461416	755.454139	-0.5089	-0.00038496	-0.14636	-0.00011072	-0.65526	-0.00049568	756.4612401403574	99.747	0.85667	99.747	99.422	100.28	0					39	16	4	0	0	0	0.77123	1	36551	36551		14.582	0	1	39544000	+		59872	17395	43661	44009	58338	58338					0.06663032185610973
VPSLAAKA	8	Unmodified	_VPSLAAKA_					0	0	0			REV__ENSG00000105613|ENST00000251472|MAST1	REV__ENSG00000105613|ENST00000251472|MAST1	MULTI-MATCH	A375_MHC_IP_R2	2		1	756.461416	755.454139	-0.78108	-0.00059086	0.30493	0.00023067	-0.47615	-0.00036019	756.4615537902318	98.872	0.81255	99.632	99.251	100.06	0.75977	-0.057739	0.00016296	NaN	14.582	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40052000	+		59873	17395	43661	44009							0.06663032185610973
VPSLKQRSS	9	Unmodified	_VPSLKQRSS_					0	0	0		nc|ENSG00000258366|Q9NZ71-8|RTEL1;nc|ENSG00000258366|Q9NZ71-4|RTEL1;nc|ENSG00000258366|Q9NZ71|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;ENSG00000258366|ENST00000360203|RTEL1;nc|ENSG00000258366|Q9NZ71-2|RTEL1;ENST00000496281.1_1_20:62321467-62323226:+|nuORF;nc|ENSG00000258366|Q9NZ71-5|RTEL1;ENST00000480273.5_1_20:62319266-62327135:+|nuORF;nc|ENSG00000258366|Q9NZ71-9|RTEL1	nc|ENSG00000258366|Q9NZ71-8|RTEL1	nc|ENSG00000258366|Q9NZ71-8|RTEL1	MULTI-MSMS	A375_MHC_IP_R2	2	501.6898498535156	2	501.290548	1000.56654	-0.51046	-0.00025589	0.30508	0.00015293	-0.20538	-0.00010296	501.2904667214218	117.97	3.6012	118.58	117.12	120.73	0.60909					213	70	5	0	0	0	0.70307	1	44726	44726		6.7232	0	1	168710000			59874	9916	43662	44010	58339	58339					0.06628261191804086
VPSLRLPREYV	11	Unmodified	_VPSLRLPREYV_					0	0	0		ENST00000582788.5_1_17:37872360-37873734:+|nuORF;ENST00000583038.5_1_17:37872360-37881463:+|nuORF	ENST00000582788.5_1_17:37872360-37873734:+|nuORF	ENST00000582788.5_1_17:37872360-37873734:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	443.6737976074219	3	443.59435	1327.76122	0.10501	4.6584E-05	0.026521	1.1765E-05	0.13154	5.8348E-05	443.59428148265175	38.7	0.40734	38.7	38.475	38.882	0					16	7	3	0	0	0	0.73502	1	13115	13115		4.1166	1.2733	1	4464800			59875	13693	43663	44011	58340	58340					0.11045012276940724
VPSNQKKPV	9	Unmodified	_VPSNQKKPV_					0	0	0			REV__ENST00000589138.5_1_19:14029331-14037891:+|nuORF	REV__ENST00000589138.5_1_19:14029331-14037891:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	499.19500732421875	2	498.795466	995.57638	-0.84528	-0.00042162	0.054006	2.6938E-05	-0.79128	-0.00039468	498.7954151848317	54.151	0.66253	54.902	54.557	55.219	0.75098					21	12	2	0	0	0	0.76187	1	20428	20428		7.2892	0	1	2620100	+		59876	18637	43664	44012	58341	58341					0.07841449197189831
VPSPAKRRAD	10	Unmodified	_VPSPAKRRAD_					0	0	0			REV__ENSG00000112320|ENST00000317357|SOBP	REV__ENSG00000112320|ENST00000317357|SOBP	MULTI-MSMS	A375_MHC_IP_R1	1	366.90118408203125	3	366.21224	1095.61489	0.15323	5.6115E-05	2.9213	0.0010698	3.0746	0.0011259	366.2146384190497	27.508	0.50517	27.508	27.229	27.735	0					19	9	3	0	0	0	0.71076	1	8229	8229		7.4771	0.84669	1	1662600	+		59877	17726	43665	44013	58342	58342					0.0709075483171091
VPSPATRSE	9	Unmodified	_VPSPATRSE_					0	0	0		ENST00000572085.5_1_15:43707600-43785241:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	472.64532470703125	2	472.245806	942.47706	-0.75996	-0.00035889	-0.36199	-0.00017095	-1.122	-0.00052984	472.2456247329959	72.282	0.55569	73.016	72.67	73.226	0.73467					18	10	2	0	0	0	0.55818	1	27410	27410		16.942	1.0951	1	3321000			59878	1437	43666	44014	58343	58343					0.003520065124348548
VPSSVQETYS	10	Unmodified	_VPSSVQETYS_					0	0	0			REV__nc|ENSG00000003393|Q96Q42-3|ALS2	REV__nc|ENSG00000003393|Q96Q42-3|ALS2	MULTI-SECPEP	A375_MHC_IP_R2	2	548.16064453125	2	548.761486	1095.50842	-1.0013	-0.00054945	3.5693	0.0019587	2.568	0.0014092	548.7639754123774	51.617	0.60869	52.37	51.966	52.574	0.75225					16	11	2	0	0	0	0.83355	1	19477	19477		12.241	0	1	1190100	+		59879	25286	43667	44015	58344	58344					-0.035514652441406724
VPTGPGGG	8	Unmodified	_VPTGPGGG_					0	0	0		ENST00000505464.1_1_5:5423001-5437265:+|nuORF	ENST00000505464.1_1_5:5423001-5437265:+|nuORF	ENST00000505464.1_1_5:5423001-5437265:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	641.727294921875	1	641.325316	640.31804	-0.69258	-0.00044417	-3.2536	-0.0020866	-3.9462	-0.0025308	641.3248057821816	70.155	1.2184	70.889	70.437	71.656	0.73421					38	23	2	0	0	0	0.972	1	26555	26555		2.3027	0.24298	1	4276000			59880	12842	43668	44016	58345	58345					-0.016506623250393204
VPTKPIAG	8	Unmodified	_VPTKPIAG_					0	0	0			REV__ENST00000464255.1_1_2:219265892-219269145:+|nuORF	REV__ENST00000464255.1_1_2:219265892-219269145:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	782.876220703125	1	782.477066	781.469789	-1.4541	-0.0011378	0.66723	0.00052209	-0.78687	-0.0006157	782.4774548902074	53.729	0.35943	54.48	54.249	54.609	0.75105					10	6	2	0	0	0	0.31691	1	20278	20278		57.471	13.064	1	3045700	+		59881	25010	43669	44017	58346	58346					0.07031318702649969
VPTKPIAG	8	Unmodified	_VPTKPIAG_					0	0	0			REV__ENST00000464255.1_1_2:219265892-219269145:+|nuORF	REV__ENST00000464255.1_1_2:219265892-219269145:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	782.477066	781.469789	-0.38174	-0.0002987	0.25611	0.0002004	-0.12563	-9.8301E-05	782.4772221968788	54.645	0.35526	54.645	54.415	54.771	0	0.082626	-9.8333E-05	NaN	57.471	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2724300	+		59882	25010	43669	44017							0.07031318702649969
VPTKPIAG	8	Unmodified	_VPTKPIAG_					0	0	0			REV__ENST00000464255.1_1_2:219265892-219269145:+|nuORF	REV__ENST00000464255.1_1_2:219265892-219269145:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	782.477066	781.469789	-1.4541	-0.0011378	0.66723	0.00052209	-0.78687	-0.0006157	782.4774548902074	53.729	0.35943	54.48	54.249	54.609	0.75105	-0.082626	0.00022336	NaN	57.471	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3045700	+		59883	25010	43669	44017							0.07031318702649969
VPTSVMQP	8	Unmodified	_VPTSVMQP_					0	0	0		ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9	ENSG00000177200|ENST00000447540|CHD9	ENSG00000177200|ENST00000447540|CHD9	MULTI-SECPEP	A375_MHC_IP_R2	2	858.84130859375	1	858.438966	857.431689	-0.66173	-0.00056805	1.9591	0.0016817	1.2973	0.0011137	858.4411648819133	106.2	0.30532	106.96	106.83	107.14	0.75977					7	5	2	0	0	0	0.92636	1	40179	40179		16.942	0	1	1436400			59884	8069	43670	44018	58347	58347					-0.0027293527431311304
VPTTVSWDE	9	Unmodified	_VPTTVSWDE_					0	0	0			REV__nc|ENSG00000166960|Q5BJE1-3|CCDC178	REV__nc|ENSG00000166960|Q5BJE1-3|CCDC178	MULTI-MSMS	A375_MHC_IP_R2	2	517.7051391601562	2	517.245472	1032.47639	-0.97927	-0.00050652	0.57009	0.00029488	-0.40918	-0.00021165	517.2456658383472	71.325	0.30466	72.059	71.908	72.213	0.73421					7	5	2	0	0	0	0.5339	1	27023	27023		18.135	3.2967	1	1621600	+		59885	20722	43671	44019	58348	58348					-0.0385483292727713
VPVDLSTVW	9	Unmodified	_VPVDLSTVW_					0	0	0		TIGD4|p.P158L|1|0.4|ENSG00000169989|chr4:152770532-152770532|G/A|missense_variant	TIGD4|p.P158L|1|0.4|ENSG00000169989|chr4:152770532-152770532|G/A|missense_variant	TIGD4|p.P158L|1|0.4|ENSG00000169989|chr4:152770532-152770532|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	509.6985168457031	2	508.276575	1014.5386	-0.70633	-0.00035901	-0.1675	-8.5138E-05	-0.87383	-0.00044415	508.2765748227673	108.59	1.6785	109.34	108.91	110.59	0.74683					89	32	5	0	0	0	0.5339	1	41080	41080		18.135	0	1	49976000			59886	29343	43672	44020	58349	58349					0.03190938211696448
VPVGLNLLP	9	Unmodified	_VPVGLNLLP_					0	0	0		ENST00000449259.1_1_2:65131264-65131681:-|nuORF	ENST00000449259.1_1_2:65131264-65131681:-|nuORF	ENST00000449259.1_1_2:65131264-65131681:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	921.6815795898438	1	921.57678	920.569503	-0.34769	-0.00032042	2.8907	0.002664	2.543	0.0023435	921.5800113550343	129.82	0.15176	130.03	129.94	130.1	0.21419					4	2	2	0	0	0	0.67372	1	51039	51039		9.3474	0	1	4668000			59887	12058	43673	44021	58350	58350					0.10604136316624135
VPVKVRTGTI	10	Unmodified	_VPVKVRTGTI_					0	0	0			REV__nc|ENSG00000105281|Q15758-2|SLC1A5	REV__nc|ENSG00000105281|Q15758-2|SLC1A5	MULTI-SECPEP	A375_MHC_IP_R2	2	356.6144714355469	3	357.229119	1068.66553	-0.4934	-0.00017626	0.050481	1.8033E-05	-0.44292	-0.00015822	357.2291816156705	58.173	0.45593	58.922	58.679	59.135	0.74894					11	8	2	0	0	0	0.93733	1	22030	22030		3.0723	0.98626	1	484450	+		59888	17368	43674	44022	58351	58351					0.1339428415672046
VPVLPLPPKAA	11	Unmodified	_VPVLPLPPKAA_					0	0	0		MOCS3|p.S47L|1|0.42|ENSG00000124217|chr20:50958982-50958982|C/T|missense_variant	MOCS3|p.S47L|1|0.42|ENSG00000124217|chr20:50958982-50958982|C/T|missense_variant	MOCS3|p.S47L|1|0.42|ENSG00000124217|chr20:50958982-50958982|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	367.6996154785156	3	367.905865	1100.69577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.126	1	18.126	17.626	18.626	0								0	0	0	0.16358	1	4302	4302		0.094841	0.094841	1				59889	14393	43675	44023	58352	58352					0.1494464282188801
VPVLPLPPKAA	11	Unmodified	_VPVLPLPPKAA_					0	0	0		MOCS3|p.S47L|1|0.42|ENSG00000124217|chr20:50958982-50958982|C/T|missense_variant	MOCS3|p.S47L|1|0.42|ENSG00000124217|chr20:50958982-50958982|C/T|missense_variant	MOCS3|p.S47L|1|0.42|ENSG00000124217|chr20:50958982-50958982|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	367.6998291015625	3	367.905865	1100.69577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.928	1	18.928	18.428	19.428	0								0	0	0	0.16358	1	4547	4547		0.094841	0.094841	1				59890	14393	43675	44023	58353	58353					0.1494464282188801
VPVLPLPPKAA	11	Unmodified	_VPVLPLPPKAA_					0	0	0		MOCS3|p.S47L|1|0.42|ENSG00000124217|chr20:50958982-50958982|C/T|missense_variant	MOCS3|p.S47L|1|0.42|ENSG00000124217|chr20:50958982-50958982|C/T|missense_variant	MOCS3|p.S47L|1|0.42|ENSG00000124217|chr20:50958982-50958982|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	367.66888427734375	3	367.905865	1100.69577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.235	1	18.838	18.338	19.338	0.60308								0	0	0	0.16358	1	5413	5413		0.094841	0.094841	1				59891	14393	43675	44023	58354	58354					0.1494464282188801
VPVLPLPPKAA	11	Unmodified	_VPVLPLPPKAA_					0	0	0		MOCS3|p.S47L|1|0.42|ENSG00000124217|chr20:50958982-50958982|C/T|missense_variant	MOCS3|p.S47L|1|0.42|ENSG00000124217|chr20:50958982-50958982|C/T|missense_variant	MOCS3|p.S47L|1|0.42|ENSG00000124217|chr20:50958982-50958982|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	367.7572937011719	3	367.905865	1100.69577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.79	1	19.393	18.893	19.893	0.60308								0	0	0	0.16358	1	5608	5608		0.094841	0.094841	1				59892	14393	43675	44023	58355	58355					0.1494464282188801
VPVRVRKKW	9	Unmodified	_VPVRVRKKW_					0	0	0		nc|ENSG00000134668|Q6ZMY3-5|SPOCD1;nc|ENSG00000134668|Q6ZMY3-2|SPOCD1;ENSG00000134668|ENST00000360482|SPOCD1	nc|ENSG00000134668|Q6ZMY3-5|SPOCD1	nc|ENSG00000134668|Q6ZMY3-5|SPOCD1	MULTI-MSMS	A375_MHC_IP_R1	1	390.32061767578125	3	389.92062	1166.74003	-0.046611	-1.8175E-05	-0.0089921	-3.5062E-06	-0.055603	-2.1681E-05	389.9206284761479	27.002	0.45067	27.002	26.728	27.179	0					23	8	3	0	0	0	0.6898	1	8124	8124		4.897	0	1	5271100			59893	4593	43676	44024	58356	58356					0.16333091758747287
VPVTIELRW	9	Unmodified	_VPVTIELRW_					0	0	0			REV__tr|U7SJ06|U7SJ06_FUSNUPhosphoglucomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02050PE=3SV=1	REV__tr|U7SJ06|U7SJ06_FUSNUPhosphoglucomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02050PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	556.66845703125	2	556.826766	1111.63898	-0.50627	-0.00028191	0.25444	0.00014168	-0.25184	-0.00014023	556.8265636152812	77.712	0.71301	77.712	77.386	78.099	0					24	13	3	0	0	0	0.77244	1	28460	28460		5.2307	5.2307	1	2975900	+		59894	28221	43677	44025	58357	58357					0.08762595265397977
VPVTLDDKAQG	11	Unmodified	_VPVTLDDKAQG_					0	0	0			REV__ENST00000374476.3_1_2:177669824-177670178:-|nuORF	REV__ENST00000374476.3_1_2:177669824-177670178:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	571.203857421875	2	571.806228	1141.5979	-0.22368	-0.0001279	1.3159	0.00075245	1.0922	0.00062455	572.3087363225346	132.63	0.20255	132.8	132.7	132.9	0.1759					5	3	2	0	0	0	0.78118	1	52186	52186		26.268	6.9062	1	562420	+		59895	24109	43678	44026	58358	58358					0.03276789435221872
VPWESILETMA	11	Unmodified	_VPWESILETMA_					0	0	0		ENST00000586523.1_1_18:43667332-43667440:-|nuORF	ENST00000586523.1_1_18:43667332-43667440:-|nuORF	ENST00000586523.1_1_18:43667332-43667440:-|nuORF	MSMS	A375_MHC_IP_R2	2	425.9504699707031	3	425.881168	1274.62167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.049	1	19.652	19.152	20.152	0.60308								0	0	0	0.16172	1	5796	5796		9.7643	1.8189	1				59896	13727	43679	44027	58359	58359					-0.004651131225955396
VPWFKGFQL	9	Unmodified	_VPWFKGFQL_					0	0	0			REV__L1MB7_dup9932|chr8:58560717-58562310:+|1.3153910631107617|0.0447379494579893|4.88|444.0|91|2|anti-sense	REV__L1MB7_dup9932|chr8:58560717-58562310:+|1.3153910631107617|0.0447379494579893|4.88|444.0|91|2|anti-sense	MULTI-MSMS	A375_MHC_IP_R1	1	561.7107543945312	2	561.310752	1120.60695	-0.77551	-0.0004353	0.46243	0.00025956	-0.31309	-0.00017574	561.3110225160023	137.16	0.25627	137.16	137.03	137.28	0					9	4	3	0	0	0	0.67372	1	52826	52826		9.3474	9.3474	1	2444600	+		59897	26884	43680	44028	58360	58360					0.05147227582233427
VPWFKGFQL	9	Unmodified	_VPWFKGFQL_					0	0	0			REV__L1MB7_dup9932|chr8:58560717-58562310:+|1.3153910631107617|0.0447379494579893|4.88|444.0|91|2|anti-sense	REV__L1MB7_dup9932|chr8:58560717-58562310:+|1.3153910631107617|0.0447379494579893|4.88|444.0|91|2|anti-sense	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	561.310752	1120.60695	-0.77551	-0.0004353	0.46243	0.00025956	-0.31309	-0.00017574	561.3110225160023	137.16	0.25627	137.16	137.03	137.28	0	0.0053098	2.9753E-05	NaN	9.3474	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2444600	+		59898	26884	43680	44028							0.05147227582233427
VPWFKGFQL	9	Unmodified	_VPWFKGFQL_					0	0	0			REV__L1MB7_dup9932|chr8:58560717-58562310:+|1.3153910631107617|0.0447379494579893|4.88|444.0|91|2|anti-sense	REV__L1MB7_dup9932|chr8:58560717-58562310:+|1.3153910631107617|0.0447379494579893|4.88|444.0|91|2|anti-sense	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	561.310752	1120.60695	-0.42796	-0.00024022	0.37431	0.0002101	-0.053653	-3.0116E-05	561.3110419289618	137.04	0.20633	137.15	137.02	137.22	0.11134	-0.0053098	-6.9171E-05	NaN	9.3474	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2519000	+		59899	26884	43680	44028							0.05147227582233427
VPWVPQGL	8	Unmodified	_VPWVPQGL_					0	0	0			REV__ENSG00000083807|ENST00000263093|SLC27A5	REV__ENSG00000083807|ENST00000263093|SLC27A5	MULTI-MSMS	A375_MHC_IP_R1	1	897.4473876953125	1	895.503615	894.496338	-0.54137	-0.0004848	0.34964	0.00031311	-0.19173	-0.0001717	895.5037747354291	140.05	0.92479	140.05	139.78	140.7	0					37	17	3	0	0	0	0.77781	1	53810	53810		2.8892	0	1	3668800	+		59900	16812	43681	44029	58361	58361					0.044870075940025345
VPWVPQGL	8	Unmodified	_VPWVPQGL_					0	0	0			REV__ENSG00000083807|ENST00000263093|SLC27A5	REV__ENSG00000083807|ENST00000263093|SLC27A5	MULTI-MATCH	A375_MHC_IP_R2	2		1	895.503615	894.496338	-0.2593	-0.0002322	0.028577	2.5591E-05	-0.23072	-0.00020661	895.5035554674126	140.13	0.86987	140.19	139.75	140.62	0.059906	0.068654	-0.00015783	NaN	2.8892	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5077200	+		59901	16812	43681	44029							0.044870075940025345
VPYVTWSLY	9	Unmodified	_VPYVTWSLY_					0	0	0			REV__nc|ENSG00000186510|P51800-3|CLCNKA	REV__nc|ENSG00000186510|P51800-3|CLCNKA	MULTI-SECPEP	A375_MHC_IP_R2	2	377.2647705078125	3	376.530576	1126.5699	-0.036747	-1.3837E-05	1.4056	0.00052925	1.3688	0.00051541	376.86490569883796	37.651	0.41	38.425	38.175	38.585	0.77451					14	7	2	0	0	0	0.74651	1	13816	13816		2.7352	1.9587	1	4174500	+		59902	21845	43682	44030	58362	58362					0.011675112458078729
VPYYEVKY	8	Unmodified	_VPYYEVKY_					0	0	0			REV__ENSG00000111799|ENST00000322507|COL12A1	REV__ENSG00000111799|ENST00000322507|COL12A1	MSMS	A375_MHC_IP_R1	1	530.6502075195312	2	530.771126	1059.5277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.851	1	61.851	61.351	62.351	0								0	0	0	0.16876	1	22317	22317		19.439	1.304	1		+		59903	17695	43683	44031	58363	58363					0.00031535837410956447
VQAAATAVQDE	11	Unmodified	_VQAAATAVQDE_					0	0	0			REV__nc|ENSG00000170011|Q8NFW9-2|MYRIP	REV__nc|ENSG00000170011|Q8NFW9-2|MYRIP	MULTI-MSMS	A375_MHC_IP_R1	1	551.6370849609375	2	551.772385	1101.53022	-0.49254	-0.00027177	4.3285	0.0023884	3.836	0.0021166	552.2751876297967	102.21	0.30465	102.21	101.95	102.25	0					7	5	2	0	0	0	0.69231	1	37538	37538		16.149	1.3108	1	941230	+		59904	20962	43684	44032	58364	58364					-0.016486604955616713
VQAEPLRPF	9	Unmodified	_VQAEPLRPF_					0	0	0			REV__KIF26A|p.S1267F|1|0.43|ENSG00000066735|chr14:104176588-104176588|C/T|missense_variant	REV__KIF26A|p.S1267F|1|0.43|ENSG00000066735|chr14:104176588-104176588|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	529.1949462890625	2	528.795466	1055.57638	-0.57926	-0.00030631	-0.069174	-3.6579E-05	-0.64844	-0.00034289	528.795251690163	32.42	0.45735	33.157	32.96	33.417	0.73691					13	8	2	0	0	0	0.65246	1	11565	11565		10.824	2.9138	1	2453000	+		59905	26850	43685	44033	58365	58365					0.0508144919717779
VQAERTISFFS	11	Unmodified	_VQAERTISFFS_					0	0	0			REV__THRAP3|p.S560F|1|0.23|ENSG00000054118|chr1:36289698-36289698|C/T|missense_variant	REV__THRAP3|p.S560F|1|0.23|ENSG00000054118|chr1:36289698-36289698|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	428.9505310058594	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.245	1	48.245	47.745	48.745	0								0	0	0	0.1624	1	17008	17008		6.2344	1.0359	1		+		59906	28104	43686	44034	58366	58366					0.020521672179029338
VQAIFPTPDP	10	Unmodified	_VQAIFPTPDP_					0	0	0		ENSG00000100393|ENST00000263253|EP300;ENSG00000005339|ENST00000262367|CREBBP;nc|ENSG00000005339|Q92793-2|CREBBP	ENSG00000100393|ENST00000263253|EP300;ENSG00000005339|ENST00000262367|CREBBP	ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	A375_MHC_IP_R2	2	543.1862182617188	2	542.787307	1083.56006	-0.76056	-0.00041282	-2.6914	-0.0014609	-3.452	-0.0018737	542.7864058435445	42.395	0.40731	43.168	42.962	43.369	0.7724					14	7	3	0	0	0	0.55789	1	15796	15796		24.021	2.2739	1	1900800			59907	2172;890	43687	44035	58367	58367					0.02162323240418118
VQAIFPTPDP	10	Unmodified	_VQAIFPTPDP_					0	0	0		ENSG00000100393|ENST00000263253|EP300;ENSG00000005339|ENST00000262367|CREBBP;nc|ENSG00000005339|Q92793-2|CREBBP	ENSG00000100393|ENST00000263253|EP300;ENSG00000005339|ENST00000262367|CREBBP	ENSG00000100393|ENST00000263253|EP300	MULTI-MATCH	A375_MHC_IP_R1	1		2	542.787307	1083.56006	-0.39638	-0.00021515	-2.4816	-0.001347	-2.878	-0.0015622	542.7863306625122	43.171	0.45818	43.171	42.942	43.4	0	0.00171	0.0001472	NaN	24.021	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1445800			59908	2172;890	43687	44035							0.02162323240418118
VQAIRSNDI	9	Unmodified	_VQAIRSNDI_					0	0	0			REV__ENST00000472108.1_1_9:132641664-132642549:+|nuORF	REV__ENST00000472108.1_1_9:132641664-132642549:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	508.6797790527344	2	508.28018	1014.54581	-0.89669	-0.00045577	-0.26548	-0.00013494	-1.1622	-0.00059071	508.2800506663334	50.649	1.6745	51.403	51.209	52.884	0.75406					43	32	2	0	0	0	0.34746	1	19089	19089		31.268	5.0002	1	3360600	+		59909	18968	43688	44036	58368	58368					0.03911670812135526
VQALELQLQVP	11	Unmodified	_VQALELQLQVP_					0	0	0		ENSG00000130997|ENST00000511885|POLN	ENSG00000130997|ENST00000511885|POLN	ENSG00000130997|ENST00000511885|POLN	MSMS	A375_MHC_IP_R2	2	619.346435546875	2	619.36117	1236.70779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.65	1	113.37	112.87	113.87	0.72458								0	0	0	0.16191	1	42464	42464		8.7454	1.4562	1				59910	4298	43689	44037	58369	58369					0.09890214774418382
VQARIKLAPG	10	Unmodified	_VQARIKLAPG_					0	0	0			REV__ENSG00000187634|ENST00000616016|SAMD11	REV__ENSG00000187634|ENST00000616016|SAMD11	MULTI-MSMS	A375_MHC_IP_R1	1	351.9572448730469	3	351.557348	1051.65021	-0.20035	-7.0435E-05	-0.24976	-8.7804E-05	-0.45011	-0.00015824	351.55724531161815	27.422	0.50527	27.422	27.179	27.684	0					15	9	2	0	0	0	0.69306	1	8374	8374		8.4443	0	1	2531900	+		59911	22035	43690	44038	58370	58370					0.12645417359499334
VQARIKLAPG	10	Unmodified	_VQARIKLAPG_					0	0	0			REV__ENSG00000187634|ENST00000616016|SAMD11	REV__ENSG00000187634|ENST00000616016|SAMD11	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	351.557348	1051.65021	-0.20035	-7.0435E-05	-0.24976	-8.7804E-05	-0.45011	-0.00015824	351.55724531161815	27.422	0.50527	27.422	27.179	27.684	0	0.067417	-5.2909E-05	NaN	8.4443	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2531900	+		59912	22035	43690	44038							0.12645417359499334
VQARIKLAPG	10	Unmodified	_VQARIKLAPG_					0	0	0			REV__ENSG00000187634|ENST00000616016|SAMD11	REV__ENSG00000187634|ENST00000616016|SAMD11	MULTI-MATCH	A375_MHC_IP_R2	2		3	351.557348	1051.65021	-0.55379	-0.00019469	-0.094355	-3.3171E-05	-0.64814	-0.00022786	351.5572568873758	26.627	0.51058	27.287	27.109	27.62	0.65992	-0.067417	0.00011099	NaN	8.4443	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1861400	+		59913	22035	43690	44038							0.12645417359499334
VQARIRMVL	9	Unmodified	_VQARIRMVL_					0	0	0		ENSG00000172890|ENST00000319023|NADSYN1;nc|ENSG00000172890|Q6IA69-2|NADSYN1	ENSG00000172890|ENST00000319023|NADSYN1	ENSG00000172890|ENST00000319023|NADSYN1	MULTI-SECPEP	A375_MHC_IP_R2	2	543.2020263671875	2	543.334236	1084.65392	-0.78997	-0.00042922	-3.1382	-0.0017051	-3.9282	-0.0021343	543.3324039923873	83.209	0.40614	83.949	83.848	84.254	0.73962					9	7	2	0	0	0	0.75466	1	31656	31656		7.9102	2.1783	1	1285900			59914	7743	43691	44039	58371	58371					0.11497763861734711
VQARYVLR	8	Unmodified	_VQARYVLR_					0	0	0			REV__ENSG00000171815|ENST00000306549|PCDHB1	REV__ENSG00000171815|ENST00000306549|PCDHB1	MULTI-SECPEP	A375_MHC_IP_R1	1	503.2028503417969	2	502.803626	1003.5927	-0.73035	-0.00036722	-0.091297	-4.5905E-05	-0.82164	-0.00041312	502.8032479684936	143.74	0.855	143.74	143.34	144.2	0					24	17	3	0	0	0	0.972	1	55145	55145		2.3027	0	1	3559600	+		59915	21099	43692	44040	58372	58372					0.09104575153946826
VQARYVLR	8	Unmodified	_VQARYVLR_					0	0	0			REV__ENSG00000171815|ENST00000306549|PCDHB1	REV__ENSG00000171815|ENST00000306549|PCDHB1	MULTI-SECPEP	A375_MHC_IP_R2	2	503.2032470703125	2	502.803626	1003.5927	-0.44775	-0.00022513	0.36603	0.00018404	-0.08172	-4.1089E-05	502.80358067652793	143.8	1.6572	143.82	143.39	145.05	0.024414					37	31	2	0	0	0	0.972	1	56188	56188		2.3027	0	1	3281200	+		59916	21099	43692	44040	58373	58373					0.09104575153946826
VQATEIHNI	9	Unmodified	_VQATEIHNI_					0	0	0		nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF;ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	MULTI-SECPEP	A375_MHC_IP_R2	2	513.1563720703125	2	512.774731	1023.53491	-0.8036	-0.00041207	-0.31138	-0.00015967	-1.115	-0.00057173	512.7745767116488	39.978	0.96374	40.753	40.371	41.335	0.77451					50	18	5	0	0	0	0.11711	1	14784	14784		51.63	1.6968	1	71219000			59917	4918	43693	44041	58374	58374					0.024082684378413433
VQATTKNH	8	Unmodified	_VQATTKNH_					0	0	0			REV__ENST00000498771.5_1_7:134132683-134136556:-|nuORF	REV__ENST00000498771.5_1_7:134132683-134136556:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	450.6582336425781	2	449.740691	897.466829	0.22344	0.00010049	-0.047157	-2.1208E-05	0.17628	7.928E-05	449.74045945410245	48.339	0.70865	48.339	48.122	48.831	0					23	13	3	0	0	0	0.77028	1	16994	16994		14.838	0.93222	1	4368000	+		59918	16841	43694	44042	58375	58375					0.013994435778499792
VQAVQHIQV	9	Unmodified	_VQAVQHIQV_					0	0	0			REV__ENSG00000119681|ENST00000261978|LTBP2	REV__ENSG00000119681|ENST00000261978|LTBP2	MSMS	A375_MHC_IP_R1	1	511.2078552246094	2	511.293091	1020.57163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.902	1	73.902	73.402	74.402	0								0	0	0	0.12568	1	26917	26917		34.102	8.7031	1		+		59919	18082	43695	44043	58376	58376					0.062165650544329765
VQCIRWLL	8	Unmodified	_VQCIRWLL_					0	0	0			REV__ENST00000373795.6_1_1:29485887-29486910:-|nuORF	REV__ENST00000373795.6_1_1:29485887-29486910:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	515.6725463867188	2	515.796955	1029.57936	-0.68977	-0.00035578	0.4848	0.00025006	-0.20497	-0.00010572	515.7972310810011	78.821	0.25548	79.566	79.438	79.693	0.74474					6	4	2	0	0	0	0.94479	1	29920	29920		8.5933	0	1	581390	+		59920	24099	43696	44044	58377	58377					0.06575001050327955
VQCMSFLM	8	Unmodified	_VQCMSFLM_					0	0	0			REV__ENSG00000158077|ENST00000299481|NLRP14	REV__ENSG00000158077|ENST00000299481|NLRP14	MULTI-MSMS	A375_MHC_IP_R2	2	480.1817321777344	2	479.713385	957.412216	-0.51659	-0.00024782	-0.081999	-3.9336E-05	-0.59859	-0.00028715	479.7132611089663	67.648	0.81581	68.385	68.001	68.817	0.73631					34	15	3	0	0	0	0.75805	1	25715	25715		18.135	5.6034	1	5589100	+		59921	20060	43697	44045	58378	58378					-0.0681935088107366
VQDAENLLV	9	Unmodified	_VQDAENLLV_					0	0	0		nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1;ENST00000532415.5_1_16:18480742-18495490:-|nuORF;ENST00000532739.1_1_16:16450692-16458759:+|nuORF;ENST00000568591.5_1_16:2156634-2167660:-|nuORF;ENST00000534164.5_1_16:15012355-15014181:+|nuORF;ENST00000525846.6_1_16:18443548-18445649:-|nuORF	nc|ENSG00000008710|P98161-2|PKD1	nc|ENSG00000008710|P98161-2|PKD1	MULTI-SECPEP	A375_MHC_IP_R2	2	500.4749450683594	2	500.769114	999.523675	-0.56831	-0.00028459	0.065366	3.2733E-05	-0.50295	-0.00025186	500.76897992483805	102.23	0.40598	103	102.77	103.18	0.76428					10	7	2	0	0	0	0.67483	1	38669	38669		20.454	0	1	769430			59922	962	43698	44046	58379	58379					0.023894463437045488
VQDCGEEEDV	10	Unmodified	_VQDCGEEEDV_					0	0	0			REV__ENSG00000177917|ENST00000326446|ARL6IP6	REV__ENSG00000177917|ENST00000326446|ARL6IP6	MULTI-MSMS	A375_MHC_IP_R1	1	562.1173706054688	2	561.716418	1121.41828	-0.49174	-0.00027622	0.087086	4.8917E-05	-0.40466	-0.0002273	561.7173554062964	89.634	0.50499	89.634	89.375	89.88	0					16	9	2	0	0	0	0.70651	1	32991	32991		9.3831	0	1	1816900	+		59923	21475	43699	44047	58380	58380					-0.1375688263487973
VQDGENDYI	9	Unmodified	_VQDGENDYI_					0	0	0			REV__ENSG00000138759|ENST00000512123|FRAS1	REV__ENSG00000138759|ENST00000512123|FRAS1	MULTI-SECPEP	A375_MHC_IP_R2	2	527.1492309570312	2	526.730186	1051.44582	-0.53788	-0.00028332	-3.0768	-0.0016207	-3.6147	-0.001904	526.7282952790059	81.415	0.70857	82.158	81.723	82.431	0.74293					17	13	2	0	0	0	0.71541	1	30940	30940		7.2892	0	1	2287900	+		59924	19118	43700	44048	58381	58381					-0.07784611312331435
VQDQEEFCD	9	Unmodified	_VQDQEEFCD_					0	0	0			REV__HS1BP3|p.F169C|1|0.48|ENSG00000118960|chr2:20638553-20638553|A/C|missense_variant	REV__HS1BP3|p.F169C|1|0.48|ENSG00000118960|chr2:20638553-20638553|A/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	557.68896484375	2	556.713679	1111.4128	-0.6031	-0.00033575	0.070808	3.942E-05	-0.53229	-0.00029633	556.7137462467438	46.662	1.2213	47.425	46.903	48.124	0.7623					61	23	3	0	0	0	0.69674	1	17553	17553		7.2892	2.5332	1	12257000	+		59925	26759	43701	44049	58382	58382					-0.13844561426685686
VQDQWWSE	8	Unmodified	_VQDQWWSE_					0	0	0			REV__ENSG00000111331|ENST00000228928|OAS3	REV__ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	A375_MHC_IP_R1	1	539.6348876953125	2	539.235439	1076.45632	-0.7236	-0.00039019	0.68401	0.00036884	-0.03959	-2.1349E-05	539.2356846240447	58.486	0.86422	58.486	58.177	59.041	0					34	16	3	0	0	0	0.74945	1	21045	21045		20.454	0	1	2312700	+		59926	17665	43702	44050	58383	58383					-0.07884583867235051
VQDRDLSY	8	Unmodified	_VQDRDLSY_					0	0	0		ENST00000495340.5_2_6:31938132-31938487:-|nuORF	ENST00000495340.5_2_6:31938132-31938487:-|nuORF	ENST00000495340.5_2_6:31938132-31938487:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	497.69537353515625	2	498.243264	994.471974	-0.63531	-0.00031654	-1.2127	-0.0006042	-1.848	-0.00092074	498.2428247289395	38.052	0.35648	38.052	37.812	38.168	0					9	6	2	0	0	0	0.96266	1	12891	12891		11.64	0	1	1719200			59927	12705	43703	44051	58384	58384					-0.02548297350199391
VQDSDDEEKA	10	Unmodified	_VQDSDDEEKA_					0	0	0			REV__ENSG00000076650|ENST00000170564|GPATCH1	REV__ENSG00000076650|ENST00000170564|GPATCH1	MSMS	A375_MHC_IP_R1	1	568.211181640625	2	568.241115	1134.46768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.478	1	40.478	39.978	40.978	0								0	0	0	0.14983	1	13912	13912		18.146	3.3081	1		+		59928	16678	43704	44052	58385	58385					-0.09417851354419327
VQDSQYSGI	9	Unmodified	_VQDSQYSGI_					0	0	0		ENSG00000162924|ENST00000394479|REL;nc|ENSG00000162924|Q04864|REL	ENSG00000162924|ENST00000394479|REL	ENSG00000162924|ENST00000394479|REL	MULTI-MSMS	A375_MHC_IP_R2	2	499.1363525390625	2	498.735271	995.45599	-0.7312	-0.00036468	1.9312	0.00096316	1.2	0.00059848	498.736130669155	39.05	1.1207	39.824	39.25	40.371	0.77451					33	21	2	0	0	0	0.050162	1	14481	14481		64.236	26.262	1	1749000			59929	6614	43705	44053	58386	58386					-0.04192003587081672
VQDTRGNRSV	10	Unmodified	_VQDTRGNRSV_					0	0	0			REV__nc|ENSG00000170579|O14490-4|DLGAP1	REV__nc|ENSG00000170579|O14490-4|DLGAP1	MULTI-MSMS	A375_MHC_IP_R2	2	380.2641906738281	3	377.867021	1130.57923	0.18166	6.8644E-05	-3.5629	-0.0013463	-3.3812	-0.0012777	377.8645934669787	27.588	1.2169	28.266	27.843	29.06	0.67857					115	23	8	0	0	0	0.69833	1	9701	9701		7.9454	0	1	268510000	+		59930	27353	43706	44054	58387	58387					0.019166725840250365
VQDTRIHLV	9	Unmodified	_VQDTRIHLV_					0	0	0		ENSG00000106624|ENST00000223357|AEBP1;nc|ENSG00000106624|Q8IUX7-2|AEBP1	ENSG00000106624|ENST00000223357|AEBP1;nc|ENSG00000106624|Q8IUX7-2|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	MULTI-MSMS	A375_MHC_IP_R2	2	361.2765808105469	3	360.876857	1079.60874	-0.42607	-0.00015376	0.068475	2.4711E-05	-0.35759	-0.00012905	360.8768572642844	37.683	0.4093	38.457	38.227	38.636	0.77451					13	7	2	0	0	0	0.67787	1	13851	13851		8.9762	1.8745	1	2825000			59931	2703;14529	43707	44055	58388	58388					0.07212236600162214
VQDTRIHLV	9	Unmodified	_VQDTRIHLV_					0	0	0		ENSG00000106624|ENST00000223357|AEBP1;nc|ENSG00000106624|Q8IUX7-2|AEBP1	ENSG00000106624|ENST00000223357|AEBP1;nc|ENSG00000106624|Q8IUX7-2|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	MULTI-MATCH	A375_MHC_IP_R1	1		3	360.876857	1079.60874	0.20341	7.3405E-05	-0.21193	-7.648E-05	-0.0085216	-3.0752E-06	360.87671388550706	38.602	0.45882	38.602	38.423	38.882	0	0.072577	-0.0001376	NaN	8.9762	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2340000			59932	2703;14529	43707	44055							0.07212236600162214
VQDVEVHLEDQ	11	Unmodified	_VQDVEVHLEDQ_					0	0	0		ENSG00000173992|ENST00000533244|CCS;ENST00000526058.1_1_11:66360677-66366729:+|nuORF;ENST00000530384.5_1_11:66360639-66366729:+|nuORF	ENSG00000173992|ENST00000533244|CCS	ENSG00000173992|ENST00000533244|CCS	MULTI-MSMS	A375_MHC_IP_R2	2	437.9454040527344	3	437.545613	1309.61501	-0.3077	-0.00013463	0.12916	5.6515E-05	-0.17854	-7.8118E-05	437.54561503689746	32.024	0.60929	32.76	32.401	33.01	0.73692					28	11	3	0	0	0	0.65374	1	11343	11343		19.144	7.6261	1	5026900			59933	7846	43708	44056	58389	58389					-0.027413347496121787
VQDYLRRF	8	Unmodified	_VQDYLRRF_					0	0	0		ENST00000475550.5_1_2:64117178-64118358:+|nuORF;nc|ENSG00000169764|Q16851-2|UGP2;ENSG00000169764|ENST00000337130|UGP2	ENST00000475550.5_1_2:64117178-64118358:+|nuORF	ENST00000475550.5_1_2:64117178-64118358:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6870727539062	2	548.79854	1095.58253	-1.1621	-0.00063778	-0.13849	-7.6002E-05	-1.3006	-0.00071378	548.7985027411198	26.466	0.55853	27.126	26.907	27.466	0.65992					23	10	3	0	0	0	0.972	1	9023	9023		6.2058	6.2058	1	3995300			59934	7438	43709	44057	58390	58390					0.038559674286943846
VQEASNQSI	9	Unmodified	_VQEASNQSI_					0	0	0		ENST00000252804.8_1_2:1637774-1637948:-|nuORF	ENST00000252804.8_1_2:1637774-1637948:-|nuORF	ENST00000252804.8_1_2:1637774-1637948:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	975.3632202148438	1	975.474165	974.466889	0.071749	6.9989E-05	-3.0809	-0.0030053	-3.0091	-0.0029353	975.4707863766878	98.821	0.6572	99.581	99.201	99.858	0.75977					18	12	2	0	0	0	0.32092	1	37450	37450		29.082	0.59474	1	6143300			59935	10211	43710	44058	58391	58391					-0.021366012128055445
VQEECRTAK	9	Unmodified	_VQEECRTAK_					0	0	0		nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;ENST00000473691.1_1_X:79938122-79975072:-|nuORF;nc|ENSG00000165288|Q6RI45-5|BRWD3	nc|ENSG00000165288|Q6RI45-3|BRWD3	nc|ENSG00000165288|Q6RI45-3|BRWD3	MULTI-SECPEP	A375_MHC_IP_R1	1	532.1832275390625	2	532.263673	1062.51279	-0.6243	-0.00033229	-1.3083	-0.00069634	-1.9326	-0.0010286	532.2625121416446	36.147	0.60903	36.147	35.83	36.439	0					17	11	2	0	0	0	0.60917	1	12063	12063		19.257	0	1	1887700			59936	6937	43711	44059	58392	58392					-0.015962793022254118
VQEGTEPNW	9	Unmodified	_VQEGTEPNW_					0	0	0			REV__nc|ENSG00000135541|Q8N157-2|AHI1	REV__nc|ENSG00000135541|Q8N157-2|AHI1	MSMS	A375_MHC_IP_R2	2	529.9622802734375	2	530.240721	1058.46689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.455	1	48.216	47.716	48.716	0.76128								0	0	0	0.15486	1	17794	17794		11.64	0	1		+		59937	18863	43712	44060	58393	58393					-0.06000601212804213
VQELIINKDP	10	Unmodified	_VQELIINKDP_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;nc|ENSG00000125755|Q92797-2|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	A375_MHC_IP_R1	1	585.20361328125	2	584.832246	1167.64994	-0.12497	-7.3088E-05	2.503	0.0014639	2.3781	0.0013908	584.8337812100033	56.441	0.30362	56.441	56.194	56.498	0					6	5	2	0	0	0	0.87163	1	20237	20237		9.3831	0	1	497920			59938	3986	43713	44061	58394	58394					0.07281952849007212
VQENEPQKL	9	Unmodified	_VQENEPQKL_					0	0	0		nc|ENSG00000007402|Q9NY47-4|CACNA2D2;nc|ENSG00000007402|Q9NY47-3|CACNA2D2;nc|ENSG00000007402|Q9NY47-5|CACNA2D2;ENSG00000007402|ENST00000424201|CACNA2D2;nc|ENSG00000007402|Q9NY47|CACNA2D2;ENST00000487413.1_1_3:50453473-50541058:-|nuORF	nc|ENSG00000007402|Q9NY47-4|CACNA2D2	nc|ENSG00000007402|Q9NY47-4|CACNA2D2	MULTI-SECPEP	A375_MHC_IP_R1	1	361.92303466796875	3	362.192623	1083.55604	-0.15929	-5.7695E-05	1.5915	0.00057642	1.4322	0.00051872	362.19303594870155	26.447	0.45696	26.447	26.322	26.779	0					13	8	2	0	0	0	0.72623	1	8006	8006		18.373	7.5492	1	1631900			59939	14452	43714	44062	58395	58395					0.01760233746722406
VQENLYFQRCL	11	Unmodified	_VQENLYFQRCL_					0	0	0		ENST00000479534.5_1_1:17395541-17401618:-|nuORF;ENSG00000117115|ENST00000375486|PADI2	ENST00000479534.5_1_1:17395541-17401618:-|nuORF	ENST00000479534.5_1_1:17395541-17401618:-|nuORF	MSMS	A375_MHC_IP_R1	1	707.0230712890625	2	706.853187	1411.69182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.548	1	90.548	90.048	91.048	0								0	0	0	0.16223	1	33277	33277		7.1017	0	1				59940	3455	43715	44063	58396	58396					0.002441852658876087
VQENRLVY	8	Unmodified	_VQENRLVY_					0	0	0			REV__OR6S1|p.A294V|1|0.38|ENSG00000181803|chr14:20640811-20640811|G/A|missense_variant	REV__OR6S1|p.A294V|1|0.38|ENSG00000181803|chr14:20640811-20640811|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	511.1766662597656	2	510.777274	1019.53999	-1.0648	-0.00054387	-0.14462	-7.3867E-05	-1.2094	-0.00061774	510.77720303629917	58.401	0.61159	59.15	58.879	59.491	0.74895					17	11	2	0	0	0	0.86263	1	22105	22105		26.884	0	1	2902600	+		59941	27697	43716	44064	58397	58397					0.031005723004682295
VQEREKPS	8	Unmodified	_VQEREKPS_					0	0	0			REV__nc|ENSG00000169607|Q8IYA6-2|CKAP2L	REV__nc|ENSG00000169607|Q8IYA6-2|CKAP2L	MULTI-SECPEP	A375_MHC_IP_R1	1	486.313232421875	2	486.759081	971.503609	-0.4538	-0.00022089	-0.91607	-0.00044591	-1.3699	-0.0006668	486.75831683150193	32.844	0.30476	32.844	32.684	32.989	0					7	5	2	0	0	0	0.91495	1	10609	10609		4.3292	0	1	1306600	+		59942	20936	43717	44065	58398	58398					0.016716954037633514
VQEYTKREEE	10	Unmodified	_VQEYTKREEE_					0	0	0		ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	MULTI-MSMS	A375_MHC_IP_R1	1	437.9453125	3	437.545613	1309.61501	-0.37598	-0.00016451	-0.21016	-9.1956E-05	-0.58614	-0.00025646	437.5455646069629	32.56	0.55374	32.56	32.333	32.887	0					27	10	3	0	0	0	0.69871	1	10563	10563		12.873	0.016656	1	4856100			59943	9360	43718	44066	58399	58399					-0.027413347496121787
VQGKQVFDGNK	11	Unmodified	_VQGKQVFDGNK_					0	0	0			REV__tr|U7SJL4|U7SJL4_FUSNUMembranefusionproteinbiotin-lipoyllikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02097PE=3SV=1	REV__tr|U7SJL4|U7SJL4_FUSNUMembranefusionproteinbiotin-lipoyllikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02097PE=3SV=1	MSMS	A375_MHC_IP_R2	2	610.6984252929688	2	610.325119	1218.63569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.179	1	77.922	77.422	78.422	0.74293								0	0	0	0.1624	1	29307	29307		6.1918	0.46	1		+		59944	28240	43719	44067	58400	58400					0.035113004207232734
VQGLLSETYL	10	Unmodified	_VQGLLSETYL_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7;nc|ENSG00000166508|P33993-2|MCM7	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MULTI-MSMS	A375_MHC_IP_R1	1	1124.4866943359375	1	1122.60412	1121.59684	0.17985	0.0002019	-0.012232	-1.3732E-05	0.16762	0.00018817	1122.6040539280755	68.873	0.65896	68.873	68.565	69.224	0					28	12	3	0	0	0	0.6806	1	24971	24971		14.838	14.838	1	11887000			59945	7084	43720	44068	58401	58401					0.04090575066334168
VQGLLSETYL	10	Unmodified	_VQGLLSETYL_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7;nc|ENSG00000166508|P33993-2|MCM7	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	1122.60412	1121.59684	0.17985	0.0002019	-0.012232	-1.3732E-05	0.16762	0.00018817	1122.6040539280755	68.873	0.65896	68.873	68.565	69.224	0	0.041298	0.00015802	NaN	14.838	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11887000			59946	7084	43720	44068							0.04090575066334168
VQGLLSETYL	10	Unmodified	_VQGLLSETYL_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7;nc|ENSG00000166508|P33993-2|MCM7	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MULTI-MATCH	A375_MHC_IP_R2	2		1	1122.60412	1121.59684	0.21777	0.00024447	-0.27486	-0.00030856	-0.057091	-6.409E-05	1122.6037000335793	68.055	0.61081	68.79	68.51	69.121	0.73511	-0.041298	-0.00013681	NaN	14.838	30	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12513000			59947	7084	43720	44068							0.04090575066334168
VQHCNDSTL	9	Unmodified	_VQHCNDSTL_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MSMS	A375_MHC_IP_R2	2	508.6799621582031	2	508.726923	1015.43929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.19	1	50.944	50.444	51.444	0.75406								0	0	0	0.15486	1	18873	18873		12.532	0.89125	1		+		59948	22689	43721	44069	58402	58402					-0.06780827744694307
VQHCNDSTL	9	Unmodified	_VQHCNDSTL_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MSMS	A375_MHC_IP_R2	2	508.67462158203125	2	508.726923	1015.43929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.231	1	50.985	50.485	51.485	0.75406								0	0	0	0.15486	1	18890	18890		12.532	0.89125	1		+		59949	22689	43721	44069	58403	58403					-0.06780827744694307
VQHFKTQIF	9	Unmodified	_VQHFKTQIF_					0	0	0		nc|ENSG00000123908|Q9UKV8-2|AGO2;ENSG00000123908|ENST00000220592|AGO2;ENST00000517293.5_1_8:141582675-141645605:-|nuORF	nc|ENSG00000123908|Q9UKV8-2|AGO2	nc|ENSG00000123908|Q9UKV8-2|AGO2	MULTI-SECPEP	A375_MHC_IP_R2	2	382.9573669433594	3	383.213469	1146.61858	-0.36685	-0.00014058	-3.165	-0.0012129	-3.5318	-0.0013534	383.54701483340705	49.445	0.45459	50.203	49.843	50.297	0.75736					11	8	2	0	0	0	0.65246	1	18545	18545		10.8	0	1	1201800			59950	3862	43722	44070	58404	58404					0.05113424605565342
VQHRCDPARE	10	Unmodified	_VQHRCDPARE_					0	0	0		ENSG00000166188|ENST00000299237|ZNF319	ENSG00000166188|ENST00000299237|ZNF319	ENSG00000166188|ENST00000299237|ZNF319	MULTI-SECPEP	A375_MHC_IP_R1	1	404.95965576171875	3	404.196373	1209.56729	-0.64265	-0.00025976	0.14178	5.7308E-05	-0.50087	-0.00020245	404.196449000106	27.053	0.25076	27.053	26.928	27.179	0					6	4	2	0	0	0	0.93961	1	8172	8172		3.3196	0	1	2076200			59951	7038	43723	44071	58405	58405					-0.029112674307953057
VQHWRGDDL	9	Unmodified	_VQHWRGDDL_					0	0	0			REV__nc|ENSG00000129214|P04278-4|SHBG	REV__nc|ENSG00000129214|P04278-4|SHBG	MULTI-SECPEP	A375_MHC_IP_R1	1	376.2659606933594	3	375.852712	1124.53631	0.39016	0.00014664	-0.79502	-0.00029881	-0.40486	-0.00015217	375.8523532181019	28.719	0.30387	28.719	28.541	28.845	0					9	5	2	0	0	0	0.75466	1	8863	8863		8.1555	1.1184	1	1173800	+		59952	18483	43724	44072	58406	58406					-0.020980974733902258
VQIALDYLKRR	11	Unmodified	_VQIALDYLKRR_					0	0	0		nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;ENST00000521821.1_1_6:56535374-56707943:-|nuORF	nc|ENSG00000151914|Q03001|DST	nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	A375_MHC_IP_R1	1	688.3131713867188	2	687.914436	1373.81432	-0.97708	-0.00067214	-0.71683	-0.00049312	-1.6939	-0.0011653	687.9137443737588	143.05	0.90874	143.05	142.54	143.45	0					51	17	4	0	0	0	0.99955	1	54854	54854		2.9952	2.6882	1	15753000			59953	5934	43725	44073	58407	58407					0.14236390059568294
VQIEVHILAL	10	Unmodified	_VQIEVHILAL_					0	0	0			REV__ENSG00000113555|ENST00000231484|PCDH12	REV__ENSG00000113555|ENST00000231484|PCDH12	MULTI-MSMS	A375_MHC_IP_R2	2	378.94146728515625	3	378.900891	1133.68084	0.19946	7.5576E-05	-0.23642	-8.9581E-05	-0.036962	-1.4005E-05	378.9007760810359	68.909	0.50771	69.644	69.474	69.982	0.73512					17	9	3	0	0	0	0.71946	1	26218	26218		3.5871	0.5148	1	2032700	+		59954	17785	43726	44074	58408	58408					0.11935150953877383
VQIGDIVTV	9	Unmodified	_VQIGDIVTV_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	A375_MHC_IP_R1	1	472.67669677734375	2	472.276575	942.538597	-0.23423	-0.00011062	-0.11939	-5.6385E-05	-0.35362	-0.00016701	472.2763417599409	106.6	1.0239	106.6	106.06	107.08	0					26	19	2	0	0	0	0.040308	1	39150	39150		68.081	6.7232	1	2109800			59955	5311	43727	44075	58409	58409					0.0650293821172454
VQIGDIVTV	9	Unmodified	_VQIGDIVTV_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	A375_MHC_IP_R2	2	472.676025390625	2	472.276575	942.538597	-0.57967	-0.00027376	-0.24893	-0.00011756	-0.8286	-0.00039133	472.27628784006134	105.86	0.76503	106.62	106.32	107.09	0.75977					22	14	2	0	0	0	0.064406	1	40035	40035		58.679	4.846	1	1839700			59956	5311	43727	44075	58410	58410					0.0650293821172454
VQIGYKDTRI	10	Unmodified	_VQIGYKDTRI_					0	0	0			REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	398.2642822265625	3	398.227667	1191.66117	-0.40012	-0.00015934	1.4195	0.00056527	1.0193	0.00040593	398.5627340643439	20.176	1.064	20.786	20.146	21.21	0.61029					58	17	5	0	0	0	0.67901	1	6081	6081		14.957	5.4132	1	9911300	+		59957	28281	43728	44076	58411	58411					0.073007749431099
VQIIIEHLQEK	11	Unmodified	_VQIIIEHLQEK_					0	0	0		ZNFX1|p.T300I|1|0.21|ENSG00000124201|chr20:49270913-49270913|G/A|missense_variant	ZNFX1|p.T300I|1|0.21|ENSG00000124201|chr20:49270913-49270913|G/A|missense_variant	ZNFX1|p.T300I|1|0.21|ENSG00000124201|chr20:49270913-49270913|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	451.3320007324219	3	450.59776	1348.77145	-0.18149	-8.1778E-05	-0.089704	-4.042E-05	-0.27119	-0.0001222	450.5977223162657	34.129	0.50637	34.129	33.95	34.456	0					20	9	3	0	0	0	0.7353	1	11247	11247		3.8459	0	1	6708500			59958	30254	43729	44077	58412	58412					0.11101575211500858
VQIIIEHLQEK	11	Unmodified	_VQIIIEHLQEK_					0	0	0		ZNFX1|p.T300I|1|0.21|ENSG00000124201|chr20:49270913-49270913|G/A|missense_variant	ZNFX1|p.T300I|1|0.21|ENSG00000124201|chr20:49270913-49270913|G/A|missense_variant	ZNFX1|p.T300I|1|0.21|ENSG00000124201|chr20:49270913-49270913|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	450.59776	1348.77145	-0.18149	-8.1778E-05	-0.089704	-4.042E-05	-0.27119	-0.0001222	450.5977223162657	34.129	0.50637	34.129	33.95	34.456	0	0.036571	-2.4825E-05	NaN	3.8459	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6708500			59959	30254	43729	44077							0.11101575211500858
VQIILLLRR	9	Unmodified	_VQIILLLRR_					0	0	0			REV__ENST00000463634.6_1_6:4056876-4060847:+|nuORF	REV__ENST00000463634.6_1_6:4056876-4060847:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	562.1821899414062	2	562.387326	1122.7601	-0.34211	-0.0001924	0.70975	0.00039915	0.36764	0.00020676	562.8879457186179	81.986	0.25336	81.986	81.758	82.011	0					5	4	2	0	0	0	0.81779	1	29932	29932		0	0	1	674700	+		59960	25001	43730	44078	58413	58413					0.20362842698705208
VQILHRLL	8	Unmodified	_VQILHRLL_					0	0	0		nc|ENSG00000138698|P52306-2|RAP1GDS1;nc|ENSG00000138698|P52306-3|RAP1GDS1;nc|ENSG00000138698|P52306-4|RAP1GDS1;ENSG00000138698|ENST00000408927|RAP1GDS1;nc|ENSG00000138698|P52306-5|RAP1GDS1;nc|ENSG00000138698|P52306-6|RAP1GDS1	nc|ENSG00000138698|P52306-2|RAP1GDS1	nc|ENSG00000138698|P52306-2|RAP1GDS1	MSMS	A375_MHC_IP_R1	1	496.3587951660156	2	496.324194	990.633835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.14	1	141.14	140.64	141.64	0								0	0	0	0.16876	1	54186	54186		0.79363	0	1				59961	5024	43731	44079	58414	58414					0.13814336193399868
VQILWNEF	8	Unmodified	_VQILWNEF_					0	0	0			REV__ZCCHC18|p.T60I|1|1.0|ENSG00000166707|chrX:104114290-104114290|C/T|missense_variant	REV__ZCCHC18|p.T60I|1|1.0|ENSG00000166707|chrX:104114290-104114290|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	524.6953125	2	524.776742	1047.53893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.905	1	79.65	79.15	80.15	0.74474								0	0	0	0.16876	1	29948	29948		13.508	2.684	1		+		59962	20694	43732	44080	58415	58415					0.017063579315390598
VQIMFMKKK	9	Unmodified	_VQIMFMKKK_					0	0	0		SERPINB10|p.M219I|1|0.38|ENSG00000242550|chr18:63933071-63933071|G/A|missense_variant	SERPINB10|p.M219I|1|0.38|ENSG00000242550|chr18:63933071-63933071|G/A|missense_variant	SERPINB10|p.M219I|1|0.38|ENSG00000242550|chr18:63933071-63933071|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	384.6240539550781	3	384.892574	1151.65589	-0.39771	-0.00015308	0.56028	0.00021565	0.16257	6.2571E-05	384.8928182820055	38.188	0.71661	38.963	38.382	39.098	0.77451					18	13	2	0	0	0	0.78753	1	13998	13998		0.96228	0.96228	1	6268200			59963	29137	43733	44081	58416	58416					0.08613056555304865
VQIQQQLLN	9	Unmodified	_VQIQQQLLN_					0	0	0			REV__nc|ENSG00000110693|P35712-3|SOX6;REV__nc|ENSG00000134532|P35711-4|SOX5	REV__nc|ENSG00000134532|P35711-4|SOX5	MULTI-MSMS	A375_MHC_IP_R1	1	542.3670043945312	2	542.31148	1082.60841	-0.76412	-0.00041439	0.0026733	1.4498E-06	-0.76145	-0.00041294	542.3116065507106	90.291	0.65952	90.291	89.931	90.59	0					23	12	3	0	0	0	0.2002	2	33234	33147;33234		37.974	0	1	2796000	+		59964	18785;17635	43734	44082	58417;58418	58418					0.07040816880339662
VQIQRPVV	8	Unmodified	_VQIQRPVV_					0	0	0		nc|ENSG00000155066|Q8N271-3|PROM2;ENST00000487138.5_1_2:95944617-95954741:+|nuORF;ENSG00000155066|ENST00000317620|PROM2	nc|ENSG00000155066|Q8N271-3|PROM2	nc|ENSG00000155066|Q8N271-3|PROM2	MULTI-SECPEP	A375_MHC_IP_R1	1	470.1927490234375	2	469.792727	937.5709	-0.36193	-0.00017003	0.1225	5.7551E-05	-0.23943	-0.00011248	469.7927384440633	64.1	0.5054	64.1	63.837	64.343	0					16	9	2	0	0	0	0.90224	1	23200	23200		26.341	0	1	3123100			59965	6122	43735	44083	58419	58419					0.09961770405368497
VQIQRQKIRS	10	Unmodified	_VQIQRQKIRS_					0	0	0		ENSG00000112343|ENST00000357085|TRIM38	ENSG00000112343|ENST00000357085|TRIM38	ENSG00000112343|ENST00000357085|TRIM38	MULTI-MSMS	A375_MHC_IP_R1	1	628.7823486328125	2	628.383303	1254.75205	-0.66471	-0.00041769	-1.2111	-0.00076105	-1.8758	-0.0011787	628.3824409231725	129.07	1.1705	129.07	128.43	129.6	0					58	22	3	0	0	0	0.71944	1	49779	49779		3.5965	0.60125	1	27505000			59966	3079	43736	44084	58420	58420					0.13486663711250912
VQISDLEVRK	10	Unmodified	_VQISDLEVRK_					0	0	0		ENST00000486520.1_1_21:48078635-48080886:+|nuORF;ENST00000482508.5_1_21:48063482-48080886:+|nuORF	ENST00000486520.1_1_21:48078635-48080886:+|nuORF	ENST00000486520.1_1_21:48078635-48080886:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	396.2959899902344	3	396.231189	1185.67174	-0.30566	-0.00012111	0.9476	0.00037547	0.64194	0.00025436	396.2314552695761	26.887	1.1101	26.887	26.474	27.584	0					59	21	4	0	0	0	0.70174	1	8248	8248		11.518	2.5416	1	17754000			59967	12525	43737	44085	58421	58421					0.08632757597547425
VQKALKKADK	10	Unmodified	_VQKALKKADK_					0	0	0		nc|ENSG00000164347|Q969S9-2|GFM2;nc|ENSG00000164347|Q969S9-3|GFM2;ENSG00000164347|ENST00000296805|GFM2	nc|ENSG00000164347|Q969S9-2|GFM2	nc|ENSG00000164347|Q969S9-2|GFM2	MULTI-MSMS	A375_MHC_IP_R2	2	377.27679443359375	3	376.908157	1127.70264	-0.38955	-0.00014683	0.38142	0.00014376	-0.0081382	-3.0674E-06	376.90833537679845	36.846	0.40654	37.616	37.41	37.816	0.7709					12	7	2	0	0	0	0.64017	1	13489	13489		17.863	1.5886	1	3929800			59968	6832	43738	44086	58422	58422					0.14389955702472434
VQKCKLCARE	10	Unmodified	_VQKCKLCARE_					0	0	0		ENSG00000162384|ENST00000294360|CZIB	ENSG00000162384|ENST00000294360|CZIB	ENSG00000162384|ENST00000294360|CZIB	MULTI-MSMS	A375_MHC_IP_R2	2	589.7432250976562	2	589.312643	1176.61073	-0.61293	-0.00036121	-0.15987	-9.4215E-05	-0.77281	-0.00045542	589.8138406984255	127.44	1.3716	127.71	127.36	128.73	0.26593					46	26	2	0	0	0	0.72014	1	50279	50279		3.2813	0.28607	1	17666000			59969	6523	43739	44087	58423	58423					0.02949206022094586
VQKELLQDSGK	11	Unmodified	_VQKELLQDSGK_					0	0	0			REV__nc|ENSG00000020219|A6NM43|CCT8L1P	REV__nc|ENSG00000020219|A6NM43|CCT8L1P	MULTI-MSMS	A375_MHC_IP_R1	1	415.9665832519531	3	415.566348	1243.67722	0.057831	2.4033E-05	0.9877	0.00041046	1.0455	0.00043449	415.56675185446693	32.751	0.50489	32.751	32.535	33.04	0					21	9	3	0	0	0	0.72713	1	10624	10624		11.631	0.83186	1	4730600	+		59970	22373	43740	44088	58424	58424					0.0651243638935739
VQKHLTKLRHW	11	Unmodified	_VQKHLTKLRHW_					0	0	0		ENSG00000118579|ENST00000237380|MED28	ENSG00000118579|ENST00000237380|MED28	ENSG00000118579|ENST00000237380|MED28	MULTI-MSMS	A375_MHC_IP_R1	1	723.8159790039062	2	723.428045	1444.84154	-0.92131	-0.0006665	-0.9677	-0.00070006	-1.889	-0.0013666	723.4279211221701	143.11	1.87	143.11	141.58	143.45	0					77	36	5	0	0	0	0.73897	1	55018	55018		0.35063	0	1	26971000			59971	3554	43741	44089	58425	58425					0.13690918390625484
VQKKRRNL	8	Unmodified	_VQKKRRNL_					0	0	0			REV__nc|ENSG00000101282|Q2I0M5-2|RSPO4	REV__nc|ENSG00000101282|Q2I0M5-2|RSPO4	MULTI-SECPEP	A375_MHC_IP_R1	1	521.6874389648438	2	521.335624	1040.6567	-0.63114	-0.00032904	2.2933	0.0011956	1.6622	0.00086656	521.3369479941807	46.695	0.20391	46.695	46.545	46.749	0					5	3	2	0	0	0	0.972	1	16367	16367		0	0	1	922480	+		59972	17154	43742	44090	58426	58426					0.13799355310879946
VQKLYEDY	8	Unmodified	_VQKLYEDY_					0	0	0			REV__nc|ENSG00000070081|P80303-2|NUCB2	REV__nc|ENSG00000070081|P80303-2|NUCB2	MULTI-SECPEP	A375_MHC_IP_R1	1	528.678955078125	2	529.263665	1056.51278	-0.38008	-0.00020116	-0.22804	-0.00012069	-0.60812	-0.00032185	529.2635033722188	78.904	0.35448	78.904	78.756	79.111	0					9	6	2	0	0	0	0.97144	1	28815	28815		9.3474	0	1	1447100	+		59973	16566	43743	44091	58427	58427					-0.013219560305742561
VQKNTFRGF	9	Unmodified	_VQKNTFRGF_					0	0	0		ENSG00000112303|ENST00000326499|VNN2;nc|ENSG00000112303|O95498-6|VNN2	ENSG00000112303|ENST00000326499|VNN2	ENSG00000112303|ENST00000326499|VNN2	MULTI-SECPEP	A375_MHC_IP_R1	1	548.68701171875	2	548.79854	1095.58253	-0.68085	-0.00037365	-0.49872	-0.00027369	-1.1796	-0.00064735	548.7982479525028	27.139	0.7554	27.139	26.828	27.584	0					31	14	3	0	0	0	0.74412	1	8222	8222		10.074	0	1	3414100			59974	3072	43744	44092	58428	58428					0.03855967428717122
VQKQASLFP	9	Unmodified	_VQKQASLFP_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;ENST00000474216.5_1_1:11126777-11137033:-|nuORF	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-SECPEP	A375_MHC_IP_R2	2	508.6922302246094	2	509.290017	1016.56548	-0.89607	-0.00045636	0.10002	5.0938E-05	-0.79605	-0.00040542	509.29005286415645	55.865	0.86484	56.615	56.186	57.051	0.75014					55	15	5	0	0	0	0.50702	1	20992	20992		25.399	1.3787	1	42858000			59975	7646	43745	44093	58429	58429					0.05786046822879598
VQKRRRARYKY	11	Unmodified	_VQKRRRARYKY_					0	0	0			REV__SOX17|p.P139A|1|0.61|ENSG00000164736|chr8:54459165-54459165|C/G|missense_variant	REV__SOX17|p.P139A|1|0.61|ENSG00000164736|chr8:54459165-54459165|C/G|missense_variant	MSMS	A375_MHC_IP_R2	2	762.4771728515625	2	762.455125	1522.8957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.776	1	93.515	93.015	94.015	0.73902								0	0	0	0.16331	1	35278	35278		1.4819	1.1313	1		+		59976	28026	43746	44094	58430	58430					0.15516510542192918
VQKRYPSI	8	Unmodified	_VQKRYPSI_					0	0	0			REV__nc|ENSG00000155363|Q9HCE1-2|MOV10	REV__nc|ENSG00000155363|Q9HCE1-2|MOV10	MULTI-SECPEP	A375_MHC_IP_R1	1	495.6871032714844	2	495.790184	989.565815	-0.22645	-0.00011227	-0.67982	-0.00033705	-0.90627	-0.00044932	495.7898072587189	43.386	0.76244	43.386	42.841	43.603	0					18	14	2	0	0	0	0.94479	1	14966	14966		8.5933	0	1	3139200	+		59977	19922	43747	44095	58431	58431					0.0706146654274562
VQKSATQVAVT	11	Unmodified	_VQKSATQVAVT_					0	0	0			REV__PHYHIPL|p.Y187Lfs*3|1|0.22|ENSG00000165443|chr10:59238662-59238663|-/T|frameshift_variant	REV__PHYHIPL|p.Y187Lfs*3|1|0.22|ENSG00000165443|chr10:59238662-59238663|-/T|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	566.7229614257812	2	566.322045	1130.62954	-0.60041	-0.00034003	0.12814	7.2568E-05	-0.47228	-0.00026746	566.3220073096004	130.35	1.9264	130.35	129.65	131.58	0					47	37	2	0	0	0	0.72649	1	50198	50198		12.241	1.4411	1	25751000	+		59978	20582	43748	44096	58432	58432					0.06944782189157195
VQLIRKHPQ	9	Unmodified	_VQLIRKHPQ_					0	0	0		ENSG00000118655|ENST00000650450|DCLRE1B;ENST00000466480.1_1_1:114448336-114454776:+|nuORF	ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	MULTI-SECPEP	A375_MHC_IP_R1	1	560.2119140625	2	559.843282	1117.67201	-0.42561	-0.00023828	-0.46197	-0.00025863	-0.88758	-0.00049691	559.843022364417	28.636	0.30449	28.636	28.491	28.795	0					9	5	2	0	0	0	0.76187	1	8817	8817		3.9444	0	1	1510100			59979	3555	43749	44097	58433	58433					0.11788222108066293
VQLLRKVFAK	10	Unmodified	_VQLLRKVFAK_					0	0	0			REV__ENSG00000115816|ENST00000234170|CEBPZ	REV__ENSG00000115816|ENST00000234170|CEBPZ	MULTI-SECPEP	A375_MHC_IP_R1	1	1202.041748046875	1	1201.77794	1200.77066	-0.27723	-0.00033317	4.3111	0.005181	4.0339	0.0048479	1202.7821767276719	133.84	0.15092	133.84	133.76	133.91	0					4	2	2	0	0	0	0.91556	1	51618	51618		3.2813	0	1	2018900	+		59980	17914	43750	44098	58434	58434					0.17830825353121327
VQLMLHFRWNW	11	Unmodified	_VQLMLHFRWNW_					0	0	0		ENSG00000179002|ENST00000375371|TAS1R2	ENSG00000179002|ENST00000375371|TAS1R2	ENSG00000179002|ENST00000375371|TAS1R2	MULTI-SECPEP	A375_MHC_IP_R1	1	510.1559143066406	3	510.599329	1528.77616	-0.03767	-1.9234E-05	0.41739	0.00021312	0.37972	0.00019388	510.93368238787986	48.603	0.50544	48.603	48.325	48.831	0					26	9	4	0	0	0	1.0002	1	17148	17148		0.45452	0	1	4161800			59981	8197	43751	44099	58435	58435					0.032921808732908175
VQLMLHFRWNW	11	Unmodified	_VQLMLHFRWNW_					0	0	0		ENSG00000179002|ENST00000375371|TAS1R2	ENSG00000179002|ENST00000375371|TAS1R2	ENSG00000179002|ENST00000375371|TAS1R2	MULTI-SECPEP	A375_MHC_IP_R2	2	510.155517578125	3	510.599329	1528.77616	-0.63588	-0.00032468	0.87465	0.0004466	0.23878	0.00012192	510.5995357571842	47.904	0.4536	48.665	48.429	48.883	0.76128					18	8	3	0	0	0	0.99916	1	17981	17981		2.4348	1.808	1	2752700			59982	8197	43751	44099	58436	58436					0.032921808732908175
VQLPFHFTRME	11	Unmodified	_VQLPFHFTRME_					0	0	0			REV__ENST00000567297.5_1_16:20818275-20837201:+|nuORF	REV__ENST00000567297.5_1_16:20818275-20837201:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	468.4662170410156	3	468.90794	1403.70199	-0.59748	-0.00028017	1.572	0.00073712	0.9745	0.00045695	469.2427974323301	26.043	0.45602	26.043	25.765	26.221	0					13	8	2	0	0	0	1.0002	1	7786	7786		1.3296	0.96297	1	2428300	+		59983	26252	43752	44100	58437	58437					0.016287929910959065
VQLPLPAK	8	Unmodified	_VQLPLPAK_					0	0	0			REV__ENST00000262059.8_1_12:54104964-54105024:-|nuORF	REV__ENST00000262059.8_1_12:54104964-54105024:-|nuORF	MSMS	A375_MHC_IP_R1	1	433.28533935546875	2	433.278921	864.543289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.99	1	138.99	138.49	139.49	0								0	0	0	0.16876	1	53443	53443		0.69038	0	1		+		59984	23196	43753	44101	58438	58438					0.10559867145116186
VQLSHDPLEL	10	Unmodified	_VQLSHDPLEL_					0	0	0		ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	MULTI-SECPEP	A375_MHC_IP_R1	1	384.26824951171875	3	384.208273	1149.60299	0.36452	0.00014005	0.3451	0.00013259	0.70962	0.00027264	384.54263089834404	35.069	0.25521	35.069	34.963	35.218	0					5	4	2	0	0	0	0.91057	1	11624	11624		14.218	6.7411	1	671430			59985	6160	43754	44102	58439	58439					0.03417093297844076
VQLWCLKG	8	Unmodified	_VQLWCLKG_					0	0	0			REV__ENSG00000178997|ENST00000458580|EXD1	REV__ENSG00000178997|ENST00000458580|EXD1	MSMS	A375_MHC_IP_R1	1	473.6597595214844	2	473.762581	945.510608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.991	1	70.991	70.491	71.491	0								0	0	0	0.16876	1	25785	25785		18.135	5.6034	1		+		59986	21533	43755	44103	58440	58440					0.035673367506319664
VQMKPVKSV	9	Unmodified	_VQMKPVKSV_					0	0	0		nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3	nc|ENSG00000105289|O95049-5|TJP3	nc|ENSG00000105289|O95049-5|TJP3	MULTI-SECPEP	A375_MHC_IP_R2	2	507.63177490234375	2	508.30207	1014.58959	-0.74492	-0.00037864	-1.0704	-0.00054409	-1.8153	-0.00092273	508.3013472615217	77.078	0.4045	77.821	77.657	78.062	0.74293					12	7	2	0	0	0	0.73363	1	29234	29234		1.4819	0	1	848040			59987	2586	43756	44104	58441	58441					0.08287563984913504
VQNELFHMYRY	11	Unmodified	_VQNELFHMYRY_					0	0	0			REV__ENSG00000257093|ENST00000536163|DENND11	REV__ENSG00000257093|ENST00000536163|DENND11	MULTI-MSMS	A375_MHC_IP_R1	1	375.9293212890625	4	375.682956	1498.70272	0.15691	5.8947E-05	1.8769	0.0007051	2.0338	0.00076405	375.6835801787418	19.257	0.54602	19.257	19.23	19.776	0					21	11	3	0	0	0	0.73647	1	4890	4890		1.1098	0	1	13899000	+		59988	22888	43757	44105	58442	58442					-0.026684123598215592
VQNHYYPWF	9	Unmodified	_VQNHYYPWF_					0	0	0			REV__ENST00000476412.5_1_1:114308604-114340019:-|nuORF	REV__ENST00000476412.5_1_1:114308604-114340019:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	627.143798828125	2	627.290548	1252.56654	-0.68514	-0.00042978	2.2708	0.0014245	1.5857	0.00099467	627.2931586907565	95.324	0.25534	95.324	95.16	95.415	0					6	4	2	0	0	0	0.78348	1	35012	35012		1.8442	0	1	1832500	+		59989	25183	43758	44106	58443	58443					-0.049637388082373946
VQNPALRLV	9	Unmodified	_VQNPALRLV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	A375_MHC_IP_R1	1	505.7110595703125	2	505.311284	1008.60801	-0.48759	-0.00024639	0.15316	7.7394E-05	-0.33443	-0.00016899	505.3113379776451	65.437	0.56129	65.437	65.156	65.717	0					20	10	2	0	0	0	0.047602	1	23713	23713		65.235	31.133	1	3803100			59990	1916	43759	44107	58444	58444					0.10405441951127159
VQNPALRLV	9	Unmodified	_VQNPALRLV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	A375_MHC_IP_R2	2	505.710693359375	2	505.311284	1008.60801	-0.64708	-0.00032698	-0.017853	-9.0212E-06	-0.66493	-0.000336	505.3112268928787	64.529	0.71342	65.269	64.85	65.564	0.74022					26	13	3	0	0	0	0.064992	1	24446	24446		68.081	25.986	1	3729800			59991	1916	43759	44107	58445	58445					0.10405441951127159
VQPCSRCGY	9	Unmodified	_VQPCSRCGY_					0	0	0		nc|ENSG00000197893|Q86VF7-4|NRAP;nc|ENSG00000197893|Q86VF7-3|NRAP;ENSG00000197893|ENST00000359988|NRAP;nc|ENSG00000197893|Q86VF7-2|NRAP	nc|ENSG00000197893|Q86VF7-4|NRAP	nc|ENSG00000197893|Q86VF7-4|NRAP	MULTI-SECPEP	A375_MHC_IP_R2	2	507.376953125	2	506.720587	1011.42662	-0.70706	-0.00035828	1.6311	0.00082652	0.92406	0.00046824	507.2218663844311	80.059	0.35488	80.804	80.505	80.86	0.74474					9	6	2	0	0	0	0.78348	1	30323	30323		4.3292	0	1	1039000			59992	9207	43760	44108	58446	58446					-0.07863562408579128
VQPFESDRREQ	11	Unmodified	_VQPFESDRREQ_					0	0	0			REV__ENST00000429271.1_1_21:28515665-28516046:-|nuORF	REV__ENST00000429271.1_1_21:28515665-28516046:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	696.2390747070312	2	695.839122	1389.66369	-0.74598	-0.00051908	0.12738	8.8639E-05	-0.61859	-0.00043044	695.8392879853287	46.725	0.81965	46.725	46.495	47.315	0					19	15	2	0	0	0	0.56199	1	16426	16426		26.268	0	1	3638200	+		59993	24687	43761	44109	58447	58447					-0.015554213898440139
VQPFESDRREQ	11	Unmodified	_VQPFESDRREQ_					0	0	0			REV__ENST00000429271.1_1_21:28515665-28516046:-|nuORF	REV__ENST00000429271.1_1_21:28515665-28516046:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	696.2389526367188	2	695.839122	1389.66369	-0.63373	-0.00044098	0.048336	3.3634E-05	-0.5854	-0.00040734	695.839133961894	46.035	0.45504	46.8	46.603	47.058	0.76519					11	8	2	0	0	0	0.59391	1	17256	17256		23.79	3.3752	1	3671800	+		59994	24687	43761	44109	58448	58448					-0.015554213898440139
VQPFESDRREQ	11	Unmodified	_VQPFESDRREQ_					0	0	0			REV__ENST00000429271.1_1_21:28515665-28516046:-|nuORF	REV__ENST00000429271.1_1_21:28515665-28516046:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	695.839122	1389.66369	-0.74598	-0.00051908	0.12738	8.8639E-05	-0.61859	-0.00043044	695.8392879853287	46.725	0.81965	46.725	46.495	47.315	0	-0.037617	4.7882E-05	NaN	26.268	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3638200	+		59995	24687	43761	44109							-0.015554213898440139
VQPFESDRREQ	11	Unmodified	_VQPFESDRREQ_					0	0	0			REV__ENST00000429271.1_1_21:28515665-28516046:-|nuORF	REV__ENST00000429271.1_1_21:28515665-28516046:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	695.839122	1389.66369	-0.63373	-0.00044098	0.048336	3.3634E-05	-0.5854	-0.00040734	695.839133961894	46.035	0.45504	46.8	46.603	47.058	0.76519	0.037617	-6.2128E-05	NaN	26.268	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3671800	+		59996	24687	43761	44109							-0.015554213898440139
VQPGAKPA	8	Unmodified	_VQPGAKPA_					0	0	0		FNDC1|p.H688Q|1|0.77|ENSG00000164694|chr6:159232576-159232576|C/G|missense_variant	FNDC1|p.H688Q|1|0.77|ENSG00000164694|chr6:159232576-159232576|C/G|missense_variant	FNDC1|p.H688Q|1|0.77|ENSG00000164694|chr6:159232576-159232576|C/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	767.8412475585938	1	767.441015	766.433738	-0.83742	-0.00064267	1.1108	0.00085248	0.2734	0.00020982	767.4416262480999	143.47	0.59094	143.47	143.29	143.89	0					21	11	3	0	0	0	0.77839	1	55051	55051		0.79363	0	1	6396200			59997	14010	43762	44110	58449	58449					0.041178615257990714
VQPGAKPA	8	Unmodified	_VQPGAKPA_					0	0	0		FNDC1|p.H688Q|1|0.77|ENSG00000164694|chr6:159232576-159232576|C/G|missense_variant	FNDC1|p.H688Q|1|0.77|ENSG00000164694|chr6:159232576-159232576|C/G|missense_variant	FNDC1|p.H688Q|1|0.77|ENSG00000164694|chr6:159232576-159232576|C/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	767.85302734375	1	767.441015	766.433738	-0.73125	-0.00056119	1.3067	0.0010028	0.57548	0.00044164	767.4417651203103	143.49	0.55168	143.51	143.39	143.94	0.024414					20	10	3	0	0	0	0.77839	2	56073	56073;56090		0.79363	0	1	6859900			59998	14010	43762	44110	58450;58451	58450					0.041178615257990714
VQPGLYLGVA	10	Unmodified	_VQPGLYLGVA_					0	0	0			REV__ENST00000569593.1_1_1:175290175-175299610:+|nuORF	REV__ENST00000569593.1_1_1:175290175-175299610:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1015.986328125	1	1016.57751	1015.57023	-0.18449	-0.00018755	-0.48189	-0.00048988	-0.66638	-0.00067743	1016.5768155967495	121.52	0.40775	121.52	121.26	121.67	0					13	7	2	0	0	0	0.78945	1	45034	45034		19.257	0	1	26338000	+		59999	26271	43763	44111	58452	58452					0.06306930965649826
VQPQGTII	8	Unmodified	_VQPQGTII_					0	0	0			REV__nc|ENSG00000089692|P18627-2|LAG3	REV__nc|ENSG00000089692|P18627-2|LAG3	MULTI-MSMS	A375_MHC_IP_R1	1	855.8944091796875	1	855.493444	854.486168	-0.66948	-0.00057273	1.0489	0.00089729	0.37938	0.00032455	855.4940451408723	143.61	0.34146	143.61	143.49	143.84	0					11	6	3	0	0	0	0.77839	1	55106	55106		0.79363	0	1	2095400	+		60000	27134	43764	44112	58453	58453					0.05310399868778859
VQPQGTII	8	Unmodified	_VQPQGTII_					0	0	0			REV__nc|ENSG00000089692|P18627-2|LAG3	REV__nc|ENSG00000089692|P18627-2|LAG3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	855.493444	854.486168	-0.66948	-0.00057273	1.0489	0.00089729	0.37938	0.00032455	855.4940451408723	143.61	0.34146	143.61	143.49	143.84	0	-0.028292	-4.9295E-05	NaN	0.79363	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2095400	+		60001	27134	43764	44112							0.05310399868778859
VQPQGTII	8	Unmodified	_VQPQGTII_					0	0	0			REV__nc|ENSG00000089692|P18627-2|LAG3	REV__nc|ENSG00000089692|P18627-2|LAG3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	855.493444	854.486168	-0.45687	-0.00039085	1.1599	0.00099228	0.70301	0.00060142	855.4942970084073	143.64	0.45129	143.66	143.54	143.99	0.024414	0.028292	4.5692E-05	NaN	0.79363	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2207600	+		60002	27134	43764	44112							0.05310399868778859
VQPQLRRPF	9	Unmodified	_VQPQLRRPF_					0	0	0		ENST00000582436.5_1_17:27237055-27251401:-|nuORF;nc|ENSG00000109118|Q96QT6-5|PHF12;nc|ENSG00000109118|Q96QT6-3|PHF12;ENSG00000109118|ENST00000332830|PHF12;ENST00000582655.5_1_17:27237828-27251299:-|nuORF;nc|ENSG00000109118|Q96QT6-2|PHF12	ENST00000582436.5_1_17:27237055-27251401:-|nuORF	ENST00000582436.5_1_17:27237055-27251401:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	571.1842651367188	2	570.835457	1139.65636	-0.13843	-7.9021E-05	0.9221	0.00052637	0.78367	0.00044735	571.3368266805428	71.161	1.7752	71.161	70.597	72.372	0					46	34	2	0	0	0	0.69504	1	26185	26185		18.135	18.135	1	6965000			60003	2859	43765	44113	58454	58454					0.09211935591042675
VQPRPAAR	8	Unmodified	_VQPRPAAR_					0	0	0			REV__ENST00000283033.9_1_16:11830020-11836389:-|nuORF	REV__ENST00000283033.9_1_16:11830020-11836389:-|nuORF	MSMS	A375_MHC_IP_R2	2	447.7467346191406	2	447.767043	893.519533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.732	1	23.362	22.862	23.862	0.63014								0	0	0	0.16876	1	7238	7238		2.5775	0	1		+		60004	23327	43766	44114	58455	58455					0.06851446431312525
VQPSSHSP	8	Unmodified	_VQPSSHSP_					0	0	0			REV__ENST00000546536.5_1_14:105957646-105963882:+|nuORF	REV__ENST00000546536.5_1_14:105957646-105963882:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	838.5687866210938	1	838.405357	837.398081	-0.24651	-0.00020668	-1.772	-0.0014856	-2.0185	-0.0016923	838.4037897942147	96.983	0.20314	96.983	96.833	97.036	0					5	3	2	0	0	0	0.972	1	35639	35639		7.9102	5.6074	1	1011600	+		60005	26001	43767	44115	58456	58456					-0.027122207218440053
VQPTQPWVDP	10	Unmodified	_VQPTQPWVDP_					0	0	0		nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-SECPEP	A375_MHC_IP_R1	1	583.1922607421875	2	583.795663	1165.57677	-0.30176	-0.00017616	0.54124	0.00031598	0.23949	0.00013981	583.7961460170412	58.582	0.91254	58.582	57.923	58.836	0					21	17	2	0	0	0	0.6774	1	21062	21062		16.149	0	1	1560600			60006	5027	43768	44116	58457	58457					0.0006082412637624657
VQPVGEVS	8	Unmodified	_VQPVGEVS_					0	0	0			REV__ZNF416|p.D115*|1|0.45|ENSG00000083817|chr19:57573561-57573562|-/A|frameshift_variant	REV__ZNF416|p.D115*|1|0.45|ENSG00000083817|chr19:57573561-57573562|-/A|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	407.62689208984375	2	407.718893	813.423233	-0.0058152	-2.371E-06	0.097305	3.9673E-05	0.091489	3.7302E-05	407.7189383519295	35.565	0.61157	35.565	35.218	35.83	0					18	11	2	0	0	0	0.86263	1	11853	11853		34.102	0	1	916720	+		60007	16813	43769	44117	58458	58458					0.009058340807200693
VQQLIWPVY	9	Unmodified	_VQQLIWPVY_					0	0	0			REV__nc|ENSG00000196364|A6NIE9|PRSS29P	REV__nc|ENSG00000196364|A6NIE9|PRSS29P	MSMS	A375_MHC_IP_R2	2	573.4627075195312	2	573.321317	1144.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.413	1	86.149	85.649	86.649	0.73601								0	0	0	0.15486	1	32471	32471		11.64	2.2572	1		+		60008	27436	43770	44118	58459	58459					0.06155192891083061
VQQLRRRRRPW	11	Unmodified	_VQQLRRRRRPW_					0	0	0			REV__nc|ENSG00000117791|Q969Z3-2|MTARC2	REV__nc|ENSG00000117791|Q969Z3-2|MTARC2	MULTI-MSMS	A375_MHC_IP_R1	1	776.3653564453125	2	775.966191	1549.91783	-0.82107	-0.00063713	-0.09492	-7.3654E-05	-0.91599	-0.00071078	775.9659224662473	143.17	0.70625	143.17	142.74	143.45	0					37	13	4	0	0	0	0.73897	1	54862	54862		0.35063	0	1	5858000	+		60009	18021	43771	44119	58460	58460					0.16486735010607845
VQQLRRRRRPW	11	Unmodified	_VQQLRRRRRPW_					0	0	0			REV__nc|ENSG00000117791|Q969Z3-2|MTARC2	REV__nc|ENSG00000117791|Q969Z3-2|MTARC2	MULTI-MSMS	A375_MHC_IP_R2	2	776.365234375	2	775.966191	1549.91783	-0.76228	-0.0005915	-0.073969	-5.7397E-05	-0.83625	-0.0006489	775.9661133438009	143.18	0.70848	143.21	142.79	143.5	0.030731					40	13	4	0	0	0	0.73897	2	55949	55949;56062		0.35063	0	1	6022600	+		60010	18021	43771	44119	58461;58462	58461					0.16486735010607845
VQQLRRRRRPW	11	Unmodified	_VQQLRRRRRPW_					0	0	0			REV__nc|ENSG00000117791|Q969Z3-2|MTARC2	REV__nc|ENSG00000117791|Q969Z3-2|MTARC2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	775.966191	1549.91783	-0.76228	-0.0005915	-0.073969	-5.7397E-05	-0.83625	-0.0006489	775.9661133438009	143.18	0.70848	143.21	142.79	143.5	0.030731	0.021957	1.8372E-05	NaN	0.35063	40	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6022600	+		60011	18021	43771	44119							0.16486735010607845
VQQLRYIL	8	Unmodified	_VQQLRYIL_					0	0	0		ENSG00000108733|ENST00000225873|PEX12	ENSG00000108733|ENST00000225873|PEX12	ENSG00000108733|ENST00000225873|PEX12	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1458129882812	2	516.813659	1031.61277	-0.3786	-0.00019567	-0.30301	-0.0001566	-0.68161	-0.00035227	516.8134880419406	43.326	0.40736	43.326	43.095	43.502	0					12	7	2	0	0	0	0.93416	1	14987	14987		9.3474	0	1	2222700			60012	2831	43772	44120	58463	58463					0.09822326093899392
VQQLTVKHG	9	Unmodified	_VQQLTVKHG_					0	0	0		ENSG00000163781|ENST00000260810|TOPBP1;ENST00000511439.5_1_3:133368770-133375581:-|nuORF;TOPBP1|p.I242Pfs*22|1|0.23|ENSG00000163781|chr3:133655309-133655310|-/GA|frameshift_variant	ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	MULTI-SECPEP	A375_MHC_IP_R1	1	505.692626953125	2	505.293091	1008.57163	-0.64738	-0.00032711	-0.097731	-4.9383E-05	-0.74511	-0.0003765	505.2930889386948	26.784	1.0087	26.784	26.575	27.584	0					57	19	5	0	0	0	0.16676	1	7998	7998		49.933	7.8384	1	155280000			60013	6718	43773	44121	58464	58464					0.0676856505442629
VQQLTVKHG	9	Unmodified	_VQQLTVKHG_					0	0	0		ENSG00000163781|ENST00000260810|TOPBP1;ENST00000511439.5_1_3:133368770-133375581:-|nuORF;TOPBP1|p.I242Pfs*22|1|0.23|ENSG00000163781|chr3:133655309-133655310|-/GA|frameshift_variant	ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	505.6920166015625	2	505.293091	1008.57163	-1.1105	-0.00056111	0.13053	6.5954E-05	-0.97994	-0.00049516	505.2931989081151	26.222	0.81287	26.882	26.653	27.466	0.65992					49	15	5	0	0	0	0.16676	1	8813	8813		49.933	25.912	1	185850000			60014	6718	43773	44121	58465	58465					0.0676856505442629
VQQLWDFCV	9	Unmodified	_VQQLWDFCV_					0	0	0		ENST00000558383.1_1_15:45393877-45400429:-|nuORF;nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2	ENST00000558383.1_1_15:45393877-45400429:-|nuORF	ENST00000558383.1_1_15:45393877-45400429:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	569.7166748046875	2	569.273509	1136.53247	-0.17201	-9.792E-05	1.0131	0.00057671	0.84105	0.00047879	569.2740332238343	71.3	0.61414	71.3	70.902	71.516	0					16	11	2	0	0	0	0.43185	1	25883	25883		23.148	3.8914	1	2632200			60015	5135	43774	44122	58466	58466					-0.03033903291475326
VQQQLNHY	8	Unmodified	_VQQQLNHY_					0	0	0		ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;nc|ENSG00000148143|Q96JM2-2|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	MULTI-MSMS	A375_MHC_IP_R1	1	516.1622314453125	2	515.259248	1028.50394	-0.29891	-0.00015402	1.8743	0.00096576	1.5754	0.00081175	515.2592250918349	42.899	0.76342	42.899	42.587	43.351	0					40	14	4	0	0	0	0.64599	1	14876	14876		42.968	14.795	1	5196700			60016	5716	43775	44123	58467	58467					-0.009168848763920323
VQQSLSRWYWC	11	Unmodified	_VQQSLSRWYWC_					0	0	0		ENST00000557584.5_1_14:74417012-74426158:+|nuORF	ENST00000557584.5_1_14:74417012-74426158:+|nuORF	ENST00000557584.5_1_14:74417012-74426158:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	728.7455444335938	2	728.345529	1454.6765	-0.61859	-0.00045055	1.7652	0.0012857	1.1466	0.00083514	728.3462178019444	76.355	0.4551	76.355	76.067	76.522	0					15	8	3	0	0	0	0.9754	1	27861	27861		17.113	5.6182	1	2286600			60017	13454	43776	44124	58468	58468					-0.03264681531322822
VQQSLSRWYWC	11	Unmodified	_VQQSLSRWYWC_					0	0	0		ENST00000557584.5_1_14:74417012-74426158:+|nuORF	ENST00000557584.5_1_14:74417012-74426158:+|nuORF	ENST00000557584.5_1_14:74417012-74426158:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	728.345529	1454.6765	-0.79938	-0.00058223	1.0836	0.00078925	0.28424	0.00020703	728.8476463971585	75.67	0.51001	76.411	76.181	76.691	0.74052	0.028225	-0.00033902	NaN	17.113	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2357600			60018	13454	43776	44124							-0.03264681531322822
VQQYRIIY	8	Unmodified	_VQQYRIIY_					0	0	0		ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	MULTI-SECPEP	A375_MHC_IP_R1	1	541.163818359375	2	541.803291	1081.59203	-0.64586	-0.00034993	1.5217	0.00082446	0.87584	0.00047453	541.8037482992181	61.024	0.40653	61.024	60.821	61.227	0					10	7	2	0	0	0	0.972	1	22041	22041		4.756	0	1	1228300			60019	3030	43777	44125	58469	58469					0.05449735714250892
VQRDKYRY	8	Unmodified	_VQRDKYRY_					0	0	0		ENSG00000147684|ENST00000276689|NDUFB9	ENSG00000147684|ENST00000276689|NDUFB9	ENSG00000147684|ENST00000276689|NDUFB9	MULTI-MSMS	A375_MHC_IP_R1	1	376.57427978515625	3	376.536724	1126.58834	0.35513	0.00013372	-1.6781	-0.00063185	-1.3229	-0.00049813	376.5361359764361	20.086	0.60866	20.086	19.776	20.384	0					15	11	2	0	0	0	0.77374	1	5007	5007		13.906	1.6785	1	1471300			60020	5701	43778	44126	58470	58470					0.030110659403817408
VQRHRVSLSY	10	Unmodified	_VQRHRVSLSY_					0	0	0			REV__nc|ENSG00000155926|Q13239-2|SLA	REV__nc|ENSG00000155926|Q13239-2|SLA	MULTI-MSMS	A375_MHC_IP_R2	2	415.9468078613281	3	415.566794	1243.67855	-0.028985	-1.2045E-05	0.47439	0.00019714	0.4454	0.00018509	415.5669325865497	31.879	0.45585	32.616	32.35	32.806	0.73692					20	8	3	0	0	0	0.67901	1	11337	11337		14.957	3.4393	1	4839200	+		60021	19951	43779	44127	58471	58471					0.06646115268813446
VQRHRVSLSY	10	Unmodified	_VQRHRVSLSY_					0	0	0			REV__nc|ENSG00000155926|Q13239-2|SLA	REV__nc|ENSG00000155926|Q13239-2|SLA	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	415.566794	1243.67855	-0.028985	-1.2045E-05	0.47439	0.00019714	0.4454	0.00018509	415.5669325865497	31.879	0.45585	32.616	32.35	32.806	0.73692	-0.06715	0.00043666	NaN	14.957	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4839200	+		60022	19951	43779	44127							0.06646115268813446
VQRLSPLLH	9	Unmodified	_VQRLSPLLH_					0	0	0			REV__ENSG00000182749|ENST00000675840|PAQR7	REV__ENSG00000182749|ENST00000675840|PAQR7	MULTI-MSMS	A375_MHC_IP_R2	2	355.2734069824219	3	354.885464	1061.63456	-0.49536	-0.0001758	0.23484	8.3342E-05	-0.26052	-9.2456E-05	354.8855068801226	49.716	1.0165	50.47	50.142	51.159	0.75406					47	19	4	0	0	0	0.71784	1	18925	18925		5.4027	0	1	38009000	+		60023	21705	43780	44128	58472	58472					0.10621130842469029
VQRPTAWFY	9	Unmodified	_VQRPTAWFY_					0	0	0			REV__ENSG00000109046|ENST00000262394|WSB1	REV__ENSG00000109046|ENST00000262394|WSB1	MSMS	A375_MHC_IP_R2	2	584.3388671875	2	584.300916	1166.58728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.325	1	54.076	53.576	54.576	0.75105								0	0	0	0.15486	1	20120	20120		11.64	0.81637	1		+		60024	17566	43781	44129	58473	58473					0.010648515714592577
VQRPVLGLDGP	11	Unmodified	_VQRPVLGLDGP_					0	0	0			REV__ENSG00000160401|ENST00000373295|CFAP157	REV__ENSG00000160401|ENST00000373295|CFAP157	MULTI-SECPEP	A375_MHC_IP_R2	2	576.2320556640625	2	575.83258	1149.65061	-0.21485	-0.00012372	-0.50756	-0.00029227	-0.7224	-0.00041598	575.8322793179508	32.35	0.61118	33.087	32.806	33.417	0.73692					32	11	4	0	0	0	0.60761	1	11485	11485		36.506	5.2379	1	39426000	+		60025	20168	43782	44130	58474	58474					0.08176792288691104
VQRRLPRTL	9	Unmodified	_VQRRLPRTL_					0	0	0			REV__ENST00000460447.1_1_3:27216299-27233533:-|nuORF	REV__ENST00000460447.1_1_3:27216299-27233533:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	380.6109924316406	3	380.243763	1137.70946	-0.41335	-0.00015717	0.20126	7.6529E-05	-0.21208	-8.0644E-05	380.24382392055537	25.908	0.76205	26.568	26.296	27.058	0.65992					37	14	3	0	0	0	0.75494	1	8884	8884		2.086	0	1	8151200	+		60026	24960	43783	44131	58475	58475					0.14611313373688972
VQRRLRLKDFR	11	Unmodified	_VQRRLRLKDFR_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000565092.6_1_16:1496634-1499128:-|nuORF;ENST00000563642.6_1_16:1496634-1499487:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	A375_MHC_IP_R1	1	744.3565673828125	2	743.957501	1485.90045	-0.88217	-0.0006563	-0.51076	-0.00037998	-1.3929	-0.0010363	743.9569312434733	148.96	2.4189	148.96	147.52	149.94	0					231	90	4	0	0	0	0.73934	2	56488	56488;57070		0	0	1	2755000			60027	2435	43784	44132	58476;58477	58476					0.1769339468492035
VQRRPGGD	8	Unmodified	_VQRRPGGD_					0	0	0		ENSG00000102763|ENST00000379310|VWA8;nc|ENSG00000102763|A3KMH1-2|VWA8	ENSG00000102763|ENST00000379310|VWA8	ENSG00000102763|ENST00000379310|VWA8	MSMS	A375_MHC_IP_R2	2	442.6813659667969	2	442.738483	883.462413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.701	1	61.446	60.946	61.946	0.74503								0	0	0	0.16876	1	22988	22988		13.508	0	1				60028	2391	43785	44133	58478	58478					0.01601979154941091
VQRYEPTV	8	Unmodified	_VQRYEPTV_					0	0	0			REV__ENST00000368194.7_1_1:156955959-157014261:-|nuORF	REV__ENST00000368194.7_1_1:156955959-157014261:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	496.66351318359375	2	496.263999	990.513445	-0.40602	-0.0002015	-0.3596	-0.00017845	-0.76562	-0.00037995	496.26384763213196	40.85	0.3527	40.85	40.66	41.013	0					11	6	2	0	0	0	0.77651	1	14118	14118		42.095	6.0504	1	2811900	+		60029	23988	43786	44134	58479	58479					0.017808834091511017
VQSDCEDPLAH	11	Unmodified	_VQSDCEDPLAH_					0	0	0			REV__ENST00000307768.4_1_3:9932249-9934613:+|nuORF	REV__ENST00000307768.4_1_3:9932249-9934613:+|nuORF	MSMS	A375_MHC_IP_R1	1	607.6644287109375	2	607.261327	1212.5081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.78	1	121.78	121.28	122.28	0								0	0	0	0.16213	1	45254	45254		7.609	0.31972	1		+		60030	23477	43787	44135	58480	58480					-0.08965208235622413
VQSDLLHKY	9	Unmodified	_VQSDLLHKY_					0	0	0		ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	MULTI-SECPEP	A375_MHC_IP_R2	2	368.600830078125	3	368.201229	1101.58186	0.11213	4.1287E-05	-0.4008	-0.00014758	-0.28867	-0.00010629	368.2010258470169	33.022	0.30674	33.762	33.572	33.879	0.7402					16	5	4	0	0	0	0.78351	1	11826	11826		3.3196	1.5774	1	3471000			60031	2990	43788	44136	58481	58481					0.03513127989003806
VQSEANLYD	9	Unmodified	_VQSEANLYD_					0	0	0			REV__ENST00000428867.1_1_7:45797631-45798728:-|nuORF	REV__ENST00000428867.1_1_7:45797631-45798728:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	520.6591796875	2	519.740554	1037.46655	-0.48135	-0.00025018	-0.26827	-0.00013943	-0.74962	-0.00038961	519.7403963909541	46.825	1.0684	47.586	47.258	48.326	0.76128					38	20	3	0	0	0	0.70886	1	17834	17834		6.2058	0	1	10317000	+		60032	24381	43789	44137	58482	58482					-0.050680209326628756
VQSEIVCKRRL	11	Unmodified	_VQSEIVCKRRL_					0	0	0			REV__ENST00000380818.7_1_5:68662392-68665513:-|nuORF	REV__ENST00000380818.7_1_5:68662392-68665513:-|nuORF	MSMS	A375_MHC_IP_R1	1	444.65875244140625	3	444.258973	1329.75509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.56	1	142.56	142.06	143.06	0								0	0	0	0.16337	1	54700	54700		0.40827	0	1		+		60033	24223	43790	44138	58483	58483					0.10340170773770296
VQSIRPPY	8	Unmodified	_VQSIRPPY_					0	0	0		nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENSG00000124151|ENST00000371998|NCOA3	nc|ENSG00000124151|Q9Y6Q9-2|NCOA3	nc|ENSG00000124151|Q9Y6Q9-2|NCOA3	MULTI-SECPEP	A375_MHC_IP_R1	1	480.65228271484375	2	480.269084	958.523616	-0.33882	-0.00016272	0.10428	5.0082E-05	-0.23454	-0.00011264	480.2690939692881	40.439	0.76255	40.439	40.1	40.863	0					31	14	3	0	0	0	0.26691	1	13874	13874		68.081	32.037	1	4545200			60034	3873	43791	44139	58484	58484					0.042694911343687636
VQSIRPPY	8	Unmodified	_VQSIRPPY_					0	0	0		nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENSG00000124151|ENST00000371998|NCOA3	nc|ENSG00000124151|Q9Y6Q9-2|NCOA3	nc|ENSG00000124151|Q9Y6Q9-2|NCOA3	MULTI-SECPEP	A375_MHC_IP_R2	2	480.6522216796875	2	480.269084	958.523616	-0.61338	-0.00029459	0.85105	0.00040873	0.23767	0.00011414	480.2695546135973	39.673	1.2214	40.447	39.708	40.93	0.77451					44	23	3	0	0	0	0.26691	1	14583	14583		68.081	24.222	1	5249700			60035	3873	43791	44139	58485	58485					0.042694911343687636
VQSLIRGSK	9	Unmodified	_VQSLIRGSK_					0	0	0			REV__ENSG00000152270|ENST00000282096|PDE3B	REV__ENSG00000152270|ENST00000282096|PDE3B	MULTI-MSMS	A375_MHC_IP_R1	1	494.70025634765625	2	494.300916	986.587279	-0.60062	-0.00029689	-0.43613	-0.00021558	-1.0368	-0.00051247	494.3004142719652	131.86	1.4195	131.86	131.58	133	0					74	27	5	0	0	0	0.69674	1	50821	50821		7.2892	0	1	97767000	+		60036	19799	43792	44140	58486	58486					0.09344851571472645
VQSNGDWEY	9	Unmodified	_VQSNGDWEY_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	A375_MHC_IP_R1	1	549.7864379882812	2	549.230353	1096.44615	-0.19516	-0.00010719	-0.78048	-0.00042866	-0.97564	-0.00053585	549.2301642920747	112.66	0.30666	112.66	112.38	112.69	0					7	5	2	0	0	0	0.69674	1	41288	41288		7.2892	2.5332	1	1109000	+		60037	22555	43793	44141	58487	58487					-0.098211915924594
VQSNSDQKL	9	Unmodified	_VQSNSDQKL_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-5|UBR4	REV__nc|ENSG00000127481|Q5T4S7-5|UBR4	MULTI-SECPEP	A375_MHC_IP_R2	2	509.20233154296875	2	509.76182	1017.50909	-0.7365	-0.00037544	-0.76935	-0.00039218	-1.5059	-0.00076763	510.2609827921964	78.058	0.30677	78.801	78.52	78.827	0.74293					6	5	2	0	0	0	0.47368	1	29588	29588		20.454	0	1	537910	+		60038	27212	43794	44142	58488	58488					0.001033741955552614
VQSPDGHRLY	10	Unmodified	_VQSPDGHRLY_					0	0	0		nc|ENSG00000198183|Q9NP55-2|BPIFA1;ENSG00000198183|ENST00000354297|BPIFA1	nc|ENSG00000198183|Q9NP55-2|BPIFA1	nc|ENSG00000198183|Q9NP55-2|BPIFA1	MSMS	A375_MHC_IP_R1	1	586.2111206054688	2	586.296362	1170.57817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.518	1	71.518	71.018	72.018	0								0	0	0	0.1524	1	25990	25990		13.042	0	1				60039	9238	43795	44143	58489	58489					-0.000295417848519719
VQSPKAPSG	9	Unmodified	_VQSPKAPSG_					0	0	0			REV__nc|ENSG00000011566|Q8IVH8-3|MAP4K3	REV__nc|ENSG00000011566|Q8IVH8-3|MAP4K3	MULTI-MSMS	A375_MHC_IP_R2	2	436.1371154785156	2	435.737617	869.460681	-0.60954	-0.0002656	0.054445	2.3724E-05	-0.5551	-0.00024188	435.73758316544365	34.211	1.0139	34.963	34.702	35.716	0.75225					45	19	3	0	0	0	0.070818	1	12283	12283		56.177	12.405	1	63831000	+		60040	16215	43796	44144	58490	58490					0.020729253463287023
VQSPTPAGL	9	Unmodified	_VQSPTPAGL_					0	0	0		ENST00000368705.2_1_1:153581399-153581453:-|nuORF	ENST00000368705.2_1_1:153581399-153581453:-|nuORF	ENST00000368705.2_1_1:153581399-153581453:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	435.2819519042969	2	435.239993	868.465432	-0.2004	-8.7221E-05	0.34792	0.00015143	0.14752	6.4208E-05	435.24016999735295	52.407	0.50688	52.407	52.136	52.643	0					13	9	2	0	0	0	0.070818	2	18669	18651;18669		56.177	3.9087	1	1943300			60041	11121	43797	44145	58491;58492	58492					0.025938094890989305
VQSRRCYQ	8	Unmodified	_VQSRRCYQ_					0	0	0		ENST00000322209.4_2_1:145139171-145139213:-|nuORF	ENST00000322209.4_2_1:145139171-145139213:-|nuORF	ENST00000322209.4_2_1:145139171-145139213:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	520.6588134765625	2	520.258725	1038.5029	-0.15201	-7.9085E-05	0.95935	0.00049911	0.80734	0.00042003	520.2590522688689	48.314	0.45525	48.314	48.122	48.577	0					17	8	3	0	0	0	0.76654	1	17053	17053		15.847	1.0089	1	5741800			60042	10703	43798	44146	58493	58493					-0.014814225169629935
VQSSNSFAY	9	Unmodified	_VQSSNSFAY_					0	0	0			REV__ENSG00000132746|ENST00000673966|ALDH3B2	REV__ENSG00000132746|ENST00000673966|ALDH3B2	MULTI-MSMS	A375_MHC_IP_R1	1	502.17169189453125	2	501.729989	1001.44543	-0.53682	-0.00026934	-1.096	-0.00054988	-1.6328	-0.00081922	501.72953249671417	41.023	0.45339	41.023	40.813	41.266	0					14	8	2	0	0	0	0.53367	1	14097	14097		18.146	1.2041	1	2587400	+		60043	18676	43799	44147	58494	58494					-0.05523986241530565
VQSSNSFAY	9	Unmodified	_VQSSNSFAY_					0	0	0			REV__ENSG00000132746|ENST00000673966|ALDH3B2	REV__ENSG00000132746|ENST00000673966|ALDH3B2	MULTI-SECPEP	A375_MHC_IP_R1	1	502.17169189453125	2	501.729989	1001.44543	-0.53682	-0.00026934	-1.096	-0.00054988	-1.6328	-0.00081922	501.72953249671417	41.023	0.45339	41.023	40.813	41.266	0					14	8	2	0	0	0	0.71341	1	14097	14097		18.146	1.2041	1	2587400	+		60044	18676	43799	44147	58495	58495					-0.05523986241530565
VQSVPINNGPL	11	Unmodified	_VQSVPINNGPL_					0	0	0		ENSG00000164142|ENST00000435205|FHIP1A	ENSG00000164142|ENST00000435205|FHIP1A	ENSG00000164142|ENST00000435205|FHIP1A	MULTI-SECPEP	A375_MHC_IP_R2	2	569.7164306640625	2	569.316763	1136.61897	-0.33175	-0.00018887	-0.39502	-0.00022489	-0.72677	-0.00041376	569.3164347715727	70.627	0.45466	71.361	71.099	71.553	0.73421					22	8	3	0	0	0	0.47836	1	26747	26747		49.554	21.06	1	12637000			60045	6789	43800	44148	58496	58496					0.056127995347424076
VQTDLHLP	8	Unmodified	_VQTDLHLP_					0	0	0			REV__ENSG00000123572|ENST00000243300|NRK	REV__ENSG00000123572|ENST00000243300|NRK	MULTI-SECPEP	A375_MHC_IP_R1	1	461.3014221191406	2	461.753267	921.491981	-0.12265	-5.6636E-05	-0.80348	-0.00037101	-0.92613	-0.00042764	461.75323307425793	45.949	0.50769	45.949	45.687	46.195	0					13	9	2	0	0	0	0.972	1	16162	16162		8.5933	0.68312	1	1143600	+		60046	18249	43801	44149	58497	58497					0.028094983804294316
VQTEVNREL	9	Unmodified	_VQTEVNREL_					0	0	0		ENSG00000117475|ENST00000367808|BLZF1	ENSG00000117475|ENST00000367808|BLZF1	ENSG00000117475|ENST00000367808|BLZF1	MULTI-MSMS	A375_MHC_IP_R1	1	544.6903686523438	2	544.290745	1086.56694	-0.90691	-0.00049362	0.084345	4.5908E-05	-0.82256	-0.00044771	544.2907350040156	30.099	0.55353	30.099	29.798	30.351	0					21	10	3	0	0	0	0.0064781	1	9517	9517		132.38	42.979	1	15521000			60047	3486	43802	44150	58498	58498					0.027116361209891693
VQTEVNREL	9	Unmodified	_VQTEVNREL_					0	0	0		ENSG00000117475|ENST00000367808|BLZF1	ENSG00000117475|ENST00000367808|BLZF1	ENSG00000117475|ENST00000367808|BLZF1	MULTI-SECPEP	A375_MHC_IP_R2	2	544.68994140625	2	544.290745	1086.56694	-1.566	-0.00085237	0.38124	0.0002075	-1.1848	-0.00064487	544.290916904616	29.41	0.45462	30.109	29.93	30.385	0.69872					23	8	3	0	0	0	0.053555	1	10258	10258		71.708	45.44	1	18708000			60048	3486	43802	44150	58499	58499					0.027116361209891693
VQTHRSKKY	9	Unmodified	_VQTHRSKKY_					0	0	0		ENSG00000170949|ENST00000683776|ZNF160;ZNF160|p.F481Sfs*44|1|0.2|ENSG00000170949|chr19:53069092-53069092|A/-|frameshift_variant;ZNF160|p.H236Y|1|0.37|ENSG00000170949|chr19:53069828-53069828|G/A|missense_variant	ENSG00000170949|ENST00000683776|ZNF160	ENSG00000170949|ENST00000683776|ZNF160	MULTI-SECPEP	A375_MHC_IP_R2	2	383.27642822265625	3	382.884123	1145.63054	-0.42261	-0.00016181	2.7558	0.0010551	2.3332	0.00089334	382.88519111268056	24.441	0.15205	25.085	25.009	25.161	0.64368					4	2	2	0	0	0	0.75214	1	8029	8029		15.739	6.1946	1	4535800			60049	7562	43803	44151	58500	58500					0.06355041348751911
VQTIVKWHLTM	11	Unmodified	_VQTIVKWHLTM_					0	0	0			REV__ENST00000563629.1_1_16:50785629-50785707:+|nuORF	REV__ENST00000563629.1_1_16:50785629-50785707:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	452.6426086425781	3	452.588319	1354.74313	-0.1975	-8.9387E-05	1.6462	0.00074504	1.4487	0.00065566	452.5889532586009	57.746	0.3054	57.746	57.618	57.923	0					8	5	2	0	0	0	0.71476	1	20727	20727		8.2864	3.8803	1	1793400	+		60050	26209	43804	44152	58501	58501					0.07994554030551626
VQTKRMVTV	9	Unmodified	_VQTKRMVTV_					0	0	0			REV__ENST00000242505.10_1_10:74934515-74952389:+|nuORF	REV__ENST00000242505.10_1_10:74934515-74952389:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	531.4230346679688	2	531.310426	1060.6063	-0.65918	-0.00035023	3.9921	0.0021211	3.333	0.0017708	531.313710553136	82.729	0.25144	83.472	83.246	83.497	0.74293					5	4	2	0	0	0	0.58271	1	31402	31402		26.884	8.7373	1	481520	+		60051	23099	43805	44153	58502	58502					0.07842064870851573
VQTWSLLTGAE	11	Unmodified	_VQTWSLLTGAE_					0	0	0			REV__ENST00000575722.1_1_18:76737246-76737315:-|nuORF	REV__ENST00000575722.1_1_18:76737246-76737315:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	402.5798645019531	3	402.211794	1203.61355	-0.0028337	-1.1397E-06	0.92379	0.00037156	0.92096	0.00037042	402.21206727648666	45.376	1.8794	45.376	43.909	45.789	0					41	36	2	0	0	0	0.73195	1	15826	15826		7.0371	0.41363	1	1955000	+		60052	26308	43806	44154	58503	58503					0.019890759522922963
VQVAGKAER	9	Unmodified	_VQVAGKAER_					0	0	0		nc|ENSG00000047648|O43182-4|ARHGAP6;ENSG00000047648|ENST00000337414|ARHGAP6;ENST00000489330.6_1_X:11156985-11160533:-|nuORF	nc|ENSG00000047648|O43182-4|ARHGAP6	nc|ENSG00000047648|O43182-4|ARHGAP6	MULTI-MSMS	A375_MHC_IP_R2	2	479.67706298828125	2	479.277441	956.540328	-0.36367	-0.0001743	-0.0040912	-1.9608E-06	-0.36776	-0.00017626	479.2773251011022	115.33	5.995	116.02	113.03	119.03	0.68999					294	117	3	0	0	0	0.70886	2	42676	42676;43728		6.2058	0	1	60713000			60053	1206	43807	44155	58504;58505	58504					0.06031992020314192
VQVDKAVW	8	Unmodified	_VQVDKAVW_					0	0	0			REV__ENSG00000158486|ENST00000698260|DNAH3	REV__ENSG00000158486|ENST00000698260|DNAH3	MULTI-SECPEP	A375_MHC_IP_R1	1	472.683349609375	2	472.763635	943.512717	-0.69229	-0.00032729	0.27885	0.00013183	-0.41343	-0.00019546	472.763693686854	133.07	0.20422	133.07	132.95	133.15	0					5	3	2	0	0	0	0.972	1	51315	51315		4.756	2.4533	1	2985200	+		60054	20079	43808	44156	58506	58506					0.03870088760083945
VQVEIPKSLI	10	Unmodified	_VQVEIPKSLI_					0	0	0			REV__nc|ENSG00000145833|Q7L014|DDX46	REV__nc|ENSG00000145833|Q7L014|DDX46	MSMS	A375_MHC_IP_R1	1	375.9174499511719	3	375.90078	1124.68051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.874	1	19.874	19.374	20.374	0								0	0	0	0.15479	1	5020	5020		2.8433	0	1		+		60055	19496	43809	44157	58507	58507					0.12315731234048144
VQVHSQCRDP	10	Unmodified	_VQVHSQCRDP_					0	0	0		ENST00000541477.5_1_12:7030786-7030828:+|nuORF	ENST00000541477.5_1_12:7030786-7030828:+|nuORF	ENST00000541477.5_1_12:7030786-7030828:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	390.9642028808594	3	390.189107	1167.54549	-0.45535	-0.00017767	-0.924	-0.00036053	-1.3793	-0.00053821	390.18867416301816	28.23	0.35429	28.909	28.706	29.06	0.67857					11	6	2	0	0	0	0.92227	1	9769	9769		2.8433	0.10809	1	2212500			60056	13285	43810	44158	58508	58508					-0.03158072179371629
VQVIQQALHR	10	Unmodified	_VQVIQQALHR_					0	0	0		ENSG00000134686|ENST00000683057|PHC2;nc|ENSG00000134686|Q8IXK0-4|PHC2;nc|ENSG00000134686|Q8IXK0|PHC2;nc|ENSG00000173889|Q8NDX5-2|PHC3;nc|ENSG00000173889|Q8NDX5|PHC3;ENSG00000173889|ENST00000495893|PHC3;nc|ENSG00000173889|Q8NDX5-5|PHC3;nc|ENSG00000173889|Q8NDX5-3|PHC3	ENSG00000134686|ENST00000683057|PHC2	ENSG00000134686|ENST00000683057|PHC2	MULTI-SECPEP	A375_MHC_IP_R1	1	596.4242553710938	2	596.351471	1190.68839	-0.64739	-0.00038607	-1.36	-0.00081106	-2.0074	-0.0011971	596.3510512981634	132.33	0.3017	132.33	132.13	132.44	0					11	5	3	0	0	0	0.94516	1	50986	50986		1.4819	0	1	2440900			60057	4595	43811	44159	58509	58509					0.10067303274149708
VQVLYWEP	8	Unmodified	_VQVLYWEP_					0	0	0			REV__RINT1|p.A338V|1|0.26|ENSG00000135249|chr7:105550071-105550071|C/T|missense_variant	REV__RINT1|p.A338V|1|0.26|ENSG00000135249|chr7:105550071-105550071|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	517.6702880859375	2	517.271293	1032.52803	-0.6717	-0.00034745	-0.55231	-0.00028569	-1.224	-0.00063314	517.2709132700971	23.334	0.91415	23.334	22.823	23.737	0					29	17	3	0	0	0	0.7338	1	6365	6365		24.674	0.65332	1	4899500	+		60058	27888	43812	44160	58510	58510					0.0130695555726561
VQVLYWEP	8	Unmodified	_VQVLYWEP_					0	0	0			REV__RINT1|p.A338V|1|0.26|ENSG00000135249|chr7:105550071-105550071|C/T|missense_variant	REV__RINT1|p.A338V|1|0.26|ENSG00000135249|chr7:105550071-105550071|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	516.671630859375	2	517.271293	1032.52803	-0.6717	-0.00034745	-0.55231	-0.00028569	-1.224	-0.00063314	517.2709132700971	23.334	0.91415	23.334	22.823	23.737	0					29	17	3	0	0	0	0.95423	1	6295	6295		12.532	3.7861	1	4899500	+		60059	27888	43812	44160	58511	58511					0.0130695555726561
VQVLYWEP	8	Unmodified	_VQVLYWEP_					0	0	0			REV__RINT1|p.A338V|1|0.26|ENSG00000135249|chr7:105550071-105550071|C/T|missense_variant	REV__RINT1|p.A338V|1|0.26|ENSG00000135249|chr7:105550071-105550071|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	517.6703491210938	2	517.271293	1032.52803	-1.092	-0.00056484	-0.72899	-0.00037708	-1.821	-0.00094193	517.2708795375462	22.877	0.76497	23.507	23.113	23.878	0.63014					22	14	3	0	0	0	0.7338	1	7279	7279		24.674	4.2594	1	3121500	+		60060	27888	43812	44160	58512	58512					0.0130695555726561
VQVNAVKF	8	Unmodified	_VQVNAVKF_					0	0	0		ENSG00000048707|ENST00000620676|VPS13D;nc|ENSG00000048707|Q5THJ4-2|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	MULTI-SECPEP	A375_MHC_IP_R2	2	453.1503601074219	2	452.766178	903.517802	-0.42923	-0.00019434	-0.10234	-4.6338E-05	-0.53158	-0.00024068	452.7659921984422	72.35	0.45555	73.086	72.771	73.226	0.73541					11	8	2	0	0	0	0.94479	1	27401	27401		13.508	4.9146	1	900580			60061	1216	43813	44161	58513	58513					0.06218392622713509
VQVNAVKF	8	Unmodified	_VQVNAVKF_					0	0	0		ENSG00000048707|ENST00000620676|VPS13D;nc|ENSG00000048707|Q5THJ4-2|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	ENSG00000048707|ENST00000620676|VPS13D	MULTI-MATCH	A375_MHC_IP_R1	1		2	452.766178	903.517802	-0.19216	-8.7005E-05	0.17331	7.8468E-05	-0.018855	-8.5371E-06	452.7663742520101	73.327	0.45728	73.327	73.082	73.539	0	0.12067	0.00010695	NaN	13.508	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	931800			60062	1216	43813	44161							0.06218392622713509
VQVPGPKS	8	Unmodified	_VQVPGPKS_					0	0	0			REV__ENSG00000184743|ENST00000398868|ATL3	REV__ENSG00000184743|ENST00000398868|ATL3	MULTI-MSMS	A375_MHC_IP_R2	2	406.6374206542969	2	406.237253	810.459953	0.20505	8.3298E-05	0.83786	0.00034037	1.0429	0.00042367	406.2375009121344	143.57	0.30103	143.6	143.44	143.74	0.024414					9	5	2	0	0	0	0.77797	1	56112	56112		2.3027	0	1	2185000	+		60063	21838	43814	44162	58514	58514					0.047141306972775965
VQVPGPKS	8	Unmodified	_VQVPGPKS_					0	0	0			REV__ENSG00000184743|ENST00000398868|ATL3	REV__ENSG00000184743|ENST00000398868|ATL3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	406.237253	810.459953	-0.67447	-0.000274	1.5568	0.00063245	0.88237	0.00035845	406.2378261508321	143.55	0.23782	143.55	143.45	143.68	0	-0.022582	0.00020116	NaN	2.3027	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2302900	+		60064	21838	43814	44162							0.047141306972775965
VQVPGPKS	8	Unmodified	_VQVPGPKS_					0	0	0			REV__ENSG00000184743|ENST00000398868|ATL3	REV__ENSG00000184743|ENST00000398868|ATL3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	406.237253	810.459953	0.20505	8.3298E-05	0.83786	0.00034037	1.0429	0.00042367	406.2375009121344	143.57	0.30103	143.6	143.44	143.74	0.024414	0.022582	-0.00038299	NaN	2.3027	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2185000	+		60065	21838	43814	44162							0.047141306972775965
VQVPRLQVL	9	Unmodified	_VQVPRLQVL_					0	0	0		ENST00000429927.6_2_4:76555598-76555745:-|nuORF	ENST00000429927.6_2_4:76555598-76555745:-|nuORF	ENST00000429927.6_2_4:76555598-76555745:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	526.7339477539062	2	526.334759	1050.65496	-0.83963	-0.00044193	-0.039777	-2.0936E-05	-0.87941	-0.00046286	526.3345998930336	149.77	1.6889	149.77	148.31	150	0					178	56	4	0	0	0	0.7724	1	57136	57136		0.52476	0	1	982130			60066	11849	43815	44163	58515	58515					0.13166301502246824
VQVPSCPVRRS	11	Unmodified	_VQVPSCPVRRS_					0	0	0			REV__ENST00000393596.2_1_11:72929635-72945230:+|nuORF	REV__ENST00000393596.2_1_11:72929635-72945230:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	410.6267395019531	3	409.892401	1226.65538	0.019027	7.7991E-06	-0.063355	-2.5969E-05	-0.044328	-1.817E-05	410.22671374144295	50.884	0.40483	50.884	50.663	51.068	0					16	7	3	0	0	0	0.73078	1	18082	18082		4.1166	0.79699	1	2626800	+		60067	23506	43816	44164	58516	58516					0.051113531598275586
VQVPSCPVRRS	11	Unmodified	_VQVPSCPVRRS_					0	0	0			REV__ENST00000393596.2_1_11:72929635-72945230:+|nuORF	REV__ENST00000393596.2_1_11:72929635-72945230:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	409.892401	1226.65538	-0.19371	-7.9402E-05	-0.014598	-5.9838E-06	-0.20831	-8.5385E-05	409.89233752087466	50.1	0.55906	50.854	50.65	51.209	0.75406	-0.015029	2.9551E-05	NaN	4.1166	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1546900	+		60068	23506	43816	44164							0.051113531598275586
VQVRAHPK	8	Unmodified	_VQVRAHPK_					0	0	0		ENST00000603137.1_1_2:28238673-28239105:-|nuORF	ENST00000603137.1_1_2:28238673-28239105:-|nuORF	ENST00000603137.1_1_2:28238673-28239105:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	934.95703125	1	934.55811	933.550834	-0.38413	-0.00035899	-0.23171	-0.00021655	-0.61584	-0.00057554	934.5576532165876	143.66	0.44394	143.66	143.54	143.98	0					9	8	2	0	0	0	0.77839	1	55120	55120		0.79363	0	1	2698400			60069	13894	43817	44165	58517	58517					0.08140019465406567
VQVRAHPK	8	Unmodified	_VQVRAHPK_					0	0	0		ENST00000603137.1_1_2:28238673-28239105:-|nuORF	ENST00000603137.1_1_2:28238673-28239105:-|nuORF	ENST00000603137.1_1_2:28238673-28239105:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	934.55811	933.550834	-0.058015	-5.4218E-05	0.031186	2.9145E-05	-0.026828	-2.5073E-05	934.5578231711237	143.69	0.20415	143.71	143.59	143.79	0.024414	0.028681	0.00015693	NaN	0.79363	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3196900			60070	13894	43817	44165							0.08140019465406567
VQVRSLLRNVF	11	Unmodified	_VQVRSLLRNVF_					0	0	0		ENST00000490652.1_1_1:23664940-23670745:-|nuORF	ENST00000490652.1_1_1:23664940-23670745:-|nuORF	ENST00000490652.1_1_1:23664940-23670745:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	666.0042724609375	2	665.901328	1329.7881	-0.62879	-0.00041871	-0.82211	-0.00054745	-1.4509	-0.00096615	665.9007125679924	143.09	1.2191	143.12	142.23	143.45	0.030731					70	23	5	0	0	0	0.7362	1	55832	55832		2.9952	1.6657	1	18267000			60071	12647	43818	44166	58518	58518					0.13640120888112506
VQVRSLLRNVF	11	Unmodified	_VQVRSLLRNVF_					0	0	0		ENST00000490652.1_1_1:23664940-23670745:-|nuORF	ENST00000490652.1_1_1:23664940-23670745:-|nuORF	ENST00000490652.1_1_1:23664940-23670745:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	665.901328	1329.7881	-0.92067	-0.00061307	-0.81671	-0.00054385	-1.7374	-0.0011569	665.900691722092	143.04	0.85809	143.04	142.54	143.39	0	-0.03645	1.8361E-06	NaN	2.9952	59	16	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14113000			60072	12647	43818	44166							0.13640120888112506
VQVRTLWG	8	Unmodified	_VQVRTLWG_					0	0	0		ENST00000493026.2_1_17:30804487-30806484:+|nuORF	ENST00000493026.2_1_17:30804487-30806484:+|nuORF	ENST00000493026.2_1_17:30804487-30806484:+|nuORF	MSMS	A375_MHC_IP_R1	1	479.67718505859375	2	479.777077	957.5396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.52	1	112.52	112.02	113.02	0								0	0	0	0.16876	1	41238	41238		2.5775	0.27475	1				60073	12677	43819	44167	58519	58519					0.059131973712851504
VQVSLSQLIKL	11	Unmodified	_VQVSLSQLIKL_					0	0	0			REV__ENST00000314574.4_1_18:756739-756775:-|nuORF	REV__ENST00000314574.4_1_18:756739-756775:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	614.787353515625	2	614.387188	1226.75982	-0.69427	-0.00042655	0.026496	1.6279E-05	-0.66778	-0.00041027	614.3870870769123	149.34	2.4004	149.34	147.6	150	0					323	89	5	0	0	0	0.73822	1	56484	56484		1.0715	0.67075	1	7426100	+		60074	23526	43820	44168	58520	58520					0.15551378188183662
VQVTATLRNL	10	Unmodified	_VQVTATLRNL_					0	0	0		nc|ENSG00000118690|Q8NEN0-2|ARMC2;ENSG00000118690|ENST00000392644|ARMC2	nc|ENSG00000118690|Q8NEN0-2|ARMC2	nc|ENSG00000118690|Q8NEN0-2|ARMC2	MSMS	A375_MHC_IP_R1	1	557.892822265625	2	557.83258	1113.65061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.099	1	89.099	88.599	89.599	0								0	0	0	0.14804	1	32728	32728		21.537	3.3906	1				60075	3556	43821	44169	58521	58521					0.09832792288693781
VQVYRKKYVI	10	Unmodified	_VQVYRKKYVI_					0	0	0		ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1;ENST00000415894.1_1_1:165788676-165788994:+|nuORF;ENST00000584906.5_1_17:8280884-8283916:-|nuORF	ENSG00000161970|ENST00000648839|RPL26	ENSG00000161970|ENST00000648839|RPL26	MULTI-SECPEP	A375_MHC_IP_R2	2	647.7703247070312	2	648.395348	1294.77614	-0.57176	-0.00037073	-2.5851	-0.0016762	-3.1568	-0.0020469	648.8945309327502	134.84	0.45485	134.98	134.75	135.2	0.13901					12	8	3	0	0	0	0.94897	1	53092	53092		1.4819	1.4819	1	868430			60076	1144	43822	44170	58522	58522					0.14054504144928615
VQWKGALQPL	10	Unmodified	_VQWKGALQPL_					0	0	0			REV__nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5	REV__nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5	MULTI-SECPEP	A375_MHC_IP_R1	1	380.2764587402344	3	380.557236	1138.64988	0.11114	4.2293E-05	2.564	0.00097573	2.6751	0.001018	380.8927310188401	24.048	0.25393	24.048	23.94	24.194	0					6	4	2	0	0	0	0.78945	1	6765	6765		8.4443	0	1	2815300	+		60077	22781	43823	44171	58523	58523					0.08609997639655376
VQWQTGQNGLA	11	Unmodified	_VQWQTGQNGLA_					0	0	0			REV__ENST00000551137.5_1_12:56685565-56694091:-|nuORF	REV__ENST00000551137.5_1_12:56685565-56694091:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	401.59130859375	3	401.203522	1200.58874	-0.050407	-2.0223E-05	0.40971	0.00016438	0.3593	0.00014415	401.2036917054176	30.805	0.35172	31.524	31.367	31.719	0.71857					11	6	2	0	0	0	0.90673	1	10852	10852		11.065	0	1	2217900	+		60078	26042	43824	44172	58524	58524					-0.0035355913041712483
VQWYDQEIREK	11	Unmodified	_VQWYDQEIREK_					0	0	0			REV__ENSG00000183347|ENST00000370456|GBP6	REV__ENSG00000183347|ENST00000370456|GBP6	MULTI-SECPEP	A375_MHC_IP_R1	1	498.9530944824219	3	498.584291	1492.73104	-0.11296	-5.6323E-05	-0.7018	-0.00034991	-0.81476	-0.00040623	498.91819354681166	21.601	0.40576	21.601	21.352	21.757	0					15	7	3	0	0	0	1.0014	1	5747	5747		0.08335	0	1	1526800	+		60079	21751	43825	44173	58525	58525					0.0043860882105946075
VQYNEPLKV	9	Unmodified	_VQYNEPLKV_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-SECPEP	A375_MHC_IP_R1	1	545.7000122070312	2	545.300581	1088.58661	-0.55899	-0.00030482	-0.011433	-6.2347E-06	-0.57042	-0.00031105	545.3005461485368	50.632	0.40702	50.632	50.357	50.764	0					17	7	3	0	0	0	0.16237	1	17937	17937		55.235	28.967	1	3884100			60080	5771	43826	44174	58526	58526					0.0458601213174461
VQYNEPLKV	9	Unmodified	_VQYNEPLKV_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-SECPEP	A375_MHC_IP_R2	2	545.2090454101562	2	545.300581	1088.58661	-1.0566	-0.00057618	0.36787	0.0002006	-0.68875	-0.00037558	545.3008500180869	49.838	0.45955	50.592	50.394	50.854	0.75406					14	8	2	0	0	0	0.30133	1	18800	18800		43.982	21.246	1	4625400			60081	5771	43826	44174	58527	58527					0.0458601213174461
VQYTQDLTD	9	Unmodified	_VQYTQDLTD_					0	0	0		SETDB1|p.G440D|1|0.21|ENSG00000143379|chr1:150949173-150949173|G/A|missense_variant	SETDB1|p.G440D|1|0.21|ENSG00000143379|chr1:150949173-150949173|G/A|missense_variant	SETDB1|p.G440D|1|0.21|ENSG00000143379|chr1:150949173-150949173|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	541.207763671875	2	541.753661	1081.49277	-0.54838	-0.00029708	0.022011	1.1925E-05	-0.52636	-0.00028516	541.7536895927786	81.724	1.2158	81.724	81.253	82.469	0					55	23	4	0	0	0	0.61998	1	29760	29760		13.906	0.39817	1	17632000			60082	29143	43827	44175	58528	58528					-0.04471751761207088
VQYTYEQRLEF	11	Unmodified	_VQYTYEQRLEF_					0	0	0		nc|ENSG00000205221|Q6UXI7-2|VIT;nc|ENSG00000205221|Q6UXI7-5|VIT;nc|ENSG00000205221|Q6UXI7|VIT;ENSG00000205221|ENST00000379242|VIT	nc|ENSG00000205221|Q6UXI7-2|VIT	nc|ENSG00000205221|Q6UXI7-2|VIT	MSMS	A375_MHC_IP_R1	1	492.47735595703125	3	492.577025	1474.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.818	1	35.818	35.318	36.318	0								0	0	0	0.16258	1	11942	11942		2.4348	0	1				60083	9502	43828	44176	58529	58529					-0.009121959275034897
VQYYIVSKY	9	Unmodified	_VQYYIVSKY_					0	0	0			REV__nc|ENSG00000150760|Q14185|DOCK1	REV__nc|ENSG00000150760|Q14185|DOCK1	MULTI-SECPEP	A375_MHC_IP_R2	2	388.955810546875	3	388.209613	1161.60701	-0.40977	-0.00015908	0.35431	0.00013755	-0.055459	-2.153E-05	388.20973431130324	23.829	0.20258	24.459	24.283	24.485	0.63014					5	3	2	0	0	0	0.75466	1	7733	7733		8.1555	0	1	2266500	+		60084	19727	43829	44177	58530	58530					0.032671827915919494
VRAEVEQKL	9	Unmodified	_VRAEVEQKL_					0	0	0		nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	MULTI-MSMS	A375_MHC_IP_R2	2	357.6058654785156	3	357.876746	1070.60841	-0.51965	-0.00018597	-0.23167	-8.2909E-05	-0.75132	-0.00026888	357.87662238201847	23.324	0.30227	23.954	23.777	24.079	0.63014					9	5	2	0	0	0	0.030222	1	7502	7502		74.772	44.068	1	17682000			60085	1309	43830	44178	58531	58531					0.07592816880332975
VRAEVEQKL	9	Unmodified	_VRAEVEQKL_					0	0	0		nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	MULTI-SECPEP	A375_MHC_IP_R2	2	536.711181640625	2	536.31148	1070.60841	-1.1767	-0.00063107	-0.097953	-5.2533E-05	-1.2746	-0.0006836	536.3114476811876	23.328	0.25142	23.958	23.828	24.079	0.63014					11	4	3	0	0	0	0.23894	1	7497	7497		47.594	11.467	1	6250700			60086	1309	43830	44178	58532	58532					0.07592816880332975
VRAEVQHQL	9	Unmodified	_VRAEVQHQL_					0	0	0		nc|ENSG00000038358|Q6P2E9-2|EDC4;ENSG00000038358|ENST00000358933|EDC4;ENST00000572067.1_1_16:67916382-67916877:+|nuORF	nc|ENSG00000038358|Q6P2E9-2|EDC4	nc|ENSG00000038358|Q6P2E9-2|EDC4	MULTI-MSMS	A375_MHC_IP_R2	2	360.93634033203125	3	360.536724	1078.58834	-0.48944	-0.00017646	0.3046	0.00010982	-0.18484	-6.6643E-05	360.5368911183413	19.46	0.60826	20.064	19.834	20.442	0.60326					17	11	2	0	0	0	0.67787	1	6034	6034		8.9762	3.1928	1	1043400			60087	1152	43831	44179	58533	58533					0.05219065940377732
VRAEVQKL	8	Unmodified	_VRAEVQKL_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;EIF4A1|p.T138I|1|0.44|ENSG00000161960|chr17:7576591-7576591|C/T|missense_variant;ENST00000583899.5_1_17:7477924-7480015:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-SECPEP	A375_MHC_IP_R1	1	472.1899108886719	2	471.790184	941.565815	-0.12994	-6.1306E-05	-0.11343	-5.3516E-05	-0.24338	-0.00011482	471.7900176027828	21.709	0.35542	21.709	21.505	21.86	0					14	6	3	0	0	0	0.28442	1	5740	5740		78.728	8.0125	1	3767100			60088	6498;13685	43832	44180	58534	58534					0.0926946654275298
VRAEYIQNI	9	Unmodified	_VRAEYIQNI_					0	0	0			REV__ENST00000570439.1_1_17:7251430-7251541:+|nuORF	REV__ENST00000570439.1_1_17:7251430-7251541:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	368.6327819824219	3	369.204862	1104.59276	0.013286	4.9052E-06	2.2639	0.00083584	2.2772	0.00084075	369.54015466770323	24.106	0.50945	24.75	24.398	24.907	0.64368					13	9	2	0	0	0	0.75466	1	7917	7917		8.1555	4.2111	1	1648700	+		60089	16612	43833	44181	58535	58535					0.04464530363270569
VRAMVRVYL	9	Unmodified	_VRAMVRVYL_					0	0	0		tr|U7SKS6|U7SKS6_FUSNUnon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01920PE=3SV=1	tr|U7SKS6|U7SKS6_FUSNUnon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01920PE=3SV=1	tr|U7SKS6|U7SKS6_FUSNUnon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01920PE=3SV=1	MSMS	A375_MHC_IP_R1	1	553.7373657226562	2	553.828786	1105.64302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.23	1	132.23	131.73	132.73	0								0	0	0	0.15486	1	50984	50984		4.3292	0	1				60090	29481	43834	44182	58536	58536					0.09442361487435846
VRARKEASDKQ	11	Unmodified	_VRARKEASDKQ_					0	0	0			REV__ENSG00000203734|ENST00000541398|ECT2L	REV__ENSG00000203734|ENST00000541398|ECT2L	MULTI-MSMS	A375_MHC_IP_R2	2	644.7592163085938	2	644.360025	1286.7055	-0.72935	-0.00046996	0.8129	0.0005238	0.083552	5.3837E-05	644.3600241664168	129.76	1.4153	129.98	129.19	130.6	0.2142					69	27	3	0	0	0	0.73502	1	50973	50973		2.4985	0	1	29531000	+		60091	22469	43835	44183	58537	58537					0.07361179089321013
VRARKEASDKQ	11	Unmodified	_VRARKEASDKQ_					0	0	0			REV__ENSG00000203734|ENST00000541398|ECT2L	REV__ENSG00000203734|ENST00000541398|ECT2L	MULTI-MSMS	A375_MHC_IP_R2	2	430.30889892578125	3	429.909109	1286.7055	-0.24773	-0.0001065	0.1428	6.139E-05	-0.10494	-4.5113E-05	429.90912316822966	129.7	1.2636	129.91	129.24	130.5	0.21419					43	24	2	0	0	0	0.73698	1	50988	50988		2.2527	0	1	3482000	+		60092	22469	43835	44183	58538	58538					0.07361179089321013
VRARMPAL	8	Unmodified	_VRARMPAL_					0	0	0		FNDC1|p.R594K|1|0.43|ENSG00000164694|chr6:159232293-159232293|G/A|missense_variant;nc|ENSG00000164694|Q4ZHG4-2|FNDC1;ENSG00000164694|ENST00000297267|FNDC1	FNDC1|p.R594K|1|0.43|ENSG00000164694|chr6:159232293-159232293|G/A|missense_variant	FNDC1|p.R594K|1|0.43|ENSG00000164694|chr6:159232293-159232293|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	457.17132568359375	2	457.273647	912.532741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.18	1	129.18	128.68	129.68	0								0	0	0	0.16876	1	49651	49651		2.3027	0	1				60093	6868	43836	44184	58539	58539					0.07297561219047566
VRASIPSL	8	Unmodified	_VRASIPSL_					0	0	0		ENST00000475937.5_1_3:71542611-71592656:-|nuORF;ENST00000471386.2_1_3:71542611-71632881:-|nuORF	ENST00000475937.5_1_3:71542611-71592656:-|nuORF	ENST00000475937.5_1_3:71542611-71592656:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	422.15826416015625	2	421.758352	841.502152	0.10143	4.2777E-05	-0.2189	-9.2323E-05	-0.11748	-4.9546E-05	421.75822253870547	77.972	0.61041	77.972	77.69	78.301	0					19	11	2	0	0	0	0.36021	1	28467	28467		54.774	0	1	3815800			60094	12353	43837	44185	58540	58540					0.0750610610567719
VRCIRLLQL	9	Unmodified	_VRCIRLLQL_					0	0	0			REV__nc|ENSG00000166762|Q96P56-3|CATSPER2	REV__nc|ENSG00000166762|Q96P56-3|CATSPER2	MULTI-MSMS	A375_MHC_IP_R1	1	371.91717529296875	3	371.902349	1112.68522	0.16647	6.191E-05	0.53768	0.00019996	0.70414	0.00026187	372.237052886294	37.838	0.56158	37.838	37.607	38.168	0					15	10	2	0	0	0	0.77526	1	12755	12755		0.26902	0	1	1181500	+		60095	20699	43838	44186	58541	58541					0.13338336895822067
VRDNASPKIY	10	Unmodified	_VRDNASPKIY_					0	0	0			REV__OR6C1|p.K263N|1|0.56|ENSG00000205330|chr12:55321388-55321388|A/T|missense_variant	REV__OR6C1|p.K263N|1|0.56|ENSG00000205330|chr12:55321388-55321388|A/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	388.5977783203125	3	388.212017	1161.61422	0.14528	5.6398E-05	-0.91988	-0.00035711	-0.77461	-0.00030071	388.21208001337544	19.724	0.50913	19.724	19.521	20.03	0					11	9	2	0	0	0	0.70496	1	5014	5014		5.7834	0.88642	1	462640	+		60096	27694	43839	44187	58542	58542					0.0398791539200829
VRDSNRRAH	9	Unmodified	_VRDSNRRAH_					0	0	0		nc|ENSG00000120647|Q9BR77-2|CCDC77;ENSG00000120647|ENST00000239830|CCDC77	nc|ENSG00000120647|Q9BR77-2|CCDC77	nc|ENSG00000120647|Q9BR77-2|CCDC77	MULTI-MSMS	A375_MHC_IP_R1	1	371.627685546875	3	370.867355	1109.58024	0.41022	0.00015214	0.35	0.0001298	0.76021	0.00028194	371.2018788104371	56.725	0.61104	56.725	56.498	57.109	0					22	11	3	0	0	0	0.75764	1	20389	20389		0.96228	0.50394	1	1694300			60097	3671	43840	44188	58543	58543					0.0298293174362243
VREEKTRKRKR	11	Unmodified	_VREEKTRKRKR_					0	0	0		nc|ENSG00000167562|Q9NV72|ZNF701	nc|ENSG00000167562|Q9NV72|ZNF701	nc|ENSG00000167562|Q9NV72|ZNF701	MSMS	A375_MHC_IP_R1	1	743.522216796875	2	743.457865	1484.90118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.26	1	146.26	145.76	146.76	0								0	0	0	0.16355	1	55966	55966		0.26902	0.26902	1				60098	14747	43841	44189	58544	58544					0.17812189333994866
VRERQKRQERL	11	Unmodified	_VRERQKRQERL_					0	0	0			REV__ENSG00000108592|ENST00000427159|FTSJ3	REV__ENSG00000108592|ENST00000427159|FTSJ3	MULTI-SECPEP	A375_MHC_IP_R2	2	500.70599365234375	3	499.962207	1496.86479	-0.51026	-0.00025511	-0.11733	-5.8662E-05	-0.62759	-0.00031377	499.961720499587	132.59	0.81752	132.78	132.35	133.17	0.18953					22	15	2	0	0	0	1.0014	1	52087	52087		0.094841	0.011491	1	2287300	+		60099	17544	43842	44190	58545	58545					0.13623312437312052
VRFEGQPTFY	10	Unmodified	_VRFEGQPTFY_					0	0	0			REV__ENST00000463044.1_1_3:31667577-31674651:+|nuORF	REV__ENST00000463044.1_1_3:31667577-31674651:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	415.6081237792969	3	415.208384	1242.60332	0.41724	0.00017324	-0.27658	-0.00011484	0.14066	5.8402E-05	415.2082165554461	49.999	0.56258	49.999	49.692	50.254	0					20	10	3	0	0	0	0.71364	1	17704	17704		6.1918	1.2948	1	3233000	+		60100	20373	43843	44191	58546	58546					-0.008274869822798792
VRFGGAEERR	10	Unmodified	_VRFGGAEERR_					0	0	0			REV__ENST00000397358.7_1_8:28748272-28748464:+|nuORF	REV__ENST00000397358.7_1_8:28748272-28748464:+|nuORF	MSMS	A375_MHC_IP_R2	2	392.9463806152344	3	392.879261	1175.61595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.905	1	40.68	40.18	41.18	0.77451								0	0	0	0.14302	1	14755	14755		19.987	0	1		+		60101	24353	43844	44192	58547	58547					0.0351696920060931
VRFKHRYL	8	Unmodified	_VRFKHRYL_					0	0	0		ENST00000543355.5_1_12:121017699-121019165:-|nuORF;ENST00000539716.1_1_12:121018789-121019198:-|nuORF;nc|ENSG00000167272|Q969H6-2|POP5;ENSG00000167272|ENST00000357500|POP5	ENST00000543355.5_1_12:121017699-121019165:-|nuORF	ENST00000543355.5_1_12:121017699-121019165:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	373.9575500488281	3	373.55757	1117.65088	0.123	4.5947E-05	-0.1769	-6.6082E-05	-0.053901	-2.0135E-05	373.55753804496817	24.168	0.55766	24.168	23.94	24.498	0					16	10	2	0	0	0	0.90057	1	6815	6815		29.082	17.587	1	6868300			60102	7174	43845	44193	58548	58548					0.09676256799207295
VRFKHRYL	8	Unmodified	_VRFKHRYL_					0	0	0		ENST00000543355.5_1_12:121017699-121019165:-|nuORF;ENST00000539716.1_1_12:121018789-121019198:-|nuORF;nc|ENSG00000167272|Q969H6-2|POP5;ENSG00000167272|ENST00000357500|POP5	ENST00000543355.5_1_12:121017699-121019165:-|nuORF	ENST00000543355.5_1_12:121017699-121019165:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	373.9574279785156	3	373.55757	1117.65088	0.078412	2.9292E-05	-0.87269	-0.000326	-0.79428	-0.00029671	373.5574343789099	23.324	0.30227	23.954	23.777	24.079	0.63014					14	5	3	0	0	0	0.19008	1	7504	7504		68.081	30.107	1	6530000			60103	7174	43845	44193	58549	58549					0.09676256799207295
VRFRSKKLKKK	11	Unmodified	_VRFRSKKLKKK_					0	0	0			REV__ENSG00000125772|ENST00000379019|GPCPD1	REV__ENSG00000125772|ENST00000379019|GPCPD1	MSMS	A375_MHC_IP_R2	2	709.8917846679688	2	709.477537	1416.94052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.09	1	138.17	137.67	138.67	0.083969								0	0	0	0.1636	1	54166	54166		0	0	1		+		60104	18361	43846	44194	58550	58550					0.24872941355511102
VRGAGAAL	8	Unmodified	_VRGAGAAL_					0	0	0		ENST00000430365.6_1_3:11685324-11685363:-|nuORF;ENST00000339364.9_1_10:98469376-98469727:-|nuORF	ENST00000430365.6_1_3:11685324-11685363:-|nuORF	ENST00000430365.6_1_3:11685324-11685363:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	714.8256225585938	1	714.425699	713.418422	-0.56407	-0.00040299	1.4248	0.0010179	0.86074	0.00061493	714.42641201728	143.29	0.55487	143.31	142.98	143.54	0.024414					17	10	3	0	0	0	0.77717	1	55988	55988		5.2307	0	1	10679000			60105	10845	43847	44195	58551	58551					0.05024994728614729
VRGFLQNL	8	Unmodified	_VRGFLQNL_					0	0	0		ENST00000606299.1_1_5:148886668-148892751:-|nuORF	ENST00000606299.1_1_5:148886668-148892751:-|nuORF	ENST00000606299.1_1_5:148886668-148892751:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	473.9803771972656	2	473.777077	945.5396	-0.74705	-0.00035394	0.28929	0.00013706	-0.45777	-0.00021688	473.7772149514077	35.714	0.35537	36.477	36.283	36.638	0.76338					9	6	2	0	0	0	0.91495	1	12901	12901		12.532	12.532	1	1418300			60106	13910	43848	44196	58552	58552					0.06465197371267095
VRGFLQNL	8	Unmodified	_VRGFLQNL_					0	0	0		ENST00000606299.1_1_5:148886668-148892751:-|nuORF	ENST00000606299.1_1_5:148886668-148892751:-|nuORF	ENST00000606299.1_1_5:148886668-148892751:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	473.777077	945.5396	-0.72472	-0.00034335	0.90436	0.00042847	0.17965	8.5113E-05	473.7774339541275	36.754	0.35325	36.754	36.592	36.945	0	0.13822	0.00049917	NaN	7.9102	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1254500			60107	13910	43848	44196							0.06465197371267095
VRGQRGLEER	10	Unmodified	_VRGQRGLEER_					0	0	0		ENSG00000170265|ENST00000610704|ZNF282;nc|ENSG00000170265|Q9UDV7-2|ZNF282	ENSG00000170265|ENST00000610704|ZNF282	ENSG00000170265|ENST00000610704|ZNF282	MULTI-MSMS	A375_MHC_IP_R2	2	600.7330932617188	2	600.33381	1198.65307	-0.56191	-0.00033733	0.03855	2.3143E-05	-0.52336	-0.00031419	600.3337405910278	128.9	2.3296	129.14	128.45	130.78	0.23946					85	45	2	0	0	0	0.71466	2	50708	50708;50933		5.7319	0.83484	1	70884000			60108	7486	43849	44197	58553;58554	58553					0.061686407463639625
VRGRGRGKYI	10	Unmodified	_VRGRGRGKYI_					0	0	0		ENSG00000010818|ENST00000367603|HIVEP2;nc|ENSG00000095951|P15822-2|HIVEP1;nc|ENSG00000095951|P15822-3|HIVEP1;ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000010818|ENST00000367603|HIVEP2;ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000010818|ENST00000367603|HIVEP2	MULTI-MSMS	A375_MHC_IP_R1	1	1162.0960693359375	1	1161.69633	1160.68906	-0.33838	-0.00039309	0.30322	0.00035225	-0.035158	-4.0842E-05	1161.6962772928966	149.54	1.5747	149.54	148.36	149.93	0					95	47	3	0	0	0	0.72747	1	57029	57029		0	0	1	367510			60109	987;2051	43850	44198	58555	58555					0.11514142713917863
VRGVKVFC	8	Unmodified	_VRGVKVFC_					0	0	0		SLC26A6|p.R544C|1|0.33|ENSG00000225697|chr3:48628684-48628684|G/A|missense_variant	SLC26A6|p.R544C|1|0.33|ENSG00000225697|chr3:48628684-48628684|G/A|missense_variant	SLC26A6|p.R544C|1|0.33|ENSG00000225697|chr3:48628684-48628684|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	454.16650390625	2	454.262748	906.510943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.5	1	142.5	142	143	0								0	0	0	0.16876	1	54677	54677		2.5775	0.27475	1				60110	29177	43851	44199	58556	58556					0.05394756470491302
VRGYYLSVF	9	Unmodified	_VRGYYLSVF_					0	0	0		TRIM37|p.Q791Lfs*6|1|0.17|ENSG00000108395|chr17:59017310-59017311|-/GACA|frameshift_variant;nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;ENSG00000108395|ENST00000262294|TRIM37	TRIM37|p.Q791Lfs*6|1|0.17|ENSG00000108395|chr17:59017310-59017311|-/GACA|frameshift_variant	TRIM37|p.Q791Lfs*6|1|0.17|ENSG00000108395|chr17:59017310-59017311|-/GACA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	368.9346618652344	3	368.53432	1102.58113	0.40003	0.00014743	-0.078123	-2.8791E-05	0.32191	0.00011863	368.5343216042539	71.108	0.46299	71.108	70.85	71.313	0					19	8	3	0	0	0	0.64971	1	25835	25835		11.495	3.8858	1	2022400			60111	2798	43852	44200	58557	58557					0.03394333339952027
VRGYYLSVF	9	Unmodified	_VRGYYLSVF_					0	0	0		TRIM37|p.Q791Lfs*6|1|0.17|ENSG00000108395|chr17:59017310-59017311|-/GACA|frameshift_variant;nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;ENSG00000108395|ENST00000262294|TRIM37	TRIM37|p.Q791Lfs*6|1|0.17|ENSG00000108395|chr17:59017310-59017311|-/GACA|frameshift_variant	TRIM37|p.Q791Lfs*6|1|0.17|ENSG00000108395|chr17:59017310-59017311|-/GACA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	368.9341735839844	3	368.53432	1102.58113	0.2872	0.00010584	0.0023279	8.579E-07	0.28953	0.0001067	368.53425596750503	70.238	0.45688	70.972	70.743	71.2	0.73421					14	8	2	0	0	0	0.69317	1	26636	26636		7.609	0	1	2946800			60112	2798	43852	44200	58558	58558					0.03394333339952027
VRGYYLSVF	9	Unmodified	_VRGYYLSVF_					0	0	0		TRIM37|p.Q791Lfs*6|1|0.17|ENSG00000108395|chr17:59017310-59017311|-/GACA|frameshift_variant;nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;ENSG00000108395|ENST00000262294|TRIM37	TRIM37|p.Q791Lfs*6|1|0.17|ENSG00000108395|chr17:59017310-59017311|-/GACA|frameshift_variant	TRIM37|p.Q791Lfs*6|1|0.17|ENSG00000108395|chr17:59017310-59017311|-/GACA|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	368.53432	1102.58113	0.2872	0.00010584	0.0023279	8.579E-07	0.28953	0.0001067	368.53425596750503	70.238	0.45688	70.972	70.743	71.2	0.73421	-0.068031	2.8425E-05	NaN	11.495	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2946800			60113	2798	43852	44200							0.03394333339952027
VRHFNFLVMC	10	Unmodified	_VRHFNFLVMC_					0	0	0			REV__ENST00000462119.5_1_6:111621047-111621194:-|nuORF	REV__ENST00000462119.5_1_6:111621047-111621194:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	633.716796875	2	633.317728	1264.6209	-0.57223	-0.00036241	0.36473	0.00023099	-0.2075	-0.00013142	633.3173465906435	55.997	0.91437	55.997	55.533	56.447	0					54	17	5	0	0	0	0.93578	1	19965	19965		10.074	10.074	1	9185600	+		60114	24983	43853	44201	58559	58559					-0.0008218625264362345
VRHKDVRRI	9	Unmodified	_VRHKDVRRI_					0	0	0		ENSG00000169006|ENST00000306928|NTSR2	ENSG00000169006|ENST00000306928|NTSR2	ENSG00000169006|ENST00000306928|NTSR2	MULTI-MSMS	A375_MHC_IP_R1	1	393.6158752441406	3	393.579146	1177.71561	0.13245	5.2129E-05	0.39907	0.00015707	0.53152	0.0002092	393.579308529914	42.208	0.55522	42.208	42.032	42.587	0					12	10	2	0	0	0	0.64808	1	14758	14758		7.609	0.50723	1	1523900			60115	7368	43854	44202	58560	58560					0.13385831605205567
VRHRLLGR	8	Unmodified	_VRHRLLGR_					0	0	0		ENST00000575894.1_1_16:697354-697711:+|nuORF	ENST00000575894.1_1_16:697354-697711:+|nuORF	ENST00000575894.1_1_16:697354-697711:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	503.22015380859375	2	503.822684	1005.63082	-0.47637	-0.00024001	0.095199	4.7963E-05	-0.38118	-0.00019205	504.3233361644324	147.81	0.24698	147.82	147.71	147.95	0.018692					22	16	2	0	0	0	0.972	1	57442	57442		0	0	1	96158			60116	13637	43855	44203	58561	58561					0.12822505859287503
VRHRQVKHYRI	11	Unmodified	_VRHRQVKHYRI_					0	0	0		nc|ENSG00000155926|Q13239-2|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA	nc|ENSG00000155926|Q13239-2|SLA	nc|ENSG00000155926|Q13239-2|SLA	MULTI-MSMS	A375_MHC_IP_R1	1	747.1141967773438	2	746.442018	1490.86948	-0.29735	-0.00022196	0.53279	0.0003977	0.23544	0.00017574	746.4423442166077	71.999	0.55511	71.999	71.665	72.22	0					23	10	3	0	0	0	0.73902	2	26111	26111;26147		0.30703	0	1	10167000			60117	6165	43856	44204	58562;58563	58562					0.14368241370743817
VRHWRPRLPEG	11	Unmodified	_VRHWRPRLPEG_					0	0	0		ENST00000469506.3_1_3:42201841-42226383:+|nuORF	ENST00000469506.3_1_3:42201841-42226383:+|nuORF	ENST00000469506.3_1_3:42201841-42226383:+|nuORF	MSMS	A375_MHC_IP_R2	2	701.9812622070312	2	701.894369	1401.77419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130	1	130.22	129.72	130.72	0.2142								0	0	0	0.16203	1	51097	51097		8.1555	1.5252	1				60118	12319	43857	44205	58564	58564					0.0893688817968723
VRIDKGHSEK	10	Unmodified	_VRIDKGHSEK_					0	0	0			REV__ENSG00000177181|ENST00000431473|RIMKLA	REV__ENSG00000177181|ENST00000431473|RIMKLA	MSMS	A375_MHC_IP_R2	2	390.2695617675781	3	390.219283	1167.63602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.592	1	28.271	27.771	28.771	0.67857								0	0	0	0.15353	1	9447	9447		5.4027	0	1		+		60119	21444	43858	44206	58565	58565					0.05890720140564554
VRIFIDQKS	9	Unmodified	_VRIFIDQKS_					0	0	0			REV__ENST00000463884.1_1_X:153555730-153558035:+|nuORF	REV__ENST00000463884.1_1_X:153555730-153558035:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	369.9447021484375	3	369.216991	1104.62914	0.47751	0.0001763	1.6199	0.0005981	2.0974	0.0007744	369.55284153389346	71.532	0.70623	71.532	71.211	71.917	0					21	13	3	0	0	0	0.68705	1	25997	25997		8.1555	0.54658	1	2281800	+		60120	16157	43859	44207	58566	58566					0.08101407259982807
VRIKTQSVQK	10	Unmodified	_VRIKTQSVQK_					0	0	0			REV__nc|ENSG00000100433|P57789|KCNK10	REV__nc|ENSG00000100433|P57789|KCNK10	MSMS	A375_MHC_IP_R1	1	396.28021240234375	3	396.247062	1185.71936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.53	1	27.53	27.03	28.03	0								0	0	0	0.15382	1	8365	8365		8.4443	0.83535	1		+		60121	17092	43860	44208	58567	58567					0.13392456588394452
VRILKLLPAL	10	Unmodified	_VRILKLLPAL_					0	0	0		FBN1|p.E2779K|1|0.18|ENSG00000166147|chr15:48411271-48411271|C/T|missense_variant	FBN1|p.E2779K|1|0.18|ENSG00000166147|chr15:48411271-48411271|C/T|missense_variant	FBN1|p.E2779K|1|0.18|ENSG00000166147|chr15:48411271-48411271|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	379.6141052246094	3	379.269027	1134.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.94	1	141.94	141.44	142.44	0								0	0	0	0.15642	1	54466	54466		0	0	1				60122	13982	43861	44209	58568	58568					0.22324897501266605
VRISRELLF	9	Unmodified	_VRISRELLF_					0	0	0		nc|ENSG00000204618|Q9H2S5-3|RNF39	nc|ENSG00000204618|Q9H2S5-3|RNF39	nc|ENSG00000204618|Q9H2S5-3|RNF39	MULTI-MSMS	A375_MHC_IP_R1	1	378.63287353515625	3	378.232752	1131.67643	0.33481	0.00012663	-0.23343	-8.8292E-05	0.10137	3.8342E-05	378.23265502360374	73.969	0.55739	73.969	73.74	74.298	0					20	10	3	0	0	0	0.54799	1	26967	26967		17.443	0	1	2449600			60123	14862	43862	44210	58569	58569					0.11585686530997918
VRISRELLF	9	Unmodified	_VRISRELLF_					0	0	0		nc|ENSG00000204618|Q9H2S5-3|RNF39	nc|ENSG00000204618|Q9H2S5-3|RNF39	nc|ENSG00000204618|Q9H2S5-3|RNF39	MULTI-MSMS	A375_MHC_IP_R2	2	378.6327209472656	3	378.232752	1131.67643	0.10871	4.1119E-05	0.13335	5.0437E-05	0.24206	9.1556E-05	378.23277409103804	72.97	0.55978	73.705	73.379	73.938	0.7354					18	10	3	0	0	0	0.44183	1	27711	27711		22.658	0	1	3399500			60124	14862	43862	44210	58570	58570					0.11585686530997918
VRISRELLF	9	Unmodified	_VRISRELLF_					0	0	0		nc|ENSG00000204618|Q9H2S5-3|RNF39	nc|ENSG00000204618|Q9H2S5-3|RNF39	nc|ENSG00000204618|Q9H2S5-3|RNF39	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	378.232752	1131.67643	0.33481	0.00012663	-0.23343	-8.8292E-05	0.10137	3.8342E-05	378.23265502360374	73.969	0.55739	73.969	73.74	74.298	0	0.13188	-0.0002506	NaN	22.658	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2449600			60125	14862	43862	44210							0.11585686530997918
VRKAIHAL	8	Unmodified	_VRKAIHAL_					0	0	0		TELO2|p.E14K|1|0.34|ENSG00000100726|chr16:1494321-1494321|G/A|missense_variant	TELO2|p.E14K|1|0.34|ENSG00000100726|chr16:1494321-1494321|G/A|missense_variant	TELO2|p.E14K|1|0.34|ENSG00000100726|chr16:1494321-1494321|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	454.6950988769531	2	454.295436	906.57632	-0.032052	-1.4561E-05	-0.17529	-7.9635E-05	-0.20735	-9.4196E-05	454.2951386453971	147.65	0.69098	147.67	147.52	148.21	0.019913					80	42	3	0	0	0	0.77861	1	57375	57375		0	0	1	625620			60126	29322	43863	44211	58571	58571					0.119294939878273
VRKAIHAL	8	Unmodified	_VRKAIHAL_					0	0	0		TELO2|p.E14K|1|0.34|ENSG00000100726|chr16:1494321-1494321|G/A|missense_variant	TELO2|p.E14K|1|0.34|ENSG00000100726|chr16:1494321-1494321|G/A|missense_variant	TELO2|p.E14K|1|0.34|ENSG00000100726|chr16:1494321-1494321|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	454.295436	906.57632	-0.57988	-0.00026344	0.15085	6.8532E-05	-0.42903	-0.0001949	454.2954288867488	147.64	0.29106	147.64	147.53	147.83	0	-0.019043	0.00010712	NaN	0	49	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	738100			60127	29322	43863	44211							0.119294939878273
VRKDDPTLL	9	Unmodified	_VRKDDPTLL_					0	0	0		ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	MULTI-MSMS	A375_MHC_IP_R2	2	353.5854187011719	3	352.873113	1055.59751	-0.25481	-8.9914E-05	-0.089391	-3.1544E-05	-0.3442	-0.00012146	352.87305511833745	31.427	1.0674	32.146	31.669	32.736	0.71857					58	20	4	0	0	0	0.23226	1	11104	11104		35.612	1.7909	1	26981000			60128	3655	43864	44212	58572	58572					0.07193414506036788
VRKDDPTLL	9	Unmodified	_VRKDDPTLL_					0	0	0		ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	MULTI-SECPEP	A375_MHC_IP_R2	2	528.6779174804688	2	528.806031	1055.59751	-0.57193	-0.00030244	-0.25892	-0.00013692	-0.83086	-0.00043936	528.8058551141021	31.435	0.96716	32.153	31.669	32.636	0.71857					47	18	4	0	0	0	0.16595	1	11096	11096		53.404	0	1	20643000			60129	3655	43864	44212	58573	58573					0.07193414506036788
VRKGGDRV	8	Unmodified	_VRKGGDRV_					0	0	0			REV__ENSG00000006634|ENST00000265728|DBF4	REV__ENSG00000006634|ENST00000265728|DBF4	MULTI-SECPEP	A375_MHC_IP_R1	1	444.1640625	2	443.764501	885.514448	-0.040316	-1.7891E-05	0.39717	0.00017625	0.35685	0.00015836	443.7645726591992	104.03	1.5782	104.03	102.91	104.49	0					73	30	3	0	0	0	0.972	1	38156	38156		7.9102	0	1	4410500	+		60130	16140	43865	44213	58574	58574					0.06711142568701689
VRKHLRRLYRR	11	Unmodified	_VRKHLRRLYRR_					0	0	0		ENSG00000185955|ENST00000332375|SPACDR	ENSG00000185955|ENST00000332375|SPACDR	ENSG00000185955|ENST00000332375|SPACDR	MULTI-MSMS	A375_MHC_IP_R1	1	777.3912353515625	2	776.992209	1551.96987	-0.8191	-0.00063644	0.080768	6.2756E-05	-0.73833	-0.00057368	776.9921415430216	148.81	2.3457	148.81	147.59	149.93	0					231	82	5	0	0	0	0.73934	3	56449	56449;56651;56866		0	0	1	2625300			60131	8711	43866	44214	58575;58576;58577	58575					0.2159589842440255
VRKHLRRLYRR	11	Unmodified	_VRKHLRRLYRR_					0	0	0		ENSG00000185955|ENST00000332375|SPACDR	ENSG00000185955|ENST00000332375|SPACDR	ENSG00000185955|ENST00000332375|SPACDR	MULTI-MSMS	A375_MHC_IP_R1	1	518.7300415039062	3	518.330565	1551.96987	-0.87918	-0.00045571	0.038705	2.0062E-05	-0.84048	-0.00043565	518.3304923687928	148.77	2.3399	148.77	147.58	149.92	0					236	81	5	0	0	0	0.73934	5	56548	56548;56714;56755;56925;56954		0	0	1	1418700			60132	8711	43866	44214	58578;58579;58580;58581;58582	58578					0.2159589842440255
VRKHLRRLYRR	11	Unmodified	_VRKHLRRLYRR_					0	0	0		ENSG00000185955|ENST00000332375|SPACDR	ENSG00000185955|ENST00000332375|SPACDR	ENSG00000185955|ENST00000332375|SPACDR	MULTI-MSMS	A375_MHC_IP_R2	2	777.3916015625	2	776.992209	1551.96987	-0.76662	-0.00059566	0.10915	8.481E-05	-0.65747	-0.00051085	776.9921624725871	148.82	2.1631	148.84	147.64	149.8	0.018707					219	75	4	0	0	0	0.73934	4	57516	57516;57647;57710;57906		0	0	1	2040600			60133	8711	43866	44214	58583;58584;58585;58586	58583					0.2159589842440255
VRKHVHLASS	10	Unmodified	_VRKHVHLASS_					0	0	0			REV__nc|ENSG00000173480|Q8TAU3-2|ZNF417	REV__nc|ENSG00000173480|Q8TAU3-2|ZNF417	MULTI-SECPEP	A375_MHC_IP_R2	2	567.729736328125	2	567.330539	1132.64652	-0.24826	-0.00014085	-1.0341	-0.00058667	-1.2823	-0.00072751	567.3297836405551	135.29	0.86958	135.43	135.2	136.07	0.13901					22	16	2	0	0	0	0.94516	1	53205	53205		3.5965	3.5965	1	5351200	+		60134	21225	43867	44215	58587	58587					0.08550747585650242
VRKKKLRKLKR	11	Unmodified	_VRKKKLRKLKR_					0	0	0			REV__ENST00000398637.9_1_12:46581311-46581524:-|nuORF	REV__ENST00000398637.9_1_12:46581311-46581524:-|nuORF	MSMS	A375_MHC_IP_R1	1	727.0211791992188	2	727.019904	1452.02525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.26	1	120.26	119.76	120.76	0								0	0	0	0.1636	1	44537	44537		0	0	1		+		60135	24377	43868	44216	58588	58588					0.31732311892142206
VRKLLCFALF	10	Unmodified	_VRKLLCFALF_					0	0	0		ENST00000262370.11_1_16:4674930-4700423:+|nuORF	ENST00000262370.11_1_16:4674930-4700423:+|nuORF	ENST00000262370.11_1_16:4674930-4700423:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	404.2962341308594	3	403.910733	1208.71037	0.10836	4.3768E-05	1.0609	0.00042851	1.1693	0.00047228	403.9111672310982	44.996	0.45621	44.996	44.727	45.183	0					12	8	2	0	0	0	0.93216	1	15696	15696		1.9064	0	1	1235000			60136	10299	43869	44217	58589	58589					0.11436391698384796
VRKMSRMFCQA	11	Unmodified	_VRKMSRMFCQA_					0	0	0		nc|ENSG00000146063|Q8WV44-2|TRIM41;ENSG00000146063|ENST00000315073|TRIM41;ENST00000510072.1_1_5:180660708-180661192:+|nuORF;ENST00000515223.1_1_5:180660600-180660825:+|nuORF;ENST00000508930.1_1_5:180660600-180661772:+|nuORF	nc|ENSG00000146063|Q8WV44-2|TRIM41	nc|ENSG00000146063|Q8WV44-2|TRIM41	MULTI-SECPEP	A375_MHC_IP_R2	2	452.3188781738281	3	452.89476	1355.66245	-0.39687	-0.00017974	2.0815	0.00094268	1.6846	0.00076294	453.2308480331809	48.921	0.25444	49.678	49.588	49.843	0.75736					6	4	2	0	0	0	0.99994	1	18396	18396		3.5927	0.74939	1	1214000			60137	5601	43870	44218	58590	58590					-0.0011537355558175477
VRKPLPQKRKH	11	Unmodified	_VRKPLPQKRKH_					0	0	0			REV__ENSG00000129654|ENST00000322957|FOXJ1	REV__ENSG00000129654|ENST00000322957|FOXJ1	MSMS	A375_MHC_IP_R2	2	693.906982421875	2	693.943862	1385.87317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.71	1	116.4	115.9	116.9	0.68999								0	0	0	0.16334	1	43619	43619		1.3295	0	1		+		60138	18502	43871	44219	58591	58591					0.19566911144602273
VRKRPYKWKEL	11	Unmodified	_VRKRPYKWKEL_					0	0	0			REV__ENST00000605834.1_1_4:185396718-185397009:+|nuORF	REV__ENST00000605834.1_1_4:185396718-185397009:+|nuORF	MSMS	A375_MHC_IP_R1	1	501.7086486816406	3	501.636661	1501.88815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.42	1	137.42	136.92	137.92	0								0	0	0	0.16309	1	52897	52897		2.6312	1.1761	1		+		60139	26534	43872	44220	58592	58592					0.15728358221917915
VRKRPYKWKEL	11	Unmodified	_VRKRPYKWKEL_					0	0	0			REV__ENST00000605834.1_1_4:185396718-185397009:+|nuORF	REV__ENST00000605834.1_1_4:185396718-185397009:+|nuORF	MSMS	A375_MHC_IP_R2	2	501.70867919921875	3	501.636661	1501.88815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.29	1	137.38	136.88	137.88	0.083969								0	0	0	0.16309	1	53892	53892		2.6312	1.1761	1		+		60140	26534	43872	44220	58593	58593					0.15728358221917915
VRKYRRARLWG	11	Unmodified	_VRKYRRARLWG_					0	0	0			REV__MYO3B|p.G1076R|1|0.28|ENSG00000071909|chr2:170499745-170499745|G/A|missense_variant	REV__MYO3B|p.G1076R|1|0.28|ENSG00000071909|chr2:170499745-170499745|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	487.3585205078125	3	487.628499	1459.86367	-0.55476	-0.00027052	-1.6274	-0.00079356	-2.1821	-0.0010641	487.62773539263964	131.93	0.25127	132.11	131.95	132.2	0.18953					6	4	2	0	0	0	1.0014	1	51889	51889		0.45452	0	1	1753100	+		60141	27070	43873	44221	58594	58594					0.1521314285905646
VRLAKKVLHPL	11	Unmodified	_VRLAKKVLHPL_					0	0	0			REV__nc|ENSG00000115607|O95256-2|IL18RAP	REV__nc|ENSG00000115607|O95256-2|IL18RAP	MSMS	A375_MHC_IP_R2	2	425.601806640625	3	425.28708	1272.83941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.08	1	54.831	54.331	55.331	0.75105								0	0	0	0.16336	1	20414	20414		1.2148	0.51716	1		+		60142	17899	43874	44222	58595	58595					0.21390489652844735
VRLAWALALR	10	Unmodified	_VRLAWALALR_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MSMS	A375_MHC_IP_R2	2	390.26409912109375	3	390.248625	1167.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.478	1	53.23	52.73	53.73	0.75225								0	0	0	0.15531	1	19781	19781		3.5871	1.1523	1				60143	6149	43875	44223	58596	58596					0.1468938552181953
VRLLRRLRRR	10	Unmodified	_VRLLRRLRRR_					0	0	0		ENST00000532004.5_1_11:810000-812833:+|nuORF	ENST00000532004.5_1_11:810000-812833:+|nuORF	ENST00000532004.5_1_11:810000-812833:+|nuORF	MSMS	A375_MHC_IP_R2	2	697.574951171875	2	697.476195	1392.93784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.28	1	130.5	130	131	0.2142								0	0	0	0.15642	1	51204	51204		0	0	1				60144	13182	43876	44224	58597	58597					0.25708530741235336
VRLLRRLRRRR	11	Unmodified	_VRLLRRLRRRR_					0	0	0		ENST00000532004.5_1_11:810000-812833:+|nuORF	ENST00000532004.5_1_11:810000-812833:+|nuORF	ENST00000532004.5_1_11:810000-812833:+|nuORF	MSMS	A375_MHC_IP_R1	1	775.7008056640625	2	775.52675	1549.03895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.311	1	78.311	77.811	78.811	0								0	0	0	0.1636	1	28580	28580		0	0	1				60145	13182	43877	44225	58598	58598					0.28638982443931127
VRLPAHFG	8	Unmodified	_VRLPAHFG_					0	0	0			REV__ENST00000590778.1_1_19:5994848-5997295:-|nuORF	REV__ENST00000590778.1_1_19:5994848-5997295:-|nuORF	MSMS	A375_MHC_IP_R2	2	448.658447265625	2	448.758687	895.502821	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.67	1	122.11	121.61	122.61	0.44488								0	0	0	0.16876	1	46567	46567		0.79363	0	1		+		60146	26440	43878	44226	58599	58599					0.05088945545378465
VRLPFVRRF	9	Unmodified	_VRLPFVRRF_					0	0	0		ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-MSMS	A375_MHC_IP_R1	1	397.6488342285156	3	397.248737	1188.72438	-0.19623	-7.7952E-05	0.34	0.00013506	0.14377	5.7111E-05	397.24881037768137	58.811	0.96693	58.811	58.379	59.346	0					56	18	4	0	0	0	0.047602	1	21063	21063		51.415	37.01	1	24835000			60147	6530	43879	44227	58600	58600					0.13756805241678194
VRLPFVRRF	9	Unmodified	_VRLPFVRRF_					0	0	0		ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-MSMS	A375_MHC_IP_R2	2	397.6202087402344	3	397.248737	1188.72438	-0.4101	-0.00016291	0.072203	2.8683E-05	-0.3379	-0.00013423	397.2487524264566	57.651	0.71011	58.4	58.019	58.729	0.74894					44	13	4	0	0	0	0.047602	2	21783	21745;21783		51.415	36.167	1	30690000			60148	6530	43879	44227	58601;58602	58602					0.13756805241678194
VRLPRKTI	8	Unmodified	_VRLPRKTI_					0	0	0			REV__ENST00000421044.1_1_3:40638598-40638781:-|nuORF	REV__ENST00000421044.1_1_3:40638598-40638781:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	492.22955322265625	2	491.829643	981.644734	-0.3335	-0.00016402	-0.054512	-2.6811E-05	-0.38801	-0.00019084	491.8295189658691	147.8	0.20616	147.82	147.72	147.92	0.018707					24	14	2	0	0	0	0.77839	1	57445	57445		0.79363	0	1	148920	+		60149	24582	43880	44228	58603	58603					0.1531773856769405
VRLQKKQAER	10	Unmodified	_VRLQKKQAER_					0	0	0		nc|ENSG00000165164|Q6ZTR5-6|CFAP47;ENSG00000165164|ENST00000378653|CFAP47;nc|ENSG00000165164|Q6ZTR5-2|CFAP47;nc|ENSG00000165164|Q6ZTR5-1|CFAP47	nc|ENSG00000165164|Q6ZTR5-6|CFAP47	nc|ENSG00000165164|Q6ZTR5-6|CFAP47	MULTI-MSMS	A375_MHC_IP_R2	2	628.782470703125	2	628.383303	1254.75205	-0.79771	-0.00050127	-0.64515	-0.0004054	-1.4429	-0.00090667	628.3829268092342	131.63	0.60754	131.82	131.59	132.2	0.18953					21	11	3	0	0	0	0.72078	1	51782	51782		2.9952	1.5133	1	9193700			60150	6922	43881	44229	58604	58604					0.13486663711250912
VRLQKKQAER	10	Unmodified	_VRLQKKQAER_					0	0	0		nc|ENSG00000165164|Q6ZTR5-6|CFAP47;ENSG00000165164|ENST00000378653|CFAP47;nc|ENSG00000165164|Q6ZTR5-2|CFAP47;nc|ENSG00000165164|Q6ZTR5-1|CFAP47	nc|ENSG00000165164|Q6ZTR5-6|CFAP47	nc|ENSG00000165164|Q6ZTR5-6|CFAP47	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	628.383303	1254.75205	-0.84173	-0.00052893	-0.97086	-0.00061007	-1.8126	-0.001139	628.38268073938	131.72	0.75549	131.72	131.48	132.23	0	-0.049997	-0.00021917	NaN	2.9952	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8569000			60151	6922	43881	44229							0.13486663711250912
VRLRKSRPV	9	Unmodified	_VRLRKSRPV_					0	0	0		STK10|p.P409R|1|0.13|ENSG00000072786|chr5:172093740-172093740|G/C|missense_variant	STK10|p.P409R|1|0.13|ENSG00000072786|chr5:172093740-172093740|G/C|missense_variant	STK10|p.P409R|1|0.13|ENSG00000072786|chr5:172093740-172093740|G/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	371.3118591308594	3	370.912125	1109.71454	0.15553	5.7688E-05	-0.027921	-1.0356E-05	0.12761	4.7332E-05	370.91203480537064	35.14	0.3536	35.903	35.727	36.081	0.76338					18	6	4	0	0	0	0.81645	1	12742	12742		0	0	1	4249900			60152	29262	43882	44230	58605	58605					0.16407617236313854
VRLRLKKRLRK	11	Unmodified	_VRLRLKKRLRK_					0	0	0			REV__ENST00000552369.5_1_12:49233297-49239534:-|nuORF	REV__ENST00000552369.5_1_12:49233297-49239534:-|nuORF	MSMS	A375_MHC_IP_R1	1	733.7636108398438	2	733.517528	1465.0205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.391	1	86.391	85.891	86.891	0								0	0	0	0.1636	1	31678	31678		0	0	1		+		60153	26053	43883	44231	58606	58606					0.3065942774935593
VRLTNEPGKL	10	Unmodified	_VRLTNEPGKL_					0	0	0			REV__ENSG00000005810|ENST00000544440|MYCBP2	REV__ENSG00000005810|ENST00000544440|MYCBP2	MULTI-MSMS	A375_MHC_IP_R1	1	376.92120361328125	3	376.224146	1125.65061	0.21408	8.0541E-05	-3.3846	-0.0012734	-3.1705	-0.0011928	376.22336608334655	25.588	0.61021	25.588	25.306	25.917	0					21	11	3	0	0	0	0.69726	2	7505	7505;7506		13.519	0.788	1	5852000	+		60154	16125	43884	44232	58607;58608	58607					0.09280792288700468
VRLTVFVW	8	Unmodified	_VRLTVFVW_					0	0	0			REV__nc|ENSG00000157766|P16112-3|ACAN	REV__nc|ENSG00000157766|P16112-3|ACAN	MULTI-SECPEP	A375_MHC_IP_R1	1	509.968505859375	2	510.30547	1018.59639	-0.79827	-0.00040736	2.431	0.0012406	1.6328	0.00083321	510.8079155288601	141.75	0.15155	141.75	141.68	141.83	0					4	2	2	0	0	0	0.972	1	54423	54423		3.9444	1.6417	1	326940	+		60155	20043	43885	44233	58609	58609					0.08783244927803935
VRLVKRREY	9	Unmodified	_VRLVKRREY_					0	0	0		ENSG00000152620|ENST00000381937|NADK2;nc|ENSG00000152620|Q4G0N4-2|NADK2	ENSG00000152620|ENST00000381937|NADK2	ENSG00000152620|ENST00000381937|NADK2	MULTI-MSMS	A375_MHC_IP_R1	1	610.7760009765625	2	609.875114	1217.73567	-0.68455	-0.00041749	-0.48048	-0.00029303	-1.165	-0.00071052	609.8746768146835	145.18	0.50362	145.18	144.92	145.42	0					28	23	2	0	0	0	0.7724	2	55666	55666;55724		0.52476	0.12405	1	364380			60156	5976	43886	44234	58610;58611	58610					0.1355158254516482
VRLVLLRLV	9	Unmodified	_VRLVLLRLV_					0	0	0		nc|ENSG00000106633|P35557-3|GCK;ENSG00000106633|ENST00000403799|GCK;nc|ENSG00000106633|P35557-2|GCK	nc|ENSG00000106633|P35557-3|GCK	nc|ENSG00000106633|P35557-3|GCK	MULTI-SECPEP	A375_MHC_IP_R1	1	541.2835083007812	2	540.884419	1079.75428	-0.98303	-0.00053171	-0.52503	-0.00028398	-1.5081	-0.00081569	540.8840242609942	142.01	0.15314	142.01	141.93	142.08	0					4	2	2	0	0	0	0.81779	1	54512	54512		0	0	1	10757000			60157	2704	43887	44235	58612	58612					0.21759744187011165
VRLWSLQTF	9	Unmodified	_VRLWSLQTF_					0	0	0		ENSG00000148835|ENST00000369839|TAF5	ENSG00000148835|ENST00000369839|TAF5	ENSG00000148835|ENST00000369839|TAF5	MSMS	A375_MHC_IP_R2	2	383.9184875488281	3	383.885353	1148.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.494	1	49.251	48.751	49.751	0.75737								0	0	0	0.15438	1	18211	18211		14.405	3.6059	1				60158	5767	43888	44236	58613	58613					0.06585711122602333
VRMAKVRIF	9	Unmodified	_VRMAKVRIF_					0	0	0			REV__nc|ENSG00000140265|Q8IWY8-3|ZSCAN29	REV__nc|ENSG00000140265|Q8IWY8-3|ZSCAN29	MULTI-MSMS	A375_MHC_IP_R2	2	374.3008728027344	3	373.898828	1118.67465	0.35448	0.00013254	0.67121	0.00025096	1.0257	0.0003835	373.8990289923035	27.748	0.7598	28.426	28.2	28.96	0.67857					37	14	3	0	0	0	0.68705	1	9660	9660		8.1555	1.0538	1	62400000	+		60159	27261	43889	44237	58614	58614					0.12006354241384543
VRMEVFYTD	9	Unmodified	_VRMEVFYTD_					0	0	0			REV__tr|U7T5Y3|U7T5Y3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00129PE=4SV=1	REV__tr|U7T5Y3|U7T5Y3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00129PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	387.5865478515625	3	387.186592	1158.53795	0.14288	5.5321E-05	0.26015	0.00010073	0.40303	0.00015605	387.18648189076754	28.313	0.75605	28.313	27.735	28.491	0					25	14	2	0	0	0	0.76827	1	8745	8745		4.1895	0	1	8216100	+		60160	28844	43890	44238	58615	58615					-0.03498224499639946
VRMLKGTV	8	Unmodified	_VRMLKGTV_					0	0	0			REV__ENSG00000113593|ENST00000261308|PPWD1	REV__ENSG00000113593|ENST00000261308|PPWD1	MSMS	A375_MHC_IP_R1	1	452.3323974609375	2	452.275855	902.537157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.64	1	135.64	135.14	136.14	0								0	0	0	0.16876	1	52278	52278		2.5775	0	1		+		60161	17791	43891	44239	58616	58616					0.08199025641977187
VRNHRVRWFWR	11	Unmodified	_VRNHRVRWFWR_					0	0	0			REV__ENSG00000102996|ENST00000219271|MMP15	REV__ENSG00000102996|ENST00000219271|MMP15	MSMS	A375_MHC_IP_R1	1	806.447509765625	2	806.447634	1610.88072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.709	1	98.709	98.209	99.209	0								0	0	0	0.1636	1	36265	36265		0	0	1		+		60162	17243	43892	44240	58617	58617					0.09971063464877261
VRNLESIEIK	10	Unmodified	_VRNLESIEIK_					0	0	0			REV__CON__P35908	REV__CON__P35908	MULTI-MSMS	A375_MHC_IP_R1	1	400.9401550292969	3	400.903072	1199.68739	-0.51179	-0.00020518	0.19907	7.981E-05	-0.31271	-0.00012537	400.90307790756043	27.923	0.50443	27.923	27.634	28.138	0					17	9	3	0	0	0	0.68889	1	8418	8418		14.218	0.69951	1	5366900	+	+	60163	15865	43893	44241	58618	58618					0.09553044114591103
VRNLHIREL	9	Unmodified	_VRNLHIREL_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;nc|ENSG00000198586|Q9UKI8-3|TLK1;nc|ENSG00000198586|Q9UKI8-4|TLK1;nc|ENSG00000198586|Q9UKI8-5|TLK1;ENSG00000198586|ENST00000431350|TLK1;nc|ENSG00000198586|Q9UKI8-2|TLK1;ENST00000456760.1_1_9:125449379-125449940:+|nuORF	nc|ENSG00000146872|Q86UE8-3|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	MULTI-MSMS	A375_MHC_IP_R1	1	384.29986572265625	3	383.899885	1148.67783	-0.17338	-6.656E-05	-0.20052	-7.6981E-05	-0.3739	-0.00014354	383.8998293661536	29.243	0.35573	29.243	29.047	29.403	0					12	6	2	0	0	0	0.12591	1	9121	9121		46.022	21.141	1	11586000			60164	5645	43894	44242	58619	58619					0.10943320619753649
VRNLHIREL	9	Unmodified	_VRNLHIREL_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;nc|ENSG00000198586|Q9UKI8-3|TLK1;nc|ENSG00000198586|Q9UKI8-4|TLK1;nc|ENSG00000198586|Q9UKI8-5|TLK1;ENSG00000198586|ENST00000431350|TLK1;nc|ENSG00000198586|Q9UKI8-2|TLK1;ENST00000456760.1_1_9:125449379-125449940:+|nuORF	nc|ENSG00000146872|Q86UE8-3|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	MULTI-MSMS	A375_MHC_IP_R2	2	384.29974365234375	3	383.899885	1148.67783	-0.4556	-0.0001749	0.21405	8.2176E-05	-0.24155	-9.2729E-05	383.8999472196313	28.313	0.30387	28.992	28.808	29.112	0.67857					13	5	3	0	0	0	0.013192	1	9760	9760		92.201	49.366	1	13680000			60165	5645	43894	44242	58620	58620					0.10943320619753649
VRNLPQYV	8	Unmodified	_VRNLPQYV_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;NONO|p.E162K|1|0.18|ENSG00000147140|chrX:71294362-71294362|G/A|missense_variant	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MSMS	A375_MHC_IP_R1	1	495.32391357421875	2	494.782359	987.550165	-0.18863	-9.333E-05	0.091826	4.5434E-05	-0.096803	-4.7896E-05	494.7823969585977	45.759	0.8111	45.759	45.434	46.245	0					36	15	3	0	0	0	0.61116	1	16092	16092		44.407	18.066	1	14983000			60166	5662	43895	44243	58621	58621					0.05589180025708629
VRNLPQYV	8	Unmodified	_VRNLPQYV_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;NONO|p.E162K|1|0.18|ENSG00000147140|chrX:71294362-71294362|G/A|missense_variant	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-SECPEP	A375_MHC_IP_R2	2	495.1819763183594	2	494.782359	987.550165	-0.60928	-0.00030146	0.080907	4.0031E-05	-0.52837	-0.00026143	494.78235796082146	44.903	0.66183	45.672	45.34	46.001	0.7691					30	12	3	0	0	0	0.17547	1	16724	16724		85.357	68.414	1	23246000			60167	5662	43895	44243	58622	58622					0.05589180025708629
VRNLRLKQLL	10	Unmodified	_VRNLRLKQLL_					0	0	0		ENST00000555307.5_1_14:73876696-73924916:-|nuORF	ENST00000555307.5_1_14:73876696-73924916:-|nuORF	ENST00000555307.5_1_14:73876696-73924916:-|nuORF	MSMS	A375_MHC_IP_R2	2	418.6541748046875	3	418.278585	1251.81392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.24	1	142.27	141.77	142.77	0.030731								0	0	0	0.15585	1	55610	55610		0.77653	0.27058	1				60168	13429	43896	44244	58623	58623					0.19809015130408625
VRNPKILLL	9	Unmodified	_VRNPKILLL_					0	0	0		nc|ENSG00000005471|P21439-3|ABCB4;ENSG00000005471|ENST00000649586|ABCB4;nc|ENSG00000005471|P21439|ABCB4;ABCB1|p.T1015Pfs*3|1|0.21|ENSG00000085563|chr7:87516550-87516550|T/-|frameshift_variant;nc|ENSG00000085563|P08183-2|ABCB1;ENSG00000085563|ENST00000622132|ABCB1	nc|ENSG00000005471|P21439-3|ABCB4;ABCB1|p.T1015Pfs*3|1|0.21|ENSG00000085563|chr7:87516550-87516550|T/-|frameshift_variant	ABCB1|p.T1015Pfs*3|1|0.21|ENSG00000085563|chr7:87516550-87516550|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	356.3094177246094	3	355.90961	1064.707	-0.53647	-0.00019094	-0.35709	-0.00012709	-0.89356	-0.00031803	355.9095379639723	61.508	0.70479	62.253	61.869	62.573	0.74504					29	13	3	0	0	0	0.69884	1	23277	23277		7.1017	0	1	3291600			60169	8;895	43897	44245	58624	58624					0.17723464916048215
VRNPRITSL	9	Unmodified	_VRNPRITSL_					0	0	0		nc|ENSG00000101639|Q8TEP8-2|CEP192;nc|ENSG00000101639|Q8TEP8-1|CEP192;ENSG00000101639|ENST00000506447|CEP192;ENST00000513432.5_1_18:13030586-13057756:+|nuORF;CEP192|p.S908L|1|0.28|ENSG00000101639|chr18:13049514-13049514|C/T|missense_variant	nc|ENSG00000101639|Q8TEP8-2|CEP192	nc|ENSG00000101639|Q8TEP8-2|CEP192	MULTI-MSMS	A375_MHC_IP_R1	1	352.94873046875	3	352.548852	1054.62473	-0.53962	-0.00019024	0.20017	7.057E-05	-0.33944	-0.00011967	352.54883856233596	29.456	0.30416	29.456	29.302	29.607	0					11	5	3	0	0	0	0.026268	1	9242	9242		61.602	33.107	1	20856000			60170	2316	43898	44246	58625	58625					0.09959942837076596
VRNPRITSL	9	Unmodified	_VRNPRITSL_					0	0	0		nc|ENSG00000101639|Q8TEP8-2|CEP192;nc|ENSG00000101639|Q8TEP8-1|CEP192;ENSG00000101639|ENST00000506447|CEP192;ENST00000513432.5_1_18:13030586-13057756:+|nuORF;CEP192|p.S908L|1|0.28|ENSG00000101639|chr18:13049514-13049514|C/T|missense_variant	nc|ENSG00000101639|Q8TEP8-2|CEP192	nc|ENSG00000101639|Q8TEP8-2|CEP192	MULTI-MSMS	A375_MHC_IP_R2	2	352.9484558105469	3	352.548852	1054.62473	-0.82193	-0.00028977	-0.085555	-3.0162E-05	-0.90749	-0.00031993	352.54878025610014	28.645	0.3005	29.343	29.183	29.484	0.69872					11	5	3	0	0	0	0.026268	1	9930	9930		61.602	32.165	1	39655000			60171	2316	43898	44246	58626	58626					0.09959942837076596
VRNSINQVV	9	Unmodified	_VRNSINQVV_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A;ENST00000576114.1_1_17:7405853-7406021:+|nuORF	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-SECPEP	A375_MHC_IP_R1	1	515.1959228515625	2	514.795998	1027.57744	-0.55414	-0.00028527	-0.29959	-0.00015423	-0.85373	-0.0004395	514.7959690636036	34.228	0.35237	34.228	34.001	34.353	0					9	6	2	0	0	0	0.61452	1	11269	11269		26.268	11.02	1	5006500			60172	8339	43899	44247	58627	58627					0.06475663566084222
VRNWHYSR	8	Unmodified	_VRNWHYSR_					0	0	0		ENST00000368346.7_1_1:155451914-155451983:-|nuORF	ENST00000368346.7_1_1:155451914-155451983:-|nuORF	ENST00000368346.7_1_1:155451914-155451983:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	373.37152099609375	3	373.19318	1116.55771	0.033623	1.2548E-05	-0.24205	-9.0331E-05	-0.20843	-7.7783E-05	373.1928419262319	26.027	0.40527	26.027	25.866	26.271	0					12	7	2	0	0	0	0.96184	1	7785	7785		18.146	7.3468	1	1875400			60173	11112	43900	44248	58628	58628					0.004093323459983367
VRPDLRQDL	9	Unmodified	_VRPDLRQDL_					0	0	0		ENSG00000132207|ENST00000251303|SLX1A;ENSG00000181625|ENST00000330181|SLX1B;ENST00000565219.1_1_16:29466524-29469442:+|nuORF	ENSG00000132207|ENST00000251303|SLX1A	ENSG00000132207|ENST00000251303|SLX1A	MULTI-MSMS	A375_MHC_IP_R1	1	371.6121826171875	3	371.212128	1110.61456	0.48574	0.00018031	0.2236	8.3003E-05	0.70934	0.00026332	371.2120248490139	37.464	0.7649	37.464	37.148	37.913	0					30	14	3	0	0	0	0.28625	1	12604	12604		31.636	18.763	1	10617000			60174	4382	43901	44249	58629	58629					0.06367335111826833
VRPDLRQDL	9	Unmodified	_VRPDLRQDL_					0	0	0		ENSG00000132207|ENST00000251303|SLX1A;ENSG00000181625|ENST00000330181|SLX1B;ENST00000565219.1_1_16:29466524-29469442:+|nuORF	ENSG00000132207|ENST00000251303|SLX1A	ENSG00000132207|ENST00000251303|SLX1A	MULTI-MSMS	A375_MHC_IP_R2	2	371.6119689941406	3	371.212128	1110.61456	0.019314	7.1698E-06	0.43088	0.00015995	0.4502	0.00016712	371.2121355652492	36.576	0.96381	37.347	36.953	37.917	0.7709					38	18	4	0	0	0	0.41856	1	13319	13319		23.801	13.65	1	8442900			60175	4382	43901	44249	58630	58630					0.06367335111826833
VRPDNTYEV	9	Unmodified	_VRPDNTYEV_					0	0	0		ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	MULTI-MSMS	A375_MHC_IP_R1	1	547.1691284179688	2	546.769645	1091.52474	-0.73699	-0.00040296	0.05924	3.2391E-05	-0.67775	-0.00037057	546.7696400090026	30.882	1.2159	30.882	30.603	31.819	0					55	23	4	0	0	0	0.04093	1	9824	9824		67.838	25.999	1	56003000			60176	8214	43902	44250	58631	58631					-0.01736339287390365
VRPDNTYEV	9	Unmodified	_VRPDNTYEV_					0	0	0		ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	MULTI-MSMS	A375_MHC_IP_R2	2	547.1694946289062	2	546.769645	1091.52474	-0.83422	-0.00045613	0.2597	0.00014199	-0.57453	-0.00031413	546.7697763012517	30.304	1.5141	31.022	30.205	31.719	0.71857					60	29	4	0	0	0	0.027818	1	10592	10592		76.825	26.892	1	54112000			60177	8214	43902	44250	58632	58632					-0.01736339287390365
VRPDTVRNL	9	Unmodified	_VRPDTVRNL_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	MULTI-MSMS	A375_MHC_IP_R1	1	357.6084899902344	3	357.208607	1068.60399	-0.19527	-6.9753E-05	-0.19745	-7.0532E-05	-0.39273	-0.00014029	357.2084969219596	25.841	0.45583	25.841	25.714	26.17	0					19	8	3	0	0	0	0.06355	1	7620	7620		59.013	30.779	1	12012000			60178	1631	43903	44251	58633	58633					0.07243352457408037
VRPDTVRNL	9	Unmodified	_VRPDTVRNL_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	MULTI-MSMS	A375_MHC_IP_R2	2	357.6081848144531	3	357.208607	1068.60399	-0.64506	-0.00023042	-0.16492	-5.891E-05	-0.80997	-0.00028933	357.20850857473147	25.154	0.6608	25.798	25.568	26.229	0.64368					24	12	3	0	0	0	0.035228	2	8386	8353;8386		70.496	34.883	1	8673700			60179	1631	43903	44251	58634;58635	58635					0.07243352457408037
VRPEVVQEI	9	Unmodified	_VRPEVVQEI_					0	0	0		nc|ENSG00000141068|Q8IVT5-2|KSR1;nc|ENSG00000141068|Q8IVT5|KSR1;ENSG00000141068|ENST00000644974|KSR1	nc|ENSG00000141068|Q8IVT5-2|KSR1	nc|ENSG00000141068|Q8IVT5-2|KSR1	MULTI-SECPEP	A375_MHC_IP_R1	1	534.6965942382812	2	534.806031	1067.59751	-0.60186	-0.00032188	-1.1706	-0.00062604	-1.7725	-0.00094792	534.8059219423739	50.15	0.30751	50.15	49.896	50.204	0					9	5	2	0	0	0	0.65623	1	17692	17692		23.79	0	1	1335300			60180	5211	43904	44252	58636	58636					0.06641414506043475
VRPEVVQEI	9	Unmodified	_VRPEVVQEI_					0	0	0		nc|ENSG00000141068|Q8IVT5-2|KSR1;nc|ENSG00000141068|Q8IVT5|KSR1;ENSG00000141068|ENST00000644974|KSR1	nc|ENSG00000141068|Q8IVT5-2|KSR1	nc|ENSG00000141068|Q8IVT5-2|KSR1	MULTI-MATCH	A375_MHC_IP_R2	2		2	534.806031	1067.59751	-1.005	-0.00053745	-0.82713	-0.00044236	-1.8321	-0.00097981	534.8057961954279	49.162	0.30463	49.919	49.741	50.046	0.75737	-0.11524	0.00016787	NaN	23.79	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1699300			60181	5211	43904	44252							0.06641414506043475
VRPGAEGS	8	Unmodified	_VRPGAEGS_					0	0	0			REV__nc|ENSG00000174963|Q8N9L1-2|ZIC4	REV__nc|ENSG00000174963|Q8N9L1-2|ZIC4	MULTI-SECPEP	A375_MHC_IP_R2	2	771.7188110351562	1	772.394793	771.387516	-0.7481	-0.00057783	0.073901	5.7081E-05	-0.6742	-0.00052075	772.3973311582597	144.76	0.1123	144.78	144.69	144.8	0.021408					4	2	2	0	0	0	0.972	1	56540	56540		0.69038	0	1	150350	+		60182	27371	43905	44253	58637	58637					-0.007322033762761748
VRPGILVLI	9	Unmodified	_VRPGILVLI_					0	0	0		ENST00000470840.5_1_9:131140285-131152010:+|nuORF;ENSG00000167118|ENST00000372853|URM1;nc|ENSG00000167118|Q9BTM9-2|URM1	ENST00000470840.5_1_9:131140285-131152010:+|nuORF	ENST00000470840.5_1_9:131140285-131152010:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	490.7364501953125	2	490.33677	978.658987	0.034709	1.7019E-05	-0.024722	-1.2122E-05	0.009987	4.897E-06	490.33667987473854	112.51	0.5625	112.51	112.28	112.84	0					25	10	3	0	0	0	0.098973	1	41243	41243		50.855	6.448	1	5332100			60183	7159	43906	44254	58638	58638					0.16880390995981998
VRPGILVLI	9	Unmodified	_VRPGILVLI_					0	0	0		ENST00000470840.5_1_9:131140285-131152010:+|nuORF;ENSG00000167118|ENST00000372853|URM1;nc|ENSG00000167118|Q9BTM9-2|URM1	ENST00000470840.5_1_9:131140285-131152010:+|nuORF	ENST00000470840.5_1_9:131140285-131152010:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	490.7364196777344	2	490.33677	978.658987	-0.3606	-0.00017682	0.18189	8.9185E-05	-0.17872	-8.7632E-05	490.3367911658199	111.4	0.66914	112.14	111.8	112.47	0.73692					28	12	3	0	0	0	0.25276	1	41968	41968		34.102	5.6156	1	6859300			60184	7159	43906	44254	58639	58639					0.16880390995981998
VRPGLRGD	8	Unmodified	_VRPGLRGD_					0	0	0		ENST00000567007.5_1_16:67226100-67226544:+|nuORF	ENST00000567007.5_1_16:67226100-67226544:+|nuORF	ENST00000567007.5_1_16:67226100-67226544:+|nuORF	MSMS	A375_MHC_IP_R2	2	435.28204345703125	2	435.251226	868.487899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.66	1	110.41	109.91	110.91	0.74684								0	0	0	0.16876	1	41379	41379		2.3027	0	1				60185	13565	43907	44255	58640	58640					0.04839453677379879
VRPGLRGD	8	Unmodified	_VRPGLRGD_					0	0	0		ENST00000567007.5_1_16:67226100-67226544:+|nuORF	ENST00000567007.5_1_16:67226100-67226544:+|nuORF	ENST00000567007.5_1_16:67226100-67226544:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	434.6430969238281	2	435.251226	868.487899	-0.12687	-5.5222E-05	0.089734	3.9057E-05	-0.037139	-1.6165E-05	435.25111073140937	110.17	1.3243	110.91	110.02	111.34	0.73692					50	25	3	0	0	0	0.972	1	41584	41584		2.3027	0	1	1841600			60186	13565	43907	44255	58641	58641					0.04839453677379879
VRPHPSRDQKR	11	Unmodified	_VRPHPSRDQKR_					0	0	0		nc|ENSG00000186090|Q70Z44-3|HTR3D;nc|ENSG00000186090|Q70Z44-2|HTR3D;ENSG00000186090|ENST00000428798|HTR3D	nc|ENSG00000186090|Q70Z44-3|HTR3D	nc|ENSG00000186090|Q70Z44-3|HTR3D	MULTI-MSMS	A375_MHC_IP_R1	1	688.7850952148438	2	688.386908	1374.75926	-0.85311	-0.00058727	-0.26123	-0.00017983	-1.1143	-0.0007671	688.3863857398279	131.5	1.0632	131.5	130.87	131.93	0					52	20	3	0	0	0	0.73189	1	50762	50762		7.1017	2.9122	1	22300000			60187	8718	43908	44256	58642	58642					0.08687396311688644
VRPKCVGSKF	10	Unmodified	_VRPKCVGSKF_					0	0	0		ENST00000373839.7_1_1:28823314-28823584:+|nuORF	ENST00000373839.7_1_1:28823314-28823584:+|nuORF	ENST00000373839.7_1_1:28823314-28823584:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	374.2659912109375	3	374.214704	1119.62228	0.41994	0.00015715	-3.2198	-0.0012049	-2.7998	-0.0010477	374.54826489195784	55.987	0.20095	55.987	55.891	56.092	0					5	3	2	0	0	0	0.93594	1	20069	20069		4.7159	0.18705	1	668760			60188	11241	43909	44257	58643	58643					0.06725771107767287
VRPLKKILL	9	Unmodified	_VRPLKKILL_					0	0	0			REV__nc|ENSG00000114374|O00507-2|USP9Y	REV__nc|ENSG00000114374|O00507-2|USP9Y	MSMS	A375_MHC_IP_R2	2	540.0004272460938	2	540.386794	1078.75904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.535	1	23.165	22.665	23.665	0.63014								0	0	0	0.15486	1	7164	7164		0	0	1		+		60189	17822	43910	44258	58644	58644					0.2228062832980413
VRPMAGRWLFV	11	Unmodified	_VRPMAGRWLFV_					0	0	0			REV__ENST00000513886.1_1_16:61684-61825:+|nuORF	REV__ENST00000513886.1_1_16:61684-61825:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	444.98443603515625	3	444.58502	1330.73323	-0.35113	-0.0001561	-0.35614	-0.00015834	-0.70727	-0.00031444	444.5845690544628	131.61	2.4408	131.79	130.88	133.32	0.18953					123	47	4	0	0	0	0.73647	1	51572	51572		1.1098	0	1	29221000	+		60190	25644	43911	44259	58645	58645					0.08109410815836782
VRPPLVTY	8	Unmodified	_VRPPLVTY_					0	0	0		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	MSMS	A375_MHC_IP_R1	1	472.6895446777344	2	472.781828	943.549102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.38	1	43.38	42.88	43.88	0								0	0	0	0.16876	1	15075	15075		19.439	0	1				60191	5067	43912	44260	58646	58646					0.07506965656796183
VRPPPARPPS	10	Unmodified	_VRPPPARPPS_					0	0	0		nc|ENSG00000146192|Q7Z6J4-2|FGD2;ENST00000487920.1_1_6:36989957-36995408:+|nuORF	nc|ENSG00000146192|Q7Z6J4-2|FGD2	nc|ENSG00000146192|Q7Z6J4-2|FGD2	MULTI-MSMS	A375_MHC_IP_R2	2	358.9246826171875	3	358.545331	1072.61416	-0.5155	-0.00018483	-0.44407	-0.00015922	-0.95957	-0.00034405	358.54522827152675	23.324	0.25142	23.954	23.828	24.079	0.63014					6	4	2	0	0	0	0.69833	1	7472	7472		7.9454	2.5427	1	2545000			60192	12606	43913	44261	58647	58647					0.08075960182645758
VRPPRPHVV	9	Unmodified	_VRPPRPHVV_					0	0	0		nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENSG00000119522|ENST00000394215|DENND1A;ENST00000473039.5_1_9:126143713-126520026:-|nuORF	nc|ENSG00000119522|Q8TEH3-5|DENND1A	nc|ENSG00000119522|Q8TEH3-5|DENND1A	MULTI-SECPEP	A375_MHC_IP_R1	1	353.2856750488281	3	352.885687	1055.63523	-0.027607	-9.7421E-06	-0.22902	-8.0818E-05	-0.25663	-9.056E-05	352.8856100293354	23.1	0.50717	23.1	22.873	23.381	0					19	9	3	0	0	0	0.58271	1	6287	6287		14.405	14.405	1	4906600			60193	3600	43914	44262	58648	58648					0.10963970282182345
VRPPRPHVV	9	Unmodified	_VRPPRPHVV_					0	0	0		nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENSG00000119522|ENST00000394215|DENND1A;ENST00000473039.5_1_9:126143713-126520026:-|nuORF	nc|ENSG00000119522|Q8TEH3-5|DENND1A	nc|ENSG00000119522|Q8TEH3-5|DENND1A	MULTI-SECPEP	A375_MHC_IP_R2	2	353.2856750488281	3	352.885687	1055.63523	-0.55363	-0.00019537	-0.056952	-2.0097E-05	-0.61058	-0.00021547	352.88563543773506	20.439	0.96509	21.05	20.499	21.464	0.61029					41	18	3	0	0	0	0.24479	1	6280	6280		62.573	56.367	1	1997100			60194	3600	43914	44262	58649	58649					0.10963970282182345
VRPQCCVL	8	Unmodified	_VRPQCCVL_					0	0	0		ENST00000379561.5_1_13:41240138-41240633:-|nuORF	ENST00000379561.5_1_13:41240138-41240633:-|nuORF	ENST00000379561.5_1_13:41240138-41240633:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	459.679931640625	2	459.238415	916.462278	-0.17311	-7.95E-05	0.48554	0.00022298	0.31243	0.00014348	459.2386313865919	70.774	0.61365	70.774	70.494	71.108	0					21	11	2	0	0	0	0.72761	1	25756	25756		26.341	3.1929	1	4932800			60195	11338	43915	44263	58650	58650					0.0007051983908468173
VRPRLLKG	8	Unmodified	_VRPRLLKG_					0	0	0			REV__ENST00000569380.5_1_16:1827100-1828231:-|nuORF	REV__ENST00000569380.5_1_16:1827100-1828231:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	938.2616577148438	1	938.625796	937.618519	-0.3663	-0.00034382	0.26727	0.00025087	-0.099031	-9.2953E-05	938.6258290476792	147.87	0.25131	147.87	147.78	148.03	0					24	9	4	0	0	0	0.77861	1	56497	56497		0	0	1	462290	+		60196	26269	43916	44264	58651	58651					0.14721469396238263
VRPRLLKG	8	Unmodified	_VRPRLLKG_					0	0	0			REV__ENST00000569380.5_1_16:1827100-1828231:-|nuORF	REV__ENST00000569380.5_1_16:1827100-1828231:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	939.0259399414062	1	938.625796	937.618519	-0.3663	-0.00034382	0.26727	0.00025087	-0.099031	-9.2953E-05	938.6258290476792	147.87	0.25131	147.87	147.78	148.03	0					24	9	4	0	0	0	0.972	1	56477	56477		0	0	1	462290	+		60197	26269	43916	44264	58652	58652					0.14721469396238263
VRPSVIQKL	9	Unmodified	_VRPSVIQKL_					0	0	0		ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	MULTI-MSMS	A375_MHC_IP_R1	1	520.7342529296875	2	520.334759	1038.65496	-0.82095	-0.00042717	-0.21634	-0.00011257	-1.0373	-0.00053974	520.334627505253	36.642	0.40663	36.642	36.439	36.845	0					17	7	3	0	0	0	0.44183	1	12267	12267		22.658	9.0432	1	6181800			60198	9414	43917	44265	58653	58653					0.13718301502285613
VRPSVIQKL	9	Unmodified	_VRPSVIQKL_					0	0	0		ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	MULTI-SECPEP	A375_MHC_IP_R2	2	520.734375	2	520.334759	1038.65496	-0.86074	-0.00044788	0.12076	6.2833E-05	-0.73999	-0.00038504	520.3347660397209	35.57	0.5063	36.333	36.081	36.587	0.76338					22	9	3	0	0	0	0.67471	1	12900	12900		22.658	4.285	1	6407200			60199	9414	43917	44265	58654	58654					0.13718301502285613
VRPVAGGVG	9	Unmodified	_VRPVAGGVG_					0	0	0			REV__ENSG00000162461|ENST00000294454|SLC25A34	REV__ENSG00000162461|ENST00000294454|SLC25A34	MSMS	A375_MHC_IP_R2	2	406.276611328125	2	406.24287	810.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.62	1	52.372	51.872	52.872	0.75225								0	0	0	0.15486	1	19429	19429		8.5933	0	1		+		60200	20258	43918	44266	58655	58655					0.05836952791435124
VRPVGDGR	8	Unmodified	_VRPVGDGR_					0	0	0			REV__ENSG00000116017|ENST00000263620|ARID3A	REV__ENSG00000116017|ENST00000263620|ARID3A	MULTI-MSMS	A375_MHC_IP_R1	1	855.5020751953125	1	855.479525	854.472249	-0.27635	-0.00023641	0.0093691	8.0151E-06	-0.26698	-0.00022839	855.4796570449441	104.07	2.0325	104.07	103.32	105.35	0					54	39	2	0	0	0	0.77797	1	38144	38144		2.3027	0	1	2474700	+		60201	17933	43919	44267	58656	58656					0.03919167160336201
VRPVGDGR	8	Unmodified	_VRPVGDGR_					0	0	0			REV__ENSG00000116017|ENST00000263620|ARID3A	REV__ENSG00000116017|ENST00000263620|ARID3A	MULTI-MSMS	A375_MHC_IP_R1	1	428.6436767578125	2	428.243401	854.472249	-0.084189	-3.6053E-05	0.1552	6.6464E-05	0.071013	3.0411E-05	428.24343192792213	104.87	2.794	104.87	102.91	105.7	0					135	54	3	0	0	0	0.77797	2	38194	38194;38395		2.3027	0	1	7449400	+		60202	17933	43919	44267	58657;58658	58657					0.03919167160336201
VRQANRPGLF	10	Unmodified	_VRQANRPGLF_					0	0	0			REV__ENSG00000171109|ENST00000471841|MFN1	REV__ENSG00000171109|ENST00000471841|MFN1	MSMS	A375_MHC_IP_R1	1	386.6123352050781	3	386.556118	1156.64652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.642	1	34.642	34.142	35.142	0								0	0	0	0.15158	1	11440	11440		8.9762	0.68981	1		+		60203	21043	43920	44268	58659	58659					0.07446747585640878
VRQITPNIQLH	11	Unmodified	_VRQITPNIQLH_					0	0	0			REV__KRT75|p.D139N|1|0.34|ENSG00000170454|chr12:52433890-52433890|C/T|missense_variant	REV__KRT75|p.D139N|1|0.34|ENSG00000170454|chr12:52433890-52433890|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	440.6576843261719	3	440.257849	1317.75172	-0.32453	-0.00014288	-0.49367	-0.00021734	-0.8182	-0.00036022	440.2578078044133	24.159	0.35621	24.159	23.991	24.347	0					14	6	3	0	0	0	0.73318	1	6820	6820		5.8681	0	1	4746200	+		60204	26873	43921	44269	58660	58660					0.10555243991393581
VRQQLQSFKDQ	11	Unmodified	_VRQQLQSFKDQ_					0	0	0			REV__nc|ENSG00000088727|Q9HAQ2-2|KIF9	REV__nc|ENSG00000088727|Q9HAQ2-2|KIF9	MULTI-MSMS	A375_MHC_IP_R1	1	459.25323486328125	3	459.58088	1375.72081	-0.37088	-0.00017045	-0.19465	-8.9456E-05	-0.56553	-0.0002599	459.58075158302853	24.478	0.65664	24.478	24.296	24.953	0					30	10	4	0	0	0	0.73715	1	7125	7125		2.084	0	1	39183000	+		60205	16887	43922	44270	58661	58661					0.04798045886514046
VRQQRRRRRRR	11	Unmodified	_VRQQRRRRRRR_					0	0	0			REV__ENST00000397992.5_1_16:72984846-73092758:-|nuORF	REV__ENST00000397992.5_1_16:72984846-73092758:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	811.7294921875	2	812.009787	1622.00502	-0.97222	-0.00078945	-2.9684	-0.0024104	-3.9406	-0.0031998	812.0074869537252	123.77	0.25377	123.77	123.64	123.89	0					6	4	2	0	0	0	1.0015	1	46259	46259		0	0	1	16275000	+		60206	24368	43923	44271	58662	58662					0.21889954004882384
VRQRIRKVLNR	11	Unmodified	_VRQRIRKVLNR_					0	0	0		ENSG00000196376|ENST00000360388|SLC35F1	ENSG00000196376|ENST00000360388|SLC35F1	ENSG00000196376|ENST00000360388|SLC35F1	MULTI-MSMS	A375_MHC_IP_R2	2	480.37921142578125	3	479.979421	1436.91643	-0.36819	-0.00017672	0.67897	0.00032589	0.31077	0.00014917	479.97961076773964	149.27	1.4013	149.29	148.32	149.72	0.01825					54	36	2	0	0	0	0.73934	1	57936	57936		0	0	1	213210			60207	9033	43924	44272	58663	58663					0.2154510092188957
VRQRIRKVLNR	11	Unmodified	_VRQRIRKVLNR_					0	0	0		ENSG00000196376|ENST00000360388|SLC35F1	ENSG00000196376|ENST00000360388|SLC35F1	ENSG00000196376|ENST00000360388|SLC35F1	MULTI-MATCH	A375_MHC_IP_R1	1		3	479.979421	1436.91643	-0.77458	-0.00037178	0.99546	0.0004778	0.22088	0.00010602	479.9797945427015	149.11	2.09	149.11	147.87	149.96	0	-0.089624	0.00017285	NaN	0	122	62	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265090			60208	9033	43924	44272							0.2154510092188957
VRQVLQNG	8	Unmodified	_VRQVLQNG_					0	0	0			REV__nc|ENSG00000088836|Q8NBS3-2|SLC4A11	REV__nc|ENSG00000088836|Q8NBS3-2|SLC4A11	MULTI-MSMS	A375_MHC_IP_R1	1	457.6643981933594	2	457.264333	912.514114	-0.13296	-6.0799E-05	0.27225	0.00012449	0.13929	6.3693E-05	457.2643529469833	104.84	4.938	104.84	103.12	108.05	0					218	96	4	0	0	0	0.77717	1	39020	39020		5.2307	0	1	9867800	+		60209	16893	43925	44273	58664	58664					0.05435722848869773
VRRAARIFL	9	Unmodified	_VRRAARIFL_					0	0	0			REV__nc|ENSG00000134571|Q14896-2|MYBPC3	REV__nc|ENSG00000134571|Q14896-2|MYBPC3	MULTI-MSMS	A375_MHC_IP_R2	2	368.6327819824219	3	367.90497	1100.69308	-0.10609	-3.9031E-05	-0.34296	-0.00012618	-0.44905	-0.00016521	367.90495790269097	24.305	0.25383	24.949	24.806	25.06	0.64368					10	4	3	0	0	0	0.68705	1	7917	7917		8.1555	2.7528	1	4258400	+		60210	18789	43926	44274	58665	58665					0.14676232207580142
VRRAGLGP	8	Unmodified	_VRRAGLGP_					0	0	0		ENST00000492321.5_1_7:44118242-44122109:-|nuORF	ENST00000492321.5_1_7:44118242-44122109:-|nuORF	ENST00000492321.5_1_7:44118242-44122109:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	413.6560363769531	2	413.256311	824.49807	0.0046028	1.9021E-06	0.015576	6.4368E-06	0.020179	8.3389E-06	413.2562256818076	132.87	1.7819	132.87	132.64	134.42	0					76	34	4	0	0	0	0.77861	1	51417	51417		0	0	1	131260000			60211	12670	43927	44275	58666	58666					0.0788006140262496
VRRHGRVPP	9	Unmodified	_VRRHGRVPP_					0	0	0		ENST00000252032.9_1_20:3362138-3388256:-|nuORF	ENST00000252032.9_1_20:3362138-3388256:-|nuORF	ENST00000252032.9_1_20:3362138-3388256:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1074.0430908203125	1	1073.64391	1072.63663	-0.23571	-0.00025307	0.098942	0.00010623	-0.13677	-0.00014684	1073.6436675759505	149.57	1.0222	149.57	148.96	149.98	0					69	41	3	0	0	0	0.77827	1	57092	57092		0	0	1	183950			60212	10207	43928	44276	58667	58667					0.10321604370960813
VRRIERRRDRY	11	Unmodified	_VRRIERRRDRY_					0	0	0		ENST00000488876.5_1_17:37814522-37819158:+|nuORF;nc|ENSG00000131748|Q14849-2|STARD3;ENSG00000131748|ENST00000336308|STARD3;ENST00000578686.1_1_17:37816548-37817339:+|nuORF;ENST00000481171.5_1_17:37816530-37818669:+|nuORF;ENST00000584850.5_1_17:37816530-37819158:+|nuORF;nc|ENSG00000131748|Q14849-3|STARD3	ENST00000488876.5_1_17:37814522-37819158:+|nuORF	ENST00000488876.5_1_17:37814522-37819158:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1765747070312	3	525.641468	1573.90257	-0.65956	-0.00034669	-0.842	-0.00044259	-1.5016	-0.00078928	525.6416210407549	72.305	0.30234	73.04	72.821	73.124	0.73525					6	5	2	0	0	0	1.0014	1	27416	27416		0.50596	0	1	671180			60213	4348	43929	44277	58668	58668					0.13857823422790716
VRRILQQVG	9	Unmodified	_VRRILQQVG_					0	0	0		HKDC1|p.L806V|1|0.22|ENSG00000156510|chr10:69265628-69265628|C/G|missense_variant	HKDC1|p.L806V|1|0.22|ENSG00000156510|chr10:69265628-69265628|C/G|missense_variant	HKDC1|p.L806V|1|0.22|ENSG00000156510|chr10:69265628-69265628|C/G|missense_variant	MSMS	A375_MHC_IP_R1	1	356.67950439453125	3	356.89273	1067.65636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.821	1	16.821	16.321	17.321	0								0	0	0	0.15486	1	3933	3933		0.26902	0	1				60214	14126	43930	44278	58669	58669					0.1252393559104803
VRRKGKHKN	9	Unmodified	_VRRKGKHKN_					0	0	0			REV__nc|ENSG00000038532|Q2KHT3-2|CLEC16A	REV__nc|ENSG00000038532|Q2KHT3-2|CLEC16A	MULTI-MSMS	A375_MHC_IP_R2	2	561.7608032226562	2	561.851973	1121.68939	-0.3958	-0.00022238	0.20431	0.00011479	-0.19149	-0.00010759	561.8518061547043	147.32	0.18521	147.34	147.27	147.45	0.019913					34	23	2	0	0	0	0.77827	1	57286	57286		0	0	1	124610	+		60215	27097	43931	44279	58670	58670					0.1334156243376583
VRRKVLKG	8	Unmodified	_VRRKVLKG_					0	0	0		nc|ENSG00000165164|Q6ZTR5-6|CFAP47;ENSG00000165164|ENST00000378653|CFAP47;nc|ENSG00000165164|Q6ZTR5-2|CFAP47;nc|ENSG00000165164|Q6ZTR5-1|CFAP47	nc|ENSG00000165164|Q6ZTR5-6|CFAP47	nc|ENSG00000165164|Q6ZTR5-6|CFAP47	MULTI-MSMS	A375_MHC_IP_R1	1	478.7294006347656	2	478.329811	954.645068	-0.81929	-0.00039189	1.3261	0.00063431	0.50681	0.00024242	478.32962462113517	147.85	0.84727	147.85	147.66	148.51	0					44	31	3	0	0	0	0.77861	1	56494	56494		0	0	1	191410			60216	6922	43932	44280	58671	58671					0.1659315828757144
VRRKVLKG	8	Unmodified	_VRRKVLKG_					0	0	0		nc|ENSG00000165164|Q6ZTR5-6|CFAP47;ENSG00000165164|ENST00000378653|CFAP47;nc|ENSG00000165164|Q6ZTR5-2|CFAP47;nc|ENSG00000165164|Q6ZTR5-1|CFAP47	nc|ENSG00000165164|Q6ZTR5-6|CFAP47	nc|ENSG00000165164|Q6ZTR5-6|CFAP47	MULTI-MSMS	A375_MHC_IP_R2	2	478.7290344238281	2	478.329811	954.645068	-0.35668	-0.00017061	0.24854	0.00011888	-0.10814	-5.1727E-05	478.3293676053458	147.91	0.49814	147.93	147.79	148.29	0.018707					38	20	3	0	0	0	0.77861	1	57473	57473		0	0	1	127220			60217	6922	43932	44280	58672	58672					0.1659315828757144
VRRNASGL	8	Unmodified	_VRRNASGL_					0	0	0		ENSG00000143850|ENST00000272203|PLEKHA6	ENSG00000143850|ENST00000272203|PLEKHA6	ENSG00000143850|ENST00000272203|PLEKHA6	MULTI-MSMS	A375_MHC_IP_R2	2	437.15673828125	2	436.756675	871.498798	-0.25509	-0.00011141	-0.082201	-3.5902E-05	-0.33729	-0.00014731	436.7565564187539	103.9	2.3384	104.67	103.07	105.41	0.76428					82	45	3	0	0	0	0.77702	1	39528	39528		5.7604	0	1	6982000			60218	5442	43933	44281	58673	58673					0.05790856051658011
VRRNASGL	8	Unmodified	_VRRNASGL_					0	0	0		ENSG00000143850|ENST00000272203|PLEKHA6	ENSG00000143850|ENST00000272203|PLEKHA6	ENSG00000143850|ENST00000272203|PLEKHA6	MULTI-MATCH	A375_MHC_IP_R1	1		2	436.756675	871.498798	-0.068391	-2.987E-05	-0.058323	-2.5473E-05	-0.12671	-5.5343E-05	436.75654612381015	104.97	0.9621	104.97	104.69	105.65	0	0.15173	1.3435E-05	NaN	5.7604	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6706900			60219	5442	43933	44281							0.05790856051658011
VRRNASGL	8	Unmodified	_VRRNASGL_					0	0	0		ENSG00000143850|ENST00000272203|PLEKHA6	ENSG00000143850|ENST00000272203|PLEKHA6	ENSG00000143850|ENST00000272203|PLEKHA6	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	436.756675	871.498798	-0.25509	-0.00011141	-0.082201	-3.5902E-05	-0.33729	-0.00014731	436.7565564187539	103.9	2.3384	104.67	103.07	105.41	0.76428	-0.15173	-7.4229E-06	NaN	5.7604	82	45	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6982000			60220	5442	43933	44281							0.05790856051658011
VRRREAVSV	9	Unmodified	_VRRREAVSV_					0	0	0			REV__ENSG00000176182|ENST00000322217|MYPOP	REV__ENSG00000176182|ENST00000322217|MYPOP	MULTI-MSMS	A375_MHC_IP_R1	1	358.28411865234375	3	357.884235	1070.63087	-0.12779	-4.5735E-05	-0.67564	-0.0002418	-0.80343	-0.00028754	357.88406554468537	27.002	0.80579	27.002	26.677	27.482	0					21	15	2	0	0	0	0.44183	1	8173	8173		22.658	4.285	1	7992400	+		60221	21391	43934	44282	58674	58674					0.09838461068602555
VRRREAVSV	9	Unmodified	_VRRREAVSV_					0	0	0			REV__ENSG00000176182|ENST00000322217|MYPOP	REV__ENSG00000176182|ENST00000322217|MYPOP	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	357.884235	1070.63087	-0.62125	-0.00022234	-0.372	-0.00013313	-0.99325	-0.00035547	357.8840921603168	26.171	0.50798	26.831	26.653	27.161	0.65992	-0.085772	0.00013324	NaN	22.658	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6041500	+		60222	21391	43934	44282							0.09838461068602555
VRRRRRRRRRH	11	Unmodified	_VRRRRRRRRRH_					0	0	0		ENST00000356978.8_1_14:90863393-90866410:+|nuORF;ENST00000447653.7_1_14:90863393-90865345:+|nuORF	ENST00000356978.8_1_14:90863393-90866410:+|nuORF	ENST00000356978.8_1_14:90863393-90866410:+|nuORF	MSMS	A375_MHC_IP_R1	1	554.091064453125	3	554.02324	1659.04789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.64	1	148.64	148.14	149.14	0								0	0	0	0.1636	1	56757	56757		0	0	1				60223	10975	43935	44283	58675	58675					0.24472768852979243
VRRRRRRRRRH	11	Unmodified	_VRRRRRRRRRH_					0	0	0		ENST00000356978.8_1_14:90863393-90866410:+|nuORF;ENST00000447653.7_1_14:90863393-90865345:+|nuORF	ENST00000356978.8_1_14:90863393-90866410:+|nuORF	ENST00000356978.8_1_14:90863393-90866410:+|nuORF	MSMS	A375_MHC_IP_R2	2	554.0907592773438	3	554.02324	1659.04789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.55	1	148.56	148.06	149.06	0.018707								0	0	0	0.1636	1	57687	57687		0	0	1				60224	10975	43935	44283	58676	58676					0.24472768852979243
VRRRRRRRRRH	11	Unmodified	_VRRRRRRRRRH_					0	0	0		ENST00000356978.8_1_14:90863393-90866410:+|nuORF;ENST00000447653.7_1_14:90863393-90865345:+|nuORF	ENST00000356978.8_1_14:90863393-90866410:+|nuORF	ENST00000356978.8_1_14:90863393-90866410:+|nuORF	MSMS	A375_MHC_IP_R2	2	554.091064453125	3	554.02324	1659.04789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.19	1	149.21	148.71	149.71	0.018707								0	0	0	0.1636	1	57913	57913		0	0	1				60225	10975	43935	44283	58677	58677					0.24472768852979243
VRRRRRRRRW	10	Unmodified	_VRRRRRRRRW_					0	0	0			REV__ENST00000303961.8_1_19:41306371-41306464:+|nuORF	REV__ENST00000303961.8_1_19:41306371-41306464:+|nuORF	MSMS	A375_MHC_IP_R2	2	518.2445068359375	3	518.32967	1551.96718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.98	1	150	149.5	150.5	0.01825								0	0	0	0.15642	1	58183	58183		0	0	1		+		60226	23450	43936	44284	58678	58678					0.2132748781009468
VRRSGVPV	8	Unmodified	_VRRSGVPV_					0	0	0		ENST00000521659.5_2_17:4858779-4858950:+|nuORF	ENST00000521659.5_2_17:4858779-4858950:+|nuORF	ENST00000521659.5_2_17:4858779-4858950:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	435.6692810058594	2	435.269419	868.524284	-0.18232	-7.9358E-05	0.060178	2.6193E-05	-0.12214	-5.3165E-05	435.26937190747026	133.82	2.0358	133.98	133.8	135.84	0.16487					100	39	5	0	0	0	0.77839	1	52622	52622		0.79363	0	1	135290000			60227	13010	43937	44285	58679	58679					0.08476330574103486
VRRWGLYL	8	Unmodified	_VRRWGLYL_					0	0	0			REV__ENSG00000139641|ENST00000394048|ESYT1	REV__ENSG00000139641|ENST00000394048|ESYT1	MULTI-SECPEP	A375_MHC_IP_R1	1	532.2134399414062	2	531.813993	1061.61343	-0.46261	-0.00024602	-1.3123	-0.0006979	-1.7749	-0.00094392	531.8134607419345	106.09	0.71409	106.09	105.6	106.32	0					19	13	2	0	0	0	0.93416	1	38957	38957		20.871	0	1	2450900	+		60228	19171	43938	44286	58680	58680					0.08509165533587293
VRRWYKQI	8	Unmodified	_VRRWYKQI_					0	0	0			REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	REV__ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	383.59661865234375	3	383.561092	1147.66145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.953	1	23.953	23.453	24.453	0								0	0	0	0.16876	1	6683	6683		6.7232	0.09279	1		+		60229	15465	43939	44287	58681	58681					0.09352239453664879
VRSDKPKLF	9	Unmodified	_VRSDKPKLF_					0	0	0		ENSG00000183291|ENST00000331835|SELENOF	ENSG00000183291|ENST00000331835|SELENOF	ENSG00000183291|ENST00000331835|SELENOF	MULTI-MSMS	A375_MHC_IP_R2	2	364.2887878417969	3	363.885353	1088.63423	-0.48805	-0.00017759	-0.20077	-7.3058E-05	-0.68882	-0.00025065	363.88518190405324	25.307	0.206	25.95	25.822	26.028	0.64368					5	3	2	0	0	0	0.073067	1	8435	8435		44.392	17.169	1	3082000			60230	8481	43940	44288	58682	58682					0.09345711122591638
VRSDPVKPLV	10	Unmodified	_VRSDPVKPLV_					0	0	0			REV__ENSG00000187741|ENST00000389301|FANCA	REV__ENSG00000187741|ENST00000389301|FANCA	MULTI-SECPEP	A375_MHC_IP_R1	1	555.916015625	2	555.337498	1108.66044	-0.90998	-0.00050534	-0.33546	-0.0001863	-1.2454	-0.00069164	555.3372090718558	149.87	0.48889	149.87	149.51	150	0					45	32	2	0	0	0	0.95034	1	57154	57154		0.40072	0	1	84607	+		60231	22042	43941	44289	58683	58683					0.11045980294079527
VRSVLSLLLLL	11	Unmodified	_VRSVLSLLLLL_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MSMS	A375_MHC_IP_R2	2	409.2432861328125	3	409.279591	1224.81694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.776	1	18.372	17.872	18.872	0.59616								0	0	0	0.1636	1	5247	5247		0	0	1		+		60232	19731	43942	44290	58684	58684					0.21352845464593884
VRTLEELLK	9	Unmodified	_VRTLEELLK_					0	0	0		ENSG00000171148|ENST00000301964|TADA3;nc|ENSG00000171148|O75528-2|TADA3	ENSG00000171148|ENST00000301964|TADA3	ENSG00000171148|ENST00000301964|TADA3	MULTI-MSMS	A375_MHC_IP_R2	2	367.6099548339844	3	367.560646	1099.66011	-0.0932	-3.4257E-05	-0.22476	-8.2613E-05	-0.31796	-0.00011687	367.56055157006705	18.905	0.48264	19.508	19.452	19.935	0.60308					21	9	4	0	0	0	0.67787	1	5834	5834		8.9762	1.8745	1	199080000			60233	7577	43943	44291	58685	58685					0.11426560574227551
VRTRQDRVF	9	Unmodified	_VRTRQDRVF_					0	0	0			REV__ENSG00000182557|ENST00000355530|SPNS3	REV__ENSG00000182557|ENST00000355530|SPNS3	MULTI-SECPEP	A375_MHC_IP_R1	1	393.2595520019531	3	392.891389	1175.65234	0.10646	4.1825E-05	0.061581	2.4195E-05	0.16804	6.602E-05	392.89136764787247	25.229	0.45742	25.229	25.104	25.562	0					22	8	3	0	0	0	0.78353	1	7471	7471		9.544	9.544	1	15694000	+		60234	21699	43944	44292	58686	58686					0.07153846097321548
VRTRQDRVF	9	Unmodified	_VRTRQDRVF_					0	0	0			REV__ENSG00000182557|ENST00000355530|SPNS3	REV__ENSG00000182557|ENST00000355530|SPNS3	MULTI-MATCH	A375_MHC_IP_R2	2		3	392.891389	1175.65234	-0.55118	-0.00021655	0.31004	0.00012181	-0.24114	-9.4742E-05	392.8914475825141	24.594	0.60868	25.237	25.06	25.668	0.64368	0.0042667	0.00019849	NaN	9.544	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12910000	+		60235	21699	43944	44292							0.07153846097321548
VRTTSQQLK	9	Unmodified	_VRTTSQQLK_					0	0	0			REV__TAS1R2|p.A269T|1|0.39|ENSG00000179002|chr1:18854665-18854665|C/T|missense_variant	REV__TAS1R2|p.A269T|1|0.39|ENSG00000179002|chr1:18854665-18854665|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	531.2085571289062	2	530.809105	1059.60366	-0.67933	-0.0003606	1.2128	0.00064379	0.53351	0.00028319	530.8095383343842	127.89	1.1694	128.16	127.56	128.73	0.26592					48	22	3	0	0	0	0.6898	1	50163	50163		7.9102	1.7044	1	13230000	+		60236	28078	43945	44293	58687	58687					0.0762393273755606
VRVGHAAI	8	Unmodified	_VRVGHAAI_					0	0	0			REV__nc|ENSG00000143493|Q9NVH2-4|INTS7	REV__nc|ENSG00000143493|Q9NVH2-4|INTS7	MULTI-MSMS	A375_MHC_IP_R1	1	411.649658203125	2	411.750862	821.487171	-0.22836	-9.4028E-05	1.5939	0.0006563	1.3656	0.00056227	411.7514002306985	141.65	0.3035	141.65	141.42	141.73	0					8	5	2	0	0	0	0.77702	1	54366	54366		5.7604	0	1	762340	+		60237	19362	43946	44294	58688	58688					0.06928659028312723
VRVGHAAI	8	Unmodified	_VRVGHAAI_					0	0	0			REV__nc|ENSG00000143493|Q9NVH2-4|INTS7	REV__nc|ENSG00000143493|Q9NVH2-4|INTS7	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	411.750862	821.487171	-0.22836	-9.4028E-05	1.5939	0.0006563	1.3656	0.00056227	411.7514002306985	141.65	0.3035	141.65	141.42	141.73	0	-0.011401	4.5852E-05	NaN	5.7604	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	762340	+		60238	19362	43946	44294							0.06928659028312723
VRVKITVKELL	11	Unmodified	_VRVKITVKELL_					0	0	0		ENSG00000214290|ENST00000610738|POU2AF3;nc|ENSG00000214290|A8K830-4|POU2AF3;nc|ENSG00000214290|A8K830-3|POU2AF3	ENSG00000214290|ENST00000610738|POU2AF3	ENSG00000214290|ENST00000610738|POU2AF3	MSMS	A375_MHC_IP_R1	1	433.44732666015625	3	433.290379	1296.84931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.8657	1	6.8657	6.3657	7.3657	0								0	0	0	0.1636	1	1564	1564		0	0	1				60239	9612	43947	44295	58689	58689					0.21275632867582317
VRVKKLKGS	9	Unmodified	_VRVKKLKGS_					0	0	0			REV__ENST00000460870.1_1_1:208383501-208390355:-|nuORF	REV__ENST00000460870.1_1_1:208383501-208390355:-|nuORF	MSMS	A375_MHC_IP_R2	2	507.8433532714844	2	507.842751	1013.67095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.445	1	19.048	18.548	19.548	0.60308								0	0	0	0.15486	1	5486	5486		0	0	1		+		60240	24971	43948	44296	58690	58690					0.16466007739199995
VRVLTVLREY	10	Unmodified	_VRVLTVLREY_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;ENST00000467173.1_1_X:41026737-41027484:+|nuORF	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MSMS	A375_MHC_IP_R1	1	624.2742309570312	2	624.377155	1246.73976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.07	1	145.07	144.57	145.57	0								0	0	0	0.15601	1	55617	55617		1.3295	0.72803	1				60241	3905	43949	44297	58691	58691					0.12625627248235105
VRVPVIVQV	9	Unmodified	_VRVPVIVQV_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	A375_MHC_IP_R1	1	505.2315979003906	2	504.831852	1007.64915	-0.49539	-0.00025009	-0.13495	-6.8128E-05	-0.63034	-0.00031822	504.83175220912744	83.943	0.60751	83.943	83.634	84.241	0					27	11	3	0	0	0	0.4261	1	30702	30702		37.974	11.09	1	4649600			60242	5371	43950	44298	58692	58692					0.14563202990609625
VRVPVIVQV	9	Unmodified	_VRVPVIVQV_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	A375_MHC_IP_R2	2	505.23150634765625	2	504.831852	1007.64915	-0.68397	-0.00034529	-0.20684	-0.00010442	-0.89081	-0.00044971	504.83172238769896	83.008	0.70495	83.748	83.344	84.049	0.73962					29	13	3	0	0	0	0.4261	1	31519	31519		37.974	11.09	1	6400800			60243	5371	43950	44298	58693	58693					0.14563202990609625
VRVRSPKSVV	10	Unmodified	_VRVRSPKSVV_					0	0	0		ENST00000413658.6_1_7:99677240-99679302:-|nuORF;ENST00000487620.1_1_7:99673178-99679302:-|nuORF	ENST00000413658.6_1_7:99677240-99679302:-|nuORF	ENST00000413658.6_1_7:99677240-99679302:-|nuORF	MSMS	A375_MHC_IP_R1	1	376.2762756347656	3	376.240018	1125.69823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.681	1	21.681	21.181	22.181	0								0	0	0	0.14953	1	5735	5735		18.721	3.4727	1				60244	11660	43951	44299	58694	58694					0.14040491279547496
VRVVRNSLR	9	Unmodified	_VRVVRNSLR_					0	0	0			REV__ENSG00000147592|ENST00000276590|LACTB2	REV__ENSG00000147592|ENST00000276590|LACTB2	MULTI-MSMS	A375_MHC_IP_R2	2	367.3000183105469	3	366.899996	1097.67816	-0.19838	-7.2785E-05	0.32825	0.00012043	0.12987	4.7649E-05	366.90011055019625	20.728	1.1161	21.339	20.803	21.919	0.61029					63	21	4	0	0	0	0.65748	1	6617	6617		10.8	0	1	8578500	+		60245	19596	43952	44300	58695	58695					0.1332274033959493
VRVYMPTL	8	Unmodified	_VRVYMPTL_					0	0	0		ENST00000561502.5_1_3:151488357-151493511:+|nuORF;ENST00000471766.1_1_3:151488357-151491499:+|nuORF	ENST00000561502.5_1_3:151488357-151493511:+|nuORF	ENST00000561502.5_1_3:151488357-151493511:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	490.1755676269531	2	489.775688	977.536823	-0.62556	-0.00030639	0.55562	0.00027213	-0.069943	-3.4256E-05	489.77596399254185	128.38	0.41006	128.62	128.4	128.81	0.23947					11	7	2	0	0	0	0.73946	1	50439	50439		23.148	5.0134	1	5462100			60246	12357	43953	44301	58696	58696					0.047156059221151736
VRWPGVKLL	9	Unmodified	_VRWPGVKLL_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-MSMS	A375_MHC_IP_R1	1	356.96221923828125	3	356.562321	1066.66514	-0.12206	-4.3524E-05	-0.13077	-4.6629E-05	-0.25284	-9.0153E-05	356.56219603154847	80.451	0.70922	80.451	80.136	80.846	0					26	13	3	0	0	0	0.062639	1	29332	29332		59.368	37.831	1	7819700			60247	5030	43954	44302	58697	58697					0.1344690922751397
VRWPGVKLL	9	Unmodified	_VRWPGVKLL_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-MSMS	A375_MHC_IP_R2	2	356.9621276855469	3	356.562321	1066.66514	-0.10328	-3.6827E-05	-0.12215	-4.3554E-05	-0.22543	-8.038E-05	356.56225533056	79.384	0.50386	80.129	79.846	80.35	0.74474					23	9	3	0	0	0	0.068071	1	30086	30086		57.249	36.835	1	7760400			60248	5030	43954	44302	58698	58698					0.1344690922751397
VRWPLRLVLLW	11	Unmodified	_VRWPLRLVLLW_					0	0	0			REV__MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant	REV__MIA3|p.P1774Afs*45|1|0.16|ENSG00000154305|chr1:222664053-222664126|CCCCCATGGGAGGCCCTGTACCACCACCCATTCGATATGGACCACCACCTCAGCTCTGCGGACCTTTTGGGCCT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	362.9255676269531	4	363.481592	1449.89726	0.13211	4.8019E-05	-0.26169	-9.5119E-05	-0.12958	-4.71E-05	363.7321683865129	47.243	0.31092	47.243	47.055	47.366	0					7	5	2	0	0	0	1.0014	1	16640	16640		0.45452	0.35968	1	505400	+		60249	19879	43955	44303	58699	58699					0.19030751578247873
VRWRMRKLKYK	11	Unmodified	_VRWRMRKLKYK_					0	0	0		nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	nc|ENSG00000136270|Q969Z0-2|TBRG4	nc|ENSG00000136270|Q969Z0-2|TBRG4	MULTI-MSMS	A375_MHC_IP_R1	1	522.3850708007812	3	521.985407	1562.93439	-0.76249	-0.00039801	0.037161	1.9397E-05	-0.72533	-0.00037861	521.9853117126704	133.56	0.91675	133.56	133.2	134.12	0					62	17	4	0	0	0	0.73934	2	51465	51465;51694		0	0	1	17863000			60250	4775	43956	44304	58700;58701	58700					0.17544099852352701
VRWRMRKLKYK	11	Unmodified	_VRWRMRKLKYK_					0	0	0		nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	nc|ENSG00000136270|Q969Z0-2|TBRG4	nc|ENSG00000136270|Q969Z0-2|TBRG4	MULTI-MSMS	A375_MHC_IP_R1	1	782.87353515625	2	782.474472	1562.93439	-0.71529	-0.0005597	0.073002	5.7122E-05	-0.64229	-0.00050258	782.9761001034518	133.55	0.91675	133.55	133.2	134.12	0					45	17	3	0	0	0	0.73924	2	51698	51468;51698		0.35063	0.35063	1	7414100			60251	4775	43956	44304	58702;58703	58703					0.17544099852352701
VRWRMRKLKYK	11	Unmodified	_VRWRMRKLKYK_					0	0	0		nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	nc|ENSG00000136270|Q969Z0-2|TBRG4	nc|ENSG00000136270|Q969Z0-2|TBRG4	MULTI-MSMS	A375_MHC_IP_R1	1	782.8739624023438	2	782.474472	1562.93439	-0.72691	-0.00056879	-0.046777	-3.6602E-05	-0.77368	-0.00060539	782.4743038887207	134.46	1.0654	134.46	134.12	135.18	0					57	20	4	0	0	0	0.73925	1	51929	51929		0.30703	0.30703	1	11401000			60252	4775	43956	44304	58704	58704					0.17544099852352701
VRWRMRKLKYK	11	Unmodified	_VRWRMRKLKYK_					0	0	0		nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	nc|ENSG00000136270|Q969Z0-2|TBRG4	nc|ENSG00000136270|Q969Z0-2|TBRG4	MULTI-MSMS	A375_MHC_IP_R2	2	782.8746337890625	2	782.474472	1562.93439	-0.9022	-0.00070595	0.3708	0.00029014	-0.5314	-0.00041581	782.4743459304144	133.55	0.9649	133.71	133.3	134.26	0.16487					40	18	3	0	0	0	0.73934	2	52462	52462;52662		0	0	1	5055100			60253	4775	43956	44304	58705;58706	58705					0.17544099852352701
VRWRMRKLKYK	11	Unmodified	_VRWRMRKLKYK_					0	0	0		nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	nc|ENSG00000136270|Q969Z0-2|TBRG4	nc|ENSG00000136270|Q969Z0-2|TBRG4	MULTI-MSMS	A375_MHC_IP_R2	2	782.873779296875	2	782.474472	1562.93439	-0.87623	-0.00068563	0.50746	0.00039707	-0.36877	-0.00028856	782.4745569166281	134.41	1.0688	134.55	134.13	135.2	0.13901					57	20	4	0	0	0	0.73934	2	52809	52809;53021		0	0	1	10657000			60254	4775	43956	44304	58707;58708	58707					0.17544099852352701
VRWRMRKLKYK	11	Unmodified	_VRWRMRKLKYK_					0	0	0		nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	nc|ENSG00000136270|Q969Z0-2|TBRG4	nc|ENSG00000136270|Q969Z0-2|TBRG4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	782.474472	1562.93439	-0.72691	-0.00056879	-0.046777	-3.6602E-05	-0.77368	-0.00060539	782.4743038887207	134.46	1.0654	134.46	134.12	135.18	0	-0.045932	-0.00029958	NaN	0.30703	57	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11401000			60255	4775	43956	44304							0.17544099852352701
VRWRMRKLKYK	11	Unmodified	_VRWRMRKLKYK_					0	0	0		nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	nc|ENSG00000136270|Q969Z0-2|TBRG4	nc|ENSG00000136270|Q969Z0-2|TBRG4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	782.474472	1562.93439	-0.71529	-0.0005597	0.073002	5.7122E-05	-0.64229	-0.00050258	782.9761001034518	133.55	0.91675	133.55	133.2	134.12	0	-0.080145	-0.00017185	NaN	0.35063	45	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7414100			60256	4775	43956	44304							0.17544099852352701
VRWVSGSH	8	Unmodified	_VRWVSGSH_					0	0	0			REV__nc|ENSG00000085415|Q96EE3|SEH1L	REV__nc|ENSG00000085415|Q96EE3|SEH1L	MULTI-MSMS	A375_MHC_IP_R1	1	464.2892761230469	2	464.243401	926.472249	-0.36176	-0.00016794	-0.75038	-0.00034836	-1.1121	-0.00051631	464.2429647322177	27.659	0.4544	27.659	27.482	27.937	0					10	8	2	0	0	0	0.75805	1	8451	8451		18.135	0	1	2328100	+		60257	16835	43957	44305	58709	58709					0.006071671603422146
VRYKVIEDY	9	Unmodified	_VRYKVIEDY_					0	0	0		nc|ENSG00000023041|Q9H6R6-2|ZDHHC6;ENSG00000023041|ENST00000369405|ZDHHC6	nc|ENSG00000023041|Q9H6R6-2|ZDHHC6	nc|ENSG00000023041|Q9H6R6-2|ZDHHC6	MULTI-SECPEP	A375_MHC_IP_R1	1	395.2925720214844	3	395.548518	1183.62372	-0.068634	-2.7148E-05	-0.015008	-5.9364E-06	-0.083642	-3.3084E-05	395.5484672977627	53.373	0.4065	53.373	53.199	53.605	0					14	7	3	0	0	0	0.76187	1	19055	19055		4.5289	0	1	1535600			60258	1071	43958	44306	58710	58710					0.03925683677516645
VRYPDRITL	9	Unmodified	_VRYPDRITL_					0	0	0		ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF	ENSG00000149923|ENST00000279387|PPP4C	ENSG00000149923|ENST00000279387|PPP4C	MULTI-MSMS	A375_MHC_IP_R1	1	378.6209716796875	3	378.220624	1131.64004	0.4057	0.00015344	0.082557	3.1225E-05	0.48826	0.00018467	378.22061562286643	51.072	0.55805	51.072	50.764	51.322	0					24	10	3	0	0	0	0.10301	1	18108	18108		50.13	26.341	1	5338900			60259	5832	43959	44307	58711	58711					0.07948809634262943
VRYPGTTRV	9	Unmodified	_VRYPGTTRV_					0	0	0		ENSG00000178498|ENST00000337737|DTX3;nc|ENSG00000178498|Q8N9I9-2|DTX3	ENSG00000178498|ENST00000337737|DTX3	ENSG00000178498|ENST00000337737|DTX3	MULTI-SECPEP	A375_MHC_IP_R1	1	525.1978759765625	2	524.79854	1047.58253	-0.732	-0.00038415	-0.50915	-0.0002672	-1.2412	-0.00065136	524.798307280726	23.965	0.30452	23.965	23.737	24.042	0					8	5	2	0	0	0	0.11849	1	6695	6695		53.404	5.0582	1	16378000			60260	8162	43960	44308	58712	58712					0.06063967428713113
VRYPGTTRV	9	Unmodified	_VRYPGTTRV_					0	0	0		ENSG00000178498|ENST00000337737|DTX3;nc|ENSG00000178498|Q8N9I9-2|DTX3	ENSG00000178498|ENST00000337737|DTX3	ENSG00000178498|ENST00000337737|DTX3	MULTI-MSMS	A375_MHC_IP_R2	2	525.197998046875	2	524.79854	1047.58253	-0.83	-0.00043558	-0.50505	-0.00026505	-1.3351	-0.00070063	524.7982848704359	23.203	0.35595	23.833	23.623	23.979	0.63014					13	6	3	0	0	0	0.084766	1	7431	7431		53.404	5.0582	1	8441900			60261	8162	43960	44308	58713	58713					0.06063967428713113
VRYPRLSPY	9	Unmodified	_VRYPRLSPY_					0	0	0			REV__ENSG00000206530|ENST00000393845|CFAP44	REV__ENSG00000206530|ENST00000393845|CFAP44	MSMS	A375_MHC_IP_R1	1	384.6171875	3	384.217102	1149.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.466	1	94.466	93.966	94.966	0								0	0	0	0.15486	1	34722	34722		2.4985	0.21571	1		+		60262	22597	43961	44309	58714	58714					0.060648269798548426
VSAAFPQAL	9	Unmodified	_VSAAFPQAL_					0	0	0			REV__nc|ENSG00000106948|Q7Z591-2|AKNA	REV__nc|ENSG00000106948|Q7Z591-2|AKNA	MULTI-MSMS	A375_MHC_IP_R1	1	452.3053894042969	2	452.25036	902.486168	-0.35146	-0.00015895	-1.1339	-0.00051282	-1.4854	-0.00067177	452.2496838713181	27.783	0.75675	27.783	27.331	28.088	0					26	14	3	0	0	0	0.53367	1	8363	8363		18.146	0.011366	1	4494500	+		60263	17471	43962	44310	58715	58715					0.031023998687601306
VSAAPDLKQK	10	Unmodified	_VSAAPDLKQK_					0	0	0			REV__MKI67|p.A2164T|1|0.05|ENSG00000148773|chr10:128105350-128105350|C/T|missense_variant	REV__MKI67|p.A2164T|1|0.05|ENSG00000148773|chr10:128105350-128105350|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	1056.2386474609375	1	1056.60479	1055.59751	0.31442	0.00033221	0.22411	0.0002368	0.53853	0.00056901	1056.6053728588524	53.907	0.30584	53.907	53.707	54.013	0					8	5	2	0	0	0	0.94516	1	19165	19165		1.4819	0	1	1202200	+		60264	19648	43963	44311	58716	58716					0.07193414506036788
VSAAPDLKQK	10	Unmodified	_VSAAPDLKQK_					0	0	0			REV__MKI67|p.A2164T|1|0.05|ENSG00000148773|chr10:128105350-128105350|C/T|missense_variant	REV__MKI67|p.A2164T|1|0.05|ENSG00000148773|chr10:128105350-128105350|C/T|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		1	1056.60479	1055.59751	-0.47864	-0.00050574	-0.50603	-0.00053468	-0.98468	-0.0010404	1056.6039322125778	52.995	0.3034	53.746	53.538	53.842	0.75105	-0.080542	-0.0002212	NaN	1.4819	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1482200	+		60265	19648	43963	44311							0.07193414506036788
VSACDLLGV	9	Unmodified	_VSACDLLGV_					0	0	0		ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-SECPEP	A375_MHC_IP_R1	1	439.12847900390625	2	438.728403	875.442254	-0.11356	-4.9823E-05	-0.21041	-9.2313E-05	-0.32397	-0.00014214	438.7282532616591	77.446	1.7801	77.446	76.776	78.556	0					50	34	2	0	0	0	0.3243	1	28276	28276		44.407	0	1	1346500			60266	4214	43964	44312	58717	58717					-0.000449526198735839
VSACWVLEMVD	11	Unmodified	_VSACWVLEMVD_					0	0	0		OR2T3|p.G157E|1|0.24|ENSG00000196539|chr1:248473820-248473820|G/A|missense_variant	OR2T3|p.G157E|1|0.24|ENSG00000196539|chr1:248473820-248473820|G/A|missense_variant	OR2T3|p.G157E|1|0.24|ENSG00000196539|chr1:248473820-248473820|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	626.6932373046875	2	626.291042	1250.56753	-0.45862	-0.00028723	0.71543	0.00044806	0.2568	0.00016083	626.7906957358147	70.855	3.0531	70.855	68.209	71.262	0					87	59	3	0	0	0	0.73078	1	25170	25170		8.1555	0.54658	1	6946900			60267	15072	43965	44313	58718	58718					-0.04773028545832858
VSADTFQKVE	10	Unmodified	_VSADTFQKVE_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-SECPEP	A375_MHC_IP_R1	1	561.6951293945312	2	562.285128	1122.5557	0.078127	4.393E-05	0.59103	0.00033233	0.66916	0.00037626	562.285543318335	44.732	0.50729	44.732	44.523	45.03	0					20	9	3	0	0	0	0.83355	1	15582	15582		12.241	7.4846	1	2536300			60268	4108	43966	44314	58719	58719					-0.0006718597312556085
VSAEEALKY	9	Unmodified	_VSAEEALKY_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	MULTI-MSMS	A375_MHC_IP_R1	1	505.66357421875	2	505.263665	1008.51278	0.041854	2.1147E-05	-0.46256	-0.00023372	-0.42071	-0.00021257	505.26342689462274	45.211	1.3166	45.211	44.878	46.195	0					65	25	5	0	0	0	0.001114	1	15756	15756		152.89	77.957	1	62032000			60269	1487	43967	44315	58720	58720					0.008860439694331035
VSAEEALKY	9	Unmodified	_VSAEEALKY_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	MULTI-MSMS	A375_MHC_IP_R2	2	505.66357421875	2	505.263665	1008.51278	-0.73276	-0.00037024	-0.20476	-0.00010346	-0.93752	-0.0004737	505.26354849092166	44.492	1.118	45.261	44.883	46.001	0.7691					60	21	4	0	0	0	0.0023519	1	16536	16536		140.63	58.743	1	63129000			60270	1487	43967	44315	58721	58721					0.008860439694331035
VSAEQQNTLE	10	Unmodified	_VSAEQQNTLE_					0	0	0			REV__ENST00000466110.5_1_2:74595806-74598423:-|nuORF	REV__ENST00000466110.5_1_2:74595806-74598423:-|nuORF	MSMS	A375_MHC_IP_R2	2	559.6897583007812	2	559.769842	1117.52513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.585	1	32.32	31.82	32.82	0.73554								0	0	0	0.15038	1	11177	11177		17.113	0.96379	1		+		60271	22544	43968	44316	58722	58722					-0.028929643581705022
VSAGIQTSF	9	Unmodified	_VSAGIQTSF_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-SECPEP	A375_MHC_IP_R1	1	455.6372985839844	2	455.23745	908.460347	-0.52337	-0.00023826	0.80376	0.0003659	0.28039	0.00012764	455.2377838940718	67.096	0.76621	67.096	66.734	67.5	0					32	14	3	0	0	0	0.074405	1	24257	24257		79.596	14.361	1	7224500			60272	2826	43969	44317	58723	58723					0.0024550562648073537
VSAIFRSNLP	10	Unmodified	_VSAIFRSNLP_					0	0	0		ENST00000469425.1_1_8:122392427-122392571:-|nuORF	ENST00000469425.1_1_8:122392427-122392571:-|nuORF	ENST00000469425.1_1_8:122392427-122392571:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	552.7132568359375	2	552.314023	1102.61349	-0.6426	-0.00035491	-1.0813	-0.00059722	-1.7239	-0.00095213	552.3134029659966	43.284	1.9226	44.057	43.167	45.089	0.7724					65	37	2	0	0	0	0.91773	1	16301	16301		15.248	1.3424	1	2484300			60273	12316	43970	44318	58724	58724					0.06629120742945815
VSAIILLLLVL	11	Unmodified	_VSAIILLLLVL_					0	0	0		nc|ENSG00000198910|P32004-3|L1CAM;nc|ENSG00000198910|P32004-2|L1CAM;ENSG00000198910|ENST00000370060|L1CAM;ENST00000491983.1_1_X:153129326-153129416:-|nuORF	nc|ENSG00000198910|P32004-3|L1CAM	nc|ENSG00000198910|P32004-3|L1CAM	MSMS	A375_MHC_IP_R2	2	583.9071655273438	2	583.909768	1165.80498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.17	1	125.46	124.96	125.96	0.2951								0	0	0	0.16302	1	48677	48677		2.9952	0	1				60274	9365	43971	44319	58725	58725					0.22871228721373882
VSAILIVVP	9	Unmodified	_VSAILIVVP_					0	0	0			REV__ENST00000375290.6_3_9:98215758-98232201:-|nuORF	REV__ENST00000375290.6_3_9:98215758-98232201:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	909.8805541992188	1	910.597181	909.589904	0.30899	0.00028136	4.178	0.0038045	4.487	0.0040859	910.5973269004462	126.81	0.25364	126.81	126.71	126.96	0					5	4	2	0	0	0	0.75466	1	48491	48491		1.8442	0	1	4857900	+		60275	21932	43972	44320	58726	58726					0.13149306976424668
VSALEKTKKKI	11	Unmodified	_VSALEKTKKKI_					0	0	0		ENSG00000187658|ENST00000409999|C5orf52	ENSG00000187658|ENST00000409999|C5orf52	ENSG00000187658|ENST00000409999|C5orf52	MULTI-SECPEP	A375_MHC_IP_R2	2	623.2998657226562	2	622.900463	1243.78637	-0.56215	-0.00035016	-0.044587	-2.7773E-05	-0.60674	-0.00037794	622.9002809864555	149.33	2.1874	149.35	147.82	150.01	0.01825					264	80	4	0	0	0	1.0014	1	58054	58054		0.30703	0.30703	1	1948200			60276	8845	43973	44321	58727	58727					0.1742306707951684
VSALLNSADL	10	Unmodified	_VSALLNSADL_					0	0	0			REV__ENSG00000173546|ENST00000308508|CSPG4	REV__ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	A375_MHC_IP_R1	1	502.1949157714844	2	501.776939	1001.53933	-0.38221	-0.00019178	0.19764	9.917E-05	-0.18457	-9.2613E-05	502.27929750333294	52.374	0.45607	52.374	52.034	52.49	0					9	8	2	0	0	0	0.57505	1	18518	18518		22.736	0	1	427530	+		60277	21229	43974	44322	58728	58728					0.038617328607642776
VSALLNSADL	10	Unmodified	_VSALLNSADL_					0	0	0			REV__ENSG00000173546|ENST00000308508|CSPG4	REV__ENSG00000173546|ENST00000308508|CSPG4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	501.776939	1001.53933	-0.38221	-0.00019178	0.19764	9.917E-05	-0.18457	-9.2613E-05	502.27929750333294	52.374	0.45607	52.374	52.034	52.49	0	0	0	NaN	22.736	9	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	427530	+		60278	21229	43974	44322							0.038617328607642776
VSAPAGGKASW	11	Unmodified	_VSAPAGGKASW_					0	0	0		ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000185033|Q9NPR2-2|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	MULTI-SECPEP	A375_MHC_IP_R2	2	516.169189453125	2	515.769448	1029.52434	-0.82934	-0.00042775	-0.73902	-0.00038116	-1.5684	-0.00080891	515.7693792815355	32.779	0.40554	33.516	33.317	33.722	0.73691					18	7	3	0	0	0	0.63837	1	11726	11726		33.821	0.37646	1	3480600			60279	8633	43975	44323	58729	58729					0.010762857834151873
VSAPEVSRW	9	Unmodified	_VSAPEVSRW_					0	0	0		ENSG00000100628|ENST00000555019|ASB2;nc|ENSG00000100628|Q96Q27-1|ASB2;ENST00000553883.1_1_14:94401004-94406176:-|nuORF	ENSG00000100628|ENST00000555019|ASB2	ENSG00000100628|ENST00000555019|ASB2	MULTI-SECPEP	A375_MHC_IP_R1	1	516.1690673828125	2	515.769448	1029.52434	-0.51673	-0.00026652	-0.58227	-0.00030031	-1.099	-0.00056683	515.7693945055125	33.522	0.35657	33.522	33.291	33.648	0					12	6	2	0	0	0	0.33896	1	10949	10949		40.239	0	1	3709500			60280	2204	43976	44324	58730	58730					0.010762857834379247
VSAPLRLQA	9	Unmodified	_VSAPLRLQA_					0	0	0		nc|ENSG00000164465|Q8N8Z6-2|DCBLD1;ENSG00000164465|ENST00000338728|DCBLD1;ENST00000528162.1_1_6:117803944-117806198:+|nuORF;DCBLD1|p.C68Gfs*21|1|0.32|ENSG00000164465|chr6:117503856-117503881|TGCGAAAAGACAATTACAGTACCAAA/-|frameshift_variant	nc|ENSG00000164465|Q8N8Z6-2|DCBLD1	nc|ENSG00000164465|Q8N8Z6-2|DCBLD1	MULTI-SECPEP	A375_MHC_IP_R1	1	478.19000244140625	2	477.790184	953.565815	-0.31154	-0.00014885	0.094568	4.5183E-05	-0.21697	-0.00010367	477.79022061219115	51.713	0.50725	51.713	51.475	51.982	0					21	9	3	0	0	0	0.070665	1	18358	18358		69.105	3.8699	1	4149100			60281	6842	43977	44325	58731	58731					0.08717466542736929
VSAPLRLQA	9	Unmodified	_VSAPLRLQA_					0	0	0		nc|ENSG00000164465|Q8N8Z6-2|DCBLD1;ENSG00000164465|ENST00000338728|DCBLD1;ENST00000528162.1_1_6:117803944-117806198:+|nuORF;DCBLD1|p.C68Gfs*21|1|0.32|ENSG00000164465|chr6:117503856-117503881|TGCGAAAAGACAATTACAGTACCAAA/-|frameshift_variant	nc|ENSG00000164465|Q8N8Z6-2|DCBLD1	nc|ENSG00000164465|Q8N8Z6-2|DCBLD1	MULTI-SECPEP	A375_MHC_IP_R2	2	478.1900939941406	2	477.790184	953.565815	-0.63325	-0.00030256	0.071968	3.4386E-05	-0.56128	-0.00026818	477.79026462444085	50.87	0.55514	51.624	51.311	51.866	0.75406					16	10	2	0	0	0	0.10103	1	19134	19134		71.922	13.243	1	3377700			60282	6842	43977	44325	58732	58732					0.08717466542736929
VSAPPRLTA	9	Unmodified	_VSAPPRLTA_					0	0	0		ENST00000485233.1_1_7:23637404-23637668:+|nuORF	ENST00000485233.1_1_7:23637404-23637668:+|nuORF	ENST00000485233.1_1_7:23637404-23637668:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	456.669189453125	2	456.269084	910.523616	-0.54092	-0.00024681	0.097639	4.455E-05	-0.44328	-0.00020226	456.2690643755475	19.505	0.45714	20.115	19.891	20.348	0.60956					18	8	3	0	0	0	0.41434	1	6000	6000		32.786	0	1	1779000			60283	12572	43978	44326	58733	58733					0.06477491134364755
VSARQFEGYV	10	Unmodified	_VSARQFEGYV_					0	0	0			REV__ENST00000474998.1_1_1:160766002-160769898:+|nuORF	REV__ENST00000474998.1_1_1:160766002-160769898:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	578.6511840820312	2	578.293288	1154.57202	0.26606	0.00015386	1.7896	0.0010349	2.0556	0.0011888	578.2934915776993	49.362	0.25507	49.362	49.184	49.439	0					7	4	2	0	0	0	0.60238	1	17469	17469		39.95	11.463	1	1818300	+		60284	25163	43979	44327	58734	58734					0.0009193998362206912
VSASIVGW	8	Unmodified	_VSASIVGW_					0	0	0			REV__ENSG00000001084|ENST00000650454|GCLC	REV__ENSG00000001084|ENST00000650454|GCLC	MULTI-MSMS	A375_MHC_IP_R2	2	410.12384033203125	2	409.723978	817.433404	-0.10437	-4.2764E-05	-0.10204	-4.1806E-05	-0.20641	-8.457E-05	409.7239143334101	36.157	0.45948	36.927	36.698	37.157	0.7709					16	8	3	0	0	0	0.77488	1	13141	13141		13.508	0	1	3887800	+		60285	16081	43980	44328	58735	58735					0.017384418059464224
VSAVFLEAKNF	11	Unmodified	_VSAVFLEAKNF_					0	0	0			REV__OR2G6|p.E196K|1|0.69|ENSG00000188558|chr1:248522232-248522232|G/A|missense_variant	REV__OR2G6|p.E196K|1|0.69|ENSG00000188558|chr1:248522232-248522232|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	408.4333801269531	3	408.892284	1223.65502	-0.4201	-0.00017177	-2.1712	-0.0008878	-2.5913	-0.0010596	408.89100552032886	26.146	0.86065	26.146	25.816	26.677	0					22	16	2	0	0	0	0.99246	1	7621	7621		4.7159	1.3963	1	3563600	+		60286	27661	43981	44329	58736	58736					0.0521425671158795
VSAVKQKSA	9	Unmodified	_VSAVKQKSA_					0	0	0		ENST00000519890.5_1_5:158126121-158500600:-|nuORF;ENST00000519739.5_1_5:158126121-158523319:-|nuORF;ENST00000522192.5_1_5:158126121-158523561:-|nuORF;nc|ENSG00000164330|Q9UH73-2|EBF1;ENST00000518836.5_1_5:158126121-158526593:-|nuORF;ENSG00000164330|ENST00000313708|EBF1	ENST00000519890.5_1_5:158126121-158500600:-|nuORF	ENST00000519890.5_1_5:158126121-158500600:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	459.674072265625	2	459.274367	916.53418	-0.58396	-0.0002682	0.19656	9.0277E-05	-0.3874	-0.00017792	459.2743617810166	34.939	0.35336	35.703	35.475	35.829	0.76338					12	6	2	0	0	0	0.4465	1	12628	12628		24.991	4.41	1	3145100			60287	6827	43982	44330	58737	58737					0.07257473788808966
VSAYLGSQPKR	11	Unmodified	_VSAYLGSQPKR_					0	0	0			REV__CEP162|p.R878Gfs*19|1|0.44|ENSG00000135315|chr6:84161790-84161790|G/-|frameshift_variant	REV__CEP162|p.R878Gfs*19|1|0.44|ENSG00000135315|chr6:84161790-84161790|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	402.9404296875	3	402.559417	1204.65642	-0.27911	-0.00011236	0.87575	0.00035254	0.59664	0.00024018	402.8946394464109	23.021	0.80924	23.021	22.673	23.483	0					33	15	4	0	0	0	0.73064	1	6291	6291		8.2864	0.34103	1	6708300	+		60288	15637	43983	44331	58738	58738					0.06227890800369096
VSCNIFRTL	9	Unmodified	_VSCNIFRTL_					0	0	0		nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E	nc|ENSG00000154001|Q16537-3|PPP2R5E	nc|ENSG00000154001|Q16537-3|PPP2R5E	MULTI-SECPEP	A375_MHC_IP_R2	2	527.1612548828125	2	526.781502	1051.54845	-0.41106	-0.00021654	-3.4699	-0.0018279	-3.881	-0.0020444	526.7792935332685	63.043	0.45652	63.785	63.634	64.091	0.74263					10	8	2	0	0	0	0.35487	1	23987	23987		29.082	0	1	414170			60289	6053	43984	44332	58739	58739					0.02473802945451098
VSCSYDDED	9	Unmodified	_VSCSYDDED_					0	0	0			REV__MCOLN2|p.S489Dfs*14|1|0.35|ENSG00000153898|chr1:84931414-84931439|ATATATATAAAAAGGCTGATGAAGGA/-|frameshift_variant	REV__MCOLN2|p.S489Dfs*14|1|0.35|ENSG00000153898|chr1:84931414-84931439|ATATATATAAAAAGGCTGATGAAGGA/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	517.558837890625	2	516.676762	1031.33897	-0.78994	-0.00040814	2.4508	0.0012663	1.6608	0.00085812	516.6772961935344	31.374	0.40887	32.092	31.923	32.332	0.71857					11	7	2	0	0	0	0.6898	1	11101	11101		7.9102	3.1541	1	1362900	+		60290	19853	43985	44333	58740	58740					-0.17544529589008562
VSCSYDDED	9	Unmodified	_VSCSYDDED_					0	0	0			REV__MCOLN2|p.S489Dfs*14|1|0.35|ENSG00000153898|chr1:84931414-84931439|ATATATATAAAAAGGCTGATGAAGGA/-|frameshift_variant	REV__MCOLN2|p.S489Dfs*14|1|0.35|ENSG00000153898|chr1:84931414-84931439|ATATATATAAAAAGGCTGATGAAGGA/-|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	516.676762	1031.33897	-0.78994	-0.00040814	2.4508	0.0012663	1.6608	0.00085812	516.6772961935344	31.374	0.40887	32.092	31.923	32.332	0.71857	0.081038	-0.00037149	NaN	7.9102	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1362900	+		60291	19853	43985	44333							-0.17544529589008562
VSDALLPSFST	11	Unmodified	_VSDALLPSFST_					0	0	0		ENSG00000136826|ENST00000374672|KLF4;nc|ENSG00000136826|O43474|KLF4;nc|ENSG00000136826|O43474-6|KLF4;nc|ENSG00000136826|O43474-5|KLF4	ENSG00000136826|ENST00000374672|KLF4	ENSG00000136826|ENST00000374672|KLF4	MULTI-MSMS	A375_MHC_IP_R2	2	569.1949462890625	2	568.795329	1135.5761	-0.30419	-0.00017302	-0.22741	-0.00012935	-0.5316	-0.00030237	568.7951091036864	78.466	0.55885	79.211	78.778	79.337	0.74474					13	10	2	0	0	0	0.28699	1	29792	29792		47.749	5.9091	1	1913300			60292	4823	43986	44334	58741	58741					0.013739846866428707
VSDALLPSFST	11	Unmodified	_VSDALLPSFST_					0	0	0		ENSG00000136826|ENST00000374672|KLF4;nc|ENSG00000136826|O43474|KLF4;nc|ENSG00000136826|O43474-6|KLF4;nc|ENSG00000136826|O43474-5|KLF4	ENSG00000136826|ENST00000374672|KLF4	ENSG00000136826|ENST00000374672|KLF4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	568.795329	1135.5761	-0.30419	-0.00017302	-0.22741	-0.00012935	-0.5316	-0.00030237	568.7951091036864	78.466	0.55885	79.211	78.778	79.337	0.74474	0.062506	-0.00014587	NaN	47.749	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1913300			60293	4823	43986	44334							0.013739846866428707
VSDASKPSW	9	Unmodified	_VSDASKPSW_					0	0	0		ENST00000466316.1_2_6:126329542-126333987:+|nuORF;nc|ENSG00000066651|Q7Z4G4-2|TRMT11;ENSG00000066651|ENST00000334379|TRMT11	ENST00000466316.1_2_6:126329542-126333987:+|nuORF	ENST00000466316.1_2_6:126329542-126333987:+|nuORF	MSMS	A375_MHC_IP_R1	1	488.65728759765625	2	488.740357	975.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.098	1	30.098	29.598	30.598	0								0	0	0	0.14792	1	9519	9519		24.991	6.6179	1				60294	1417	43987	44335	58742	58742					-0.022553958618573233
VSDDDHQLGFY	11	Unmodified	_VSDDDHQLGFY_					0	0	0			REV__PTPN3|p.R539Ifs*3|1|0.28|ENSG00000070159|chr9:109408340-109408341|-/AA|frameshift_variant	REV__PTPN3|p.R539Ifs*3|1|0.28|ENSG00000070159|chr9:109408340-109408341|-/AA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	648.6802368164062	2	648.280574	1294.5466	-0.28722	-0.0001862	-0.36849	-0.00023889	-0.65571	-0.00042508	648.2802794268423	47.438	0.60824	47.438	47.211	47.819	0					24	11	3	0	0	0	0.69231	1	16718	16718		16.149	0	1	5407300	+		60295	16567	43988	44336	58743	58743					-0.08889579329456865
VSDDDHQLGFY	11	Unmodified	_VSDDDHQLGFY_					0	0	0			REV__PTPN3|p.R539Ifs*3|1|0.28|ENSG00000070159|chr9:109408340-109408341|-/AA|frameshift_variant	REV__PTPN3|p.R539Ifs*3|1|0.28|ENSG00000070159|chr9:109408340-109408341|-/AA|frameshift_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	648.280574	1294.5466	-0.28722	-0.0001862	-0.36849	-0.00023889	-0.65571	-0.00042508	648.2802794268423	47.438	0.60824	47.438	47.211	47.819	0	-0.075586	-0.00041407	NaN	16.149	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5407300	+		60296	16567	43988	44336							-0.08889579329456865
VSDECYSQS	9	Unmodified	_VSDECYSQS_					0	0	0		ENST00000401504.2_1_6:147728373-147728715:+|nuORF	ENST00000401504.2_1_6:147728373-147728715:+|nuORF	ENST00000401504.2_1_6:147728373-147728715:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	509.59521484375	2	509.195122	1016.37569	-0.45297	-0.00023065	0.63441	0.00032304	0.18143	9.2384E-05	509.19540980196797	31.926	0.71612	31.926	31.667	32.383	0					34	13	4	0	0	0	0.22528	1	10238	10238		36.127	10.728	1	17122000			60297	11558	43989	44337	58744	58744					-0.13184232972446353
VSDEGFVENNY	11	Unmodified	_VSDEGFVENNY_					0	0	0			REV__PIK3CB|p.K793E|1|0.31|ENSG00000051382|chr3:138683726-138683726|T/C|missense_variant	REV__PIK3CB|p.K793E|1|0.31|ENSG00000051382|chr3:138683726-138683726|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	637.1717529296875	2	636.772582	1271.53061	-0.65606	-0.00041776	-0.075265	-4.7927E-05	-0.73132	-0.00046569	636.77240978611	47.447	0.66009	47.447	47.159	47.819	0					28	12	3	0	0	0	0.66366	1	16687	16687		18.373	1.2602	1	5808800	+		60298	27779	43990	44338	58745	58745					-0.09429285566375256
VSDEGFVENNY	11	Unmodified	_VSDEGFVENNY_					0	0	0			REV__PIK3CB|p.K793E|1|0.31|ENSG00000051382|chr3:138683726-138683726|T/C|missense_variant	REV__PIK3CB|p.K793E|1|0.31|ENSG00000051382|chr3:138683726-138683726|T/C|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	636.772582	1271.53061	-0.59261	-0.00037736	-0.16039	-0.00010213	-0.753	-0.00047949	636.7725156018323	46.785	0.60937	47.546	47.309	47.919	0.76128	0.049548	-5.3588E-05	NaN	18.373	30	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4806100	+		60299	27779	43990	44338							-0.09429285566375256
VSDELRQWY	9	Unmodified	_VSDELRQWY_					0	0	0		ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MSMS	A375_MHC_IP_R1	1	598.6907958984375	2	598.290745	1194.56694	-0.80111	-0.0004793	0.68269	0.00040845	-0.11842	-7.0847E-05	598.2911471217928	68.139	0.70901	68.139	67.754	68.463	0					32	13	3	0	0	0	0.0037351	1	24679	24679		137.42	104.64	1	14937000			60300	5910	43991	44339	58746	58746					-0.022563638790188634
VSDELRQWY	9	Unmodified	_VSDELRQWY_					0	0	0		ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MSMS	A375_MHC_IP_R2	2	598.6904907226562	2	598.290745	1194.56694	-0.52716	-0.0003154	-0.13407	-8.0215E-05	-0.66124	-0.00039561	598.2907105899616	67.444	0.76102	68.18	67.801	68.562	0.73631					38	14	4	0	0	0	0.0014143	1	25554	25554		149.91	115.51	1	14952000			60301	5910	43991	44339	58747	58747					-0.022563638790188634
VSDELVQQY	9	Unmodified	_VSDELVQQY_					0	0	0		ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-MSMS	A375_MHC_IP_R2	2	540.68994140625	2	540.764029	1079.5135	-1.1406	-0.0006168	0.27855	0.00015063	-0.86205	-0.00046617	540.7642116844959	60.441	0.66293	61.186	60.903	61.566	0.74503					17	12	2	0	0	0	0.070818	1	22833	22833		56.177	32.156	1	4259700			60302	2808	43992	44340	58748	58748					-0.023071613815318415
VSDESAVAFVL	11	Unmodified	_VSDESAVAFVL_					0	0	0			REV__ENSG00000159259|ENST00000314103|CHAF1B	REV__ENSG00000159259|ENST00000314103|CHAF1B	MULTI-MSMS	A375_MHC_IP_R1	1	569.1953125	2	568.795329	1135.5761	-0.19092	-0.00010859	0.11601	6.5985E-05	-0.074909	-4.2608E-05	568.7953531292513	79.086	0.45798	79.086	78.807	79.265	0					15	8	2	0	0	0	0.36362	1	28887	28887		41.84	1.8899	1	3623200	+		60303	20110	43993	44341	58749	58749					0.01373984686665608
VSDFGGIIY	9	Unmodified	_VSDFGGIIY_					0	0	0			REV__ENSG00000161594|ENST00000293303|KLHL10	REV__ENSG00000161594|ENST00000293303|KLHL10	MULTI-MSMS	A375_MHC_IP_R1	1	486.1461486816406	2	485.74765	969.480748	-0.27952	-0.00013578	-0.85513	-0.00041538	-1.1347	-0.00055115	485.74624956694163	91.617	0.75976	91.617	91.299	92.059	0					44	14	4	0	0	0	0.098973	1	33617	33617		50.855	16.753	1	10110000	+		60304	20213	43994	44342	58750	58750					-0.005213237137013493
VSDFGGIIY	9	Unmodified	_VSDFGGIIY_					0	0	0			REV__ENSG00000161594|ENST00000293303|KLHL10	REV__ENSG00000161594|ENST00000293303|KLHL10	MULTI-MSMS	A375_MHC_IP_R2	2	486.1460876464844	2	485.74765	969.480748	-0.50051	-0.00024312	-0.70566	-0.00034277	-1.2062	-0.0005859	485.746262247832	90.919	0.75967	91.653	91.211	91.97	0.7345					47	14	5	0	0	0	0.1478	1	34524	34524		42.095	15.211	1	9234800	+		60305	20213	43994	44342	58751	58751					-0.005213237137013493
VSDFGGIIY	9	Unmodified	_VSDFGGIIY_					0	0	0			REV__ENSG00000161594|ENST00000293303|KLHL10	REV__ENSG00000161594|ENST00000293303|KLHL10	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	485.74765	969.480748	-0.50051	-0.00024312	-0.70566	-0.00034277	-1.2062	-0.0005859	485.746262247832	90.919	0.75967	91.653	91.211	91.97	0.7345	0.018126	6.8574E-05	NaN	50.855	47	14	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9234800	+		60306	20213	43994	44342							-0.005213237137013493
VSDFSSVNWLA	11	Unmodified	_VSDFSSVNWLA_					0	0	0			REV__ENST00000334062.7_1_13:114748460-114748754:-|nuORF	REV__ENST00000334062.7_1_13:114748460-114748754:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	409.2678527832031	3	408.868027	1223.58225	-0.11993	-4.9038E-05	0.88809	0.00036311	0.76815	0.00031407	408.86805919715334	46.365	0.55387	46.365	45.992	46.545	0					23	10	3	0	0	0	0.71476	1	16277	16277		11.631	0	1	4033300	+		60307	23652	43995	44343	58752	58752					-0.020594970817683134
VSDGHFRSF	9	Unmodified	_VSDGHFRSF_					0	0	0			REV__ENST00000557196.1_1_14:45356671-45356932:-|nuORF	REV__ENST00000557196.1_1_14:45356671-45356932:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	527.1530151367188	2	526.251423	1050.48829	-0.49676	-0.00026142	-0.28694	-0.000151	-0.78369	-0.00041242	526.2512908255355	39.41	0.50702	39.41	39.187	39.694	0					22	9	3	0	0	0	0.63811	1	13463	13463		12.532	0	1	14615000	+		60308	26119	43996	44344	58753	58753					-0.03493171393438388
VSDGLELRLK	10	Unmodified	_VSDGLELRLK_					0	0	0		SLC25A32|p.P60L|1|0.47|ENSG00000164933|chr8:103407760-103407760|G/A|missense_variant	SLC25A32|p.P60L|1|0.47|ENSG00000164933|chr8:103407760-103407760|G/A|missense_variant	SLC25A32|p.P60L|1|0.47|ENSG00000164933|chr8:103407760-103407760|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	565.341796875	2	565.332413	1128.65027	-0.39873	-0.00022541	-0.33576	-0.00018981	-0.73448	-0.00041523	565.3322214042637	42.045	0.35725	42.819	42.659	43.016	0.77451					11	6	2	0	0	0	0.70972	1	15678	15678		13.042	4.8869	1	2984600			60309	29176	43997	44345	58754	58754					0.09109372568832441
VSDGNFSNY	9	Unmodified	_VSDGNFSNY_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-MSMS	A375_MHC_IP_R2	2	1002.81689453125	1	1002.41632	1001.40904	-0.039252	-3.9347E-05	0.22584	0.00022638	0.18658	0.00018704	1002.4161696085017	45.383	0.45657	46.148	45.846	46.303	0.76518					12	8	2	0	0	0	0.04699	1	16988	16988		65.474	23.379	1	2243600			60310	8501	43998	44346	58755	58755					-0.09160863138242803
VSDGNFSNY	9	Unmodified	_VSDGNFSNY_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-MATCH	A375_MHC_IP_R1	1		1	1002.41632	1001.40904	0.32058	0.00032136	-0.2726	-0.00027326	0.047983	4.8099E-05	1002.4159008192837	45.933	0.35613	45.933	45.738	46.094	0	-0.10736	-0.00017443	NaN	65.474	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1650300			60311	8501	43998	44346							-0.09160863138242803
VSDGVIKVF	9	Unmodified	_VSDGVIKVF_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	A375_MHC_IP_R1	1	482.67889404296875	2	482.279118	962.543683	-0.35399	-0.00017072	-0.2313	-0.00011155	-0.58529	-0.00028228	482.27895571008025	74.51	0.55739	74.51	74.197	74.754	0					17	10	2	0	0	0	0.0099737	1	27121	27121		96.367	56.417	1	1785400			60312	7732	43999	44347	58756	58756					0.06091242074319325
VSDGVIKVF	9	Unmodified	_VSDGVIKVF_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-SECPEP	A375_MHC_IP_R2	2	482.67864990234375	2	482.279118	962.543683	-0.53183	-0.00025649	-0.061842	-2.9825E-05	-0.59367	-0.00028631	482.27897059280536	73.636	0.56116	74.371	74.041	74.602	0.73541					17	10	2	0	0	0	0.14606	1	27945	27945		55.503	17.529	1	2175200			60313	7732	43999	44347	58757	58757					0.06091242074319325
VSDHDDFTV	9	Unmodified	_VSDHDDFTV_					0	0	0			REV__nc|ENSG00000135486|P09651-3|HNRNPA1	REV__nc|ENSG00000135486|P09651-3|HNRNPA1	MSMS	A375_MHC_IP_R1	1	517.660400390625	2	517.724904	1033.43525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.457	1	90.457	89.957	90.957	0								0	0	0	0.1535	1	33242	33242		15.847	1.2655	1				60314	15690	44000	44348	58758	58758					-0.08012593966759596
VSDHKHHPS	9	Unmodified	_VSDHKHHPS_					0	0	0		ENST00000459962.1_1_1:56962225-56977851:-|nuORF;ENSG00000162407|ENST00000371250|PLPP3	ENST00000459962.1_1_1:56962225-56977851:-|nuORF	ENST00000459962.1_1_1:56962225-56977851:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	522.654052734375	2	522.254497	1042.49444	-0.70582	-0.00036862	0.23886	0.00012475	-0.46696	-0.00024387	522.254509565404	85.658	0.66	85.658	85.311	85.971	0					26	12	3	0	0	0	0.44024	1	31372	31372		22.736	22.736	1	4048000			60315	6527	44001	44349	58759	58759					-0.02510653161925802
VSDHKHHPS	9	Unmodified	_VSDHKHHPS_					0	0	0		ENST00000459962.1_1_1:56962225-56977851:-|nuORF;ENSG00000162407|ENST00000371250|PLPP3	ENST00000459962.1_1_1:56962225-56977851:-|nuORF	ENST00000459962.1_1_1:56962225-56977851:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	522.6538696289062	2	522.254497	1042.49444	-0.45516	-0.00023771	0.12416	6.4843E-05	-0.331	-0.00017286	522.2544979540316	84.982	0.66236	85.718	85.372	86.034	0.73601					28	12	3	0	0	0	0.44024	1	32256	32256		22.736	22.736	1	3633300			60316	6527	44001	44349	58760	58760					-0.02510653161925802
VSDHKHHPS	9	Unmodified	_VSDHKHHPS_					0	0	0		ENST00000459962.1_1_1:56962225-56977851:-|nuORF;ENSG00000162407|ENST00000371250|PLPP3	ENST00000459962.1_1_1:56962225-56977851:-|nuORF	ENST00000459962.1_1_1:56962225-56977851:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	522.254497	1042.49444	-0.45516	-0.00023771	0.12416	6.4843E-05	-0.331	-0.00017286	522.2544979540316	84.982	0.66236	85.718	85.372	86.034	0.73601	0.029727	-8.3312E-05	NaN	22.736	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3633300			60317	6527	44001	44349							-0.02510653161925802
VSDHSGFHY	9	Unmodified	_VSDHSGFHY_					0	0	0		ENSG00000188647|ENST00000340434|PTAR1	ENSG00000188647|ENST00000340434|PTAR1	ENSG00000188647|ENST00000340434|PTAR1	MULTI-SECPEP	A375_MHC_IP_R1	1	525.1273803710938	2	524.727781	1047.44101	-0.46939	-0.0002463	-0.59725	-0.00031339	-1.0666	-0.0005597	524.727409439225	25.052	0.40442	25.052	24.953	25.357	0					12	7	3	0	0	0	0.20567	1	7261	7261		30.637	4.2953	1	5695700			60318	8921	44002	44350	58761	58761					-0.08081450664417389
VSDHSGFHY	9	Unmodified	_VSDHSGFHY_					0	0	0		ENSG00000188647|ENST00000340434|PTAR1	ENSG00000188647|ENST00000340434|PTAR1	ENSG00000188647|ENST00000340434|PTAR1	MULTI-MATCH	A375_MHC_IP_R2	2		2	524.727781	1047.44101	-0.852	-0.00044707	-0.19022	-9.9813E-05	-1.0422	-0.00054688	524.727517921712	24.503	0.55752	25.147	24.907	25.465	0.64368	0.047403	0.00031468	NaN	30.637	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3505800			60319	8921	44002	44350							-0.08081450664417389
VSDIDYRNY	9	Unmodified	_VSDIDYRNY_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.Y6402Ffs*2|1|0.34|ENSG00000183091|chr2:151492486-151492487|AT/-|frameshift_variant;NEB|p.V4554Gfs*42|1|0.12|ENSG00000183091|chr2:151562738-151562739|-/CC|frameshift_variant;NEB|p.L4555Rfs*43|1|0.12|ENSG00000183091|chr2:151562736-151562737|-/CCTGCTCT|frameshift_variant	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	A375_MHC_IP_R2	2	573.16650390625	2	572.767103	1143.51965	-0.19494	-0.00011165	0.092277	5.2853E-05	-0.10266	-5.8802E-05	572.7671572680122	42.334	1.374	43.106	42.502	43.876	0.7724					55	26	3	0	0	0	0.44024	1	15625	15625		22.736	5.6234	1	13544000			60320	8464	44003	44351	58762	58762					-0.046366431500018734
VSDKTLSFY	9	Unmodified	_VSDKTLSFY_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2;ENST00000465687.1_1_3:88367275-88367665:+|nuORF	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-SECPEP	A375_MHC_IP_R1	1	530.1954345703125	2	530.27149	1058.52843	-0.57423	-0.0003045	1.0816	0.00057352	0.50734	0.00026903	530.271726522424	60.309	0.76448	60.309	60.006	60.77	0					31	14	3	0	0	0	0.49205	1	21704	21704		21.537	9.2963	1	3048600			60321	1120	44004	44352	58763	58763					0.0015033048648547265
VSDKTLSFY	9	Unmodified	_VSDKTLSFY_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2;ENST00000465687.1_1_3:88367275-88367665:+|nuORF	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-MSMS	A375_MHC_IP_R2	2	530.1946411132812	2	530.27149	1058.52843	-1	-0.00053029	1.0328	0.00054765	0.03274	1.7361E-05	530.2715491252517	59.527	0.55632	60.274	59.996	60.553	0.74714					27	10	3	0	0	0	0.32889	1	22500	22500		28.495	4.4739	1	3183500			60322	1120	44004	44352	58764	58764					0.0015033048648547265
VSDLQLYIT	9	Unmodified	_VSDLQLYIT_					0	0	0			REV__tr|U7SLK8|U7SLK8_FUSNUPolysaccharidebiosynthesisproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01961PE=4SV=1	REV__tr|U7SLK8|U7SLK8_FUSNUPolysaccharidebiosynthesisproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01961PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	526.6869506835938	2	526.28714	1050.55973	-0.48966	-0.0002577	0.44798	0.00023577	-0.041675	-2.1933E-05	526.2872289225235	64.065	0.60712	64.065	63.786	64.393	0					27	11	4	0	0	0	0.064992	1	23175	23175		68.081	15.812	1	5993800	+		60323	28271	44005	44353	58765	58765					0.03646903520552769
VSDLTVQRL	9	Unmodified	_VSDLTVQRL_					0	0	0		ENST00000286523.9_2_14:74206798-74226821:-|nuORF	ENST00000286523.9_2_14:74206798-74226821:-|nuORF	ENST00000286523.9_2_14:74206798-74226821:-|nuORF	MSMS	A375_MHC_IP_R1	1	515.7095947265625	2	515.798206	1029.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.94	1	137.94	137.44	138.44	0								0	0	0	0.15283	1	53077	53077		16.942	3.0362	1				60324	10450	44006	44354	58766	58766					0.06825127989009161
VSDNDIRKY	9	Unmodified	_VSDNDIRKY_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-MSMS	A375_MHC_IP_R1	1	555.6827392578125	2	555.28292	1108.55129	-0.30372	-0.00016865	-0.20674	-0.0001148	-0.51045	-0.00028344	555.282734901063	21.479	0.45671	21.479	21.25	21.706	0					16	8	3	0	0	0	0.012229	1	5644	5644		110.79	49.191	1	10270000			60325	6934	44007	44355	58767	58767					0.001353496039428137
VSDNDIRKY	9	Unmodified	_VSDNDIRKY_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-SECPEP	A375_MHC_IP_R1	1	370.92474365234375	3	370.524372	1108.55129	0.56587	0.00020967	-0.28077	-0.00010403	0.2851	0.00010564	370.5242549758985	21.479	0.5587	21.479	21.199	21.757	0					31	10	4	0	0	0	0.26374	1	5621	5621		40.725	29.826	1	54427000			60326	6934	44007	44355	58768	58768					0.001353496039428137
VSDNDIRKY	9	Unmodified	_VSDNDIRKY_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-MSMS	A375_MHC_IP_R2	2	555.6825561523438	2	555.28292	1108.55129	-1.0923	-0.00060655	-0.00062556	-3.4737E-07	-1.093	-0.0006069	555.2829368488121	20.062	0.65946	20.672	20.349	21.008	0.61029					25	12	3	0	0	0	0.012229	1	6184	6184		110.79	49.191	1	5999600			60327	6934	44007	44355	58769	58769					0.001353496039428137
VSDNDIRKY	9	Unmodified	_VSDNDIRKY_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-MSMS	A375_MHC_IP_R2	2	555.6832885742188	2	555.28292	1108.55129	-1.1236	-0.00062391	0.66082	0.00036694	-0.46276	-0.00025696	555.2833998875773	22.78	0.20419	23.41	23.317	23.521	0.63014					6	3	2	0	0	0	0.18338	1	7283	7283		41.956	21.541	1	1567900			60328	6934	44007	44355	58770	58770					0.001353496039428137
VSDNDIRKY	9	Unmodified	_VSDNDIRKY_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-SECPEP	A375_MHC_IP_R2	2	370.94488525390625	3	370.524372	1108.55129	0.027659	1.0248E-05	-0.15897	-5.8904E-05	-0.13132	-4.8656E-05	370.5242987674998	20.016	0.9625	20.626	20.248	21.21	0.61029					32	18	2	0	0	0	0.076731	1	6212	6212		55.235	40.277	1	32747000			60329	6934	44007	44355	58771	58771					0.001353496039428137
VSDNDIRKY	9	Unmodified	_VSDNDIRKY_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-SECPEP	A375_MHC_IP_R2	2	370.92431640625	3	370.524372	1108.55129	-0.0016974	-6.2894E-07	-0.37812	-0.0001401	-0.37981	-0.00014073	370.5241753549515	22.815	0.91786	23.445	23.01	23.928	0.63014					19	17	2	0	0	0	0.32966	1	7272	7272		35.612	17.749	1	9181500			60330	6934	44007	44355	58772	58772					0.001353496039428137
VSDPLIGGTY	10	Unmodified	_VSDPLIGGTY_					0	0	0		ENSG00000169359|ENST00000643144|SLC33A1	ENSG00000169359|ENST00000643144|SLC33A1	ENSG00000169359|ENST00000643144|SLC33A1	MULTI-MSMS	A375_MHC_IP_R1	1	511.6634826660156	2	511.263665	1020.51278	-0.66652	-0.00034077	0.34206	0.00017488	-0.32447	-0.00016589	511.26347830194214	85.784	0.81026	85.784	85.362	86.172	0					35	15	3	0	0	0	0.0055942	1	31357	31357		134.3	74.222	1	6232000			60331	7402	44008	44356	58773	58773					0.003340439694397901
VSDPLIGGTY	10	Unmodified	_VSDPLIGGTY_					0	0	0		ENSG00000169359|ENST00000643144|SLC33A1	ENSG00000169359|ENST00000643144|SLC33A1	ENSG00000169359|ENST00000643144|SLC33A1	MULTI-SECPEP	A375_MHC_IP_R1	1	1020.8876953125	1	1021.52005	1020.51278	-0.025992	-2.6552E-05	-0.079196	-8.09E-05	-0.10519	-0.00010745	1021.519864129039	85.685	0.96306	85.685	85.311	86.274	0					54	18	4	0	0	0	0.51493	1	31296	31296		45.7	18.816	1	56797000			60332	7402	44008	44356	58774	58774					0.003340439694397901
VSDPLIGGTY	10	Unmodified	_VSDPLIGGTY_					0	0	0		ENSG00000169359|ENST00000643144|SLC33A1	ENSG00000169359|ENST00000643144|SLC33A1	ENSG00000169359|ENST00000643144|SLC33A1	MULTI-SECPEP	A375_MHC_IP_R2	2	1020.8875732421875	1	1021.52005	1020.51278	0.16176	0.00016524	-0.41932	-0.00042834	-0.25756	-0.0002631	1021.5195698121156	84.963	1.0688	85.699	85.272	86.341	0.73602					56	20	4	0	0	0	0.025144	1	32227	32227		107.19	52.413	1	55257000			60333	7402	44008	44356	58775	58775					0.003340439694397901
VSDPLIGGTYM	11	Unmodified	_VSDPLIGGTYM_					0	0	0		ENSG00000169359|ENST00000643144|SLC33A1	ENSG00000169359|ENST00000643144|SLC33A1	ENSG00000169359|ENST00000643144|SLC33A1	MULTI-MSMS	A375_MHC_IP_R2	2	576.7078247070312	2	576.783907	1151.55326	-0.13116	-7.565E-05	0.63644	0.00036709	0.50528	0.00029144	576.7839277623267	103.53	0.40582	104.3	104.14	104.55	0.76428					11	7	2	0	0	0	0.47886	1	39248	39248		32.786	3.7041	1	874870			60334	7402	44009	44357	58776	58776					-0.01645357702432193
VSDPLSDLKW	10	Unmodified	_VSDPLSDLKW_					0	0	0		ENST00000553730.5_1_14:102276279-102348623:+|nuORF;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C	ENST00000553730.5_1_14:102276279-102348623:+|nuORF	ENST00000553730.5_1_14:102276279-102348623:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	580.7034912109375	2	580.303321	1158.59209	-0.17086	-9.9151E-05	0.81071	0.00047046	0.63985	0.0003713	580.3034106657686	104.41	0.50846	104.41	104.18	104.69	0					21	9	3	0	0	0	0.22266	1	38361	38361		70.929	39.66	1	2022200			60335	1672	44010	44358	58777	58777					0.019136909235839994
VSDPLSDLKW	10	Unmodified	_VSDPLSDLKW_					0	0	0		ENST00000553730.5_1_14:102276279-102348623:+|nuORF;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C	ENST00000553730.5_1_14:102276279-102348623:+|nuORF	ENST00000553730.5_1_14:102276279-102348623:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	580.7029418945312	2	580.303321	1158.59209	-0.25684	-0.00014905	0.10552	6.1232E-05	-0.15133	-8.7815E-05	580.3031528958747	103.61	0.60983	104.37	104.04	104.65	0.76428					16	11	2	0	0	0	0.16019	1	39252	39252		53.317	23.476	1	1782500			60336	1672	44010	44358	58778	58778					0.019136909235839994
VSDPNLIHV	9	Unmodified	_VSDPNLIHV_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	A375_MHC_IP_R1	1	497.67132568359375	2	497.271824	992.529095	-0.44015	-0.00021887	0.51852	0.00025784	0.078368	3.897E-05	497.27168636044684	58.894	1.5239	58.894	57.873	59.397	0					41	29	2	0	0	0	0.070818	1	20868	20868		56.177	12.319	1	13448000			60337	3337	44011	44359	58779	58779					0.03253169926188093
VSDPNLIHV	9	Unmodified	_VSDPNLIHV_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	A375_MHC_IP_R2	2	497.67095947265625	2	497.271824	992.529095	-0.77467	-0.00038522	0.42715	0.00021241	-0.34753	-0.00017282	497.27163764298655	58.086	1.6272	58.835	57.711	59.338	0.74894					45	31	2	0	0	0	0.070818	1	21635	21635		56.177	7.8312	1	12488000			60338	3337	44011	44359	58780	58780					0.03253169926188093
VSDPSSPQY	9	Unmodified	_VSDPSSPQY_					0	0	0		ENSG00000166340|ENST00000299427|TPP1;ENST00000524903.1_1_11:6639992-6640524:-|nuORF;ENST00000531754.1_1_11:6639992-6640658:-|nuORF;ENST00000428886.6_1_11:6638445-6640631:-|nuORF	ENSG00000166340|ENST00000299427|TPP1	ENSG00000166340|ENST00000299427|TPP1	MULTI-MSMS	A375_MHC_IP_R1	1	490.6220397949219	2	490.221997	978.429441	-0.32904	-0.0001613	-0.048815	-2.393E-05	-0.37785	-0.00018523	490.22197301421414	31.895	1.574	31.895	31.616	33.19	0					65	30	5	0	0	0	0.0085749	2	10212	10212;10298		171.09	92.937	1	427980000			60339	7060	44012	44360	58781;58782	58781					-0.060636924784148505
VSDPSSPQY	9	Unmodified	_VSDPSSPQY_					0	0	0		ENSG00000166340|ENST00000299427|TPP1;ENST00000524903.1_1_11:6639992-6640524:-|nuORF;ENST00000531754.1_1_11:6639992-6640658:-|nuORF;ENST00000428886.6_1_11:6638445-6640631:-|nuORF	ENSG00000166340|ENST00000299427|TPP1	ENSG00000166340|ENST00000299427|TPP1	MULTI-SECPEP	A375_MHC_IP_R1	1	490.6218566894531	2	490.221997	978.429441	-0.50781	-0.00024894	0.32663	0.00016012	-0.18118	-8.8818E-05	490.2220748747765	23.372	0.30663	23.372	23.227	23.533	0					13	5	3	0	0	0	0.46045	1	6426	6426		29.082	7.3349	1	6309000			60340	7060	44012	44360	58783	58783					-0.060636924784148505
VSDPSSPQY	9	Unmodified	_VSDPSSPQY_					0	0	0		ENSG00000166340|ENST00000299427|TPP1;ENST00000524903.1_1_11:6639992-6640524:-|nuORF;ENST00000531754.1_1_11:6639992-6640658:-|nuORF;ENST00000428886.6_1_11:6638445-6640631:-|nuORF	ENSG00000166340|ENST00000299427|TPP1	ENSG00000166340|ENST00000299427|TPP1	MULTI-SECPEP	A375_MHC_IP_R1	1	979.04833984375	1	979.436717	978.429441	0.12518	0.0001226	-0.29812	-0.00029199	-0.17294	-0.00016939	979.4364447086601	31.895	1.9825	31.895	31.565	33.547	0					112	38	6	0	0	0	0.011308	1	10413	10413		117.76	49.68	1	795280000			60341	7060	44012	44360	58784	58784					-0.060636924784148505
VSDPSSPQY	9	Unmodified	_VSDPSSPQY_					0	0	0		ENSG00000166340|ENST00000299427|TPP1;ENST00000524903.1_1_11:6639992-6640524:-|nuORF;ENST00000531754.1_1_11:6639992-6640658:-|nuORF;ENST00000428886.6_1_11:6638445-6640631:-|nuORF	ENSG00000166340|ENST00000299427|TPP1	ENSG00000166340|ENST00000299427|TPP1	MULTI-MSMS	A375_MHC_IP_R2	2	490.6213073730469	2	490.221997	978.429441	-0.57197	-0.00028039	0.43755	0.0002145	-0.13442	-6.5896E-05	490.2219886993761	31.333	1.5787	32.051	31.77	33.348	0.71857					94	30	5	0	0	0	0.0028938	3	11032	11015;11032;11085		157.8	89.714	1	359130000			60342	7060	44012	44360	58785;58786;58787	58786					-0.060636924784148505
VSDPSSPQY	9	Unmodified	_VSDPSSPQY_					0	0	0		ENSG00000166340|ENST00000299427|TPP1;ENST00000524903.1_1_11:6639992-6640524:-|nuORF;ENST00000531754.1_1_11:6639992-6640658:-|nuORF;ENST00000428886.6_1_11:6638445-6640631:-|nuORF	ENSG00000166340|ENST00000299427|TPP1	ENSG00000166340|ENST00000299427|TPP1	MULTI-SECPEP	A375_MHC_IP_R2	2	490.9823913574219	2	490.221997	978.429441	-0.89349	-0.00043801	0.46877	0.0002298	-0.42472	-0.00020821	490.22216698222735	22.527	0.5631	23.157	22.856	23.42	0.63014					17	10	2	0	0	0	0.56537	1	7158	7158		22.736	2.2827	1	1890300			60343	7060	44012	44360	58788	58788					-0.060636924784148505
VSDPSSPQY	9	Unmodified	_VSDPSSPQY_					0	0	0		ENSG00000166340|ENST00000299427|TPP1;ENST00000524903.1_1_11:6639992-6640524:-|nuORF;ENST00000531754.1_1_11:6639992-6640658:-|nuORF;ENST00000428886.6_1_11:6638445-6640631:-|nuORF	ENSG00000166340|ENST00000299427|TPP1	ENSG00000166340|ENST00000299427|TPP1	MULTI-SECPEP	A375_MHC_IP_R2	2	979.0475463867188	1	979.436717	978.429441	-0.038031	-3.7249E-05	-0.29869	-0.00029255	-0.33672	-0.0003298	979.4364393996112	31.382	2.6963	32.101	31.77	34.466	0.71857					112	52	5	0	0	0	9.5655E-14	1	11039	11039		187.3	112.37	1	682030000			60344	7060	44012	44360	58789	58789					-0.060636924784148505
VSDPTSGLDF	10	Unmodified	_VSDPTSGLDF_					0	0	0		DENND1B|p.T739Ifs*11|1|0.41|ENSG00000213047|chr1:197510572-197510572|G/-|frameshift_variant;ENSG00000213047|ENST00000620048|DENND1B	DENND1B|p.T739Ifs*11|1|0.41|ENSG00000213047|chr1:197510572-197510572|G/-|frameshift_variant	DENND1B|p.T739Ifs*11|1|0.41|ENSG00000213047|chr1:197510572-197510572|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	518.6529541015625	2	519.242929	1036.47131	-0.58267	-0.00030255	-0.20484	-0.00010636	-0.78751	-0.00040891	519.242783482145	87.374	0.76445	87.374	87.034	87.798	0					33	14	3	0	0	0	0.24752	1	31998	31998		38.176	29.43	1	8466200			60345	733	44013	44361	58790	58790					-0.04547136789915385
VSDPTSGLDF	10	Unmodified	_VSDPTSGLDF_					0	0	0		DENND1B|p.T739Ifs*11|1|0.41|ENSG00000213047|chr1:197510572-197510572|G/-|frameshift_variant;ENSG00000213047|ENST00000620048|DENND1B	DENND1B|p.T739Ifs*11|1|0.41|ENSG00000213047|chr1:197510572-197510572|G/-|frameshift_variant	DENND1B|p.T739Ifs*11|1|0.41|ENSG00000213047|chr1:197510572-197510572|G/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	518.9949340820312	2	519.242929	1036.47131	-0.54909	-0.00028511	0.23224	0.00012059	-0.31685	-0.00016452	519.2429330573295	86.79	0.71201	87.523	87.1	87.812	0.733					35	13	3	0	0	0	0.19943	1	33071	33071		60.074	41.928	1	13500000			60346	733	44013	44361	58791	58791					-0.04547136789915385
VSDPVGVLY	9	Unmodified	_VSDPVGVLY_					0	0	0		nc|ENSG00000050130|Q9P055-2|JKAMP;nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	MULTI-SECPEP	A375_MHC_IP_R1	1	475.15496826171875	2	474.755475	947.496398	-0.52957	-0.00025142	0.1176	5.5834E-05	-0.41197	-0.00019558	474.75544548226236	91.589	0.75806	91.589	91.249	92.007	0					39	14	4	0	0	0	0.033126	1	33603	33603		85.357	38.436	1	12453000			60347	1227	44014	44362	58792	58792					0.020549628033336376
VSDPVGVLY	9	Unmodified	_VSDPVGVLY_					0	0	0		nc|ENSG00000050130|Q9P055-2|JKAMP;nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	MULTI-SECPEP	A375_MHC_IP_R2	2	474.7057800292969	2	474.755475	947.496398	-0.44335	-0.00021048	-0.28881	-0.00013712	-0.73216	-0.0003476	474.75524050195094	90.859	0.7598	91.593	91.261	92.021	0.7345					41	14	4	0	0	0	0.033126	1	34581	34581		97.075	57.117	1	13472000			60348	1227	44014	44362	58793	58793					0.020549628033336376
VSDRFGQRF	9	Unmodified	_VSDRFGQRF_					0	0	0		SLC22A10|p.R172Q|1|0.47|ENSG00000184999|chr11:63297311-63297311|G/A|missense_variant	SLC22A10|p.R172Q|1|0.47|ENSG00000184999|chr11:63297311-63297311|G/A|missense_variant	SLC22A10|p.R172Q|1|0.47|ENSG00000184999|chr11:63297311-63297311|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	556.1326293945312	2	556.285797	1110.55704	-0.83312	-0.00046345	2.417	0.0013446	1.5839	0.0008811	556.2881204283316	39.419	0.2529	40.194	40.067	40.32	0.77451					6	4	2	0	0	0	0.69507	1	14596	14596		13.906	3.0821	1	828170			60349	29171	44015	44363	58794	58794					0.00618492906278334
VSDRVTVLY	9	Unmodified	_VSDRVTVLY_					0	0	0		ENST00000557584.5_1_14:74417012-74426158:+|nuORF;nc|ENSG00000119723|Q9Y2Z9-2|COQ6;nc|ENSG00000119723|Q9Y2Z9-3|COQ6;ENSG00000119723|ENST00000334571|COQ6;ENST00000556300.6_1_14:74417008-74425067:+|nuORF	ENST00000557584.5_1_14:74417012-74426158:+|nuORF;ENST00000556300.6_1_14:74417008-74425067:+|nuORF	ENST00000557584.5_1_14:74417012-74426158:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	526.69287109375	2	526.292756	1050.57096	-0.551	-0.00028999	1.2705	0.00066866	0.71951	0.00037867	526.2936415576967	55.378	0.96481	56.129	55.626	56.591	0.75075					46	17	4	0	0	0	0.20451	1	21012	21012		41.956	14.327	1	24349000			60350	13454;13439	44016	44364	58795	58795					0.04769725614710296
VSDRYRFLY	9	Unmodified	_VSDRYRFLY_					0	0	0		ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	MULTI-MSMS	A375_MHC_IP_R1	1	407.28033447265625	3	406.880379	1217.61931	-0.23795	-9.6818E-05	0.51088	0.00020787	0.27292	0.00011105	406.8805150454608	54.761	0.50861	54.761	54.467	54.975	0					14	9	2	0	0	0	0.20295	1	19568	19568		37.771	37.771	1	2866500			60351	7382	44017	44365	58796	58796					0.01920219254634503
VSDRYRFLY	9	Unmodified	_VSDRYRFLY_					0	0	0		ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	MULTI-MSMS	A375_MHC_IP_R2	2	407.28033447265625	3	406.880379	1217.61931	-0.36802	-0.00014974	0.14199	5.7772E-05	-0.22604	-9.197E-05	406.8803762222122	53.936	0.51255	54.687	54.454	54.967	0.75105					13	9	2	0	0	0	0.55601	1	20390	20390		17.049	17.049	1	2152700			60352	7382	44017	44365	58797	58797					0.01920219254634503
VSDSAKHFV	9	Unmodified	_VSDSAKHFV_					0	0	0			REV__nc|ENSG00000128815|Q6ZS81-5|WDFY4	REV__nc|ENSG00000128815|Q6ZS81-5|WDFY4	MULTI-MSMS	A375_MHC_IP_R2	2	495.18170166015625	2	495.256174	988.497795	-0.81488	-0.00040358	-0.71197	-0.00035261	-1.5269	-0.00075618	495.2556176602316	60.047	0.45541	60.794	60.501	60.957	0.74714					15	8	3	0	0	0	0.46038	1	22669	22669		21.747	4.8044	1	2188200	+		60353	18469	44018	44366	58798	58798					0.0030859689210274155
VSDSFSSSSL	10	Unmodified	_VSDSFSSSSL_					0	0	0			REV__CARD10|p.S571F|1|0.26|ENSG00000100065|chr22:37502677-37502677|G/A|missense_variant	REV__CARD10|p.S571F|1|0.26|ENSG00000100065|chr22:37502677-37502677|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	508.1402893066406	2	508.232561	1014.45057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.436	1	96.187	95.687	96.687	0.75045								0	0	0	0.15158	1	36253	36253		14.838	1.3304	1		+		60354	15575	44019	44367	58799	58799					-0.056077271695585296
VSDSKQFTY	9	Unmodified	_VSDSKQFTY_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-SECPEP	A375_MHC_IP_R1	1	538.1586303710938	2	537.758746	1073.50294	-0.86695	-0.00046621	0.24138	0.0001298	-0.62557	-0.00033641	537.7589155843975	32.391	1.0121	32.391	32.127	33.14	0					59	19	5	0	0	0	0.011204	1	10408	10408		124.95	75.399	1	186150000			60355	1647	44020	44368	58800	58800					-0.03087144035930578
VSDSKQFTY	9	Unmodified	_VSDSKQFTY_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	A375_MHC_IP_R2	2	538.15869140625	2	537.758746	1073.50294	-0.88432	-0.00047555	0.19634	0.00010559	-0.68797	-0.00036996	537.7589057765791	31.695	0.81413	32.432	32.146	32.96	0.73692					57	15	5	0	0	0	0.009815	2	11183	11183;11408		114.5	64.942	1	191950000			60356	1647	44020	44368	58801;58802	58801					-0.03087144035930578
VSDSKQFTYY	10	Unmodified	_VSDSKQFTYY_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	A375_MHC_IP_R1	1	619.6902465820312	2	619.290411	1236.56627	0.17685	0.00010952	-0.66034	-0.00040894	-0.48349	-0.00029942	619.2900158075835	44.793	0.66093	44.793	44.471	45.132	0					30	12	3	0	0	0	0.011463	1	15637	15637		111.31	77.864	1	6487900			60357	1647	44021	44369	58803	58803					-0.04255203318689382
VSDSKQFTYY	10	Unmodified	_VSDSKQFTYY_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	A375_MHC_IP_R2	2	619.6900634765625	2	619.290411	1236.56627	-0.56258	-0.0003484	-0.21572	-0.00013359	-0.77829	-0.00048199	619.2902956840525	44.14	0.60768	44.909	44.631	45.239	0.7691					27	11	3	0	0	0	0.011463	1	16435	16435		111.31	77.864	1	8343300			60358	1647	44021	44369	58804	58804					-0.04255203318689382
VSDSLQYRY	9	Unmodified	_VSDSLQYRY_					0	0	0		ENSG00000185448|ENST00000346193|FAM47A	ENSG00000185448|ENST00000346193|FAM47A	ENSG00000185448|ENST00000346193|FAM47A	MULTI-MSMS	A375_MHC_IP_R1	1	565.7323608398438	2	565.77747	1129.54039	-0.21868	-0.00012373	-0.1366	-7.7288E-05	-0.35529	-0.00020101	565.7774090885265	42.629	0.91235	42.629	42.285	43.197	0					52	17	4	0	0	0	0.55471	1	14945	14945		17.113	0.96379	1	48893000			60359	8667	44022	44370	58805	58805					-0.019200527703105763
VSDSSRYSY	9	Unmodified	_VSDSSRYSY_					0	0	0			REV__nc|ENSG00000151914|Q03001-8|DST;REV__nc|ENSG00000151914|Q03001-3|DST	REV__nc|ENSG00000151914|Q03001-8|DST	MSMS	A375_MHC_IP_R1	1	532.1876831054688	2	532.238178	1062.4618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.066	1	26.066	25.566	26.566	0								0	0	0	0.15486	1	7712	7712		12.532	2.3482	1		+		60360	27289;27288	44023	44371	58806	58806					-0.0669290507541973
VSDSYCREK	9	Unmodified	_VSDSYCREK_					0	0	0		ENST00000495983.1_1_9:130670673-130672537:-|nuORF;ENSG00000136840|ENST00000335791|ST6GALNAC4	ENST00000495983.1_1_9:130670673-130672537:-|nuORF	ENST00000495983.1_1_9:130670673-130672537:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	545.1483154296875	2	543.747856	1085.48116	-0.82421	-0.00044816	-0.54882	-0.00029842	-1.373	-0.00074658	543.7479431069008	31.892	0.71054	32.629	32.249	32.96	0.73691					56	13	6	0	0	0	0.55818	1	11231	11231		16.942	3.3274	1	22275000			60361	4827	44024	44372	58807	58807					-0.058162720561767856
VSDTEQYGKEW	11	Unmodified	_VSDTEQYGKEW_					0	0	0			REV__nc|ENSG00000135124|Q99571-3|P2RX4	REV__nc|ENSG00000135124|Q99571-3|P2RX4	MULTI-MSMS	A375_MHC_IP_R1	1	671.700439453125	2	671.301507	1340.58846	-0.78784	-0.00052888	-0.18242	-0.00012246	-0.97025	-0.00065133	671.30142175766	31.034	0.45687	31.034	30.754	31.211	0					18	8	3	0	0	0	0.33856	1	9939	9939		43.772	0	1	4820700	+		60362	18826	44025	44373	58808	58808					-0.06821023640964086
VSDTEQYGKEW	11	Unmodified	_VSDTEQYGKEW_					0	0	0			REV__nc|ENSG00000135124|Q99571-3|P2RX4	REV__nc|ENSG00000135124|Q99571-3|P2RX4	MULTI-MSMS	A375_MHC_IP_R2	2	671.7012939453125	2	671.301507	1340.58846	-0.76483	-0.00051343	-0.75256	-0.00050519	-1.5174	-0.0010186	671.30117724072	30.454	0.60861	31.172	30.759	31.367	0.71857					21	11	3	0	0	0	0.33856	1	10728	10728		43.772	0	1	3621700	+		60363	18826	44025	44373	58809	58809					-0.06821023640964086
VSDTEQYGKEW	11	Unmodified	_VSDTEQYGKEW_					0	0	0			REV__nc|ENSG00000135124|Q99571-3|P2RX4	REV__nc|ENSG00000135124|Q99571-3|P2RX4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	671.301507	1340.58846	-0.78784	-0.00052888	-0.18242	-0.00012246	-0.97025	-0.00065133	671.30142175766	31.034	0.45687	31.034	30.754	31.211	0	-0.069325	0.00031802	NaN	43.772	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4820700	+		60364	18826	44025	44373							-0.06821023640964086
VSDTEQYGKEW	11	Unmodified	_VSDTEQYGKEW_					0	0	0			REV__nc|ENSG00000135124|Q99571-3|P2RX4	REV__nc|ENSG00000135124|Q99571-3|P2RX4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	671.301507	1340.58846	-0.76483	-0.00051343	-0.75256	-0.00050519	-1.5174	-0.0010186	671.30117724072	30.454	0.60861	31.172	30.759	31.367	0.71857	0.069325	-0.00044745	NaN	43.772	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3621700	+		60365	18826	44025	44373							-0.06821023640964086
VSDVELVQL	9	Unmodified	_VSDVELVQL_					0	0	0			REV__ENSG00000133980|ENST00000256362|VRTN	REV__ENSG00000133980|ENST00000256362|VRTN	MULTI-MSMS	A375_MHC_IP_R2	2	1001.9515380859375	1	1001.55135	1000.54408	0.076435	7.6554E-05	0.15518	0.00015542	0.23161	0.00023197	1001.551205673549	104.83	0.76229	105.59	105.26	106.02	0.76308					29	14	3	0	0	0	0.29981	1	39801	39801		30.637	0	1	17123000	+		60366	18744	44026	44374	58810	58810					0.04382617003534506
VSDVELVQL	9	Unmodified	_VSDVELVQL_					0	0	0			REV__ENSG00000133980|ENST00000256362|VRTN	REV__ENSG00000133980|ENST00000256362|VRTN	MULTI-MATCH	A375_MHC_IP_R1	1		1	1001.55135	1000.54408	0.32836	0.00032887	0.47627	0.00047701	0.80464	0.00080589	1001.5512889346844	105.72	0.7598	105.72	105.35	106.11	0	0.061968	0.00020168	NaN	30.637	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15673000	+		60367	18744	44026	44374							0.04382617003534506
VSDVELVQL	9	Unmodified	_VSDVELVQL_					0	0	0			REV__ENSG00000133980|ENST00000256362|VRTN	REV__ENSG00000133980|ENST00000256362|VRTN	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	1001.55135	1000.54408	0.076435	7.6554E-05	0.15518	0.00015542	0.23161	0.00023197	1001.551205673549	104.83	0.76229	105.59	105.26	106.02	0.76308	-0.061968	-0.00011991	NaN	30.637	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17123000	+		60368	18744	44026	44374							0.04382617003534506
VSDYLRQSY	9	Unmodified	_VSDYLRQSY_					0	0	0		ENSG00000189079|ENST00000334344|ARID2;ARID2|p.G1450Dfs*3|1|0.36|ENSG00000189079|chr12:45852471-45852471|G/-|frameshift_variant;ARID2|p.T1506Qfs*10|1|0.88|ENSG00000189079|chr12:45852638-45852638|T/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ARID2|p.T1216Sfs*27|1|0.32|ENSG00000189079|chr12:45851770-45851770|C/-|frameshift_variant;ARID2|p.V1265Efs*22|1|0.07|ENSG00000189079|chr12:45851916-45851940|GTCATGGAGAACCCGTCCTGCCGAC/-|frameshift_variant;ARID2|p.M452Cfs*6|1|0.1|ENSG00000189079|chr12:45839348-45839382|TTCTATGGATATTCAGATGTTTGGCCCTGATGCAC/-|frameshift_variant	ENSG00000189079|ENST00000334344|ARID2	ENSG00000189079|ENST00000334344|ARID2	MULTI-MSMS	A375_MHC_IP_R2	2	565.7318115234375	2	565.77747	1129.54039	-0.39881	-0.00022563	-0.17068	-9.6565E-05	-0.56948	-0.0003222	565.7773994436479	41.947	0.91977	42.722	42.3	43.22	0.77451					47	17	4	0	0	0	1.633E-06	2	15627	15627;15730		211.85	119.36	1	55614000			60369	8957	44027	44375	58811;58812	58811					-0.019200527703333137
VSEEDVSSRY	10	Unmodified	_VSEEDVSSRY_					0	0	0		ENSG00000177425|ENST00000328827|PAWR	ENSG00000177425|ENST00000328827|PAWR	ENSG00000177425|ENST00000328827|PAWR	MULTI-SECPEP	A375_MHC_IP_R1	1	585.2015380859375	2	585.7673	1169.52005	-0.24767	-0.00014508	-0.69619	-0.0004078	-0.94385	-0.00055288	585.7668544969663	28.415	0.30315	28.415	28.238	28.541	0					9	5	2	0	0	0	0.63289	1	8723	8723		40.725	21.468	1	2265000			60370	8081	44028	44376	58813	58813					-0.05793268220782011
VSEEDVSSRY	10	Unmodified	_VSEEDVSSRY_					0	0	0		ENSG00000177425|ENST00000328827|PAWR	ENSG00000177425|ENST00000328827|PAWR	ENSG00000177425|ENST00000328827|PAWR	MULTI-SECPEP	A375_MHC_IP_R2	2	586.1927490234375	2	585.7673	1169.52005	-0.55377	-0.00032438	0.17674	0.00010353	-0.37703	-0.00022085	585.7673900922724	27.849	0.3046	28.528	28.401	28.706	0.67857					7	5	2	0	0	0	0.85074	1	9634	9634		23.801	15.056	1	1474900			60371	8081	44028	44376	58814	58814					-0.05793268220782011
VSEFENRKCM	10	Unmodified	_VSEFENRKCM_					0	0	0			REV__nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD	REV__nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD	MULTI-SECPEP	A375_MHC_IP_R2	2	415.2866516113281	3	414.858369	1241.55328	-0.31638	-0.00013125	0.030346	1.2589E-05	-0.28604	-0.00011866	414.8583403553861	56.384	0.30588	57.134	56.898	57.203	0.75015					8	5	2	0	0	0	0.9269	1	21325	21325		3.5871	0.95582	1	900620	+		60372	22627	44029	44377	58815	58815					-0.057836809741047546
VSEHQPTTW	9	Unmodified	_VSEHQPTTW_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;STT3B|p.S413F|1|0.19|ENSG00000163527|chr3:31619741-31619741|C/T|missense_variant;ENST00000526726.1_1_11:125479363-125482632:+|nuORF;ENSG00000163527|ENST00000295770|STT3B;ENST00000436236.1_1_3:31638325-31661336:+|nuORF;ENST00000423527.5_1_3:31574490-31661461:+|nuORF	ENSG00000134910|ENST00000392708|STT3A;ENSG00000163527|ENST00000295770|STT3B	ENSG00000134910|ENST00000392708|STT3A	MULTI-MSMS	A375_MHC_IP_R1	1	543.1560668945312	2	542.756538	1083.49852	-0.62876	-0.00034126	-0.08121	-4.4077E-05	-0.70997	-0.00038534	542.7564648690269	31.932	0.51238	31.932	31.718	32.231	0					15	9	2	0	0	0	0.073067	1	10307	10307		55.503	9.8031	1	3046000			60373	4626;6678	44030	44378	58816	58816					-0.0398860845884883
VSEHQPTTW	9	Unmodified	_VSEHQPTTW_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;STT3B|p.S413F|1|0.19|ENSG00000163527|chr3:31619741-31619741|C/T|missense_variant;ENST00000526726.1_1_11:125479363-125482632:+|nuORF;ENSG00000163527|ENST00000295770|STT3B;ENST00000436236.1_1_3:31638325-31661336:+|nuORF;ENST00000423527.5_1_3:31574490-31661461:+|nuORF	ENSG00000134910|ENST00000392708|STT3A;ENSG00000163527|ENST00000295770|STT3B	ENSG00000134910|ENST00000392708|STT3A	MULTI-MSMS	A375_MHC_IP_R2	2	543.156005859375	2	542.756538	1083.49852	-0.85654	-0.0004649	0.31706	0.00017209	-0.53948	-0.00029281	542.7563640221969	31.285	0.35869	32.003	31.821	32.18	0.71857					13	6	3	0	0	0	0.2415	1	11082	11082		34.932	8.6639	1	3093100			60374	4626;6678	44030	44378	58817	58817					-0.0398860845884883
VSEKFNMPRG	10	Unmodified	_VSEKFNMPRG_					0	0	0		ENSG00000163312|ENST00000295488|HELQ	ENSG00000163312|ENST00000295488|HELQ	ENSG00000163312|ENST00000295488|HELQ	MULTI-MSMS	A375_MHC_IP_R1	1	583.194580078125	2	582.79514	1163.57573	-0.25043	-0.00014595	0.17303	0.00010084	-0.077405	-4.5111E-05	583.2966777030572	19.98	0.86328	19.98	19.471	20.334	0					18	16	2	0	0	0	0.71361	1	5087	5087		6.2058	0	1	1063900			60375	6646	44031	44379	58818	58818					0.000482864858213361
VSELEPDKY	9	Unmodified	_VSELEPDKY_					0	0	0		nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;ENST00000475487.1_1_3:58141790-58149086:+|nuORF	nc|ENSG00000136068|O75369-6|FLNB	nc|ENSG00000136068|O75369-6|FLNB	MULTI-SECPEP	A375_MHC_IP_R1	1	540.6849365234375	2	540.266404	1078.51826	-0.44837	-0.00024224	-0.40185	-0.00021711	-0.85022	-0.00045935	540.266209550257	37.376	0.30687	37.376	37.198	37.505	0					8	5	2	0	0	0	0.65623	1	12570	12570		18.373	8.99	1	1136500			60376	4749	44032	44380	58819	58819					-0.017862772387616133
VSEMYYAQ	8	Unmodified	_VSEMYYAQ_					0	0	0			REV__ARHGAP4|p.H175Y|1|0.09|ENSG00000089820|chrX:153920784-153920784|G/A|missense_variant	REV__ARHGAP4|p.H175Y|1|0.09|ENSG00000089820|chrX:153920784-153920784|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	495.6614990234375	2	495.715493	989.416433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.063	1	24.063	23.563	24.563	0								0	0	0	0.16876	1	6735	6735		10.074	1.4806	1		+		60377	15437	44033	44381	58820	58820					-0.0786984686217238
VSEQELLRY	9	Unmodified	_VSEQELLRY_					0	0	0		ENSG00000124587|ENST00000304611|PEX6;nc|ENSG00000124587|Q13608-3|PEX6	ENSG00000124587|ENST00000304611|PEX6	ENSG00000124587|ENST00000304611|PEX6	MULTI-MSMS	A375_MHC_IP_R1	1	569.2138671875	2	568.800946	1135.58734	-0.32245	-0.00018341	0.083981	4.7768E-05	-0.23847	-0.00013564	568.8009558823351	61.647	0.81771	61.647	61.279	62.097	0					52	15	5	0	0	0	0.017727	1	22197	22197		86.332	31.558	1	20896000			60378	3917	44034	44382	58821	58821					0.024968067808231353
VSEQELLRY	9	Unmodified	_VSEQELLRY_					0	0	0		ENSG00000124587|ENST00000304611|PEX6;nc|ENSG00000124587|Q13608-3|PEX6	ENSG00000124587|ENST00000304611|PEX6	ENSG00000124587|ENST00000304611|PEX6	MULTI-MSMS	A375_MHC_IP_R2	2	569.224365234375	2	568.800946	1135.58734	-0.64246	-0.00036543	-0.29011	-0.00016502	-0.93258	-0.00053045	568.8007865396037	60.812	1.515	61.557	61.16	62.675	0.74503					74	29	4	0	0	0	0.22013	1	23224	23224		36.506	13.77	1	13106000			60379	3917	44034	44382	58822	58822					0.024968067808231353
VSERDVYLTY	10	Unmodified	_VSERDVYLTY_					0	0	0		ENST00000472677.1_1_22:50636123-50636456:+|nuORF;ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD	ENST00000472677.1_1_22:50636123-50636456:+|nuORF	ENST00000472677.1_1_22:50636123-50636456:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	623.2108764648438	2	622.81151	1243.60847	-0.44896	-0.00027962	-0.046423	-2.8913E-05	-0.49538	-0.00030853	622.8114008181268	59.682	0.50803	59.682	59.397	59.905	0					26	9	3	0	0	0	0.010122	2	21451	21451;21528		94.909	43.279	1	10984000			60380	7528	44035	44383	58823;58824	58823					-0.0035922791032589885
VSERDVYLTY	10	Unmodified	_VSERDVYLTY_					0	0	0		ENST00000472677.1_1_22:50636123-50636456:+|nuORF;ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD	ENST00000472677.1_1_22:50636123-50636456:+|nuORF	ENST00000472677.1_1_22:50636123-50636456:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	623.2112426757812	2	622.81151	1243.60847	-1.1378	-0.00070861	0.0092241	5.7449E-06	-1.1285	-0.00070287	622.811603053002	58.993	0.60892	59.74	59.438	60.047	0.74714					31	11	4	0	0	0	0.13636	2	22302	22290;22302		62.869	26.362	1	8226700			60381	7528	44035	44383	58825;58826	58826					-0.0035922791032589885
VSERLSAL	8	Unmodified	_VSERLSAL_					0	0	0			REV__ENSG00000167487|ENST00000300976|KLHL26	REV__ENSG00000167487|ENST00000300976|KLHL26	MULTI-SECPEP	A375_MHC_IP_R1	1	438.1534118652344	2	437.753267	873.491981	0.092694	4.0577E-05	-0.28912	-0.00012656	-0.19643	-8.5986E-05	437.7531180999812	71.908	0.50385	71.908	71.615	72.119	0					14	9	2	0	0	0	0.76996	1	26171	26171		36.127	0	1	1619100	+		60382	20762	44036	44384	58827	58827					0.050174983804254225
VSERPLMFLL	10	Unmodified	_VSERPLMFLL_					0	0	0		ENST00000492266.1_1_10:135215046-135216278:+|nuORF;ENST00000460848.5_1_10:135215574-135233666:+|nuORF;ENST00000473735.1_1_10:135208280-135215808:+|nuORF;ENSG00000148824|ENST00000317502|MTG1	ENST00000492266.1_1_10:135215046-135216278:+|nuORF	ENST00000492266.1_1_10:135215046-135216278:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	402.9341125488281	3	402.230132	1203.66857	-0.20161	-8.1095E-05	2.1262	0.00085523	1.9246	0.00077414	402.2310123889241	22.95	0.35275	22.95	22.823	23.176	0					11	6	2	0	0	0	0.93407	1	6209	6209		10.315	5.2677	1	1982800			60383	5763	44037	44385	58828	58828					0.07487791219227802
VSESMQRQG	9	Unmodified	_VSESMQRQG_					0	0	0		nc|ENSG00000065618|Q9UMD9-2|COL17A1;ENSG00000065618|ENST00000648076|COL17A1	nc|ENSG00000065618|Q9UMD9-2|COL17A1	nc|ENSG00000065618|Q9UMD9-2|COL17A1	MULTI-SECPEP	A375_MHC_IP_R1	1	510.6356506347656	2	511.240198	1020.46584	-0.37428	-0.00019135	0.74202	0.00037935	0.36774	0.000188	511.24052685529523	56.817	0.45897	56.817	56.65	57.109	0					11	8	2	0	0	0	0.74412	1	20473	20473		14.838	8.1151	1	895600			60384	1390	44038	44386	58829	58829					-0.04357138853345077
VSETDNIAGN	10	Unmodified	_VSETDNIAGN_					0	0	0			REV__ENSG00000123352|ENST00000552918|SPATS2	REV__ENSG00000123352|ENST00000552918|SPATS2	MULTI-SECPEP	A375_MHC_IP_R1	1	510.6356506347656	2	510.235635	1018.45672	-0.37733	-0.00019253	1.106	0.00056434	0.72871	0.00037181	510.2361241389851	56.992	0.40669	56.992	56.804	57.211	0					13	7	2	0	0	0	0.73104	1	20473	20473		31.268	2.1868	1	1952700	+		60385	18238	44039	44387	58830	58830					-0.05177208938039257
VSEVSSLNY	9	Unmodified	_VSEVSSLNY_					0	0	0		ENSG00000117000|ENST00000372771|RLF;RLF|p.C78Afs*38|1|0.26|ENSG00000117000|chr1:40161630-40161630|C/-|frameshift_variant	ENSG00000117000|ENST00000372771|RLF	ENSG00000117000|ENST00000372771|RLF	MULTI-SECPEP	A375_MHC_IP_R1	1	499.6446533203125	2	499.245472	996.476391	-0.31536	-0.00015744	-1.4714	-0.00073458	-1.7867	-0.00089202	499.24439344861753	57.084	0.96684	57.084	56.397	57.364	0					41	18	3	0	0	0	0.011178	1	20449	20449		115.69	47.611	1	12421000			60386	3451	44040	44388	58831	58831					-0.021988329272744522
VSEVSSLNY	9	Unmodified	_VSEVSSLNY_					0	0	0		ENSG00000117000|ENST00000372771|RLF;RLF|p.C78Afs*38|1|0.26|ENSG00000117000|chr1:40161630-40161630|C/-|frameshift_variant	ENSG00000117000|ENST00000372771|RLF	ENSG00000117000|ENST00000372771|RLF	MULTI-SECPEP	A375_MHC_IP_R2	2	499.6445617675781	2	499.245472	996.476391	-0.87152	-0.0004351	0.15026	7.5019E-05	-0.72125	-0.00036008	499.2454148367469	56.376	0.61177	57.126	56.796	57.408	0.75015					21	11	2	0	0	0	0.07754	1	21292	21292		64.236	28.192	1	15272000			60387	3451	44040	44388	58832	58832					-0.021988329272744522
VSEYQQFQD	9	Unmodified	_VSEYQQFQD_					0	0	0		ENSG00000101162|ENST00000217133|TUBB1;CON__ENSEMBL:ENSBTAP00000025008	ENSG00000101162|ENST00000217133|TUBB1	ENSG00000101162|ENST00000217133|TUBB1	MULTI-MSMS	A375_MHC_IP_R1	1	572.237060546875	2	572.251286	1142.48802	-0.31234	-0.00017874	-0.20216	-0.00011568	-0.5145	-0.00029442	572.2512447890164	77.068	1.2727	77.068	76.622	77.895	0					63	24	4	0	0	0	0.53367	1	28106	28106		18.146	0	1	10813000		+	60388	2260	44041	44389	58833	58833					-0.07752635903943883
VSEYQQFQD	9	Unmodified	_VSEYQQFQD_					0	0	0		ENSG00000101162|ENST00000217133|TUBB1;CON__ENSEMBL:ENSBTAP00000025008	ENSG00000101162|ENST00000217133|TUBB1	ENSG00000101162|ENST00000217133|TUBB1	MULTI-MSMS	A375_MHC_IP_R2	2	572.23681640625	2	572.251286	1142.48802	-0.25795	-0.00014761	-0.17747	-0.00010156	-0.43542	-0.00024917	572.2511596372506	76.474	1.1131	77.214	76.792	77.905	0.74052					50	21	3	0	0	0	0.41409	1	28985	28985		24.021	2.4836	1	11654000		+	60389	2260	44041	44389	58834	58834					-0.07752635903943883
VSFAEKNGW	9	Unmodified	_VSFAEKNGW_					0	0	0		ENSG00000164258|ENST00000296684|NDUFS4	ENSG00000164258|ENST00000296684|NDUFS4	ENSG00000164258|ENST00000296684|NDUFS4	MULTI-SECPEP	A375_MHC_IP_R1	1	519.6557006835938	2	519.256174	1036.49779	-0.37411	-0.00019426	0.18574	9.6449E-05	-0.18836	-9.7808E-05	519.2561188378052	51.904	0.76308	51.904	51.373	52.136	0					31	14	3	0	0	0	0.025235	1	18424	18424		96.111	28.03	1	7591700			60390	6810	44042	44390	58835	58835					-0.01899403107904618
VSFATRRPE	9	Unmodified	_VSFATRRPE_					0	0	0		nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	MULTI-MSMS	A375_MHC_IP_R2	2	355.5793762207031	3	354.861207	1061.56179	-0.66815	-0.0002371	0.08173	2.9003E-05	-0.58642	-0.0002081	354.8612505073939	25.51	1.2719	26.154	25.77	27.042	0.64397					83	24	5	0	0	0	0.41409	1	8644	8644		17.443	0	1	210130000			60391	9982	44043	44391	58836	58836					0.03347377049044553
VSFATRRPE	9	Unmodified	_VSFATRRPE_					0	0	0		nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	354.861207	1061.56179	-0.34301	-0.00012172	-0.19243	-6.8287E-05	-0.53544	-0.00019001	354.8611630824489	26.094	1.1114	26.094	25.866	26.978	0	-0.029921	-0.00017196	NaN	17.443	68	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	248210000			60392	9982	44043	44391							0.03347377049044553
VSFATRRPE	9	Unmodified	_VSFATRRPE_					0	0	0		nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	354.861207	1061.56179	-0.66815	-0.0002371	0.08173	2.9003E-05	-0.58642	-0.0002081	354.8612505073939	25.51	1.2719	26.154	25.77	27.042	0.64397	0.029921	0.00011991	NaN	17.443	83	24	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210130000			60393	9982	44043	44391							0.03347377049044553
VSFFYHQRT	9	Unmodified	_VSFFYHQRT_					0	0	0		chr18:1368597-1406987|154|14.08|0.4|5.15|-|2|LINC00470,LINC00470|2	chr18:1368597-1406987|154|14.08|0.4|5.15|-|2|LINC00470,LINC00470|2	chr18:1368597-1406987|154|14.08|0.4|5.15|-|2|LINC00470,LINC00470|2	MSMS	A375_MHC_IP_R2	2	592.70361328125	2	592.795998	1183.57744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.241	1	52.994	52.494	53.494	0.75225								0	0	0	0.15486	1	19687	19687		11.64	0	1				60394	450	44044	44392	58837	58837					-0.007003364339425389
VSFIFYCFAQ	10	Unmodified	_VSFIFYCFAQ_					0	0	0		ENST00000484243.1_1_1:65886407-65895881:+|nuORF	ENST00000484243.1_1_1:65886407-65895881:+|nuORF	ENST00000484243.1_1_1:65886407-65895881:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	612.1867065429688	2	612.791535	1223.56852	-0.55109	-0.0003377	-0.72624	-0.00044504	-1.2773	-0.00078274	612.790163825734	41.806	0.40901	42.581	42.3	42.709	0.77451					10	7	2	0	0	0	0.83355	1	15500	15500		12.241	0	1	1122000			60395	12560	44045	44393	58838	58838					-0.03432446114607046
VSFKDVAVDF	10	Unmodified	_VSFKDVAVDF_					0	0	0		ENST00000403682.7_1_22:20748811-20761255:+|nuORF;ENST00000415277.2_1_7:75104002-75113489:-|nuORF;RBAK|p.L312*|1|0.21|ENSG00000146587|chr7:5064390-5064390|T/-|frameshift_variant;RBAK|p.H529Tfs*178|1|0.36|ENSG00000146587|chr7:5065038-5065038|G/-|frameshift_variant;ENSG00000164631|ENST00000405858|ZNF12;ENSG00000185252|ENST00000400451|ZNF74;nc|ENSG00000145908|Q96RE9-3|ZNF300;nc|ENSG00000145908|Q96RE9-2|ZNF300;nc|ENSG00000185252|Q16587-3|ZNF74;ENSG00000145908|ENST00000274599|ZNF300;nc|ENSG00000164631|P17014-2|ZNF12;ENST00000394921.8_1_7:75144035-75156997:-|nuORF;ENST00000398379.2_1_7:75104068-75113489:-|nuORF;ENST00000496391.5_2_7:102006508-102036635:+|nuORF;ENST00000430602.5_1_7:75144035-75157107:-|nuORF;nc|ENSG00000146587|Q9NYW8-2|RBAK;nc|ENSG00000291092|Q13401-3|PMS2P3;ENST00000484974.5_1_7:102006508-102020987:+|nuORF;ENST00000477886.5_1_7:102004828-102038101:+|nuORF;ENST00000482549.5_1_7:102006508-102038101:+|nuORF;ENST00000395270.5_1_7:72350354-72361506:+|nuORF;ENST00000476678.1_1_22:20754858-20755110:+|nuORF;ENSG00000146587|ENST00000396912|RBAK;nc|ENSG00000291092|Q13401|PMS2P3;nc|ENSG00000291092|Q13401-2|PMS2P3;ENST00000437568.6_1_7:75140404-75155248:-|nuORF;ENST00000418756.5_1_7:75141716-75156997:-|nuORF;nc|ENSG00000164631|P17014-5|ZNF12	ENST00000403682.7_1_22:20748811-20761255:+|nuORF;nc|ENSG00000291092|Q13401|PMS2P3;nc|ENSG00000164631|P17014-5|ZNF12	nc|ENSG00000291092|Q13401|PMS2P3	MULTI-MSMS	A375_MHC_IP_R1	1	563.5057983398438	2	563.792589	1125.57063	-0.46882	-0.00026432	1.3156	0.00074174	0.84681	0.00047742	563.7936045511162	95.925	0.60324	95.925	95.415	96.018	0					15	11	2	0	0	0	0.57453	1	35178	35178		22.775	0.038682	1	1461400			60396	11575;11712;14732	44046	44394	58839	58839					0.012863058948369144
VSFKDVAVDF	10	Unmodified	_VSFKDVAVDF_					0	0	0		ENST00000403682.7_1_22:20748811-20761255:+|nuORF;ENST00000415277.2_1_7:75104002-75113489:-|nuORF;RBAK|p.L312*|1|0.21|ENSG00000146587|chr7:5064390-5064390|T/-|frameshift_variant;RBAK|p.H529Tfs*178|1|0.36|ENSG00000146587|chr7:5065038-5065038|G/-|frameshift_variant;ENSG00000164631|ENST00000405858|ZNF12;ENSG00000185252|ENST00000400451|ZNF74;nc|ENSG00000145908|Q96RE9-3|ZNF300;nc|ENSG00000145908|Q96RE9-2|ZNF300;nc|ENSG00000185252|Q16587-3|ZNF74;ENSG00000145908|ENST00000274599|ZNF300;nc|ENSG00000164631|P17014-2|ZNF12;ENST00000394921.8_1_7:75144035-75156997:-|nuORF;ENST00000398379.2_1_7:75104068-75113489:-|nuORF;ENST00000496391.5_2_7:102006508-102036635:+|nuORF;ENST00000430602.5_1_7:75144035-75157107:-|nuORF;nc|ENSG00000146587|Q9NYW8-2|RBAK;nc|ENSG00000291092|Q13401-3|PMS2P3;ENST00000484974.5_1_7:102006508-102020987:+|nuORF;ENST00000477886.5_1_7:102004828-102038101:+|nuORF;ENST00000482549.5_1_7:102006508-102038101:+|nuORF;ENST00000395270.5_1_7:72350354-72361506:+|nuORF;ENST00000476678.1_1_22:20754858-20755110:+|nuORF;ENSG00000146587|ENST00000396912|RBAK;nc|ENSG00000291092|Q13401|PMS2P3;nc|ENSG00000291092|Q13401-2|PMS2P3;ENST00000437568.6_1_7:75140404-75155248:-|nuORF;ENST00000418756.5_1_7:75141716-75156997:-|nuORF;nc|ENSG00000164631|P17014-5|ZNF12	ENST00000403682.7_1_22:20748811-20761255:+|nuORF;nc|ENSG00000291092|Q13401|PMS2P3;nc|ENSG00000164631|P17014-5|ZNF12	nc|ENSG00000291092|Q13401|PMS2P3	MSMS	A375_MHC_IP_R2	2	563.87841796875	2	563.792589	1125.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.993	1	95.743	95.243	96.243	0.75045								0	0	0	0.14739	1	36091	36091		22.775	5.6621	1				60397	11575;11712;14732	44046	44394	58840	58840					0.012863058948369144
VSFKSICSF	9	Unmodified	_VSFKSICSF_					0	0	0			REV__ENST00000503391.5_1_4:84182841-84188909:-|nuORF	REV__ENST00000503391.5_1_4:84182841-84188909:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	509.6573486328125	2	509.257328	1016.5001	-0.30952	-0.00015763	-1.8402	-0.00093712	-2.1497	-0.0010947	509.2562898283971	43.425	0.96702	43.425	42.942	43.909	0					21	18	2	0	0	0	0.10622	1	15095	15095		49.554	3.5333	1	4146100	+		60398	25515	44047	44395	58841	58841					-0.007486906944677685
VSFPDVEKAEW	11	Unmodified	_VSFPDVEKAEW_					0	0	0		nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENSG00000139641|ENST00000394048|ESYT1	nc|ENSG00000139641|Q9BSJ8-2|ESYT1	nc|ENSG00000139641|Q9BSJ8-2|ESYT1	MULTI-SECPEP	A375_MHC_IP_R2	2	653.4962768554688	2	653.819335	1305.62412	-0.71999	-0.00047074	0.18689	0.00012219	-0.5331	-0.00034855	653.8196316383925	91.19	0.35472	91.924	91.666	92.021	0.7345					9	6	2	0	0	0	0.98535	1	34682	34682		17.049	3.4337	1	1262900			60399	5098	44048	44396	58842	58842					-0.016469413932782118
VSFPDVRKV	9	Unmodified	_VSFPDVRKV_					0	0	0		ENST00000467479.1_1_1:72163664-72400987:-|nuORF;nc|ENSG00000172260|Q7Z3B1-2|NEGR1;ENSG00000172260|ENST00000357731|NEGR1	ENST00000467479.1_1_1:72163664-72400987:-|nuORF	ENST00000467479.1_1_1:72163664-72400987:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	524.2028198242188	2	523.803291	1045.59203	-0.015963	-8.3613E-06	-0.30173	-0.00015805	-0.3177	-0.00016641	523.802963676724	48.89	1.5215	48.89	48.426	49.947	0					67	29	4	0	0	0	0.074405	1	17209	17209		70.332	5.097	1	18787000			60400	7695	44049	44397	58843	58843					0.07105735714230832
VSFPDVRKV	9	Unmodified	_VSFPDVRKV_					0	0	0		ENST00000467479.1_1_1:72163664-72400987:-|nuORF;nc|ENSG00000172260|Q7Z3B1-2|NEGR1;ENSG00000172260|ENST00000357731|NEGR1	ENST00000467479.1_1_1:72163664-72400987:-|nuORF	ENST00000467479.1_1_1:72163664-72400987:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	525.0226440429688	2	523.803291	1045.59203	-0.44493	-0.00023306	-0.14652	-7.6746E-05	-0.59145	-0.0003098	523.8030347534415	48.095	1.4184	48.857	48.275	49.694	0.76127					58	27	4	0	0	0	0.19747	1	18092	18092		38.176	5.3899	1	25263000			60401	7695	44049	44397	58844	58844					0.07105735714230832
VSFPFPAL	8	Unmodified	_VSFPFPAL_					0	0	0		ENST00000216733.7_1_14:23826097-23826370:-|nuORF	ENST00000216733.7_1_14:23826097-23826370:-|nuORF	ENST00000216733.7_1_14:23826097-23826370:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	439.643798828125	2	439.244547	876.47454	-0.57434	-0.00025227	-0.97782	-0.0004295	-1.5522	-0.00068178	439.24400802876335	34.395	0.71145	35.147	34.803	35.514	0.75225					17	13	2	0	0	0	0.48378	1	12403	12403		49.669	0	1	4322500			60402	10098	44050	44398	58845	58845					0.03136202845416847
VSFQHPHKY	9	Unmodified	_VSFQHPHKY_					0	0	0		ENST00000435741.1_1_Y:28772724-28773147:-|nuORF;ENST00000428076.1_1_13:19956755-19957193:+|nuORF;nc|ENSG00000262919|Q8N1B3-2|CCNQ;ENSG00000262919|ENST00000576892|CCNQ	ENST00000435741.1_1_Y:28772724-28773147:-|nuORF	ENST00000435741.1_1_Y:28772724-28773147:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	381.9294738769531	3	381.529569	1141.56688	0.17365	6.6251E-05	-0.08554	-3.2636E-05	0.088106	3.3615E-05	381.52945291593534	19.394	0.30355	19.394	19.268	19.571	0					13	5	3	0	0	0	0.13797	1	4810	4810		40.239	24.501	1	10339000			60403	9950	44051	44399	58846	58846					0.0017568091163866484
VSFRVAAY	8	Unmodified	_VSFRVAAY_					0	0	0		PAPSS1|p.P559S|1|0.36|ENSG00000138801|chr4:107631692-107631692|G/A|missense_variant	PAPSS1|p.P559S|1|0.36|ENSG00000138801|chr4:107631692-107631692|G/A|missense_variant	PAPSS1|p.P559S|1|0.36|ENSG00000138801|chr4:107631692-107631692|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	456.14410400390625	2	456.750527	911.486502	-0.25556	-0.00011673	-0.31118	-0.00014213	-0.56674	-0.00025886	456.7504863646031	64.073	0.55629	64.073	63.837	64.393	0					19	10	3	0	0	0	0.972	1	23281	23281		7.9102	3.9658	1	1531000			60404	15110	44052	44400	58847	58847					0.02721819588600738
VSFTFKGLS	9	Unmodified	_VSFTFKGLS_					0	0	0			REV__tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	REV__tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	493.2129821777344	2	493.271293	984.528032	-0.53233	-0.00026258	-0.52896	-0.00026092	-1.0613	-0.00052351	493.27098881488064	75.344	0.3057	76.085	75.875	76.181	0.74052					7	5	2	0	0	0	0.38603	1	28583	28583		25.399	2.2509	1	1263600	+		60405	28413	44053	44401	58848	58848					0.03514955557295707
VSFTFKGLS	9	Unmodified	_VSFTFKGLS_					0	0	0			REV__tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	REV__tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	493.271293	984.528032	-0.39531	-0.000195	0.11967	5.9029E-05	-0.27564	-0.00013597	493.27155461590814	76.244	0.40369	76.244	75.966	76.37	0	0.079658	0.00047211	NaN	25.399	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	909750	+		60406	28413	44053	44401							0.03514955557295707
VSFTFKGLS	9	Unmodified	_VSFTFKGLS_					0	0	0			REV__tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	REV__tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	493.271293	984.528032	-0.53233	-0.00026258	-0.52896	-0.00026092	-1.0613	-0.00052351	493.27098881488064	75.344	0.3057	76.085	75.875	76.181	0.74052	-0.079658	-0.00016779	NaN	25.399	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1263600	+		60407	28413	44053	44401							0.03514955557295707
VSFVHSISL	9	Unmodified	_VSFVHSISL_					0	0	0		ENST00000489742.1_1_2:47397901-47403439:-|nuORF;ENST00000456319.5_2_2:47397898-47403621:-|nuORF	ENST00000489742.1_1_2:47397901-47403439:-|nuORF	ENST00000489742.1_1_2:47397901-47403439:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	495.1764831542969	2	494.776742	987.538931	-0.49746	-0.00024613	0.22295	0.00011031	-0.27451	-0.00013582	494.77674113565683	82.555	0.40442	83.298	83.042	83.447	0.74293					18	7	3	0	0	0	0.0021165	1	31333	31333		156.16	78.172	1	3570300			60408	12131	44054	44402	58849	58849					0.0446635793156247
VSFWWGAANT	10	Unmodified	_VSFWWGAANT_					0	0	0			REV__ENST00000490140.1_1_1:155289630-155289717:+|nuORF	REV__ENST00000490140.1_1_1:155289630-155289717:+|nuORF	MSMS	A375_MHC_IP_R2	2	380.1134948730469	3	380.182058	1137.52434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.99	1	95.74	95.24	96.24	0.75045								0	0	0	0.15541	1	36090	36090		1.5923	0	1		+		60409	25382	44055	44403	58850	58850					-0.03891714216592845
VSGDGEYDY	9	Unmodified	_VSGDGEYDY_					0	0	0			REV__ENSG00000129910|ENST00000289746|CDH15	REV__ENSG00000129910|ENST00000289746|CDH15	MSMS	A375_MHC_IP_R2	2	502.65142822265625	2	502.695812	1003.37707	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.07	1	47.831	47.331	48.331	0.76128								0	0	0	0.15486	1	17641	17641		11.64	5.9084	1		+		60410	18512	44056	44404	58851	58851					-0.1244827561204147
VSGDHCRI	8	Unmodified	_VSGDHCRI_					0	0	0		ENST00000535181.5_1_12:133448808-133463914:-|nuORF;ENST00000536196.1_1_12:133448709-133463914:-|nuORF;nc|ENSG00000072609|Q96EP1-5|CHFR;nc|ENSG00000072609|Q96EP1-3|CHFR;ENSG00000072609|ENST00000450056|CHFR;nc|ENSG00000072609|Q96EP1-4|CHFR;nc|ENSG00000072609|Q96EP1|CHFR	ENST00000535181.5_1_12:133448808-133463914:-|nuORF	ENST00000535181.5_1_12:133448808-133463914:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	444.11285400390625	2	443.713619	885.412685	-0.31428	-0.00013945	-0.92309	-0.00040959	-1.2374	-0.00054904	443.71320247503036	90.871	0.55766	90.871	90.641	91.199	0					18	10	2	0	0	0	0.93661	1	33408	33408		6.7232	0	1	2912200			60411	1541	44057	44405	58852	58852					-0.03460471845369284
VSGDHCRI	8	Unmodified	_VSGDHCRI_					0	0	0		ENST00000535181.5_1_12:133448808-133463914:-|nuORF;ENST00000536196.1_1_12:133448709-133463914:-|nuORF;nc|ENSG00000072609|Q96EP1-5|CHFR;nc|ENSG00000072609|Q96EP1-3|CHFR;ENSG00000072609|ENST00000450056|CHFR;nc|ENSG00000072609|Q96EP1-4|CHFR;nc|ENSG00000072609|Q96EP1|CHFR	ENST00000535181.5_1_12:133448808-133463914:-|nuORF	ENST00000535181.5_1_12:133448808-133463914:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	444.1129455566406	2	443.713619	885.412685	-0.26886	-0.0001193	-0.67566	-0.0002998	-0.94453	-0.0004191	443.71327316861505	89.962	0.61282	90.693	90.493	91.106	0.7318					17	11	2	0	0	0	0.92636	1	34228	34228		11.64	0	1	1870400			60412	1541	44057	44405	58853	58853					-0.03460471845369284
VSGEAEYEQ	9	Unmodified	_VSGEAEYEQ_					0	0	0			REV__PCYOX1|p.G88E|1|0.05|ENSG00000116005|chr2:70259510-70259510|G/A|missense_variant	REV__PCYOX1|p.G88E|1|0.05|ENSG00000116005|chr2:70259510-70259510|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	506.92724609375	2	506.216911	1010.41927	-0.75268	-0.00038102	-0.26291	-0.00013309	-1.0156	-0.00051411	506.2167505945564	31.406	0.51111	32.125	31.923	32.434	0.71856					14	9	2	0	0	0	0.75164	1	11054	11054		5.7319	3.1544	1	2815800	+		60413	27749	44058	44406	58854	58854					-0.0855230020365525
VSGEKEWLYQ	10	Unmodified	_VSGEKEWLYQ_					0	0	0			REV__nc|ENSG00000162706|Q8N126-2|CADM3	REV__nc|ENSG00000162706|Q8N126-2|CADM3	MULTI-SECPEP	A375_MHC_IP_R1	1	620.1535034179688	2	619.806228	1237.5979	-0.57317	-0.00035526	-0.097212	-6.0252E-05	-0.67038	-0.00041551	619.8059958464946	32.408	0.3052	32.408	32.179	32.485	0					9	5	2	0	0	0	0.92957	1	10480	10480		3.2813	0	1	3194600	+		60414	27315	44059	44407	58855	58855					-0.0113921056477011
VSGELPRI	8	Unmodified	_VSGELPRI_					0	0	0		nc|ENSG00000168334|Q702N8-2|XIRP1;ENSG00000168334|ENST00000340369|XIRP1	nc|ENSG00000168334|Q702N8-2|XIRP1	nc|ENSG00000168334|Q702N8-2|XIRP1	MULTI-SECPEP	A375_MHC_IP_R2	2	436.15533447265625	2	435.75581	869.497067	-0.37553	-0.00016364	-0.14567	-6.3479E-05	-0.5212	-0.00022712	435.7556983051731	48.753	0.86575	49.51	49.18	50.046	0.75737					42	16	4	0	0	0	0.36486	1	18277	18277		61.357	0	1	14989000			60415	7290	44060	44408	58856	58856					0.05709802243052309
VSGFLASV	8	Unmodified	_VSGFLASV_					0	0	0		SLC12A9|p.S203F|1|0.26|ENSG00000146828|chr7:100857027-100857027|C/T|missense_variant	SLC12A9|p.S203F|1|0.26|ENSG00000146828|chr7:100857027-100857027|C/T|missense_variant	SLC12A9|p.S203F|1|0.26|ENSG00000146828|chr7:100857027-100857027|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	390.6170959472656	2	390.218529	778.422505	0.2051	8.0034E-05	-0.48751	-0.00019024	-0.28241	-0.0001102	390.21719007930784	100.83	2.2292	100.83	99.975	102.2	0					113	43	4	0	0	0	0.7779	3	36814	36814;37037;37443		2.5775	0	1	5176200			60416	29164	44061	44409	58857;58858;58859	58857					0.024430394316595994
VSGGGKDRKLI	11	Unmodified	_VSGGGKDRKLI_					0	0	0		ENSG00000066629|ENST00000262233|EML1;nc|ENSG00000066629|O00423-3|EML1;ENST00000554111.1_1_14:100376608-100381157:+|nuORF	ENSG00000066629|ENST00000262233|EML1	ENSG00000066629|ENST00000262233|EML1	MULTI-MSMS	A375_MHC_IP_R1	1	377.2489013671875	3	377.227779	1128.66151	0.025999	9.8074E-06	-0.318	-0.00011996	-0.292	-0.00011015	377.2276394760159	26.747	0.40248	26.747	26.575	26.978	0					14	7	3	0	0	0	0.70919	1	8002	8002		14.838	3.32	1	3255400			60417	1416	44062	44410	58860	58860					0.10232194662989968
VSGGLLIF	8	Unmodified	_VSGGLLIF_					0	0	0			REV__ENSG00000012174|ENST00000379484|MBTPS2	REV__ENSG00000012174|ENST00000379484|MBTPS2	MULTI-SECPEP	A375_MHC_IP_R2	2	805.8822021484375	1	805.481817	804.47454	-0.70427	-0.00056728	1.7754	0.00143	1.0711	0.00086274	805.483092859671	149.06	0.2583	149.08	148.95	149.21	0.018707					9	4	3	0	0	0	0.972	1	57900	57900		0.69038	0	1	1457500	+		60418	16221	44063	44411	58861	58861					0.0644820284543357
VSGGLLIF	8	Unmodified	_VSGGLLIF_					0	0	0			REV__ENSG00000012174|ENST00000379484|MBTPS2	REV__ENSG00000012174|ENST00000379484|MBTPS2	MULTI-MATCH	A375_MHC_IP_R1	1		1	805.481817	804.47454	-0.7647	-0.00061595	1.9437	0.0015656	1.179	0.00094969	805.4832460772927	149.08	0.20102	149.08	148.96	149.16	0	0.00023088	3.1347E-05	NaN	0.69038	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1395800	+		60419	16221	44063	44411							0.0644820284543357
VSGIGKPVL	9	Unmodified	_VSGIGKPVL_					0	0	0		nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2	nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851|MICAL2	MSMS	A375_MHC_IP_R1	1	435.2821960449219	2	435.276378	868.538203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.706	1	49.706	49.206	50.206	0								0	0	0	0.1521	1	17585	17585		18.135	0	1				60420	14607	44064	44412	58862	58862					0.09867563282523406
VSGIIFSL	8	Unmodified	_VSGIIFSL_					0	0	0		nc|ENSG00000144712|O75155-2|CAND2;ENSG00000144712|ENST00000456430|CAND2	nc|ENSG00000144712|O75155-2|CAND2	nc|ENSG00000144712|O75155-2|CAND2	MULTI-SECPEP	A375_MHC_IP_R1	1	418.6500244140625	2	418.249829	834.485105	0.050817	2.1254E-05	0.48466	0.00020271	0.53548	0.00022397	418.2498911018806	65.447	0.76504	65.447	65.156	65.921	0					27	14	3	0	0	0	0.23624	1	23692	23692		50.855	0	1	3158700			60421	5507	44065	44413	58863	58863					0.06124185499857049
VSGKAWCC	8	Unmodified	_VSGKAWCC_					0	0	0		ENST00000600726.5_1_19:59081765-59082303:+|nuORF	ENST00000600726.5_1_19:59081765-59082303:+|nuORF	ENST00000600726.5_1_19:59081765-59082303:+|nuORF	MSMS	A375_MHC_IP_R1	1	427.15057373046875	2	427.188391	852.362229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.037	1	53.037	52.537	53.537	0								0	0	0	0.16876	1	18891	18891		9.3474	0	1				60422	13868	44066	44414	58864	58864					-0.06985717494740129
VSGKVDILTY	10	Unmodified	_VSGKVDILTY_					0	0	0		nc|ENSG00000134333|P00338-4|LDHA	nc|ENSG00000134333|P00338-4|LDHA	nc|ENSG00000134333|P00338-4|LDHA	MULTI-MSMS	A375_MHC_IP_R1	1	365.9415588378906	3	365.541252	1093.60193	0.44916	0.00016419	0.23034	8.42E-05	0.6795	0.00024839	365.5412029190961	39.155	0.76154	39.155	38.933	39.694	0					34	14	4	0	0	0	0.65106	1	13328	13328		17.049	0	1	10715000			60423	14610	44067	44415	58865	58865					0.058868789289590495
VSGNSVYEV	9	Unmodified	_VSGNSVYEV_					0	0	0		nc|ENSG00000138079|Q07837-4|SLC3A1;nc|ENSG00000138079|Q07837-2|SLC3A1;nc|ENSG00000138079|Q07837-5|SLC3A1;nc|ENSG00000138079|Q07837-7|SLC3A1;nc|ENSG00000138079|Q07837-6|SLC3A1;ENSG00000138079|ENST00000260649|SLC3A1	nc|ENSG00000138079|Q07837-4|SLC3A1	nc|ENSG00000138079|Q07837-4|SLC3A1	MULTI-SECPEP	A375_MHC_IP_R2	2	477.1619567871094	2	477.232364	952.450176	-0.59935	-0.00028603	0.72895	0.00034788	0.1296	6.1849E-05	477.2327305592883	81.848	0.45704	82.591	82.33	82.787	0.74293					14	8	2	0	0	0	0.55359	1	31082	31082		21.747	0	1	2118600			60424	4953	44068	44416	58866	58866					-0.02795102098764346
VSGPAPPK	8	Unmodified	_VSGPAPPK_					0	0	0		nc|ENSG00000008056|P17600-2|SYN1;ENSG00000008056|ENST00000295987|SYN1	nc|ENSG00000008056|P17600-2|SYN1	nc|ENSG00000008056|P17600-2|SYN1	MULTI-SECPEP	A375_MHC_IP_R2	2	375.94989013671875	2	376.718696	751.422839	0.17429	6.5658E-05	-2.3611	-0.00088947	-2.1868	-0.00082381	376.7190708616249	75.148	0.20124	75.885	75.772	75.973	0.73751					5	3	2	0	0	0	0.94479	1	28492	28492		13.508	7.7475	1	621610			60425	949	44069	44417	58867	58867					0.037184591515256216
VSGPAVSDSSL	11	Unmodified	_VSGPAVSDSSL_					0	0	0			REV__ENST00000310604.8_2_17:43112234-43112318:-|nuORF	REV__ENST00000310604.8_2_17:43112234-43112318:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	509.68963623046875	2	509.756204	1017.49785	-0.26114	-0.00013312	0.33113	0.00016879	0.069988	3.5677E-05	509.75638411657576	68.895	0.55711	68.895	68.616	69.173	0					17	10	2	0	0	0	0.78118	1	25032	25032		10.8	0	1	2395400	+		60426	23503	44070	44418	58868	58868					-0.010194478985567912
VSGPLREL	8	Unmodified	_VSGPLREL_					0	0	0		nc|ENSG00000065054|Q15599-2|NHERF2;ENSG00000065054|ENST00000424542|NHERF2;ENST00000564033.1_1_16:2086312-2087982:+|nuORF;nc|ENSG00000065054|Q15599-3|NHERF2	nc|ENSG00000065054|Q15599-2|NHERF2	nc|ENSG00000065054|Q15599-2|NHERF2	MULTI-SECPEP	A375_MHC_IP_R1	1	436.15606689453125	2	435.75581	869.497067	0.087735	3.8231E-05	-0.27658	-0.00012052	-0.18885	-8.2292E-05	435.7556924704182	49.703	0.81648	49.703	49.387	50.204	0					38	15	4	0	0	0	0.42778	1	17547	17547		60.074	3.8969	1	11153000			60427	1367	44071	44419	58869	58869					0.05709802243052309
VSGPVRLV	8	Unmodified	_VSGPVRLV_					0	0	0		ENST00000522483.2_1_19:36526344-36545129:-|nuORF;ENSG00000161277|ENST00000292894|THAP8	ENST00000522483.2_1_19:36526344-36545129:-|nuORF	ENST00000522483.2_1_19:36526344-36545129:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	414.1609191894531	2	413.760895	825.507237	0.78933	0.00032659	-0.75657	-0.00031304	0.03276	1.3555E-05	413.76056121965365	48.995	0.45472	48.995	48.679	49.134	0					12	8	2	0	0	0	0.88903	1	17345	17345		30.637	3.7529	1	2156300			60428	6471	44072	44420	58870	58870					0.08750409968286021
VSGQPLEEII	10	Unmodified	_VSGQPLEEII_					0	0	0		ENST00000496594.5_1_9:130885151-130886781:-|nuORF;ENSG00000148334|ENST00000338961|PTGES2	ENST00000496594.5_1_9:130885151-130886781:-|nuORF	ENST00000496594.5_1_9:130885151-130886781:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	361.9452819824219	3	362.201007	1083.58119	0.023396	8.4741E-06	0.59082	0.000214	0.61422	0.00022247	362.2011960319592	24.401	0.55567	24.401	24.245	24.801	0					18	10	2	0	0	0	0.91556	1	6913	6913		5.7834	2.7882	1	4710300			60429	5732	44073	44421	58871	58871					0.04274288549299854
VSGQTREWAY	10	Unmodified	_VSGQTREWAY_					0	0	0			REV__ENST00000402698.6_1_2:42994579-42997430:-|nuORF	REV__ENST00000402698.6_1_2:42994579-42997430:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	399.2776184082031	3	399.528005	1195.56219	0.061798	2.469E-05	-0.96338	-0.0003849	-0.90158	-0.00036021	399.5276761976057	21.818	0.40621	21.818	21.505	21.911	0					10	7	2	0	0	0	0.93733	1	5713	5713		5.4027	0.87384	1	861990	+		60430	20316	44074	44422	58872	58872					-0.027772480217663542
VSGSEDNLVY	10	Unmodified	_VSGSEDNLVY_					0	0	0		ENSG00000196981|ENST00000330689|WDR5B;ENSG00000196363|ENST00000358625|WDR5	ENSG00000196981|ENST00000330689|WDR5B	ENSG00000196981|ENST00000330689|WDR5B	MULTI-MSMS	A375_MHC_IP_R1	1	542.1531372070312	2	541.753661	1081.49277	-0.53778	-0.00029134	-0.30007	-0.00016257	-0.83785	-0.00045391	541.7534378488884	20.249	0.60731	20.249	19.98	20.587	0					26	11	4	0	0	0	0.2347	1	5164	5164		45.7	15.063	1	2245700			60431	9098	44075	44423	58873	58873					-0.044717517611843505
VSGTIKQVT	9	Unmodified	_VSGTIKQVT_					0	0	0		ENST00000512806.1_1_4:103997795-103998014:-|nuORF	ENST00000512806.1_1_4:103997795-103998014:-|nuORF	ENST00000512806.1_1_4:103997795-103998014:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	467.36248779296875	2	466.7742	931.533846	-0.10779	-5.0311E-05	-0.25632	-0.00011965	-0.36411	-0.00016996	466.7740020978912	35.344	0.25353	35.344	35.269	35.522	0					6	4	2	0	0	0	0.77901	1	11717	11717		5.7319	1.4026	1	1237400			60432	12921	44076	44424	58874	58874					0.06534054068947626
VSGTLDRY	8	Unmodified	_VSGTLDRY_					0	0	0		ENST00000355957.9_1_20:57226753-57226939:+|nuORF	ENST00000355957.9_1_20:57226753-57226939:+|nuORF	ENST00000355957.9_1_20:57226753-57226939:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	456.1348876953125	2	455.735074	909.455596	-0.56902	-0.00025932	0.38665	0.00017621	-0.18237	-8.3111E-05	455.7350298791839	22.935	0.46007	23.565	23.317	23.777	0.63014					13	8	2	0	0	0	0.20774	1	7330	7330		81.89	27.117	1	5318200			60433	10959	44077	44425	58875	58875					-0.0027537851627812415
VSGTPIRRP	9	Unmodified	_VSGTPIRRP_					0	0	0		ENST00000558514.1_1_15:80460394-80460694:+|nuORF;nc|ENSG00000103876|P16930-2|FAH;ENSG00000103876|ENST00000561421|FAH	ENST00000558514.1_1_15:80460394-80460694:+|nuORF	ENST00000558514.1_1_15:80460394-80460694:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	491.46258544921875	2	491.793258	981.571963	-0.54586	-0.00026845	-0.096919	-4.7664E-05	-0.64278	-0.00031611	491.7931683071405	31.555	0.35764	32.279	32.083	32.44	0.72459					13	6	3	0	0	0	0.75466	1	11116	11116		4.3292	0	1	4081000			60434	2472	44078	44426	58876	58876					0.08043984774269575
VSGYSFAMAAL	11	Unmodified	_VSGYSFAMAAL_					0	0	0		ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B;HEATR5B|p.N1450Ifs*20|1|0.31|ENSG00000008869|chr2:37008789-37008789|A/-|frameshift_variant	ENSG00000008869|ENST00000233099|HEATR5B;HEATR5B|p.N1450Ifs*20|1|0.31|ENSG00000008869|chr2:37008789-37008789|A/-|frameshift_variant	ENSG00000008869|ENST00000233099|HEATR5B	MULTI-SECPEP	A375_MHC_IP_R2	2	558.6717529296875	2	558.773342	1115.53213	-0.72202	-0.00040345	0.13091	7.3151E-05	-0.59111	-0.0003303	558.7734725720663	31.901	0.40511	32.638	32.401	32.806	0.73691					11	7	2	0	0	0	0.9574	1	11294	11294		14.405	0	1	3159000			60435	965;14103	44079	44427	58877	58877					-0.021013230113112513
VSHEQLVQLRE	11	Unmodified	_VSHEQLVQLRE_					0	0	0		nc|ENSG00000266302|A2RUR9-2|CCDC144A;ENST00000470068.2_1_17:16635099-16667555:+|nuORF;ENST00000328495.9_1_17:16623938-16667555:+|nuORF;nc|ENSG00000266302|A2RUR9-3|CCDC144A;ENSG00000170160|ENST00000399273|CCDC144A;nc|ENSG00000266302|A2RUR9|CCDC144A	nc|ENSG00000266302|A2RUR9-2|CCDC144A	nc|ENSG00000266302|A2RUR9-2|CCDC144A	MULTI-SECPEP	A375_MHC_IP_R1	1	446.3051452636719	3	446.577247	1336.70991	-0.054213	-2.421E-05	-0.72108	-0.00032202	-0.77529	-0.00034623	446.5768082214604	25.223	0.66141	25.223	25.002	25.664	0					25	11	3	0	0	0	0.99661	1	7359	7359		5.1984	4.0887	1	15214000			60436	7477	44080	44428	58878	58878					0.05502643512204486
VSHLTQHQRT	10	Unmodified	_VSHLTQHQRT_					0	0	0		ENSG00000127903|ENST00000537055|ZNF835	ENSG00000127903|ENST00000537055|ZNF835	ENSG00000127903|ENST00000537055|ZNF835	MSMS	A375_MHC_IP_R1	1	402.57989501953125	3	402.882782	1205.62652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.408	1	56.408	55.908	56.908	0								0	0	0	0.15539	1	20207	20207		3.3196	0.47636	1				60437	4107	44081	44429	58879	58879					0.0319295185502142
VSHLVLGVRP	10	Unmodified	_VSHLVLGVRP_					0	0	0			REV__ENST00000356641.7_2_11:120355929-120355983:+|nuORF	REV__ENST00000356641.7_2_11:120355929-120355983:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	539.2318725585938	2	538.832383	1075.65021	-0.78432	-0.00042262	-0.011187	-6.0277E-06	-0.7955	-0.00042864	538.8323563834612	64.085	0.407	64.825	64.597	65.004	0.74022					13	7	2	0	0	0	0.93194	1	24322	24322		9.3831	1.473	1	1560900	+		60438	23836	44082	44430	58880	58880					0.11541417359512707
VSHPDAGAAW	10	Unmodified	_VSHPDAGAAW_					0	0	0		ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	MULTI-SECPEP	A375_MHC_IP_R1	1	506.1377868652344	2	505.738148	1009.46174	-0.243	-0.00012289	-0.23804	-0.00012039	-0.48104	-0.00024328	505.737947153607	35.262	0.66318	35.262	35.013	35.676	0					27	12	3	0	0	0	0.12137	1	11695	11695		69.105	40.023	1	8600300			60439	2834	44083	44431	58881	58881					-0.04260860284773571
VSHPDAGAAW	10	Unmodified	_VSHPDAGAAW_					0	0	0		ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	MULTI-SECPEP	A375_MHC_IP_R2	2	506.1375427246094	2	505.738148	1009.46174	-0.91974	-0.00046515	-0.10843	-5.4838E-05	-1.0282	-0.00051999	505.73800818257274	34.598	0.76064	35.361	35.068	35.829	0.76338					29	14	3	0	0	0	0.27864	1	12493	12493		49.933	9.9757	1	6969000			60440	2834	44083	44431	58882	58882					-0.04260860284773571
VSHPNEVSW	9	Unmodified	_VSHPNEVSW_					0	0	0		ENST00000424022.2_1_1:225594357-225599062:-|nuORF;ENSG00000143815|ENST00000272163|LBR	ENST00000424022.2_1_1:225594357-225599062:-|nuORF	ENST00000424022.2_1_1:225594357-225599062:-|nuORF	MSMS	A375_MHC_IP_R1	1	527.6878051757812	2	527.751256	1053.48796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.735	1	39.735	39.235	40.235	0								0	0	0	0.026718	1	13607	13607		76.825	14.252	1				60441	5437	44084	44432	58883	58883					-0.0366459111326094
VSHSLSLI	8	Unmodified	_VSHSLSLI_					0	0	0			REV__BRSK1|p.P632L|1|0.15|ENSG00000160469|chr19:55306256-55306256|C/T|missense_variant	REV__BRSK1|p.P632L|1|0.15|ENSG00000160469|chr19:55306256-55306256|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	855.894287109375	1	855.493444	854.486168	-0.45687	-0.00039085	1.1599	0.00099228	0.70301	0.00060142	855.4942970084073	143.64	0.45129	143.66	143.54	143.99	0.024414					12	8	2	0	0	0	0.77861	1	56166	56166		0	0	1	2207600	+		60442	15533	44085	44433	58884	58884					0.05310399868778859
VSHSQTEANVI	11	Unmodified	_VSHSQTEANVI_					0	0	0		ENST00000546387.1_1_12:44238454-44238748:+|nuORF;ENSG00000139173|ENST00000266534|TMEM117	ENST00000546387.1_1_12:44238454-44238748:+|nuORF	ENST00000546387.1_1_12:44238454-44238748:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	593.1986694335938	2	592.798934	1183.58332	-0.47716	-0.00028286	0.48169	0.00028555	0.0045362	2.6891E-06	592.7991754754783	37.838	0.61237	37.838	37.556	38.168	0					42	11	6	0	0	0	0.14766	1	12748	12748		49.554	0	1	45218000			60443	5056	44086	44434	58885	58885					-0.0011328271289130498
VSHSQTEANVI	11	Unmodified	_VSHSQTEANVI_					0	0	0		ENST00000546387.1_1_12:44238454-44238748:+|nuORF;ENSG00000139173|ENST00000266534|TMEM117	ENST00000546387.1_1_12:44238454-44238748:+|nuORF	ENST00000546387.1_1_12:44238454-44238748:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	593.198974609375	2	592.798934	1183.58332	-1.1659	-0.00069113	0.65997	0.00039123	-0.50592	-0.00029991	592.7992965206406	37.138	0.91507	37.909	37.564	38.479	0.7709					45	17	5	0	0	0	0.14766	1	13530	13530		57.722	7.789	1	41439000			60444	5056	44086	44434	58886	58886					-0.0011328271289130498
VSHVLAAL	8	Unmodified	_VSHVLAAL_					0	0	0		nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1;ENST00000486788.2_1_9:35704327-35706084:-|nuORF	nc|ENSG00000137076|Q9Y490-2|TLN1	nc|ENSG00000137076|Q9Y490-2|TLN1	MULTI-MSMS	A375_MHC_IP_R1	1	405.64776611328125	2	405.247621	808.480688	-0.30463	-0.00012345	0.58284	0.00023619	0.27821	0.00011274	405.24776394601946	55.966	0.40493	55.966	55.738	56.143	0					18	7	3	0	0	0	0.24409	1	20042	20042		63.563	3.7676	1	4888700			60445	4857	44087	44435	58887	58887					0.06878721076941474
VSIHSATSL	9	Unmodified	_VSIHSATSL_					0	0	0		ENSG00000110921|ENST00000228510|MVK	ENSG00000110921|ENST00000228510|MVK	ENSG00000110921|ENST00000228510|MVK	MULTI-MSMS	A375_MHC_IP_R1	1	458.6665344238281	2	457.750724	913.486896	-0.11636	-5.3263E-05	0.40666	0.00018615	0.2903	0.00013289	457.75083386137686	38.665	1.0201	38.665	38.371	39.391	0					41	19	4	0	0	0	0.098973	1	13132	13132		50.855	0.92203	1	62560000			60446	2958	44088	44436	58888	58888					0.026691945178072274
VSIKAIGW	8	Unmodified	_VSIKAIGW_					0	0	0		nc|ENSG00000139370|Q8N697-2|SLC15A4;ENSG00000139370|ENST00000266771|SLC15A4	nc|ENSG00000139370|Q8N697-2|SLC15A4	nc|ENSG00000139370|Q8N697-2|SLC15A4	MULTI-SECPEP	A375_MHC_IP_R1	1	437.6634826660156	2	437.263271	872.511988	-0.18469	-8.076E-05	-0.071215	-3.114E-05	-0.25591	-0.0001119	437.2633197929424	76.086	0.50487	76.086	75.815	76.319	0					22	9	3	0	0	0	0.55873	1	27734	27734		58.679	37.142	1	3178300			60447	5075	44089	44437	58889	58889					0.07063294111026153
VSIKAIGW	8	Unmodified	_VSIKAIGW_					0	0	0		nc|ENSG00000139370|Q8N697-2|SLC15A4;ENSG00000139370|ENST00000266771|SLC15A4	nc|ENSG00000139370|Q8N697-2|SLC15A4	nc|ENSG00000139370|Q8N697-2|SLC15A4	MULTI-SECPEP	A375_MHC_IP_R2	2	437.6629943847656	2	437.263271	872.511988	-0.33491	-0.00014644	-0.12917	-5.6479E-05	-0.46407	-0.00020292	437.26320747610475	75.206	0.50648	75.944	75.671	76.178	0.73751					16	9	3	0	0	0	0.55873	1	28560	28560		58.679	37.142	1	2127600			60448	5075	44089	44437	58890	58890					0.07063294111026153
VSIVGNGIKD	10	Unmodified	_VSIVGNGIKD_					0	0	0		tr|U7SSH7|U7SSH7_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01455PE=3SV=1	tr|U7SSH7|U7SSH7_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01455PE=3SV=1	tr|U7SSH7|U7SSH7_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01455PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	500.695068359375	2	501.284931	1000.55531	-0.8967	-0.0004495	-0.59671	-0.00029912	-1.4934	-0.00074862	501.28470827175863	56.388	0.40779	57.138	56.847	57.255	0.75015					13	7	2	0	0	0	0.46496	1	21283	21283		49.554	9.597	1	1926200			60449	29635	44090	44438	58891	58891					0.05505439097657927
VSIVVIIVLLI	11	Unmodified	_VSIVVIIVLLI_					0	0	0		tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1	MSMS	A375_MHC_IP_R2	2	590.7081909179688	2	590.917593	1179.82063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.34	1	139.4	138.9	139.9	0.059906								0	0	0	0.16354	1	54595	54595		0.30703	0	1				60450	29815	44091	44439	58892	58892					0.2379151523841756
VSKKKKKKKRK	11	Unmodified	_VSKKKKKKKRK_					0	0	0		nc|ENSG00000170085|Q8NDZ2-2|SIMC1	nc|ENSG00000170085|Q8NDZ2-2|SIMC1	nc|ENSG00000170085|Q8NDZ2-2|SIMC1	MSMS	A375_MHC_IP_R1	1	693.2659912109375	2	693.493188	1384.97182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.816	1	90.816	90.316	91.316	0								0	0	0	0.1636	1	33376	33376		0	0	1				60451	14762	44092	44440	58893	58893					0.294735143896105
VSKKKKKRK	9	Unmodified	_VSKKKKKRK_					0	0	0		chr17:1102027-1125183|158|10.01|0.59|4.09|-|1|TE_info:AluY,AluY_dup87546,Alu,SINE,acceptor,-,1101724,1102027|None,ABR|3	chr17:1102027-1125183|158|10.01|0.59|4.09|-|1|TE_info:AluY,AluY_dup87546,Alu,SINE,acceptor,-,1101724,1102027|None,ABR|3	chr17:1102027-1125183|158|10.01|0.59|4.09|-|1|TE_info:AluY,AluY_dup87546,Alu,SINE,acceptor,-,1101724,1102027|None,ABR|3	MSMS	A375_MHC_IP_R2	2	377.29974365234375	3	377.267909	1128.7819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.057	1	16.644	16.144	17.144	0.58774								0	0	0	0.15486	1	4775	4775		0	0	1				60452	442	44093	44441	58894	58894					0.22265647447261472
VSKKKKKRK	9	Unmodified	_VSKKKKKRK_					0	0	0		chr17:1102027-1125183|158|10.01|0.59|4.09|-|1|TE_info:AluY,AluY_dup87546,Alu,SINE,acceptor,-,1101724,1102027|None,ABR|3	chr17:1102027-1125183|158|10.01|0.59|4.09|-|1|TE_info:AluY,AluY_dup87546,Alu,SINE,acceptor,-,1101724,1102027|None,ABR|3	chr17:1102027-1125183|158|10.01|0.59|4.09|-|1|TE_info:AluY,AluY_dup87546,Alu,SINE,acceptor,-,1101724,1102027|None,ABR|3	MSMS	A375_MHC_IP_R2	2	377.4801025390625	3	377.267909	1128.7819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.74	1	18.336	17.836	18.836	0.59616								0	0	0	0.15486	1	5234	5234		0	0	1				60453	442	44093	44441	58895	58895					0.22265647447261472
VSKKNIFLLF	10	Unmodified	_VSKKNIFLLF_					0	0	0		nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-3|ADAR	nc|ENSG00000160710|P55265-3|ADAR	MULTI-MSMS	A375_MHC_IP_R1	1	403.98486328125	3	403.584903	1207.73288	-0.32815	-0.00013243	0.59676	0.00024084	0.26861	0.00010841	403.585047830084	97.111	0.45527	97.111	96.883	97.338	0					19	8	3	0	0	0	0.70442	1	35680	35680		10.315	0	1	2773600			60454	6435	44094	44442	58896	58896					0.13732314367643994
VSKKPGLS	8	Unmodified	_VSKKPGLS_					0	0	0			REV__F8|p.E1154K|1|0.11|ENSG00000185010|chrX:154930330-154930330|C/T|missense_variant	REV__F8|p.E1154K|1|0.11|ENSG00000185010|chrX:154930330-154930330|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	408.6539611816406	2	408.252903	814.491253	0.20498	8.3683E-05	1.8226	0.00074408	2.0276	0.00082777	408.25353783201984	143.79	0.30148	143.82	143.69	143.99	0.024414					6	5	2	0	0	0	0.77717	1	56206	56206		5.2307	0	1	2066900	+		60455	26601	44095	44443	58897	58897					0.07658703731385685
VSKPDLITF	9	Unmodified	_VSKPDLITF_					0	0	0		ENSG00000185947|ENST00000300870|ZNF267;ENST00000566541.5_3_16:31886566-31901532:+|nuORF;ENSG00000197302|ENST00000316491|KRBOX5;ENST00000529943.6_1_16:31724760-31765604:+|nuORF;ENST00000534277.5_1_16:31724760-31767037:+|nuORF	ENSG00000185947|ENST00000300870|ZNF267	ENSG00000185947|ENST00000300870|ZNF267	MULTI-SECPEP	A375_MHC_IP_R1	1	510.69183349609375	2	510.292225	1018.5699	-0.45163	-0.00023046	0.13132	6.7013E-05	-0.3203	-0.00016345	510.29216113921717	77.406	1.1694	77.406	76.878	78.048	0					53	22	4	0	0	0	0.019499	1	28186	28186		114.2	60.369	1	22080000			60456	8709	44096	44444	58898	58898					0.06135511245804537
VSKPDLITF	9	Unmodified	_VSKPDLITF_					0	0	0		ENSG00000185947|ENST00000300870|ZNF267;ENST00000566541.5_3_16:31886566-31901532:+|nuORF;ENSG00000197302|ENST00000316491|KRBOX5;ENST00000529943.6_1_16:31724760-31765604:+|nuORF;ENST00000534277.5_1_16:31724760-31767037:+|nuORF	ENSG00000185947|ENST00000300870|ZNF267	ENSG00000185947|ENST00000300870|ZNF267	MULTI-SECPEP	A375_MHC_IP_R2	2	510.6917724609375	2	510.292225	1018.5699	-0.74207	-0.00037867	0.21925	0.00011188	-0.52282	-0.00026679	510.29224272346215	76.51	0.91219	77.251	76.843	77.755	0.74052					45	17	4	0	0	0	0.038931	1	29002	29002		100.09	42.369	1	15756000			60457	8709	44096	44444	58899	58899					0.06135511245804537
VSKPSAPVF	9	Unmodified	_VSKPSAPVF_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-SECPEP	A375_MHC_IP_R1	1	466.66552734375	2	466.26601	930.517468	0.10894	5.0795E-05	-0.94526	-0.00044074	-0.83632	-0.00038995	466.2655079450951	44.497	0.51001	44.497	44.267	44.777	0					13	9	2	0	0	0	0.37663	1	15565	15565		36.506	8.0194	1	2370200			60458	14737	44097	44445	58900	58900					0.04942972902847487
VSKPSAPVF	9	Unmodified	_VSKPSAPVF_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	A375_MHC_IP_R2	2	466.665283203125	2	466.26601	930.517468	-0.46675	-0.00021763	-0.29444	-0.00013729	-0.76119	-0.00035492	466.26575503113486	43.65	0.40293	44.419	44.228	44.631	0.76909					11	7	2	0	0	0	0.13845	1	16297	16297		43.772	3.8151	1	1957700			60459	14737	44097	44445	58901	58901					0.04942972902847487
VSKRKRLVF	9	Unmodified	_VSKRKRLVF_					0	0	0		ADCYAP1R1|p.E380K|2|0.28|ENSG00000078549|chr7:31103328-31103328|G/A|missense_variant	ADCYAP1R1|p.E380K|2|0.28|ENSG00000078549|chr7:31103328-31103328|G/A|missense_variant	ADCYAP1R1|p.E380K|2|0.28|ENSG00000078549|chr7:31103328-31103328|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	378.23944091796875	3	378.248625	1131.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.915	1	54.666	54.166	55.166	0.75105								0	0	0	0.15486	1	20354	20354		1.1933	0	1				60460	62	44098	44446	58902	58902					0.1634538552182221
VSKRKRLVF	9	Unmodified	_VSKRKRLVF_					0	0	0		ADCYAP1R1|p.E380K|2|0.28|ENSG00000078549|chr7:31103328-31103328|G/A|missense_variant	ADCYAP1R1|p.E380K|2|0.28|ENSG00000078549|chr7:31103328-31103328|G/A|missense_variant	ADCYAP1R1|p.E380K|2|0.28|ENSG00000078549|chr7:31103328-31103328|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	378.2886962890625	3	378.248625	1131.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.385	1	73.12	72.62	73.62	0.73541								0	0	0	0.15486	1	27469	27469		4.5289	0.65253	1				60461	62	44098	44446	58903	58903					0.1634538552182221
VSKSLSANNK	10	Unmodified	_VSKSLSANNK_					0	0	0			REV__nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	REV__nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	MULTI-MSMS	A375_MHC_IP_R1	1	524.6929931640625	2	524.293288	1046.57202	-0.81263	-0.00042606	1.1224	0.00058846	0.30975	0.0001624	524.293835354176	26.385	0.35373	26.385	26.221	26.575	0					11	6	2	0	0	0	0.67512	1	7882	7882		15.248	0.8431	1	2875700	+		60462	22487	44099	44447	58904	58904					0.050599399836073644
VSKSTQFEY	9	Unmodified	_VSKSTQFEY_					0	0	0		ENST00000473527.5_1_7:100883089-100895220:-|nuORF;ENSG00000214253|ENST00000223136|FIS1	ENST00000473527.5_1_7:100883089-100895220:-|nuORF	ENST00000473527.5_1_7:100883089-100895220:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	545.1663818359375	2	544.766571	1087.51859	-0.81869	-0.00044599	0.51866	0.00028255	-0.30002	-0.00016344	544.7668093960017	31.843	0.45616	32.58	32.401	32.857	0.73692					16	8	3	0	0	0	0.34746	1	11311	11311		45.7	24.163	1	2950000			60463	9610	44100	44448	58905	58905					-0.021668575189096373
VSKSVTQGF	9	Unmodified	_VSKSVTQGF_					0	0	0		ENST00000481794.5_1_5:132099854-132112889:-|nuORF;ENST00000371478.2_1_5:132097291-132101152:-|nuORF;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8	ENST00000481794.5_1_5:132099854-132112889:-|nuORF	ENST00000481794.5_1_5:132099854-132112889:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	477.15814208984375	2	476.758549	951.502546	-0.85534	-0.00040779	0.49743	0.00023715	-0.35791	-0.00017064	476.758682526187	30.094	0.30231	30.094	29.999	30.301	0					8	5	2	0	0	0	0.13208	1	9545	9545		66.457	66.457	1	4198500			60464	6835	44101	44449	58906	58906					0.024854810348642786
VSKSVTQGF	9	Unmodified	_VSKSVTQGF_					0	0	0		ENST00000481794.5_1_5:132099854-132112889:-|nuORF;ENST00000371478.2_1_5:132097291-132101152:-|nuORF;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8	ENST00000481794.5_1_5:132099854-132112889:-|nuORF	ENST00000481794.5_1_5:132099854-132112889:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	477.1582946777344	2	476.758549	951.502546	-1.2933	-0.00061661	0.30006	0.00014306	-0.99327	-0.00047355	476.7587040872261	29.41	0.30464	30.109	29.981	30.286	0.69872					9	5	2	0	0	0	0.046478	1	10296	10296		92.653	54.679	1	4368500			60465	6835	44101	44449	58907	58907					0.024854810348642786
VSLAPRGGR	9	Unmodified	_VSLAPRGGR_					0	0	0			REV__ENST00000573314.5_1_15:65903254-65903431:-|nuORF	REV__ENST00000573314.5_1_15:65903254-65903431:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	457.1725769042969	2	456.772326	911.530098	-0.22572	-0.0001031	0.43097	0.00019685	0.20525	9.375E-05	456.7724304396978	126.26	1.6199	126.56	126.23	127.85	0.2951					73	31	5	0	0	0	0.72985	1	49364	49364		4.3292	0	1	145630000	+		60466	26293	44102	44450	58908	58908					0.07079429085752054
VSLDFIRAI	9	Unmodified	_VSLDFIRAI_					0	0	0		ENSG00000164815|ENST00000297431|ORC5;ENST00000477223.1_1_7:103767297-103805736:-|nuORF	ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	MULTI-MSMS	A375_MHC_IP_R1	1	517.5593872070312	2	517.305667	1032.59678	-0.13811	-7.1447E-05	-0.38146	-0.00019733	-0.51958	-0.00026878	517.3053726440805	112.89	0.35264	112.89	112.74	113.09	0					11	6	2	0	0	0	0.10622	1	41413	41413		49.554	21.925	1	1171200			60467	6882	44103	44451	58909	58909					0.08178619856994374
VSLDFIRAI	9	Unmodified	_VSLDFIRAI_					0	0	0		ENSG00000164815|ENST00000297431|ORC5;ENST00000477223.1_1_7:103767297-103805736:-|nuORF	ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	MULTI-MATCH	A375_MHC_IP_R2	2		2	517.305667	1032.59678	-0.54405	-0.00028144	0.50135	0.00025935	-0.042695	-2.2087E-05	517.3058018905641	112.04	0.40881	112.76	112.56	112.97	0.72459	-0.063591	0.00073273	NaN	49.554	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1124400			60468	6882	44103	44451							0.08178619856994374
VSLDGRSI	8	Unmodified	_VSLDGRSI_					0	0	0			REV__nc|ENSG00000144893|Q86YW9-2|MED12L	REV__nc|ENSG00000144893|Q86YW9-2|MED12L	MULTI-SECPEP	A375_MHC_IP_R1	1	424.137451171875	2	423.737617	845.460681	0.090747	3.8453E-05	-0.16902	-7.1621E-05	-0.078275	-3.3168E-05	423.7374760299149	54.299	0.55444	54.299	54.013	54.567	0					17	10	2	0	0	0	0.64636	1	19367	19367		42.095	0	1	2610100	+		60469	19453	44104	44452	58910	58910					0.03176925346326698
VSLGKTDA	8	Unmodified	_VSLGKTDA_					0	0	0		ENST00000460072.5_1_2:39963877-39988481:-|nuORF;ENSG00000138050|ENST00000505747|THUMPD2	ENST00000460072.5_1_2:39963877-39988481:-|nuORF	ENST00000460072.5_1_2:39963877-39988481:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	790.8914184570312	1	790.430509	789.423233	-0.79348	-0.00062719	-0.74874	-0.00059183	-1.5422	-0.001219	790.4298197444123	149.23	0.78638	149.23	149.01	149.79	0					25	21	2	0	0	0	0.972	1	57021	57021		2.3027	0	1	435070			60470	4948	44105	44453	58911	58911					0.020098340806953274
VSLGPNLWFD	10	Unmodified	_VSLGPNLWFD_					0	0	0			REV__ENST00000460679.5_3_21:27083779-27086981:+|nuORF	REV__ENST00000460679.5_3_21:27083779-27086981:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	382.6210021972656	3	383.197596	1146.57096	-0.43455	-0.00016652	0.9025	0.00034584	0.46795	0.00017932	383.5321109246819	36.424	0.66039	37.194	37.005	37.665	0.7709					31	12	3	0	0	0	0.87163	1	13207	13207		5.4027	5.2798	1	1977500	+		60471	24965	44106	44454	58912	58912					0.0035372561469557695
VSLGSLINLL	10	Unmodified	_VSLGSLINLL_					0	0	0			REV__ENSG00000154258|ENST00000340001|ABCA9;REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10;REV__nc|ENSG00000154258|Q8IUA7-4|ABCA9	REV__ENSG00000154258|ENST00000340001|ABCA9	MULTI-MSMS	A375_MHC_IP_R1	1	514.6642456054688	2	514.82115	1027.62775	-0.41809	-0.00021524	-0.068751	-3.5394E-05	-0.48684	-0.00025064	514.8210479779552	92.06	0.86121	92.06	91.756	92.617	0					33	16	3	0	0	0	0.29801	1	34021	34021		40.239	8.9709	1	13105000	+		60472	19874;27297;19876	44107	44455	58913	58913					0.1150377317121638
VSLGTKLTK	9	Unmodified	_VSLGTKLTK_					0	0	0			REV__tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1;REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	474.1990966796875	2	473.800217	945.585882	-0.36512	-0.00017299	-1.0387	-0.00049213	-1.4038	-0.00066513	473.79943006197846	147.66	0.22342	147.68	147.57	147.79	0.019897					43	18	4	0	0	0	0.77154	1	57381	57381		0.6015	0	1	335230	+		60473	28281;28869	44108	44456	58914	58914					0.11091217482692173
VSLGTKLTK	9	Unmodified	_VSLGTKLTK_					0	0	0			REV__tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1;REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	473.800217	945.585882	-0.36512	-0.00017299	-1.0387	-0.00049213	-1.4038	-0.00066513	473.79943006197846	147.66	0.22342	147.68	147.57	147.79	0.019897	0.015487	-0.00023399	NaN	0.6015	43	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	335230	+		60474	28281;28869	44108	44456							0.11091217482692173
VSLHNYNSL	9	Unmodified	_VSLHNYNSL_					0	0	0		nc|ENSG00000185246|Q86UA1-2|PRPF39;ENST00000554785.1_1_14:45579308-45583868:+|nuORF	nc|ENSG00000185246|Q86UA1-2|PRPF39	nc|ENSG00000185246|Q86UA1-2|PRPF39	MULTI-SECPEP	A375_MHC_IP_R1	1	524.166015625	2	523.766906	1045.51926	-0.3751	-0.00019647	-0.23014	-0.00012054	-0.60524	-0.000317	523.7665227749038	88.965	0.4567	88.965	88.764	89.221	0					13	8	2	0	0	0	0.63327	1	32688	32688		13.042	10.465	1	1961900			60475	13425	44109	44457	58915	58915					-0.0016801807919364364
VSLIGRWI	8	Unmodified	_VSLIGRWI_					0	0	0			REV__ENST00000517557.5_1_8:97274268-97299434:+|nuORF	REV__ENST00000517557.5_1_8:97274268-97299434:+|nuORF	MSMS	A375_MHC_IP_R1	1	472.1304626464844	2	472.28982	942.565087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.952	1	73.952	73.452	74.452	0								0	0	0	0.16876	1	26936	26936		12.532	0	1		+		60476	19983	44110	44458	58916	58916					0.09150671893701201
VSLKHYHT	8	Unmodified	_VSLKHYHT_					0	0	0			REV__ENST00000380237.5_1_11:5291247-5291382:-|nuORF	REV__ENST00000380237.5_1_11:5291247-5291382:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	492.45074462890625	2	492.766709	983.518865	-0.53184	-0.00026207	0.19404	9.5616E-05	-0.3378	-0.00016645	492.7667865207281	31.588	0.40929	32.325	32.095	32.504	0.73692					10	7	2	0	0	0	0.972	1	11083	11083		12.532	6.7711	1	1216800	+		60477	24211	44111	44459	58917	58917					0.026446069916119086
VSLNSNYDY	9	Unmodified	_VSLNSNYDY_					0	0	0			REV__DEFB116|p.S87Y|1|0.14|ENSG00000215545|chr20:31303261-31303261|G/T|missense_variant	REV__DEFB116|p.S87Y|1|0.14|ENSG00000215545|chr20:31303261-31303261|G/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	538.139892578125	2	537.740554	1073.46655	-0.72457	-0.00038963	0.14921	8.0239E-05	-0.57535	-0.00030939	537.7404403514053	34.228	0.50581	34.228	34.001	34.507	0					13	9	2	0	0	0	0.35487	1	11257	11257		43.858	5.7071	1	4723700	+		60478	15983	44112	44460	58918	58918					-0.06724020932665553
VSLNSNYDY	9	Unmodified	_VSLNSNYDY_					0	0	0			REV__DEFB116|p.S87Y|1|0.14|ENSG00000215545|chr20:31303261-31303261|G/T|missense_variant	REV__DEFB116|p.S87Y|1|0.14|ENSG00000215545|chr20:31303261-31303261|G/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	538.1397705078125	2	537.740554	1073.46655	-1.3267	-0.00071341	-0.041472	-2.2301E-05	-1.3682	-0.00073571	537.7404869377708	33.555	0.40521	34.308	34.095	34.5	0.75225					13	7	2	0	0	0	0.49205	1	12034	12034		34.402	17.459	1	3322300	+		60479	15983	44112	44460	58919	58919					-0.06724020932665553
VSLPFSLQSL	10	Unmodified	_VSLPFSLQSL_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000037665	REV__CON__ENSEMBL:ENSBTAP00000037665	MSMS	A375_MHC_IP_R1	1	364.2694091796875	3	364.209613	1089.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.318	1	27.318	26.818	27.818	0								0	0	0	0.15324	1	8267	8267		10.315	0	1		+	+	60480	15847	44113	44461	58920	58920					0.06579182791574567
VSLPLGFTF	9	Unmodified	_VSLPLGFTF_					0	0	0		ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-SECPEP	A375_MHC_IP_R2	2	980.0551147460938	1	980.545145	979.537869	0.047338	4.6417E-05	0.064724	6.3465E-05	0.11206	0.00010988	980.5454100755343	132.67	0.15192	132.83	132.74	132.89	0.16487					4	2	2	0	0	0	0.011358	1	52187	52187		108	77.772	1	4077700			60481	6370	44114	44462	58921	58921					0.047281435626587154
VSLPLGFTF	9	Unmodified	_VSLPLGFTF_					0	0	0		ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-MATCH	A375_MHC_IP_R1	1		1	980.545145	979.537869	-0.09267	-9.0867E-05	-0.10041	-9.8457E-05	-0.19308	-0.00018932	980.5449917215695	132.82	0.15335	132.82	132.74	132.89	0	-0.0076999	-2.8253E-05	NaN	108	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5141100			60482	6370	44114	44462							0.047281435626587154
VSLRALSSELP	11	Unmodified	_VSLRALSSELP_					0	0	0		nc|ENSG00000106868|Q6UWL2-3|SUSD1;ENSG00000106868|ENST00000374270|SUSD1;nc|ENSG00000106868|Q6UWL2-2|SUSD1	nc|ENSG00000106868|Q6UWL2-3|SUSD1	nc|ENSG00000106868|Q6UWL2-3|SUSD1	MULTI-MSMS	A375_MHC_IP_R2	2	586.7371215820312	2	586.337695	1170.66084	-0.34563	-0.00020266	-0.034987	-2.0514E-05	-0.38062	-0.00022317	586.3375289947303	141.8	1.5864	141.83	140.74	142.33	0.030731					53	30	2	0	0	0	0.73332	1	55498	55498		5.7319	0	1	2270200			60483	2717	44115	44463	58922	58922					0.08233355223273975
VSLRAQHT	8	Unmodified	_VSLRAQHT_					0	0	0		ENST00000597572.1_1_19:17321325-17322591:+|nuORF	ENST00000597572.1_1_19:17321325-17322591:+|nuORF	ENST00000597572.1_1_19:17321325-17322591:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	456.6558837890625	2	456.256508	910.498464	-0.088559	-4.0406E-05	1.8852	0.00086013	1.7966	0.00081972	456.25607726953007	116.18	1.7806	116.84	116.16	117.94	0.65962					73	34	3	0	0	0	0.77741	1	44067	44067		4.3292	0	1	20206000			60484	13847	44116	44464	58923	58923					0.039634363317986754
VSLSAGRSW	9	Unmodified	_VSLSAGRSW_					0	0	0		ENSG00000130997|ENST00000511885|POLN	ENSG00000130997|ENST00000511885|POLN	ENSG00000130997|ENST00000511885|POLN	MULTI-SECPEP	A375_MHC_IP_R1	1	482.1562805175781	2	481.756341	961.498129	-0.3306	-0.00015927	0.29929	0.00014418	-0.031316	-1.5087E-05	481.7563394417561	50.905	0.55561	50.905	50.613	51.168	0					15	10	2	0	0	0	0.34746	1	18079	18079		45.7	15.063	1	1912400			60485	4298	44117	44465	58924	58924					0.015840166119460264
VSLSAGRSW	9	Unmodified	_VSLSAGRSW_					0	0	0		ENSG00000130997|ENST00000511885|POLN	ENSG00000130997|ENST00000511885|POLN	ENSG00000130997|ENST00000511885|POLN	MULTI-SECPEP	A375_MHC_IP_R2	2	482.1559753417969	2	481.756341	961.498129	-0.78993	-0.00038055	0.11136	5.3649E-05	-0.67857	-0.00032691	481.75641831080463	50.043	0.40737	50.797	50.599	51.006	0.75406					12	7	2	0	0	0	0.34746	1	18831	18831		45.7	15.063	1	1622800			60486	4298	44117	44465	58925	58925					0.015840166119460264
VSLSLGWG	8	Unmodified	_VSLSLGWG_					0	0	0			REV__nc|ENSG00000185101|A1A5B4-3|ANO9	REV__nc|ENSG00000185101|A1A5B4-3|ANO9	MULTI-MSMS	A375_MHC_IP_R1	1	410.1242370605469	2	409.723978	817.433404	-0.16834	-6.8972E-05	0.059104	2.4216E-05	-0.10923	-4.4756E-05	409.72422000729523	36.902	0.4535	36.902	36.745	37.198	0					15	8	2	0	0	0	0.77603	1	12437	12437		9.3474	0	1	3356000	+		60487	25812	44118	44466	58926	58926					0.017384418059464224
VSLTWAGH	8	Unmodified	_VSLTWAGH_					0	0	0		ENST00000582618.1_1_18:21948255-21957497:-|nuORF	ENST00000582618.1_1_18:21948255-21957497:-|nuORF	ENST00000582618.1_1_18:21948255-21957497:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	435.28228759765625	2	435.727052	869.439552	-0.11456	-4.9918E-05	0.47671	0.00020772	0.36215	0.0001578	435.729130611433	101.04	0.25323	101.04	100.84	101.09	0					5	4	2	0	0	0	0.972	1	37104	37104		5.7604	0	1	369220			60488	13692	44119	44467	58927	58927					-0.0003903996253029618
VSLVPGAVSAP	11	Unmodified	_VSLVPGAVSAP_					0	0	0			REV__BAHCC1|p.P861L|1|0.18|ENSG00000266074|chr17:81444737-81444737|C/T|missense_variant	REV__BAHCC1|p.P861L|1|0.18|ENSG00000266074|chr17:81444737-81444737|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	499.1897277832031	2	498.78985	995.565146	-0.47075	-0.0002348	-0.34218	-0.00017068	-0.81293	-0.00040548	498.7897372768404	88.148	0.60737	88.88	88.621	89.228	0.7318					23	11	3	0	0	0	0.10452	1	33517	33517		69.105	10.426	1	2945800	+		60489	15495	44120	44468	58928	58928					0.06718627103043673
VSLWIRSL	8	Unmodified	_VSLWIRSL_					0	0	0			REV__ENSG00000189433|ENST00000339480|GJB4	REV__ENSG00000189433|ENST00000339480|GJB4	MULTI-SECPEP	A375_MHC_IP_R1	1	487.69488525390625	2	487.295102	972.575651	-0.26663	-0.00012993	-0.3771	-0.00018376	-0.64373	-0.00031369	487.2949174626078	99.293	0.30506	99.293	99.117	99.422	0					9	5	2	0	0	0	0.90057	1	36509	36509		17.113	0	1	1566800	+		60490	22154	44121	44469	58929	58929					0.08826654548113311
VSLWIRSL	8	Unmodified	_VSLWIRSL_					0	0	0			REV__ENSG00000189433|ENST00000339480|GJB4	REV__ENSG00000189433|ENST00000339480|GJB4	MULTI-MATCH	A375_MHC_IP_R2	2		2	487.295102	972.575651	-0.5826	-0.0002839	0.25288	0.00012323	-0.32972	-0.00016067	487.2952496532665	98.312	0.35698	99.072	98.895	99.251	0.75977	-0.11044	0.00028953	NaN	17.113	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1247300	+		60491	22154	44121	44469							0.08826654548113311
VSLYFYGIRQ	10	Unmodified	_VSLYFYGIRQ_					0	0	0		IL1RAP|p.L16R|1|0.12|ENSG00000196083|chr3:190564336-190564336|T/G|missense_variant	IL1RAP|p.L16R|1|0.12|ENSG00000196083|chr3:190564336-190564336|T/G|missense_variant	IL1RAP|p.L16R|1|0.12|ENSG00000196083|chr3:190564336-190564336|T/G|missense_variant	MSMS	A375_MHC_IP_R1	1	623.3452758789062	2	623.334956	1244.65536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.918	1	47.918	47.418	48.418	0								0	0	0	0.15464	1	16875	16875		3.2813	0	1				60492	14151	44122	44470	58930	58930					0.04281676431446613
VSMCSLWAGE	10	Unmodified	_VSMCSLWAGE_					0	0	0			REV__ENST00000494142.1_1_19:54677740-54682918:-|nuORF	REV__ENST00000494142.1_1_19:54677740-54682918:-|nuORF	MSMS	A375_MHC_IP_R2	2	541.6685180664062	2	541.735902	1081.45725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.116	1	53.867	53.367	54.367	0.75105								0	0	0	0.15207	1	20040	20040		13.906	1.3745	1		+		60493	25429	44123	44471	58931	58931					-0.08021828814185028
VSNDDWYTGL	10	Unmodified	_VSNDDWYTGL_					0	0	0		ENST00000229379.2_1_12:120878347-120878512:+|nuORF	ENST00000229379.2_1_12:120878347-120878512:+|nuORF	ENST00000229379.2_1_12:120878347-120878512:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	585.1798706054688	2	585.259111	1168.50367	-0.39154	-0.00022915	-0.097222	-5.69E-05	-0.48876	-0.00028605	585.2590473208758	68.787	0.60847	69.522	69.221	69.83	0.73511					29	11	3	0	0	0	0.6806	1	26163	26163		14.838	0	1	10996000			60494	10134	44124	44472	58932	58932					-0.07384349386916256
VSNDLTQQEI	10	Unmodified	_VSNDLTQQEI_					0	0	0		nc|ENSG00000141068|Q8IVT5-2|KSR1;nc|ENSG00000141068|Q8IVT5|KSR1;ENSG00000141068|ENST00000644974|KSR1	nc|ENSG00000141068|Q8IVT5-2|KSR1	nc|ENSG00000141068|Q8IVT5-2|KSR1	MULTI-SECPEP	A375_MHC_IP_R1	1	382.3033447265625	3	382.85942	1145.55643	0.65483	0.00025071	1.7175	0.00065756	2.3723	0.00090826	382.85980394573187	22.118	0.20311	22.118	22.013	22.216	0					5	3	2	0	0	0	0.93799	1	5870	5870		0.62683	0	1	445340			60495	5211	44125	44473	58933	58933					-0.010523913240831462
VSNFKPGVY	9	Unmodified	_VSNFKPGVY_					0	0	0		ENSG00000213246|ENST00000225504|SUPT4H1	ENSG00000213246|ENST00000225504|SUPT4H1	ENSG00000213246|ENST00000225504|SUPT4H1	MULTI-SECPEP	A375_MHC_IP_R1	1	506.1688537597656	2	505.768917	1009.52328	-0.63797	-0.00032266	0.44542	0.00022528	-0.19255	-9.7384E-05	505.76903110829863	41.67	0.46127	41.67	41.521	41.982	0					18	8	3	0	0	0	0.034037	1	14419	14419		88.954	58.729	1	4208200			60496	9560	44126	44474	58934	58934					0.018900714145274833
VSNFKPGVY	9	Unmodified	_VSNFKPGVY_					0	0	0		ENSG00000213246|ENST00000225504|SUPT4H1	ENSG00000213246|ENST00000225504|SUPT4H1	ENSG00000213246|ENST00000225504|SUPT4H1	MULTI-SECPEP	A375_MHC_IP_R2	2	506.16864013671875	2	505.768917	1009.52328	-0.95403	-0.00048252	-0.2158	-0.00010914	-1.1698	-0.00059166	505.76871357292333	40.92	0.45643	41.694	41.489	41.946	0.77451					20	8	3	0	0	0	0.05021	1	15187	15187		78.728	42.684	1	4401200			60497	9560	44126	44474	58935	58935					0.018900714145274833
VSNLTLIGSQ	10	Unmodified	_VSNLTLIGSQ_					0	0	0			REV__IL7R|p.P430S|1|0.46|ENSG00000168685|chr5:35876394-35876394|C/T|missense_variant	REV__IL7R|p.P430S|1|0.46|ENSG00000168685|chr5:35876394-35876394|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	516.9282836914062	2	516.290214	1030.56587	-0.57612	-0.00029745	0.44033	0.00022734	-0.1358	-7.0112E-05	516.2900918528666	58.152	0.60792	58.152	57.923	58.531	0					21	11	3	0	0	0	0.36543	1	20803	20803		57.249	15.294	1	2293200	+		60498	26790	44127	44475	58936	58936					0.051814217520814054
VSNLVSRAW	9	Unmodified	_VSNLVSRAW_					0	0	0		ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	516.9282836914062	2	516.285266	1030.55598	-0.55489	-0.00028648	-0.070887	-3.6598E-05	-0.62577	-0.00032308	516.2851593376848	57.96	0.35522	57.96	57.669	58.024	0					11	6	2	0	0	0	0.14438	1	20803	20803		67.081	37.999	1	1562500			60499	10887	44128	44476	58937	58937					0.04192278537357197
VSNMEWSGP	9	Unmodified	_VSNMEWSGP_					0	0	0			REV__nc|ENSG00000196418|Q15973-4|ZNF124	REV__nc|ENSG00000196418|Q15973-4|ZNF124	MULTI-MSMS	A375_MHC_IP_R1	1	503.70587158203125	2	503.718567	1005.42258	-0.57547	-0.00028987	-0.49919	-0.00025145	-1.0747	-0.00054133	503.71842739575186	84.672	0.61398	84.672	84.391	85.005	0					19	11	2	0	0	0	0.70307	1	31091	31091		6.7232	0.36906	1	2151500	+		60500	22195	44129	44477	58938	58938					-0.07991328630635053
VSNPKSFEY	9	Unmodified	_VSNPKSFEY_					0	0	0		nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-5|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1;ENST00000584692.1_1_17:30533991-30534557:+|nuORF	nc|ENSG00000126858|Q8IXI2-4|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	MULTI-SECPEP	A375_MHC_IP_R1	1	536.1605224609375	2	535.761289	1069.50803	-0.50532	-0.00027073	-0.37887	-0.00020299	-0.88419	-0.00047371	535.7609852591821	35.629	0.8682	35.629	35.013	35.881	0					31	16	3	0	0	0	0.16595	1	11878	11878		45.74	11.338	1	5253100			60501	4065	44130	44478	58939	58939					-0.023948401733150604
VSNPKSFEY	9	Unmodified	_VSNPKSFEY_					0	0	0		nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-5|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1;ENST00000584692.1_1_17:30533991-30534557:+|nuORF	nc|ENSG00000126858|Q8IXI2-4|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	MULTI-SECPEP	A375_MHC_IP_R2	2	536.172119140625	2	535.761289	1069.50803	-1.0589	-0.00056731	0.65851	0.0003528	-0.40038	-0.00021451	535.7614796111928	34.965	0.60513	35.729	35.425	36.03	0.76338					25	11	3	0	0	0	0.32966	1	12638	12638		49.527	18.259	1	4013500			60502	4065	44130	44478	58940	58940					-0.023948401733150604
VSNTVVSINV	10	Unmodified	_VSNTVVSINV_					0	0	0			REV__CON__Q922U2	REV__CON__Q922U2	MULTI-SECPEP	A375_MHC_IP_R2	2	516.9273681640625	2	516.290214	1030.56587	-1.1385	-0.00058778	-1.0335	-0.00053356	-2.1719	-0.0011213	516.2904063370856	57.316	0.81599	58.064	57.611	58.427	0.74895					21	15	2	0	0	0	0.54012	1	21538	21538		38.615	15.957	1	2667200	+	+	60503	15896	44131	44479	58941	58941					0.051814217520814054
VSNWGKKQLF	10	Unmodified	_VSNWGKKQLF_					0	0	0		tr|U7SU72|U7SU72_FUSNUCelldivisionproteinFtsI(Penicillin-bindingprotein3)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01125PE=4SV=1	tr|U7SU72|U7SU72_FUSNUCelldivisionproteinFtsI(Penicillin-bindingprotein3)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01125PE=4SV=1	tr|U7SU72|U7SU72_FUSNUCelldivisionproteinFtsI(Penicillin-bindingprotein3)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01125PE=4SV=1	MSMS	A375_MHC_IP_R1	1	402.9402160644531	3	402.892507	1205.65569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.078	1	27.078	26.578	27.578	0								0	0	0	0.15411	1	8160	8160		7.4771	0.43998	1				60504	29744	44132	44480	58942	58942					0.06109096151317317
VSPETRREY	9	Unmodified	_VSPETRREY_					0	0	0		FGA|p.G423E|1|0.17|ENSG00000171560|chr4:154586161-154586161|C/T|missense_variant	FGA|p.G423E|1|0.17|ENSG00000171560|chr4:154586161-154586161|C/T|missense_variant	FGA|p.G423E|1|0.17|ENSG00000171560|chr4:154586161-154586161|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	569.1767578125	2	568.78837	1135.56219	-0.19122	-0.00010876	-0.076554	-4.3543E-05	-0.26777	-0.00015231	569.2891645897645	72.483	0.60921	72.483	72.271	72.88	0					21	11	3	0	0	0	0.4261	1	26400	26400		37.974	11.09	1	2708500			60505	13995	44133	44481	58943	58943					-0.00017248021754312504
VSPHQDSGY	9	Unmodified	_VSPHQDSGY_					0	0	0		nc|ENSG00000126562|Q96J92-2|WNK4	nc|ENSG00000126562|Q96J92-2|WNK4	nc|ENSG00000126562|Q96J92-2|WNK4	MULTI-MSMS	A375_MHC_IP_R1	1	495.6193542480469	2	495.219788	988.425024	-0.71711	-0.00035513	0.14109	6.987E-05	-0.57603	-0.00028526	495.21975364496006	30.057	0.4023	30.057	29.899	30.301	0					11	7	2	0	0	0	0.44024	1	9500	9500		22.736	0.98964	1	7182800			60506	14583	44134	44482	58944	58944					-0.06965156901321734
VSPHQDSGY	9	Unmodified	_VSPHQDSGY_					0	0	0		nc|ENSG00000126562|Q96J92-2|WNK4	nc|ENSG00000126562|Q96J92-2|WNK4	nc|ENSG00000126562|Q96J92-2|WNK4	MULTI-SECPEP	A375_MHC_IP_R2	2	495.6190185546875	2	495.219788	988.425024	-1.2427	-0.0006154	0.0059602	2.9516E-06	-1.2367	-0.00061245	495.2197959874342	29.41	0.45462	30.109	29.93	30.385	0.69872					17	8	3	0	0	0	0.46045	1	10269	10269		36.127	36.127	1	6589400			60507	14583	44134	44482	58945	58945					-0.06965156901321734
VSPKIMETF	9	Unmodified	_VSPKIMETF_					0	0	0		nc|ENSG00000189184|Q9HCL0-2|PCDH18;ENSG00000189184|ENST00000344876|PCDH18	nc|ENSG00000189184|Q9HCL0-2|PCDH18	nc|ENSG00000189184|Q9HCL0-2|PCDH18	MULTI-SECPEP	A375_MHC_IP_R1	1	526.6869506835938	2	526.27826	1050.54197	-0.4932	-0.00025956	-2.1786	-0.0011466	-2.6718	-0.0014061	526.7795177107361	64.133	0.25289	64.133	63.939	64.191	0					7	4	2	0	0	0	0.3213	1	23175	23175		30.637	2.1497	1	1227200			60508	8970	44135	44483	58946	58946					0.018718649940410614
VSPKTLRYV	9	Unmodified	_VSPKTLRYV_					0	0	0			REV__nc|ENSG00000138315|Q8WWZ8-2|OIT3	REV__nc|ENSG00000138315|Q8WWZ8-2|OIT3	MSMS	A375_MHC_IP_R1	1	354.8748779296875	3	354.88172	1061.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.489	1	63.489	62.989	63.989	0								0	0	0	0.15486	1	22950	22950		0.96228	0	1		+		60509	19084	44136	44484	58947	58947					0.09498308748334239
VSPLTERR	8	Unmodified	_VSPLTERR_					0	0	0			REV__ENST00000372748.7_1_1:40782817-40782946:-|nuORF	REV__ENST00000372748.7_1_1:40782817-40782946:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	479.6769714355469	2	479.277441	956.540328	-0.44288	-0.00021226	0.18313	8.7771E-05	-0.25974	-0.00012449	479.27740587608423	109.27	5.8121	110.01	107.38	113.19	0.74683					289	113	4	0	0	0	0.77797	1	42042	42042		2.3027	0	1	18458000	+		60510	24074	44137	44485	58948	58948					0.060319920203255606
VSPPDNPQV	9	Unmodified	_VSPPDNPQV_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	A375_MHC_IP_R1	1	477.14019775390625	2	476.740357	951.46616	-0.71612	-0.0003414	0.43944	0.0002095	-0.27668	-0.0001319	476.7405465054487	39.887	0.6616	39.887	39.541	40.203	0					21	12	2	0	0	0	0.49205	1	13652	13652		27.629	9.4938	1	5568800			60511	7864	44138	44486	58949	58949					-0.011513958618593279
VSPPDNPQV	9	Unmodified	_VSPPDNPQV_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	A375_MHC_IP_R2	2	477.1401062011719	2	476.740357	951.46616	-0.65197	-0.00031082	-0.25221	-0.00012024	-0.90417	-0.00043106	476.74027684207243	39.289	0.76419	40.063	39.658	40.422	0.77451					25	14	2	0	0	0	0.4465	1	14466	14466		38.176	5.8701	1	4864500			60512	7864	44138	44486	58950	58950					-0.011513958618593279
VSPPFEYFIMA	11	Unmodified	_VSPPFEYFIMA_					0	0	0		ENSG00000148408|ENST00000371372|CACNA1B;nc|ENSG00000148408|Q00975-2|CACNA1B	ENSG00000148408|ENST00000371372|CACNA1B	ENSG00000148408|ENST00000371372|CACNA1B	MULTI-SECPEP	A375_MHC_IP_R2	2	434.6739196777344	3	434.214259	1299.62095	-0.37967	-0.00016486	0.0010674	4.6347E-07	-0.3786	-0.00016439	434.5484318191809	41.577	0.30284	42.351	42.098	42.401	0.77451					7	5	2	0	0	0	0.99883	1	15453	15453		2.6312	1.5215	1	1075800			60513	5740	44139	44487	58951	58951					-0.016879077716339452
VSPVAPPP	8	Unmodified	_VSPVAPPP_					0	0	0			REV__nc|ENSG00000164244|Q96M27-4|PRRC1	REV__nc|ENSG00000164244|Q96M27-4|PRRC1	MULTI-SECPEP	A375_MHC_IP_R2	2	382.6210021972656	2	382.221072	762.42759	-0.25721	-9.8309E-05	0.50382	0.00019257	0.24661	9.426E-05	382.221130740006	36.306	0.61054	37.077	36.749	37.359	0.7709					24	11	3	0	0	0	0.48416	1	13207	13207		40.449	0	1	9823200	+		60514	20470	44140	44488	58952	58952					0.03687343294279799
VSQESQRREER	11	Unmodified	_VSQESQRREER_					0	0	0		ENSG00000231824|ENST00000434239|AKAIN1	ENSG00000231824|ENST00000434239|AKAIN1	ENSG00000231824|ENST00000434239|AKAIN1	MULTI-MSMS	A375_MHC_IP_R2	2	703.2545166015625	2	702.352928	1402.6913	-1.1806	-0.00082918	2.0521	0.0014413	0.87158	0.00061216	702.3543158538272	28.488	0.25393	29.166	28.96	29.214	0.67857					7	4	2	0	0	0	0.45155	1	9847	9847		34.932	19.684	1	7576400			60515	9725	44141	44489	58953	58953					0.0060648187036349555
VSQIRLLRILL	11	Unmodified	_VSQIRLLRILL_					0	0	0		ENST00000595463.5_1_19:50414393-50430957:-|nuORF;ENST00000599788.1_2_19:50414393-50432585:-|nuORF;ENST00000596437.5_1_19:50414393-50430957:-|nuORF	ENST00000595463.5_1_19:50414393-50430957:-|nuORF	ENST00000595463.5_1_19:50414393-50430957:-|nuORF	MSMS	A375_MHC_IP_R2	2	662.4462280273438	2	662.445372	1322.87619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.7531	1	9.1682	8.6682	9.6682	0.4151								0	0	0	0.1636	1	2731	2731		0	0	1				60516	13835	44142	44490	58954	58954					0.22766741478744734
VSQKNESV	8	Unmodified	_VSQKNESV_					0	0	0		nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN;ENST00000459963.5_1_1:160321502-160323118:+|nuORF	nc|ENSG00000162736|Q92542-2|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	MULTI-SECPEP	A375_MHC_IP_R1	1	446.1322937011719	2	445.732532	889.45051	-0.0082817	-3.6914E-06	-0.52193	-0.00023264	-0.53022	-0.00023633	445.7322106398247	101.07	0.55638	101.07	100.79	101.34	0					14	10	2	0	0	0	0.972	1	37178	37178		2.3027	0	1	1010500			60517	6585	44143	44491	58955	58955					0.0013631762109298506
VSQKNESV	8	Unmodified	_VSQKNESV_					0	0	0		nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN;ENST00000459963.5_1_1:160321502-160323118:+|nuORF	nc|ENSG00000162736|Q92542-2|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	MULTI-SECPEP	A375_MHC_IP_R2	2	446.1322326660156	2	445.732532	889.45051	-0.1532	-6.8288E-05	-0.57737	-0.00025735	-0.73057	-0.00032564	445.7322399244197	100.12	0.40639	100.89	100.68	101.08	0.76278					11	7	2	0	0	0	0.972	1	38008	38008		2.3027	0	1	843750			60518	6585	44143	44491	58956	58956					0.0013631762109298506
VSQLIQREF	9	Unmodified	_VSQLIQREF_					0	0	0		ENST00000497075.5_1_2:176043783-176046391:-|nuORF;ENSG00000154518|ENST00000284727|ATP5MC3	ENST00000497075.5_1_2:176043783-176046391:-|nuORF	ENST00000497075.5_1_2:176043783-176046391:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	560.7113647460938	2	560.31148	1118.60841	-0.47061	-0.00026369	0.42513	0.0002382	-0.045489	-2.5488E-05	560.3118254287757	57.492	0.61137	57.492	57.211	57.822	0					25	11	3	0	0	0	0.023846	1	20635	20635		104.48	54.93	1	5048800			60519	6093	44144	44492	58957	58957					0.05384816880314247
VSQLIQREF	9	Unmodified	_VSQLIQREF_					0	0	0		ENST00000497075.5_1_2:176043783-176046391:-|nuORF;ENSG00000154518|ENST00000284727|ATP5MC3	ENST00000497075.5_1_2:176043783-176046391:-|nuORF	ENST00000497075.5_1_2:176043783-176046391:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	560.7105712890625	2	560.31148	1118.60841	-1.0629	-0.00059558	0.12881	7.2171E-05	-0.93414	-0.00052341	560.3115878664842	56.691	0.8171	57.441	57.101	57.918	0.75014					36	15	3	0	0	0	0.054506	1	21411	21411		81.915	24.193	1	5452800			60520	6093	44144	44492	58958	58958					0.05384816880314247
VSQLWLCV	8	Unmodified	_VSQLWLCV_					0	0	0			REV__tr|U7T4W4|U7T4W4_FUSNUProteintranslocasesubunitSecYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secYPE=3SV=1	REV__tr|U7T4W4|U7T4W4_FUSNUProteintranslocasesubunitSecYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secYPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	474.67962646484375	2	474.254588	946.494624	-0.35636	-0.000169	-0.83237	-0.00039475	-1.1887	-0.00056376	474.25430012058774	51.329	0.65972	51.329	51.119	51.778	0					17	12	2	0	0	0	0.94587	1	18199	18199		14.838	3.7238	1	1910400	+		60521	28807	44145	44493	58959	58959					0.019236305137155796
VSQRIVRI	8	Unmodified	_VSQRIVRI_					0	0	0			REV__CATSPER4|p.L208R|1|0.3|ENSG00000188782|chr1:26198022-26198022|T/G|missense_variant	REV__CATSPER4|p.L208R|1|0.3|ENSG00000188782|chr1:26198022-26198022|T/G|missense_variant	MSMS	A375_MHC_IP_R2	2	485.8700256347656	2	485.811451	969.608348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.794	1	79.538	79.038	80.038	0.74474								0	0	0	0.16876	1	29908	29908		12.532	1.7076	1		+		60522	15585	44146	44494	58960	58960					0.12232861670997863
VSQSQLRV	8	Unmodified	_VSQSQLRV_					0	0	0		ENSG00000116981|ENST00000235628|NT5C1A	ENSG00000116981|ENST00000235628|NT5C1A	ENSG00000116981|ENST00000235628|NT5C1A	MSMS	A375_MHC_IP_R1	1	458.6606750488281	2	458.764166	915.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.94	1	101.94	101.44	102.44	0								0	0	0	0.16876	1	37460	37460		11.64	0	1				60523	3447	44147	44495	58961	58961					0.052643031289903774
VSQYFEPAND	10	Unmodified	_VSQYFEPAND_					0	0	0			REV__nc|ENSG00000239389|Q9Y5I0-2|PCDHA13	REV__nc|ENSG00000239389|Q9Y5I0-2|PCDHA13	MULTI-MSMS	A375_MHC_IP_R2	2	585.6591796875	2	585.259111	1168.50367	-0.39154	-0.00022915	-0.097222	-5.69E-05	-0.48876	-0.00028605	585.2590473208758	68.787	0.60847	69.522	69.221	69.83	0.73511					29	11	3	0	0	0	0.54492	1	26078	26078		24.991	3.454	1	10996000	+		60524	22769	44148	44496	58962	58962					-0.07384349386893518
VSRAFYGWL	9	Unmodified	_VSRAFYGWL_					0	0	0		nc|ENSG00000141258|O43147-5|SGSM2;nc|ENSG00000141258|O43147|SGSM2;ENSG00000141258|ENST00000268989|SGSM2;nc|ENSG00000141258|O43147-3|SGSM2	nc|ENSG00000141258|O43147-5|SGSM2	nc|ENSG00000141258|O43147-5|SGSM2	MULTI-SECPEP	A375_MHC_IP_R1	1	366.6448669433594	3	366.862548	1097.56581	0.41292	0.00015148	-0.26505	-9.7238E-05	0.14787	5.4247E-05	367.19622172650094	42.524	0.80975	42.524	42.233	43.043	0					23	15	2	0	0	0	0.76827	1	14696	14696		7.1017	3.5052	1	4473500			60525	5223	44149	44497	58963	58963					0.02093466542760325
VSRDNSKYH	9	Unmodified	_VSRDNSKYH_					0	0	0		ENST00000478179.1_1_1:157666980-157667704:-|nuORF;nc|ENSG00000160856|Q96P31-4|FCRL3;ENST00000480682.5_1_1:157667440-157670285:-|nuORF;nc|ENSG00000160856|Q96P31-5|FCRL3;ENST00000494724.5_1_1:157667081-157670285:-|nuORF;nc|ENSG00000160856|Q96P31-2|FCRL3;nc|ENSG00000160856|Q96P31-7|FCRL3;ENSG00000160856|ENST00000368184|FCRL3;nc|ENSG00000160856|Q96P31-3|FCRL3;nc|ENSG00000160856|Q96P31-6|FCRL3	ENST00000478179.1_1_1:157666980-157667704:-|nuORF	ENST00000478179.1_1_1:157666980-157667704:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	369.5844421386719	3	369.18435	1104.53122	0.35963	0.00013277	-0.36724	-0.00013558	-0.0076115	-2.8101E-06	369.18419278259495	20.257	0.40493	20.257	20.03	20.435	0					13	7	2	0	0	0	0.76642	1	5176	5176		8.9762	8.9762	1	6180600			60526	6446	44150	44498	58964	58964					-0.016864013359963792
VSREAKRTPV	10	Unmodified	_VSREAKRTPV_					0	0	0			REV__nc|ENSG00000196684|Q96JZ2-2|HSH2D	REV__nc|ENSG00000196684|Q96JZ2-2|HSH2D	MSMS	A375_MHC_IP_R1	1	381.6400146484375	3	381.559528	1141.65676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.375	1	19.375	18.875	19.875	0								0	0	0	0.15397	1	4763	4763		7.9454	2.162	1		+		60527	22223	44151	44499	58965	58965					0.09159310520226427
VSREKASI	8	Unmodified	_VSREKASI_					0	0	0		tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1	tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1	tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	444.65069580078125	2	445.258717	888.50288	0.0032906	1.4652E-06	0.06784	3.0206E-05	0.07113	3.1671E-05	445.25857784372147	39.366	0.4052	39.366	39.136	39.541	0					9	7	2	0	0	0	0.95424	1	13495	13495		2.9952	0	1	1650200			60528	29484	44152	44500	58966	58966					0.05416900754698872
VSREKASI	8	Unmodified	_VSREKASI_					0	0	0		tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1	tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1	tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R2	2		2	445.258717	888.50288	-0.77158	-0.00034355	0.77675	0.00034586	0.0051713	2.3025E-06	445.2592764180906	38.42	0.30324	39.194	39.047	39.351	0.77451	-0.085867	0.00034152	NaN	5.7319	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	978000			60529	29484	44152	44500							0.05416900754698872
VSREPYWTSPS	11	Unmodified	_VSREPYWTSPS_					0	0	0			REV__ENST00000454309.6_1_3:192126033-192126612:-|nuORF	REV__ENST00000454309.6_1_3:192126033-192126612:-|nuORF	MSMS	A375_MHC_IP_R2	2	436.65277099609375	3	436.878815	1307.61462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.343	1	72.077	71.577	72.577	0.73421								0	0	0	0.16275	1	27064	27064		4.4062	1.3339	1		+		60530	24915	44153	44501	58967	58967					-0.026887096787959308
VSRERQLIVR	10	Unmodified	_VSRERQLIVR_					0	0	0		ENSG00000177103|ENST00000651296|DSCAML1;nc|ENSG00000177103|Q8TD84-2|DSCAML1	ENSG00000177103|ENST00000651296|DSCAML1	ENSG00000177103|ENST00000651296|DSCAML1	MULTI-MSMS	A375_MHC_IP_R1	1	628.7838134765625	2	628.383303	1254.75205	-0.82258	-0.0005169	-0.72227	-0.00045386	-1.5449	-0.00097076	628.382699428159	130.08	1.9267	130.08	129.6	131.53	0					103	37	4	0	0	0	0.72078	1	50006	50006		2.9952	0	1	122090000			60531	8062	44154	44502	58968	58968					0.13486663711250912
VSRILQEAW	9	Unmodified	_VSRILQEAW_					0	0	0		ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-3|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4;ENST00000475582.5_1_2:27589580-27589796:-|nuORF	ENSG00000115211|ENST00000347454|EIF2B4	ENSG00000115211|ENST00000347454|EIF2B4	MULTI-SECPEP	A375_MHC_IP_R2	2	550.7049560546875	2	551.306198	1100.59784	-0.72669	-0.00040063	0.018085	9.9701E-06	-0.70861	-0.00039066	551.3062442993792	70.339	0.50948	71.074	70.793	71.302	0.73421					16	9	2	0	0	0	0.71071	1	26656	26656		14.405	0	1	1990200			60532	3281	44155	44503	58969	58969					0.051568342258860866
VSRIPSETY	9	Unmodified	_VSRIPSETY_					0	0	0		ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96	ENSG00000153283|ENST00000352690|CD96	ENSG00000153283|ENST00000352690|CD96	MULTI-MSMS	A375_MHC_IP_R1	1	526.674072265625	2	526.274564	1050.53457	-0.67425	-0.00035484	-0.096313	-5.0687E-05	-0.77056	-0.00040553	526.2744707066054	32.875	0.6561	32.875	32.585	33.241	0					35	12	4	0	0	0	0.01185	1	10616	10616		93.938	52.098	1	22485000			60533	6023	44156	44504	58970	58970					0.011328487180207958
VSRIPSETY	9	Unmodified	_VSRIPSETY_					0	0	0		ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96	ENSG00000153283|ENST00000352690|CD96	ENSG00000153283|ENST00000352690|CD96	MULTI-MSMS	A375_MHC_IP_R2	2	526.6743774414062	2	526.274564	1050.53457	-0.47976	-0.00025248	-0.36763	-0.00019348	-0.84739	-0.00044596	526.2743487420048	32.198	0.66213	32.935	32.654	33.317	0.73692					29	12	3	0	0	0	0.017012	1	11385	11385		87.258	52.856	1	28936000			60534	6023	44156	44504	58971	58971					0.011328487180207958
VSRLGRIIF	9	Unmodified	_VSRLGRIIF_					0	0	0			REV__nc|ENSG00000237541|P01909|HLA-DQA1	REV__nc|ENSG00000237541|P01909|HLA-DQA1	MULTI-SECPEP	A375_MHC_IP_R2	2	530.9718017578125	2	530.834926	1059.6553	-0.56678	-0.00030086	-0.21516	-0.00011421	-0.78193	-0.00041508	531.3359330125811	88.471	0.30447	89.203	89.026	89.331	0.7318					7	5	2	0	0	0	0.71541	1	33679	33679		3.9444	0	1	705720	+		60535	27514	44157	44505	58972	58972					0.12785721222144275
VSRLYRNKK	9	Unmodified	_VSRLYRNKK_					0	0	0			REV__tr|U7SIT6|U7SIT6_FUSNUEpoxyqueuosinereductaseQueHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=queHPE=3SV=1	REV__tr|U7SIT6|U7SIT6_FUSNUEpoxyqueuosinereductaseQueHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=queHPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	388.97149658203125	3	388.571768	1162.69348	-0.033575	-1.3046E-05	-0.81402	-0.0003163	-0.84759	-0.00032935	388.57136241765227	134.89	1.2213	135.03	134.8	136.02	0.13901					49	23	3	0	0	0	0.76628	1	53055	53055		1.0715	1.0715	1	18598000	+		60536	28216	44158	44506	58973	58973					0.1186360713677459
VSRLYRNKK	9	Unmodified	_VSRLYRNKK_					0	0	0			REV__tr|U7SIT6|U7SIT6_FUSNUEpoxyqueuosinereductaseQueHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=queHPE=3SV=1	REV__tr|U7SIT6|U7SIT6_FUSNUEpoxyqueuosinereductaseQueHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=queHPE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	388.571768	1162.69348	-0.080019	-3.1093E-05	-1.0537	-0.00040945	-1.1337	-0.00044054	388.57128665547657	134.95	0.96611	134.95	134.78	135.74	0	-0.035629	-0.00015413	NaN	1.0715	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19061000	+		60537	28216	44158	44506							0.1186360713677459
VSRMRNQDTL	10	Unmodified	_VSRMRNQDTL_					0	0	0			REV__nc|ENSG00000152520|Q58A45-3|PAN3	REV__nc|ENSG00000152520|Q58A45-3|PAN3	MULTI-SECPEP	A375_MHC_IP_R1	1	407.153076171875	3	407.211911	1218.6139	0.099051	4.0335E-05	-1.5709	-0.00063969	-1.4718	-0.00059935	407.2106486941628	38.828	0.25398	38.828	38.628	38.882	0					5	4	2	0	0	0	0.91556	1	13166	13166		5.7834	0	1	452900	+		60538	27292	44159	44507	58974	58974					0.013341724004931166
VSRPEGRSW	9	Unmodified	_VSRPEGRSW_					0	0	0		nc|ENSG00000131435|P50479-2|PDLIM4;ENSG00000131435|ENST00000253754|PDLIM4	nc|ENSG00000131435|P50479-2|PDLIM4	nc|ENSG00000131435|P50479-2|PDLIM4	MULTI-SECPEP	A375_MHC_IP_R1	1	358.921142578125	3	358.521074	1072.54139	0.48683	0.00017454	-0.22261	-7.9811E-05	0.26421	9.4726E-05	358.5209098457507	22.631	0.40388	22.631	22.419	22.823	0					17	7	4	0	0	0	0.47674	1	6095	6095		22.775	0	1	6026100			60539	4328	44160	44508	58975	58975					0.008022063892440201
VSRPEGRSW	9	Unmodified	_VSRPEGRSW_					0	0	0		nc|ENSG00000131435|P50479-2|PDLIM4;ENSG00000131435|ENST00000253754|PDLIM4	nc|ENSG00000131435|P50479-2|PDLIM4	nc|ENSG00000131435|P50479-2|PDLIM4	MULTI-SECPEP	A375_MHC_IP_R1	1	537.6775512695312	2	537.277972	1072.54139	-0.62662	-0.00033667	-0.14415	-7.7446E-05	-0.77077	-0.00041412	537.2779283910356	20.257	0.5062	20.257	20.03	20.536	0					17	9	3	0	0	0	0.43207	1	5159	5159		12.175	12.175	1	6731900			60540	4328	44160	44508	58976	58976					0.008022063892440201
VSRPEGRSW	9	Unmodified	_VSRPEGRSW_					0	0	0		nc|ENSG00000131435|P50479-2|PDLIM4;ENSG00000131435|ENST00000253754|PDLIM4	nc|ENSG00000131435|P50479-2|PDLIM4	nc|ENSG00000131435|P50479-2|PDLIM4	MULTI-MSMS	A375_MHC_IP_R2	2	537.677490234375	2	537.277972	1072.54139	-1.1479	-0.00061676	0.21054	0.00011312	-0.93739	-0.00050364	537.2780571443924	19.155	0.35178	19.758	19.583	19.935	0.60308					14	6	3	0	0	0	0.36834	1	5866	5866		26.268	11.43	1	6675700			60541	4328	44160	44508	58977	58977					0.008022063892440201
VSRPEGRSW	9	Unmodified	_VSRPEGRSW_					0	0	0		nc|ENSG00000131435|P50479-2|PDLIM4;ENSG00000131435|ENST00000253754|PDLIM4	nc|ENSG00000131435|P50479-2|PDLIM4	nc|ENSG00000131435|P50479-2|PDLIM4	MULTI-MSMS	A375_MHC_IP_R2	2	358.9206848144531	3	358.521074	1072.54139	-0.54881	-0.00019676	-0.28493	-0.00010215	-0.83374	-0.00029891	358.5209335087597	22.182	0.40743	22.801	22.592	23	0.61932					13	7	3	0	0	0	0.22013	1	7026	7026		28.234	2.2129	1	3292200			60542	4328	44160	44508	58978	58978					0.008022063892440201
VSRPEGRSW	9	Unmodified	_VSRPEGRSW_					0	0	0		nc|ENSG00000131435|P50479-2|PDLIM4;ENSG00000131435|ENST00000253754|PDLIM4	nc|ENSG00000131435|P50479-2|PDLIM4	nc|ENSG00000131435|P50479-2|PDLIM4	MULTI-SECPEP	A375_MHC_IP_R2	2	358.92083740234375	3	358.521074	1072.54139	-0.48149	-0.00017263	0.049493	1.7744E-05	-0.432	-0.00015488	358.52106501779383	19.156	0.50439	19.759	19.583	20.088	0.60308					33	9	5	0	0	0	0.27742	1	5832	5832		34.222	8.201	1	77975000			60543	4328	44160	44508	58979	58979					0.008022063892440201
VSRPPVTL	8	Unmodified	_VSRPPVTL_					0	0	0		nc|ENSG00000090097|P57723-2|PCBP4;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000492809.5_1_3:51992079-51994784:-|nuORF	nc|ENSG00000090097|P57723-2|PCBP4	nc|ENSG00000090097|P57723-2|PCBP4	MULTI-MSMS	A375_MHC_IP_R1	1	435.1661682128906	2	434.766178	867.517802	0.22175	9.6409E-05	-0.29798	-0.00012955	-0.076233	-3.3144E-05	434.7660053334428	45.26	0.86004	45.26	44.928	45.789	0					44	16	4	0	0	0	0.16659	1	15794	15794		76.825	26.892	1	40815000			60544	1945	44161	44509	58980	58980					0.07874392622716186
VSRPPVTL	8	Unmodified	_VSRPPVTL_					0	0	0		nc|ENSG00000090097|P57723-2|PCBP4;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000492809.5_1_3:51992079-51994784:-|nuORF	nc|ENSG00000090097|P57723-2|PCBP4	nc|ENSG00000090097|P57723-2|PCBP4	MULTI-SECPEP	A375_MHC_IP_R2	2	435.1659240722656	2	434.766178	867.517802	-0.24433	-0.00010623	-0.1437	-6.2475E-05	-0.38803	-0.0001687	434.7660762772986	44.378	0.91542	45.147	44.782	45.698	0.7691					44	17	4	0	0	0	0.1019	1	16515	16515		106.94	52.167	1	45731000			60545	1945	44161	44509	58981	58981					0.07874392622716186
VSRTQADLDSL	11	Unmodified	_VSRTQADLDSL_					0	0	0		ENST00000585164.2_1_17:79994733-79995558:-|nuORF;ENST00000578273.5_1_17:79994901-79995568:-|nuORF;ENST00000579334.5_1_17:79995052-79995552:-|nuORF;ENST00000580750.5_1_17:79994503-79995558:-|nuORF;ENST00000578885.5_1_17:79994327-79995552:-|nuORF;ENSG00000169738|ENST00000306869|DCXR	ENST00000585164.2_1_17:79994733-79995558:-|nuORF	ENST00000585164.2_1_17:79994733-79995558:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	602.6508178710938	2	602.812042	1203.60953	-1.1406	-0.00068757	1.0875	0.00065554	-0.053132	-3.2028E-05	602.812592158385	36.99	0.25194	37.761	37.665	37.917	0.7709					6	4	2	0	0	0	0.98603	1	13516	13516		11.518	3.3624	1	828760			60546	7433	44162	44510	58982	58982					0.01586986458573847
VSRTQADLDSL	11	Unmodified	_VSRTQADLDSL_					0	0	0		ENST00000585164.2_1_17:79994733-79995558:-|nuORF;ENST00000578273.5_1_17:79994901-79995568:-|nuORF;ENST00000579334.5_1_17:79995052-79995552:-|nuORF;ENST00000580750.5_1_17:79994503-79995558:-|nuORF;ENST00000578885.5_1_17:79994327-79995552:-|nuORF;ENSG00000169738|ENST00000306869|DCXR	ENST00000585164.2_1_17:79994733-79995558:-|nuORF	ENST00000585164.2_1_17:79994733-79995558:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	602.812042	1203.60953	-0.39592	-0.00023866	1.4342	0.00086456	1.0383	0.0006259	602.8135318545809	37.736	0.20395	37.736	37.658	37.862	0	-0.012542	0.00038946	NaN	11.518	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1292800			60547	7433	44162	44510							0.01586986458573847
VSRVMFCCV	9	Unmodified	_VSRVMFCCV_					0	0	0			REV__ENST00000367104.7_1_6:158532036-158532303:-|nuORF	REV__ENST00000367104.7_1_6:158532036-158532303:-|nuORF	MSMS	A375_MHC_IP_R2	2	522.1909790039062	2	522.245383	1042.47621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.132	1	99.892	99.392	100.39	0.75977								0	0	0	0.15486	1	37605	37605		11.64	0.52583	1		+		60548	23953	44163	44511	58983	58983					-0.04332570724136531
VSSDRIQKQ	9	Unmodified	_VSSDRIQKQ_					0	0	0		nc|ENSG00000146278|Q12796-2|PNRC1;PNRC1|p.K250N|1|0.27|ENSG00000146278|chr6:89083962-89083962|A/C|missense_variant;ENSG00000146278|ENST00000336032|PNRC1	nc|ENSG00000146278|Q12796-2|PNRC1	nc|ENSG00000146278|Q12796-2|PNRC1	MULTI-MSMS	A375_MHC_IP_R1	1	531.1902465820312	2	530.790912	1059.56727	-0.88109	-0.00046768	-0.11171	-5.9293E-05	-0.9928	-0.00052697	530.7907017076726	25.991	0.45551	25.991	25.816	26.271	0					13	8	2	0	0	0	0.60101	1	7718	7718		14.838	0.93222	1	4489400			60549	14666	44164	44512	58984	58984					0.03987055840843823
VSSDRIQKQ	9	Unmodified	_VSSDRIQKQ_					0	0	0		nc|ENSG00000146278|Q12796-2|PNRC1;PNRC1|p.K250N|1|0.27|ENSG00000146278|chr6:89083962-89083962|A/C|missense_variant;ENSG00000146278|ENST00000336032|PNRC1	nc|ENSG00000146278|Q12796-2|PNRC1	nc|ENSG00000146278|Q12796-2|PNRC1	MULTI-SECPEP	A375_MHC_IP_R1	1	354.5961608886719	3	354.196367	1059.56727	-0.34802	-0.00012327	0.048852	1.7303E-05	-0.29917	-0.00010596	354.19631592155196	26.043	0.5066	26.043	25.866	26.373	0					17	9	2	0	0	0	0.69507	1	7711	7711		9.544	0	1	11053000			60550	14666	44164	44512	58985	58985					0.03987055840843823
VSSFRPNEF	9	Unmodified	_VSSFRPNEF_					0	0	0		nc|ENSG00000137936|O75815-2|BCAR3;nc|ENSG00000137936|O75815-3|BCAR3;ENSG00000137936|ENST00000260502|BCAR3	nc|ENSG00000137936|O75815-2|BCAR3	nc|ENSG00000137936|O75815-2|BCAR3	MULTI-MSMS	A375_MHC_IP_R1	1	542.1663208007812	2	541.766906	1081.51926	-0.61678	-0.00033415	0.084679	4.5876E-05	-0.5321	-0.00028828	541.7669558144052	50.278	0.86627	50.278	49.947	50.814	0					52	16	5	0	0	0	0.31609	1	18003	18003		29.437	29.437	1	40509000			60551	4935	44165	44513	58986	58986					-0.018240180791963212
VSSFRPNEF	9	Unmodified	_VSSFRPNEF_					0	0	0		nc|ENSG00000137936|O75815-2|BCAR3;nc|ENSG00000137936|O75815-3|BCAR3;ENSG00000137936|ENST00000260502|BCAR3	nc|ENSG00000137936|O75815-2|BCAR3	nc|ENSG00000137936|O75815-2|BCAR3	MULTI-SECPEP	A375_MHC_IP_R2	2	542.1666870117188	2	541.766906	1081.51926	-1.1251	-0.00060953	0.3584	0.00019417	-0.76668	-0.00041536	541.7670766218581	49.502	0.86235	50.259	49.995	50.857	0.75737					55	16	5	0	0	0	0.011143	1	18568	18568		103.82	52.408	1	52906000			60552	4935	44165	44513	58987	58987					-0.018240180791963212
VSSGVLISL	9	Unmodified	_VSSGVLISL_					0	0	0			REV__ENSG00000204624|ENST00000294484|DISP3	REV__ENSG00000204624|ENST00000294484|DISP3	MULTI-MSMS	A375_MHC_IP_R2	2	874.5502319335938	1	874.52441	873.517133	-0.61467	-0.00053754	0.075347	6.5893E-05	-0.53932	-0.00047165	874.5244228327077	107.32	1.1202	108.07	107.69	108.81	0.75436					50	21	4	0	0	0	0.25276	1	40797	40797		34.102	0	1	50226000	+		60553	22532	44166	44514	58988	58988					0.0753155318300287
VSSGVQRVL	9	Unmodified	_VSSGVQRVL_					0	0	0		nc|ENSG00000163539|O75122|CLASP2;ENSG00000163539|ENST00000682230|CLASP2;nc|ENSG00000163539|O75122-3|CLASP2	nc|ENSG00000163539|O75122|CLASP2	nc|ENSG00000163539|O75122|CLASP2	MULTI-SECPEP	A375_MHC_IP_R1	1	472.66943359375	2	472.779816	943.545079	-0.4243	-0.0002006	1.1151	0.0005272	0.69082	0.0003266	472.7798039172406	36.064	0.60903	36.064	35.83	36.439	0					21	11	3	0	0	0	0.083712	1	12039	12039		56.177	0	1	6315200			60554	6681	44167	44515	58989	58989					0.07104876163089102
VSSGVQRVL	9	Unmodified	_VSSGVQRVL_					0	0	0		nc|ENSG00000163539|O75122|CLASP2;ENSG00000163539|ENST00000682230|CLASP2;nc|ENSG00000163539|O75122-3|CLASP2	nc|ENSG00000163539|O75122|CLASP2	nc|ENSG00000163539|O75122|CLASP2	MULTI-SECPEP	A375_MHC_IP_R2	2	472.66925048828125	2	472.779816	943.545079	-0.80143	-0.0003789	1.6205	0.00076614	0.81906	0.00038724	472.77992203771447	35.221	0.80814	35.984	35.627	36.435	0.76338					25	15	3	0	0	0	0.070665	1	12748	12748		51.63	7.8574	1	4937700			60555	6681	44167	44515	58990	58990					0.07104876163089102
VSSHVERVF	9	Unmodified	_VSSHVERVF_					0	0	0		ENST00000464178.1_1_1:38148756-38155336:-|nuORF;ENSG00000116922|ENST00000486637|C1orf109	ENST00000464178.1_1_1:38148756-38155336:-|nuORF	ENST00000464178.1_1_1:38148756-38155336:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	354.2572326660156	3	353.857574	1058.55089	-0.40247	-0.00014242	-0.024533	-8.6811E-06	-0.42701	-0.0001511	353.8575287399308	30.024	0.40255	30.024	29.848	30.251	0					16	7	3	0	0	0	0.056914	1	9471	9471		49.742	34.493	1	22159000			60556	3445	44168	44516	58991	58991					0.023959746747550525
VSSHVERVF	9	Unmodified	_VSSHVERVF_					0	0	0		ENST00000464178.1_1_1:38148756-38155336:-|nuORF;ENSG00000116922|ENST00000486637|C1orf109	ENST00000464178.1_1_1:38148756-38155336:-|nuORF	ENST00000464178.1_1_1:38148756-38155336:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	354.2570495605469	3	353.857574	1058.55089	-1.1058	-0.00039129	0.5481	0.00019395	-0.55769	-0.00019734	353.857671142288	29.24	0.5558	29.939	29.73	30.286	0.69872					19	10	3	0	0	0	0.024574	1	10187	10187		64.927	37.704	1	12021000			60557	3445	44168	44516	58992	58992					0.023959746747550525
VSSHVERVF	9	Unmodified	_VSSHVERVF_					0	0	0		ENST00000464178.1_1_1:38148756-38155336:-|nuORF;ENSG00000116922|ENST00000486637|C1orf109	ENST00000464178.1_1_1:38148756-38155336:-|nuORF	ENST00000464178.1_1_1:38148756-38155336:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	530.6514282226562	2	530.282723	1058.55089	-1.4919	-0.0007911	0.1341	7.1108E-05	-1.3578	-0.00071999	530.2830639400902	29.174	0.35369	29.873	29.78	30.134	0.69872					9	6	2	0	0	0	0.1952	1	10207	10207		32.898	20.366	1	3265600			60558	3445	44168	44516	58993	58993					0.023959746747550525
VSSICAIQV	9	Unmodified	_VSSICAIQV_					0	0	0		ENSG00000149054|ENST00000278319|ZNF215	ENSG00000149054|ENST00000278319|ZNF215	ENSG00000149054|ENST00000278319|ZNF215	MULTI-SECPEP	A375_MHC_IP_R2	2	460.64898681640625	2	460.249503	918.484453	-0.42215	-0.0001943	-0.12399	-5.7066E-05	-0.54614	-0.00025136	460.24952274283936	82.908	1.9301	83.648	82.681	84.611	0.73962					60	37	2	0	0	0	0.39388	1	31364	31364		19.257	4.4187	1	1594000			60559	5779	44169	44517	58994	58994					0.02195022788487222
VSSLQPLP	8	Unmodified	_VSSLQPLP_					0	0	0		ENST00000460592.1_1_2:219249878-219250215:+|nuORF	ENST00000460592.1_1_2:219249878-219250215:+|nuORF	ENST00000460592.1_1_2:219249878-219250215:+|nuORF	MSMS	A375_MHC_IP_R2	2	420.6459655761719	2	420.744911	839.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.17	1	108.92	108.42	109.42	0.75436								0	0	0	0.16876	1	40849	40849		5.2307	0	1				60560	12169	44170	44518	58995	58995					0.04910997494471303
VSSPIHSGF	9	Unmodified	_VSSPIHSGF_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-7|ANK3	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	A375_MHC_IP_R1	1	466.13726806640625	2	465.737617	929.460681	-0.21152	-9.8511E-05	0.30713	0.00014304	0.095611	4.453E-05	465.7376421937839	43.72	0.55857	43.72	43.351	43.909	0					14	10	2	0	0	0	0.023756	1	15216	15216		92.822	14.838	1	3564900			60561	5883	44171	44519	58996	58996					-0.0068707465366060205
VSSPIHSGF	9	Unmodified	_VSSPIHSGF_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-7|ANK3	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	A375_MHC_IP_R2	2	466.1372985839844	2	465.737617	929.460681	-0.57172	-0.00026627	0.25846	0.00012037	-0.31326	-0.0001459	465.7376367493514	42.915	0.50547	43.687	43.421	43.926	0.7724					14	9	2	0	0	0	0.033126	1	15989	15989		85.357	14.641	1	4462300			60562	5883	44171	44519	58997	58997					-0.0068707465366060205
VSSPVRRDF	9	Unmodified	_VSSPVRRDF_					0	0	0		ENST00000550292.1_1_12:30948620-30949103:+|nuORF	ENST00000550292.1_1_12:30948620-30949103:+|nuORF	ENST00000550292.1_1_12:30948620-30949103:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	532.1876831054688	2	531.788173	1061.56179	-0.92966	-0.00049438	-0.0016455	-8.7504E-07	-0.93131	-0.00049526	531.7881777565981	26.137	0.86178	26.137	25.866	26.728	0					42	16	4	0	0	0	0.27114	1	7712	7712		45.74	15.103	1	51662000			60563	13367	44172	44520	58998	58998					0.03347377049021816
VSSPVRRDF	9	Unmodified	_VSSPVRRDF_					0	0	0		ENST00000550292.1_1_12:30948620-30949103:+|nuORF	ENST00000550292.1_1_12:30948620-30949103:+|nuORF	ENST00000550292.1_1_12:30948620-30949103:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	532.1875	2	531.788173	1061.56179	-1.1226	-0.00059699	0.12129	6.45E-05	-1.0013	-0.00053249	531.7882284897286	25.48	0.86546	26.124	25.822	26.687	0.64368					46	16	4	0	0	0	0.27114	1	8475	8475		38.615	13.215	1	41210000			60564	13367	44172	44520	58999	58999					0.03347377049021816
VSSRCRGNLVR	11	Unmodified	_VSSRCRGNLVR_					0	0	0			REV__ENST00000357736.8_1_17:79877633-79877984:-|nuORF	REV__ENST00000357736.8_1_17:79877633-79877984:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	623.4052734375	2	623.843487	1245.67242	-0.69511	-0.00043364	-0.0076462	-4.7701E-06	-0.70276	-0.00043841	623.8436589293908	19.243	0.096786	19.243	19.221	19.318	0					5	3	2	0	0	0	0.99507	1	4683	4683		4.5289	0	1	52746000	+		60565	23848	44173	44521	59000	59000					0.05941273765620281
VSSSFCWFP	9	Unmodified	_VSSSFCWFP_					0	0	0			REV__FBXO15|p.P444S|1|0.05|ENSG00000141665|chr18:74073664-74073664|G/A|missense_variant	REV__FBXO15|p.P444S|1|0.05|ENSG00000141665|chr18:74073664-74073664|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	530.6338500976562	2	530.233853	1058.45315	-0.633	-0.00033564	0.21555	0.00011429	-0.41746	-0.00022135	530.2339635767352	87.401	0.81485	87.401	87.083	87.898	0					23	15	2	0	0	0	0.62767	1	32040	32040		16.942	0	1	3768700	+		60566	26620	44174	44522	59001	59001					-0.07373550245597471
VSSSRFSSGG	10	Unmodified	_VSSSRFSSGG_					0	0	0		CON__P02533;ENSG00000186847|ENST00000167586|KRT14	CON__P02533	CON__P02533	MSMS	A375_MHC_IP_R1	1	485.6953430175781	2	485.733063	969.451573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.097	1	49.097	48.597	49.597	0								0	0	0	0.15089	1	17352	17352		16.149	0	1			+	60567	580	44175	44523	59002	59002					-0.03437468009985878
VSSTKLVSF	9	Unmodified	_VSSTKLVSF_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-SECPEP	A375_MHC_IP_R1	1	484.6124572753906	2	484.276575	966.538597	-0.1739	-8.4218E-05	-0.1267	-6.1358E-05	-0.30061	-0.00014558	484.2764699801903	56.258	0.60808	56.258	55.991	56.599	0					26	11	3	0	0	0	0.021951	1	20142	20142		103.82	61.868	1	9027500			60568	9113	44176	44524	59003	59003					0.05398938211715176
VSSTKLVSF	9	Unmodified	_VSSTKLVSF_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	A375_MHC_IP_R2	2	484.6762390136719	2	484.276575	966.538597	-0.68658	-0.0003325	0.16762	8.1175E-05	-0.51896	-0.00025132	484.27655858195766	55.41	0.60957	56.161	55.83	56.439	0.75075					28	11	4	0	0	0	0.02331	1	20897	20897		80.676	47.89	1	9906600			60569	9113	44176	44524	59004	59004					0.05398938211715176
VSSTSEIGTRY	11	Unmodified	_VSSTSEIGTRY_					0	0	0		ENSG00000103994|ENST00000564754|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106;nc|ENSG00000103994|Q9H2Y7-2|ZNF106	ENSG00000103994|ENST00000564754|ZNF106	ENSG00000103994|ENST00000564754|ZNF106	MULTI-MSMS	A375_MHC_IP_R1	1	600.6983032226562	2	600.298767	1198.58298	-0.72361	-0.00043438	-0.28232	-0.00016948	-1.0059	-0.00060386	600.298863180145	30.074	0.25078	30.074	29.899	30.15	0					6	4	2	0	0	0	0.00041885	1	9527	9527		111.31	76.377	1	4331100			60570	2477	44177	44525	59005	59005					-0.008367024327526451
VSSTWDRQF	9	Unmodified	_VSSTWDRQF_					0	0	0		ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	563.6693115234375	2	563.269813	1124.52507	-0.40082	-0.00022577	-2.8466	-0.0016034	-3.2474	-0.0018292	563.2682919573764	50.89	0.6061	50.89	50.613	51.219	0					18	11	2	0	0	0	0.37663	1	18051	18051		36.506	0	1	7183400			60571	6248	44178	44526	59006	59006					-0.03220919567525016
VSSTWDRQF	9	Unmodified	_VSSTWDRQF_					0	0	0		ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	563.6693115234375	2	563.269813	1124.52507	-0.72414	-0.00040789	-3.3893	-0.0019091	-4.1135	-0.002317	563.2679435315555	50.149	0.81358	50.903	50.599	51.412	0.75406					32	15	3	0	0	0	0.16764	1	18851	18851		51.63	25.362	1	4899300			60572	6248	44178	44526	59007	59007					-0.03220919567525016
VSSVKRTLETI	11	Unmodified	_VSSVKRTLETI_					0	0	0			REV__ENST00000420938.1_1_1:156708347-156710183:-|nuORF	REV__ENST00000420938.1_1_1:156708347-156710183:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	616.6278686523438	2	616.864077	1231.7136	-0.69898	-0.00043118	-0.10421	-6.4282E-05	-0.80319	-0.00049546	617.3655928975218	142.15	1.2698	142.15	141.17	142.44	0					41	24	2	0	0	0	0.73795	1	54208	54208		1.3295	0	1	1886700	+		60573	24577	44179	44527	59008	59008					0.10701313286108416
VSSVRWISY	9	Unmodified	_VSSVRWISY_					0	0	0		ENST00000285124.12_1_18:9547789-9562973:-|nuORF;nc|ENSG00000154845|Q8TF05-2|PPP4R1;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000582594.5_1_18:9547789-9550464:-|nuORF;ENST00000578010.1_1_18:9550007-9550464:-|nuORF	ENST00000285124.12_1_18:9547789-9562973:-|nuORF	ENST00000285124.12_1_18:9547789-9562973:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	549.192138671875	2	548.792924	1095.57129	-0.43579	-0.00023916	-0.47362	-0.00025992	-0.90941	-0.00049908	548.7927455861061	70.42	0.46127	70.42	70.237	70.698	0					19	8	3	0	0	0	0.061442	1	25558	25558		82.529	27.756	1	6550500			60574	6113	44180	44528	59009	59009					0.027331453345595946
VSSVRWISY	9	Unmodified	_VSSVRWISY_					0	0	0		ENST00000285124.12_1_18:9547789-9562973:-|nuORF;nc|ENSG00000154845|Q8TF05-2|PPP4R1;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000582594.5_1_18:9547789-9550464:-|nuORF;ENST00000578010.1_1_18:9550007-9550464:-|nuORF	ENST00000285124.12_1_18:9547789-9562973:-|nuORF	ENST00000285124.12_1_18:9547789-9562973:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	548.2440795898438	2	548.792924	1095.57129	-0.70471	-0.00038674	0.0055997	3.0731E-06	-0.69911	-0.00038366	548.7928525292385	69.709	0.60991	70.443	70.183	70.793	0.73421					24	11	3	0	0	0	0.11887	1	26397	26397		71.708	29.613	1	7724000			60575	6113	44180	44528	59010	59010					0.027331453345595946
VSSVTVWLAH	10	Unmodified	_VSSVTVWLAH_					0	0	0			REV__nc|ENSG00000162631|Q9Y2I2-2|NTNG1	REV__nc|ENSG00000162631|Q9Y2I2-2|NTNG1	MULTI-SECPEP	A375_MHC_IP_R2	2	366.6484680175781	3	366.869591	1097.58694	0.044065	1.6166E-05	-2.5658	-0.00094131	-2.5217	-0.00092515	366.8676042208688	44.701	0.457	45.47	45.086	45.543	0.76909					10	8	2	0	0	0	0.91556	1	16690	16690		8.9762	6.2411	1	587350	+		60576	20281	44181	44529	59011	59011					0.04205431851596586
VSSWDPCDLD	10	Unmodified	_VSSWDPCDLD_					0	0	0			REV__chr15:75338100-75338355|124|16.1|0.57|4.82|+|0|None,COMMD4|1	REV__chr15:75338100-75338355|124|16.1|0.57|4.82|+|0|None,COMMD4|1	MULTI-MSMS	A375_MHC_IP_R2	2	568.6846313476562	2	568.731871	1135.44919	-0.4651	-0.00026452	0.57556	0.00032734	0.11046	6.2822E-05	568.7323085400818	40.473	0.55878	41.247	41.031	41.59	0.77451					16	10	2	0	0	0	0.70496	1	15072	15072		10.074	1.3285	1	1113400	+		60577	15714	44182	44530	59012	59012					-0.11311684529982813
VSTAVIVFELT	11	Unmodified	_VSTAVIVFELT_					0	0	0		nc|ENSG00000114859|P51788-4|CLCN2;nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2	nc|ENSG00000114859|P51788-4|CLCN2	nc|ENSG00000114859|P51788-4|CLCN2	MULTI-SECPEP	A375_MHC_IP_R1	1	589.203857421875	2	589.836997	1177.65944	0.19422	0.00011456	0.46041	0.00027157	0.65463	0.00038612	589.8373959388487	69.554	0.25346	69.554	69.478	69.732	0					6	4	2	0	0	0	0.9754	1	25227	25227		17.113	8.9574	1	1291700			60578	3252	44183	44531	59013	59013					0.0777172113450888
VSTFLMSLRQ	10	Unmodified	_VSTFLMSLRQ_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-MSMS	A375_MHC_IP_R2	2	394.60858154296875	3	394.549753	1180.62743	-0.53652	-0.00021168	0.40219	0.00015868	-0.13433	-5.2999E-05	394.88421838416184	38.501	0.50899	39.276	39.047	39.556	0.77451					15	9	2	0	0	0	0.69306	1	14090	14090		12.175	3.1985	1	2766600			60579	1303	44184	44532	59014	59014					0.04434030179709225
VSTLCQKV	8	Unmodified	_VSTLCQKV_					0	0	0			REV__ENST00000414292.5_1_7:99935872-99936563:+|nuORF	REV__ENST00000414292.5_1_7:99935872-99936563:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	439.64361572265625	2	439.244221	876.473888	-0.0064726	-2.843E-06	-0.50263	-0.00022078	-0.5091	-0.00022362	439.24390330465235	35.265	0.55944	35.265	34.963	35.522	0					21	10	3	0	0	0	0.73563	1	11667	11667		28.487	0	1	5978000	+		60580	24504	44185	44533	59015	59015					0.030710401340684257
VSTLKPSL	8	Unmodified	_VSTLKPSL_					0	0	0		ENST00000301204.7_1_19:42828913-42829189:+|nuORF	ENST00000301204.7_1_19:42828913-42829189:+|nuORF	ENST00000301204.7_1_19:42828913-42829189:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	423.1603698730469	2	422.760561	843.506569	-0.038364	-1.6219E-05	-0.25697	-0.00010864	-0.29534	-0.00012486	422.7604211068518	69.385	0.60829	70.119	69.829	70.437	0.73421					27	11	3	0	0	0	0.16381	1	26252	26252		81.613	2.885	1	5048800			60581	10543	44186	44534	59016	59016					0.07855570528568023
VSTLQLRKY	9	Unmodified	_VSTLQLRKY_					0	0	0			REV__ENST00000488538.1_1_4:83412536-83412710:-|nuORF	REV__ENST00000488538.1_1_4:83412536-83412710:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	370.28875732421875	3	369.888874	1106.64479	-0.0038002	-1.4057E-06	-0.12939	-4.7861E-05	-0.13319	-4.9266E-05	369.8887736157961	19.873	0.40322	20.484	20.349	20.752	0.61029					12	7	2	0	0	0	0.55359	1	6187	6187		15.248	11.929	1	963890	+		60582	25353	44187	44535	59017	59017					0.09573693777042536
VSTLVLLLVI	10	Unmodified	_VSTLVLLLVI_					0	0	0		ENST00000498732.5_1_X:139854376-139854580:+|nuORF	ENST00000498732.5_1_X:139854376-139854580:+|nuORF	ENST00000498732.5_1_X:139854376-139854580:+|nuORF	MSMS	A375_MHC_IP_R1	1	357.31329345703125	3	357.245888	1068.71583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.041	1	30.041	29.541	30.541	0								0	0	0	0.15365	1	9492	9492		8.9762	0	1				60583	12767	44188	44536	59018	59018					0.18422393761852618
VSTLVLLLVI	10	Unmodified	_VSTLVLLLVI_					0	0	0		ENST00000498732.5_1_X:139854376-139854580:+|nuORF	ENST00000498732.5_1_X:139854376-139854580:+|nuORF	ENST00000498732.5_1_X:139854376-139854580:+|nuORF	MSMS	A375_MHC_IP_R1	1	357.3129577636719	3	357.245888	1068.71583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.27	1	30.27	29.77	30.77	0								0	0	0	0.15531	1	9596	9596		3.5871	0	1				60584	12767	44188	44536	59019	59019					0.18422393761852618
VSTMRRSPAY	10	Unmodified	_VSTMRRSPAY_					0	0	0			REV__ENSG00000070018|ENST00000261349|LRP6	REV__ENSG00000070018|ENST00000261349|LRP6	MULTI-MSMS	A375_MHC_IP_R1	1	585.2015380859375	2	584.30059	1166.58663	-0.28632	-0.0001673	-0.30462	-0.00017799	-0.59094	-0.00034529	584.3005553292649	28.34	0.55478	28.34	28.037	28.592	0					26	10	4	0	0	0	0.70496	1	8723	8723		10.074	0.6908	1	10328000	+		60585	16562	44189	44537	59020	59020					0.009996888601108367
VSTPDRKL	8	Unmodified	_VSTPDRKL_					0	0	0			REV__ENST00000425869.1_22:16650633-16650708:+|nuORF	REV__ENST00000425869.1_22:16650633-16650708:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	457.98675537109375	2	458.266542	914.51853	-0.51198	-0.00023462	-0.27203	-0.00012466	-0.78402	-0.00035929	458.2664974407441	37.781	0.40881	38.556	38.33	38.739	0.77451					19	7	3	0	0	0	0.84294	1	13872	13872		24.021	2.2739	1	6886800	+		60586	24641	44190	44538	59021	59021					0.05785187271760606
VSTRNLNPND	10	Unmodified	_VSTRNLNPND_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	A375_MHC_IP_R1	1	565.1819458007812	2	565.283451	1128.55235	-0.42637	-0.00024102	0.61396	0.00034706	0.18759	0.00010604	565.2838382914998	93.97	0.80775	93.97	93.484	94.291	0					31	15	3	0	0	0	0.6502	1	34504	34504		17.113	0.026346	1	4523500			60587	1649	44191	44539	59022	59022					-0.006784360271467449
VSTSGEQMKV	10	Unmodified	_VSTSGEQMKV_					0	0	0		nc|ENSG00000185811|Q13422-6|IKZF1;nc|ENSG00000185811|Q13422-5|IKZF1;nc|ENSG00000185811|Q13422-4|IKZF1;nc|ENSG00000185811|Q13422-3|IKZF1;nc|ENSG00000185811|Q13422-2|IKZF1;nc|ENSG00000185811|Q13422-7|IKZF1;ENSG00000185811|ENST00000331340|IKZF1	nc|ENSG00000185811|Q13422-6|IKZF1	nc|ENSG00000185811|Q13422-6|IKZF1	MULTI-MSMS	A375_MHC_IP_R1	1	534.6848754882812	2	533.265881	1064.51721	-0.83611	-0.00044587	-1.4398	-0.00076781	-2.2759	-0.0012137	533.2641764952715	27.799	0.80644	27.799	27.432	28.238	0					52	15	5	0	0	0	0.69833	1	8410	8410		13.042	0.16986	1	16502000			60588	8694	44192	44540	59023	59023					-0.01246814879300473
VSTSGFLKSIS	11	Unmodified	_VSTSGFLKSIS_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-SECPEP	A375_MHC_IP_R2	2	563.1876831054688	2	563.311146	1124.60774	-0.846	-0.00047656	0.18028	0.00010155	-0.66573	-0.00037501	563.3112545239666	19.93	0.60743	20.54	20.248	20.855	0.61029					18	11	2	0	0	0	0.9889	1	6219	6219		4.897	1.6157	1	1607800			60589	1349	44193	44541	59024	59024					0.05041977440600931
VSVAERVAF	9	Unmodified	_VSVAERVAF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	A375_MHC_IP_R1	1	489.67413330078125	2	489.274367	976.53418	-0.20805	-0.0001018	-0.013162	-6.4397E-06	-0.22122	-0.00010824	489.2744388743074	56.829	0.56065	56.829	56.65	57.211	0					20	10	3	0	0	0	0.16595	1	20399	20399		53.404	13.454	1	1993000			60590	4716	44194	44542	59025	59025					0.04497473788808293
VSVAERVAF	9	Unmodified	_VSVAERVAF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	A375_MHC_IP_R2	2	489.67376708984375	2	489.274367	976.53418	-0.7636	-0.00037361	-0.095458	-4.6705E-05	-0.85906	-0.00042032	489.27435624050634	56.026	0.66384	56.776	56.54	57.203	0.75015					21	12	3	0	0	0	0.076731	1	21176	21176		71.708	27.936	1	1934100			60591	4716	44194	44542	59026	59026					0.04497473788808293
VSVCIVVIHSV	11	Unmodified	_VSVCIVVIHSV_					0	0	0		ENST00000413432.2_1_2:242383334-242383583:+|nuORF	ENST00000413432.2_1_2:242383334-242383583:+|nuORF	ENST00000413432.2_1_2:242383334-242383583:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	385.2924499511719	3	385.558248	1153.65292	-0.52622	-0.00020289	-0.95323	-0.00036752	-1.4795	-0.00057041	385.55727562905525	24.898	0.30439	25.542	25.263	25.568	0.64368					6	5	2	0	0	0	0.99411	1	8176	8176		4.1166	0	1	1446800			60592	11657	44195	44543	59027	59027					0.08223504702141327
VSVDKQQQW	9	Unmodified	_VSVDKQQQW_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-SECPEP	A375_MHC_IP_R1	1	559.1513061523438	2	559.285463	1116.55637	-0.71191	-0.00039816	2.3451	0.0013116	1.6332	0.0009134	559.2873016730713	32.53	0.76133	32.53	32.024	32.785	0					21	14	2	0	0	0	0.036647	1	10558	10558		83.429	35.68	1	5338400			60593	6149	44196	44544	59028	59028					0.002756534665650179
VSVDTARTL	9	Unmodified	_VSVDTARTL_					0	0	0		ENSG00000140379|ENST00000267953|BCL2A1;nc|ENSG00000140379|Q16548-2|BCL2A1	ENSG00000140379|ENST00000267953|BCL2A1	ENSG00000140379|ENST00000267953|BCL2A1	MULTI-MSMS	A375_MHC_IP_R1	1	481.6693115234375	2	481.269281	960.52401	-0.20455	-9.8445E-05	-0.078205	-3.7637E-05	-0.28276	-0.00013608	481.26921356091657	37.47	0.35775	37.47	37.301	37.658	0					10	6	2	0	0	0	0.12748	1	12666	12666		45.74	7.7659	1	2725000			60594	5148	44197	44545	59029	59029					0.04216866063575253
VSVDTARTL	9	Unmodified	_VSVDTARTL_					0	0	0		ENSG00000140379|ENST00000267953|BCL2A1;nc|ENSG00000140379|Q16548-2|BCL2A1	ENSG00000140379|ENST00000267953|BCL2A1	ENSG00000140379|ENST00000267953|BCL2A1	MULTI-SECPEP	A375_MHC_IP_R2	2	481.6685485839844	2	481.269281	960.52401	-1.0278	-0.00049464	-0.00052292	-2.5166E-07	-1.0283	-0.00049489	481.26913832349567	36.701	0.30635	37.471	37.308	37.615	0.7709					10	5	2	0	0	0	0.23313	1	13399	13399		49.527	16.742	1	2141500			60595	5148	44197	44545	59030	59030					0.04216866063575253
VSVGIWSI	8	Unmodified	_VSVGIWSI_					0	0	0			REV__SIGLEC8|p.A194V|1|0.21|ENSG00000105366|chr19:51457613-51457613|G/A|missense_variant	REV__SIGLEC8|p.A194V|1|0.21|ENSG00000105366|chr19:51457613-51457613|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	430.59832763671875	2	430.747453	859.480354	-0.72761	-0.00031342	-0.028064	-1.2088E-05	-0.75567	-0.0003255	430.747941449615	36.716	0.50906	37.487	37.258	37.767	0.7709					13	9	2	0	0	0	0.94479	1	13439	13439		8.5933	0	1	1626600	+		60596	27965	44198	44546	59031	59031					0.04499301357088825
VSVGVGGGGG	10	Unmodified	_VSVGVGGGGG_					0	0	0			REV__nc|ENSG00000107951|Q9NVV4-2|MTPAP	REV__nc|ENSG00000107951|Q9NVV4-2|MTPAP	MSMS	A375_MHC_IP_R1	1	373.2220764160156	2	373.195585	744.376617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.821	1	18.821	18.321	19.321	0								0	0	0	0.15642	1	4513	4513		0	0	1		+		60597	25347	44199	44547	59032	59032					-0.005796057505449426
VSVGYEYET	9	Unmodified	_VSVGYEYET_					0	0	0		nc|ENSG00000009694|Q9UKZ4-2|TENM1;ENSG00000009694|ENST00000371130|TENM1	nc|ENSG00000009694|Q9UKZ4-2|TENM1	nc|ENSG00000009694|Q9UKZ4-2|TENM1	MULTI-MSMS	A375_MHC_IP_R2	2	1046.867919921875	1	1046.46768	1045.46041	-0.29024	-0.00030373	0.14513	0.00015187	-0.14511	-0.00015186	1046.467743673317	59.98	1.1171	60.727	60.299	61.416	0.74714					71	21	5	0	0	0	0.35581	1	22958	22958		26.884	0	1	120260000			60598	969	44200	44548	59033	59033					-0.06050539164175461
VSVGYEYET	9	Unmodified	_VSVGYEYET_					0	0	0		nc|ENSG00000009694|Q9UKZ4-2|TENM1;ENSG00000009694|ENST00000371130|TENM1	nc|ENSG00000009694|Q9UKZ4-2|TENM1	nc|ENSG00000009694|Q9UKZ4-2|TENM1	MULTI-MATCH	A375_MHC_IP_R1	1		1	1046.46768	1045.46041	0.13963	0.00014611	-0.13041	-0.00013647	0.0092182	9.6466E-06	1046.4674139843496	60.54	1.1713	60.54	60.159	61.331	0	-0.093496	-0.00016197	NaN	26.884	65	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110840000			60599	969	44200	44548							-0.06050539164175461
VSVKKRKK	8	Unmodified	_VSVKKRKK_					0	0	0		ENST00000274458.8_1_5:115426776-115426833:+|nuORF	ENST00000274458.8_1_5:115426776-115426833:+|nuORF	ENST00000274458.8_1_5:115426776-115426833:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	973.3968505859375	1	972.66766	971.660384	0.25463	0.00024767	-3.8059	-0.0037019	-3.5513	-0.0034542	972.6649939876643	111.13	0.15498	111.13	111.05	111.21	0					4	2	2	0	0	0	0.972	1	40761	40761		0.6015	0	1	1906500			60600	10400	44201	44549	59034	59034					0.17342025084747092
VSVKTEVK	8	Unmodified	_VSVKTEVK_					0	0	0			REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-SECPEP	A375_MHC_IP_R2	2	445.6710510253906	2	445.271293	888.528032	-0.42417	-0.00018887	0.067914	3.024E-05	-0.35626	-0.00015863	445.27128417595986	39.864	0.45731	40.639	40.422	40.879	0.77451					13	8	2	0	0	0	0.90775	1	14773	14773		26.884	0	1	3395000	+		60601	16654	44202	44550	59035	59035					0.07930955557287689
VSVNKRISF	9	Unmodified	_VSVNKRISF_					0	0	0		nc|ENSG00000103995|O94986-1|CEP152;nc|ENSG00000103995|O94986-2|CEP152;ENSG00000103995|ENST00000380950|CEP152;nc|ENSG00000103995|O94986-3|CEP152	nc|ENSG00000103995|O94986-1|CEP152	nc|ENSG00000103995|O94986-1|CEP152	MULTI-SECPEP	A375_MHC_IP_R1	1	525.70849609375	2	525.308741	1048.60293	-0.47874	-0.00025149	-1.1425	-0.00060018	-1.6213	-0.00085166	525.308172022908	31.829	0.40832	31.829	31.667	32.075	0					12	7	2	0	0	0	0.67539	1	10265	10265		21.537	5.6898	1	2987900			60602	2478	44203	44551	59036	59036					0.08057138088497595
VSVNKRISF	9	Unmodified	_VSVNKRISF_					0	0	0		nc|ENSG00000103995|O94986-1|CEP152;nc|ENSG00000103995|O94986-2|CEP152;ENSG00000103995|ENST00000380950|CEP152;nc|ENSG00000103995|O94986-3|CEP152	nc|ENSG00000103995|O94986-1|CEP152	nc|ENSG00000103995|O94986-1|CEP152	MULTI-MATCH	A375_MHC_IP_R2	2		2	525.308741	1048.60293	-0.52197	-0.00027419	-0.038726	-2.0343E-05	-0.56069	-0.00029454	525.3086391192776	31.025	0.30415	31.743	31.567	31.872	0.71857	-0.042871	7.8995E-05	NaN	20.415	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1251500			60603	2478	44203	44551							0.08057138088497595
VSVRENVLV	9	Unmodified	_VSVRENVLV_					0	0	0		PCDHGA4|p.P287L|1|0.37|ENSG00000262576|chr5:141355967-141355967|C/T|missense_variant	PCDHGA4|p.P287L|1|0.37|ENSG00000262576|chr5:141355967-141355967|C/T|missense_variant	PCDHGA4|p.P287L|1|0.37|ENSG00000262576|chr5:141355967-141355967|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	508.20111083984375	2	507.800749	1013.58694	0.064284	3.2643E-05	-0.4352	-0.000221	-0.37092	-0.00018835	507.80050273245257	69.313	1.164	69.313	68.769	69.933	0					40	22	3	0	0	0	0.34746	1	25123	25123		24.991	4.5373	1	8968600			60604	15138	44204	44552	59037	59037					0.08069431851617992
VSVRRYRLF	9	Unmodified	_VSVRRYRLF_					0	0	0		ENST00000525188.5_1_11:20409237-20415368:+|nuORF	ENST00000525188.5_1_11:20409237-20415368:+|nuORF	ENST00000525188.5_1_11:20409237-20415368:+|nuORF	MSMS	A375_MHC_IP_R1	1	598.2556762695312	2	598.356557	1194.69856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.65	1	130.65	130.15	131.15	0								0	0	0	0.15486	1	50309	50309		4.3292	0	1				60605	13067	44205	44553	59038	59038					0.10899910999410167
VSVSAVTW	8	Unmodified	_VSVSAVTW_					0	0	0			REV__nc|ENSG00000024048|Q8IWV8|UBR2	REV__nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-SECPEP	A375_MHC_IP_R2	2	425.1297607421875	2	424.729261	847.443968	-0.011154	-4.7375E-06	-0.2136	-9.0721E-05	-0.22475	-9.5459E-05	424.7291434023305	43.466	1.1619	44.238	43.674	44.836	0.7724					32	22	2	0	0	0	0.86765	1	16220	16220		18.135	5.6034	1	1432200	+		60606	16285	44206	44554	59039	59039					0.014144244603699008
VSVSAVTW	8	Unmodified	_VSVSAVTW_					0	0	0			REV__nc|ENSG00000024048|Q8IWV8|UBR2	REV__nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MATCH	A375_MHC_IP_R1	1		2	424.729261	847.443968	0.082211	3.4918E-05	-0.18291	-7.7686E-05	-0.1007	-4.2769E-05	424.72909859240497	44.33	0.96855	44.33	43.859	44.827	0	0.045806	1.0462E-05	NaN	18.135	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1287200	+		60607	16285	44206	44554							0.014144244603699008
VSWFSYWW	8	Unmodified	_VSWFSYWW_					0	0	0		ENST00000305632.9_1_7:72984677-72984785:-|nuORF	ENST00000305632.9_1_7:72984677-72984785:-|nuORF	ENST00000305632.9_1_7:72984677-72984785:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	581.1244506835938	2	580.763635	1159.51272	-0.28382	-0.00016484	1.7704	0.0010282	1.4866	0.00086334	580.7647079068554	41.84	0.30676	42.615	42.504	42.811	0.77451					9	5	2	0	0	0	0.95423	1	15609	15609		18.135	8.0611	1	1116700			60608	10571	44207	44555	59040	59040					-0.060659112399207515
VSWISSIMLAV	11	Unmodified	_VSWISSIMLAV_					0	0	0		nc|ENSG00000155380|P53985-2|SLC16A1;ENSG00000155380|ENST00000369626|SLC16A1	nc|ENSG00000155380|P53985-2|SLC16A1	nc|ENSG00000155380|P53985-2|SLC16A1	MULTI-MSMS	A375_MHC_IP_R1	1	402.5800476074219	3	402.558137	1204.65258	-0.27911	-0.00011236	4.0553	0.0016325	3.7762	0.0015201	402.8946394464109	23.021	0.80924	23.021	22.673	23.483	0					33	15	4	0	0	0	0.73679	1	6133	6133		2.4348	0.69251	1	6708300			60609	6141	44208	44556	59041	59041					0.05844084982277309
VSWPLVLMI	9	Unmodified	_VSWPLVLMI_					0	0	0		PLLP|p.P99S|1|0.36|ENSG00000102934|chr16:57261911-57261911|G/A|missense_variant	PLLP|p.P99S|1|0.36|ENSG00000102934|chr16:57261911-57261911|G/A|missense_variant	PLLP|p.P99S|1|0.36|ENSG00000102934|chr16:57261911-57261911|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	528.638671875	2	529.309364	1056.60417	-0.56986	-0.00030163	-3.1775	-0.0016819	-3.7474	-0.0019835	529.3088114510733	75.549	0.61308	76.29	76.078	76.691	0.74052					14	11	2	0	0	0	0.73363	1	28783	28783		15.847	9.124	1	906040			60610	15199	44209	44557	59042	59042					0.0781363613305075
VSWQTLHV	8	Unmodified	_VSWQTLHV_					0	0	0			REV__tr|U7SKL3|U7SKL3_FUSNUThymidylatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thyAPE=3SV=1	REV__tr|U7SKL3|U7SKL3_FUSNUThymidylatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thyAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	485.6629943847656	2	485.261259	968.507966	-0.32211	-0.00015631	0.082812	4.0185E-05	-0.2393	-0.00011612	485.2612782136426	80.031	0.45955	80.031	79.728	80.187	0					15	8	2	0	0	0	0.94479	1	29113	29113		13.508	3.3245	1	1423700	+		60611	28257	44210	44558	59043	59043					0.0224520461732709
VSWTWRRT	8	Unmodified	_VSWTWRRT_					0	0	0			REV__ENST00000300648.6_1_12:120615530-120616501:-|nuORF	REV__ENST00000300648.6_1_12:120615530-120616501:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	364.9295959472656	3	364.52968	1090.56721	0.31657	0.0001154	0.37579	0.00013699	0.69236	0.00025239	364.5294715119096	40.634	0.60683	40.634	40.406	41.013	0					16	11	2	0	0	0	0.9187	1	13992	13992		26.268	14.041	1	4789500	+		60612	23413	44211	44559	59044	59044					0.025551006315026825
VSWWVWRSRRR	11	Unmodified	_VSWWVWRSRRR_					0	0	0		ENST00000262160.10_3_18:45423005-45423077:-|nuORF	ENST00000262160.10_3_18:45423005-45423077:-|nuORF	ENST00000262160.10_3_18:45423005-45423077:-|nuORF	MSMS	A375_MHC_IP_R1	1	787.429443359375	2	787.434193	1572.85383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.89	1	132.89	132.39	133.39	0								0	0	0	0.16351	1	51243	51243		0.30703	0	1				60613	10293	44212	44560	59045	59045					0.09031954853662683
VSYFAGTMIGY	11	Unmodified	_VSYFAGTMIGY_					0	0	0			REV__ENSG00000162769|ENST00000366971|FLVCR1	REV__ENSG00000162769|ENST00000366971|FLVCR1	MULTI-SECPEP	A375_MHC_IP_R1	1	404.29571533203125	3	403.526725	1207.55835	-0.61686	-0.00024892	-0.04236	-1.7093E-05	-0.65922	-0.00026601	403.52671966110074	23.354	0.25585	23.354	23.227	23.483	0					6	4	2	0	0	0	0.99227	1	6433	6433		1.2148	0	1	484450	+		60614	20306	44213	44561	59046	59046					-0.037130538398514545
VSYKGSISY	9	Unmodified	_VSYKGSISY_					0	0	0		ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1;SAMD1|p.P333Dfs*27|1|0.12|ENSG00000141858|chr19:14088912-14088913|-/CG|frameshift_variant	ENSG00000141858|ENST00000533683|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	MULTI-SECPEP	A375_MHC_IP_R1	1	502.6582336425781	2	502.258382	1002.50221	-0.42568	-0.0002138	0.38756	0.00019465	-0.038123	-1.9148E-05	502.25847524087027	37.755	0.40787	37.755	37.556	37.964	0					13	7	2	0	0	0	0.56537	1	12821	12821		17.113	0	1	2282200			60615	5274	44214	44562	59047	59047					0.0010606131500026095
VSYKGSISY	9	Unmodified	_VSYKGSISY_					0	0	0		ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1;SAMD1|p.P333Dfs*27|1|0.12|ENSG00000141858|chr19:14088912-14088913|-/CG|frameshift_variant	ENSG00000141858|ENST00000533683|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	MULTI-SECPEP	A375_MHC_IP_R2	2	502.658203125	2	502.258382	1002.50221	-1.2874	-0.00064662	0.81513	0.00040941	-0.47229	-0.00023721	502.2587712898079	37.021	0.45592	37.792	37.564	38.02	0.7709					13	8	2	0	0	0	0.14606	1	13577	13577		63.961	33.736	1	4844500			60616	5274	44214	44562	59048	59048					0.0010606131500026095
VSYLRAKSF	9	Unmodified	_VSYLRAKSF_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	A375_MHC_IP_R1	1	357.9377136230469	3	357.537953	1069.59203	0.2621	9.371E-05	-0.99842	-0.00035697	-0.73632	-0.00026326	357.53769481332375	35.78	0.40905	35.78	35.573	35.982	0					18	7	3	0	0	0	0.16286	1	11946	11946		40.725	19.135	1	3506100			60617	2697	44215	44563	59049	59049					0.06001735714221468
VSYLRAKSF	9	Unmodified	_VSYLRAKSF_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	A375_MHC_IP_R2	2	357.9377746582031	3	357.537953	1069.59203	-0.41618	-0.0001488	0.070903	2.535E-05	-0.34527	-0.00012345	357.53788512572714	34.846	0.45314	35.61	35.425	35.878	0.76338					24	8	4	0	0	0	0.39657	2	12630	12590;12630		24.882	4.3006	1	2921100			60618	2697	44215	44563	59050;59051	59051					0.06001735714221468
VSYSARIPS	9	Unmodified	_VSYSARIPS_					0	0	0			REV__ENSG00000037749|ENST00000522782|MFAP3	REV__ENSG00000037749|ENST00000522782|MFAP3	MULTI-SECPEP	A375_MHC_IP_R2	2	490.6817321777344	2	490.263999	978.513445	-0.83581	-0.00040977	0.46793	0.00022941	-0.36788	-0.00018036	490.2643911366873	56.205	0.56036	56.955	56.796	57.356	0.75015					13	10	2	0	0	0	0.65527	1	21323	21323		12.241	6.5088	1	1299500	+		60619	16325	44216	44564	59052	59052					0.023328834091330464
VTAARLGG	8	Unmodified	_VTAARLGG_					0	0	0			REV__nc|ENSG00000179344|P01920|HLA-DQB1	REV__nc|ENSG00000179344|P01920|HLA-DQB1	MULTI-SECPEP	A375_MHC_IP_R1	1	373.1224060058594	2	372.72177	743.428987	0.016276	6.0663E-06	1.3878	0.00051727	1.4041	0.00052334	372.7224833010328	137.63	0.45967	137.63	137.33	137.79	0					13	8	2	0	0	0	0.972	1	52984	52984		0.69038	0	1	1405000	+		60620	27383	44217	44565	59053	59053					0.04700977383060945
VTAARLGG	8	Unmodified	_VTAARLGG_					0	0	0			REV__nc|ENSG00000179344|P01920|HLA-DQB1	REV__nc|ENSG00000179344|P01920|HLA-DQB1	MULTI-MATCH	A375_MHC_IP_R2	2		2	372.72177	743.428987	0.62796	0.00023405	0.13629	5.0798E-05	0.76425	0.00028485	372.72219692615926	137.58	0.61282	137.66	137.15	137.76	0.083969	0.016985	-0.00054809	NaN	0.69038	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	783110	+		60621	27383	44217	44565							0.04700977383060945
VTAATQFTIY	10	Unmodified	_VTAATQFTIY_					0	0	0			REV__LAMP3|p.H72Y|1|0.69|ENSG00000078081|chr3:183154227-183154227|G/A|missense_variant	REV__LAMP3|p.H72Y|1|0.69|ENSG00000078081|chr3:183154227-183154227|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	558.1884765625	2	557.792589	1113.57063	-0.37493	-0.00020913	-2.3483	-0.0013099	-2.7233	-0.001519	557.7891180244577	49.89	2.0851	49.89	49.033	51.119	0					95	40	4	0	0	0	0.48529	1	17446	17446		29.082	6.3453	1	4293900	+		60622	26915	44218	44566	59054	59054					0.01838305894852965
VTAATQFTIY	10	Unmodified	_VTAATQFTIY_					0	0	0			REV__LAMP3|p.H72Y|1|0.69|ENSG00000078081|chr3:183154227-183154227|G/A|missense_variant	REV__LAMP3|p.H72Y|1|0.69|ENSG00000078081|chr3:183154227-183154227|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	558.5623779296875	2	557.792589	1113.57063	-0.95072	-0.0005303	-1.6603	-0.00092608	-2.611	-0.0014564	557.7893460560659	49.292	2.0305	50.049	49.03	51.061	0.75737					90	39	3	0	0	0	0.74754	1	18247	18247		22.736	14.581	1	4020000	+		60623	26915	44218	44566	59055	59055					0.01838305894852965
VTAAWGPQHCC	11	Unmodified	_VTAAWGPQHCC_					0	0	0		ENST00000379031.9_1_1:1246719-1247037:+|nuORF	ENST00000379031.9_1_1:1246719-1247037:+|nuORF	ENST00000379031.9_1_1:1246719-1247037:+|nuORF	MSMS	A375_MHC_IP_R2	2	586.7144775390625	2	586.752418	1171.49028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.737	1	53.488	52.988	53.988	0.75105								0	0	0	0.14647	1	19884	19884		22.736	2.2827	1				60624	11322	44219	44567	59056	59056					-0.08860201971469905
VTADEDTTF	9	Unmodified	_VTADEDTTF_					0	0	0			REV__nc|ENSG00000139636|Q6UX01-2|LMBR1L	REV__nc|ENSG00000139636|Q6UX01-2|LMBR1L	MULTI-SECPEP	A375_MHC_IP_R1	1	500.4744873046875	2	499.719287	997.424021	-0.33209	-0.00016595	0.35011	0.00017496	0.018021	9.0055E-06	500.22046662777433	102.56	0.30301	102.56	102.4	102.71	0					7	5	2	0	0	0	0.65246	1	37701	37701		10.824	1.4765	1	510970	+		60625	27257	44220	44568	59057	59057					-0.07479416060891708
VTADIYSDV	9	Unmodified	_VTADIYSDV_					0	0	0		ENST00000452622.1_1_7:562316-563757:+|nuORF	ENST00000452622.1_1_7:562316-563757:+|nuORF	ENST00000452622.1_1_7:562316-563757:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	491.1815490722656	2	491.740022	981.465492	-0.43994	-0.00021634	0.9397	0.00046209	0.49976	0.00024575	491.73979975494194	80.882	0.40741	80.882	80.693	81.1	0					10	7	2	0	0	0	0.69504	1	29571	29571		7.9102	0	1	506080			60626	12085	44221	44569	59058	59058					-0.025982353015592707
VTADIYSDV	9	Unmodified	_VTADIYSDV_					0	0	0		ENST00000452622.1_1_7:562316-563757:+|nuORF	ENST00000452622.1_1_7:562316-563757:+|nuORF	ENST00000452622.1_1_7:562316-563757:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	491.740022	981.465492	-0.52809	-0.00025968	-0.80975	-0.00039818	-1.3378	-0.00065787	491.7397325023463	80.303	0.30228	81.048	80.81	81.112	0.74474	0.08313	-0.0002441	NaN	7.9102	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	874800			60627	12085	44221	44569							-0.025982353015592707
VTADVAALV	9	Unmodified	_VTADVAALV_					0	0	0			REV__ENSG00000065485|ENST00000316218|PDIA5	REV__ENSG00000065485|ENST00000316218|PDIA5	MULTI-MSMS	A375_MHC_IP_R2	2	858.5154418945312	1	858.49311	857.485833	-0.41736	-0.0003583	-0.42845	-0.00036782	-0.84581	-0.00072613	858.4926391436687	99.398	0.61207	100.16	99.858	100.47	0.75977					26	11	3	0	0	0	0.050162	1	37788	37788		64.236	6.765	1	12200000	+		60628	16499	44222	44570	59059	59059					0.051389801488994635
VTADVAALV	9	Unmodified	_VTADVAALV_					0	0	0			REV__ENSG00000065485|ENST00000316218|PDIA5	REV__ENSG00000065485|ENST00000316218|PDIA5	MULTI-MATCH	A375_MHC_IP_R1	1		1	858.49311	857.485833	-0.29543	-0.00025363	-0.0011812	-1.014E-06	-0.29661	-0.00025464	858.4930806320951	100.21	0.96301	100.21	99.925	100.89	0	0.027615	0.00021019	NaN	64.236	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12002000	+		60629	16499	44222	44570							0.051389801488994635
VTADVAALV	9	Unmodified	_VTADVAALV_					0	0	0			REV__ENSG00000065485|ENST00000316218|PDIA5	REV__ENSG00000065485|ENST00000316218|PDIA5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	858.49311	857.485833	-0.41736	-0.0003583	-0.42845	-0.00036782	-0.84581	-0.00072613	858.4926391436687	99.398	0.61207	100.16	99.858	100.47	0.75977	-0.027615	-0.00015662	NaN	64.236	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12200000	+		60630	16499	44222	44570							0.051389801488994635
VTAEEAKKF	9	Unmodified	_VTAEEAKKF_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-SECPEP	A375_MHC_IP_R1	1	512.1790771484375	2	511.779482	1021.54441	-0.40268	-0.00020608	0.51045	0.00026124	0.10777	5.5153E-05	511.7796805052422	70.774	0.56224	70.774	70.545	71.108	0					26	10	3	0	0	0	0.11436	1	25682	25682		49.933	0	1	22516000			60631	1690	44223	44571	59060	59060					0.034500367233818
VTAENIFVD	9	Unmodified	_VTAENIFVD_					0	0	0		ENST00000600284.5_1_19:50490096-50500767:-|nuORF;nc|ENSG00000105053|Q8IV63-2|VRK3;ENST00000594090.5_1_19:50491627-50519408:-|nuORF;nc|ENSG00000105053|Q8IV63-3|VRK3;ENSG00000105053|ENST00000316763|VRK3	ENST00000600284.5_1_19:50490096-50500767:-|nuORF	ENST00000600284.5_1_19:50490096-50500767:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	504.16876220703125	2	504.25584	1006.49713	-1.0633	-0.00053618	2.496	0.0012586	1.4327	0.00072247	504.25491480379424	57.193	0.30608	57.943	57.815	58.121	0.75015					6	5	2	0	0	0	0.67483	1	21682	21682		14.838	6.9281	1	533000			60632	2564	44224	44572	59061	59061					-0.005862425476038879
VTAEPRGRL	9	Unmodified	_VTAEPRGRL_					0	0	0			REV__ENST00000361523.8_1_17:40976209-40976266:-|nuORF	REV__ENST00000361523.8_1_17:40976209-40976266:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	498.9930114746094	2	499.790715	997.566878	-1.1707	-0.00058511	0.49634	0.00024807	-0.67438	-0.00033705	499.7909075686498	29.63	0.25082	30.328	30.134	30.385	0.69872					6	4	2	0	0	0	0.78798	1	10324	10324		3.9444	1.0552	1	1473100	+		60633	23916	44225	44573	59062	59062					0.06799680911672112
VTAEQSKAESM	11	Unmodified	_VTAEQSKAESM_					0	0	0		ENST00000585990.5_1_17:73910371-73916335:-|nuORF;nc|ENSG00000188878|Q8TES7-2|FBF1;nc|ENSG00000188878|Q8TES7|FBF1;nc|ENSG00000188878|Q8TES7-5|FBF1;ENSG00000188878|ENST00000636174|FBF1	ENST00000585990.5_1_17:73910371-73916335:-|nuORF	ENST00000585990.5_1_17:73910371-73916335:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	591.1796875	2	590.779353	1179.54415	-0.3769	-0.00022267	1.1525	0.00068088	0.77561	0.00045822	590.7799258487842	33.188	0.50774	33.188	33.04	33.547	0					14	9	2	0	0	0	0.88813	1	10840	10840		14.405	0	1	2582200			60634	8943	44226	44574	59063	59063					-0.03843751058775524
VTAEQSKAESM	11	Unmodified	_VTAEQSKAESM_					0	0	0		ENST00000585990.5_1_17:73910371-73916335:-|nuORF;nc|ENSG00000188878|Q8TES7-2|FBF1;nc|ENSG00000188878|Q8TES7|FBF1;nc|ENSG00000188878|Q8TES7-5|FBF1;ENSG00000188878|ENST00000636174|FBF1	ENST00000585990.5_1_17:73910371-73916335:-|nuORF	ENST00000585990.5_1_17:73910371-73916335:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	591.1791381835938	2	590.779353	1179.54415	-0.74728	-0.00044148	0.50431	0.00029794	-0.24297	-0.00014354	590.7795792601345	54.637	0.81465	55.388	55.118	55.933	0.75075					35	15	3	0	0	0	0.80621	1	20608	20608		31.268	7.2478	1	7695800			60635	8943	44226	44574	59064	59064					-0.03843751058775524
VTAEVIQLLK	10	Unmodified	_VTAEVIQLLK_					0	0	0			REV__ENST00000487519.5_1_10:60155135-60155255:+|nuORF	REV__ENST00000487519.5_1_10:60155135-60155255:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	372.30072021484375	3	371.90078	1112.68051	0.27532	0.00010239	1.1913	0.00044303	1.4666	0.00054542	371.90077501341676	64.686	0.8632	64.686	64.292	65.156	0					28	16	3	0	0	0	0.91909	1	23396	23396		3.0723	0	1	3257300	+		60636	25335	44227	44575	59065	59065					0.12867731234041457
VTAGALCCYS	10	Unmodified	_VTAGALCCYS_					0	0	0		ENST00000489684.2_1_3:49044864-49050780:+|nuORF;ENST00000420783.7_1_3:49050474-49050594:+|nuORF	ENST00000489684.2_1_3:49044864-49050780:+|nuORF	ENST00000489684.2_1_3:49044864-49050780:+|nuORF	MSMS	A375_MHC_IP_R1	1	494.1710205078125	2	494.217346	986.420138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.59	1	103.59	103.09	104.09	0								0	0	0	0.14983	1	38044	38044		18.146	0.011366	1				60637	12639	44228	44576	59066	59066					-0.07361500359957063
VTAIAEVI	8	Unmodified	_VTAIAEVI_					0	0	0			REV__PXDN|p.D1187Efs*3|1|0.08|ENSG00000130508|chr2:1648215-1648219|TCAGG/-|frameshift_variant	REV__PXDN|p.D1187Efs*3|1|0.08|ENSG00000130508|chr2:1648215-1648219|TCAGG/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	408.2798767089844	2	408.247286	814.48002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.239	1	57.988	57.488	58.488	0.74909								0	0	0	0.16876	1	21642	21642		13.508	0	1		+		60638	18543	44229	44577	59067	59067					0.06535881637239527
VTAISPGR	8	Unmodified	_VTAISPGR_					0	0	0		ANKRD9|p.P296L|1|0.22|ENSG00000156381|chr14:102507003-102507003|G/A|missense_variant;ENSG00000156381|ENST00000286918|ANKRD9	ANKRD9|p.P296L|1|0.22|ENSG00000156381|chr14:102507003-102507003|G/A|missense_variant	ANKRD9|p.P296L|1|0.22|ENSG00000156381|chr14:102507003-102507003|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	401.13482666015625	2	400.734877	799.455202	-0.40896	-0.00016388	0.29922	0.00011991	-0.10974	-4.3975E-05	400.73489511837124	38.431	0.55796	39.205	38.895	39.453	0.77451					17	10	2	0	0	0	0.73111	1	14111	14111		25.399	1.3787	1	5446000			60639	147	44230	44578	59068	59068					0.04745246554523419
VTAKAKPP	8	Unmodified	_VTAKAKPP_					0	0	0			REV__nc|ENSG00000130518|Q9H0B3-5|IQCN	REV__nc|ENSG00000130518|Q9H0B3-5|IQCN	MSMS	A375_MHC_IP_R1	1	406.303955078125	2	406.255446	810.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.243	1	36.243	35.743	36.743	0								0	0	0	0.16876	1	12117	12117		8.5933	0	1		+		60640	18546	44231	44579	59069	59069					0.08351007593989834
VTAKQPPEI	9	Unmodified	_VTAKQPPEI_					0	0	0		ENSG00000147649|ENST00000336273|MTDH	ENSG00000147649|ENST00000336273|MTDH	ENSG00000147649|ENST00000336273|MTDH	MULTI-SECPEP	A375_MHC_IP_R2	2	492.4775695800781	2	491.782025	981.549496	-0.36097	-0.00017752	-0.67238	-0.00033067	-1.0333	-0.00050818	491.7815697238419	44.105	0.50542	44.875	44.53	45.035	0.7691					13	9	2	0	0	0	0.50702	1	16409	16409		19.257	0	1	2240200			60641	5697	44232	44580	59070	59070					0.05798340585999995
VTALAARTW	9	Unmodified	_VTALAARTW_					0	0	0		nc|ENSG00000130770|Q9UII2-2|ATP5IF1;nc|ENSG00000130770|Q9UII2-3|ATP5IF1;ENSG00000130770|ENST00000335514|ATP5IF1	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	MULTI-MSMS	A375_MHC_IP_R1	1	495.1819763183594	2	494.782359	987.550165	-0.54443	-0.00026938	-0.10514	-5.202E-05	-0.64957	-0.0003214	494.7822562201189	53.028	0.70933	53.028	52.744	53.453	0					33	13	4	0	0	0	0.0090873	1	18849	18849		100.71	27.741	1	8688800			60642	14601	44233	44581	59071	59071					0.05589180025708629
VTALAARTW	9	Unmodified	_VTALAARTW_					0	0	0		nc|ENSG00000130770|Q9UII2-2|ATP5IF1;nc|ENSG00000130770|Q9UII2-3|ATP5IF1;ENSG00000130770|ENST00000335514|ATP5IF1	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	MULTI-SECPEP	A375_MHC_IP_R2	2	495.1816711425781	2	494.782359	987.550165	-0.85476	-0.00042292	-0.30619	-0.0001515	-1.1609	-0.00057442	494.7822050950179	52.155	0.75973	52.907	52.677	53.437	0.75225					31	14	3	0	0	0	0.013536	1	19638	19638		121.35	38.817	1	8969400			60643	14601	44233	44581	59072	59072					0.05589180025708629
VTALDWSVPS	10	Unmodified	_VTALDWSVPS_					0	0	0			REV__SLAMF8|p.N205S|1|0.3|ENSG00000158714|chr1:159833122-159833122|A/G|missense_variant	REV__SLAMF8|p.N205S|1|0.3|ENSG00000158714|chr1:159833122-159833122|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	537.686279296875	2	537.776939	1073.53933	-0.79727	-0.00042875	-0.18721	-0.00010068	-0.98448	-0.00052943	537.7770771003374	63.975	0.3542	64.715	64.496	64.85	0.74022					11	6	2	0	0	0	0.61429	1	24200	24200		37.974	27.9	1	933460	+		60644	27971	44234	44582	59073	59073					0.005497328607589225
VTAMGRSPNI	10	Unmodified	_VTAMGRSPNI_					0	0	0		ERC2|p.S100R|1|0.36|ENSG00000187672|chr3:56434708-56434708|A/T|missense_variant	ERC2|p.S100R|1|0.36|ENSG00000187672|chr3:56434708-56434708|A/T|missense_variant	ERC2|p.S100R|1|0.36|ENSG00000187672|chr3:56434708-56434708|A/T|missense_variant	MSMS	A375_MHC_IP_R2	2	523.2362060546875	2	523.276583	1044.53861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.224	1	43.996	43.496	44.496	0.7724								0	0	0	0.15308	1	16099	16099		10.824	0.75	1				60645	13955	44235	44583	59074	59074					0.018126149400586655
VTAQILLKALN	11	Unmodified	_VTAQILLKALN_					0	0	0		ENST00000514461.1_1_4:116964948-116965134:-|nuORF	ENST00000514461.1_1_4:116964948-116965134:-|nuORF	ENST00000514461.1_1_4:116964948-116965134:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	592.7745361328125	2	592.374081	1182.73361	-0.37549	-0.00022243	0.19738	0.00011692	-0.17811	-0.00010551	592.3740721974787	149.5	2.4303	149.52	147.58	150.01	0.01825					329	101	5	0	0	0	0.73934	1	57481	57481		0	0	1	4213000			60646	12939	44236	44584	59075	59075					0.14955109016727874
VTAQPPSITPI	11	Unmodified	_VTAQPPSITPI_					0	0	0			REV__ENSG00000268629|ENST00000600991|TEX13A	REV__ENSG00000268629|ENST00000600991|TEX13A	MULTI-SECPEP	A375_MHC_IP_R1	1	562.7769165039062	2	562.321514	1122.62847	-0.35257	-0.00019826	1.3187	0.00074155	0.96615	0.00054329	562.322216491889	93.407	0.91727	93.407	93.074	93.991	0					28	17	2	0	0	0	0.70509	1	34347	34347		45.74	3.7843	1	2383100	+		60647	22933	44237	44585	59076	59076					0.07206567820298915
VTAQPPSITPI	11	Unmodified	_VTAQPPSITPI_					0	0	0			REV__ENSG00000268629|ENST00000600991|TEX13A	REV__ENSG00000268629|ENST00000600991|TEX13A	MULTI-SECPEP	A375_MHC_IP_R2	2	562.7223510742188	2	562.321514	1122.62847	-0.49069	-0.00027593	1.2786	0.00071897	0.78788	0.00044304	562.3220794438638	92.441	0.76036	93.18	92.836	93.596	0.73902					25	14	2	0	0	0	0.78491	1	35155	35155		45.74	3.7843	1	2936000	+		60648	22933	44237	44585	59077	59077					0.07206567820298915
VTARCGRLDL	10	Unmodified	_VTARCGRLDL_					0	0	0			REV__ENST00000249364.8_1_7:128394402-128394444:+|nuORF	REV__ENST00000249364.8_1_7:128394402-128394444:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	552.64453125	2	552.303133	1102.59171	-0.99092	-0.00054729	-3.5386	-0.0019544	-4.5295	-0.0025016	552.2988467841684	40.866	0.30496	41.641	41.438	41.743	0.77451					6	5	2	0	0	0	0.91909	1	15086	15086		5.7319	1.7875	1	565190	+		60649	23121	44238	44586	59078	59078					0.04451992722738396
VTARLVGVLW	10	Unmodified	_VTARLVGVLW_					0	0	0		ENSG00000162604|ENST00000606498|TM2D1	ENSG00000162604|ENST00000606498|TM2D1	ENSG00000162604|ENST00000606498|TM2D1	MULTI-SECPEP	A375_MHC_IP_R1	1	557.74267578125	2	557.342584	1112.67061	-0.45462	-0.00025338	0.39183	0.00021838	-0.062793	-3.4997E-05	557.3427605210732	105.07	0.60928	105.07	104.79	105.4	0					26	11	3	0	0	0	0.67187	1	38554	38554		46.022	32.98	1	4719000			60650	6558	44239	44587	59079	59079					0.11878588019317249
VTASERIFV	9	Unmodified	_VTASERIFV_					0	0	0		ENSG00000128829|ENST00000263791|EIF2AK4;nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	ENSG00000128829|ENST00000263791|EIF2AK4	ENSG00000128829|ENST00000263791|EIF2AK4	MULTI-SECPEP	A375_MHC_IP_R1	1	511.6866455078125	2	511.287474	1020.5604	-0.85546	-0.00043739	0.057261	2.9277E-05	-0.7982	-0.00040811	511.28743169476553	67.929	0.55582	67.929	67.603	68.159	0					18	10	2	0	0	0	0.53748	1	24589	24589		30.637	6.616	1	4464000			60651	4165	44240	44588	59080	59080					0.050937429602981865
VTASERIFV	9	Unmodified	_VTASERIFV_					0	0	0		ENSG00000128829|ENST00000263791|EIF2AK4;nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	ENSG00000128829|ENST00000263791|EIF2AK4	ENSG00000128829|ENST00000263791|EIF2AK4	MULTI-SECPEP	A375_MHC_IP_R2	2	511.13507080078125	2	511.287474	1020.5604	-0.82272	-0.00042064	0.45976	0.00023507	-0.36296	-0.00018558	511.28744370879633	66.886	0.81266	67.623	67.138	67.951	0.73631					28	15	3	0	0	0	0.4261	1	25304	25304		30.637	5.2372	1	5512200			60652	4165	44240	44588	59081	59081					0.050937429602981865
VTASYTKILIT	11	Unmodified	_VTASYTKILIT_					0	0	0		OR2T6|p.R220K|1|0.12|ENSG00000198104|chr1:248388267-248388267|G/A|missense_variant	OR2T6|p.R220K|1|0.12|ENSG00000198104|chr1:248388267-248388267|G/A|missense_variant	OR2T6|p.R220K|1|0.12|ENSG00000198104|chr1:248388267-248388267|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	605.283447265625	2	605.358096	1208.70164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.253	1	88.984	88.484	89.484	0.7318								0	0	0	0.16249	1	33583	33583		5.7319	0	1				60653	15073	44241	44589	59082	59082					0.10563696542908474
VTATLGSSSGP	11	Unmodified	_VTATLGSSSGP_					0	0	0			REV__ENSG00000180357|ENST00000326648|ZNF609	REV__ENSG00000180357|ENST00000326648|ZNF609	MULTI-SECPEP	A375_MHC_IP_R1	1	489.1502990722656	2	488.750921	975.48729	-0.22729	-0.00011109	-0.76109	-0.00037198	-0.98838	-0.00048307	488.7504817896982	102.18	1.0113	102.18	101.75	102.76	0					39	19	3	0	0	0	0.92455	1	37493	37493		16.149	3.1066	1	10846000	+		60654	21609	44242	44590	59083	59083					-0.0014343055297558749
VTATLGSSSGP	11	Unmodified	_VTATLGSSSGP_					0	0	0			REV__ENSG00000180357|ENST00000326648|ZNF609	REV__ENSG00000180357|ENST00000326648|ZNF609	MULTI-MATCH	A375_MHC_IP_R2	2		2	488.750921	975.48729	-0.45832	-0.000224	-0.24585	-0.00012016	-0.70417	-0.00034417	488.7506866879295	101.24	0.91817	102.01	101.65	102.57	0.76428	-0.088516	0.00027226	NaN	16.149	44	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10389000	+		60655	21609	44242	44590							-0.0014343055297558749
VTAVSITK	8	Unmodified	_VTAVSITK_					0	0	0			REV__nc|ENSG00000157193|Q14114-4|LRP8	REV__nc|ENSG00000157193|Q14114-4|LRP8	MULTI-SECPEP	A375_MHC_IP_R2	2	410.152587890625	2	409.752736	817.490919	-0.44715	-0.00018322	0.31603	0.00012949	-0.13112	-5.3729E-05	409.75276997258305	33.976	0.30309	34.728	34.5	34.803	0.75225					10	5	2	0	0	0	0.90057	1	12233	12233		29.082	1.4528	1	3392200	+		60656	20017	44243	44591	59084	59084					0.07487284011517659
VTCEMEVDEC	10	Unmodified	_VTCEMEVDEC_					0	0	0		nc|ENSG00000148204|Q5IJ48-2|CRB2;ENSG00000148204|ENST00000373631|CRB2	nc|ENSG00000148204|Q5IJ48-2|CRB2	nc|ENSG00000148204|Q5IJ48-2|CRB2	MULTI-MSMS	A375_MHC_IP_R2	2	580.1746215820312	2	579.2116	1156.40865	-0.4836	-0.0002801	-0.036405	-2.1086E-05	-0.52	-0.00030119	579.2116307019996	36.379	0.66218	37.15	36.799	37.461	0.7709					36	12	4	0	0	0	0.71245	1	13334	13334		6.7232	2.7788	1	7427200			60657	5724	44244	44592	59085	59085					-0.16330110236253859
VTCFPHPY	8	Unmodified	_VTCFPHPY_					0	0	0		ENSG00000175325|ENST00000308304|PROP1	ENSG00000175325|ENST00000308304|PROP1	ENSG00000175325|ENST00000308304|PROP1	MULTI-MSMS	A375_MHC_IP_R1	1	482.6234436035156	2	482.223288	962.432024	-0.4245	-0.00020471	-0.37216	-0.00017946	-0.79666	-0.00038417	482.2231547586179	58.544	0.55843	58.544	58.228	58.786	0					16	10	2	0	0	0	0.77123	1	21014	21014		14.582	1.0738	1	1985100			60658	7951	44245	44593	59086	59086					-0.050695155544644876
VTCKEPEDVC	10	Unmodified	_VTCKEPEDVC_					0	0	0			REV__nc|ENSG00000140479|P29122-2|PCSK6	REV__nc|ENSG00000140479|P29122-2|PCSK6	MULTI-SECPEP	A375_MHC_IP_R1	1	562.1389770507812	2	561.743924	1121.4733	-0.52904	-0.00029718	-2.4251	-0.0013623	-2.9542	-0.0016595	561.7416648094768	64.969	0.96622	64.969	64.343	65.309	0					32	18	3	0	0	0	0.64716	1	23348	23348		29.082	0	1	4202700	+		60659	19217	44246	44594	59087	59087					-0.08258167367966962
VTCLALDT	8	Unmodified	_VTCLALDT_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2;ENST00000469349.1_1_3:47049277-47049433:+|nuORF;ENST00000461036.1_1_3:47048952-47049433:+|nuORF	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-SECPEP	A375_MHC_IP_R2	2	417.6094665527344	2	418.215129	834.415705	-0.3057	-0.00012785	-0.32207	-0.0001347	-0.62778	-0.00026255	418.21426389176963	35.354	0.20255	36.117	35.98	36.183	0.76338					7	3	3	0	0	0	0.972	1	12794	12794		12.532	4.6214	1	528250			60660	6444	44247	44595	59088	59088					-0.008126415112201357
VTCLHNYF	8	Unmodified	_VTCLHNYF_					0	0	0		ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	MSMS	A375_MHC_IP_R1	1	498.6794128417969	2	498.73402	995.453487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.6	1	60.6	60.1	61.1	0								0	0	0	0.16876	1	21820	21820		12.532	0.89125	1				60661	7747	44248	44596	59089	59089					-0.04442130525751509
VTCQWQTF	8	Unmodified	_VTCQWQTF_					0	0	0			REV__ENST00000372134.5_1_10:85909951-85910536:+|nuORF	REV__ENST00000372134.5_1_10:85909951-85910536:+|nuORF	MSMS	A375_MHC_IP_R2	2	506.67889404296875	2	506.731477	1011.4484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.455	1	87.188	86.688	87.688	0.733								0	0	0	0.16876	1	32878	32878		14.582	2.9414	1		+		60662	24058	44249	44597	59090	59090					-0.0568643438836034
VTCRIRLRRR	10	Unmodified	_VTCRIRLRRR_					0	0	0		ENST00000488719.1_1_22:30975561-30975981:-|nuORF	ENST00000488719.1_1_22:30975561-30975981:-|nuORF	ENST00000488719.1_1_22:30975561-30975981:-|nuORF	MSMS	A375_MHC_IP_R2	2	664.9661254882812	2	664.912039	1327.80952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.684	1	78.427	77.927	78.927	0.74293								0	0	0	0.15557	1	29499	29499		2.7352	1.2533	1				60663	12621	44250	44598	59091	59091					0.15873227435827175
VTCSAQTVQV	10	Unmodified	_VTCSAQTVQV_					0	0	0		ENSG00000198218|ENST00000395443|QRICH1;ENST00000479449.1_1_3:49070551-49094468:-|nuORF	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MSMS	A375_MHC_IP_R2	2	518.22119140625	2	518.260599	1034.50665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.316	1	39.09	38.59	39.59	0.77451								0	0	0	0.15158	1	14089	14089		14.838	0.93222	1				60664	9244	44251	44599	59092	59092					-0.009227975337580574
VTCWVWRSMRK	11	Unmodified	_VTCWVWRSMRK_					0	0	0		ENSG00000144229|ENST00000409968|THSD7B	ENSG00000144229|ENST00000409968|THSD7B	ENSG00000144229|ENST00000409968|THSD7B	MSMS	A375_MHC_IP_R1	1	726.3721923828125	2	726.373566	1450.73258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.21	1	129.21	128.71	129.71	0								0	0	0	0.16213	1	49677	49677		7.609	4.6137	1				60665	5473	44252	44600	59093	59093					0.025242481044642773
VTDAKRSIVSP	11	Unmodified	_VTDAKRSIVSP_					0	0	0		GTF2IRD2|p.E200K|1|0.47|ENSG00000196275|chr7:74819997-74819997|C/T|missense_variant	GTF2IRD2|p.E200K|1|0.47|ENSG00000196275|chr7:74819997-74819997|C/T|missense_variant	GTF2IRD2|p.E200K|1|0.47|ENSG00000196275|chr7:74819997-74819997|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	391.2911682128906	3	391.559305	1171.65609	0.1133	4.4365E-05	1.3611	0.00053297	1.4744	0.00057733	391.5598965489636	34.138	0.3019	34.138	34.001	34.303	0					7	5	2	0	0	0	0.96045	1	11249	11249		10.016	5.6101	1	1817000			60666	14095	44253	44601	59094	59094					0.07712471080526484
VTDAQGNAEY	10	Unmodified	_VTDAQGNAEY_					0	0	0			REV__ENSG00000004487|ENST00000400181|KDM1A	REV__ENSG00000004487|ENST00000400181|KDM1A	MULTI-MSMS	A375_MHC_IP_R1	1	534.6652221679688	2	534.235635	1066.45672	-1.0243	-0.0005472	1.0836	0.00057889	0.059328	3.1695E-05	534.2363650325027	67.613	0.96484	67.613	67.194	68.159	0					39	18	3	0	0	0	0.71466	1	24388	24388		5.7319	0.83484	1	15745000	+		60667	16097	44254	44602	59095	59095					-0.07385208938035248
VTDAVALRV	9	Unmodified	_VTDAVALRV_					0	0	0		ENST00000442885.2_1_11:65655295-65655958:-|nuORF;ENST00000528937.1_1_11:65654989-65655958:-|nuORF;ENST00000532679.5_1_11:65653270-65655931:-|nuORF;ENSG00000172500|ENST00000357519|FIBP;nc|ENSG00000172500|O43427|FIBP	ENST00000442885.2_1_11:65655295-65655958:-|nuORF	ENST00000442885.2_1_11:65655295-65655958:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	472.6818542480469	2	472.282192	942.549831	-0.33643	-0.00015889	0.24597	0.00011617	-0.090466	-4.2726E-05	472.28225489896073	54.541	1.2143	54.541	53.962	55.177	0					66	23	4	0	0	0	0.066859	1	19319	19319		57.722	15.627	1	77797000			60668	7716	44255	44603	59096	59096					0.0762576030585933
VTDAVALRV	9	Unmodified	_VTDAVALRV_					0	0	0		ENST00000442885.2_1_11:65655295-65655958:-|nuORF;ENST00000528937.1_1_11:65654989-65655958:-|nuORF;ENST00000532679.5_1_11:65653270-65655931:-|nuORF;ENSG00000172500|ENST00000357519|FIBP;nc|ENSG00000172500|O43427|FIBP	ENST00000442885.2_1_11:65655295-65655958:-|nuORF	ENST00000442885.2_1_11:65655295-65655958:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	472.6819152832031	2	472.282192	942.549831	-1.0705	-0.0005056	0.2567	0.00012124	-0.81384	-0.00038436	472.2822735585846	53.678	1.2766	54.429	53.842	55.118	0.75105					70	24	4	0	0	0	0.04447	1	20102	20102		66.457	20.757	1	73374000			60669	7716	44255	44603	59097	59097					0.0762576030585933
VTDCMGREI	9	Carbamidomethyl (C),Oxidation (M)	_VTDC(Carbamidomethyl (C))M(Oxidation (M))GREI_	VTDC(1)MGREI	VTDCM(1)GREI	VTDC(44)MGREI	VTDCM(44)GREI	0	1	1		ENSG00000114698|ENST00000354952|PLSCR4	ENSG00000114698|ENST00000354952|PLSCR4	ENSG00000114698|ENST00000354952|PLSCR4	MULTI-MSMS	A375_MHC_IP_R2	2	549.1384887695312	2	548.741716	1095.46888	-0.81473	-0.00044708	-3.2594	-0.0017886	-4.0741	-0.0022356	548.739764666275	127.55	0.25436	127.81	127.66	127.92	0.26592					7	4	2	0	0	0	0.13797	1	50039	50039		43.858	7.8141	1	7582600			60670	3238	44256	44604	59098	59098	23	153			-0.07503631790837062
VTDDSPKYNY	10	Unmodified	_VTDDSPKYNY_					0	0	0		nc|ENSG00000090861|P49588-2|AARS1;ENSG00000090861|ENST00000261772|AARS1	nc|ENSG00000090861|P49588-2|AARS1	nc|ENSG00000090861|P49588-2|AARS1	MULTI-MSMS	A375_MHC_IP_R1	1	601.7243041992188	2	601.272218	1200.52988	-0.28931	-0.00017395	0.027784	1.6706E-05	-0.26152	-0.00015725	601.2721709379141	28.573	0.70859	28.573	28.339	29.047	0					36	13	4	0	0	0	4.0434E-07	1	8797	8797		203.64	149.81	1	37763000			60671	14498	44257	44605	59099	59099					-0.0623608021542168
VTDDSPKYNY	10	Unmodified	_VTDDSPKYNY_					0	0	0		nc|ENSG00000090861|P49588-2|AARS1;ENSG00000090861|ENST00000261772|AARS1	nc|ENSG00000090861|P49588-2|AARS1	nc|ENSG00000090861|P49588-2|AARS1	MULTI-SECPEP	A375_MHC_IP_R2	2	601.6719970703125	2	601.272218	1200.52988	-0.63367	-0.00038101	0.037942	2.2813E-05	-0.59573	-0.00035819	601.2721851296487	28.047	0.60849	28.725	28.452	29.06	0.67857					34	11	4	0	0	0	6.306E-05	1	9619	9619		250.47	194.29	1	45569000			60672	14498	44257	44605	59100	59100					-0.0623608021542168
VTDEEWIHD	9	Unmodified	_VTDEEWIHD_					0	0	0			REV__nc|ENSG00000187258|Q6W5P4-6|NPSR1	REV__nc|ENSG00000187258|Q6W5P4-6|NPSR1	MSMS	A375_MHC_IP_R1	1	572.1636352539062	2	572.251286	1142.48802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.292	1	29.292	28.792	29.792	0								0	0	0	0.12568	1	9142	9142		34.102	10.082	1		+		60673	27427	44258	44606	59101	59101					-0.07752635903943883
VTDEPPPGL	9	Unmodified	_VTDEPPPGL_					0	0	0		nc|ENSG00000182158|Q70SY1-2|CREB3L2;ENSG00000182158|ENST00000330387|CREB3L2;nc|ENSG00000182158|Q70SY1-3|CREB3L2;CREB3L2|p.P140L|1|0.33|ENSG00000182158|chr7:137915913-137915913|G/A|missense_variant	nc|ENSG00000182158|Q70SY1-2|CREB3L2	nc|ENSG00000182158|Q70SY1-2|CREB3L2	MULTI-SECPEP	A375_MHC_IP_R2	2	462.15325927734375	2	462.737283	923.460012	-0.6189	-0.00028639	0.2475	0.00011453	-0.3714	-0.00017186	462.7373273826714	55.574	0.71133	56.325	56.034	56.745	0.75075					17	13	2	0	0	0	0.43707	1	21015	21015		15.847	4.2069	1	1254100			60674	8380	44259	44607	59102	59102					-0.0047791409338060475
VTDEPPPGL	9	Unmodified	_VTDEPPPGL_					0	0	0		nc|ENSG00000182158|Q70SY1-2|CREB3L2;ENSG00000182158|ENST00000330387|CREB3L2;nc|ENSG00000182158|Q70SY1-3|CREB3L2;CREB3L2|p.P140L|1|0.33|ENSG00000182158|chr7:137915913-137915913|G/A|missense_variant	nc|ENSG00000182158|Q70SY1-2|CREB3L2	nc|ENSG00000182158|Q70SY1-2|CREB3L2	MULTI-SECPEP	A375_MHC_IP_R2	2	924.8671875	1	924.467289	923.460012	-0.39581	-0.00036591	-0.15319	-0.00014162	-0.549	-0.00050753	924.4671841923004	55.612	0.81307	56.362	55.984	56.797	0.75075					28	15	2	0	0	0	0.28475	1	21147	21147		48.346	25.197	1	4060400			60675	8380	44259	44607	59103	59103					-0.0047791409338060475
VTDEPPPGL	9	Unmodified	_VTDEPPPGL_					0	0	0		nc|ENSG00000182158|Q70SY1-2|CREB3L2;ENSG00000182158|ENST00000330387|CREB3L2;nc|ENSG00000182158|Q70SY1-3|CREB3L2;CREB3L2|p.P140L|1|0.33|ENSG00000182158|chr7:137915913-137915913|G/A|missense_variant	nc|ENSG00000182158|Q70SY1-2|CREB3L2	nc|ENSG00000182158|Q70SY1-2|CREB3L2	MULTI-MATCH	A375_MHC_IP_R1	1		1	924.467289	923.460012	0.046964	4.3417E-05	-0.17948	-0.00016592	-0.13251	-0.0001225	924.467132956673	56.321	0.76024	56.321	55.941	56.701	0	-0.020592	-1.3033E-05	NaN	48.346	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3445200			60676	8380	44259	44607							-0.0047791409338060475
VTDERFVQK	9	Unmodified	_VTDERFVQK_					0	0	0		nc|ENSG00000175175|Q8WY54-3|PPM1E;ENSG00000175175|ENST00000308249|PPM1E	nc|ENSG00000175175|Q8WY54-3|PPM1E	nc|ENSG00000175175|Q8WY54-3|PPM1E	MULTI-MSMS	A375_MHC_IP_R2	2	374.6166076660156	3	374.536501	1120.58767	0.14629	5.4789E-05	-0.29756	-0.00011145	-0.15128	-5.6659E-05	374.536327493368	34.72	0.65879	35.484	35.119	35.778	0.76338					16	12	2	0	0	0	0.69317	1	12542	12542		7.609	0.57187	1	2731100			60677	7938	44260	44608	59104	59104					0.032202265006844755
VTDGAILGKLY	11	Unmodified	_VTDGAILGKLY_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.E4343Kfs*13|1|0.36|ENSG00000055609|chr7:152148900-152148900|C/-|frameshift_variant;KMT2C|p.Q2128Rfs*25|1|0.04|ENSG00000055609|chr7:152181476-152181477|CT/-|frameshift_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-SECPEP	A375_MHC_IP_R1	1	575.1644287109375	2	575.329339	1148.64412	-0.2092	-0.00012036	-0.17405	-0.00010013	-0.38324	-0.00022049	575.3292139985878	81.397	0.81026	81.397	81.049	81.86	0					39	15	4	0	0	0	0.0031683	1	29724	29724		187.14	131.91	1	21322000			60678	1271	44261	44609	59105	59105					0.0757485433734928
VTDGAILGKLY	11	Unmodified	_VTDGAILGKLY_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.E4343Kfs*13|1|0.36|ENSG00000055609|chr7:152148900-152148900|C/-|frameshift_variant;KMT2C|p.Q2128Rfs*25|1|0.04|ENSG00000055609|chr7:152181476-152181477|CT/-|frameshift_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-SECPEP	A375_MHC_IP_R2	2	575.710205078125	2	575.329339	1148.64412	-0.23573	-0.00013562	-0.059201	-3.406E-05	-0.29493	-0.00016968	575.3292019627253	80.586	0.9174	81.33	80.91	81.828	0.74473					40	17	4	0	0	0	0.0010504	1	30594	30594		214.05	147.59	1	19792000			60679	1271	44261	44609	59106	59106					0.0757485433734928
VTDGGSSDP	9	Unmodified	_VTDGGSSDP_					0	0	0		ENSG00000179403|ENST00000476993|VWA1	ENSG00000179403|ENST00000476993|VWA1	ENSG00000179403|ENST00000476993|VWA1	MULTI-SECPEP	A375_MHC_IP_R1	1	834.3363037109375	1	834.347568	833.340291	-0.63297	-0.00052811	-2.3858	-0.0019906	-3.0188	-0.0025187	834.3465159384881	124.69	0.3046	124.69	124.44	124.75	0					7	5	2	0	0	0	0.75466	1	46962	46962		0.45834	0	1	10237000			60680	8229	44262	44610	59107	59107					-0.08304527437940123
VTDGKVDYFL	10	Unmodified	_VTDGKVDYFL_					0	0	0		ENST00000475243.5_1_20:57021752-57021950:+|nuORF	ENST00000475243.5_1_20:57021752-57021950:+|nuORF	ENST00000475243.5_1_20:57021752-57021950:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	580.1862182617188	2	578.797872	1155.58119	-0.17633	-0.00010206	0.63044	0.0003649	0.45412	0.00026284	578.7982591940619	63.418	1.3706	64.158	63.531	64.902	0.74022					60	26	3	0	0	0	0.70329	1	24106	24106		10.824	0	1	5345000			60681	12417	44263	44611	59108	59108					0.009622885492717614
VTDGPGNYKY	10	Unmodified	_VTDGPGNYKY_					0	0	0		nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN;ATRN|p.Y225Vfs*8|1|0.34|ENSG00000088812|chr20:3545825-3545826|-/G|frameshift_variant	nc|ENSG00000088812|O75882-3|ATRN	nc|ENSG00000088812|O75882-3|ATRN	MULTI-SECPEP	A375_MHC_IP_R1	1	557.663818359375	2	557.264196	1112.51384	-0.94111	-0.00052445	0.47114	0.00026255	-0.46998	-0.0002619	557.2645367725713	29.123	0.70842	29.123	28.745	29.453	0					48	13	5	0	0	0	0.036089	1	9028	9028		155.95	94.596	1	285620000			60682	1897	44264	44612	59109	59109					-0.03791741661666492
VTDGPGNYKY	10	Unmodified	_VTDGPGNYKY_					0	0	0		nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN;ATRN|p.Y225Vfs*8|1|0.34|ENSG00000088812|chr20:3545825-3545826|-/G|frameshift_variant	nc|ENSG00000088812|O75882-3|ATRN	nc|ENSG00000088812|O75882-3|ATRN	MULTI-SECPEP	A375_MHC_IP_R2	2	557.6636962890625	2	557.264196	1112.51384	-1.2938	-0.00072096	0.17369	9.6793E-05	-1.1201	-0.00062417	557.264282414941	28.56	0.70562	29.259	28.878	29.584	0.69872					46	13	5	0	0	0	0.015081	1	9805	9805		143.91	85.23	1	591660000			60683	1897	44264	44612	59110	59110					-0.03791741661666492
VTDGTHTDFY	10	Unmodified	_VTDGTHTDFY_					0	0	0		ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000183090|ENST00000329798|FREM3	ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	MULTI-MSMS	A375_MHC_IP_R2	2	578.7161865234375	2	578.251286	1154.48802	-0.21181	-0.00012248	-0.79437	-0.00045935	-1.0062	-0.00058183	578.2507950567739	76.938	0.65813	77.681	77.404	78.062	0.74293					36	12	4	0	0	0	0.6806	1	29216	29216		14.838	0	1	10574000			60684	5867	44265	44613	59111	59111					-0.08304635903959934
VTDHDIPQQL	10	Unmodified	_VTDHDIPQQL_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	388.6236572265625	3	389.199777	1164.5775	0.003748	1.4587E-06	0.67577	0.00026301	0.67952	0.00026447	389.2000752044359	19.327	0.3335	19.327	19.238	19.571	0					6	5	2	0	0	0	0.91909	1	4663	4663		8.4443	2.2525	1	2756300			60685	8836	44266	44614	59112	59112					0.001796187754280254
VTDHLGVVY	9	Unmodified	_VTDHLGVVY_					0	0	0		ENST00000473051.1_1_10:74095570-74096546:-|nuORF;ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12	ENST00000473051.1_1_10:74095570-74096546:-|nuORF	ENST00000473051.1_1_10:74095570-74096546:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	501.6920166015625	2	501.766374	1001.5182	-0.39666	-0.00019903	-0.33537	-0.00016828	-0.73203	-0.00036731	501.7662423319088	55.133	0.45718	55.133	54.873	55.33	0					15	8	2	0	0	0	0.12592	1	19699	19699		46.021	19.137	1	4461800			60686	5760	44267	44615	59113	59113					0.01749767551905279
VTDHLGVVY	9	Unmodified	_VTDHLGVVY_					0	0	0		ENST00000473051.1_1_10:74095570-74096546:-|nuORF;ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12	ENST00000473051.1_1_10:74095570-74096546:-|nuORF	ENST00000473051.1_1_10:74095570-74096546:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	502.1661071777344	2	501.766374	1001.5182	-0.86295	-0.000433	-0.27589	-0.00013843	-1.1388	-0.00057143	501.7662869268766	54.284	0.60703	55.035	54.763	55.37	0.75075					17	11	3	0	0	0	0.12592	2	20498	20418;20498		46.021	22	1	3913400			60687	5760	44267	44615	59114;59115	59115					0.01749767551905279
VTDHLGVVYY	10	Unmodified	_VTDHLGVVYY_					0	0	0		ENST00000473051.1_1_10:74095570-74096546:-|nuORF;ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12	ENST00000473051.1_1_10:74095570-74096546:-|nuORF	ENST00000473051.1_1_10:74095570-74096546:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	583.6981201171875	2	583.298039	1164.58152	0.14255	8.3151E-05	0.086492	5.0451E-05	0.22904	0.0001336	583.2978922188013	69.869	0.96242	69.869	69.326	70.289	0					45	18	4	0	0	0	0.028981	2	25319	25319;25345		81.89	55.622	1	16719000			60688	5760	44268	44616	59116;59117	59116					0.005817082691464748
VTDHLGVVYY	10	Unmodified	_VTDHLGVVYY_					0	0	0		ENST00000473051.1_1_10:74095570-74096546:-|nuORF;ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12	ENST00000473051.1_1_10:74095570-74096546:-|nuORF	ENST00000473051.1_1_10:74095570-74096546:-|nuORF	MSMS	A375_MHC_IP_R1	1	583.3623657226562	2	583.298039	1164.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.413	1	70.413	69.913	70.913	0								0	0	0	0.14925	1	25566	25566		19.257	5.3509	1				60689	5760	44268	44616	59118	59118					0.005817082691464748
VTDHLGVVYY	10	Unmodified	_VTDHLGVVYY_					0	0	0		ENST00000473051.1_1_10:74095570-74096546:-|nuORF;ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12	ENST00000473051.1_1_10:74095570-74096546:-|nuORF	ENST00000473051.1_1_10:74095570-74096546:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	583.6978149414062	2	583.298039	1164.58152	-0.31568	-0.00018413	-0.36569	-0.00021331	-0.68137	-0.00039744	583.2976555215122	69.121	0.86182	69.856	69.373	70.234	0.73511					34	16	3	0	0	0	0.028981	2	26137	26137;26202		81.89	49.105	1	13456000			60690	5760	44268	44616	59119;59120	59119					0.005817082691464748
VTDHYTNLL	9	Unmodified	_VTDHYTNLL_					0	0	0		ENST00000511105.1_1_4:87684292-87687745:+|nuORF	ENST00000511105.1_1_4:87684292-87687745:+|nuORF	ENST00000511105.1_1_4:87684292-87687745:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	538.6741943359375	2	538.274564	1074.53457	-0.75572	-0.00040679	-0.20973	-0.00011289	-0.96545	-0.00051968	538.2744867413522	46.323	0.56011	47.088	46.855	47.416	0.76518					23	10	3	0	0	0	0.20645	1	17331	17331		56.177	6.244	1	6521600			60691	12904	44269	44617	59121	59121					0.0002884871798869426
VTDIDYRNY	9	Unmodified	_VTDIDYRNY_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.Y6402Ffs*2|1|0.34|ENSG00000183091|chr2:151492486-151492487|AT/-|frameshift_variant;NEB|p.V4554Gfs*42|1|0.12|ENSG00000183091|chr2:151562738-151562739|-/CC|frameshift_variant;NEB|p.L4555Rfs*43|1|0.12|ENSG00000183091|chr2:151562736-151562737|-/CCTGCTCT|frameshift_variant	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	A375_MHC_IP_R1	1	580.1747436523438	2	579.774928	1157.5353	-0.13141	-7.619E-05	-0.1985	-0.00011508	-0.32991	-0.00019127	579.7748076422411	37.223	0.25513	37.223	37.045	37.301	0					8	4	2	0	0	0	0.047602	1	12548	12548		65.235	17.486	1	3104800			60692	8464	44270	44618	59122	59122					-0.03716356632935458
VTDIEEIIRFW	11	Unmodified	_VTDIEEIIRFW_					0	0	0		nc|ENSG00000085491|Q6NUK1-2|SLC25A24;ENSG00000085491|ENST00000565488|SLC25A24	nc|ENSG00000085491|Q6NUK1-2|SLC25A24	nc|ENSG00000085491|Q6NUK1-2|SLC25A24	MSMS	A375_MHC_IP_R2	2	710.7103881835938	2	710.877185	1419.73982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.659	1	50.414	49.914	50.914	0.75447								0	0	0	0.16302	1	18662	18662		2.9952	0.26005	1				60693	1814	44271	44619	59123	59123					0.046735824575534934
VTDIHQLSF	9	Unmodified	_VTDIHQLSF_					0	0	0		nc|ENSG00000162600|Q96E52-2|OMA1;ENSG00000162600|ENST00000371226|OMA1	nc|ENSG00000162600|Q96E52-2|OMA1	nc|ENSG00000162600|Q96E52-2|OMA1	MULTI-MSMS	A375_MHC_IP_R2	2	530.676513671875	2	530.277106	1058.53966	-0.49791	-0.00026403	-0.073982	-3.9231E-05	-0.57189	-0.00030326	530.2770913912982	68.257	1.6255	68.993	68.154	69.779	0.73511					103	31	5	0	0	0	0.030891	2	25700	25700;25727		74.2	28.5	1	288870000			60694	6556	44272	44620	59124;59125	59124					0.012731525806202626
VTDIKNFGL	9	Unmodified	_VTDIKNFGL_					0	0	0		nc|ENSG00000133107|Q9UBN4-6|TRPC4;ENSG00000133107|ENST00000379705|TRPC4;nc|ENSG00000133107|Q9UBN4-5|TRPC4	nc|ENSG00000133107|Q9UBN4-6|TRPC4	nc|ENSG00000133107|Q9UBN4-6|TRPC4	MSMS	A375_MHC_IP_R2	2	503.70281982421875	2	503.782025	1005.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.23	1	106.99	106.49	107.49	0.75977								0	0	0	0.15142	1	40159	40159		19.257	1.1106	1				60695	4487	44273	44621	59126	59126					0.04694340586001999
VTDIPDLPHSR	11	Unmodified	_VTDIPDLPHSR_					0	0	0			REV__nc|ENSG00000172053|P47897-2|QARS1	REV__nc|ENSG00000172053|P47897-2|QARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	416.6384582519531	3	417.222693	1248.64625	0.064232	2.6799E-05	0.24899	0.00010389	0.31322	0.00013068	417.2227798354934	41.054	0.35195	41.054	40.863	41.215	0					11	6	2	0	0	0	0.99411	1	14196	14196		9.7643	5.8879	1	1550700	+		60696	21118	44274	44622	59127	59127					0.03187283075135383
VTDKEAPQ	8	Unmodified	_VTDKEAPQ_					0	0	0			REV__ENSG00000101825|ENST00000217939|MXRA5;REV__ENST00000420610.1_1_Y:14088999-14090148:+|nuORF	REV__ENSG00000101825|ENST00000217939|MXRA5	MULTI-SECPEP	A375_MHC_IP_R1	1	443.6113586425781	2	444.227082	886.439611	-0.083762	-3.7209E-05	-0.49828	-0.00022135	-0.58204	-0.00025856	444.22678337505346	50.606	0.50914	50.606	50.254	50.764	0					13	9	2	0	0	0	0.972	1	17845	17845		1.6526	0	1	581210	+		60697	17186;24571	44275	44623	59128	59128					-0.008150847531851468
VTDKFTESVY	10	Unmodified	_VTDKFTESVY_					0	0	0		ENST00000591398.1_1_19:19293380-19297824:-|nuORF;nc|ENSG00000254901|Q96FH0-2|BORCS8;ENSG00000254901|ENST00000462790|BORCS8;ENST00000602438.1_1_19:19260194-19302926:-|nuORF	ENST00000591398.1_1_19:19293380-19297824:-|nuORF	ENST00000591398.1_1_19:19293380-19297824:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	595.1923828125	2	594.792786	1187.57102	-0.074405	-4.4256E-05	-0.050536	-3.0059E-05	-0.12494	-7.4314E-05	594.7928093429117	49.643	0.55989	49.643	49.285	49.845	0					29	10	4	0	0	0	0.22444	1	17521	17521		69.338	33.211	1	10756000			60698	9883	44276	44624	59129	59129					-0.015263191759231631
VTDKFTESVY	10	Unmodified	_VTDKFTESVY_					0	0	0		ENST00000591398.1_1_19:19293380-19297824:-|nuORF;nc|ENSG00000254901|Q96FH0-2|BORCS8;ENSG00000254901|ENST00000462790|BORCS8;ENST00000602438.1_1_19:19260194-19302926:-|nuORF	ENST00000591398.1_1_19:19293380-19297824:-|nuORF	ENST00000591398.1_1_19:19293380-19297824:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	595.1922607421875	2	594.792786	1187.57102	-0.70573	-0.00041976	0.26536	0.00015784	-0.44037	-0.00026193	594.7929105125471	49.009	0.51034	49.767	49.434	49.944	0.75737					29	9	4	0	0	0	0.10905	1	18351	18351		84.522	48.395	1	11853000			60699	9883	44276	44624	59130	59130					-0.015263191759231631
VTDKIHKAYK	10	Unmodified	_VTDKIHKAYK_					0	0	0		ENSG00000111670|ENST00000299314|GNPTAB;ENST00000549194.1_1_12:102150985-102153918:-|nuORF	ENSG00000111670|ENST00000299314|GNPTAB	ENSG00000111670|ENST00000299314|GNPTAB	MULTI-MSMS	A375_MHC_IP_R1	1	401.9678955078125	3	401.567912	1201.68191	-0.25754	-0.00010342	0.59092	0.00023729	0.33338	0.00013388	401.5681415376216	52.093	0.50776	52.093	51.829	52.336	0					20	9	3	0	0	0	0.61662	1	18512	18512		19.626	10.382	1	3709700			60700	3012	44277	44625	59131	59131					0.0891336532281457
VTDKIHKAYK	10	Unmodified	_VTDKIHKAYK_					0	0	0		ENSG00000111670|ENST00000299314|GNPTAB;ENST00000549194.1_1_12:102150985-102153918:-|nuORF	ENSG00000111670|ENST00000299314|GNPTAB	ENSG00000111670|ENST00000299314|GNPTAB	MULTI-MSMS	A375_MHC_IP_R2	2	401.96771240234375	3	401.567912	1201.68191	-0.18174	-7.2979E-05	-0.098468	-3.9542E-05	-0.2802	-0.00011252	401.5678652082823	51.298	0.50751	52.05	51.864	52.372	0.75225					16	9	3	0	0	0	0.58757	2	19323	19306;19323		21.799	6.9616	1	3376100			60701	3012	44277	44625	59132;59133	59133					0.0891336532281457
VTDKSMVDKY	10	Unmodified	_VTDKSMVDKY_					0	0	0		nc|ENSG00000136813|Q5VYK3|ECPAS;ENSG00000136813|ENST00000684092|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-SECPEP	A375_MHC_IP_R1	1	396.2483825683594	3	395.865518	1184.57472	-0.27994	-0.00011082	0.10773	4.2648E-05	-0.17221	-6.8171E-05	395.8655370010056	24.017	0.96203	24.017	23.635	24.597	0					44	18	4	0	0	0	0.10905	1	6694	6694		66.55	37.268	1	101660000			60702	4820	44278	44626	59134	59134					-0.010179726737305828
VTDKSMVDKY	10	Unmodified	_VTDKSMVDKY_					0	0	0		nc|ENSG00000136813|Q5VYK3|ECPAS;ENSG00000136813|ENST00000684092|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-SECPEP	A375_MHC_IP_R1	1	593.6943969726562	2	593.294639	1184.57472	-0.59028	-0.00035021	0.064676	3.8372E-05	-0.5256	-0.00031184	593.2947250633873	24.017	0.50729	24.017	23.94	24.447	0					14	9	3	0	0	0	0.087188	1	6741	6741		78.116	43.184	1	18756000			60703	4820	44278	44626	59135	59135					-0.010179726737305828
VTDKSMVDKY	10	Unmodified	_VTDKSMVDKY_					0	0	0		nc|ENSG00000136813|Q5VYK3|ECPAS;ENSG00000136813|ENST00000684092|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-SECPEP	A375_MHC_IP_R2	2	396.26531982421875	3	395.865518	1184.57472	-0.38066	-0.00015069	0.055168	2.1839E-05	-0.32549	-0.00012885	395.8654615505471	23.885	0.50989	24.516	24.283	24.792	0.63014					19	9	3	0	0	0	0.44315	1	7780	7780		40.714	20.727	1	15842000			60704	4820	44278	44626	59136	59136					-0.010179726737305828
VTDKSMVDKY	10	Unmodified	_VTDKSMVDKY_					0	0	0		nc|ENSG00000136813|Q5VYK3|ECPAS;ENSG00000136813|ENST00000684092|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-SECPEP	A375_MHC_IP_R2	2	396.26519775390625	3	395.865518	1184.57472	-0.43472	-0.00017209	0.040071	1.5863E-05	-0.39465	-0.00015623	395.8655676367632	23.374	0.5058	24.005	23.777	24.283	0.63014					25	9	4	0	0	0	0.021562	1	7494	7494		98.634	72.513	1	91775000			60705	4820	44278	44626	59137	59137					-0.010179726737305828
VTDKSMVDKY	10	Unmodified	_VTDKSMVDKY_					0	0	0		nc|ENSG00000136813|Q5VYK3|ECPAS;ENSG00000136813|ENST00000684092|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-SECPEP	A375_MHC_IP_R2	2	593.6685180664062	2	593.294639	1184.57472	-0.87232	-0.00051754	0.29693	0.00017617	-0.57539	-0.00034137	593.2947583049123	23.374	0.30159	24.005	23.828	24.129	0.63014					11	5	3	0	0	0	0.014374	1	7499	7499		139.54	81.818	1	17177000			60706	4820	44278	44626	59138	59138					-0.010179726737305828
VTDKSMVDKY	10	Oxidation (M)	_VTDKSM(Oxidation (M))VDKY_		VTDKSM(1)VDKY		VTDKSM(44)VDKY	0	0	1		nc|ENSG00000136813|Q5VYK3|ECPAS;ENSG00000136813|ENST00000684092|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-SECPEP	A375_MHC_IP_R1	1	401.60858154296875	3	401.197156	1200.56964	-0.24705	-9.9116E-05	1.2139	0.00048701	0.96685	0.0003879	401.197776787742	20.229	1.3732	20.229	19.725	21.098	0					65	26	4	0	0	0	0.54155	1	5203	5203		44.207	44.207	1	15430000			60707	4820	44278	44627	59139	59139		254			-0.02262276536362151
VTDKSMVDKY	10	Oxidation (M)	_VTDKSM(Oxidation (M))VDKY_		VTDKSM(1)VDKY		VTDKSM(42)VDKY	0	0	1		nc|ENSG00000136813|Q5VYK3|ECPAS;ENSG00000136813|ENST00000684092|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-MSMS	A375_MHC_IP_R2	2	401.59698486328125	3	401.197156	1200.56964	-0.32765	-0.00013145	0.1555	6.2388E-05	-0.17215	-6.9065E-05	401.1971682317653	23.382	0.45495	24.012	23.828	24.283	0.63014					15	7	3	0	0	0	0.27023	1	7519	7519		42.068	21.653	1	10189000			60708	4820	44278	44627	59140	59140		254			-0.02262276536362151
VTDKSMVDKY	10	Oxidation (M)	_VTDKSM(Oxidation (M))VDKY_		VTDKSM(1)VDKY		VTDKSM(63)VDKY	0	0	1		nc|ENSG00000136813|Q5VYK3|ECPAS;ENSG00000136813|ENST00000684092|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-SECPEP	A375_MHC_IP_R2	2	400.9521484375	3	401.197156	1200.56964	-0.33779	-0.00013552	-0.30293	-0.00012154	-0.64072	-0.00025706	401.19709198987596	19.914	1.5198	20.524	20.197	21.717	0.61029					66	29	4	0	0	0	0.25253	1	6150	6150		62.894	62.894	1	10006000			60709	4820	44278	44627	59141	59141		254			-0.02262276536362151
VTDKSMVDKY	10	Oxidation (M)	_VTDKSM(Oxidation (M))VDKY_		VTDKSM(1)VDKY		VTDKSM(63)VDKY	0	0	1		nc|ENSG00000136813|Q5VYK3|ECPAS;ENSG00000136813|ENST00000684092|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-SECPEP	A375_MHC_IP_R2	2	601.6917114257812	2	601.292096	1200.56964	-0.80541	-0.00048429	-0.059187	-3.5589E-05	-0.86459	-0.00051987	601.2923115126463	19.864	0.30246	20.474	20.349	20.651	0.61029					7	5	2	0	0	0	0.23905	1	6159	6159		62.78	43.523	1	1929500			60710	4820	44278	44627	59142	59142		254			-0.02262276536362151
VTDLAGNEY	9	Unmodified	_VTDLAGNEY_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	A375_MHC_IP_R1	1	491.6296081542969	2	491.229822	980.445091	0.14403	7.0751E-05	-0.14584	-7.1641E-05	-0.0018115	-8.8985E-07	491.22954092858896	48.925	1.3191	48.925	48.577	49.896	0					62	25	3	0	0	0	0.13797	1	17228	17228		43.858	13.633	1	14160000			60711	9113	44279	44628	59143	59143					-0.045914059613664904
VTDLAGNEY	9	Unmodified	_VTDLAGNEY_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	A375_MHC_IP_R2	2	491.665283203125	2	491.229822	980.445091	-0.52019	-0.00025553	0.18919	9.2936E-05	-0.331	-0.0001626	491.22975400733975	48.298	1.4172	49.055	48.678	50.096	0.75737					68	27	3	0	0	0	0.01001	3	18146	18078;18146;18229		123.45	56.107	1	17130000			60712	9113	44279	44628	59144;59145;59146	59145					-0.045914059613664904
VTDLCQWEE	9	Unmodified	_VTDLCQWEE_					0	0	0			REV__ENSG00000196350|ENST00000601693|ZNF729	REV__ENSG00000196350|ENST00000601693|ZNF729	MULTI-MSMS	A375_MHC_IP_R2	2	562.1387329101562	2	561.742239	1121.46993	-0.51194	-0.00028758	-1.134	-0.000637	-1.6459	-0.00092458	561.7416317349661	64.14	0.91558	64.88	64.344	65.259	0.74023					41	17	3	0	0	0	0.17338	1	24267	24267		39.95	3.8227	1	4308300	+		60713	22184	44280	44629	59147	59147					-0.08595094150291516
VTDLFSVSYLW	11	Unmodified	_VTDLFSVSYLW_					0	0	0		ENST00000275732.5_1_7:100286590-100286938:-|nuORF	ENST00000275732.5_1_7:100286590-100286938:-|nuORF	ENST00000275732.5_1_7:100286590-100286938:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	665.2394409179688	2	665.339904	1328.66525	-0.55888	-0.00037184	1.9437	0.0012933	1.3849	0.00092141	665.3413403631727	74.249	0.65927	74.249	73.74	74.4	0					15	12	2	0	0	0	0.72728	1	26986	26986		11.495	1.4208	1	3261700			60714	10404	44281	44630	59148	59148					0.0140681964619489
VTDLLAHTNY	10	Unmodified	_VTDLLAHTNY_					0	0	0		nc|ENSG00000044524|P29320-2|EPHA3;ENSG00000044524|ENST00000336596|EPHA3	nc|ENSG00000044524|P29320-2|EPHA3	nc|ENSG00000044524|P29320-2|EPHA3	MULTI-MSMS	A375_MHC_IP_R1	1	574.1934204101562	2	573.793121	1145.57169	-0.29342	-0.00016836	-0.59504	-0.00034143	-0.88846	-0.00050979	573.7930987083813	58.514	0.4074	58.514	58.278	58.685	0					16	7	3	0	0	0	0.0079374	1	21009	21009		93.938	40.105	1	4030600			60715	1187	44282	44631	59149	59149					0.0047252026377009315
VTDLLAHTNY	10	Unmodified	_VTDLLAHTNY_					0	0	0		nc|ENSG00000044524|P29320-2|EPHA3;ENSG00000044524|ENST00000336596|EPHA3	nc|ENSG00000044524|P29320-2|EPHA3	nc|ENSG00000044524|P29320-2|EPHA3	MULTI-SECPEP	A375_MHC_IP_R2	2	574.19287109375	2	573.793121	1145.57169	-0.52359	-0.00030043	-0.15225	-8.7362E-05	-0.67584	-0.00038779	573.7928652093049	57.73	0.50893	58.479	58.17	58.679	0.74895					21	9	3	0	0	0	0.02145	1	21826	21826		151.48	47.732	1	3163700			60716	1187	44282	44631	59150	59150					0.0047252026377009315
VTDLLKELV	9	Unmodified	_VTDLLKELV_					0	0	0		ENST00000498819.1_1_9:91963122-91972225:+|nuORF;nc|ENSG00000187742|Q96T21-2|SECISBP2;nc|ENSG00000187742|Q96T21-3|SECISBP2;ENSG00000187742|ENST00000375807|SECISBP2	ENST00000498819.1_1_9:91963122-91972225:+|nuORF	ENST00000498819.1_1_9:91963122-91972225:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	515.7132568359375	2	515.313158	1028.61176	-0.43565	-0.0002245	-0.08076	-4.1617E-05	-0.51641	-0.00026611	515.313010264902	105.27	0.50866	105.27	104.94	105.45	0					23	9	3	0	0	0	0.011143	1	38615	38615		125.04	25.239	1	4103700			60717	8854	44283	44632	59151	59151					0.098600669343341
VTDLLKELV	9	Unmodified	_VTDLLKELV_					0	0	0		ENST00000498819.1_1_9:91963122-91972225:+|nuORF;nc|ENSG00000187742|Q96T21-2|SECISBP2;nc|ENSG00000187742|Q96T21-3|SECISBP2;ENSG00000187742|ENST00000375807|SECISBP2	ENST00000498819.1_1_9:91963122-91972225:+|nuORF	ENST00000498819.1_1_9:91963122-91972225:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	515.7124633789062	2	515.313158	1028.61176	-0.7114	-0.00036659	0.048559	2.5023E-05	-0.66284	-0.00034157	515.3131288060542	104.25	0.81438	105.02	104.55	105.36	0.76308					32	15	3	0	0	0	0.011143	1	39456	39456		125.04	13.751	1	3124400			60718	8854	44283	44632	59152	59152					0.098600669343341
VTDLPFLY	8	Unmodified	_VTDLPFLY_					0	0	0			REV__ENST00000553986.1_1_14:60616272-60619703:-|nuORF	REV__ENST00000553986.1_1_14:60616272-60619703:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	484.6600646972656	2	484.260394	966.506234	-0.67027	-0.00032459	0.053151	2.5739E-05	-0.61712	-0.00029885	484.2603415236534	106.97	0.76147	107.73	107.44	108.2	0.75898					21	14	2	0	0	0	0.75322	1	40502	40502		19.439	1.304	1	1308100	+		60719	26074	44284	44633	59153	59153					0.021641508086986505
VTDLPHGVIV	10	Unmodified	_VTDLPHGVIV_					0	0	0			REV__nc|ENSG00000145832|Q6ZT89-3|SLC25A48	REV__nc|ENSG00000145832|Q6ZT89-3|SLC25A48	MULTI-SECPEP	A375_MHC_IP_R2	2	525.7020263671875	2	525.303124	1048.5917	-0.38163	-0.00020047	-0.16476	-8.6548E-05	-0.54638	-0.00028702	525.3030489479273	87.299	0.50528	88.032	87.762	88.268	0.733					24	9	3	0	0	0	0.57563	1	33163	33163		32.305	0	1	5305500	+		60720	19495	44285	44634	59154	59154					0.06934315994362805
VTDLQAGEEY	10	Unmodified	_VTDLQAGEEY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R1	1	563.1582641601562	2	562.758943	1123.50333	-0.90781	-0.00051088	0.36158	0.00020348	-0.54624	-0.0003074	562.7590571532086	29.257	0.50831	29.257	29.047	29.555	0					20	9	3	0	0	0	0.33054	1	9115	9115		47.749	3.8904	1	30331000			60721	6151;14694	44286	44635	59155	59155					-0.05347769106742817
VTDNAVYHW	9	Unmodified	_VTDNAVYHW_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	A375_MHC_IP_R1	1	553.1588745117188	2	552.759081	1103.50361	-0.54345	-0.0003004	0.23772	0.0001314	-0.30573	-0.00016899	552.7591460422719	54.871	1.1148	54.871	54.113	55.228	0					46	21	4	0	0	0	0.0019764	3	19552	19552;19589;19712		176.84	108.76	1	18829000			60722	5230	44287	44636	59156;59157;59158	59156					-0.04400304596265414
VTDNAVYHW	9	Unmodified	_VTDNAVYHW_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	A375_MHC_IP_R2	2	553.158935546875	2	552.759081	1103.50361	-1.0821	-0.00059814	0.33818	0.00018693	-0.74391	-0.00041121	552.7591951075535	54.187	0.91659	54.938	54.505	55.422	0.75077					47	17	4	0	0	0	0.0043431	1	20402	20402		191.38	123.3	1	22757000			60723	5230	44287	44636	59159	59159					-0.04400304596265414
VTDNRAFGY	9	Unmodified	_VTDNRAFGY_					0	0	0		nc|ENSG00000153071|P98082-2|DAB2;nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2	nc|ENSG00000153071|P98082-2|DAB2	nc|ENSG00000153071|P98082-2|DAB2	MULTI-SECPEP	A375_MHC_IP_R1	1	522.1505126953125	2	521.751256	1041.48796	-0.63569	-0.00033167	0.91111	0.00047537	0.27542	0.0001437	521.7517664675391	36.887	1.1688	36.887	36.592	37.761	0					33	22	2	0	0	0	0.05217	1	12384	12384		89.401	55.298	1	18713000			60724	6004	44288	44637	59160	59160					-0.031125911132676265
VTDNRAFGY	9	Unmodified	_VTDNRAFGY_					0	0	0		nc|ENSG00000153071|P98082-2|DAB2;nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2	nc|ENSG00000153071|P98082-2|DAB2	nc|ENSG00000153071|P98082-2|DAB2	MULTI-SECPEP	A375_MHC_IP_R2	2	522.150634765625	2	521.751256	1041.48796	-0.75695	-0.00039494	0.80966	0.00042244	0.052703	2.7498E-05	521.7517025425202	36.14	0.91799	36.911	36.646	37.564	0.7709					31	17	2	0	0	0	0.036758	1	13115	13115		89.401	55.298	1	19558000			60725	6004	44288	44637	59161	59161					-0.031125911132676265
VTDPDVVLH	9	Unmodified	_VTDPDVVLH_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	A375_MHC_IP_R1	1	498.2057189941406	2	497.763832	993.513111	0.15524	7.7272E-05	-1.3155	-0.0006548	-1.1602	-0.00057752	497.7635717659562	44.988	0.60732	44.988	44.727	45.334	0					26	11	3	0	0	0	0.0094266	2	15700	15700;15714		109.63	58.774	1	6528400			60726	7930	44289	44638	59162;59163	59162					0.01609463689283075
VTDPDVVLH	9	Unmodified	_VTDPDVVLH_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-SECPEP	A375_MHC_IP_R2	2	497.1726989746094	2	497.763832	993.513111	-0.4302	-0.00021414	-0.93778	-0.00046679	-1.368	-0.00068093	497.76377837538286	44.244	0.86103	45.013	44.631	45.492	0.7691					33	16	3	0	0	0	0.24479	1	16454	16454		42.095	18.946	1	6279200			60727	7930	44289	44638	59164	59164					0.01609463689283075
VTDPEKLNNY	10	Unmodified	_VTDPEKLNNY_					0	0	0		nc|ENSG00000104885|Q8TEK3-1|DOT1L;ENSG00000104885|ENST00000398665|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	MULTI-MSMS	A375_MHC_IP_R1	1	597.1959838867188	2	596.79586	1191.57717	-0.45796	-0.00027331	0.25419	0.0001517	-0.20377	-0.00012161	596.7959989205141	34.531	0.55579	34.531	34.203	34.759	0					33	10	4	0	0	0	3.7512E-11	1	11352	11352		222.22	150.29	1	35045000			60728	14521	44290	44639	59165	59165					-0.010958009444266281
VTDPEKLNNY	10	Unmodified	_VTDPEKLNNY_					0	0	0		nc|ENSG00000104885|Q8TEK3-1|DOT1L;ENSG00000104885|ENST00000398665|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	MULTI-MSMS	A375_MHC_IP_R2	2	597.1953735351562	2	596.79586	1191.57717	-1.045	-0.00062364	0.66135	0.00039469	-0.38363	-0.00022895	596.7962048233389	33.898	0.60661	34.65	34.348	34.955	0.75225					32	11	4	0	0	0	0.00046767	1	12135	12135		150.62	89.261	1	29642000			60729	14521	44290	44639	59166	59166					-0.010958009444266281
VTDPRNLLL	9	Unmodified	_VTDPRNLLL_					0	0	0		ENSG00000107819|ENST00000393459|SFXN3	ENSG00000107819|ENST00000393459|SFXN3	ENSG00000107819|ENST00000393459|SFXN3	MULTI-SECPEP	A375_MHC_IP_R1	1	521.2078857421875	2	520.808574	1039.60259	-0.48916	-0.00025476	-0.31453	-0.00016381	-0.80369	-0.00041857	520.8085624410538	83.201	0.60931	83.201	82.924	83.533	0					21	11	2	0	0	0	0.37663	1	30424	30424		43.772	0	1	3977100			60730	2762	44291	44640	59167	59167					0.08437718368668357
VTDPRNLLL	9	Unmodified	_VTDPRNLLL_					0	0	0		ENSG00000107819|ENST00000393459|SFXN3	ENSG00000107819|ENST00000393459|SFXN3	ENSG00000107819|ENST00000393459|SFXN3	MULTI-MATCH	A375_MHC_IP_R2	2		2	520.808574	1039.60259	-0.66505	-0.00034637	0.12546	6.5342E-05	-0.53959	-0.00028102	520.8086496093078	82.427	0.61163	83.17	82.735	83.347	0.74293	-0.015422	0.00021116	NaN	36.506	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2587200			60731	2762	44291	44640							0.08437718368668357
VTDPSTLEQY	10	Unmodified	_VTDPSTLEQY_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	A375_MHC_IP_R1	1	576.6903076171875	2	576.774593	1151.53463	-0.16394	-9.4554E-05	-0.13519	-7.7973E-05	-0.29912	-0.00017253	576.7744721795666	59.468	1.3725	59.468	59.041	60.414	0					70	26	4	0	0	0	8.3159E-11	1	21343	21343		220.1	131.14	1	82012000			60732	9113	44292	44641	59168	59168					-0.03507196072655461
VTDPSTLEQY	10	Unmodified	_VTDPSTLEQY_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	A375_MHC_IP_R2	2	576.6895141601562	2	576.774593	1151.53463	-0.54089	-0.00031197	-0.10006	-5.7712E-05	-0.64095	-0.00036968	576.774356814834	58.899	1.1645	59.646	59.185	60.349	0.74714					94	22	7	0	0	0	0.080535	1	22160	22160		67.838	27.888	1	85985000			60733	9113	44292	44641	59169	59169					-0.03507196072655461
VTDPTGFLRM	10	Oxidation (M)	_VTDPTGFLRM(Oxidation (M))_		VTDPTGFLRM(1)		VTDPTGFLRM(46)	0	0	1		ENSG00000100154|ENST00000397906|TTC28	ENSG00000100154|ENST00000397906|TTC28	ENSG00000100154|ENST00000397906|TTC28	MULTI-MSMS	A375_MHC_IP_R1	1	577.2298583984375	2	576.789524	1151.56449	-0.088408	-5.0993E-05	1.4829	0.00085532	1.3945	0.00080432	576.7906451740421	68.794	0.70889	68.794	68.412	69.121	0					28	13	3	0	0	0	0.23431	1	24864	24864		45.74	14.472	1	3419000			60734	2128	44293	44642	59170	59170		80			-0.005225356082974031
VTDPTGFLRM	10	Unmodified	_VTDPTGFLRM_					0	0	0		ENSG00000100154|ENST00000397906|TTC28	ENSG00000100154|ENST00000397906|TTC28	ENSG00000100154|ENST00000397906|TTC28	MULTI-MSMS	A375_MHC_IP_R1	1	569.693603515625	2	568.792066	1135.56958	-0.11506	-6.5446E-05	-1.1063	-0.00062927	-1.2214	-0.00069472	568.792081769774	92.471	0.50758	92.471	92.16	92.668	0					20	9	3	0	0	0	0.15934	1	33970	33970		53.404	19.002	1	2165800			60735	2128	44293	44643	59171	59171					0.0072176825433416525
VTDPVHELE	9	Unmodified	_VTDPVHELE_					0	0	0			REV__nc|ENSG00000174989|Q8N3Y1-2|FBXW8	REV__nc|ENSG00000174989|Q8N3Y1-2|FBXW8	MULTI-SECPEP	A375_MHC_IP_R1	1	520.1580810546875	2	519.758746	1037.50294	-0.607	-0.00031549	-1.1481	-0.00059675	-1.7551	-0.00091224	519.7580946127198	28.803	0.71086	28.803	28.541	29.252	0					23	13	3	0	0	0	0.1277	1	8931	8931		54.774	18.647	1	4931700	+		60736	21318	44294	44644	59172	59172					-0.014311440359733751
VTDPVHELE	9	Unmodified	_VTDPVHELE_					0	0	0			REV__nc|ENSG00000174989|Q8N3Y1-2|FBXW8	REV__nc|ENSG00000174989|Q8N3Y1-2|FBXW8	MULTI-SECPEP	A375_MHC_IP_R2	2	520.1580200195312	2	519.758746	1037.50294	-0.91594	-0.00047607	-0.71894	-0.00037368	-1.6349	-0.00084975	519.7584323315917	28.154	0.60996	28.833	28.553	29.163	0.67857					22	11	3	0	0	0	0.1277	1	9705	9705		54.774	20.671	1	5346100	+		60737	21318	44294	44644	59173	59173					-0.014311440359733751
VTDQASHIY	9	Unmodified	_VTDQASHIY_					0	0	0		ENST00000515608.5_1_8:6484738-6484828:-|nuORF	ENST00000515608.5_1_8:6484738-6484828:-|nuORF	ENST00000515608.5_1_8:6484738-6484828:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	517.6505737304688	2	517.251089	1032.48762	-0.73602	-0.00038071	-0.61619	-0.00031872	-1.3522	-0.00069943	517.2507862960696	28.007	0.65448	28.007	27.786	28.44	0					22	12	3	0	0	0	0.022401	1	8572	8572		99.755	34.52	1	8372700			60738	12953	44295	44645	59174	59174					-0.027320108331196025
VTDQASHIY	9	Unmodified	_VTDQASHIY_					0	0	0		ENST00000515608.5_1_8:6484738-6484828:-|nuORF	ENST00000515608.5_1_8:6484738-6484828:-|nuORF	ENST00000515608.5_1_8:6484738-6484828:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	517.6506958007812	2	517.251089	1032.48762	-0.67294	-0.00034808	-0.52909	-0.00027367	-1.202	-0.00062175	517.2508010893597	27.394	0.55796	28.073	27.843	28.401	0.67857					16	10	2	0	0	0	0.0099819	1	9357	9357		122.18	56.944	1	7632900			60739	12953	44295	44645	59175	59175					-0.027320108331196025
VTDQNKIVTY	10	Unmodified	_VTDQNKIVTY_					0	0	0		ENSG00000077514|ENST00000263681|POLD3;ENST00000532497.5_1_11:74303703-74322559:+|nuORF;ENST00000532784.5_1_11:74303703-74306426:+|nuORF	ENSG00000077514|ENST00000263681|POLD3	ENSG00000077514|ENST00000263681|POLD3	MULTI-SECPEP	A375_MHC_IP_R1	1	591.2139892578125	2	590.814053	1179.61355	-0.27954	-0.00016515	0.17543	0.00010364	-0.10411	-6.151E-05	590.8142095110459	36.031	0.45783	36.031	35.83	36.287	0					19	8	3	0	0	0	0.027581	1	12048	12048		118.81	63.578	1	3722800			60740	1658	44296	44646	59176	59176					0.030930759523016604
VTDQNKIVTY	10	Unmodified	_VTDQNKIVTY_					0	0	0		ENSG00000077514|ENST00000263681|POLD3;ENST00000532497.5_1_11:74303703-74322559:+|nuORF;ENST00000532784.5_1_11:74303703-74306426:+|nuORF	ENSG00000077514|ENST00000263681|POLD3	ENSG00000077514|ENST00000263681|POLD3	MULTI-MSMS	A375_MHC_IP_R2	2	591.2142333984375	2	590.814053	1179.61355	-0.80671	-0.00047662	0.52001	0.00030723	-0.28669	-0.00016938	590.8143373930163	35.336	0.40456	36.099	35.878	36.283	0.76338					19	7	3	0	0	0	0.0056719	1	12822	12822		102.55	58.157	1	4643100			60741	1658	44296	44646	59177	59177					0.030930759523016604
VTDQRSCKD	9	Carbamidomethyl (C)	_VTDQRSC(Carbamidomethyl (C))KD_	VTDQRSC(1)KD		VTDQRSC(42)KD		0	1	0			REV__nc|ENSG00000084710|Q9Y2G0-2|EFR3B	REV__nc|ENSG00000084710|Q9Y2G0-2|EFR3B	MULTI-MSMS	A375_MHC_IP_R1	1	555.2266845703125	2	554.756212	1107.49787	-0.55353	-0.00030707	0.79051	0.00043854	0.23698	0.00013147	554.7564231513825	54.858	0.55894	54.858	54.567	55.126	0					19	10	3	0	0	0	0.14922	1	19601	19601		41.84	11.999	1	1662500	+		60742	16827	44297	44647	59178	59178	71				-0.051577711702066154
VTDRSDARLQY	11	Unmodified	_VTDRSDARLQY_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MSMS	A375_MHC_IP_R1	1	442.29302978515625	3	441.893236	1322.65788	-0.20273	-8.9584E-05	-0.29668	-0.0001311	-0.49941	-0.00022069	441.8931003983647	25.581	0.65988	25.581	25.357	26.017	0					42	12	5	0	0	0	0.037721	1	7467	7467		81.642	63.302	1	77050000			60743	3476	44298	44648	59179	59179					0.009454800984940448
VTDRSDARLQY	11	Unmodified	_VTDRSDARLQY_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MSMS	A375_MHC_IP_R1	1	662.7359008789062	2	662.336215	1322.65788	-0.65013	-0.0004306	0.042975	2.8464E-05	-0.60715	-0.00040214	662.3363865107701	25.588	0.60923	25.588	25.408	26.017	0					24	11	3	0	0	0	0.0010212	1	7496	7496		121.93	81.98	1	15462000			60744	3476	44298	44648	59180	59180					0.009454800984940448
VTDRSDARLQY	11	Unmodified	_VTDRSDARLQY_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MSMS	A375_MHC_IP_R2	2	442.2930908203125	3	441.893236	1322.65788	-0.77162	-0.00034097	0.048593	2.1473E-05	-0.72303	-0.0003195	441.89325719085525	25.05	0.61329	25.694	25.465	26.078	0.64368					39	11	5	0	0	0	0.0015197	1	8306	8306		97.749	76.508	1	84497000			60745	3476	44298	44648	59181	59181					0.009454800984940448
VTDRSDARLQY	11	Unmodified	_VTDRSDARLQY_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MSMS	A375_MHC_IP_R2	2	662.7357788085938	2	662.336215	1322.65788	-1.2941	-0.00085715	0.26891	0.00017811	-1.0252	-0.00067904	662.3366071874768	25.051	0.61189	25.695	25.516	26.128	0.64368					26	11	4	0	0	0	0.020021	1	8327	8327		93.448	53.499	1	16755000			60746	3476	44298	44648	59182	59182					0.009454800984940448
VTDRVCQKL	9	Unmodified	_VTDRVCQKL_					0	0	0			REV__ENSG00000138193|ENST00000371380|PLCE1	REV__ENSG00000138193|ENST00000371380|PLCE1	MULTI-SECPEP	A375_MHC_IP_R1	1	354.9225769042969	3	354.530581	1060.56991	-0.070597	-2.5029E-05	-0.53118	-0.00018832	-0.60177	-0.00021335	354.530509499725	50.465	0.6604	50.465	50.254	50.915	0					21	12	3	0	0	0	0.79535	1	17963	17963		3.8763	1.3778	1	2114400	+		60747	19077	44299	44649	59183	59183					0.042051879741620724
VTDSGPTFNY	10	Unmodified	_VTDSGPTFNY_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;TOP2A|p.S1117F|1|0.38|ENSG00000131747|chr17:40398876-40398876|G/A|missense_variant	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-SECPEP	A375_MHC_IP_R1	1	551.2186889648438	2	550.748379	1099.4822	-0.59068	-0.00032531	0.1377	7.5841E-05	-0.45297	-0.00024947	550.7484191854437	64.556	0.71175	64.556	64.191	64.903	0					38	13	4	0	0	0	0.026214	1	23350	23350		96.367	46.434	1	15398000			60748	4347	44300	44650	59184	59184					-0.06355734415592451
VTDSGPTFNY	10	Unmodified	_VTDSGPTFNY_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;TOP2A|p.S1117F|1|0.38|ENSG00000131747|chr17:40398876-40398876|G/A|missense_variant	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-SECPEP	A375_MHC_IP_R2	2	551.1846313476562	2	550.748379	1099.4822	-0.70993	-0.000391	0.092617	5.1008E-05	-0.61732	-0.00033999	550.7484540925952	63.985	0.71111	64.725	64.394	65.106	0.74022					42	13	4	0	0	0	0.016178	1	24245	24245		163.04	100.46	1	19730000			60749	4347	44300	44650	59185	59185					-0.06355734415592451
VTDSGPTFNYL	11	Unmodified	_VTDSGPTFNYL_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-SECPEP	A375_MHC_IP_R2	2	607.6901245117188	2	607.290411	1212.56627	-0.31041	-0.00018851	-0.12218	-7.42E-05	-0.43259	-0.00026271	607.2901265384938	95.857	0.76196	96.607	96.144	96.906	0.75045					20	14	2	0	0	0	0.69831	1	36397	36397		40.239	20.982	1	2090300			60750	4347	44301	44651	59186	59186					-0.031512033187027555
VTDSIRDEY	9	Unmodified	_VTDSIRDEY_					0	0	0		nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;nc|ENSG00000087470|O00429-7|DNM1L;ENST00000547548.1_1_12:32866256-32875568:+|nuORF	nc|ENSG00000087470|O00429-4|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	MULTI-MSMS	A375_MHC_IP_R1	1	549.6586303710938	2	549.259111	1096.50367	-0.61733	-0.00033907	-0.1789	-9.8264E-05	-0.79623	-0.00043734	549.2590065746198	32.097	0.66536	32.097	31.819	32.485	0					35	12	4	0	0	0	0.0098859	1	10297	10297		117.76	65.492	1	56545000			60751	1874	44302	44652	59187	59187					-0.04072349386888163
VTDSIRDEY	9	Unmodified	_VTDSIRDEY_					0	0	0		nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;nc|ENSG00000087470|O00429-7|DNM1L;ENST00000547548.1_1_12:32866256-32875568:+|nuORF	nc|ENSG00000087470|O00429-4|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	MULTI-MSMS	A375_MHC_IP_R2	2	549.6588134765625	2	549.259111	1096.50367	-0.81038	-0.00044511	0.078001	4.2843E-05	-0.73237	-0.00040226	549.2591105821932	31.436	0.61336	32.154	31.923	32.536	0.71857					38	11	4	0	0	0	0.0094735	1	11079	11079		107.1	54.831	1	56779000			60752	1874	44302	44652	59188	59188					-0.04072349386888163
VTDSTQVNV	9	Unmodified	_VTDSTQVNV_					0	0	0		ENST00000420642.1_7:74765936-74789271:+|nuORF;nc|ENSG00000274523|Q96I51-2|RCC1L;nc|ENSG00000274523|Q96I51-3|RCC1L;ENSG00000274523|ENST00000610322|RCC1L	ENST00000420642.1_7:74765936-74789271:+|nuORF	ENST00000420642.1_7:74765936-74789271:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	482.1429443359375	2	481.743096	961.47164	-0.77666	-0.00037415	0.040713	1.9613E-05	-0.73594	-0.00035454	481.74311766836627	35.595	0.40458	36.358	36.183	36.587	0.76338					12	7	2	0	0	0	0.20645	1	12953	12953		56.177	18.203	1	2117700			60753	10004	44303	44653	59189	59189					-0.010637170700306342
VTDTGALYLY	10	Unmodified	_VTDTGALYLY_					0	0	0		WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENSG00000178252|ENST00000608424|WDR6;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	558.6842041015625	2	558.284597	1114.55464	-0.4538	-0.00025335	0.34253	0.00019123	-0.11127	-6.212E-05	558.2846933187172	97.866	1.2697	97.866	97.389	98.659	0					81	24	5	0	0	0	0.06683	1	35849	35849		71.134	6.8973	1	65543000			60754	8149;11731;12639	44304	44654	59190	59190					0.0019459965794794698
VTDTGALYLY	10	Unmodified	_VTDTGALYLY_					0	0	0		WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENSG00000178252|ENST00000608424|WDR6;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	WDR6|p.P1101Hfs*10|1|0.05|ENSG00000178252|chr3:49015221-49015222|-/CCATGAGTTTGGCCACCGTTGTGAA|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	558.8573608398438	2	558.284597	1114.55464	-0.91223	-0.00050929	0.16808	9.3837E-05	-0.74415	-0.00041545	558.2846278200612	97.041	1.2166	97.797	97.368	98.585	0.75586					68	23	4	0	0	0	0.0045843	1	36890	36890		96.285	32.048	1	67312000			60755	8149;11731;12639	44304	44654	59191	59191					0.0019459965794794698
VTDTNDNH	8	Unmodified	_VTDTNDNH_					0	0	0		nc|ENSG00000102290|Q9BZA7-6|PCDH11X;nc|ENSG00000102290|Q9BZA7-4|PCDH11X;nc|ENSG00000102290|Q9BZA7-3|PCDH11X;nc|ENSG00000102290|Q9BZA7-8|PCDH11X;ENSG00000102290|ENST00000682573|PCDH11X;nc|ENSG00000102290|Q9BZA7-7|PCDH11X;nc|ENSG00000102290|Q9BZA7-2|PCDH11X;ENST00000361724.3_1_X:91090458-91134302:+|nuORF;nc|ENSG00000099715|Q9BZA8-3|PCDH11Y;nc|ENSG00000099715|Q9BZA8-2|PCDH11Y;nc|ENSG00000099715|Q9BZA8-4|PCDH11Y;ENSG00000099715|ENST00000698851|PCDH11Y;nc|ENSG00000102290|Q9BZA7-5|PCDH11X;nc|ENSG00000099715|Q9BZA8|PCDH11Y	nc|ENSG00000102290|Q9BZA7-6|PCDH11X	nc|ENSG00000102290|Q9BZA7-6|PCDH11X	MULTI-SECPEP	A375_MHC_IP_R2	2	915.9347534179688	1	915.380265	914.372988	-0.27515	-0.00025187	-3.5475	-0.0032473	-3.8227	-0.0034992	915.3781131552819	118.96	0.25337	119.56	119.4	119.66	0.60909					6	4	2	0	0	0	0.972	1	45271	45271		2.5775	0	1	16209000			60756	2370	44305	44655	59192	59192					-0.08762320315088346
VTDTNSYAAW	10	Unmodified	_VTDTNSYAAW_					0	0	0		ENSG00000271447|ENST00000605424|MMP28;nc|ENSG00000271447|Q9H239-2|MMP28	ENSG00000271447|ENST00000605424|MMP28	ENSG00000271447|ENST00000605424|MMP28	MULTI-SECPEP	A375_MHC_IP_R1	1	564.1798095703125	2	564.253828	1126.4931	-0.83818	-0.00047294	0.8282	0.00046732	-0.009972	-5.6268E-06	564.2541869182407	29.151	0.50807	29.151	28.895	29.403	0					21	9	3	0	0	0	0.74754	1	9073	9073		17.113	17.113	1	9147900			60757	9986	44306	44656	59193	59193					-0.06508332041335052
VTDWVGDSA	9	Unmodified	_VTDWVGDSA_					0	0	0			REV__nc|ENSG00000213889|Q8N819-2|PPM1N	REV__nc|ENSG00000213889|Q8N819-2|PPM1N	MULTI-SECPEP	A375_MHC_IP_R1	1	475.6166076660156	2	475.216714	948.418876	-0.66603	-0.00031651	0.22741	0.00010807	-0.43862	-0.00020844	475.216766435666	46.996	0.56405	46.996	46.699	47.263	0					17	10	2	0	0	0	0.65246	1	16486	16486		3.5965	3.5965	1	3388000	+		60758	22631	44307	44657	59194	59194					-0.057396751328496975
VTDWVYDY	8	Unmodified	_VTDWVYDY_					0	0	0			REV__nc|ENSG00000131471|Q16853-2|AOC3	REV__nc|ENSG00000131471|Q16853-2|AOC3	MSMS	A375_MHC_IP_R1	1	530.6957397460938	2	530.73474	1059.45493	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.061	1	72.061	71.561	72.561	0								0	0	0	0.16876	1	26205	26205		13.508	1.8676	1		+		60759	18607	44308	44658	59195	59195					-0.07242217955990782
VTDYAHLQPD	10	Unmodified	_VTDYAHLQPD_					0	0	0			REV__CSPG4|p.H750L|1|0.33|ENSG00000173546|chr15:75688816-75688816|T/A|missense_variant	REV__CSPG4|p.H750L|1|0.33|ENSG00000173546|chr15:75688816-75688816|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	580.1746215820312	2	579.774928	1157.5353	-0.56153	-0.00032556	0.011735	6.8035E-06	-0.5498	-0.00031876	579.7749076861915	36.494	0.25288	37.265	37.106	37.359	0.7709					8	4	2	0	0	0	0.66275	1	13334	13334		23.79	0	1	2949900	+		60760	15928	44309	44659	59196	59196					-0.037163566329581954
VTDYGFNDI	9	Unmodified	_VTDYGFNDI_					0	0	0		ENSG00000101890|ENST00000218006|GUCY2F	ENSG00000101890|ENST00000218006|GUCY2F	ENSG00000101890|ENST00000218006|GUCY2F	MULTI-MSMS	A375_MHC_IP_R1	1	523.2000122070312	2	522.237647	1042.46074	-0.51309	-0.00026796	-0.037891	-1.9788E-05	-0.55098	-0.00028774	522.2375530059799	75.589	1.4615	75.589	75.262	76.724	0					74	28	4	0	0	0	0.63811	2	27664	27664;27675		12.532	0	1	30592000			60761	2333	44310	44660	59197;59198	59197					-0.05879119444330172
VTDYPKEI	8	Unmodified	_VTDYPKEI_					0	0	0		tr|U7T0H2|U7T0H2_FUSNUAsparagine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=asnSPE=3SV=1	tr|U7T0H2|U7T0H2_FUSNUAsparagine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=asnSPE=3SV=1	tr|U7T0H2|U7T0H2_FUSNUAsparagine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=asnSPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	482.1503601074219	2	482.752933	963.491313	-0.66183	-0.0003195	0.67079	0.00032383	0.0089604	4.3256E-06	482.75327306576537	81.522	0.6049	82.265	81.928	82.533	0.74293					16	11	2	0	0	0	0.93416	1	30897	30897		14.582	0	1	1738700			60762	29884	44311	44661	59199	59199					0.008106589407248066
VTEAWRRLERF	11	Unmodified	_VTEAWRRLERF_					0	0	0		nc|ENSG00000138399|Q53R41-2|FASTKD1;ENSG00000138399|ENST00000453153|FASTKD1	nc|ENSG00000138399|Q53R41-2|FASTKD1	nc|ENSG00000138399|Q53R41-2|FASTKD1	MSMS	A375_MHC_IP_R2	2	731.9356079101562	2	731.899317	1461.78408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.62	1	125.92	125.42	126.42	0.2951								0	0	0	0.16249	1	49054	49054		5.7319	1.203	1				60763	4990	44312	44662	59200	59200					0.0716603139437666
VTEDGEQEQI	10	Unmodified	_VTEDGEQEQI_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-SECPEP	A375_MHC_IP_R1	1	573.59130859375	2	574.259308	1146.50406	-0.20402	-0.00011716	3.4353	0.0019728	3.2313	0.0018556	574.2612762625486	73.19	0.35506	73.19	73.082	73.437	0					8	6	2	0	0	0	0.85226	1	26705	26705		6.2058	0.44535	1	762440			60764	2330	44313	44663	59201	59201					-0.06332974457700402
VTEDGNQHVY	10	Unmodified	_VTEDGNQHVY_					0	0	0		ENSG00000121350|ENST00000240651|PYROXD1;nc|ENSG00000121350|Q8WU10-2|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	MULTI-MSMS	A375_MHC_IP_R1	1	581.7044677734375	2	581.262185	1160.50982	-0.063499	-3.691E-05	0.10666	6.1999E-05	0.043164	2.509E-05	581.2622155477451	23	0.85865	23	22.419	23.278	0					22	9	3	0	0	0	0.0031567	1	6246	6246		121.35	81.396	1	77172000			60765	3717	44314	44664	59202	59202					-0.06401831155380933
VTEDGNQHVY	10	Unmodified	_VTEDGNQHVY_					0	0	0		ENSG00000121350|ENST00000240651|PYROXD1;nc|ENSG00000121350|Q8WU10-2|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	MULTI-SECPEP	A375_MHC_IP_R1	1	581.6619262695312	2	581.262185	1160.50982	-0.50977	-0.00029631	-0.0023847	-1.3861E-06	-0.51216	-0.0002977	581.2622005554335	23.559	0.56031	23.559	23.278	23.838	0					19	10	3	0	0	0	0.021882	1	6508	6508		107.1	74.794	1	6264900			60766	3717	44314	44664	59203	59203					-0.06401831155380933
VTEDGNQHVY	10	Unmodified	_VTEDGNQHVY_					0	0	0		ENSG00000121350|ENST00000240651|PYROXD1;nc|ENSG00000121350|Q8WU10-2|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	MULTI-MSMS	A375_MHC_IP_R2	2	581.6618041992188	2	581.262185	1160.50982	-0.66396	-0.00038594	0.19506	0.00011338	-0.4689	-0.00027255	581.2622899481561	20.671	1.0128	21.282	20.907	21.919	0.61029					40	19	4	0	0	0	0.0015274	1	6389	6389		152.89	107.19	1	31208000			60767	3717	44314	44664	59204	59204					-0.06401831155380933
VTEDGNQHVY	10	Unmodified	_VTEDGNQHVY_					0	0	0		ENSG00000121350|ENST00000240651|PYROXD1;nc|ENSG00000121350|Q8WU10-2|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	MULTI-MSMS	A375_MHC_IP_R2	2	581.6620483398438	2	581.262185	1160.50982	-0.66414	-0.00038604	-0.04359	-2.5337E-05	-0.70773	-0.00041137	581.262045486113	23.151	0.40747	23.781	23.521	23.928	0.63014					15	7	3	0	0	0	0.015903	1	7424	7424		114.65	74.692	1	5448000			60768	3717	44314	44664	59205	59205					-0.06401831155380933
VTEDGNQHVY	10	Unmodified	_VTEDGNQHVY_					0	0	0		ENSG00000121350|ENST00000240651|PYROXD1;nc|ENSG00000121350|Q8WU10-2|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	MULTI-SECPEP	A375_MHC_IP_R2	2	581.6624145507812	2	581.262185	1160.50982	-0.67006	-0.00038948	0.27252	0.00015841	-0.39754	-0.00023108	581.2624531020969	21.83	0.76476	22.45	21.979	22.744	0.61932					23	14	2	0	0	0	0.55307	1	6886	6886		43.772	22.026	1	1062300			60769	3717	44314	44664	59206	59206					-0.06401831155380933
VTEEAPLKL	9	Unmodified	_VTEEAPLKL_					0	0	0		ENST00000489769.1_1_14:94844788-94846995:-|nuORF;nc|ENSG00000197249|P01009-2|SERPINA1;ENSG00000197249|ENST00000393087|SERPINA1	ENST00000489769.1_1_14:94844788-94846995:-|nuORF	ENST00000489769.1_1_14:94844788-94846995:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	500.4749755859375	2	500.289682	998.564812	-0.32649	-0.00016334	0.011122	5.5641E-06	-0.31537	-0.00015778	500.28952946707085	73.034	0.50748	73.034	72.728	73.235	0					23	9	3	0	0	0	0.034037	1	26558	26558		78.728	3.799	1	4667000			60770	9136	44315	44665	59207	59207					0.06547207383187015
VTEEAPLKL	9	Unmodified	_VTEEAPLKL_					0	0	0		ENST00000489769.1_1_14:94844788-94846995:-|nuORF;nc|ENSG00000197249|P01009-2|SERPINA1;ENSG00000197249|ENST00000393087|SERPINA1	ENST00000489769.1_1_14:94844788-94846995:-|nuORF	ENST00000489769.1_1_14:94844788-94846995:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	500.6890869140625	2	500.289682	998.564812	-0.78686	-0.00039366	0.30819	0.00015419	-0.47866	-0.00023947	500.28967246758145	72.167	0.75983	72.901	72.465	73.225	0.73421					25	14	3	0	0	0	0.14572	1	27351	27351		53.833	6.0841	1	4370900			60771	9136	44315	44665	59208	59208					0.06547207383187015
VTEEDQISY	9	Unmodified	_VTEEDQISY_					0	0	0		PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant;nc|ENSG00000118482|Q92576-2|PHF3;ENSG00000118482|ENST00000262043|PHF3	PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant	PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	542.645263671875	2	542.245669	1082.47678	-0.15124	-8.2011E-05	-0.18183	-9.8596E-05	-0.33307	-0.00018061	542.2455351336132	48.806	0.60749	48.806	48.426	49.033	0					23	11	3	0	0	0	0.030038	1	17200	17200		74.929	13.572	1	4927400			60772	3542	44316	44666	59209	59209					-0.06115457998066631
VTEEDQISY	9	Unmodified	_VTEEDQISY_					0	0	0		PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant;nc|ENSG00000118482|Q92576-2|PHF3;ENSG00000118482|ENST00000262043|PHF3	PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant	PHF3|p.Y1924Ifs*7|1|0.68|ENSG00000118482|chr6:63713355-63713355|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	542.645263671875	2	542.245669	1082.47678	-0.75725	-0.00041062	0.1823	9.8851E-05	-0.57495	-0.00031177	542.2457211679142	48.229	0.55287	48.987	48.678	49.231	0.75737					18	10	2	0	0	0	0.030038	1	18100	18100		74.929	27.18	1	3875700			60773	3542	44316	44666	59210	59210					-0.06115457998066631
VTEEEGVYSV	10	Unmodified	_VTEEEGVYSV_					0	0	0		ENSG00000121361|ENST00000240662|KCNJ8	ENSG00000121361|ENST00000240662|KCNJ8	ENSG00000121361|ENST00000240662|KCNJ8	MULTI-MSMS	A375_MHC_IP_R2	2	556.6605224609375	2	556.261319	1110.50808	-0.80338	-0.00044689	-0.32397	-0.00018021	-1.1273	-0.0006271	556.2611531412743	30.931	0.75871	31.65	31.216	31.974	0.71857					26	14	3	0	0	0	0.092645	1	10895	10895		65.235	6.5562	1	11556000			60774	3718	44317	44667	59211	59211					-0.04274884963979275
VTEEFQPVY	9	Unmodified	_VTEEFQPVY_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	A375_MHC_IP_R1	1	556.66845703125	2	556.268947	1110.52334	-0.52282	-0.00029083	-0.082916	-4.6124E-05	-0.60573	-0.00033695	556.268849170667	77.562	1.6234	77.562	77.184	78.807	0					98	31	5	0	0	0	0.009271	1	28460	28460		103.75	39.512	1	149920000			60775	5837	44318	44668	59212	59212					-0.02749973376126036
VTEEFQPVY	9	Unmodified	_VTEEFQPVY_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	A375_MHC_IP_R2	2	556.66845703125	2	556.268947	1110.52334	-0.77334	-0.00043019	0.031185	1.7347E-05	-0.74216	-0.00041284	556.2689101273552	76.989	1.7278	77.732	77.303	79.031	0.74293					93	33	5	0	0	0	0.009271	2	29156	29156;29373		103.75	50.264	1	185370000			60776	5837	44318	44668	59213;59214	59213					-0.02749973376126036
VTEEFQPVY	9	Unmodified	_VTEEFQPVY_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MSMS	A375_MHC_IP_R2	2	556.2127075195312	2	556.268947	1110.52334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.02	1	132.21	131.71	132.71	0.18953								0	0	0	0.15069	1	51934	51934		20.454	8.213	1				60777	5837	44318	44668	59215	59215					-0.02749973376126036
VTEEGPYF	8	Unmodified	_VTEEGPYF_					0	0	0			REV__ENSG00000087303|ENST00000216286|NID2	REV__ENSG00000087303|ENST00000216286|NID2	MULTI-MSMS	A375_MHC_IP_R2	2	471.6159973144531	2	471.216183	940.417813	-0.98723	-0.0004652	0.20424	9.6243E-05	-0.78298	-0.00036895	471.2162759061132	56.595	1.0204	57.345	56.898	57.918	0.75015					40	19	3	0	0	0	0.7338	1	21353	21353		24.674	0	1	21583000	+		60778	16873	44319	44669	59216	59216					-0.054778895017534524
VTEEIEIY	8	Unmodified	_VTEEIEIY_					0	0	0			REV__tr|U7T6H4|U7T6H4_FUSNURibose-phosphatepyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prsPE=3SV=1	REV__tr|U7T6H4|U7T6H4_FUSNURibose-phosphatepyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prsPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	498.15777587890625	2	498.250223	994.485893	-0.45562	-0.00022701	-3.803	-0.0018948	-4.2586	-0.0021218	498.24863297605157	83.845	0.35928	84.585	84.407	84.766	0.73962					9	6	2	0	0	0	0.70179	1	31836	31836		34.187	7.8461	1	695300	+		60779	28861	44320	44670	59217	59217					-0.011570646417681019
VTEELGAQY	9	Unmodified	_VTEELGAQY_					0	0	0		ENST00000473529.5_1_9:34647835-34648133:+|nuORF;ENST00000554897.5_1_9:34647205-34648116:+|nuORF;ENST00000554944.5_1_9:34647742-34648000:+|nuORF;ENST00000554139.5_1_9:34647742-34648116:+|nuORF;ENST00000555020.5_1_9:34647742-34648507:+|nuORF;ENST00000557706.5_1_9:34647742-34649031:+|nuORF;ENST00000555086.5_1_9:34647111-34648905:+|nuORF;nc|ENSG00000213930|P07902-2|GALT;ENST00000554638.5_1_9:34647742-34650443:+|nuORF;ENSG00000213930|ENST00000378842|GALT	ENST00000473529.5_1_9:34647835-34648133:+|nuORF	ENST00000473529.5_1_9:34647835-34648133:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	504.70318603515625	2	505.245472	1008.47639	-0.30887	-0.00015606	0.45763	0.00023122	0.14876	7.5159E-05	505.2456107748981	51.043	0.50673	51.043	50.764	51.27	0					18	9	3	0	0	0	0.55359	1	18162	18162		21.747	16.991	1	2536800			60780	9591	44321	44671	59218	59218					-0.027508329272791343
VTEELGAQY	9	Unmodified	_VTEELGAQY_					0	0	0		ENST00000473529.5_1_9:34647835-34648133:+|nuORF;ENST00000554897.5_1_9:34647205-34648116:+|nuORF;ENST00000554944.5_1_9:34647742-34648000:+|nuORF;ENST00000554139.5_1_9:34647742-34648116:+|nuORF;ENST00000555020.5_1_9:34647742-34648507:+|nuORF;ENST00000557706.5_1_9:34647742-34649031:+|nuORF;ENST00000555086.5_1_9:34647111-34648905:+|nuORF;nc|ENSG00000213930|P07902-2|GALT;ENST00000554638.5_1_9:34647742-34650443:+|nuORF;ENSG00000213930|ENST00000378842|GALT	ENST00000473529.5_1_9:34647835-34648133:+|nuORF	ENST00000473529.5_1_9:34647835-34648133:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	505.6451110839844	2	505.245472	1008.47639	-0.85279	-0.00043087	0.31917	0.00016126	-0.53362	-0.00026961	505.24558568584933	50.469	0.65892	51.223	50.854	51.513	0.75406					20	12	2	0	0	0	0.32899	1	19011	19011		28.487	13.905	1	1839400			60781	9591	44321	44671	59219	59219					-0.027508329272791343
VTEEPEWL	8	Unmodified	_VTEEPEWL_					0	0	0			REV__ENSG00000113263|ENST00000422843|ITK	REV__ENSG00000113263|ENST00000422843|ITK	MULTI-SECPEP	A375_MHC_IP_R2	2	502.1414489746094	2	501.742565	1001.47058	-0.5999	-0.00030099	-2.6012	-0.0013051	-3.2011	-0.0016061	501.7415753774985	76.044	0.76247	76.784	76.487	77.25	0.74052					23	14	3	0	0	0	0.69059	1	28890	28890		38.151	0.17718	1	1974400	+		60782	17772	44322	44672	59220	59220					-0.03009931438964486
VTEEPQRLFY	10	Unmodified	_VTEEPQRLFY_					0	0	0		nc|ENSG00000104081|Q96LC9-3|BMF;nc|ENSG00000104081|Q96LC9-2|BMF;ENSG00000104081|ENST00000354670|BMF	nc|ENSG00000104081|Q96LC9-3|BMF	nc|ENSG00000104081|Q96LC9-3|BMF	MULTI-SECPEP	A375_MHC_IP_R1	1	640.98974609375	2	641.327328	1280.6401	-0.68236	-0.00043762	0.18291	0.0001173	-0.49945	-0.00032031	641.327714534172	65.362	0.51009	65.362	65.055	65.565	0					16	9	2	0	0	0	0.90513	1	23710	23710		12.241	8.0512	1	723050			60783	2484	44323	44673	59221	59221					0.011007648436134332
VTEEPQRLFY	10	Unmodified	_VTEEPQRLFY_					0	0	0		nc|ENSG00000104081|Q96LC9-3|BMF;nc|ENSG00000104081|Q96LC9-2|BMF;ENSG00000104081|ENST00000354670|BMF	nc|ENSG00000104081|Q96LC9-3|BMF	nc|ENSG00000104081|Q96LC9-3|BMF	MULTI-SECPEP	A375_MHC_IP_R2	2	640.9895629882812	2	641.327328	1280.6401	-0.68384	-0.00043857	0.011476	7.3599E-06	-0.67237	-0.00043121	641.3270952535239	64.646	0.45877	65.387	65.004	65.463	0.74022					13	8	2	0	0	0	0.8528	1	24432	24432		11.495	3.8858	1	1313500			60784	2484	44323	44673	59222	59222					0.011007648436134332
VTEFDAARLV	10	Unmodified	_VTEFDAARLV_					0	0	0		ENSG00000136631|ENST00000644510|VPS45;nc|ENSG00000136631|Q9NRW7-2|VPS45	ENSG00000136631|ENST00000644510|VPS45	ENSG00000136631|ENST00000644510|VPS45	MULTI-SECPEP	A375_MHC_IP_R1	1	561.1851806640625	2	560.803488	1119.59242	-0.40425	-0.00022671	0.67914	0.00038086	0.27489	0.00015416	560.803482878667	89.06	0.91296	89.06	88.867	89.78	0					28	17	2	0	0	0	0.088367	1	32765	32765		75.761	19.584	1	4119000			60785	4803	44324	44674	59223	59223					0.03741110643409229
VTEFEDIKSGY	11	Unmodified	_VTEFEDIKSGY_					0	0	0		nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;SET|p.D163*|1|0.21|ENSG00000119335|chr9:128692935-128692936|-/T|frameshift_variant;ENST00000437270.1_1_9:140535772-140535991:-|nuORF;ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP	nc|ENSG00000119335|Q01105-3|SET;ENSG00000230667|ENST00000596516|SETSIP	nc|ENSG00000119335|Q01105-3|SET	MULTI-MSMS	A375_MHC_IP_R2	2	644.7068481445312	2	644.3088	1286.60305	-0.8685	-0.00055958	-1.1302	-0.00072821	-1.9987	-0.0012878	644.3072299341718	55.866	1.9346	56.616	55.932	57.867	0.75015					62	37	5	0	0	0	0.00010348	2	21083	21083;21539		135.87	81.101	1	17238000			60786	3585;9719	44325	44675	59224;59225	59224					-0.028789514928121207
VTEFMELPN	9	Unmodified	_VTEFMELPN_					0	0	0			REV__ENSG00000142182|ENST00000628202|DNMT3L	REV__ENSG00000142182|ENST00000628202|DNMT3L	MSMS	A375_MHC_IP_R1	1	540.192138671875	2	540.257525	1078.5005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.42	1	110.42	109.92	110.92	0								0	0	0	0.11332	1	40489	40489		37.974	3.8716	1		+		60787	19297	44326	44676	59226	59226					-0.035613157652505834
VTEFQPLYY	9	Unmodified	_VTEFQPLYY_					0	0	0		ENSG00000171759|ENST00000553106|PAH	ENSG00000171759|ENST00000553106|PAH	ENSG00000171759|ENST00000553106|PAH	MULTI-MSMS	A375_MHC_IP_R2	2	580.68701171875	2	580.28714	1158.55973	-0.23702	-0.00013754	-0.21824	-0.00012664	-0.45525	-0.00026418	580.2865810159511	104.5	0.35634	105.26	105.05	105.41	0.76308					12	6	3	0	0	0	0.36834	1	39574	39574		26.268	2.0582	1	1928000			60788	7635	44327	44677	59227	59227					-0.013210964794325264
VTEFQPLYY	9	Unmodified	_VTEFQPLYY_					0	0	0		ENSG00000171759|ENST00000553106|PAH	ENSG00000171759|ENST00000553106|PAH	ENSG00000171759|ENST00000553106|PAH	MULTI-MATCH	A375_MHC_IP_R1	1		2	580.28714	1158.55973	-0.11367	-6.596E-05	-0.1719	-9.975E-05	-0.28557	-0.00016571	580.2871668364438	105.12	0.45769	105.12	104.99	105.45	0	-0.072403	2.7845E-05	NaN	26.268	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1418500			60789	7635	44327	44677							-0.013210964794325264
VTEGEFDSF	9	Unmodified	_VTEGEFDSF_					0	0	0		nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB;TNXB|p.E1912K|1|0.3|ENSG00000168477|chr6:32068990-32068990|C/T|missense_variant	nc|ENSG00000168477|P22105-1|TNXB	nc|ENSG00000168477|P22105-1|TNXB	MSMS	A375_MHC_IP_R2	2	515.6950073242188	2	515.72183	1029.42911	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.463	1	64.204	63.704	64.704	0.74022								0	0	0	0.15486	1	24059	24059		7.9102	0.62092	1				60790	7306	44328	44678	59228	59228					-0.08443112198278868
VTEGGEPYRLY	11	Unmodified	_VTEGGEPYRLY_					0	0	0		nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	MULTI-MSMS	A375_MHC_IP_R1	1	643.21826171875	2	642.31696	1282.61937	-0.33357	-0.00021426	-0.12924	-8.3015E-05	-0.46281	-0.00029727	642.3169015574666	54.136	0.40155	54.136	53.962	54.364	0					18	7	3	0	0	0	0.26393	1	19322	19322		49.527	35.621	1	3603200			60791	1929	44329	44679	59229	59229					-0.010638255360390758
VTEGGEPYRLY	11	Unmodified	_VTEGGEPYRLY_					0	0	0		nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	MULTI-MSMS	A375_MHC_IP_R2	2	642.7169189453125	2	642.31696	1282.61937	-1.2646	-0.0008123	0.31654	0.00020332	-0.94811	-0.00060899	642.3172280034482	53.462	0.51089	54.213	53.995	54.505	0.75105					23	9	3	0	0	0	0.00033631	1	20212	20212		118.21	81.703	1	3926900			60792	1929	44329	44679	59230	59230					-0.010638255360390758
VTEGKELKVF	10	Unmodified	_VTEGKELKVF_					0	0	0		ENST00000289316.2_1_6:26171232-26171412:+|nuORF	ENST00000289316.2_1_6:26171232-26171412:+|nuORF	ENST00000289316.2_1_6:26171232-26171412:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	575.7301025390625	2	575.329339	1148.64412	-0.49095	-0.00028246	0.61671	0.00035481	0.12576	7.2352E-05	575.3296967399988	71.801	0.80811	72.535	72.213	73.021	0.73421					30	15	3	0	0	0	0.83425	1	27193	27193		22.736	0	1	5794400			60793	10464	44330	44680	59231	59231					0.07574854337326542
VTEGPLGCGV	10	Unmodified	_VTEGPLGCGV_					0	0	0		nc|ENSG00000117971|P30926-2|CHRNB4	nc|ENSG00000117971|P30926-2|CHRNB4	nc|ENSG00000117971|P30926-2|CHRNB4	MSMS	A375_MHC_IP_R1	1	466.1778564453125	2	466.23131	930.448068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.48	1	104.48	103.98	104.98	0								0	0	0	0.14522	1	38362	38362		26.884	9.9414	1				60794	14562	44331	44681	59232	59232					-0.019938541082069605
VTEGSQGFF	9	Unmodified	_VTEGSQGFF_					0	0	0		ENST00000380262.7_1_17:7835735-7835930:+|nuORF	ENST00000380262.7_1_17:7835735-7835930:+|nuORF	ENST00000380262.7_1_17:7835735-7835930:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	485.6432189941406	2	486.227082	970.439611	-0.60807	-0.00029566	0.08121	3.9486E-05	-0.52686	-0.00025618	486.2269451299457	77.76	0.46081	78.503	78.265	78.726	0.74293					16	8	3	0	0	0	0.73363	1	29469	29469		10.824	0	1	1010800			60795	11350	44332	44682	59233	59233					-0.04679084753172447
VTEGYNQNEY	10	Unmodified	_VTEGYNQNEY_					0	0	0			REV__ENSG00000149050|ENST00000278314|ZNF214	REV__ENSG00000149050|ENST00000278314|ZNF214	MULTI-SECPEP	A375_MHC_IP_R1	1	608.3548583984375	2	608.759475	1215.5044	-0.31451	-0.00019146	-0.62634	-0.00038129	-0.94085	-0.00057275	608.7591017756355	59.538	0.50771	59.538	59.194	59.701	0					13	9	2	0	0	0	0.92227	1	21458	21458		8.7454	5.4641	1	1135400	+		60796	19656	44333	44683	59234	59234					-0.0947355473783773
VTEHDCFCI	9	Unmodified	_VTEHDCFCI_					0	0	0			REV__ALK|p.G1011E|1|0.29|ENSG00000171094|chr2:29226957-29226957|C/T|missense_variant	REV__ALK|p.G1011E|1|0.29|ENSG00000171094|chr2:29226957-29226957|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	533.667724609375	2	533.720252	1065.42595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.827	1	82.57	82.07	83.07	0.74293								0	0	0	0.15486	1	31083	31083		4.756	0	1		+		60797	15357	44334	44684	59235	59235					-0.10414401848288435
VTEHIPRERL	10	Unmodified	_VTEHIPRERL_					0	0	0		nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS	nc|ENSG00000160285|P48449-2|LSS	nc|ENSG00000160285|P48449-2|LSS	MULTI-MSMS	A375_MHC_IP_R1	1	417.6312561035156	3	417.238566	1248.69387	0.11685	4.8755E-05	-0.4298	-0.00017933	-0.31294	-0.00013057	417.23828690297705	19.604	0.61049	19.604	19.318	19.928	0					25	11	3	0	0	0	0.71245	1	4734	4734		3.5871	0.26742	1	9937900			60798	6412	44335	44685	59236	59236					0.07946982066005148
VTEIDQDKY	9	Unmodified	_VTEIDQDKY_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	A375_MHC_IP_R1	1	556.1693115234375	2	555.769311	1109.52407	-1.0132	-0.00056309	0.43031	0.00023915	-0.58286	-0.00032394	555.7696040819769	29.228	2.7221	29.228	28.945	31.667	0					89	53	5	0	0	0	0.0086813	3	9094	9094;9312;9399		171.46	78.811	1	1106000000			60799	9093	44336	44686	59237;59238;59239	59237					-0.02631178727074257
VTEIDQDKY	9	Unmodified	_VTEIDQDKY_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	A375_MHC_IP_R1	1	556.4833374023438	2	555.769311	1109.52407	-0.74773	-0.00041557	-0.24802	-0.00013784	-0.99575	-0.00055341	555.769131698281	32.83	0.75652	32.83	32.434	33.19	0					19	14	2	0	0	0	0.41879	1	10653	10653		23.79	3.3362	1	1743900			60800	9093	44336	44686	59240	59240					-0.02631178727074257
VTEIDQDKY	9	Unmodified	_VTEIDQDKY_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-SECPEP	A375_MHC_IP_R1	1	556.1802368164062	2	555.769311	1109.52407	-0.6049	-0.00033618	-0.39476	-0.00021939	-0.99966	-0.00055558	555.7691761746921	31.962	0.9674	31.962	31.667	32.634	0					40	18	4	0	0	0	0.061442	1	10181	10181		82.529	22.455	1	10043000			60801	9093	44336	44686	59241	59241					-0.02631178727074257
VTEIDQDKY	9	Unmodified	_VTEIDQDKY_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	A375_MHC_IP_R2	2	555.6763916015625	2	555.769311	1109.52407	-1.3637	-0.0007579	0.1585	8.809E-05	-1.2052	-0.00066981	555.769369146189	28.61	2.5182	29.308	29.08	31.599	0.69872					109	49	4	0	0	0	0.0090499	4	10226	10139;10195;10226;10664		107.56	61.864	1	1671299999.9999998			60802	9093	44336	44686	59242;59243;59244;59245	59244					-0.02631178727074257
VTEIDQDKY	9	Unmodified	_VTEIDQDKY_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-SECPEP	A375_MHC_IP_R2	2	556.1796875	2	555.769311	1109.52407	-0.80222	-0.00044585	-0.29946	-0.00016643	-1.1017	-0.00061228	555.7692171761017	31.333	1.6293	32.051	31.669	33.298	0.71857					58	31	4	0	0	0	0.011357	1	10957	10957		125.53	60.294	1	11800000			60803	9093	44336	44686	59246	59246					-0.02631178727074257
VTEIMSMGY	9	2 Oxidation (M)	_VTEIM(Oxidation (M))SM(Oxidation (M))GY_		VTEIM(1)SM(1)GY		VTEIM(89)SM(89)GY	0	0	2		ENSG00000119318|ENST00000358015|RAD23B;nc|ENSG00000119318|P54727-2|RAD23B	ENSG00000119318|ENST00000358015|RAD23B	ENSG00000119318|ENST00000358015|RAD23B	MULTI-MSMS	A375_MHC_IP_R1	1	532.12744140625	2	531.727743	1061.44093	-0.47218	-0.00025107	0.1641	8.7258E-05	-0.30808	-0.00016381	531.7278572137365	42.461	0.75907	42.461	42.132	42.891	0					24	14	2	0	0	0	0.01574	2	14708	14708;14741		88.904	42.883	1	5026200			60804	3581	44337	44687	59247;59248	59247		182;183			-0.08732954770925971
VTEIMSMGY	9	Oxidation (M)	_VTEIMSM(Oxidation (M))GY_		VTEIM(0.01)SM(0.99)GY		VTEIM(-20)SM(20)GY	0	0	1		ENSG00000119318|ENST00000358015|RAD23B;nc|ENSG00000119318|P54727-2|RAD23B	ENSG00000119318|ENST00000358015|RAD23B	ENSG00000119318|ENST00000358015|RAD23B	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1626586914062	2	523.730286	1045.44602	-0.40889	-0.00021415	-1.3578	-0.00071112	-1.7667	-0.00092527	523.7298552862455	62.235	0.40855	62.235	61.943	62.351	0					10	7	2	0	0	0	0.16229	1	22453	22453		48.346	26.599	2	1707300			60805	3581	44337	44688	59249	59249		182;183			-0.0748865090831714
VTEINYEQP	9	Unmodified	_VTEINYEQP_					0	0	0			REV__ENSG00000145808|ENST00000274487|ADAMTS19	REV__ENSG00000145808|ENST00000274487|ADAMTS19	MULTI-MSMS	A375_MHC_IP_R2	2	547.16357421875	2	546.764029	1091.5135	-0.8124	-0.00044419	0.44522	0.00024343	-0.36718	-0.00020076	546.7640460311095	31.569	0.30669	32.299	32.139	32.445	0.72981					10	5	2	0	0	0	0.070818	2	11193	11147;11193		56.177	3.9087	1	2593900	+		60806	19493	44338	44689	59250;59251	59251					-0.02859161381525155
VTEINYEQP	9	Unmodified	_VTEINYEQP_					0	0	0			REV__ENSG00000145808|ENST00000274487|ADAMTS19	REV__ENSG00000145808|ENST00000274487|ADAMTS19	MULTI-MATCH	A375_MHC_IP_R1	1		2	546.764029	1091.5135	-0.6618	-0.00036185	0.26412	0.00014441	-0.39768	-0.00021744	546.7641555039702	32.234	0.3078	32.234	32.075	32.383	0	-0.03251	-6.9635E-05	NaN	56.177	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2299300	+		60807	19493	44338	44689							-0.02859161381525155
VTEINYEQP	9	Unmodified	_VTEINYEQP_					0	0	0			REV__ENSG00000145808|ENST00000274487|ADAMTS19	REV__ENSG00000145808|ENST00000274487|ADAMTS19	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	546.764029	1091.5135	-0.8124	-0.00044419	0.44522	0.00024343	-0.36718	-0.00020076	546.7640460311095	31.569	0.30669	32.299	32.139	32.445	0.72981	0.03251	0.00012841	NaN	56.177	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2593900	+		60808	19493	44338	44689							-0.02859161381525155
VTEITDDLHFY	11	Unmodified	_VTEITDDLHFY_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-SECPEP	A375_MHC_IP_R1	1	677.2213745117188	2	676.822075	1351.6296	-0.76782	-0.00051968	0.65274	0.00044179	-0.11508	-7.7888E-05	677.3239694486336	95.043	0.35757	95.043	94.802	95.16	0					14	6	3	0	0	0	0.041688	1	34922	34922		75.761	39.634	1	2296900			60809	9124	44339	44690	59252	59252					-0.03215262601474933
VTEITDDLHFY	11	Unmodified	_VTEITDDLHFY_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	A375_MHC_IP_R2	2	676.69677734375	2	676.822075	1351.6296	-0.46036	-0.00031158	-0.66117	-0.00044749	-1.1215	-0.00075908	677.3230686257621	94.359	0.55758	95.104	94.869	95.426	0.74473					14	10	2	0	0	0	0.33856	1	35819	35819		43.772	23.358	1	2497200			60810	9124	44339	44690	59253	59253					-0.03215262601474933
VTEITRYSFYT	11	Unmodified	_VTEITRYSFYT_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	MULTI-MSMS	A375_MHC_IP_R1	1	690.755859375	2	690.345717	1378.67688	-0.6139	-0.00042381	0.40493	0.00027954	-0.20897	-0.00014426	690.345746900134	57.614	0.6605	57.614	57.313	57.974	0					30	12	4	0	0	0	0.41028	1	20556	20556		38.176	8.335	1	6164700			60811	7014	44340	44691	59254	59254					0.002690166695174412
VTEKAVLP	8	Unmodified	_VTEKAVLP_					0	0	0			REV__nc|ENSG00000168803|Q6DHV7-3|ADAL	REV__nc|ENSG00000168803|Q6DHV7-3|ADAL	MULTI-SECPEP	A375_MHC_IP_R1	1	429.1605529785156	2	428.760561	855.506569	0.018616	7.9817E-06	-0.074248	-3.1835E-05	-0.055632	-2.3853E-05	428.7605618097422	44.259	0.46141	44.259	43.959	44.42	0					14	8	2	0	0	0	0.64713	1	15438	15438		22.736	0	1	2722300	+		60812	20887	44341	44692	59255	59255					0.07303570528563341
VTEKAWNYY	9	Unmodified	_VTEKAWNYY_					0	0	0		nc|ENSG00000154217|Q9UKF7-2|PITPNC1;ENSG00000154217|ENST00000581322|PITPNC1;ENST00000581923.5_1_17:65529052-65574345:+|nuORF	nc|ENSG00000154217|Q9UKF7-2|PITPNC1	nc|ENSG00000154217|Q9UKF7-2|PITPNC1	MULTI-MSMS	A375_MHC_IP_R1	1	587.6817626953125	2	587.282389	1172.55022	-0.21102	-0.00012393	0.26799	0.00015738	0.056968	3.3456E-05	587.2824293530213	51.078	0.50794	51.078	50.814	51.322	0					23	9	3	0	0	0	0.0092511	1	18097	18097		103.42	49.587	1	8226900			60813	6069	44342	44693	59256	59256					-0.029148647649662962
VTEKAWNYY	9	Unmodified	_VTEKAWNYY_					0	0	0		nc|ENSG00000154217|Q9UKF7-2|PITPNC1;ENSG00000154217|ENST00000581322|PITPNC1;ENST00000581923.5_1_17:65529052-65574345:+|nuORF	nc|ENSG00000154217|Q9UKF7-2|PITPNC1	nc|ENSG00000154217|Q9UKF7-2|PITPNC1	MULTI-MSMS	A375_MHC_IP_R2	2	587.6824340820312	2	587.282389	1172.55022	-0.72668	-0.00042677	0.42032	0.00024685	-0.30636	-0.00017992	587.2824823360168	50.456	0.76083	51.21	50.854	51.615	0.75406					31	14	3	0	0	0	0.020087	2	18949	18949;18975		83.429	43.886	1	5388700			60814	6069	44342	44693	59257;59258	59257					-0.029148647649662962
VTEKDLLLY	9	Unmodified	_VTEKDLLLY_					0	0	0		ENSG00000168807|ENST00000336278|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	MULTI-MSMS	A375_MHC_IP_R1	1	547.2429809570312	2	547.310615	1092.60668	-0.36143	-0.00019782	0.049487	2.7085E-05	-0.31195	-0.00017073	547.3106183683394	78.833	2.8497	78.833	78.403	81.253	0					135	55	5	0	0	0	0.020087	3	28827	28827;28904;29135		83.429	11.506	1	241310000			60815	7347	44343	44694	59259;59260;59261	59259					0.06407763071729278
VTEKKYILY	9	Unmodified	_VTEKKYILY_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-MSMS	A375_MHC_IP_R1	1	386.6250915527344	3	386.225264	1155.65396	-0.10925	-4.2193E-05	-0.28092	-0.0001085	-0.39016	-0.00015069	386.22500479593884	41.541	0.81721	41.541	41.215	42.032	0					34	15	3	0	0	0	0.35164	1	14355	14355		27.088	4.3134	1	11405000			60816	9912	44344	44695	59262	59262					0.08236042342718974
VTEKKYILY	9	Unmodified	_VTEKKYILY_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-SECPEP	A375_MHC_IP_R1	1	579.2337036132812	2	578.834257	1155.65396	-0.56174	-0.00032516	-0.011977	-6.9329E-06	-0.57372	-0.00033209	578.8341884120335	41.546	0.40868	41.546	41.317	41.725	0					15	7	3	0	0	0	0.11849	1	14356	14356		70.332	20.778	1	6867900			60817	9912	44344	44695	59263	59263					0.08236042342718974
VTEKKYILY	9	Unmodified	_VTEKKYILY_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-MSMS	A375_MHC_IP_R2	2	386.6250915527344	3	386.225264	1155.65396	-0.3015	-0.00011645	0.094856	3.6636E-05	-0.20665	-7.9812E-05	386.22513537282924	40.74	0.81379	41.515	41.183	41.997	0.77451					27	15	3	0	0	0	0.52197	1	15077	15077		18.721	5.1064	1	14131000			60818	9912	44344	44695	59264	59264					0.08236042342718974
VTEKKYILY	9	Unmodified	_VTEKKYILY_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-SECPEP	A375_MHC_IP_R2	2	579.2343139648438	2	578.834257	1155.65396	-0.39968	-0.00023135	0.13158	7.6164E-05	-0.2681	-0.00015518	578.83423637484	40.74	0.45823	41.515	41.234	41.692	0.77451					18	8	3	0	0	0	0.16595	1	15083	15083		61.602	12.048	1	6517100			60819	9912	44344	44695	59265	59265					0.08236042342718974
VTEKNIISY	9	Unmodified	_VTEKNIISY_					0	0	0		nc|ENSG00000181214|Q6IF36|OR8G2P;ENSG00000255298|ENST00000641992|OR8G5;ENSG00000197849|ENST00000641972|OR8G1;nc|ENSG00000255298|Q8NG78|OR8G5	nc|ENSG00000181214|Q6IF36|OR8G2P	nc|ENSG00000181214|Q6IF36|OR8G2P	MULTI-SECPEP	A375_MHC_IP_R1	1	534.1925659179688	2	533.792589	1065.57063	-0.61928	-0.00033057	0.80994	0.00043234	0.19066	0.00010178	534.2943029303594	46.147	0.50373	46.147	45.941	46.444	0					19	9	3	0	0	0	0.47674	1	16183	16183		13.615	0	1	2366600			60820	9199	44345	44696	59266	59266					0.04046305894848956
VTELHVISY	9	Unmodified	_VTELHVISY_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000560083.1_1_17:78360201-78362555:+|nuORF;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	A375_MHC_IP_R1	1	531.1873779296875	2	530.787307	1059.56006	-0.65014	-0.00034509	0.4227	0.00022436	-0.22744	-0.00012072	530.7875217545169	64.725	1.1208	64.725	64.495	65.616	0					45	21	3	0	0	0	0.011358	1	23389	23389		96.285	63.979	1	50963000			60821	7831	44346	44697	59267	59267					0.032663232404502196
VTELHVISY	9	Unmodified	_VTELHVISY_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000560083.1_1_17:78360201-78362555:+|nuORF;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	A375_MHC_IP_R2	2	531.1873168945312	2	530.787307	1059.56006	-0.55871	-0.00029656	-0.028472	-1.5113E-05	-0.58718	-0.00031167	530.7873297445693	63.984	0.9155	64.724	64.394	65.31	0.74022					40	17	3	0	0	0	0.037185	1	24195	24195		96.285	56.327	1	49940000			60822	7831	44346	44697	59268	59268					0.032663232404502196
VTELTLHLY	9	Unmodified	_VTELTLHLY_					0	0	0			REV__ENST00000440748.1_1_7:37415149-37415623:+|nuORF	REV__ENST00000440748.1_1_7:37415149-37415623:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	545.1432495117188	2	544.802957	1087.59136	-0.40042	-0.00021815	0.016633	9.0615E-06	-0.38379	-0.00020909	544.8025220500875	37.39	0.56122	37.39	37.045	37.607	0					17	10	2	0	0	0	0.73363	1	12545	12545		10.824	4.6181	1	1069800	+		60823	24799	44347	44698	59269	59269					0.05106896274537576
VTENKYIEV	9	Unmodified	_VTENKYIEV_					0	0	0		nc|ENSG00000134909|A7KAX9-2|ARHGAP32;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;ENST00000534357.1_1_11:128850446-128851410:-|nuORF	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-SECPEP	A375_MHC_IP_R1	1	548.1895141601562	2	547.790047	1093.56554	-0.54862	-0.00030053	-0.59794	-0.00032755	-1.1466	-0.00062808	547.7894694712203	55.105	0.86312	55.105	54.619	55.482	0					30	16	3	0	0	0	0.11711	1	19721	19721		69.105	0	1	2734000			60824	4625	44348	44699	59270	59270					0.022500020322468117
VTENKYIEVGE	11	Unmodified	_VTENKYIEVGE_					0	0	0		nc|ENSG00000134909|A7KAX9-2|ARHGAP32;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;ENST00000534357.1_1_11:128850446-128851410:-|nuORF	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-MSMS	A375_MHC_IP_R1	1	641.22216796875	2	640.822075	1279.6296	-0.33196	-0.00021273	0.23516	0.00015069	-0.096805	-6.2035E-05	640.8222372401888	108.59	0.60815	108.59	108.31	108.92	0					20	11	3	0	0	0	0.66366	1	39856	39856		18.373	2.224	1	3179300			60825	4625	44349	44700	59271	59271					0.0009673739853042207
VTENKYIEVGE	11	Unmodified	_VTENKYIEVGE_					0	0	0		nc|ENSG00000134909|A7KAX9-2|ARHGAP32;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;ENST00000534357.1_1_11:128850446-128851410:-|nuORF	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-SECPEP	A375_MHC_IP_R2	2	641.2221069335938	2	640.822075	1279.6296	-0.76579	-0.00049074	0.42108	0.00026984	-0.34471	-0.0002209	640.8220437752902	107.79	0.61299	108.55	108.2	108.81	0.75436					21	11	3	0	0	0	0.75408	1	40753	40753		27.629	10.516	1	2057600			60826	4625	44349	44700	59272	59272					0.0009673739853042207
VTENVVNLY	9	Unmodified	_VTENVVNLY_					0	0	0		nc|ENSG00000259207|P05106-2|ITGB3;nc|ENSG00000259207|P05106-3|ITGB3;ENSG00000259207|ENST00000559488|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	MULTI-MSMS	A375_MHC_IP_R1	1	1050.22021484375	1	1050.5466	1049.53933	0.0051837	5.4457E-06	-0.34151	-0.00035878	-0.33633	-0.00035333	1050.546191377151	80.445	0.75993	80.445	80.086	80.846	0					40	14	4	0	0	0	0.0078915	1	29356	29356		168.66	64.91	1	27337000			60827	9926	44350	44701	59273	59273					0.016537328607682866
VTENVVNLY	9	Unmodified	_VTENVVNLY_					0	0	0		nc|ENSG00000259207|P05106-2|ITGB3;nc|ENSG00000259207|P05106-3|ITGB3;ENSG00000259207|ENST00000559488|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	MULTI-SECPEP	A375_MHC_IP_R1	1	526.2949829101562	2	525.776939	1049.53933	-0.6151	-0.00032341	-0.33242	-0.00017478	-0.94752	-0.00049819	525.7768362706718	80.466	2.1402	80.466	79.011	81.151	0					86	41	5	0	0	0	0.0090265	1	29341	29341		144.35	59.078	1	51970000			60828	9926	44350	44701	59274	59274					0.016537328607682866
VTEPRALFI	9	Unmodified	_VTEPRALFI_					0	0	0		ENST00000422703.5_1_2:174072279-174136245:-|nuORF	ENST00000422703.5_1_2:174072279-174136245:-|nuORF	ENST00000422703.5_1_2:174072279-174136245:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	523.6871337890625	2	523.305667	1044.59678	-0.47358	-0.00024783	1.6554	0.00086626	1.1818	0.00061843	523.8080706789937	64.011	0.40562	64.751	64.496	64.902	0.74022					15	7	3	0	0	0	0.53748	1	24209	24209		30.637	11.38	1	2277200			60829	11749	44351	44702	59275	59275					0.07626619856978323
VTERAKLIF	9	Unmodified	_VTERAKLIF_					0	0	0		PMS2|p.S769F|2|0.28|ENSG00000122512|chr7:5977727-5977727|G/A|missense_variant	PMS2|p.S769F|2|0.28|ENSG00000122512|chr7:5977727-5977727|G/A|missense_variant	PMS2|p.S769F|2|0.28|ENSG00000122512|chr7:5977727-5977727|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	359.2895812988281	3	359.553603	1075.63898	-0.45433	-0.00016336	-0.27646	-9.9403E-05	-0.73079	-0.00026276	359.5534059182021	72.018	0.45583	72.752	72.465	72.921	0.73421					19	8	3	0	0	0	0.71341	1	27334	27334		5.7834	0	1	2620300			60830	15204	44352	44703	59276	59276					0.1041859526535518
VTERKLQFP	9	Unmodified	_VTERKLQFP_					0	0	0		ENST00000529689.5_1_11:82997014-82997215:-|nuORF	ENST00000529689.5_1_11:82997014-82997215:-|nuORF	ENST00000529689.5_1_11:82997014-82997215:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	373.6170654296875	3	373.216991	1116.62914	0.050687	1.8917E-05	0.026238	9.7926E-06	0.076925	2.871E-05	373.2169138130937	56.433	0.50966	57.184	57	57.51	0.75014					21	9	3	0	0	0	0.1915	1	21332	21332		38.615	3.5351	1	5349100			60831	13134	44353	44704	59277	59277					0.07549407259966756
VTERREKKY	9	Unmodified	_VTERREKKY_					0	0	0			REV__ENSG00000197081|ENST00000356956|IGF2R	REV__ENSG00000197081|ENST00000356956|IGF2R	MULTI-SECPEP	A375_MHC_IP_R2	2	604.7047729492188	2	604.840936	1207.66732	-0.30714	-0.00018577	-0.16087	-9.7302E-05	-0.46801	-0.00028307	605.342164605058	93.556	0.30382	94.301	94.058	94.362	0.74474					6	5	2	0	0	0	0.75466	1	35559	35559		7.9102	0	1	1816200	+		60832	22252	44354	44705	59278	59278					0.07179293174658596
VTERSEFW	8	Unmodified	_VTERSEFW_					0	0	0		nc|ENSG00000121236|Q9C030-3|TRIM6;nc|ENSG00000121236|Q9C030|TRIM6;ENSG00000121236|ENST00000380097|TRIM6;ENST00000481603.1_1_11:5626782-5632007:+|nuORF	nc|ENSG00000121236|Q9C030-3|TRIM6	nc|ENSG00000121236|Q9C030-3|TRIM6	MULTI-MSMS	A375_MHC_IP_R2	2	527.6532592773438	2	527.253631	1052.49271	-0.32036	-0.00016891	-0.72462	-0.00038206	-1.045	-0.00055097	527.2532722643491	47.567	0.66041	48.328	48.022	48.682	0.76127					19	12	2	0	0	0	0.7338	1	17831	17831		24.674	4.2203	1	3513800			60833	3712	44355	44706	59279	59279					-0.031437069705361864
VTETKGTGAP	10	Unmodified	_VTETKGTGAP_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14;REV__ENSG00000183914|ENST00000572933|DNAH2	REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	MSMS	A375_MHC_IP_R1	1	480.6920471191406	2	480.753464	959.492375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.71	1	63.71	63.21	64.21	0								0	0	0	0.14483	1	23039	23039		27.629	0	1		+		60834	21924;21788	44356	44707	59280	59280					0.011008733096218748
VTETKGTGAP	10	Unmodified	_VTETKGTGAP_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14;REV__ENSG00000183914|ENST00000572933|DNAH2	REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	MSMS	A375_MHC_IP_R1	1	480.6986083984375	2	480.753464	959.492375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.776	1	63.776	63.276	64.276	0								0	0	0	0.13064	1	23064	23064		34.402	0	1		+		60835	21924;21788	44356	44707	59281	59281					0.011008733096218748
VTETVHTSY	9	Unmodified	_VTETVHTSY_					0	0	0		ENSG00000189227|ENST00000342683|C15orf61	ENSG00000189227|ENST00000342683|C15orf61	ENSG00000189227|ENST00000342683|C15orf61	MULTI-SECPEP	A375_MHC_IP_R1	1	518.6965942382812	2	518.750921	1035.48729	-0.57358	-0.00029754	0.15936	8.2669E-05	-0.41422	-0.00021488	518.7510954517684	25.409	0.45961	25.409	25.255	25.714	0					14	8	2	0	0	0	0.65246	1	7415	7415		21.747	21.747	1	2975200			60836	8972	44357	44708	59282	59282					-0.029034305529876292
VTETVHTSY	9	Unmodified	_VTETVHTSY_					0	0	0		ENSG00000189227|ENST00000342683|C15orf61	ENSG00000189227|ENST00000342683|C15orf61	ENSG00000189227|ENST00000342683|C15orf61	MULTI-MATCH	A375_MHC_IP_R2	2		2	518.750921	1035.48729	-1.1114	-0.00057652	0.091365	4.7396E-05	-1.02	-0.00052912	518.7509885227319	24.932	0.30486	25.576	25.414	25.719	0.64368	0.083425	-3.5431E-05	NaN	39.957	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3762300			60837	8972	44357	44708							-0.029034305529876292
VTEVAHHYSAP	11	Unmodified	_VTEVAHHYSAP_					0	0	0			REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9	REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-SECPEP	A375_MHC_IP_R2	2	403.6271057128906	3	404.199889	1209.57784	-0.19191	-7.757E-05	2.4157	0.00097644	2.2238	0.00089887	404.20166138182935	33.24	0.51025	33.992	33.635	34.146	0.75225					16	9	2	0	0	0	0.99331	1	11815	11815		4.4062	1.9714	1	2230700	+		60838	16886	44358	44709	59283	59283					-0.018569615047226762
VTEVLLGR	8	Unmodified	_VTEVLLGR_					0	0	0		ENSG00000111670|ENST00000299314|GNPTAB	ENSG00000111670|ENST00000299314|GNPTAB	ENSG00000111670|ENST00000299314|GNPTAB	MSMS	A375_MHC_IP_R2	2	443.67938232421875	2	443.77146	885.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.878	1	66.616	66.116	67.116	0.73811								0	0	0	0.16876	1	24979	24979		12.532	0	1				60839	3012	44359	44710	59284	59284					0.08102375277155716
VTEWELNNI	9	Unmodified	_VTEWELNNI_					0	0	0			REV__ENSG00000171861|ENST00000304478|MRM3	REV__ENSG00000171861|ENST00000304478|MRM3	MULTI-SECPEP	A375_MHC_IP_R2	2	373.5890808105469	3	373.188989	1116.54514	0.54675	0.00020404	0.37028	0.00013819	0.91703	0.00034223	373.1890773553203	43.362	0.55748	44.134	43.775	44.333	0.7724					18	10	2	0	0	0	0.78348	1	16197	16197		0.96228	0	1	1558800	+		60840	21103	44360	44711	59285	59285					-0.00847168627569772
VTEWELNNI	9	Unmodified	_VTEWELNNI_					0	0	0			REV__ENSG00000171861|ENST00000304478|MRM3	REV__ENSG00000171861|ENST00000304478|MRM3	MULTI-MATCH	A375_MHC_IP_R1	1		3	373.188989	1116.54514	0.40645	0.00015168	0.77912	0.00029076	1.1856	0.00044244	373.1892230586664	44.096	0.40809	44.096	43.859	44.267	0	-0.019294	0.00012688	NaN	0.96228	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2104000	+		60841	21103	44360	44711							-0.00847168627569772
VTEYDPQPA	9	Unmodified	_VTEYDPQPA_					0	0	0		nc|ENSG00000106479|O60290-2|ZNF862;ENSG00000106479|ENST00000223210|ZNF862	nc|ENSG00000106479|O60290-2|ZNF862	nc|ENSG00000106479|O60290-2|ZNF862	MULTI-SECPEP	A375_MHC_IP_R2	2	510.4511413574219	2	510.237647	1018.46074	-1.0803	-0.0005512	-1.4596	-0.00074472	-2.5398	-0.0012959	510.23647020535503	56.48	0.35752	57.23	56.948	57.306	0.75014					15	6	3	0	0	0	0.69507	1	21270	21270		9.3831	0	1	1309500			60842	2694	44361	44712	59286	59286					-0.047751194443321765
VTFDEAEWLA	10	Unmodified	_VTFDEAEWLA_					0	0	0			REV__nc|ENSG00000114054|P05166-2|PCCB	REV__nc|ENSG00000114054|P05166-2|PCCB	MULTI-MSMS	A375_MHC_IP_R2	2	590.1715087890625	2	590.779679	1179.5448	-0.74728	-0.00044148	-0.047437	-2.8025E-05	-0.79472	-0.00046951	590.7795792601345	54.637	0.81465	55.388	55.118	55.933	0.75075					35	15	3	0	0	0	0.53946	1	20727	20727		25.399	10.151	1	7695800	+		60843	27182	44362	44713	59287	59287					-0.03778588347427103
VTFEDNSKYW	10	Unmodified	_VTFEDNSKYW_					0	0	0		ENSG00000119403|ENST00000373896|PHF19;nc|ENSG00000119403|Q5T6S3-3|PHF19;nc|ENSG00000119403|Q5T6S3-2|PHF19	ENSG00000119403|ENST00000373896|PHF19	ENSG00000119403|ENST00000373896|PHF19	MULTI-MSMS	A375_MHC_IP_R1	1	645.6973266601562	2	644.79586	1287.57717	-0.31098	-0.00020052	-0.2914	-0.00018789	-0.60238	-0.00038841	644.7955512578503	70.374	0.56308	70.374	70.135	70.698	0					22	10	3	0	0	0	0.42311	2	25544	25544;25619		32.786	21.145	1	2851700			60844	3591	44363	44714	59288;59289	59288					-0.0551180094441861
VTFEDNSKYW	10	Unmodified	_VTFEDNSKYW_					0	0	0		ENSG00000119403|ENST00000373896|PHF19;nc|ENSG00000119403|Q5T6S3-3|PHF19;nc|ENSG00000119403|Q5T6S3-2|PHF19	ENSG00000119403|ENST00000373896|PHF19	ENSG00000119403|ENST00000373896|PHF19	MULTI-MSMS	A375_MHC_IP_R2	2	644.7412719726562	2	644.79586	1287.57717	-0.61698	-0.00039783	0.23031	0.0001485	-0.38668	-0.00024933	644.7960388993052	69.855	0.50906	70.589	70.335	70.844	0.73421					19	9	3	0	0	0	0.45806	1	26520	26520		30.703	20.63	1	2984900			60845	3591	44363	44714	59290	59290					-0.0551180094441861
VTFENAGMY	9	Unmodified	_VTFENAGMY_					0	0	0		ENSG00000018236|ENST00000551295|CNTN1;nc|ENSG00000018236|Q12860-2|CNTN1;nc|ENSG00000018236|Q12860-3|CNTN1	ENSG00000018236|ENST00000551295|CNTN1	ENSG00000018236|ENST00000551295|CNTN1	MULTI-MSMS	A375_MHC_IP_R1	1	516.62890625	2	516.228768	1030.44298	-0.35138	-0.00018139	0.29007	0.00014974	-0.061319	-3.1655E-05	516.2288095963108	72.187	0.60738	72.187	71.917	72.524	0					26	11	3	0	0	0	0.25276	1	26235	26235		34.102	15.956	1	7276800			60846	1045	44364	44715	59291	59291					-0.07102157970825829
VTFENAGMY	9	Unmodified	_VTFENAGMY_					0	0	0		ENSG00000018236|ENST00000551295|CNTN1;nc|ENSG00000018236|Q12860-2|CNTN1;nc|ENSG00000018236|Q12860-3|CNTN1	ENSG00000018236|ENST00000551295|CNTN1	ENSG00000018236|ENST00000551295|CNTN1	MULTI-MSMS	A375_MHC_IP_R2	2	516.6284790039062	2	516.228768	1030.44298	-1.0722	-0.0005535	0.27927	0.00014417	-0.79292	-0.00040933	516.2288534516822	71.578	0.81002	72.312	72.111	72.921	0.73421					31	15	3	0	0	0	0.077132	1	27153	27153		54.774	9.0739	1	7803300			60847	1045	44364	44715	59292	59292					-0.07102157970825829
VTFEPRRY	8	Unmodified	_VTFEPRRY_					0	0	0		IGHMBP2|p.P812Lfs*19|1|0.86|ENSG00000132740|chr11:68936912-68936912|C/-|frameshift_variant;ENSG00000132740|ENST00000255078|IGHMBP2	IGHMBP2|p.P812Lfs*19|1|0.86|ENSG00000132740|chr11:68936912-68936912|C/-|frameshift_variant	IGHMBP2|p.P812Lfs*19|1|0.86|ENSG00000132740|chr11:68936912-68936912|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	356.9260559082031	3	356.525936	1066.55598	-0.44194	-0.00015756	0.74728	0.00026643	0.30534	0.00010886	356.526081796852	29.378	0.30382	29.378	29.149	29.453	0					7	5	2	0	0	0	0.74945	1	9223	9223		16.149	3.2765	1	6546400			60848	4445	44365	44716	59293	59293					0.025362785373772567
VTFFILLLLLV	11	Unmodified	_VTFFILLLLLV_					0	0	0			REV__nc|ENSG00000154265|Q8WWZ7-3|ABCA5	REV__nc|ENSG00000154265|Q8WWZ7-3|ABCA5	MSMS	A375_MHC_IP_R1	1	645.5953979492188	2	645.925418	1289.83628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.25	1	124.25	123.75	124.75	0								0	0	0	0.16334	1	46721	46721		1.3295	0	1		+		60849	19877	44366	44717	59294	59294					0.20295801755469256
VTFFLFYLL	9	Unmodified	_VTFFLFYLL_					0	0	0		NMUR2|p.S221F|1|0.52|ENSG00000132911|chr5:152404452-152404452|G/A|missense_variant	NMUR2|p.S221F|1|0.52|ENSG00000132911|chr5:152404452-152404452|G/A|missense_variant	NMUR2|p.S221F|1|0.52|ENSG00000132911|chr5:152404452-152404452|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	388.9330139160156	3	388.223083	1161.64742	0.32356	0.00012561	2.0143	0.00078201	2.3379	0.00090762	388.2239556782658	47.681	0.2521	47.681	47.567	47.819	0					6	4	2	0	0	0	0.75466	1	16835	16835		0.20686	0	1	1044600			60850	15010	44367	44718	59295	59295					0.07306149181999899
VTFGFFFFV	9	Unmodified	_VTFGFFFFV_					0	0	0		ENST00000503755.5_1_5:87502254-87524301:-|nuORF;nc|ENSG00000164180|Q8NDZ6-3|TMEM161B;ENST00000457388.1_1_10:37626656-37627235:+|nuORF;nc|ENSG00000164180|Q8NDZ6-2|TMEM161B;ENSG00000164180|ENST00000296595|TMEM161B	ENST00000503755.5_1_5:87502254-87524301:-|nuORF	ENST00000503755.5_1_5:87502254-87524301:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	371.3118591308594	3	370.860145	1109.5586	0.14006	5.1943E-05	1.4676	0.00054428	1.6077	0.00059622	370.86062394589567	35.192	0.40469	35.955	35.778	36.183	0.76338					11	7	2	0	0	0	0.80005	1	12742	12742		0	0	1	1090000			60851	6795	44368	44719	59296	59296					0.008207339423279336
VTFGFYLHNA	10	Unmodified	_VTFGFYLHNA_					0	0	0		TENM3|p.H2416Y|1|0.38|ENSG00000218336|chr4:182796669-182796669|C/T|missense_variant	TENM3|p.H2416Y|1|0.38|ENSG00000218336|chr4:182796669-182796669|C/T|missense_variant	TENM3|p.H2416Y|1|0.38|ENSG00000218336|chr4:182796669-182796669|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	584.66162109375	2	584.792924	1167.57129	-0.39747	-0.00023244	2.1746	0.0012717	1.7772	0.0010393	585.2949813370636	79.223	0.80998	79.968	79.54	80.35	0.74473					58	15	6	0	0	0	0.8125	1	29995	29995		24.021	14.637	1	10793000			60852	29324	44369	44720	59297	59297					-0.005788546654230231
VTFGTPER	8	Unmodified	_VTFGTPER_					0	0	0		nc|ENSG00000110693|P35712-4|SOX6;nc|ENSG00000110693|P35712-2|SOX6;nc|ENSG00000110693|P35712-3|SOX6;ENSG00000110693|ENST00000683767|SOX6;ENST00000533658.5_1_11:16339950-16362794:-|nuORF	nc|ENSG00000110693|P35712-4|SOX6	nc|ENSG00000110693|P35712-4|SOX6	MULTI-SECPEP	A375_MHC_IP_R1	1	454.13751220703125	2	453.737617	905.460681	-0.15401	-6.988E-05	0.37512	0.0001702	0.22111	0.00010032	453.7376287316021	72.955	0.45618	72.955	72.728	73.184	0					11	8	2	0	0	0	0.95423	1	26574	26574		7.9102	0	1	1129200			60853	2938	44370	44721	59298	59298					0.004169253463260247
VTFGVITSIII	11	Unmodified	_VTFGVITSIII_					0	0	0		ENSG00000163823|ENST00000296140|CCR1	ENSG00000163823|ENST00000296140|CCR1	ENSG00000163823|ENST00000296140|CCR1	MSMS	A375_MHC_IP_R2	2	388.29248046875	3	388.240914	1161.70091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.568	1	48.329	47.829	48.829	0.76128								0	0	0	0.16232	1	17840	17840		6.6235	0	1				60854	6730	44371	44722	59299	59299					0.12652901893852686
VTFGWLMVSP	10	Unmodified	_VTFGWLMVSP_					0	0	0			REV__ENSG00000165548|ENST00000298351|TMEM63C	REV__ENSG00000165548|ENST00000298351|TMEM63C	MULTI-SECPEP	A375_MHC_IP_R1	1	568.6723022460938	2	568.794078	1135.5736	-0.062597	-3.5605E-05	2.1681	0.0012332	2.1055	0.0011976	568.7958441106824	44.443	0.81781	44.443	44.01	44.827	0					20	15	2	0	0	0	0.8125	1	15632	15632		8.7454	0	1	2332600	+		60855	20595	44372	44723	59300	59300					0.011238577480298773
VTFHSSNKMT	10	Unmodified	_VTFHSSNKMT_					0	0	0		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MULTI-MSMS	A375_MHC_IP_R2	2	577.7081298828125	2	576.279323	1150.54409	-0.35077	-0.00020214	-0.58344	-0.00033622	-0.9342	-0.00053836	576.7811499823098	54.786	0.8647	55.537	55.068	55.933	0.75075					58	16	5	0	0	0	0.70496	1	20551	20551		10.074	0.6908	1	14207000			60856	7896	44373	44724	59301	59301					-0.0251570626812736
VTFKSILF	8	Unmodified	_VTFKSILF_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000550479.1_1_12:104332030-104335334:+|nuORF;ENST00000415545.2_1_1:92108345-92109332:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-SECPEP	A375_MHC_IP_R1	1	478.1866760253906	2	477.786579	953.558604	-0.44495	-0.00021259	0.49796	0.00023792	0.053011	2.5328E-05	477.7866940695447	102.99	0.66113	102.99	102.76	103.42	0					18	12	2	0	0	0	0.42778	1	37849	37849		60.074	3.8969	1	2464800			60857	7095	44374	44725	59302	59302					0.07996733942343326
VTFKSILF	8	Unmodified	_VTFKSILF_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000550479.1_1_12:104332030-104335334:+|nuORF;ENST00000415545.2_1_1:92108345-92109332:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-SECPEP	A375_MHC_IP_R2	2	478.186279296875	2	477.786579	953.558604	-0.5029	-0.00024028	0.24536	0.00011723	-0.25754	-0.00012305	477.7864632803475	101.93	0.50913	102.69	102.46	102.97	0.76428					15	9	2	0	0	0	0.33704	1	38651	38651		75.761	13.188	1	2985800			60858	7095	44374	44725	59303	59303					0.07996733942343326
VTFLEASR	8	Unmodified	_VTFLEASR_					0	0	0		ENSG00000167578|ENST00000357052|RAB4B;nc|ENSG00000167578|P61018-2|RAB4B;ENST00000597476.5_1_19:41285769-41292865:+|nuORF;ENSG00000168118|ENST00000366690|RAB4A	ENSG00000167578|ENST00000357052|RAB4B	ENSG00000167578|ENST00000357052|RAB4B	MULTI-SECPEP	A375_MHC_IP_R1	1	461.6432189941406	2	461.753267	921.491981	-0.16073	-7.4219E-05	0.62292	0.00028763	0.46218	0.00021342	461.75370535114695	43.604	0.25429	43.604	43.4	43.655	0					6	4	2	0	0	0	0.9187	1	15108	15108		13.906	3.0821	1	619190			60859	7197	44375	44726	59304	59304					0.028094983804294316
VTFLINDGV	9	Unmodified	_VTFLINDGV_					0	0	0		tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1	tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1	tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	490.19342041015625	2	489.26875	976.522947	-0.5198	-0.00025432	-0.25185	-0.00012322	-0.77165	-0.00037754	489.26859338388596	70.389	1.9763	71.124	70.642	72.618	0.73421					81	38	5	0	0	0	0.64808	1	26583	26583		11.64	0	1	105030000			60860	29735	44376	44727	59305	59305					0.03374651694662134
VTFLLPAGW	9	Unmodified	_VTFLLPAGW_					0	0	0		ENSG00000176340|ENST00000314133|COX8A	ENSG00000176340|ENST00000314133|COX8A	ENSG00000176340|ENST00000314133|COX8A	MULTI-MSMS	A375_MHC_IP_R1	1	502.6835632324219	2	502.284203	1002.55385	-0.62185	-0.00031235	-1.4565	-0.0007316	-2.0784	-0.0010439	502.28384158631826	132.46	0.35551	132.46	132.23	132.59	0					13	6	4	0	0	0	0.042197	1	51101	51101		67.344	41.945	1	11935000			60861	8014	44377	44728	59306	59306					0.052678497995543694
VTFLLPAGW	9	Unmodified	_VTFLLPAGW_					0	0	0		ENSG00000176340|ENST00000314133|COX8A	ENSG00000176340|ENST00000314133|COX8A	ENSG00000176340|ENST00000314133|COX8A	MULTI-MSMS	A375_MHC_IP_R2	2	1004.8858032226562	1	1003.56113	1002.55385	0.057051	5.7254E-05	-0.58402	-0.0005861	-0.52697	-0.00052885	1003.560833551813	132.29	0.30925	132.48	132.35	132.66	0.18953					13	5	4	0	0	0	0.0036473	2	52036	52011;52036		137.59	84.01	1	33561000			60862	8014	44377	44728	59307;59308	59308					0.052678497995543694
VTFLLPAGW	9	Unmodified	_VTFLLPAGW_					0	0	0		ENSG00000176340|ENST00000314133|COX8A	ENSG00000176340|ENST00000314133|COX8A	ENSG00000176340|ENST00000314133|COX8A	MULTI-MSMS	A375_MHC_IP_R2	2	502.68389892578125	2	502.284203	1002.55385	-0.59091	-0.00029681	-0.78033	-0.00039195	-1.3712	-0.00068875	502.2840904618878	132.29	0.46245	132.48	132.35	132.82	0.18953					19	8	5	0	0	0	0.0036473	1	52047	52047		137.59	90.664	1	12184000			60863	8014	44377	44728	59309	59309					0.052678497995543694
VTFLLPAGW	9	Unmodified	_VTFLLPAGW_					0	0	0		ENSG00000176340|ENST00000314133|COX8A	ENSG00000176340|ENST00000314133|COX8A	ENSG00000176340|ENST00000314133|COX8A	MULTI-MATCH	A375_MHC_IP_R1	1		1	1003.56113	1002.55385	-0.044741	-4.4901E-05	-0.74305	-0.0007457	-0.78779	-0.0007906	1003.5605339459482	132.46	0.35641	132.46	132.33	132.69	0	-0.010378	-5.6355E-05	NaN	137.59	16	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34139000			60864	8014	44377	44728							0.052678497995543694
VTFMGFPIIM	10	Unmodified	_VTFMGFPIIM_					0	0	0		nc|ENSG00000150967|Q9NP78-3|ABCB9;ENST00000538895.5_1_12:123424612-123444782:-|nuORF;nc|ENSG00000150967|Q9NP78-6|ABCB9;nc|ENSG00000150967|Q9NP78-5|ABCB9;nc|ENSG00000150967|Q9NP78-7|ABCB9;nc|ENSG00000150967|Q9NP78-2|ABCB9;ENSG00000150967|ENST00000280560|ABCB9;ENST00000537276.5_1_12:123416657-123444319:-|nuORF	nc|ENSG00000150967|Q9NP78-3|ABCB9	nc|ENSG00000150967|Q9NP78-3|ABCB9	MULTI-SECPEP	A375_MHC_IP_R2	2	385.13763427734375	3	385.869546	1154.58681	-0.39095	-0.00015085	0.46935	0.00018111	0.078403	3.0253E-05	385.86971000345085	51.715	0.40718	52.467	52.27	52.677	0.75225					12	7	2	0	0	0	0.94707	1	19532	19532		0.56317	0.32733	1	1939300			60865	5871	44378	44729	59310	59310					0.0156997253575355
VTFNISREA	9	Unmodified	_VTFNISREA_					0	0	0		NCOA6|p.P101S|1|0.11|ENSG00000198646|chr20:34776383-34776383|G/A|missense_variant	NCOA6|p.P101S|1|0.11|ENSG00000198646|chr20:34776383-34776383|G/A|missense_variant	NCOA6|p.P101S|1|0.11|ENSG00000198646|chr20:34776383-34776383|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	518.6405029296875	2	518.774731	1035.53491	-0.59164	-0.00030693	0.27893	0.0001447	-0.31272	-0.00016223	518.7747743979103	31.338	0.45562	31.338	30.959	31.414	0					12	8	2	0	0	0	0.63327	1	10025	10025		13.042	7.3106	1	1881900			60866	14985	44379	44730	59311	59311					0.018562684378593985
VTFNKDEN	8	Unmodified	_VTFNKDEN_					0	0	0			REV__ENST00000305138.8_2_5:68666779-68666836:+|nuORF	REV__ENST00000305138.8_2_5:68666779-68666836:+|nuORF	MSMS	A375_MHC_IP_R1	1	483.6595153808594	2	483.729989	965.445425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.468	1	78.468	77.968	78.968	0								0	0	0	0.16876	1	28635	28635		15.847	1.2655	1		+		60867	23459	44380	44731	59312	59312					-0.038679862415278876
VTFPDIIRNY	10	Unmodified	_VTFPDIIRNY_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	A375_MHC_IP_R1	1	619.7317504882812	2	619.332413	1236.65027	-0.336	-0.0002081	0.10025	6.2086E-05	-0.23575	-0.00014601	619.3324045543142	101.28	0.70853	101.28	100.89	101.6	0					29	13	3	0	0	0	0.17879	1	37220	37220		51.415	24.192	1	5393500			60868	3306	44381	44732	59313	59313					0.04141372568847146
VTFPDIIRNY	10	Unmodified	_VTFPDIIRNY_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-SECPEP	A375_MHC_IP_R2	2	619.7321166992188	2	619.332413	1236.65027	-0.5125	-0.00031741	0.46741	0.00028948	-0.04509	-2.7926E-05	619.3325498585813	100.53	0.61417	101.29	100.98	101.6	0.76278					29	11	3	0	0	0	0.10905	1	38097	38097		59.052	21.978	1	6599800			60869	3306	44381	44732	59314	59314					0.04141372568847146
VTFPEFLRY	9	Unmodified	_VTFPEFLRY_					0	0	0		ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	MULTI-SECPEP	A375_MHC_IP_R1	1	586.6981201171875	2	586.310949	1170.60735	-0.089446	-5.2443E-05	0.019731	1.1569E-05	-0.069715	-4.0874E-05	586.3113887580103	110.13	0.55869	110.13	109.78	110.34	0					15	10	2	0	0	0	0.59098	1	40429	40429		27.629	4.4804	1	1145800			60870	7382	44382	44733	59315	59315					0.02886602511421188
VTFPIPDLQKY	11	Unmodified	_VTFPIPDLQKY_					0	0	0		ENSG00000119912|ENST00000265986|IDE;ENST00000478361.6_1_10:94240585-94297282:-|nuORF	ENSG00000119912|ENST00000265986|IDE	ENSG00000119912|ENST00000265986|IDE	MULTI-SECPEP	A375_MHC_IP_R1	1	661.2628173828125	2	660.863546	1319.71254	-0.29894	-0.00019756	0.056518	3.735E-05	-0.24242	-0.00016021	660.863626636469	107.03	0.66412	107.03	106.62	107.29	0					24	12	3	0	0	0	0.31903	1	39237	39237		51.488	25.467	1	2865500			60871	3633	44383	44734	59316	59316					0.06547098917167204
VTFPIPDLQKY	11	Unmodified	_VTFPIPDLQKY_					0	0	0		ENSG00000119912|ENST00000265986|IDE;ENST00000478361.6_1_10:94240585-94297282:-|nuORF	ENSG00000119912|ENST00000265986|IDE	ENSG00000119912|ENST00000265986|IDE	MULTI-MSMS	A375_MHC_IP_R2	2	661.2631225585938	2	660.863546	1319.71254	-0.91697	-0.00060599	-0.12079	-7.9826E-05	-1.0378	-0.00068582	660.8635028498674	106.2	0.66243	106.96	106.58	107.24	0.75977					17	12	2	0	0	0	0.37785	2	40154	40102;40154		40.725	20.144	1	2703500			60872	3633	44383	44734	59317;59318	59318					0.06547098917167204
VTFPSDLMCV	10	Unmodified	_VTFPSDLMCV_					0	0	0		nc|ENSG00000169035|P49862-2|KLK7;ENSG00000169035|ENST00000595820|KLK7;ENST00000304045.6_1_19:51480794-51487328:-|nuORF	nc|ENSG00000169035|P49862-2|KLK7	nc|ENSG00000169035|P49862-2|KLK7	MULTI-SECPEP	A375_MHC_IP_R1	1	556.6609497070312	2	556.261753	1110.50895	-0.37446	-0.0002083	-0.57219	-0.00031829	-0.94665	-0.00052659	556.2615868746926	35.772	0.96631	35.772	35.218	36.184	0					31	18	2	0	0	0	0.87163	1	12033	12033		13.906	3.8321	1	2531600			60873	7373	44384	44735	59319	59319					-0.0418808512031319
VTFPSDLMCV	10	Unmodified	_VTFPSDLMCV_					0	0	0		nc|ENSG00000169035|P49862-2|KLK7;ENSG00000169035|ENST00000595820|KLK7;ENST00000304045.6_1_19:51480794-51487328:-|nuORF	nc|ENSG00000169035|P49862-2|KLK7	nc|ENSG00000169035|P49862-2|KLK7	MULTI-MATCH	A375_MHC_IP_R2	2		2	556.261753	1110.50895	-0.99148	-0.00055152	-0.25177	-0.00014005	-1.2433	-0.00069158	556.2618192864014	35.072	1.0104	35.836	35.273	36.283	0.76338	0.032014	0.00017282	NaN	13.906	44	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2461900			60874	7373	44384	44735							-0.0418808512031319
VTFQEDLHF	9	Unmodified	_VTFQEDLHF_					0	0	0			REV__nc|ENSG00000167711|P08697-2|SERPINF2	REV__nc|ENSG00000167711|P08697-2|SERPINF2	MULTI-SECPEP	A375_MHC_IP_R2	2	567.6751098632812	2	568.274564	1134.53457	-0.55917	-0.00031776	-0.13489	-7.6657E-05	-0.69406	-0.00039442	568.2746418758652	36.338	0.66299	37.109	36.85	37.513	0.7709					20	12	2	0	0	0	0.58271	1	13174	13174		14.838	0	1	3596000	+	+	60875	15863	44385	44736	59320	59320					-0.0273115128200061
VTFQRCRL	8	Unmodified	_VTFQRCRL_					0	0	0			REV__ENST00000472061.1_1_7:99754715-99755074:-|nuORF	REV__ENST00000472061.1_1_7:99754715-99755074:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	511.98858642578125	2	511.781836	1021.54912	-0.40239	-0.00020593	-3.3179	-0.0016981	-3.7203	-0.001904	512.2825306220699	39.324	0.35452	39.324	39.136	39.491	0					10	6	2	0	0	0	0.92636	1	13380	13380		11.64	0	1	1588700	+		60876	19551	44386	44737	59321	59321					0.03920642385151041
VTFRPFRGGKR	11	Unmodified	_VTFRPFRGGKR_					0	0	0		ENST00000542550.5_2_12:30906344-30907684:-|nuORF	ENST00000542550.5_2_12:30906344-30907684:-|nuORF	ENST00000542550.5_2_12:30906344-30907684:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	660.5010986328125	2	660.886013	1319.75747	-0.6966	-0.00046037	-0.5801	-0.00038338	-1.2767	-0.00084375	660.8856170191483	52.877	0.55698	52.877	52.592	53.148	0					34	10	4	0	0	0	0.99018	1	18786	18786		4.5289	0	1	20565000			60877	13303	44387	44738	59322	59322					0.11038387293729102
VTFRQRLF	8	Unmodified	_VTFRQRLF_					0	0	0			REV__ENSG00000150783|ENST00000280358|TEX12	REV__ENSG00000150783|ENST00000280358|TEX12	MULTI-SECPEP	A375_MHC_IP_R1	1	534.2107543945312	2	533.811451	1065.60835	-0.63577	-0.00033938	-0.83793	-0.0004473	-1.4737	-0.00078668	533.8109713765119	59.609	0.40591	59.609	59.397	59.803	0					10	7	2	0	0	0	0.972	1	21483	21483		2.0598	0	1	1231700	+		60878	19729	44388	44739	59323	59323					0.07816861670971775
VTFSHWLY	8	Unmodified	_VTFSHWLY_					0	0	0			REV__ENST00000281830.3_1_2:223918500-223918569:+|nuORF	REV__ENST00000281830.3_1_2:223918500-223918569:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	527.3416137695312	2	526.763635	1051.51272	-0.4047	-0.00021318	1.0668	0.00056193	0.66205	0.00034875	527.2647778025039	40.649	0.96447	40.649	39.999	40.963	0					47	18	4	0	0	0	0.90224	1	14055	14055		26.341	9.399	1	14383000	+		60879	23319	44389	44740	59324	59324					-0.010979112399127189
VTFSSTANSML	11	Unmodified	_VTFSSTANSML_					0	0	0		nc|ENSG00000188086|Q7RTY3-2|PRSS45P	nc|ENSG00000188086|Q7RTY3-2|PRSS45P	nc|ENSG00000188086|Q7RTY3-2|PRSS45P	MULTI-SECPEP	A375_MHC_IP_R2	2	386.2861328125	3	386.521751	1156.54342	-0.15177	-5.8663E-05	3.9864	0.0015408	3.8346	0.0014822	386.5242960490453	30.447	0.55679	31.165	30.86	31.417	0.71857					22	10	3	0	0	0	0.99227	1	10629	10629		2.6312	0	1	2062400			60880	14822	44390	44741	59325	59325					-0.028585457078406762
VTFTDTYEFYY	11	Unmodified	_VTFTDTYEFYY_					0	0	0			REV__nc|ENSG00000117598|Q32ZL2-2|PLPPR5	REV__nc|ENSG00000117598|Q32ZL2-2|PLPPR5	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6553649902344	3	483.546731	1447.61836	-0.60646	-0.00029325	-0.22234	-0.00010751	-0.82881	-0.00040077	483.88094705372055	30.64	0.4028	31.359	31.114	31.517	0.71857					20	7	4	0	0	0	1.0011	1	10711	10711		0.45452	0.37117	1	8972800	+		60881	18015	44391	44742	59326	59326					-0.08754084695624442
VTFYIGFDP	9	Unmodified	_VTFYIGFDP_					0	0	0		tr|U7T0F0|U7T0F0_FUSNUTyrosine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tyrSPE=3SV=1	tr|U7T0F0|U7T0F0_FUSNUTyrosine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tyrSPE=3SV=1	tr|U7T0F0|U7T0F0_FUSNUTyrosine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tyrSPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	353.57720947265625	3	353.511292	1057.51205	-0.17613	-6.2263E-05	1.0557	0.00037322	0.87961	0.00031095	353.51171785818394	19.597	0.35608	19.597	19.471	19.827	0					8	6	2	0	0	0	0.64808	1	4940	4940		7.609	0	1	1258200			60882	29879	44392	44743	59327	59327					-0.01440750679626035
VTFYLVFSL	9	Unmodified	_VTFYLVFSL_					0	0	0			REV__ENSG00000185052|ENST00000328041|SLC24A3	REV__ENSG00000185052|ENST00000328041|SLC24A3	MULTI-SECPEP	A375_MHC_IP_R2	2	362.9254150390625	3	363.539071	1087.59538	-0.25662	-9.3293E-05	-0.33104	-0.00012035	-0.58766	-0.00021364	363.8731672996748	34.704	0.55559	35.468	35.222	35.778	0.76338					16	10	2	0	0	0	0.69504	1	12458	12458		4.897	0	1	2396700	+		60883	21865	44393	44744	59328	59328					0.05508985768233288
VTGCHFASH	9	Unmodified	_VTGCHFASH_					0	0	0			REV__OLIG3|p.G154R|1|0.36|ENSG00000177468|chr6:137493711-137493711|C/G|missense_variant	REV__OLIG3|p.G154R|1|0.36|ENSG00000177468|chr6:137493711-137493711|C/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	480.1131286621094	2	479.713619	957.412685	-0.68055	-0.00032647	-0.19715	-9.4577E-05	-0.8777	-0.00042105	479.7134717021619	68.387	0.76226	68.387	68.006	68.769	0					36	14	3	0	0	0	0.55818	1	24756	24756		16.942	16.942	1	5512300	+		60884	21459	44394	44745	59329	59329					-0.0677247184536327
VTGCHFASH	9	Unmodified	_VTGCHFASH_					0	0	0			REV__OLIG3|p.G154R|1|0.36|ENSG00000177468|chr6:137493711-137493711|C/G|missense_variant	REV__OLIG3|p.G154R|1|0.36|ENSG00000177468|chr6:137493711-137493711|C/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	480.1127624511719	2	479.713619	957.412685	-0.51659	-0.00024782	-0.57084	-0.00027384	-1.0874	-0.00052166	479.7132611089663	67.648	0.81581	68.385	68.001	68.817	0.73631					34	15	3	0	0	0	0.55818	1	25584	25584		16.942	16.942	1	5589100	+		60885	21459	44394	44745	59330	59330					-0.0677247184536327
VTGCHFASH	9	Unmodified	_VTGCHFASH_					0	0	0			REV__OLIG3|p.G154R|1|0.36|ENSG00000177468|chr6:137493711-137493711|C/G|missense_variant	REV__OLIG3|p.G154R|1|0.36|ENSG00000177468|chr6:137493711-137493711|C/G|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	479.713619	957.412685	-0.51659	-0.00024782	-0.57084	-0.00027384	-1.0874	-0.00052166	479.7132611089663	67.648	0.81581	68.385	68.001	68.817	0.73631	-0.0010307	-0.00017139	NaN	16.942	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5589100	+		60886	21459	44394	44745							-0.0677247184536327
VTGDVRSAFF	10	Unmodified	_VTGDVRSAFF_					0	0	0			REV__ENST00000528300.5_1_14:50459574-50472442:-|nuORF	REV__ENST00000528300.5_1_14:50459574-50472442:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	548.2444458007812	2	549.782556	1097.55056	-0.42808	-0.00023535	0.67274	0.00036986	0.24466	0.00013451	549.7823731420997	70.432	0.81679	70.432	70.085	70.902	0					39	15	3	0	0	0	0.48529	1	25678	25678		29.082	7.3349	1	22882000	+		60887	25801	44395	44746	59331	59331					0.005685549549070856
VTGEATGV	8	Unmodified	_VTGEATGV_					0	0	0			REV__nc|ENSG00000141076|Q969X6-2|UTP4	REV__nc|ENSG00000141076|Q969X6-2|UTP4	MULTI-MSMS	A375_MHC_IP_R2	2	733.5530395507812	1	733.37266	732.365384	-1.22	-0.00089472	-0.31297	-0.00022952	-1.533	-0.0011242	733.3726225500478	56.683	0.46047	57.434	57.101	57.561	0.75015					14	8	2	0	0	0	0.7338	1	21308	21308		24.674	5.2349	1	2434900	+		60888	19243	44396	44747	59332	59332					-0.011504278446977878
VTGEATGV	8	Unmodified	_VTGEATGV_					0	0	0			REV__nc|ENSG00000141076|Q969X6-2|UTP4	REV__nc|ENSG00000141076|Q969X6-2|UTP4	MULTI-MATCH	A375_MHC_IP_R1	1		1	733.37266	732.365384	-0.51747	-0.0003795	0.25423	0.00018644	-0.26324	-0.00019305	733.3728485191255	57.407	0.35852	57.407	57.159	57.518	0	-0.013239	0.00020015	NaN	24.674	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2331100	+		60889	19243	44396	44747							-0.011504278446977878
VTGEATGV	8	Unmodified	_VTGEATGV_					0	0	0			REV__nc|ENSG00000141076|Q969X6-2|UTP4	REV__nc|ENSG00000141076|Q969X6-2|UTP4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	733.37266	732.365384	-1.22	-0.00089472	-0.31297	-0.00022952	-1.533	-0.0011242	733.3726225500478	56.683	0.46047	57.434	57.101	57.561	0.75015	0.013239	-0.00021582	NaN	24.674	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2434900	+		60890	19243	44396	44747							-0.011504278446977878
VTGENISLSLQ	11	Unmodified	_VTGENISLSLQ_					0	0	0		nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1;ENST00000523718.5_1_8:17581004-17613316:-|nuORF;nc|ENSG00000129422|Q9ULD2-5|MTUS1	nc|ENSG00000129422|Q9ULD2-2|MTUS1;nc|ENSG00000129422|Q9ULD2-5|MTUS1	nc|ENSG00000129422|Q9ULD2-5|MTUS1	MULTI-SECPEP	A375_MHC_IP_R1	1	581.211669921875	2	580.81151	1159.60847	0.3669	0.0002131	0.75708	0.00043972	1.124	0.00065282	580.8116781467387	44.908	0.45475	44.908	44.626	45.081	0					17	8	3	0	0	0	0.9754	1	15741	15741		8.1555	0	1	2919500			60891	4190;14596	44397	44748	59333	59333					0.035047720896727697
VTGEVNSTY	9	Unmodified	_VTGEVNSTY_					0	0	0		CON__Q3SZV7	CON__Q3SZV7	CON__Q3SZV7	MULTI-SECPEP	A375_MHC_IP_R1	1	485.1501770019531	2	485.229822	968.445091	-0.26891	-0.00013048	0.49441	0.0002399	0.2255	0.00010942	485.2300567160749	74.323	0.50706	74.323	73.995	74.502	0					16	9	2	0	0	0	0.3243	1	26990	26990		44.407	8.3628	1	1596900		+	60892	619	44398	44749	59334	59334					-0.04039405961384546
VTGFLKCCIY	10	Unmodified	_VTGFLKCCIY_					0	0	0		nc|ENSG00000151665|Q07326-2|PIGF;ENSG00000151665|ENST00000281382|PIGF	nc|ENSG00000151665|Q07326-2|PIGF	nc|ENSG00000151665|Q07326-2|PIGF	MULTI-SECPEP	A375_MHC_IP_R2	2	382.12908935546875	3	382.861051	1145.56132	-0.11799	-4.5175E-05	0.20905	8.0036E-05	0.091055	3.4862E-05	382.8610894200017	44.432	0.50663	45.201	44.934	45.441	0.7691					15	9	2	0	0	0	0.91556	1	16674	16674		5.7834	0	1	1530000			60893	5918	44399	44750	59335	59335					-0.005635019866758739
VTGFVNSLQV	10	Unmodified	_VTGFVNSLQV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R2	2	532.6979370117188	2	532.292756	1062.57096	-0.92795	-0.00049394	-0.49389	-0.0002629	-1.4218	-0.00075684	532.2926640275847	54.413	0.76185	55.164	54.608	55.37	0.75075					34	14	5	0	0	0	0.51493	1	20344	20344		31.268	0	1	8001800	+		60894	19932	44400	44751	59336	59336					0.04217725614716983
VTGFYVYY	8	Unmodified	_VTGFYVYY_					0	0	0			REV__ENST00000436674.5_1_22:38617478-38642853:-|nuORF	REV__ENST00000436674.5_1_22:38617478-38642853:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	506.18511962890625	2	506.244744	1010.47493	0.061282	3.1023E-05	2.5679	0.0013	2.6292	0.001331	506.2458685564379	44.562	0.40711	44.562	44.42	44.827	0					10	7	2	0	0	0	0.96296	1	15638	15638		5.7604	0	1	1031400	+		60895	22418	44401	44752	59337	59337					-0.02988422225382692
VTGGEIASTF	10	Unmodified	_VTGGEIASTF_					0	0	0		ENSG00000166226|ENST00000299300|CCT2;nc|ENSG00000166226|P78371-2|CCT2	ENSG00000166226|ENST00000299300|CCT2	ENSG00000166226|ENST00000299300|CCT2	MULTI-MSMS	A375_MHC_IP_R2	2	491.1907043457031	2	491.248015	980.481476	-0.80841	-0.00039713	-0.60395	-0.00029669	-1.4124	-0.00069382	491.24805075043395	49.464	0.40353	50.221	49.894	50.297	0.75737					9	7	2	0	0	0	0.45919	2	18592	18562;18592		30.637	1.555	1	973800			60896	7044	44402	44753	59338;59339	59339					-0.009545290646542526
VTGGEIASTF	10	Unmodified	_VTGGEIASTF_					0	0	0		ENSG00000166226|ENST00000299300|CCT2;nc|ENSG00000166226|P78371-2|CCT2	ENSG00000166226|ENST00000299300|CCT2	ENSG00000166226|ENST00000299300|CCT2	MULTI-MATCH	A375_MHC_IP_R1	1		2	491.248015	980.481476	-0.28745	-0.00014121	0.32698	0.00016063	0.039522	1.9415E-05	491.2479675676765	50.224	0.46068	50.224	49.998	50.459	0	0.0012185	0.00019783	NaN	30.637	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	733520			60897	7044	44402	44753							-0.009545290646542526
VTGGIFGYKK	10	Unmodified	_VTGGIFGYKK_					0	0	0		tr|U7SWN9|U7SWN9_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01116PE=4SV=1	tr|U7SWN9|U7SWN9_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01116PE=4SV=1	tr|U7SWN9|U7SWN9_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01116PE=4SV=1	MSMS	A375_MHC_IP_R1	1	357.2500305175781	3	357.206203	1068.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.176	1	33.176	32.676	33.676	0								0	0	0	0.12504	1	10801	10801		37.075	3.6297	1				60898	29813	44403	44754	59340	59340					0.06522619856991696
VTGGYDYDV	9	Unmodified	_VTGGYDYDV_					0	0	0		ENST00000511906.5_1_5:37379391-37721408:+|nuORF;ENSG00000082068|ENST00000265107|WDR70	ENST00000511906.5_1_5:37379391-37721408:+|nuORF	ENST00000511906.5_1_5:37379391-37721408:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	495.2128601074219	2	494.716547	987.418542	-0.37984	-0.00018791	0.65938	0.0003262	0.27954	0.00013829	494.71767919265403	99.549	1.2127	99.549	99.117	100.33	0					57	23	4	0	0	0	0.32899	1	36496	36496		28.487	3.0875	1	17624000			60899	1752	44404	44755	59341	59341					-0.07567094852709033
VTGHHLET	8	Unmodified	_VTGHHLET_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.M1167Ffs*18|1|0.44|ENSG00000023516|chr13:42302242-42302251|CTCATGCGAT/-|frameshift_variant;AKAP11|p.E913Rfs*39|1|0.3|ENSG00000023516|chr13:42301482-42301482|G/-|frameshift_variant	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	MULTI-MSMS	A375_MHC_IP_R1	1	447.6036682128906	2	447.227417	892.44028	-0.053378	-2.3872E-05	-0.72603	-0.0003247	-0.77941	-0.00034857	447.2271388154167	28.735	0.5048	28.735	28.44	28.945	0					16	9	2	0	0	0	0.75805	1	8898	8898		18.135	0	1	1303100			60900	1078	44405	44756	59342	59342					-0.010242453134765128
VTGITYGPEG	10	Unmodified	_VTGITYGPEG_					0	0	0			REV__ENSG00000004846|ENST00000404938|ABCB5	REV__ENSG00000004846|ENST00000404938|ABCB5	MULTI-MSMS	A375_MHC_IP_R1	1	497.6474609375	2	497.248015	992.481476	-0.38609	-0.00019198	0.031293	1.556E-05	-0.35479	-0.00017642	497.24804833512036	77.411	0.55711	77.411	77.133	77.69	0					25	10	3	0	0	0	0.39599	1	28247	28247		34.402	3.1334	1	2907500	+		60901	16101	44406	44757	59343	59343					-0.015065290646589347
VTGITYGPEG	10	Unmodified	_VTGITYGPEG_					0	0	0			REV__ENSG00000004846|ENST00000404938|ABCB5	REV__ENSG00000004846|ENST00000404938|ABCB5	MULTI-MSMS	A375_MHC_IP_R2	2	497.647705078125	2	497.248015	992.481476	-0.48814	-0.00024273	0.31905	0.00015865	-0.16909	-8.408E-05	497.2481946715993	76.769	0.65957	77.509	77.095	77.755	0.74052					19	12	2	0	0	0	0.48529	1	29126	29126		29.082	1.4528	1	2093300	+		60902	16101	44406	44757	59344	59344					-0.015065290646589347
VTGITYGPEG	10	Unmodified	_VTGITYGPEG_					0	0	0			REV__ENSG00000004846|ENST00000404938|ABCB5	REV__ENSG00000004846|ENST00000404938|ABCB5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	497.248015	992.481476	-0.38609	-0.00019198	0.031293	1.556E-05	-0.35479	-0.00017642	497.24804833512036	77.411	0.55711	77.411	77.133	77.69	0	-0.049389	-0.00012512	NaN	34.402	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2907500	+		60903	16101	44406	44757							-0.015065290646589347
VTGKIKVI	8	Unmodified	_VTGKIKVI_					0	0	0		IL1RAPL1|p.E504K|1|0.27|ENSG00000169306|chrX:29955239-29955239|G/A|missense_variant	IL1RAPL1|p.E504K|1|0.27|ENSG00000169306|chrX:29955239-29955239|G/A|missense_variant	IL1RAPL1|p.E504K|1|0.27|ENSG00000169306|chrX:29955239-29955239|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	429.2912902832031	2	429.294571	856.574589	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.57	1	140.62	140.12	141.12	0.04216								0	0	0	0.16876	1	55023	55023		0.79363	0	1				60904	14152	44407	44758	59345	59345					0.14056440179240326
VTGKKHPC	8	Unmodified	_VTGKKHPC_					0	0	0		ENSG00000147862|ENST00000380953|NFIB;NFIB|p.S300Ifs*17|1|0.35|ENSG00000147862|chr9:14146715-14146715|C/-|frameshift_variant;nc|ENSG00000147862|O00712|NFIB;nc|ENSG00000147862|O00712-2|NFIB;nc|ENSG00000147862|O00712-4|NFIB	ENSG00000147862|ENST00000380953|NFIB	ENSG00000147862|ENST00000380953|NFIB	MSMS	A375_MHC_IP_R1	1	435.2821960449219	2	435.23673	868.458907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.23	1	137.23	136.73	137.73	0								0	0	0	0.16876	1	52831	52831		5.7604	0	1				60905	5710	44408	44759	59346	59346					0.01941593056722013
VTGKPPGTGW	10	Unmodified	_VTGKPPGTGW_					0	0	0		TNRC6A|p.A961V|1|0.28|ENSG00000090905|chr16:24791524-24791524|C/T|missense_variant	TNRC6A|p.A961V|1|0.28|ENSG00000090905|chr16:24791524-24791524|C/T|missense_variant	TNRC6A|p.A961V|1|0.28|ENSG00000090905|chr16:24791524-24791524|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	501.2842102050781	2	500.266542	998.51853	-0.38123	-0.00019071	0.16285	8.1469E-05	-0.21838	-0.00010925	500.2665086167265	74.227	0.50706	74.227	73.995	74.502	0					23	9	3	0	0	0	0.59108	1	26991	26991		21.537	2.28	1	4849000			60906	29373	44409	44760	59347	59347					0.01921187271773306
VTGLASARNL	10	Unmodified	_VTGLASARNL_					0	0	0		nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;nc|ENSG00000145868|Q6PIJ6-3|FBXO38;ENST00000502571.1_1_5:147784249-147790417:+|nuORF	nc|ENSG00000145868|Q6PIJ6-2|FBXO38	nc|ENSG00000145868|Q6PIJ6-2|FBXO38	MULTI-MSMS	A375_MHC_IP_R1	1	501.6903076171875	2	501.290548	1000.56654	0.040667	2.0386E-05	-0.013379	-6.7069E-06	0.027288	1.3679E-05	501.2904445562053	114.39	5.9949	114.39	111.52	117.51	0					272	117	3	0	0	0	0.70651	1	41689	41689		9.3831	0	1	35626000			60907	5588	44410	44761	59348	59348					0.06628261191792717
VTGLLLVPPPN	11	Unmodified	_VTGLLLVPPPN_					0	0	0			REV__ENST00000603865.1_1_11:75507249-75507624:+|nuORF	REV__ENST00000603865.1_1_11:75507249-75507624:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	559.7164306640625	2	560.342249	1118.66995	-0.4045	-0.00022666	0.086101	4.8246E-05	-0.3184	-0.00017841	560.3422999088208	97.528	0.60792	97.528	97.288	97.896	0					22	11	3	0	0	0	0.92067	1	35887	35887		19.362	0	1	2753100	+		60908	26525	44411	44762	59349	59349					0.11535748579603933
VTGLSPTWPL	10	Unmodified	_VTGLSPTWPL_					0	0	0			REV__ENST00000273062.6_1_2:219269262-219269553:+|nuORF	REV__ENST00000273062.6_1_2:219269262-219269553:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	358.2611999511719	3	357.534209	1069.5808	0.23267	8.3187E-05	1.4566	0.00052078	1.6892	0.00060396	357.86917925999967	35.521	0.30448	35.521	35.269	35.573	0					15	5	4	0	0	0	0.87163	1	11747	11747		16.566	13.571	1	1263100	+		60909	23282	44412	44763	59350	59350					0.04878913620086678
VTGLTEGHSY	10	Unmodified	_VTGLTEGHSY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R1	1	532.204833984375	2	532.256371	1062.49819	-0.62517	-0.00033275	-0.38942	-0.00020727	-1.0146	-0.00054002	532.2562223414731	74.817	0.9122	74.817	74.4	75.312	0					41	17	4	0	0	0	0.69306	1	27421	27421		13.906	3.0821	1	6236400			60910	6151;14694	44413	44764	59351	59351					-0.030560281787074928
VTGLTEGHSY	10	Unmodified	_VTGLTEGHSY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R2	2	531.7079467773438	2	532.256371	1062.49819	-0.80859	-0.00043038	0.2421	0.00012886	-0.56649	-0.00030152	532.2567436083733	50.721	0.7599	51.475	50.955	51.715	0.75406					19	14	2	0	0	0	0.62155	1	19088	19088		19.257	4.4187	1	1360700			60911	6151;14694	44413	44764	59352	59352					-0.030560281787074928
VTGLTPEEL	9	Unmodified	_VTGLTPEEL_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	MULTI-MSMS	A375_MHC_IP_R1	1	479.7025146484375	2	479.758215	957.501877	-0.2777	-0.00013323	0.24967	0.00011978	-0.028033	-1.3449E-05	479.75821246338035	106.07	0.56233	106.07	105.76	106.32	0					14	10	2	0	0	0	0.2264	1	39012	39012		36.044	3.9272	1	1788700			60912	7719	44414	44765	59353	59353					0.02142641595139594
VTGNLNSDPL	10	Unmodified	_VTGNLNSDPL_					0	0	0		ENST00000566987.5_1_16:71893923-71901814:-|nuORF;nc|ENSG00000102984|O75541-2|ZNF821;ENSG00000102984|ENST00000425432|ZNF821	ENST00000566987.5_1_16:71893923-71901814:-|nuORF	ENST00000566987.5_1_16:71893923-71901814:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	515.2027587890625	2	515.264196	1028.51384	-0.45686	-0.00023541	-0.054846	-2.826E-05	-0.51171	-0.00026367	515.2641769413335	72.896	0.71076	72.896	72.575	73.285	0					31	13	3	0	0	0	0.48529	1	26631	26631		29.082	3.6823	1	16645000			60913	2409	44415	44766	59354	59354					0.0007225833833217621
VTGPGGVF	8	Unmodified	_VTGPGGVF_					0	0	0		LIN28A|p.G119R|1|0.32|ENSG00000131914|chr1:26425429-26425429|G/A|missense_variant;ENSG00000131914|ENST00000326279|LIN28A	LIN28A|p.G119R|1|0.32|ENSG00000131914|chr1:26425429-26425429|G/A|missense_variant	LIN28A|p.G119R|1|0.32|ENSG00000131914|chr1:26425429-26425429|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	733.7880859375	1	733.387916	732.38064	-0.39335	-0.00028848	0.52829	0.00038744	0.13494	9.8963E-05	733.3877086096209	78.429	0.75854	78.429	77.998	78.756	0					26	14	3	0	0	0	0.72761	1	28701	28701		26.341	0	1	5360500			60914	4357	44416	44767	59355	59355					0.0037448374314408284
VTGPGGVF	8	Unmodified	_VTGPGGVF_					0	0	0		LIN28A|p.G119R|1|0.32|ENSG00000131914|chr1:26425429-26425429|G/A|missense_variant;ENSG00000131914|ENST00000326279|LIN28A	LIN28A|p.G119R|1|0.32|ENSG00000131914|chr1:26425429-26425429|G/A|missense_variant	LIN28A|p.G119R|1|0.32|ENSG00000131914|chr1:26425429-26425429|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		1	733.387916	732.38064	-0.82614	-0.00060588	0.39499	0.00028968	-0.43114	-0.0003162	733.388000716734	77.498	0.61353	78.241	77.958	78.572	0.74293	-0.094268	-3.9366E-05	NaN	26.341	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4066700			60915	4357	44416	44767							0.0037448374314408284
VTGPPALAP	9	Unmodified	_VTGPPALAP_					0	0	0			REV__EPS8|p.P218L|1|0.31|ENSG00000151491|chr12:15665839-15665839|G/A|missense_variant	REV__EPS8|p.P218L|1|0.31|ENSG00000151491|chr12:15665839-15665839|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	412.1394348144531	2	411.739628	821.464704	0.015457	6.3644E-06	-0.50593	-0.00020831	-0.49047	-0.00020195	411.7393998354009	75.67	0.56055	76.411	76.232	76.792	0.74052					13	10	2	0	0	0	0.43707	1	28759	28759		36.044	19.102	1	1432300	+		60916	26587	44417	44768	59356	59356					0.046830148400431426
VTGPPALAP	9	Unmodified	_VTGPPALAP_					0	0	0			REV__EPS8|p.P218L|1|0.31|ENSG00000151491|chr12:15665839-15665839|G/A|missense_variant	REV__EPS8|p.P218L|1|0.31|ENSG00000151491|chr12:15665839-15665839|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R1	1		2	411.739628	821.464704	0.056309	2.3185E-05	0.13709	5.6447E-05	0.1934	7.9632E-05	411.73968507320325	76.503	0.50493	76.503	76.219	76.724	0	0.045798	0.00019554	NaN	36.044	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	637220	+		60917	26587	44417	44768							0.046830148400431426
VTGPPLNTLNP	11	Unmodified	_VTGPPLNTLNP_					0	0	0			REV__nc|ENSG00000189308|Q6MZP7-4|LIN54	REV__nc|ENSG00000189308|Q6MZP7-4|LIN54	MULTI-SECPEP	A375_MHC_IP_R2	2	562.2110595703125	2	561.811313	1121.60807	-0.5824	-0.0003272	-0.083366	-4.6836E-05	-0.66577	-0.00037404	561.8111393964057	77.845	1.0694	78.588	78.165	79.234	0.74293					58	20	4	0	0	0	0.87263	1	29701	29701		29.841	29.841	1	12921000	+		60918	22149	44418	44769	59357	59357					0.05213397160491695
VTGPPRKG	8	Unmodified	_VTGPPRKG_					0	0	0		ENST00000541788.1_22:38616387-38617064:-|nuORF	ENST00000541788.1_22:38616387-38617064:-|nuORF	ENST00000541788.1_22:38616387-38617064:-|nuORF	MSMS	A375_MHC_IP_R1	1	406.26812744140625	2	406.24287	810.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.398	1	53.398	52.898	53.898	0								0	0	0	0.16876	1	19035	19035		8.5933	0.68312	1				60919	13292	44419	44770	59358	59358					0.05836952791423755
VTGRECAH	8	Unmodified	_VTGRECAH_					0	0	0		ENST00000581744.1_1_17:80274441-80275395:-|nuORF	ENST00000581744.1_1_17:80274441-80275395:-|nuORF	ENST00000581744.1_1_17:80274441-80275395:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	437.1052551269531	2	436.705794	871.397035	-0.038466	-1.6798E-05	-0.81416	-0.00035555	-0.85263	-0.00037235	436.70547555176773	62.702	0.46111	62.702	62.505	62.966	0					14	8	2	0	0	0	0.77624	1	22680	22680		8.5933	0.68312	1	1469800			60920	13686	44420	44771	59359	59359					-0.04380758362412962
VTGRECAH	8	Unmodified	_VTGRECAH_					0	0	0		ENST00000581744.1_1_17:80274441-80275395:-|nuORF	ENST00000581744.1_1_17:80274441-80275395:-|nuORF	ENST00000581744.1_1_17:80274441-80275395:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	437.1053771972656	2	436.705794	871.397035	-0.55444	-0.00024213	-0.88835	-0.00038795	-1.4428	-0.00063007	436.7053748293285	61.937	0.40294	62.68	62.421	62.824	0.74263					13	7	2	0	0	0	0.77624	1	23505	23505		8.5933	0.68312	1	1360900			60921	13686	44420	44771	59360	59360					-0.04380758362412962
VTGRLDMQKH	10	Unmodified	_VTGRLDMQKH_					0	0	0		PITPNM1|p.P1069L|1|0.83|ENSG00000110697|chr11:67493546-67493546|G/A|missense_variant	PITPNM1|p.P1069L|1|0.83|ENSG00000110697|chr11:67493546-67493546|G/A|missense_variant	PITPNM1|p.P1069L|1|0.83|ENSG00000110697|chr11:67493546-67493546|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	395.61102294921875	3	395.545002	1183.61318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.439	1	37.439	36.939	37.939	0								0	0	0	0.15207	1	12622	12622		12.175	2.6308	1				60922	15182	44421	44772	59361	59361					0.028713777514440153
VTGTIGEEQE	10	Unmodified	_VTGTIGEEQE_					0	0	0		ENST00000446622.5_1_2:216199652-216212358:+|nuORF	ENST00000446622.5_1_2:216199652-216212358:+|nuORF	ENST00000446622.5_1_2:216199652-216212358:+|nuORF	MSMS	A375_MHC_IP_R1	1	531.6656494140625	2	531.751118	1061.48768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.283	1	75.283	74.783	75.783	0								0	0	0	0.14601	1	27428	27428		25.399	0	1				60923	12038	44422	44773	59362	59362					-0.04060055623813241
VTGTPEQYV	9	Unmodified	_VTGTPEQYV_					0	0	0		ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF;ENSG00000184752|ENST00000327772|NDUFA12	ENST00000538372.6_1_12:95365218-95388109:-|nuORF	ENST00000538372.6_1_12:95365218-95388109:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	497.6473693847656	2	497.248015	992.481476	-0.47929	-0.00023833	0.79067	0.00039316	0.31138	0.00015483	497.24828582110945	73.943	0.5089	74.681	74.449	74.958	0.73752					11	9	2	0	0	0	0.62767	1	28096	28096		11.64	0	1	1086400			60924	8607	44423	44774	59363	59363					-0.015065290646703033
VTGVEYIAAN	10	Unmodified	_VTGVEYIAAN_					0	0	0		tr|U7T4S4|U7T4S4_FUSNUCelldivisionproteinFtsZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsZPE=3SV=1	tr|U7T4S4|U7T4S4_FUSNUCelldivisionproteinFtsZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsZPE=3SV=1	tr|U7T4S4|U7T4S4_FUSNUCelldivisionproteinFtsZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsZPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	518.6891479492188	2	518.769114	1035.52368	-0.52322	-0.00027143	0.3168	0.00016435	-0.20642	-0.00010709	518.7693616057809	74.371	0.86086	74.371	73.843	74.704	0					34	16	3	0	0	0	0.63639	1	26971	26971		18.146	3.3081	1	6939000			60925	30002	44424	44775	59364	59364					0.007334463437246086
VTGVVDECIF	10	Unmodified	_VTGVVDECIF_					0	0	0		ENSG00000177051|ENST00000317683|FBXO46	ENSG00000177051|ENST00000317683|FBXO46	ENSG00000177051|ENST00000317683|FBXO46	MULTI-SECPEP	A375_MHC_IP_R1	1	540.6871948242188	2	541.26535	1080.51615	-0.5906	-0.00031967	2.1386	0.0011576	1.548	0.0008379	541.2658898020794	59.813	0.56023	59.813	59.548	60.109	0					23	10	3	0	0	0	0.76414	1	21446	21446		26.884	6.43	1	1311300			60926	8059	44425	44776	59365	59365					-0.020890292482363293
VTGYNKTRF	9	Unmodified	_VTGYNKTRF_					0	0	0		nc|ENSG00000144857|Q9BWV1|BOC;ENSG00000144857|ENST00000682979|BOC	nc|ENSG00000144857|Q9BWV1|BOC	nc|ENSG00000144857|Q9BWV1|BOC	MULTI-SECPEP	A375_MHC_IP_R2	2	543.6785278320312	2	543.290548	1084.56654	-1.1115	-0.00060386	1.1492	0.00062434	0.037686	2.0475E-05	543.2908558370464	51.867	0.357	52.619	52.372	52.729	0.75225					12	6	2	0	0	0	0.73363	1	19570	19570		3.5965	0	1	1859600			60927	5523	44426	44777	59366	59366					0.027642611918054172
VTHAYYRDA	9	Unmodified	_VTHAYYRDA_					0	0	0		ENST00000527040.5_1_17:72733375-72740608:+|nuORF;nc|ENSG00000172794|Q96AX2-4|RAB37;nc|ENSG00000167964|Q9ULW5-2|RAB26;nc|ENSG00000172794|Q96AX2-2|RAB37;ENSG00000172794|ENST00000392613|RAB37;ENST00000562735.5_1_16:2198751-2203097:+|nuORF;nc|ENSG00000172794|Q96AX2-3|RAB37;ENSG00000167964|ENST00000210187|RAB26;ENST00000392617.7_1_17:72667365-72740608:+|nuORF	ENST00000527040.5_1_17:72733375-72740608:+|nuORF	ENST00000527040.5_1_17:72733375-72740608:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	366.64483642578125	3	365.845446	1094.51451	-0.067768	-2.4793E-05	0.37382	0.00013676	0.30606	0.00011197	365.8455816167413	36.67	0.4567	36.67	36.439	36.895	0					13	8	2	0	0	0	0.78753	1	12274	12274		2.4985	0.84587	1	1811500			60928	7240	44427	44778	59367	59367					-0.028969022219598628
VTHAYYRDA	9	Unmodified	_VTHAYYRDA_					0	0	0		ENST00000527040.5_1_17:72733375-72740608:+|nuORF;nc|ENSG00000172794|Q96AX2-4|RAB37;nc|ENSG00000167964|Q9ULW5-2|RAB26;nc|ENSG00000172794|Q96AX2-2|RAB37;ENSG00000172794|ENST00000392613|RAB37;ENST00000562735.5_1_16:2198751-2203097:+|nuORF;nc|ENSG00000172794|Q96AX2-3|RAB37;ENSG00000167964|ENST00000210187|RAB26;ENST00000392617.7_1_17:72667365-72740608:+|nuORF	ENST00000527040.5_1_17:72733375-72740608:+|nuORF	ENST00000527040.5_1_17:72733375-72740608:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	366.64495849609375	3	365.845446	1094.51451	-0.088119	-3.2238E-05	0.11534	4.2197E-05	0.027221	9.9588E-06	365.8454710135352	35.829	0.61082	36.592	36.283	36.894	0.76338					26	11	3	0	0	0	0.78753	1	13006	13006		4.897	0.95262	1	1725900			60929	7240	44427	44778	59368	59368					-0.028969022219598628
VTHDHSLDI	9	Unmodified	_VTHDHSLDI_					0	0	0		nc|ENSG00000144619|Q8IWV2-3|CNTN4;nc|ENSG00000144619|Q8IWV2-4|CNTN4;ENSG00000144619|ENST00000418658|CNTN4;ENST00000430505.6_1_3:2613181-3079017:+|nuORF	nc|ENSG00000144619|Q8IWV2-3|CNTN4	nc|ENSG00000144619|Q8IWV2-3|CNTN4	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1557006835938	2	518.756538	1035.49852	-0.46293	-0.00024015	0.25531	0.00013245	-0.20762	-0.0001077	518.7567877719665	72.977	0.50748	72.977	72.728	73.235	0					15	9	2	0	0	0	0.75466	1	26588	26588		4.3292	0	1	1073200			60930	5498	44428	44779	59369	59369					-0.017806084588528392
VTHDHSLDI	9	Unmodified	_VTHDHSLDI_					0	0	0		nc|ENSG00000144619|Q8IWV2-3|CNTN4;nc|ENSG00000144619|Q8IWV2-4|CNTN4;ENSG00000144619|ENST00000418658|CNTN4;ENST00000430505.6_1_3:2613181-3079017:+|nuORF	nc|ENSG00000144619|Q8IWV2-3|CNTN4	nc|ENSG00000144619|Q8IWV2-3|CNTN4	MULTI-MATCH	A375_MHC_IP_R2	2		2	518.756538	1035.49852	-0.87133	-0.00045201	-0.063077	-3.2722E-05	-0.9344	-0.00048473	518.7565179217028	72.255	0.50554	72.99	72.72	73.225	0.73421	0.0063227	-7.5905E-05	NaN	4.3292	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1147300			60931	5498	44428	44779							-0.017806084588528392
VTHDMDMCY	9	Unmodified	_VTHDMDMCY_					0	0	0		ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2	ENSG00000076685|ENST00000404739|NT5C2	ENSG00000076685|ENST00000404739|NT5C2	MSMS	A375_MHC_IP_R2	2	557.6798095703125	2	557.703745	1113.39294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.235	1	80.98	80.48	81.48	0.74474								0	0	0	0.15486	1	30460	30460		4.756	0	1				60932	1638	44429	44780	59370	59370					-0.15922351962626635
VTHECACL	8	Unmodified	_VTHECACL_					0	0	0		ENSG00000148400|ENST00000651671|NOTCH1	ENSG00000148400|ENST00000651671|NOTCH1	ENSG00000148400|ENST00000651671|NOTCH1	MSMS	A375_MHC_IP_R2	2	438.3058776855469	2	438.191131	874.367709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.896	1	52.648	52.148	53.148	0.75225								0	0	0	0.16876	1	19543	19543		5.7604	0.52976	1				60933	5739	44430	44781	59371	59371					-0.07450038702916117
VTHENCIPEV	10	Unmodified	_VTHENCIPEV_					0	0	0		ITPR1|p.D1423N|1|0.29|ENSG00000150995|chr3:4693727-4693727|G/A|missense_variant	ITPR1|p.D1423N|1|0.29|ENSG00000150995|chr3:4693727-4693727|G/A|missense_variant	ITPR1|p.D1423N|1|0.29|ENSG00000150995|chr3:4693727-4693727|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	381.58441162109375	3	380.849979	1139.52811	-0.41471	-0.00015794	0.61649	0.00023479	0.20178	7.6846E-05	381.18443297767664	56.581	0.61107	57.331	57.152	57.763	0.75015					15	11	2	0	0	0	0.91932	1	21423	21423		11.518	0	1	2240900			60934	14181	44431	44782	59372	59372					-0.036074125050163275
VTHFIRKISRL	11	Unmodified	_VTHFIRKISRL_					0	0	0			REV__ENSG00000100353|ENST00000216190|EIF3D	REV__ENSG00000100353|ENST00000216190|EIF3D	MSMS	A375_MHC_IP_R2	2	685.4771118164062	2	685.424971	1368.83539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.238	1	87.971	87.471	88.471	0.733								0	0	0	0.16307	1	33176	33176		2.7352	1.5419	1		+		60935	17081	44432	44783	59373	59373					0.16572400159111567
VTHHPTPVPH	10	Unmodified	_VTHHPTPVPH_					0	0	0			REV__nc|ENSG00000131149|Q14687-2|GSE1	REV__nc|ENSG00000131149|Q14687-2|GSE1	MULTI-SECPEP	A375_MHC_IP_R1	1	374.9453430175781	3	374.533202	1120.57778	0.55405	0.00020751	0.3588	0.00013438	0.91285	0.00034189	374.53330946348086	45.641	0.4547	45.641	45.384	45.839	0					18	8	3	0	0	0	0.9269	1	15918	15918		6.1918	0.40842	1	1314300	+		60936	18592	44433	44784	59374	59374					0.022310832859375296
VTHIGRVY	8	Unmodified	_VTHIGRVY_					0	0	0		ENSG00000151247|ENST00000450253|EIF4E;nc|ENSG00000151247|P06730-3|EIF4E;nc|ENSG00000151247|P06730-2|EIF4E	ENSG00000151247|ENST00000450253|EIF4E	ENSG00000151247|ENST00000450253|EIF4E	MULTI-MSMS	A375_MHC_IP_R1	1	473.1688537597656	2	472.769252	943.52395	-0.39795	-0.00018814	-1.0878	-0.00051426	-1.4857	-0.0007024	472.7691078573335	25.229	0.25286	25.229	25.104	25.357	0					6	4	2	0	0	0	0.6833	1	7364	7364		39.95	3.9055	1	4737900			60937	5891	44434	44785	59375	59375					0.04992910854230104
VTHIGRVY	8	Unmodified	_VTHIGRVY_					0	0	0		ENSG00000151247|ENST00000450253|EIF4E;nc|ENSG00000151247|P06730-3|EIF4E;nc|ENSG00000151247|P06730-2|EIF4E	ENSG00000151247|ENST00000450253|EIF4E	ENSG00000151247|ENST00000450253|EIF4E	MULTI-MATCH	A375_MHC_IP_R2	2		2	472.769252	943.52395	-0.91521	-0.00043269	-0.72727	-0.00034383	-1.6425	-0.00077652	472.76926540282824	24.594	0.15313	25.237	25.11	25.263	0.64368	0.0042667	0.00019308	NaN	39.95	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1876200			60938	5891	44434	44785							0.04992910854230104
VTHKFNKPCI	10	Unmodified	_VTHKFNKPCI_					0	0	0		ENSG00000151151|ENST00000373935|IPMK;ENST00000585431.2_1_19:16022160-16022415:-|nuORF	ENSG00000151151|ENST00000373935|IPMK	ENSG00000151151|ENST00000373935|IPMK	MULTI-SECPEP	A375_MHC_IP_R2	2	395.9402160644531	3	396.218226	1185.63285	-0.15639	-6.1965E-05	-3.136	-0.0012425	-3.2924	-0.0013045	396.551963085362	39.694	0.45737	40.469	40.269	40.727	0.77451					17	8	3	0	0	0	0.91932	1	14726	14726		15.739	1.3332	1	1702300			60939	5884	44435	44786	59376	59376					0.04745753762199456
VTHKKIAVRW	10	Unmodified	_VTHKKIAVRW_					0	0	0		ENST00000232905.3_1_3:40353564-40353702:+|nuORF	ENST00000232905.3_1_3:40353564-40353702:+|nuORF	ENST00000232905.3_1_3:40353564-40353702:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	413.5962829589844	3	413.25578	1236.74551	0.082044	3.3905E-05	0.05505	2.275E-05	0.13709	5.6655E-05	413.25578159725	23.368	0.51074	23.368	23.176	23.687	0					26	9	4	0	0	0	0.70565	1	6483	6483		9.7643	8.022	1	10857000			60940	10149	44436	44787	59377	59377					0.136607705505412
VTHKKIAVRW	10	Unmodified	_VTHKKIAVRW_					0	0	0		ENST00000232905.3_1_3:40353564-40353702:+|nuORF	ENST00000232905.3_1_3:40353564-40353702:+|nuORF	ENST00000232905.3_1_3:40353564-40353702:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	413.9576721191406	3	413.25578	1236.74551	-0.31154	-0.00012874	-0.29453	-0.00012172	-0.60607	-0.00025046	413.2556717819903	20.259	0.71209	20.869	20.549	21.262	0.61029					38	13	4	0	0	0	0.22146	2	6331	6259;6331		47.053	34.124	1	4296700			60941	10149	44436	44787	59378;59379	59379					0.136607705505412
VTHKLIEVTQS	11	Unmodified	_VTHKLIEVTQS_					0	0	0			REV__ENSG00000184702|ENST00000455784|SEPTIN5	REV__ENSG00000184702|ENST00000455784|SEPTIN5	MSMS	A375_MHC_IP_R2	2	418.9629821777344	3	418.906594	1253.69795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.989	1	19.592	19.092	20.092	0.60308								0	0	0	0.16187	1	5744	5744		7.4291	0	1		+		60942	21834	44437	44788	59380	59380					0.08125026769039323
VTHLADQTE	9	Unmodified	_VTHLADQTE_					0	0	0			REV__nc|ENSG00000197429|Q9Y573-2|IPP	REV__nc|ENSG00000197429|Q9Y573-2|IPP	MULTI-MSMS	A375_MHC_IP_R1	1	508.167724609375	2	507.248546	1012.48254	-0.57638	-0.00029237	-0.47727	-0.00024209	-1.0537	-0.00053446	507.2482297420021	86.602	1.0135	86.602	86.172	87.186	0					46	19	4	0	0	0	0.64808	1	31613	31613		11.64	0.81637	1	25166000	+		60943	22288	44438	44789	59381	59381					-0.02320314695759862
VTHLYVGCYY	10	Unmodified	_VTHLYVGCYY_					0	0	0			REV__ARSH|p.H425Y|1|0.83|ENSG00000205667|chrX:3029320-3029320|C/T|missense_variant	REV__ARSH|p.H425Y|1|0.83|ENSG00000205667|chrX:3029320-3029320|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	609.6871948242188	2	609.286617	1216.55868	-0.34778	-0.0002119	1.4352	0.00087445	1.0874	0.00066256	609.2872493859303	68.714	0.60793	69.449	69.171	69.779	0.73511					14	11	2	0	0	0	0.9269	1	26068	26068		3.5965	0	1	2082700	+		60944	15455	44439	44790	59382	59382					-0.04093634119954004
VTHRRMSLY	9	Unmodified	_VTHRRMSLY_					0	0	0			REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	MSMS	A375_MHC_IP_R2	2	581.842041015625	2	581.811125	1161.6077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.037	1	95.788	95.288	96.288	0.75045								0	0	0	0.15486	1	36107	36107		11.64	0	1		+		60945	20176	44440	44791	59383	59383					0.033356989596313724
VTHSDSLVQ	9	Unmodified	_VTHSDSLVQ_					0	0	0			REV__ENST00000475645.1_1_6:106633518-106633809:-|nuORF	REV__ENST00000475645.1_1_6:106633518-106633809:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	493.6507873535156	2	493.251089	984.487624	-0.098516	-4.8593E-05	-0.65293	-0.00032206	-0.75144	-0.00037065	493.25079820040355	108.79	1.6257	108.79	108.46	110.09	0					87	31	4	0	0	0	0.60917	1	39871	39871		13.906	4.5229	1	25006000	+		60946	25171	44441	44792	59384	59384					-0.005240108331349802
VTHSVRIGE	9	Unmodified	_VTHSVRIGE_					0	0	0		ENST00000549462.1_1_12:53591166-53600997:-|nuORF	ENST00000549462.1_1_12:53591166-53600997:-|nuORF	ENST00000549462.1_1_12:53591166-53600997:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	499.9827880859375	2	499.274898	996.535243	-0.69068	-0.00034484	0.01655	8.263E-06	-0.67413	-0.00033658	499.27513464558007	23.582	0.2037	23.582	23.432	23.635	0					5	3	2	0	0	0	0.8028	1	6482	6482		0.45834	0	1	1399000			60947	13360	44442	44793	59385	59385					0.03683688157718734
VTHTPQVSF	9	Unmodified	_VTHTPQVSF_					0	0	0			REV__PTPRZ1|p.N1301Tfs*23|1|0.25|ENSG00000106278|chr7:122012947-122012947|A/-|frameshift_variant	REV__PTPRZ1|p.N1301Tfs*23|1|0.25|ENSG00000106278|chr7:122012947-122012947|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	507.9801330566406	2	508.263999	1014.51345	-1.0439	-0.00053056	3.3812	0.0017186	2.3374	0.001188	508.7669342208831	54.201	0.30473	54.952	54.763	55.068	0.75075					7	5	2	0	0	0	0.69504	1	20493	20493		4.3292	0	1	1334700	+		60948	17437	44443	44794	59386	59386					0.006768834091417375
VTHVPSFKL	9	Unmodified	_VTHVPSFKL_					0	0	0			REV__ENST00000344726.9_2_6:79911083-79911197:-|nuORF	REV__ENST00000344726.9_2_6:79911083-79911197:-|nuORF	MSMS	A375_MHC_IP_R2	2	514.3941040039062	2	514.300384	1026.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.233	1	77.975	77.475	78.475	0.74293								0	0	0	0.15283	1	29328	29328		16.942	0	1		+		60949	23764	44444	44795	59387	59387					0.07398637202550162
VTIAGVPSPQ	10	Unmodified	_VTIAGVPSPQ_					0	0	0		ENSG00000189079|ENST00000334344|ARID2;ARID2|p.G1450Dfs*3|1|0.36|ENSG00000189079|chr12:45852471-45852471|G/-|frameshift_variant;ARID2|p.T1506Qfs*10|1|0.88|ENSG00000189079|chr12:45852638-45852638|T/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ARID2|p.T1216Sfs*27|1|0.32|ENSG00000189079|chr12:45851770-45851770|C/-|frameshift_variant;ARID2|p.V1265Efs*22|1|0.07|ENSG00000189079|chr12:45851916-45851940|GTCATGGAGAACCCGTCCTGCCGAC/-|frameshift_variant	ENSG00000189079|ENST00000334344|ARID2	ENSG00000189079|ENST00000334344|ARID2	MULTI-SECPEP	A375_MHC_IP_R2	2	485.3640441894531	2	484.7742	967.533846	-0.76113	-0.00036898	0.17007	8.2445E-05	-0.59106	-0.00028653	484.7742750247656	40.74	0.86376	41.515	41.082	41.946	0.77451					26	16	2	0	0	0	0.19943	1	15017	15017		51.63	15.503	1	9766900			60950	8957	44445	44796	59388	59388					0.04878054068944948
VTIAVGASL	9	Unmodified	_VTIAVGASL_					0	0	0		nc|ENSG00000165246|Q8NFZ3|NLGN4Y;ENSG00000146938|ENST00000381095|NLGN4X;nc|ENSG00000146938|Q8N0W4-2|NLGN4X;ENSG00000165246|ENST00000684976|NLGN4Y;nc|ENSG00000165246|Q8NFZ3-2|NLGN4Y;nc|ENSG00000169760|Q8N2Q7-2|NLGN1;ENSG00000169760|ENST00000695368|NLGN1;nc|ENSG00000169760|Q8N2Q7|NLGN1;nc|ENSG00000196338|Q9NZ94-3|NLGN3;nc|ENSG00000196338|Q9NZ94-2|NLGN3;ENSG00000196338|ENST00000358741|NLGN3	nc|ENSG00000165246|Q8NFZ3|NLGN4Y;nc|ENSG00000169760|Q8N2Q7-2|NLGN1;nc|ENSG00000196338|Q9NZ94-3|NLGN3	nc|ENSG00000165246|Q8NFZ3|NLGN4Y	MULTI-SECPEP	A375_MHC_IP_R2	2	415.6278381347656	2	415.752736	829.490919	-0.16333	-6.7903E-05	0.25615	0.0001065	0.092827	3.8593E-05	415.7528058015755	50.532	0.6087	51.286	51.006	51.615	0.75406					23	11	3	0	0	0	0.28475	1	18962	18962		39.957	0	1	3988000			60951	5646;7436;9027	44446	44797	59389	59389					0.06935284011524345
VTIFIELKK	9	Unmodified	_VTIFIELKK_					0	0	0		DICER1|p.S828F|2|0.43|ENSG00000100697|chr14:95108047-95108047|G/A|missense_variant	DICER1|p.S828F|2|0.43|ENSG00000100697|chr14:95108047-95108047|G/A|missense_variant	DICER1|p.S828F|2|0.43|ENSG00000100697|chr14:95108047-95108047|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	364.2933654785156	3	364.23387	1089.67978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.064	1	57.064	56.564	57.564	0								0	0	0	0.15486	1	20459	20459		4.5289	0.93237	1				60952	746	44447	44798	59390	59390					0.13852936584976305
VTIGERFVRA	10	Unmodified	_VTIGERFVRA_					0	0	0			REV__ENSG00000126882|ENST00000372271|FAM78A	REV__ENSG00000126882|ENST00000372271|FAM78A	MULTI-MSMS	A375_MHC_IP_R2	2	574.3717651367188	2	574.332747	1146.65094	-0.53621	-0.00030796	1.5639	0.00089821	1.0277	0.00059024	574.3333421558506	54.113	0.30535	54.864	54.712	55.018	0.75105					6	5	2	0	0	0	0.70312	1	20468	20468		17.113	6.289	1	1301800	+		60953	18404	44448	44799	59391	59391					0.08348212008581868
VTIGTETVEV	10	Unmodified	_VTIGTETVEV_					0	0	0		tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	524.680908203125	2	524.282054	1046.54956	-0.83865	-0.00043969	-0.46889	-0.00024583	-1.3075	-0.00068552	524.2816895046872	61.565	0.80692	62.31	61.919	62.726	0.74504					45	15	4	0	0	0	0.23156	1	23428	23428		46.021	0	1	14377000			60954	29975	44449	44800	59392	59392					0.02814295795315047
VTIIIKILLLP	11	Unmodified	_VTIIIKILLLP_					0	0	0		tr|U7T0Y6|U7T0Y6_FUSNUInnermembraneproteinoxaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00741PE=3SV=1	tr|U7T0Y6|U7T0Y6_FUSNUInnermembraneproteinoxaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00741PE=3SV=1	tr|U7T0Y6|U7T0Y6_FUSNUInnermembraneproteinoxaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00741PE=3SV=1	MSMS	A375_MHC_IP_R2	2	618.4407958984375	2	618.438692	1234.86283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.748	1	80.493	79.993	80.993	0.74474								0	0	0	0.16354	1	30269	30269		0.30703	0	1				60955	29894	44450	44801	59393	59393					0.2547949064680779
VTIILLLSCDF	11	Unmodified	_VTIILLLSCDF_					0	0	0		nc|ENSG00000259024|Q96ET8-2|TVP23C;ENSG00000175106|ENST00000518321|TVP23C;ENSG00000171928|ENST00000307767|TVP23B;nc|ENSG00000259024|Q96ET8|TVP23C	nc|ENSG00000259024|Q96ET8-2|TVP23C	nc|ENSG00000259024|Q96ET8-2|TVP23C	MSMS	A375_MHC_IP_R1	1	618.6885986328125	2	618.84905	1235.68355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.731	1	60.731	60.231	61.231	0								0	0	0	0.15694	1	21870	21870		16.149	3.9084	1				60956	7659	44451	44802	59394	59394					0.07513238296542113
VTIKDLQAKM	10	Unmodified	_VTIKDLQAKM_					0	0	0		nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	MSMS	A375_MHC_IP_R2	2	382.9573669433594	3	382.889886	1145.64783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.354	1	50.112	49.612	50.612	0.75737								0	0	0	0.14741	1	18545	18545		14.957	0	1				60957	14445	44452	44803	59395	59395					0.08083200839519122
VTIKDLQAKM	10	Unmodified	_VTIKDLQAKM_					0	0	0		nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	MSMS	A375_MHC_IP_R2	2	382.9327087402344	3	382.889886	1145.64783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.45	1	50.207	49.707	50.707	0.75737								0	0	0	0.14741	1	18582	18582		14.957	3.3258	1				60958	14445	44452	44803	59396	59396					0.08083200839519122
VTIKQEPV	8	Unmodified	_VTIKQEPV_					0	0	0		ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	MULTI-MSMS	A375_MHC_IP_R1	1	457.7005310058594	2	457.271293	912.528032	-0.061359	-2.8058E-05	0.028803	1.3171E-05	-0.032556	-1.4887E-05	457.27120563884876	42.659	0.70737	42.659	42.336	43.043	0					23	13	3	0	0	0	0.7256	1	14872	14872		26.884	0	1	2920700			60959	5151	44453	44804	59397	59397					0.06826955557289693
VTIKREET	8	Unmodified	_VTIKREET_					0	0	0		ENSG00000167257|ENST00000300650|RNF214;nc|ENSG00000167257|Q8ND24-2|RNF214	ENSG00000167257|ENST00000300650|RNF214	ENSG00000167257|ENST00000300650|RNF214	MULTI-SECPEP	A375_MHC_IP_R1	1	488.4692077636719	2	488.277106	974.53966	-0.22144	-0.00010812	0.76992	0.00037593	0.54848	0.00026781	488.27738474811673	51.011	0.40456	51.011	50.764	51.168	0					13	7	2	0	0	0	0.87023	1	18145	18145		21.537	0	1	2448600			60960	7172	44454	44805	59398	59398					0.051371525806075624
VTILAQTFFQ	10	Unmodified	_VTILAQTFFQ_					0	0	0			REV__ENSG00000133704|ENST00000256079|IPO8	REV__ENSG00000133704|ENST00000256079|IPO8	MULTI-SECPEP	A375_MHC_IP_R1	1	390.2851257324219	3	389.88513	1166.63356	0.23547	9.1805E-05	-0.23587	-9.1962E-05	-0.00040376	-1.5742E-07	389.8851973864007	63.246	0.56313	63.246	62.914	63.477	0					23	10	3	0	0	0	0.93843	1	22876	22876		3.5927	0.85748	1	2665100	+		60961	18729	44455	44806	59399	59399					0.056908716829184414
VTILHRTVL	9	Unmodified	_VTILHRTVL_					0	0	0		ENST00000392038.6_1_19:40738806-40739223:-|nuORF	ENST00000392038.6_1_19:40738806-40739223:-|nuORF	ENST00000392038.6_1_19:40738806-40739223:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	526.734619140625	2	526.334759	1050.65496	-0.78401	-0.00041265	-0.014285	-7.5185E-06	-0.7983	-0.00042017	526.3347188628572	60.184	0.50879	60.931	60.653	61.162	0.74714					16	9	2	0	0	0	0.74412	1	22798	22798		6.2058	0	1	2174400			60962	11412	44456	44807	59400	59400					0.13166301502269562
VTILLLLRLV	10	Unmodified	_VTILLLLRLV_					0	0	0		ENSG00000185899|ENST00000332690|TAS2R60	ENSG00000185899|ENST00000332690|TAS2R60	ENSG00000185899|ENST00000332690|TAS2R60	MSMS	A375_MHC_IP_R2	2	576.9719848632812	2	576.907559	1151.80057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.76	1	102.52	102.02	103.02	0.76428								0	0	0	0.15629	1	38570	38570		0.40072	0	1				60963	8704	44457	44808	59401	59401					0.23073764298442256
VTINMMVR	8	Unmodified	_VTINMMVR_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|2|1|sense	L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|2|1|sense	L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|2|1|sense	MULTI-MSMS	A375_MHC_IP_R2	2	482.6595458984375	2	482.259348	962.504143	-0.47232	-0.00022778	0.36092	0.00017406	-0.1114	-5.3723E-05	482.259560086893	84.511	0.81291	85.247	84.968	85.78	0.73601					29	15	3	0	0	0	0.69583	1	32113	32113		36.044	0	1	4048000			60964	14276	44458	44809	59402	59402					0.02139075527611567
VTINMMVR	8	Unmodified	_VTINMMVR_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|2|1|sense	L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|2|1|sense	L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|2|1|sense	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	482.259348	962.504143	-0.47232	-0.00022778	0.36092	0.00017406	-0.1114	-5.3723E-05	482.259560086893	84.511	0.81291	85.247	84.968	85.78	0.73601	-0.031216	-0.00031543	NaN	36.044	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4048000			60965	14276	44458	44809							0.02139075527611567
VTINQANTI	9	Unmodified	_VTINQANTI_					0	0	0			REV__ENST00000558439.5_1_15:51226794-51242057:+|nuORF	REV__ENST00000558439.5_1_15:51226794-51242057:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	487.6689453125	2	487.269281	972.52401	-0.89695	-0.00043706	-0.047489	-2.314E-05	-0.94444	-0.0004602	487.2693340403918	38.726	0.50959	39.501	39.25	39.76	0.77451					21	9	3	0	0	0	0.24324	1	14277	14277		38.176	0	1	4032300	+		60966	16763	44459	44810	59403	59403					0.03664866063570571
VTIRELPHLY	10	Unmodified	_VTIRELPHLY_					0	0	0		tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1	tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1	tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1	MSMS	A375_MHC_IP_R2	2	620.85595703125	2	620.856055	1239.69756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.659	1	100.42	99.922	100.92	0.76278								0	0	0	0.1552	1	37802	37802		3.9444	0	1				60967	29762	44460	44811	59404	59404					0.08729651839871622
VTIRKGFFF	9	Unmodified	_VTIRKGFFF_					0	0	0		ENST00000570267.2_1_16:89283339-89283555:-|nuORF	ENST00000570267.2_1_16:89283339-89283555:-|nuORF	ENST00000570267.2_1_16:89283339-89283555:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	372.6181335449219	3	372.218443	1113.6335	0.5546	0.00020643	-0.53595	-0.00019949	0.018649	6.9415E-06	372.21812575576024	79.16	0.50678	79.904	79.642	80.149	0.74474					22	9	3	0	0	0	0.7235	1	30041	30041		4.897	0.36815	1	3920200			60968	13602	44461	44812	59405	59405					0.0812291647357597
VTIRKIIVVL	10	Unmodified	_VTIRKIIVVL_					0	0	0		ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENST00000423695.6_1_5:10250480-10261980:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	576.6907348632812	2	577.405184	1152.79581	-0.015084	-8.7095E-06	1.6094	0.0009293	1.5944	0.00092059	577.9067731158823	85.454	0.20475	86.19	86.034	86.239	0.73602					5	3	2	0	0	0	0.93615	1	32450	32450		0.40072	0	1	465770			60969	11762	44462	44813	59406	59406					0.22552880155717503
VTISRGRV	8	Unmodified	_VTISRGRV_					0	0	0		ENSG00000157851|ENST00000288699|DPYSL5	ENSG00000157851|ENST00000288699|DPYSL5	ENSG00000157851|ENST00000288699|DPYSL5	MULTI-SECPEP	A375_MHC_IP_R1	1	444.6748352050781	2	444.274701	886.534849	-0.24861	-0.00011045	-0.18019	-8.0053E-05	-0.42879	-0.0001905	444.274562980772	31.002	0.5079	31.002	30.754	31.262	0					19	9	3	0	0	0	0.96266	1	9912	9912		3.9444	1.8846	1	4122700			60970	6271	44463	44814	59407	59407					0.08704313228531646
VTISYPSGIP	10	Unmodified	_VTISYPSGIP_					0	0	0		ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	MULTI-SECPEP	A375_MHC_IP_R2	2	517.558837890625	2	517.281857	1032.54916	-0.67816	-0.0003508	0.16616	8.5951E-05	-0.512	-0.00026485	517.2819943224617	88.53	0.70985	89.262	88.925	89.635	0.7318					19	13	2	0	0	0	0.85226	1	33810	33810		20.454	0	1	1276900			60971	2891	44464	44815	59408	59408					0.03418920866147346
VTITDPFKHF	10	Unmodified	_VTITDPFKHF_					0	0	0		nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN	nc|ENSG00000125868|P60981-2|DSTN	nc|ENSG00000125868|P60981-2|DSTN	MULTI-MSMS	A375_MHC_IP_R1	1	402.6167907714844	3	402.21688	1203.62881	-0.36048	-0.00014499	0.46997	0.00018903	0.10949	4.4038E-05	402.21709548819416	74.581	0.50687	74.581	74.247	74.754	0					21	9	3	0	0	0	0.21149	1	27166	27166		48.073	10.301	1	3684500			60972	4001	44465	44816	59409	59409					0.035139875401455356
VTITDPFKHF	10	Unmodified	_VTITDPFKHF_					0	0	0		nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN	nc|ENSG00000125868|P60981-2|DSTN	nc|ENSG00000125868|P60981-2|DSTN	MULTI-SECPEP	A375_MHC_IP_R2	2	402.6168518066406	3	402.21688	1203.62881	0.029444	1.1843E-05	-0.013228	-5.3207E-06	0.016216	6.5223E-06	402.2168220138399	73.744	0.56147	74.479	74.243	74.805	0.73541					21	10	3	0	0	0	0.50381	1	27980	27980		35.08	9.0823	1	3564500			60973	4001	44465	44816	59410	59410					0.035139875401455356
VTITGAVAAV	10	Unmodified	_VTITGAVAAV_					0	0	0			REV__ENSG00000099715|ENST00000698851|PCDH11Y	REV__ENSG00000099715|ENST00000698851|PCDH11Y	MULTI-MSMS	A375_MHC_IP_R2	2	451.6711730957031	2	451.271293	900.528032	-0.29185	-0.0001317	-0.062066	-2.8009E-05	-0.35391	-0.00015971	451.27121968130865	48.533	0.60832	49.29	48.98	49.588	0.75737					18	11	2	0	0	0	0.17045	1	18215	18215		52.268	8.4101	1	5982400	+		60974	17021	44466	44817	59411	59411					0.07378955557271638
VTITGSAASI	10	Unmodified	_VTITGSAASI_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;ENST00000437262.1_1_21:40543078-40543174:-|nuORF;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-7|PCBP2	ENSG00000169564|ENST00000303577|PCBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	460.6578369140625	2	460.258382	918.502212	-0.44536	-0.00020498	-0.071905	-3.3095E-05	-0.51726	-0.00023807	460.2583228409757	31.435	0.45961	32.153	31.923	32.383	0.71857					15	8	2	0	0	0	0.74754	1	11092	11092		29.082	5.061	1	8088600			60975	7414;9115	44467	44818	59412	59412					0.03970061314987561
VTITPTRW	8	Unmodified	_VTITPTRW_					0	0	0		ENST00000226522.8_1_4:100805248-100808497:-|nuORF	ENST00000226522.8_1_4:100805248-100808497:-|nuORF	ENST00000226522.8_1_4:100805248-100808497:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	487.6761474609375	2	487.276909	972.539266	-0.9208	-0.00044869	-0.2436	-0.0001187	-1.1644	-0.00056739	487.27673765853706	58.578	0.45804	59.326	59.083	59.542	0.74894					16	8	2	0	0	0	0.88903	1	22142	22142		24.021	3.5669	1	3173700			60976	10121	44468	44819	59413	59413					0.051897776514124416
VTITTRSGKY	10	Unmodified	_VTITTRSGKY_					0	0	0		nc|ENSG00000127329|P23467-4|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB;ENSG00000127329|ENST00000334414|PTPRB	nc|ENSG00000127329|P23467-4|PTPRB	nc|ENSG00000127329|P23467-4|PTPRB	MULTI-SECPEP	A375_MHC_IP_R1	1	563.7156982421875	2	563.316763	1124.61897	-0.67094	-0.00037795	-0.17537	-9.8786E-05	-0.8463	-0.00047674	563.3165647984011	90.629	0.50948	90.629	90.387	90.896	0					16	9	2	0	0	0	0.92227	1	33299	33299		8.7454	3.4485	1	1118300			60977	4083	44469	44820	59414	59414					0.06164799534781196
VTKAALGP	8	Unmodified	_VTKAALGP_					0	0	0		ENST00000525556.1_1_8:61878844-61880304:-|nuORF	ENST00000525556.1_1_8:61878844-61880304:-|nuORF	ENST00000525556.1_1_8:61878844-61880304:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	759.9349365234375	1	756.461416	755.454139	-0.5089	-0.00038496	-0.14636	-0.00011072	-0.65526	-0.00049568	756.4612401403574	99.747	0.85667	99.747	99.422	100.28	0					39	16	4	0	0	0	0.7773	1	36586	36586		4.756	0	1	39544000			60978	13072	44470	44821	59415	59415					0.06663032185599604
VTKCGRLRH	9	Unmodified	_VTKCGRLRH_					0	0	0		ENSG00000107371|ENST00000327304|EXOSC3;nc|ENSG00000107371|Q9NQT5-2|EXOSC3	ENSG00000107371|ENST00000327304|EXOSC3	ENSG00000107371|ENST00000327304|EXOSC3	MULTI-MSMS	A375_MHC_IP_R1	1	357.6060485839844	3	357.206432	1068.59747	-0.17706	-6.3249E-05	-0.80487	-0.0002875	-0.98193	-0.00035075	357.2060708511246	24.148	0.65949	24.148	23.838	24.498	0					13	12	2	0	0	0	0.64971	1	6834	6834		11.495	0	1	6303200			60979	2737	44471	44822	59416	59416					0.06591136025031119
VTKDGRVFAW	10	Unmodified	_VTKDGRVFAW_					0	0	0		nc|ENSG00000180198|P18754-2|RCC1;ENSG00000180198|ENST00000683442|RCC1	nc|ENSG00000180198|P18754-2|RCC1	nc|ENSG00000180198|P18754-2|RCC1	MULTI-MSMS	A375_MHC_IP_R1	1	393.90386962890625	3	393.548741	1177.62439	0.01866	7.3435E-06	0.086521	3.405E-05	0.10518	4.1394E-05	393.54874959010255	52.461	0.60863	52.461	52.085	52.694	0					35	11	5	0	0	0	0.21482	2	18650	18614;18650		42.068	25.072	1	16575000			60980	8281	44472	44823	59417;59418	59418					0.04268523117229961
VTKDGRVFAW	10	Unmodified	_VTKDGRVFAW_					0	0	0		nc|ENSG00000180198|P18754-2|RCC1;ENSG00000180198|ENST00000683442|RCC1	nc|ENSG00000180198|P18754-2|RCC1	nc|ENSG00000180198|P18754-2|RCC1	MULTI-MSMS	A375_MHC_IP_R2	2	393.9485168457031	3	393.548741	1177.62439	-0.4052	-0.00015947	-0.018725	-7.3693E-06	-0.42392	-0.00016683	393.5487465110093	51.548	0.60913	52.3	52.068	52.677	0.75225					32	11	4	0	0	0	0.2515	1	19384	19384		44.945	26.572	1	21841000			60981	8281	44472	44823	59419	59419					0.04268523117229961
VTKDLTRLKT	10	Unmodified	_VTKDLTRLKT_					0	0	0		ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ;ENST00000580662.5_1_17:65186450-65214920:-|nuORF;ENST00000584641.5_1_17:65197178-65214920:-|nuORF	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MULTI-MSMS	A375_MHC_IP_R2	2	1175.1153564453125	1	1174.7154	1173.70812	0.35776	0.00042027	-0.71837	-0.00084388	-0.3606	-0.00042361	1174.7145035382036	145.3	0.26804	145.32	145.17	145.44	0.021408					27	17	2	0	0	0	0.72747	1	56732	56732		0	0	1	168340			60982	9248	44473	44824	59420	59420					0.12821634494230238
VTKDMFIME	9	Unmodified	_VTKDMFIME_					0	0	0		ENSG00000116218|ENST00000367615|NPHS2	ENSG00000116218|ENST00000367615|NPHS2	ENSG00000116218|ENST00000367615|NPHS2	MSMS	A375_MHC_IP_R1	1	557.2136840820312	2	557.269578	1112.5246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.606	1	60.606	60.106	61.106	0								0	0	0	0.15142	1	21822	21822		19.257	6.7254	1				60983	3387	44474	44825	59421	59421					-0.02715798603253461
VTKDVHENII	10	Unmodified	_VTKDVHENII_					0	0	0			REV__ENSG00000137501|ENST00000359152|SYTL2	REV__ENSG00000137501|ENST00000359152|SYTL2	MULTI-SECPEP	A375_MHC_IP_R1	1	389.932861328125	3	389.883789	1166.62954	0.26775	0.00010439	0.094028	3.666E-05	0.36177	0.00014105	389.8837188498206	37.561	0.35893	37.561	37.402	37.761	0					10	6	2	0	0	0	0.93041	1	12745	12745		7.9454	0	1	1684800	+		60984	19015	44475	44826	59422	59422					0.05288782189199992
VTKEKELF	8	Unmodified	_VTKEKELF_					0	0	0		nc|ENSG00000155016|Q7Z449-2|CYP2U1;ENST00000513302.1_1_4:108852745-108856764:+|nuORF	nc|ENSG00000155016|Q7Z449-2|CYP2U1	nc|ENSG00000155016|Q7Z449-2|CYP2U1	MULTI-SECPEP	A375_MHC_IP_R2	2	497.19232177734375	2	497.2844	992.554247	-0.40092	-0.00019937	-0.64264	-0.00031957	-1.0436	-0.00051894	497.2843909139581	79.513	0.40766	80.257	80.098	80.505	0.74474					11	7	2	0	0	0	0.69122	1	30230	30230		48.346	0	1	885880			60985	12928	44476	44827	59423	59423					0.05767224728765541
VTKEPPEEEKV	11	Unmodified	_VTKEPPEEEKV_					0	0	0			REV__ENST00000552207.1_1_12:56188062-56211500:-|nuORF	REV__ENST00000552207.1_1_12:56188062-56211500:-|nuORF	MSMS	A375_MHC_IP_R2	2	642.92041015625	2	642.837725	1283.6609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.21	1	108.96	108.46	109.46	0.75436								0	0	0	0.16138	1	40865	40865		11.495	3.3392	1		+		60986	26051	44477	44828	59424	59424					0.030413104325816676
VTKFCLFCF	9	Unmodified	_VTKFCLFCF_					0	0	0		ENSG00000135226|ENST00000335568|UGT2B28	ENSG00000135226|ENST00000335568|UGT2B28	ENSG00000135226|ENST00000335568|UGT2B28	MSMS	A375_MHC_IP_R1	1	369.7729797363281	3	369.850375	1106.52929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.034	1	19.034	18.534	19.534	0								0	0	0	0.15486	1	4579	4579		0.26902	0	1				60987	4658	44478	44829	59425	59425					-0.019708696698444328
VTKGKIFIEW	10	Unmodified	_VTKGKIFIEW_					0	0	0		ENST00000481284.5_1_20:33462930-33515014:+|nuORF;ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2;ENST00000461051.1_1_20:33463718-33470793:+|nuORF;ENST00000497927.5_1_20:33462930-33496606:+|nuORF;ENST00000476922.5_1_20:33464445-33514898:+|nuORF	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	407.97265625	3	407.572775	1219.69649	0.027867	1.1358E-05	0.22289	9.0842E-05	0.25075	0.0001022	407.9071967781918	70.133	0.56142	70.133	69.933	70.494	0					18	10	2	0	0	0	0.81532	1	25457	25457		21.799	11	1	4387500			60988	4308	44479	44830	59426	59426					0.09543437470938443
VTKGKIFIEW	10	Unmodified	_VTKGKIFIEW_					0	0	0		ENST00000481284.5_1_20:33462930-33515014:+|nuORF;ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2;ENST00000461051.1_1_20:33463718-33470793:+|nuORF;ENST00000497927.5_1_20:33462930-33496606:+|nuORF;ENST00000476922.5_1_20:33464445-33514898:+|nuORF	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	611.22412109375	2	610.855524	1219.69649	-0.088328	-5.3956E-05	-0.32948	-0.00020126	-0.41781	-0.00025522	610.8552368300553	70.192	0.30568	70.192	69.983	70.289	0					8	5	2	0	0	0	0.92076	1	25423	25423		10.151	2.8613	1	1126100			60989	4308	44479	44830	59427	59427					0.09543437470938443
VTKGKIFIEW	10	Unmodified	_VTKGKIFIEW_					0	0	0		ENST00000481284.5_1_20:33462930-33515014:+|nuORF;ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2;ENST00000461051.1_1_20:33463718-33470793:+|nuORF;ENST00000497927.5_1_20:33462930-33496606:+|nuORF;ENST00000476922.5_1_20:33464445-33514898:+|nuORF	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	407.97265625	3	407.572775	1219.69649	0.11236	4.5793E-05	-0.34353	-0.00014001	-0.23117	-9.4219E-05	407.5726417323258	69.272	0.40454	70.006	69.829	70.233	0.73421					18	7	3	0	0	0	0.65106	1	26254	26254		17.049	4.821	1	5710900			60990	4308	44479	44830	59428	59428					0.09543437470938443
VTKGRLTKKI	10	Unmodified	_VTKGRLTKKI_					0	0	0			REV__nc|ENSG00000121270|Q96J66-2|ABCC11	REV__nc|ENSG00000121270|Q96J66-2|ABCC11	MSMS	A375_MHC_IP_R2	2	381.95703125	3	381.923919	1142.74993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.359	1	52.111	51.611	52.611	0.75225								0	0	0	0.15486	1	19326	19326		5.0475	0.85802	1		+		60991	18153	44480	44831	59429	59429					0.18426234973458122
VTKHGRLA	8	Unmodified	_VTKHGRLA_					0	0	0			REV__NLRP2|p.L747F|1|0.23|ENSG00000022556|chr19:54986188-54986188|C/T|missense_variant	REV__NLRP2|p.L747F|1|0.23|ENSG00000022556|chr19:54986188-54986188|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	441.67626953125	2	441.269419	880.524284	0.00084355	3.7223E-07	-0.36031	-0.00015899	-0.35947	-0.00015862	441.26921432199873	51.278	0.45649	51.278	51.068	51.525	0					10	8	2	0	0	0	0.7256	1	18177	18177		26.884	1.4843	1	817950	+		60992	16271	44481	44832	59430	59430					0.07924330574076066
VTKHSTLLSVP	11	Unmodified	_VTKHSTLLSVP_					0	0	0		ENSG00000183783|ENST00000360029|KCTD8	ENSG00000183783|ENST00000360029|KCTD8	ENSG00000183783|ENST00000360029|KCTD8	MULTI-SECPEP	A375_MHC_IP_R2	2	591.5911865234375	2	591.348063	1180.68157	-0.37578	-0.00022222	0.087884	5.197E-05	-0.28789	-0.00017025	591.3479742041211	142.98	0.86258	143.01	142.48	143.34	0.030731					48	16	4	0	0	0	0.99921	1	55917	55917		1.3295	0	1	14288000			60993	8529	44482	44833	59431	59431					0.09845945602955908
VTKIAKEKKKI	11	Unmodified	_VTKIAKEKKKI_					0	0	0			REV__CCDC93|p.R161K|1|0.3|ENSG00000125633|chr2:117995483-117995483|C/T|missense_variant	REV__CCDC93|p.R161K|1|0.3|ENSG00000125633|chr2:117995483-117995483|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	643.5099487304688	2	643.43193	1284.84931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.622	1	83.622	83.122	84.122	0								0	0	0	0.16334	1	30603	30603		1.3295	0	1		+		60994	15601	44483	44834	59432	59432					0.21827632867552893
VTKIFQKKKI	10	Unmodified	_VTKIFQKKKI_					0	0	0		ENSG00000124313|ENST00000642864|IQSEC2;nc|ENSG00000124313|Q5JU85-3|IQSEC2	ENSG00000124313|ENST00000642864|IQSEC2	ENSG00000124313|ENST00000642864|IQSEC2	MULTI-SECPEP	A375_MHC_IP_R1	1	617.3106079101562	2	616.908091	1231.80163	-0.39368	-0.00024287	2.8712	0.0017713	2.4775	0.0015284	617.4109234440729	125.35	0.20113	125.35	125.25	125.45	0					5	3	2	0	0	0	0.94598	1	47691	47691		1.3295	0	1	16923000			60995	3893	44484	44835	59433	59433					0.19499978667363393
VTKKKEEKL	9	Unmodified	_VTKKKEEKL_					0	0	0			REV__GUCY1A2|p.E484K|1|0.23|ENSG00000152402|chr11:106810235-106810235|C/T|missense_variant	REV__GUCY1A2|p.E484K|1|0.23|ENSG00000152402|chr11:106810235-106810235|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	552.2447509765625	2	551.845156	1101.67576	-0.65023	-0.00035883	-0.19642	-0.00010839	-0.84665	-0.00046722	551.8451250274732	84.916	0.51212	85.652	85.472	85.984	0.73601					17	9	3	0	0	0	0.74412	1	32305	32305		14.838	1.7958	1	2407100	+		60996	26721	44485	44836	59434	59434					0.1289884709128728
VTKKKKIGKK	10	Unmodified	_VTKKKKIGKK_					0	0	0		ENSG00000116786|ENST00000375799|PLEKHM2;nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	ENSG00000116786|ENST00000375799|PLEKHM2	ENSG00000116786|ENST00000375799|PLEKHM2	MSMS	A375_MHC_IP_R2	2	579.4082641601562	2	579.408258	1156.80196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.58	1	117.24	116.74	117.74	0.65962								0	0	0	0.15629	1	44062	44062		0.40072	0.40072	1				60997	3432	44486	44837	59435	59435					0.22983398387214038
VTKKKKKKK	9	Unmodified	_VTKKKKKKK_					0	0	0		AluSz6_dup36815|chr15:60362892-60363058:+|1.3026560341287117|0.0012375329650786|10.04|472.0|5|2|sense	AluSz6_dup36815|chr15:60362892-60363058:+|1.3026560341287117|0.0012375329650786|10.04|472.0|5|2|sense	AluSz6_dup36815|chr15:60362892-60363058:+|1.3026560341287117|0.0012375329650786|10.04|472.0|5|2|sense	MULTI-SECPEP	A375_MHC_IP_R2	2	558.5548095703125	2	558.402976	1114.7914	-0.4743	-0.00026485	4.0712	0.0022733	3.5969	0.0020085	558.4049494588767	99.546	0.25418	100.31	100.17	100.42	0.76278					5	4	2	0	0	0	0.81363	1	37712	37712		1.8442	0	1	678590			60998	119	44487	44838	59436	59436					0.23859415732772504
VTKKKKKKKK	10	Unmodified	_VTKKKKKKKK_					0	0	0		AluSz6_dup36815|chr15:60362892-60363058:+|1.3026560341287117|0.0012375329650786|10.04|472.0|5|2|sense	AluSz6_dup36815|chr15:60362892-60363058:+|1.3026560341287117|0.0012375329650786|10.04|472.0|5|2|sense	AluSz6_dup36815|chr15:60362892-60363058:+|1.3026560341287117|0.0012375329650786|10.04|472.0|5|2|sense	MSMS	A375_MHC_IP_R2	2	622.4653930664062	2	622.450457	1242.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.977	1	91.712	91.212	92.212	0.7345								0	0	0	0.15591	1	34615	34615		1.6526	0	1				60999	119	44488	44839	59437	59437					0.27463349203958387
VTKKKKKKQH	10	Unmodified	_VTKKKKKKQH_					0	0	0		ENSG00000129518|ENST00000250454|EAPP	ENSG00000129518|ENST00000250454|EAPP	ENSG00000129518|ENST00000250454|EAPP	MSMS	A375_MHC_IP_R2	2	626.6929321289062	2	626.914239	1251.81392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.167	1	80.911	80.411	81.411	0.74474								0	0	0	0.15591	1	30434	30434		1.6526	0.32309	1				61000	4195	44489	44840	59438	59438					0.19809015130408625
VTKKKKKQKRR	11	Unmodified	_VTKKKKKQKRR_					0	0	0			REV__ENST00000351842.8_1_3:49315538-49315709:-|nuORF	REV__ENST00000351842.8_1_3:49315538-49315709:-|nuORF	MSMS	A375_MHC_IP_R1	1	714.79833984375	2	714.485894	1426.95723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.65	1	131.65	131.15	132.15	0								0	0	0	0.16354	1	50758	50758		0.30703	0	1		+		61001	23797	44490	44841	59439	59439					0.26083442241474586
VTKKKTQVSL	10	Unmodified	_VTKKKTQVSL_					0	0	0			REV__ENST00000559816.1_1_15:50534459-50545113:-|nuORF	REV__ENST00000559816.1_1_15:50534459-50545113:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	377.97308349609375	3	377.908046	1130.70231	0.063866	2.4135E-05	-0.40969	-0.00015483	-0.34583	-0.00013069	377.90774377536235	40.42	0.50924	41.194	40.98	41.489	0.77451					15	9	2	0	0	0	0.71175	1	14984	14984		7.0371	0	1	2494400	+		61002	19199	44491	44842	59440	59440					0.14218535982604408
VTKKPLYDVE	10	Unmodified	_VTKKPLYDVE_					0	0	0		tr|U7STU3|U7STU3_FUSNUSpermidine/putrescinetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01188PE=4SV=1	tr|U7STU3|U7STU3_FUSNUSpermidine/putrescinetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01188PE=4SV=1	tr|U7STU3|U7STU3_FUSNUSpermidine/putrescinetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01188PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	398.291748046875	3	397.892173	1190.65469	0.14597	5.8081E-05	0.48106	0.00019141	0.62703	0.00024949	397.89236510059953	21.865	0.61027	21.865	21.352	21.962	0					15	11	2	0	0	0	0.69833	1	5791	5791		11.518	3.5725	1	3394100			61003	29713	44492	44843	59441	59441					0.06698836991745338
VTKKRRRKKKK	11	Unmodified	_VTKKRRRKKKK_					0	0	0			REV__ENST00000428417.5_1_1:15546837-15546969:+|nuORF	REV__ENST00000428417.5_1_1:15546837-15546969:+|nuORF	MSMS	A375_MHC_IP_R1	1	728.5099487304688	2	728.507161	1454.99977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.836	1	71.836	71.336	72.336	0								0	0	0	0.16334	1	26115	26115		1.3295	1.3295	1		+		61004	24676	44493	44844	59442	59442					0.2904683736969673
VTKKRSRII	9	Unmodified	_VTKKRSRII_					0	0	0			REV__ENSG00000152034|ENST00000281806|MCHR2	REV__ENSG00000152034|ENST00000281806|MCHR2	MSMS	A375_MHC_IP_R1	1	367.5928649902344	3	367.580264	1099.71896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.077	1	31.077	30.577	31.577	0								0	0	0	0.15253	1	9931	9931		17.443	6.6431	1		+		61005	19786	44494	44845	59443	59443					0.17309081659232106
VTKKTYEIW	9	Unmodified	_VTKKTYEIW_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-SECPEP	A375_MHC_IP_R1	1	583.6436157226562	2	584.324057	1166.63356	-0.10341	-6.0423E-05	-0.29271	-0.00017104	-0.39611	-0.00023146	584.3239306857823	43.352	0.50862	43.352	43.095	43.603	0					23	9	3	0	0	0	0.31976	1	15041	15041		33.445	19.04	1	11396000			61006	3005	44495	44846	59444	59444					0.05690871682895704
VTKKTYEIW	9	Unmodified	_VTKKTYEIW_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	A375_MHC_IP_R2	2	390.2850036621094	3	389.88513	1166.63356	-0.10197	-3.9756E-05	0.0097824	3.814E-06	-0.092187	-3.5942E-05	389.8851151509417	42.443	0.764	43.216	42.809	43.573	0.7724					39	14	4	0	0	0	0.18338	1	15764	15764		39.213	0.59825	1	27127000			61007	3005	44495	44846	59445	59445					0.05690871682895704
VTKKTYEIW	9	Unmodified	_VTKKTYEIW_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-SECPEP	A375_MHC_IP_R2	2	584.7238159179688	2	584.324057	1166.63356	-0.39431	-0.00023041	-0.24662	-0.00014411	-0.64094	-0.00037451	584.3238630720367	42.477	0.45836	43.249	43.014	43.472	0.7724					22	8	3	0	0	0	0.35788	1	15768	15768		61.09	32.008	1	11304000			61008	3005	44495	44846	59446	59446					0.05690871682895704
VTKKTYEIW	9	Unmodified	_VTKKTYEIW_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	389.88513	1166.63356	0.31681	0.00012352	-0.12472	-4.8626E-05	0.1921	7.4896E-05	389.88504238339516	43.326	0.61142	43.326	43.043	43.655	0	0.054937	-8.4899E-05	NaN	39.213	38	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27186000			61009	3005	44495	44846							0.05690871682895704
VTKLLHAGFY	10	Unmodified	_VTKLLHAGFY_					0	0	0			REV__ENSG00000135519|ENST00000257981|KCNH3	REV__ENSG00000135519|ENST00000257981|KCNH3	MULTI-SECPEP	A375_MHC_IP_R1	1	384.2691345214844	3	383.553603	1147.63898	0.61874	0.00023732	0.31352	0.00012025	0.93226	0.00035757	383.5528088928939	21.961	0.15245	21.961	21.86	22.013	0					4	2	2	0	0	0	0.93961	1	5825	5825		0.56317	0	1	301100	+		61010	18859	44496	44847	59447	59447					0.07106595265372562
VTKLLSTV	8	Unmodified	_VTKLLSTV_					0	0	0			REV__ENSG00000171914|ENST00000636159|TLN2;REV__ENSG00000137076|ENST00000314888|TLN1	REV__ENSG00000137076|ENST00000314888|TLN1	MULTI-SECPEP	A375_MHC_IP_R1	1	431.1761779785156	2	430.776211	859.537869	-0.1125	-4.8462E-05	0.11069	4.7684E-05	-0.0018062	-7.7805E-07	430.77622406863634	57.241	0.66102	57.241	57.007	57.669	0					23	12	3	0	0	0	0.25204	1	20538	20538		81.89	10.757	1	4817700	+		61011	21108;18984	44497	44848	59448	59448					0.10248143562660061
VTKLLSTV	8	Unmodified	_VTKLLSTV_					0	0	0			REV__ENSG00000171914|ENST00000636159|TLN2;REV__ENSG00000137076|ENST00000314888|TLN1	REV__ENSG00000137076|ENST00000314888|TLN1	MULTI-SECPEP	A375_MHC_IP_R2	2	431.1756591796875	2	430.776211	859.537869	-0.50822	-0.00021893	-0.1574	-6.7804E-05	-0.66562	-0.00028673	430.77606708128116	56.276	0.51043	57.026	56.745	57.255	0.75015					22	9	3	0	0	0	0.25204	1	21256	21256		71.922	17.149	1	5672100	+		61012	21108;18984	44497	44848	59449	59449					0.10248143562660061
VTKNLQKFL	9	Unmodified	_VTKNLQKFL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R1	1	364.610595703125	3	364.225486	1089.65463	0.24137	8.7912E-05	0.022745	8.2842E-06	0.26411	9.6197E-05	364.22541625842166	53.428	2.5906	53.428	53.199	55.79	0					149	50	5	0	0	0	0.50355	2	19377	19377;19472		19.626	3.8278	1	305550000			61013	14788	44498	44849	59450;59451	59450					0.11338881782421595
VTKNLQKFL	9	Unmodified	_VTKNLQKFL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R2	2	364.6248779296875	3	364.225486	1089.65463	-0.46339	-0.00016878	0.083235	3.0316E-05	-0.38015	-0.00013846	364.2254580666357	52.407	3.6089	53.159	52.882	56.491	0.75225					145	70	6	0	0	0	0.37338	1	20198	20198		26.021	3.3626	1	412670000			61014	14788	44498	44849	59452	59452					0.11338881782421595
VTKNTKNLGWY	11	Unmodified	_VTKNTKNLGWY_					0	0	0			REV__ENST00000396020.7_1_14:50043976-50044102:-|nuORF	REV__ENST00000396020.7_1_14:50043976-50044102:-|nuORF	MSMS	A375_MHC_IP_R1	1	662.7360229492188	2	662.356419	1322.69829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.68	1	102.68	102.18	103.18	0								0	0	0	0.16265	1	37735	37735		4.897	0.95262	1		+		61015	24334	44499	44850	59453	59453					0.049844464889019946
VTKQIALALR	10	Unmodified	_VTKQIALALR_					0	0	0		ENSG00000089022|ENST00000550735|MAPKAPK5;nc|ENSG00000089022|Q8IW41|MAPKAPK5	ENSG00000089022|ENST00000550735|MAPKAPK5	ENSG00000089022|ENST00000550735|MAPKAPK5	MULTI-MSMS	A375_MHC_IP_R1	1	1113.114501953125	1	1112.715	1111.70773	-0.28141	-0.00031313	-0.11052	-0.00012298	-0.39194	-0.00043611	1112.7145773092352	149.54	1.8404	149.54	148.16	150	0					126	59	3	0	0	0	0.72747	1	57028	57028		0	0	1	651830			61016	1908	44500	44851	59454	59454					0.1563425956503579
VTKQLVSDL	9	Unmodified	_VTKQLVSDL_					0	0	0			REV__ENSG00000051341|ENST00000264233|POLQ	REV__ENSG00000051341|ENST00000264233|POLQ	MULTI-SECPEP	A375_MHC_IP_R2	2	501.2058410644531	2	501.795132	1001.57571	-1.0962	-0.00055009	-0.11692	-5.8672E-05	-1.2132	-0.00060876	501.79489213707166	53.576	1.1743	54.327	53.995	55.169	0.75105					56	22	4	0	0	0	0.65246	1	20154	20154		10.824	0	1	18121000	+		61017	16391	44501	44852	59455	59455					0.07498609757453778
VTKRIKKLSY	10	Unmodified	_VTKRIKKLSY_					0	0	0			REV__TTC21A|p.E103K|1|0.33|ENSG00000168026|chr3:39110889-39110889|G/A|missense_variant	REV__TTC21A|p.E103K|1|0.33|ENSG00000168026|chr3:39110889-39110889|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	618.7240600585938	2	618.395348	1234.77614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.39	1	68.126	67.626	68.626	0.73631								0	0	0	0.1552	1	25531	25531		3.9444	0	1		+		61018	28921	44502	44853	59456	59456					0.16814504144963394
VTKRLKEHI	9	Unmodified	_VTKRLKEHI_					0	0	0		ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	MSMS	A375_MHC_IP_R2	2	562.4091186523438	2	562.35094	1122.68733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.6	1	143.63	143.13	144.13	0.024414								0	0	0	0.15486	1	56117	56117		4.3292	0	1				61019	5021	44503	44854	59457	59457					0.13089088905280732
VTKSPAPVH	9	Unmodified	_VTKSPAPVH_					0	0	0		nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1;ENSG00000184708|ENST00000330125|EIF4ENIF1;nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1;ENST00000487671.1_1_22:31840579-31845472:-|nuORF	nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1	nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1	MULTI-SECPEP	A375_MHC_IP_R2	2	468.6689453125	2	468.269084	934.523616	-0.73257	-0.00034304	0.44051	0.00020628	-0.29206	-0.00013676	468.26919298747754	40.552	0.40733	41.327	41.082	41.489	0.77451					12	7	2	0	0	0	0.60917	1	15046	15046		19.257	11.347	1	2806400			61020	8605	44504	44855	59458	59458					0.05373491134366759
VTKSSKKS	8	Unmodified	_VTKSSKKS_					0	0	0		nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	MULTI-SECPEP	A375_MHC_IP_R1	1	433.1604919433594	2	432.761092	863.507631	-0.41311	-0.00017878	-0.64935	-0.00028101	-1.0625	-0.00045979	432.76063976258905	132.85	0.56197	132.85	132.59	133.15	0					14	10	2	0	0	0	0.972	1	51266	51266		0.52476	0.066424	1	2990700			61021	7623	44505	44856	59459	59459					0.07041784897478465
VTKSSKKS	8	Unmodified	_VTKSSKKS_					0	0	0		nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	432.761092	863.507631	-0.19074	-8.2547E-05	-1.2939	-0.00055997	-1.4847	-0.00064251	432.76046848419526	132.65	0.55875	132.82	132.64	133.2	0.16487	-0.016723	-0.00024945	NaN	0.52476	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3631500			61022	7623	44505	44856							0.07041784897478465
VTKSSTSV	8	Unmodified	_VTKSSTSV_					0	0	0			REV__ENST00000471188.5_1_7:92887656-92969983:+|nuORF	REV__ENST00000471188.5_1_7:92887656-92969983:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	405.13079833984375	2	404.724175	807.433798	-0.42516	-0.00017207	0.50246	0.00020336	0.077301	3.1286E-05	404.7244004529384	100.29	0.55734	100.29	100.03	100.58	0					20	10	2	0	0	0	0.77028	1	36835	36835		14.838	0	1	1832400	+		61023	16099	44506	44857	59460	59460					0.02237816735157594
VTKTDQDLY	9	Unmodified	_VTKTDQDLY_					0	0	0		ENST00000531050.5_1_6:128321419-128718758:-|nuORF;nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK;PTPRK|p.R269C|1|0.64|ENSG00000152894|chr6:128218985-128218985|G/A|missense_variant;ENST00000524534.5_1_6:128384662-128841530:-|nuORF;ENST00000524481.5_1_6:128321419-128841710:-|nuORF	ENST00000531050.5_1_6:128321419-128718758:-|nuORF;ENST00000524481.5_1_6:128321419-128841710:-|nuORF	ENST00000531050.5_1_6:128321419-128718758:-|nuORF	MSMS	A375_MHC_IP_R2	2	541.61083984375	2	541.771854	1081.52915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.944	1	94.689	94.189	95.189	0.74474								0	0	0	0.15486	1	35708	35708		12.532	0	1				61024	13164;13057	44507	44858	59461	59461					-0.008348748644721127
VTKTKVITA	9	Unmodified	_VTKTKVITA_					0	0	0		tr|U7SJ05|U7SJ05_FUSNUPolymer-formingcytoskeletalproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02298PE=4SV=1;tr|U7SFZ5|U7SFZ5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02295PE=4SV=1	tr|U7SJ05|U7SJ05_FUSNUPolymer-formingcytoskeletalproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02298PE=4SV=1	tr|U7SJ05|U7SJ05_FUSNUPolymer-formingcytoskeletalproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02298PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	481.2072448730469	2	480.808042	959.601532	-0.75216	-0.00036164	-0.21614	-0.00010392	-0.96829	-0.00046556	480.80759533815444	147.87	0.21875	147.87	147.78	148	0					14	8	2	0	0	0	0.81896	1	56505	56505		0	0	1	139410			61025	29400	44508	44859	59462	59462					0.12011503999735851
VTKTSVAPKY	10	Unmodified	_VTKTSVAPKY_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R2	2	364.5985412597656	3	365.213246	1092.61791	-0.47334	-0.00017287	0.45246	0.00016524	-0.02088	-7.6257E-06	365.2133293804959	33.621	0.45479	34.373	34.196	34.651	0.75225					15	8	2	0	0	0	0.90513	1	12021	12021		10.899	0.58372	1	2905400	+		61026	19932	44509	44860	59463	59463					0.0753058516584133
VTKTVSNDSF	10	Unmodified	_VTKTVSNDSF_					0	0	0		ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1	ENSG00000187109|ENST00000618691|NAP1L1	ENSG00000187109|ENST00000618691|NAP1L1	MULTI-SECPEP	A375_MHC_IP_R2	2	549.6768798828125	2	549.277303	1096.54005	-1.1885	-0.00065283	-0.57911	-0.00031809	-1.7676	-0.00097092	549.2767065395371	26.252	0.3548	26.912	26.703	27.058	0.65992					12	6	3	0	0	0	0.157	1	8881	8881		70.929	29.089	1	3562700			61027	8806	44510	44861	59464	59464					-0.0043547249019866285
VTKVIPKVPS	10	Unmodified	_VTKVIPKVPS_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-SECPEP	A375_MHC_IP_R2	2	534.6657104492188	2	534.344792	1066.67503	-1.1597	-0.00061967	-0.047868	-2.5578E-05	-1.2075	-0.00064525	534.344619291087	56.549	0.40789	57.299	57.051	57.459	0.75015					13	7	3	0	0	0	0.93799	1	21313	21313		0.35063	0	1	2002300			61028	966	44511	44862	59465	59465					0.1443605244223818
VTKYYGSYLKS	11	Unmodified	_VTKYYGSYLKS_					0	0	0		ENST00000481288.1_1_13:99161185-99171658:-|nuORF	ENST00000481288.1_1_13:99161185-99171658:-|nuORF	ENST00000481288.1_1_13:99161185-99171658:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	655.758056640625	2	654.845353	1307.67615	-0.74158	-0.00048562	0.24871	0.00016286	-0.49287	-0.00032275	654.8453832216699	87.224	0.70575	87.957	87.662	88.368	0.733					27	13	3	0	0	0	0.72728	1	33124	33124		11.495	0.6952	1	6254100			61029	12512	44512	44863	59466	59466					0.0346222202044828
VTLAGLIQCFY	11	Unmodified	_VTLAGLIQCFY_					0	0	0			REV__ENSG00000125245|ENST00000397470|GPR18	REV__ENSG00000125245|ENST00000397470|GPR18	MSMS	A375_MHC_IP_R1	1	614.3370361328125	2	614.325742	1226.63693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.376	1	73.376	72.876	73.876	0								0	0	0	0.16108	1	26715	26715		13.042	2.2185	1		+		61030	18331	44513	44864	59467	59467					0.03267798465253691
VTLAQNNTEDF	11	Unmodified	_VTLAQNNTEDF_					0	0	0			REV__nc|ENSG00000114805|Q4KWH8-2|PLCH1	REV__nc|ENSG00000114805|Q4KWH8-2|PLCH1	MSMS	A375_MHC_IP_R2	2	626.298583984375	2	626.296224	1250.5779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.276	1	52.028	51.528	52.528	0.75225								0	0	0	0.16179	1	19294	19294		9.3831	1.473	1		+		61031	17842	44514	44865	59468	59468					-0.03737006295386891
VTLAQNNTEDF	11	Unmodified	_VTLAQNNTEDF_					0	0	0			REV__nc|ENSG00000114805|Q4KWH8-2|PLCH1	REV__nc|ENSG00000114805|Q4KWH8-2|PLCH1	MSMS	A375_MHC_IP_R2	2	626.3895263671875	2	626.296224	1250.5779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.478	1	52.23	51.73	52.73	0.75225								0	0	0	0.16179	1	19372	19372		9.3831	1.2276	1		+		61032	17842	44514	44865	59469	59469					-0.03737006295386891
VTLARWPGL	9	Unmodified	_VTLARWPGL_					0	0	0			REV__ENST00000340305.9_1_1:9662757-9662931:+|nuORF	REV__ENST00000340305.9_1_1:9662757-9662931:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	506.19744873046875	2	506.800552	1011.58655	-0.58634	-0.00029716	-0.68312	-0.00034621	-1.2695	-0.00064337	507.3013836792051	66.453	0.45961	66.453	66.224	66.684	0					11	8	2	0	0	0	0.52144	1	24093	24093		23.148	7.3012	1	761220	+		61033	23718	44515	44866	59470	59470					0.08122056922411502
VTLAWTPV	8	Unmodified	_VTLAWTPV_					0	0	0		nc|ENSG00000114270|Q02388-2|COL7A1;ENSG00000114270|ENST00000681320|COL7A1	nc|ENSG00000114270|Q02388-2|COL7A1	nc|ENSG00000114270|Q02388-2|COL7A1	MULTI-SECPEP	A375_MHC_IP_R2	2	443.1184997558594	2	443.755278	885.496004	-0.4499	-0.00019965	0.19729	8.755E-05	-0.25261	-0.0001121	443.75509129142364	80.817	0.81496	81.562	81.265	82.08	0.74474					18	15	2	0	0	0	0.88799	1	30712	30712		9.3474	0.75416	1	1219500			61034	3207	44516	44867	59471	59471					0.0486758787413919
VTLCKQFRCFP	11	Unmodified	_VTLCKQFRCFP_					0	0	0			REV__ENSG00000136931|ENST00000373588|NR5A1	REV__ENSG00000136931|ENST00000373588|NR5A1	MULTI-SECPEP	A375_MHC_IP_R2	2	448.29766845703125	3	447.898388	1340.67333	-0.12965	-5.807E-05	-0.89901	-0.00040266	-1.0287	-0.00046073	447.89788607676485	46.979	0.50901	47.741	47.513	48.022	0.76128					13	9	2	0	0	0	0.98711	1	17614	17614		9.5301	0	1	3834900	+		61035	18974	44517	44868	59472	59472					0.0166235209030674
VTLCTQQDIY	10	Unmodified	_VTLCTQQDIY_					0	0	0			REV__nc|ENSG00000170927|P08F94-2|PKHD1	REV__nc|ENSG00000170927|P08F94-2|PKHD1	MSMS	A375_MHC_IP_R2	2	592.2037963867188	2	592.286814	1182.55907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.5	1	116.19	115.69	116.69	0.68999								0	0	0	0.15332	1	43539	43539		10.074	0.6908	1		+		61036	21034	44518	44869	59473	59473					-0.024902591907675742
VTLDAKHDI	9	Unmodified	_VTLDAKHDI_					0	0	0			REV__GRIK3|p.A515T|1|0.44|ENSG00000163873|chr1:36825814-36825814|C/T|missense_variant	REV__GRIK3|p.A515T|1|0.44|ENSG00000163873|chr1:36825814-36825814|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	506.19744873046875	2	506.277106	1010.53966	-0.62116	-0.00031448	0.38478	0.0001948	-0.23638	-0.00011967	506.27733192891435	66.807	2.0841	66.807	65.871	67.955	0					78	40	5	0	0	0	0.16945	1	24093	24093		40.239	5.8375	1	68242000	+		61037	26711	44519	44870	59474	59474					0.034811525806162535
VTLDNHLYSL	10	Unmodified	_VTLDNHLYSL_					0	0	0		ENSG00000162873|ENST00000367155|KLHDC8A	ENSG00000162873|ENST00000367155|KLHDC8A	ENSG00000162873|ENST00000367155|KLHDC8A	MSMS	A375_MHC_IP_R2	2	587.7040405273438	2	587.808771	1173.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.007	1	90.739	90.239	91.239	0.7318								0	0	0	0.15332	1	34247	34247		10.074	0.6908	1				61038	6606	44520	44871	59475	59475					0.02313093297834712
VTLEALPKDV	10	Unmodified	_VTLEALPKDV_					0	0	0		ENSG00000167914|ENST00000301659|GSDMA	ENSG00000167914|ENST00000301659|GSDMA	ENSG00000167914|ENST00000301659|GSDMA	MULTI-SECPEP	A375_MHC_IP_R1	1	362.9689636230469	3	362.213135	1083.61758	-0.025339	-9.1782E-06	0.93728	0.0003395	0.91194	0.00033032	362.21353589398717	19.293	0.19003	19.293	19.23	19.42	0					7	4	2	0	0	0	0.86849	1	4788	4788		16.566	4.3911	1	57762000			61039	7236	44521	44872	59476	59476					0.07911165445989354
VTLEALPKDV	10	Unmodified	_VTLEALPKDV_					0	0	0		ENSG00000167914|ENST00000301659|GSDMA	ENSG00000167914|ENST00000301659|GSDMA	ENSG00000167914|ENST00000301659|GSDMA	MULTI-MATCH	A375_MHC_IP_R2	2		3	362.213135	1083.61758	-0.4051	-0.00014673	1.1083	0.00040143	0.70318	0.0002547	362.2135469009418	18.853	0.25997	19.456	19.423	19.683	0.60308	0.081555	0.00012076	NaN	16.566	18	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70860000			61040	7236	44521	44872							0.07911165445989354
VTLEDLRR	8	Unmodified	_VTLEDLRR_					0	0	0		nc|ENSG00000145242|P54756-3|EPHA5;nc|ENSG00000145242|P54756-2|EPHA5;ENSG00000145242|ENST00000613740|EPHA5;nc|ENSG00000145242|P54756|EPHA5	nc|ENSG00000145242|P54756-3|EPHA5	nc|ENSG00000145242|P54756-3|EPHA5	MULTI-MSMS	A375_MHC_IP_R1	1	501.690673828125	2	501.290548	1000.56654	0.040667	2.0386E-05	-0.013379	-6.7069E-06	0.027288	1.3679E-05	501.2904445562053	114.39	5.9949	114.39	111.52	117.51	0					272	117	3	0	0	0	0.77624	1	42967	42967		8.5933	0	1	35626000			61041	5545	44522	44873	59477	59477					0.06628261191792717
VTLEEGPQV	9	Unmodified	_VTLEEGPQV_					0	0	0			REV__ENSG00000112238|ENST00000369215|PRDM13	REV__ENSG00000112238|ENST00000369215|PRDM13	MULTI-MSMS	A375_MHC_IP_R1	1	486.6556091308594	2	486.25584	970.497126	-0.23172	-0.00011268	0.0021941	1.0669E-06	-0.22953	-0.00011161	486.25571429468226	46.593	3.7505	46.593	44.928	48.679	0					179	73	3	0	0	0	0.077132	1	16734	16734		54.774	4.8406	1	14500000	+		61042	17718	44523	44874	59478	59478					0.01069757452387421
VTLEFIRGF	9	Unmodified	_VTLEFIRGF_					0	0	0			REV__nc|ENSG00000159409|Q5SZQ8-4|CELF3	REV__nc|ENSG00000159409|Q5SZQ8-4|CELF3	MULTI-SECPEP	A375_MHC_IP_R2	2	361.9417724609375	3	361.206203	1080.59678	-0.14981	-5.4113E-05	2.3473	0.00084787	2.1975	0.00079376	361.5415791643856	45.983	0.3537	46.748	46.552	46.906	0.76519					9	6	2	0	0	0	0.75466	1	17255	17255		2.4985	1.5362	1	2316600	+		61043	20118	44524	44875	59479	59479					0.059706198569983826
VTLEKWMTL	9	Unmodified	_VTLEKWMTL_					0	0	0			REV__ENST00000445744.3_1_5:70388919-70389012:-|nuORF	REV__ENST00000445744.3_1_5:70388919-70389012:-|nuORF	MSMS	A375_MHC_IP_R1	1	560.8248901367188	2	560.807185	1119.59982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.113	1	93.113	92.613	93.613	0								0	0	0	0.15486	1	34224	34224		9.3831	0.63772	1		+		61044	24849	44525	44876	59480	59480					0.04480126919497707
VTLESCQYCF	10	Unmodified	_VTLESCQYCF_					0	0	0			REV__chr7:110963565-111329394|166|17.01|0.37|5.5|-|0|TE_info:L1MC4,L1MC4_dup10963,L1,LINE,donor,+,111329394,111330673|IMMP2L,None|19	REV__chr7:110963565-111329394|166|17.01|0.37|5.5|-|0|TE_info:L1MC4,L1MC4_dup10963,L1,LINE,donor,+,111329394,111330673|IMMP2L,None|19	MSMS	A375_MHC_IP_R1	1	596.6337280273438	2	596.754292	1191.49403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.51	1	104.51	104.01	105.01	0								0	0	0	0.15435	1	38373	38373		6.7232	1.4925	1		+		61045	15770	44526	44877	59481	59481					-0.09405576988297071
VTLEVEHLY	9	Unmodified	_VTLEVEHLY_					0	0	0			REV__nc|ENSG00000179709|Q86W28-2|NLRP8	REV__nc|ENSG00000179709|Q86W28-2|NLRP8	MSMS	A375_MHC_IP_R2	2	551.735595703125	2	551.792589	1101.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.27	1	134.41	133.91	134.91	0.13901								0	0	0	0.15069	1	52819	52819		20.454	0	1		+		61046	21577	44527	44878	59482	59482					0.02390305894869016
VTLFQPAQ	8	Unmodified	_VTLFQPAQ_					0	0	0		ENST00000582124.1_1_17:15877924-15878653:+|nuORF;ENSG00000170425|ENST00000304222|ADORA2B	ENST00000582124.1_1_17:15877924-15878653:+|nuORF	ENST00000582124.1_1_17:15877924-15878653:+|nuORF	MSMS	A375_MHC_IP_R2	2	452.1763916015625	2	452.25036	902.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.04	1	75.778	75.278	76.278	0.73752								0	0	0	0.16876	1	28483	28483		10.824	0	1				61047	7504	44528	44879	59483	59483					0.031023998687601306
VTLFVIKI	8	Unmodified	_VTLFVIKI_					0	0	0			REV__DHX34|p.T250I|1|0.14|ENSG00000134815|chr19:47355082-47355082|C/T|missense_variant	REV__DHX34|p.T250I|1|0.14|ENSG00000134815|chr19:47355082-47355082|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	933.1626586914062	1	932.617916	931.61064	0.15741	0.0001468	-0.47404	-0.0004421	-0.31664	-0.0002953	932.6181862122232	109.82	0.9156	109.82	109.32	110.24	0					20	17	2	0	0	0	0.972	1	40213	40213		2.3027	0	1	1779000	+		61048	15990	44529	44880	59484	59484					0.1420989735609055
VTLGRLASA	9	Unmodified	_VTLGRLASA_					0	0	0		ENSG00000197345|ENST00000362034|MRPL21;ENST00000536637.1_1_11:68665368-68671263:-|nuORF	ENSG00000197345|ENST00000362034|MRPL21	ENSG00000197345|ENST00000362034|MRPL21	MULTI-MSMS	A375_MHC_IP_R1	1	444.668701171875	2	444.269084	886.523616	-0.13461	-5.9805E-05	0.14741	6.5489E-05	0.012795	5.6843E-06	444.2691280374184	40.898	0.40192	40.898	40.712	41.114	0					12	7	2	0	0	0	0.55471	1	14131	14131		17.113	0.1706	1	2908400			61049	9147	44530	44881	59485	59485					0.0758149113436275
VTLGRRQPWS	10	Unmodified	_VTLGRRQPWS_					0	0	0			REV__chr11:62870795-62871577|149|18.78|0.27|6.11|+|0|SLC3A2,SLC3A2|1	REV__chr11:62870795-62871577|149|18.78|0.27|6.11|+|0|SLC3A2,SLC3A2|1	MULTI-MSMS	A375_MHC_IP_R1	1	600.7337646484375	2	600.335821	1198.65709	-0.48607	-0.00029181	-2.1083	-0.0012657	-2.5943	-0.0015575	600.3337955115087	129.1	2.2867	129.1	128.13	130.41	0					120	44	5	0	0	0	0.71361	1	49501	49501		6.2058	0.47393	1	96536000	+		61050	15679	44531	44882	59486	59486					0.06570730240082412
VTLGSFLPAL	10	Unmodified	_VTLGSFLPAL_					0	0	0		TTC21A|p.S210L|1|0.31|ENSG00000168026|chr3:39114655-39114655|C/T|missense_variant	TTC21A|p.S210L|1|0.31|ENSG00000168026|chr3:39114655-39114655|C/T|missense_variant	TTC21A|p.S210L|1|0.31|ENSG00000168026|chr3:39114655-39114655|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	509.7023620605469	2	509.302593	1016.59063	-0.3635	-0.00018513	-0.827	-0.0004212	-1.1905	-0.00060633	509.30267037726173	97.866	1.0153	97.866	97.44	98.455	0					39	19	3	0	0	0	0.20882	1	35949	35949		48.346	4.4876	1	3697300			61051	30090	44532	44883	59487	59487					0.08300101625445677
VTLGSFLPAL	10	Unmodified	_VTLGSFLPAL_					0	0	0		TTC21A|p.S210L|1|0.31|ENSG00000168026|chr3:39114655-39114655|C/T|missense_variant	TTC21A|p.S210L|1|0.31|ENSG00000168026|chr3:39114655-39114655|C/T|missense_variant	TTC21A|p.S210L|1|0.31|ENSG00000168026|chr3:39114655-39114655|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	509.701904296875	2	509.302593	1016.59063	-0.89787	-0.00045729	-0.49617	-0.0002527	-1.394	-0.00070999	509.3024781239022	96.839	1.0636	97.595	97.115	98.178	0.75586					27	20	3	0	0	0	0.20882	1	36766	36766		48.346	0	1	3895900			61052	30090	44532	44883	59488	59488					0.08300101625445677
VTLHDQGTAQW	11	Unmodified	_VTLHDQGTAQW_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	A375_MHC_IP_R1	1	628.7069702148438	2	628.306926	1254.5993	-0.67198	-0.00042221	-1.224	-0.00076908	-1.896	-0.0011913	628.3064143232457	46.489	0.70662	46.489	46.245	46.952	0					19	13	2	0	0	0	0.0066141	1	16325	16325		94.909	65.068	1	3943000			61053	4297	44533	44884	59489	59489					-0.017815764760143793
VTLHDQGTAQW	11	Unmodified	_VTLHDQGTAQW_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	A375_MHC_IP_R2	2	628.7055053710938	2	628.306926	1254.5993	-0.80761	-0.00050743	-1.6416	-0.0010314	-2.4492	-0.0015388	628.3060702609474	45.779	0.55304	46.544	46.252	46.805	0.76519					19	10	2	0	0	0	0.036274	1	17128	17128		81.915	55.647	1	2898100			61054	4297	44533	44884	59490	59490					-0.017815764760143793
VTLHSRHPQL	10	Unmodified	_VTLHSRHPQL_					0	0	0		ENST00000443426.2_1_6:43395621-43402667:+|nuORF	ENST00000443426.2_1_6:43395621-43402667:+|nuORF	ENST00000443426.2_1_6:43395621-43402667:+|nuORF	MSMS	A375_MHC_IP_R1	1	396.62786865234375	3	396.55964	1186.65709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.309	1	29.309	28.809	29.809	0								0	0	0	0.15397	1	9149	9149		7.9454	0	1				61055	12005	44534	44885	59491	59491					0.07122730240075725
VTLIENKEL	9	Unmodified	_VTLIENKEL_					0	0	0		nc|ENSG00000138780|Q8NEC7-3|GSTCD;ENSG00000138780|ENST00000515279|GSTCD	nc|ENSG00000138780|Q8NEC7-3|GSTCD	nc|ENSG00000138780|Q8NEC7-3|GSTCD	MSMS	A375_MHC_IP_R2	2	529.6988525390625	2	529.808239	1057.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.37	1	136.48	135.98	136.98	0.11134								0	0	0	0.15486	1	53569	53569		11.64	0	1				61056	5033	44535	44886	59492	59492					0.0754287892893899
VTLKRFKTKKI	11	Unmodified	_VTLKRFKTKKI_					0	0	0		tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1	tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1	tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1	MSMS	A375_MHC_IP_R2	2	681.43505859375	2	681.453197	1360.89184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.65	1	127.92	127.42	128.42	0.26593								0	0	0	0.16334	1	50087	50087		1.3295	0.13619	1				61057	29468	44536	44887	59493	59493					0.22583027995779048
VTLKRRKTHK	10	Unmodified	_VTLKRRKTHK_					0	0	0			REV__ENSG00000162227|ENST00000294168|TAF6L	REV__ENSG00000162227|ENST00000294168|TAF6L	MSMS	A375_MHC_IP_R2	2	633.9094848632812	2	633.909488	1265.80442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.38	1	121.83	121.33	122.33	0.44488								0	0	0	0.15591	1	46421	46421		1.6526	0	1		+		61058	20240	44537	44888	59494	59494					0.18215246844874855
VTLKTIKK	8	Unmodified	_VTLKTIKK_					0	0	0		ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;nc|ENSG00000186462|Q9ULW6-2|NAP1L2;ENSG00000186462|ENST00000373517|NAP1L2	ENSG00000187109|ENST00000618691|NAP1L1	ENSG00000187109|ENST00000618691|NAP1L1	MULTI-SECPEP	A375_MHC_IP_R2	2	929.9727783203125	1	930.634629	929.627353	-0.078585	-7.3134E-05	0.87463	0.00081396	0.79604	0.00074083	930.6353024717298	148.68	1.5434	148.7	148.04	149.58	0.018707					50	35	2	0	0	0	0.972	1	57794	57794		0	0	1	90672			61059	8806	44538	44889	59495	59495					0.15972398242047348
VTLKTIKKK	9	Unmodified	_VTLKTIKKK_					0	0	0		ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;nc|ENSG00000186462|Q9ULW6-2|NAP1L2;ENSG00000186462|ENST00000373517|NAP1L2	ENSG00000187109|ENST00000618691|NAP1L1	ENSG00000187109|ENST00000618691|NAP1L1	MSMS	A375_MHC_IP_R2	2	353.59942626953125	3	353.581382	1057.72232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.076	1	40.85	40.35	41.35	0.77451								0	0	0	0.15486	1	14828	14828		1.0715	0	1				61060	8806	44539	44890	59496	59496					0.1957633171323323
VTLLAVDPG	9	Unmodified	_VTLLAVDPG_					0	0	0			REV__ENSG00000162621|ENST00000294635|LRRC53	REV__ENSG00000162621|ENST00000294635|LRRC53	MULTI-SECPEP	A375_MHC_IP_R2	2	443.15679931640625	2	442.758018	883.501483	-0.17492	-7.7446E-05	-0.33583	-0.00014869	-0.51075	-0.00022614	442.7566836182373	111.26	1.7373	111.99	111.29	113.03	0.73692					64	33	3	0	0	0	0.76187	1	41863	41863		7.2892	0	1	5245900	+		61061	20277	44540	44891	59497	59497					0.05507266665949828
VTLLETEMLL	10	Unmodified	_VTLLETEMLL_					0	0	0		ENSG00000164118|ENST00000503780|CEP44;ENST00000508483.1_1_4:175229968-175237474:+|nuORF;nc|ENSG00000164118|Q9C0F1-2|CEP44	ENSG00000164118|ENST00000503780|CEP44	ENSG00000164118|ENST00000503780|CEP44	MULTI-SECPEP	A375_MHC_IP_R2	2	387.4454345703125	3	387.886031	1160.63626	-0.21607	-8.3809E-05	-2.8302	-0.0010978	-3.0463	-0.0011816	388.21995425746144	40.372	0.70958	41.146	40.676	41.386	0.77451					17	13	2	0	0	0	0.92957	1	14967	14967		1.5923	0	1	1425000			61062	6784	44541	44892	59498	59498					0.0623695902554573
VTLLGQILDK	10	Unmodified	_VTLLGQILDK_					0	0	0			REV__nc|ENSG00000100784|O75582-3|RPS6KA5	REV__nc|ENSG00000100784|O75582-3|RPS6KA5	MULTI-SECPEP	A375_MHC_IP_R1	1	550.1199951171875	2	550.339707	1098.66486	-0.63625	-0.00035015	-0.48758	-0.00026834	-1.1238	-0.00061849	550.3394055511425	53.264	0.40541	53.264	53.048	53.453	0					12	7	2	0	0	0	0.92076	1	18943	18943		10.151	1.4052	1	1470900	+		61063	17119	44542	44893	59499	59499					0.1194744471699778
VTLLGVTVTV	10	Unmodified	_VTLLGVTVTV_					0	0	0		nc|ENSG00000198925|Q7Z3C6-3|ATG9A;nc|ENSG00000198925|Q7Z3C6-2|ATG9A;ENSG00000198925|ENST00000361242|ATG9A	nc|ENSG00000198925|Q7Z3C6-3|ATG9A	nc|ENSG00000198925|Q7Z3C6-3|ATG9A	MULTI-SECPEP	A375_MHC_IP_R1	1	501.7154235839844	2	501.3157	1000.61685	-0.39306	-0.00019705	0.0016401	8.2222E-07	-0.39142	-0.00019623	501.3156063929708	75.7	0.90688	75.7	75.312	76.219	0					35	17	4	0	0	0	0.38158	1	27557	27557		36.127	7.0454	1	8624500			61064	9373	44543	44894	59500	59500					0.11656370796958981
VTLLHYDKL	9	Unmodified	_VTLLHYDKL_					0	0	0			REV__ENST00000361354.8_1_2:183800085-183806842:-|nuORF	REV__ENST00000361354.8_1_2:183800085-183806842:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	551.7657470703125	2	551.318774	1100.623	-0.52525	-0.00028958	-1.314	-0.00072441	-1.8392	-0.001014	551.3194484908362	98.737	0.30725	98.737	98.557	98.864	0					7	5	2	0	0	0	0.74169	1	36212	36212		3.9444	0	1	613690	+		61065	23909	44544	44895	59501	59501					0.07670889028463534
VTLLLALT	8	Unmodified	_VTLLLALT_					0	0	0			REV__ENSG00000134830|ENST00000595464|C5AR2	REV__ENSG00000134830|ENST00000595464|C5AR2	MSMS	A375_MHC_IP_R1	1	422.27960205078125	2	422.281129	842.547705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.698	1	29.698	29.198	30.198	0								0	0	0	0.16876	1	9344	9344		5.2307	0	1		+		61066	18807	44545	44896	59502	59502					0.1201333156803912
VTLLLLLLL	9	Unmodified	_VTLLLLLLL_					0	0	0		ENSG00000161610|ENST00000293330|HCRT	ENSG00000161610|ENST00000293330|HCRT	ENSG00000161610|ENST00000293330|HCRT	MULTI-SECPEP	A375_MHC_IP_R2	2	505.70550537109375	2	505.864829	1009.7151	-0.59191	-0.00029943	-3.6055	-0.0018239	-4.1974	-0.0021233	506.3629598992217	98.973	0.15199	99.733	99.606	99.758	0.75977					4	2	2	0	0	0	0.81254	1	37530	37530		2.0598	0	1	977230			61067	6479	44546	44897	59503	59503					0.21063599112801512
VTLLLLTLLAI	11	Unmodified	_VTLLLLTLLAI_					0	0	0			REV__nc|ENSG00000134121|O00533|CHL1	REV__nc|ENSG00000134121|O00533|CHL1	MSMS	A375_MHC_IP_R1	1	591.869873046875	2	591.907225	1181.7999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.14	1	117.14	116.64	117.64	0								0	0	0	0.16334	1	42986	42986		1.3295	0	1		+		61068	18754	44547	44898	59504	59504					0.2162692485876505
VTLMHENL	8	Unmodified	_VTLMHENL_					0	0	0		ENST00000443660.5_1_22:19420159-19420315:+|nuORF	ENST00000443660.5_1_22:19420159-19420315:+|nuORF	ENST00000443660.5_1_22:19420159-19420315:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	479.1475524902344	2	478.747127	955.479702	-0.40185	-0.00019238	0.60007	0.00028728	0.19822	9.4898E-05	478.7474204240514	102.13	1.1126	102.13	101.7	102.81	0					29	21	2	0	0	0	0.92636	1	37530	37530		16.942	7.5949	1	2873000			61069	12008	44548	44899	59505	59505					0.0001813864572568491
VTLMLVLCAY	10	Unmodified	_VTLMLVLCAY_					0	0	0			REV__ENST00000534003.5_1_11:47776147-47786836:-|nuORF	REV__ENST00000534003.5_1_11:47776147-47786836:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	563.705078125	2	563.305964	1124.59737	-0.251	-0.00014139	-1.4107	-0.00079466	-1.6617	-0.00093605	563.3049554868485	78.934	0.60661	78.934	78.454	79.061	0					19	11	2	0	0	0	0.66712	1	28801	28801		15.847	0	1	2539200	+		61070	25886	44549	44900	59506	59506					0.04005955190177701
VTLNDSGLY	9	Unmodified	_VTLNDSGLY_					0	0	0		ENSG00000166257|ENST00000299333|SCN3B	ENSG00000166257|ENST00000299333|SCN3B	ENSG00000166257|ENST00000299333|SCN3B	MULTI-MSMS	A375_MHC_IP_R1	1	491.72088623046875	2	491.248015	980.481476	-0.31996	-0.00015718	0.24422	0.00011997	-0.075733	-3.7204E-05	491.2479373749072	74.222	0.86276	74.222	73.69	74.553	0					34	16	3	0	0	0	0.17328	1	27099	27099		39.957	13.074	1	3569900			61071	7048	44550	44901	59507	59507					-0.009545290646542526
VTLNDSGLY	9	Unmodified	_VTLNDSGLY_					0	0	0		ENSG00000166257|ENST00000299333|SCN3B	ENSG00000166257|ENST00000299333|SCN3B	ENSG00000166257|ENST00000299333|SCN3B	MULTI-MSMS	A375_MHC_IP_R2	2	491.720458984375	2	491.248015	980.481476	-0.47834	-0.00023499	0.27801	0.00013657	-0.20034	-9.8416E-05	491.248053670411	73.417	0.8162	74.152	73.734	74.551	0.73541					33	15	3	0	0	0	0.17328	1	27879	27879		39.957	1.7818	1	4413200			61072	7048	44550	44901	59508	59508					-0.009545290646542526
VTLNGAII	8	Unmodified	_VTLNGAII_					0	0	0			REV__GPR52|p.F178Lfs*60|1|0.5|ENSG00000203737|chr1:174448640-174448640|T/-|frameshift_variant	REV__GPR52|p.F178Lfs*60|1|0.5|ENSG00000203737|chr1:174448640-174448640|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	401.1472473144531	2	400.747453	799.480354	-0.23868	-9.5651E-05	-0.028293	-1.1338E-05	-0.26697	-0.00010699	400.7473256016325	65.828	0.45839	66.566	66.375	66.833	0.73812					14	8	2	0	0	0	0.19889	1	24965	24965		67.344	0	1	1929900	+		61073	22470	44551	44902	59509	59509					0.07259301357089498
VTLNNRIL	8	Unmodified	_VTLNNRIL_					0	0	0			REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	MULTI-MSMS	A375_MHC_IP_R2	2	472.6905517578125	2	471.790184	941.565815	-0.51649	-0.00024367	-0.080301	-3.7885E-05	-0.59679	-0.00028156	471.7902503836808	83.75	2.1429	84.489	84.099	86.242	0.73962					82	41	4	0	0	0	0.61116	1	31795	31795		44.407	0.54872	1	40262000	+		61074	18151	44552	44903	59510	59510					0.0926946654275298
VTLNNSTANY	10	Unmodified	_VTLNNSTANY_					0	0	0			REV__COL12A1|p.S1768N|1|0.1|ENSG00000111799|chr6:75137528-75137528|C/T|missense_variant	REV__COL12A1|p.S1768N|1|0.1|ENSG00000111799|chr6:75137528-75137528|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	548.6873779296875	2	548.767103	1095.51965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.04	1	44.04	43.54	44.54	0								0	0	0	0.14983	1	15345	15345		18.146	4.6385	1		+		61075	15822	44553	44904	59511	59511					-0.024286431500058825
VTLNVHSGRF	10	Unmodified	_VTLNVHSGRF_					0	0	0		ENST00000533312.1_1_1:207087089-207095229:-|nuORF	ENST00000533312.1_1_1:207087089-207095229:-|nuORF	ENST00000533312.1_1_1:207087089-207095229:-|nuORF	MSMS	A375_MHC_IP_R1	1	377.24853515625	3	377.208607	1128.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.669	1	24.669	24.169	25.169	0								0	0	0	0.15324	1	7055	7055		10.315	1.339	1				61076	13196	44554	44905	59512	59512					0.04483352457418732
VTLPEAIHF	9	Unmodified	_VTLPEAIHF_					0	0	0		FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	514.1846313476562	2	513.784567	1025.55458	-0.47684	-0.00024499	0.104	5.3434E-05	-0.37284	-0.00019156	513.784678246901	96.299	0.51028	96.299	96.069	96.58	0					13	9	2	0	0	0	0.43707	1	35406	35406		36.044	17.909	1	1956600			61077	8107	44555	44906	59513	59513					0.04282644448608153
VTLPEAIHF	9	Unmodified	_VTLPEAIHF_					0	0	0		FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	513.784567	1025.55458	-0.59627	-0.00030635	0.28841	0.00014818	-0.30786	-0.00015817	513.784773760938	95.525	0.45912	96.276	96.041	96.5	0.75045	-0.011959	0.00013244	NaN	77.984	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1453500			61078	8107	44555	44906							0.04282644448608153
VTLPGRWVPG	10	Unmodified	_VTLPGRWVPG_					0	0	0			REV__ENST00000301332.2_1_8:145692465-145692931:+|nuORF	REV__ENST00000301332.2_1_8:145692465-145692931:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	541.71044921875	2	541.311284	1080.60801	-0.97423	-0.00052736	-0.25666	-0.00013893	-1.2309	-0.00066629	541.3105700630774	55.839	0.91492	56.589	56.186	57.101	0.75015					25	17	3	0	0	0	0.85226	1	21119	21119		10.074	0	1	2938600	+		61079	23424	44556	44907	59514	59514					0.07093441951110435
VTLPVQQAW	9	Unmodified	_VTLPVQQAW_					0	0	0		ENST00000378566.5_1_9:35108314-35108714:-|nuORF;ENST00000605104.1_1_9:35108540-35108714:-|nuORF	ENST00000378566.5_1_9:35108314-35108714:-|nuORF	ENST00000378566.5_1_9:35108314-35108714:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	521.689453125	2	521.290017	1040.56548	-0.44326	-0.00023106	0.67848	0.00035369	0.23523	0.00012262	521.2899337570026	101.5	1.1649	101.5	101.04	102.2	0					55	22	4	0	0	0	0.021889	1	37295	37295		81.89	38.032	1	4836400			61080	11318	44557	44908	59515	59515					0.0468204682290434
VTLQAFLQA	9	Unmodified	_VTLQAFLQA_					0	0	0		ENST00000537498.1_1_16:89114163-89119334:-|nuORF	ENST00000537498.1_1_16:89114163-89119334:-|nuORF	ENST00000537498.1_1_16:89114163-89119334:-|nuORF	MSMS	A375_MHC_IP_R2	2	495.47698974609375	2	495.784567	989.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.197	1	69.932	69.432	70.432	0.73511								0	0	0	0.15069	1	26223	26223		20.454	1.1966	1				61081	13248	44558	44909	59516	59516					0.0593864444861083
VTLRSYLFF	9	Unmodified	_VTLRSYLFF_					0	0	0			REV__nc|ENSG00000211892|P01861-1|IGHG4	REV__nc|ENSG00000211892|P01861-1|IGHG4	MSMS	A375_MHC_IP_R1	1	382.616943359375	3	382.54997	1144.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.234	1	54.234	53.734	54.734	0								0	0	0	0.15486	1	19353	19353		7.609	0	1		+		61082	27481	44559	44910	59517	59517					0.061551928911057985
VTLSETVLIF	10	Unmodified	_VTLSETVLIF_					0	0	0			REV__ENST00000608477.1_1_7:128169020-128169233:-|nuORF	REV__ENST00000608477.1_1_7:128169020-128169233:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	374.95379638671875	3	374.553269	1120.63798	0.36809	0.00013787	0.2073	7.7646E-05	0.57539	0.00021551	374.5530621969089	37.376	1.323	37.376	36.845	38.168	0					41	25	2	0	0	0	0.88361	1	12589	12589		15.739	0	1	4235200	+		61083	26561	44560	44911	59518	59518					0.08248336105816634
VTLSFTQPKL	10	Unmodified	_VTLSFTQPKL_					0	0	0			REV__NOMO1|p.P485S|1|0.24|ENSG00000103512|chr16:14864642-14864642|C/T|missense_variant	REV__NOMO1|p.P485S|1|0.24|ENSG00000103512|chr16:14864642-14864642|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	378.6256408691406	3	378.557013	1132.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.883	1	20.883	20.383	21.383	0								0	0	0	0.1524	1	5419	5419		11.518	7.9308	1		+		61084	27619	44561	44912	59519	59519					0.0881915819995811
VTLSKSLQ	8	Unmodified	_VTLSKSLQ_					0	0	0		nc|ENSG00000169604|Q9H6X2-3|ANTXR1;ENST00000463335.1_1_2:69240622-69330161:+|nuORF	nc|ENSG00000169604|Q9H6X2-3|ANTXR1	nc|ENSG00000169604|Q9H6X2-3|ANTXR1	MULTI-SECPEP	A375_MHC_IP_R1	1	874.8131103515625	1	875.519659	874.512382	-0.24001	-0.00021013	-0.2251	-0.00019708	-0.46511	-0.00040721	875.519061601952	50.89	0.40483	50.89	50.663	51.068	0					10	7	2	0	0	0	0.972	1	18088	18088		5.2307	0	1	1967900			61085	12212	44562	44913	59520	59520					0.07010669040232642
VTLSPDHGY	9	Unmodified	_VTLSPDHGY_					0	0	0		nc|ENSG00000113303|Q6UX41-7|BTNL8;nc|ENSG00000113303|Q6UX41-6|BTNL8;ENSG00000113303|ENST00000340184|BTNL8;nc|ENSG00000113303|Q6UX41-4|BTNL8	nc|ENSG00000113303|Q6UX41-7|BTNL8	nc|ENSG00000113303|Q6UX41-7|BTNL8	MSMS	A375_MHC_IP_R2	2	494.6947937011719	2	494.740357	987.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.88	1	59.627	59.127	60.127	0.74714								0	0	0	0.11948	1	22277	22277		36.044	0	1				61086	3140	44563	44914	59521	59521					-0.028073958618506367
VTLSPRRKHTL	11	Unmodified	_VTLSPRRKHTL_					0	0	0			REV__ENSG00000188996|ENST00000380907|HUS1B	REV__ENSG00000188996|ENST00000380907|HUS1B	MULTI-SECPEP	A375_MHC_IP_R1	1	437.127197265625	3	436.601727	1306.78335	0.012681	5.5364E-06	-0.31145	-0.00013598	-0.29877	-0.00013044	436.6015702606306	35.476	0.40639	35.476	35.167	35.573	0					10	7	2	0	0	0	0.99847	1	11675	11675		2.8433	0	1	1432800	+		61087	22132	44564	44915	59522	59522					0.14223236745351642
VTLSQKTI	8	Unmodified	_VTLSQKTI_					0	0	0		ENSG00000216937|ENST00000639629|CCDC7	ENSG00000216937|ENST00000639629|CCDC7	ENSG00000216937|ENST00000639629|CCDC7	MULTI-SECPEP	A375_MHC_IP_R2	2	444.6689758300781	2	445.271293	888.528032	-0.65561	-0.00029192	0.51832	0.00023079	-0.13729	-6.113E-05	445.2714544792376	58.106	0.55746	58.854	58.578	59.135	0.74894					17	10	2	0	0	0	0.91495	1	22036	22036		12.532	0	1	1887700			61088	9652	44565	44916	59523	59523					0.07930955557299058
VTLSSHCTF	9	Unmodified	_VTLSSHCTF_					0	0	0			REV__nc|ENSG00000185252|Q16587-4|ZNF74	REV__nc|ENSG00000185252|Q16587-4|ZNF74	MULTI-MSMS	A375_MHC_IP_R1	1	497.6971740722656	2	497.73676	993.458967	-0.36038	-0.00017937	0.14471	7.2028E-05	-0.21567	-0.00010734	497.73743173916864	96.24	1.0155	96.24	95.817	96.833	0					45	19	4	0	0	0	0.32899	3	35337	35337;35384;35524		28.487	0	1	3973500	+		61089	21881	44566	44917	59524;59525;59526	59524					-0.03802451733918133
VTLSTSTEVM	10	Unmodified	_VTLSTSTEVM_					0	0	0			REV__ENST00000442885.2_1_11:65655295-65655958:-|nuORF	REV__ENST00000442885.2_1_11:65655295-65655958:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1067.798095703125	1	1067.5289	1066.52163	0.10412	0.00011115	2.4154	0.0025785	2.5195	0.0026896	1068.5326281004438	124.94	0.30266	125.27	125.1	125.4	0.32969					7	5	2	0	0	0	0.91909	1	48566	48566		9.3831	0.035688	1	57284000	+		61090	24822	44567	44918	59527	59527					-0.008973504564210089
VTLTELAAR	9	Unmodified	_VTLTELAAR_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-SECPEP	A375_MHC_IP_R2	2	973.2564086914062	1	973.567672	972.560395	0.10151	9.8823E-05	-0.87988	-0.00085662	-0.77837	-0.0007578	973.5694790876025	117.01	0.40792	117.67	117.43	117.84	0.65961					13	7	2	0	0	0	0.76187	1	44225	44225		11.64	0	1	9799700	+		61091	21862	44568	44919	59528	59528					0.07301742960282809
VTLTKGDP	8	Unmodified	_VTLTKGDP_					0	0	0		ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2	ENST00000480912.5_1_6:31847863-31860642:-|nuORF	ENST00000480912.5_1_6:31847863-31860642:-|nuORF	MSMS	A375_MHC_IP_R1	1	415.63128662109375	2	415.734543	829.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.888	1	31.888	31.388	32.388	0								0	0	0	0.16876	1	10252	10252		11.64	0	1				61092	9435	44569	44920	59529	59529					0.03298407114800739
VTLTNWFSY	9	Unmodified	_VTLTNWFSY_					0	0	0		nc|ENSG00000184716|A6NH21-2|SERINC4;ENST00000448553.5_1_15:44087200-44089477:-|nuORF;nc|ENSG00000184716|A6NH21|SERINC4	nc|ENSG00000184716|A6NH21-2|SERINC4	nc|ENSG00000184716|A6NH21-2|SERINC4	MULTI-SECPEP	A375_MHC_IP_R2	2	566.4362182617188	2	565.779482	1129.54441	-0.77488	-0.00043841	-0.062102	-3.5136E-05	-0.83698	-0.00047355	565.7791446652443	21.92	0.50999	22.54	22.387	22.897	0.61932					11	9	2	0	0	0	0.73363	1	7009	7009		10.824	0	1	961490			61093	12053	44570	44921	59530	59530					-0.015179632766148643
VTLVIAHI	8	Unmodified	_VTLVIAHI_					0	0	0		DUSP22|p.Y102H|1|0.16|ENSG00000112679|chr6:348143-348143|T/C|missense_variant	DUSP22|p.Y102H|1|0.16|ENSG00000112679|chr6:348143-348143|T/C|missense_variant	DUSP22|p.Y102H|1|0.16|ENSG00000112679|chr6:348143-348143|T/C|missense_variant	MSMS	A375_MHC_IP_R2	2	433.2850036621094	2	433.278921	864.543289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.13	1	139.19	138.69	139.69	0.059906								0	0	0	0.16876	1	54523	54523		0.69038	0	1				61094	810	44571	44922	59531	59531					0.10559867145116186
VTLVTLLLLL	10	Unmodified	_VTLVTLLLLL_					0	0	0			REV__nc|ENSG00000185499|P15941-14|MUC1	REV__nc|ENSG00000185499|P15941-14|MUC1	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6148681640625	2	549.380843	1096.74713	-0.81717	-0.00044894	4.4614	0.002451	3.6442	0.0020021	549.88362865463	64.944	0.3055	65.682	65.511	65.817	0.73811					6	5	2	0	0	0	0.93615	1	24634	24634		0.40072	0	1	487380	+		61095	21895	44572	44923	59532	59532					0.2026296679596271
VTLVVANEV	9	Unmodified	_VTLVVANEV_					0	0	0			REV__ENSG00000186190|ENST00000375494|BPIFB3	REV__ENSG00000186190|ENST00000375494|BPIFB3	MULTI-SECPEP	A375_MHC_IP_R1	1	472.67718505859375	2	472.276575	942.538597	-0.17171	-8.1094E-05	0.74001	0.00034949	0.5683	0.0002684	472.2769301034787	108.11	0.55867	108.11	107.8	108.36	0					18	10	2	0	0	0	0.53748	1	39718	39718		24.021	1.2843	1	1333600	+		61096	21954	44573	44924	59533	59533					0.06502938211713172
VTMDQNRGPS	10	Unmodified	_VTMDQNRGPS_					0	0	0			REV__ENST00000508179.1_1_5:9549166-9549217:+|nuORF	REV__ENST00000508179.1_1_5:9549166-9549217:+|nuORF	MSMS	A375_MHC_IP_R1	1	552.6781005859375	2	552.758755	1103.50296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.415	1	92.415	91.915	92.915	0								0	0	0	0.14741	1	33963	33963		22.736	3.4793	1		+		61097	25577	44574	44925	59534	59534					-0.04465467307591098
VTMGVNRSL	9	Unmodified	_VTMGVNRSL_					0	0	0			REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18	REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18	MULTI-MSMS	A375_MHC_IP_R2	2	489.16741943359375	2	488.765852	975.51715	-0.61763	-0.00030188	1.3321	0.00065108	0.71445	0.0003492	488.76707213542767	66.862	1.4756	67.599	67.29	68.766	0.73631					62	28	4	0	0	0	0.60101	1	25384	25384		14.838	1.3304	1	3718800	+		61098	17346	44575	44926	59535	59535					0.02841229911348364
VTMGYKIILK	10	Unmodified	_VTMGYKIILK_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-SECPEP	A375_MHC_IP_R1	1	388.9330139160156	3	389.238627	1164.69405	0.32548	0.00012669	0.49087	0.00019106	0.81635	0.00031775	389.2388442131476	47.755	0.40335	47.755	47.517	47.92	0					15	7	3	0	0	0	0.92445	1	16835	16835		4.4062	0	1	1052100	+		61099	20465	44576	44927	59536	59536					0.11829265741630479
VTMLVFIYY	9	Unmodified	_VTMLVFIYY_					0	0	0			REV__KCNG3|p.S268F|1|0.04|ENSG00000171126|chr2:42444442-42444442|G/A|missense_variant	REV__KCNG3|p.S268F|1|0.04|ENSG00000171126|chr2:42444442-42444442|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	383.3043212890625	3	383.540195	1147.59875	0.70211	0.00026929	0.38996	0.00014957	1.0921	0.00041885	383.54006033655776	48.481	0.55647	48.481	48.325	48.882	0					15	10	2	0	0	0	0.74875	1	17090	17090		10.8	2.644	1	1629700	+		61100	26825	44577	44928	59537	59537					0.030859125505912743
VTMPMSAL	8	Unmodified	_VTMPMSAL_					0	0	0			REV__AUTS2|p.G1017R|1|0.46|ENSG00000158321|chr7:70790265-70790265|G/A|missense_variant	REV__AUTS2|p.G1017R|1|0.46|ENSG00000158321|chr7:70790265-70790265|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	425.16558837890625	2	425.214075	848.413596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.757	1	92.757	92.257	93.257	0								0	0	0	0.16876	1	34092	34092		10.183	0	1		+		61101	15488	44578	44929	59538	59538					-0.016673935206767965
VTMPPPSPV	9	Unmodified	_VTMPPPSPV_					0	0	0			REV__ENSG00000173988|ENST00000595396|LRRC63	REV__ENSG00000173988|ENST00000595396|LRRC63	MULTI-MSMS	A375_MHC_IP_R1	1	925.46826171875	1	924.485916	923.478639	0.082311	7.6095E-05	-1.455	-0.0013451	-1.3727	-0.0012691	924.4859888807786	105.79	2.1923	105.79	105.15	107.34	0					76	42	2	0	0	0	0.6898	1	38641	38641		7.9102	0	1	3316700	+		61102	21257	44579	44930	59539	59539					0.013839242768312943
VTNAFGVEPI	10	Unmodified	_VTNAFGVEPI_					0	0	0			REV__BRD1|p.G784Afs*109|1|0.19|ENSG00000100425|chr22:49794042-49794042|C/-|frameshift_variant	REV__BRD1|p.G784Afs*109|1|0.19|ENSG00000100425|chr22:49794042-49794042|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	524.0365600585938	2	523.779482	1045.54441	-0.74606	-0.00039077	-1.2961	-0.00067889	-2.0422	-0.0010697	523.7801739427495	133.18	0.66336	133.18	132.89	133.56	0					19	12	2	0	0	0	0.81532	1	51451	51451		19.362	4.7802	1	5335700	+		61103	15523	44580	44931	59540	59540					0.023460367233838042
VTNEDYSF	8	Unmodified	_VTNEDYSF_					0	0	0			REV__ENSG00000105875|ENST00000354475|WDR91	REV__ENSG00000105875|ENST00000354475|WDR91	MULTI-MSMS	A375_MHC_IP_R1	1	488.1610412597656	2	487.708722	973.402892	-0.35541	-0.00017334	0.085137	4.1522E-05	-0.27027	-0.00013181	487.70860137211616	76.853	0.81407	76.853	76.421	77.235	0					31	15	3	0	0	0	0.76248	1	28103	28103		16.942	3.4344	1	8072700	+		61104	17415	44581	44932	59541	59541					-0.08487381369752711
VTNEKLSKF	9	Unmodified	_VTNEKLSKF_					0	0	0			REV__ENST00000367287.4_1_1:201938908-201938944:+|nuORF	REV__ENST00000367287.4_1_1:201938908-201938944:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1843872070312	2	533.300581	1064.58661	-0.6152	-0.00032809	-0.4461	-0.0002379	-1.0613	-0.00056599	533.3003673299891	100.65	0.40472	100.65	100.48	100.89	0					12	7	2	0	0	0	0.71071	1	37006	37006		10.074	0.6908	1	1548300	+		61105	23966	44582	44933	59542	59542					0.05690012131753974
VTNETAEDQ	9	Unmodified	_VTNETAEDQ_					0	0	0		chr6:10434426-10434513|454|129.52|0.04|11.61|-|2|LINC00518,LINC00518|1;chr6:10434363-10434513|200|25.5|0.0|21.28|-|2|LINC00518,LINC00518|1	chr6:10434426-10434513|454|129.52|0.04|11.61|-|2|LINC00518,LINC00518|1	chr6:10434426-10434513|454|129.52|0.04|11.61|-|2|LINC00518,LINC00518|1	MSMS	A375_MHC_IP_R1	1	503.68994140625	2	503.719818	1005.42508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.54	1	88.54	88.04	89.04	0								0	0	0	0.15486	1	32506	32506		10.824	0	1				61106	488	44583	44934	59543	59543					-0.07741201691999322
VTNKLIITL	9	Unmodified	_VTNKLIITL_					0	0	0			REV__ENSG00000196074|ENST00000357552|SYCP2	REV__ENSG00000196074|ENST00000357552|SYCP2	MULTI-SECPEP	A375_MHC_IP_R2	2	508.1946105957031	2	507.831517	1013.64848	-0.8512	-0.00043226	-0.52628	-0.00026726	-1.3775	-0.00069953	507.8311555287657	51.035	0.40455	51.789	51.615	52.019	0.75406					14	7	3	0	0	0	0.69504	1	19144	19144		1.8442	0	1	3078400	+		61107	22155	44584	44935	59544	59544					0.14220363550907678
VTNKRTKL	8	Unmodified	_VTNKRTKL_					0	0	0			REV__ENST00000545912.1_1_11:95432313-95433683:+|nuORF	REV__ENST00000545912.1_1_11:95432313-95433683:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	480.4718933105469	2	480.303458	958.592364	-0.23662	-0.00011365	2.5221	0.0012114	2.2855	0.0010977	480.3034747225275	35.497	0.40639	35.497	35.167	35.573	0					9	7	2	0	0	0	0.972	1	11688	11688		4.3292	2.6766	1	1059800	+		61108	25996	44585	44936	59545	59545					0.1114115543407479
VTNKSQIRTW	10	Unmodified	_VTNKSQIRTW_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	A375_MHC_IP_R1	1	411.9630432128906	3	411.56305	1231.66732	0.12304	5.0637E-05	-0.33543	-0.00013805	-0.21239	-8.7412E-05	411.5628911167289	25.027	0.81161	25.027	24.852	25.664	0					33	15	3	0	0	0	0.012187	1	7225	7225		90.964	67.163	1	122320000			61109	4401	44586	44937	59546	59546					0.060752931746719696
VTNKSQIRTW	10	Unmodified	_VTNKSQIRTW_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	A375_MHC_IP_R1	1	617.2404174804688	2	616.840936	1231.66732	-0.33873	-0.00020894	-0.23801	-0.00014682	-0.57674	-0.00035576	616.8406022582118	25.012	0.50509	25.012	24.852	25.357	0					19	9	3	0	0	0	1.6391E-10	1	7229	7229		243.1	163.5	1	24642000			61110	4401	44586	44937	59547	59547					0.060752931746719696
VTNKSQIRTW	10	Unmodified	_VTNKSQIRTW_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	A375_MHC_IP_R2	2	411.962890625	3	411.56305	1231.66732	-0.29463	-0.00012126	-0.18225	-7.5009E-05	-0.47688	-0.00019627	411.5629267112718	24.391	0.35555	25.035	24.857	25.212	0.64368					20	6	4	0	0	0	0.012187	1	7983	7983		90.964	61.527	1	122990000			61111	4401	44586	44937	59548	59548					0.060752931746719696
VTNKSQIRTW	10	Unmodified	_VTNKSQIRTW_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	A375_MHC_IP_R2	2	617.2403564453125	2	616.840936	1231.66732	-0.96305	-0.00059405	-0.26586	-0.00016399	-1.2289	-0.00075804	616.8407857106913	24.391	0.60791	25.035	24.857	25.465	0.64368					15	11	3	0	0	0	3.1563E-05	1	8009	8009		203.78	133.44	1	21937000			61112	4401	44586	44937	59549	59549					0.060752931746719696
VTNKSQIRTW	10	Unmodified	_VTNKSQIRTW_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MATCH	A375_MHC_IP_R2	2		3	411.56305	1231.66732	-0.35782	-0.00014727	-0.12532	-5.1577E-05	-0.48314	-0.00019884	411.5629954031112	24.696	0.3545	25.339	25.161	25.516	0.64368	0.1562	0.00019057	NaN	90.964	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30955000			61113	4401	44586	44937							0.060752931746719696
VTNLEILLED	10	Unmodified	_VTNLEILLED_					0	0	0		nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MULTI-MSMS	A375_MHC_IP_R1	1	387.28057861328125	3	386.879933	1157.61797	0.14142	5.4714E-05	0.53467	0.00020685	0.67609	0.00026157	386.8804413533564	52.476	0.65972	52.476	52.237	52.897	0					22	12	2	0	0	0	0.71619	1	18755	18755		5.0475	0	1	1668600			61114	9947	44587	44938	59550	59550					0.04546540375190489
VTNLFPLVL	9	Unmodified	_VTNLFPLVL_					0	0	0			REV__ENST00000262056.13_1_12:53434781-53434886:+|nuORF	REV__ENST00000262056.13_1_12:53434781-53434886:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	508.7017517089844	2	508.312961	1014.61137	-0.51148	-0.00025999	1.2033	0.00061165	0.69181	0.00035166	508.8161782960843	65.22	1.1208	65.22	64.495	65.616	0					51	21	4	0	0	0	0.4261	1	23558	23558		30.637	2.1497	1	6422900	+		61115	23195	44588	44939	59551	59551					0.10464692005132292
VTNLLQLPQ	9	Unmodified	_VTNLLQLPQ_					0	0	0		ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2	ENSG00000101972|ENST00000371145|STAG2	ENSG00000101972|ENST00000371145|STAG2	MULTI-SECPEP	A375_MHC_IP_R1	1	513.6506958007812	2	513.303124	1024.5917	-0.43216	-0.00022183	-1.1164	-0.00057306	-1.5486	-0.00079489	513.303191820733	101.57	0.55611	101.57	101.24	101.8	0					24	10	3	0	0	0	0.38578	1	37388	37388		34.402	6.7729	1	1408800			61116	2340	44589	44940	59552	59552					0.0803831599437217
VTNLVHVAKIL	11	Unmodified	_VTNLVHVAKIL_					0	0	0			REV__ENSG00000169214|ENST00000641470|OR6F1	REV__ENSG00000169214|ENST00000641470|OR6F1	MSMS	A375_MHC_IP_R2	2	604.1659545898438	2	603.882073	1205.74959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.35	1	113.07	112.57	113.57	0.72458								0	0	0	0.16273	1	42355	42355		4.5289	0.58447	1		+		61117	20917	44590	44941	59553	59553					0.1549481525360079
VTNMSEEYR	9	Unmodified	_VTNMSEEYR_					0	0	0			REV__nc|ENSG00000174844|Q6ZR08|DNAH12	REV__nc|ENSG00000174844|Q6ZR08|DNAH12	MULTI-SECPEP	A375_MHC_IP_R2	2	377.2366027832031	3	376.837851	1127.49172	-0.10526	-3.9666E-05	-2.474	-0.0009323	-2.5793	-0.00097197	376.83659306653516	23.288	0.25271	23.919	23.777	24.029	0.63014					10	4	3	0	0	0	0.75519	1	7493	7493		3.8763	0	1	4120900	+		61118	27370	44591	44942	59554	59554					-0.06692289401735252
VTNPHSSQW	9	Unmodified	_VTNPHSSQW_					0	0	0		nc|ENSG00000116717|P24522-2|GADD45A;ENSG00000116717|ENST00000370986|GADD45A	nc|ENSG00000116717|P24522-2|GADD45A	nc|ENSG00000116717|P24522-2|GADD45A	MULTI-MSMS	A375_MHC_IP_R1	1	528.6484985351562	2	528.24888	1054.48321	-0.53524	-0.00028274	-0.069387	-3.6653E-05	-0.60462	-0.00031939	528.2486652335195	24.977	0.40358	24.977	24.801	25.204	0					10	7	2	0	0	0	0.056914	1	7232	7232		61.602	30.965	1	12298000			61119	3422	44592	44943	59555	59555					-0.04185475256031168
VTNPHTDAW	9	Unmodified	_VTNPHTDAW_					0	0	0		ENSG00000099860|ENST00000215631|GADD45B	ENSG00000099860|ENST00000215631|GADD45B	ENSG00000099860|ENST00000215631|GADD45B	MULTI-SECPEP	A375_MHC_IP_R1	1	521.183349609375	2	520.743431	1039.47231	-0.76441	-0.00039806	-1.8922	-0.00098533	-2.6566	-0.0013834	520.7423320680934	30.919	0.50598	30.919	30.603	31.109	0					11	9	2	0	0	0	0.59098	1	9826	9826		16.149	8.8599	1	656860			61120	2089	44593	44944	59556	59556					-0.04584877630327355
VTNPKTQR	8	Unmodified	_VTNPKTQR_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;NBEAL1|p.S2548Lfs*29|1|0.72|ENSG00000144426|chr2:203209266-203209266|T/-|frameshift_variant;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	A375_MHC_IP_R1	1	472.6693420410156	2	472.269616	942.524678	0.042972	2.0294E-05	-0.23868	-0.00011272	-0.19571	-9.2428E-05	472.26946770518805	114.33	2.847	114.33	113.29	116.14	0					114	55	3	0	0	0	0.76248	1	41675	41675		16.942	1.0951	1	15887000			61121	5485	44594	44945	59557	59557					0.05111705503270514
VTNRPFPPIV	10	Unmodified	_VTNRPFPPIV_					0	0	0			REV__ENST00000573005.1_1_16:48398925-48399497:-|nuORF	REV__ENST00000573005.1_1_16:48398925-48399497:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	380.11376953125	3	380.557236	1138.64988	0.010238	3.8963E-06	1.5782	0.0006006	1.5884	0.00060449	380.5584834591908	76.66	0.65852	77.4	76.843	77.501	0.74052					13	12	2	0	0	0	0.93405	1	29049	29049		2.8433	0	1	497260	+		61122	26290	44595	44946	59558	59558					0.08609997639632638
VTNSNANAAS	10	Unmodified	_VTNSNANAAS_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;NOMO1|p.Q465Kfs*4|1|0.07|ENSG00000103512|chr16:14863184-14863185|-/AAGAC|frameshift_variant	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	A375_MHC_IP_R1	1	475.6606140136719	2	474.722695	947.430838	-0.51012	-0.00024216	-0.3801	-0.00018044	-0.89021	-0.0004226	474.7225104456237	50.581	0.55829	50.581	50.357	50.915	0					22	10	3	0	0	0	0.70334	1	17970	17970		10.8	2.0541	1	5652900			61123	2432	44596	44947	59559	59559					-0.044980583896744974
VTNTSDLILF	10	Unmodified	_VTNTSDLILF_					0	0	0			REV__ENSG00000169403|ENST00000373857|PTAFR	REV__ENSG00000169403|ENST00000373857|PTAFR	MULTI-SECPEP	A375_MHC_IP_R1	1	374.4335632324219	3	374.87289	1121.59684	0.32412	0.0001215	-0.45494	-0.00017054	-0.13082	-4.9039E-05	375.2068652907654	37.684	0.45848	37.684	37.505	37.964	0					13	8	2	0	0	0	0.93615	1	12805	12805		0.13989	0	1	1284000	+		61124	20930	44597	44948	59560	59560					0.04090575066334168
VTNYILLKR	9	Unmodified	_VTNYILLKR_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R1	1	374.6250915527344	3	373.901003	1118.68118	0.20068	7.5034E-05	-0.17174	-6.4213E-05	0.028941	1.0821E-05	373.90091066729	52.764	0.50819	52.764	52.438	52.946	0					23	9	3	0	0	0	0.65748	2	18694	18683;18694		10.8	2.2047	1	1852800			61125	6151;14694	44598	44949	59561;59562	59562					0.1265857067376146
VTPDMMEEMY	10	Unmodified	_VTPDMMEEMY_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000434805.1_1_1:35816564-35817152:+|nuORF;ENST00000465511.1_1_11:118431647-118432142:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MSMS	A375_MHC_IP_R1	1	623.3081665039062	2	623.245443	1244.47633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.757	1	93.757	93.257	94.257	0								0	0	0	0.1552	1	34463	34463		3.9444	0.66309	1				61126	3779	44599	44950	59563	59563					-0.1361266030544357
VTPDQPILVEV	11	Unmodified	_VTPDQPILVEV_					0	0	0		ENSG00000173705|ENST00000309558|SUSD5	ENSG00000173705|ENST00000309558|SUSD5	ENSG00000173705|ENST00000309558|SUSD5	MULTI-SECPEP	A375_MHC_IP_R2	2	404.295654296875	3	403.895695	1208.66525	-0.3074	-0.00012416	-0.18641	-7.5291E-05	-0.49382	-0.00019945	403.89560120215384	20.174	0.86152	20.784	20.349	21.21	0.61029					42	16	3	0	0	0	0.99165	1	6181	6181		8.7518	0.46535	1	21979000			61127	7822	44600	44951	59564	59564					0.06926819646173499
VTPEKNVIVT	10	Unmodified	_VTPEKNVIVT_					0	0	0		tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	367.4964904785156	3	367.216768	1098.62847	0.08751	3.2135E-05	0.28598	0.00010502	0.37349	0.00013715	367.2168048042562	65.086	0.55916	65.825	65.613	66.172	0.73811					26	10	3	0	0	0	0.71361	1	24732	24732		3.3196	0	1	3774300			61128	29475	44601	44952	59565	59565					0.08310567820285542
VTPEPMGL	8	Unmodified	_VTPEPMGL_					0	0	0			REV__TOMM7|p.P42L|1|0.16|ENSG00000196683|chr7:22818027-22818027|G/A|missense_variant	REV__TOMM7|p.P42L|1|0.16|ENSG00000196683|chr7:22818027-22818027|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	843.9329833984375	1	843.428067	842.42079	-0.51648	-0.00043561	0.83115	0.00070101	0.31467	0.0002654	843.4286352377402	148.27	0.30118	148.29	148.18	148.48	0.018707					10	7	2	0	0	0	0.972	1	57553	57553		0	0	1	57146	+		61129	28151	44602	44953	59566	59566					-0.006723376485751942
VTPEVRRQL	9	Unmodified	_VTPEVRRQL_					0	0	0			REV__nc|ENSG00000179344|P01920|HLA-DQB1	REV__nc|ENSG00000179344|P01920|HLA-DQB1	MULTI-SECPEP	A375_MHC_IP_R2	2	548.690673828125	2	549.324922	1096.63529	-0.78276	-0.00042999	-0.24852	-0.00013652	-1.0313	-0.00056651	549.3248648039727	62.766	0.3514	63.509	63.333	63.685	0.74263					10	6	2	0	0	0	0.50702	1	23814	23814		25.399	0	1	2267300	+		61130	27383	44603	44954	59567	59567					0.0908392549151813
VTPFLESKN	9	Unmodified	_VTPFLESKN_					0	0	0			REV__CAD|p.L1329F|1|0.27|ENSG00000084774|chr2:27235551-27235551|C/T|missense_variant	REV__CAD|p.L1329F|1|0.27|ENSG00000084774|chr2:27235551-27235551|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	517.7055053710938	2	517.779482	1033.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.473	1	49.473	48.973	49.973	0								0	0	0	0.14851	1	17497	17497		24.021	1.2843	1		+		61131	15559	44604	44955	59568	59568					0.028980367233771176
VTPGLSFFNL	10	Unmodified	_VTPGLSFFNL_					0	0	0		KIF4A|p.P1157L|1|0.74|ENSG00000090889|chrX:70419758-70419758|C/T|missense_variant	KIF4A|p.P1157L|1|0.74|ENSG00000090889|chrX:70419758-70419758|C/T|missense_variant	KIF4A|p.P1157L|1|0.74|ENSG00000090889|chrX:70419758-70419758|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	548.2213745117188	2	547.797675	1093.5808	-0.46495	-0.0002547	2.6702	0.0014627	2.2053	0.0012081	547.7986649099238	96.694	0.45604	96.694	96.478	96.934	0					14	8	3	0	0	0	0.70528	1	35539	35539		15.248	0	1	766490			61132	14217	44605	44956	59569	59569					0.03774913620077314
VTPGSGGA	8	Unmodified	_VTPGSGGA_					0	0	0			REV__ENSG00000234409|ENST00000439765|CCDC188	REV__ENSG00000234409|ENST00000439765|CCDC188	MULTI-SECPEP	A375_MHC_IP_R1	1	644.998291015625	1	645.320231	644.312954	-0.70315	-0.00045376	0.71142	0.0004591	0.0082679	5.3354E-06	645.3225614269618	67.11	0.46111	67.11	66.836	67.297	0					12	8	2	0	0	0	0.972	1	24367	24367		2.5775	0	1	625890	+		61133	22751	44606	44957	59570	59570					-0.02342966187654838
VTPGSWSR	8	Unmodified	_VTPGSWSR_					0	0	0		ENSG00000275004|ENST00000626650|ZNF280B	ENSG00000275004|ENST00000626650|ZNF280B	ENSG00000275004|ENST00000626650|ZNF280B	MULTI-SECPEP	A375_MHC_IP_R2	2	445.6298828125	2	445.229959	888.445365	-0.50406	-0.00022442	0.13912	6.1941E-05	-0.36494	-0.00016248	445.22988763255375	28.053	0.55823	28.731	28.401	28.96	0.67857					26	10	3	0	0	0	0.60242	1	9625	9625		46.021	3.9264	1	12476000			61134	10007	44607	44958	59571	59571					-0.0033194145086099525
VTPKGRAA	8	Unmodified	_VTPKGRAA_					0	0	0		nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;nc|ENSG00000128815|Q6ZS81-3|WDFY4	nc|ENSG00000128815|Q6ZS81-5|WDFY4	nc|ENSG00000128815|Q6ZS81-5|WDFY4	MULTI-SECPEP	A375_MHC_IP_R1	1	399.6083679199219	2	400.24287	798.471186	-0.32262	-0.00012913	1.1249	0.00045024	0.80229	0.00032111	400.2433318493809	38.537	0.4613	38.537	38.268	38.73	0					11	8	2	0	0	0	0.972	1	13110	13110		12.532	1.7076	1	1553700			61135	4164	44608	44959	59572	59572					0.063889527914057
VTPKLLENL	9	Unmodified	_VTPKLLENL_					0	0	0		OR5D13|p.L217Ifs*46|1|0.21|ENSG00000279761|chr11:55774082-55774089|CATTCTGA/-|frameshift_variant;ENSG00000279761|ENST00000623930|OR5D13;ENSG00000186113|ENST00000335605|OR5D14	OR5D13|p.L217Ifs*46|1|0.21|ENSG00000279761|chr11:55774082-55774089|CATTCTGA/-|frameshift_variant	OR5D13|p.L217Ifs*46|1|0.21|ENSG00000279761|chr11:55774082-55774089|CATTCTGA/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	513.1925048828125	2	513.813325	1025.6121	-0.70351	-0.00036147	-0.82442	-0.0004236	-1.5279	-0.00078507	514.316130025182	70.319	0.50948	71.053	70.793	71.302	0.73421					11	9	2	0	0	0	0.69504	1	26569	26569		7.9102	0	1	1070300			61136	8720	44609	44960	59573	59573					0.10031486654179389
VTPKRFIRLP	10	Unmodified	_VTPKRFIRLP_					0	0	0		ENST00000344204.8_1_5:14336708-14336831:+|nuORF	ENST00000344204.8_1_5:14336708-14336831:+|nuORF	ENST00000344204.8_1_5:14336708-14336831:+|nuORF	MSMS	A375_MHC_IP_R2	2	613.7916259765625	2	613.890232	1225.76591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.83	1	109.58	109.08	110.08	0.74684								0	0	0	0.15435	1	41085	41085		6.7232	2.7788	1				61137	10893	44610	44961	59574	59574					0.16205941210341734
VTPKSYLSF	9	Unmodified	_VTPKSYLSF_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8;ENSG00000039139|ENST00000265104|DNAH5	nc|ENSG00000124721|Q96JB1-2|DNAH8;ENSG00000039139|ENST00000265104|DNAH5	nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-SECPEP	A375_MHC_IP_R1	1	521.1714477539062	2	521.2844	1040.55425	-0.51177	-0.00026678	1.4183	0.00073934	0.90653	0.00047256	521.2846341804192	96.065	0.7623	96.065	95.716	96.478	0					21	14	3	0	0	0	0.67483	1	35325	35325		10.074	0	1	1721100			61138	3923;1157	44611	44962	59575	59575					0.035592247287468126
VTPLKFSKI	9	Unmodified	_VTPLKFSKI_					0	0	0		ENSG00000262406|ENST00000571244|MMP12	ENSG00000262406|ENST00000571244|MMP12	ENSG00000262406|ENST00000571244|MMP12	MULTI-SECPEP	A375_MHC_IP_R2	2	517.1712646484375	2	516.826235	1031.63792	-0.73792	-0.00038138	0.38131	0.00019707	-0.35661	-0.0001843	516.8263278033503	70.646	0.55705	71.38	70.946	71.503	0.73421					13	10	2	0	0	0	0.47368	1	26814	26814		34.102	7.2188	1	1730400			61139	9945	44612	44963	59576	59576					0.12336380896454102
VTPPIHLG	8	Unmodified	_VTPPIHLG_					0	0	0			REV__nc|ENSG00000108963|Q9BZG8-5|DPH1	REV__nc|ENSG00000108963|Q9BZG8-5|DPH1	MULTI-SECPEP	A375_MHC_IP_R1	1	834.00146484375	1	833.487965	832.480688	-0.32761	-0.00027306	0.060166	5.0148E-05	-0.26744	-0.00022291	833.4879568915751	50.859	0.35365	50.859	50.663	51.017	0					9	6	2	0	0	0	0.972	1	18005	18005		0.69038	0	1	1619600	+		61140	27168	44613	44964	59577	59577					0.057747210769548474
VTPSDNQGF	9	Unmodified	_VTPSDNQGF_					0	0	0			REV__CARF|p.S37F|2|0.28|ENSG00000138380|chr2:202942771-202942771|C/T|missense_variant	REV__CARF|p.S37F|2|0.28|ENSG00000138380|chr2:202942771-202942771|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	483.1214904785156	2	482.722164	963.429775	-0.49042	-0.00023674	-0.48506	-0.00023415	-0.97548	-0.00047088	482.7217786301068	91.62	0.76004	92.354	92.071	92.831	0.7345					29	14	3	0	0	0	0.65721	1	34951	34951		10.824	0.64053	1	3824500	+		61141	15576	44614	44965	59578	59578					-0.05340272758564879
VTPSEKAYEKP	11	Unmodified	_VTPSEKAYEKP_					0	0	0		ENSG00000143621|ENST00000361891|ILF2;ENST00000480213.1_1_1:153634874-153635650:-|nuORF	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	A375_MHC_IP_R2	2	624.6777954101562	2	624.82716	1247.63977	-0.79735	-0.0004982	-0.083545	-5.2201E-05	-0.88089	-0.00055041	624.8269716264006	70.693	0.75829	71.427	71.048	71.806	0.73421					34	14	4	0	0	0	0.72869	1	26937	26937		10.151	1.995	1	12645000			61142	5414	44615	44966	59579	59579					0.02585345123748084
VTPSRRPT	8	Unmodified	_VTPSRRPT_					0	0	0		nc|ENSG00000122490|Q8N2U9-3|SLC66A2	nc|ENSG00000122490|Q8N2U9-3|SLC66A2	nc|ENSG00000122490|Q8N2U9-3|SLC66A2	MULTI-MSMS	A375_MHC_IP_R1	1	457.664794921875	2	457.264333	912.514114	-0.13296	-6.0799E-05	0.27225	0.00012449	0.13929	6.3693E-05	457.2643529469833	104.84	4.938	104.84	103.12	108.05	0					218	96	4	0	0	0	0.77488	1	38203	38203		13.508	0	1	9867800			61143	14571	44616	44967	59580	59580					0.054357228488470355
VTPTKIDDI	9	Unmodified	_VTPTKIDDI_					0	0	0		nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	nc|ENSG00000140199|Q9UHW9-3|SLC12A6	nc|ENSG00000140199|Q9UHW9-3|SLC12A6	MULTI-MSMS	A375_MHC_IP_R1	1	501.187255859375	2	501.279315	1000.54408	-0.30747	-0.00015413	-2.5966	-0.0013016	-2.904	-0.0014557	501.2790619126908	54.622	0.35526	54.622	54.415	54.771	0					10	6	3	0	0	0	0.17338	1	19561	19561		39.95	3.4435	1	927950			61144	5129	44617	44968	59581	59581					0.04382617003534506
VTPTKIDDI	9	Unmodified	_VTPTKIDDI_					0	0	0		nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	nc|ENSG00000140199|Q9UHW9-3|SLC12A6	nc|ENSG00000140199|Q9UHW9-3|SLC12A6	MULTI-MATCH	A375_MHC_IP_R2	2		2	501.279315	1000.54408	-1.0535	-0.00052809	-4.2097	-0.0021102	-5.2632	-0.0026383	501.777223668751	53.78	0.20382	54.531	54.353	54.557	0.75105	-0.045585	-0.0013669	NaN	39.95	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	896830			61145	5129	44617	44968							0.04382617003534506
VTPTKTRCLT	10	Unmodified	_VTPTKTRCLT_					0	0	0		ENST00000557439.5_1_14:104171572-104171944:-|nuORF	ENST00000557439.5_1_14:104171572-104171944:-|nuORF	ENST00000557439.5_1_14:104171572-104171944:-|nuORF	MSMS	A375_MHC_IP_R2	2	560.251220703125	2	560.313166	1118.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.365	1	94.104	93.604	94.604	0.73902								0	0	0	0.15038	1	35495	35495		17.113	0	1				61146	13451	44618	44969	59582	59582					0.057217436626842755
VTPTVNLLL	9	Unmodified	_VTPTVNLLL_					0	0	0			REV__ENSG00000136021|ENST00000360820|SCYL2	REV__ENSG00000136021|ENST00000360820|SCYL2	MULTI-SECPEP	A375_MHC_IP_R1	1	485.7021789550781	2	485.302593	968.590633	-0.30582	-0.00014841	-0.95835	-0.00046509	-1.2642	-0.0006135	485.30191582440546	76.042	0.40424	76.042	75.915	76.319	0					11	7	2	0	0	0	0.49205	1	27750	27750		16.149	0	1	1680900	+		61147	18910	44619	44970	59583	59583					0.10508101625475774
VTPVGRIEMF	10	Oxidation (M)	_VTPVGRIEM(Oxidation (M))F_		VTPVGRIEM(1)F		VTPVGRIEM(48)F	0	0	1			REV__ENST00000468090.5_1_21:45179263-45179407:+|nuORF	REV__ENST00000468090.5_1_21:45179263-45179407:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	583.2074584960938	2	582.807716	1163.60088	-0.52596	-0.00030653	-0.73524	-0.00042851	-1.2612	-0.00073504	583.3084214862787	67.519	3.049	67.519	66.072	69.121	0					95	59	2	0	0	0	0.21466	1	24059	24059		47.749	14.963	1	3734400	+		61148	25076	44620	44971	59584	59584		488			0.025623412883760466
VTPVGRIEMF	10	Unmodified	_VTPVGRIEMF_					0	0	0			REV__ENST00000468090.5_1_21:45179263-45179407:+|nuORF	REV__ENST00000468090.5_1_21:45179263-45179407:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	575.2099609375	2	574.810259	1147.60597	-0.4099	-0.00023561	-0.14473	-8.319E-05	-0.55462	-0.0003188	574.8101820178049	85.623	0.96279	85.623	85.261	86.224	0					43	18	3	0	0	0	0.38709	1	31332	31332		34.932	4.2955	1	12806000	+		61149	25076	44620	44972	59585	59585					0.03806645151007615
VTPVNKLL	8	Unmodified	_VTPVNKLL_					0	0	0		nc|ENSG00000227942|Q9BZ68|FRMD8P1	nc|ENSG00000227942|Q9BZ68|FRMD8P1	nc|ENSG00000227942|Q9BZ68|FRMD8P1	MULTI-SECPEP	A375_MHC_IP_R2	2	442.6531982421875	2	442.284203	882.553853	-0.37627	-0.00016642	0.065374	2.8914E-05	-0.31089	-0.0001375	442.284125004258	31.435	0.30721	32.153	31.974	32.282	0.71857					7	5	2	0	0	0	0.972	1	11119	11119		4.756	4.2312	1	977670			61150	14908	44621	44973	59586	59586					0.10787849799555715
VTPVNKLL	8	Unmodified	_VTPVNKLL_					0	0	0		nc|ENSG00000227942|Q9BZ68|FRMD8P1	nc|ENSG00000227942|Q9BZ68|FRMD8P1	nc|ENSG00000227942|Q9BZ68|FRMD8P1	MULTI-MATCH	A375_MHC_IP_R1	1		2	442.284203	882.553853	-0.26622	-0.00011774	0.46386	0.00020516	0.19764	8.7415E-05	442.28434155384616	32.408	0.30412	32.408	32.231	32.535	0	0.12724	0.00017776	NaN	4.756	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1280800			61151	14908	44621	44973							0.10787849799555715
VTPVTTSVLVL	11	Unmodified	_VTPVTTSVLVL_					0	0	0			REV__ENST00000568805.5_1_16:20809048-20811281:-|nuORF	REV__ENST00000568805.5_1_16:20809048-20811281:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	565.247802734375	2	564.847364	1127.68018	-0.25702	-0.00014517	0.73119	0.00041301	0.47418	0.00026784	564.8478088987696	72.422	0.40482	72.422	72.22	72.625	0					19	7	3	0	0	0	0.95991	1	26364	26364		8.7454	3.4485	1	2414800	+		61152	22222	44622	44974	59587	59587					0.12144311514180117
VTPYLKRLS	9	Unmodified	_VTPYLKRLS_					0	0	0			REV__ENST00000355143.8_1_22:30822770-30824521:+|nuORF	REV__ENST00000355143.8_1_22:30822770-30824521:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	359.6013488769531	3	359.553603	1075.63898	0.27114	9.7489E-05	-0.55009	-0.00019779	-0.27895	-0.0001003	359.55331583583563	45.804	0.35549	45.804	45.585	45.941	0					12	6	2	0	0	0	0.64971	1	16031	16031		11.495	1.3441	1	1877900	+		61153	22797	44623	44975	59588	59588					0.10418595265377917
VTPYLKRLS	9	Unmodified	_VTPYLKRLS_					0	0	0			REV__ENST00000355143.8_1_22:30822770-30824521:+|nuORF	REV__ENST00000355143.8_1_22:30822770-30824521:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	359.60113525390625	3	359.553603	1075.63898	-0.33722	-0.00012125	-0.29536	-0.0001062	-0.63257	-0.00022744	359.55352284792235	44.815	0.35968	45.584	45.39	45.75	0.7691					12	6	2	0	0	0	0.64971	1	16780	16780		11.495	1.9507	1	1525500	+		61154	22797	44623	44975	59589	59589					0.10418595265377917
VTPYLKRLS	9	Unmodified	_VTPYLKRLS_					0	0	0			REV__ENST00000355143.8_1_22:30822770-30824521:+|nuORF	REV__ENST00000355143.8_1_22:30822770-30824521:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	359.553603	1075.63898	-0.33722	-0.00012125	-0.29536	-0.0001062	-0.63257	-0.00022744	359.55352284792235	44.815	0.35968	45.584	45.39	45.75	0.7691	-0.10985	0.00015814	NaN	11.495	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1525500	+		61155	22797	44623	44975							0.10418595265377917
VTQAKLTEGLY	11	Unmodified	_VTQAKLTEGLY_					0	0	0		INVS|p.G842E|1|0.29|ENSG00000119509|chr9:100292782-100292782|G/A|missense_variant	INVS|p.G842E|1|0.29|ENSG00000119509|chr9:100292782-100292782|G/A|missense_variant	INVS|p.G842E|1|0.29|ENSG00000119509|chr9:100292782-100292782|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	612.2372436523438	2	611.837528	1221.6605	-0.72016	-0.00044062	0.427	0.00026125	-0.29316	-0.00017937	611.837530157356	67.879	0.65864	67.879	67.399	68.057	0					32	12	4	0	0	0	0.7254	1	24579	24579		26.021	0	1	3736500			61156	14170	44624	44976	59590	59590					0.058539355034326945
VTQATQNTV	9	Unmodified	_VTQATQNTV_					0	0	0		ENSG00000163820|ENST00000296137|FYCO1;nc|ENSG00000163820|Q9BQS8-4|FYCO1;nc|ENSG00000163820|Q9BQS8-3|FYCO1;nc|ENSG00000163820|Q9BQS8-2|FYCO1	ENSG00000163820|ENST00000296137|FYCO1	ENSG00000163820|ENST00000296137|FYCO1	MULTI-SECPEP	A375_MHC_IP_R2	2	481.6509704589844	2	481.251089	960.487624	-0.55396	-0.00026659	-0.77738	-0.00037411	-1.3313	-0.00064071	481.25072934506517	103.12	0.76216	103.88	103.43	104.19	0.76428					30	14	3	0	0	0	0.69507	1	39028	39028		13.906	0.86358	1	4264500			61157	6729	44625	44977	59591	59591					0.005799891668630153
VTQAYLLNL	9	Unmodified	_VTQAYLLNL_					0	0	0			REV__ENST00000440760.5_1_2:27594325-27599583:+|nuORF	REV__ENST00000440760.5_1_2:27594325-27599583:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	517.7201538085938	2	517.797675	1033.5808	-0.69065	-0.00035762	0.34924	0.00018084	-0.3414	-0.00017678	517.7978309723846	96.029	0.35507	96.78	96.551	96.906	0.75045					9	6	2	0	0	0	0.47368	1	36391	36391		26.884	7.6267	1	1148600	+		61158	17865	44626	44978	59592	59592					0.06534913620089355
VTQDQLIFM	9	Unmodified	_VTQDQLIFM_					0	0	0			REV__ENST00000264220.6_1_4:57267056-57268281:-|nuORF	REV__ENST00000264220.6_1_4:57267056-57268281:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	366.2428894042969	3	365.523204	1093.54778	0.039581	1.4468E-05	0.0087089	3.1833E-06	0.04829	1.7651E-05	365.52297795172734	25.752	0.60793	25.752	25.46	26.068	0					21	11	3	0	0	0	0.73363	1	7485	7485		7.1017	0	1	3466100	+		61159	23232	44627	44979	59593	59593					0.004749635057351043
VTQEFKIDEE	10	Unmodified	_VTQEFKIDEE_					0	0	0		nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS	nc|ENSG00000119969|Q9NRZ9-6|HELLS	nc|ENSG00000119969|Q9NRZ9-6|HELLS	MSMS	A375_MHC_IP_R1	1	619.2218627929688	2	619.300975	1236.5874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.57	1	101.57	101.07	102.07	0								0	0	0	0.14983	1	37329	37329		18.146	1.0335	1				61160	3642	44628	44980	59594	59594					-0.021432380098303838
VTQERDEVW	9	Unmodified	_VTQERDEVW_					0	0	0		ENSG00000169252|ENST00000305988|ADRB2	ENSG00000169252|ENST00000305988|ADRB2	ENSG00000169252|ENST00000305988|ADRB2	MULTI-SECPEP	A375_MHC_IP_R1	1	580.6561279296875	2	581.280377	1160.5462	-0.30532	-0.00017747	-0.63204	-0.00036739	-0.93736	-0.00054487	581.2800276252088	52.525	0.60989	52.525	52.336	52.946	0					21	11	3	0	0	0	0.74412	1	18821	18821		1.3295	0	1	4606800			61161	7397	44629	44981	59595	59595					-0.027649542586686948
VTQGGKVIW	9	Unmodified	_VTQGGKVIW_					0	0	0		ENSG00000164346|ENST00000610426|NSA2	ENSG00000164346|ENST00000610426|NSA2	ENSG00000164346|ENST00000610426|NSA2	MULTI-SECPEP	A375_MHC_IP_R1	1	494.6844177246094	2	494.284734	986.554916	-0.51994	-0.000257	0.48231	0.0002384	-0.037625	-1.8598E-05	494.2849347276623	46.876	0.71729	46.876	46.545	47.263	0					18	13	2	0	0	0	0.16764	1	16493	16493		60.074	5.3004	1	2703800			61162	6831	44630	44982	59596	59596					0.0611006416845612
VTQGGKVIW	9	Unmodified	_VTQGGKVIW_					0	0	0		ENSG00000164346|ENST00000610426|NSA2	ENSG00000164346|ENST00000610426|NSA2	ENSG00000164346|ENST00000610426|NSA2	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1609802246094	2	494.284734	986.554916	-0.44882	-0.00022185	-0.33352	-0.00016485	-0.78234	-0.0003867	494.2847075269191	45.973	0.45279	46.738	46.403	46.855	0.76519					14	8	2	0	0	0	0.14572	1	17142	17142		45.7	0	1	2174500			61163	6831	44630	44982	59597	59597					0.0611006416845612
VTQGTLEIL	9	Unmodified	_VTQGTLEIL_					0	0	0		nc|ENSG00000163870|Q86W33-2|TPRA1;nc|ENSG00000163870|Q86W33-3|TPRA1;ENSG00000163870|ENST00000355552|TPRA1	nc|ENSG00000163870|Q86W33-2|TPRA1	nc|ENSG00000163870|Q86W33-2|TPRA1	MULTI-SECPEP	A375_MHC_IP_R2	2	486.666748046875	2	487.281857	972.549162	-0.49518	-0.00024129	2.2747	0.0011084	1.7795	0.00086711	487.28221814449967	69.44	0.30287	70.174	69.931	70.233	0.73421					8	5	2	0	0	0	0.58271	1	26274	26274		10.074	0	1	541790			61164	6735	44631	44983	59598	59598					0.061789208661252815
VTQHTGWQPV	10	Unmodified	_VTQHTGWQPV_					0	0	0			REV__ENSG00000174231|ENST00000304992|PRPF8	REV__ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	A375_MHC_IP_R2	2	577.1795654296875	2	576.793455	1151.57236	-0.46134	-0.0002661	-1.1277	-0.00065046	-1.5891	-0.00091656	576.7926663939937	38.785	0.76495	39.56	39.098	39.863	0.77451					19	14	2	0	0	0	0.88918	1	14179	14179		13.042	0	1	3157100	+		61165	21274	44632	44984	59599	59599					0.002633597034673585
VTQIGQKGY	9	Unmodified	_VTQIGQKGY_					0	0	0		DNAH9|p.S4145Ffs*44|1|0.38|ENSG00000007174|chr17:11934016-11934016|C/-|frameshift_variant;nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9	DNAH9|p.S4145Ffs*44|1|0.38|ENSG00000007174|chr17:11934016-11934016|C/-|frameshift_variant	DNAH9|p.S4145Ffs*44|1|0.38|ENSG00000007174|chr17:11934016-11934016|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	498.2292785644531	2	497.271824	992.529095	-0.87621	-0.00043571	-0.22765	-0.00011321	-1.1039	-0.00054892	497.27164373636464	38.45	0.71332	39.225	38.843	39.556	0.77451					43	13	5	0	0	0	0.32899	1	14230	14230		28.487	1.6032	1	46980000			61166	776	44633	44985	59600	59600					0.03253169926188093
VTQIRLVSA	9	Unmodified	_VTQIRLVSA_					0	0	0			REV__ENSG00000119574|ENST00000594051|ZBTB45	REV__ENSG00000119574|ENST00000594051|ZBTB45	MULTI-SECPEP	A375_MHC_IP_R1	1	494.1512145996094	2	493.803291	985.59203	-0.34311	-0.00016943	0.43535	0.00021498	0.092241	4.5549E-05	493.8034739743251	60.134	0.6605	60.134	59.854	60.514	0					36	12	4	0	0	0	0.056023	1	21648	21648		66.457	8.7347	1	24216000	+		61167	18078	44634	44986	59601	59601					0.09865735714231505
VTQIRLVSA	9	Unmodified	_VTQIRLVSA_					0	0	0			REV__ENSG00000119574|ENST00000594051|ZBTB45	REV__ENSG00000119574|ENST00000594051|ZBTB45	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1502380371094	2	493.803291	985.59203	-0.8961	-0.0004425	-0.24849	-0.00012271	-1.1446	-0.0005652	493.803155604413	59.124	0.86	59.871	59.59	60.45	0.74714					38	16	3	0	0	0	0.13208	1	22410	22410		49.554	0	1	24165000	+		61168	18078	44634	44986	59602	59602					0.09865735714231505
VTQKMQTYF	9	Unmodified	_VTQKMQTYF_					0	0	0			REV__ENST00000587757.5_1_18:13611494-13611524:+|nuORF	REV__ENST00000587757.5_1_18:13611494-13611524:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	573.1851196289062	2	573.286617	1144.55868	-0.20333	-0.00011656	-0.32012	-0.00018352	-0.52345	-0.00030008	573.2863336760176	27.598	0.96489	28.276	27.741	28.706	0.67857					64	18	5	0	0	0	0.60101	1	9292	9292		14.838	0.93222	1	76286000	+		61169	26403	44635	44987	59603	59603					-0.007816341199941235
VTQLHLRVP	9	Unmodified	_VTQLHLRVP_					0	0	0			REV__ENSG00000062582|ENST00000317534|MRPS24	REV__ENSG00000062582|ENST00000317534|MRPS24	MULTI-MSMS	A375_MHC_IP_R2	2	532.03759765625	2	531.824558	1061.63456	-0.95395	-0.00050734	0.15446	8.2146E-05	-0.79949	-0.00042519	531.8245956737862	49.716	0.5608	50.47	50.193	50.753	0.75406					32	10	4	0	0	0	0.72761	1	18743	18743		7.2892	0	1	17978000	+		61170	16460	44636	44988	59604	59604					0.10621130842469029
VTQLQPIVQY	10	Unmodified	_VTQLQPIVQY_					0	0	0			REV__ENSG00000105866|ENST00000222584|SP4	REV__ENSG00000105866|ENST00000222584|SP4	MULTI-MSMS	A375_MHC_IP_R1	1	397.2914733886719	3	396.892284	1187.65502	0.0001656	6.5724E-08	-1.3157	-0.00052217	-1.3155	-0.00052211	396.8914221372022	23.036	0.85946	23.036	22.623	23.483	0					41	16	4	0	0	0	0.66857	1	6223	6223		15.739	2.866	1	16010000	+		61171	17414	44637	44989	59605	59605					0.06870256711590628
VTQLRQIY	8	Unmodified	_VTQLRQIY_					0	0	0			REV__ENSG00000284024|ENST00000640019|MSANTD7	REV__ENSG00000284024|ENST00000640019|MSANTD7	MULTI-SECPEP	A375_MHC_IP_R1	1	511.19671630859375	2	510.795466	1019.57638	-0.44724	-0.00022845	2.389	0.0012203	1.9418	0.00099184	510.7967358604435	74.964	0.75899	74.964	74.553	75.312	0					19	14	2	0	0	0	0.73563	1	27361	27361		28.487	0	1	2208600	+		61172	23000	44638	44990	59606	59606					0.06737449197180467
VTQNRASRSSW	11	Unmodified	_VTQNRASRSSW_					0	0	0		PKP2|p.K768Rfs*8|1|0.13|ENSG00000057294|chr12:32796282-32796295|AGGGAGAGTTTCTT/-|frameshift_variant;ENSG00000057294|ENST00000340811|PKP2;nc|ENSG00000057294|Q99959|PKP2	PKP2|p.K768Rfs*8|1|0.13|ENSG00000057294|chr12:32796282-32796295|AGGGAGAGTTTCTT/-|frameshift_variant	PKP2|p.K768Rfs*8|1|0.13|ENSG00000057294|chr12:32796282-32796295|AGGGAGAGTTTCTT/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	431.28790283203125	3	431.221575	1290.6429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.396	1	52.148	51.648	52.648	0.75225								0	0	0	0.16182	1	19340	19340		9.2438	0.95734	1				61173	1283	44639	44991	59607	59607					0.009200330211342589
VTQPDIHI	8	Unmodified	_VTQPDIHI_					0	0	0		nc|ENSG00000211787|A0A0A6YYJ7|TRAV8-3	nc|ENSG00000211787|A0A0A6YYJ7|TRAV8-3	nc|ENSG00000211787|A0A0A6YYJ7|TRAV8-3	MULTI-SECPEP	A375_MHC_IP_R2	2	461.301513671875	2	461.753267	921.491981	-0.56638	-0.00026153	-0.51614	-0.00023833	-1.0825	-0.00049986	461.75317504336175	45.138	0.40455	45.904	45.747	46.152	0.76669					12	7	2	0	0	0	0.95423	1	16884	16884		7.9102	0	1	1503300			61174	14879	44640	44992	59608	59608					0.028094983804294316
VTQQMWVY	8	Unmodified	_VTQQMWVY_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6621704101562	2	527.754953	1053.49535	-0.49062	-0.00025892	1.7514	0.00092429	1.2607	0.00066536	527.7555595779448	76.647	0.35564	77.388	77.095	77.451	0.74052					8	6	2	0	0	0	0.94479	1	28991	28991		8.5933	0	1	815000			61175	4347	44641	44993	59609	59609					-0.02925574837217937
VTQRGGLQL	9	Unmodified	_VTQRGGLQL_					0	0	0		ENST00000465431.6_1_X:48935109-48935754:-|nuORF;ENST00000465806.6_1_X:48935109-48935457:-|nuORF	ENST00000465431.6_1_X:48935109-48935754:-|nuORF	ENST00000465431.6_1_X:48935109-48935754:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	486.6870422363281	2	486.285266	970.555979	-0.57501	-0.00027962	3.4178	0.001662	2.8428	0.0013824	486.2867086460823	67.558	0.71333	68.295	68.001	68.715	0.73631					19	13	2	0	0	0	0.55471	1	25626	25626		17.113	0.1706	1	1584600			61176	12242	44642	44994	59610	59610					0.06952278537380607
VTQRGHRR	8	Unmodified	_VTQRGHRR_					0	0	0		nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2;CHPF2|p.E451K|1|0.96|ENSG00000033100|chr7:151237713-151237713|G/A|missense_variant	nc|ENSG00000033100|Q9P2E5-2|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	MULTI-SECPEP	A375_MHC_IP_R1	1	505.69140625	2	505.291748	1008.56894	-0.60951	-0.00030798	0.53064	0.00026813	-0.07887	-3.9852E-05	505.291822395671	131.86	0.55295	131.86	131.68	132.23	0					14	10	2	0	0	0	0.972	1	50844	50844		4.3292	4.3292	1	6506300			61177	1121	44643	44995	59611	59611					0.0650015444012979
VTQRGHRR	8	Unmodified	_VTQRGHRR_					0	0	0		nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2;CHPF2|p.E451K|1|0.96|ENSG00000033100|chr7:151237713-151237713|G/A|missense_variant	nc|ENSG00000033100|Q9P2E5-2|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	MULTI-MATCH	A375_MHC_IP_R2	2		2	505.291748	1008.56894	-0.6764	-0.00034178	0.54723	0.00027651	-0.12917	-6.527E-05	505.2919436010091	131.68	0.65717	131.87	131.65	132.3	0.18953	0.0088371	1.0454E-05	NaN	4.3292	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8590700			61178	1121	44643	44995							0.0650015444012979
VTQRGSRVL	9	Unmodified	_VTQRGSRVL_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	A375_MHC_IP_R2	2	507.666748046875	2	508.30399	1014.59343	-0.69639	-0.00035398	-3.0451	-0.0015479	-3.7415	-0.0019018	508.30196516890146	73.56	0.96757	74.295	73.887	74.855	0.73541					25	18	2	0	0	0	0.39388	1	28049	28049		25.399	0	1	1692800			61179	4099;14587	44644	44996	59612	59612					0.08671369803005291
VTQRLNSQW	9	Unmodified	_VTQRLNSQW_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;ENST00000461423.1_1_20:37137783-37175090:+|nuORF	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-SECPEP	A375_MHC_IP_R1	1	566.651123046875	2	566.298904	1130.58326	-0.44355	-0.00025118	1.4997	0.00084927	1.0561	0.00059809	566.2991241936602	37.033	0.45385	37.033	36.795	37.249	0					17	8	3	0	0	0	0.46121	1	12485	12485		32.037	13.891	1	2045800			61180	7511	44645	44997	59613	59613					0.023187620777662232
VTQRLNSQW	9	Unmodified	_VTQRLNSQW_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;ENST00000461423.1_1_20:37137783-37175090:+|nuORF	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-SECPEP	A375_MHC_IP_R2	2	566.69873046875	2	566.298904	1130.58326	-0.53195	-0.00030124	1.2898	0.00073043	0.75788	0.00042919	566.2991667551522	36.19	0.40849	36.96	36.749	37.157	0.7709					16	7	3	0	0	0	0.11887	1	13199	13199		55.235	13.395	1	3143400			61181	7511	44645	44997	59614	59614					0.023187620777662232
VTQRNLYLL	9	Unmodified	_VTQRNLYLL_					0	0	0		ENST00000263335.11_1_2:113976008-113976104:-|nuORF	ENST00000263335.11_1_2:113976008-113976104:-|nuORF	ENST00000263335.11_1_2:113976008-113976104:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	560.7294311523438	2	560.329673	1118.64479	-0.94262	-0.00052818	-0.20182	-0.00011308	-1.1444	-0.00064126	560.3293821714599	71.564	0.70914	72.298	72.01	72.72	0.73421					30	13	3	0	0	0	0.63327	1	27150	27150		18.146	0	1	8083200			61182	10318	44646	44998	59615	59615					0.09021693777026485
VTQSLQLL	8	Unmodified	_VTQSLQLL_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-SECPEP	A375_MHC_IP_R2	2	451.67083740234375	2	451.271293	900.528032	-0.71069	-0.00032071	0.13246	5.9777E-05	-0.57822	-0.00026094	451.27135749420995	56.959	0.45929	57.709	57.459	57.918	0.75014					14	8	2	0	0	0	0.64636	1	21537	21537		42.095	0	1	1567900			61183	1262	44647	44999	59616	59616					0.07378955557294375
VTQSSIRTPV	10	Unmodified	_VTQSSIRTPV_					0	0	0		ENSG00000078898|ENST00000170150|BPIFB2	ENSG00000078898|ENST00000170150|BPIFB2	ENSG00000078898|ENST00000170150|BPIFB2	MULTI-SECPEP	A375_MHC_IP_R2	2	362.9607238769531	3	363.208384	1086.60332	0.092319	3.3531E-05	2.4337	0.00088395	2.526	0.00091748	363.20962203816794	47.277	0.25592	48.038	47.867	48.123	0.76128					6	4	2	0	0	0	0.91556	1	17682	17682		1.5923	0	1	434900			61184	1685	44648	45000	59617	59617					0.06348513017701407
VTQTPQDLS	9	Unmodified	_VTQTPQDLS_					0	0	0			REV__nc|ENSG00000184110|Q99613-2|EIF3C	REV__nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	A375_MHC_IP_R1	1	495.1505432128906	2	494.750921	987.48729	-0.34734	-0.00017185	-0.40233	-0.00019906	-0.74967	-0.0003709	494.75065166818644	25.116	0.60897	25.116	24.953	25.562	0					20	11	2	0	0	0	0.0092471	1	7279	7279		103.35	35.273	1	11094000	+		61185	21796	44649	45001	59618	59618					-0.006954305530030069
VTQTPQDLS	9	Unmodified	_VTQTPQDLS_					0	0	0			REV__nc|ENSG00000184110|Q99613-2|EIF3C	REV__nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-SECPEP	A375_MHC_IP_R1	1	494.6514892578125	2	494.750921	987.48729	-0.34734	-0.00017185	-0.40233	-0.00019906	-0.74967	-0.0003709	494.75065166818644	25.116	0.60897	25.116	24.953	25.562	0					20	11	2	0	0	0	0.01147	1	7270	7270		110.55	32.403	1	11094000	+		61186	21796	44649	45001	59619	59619					-0.006954305530030069
VTQTPQDLS	9	Unmodified	_VTQTPQDLS_					0	0	0			REV__nc|ENSG00000184110|Q99613-2|EIF3C	REV__nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	A375_MHC_IP_R2	2	495.150390625	2	494.750921	987.48729	-0.82803	-0.00040967	-0.45566	-0.00022544	-1.2837	-0.0006351	494.7507069476761	24.505	0.50789	25.149	25.06	25.568	0.64368					12	9	2	0	0	0	0.02114	1	8081	8081		82.529	19.957	1	6956100	+		61187	21796	44649	45001	59620	59620					-0.006954305530030069
VTQTPQDLS	9	Unmodified	_VTQTPQDLS_					0	0	0			REV__nc|ENSG00000184110|Q99613-2|EIF3C	REV__nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	494.750921	987.48729	-0.82803	-0.00040967	-0.45566	-0.00022544	-1.2837	-0.0006351	494.7507069476761	24.505	0.50789	25.149	25.06	25.568	0.64368	0.016716	-2.6953E-05	NaN	103.35	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6956100	+		61188	21796	44649	45001							-0.006954305530030069
VTQVDKPYF	9	Unmodified	_VTQVDKPYF_					0	0	0			REV__ENSG00000126773|ENST00000406854|PCNX4	REV__ENSG00000126773|ENST00000406854|PCNX4	MSMS	A375_MHC_IP_R1	1	366.2428894042969	3	366.193963	1095.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.574	1	25.574	25.074	26.074	0								0	0	0	0.15438	1	7485	7485		14.405	6.7964	1		+		61189	18395	44650	45002	59621	59621					0.016103232404248047
VTQVDTALG	9	Unmodified	_VTQVDTALG_					0	0	0			REV__ENSG00000277791|ENST00000619426|PSMB3	REV__ENSG00000277791|ENST00000619426|PSMB3	MULTI-SECPEP	A375_MHC_IP_R1	1	451.6585388183594	2	452.242732	902.470912	-0.38447	-0.00017387	0.20659	9.3428E-05	-0.17788	-8.0446E-05	452.242751332191	36.812	1.1689	36.812	36.541	37.71	0					51	22	3	0	0	0	0.28216	1	12339	12339		41.84	11.203	1	25245000	+		61190	22974	44651	45003	59622	59622					0.015774882809068913
VTQVDTALG	9	Unmodified	_VTQVDTALG_					0	0	0			REV__ENSG00000277791|ENST00000619426|PSMB3	REV__ENSG00000277791|ENST00000619426|PSMB3	MULTI-SECPEP	A375_MHC_IP_R2	2	452.6424865722656	2	452.242732	902.470912	-0.41638	-0.0001883	0.050493	2.2835E-05	-0.36588	-0.00016547	452.24270352469927	35.943	1.3739	36.707	36.435	37.809	0.76338					57	26	4	0	0	0	0.14572	1	13291	13291		62.573	31.936	1	24693000	+		61191	22974	44651	45003	59623	59623					0.015774882809068913
VTQVEHISY	9	Unmodified	_VTQVEHISY_					0	0	0			REV__ADAMTS20|p.G939V|1|0.25|ENSG00000173157|chr12:43432716-43432716|C/A|missense_variant	REV__ADAMTS20|p.G939V|1|0.25|ENSG00000173157|chr12:43432716-43432716|C/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	538.6741943359375	2	538.274564	1074.53457	-0.76466	-0.0004116	0.022641	1.2187E-05	-0.74202	-0.00039941	538.2746593485803	47.133	0.51542	47.133	46.901	47.416	0					22	9	3	0	0	0	0.28216	1	16558	16558		49.933	9.9833	1	7697200	+		61192	15323	44652	45004	59624	59624					0.0002884871801143163
VTRAALGL	8	Unmodified	_VTRAALGL_					0	0	0			REV__ENSG00000172071|ENST00000303236|EIF2AK3	REV__ENSG00000172071|ENST00000303236|EIF2AK3	MULTI-SECPEP	A375_MHC_IP_R2	2	401.1527404785156	2	400.75307	799.491587	-0.064615	-2.5895E-05	-0.13434	-5.3837E-05	-0.19896	-7.9732E-05	400.7529581575496	32.344	0.40803	33.081	32.909	33.317	0.73691					11	7	2	0	0	0	0.88903	1	11523	11523		24.021	4.7636	1	2170100	+		61193	21119	44653	45005	59625	59625					0.0838212345121292
VTRALRVP	8	Unmodified	_VTRALRVP_					0	0	0			REV__nc|ENSG00000217128|Q8TF40-3|FNIP1	REV__nc|ENSG00000217128|Q8TF40-3|FNIP1	MULTI-MSMS	A375_MHC_IP_R1	1	456.6925354003906	2	456.292894	910.571235	-0.23266	-0.00010616	0.1433	6.5389E-05	-0.089356	-4.0773E-05	456.29292221497394	42.158	1.168	42.158	41.622	42.79	0					62	22	4	0	0	0	0.76248	1	14722	14722		16.942	3.4344	1	90084000	+		61194	22681	44654	45006	59626	59626					0.11237190125223151
VTRALRVP	8	Unmodified	_VTRALRVP_					0	0	0			REV__nc|ENSG00000217128|Q8TF40-3|FNIP1	REV__nc|ENSG00000217128|Q8TF40-3|FNIP1	MULTI-SECPEP	A375_MHC_IP_R1	1	456.6929016113281	2	456.292894	910.571235	-0.23266	-0.00010616	0.1433	6.5389E-05	-0.089356	-4.0773E-05	456.29292221497394	42.158	1.168	42.158	41.622	42.79	0					62	22	4	0	0	0	0.87643	1	14481	14481		32.305	9.1571	1	90084000	+		61195	22681	44654	45006	59627	59627					0.11237190125223151
VTRALRVP	8	Unmodified	_VTRALRVP_					0	0	0			REV__nc|ENSG00000217128|Q8TF40-3|FNIP1	REV__nc|ENSG00000217128|Q8TF40-3|FNIP1	MULTI-MSMS	A375_MHC_IP_R2	2	456.6927185058594	2	456.292894	910.571235	-0.48962	-0.00022341	0.019968	9.1111E-06	-0.46966	-0.0002143	456.2928585760463	41.145	1.2207	41.92	41.438	42.659	0.77451					60	23	4	0	0	0	0.7754	1	15403	15403		11.64	3.047	1	73225000	+		61196	22681	44654	45006	59628	59628					0.11237190125223151
VTRALRVP	8	Unmodified	_VTRALRVP_					0	0	0			REV__nc|ENSG00000217128|Q8TF40-3|FNIP1	REV__nc|ENSG00000217128|Q8TF40-3|FNIP1	MULTI-SECPEP	A375_MHC_IP_R2	2	456.69256591796875	2	456.292894	910.571235	-0.48962	-0.00022341	0.019968	9.1111E-06	-0.46966	-0.0002143	456.2928585760463	41.145	1.2207	41.92	41.438	42.659	0.77451					60	23	4	0	0	0	0.8957	1	15180	15180		21.747	12.399	1	73225000	+		61197	22681	44654	45006	59629	59629					0.11237190125223151
VTRDIVELLY	10	Unmodified	_VTRDIVELLY_					0	0	0			REV__ENST00000392432.6_1_3:194308694-194308883:-|nuORF	REV__ENST00000392432.6_1_3:194308694-194308883:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	611.2182006835938	2	610.847896	1219.68124	-0.70023	-0.00042773	1.562	0.00095416	0.8618	0.00052643	610.8488667353663	68.212	0.40613	68.212	68.006	68.412	0					12	7	2	0	0	0	0.83355	1	24708	24708		12.241	0	1	1544200	+		61198	24272	44655	45007	59630	59630					0.08018525883107941
VTRDLVTPI	9	Unmodified	_VTRDLVTPI_					0	0	0			REV__ENSG00000160200|ENST00000398165|CBS	REV__ENSG00000160200|ENST00000398165|CBS	MULTI-MSMS	A375_MHC_IP_R1	1	508.70208740234375	2	507.303124	1012.5917	-0.52837	-0.00026804	-1.3168	-0.00066799	-1.8451	-0.00093604	507.30296796879	65.641	2.0908	65.641	65.206	67.297	0					117	40	5	0	0	0	0.4867	1	23903	23903		20.454	2.3073	1	45125000	+		61199	20152	44656	45008	59631	59631					0.08590315994376851
VTRDLVTPI	9	Unmodified	_VTRDLVTPI_					0	0	0			REV__ENSG00000160200|ENST00000398165|CBS	REV__ENSG00000160200|ENST00000398165|CBS	MULTI-MSMS	A375_MHC_IP_R2	2	508.7018127441406	2	507.303124	1012.5917	-0.73718	-0.00037397	-1.1898	-0.00060359	-1.927	-0.00097756	507.30298131141086	64.798	2.2898	65.536	65.002	67.292	0.73811					111	44	5	0	0	0	0.4867	1	24690	24690		20.454	0.039092	1	48523000	+		61200	20152	44656	45008	59632	59632					0.08590315994376851
VTRDRSASAL	10	Unmodified	_VTRDRSASAL_					0	0	0			REV__ENST00000539190.6_1_12:89855074-89919672:-|nuORF	REV__ENST00000539190.6_1_12:89855074-89919672:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	537.6477661132812	2	538.296362	1074.57817	-0.78496	-0.00042254	-3.3625	-0.00181	-4.1474	-0.0022325	538.7962526790232	52.695	0.45838	52.695	52.438	52.897	0					15	8	4	0	0	0	0.92772	1	18696	18696		11.495	2.9014	1	2001500	+		61201	19149	44657	45009	59633	59633					0.0438645821514001
VTREAISL	8	Unmodified	_VTREAISL_					0	0	0		nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1;nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1	nc|ENSG00000160691|P29353-3|SHC1	nc|ENSG00000160691|P29353-3|SHC1	MULTI-SECPEP	A375_MHC_IP_R2	2	445.1606140136719	2	444.761092	887.507631	-0.32312	-0.00014371	-0.4912	-0.00021847	-0.81432	-0.00036218	444.7608463840442	42.094	0.61368	42.867	42.554	43.168	0.77319					18	11	2	0	0	0	0.83673	1	15641	15641		39.95	0	1	4509300			61202	6433	44658	45010	59634	59634					0.059377848974691005
VTREIKELF	9	Unmodified	_VTREIKELF_					0	0	0			REV__ENST00000473479.5_1_2:242274588-242275589:+|nuORF	REV__ENST00000473479.5_1_2:242274588-242275589:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	378.6084899902344	3	378.888763	1133.64446	0.23283	8.8216E-05	-0.068377	-2.5907E-05	0.16445	6.2308E-05	378.8885314476293	47.667	0.50833	48.428	48.174	48.682	0.76128					18	9	3	0	0	0	0.58268	1	17818	17818		15.739	2.22	1	3612200	+		61203	25151	44659	45011	59635	59635					0.08298274057187882
VTRERRNI	8	Unmodified	_VTRERRNI_					0	0	0		RBM33|p.E1103Gfs*12|1|0.21|ENSG00000184863|chr7:155766588-155766588|A/-|frameshift_variant;ENSG00000184863|ENST00000401878|RBM33;nc|ENSG00000184863|Q96EV2-2|RBM33	RBM33|p.E1103Gfs*12|1|0.21|ENSG00000184863|chr7:155766588-155766588|A/-|frameshift_variant	RBM33|p.E1103Gfs*12|1|0.21|ENSG00000184863|chr7:155766588-155766588|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	522.6954345703125	2	522.307064	1042.59957	-0.53921	-0.00028163	2.5511	0.0013325	2.0119	0.0010508	522.3085090864257	46.458	0.25	46.458	46.295	46.545	0					6	4	2	0	0	0	0.95423	1	16237	16237		7.9102	3.5809	1	553640			61204	8615	44660	45012	59636	59636					0.07997888034492462
VTRERVTL	8	Unmodified	_VTRERVTL_					0	0	0			REV__ENSG00000124006|ENST00000404537|OBSL1	REV__ENSG00000124006|ENST00000404537|OBSL1	MULTI-SECPEP	A375_MHC_IP_R2	2	486.620849609375	2	487.293091	972.571629	-0.77524	-0.00037777	-2.8673	-0.0013972	-3.6426	-0.001775	487.29135505855385	49.103	0.25381	49.86	49.741	49.995	0.75737					8	4	3	0	0	0	0.972	1	18411	18411		13.508	0	1	846850	+		61205	18266	44661	45013	59637	59637					0.08424565054417599
VTRFHINWE	9	Unmodified	_VTRFHINWE_					0	0	0		ENSG00000111875|ENST00000229595|ASF1A	ENSG00000111875|ENST00000229595|ASF1A	ENSG00000111875|ENST00000229595|ASF1A	MULTI-MSMS	A375_MHC_IP_R1	1	401.60858154296875	3	401.208607	1200.60399	-0.22391	-8.9836E-05	-0.75572	-0.0003032	-0.97963	-0.00039304	401.2081752189905	20.356	0.40655	20.356	20.129	20.536	0					14	7	2	0	0	0	0.70307	1	5203	5203		4.1895	0	1	1874300			61206	3036	44662	45014	59638	59638					0.011713524574133771
VTRGAWYTGL	10	Unmodified	_VTRGAWYTGL_					0	0	0			REV__ENST00000496131.1_1_1:44442124-44442513:+|nuORF	REV__ENST00000496131.1_1_1:44442124-44442513:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	562.1558837890625	2	562.298373	1122.58219	-0.27894	-0.00015685	-1.8748	-0.0010542	-2.1537	-0.001211	562.2968263108004	78.822	0.96643	78.822	78.556	79.522	0					23	18	2	0	0	0	0.66308	1	28758	28758		16.149	3.1066	1	2098300	+		61207	25455	44663	45015	59639	59639					0.02580547708839731
VTRGPGSGP	9	Unmodified	_VTRGPGSGP_					0	0	0		ENST00000589048.1_1_19:14166031-14168295:-|nuORF	ENST00000589048.1_1_19:14166031-14168295:-|nuORF	ENST00000589048.1_1_19:14166031-14168295:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	414.99749755859375	2	414.222134	826.429715	0.028858	1.1954E-05	1.3376	0.00055407	1.3665	0.00056603	414.2225878548233	135.95	0.40942	135.95	135.64	136.05	0					12	7	3	0	0	0	0.80516	1	52280	52280		3.9444	0	1	723480			61208	13772	44664	45016	59640	59640					0.009557720321026864
VTRHLEDVF	9	Unmodified	_VTRHLEDVF_					0	0	0		ENST00000582461.1_1_18:72245409-72251014:+|nuORF;ENSG00000150656|ENST00000358821|CNDP1	ENST00000582461.1_1_18:72245409-72251014:+|nuORF	ENST00000582461.1_1_18:72245409-72251014:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	373.2783508300781	3	372.532979	1114.57711	0.38008	0.00014159	-0.39766	-0.00014814	-0.017576	-6.5475E-06	372.53287554732384	31.502	0.45596	31.502	31.363	31.819	0					12	8	2	0	0	0	0.76187	1	10071	10071		4.5289	0	1	1170800			61209	5857	44665	45017	59641	59641					0.02440243846217527
VTRIAAEL	8	Unmodified	_VTRIAAEL_					0	0	0			REV__ENSG00000109606|ENST00000336812|DHX15	REV__ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	A375_MHC_IP_R1	1	436.9380798339844	2	436.763635	871.512717	-0.15573	-6.8016E-05	-0.51149	-0.0002234	-0.66722	-0.00029142	436.7634532590129	55.304	0.35566	55.304	55.025	55.381	0					11	6	2	0	0	0	0.972	1	19687	19687		6.2058	0	1	1436500	+		61210	17584	44666	45018	59642	59642					0.071820887600893
VTRIIRDGGP	10	Unmodified	_VTRIIRDGGP_					0	0	0		ENST00000473136.4_2_3:88108451-88184391:+|nuORF;ENSG00000175105|ENST00000636215|ZNF654	ENST00000473136.4_2_3:88108451-88184391:+|nuORF	ENST00000473136.4_2_3:88108451-88184391:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	542.7166748046875	2	542.317097	1082.61964	-1.2776	-0.00069284	0.029264	1.587E-05	-1.2483	-0.00067697	542.3171925977788	25.481	0.6611	26.124	25.924	26.585	0.64368					27	12	3	0	0	0	0.92076	1	8523	8523		10.151	3.9448	1	6672000			61211	7934	44667	45019	59643	59643					0.08163638974474452
VTRITLAV	8	Unmodified	_VTRITLAV_					0	0	0			REV__ENST00000535684.5_1_12:64616213-64616276:+|nuORF	REV__ENST00000535684.5_1_12:64616213-64616276:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	437.1816711425781	2	436.781828	871.549102	-0.44209	-0.0001931	0.25112	0.00010969	-0.19097	-8.341E-05	436.7818561114174	65.561	0.76318	66.299	65.968	66.731	0.73811					31	14	3	0	0	0	0.5161	1	24876	24876		62.573	7.7991	1	9885900	+		61212	25908	44668	45020	59644	59644					0.10818965656790169
VTRKKYKRI	9	Unmodified	_VTRKKYKRI_					0	0	0		NOL4|p.E34K|1|0.28|ENSG00000101746|chr18:34223154-34223154|C/T|missense_variant	NOL4|p.E34K|1|0.28|ENSG00000101746|chr18:34223154-34223154|C/T|missense_variant	NOL4|p.E34K|1|0.28|ENSG00000101746|chr18:34223154-34223154|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	596.787353515625	2	596.387857	1190.76116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.995	1	29.995	29.495	30.495	0								0	0	0	0.15486	1	9473	9473		7.2892	0	1				61213	15012	44669	45021	59645	59645					0.1734105706759692
VTRLDEDF	8	Unmodified	_VTRLDEDF_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	A375_MHC_IP_R2	2	497.63531494140625	2	497.745639	993.476725	-0.76994	-0.00038323	0.24049	0.0001197	-0.52945	-0.00026353	497.74584975872625	71.371	0.65875	72.105	71.857	72.516	0.73421					19	12	2	0	0	0	0.7754	1	27184	27184		11.64	0	1	1149200	+		61214	22253	44670	45022	59646	59646					-0.02027413207429163
VTRLWHDLL	9	Unmodified	_VTRLWHDLL_					0	0	0			REV__ENST00000436140.2_1_10:25449038-25449203:+|nuORF	REV__ENST00000436140.2_1_10:25449038-25449203:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	385.28924560546875	3	384.888986	1151.64513	0.10588	4.0752E-05	0.19878	7.6508E-05	0.30466	0.00011726	384.88906936528485	68.509	0.5586	68.509	68.159	68.717	0					16	10	2	0	0	0	0.79713	1	24870	24870		3.8763	0	1	1892300	+		61215	24761	44671	45023	59647	59647					0.07537113496891834
VTRNGRNEG	9	Unmodified	_VTRNGRNEG_					0	0	0		ENST00000413272.6_1_8:27927872-27941294:-|nuORF	ENST00000413272.6_1_8:27927872-27941294:-|nuORF	ENST00000413272.6_1_8:27927872-27941294:-|nuORF	MSMS	A375_MHC_IP_R1	1	501.6927185058594	2	501.757404	1001.50025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.186	1	65.186	64.686	65.686	0								0	0	0	0.14851	1	23596	23596		24.021	7.0783	1				61216	11655	44672	45024	59648	59648					-0.00043554650233090797
VTRPDSGHLY	10	Unmodified	_VTRPDSGHLY_					0	0	0		nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;ENST00000525582.1_1_1:26873450-26873871:+|nuORF;ENST00000524436.5_1_1:26856411-26877988:+|nuORF;ENST00000530607.1_1_1:26872355-26877988:+|nuORF	nc|ENSG00000117676|Q15418-4|RPS6KA1	nc|ENSG00000117676|Q15418-4|RPS6KA1	MULTI-SECPEP	A375_MHC_IP_R2	2	381.9476623535156	3	382.196367	1143.56727	-0.53251	-0.00020352	0.30098	0.00011503	-0.23153	-8.8492E-05	382.1963971132415	25.482	0.40608	26.126	25.924	26.33	0.64368					17	7	3	0	0	0	0.91773	1	8524	8524		4.1166	2.6615	1	3021200			61217	3506	44673	45025	59649	59649					0.0012305584086789167
VTRPEQLL	8	Unmodified	_VTRPEQLL_					0	0	0		ENSG00000215910|ENST00000688073|C1orf167;nc|nan|Q5SNV9-2|C1orf167;nc|nan|Q5SNV9-3|C1orf167	ENSG00000215910|ENST00000688073|C1orf167	ENSG00000215910|ENST00000688073|C1orf167	MULTI-SECPEP	A375_MHC_IP_R1	1	477.6560363769531	2	478.282192	954.549831	-0.30781	-0.00014722	-0.38336	-0.00018335	-0.69116	-0.00033057	478.2822836810828	43.298	0.40736	43.298	43.095	43.502	0					11	7	2	0	0	0	0.92636	1	15001	15001		3.9444	0	1	987880			61218	9650	44674	45026	59650	59650					0.07073760305854648
VTRPEQLL	8	Unmodified	_VTRPEQLL_					0	0	0		ENSG00000215910|ENST00000688073|C1orf167;nc|nan|Q5SNV9-2|C1orf167;nc|nan|Q5SNV9-3|C1orf167	ENSG00000215910|ENST00000688073|C1orf167	ENSG00000215910|ENST00000688073|C1orf167	MULTI-MATCH	A375_MHC_IP_R2	2		2	478.282192	954.549831	-0.48339	-0.00023119	0.028604	1.3681E-05	-0.45478	-0.00021751	478.2822047059548	42.369	0.30621	43.141	42.962	43.268	0.7724	-0.078764	0.00020756	NaN	3.9444	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1242500			61219	9650	44674	45026							0.07073760305854648
VTRPSEFNY	9	Unmodified	_VTRPSEFNY_					0	0	0		ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	MULTI-MSMS	A375_MHC_IP_R1	1	557.171875	2	556.772188	1111.52982	-0.9314	-0.00051858	-0.023245	-1.2942E-05	-0.95465	-0.00053152	556.7721207215599	41.464	0.66067	41.464	41.013	41.674	0					18	12	2	0	0	0	0.033808	2	14334	14334;14387		71.708	41.071	1	5240500			61220	7115	44675	45027	59651;59652	59651					-0.02148035424761474
VTRPSEFNY	9	Unmodified	_VTRPSEFNY_					0	0	0		ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	MULTI-MSMS	A375_MHC_IP_R2	2	557.1719970703125	2	556.772188	1111.52982	-0.96376	-0.0005366	-0.28108	-0.0001565	-1.2448	-0.00069309	556.7721283983493	40.74	0.71213	41.515	41.285	41.997	0.77451					18	13	2	0	0	0	0.0094735	1	15118	15118		107.1	54.831	1	7682000			61221	7115	44675	45027	59653	59653					-0.02148035424761474
VTRPTGVSF	9	Unmodified	_VTRPTGVSF_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	A375_MHC_IP_R1	1	482.66632080078125	2	482.266542	962.51853	-0.1109	-5.3482E-05	-0.2396	-0.00011555	-0.35049	-0.00016903	482.26642715210534	42.999	0.61115	42.999	42.689	43.3	0					24	11	3	0	0	0	0.030891	1	14921	14921		74.2	15.521	1	5411700			61222	3941	44676	45028	59654	59654					0.03577187271764615
VTRPTGVSF	9	Unmodified	_VTRPTGVSF_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	A375_MHC_IP_R2	2	482.66619873046875	2	482.266542	962.51853	-0.5188	-0.0002502	-0.04231	-2.0405E-05	-0.56112	-0.00027061	482.2664605645689	42.203	0.45998	42.975	42.707	43.167	0.7724					20	8	3	0	0	0	0.14554	1	15683	15683		65.474	21.615	1	5826800			61223	3941	44676	45028	59655	59655					0.03577187271764615
VTRQDYTY	8	Unmodified	_VTRQDYTY_					0	0	0		ENSG00000005059|ENST00000394650|MCUB	ENSG00000005059|ENST00000394650|MCUB	ENSG00000005059|ENST00000394650|MCUB	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1815795898438	2	523.251089	1044.48762	-0.68952	-0.00036079	-0.46098	-0.00024121	-1.1505	-0.000602	523.2510684270601	86.459	0.55833	86.459	86.172	86.73	0					13	10	2	0	0	0	0.91495	1	31664	31664		18.135	6.4947	1	1726000			61224	880	44677	45029	59656	59656					-0.032840108331583906
VTRQFYVFYES	11	Unmodified	_VTRQFYVFYES_					0	0	0		nc|ENSG00000007306|Q14002-2|CEACAM7	nc|ENSG00000007306|Q14002-2|CEACAM7	nc|ENSG00000007306|Q14002-2|CEACAM7	MULTI-MSMS	A375_MHC_IP_R1	1	480.199951171875	3	480.238232	1437.69287	-0.40777	-0.00019583	-0.15711	-7.5452E-05	-0.56488	-0.00027128	480.2381819942564	20.086	0.30268	20.086	19.827	20.129	0					7	5	2	0	0	0	0.7353	1	5052	5052		3.8459	1.0026	1	1948600			61225	14451	44678	45030	59657	59657					-0.008472770935895824
VTRQGALW	8	Unmodified	_VTRQGALW_					0	0	0		ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000265354|ENST00000580018|TIMM23	ENSG00000178440|ENST00000651763|TIMM23B-AGAP6	ENSG00000178440|ENST00000651763|TIMM23B-AGAP6	MULTI-SECPEP	A375_MHC_IP_R1	1	466.1614074707031	2	465.761426	929.5083	-0.11916	-5.5499E-05	0.56076	0.00026118	0.4416	0.00020568	465.7614014362481	45.922	1.0114	45.922	45.534	46.545	0					35	19	3	0	0	0	0.79439	1	16063	16063		43.772	7.6454	1	5145100			61226	8161	44679	45031	59658	59658					0.04072624337175057
VTRSSFLW	8	Unmodified	_VTRSSFLW_					0	0	0		ENST00000372455.4_1_1:43852626-43853250:-|nuORF	ENST00000372455.4_1_1:43852626-43853250:-|nuORF	ENST00000372455.4_1_1:43852626-43853250:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	498.6684875488281	2	498.269084	994.523616	-0.50436	-0.00025131	-0.19577	-9.7544E-05	-0.70013	-0.00034885	498.26895689271055	76.026	0.76099	76.767	76.385	77.146	0.74052					23	14	2	0	0	0	0.76164	1	28843	28843		38.176	7.539	1	7301900			61227	11201	44680	45032	59659	59659					0.026134911343774547
VTRTARKQS	9	Unmodified	_VTRTARKQS_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;ENST00000540453.5_1_12:69080821-69083416:+|nuORF;ENST00000539906.5_2_12:69082787-69085752:+|nuORF;ENST00000535333.5_1_12:69080821-69090662:+|nuORF;ENST00000537598.5_1_12:69080821-69103022:+|nuORF	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-MSMS	A375_MHC_IP_R1	1	524.7077026367188	2	523.806897	1045.59924	-0.6827	-0.0003576	-0.35558	-0.00018626	-1.0383	-0.00054386	524.3078166169993	90.411	1.5194	90.411	89.78	91.299	0					63	29	4	0	0	0	0.64808	1	33291	33291		11.64	0	1	5756000			61228	2998	44681	45033	59660	59660					0.07826468314647173
VTRTARKQS	9	Unmodified	_VTRTARKQS_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;ENST00000540453.5_1_12:69080821-69083416:+|nuORF;ENST00000539906.5_2_12:69082787-69085752:+|nuORF;ENST00000535333.5_1_12:69080821-69090662:+|nuORF;ENST00000537598.5_1_12:69080821-69103022:+|nuORF	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	523.806897	1045.59924	-0.6827	-0.0003576	-0.35558	-0.00018626	-1.0383	-0.00054386	524.3078166169993	90.411	1.5194	90.411	89.78	91.299	0	0.044374	-0.00030578	NaN	11.64	63	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5756000			61229	2998	44681	45033							0.07826468314647173
VTRTARKQS	9	Unmodified	_VTRTARKQS_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;ENST00000540453.5_1_12:69080821-69083416:+|nuORF;ENST00000539906.5_2_12:69082787-69085752:+|nuORF;ENST00000535333.5_1_12:69080821-69090662:+|nuORF;ENST00000537598.5_1_12:69080821-69103022:+|nuORF	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-MATCH	A375_MHC_IP_R2	2		2	523.806897	1045.59924	-0.44323	-0.00023217	0.10888	5.7029E-05	-0.33436	-0.00017514	524.3077839577674	89.591	1.1155	90.322	89.635	90.751	0.7318	-0.044374	0.00018079	NaN	11.64	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4349300			61230	2998	44681	45033							0.07826468314647173
VTRTLRLV	8	Unmodified	_VTRTLRLV_					0	0	0			REV__ENSG00000132205|ENST00000254528|EMILIN2	REV__ENSG00000132205|ENST00000254528|EMILIN2	MULTI-SECPEP	A375_MHC_IP_R2	2	479.7135925292969	2	479.313826	956.613099	-0.53984	-0.00025875	0.099277	4.7585E-05	-0.44056	-0.00021117	479.31379756096663	48.448	0.55557	49.205	48.929	49.485	0.75737					25	10	3	0	0	0	0.8957	1	18160	18160		28.487	6.7402	1	13804000	+		61231	18641	44682	45034	59661	59661					0.13305745813750036
VTRVPGRD	8	Unmodified	_VTRVPGRD_					0	0	0			REV__ENSG00000041880|ENST00000398755|PARP3	REV__ENSG00000041880|ENST00000398755|PARP3	MULTI-MSMS	A375_MHC_IP_R1	1	450.6564636230469	2	450.256508	898.498464	0.061712	2.7786E-05	-0.14117	-6.3561E-05	-0.079454	-3.5775E-05	450.25637859553416	111.68	2.2427	111.68	110.8	113.04	0					91	43	3	0	0	0	0.77741	1	41076	41076		4.3292	0	1	10089000	+		61232	16344	44683	45035	59662	59662					0.045154363318033575
VTRVPGRD	8	Unmodified	_VTRVPGRD_					0	0	0			REV__ENSG00000041880|ENST00000398755|PARP3	REV__ENSG00000041880|ENST00000398755|PARP3	MULTI-MSMS	A375_MHC_IP_R2	2	450.6565856933594	2	450.256508	898.498464	-0.21222	-9.5555E-05	0.44037	0.00019828	0.22814	0.00010272	450.2564871055537	108.75	2.7534	109.5	108.4	111.15	0.74684					164	53	5	0	0	0	0.77797	1	40854	40854		2.3027	0	1	13518000	+		61233	16344	44683	45035	59663	59663					0.045154363318033575
VTRVPGRD	8	Unmodified	_VTRVPGRD_					0	0	0			REV__ENSG00000041880|ENST00000398755|PARP3	REV__ENSG00000041880|ENST00000398755|PARP3	MULTI-MSMS	A375_MHC_IP_R2	2	450.65643310546875	2	450.256508	898.498464	-0.11274	-5.0762E-05	0.034372	1.5476E-05	-0.078367	-3.5285E-05	450.25644073000825	111.15	2.2466	111.89	111.09	113.34	0.73691					92	43	3	0	0	0	0.77752	2	42064	41659;42064		3.9444	0	1	12013000	+		61234	16344	44683	45035	59664;59665	59665					0.045154363318033575
VTRVRAHILK	10	Unmodified	_VTRVRAHILK_					0	0	0			REV__ENST00000492578.1_1_22:50720234-50720417:-|nuORF	REV__ENST00000492578.1_1_22:50720234-50720417:-|nuORF	MSMS	A375_MHC_IP_R2	2	596.8082885742188	2	596.885481	1191.75641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100	1	100.77	100.27	101.27	0.76278								0	0	0	0.1552	1	37927	37927		3.9444	0	1		+		61235	25412	44684	45036	59666	59666					0.16820172924826693
VTRVRPGQ	8	Unmodified	_VTRVRPGQ_					0	0	0		ENSG00000182272|ENST00000329962|B4GALNT4	ENSG00000182272|ENST00000329962|B4GALNT4	ENSG00000182272|ENST00000329962|B4GALNT4	MULTI-MSMS	A375_MHC_IP_R2	2	457.172607421875	2	456.772326	911.530098	-0.22572	-0.0001031	0.43097	0.00019685	0.20525	9.375E-05	456.7724304396978	126.26	1.6199	126.56	126.23	127.85	0.2951					73	31	5	0	0	0	0.77797	1	49628	49628		2.3027	0	1	145630000			61236	8397	44685	45037	59667	59667					0.07079429085752054
VTRWRFKA	8	Unmodified	_VTRWRFKA_					0	0	0		ENST00000430644.5_1_4:728709-759864:+|nuORF	ENST00000430644.5_1_4:728709-759864:+|nuORF	ENST00000430644.5_1_4:728709-759864:+|nuORF	MSMS	A375_MHC_IP_R2	2	355.5747375488281	3	355.210171	1062.60868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.53	1	137.61	137.11	138.11	0.083969								0	0	0	0.16876	1	53973	53973		1.6526	0	1				61237	11859	44686	45038	59668	59668					0.07988281390839802
VTSDDFCFF	9	Unmodified	_VTSDDFCFF_					0	0	0		nc|ENSG00000141098|Q3B7J2-2|GFOD2;ENST00000602522.1_1_16:67709060-67709966:-|nuORF;ENSG00000141098|ENST00000268797|GFOD2	nc|ENSG00000141098|Q3B7J2-2|GFOD2	nc|ENSG00000141098|Q3B7J2-2|GFOD2	MSMS	A375_MHC_IP_R2	2	540.7078247070312	2	540.720775	1079.427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.753	1	96.504	96.004	97.004	0.75045								0	0	0	0.15486	1	36368	36368		12.532	0	1				61238	5216	44687	45039	59669	59669					-0.10953864207749575
VTSETDTRY	9	Unmodified	_VTSETDTRY_					0	0	0		ENSG00000142208|ENST00000649815|AKT1;nc|ENSG00000142208|P31749-2|AKT1;ENST00000554585.5_1_14:105236680-105238139:-|nuORF;ENST00000557552.1_1_14:105236680-105237484:-|nuORF;nc|ENSG00000117020|Q9Y243-2|AKT3;ENSG00000117020|ENST00000673466|AKT3	ENSG00000142208|ENST00000649815|AKT1;nc|ENSG00000117020|Q9Y243-2|AKT3	ENSG00000142208|ENST00000649815|AKT1	MULTI-SECPEP	A375_MHC_IP_R2	2	535.8021240234375	2	536.251286	1070.48802	-0.70381	-0.00037742	0.097607	5.2342E-05	-0.6062	-0.00032508	536.2509697860582	100.79	0.46233	101.56	101.29	101.75	0.76278					15	8	2	0	0	0	0.75466	1	38272	38272		4.3292	0.38484	1	721280			61239	5296;3452	44688	45040	59670	59670					-0.04440635903961265
VTSETDTRY	9	Unmodified	_VTSETDTRY_					0	0	0		ENSG00000142208|ENST00000649815|AKT1;nc|ENSG00000142208|P31749-2|AKT1;ENST00000554585.5_1_14:105236680-105238139:-|nuORF;ENST00000557552.1_1_14:105236680-105237484:-|nuORF;nc|ENSG00000117020|Q9Y243-2|AKT3;ENSG00000117020|ENST00000673466|AKT3	ENSG00000142208|ENST00000649815|AKT1;nc|ENSG00000117020|Q9Y243-2|AKT3	ENSG00000142208|ENST00000649815|AKT1	MULTI-MATCH	A375_MHC_IP_R1	1		2	536.251286	1070.48802	-0.64901	-0.00034803	-0.8427	-0.0004519	-1.4917	-0.00079993	536.2509849449602	101.51	0.45539	101.51	101.19	101.65	0	-0.022628	-0.00026865	NaN	4.3292	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	666110			61240	5296;3452	44688	45040							-0.04440635903961265
VTSFCMFKY	9	Unmodified	_VTSFCMFKY_					0	0	0		ENSG00000127249|ENST00000342695|ATP13A4	ENSG00000127249|ENST00000342695|ATP13A4	ENSG00000127249|ENST00000342695|ATP13A4	MSMS	A375_MHC_IP_R1	1	563.2046508789062	2	563.259013	1124.50347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.596	1	62.596	62.096	63.096	0								0	0	0	0.14905	1	22610	22610		23.148	5.0134	1				61241	4081	44689	45041	59671	59671					-0.05379763912105773
VTSFDYEQ	8	Unmodified	_VTSFDYEQ_					0	0	0			REV__nc|ENSG00000128159|Q96RT7-2|TUBGCP6	REV__nc|ENSG00000128159|Q96RT7-2|TUBGCP6	MULTI-SECPEP	A375_MHC_IP_R2	2	495.11767578125	2	494.716547	987.418542	-0.36921	-0.00018265	0.64395	0.00031857	0.27474	0.00013592	494.71745931338097	98.821	0.91338	99.581	99.201	100.11	0.75977					46	17	3	0	0	0	0.73227	1	37437	37437		37.974	1.9298	1	18067000	+		61242	18443	44690	45042	59672	59672					-0.07567094852709033
VTSFHVSAV	9	Unmodified	_VTSFHVSAV_					0	0	0		ENST00000471223.1_1_1:3548577-3548739:-|nuORF	ENST00000471223.1_1_1:3548577-3548739:-|nuORF	ENST00000471223.1_1_1:3548577-3548739:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	473.6242980957031	2	473.753267	945.491981	-0.38594	-0.00018284	0.14249	6.7506E-05	-0.24344	-0.00011533	473.75312151497627	85.65	1.3746	86.386	85.677	87.052	0.73601					42	26	3	0	0	0	0.17328	1	32644	32644		39.957	0	1	8131800			61243	12350	44691	45043	59673	59673					0.01705498380431436
VTSFYLEQ	8	Unmodified	_VTSFYLEQ_					0	0	0			REV__ENSG00000072840|ENST00000264956|EVC	REV__ENSG00000072840|ENST00000264956|EVC	MULTI-MSMS	A375_MHC_IP_R1	1	494.1455078125	2	493.745108	985.475663	-0.10196	-5.0345E-05	-0.34783	-0.00017174	-0.4498	-0.00022209	493.74507285162395	107.97	0.6599	107.97	107.7	108.36	0					24	12	3	0	0	0	0.57209	1	39620	39620		46.021	3.9264	1	2310000	+		61244	16613	44692	45044	59674	59674					-0.017656275763329177
VTSGKIIEY	9	Unmodified	_VTSGKIIEY_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	MULTI-SECPEP	A375_MHC_IP_R2	2	504.6569519042969	2	505.281857	1008.54916	-0.88326	-0.00044629	0.35004	0.00017687	-0.53322	-0.00026943	505.2819760013067	40.746	0.71171	41.52	41.082	41.794	0.77451					35	13	3	0	0	0	0.36673	1	15061	15061		38.615	7.9782	1	29580000			61245	7719	44693	45045	59675	59675					0.045229208661339726
VTSGLNTSVVF	11	Unmodified	_VTSGLNTSVVF_					0	0	0		ENSG00000102003|ENST00000263233|SYP;nc|ENSG00000102003|P08247-2|SYP	ENSG00000102003|ENST00000263233|SYP	ENSG00000102003|ENST00000263233|SYP	MULTI-MSMS	A375_MHC_IP_R1	1	376.2659606933594	3	375.20464	1122.59209	0.23728	8.9027E-05	0.37011	0.00013887	0.60739	0.00022789	375.2048449889603	28.82	0.96277	28.82	28.44	29.403	0					50	18	5	0	0	0	0.63737	1	8863	8863		12.228	0	1	154330000			61246	2347	44694	45046	59676	59676					0.035696909235639396
VTSHPLHPG	9	Unmodified	_VTSHPLHPG_					0	0	0			REV__nc|ENSG00000189056|P78509-3|RELN	REV__nc|ENSG00000189056|P78509-3|RELN	MULTI-SECPEP	A375_MHC_IP_R2	2	472.1322021484375	2	472.751059	943.487565	-0.69158	-0.00032694	0.00062498	2.9546E-07	-0.69095	-0.00032665	472.75103024672325	44.933	0.51058	45.702	45.441	45.951	0.7691					20	9	3	0	0	0	0.62767	1	16802	16802		7.2892	0	1	3998000	+		61247	22136	44695	45047	59677	59677					0.01356033957517866
VTSINEDNIY	10	Unmodified	_VTSINEDNIY_					0	0	0		nc|ENSG00000169551|Q8WUE5-2|CT55;ENSG00000169551|ENST00000276241|CT55	nc|ENSG00000169551|Q8WUE5-2|CT55	nc|ENSG00000169551|Q8WUE5-2|CT55	MULTI-MSMS	A375_MHC_IP_R1	1	584.34912109375	2	584.280043	1166.54553	0.063007	3.6814E-05	0.87297	0.00051006	0.93597	0.00054687	584.2808664253391	44.499	0.76736	44.499	44.01	44.777	0					38	14	4	0	0	0	0.69833	1	15409	15409		13.042	0	1	7192900			61248	7412	44696	45048	59678	59678					-0.03107793698382011
VTSLDLNFK	9	Unmodified	_VTSLDLNFK_					0	0	0			REV__ENST00000455617.1_1_22:17898646-17898763:+|nuORF	REV__ENST00000455617.1_1_22:17898646-17898763:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	518.7394409179688	2	518.787307	1035.56006	-0.65407	-0.00033932	-0.19363	-0.00010045	-0.84769	-0.00043977	518.7870422581954	79.944	1.3173	80.689	79.744	81.062	0.74473					13	7	2	0	0	0	0.68705	1	30257	30257		8.1555	1.4324	1	4506900	+		61249	20708	44697	45049	59679	59679					0.04370323240414109
VTSLTLASL	9	Unmodified	_VTSLTLASL_					0	0	0			REV__nc|ENSG00000110076|Q9P2S2-2|NRXN2;REV__ENST00000466324.1_1_11:64444212-64481216:-|nuORF	REV__nc|ENSG00000110076|Q9P2S2-2|NRXN2	MULTI-SECPEP	A375_MHC_IP_R2	2	453.1711730957031	2	452.771126	903.527698	-0.14748	-6.6772E-05	-0.25008	-0.00011323	-0.39755	-0.00018	452.77094727790836	90.734	0.9621	91.468	91.16	92.122	0.73451					40	18	3	0	0	0	0.040439	1	34531	34531		92.822	0	1	3089000	+		61250	17615;25035	44698	45050	59680	59680					0.07207535837426349
VTSLTVLVSY	10	Unmodified	_VTSLTVLVSY_					0	0	0		ENSG00000196119|ENST00000284287|OR8A1;nc|ENSG00000196119|Q8NGG7|OR8A1	ENSG00000196119|ENST00000284287|OR8A1	ENSG00000196119|ENST00000284287|OR8A1	MULTI-SECPEP	A375_MHC_IP_R1	1	541.6797485351562	2	541.310615	1080.60668	-0.53993	-0.00029227	1.1022	0.00059665	0.5623	0.00030438	541.3110262366757	56.883	0.40861	56.883	56.65	57.059	0					15	7	3	0	0	0	0.72086	1	20427	20427		24.021	3.5669	1	3436700			61251	8999	44699	45051	59681	59681					0.06959763071699854
VTSNAALTLR	10	Unmodified	_VTSNAALTLR_					0	0	0		ENSG00000154734|ENST00000284984|ADAMTS1	ENSG00000154734|ENST00000284984|ADAMTS1	ENSG00000154734|ENST00000284984|ADAMTS1	MULTI-MSMS	A375_MHC_IP_R1	1	1045.9993896484375	1	1045.60003	1044.59276	-0.20261	-0.00021185	-0.05442	-5.6902E-05	-0.25703	-0.00026876	1045.5997610958616	149.34	1.5487	149.34	148.45	150	0					96	53	2	0	0	0	0.72747	1	57030	57030		0	0	1	269180			61252	6103	44700	45052	59682	59682					0.07224530363259873
VTSNAALTLR	10	Unmodified	_VTSNAALTLR_					0	0	0		ENSG00000154734|ENST00000284984|ADAMTS1	ENSG00000154734|ENST00000284984|ADAMTS1	ENSG00000154734|ENST00000284984|ADAMTS1	MULTI-MSMS	A375_MHC_IP_R2	2	1045.9993896484375	1	1045.60003	1044.59276	0.24269	0.00025375	-0.48626	-0.00050844	-0.24358	-0.00025468	1045.5993436511008	149.41	1.5337	149.42	148.48	150.01	0.01825					102	58	2	0	0	0	0.72747	1	58018	58018		0	0	1	169880			61253	6103	44700	45052	59683	59683					0.07224530363259873
VTSPAIRAL	9	Unmodified	_VTSPAIRAL_					0	0	0		ENST00000336596.6_1_3:89156771-89156981:+|nuORF	ENST00000336596.6_1_3:89156771-89156981:+|nuORF	ENST00000336596.6_1_3:89156771-89156981:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	464.6320495605469	2	464.284734	926.554916	0.25848	0.00012001	-0.66734	-0.00030983	-0.40886	-0.00018983	464.28443524571094	49.209	0.50639	49.209	49.033	49.54	0					17	9	3	0	0	0	0.35487	1	17438	17438		36.127	10.728	1	2668500			61254	10817	44701	45053	59684	59684					0.08870064168456793
VTSPAIRAL	9	Unmodified	_VTSPAIRAL_					0	0	0		ENST00000336596.6_1_3:89156771-89156981:+|nuORF	ENST00000336596.6_1_3:89156771-89156981:+|nuORF	ENST00000336596.6_1_3:89156771-89156981:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	464.6846923828125	2	464.284734	926.554916	-0.56879	-0.00026408	0.27556	0.00012794	-0.29322	-0.00013614	464.2848676087374	48.359	0.76054	49.116	48.879	49.639	0.75737					21	14	3	0	0	0	0.49205	1	18168	18168		34.402	3.7652	1	2160800			61255	10817	44701	45053	59685	59685					0.08870064168456793
VTSPIRASY	9	Unmodified	_VTSPIRASY_					0	0	0		ENSG00000037749|ENST00000522782|MFAP3	ENSG00000037749|ENST00000522782|MFAP3	ENSG00000037749|ENST00000522782|MFAP3	MULTI-SECPEP	A375_MHC_IP_R1	1	497.67169189453125	2	497.271824	992.529095	-0.1762	-8.7618E-05	-0.24228	-0.00012048	-0.41847	-0.0002081	497.2716680222165	39.209	0.6086	39.209	38.882	39.491	0					36	11	4	0	0	0	0.16237	1	13319	13319		55.235	17.059	1	36046000			61256	1148	44702	45054	59686	59686					0.03253169926188093
VTSQAFSLF	9	Unmodified	_VTSQAFSLF_					0	0	0			REV__ENST00000498357.1_1_6:31937884-31938043:-|nuORF	REV__ENST00000498357.1_1_6:31937884-31938043:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	500.6612854003906	2	500.260925	998.507297	-1.1401	-0.00057033	0.69666	0.00034851	-0.44342	-0.00022182	500.2612881228598	53.404	0.46019	54.156	53.893	54.353	0.75105					15	8	2	0	0	0	0.3607	1	20157	20157		34.102	0	1	2362100	+		61257	22507	44703	45055	59687	59687					0.007983651776271472
VTSQPPTT	8	Unmodified	_VTSQPPTT_					0	0	0		nc|ENSG00000111261|Q9H8J5-2|MANSC1;ENSG00000111261|ENST00000535902|MANSC1	nc|ENSG00000111261|Q9H8J5-2|MANSC1	nc|ENSG00000111261|Q9H8J5-2|MANSC1	MSMS	A375_MHC_IP_R1	1	415.6095275878906	2	415.71635	829.418148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.47	1	145.47	144.97	145.97	0								0	0	0	0.16876	1	55753	55753		2.3027	0	1				61258	2977	44704	45056	59688	59688					-0.00338469781911499
VTSRHIWDRLQ	11	Unmodified	_VTSRHIWDRLQ_					0	0	0		tr|U7SVA9|U7SVA9_FUSNULargeribosomalsubunitassemblyfactorBipAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bipAPE=3SV=1	tr|U7SVA9|U7SVA9_FUSNULargeribosomalsubunitassemblyfactorBipAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bipAPE=3SV=1	tr|U7SVA9|U7SVA9_FUSNULargeribosomalsubunitassemblyfactorBipAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bipAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	471.6922912597656	3	470.92487	1409.75278	-0.47112	-0.00022186	-4.4005	-0.0020723	-4.8716	-0.0022942	471.2577858952365	76.968	0.66267	76.968	76.572	77.235	0					14	12	2	0	0	0	0.99856	1	28015	28015		1.7824	0	1	3432700			61259	29791	44705	45057	59689	59689					0.06429458360298668
VTSRKKKIK	9	Unmodified	_VTSRKKKIK_					0	0	0			REV__nc|ENSG00000109689|Q9P246-3|STIM2	REV__nc|ENSG00000109689|Q9P246-3|STIM2	MULTI-SECPEP	A375_MHC_IP_R1	1	544.7687377929688	2	544.369133	1086.72371	-0.91784	-0.00049964	-0.19109	-0.00010402	-1.1089	-0.00060367	544.3692719118725	147.59	0.24496	147.59	147.51	147.75	0					43	22	3	0	0	0	0.81896	1	56398	56398		0	0	1	203680	+		61260	17592	44706	45058	59690	59690					0.1838196580197291
VTSRKKKIK	9	Unmodified	_VTSRKKKIK_					0	0	0			REV__nc|ENSG00000109689|Q9P246-3|STIM2	REV__nc|ENSG00000109689|Q9P246-3|STIM2	MULTI-MSMS	A375_MHC_IP_R2	2	544.7688598632812	2	544.369133	1086.72371	-0.62035	-0.0003377	-0.089783	-4.8875E-05	-0.71013	-0.00038657	544.3690061702393	147.63	0.21242	147.65	147.56	147.77	0.019913					34	17	3	0	0	0	0.77827	1	57384	57384		0	0	1	173750	+		61261	17592	44706	45058	59691	59691					0.1838196580197291
VTSRKKKIK	9	Unmodified	_VTSRKKKIK_					0	0	0			REV__nc|ENSG00000109689|Q9P246-3|STIM2	REV__nc|ENSG00000109689|Q9P246-3|STIM2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	544.369133	1086.72371	-0.62035	-0.0003377	-0.089783	-4.8875E-05	-0.71013	-0.00038657	544.3690061702393	147.63	0.21242	147.65	147.56	147.77	0.019913	0.026439	4.9348E-05	NaN	0	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173750	+		61262	17592	44706	45058							0.1838196580197291
VTSSNPLKLL	10	Unmodified	_VTSSNPLKLL_					0	0	0			REV__PCDH18|p.P61S|1|0.3|ENSG00000189184|chr4:137531908-137531908|G/A|missense_variant	REV__PCDH18|p.P61S|1|0.3|ENSG00000189184|chr4:137531908-137531908|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	535.6973266601562	2	536.324057	1070.63356	-0.72306	-0.0003878	0.81755	0.00043847	0.094482	5.0673E-05	536.3241783283275	60.606	0.25489	60.606	60.414	60.669	0					6	4	2	0	0	0	0.85226	1	21764	21764		10.074	4.3135	1	701010	+		61263	27725	44707	45059	59692	59692					0.10106871682887686
VTSSVIISV	9	Unmodified	_VTSSVIISV_					0	0	0		ENST00000567481.1_2_16:75182955-75200774:+|nuORF	ENST00000567481.1_2_16:75182955-75200774:+|nuORF	ENST00000567481.1_2_16:75182955-75200774:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	904.4991455078125	1	904.534975	903.527698	-0.11539	-0.00010438	0.039422	3.5658E-05	-0.07597	-6.8717E-05	904.5349373647867	100.86	0.86144	100.86	100.53	101.39	0					40	16	4	0	0	0	0.25276	1	37211	37211		34.102	0	1	23645000			61264	13572	44708	45060	59693	59693					0.07207535837437717
VTSSVIISV	9	Unmodified	_VTSSVIISV_					0	0	0		ENST00000567481.1_2_16:75182955-75200774:+|nuORF	ENST00000567481.1_2_16:75182955-75200774:+|nuORF	ENST00000567481.1_2_16:75182955-75200774:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	904.534975	903.527698	-0.16945	-0.00015327	0.054198	4.9024E-05	-0.11525	-0.00010425	904.5349090307534	100.03	0.7625	100.79	100.42	101.19	0.76278	-0.037489	7.2516E-06	NaN	34.102	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19449000			61265	13572	44708	45060							0.07207535837437717
VTSSYRQKL	9	Unmodified	_VTSSYRQKL_					0	0	0		ENSG00000113971|ENST00000337331|NPHP3;ENST00000474871.5_1_3:132405102-132413706:-|nuORF;nc|ENSG00000113971|Q7Z494-2|NPHP3;ENST00000471702.2_2_3:132363653-132416205:-|nuORF	ENSG00000113971|ENST00000337331|NPHP3	ENSG00000113971|ENST00000337331|NPHP3	MULTI-SECPEP	A375_MHC_IP_R1	1	361.62042236328125	3	361.204862	1080.59276	-0.17418	-6.2913E-05	-0.81463	-0.00029425	-0.9888	-0.00035716	361.2046267730897	26.226	0.55815	26.226	26.068	26.626	0					13	10	2	0	0	0	0.55359	1	7719	7719		7.1017	2.5729	1	1889900			61266	3189	44709	45061	59694	59694					0.05568530363279933
VTSYSYKELTT	11	Unmodified	_VTSYSYKELTT_					0	0	0			REV__SLC39A12|p.G368S|2|0.27|ENSG00000148482|chr10:17987484-17987484|G/A|missense_variant	REV__SLC39A12|p.G368S|2|0.27|ENSG00000148482|chr10:17987484-17987484|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	430.9507141113281	3	431.218726	1290.63435	-0.34702	-0.00014964	1.7774	0.00076644	1.4304	0.00061679	431.21954328330406	28.053	0.25461	28.731	28.553	28.808	0.67857					6	4	2	0	0	0	0.99482	1	9639	9639		3.8459	0	1	1549900	+		61267	27995	44710	45062	59695	59695					0.0006562154128459952
VTTADPENF	9	Unmodified	_VTTADPENF_					0	0	0		PCDHGA1|p.V356D|1|0.42|ENSG00000204956|chr5:141331751-141331751|T/A|missense_variant	PCDHGA1|p.V356D|1|0.42|ENSG00000204956|chr5:141331751-141331751|T/A|missense_variant	PCDHGA1|p.V356D|1|0.42|ENSG00000204956|chr5:141331751-141331751|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	496.6686096191406	2	497.229822	992.445091	-0.43981	-0.00021869	0.55707	0.00027699	0.11726	5.8307E-05	497.2299030622213	40.163	0.40752	40.163	39.999	40.406	0					11	7	2	0	0	0	0.62767	1	13817	13817		11.64	0	1	1757200			61268	15137	44711	45063	59696	59696					-0.05143405961382541
VTTADPENF	9	Unmodified	_VTTADPENF_					0	0	0		PCDHGA1|p.V356D|1|0.42|ENSG00000204956|chr5:141331751-141331751|T/A|missense_variant	PCDHGA1|p.V356D|1|0.42|ENSG00000204956|chr5:141331751-141331751|T/A|missense_variant	PCDHGA1|p.V356D|1|0.42|ENSG00000204956|chr5:141331751-141331751|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	496.6686706542969	2	497.229822	992.445091	-0.53478	-0.00026591	0.021069	1.0476E-05	-0.51371	-0.00025543	497.2299032603451	39.487	0.5589	40.261	40.067	40.626	0.77451					18	10	2	0	0	0	0.62767	1	14558	14558		11.64	3.047	1	1966500			61269	15137	44711	45063	59697	59697					-0.05143405961382541
VTTAKKKFL	9	Unmodified	_VTTAKKKFL_					0	0	0		ENST00000547063.5_1_12:112568363-112572820:+|nuORF	ENST00000547063.5_1_12:112568363-112572820:+|nuORF	ENST00000547063.5_1_12:112568363-112572820:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	518.1842041015625	2	518.331685	1034.64882	-0.3571	-0.00018509	-0.34638	-0.00017954	-0.70348	-0.00036464	518.3315907419252	71.407	0.25342	71.407	71.262	71.516	0					8	4	2	0	0	0	0.65246	1	25968	25968		15.847	3.6065	1	2041100			61270	13338	44712	45064	59698	59698					0.1328778327076634
VTTAYSSVTY	10	Unmodified	_VTTAYSSVTY_					0	0	0		ENST00000265734.8_1_7:92241582-92241702:-|nuORF	ENST00000265734.8_1_7:92241582-92241702:-|nuORF	ENST00000265734.8_1_7:92241582-92241702:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	546.6658935546875	2	546.266404	1090.51826	-0.35056	-0.0001915	0.1466	8.0082E-05	-0.20396	-0.00011142	546.2664736496415	54.222	0.75879	54.222	53.758	54.516	0					25	14	2	0	0	0	0.45919	1	19281	19281		30.637	3.7529	1	6525600			61271	10348	44713	45065	59699	59699					-0.023382772387549267
VTTDFQKIF	9	Unmodified	_VTTDFQKIF_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-SECPEP	A375_MHC_IP_R2	2	549.6082763671875	2	549.795132	1097.57571	-0.77201	-0.00042445	-3.6186	-0.0019895	-4.3906	-0.0024139	550.2933404938957	83.017	0.40329	83.756	83.544	83.947	0.73962					12	7	2	0	0	0	0.65527	1	31534	31534		17.113	7.7655	1	1622600			61272	10032	44714	45066	59700	59700					0.03082609757461796
VTTDIQVKV	9	Unmodified	_VTTDIQVKV_					0	0	0		SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	502.1947021484375	2	501.795132	1001.57571	-0.78128	-0.00039204	0.46302	0.00023234	-0.31826	-0.0001597	501.79525769927693	50.378	0.81106	51.132	50.804	51.615	0.75406					38	15	4	0	0	0	0.090157	1	18910	18910		76.825	16.751	1	8228500			61273	9018	44715	45067	59701	59701					0.07498609757465147
VTTDVSYLL	9	Unmodified	_VTTDVSYLL_					0	0	0		ENST00000574439.5_1_15:74472423-74490170:-|nuORF;nc|ENSG00000137868|Q9BX79-3|STRA6;ENSG00000137868|ENST00000395105|STRA6;nc|ENSG00000137868|Q9BX79-6|STRA6;nc|ENSG00000137868|Q9BX79-5|STRA6;nc|ENSG00000137868|Q9BX79-4|STRA6;chr15:74202282-74202418|298|15.96|0.4|5.33|-|ENST00000563965|STRA6,STRA6;ENST00000569936.5_1_15:74476032-74483282:-|nuORF	ENST00000574439.5_1_15:74472423-74490170:-|nuORF	ENST00000574439.5_1_15:74472423-74490170:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1010.9412841796875	1	1010.54045	1009.53318	0.40864	0.00041295	0.20339	0.00020553	0.61203	0.00061848	1010.5406118419986	106.96	0.46081	106.96	106.73	107.19	0					12	8	2	0	0	0	0.1277	1	39294	39294		54.774	0	1	2265600			61274	439	44716	45068	59702	59702					0.02879214629240323
VTTDVSYLL	9	Unmodified	_VTTDVSYLL_					0	0	0		ENST00000574439.5_1_15:74472423-74490170:-|nuORF;nc|ENSG00000137868|Q9BX79-3|STRA6;ENSG00000137868|ENST00000395105|STRA6;nc|ENSG00000137868|Q9BX79-6|STRA6;nc|ENSG00000137868|Q9BX79-5|STRA6;nc|ENSG00000137868|Q9BX79-4|STRA6;chr15:74202282-74202418|298|15.96|0.4|5.33|-|ENST00000563965|STRA6,STRA6;ENST00000569936.5_1_15:74476032-74483282:-|nuORF	ENST00000574439.5_1_15:74472423-74490170:-|nuORF	ENST00000574439.5_1_15:74472423-74490170:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1010.9407958984375	1	1010.54045	1009.53318	-0.00493	-4.982E-06	-0.69665	-0.000704	-0.70158	-0.00070898	1010.5399894234288	106.23	0.45881	106.99	106.68	107.14	0.75977					11	8	2	0	0	0	0.24479	1	40187	40187		50.855	0	1	2228700			61275	439	44716	45068	59703	59703					0.02879214629240323
VTTEPENR	8	Unmodified	_VTTEPENR_					0	0	0		ENSG00000204619|ENST00000376772|PPP1R11	ENSG00000204619|ENST00000376772|PPP1R11	ENSG00000204619|ENST00000376772|PPP1R11	MSMS	A375_MHC_IP_R2	2	473.50665283203125	2	473.235439	944.456324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.748	1	79.493	78.993	79.993	0.74474								0	0	0	0.16876	1	29892	29892		9.3474	0	1				61276	9468	44717	45069	59704	59704					-0.018125838672403916
VTTFKVNKF	9	Unmodified	_VTTFKVNKF_					0	0	0			REV__tr|U7SN73|U7SN73_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01691PE=4SV=1	REV__tr|U7SN73|U7SN73_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01691PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	362.2780456542969	3	361.878087	1082.61243	0.48404	0.00017516	0.94559	0.00034219	1.4296	0.00051735	361.87786527323914	49.562	0.76352	49.562	49.235	49.998	0					32	14	3	0	0	0	0.46038	1	17591	17591		15.248	3.7306	1	3595200	+		61277	28312	44718	45070	59705	59705					0.07442906374035374
VTTGVMGA	8	Unmodified	_VTTGVMGA_					0	0	0		ENSG00000167676|ENST00000301286|PLIN4	ENSG00000167676|ENST00000301286|PLIN4	ENSG00000167676|ENST00000301286|PLIN4	MULTI-MSMS	A375_MHC_IP_R2	2	734.949462890625	1	735.370552	734.363275	-0.66739	-0.00049078	1.6745	0.0012314	1.0071	0.00074057	735.3754329006368	85.375	0.15434	86.111	86.034	86.188	0.73601					4	2	2	0	0	0	0.77702	1	32465	32465		5.7604	0	1	535940			61278	7210	44719	45071	59706	59706					-0.014531798541725038
VTTIARNW	8	Unmodified	_VTTIARNW_					0	0	0		ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A;SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant;ENSG00000101310|ENST00000650089|SEC23B	ENSG00000100934|ENST00000307712|SEC23A;SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	481.16680908203125	2	480.766709	959.518865	-0.41973	-0.00020179	0.27457	0.00013201	-0.14515	-6.9785E-05	480.76681503013964	43.881	0.45826	43.881	43.655	44.113	0					16	8	4	0	0	0	0.16582	1	15302	15302		78.149	14.587	1	3218700			61279	2280;2234	44720	45072	59707	59707					0.03748606991609904
VTTIARNW	8	Unmodified	_VTTIARNW_					0	0	0		ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A;SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant;ENSG00000101310|ENST00000650089|SEC23B	ENSG00000100934|ENST00000307712|SEC23A;SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	SEC23B|p.F702Sfs*23|1|0.13|ENSG00000101310|chr20:18554345-18554345|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	481.16607666015625	2	480.766709	959.518865	-0.47071	-0.0002263	-0.066313	-3.1881E-05	-0.53702	-0.00025818	480.76651858031755	43.04	0.40395	43.812	43.573	43.977	0.7724					11	7	2	0	0	0	0.42086	1	16054	16054		52.268	5.3475	1	2395900			61280	2280;2234	44720	45072	59708	59708					0.03748606991609904
VTTIRNFRLY	10	Unmodified	_VTTIRNFRLY_					0	0	0			REV__ENSG00000108061|ENST00000369452|SHOC2	REV__ENSG00000108061|ENST00000369452|SHOC2	MULTI-SECPEP	A375_MHC_IP_R2	2	427.6103210449219	3	428.247062	1281.71936	-0.69555	-0.00029787	0.48771	0.00020886	-0.20784	-8.9008E-05	428.24730389758327	33.9	0.40417	34.652	34.399	34.803	0.75225					11	7	2	0	0	0	0.94651	1	12074	12074		1.7423	1.7423	1	1554900	+		61281	17512	44721	45073	59709	59709					0.08976456588425208
VTTKAALTY	9	Unmodified	_VTTKAALTY_					0	0	0		M1AP|p.R133K|1|0.26|ENSG00000159374|chr2:74614992-74614992|C/T|missense_variant	M1AP|p.R133K|1|0.26|ENSG00000159374|chr2:74614992-74614992|C/T|missense_variant	M1AP|p.R133K|1|0.26|ENSG00000159374|chr2:74614992-74614992|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	484.67620849609375	2	484.276575	966.538597	-0.23107	-0.0001119	-0.154	-7.4578E-05	-0.38507	-0.00018648	484.2764919664527	36.059	0.50897	36.059	35.778	36.287	0					22	9	3	0	0	0	0.11436	1	12002	12002		58.679	0	1	11310000			61282	14336	44722	45074	59710	59710					0.053989382117038076
VTTLLVNGSP	10	Unmodified	_VTTLLVNGSP_					0	0	0		tr|U7T5H7|U7T5H7_FUSNULargeribosomalsubunitproteinbL28OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpmBPE=3SV=1	tr|U7T5H7|U7T5H7_FUSNULargeribosomalsubunitproteinbL28OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpmBPE=3SV=1	tr|U7T5H7|U7T5H7_FUSNULargeribosomalsubunitproteinbL28OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpmBPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	501.2234802246094	2	500.787307	999.560061	-0.34915	-0.00017485	0.27269	0.00013656	-0.076466	-3.8293E-05	500.78737191207097	54.745	0.65939	54.745	54.467	55.126	0					19	12	2	0	0	0	0.22459	1	19477	19477		66.457	22.598	1	8900200			61283	30022	44723	45075	59711	59711					0.06026323240428155
VTTLPSPSAQL	11	Unmodified	_VTTLPSPSAQL_					0	0	0			REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-SECPEP	A375_MHC_IP_R2	2	556.6848754882812	2	557.311146	1112.60774	-1.2226	-0.00068137	3.0481	0.0016988	1.8255	0.0010174	557.3136448019924	37.324	0.56193	38.095	37.867	38.429	0.7709					17	10	3	0	0	0	0.94168	1	13744	13744		10.8	2.644	1	4695500	+		61284	21742	44724	45076	59712	59712					0.05593977440616982
VTTLPSPSAQL	11	Unmodified	_VTTLPSPSAQL_					0	0	0			REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-MATCH	A375_MHC_IP_R1	1		2	557.311146	1112.60774	-0.89698	-0.0004999	3.2884	0.0018327	2.3915	0.0013328	557.3131576475635	38.298	0.50993	38.298	38.067	38.577	0	0.10153	1.6488E-05	NaN	7.1017	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5278800	+		61285	21742	44724	45076							0.05593977440616982
VTTMLSWVF	9	Unmodified	_VTTMLSWVF_					0	0	0		GABRE|p.S298F|6|0.59|ENSG00000102287|chrX:151955752-151955752|G/A|missense_variant	GABRE|p.S298F|6|0.59|ENSG00000102287|chrX:151955752-151955752|G/A|missense_variant	GABRE|p.S298F|6|0.59|ENSG00000102287|chrX:151955752-151955752|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	542.6546630859375	2	542.280803	1082.54705	-0.62665	-0.00033982	1.1083	0.00060099	0.48161	0.00026117	542.2817993753054	47.026	0.40879	47.787	47.613	48.022	0.76128					17	7	3	0	0	0	0.55359	1	17695	17695		28.487	11.4	1	1987800			61286	14032	44725	45077	59713	59713					0.009081688566993762
VTTMTMTMMV	10	Unmodified	_VTTMTMTMMV_					0	0	0			REV__ENST00000373696.7_1_X:70823497-70824427:+|nuORF	REV__ENST00000373696.7_1_X:70823497-70824427:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	573.6578979492188	2	573.257299	1144.50004	-0.555	-0.00031816	1.1321	0.00064899	0.57711	0.00033083	573.2577459390815	124.55	0.55692	124.55	124.29	124.85	0					16	10	2	0	0	0	0.6806	1	47022	47022		14.838	3.198	1	16887000	+		61287	24097	44726	45078	59714	59714					-0.06642518072635539
VTTNLKKVSI	10	Unmodified	_VTTNLKKVSI_					0	0	0		ENST00000523245.1_1_8:86129602-86132627:-|nuORF	ENST00000523245.1_1_8:86129602-86132627:-|nuORF	ENST00000523245.1_1_8:86129602-86132627:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	368.6325378417969	3	368.23253	1101.67576	0.066053	2.4323E-05	0.0061159	2.2521E-06	0.072168	2.6575E-05	368.2325419072621	86.096	0.45515	86.096	85.971	86.426	0					14	8	3	0	0	0	0.70972	1	31612	31612		7.9454	2.162	1	2049800			61288	13037	44727	45079	59715	59715					0.1289884709128728
VTTNLKKVSI	10	Unmodified	_VTTNLKKVSI_					0	0	0		ENST00000523245.1_1_8:86129602-86132627:-|nuORF	ENST00000523245.1_1_8:86129602-86132627:-|nuORF	ENST00000523245.1_1_8:86129602-86132627:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	368.6324768066406	3	368.23253	1101.67576	0.33934	0.00012495	-0.24178	-8.9033E-05	0.097553	3.5922E-05	368.2324432522854	84.967	0.40944	85.703	85.472	85.882	0.73601					12	7	2	0	0	0	0.70972	1	32339	32339		7.9454	2.162	1	1534500			61289	13037	44727	45079	59716	59716					0.1289884709128728
VTTPCEHTF	9	Unmodified	_VTTPCEHTF_					0	0	0		LONRF2|p.G465E|1|0.44|ENSG00000170500|chr2:100298918-100298918|C/T|missense_variant	LONRF2|p.G465E|1|0.44|ENSG00000170500|chr2:100298918-100298918|C/T|missense_variant	LONRF2|p.G465E|1|0.44|ENSG00000170500|chr2:100298918-100298918|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	517.7055053710938	2	517.734217	1033.45388	-0.42018	-0.00021754	-0.021536	-1.115E-05	-0.44172	-0.00022869	517.7340523903855	72.65	0.50803	72.65	72.372	72.88	0					17	9	2	0	0	0	0.55818	1	26417	26417		16.942	0	1	1912400			61290	14308	44728	45080	59717	59717					-0.061507555965590655
VTTPCEHTF	9	Unmodified	_VTTPCEHTF_					0	0	0		LONRF2|p.G465E|1|0.44|ENSG00000170500|chr2:100298918-100298918|C/T|missense_variant	LONRF2|p.G465E|1|0.44|ENSG00000170500|chr2:100298918-100298918|C/T|missense_variant	LONRF2|p.G465E|1|0.44|ENSG00000170500|chr2:100298918-100298918|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	517.734217	1033.45388	-0.42018	-0.00021754	-0.021536	-1.115E-05	-0.44172	-0.00022869	517.7340523903855	72.65	0.50803	72.65	72.372	72.88	0	-0.046571	0.00037618	NaN	16.942	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1912400			61291	14308	44728	45080							-0.061507555965590655
VTTRHVLLW	9	Unmodified	_VTTRHVLLW_					0	0	0		ENST00000416221.5_1_1:231658357-231663123:-|nuORF	ENST00000416221.5_1_1:231658357-231663123:-|nuORF	ENST00000416221.5_1_1:231658357-231663123:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	375.95721435546875	3	375.557348	1123.65021	0.42573	0.00015989	-0.28018	-0.00010522	0.14555	5.4663E-05	375.5572340239295	62.307	0.61424	62.307	61.943	62.557	0					30	10	4	0	0	0	0.1915	1	22478	22478		38.615	25	1	7295200			61292	11687	44729	45081	59718	59718					0.09333417359516716
VTTRHVLLW	9	Unmodified	_VTTRHVLLW_					0	0	0		ENST00000416221.5_1_1:231658357-231663123:-|nuORF	ENST00000416221.5_1_1:231658357-231663123:-|nuORF	ENST00000416221.5_1_1:231658357-231663123:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	563.2322998046875	2	562.832383	1123.65021	-0.34751	-0.00019559	0.95413	0.00053702	0.60662	0.00034142	562.8324830352577	62.275	0.56307	62.275	62.046	62.609	0					22	10	3	0	0	0	0.5205	1	22517	22517		38.615	24.033	1	2492400			61293	11687	44729	45081	59719	59719					0.09333417359516716
VTTRHVLLW	9	Unmodified	_VTTRHVLLW_					0	0	0		ENST00000416221.5_1_1:231658357-231663123:-|nuORF	ENST00000416221.5_1_1:231658357-231663123:-|nuORF	ENST00000416221.5_1_1:231658357-231663123:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	375.957275390625	3	375.557348	1123.65021	-0.036653	-1.3765E-05	0.0051971	1.9518E-06	-0.031455	-1.1813E-05	375.55725992996906	61.167	0.65455	61.912	61.618	62.272	0.74504					33	11	4	0	0	0	0.1915	2	23162	23162;23181		38.615	15.957	1	7410700			61294	11687	44729	45081	59720;59721	59720					0.09333417359516716
VTTRHVLLW	9	Unmodified	_VTTRHVLLW_					0	0	0		ENST00000416221.5_1_1:231658357-231663123:-|nuORF	ENST00000416221.5_1_1:231658357-231663123:-|nuORF	ENST00000416221.5_1_1:231658357-231663123:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	563.2322387695312	2	562.832383	1123.65021	-0.86082	-0.0004845	-0.10113	-5.6918E-05	-0.96195	-0.00054142	562.8322578769846	61.2	0.45259	61.945	61.668	62.121	0.74503					13	8	2	0	0	0	0.59927	1	23207	23207		31.268	13.122	1	3075200			61295	11687	44729	45081	59722	59722					0.09333417359516716
VTTTWERLY	9	Unmodified	_VTTTWERLY_					0	0	0		ENST00000547809.5_1_12:105570964-105626916:-|nuORF;nc|ENSG00000136044|Q8NEU8-2|APPL2;ENSG00000136044|ENST00000258530|APPL2;nc|ENSG00000136044|Q8NEU8-3|APPL2	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	585.2035522460938	2	584.803488	1167.59242	-0.17411	-0.00010182	-0.042168	-2.466E-05	-0.21627	-0.00012648	584.8033433389728	70.525	0.61345	70.525	70.237	70.85	0					24	11	3	0	0	0	0.012447	2	25589	25589;25625		93.166	45.417	1	5902200			61296	4745	44730	45082	59723;59724	59723					0.015331106434359754
VTTTWERLY	9	Unmodified	_VTTTWERLY_					0	0	0		ENST00000547809.5_1_12:105570964-105626916:-|nuORF;nc|ENSG00000136044|Q8NEU8-2|APPL2;ENSG00000136044|ENST00000258530|APPL2;nc|ENSG00000136044|Q8NEU8-3|APPL2	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	585.2032470703125	2	584.803488	1167.59242	-0.40432	-0.00023645	0.35643	0.00020844	-0.047892	-2.8007E-05	584.8037449055897	69.788	0.50906	70.522	70.335	70.844	0.73421					21	9	3	0	0	0	0.0092511	1	26449	26449		103.42	63.47	1	5664300			61297	4745	44730	45082	59725	59725					0.015331106434359754
VTTVSPGEE	9	Unmodified	_VTTVSPGEE_					0	0	0			REV__PDHA1|p.P51S|1|0.1|ENSG00000131828|chrX:19349970-19349970|C/T|missense_variant	REV__PDHA1|p.P51S|1|0.1|ENSG00000131828|chrX:19349970-19349970|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	459.6686096191406	2	459.724372	917.434192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.31	1	104.31	103.81	104.81	0								0	0	0	0.15283	1	38304	38304		16.942	3.0362	1		+		61298	27758	44731	45083	59726	59726					-0.02782808335655318
VTTVVNPKY	9	Unmodified	_VTTVVNPKY_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-SECPEP	A375_MHC_IP_R1	1	510.642822265625	2	510.78985	1019.56515	-0.35947	-0.00018362	-0.070814	-3.6171E-05	-0.43029	-0.00021979	510.789662386952	35.141	0.45731	35.141	34.912	35.369	0					19	8	3	0	0	0	0.38578	1	11636	11636		27.629	3.6082	1	6603400			61299	5837	44732	45084	59727	59727					0.056146271030456774
VTTVVNPKY	9	Unmodified	_VTTVVNPKY_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-SECPEP	A375_MHC_IP_R2	2	510.64276123046875	2	510.78985	1019.56515	-1.0098	-0.0005158	0.12716	6.495E-05	-0.88264	-0.00045085	510.7898192376893	34.382	0.51019	35.134	34.904	35.414	0.75225					20	9	3	0	0	0	0.31606	1	12402	12402		26.268	4.5215	1	7505500			61300	5837	44732	45084	59728	59728					0.056146271030456774
VTTVWSVE	8	Unmodified	_VTTVWSVE_					0	0	0		ENST00000369851.5_1_1:110134864-110135067:+|nuORF	ENST00000369851.5_1_1:110134864-110135067:+|nuORF	ENST00000369851.5_1_1:110134864-110135067:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	460.65478515625	2	460.739825	919.465098	-0.36458	-0.00016798	1.0506	0.00048405	0.68601	0.00031607	460.7398462434296	46.674	0.50615	46.674	46.395	46.901	0					13	9	2	0	0	0	0.97021	1	16335	16335		10.824	0	1	794570			61301	11142	44733	45085	59729	59729					0.002143897692462815
VTTVWSVE	8	Unmodified	_VTTVWSVE_					0	0	0		ENST00000369851.5_1_1:110134864-110135067:+|nuORF	ENST00000369851.5_1_1:110134864-110135067:+|nuORF	ENST00000369851.5_1_1:110134864-110135067:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	460.739825	919.465098	-0.39579	-0.00018236	0.40699	0.00018752	0.0112	5.1602E-06	460.7398472525819	45.993	0.50474	46.758	46.453	46.957	0.76519	0.041748	-0.00021399	NaN	10.824	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1002600			61302	11142	44733	45085							0.002143897692462815
VTVAFLFM	8	Unmodified	_VTVAFLFM_					0	0	0			REV__ENSG00000175538|ENST00000310128|KCNE3	REV__ENSG00000175538|ENST00000310128|KCNE3	MULTI-MSMS	A375_MHC_IP_R1	1	464.65350341796875	2	464.254057	926.493561	0.16262	7.5499E-05	-0.44855	-0.00020824	-0.28593	-0.00013274	464.2537457281164	113.42	2.2337	113.42	111.52	113.75	0					68	43	2	0	0	0	0.77717	2	41295	41295;41502		5.2307	0	1	3022100	+		61303	21350	44734	45086	59730;59731	59730					0.02737416144816507
VTVALREQV	9	Unmodified	_VTVALREQV_					0	0	0			REV__EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	REV__EFTUD2|p.S866Pfs*69|1|0.39|ENSG00000108883|chr17:44852528-44852528|A/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	508.2003479003906	2	507.800749	1013.58694	-0.76807	-0.00039003	0.035709	1.8133E-05	-0.73236	-0.00037189	507.80059095986746	30.824	0.81066	31.542	31.266	32.077	0.71857					24	15	2	0	0	0	0.4261	1	10844	10844		24.021	0.23079	1	4583700	+		61304	16069	44735	45087	59732	59732					0.08069431851606623
VTVCNQCG	8	Unmodified	_VTVCNQCG_					0	0	0		nc|ENSG00000090686|Q86UV5-4|USP48;nc|ENSG00000090686|Q86UV5-7|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;USP48|p.R228K|1|0.45|ENSG00000090686|chr1:21751598-21751598|C/T|missense_variant	nc|ENSG00000090686|Q86UV5-4|USP48	nc|ENSG00000090686|Q86UV5-4|USP48	MULTI-MSMS	A375_MHC_IP_R2	2	412.57586669921875	2	412.175481	822.336409	0.038069	1.5691E-05	0.62666	0.00025829	0.66473	0.00027399	412.17573260381386	131.63	0.25365	131.82	131.7	131.95	0.18953					6	4	2	0	0	0	0.77603	1	51804	51804		9.3474	1.4373	1	10780000			61305	1959	44736	45088	59733	59733					-0.08186611737005478
VTVDPALLPPA	11	Unmodified	_VTVDPALLPPA_					0	0	0		nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	nc|ENSG00000198589|P50851-2|LRBA	nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	A375_MHC_IP_R2	2	546.1412353515625	2	546.818607	1091.62266	-0.69068	-0.00037768	0.28379	0.00015518	-0.40689	-0.0002225	546.8182996611183	68.024	0.35719	68.76	68.611	68.968	0.73512					11	6	2	0	0	0	0.99332	1	25729	25729		13.042	8.7132	1	945330			61306	9287	44737	45089	59734	59734					0.08051469308611559
VTVDPALLPPA	11	Unmodified	_VTVDPALLPPA_					0	0	0		nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	nc|ENSG00000198589|P50851-2|LRBA	nc|ENSG00000198589|P50851-2|LRBA	MULTI-MATCH	A375_MHC_IP_R1	1		2	546.818607	1091.62266	-0.38507	-0.00021057	-0.83219	-0.00045505	-1.2173	-0.00066562	546.8178302097831	68.918	0.45441	68.918	68.616	69.07	0	0.079114	-0.00096621	NaN	13.042	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1190800			61307	9287	44737	45089							0.08051469308611559
VTVDRHFSV	9	Unmodified	_VTVDRHFSV_					0	0	0			REV__LMTK3|p.G1355R|1|0.44|ENSG00000142235|chr19:48493723-48493723|C/T|missense_variant	REV__LMTK3|p.G1355R|1|0.44|ENSG00000142235|chr19:48493723-48493723|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	530.6823120117188	2	530.282723	1058.55089	-0.58213	-0.00030869	-0.25162	-0.00013343	-0.83375	-0.00044212	530.282639236972	50.673	0.66043	50.673	50.357	51.017	0					32	12	4	0	0	0	0.14606	1	17912	17912		40.239	0	1	16722000	+		61308	26936	44738	45090	59735	59735					0.023959746747550525
VTVEDLIKPRL	11	Unmodified	_VTVEDLIKPRL_					0	0	0		ENSG00000105641|ENST00000222248|SLC5A5	ENSG00000105641|ENST00000222248|SLC5A5	ENSG00000105641|ENST00000222248|SLC5A5	MULTI-MSMS	A375_MHC_IP_R2	2	428.6033630371094	3	428.262489	1281.76564	-0.39194	-0.00016785	0.16152	6.9173E-05	-0.23042	-9.868E-05	428.26260570106325	50.232	0.40523	50.986	50.753	51.159	0.75406					12	7	2	0	0	0	0.73502	1	18828	18828		4.1166	1.8639	1	2211400			61309	2620	44739	45091	59736	59736					0.13602476699861654
VTVEEEDPPP	10	Unmodified	_VTVEEEDPPP_					0	0	0			REV__nc|ENSG00000102001|O60840-5|CACNA1F	REV__nc|ENSG00000102001|O60840-5|CACNA1F	MULTI-MSMS	A375_MHC_IP_R1	1	556.1802368164062	2	556.261319	1110.50808	-0.50219	-0.00027935	0.23557	0.00013104	-0.26661	-0.00014831	556.2613375401919	31.552	0.45677	31.552	31.312	31.769	0					25	8	4	0	0	0	0.30274	1	10181	10181		39.957	1.9833	1	8713400	+		61310	17199	44740	45092	59737	59737					-0.042748849640020126
VTVEEEDPPP	10	Unmodified	_VTVEEEDPPP_					0	0	0			REV__nc|ENSG00000102001|O60840-5|CACNA1F	REV__nc|ENSG00000102001|O60840-5|CACNA1F	MULTI-SECPEP	A375_MHC_IP_R1	1	556.6608276367188	2	556.261319	1110.50808	-0.50219	-0.00027935	0.23557	0.00013104	-0.26661	-0.00014831	556.2613375401919	31.552	0.45677	31.552	31.312	31.769	0					25	8	4	0	0	0	0.22217	1	10093	10093		56.177	0	1	8713400	+		61311	17199	44740	45092	59738	59738					-0.042748849640020126
VTVEEEDPPP	10	Unmodified	_VTVEEEDPPP_					0	0	0			REV__nc|ENSG00000102001|O60840-5|CACNA1F	REV__nc|ENSG00000102001|O60840-5|CACNA1F	MULTI-MSMS	A375_MHC_IP_R2	2	556.1796875	2	556.261319	1110.50808	-0.80338	-0.00044689	-0.32397	-0.00018021	-1.1273	-0.0006271	556.2611531412743	30.931	0.75871	31.65	31.216	31.974	0.71857					26	14	3	0	0	0	0.092645	1	10957	10957		65.235	9.058	1	11556000	+		61312	17199	44740	45092	59739	59739					-0.042748849640020126
VTVEEPLTIN	10	Unmodified	_VTVEEPLTIN_					0	0	0			REV__ENSG00000156273|ENST00000286800|BACH1	REV__ENSG00000156273|ENST00000286800|BACH1	MSMS	A375_MHC_IP_R2	2	557.7000122070312	2	557.803154	1113.59175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.598	1	93.338	92.838	93.838	0.73902								0	0	0	0.15158	1	35213	35213		14.838	0.25658	1		+		61313	19974	44741	45093	59740	59740					0.039502712037119636
VTVEFWIKL	9	Unmodified	_VTVEFWIKL_					0	0	0		tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1	tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1	tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	378.6056823730469	3	378.890104	1133.64848	-0.32861	-0.00012451	-0.29593	-0.00011213	-0.62454	-0.00023663	378.8899312949071	26.145	0.76345	26.805	26.194	26.957	0.65992					16	14	2	0	0	0	0.75466	1	8563	8563		0.96228	0	1	975460			61314	29747	44742	45094	59741	59741					0.08700363550883594
VTVELALRKS	10	Unmodified	_VTVELALRKS_					0	0	0			REV__nc|ENSG00000089012|Q9P1W8-2|SIRPG	REV__nc|ENSG00000089012|Q9P1W8-2|SIRPG	MULTI-SECPEP	A375_MHC_IP_R1	1	373.2807922363281	3	372.564279	1114.67101	0.33597	0.00012517	1.6404	0.00061115	1.9764	0.00073632	372.5648592680968	33.479	0.45737	33.479	33.241	33.698	0					11	8	2	0	0	0	0.94587	1	10971	10971		0.69767	0.5748	1	1033900	+		61315	16899	44743	45095	59742	59742					0.11825962948501001
VTVFPNLRV	9	Unmodified	_VTVFPNLRV_					0	0	0		ENST00000301732.9_1_16:2379695-2379815:-|nuORF	ENST00000301732.9_1_16:2379695-2379815:-|nuORF	ENST00000301732.9_1_16:2379695-2379815:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1809692382812	2	522.813659	1043.61277	-0.65564	-0.00034278	0.097608	5.1031E-05	-0.55804	-0.00029175	522.8136421476285	55.422	0.71014	56.173	55.881	56.591	0.75075					34	13	3	0	0	0	0.27742	1	21024	21024		36.506	36.506	1	13964000			61316	10545	44744	45096	59743	59743					0.09270326093883341
VTVGDHRR	8	Unmodified	_VTVGDHRR_					0	0	0		ENST00000488418.2_1_1:1208367-1208592:-|nuORF	ENST00000488418.2_1_1:1208367-1208592:-|nuORF	ENST00000488418.2_1_1:1208367-1208592:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	470.6590881347656	2	470.259582	938.504612	-0.33944	-0.00015962	0.30271	0.00014235	-0.036732	-1.7273E-05	470.25965366790314	103.95	0.76369	103.95	103.68	104.44	0					24	14	2	0	0	0	0.68964	1	38150	38150		37.974	37.974	1	6283200			61317	12615	44745	45097	59744	59744					0.03289954563331321
VTVGDHRR	8	Unmodified	_VTVGDHRR_					0	0	0		ENST00000488418.2_1_1:1208367-1208592:-|nuORF	ENST00000488418.2_1_1:1208367-1208592:-|nuORF	ENST00000488418.2_1_1:1208367-1208592:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	470.65924072265625	2	470.259582	938.504612	-0.58479	-0.000275	-0.068813	-3.236E-05	-0.6536	-0.00030736	470.2595370070996	103.06	0.71201	103.82	103.48	104.19	0.76428					23	13	2	0	0	0	0.68964	1	39006	39006		37.974	37.974	1	5775300			61318	12615	44745	45097	59745	59745					0.03289954563331321
VTVGDHRR	8	Unmodified	_VTVGDHRR_					0	0	0		ENST00000488418.2_1_1:1208367-1208592:-|nuORF	ENST00000488418.2_1_1:1208367-1208592:-|nuORF	ENST00000488418.2_1_1:1208367-1208592:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	470.259582	938.504612	-0.33944	-0.00015962	0.30271	0.00014235	-0.036732	-1.7273E-05	470.25965366790314	103.95	0.76369	103.95	103.68	104.44	0	0.065036	0.00020693	NaN	37.974	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6283200			61319	12615	44745	45097							0.03289954563331321
VTVGDHRR	8	Unmodified	_VTVGDHRR_					0	0	0		ENST00000488418.2_1_1:1208367-1208592:-|nuORF	ENST00000488418.2_1_1:1208367-1208592:-|nuORF	ENST00000488418.2_1_1:1208367-1208592:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	470.259582	938.504612	-0.58479	-0.000275	-0.068813	-3.236E-05	-0.6536	-0.00030736	470.2595370070996	103.06	0.71201	103.82	103.48	104.19	0.76428	-0.065036	-0.00014249	NaN	37.974	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5775300			61320	12615	44745	45097							0.03289954563331321
VTVIVEDRKF	10	Unmodified	_VTVIVEDRKF_					0	0	0		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-MSMS	A375_MHC_IP_R1	1	402.61224365234375	3	402.567801	1204.68157	-0.11046	-4.4466E-05	0.42991	0.00017307	0.31945	0.0001286	402.56789576023397	45.509	0.30229	45.509	45.334	45.636	0					10	5	2	0	0	0	0.6806	1	15900	15900		14.838	1.982	1	1554700			61321	8088	44746	45098	59746	59746					0.08741945602923806
VTVIVEDRKF	10	Unmodified	_VTVIVEDRKF_					0	0	0		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-MATCH	A375_MHC_IP_R2	2		3	402.567801	1204.68157	-0.1043	-4.1986E-05	0.14723	5.927E-05	0.042932	1.7283E-05	402.56769084010193	44.697	0.30443	45.466	45.239	45.543	0.7691	-0.021111	-0.00026009	NaN	14.838	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	964640			61322	8088	44746	45098							0.08741945602923806
VTVKKRQS	8	Unmodified	_VTVKKRQS_					0	0	0		nc|ENSG00000204053|P12525|MYCLP1	nc|ENSG00000204053|P12525|MYCLP1	nc|ENSG00000204053|P12525|MYCLP1	MSMS	A375_MHC_IP_R2	2	473.1445617675781	2	473.295633	944.576714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.797	1	82.54	82.04	83.04	0.74293								0	0	0	0.16876	1	31071	31071		8.5933	0	1				61323	14855	44747	45099	59747	59747					0.1022086891704248
VTVKRGDR	8	Unmodified	_VTVKRGDR_					0	0	0			REV__ENSG00000104549|ENST00000265896|SQLE	REV__ENSG00000104549|ENST00000265896|SQLE	MULTI-MSMS	A375_MHC_IP_R2	2	466.17730712890625	2	465.777608	929.540663	-0.60072	-0.0002798	0.47886	0.00022304	-0.12186	-5.6759E-05	465.77774664286704	109.18	2.0897	109.92	108.29	110.38	0.74684					97	40	3	0	0	0	0.77583	1	41201	41201		10.074	10.074	1	13575000	+		61324	17327	44748	45100	59748	59748					0.07307411740180214
VTVKSAIRRL	10	Unmodified	_VTVKSAIRRL_					0	0	0		ENST00000420712.1_1_2:217364102-217366124:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A	ENST00000420712.1_1_2:217364102-217366124:+|nuORF	ENST00000420712.1_1_2:217364102-217366124:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	381.6253967285156	3	381.583785	1141.72953	0.3027	0.00011551	-0.42407	-0.00016182	-0.12136	-4.6309E-05	381.5836557877795	28.313	0.35262	28.313	28.138	28.491	0					11	6	2	0	0	0	0.70682	1	8705	8705		9.2438	3.4603	1	2307900			61325	9192	44749	45101	59749	59749					0.16433064313650902
VTVKSAIRRL	10	Unmodified	_VTVKSAIRRL_					0	0	0		ENST00000420712.1_1_2:217364102-217366124:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A	ENST00000420712.1_1_2:217364102-217366124:+|nuORF	ENST00000420712.1_1_2:217364102-217366124:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	381.62518310546875	3	381.583785	1141.72953	0.0237	9.0434E-06	0.13207	5.0396E-05	0.15577	5.9439E-05	381.5838682647084	27.471	0.30523	28.149	27.996	28.301	0.67857					8	5	2	0	0	0	0.69875	1	9385	9385		12.856	3.8797	1	2707400			61326	9192	44749	45101	59750	59750					0.16433064313650902
VTVLKRNKK	9	Unmodified	_VTVLKRNKK_					0	0	0		ENSG00000166152|ENST00000299191|C16orf78	ENSG00000166152|ENST00000299191|C16orf78	ENSG00000166152|ENST00000299191|C16orf78	MULTI-MSMS	A375_MHC_IP_R2	2	543.7604370117188	2	543.361308	1084.70806	-0.62941	-0.000342	-0.12566	-6.8277E-05	-0.75507	-0.00041027	543.3611942850745	149.73	0.95453	149.75	149.06	150.01	0.01825					91	46	2	0	0	0	0.77827	1	58029	58029		0	0	1	210590			61327	7029	44750	45102	59751	59751					0.16909679284913182
VTVLKRNKK	9	Unmodified	_VTVLKRNKK_					0	0	0		ENSG00000166152|ENST00000299191|C16orf78	ENSG00000166152|ENST00000299191|C16orf78	ENSG00000166152|ENST00000299191|C16orf78	MULTI-MATCH	A375_MHC_IP_R1	1		2	543.361308	1084.70806	-0.93835	-0.00050986	0.0055736	3.0285E-06	-0.93278	-0.00050683	543.3612570189971	149.61	1.2966	149.61	148.71	150	0	-0.066379	6.5877E-05	NaN	0	87	48	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250460			61328	7029	44750	45102							0.16909679284913182
VTVMQGARLI	10	Unmodified	_VTVMQGARLI_					0	0	0			REV__ENSG00000176619|ENST00000325327|LMNB2	REV__ENSG00000176619|ENST00000325327|LMNB2	MULTI-SECPEP	A375_MHC_IP_R2	2	362.9607238769531	3	363.214593	1086.62195	0.098859	3.5907E-05	0.84911	0.00030841	0.94797	0.00034432	363.5489680571646	47.22	0.30629	47.982	47.817	48.123	0.76127					6	5	2	0	0	0	0.9269	1	17682	17682		1.7423	0	1	864880	+		61329	21412	44751	45103	59752	59752					0.08210351387924675
VTVMRMPAF	9	Unmodified	_VTVMRMPAF_					0	0	0			REV__ENST00000565830.5_1_16:29841852-29843003:+|nuORF	REV__ENST00000565830.5_1_16:29841852-29843003:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	526.6869506835938	2	526.274998	1050.53544	-0.48249	-0.00025392	-0.49337	-0.00025965	-0.97586	-0.00051357	526.2774057821852	74.775	1.1632	74.775	74.451	75.614	0					30	22	3	0	0	0	0.71541	1	27520	27520		16.942	5.302	1	1151600	+		61330	16232	44752	45104	59753	59753					0.012196485617096187
VTVNLHTTL	9	Unmodified	_VTVNLHTTL_					0	0	0			REV__PCDHB8|p.M438V|1|0.05|ENSG00000120322|chr5:141179346-141179346|A/G|missense_variant	REV__PCDHB8|p.M438V|1|0.05|ENSG00000120322|chr5:141179346-141179346|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	498.6739807128906	2	499.287474	996.560395	-0.43375	-0.00021656	-1.1514	-0.00057489	-1.5852	-0.00079146	499.28727660597525	58.946	0.35688	58.946	58.786	59.143	0					9	6	2	0	0	0	0.35487	1	21236	21236		29.082	14.243	1	740370	+		61331	27738	44753	45105	59754	59754					0.061977429602734446
VTVNYRPR	8	Unmodified	_VTVNYRPR_					0	0	0		ENST00000228799.6_1_12:2933460-2933670:+|nuORF	ENST00000228799.6_1_12:2933460-2933670:+|nuORF	ENST00000228799.6_1_12:2933460-2933670:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1612243652344	2	502.785433	1003.55631	-0.83278	-0.00041871	0.3983	0.00020026	-0.43448	-0.00021845	502.7854144278085	34.569	0.30404	35.329	35.168	35.472	0.75972					12	5	3	0	0	0	0.8957	1	12543	12543		21.747	11.673	1	2434600			61332	10130	44754	45106	59755	59755					0.05467698257223219
VTVPADDFNV	10	Unmodified	_VTVPADDFNV_					0	0	0			REV__nc|ENSG00000105953|Q02218-2|OGDH	REV__nc|ENSG00000105953|Q02218-2|OGDH	MULTI-MSMS	A375_MHC_IP_R1	1	539.6861572265625	2	538.766571	1075.51859	-0.63146	-0.00034021	0.22527	0.00012137	-0.40619	-0.00021884	538.7668690787842	104.35	0.56058	104.35	104.08	104.64	0					22	10	3	0	0	0	0.51963	1	38307	38307		26.884	6.43	1	1743100	+		61333	27160	44755	45107	59756	59756					-0.01614857518916324
VTVPANVQRW	10	Unmodified	_VTVPANVQRW_					0	0	0		ENSG00000106305|ENST00000223029|AIMP2;nc|ENSG00000106305|Q13155-2|AIMP2	ENSG00000106305|ENST00000223029|AIMP2	ENSG00000106305|ENST00000223029|AIMP2	MULTI-SECPEP	A375_MHC_IP_R2	2	585.7245483398438	2	585.324922	1168.63529	-0.82776	-0.00048451	-1.6378	-0.00095865	-2.4656	-0.0014432	585.8249602218892	58.455	0.66227	59.204	58.879	59.542	0.74894					27	12	3	0	0	0	0.51493	1	22176	22176		31.268	7.2478	1	7465800			61334	2683	44756	45108	59757	59757					0.057719254914900375
VTVPAPPR	8	Unmodified	_VTVPAPPR_					0	0	0		ENST00000340022.6_2_7:91874891-91875065:-|nuORF	ENST00000340022.6_2_7:91874891-91875065:-|nuORF	ENST00000340022.6_2_7:91874891-91875065:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	419.15338134765625	2	418.75307	835.491587	0.53711	0.00022492	-0.3182	-0.00013325	0.21891	9.1671E-05	418.75296150285385	48.465	0.45517	48.465	48.274	48.729	0					14	8	2	0	0	0	0.72008	1	17113	17113		28.487	0	1	3365500			61335	10851	44757	45109	59758	59758					0.0672612345122161
VTVPAPPR	8	Unmodified	_VTVPAPPR_					0	0	0		ENST00000340022.6_2_7:91874891-91875065:-|nuORF	ENST00000340022.6_2_7:91874891-91875065:-|nuORF	ENST00000340022.6_2_7:91874891-91875065:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	418.75307	835.491587	0.094301	3.9489E-05	0.073012	3.0574E-05	0.16731	7.0063E-05	418.75299145005823	47.485	0.40758	48.247	47.97	48.378	0.76128	-0.10937	0.00013934	NaN	28.487	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7273600			61336	10851	44757	45109							0.0672612345122161
VTVPDSITSW	10	Unmodified	_VTVPDSITSW_					0	0	0		nc|ENSG00000156535|Q6YHK3-2|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	MULTI-SECPEP	A375_MHC_IP_R1	1	553.1820678710938	2	552.782222	1103.54989	-0.30116	-0.00016648	0.30793	0.00017022	0.0067736	3.7443E-06	552.7823060522769	107.86	0.71114	107.86	107.6	108.31	0					20	13	2	0	0	0	0.082288	1	39545	39545		65.235	19.214	1	3680500			61337	6199	44758	45110	59759	59759					0.0022571551517103217
VTVPDSITSW	10	Unmodified	_VTVPDSITSW_					0	0	0		nc|ENSG00000156535|Q6YHK3-2|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	MULTI-SECPEP	A375_MHC_IP_R2	2	553.1818237304688	2	552.782222	1103.54989	-0.85189	-0.00047091	0.40784	0.00022545	-0.44405	-0.00024546	552.782217513365	107.22	0.65903	107.98	107.59	108.25	0.75436					26	12	3	0	0	0	0.013544	1	40479	40479		136.33	58.184	1	3714700			61338	6199	44758	45110	59760	59760					0.0022571551517103217
VTVPDVEV	8	Unmodified	_VTVPDVEV_					0	0	0		ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;AHNAK2|p.S3435F|1|0.2|ENSG00000185567|chr14:104945147-104945147|G/A|missense_variant	ENSG00000185567|ENST00000333244|AHNAK2	ENSG00000185567|ENST00000333244|AHNAK2	MULTI-SECPEP	A375_MHC_IP_R1	1	429.6329650878906	2	429.234376	856.454199	-0.26487	-0.00011369	0.4397	0.00018874	0.17483	7.5044E-05	429.2331189938673	41.878	1.1698	41.878	41.317	42.487	0					29	22	2	0	0	0	0.94479	1	14500	14500		8.5933	3.3626	1	2975300			61339	8676	44759	45111	59761	59761					0.02022987394957454
VTVPQRIEQF	10	Unmodified	_VTVPQRIEQF_					0	0	0			REV__DSP|p.G2212E|3|0.11|ENSG00000096696|chr6:7583897-7583897|G/A|missense_variant	REV__DSP|p.G2212E|3|0.11|ENSG00000096696|chr6:7583897-7583897|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	406.62762451171875	3	406.227667	1215.66117	-0.33005	-0.00013408	0.14791	6.0084E-05	-0.18214	-7.3991E-05	406.227719993274	40.843	0.40369	40.843	40.609	41.013	0					19	7	3	0	0	0	0.47932	1	14066	14066		29.437	0	1	4826100	+		61340	16042	44760	45112	59762	59762					0.06196774943123273
VTVPQRIEQF	10	Unmodified	_VTVPQRIEQF_					0	0	0			REV__DSP|p.G2212E|3|0.11|ENSG00000096696|chr6:7583897-7583897|G/A|missense_variant	REV__DSP|p.G2212E|3|0.11|ENSG00000096696|chr6:7583897-7583897|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	405.6399230957031	3	406.227667	1215.66117	-0.33005	-0.00013408	0.14791	6.0084E-05	-0.18214	-7.3991E-05	406.227719993274	40.843	0.40369	40.843	40.609	41.013	0					19	7	3	0	0	0	0.77204	1	14096	14096		29.437	0	1	4826100	+		61341	16042	44760	45112	59763	59763					0.06196774943123273
VTVQDFRVNKR	11	Unmodified	_VTVQDFRVNKR_					0	0	0			REV__ENSG00000110925|ENST00000228515|CSRNP2	REV__ENSG00000110925|ENST00000228515|CSRNP2	MULTI-SECPEP	A375_MHC_IP_R1	1	681.7847290039062	2	681.386042	1360.75753	-0.63788	-0.00043464	-0.91151	-0.00062109	-1.5494	-0.0010557	681.3854043172963	75.645	0.45241	75.645	75.413	75.865	0					13	8	2	0	0	0	0.97182	1	27565	27565		18.373	10.218	1	3671700	+		61342	17646	44761	45113	59764	59764					0.09158342503064887
VTVQRRLPI	9	Unmodified	_VTVQRRLPI_					0	0	0			REV__nc|ENSG00000066468|P21802-2|FGFR2	REV__nc|ENSG00000066468|P21802-2|FGFR2	MSMS	A375_MHC_IP_R2	2	541.2910766601562	2	541.345658	1080.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.504	1	94.249	93.749	94.749	0.74474								0	0	0	0.15486	1	35546	35546		4.756	0	1		+		61343	16518	44762	45114	59765	59765					0.139651062508392
VTVQSLLTV	9	Unmodified	_VTVQSLLTV_					0	0	0		ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	MULTI-MSMS	A375_MHC_IP_R1	1	480.6913146972656	2	480.292225	958.569897	-0.32247	-0.00015488	-1.4318	-0.00068767	-1.7542	-0.00084255	480.2913501592126	128.46	0.35464	128.46	128.33	128.68	0					11	6	3	0	0	0	0.0092471	1	49357	49357		103.35	7.2426	1	20115000			61344	8420	44763	45115	59766	59766					0.0889551124580521
VTVRFDFV	8	Unmodified	_VTVRFDFV_					0	0	0			REV__PTPRJ|p.S458F|1|0.25|ENSG00000149177|chr11:48130474-48130474|C/T|missense_variant	REV__PTPRJ|p.S458F|1|0.25|ENSG00000149177|chr11:48130474-48130474|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	492.11004638671875	2	491.77146	981.528367	-0.3314	-0.00016297	0.017791	8.7493E-06	-0.31361	-0.00015422	491.77136389514266	81.429	0.9109	81.429	81.1	82.011	0					31	17	3	0	0	0	0.76248	1	29870	29870		16.942	16.942	1	9752600	+		61345	27860	44764	45116	59767	59767					0.03686375277140996
VTVRIRRKRR	10	Unmodified	_VTVRIRRKRR_					0	0	0		ENST00000480896.5_1_21:47746291-47746405:+|nuORF	ENST00000480896.5_1_21:47746291-47746405:+|nuORF	ENST00000480896.5_1_21:47746291-47746405:+|nuORF	MSMS	A375_MHC_IP_R2	2	670.3812866210938	2	670.447103	1338.87965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.43	1	118.09	117.59	118.59	0.65962								0	0	0	0.15591	1	44437	44437		1.6526	0	1				61346	12504	44765	45117	59768	59768					0.22376849095940088
VTVRKDGR	8	Unmodified	_VTVRKDGR_					0	0	0		nc|ENSG00000168661|P17039-3|ZNF30;ENSG00000168661|ENST00000601142|ZNF30;nc|ENSG00000168661|P17039-2|ZNF30	nc|ENSG00000168661|P17039-3|ZNF30	nc|ENSG00000168661|P17039-3|ZNF30	MULTI-MSMS	A375_MHC_IP_R1	1	466.1773986816406	2	465.777608	929.540663	-0.092975	-4.3305E-05	0.17253	8.0363E-05	0.07956	3.7057E-05	465.7775745830269	111.19	0.76704	111.19	110.9	111.67	0					26	14	3	0	0	0	0.7766	1	40819	40819		7.2892	0	1	8667200			61347	7331	44766	45118	59769	59769					0.07307411740180214
VTVRKDGR	8	Unmodified	_VTVRKDGR_					0	0	0		nc|ENSG00000168661|P17039-3|ZNF30;ENSG00000168661|ENST00000601142|ZNF30;nc|ENSG00000168661|P17039-2|ZNF30	nc|ENSG00000168661|P17039-3|ZNF30	nc|ENSG00000168661|P17039-3|ZNF30	MULTI-SECPEP	A375_MHC_IP_R2	2	465.16986083984375	2	465.777608	929.540663	-0.4349	-0.00020257	0.82797	0.00038565	0.39307	0.00018308	465.7777711190306	112.64	1.2275	113.36	113.07	114.3	0.72459					46	23	4	0	0	0	0.972	1	42667	42667		7.2892	0	1	7580700			61348	7331	44766	45118	59770	59770					0.07307411740180214
VTVRKKKG	8	Unmodified	_VTVRKKKG_					0	0	0		ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	MULTI-SECPEP	A375_MHC_IP_R1	1	916.3170166015625	1	915.609811	914.602535	0.28934	0.00026492	1.175	0.0010758	1.4643	0.0013407	915.6115616975889	115.4	0.20486	115.4	115.32	115.53	0					5	3	2	0	0	0	0.972	1	42348	42348		2.3027	0	1	1371200			61349	3236	44767	45119	59771	59771					0.1418176315931987
VTVRPARN	8	Unmodified	_VTVRPARN_					0	0	0			REV__ENSG00000160194|ENST00000354250|NDUFV3	REV__ENSG00000160194|ENST00000354250|NDUFV3	MSMS	A375_MHC_IP_R2	2	456.68011474609375	2	456.772326	911.530098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.67	1	129.89	129.39	130.39	0.2142								0	0	0	0.16876	1	50959	50959		4.756	0	1		+		61350	20151	44768	45120	59772	59772					0.07079429085740685
VTVRPSQSFHQ	11	Unmodified	_VTVRPSQSFHQ_					0	0	0			REV__ENSG00000179698|ENST00000323662|WDR97	REV__ENSG00000179698|ENST00000323662|WDR97	MSMS	A375_MHC_IP_R2	2	643.0143432617188	2	643.336018	1284.65748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.165	1	89.897	89.397	90.397	0.7318								0	0	0	0.16223	1	33935	33935		7.1017	0.89594	1		+		61351	21576	44769	45121	59773	59773					0.02654105169290233
VTVRQNKT	8	Unmodified	_VTVRQNKT_					0	0	0			REV__tr|U7SWX3|U7SWX3_FUSNUuroporphyrinogen-IIIC-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01206PE=4SV=1	REV__tr|U7SWX3|U7SWX3_FUSNUuroporphyrinogen-IIIC-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01206PE=4SV=1	MSMS	A375_MHC_IP_R2	2	473.6585693359375	2	473.277441	944.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.693	1	76.434	75.934	76.934	0.74052								0	0	0	0.16876	1	28733	28733		11.64	0	1		+		61352	28613	44770	45122	59774	59774					0.06583992020318874
VTVRVQVSLQY	11	Unmodified	_VTVRVQVSLQY_					0	0	0		ENST00000520548.1_1_5:158636745-158636796:-|nuORF	ENST00000520548.1_1_5:158636745-158636796:-|nuORF	ENST00000520548.1_1_5:158636745-158636796:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	431.2879333496094	3	431.250472	1290.72959	-0.31076	-0.00013402	-0.41797	-0.00018025	-0.72873	-0.00031427	431.2502312903515	45.177	0.30227	45.943	45.796	46.099	0.76518					8	5	2	0	0	0	0.99916	1	16934	16934		1.1098	0	1	872260			61353	12997	44771	45123	59775	59775					0.09585019523001392
VTVSKPVI	8	Unmodified	_VTVSKPVI_					0	0	0		ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENST00000509741.1_1_5:75970496-75973199:+|nuORF	ENSG00000145703|ENST00000274364|IQGAP2	ENSG00000145703|ENST00000274364|IQGAP2	MULTI-SECPEP	A375_MHC_IP_R2	2	421.6345520019531	2	421.770929	841.527304	-0.13445	-5.6706E-05	2.0199	0.00085192	1.8854	0.00079522	421.77082811042436	67.232	0.66028	67.968	67.648	68.308	0.73631					15	12	2	0	0	0	0.86263	1	25485	25485		34.102	0	1	476240			61354	5571	44772	45124	59776	59776					0.10020160908231901
VTVSRIRNI	9	Unmodified	_VTVSRIRNI_					0	0	0			REV__ENSG00000111647|ENST00000279907|BLTP3B	REV__ENSG00000111647|ENST00000279907|BLTP3B	MULTI-SECPEP	A375_MHC_IP_R1	1	528.6375732421875	2	529.327465	1056.64038	-0.33945	-0.00017968	0.042451	2.2471E-05	-0.297	-0.00015721	529.3275419592946	43.171	0.50975	43.171	42.841	43.351	0					14	9	2	0	0	0	0.55359	1	15008	15008		6.7232	0	1	4310800	+		61355	17682	44773	45125	59777	59777					0.11432229354136325
VTVSVAIVPI	10	Unmodified	_VTVSVAIVPI_					0	0	0			REV__nc|ENSG00000145242|P54756-3|EPHA5	REV__nc|ENSG00000145242|P54756-3|EPHA5	MULTI-SECPEP	A375_MHC_IP_R1	1	499.64239501953125	2	499.318243	996.621933	-0.39277	-0.00019612	-0.046764	-2.335E-05	-0.43954	-0.00021947	499.3181847035647	87.697	0.55973	87.697	87.441	88	0					17	10	2	0	0	0	0.78945	1	32252	32252		19.257	0	1	1592800	+		61356	19468	44774	45126	59778	59778					0.12348674659551762
VTVTKRKTLV	10	Unmodified	_VTVTKRKTLV_					0	0	0			REV__nc|ENSG00000099331|Q13459-2|MYO9B	REV__nc|ENSG00000099331|Q13459-2|MYO9B	MULTI-SECPEP	A375_MHC_IP_R1	1	573.2739868164062	2	572.874248	1143.73394	-0.59958	-0.00034348	-0.051687	-2.961E-05	-0.65127	-0.00037309	572.8739875868907	147.23	0.17569	147.23	147.15	147.32	0					39	21	3	0	0	0	0.95069	1	56276	56276		0	0	1	161250	+		61357	17018	44775	45127	59779	59779					0.16782528736553104
VTVVELFHCV	10	Unmodified	_VTVVELFHCV_					0	0	0			REV__ENST00000602788.5_1_17:45625668-45656767:+|nuORF	REV__ENST00000602788.5_1_17:45625668-45656767:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	382.1346740722656	3	382.538965	1144.59507	0.027134	1.038E-05	1.4331	0.00054822	1.4603	0.0005586	382.5397150165963	38.293	0.76427	38.293	38.067	38.832	0					19	14	2	0	0	0	0.9269	1	12919	12919		0.62683	0	1	4245900	+		61358	26517	44776	45128	59780	59780					0.028552427767181143
VTVVPATESD	10	Unmodified	_VTVVPATESD_					0	0	0			REV__CD84|p.G66E|1|0.58|ENSG00000066294|chr1:160565595-160565595|C/T|missense_variant	REV__CD84|p.G66E|1|0.58|ENSG00000066294|chr1:160565595-160565595|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	508.6755065917969	2	509.258579	1016.50261	-0.5738	-0.00029221	-0.35589	-0.00018124	-0.92969	-0.00047345	509.2585048247983	85.68	0.56046	86.416	86.085	86.645	0.73601					16	10	2	0	0	0	0.8125	1	32597	32597		13.042	5.7532	1	1938200	+		61359	15616	44777	45129	59781	59781					-0.0049856375580930035
VTVWPNKKMP	10	Unmodified	_VTVWPNKKMP_					0	0	0			REV__ENST00000463433.1_1_2:238999874-239004239:+|nuORF	REV__ENST00000463433.1_1_2:238999874-239004239:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	600.7338256835938	2	600.333901	1198.65325	-0.013436	-8.0659E-06	-0.055941	-3.3583E-05	-0.069377	-4.1649E-05	600.3336810768751	127.48	0.45457	127.48	127.22	127.67	0					16	8	2	0	0	0	0.70925	1	48913	48913		8.1555	0	1	9037000	+		61360	24999	44778	45130	59782	59782					0.06186924421990625
VTWAAEGR	8	Unmodified	_VTWAAEGR_					0	0	0		ENST00000588238.1_1_19:4448313-4448511:-|nuORF	ENST00000588238.1_1_19:4448313-4448511:-|nuORF	ENST00000588238.1_1_19:4448313-4448511:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	445.63006591796875	2	445.229959	888.445365	-0.0057041	-2.5396E-06	-0.077504	-3.4507E-05	-0.083208	-3.7047E-05	445.2298214472436	28.688	0.70859	28.688	28.339	29.047	0					32	13	3	0	0	0	0.77651	1	8866	8866		34.102	10.954	1	10257000			61361	13760	44779	45131	59783	59783					-0.0033194145086099525
VTWADGTTN	9	Unmodified	_VTWADGTTN_					0	0	0		nc|ENSG00000197530|Q96AX9-8|MIB2;nc|ENSG00000197530|Q96AX9-6|MIB2;nc|ENSG00000197530|Q96AX9-3|MIB2;ENSG00000197530|ENST00000355826|MIB2;nc|ENSG00000197530|Q96AX9-9|MIB2;ENST00000511502.5_1_1:1550926-1563560:+|nuORF;ENST00000507229.5_1_1:1551767-1563881:+|nuORF;nc|ENSG00000197530|Q96AX9-7|MIB2;nc|ENSG00000197530|Q96AX9-5|MIB2;ENST00000467597.1_1_1:1560168-1561120:+|nuORF	nc|ENSG00000197530|Q96AX9-8|MIB2	nc|ENSG00000197530|Q96AX9-8|MIB2	MULTI-MSMS	A375_MHC_IP_R1	1	483.6457824707031	2	482.722164	963.429775	-0.59616	-0.00028778	-0.15023	-7.2521E-05	-0.74639	-0.0003603	482.72203789562025	68.353	0.81396	68.353	67.955	68.769	0					38	15	3	0	0	0	0.67332	1	24813	24813		9.3831	9.3831	1	8502800			61362	9166	44780	45132	59784	59784					-0.05340272758564879
VTWAPRRPQQS	11	Unmodified	_VTWAPRRPQQS_					0	0	0		ENST00000479501.5_1_20:61950534-61961007:+|nuORF	ENST00000479501.5_1_20:61950534-61961007:+|nuORF	ENST00000479501.5_1_20:61950534-61961007:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	442.6534118652344	3	442.573949	1324.70002	-0.1597	-7.0677E-05	-1.0276	-0.0004548	-1.1873	-0.00052548	442.90777817872043	37.02	0.4033	37.02	36.795	37.198	0					11	7	2	0	0	0	0.7328	1	12351	12351		6.2344	1.5184	1	1186600			61363	12476	44781	45133	59785	59785					0.050655002975190655
VTWKCKNF	8	Unmodified	_VTWKCKNF_					0	0	0			REV__chr6:10410335-10424758|315|17.36|0.04|8.81|-|1|TFAP2A,None|1	REV__chr6:10410335-10424758|315|17.36|0.04|8.81|-|1|TFAP2A,None|1	MULTI-SECPEP	A375_MHC_IP_R2	2	513.1321411132812	2	513.265487	1024.51642	-0.74497	-0.00038237	0.67547	0.0003467	-0.069496	-3.567E-05	513.2660599627765	76.161	0.30322	76.902	76.792	77.095	0.74052					7	5	2	0	0	0	0.97144	1	28873	28873		14.582	9.351	1	1235100	+		61364	15762	44782	45134	59786	59786					0.0051443526228922565
VTWLTRIVRKQ	11	Unmodified	_VTWLTRIVRKQ_					0	0	0			REV__ENSG00000226784|ENST00000458128|PGAM4	REV__ENSG00000226784|ENST00000458128|PGAM4	MSMS	A375_MHC_IP_R1	1	700.2374267578125	2	700.430253	1398.84595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.54	0.99999	127.54	127.04	128.04	0								0	0	0	0.16302	1	48906	48906		2.9952	0.26005	1		+		61365	22726	44783	45135	59787	59787					0.16248382813523676
VTWQHCYID	9	Unmodified	_VTWQHCYID_					0	0	0		nc|ENSG00000172987|Q8WWQ2-4|HPSE2;nc|ENSG00000172987|Q8WWQ2-3|HPSE2;nc|ENSG00000172987|Q8WWQ2-2|HPSE2;ENSG00000172987|ENST00000370552|HPSE2	nc|ENSG00000172987|Q8WWQ2-4|HPSE2	nc|ENSG00000172987|Q8WWQ2-4|HPSE2	MULTI-MSMS	A375_MHC_IP_R2	2	583.1818237304688	2	582.760766	1163.50698	-0.59918	-0.00034918	1.4634	0.00085281	0.86422	0.00050363	583.2636522701558	34.838	0.45314	35.602	35.425	35.878	0.76338					10	8	2	0	0	0	0.61998	1	12618	12618		13.906	0.29118	1	1655400			61366	7756	44784	45136	59788	59788					-0.0682337781388469
VTWQNQHL	8	Unmodified	_VTWQNQHL_					0	0	0			REV__KLHL28|p.P501L|1|0.15|ENSG00000179454|chr14:44931383-44931383|G/A|missense_variant	REV__KLHL28|p.P501L|1|0.15|ENSG00000179454|chr14:44931383-44931383|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	513.6610717773438	2	513.261791	1024.50903	-0.80108	-0.00041117	-1.2867	-0.00066042	-2.0878	-0.0010716	513.2601576351914	39.749	1.0151	40.523	40.118	41.133	0.77451					38	19	3	0	0	0	0.54285	1	14712	14712		46.921	0	1	3128600	+		61367	26859	44785	45137	59789	59789					-0.0022458101377651474
VTWRQGRCR	9	Unmodified	_VTWRQGRCR_					0	0	0			REV__nc|ENSG00000241370|Q9H633-4|RPP21	REV__nc|ENSG00000241370|Q9H633-4|RPP21	MULTI-SECPEP	A375_MHC_IP_R2	2	580.6851806640625	2	581.306541	1160.59853	-0.55132	-0.00032049	3.2535	0.0018913	2.7022	0.0015708	581.3078989936587	38.959	0.40887	39.734	39.556	39.965	0.77451					11	7	2	0	0	0	0.69507	1	14394	14394		5.7319	0	1	1409500	+		61368	27521	44786	45138	59790	59790					0.024653503939589427
VTWWEGGF	8	Unmodified	_VTWWEGGF_					0	0	0			REV__ENST00000322177.5_1_15:75247948-75248191:-|nuORF	REV__ENST00000322177.5_1_15:75247948-75248191:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	491.67919921875	2	491.226885	980.439217	-0.42336	-0.00020797	-0.46881	-0.00023029	-0.89217	-0.00043826	491.2269643870327	101.27	0.35631	102.03	101.8	102.16	0.76428					12	6	3	0	0	0	0.7479	1	38378	38378		20.871	3.9289	1	1450400	+		61369	23577	44787	45139	59791	59791					-0.05178459682383618
VTWWEGGF	8	Unmodified	_VTWWEGGF_					0	0	0			REV__ENST00000322177.5_1_15:75247948-75248191:-|nuORF	REV__ENST00000322177.5_1_15:75247948-75248191:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	491.226885	980.439217	-0.42336	-0.00020797	-0.46881	-0.00023029	-0.89217	-0.00043826	491.2269643870327	101.27	0.35631	102.03	101.8	102.16	0.76428	-0.040489	-0.00014076	NaN	20.871	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1450400	+		61370	23577	44787	45139							-0.05178459682383618
VTWYMEAVFPG	11	Unmodified	_VTWYMEAVFPG_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3;ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	MULTI-MSMS	A375_MHC_IP_R1	1	434.2736511230469	3	433.874125	1298.60055	-0.1641	-7.1197E-05	-0.81474	-0.0003535	-0.97884	-0.00042469	433.87375558586444	50.616	0.70915	50.616	50.459	51.168	0					18	13	2	0	0	0	0.73332	1	17976	17976		2.6312	0.84881	1	2347600			61371	7244	44788	45140	59792	59792					-0.03681078431463902
VTYARLHSF	9	Unmodified	_VTYARLHSF_					0	0	0		LILRB4|p.D409N|1|0.38|ENSG00000186818|chr19:54667897-54667897|G/A|missense_variant;ENSG00000186818|ENST00000695418|LILRB4	LILRB4|p.D409N|1|0.38|ENSG00000186818|chr19:54667897-54667897|G/A|missense_variant	LILRB4|p.D409N|1|0.38|ENSG00000186818|chr19:54667897-54667897|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	547.6928100585938	2	547.293091	1092.57163	-0.12427	-6.8014E-05	-0.38332	-0.00020979	-0.5076	-0.0002778	547.2928641626044	48.603	0.60741	48.603	48.274	48.882	0					27	11	3	0	0	0	0.20451	1	17157	17157		49.554	5.7819	1	11756000			61372	8780	44789	45141	59793	59793					0.029045650544276214
VTYCEASTI	9	Unmodified	_VTYCEASTI_					0	0	0			REV__VPS13B|p.A1194Ifs*14|1|0.16|ENSG00000132549|chr8:99467545-99467557|CTTGCTACGGGAC/-|frameshift_variant;REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MULTI-SECPEP	A375_MHC_IP_R1	1	494.128662109375	2	493.7286	985.442648	-0.38449	-0.00018984	0.31653	0.00015628	-0.067961	-3.3554E-05	493.72871586686523	91.579	0.70705	91.579	91.249	91.956	0					23	13	2	0	0	0	0.62767	1	33632	33632		16.942	0	1	4527700	+		61373	18661;28983	44790	45142	59794	59794					-0.05065577690675127
VTYCGLUSY	9	Unmodified	_VTYCGLUSY_					0	0	0		ENSG00000186838|ENST00000335426|SELENOV	ENSG00000186838|ENST00000335426|SELENOV	ENSG00000186838|ENST00000335426|SELENOV	MULTI-MSMS	A375_MHC_IP_R1	1	528.1376953125	2	528.684122	1055.35369	-0.71015	-0.00037544	-0.28806	-0.00015229	-0.99821	-0.00052774	528.6839143893619	53.094	0.45425	53.094	52.796	53.25	0					13	8	2	0	0	0	0.55818	1	18907	18907		0	0	0	1203600			61374	8782	44791	45143	59795	59795					-0.17177236485281355
VTYCGLUSY	9	Carbamidomethyl (C)	_VTYCGLUSY_					0	1	0		ENSG00000186838|ENST00000335426|SELENOV	ENSG00000186838|ENST00000335426|SELENOV	ENSG00000186838|ENST00000335426|SELENOV	MSMS	A375_MHC_IP_R1	1	557.2427978515625	2	557.194853	1112.37515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.27	1	69.27	68.77	69.77	0								0	0	0	0.15283	1	25134	25134		0	0	0				61375	8782	44791	45144	59796	59796					-0.1765385145658911
VTYDPMDKI	9	Unmodified	_VTYDPMDKI_					0	0	0		KIF9|p.E389K|1|0.45|ENSG00000088727|chr3:47247441-47247441|C/T|missense_variant	KIF9|p.E389K|1|0.45|ENSG00000088727|chr3:47247441-47247441|C/T|missense_variant	KIF9|p.E389K|1|0.45|ENSG00000088727|chr3:47247441-47247441|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	540.8793334960938	2	541.26535	1080.51615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.12	1	145.14	144.64	145.64	0.021408								0	0	0	0.15486	1	56667	56667		4.756	0	1				61376	14219	44792	45145	59797	59797					-0.02089029248213592
VTYEQLKKLD	10	Unmodified	_VTYEQLKKLD_					0	0	0		ENSG00000174032|ENST00000519676|SLC25A30;nc|ENSG00000174032|Q5SVS4-2|SLC25A30	ENSG00000174032|ENST00000519676|SLC25A30	ENSG00000174032|ENST00000519676|SLC25A30	MSMS	A375_MHC_IP_R2	2	618.848876953125	2	618.845353	1235.67615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.26	1	114.97	114.47	115.47	0.70985								0	0	0	0.15435	1	43085	43085		6.7232	0	1				61377	7851	44793	45146	59798	59798					0.06774222020476373
VTYFTIKW	8	Unmodified	_VTYFTIKW_					0	0	0		nc|ENSG00000138138|Q8NBU5-2|ATAD1;ENSG00000138138|ENST00000680024|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	MSMS	A375_MHC_IP_R2	2	353.2535095214844	3	353.195416	1056.56442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.735	1	52.487	51.987	52.987	0.75225								0	0	0	0.16876	1	19478	19478		18.146	2.8979	1				61378	4964	44794	45147	59799	59799					0.03839832454013958
VTYHLTKEL	9	Unmodified	_VTYHLTKEL_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF	ENSG00000134910|ENST00000392708|STT3A	ENSG00000134910|ENST00000392708|STT3A	MULTI-SECPEP	A375_MHC_IP_R1	1	552.72705078125	2	552.308406	1102.60226	-0.43583	-0.00024071	-3.4565	-0.001909	-3.8923	-0.0021498	552.3079519732024	79.246	0.25618	79.246	79.111	79.367	0					5	4	2	0	0	0	0.76827	1	28956	28956		3.5965	0.31518	1	393830			61379	4626	44795	45148	59800	59800					0.055062986488110255
VTYHPIEV	8	Unmodified	_VTYHPIEV_					0	0	0		HYDIN|p.T4596I|1|0.14|ENSG00000157423|chr16:70832960-70832960|G/A|missense_variant	HYDIN|p.T4596I|1|0.14|ENSG00000157423|chr16:70832960-70832960|G/A|missense_variant	HYDIN|p.T4596I|1|0.14|ENSG00000157423|chr16:70832960-70832960|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	478.69451904296875	2	479.255643	956.496732	-0.57998	-0.00027796	0.47214	0.00022628	-0.10784	-5.1682E-05	479.2557556125041	74.335	0.60863	75.073	74.757	75.365	0.73752					15	11	2	0	0	0	0.94479	1	28186	28186		13.508	13.508	1	1431000			61380	14144	44796	45149	59801	59801					0.016743825231969822
VTYIMTLN	8	Unmodified	_VTYIMTLN_					0	0	0			REV__CAPN7|p.P271L|1|0.38|ENSG00000131375|chr3:15227925-15227925|C/T|missense_variant	REV__CAPN7|p.P271L|1|0.38|ENSG00000131375|chr3:15227925-15227925|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	477.64923095703125	2	477.751879	953.489204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.683	1	99.443	98.943	99.943	0.75977								0	0	0	0.16876	1	37435	37435		32.117	8.9685	1		+		61381	15573	44797	45150	59802	59802					0.010599069312547726
VTYITMKIF	9	Unmodified	_VTYITMKIF_					0	0	0		ADORA3|p.E19K|1|0.56|ENSG00000282608|chr1:111503300-111503300|C/T|missense_variant	ADORA3|p.E19K|1|0.56|ENSG00000282608|chr1:111503300-111503300|C/T|missense_variant	ADORA3|p.E19K|1|0.56|ENSG00000282608|chr1:111503300-111503300|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	557.67822265625	2	558.312103	1114.60965	-0.7906	-0.0004414	-1.3222	-0.00073818	-2.1128	-0.0011796	558.312068406538	66.852	0.60812	67.588	67.393	68.001	0.73631					15	11	2	0	0	0	0.60012	1	25460	25460		12.532	0	1	1033300			61382	79	44798	45151	59803	59803					0.056933149248834525
VTYKFYRWFDF	11	Unmodified	_VTYKFYRWFDF_					0	0	0			REV__nc|ENSG00000146842|Q96SK2-4|TMEM209	REV__nc|ENSG00000146842|Q96SK2-4|TMEM209	MULTI-SECPEP	A375_MHC_IP_R2	2	524.2213745117188	3	524.594238	1570.76089	-0.69156	-0.00036279	-0.91782	-0.00048148	-1.6094	-0.00084427	524.5937758647913	54.766	0.25533	55.517	55.32	55.575	0.75075					6	4	2	0	0	0	1.0004	1	20649	20649		1.2148	0	1	782410	+		61383	19553	44799	45152	59804	59804					-0.0016640744292999443
VTYKNVPNW	9	Unmodified	_VTYKNVPNW_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	A375_MHC_IP_R1	1	561.1925048828125	2	560.792924	1119.57129	-0.46096	-0.0002585	0.17217	9.6551E-05	-0.28879	-0.00016195	560.7928538739892	53.481	0.71066	53.481	53.099	53.809	0					36	13	4	0	0	0	0.001114	2	19037	19037;19132		152.89	122.25	1	12895000			61384	4395	44800	45153	59805;59806	59805					0.01629145334572968
VTYKNVPNW	9	Unmodified	_VTYKNVPNW_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-SECPEP	A375_MHC_IP_R1	1	561.1939086914062	2	560.792924	1119.57129	-0.54279	-0.00030439	0.80879	0.00045356	0.266	0.00014917	560.7935227988162	58.839	0.40694	58.839	58.685	59.092	0					13	7	2	0	0	0	0.20645	1	21145	21145		56.177	25.541	1	3137800			61385	4395	44800	45153	59807	59807					0.01629145334572968
VTYKNVPNW	9	Unmodified	_VTYKNVPNW_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	A375_MHC_IP_R2	2	561.1914672851562	2	560.792924	1119.57129	-1.1387	-0.00063858	0.25032	0.00014038	-0.8884	-0.00049821	560.7929890116226	52.812	0.60888	53.563	53.233	53.842	0.75105					18	11	2	0	0	0	0.0014143	1	19889	19889		149.91	111.94	1	13975000			61386	4395	44800	45153	59808	59808					0.01629145334572968
VTYKNVPNW	9	Unmodified	_VTYKNVPNW_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	A375_MHC_IP_R2	2	561.192626953125	2	560.792924	1119.57129	-0.90357	-0.00050671	-0.026713	-1.4981E-05	-0.93028	-0.0005217	560.7930673078556	58.091	0.45477	58.84	58.629	59.083	0.74895					14	8	2	0	0	0	0.0096896	1	22001	22001		110.67	81.593	1	2873600			61387	4395	44800	45153	59809	59809					0.01629145334572968
VTYLDKIKKF	10	Unmodified	_VTYLDKIKKF_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MSMS	A375_MHC_IP_R1	1	628.0758056640625	2	627.876456	1253.73836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.546	1	98.546	98.046	99.046	0								0	0	0	0.15435	1	36206	36206		6.7232	0	1				61388	1262	44801	45154	59810	59810					0.12163993159447273
VTYLDKIKKFI	11	Unmodified	_VTYLDKIKKFI_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MSMS	A375_MHC_IP_R1	1	684.6027221679688	2	684.418488	1366.82242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.911	1	95.911	95.411	96.411	0								0	0	0	0.16334	1	35251	35251		1.3295	0	1				61389	1262	44802	45155	59811	59811					0.15368524256359706
VTYNHDGSYS	10	Unmodified	_VTYNHDGSYS_					0	0	0		ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	MULTI-MSMS	A375_MHC_IP_R2	2	572.1403198242188	2	571.741085	1141.46762	-0.10212	-5.8389E-05	-0.7858	-0.00044927	-0.88792	-0.00050766	571.7405177295478	85.88	0.60912	86.613	86.186	86.795	0.73325					30	11	3	0	0	0	0.71361	1	32592	32592		6.2058	0.9089	1	8327700			61390	1665	44803	45156	59812	59812					-0.09745806563728365
VTYNQKLQ	8	Unmodified	_VTYNQKLQ_					0	0	0		ENSG00000169084|ENST00000334651|DHRSX	ENSG00000169084|ENST00000334651|DHRSX	ENSG00000169084|ENST00000334651|DHRSX	MULTI-MSMS	A375_MHC_IP_R2	2	498.7211608886719	2	497.271824	992.529095	-0.87621	-0.00043571	-0.22765	-0.00011321	-1.1039	-0.00054892	497.27164373636464	38.45	0.71332	39.225	38.843	39.556	0.77451					43	13	5	0	0	0	0.74466	1	14117	14117		21.747	1.293	1	46980000			61391	7379	44804	45157	59813	59813					0.03253169926199462
VTYPENGRTF	10	Unmodified	_VTYPENGRTF_					0	0	0		IL1RAP|p.H224Y|1|0.48|ENSG00000196083|chr3:190620407-190620407|C/T|missense_variant;nc|ENSG00000196083|Q9NPH3-3|IL1RAP;nc|ENSG00000196083|Q9NPH3-2|IL1RAP;ENSG00000196083|ENST00000447382|IL1RAP;nc|ENSG00000196083|Q9NPH3-5|IL1RAP	IL1RAP|p.H224Y|1|0.48|ENSG00000196083|chr3:190620407-190620407|C/T|missense_variant	IL1RAP|p.H224Y|1|0.48|ENSG00000196083|chr3:190620407-190620407|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	592.690673828125	2	592.290745	1182.56694	-0.54296	-0.00032159	0.47497	0.00028132	-0.067982	-4.0265E-05	592.2908771581776	39.601	0.35278	39.601	39.391	39.744	0					11	6	2	0	0	0	0.81606	1	13574	13574		38.615	38.615	1	4239300			61392	8990	44805	45158	59814	59814					-0.017043638790028126
VTYPENGRTF	10	Unmodified	_VTYPENGRTF_					0	0	0		IL1RAP|p.H224Y|1|0.48|ENSG00000196083|chr3:190620407-190620407|C/T|missense_variant;nc|ENSG00000196083|Q9NPH3-3|IL1RAP;nc|ENSG00000196083|Q9NPH3-2|IL1RAP;ENSG00000196083|ENST00000447382|IL1RAP;nc|ENSG00000196083|Q9NPH3-5|IL1RAP	IL1RAP|p.H224Y|1|0.48|ENSG00000196083|chr3:190620407-190620407|C/T|missense_variant	IL1RAP|p.H224Y|1|0.48|ENSG00000196083|chr3:190620407-190620407|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	592.6908569335938	2	592.290745	1182.56694	-0.79732	-0.00047224	0.58342	0.00034556	-0.21389	-0.00012669	592.290877007775	38.959	0.40941	39.734	39.504	39.914	0.77451					19	7	3	0	0	0	0.81606	1	14383	14383		38.615	38.615	1	4846800			61393	8990	44805	45158	59815	59815					-0.017043638790028126
VTYQTYNLY	9	Unmodified	_VTYQTYNLY_					0	0	0			REV__ENSG00000146433|ENST00000684151|TMEM181	REV__ENSG00000146433|ENST00000684151|TMEM181	MULTI-MSMS	A375_MHC_IP_R1	1	583.1820678710938	2	582.782222	1163.54989	-0.054812	-3.1943E-05	-0.63926	-0.00037255	-0.69407	-0.00040449	582.782042970724	35.409	0.66278	35.409	35.167	35.83	0					24	12	3	0	0	0	0.38603	1	11784	11784		25.399	0	1	2082500	+		61394	19537	44806	45159	59816	59816					-0.025342844847955348
VTYQTYNLY	9	Unmodified	_VTYQTYNLY_					0	0	0			REV__ENSG00000146433|ENST00000684151|TMEM181	REV__ENSG00000146433|ENST00000684151|TMEM181	MULTI-MSMS	A375_MHC_IP_R2	2	583.1810302734375	2	582.782222	1163.54989	-0.36371	-0.00021197	-0.19969	-0.00011638	-0.5634	-0.00032834	582.7820459592698	44.312	2.2284	45.081	44.228	46.456	0.7691					118	43	3	0	0	0	0.38603	1	16835	16835		25.399	1.3787	1	8457100	+		61395	19537	44806	45159	59817	59817					-0.025342844847955348
VTYQTYNLY	9	Unmodified	_VTYQTYNLY_					0	0	0			REV__ENSG00000146433|ENST00000684151|TMEM181	REV__ENSG00000146433|ENST00000684151|TMEM181	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	582.782222	1163.54989	-0.054812	-3.1943E-05	-0.63926	-0.00037255	-0.69407	-0.00040449	582.782042970724	35.409	0.66278	35.409	35.167	35.83	0	-0.047481	-0.00019165	NaN	25.399	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2082500	+		61396	19537	44806	45159							-0.025342844847955348
VTYRPPPP	8	Unmodified	_VTYRPPPP_					0	0	0			REV__nc|ENSG00000168924|O95202-3|LETM1	REV__nc|ENSG00000168924|O95202-3|LETM1	MULTI-SECPEP	A375_MHC_IP_R1	1	464.14044189453125	2	463.758352	925.502152	-0.22609	-0.00010485	0.48171	0.0002234	0.25562	0.00011855	463.7587399852552	60.282	0.45808	60.282	60.006	60.464	0					12	8	2	0	0	0	0.94587	1	21664	21664		10.074	0	1	811070	+		61397	20896	44807	45160	59818	59818					0.036421061056557846
VTYTGSYDR	9	Unmodified	_VTYTGSYDR_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MULTI-MSMS	A375_MHC_IP_R2	2	532.1998901367188	2	531.248546	1060.48254	-1.0366	-0.00055071	-0.065049	-3.4557E-05	-1.1017	-0.00058527	531.2484225525179	24.745	0.81502	25.389	25.161	25.976	0.64368					29	15	3	0	0	0	0.43185	1	8103	8103		23.148	6.2061	1	25746000	+		61398	19731	44808	45161	59819	59819					-0.045283146957672216
VTYTLSWTY	9	Unmodified	_VTYTLSWTY_					0	0	0			REV__nc|ENSG00000111783|Q33E94-3|RFX4	REV__nc|ENSG00000111783|Q33E94-3|RFX4	MULTI-MSMS	A375_MHC_IP_R2	2	567.6792602539062	2	567.279315	1132.54408	-0.81547	-0.0004626	0.278	0.0001577	-0.53748	-0.0003049	567.2795758256585	25.255	0.25731	25.898	25.719	25.976	0.64368					7	4	2	0	0	0	0.60101	1	8441	8441		14.838	4.0143	1	2562200	+		61399	17692	44809	45162	59820	59820					-0.016893829964601537
VTYVPVTTF	9	Unmodified	_VTYVPVTTF_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31;ENST00000431088.1_1_2:223591487-223591550:+|nuORF	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-MSMS	A375_MHC_IP_R2	2	1026.478271484375	1	1026.55062	1025.54335	0.036619	3.7592E-05	-0.066041	-6.7794E-05	-0.029422	-3.0203E-05	1026.5503825064607	102.69	0.61017	103.45	103.07	103.68	0.76428					27	11	3	0	0	0	0.0019764	1	38875	38875		144.35	66.366	1	13723000			61400	1508	44810	45163	59821	59821					0.031598223544506254
VTYVPVTTF	9	Unmodified	_VTYVPVTTF_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31;ENST00000431088.1_1_2:223591487-223591550:+|nuORF	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-MSMS	A375_MHC_IP_R2	2	514.1787109375	2	513.778951	1025.54335	-0.75756	-0.00038922	-0.76626	-0.00039369	-1.5238	-0.00078291	513.7788732978279	102.69	0.50893	103.46	103.12	103.63	0.76428					12	9	2	0	0	0	0.2002	1	38929	38929		37.974	21.032	1	1934100			61401	1508	44810	45163	59822	59822					0.031598223544506254
VTYVPVTTF	9	Unmodified	_VTYVPVTTF_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31;ENST00000431088.1_1_2:223591487-223591550:+|nuORF	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-MATCH	A375_MHC_IP_R1	1		1	1026.55062	1025.54335	0.20957	0.00021514	0.34342	0.00035254	0.55299	0.00056767	1026.5508582367656	103.45	0.55943	103.45	103.12	103.68	0	-0.0023545	0.00020819	NaN	144.35	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11358000			61402	1508	44810	45163							0.031598223544506254
VTYYGPSG	8	Unmodified	_VTYYGPSG_					0	0	0		ENST00000481337.5_1_3:105238990-105260608:+|nuORF;nc|ENSG00000170017|Q13740-4|ALCAM;nc|ENSG00000170017|Q13740-2|ALCAM;ENSG00000170017|ENST00000306107|ALCAM	ENST00000481337.5_1_3:105238990-105260608:+|nuORF	ENST00000481337.5_1_3:105238990-105260608:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	422.59893798828125	2	422.197793	842.381034	0.090607	3.8254E-05	0.96602	0.00040785	1.0566	0.00044611	422.198691587886	99.38	1.2719	100.14	99.808	101.08	0.75977					44	24	3	0	0	0	0.75322	1	37776	37776		19.439	0	1	10641000			61403	7463	44811	45164	59823	59823					-0.046461413276574604
VTYYKRPV	8	Unmodified	_VTYYKRPV_					0	0	0		ENSG00000125966|ENST00000246186|MMP24	ENSG00000125966|ENST00000246186|MMP24	ENSG00000125966|ENST00000246186|MMP24	MULTI-SECPEP	A375_MHC_IP_R2	2	512.6497802734375	2	513.292559	1024.57057	-0.81789	-0.00041982	0.50293	0.00025815	-0.31496	-0.00016167	513.2928126571064	32.741	0.20216	33.478	33.367	33.569	0.73691					5	3	2	0	0	0	0.972	1	11704	11704		5.7604	0	1	1395100			61404	4013	44812	45165	59824	59824					0.05926350685513171
VTYYVLEEW	9	Unmodified	_VTYYVLEEW_					0	0	0			REV__ENST00000415967.2_1_7:56059545-56066762:+|nuORF	REV__ENST00000415967.2_1_7:56059545-56066762:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	401.9556884765625	3	401.197374	1200.57029	-0.051871	-2.0811E-05	-0.54182	-0.00021738	-0.59369	-0.00023819	401.1971383277537	21.361	1.2188	21.361	21.098	22.317	0					31	23	2	0	0	0	0.76187	1	5612	5612		4.5289	2.2761	1	1348800	+		61405	19548	44813	45166	59825	59825					-0.021971138249909927
VVADPCSMD	9	Unmodified	_VVADPCSMD_					0	0	0		ENST00000393909.6_1_2:75883338-75883386:+|nuORF	ENST00000393909.6_1_2:75883338-75883386:+|nuORF	ENST00000393909.6_1_2:75883338-75883386:+|nuORF	MSMS	A375_MHC_IP_R1	1	468.6105041503906	2	468.693703	935.372854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.328	1	83.328	82.828	83.828	0								0	0	0	0.15486	1	30491	30491		6.7232	0.36906	1				61406	11443	44814	45167	59826	59826					-0.09741779630951442
VVAGDRPR	8	Unmodified	_VVAGDRPR_					0	0	0			REV__ENSG00000116329|ENST00000234961|OPRD1	REV__ENSG00000116329|ENST00000234961|OPRD1	MULTI-MSMS	A375_MHC_IP_R2	2	435.2820129394531	2	435.251226	868.487899	-0.23922	-0.00010412	0.039225	1.7073E-05	-0.19999	-8.7047E-05	435.2511563360184	104.48	6.2587	105.24	102.77	109.03	0.76308					258	122	3	0	0	0	0.77797	1	38900	38900		2.3027	0	1	16931000	+		61407	17954	44815	45168	59827	59827					0.04839453677379879
VVAGHAIG	8	Unmodified	_VVAGHAIG_					0	0	0			REV__ENSG00000122482|ENST00000337393|ZNF644	REV__ENSG00000122482|ENST00000337393|ZNF644	MULTI-MSMS	A375_MHC_IP_R1	1	724.327880859375	1	723.4148	722.407523	-0.92136	-0.00066653	1.3067	0.00094531	0.38537	0.00027878	723.4155487000135	143.37	0.64209	143.37	143.24	143.89	0					25	12	3	0	0	0	0.77839	1	55011	55011		0.79363	0	1	8870700	+		61408	18208	44816	45169	59828	59828					0.03521592354343284
VVAGVANALAH	11	Unmodified	_VVAGVANALAH_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;CON__P02070	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-SECPEP	A375_MHC_IP_R2	2	511.6923828125	2	511.293091	1020.57163	-0.68593	-0.00035071	-0.55258	-0.00028253	-1.2385	-0.00063324	511.29273848740206	46.038	0.45504	46.804	46.603	47.058	0.76519					13	8	2	0	0	0	0.14547	1	17270	17270		56.177	34.43	1	2758900			61409	9826	44817	45170	59829	59829					0.06216565054410239
VVAKISLA	8	Unmodified	_VVAKISLA_					0	0	0			REV__tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	REV__tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	401.1654052734375	2	400.765646	799.516739	-0.41536	-0.00016646	0.28048	0.00011241	-0.13488	-5.4054E-05	400.76568823559677	57.193	0.71436	57.943	57.662	58.376	0.75015					30	13	3	0	0	0	0.64636	1	21584	21584		42.095	2.1372	1	17227000	+		61410	28891	44818	45171	59830	59830					0.10896178253801736
VVAPLLRKV	9	Unmodified	_VVAPLLRKV_					0	0	0		nc|ENSG00000141933|Q6ZTW0-2|TPGS1;ENSG00000141933|ENST00000359315|TPGS1	nc|ENSG00000141933|Q6ZTW0-2|TPGS1	nc|ENSG00000141933|Q6ZTW0-2|TPGS1	MULTI-SECPEP	A375_MHC_IP_R2	2	498.2419738769531	2	497.84222	993.669886	-0.37058	-0.00018449	-0.098651	-4.9113E-05	-0.46923	-0.0002336	497.8420725448455	46.523	0.50879	47.288	47.058	47.567	0.76519					12	9	2	0	0	0	0.60917	1	17438	17438		25.399	8.457	1	2130200			61411	5277	44819	45172	59831	59831					0.17279793370266816
VVARVLIPK	9	Unmodified	_VVARVLIPK_					0	0	0			REV__nc|ENSG00000178950|O14976-2|GAK	REV__nc|ENSG00000178950|O14976-2|GAK	MULTI-SECPEP	A375_MHC_IP_R1	1	498.2419128417969	2	497.84222	993.669886	-0.33251	-0.00016554	0.39282	0.00019556	0.060307	3.0023E-05	497.8425257936182	47.526	0.35331	47.526	47.315	47.668	0					11	6	2	0	0	0	0.75466	1	16767	16767		12.532	0	1	1639500	+		61412	21527	44820	45173	59832	59832					0.17279793370278185
VVASAVAV	8	Unmodified	_VVASAVAV_					0	0	0			REV__nc|ENSG00000124615|Q9NZB8-7|MOCS1	REV__nc|ENSG00000124615|Q9NZB8-7|MOCS1	MULTI-MSMS	A375_MHC_IP_R1	1	715.1934814453125	1	715.434867	714.42759	-0.5868	-0.00041981	0.47906	0.00034273	-0.10774	-7.7081E-05	715.4351202923768	73.46	1.6223	73.46	73.031	74.653	0					67	31	4	0	0	0	0.16304	1	26637	26637		82.939	12.075	1	112950000	+		61413	18316	44821	45174	59833	59833					0.0589534329427579
VVASAVAV	8	Unmodified	_VVASAVAV_					0	0	0			REV__nc|ENSG00000124615|Q9NZB8-7|MOCS1	REV__nc|ENSG00000124615|Q9NZB8-7|MOCS1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	715.434867	714.42759	-0.5868	-0.00041981	0.47906	0.00034273	-0.10774	-7.7081E-05	715.4351202923768	73.46	1.6223	73.46	73.031	74.653	0	0.078742	0.00010833	NaN	82.939	67	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112950000	+		61414	18316	44821	45174							0.0589534329427579
VVASAVAV	8	Unmodified	_VVASAVAV_					0	0	0			REV__nc|ENSG00000124615|Q9NZB8-7|MOCS1	REV__nc|ENSG00000124615|Q9NZB8-7|MOCS1	MULTI-MATCH	A375_MHC_IP_R2	2		1	715.434867	714.42759	-0.88267	-0.00063149	0.19042	0.00013623	-0.69225	-0.00049526	715.4348808834934	72.567	1.4724	73.302	72.821	74.294	0.73541	-0.078742	-9.817E-05	NaN	82.939	66	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106990000	+		61415	18316	44821	45174							0.0589534329427579
VVASNIMEV	9	Oxidation (M)	_VVASNIM(Oxidation (M))EV_		VVASNIM(1)EV		VVASNIM(56)EV	0	0	1		nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	MULTI-MSMS	A375_MHC_IP_R1	1	489.6520690917969	2	489.252243	976.489932	-0.31069	-0.00015201	0.24726	0.00012097	-0.063437	-3.1037E-05	489.2521510871886	50.517	0.50862	50.517	50.305	50.814	0					16	9	2	0	0	0	0.070818	1	17924	17924		56.177	12.319	1	1845600			61416	7518	44822	45175	59834	59834		381			0.00074701580308556
VVATWWGI	8	Unmodified	_VVATWWGI_					0	0	0			REV__ENSG00000176018|ENST00000315948|LYSMD3	REV__ENSG00000176018|ENST00000315948|LYSMD3	MSMS	A375_MHC_IP_R1	1	466.1955871582031	2	466.255446	930.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.87	1	134.87	134.37	135.37	0								0	0	0	0.16876	1	52009	52009		5.7604	0	1		+		61417	21381	44823	45176	59835	59835					0.028310075939771195
VVCFPPCP	8	Unmodified	_VVCFPPCP_					0	0	0			REV__ENST00000490860.1_1_21:40764845-40768862:+|nuORF	REV__ENST00000490860.1_1_21:40764845-40768862:+|nuORF	MSMS	A375_MHC_IP_R2	2	431.2881774902344	2	431.20351	860.392467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.36	1	132.55	132.05	133.05	0.18953								0	0	0	0.16876	1	52068	52068		0.79363	0	1		+		61418	25391	44824	45177	59836	59836					-0.04331358829540477
VVCFVPLLFI	10	Unmodified	_VVCFVPLLFI_					0	0	0		ENSG00000196171|ENST00000359610|OR6K2;OR6K2|p.S24F|1|0.3|ENSG00000196171|chr1:158700582-158700582|G/A|missense_variant	ENSG00000196171|ENST00000359610|OR6K2	ENSG00000196171|ENST00000359610|OR6K2	MULTI-MSMS	A375_MHC_IP_R1	1	384.2865905761719	3	383.896201	1148.66677	0.27982	0.00010742	-0.083169	-3.1928E-05	0.19665	7.5494E-05	383.89621478767253	34.076	1.52	34.076	33.698	35.218	0					75	29	5	0	0	0	0.67512	1	11382	11382		15.248	0.29132	1	239410000			61419	9010	44825	45178	59837	59837					0.09838782201245522
VVDAVVTQV	9	Unmodified	_VVDAVVTQV_					0	0	0		ENST00000527435.5_1_11:62529161-62533976:+|nuORF;ENSG00000168002|ENST00000301788|POLR2G;ENST00000526368.1_1_11:62530297-62533976:+|nuORF	ENST00000527435.5_1_11:62529161-62533976:+|nuORF	ENST00000527435.5_1_11:62529161-62533976:+|nuORF	MSMS	A375_MHC_IP_R1	1	465.6683654785156	2	465.26875	928.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.639	1	66.639	66.139	67.139	0								0	0	0	0.03645	1	24136	24136		61.357	21.4	1				61420	7251	44826	45179	59838	59838					0.05582651694658125
VVDAVVTQV	9	Unmodified	_VVDAVVTQV_					0	0	0		ENST00000527435.5_1_11:62529161-62533976:+|nuORF;ENSG00000168002|ENST00000301788|POLR2G;ENST00000526368.1_1_11:62530297-62533976:+|nuORF	ENST00000527435.5_1_11:62529161-62533976:+|nuORF	ENST00000527435.5_1_11:62529161-62533976:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	465.6683349609375	2	465.26875	928.522947	-0.82605	-0.00038434	0.4424	0.00020584	-0.38365	-0.0001785	465.268932097197	65.752	0.71245	66.491	66.018	66.731	0.73812					17	13	2	0	0	0	0.05754	1	24961	24961		61.357	10.502	1	1907200			61421	7251	44826	45179	59839	59839					0.05582651694658125
VVDDWIESY	9	Unmodified	_VVDDWIESY_					0	0	0		nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1;ENST00000462818.1_1_3:136219063-136323180:-|nuORF;ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2;STAG2|p.M197Wfs*28|1|0.58|ENSG00000101972|chrX:124045290-124045290|A/-|frameshift_variant	nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000101972|ENST00000371145|STAG2	ENSG00000101972|ENST00000371145|STAG2	MULTI-MSMS	A375_MHC_IP_R1	1	563.658203125	2	563.258579	1124.50261	-0.40508	-0.00022816	-0.096011	-5.4079E-05	-0.50109	-0.00028224	563.2585847331497	103.85	1.0189	103.85	103.37	104.39	0					45	19	3	0	0	0	0.03063	1	38060	38060		74.423	28.402	1	9755600			61422	2340;3521	44827	45180	59840	59840					-0.05466563755817333
VVDDWIESY	9	Unmodified	_VVDDWIESY_					0	0	0		nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1;ENST00000462818.1_1_3:136219063-136323180:-|nuORF;ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2;STAG2|p.M197Wfs*28|1|0.58|ENSG00000101972|chrX:124045290-124045290|A/-|frameshift_variant	nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000101972|ENST00000371145|STAG2	ENSG00000101972|ENST00000371145|STAG2	MULTI-MSMS	A375_MHC_IP_R2	2	563.6583251953125	2	563.258579	1124.50261	-0.51037	-0.00028747	-0.94828	-0.00053413	-1.4586	-0.0008216	563.258335620354	103.16	1.3728	103.93	103.18	104.55	0.76428					63	26	4	0	0	0	0.022213	1	39016	39016		81.613	50.977	1	9464000			61423	2340;3521	44827	45180	59841	59841					-0.05466563755817333
VVDEDHELIY	10	Unmodified	_VVDEDHELIY_					0	0	0		nc|ENSG00000171310|Q9NPF2-2|CHST11;ENSG00000171310|ENST00000303694|CHST11	nc|ENSG00000171310|Q9NPF2-2|CHST11	nc|ENSG00000171310|Q9NPF2-2|CHST11	MULTI-MSMS	A375_MHC_IP_R1	1	616.6954345703125	2	616.295693	1230.57683	-0.34774	-0.00021431	0.13743	8.4697E-05	-0.21032	-0.00012962	616.2957045269276	59.369	0.76131	59.369	59.041	59.803	0					34	13	4	0	0	0	0.0038543	1	21317	21317		99.799	72.915	1	8148600			61424	7595	44828	45181	59842	59842					-0.02923220664274595
VVDEDHELIY	10	Unmodified	_VVDEDHELIY_					0	0	0		nc|ENSG00000171310|Q9NPF2-2|CHST11;ENSG00000171310|ENST00000303694|CHST11	nc|ENSG00000171310|Q9NPF2-2|CHST11	nc|ENSG00000171310|Q9NPF2-2|CHST11	MULTI-MSMS	A375_MHC_IP_R2	2	616.695068359375	2	616.295693	1230.57683	-0.9742	-0.00060039	0.13581	8.3698E-05	-0.83839	-0.0005167	616.2956856540876	58.637	0.60972	59.386	59.083	59.693	0.74894					33	11	4	0	0	0	0.015059	1	22159	22159		88.954	65.164	1	9137000			61425	7595	44828	45181	59843	59843					-0.02923220664274595
VVDEIFNEY	9	Unmodified	_VVDEIFNEY_					0	0	0		ENSG00000100220|ENST00000216038|RTCB	ENSG00000100220|ENST00000216038|RTCB	ENSG00000100220|ENST00000216038|RTCB	MULTI-MSMS	A375_MHC_IP_R1	1	564.6658935546875	2	564.266404	1126.51826	-0.3228	-0.00018214	0.059551	3.3602E-05	-0.26325	-0.00014854	564.266459453689	97.263	0.80826	97.263	96.883	97.691	0					30	15	3	0	0	0	0.018261	1	35706	35706		85.642	45.684	1	4639500			61426	2137	44829	45182	59844	59844					-0.03994277238757604
VVDEIFNEY	9	Unmodified	_VVDEIFNEY_					0	0	0		ENSG00000100220|ENST00000216038|RTCB	ENSG00000100220|ENST00000216038|RTCB	ENSG00000100220|ENST00000216038|RTCB	MULTI-MSMS	A375_MHC_IP_R2	2	564.666748046875	2	564.266404	1126.51826	-0.58736	-0.00033143	0.22107	0.00012474	-0.36629	-0.00020668	564.2664945622674	96.667	0.80856	97.423	97.013	97.822	0.75586					33	15	3	0	0	0	0.0094788	1	36635	36635		107.19	67.23	1	3975200			61427	2137	44829	45182	59845	59845					-0.03994277238757604
VVDEIFNEY	9	Unmodified	_VVDEIFNEY_					0	0	0		ENSG00000100220|ENST00000216038|RTCB	ENSG00000100220|ENST00000216038|RTCB	ENSG00000100220|ENST00000216038|RTCB	MULTI-MSMS	A375_MHC_IP_R2	2	1127.9249267578125	1	1127.52553	1126.51826	0.035405	3.992E-05	-0.061322	-6.9142E-05	-0.025917	-2.9222E-05	1127.5255068461126	96.588	0.80878	97.343	96.962	97.771	0.75586					33	15	3	0	0	0	0.2415	1	36784	36784		34.932	21.89	1	7762800			61428	2137	44829	45182	59846	59846					-0.03994277238757604
VVDEIFNEY	9	Unmodified	_VVDEIFNEY_					0	0	0		ENSG00000100220|ENST00000216038|RTCB	ENSG00000100220|ENST00000216038|RTCB	ENSG00000100220|ENST00000216038|RTCB	MULTI-MATCH	A375_MHC_IP_R1	1		1	1127.52553	1126.51826	0.14993	0.00016905	0.1142	0.00012876	0.26412	0.00029781	1127.525711938962	97.272	0.80818	97.272	96.833	97.641	0	-0.035683	9.7673E-05	NaN	34.932	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7222000			61429	2137	44829	45182							-0.03994277238757604
VVDERQYIW	9	Unmodified	_VVDERQYIW_					0	0	0		nc|ENSG00000116698|Q92540-4|SMG7;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;ENSG00000116698|ENST00000688051|SMG7	nc|ENSG00000116698|Q92540-4|SMG7	nc|ENSG00000116698|Q92540-4|SMG7	MULTI-SECPEP	A375_MHC_IP_R1	1	604.7072143554688	2	604.308938	1206.60332	-0.25735	-0.00015552	-2.5014	-0.0015116	-2.7587	-0.0016671	604.3072855379274	70.963	0.71692	70.963	70.545	71.262	0					22	13	2	0	0	0	0.20059	1	25775	25775		59.368	35.348	1	3639700			61430	14558	44830	45183	59847	59847					0.008285130177227984
VVDFLYQYWKL	11	Unmodified	_VVDFLYQYWKL_					0	0	0		nc|ENSG00000077684|Q6IE81-3|JADE1;JADE1|p.Q582Pfs*19|1|0.04|ENSG00000077684|chr4:128871477-128871478|-/CACAAATAAAGAA|frameshift_variant;nc|ENSG00000077684|Q6IE81-2|JADE1;ENSG00000077684|ENST00000226319|JADE1	nc|ENSG00000077684|Q6IE81-3|JADE1	nc|ENSG00000077684|Q6IE81-3|JADE1	MSMS	A375_MHC_IP_R2	2	737.8310546875	2	737.39247	1472.77039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.45	1	144.47	143.97	144.97	0.024414								0	0	0	0.16354	1	56422	56422		0.30703	0	1				61431	1660	44831	45184	59848	59848					0.05291360842602444
VVDISQQY	8	Unmodified	_VVDISQQY_					0	0	0		ENSG00000168303|ENST00000306984|MPLKIP	ENSG00000168303|ENST00000306984|MPLKIP	ENSG00000168303|ENST00000306984|MPLKIP	MULTI-MSMS	A375_MHC_IP_R1	1	476.642333984375	2	476.242732	950.470912	-0.35759	-0.0001703	-0.050802	-2.4194E-05	-0.4084	-0.0001945	476.24265252455973	53.835	0.50708	53.835	53.656	54.163	0					14	9	2	0	0	0	0.61116	1	19227	19227		44.407	8.3628	1	2551600			61432	7287	44832	45185	59849	59849					-0.006305117191004683
VVDISQQY	8	Unmodified	_VVDISQQY_					0	0	0		ENSG00000168303|ENST00000306984|MPLKIP	ENSG00000168303|ENST00000306984|MPLKIP	ENSG00000168303|ENST00000306984|MPLKIP	MULTI-SECPEP	A375_MHC_IP_R2	2	476.64215087890625	2	476.242732	950.470912	-1.1262	-0.00053635	0.33626	0.00016014	-0.78994	-0.0003762	476.24283807880056	53.32	0.40858	54.071	53.739	54.147	0.75105					13	7	2	0	0	0	0.51146	1	20089	20089		61.357	23.383	1	2770500			61433	7287	44832	45185	59850	59850					-0.006305117191004683
VVDKDFLDKY	10	Unmodified	_VVDKDFLDKY_					0	0	0		nc|ENSG00000156110|P55263-2|ADK;ENSG00000156110|ENST00000539909|ADK;nc|ENSG00000156110|P55263-3|ADK	nc|ENSG00000156110|P55263-2|ADK	nc|ENSG00000156110|P55263-2|ADK	MULTI-MSMS	A375_MHC_IP_R1	1	414.9518737792969	3	414.551928	1240.63395	0.3018	0.00012511	-0.34863	-0.00014453	-0.04683	-1.9413E-05	414.55173652659806	52.45	0.65923	52.45	52.085	52.744	0					29	12	3	0	0	0	0.034789	1	18630	18630		80.24	58.998	1	5765900			61434	6174	44833	45186	59851	59851					0.02326246612074101
VVDKDFLDKY	10	Unmodified	_VVDKDFLDKY_					0	0	0		nc|ENSG00000156110|P55263-2|ADK;ENSG00000156110|ENST00000539909|ADK;nc|ENSG00000156110|P55263-3|ADK	nc|ENSG00000156110|P55263-2|ADK	nc|ENSG00000156110|P55263-2|ADK	MULTI-MSMS	A375_MHC_IP_R2	2	414.9515075683594	3	414.551928	1240.63395	-0.27386	-0.00011353	-0.13001	-5.3895E-05	-0.40386	-0.00016742	414.5517936947344	51.724	0.66283	52.476	52.219	52.882	0.75225					19	12	2	0	0	0	0.095191	1	19507	19507		64.688	47.639	1	5177100			61435	6174	44833	45186	59852	59852					0.02326246612074101
VVDKTLLLV	9	Unmodified	_VVDKTLLLV_					0	0	0		ENSG00000171067|ENST00000304271|C11orf24	ENSG00000171067|ENST00000304271|C11orf24	ENSG00000171067|ENST00000304271|C11orf24	MULTI-SECPEP	A375_MHC_IP_R1	1	500.72607421875	2	500.326068	998.637583	-0.58451	-0.00029244	0.14778	7.394E-05	-0.43672	-0.0002185	500.3261147807508	85.488	0.65996	85.488	85.261	85.921	0					29	12	4	0	0	0	0.11711	1	31351	31351		60.074	0	1	5785300			61436	7571	44834	45187	59853	59853					0.1382096117662286
VVDNLQHLY	9	Unmodified	_VVDNLQHLY_					0	0	0		ENSG00000010322|ENST00000345716|NISCH;nc|ENSG00000010322|Q9Y2I1-4|NISCH;nc|ENSG00000010322|Q9Y2I1-3|NISCH	ENSG00000010322|ENST00000345716|NISCH	ENSG00000010322|ENST00000345716|NISCH	MULTI-SECPEP	A375_MHC_IP_R1	1	551.1898803710938	2	550.790381	1099.56621	-0.5654	-0.00031142	0.74174	0.00040855	0.17635	9.713E-05	550.7904619559699	59.251	0.61004	59.251	58.938	59.548	0					16	11	2	0	0	0	0.05021	1	21318	21318		69.105	32.978	1	2501600			61437	980	44835	45188	59854	59854					0.020408414719668144
VVDNLQHLY	9	Unmodified	_VVDNLQHLY_					0	0	0		ENSG00000010322|ENST00000345716|NISCH;nc|ENSG00000010322|Q9Y2I1-4|NISCH;nc|ENSG00000010322|Q9Y2I1-3|NISCH	ENSG00000010322|ENST00000345716|NISCH	ENSG00000010322|ENST00000345716|NISCH	MULTI-SECPEP	A375_MHC_IP_R2	2	551.1900024414062	2	550.790381	1099.56621	-1.1007	-0.00060623	-0.025107	-1.3829E-05	-1.1258	-0.00062006	550.7904512275783	58.412	0.35693	59.161	59.032	59.389	0.74894					11	6	2	0	0	0	0.03109	1	22146	22146		103.35	71.048	1	2260400			61438	980	44835	45188	59855	59855					0.020408414719668144
VVDPFSKKDW	10	Unmodified	_VVDPFSKKDW_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000507485.1_1_4:152020792-152024033:+|nuORF;ENST00000443616.1_1_1:119669641-119669854:-|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	A375_MHC_IP_R1	1	407.94854736328125	3	407.548518	1219.62372	-0.19949	-8.1301E-05	0.40108	0.00016346	0.20159	8.2158E-05	407.8830735020305	60.206	0.50866	60.206	59.955	60.464	0					20	9	3	0	0	0	0.14143	1	21675	21675		42.068	27.85	1	2444600			61439	5559	44836	45189	59856	59856					0.022696836775139673
VVDPFSKKDW	10	Unmodified	_VVDPFSKKDW_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000507485.1_1_4:152020792-152024033:+|nuORF;ENST00000443616.1_1_1:119669641-119669854:-|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-SECPEP	A375_MHC_IP_R2	2	407.9484558105469	3	407.548518	1219.62372	-0.38751	-0.00015793	-0.28645	-0.00011674	-0.67396	-0.00027467	407.54849395509086	59.388	0.50372	60.135	59.896	60.4	0.74714					19	9	3	0	0	0	0.2729	1	22476	22476		42.068	27.85	1	2702900			61440	5559	44836	45189	59857	59857					0.022696836775139673
VVDPGDPRSY	10	Unmodified	_VVDPGDPRSY_					0	0	0		ENSG00000130669|ENST00000360442|PAK4;nc|ENSG00000130669|O96013-2|PAK4;nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4	ENSG00000130669|ENST00000360442|PAK4	ENSG00000130669|ENST00000360442|PAK4	MULTI-MSMS	A375_MHC_IP_R1	1	553.1697387695312	2	552.769645	1103.52474	-0.32009	-0.00017693	0.54381	0.0003006	0.22372	0.00012367	552.769783495553	39.184	0.86228	39.184	38.679	39.541	0					52	16	4	0	0	0	0.35113	2	13321	13321;13337		37.075	24.543	1	9487500			61441	4261	44837	45190	59858;59859	59858					-0.022883392873836783
VVDPGDPRSY	10	Unmodified	_VVDPGDPRSY_					0	0	0		ENSG00000130669|ENST00000360442|PAK4;nc|ENSG00000130669|O96013-2|PAK4;nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4	ENSG00000130669|ENST00000360442|PAK4	ENSG00000130669|ENST00000360442|PAK4	MULTI-MSMS	A375_MHC_IP_R2	2	553.1688842773438	2	552.769645	1103.52474	-1.1411	-0.00063078	0.64728	0.0003578	-0.49384	-0.00027298	552.7698013488025	38.474	1.0729	39.249	38.739	39.812	0.77451					58	20	5	0	0	0	0.26783	1	14135	14135		42.312	28.406	1	8827000			61442	4261	44837	45190	59860	59860					-0.022883392873836783
VVDPLNGWMY	10	Oxidation (M)	_VVDPLNGWM(Oxidation (M))Y_		VVDPLNGWM(1)Y		VVDPLNGWM(100)Y	0	0	1		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-MSMS	A375_MHC_IP_R1	1	605.6845703125	2	605.284074	1208.5536	-0.20473	-0.00012392	-0.3555	-0.00021518	-0.56024	-0.0003391	605.283928396467	118.06	0.76108	118.06	117.46	118.22	0					26	14	2	0	0	0	0.0062475	1	43301	43301		103.42	80.683	1	10869000			61443	3844	44838	45191	59861	59861		195			-0.04233937982621683
VVDPLNGWMY	10	Oxidation (M)	_VVDPLNGWM(Oxidation (M))Y_		VVDPLNGWM(1)Y		VVDPLNGWM(110)Y	0	0	1		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-MSMS	A375_MHC_IP_R2	2	605.6851806640625	2	605.284074	1208.5536	-0.29262	-0.00017712	0.12316	7.4548E-05	-0.16946	-0.00010257	605.2842780293358	117.33	0.86249	117.99	117.43	118.29	0.65962					32	16	3	0	0	0	0.011669	1	44235	44235		114.2	82.933	1	10374000			61444	3844	44838	45191	59862	59862		195			-0.04233937982621683
VVDPLNGWMY	10	Oxidation (M)	_VVDPLNGWM(Oxidation (M))Y_		VVDPLNGWM(1)Y		VVDPLNGWM(93)Y	0	0	1		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MSMS	A375_MHC_IP_R2	2	605.1903076171875	2	605.284074	1208.5536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.56	1	121.07	120.57	121.57	0.50731								0	0	0	0.0014042	1	46020	46020		93.166	68.175	1				61445	3844	44838	45191	59863	59863		195			-0.04233937982621683
VVDPLNGWMY	10	Unmodified	_VVDPLNGWMY_					0	0	0		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-MSMS	A375_MHC_IP_R2	2	597.6858520507812	2	597.286617	1192.55868	-0.63306	-0.00037812	0.23672	0.00014139	-0.39634	-0.00023673	597.2869358262715	128.23	0.51147	128.47	128.3	128.81	0.23946					17	9	4	0	0	0	0.026732	1	50341	50341		82.529	50.224	1	21935000			61446	3844	44838	45192	59864	59864					-0.029896341199901144
VVDPLRGTMYW	11	Oxidation (M)	_VVDPLRGTM(Oxidation (M))YW_		VVDPLRGTM(1)YW		VVDPLRGTM(57)YW	0	0	1		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-MSMS	A375_MHC_IP_R1	1	677.2371215820312	2	676.837005	1351.65946	-0.78408	-0.00053069	0.2081	0.00014085	-0.57597	-0.00038984	676.8371579928729	90.193	0.7602	90.193	89.83	90.59	0					37	14	3	0	0	0	0.1757	1	33151	33151		57.108	41.859	1	5940600			61447	3844	44839	45193	59865	59865		196			-0.0023060213713961275
VVDPLRGTMYW	11	Oxidation (M)	_VVDPLRGTM(Oxidation (M))YW_		VVDPLRGTM(1)YW		VVDPLRGTM(46)YW	0	0	1		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-MSMS	A375_MHC_IP_R2	2	677.2362670898438	2	676.837005	1351.65946	-0.58649	-0.00039696	-0.24647	-0.00016682	-0.83296	-0.00056378	676.8368238706543	89.542	0.91409	90.273	89.836	90.751	0.7318					39	17	4	0	0	0	0.30351	1	34069	34069		46.475	35.676	1	6722900			61448	3844	44839	45193	59866	59866		196			-0.0023060213713961275
VVDPLRGTMYW	11	Unmodified	_VVDPLRGTMYW_					0	0	0		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	A375_MHC_IP_R1	1	669.2391967773438	2	668.839548	1335.66454	-0.4846	-0.00032412	-0.68523	-0.00045831	-1.1698	-0.00078243	668.8392657989187	105.43	0.76149	105.43	105.15	105.91	0					21	14	2	0	0	0	0.1639	1	38724	38724		68.76	32.254	1	7335600			61449	3844	44839	45194	59867	59867					0.010137017254919556
VVDPLRGTMYW	11	Unmodified	_VVDPLRGTMYW_					0	0	0		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	A375_MHC_IP_R2	2	669.2392578125	2	668.839548	1335.66454	-0.71806	-0.00048027	-1.2234	-0.00081823	-1.9414	-0.0012985	668.8393991644167	104.62	1.0183	105.38	105	106.02	0.76308					33	19	3	0	0	0	0.18699	1	39585	39585		64.927	35.086	1	6886000			61450	3844	44839	45194	59868	59868					0.010137017254919556
VVDPNQVNV	9	Unmodified	_VVDPNQVNV_					0	0	0		nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2	nc|ENSG00000130589|Q9BYK8|HELZ2	nc|ENSG00000130589|Q9BYK8|HELZ2	MULTI-SECPEP	A375_MHC_IP_R1	1	492.4774169921875	2	492.261456	982.50836	-0.10428	-5.1334E-05	-0.4425	-0.00021782	-0.54678	-0.00026916	492.26116593341436	49.768	0.51025	49.768	49.591	50.101	0					14	9	2	0	0	0	0.34746	1	17632	17632		45.7	22.963	1	1978000			61451	14599	44840	45195	59869	59869					0.016405795465288975
VVDPNQVNV	9	Unmodified	_VVDPNQVNV_					0	0	0		nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2	nc|ENSG00000130589|Q9BYK8|HELZ2	nc|ENSG00000130589|Q9BYK8|HELZ2	MULTI-SECPEP	A375_MHC_IP_R2	2	492.4775695800781	2	492.261456	982.50836	-0.71951	-0.00035418	0.0020603	1.0142E-06	-0.71745	-0.00035317	492.2613881700885	49.162	0.40568	49.919	49.69	50.096	0.75737					14	7	2	0	0	0	0.14572	1	18453	18453		38.176	2.0485	1	2209600			61452	14599	44840	45195	59870	59870					0.016405795465288975
VVDPVHGFMYW	11	Oxidation (M)	_VVDPVHGFM(Oxidation (M))YW_		VVDPVHGFM(1)YW		VVDPVHGFM(100)YW	0	0	1		nc|ENSG00000130164|P01130-2|LDLR;nc|ENSG00000130164|P01130-3|LDLR;nc|ENSG00000130164|P01130-6|LDLR;nc|ENSG00000130164|P01130-4|LDLR;nc|ENSG00000130164|P01130-5|LDLR;ENSG00000130164|ENST00000558518|LDLR	nc|ENSG00000130164|P01130-2|LDLR	nc|ENSG00000130164|P01130-2|LDLR	MULTI-SECPEP	A375_MHC_IP_R1	1	683.7178955078125	2	683.318448	1364.62234	-0.5874	-0.00040138	-0.011192	-7.6479E-06	-0.59859	-0.00040903	683.31848913491	103.18	0.71295	103.18	102.81	103.52	0					37	13	4	0	0	0	0.035142	1	37883	37883		103.35	48.119	1	6873700			61453	4225	44841	45196	59871	59871		217			-0.04538273682896943
VVDPVHGFMYW	11	Oxidation (M)	_VVDPVHGFM(Oxidation (M))YW_		VVDPVHGFM(1)YW		VVDPVHGFM(56)YW	0	0	1		nc|ENSG00000130164|P01130-2|LDLR;nc|ENSG00000130164|P01130-3|LDLR;nc|ENSG00000130164|P01130-6|LDLR;nc|ENSG00000130164|P01130-4|LDLR;nc|ENSG00000130164|P01130-5|LDLR;ENSG00000130164|ENST00000558518|LDLR	nc|ENSG00000130164|P01130-2|LDLR	nc|ENSG00000130164|P01130-2|LDLR	MULTI-SECPEP	A375_MHC_IP_R2	2	683.7166748046875	2	683.318448	1364.62234	-0.64057	-0.00043771	0.47489	0.0003245	-0.16568	-0.00011321	683.8205620740232	105.46	1.68	106.22	105.82	107.5	0.76162					43	32	2	0	0	0	0.28117	1	39910	39910		56.177	27.683	1	2140200			61454	4225	44841	45196	59872	59872		217			-0.04538273682896943
VVDPVHGFMYW	11	Oxidation (M)	_VVDPVHGFM(Oxidation (M))YW_					0	0	1		nc|ENSG00000130164|P01130-2|LDLR;nc|ENSG00000130164|P01130-3|LDLR;nc|ENSG00000130164|P01130-6|LDLR;nc|ENSG00000130164|P01130-4|LDLR;nc|ENSG00000130164|P01130-5|LDLR;ENSG00000130164|ENST00000558518|LDLR	nc|ENSG00000130164|P01130-2|LDLR	nc|ENSG00000130164|P01130-2|LDLR	MULTI-MATCH	A375_MHC_IP_R2	2		2	683.318448	1364.62234	-0.65184	-0.00044542	-0.01455	-9.9422E-06	-0.66639	-0.00045536	683.3183493491437	102.43	0.61032	103.19	102.87	103.48	0.76429	0.0078503	-2.0542E-06	NaN	103.35	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6830000			61455	4225	44841	45196				217			-0.04538273682896943
VVDSSLELA	9	Unmodified	_VVDSSLELA_					0	0	0			REV__ENST00000527653.1_1_8:145139038-145139470:+|nuORF	REV__ENST00000527653.1_1_8:145139038-145139470:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	934.5567016601562	1	932.493504	931.486227	0.15133	0.00014112	-0.49239	-0.00045915	-0.34106	-0.00031803	932.4931478181416	106.59	0.87035	106.59	106.21	107.08	0					40	16	3	0	0	0	0.46038	1	39208	39208		21.747	0	1	10266000	+		61456	22324	44842	45197	59873	59873					0.017743550780892292
VVEELLVY	8	Unmodified	_VVEELLVY_					0	0	0			REV__ENSG00000138193|ENST00000371380|PLCE1	REV__ENSG00000138193|ENST00000371380|PLCE1	MULTI-SECPEP	A375_MHC_IP_R1	1	482.9803466796875	2	482.273501	962.532449	-0.59931	-0.00028903	0.95527	0.0004607	0.35596	0.00017167	482.2740670474887	23.457	0.25562	23.457	23.278	23.533	0					7	4	2	0	0	0	0.972	1	6451	6451		5.2307	0	1	2691400	+		61457	19077	44843	45198	59874	59874					0.04968419980184535
VVEENREPTMY	11	Unmodified	_VVEENREPTMY_					0	0	0		C1S|p.G479E|1|0.23|ENSG00000182326|chr12:7070020-7070020|G/A|missense_variant	C1S|p.G479E|1|0.23|ENSG00000182326|chr12:7070020-7070020|G/A|missense_variant	C1S|p.G479E|1|0.23|ENSG00000182326|chr12:7070020-7070020|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	683.7192993164062	2	683.819009	1365.62347	-0.48269	-0.00033007	0.99066	0.00067743	0.50798	0.00034736	683.8198073191013	106.07	0.56066	106.07	105.7	106.27	0					15	10	2	0	0	0	0.99526	1	38998	38998		3.5965	2.4032	1	1317500			61458	265	44844	45199	59875	59875					-0.044721041046386745
VVEGNHTVY	9	Unmodified	_VVEGNHTVY_					0	0	0		nc|ENSG00000108669|Q15438-3|CYTH1;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000108669|ENST00000446868|CYTH1	nc|ENSG00000108669|Q15438-3|CYTH1	nc|ENSG00000108669|Q15438-3|CYTH1	MULTI-MSMS	A375_MHC_IP_R2	2	509.2023620605469	2	509.253631	1016.49271	-0.60711	-0.00030917	-0.48501	-0.00024699	-1.0921	-0.00055616	509.2533627316138	44.131	0.65858	44.9	44.53	45.188	0.76909					24	12	2	0	0	0	0.67372	1	16323	16323		9.3474	0.75416	1	7485700			61459	2827	44845	45200	59876	59876					-0.014877069705221402
VVENFSLTMEK	11	Unmodified	_VVENFSLTMEK_					0	0	0		tr|U7T3G1|U7T3G1_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00629PE=3SV=1	tr|U7T3G1|U7T3G1_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00629PE=3SV=1	tr|U7T3G1|U7T3G1_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00629PE=3SV=1	MSMS	A375_MHC_IP_R1	1	648.7799072265625	2	648.828846	1295.64314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.496	1	98.496	97.996	98.996	0								0	0	0	0.16124	1	36188	36188		12.241	2.1667	1				61460	29972	44846	45201	59877	59877					0.007142719061221214
VVEQLKDWLY	10	Unmodified	_VVEQLKDWLY_					0	0	0		ENSG00000164109|ENST00000296509|MAD2L1	ENSG00000164109|ENST00000296509|MAD2L1	ENSG00000164109|ENST00000296509|MAD2L1	MULTI-SECPEP	A375_MHC_IP_R2	2	647.248291015625	2	646.847896	1291.68124	-0.43093	-0.00027875	0.41398	0.00026778	-0.016949	-1.0963E-05	646.8480955236729	99.906	0.65884	100.67	100.37	101.03	0.76278					20	12	2	0	0	0	0.34614	1	37910	37910		60.899	24.393	1	2679000			61461	6781	44847	45202	59878	59878					0.04706525883102586
VVEQLLAFIY	10	Unmodified	_VVEQLLAFIY_					0	0	0		ENST00000436674.5_1_22:38617478-38642853:-|nuORF	ENST00000436674.5_1_22:38617478-38642853:-|nuORF	ENST00000436674.5_1_22:38617478-38642853:-|nuORF	MSMS	A375_MHC_IP_R1	1	597.84326171875	2	597.842082	1193.66961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.717	1	99.717	99.217	100.22	0								0	0	0	0.15207	1	36635	36635		13.906	0.86358	1				61462	11931	44848	45203	59879	59879					0.08052328859776026
VVESPVRIL	9	Unmodified	_VVESPVRIL_					0	0	0			REV__nc|ENSG00000144741|Q70HW3-3|SLC25A26	REV__nc|ENSG00000144741|Q70HW3-3|SLC25A26	MULTI-MSMS	A375_MHC_IP_R1	1	507.9646301269531	2	506.313492	1010.61243	-0.57014	-0.00028867	-0.53747	-0.00027213	-1.1076	-0.0005608	506.3134004799557	84.415	1.7776	84.415	83.736	85.513	0					105	34	5	0	0	0	0.5339	1	30957	30957		18.135	2.2878	1	106490000	+		61463	19444	44849	45204	59880	59880					0.10754906374052098
VVEVWEGYQW	10	Unmodified	_VVEVWEGYQW_					0	0	0			REV__nc|ENSG00000162909|P17655-2|CAPN2;REV__ENSG00000203697|ENST00000366872|CAPN8	REV__nc|ENSG00000162909|P17655-2|CAPN2	MSMS	A375_MHC_IP_R1	1	647.749267578125	2	647.808771	1293.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.74	1	100.74	100.24	101.24	0								0	0	0	0.15105	1	37027	37027		15.847	6.3032	1		+		61464	20322;22465	44850	45205	59881	59881					-0.03206906702143897
VVFAKEQPAH	10	Unmodified	_VVFAKEQPAH_					0	0	0		nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.R4794Afs*50|1|0.26|ENSG00000154358|chr1:228319130-228319130|C/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.C2753Afs*104|1|0.16|ENSG00000154358|chr1:228281992-228282004|TGCAGCTTTGAGT/-|frameshift_variant;OBSCN|p.V3655Wfs*18|1|0.18|ENSG00000154358|chr1:228293443-228293443|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9-3|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	MSMS	A375_MHC_IP_R2	2	375.91705322265625	3	375.873224	1124.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.069	1	19.672	19.172	20.172	0.60308								0	0	0	0.15353	1	5808	5808		5.4027	0	1				61465	14690	44851	45206	59882	59882					0.0405283422589946
VVFFKVTP	8	Unmodified	_VVFFKVTP_					0	0	0			REV__ENSG00000197635|ENST00000360534|DPP4	REV__ENSG00000197635|ENST00000360534|DPP4	MULTI-MSMS	A375_MHC_IP_R2	2	937.8189086914062	1	936.555316	935.54804	-0.046563	-4.3609E-05	-0.022645	-2.1208E-05	-0.069208	-6.4817E-05	936.5552103006194	140.01	0.46245	140.07	139.8	140.26	0.059906					19	8	3	0	0	0	0.7779	1	54749	54749		2.5775	1.7838	1	2581500	+		61466	22305	44852	45207	59883	59883					0.07768751287892428
VVFFKVTP	8	Unmodified	_VVFFKVTP_					0	0	0			REV__ENSG00000197635|ENST00000360534|DPP4	REV__ENSG00000197635|ENST00000360534|DPP4	MULTI-MATCH	A375_MHC_IP_R1	1		1	936.555316	935.54804	-0.36718	-0.00034389	0.81406	0.00076242	0.44688	0.00041853	936.5559117644518	140.16	0.40938	140.16	139.88	140.29	0	0.046159	0.00057884	NaN	2.5775	18	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2771900	+		61467	22305	44852	45207							0.07768751287892428
VVFFKVTP	8	Unmodified	_VVFFKVTP_					0	0	0			REV__ENSG00000197635|ENST00000360534|DPP4	REV__ENSG00000197635|ENST00000360534|DPP4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	936.555316	935.54804	-0.046563	-4.3609E-05	-0.022645	-2.1208E-05	-0.069208	-6.4817E-05	936.5552103006194	140.01	0.46245	140.07	139.8	140.26	0.059906	-0.046159	-0.00020478	NaN	2.5775	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2581500	+		61468	22305	44852	45207							0.07768751287892428
VVFGGQKQG	9	Unmodified	_VVFGGQKQG_					0	0	0			REV__CLCA1|p.P534L|1|0.27|ENSG00000016490|chr1:86493520-86493520|C/T|missense_variant	REV__CLCA1|p.P534L|1|0.27|ENSG00000016490|chr1:86493520-86493520|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	460.7070007324219	2	460.253434	918.492316	0.033337	1.5344E-05	-4.3203	-0.0019884	-4.287	-0.0019731	460.25244007794856	22.866	0.25075	22.866	22.673	22.924	0					5	4	2	0	0	0	0.73415	1	6152	6152		3.9444	1.3669	1	499430	+		61469	15795	44853	45208	59884	59884					0.029809181002860896
VVFIFLLLAF	10	Unmodified	_VVFIFLLLAF_					0	0	0		ENSG00000104321|ENST00000262209|TRPA1	ENSG00000104321|ENST00000262209|TRPA1	ENSG00000104321|ENST00000262209|TRPA1	MSMS	A375_MHC_IP_R2	2	591.5132446289062	2	591.370278	1180.726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.055	1	89.787	89.287	90.287	0.7318								0	0	0	0.15577	1	33894	33894		4.3292	2.8473	1				61470	2497	44854	45209	59885	59885					0.14287001487105044
VVFLVKFLLA	10	Unmodified	_VVFLVKFLLA_					0	0	0		ENSG00000171714|ENST00000324559|ANO5	ENSG00000171714|ENST00000324559|ANO5	ENSG00000171714|ENST00000324559|ANO5	MULTI-MSMS	A375_MHC_IP_R2	2	1149.146240234375	1	1148.74418	1147.7369	0.33493	0.00038475	1.232	0.0014152	1.5669	0.0018	1148.745585185596	146.67	0.11188	146.69	146.66	146.77	0.019913					11	8	2	0	0	0	0.72747	1	57121	57121		0	0	1	196180			61471	7630	44855	45210	59886	59886					0.16894403861397222
VVFRRRWSV	9	Unmodified	_VVFRRRWSV_					0	0	0		ENSG00000134780|ENST00000257215|DAGLA	ENSG00000134780|ENST00000257215|DAGLA	ENSG00000134780|ENST00000257215|DAGLA	MULTI-SECPEP	A375_MHC_IP_R1	1	603.1854248046875	2	602.856724	1203.69889	-0.34412	-0.00020745	-1.0364	-0.00062482	-1.3805	-0.00083227	602.8558504966483	73.175	0.30473	73.175	73.031	73.336	0					9	5	2	0	0	0	0.77834	1	26655	26655		8.5933	6.9407	1	1186200			61472	4609	44856	45211	59887	59887					0.10519330719262143
VVGAPRGR	8	Unmodified	_VVGAPRGR_					0	0	0		nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2;ENST00000463554.5_1_2:233599907-233635753:+|nuORF	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	MULTI-MSMS	A375_MHC_IP_R2	2	406.6484069824219	2	406.248486	810.48242	0.042671	1.7335E-05	0.038461	1.5625E-05	0.081131	3.2959E-05	406.248381218645	124.64	2.5228	124.97	124.6	127.12	0.32969					77	49	3	0	0	0	0.77839	2	48109	48109;48553		0.79363	0	1	352260000			61473	9407	44857	45212	59888;59889	59888					0.06959774885569914
VVGAQRVNP	9	Unmodified	_VVGAQRVNP_					0	0	0		ENST00000573151.5_1_19:52206422-52207434:+|nuORF	ENST00000573151.5_1_19:52206422-52207434:+|nuORF	ENST00000573151.5_1_19:52206422-52207434:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	471.010498046875	2	470.272158	938.529764	-0.55117	-0.0002592	0.5378	0.00025291	-0.013369	-6.287E-06	470.27245670194145	132.27	1.0697	132.46	132.25	133.32	0.18953					25	20	2	0	0	0	0.8028	1	52099	52099		4.3292	0	1	1589600			61474	13624	44858	45213	59890	59890					0.05804009365908769
VVGARIVRL	9	Unmodified	_VVGARIVRL_					0	0	0			REV__ENST00000305352.6_1_1:101706060-101706231:+|nuORF	REV__ENST00000305352.6_1_1:101706060-101706231:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	492.2293395996094	2	491.829643	981.644734	-0.68185	-0.00033536	0.29831	0.00014672	-0.38354	-0.00018864	491.8296011447106	147.79	0.19933	147.79	147.7	147.9	0					37	14	4	0	0	0	0.77827	1	56455	56455		0	0	1	158320	+		61475	23460	44859	45214	59891	59891					0.15317738567716788
VVGARIVRL	9	Unmodified	_VVGARIVRL_					0	0	0			REV__ENST00000305352.6_1_1:101706060-101706231:+|nuORF	REV__ENST00000305352.6_1_1:101706060-101706231:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	983.0514526367188	1	982.65201	981.644734	0.18641	0.00018317	0.024763	2.4333E-05	0.21117	0.00020751	982.6517045254764	147.79	0.23662	147.81	147.72	147.95	0.018707					39	15	3	0	0	0	0.77827	1	57431	57431		0	0	1	324820	+		61476	23460	44859	45214	59892	59892					0.15317738567716788
VVGARIVRL	9	Unmodified	_VVGARIVRL_					0	0	0			REV__ENST00000305352.6_1_1:101706060-101706231:+|nuORF	REV__ENST00000305352.6_1_1:101706060-101706231:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	491.829643	981.644734	-0.68185	-0.00033536	0.29831	0.00014672	-0.38354	-0.00018864	491.8296011447106	147.79	0.19933	147.79	147.7	147.9	0	-0.018065	0.0002069	NaN	0	37	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158320	+		61477	23460	44859	45214							0.15317738567716788
VVGARIVRL	9	Unmodified	_VVGARIVRL_					0	0	0			REV__ENST00000305352.6_1_1:101706060-101706231:+|nuORF	REV__ENST00000305352.6_1_1:101706060-101706231:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	982.65201	981.644734	0.18641	0.00018317	0.024763	2.4333E-05	0.21117	0.00020751	982.6517045254764	147.79	0.23662	147.81	147.72	147.95	0.018707	0.014368	3.4927E-06	NaN	0	39	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324820	+		61478	23460	44859	45214							0.15317738567716788
VVGARIVRL	9	Unmodified	_VVGARIVRL_					0	0	0			REV__ENST00000305352.6_1_1:101706060-101706231:+|nuORF	REV__ENST00000305352.6_1_1:101706060-101706231:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	491.829643	981.644734	-0.3335	-0.00016402	-0.054512	-2.6811E-05	-0.38801	-0.00019084	491.8295189658691	147.8	0.20616	147.82	147.72	147.92	0.018707	0.018065	-0.00014016	NaN	0	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148920	+		61479	23460	44859	45214							0.15317738567716788
VVGKKRQNIL	10	Unmodified	_VVGKKRQNIL_					0	0	0		ENST00000508451.1_1_5:10250422-10254994:+|nuORF	ENST00000508451.1_1_5:10250422-10254994:+|nuORF	ENST00000508451.1_1_5:10250422-10254994:+|nuORF	MSMS	A375_MHC_IP_R1	1	385.6319885253906	3	385.583785	1153.72953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.345	1	37.345	36.845	37.845	0								0	0	0	0.15513	1	12582	12582		4.1895	0	1				61480	12879	44860	45215	59893	59893					0.1588106431365759
VVGLMPSRLVS	11	Unmodified	_VVGLMPSRLVS_					0	0	0			REV__PCCA|p.P667L|1|0.34|ENSG00000175198|chr13:100515527-100515527|C/T|missense_variant	REV__PCCA|p.P667L|1|0.34|ENSG00000175198|chr13:100515527-100515527|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	386.6326904296875	3	386.561881	1156.66381	0.070535	2.7266E-05	4.3573	0.0016844	4.4278	0.0017116	386.56332298225504	24.372	0.45589	24.372	24.042	24.498	0					9	8	2	0	0	0	0.65093	1	6896	6896		15.538	0	1	2443100	+		61481	27721	44861	45216	59894	59894					0.09174907076430827
VVGNPRSW	8	Unmodified	_VVGNPRSW_					0	0	0		ENSG00000100926|ENST00000261789|TM9SF1;nc|ENSG00000100926|O15321-2|TM9SF1	ENSG00000100926|ENST00000261789|TM9SF1	ENSG00000100926|ENST00000261789|TM9SF1	MULTI-SECPEP	A375_MHC_IP_R2	2	457.2565612792969	2	457.745776	913.477	-0.80101	-0.00036666	0.71264	0.00032621	-0.088375	-4.0453E-05	457.74605734650123	33.887	0.30309	34.639	34.5	34.803	0.75225					8	5	2	0	0	0	0.88903	1	12156	12156		30.637	12.502	1	1577800			61482	2233	44862	45217	59895	59895					0.01680051303083019
VVGPGRGRA	9	Unmodified	_VVGPGRGRA_					0	0	0		ENST00000590548.5_1_19:11594499-11598073:-|nuORF	ENST00000590548.5_1_19:11594499-11598073:-|nuORF	ENST00000590548.5_1_19:11594499-11598073:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	435.15875244140625	2	434.759218	867.503883	-0.26773	-0.0001164	-0.018776	-8.1632E-06	-0.2865	-0.00012456	434.75913058260033	122.63	0.96076	123.01	122.82	123.78	0.37661					32	18	2	0	0	0	0.72985	1	47037	47037		4.3292	0	1	108940000			61483	13786	44863	45218	59896	59896					0.06483159914284897
VVGSRSYQY	9	Unmodified	_VVGSRSYQY_					0	0	0		ENSG00000127311|ENST00000247815|HELB;nc|ENSG00000127311|Q8NG08-2|HELB	ENSG00000127311|ENST00000247815|HELB	ENSG00000127311|ENST00000247815|HELB	MULTI-SECPEP	A375_MHC_IP_R1	1	353.91363525390625	3	353.513696	1057.51926	-0.046088	-1.6293E-05	-0.19433	-6.87E-05	-0.24042	-8.4993E-05	353.51363492372434	25.179	0.45783	25.179	25.053	25.511	0					12	8	2	0	0	0	0.74875	1	7344	7344		7.1017	0	1	3550800			61484	4082	44864	45219	59897	59897					-0.00720018079186957
VVGSRSYQY	9	Unmodified	_VVGSRSYQY_					0	0	0		ENSG00000127311|ENST00000247815|HELB;nc|ENSG00000127311|Q8NG08-2|HELB	ENSG00000127311|ENST00000247815|HELB	ENSG00000127311|ENST00000247815|HELB	MULTI-MATCH	A375_MHC_IP_R2	2		3	353.513696	1057.51926	-0.56674	-0.00020035	-0.28152	-9.9519E-05	-0.84825	-0.00029987	353.51351983983386	24.543	0.25446	25.187	25.06	25.314	0.64368	0.0037937	-6.8002E-05	NaN	7.1017	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3700800			61485	4082	44864	45219							-0.00720018079186957
VVGTAAIRFDP	11	Unmodified	_VVGTAAIRFDP_					0	0	0			REV__ENSG00000165733|ENST00000374518|BMS1;REV__ENST00000443754.1_1_9:67328347-67334199:-|nuORF	REV__ENST00000443754.1_1_9:67328347-67334199:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	382.94842529296875	3	382.548629	1144.62406	-0.11448	-4.3795E-05	-0.28048	-0.0001073	-0.39496	-0.00015109	382.54848426932176	30.553	0.40282	31.272	31.064	31.467	0.71857					15	7	3	0	0	0	0.95991	1	10761	10761		2.4348	0	1	3308400	+		61486	20620;24828	44865	45220	59898	59898					0.05753103397364612
VVHGSLVT	8	Unmodified	_VVHGSLVT_					0	0	0			REV__nc|ENSG00000156113|Q12791-5|KCNMA1	REV__nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-MSMS	A375_MHC_IP_R1	1	811.7860107421875	1	811.467229	810.459953	-0.75339	-0.00061135	1.3341	0.0010826	0.58075	0.00047126	811.4679836056508	143.55	0.54053	143.55	143.39	143.94	0					16	10	3	0	0	0	0.77839	1	55207	55207		0.79363	0	1	2927200	+		61487	19962	44866	45221	59899	59899					0.047141306972775965
VVHGYQIRY	9	Unmodified	_VVHGYQIRY_					0	0	0		ENSG00000125872|ENST00000378858|LRRN4	ENSG00000125872|ENST00000378858|LRRN4	ENSG00000125872|ENST00000378858|LRRN4	MULTI-SECPEP	A375_MHC_IP_R1	1	568.1143798828125	2	567.806365	1133.59818	0.23093	0.00013112	-0.39372	-0.00022356	-0.16279	-9.2435E-05	568.3075350531595	44.85	0.45541	44.85	44.676	45.132	0					12	8	2	0	0	0	0.775	1	15743	15743		15.847	11.518	1	2266500			61488	4004	44867	45222	59900	59900					0.03672253945751436
VVHPPPLG	8	Unmodified	_VVHPPPLG_					0	0	0		ENST00000375286.7_1_17:73061353-73061731:+|nuORF	ENST00000375286.7_1_17:73061353-73061731:+|nuORF	ENST00000375286.7_1_17:73061353-73061731:+|nuORF	MSMS	A375_MHC_IP_R2	2	408.16033935546875	2	408.242338	814.470124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.96	1	147.98	147.48	148.48	0.018707								0	0	0	0.16876	1	57483	57483		0.79363	0	1				61489	11268	44868	45223	59901	59901					0.05546738422515318
VVHRILKG	8	Unmodified	_VVHRILKG_					0	0	0		ENSG00000163239|ENST00000368482|TDRD10;nc|ENSG00000163239|Q5VZ19|TDRD10	ENSG00000163239|ENST00000368482|TDRD10	ENSG00000163239|ENST00000368482|TDRD10	MULTI-MSMS	A375_MHC_IP_R1	1	461.7030944824219	2	461.303262	920.59197	-0.59117	-0.00027271	0.47463	0.00021895	-0.11655	-5.3763E-05	461.30338740740854	147.86	0.25131	147.86	147.78	148.03	0					23	9	3	0	0	0	0.77861	1	56480	56480		0	0	1	295120			61490	6640	44869	45224	59902	59902					0.12849780504905084
VVHRILKG	8	Unmodified	_VVHRILKG_					0	0	0		ENSG00000163239|ENST00000368482|TDRD10;nc|ENSG00000163239|Q5VZ19|TDRD10	ENSG00000163239|ENST00000368482|TDRD10	ENSG00000163239|ENST00000368482|TDRD10	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	461.303262	920.59197	-0.28014	-0.00012923	-0.033079	-1.5259E-05	-0.31322	-0.00014449	461.30318108618405	147.89	0.29807	147.9	147.81	148.11	0.018692	0.021249	-0.00023334	NaN	0	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240970			61491	6640	44869	45224							0.12849780504905084
VVIDPTRTI	9	Unmodified	_VVIDPTRTI_					0	0	0		ENST00000415778.1_1_6:93801823-93802168:-|nuORF;ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF;COPS5|p.S296Ifs*14|1|0.06|ENSG00000121022|chr8:67045846-67045847|-/T|frameshift_variant;ENSG00000121022|ENST00000357849|COPS5	ENST00000415778.1_1_6:93801823-93802168:-|nuORF	ENST00000415778.1_1_6:93801823-93802168:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	507.70233154296875	2	507.303124	1012.5917	-0.31383	-0.0001592	-0.39919	-0.00020251	-0.71301	-0.00036171	507.3030282021249	63.059	0.76663	63.059	62.711	63.477	0					34	14	3	0	0	0	0.16764	1	22753	22753		51.63	17.527	1	9301200			61492	640	44870	45225	59903	59903					0.08590315994376851
VVIDPTRTI	9	Unmodified	_VVIDPTRTI_					0	0	0		ENST00000415778.1_1_6:93801823-93802168:-|nuORF;ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF;COPS5|p.S296Ifs*14|1|0.06|ENSG00000121022|chr8:67045846-67045847|-/T|frameshift_variant;ENSG00000121022|ENST00000357849|COPS5	ENST00000415778.1_1_6:93801823-93802168:-|nuORF	ENST00000415778.1_1_6:93801823-93802168:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	507.7025146484375	2	507.303124	1012.5917	-0.87673	-0.00044477	-0.23652	-0.00011999	-1.1133	-0.00056476	507.302886909721	62.335	0.81001	63.078	62.724	63.534	0.74263					31	15	3	0	0	0	0.27742	1	23583	23583		43.772	16.889	1	9070100			61493	640	44870	45225	59904	59904					0.08590315994376851
VVIKKRKRPPT	11	Unmodified	_VVIKKRKRPPT_					0	0	0			REV__ENST00000563306.5_1_16:46729840-46730008:+|nuORF	REV__ENST00000563306.5_1_16:46729840-46730008:+|nuORF	MSMS	A375_MHC_IP_R1	1	441.6973571777344	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.605	1	18.605	18.105	19.105	0								0	0	0	0.16358	1	4445	4445		0.094841	0	1		+		61494	16954	44871	45226	59905	59905					0.22417277055819795
VVIKKRKRPPT	11	Unmodified	_VVIKKRKRPPT_					0	0	0			REV__ENST00000563306.5_1_16:46729840-46730008:+|nuORF	REV__ENST00000563306.5_1_16:46729840-46730008:+|nuORF	MSMS	A375_MHC_IP_R2	2	441.6975402832031	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.256	1	17.853	17.353	18.353	0.59616								0	0	0	0.16358	1	5069	5069		0.094841	0	1		+		61495	16954	44871	45226	59906	59906					0.22417277055819795
VVILIVKKRR	10	Unmodified	_VVILIVKKRR_					0	0	0		ENST00000524481.5_1_6:128321419-128841710:-|nuORF	ENST00000524481.5_1_6:128321419-128841710:-|nuORF	ENST00000524481.5_1_6:128321419-128841710:-|nuORF	MSMS	A375_MHC_IP_R2	2	612.399169921875	2	612.43735	1222.86015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.839	1	98.595	98.095	99.095	0.75586								0	0	0	0.15642	1	37129	37129		0	0	1				61496	13057	44872	45227	59907	59907					0.257630800324705
VVIPGFLAL	9	Unmodified	_VVIPGFLAL_					0	0	0		ENST00000531469.5_1_10:126799584-126847254:-|nuORF	ENST00000531469.5_1_10:126799584-126847254:-|nuORF	ENST00000531469.5_1_10:126799584-126847254:-|nuORF	MSMS	A375_MHC_IP_R2	2	464.7968444824219	2	464.796946	927.57934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.17632	1	0.64677	0.14677	1.1468	0.47044								0	0	0	0.15486	1	63	63		0	0	1				61497	13170	44873	45228	59908	59908					0.11265324321959724
VVIVVLLVVL	10	Unmodified	_VVIVVLLVVL_					0	0	0			REV__ENSG00000166734|ENST00000299957|GOLM2;REV__nc|ENSG00000166734|Q6P4E1-2|GOLM2	REV__nc|ENSG00000166734|Q6P4E1-2|GOLM2	MSMS	A375_MHC_IP_R2	2	533.405029296875	2	533.385929	1064.7573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.08	1	149.09	148.59	149.59	0.018707								0	0	0	0.15642	1	57872	57872		0	0	1		+		61498	20697;27339	44874	45229	59909	59909					0.2275157452120311
VVKDTTNKKT	10	Unmodified	_VVKDTTNKKT_					0	0	0		nc|ENSG00000138193|Q9P212-2|PLCE1;ENSG00000138193|ENST00000371380|PLCE1	nc|ENSG00000138193|Q9P212-2|PLCE1	nc|ENSG00000138193|Q9P212-2|PLCE1	MULTI-MSMS	A375_MHC_IP_R2	2	1134.0516357421875	1	1133.65246	1132.64519	0.32142	0.00036438	-0.4996	-0.00056637	-0.17817	-0.00020199	1133.651725974036	149.22	1.6827	149.24	148.25	149.93	0.018707					87	56	2	0	0	0	0.72747	1	58017	58017		0	0	1	199240			61499	4971	44875	45230	59910	59910					0.08417068706216924
VVKEDAFYSW	10	Unmodified	_VVKEDAFYSW_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	A375_MHC_IP_R1	1	622.7032470703125	2	622.303321	1242.59209	-0.39345	-0.00024484	0.029768	1.8525E-05	-0.36368	-0.00022632	622.3034905416511	79.384	0.61682	79.384	79.161	79.778	0					20	11	3	0	0	0	0.12141	1	28993	28993		59.052	34.061	1	2264700			61500	3254	44876	45231	59911	59911					-0.019503090764374065
VVKEDAFYSW	10	Unmodified	_VVKEDAFYSW_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-SECPEP	A375_MHC_IP_R2	2	622.7030029296875	2	622.303321	1242.59209	-0.6763	-0.00042087	0.14947	9.3015E-05	-0.52683	-0.00032785	622.303283678876	78.679	0.50755	79.424	79.134	79.642	0.74474					16	9	2	0	0	0	0.17899	1	29872	29872		74.2	37.693	1	1929100			61501	3254	44876	45231	59912	59912					-0.019503090764374065
VVKEHNSLPK	10	Unmodified	_VVKEHNSLPK_					0	0	0			REV__ENSG00000135912|ENST00000392102|TTLL4	REV__ENSG00000135912|ENST00000392102|TTLL4	MULTI-MSMS	A375_MHC_IP_R1	1	384.62396240234375	3	384.224146	1149.65061	0.65591	0.00025202	-0.46034	-0.00017687	0.19556	7.514E-05	384.2238966222035	39.008	0.91657	39.008	38.475	39.391	0					42	17	4	0	0	0	0.66857	1	13267	13267		15.739	1.5205	1	45417000	+		61502	18897	44877	45232	59913	59913					0.08176792288691104
VVKFGGGT	8	Unmodified	_VVKFGGGT_					0	0	0		tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	383.1185302734375	2	382.718696	763.422839	-0.32912	-0.00012596	-0.6947	-0.00026587	-1.0238	-0.00039184	382.7188339436336	35.192	1.4168	35.955	35.425	36.842	0.76338					39	27	2	0	0	0	0.97021	1	12734	12734		15.847	1.2655	1	13336000			61503	29624	44878	45233	59914	59914					0.03166459151532308
VVKILKVLRV	10	Unmodified	_VVKILKVLRV_					0	0	0		CACNA1D|p.R984K|1|0.34|ENSG00000157388|chr3:53744772-53744772|G/A|missense_variant	CACNA1D|p.R984K|1|0.34|ENSG00000157388|chr3:53744772-53744772|G/A|missense_variant	CACNA1D|p.R984K|1|0.34|ENSG00000157388|chr3:53744772-53744772|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	583.8460083007812	2	583.921001	1165.82745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.153	1	92.892	92.392	93.392	0.73902								0	0	0	0.15642	1	35048	35048		0	0	1				61504	276	44879	45234	59915	59915					0.25116872909620724
VVKIQKLQI	9	Unmodified	_VVKIQKLQI_					0	0	0			REV__ENST00000540870.5_1_2:231086438-231090314:-|nuORF	REV__ENST00000540870.5_1_2:231086438-231090314:-|nuORF	MSMS	A375_MHC_IP_R2	2	356.679443359375	3	356.909498	1067.70667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.91	1	17.507	17.007	18.007	0.59616								0	0	0	0.15486	1	4983	4983		0.26902	0	1		+		61505	25956	44880	45235	59916	59916					0.17552045196180188
VVKKIVLVPL	10	Unmodified	_VVKKIVLVPL_					0	0	0		ENST00000432054.6_1_3:129389356-129389434:-|nuORF	ENST00000432054.6_1_3:129389356-129389434:-|nuORF	ENST00000432054.6_1_3:129389356-129389434:-|nuORF	MSMS	A375_MHC_IP_R1	1	369.77288818359375	3	369.933644	1106.7791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.156	1	17.156	16.656	17.656	0								0	0	0	0.15642	1	4014	4014		0	0	1				61506	11873	44881	45236	59917	59917					0.2299837926973396
VVKKKHRT	8	Unmodified	_VVKKKHRT_					0	0	0		ENSG00000198915|ENST00000395810|RASGEF1A;nc|ENSG00000198915|Q8N9B8-2|RASGEF1A	ENSG00000198915|ENST00000395810|RASGEF1A	ENSG00000198915|ENST00000395810|RASGEF1A	MSMS	A375_MHC_IP_R1	1	498.71832275390625	2	498.327268	994.639983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.84	1	143.84	143.34	144.34	0								0	0	0	0.16876	1	55172	55172		2.5775	0	1				61507	9369	44882	45237	59918	59918					0.1424485442493051
VVKKRGQNIL	10	Unmodified	_VVKKRGQNIL_					0	0	0			REV__ATRX|p.E2333K|1|0.16|ENSG00000085224|chrX:77521477-77521477|C/T|missense_variant	REV__ATRX|p.E2333K|1|0.16|ENSG00000085224|chrX:77521477-77521477|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	385.6319580078125	3	385.583785	1153.72953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.349	1	37.12	36.62	37.62	0.7709								0	0	0	0.15522	1	13244	13244		3.8763	1.033	1		+		61508	15483	44883	45238	59919	59919					0.1588106431365759
VVKKSLITF	9	Unmodified	_VVKKSLITF_					0	0	0		nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	MULTI-SECPEP	A375_MHC_IP_R1	1	518.23388671875	2	517.83406	1033.65357	-0.074318	-3.8485E-05	-0.041609	-2.1547E-05	-0.11593	-6.0031E-05	517.8339612232347	48.767	0.40561	48.767	48.577	48.983	0					17	7	3	0	0	0	0.50484	1	17229	17229		34.932	18.783	1	4424500			61509	8923	44884	45239	59920	59920					0.1380866741351383
VVKKSLITF	9	Unmodified	_VVKKSLITF_					0	0	0		nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	MULTI-SECPEP	A375_MHC_IP_R2	2	518.2335205078125	2	517.83406	1033.65357	-0.5956	-0.00030842	-0.32737	-0.00016952	-0.92297	-0.00047795	517.8338536478608	47.724	0.4069	48.486	48.275	48.682	0.76128					13	7	2	0	0	0	0.63622	1	17920	17920		24.991	11.948	1	3153700			61510	8923	44884	45239	59921	59921					0.1380866741351383
VVKKTLITF	9	Unmodified	_VVKKTLITF_					0	0	0		ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6843872070312	2	524.841885	1047.66922	-0.36227	-0.00019013	-0.24995	-0.00013118	-0.61222	-0.00032132	524.8417123973009	50.059	0.46125	50.059	49.793	50.254	0					17	8	3	0	0	0	0.40377	1	17728	17728		34.932	18.783	1	2074100			61511	9184	44885	45240	59922	59922					0.14728953930534772
VVKKTLITF	9	Unmodified	_VVKKTLITF_					0	0	0		ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-SECPEP	A375_MHC_IP_R2	2	525.241455078125	2	524.841885	1047.66922	-0.64124	-0.00033655	-0.12532	-6.5774E-05	-0.76656	-0.00040233	524.8417772242353	49.009	0.40885	49.767	49.434	49.843	0.75737					12	7	2	0	0	0	0.50484	1	18383	18383		34.932	13.395	1	2204900			61512	9184	44885	45240	59923	59923					0.14728953930534772
VVKKVNAVF	9	Unmodified	_VVKKVNAVF_					0	0	0		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000442060.7_1_5:118862877-118877689:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	502.71826171875	2	502.318577	1002.6226	-0.58357	-0.00029314	0.075982	3.8167E-05	-0.50759	-0.00025497	502.3185554779991	30.834	1.1148	30.834	30.603	31.718	0					54	21	4	0	0	0	0.040439	1	9817	9817		92.822	58.72	1	28606000			61513	4532	44886	45241	59924	59924					0.12139514099271764
VVKKVNAVF	9	Unmodified	_VVKKVNAVF_					0	0	0		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000442060.7_1_5:118862877-118877689:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	502.71807861328125	2	502.318577	1002.6226	-0.84805	-0.00042599	0.18399	9.2423E-05	-0.66406	-0.00033357	502.3185986748021	29.968	0.96272	30.667	30.434	31.397	0.69872					54	18	4	0	0	0	0.05755	1	10486	10486		81.613	41.656	1	21948000			61514	4532	44886	45241	59925	59925					0.12139514099271764
VVKLMVPLLK	10	Unmodified	_VVKLMVPLLK_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6;ENST00000545710.1_1_12:9659830-9660388:-|nuORF;nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5	ENSG00000137040|ENST00000259569|RANBP6;nc|ENSG00000065150|O00410-2|IPO5	ENSG00000137040|ENST00000259569|RANBP6	MSMS	A375_MHC_IP_R1	1	570.8175659179688	2	570.382863	1138.75117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.26	1	118.26	117.76	118.76	0								0	0	0	0.15629	1	43495	43495		0.40072	0	1				61515	4852;1370	44887	45242	59926	59926					0.1873473301800459
VVKNGGLPP	9	Unmodified	_VVKNGGLPP_					0	0	0			REV__ENST00000470487.5_1_3:167813473-167813578:-|nuORF	REV__ENST00000470487.5_1_3:167813473-167813578:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	441.1660461425781	2	440.766178	879.517802	-0.29859	-0.00013161	0.093544	4.1231E-05	-0.20505	-9.0379E-05	440.76603216982795	83.366	0.81368	84.106	83.745	84.559	0.73962					31	15	3	0	0	0	0.32899	1	31666	31666		28.487	5.3384	1	2697300	+		61516	25106	44888	45243	59927	59927					0.07322392622711504
VVKSLDVL	8	Unmodified	_VVKSLDVL_					0	0	0		ZNF433|p.I370Lfs*304|1|0.09|ENSG00000197647|chr19:12015759-12015760|-/GGGAATAG|frameshift_variant	ZNF433|p.I370Lfs*304|1|0.09|ENSG00000197647|chr19:12015759-12015760|-/GGGAATAG|frameshift_variant	ZNF433|p.I370Lfs*304|1|0.09|ENSG00000197647|chr19:12015759-12015760|-/GGGAATAG|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	437.1749267578125	2	436.776211	871.537869	0.12155	5.3091E-05	-2.6015	-0.0011363	-2.4799	-0.0010832	436.7750956097418	127.7	1.0134	127.7	127.42	128.43	0					35	19	2	0	0	0	0.7779	1	48963	48963		2.5775	0	1	45916000			61517	30218	44889	45244	59928	59928					0.0969614356264401
VVKSLEIMKS	10	Unmodified	_VVKSLEIMKS_					0	0	0			REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3	REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3	MULTI-MSMS	A375_MHC_IP_R1	1	378.62548828125	3	378.558137	1132.65258	0.23916	9.0536E-05	2.1517	0.00081455	2.3909	0.00090509	378.55949937207356	27.547	0.50553	27.547	27.28	27.786	0					18	9	3	0	0	0	0.7154	1	8457	8457		5.4027	0.35519	1	1830500	+		61518	21755	44890	45245	59929	59929					0.09156084982282664
VVKSRTSFS	9	Unmodified	_VVKSRTSFS_					0	0	0		ENST00000590096.1_1_19:10654706-10657792:+|nuORF;ENSG00000130734|ENST00000309469|ATG4D	ENST00000590096.1_1_19:10654706-10657792:+|nuORF	ENST00000590096.1_1_19:10654706-10657792:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	506.197265625	2	505.785099	1009.55564	-0.78734	-0.00039822	0.090924	4.5988E-05	-0.69642	-0.00035224	505.78507460323374	27.917	0.45692	28.595	28.401	28.858	0.67857					12	8	2	0	0	0	0.78798	1	9618	9618		3.9444	0	1	2590100			61519	4275	44891	45246	59930	59930					0.05124858817521272
VVKVGGPV	8	Unmodified	_VVKVGGPV_					0	0	0		ENSG00000178921|ENST00000314666|PFAS	ENSG00000178921|ENST00000314666|PFAS	ENSG00000178921|ENST00000314666|PFAS	MULTI-SECPEP	A375_MHC_IP_R2	2	377.10052490234375	2	377.744714	753.474875	0.13566	5.1243E-05	-0.020185	-7.6247E-06	0.11547	4.3619E-05	377.7445782527374	31.538	0.40929	32.257	32.077	32.486	0.71857					10	7	2	0	0	0	0.97144	1	11151	11151		5.2307	0	1	840780			61520	8187	44892	45247	59931	59931					0.08827622565274851
VVLAAFPL	8	Unmodified	_VVLAAFPL_					0	0	0		tr|U7SSP4|U7SSP4_FUSNUCobalttransportproteinCbiNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiNPE=3SV=1	tr|U7SSP4|U7SSP4_FUSNUCobalttransportproteinCbiNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiNPE=3SV=1	tr|U7SSP4|U7SSP4_FUSNUCobalttransportproteinCbiNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiNPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	829.9171752929688	1	829.518202	828.510926	-0.71906	-0.00059648	-0.090007	-7.4662E-05	-0.80907	-0.00067114	829.5178445454054	147.01	0.095551	147.01	146.97	147.07	0					18	10	2	0	0	0	0.77861	1	56219	56219		0	0	1	117390			61521	29642	44893	45248	59932	59932					0.08981079742113707
VVLAICLP	8	Unmodified	_VVLAICLP_					0	0	0		ENST00000335154.9_1_12:50038759-50038969:-|nuORF	ENST00000335154.9_1_12:50038759-50038969:-|nuORF	ENST00000335154.9_1_12:50038759-50038969:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	827.9046630859375	1	827.505923	826.498647	-0.59605	-0.00049324	-0.042184	-3.4908E-05	-0.63823	-0.00052814	827.5055544078261	145.72	0.076141	145.74	145.71	145.79	0.021408					6	4	2	0	0	0	0.77861	1	56855	56855		0	0	1	143640			61522	10804	44894	45249	59933	59933					0.07845720007424006
VVLAICLP	8	Unmodified	_VVLAICLP_					0	0	0		ENST00000335154.9_1_12:50038759-50038969:-|nuORF	ENST00000335154.9_1_12:50038759-50038969:-|nuORF	ENST00000335154.9_1_12:50038759-50038969:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	827.505923	826.498647	-0.72291	-0.00059821	-1.8196	-0.0015058	-2.5425	-0.002104	827.5042943230338	145.71	0.076309	145.71	145.66	145.74	0	-0.016091	-0.00055515	NaN	0	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140140			61523	10804	44894	45249							0.07845720007424006
VVLETLVVV	9	Unmodified	_VVLETLVVV_					0	0	0		ENST00000550482.1_1_12:54676362-54677673:+|nuORF	ENST00000550482.1_1_12:54676362-54677673:+|nuORF	ENST00000550482.1_1_12:54676362-54677673:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	486.2120361328125	2	485.812793	969.611034	-0.16049	-7.7968E-05	-0.92159	-0.00044772	-1.0821	-0.00052569	485.8122059607377	128.46	0.40582	128.46	128.33	128.73	0					11	7	2	0	0	0	0.068175	1	49367	49367		53.576	0	1	10758000			61524	13371	44895	45250	59934	59934					0.12501272285294363
VVLFDPTW	8	Unmodified	_VVLFDPTW_					0	0	0		ENSG00000182150|ENST00000653738|ERCC6L2;nc|ENSG00000182150|Q5T890-2|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	MULTI-SECPEP	A375_MHC_IP_R1	1	488.6169738769531	2	488.760561	975.506569	-0.35448	-0.00017325	-0.59288	-0.00028978	-0.94736	-0.00046303	488.7603247644786	27.502	0.35347	27.502	27.28	27.634	0					12	6	2	0	0	0	0.94479	1	8309	8309		19.439	6.3965	1	1183900			61525	8378	44896	45251	59935	59935					0.01783570528561995
VVLKLCAWK	9	Unmodified	_VVLKLCAWK_					0	0	0			REV__ENST00000432267.2_1_2:96905804-96905945:+|nuORF	REV__ENST00000432267.2_1_2:96905804-96905945:+|nuORF	MSMS	A375_MHC_IP_R2	2	353.77752685546875	3	353.884296	1058.63106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.901	1	16.489	15.989	16.989	0.58774								0	0	0	0.15486	1	4731	4731		0	0	1		+		61526	24714	44897	45252	59936	59936					0.10408744744222531
VVLKRIVTILI	11	Unmodified	_VVLKRIVTILI_					0	0	0			REV__SCN11A|p.G798R|1|0.37|ENSG00000168356|chr3:38896856-38896856|C/T|missense_variant	REV__SCN11A|p.G798R|1|0.37|ENSG00000168356|chr3:38896856-38896856|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	422.954345703125	3	422.967236	1265.87988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.226	1	19.83	19.33	20.33	0.60308								0	0	0	0.1636	1	5883	5883		0	0	1		+		61527	27917	44898	45253	59937	59937					0.25757411252629936
VVLLAQAY	8	Unmodified	_VVLLAQAY_					0	0	0			REV__ENST00000397463.2_1_2:133402612-133403014:-|nuORF	REV__ENST00000397463.2_1_2:133402612-133403014:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	876.9151000976562	1	876.518931	875.511654	-0.62863	-0.00055101	-2.5275	-0.0022154	-3.1561	-0.0027664	876.5166482268486	144.08	0.18753	144.08	143.94	144.12	0					5	3	2	0	0	0	0.77839	1	55276	55276		0.79363	0	1	513650	+		61528	24356	44899	45254	59938	59938					0.06891874391180863
VVLLRPERF	9	Unmodified	_VVLLRPERF_					0	0	0			REV__ENST00000416648.1_1_3:183605526-183606234:+|nuORF	REV__ENST00000416648.1_1_3:183605526-183606234:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	565.1946411132812	2	564.848033	1127.68151	-0.39426	-0.0002227	-0.70669	-0.00039917	-1.101	-0.00062187	564.8475617579487	98.781	0.35659	98.781	98.659	99.015	0					10	6	2	0	0	0	0.79191	1	36259	36259		3.5965	0	1	1097300	+		61529	20821	44900	45255	59939	59939					0.12277990393590699
VVLPAPPAV	9	Unmodified	_VVLPAPPAV_					0	0	0		ENSG00000010017|ENST00000011619|RANBP9	ENSG00000010017|ENST00000011619|RANBP9	ENSG00000010017|ENST00000011619|RANBP9	MULTI-MSMS	A375_MHC_IP_R1	1	862.9172973632812	1	862.539666	861.53239	-0.44648	-0.00038511	0.18626	0.00016066	-0.26022	-0.00022445	862.5398094036634	94.879	0.86671	94.879	94.548	95.415	0					30	16	3	0	0	0	0.33325	1	35008	35008		28.173	7.302	1	8033200			61530	972	44901	45256	59940	59940					0.09608464770838054
VVLPAPPAV	9	Unmodified	_VVLPAPPAV_					0	0	0		ENSG00000010017|ENST00000011619|RANBP9	ENSG00000010017|ENST00000011619|RANBP9	ENSG00000010017|ENST00000011619|RANBP9	MULTI-MATCH	A375_MHC_IP_R2	2		1	862.539666	861.53239	-0.42113	-0.00036324	0.34873	0.00030079	-0.072404	-6.2451E-05	862.5398256675255	94.161	0.81082	94.906	94.463	95.274	0.74474	0.013296	8.219E-05	NaN	28.173	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7283400			61531	972	44901	45256							0.09608464770838054
VVLSEPVL	8	Unmodified	_VVLSEPVL_					0	0	0		ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000150893|Q5SZK8-2|FREM2	ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	MSMS	A375_MHC_IP_R2	2	428.3253173828125	2	428.262936	854.51132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.86	1	134.03	133.53	134.53	0.16487								0	0	0	0.16876	1	52661	52661		5.2307	2.3415	1				61532	5867	44902	45257	59941	59941					0.0782445467133357
VVLSTSTQRWP	11	Unmodified	_VVLSTSTQRWP_					0	0	0		nc|ENSG00000176973|Q8N5H3-2|FAM89B	nc|ENSG00000176973|Q8N5H3-2|FAM89B	nc|ENSG00000176973|Q8N5H3-2|FAM89B	MSMS	A375_MHC_IP_R1	1	637.416748046875	2	637.348594	1272.68264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.779	1	77.779	77.279	78.279	0								0	0	0	0.16203	1	28382	28382		8.1555	1.4324	1				61533	14782	44903	45258	59942	59942					0.05720159971838257
VVLVEPKTAW	10	Unmodified	_VVLVEPKTAW_					0	0	0		nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP	nc|ENSG00000173786|P09543-2|CNP	nc|ENSG00000173786|P09543-2|CNP	MULTI-SECPEP	A375_MHC_IP_R2	2	571.5106811523438	2	571.334424	1140.6543	-0.29436	-0.00016818	0.66027	0.00037723	0.36591	0.00020906	571.3350965300965	75.594	1.2203	76.335	75.875	77.095	0.74052					37	23	3	0	0	0	0.79895	1	28738	28738		32.786	10.049	1	5037000			61534	7829	44904	45259	59943	59943					0.08959462062580315
VVMAYNRYVA	10	Unmodified	_VVMAYNRYVA_					0	0	0		OR4A16|p.D119N|1|0.14|ENSG00000181961|chr11:55343555-55343555|G/A|missense_variant	OR4A16|p.D119N|1|0.14|ENSG00000181961|chr11:55343555-55343555|G/A|missense_variant	OR4A16|p.D119N|1|0.14|ENSG00000181961|chr11:55343555-55343555|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	593.70751953125	2	593.307884	1184.60121	-0.52152	-0.00030942	1.2448	0.00073853	0.72325	0.00042911	593.3080678343462	46.801	0.35586	46.801	46.596	46.952	0					13	6	3	0	0	0	0.91556	1	16458	16458		6.2058	0	1	2889600			61535	15076	44905	45260	59944	59944					0.016297610082574465
VVMFITLL	8	Unmodified	_VVMFITLL_					0	0	0		nc|ENSG00000132406|Q5BJH2-2|TMEM128;ENSG00000132406|ENST00000382753|TMEM128	nc|ENSG00000132406|Q5BJH2-2|TMEM128	nc|ENSG00000132406|Q5BJH2-2|TMEM128	MSMS	A375_MHC_IP_R2	2	468.2929382324219	2	468.285357	934.556161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.274	1	61.019	60.519	61.519	0.74503								0	0	0	0.16876	1	22815	22815		28.173	0	1				61536	4404	44906	45261	59945	59945					0.08626562213021316
VVMPIAHEF	9	Unmodified	_VVMPIAHEF_					0	0	0		nc|ENSG00000108840|Q9UQL6-3|HDAC5;ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-2|HDAC5	nc|ENSG00000108840|Q9UQL6-3|HDAC5	nc|ENSG00000108840|Q9UQL6-3|HDAC5	MULTI-SECPEP	A375_MHC_IP_R1	1	522.1727294921875	2	521.773145	1041.53174	-0.47085	-0.00024568	-0.35714	-0.00018635	-0.82799	-0.00043203	521.7728358774322	77.641	0.66132	77.641	77.336	77.998	0					27	12	4	0	0	0	0.28475	1	28315	28315		48.346	19.859	1	5881300			61537	2843	44907	45262	59946	59946					0.012633020594876143
VVMPIAHEF	9	Unmodified	_VVMPIAHEF_					0	0	0		nc|ENSG00000108840|Q9UQL6-3|HDAC5;ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-2|HDAC5	nc|ENSG00000108840|Q9UQL6-3|HDAC5	nc|ENSG00000108840|Q9UQL6-3|HDAC5	MULTI-SECPEP	A375_MHC_IP_R2	2	522.1724853515625	2	521.773145	1041.53174	-0.59659	-0.00031128	0.13021	6.7938E-05	-0.46638	-0.00024335	521.7731743147883	76.786	0.60839	77.527	77.146	77.755	0.74052					27	11	4	0	0	0	0.16229	1	29122	29122		48.346	19.859	1	9137000			61538	2843	44907	45262	59947	59947					0.012633020594876143
VVNPQPQQW	9	Unmodified	_VVNPQPQQW_					0	0	0		ENSG00000173166|ENST00000319170|RAPH1	ENSG00000173166|ENST00000319170|RAPH1	ENSG00000173166|ENST00000319170|RAPH1	MULTI-SECPEP	A375_MHC_IP_R1	1	548.68310546875	2	548.282723	1094.55089	-0.48226	-0.00026442	-0.29567	-0.00016211	-0.77793	-0.00042653	548.282613376041	57.097	0.5605	57.097	56.855	57.415	0					24	10	3	0	0	0	0.010923	1	20428	20428		141.83	77.59	1	9656900			61539	7773	44908	45263	59948	59948					0.00739974674752375
VVNPQPQQW	9	Unmodified	_VVNPQPQQW_					0	0	0		ENSG00000173166|ENST00000319170|RAPH1	ENSG00000173166|ENST00000319170|RAPH1	ENSG00000173166|ENST00000319170|RAPH1	MULTI-SECPEP	A375_MHC_IP_R2	2	548.6822509765625	2	548.282723	1094.55089	-1.1221	-0.00061523	0.37447	0.00020531	-0.74764	-0.00040992	548.2828801601898	56.376	0.76487	57.126	56.847	57.612	0.75015					34	14	4	0	0	0	0.010819	1	21284	21284		133.7	59.279	1	12392000			61540	7773	44908	45263	59949	59949					0.00739974674752375
VVPESALLIV	10	Unmodified	_VVPESALLIV_					0	0	0		nc|ENSG00000066230|P48764-2|SLC9A3;ENSG00000066230|ENST00000264938|SLC9A3	nc|ENSG00000066230|P48764-2|SLC9A3	nc|ENSG00000066230|P48764-2|SLC9A3	MULTI-SECPEP	A375_MHC_IP_R1	1	519.6737670898438	2	520.323525	1038.6325	-0.62159	-0.00032343	-1.7709	-0.00092146	-2.3925	-0.0012449	520.3224255030145	90.006	0.30401	90.006	89.88	90.184	0					8	5	2	0	0	0	0.92389	1	33076	33076		7.2892	3.6927	1	823860			61541	1406	44909	45264	59950	59950					0.11472657313993295
VVPGGRRE	8	Unmodified	_VVPGGRRE_					0	0	0		ENST00000446001.1_1_6:13486575-13486937:+|nuORF	ENST00000446001.1_1_6:13486575-13486937:+|nuORF	ENST00000446001.1_1_6:13486575-13486937:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	435.2823486328125	2	435.251226	868.487899	-0.041176	-1.7922E-05	0.2438	0.00010612	0.20263	8.8194E-05	435.2512280958006	104.22	6.8161	104.22	102.61	109.42	0					311	133	3	0	0	0	0.77797	2	38000	38000;38049		2.3027	0	1	16984000			61542	12029	44910	45265	59951;59952	59951					0.04839453677379879
VVPIPVVK	8	Unmodified	_VVPIPVVK_					0	0	0		ENSG00000103888|ENST00000394685|CEMIP;CEMIP|p.K1358Q|1|0.31|ENSG00000103888|chr15:80948910-80948910|A/C|missense_variant	ENSG00000103888|ENST00000394685|CEMIP	ENSG00000103888|ENST00000394685|CEMIP	MSMS	A375_MHC_IP_R1	1	425.68768310546875	2	425.791664	849.568775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.1	1	148.1	147.6	148.6	0								0	0	0	0.16876	1	56562	56562		0.79363	0	1				61543	2473	44911	45266	59953	59953					0.13797341667566343
VVPKVRVE	8	Unmodified	_VVPKVRVE_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-6|OBSCN;REV__OBSCN|p.R4794Afs*50|1|0.26|ENSG00000154358|chr1:228319130-228319130|C/-|frameshift_variant	REV__nc|ENSG00000154358|Q5VST9-6|OBSCN	MULTI-SECPEP	A375_MHC_IP_R1	1	463.6951904296875	2	463.295102	924.575651	-0.42192	-0.00019547	0.30193	0.00013988	-0.12	-5.5593E-05	463.29521552646963	52.986	0.45474	52.986	52.744	53.199	0					22	8	3	0	0	0	0.8824	1	18846	18846		16.942	0	1	10117000	+		61544	27298;27637	44912	45267	59954	59954					0.11034654548143408
VVPKVRVE	8	Unmodified	_VVPKVRVE_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-6|OBSCN;REV__OBSCN|p.R4794Afs*50|1|0.26|ENSG00000154358|chr1:228319130-228319130|C/-|frameshift_variant	REV__nc|ENSG00000154358|Q5VST9-6|OBSCN	MULTI-MSMS	A375_MHC_IP_R2	2	463.6947021484375	2	463.295102	924.575651	-0.89581	-0.00041502	0.087472	4.0526E-05	-0.80833	-0.0003745	463.2951067758281	52.025	0.50865	52.777	52.524	53.032	0.75225					21	9	3	0	0	0	0.7256	1	19566	19566		26.884	0	1	9466300	+		61545	27298;27637	44912	45267	59955	59955					0.11034654548143408
VVPKVRVE	8	Unmodified	_VVPKVRVE_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-6|OBSCN;REV__OBSCN|p.R4794Afs*50|1|0.26|ENSG00000154358|chr1:228319130-228319130|C/-|frameshift_variant	REV__nc|ENSG00000154358|Q5VST9-6|OBSCN	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	463.295102	924.575651	-0.89581	-0.00041502	0.087472	4.0526E-05	-0.80833	-0.0003745	463.2951067758281	52.025	0.50865	52.777	52.524	53.032	0.75225	-0.10467	-0.00011606	NaN	26.884	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9466300	+		61546	27298;27637	44912	45267							0.11034654548143408
VVPLVPLT	8	Unmodified	_VVPLVPLT_					0	0	0		TIMELESS|p.A1041V|1|0.23|ENSG00000111602|chr12:56420675-56420675|G/A|missense_variant	TIMELESS|p.A1041V|1|0.23|ENSG00000111602|chr12:56420675-56420675|G/A|missense_variant	TIMELESS|p.A1041V|1|0.23|ENSG00000111602|chr12:56420675-56420675|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	419.6752014160156	2	419.275847	836.537141	-0.22903	-9.6028E-05	-2.5777	-0.0010808	-2.8068	-0.0011768	419.2748659864827	142.09	0.4559	142.09	141.93	142.38	0					13	8	2	0	0	0	0.77842	1	54543	54543		0.69038	0	1	619300			61547	29346	44913	45268	59956	59956					0.1123334891359491
VVPPFLQPE	9	Unmodified	_VVPPFLQPE_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	A375_MHC_IP_R1	1	513.6865234375	2	513.286943	1024.55933	-0.38784	-0.00019908	-0.3674	-0.00018858	-0.75524	-0.00038766	513.2867380371855	105.35	1.168	105.35	105.05	106.21	0					32	22	2	0	0	0	0.050162	1	38635	38635		64.236	30.134	1	5747100		+	61548	582	44914	45269	59957	59957					0.04803528591378381
VVPPFLQPE	9	Unmodified	_VVPPFLQPE_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	A375_MHC_IP_R2	2	513.6869506835938	2	513.286943	1024.55933	-0.69622	-0.00035736	-0.22025	-0.00011305	-0.91648	-0.00047042	513.2868155165946	104.55	0.81645	105.31	104.95	105.77	0.76308					38	15	4	0	0	0	0.022213	1	39529	39529		81.613	53.126	1	8873500		+	61549	582	44914	45269	59958	59958					0.04803528591378381
VVPRRLKLLVH	11	Unmodified	_VVPRRLKLLVH_					0	0	0			REV__nc|ENSG00000188554|Q14596-2|NBR1	REV__nc|ENSG00000188554|Q14596-2|NBR1	MSMS	A375_MHC_IP_R2	2	665.6370849609375	2	665.445706	1328.87686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.98	1	119.59	119.09	120.09	0.60909								0	0	0	0.16353	1	45250	45250		0.35063	0.043601	1		+		61550	22096	44915	45270	59959	59959					0.22557580918442
VVPSRSLG	8	Unmodified	_VVPSRSLG_					0	0	0			REV__KMT2C|p.E4343Kfs*13|1|0.36|ENSG00000055609|chr7:152148900-152148900|C/-|frameshift_variant	REV__KMT2C|p.E4343Kfs*13|1|0.36|ENSG00000055609|chr7:152148900-152148900|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	815.6119995117188	1	814.478128	813.470852	-0.74783	-0.00060909	1.6748	0.0013641	0.92696	0.00075499	814.4793986814038	144.66	0.13844	144.66	144.59	144.72	0					5	3	2	0	0	0	0.77861	1	55468	55468		0	0	1	587410	+		61551	16415	44916	45271	59960	59960					0.056655330715898344
VVPTRNSSK	9	Unmodified	_VVPTRNSSK_					0	0	0			REV__ENST00000531302.5_1_11:133938984-134014985:+|nuORF	REV__ENST00000531302.5_1_11:133938984-134014985:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	494.6837158203125	2	494.282723	986.550893	-0.39478	-0.00019513	-0.13778	-6.8104E-05	-0.53256	-0.00026324	494.2825620672251	118.44	1.2651	119.04	118.44	119.71	0.60909					46	24	3	0	0	0	0.73804	1	44903	44903		3.5965	0.31518	1	21257000	+		61552	20650	44917	45272	59961	59961					0.057079746747604077
VVPWLWFYLL	10	Unmodified	_VVPWLWFYLL_					0	0	0			REV__ENST00000322128.4_1_8:98288239-98288629:-|nuORF	REV__ENST00000322128.4_1_8:98288239-98288629:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	668.7775268554688	2	668.378635	1334.74272	-0.9446	-0.00063135	-0.23644	-0.00015803	-1.181	-0.00078938	668.3781694995125	143.01	0.758	143.01	142.54	143.29	0					30	14	3	0	0	0	0.94819	1	54824	54824		1.8442	0.36234	1	3536000	+		61553	23576	44918	45273	59962	59962					0.0887350237303508
VVPWLWFYLL	10	Unmodified	_VVPWLWFYLL_					0	0	0			REV__ENST00000322128.4_1_8:98288239-98288629:-|nuORF	REV__ENST00000322128.4_1_8:98288239-98288629:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	668.777099609375	2	668.378635	1334.74272	-0.5965	-0.00039869	-0.68397	-0.00045715	-1.2805	-0.00085584	668.377828459359	143.01	0.81049	143.04	142.64	143.45	0.030746					34	15	4	0	0	0	0.94819	1	55874	55874		1.8442	0.36234	1	2980400	+		61554	23576	44918	45273	59963	59963					0.0887350237303508
VVQKISPRHSE	11	Unmodified	_VVQKISPRHSE_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MSMS	A375_MHC_IP_R1	1	427.6417541503906	3	427.242088	1278.70443	-0.36932	-0.00015779	-0.52596	-0.00022471	-0.89528	-0.0003825	427.2418938377513	132.01	1.112	132.01	131.58	132.69	0					35	21	2	0	0	0	0.73809	1	50894	50894		0.40827	0	1	3266900			61555	4973	44919	45274	59964	59964					0.0762296472039452
VVQKISPRHSE	11	Unmodified	_VVQKISPRHSE_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	427.242088	1278.70443	-0.36932	-0.00015779	-0.52596	-0.00022471	-0.89528	-0.0003825	427.2418938377513	132.01	1.112	132.01	131.58	132.69	0	-0.027494	4.6204E-05	NaN	0.40827	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3266900			61556	4973	44919	45274							0.0762296472039452
VVQLHTLNQV	10	Unmodified	_VVQLHTLNQV_					0	0	0			REV__nc|ENSG00000081026|Q5TCQ9-3|MAGI3	REV__nc|ENSG00000081026|Q5TCQ9-3|MAGI3	MULTI-SECPEP	A375_MHC_IP_R1	1	576.1564331054688	2	575.83258	1149.65061	0.18832	0.00010844	-0.30912	-0.000178	-0.1208	-6.9559E-05	575.832355851332	39.037	0.50816	39.037	38.78	39.289	0					21	9	3	0	0	0	0.77204	1	13342	13342		27.629	0	1	7955100	+		61557	16765	44920	45275	59965	59965					0.08176792288691104
VVQLQKKDLI	10	Unmodified	_VVQLQKKDLI_					0	0	0			REV__ENST00000437713.5_1_22:28318163-28320421:+|nuORF	REV__ENST00000437713.5_1_22:28318163-28320421:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	592.420654296875	2	592.374081	1182.73361	-0.37549	-0.00022243	0.19738	0.00011692	-0.17811	-0.00010551	592.3740721974787	149.5	2.4303	149.52	147.58	150.01	0.01825					329	101	5	0	0	0	0.72658	1	57758	57758		0.40072	0	1	4213000	+		61558	24681	44921	45276	59966	59966					0.14955109016705137
VVQLTSDEV	9	Unmodified	_VVQLTSDEV_					0	0	0			REV__nc|ENSG00000186185|Q86Y91-6|KIF18B	REV__nc|ENSG00000186185|Q86Y91-6|KIF18B	MULTI-SECPEP	A375_MHC_IP_R1	1	495.6607360839844	2	495.261122	988.507691	-0.40138	-0.00019879	-0.27999	-0.00013867	-0.68138	-0.00033746	495.2609203896873	55	0.45729	55	54.771	55.228	0					13	8	2	0	0	0	0.3607	1	19650	19650		42.095	7.9921	1	7133600	+		61559	21953	44922	45277	59967	59967					0.012977401068042127
VVQLTSDEV	9	Unmodified	_VVQLTSDEV_					0	0	0			REV__nc|ENSG00000186185|Q86Y91-6|KIF18B	REV__nc|ENSG00000186185|Q86Y91-6|KIF18B	MULTI-SECPEP	A375_MHC_IP_R2	2	495.66107177734375	2	495.261122	988.507691	-0.73476	-0.0003639	-0.29969	-0.00014842	-1.0345	-0.00051232	495.26102180282595	54.27	0.45597	55.021	54.763	55.219	0.75075					14	8	2	0	0	0	0.3607	1	20475	20475		42.095	7.9921	1	5560300	+		61560	21953	44922	45277	59968	59968					0.012977401068042127
VVQLVVRR	8	Unmodified	_VVQLVVRR_					0	0	0		DLG3|p.R211Q|1|0.25|ENSG00000082458|chrX:70449788-70449788|G/A|missense_variant	DLG3|p.R211Q|1|0.25|ENSG00000082458|chrX:70449788-70449788|G/A|missense_variant	DLG3|p.R211Q|1|0.25|ENSG00000082458|chrX:70449788-70449788|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	485.22113037109375	2	484.821818	967.629084	-0.40656	-0.00019711	0.16715	8.1036E-05	-0.23941	-0.00011607	484.8216236109299	147.57	0.25548	147.59	147.48	147.74	0.019897					52	23	3	0	0	0	0.972	1	57354	57354		0.79363	0	1	306150			61561	751	44923	45278	59969	59969					0.14397452050650372
VVQRFVKF	8	Unmodified	_VVQRFVKF_					0	0	0		ENSG00000196911|ENST00000368564|KPNA5	ENSG00000196911|ENST00000368564|KPNA5	ENSG00000196911|ENST00000368564|KPNA5	MSMS	A375_MHC_IP_R1	1	511.8533020019531	2	511.810919	1021.60729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.41	1	147.41	146.91	147.91	0								0	0	0	0.16876	1	56333	56333		0.69038	0	1				61562	9092	44924	45279	59970	59970					0.09734647302082067
VVQRIRLP	8	Unmodified	_VVQRIRLP_					0	0	0		ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	MULTI-MSMS	A375_MHC_IP_R2	2	981.0355834960938	1	980.63636	979.629084	0.18469	0.00018111	-0.63687	-0.00062454	-0.45218	-0.00044343	980.6357170040764	149.54	0.84511	149.56	149.01	149.85	0.01825					53	31	2	0	0	0	0.77861	1	58052	58052		0	0	1	113440			61563	1512	44925	45280	59971	59971					0.13845452050634321
VVQRIRLP	8	Unmodified	_VVQRIRLP_					0	0	0		ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	MULTI-MATCH	A375_MHC_IP_R1	1		1	980.63636	979.629084	-0.19672	-0.00019291	-0.62068	-0.00060866	-0.8174	-0.00080157	980.6357063341464	149.58	1.0956	149.58	148.91	150	0	0.0068043	8.6263E-06	NaN	0	61	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111790			61564	1512	44925	45280							0.13845452050634321
VVQRLLIHI	9	Unmodified	_VVQRLLIHI_					0	0	0		ENST00000495526.5_1_1:40207631-40211283:+|nuORF	ENST00000495526.5_1_1:40207631-40211283:+|nuORF	ENST00000495526.5_1_1:40207631-40211283:+|nuORF	MSMS	A375_MHC_IP_R1	1	545.861328125	2	545.858401	1089.70225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.677	1	92.677	92.177	93.177	0								0	0	0	0.15486	1	34062	34062		5.2307	0	1				61565	12708	44926	45281	59972	59972					0.16098580773268623
VVQYHSPSY	9	Unmodified	_VVQYHSPSY_					0	0	0			REV__ENSG00000183960|ENST00000328405|KCNH8	REV__ENSG00000183960|ENST00000328405|KCNH8	MULTI-MSMS	A375_MHC_IP_R1	1	541.209716796875	2	540.261456	1078.50836	-0.48048	-0.00025958	-0.95162	-0.00051412	-1.4321	-0.00077371	540.2613188829774	51.65	1.0679	51.65	51.017	52.085	0					29	20	3	0	0	0	0.63811	1	18120	18120		12.532	0	1	5345400	+		61566	21790	44927	45282	59973	59973					-0.027754204534630844
VVRFAGNKPD	10	Unmodified	_VVRFAGNKPD_					0	0	0			REV__NPR1|p.E416K|1|0.2|ENSG00000169418|chr1:153682572-153682572|G/A|missense_variant	REV__NPR1|p.E416K|1|0.2|ENSG00000169418|chr1:153682572-153682572|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	368.6051940917969	3	368.204974	1101.59309	-0.216	-7.9534E-05	-0.094097	-3.4647E-05	-0.3101	-0.00011418	368.20498790658326	29.711	0.60478	30.41	30.236	30.84	0.69872					19	11	2	0	0	0	0.77204	1	10432	10432		14.218	0	1	3096400	+		61567	27625	44928	45283	59974	59974					0.046359500831158584
VVRHQLLKT	9	Unmodified	_VVRHQLLKT_					0	0	0		ENSG00000127184|ENST00000247655|COX7C;ENST00000511472.5_1_5:85913768-85915283:+|nuORF	ENSG00000127184|ENST00000247655|COX7C	ENSG00000127184|ENST00000247655|COX7C	MULTI-MSMS	A375_MHC_IP_R1	1	365.6331481933594	3	365.232864	1092.67676	0.11043	4.0333E-05	0.43459	0.00015873	0.54502	0.00019906	365.2329631248867	19.578	0.79191	19.578	19.238	20.03	0					39	15	4	0	0	0	0.0095015	1	4872	4872		107.56	72.631	1	19205000			61568	4079	44929	45284	59975	59975					0.13413106250845885
VVRKCQIMKL	10	Unmodified	_VVRKCQIMKL_					0	0	0			REV__ENST00000564975.5_1_16:68071926-68087642:+|nuORF	REV__ENST00000564975.5_1_16:68071926-68087642:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	407.3131408691406	3	406.578878	1216.7148	-0.2475	-0.00010063	0.12638	5.1382E-05	-0.12112	-4.9247E-05	406.91327801112215	24.137	0.35656	24.781	24.55	24.907	0.64368					12	6	3	0	0	0	0.71881	1	7913	7913		3.8763	0	1	7062800	+		61569	20745	44930	45285	59976	59976					0.11511532849635842
VVRKCQIMKL	10	Unmodified	_VVRKCQIMKL_					0	0	0			REV__ENST00000564975.5_1_16:68071926-68087642:+|nuORF	REV__ENST00000564975.5_1_16:68071926-68087642:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	406.578878	1216.7148	-0.32818	-0.00013343	0.39966	0.00016249	0.071486	2.9065E-05	406.57898390865006	24.843	0.25493	24.843	24.698	24.953	0	0.031112	0.00012245	NaN	3.8763	11	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4562200	+		61570	20745	44930	45285							0.11511532849635842
VVRLQKQLEQV	11	Unmodified	_VVRLQKQLEQV_					0	0	0			REV__APOA5|p.E149K|1|0.14|ENSG00000110243|chr11:116790784-116790784|C/T|missense_variant	REV__APOA5|p.E149K|1|0.14|ENSG00000110243|chr11:116790784-116790784|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	670.5735473632812	2	670.406444	1338.79833	-0.56931	-0.00038167	-0.12752	-8.5491E-05	-0.69683	-0.00046716	670.4066624433349	142.46	1.4231	142.49	141.47	142.89	0.030731					42	27	3	0	0	0	0.73891	1	55485	55485		1.1933	0	1	2607300	+		61571	15423	44931	45286	59977	59977					0.14248683822711428
VVRNFNDKWFD	11	Unmodified	_VVRNFNDKWFD_					0	0	0			REV__tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	REV__tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	MSMS	A375_MHC_IP_R2	2	480.4718322753906	3	480.573726	1438.69935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.765	1	30.464	29.964	30.964	0.69872								0	0	0	0.16313	1	10419	10419		2.4348	0.52841	1		+		61572	28647	44932	45287	59978	59978					-0.0024533914220228326
VVRPRAITI	9	Unmodified	_VVRPRAITI_					0	0	0			REV__tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	REV__tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	1025.0615234375	1	1024.66258	1023.6553	-0.17814	-0.00018254	-0.52317	-0.00053607	-0.70131	-0.0007186	1024.661917665919	149.64	1.4984	149.64	148.51	150	0					82	52	2	0	0	0	0.77827	1	57077	57077		0	0	1	206600	+		61573	28474	44933	45288	59979	59979					0.14441721222112847
VVRRNLVL	8	Unmodified	_VVRRNLVL_					0	0	0		OR52E4|p.G152R|2|0.33|ENSG00000180974|chr11:5884746-5884746|G/A|missense_variant	OR52E4|p.G152R|2|0.33|ENSG00000180974|chr11:5884746-5884746|G/A|missense_variant	OR52E4|p.G152R|2|0.33|ENSG00000180974|chr11:5884746-5884746|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	969.035400390625	1	968.63636	967.629084	-0.24477	-0.0002371	-0.17309	-0.00016766	-0.41786	-0.00040476	968.6359524700766	147.55	0.29652	147.55	147.44	147.74	0					65	27	3	0	0	0	0.77861	1	56363	56363		0	0	1	719800			61574	15088	44934	45289	59980	59980					0.14397452050627635
VVRRNLVL	8	Unmodified	_VVRRNLVL_					0	0	0		OR52E4|p.G152R|2|0.33|ENSG00000180974|chr11:5884746-5884746|G/A|missense_variant	OR52E4|p.G152R|2|0.33|ENSG00000180974|chr11:5884746-5884746|G/A|missense_variant	OR52E4|p.G152R|2|0.33|ENSG00000180974|chr11:5884746-5884746|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	969.0357055664062	1	968.63636	967.629084	0.12425	0.00012035	-0.47077	-0.00045601	-0.34653	-0.00033566	968.6356368767373	147.56	0.28877	147.58	147.49	147.78	0.019897					64	25	4	0	0	0	0.77861	1	57346	57346		0	0	1	558910			61575	15088	44934	45289	59981	59981					0.14397452050627635
VVRRRRRRRLY	11	Unmodified	_VVRRRRRRRLY_					0	0	0		ENST00000554273.1_1_14:50998823-50999316:-|nuORF	ENST00000554273.1_1_14:50998823-50999316:-|nuORF	ENST00000554273.1_1_14:50998823-50999316:-|nuORF	MSMS	A375_MHC_IP_R2	2	793.5107421875	2	793.508558	1585.00256	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.11811	1	0.58855	0.088549	1.0885	0.47044								0	0	0	0.1636	1	42	42		0	0	1				61576	13417	44935	45290	59982	59982					0.23346105547261686
VVRRRRRRRLY	11	Unmodified	_VVRRRRRRRLY_					0	0	0		ENST00000554273.1_1_14:50998823-50999316:-|nuORF	ENST00000554273.1_1_14:50998823-50999316:-|nuORF	ENST00000554273.1_1_14:50998823-50999316:-|nuORF	MSMS	A375_MHC_IP_R2	2	793.5103759765625	2	793.508558	1585.00256	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.0156	1	5.4325	4.9325	5.9325	0.41691								0	0	0	0.16354	1	1609	1609		0.30703	0.30703	1				61577	13417	44935	45290	59983	59983					0.23346105547261686
VVRRWLRWSFF	11	Unmodified	_VVRRWLRWSFF_					0	0	0			REV__ENST00000515255.5_1_4:106629974-106647758:+|nuORF	REV__ENST00000515255.5_1_4:106629974-106647758:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	776.4481201171875	2	776.438412	1550.86227	-0.73831	-0.00057325	0.38924	0.00030222	-0.34907	-0.00027103	776.4383014181726	134.44	0.96269	134.44	134.12	135.08	0					42	18	3	0	0	0	0.73795	1	51891	51891		1.3295	1.0225	1	7211100	+		61578	25632	44936	45291	59984	59984					0.10887508770292698
VVRTTAATTLG	11	Unmodified	_VVRTTAATTLG_					0	0	0			REV__ENST00000472267.5_1_6:30587464-30587587:+|nuORF	REV__ENST00000472267.5_1_6:30587464-30587587:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1090.025634765625	1	1089.62625	1088.61897	-0.25404	-0.00027681	-0.040601	-4.424E-05	-0.29464	-0.00032105	1089.6259809472128	149.4	1.6207	149.4	148.36	149.98	0					80	53	2	0	0	0	0.73934	1	57045	57045		0	0	1	216530	+		61579	25133	44937	45292	59985	59985					0.07820799534738399
VVRTTAATTLG	11	Unmodified	_VVRTTAATTLG_					0	0	0			REV__ENST00000472267.5_1_6:30587464-30587587:+|nuORF	REV__ENST00000472267.5_1_6:30587464-30587587:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1090.0263671875	1	1089.62625	1088.61897	0.28202	0.0003073	-0.29115	-0.00031724	-0.0091244	-9.9422E-06	1089.6256705782362	149.32	1.4922	149.34	148.52	150.01	0.01825					92	57	2	0	0	0	0.73934	1	57974	57974		0	0	1	212050	+		61580	25133	44937	45292	59986	59986					0.07820799534738399
VVRTTAATTLG	11	Unmodified	_VVRTTAATTLG_					0	0	0			REV__ENST00000472267.5_1_6:30587464-30587587:+|nuORF	REV__ENST00000472267.5_1_6:30587464-30587587:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	1089.62625	1088.61897	-0.25404	-0.00027681	-0.040601	-4.424E-05	-0.29464	-0.00032105	1089.6259809472128	149.4	1.6207	149.4	148.36	149.98	0	0.031634	0.00012805	NaN	0	80	53	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216530	+		61581	25133	44937	45292							0.07820799534738399
VVRTTAATTLG	11	Unmodified	_VVRTTAATTLG_					0	0	0			REV__ENST00000472267.5_1_6:30587464-30587587:+|nuORF	REV__ENST00000472267.5_1_6:30587464-30587587:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	1089.62625	1088.61897	0.28202	0.0003073	-0.29115	-0.00031724	-0.0091244	-9.9422E-06	1089.6256705782362	149.32	1.4922	149.34	148.52	150.01	0.01825	-0.031634	-0.00014495	NaN	0	92	57	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212050	+		61582	25133	44937	45292							0.07820799534738399
VVRVRIQKPKV	11	Unmodified	_VVRVRIQKPKV_					0	0	0			REV__OR51A4|p.T297P|1|0.1|ENSG00000205497|chr11:4946212-4946212|T/G|missense_variant	REV__OR51A4|p.T297P|1|0.1|ENSG00000205497|chr11:4946212-4946212|T/G|missense_variant	MSMS	A375_MHC_IP_R2	2	441.3373107910156	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.647	1	18.243	17.743	18.743	0.59616								0	0	0	0.1636	1	5200	5200		0	0	1		+		61583	27676	44938	45293	59987	59987					0.22417277055797058
VVSATVVLLV	10	Unmodified	_VVSATVVLLV_					0	0	0		ENSG00000145217|ENST00000398516|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	MULTI-SECPEP	A375_MHC_IP_R2	2	500.72576904296875	2	500.326068	998.637583	-0.4722	-0.00023625	-0.04218	-2.1104E-05	-0.51438	-0.00025736	500.3259735548706	84.502	0.70972	85.238	84.865	85.574	0.73601					28	13	3	0	0	0	0.16517	1	32112	32112		71.134	6.8973	1	4270000			61584	5542	44939	45294	59988	59988					0.1382096117662286
VVSCFFLAH	9	Unmodified	_VVSCFFLAH_					0	0	0			REV__UNC13C|p.S1730F|2|0.41|ENSG00000137766|chr15:54500866-54500866|C/T|missense_variant	REV__UNC13C|p.S1730F|2|0.41|ENSG00000137766|chr15:54500866-54500866|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	511.6923828125	2	511.760038	1021.50552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.134	1	46.899	46.399	47.399	0.76519								0	0	0	0.15427	1	17270	17270		14.582	0.67564	1		+		61585	28957	44940	45295	59989	59989					-0.004369671120002749
VVSDSIHDL	9	Unmodified	_VVSDSIHDL_					0	0	0		ENST00000308278.12_1_17:635940-641136:+|nuORF	ENST00000308278.12_1_17:635940-641136:+|nuORF	ENST00000308278.12_1_17:635940-641136:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	492.67926025390625	2	492.753464	983.492375	-0.5995	-0.0002954	0.67839	0.00033428	0.078897	3.8877E-05	492.75394318814034	66.814	0.40802	67.55	67.24	67.648	0.73631					12	7	2	0	0	0	0.67483	1	25217	25217		20.454	12.543	1	1112600			61586	10596	44941	45296	59990	59990					-3.126690376120678E-05
VVSEGVPRI	9	Unmodified	_VVSEGVPRI_					0	0	0		ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	MULTI-MSMS	A375_MHC_IP_R1	1	478.68212890625	2	478.282192	954.549831	-0.2551	-0.00012201	-0.16586	-7.9328E-05	-0.42096	-0.00020134	478.2821000121296	47.895	0.50487	47.895	47.668	48.173	0					26	9	3	0	0	0	0.054426	1	16859	16859		62.573	28.171	1	10134000			61587	8733	44942	45297	59991	59991					0.07073760305854648
VVSEGVPRI	9	Unmodified	_VVSEGVPRI_					0	0	0		ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	MULTI-MSMS	A375_MHC_IP_R2	2	478.681884765625	2	478.282192	954.549831	-0.34955	-0.00016718	0.13743	6.573E-05	-0.21212	-0.00010145	478.28220961639676	47.131	0.56087	47.893	47.613	48.174	0.76128					26	10	3	0	0	0	0.054426	1	17610	17610		62.573	28.171	1	8799300			61588	8733	44942	45297	59992	59992					0.07073760305854648
VVSLIGDGQF	10	Unmodified	_VVSLIGDGQF_					0	0	0		ENST00000433017.5_1_7:50516920-50517004:-|nuORF	ENST00000433017.5_1_7:50516920-50517004:-|nuORF	ENST00000433017.5_1_7:50516920-50517004:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	517.7053833007812	2	517.779482	1033.54441	-0.55022	-0.00028489	0.7824	0.00040511	0.23218	0.00012022	517.7799264813839	50.536	0.61102	50.536	50.153	50.764	0					16	11	2	0	0	0	0.59108	1	17764	17764		21.537	6.6987	1	2161600			61589	11887	44943	45298	59993	59993					0.028980367233771176
VVSRLHKI	8	Unmodified	_VVSRLHKI_					0	0	0			REV__nc|ENSG00000181852|Q9H4P4-2|RNF41	REV__nc|ENSG00000181852|Q9H4P4-2|RNF41	MULTI-SECPEP	A375_MHC_IP_R2	2	476.6766052246094	2	476.308544	950.602535	-0.34107	-0.00016245	-0.25057	-0.00011935	-0.59164	-0.0002818	476.3082491240095	147.56	0.3318	147.58	147.48	147.81	0.019913					74	30	4	0	0	0	0.972	1	57392	57392		0	0	1	745120	+		61590	21667	44944	45299	59994	59994					0.12525763159305825
VVSVIKICL	9	Unmodified	_VVSVIKICL_					0	0	0		ENST00000477973.3_2_3:72426341-72426569:-|nuORF	ENST00000477973.3_2_3:72426341-72426569:-|nuORF	ENST00000477973.3_2_3:72426341-72426569:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	974.0103759765625	1	973.611451	972.604174	-0.32257	-0.00031406	-1.1132	-0.0010838	-1.4358	-0.0013979	973.610087866664	23.729	1.3211	24.359	23.675	24.996	0.63015					31	25	2	0	0	0	0.81896	1	7630	7630		0	0	1	3664800			61591	12452	44945	45300	59995	59995					0.1167763613303805
VVTAPKTLAIP	11	Unmodified	_VVTAPKTLAIP_					0	0	0		TMEM81|p.T25A|1|0.15|ENSG00000174529|chr1:205084248-205084248|T/C|missense_variant	TMEM81|p.T25A|1|0.15|ENSG00000174529|chr1:205084248-205084248|T/C|missense_variant	TMEM81|p.T25A|1|0.15|ENSG00000174529|chr1:205084248-205084248|T/C|missense_variant	MSMS	A375_MHC_IP_R2	2	555.39453125	2	555.350074	1108.6856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.79	1	140.84	140.34	141.34	0.04216								0	0	0	0.16302	1	55099	55099		2.9952	0	1				61592	29365	44946	45301	59996	59996					0.13560035096656975
VVTATQRR	8	Unmodified	_VVTATQRR_					0	0	0		ENST00000435805.6_1_10:43047711-43048011:-|nuORF	ENST00000435805.6_1_10:43047711-43048011:-|nuORF	ENST00000435805.6_1_10:43047711-43048011:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	466.1773986816406	2	465.777608	929.540663	-0.46747	-0.00021774	0.69979	0.00032595	0.23232	0.00010821	465.77766589526306	111.29	2.7072	112.02	110.37	113.08	0.73691					133	52	4	0	0	0	0.77717	1	42212	42212		5.2307	0.47466	1	8671100			61593	11917	44947	45302	59997	59997					0.07307411740168845
VVTELAEP	8	Unmodified	_VVTELAEP_					0	0	0			REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF	REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	429.6639709472656	2	429.234376	856.454199	-0.26487	-0.00011369	0.4397	0.00018874	0.17483	7.5044E-05	429.2331189938673	41.878	1.1698	41.878	41.317	42.487	0					29	22	2	0	0	0	0.75322	1	14572	14572		19.439	0	1	2975300	+		61594	20223	44948	45303	59998	59998					0.02022987394957454
VVTFPRAY	8	Unmodified	_VVTFPRAY_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-SECPEP	A375_MHC_IP_R1	1	477.16558837890625	2	476.766178	951.517802	-0.53796	-0.00025648	0.062114	2.9614E-05	-0.47585	-0.00022687	476.76614086735447	57.966	0.55901	57.966	57.669	58.228	0					24	10	3	0	0	0	0.46048	1	20810	20810		54.774	18.307	1	5185100			61595	1565	44949	45304	59999	59999					0.040103926226947806
VVTFPRAY	8	Unmodified	_VVTFPRAY_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-SECPEP	A375_MHC_IP_R2	2	477.1658630371094	2	476.766178	951.517802	-0.92659	-0.00044177	0.15246	7.2689E-05	-0.77413	-0.00036908	476.7661949988243	57.193	0.71229	57.943	57.612	58.324	0.75015					26	13	3	0	0	0	0.69122	1	21593	21593		48.346	11.88	1	6821200			61596	1565	44949	45304	60000	60000					0.040103926226947806
VVTGQPMPSV	10	Unmodified	_VVTGQPMPSV_					0	0	0		nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	MSMS	A375_MHC_IP_R2	2	507.6916809082031	2	507.76806	1013.52157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.644	1	76.385	75.885	76.885	0.74052								0	0	0	0.14862	1	28715	28715		20.454	0.039092	1				61597	14690	44950	45305	60001	60001					0.015346943342592567
VVTIRLDRA	9	Unmodified	_VVTIRLDRA_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	MULTI-MSMS	A375_MHC_IP_R1	1	1043.035400390625	1	1042.63675	1041.62948	-0.19911	-0.0002076	-0.24175	-0.00025206	-0.44086	-0.00045966	1042.6362432850067	145.27	0.36325	145.27	145.11	145.47	0					35	25	2	0	0	0	0.77827	1	55707	55707		0	0	1	191760			61598	1201	44951	45306	60002	60002					0.110328269798174
VVTIRLDRA	9	Unmodified	_VVTIRLDRA_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	MULTI-MSMS	A375_MHC_IP_R2	2	1043.0361328125	1	1042.63675	1041.62948	0.23996	0.00025019	-0.70949	-0.00073974	-0.46953	-0.00048955	1042.6358088711615	145.26	0.41733	145.29	145.09	145.51	0.021408					45	30	2	0	0	0	0.77827	1	56738	56738		0	0	1	282510			61599	1201	44951	45306	60003	60003					0.110328269798174
VVTKIKRTKK	10	Unmodified	_VVTKIKRTKK_					0	0	0			REV__CON__Q9D312	REV__CON__Q9D312	MULTI-SECPEP	A375_MHC_IP_R1	1	1201.465576171875	1	1200.81505	1199.80778	-0.039103	-4.6956E-05	-1.0703	-0.0012853	-1.1094	-0.0013322	1200.814158549871	75.89	0.35287	75.89	75.714	76.067	0					8	6	2	0	0	0	0.95069	1	27678	27678		0	0	1	3157100	+	+	61600	15899	44952	45307	60004	60004					0.21586496898862606
VVVDPIQSV	9	Unmodified	_VVVDPIQSV_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	A375_MHC_IP_R1	1	478.6763610839844	2	478.276575	954.538597	-0.67158	-0.0003212	0.15337	7.3354E-05	-0.51821	-0.00024785	478.2765851703002	84.981	1.1715	84.981	84.545	85.717	0					47	22	3	0	0	0	0.0061124	1	31065	31065		133.05	80.784	1	16098000			61601	3285	44953	45308	60005	60005					0.059509382117198584
VVVDPIQSV	9	Unmodified	_VVVDPIQSV_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	A375_MHC_IP_R2	2	478.6764221191406	2	478.276575	954.538597	-0.46658	-0.00022315	-0.074185	-3.5481E-05	-0.54076	-0.00025863	478.2764940647445	84.192	1.428	84.932	84.407	85.835	0.73962					51	27	4	0	0	0	0.0061124	1	31922	31922		133.05	66.596	1	18445000			61602	3285	44953	45308	60006	60006					0.059509382117198584
VVVGDLVEV	9	Unmodified	_VVVGDLVEV_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1;ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000018625|ENST00000361216|ATP1A2	nc|ENSG00000163399|P05023-3|ATP1A1;ENST00000472488.5_1_1:160085570-160106822:+|nuORF	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	A375_MHC_IP_R1	1	464.7030334472656	2	464.771126	927.527698	-0.17648	-8.2024E-05	-0.21833	-0.00010147	-0.39482	-0.0001835	464.77092912953407	104.62	0.76011	104.62	104.34	105.1	0					17	14	2	0	0	0	0.042197	1	38432	38432		67.344	6.9543	1	2166800			61603	6659;1048	44954	45309	60007	60007					0.06103535837428353
VVVGDLVEV	9	Unmodified	_VVVGDLVEV_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1;ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000018625|ENST00000361216|ATP1A2	nc|ENSG00000163399|P05023-3|ATP1A1;ENST00000472488.5_1_1:160085570-160106822:+|nuORF	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	A375_MHC_IP_R2	2	928.6466064453125	1	928.534975	927.527698	-0.23916	-0.00022207	0.33055	0.00030693	0.091391	8.486E-05	928.5351151664677	103.86	1.1173	104.62	104.3	105.41	0.76428					52	21	4	0	0	0	0.0070665	1	39470	39470		131.3	72.619	1	54073000			61604	6659;1048	44954	45309	60008	60008					0.06103535837428353
VVVGDLVEV	9	Unmodified	_VVVGDLVEV_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1;ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000018625|ENST00000361216|ATP1A2	nc|ENSG00000163399|P05023-3|ATP1A1;ENST00000472488.5_1_1:160085570-160106822:+|nuORF	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-SECPEP	A375_MHC_IP_R2	2	465.1708068847656	2	464.771126	927.527698	-0.57935	-0.00026927	0.25979	0.00012074	-0.31956	-0.00014852	464.7712137388028	103.83	0.65839	104.59	104.35	105	0.76429					21	12	2	0	0	0	0.14105	1	39300	39300		60.39	22.416	1	3805600			61605	6659;1048	44954	45309	60009	60009					0.06103535837428353
VVVGDLVEV	9	Unmodified	_VVVGDLVEV_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1;ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000018625|ENST00000361216|ATP1A2	nc|ENSG00000163399|P05023-3|ATP1A1;ENST00000472488.5_1_1:160085570-160106822:+|nuORF	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MATCH	A375_MHC_IP_R1	1		1	928.534975	927.527698	0.00065902	6.1192E-07	-0.024566	-2.281E-05	-0.023907	-2.2198E-05	928.534856026022	104.67	1.1659	104.67	104.34	105.5	0	0.021253	-0.00021295	NaN	131.3	54	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48501000			61606	6659;1048	44954	45309							0.06103535837428353
VVVILKNRQ	9	Unmodified	_VVVILKNRQ_					0	0	0			REV__nc|ENSG00000117868|A0FGR8-5|ESYT2	REV__nc|ENSG00000117868|A0FGR8-5|ESYT2	MULTI-MSMS	A375_MHC_IP_R1	1	1069.08837890625	1	1068.68879	1067.68151	-0.22985	-0.00024564	-0.18531	-0.00019804	-0.41516	-0.00044368	1068.6883269046546	149.61	1.5487	149.61	148.45	150	0					109	53	3	0	0	0	0.77827	1	57040	57040		0	0	1	368130	+		61607	18023	44955	45310	60010	60010					0.15037990393580003
VVVILKNRQ	9	Unmodified	_VVVILKNRQ_					0	0	0			REV__nc|ENSG00000117868|A0FGR8-5|ESYT2	REV__nc|ENSG00000117868|A0FGR8-5|ESYT2	MULTI-SECPEP	A375_MHC_IP_R1	1	535.05712890625	2	534.848033	1067.68151	-1.0442	-0.00055848	-0.093392	-4.995E-05	-1.1376	-0.00060843	534.8479635533212	149.84	1.347	149.84	148.66	150	0					154	49	4	0	0	0	0.81896	1	56814	56814		0	0	1	495660	+		61608	18023	44955	45310	60011	60011					0.15037990393580003
VVVILKNRQ	9	Unmodified	_VVVILKNRQ_					0	0	0			REV__nc|ENSG00000117868|A0FGR8-5|ESYT2	REV__nc|ENSG00000117868|A0FGR8-5|ESYT2	MULTI-MSMS	A375_MHC_IP_R2	2	1069.088134765625	1	1068.68879	1067.68151	0.26358	0.00028169	-0.46502	-0.00049697	-0.20144	-0.00021528	1068.6879724090597	149.69	1.4922	149.7	148.52	150.01	0.01825					124	57	3	0	0	0	0.77827	1	57992	57992		0	0	1	276900	+		61609	18023	44955	45310	60012	60012					0.15037990393580003
VVVILKNRQ	9	Unmodified	_VVVILKNRQ_					0	0	0			REV__nc|ENSG00000117868|A0FGR8-5|ESYT2	REV__nc|ENSG00000117868|A0FGR8-5|ESYT2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	1068.68879	1067.68151	-0.22985	-0.00024564	-0.18531	-0.00019804	-0.41516	-0.00044368	1068.6883269046546	149.61	1.5487	149.61	148.45	150	0	-0.045847	0.0001922	NaN	0	109	53	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	368130	+		61610	18023	44955	45310							0.15037990393580003
VVVILKNRQ	9	Unmodified	_VVVILKNRQ_					0	0	0			REV__nc|ENSG00000117868|A0FGR8-5|ESYT2	REV__nc|ENSG00000117868|A0FGR8-5|ESYT2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	1068.68879	1067.68151	0.26358	0.00028169	-0.46502	-0.00049697	-0.20144	-0.00021528	1068.6879724090597	149.69	1.4922	149.7	148.52	150.01	0.01825	0.045847	-0.00010672	NaN	0	124	57	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276900	+		61611	18023	44955	45310							0.15037990393580003
VVVIQNQTL	9	Unmodified	_VVVIQNQTL_					0	0	0		ENSG00000188107|ENST00000503581|EYS;nc|ENSG00000188107|Q5T1H1|EYS	ENSG00000188107|ENST00000503581|EYS	ENSG00000188107|ENST00000503581|EYS	MULTI-SECPEP	A375_MHC_IP_R2	2	506.713134765625	2	507.303124	1012.5917	-0.71459	-0.00036251	-0.66461	-0.00033716	-1.3792	-0.00069967	507.8039434384312	83.199	0.40615	83.939	83.745	84.152	0.73962					10	7	2	0	0	0	0.67221	1	31617	31617		13.508	0	1	995840			61612	8883	44956	45311	60013	60013					0.08590315994376851
VVVKCSKGM	9	Unmodified	_VVVKCSKGM_					0	0	0			REV__ENST00000587028.1_1_17:40173595-40173727:+|nuORF	REV__ENST00000587028.1_1_17:40173595-40173727:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	476.1618347167969	2	475.761723	949.508894	-0.4932	-0.00023465	0.86913	0.0004135	0.37593	0.00017885	475.7621458162199	103.81	0.40509	104.57	104.4	104.8	0.76428					13	7	2	0	0	0	0.60917	1	39327	39327		25.399	25.399	1	1566700	+		61613	20835	44957	45312	60014	60014					0.032119596703751085
VVVKCSKGM	9	Unmodified	_VVVKCSKGM_					0	0	0			REV__ENST00000587028.1_1_17:40173595-40173727:+|nuORF	REV__ENST00000587028.1_1_17:40173595-40173727:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	475.761723	949.508894	-0.48014	-0.00022843	1.0373	0.00049352	0.55719	0.00026509	475.7622180459988	104.65	0.20348	104.65	104.54	104.74	0	0.03998	0.00010977	NaN	25.399	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	646890	+		61614	20835	44957	45312							0.032119596703751085
VVVKKIQTR	9	Unmodified	_VVVKKIQTR_					0	0	0		CON__REFSEQ:XP_092267	CON__REFSEQ:XP_092267	CON__REFSEQ:XP_092267	MULTI-SECPEP	A375_MHC_IP_R1	1	1071.1038818359375	1	1070.70444	1069.69716	-0.23189	-0.00024828	-0.10428	-0.00011165	-0.33617	-0.00035993	1070.7040750205217	147.62	0.23198	147.62	147.52	147.75	0					34	21	2	0	0	0	0.81896	1	56401	56401		0	0	1	168010		+	61615	638	44958	45313	60015	60015					0.16510276910616994
VVVKKIQTR	9	Unmodified	_VVVKKIQTR_					0	0	0		CON__REFSEQ:XP_092267	CON__REFSEQ:XP_092267	CON__REFSEQ:XP_092267	MULTI-MATCH	A375_MHC_IP_R2	2		1	1070.70444	1069.69716	0.26533	0.00028409	-0.51784	-0.00055445	-0.25251	-0.00027037	1070.703733049279	147.63	0.20198	147.65	147.57	147.77	0.019913	0.014068	-0.00022224	NaN	0	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123210		+	61616	638	44958	45313							0.16510276910616994
VVVLLLLLII	10	Unmodified	_VVVLLLLLII_					0	0	0		ENSG00000165349|ENST00000374299|SLC7A3	ENSG00000165349|ENST00000374299|SLC7A3	ENSG00000165349|ENST00000374299|SLC7A3	MSMS	A375_MHC_IP_R1	1	554.5579223632812	2	554.409404	1106.80425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.63	1	109.63	109.13	110.13	0								0	0	0	0.15628	1	40206	40206		0.45834	0	1				61617	6944	44959	45314	60016	60016					0.25512434072334145
VVVLSRASRY	10	Unmodified	_VVVLSRASRY_					0	0	0		ACADVL|p.S588Y|1|0.31|ENSG00000072778|chr17:7224820-7224820|C/A|missense_variant	ACADVL|p.S588Y|1|0.31|ENSG00000072778|chr17:7224820-7224820|C/A|missense_variant	ACADVL|p.S588Y|1|0.31|ENSG00000072778|chr17:7224820-7224820|C/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	384.2962341308594	3	383.89614	1148.66659	-0.37459	-0.0001438	0.33069	0.00012695	-0.043901	-1.6853E-05	383.89633340633634	33.264	1.7264	34.016	33.127	34.853	0.75225					96	33	6	0	0	0	0.70027	1	12114	12114		12.175	1.3752	1	249350000			61618	27	44960	45315	60017	60017					0.09820498525618859
VVVNGPSQRF	10	Unmodified	_VVVNGPSQRF_					0	0	0			REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	MULTI-MSMS	A375_MHC_IP_R1	1	368.6049499511719	3	368.204974	1101.59309	-0.046063	-1.6961E-05	0.19222	7.0777E-05	0.14616	5.3816E-05	368.20498783313053	30.494	0.70748	30.494	30.301	31.009	0					22	13	2	0	0	0	0.6502	1	9720	9720		10.899	10.899	1	3075300	+		61619	19865	44961	45316	60018	60018					0.046359500831158584
VVVPQGGGQLW	11	Unmodified	_VVVPQGGGQLW_					0	0	0		ENST00000565328.5_1_16:87762954-87795686:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4	ENST00000565328.5_1_16:87762954-87795686:-|nuORF	ENST00000565328.5_1_16:87762954-87795686:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	570.7140502929688	2	570.314023	1138.61349	-0.21544	-0.00012287	-0.029704	-1.6941E-05	-0.24515	-0.00013981	570.3139529533241	97.415	0.7592	97.415	97.137	97.896	0					24	14	2	0	0	0	0.44636	1	35766	35766		58.679	33.28	1	5345900			61620	2531	44962	45317	60019	60019					0.04973120742965875
VVVPQGGGQLW	11	Unmodified	_VVVPQGGGQLW_					0	0	0		ENST00000565328.5_1_16:87762954-87795686:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4	ENST00000565328.5_1_16:87762954-87795686:-|nuORF	ENST00000565328.5_1_16:87762954-87795686:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	570.7141723632812	2	570.314023	1138.61349	-0.43036	-0.00024544	0.058713	3.3485E-05	-0.37165	-0.00021196	570.3140686171055	96.705	0.90978	97.461	97.064	97.974	0.75586					31	17	3	0	0	0	0.49853	1	36685	36685		65.235	47.089	1	4871400			61621	2531	44962	45317	60020	60020					0.04973120742965875
VVVRLGPV	8	Unmodified	_VVVRLGPV_					0	0	0			REV__nc|ENSG00000114270|Q02388-2|COL7A1	REV__nc|ENSG00000114270|Q02388-2|COL7A1	MULTI-SECPEP	A375_MHC_IP_R1	1	420.17901611328125	2	419.779088	837.543623	-0.1114	-4.6763E-05	0.1122	4.7099E-05	0.00080043	3.36E-07	419.77907188610504	30.84	0.81135	30.84	30.653	31.465	0					33	15	3	0	0	0	0.78043	1	9830	9830		40.449	0	1	12462000	+		61622	17818	44963	45318	60021	60021					0.11835286864993577
VVVRLGPV	8	Unmodified	_VVVRLGPV_					0	0	0			REV__nc|ENSG00000114270|Q02388-2|COL7A1	REV__nc|ENSG00000114270|Q02388-2|COL7A1	MULTI-SECPEP	A375_MHC_IP_R2	2	420.1790466308594	2	419.779088	837.543623	-0.29591	-0.00012422	0.14731	6.1836E-05	-0.1486	-6.2381E-05	419.77910776202555	30.011	0.86238	30.71	30.434	31.297	0.69872					39	16	3	0	0	0	0.64068	1	10503	10503		32.117	0	1	9040000	+		61623	17818	44963	45318	60022	60022					0.11835286864993577
VVVVLTGAALR	11	Unmodified	_VVVVLTGAALR_					0	0	0			REV__ENSG00000148400|ENST00000651671|NOTCH1	REV__ENSG00000148400|ENST00000651671|NOTCH1	MULTI-SECPEP	A375_MHC_IP_R1	1	549.7554931640625	2	549.355691	1096.69683	-0.89629	-0.00049238	-0.29583	-0.00016251	-1.1921	-0.0006549	549.3552285027992	147.53	0.29652	147.53	147.44	147.74	0					52	27	3	0	0	0	1.0015	1	56365	56365		0	0	1	244340	+		61624	19629	44964	45319	60023	60023					0.1523485719076234
VVVVLTGAALR	11	Unmodified	_VVVVLTGAALR_					0	0	0			REV__ENSG00000148400|ENST00000651671|NOTCH1	REV__ENSG00000148400|ENST00000651671|NOTCH1	MULTI-MATCH	A375_MHC_IP_R2	2		2	549.355691	1096.69683	-0.59344	-0.00032601	-0.70652	-0.00038813	-1.3	-0.00071414	549.3549217526233	147.55	0.29762	147.57	147.48	147.78	0.019913	0.017315	-0.00027625	NaN	0	55	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160140	+		61625	19629	44964	45319							0.1523485719076234
VVWLESTPPQ	10	Unmodified	_VVWLESTPPQ_					0	0	0			REV__ENST00000565537.1_1_16:2510121-2510671:+|nuORF	REV__ENST00000565537.1_1_16:2510121-2510671:+|nuORF	MSMS	A375_MHC_IP_R2	2	385.73138427734375	3	385.873001	1154.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.342	1	17.938	17.438	18.438	0.59616								0	0	0	0.15628	1	5094	5094		0.15932	0	1		+		61626	26230	44965	45320	60024	60024					0.02605994786199517
VVYENVSHFL	10	Unmodified	_VVYENVSHFL_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MSMS	A375_MHC_IP_R1	1	603.8821411132812	2	603.811313	1205.60807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.308	1	84.308	83.808	84.808	0								0	0	0	0.14919	1	30875	30875		19.362	4.1135	1				61627	6894	44966	45321	60025	60025					0.013493971604930266
VVYHGVQPIRL	11	Unmodified	_VVYHGVQPIRL_					0	0	0			REV__nc|ENSG00000053747|Q16787-3|LAMA3	REV__nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-MSMS	A375_MHC_IP_R1	1	427.9372253417969	3	427.587307	1279.74009	-0.058082	-2.4835E-05	0.41287	0.00017654	0.35479	0.0001517	427.58735289056824	63.147	0.30769	63.147	62.966	63.274	0					9	5	2	0	0	0	0.73283	1	22756	22756		2.8433	0	1	924410	+		61628	16399	44967	45322	60026	60026					0.11141046968077717
VVYNRLPGMF	10	Unmodified	_VVYNRLPGMF_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;USH2A|p.G3312R|1|0.38|ENSG00000042781|chr1:215798931-215798931|C/T|missense_variant	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	A375_MHC_IP_R2	2	598.2218627929688	2	598.318251	1194.62195	-0.41697	-0.00024948	-1.2643	-0.00075648	-1.6813	-0.001006	598.3169450035139	86.793	0.30508	87.526	87.407	87.712	0.73301					9	5	2	0	0	0	0.83086	1	33044	33044		21.747	5.1808	1	1989200			61629	1177	44968	45323	60027	60027					0.03242351387916642
VVYPWMRKV	9	Unmodified	_VVYPWMRKV_					0	0	0		ENSG00000182742|ENST00000332503|HOXB4	ENSG00000182742|ENST00000332503|HOXB4	ENSG00000182742|ENST00000332503|HOXB4	MULTI-MSMS	A375_MHC_IP_R1	1	393.6231384277344	3	393.2232	1176.64777	0.091928	3.6148E-05	-0.23813	-9.3639E-05	-0.1462	-5.7491E-05	393.22313231919634	59.549	0.60954	59.549	59.295	59.905	0					25	11	3	0	0	0	0.13845	1	21415	21415		43.772	31.598	1	4332800			61630	8431	44969	45324	60028	60028					0.06651245630177982
VVYPWMRKV	9	Unmodified	_VVYPWMRKV_					0	0	0		ENSG00000182742|ENST00000332503|HOXB4	ENSG00000182742|ENST00000332503|HOXB4	ENSG00000182742|ENST00000332503|HOXB4	MULTI-MSMS	A375_MHC_IP_R2	2	393.6231384277344	3	393.2232	1176.64777	-0.5239	-0.00020601	0.46795	0.00018401	-0.055945	-2.1999E-05	393.22323063423573	58.691	0.55928	59.439	59.083	59.642	0.74803					24	10	3	0	0	0	0.22013	1	22168	22168		36.506	24.331	1	4341000			61631	8431	44969	45324	60029	60029					0.06651245630177982
VVYRDLRWRFW	11	Unmodified	_VVYRDLRWRFW_					0	0	0			REV__ENSG00000127995|ENST00000297273|CASD1	REV__ENSG00000127995|ENST00000297273|CASD1	MSMS	A375_MHC_IP_R1	1	532.6456298828125	3	532.624643	1594.8521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.769	1	58.769	58.269	59.269	0								0	0	0	0.16353	1	21116	21116		0.094841	0	1		+		61632	18438	44970	45325	60030	60030					0.07846901045058985
VVYSHDGTE	9	Unmodified	_VVYSHDGTE_					0	0	0		ENSG00000226372|ENST00000441525|DCAF8L1;ENSG00000189186|ENST00000451261|DCAF8L2	ENSG00000226372|ENST00000441525|DCAF8L1	ENSG00000226372|ENST00000441525|DCAF8L1	MULTI-MSMS	A375_MHC_IP_R2	2	504.6648254394531	2	503.727446	1005.44034	-0.59949	-0.00030198	-0.39363	-0.00019828	-0.99312	-0.00050026	503.72748911867603	70.033	0.55976	70.767	70.488	71.048	0.73421					24	10	3	0	0	0	0.68216	1	26477	26477		8.5933	3.3626	1	1962500			61633	9704	44971	45326	60031	60031					-0.062162901041233454
VWAERRIE	8	Unmodified	_VWAERRIE_					0	0	0			REV__ENST00000511309.5_1_5:176730986-176733129:+|nuORF	REV__ENST00000511309.5_1_5:176730986-176733129:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	530.1900024414062	2	529.790715	1057.56688	-0.69618	-0.00036883	-0.12994	-6.884E-05	-0.82612	-0.00043767	529.7905628883966	32.999	0.71014	32.999	32.734	33.445	0					34	13	3	0	0	0	0.76654	1	10685	10685		15.847	1.9411	1	13837000	+		61634	20919	44972	45327	60032	60032					0.04039680911660071
VWALLDQLYR	10	Unmodified	_VWALLDQLYR_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	A375_MHC_IP_R1	1	426.639892578125	3	426.239796	1275.69756	0.37793	0.00016109	-0.41036	-0.00017491	-0.032428	-1.3822E-05	426.23961570365185	49.209	0.45468	49.209	48.933	49.387	0					13	8	2	0	0	0	0.66857	1	17405	17405		15.739	1.5205	1	3307900	+		61635	21494	44973	45328	60033	60033					0.07073651839846207
VWALLDQLYR	10	Unmodified	_VWALLDQLYR_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	426.239796	1275.69756	0.37793	0.00016109	-0.41036	-0.00017491	-0.032428	-1.3822E-05	426.23961570365185	49.209	0.45468	49.209	48.933	49.387	0	0.036736	-0.00016718	NaN	15.739	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3307900	+		61636	21494	44973	45328							0.07073651839846207
VWALLDQLYR	10	Unmodified	_VWALLDQLYR_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	426.239796	1275.69756	-0.14577	-6.2134E-05	-0.17919	-7.6379E-05	-0.32497	-0.00013851	426.2397474529028	48.378	0.55399	49.136	48.829	49.383	0.75737	-0.036736	0.00012841	NaN	15.739	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3158800	+		61637	21494	44973	45328							0.07073651839846207
VWFETIWYR	9	Unmodified	_VWFETIWYR_					0	0	0			REV__nc|ENSG00000172575|O95267-4|RASGRP1	REV__nc|ENSG00000172575|O95267-4|RASGRP1	MSMS	A375_MHC_IP_R1	1	433.7313232421875	3	433.888874	1298.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.132	1	18.132	17.632	18.632	0								0	0	0	0.15486	1	4305	4305		0.26902	0.033176	1		+		61638	21157	44974	45329	60034	60034					0.007416937770358345
VWFVLCFIV	9	Unmodified	_VWFVLCFIV_					0	0	0			REV__nc|ENSG00000140465|P04798-2|CYP1A1	REV__nc|ENSG00000140465|P04798-2|CYP1A1	MULTI-MSMS	A375_MHC_IP_R2	2	563.7102661132812	2	563.311906	1124.60926	-0.846	-0.00047656	-1.1692	-0.00065861	-2.0152	-0.0011352	563.3112545239666	19.93	0.60743	20.54	20.248	20.855	0.61029					18	11	2	0	0	0	0.74477	1	6169	6169		0.6015	0.076735	1	1607800	+		61639	19214	44975	45330	60035	60035					0.051939399956836496
VWHRFWIYFCI	11	Unmodified	_VWHRFWIYFCI_					0	0	0		SLC9A4|p.I258Rfs*44|1|0.47|ENSG00000180251|chr2:102503499-102503500|AT/-|frameshift_variant	SLC9A4|p.I258Rfs*44|1|0.47|ENSG00000180251|chr2:102503499-102503500|AT/-|frameshift_variant	SLC9A4|p.I258Rfs*44|1|0.47|ENSG00000180251|chr2:102503499-102503500|AT/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	785.4591674804688	2	785.394825	1568.7751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.889	1	72.889	72.389	73.389	0								0	0	0	0.16351	1	26528	26528		1.3295	0.9789	1				61640	29197	44976	45331	60036	60036					0.013459665043910718
VWHRFWIYFCI	11	Unmodified	_VWHRFWIYFCI_					0	0	0		SLC9A4|p.I258Rfs*44|1|0.47|ENSG00000180251|chr2:102503499-102503500|AT/-|frameshift_variant	SLC9A4|p.I258Rfs*44|1|0.47|ENSG00000180251|chr2:102503499-102503500|AT/-|frameshift_variant	SLC9A4|p.I258Rfs*44|1|0.47|ENSG00000180251|chr2:102503499-102503500|AT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	524.7130737304688	3	523.932309	1568.7751	-0.58696	-0.00030753	-2.542	-0.0013318	-3.129	-0.0016394	524.2644652210026	52.538	0.56007	52.538	52.336	52.897	0					20	10	3	0	0	0	1.0004	1	18705	18705		2.6312	0	1	1648500			61641	29197	44976	45331	60037	60037					0.013459665043910718
VWHRFWIYFCI	11	Unmodified	_VWHRFWIYFCI_					0	0	0		SLC9A4|p.I258Rfs*44|1|0.47|ENSG00000180251|chr2:102503499-102503500|AT/-|frameshift_variant	SLC9A4|p.I258Rfs*44|1|0.47|ENSG00000180251|chr2:102503499-102503500|AT/-|frameshift_variant	SLC9A4|p.I258Rfs*44|1|0.47|ENSG00000180251|chr2:102503499-102503500|AT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	524.330810546875	3	523.932309	1568.7751	-0.82881	-0.00043424	-2.7266	-0.0014286	-3.5555	-0.0018628	523.9316331115707	51.825	0.56073	52.578	52.372	52.932	0.75225					14	10	2	0	0	0	0.73658	1	19540	19540		2.6312	2.223	1	2440800			61642	29197	44976	45331	60038	60038					0.013459665043910718
VWILLLLSLY	10	Unmodified	_VWILLLLSLY_					0	0	0		nc|ENSG00000113327|P18507-1|GABRG2;ENSG00000113327|ENST00000639213|GABRG2;nc|ENSG00000113327|P18507-3|GABRG2	nc|ENSG00000113327|P18507-1|GABRG2	nc|ENSG00000113327|P18507-1|GABRG2	MSMS	A375_MHC_IP_R1	1	411.65771484375	3	411.593287	1231.75803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.015	1	34.015	33.515	34.515	0								0	0	0	0.15513	1	11163	11163		4.1895	0	1				61643	3142	44977	45332	60039	60039					0.15142369170234815
VWIRGPGF	8	Unmodified	_VWIRGPGF_					0	0	0		ENSG00000143751|ENST00000272091|SDE2;nc|ENSG00000143751|Q6IQ49-2|SDE2	ENSG00000143751|ENST00000272091|SDE2	ENSG00000143751|ENST00000272091|SDE2	MSMS	A375_MHC_IP_R2	2	466.63934326171875	2	466.261062	930.507572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.928	1	22.548	22.048	23.048	0.61932								0	0	0	0.16876	1	6937	6937		6.3541	0.59368	1				61644	5429	44978	45333	60040	60040					0.03953829688134647
VWKRWKKRYFV	11	Unmodified	_VWKRWKKRYFV_					0	0	0		nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;ENSG00000081803|ENST00000449022|CADPS2	nc|ENSG00000081803|Q86UW7-3|CADPS2	nc|ENSG00000081803|Q86UW7-3|CADPS2	MSMS	A375_MHC_IP_R2	2	798.0199584960938	2	798.469712	1594.92487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.274	1	81.019	80.519	81.519	0.74474								0	0	0	0.1636	1	30474	30474		0	0	1				61645	1745	44979	45334	60041	60041					0.1512065483848346
VWLAVLHRV	9	Unmodified	_VWLAVLHRV_					0	0	0		ENSG00000102385|ENST00000395209|DRP2;nc|ENSG00000102385|Q13474-2|DRP2;ENST00000372916.8_1_X:100500413-100506073:+|nuORF	ENSG00000102385|ENST00000395209|DRP2	ENSG00000102385|ENST00000395209|DRP2	MULTI-MSMS	A375_MHC_IP_R2	2	364.9326477050781	3	364.894071	1091.66038	-0.36693	-0.00013389	-3.7365	-0.0013634	-4.1035	-0.0014973	364.8926082026098	28.356	0.15143	29.035	28.909	29.06	0.67857					4	2	2	0	0	0	0.59266	1	9784	9784		15.248	1.3424	1	3368900			61646	2376	44980	45335	60042	60042					0.11822025084757115
VWLFLFVFVVL	11	Unmodified	_VWLFLFVFVVL_					0	0	0			REV__DEFB134|p.D15V|1|0.35|ENSG00000205882|chr8:11996208-11996208|T/A|missense_variant	REV__DEFB134|p.D15V|1|0.35|ENSG00000205882|chr8:11996208-11996208|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	1382.2281494140625	1	1381.82824	1380.82097	-0.36809	-0.00050864	-0.032595	-4.5041E-05	-0.40069	-0.00055368	1381.8279025311406	149.19	1.5533	149.19	148.16	149.72	0					86	33	3	0	0	0	0.73934	1	57004	57004		0	0	1	316690	+		61647	15984	44981	45336	60043	60043					0.14578934958240097
VWLFRGDFV	9	Unmodified	_VWLFRGDFV_					0	0	0		nc|ENSG00000288705|P35504-2|UGT1A5;nc|ENSG00000288705|P35504|UGT1A5;nc|ENSG00000288702|P35503-3|UGT1A3;nc|ENSG00000244474|P22310-2|UGT1A4;nc|ENSG00000288702|P35503|UGT1A3;ENSG00000244474|ENST00000373409|UGT1A4	nc|ENSG00000288705|P35504-2|UGT1A5	nc|ENSG00000288705|P35504-2|UGT1A5	MULTI-SECPEP	A375_MHC_IP_R2	2	380.6049499511719	3	380.206315	1137.59712	-0.16297	-6.1962E-05	-3.3659	-0.0012797	-3.5289	-0.0013417	380.204819389464	35.756	0.55778	36.519	36.132	36.69	0.76338					21	10	3	0	0	0	0.69504	1	13041	13041		12.241	0.06591	1	2900600			61648	14950	44982	45337	60044	60044					0.0338203957683163
VWLLPGGG	8	Unmodified	_VWLLPGGG_					0	0	0			REV__ENSG00000186766|ENST00000388920|FOXI2	REV__ENSG00000186766|ENST00000388920|FOXI2	MSMS	A375_MHC_IP_R1	1	399.746826171875	2	399.729064	797.443575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.152	1	22.152	21.652	22.652	0								0	0	0	0.16876	1	5915	5915		6.3541	0.59368	1		+		61649	21985	44983	45338	60045	60045					0.03675049531193508
VWLLSASIT	9	Unmodified	_VWLLSASIT_					0	0	0		nc|ENSG00000148680|P34969-3|HTR7;nc|ENSG00000148680|P34969-2|HTR7;ENSG00000148680|ENST00000336152|HTR7;HTR7|p.S205F|2|0.42|ENSG00000148680|chr10:90749520-90749520|G/A|missense_variant	nc|ENSG00000148680|P34969-3|HTR7	nc|ENSG00000148680|P34969-3|HTR7	MULTI-SECPEP	A375_MHC_IP_R2	2	495.6871032714844	2	495.286943	988.559333	-0.41945	-0.00020775	0.8501	0.00042105	0.43065	0.0002133	495.2874356228987	42.112	0.56207	42.884	42.605	43.167	0.7724					16	10	2	0	0	0	0.55359	1	15670	15670		21.747	0	1	3297800			61650	5756	44984	45339	60046	60046					0.0645952859136969
VWLPTMPVTS	10	Unmodified	_VWLPTMPVTS_					0	0	0			REV__ENSG00000229292|ENST00000341750|RFPL4AL1	REV__ENSG00000229292|ENST00000341750|RFPL4AL1	MSMS	A375_MHC_IP_R1	1	377.4423828125	3	377.535332	1129.58417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.901	1	39.901	39.401	40.401	0								0	0	0	0.15308	1	13676	13676		6.1918	0	1		+		61651	22704	44985	45340	60047	60047					0.024558404024446645
VWLVLWTV	8	Unmodified	_VWLVLWTV_					0	0	0		CON__Q28085	CON__Q28085	CON__Q28085	MULTI-SECPEP	A375_MHC_IP_R1	1	508.65765380859375	2	508.302396	1014.59024	-0.30453	-0.0001548	-1.469	-0.00074667	-1.7735	-0.00090147	508.3015780437324	78.154	0.45691	78.154	77.895	78.352	0					13	8	2	0	0	0	0.94479	1	28472	28472		13.508	6.7847	1	889310		+	61652	606	44986	45341	60048	60048					0.08352726696273294
VWLWRMNFRFF	11	Unmodified	_VWLWRMNFRFF_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|158|1|anti-sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|158|1|anti-sense	MSMS	A375_MHC_IP_R2	2	801.3064575195312	2	801.413549	1600.81254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.39	1	116.08	115.58	116.58	0.68999								0	0	0	0.16334	1	43493	43493		1.3295	0.9789	1		+		61653	26907	44987	45342	60049	60049					0.03617057769974963
VWRDLWERRPS	11	Unmodified	_VWRDLWERRPS_					0	0	0		ENST00000527483.5_1_10:127395624-127396187:-|nuORF	ENST00000527483.5_1_10:127395624-127396187:-|nuORF	ENST00000527483.5_1_10:127395624-127396187:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	500.99945068359375	3	500.600386	1498.77933	-0.39283	-0.00019665	0.24868	0.00012449	-0.14415	-7.2163E-05	500.5996821355245	55.151	0.55829	55.151	54.873	55.431	0					35	10	4	0	0	0	0.7353	1	19701	19701		3.8459	1.4111	1	13884000			61654	13102	44988	45343	60050	60050					0.04989147251626491
VWRYRATVVGF	11	Unmodified	_VWRYRATVVGF_					0	0	0			REV__SLC34A3|p.M512Hfs*81|1|0.67|ENSG00000198569|chr9:137236143-137236144|-/G|frameshift_variant	REV__SLC34A3|p.M512Hfs*81|1|0.67|ENSG00000198569|chr9:137236143-137236144|-/G|frameshift_variant	MSMS	A375_MHC_IP_R2	2	677.4395751953125	2	677.374946	1352.73534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.925	1	11.423	10.923	11.923	0.49811								0	0	0	0.1636	1	3390	3390		0	0	1		+		61655	22383	44989	45344	60051	60051					0.07308162825279396
VWRYRATVVGF	11	Unmodified	_VWRYRATVVGF_					0	0	0			REV__SLC34A3|p.M512Hfs*81|1|0.67|ENSG00000198569|chr9:137236143-137236144|-/G|frameshift_variant	REV__SLC34A3|p.M512Hfs*81|1|0.67|ENSG00000198569|chr9:137236143-137236144|-/G|frameshift_variant	MSMS	A375_MHC_IP_R2	2	677.7752685546875	2	677.374946	1352.73534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.382	1	11.88	11.38	12.38	0.49811								0	0	0	0.1636	1	3526	3526		0	0	1		+		61656	22383	44989	45344	60052	60052					0.07308162825279396
VWSCCWCLDE	10	Unmodified	_VWSCCWCLDE_					0	0	0		ENSG00000168411|ENST00000361070|RFWD3	ENSG00000168411|ENST00000361070|RFWD3	ENSG00000168411|ENST00000361070|RFWD3	MULTI-MSMS	A375_MHC_IP_R1	1	1243.8583984375	1	1243.45806	1242.45079	-0.36819	-0.00045783	-0.057507	-7.1508E-05	-0.4257	-0.00052934	1243.458464516218	146.14	0.46159	146.14	146.04	146.5	0					175	48	5	0	0	0	0.72747	1	55909	55909		0	0	1	2784600			61657	7298	44990	45345	60053	60053					-0.16074090037250244
VWSCCWCLDE	10	Unmodified	_VWSCCWCLDE_					0	0	0		ENSG00000168411|ENST00000361070|RFWD3	ENSG00000168411|ENST00000361070|RFWD3	ENSG00000168411|ENST00000361070|RFWD3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	1243.45806	1242.45079	-0.36819	-0.00045783	-0.057507	-7.1508E-05	-0.4257	-0.00052934	1243.458464516218	146.14	0.46159	146.14	146.04	146.5	0	-0.048746	0.00035346	NaN	0	175	48	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2784600			61658	7298	44990	45345							-0.16074090037250244
VWSCCWCLDE	10	Unmodified	_VWSCCWCLDE_					0	0	0		ENSG00000168411|ENST00000361070|RFWD3	ENSG00000168411|ENST00000361070|RFWD3	ENSG00000168411|ENST00000361070|RFWD3	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	1243.45806	1242.45079	0.43414	0.00053983	-0.51298	-0.00063787	-0.078841	-9.8035E-05	1243.4578734254287	146.21	0.44826	146.24	146.12	146.57	0.021408	0.048746	-0.00021289	NaN	0	208	55	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2620300			61659	7298	44990	45345							-0.16074090037250244
VWTDPAYFY	9	Unmodified	_VWTDPAYFY_					0	0	0			REV__ENSG00000261949|ENST00000610896|GFY	REV__ENSG00000261949|ENST00000610896|GFY	MULTI-SECPEP	A375_MHC_IP_R1	1	581.1649169921875	2	581.266207	1160.51786	0.040116	2.3318E-05	1.7672	0.0010272	1.8074	0.0010506	581.2672010920039	108.19	0.6591	108.19	107.9	108.56	0					17	12	2	0	0	0	0.74651	1	39677	39677		13.508	13.508	1	1474000	+		61660	22915	44991	45346	60054	60054					-0.05597652167944034
VWVPPMYLWVL	11	Unmodified	_VWVPPMYLWVL_					0	0	0		ENST00000574094.5_1_16:16275679-16317348:-|nuORF;nc|ENSG00000091262|O95255-3|ABCC6;ENSG00000091262|ENST00000205557|ABCC6;ENST00000526069.1_1_16:14915456-14916883:-|nuORF;nc|ENSG00000091262|O95255-2|ABCC6;ENST00000542005.2_1_16:14916664-14918526:-|nuORF	ENST00000574094.5_1_16:16275679-16317348:-|nuORF	ENST00000574094.5_1_16:16275679-16317348:-|nuORF	MSMS	A375_MHC_IP_R2	2	701.7037353515625	2	701.883227	1401.7519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.73	1	118.34	117.84	118.84	0.60909								0	0	0	0.16151	1	44583	44583		10.824	1.28	1				61661	1975	44992	45347	60055	60055					0.06709527667044313
VWVWVCLRRRL	11	Unmodified	_VWVWVCLRRRL_					0	0	0		ENST00000478137.1_1_7:1199695-1199887:-|nuORF	ENST00000478137.1_1_7:1199695-1199887:-|nuORF	ENST00000478137.1_1_7:1199695-1199887:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	496.6929626464844	3	495.958969	1484.85508	-0.72178	-0.00035797	0.35794	0.00017752	-0.36384	-0.00018045	495.9590974578817	139.38	1.8784	139.38	138.2	140.08	0					66	36	3	0	0	0	0.73934	1	53654	53654		0	0	1	3937400			61662	12457	44993	45348	60056	60056					0.1320445289820782
VWVWVCLRRRL	11	Unmodified	_VWVWVCLRRRL_					0	0	0		ENST00000478137.1_1_7:1199695-1199887:-|nuORF	ENST00000478137.1_1_7:1199695-1199887:-|nuORF	ENST00000478137.1_1_7:1199695-1199887:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	743.8344116210938	2	743.434815	1484.85508	-0.88323	-0.00065662	0.57518	0.00042761	-0.30805	-0.00022902	743.4348180234016	148.66	1.5156	148.66	147.8	149.31	0					75	34	3	0	0	0	0.73934	1	56638	56638		0	0	1	388760			61663	12457	44993	45348	60057	60057					0.1320445289820782
VWVWVCLRRRL	11	Unmodified	_VWVWVCLRRRL_					0	0	0		ENST00000478137.1_1_7:1199695-1199887:-|nuORF	ENST00000478137.1_1_7:1199695-1199887:-|nuORF	ENST00000478137.1_1_7:1199695-1199887:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	743.922607421875	2	743.434815	1484.85508	-0.78673	-0.00058488	0.37978	0.00028234	-0.40696	-0.00030255	743.4349372141825	133.1	1.273	133.27	132.38	133.65	0.16487					98	24	5	0	0	0	0.73897	1	52077	52077		0.35063	0	1	126660000			61664	12457	44993	45348	60058	60058					0.1320445289820782
VWVWVCLRRRL	11	Unmodified	_VWVWVCLRRRL_					0	0	0		ENST00000478137.1_1_7:1199695-1199887:-|nuORF	ENST00000478137.1_1_7:1199695-1199887:-|nuORF	ENST00000478137.1_1_7:1199695-1199887:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	496.338134765625	3	495.958969	1484.85508	-0.40215	-0.00019945	0.024224	1.2014E-05	-0.37793	-0.00018744	495.95892408341234	133.11	1.3741	133.28	132.33	133.7	0.16487					130	26	6	0	0	0	0.73897	1	52140	52140		0.094841	0	1	265370000			61665	12457	44993	45348	60059	60059					0.1320445289820782
VWVWVCLRRRL	11	Unmodified	_VWVWVCLRRRL_					0	0	0		ENST00000478137.1_1_7:1199695-1199887:-|nuORF	ENST00000478137.1_1_7:1199695-1199887:-|nuORF	ENST00000478137.1_1_7:1199695-1199887:-|nuORF	MSMS	A375_MHC_IP_R2	2	743.5933837890625	2	743.434815	1484.85508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.38	1	146.4	145.9	146.9	0.019913								0	0	0	0.1636	1	57012	57012		0	0	1				61666	12457	44993	45348	60060	60060					0.1320445289820782
VWYTLSGEP	9	Unmodified	_VWYTLSGEP_					0	0	0			REV__ENSG00000229549|ENST00000287721|TSPY8	REV__ENSG00000229549|ENST00000287721|TSPY8	MULTI-MSMS	A375_MHC_IP_R2	2	526.67431640625	2	526.258382	1050.50221	-0.5286	-0.00027818	-1.0336	-0.00054396	-1.5622	-0.00082214	526.2579311444376	66.913	0.61003	67.649	67.29	67.9	0.73631					24	11	3	0	0	0	0.64808	2	25322	25322;25343		11.64	1.5664	1	3432700	+		61667	22739	44994	45349	60061;60062	60061					-0.0210193868499573
VWYYPLQWWKY	11	Unmodified	_VWYYPLQWWKY_					0	0	0			REV__ENST00000587908.1_1_19:56832840-56833431:-|nuORF	REV__ENST00000587908.1_1_19:56832840-56833431:-|nuORF	MSMS	A375_MHC_IP_R2	2	544.6510009765625	3	544.606367	1630.79727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.451	1	33.188	32.688	33.688	0.73692								0	0	0	0.16336	1	11554	11554		1.2148	0.76031	1		+		61668	17858	44995	45350	60063	60063					0.00710469453792939
VYAQSIYPVNW	11	Unmodified	_VYAQSIYPVNW_					0	0	0			REV__ENSG00000106397|ENST00000223127|PLOD3	REV__ENSG00000106397|ENST00000223127|PLOD3	MSMS	A375_MHC_IP_R1	1	670.2716674804688	2	670.337695	1338.66084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.059	1	79.059	78.559	79.559	0								0	0	0	0.16249	1	28856	28856		5.7319	0	1		+		61669	17446	44996	45351	60064	60064					0.005053552232993752
VYATEPTVQI	10	Unmodified	_VYATEPTVQI_					0	0	0		nc|ENSG00000104299|Q9NV88-3|INTS9;ENSG00000104299|ENST00000521022|INTS9;nc|ENSG00000104299|Q9NV88-2|INTS9;ENST00000520983.5_1_8:28651295-28747426:-|nuORF	nc|ENSG00000104299|Q9NV88-3|INTS9;ENST00000520983.5_1_8:28651295-28747426:-|nuORF	nc|ENSG00000104299|Q9NV88-3|INTS9	MULTI-MSMS	A375_MHC_IP_R1	1	561.1989135742188	2	560.797872	1119.58119	-0.44916	-0.00025189	-0.13591	-7.6217E-05	-0.58507	-0.00032811	560.7977356064265	128.66	0.3062	128.66	128.58	128.89	0					7	5	2	0	0	0	0.62015	1	49486	49486		19.362	2.4196	1	4666800			61670	2494;13004	44997	45352	60065	60065					0.02618288549274439
VYATEPTVQI	10	Unmodified	_VYATEPTVQI_					0	0	0		nc|ENSG00000104299|Q9NV88-3|INTS9;ENSG00000104299|ENST00000521022|INTS9;nc|ENSG00000104299|Q9NV88-2|INTS9;ENST00000520983.5_1_8:28651295-28747426:-|nuORF	nc|ENSG00000104299|Q9NV88-3|INTS9;ENST00000520983.5_1_8:28651295-28747426:-|nuORF	nc|ENSG00000104299|Q9NV88-3|INTS9	MULTI-MATCH	A375_MHC_IP_R2	2		2	560.797872	1119.58119	-0.69763	-0.00039123	-0.67387	-0.0003779	-1.3715	-0.00076913	560.7974684546292	128.44	0.15369	128.68	128.6	128.76	0.23946	0.01098	-7.8477E-06	NaN	19.362	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4052100			61671	2494;13004	44997	45352							0.02618288549274439
VYDCTSSSF	9	Unmodified	_VYDCTSSSF_					0	0	0		ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF	ENSG00000213246|ENST00000225504|SUPT4H1	ENSG00000213246|ENST00000225504|SUPT4H1	MSMS	A375_MHC_IP_R2	2	504.6798400878906	2	504.702583	1007.39061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.862	1	69.597	69.097	70.097	0.73511								0	0	0	0.15486	1	26093	26093		8.5933	2.2392	1				61672	9560	44998	45353	60066	60066					-0.11278741104456458
VYDTFMLKH	9	Unmodified	_VYDTFMLKH_					0	0	0		nc|ENSG00000108840|Q9UQL6-3|HDAC5;ENSG00000108840|ENST00000682912|HDAC5	nc|ENSG00000108840|Q9UQL6-3|HDAC5	nc|ENSG00000108840|Q9UQL6-3|HDAC5	MULTI-SECPEP	A375_MHC_IP_R2	2	577.6428833007812	2	577.289159	1152.56377	-0.47582	-0.00027468	2.2878	0.0013207	1.812	0.0010461	577.7916589179899	71.529	0.35409	72.263	72.162	72.516	0.73421					9	6	2	0	0	0	0.78348	1	27101	27101		7.9102	4.3137	1	1503200			61673	2843	44999	45354	60067	60067					-0.0064133025739465666
VYDTFMMIDE	10	Unmodified	_VYDTFMMIDE_					0	0	0		ENSG00000143479|ENST00000367109|DYRK3;nc|ENSG00000143479|O43781-2|DYRK3;ENST00000489878.1_1_1:206810296-206856326:+|nuORF	ENSG00000143479|ENST00000367109|DYRK3	ENSG00000143479|ENST00000367109|DYRK3	MULTI-MSMS	A375_MHC_IP_R1	1	632.4088745117188	2	632.267232	1262.51991	-0.64844	-0.00040999	-1.2643	-0.00079937	-1.9127	-0.0012094	632.2668413090425	74	0.4565	74	73.74	74.197	0					13	8	3	0	0	0	0.71245	1	26922	26922		6.7232	2.7788	1	1169100			61674	5398	45000	45355	60068	60068					-0.10084727536650462
VYDTIEKINEY	11	Unmodified	_VYDTIEKINEY_					0	0	0			REV__ENSG00000263961|ENST00000331555|RHEX	REV__ENSG00000263961|ENST00000331555|RHEX	MULTI-MSMS	A375_MHC_IP_R1	1	694.242431640625	2	693.843007	1385.67146	-0.54263	-0.0003765	0.0046173	3.2037E-06	-0.53802	-0.0003733	693.8429180504882	77.954	0.61375	77.954	77.588	78.201	0					35	11	4	0	0	0	0.43152	1	28410	28410		36.506	10.485	1	8739100	+		61675	22922	45001	45356	60069	60069					-0.005947069129206284
VYDTIEKINEY	11	Unmodified	_VYDTIEKINEY_					0	0	0			REV__ENSG00000263961|ENST00000331555|RHEX	REV__ENSG00000263961|ENST00000331555|RHEX	MULTI-MSMS	A375_MHC_IP_R2	2	694.242431640625	2	693.843007	1385.67146	-0.69294	-0.00048079	-0.15638	-0.0001085	-0.84932	-0.0005893	693.8428563111642	77.251	0.7088	77.994	77.707	78.416	0.74293					36	13	4	0	0	0	0.33856	1	29298	29298		43.772	11.735	1	10061000	+		61676	22922	45001	45356	60070	60070					-0.005947069129206284
VYDTIEKINEY	11	Unmodified	_VYDTIEKINEY_					0	0	0			REV__ENSG00000263961|ENST00000331555|RHEX	REV__ENSG00000263961|ENST00000331555|RHEX	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	693.843007	1385.67146	-0.54263	-0.0003765	0.0046173	3.2037E-06	-0.53802	-0.0003733	693.8429180504882	77.954	0.61375	77.954	77.588	78.201	0	-0.020085	0.00012155	NaN	43.772	35	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8739100	+		61677	22922	45001	45356							-0.005947069129206284
VYDTIEKINEY	11	Unmodified	_VYDTIEKINEY_					0	0	0			REV__ENSG00000263961|ENST00000331555|RHEX	REV__ENSG00000263961|ENST00000331555|RHEX	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	693.843007	1385.67146	-0.69294	-0.00048079	-0.15638	-0.0001085	-0.84932	-0.0005893	693.8428563111642	77.251	0.7088	77.994	77.707	78.416	0.74293	0.020085	-0.00010186	NaN	43.772	36	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10061000	+		61678	22922	45001	45356							-0.005947069129206284
VYDTVVEDLC	10	Unmodified	_VYDTVVEDLC_					0	0	0		ENSG00000284546|ENST00000640302|SSU72L3;ENSG00000284438|ENST00000524542|SSU72L1;ENSG00000284306|ENST00000640805|SSU72L2;ENSG00000284018|ENST00000639584|SSU72L5;ENSG00000283873|ENST00000638166|SSU72L4;ENSG00000230268|ENST00000473520|SSU72L6	ENSG00000284546|ENST00000640302|SSU72L3	ENSG00000284546|ENST00000640302|SSU72L3	MULTI-SECPEP	A375_MHC_IP_R2	2	577.6429443359375	2	578.265547	1154.51654	-0.1952	-0.00011288	2.8875	0.0016697	2.6923	0.0015569	578.2677239757387	76.157	0.45506	76.897	76.64	77.095	0.74052					13	8	2	0	0	0	0.78945	1	28983	28983		25.399	11.493	1	1261600			61679	9715	45002	45357	60071	60071					-0.054536543190124576
VYEEKLKQF	9	Unmodified	_VYEEKLKQF_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-SECPEP	A375_MHC_IP_R1	1	395.30462646484375	3	395.216768	1182.62847	-0.32137	-0.00012701	-0.35196	-0.0001391	-0.67333	-0.00026611	395.21655898547436	26.588	0.70481	26.588	26.373	27.078	0					22	13	2	0	0	0	0.78353	1	7921	7921		6.1918	0.78914	1	2430200			61680	2743	45003	45358	60072	60072					0.04446567820264136
VYEIGRQF	8	Unmodified	_VYEIGRQF_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	506.6954650878906	2	506.266542	1010.51853	-0.35161	-0.00017801	1.4973	0.00075803	1.1457	0.00058002	506.2672303935132	54.727	0.40619	54.727	54.619	55.025	0					9	7	2	0	0	0	0.93661	1	19637	19637		21.747	11.673	1	891720			61681	1382	45004	45359	60073	60073					0.013691872717686238
VYEYAREQ	8	Unmodified	_VYEYAREQ_					0	0	0			REV__ENSG00000004961|ENST00000380762|HCCS	REV__ENSG00000004961|ENST00000380762|HCCS	MULTI-SECPEP	A375_MHC_IP_R1	1	529.6513671875	2	529.251089	1056.48762	-0.80245	-0.0004247	0.99428	0.00052622	0.19183	0.00010153	529.251751862031	132.97	0.30676	132.97	132.84	133.15	0					7	5	2	0	0	0	0.972	1	51309	51309		4.756	0	1	2577000	+		61682	16106	45005	45360	60074	60074					-0.03836010833151704
VYFPALTSL	9	Unmodified	_VYFPALTSL_					0	0	0		nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9;nc|ENSG00000101194|Q9BYT1-3|SLC17A9;ENST00000488738.5_1_20:61584086-61594126:+|nuORF	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MULTI-MSMS	A375_MHC_IP_R2	2	1010.553955078125	1	1010.55571	1009.54843	-0.029049	-2.9356E-05	0.27266	0.00027554	0.24361	0.00024618	1010.5560462056447	129.1	0.15306	129.34	129.26	129.42	0.23946					4	2	2	0	0	0	0.060021	1	50725	50725		60.39	20.432	1	6984600			61683	2270	45006	45361	60075	60075					0.04404126217082194
VYFPALTSL	9	Unmodified	_VYFPALTSL_					0	0	0		nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9;nc|ENSG00000101194|Q9BYT1-3|SLC17A9;ENST00000488738.5_1_20:61584086-61594126:+|nuORF	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MULTI-MSMS	A375_MHC_IP_R2	2	506.1808166503906	2	505.781493	1009.54843	-0.7668	-0.00038783	-0.23214	-0.00011741	-0.99894	-0.00050525	505.7812483928654	129.1	0.25327	129.34	129.26	129.52	0.23946					9	4	3	0	0	0	0.008207	1	50758	50758		129.2	68.811	1	8827000			61684	2270	45006	45361	60076	60076					0.04404126217082194
VYFQRTVE	8	Unmodified	_VYFQRTVE_					0	0	0			REV__nc|ENSG00000007306|Q14002-2|CEACAM7	REV__nc|ENSG00000007306|Q14002-2|CEACAM7	MULTI-SECPEP	A375_MHC_IP_R1	1	520.6690673828125	2	521.271824	1040.5291	-0.60483	-0.00031528	0.47194	0.00024601	-0.13289	-6.9272E-05	521.2720149777418	65.242	0.40612	65.242	65.005	65.411	0					12	7	2	0	0	0	0.94587	1	23583	23583		20.454	2.3186	1	2277800	+		61685	16154	45007	45362	60077	60077					0.010451699261921021
VYFRSSSQY	9	Unmodified	_VYFRSSSQY_					0	0	0			REV__ENSG00000137801|ENST00000260356|THBS1;REV__ENSG00000186340|ENST00000617924|THBS2	REV__ENSG00000186340|ENST00000617924|THBS2	MSMS	A375_MHC_IP_R1	1	568.689453125	2	568.772188	1135.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.056	1	36.056	35.556	36.556	0								0	0	0	0.15486	1	12036	12036		10.824	0.024421	1		+	+	61686	15876;21965	45008	45363	60078	60078					-0.03252035424748101
VYFTGDPSV	9	Unmodified	_VYFTGDPSV_					0	0	0			REV__TENM1|p.L1508F|1|0.84|ENSG00000009694|chrX:124420750-124420750|G/A|missense_variant	REV__TENM1|p.L1508F|1|0.84|ENSG00000009694|chrX:124420750-124420750|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	492.71661376953125	2	492.737283	983.460012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.075	1	54.075	53.575	54.575	0								0	0	0	0.13141	1	19293	19293		32.305	5.4218	1		+		61687	28091	45009	45364	60079	60079					-0.03237914093381278
VYGEPPGSATY	11	Unmodified	_VYGEPPGSATY_					0	0	0			REV__ENST00000524138.5_1_8:640908-665906:-|nuORF	REV__ENST00000524138.5_1_8:640908-665906:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	570.2031860351562	2	570.764029	1139.5135	-0.7897	-0.00045073	-0.42031	-0.0002399	-1.21	-0.00069063	570.7641148755527	53.604	0.82016	54.355	53.995	54.815	0.75105					40	15	4	0	0	0	0.66658	1	20176	20176		18.146	5.1039	1	9406800	+		61688	17331	45010	45365	60080	60080					-0.05067161381521146
VYGEPRKL	8	Unmodified	_VYGEPRKL_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;MAGEA4|p.T248I|1|0.21|ENSG00000147381|chrX:151924407-151924407|C/T|missense_variant;MAGEC2|p.E272K|1|0.29|ENSG00000046774|chrX:142203174-142203174|C/T|missense_variant	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-SECPEP	A375_MHC_IP_R1	1	481.6764221191406	2	481.276909	960.539266	-0.37316	-0.00017959	-0.36522	-0.00017577	-0.73838	-0.00035537	481.27663014108293	25.28	0.45742	25.28	25.104	25.562	0					14	8	2	0	0	0	0.92636	1	7386	7386		23.148	5.0134	1	3147300			61689	520	45011	45366	60081	60081					0.05741777651417124
VYGEPRKL	8	Unmodified	_VYGEPRKL_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;MAGEA4|p.T248I|1|0.21|ENSG00000147381|chrX:151924407-151924407|C/T|missense_variant;MAGEC2|p.E272K|1|0.29|ENSG00000046774|chrX:142203174-142203174|C/T|missense_variant	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-MATCH	A375_MHC_IP_R2	2		2	481.276909	960.539266	-0.92562	-0.00044548	0.097477	4.6913E-05	-0.82814	-0.00039857	481.2766845123585	24.612	0.30387	25.256	25.11	25.414	0.64368	-0.012294	0.0003018	NaN	23.148	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2144100			61690	520	45011	45366							0.05741777651417124
VYGGPKGL	8	Unmodified	_VYGGPKGL_					0	0	0		nc|ENSG00000213079|Q9UPN6-2|SCAF8;ENSG00000213079|ENST00000367178|SCAF8	nc|ENSG00000213079|Q9UPN6-2|SCAF8	nc|ENSG00000213079|Q9UPN6-2|SCAF8	MULTI-MSMS	A375_MHC_IP_R1	1	396.126708984375	2	395.726521	789.438489	-0.042917	-1.6983E-05	0.5495	0.00021745	0.50658	0.00020047	395.7266638744586	61.661	1.581	61.661	60.77	62.351	0					49	30	2	0	0	0	0.77839	1	22149	22149		0.79363	0	1	6005400			61691	14893	45012	45367	60082	60082					0.03534745668571304
VYHFTFFM	8	Unmodified	_VYHFTFFM_					0	0	0		ENST00000327827.11_1_16:9211589-9211736:+|nuORF	ENST00000327827.11_1_16:9211589-9211736:+|nuORF	ENST00000327827.11_1_16:9211589-9211736:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	545.6915893554688	2	546.254588	1090.49462	-0.64498	-0.00035232	-1.4333	-0.00078295	-2.0783	-0.0011353	546.2536010344411	44.083	0.85901	44.852	44.38	45.239	0.7691					23	16	2	0	0	0	0.972	1	16551	16551		5.7604	0	1	1679600			61692	10743	45013	45368	60083	60083					-0.04700369486272393
VYHHSVWWGK	10	Unmodified	_VYHHSVWWGK_					0	0	0			REV__ENSG00000188735|ENST00000449592|TMEM120B	REV__ENSG00000188735|ENST00000449592|TMEM120B	MULTI-SECPEP	A375_MHC_IP_R2	2	434.2701416015625	3	433.552485	1297.63563	-0.56971	-0.000247	3.1575	0.001369	2.5878	0.001122	433.8885360871304	19.955	0.91203	20.566	20.197	21.109	0.61029					24	17	2	0	0	0	0.92772	1	6108	6108		10.315	5.0184	1	1153800	+		61693	22109	45014	45369	60084	60084					-0.0012865478865933255
VYHPNVKVV	9	Unmodified	_VYHPNVKVV_					0	0	0		ENST00000441170.1_1_4:118496255-118496735:-|nuORF;nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A	ENST00000441170.1_1_4:118496255-118496735:-|nuORF	ENST00000441170.1_1_4:118496255-118496735:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	352.60626220703125	3	352.206315	1053.59712	-0.074798	-2.6344E-05	-0.041378	-1.4574E-05	-0.11618	-4.0918E-05	352.20622272682846	33.918	0.40465	33.918	33.698	34.103	0					18	7	3	0	0	0	0.11436	1	11108	11108		53.404	34.042	1	7277400			61694	3796	45015	45370	60085	60085					0.07246039576853036
VYHPNVKVV	9	Unmodified	_VYHPNVKVV_					0	0	0		ENST00000441170.1_1_4:118496255-118496735:-|nuORF;nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A	ENST00000441170.1_1_4:118496255-118496735:-|nuORF	ENST00000441170.1_1_4:118496255-118496735:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	528.2217407226562	2	527.805834	1053.59712	-0.48152	-0.00025415	-0.45981	-0.00024269	-0.94133	-0.00049684	527.8055578264356	33.873	0.2531	33.873	33.748	34.001	0					6	4	2	0	0	0	0.71541	1	11153	11153		16.942	15.29	1	985460			61695	3796	45015	45370	60086	60086					0.07246039576853036
VYHPNVKVV	9	Unmodified	_VYHPNVKVV_					0	0	0		ENST00000441170.1_1_4:118496255-118496735:-|nuORF;nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A	ENST00000441170.1_1_4:118496255-118496735:-|nuORF	ENST00000441170.1_1_4:118496255-118496735:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	352.6060485839844	3	352.206315	1053.59712	-0.34977	-0.00012319	-0.23282	-8.2002E-05	-0.58259	-0.00020519	352.20613685370927	33.062	0.5103	33.814	33.584	34.095	0.75225					24	9	3	0	0	0	0.11436	1	11799	11799		53.404	38.156	1	8068300			61696	3796	45015	45370	60087	60087					0.07246039576853036
VYHYIWDLYYT	11	Unmodified	_VYHYIWDLYYT_					0	0	0			REV__TPSB2|p.H268Y|1|0.31|ENSG00000197253|chr16:1228676-1228676|G/A|missense_variant	REV__TPSB2|p.H268Y|1|0.31|ENSG00000197253|chr16:1228676-1228676|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	512.4356689453125	3	512.578365	1534.71327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.363	1	22.363	21.863	22.863	0								0	0	0	0.16353	1	5996	5996		0.094841	0.021578	1		+		61697	28154	45016	45371	60088	60088					-0.03270106433751607
VYIDRVRSL	9	Unmodified	_VYIDRVRSL_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-MSMS	A375_MHC_IP_R1	1	374.6204833984375	3	374.220624	1119.64004	0.32295	0.00012085	0.22235	8.3208E-05	0.5453	0.00020406	374.22069521122665	43.829	0.96899	43.829	43.502	44.471	0					55	18	5	0	0	0	0.024574	1	15214	15214		64.927	43.337	1	81136000			61698	6442	45017	45372	60089	60089					0.08500809634278994
VYIDRVRSL	9	Unmodified	_VYIDRVRSL_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-SECPEP	A375_MHC_IP_R1	1	561.227294921875	2	560.827298	1119.64004	-0.49331	-0.00027666	0.33174	0.00018605	-0.16157	-9.0615E-05	560.8274297684383	43.833	0.40631	43.833	43.603	44.01	0					14	7	2	0	0	0	0.51395	1	15245	15245		24.991	8.8419	1	13248000			61699	6442	45017	45372	60090	60090					0.08500809634278994
VYIDRVRSL	9	Unmodified	_VYIDRVRSL_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-MSMS	A375_MHC_IP_R2	2	374.6204833984375	3	374.220624	1119.64004	0.44538	0.00016667	-0.27731	-0.00010378	0.16806	6.2893E-05	374.22051693466034	42.977	1.1622	43.749	43.472	44.634	0.7724					57	22	5	0	0	0	0.035419	1	15965	15965		57.108	35.517	1	82356000			61700	6442	45017	45372	60091	60091					0.08500809634278994
VYIDRVRSL	9	Unmodified	_VYIDRVRSL_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	MULTI-SECPEP	A375_MHC_IP_R2	2	561.2269897460938	2	560.827298	1119.64004	-0.53062	-0.00029759	0.031167	1.7479E-05	-0.49946	-0.00028011	560.8272729922085	42.977	0.50552	43.749	43.523	44.028	0.7724					21	9	3	0	0	0	0.47206	1	16005	16005		34.932	8.6639	1	12572000			61701	6442	45017	45372	60092	60092					0.08500809634278994
VYIEHRLMM	9	Unmodified	_VYIEHRLMM_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-2|MCM7	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MSMS	A375_MHC_IP_R2	2	596.2372436523438	2	596.304287	1190.59402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.083	1	84.822	84.322	85.322	0.73962								0	0	0	0.15486	1	31961	31961		7.9102	0	1				61702	7084	45018	45373	60093	60093					0.006347051361672129
VYILRGATF	9	Unmodified	_VYILRGATF_					0	0	0			REV__ENSG00000021488|ENST00000023064|SLC7A9	REV__ENSG00000021488|ENST00000023064|SLC7A9	MULTI-SECPEP	A375_MHC_IP_R1	1	520.7001342773438	2	520.300384	1038.58622	0.025797	1.3422E-05	-0.61167	-0.00031825	-0.58587	-0.00030483	520.2999899220504	44.752	0.40573	44.752	44.523	44.928	0					12	7	2	0	0	0	0.58271	1	15639	15639		20.454	2.3073	1	2744600	+		61703	16267	45019	45374	60094	60094					0.06846637202556849
VYILRGATF	9	Unmodified	_VYILRGATF_					0	0	0			REV__ENSG00000021488|ENST00000023064|SLC7A9	REV__ENSG00000021488|ENST00000023064|SLC7A9	MULTI-MATCH	A375_MHC_IP_R2	2		2	520.300384	1038.58622	-0.44723	-0.00023269	0.010975	5.7102E-06	-0.43625	-0.00022698	520.3000784520043	43.754	0.4034	44.523	44.278	44.682	0.7691	-0.11441	0.0003922	NaN	20.454	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2194500	+		61704	16267	45019	45374							0.06846637202556849
VYIQRKVEGWA	11	Unmodified	_VYIQRKVEGWA_					0	0	0			REV__nc|ENSG00000086205|Q04609-10|FOLH1	REV__nc|ENSG00000086205|Q04609-10|FOLH1	MSMS	A375_MHC_IP_R1	1	674.8062133789062	2	674.872237	1347.72992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.16	1	102.16	101.66	102.66	0								0	0	0	0.16108	1	37539	37539		13.042	3.6593	1		+		61705	16850	45020	45375	60095	60095					0.0699643924283464
VYIVLFVGFLQ	11	Unmodified	_VYIVLFVGFLQ_					0	0	0			REV__ENSG00000170683|ENST00000642047|OR10A3	REV__ENSG00000170683|ENST00000642047|OR10A3	MSMS	A375_MHC_IP_R1	1	649.3909301757812	2	649.381374	1296.7482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.746	1	96.746	96.246	97.246	0								0	0	0	0.16269	1	35552	35552		2.9952	0	1		+		61706	21013	45021	45376	60096	60096					0.11169181164859765
VYKKQLADY	9	Unmodified	_VYKKQLADY_					0	0	0			REV__nc|ENSG00000143452|Q86X24-5|HORMAD1	REV__nc|ENSG00000143452|Q86X24-5|HORMAD1	MULTI-MSMS	A375_MHC_IP_R2	2	564.8949584960938	2	564.308406	1126.60226	-0.46002	-0.00025959	-0.23034	-0.00012998	-0.69036	-0.00038958	564.3082137897841	83.202	0.66057	83.942	83.645	84.305	0.73962					31	12	3	0	0	0	0.55818	1	31749	31749		16.942	0	1	5772400	+		61707	27270	45022	45377	60097	60097					0.04402298648778924
VYKNAGTRS	9	Unmodified	_VYKNAGTRS_					0	0	0			REV__nc|ENSG00000111834|Q5TD94-3|RSPH4A	REV__nc|ENSG00000111834|Q5TD94-3|RSPH4A	MSMS	A375_MHC_IP_R2	2	498.18798828125	2	498.267073	994.519593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.273	1	74.009	73.509	74.509	0.73541								0	0	0	0.14767	1	27813	27813		25.399	2.2509	1		+		61708	17698	45023	45378	60098	60098					0.02211401640670374
VYKQEQEEEL	10	Unmodified	_VYKQEQEEEL_					0	0	0		ENSG00000059769|ENST00000313525|DNAJC25;nc|ENSG00000059769|Q9H1X3-2|DNAJC25;ENST00000463589.5_1_9:114405367-114415499:+|nuORF	ENSG00000059769|ENST00000313525|DNAJC25	ENSG00000059769|ENST00000313525|DNAJC25	MULTI-MSMS	A375_MHC_IP_R1	1	648.2113647460938	2	647.811707	1293.60886	-0.34842	-0.00022571	-0.59894	-0.000388	-0.94736	-0.00061371	647.8113356378446	24.945	0.60685	24.945	24.597	25.204	0					17	11	2	0	0	0	0.71466	1	7210	7210		5.7319	5.7319	1	6995200			61709	1306	45024	45379	60099	60099					-0.026198529811381377
VYKQEQEEEL	10	Unmodified	_VYKQEQEEEL_					0	0	0		ENSG00000059769|ENST00000313525|DNAJC25;nc|ENSG00000059769|Q9H1X3-2|DNAJC25;ENST00000463589.5_1_9:114405367-114415499:+|nuORF	ENSG00000059769|ENST00000313525|DNAJC25	ENSG00000059769|ENST00000313525|DNAJC25	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	647.811707	1293.60886	-0.34842	-0.00022571	-0.59894	-0.000388	-0.94736	-0.00061371	647.8113356378446	24.945	0.60685	24.945	24.597	25.204	0	-0.044835	-0.00015153	NaN	5.7319	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6995200			61710	1306	45024	45379							-0.026198529811381377
VYKTNLDQF	9	Unmodified	_VYKTNLDQF_					0	0	0			REV__ENSG00000115112|ENST00000263707|TFCP2L1	REV__ENSG00000115112|ENST00000263707|TFCP2L1	MSMS	A375_MHC_IP_R2	2	564.5720825195312	2	564.290214	1126.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.906	1	96.656	96.156	97.156	0.75045								0	0	0	0.15486	1	36423	36423		7.9102	0	1		+		61711	17856	45025	45380	60100	60100					0.007654217520894235
VYLEGIFTGSA	11	Unmodified	_VYLEGIFTGSA_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	A375_MHC_IP_R2	2	578.177734375	2	578.797872	1155.58119	-0.029591	-1.7127E-05	-3.002	-0.0017376	-3.0316	-0.0017547	578.79604703321	43.772	0.6045	44.542	44.228	44.833	0.76909					15	11	2	0	0	0	0.90584	1	16371	16371		22.736	14.581	1	2210800			61712	9114	45026	45381	60101	60101					0.009622885492944988
VYLHDLKT	8	Unmodified	_VYLHDLKT_					0	0	0			REV__ENST00000496314.1_1_13:45009134-45009254:-|nuORF	REV__ENST00000496314.1_1_13:45009134-45009254:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	494.33233642578125	2	494.776742	987.538931	-0.43073	-0.00021312	-0.94069	-0.00046543	-1.3714	-0.00067855	494.7762349489285	132.61	0.15271	132.8	132.71	132.86	0.18365					4	2	2	0	0	0	0.972	1	52137	52137		7.2892	2.0586	1	1642300	+		61713	25458	45027	45382	60102	60102					0.0446635793156247
VYLLNLTGNVL	11	Unmodified	_VYLLNLTGNVL_					0	0	0		ENSG00000181803|ENST00000320704|OR6S1	ENSG00000181803|ENST00000320704|OR6S1	ENSG00000181803|ENST00000320704|OR6S1	MULTI-MSMS	A375_MHC_IP_R1	1	407.3082275390625	3	406.907934	1217.70197	0.036758	1.4957E-05	1.2292	0.00050016	1.2659	0.00051511	406.9080379656655	44.465	0.56466	44.465	44.061	44.626	0					20	10	3	0	0	0	0.59166	1	15500	15500		23.964	0	1	3363800			61714	8363	45028	45383	60103	60103					0.10183116262737713
VYLVKEQVLQ	10	Unmodified	_VYLVKEQVLQ_					0	0	0			REV__ENST00000313543.4_1_7:150211931-150217042:+|nuORF	REV__ENST00000313543.4_1_7:150211931-150217042:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	407.3079833984375	3	406.907934	1217.70197	0.19161	7.7968E-05	0.81441	0.00033139	1.006	0.00040936	406.907807854582	43.635	0.70804	44.404	43.923	44.631	0.7691					19	13	2	0	0	0	0.57453	1	16256	16256		22.775	5.2031	1	4511800	+		61715	23522	45029	45384	60104	60104					0.1018311626276045
VYLWMRKV	8	Unmodified	_VYLWMRKV_					0	0	0		HOXB4|p.P143L|1|0.28|ENSG00000182742|chr17:48577892-48577892|G/A|missense_variant	HOXB4|p.P143L|1|0.28|ENSG00000182742|chr17:48577892-48577892|G/A|missense_variant	HOXB4|p.P143L|1|0.28|ENSG00000182742|chr17:48577892-48577892|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	365.593994140625	3	365.544162	1093.61066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.399	1	45.168	44.668	45.668	0.7691								0	0	0	0.16876	1	16569	16569		11.64	0.81637	1				61716	14131	45030	45385	60105	60105					0.06759574084435371
VYNIQIRY	8	Unmodified	_VYNIQIRY_					0	0	0		ENSG00000043462|ENST00000046794|LCP2	ENSG00000043462|ENST00000046794|LCP2	ENSG00000043462|ENST00000046794|LCP2	MULTI-SECPEP	A375_MHC_IP_R2	2	535.136474609375	2	534.795466	1067.57638	-0.9758	-0.00052185	0.25664	0.00013725	-0.71916	-0.0003846	534.7954267059155	66.189	0.35718	66.927	66.68	67.037	0.73811					9	6	2	0	0	0	0.84748	1	25078	25078		36.044	23.002	1	727710			61717	1180	45031	45386	60106	60106					0.04529449197161739
VYNMFQHQS	9	Unmodified	_VYNMFQHQS_					0	0	0		ENSG00000140470|ENST00000268070|ADAMTS17;nc|ENSG00000140470|Q8TE56-2|ADAMTS17;ENST00000378898.8_1_15:100603866-100879329:-|nuORF	ENSG00000140470|ENST00000268070|ADAMTS17	ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-MSMS	A375_MHC_IP_R1	1	385.9093933105469	3	385.174686	1152.50223	0.33065	0.00012736	-0.26553	-0.00010227	0.065125	2.5085E-05	385.1744127952742	97.855	0.56081	97.855	97.54	98.101	0					23	10	3	0	0	0	0.69884	1	35966	35966		7.1017	7.1017	1	2253900			61718	5157	45032	45387	60107	60107					-0.06792261956638868
VYNNCCYYC	9	Unmodified	_VYNNCCYYC_					0	0	0			REV__ENSG00000163820|ENST00000296137|FYCO1	REV__ENSG00000163820|ENST00000296137|FYCO1	MSMS	A375_MHC_IP_R1	1	572.6792602539062	2	572.698463	1143.38237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.243	1	80.243	79.743	80.743	0								0	0	0	0.15486	1	29298	29298		4.756	1.8668	1		+		61719	20419	45033	45388	60108	60108					-0.18358334617073524
VYNNCCYYC	9	Unmodified	_VYNNCCYYC_					0	0	0			REV__ENSG00000163820|ENST00000296137|FYCO1	REV__ENSG00000163820|ENST00000296137|FYCO1	MSMS	A375_MHC_IP_R1	1	572.6876831054688	2	572.698463	1143.38237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.228	1	81.228	80.728	81.728	0								0	0	0	0.15486	1	29682	29682		2.3027	0	1		+		61720	20419	45033	45388	60109	60109					-0.18358334617073524
VYNNCCYYC	9	Unmodified	_VYNNCCYYC_					0	0	0			REV__ENSG00000163820|ENST00000296137|FYCO1	REV__ENSG00000163820|ENST00000296137|FYCO1	MSMS	A375_MHC_IP_R2	2	572.688232421875	2	572.698463	1143.38237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.485	1	82.228	81.728	82.728	0.74293								0	0	0	0.15486	1	30945	30945		2.3027	0	1		+		61721	20419	45033	45388	60110	60110					-0.18358334617073524
VYPDGIRHI	9	Unmodified	_VYPDGIRHI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	A375_MHC_IP_R1	1	357.59765625	3	357.197819	1068.57163	-0.043621	-1.5581E-05	-0.48277	-0.00017244	-0.52639	-0.00018803	357.1976877009491	36.271	0.55707	36.271	35.932	36.489	0					31	10	4	0	0	0	0.026268	1	12094	12094		61.602	34.379	1	15435000			61722	8958	45034	45389	60111	60111					0.04008565054414248
VYPDGIRHI	9	Unmodified	_VYPDGIRHI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-SECPEP	A375_MHC_IP_R2	2	535.6925659179688	2	535.293091	1068.57163	-1.0738	-0.00057481	-0.81663	-0.00043714	-1.8904	-0.0010119	535.2932549534121	35.386	0.40392	36.15	35.929	36.333	0.76338					20	7	4	0	0	0	0.65527	1	12839	12839		22.736	3.4793	1	5332000			61723	8958	45034	45389	60112	60112					0.04008565054414248
VYPFPGPIPN	10	Unmodified	_VYPFPGPIPN_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-SECPEP	A375_MHC_IP_R1	1	551.1922607421875	2	550.792392	1099.57023	-0.28994	-0.0001597	0.22962	0.00012647	-0.060319	-3.3223E-05	550.7925014159682	108.85	0.86177	108.85	108.41	109.27	0					23	16	2	0	0	0	0.028105	1	39913	39913		85.357	49.23	1	2325600		+	61724	582	45035	45390	60113	60113					0.024429309656625264
VYPFPGPIPN	10	Unmodified	_VYPFPGPIPN_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-SECPEP	A375_MHC_IP_R2	2	551.1925659179688	2	550.792392	1099.57023	-0.78601	-0.00043293	-1.7897	-0.00098573	-2.5757	-0.0014187	550.7925508993245	108.13	0.7166	108.88	108.51	109.22	0.75436					26	13	3	0	0	0	0.043676	1	40831	40831		81.613	55.345	1	2426500		+	61725	582	45035	45390	60114	60114					0.024429309656625264
VYRDQMSC	8	Unmodified	_VYRDQMSC_					0	0	0			REV__ENST00000512755.1_1_13:33101488-33110480:-|nuORF	REV__ENST00000512755.1_1_13:33101488-33110480:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	501.6124572753906	2	501.212595	1000.41064	-0.62575	-0.00031364	0.74391	0.00037286	0.11816	5.9223E-05	501.2129018845101	31.34	0.86504	32.059	31.821	32.686	0.71857					46	16	4	0	0	0	0.96266	1	11049	11049		11.64	0	1	45036000	+		61726	22828	45036	45391	60115	60115					-0.08955268645479464
VYRLVEAY	8	Unmodified	_VYRLVEAY_					0	0	0			REV__ENSG00000171497|ENST00000307720|PPID	REV__ENSG00000171497|ENST00000307720|PPID	MSMS	A375_MHC_IP_R2	2	506.69525146484375	2	506.776742	1011.53893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.232	1	54.983	54.483	55.483	0.75075								0	0	0	0.16876	1	20469	20469		16.942	1.1741	1		+		61727	21071	45037	45392	60116	60116					0.03362357931564475
VYRYIIEWLRL	11	Unmodified	_VYRYIIEWLRL_					0	0	0			REV__nc|ENSG00000161905|P16050-2|ALOX15	REV__nc|ENSG00000161905|P16050-2|ALOX15	MULTI-SECPEP	A375_MHC_IP_R1	1	382.3033447265625	4	381.723781	1522.86602	0.67208	0.00025655	-0.64481	-0.00024614	0.027269	1.0409E-05	381.9742003157411	22.139	0.45844	22.139	21.757	22.216	0					10	8	2	0	0	0	1.0015	1	5870	5870		0	0	1	1263400	+		61728	20222	45038	45393	60117	60117					0.1255013375348426
VYSCDHHF	8	Unmodified	_VYSCDHHF_					0	0	0		CON__Q28085	CON__Q28085	CON__Q28085	MULTI-MSMS	A375_MHC_IP_R1	1	504.6797180175781	2	504.205627	1006.3967	0.071347	3.5973E-05	1.1957	0.00060288	1.2671	0.00063885	504.20682138823554	69.757	0.25304	69.757	69.579	69.832	0					8	4	2	0	0	0	0.77686	1	25342	25342		6.3541	0	1	742190		+	61729	606	45039	45394	60118	60118					-0.1062417808226428
VYSQILRKL	9	Unmodified	_VYSQILRKL_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MULTI-MSMS	A375_MHC_IP_R1	1	374.2767639160156	3	373.901003	1118.68118	0.20068	7.5034E-05	-0.17174	-6.4213E-05	0.028941	1.0821E-05	373.90091066729	52.764	0.50819	52.764	52.438	52.946	0					23	9	3	0	0	0	0.41879	2	18771	18771;18841		23.79	9.3844	1	1852800			61730	3964	45040	45395	60119;60120	60119					0.1265857067376146
VYSQILRKL	9	Unmodified	_VYSQILRKL_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MULTI-MSMS	A375_MHC_IP_R2	2	374.30096435546875	3	373.901003	1118.68118	0.096807	3.6196E-05	-0.0088888	-3.3235E-06	0.087918	3.2873E-05	373.9008381855758	51.78	0.56123	52.532	52.27	52.831	0.75225					19	10	3	0	0	0	0.31062	2	19502	19502;19553		29.841	13.691	1	3108800			61731	3964	45040	45395	60121;60122	60121					0.1265857067376146
VYSSRSKVY	9	Unmodified	_VYSSRSKVY_					0	0	0		ENSG00000085998|ENST00000371984|POMGNT1;nc|ENSG00000085998|Q8WZA1-2|POMGNT1	ENSG00000085998|ENST00000371984|POMGNT1	ENSG00000085998|ENST00000371984|POMGNT1	MULTI-SECPEP	A375_MHC_IP_R2	2	545.1534423828125	2	544.790381	1087.56621	-0.75892	-0.00041345	-0.20943	-0.00011409	-0.96835	-0.00052755	544.7905650142716	41.959	0.46059	42.734	42.555	43.016	0.77451					12	8	2	0	0	0	0.73363	1	15649	15649		15.847	9.6414	1	2484400			61732	1824	45041	45396	60123	60123					0.025928414719601278
VYTPISNLT	9	Unmodified	_VYTPISNLT_					0	0	0		ENSG00000154262|ENST00000284425|ABCA6;nc|ENSG00000154262|Q8N139-2|ABCA6;nc|ENSG00000154262|Q8N139-3|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	MULTI-MSMS	A375_MHC_IP_R2	2	1009.4566650390625	1	1007.54079	1006.53351	0.2396	0.00024141	0.55805	0.00056226	0.79765	0.00080367	1007.5410247972848	99.41	1.2202	100.17	99.758	100.98	0.75977					44	23	3	0	0	0	0.4867	1	37790	37790		20.454	2.3073	1	14967000			61733	6076	45042	45397	60124	60124					0.030506343490856125
VYTPISNLT	9	Unmodified	_VYTPISNLT_					0	0	0		ENSG00000154262|ENST00000284425|ABCA6;nc|ENSG00000154262|Q8N139-2|ABCA6;nc|ENSG00000154262|Q8N139-3|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	MULTI-MATCH	A375_MHC_IP_R1	1		1	1007.54079	1006.53351	0.20978	0.00021136	0.71387	0.00071925	0.92365	0.00093061	1007.5412293629815	100.19	0.96301	100.19	99.925	100.89	0	0.0088361	4.5782E-05	NaN	20.454	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18816000			61734	6076	45042	45397							0.030506343490856125
VYTSKSDVW	9	Unmodified	_VYTSKSDVW_					0	0	0		nc|ENSG00000167601|P30530-2|AXL;ENSG00000167601|ENST00000301178|AXL;ENSG00000153208|ENST00000295408|MERTK;AXL|p.D723N|1|0.36|ENSG00000167601|chr19:41256582-41256582|G/A|missense_variant	nc|ENSG00000167601|P30530-2|AXL	nc|ENSG00000167601|P30530-2|AXL	MULTI-SECPEP	A375_MHC_IP_R1	1	543.2107543945312	2	542.769114	1083.52368	-0.89471	-0.00048562	0.7629	0.00041408	-0.13181	-7.1541E-05	542.7697471058208	41.638	0.35823	41.638	41.47	41.828	0					12	6	3	0	0	0	0.57304	1	14376	14376		29.841	7.1043	1	1164800			61735	7198	45043	45398	60125	60125					-0.014745536562941197
VYTSKSDVW	9	Unmodified	_VYTSKSDVW_					0	0	0		nc|ENSG00000167601|P30530-2|AXL;ENSG00000167601|ENST00000301178|AXL;ENSG00000153208|ENST00000295408|MERTK;AXL|p.D723N|1|0.36|ENSG00000167601|chr19:41256582-41256582|G/A|missense_variant	nc|ENSG00000167601|P30530-2|AXL	nc|ENSG00000167601|P30530-2|AXL	MULTI-MATCH	A375_MHC_IP_R2	2		2	542.769114	1083.52368	-1.0574	-0.00057393	1.2335	0.00066949	0.17607	9.5565E-05	543.2714545683217	40.983	0.40691	41.758	41.438	41.845	0.77451	0.060196	0.00030253	NaN	29.841	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	942470			61736	7198	45043	45398							-0.014745536562941197
VYVTSQHWWYL	11	Unmodified	_VYVTSQHWWYL_					0	0	0			REV__ENST00000512760.5_1_4:79841695-79860421:-|nuORF	REV__ENST00000512760.5_1_4:79841695-79860421:-|nuORF	MSMS	A375_MHC_IP_R2	2	494.6610412597656	3	494.578588	1480.71394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.699	1	83.442	82.942	83.942	0.74293								0	0	0	0.16301	1	31417	31417		3.0723	0.22898	1		+		61737	25629	45044	45399	60126	60126					-0.007192669940423002
VYWEKRRKNNE	11	Unmodified	_VYWEKRRKNNE_					0	0	0		ENSG00000268480|ENST00000691075|NFILZ	ENSG00000268480|ENST00000691075|NFILZ	ENSG00000268480|ENST00000691075|NFILZ	MSMS	A375_MHC_IP_R2	2	761.4609985351562	2	761.399681	1520.78481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.597	1	99.357	98.857	99.857	0.75977								0	0	0	0.16203	1	37404	37404		8.1555	4.8742	1				61738	9972	45045	45400	60127	60127					0.04524826043439134
VYYSPETI	8	Unmodified	_VYYSPETI_					0	0	0		nc|ENSG00000012124|P20273-5|CD22;nc|ENSG00000012124|P20273-4|CD22;nc|ENSG00000012124|P20273-3|CD22;ENSG00000012124|ENST00000085219|CD22;nc|ENSG00000012124|P20273-2|CD22	nc|ENSG00000012124|P20273-5|CD22	nc|ENSG00000012124|P20273-5|CD22	MULTI-MSMS	A375_MHC_IP_R1	1	486.63812255859375	2	486.239658	970.464763	-0.14956	-7.2723E-05	-1.5984	-0.00077718	-1.7479	-0.00084991	486.2387467429495	72.723	0.60851	72.723	72.423	73.031	0					17	11	2	0	0	0	0.77123	1	26486	26486		14.582	1.0738	1	1188900			61739	1007	45046	45401	60128	60128					-0.021650299506063675
VYYSPETI	8	Unmodified	_VYYSPETI_					0	0	0		nc|ENSG00000012124|P20273-5|CD22;nc|ENSG00000012124|P20273-4|CD22;nc|ENSG00000012124|P20273-3|CD22;ENSG00000012124|ENST00000085219|CD22;nc|ENSG00000012124|P20273-2|CD22	nc|ENSG00000012124|P20273-5|CD22	nc|ENSG00000012124|P20273-5|CD22	MULTI-MATCH	A375_MHC_IP_R2	2		2	486.239658	970.464763	-0.85965	-0.000418	-1.7539	-0.00085283	-2.6136	-0.0012708	486.23878814165556	72.01	0.60738	72.744	72.364	72.971	0.73421	0.010618	-6.4689E-05	NaN	14.582	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1160900			61740	1007	45046	45401							-0.021650299506063675
WADIFSKYNSG	11	Unmodified	_WADIFSKYNSG_					0	0	0		ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MULTI-SECPEP	A375_MHC_IP_R2	2	644.7041625976562	2	644.303852	1286.59315	-0.70368	-0.00045339	0.45701	0.00029445	-0.24668	-0.00015894	644.3039584790512	77.655	0.96986	78.398	78.01	78.98	0.74293					28	18	3	0	0	0	0.9889	1	29478	29478		12.241	2.8575	1	2250500			61741	3716	45047	45402	60129	60129					-0.03868094707513592
WAKKPLLTE	9	Unmodified	_WAKKPLLTE_					0	0	0		ENST00000505151.5_1_5:180674073-180684306:+|nuORF	ENST00000505151.5_1_5:180674073-180684306:+|nuORF	ENST00000505151.5_1_5:180674073-180684306:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1085.9091796875	1	1085.63536	1084.62808	-0.46806	-0.00050814	1.5327	0.001664	1.0647	0.0011558	1086.6384597059641	122.92	0.35191	122.92	122.83	123.18	0					8	6	2	0	0	0	0.7911	1	45864	45864		7.2892	2.96	1	107970000			61742	12838	45048	45403	60130	60130					0.08915192891095103
WALLNSEYVT	10	Unmodified	_WALLNSEYVT_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-SECPEP	A375_MHC_IP_R2	2	597.7254028320312	2	598.303321	1194.59209	-0.60218	-0.00036028	0.04773	2.8557E-05	-0.55445	-0.00033173	598.303107236164	106.54	0.4069	107.3	107.19	107.6	0.75977					11	7	2	0	0	0	0.92957	1	40282	40282		3.2813	0	1	1095500			61743	9935	45049	45404	60131	60131					0.0025769092355858447
WAPGTATA	8	Unmodified	_WAPGTATA_					0	0	0			REV__ENST00000564397.5_1_16:5075481-5078139:-|nuORF	REV__ENST00000564397.5_1_16:5075481-5078139:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	388.0931091308594	2	387.692678	773.370804	-0.06075	-2.3552E-05	1.1226	0.00043524	1.0619	0.00041169	387.6929922111617	87.761	0.40426	88.493	88.217	88.621	0.7318					11	7	2	0	0	0	0.972	1	33379	33379		2.5775	0	1	1490600	+		61744	26216	45050	45405	60132	60132					-0.024947042622329718
WAPGTATA	8	Unmodified	_WAPGTATA_					0	0	0			REV__ENST00000564397.5_1_16:5075481-5078139:-|nuORF	REV__ENST00000564397.5_1_16:5075481-5078139:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	387.692678	773.370804	0.29807	0.00011556	0.40915	0.00015863	0.70722	0.00027418	387.69279404173267	88.359	0.50929	88.359	88.103	88.612	0	-0.067044	-0.00026569	NaN	2.5775	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1443900	+		61745	26216	45050	45405							-0.024947042622329718
WAPKKEPYA	9	Unmodified	_WAPKKEPYA_					0	0	0		ENSG00000275832|ENST00000622683|ARHGAP23	ENSG00000275832|ENST00000622683|ARHGAP23	ENSG00000275832|ENST00000622683|ARHGAP23	MULTI-SECPEP	A375_MHC_IP_R1	1	363.9595947265625	3	363.862437	1088.56548	0.15418	5.61E-05	1.2128	0.00044131	1.367	0.00049741	363.8632342320309	61.201	0.51043	61.201	60.871	61.382	0					14	9	2	0	0	0	0.79429	1	22022	22022		7.1017	3.5147	1	1331400			61746	10013	45051	45406	60133	60133					0.024740468228856116
WAPRLCYCC	9	Unmodified	_WAPRLCYCC_					0	0	0		ENST00000529601.5_1_11:64879440-64881038:+|nuORF	ENST00000529601.5_1_11:64879440-64881038:+|nuORF	ENST00000529601.5_1_11:64879440-64881038:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	372.5591735839844	3	372.159214	1113.45581	0.51768	0.00019266	-0.4107	-0.00015285	0.10698	3.9813E-05	372.1590478700799	104.8	0.81352	105.56	105.26	106.07	0.76308					24	15	2	0	0	0	0.77154	1	39679	39679		0.26902	0.033176	1	3026400			61747	13131	45052	45407	60134	60134					-0.09637741383971843
WAPRLCYCC	9	Unmodified	_WAPRLCYCC_					0	0	0		ENST00000529601.5_1_11:64879440-64881038:+|nuORF	ENST00000529601.5_1_11:64879440-64881038:+|nuORF	ENST00000529601.5_1_11:64879440-64881038:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	372.159214	1113.45581	0.44968	0.00016735	-0.098814	-3.6774E-05	0.35087	0.00013058	372.1592168084704	105.56	0.91425	105.56	105.25	106.16	0	-0.0028672	0.00021887	NaN	0.26902	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1484000			61748	13131	45052	45407							-0.09637741383971843
WARKPLRF	8	Unmodified	_WARKPLRF_					0	0	0		nc|ENSG00000103152|P29372-5|MPG;nc|ENSG00000103152|P29372-2|MPG;ENSG00000103152|ENST00000356432|MPG;nc|ENSG00000103152|P29372|MPG	nc|ENSG00000103152|P29372-5|MPG	nc|ENSG00000103152|P29372-5|MPG	MULTI-MSMS	A375_MHC_IP_R1	1	358.9503479003906	3	358.550416	1072.62942	-0.16471	-5.9056E-05	-0.063154	-2.2644E-05	-0.22786	-8.17E-05	358.5503822945474	32.591	0.45328	32.591	32.383	32.836	0					19	8	3	0	0	0	0.75801	1	10548	10548		18.146	4.2403	1	6911100			61749	2425	45053	45408	60135	60135					0.09600871770498998
WARTEPIGSE	10	Unmodified	_WARTEPIGSE_					0	0	0			REV__ENST00000587257.1_1_19:36426667-36427862:+|nuORF	REV__ENST00000587257.1_1_19:36426667-36427862:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	383.2587585449219	3	382.524372	1144.55129	-0.39645	-0.00015165	0.41989	0.00016062	0.023441	8.9667E-06	382.5243678722214	23.424	0.30341	24.054	23.928	24.232	0.63014					6	5	2	0	0	0	0.92514	1	7586	7586		7.4771	3.6312	1	3777200	+		61750	26398	45054	45409	60136	60136					-0.015206503960371265
WARTEPIGSE	10	Unmodified	_WARTEPIGSE_					0	0	0			REV__ENST00000587257.1_1_19:36426667-36427862:+|nuORF	REV__ENST00000587257.1_1_19:36426667-36427862:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	382.524372	1144.55129	0.097137	3.7157E-05	-0.11688	-4.4709E-05	-0.01974	-7.5512E-06	382.52422692095297	24.109	0.30487	24.109	23.94	24.245	0	0.027513	-0.00041592	NaN	4.7159	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2199000	+		61751	26398	45054	45409							-0.015206503960371265
WASIAFGESY	10	Unmodified	_WASIAFGESY_					0	0	0			REV__nc|ENSG00000182329|Q0VF49|KIAA2012	REV__nc|ENSG00000182329|Q0VF49|KIAA2012	MULTI-SECPEP	A375_MHC_IP_R1	1	566.1609497070312	2	565.761289	1129.50803	-0.2928	-0.00016566	0.24794	0.00014027	-0.044865	-2.5383E-05	565.761313721946	62.888	0.56416	62.888	62.557	63.121	0					15	10	2	0	0	0	0.56504	1	22738	22738		27.629	5.8822	1	2136900	+		61752	21684	45055	45410	60137	60137					-0.05154840173327102
WAVCTGLHPS	10	Unmodified	_WAVCTGLHPS_					0	0	0		ENST00000409509.5_3_16:67243955-67260901:-|nuORF;ENST00000393992.5_2_16:67243955-67260646:-|nuORF	ENST00000409509.5_3_16:67243955-67260901:-|nuORF	ENST00000409509.5_3_16:67243955-67260901:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	357.90740966796875	3	357.507777	1069.5015	-0.22367	-7.9965E-05	-0.65885	-0.00023554	-0.88252	-0.00031551	357.5075188137195	130.34	0.20261	130.56	130.45	130.65	0.2142					5	3	2	0	0	0	0.72378	1	51284	51284		0.69767	0.07084	1	9495400			61753	11446	45056	45411	60138	60138					-0.030470566057147153
WAVEKSKRHI	10	Unmodified	_WAVEKSKRHI_					0	0	0			REV__nc|ENSG00000161533|Q15067-3|ACOX1	REV__nc|ENSG00000161533|Q15067-3|ACOX1	MSMS	A375_MHC_IP_R1	1	627.4282836914062	2	627.359296	1252.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.19	1	137.19	136.69	137.69	0								0	0	0	0.15541	1	52818	52818		3.2813	0.28607	1		+		61754	20211	45057	45412	60139	60139					0.08779589791220133
WAVLLSHA	8	Unmodified	_WAVLLSHA_					0	0	0			REV__nc|ENSG00000114270|Q02388-2|COL7A1	REV__nc|ENSG00000114270|Q02388-2|COL7A1	MULTI-SECPEP	A375_MHC_IP_R1	1	448.173828125	2	448.75307	895.491587	-0.1133	-5.0842E-05	-0.17402	-7.8094E-05	-0.28732	-0.00012894	448.7527603943249	75.181	0.45406	75.181	74.908	75.362	0					14	8	2	0	0	0	0.90224	1	27365	27365		19.439	0	1	1237000	+		61755	17818	45058	45413	60140	60140					0.039661234512209376
WCDTCFIY	8	Unmodified	_WCDTCFIY_					0	0	0			REV__nc|ENSG00000062282|Q96PD7-2|DGAT2	REV__nc|ENSG00000062282|Q96PD7-2|DGAT2	MULTI-MSMS	A375_MHC_IP_R1	1	525.6846313476562	2	525.706614	1049.39867	-0.42777	-0.00022488	-0.86757	-0.00045609	-1.2953	-0.00068097	525.706373396174	54.593	0.81218	54.593	54.263	55.075	0					21	15	2	0	0	0	0.7479	1	19611	19611		20.871	6.2895	1	2110500	+		61756	16457	45059	45414	60141	60141					-0.12404885388650655
WCDTCFIY	8	Unmodified	_WCDTCFIY_					0	0	0			REV__nc|ENSG00000062282|Q96PD7-2|DGAT2	REV__nc|ENSG00000062282|Q96PD7-2|DGAT2	MULTI-MSMS	A375_MHC_IP_R2	2	526.1060180664062	2	525.706614	1049.39867	-0.81804	-0.00043005	-0.65362	-0.00034361	-1.4717	-0.00077366	525.7065910818002	54.06	0.91814	54.811	54.301	55.22	0.75105					25	17	2	0	0	0	0.77123	1	20426	20426		14.582	5.2343	1	1874500	+		61757	16457	45059	45414	60142	60142					-0.12404885388650655
WCDTCFIY	8	Unmodified	_WCDTCFIY_					0	0	0			REV__nc|ENSG00000062282|Q96PD7-2|DGAT2	REV__nc|ENSG00000062282|Q96PD7-2|DGAT2	MSMS	A375_MHC_IP_R2	2	525.688232421875	2	525.706614	1049.39867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.192	1	76.932	76.432	77.432	0.74052								0	0	0	0.16876	1	28925	28925		5.7604	1.0044	1		+		61758	16457	45059	45414	60143	60143					-0.12404885388650655
WCDTCFIY	8	Unmodified	_WCDTCFIY_					0	0	0			REV__nc|ENSG00000062282|Q96PD7-2|DGAT2	REV__nc|ENSG00000062282|Q96PD7-2|DGAT2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	525.706614	1049.39867	-0.42777	-0.00022488	-0.86757	-0.00045609	-1.2953	-0.00068097	525.706373396174	54.593	0.81218	54.593	54.263	55.075	0	-0.109	-8.924E-05	NaN	20.871	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2110500	+		61759	16457	45059	45414							-0.12404885388650655
WCDTCFIY	8	Unmodified	_WCDTCFIY_					0	0	0			REV__nc|ENSG00000062282|Q96PD7-2|DGAT2	REV__nc|ENSG00000062282|Q96PD7-2|DGAT2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	525.706614	1049.39867	-0.81804	-0.00043005	-0.65362	-0.00034361	-1.4717	-0.00077366	525.7065910818002	54.06	0.91814	54.811	54.301	55.22	0.75105	0.109	0.00013572	NaN	20.871	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1874500	+		61760	16457	45059	45414							-0.12404885388650655
WCECCCSG	8	Unmodified	_WCECCCSG_					0	0	0		ENST00000262520.10_1_16:30996539-30997136:+|nuORF	ENST00000262520.10_1_16:30996539-30997136:+|nuORF	ENST00000262520.10_1_16:30996539-30997136:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	889.9102172851562	1	890.229977	889.222701	-0.30354	-0.00027022	0.91893	0.00081805	0.61539	0.00054784	890.2332745563688	46.806	1.4752	46.806	45.992	47.467	0					56	28	3	0	0	0	0.77861	1	16161	16161		0	0	1	2549500			61761	10308	45060	45415	60144	60144					-0.2263416616590348
WCECCCSG	8	Unmodified	_WCECCCSG_					0	0	0		ENST00000262520.10_1_16:30996539-30997136:+|nuORF	ENST00000262520.10_1_16:30996539-30997136:+|nuORF	ENST00000262520.10_1_16:30996539-30997136:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	891.697509765625	1	890.229977	889.222701	0.0067356	5.9963E-06	1.1033	0.00098219	1.11	0.00098818	890.2332043076465	70.627	3.153	70.627	68.412	71.565	0					101	61	2	0	0	0	0.77861	1	25564	25564		0	0	1	1612000			61762	10308	45060	45415	60145	60145					-0.2263416616590348
WCECCCSG	8	Unmodified	_WCECCCSG_					0	0	0		ENST00000262520.10_1_16:30996539-30997136:+|nuORF	ENST00000262520.10_1_16:30996539-30997136:+|nuORF	ENST00000262520.10_1_16:30996539-30997136:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	889.9658813476562	1	890.229977	889.222701	-0.57074	-0.00050809	0.9607	0.00085524	0.38995	0.00034715	890.233343035373	147.99	0.21875	147.99	147.78	148	0					11	8	2	0	0	0	0.77861	1	56522	56522		0	0	1	29185			61763	10308	45060	45415	60146	60146					-0.2263416616590348
WCECCCSG	8	Unmodified	_WCECCCSG_					0	0	0		ENST00000262520.10_1_16:30996539-30997136:+|nuORF	ENST00000262520.10_1_16:30996539-30997136:+|nuORF	ENST00000262520.10_1_16:30996539-30997136:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	890.7079467773438	1	890.229977	889.222701	-0.46034	-0.00040981	1.2801	0.0011396	0.81979	0.0007298	890.2331595219032	102.27	1.4751	103.03	102.36	103.84	0.76428					43	28	2	0	0	0	0.972	1	38749	38749		0	0	1	1412200			61764	10308	45060	45415	60147	60147					-0.2263416616590348
WCFIQISV	8	Unmodified	_WCFIQISV_					0	0	0		ENST00000480957.6_2_3:49456386-49456881:-|nuORF;ENST00000465925.6_2_3:49454975-49456881:-|nuORF	ENST00000480957.6_2_3:49456386-49456881:-|nuORF	ENST00000480957.6_2_3:49456386-49456881:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	498.6541748046875	2	498.254588	994.494624	-0.37516	-0.00018692	-0.10251	-5.1075E-05	-0.47766	-0.000238	498.2544861145855	87.87	0.71356	87.87	87.542	88.256	0					38	13	4	0	0	0	0.61116	1	32233	32233		44.407	0	1	9470300			61765	12252	45061	45416	60148	60148					-0.002843694862690427
WCFQVATEY	9	Unmodified	_WCFQVATEY_					0	0	0			REV__ENSG00000131477|ENST00000253796|RAMP2	REV__ENSG00000131477|ENST00000253796|RAMP2	MULTI-MSMS	A375_MHC_IP_R2	2	574.6668701171875	2	573.749867	1145.48518	-0.38967	-0.00022357	-3.0787	-0.0017664	-3.4684	-0.00199	574.2480019119554	35.853	0.35643	36.616	36.435	36.792	0.76338					16	6	3	0	0	0	0.63811	1	13051	13051		12.532	0.89125	1	1639200	+		61766	18608	45062	45417	60149	60149					-0.0817418256244764
WCLLHLRW	8	Unmodified	_WCLLHLRW_					0	0	0		ENST00000334350.6_1_16:56691630-56693012:+|nuORF	ENST00000334350.6_1_16:56691630-56693012:+|nuORF	ENST00000334350.6_1_16:56691630-56693012:+|nuORF	MSMS	A375_MHC_IP_R1	1	376.264892578125	3	376.20414	1125.59059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.345	1	46.345	45.845	46.845	0								0	0	0	0.16876	1	16255	16255		7.2892	3.9696	1				61767	10793	45063	45418	60150	60150					0.03281823144493501
WCMRMLEF	8	Unmodified	_WCMRMLEF_					0	0	0			REV__ENSG00000140443|ENST00000650285|IGF1R	REV__ENSG00000140443|ENST00000650285|IGF1R	MULTI-MSMS	A375_MHC_IP_R2	2	558.6769409179688	2	558.245383	1114.47621	-0.6305	-0.00035197	-1.9668	-0.001098	-2.5973	-0.0014499	558.7466178028817	89.888	0.2568	90.62	90.442	90.699	0.7318					6	4	2	0	0	0	0.77123	1	34177	34177		14.582	2.0501	1	351820	+		61768	19212	45064	45419	60151	60151					-0.07644570724141886
WCWRWWRRPNW	11	Unmodified	_WCWRWWRRPNW_					0	0	0			REV__ENST00000564348.5_1_19:7982609-7983760:+|nuORF	REV__ENST00000564348.5_1_19:7982609-7983760:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	866.8160400390625	2	866.414946	1730.81534	-0.67808	-0.0005875	0.41163	0.00035664	-0.26645	-0.00023086	866.4154185469029	67.879	0.65863	67.879	67.5	68.159	0					43	12	4	0	0	0	0.73809	1	24533	24533		1.1933	1.1933	1	20668000	+		61769	26215	45065	45420	60152	60152					-0.0208367405248282
WCWRWWRRPNW	11	Unmodified	_WCWRWWRRPNW_					0	0	0			REV__ENST00000564348.5_1_19:7982609-7983760:+|nuORF	REV__ENST00000564348.5_1_19:7982609-7983760:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	866.81494140625	2	866.414946	1730.81534	-0.61051	-0.00052895	-0.0049098	-4.2539E-06	-0.61542	-0.00053321	866.4150893862446	67.264	0.60947	68.001	67.698	68.308	0.73631					43	11	5	0	0	0	0.73902	1	25430	25430		0.30703	0.30703	1	20435000	+		61770	26215	45065	45420	60153	60153					-0.0208367405248282
WCWRWWRRPNW	11	Unmodified	_WCWRWWRRPNW_					0	0	0			REV__ENST00000564348.5_1_19:7982609-7983760:+|nuORF	REV__ENST00000564348.5_1_19:7982609-7983760:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	866.414946	1730.81534	-0.67808	-0.0005875	0.41163	0.00035664	-0.26645	-0.00023086	866.4154185469029	67.879	0.65863	67.879	67.5	68.159	0	-0.060625	0.00040013	NaN	1.1933	43	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20668000	+		61771	26215	45065	45420							-0.0208367405248282
WCWYVVGEV	9	Unmodified	_WCWYVVGEV_					0	0	0		ENST00000405006.8_3_2:43768389-43768428:-|nuORF	ENST00000405006.8_3_2:43768389-43768428:-|nuORF	ENST00000405006.8_3_2:43768389-43768428:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	571.163818359375	2	570.762778	1139.511	-0.19701	-0.00011244	0.92744	0.00052935	0.73043	0.0004169	570.7641131268877	56.02	1.9327	56.02	55.381	57.313	0					94	37	4	0	0	0	0.43185	1	19966	19966		23.148	23.148	1	5842800			61772	11586	45066	45421	60154	60154					-0.05317288320179614
WDAFSNEE	8	Unmodified	_WDAFSNEE_					0	0	0		nc|ENSG00000163590|Q5SGD2-2|PPM1L;nc|ENSG00000163590|Q5SGD2-3|PPM1L;ENSG00000163590|ENST00000498165|PPM1L	nc|ENSG00000163590|Q5SGD2-2|PPM1L	nc|ENSG00000163590|Q5SGD2-2|PPM1L	MSMS	A375_MHC_IP_R2	2	499.1479187011719	2	499.198522	996.38249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.153	1	60.9	60.4	61.4	0.74714								0	0	0	0.16876	1	22769	22769		12.532	2.3482	1				61773	6689	45067	45422	60155	60155					-0.11584552029557926
WDDDEMEWE	9	Unmodified	_WDDDEMEWE_					0	0	0		ANKS4B|p.V336M|1|0.12|ENSG00000175311|chr16:21250572-21250572|G/A|missense_variant	ANKS4B|p.V336M|1|0.12|ENSG00000175311|chr16:21250572-21250572|G/A|missense_variant	ANKS4B|p.V336M|1|0.12|ENSG00000175311|chr16:21250572-21250572|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	627.6458129882812	2	627.716418	1253.41828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.245	1	94.245	93.745	94.745	0								0	0	0	0.15486	1	34641	34641		7.2892	3.3448	1				61774	148	45068	45423	60156	60156					-0.19828882634851652
WDEEMDGEW	9	Unmodified	_WDEEMDGEW_					0	0	0		ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	MULTI-SECPEP	A375_MHC_IP_R2	2	599.1129760742188	2	598.713679	1195.4128	-0.52901	-0.00031673	-1.889	-0.0011309	-2.418	-0.0014477	598.7131095825933	76.5	0.75968	77.241	76.742	77.501	0.74052					33	14	3	0	0	0	0.76187	1	29129	29129		7.2892	0	1	5486800			61775	8214	45069	45424	60157	60157					-0.17708561426661618
WDERPKIPDP	10	Unmodified	_WDERPKIPDP_					0	0	0		ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX	ENSG00000127022|ENST00000247461|CANX	ENSG00000127022|ENST00000247461|CANX	MULTI-SECPEP	A375_MHC_IP_R1	1	418.9676208496094	3	418.215539	1251.62479	0.36047	0.00015075	-3.3543	-0.0014028	-2.9938	-0.0012521	418.21401469969527	37.405	0.46083	37.405	37.249	37.71	0					9	8	2	0	0	0	0.93407	1	12590	12590		7.0371	1.2537	1	720980			61776	4073	45070	45425	60158	60158					0.009038980464310953
WDFFDGNY	8	Unmodified	_WDFFDGNY_					0	0	0			REV__ENSG00000177084|ENST00000320574|POLE	REV__ENSG00000177084|ENST00000320574|POLE	MULTI-MSMS	A375_MHC_IP_R1	1	532.6469116210938	2	532.211432	1062.40831	-0.76553	-0.00040743	0.8159	0.00043423	0.05037	2.6807E-05	532.2118272843437	39.99	0.5099	39.99	39.744	40.254	0					20	9	3	0	0	0	0.77675	1	13703	13703		6.7232	6.7232	1	4473900	+		61777	21436	45071	45426	60159	60159					-0.12039657787295255
WDFFDGNY	8	Unmodified	_WDFFDGNY_					0	0	0			REV__ENSG00000177084|ENST00000320574|POLE	REV__ENSG00000177084|ENST00000320574|POLE	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	532.211432	1062.40831	-0.76553	-0.00040743	0.8159	0.00043423	0.05037	2.6807E-05	532.2118272843437	39.99	0.5099	39.99	39.744	40.254	0	-0.096451	9.189E-05	NaN	6.7232	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4473900	+		61778	21436	45071	45426							-0.12039657787295255
WDFFDGNY	8	Unmodified	_WDFFDGNY_					0	0	0			REV__ENSG00000177084|ENST00000320574|POLE	REV__ENSG00000177084|ENST00000320574|POLE	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	532.211432	1062.40831	-0.75948	-0.0004042	0.59725	0.00031786	-0.16223	-8.6339E-05	532.2117971362283	39.408	0.66156	40.183	39.914	40.575	0.77451	0.096451	-0.00014085	NaN	6.7232	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3051100	+		61779	21436	45071	45426							-0.12039657787295255
WDFTLKRKRRE	11	Unmodified	_WDFTLKRKRRE_					0	0	0		ENSG00000173848|ENST00000355029|NET1	ENSG00000173848|ENST00000355029|NET1	ENSG00000173848|ENST00000355029|NET1	MULTI-SECPEP	A375_MHC_IP_R2	2	513.0250244140625	3	512.291553	1533.85283	-0.954	-0.00048872	-0.8836	-0.00045266	-1.8376	-0.00094139	512.625420265196	54.594	0.45539	55.345	55.068	55.523	0.75075					18	8	3	0	0	0	1.0005	1	20633	20633		2.4348	0	1	3723300			61780	7834	45072	45427	60160	60160					0.10725695694077331
WDLEDMEKY	9	Unmodified	_WDLEDMEKY_					0	0	0		nc|ENSG00000134909|A7KAX9-2|ARHGAP32;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-MSMS	A375_MHC_IP_R1	1	615.1633911132812	2	614.763171	1227.51179	-0.24686	-0.00015176	-0.21579	-0.00013266	-0.46265	-0.00028442	614.7631890363635	43.55	0.71357	43.55	43.043	43.757	0					28	13	3	0	0	0	0.38603	1	15172	15172		25.399	0	1	2807600			61781	4625	45073	45428	60161	60161					-0.09286538461788041
WDLEDMEKY	9	Unmodified	_WDLEDMEKY_					0	0	0		nc|ENSG00000134909|A7KAX9-2|ARHGAP32;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-SECPEP	A375_MHC_IP_R2	2	615.1622924804688	2	614.763171	1227.51179	-0.5165	-0.00031753	-0.35237	-0.00021662	-0.86887	-0.00053415	614.7630258621164	42.826	0.60731	43.598	43.369	43.977	0.7724					24	11	3	0	0	0	0.65246	1	15977	15977		15.847	0	1	2685800			61782	4625	45073	45428	60162	60162					-0.09286538461788041
WDLERESV	8	Unmodified	_WDLERESV_					0	0	0			REV__ENST00000602287.5_1_10:104486384-104488287:+|nuORF	REV__ENST00000602287.5_1_10:104486384-104488287:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	517.665283203125	2	517.251089	1032.48762	-0.56112	-0.00029024	-0.16947	-8.7659E-05	-0.73059	-0.0003779	517.2509733871096	43.682	1.9255	44.451	44.076	46.001	0.7691					102	37	5	0	0	0	0.77488	1	16714	16714		13.508	0.97634	1	174870000	+		61783	19979	45074	45429	60163	60163					-0.0273201083314234
WDNIKQLT	8	Unmodified	_WDNIKQLT_					0	0	0			REV__nc|ENSG00000135241|Q9NP80-3|PNPLA8	REV__nc|ENSG00000135241|Q9NP80-3|PNPLA8	MULTI-MSMS	A375_MHC_IP_R1	1	509.2024230957031	2	509.271824	1016.5291	-0.21903	-0.00011155	-0.15914	-8.1047E-05	-0.37817	-0.00019259	509.2716543348803	54.11	0.55464	54.11	53.809	54.364	0					25	10	3	0	0	0	0.74945	1	19397	19397		20.454	1.1966	1	5876700	+		61784	18833	45075	45430	60164	60164					0.02149169926178729
WDPIQRLLF	9	Unmodified	_WDPIQRLLF_					0	0	0		ENSG00000085449|ENST00000233055|WDFY1	ENSG00000085449|ENST00000233055|WDFY1	ENSG00000085449|ENST00000233055|WDFY1	MULTI-SECPEP	A375_MHC_IP_R2	2	396.27655029296875	3	396.557236	1186.64988	-0.18112	-7.1824E-05	0.024324	9.6459E-06	-0.1568	-6.2178E-05	396.55725618901977	65.036	0.50769	65.774	65.613	66.121	0.73811					17	9	2	0	0	0	0.78348	1	24750	24750		4.897	3.8255	1	1403000			61785	1813	45076	45431	60165	60165					0.06401997639659385
WDPIQRLLF	9	Unmodified	_WDPIQRLLF_					0	0	0		ENSG00000085449|ENST00000233055|WDFY1	ENSG00000085449|ENST00000233055|WDFY1	ENSG00000085449|ENST00000233055|WDFY1	MULTI-MATCH	A375_MHC_IP_R1	1		3	396.557236	1186.64988	-0.25888	-0.00010266	-1.1299	-0.00044808	-1.3888	-0.00055074	396.5573816983638	66.147	0.55804	66.147	65.819	66.377	0	0.1868	-0.0013195	NaN	2.4985	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	900320			61786	1813	45076	45431							0.06401997639659385
WDRHSRVYWWQ	11	Unmodified	_WDRHSRVYWWQ_					0	0	0			REV__nc|ENSG00000132821|Q96N03-2|VSTM2L	REV__nc|ENSG00000132821|Q96N03-2|VSTM2L	MULTI-MSMS	A375_MHC_IP_R1	1	810.2853393554688	2	809.886741	1617.75893	-0.33092	-0.00026801	-0.93041	-0.00075353	-1.2613	-0.0010215	810.3877013201864	70.793	0.82024	70.793	70.237	71.057	0					31	15	4	0	0	0	0.73135	1	25711	25711		7.609	7.2583	1	6215400	+		61787	18684	45077	45432	60166	60166					-0.02524023408159337
WDRHSRVYWWQ	11	Unmodified	_WDRHSRVYWWQ_					0	0	0			REV__nc|ENSG00000132821|Q96N03-2|VSTM2L	REV__nc|ENSG00000132821|Q96N03-2|VSTM2L	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	809.886741	1617.75893	-0.33092	-0.00026801	-0.93041	-0.00075353	-1.2613	-0.0010215	810.3877013201864	70.793	0.82024	70.793	70.237	71.057	0	-0.073323	0.00050018	NaN	7.609	31	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6215400	+		61788	18684	45077	45432							-0.02524023408159337
WDRHSRVYWWQ	11	Unmodified	_WDRHSRVYWWQ_					0	0	0			REV__nc|ENSG00000132821|Q96N03-2|VSTM2L	REV__nc|ENSG00000132821|Q96N03-2|VSTM2L	MULTI-MATCH	A375_MHC_IP_R2	2		2	809.886741	1617.75893	-0.81254	-0.00065806	-1.5421	-0.0012489	-2.3546	-0.001907	810.3869610224731	70.205	0.81357	70.939	70.386	71.2	0.73421	0.073323	-0.00049063	NaN	7.609	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6079900	+		61789	18684	45077	45432							-0.02524023408159337
WDRLMWHCRWI	11	Unmodified	_WDRLMWHCRWI_					0	0	0			REV__chr14:102233789-102234530|145|11.86|0.07|7.42|-|1|TE_info:HERVFH21-int,HERVFH21-int_dup103,ERV1,LTR,donor,+,102234530,102239533|MOK,None|4	REV__chr14:102233789-102234530|145|11.86|0.07|7.42|-|1|TE_info:HERVFH21-int,HERVFH21-int_dup103,ERV1,LTR,donor,+,102234530,102239533|MOK,None|4	MULTI-SECPEP	A375_MHC_IP_R1	1	534.4555053710938	3	534.592069	1600.75438	-0.52953	-0.00028308	0.63252	0.00033814	0.10299	5.5056E-05	534.5921736701024	82.088	0.40556	82.088	81.911	82.316	0					10	7	2	0	0	0	1.0014	1	29956	29956		0.50596	0.4226	1	889030	+		61790	15702	45078	45433	60167	60167					-0.021969471469446944
WDSDEHGV	8	Unmodified	_WDSDEHGV_					0	0	0			REV__ENST00000415128.6_1_6:142623466-142692070:+|nuORF	REV__ENST00000415128.6_1_6:142623466-142692070:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	473.0903015136719	2	472.690864	943.367175	-0.61764	-0.00029195	0.016228	7.6709E-06	-0.60141	-0.00028428	472.69081022093064	68.54	0.5586	68.54	68.159	68.717	0					15	10	2	0	0	0	0.77702	1	24848	24848		5.7604	5.7604	1	1727600	+		61791	17732	45079	45434	60168	60168					-0.10677418826753637
WDSPLRNTPR	10	Unmodified	_WDSPLRNTPR_					0	0	0			REV__ENSG00000198853|ENST00000361226|RUSC2	REV__ENSG00000198853|ENST00000361226|RUSC2	MSMS	A375_MHC_IP_R2	2	414.6402282714844	3	414.551033	1240.63127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.531	1	27.191	26.691	27.691	0.65992								0	0	0	0.15306	1	8973	8973		10.899	2.1472	1		+		61792	22432	45080	45435	60169	60169					0.02057835997766233
WDSQKIRSGW	10	Unmodified	_WDSQKIRSGW_					0	0	0			REV__ENST00000378300.9_1_9:35682437-35682695:-|nuORF	REV__ENST00000378300.9_1_9:35682437-35682695:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	632.3062133789062	2	631.817461	1261.62037	-0.52522	-0.00033184	0.036744	2.3216E-05	-0.48847	-0.00030862	631.8174561883048	105.58	0.55751	105.58	105.2	105.76	0					17	10	2	0	0	0	0.69833	1	38769	38769		13.042	0.80181	1	3073700	+		61793	24178	45081	45436	60170	60170					2.4336235355804092E-05
WDSWTSSQRTD	11	Unmodified	_WDSWTSSQRTD_					0	0	0		CRYBB2|p.R89Q|1|0.44|ENSG00000244752|chr22:25227945-25227945|G/A|missense_variant	CRYBB2|p.R89Q|1|0.44|ENSG00000244752|chr22:25227945-25227945|G/A|missense_variant	CRYBB2|p.R89Q|1|0.44|ENSG00000244752|chr22:25227945-25227945|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	685.1941528320312	2	684.79438	1367.57421	-0.59315	-0.00040619	-0.047003	-3.2187E-05	-0.64016	-0.00043838	684.7941678245944	33.948	0.35344	33.948	33.698	34.052	0					11	6	2	0	0	0	0.97182	1	11143	11143		13.615	2.8154	1	2496700			61794	666	45082	45437	60171	60171					-0.0948767606923866
WDSWTSSQRTD	11	Unmodified	_WDSWTSSQRTD_					0	0	0		CRYBB2|p.R89Q|1|0.44|ENSG00000244752|chr22:25227945-25227945|G/A|missense_variant	CRYBB2|p.R89Q|1|0.44|ENSG00000244752|chr22:25227945-25227945|G/A|missense_variant	CRYBB2|p.R89Q|1|0.44|ENSG00000244752|chr22:25227945-25227945|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	684.79438	1367.57421	-0.91972	-0.00062982	0.60729	0.00041587	-0.31243	-0.00021395	684.7941404939191	33.301	0.40756	34.053	33.789	34.196	0.75225	0.05281	0.0006722	NaN	13.615	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2801100			61795	666	45082	45437							-0.0948767606923866
WDTCGDASGRK	11	Unmodified	_WDTCGDASGRK_					0	0	0			REV__ENSG00000169306|ENST00000378993|IL1RAPL1	REV__ENSG00000169306|ENST00000378993|IL1RAPL1	MSMS	A375_MHC_IP_R1	1	598.2109375	2	598.261662	1194.50877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.738	1	94.738	94.238	95.238	0								0	0	0	0.16124	1	34821	34821		12.241	0.60036	1		+		61796	20923	45083	45438	60172	60172					-0.0807036879593852
WDVYSGYLLW	10	Unmodified	_WDVYSGYLLW_					0	0	0		ENSG00000175514|ENST00000312457|GPR152	ENSG00000175514|ENST00000312457|GPR152	ENSG00000175514|ENST00000312457|GPR152	MSMS	A375_MHC_IP_R2	2	651.3180541992188	2	651.313689	1300.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.87	1	143.89	143.39	144.39	0.024414								0	0	0	0.15591	1	56213	56213		1.6526	0.17072	1				61797	7967	45084	45439	60173	60173					-0.025457186967742018
WDWDHDFL	8	Unmodified	_WDWDHDFL_					0	0	0		ENST00000231368.9_1_5:96271240-96271516:+|nuORF	ENST00000231368.9_1_5:96271240-96271516:+|nuORF	ENST00000231368.9_1_5:96271240-96271516:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	567.7001953125	2	567.237981	1132.46141	-0.19387	-0.00010997	-1.0518	-0.00059663	-1.2457	-0.0007066	567.7391835661807	111.32	0.51591	112.05	111.9	112.42	0.73692					14	9	3	0	0	0	0.77123	1	41960	41960		14.582	4.3983	1	1596600			61798	10144	45085	45440	60174	60174					-0.09952280004631575
WEAAVGRPW	9	Unmodified	_WEAAVGRPW_					0	0	0		ENST00000462859.5_1_10:124615225-124639145:-|nuORF	ENST00000462859.5_1_10:124615225-124639145:-|nuORF	ENST00000462859.5_1_10:124615225-124639145:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	536.6720581054688	2	536.272158	1070.52976	-0.58349	-0.00031291	-0.52153	-0.00027968	-1.105	-0.00059259	536.7734899468044	71.133	0.66386	71.133	70.902	71.565	0					15	12	2	0	0	0	0.73008	1	25876	25876		12.241	10.911	1	1679000			61799	12207	45086	45441	60175	60175					-0.002679906341199967
WECPVGDIL	9	Unmodified	_WECPVGDIL_					0	0	0		ENSG00000115827|ENST00000375255|DCAF17;ENST00000468592.5_1_2:172300063-172325523:+|nuORF;ENST00000480855.1_1_2:172299988-172306494:+|nuORF	ENSG00000115827|ENST00000375255|DCAF17	ENSG00000115827|ENST00000375255|DCAF17	MSMS	A375_MHC_IP_R1	1	516.1551513671875	2	516.24696	1030.47937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.67	1	102.67	102.17	103.17	0								0	0	0	0.1499	1	37731	37731		21.747	4.8044	1				61800	3343	45087	45442	60176	60176					-0.03465281074136328
WEDDVNHSF	9	Unmodified	_WEDDVNHSF_					0	0	0		ENSG00000011426|ENST00000265748|ANLN;nc|ENSG00000011426|Q9NQW6-2|ANLN	ENSG00000011426|ENST00000265748|ANLN	ENSG00000011426|ENST00000265748|ANLN	MULTI-MSMS	A375_MHC_IP_R1	1	575.1358032226562	2	574.735803	1147.45705	-0.16764	-9.6348E-05	-0.064559	-3.7104E-05	-0.2322	-0.00013345	574.7357025181309	52.177	0.60935	52.177	51.982	52.592	0					25	11	3	0	0	0	0.050868	3	18524	18524;18536;18631		63.961	43.507	1	5949700			61801	1001	45088	45443	60177;60178;60179	60177					-0.11077789218211365
WEDDVNHSF	9	Unmodified	_WEDDVNHSF_					0	0	0		ENSG00000011426|ENST00000265748|ANLN;nc|ENSG00000011426|Q9NQW6-2|ANLN	ENSG00000011426|ENST00000265748|ANLN	ENSG00000011426|ENST00000265748|ANLN	MULTI-MSMS	A375_MHC_IP_R2	2	575.1351928710938	2	574.735803	1147.45705	-0.44474	-0.00025561	-0.66876	-0.00038436	-1.1135	-0.00063997	574.7352895294291	51.55	0.81324	52.303	51.864	52.677	0.75225					28	15	3	0	0	0	0.02114	1	19401	19401		82.529	58.509	1	8443900			61802	1001	45088	45443	60180	60180					-0.11077789218211365
WEDEALIGKKF	11	Unmodified	_WEDEALIGKKF_					0	0	0		ENSG00000173575|ENST00000394196|CHD2;nc|ENSG00000173575|O14647-2|CHD2;nc|ENSG00000173575|O14647-3|CHD2	ENSG00000173575|ENST00000394196|CHD2	ENSG00000173575|ENST00000394196|CHD2	MULTI-SECPEP	A375_MHC_IP_R1	1	446.3029479980469	3	445.902961	1334.68705	-0.059979	-2.6745E-05	0.65197	0.00029072	0.59199	0.00026397	445.90290209116785	64.044	0.60937	64.044	63.632	64.242	0					16	11	2	0	0	0	0.99955	1	23207	23207		0.40827	0.40827	1	1793900			61803	7811	45089	45444	60181	60181					0.03309624394751154
WEDEALIGKKF	11	Unmodified	_WEDEALIGKKF_					0	0	0		ENSG00000173575|ENST00000394196|CHD2;nc|ENSG00000173575|O14647-2|CHD2;nc|ENSG00000173575|O14647-3|CHD2	ENSG00000173575|ENST00000394196|CHD2	ENSG00000173575|ENST00000394196|CHD2	MULTI-MATCH	A375_MHC_IP_R2	2		3	445.902961	1334.68705	-0.32448	-0.00014469	0.6094	0.00027174	0.28492	0.00012705	445.902996080386	63.224	0.50729	63.966	63.634	64.141	0.74252	-0.038982	-2.3204E-05	NaN	0.40827	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1361400			61804	7811	45089	45444							0.03309624394751154
WEEKSHSL	8	Unmodified	_WEEKSHSL_					0	0	0			REV__ENSG00000155275|ENST00000389737|TRMT44	REV__ENSG00000155275|ENST00000389737|TRMT44	MULTI-SECPEP	A375_MHC_IP_R1	1	508.2313537597656	2	508.245806	1014.47706	-0.41445	-0.00021064	0.39574	0.00020113	-0.018709	-9.509E-06	508.24597802795563	73.913	0.50596	73.913	73.589	74.095	0					18	9	3	0	0	0	0.94479	1	26925	26925		8.5933	0	1	1027000	+		61805	19919	45090	45445	60182	60182					-0.029599934875591316
WEFLKQENMLW	11	Unmodified	_WEFLKQENMLW_					0	0	0			REV__ENSG00000188649|ENST00000646931|CC2D2B	REV__ENSG00000188649|ENST00000646931|CC2D2B	MSMS	A375_MHC_IP_R2	2	508.47222900390625	3	508.583234	1522.72787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.108	1	39.882	39.382	40.382	0.77451								0	0	0	0.16334	1	14425	14425		1.3296	0.11481	1		+		61806	22105	45091	45446	60183	60183					-0.012583575572762129
WEGDMEEDW	9	Unmodified	_WEGDMEEDW_					0	0	0			REV__ENSG00000179218|ENST00000316448|CALR	REV__ENSG00000179218|ENST00000316448|CALR	MULTI-MSMS	A375_MHC_IP_R2	2	598.1981811523438	2	598.713679	1195.4128	-0.52901	-0.00031673	-1.889	-0.0011309	-2.418	-0.0014477	598.7131095825933	76.5	0.75968	77.241	76.742	77.501	0.74052					33	14	3	0	0	0	0.69674	1	28950	28950		7.2892	0.56607	1	5486800	+		61807	21547	45092	45447	60184	60184					-0.17708561426684355
WEGGENDEEEE	11	Unmodified	_WEGGENDEEEE_					0	0	0			REV__nc|ENSG00000184110|Q99613-2|EIF3C	REV__nc|ENSG00000184110|Q99613-2|EIF3C	MSMS	A375_MHC_IP_R2	2	661.801025390625	2	661.736394	1321.45823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.843	1	11.341	10.841	11.841	0.49811								0	0	0	0.1636	1	3362	3362		0	0	1		+		61808	21796	45093	45448	60185	60185					-0.18963664430566496
WEGITRQLL	9	Unmodified	_WEGITRQLL_					0	0	0		ENST00000526015.5_1_11:93466621-93467809:-|nuORF	ENST00000526015.5_1_11:93466621-93467809:-|nuORF	ENST00000526015.5_1_11:93466621-93467809:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	372.9451904296875	3	372.545108	1114.61349	0.40438	0.00015065	0.051852	1.9317E-05	0.45623	0.00016997	372.54505240683505	56.92	0.66354	56.92	56.65	57.313	0					29	12	3	0	0	0	0.74477	1	20396	20396		2.9952	0.49676	1	5551300			61809	13076	45094	45449	60186	60186					0.06077120742929765
WEITWVSDHCR	11	Unmodified	_WEITWVSDHCR_					0	0	0		ENST00000521195.1_1_8:104320096-104343734:+|nuORF;nc|ENSG00000164930|O60353-2|FZD6;ENSG00000164930|ENST00000358755|FZD6	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	MSMS	A375_MHC_IP_R1	1	716.3302612304688	2	716.327336	1430.64012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.19	1	144.19	143.69	144.69	0								0	0	0	0.16334	1	55299	55299		1.3295	0	1				61810	6893	45095	45450	60187	60187					-0.05797558428025695
WEKDCIQDLKW	11	Unmodified	_WEKDCIQDLKW_					0	0	0			REV__ENST00000511524.1_1_3:139654198-140275504:+|nuORF	REV__ENST00000511524.1_1_3:139654198-140275504:+|nuORF	MSMS	A375_MHC_IP_R2	2	488.46905517578125	3	488.571105	1462.69149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.444	1	55.194	54.694	55.694	0.75075								0	0	0	0.1628	1	20544	20544		4.1166	1.6818	1		+		61811	20067	45096	45451	60188	60188					-0.021352344539991464
WEKFIFWDHHY	11	Unmodified	_WEKFIFWDHHY_					0	0	0			REV__nc|ENSG00000109572|P51790-4|CLCN3	REV__nc|ENSG00000109572|P51790-4|CLCN3	MSMS	A375_MHC_IP_R2	2	536.635986328125	3	536.585854	1606.73573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.167	1	87.9	87.4	88.4	0.733								0	0	0	0.16358	1	33148	33148		0.094841	0	1		+		61812	17582	45097	45452	60189	60189					-0.043364622454873825
WEKSIMKV	8	Unmodified	_WEKSIMKV_					0	0	0		nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-SECPEP	A375_MHC_IP_R2	2	510.23565673828125	2	510.78097	1019.54739	-0.67922	-0.00034693	-0.51105	-0.00026104	-1.1903	-0.00060797	510.78054512277214	88.674	0.55778	89.406	89.077	89.635	0.7318					14	10	2	0	0	0	0.94479	1	33678	33678		8.5933	8.5933	1	2024800			61813	3856	45098	45453	60190	60190					0.0383958857653397
WEKYHYVLWKE	11	Unmodified	_WEKYHYVLWKE_					0	0	0		ENST00000355774.6_2_14:75497265-75497367:-|nuORF	ENST00000355774.6_2_14:75497265-75497367:-|nuORF	ENST00000355774.6_2_14:75497265-75497367:-|nuORF	MSMS	A375_MHC_IP_R2	2	790.8978881835938	2	790.898451	1579.78235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.09	1	141.13	140.63	141.63	0.04216								0	0	0	0.1636	1	55201	55201		0	0	1				61814	10957	45099	45454	60191	60191					0.0156497758578098
WELKPEYRHY	10	Unmodified	_WELKPEYRHY_					0	0	0		ENSG00000188342|ENST00000340473|GTF2F2	ENSG00000188342|ENST00000340473|GTF2F2	ENSG00000188342|ENST00000340473|GTF2F2	MULTI-SECPEP	A375_MHC_IP_R2	2	474.6794128417969	3	474.238455	1419.69353	-0.62794	-0.00029779	-0.34189	-0.00016214	-0.96983	-0.00045993	474.23824939166224	40.411	0.30364	41.186	41.031	41.335	0.77451					9	5	2	0	0	0	0.94447	1	14990	14990		2.8433	0.4085	1	2042200			61815	8903	45100	45455	60192	60192					0.0004756234611704713
WELKPEYRHY	10	Unmodified	_WELKPEYRHY_					0	0	0		ENSG00000188342|ENST00000340473|GTF2F2	ENSG00000188342|ENST00000340473|GTF2F2	ENSG00000188342|ENST00000340473|GTF2F2	MULTI-MATCH	A375_MHC_IP_R1	1		3	474.238455	1419.69353	-0.71449	-0.00033884	-0.057778	-2.74E-05	-0.77227	-0.00036624	474.2382181579863	41.144	0.40393	41.144	40.913	41.317	0	-0.020573	0.0002478	NaN	2.8433	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2022200			61816	8903	45100	45455							0.0004756234611704713
WENSFVSVY	9	Unmodified	_WENSFVSVY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R1	1	566.161865234375	2	565.761289	1129.50803	-0.13902	-7.8653E-05	0.07724	4.3699E-05	-0.061782	-3.4954E-05	565.7612676765558	107.94	0.71088	107.94	107.7	108.41	0					31	13	4	0	0	0	0.06083	1	39584	39584		60.074	39.659	1	4231600			61817	7864	45101	45456	60193	60193					-0.05154840173327102
WENSFVSVY	9	Unmodified	_WENSFVSVY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R2	2	566.1610717773438	2	565.761289	1129.50803	-0.50056	-0.0002832	-0.41327	-0.00023381	-0.91383	-0.00051701	565.7611460441042	107.24	0.91448	107.99	107.64	108.56	0.75436					36	17	3	0	0	0	0.06083	1	40487	40487		60.074	41.939	1	2989200			61818	7864	45101	45456	60194	60194					-0.05154840173327102
WEQGFSQSF	9	Unmodified	_WEQGFSQSF_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-SECPEP	A375_MHC_IP_R1	1	558.6431274414062	2	558.243264	1114.47197	-0.66397	-0.00037066	-0.11248	-6.2791E-05	-0.77645	-0.00043345	558.2431259982468	86.797	0.91365	86.797	86.477	87.39	0					48	17	4	0	0	0	0.011031	1	31803	31803		140.63	140.63	1	13847000			61819	7257	45102	45457	60195	60195					-0.08068297350178
WEQGFSQSF	9	Unmodified	_WEQGFSQSF_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-SECPEP	A375_MHC_IP_R2	2	558.642333984375	2	558.243264	1114.47197	-0.56085	-0.00031309	-0.042539	-2.3747E-05	-0.60339	-0.00033684	558.2431759594223	86.219	0.91743	86.952	86.592	87.509	0.73301					45	17	4	0	0	0	0.0059578	1	32739	32739		173.69	118.91	1	14605000			61820	7257	45102	45457	60196	60196					-0.08068297350178
WERKYREWYEK	11	Unmodified	_WERKYREWYEK_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;RBBP6|p.E1056Nfs*55|1|0.28|ENSG00000122257|chr16:24569855-24569855|T/-|frameshift_variant	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MSMS	A375_MHC_IP_R1	1	836.8121337890625	2	836.915164	1671.81578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.039	1	59.039	58.539	59.539	0								0	0	0	0.16355	1	21225	21225		0.26902	0.26902	1				61821	3771	45103	45458	60197	60197					0.006739793577253295
WERYKREWERY	11	Unmodified	_WERYKREWERY_					0	0	0			REV__RBBP6|p.E1056Nfs*55|1|0.28|ENSG00000122257|chr16:24569855-24569855|T/-|frameshift_variant	REV__RBBP6|p.E1056Nfs*55|1|0.28|ENSG00000122257|chr16:24569855-24569855|T/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	567.6605224609375	3	567.614584	1699.82192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.365	1	96.115	95.615	96.615	0.75045								0	0	0	0.1635	1	36228	36228		0.50596	0.41111	1		+		61822	18198	45104	45459	60198	60198					4.975892352376832E-06
WETVPISCPY	10	Unmodified	_WETVPISCPY_					0	0	0		ENST00000256935.12_1_5:169509883-169510066:+|nuORF	ENST00000256935.12_1_5:169509883-169510066:+|nuORF	ENST00000256935.12_1_5:169509883-169510066:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	399.589111328125	3	398.854842	1193.5427	-0.15172	-6.0514E-05	0.18621	7.4272E-05	0.034493	1.3758E-05	398.8549761171052	20.18	0.45527	20.18	20.03	20.485	0					17	8	3	0	0	0	0.91556	1	5154	5154		5.7834	0	1	2475900			61823	10245	45105	45460	60199	60199					-0.04633340356872395
WEVDVQGSKAY	11	Unmodified	_WEVDVQGSKAY_					0	0	0		ENST00000487982.5_1_7:65541068-65551857:+|nuORF;ENST00000496336.1_1_7:65540843-65547929:+|nuORF;nc|ENSG00000126522|P04424-3|ASL;nc|ENSG00000126522|P04424-2|ASL;ENSG00000126522|ENST00000304874|ASL	ENST00000487982.5_1_7:65541068-65551857:+|nuORF	ENST00000487982.5_1_7:65541068-65551857:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	641.7091064453125	2	641.309135	1280.60372	-0.64891	-0.00041615	0.30311	0.00019439	-0.3458	-0.00022176	641.3093060276219	58.785	0.66176	58.785	58.43	59.092	0					27	12	3	0	0	0	3.2082E-08	1	21101	21101		160.97	122.79	1	7432900			61824	12608	45106	45461	60200	60200					-0.025361120530760672
WEVDVQGSKAY	11	Unmodified	_WEVDVQGSKAY_					0	0	0		ENST00000487982.5_1_7:65541068-65551857:+|nuORF;ENST00000496336.1_1_7:65540843-65547929:+|nuORF;nc|ENSG00000126522|P04424-3|ASL;nc|ENSG00000126522|P04424-2|ASL;ENSG00000126522|ENST00000304874|ASL	ENST00000487982.5_1_7:65541068-65551857:+|nuORF	ENST00000487982.5_1_7:65541068-65551857:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	641.708251953125	2	641.309135	1280.60372	-1.012	-0.00064903	0.26547	0.00017025	-0.74658	-0.00047879	641.3093168415548	58.17	0.70912	58.919	58.528	59.237	0.74894					26	13	3	0	0	0	1.7481E-05	2	21974	21974;22119		146.48	115.21	1	6862100			61825	12608	45106	45461	60201;60202	60201					-0.025361120530760672
WEVEVGDRTSW	11	Unmodified	_WEVEVGDRTSW_					0	0	0		ENSG00000154370|ENST00000284551|TRIM11;nc|ENSG00000154370|Q96F44-3|TRIM11	ENSG00000154370|ENST00000284551|TRIM11	ENSG00000154370|ENST00000284551|TRIM11	MULTI-MSMS	A375_MHC_IP_R1	1	682.7169799804688	2	682.317491	1362.62043	-0.55359	-0.00037772	0.11037	7.531E-05	-0.44322	-0.00030241	682.3174454163749	82.96	0.40207	82.96	82.722	83.125	0					17	7	3	0	0	0	0.5509	1	30393	30393		27.129	12.723	1	1419300			61826	6084	45107	45462	60203	60203					-0.04637611167140676
WEVKSVPQL	9	Unmodified	_WEVKSVPQL_					0	0	0		ENST00000470131.5_2_3:167452076-167452653:-|nuORF;ENST00000473645.6_2_3:167443219-167452692:-|nuORF;ENST00000497056.6_2_3:167437995-167452692:-|nuORF	ENST00000470131.5_2_3:167452076-167452653:-|nuORF	ENST00000470131.5_2_3:167452076-167452653:-|nuORF	MSMS	A375_MHC_IP_R1	1	543.6369018554688	2	543.303124	1084.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.16	1	116.16	115.66	116.66	0								0	0	0	0.15486	1	42605	42605		11.64	0.81637	1				61827	12331	45108	45463	60204	60204					0.05278315994382865
WFCCCCCCGAP	11	Unmodified	_WFCCCCCCGAP_					0	0	0			REV__nc|ENSG00000143643|Q8NBP0-2|TTC13	REV__nc|ENSG00000143643|Q8NBP0-2|TTC13	MSMS	A375_MHC_IP_R2	2	598.174560546875	2	598.169646	1194.32474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.086	1	99.846	99.346	100.35	0.75977								0	0	0	0.16353	1	37588	37588		0.35063	0	1		+		61828	19378	45109	45464	60205	60205					-0.26464959410168376
WFCLLYQWNYY	11	Unmodified	_WFCLLYQWNYY_					0	0	0			REV__IL13RA2|p.S156F|1|0.19|ENSG00000123496|chrX:115013823-115013823|G/A|missense_variant	REV__IL13RA2|p.S156F|1|0.19|ENSG00000123496|chrX:115013823-115013823|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	533.6578369140625	3	533.576079	1597.70641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.18	1	61.18	60.68	61.68	0								0	0	0	0.16334	1	22048	22048		1.3296	0.92138	1		+		61829	26787	45110	45465	60206	60206					-0.06853742585985856
WFDKWTDSQRR	11	Unmodified	_WFDKWTDSQRR_					0	0	0		ENST00000517436.5_1_8:28309874-28347735:-|nuORF;ENSG00000214050|ENST00000380254|FBXO16	ENST00000517436.5_1_8:28309874-28347735:-|nuORF	ENST00000517436.5_1_8:28309874-28347735:-|nuORF	MSMS	A375_MHC_IP_R2	2	762.8707885742188	2	762.870756	1523.72696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.58	1	120.11	119.61	120.61	0.5321								0	0	0	0.16179	1	45560	45560		9.3831	4.4861	1				61830	9602	45111	45466	60207	60207					-0.013954358819773915
WFDPKTRDIR	10	Unmodified	_WFDPKTRDIR_					0	0	0		nc|ENSG00000182224|Q6P9G0-2|CYB5D1;ENSG00000182224|ENST00000332439|CYB5D1	nc|ENSG00000182224|Q6P9G0-2|CYB5D1	nc|ENSG00000182224|Q6P9G0-2|CYB5D1	MSMS	A375_MHC_IP_R1	1	667.4443969726562	2	667.354211	1332.69387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.336	1	72.336	71.836	72.836	0								0	0	0	0.15591	1	26315	26315		1.6526	0.17072	1				61831	8391	45112	45467	60208	60208					0.0408298206600648
WFDYILIGFYI	11	Unmodified	_WFDYILIGFYI_					0	0	0			REV__tr|U7SNK8|U7SNK8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02026PE=4SV=1	REV__tr|U7SNK8|U7SNK8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02026PE=4SV=1	MSMS	A375_MHC_IP_R2	2	725.3681030273438	2	725.376289	1448.73803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.09	1	144.11	143.61	144.61	0.024414								0	0	0	0.16353	1	56293	56293		0.35063	0	1		+		61832	28334	45113	45468	60209	60209					0.03160573439595282
WFEMDGLRTKR	11	Unmodified	_WFEMDGLRTKR_					0	0	0			REV__FAM174A|p.R155Lfs*11|1|0.14|ENSG00000174132|chr5:100562073-100562074|-/AGACT|frameshift_variant	REV__FAM174A|p.R155Lfs*11|1|0.14|ENSG00000174132|chr5:100562073-100562074|-/AGACT|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	479.9798889160156	3	480.246844	1437.7187	-0.56857	-0.00027305	3.9723	0.0019077	3.4037	0.0016346	480.5831867152384	19.249	0.69882	19.249	19.23	19.928	0					18	14	2	0	0	0	0.99945	1	5032	5032		4.1166	1.8639	1	34690000	+		61833	26610	45114	45469	60210	60210					0.017352938770272885
WFFLTYNQIHM	11	Unmodified	_WFFLTYNQIHM_					0	0	0		ENST00000372571.5_1_1:42654917-42655043:-|nuORF	ENST00000372571.5_1_1:42654917-42655043:-|nuORF	ENST00000372571.5_1_1:42654917-42655043:-|nuORF	MSMS	A375_MHC_IP_R2	2	500.474853515625	3	500.57619	1498.70674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.703	1	69.438	68.938	69.938	0.73511								0	0	0	0.16334	1	26034	26034		0.45452	0	1				61834	11204	45115	45470	60211	60211					-0.022663228661485846
WFGYLHIEKCI	11	Unmodified	_WFGYLHIEKCI_					0	0	0			REV__ST8SIA3|p.E314K|1|0.43|ENSG00000177511|chr18:57360074-57360074|G/A|missense_variant	REV__ST8SIA3|p.E314K|1|0.43|ENSG00000177511|chr18:57360074-57360074|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	352.9205627441406	4	352.932509	1407.70093	-0.5285	-0.00018653	-0.39638	-0.0001399	-0.92489	-0.00032642	352.9323502176115	19.699	0.60713	20.31	19.942	20.549	0.61029					14	11	2	0	0	0	0.72651	1	5947	5947		12.228	4.2822	1	1090700	+		61835	28053	45116	45471	60212	60212					0.013385786222215756
WFHERGQEF	9	Unmodified	_WFHERGQEF_					0	0	0		nc|ENSG00000072682|O15460|P4HA2;ENSG00000072682|ENST00000360568|P4HA2;ENST00000474628.1_1_5:131528705-131530745:-|nuORF	nc|ENSG00000072682|O15460|P4HA2	nc|ENSG00000072682|O15460|P4HA2	MULTI-MSMS	A375_MHC_IP_R1	1	412.9247131347656	3	412.524595	1234.55196	0.73922	0.00030494	-0.5905	-0.0002436	0.14871	6.1347E-05	412.52447587064745	44.791	0.81136	44.791	44.523	45.334	0					23	15	3	0	0	0	0.25114	1	15664	15664		34.222	21.366	1	1977100			61836	1543	45117	45472	60213	60213					-0.055938109563385296
WFHERGQEF	9	Unmodified	_WFHERGQEF_					0	0	0		nc|ENSG00000072682|O15460|P4HA2;ENSG00000072682|ENST00000360568|P4HA2;ENST00000474628.1_1_5:131528705-131530745:-|nuORF	nc|ENSG00000072682|O15460|P4HA2	nc|ENSG00000072682|O15460|P4HA2	MULTI-MSMS	A375_MHC_IP_R2	2	412.9243469238281	3	412.524595	1234.55196	0.21986	9.0698E-05	-0.59211	-0.00024426	-0.37225	-0.00015356	412.5243345724901	43.906	0.50428	44.675	44.43	44.934	0.7691					20	9	3	0	0	0	0.4875	1	16406	16406		20.415	12.937	1	2817000			61837	1543	45117	45472	60214	60214					-0.055938109563385296
WFIFHGMYVYI	11	Unmodified	_WFIFHGMYVYI_					0	0	0			REV__ENST00000267859.7_1_15:59955471-59955648:-|nuORF	REV__ENST00000267859.7_1_15:59955471-59955648:-|nuORF	MSMS	A375_MHC_IP_R2	2	492.4775390625	3	492.577531	1474.71076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.218	1	36.989	36.489	37.489	0.7709								0	0	0	0.1629	1	13183	13183		1.4551	0.34536	1		+		61838	23263	45118	45473	60215	60215					-0.007602333723980337
WFIFWAWLINM	11	Unmodified	_WFIFWAWLINM_					0	0	0			REV__ENSG00000213088|ENST00000368122|ACKR1	REV__ENSG00000213088|ENST00000368122|ACKR1	MULTI-SECPEP	A375_MHC_IP_R1	1	763.7139282226562	2	763.886301	1525.75805	-0.15138	-0.00011564	0.62234	0.0004754	0.47096	0.00035976	763.8870279737523	116.16	0.81411	116.16	115.58	116.4	0					20	15	2	0	0	0	0.99738	1	42483	42483		2.7352	1.2533	1	9791600	+		61839	22613	45119	45474	60216	60216					0.01620045898562239
WFILFNFFFL	10	Unmodified	_WFILFNFFFL_					0	0	0			REV__ENST00000324198.10_1_22:26120814-26120889:+|nuORF	REV__ENST00000324198.10_1_22:26120814-26120889:+|nuORF	MSMS	A375_MHC_IP_R2	2	697.082275390625	2	697.37081	1392.72707	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.73	1	118.34	117.84	118.84	0.60909								0	0	0	0.15332	1	44584	44584		10.074	2.465	1		+		61840	23587	45120	45475	60217	60217					0.0464121585596331
WFKRWREPVRK	11	Unmodified	_WFKRWREPVRK_					0	0	0		ARL13B|p.K347Nfs*2|1|0.27|ENSG00000169379|chr3:94049418-94049419|AG/-|frameshift_variant;ENSG00000169379|ENST00000394222|ARL13B	ARL13B|p.K347Nfs*2|1|0.27|ENSG00000169379|chr3:94049418-94049419|AG/-|frameshift_variant	ARL13B|p.K347Nfs*2|1|0.27|ENSG00000169379|chr3:94049418-94049419|AG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	530.3710327148438	3	529.972155	1586.89463	-0.66387	-0.00035183	-1.487	-0.00078805	-2.1508	-0.0011399	529.9712368948556	27.568	0.25232	27.568	27.432	27.684	0					7	4	2	0	0	0	0.73818	1	8419	8419		1.1098	1.0149	1	2396000			61841	178	45121	45476	60218	60218					0.12466296173283808
WFKRWREPVRK	11	Unmodified	_WFKRWREPVRK_					0	0	0		ARL13B|p.K347Nfs*2|1|0.27|ENSG00000169379|chr3:94049418-94049419|AG/-|frameshift_variant;ENSG00000169379|ENST00000394222|ARL13B	ARL13B|p.K347Nfs*2|1|0.27|ENSG00000169379|chr3:94049418-94049419|AG/-|frameshift_variant	ARL13B|p.K347Nfs*2|1|0.27|ENSG00000169379|chr3:94049418-94049419|AG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	530.4467163085938	3	529.972155	1586.89463	-0.81455	-0.00043169	-1.0789	-0.00057177	-1.8934	-0.0010035	529.9714797602925	26.859	0.30842	27.519	27.363	27.671	0.65992					8	5	2	0	0	0	0.73679	1	9127	9127		2.4348	2.0265	1	1622400			61842	178	45121	45476	60219	60219					0.12466296173283808
WFLLLIRQIFH	11	Unmodified	_WFLLLIRQIFH_					0	0	0		ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	MSMS	A375_MHC_IP_R2	2	743.4383544921875	2	743.440089	1484.86563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.76	1	116.45	115.95	116.95	0.68999								0	0	0	0.16331	1	43639	43639		1.4819	0.28856	1				61843	6943	45122	45477	60220	60220					0.14258758824303186
WFPFVYSL	8	Unmodified	_WFPFVYSL_					0	0	0		ENST00000322940.10_1_9:111702093-111702270:+|nuORF	ENST00000322940.10_1_9:111702093-111702270:+|nuORF	ENST00000322940.10_1_9:111702093-111702270:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	530.2192993164062	2	529.770929	1057.5273	-0.65268	-0.00034577	1.3058	0.00069177	0.65311	0.000346	529.7711665824137	32.857	0.25377	33.594	33.417	33.671	0.73692					6	4	2	0	0	0	0.90224	1	11680	11680		26.341	10.494	1	1008400			61844	10708	45123	45478	60221	60221					0.0008416090822720435
WFQKWWPQWWL	11	Unmodified	_WFQKWWPQWWL_					0	0	0			REV__chr12:54282823-54283812|100|241.53|0.0|24.53|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54282823-54283812|100|241.53|0.0|24.53|+|1|HNRNPA1,HNRNPA1|1	MSMS	A375_MHC_IP_R2	2	845.9232788085938	2	845.919521	1689.82449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.64	1	123.97	123.47	124.47	0.32969								0	0	0	0.16358	1	47601	47601		0.30703	0.03801	1		+		61845	15691	45124	45479	60222	60222					0.007169977848434428
WFRRCNKYRLF	11	Unmodified	_WFRRCNKYRLF_					0	0	0			REV__ENSG00000170791|ENST00000355315|CHCHD7	REV__ENSG00000170791|ENST00000355315|CHCHD7	MSMS	A375_MHC_IP_R2	2	795.1282348632812	2	794.919529	1587.82451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.95	1	118.56	118.06	119.06	0.60909								0	0	0	0.16297	1	44721	44721		3.2813	0.54611	1		+		61846	21019	45125	45480	60223	60223					0.054106745131775824
WFRRFRQRLHP	11	Unmodified	_WFRRFRQRLHP_					0	0	0		ENST00000243918.9_1_20:43991669-43991846:+|nuORF	ENST00000243918.9_1_20:43991669-43991846:+|nuORF	ENST00000243918.9_1_20:43991669-43991846:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	400.6469421386719	4	400.478643	1597.88547	-0.47846	-0.00019161	1.0375	0.0004155	0.55905	0.00022389	400.72983505747567	25.858	0.50596	25.858	25.562	26.068	0					12	9	2	0	0	0	1.0015	1	7595	7595		0.094841	0.094841	1	1661200			61847	10174	45126	45481	60224	60224					0.11043947607640803
WFRWAIRWFYE	11	Unmodified	_WFRWAIRWFYE_					0	0	0			REV__ENST00000419746.5_1_2:179403628-179404009:+|nuORF	REV__ENST00000419746.5_1_2:179403628-179404009:+|nuORF	MSMS	A375_MHC_IP_R2	2	830.5545043945312	2	830.414603	1658.81465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119	1	119.61	119.11	120.11	0.60909								0	0	0	0.16354	1	45265	45265		0.30703	0.30703	1		+		61848	24566	45127	45482	60225	60225					0.011598097794376372
WFTMSFSYY	9	Unmodified	_WFTMSFSYY_					0	0	0		nc|ENSG00000159164|Q7L0J3-2|SV2A;ENSG00000159164|ENST00000369146|SV2A	nc|ENSG00000159164|Q7L0J3-2|SV2A	nc|ENSG00000159164|Q7L0J3-2|SV2A	MULTI-MSMS	A375_MHC_IP_R2	2	616.659423828125	2	616.260068	1230.50558	-0.92865	-0.00057229	-1.0134	-0.00062451	-1.942	-0.0011968	616.2597314875111	61.813	0.80622	62.556	62.068	62.874	0.74263					41	15	4	0	0	0	0.2264	1	23408	23408		36.044	15.63	1	7370500			61849	6353	45128	45483	60226	60226					-0.10045011902616352
WFTRMFAYFRR	11	Unmodified	_WFTRMFAYFRR_					0	0	0		nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-3|FOXP1;nc|ENSG00000137166|Q8IVH2-3|FOXP4;nc|ENSG00000285708|Q9H334-7|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000137166|Q8IVH2-2|FOXP4;nc|ENSG00000285708|Q9H334-4|FOXP1;ENSG00000137166|ENST00000307972|FOXP4;nc|ENSG00000285708|Q9H334-8|FOXP1	nc|ENSG00000285708|Q9H334-6|FOXP1	nc|ENSG00000285708|Q9H334-6|FOXP1	MSMS	A375_MHC_IP_R1	1	527.6639404296875	3	527.602962	1579.78706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.964	1	47.964	47.464	48.464	0								0	0	0	0.16124	1	16893	16893		6.6235	6.1175	1				61850	3253	45129	45484	60227	60227					0.020355832475388524
WFWDRRRRRNR	11	Unmodified	_WFWDRRRRRNR_					0	0	0			REV__ENST00000361972.8_1_10:7212945-7217999:-|nuORF	REV__ENST00000361972.8_1_10:7212945-7217999:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	568.205322265625	3	568.645324	1702.91414	-0.11506	-6.5427E-05	-3.2285	-0.0018359	-3.3435	-0.0019013	568.6441962384879	42.866	0.55904	42.866	42.638	43.197	0					11	10	2	0	0	0	1.0015	1	14823	14823		0.40827	0.31342	1	1377600	+		61851	23927	45130	45485	60228	60228					0.09080065236753398
WFWDRRRRRNR	11	Unmodified	_WFWDRRRRRNR_					0	0	0			REV__ENST00000361972.8_1_10:7212945-7217999:-|nuORF	REV__ENST00000361972.8_1_10:7212945-7217999:-|nuORF	MSMS	A375_MHC_IP_R2	2	568.6685180664062	3	568.645324	1702.91414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.916	1	41.691	41.191	42.191	0.77451								0	0	0	0.1635	1	15166	15166		0.50596	0.41111	1		+		61852	23927	45130	45485	60229	60229					0.09080065236753398
WFWFFWTVYMW	11	Unmodified	_WFWFFWTVYMW_					0	0	0			REV__ENSG00000186908|ENST00000426126|ZDHHC17	REV__ENSG00000186908|ENST00000426126|ZDHHC17	MSMS	A375_MHC_IP_R1	1	849.9119873046875	2	849.883758	1697.75296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.26	1	124.26	123.76	124.76	0								0	0	0	0.1636	1	46726	46726		0	0	1		+		61853	21995	45131	45486	60230	60230					-0.06800257964050616
WFWKLWWWSWR	11	Unmodified	_WFWKLWWWSWR_					0	0	0		chr12:54282611-54283827|472|64.71|0.0|22.63|+|1|HNRNPA1,HNRNPA1|1	chr12:54282611-54283827|472|64.71|0.0|22.63|+|1|HNRNPA1,HNRNPA1|1	chr12:54282611-54283827|472|64.71|0.0|22.63|+|1|HNRNPA1,HNRNPA1|1	MSMS	A375_MHC_IP_R2	2	884.345703125	2	883.940788	1765.86702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.84	1	115.53	115.03	116.03	0.68999								0	0	0	0.16355	1	43291	43291		0.26902	0	1				61854	410	45132	45487	60231	60231					0.014723929130468605
WFWKLWWWSWR	11	Unmodified	_WFWKLWWWSWR_					0	0	0		chr12:54282611-54283827|472|64.71|0.0|22.63|+|1|HNRNPA1,HNRNPA1|1	chr12:54282611-54283827|472|64.71|0.0|22.63|+|1|HNRNPA1,HNRNPA1|1	chr12:54282611-54283827|472|64.71|0.0|22.63|+|1|HNRNPA1,HNRNPA1|1	MSMS	A375_MHC_IP_R2	2	884.0101928710938	2	883.940788	1765.86702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.45	1	119.06	118.56	119.56	0.60909								0	0	0	0.16179	1	44966	44966		9.3831	6.1018	1				61855	410	45132	45487	60232	60232					0.014723929130468605
WFWWHWQGEGR	11	Unmodified	_WFWWHWQGEGR_					0	0	0		ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	MULTI-MSMS	A375_MHC_IP_R1	1	788.2567138671875	2	787.857452	1573.70035	-0.52315	-0.00041217	0.056281	4.4342E-05	-0.46687	-0.00036783	787.857493917309	76.604	0.55904	76.604	76.319	76.878	0					26	10	3	0	0	0	0.73807	1	27894	27894		1.1933	0	1	6311000			61856	8211	45133	45488	60233	60233					-0.06355079982654388
WFWWLEYYYT	10	Unmodified	_WFWWLEYYYT_					0	0	0			REV__ENST00000441673.2_1_2:74684653-74687805:+|nuORF	REV__ENST00000441673.2_1_2:74684653-74687805:+|nuORF	MSMS	A375_MHC_IP_R1	1	778.847900390625	2	778.847896	1555.68124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.89	1	144.89	144.39	145.39	0								0	0	0	0.15642	1	55554	55554		0	0	1		+		61857	22774	45134	45489	60234	60234					-0.0743747411690947
WFYFRIRFYLM	11	Unmodified	_WFYFRIRFYLM_					0	0	0			REV__TYK2|p.R110W|1|0.24|ENSG00000105397|chr19:10368192-10368192|G/A|missense_variant	REV__TYK2|p.R110W|1|0.24|ENSG00000105397|chr19:10368192-10368192|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	821.6001586914062	2	821.423582	1640.83261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.52	1	124.52	124.02	125.02	0								0	0	0	0.16334	1	46928	46928		1.3295	0.13619	1		+		61858	28935	45135	45490	60235	60235					0.037828087099342156
WGADQLGKLF	10	Unmodified	_WGADQLGKLF_					0	0	0			REV__nc|ENSG00000140688|Q96GQ5-2|RUSF1	REV__nc|ENSG00000140688|Q96GQ5-2|RUSF1	MULTI-SECPEP	A375_MHC_IP_R1	1	568.20068359375	2	567.800749	1133.58694	0.13156	7.4701E-05	0.0066134	3.7551E-06	0.13818	7.8456E-05	567.8005784656722	69.656	0.40508	69.656	69.427	69.832	0					12	7	2	0	0	0	0.77204	1	25308	25308		27.629	13.723	1	2094900	+		61859	19227	45136	45491	60236	60236					0.025494318515939085
WGDQNDSSV	9	Unmodified	_WGDQNDSSV_					0	0	0		ENSG00000038532|ENST00000409790|CLEC16A;nc|ENSG00000038532|Q2KHT3-2|CLEC16A	ENSG00000038532|ENST00000409790|CLEC16A	ENSG00000038532|ENST00000409790|CLEC16A	MULTI-MSMS	A375_MHC_IP_R2	2	504.6556701660156	2	504.206878	1006.3992	-0.58426	-0.00029459	-1.7054	-0.00085986	-2.2896	-0.0011545	504.7065450732709	90.157	0.56132	90.889	90.545	91.106	0.7318					20	10	3	0	0	0	0.65721	1	34281	34281		10.824	0	1	849470			61860	1155	45137	45492	60237	60237					-0.10374051143605811
WGEVPRADL	9	Unmodified	_WGEVPRADL_					0	0	0		nc|ENSG00000188877|Q6S8J7-2|POTEA;nc|ENSG00000188877|Q6S8J7|POTEA	nc|ENSG00000188877|Q6S8J7-2|POTEA	nc|ENSG00000188877|Q6S8J7-2|POTEA	MULTI-SECPEP	A375_MHC_IP_R2	2	522.1690673828125	2	521.769448	1041.52434	-0.62483	-0.00032602	-0.18758	-9.7876E-05	-0.81241	-0.00042389	521.7693701300652	75.487	0.5619	76.227	75.925	76.487	0.74052					18	10	2	0	0	0	0.75466	1	28668	28668		7.9102	3.5809	1	3214400			61861	14827	45138	45493	60238	60238					0.005242857834218739
WGGGGGAA	8	Unmodified	_WGGGGGAA_					0	0	0		ENST00000563893.5_1_16:29874076-29874319:-|nuORF	REV__ENSG00000062524|ENST00000263800|LTK	REV__ENSG00000062524|ENST00000263800|LTK	MULTI-SECPEP	A375_MHC_IP_R1	1	632.7574462890625	1	632.2787	631.271424	-0.97578	-0.00061696	-0.49366	-0.00031213	-1.4694	-0.00092909	632.2782238280098	138.86	0.70439	138.86	138.51	139.22	0					22	13	2	0	0	0	0.972	1	53280	53280		0	0	1	732940			61862	16459	45139	45494	60239	60239					-0.058961021563391114
WGGGGGGG	8	Unmodified	_WGGGGGGG_					0	0	0		ENSG00000171262|ENST00000397609|FAM98B	ENSG00000171262|ENST00000397609|FAM98B	ENSG00000171262|ENST00000397609|FAM98B	MULTI-SECPEP	A375_MHC_IP_R2	2	604.2583618164062	1	604.2474	603.240124	-0.34119	-0.00020617	0.90645	0.00054772	0.56525	0.00034155	604.2481292394148	134.57	0.40648	134.71	134.44	134.85	0.13901					10	7	2	0	0	0	0.972	1	52887	52887		0	0	1	1396900			61863	7589	45140	45495	60240	60240					-0.07736675190415099
WGGGLGVL	8	Unmodified	_WGGGLGVL_					0	0	0			REV__ENST00000257915.9_1_12:51566268-51566466:-|nuORF	REV__ENST00000257915.9_1_12:51566268-51566466:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	380.11346435546875	2	379.713414	757.412274	0.23568	8.9489E-05	0.55783	0.00021182	0.79351	0.00030131	379.71350745085397	94.048	0.55696	94.793	94.463	95.02	0.74474					17	10	2	0	0	0	0.77781	1	35737	35737		2.8892	0	1	2740700	+		61864	23162	45141	45496	60241	60241					0.023864764970994656
WGHPDSDGGSE	11	Unmodified	_WGHPDSDGGSE_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	A375_MHC_IP_R1	1	381.8091125488281	3	381.816103	1142.42648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.251	1	18.251	17.751	18.751	0								0	0	0	0.16353	1	4343	4343		0.094841	0	1				61865	6151;14694	45142	45497	60242	60242					-0.1390356760321083
WGIKRRIW	8	Unmodified	_WGIKRRIW_					0	0	0		ENST00000556808.1_1_X:53114140-53114371:+|nuORF	ENST00000556808.1_1_X:53114140-53114371:+|nuORF	ENST00000556808.1_1_X:53114140-53114371:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	371.9886474609375	3	372.225932	1113.65597	0.18565	6.9105E-05	1.7114	0.00063703	1.8971	0.00070614	372.56082136322925	18.882	0.34496	19.485	19.438	19.783	0.60308					21	7	4	0	0	0	0.972	1	5860	5860		6.7232	0.51738	1	19557000			61866	13447	45143	45498	60243	60243					0.1036856066184555
WGKRPGAGGL	10	Unmodified	_WGKRPGAGGL_					0	0	0			REV__ENST00000320634.7_1_12:50261247-50261607:-|nuORF	REV__ENST00000320634.7_1_12:50261247-50261607:-|nuORF	MSMS	A375_MHC_IP_R2	2	499.45465087890625	2	499.780151	997.545748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.768	1	18.364	17.864	18.864	0.59616								0	0	0	0.15642	1	5244	5244		0	0	1		+		61867	23562	45144	45499	60244	60244					0.04687715602813114
WGPMKEPTI	9	Unmodified	_WGPMKEPTI_					0	0	0		nc|ENSG00000180815|Q6ZN16-3|MAP3K15;ENST00000518578.5_1_X:19378869-19431499:-|nuORF;nc|ENSG00000180815|Q6ZN16-2|MAP3K15;ENSG00000180815|ENST00000338883|MAP3K15	nc|ENSG00000180815|Q6ZN16-3|MAP3K15	nc|ENSG00000180815|Q6ZN16-3|MAP3K15	MULTI-MSMS	A375_MHC_IP_R2	2	530.1892700195312	2	529.770603	1057.52665	-1.1438	-0.00060597	0.29922	0.00015852	-0.84462	-0.00044746	529.7707648552511	53.026	0.66002	53.777	53.487	54.147	0.75105					23	12	2	0	0	0	0.46038	1	20024	20024		21.747	0	1	3377200			61868	12973	45145	45500	60245	60245					0.00018998196878783347
WGPQGGGGG	9	Unmodified	_WGPQGGGGG_					0	0	0		ENST00000535981.1_1_11:64071127-64072115:+|nuORF	ENST00000535981.1_1_11:64071127-64072115:+|nuORF	ENST00000535981.1_1_11:64071127-64072115:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	772.7389526367188	1	772.337278	771.330001	-0.82819	-0.00063965	1.4527	0.001122	0.62455	0.00048236	772.3383003856362	143.86	0.2012	143.86	143.73	143.94	0					5	3	2	0	0	0	0.77827	1	55197	55197		0	0	1	1932900			61869	13235	45146	45501	60246	60246					-0.06481045581836042
WGPQGGGGG	9	Unmodified	_WGPQGGGGG_					0	0	0		ENST00000535981.1_1_11:64071127-64072115:+|nuORF	ENST00000535981.1_1_11:64071127-64072115:+|nuORF	ENST00000535981.1_1_11:64071127-64072115:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	772.337278	771.330001	-0.7476	-0.0005774	1.9146	0.0014787	1.167	0.00090131	772.3386244599044	143.89	0.19893	143.92	143.79	143.99	0.024414	0.027315	2.2109E-05	NaN	0	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2384600			61870	13235	45146	45501							-0.06481045581836042
WGRARLRHRRQ	11	Unmodified	_WGRARLRHRRQ_					0	0	0			REV__ENST00000496200.5_1_7:128043769-128045952:-|nuORF	REV__ENST00000496200.5_1_7:128043769-128045952:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	746.833740234375	2	746.435058	1490.85556	-0.87745	-0.00065496	-0.38843	-0.00028994	-1.2659	-0.0009449	746.4346264338812	149.04	1.9772	149.04	147.8	149.77	0					134	48	4	0	0	0	0.73902	1	56851	56851		0.30703	0.03801	1	706660	+		61871	23785	45147	45502	60247	60247					0.1297700866230116
WGRIARPV	8	Unmodified	_WGRIARPV_					0	0	0			REV__ENST00000262395.9_1_17:27076744-27076957:+|nuORF	REV__ENST00000262395.9_1_17:27076744-27076957:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	478.18487548828125	2	477.785236	953.555919	-0.68754	-0.0003285	-0.12237	-5.8467E-05	-0.80991	-0.00038696	477.7851394403774	39.183	0.56107	39.958	39.708	40.269	0.77451					24	10	3	0	0	0	0.92215	1	14434	14434		5.7604	0	1	15724000	+		61872	23206	45148	45503	60248	60248					0.07728323328024089
WGSFRNELNW	10	Unmodified	_WGSFRNELNW_					0	0	0			REV__ENSG00000171314|ENST00000334828|PGAM1	REV__ENSG00000171314|ENST00000334828|PGAM1	MULTI-MSMS	A375_MHC_IP_R1	1	655.2088623046875	2	654.809636	1307.60472	-0.42126	-0.00027585	-0.89138	-0.00058369	-1.3126	-0.00085953	654.8089232862854	99.014	0.71107	99.014	98.557	99.268	0					28	13	3	0	0	0	0.21466	1	36335	36335		47.749	17.908	1	5378700	+		61873	21059	45149	45504	60249	60249					-0.03677852893520139
WGSFRNELNW	10	Unmodified	_WGSFRNELNW_					0	0	0			REV__ENSG00000171314|ENST00000334828|PGAM1	REV__ENSG00000171314|ENST00000334828|PGAM1	MULTI-SECPEP	A375_MHC_IP_R2	2	655.207763671875	2	654.809636	1307.60472	-0.83738	-0.00054832	-0.1311	-8.5847E-05	-0.96848	-0.00063417	654.8094664297076	98.302	0.60938	99.062	98.742	99.352	0.75977					24	11	3	0	0	0	0.60238	1	37274	37274		39.95	15.929	1	5136400	+		61874	21059	45149	45504	60250	60250					-0.03677852893520139
WGSFRNELNW	10	Unmodified	_WGSFRNELNW_					0	0	0			REV__ENSG00000171314|ENST00000334828|PGAM1	REV__ENSG00000171314|ENST00000334828|PGAM1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	654.809636	1307.60472	-0.42126	-0.00027585	-0.89138	-0.00058369	-1.3126	-0.00085953	654.8089232862854	99.014	0.71107	99.014	98.557	99.268	0	-0.023874	-0.00040096	NaN	47.749	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5378700	+		61875	21059	45149	45504							-0.03677852893520139
WGSGGGGG	8	Unmodified	_WGSGGGGG_					0	0	0		ENSG00000168772|ENST00000394767|CXXC4	REV__ENST00000319170.9_1_2:204359970-204399958:-|nuORF	REV__ENST00000319170.9_1_2:204359970-204399958:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	633.7874145507812	1	634.257965	633.250688	-0.6028	-0.00038233	0.56165	0.00035623	-0.041154	-2.6102E-05	634.25968282459	142.77	0.45528	142.8	142.64	143.09	0.030731					12	8	2	0	0	0	0.972	1	55795	55795		0	0	1	792100			61876	7341	45150	45505	60251	60251					-0.08060692535980252
WGSRIKQSDW	10	Unmodified	_WGSRIKQSDW_					0	0	0		ENST00000378300.9_1_9:35682437-35682695:-|nuORF	ENST00000378300.9_1_9:35682437-35682695:-|nuORF	ENST00000378300.9_1_9:35682437-35682695:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	632.2169799804688	2	631.817461	1261.62037	-0.52522	-0.00033184	0.036744	2.3216E-05	-0.48847	-0.00030862	631.8174561883048	105.58	0.55751	105.58	105.2	105.76	0					17	10	2	0	0	0	0.69833	1	38779	38779		13.042	2.2185	1	3073700			61877	11313	45151	45506	60252	60252					2.4336235355804092E-05
WGSWGGMEPCC	11	Unmodified	_WGSWGGMEPCC_					0	0	0			REV__ENST00000485991.5_1_X:47485455-47487711:-|nuORF	REV__ENST00000485991.5_1_X:47485455-47487711:-|nuORF	MSMS	A375_MHC_IP_R2	2	606.7818603515625	2	606.717187	1211.41982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.02	1	148.04	147.54	148.54	0.018707								0	0	0	0.1636	1	57505	57505		0	0	1		+		61878	18394	45152	45507	60253	60253					-0.17743243351424098
WGWQAPARLW	10	Unmodified	_WGWQAPARLW_					0	0	0			REV__ENST00000421161.1_1_6:159528830-159529112:+|nuORF	REV__ENST00000421161.1_1_6:159528830-159529112:+|nuORF	MSMS	A375_MHC_IP_R2	2	635.7854614257812	2	635.827632	1269.64071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.54	1	101.3	100.8	101.8	0.76278								0	0	0	0.15158	1	38121	38121		14.838	1.7958	1		+		61879	24586	45153	45508	60254	60254					0.016676490739655492
WHCWPQPSPS	10	Unmodified	_WHCWPQPSPS_					0	0	0			REV__ENST00000321599.8_2_3:49762771-49762981:-|nuORF	REV__ENST00000321599.8_2_3:49762771-49762981:-|nuORF	MSMS	A375_MHC_IP_R2	2	612.6982421875	2	612.766383	1223.51821	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.09	1	105.85	105.35	106.35	0.76308								0	0	0	0.14673	1	39752	39752		24.021	6.9077	1		+		61880	23570	45154	45509	60255	60255					-0.08460555719739205
WHEELARPG	9	Unmodified	_WHEELARPG_					0	0	0			REV__ENST00000334512.9_1_10:81072902-81073106:+|nuORF	REV__ENST00000334512.9_1_10:81072902-81073106:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	365.9174499511719	3	365.51744	1093.53049	0.041788	1.5274E-05	0.071798	2.6243E-05	0.11359	4.1518E-05	365.5173954534899	32.891	0.6561	32.891	32.585	33.241	0					36	12	4	0	0	0	0.73363	1	10625	10625		10.8	3.6978	1	10373000	+		61881	23657	45155	45510	60256	60256					-0.01253195985077582
WHFYDDREFIY	11	Unmodified	_WHFYDDREFIY_					0	0	0		ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75	ENSG00000054219|ENST00000263636|LY75	ENSG00000054219|ENST00000263636|LY75	MSMS	A375_MHC_IP_R2	2	795.8529052734375	2	795.854241	1589.69393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.89	1	144.91	144.41	145.41	0.021408								0	0	0	0.16353	1	56581	56581		0.35063	0.35063	1				61882	1256	45156	45511	60257	60257					-0.07733062724696538
WHIHFYLKTLQ	11	Unmodified	_WHIHFYLKTLQ_					0	0	0		ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	A375_MHC_IP_R1	1	496.3586120605469	3	495.938228	1484.79285	-0.64413	-0.00031945	0.54601	0.00027079	-0.098126	-4.8665E-05	495.9384191660256	133.5	0.55925	133.5	133.25	133.81	0					27	10	3	0	0	0	1.0014	1	51558	51558		0.50596	0.50596	1	9927900			61883	1838	45157	45512	60258	60258					0.0698500503087871
WHILLIILA	9	Unmodified	_WHILLIILA_					0	0	0			REV__OR2T12|p.M43I|1|0.34|ENSG00000177201|chr1:248295450-248295450|C/T|missense_variant	REV__OR2T12|p.M43I|1|0.34|ENSG00000177201|chr1:248295450-248295450|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	546.4087524414062	2	546.35242	1090.69029	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.34	1	148.36	147.86	148.86	0.018707								0	0	0	0.15486	1	57617	57617		0	0	1		+		61884	27664	45158	45513	60259	60259					0.1485696403010479
WHKIKIMRSK	10	Unmodified	_WHKIKIMRSK_					0	0	0		ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	MULTI-MSMS	A375_MHC_IP_R2	2	443.33209228515625	3	442.93242	1325.77543	-0.36484	-0.0001616	0.72694	0.00032198	0.3621	0.00016039	442.9326050073156	130.62	1.3177	130.83	130	131.31	0.2142					79	25	4	0	0	0	0.72607	1	51386	51386		0.62683	0.62683	1	55009000			61885	9059	45159	45514	60260	60260					0.12557386224239053
WHKIRARKRC	10	Unmodified	_WHKIRARKRC_					0	0	0		ENST00000373279.5_1_10:71392915-71393320:+|nuORF	ENST00000373279.5_1_10:71392915-71393320:+|nuORF	ENST00000373279.5_1_10:71392915-71393320:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	452.1875915527344	3	451.931413	1352.77241	-0.074147	-3.3509E-05	-0.76624	-0.00034629	-0.84039	-0.0003798	452.2644201242091	143.09	0.60759	143.12	142.84	143.45	0.030731					14	11	2	0	0	0	0.95024	1	55994	55994		0.69767	0	1	589530			61886	11227	45160	45515	60261	60261					0.11013555890099269
WHKKKKLTKSM	11	Unmodified	_WHKKKKLTKSM_					0	0	0			REV__nc|ENSG00000081026|Q5TCQ9-3|MAGI3	REV__nc|ENSG00000081026|Q5TCQ9-3|MAGI3	MULTI-MSMS	A375_MHC_IP_R1	1	708.3211059570312	2	707.921206	1413.82786	-0.95102	-0.00067325	1.2369	0.0008756	0.28584	0.00020235	707.921776589885	148.78	0.94514	148.78	148.31	149.26	0					35	18	2	0	0	0	0.73925	1	56877	56877		0.30703	0.03801	1	161010	+		61887	16765	45161	45516	60262	60262					0.13749924567173366
WHRSGGGQ	8	Unmodified	_WHRSGGGQ_					0	0	0			REV__ENST00000396593.6_2_16:8948948-8949014:-|nuORF	REV__ENST00000396593.6_2_16:8948948-8949014:-|nuORF	MSMS	A375_MHC_IP_R2	2	442.791015625	2	442.709725	883.404898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.366	1	18.97	18.47	19.47	0.60308								0	0	0	0.16876	1	5459	5459		0	0	1		+		61888	24340	45162	45517	60263	60263					-0.04146863050607408
WHTCFCIE	8	Unmodified	_WHTCFCIE_					0	0	0			REV__ENST00000390243.2_2_2:89184913-89185054:+|nuORF	REV__ENST00000390243.2_2_2:89184913-89185054:+|nuORF	MSMS	A375_MHC_IP_R1	1	519.6597900390625	2	519.71223	1037.40991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.808	1	35.808	35.308	36.308	0								0	0	0	0.16876	1	11938	11938		9.3474	1.4373	1		+		61889	24259	45163	45518	60264	60264					-0.10730063294545289
WHWHWRRRRRR	11	Unmodified	_WHWHWRRRRRR_					0	0	0			REV__ENST00000321582.9_1_9:124855435-124855555:-|nuORF	REV__ENST00000321582.9_1_9:124855435-124855555:-|nuORF	MSMS	A375_MHC_IP_R2	2	894.6963500976562	2	894.493773	1786.97299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.541	1	79.286	78.786	79.786	0.74474								0	0	0	0.1636	1	29825	29825		0	0	1		+		61890	23569	45164	45519	60265	60265					0.1109858632171381
WHWRRRRRREA	11	Unmodified	_WHWRRRRRREA_					0	0	0			REV__ENST00000321582.9_1_9:124855435-124855555:-|nuORF	REV__ENST00000321582.9_1_9:124855435-124855555:-|nuORF	MSMS	A375_MHC_IP_R2	2	832.9614868164062	2	832.964514	1663.91448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.36	1	144.39	143.89	144.89	0.024414								0	0	0	0.1636	1	56393	56393		0	0	1		+		61891	23569	45165	45520	60266	60266					0.10907484956601365
WHYYRFRPRWN	11	Unmodified	_WHYYRFRPRWN_					0	0	0			REV__nc|ENSG00000124140|Q9H2X9|SLC12A5;REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6	REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MSMS	A375_MHC_IP_R1	1	560.9688110351562	3	560.948009	1679.8222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.25	1	92.25	91.75	92.75	0								0	0	0	0.1636	1	33900	33900		0	0	1		+		61892	18273;19196	45166	45521	60267	60267					0.009479620997353777
WIDDTSAFV	9	Unmodified	_WIDDTSAFV_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;nc|ENSG00000140694|O95453-3|PARN;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-4|PARN;PARN|p.S484Y|1|0.19|ENSG00000140694|chr16:14552050-14552050|G/T|missense_variant	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	A375_MHC_IP_R1	1	1053.204345703125	1	1053.48875	1052.48148	0.49778	0.00052441	-0.22299	-0.00023492	0.27479	0.00028949	1053.4885657374352	112.65	0.9124	112.65	112.28	113.19	0					27	17	3	0	0	0	0.018481	2	41195	41195;41460		85.357	31.781	1	11309000			61893	5179	45167	45522	60268;60269	60268					-0.042665290646709764
WIDDTSAFV	9	Unmodified	_WIDDTSAFV_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;nc|ENSG00000140694|O95453-3|PARN;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-4|PARN;PARN|p.S484Y|1|0.19|ENSG00000140694|chr16:14552050-14552050|G/T|missense_variant	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	A375_MHC_IP_R2	2	1053.888427734375	1	1053.48875	1052.48148	0.25703	0.00027078	-0.48087	-0.00050659	-0.22384	-0.00023581	1053.4885693252584	111.94	0.86771	112.66	112.25	113.12	0.72458					24	16	2	0	0	0	0.098973	1	42126	42126		50.855	23.971	1	12433000			61894	5179	45167	45522	60270	60270					-0.042665290646709764
WIDLYQILFFV	11	Unmodified	_WIDLYQILFFV_					0	0	0			REV__BTLA|p.P21Q|1|0.23|ENSG00000186265|chr3:112499297-112499297|G/T|missense_variant	REV__BTLA|p.P21Q|1|0.23|ENSG00000186265|chr3:112499297-112499297|G/T|missense_variant	MSMS	A375_MHC_IP_R1	1	728.8099975585938	2	728.897389	1455.78022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.39	1	134.39	133.89	134.89	0								0	0	0	0.16249	1	51825	51825		5.7319	0.43497	1		+		61895	15537	45168	45523	60271	60271					0.07056548847958766
WIEDQYFEYMK	11	Unmodified	_WIEDQYFEYMK_					0	0	0			REV__tr|U7SRF4|U7SRF4_FUSNUGlycosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01644PE=4SV=1	REV__tr|U7SRF4|U7SRF4_FUSNUGlycosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01644PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	776.7448120117188	2	776.34486	1550.67517	-0.46551	-0.0003614	0.89832	0.0006974	0.4328	0.00033601	776.3456323688268	57.678	0.45761	57.678	57.415	57.873	0					17	8	3	0	0	0	0.73284	1	20715	20715		6.1918	0.89496	1	2389200	+		61896	28397	45169	45524	60272	60272					-0.07814360410748122
WIEQDRRDTFR	11	Unmodified	_WIEQDRRDTFR_					0	0	0			REV__ENST00000330676.7_1_17:1608447-1608651:-|nuORF	REV__ENST00000330676.7_1_17:1608447-1608651:-|nuORF	MSMS	A375_MHC_IP_R2	2	761.4423217773438	2	761.381488	1520.74842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.17	1	110.9	110.4	111.4	0.73692								0	0	0	0.16307	1	41562	41562		2.7352	0	1		+		61897	23622	45170	45525	60273	60273					0.008879491467268963
WIFRPLYLFFF	11	Unmodified	_WIFRPLYLFFF_					0	0	0		ENST00000508170.5_1_4:55131036-55131279:+|nuORF	ENST00000508170.5_1_4:55131036-55131279:+|nuORF	ENST00000508170.5_1_4:55131036-55131279:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	775.3214721679688	2	774.923741	1547.83293	-0.94027	-0.00072863	-1.0787	-0.00083592	-2.019	-0.0015646	774.9228844327175	76.432	0.50821	77.173	76.893	77.401	0.74052					27	9	4	0	0	0	0.73795	1	28993	28993		1.3295	0.13619	1	8185700			61898	12871	45171	45526	60274	60274					0.08092551701406592
WIFSIAWI	8	Unmodified	_WIFSIAWI_					0	0	0		ENSG00000198876|ENST00000361264|DCAF12	ENSG00000198876|ENST00000361264|DCAF12	ENSG00000198876|ENST00000361264|DCAF12	MULTI-MSMS	A375_MHC_IP_R1	1	518.7000122070312	2	518.286746	1034.55894	-0.69089	-0.00035808	-0.68025	-0.00035257	-1.3711	-0.00071064	518.2864677826999	66.077	0.66066	66.077	65.717	66.377	0					24	12	3	0	0	0	0.75322	1	23962	23962		19.439	0	1	3041900			61899	9357	45172	45527	60275	60275					0.04304153662178578
WIFVHRRWFYW	11	Unmodified	_WIFVHRRWFYW_					0	0	0			REV__ENST00000441875.1_1_17:16330801-16331912:+|nuORF	REV__ENST00000441875.1_1_17:16330801-16331912:+|nuORF	MSMS	A375_MHC_IP_R1	1	848.2293090820312	2	848.438412	1694.86227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.12	1	126.12	125.62	126.62	0								0	0	0	0.16354	1	48132	48132		0.30703	0.30703	1		+		61900	22039	45173	45528	60276	60276					0.04263508770327462
WIFWKTWIFRK	11	Unmodified	_WIFWKTWIFRK_					0	0	0		nc|ENSG00000288642|P51861|CDR1	nc|ENSG00000288642|P51861|CDR1	nc|ENSG00000288642|P51861|CDR1	MSMS	A375_MHC_IP_R2	2	537.7015380859375	3	537.638001	1609.89217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.953	1	20.563	20.063	21.063	0.61029								0	0	0	0.16351	1	6170	6170		0.45452	0.37117	1				61901	14948	45174	45529	60277	60277					0.11162447715628332
WIHLCRREMWL	11	Unmodified	_WIHLCRREMWL_					0	0	0			REV__ENST00000344111.3_1_7:1007687-1008335:-|nuORF	REV__ENST00000344111.3_1_7:1007687-1008335:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	515.3313598632812	3	514.932203	1541.77478	-0.78805	-0.00040579	-1.0669	-0.00054939	-1.855	-0.00095518	514.932046829672	133.99	0.91116	133.99	133.66	134.57	0					37	15	4	0	0	0	0.73781	1	51699	51699		1.4551	0.24029	1	4980000	+		61902	23756	45175	45530	60278	60278					0.02556223512874567
WIIWRYHNYVW	11	Unmodified	_WIIWRYHNYVW_					0	0	0			REV__ENSG00000139618|ENST00000380152|BRCA2	REV__ENSG00000139618|ENST00000380152|BRCA2	MULTI-SECPEP	A375_MHC_IP_R1	1	818.8151245117188	2	818.414603	1634.81465	-0.61663	-0.00050466	0.44422	0.00036356	-0.17241	-0.0001411	818.4149487335893	131.4	0.2009	131.4	131.28	131.48	0					5	3	2	0	0	0	1.0015	1	50674	50674		1.1933	1.1933	1	4786600	+		61903	19166	45176	45531	60279	60279					0.022638097794470013
WIKLKYLTFSC	11	Unmodified	_WIKLKYLTFSC_					0	0	0		ENST00000578833.2_1_18:75701849-75702093:-|nuORF	ENST00000578833.2_1_18:75701849-75702093:-|nuORF	ENST00000578833.2_1_18:75701849-75702093:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	467.61480712890625	3	467.92482	1400.75263	-0.97089	-0.0004543	0.085055	3.9799E-05	-0.88583	-0.0004145	467.92478071652255	22.189	0.30441	22.809	22.592	22.897	0.61932					7	5	2	0	0	0	1.0014	1	7002	7002		0.08335	0	1	1613300			61904	13659	45177	45532	60280	60280					0.06828322316118829
WIKWLRWWRQW	11	Unmodified	_WIKWLRWWRQW_					0	0	0			REV__VCL|p.I135Lfs*34|1|0.09|ENSG00000035403|chr10:74070985-74070985|T/-|frameshift_variant	REV__VCL|p.I135Lfs*34|1|0.09|ENSG00000035403|chr10:74070985-74070985|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	582.3554077148438	3	581.984283	1742.93102	-0.42463	-0.00024713	1.3644	0.00079405	0.93976	0.00054692	581.9850783414373	85.065	0.20326	85.065	84.955	85.159	0					5	3	2	0	0	0	1.0015	1	31153	31153		0.094841	0	1	2934100	+		61905	28981	45178	45533	60281	60281					0.0892717307001476
WILSDVAT	8	Unmodified	_WILSDVAT_					0	0	0			REV__ENSG00000162543|ENST00000375099|UBXN10	REV__ENSG00000162543|ENST00000375099|UBXN10	MSMS	A375_MHC_IP_R2	2	452.56793212890625	2	452.742368	903.470183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.856	1	84.596	84.096	85.096	0.73962								0	0	0	0.16876	1	31875	31875		23.148	0	1		+		61906	20266	45179	45534	60282	60282					0.014586936318437438
WIMQKHSL	8	Unmodified	_WIMQKHSL_					0	0	0			REV__ENST00000565280.5_1_15:31198658-31229456:+|nuORF	REV__ENST00000565280.5_1_15:31198658-31229456:+|nuORF	MSMS	A375_MHC_IP_R2	2	521.706298828125	2	521.778762	1041.54297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.155	1	63.898	63.398	64.398	0.74263								0	0	0	0.16876	1	23943	23943		11.64	0	1		+		61907	22396	45180	45535	60283	60283					0.023861241536224043
WIPCSCLSY	9	Unmodified	_WIPCSCLSY_					0	0	0			REV__nc|ENSG00000007202|Q14667-4|BLTP2	REV__nc|ENSG00000007202|Q14667-4|BLTP2	MSMS	A375_MHC_IP_R1	1	536.2161254882812	2	536.235538	1070.45652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.459	1	98.459	97.959	98.959	0								0	0	0	0.15486	1	36175	36175		9.3474	1.4373	1		+		61908	26318	45181	45536	60284	60284					-0.07588623463243493
WIPFREHC	8	Unmodified	_WIPFREHC_					0	0	0		ENSG00000011028|ENST00000303375|MRC2	ENSG00000011028|ENST00000303375|MRC2	ENSG00000011028|ENST00000303375|MRC2	MULTI-SECPEP	A375_MHC_IP_R1	1	545.0443725585938	2	544.260736	1086.50692	-0.86118	-0.00046871	1.3576	0.00073888	0.49641	0.00027018	544.7632561475464	136.2	0.30698	136.2	136.05	136.36	0					6	5	2	0	0	0	0.972	1	52514	52514		5.2307	2.2354	1	511880			61909	990	45182	45537	60285	60285					-0.03287333023217798
WIQRRPRW	8	Unmodified	_WIQRRPRW_					0	0	0		ENST00000257749.8_2_6:90661229-90661412:-|nuORF	ENST00000257749.8_2_6:90661229-90661412:-|nuORF	ENST00000257749.8_2_6:90661229-90661412:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	599.7403564453125	2	599.341241	1196.66793	-0.3967	-0.00023776	-0.93308	-0.00055923	-1.3298	-0.00079699	599.3406700925437	59.298	0.55822	59.298	58.99	59.548	0					20	10	3	0	0	0	0.972	1	21334	21334		18.135	3.7296	1	2861100			61910	10250	45183	45538	60286	60286					0.0774617740503345
WIQRRPRW	8	Unmodified	_WIQRRPRW_					0	0	0		ENST00000257749.8_2_6:90661229-90661412:-|nuORF	ENST00000257749.8_2_6:90661229-90661412:-|nuORF	ENST00000257749.8_2_6:90661229-90661412:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	599.739990234375	2	599.341241	1196.66793	-0.83528	-0.00050062	-1.3943	-0.00083564	-2.2295	-0.0013363	599.3403546774382	58.36	0.45881	59.109	58.879	59.338	0.74894					14	8	2	0	0	0	0.77515	1	22107	22107		12.532	0.89125	1	4005600			61911	10250	45183	45538	60287	60287					0.0774617740503345
WISEVLPQI	9	Unmodified	_WISEVLPQI_					0	0	0			REV__ENSG00000176903|ENST00000316836|PNMA1	REV__ENSG00000176903|ENST00000316836|PNMA1	MULTI-MSMS	A375_MHC_IP_R1	1	362.4676513671875	3	362.206092	1083.59645	0.31824	0.00011527	-0.43516	-0.00015762	-0.11692	-4.235E-05	362.20583610356385	49.931	0.76556	49.931	49.591	50.357	0					42	14	4	0	0	0	0.7235	1	17773	17773		4.897	4.897	1	15056000	+		61912	21426	45184	45539	60288	60288					0.05799200137153093
WISFWINM	8	Unmodified	_WISFWINM_					0	0	0		ENSG00000145888|ENST00000274576|GLRA1;nc|ENSG00000145888|P23415|GLRA1;GLRA1|p.S266L|1|0.12|ENSG00000145888|chr5:151851505-151851505|G/A|missense_variant;GLRA1|p.D275N|1|0.12|ENSG00000145888|chr5:151851479-151851479|C/T|missense_variant	ENSG00000145888|ENST00000274576|GLRA1	ENSG00000145888|ENST00000274576|GLRA1	MULTI-MSMS	A375_MHC_IP_R2	2	548.708984375	2	548.767863	1095.52117	-0.61557	-0.00033781	-0.050076	-2.748E-05	-0.66565	-0.00036529	548.767991983361	110.82	0.45689	111.55	111.29	111.75	0.73691					15	8	2	0	0	0	0.72008	2	41769	41769;41816		28.487	1.4018	1	1601600			61913	5590	45185	45540	60289;60290	60289					-0.02276680594923164
WISLNKGYT	9	Unmodified	_WISLNKGYT_					0	0	0		tr|U7STY5|U7STY5_FUSNUGrpBfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01030PE=4SV=1	tr|U7STY5|U7STY5_FUSNUGrpBfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01030PE=4SV=1	tr|U7STY5|U7STY5_FUSNUGrpBfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01030PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	540.6473388671875	2	541.287474	1080.5604	-0.72798	-0.00039405	0.42626	0.00023073	-0.30172	-0.00016332	541.287810449792	46.309	0.964	47.074	46.704	47.668	0.76519					38	18	3	0	0	0	0.69507	1	17350	17350		19.257	2.3147	1	4661300			61914	29727	45186	45541	60291	60291					0.023337429602634074
WISRRRRWNLW	11	Unmodified	_WISRRRRWNLW_					0	0	0			REV__ENST00000472726.2_1_14:104124030-104124072:+|nuORF	REV__ENST00000472726.2_1_14:104124030-104124072:+|nuORF	MSMS	A375_MHC_IP_R2	2	543.6624755859375	3	543.639287	1627.89603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.244	1	94.989	94.489	95.489	0.74474								0	0	0	0.1635	1	35818	35818		0.50596	0.41111	1		+		61915	25140	45187	45542	60292	60292					0.1071993026207565
WISWSFRDE	9	Unmodified	_WISWSFRDE_					0	0	0			REV__tr|U7SU15|U7SU15_FUSNUDUF2147domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00979PE=4SV=1	REV__tr|U7SU15|U7SU15_FUSNUDUF2147domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00979PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	613.6846313476562	2	613.285463	1224.55637	-0.83703	-0.00051334	-0.72509	-0.00044469	-1.5621	-0.00095802	613.2849391854763	19.291	0.3545	19.894	19.733	20.088	0.60308					11	6	2	0	0	0	0.75764	1	5975	5975		1.8442	0.19162	1	1364600	+		61916	28524	45188	45543	60293	60293					-0.046923465334202774
WIVMREGTRNW	11	Unmodified	_WIVMREGTRNW_					0	0	0		ENSG00000187187|ENST00000347077|ZNF546	ENSG00000187187|ENST00000347077|ZNF546	ENSG00000187187|ENST00000347077|ZNF546	MULTI-MSMS	A375_MHC_IP_R1	1	483.64727783203125	3	483.246956	1446.71904	-0.4184	-0.00020219	0.60246	0.00029114	0.18406	8.8947E-05	483.2472043377989	46.518	0.65582	46.518	46.245	46.901	0					15	12	2	0	0	0	0.73404	1	16308	16308		5.0475	0.3316	1	18141000			61917	8812	45189	45544	60294	60294					0.013547135969247392
WIVMREGTRNW	11	Unmodified	_WIVMREGTRNW_					0	0	0		ENSG00000187187|ENST00000347077|ZNF546	ENSG00000187187|ENST00000347077|ZNF546	ENSG00000187187|ENST00000347077|ZNF546	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	483.246956	1446.71904	-0.4184	-0.00020219	0.60246	0.00029114	0.18406	8.8947E-05	483.2472043377989	46.518	0.65582	46.518	46.245	46.901	0	0.018978	-9.4803E-05	NaN	5.0475	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18141000			61918	8812	45189	45544							0.013547135969247392
WIYSCLIFLPS	11	Unmodified	_WIYSCLIFLPS_					0	0	0		GPR52|p.F178Lfs*60|1|0.5|ENSG00000203737|chr1:174448640-174448640|T/-|frameshift_variant;ENSG00000203737|ENST00000367685|GPR52	GPR52|p.F178Lfs*60|1|0.5|ENSG00000203737|chr1:174448640-174448640|T/-|frameshift_variant	GPR52|p.F178Lfs*60|1|0.5|ENSG00000203737|chr1:174448640-174448640|T/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	671.3888549804688	2	671.349217	1340.68388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.591	1	73.591	73.091	74.091	0								0	0	0	0.16203	1	26798	26798		8.1555	0.54658	1				61919	9394	45190	45545	60295	60295					0.027166580163793697
WKAASECTNW	10	Unmodified	_WKAASECTNW_					0	0	0		ENST00000309971.8_1_9:131271332-131277910:+|nuORF	ENST00000309971.8_1_9:131271332-131277910:+|nuORF	ENST00000309971.8_1_9:131271332-131277910:+|nuORF	MSMS	A375_MHC_IP_R1	1	598.2562866210938	2	598.263673	1194.51279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.09	1	136.09	135.59	136.59	0								0	0	0	0.15541	1	52432	52432		3.2813	0	1				61920	10616	45191	45546	60296	60296					-0.07668279302242809
WKEAVKKRLFM	11	Unmodified	_WKEAVKKRLFM_					0	0	0		ENST00000355260.7_1_11:3744416-3744503:-|nuORF	ENST00000355260.7_1_11:3744416-3744503:-|nuORF	ENST00000355260.7_1_11:3744416-3744503:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	479.67926025390625	3	479.279597	1434.81696	-0.79428	-0.00038068	0.65429	0.00031359	-0.13999	-6.7092E-05	479.27985140422015	142.29	0.65759	142.29	141.83	142.49	0					27	12	3	0	0	0	0.73891	1	54614	54614		0.40827	0	1	1868400			61921	10950	45192	45547	60297	60297					0.11694522192897239
WKEIETRH	8	Unmodified	_WKEIETRH_					0	0	0		nc|ENSG00000164172|O96033|MOCS2	nc|ENSG00000164172|O96033|MOCS2	nc|ENSG00000164172|O96033|MOCS2	MULTI-SECPEP	A375_MHC_IP_R1	1	366.2855224609375	3	366.861207	1097.56179	0.033097	1.2142E-05	1.5153	0.0005559	1.5484	0.00056804	366.86168450205787	27.982	0.35142	27.982	27.836	28.188	0					10	6	2	0	0	0	0.972	1	8606	8606		1.6526	1.3836	1	1620000			61922	14725	45193	45548	60298	60298					0.016913770490418756
WKGPDQNIL	9	Unmodified	_WKGPDQNIL_					0	0	0		nc|ENSG00000160145|O60229|KALRN;nc|ENSG00000160145|O60229-6|KALRN;nc|ENSG00000160145|O60229-4|KALRN;ENSG00000160145|ENST00000682506|KALRN	nc|ENSG00000160145|O60229|KALRN	nc|ENSG00000160145|O60229|KALRN	MSMS	A375_MHC_IP_R2	2	535.6854248046875	2	535.785099	1069.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.64	1	36.403	35.903	36.903	0.76338								0	0	0	0.15486	1	12935	12935		8.1555	2.4237	1				61923	14707	45194	45549	60299	60299					0.023648588175319674
WKGYLVRSL	9	Unmodified	_WKGYLVRSL_					0	0	0		nc|ENSG00000166578|Q96DY2-2|IQCD;ENSG00000166578|ENST00000416617|IQCD	nc|ENSG00000166578|Q96DY2-2|IQCD	nc|ENSG00000166578|Q96DY2-2|IQCD	MSMS	A375_MHC_IP_R2	2	374.6098937988281	3	374.553715	1120.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.614	1	44.385	43.885	44.885	0.7705								0	0	0	0.15486	1	16254	16254		6.1918	0	1				61924	7092	45195	45550	60300	60300					0.08382014985249953
WKHIKHKY	8	Unmodified	_WKHIKHKY_					0	0	0		ENST00000401406.3_1_22:30163572-30165705:+|nuORF;ENSG00000184076|ENST00000330029|UQCR10	ENST00000401406.3_1_22:30163572-30165705:+|nuORF	ENST00000401406.3_1_22:30163572-30165705:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	380.9405212402344	3	380.553937	1138.63998	-0.13605	-5.1775E-05	-0.82726	-0.00031482	-0.96331	-0.00036659	380.88801991093186	44.784	0.45926	45.553	45.239	45.698	0.7691					16	8	3	0	0	0	0.77562	2	16723	16723;16731		10.824	5.9269	1	1313000			61925	8549	45196	45551	60301;60302	60301					0.07620854424953905
WKKEPRTRL	9	Unmodified	_WKKEPRTRL_					0	0	0		ENST00000455810.5_1_10:6624113-6625881:+|nuORF	ENST00000455810.5_1_10:6624113-6625881:+|nuORF	ENST00000455810.5_1_10:6624113-6625881:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	607.7655639648438	2	607.361839	1212.70913	-0.21746	-0.00013208	-1.0015	-0.00060827	-1.219	-0.00074035	607.3612165750039	145.15	0.58588	145.18	144.84	145.43	0.021408					55	26	3	0	0	0	0.75764	1	56769	56769		1.8442	0	1	682410			61926	12120	45197	45552	60303	60303					0.11127893653838328
WKKIFHAN	8	Unmodified	_WKKIFHAN_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|47|2|sense	L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|47|2|sense	L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|47|2|sense	MSMS	A375_MHC_IP_R1	1	522.2213134765625	2	522.292894	1042.57123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.232	1	59.232	58.732	59.732	0								0	0	0	0.16876	1	21300	21300		9.3474	0.60203	1				61927	14277	45198	45553	60304	60304					0.05165190125217123
WKKIHQELQRR	11	Unmodified	_WKKIHQELQRR_					0	0	0			REV__ENSG00000185775|ENST00000332857|SPATA31A6	REV__ENSG00000185775|ENST00000332857|SPATA31A6	MSMS	A375_MHC_IP_R1	1	761.3629760742188	2	761.441683	1520.86881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.46	1	133.46	132.96	133.96	0								0	0	0	0.16339	1	51467	51467		1.0715	0.72083	1		+		61928	21918	45199	45554	60305	60305					0.129214019309984
WKKKCVQKP	9	Unmodified	_WKKKCVQKP_					0	0	0			REV__ENST00000460472.6_3_2:179604374-179604491:-|nuORF	REV__ENST00000460472.6_3_2:179604374-179604491:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	382.23553466796875	3	382.226833	1143.65867	-0.16585	-6.3391E-05	-0.3596	-0.00013745	-0.52545	-0.00020084	382.22689438570023	32.648	1.1706	33.385	33.061	34.232	0.73692					34	21	3	0	0	0	0.7235	1	11590	11590		4.897	1.8247	1	4554400	+		61929	24962	45200	45555	60306	60306					0.0925864800447016
WKKKYRHRRPV	11	Unmodified	_WKKKYRHRRPV_					0	0	0			REV__ENST00000472157.1_1_1:46806507-46807258:+|nuORF	REV__ENST00000472157.1_1_1:46806507-46807258:+|nuORF	MSMS	A375_MHC_IP_R1	1	777.6174926757812	2	777.468035	1552.92152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.06	1	141.06	140.56	141.56	0								0	0	0	0.1636	1	54157	54157		0	0	1		+		61930	18011	45201	45556	60307	60307					0.16717404784458267
WKKLFPRWRWQ	11	Unmodified	_WKKLFPRWRWQ_					0	0	0			REV__ENST00000341285.7_2_4:15656858-15657005:-|nuORF	REV__ENST00000341285.7_2_4:15656858-15657005:-|nuORF	MSMS	A375_MHC_IP_R2	2	815.8621215820312	2	815.959512	1629.90447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.11	1	140.17	139.67	140.67	0.059906								0	0	0	0.16354	1	54863	54863		0.30703	0.30703	1		+		61931	23731	45202	45557	60308	60308					0.11471484178673563
WKKQYQRRTHF	11	Unmodified	_WKKQYQRRTHF_					0	0	0			REV__ENST00000421964.1_1_2:208733645-208734633:-|nuORF	REV__ENST00000421964.1_1_2:208733645-208734633:-|nuORF	MSMS	A375_MHC_IP_R1	1	526.6651611328125	3	526.619781	1576.83751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.464	1	88.464	87.964	88.964	0								0	0	0	0.16331	1	32477	32477		0.50596	0	1		+		61932	24597	45203	45558	60309	60309					0.07216828896889638
WKLDQICDKEW	11	Unmodified	_WKLDQICDKEW_					0	0	0		ENST00000511524.1_1_3:139654198-140275504:+|nuORF;ENSG00000158258|ENST00000458420|CLSTN2	ENST00000511524.1_1_3:139654198-140275504:+|nuORF	ENST00000511524.1_1_3:139654198-140275504:+|nuORF	MSMS	A375_MHC_IP_R1	1	488.4694519042969	3	488.571105	1462.69149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.61	1	55.61	55.11	56.11	0								0	0	0	0.16336	1	19895	19895		1.2148	0	1				61933	6296	45204	45559	60310	60310					-0.02135234453976409
WKLEQSMR	8	Unmodified	_WKLEQSMR_					0	0	0		ENSG00000153684|ENST00000526619|GOLGA8F;ENSG00000183629|ENST00000525590|GOLGA8G;nc|ENSG00000290359|Q0D2H9|GOLGA8DP;ENSG00000261739|ENST00000562295|GOLGA8S;nc|ENSG00000261480|H3BSY2-2|GOLGA8M;ENSG00000249931|ENST00000512626|GOLGA8K;ENSG00000261247|ENST00000569052|GOLGA8T;nc|ENSG00000291004|A6NC78|GOLGA8IP;ENSG00000261794|ENST00000566740|GOLGA8H;ENSG00000188626|ENST00000563027|GOLGA8M;ENSG00000179938|ENST00000567927|GOLGA8J;nc|ENSG00000181984|A6NN73|GOLGA8CP	ENSG00000153684|ENST00000526619|GOLGA8F;nc|ENSG00000181984|A6NN73|GOLGA8CP	nc|ENSG00000181984|A6NN73|GOLGA8CP	MULTI-MSMS	A375_MHC_IP_R2	2	539.1732177734375	2	539.279126	1076.5437	-1.1101	-0.00059867	-3.2549	-0.0017553	-4.365	-0.0023539	539.7791251223639	41.145	0.81098	41.92	41.438	42.249	0.77451					38	15	4	0	0	0	0.71318	1	15301	15301		30.637	9.0996	1	13364000			61934	6039;14799	45205	45560	60311	60311					0.008489188026715055
WKLFFRKK	8	Unmodified	_WKLFFRKK_					0	0	0		ENST00000466390.5_1_1:35545015-35561430:+|nuORF	ENST00000466390.5_1_1:35545015-35561430:+|nuORF	ENST00000466390.5_1_1:35545015-35561430:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	577.2579345703125	2	576.855661	1151.69677	-0.52842	-0.00030482	-0.0059397	-3.4263E-06	-0.53436	-0.00030825	577.3559562321088	146.49	0.32854	146.49	146.25	146.58	0					40	32	2	0	0	0	0.972	1	56020	56020		0	0	1	176900			61935	12260	45206	45561	60312	60312					0.1269890198145731
WKLHLTERA	9	Unmodified	_WKLHLTERA_					0	0	0		ENSG00000129968|ENST00000292577|ABHD17A;nc|ENSG00000129968|Q96GS6-2|ABHD17A;nc|ENSG00000129968|Q96GS6-4|ABHD17A;ENST00000588598.5_1_19:1879918-1881565:-|nuORF;nc|ENSG00000129968|Q96GS6-3|ABHD17A	ENSG00000129968|ENST00000292577|ABHD17A	ENSG00000129968|ENST00000292577|ABHD17A	MULTI-MSMS	A375_MHC_IP_R2	2	385.57330322265625	3	385.220735	1152.64038	-0.23653	-9.1115E-05	-0.85546	-0.00032954	-1.092	-0.00042065	385.22050162039665	44.92	0.35709	45.689	45.594	45.951	0.76909					9	6	2	0	0	0	0.75032	1	16788	16788		2.4985	0.41248	1	1023000			61936	4217	45207	45562	60313	60313					0.07016229354144343
WKLLEERK	8	Unmodified	_WKLLEERK_					0	0	0		tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	367.6326599121094	3	367.885353	1100.63423	0.043951	1.6169E-05	0.2381	8.7593E-05	0.28205	0.00010376	367.8853976681419	26.897	1.2101	26.897	26.677	27.887	0					45	23	3	0	0	0	0.972	1	8426	8426		16.149	16.149	1	22502000			61937	30023	45208	45563	60314	60314					0.08793711122598324
WKLPHRRYIPW	11	Unmodified	_WKLPHRRYIPW_					0	0	0			REV__ENSG00000114902|ENST00000619898|SPCS1	REV__ENSG00000114902|ENST00000619898|SPCS1	MULTI-MSMS	A375_MHC_IP_R1	1	518.3612060546875	3	517.961367	1550.86227	-0.8002	-0.00041447	0.61733	0.00031975	-0.18287	-9.4721E-05	517.9614488534556	134.44	1.4201	134.44	133.97	135.39	0					91	27	5	0	0	0	0.73934	1	52144	52144		0	0	1	26561000	+		61938	17846	45209	45564	60315	60315					0.10887508770315435
WKLPHRRYIPW	11	Unmodified	_WKLPHRRYIPW_					0	0	0			REV__ENSG00000114902|ENST00000619898|SPCS1	REV__ENSG00000114902|ENST00000619898|SPCS1	MULTI-MSMS	A375_MHC_IP_R2	2	518.3610229492188	3	517.961367	1550.86227	-0.6153	-0.0003187	0.59857	0.00031004	-0.016734	-8.6675E-06	517.9615159398805	134.39	1.4771	134.53	134.13	135.61	0.13901					85	28	4	0	0	0	0.73902	2	52883	52883;53098		0.08335	0.08335	1	27267000	+		61939	17846	45209	45564	60316;60317	60316					0.10887508770315435
WKLYLRRIIKK	11	Unmodified	_WKLYLRRIIKK_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MSMS	A375_MHC_IP_R1	1	759.1126708984375	2	758.995563	1515.97657	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.5	1	114.5	114	115	0								0	0	0	0.1636	1	41991	41991		0	0	1		+		61940	19778	45210	45565	60318	60318					0.2392239853238607
WKMRIKKI	8	Unmodified	_WKMRIKKI_					0	0	0		TMC3|p.E124K|2|0.4|ENSG00000188869|chr15:81362244-81362244|C/T|missense_variant	TMC3|p.E124K|2|0.4|ENSG00000188869|chr15:81362244-81362244|C/T|missense_variant	TMC3|p.E124K|2|0.4|ENSG00000188869|chr15:81362244-81362244|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	368.3004150390625	3	368.23544	1101.68449	0.042377	1.5605E-05	-0.95913	-0.00035319	-0.91676	-0.00033758	368.2351272691724	24.067	0.20259	24.067	23.94	24.143	0					6	3	2	0	0	0	0.7769	1	6753	6753		6.2058	0	1	5537700			61941	29354	45211	45566	60319	60319					0.1377154224678634
WKMRIKKI	8	Unmodified	_WKMRIKKI_					0	0	0		TMC3|p.E124K|2|0.4|ENSG00000188869|chr15:81362244-81362244|C/T|missense_variant	TMC3|p.E124K|2|0.4|ENSG00000188869|chr15:81362244-81362244|C/T|missense_variant	TMC3|p.E124K|2|0.4|ENSG00000188869|chr15:81362244-81362244|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	368.3005676269531	3	368.23544	1101.68449	-0.10701	-3.9404E-05	-0.6082	-0.00022396	-0.71521	-0.00026337	368.2352083714427	23.324	0.30227	23.954	23.777	24.079	0.63014					7	5	2	0	0	0	0.77583	2	7491	7477;7491		10.074	0	1	3430300			61942	29354	45211	45566	60320;60321	60321					0.1377154224678634
WKNIDAYY	8	Unmodified	_WKNIDAYY_					0	0	0			REV__tr|U7SPU8|U7SPU8_FUSNUPolyketidecyclaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01905PE=4SV=1	REV__tr|U7SPU8|U7SPU8_FUSNUPolyketidecyclaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01905PE=4SV=1	MSMS	A375_MHC_IP_R2	2	536.6900024414062	2	536.758549	1071.50255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.682	1	79.426	78.926	79.926	0.74474								0	0	0	0.16876	1	29869	29869		13.508	3.434	1		+		61943	28364	45212	45567	60322	60322					-0.030345189651598048
WKNLTFRRRQT	11	Unmodified	_WKNLTFRRRQT_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1;ABCA1|p.L317Afs*10|1|0.21|ENSG00000165029|chr9:104840384-104840385|-/C|frameshift_variant	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MSMS	A375_MHC_IP_R1	1	753.7086181640625	2	753.426033	1504.83751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.62	1	144.62	144.12	145.12	0								0	0	0	0.1636	1	55455	55455		0	0	1				61944	6906	45213	45568	60323	60323					0.10528828896894993
WKPGPRMLKVK	11	Unmodified	_WKPGPRMLKVK_					0	0	0			REV__ENST00000421346.1_1_20:37166917-37166977:+|nuORF	REV__ENST00000421346.1_1_20:37166917-37166977:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	447.67254638671875	3	447.272554	1338.79583	-0.15905	-7.1137E-05	0.77931	0.00034856	0.62026	0.00027743	447.2728018961277	137.09	2.4393	137.2	136.86	139.3	0.11134					107	47	3	0	0	0	0.73924	1	54002	54002		0.094841	0.094841	1	35363000	+		61945	24590	45214	45569	60324	60324					0.13998556884007485
WKPRGEANPGP	11	Unmodified	_WKPRGEANPGP_					0	0	0		nc|ENSG00000285950|A6NDY2|FAM90A10;nc|ENSG00000285937|A6NJQ4|FAM90A8;nc|ENSG00000223885|P0C7W8|FAM90A13;nc|ENSG00000215354|P0C7X0|FAM90A24	nc|ENSG00000285950|A6NDY2|FAM90A10	nc|ENSG00000285950|A6NDY2|FAM90A10	MULTI-SECPEP	A375_MHC_IP_R2	2	605.1744384765625	2	604.812179	1207.60981	-0.73631	-0.00044533	-1.2042	-0.00072831	-1.9405	-0.0011736	604.8114310650305	23.444	0.252	24.074	23.928	24.18	0.63014					9	4	3	0	0	0	0.99424	1	7496	7496		8.1555	8.1555	1	3396300			61946	14902	45215	45570	60325	60325					0.014304509690873601
WKQQARPFLLD	11	Unmodified	_WKQQARPFLLD_					0	0	0			REV__ENST00000505677.1_1_5:98106807-98109161:-|nuORF	REV__ENST00000505677.1_1_5:98106807-98109161:-|nuORF	MSMS	A375_MHC_IP_R1	1	467.97100830078125	3	467.9261	1400.75647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.842	1	35.842	35.342	36.342	0								0	0	0	0.16191	1	11951	11951		4.4062	0.81909	1		+		61947	25537	45216	45571	60326	60326					0.07212128134165141
WKRAIKWLG	9	Unmodified	_WKRAIKWLG_					0	0	0			REV__nc|ENSG00000214595|Q6ZMW3-2|EML6	REV__nc|ENSG00000214595|Q6ZMW3-2|EML6	MSMS	A375_MHC_IP_R2	2	579.2737426757812	2	579.350743	1156.68693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.46	1	149.48	148.98	149.98	0.01825								0	0	0	0.15486	1	58008	58008		0.6015	0	1		+		61948	27492	45217	45572	60327	60327					0.11485713976071565
WKRIFWRQILL	11	Unmodified	_WKRIFWRQILL_					0	0	0		ENSG00000184389|ENST00000442999|A3GALT2	ENSG00000184389|ENST00000442999|A3GALT2	ENSG00000184389|ENST00000442999|A3GALT2	MULTI-SECPEP	A375_MHC_IP_R1	1	520.2059326171875	3	520.317151	1557.92962	-0.86674	-0.00045098	-1.8367	-0.00095564	-2.7034	-0.0014066	520.6508198813267	142.46	1.417	142.46	141.47	142.89	0					35	27	2	0	0	0	1.0015	1	54784	54784		0	0	1	3710300			61949	8581	45218	45573	60328	60328					0.17297538981279104
WKRRRWLVRDT	11	Unmodified	_WKRRRWLVRDT_					0	0	0			REV__nc|ENSG00000159082|O43426-4|SYNJ1	REV__nc|ENSG00000159082|O43426-4|SYNJ1	MSMS	A375_MHC_IP_R1	1	524.6597900390625	3	524.639176	1570.8957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.18	1	135.18	134.68	135.68	0								0	0	0	0.1635	1	52124	52124		0.50596	0.41111	1		+		61950	20099	45219	45574	60329	60329					0.1330851054217419
WKRRRWLVRDT	11	Unmodified	_WKRRRWLVRDT_					0	0	0			REV__nc|ENSG00000159082|O43426-4|SYNJ1	REV__nc|ENSG00000159082|O43426-4|SYNJ1	MSMS	A375_MHC_IP_R2	2	524.6716918945312	3	524.639176	1570.8957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.29	1	135.43	134.93	135.93	0.13901								0	0	0	0.1635	1	53193	53193		0.50596	0	1		+		61951	20099	45219	45574	60330	60330					0.1330851054217419
WKRRSRHKNLA	11	Unmodified	_WKRRSRHKNLA_					0	0	0			REV__ENSG00000072422|ENST00000337910|RHOBTB1	REV__ENSG00000072422|ENST00000337910|RHOBTB1	MSMS	A375_MHC_IP_R2	2	726.8264770507812	2	726.426368	1450.83818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.7	1	144.72	144.22	145.22	0.023102								0	0	0	0.1636	1	56514	56514		0	0	1		+		61952	16603	45220	45575	60331	60331					0.13079668336649775
WKRWFKFRKRK	11	Unmodified	_WKRWFKFRKRK_					0	0	0		nc|ENSG00000164542|Q8NCT3|MATCAP2	nc|ENSG00000164542|Q8NCT3|MATCAP2	nc|ENSG00000164542|Q8NCT3|MATCAP2	MSMS	A375_MHC_IP_R2	2	833.6094970703125	2	833.501878	1664.9892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.7	1	130.91	130.41	131.41	0.2142								0	0	0	0.1636	1	51400	51400		0	0	1				61953	14730	45221	45576	60332	60332					0.18330854715259193
WKSRRRWFQGW	11	Unmodified	_WKSRRRWFQGW_					0	0	0		ENST00000564578.5_1_16:75665478-75665638:-|nuORF	ENST00000564578.5_1_16:75665478-75665638:-|nuORF	ENST00000564578.5_1_16:75665478-75665638:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	398.2817687988281	4	398.964097	1591.82728	-0.37452	-0.00014942	0.32303	0.00012888	-0.051482	-2.054E-05	398.96447447998963	61.057	0.25092	61.802	61.668	61.919	0.74503					7	4	2	0	0	0	1.0014	1	23099	23099		0.50596	0	1	1031300			61954	13535	45222	45577	60333	60333					0.05504265962349564
WKVCYFDPE	9	Unmodified	_WKVCYFDPE_					0	0	0			REV__nc|ENSG00000143409|Q8N5J2-4|MINDY1	REV__nc|ENSG00000143409|Q8N5J2-4|MINDY1	MSMS	A375_MHC_IP_R1	1	396.1647644042969	3	396.179437	1185.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.942	1	70.942	70.442	71.442	0								0	0	0	0.15486	1	25766	25766		2.4985	1.2837	1		+		61955	19355	45223	45578	60334	60334					-0.06885609528353598
WKWFKHIIRFI	11	Unmodified	_WKWFKHIIRFI_					0	0	0		ENST00000409175.5_1_2:160599702-160602296:+|nuORF	ENST00000409175.5_1_2:160599702-160602296:+|nuORF	ENST00000409175.5_1_2:160599702-160602296:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	526.0440673828125	3	525.309996	1572.90816	-0.29919	-0.00015717	-0.52118	-0.00027378	-0.82037	-0.00043095	525.6440023432989	140.84	0.66763	140.88	140.6	141.27	0.04216					22	12	2	0	0	0	1.0014	1	55120	55120		0.08335	0.08335	1	845720			61956	11623	45224	45579	60335	60335					0.14462153952536028
WKWLRQKRWLL	11	Unmodified	_WKWLRQKRWLL_					0	0	0			REV__chr12:54283132-54283827|472|74.03|0.0|22.82|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54283132-54283827|472|74.03|0.0|22.82|+|1|HNRNPA1,HNRNPA1|1	MSMS	A375_MHC_IP_R2	2	807.1090087890625	2	806.982987	1611.95142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.08	1	108.83	108.33	109.33	0.75436								0	0	0	0.1636	1	40819	40819		0	0	1		+		61957	15695	45225	45580	60336	60336					0.16992343729839376
WKWLRQKRWLL	11	Unmodified	_WKWLRQKRWLL_					0	0	0			REV__chr12:54283132-54283827|472|74.03|0.0|22.82|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54283132-54283827|472|74.03|0.0|22.82|+|1|HNRNPA1,HNRNPA1|1	MSMS	A375_MHC_IP_R2	2	806.8936767578125	2	806.982987	1611.95142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.16	1	108.91	108.41	109.41	0.75436								0	0	0	0.1636	1	40846	40846		0	0	1		+		61958	15695	45225	45580	60337	60337					0.16992343729839376
WKWQLWPSLCW	11	Unmodified	_WKWQLWPSLCW_					0	0	0			REV__ENST00000490247.1_1_15:39881220-39881283:+|nuORF	REV__ENST00000490247.1_1_15:39881220-39881283:+|nuORF	MSMS	A375_MHC_IP_R1	1	511.6700744628906	3	511.58843	1531.74346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.29	1	46.29	45.79	46.79	0								0	0	0	0.16309	1	16233	16233		2.6312	0.37851	1		+		61959	25383	45226	45581	60338	60338					-0.0011402624954826024
WKYPKGIHV	9	Unmodified	_WKYPKGIHV_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;nc|ENSG00000140694|O95453-3|PARN;ENSG00000140694|ENST00000437198|PARN	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-SECPEP	A375_MHC_IP_R2	2	376.95013427734375	3	376.550193	1126.62875	0.18394	6.9262E-05	-0.023607	-8.8894E-06	0.16033	6.0373E-05	376.55012260450667	39.706	0.40676	40.48	40.269	40.676	0.77451					17	7	3	0	0	0	0.71541	1	14692	14692		7.609	1.8771	1	2963800			61960	5179	45227	45582	60339	60339					0.0705003233078969
WLAAAAAAAA	10	Unmodified	_WLAAAAAAAA_					0	0	0			REV__ENST00000444995.7_1_22:25777521-25801336:-|nuORF	REV__ENST00000444995.7_1_22:25777521-25801336:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	886.8764038085938	1	886.478128	885.470852	-0.58693	-0.0005203	-1.4711	-0.0013041	-2.058	-0.0018244	886.476594699803	144.84	0.19522	144.84	144.72	144.92	0					5	3	2	0	0	0	0.95069	1	55548	55548		0	0	1	328880	+		61961	24837	45228	45583	60340	60340					0.023535330715390046
WLAEKLPTL	9	Unmodified	_WLAEKLPTL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-SECPEP	A375_MHC_IP_R1	1	536.2159423828125	2	535.815867	1069.61718	-0.65176	-0.00034923	0.41799	0.00022397	-0.23377	-0.00012526	535.8159921212302	97.974	1.0701	97.974	97.641	98.711	0					54	20	4	0	0	0	0.11849	1	35944	35944		70.332	26.474	1	18344000			61962	7941	45229	45584	60341	60341					0.08515790516798916
WLAEKLPTL	9	Unmodified	_WLAEKLPTL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-SECPEP	A375_MHC_IP_R2	2	536.2155151367188	2	535.815867	1069.61718	-1.0426	-0.00055864	0.21583	0.00011564	-0.82677	-0.000443	535.8158644347941	97.186	1.0669	97.942	97.569	98.636	0.75587					55	20	4	0	0	0	0.0575	1	36811	36811		76.825	38.851	1	18751000			61963	7941	45229	45584	60342	60342					0.08515790516798916
WLAISFASA	9	Unmodified	_WLAISFASA_					0	0	0		ENSG00000106624|ENST00000223357|AEBP1;nc|ENSG00000106624|Q8IUX7-2|AEBP1	ENSG00000106624|ENST00000223357|AEBP1;nc|ENSG00000106624|Q8IUX7-2|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	MULTI-MSMS	A375_MHC_IP_R1	1	483.6581115722656	2	483.258185	964.501818	-0.24809	-0.00011989	-0.40863	-0.00019747	-0.65671	-0.00031736	483.25789378551013	56.676	2.0322	56.676	56.347	58.379	0					43	39	2	0	0	0	0.17328	1	20324	20324		39.957	7.1716	1	3422600			61964	2703;14529	45230	45585	60343	60343					0.01814686385796449
WLAISFASA	9	Unmodified	_WLAISFASA_					0	0	0		ENSG00000106624|ENST00000223357|AEBP1;nc|ENSG00000106624|Q8IUX7-2|AEBP1	ENSG00000106624|ENST00000223357|AEBP1;nc|ENSG00000106624|Q8IUX7-2|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	MULTI-SECPEP	A375_MHC_IP_R2	2	483.6575012207031	2	483.258185	964.501818	-0.76582	-0.00037009	-0.37027	-0.00017894	-1.1361	-0.00054902	483.25794915535016	55.795	1.7835	56.545	56.186	57.969	0.75015					46	34	2	0	0	0	0.47368	1	21058	21058		26.884	26.884	1	2990500			61965	2703;14529	45230	45585	60344	60344					0.01814686385796449
WLASHLGL	8	Unmodified	_WLASHLGL_					0	0	0		nc|ENSG00000147113|Q9H7Y0-2|DIPK2B;ENSG00000147113|ENST00000398000|DIPK2B	nc|ENSG00000147113|Q9H7Y0-2|DIPK2B	nc|ENSG00000147113|Q9H7Y0-2|DIPK2B	MULTI-SECPEP	A375_MHC_IP_R2	2	448.1743469238281	2	448.75307	895.491587	-0.33603	-0.0001508	0.1099	4.9316E-05	-0.22614	-0.00010148	448.75299786047776	74.274	0.50741	75.012	74.706	75.214	0.73752					14	9	2	0	0	0	0.86765	1	28140	28140		24.674	0	1	1643500			61966	5657	45231	45586	60345	60345					0.03966123451232306
WLCTKQVDGV	10	Unmodified	_WLCTKQVDGV_					0	0	0			REV__ZNF831|p.E797K|1|0.15|ENSG00000124203|chr20:59193408-59193408|G/A|missense_variant	REV__ZNF831|p.E797K|1|0.15|ENSG00000124203|chr20:59193408-59193408|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	383.9190979003906	3	383.53047	1147.56958	0.033913	1.3007E-05	3.3204	0.0012735	3.3543	0.0012865	383.5316615927703	39.686	0.25277	39.686	39.541	39.794	0					6	4	2	0	0	0	0.93194	1	13590	13590		3.0723	2.11	1	1716000	+		61967	29056	45232	45587	60346	60346					0.0016976825427263975
WLDETLAQV	9	Unmodified	_WLDETLAQV_					0	0	0		nc|ENSG00000145332|Q9P2G9-2|KLHL8;ENSG00000145332|ENST00000273963|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	MULTI-SECPEP	A375_MHC_IP_R1	1	538.17626953125	2	537.776939	1073.53933	-0.4894	-0.00026319	-0.3064	-0.00016477	-0.79579	-0.00042796	537.7767157441892	111.49	1.379	111.49	111.1	112.48	0					68	26	4	0	0	0	0.047455	1	40836	40836		88.904	24.667	1	18764000			61968	5552	45233	45588	60347	60347					0.005497328607589225
WLDETLAQV	9	Unmodified	_WLDETLAQV_					0	0	0		nc|ENSG00000145332|Q9P2G9-2|KLHL8;ENSG00000145332|ENST00000273963|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	MULTI-SECPEP	A375_MHC_IP_R2	2	538.1767578125	2	537.776939	1073.53933	-0.69684	-0.00037474	0.18969	0.00010201	-0.50715	-0.00027273	537.777018870415	110.82	1.2269	111.55	111.09	112.32	0.73691					64	23	4	0	0	0	0.05755	1	41749	41749		81.613	17.377	1	19654000			61969	5552	45233	45588	60348	60348					0.005497328607589225
WLDGKIIAV	9	Unmodified	_WLDGKIIAV_					0	0	0		nc|ENSG00000107669|O95260-2|ATE1;ENSG00000107669|ENST00000224652|ATE1	nc|ENSG00000107669|O95260-2|ATE1	nc|ENSG00000107669|O95260-2|ATE1	MULTI-SECPEP	A375_MHC_IP_R1	1	508.2027282714844	2	507.80276	1013.59097	-0.3218	-0.00016341	-0.1304	-6.6219E-05	-0.45221	-0.00022963	507.8028279035224	97.595	0.55668	97.595	97.288	97.845	0					17	10	2	0	0	0	0.03109	1	35832	35832		103.35	41.996	1	2695800			61970	2748	45234	45589	60349	60349					0.08471521345325073
WLDGKIIAV	9	Unmodified	_WLDGKIIAV_					0	0	0		nc|ENSG00000107669|O95260-2|ATE1;ENSG00000107669|ENST00000224652|ATE1	nc|ENSG00000107669|O95260-2|ATE1	nc|ENSG00000107669|O95260-2|ATE1	MULTI-SECPEP	A375_MHC_IP_R2	2	508.2023620605469	2	507.80276	1013.59097	-0.85277	-0.00043304	0.27943	0.00014189	-0.57334	-0.00029115	507.8027462293088	96.649	0.55453	97.405	97.165	97.72	0.75587					21	10	3	0	0	0	0.03109	1	36691	36691		103.35	41.996	1	3340100			61971	2748	45234	45589	60350	60350					0.08471521345325073
WLDNPKIQL	9	Unmodified	_WLDNPKIQL_					0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A;ENST00000481879.1_1_1:23376923-23381674:+|nuORF	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	MULTI-SECPEP	A375_MHC_IP_R1	1	564.2168579101562	2	563.816399	1125.61824	-0.46889	-0.00026437	1.2231	0.0006896	0.75421	0.00042523	563.8166337878131	89.594	0.96152	89.594	89.323	90.285	0					30	18	3	0	0	0	0.32966	1	32943	32943		62.573	26.446	1	1860300			61972	866	45235	45590	60351	60351					0.060460048857066795
WLDRLGESKY	10	Unmodified	_WLDRLGESKY_					0	0	0		nc|ENSG00000111142|P50579-3|METAP2;ENSG00000111142|ENST00000323666|METAP2;nc|ENSG00000111142|P50579-2|METAP2	nc|ENSG00000111142|P50579-3|METAP2	nc|ENSG00000111142|P50579-3|METAP2	MULTI-MSMS	A375_MHC_IP_R1	1	423.28729248046875	3	422.887422	1265.64044	-0.10818	-4.575E-05	0.1811	7.6587E-05	0.07292	3.0837E-05	422.8874706420235	53.326	0.50696	53.326	53.048	53.555	0					24	9	3	0	0	0	0.34817	1	18971	18971		37.251	17.625	1	7738100			61973	2966	45236	45591	60352	60352					0.018241845634747733
WLDRLGESKY	10	Unmodified	_WLDRLGESKY_					0	0	0		nc|ENSG00000111142|P50579-3|METAP2;ENSG00000111142|ENST00000323666|METAP2;nc|ENSG00000111142|P50579-2|METAP2	nc|ENSG00000111142|P50579-3|METAP2	nc|ENSG00000111142|P50579-3|METAP2	MULTI-SECPEP	A375_MHC_IP_R2	2	423.287353515625	3	422.887422	1265.64044	-0.5866	-0.00024807	0.2758	0.00011663	-0.3108	-0.00013143	422.8874699594844	52.507	0.60708	53.259	52.983	53.59	0.75225					25	11	3	0	0	0	0.8866	1	19800	19800		17.049	14.796	1	8125800			61974	2966	45236	45591	60353	60353					0.018241845634747733
WLEDGVLYSNY	11	Unmodified	_WLEDGVLYSNY_					0	0	0			REV__ENSG00000130669|ENST00000360442|PAK4	REV__ENSG00000130669|ENST00000360442|PAK4	MSMS	A375_MHC_IP_R2	2	453.61444091796875	3	453.546954	1357.61903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.959	1	30.658	30.158	31.158	0.69872								0	0	0	0.16249	1	10500	10500		2.6312	0	1		+		61975	18552	45237	45592	60354	60354					-0.0454724525588972
WLEEGIHWQY	10	Unmodified	_WLEEGIHWQY_					0	0	0		ENSG00000158615|ENST00000367188|PPP1R15B	ENSG00000158615|ENST00000367188|PPP1R15B	ENSG00000158615|ENST00000367188|PPP1R15B	MULTI-SECPEP	A375_MHC_IP_R2	2	681.2185668945312	2	680.81967	1359.62479	-0.61348	-0.00041767	-0.18975	-0.00012919	-0.80323	-0.00054685	680.8195460859653	102.12	0.71113	102.88	102.57	103.28	0.76429					27	13	3	0	0	0	0.22519	1	38690	38690		67.838	48.476	1	3417200			61976	6318	45238	45593	60355	60355					-0.040641019535542
WLEENVHEV	9	Unmodified	_WLEENVHEV_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF;ENST00000563484.1_1_16:89971421-89975542:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-SECPEP	A375_MHC_IP_R1	1	578.1777954101562	2	577.77747	1153.54039	-0.12087	-6.9835E-05	0.16541	9.557E-05	0.044541	2.5735E-05	577.777540374432	57.012	0.91568	57.012	56.753	57.669	0					25	17	2	0	0	0	0.046478	1	20429	20429		82.529	44.555	1	9714900			61977	5206	45239	45594	60356	60356					-0.03024052770342678
WLEENVHEV	9	Unmodified	_WLEENVHEV_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF;ENST00000563484.1_1_16:89971421-89975542:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-SECPEP	A375_MHC_IP_R2	2	578.1773071289062	2	577.77747	1153.54039	-0.48301	-0.00027907	0.099378	5.7418E-05	-0.38364	-0.00022166	577.777548024329	56.256	1.0711	57.006	56.438	57.51	0.75014					53	20	4	0	0	0	0.11711	1	21254	21254		60.074	29.437	1	12299000			61978	5206	45239	45594	60357	60357					-0.03024052770342678
WLEFSIKIKDL	11	Unmodified	_WLEFSIKIKDL_					0	0	0		ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	MSMS	A375_MHC_IP_R2	2	696.7997436523438	2	696.400295	1390.78604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.578	1	81.323	80.823	81.823	0.74474								0	0	0	0.16265	1	30592	30592		4.897	1.6157	1				61979	2642	45240	45595	60358	60358					0.10627647359638104
WLEHETFGTLE	11	Unmodified	_WLEHETFGTLE_					0	0	0			REV__ENST00000525039.5_1_11:118895622-118898521:-|nuORF	REV__ENST00000525039.5_1_11:118895622-118898521:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	681.7213134765625	2	681.322242	1360.62993	-0.58465	-0.00039833	-2.2396	-0.0015259	-2.8243	-0.0019242	681.3210051172789	102.83	0.60925	102.83	102.56	103.17	0					21	11	3	0	0	0	0.90584	1	37775	37775		22.736	6.5872	1	1901600	+		61980	25762	45241	45596	60359	60359					-0.0359584288160022
WLEHNCHYQYM	11	Unmodified	_WLEHNCHYQYM_					0	0	0		nc|ENSG00000186231|Q96NJ5-3|KLHL32;nc|ENSG00000186231|Q96NJ5-2|KLHL32;ENSG00000186231|ENST00000369261|KLHL32	nc|ENSG00000186231|Q96NJ5-3|KLHL32	nc|ENSG00000186231|Q96NJ5-3|KLHL32	MULTI-MSMS	A375_MHC_IP_R2	2	762.2817993164062	2	762.313371	1522.61219	-0.70151	-0.00053477	-3.972	-0.0030279	-4.6736	-0.0035627	762.3104470654895	114.26	0.35377	114.97	114.78	115.14	0.70985					10	6	2	0	0	0	0.7362	1	43041	43041		2.9952	1.6657	1	3538300			61981	8735	45242	45597	60360	60360					-0.12821204679767106
WLETVNDKS	9	Unmodified	_WLETVNDKS_					0	0	0		nc|ENSG00000153214|Q96K49-2|TMEM87B;ENSG00000153214|ENST00000283206|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6976318359375	2	546.272021	1090.52949	-0.48531	-0.00026511	-1.7463	-0.00095397	-2.2316	-0.0012191	546.2720290964683	77.869	0.51029	77.869	77.436	77.946	0					12	9	2	0	0	0	0.58271	1	28262	28262		26.884	2.6737	1	618140			61982	6017	45243	45598	60361	60361					-0.01215455144642874
WLEWRRTFFIS	11	Unmodified	_WLEWRRTFFIS_					0	0	0			REV__ENST00000587971.5_1_18:31684099-31802142:-|nuORF	REV__ENST00000587971.5_1_18:31684099-31802142:-|nuORF	MSMS	A375_MHC_IP_R2	2	770.8887329101562	2	770.906611	1539.79867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.62	1	123.96	123.46	124.46	0.34458								0	0	0	0.16273	1	47581	47581		4.5289	1.2476	1		+		61983	26406	45244	45599	60362	60362					0.05036103542533965
WLEYIENY	8	Unmodified	_WLEYIENY_					0	0	0		ENSG00000064763|ENST00000536681|FAR2;nc|ENSG00000064763|Q96K12-2|FAR2	ENSG00000064763|ENST00000536681|FAR2	ENSG00000064763|ENST00000536681|FAR2	MULTI-MSMS	A375_MHC_IP_R2	2	565.1637573242188	2	565.263665	1128.51278	-0.81471	-0.00046053	-1.9148	-0.0010824	-2.7295	-0.0015429	565.262507272403	57.205	1.8813	57.955	57.203	59.084	0.74987					80	36	4	0	0	0	0.72761	1	21787	21787		26.341	0.94196	1	25365000			61984	1359	45245	45600	60363	60363					-0.04633956030579611
WLFKHRRVRF	10	Unmodified	_WLFKHRRVRF_					0	0	0		ENSG00000065923|ENST00000616978|SLC9A7;nc|ENSG00000065923|Q96T83|SLC9A7	ENSG00000065923|ENST00000616978|SLC9A7	ENSG00000065923|ENST00000616978|SLC9A7	MULTI-MSMS	A375_MHC_IP_R2	2	482.687744140625	3	482.286074	1443.83639	-0.38746	-0.00018687	2.1319	0.0010282	1.7444	0.0008413	482.2875898863695	143.17	0.80891	143.2	142.69	143.5	0.030731					50	15	5	0	0	0	0.72645	2	55893	55893;55913		0.15932	0.064481	1	16486000			61985	1396	45246	45601	60364;60365	60364					0.13222659318648766
WLGDRKKREKR	11	Unmodified	_WLGDRKKREKR_					0	0	0			REV__ENST00000432071.1_1_2:85808896-85809064:+|nuORF	REV__ENST00000432071.1_1_2:85808896-85809064:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	491.6915283203125	3	491.291664	1470.85316	-0.67294	-0.00033061	0.96681	0.00047498	0.29387	0.00014437	491.6264085747658	143.09	0.40237	143.09	142.84	143.24	0					16	7	3	0	0	0	0.73897	1	54902	54902		0.094841	0.011491	1	1325200	+		61986	24709	45247	45602	60366	60366					0.136571154139574
WLGPPVLRRLC	11	Unmodified	_WLGPPVLRRLC_					0	0	0			REV__nc|ENSG00000164362|O14746-4|TERT	REV__nc|ENSG00000164362|O14746-4|TERT	MULTI-MSMS	A375_MHC_IP_R2	2	437.63653564453125	3	437.256904	1308.74888	-0.30211	-0.0001321	0.71859	0.00031421	0.41648	0.00018211	437.25711945385183	130.62	1.7726	130.83	129.59	131.36	0.2142					112	34	5	0	0	0	0.73779	1	51478	51478		0.50596	0.50596	1	166390000	+		61987	20489	45248	45603	60367	60367					0.10685697332928612
WLGPPVLRRLC	11	Unmodified	_WLGPPVLRRLC_					0	0	0			REV__nc|ENSG00000164362|O14746-4|TERT	REV__nc|ENSG00000164362|O14746-4|TERT	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	437.256904	1308.74888	-0.36538	-0.00015977	0.69441	0.00030364	0.32903	0.00014387	437.2571067302986	130.79	1.5239	130.79	129.7	131.23	0	-0.017979	-1.6568E-05	NaN	0.50596	88	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158220000	+		61988	20489	45248	45603							0.10685697332928612
WLGVLLLW	8	Unmodified	_WLGVLLLW_					0	0	0			REV__ENST00000411741.1_3_3:195603375-195603606:-|nuORF	REV__ENST00000411741.1_3_3:195603375-195603606:-|nuORF	MSMS	A375_MHC_IP_R1	1	500.4751892089844	2	500.304939	998.595324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.886	1	68.886	68.386	69.386	0								0	0	0	0.16876	1	24988	24988		6.3541	0	1		+		61989	24482	45249	45604	60368	60368					0.09597030558904862
WLHFIKHLPFV	11	Unmodified	_WLHFIKHLPFV_					0	0	0			REV__ENST00000510927.5_1_4:106967729-107168455:-|nuORF	REV__ENST00000510927.5_1_4:106967729-107168455:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	719.3119506835938	2	718.913707	1435.81286	-0.73817	-0.00053068	-1.39	-0.00099932	-2.1282	-0.00153	718.912715717696	131.92	1.0158	132.11	131.59	132.61	0.18953					50	19	3	0	0	0	0.73779	1	51786	51786		1.4819	0.28856	1	7607800	+		61990	19471	45250	45605	60369	60369					0.11238800761475432
WLHLWSRSS	9	Unmodified	_WLHLWSRSS_					0	0	0			REV__ENST00000481195.5_1_5:133536086-133536140:-|nuORF	REV__ENST00000481195.5_1_5:133536086-133536140:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	586.7034912109375	2	586.30399	1170.59343	-0.57825	-0.00033903	-1.2943	-0.00075885	-1.8725	-0.0010979	586.3028041491249	127.33	1.9786	127.6	127.31	129.29	0.26592					64	38	2	0	0	0	0.69884	2	50188	50188;50473		10.824	2.0785	1	9562800	+		61991	25257	45251	45606	60370;60371	60370					0.0149536980297853
WLHWMPEY	8	Unmodified	_WLHWMPEY_					0	0	0			REV__ENSG00000147119|ENST00000276055|CHST7	REV__ENSG00000147119|ENST00000276055|CHST7	MULTI-MSMS	A375_MHC_IP_R1	1	581.6788940429688	2	581.262945	1160.51134	-0.049762	-2.8925E-05	-0.39458	-0.00022935	-0.44434	-0.00025828	581.2633351098028	70.338	0.30756	70.338	70.135	70.442	0					8	5	2	0	0	0	0.77603	1	25502	25502		9.3474	0.75416	1	704120	+		61992	19569	45252	45607	60372	60372					-0.062498686003209514
WLHWMPEY	8	Unmodified	_WLHWMPEY_					0	0	0			REV__ENSG00000147119|ENST00000276055|CHST7	REV__ENSG00000147119|ENST00000276055|CHST7	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	581.262945	1160.51134	-0.049762	-2.8925E-05	-0.39458	-0.00022935	-0.44434	-0.00025828	581.2633351098028	70.338	0.30756	70.338	70.135	70.442	0	0	0	NaN	9.3474	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	704120	+		61993	19569	45252	45607							-0.062498686003209514
WLIEDGKVV	9	Unmodified	_WLIEDGKVV_					0	0	0		ENST00000437039.1_1_2:179319678-179320041:+|nuORF;ENSG00000090273|ENST00000321265|NUDC	ENST00000437039.1_1_2:179319678-179320041:+|nuORF;ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	MULTI-SECPEP	A375_MHC_IP_R1	1	530.1978149414062	2	529.797675	1057.5808	-0.61874	-0.00032781	-2.7138	-0.0014377	-3.3325	-0.0017655	530.2968938911007	81.213	1.8245	81.213	80.289	82.113	0					67	35	4	0	0	0	0.24324	1	29720	29720		53.833	10.06	1	7240900			61994	11933;1948	45253	45608	60373	60373					0.054309136201027286
WLIEDGKVV	9	Unmodified	_WLIEDGKVV_					0	0	0		ENST00000437039.1_1_2:179319678-179320041:+|nuORF;ENSG00000090273|ENST00000321265|NUDC	ENST00000437039.1_1_2:179319678-179320041:+|nuORF;ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	MULTI-MSMS	A375_MHC_IP_R2	2	530.197265625	2	529.797675	1057.5808	-0.61921	-0.00032806	-3.0853	-0.0016346	-3.7045	-0.0019626	530.2968973964092	80.299	1.2725	81.044	80.657	81.93	0.74473					49	24	4	0	0	0	0.029064	3	30542	30484;30522;30542		75.761	23.492	1	6462100			61995	11933;1948	45253	45608	60374;60375;60376	60376					0.054309136201027286
WLIEDGKVVTV	11	Unmodified	_WLIEDGKVVTV_					0	0	0		ENST00000437039.1_1_2:179319678-179320041:+|nuORF;ENSG00000090273|ENST00000321265|NUDC	ENST00000437039.1_1_2:179319678-179320041:+|nuORF;ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	MULTI-SECPEP	A375_MHC_IP_R1	1	630.2552490234375	2	629.855721	1257.69689	-0.78183	-0.00049244	-0.21151	-0.00013322	-0.99333	-0.00062566	629.8554943398688	91.174	0.45497	91.174	90.946	91.401	0					17	8	3	0	0	0	0.31903	1	33526	33526		51.488	20.22	1	2608900			61996	11933;1948	45254	45609	60377	60377					0.07834812400142255
WLIEDGKVVTV	11	Unmodified	_WLIEDGKVVTV_					0	0	0		ENST00000437039.1_1_2:179319678-179320041:+|nuORF;ENSG00000090273|ENST00000321265|NUDC	ENST00000437039.1_1_2:179319678-179320041:+|nuORF;ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	MULTI-SECPEP	A375_MHC_IP_R2	2	630.2554321289062	2	629.855721	1257.69689	-0.70953	-0.0004469	0.66528	0.00041903	-0.044252	-2.7873E-05	629.8556826433177	90.471	0.50736	91.205	90.956	91.463	0.73451					14	9	2	0	0	0	0.065145	1	34434	34434		64.927	26.751	1	2585100			61997	11933;1948	45254	45609	60378	60378					0.07834812400142255
WLIGRFAL	8	Unmodified	_WLIGRFAL_					0	0	0			REV__ENST00000316403.14_2_8:27472304-27472370:-|nuORF	REV__ENST00000316403.14_2_8:27472304-27472370:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	488.1905517578125	2	488.292362	974.570172	-0.48323	-0.00023596	0.36104	0.00017629	-0.12219	-5.9666E-05	488.2925781783525	109.64	1.7307	110.38	109.16	110.9	0.74684					42	33	2	0	0	0	0.77702	1	41417	41417		5.7604	5.7604	1	3550200	+		61998	23537	45255	45610	60379	60379					0.0818697575632541
WLILRIRESLE	11	Unmodified	_WLILRIRESLE_					0	0	0			REV__ENST00000554218.1_1_14:58758400-58764821:-|nuORF	REV__ENST00000554218.1_1_14:58758400-58764821:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	477.0161437988281	3	476.617155	1426.82963	-0.34311	-0.00016353	-2.1661	-0.0010324	-2.5092	-0.0011959	476.61643185292075	143.12	0.91451	143.15	142.48	143.39	0.030731					30	17	3	0	0	0	0.73886	1	55974	55974		0.45452	0	1	1278000	+		61999	26075	45256	45611	60380	60380					0.13329256856786742
WLIMFLRQF	9	Unmodified	_WLIMFLRQF_					0	0	0			REV__CLIC4|p.S38F|1|0.35|ENSG00000169504|chr1:24797782-24797782|C/T|missense_variant	REV__CLIC4|p.S38F|1|0.35|ENSG00000169504|chr1:24797782-24797782|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	418.9676208496094	3	418.566967	1252.67907	0.31207	0.00013062	1.6864	0.00070586	1.9984	0.00083648	418.56751476244295	37.275	0.51051	37.275	37.096	37.607	0					11	9	2	0	0	0	0.78351	1	12590	12590		2.7352	0	1	3129600	+		62000	15800	45257	45612	60381	60381					0.06283818664269347
WLIRMQKLLKE	11	Unmodified	_WLIRMQKLLKE_					0	0	0			REV__ENSG00000144015|ENST00000272395|TRIM43	REV__ENSG00000144015|ENST00000272395|TRIM43	MULTI-MSMS	A375_MHC_IP_R1	1	486.68505859375	3	486.626885	1456.85883	-0.5419	-0.0002637	-0.78469	-0.00038185	-1.3266	-0.00064555	486.62715903971895	135.93	0.81848	135.93	135.54	136.36	0					29	15	3	0	0	0	0.73891	1	52438	52438		0.40827	0	1	3755600	+		62001	19402	45258	45613	60382	60382					0.14867077881399382
WLKFFLVSVI	10	Unmodified	_WLKFFLVSVI_					0	0	0			REV__ENST00000361611.10_1_14:23495117-23495210:-|nuORF	REV__ENST00000361611.10_1_14:23495117-23495210:-|nuORF	MSMS	A375_MHC_IP_R1	1	417.71881103515625	3	417.921515	1250.74272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142	1	142	141.5	142.5	0								0	0	0	0.1562	1	54489	54489		0.69767	0	1		+		62002	23918	45259	45614	60383	60383					0.1273750237303375
WLKLIAML	8	Unmodified	_WLKLIAML_					0	0	0		ENST00000375370.9_1_13:114295208-114295328:+|nuORF	ENST00000375370.9_1_13:114295208-114295328:+|nuORF	ENST00000375370.9_1_13:114295208-114295328:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	988.0073852539062	1	987.605971	986.598695	-0.16889	-0.00016679	0.90185	0.00089067	0.73296	0.00072388	987.6067668571125	147.78	0.1848	147.78	147.71	147.9	0					23	13	2	0	0	0	0.77861	1	56456	56456		0	0	1	116620			62003	11270	45260	45615	60384	60384					0.10485957341268204
WLKLIAML	8	Unmodified	_WLKLIAML_					0	0	0		ENST00000375370.9_1_13:114295208-114295328:+|nuORF	ENST00000375370.9_1_13:114295208-114295328:+|nuORF	ENST00000375370.9_1_13:114295208-114295328:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		1	987.605971	986.598695	0.19072	0.00018836	1.0908	0.0010773	1.2815	0.0012656	987.6069177626199	147.79	0.18961	147.81	147.71	147.9	0.018692	0.013523	0.00010418	NaN	0	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111500			62004	11270	45260	45615							0.10485957341268204
WLKNGVKIK	9	Unmodified	_WLKNGVKIK_					0	0	0		TTN|p.E3007K|1|0.42|ENSG00000155657|chr2:178768817-178768817|C/T|missense_variant	TTN|p.E3007K|1|0.42|ENSG00000155657|chr2:178768817-178768817|C/T|missense_variant	TTN|p.E3007K|1|0.42|ENSG00000155657|chr2:178768817-178768817|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	362.96539306640625	3	362.565843	1084.6757	-0.42713	-0.00015486	-0.062636	-2.271E-05	-0.48977	-0.00017757	362.56576865329043	19.662	0.75975	20.273	19.841	20.6	0.61029					25	14	2	0	0	0	0.59266	1	6006	6006		15.248	15.248	1	3080400			62005	30096	45261	45616	60385	60385					0.1367489188194213
WLKQEVPEV	9	Unmodified	_WLKQEVPEV_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4;ENST00000393966.1_1_16:67315041-67322708:+|nuORF;PLEKHG4|p.F606Gfs*30|1|0.19|ENSG00000196155|chr16:67284832-67284857|CCACTTCCGAAAGATGTGGGCTCTGG/-|frameshift_variant	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	564.7077026367188	2	564.308406	1126.60226	-0.51395	-0.00029002	-1.0488	-0.00059185	-1.5628	-0.00088188	564.3086315275507	65.197	0.40612	65.197	65.005	65.411	0					14	7	2	0	0	0	0.22013	1	23642	23642		36.506	5.8697	1	1133700			62006	9008	45262	45617	60386	60386					0.04402298648778924
WLKQEVPEV	9	Unmodified	_WLKQEVPEV_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4;ENST00000393966.1_1_16:67315041-67322708:+|nuORF;PLEKHG4|p.F606Gfs*30|1|0.19|ENSG00000196155|chr16:67284832-67284857|CCACTTCCGAAAGATGTGGGCTCTGG/-|frameshift_variant	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	564.308406	1126.60226	-0.40989	-0.0002313	-2.4954	-0.0014082	-2.9053	-0.0016395	564.8074487642878	64.421	0.4595	65.161	64.85	65.31	0.74023	-0.017809	-0.0010547	NaN	36.506	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1495200			62007	9008	45262	45617							0.04402298648778924
WLLFRWWRRRW	11	Unmodified	_WLLFRWWRRRW_					0	0	0		ENST00000463462.5_1_7:148982563-148988696:+|nuORF;ENST00000426347.5_1_7:148982610-148985528:+|nuORF;ENST00000481817.5_1_7:148984700-148990670:+|nuORF	ENST00000463462.5_1_7:148982563-148988696:+|nuORF	ENST00000463462.5_1_7:148982563-148988696:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	881.391357421875	2	880.991678	1759.9688	-0.5086	-0.00044808	-2.1659	-0.0019081	-2.6745	-0.0023562	880.9906488663906	75.875	0.30479	76.615	76.487	76.792	0.74052					8	5	2	0	0	0	1.0015	1	28840	28840		0	0	1	2064300			62008	11804	45263	45618	60387	60387					0.11921684055459991
WLLLLLLLL	9	Unmodified	_WLLLLLLLL_					0	0	0			REV__ENSG00000083807|ENST00000263093|SLC27A5	REV__ENSG00000083807|ENST00000263093|SLC27A5	MSMS	A375_MHC_IP_R1	1	555.4080810546875	2	555.388471	1108.76239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.75	1	148.75	148.25	149.25	0								0	0	0	0.15486	1	56797	56797		0	0	1		+		62009	16812	45264	45619	60388	60388					0.21235878383822637
WLLRHEWWRWW	11	Unmodified	_WLLRHEWWRWW_					0	0	0			REV__ENST00000564785.5_1_15:75650962-75651301:-|nuORF	REV__ENST00000564785.5_1_15:75650962-75651301:-|nuORF	MSMS	A375_MHC_IP_R2	2	877.341064453125	2	877.446769	1752.87898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.88	1	141.91	141.41	142.41	0.030731								0	0	0	0.1636	1	55477	55477		0	0	1		+		62010	26205	45265	45620	60389	60389					0.0326600965624948
WLLRLLLLLLL	11	Unmodified	_WLLRLLLLLLL_					0	0	0			REV__ENSG00000148488|ENST00000377602|ST8SIA6	REV__ENSG00000148488|ENST00000377602|ST8SIA6	MSMS	A375_MHC_IP_R2	2	689.7656860351562	2	689.981059	1377.94756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.949	1	55.7	55.2	56.2	0.75075								0	0	0	0.1636	1	20748	20748		0	0	1		+		62011	19636	45266	45621	60390	60390					0.2737086118343086
WLLSFLWPKNV	11	Unmodified	_WLLSFLWPKNV_					0	0	0			REV__nc|ENSG00000130055|Q9HCC8-2|GDPD2	REV__nc|ENSG00000130055|Q9HCC8-2|GDPD2	MULTI-MSMS	A375_MHC_IP_R1	1	468.3327941894531	3	468.267574	1401.78089	-0.24481	-0.00011464	-0.84639	-0.00039634	-1.0912	-0.00051097	468.26720642804025	42.208	0.50455	42.208	41.932	42.436	0					13	9	2	0	0	0	0.72909	1	14624	14624		9.7643	3.1408	1	2968700	+		62012	18517	45267	45622	60391	60391					0.0960738828769081
WLLVFIGIL	9	Unmodified	_WLLVFIGIL_					0	0	0			REV__ENSG00000261949|ENST00000610896|GFY	REV__ENSG00000261949|ENST00000610896|GFY	MULTI-SECPEP	A375_MHC_IP_R1	1	538.0685424804688	2	537.341521	1072.66849	-0.87856	-0.00047208	-4.2995	-0.0023103	-5.178	-0.0027824	537.3388124224437	129.5	0.40642	129.5	129.35	129.75	0					13	7	3	0	0	0	0.4045	1	49807	49807		36.466	0	1	9840600	+		62013	22915	45268	45623	60392	60392					0.13506159281519103
WLLVFIGIL	9	Unmodified	_WLLVFIGIL_					0	0	0			REV__ENSG00000261949|ENST00000610896|GFY	REV__ENSG00000261949|ENST00000610896|GFY	MULTI-MATCH	A375_MHC_IP_R2	2		2	537.341521	1072.66849	-0.91868	-0.00049364	-3.9805	-0.0021389	-4.8992	-0.0026325	537.3388819486512	129.25	0.20102	129.49	129.36	129.57	0.23946	-0.0057863	0.00013695	NaN	36.466	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1801800	+		62014	22915	45268	45623							0.13506159281519103
WLLWFWWLEYY	11	Unmodified	_WLLWFWWLEYY_					0	0	0			REV__ENST00000441673.2_1_2:74684653-74687805:+|nuORF	REV__ENST00000441673.2_1_2:74684653-74687805:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	569.7136840820312	3	568.946501	1703.81767	-0.27442	-0.00015613	2.7269	0.0015514	2.4525	0.0013953	568.9488758513774	88.706	0.35474	89.438	89.178	89.533	0.7318					9	6	2	0	0	0	1.0015	1	33734	33734		0.094841	0	1	901820	+		62015	22774	45269	45624	60393	60393					-0.006083598863824591
WLMAVNPALW	10	Unmodified	_WLMAVNPALW_					0	0	0		AluJr_dup55786|chr12:55959098-55959386:+|1.4066961328933956|0.017221199365652|6.35|407.0|1|1|sense	AluJr_dup55786|chr12:55959098-55959386:+|1.4066961328933956|0.017221199365652|6.35|407.0|1|1|sense	AluJr_dup55786|chr12:55959098-55959386:+|1.4066961328933956|0.017221199365652|6.35|407.0|1|1|sense	MULTI-MSMS	A375_MHC_IP_R2	2	401.2794494628906	3	400.879322	1199.61614	-0.02159	-8.6551E-06	0.5467	0.00021916	0.52511	0.0002105	400.8795376615503	41.888	1.477	42.662	41.946	43.423	0.77451					55	28	3	0	0	0	0.70741	1	15586	15586		8.9762	0	1	3601500			62016	111	45270	45625	60394	60394					0.024312528762493457
WLNWRRRRSIW	11	Unmodified	_WLNWRRRRSIW_					0	0	0		ENST00000472726.2_1_14:104124030-104124072:+|nuORF	ENST00000472726.2_1_14:104124030-104124072:+|nuORF	ENST00000472726.2_1_14:104124030-104124072:+|nuORF	MSMS	A375_MHC_IP_R2	2	543.6661987304688	3	543.639287	1627.89603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.473	1	66.212	65.712	66.712	0.73811								0	0	0	0.16338	1	24822	24822		1.1098	0.70149	1				62017	12378	45271	45626	60395	60395					0.10719930262052912
WLQDQIQTV	9	Unmodified	_WLQDQIQTV_					0	0	0		ENSG00000113966|ENST00000463745|ARL6	ENSG00000113966|ENST00000463745|ARL6	ENSG00000113966|ENST00000463745|ARL6	MULTI-SECPEP	A375_MHC_IP_R1	1	566.1950073242188	2	565.795663	1129.57677	-0.26399	-0.00014937	0.068448	3.8727E-05	-0.19555	-0.00011064	565.7957865388428	88.864	0.65954	88.864	88.561	89.221	0					27	12	3	0	0	0	0.011418	1	32615	32615		152.41	41.738	1	6883700			62018	3188	45272	45627	60396	60396					0.017168241263561868
WLQDQIQTV	9	Unmodified	_WLQDQIQTV_					0	0	0		ENSG00000113966|ENST00000463745|ARL6	ENSG00000113966|ENST00000463745|ARL6	ENSG00000113966|ENST00000463745|ARL6	MULTI-SECPEP	A375_MHC_IP_R2	2	566.1951904296875	2	565.795663	1129.57677	-0.36639	-0.0002073	-0.37639	-0.00021296	-0.74278	-0.00042026	565.7954813360927	88.236	1.3672	88.968	88.519	89.886	0.7318					44	26	3	0	0	0	0.035151	1	33552	33552		126.57	26.811	1	6732900			62019	3188	45272	45627	60397	60397					0.017168241263561868
WLQGIPAA	8	Unmodified	_WLQGIPAA_					0	0	0			REV__chr1:212421663-212442546|260|32.78|0.04|9.61|+|0|TE_info:PRIMA41-int,PRIMA41-int_dup11,ERV1,LTR,donor,+,212421593,212421663|None,NENF|1	REV__chr1:212421663-212442546|260|32.78|0.04|9.61|+|0|TE_info:PRIMA41-int,PRIMA41-int_dup11,ERV1,LTR,donor,+,212421593,212421663|None,NENF|1	MSMS	A375_MHC_IP_R1	1	428.2727355957031	2	428.239796	854.465038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.214	1	24.214	23.714	24.714	0								0	0	0	0.16876	1	6818	6818		13.508	3.3245	1		+		62020	15672	45273	45628	60398	60398					0.03198434559897123
WLQGQLPLL	9	Unmodified	_WLQGQLPLL_					0	0	0			REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	MULTI-SECPEP	A375_MHC_IP_R1	1	534.7154541015625	2	534.316035	1066.61752	-0.99912	-0.00053384	0.66583	0.00035576	-0.33329	-0.00017808	534.316370042998	68.285	0.55854	68.285	68.006	68.565	0					15	10	2	0	0	0	0.76187	1	24786	24786		7.2892	3.3448	1	1710100	+		62021	27531	45274	45629	60399	60399					0.08687210236666942
WLQTLPPV	8	Unmodified	_WLQTLPPV_					0	0	0			REV__ENST00000446716.5_1_2:220084153-220084420:-|nuORF	REV__ENST00000446716.5_1_2:220084153-220084420:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	477.72296142578125	2	477.276378	952.538203	-0.69628	-0.00033232	-0.10608	-5.0628E-05	-0.80235	-0.00038294	477.27650269722506	91.037	0.70975	91.037	90.794	91.503	0					19	13	3	0	0	0	0.72109	1	33490	33490		28.173	0.54443	1	1937300	+		62022	24859	45275	45630	60400	60400					0.06003563282536106
WLRHDRRRWRH	11	Unmodified	_WLRHDRRRWRH_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MSMS	A375_MHC_IP_R2	2	837.4186401367188	2	837.459065	1672.90358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.2	1	126.49	125.99	126.99	0.2951								0	0	0	0.16265	1	49358	49358		4.897	3.8255	1				62023	7848	45276	45631	60401	60401					0.09404082582341289
WLRHVARSWV	10	Unmodified	_WLRHVARSWV_					0	0	0			REV__ENST00000487519.5_1_10:60145183-60146060:+|nuORF	REV__ENST00000487519.5_1_10:60145183-60146060:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	436.6180114746094	3	437.247396	1308.72036	-0.19006	-8.3102E-05	0.093818	4.1022E-05	-0.096239	-4.208E-05	437.24726908550144	68.896	0.30443	69.632	69.423	69.728	0.73511					11	5	3	0	0	0	0.93873	1	26086	26086		7.9454	3.8288	1	945520	+		62024	25334	45277	45632	60402	60402					0.07834715747981136
WLRHVARSWV	10	Unmodified	_WLRHVARSWV_					0	0	0			REV__ENST00000487519.5_1_10:60145183-60146060:+|nuORF	REV__ENST00000487519.5_1_10:60145183-60146060:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	437.247396	1308.72036	0.21454	9.3807E-05	-0.45405	-0.00019853	-0.23951	-0.00010472	437.2472761117768	69.93	0.30264	69.93	69.782	70.085	0	0.14931	-0.0005797	NaN	5.0475	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	735350	+		62025	25334	45277	45632							0.07834715747981136
WLRLKAVVGY	10	Unmodified	_WLRLKAVVGY_					0	0	0		ENSG00000161996|ENST00000293879|WDR90;ENST00000552728.5_1_16:708591-715679:+|nuORF;ENST00000547407.5_1_16:706280-710806:+|nuORF;ENST00000552683.5_1_16:707859-713132:+|nuORF;ENST00000546516.5_1_16:705169-713132:+|nuORF	ENSG00000161996|ENST00000293879|WDR90	ENSG00000161996|ENST00000293879|WDR90	MULTI-SECPEP	A375_MHC_IP_R2	2	401.9514465332031	3	402.244881	1203.71281	-0.32815	-0.000132	2.8184	0.0011337	2.4902	0.0010017	402.58043136393616	20.35	0.30436	20.96	20.855	21.16	0.61029					6	5	2	0	0	0	0.93578	1	6353	6353		8.9762	3.5735	1	254510			62026	6500	45278	45633	60403	60403					0.11910563427704801
WLRNQVIAPLT	11	Unmodified	_WLRNQVIAPLT_					0	0	0		ENST00000533277.5_1_11:66611269-66612734:+|nuORF;ENSG00000173653|ENST00000309657|RCE1	ENST00000533277.5_1_11:66611269-66612734:+|nuORF	ENST00000533277.5_1_11:66611269-66612734:+|nuORF	MSMS	A375_MHC_IP_R2	2	437.6535949707031	3	437.590828	1309.75066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.73	1	140.78	140.28	141.28	0.04216								0	0	0	0.16334	1	55078	55078		0.45452	0	1				62027	7817	45279	45634	60404	60404					0.10817029622535301
WLRRTKLHWHF	11	Unmodified	_WLRRTKLHWHF_					0	0	0			REV__nc|ENSG00000101443|Q14508-5|WFDC2	REV__nc|ENSG00000101443|Q14508-5|WFDC2	MULTI-SECPEP	A375_MHC_IP_R2	2	526.7142333984375	3	527.29675	1578.86842	-0.46201	-0.00024362	-1.2491	-0.00065865	-1.7111	-0.00090226	527.6311114053566	108.35	0.25504	109.1	108.97	109.22	0.75436					6	4	2	0	0	0	1.0007	1	40916	40916		0.50596	0.41111	1	549270	+		62028	27150	45280	45635	60405	60405					0.10214027001825343
WLRVTRKQERY	11	Unmodified	_WLRVTRKQERY_					0	0	0			REV__DPP6|p.G163R|1|0.43|ENSG00000130226|chr7:154540561-154540561|G/A|missense_variant	REV__DPP6|p.G163R|1|0.43|ENSG00000130226|chr7:154540561-154540561|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	512.6904907226562	3	512.291553	1533.85283	-1.299	-0.00066546	-0.20061	-0.00010277	-1.4996	-0.00076823	512.6259745960936	53.472	0.45967	54.223	54.046	54.505	0.75105					21	8	3	0	0	0	1.0012	1	20197	20197		1.2148	0	1	5525100	+		62029	16031	45281	45636	60406	60406					0.10725695694145543
WLRWLLRTRQF	11	Unmodified	_WLRWLLRTRQF_					0	0	0			REV__ENST00000493723.5_1_7:24756537-24789393:-|nuORF	REV__ENST00000493723.5_1_7:24756537-24789393:-|nuORF	MSMS	A375_MHC_IP_R1	1	525.68798828125	3	525.640405	1573.89939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.023	1	80.023	79.523	80.523	0								0	0	0	0.16265	1	29213	29213		2.2527	0	1		+		62030	25426	45282	45637	60407	60407					0.1353918031604735
WLRWLLRTRQF	11	Unmodified	_WLRWLLRTRQF_					0	0	0			REV__ENST00000493723.5_1_7:24756537-24789393:-|nuORF	REV__ENST00000493723.5_1_7:24756537-24789393:-|nuORF	MSMS	A375_MHC_IP_R2	2	525.7029418945312	3	525.640405	1573.89939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.246	1	79.991	79.491	80.491	0.74474								0	0	0	0.16213	1	30073	30073		6.2344	0.36622	1		+		62031	25426	45282	45637	60408	60408					0.1353918031604735
WLRWLLRTRQF	11	Unmodified	_WLRWLLRTRQF_					0	0	0			REV__ENST00000493723.5_1_7:24756537-24789393:-|nuORF	REV__ENST00000493723.5_1_7:24756537-24789393:-|nuORF	MSMS	A375_MHC_IP_R2	2	525.687744140625	3	525.640405	1573.89939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.341	1	80.086	79.586	80.586	0.74474								0	0	0	0.16213	1	30108	30108		3.8459	0	1		+		62032	25426	45282	45637	60409	60409					0.1353918031604735
WLSLVVLVLR	10	Unmodified	_WLSLVVLVLR_					0	0	0			REV__ENSG00000095752|ENST00000264563|IL11	REV__ENSG00000095752|ENST00000264563|IL11	MSMS	A375_MHC_IP_R1	1	599.4418334960938	2	599.389534	1196.76451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129	1	129	128.5	129.5	0								0	0	0	0.15531	1	49574	49574		3.5965	0	1		+		62033	16999	45283	45638	60410	60410					0.17400307121602054
WLTCFFGDD	9	Unmodified	_WLTCFFGDD_					0	0	0		ENST00000531036.2_1_11:66443753-66444014:-|nuORF	ENST00000531036.2_1_11:66443753-66444014:-|nuORF	ENST00000531036.2_1_11:66443753-66444014:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	552.1834716796875	2	552.228768	1102.44298	-0.49538	-0.00027356	-2.1458	-0.001185	-2.6412	-0.0014585	552.7285660668235	101.24	0.45676	101.24	100.94	101.39	0					10	8	2	0	0	0	0.76187	1	37148	37148		7.2892	1.0834	1	930630			62034	13163	45284	45639	60411	60411					-0.10414157970831184
WLTKKYLIRWL	11	Unmodified	_WLTKKYLIRWL_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-SECPEP	A375_MHC_IP_R2	2	507.19061279296875	3	507.309773	1518.90749	-0.6739	-0.00034188	0.50851	0.00025797	-0.16539	-8.3905E-05	507.309893755671	133.06	1.2195	133.23	132.48	133.7	0.16487					71	23	4	0	0	0	1.0015	1	52334	52334		0	0	1	20946000	+		62035	22304	45285	45640	60412	60412					0.16879314512834753
WLTVLPEEDS	10	Unmodified	_WLTVLPEEDS_					0	0	0		FGFR4|p.P356S|1|0.36|ENSG00000160867|chr5:177093146-177093146|C/T|missense_variant	FGFR4|p.P356S|1|0.36|ENSG00000160867|chr5:177093146-177093146|C/T|missense_variant	FGFR4|p.P356S|1|0.36|ENSG00000160867|chr5:177093146-177093146|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	594.6758422851562	2	594.792786	1187.57102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.412	1	64.412	63.912	64.912	0								0	0	0	0.15332	1	23303	23303		10.074	0	1				62036	13998	45286	45641	60413	60413					-0.015263191759459005
WLVGIEWWE	9	Unmodified	_WLVGIEWWE_					0	0	0		ENST00000240185.7_1_1:11082714-11082762:+|nuORF	ENST00000240185.7_1_1:11082714-11082762:+|nuORF	ENST00000240185.7_1_1:11082714-11082762:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	406.62738037109375	3	406.537842	1216.5917	-0.24581	-9.9932E-05	3.736	0.0015188	3.4902	0.0014189	406.53901628801987	34.279	0.40918	35.032	34.955	35.364	0.75225					12	7	2	0	0	0	0.78348	1	12498	12498		0.96228	0	1	1476500			62037	10166	45287	45642	60414	60414					-0.007936840056345318
WLVWLLRPL	9	Unmodified	_WLVWLLRPL_					0	0	0			REV__ENST00000292431.4_1_19:13250289-13250439:+|nuORF	REV__ENST00000292431.4_1_19:13250289-13250439:+|nuORF	MSMS	A375_MHC_IP_R1	1	399.6505126953125	3	399.249855	1194.72774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.716	1	11.716	11.216	12.216	0								0	0	0	0.15486	1	2687	2687		0.26902	0.062163	1		+		62038	23367	45288	45643	60415	60415					0.13816055295728802
WLWGSPVGSV	10	Unmodified	_WLWGSPVGSV_					0	0	0		ENST00000523402.5_1_8:22411983-22419017:+|nuORF	ENST00000523402.5_1_8:22411983-22419017:+|nuORF	ENST00000523402.5_1_8:22411983-22419017:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	544.6683349609375	2	544.282192	1086.54983	-0.80869	-0.00044016	0.2526	0.00013749	-0.55609	-0.00030267	544.7835298724234	90.663	0.40829	90.663	90.488	90.896	0					16	7	3	0	0	0	0.78945	1	33366	33366		19.257	0	1	937790			62039	13042	45289	45644	60416	60416					0.010017603058486202
WLWIRLVYPLL	11	Unmodified	_WLWIRLVYPLL_					0	0	0			REV__ENST00000367742.7_1_1:171561357-171561441:+|nuORF	REV__ENST00000367742.7_1_1:171561357-171561441:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	736.8447265625	2	736.44484	1470.87513	-0.63664	-0.00046885	0.47781	0.00035188	-0.15884	-0.00011697	736.444995135026	138.39	0.40738	138.48	138.32	138.72	0.083969					16	7	3	0	0	0	0.73925	1	54282	54282		0.30703	0.30703	1	2340400	+		62040	23980	45290	45645	60417	60417					0.15852527109836956
WLWLLFHAPGS	11	Unmodified	_WLWLLFHAPGS_					0	0	0		ENST00000609803.2_1_12:46120990-46121053:-|nuORF	ENST00000609803.2_1_12:46120990-46121053:-|nuORF	ENST00000609803.2_1_12:46120990-46121053:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	442.400146484375	3	442.904636	1325.69208	0.03364	1.4899E-05	0.8722	0.0003863	0.90584	0.0004012	442.90501628148024	20.404	0.66405	20.404	20.18	20.844	0					32	12	3	0	0	0	0.99563	1	5303	5303		7.9454	7.9454	1	4991100			62041	13939	45291	45646	60418	60418					0.04225973048028209
WLWSKRTV	8	Unmodified	_WLWSKRTV_					0	0	0			REV__ENSG00000074071|ENST00000397375|MRPS34	REV__ENSG00000074071|ENST00000397375|MRPS34	MULTI-MSMS	A375_MHC_IP_R2	2	538.3425903320312	2	538.306001	1074.59745	-0.94082	-0.00050645	-0.069215	-3.7259E-05	-1.01	-0.00054371	538.3057865198753	55.557	0.60751	56.308	55.984	56.591	0.75075					30	11	4	0	0	0	0.76248	1	21049	21049		16.942	0	1	7482600	+		62042	16631	45292	45647	60419	60419					0.06313459296711699
WLWTWWINFLF	11	Unmodified	_WLWTWWINFLF_					0	0	0		SLCO6A1|p.L554*|1|0.21|ENSG00000205359|chr5:102399708-102399708|A/-|frameshift_variant;nc|ENSG00000205359|Q86UG4-2|SLCO6A1;ENSG00000205359|ENST00000506729|SLCO6A1	SLCO6A1|p.L554*|1|0.21|ENSG00000205359|chr5:102399708-102399708|A/-|frameshift_variant	SLCO6A1|p.L554*|1|0.21|ENSG00000205359|chr5:102399708-102399708|A/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	806.4104614257812	2	806.410998	1610.80744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.851	1	92.586	92.086	93.086	0.7345								0	0	0	0.16354	1	34932	34932		0.30703	0.30703	1				62043	9511	45293	45648	60420	60420					0.02647077179040025
WLWVCHIWLLL	11	Unmodified	_WLWVCHIWLLL_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|158|1|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|158|1|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|2.5826115789470663|0.0778290538073656|5.05|454.0|158|1|anti-sense	MSMS	A375_MHC_IP_R1	1	494.6893615722656	3	494.609054	1480.80533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.88	1	82.88	82.38	83.38	0								0	0	0	0.16301	1	30317	30317		3.0723	0.22898	1				62044	14274	45294	45649	60421	60421					0.08416325169582706
WMCNWHMMY	9	Unmodified	_WMCNWHMMY_					0	0	0		ENST00000568509.2_1_16:89565381-89565444:+|nuORF	ENST00000568509.2_1_16:89565381-89565444:+|nuORF	ENST00000568509.2_1_16:89565381-89565444:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	651.6399536132812	2	651.239775	1300.465	-0.31588	-0.00020571	0.32306	0.00021039	0.0071751	4.6727E-06	651.2402814745585	97.92	3.0432	97.92	96.68	99.723	0					125	59	3	0	0	0	0.75523	1	36310	36310		2.0598	2.0598	1	3394500			62045	13581	45295	45650	60422	60422					-0.17321716089918482
WMEKELGLY	9	Unmodified	_WMEKELGLY_					0	0	0		nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	MSMS	A375_MHC_IP_R1	1	584.6823120117188	2	584.788992	1167.56343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.482	1	87.482	86.982	87.982	0								0	0	0	0.14631	1	32098	32098		27.629	1.3607	1				62046	4020	45296	45651	60423	60423					-0.01364749977210522
WMEPIMGQE	9	Unmodified	_WMEPIMGQE_					0	0	0			REV__ENSG00000165943|ENST00000298894|MOAP1	REV__ENSG00000165943|ENST00000298894|MOAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	560.1680297851562	2	560.743728	1119.4729	-0.55992	-0.00031397	-0.64909	-0.00036397	-1.209	-0.00067794	560.7437019241413	42.662	0.45587	43.434	43.268	43.724	0.7724					9	8	2	0	0	0	0.59098	1	15865	15865		27.629	1.3607	1	683630	+		62047	20638	45297	45652	60424	60424					-0.08205542297127977
WMEQTTPY	8	Unmodified	_WMEQTTPY_					0	0	0			REV__tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1	REV__tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	528.6294555664062	2	528.228768	1054.44298	-0.51615	-0.00027264	1.1256	0.0005946	0.60949	0.00032195	528.2295552300985	83.239	0.76016	83.239	82.823	83.583	0					15	14	2	0	0	0	0.96266	1	30450	30450		11.64	11.64	1	1690100	+		62048	28756	45298	45653	60425	60425					-0.08206157970835193
WMLLRCTL	8	Unmodified	_WMLLRCTL_					0	0	0		ENST00000405995.5_1_9:134373297-134373522:+|nuORF	ENST00000405995.5_1_9:134373297-134373522:+|nuORF	ENST00000405995.5_1_9:134373297-134373522:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	517.7050170898438	2	518.277541	1034.54053	-0.74988	-0.00038865	0.81719	0.00042353	0.067304	3.4882E-05	518.2781165088612	74.513	0.4579	75.25	74.907	75.365	0.73752					12	8	2	0	0	0	0.92636	1	28320	28320		11.64	11.64	1	898860			62049	11598	45299	45654	60426	60426					0.024639524243184496
WMLTRKQF	8	Unmodified	_WMLTRKQF_					0	0	0		nc|ENSG00000105889|Q6NZ63|STEAP1B;chr7:22493779-22494772|401|11.62|0.24|5.62|-|ENST00000406890|STEAP1B,STEAP1B;ENSG00000105889|ENST00000678116|STEAP1B;ENST00000483679.1_1_7:22532171-22534501:-|nuORF;ENST00000475789.1_1_7:89789075-89791404:+|nuORF;ENSG00000164647|ENST00000297205|STEAP1;nc|ENSG00000105889|Q6NZ63-2|STEAP1B;chr7:22438755-22492565|413|11.46|0.48|4.57|-|ENST00000404369|STEAP1B,STEAP1B	nc|ENSG00000105889|Q6NZ63|STEAP1B	nc|ENSG00000105889|Q6NZ63|STEAP1B	MULTI-SECPEP	A375_MHC_IP_R1	1	369.9149475097656	3	370.535667	1108.58517	0.52317	0.00019385	1.0607	0.00039301	1.5838	0.00058687	370.5359039613346	22.957	0.2509	22.957	22.773	23.024	0					6	4	2	0	0	0	0.972	1	6150	6150		6.2058	0	1	1350600			62050	500	45300	45655	60427	60427					0.035220995619965834
WMRKLAFRYRR	11	Unmodified	_WMRKLAFRYRR_					0	0	0		nc|ENSG00000112319|O95677-5|EYA4;nc|ENSG00000112319|O95677-2|EYA4;nc|ENSG00000112319|O95677-4|EYA4;ENSG00000112319|ENST00000355286|EYA4;nc|ENSG00000064655|O00167-2|EYA2;ENSG00000064655|ENST00000327619|EYA2;nc|ENSG00000064655|O00167-3|EYA2;ENST00000496494.5_1_8:72111577-72234167:-|nuORF;nc|ENSG00000104313|Q99502-3|EYA1;nc|ENSG00000104313|Q99502-2|EYA1;ENSG00000104313|ENST00000340726|EYA1	nc|ENSG00000112319|O95677-5|EYA4;ENST00000496494.5_1_8:72111577-72234167:-|nuORF	nc|ENSG00000112319|O95677-5|EYA4	MSMS	A375_MHC_IP_R2	2	792.109130859375	2	791.948621	1581.88269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.34	1	124.67	124.17	125.17	0.32969								0	0	0	0.16337	1	48054	48054		1.1933	0.88631	1				62051	3077;2495	45301	45656	60428	60428					0.11502356158462135
WMRRMRILHRL	11	Unmodified	_WMRRMRILHRL_					0	0	0		ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	523.7030639648438	3	523.302741	1566.88639	-0.46367	-0.00024264	0.58733	0.00030735	0.12366	6.4712E-05	523.3035272360726	133.73	1.0144	133.9	133.2	134.21	0.16487					57	19	5	0	0	0	0.73925	1	52647	52647		0.08335	0.08335	1	9141400			62052	11882	45302	45657	60429	60429					0.12562702660693503
WMSICLYTF	9	Unmodified	_WMSICLYTF_					0	0	0		ENST00000485535.5_1_3:48445895-48454598:-|nuORF;nc|ENSG00000164050|O43157-2|PLXNB1;ENSG00000164050|ENST00000296440|PLXNB1;ENST00000461261.1_1_3:48453511-48454330:-|nuORF	ENST00000485535.5_1_3:48445895-48454598:-|nuORF	ENST00000485535.5_1_3:48445895-48454598:-|nuORF	MSMS	A375_MHC_IP_R1	1	582.208984375	2	582.266838	1162.51912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.557	1	87.557	87.057	88.057	0								0	0	0	0.15486	1	32129	32129		11.64	3.7301	1				62053	6763	45303	45658	60430	60430					-0.05563477395071459
WMYVTWFFWFW	11	Unmodified	_WMYVTWFFWFW_					0	0	0		ENSG00000186908|ENST00000426126|ZDHHC17	ENSG00000186908|ENST00000426126|ZDHHC17	ENSG00000186908|ENST00000426126|ZDHHC17	MULTI-SECPEP	A375_MHC_IP_R1	1	566.6929321289062	3	566.924931	1697.75296	-0.57918	-0.00032835	-1.6959	-0.00096145	-2.2751	-0.0012898	566.9240212679546	28.04	0.30112	28.04	27.887	28.188	0					10	5	3	0	0	0	1.0014	1	8599	8599		0.45452	0.45452	1	3045800			62054	8790	45304	45659	60431	60431					-0.06800257964073353
WMYVTWFFWFW	11	Unmodified	_WMYVTWFFWFW_					0	0	0		ENSG00000186908|ENST00000426126|ZDHHC17	ENSG00000186908|ENST00000426126|ZDHHC17	ENSG00000186908|ENST00000426126|ZDHHC17	MULTI-SECPEP	A375_MHC_IP_R2	2	566.6929321289062	3	566.924931	1697.75296	-0.32824	-0.00018609	-2.9174	-0.001654	-3.2457	-0.0018401	566.923959167673	27.445	0.45587	28.124	27.996	28.452	0.67857					12	8	2	0	0	0	1.0014	1	9354	9354		0.45452	0.35968	1	2882900			62055	8790	45304	45659	60432	60432					-0.06800257964073353
WNCCNERMWER	11	Unmodified	_WNCCNERMWER_					0	0	0			REV__nc|ENSG00000113391|Q8WUF8-4|ARB2A	REV__nc|ENSG00000113391|Q8WUF8-4|ARB2A	MSMS	A375_MHC_IP_R2	2	763.8078002929688	2	763.80793	1525.60131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.59	1	144.61	144.11	145.11	0.024414								0	0	0	0.1636	1	56473	56473		0	0	1		+		62056	17777	45305	45660	60433	60433					-0.140469303257305
WNDNVDHV	8	Unmodified	_WNDNVDHV_					0	0	0			REV__ENSG00000179776|ENST00000341529|CDH5	REV__ENSG00000179776|ENST00000341529|CDH5	MSMS	A375_MHC_IP_R2	2	499.6869201660156	2	499.719956	997.425358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.502	1	71.236	70.736	71.736	0.73421								0	0	0	0.16876	1	26726	26726		18.135	0	1		+		62057	21579	45306	45661	60434	60434					-0.07345737181469758
WNEELQMM	8	Unmodified	_WNEELQMM_					0	0	0		ENST00000254109.9_1_16:31717352-31718325:+|nuORF;ENST00000563678.1_1_16:31717492-31719413:+|nuORF	ENST00000254109.9_1_16:31717352-31718325:+|nuORF	ENST00000254109.9_1_16:31717352-31718325:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	541.6884765625	2	540.728077	1079.4416	-1.2107	-0.00065468	-0.20313	-0.00010984	-1.4139	-0.00076451	540.7277872353131	37.426	0.56185	38.197	37.968	38.53	0.7709					27	10	3	0	0	0	0.77643	1	13619	13619		7.9102	0	1	7852600			62058	10223	45307	45662	60435	60435					-0.09494115331244757
WNEKLPTY	8	Unmodified	_WNEKLPTY_					0	0	0			REV__ENSG00000115946|ENST00000263657|PNO1	REV__ENSG00000115946|ENST00000263657|PNO1	MSMS	A375_MHC_IP_R1	1	525.6845703125	2	525.766374	1049.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.625	1	56.625	56.125	57.125	0								0	0	0	0.16876	1	20290	20290		19.439	6.3965	1		+		62059	17925	45308	45663	60436	60436					-0.004582324480907118
WNIKYYNFLTF	11	Unmodified	_WNIKYYNFLTF_					0	0	0			REV__TECTA|p.E185K|2|0.43|ENSG00000109927|chr11:121113138-121113138|G/A|missense_variant	REV__TECTA|p.E185K|2|0.43|ENSG00000109927|chr11:121113138-121113138|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	503.67156982421875	3	503.590605	1507.74999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.355	1	32.355	31.855	32.855	0								0	0	0	0.16313	1	10447	10447		2.4348	0	1		+		62060	28089	45309	45664	60437	60437					0.016421901827698093
WNKLLRRIFP	10	Unmodified	_WNKLLRRIFP_					0	0	0			REV__ENST00000369800.5_1_5:172116953-172117430:+|nuORF	REV__ENST00000369800.5_1_5:172116953-172117430:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	447.6728820800781	3	448.275063	1341.80336	-0.1466	-6.5715E-05	1.4994	0.00067213	1.3528	0.00060642	448.275811605524	137.08	0.46255	137.19	137.02	137.48	0.11133					11	8	2	0	0	0	0.95024	1	53802	53802		0.69767	0	1	2409700	+		62061	24020	45310	45665	60438	60438					0.14613032475972432
WNLWTWTK	8	Unmodified	_WNLWTWTK_					0	0	0			REV__ENSG00000206190|ENST00000555815|ATP10A	REV__ENSG00000206190|ENST00000555815|ATP10A	MULTI-MSMS	A375_MHC_IP_R1	1	379.26287841796875	3	378.862548	1133.56581	0.3879	0.00014696	0.23274	8.8177E-05	0.62065	0.00023514	378.8626069629694	63.376	0.51122	63.376	63.121	63.632	0					16	9	2	0	0	0	0.77544	1	22932	22932		11.495	1.3441	1	1729800	+		62062	22592	45311	45666	60439	60439					0.0043746654273491
WNNYPYMHQYM	11	Unmodified	_WNNYPYMHQYM_					0	0	0		GRIN2A|p.R695W|1|0.27|ENSG00000183454|chr16:9822349-9822349|G/A|missense_variant	GRIN2A|p.R695W|1|0.27|ENSG00000183454|chr16:9822349-9822349|G/A|missense_variant	GRIN2A|p.R695W|1|0.27|ENSG00000183454|chr16:9822349-9822349|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	773.89306640625	2	773.815747	1545.61694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.53	1	146.53	146.03	147.03	0								0	0	0	0.1636	1	56052	56052		0	0	1				62063	14083	45312	45667	60440	60440					-0.1340432053702898
WNPRRWWRWCW	11	Unmodified	_WNPRRWWRWCW_					0	0	0		ENST00000564348.5_1_19:7982609-7983760:+|nuORF;ENST00000566166.1_1_19:7982552-7983971:+|nuORF	ENST00000564348.5_1_19:7982609-7983760:+|nuORF	ENST00000564348.5_1_19:7982609-7983760:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	866.7561645507812	2	866.414946	1730.81534	-0.61051	-0.00052895	-0.0049098	-4.2539E-06	-0.61542	-0.00053321	866.4150893862446	67.264	0.60947	68.001	67.698	68.308	0.73631					43	11	5	0	0	0	0.73934	1	25589	25589		0	0	1	20435000			62064	13528	45313	45668	60441	60441					-0.0208367405248282
WNRRWNKVTL	10	Unmodified	_WNRRWNKVTL_					0	0	0			REV__ENST00000523091.5_1_8:23112705-23118098:+|nuORF	REV__ENST00000523091.5_1_8:23112705-23118098:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	686.8168334960938	2	686.88347	1371.75239	-0.57994	-0.00039835	1.6462	0.0011307	1.0662	0.00073237	686.8842231281517	101.55	0.45575	102.31	102.06	102.51	0.76428					17	8	3	0	0	0	0.6502	1	38517	38517		17.113	1.3743	1	1873800	+		62065	25737	45314	45669	60442	60442					0.08138083431117593
WNRSQRLW	8	Unmodified	_WNRSQRLW_					0	0	0			REV__ENSG00000135426|ENST00000449076|TESPA1	REV__ENSG00000135426|ENST00000449076|TESPA1	MULTI-MSMS	A375_MHC_IP_R1	1	573.7017211914062	2	573.301781	1144.58901	-0.20166	-0.00011561	-0.13604	-7.7992E-05	-0.3377	-0.0001936	573.3017530587211	96.435	0.71195	96.435	96.069	96.781	0					36	13	3	0	0	0	0.68907	1	35380	35380		38.151	4.0487	1	13635000	+		62066	18851	45315	45670	60443	60443					0.022499053800856927
WPAKKTVRM	9	Unmodified	_WPAKKTVRM_					0	0	0		ENST00000378845.5_1_10:12867650-12867701:+|nuORF	ENST00000378845.5_1_10:12867650-12867701:+|nuORF	ENST00000378845.5_1_10:12867650-12867701:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	372.60888671875	3	372.883066	1115.62737	0.33852	0.00012623	4.1889	0.001562	4.5274	0.0016882	372.88537229809907	20.027	0.50731	20.027	19.776	20.283	0					14	9	2	0	0	0	0.80516	1	5183	5183		2.2828	0.80087	1	1157400			62067	11319	45316	45671	60444	60444					0.07418074970360067
WPALPQLTTPT	11	Unmodified	_WPALPQLTTPT_					0	0	0			REV__POU2AF1|p.A94T|1|0.56|ENSG00000110777|chr11:111357621-111357621|C/T|missense_variant	REV__POU2AF1|p.A94T|1|0.56|ENSG00000110777|chr11:111357621-111357621|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	409.29095458984375	3	408.892284	1223.65502	-0.4201	-0.00017177	-2.1712	-0.0008878	-2.5913	-0.0010596	408.89100552032886	26.146	0.86065	26.146	25.816	26.677	0					22	16	2	0	0	0	0.72851	1	7792	7792		10.315	0.78513	1	3563600	+		62068	27825	45317	45672	60445	60445					0.0521425671158795
WPFRHKRRSWV	11	Unmodified	_WPFRHKRRSWV_					0	0	0		ENST00000504771.2_1_5:118691768-118728606:+|nuORF	ENST00000504771.2_1_5:118691768-118728606:+|nuORF	ENST00000504771.2_1_5:118691768-118728606:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	519.6763916015625	3	518.956616	1553.84802	-0.50577	-0.00026247	0.33642	0.00017459	-0.16935	-8.7887E-05	519.2911407818539	57.471	0.71286	57.471	57.211	57.923	0					24	13	3	0	0	0	0.73795	1	20646	20646		1.3296	0	1	2411500			62069	12828	45318	45673	60446	60446					0.09324856341982013
WPFRHKRRSWV	11	Unmodified	_WPFRHKRRSWV_					0	0	0		ENST00000504771.2_1_5:118691768-118728606:+|nuORF	ENST00000504771.2_1_5:118691768-118728606:+|nuORF	ENST00000504771.2_1_5:118691768-118728606:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	519.67578125	3	518.956616	1553.84802	-1.1174	-0.00057989	-0.44462	-0.00023074	-1.562	-0.00081063	518.956404055426	56.654	0.81753	57.404	57.152	57.969	0.75014					26	15	3	0	0	0	0.73795	1	21436	21436		1.3296	0.87513	1	2567900			62070	12828	45318	45673	60447	60447					0.09324856341982013
WPIYRRHPLKW	11	Unmodified	_WPIYRRHPLKW_					0	0	0		nc|ENSG00000114902|Q9Y6A9|SPCS1;ENSG00000114902|ENST00000619898|SPCS1	nc|ENSG00000114902|Q9Y6A9|SPCS1	nc|ENSG00000114902|Q9Y6A9|SPCS1	MULTI-MSMS	A375_MHC_IP_R2	2	518.3611450195312	3	517.961367	1550.86227	-0.64095	-0.00033199	0.85187	0.00044123	0.21091	0.00010925	517.9615024727384	133.6	1.1159	133.77	133.09	134.21	0.16487					69	21	4	0	0	0	0.73902	1	52434	52434		0.08335	0.08335	1	13671000			62071	3255	45319	45674	60448	60448					0.10887508770292698
WPNCNFPEY	9	Unmodified	_WPNCNFPEY_					0	0	0		nc|ENSG00000173175|O95622-2|ADCY5;ENSG00000173175|ENST00000462833|ADCY5	nc|ENSG00000173175|O95622-2|ADCY5	nc|ENSG00000173175|O95622-2|ADCY5	MSMS	A375_MHC_IP_R1	1	585.1611938476562	2	585.239667	1168.46478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.06	1	104.06	103.56	104.56	0								0	0	0	0.15486	1	38212	38212		8.5933	0.68312	1				62072	7774	45320	45675	60449	60449					-0.11271353222264224
WPPKQWLSRKK	11	Unmodified	_WPPKQWLSRKK_					0	0	0			REV__nc|ENSG00000204815|Q96NG3-2|ODAD4	REV__nc|ENSG00000204815|Q96NG3-2|ODAD4	MULTI-SECPEP	A375_MHC_IP_R2	2	485.9809875488281	3	485.285739	1452.83539	-0.56385	-0.00027363	1.3553	0.00065769	0.79142	0.00038406	485.28631836973506	131.95	0.81274	132.14	131.85	132.66	0.18953					24	15	2	0	0	0	1.0012	1	51919	51919		1.1098	0.6038	1	1905700	+		62073	27457	45321	45676	60450	60450					0.1270840015909016
WPQVVSEDIV	10	Unmodified	_WPQVVSEDIV_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	A375_MHC_IP_R2	2	586.7020874023438	2	586.303321	1170.59209	-0.57825	-0.00033903	-0.15376	-9.0149E-05	-0.732	-0.00042918	586.3028041491249	127.33	1.9786	127.6	127.31	129.29	0.26592					64	38	2	0	0	0	0.69871	1	49875	49875		6.2058	0	1	9562800			62074	8855	45322	45677	60451	60451					0.013616909235679486
WPRQKRISF	9	Unmodified	_WPRQKRISF_					0	0	0			REV__ENSG00000244165|ENST00000321826|P2RY11	REV__ENSG00000244165|ENST00000321826|P2RY11	MSMS	A375_MHC_IP_R1	1	406.6149597167969	3	406.568247	1216.68291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.234	1	23.234	22.734	23.734	0								0	0	0	0.15386	1	6345	6345		15.248	0.29132	1		+		62075	22820	45323	45678	60452	60452					0.08323624482363812
WPRRLLRWTQW	11	Unmodified	_WPRRLLRWTQW_					0	0	0			REV__ENST00000543005.5_1_12:124118406-124132575:+|nuORF	REV__ENST00000543005.5_1_12:124118406-124132575:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	534.03466796875	3	533.300271	1596.87898	-0.71377	-0.00038065	0.89651	0.00047811	0.18274	9.7454E-05	533.3008037945322	45.77	0.45197	46.536	46.353	46.805	0.76518					17	8	3	0	0	0	1.0015	1	17174	17174		0	0	1	4236700	+		62076	25924	45324	45679	60453	60453					0.10442009656253504
WPRRRRRLQQV	11	Unmodified	_WPRRRRRLQQV_					0	0	0		nc|ENSG00000117791|Q969Z3-2|MTARC2;ENSG00000117791|ENST00000366913|MTARC2	nc|ENSG00000117791|Q969Z3-2|MTARC2	nc|ENSG00000117791|Q969Z3-2|MTARC2	MULTI-MSMS	A375_MHC_IP_R1	1	518.046142578125	3	517.646553	1549.91783	-0.88451	-0.00045786	0.25421	0.00013159	-0.6303	-0.00032627	517.6466308914618	143.14	0.95361	143.14	142.59	143.54	0					29	18	2	0	0	0	0.73934	1	54878	54878		0	0	1	4933400			62077	3512	45325	45680	60454	60454					0.16486735010630582
WPRRRRRLQQV	11	Unmodified	_WPRRRRRLQQV_					0	0	0		nc|ENSG00000117791|Q969Z3-2|MTARC2;ENSG00000117791|ENST00000366913|MTARC2	nc|ENSG00000117791|Q969Z3-2|MTARC2	nc|ENSG00000117791|Q969Z3-2|MTARC2	MULTI-MSMS	A375_MHC_IP_R2	2	518.0464477539062	3	517.646553	1549.91783	-0.54055	-0.00027981	0.19493	0.00010091	-0.34561	-0.00017891	517.6465670181652	143.16	0.80891	143.19	142.69	143.5	0.030731					44	15	4	0	0	0	0.73934	1	55900	55900		0	0	1	4740100			62078	3512	45325	45680	60455	60455					0.16486735010630582
WPRSRRFRWTL	11	Unmodified	_WPRSRRFRWTL_					0	0	0			REV__ENST00000273062.6_1_2:219270400-219270469:+|nuORF	REV__ENST00000273062.6_1_2:219270400-219270469:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	781.5288696289062	2	780.936568	1559.85858	-0.75512	-0.0005897	3.4382	0.002685	2.6831	0.0020953	780.9385868651084	136.41	0.25842	136.41	136.3	136.56	0					5	4	2	0	0	0	1.0008	1	52560	52560		1.3295	1.3295	1	348560	+		62079	23283	45326	45681	60456	60456					0.10104838996448962
WPSCTAQP	8	Unmodified	_WPSCTAQP_					0	0	0			REV__ENST00000569516.5_1_16:923326-923722:-|nuORF	REV__ENST00000569516.5_1_16:923326-923722:-|nuORF	MSMS	A375_MHC_IP_R1	1	445.16552734375	2	445.19727	888.379988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.74	1	143.74	143.24	144.24	0								0	0	0	0.16876	1	55139	55139		2.5775	0	1		+		62080	26270	45327	45682	60457	60457					-0.06866678968231099
WPSIEADP	8	Unmodified	_WPSIEADP_					0	0	0			REV__LPA|p.C1228F|1|0.2|ENSG00000198670|chr6:160591048-160591048|C/A|missense_variant	REV__LPA|p.C1228F|1|0.2|ENSG00000198670|chr6:160591048-160591048|C/A|missense_variant	MSMS	A375_MHC_IP_R2	2	457.6709899902344	2	457.71635	913.418148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.869	1	44.638	44.138	45.138	0.7691								0	0	0	0.16876	1	16359	16359		13.508	0	1		+		62081	22393	45328	45683	60458	60458					-0.042024697819101675
WPWPTSLSS	9	Unmodified	_WPWPTSLSS_					0	0	0			REV__ENST00000609672.5_3_X:64808305-64808455:+|nuORF	REV__ENST00000609672.5_3_X:64808305-64808455:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	530.676513671875	2	530.758549	1059.50255	-0.26114	-0.0001386	-0.22062	-0.00011709	-0.48176	-0.0002557	530.7583523511571	49.565	0.76351	49.565	49.184	49.947	0					40	14	4	0	0	0	0.43185	1	17676	17676		23.148	6.2061	1	19574000	+		62082	26571	45329	45684	60459	60459					-0.02482518965143754
WQALLHRIKMP	11	Unmodified	_WQALLHRIKMP_					0	0	0			REV__STAT4|p.E29K|1|0.38|ENSG00000138378|chr2:191148119-191148119|C/T|missense_variant	REV__STAT4|p.E29K|1|0.38|ENSG00000138378|chr2:191148119-191148119|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	697.2987670898438	2	696.900274	1391.786	-0.84522	-0.00058904	-0.24433	-0.00017027	-1.0895	-0.00075931	696.8996970704397	131.4	1.1137	131.4	130.82	131.93	0					53	21	3	0	0	0	0.7362	1	50598	50598		2.9952	0	1	8763500	+		62083	28055	45330	45685	60460	60460					0.10577368878648485
WQALLHRIKMP	11	Unmodified	_WQALLHRIKMP_					0	0	0			REV__STAT4|p.E29K|1|0.38|ENSG00000138378|chr2:191148119-191148119|C/T|missense_variant	REV__STAT4|p.E29K|1|0.38|ENSG00000138378|chr2:191148119-191148119|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	697.2991333007812	2	696.900274	1391.786	-0.68268	-0.00047576	-0.21752	-0.00015159	-0.9002	-0.00062735	696.8996934251796	131.28	1.2204	131.47	130.88	132.1	0.18953					55	23	3	0	0	0	0.7359	1	51748	51748		3.2813	0.28607	1	9097500	+		62084	28055	45330	45685	60461	60461					0.10577368878648485
WQAPWCERKSM	11	Unmodified	_WQAPWCERKSM_					0	0	0		nc|ENSG00000114378|Q12794-3|HYAL1;nc|ENSG00000114378|Q12794-2|HYAL1;ENSG00000114378|ENST00000395144|HYAL1;nc|ENSG00000114378|Q12794-5|HYAL1;nc|ENSG00000114378|Q12794-6|HYAL1	nc|ENSG00000114378|Q12794-3|HYAL1	nc|ENSG00000114378|Q12794-3|HYAL1	MULTI-MSMS	A375_MHC_IP_R1	1	474.9521179199219	3	474.55328	1420.63801	-0.67003	-0.00031796	-0.82006	-0.00038916	-1.4901	-0.00070713	474.5526236433488	27.832	0.35303	27.832	27.634	27.987	0					13	6	3	0	0	0	0.73195	1	8503	8503		7.0371	2.6309	1	4002000			62085	3215	45331	45686	60462	60462					-0.05548310437529835
WQAPWCERKSM	11	Unmodified	_WQAPWCERKSM_					0	0	0		nc|ENSG00000114378|Q12794-3|HYAL1;nc|ENSG00000114378|Q12794-2|HYAL1;ENSG00000114378|ENST00000395144|HYAL1;nc|ENSG00000114378|Q12794-5|HYAL1;nc|ENSG00000114378|Q12794-6|HYAL1	nc|ENSG00000114378|Q12794-3|HYAL1	nc|ENSG00000114378|Q12794-3|HYAL1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	474.55328	1420.63801	-0.67003	-0.00031796	-0.82006	-0.00038916	-1.4901	-0.00070713	474.5526236433488	27.832	0.35303	27.832	27.634	27.987	0	0.021767	-0.00021615	NaN	7.0371	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4002000			62086	3215	45331	45686							-0.05548310437529835
WQCRHRSR	8	Unmodified	_WQCRHRSR_					0	0	0		RBM23|p.R96W|1|0.37|ENSG00000100461|chr14:22906310-22906310|G/A|missense_variant	RBM23|p.R96W|1|0.37|ENSG00000100461|chr14:22906310-22906310|G/A|missense_variant	RBM23|p.R96W|1|0.37|ENSG00000100461|chr14:22906310-22906310|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	376.8664245605469	3	376.857914	1127.55191	0.025822	9.7312E-06	-2.1142	-0.00079676	-2.0884	-0.00078703	376.8570526654688	26.499	0.90629	26.499	26.221	27.128	0					23	17	2	0	0	0	0.7762	1	7848	7848		8.7454	1.6437	1	1700300			62087	15270	45332	45687	60463	60463					-0.006760894373428528
WQDLLKEPWWP	11	Unmodified	_WQDLLKEPWWP_					0	0	0		ENST00000459962.1_1_1:56962347-56977694:-|nuORF	ENST00000459962.1_1_1:56962347-56977694:-|nuORF	ENST00000459962.1_1_1:56962347-56977694:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	500.99053955078125	3	499.922355	1496.74524	-0.63974	-0.00031982	0.094885	4.7435E-05	-0.54485	-0.00027238	500.2567661545036	133.48	1.0687	133.48	133.1	134.17	0					68	20	5	0	0	0	0.73809	1	51452	51452		0.40827	0	1	9948800			62088	12160	45333	45688	60464	60464					0.016733060400383692
WQEDWNELQ	9	Unmodified	_WQEDWNELQ_					0	0	0			REV__ENSG00000198556|ENST00000331410|ZNF789	REV__ENSG00000198556|ENST00000331410|ZNF789	MULTI-SECPEP	A375_MHC_IP_R2	2	623.6905517578125	2	624.27001	1246.52547	-0.83883	-0.00052366	0.37728	0.00023553	-0.46154	-0.00028813	624.2697641397314	41.658	0.5098	42.433	42.149	42.659	0.77451					23	9	3	0	0	0	0.77396	1	15424	15424		10.074	4.3421	1	3615800	+		62089	22381	45334	45689	60465	60465					-0.0879354463834261
WQEKGRVTL	9	Unmodified	_WQEKGRVTL_					0	0	0			REV__ENST00000592621.5_2_19:5927995-5941693:-|nuORF	REV__ENST00000592621.5_2_19:5927995-5941693:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	372.92462158203125	3	372.876857	1115.60874	0.10798	4.0265E-05	0.51964	0.00019376	0.62762	0.00023403	372.87715941275417	30.961	0.55761	30.961	30.653	31.211	0					16	10	2	0	0	0	0.73141	1	9918	9918		4.1895	0	1	815650	+		62090	26450	45335	45690	60466	60466					0.05556236600182274
WQEKREIVS	9	Unmodified	_WQEKREIVS_					0	0	0		HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant;ENSG00000128731|ENST00000261609|HERC2;ENST00000570209.1_1_15:31108772-31126588:+|nuORF	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	MSMS	A375_MHC_IP_R1	1	587.7276611328125	2	587.814387	1173.61422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.88	1	112.88	112.38	113.38	0								0	0	0	0.15486	1	41377	41377		4.756	0.81161	1				62091	14109	45336	45691	60467	60467					0.03435915391992239
WQFPAHYRYRP	11	Unmodified	_WQFPAHYRYRP_					0	0	0		nc|ENSG00000117400|P40238-2|MPL	nc|ENSG00000117400|P40238-2|MPL	nc|ENSG00000117400|P40238-2|MPL	MSMS	A375_MHC_IP_R1	1	760.8604736328125	2	760.880927	1519.7473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.89	1	132.89	132.39	133.39	0								0	0	0	0.16302	1	51241	51241		2.9952	1.8019	1				62092	14559	45337	45692	60468	60468					0.008217795684913654
WQFPHPLFTLR	11	Unmodified	_WQFPHPLFTLR_					0	0	0			REV__ENST00000600659.2_1_19:8387846-8388053:+|nuORF	REV__ENST00000600659.2_1_19:8387846-8388053:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	721.8211059570312	2	721.390596	1440.76664	-0.7177	-0.00051774	0.67602	0.00048767	-0.041682	-3.0069E-05	721.3906095667879	132.85	0.7115	133.02	132.64	133.35	0.16487					34	13	3	0	0	0	0.73881	1	52306	52306		0.35063	0	1	7479000	+		62093	26501	45338	45693	60469	60469					0.06388735859400185
WQFVTYEL	8	Unmodified	_WQFVTYEL_					0	0	0			REV__SLC28A2|p.G222E|1|0.48|ENSG00000137860|chr15:45264731-45264731|G/A|missense_variant	REV__SLC28A2|p.G222E|1|0.48|ENSG00000137860|chr15:45264731-45264731|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	543.2049560546875	2	543.26875	1084.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.818	1	49.575	49.075	50.075	0.75737								0	0	0	0.16876	1	18334	18334		19.439	0	1		+		62094	27985	45339	45694	60470	60470					-0.015933483053231612
WQIAVYLC	8	Unmodified	_WQIAVYLC_					0	0	0		ENSG00000221855|ENST00000408916|TAS2R41	ENSG00000221855|ENST00000408916|TAS2R41	ENSG00000221855|ENST00000408916|TAS2R41	MULTI-SECPEP	A375_MHC_IP_R1	1	994.9779663085938	1	995.5019	994.494624	0.72906	0.00072578	2.2223	0.0022123	2.9513	0.0029381	995.5043752666602	113.98	1.0695	113.98	113.4	114.46	0					32	20	2	0	0	0	0.972	1	41949	41949		2.8892	0.31174	1	22839000			62095	9667	45340	45695	60471	60471					-0.002843694862690427
WQIHRRKQM	9	Unmodified	_WQIHRRKQM_					0	0	0			REV__ENSG00000127412|ENST00000265310|TRPV5	REV__ENSG00000127412|ENST00000265310|TRPV5	MULTI-SECPEP	A375_MHC_IP_R2	2	428.6574401855469	3	428.236503	1281.68768	-0.21862	-9.3622E-05	0.3372	0.0001444	0.11858	5.0781E-05	428.2366499225648	130.03	0.45515	130.25	130.05	130.5	0.21419					13	8	2	0	0	0	0.81166	1	51121	51121		2.7352	0.10396	1	2699900	+		62096	18418	45341	45696	60472	60472					0.05810185353448105
WQIYIRLLNYF	11	Unmodified	_WQIYIRLLNYF_					0	0	0		ENSG00000256394|ENST00000537611|ASIC5	ENSG00000256394|ENST00000537611|ASIC5	ENSG00000256394|ENST00000537611|ASIC5	MULTI-MSMS	A375_MHC_IP_R1	1	510.28515625	3	510.281883	1527.82382	-0.69986	-0.00035713	-1.279	-0.00065264	-1.9788	-0.0010098	510.28252431050146	133.27	1.4285	133.27	132.64	134.07	0					64	27	4	0	0	0	0.73881	1	51647	51647		0.50596	0.051438	1	9165600			62097	9897	45342	45697	60473	60473					0.08102158345150201
WQKIMKIL	8	Unmodified	_WQKIMKIL_					0	0	0		ENST00000395472.2_1_14:55509742-55509793:+|nuORF	ENST00000395472.2_1_14:55509742-55509793:+|nuORF	ENST00000395472.2_1_14:55509742-55509793:+|nuORF	MSMS	A375_MHC_IP_R1	1	353.7777099609375	3	353.884296	1058.63106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.567	1	17.567	17.067	18.067	0								0	0	0	0.16876	1	4127	4127		0	0	1				62098	11472	45343	45698	60474	60474					0.10408744744268006
WQKRRFLKAWL	11	Unmodified	_WQKRRFLKAWL_					0	0	0		nc|ENSG00000198089|A8K8P3-4|SFI1;nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;nc|ENSG00000198089|A8K8P3-5|SFI1;ENST00000382162.7_1_22:31904270-32000328:+|nuORF	nc|ENSG00000198089|A8K8P3-4|SFI1	nc|ENSG00000198089|A8K8P3-4|SFI1	MSMS	A375_MHC_IP_R2	2	766.3497924804688	2	766.454062	1530.89357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.99	1	133.16	132.66	133.66	0.16487								0	0	0	0.16353	1	52322	52322		0.35063	0.043601	1				62099	9228	45344	45699	60475	60475					0.14936081804398782
WQKRSRLGVPV	11	Unmodified	_WQKRSRLGVPV_					0	0	0			REV__BDP1|p.P1911Rfs*9|1|0.11|ENSG00000145734|chr5:71524281-71524305|TCCTGAACCTGTTTCTGCTCAGATT/-|frameshift_variant	REV__BDP1|p.P1911Rfs*9|1|0.11|ENSG00000145734|chr5:71524281-71524305|TCCTGAACCTGTTTCTGCTCAGATT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	662.8104858398438	2	663.39367	1324.77279	-0.66202	-0.00043918	2.6707	0.0017717	2.0087	0.0013325	663.8956323166249	137.58	1.2213	137.67	137.2	138.42	0.083969					36	23	3	0	0	0	1.0007	1	54136	54136		1.4819	0.28856	1	1008900	+		62100	15507	45345	45700	60476	60476					0.12339254090920804
WQLHAPIEVF	10	Unmodified	_WQLHAPIEVF_					0	0	0			REV__ENSG00000104321|ENST00000262209|TRPA1	REV__ENSG00000104321|ENST00000262209|TRPA1	MSMS	A375_MHC_IP_R1	1	620.2701416015625	2	620.329673	1238.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.76	1	128.76	128.26	129.26	0								0	0	0	0.15451	1	49479	49479		3.5965	0	1		+		62101	17315	45346	45701	60477	60477					0.035016937770024015
WQLMQPTPSM	10	Unmodified	_WQLMQPTPSM_					0	0	0		IRF6|p.P451L|1|0.3|ENSG00000117595|chr1:209788472-209788472|G/A|missense_variant	IRF6|p.P451L|1|0.3|ENSG00000117595|chr1:209788472-209788472|G/A|missense_variant	IRF6|p.P451L|1|0.3|ENSG00000117595|chr1:209788472-209788472|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	609.18896484375	2	609.785927	1217.5573	-0.53805	-0.00032809	0.079249	4.8325E-05	-0.4588	-0.00027977	609.7854567416695	28.012	0.35142	28.012	27.836	28.188	0					10	6	2	0	0	0	0.92514	1	8529	8529		4.897	0	1	1880800			62102	14174	45347	45702	60478	60478					-0.042775914803996784
WQLWIWFLLLI	11	Unmodified	_WQLWIWFLLLI_					0	0	0			REV__SLC13A1|p.S299F|1|0.52|ENSG00000081800|chr7:123134446-123134446|G/A|missense_variant	REV__SLC13A1|p.S299F|1|0.52|ENSG00000081800|chr7:123134446-123134446|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	765.8470458984375	2	765.947216	1529.87988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.07	1	133.07	132.57	133.57	0								0	0	0	0.16334	1	51312	51312		1.3295	1.0225	1		+		62103	27972	45348	45703	60479	60479					0.13613411252595142
WQLWIWFLLLI	11	Unmodified	_WQLWIWFLLLI_					0	0	0			REV__SLC13A1|p.S299F|1|0.52|ENSG00000081800|chr7:123134446-123134446|G/A|missense_variant	REV__SLC13A1|p.S299F|1|0.52|ENSG00000081800|chr7:123134446-123134446|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	765.8467407226562	2	765.947216	1529.87988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.8	1	141.8	141.3	142.3	0								0	0	0	0.16353	1	54416	54416		0.35063	0.35063	1		+		62104	27972	45348	45703	60480	60480					0.13613411252595142
WQLWIWFLLLI	11	Unmodified	_WQLWIWFLLLI_					0	0	0			REV__SLC13A1|p.S299F|1|0.52|ENSG00000081800|chr7:123134446-123134446|G/A|missense_variant	REV__SLC13A1|p.S299F|1|0.52|ENSG00000081800|chr7:123134446-123134446|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	765.846435546875	2	765.947216	1529.87988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.27	1	137.36	136.86	137.86	0.083969								0	0	0	0.16353	1	53884	53884		0.35063	0.043601	1		+		62105	27972	45348	45703	60481	60481					0.13613411252595142
WQLYRLWLQLY	11	Unmodified	_WQLYRLWLQLY_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	A375_MHC_IP_R1	1	528.3580322265625	3	527.9574	1580.85037	-0.51684	-0.00027287	-0.22829	-0.00012053	-0.74513	-0.0003934	527.9580015389477	63.896	0.96682	63.896	63.326	64.292	0					25	18	2	0	0	0	0.73795	1	23203	23203		0.45452	0	1	3062000			62106	3882	45349	45704	60482	60482					0.08317847236480702
WQMVVPVSR	9	Unmodified	_WQMVVPVSR_					0	0	0			REV__ENST00000499346.6_1_5:127418462-127418714:-|nuORF	REV__ENST00000499346.6_1_5:127418462-127418714:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	552.2197265625	2	551.297319	1100.58008	-0.69401	-0.00038261	-0.52906	-0.00029167	-1.2231	-0.00067427	551.2971264333904	79.618	0.71182	80.363	79.997	80.708	0.74474					46	13	4	0	0	0	0.6656	1	30298	30298		10.074	0	1	13958000	+		62107	25483	45350	45705	60483	60483					0.033817956993971166
WQNVFRTYDR	10	Unmodified	_WQNVFRTYDR_					0	0	0		ENST00000505526.1_1_5:271863-311637:+|nuORF;nc|ENSG00000249915|O75340-2|PDCD6;ENSG00000249915|ENST00000264933|PDCD6	ENST00000505526.1_1_5:271863-311637:+|nuORF	ENST00000505526.1_1_5:271863-311637:+|nuORF	MSMS	A375_MHC_IP_R1	1	692.8060913085938	2	692.841468	1383.66838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.954	1	97.954	97.454	98.454	0								0	0	0	0.15531	1	35989	35989		3.5965	0.31518	1				62108	9843	45351	45706	60484	60484					-0.008104924564349858
WQPRASWLG	9	Unmodified	_WQPRASWLG_					0	0	0			REV__ENST00000468248.5_1_20:34204975-34205587:+|nuORF	REV__ENST00000468248.5_1_20:34204975-34205587:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	367.9261474609375	3	367.526047	1099.55631	-0.26572	-9.766E-05	0.57029	0.00020959	0.30456	0.00011193	367.5261441451723	34.047	0.45493	34.799	34.5	34.955	0.75225					14	8	2	0	0	0	0.65246	1	12197	12197		20.415	3.3016	1	23237000	+		62109	25005	45352	45707	60485	60485					0.010516982572198685
WQQCDDFYE	9	Unmodified	_WQQCDDFYE_					0	0	0			REV__ENST00000355666.5_1_21:38573921-38574083:+|nuORF	REV__ENST00000355666.5_1_21:38573921-38574083:+|nuORF	MSMS	A375_MHC_IP_R1	1	617.2634887695312	2	617.229496	1232.44444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.83	1	141.83	141.33	142.33	0								0	0	0	0.15486	1	54426	54426		2.0598	0.73022	1		+		62110	23823	45353	45708	60486	60486					-0.16248568672745023
WQQPVTVRP	9	Unmodified	_WQQPVTVRP_					0	0	0		ENST00000542400.5_1_12:125432272-125432335:-|nuORF	ENST00000542400.5_1_12:125432272-125432335:-|nuORF	ENST00000542400.5_1_12:125432272-125432335:-|nuORF	MSMS	A375_MHC_IP_R2	2	370.9330749511719	3	370.873336	1109.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.084	1	45.853	45.353	46.353	0.7691								0	0	0	0.15486	1	16845	16845		4.1895	0	1				62111	13297	45354	45709	60487	60487					0.047762539457608
WQQQWQQQWWL	11	Unmodified	_WQQQWQQQWWL_					0	0	0			REV__ENST00000253055.7_1_19:40718724-40719087:+|nuORF	REV__ENST00000253055.7_1_19:40718724-40719087:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	823.2889404296875	2	822.888949	1643.76335	-0.44814	-0.00036877	0.50365	0.00041445	0.055516	4.5683E-05	822.8896294314126	53.336	0.60862	53.336	52.997	53.605	0					19	11	2	0	0	0	0.73934	1	19024	19024		0	0	1	2044000	+		62112	23134	45355	45710	60488	60488					-0.032785589852665
WQQQWQQQWWL	11	Unmodified	_WQQQWQQQWWL_					0	0	0			REV__ENST00000253055.7_1_19:40718724-40719087:+|nuORF	REV__ENST00000253055.7_1_19:40718724-40719087:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	823.0112915039062	2	822.888949	1643.76335	-0.44814	-0.00036877	0.50365	0.00041445	0.055516	4.5683E-05	822.8896294314126	53.336	0.60862	53.336	52.997	53.605	0					19	11	2	0	0	0	1.0015	1	18986	18986		0	0	1	2044000	+		62113	23134	45355	45710	60489	60489					-0.032785589852665
WQRERWQIWEL	11	Unmodified	_WQRERWQIWEL_					0	0	0		nc|ENSG00000047648|O43182-4|ARHGAP6;ENSG00000047648|ENST00000337414|ARHGAP6;ENST00000489330.6_1_X:11156985-11160533:-|nuORF	nc|ENSG00000047648|O43182-4|ARHGAP6	nc|ENSG00000047648|O43182-4|ARHGAP6	MULTI-SECPEP	A375_MHC_IP_R2	2	543.2070922851562	3	543.947675	1628.82119	-0.72073	-0.00039204	2.6236	0.0014271	1.9028	0.001035	544.2836149905272	134.06	0.71645	134.23	133.8	134.52	0.16487					23	13	3	0	0	0	1.0015	1	52697	52697		0	0	1	1827500			62114	1206	45356	45711	60490	60490					0.031937029401660766
WQRERWQIWEL	11	Unmodified	_WQRERWQIWEL_					0	0	0		nc|ENSG00000047648|O43182-4|ARHGAP6;ENSG00000047648|ENST00000337414|ARHGAP6;ENST00000489330.6_1_X:11156985-11160533:-|nuORF	nc|ENSG00000047648|O43182-4|ARHGAP6	nc|ENSG00000047648|O43182-4|ARHGAP6	MULTI-MATCH	A375_MHC_IP_R1	1		3	543.947675	1628.82119	-0.84228	-0.00045816	1.8828	0.0010241	1.0405	0.00056599	544.2826929452717	134.3	0.30328	134.3	134.12	134.42	0	0.034402	-0.00069644	NaN	0	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1425600			62115	1206	45356	45711							0.031937029401660766
WQRLRQQASP	10	Unmodified	_WQRLRQQASP_					0	0	0			REV__ENSG00000197892|ENST00000524189|KIF13B	REV__ENSG00000197892|ENST00000524189|KIF13B	MULTI-SECPEP	A375_MHC_IP_R1	1	423.65802001953125	3	423.898544	1268.6738	-0.1517	-6.4305E-05	-0.14671	-6.219E-05	-0.29841	-0.0001265	423.8984596684722	19.755	0.81181	19.755	19.368	20.18	0					37	15	3	0	0	0	0.93578	1	5074	5074		8.9762	8.9762	1	3015900	+		62116	22327	45357	45712	60491	60491					0.05021231126033854
WQRPQKRKRRE	11	Unmodified	_WQRPQKRKRRE_					0	0	0			REV__ENST00000334268.8_1_6:123658775-123687324:-|nuORF	REV__ENST00000334268.8_1_6:123658775-123687324:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	524.0398559570312	3	523.306196	1566.89676	-0.84778	-0.00044365	-0.3661	-0.00019158	-1.2139	-0.00063523	523.3058148474648	142.43	0.55577	142.43	142.08	142.64	0					30	10	4	0	0	0	0.73934	1	54619	54619		0	0	1	5011700	+		62117	23653	45358	45713	60492	60492					0.13598724911071258
WQRPQKRKRRE	11	Unmodified	_WQRPQKRKRRE_					0	0	0			REV__ENST00000334268.8_1_6:123658775-123687324:-|nuORF	REV__ENST00000334268.8_1_6:123658775-123687324:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	784.854736328125	2	784.455656	1566.89676	-0.80504	-0.00063152	-0.5874	-0.00046079	-1.3924	-0.0010923	784.4551931358086	142.44	0.5553	142.44	142.13	142.69	0					22	10	3	0	0	0	0.73897	1	54639	54639		0.35063	0.35063	1	4424000	+		62118	23653	45358	45713	60493	60493					0.13598724911071258
WQRPQKRKRRE	11	Unmodified	_WQRPQKRKRRE_					0	0	0			REV__ENST00000334268.8_1_6:123658775-123687324:-|nuORF	REV__ENST00000334268.8_1_6:123658775-123687324:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	784.8552856445312	2	784.455656	1566.89676	-0.79797	-0.00062597	0.13693	0.00010741	-0.66104	-0.00051856	784.4557868117769	142.47	0.51064	142.51	142.18	142.69	0.030731					22	9	3	0	0	0	0.73897	1	55671	55671		0.35063	0.35063	1	3587900	+		62119	23653	45358	45713	60494	60494					0.13598724911071258
WQRPQKRKRRE	11	Unmodified	_WQRPQKRKRRE_					0	0	0			REV__ENST00000334268.8_1_6:123658775-123687324:-|nuORF	REV__ENST00000334268.8_1_6:123658775-123687324:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	523.705322265625	3	523.306196	1566.89676	-0.36166	-0.00018926	-0.55272	-0.00028924	-0.91438	-0.0004785	523.3057579737272	142.53	0.66092	142.56	142.08	142.74	0.030731					30	12	3	0	0	0	0.73934	1	55674	55674		0	0	1	4743600	+		62120	23653	45358	45713	60495	60495					0.13598724911071258
WQRPQKRKRRE	11	Unmodified	_WQRPQKRKRRE_					0	0	0			REV__ENST00000334268.8_1_6:123658775-123687324:-|nuORF	REV__ENST00000334268.8_1_6:123658775-123687324:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	784.455656	1566.89676	-0.80504	-0.00063152	-0.5874	-0.00046079	-1.3924	-0.0010923	784.4551931358086	142.44	0.5553	142.44	142.13	142.69	0	-0.0335	-0.00063397	NaN	0.35063	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4424000	+		62121	23653	45358	45713							0.13598724911071258
WQRPQKRKRRE	11	Unmodified	_WQRPQKRKRRE_					0	0	0			REV__ENST00000334268.8_1_6:123658775-123687324:-|nuORF	REV__ENST00000334268.8_1_6:123658775-123687324:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	784.455656	1566.89676	-0.79797	-0.00062597	0.13693	0.00010741	-0.66104	-0.00051856	784.4557868117769	142.47	0.51064	142.51	142.18	142.69	0.030731	0.0335	0.00050244	NaN	0.35063	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3587900	+		62122	23653	45358	45713							0.13598724911071258
WQRQFLRMKWL	11	Unmodified	_WQRQFLRMKWL_					0	0	0			REV__ENSG00000215910|ENST00000688073|C1orf167	REV__ENSG00000215910|ENST00000688073|C1orf167	MULTI-MSMS	A375_MHC_IP_R2	2	531.6710205078125	3	531.294129	1590.86056	-0.81524	-0.00043313	0.014325	7.6109E-06	-0.80091	-0.00042552	531.2940818993152	54.847	1.3718	55.598	54.865	56.237	0.75075					79	26	5	0	0	0	0.73795	1	20595	20595		0.45452	0	1	210590000	+		62123	22678	45359	45714	60496	60496					0.08876131690021793
WQRQFLRMKWL	11	Unmodified	_WQRQFLRMKWL_					0	0	0			REV__ENSG00000215910|ENST00000688073|C1orf167	REV__ENSG00000215910|ENST00000688073|C1orf167	MULTI-SECPEP	A375_MHC_IP_R2	2	531.1941528320312	3	531.294129	1590.86056	-0.76961	-0.00040889	1.3513	0.00071796	0.58173	0.00030907	531.2952697727976	62.391	0.40802	63.133	62.925	63.333	0.74263					16	7	3	0	0	0	1.0011	1	23713	23713		0.45452	0	1	2042900	+		62124	22678	45359	45714	60497	60497					0.08876131690021793
WQRQFLRMKWL	11	Unmodified	_WQRQFLRMKWL_					0	0	0			REV__ENSG00000215910|ENST00000688073|C1orf167	REV__ENSG00000215910|ENST00000688073|C1orf167	MULTI-MATCH	A375_MHC_IP_R1	1		3	531.294129	1590.86056	-0.52562	-0.00027926	1.3074	0.00069462	0.7818	0.00041536	531.2951595674735	63.123	0.30769	63.123	62.966	63.274	0	-0.0049308	-2.7591E-05	NaN	0.45452	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1196800	+		62125	22678	45359	45714							0.08876131690021793
WQRQREQP	8	Unmodified	_WQRQREQP_					0	0	0			REV__nc|ENSG00000136830|Q96TA1-2|NIBAN2	REV__nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-SECPEP	A375_MHC_IP_R1	1	563.6472778320312	2	564.288871	1126.56319	-0.11613	-6.5528E-05	2.1105	0.0011909	1.9944	0.0011254	564.2899909366542	126.45	0.50464	126.45	126.15	126.66	0					13	9	2	0	0	0	0.972	1	48377	48377		5.2307	1.9494	1	2162400	+		62126	18960	45360	45715	60498	60498					0.00497011137804293
WQRQRQRRQRP	11	Unmodified	_WQRQRQRRQRP_					0	0	0			REV__ENST00000247706.3_1_19:17411946-17414055:-|nuORF	REV__ENST00000247706.3_1_19:17411946-17414055:-|nuORF	MSMS	A375_MHC_IP_R1	1	797.9500122070312	2	797.94853	1593.88251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.135	1	94.135	93.635	94.635	0								0	0	0	0.16353	1	34599	34599		0.35063	0.35063	1		+		62127	23117	45361	45716	60499	60499					0.10932072482819422
WQRRRWLRPTR	11	Unmodified	_WQRRRWLRPTR_					0	0	0		nc|ENSG00000105618|Q8WWY3-2|PRPF31	nc|ENSG00000105618|Q8WWY3-2|PRPF31	nc|ENSG00000105618|Q8WWY3-2|PRPF31	MULTI-SECPEP	A375_MHC_IP_R1	1	403.2720031738281	4	403.486734	1609.91783	-0.45272	-0.00018267	-0.69129	-0.00027893	-1.144	-0.00046159	403.486422514107	25.442	0.25537	25.442	25.306	25.562	0					6	4	2	0	0	0	1.0015	1	7445	7445		0	0	1	1573200			62128	14526	45362	45717	60500	60500					0.1372673501061854
WQRSNVKLKT	10	Unmodified	_WQRSNVKLKT_					0	0	0		ENST00000431361.1_1_20:61432246-61432384:-|nuORF	ENST00000431361.1_1_20:61432246-61432384:-|nuORF	ENST00000431361.1_1_20:61432246-61432384:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	630.7638549804688	2	630.364579	1258.7146	-0.98029	-0.00061794	-0.82191	-0.0005181	-1.8022	-0.001136	630.3639332127672	142.05	1.4253	142.05	141.01	142.44	0					64	27	3	0	0	0	0.71361	1	54532	54532		6.2058	2.9245	1	6947500			62129	11868	45363	45718	60501	60501					0.09559572445641606
WQRSNVKLKT	10	Unmodified	_WQRSNVKLKT_					0	0	0		ENST00000431361.1_1_20:61432246-61432384:-|nuORF	ENST00000431361.1_1_20:61432246-61432384:-|nuORF	ENST00000431361.1_1_20:61432246-61432384:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	630.7638549804688	2	630.364579	1258.7146	-0.62086	-0.00039137	-0.67921	-0.00042815	-1.3001	-0.00081952	630.3639942924813	142.07	1.2205	142.1	141.26	142.48	0.030731					66	23	4	0	0	0	0.71361	1	55632	55632		6.2058	2.9245	1	7918800			62130	11868	45363	45718	60502	60502					0.09559572445641606
WQRVSQVPR	9	Unmodified	_WQRVSQVPR_					0	0	0		ENSG00000141434|ENST00000269202|MEP1B	ENSG00000141434|ENST00000269202|MEP1B	ENSG00000141434|ENST00000269202|MEP1B	MULTI-MSMS	A375_MHC_IP_R2	2	578.720703125	2	578.322714	1154.63087	-0.2493	-0.00014418	-1.5178	-0.00087778	-1.7671	-0.001022	578.3205566303203	129.81	0.45515	130.02	129.79	130.25	0.2142					15	8	3	0	0	0	0.70886	1	51033	51033		6.2058	0.42235	1	6897900			62131	5239	45364	45719	60503	60503					0.05974461068603887
WQRWQRRRQ	9	Unmodified	_WQRWQRRRQ_					0	0	0		ENSG00000167895|ENST00000318430|TMC8	ENSG00000167895|ENST00000318430|TMC8	ENSG00000167895|ENST00000318430|TMC8	MULTI-SECPEP	A375_MHC_IP_R1	1	466.9877624511719	3	467.257066	1398.74937	-0.52422	-0.00024495	-1.8625	-0.00087029	-2.3868	-0.0011152	467.2561974922011	132.72	0.3055	132.72	132.49	132.79	0					6	5	2	0	0	0	0.81688	1	51196	51196		1.0715	0.61694	1	1708700			62132	7234	45365	45720	60504	60504					0.06594253096977809
WQSDGTSV	8	Unmodified	_WQSDGTSV_					0	0	0			REV__tr|U7STI5|U7STI5_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01497PE=4SV=1	REV__tr|U7STI5|U7STI5_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01497PE=4SV=1	MSMS	A375_MHC_IP_R1	1	440.1180725097656	2	440.195782	878.377011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.841	1	54.841	54.341	55.341	0								0	0	0	0.16876	1	19598	19598		9.3474	0	1		+		62133	28489	45366	45721	60505	60505					-0.06704230821378587
WQSRRRSKRRV	11	Unmodified	_WQSRRRSKRRV_					0	0	0			REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MSMS	A375_MHC_IP_R2	2	505.6451416015625	3	505.634424	1513.88144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.475	1	91.209	90.709	91.709	0.7345								0	0	0	0.16352	1	34425	34425		0.40827	0.31342	1		+		62134	18096	45367	45722	60506	60506					0.14505858113898285
WQTKIERWLLL	11	Unmodified	_WQTKIERWLLL_					0	0	0			REV__ENST00000499900.2_1_5:177045699-177046068:+|nuORF	REV__ENST00000499900.2_1_5:177045699-177046068:+|nuORF	MSMS	A375_MHC_IP_R2	2	495.9445495605469	3	495.9574	1484.85037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.74	1	141.77	141.27	142.27	0.030731								0	0	0	0.16337	1	55427	55427		0.40827	0	1		+		62135	25486	45368	45723	60507	60507					0.12733847236472684
WQTVQPWVGW	10	Unmodified	_WQTVQPWVGW_					0	0	0			REV__ENST00000270061.11_1_19:18538736-18542208:+|nuORF	REV__ENST00000270061.11_1_19:18538736-18542208:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	429.2913513183594	3	429.548741	1285.62439	0.091056	3.9113E-05	-0.88764	-0.00038128	-0.79658	-0.00034217	429.5480885019819	22.899	0.40074	22.899	22.673	23.074	0					12	7	2	0	0	0	0.94859	1	6137	6137		0.77653	0	1	1831200	+		62136	23270	45369	45724	60508	60508					-0.006994768828008091
WQVEEAHGL	9	Unmodified	_WQVEEAHGL_					0	0	0			REV__nc|ENSG00000163534|Q96LA6-4|FCRL1	REV__nc|ENSG00000163534|Q96LA6-4|FCRL1	MULTI-SECPEP	A375_MHC_IP_R2	2	534.2033081054688	2	534.759081	1067.50361	-0.93547	-0.00050025	1.8478	0.00098814	0.91235	0.00048789	534.7597865287474	41.5	0.66028	42.274	41.895	42.555	0.77451					14	12	2	0	0	0	0.75466	1	15292	15292		4.3292	2.6766	1	1437300	+		62137	25380	45370	45725	60509	60509					-0.027443045962399992
WQVRAQTL	8	Unmodified	_WQVRAQTL_					0	0	0			REV__ENST00000456812.6_1_1:173833058-173833262:-|nuORF	REV__ENST00000456812.6_1_1:173833058-173833262:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	501.6905212402344	2	501.279983	1000.54541	-0.40715	-0.0002041	0.74279	0.00037235	0.33564	0.00016825	501.2801463001844	114.99	0.51088	115.68	115.32	115.83	0.68999					14	9	2	0	0	0	0.77717	1	43320	43320		5.2307	0	1	1128800	+		62138	24487	45371	45726	60510	60510					0.04516295882945087
WQWLKWRRLRR	11	Unmodified	_WQWLKWRRLRR_					0	0	0		ENST00000551099.5_1_12:113659271-113664634:+|nuORF	ENST00000551099.5_1_12:113659271-113664634:+|nuORF	ENST00000551099.5_1_12:113659271-113664634:+|nuORF	MSMS	A375_MHC_IP_R1	1	842.9342041015625	2	842.494585	1682.97462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.12	1	99.12	98.62	99.62	0								0	0	0	0.16353	1	36413	36413		0.35063	0.35063	1				62139	13377	45372	45727	60511	60511					0.16044782567132643
WQWSRPLDPMT	11	Unmodified	_WQWSRPLDPMT_					0	0	0			REV__ENST00000378161.5_1_1:5926431-5928130:-|nuORF	REV__ENST00000378161.5_1_1:5926431-5928130:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	709.2411499023438	2	708.840079	1415.66561	-0.70285	-0.00049821	1.6547	0.0011729	0.95181	0.00067468	708.841210483884	70.461	0.50672	71.195	70.946	71.453	0.73421					14	9	2	0	0	0	0.72728	1	26748	26748		11.495	0.6952	1	2229800	+		62140	24175	45373	45728	60512	60512					-0.025600839056096447
WQWSRPLDPMT	11	Unmodified	_WQWSRPLDPMT_					0	0	0			REV__ENST00000378161.5_1_1:5926431-5928130:-|nuORF	REV__ENST00000378161.5_1_1:5926431-5928130:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	708.840079	1415.66561	-0.49266	-0.00034922	1.775	0.0012582	1.2824	0.000909	708.8412623584001	71.004	0.41115	71.004	70.8	71.211	0	-0.095458	5.8214E-05	NaN	11.495	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1358800	+		62141	24175	45373	45728							-0.025600839056096447
WQWSRPLDPMT	11	Unmodified	_WQWSRPLDPMT_					0	0	0			REV__ENST00000378161.5_1_1:5926431-5928130:-|nuORF	REV__ENST00000378161.5_1_1:5926431-5928130:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	708.840079	1415.66561	-0.70285	-0.00049821	1.6547	0.0011729	0.95181	0.00067468	708.841210483884	70.461	0.50672	71.195	70.946	71.453	0.73421	0.095458	-0.00011244	NaN	11.495	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2229800	+		62142	24175	45373	45728							-0.025600839056096447
WQYKIVRWTMM	11	Unmodified	_WQYKIVRWTMM_					0	0	0			REV__ENST00000523916.5_1_4:185550589-185552262:-|nuORF	REV__ENST00000523916.5_1_4:185550589-185552262:-|nuORF	MSMS	A375_MHC_IP_R1	1	771.6491088867188	2	771.391425	1540.7683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.94	1	144.94	144.44	145.44	0								0	0	0	0.16353	1	55570	55570		0.35063	0.35063	1		+		62143	25748	45374	45729	60513	60513					0.019542855614645305
WQYLHCNDEKM	11	Unmodified	_WQYLHCNDEKM_					0	0	0		ENSG00000189350|ENST00000379558|TOGARAM2	ENSG00000189350|ENST00000379558|TOGARAM2	ENSG00000189350|ENST00000379558|TOGARAM2	MULTI-MSMS	A375_MHC_IP_R1	1	489.9442443847656	3	489.544562	1465.61186	-0.17527	-8.5803E-05	-0.81731	-0.00040011	-0.99258	-0.00048591	489.5443240021547	44.159	0.86921	44.159	43.757	44.626	0					29	16	3	0	0	0	0.7362	1	15420	15420		1.2148	0	1	2587700			62144	8981	45375	45730	60514	60514					-0.10232624399645829
WQYLHCNDEKM	11	Unmodified	_WQYLHCNDEKM_					0	0	0		ENSG00000189350|ENST00000379558|TOGARAM2	ENSG00000189350|ENST00000379558|TOGARAM2	ENSG00000189350|ENST00000379558|TOGARAM2	MULTI-MSMS	A375_MHC_IP_R2	2	489.9442443847656	3	489.544562	1465.61186	-0.41263	-0.000202	-0.18493	-9.0533E-05	-0.59756	-0.00029253	489.5444774336868	43.292	1.4659	44.065	43.623	45.089	0.7724					45	28	2	0	0	0	0.73378	1	16151	16151		2.4348	0	1	4547100			62145	8981	45375	45730	60515	60515					-0.10232624399645829
WRANLHKMNVE	11	Unmodified	_WRANLHKMNVE_					0	0	0			REV__nc|ENSG00000183833|Q7Z4T9-1|CFAP91	REV__nc|ENSG00000183833|Q7Z4T9-1|CFAP91	MSMS	A375_MHC_IP_R2	2	699.5944213867188	2	699.35897	1396.70339	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.376	1	77.117	76.617	77.617	0.74052								0	0	0	0.16316	1	28997	28997		2.2828	0	1		+		62146	21785	45376	45731	60516	60516					0.020904270798610014
WRARRWRWWRN	11	Unmodified	_WRARRWRWWRN_					0	0	0			REV__nc|ENSG00000171160|Q8NDC4-2|MORN4	REV__nc|ENSG00000171160|Q8NDC4-2|MORN4	MSMS	A375_MHC_IP_R2	2	864.9676513671875	2	864.963983	1727.91341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.19	1	111.92	111.42	112.42	0.73692								0	0	0	0.16354	1	41928	41928		0.30703	0.30703	1		+		62147	27355	45377	45732	60517	60517					0.07857270587714993
WRARRWRWWRN	11	Unmodified	_WRARRWRWWRN_					0	0	0			REV__nc|ENSG00000171160|Q8NDC4-2|MORN4	REV__nc|ENSG00000171160|Q8NDC4-2|MORN4	MSMS	A375_MHC_IP_R2	2	864.9647827148438	2	864.963983	1727.91341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.74	1	116.43	115.93	116.93	0.68999								0	0	0	0.1636	1	43634	43634		0	0	1		+		62148	27355	45377	45732	60518	60518					0.07857270587714993
WRATETREER	10	Unmodified	_WRATETREER_					0	0	0		ENST00000502678.1_2_5:180235646-180235703:-|nuORF;ENST00000333055.8_1_5:180220081-180235703:-|nuORF	ENST00000502678.1_2_5:180235646-180235703:-|nuORF	ENST00000502678.1_2_5:180235646-180235703:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	445.6253356933594	3	445.225097	1332.65346	0.094928	4.2264E-05	-0.16306	-7.26E-05	-0.068135	-3.0336E-05	445.2250040024167	22.999	0.4513	22.999	22.673	23.125	0					27	8	4	0	0	0	0.70312	1	6191	6191		10.899	1.1347	1	42765000			62149	10783	45378	45733	60519	60519					0.0004401567555305519
WRCFLPQGRRR	11	Unmodified	_WRCFLPQGRRR_					0	0	0		ENST00000379095.4_1_15:90818360-90818948:+|nuORF	ENST00000379095.4_1_15:90818360-90818948:+|nuORF	ENST00000379095.4_1_15:90818360-90818948:+|nuORF	MSMS	A375_MHC_IP_R2	2	737.9017944335938	2	737.901671	1473.78879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	150	1	150.01	149.51	150.51	0.0097961								0	0	0	0.16354	1	58188	58188		0.30703	0.03801	1				62150	11324	45379	45734	60520	60520					0.07084637056186693
WRCILRPVKEL	11	Unmodified	_WRCILRPVKEL_					0	0	0			REV__ENSG00000188306|ENST00000340806|LRRIQ4	REV__ENSG00000188306|ENST00000340806|LRRIQ4	MSMS	A375_MHC_IP_R2	2	471.6676330566406	3	471.611346	1411.81221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.33	1	134.47	133.97	134.97	0.13901								0	0	0	0.16305	1	52842	52842		2.8433	1.6285	1		+		62151	22083	45380	45735	60521	60521					0.12277638050136375
WRCPRQAGR	9	Unmodified	_WRCPRQAGR_					0	0	0		ENST00000565550.1_1_16:1828298-1832508:-|nuORF	ENST00000565550.1_1_16:1828298-1832508:-|nuORF	ENST00000565550.1_1_16:1828298-1832508:-|nuORF	MSMS	A375_MHC_IP_R1	1	565.1917114257812	2	565.293434	1128.57231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.23	1	100.23	99.728	100.73	0								0	0	0	0.15411	1	36836	36836		14.838	1.7958	1				62152	13546	45381	45736	60522	60522					0.013170812224643669
WRDKFFRRFRF	11	Unmodified	_WRDKFFRRFRF_					0	0	0			REV__CACNA1H|p.G1672R|1|0.36|ENSG00000196557|chr16:1215056-1215056|G/A|missense_variant	REV__CACNA1H|p.G1672R|1|0.36|ENSG00000196557|chr16:1215056-1215056|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	553.6613159179688	3	554.303904	1659.88988	-0.11673	-6.4705E-05	2.0045	0.0011111	1.8878	0.0010464	554.6391765582581	48.719	0.30442	48.719	48.526	48.831	0					11	5	3	0	0	0	1.0015	1	17178	17178		0.094841	0	1	1678400	+		62153	15552	45382	45737	60523	60523					0.08633412030508225
WRDLDRYERQG	11	Unmodified	_WRDLDRYERQG_					0	0	0			REV__ENST00000366978.5_1_1:212899780-212899888:-|nuORF	REV__ENST00000366978.5_1_1:212899780-212899888:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	748.265869140625	2	747.365838	1492.71712	-0.51928	-0.00038809	-0.77782	-0.00058131	-1.2971	-0.0009694	747.3653360087372	75.458	0.4523	75.458	75.211	75.664	0					23	8	3	0	0	0	0.73494	2	27474	27474;27497		4.1895	4.1895	1	6421700	+		62154	23946	45383	45738	60524;60525	60524					-0.009526238873831971
WRDLDRYERQG	11	Unmodified	_WRDLDRYERQG_					0	0	0			REV__ENST00000366978.5_1_1:212899780-212899888:-|nuORF	REV__ENST00000366978.5_1_1:212899780-212899888:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	747.7646484375	2	747.365838	1492.71712	-0.92638	-0.00069235	-0.6855	-0.00051232	-1.6119	-0.0012047	747.365368470251	74.762	0.60992	75.5	75.111	75.721	0.73752					26	11	3	0	0	0	0.73189	1	28343	28343		7.1017	1.8048	1	6289100	+		62155	23946	45383	45738	60526	60526					-0.009526238873831971
WRDLDRYERQG	11	Unmodified	_WRDLDRYERQG_					0	0	0			REV__ENST00000366978.5_1_1:212899780-212899888:-|nuORF	REV__ENST00000366978.5_1_1:212899780-212899888:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	747.365838	1492.71712	-0.51928	-0.00038809	-0.77782	-0.00058131	-1.2971	-0.0009694	747.3653360087372	75.458	0.4523	75.458	75.211	75.664	0	-0.020744	-6.8536E-05	NaN	7.1017	23	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6421700	+		62156	23946	45383	45738							-0.009526238873831971
WREEEERRRWY	11	Unmodified	_WREEEERRRWY_					0	0	0			REV__ENSG00000056097|ENST00000265069|ZFR	REV__ENSG00000056097|ENST00000265069|ZFR	MSMS	A375_MHC_IP_R1	1	847.9085693359375	2	847.910944	1693.80734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.32	1	138.32	137.82	138.82	0								0	0	0	0.1636	1	53210	53210		0	0	1		+		62157	16420	45384	45739	60527	60527					-0.011815745589501603
WREHGERRRKF	11	Unmodified	_WREHGERRRKF_					0	0	0		ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	MSMS	A375_MHC_IP_R2	2	519.684326171875	3	519.61503	1555.82326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.728	1	73.463	72.963	73.963	0.73541								0	0	0	0.16338	1	27602	27602		1.1098	0.6038	1				62158	5639	45385	45740	60528	60528					0.06758176468611055
WREQRNAI	8	Unmodified	_WREQRNAI_					0	0	0		ADAMTS17|p.R222Q|1|0.56|ENSG00000140470|chr15:100281353-100281353|C/T|missense_variant	ADAMTS17|p.R222Q|1|0.56|ENSG00000140470|chr15:100281353-100281353|C/T|missense_variant	ADAMTS17|p.R222Q|1|0.56|ENSG00000140470|chr15:100281353-100281353|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	536.108642578125	2	536.785964	1071.55738	-1.0344	-0.00055524	-0.73205	-0.00039295	-1.7664	-0.0009482	536.7854914833842	38.143	0.25445	38.143	37.964	38.218	0					6	4	2	0	0	0	0.93661	1	12929	12929		15.847	0	1	1133500			62159	53	45386	45741	60529	60529					0.02445912626126301
WRETVQLYEDE	11	Unmodified	_WRETVQLYEDE_					0	0	0		ENSG00000182253|ENST00000336292|SYNM;nc|ENSG00000182253|O15061-2|SYNM;nc|ENSG00000182253|O15061-3|SYNM	ENSG00000182253|ENST00000336292|SYNM	ENSG00000182253|ENST00000336292|SYNM	MULTI-MSMS	A375_MHC_IP_R1	1	734.74072265625	2	734.341163	1466.66777	-0.60336	-0.00044307	0.80156	0.00058862	0.1982	0.00014555	734.3414386516431	53.321	0.55826	53.321	52.997	53.555	0					18	10	3	0	0	0	0.56517	1	19045	19045		26.021	13.846	1	2462500			62160	8392	45387	45742	60530	60530					-0.046893766867697195
WRETVQLYEDE	11	Unmodified	_WRETVQLYEDE_					0	0	0		ENSG00000182253|ENST00000336292|SYNM;nc|ENSG00000182253|O15061-2|SYNM;nc|ENSG00000182253|O15061-3|SYNM	ENSG00000182253|ENST00000336292|SYNM	ENSG00000182253|ENST00000336292|SYNM	MULTI-SECPEP	A375_MHC_IP_R2	2	733.7849731445312	2	734.341163	1466.66777	-1.3085	-0.00096088	0.44575	0.00032733	-0.86274	-0.00063354	734.3413244431355	52.719	0.45539	53.47	53.284	53.739	0.75105					12	8	2	0	0	0	0.95449	1	19871	19871		15.739	6.3555	1	2582000			62161	8392	45387	45742	60531	60531					-0.046893766867697195
WRFGRFNYRIC	11	Unmodified	_WRFGRFNYRIC_					0	0	0			REV__ENSG00000036828|ENST00000639785|CASR	REV__ENSG00000036828|ENST00000639785|CASR	MSMS	A375_MHC_IP_R1	1	506.6665344238281	3	506.590945	1516.75101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.544	1	42.544	42.044	43.044	0								0	0	0	0.1624	1	14747	14747		6.2344	4.3069	1		+		62162	16323	45388	45743	60532	60532					0.013301260707294205
WRFRRWLIFKM	11	Unmodified	_WRFRRWLIFKM_					0	0	0			REV__nc|ENSG00000135636|O75923-3|DYSF	REV__nc|ENSG00000135636|O75923-3|DYSF	MSMS	A375_MHC_IP_R2	2	819.9635009765625	2	819.96374	1637.91293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.13	1	106.89	106.39	107.39	0.75977								0	0	0	0.1636	1	40124	40124		0	0	1		+		62163	18871	45389	45744	60533	60533					0.11948714823620321
WRGYWQRKLYR	11	Unmodified	_WRGYWQRKLYR_					0	0	0		ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	MSMS	A375_MHC_IP_R2	2	806.4349365234375	2	806.436401	1610.85825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.609	1	99.368	98.868	99.868	0.75977								0	0	0	0.16354	1	37408	37408		0.30703	0.30703	1				62164	2072	45390	45745	60534	60534					0.07725419276584944
WRHLEYYLLHC	11	Unmodified	_WRHLEYYLLHC_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-SECPEP	A375_MHC_IP_R1	1	510.9826354980469	3	511.587089	1531.73944	-0.56869	-0.00029093	-0.99742	-0.00051027	-1.5661	-0.0008012	511.58681914350035	32.154	0.66448	32.154	31.769	32.434	0					18	12	2	0	0	0	0.99883	1	10341	10341		4.7159	3.5011	1	11735000			62165	6149	45391	45746	60535	60535					-0.0051611574324397225
WRHLLFFLLIT	11	Unmodified	_WRHLLFFLLIT_					0	0	0			REV__nc|ENSG00000221957|P43632|KIR2DS4	REV__nc|ENSG00000221957|P43632|KIR2DS4	MULTI-MSMS	A375_MHC_IP_R1	1	486.68231201171875	3	486.958852	1457.85473	-0.58847	-0.00028656	0.61678	0.00030034	0.02831	1.3786E-05	486.95910049228854	138.98	1.1687	138.98	138.81	139.98	0					27	22	2	0	0	0	0.73897	1	53485	53485		0.094841	0.011491	1	2858400	+		62166	27501	45392	45747	60536	60536					0.14411356450045787
WRHLLFFLLIT	11	Unmodified	_WRHLLFFLLIT_					0	0	0			REV__nc|ENSG00000221957|P43632|KIR2DS4	REV__nc|ENSG00000221957|P43632|KIR2DS4	MULTI-MSMS	A375_MHC_IP_R2	2	487.69293212890625	3	486.958852	1457.85473	-0.40244	-0.00019597	0.61334	0.00029867	0.21089	0.0001027	486.95906680651035	138.95	1.0029	139.01	138.8	139.8	0.059906					31	19	3	0	0	0	0.73897	1	54483	54483		0.094841	0	1	1563100	+		62167	27501	45392	45747	60537	60537					0.14411356450045787
WRHLYHRY	8	Unmodified	_WRHLYHRY_					0	0	0			REV__NEB|p.V4554Gfs*42|1|0.12|ENSG00000183091|chr2:151562738-151562739|-/CC|frameshift_variant	REV__NEB|p.V4554Gfs*42|1|0.12|ENSG00000183091|chr2:151562738-151562739|-/CC|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	410.2889099121094	3	410.880825	1229.62064	-0.13084	-5.3759E-05	3.8341	0.0015753	3.7032	0.0015216	410.88262658331547	19.293	0.14727	19.293	19.221	19.368	0					6	4	2	0	0	0	0.972	1	4752	4752		10.824	2.3796	1	2842700	+		62168	21736	45393	45748	60538	60538					0.015018981340290338
WRIVRTWRKQR	11	Unmodified	_WRIVRTWRKQR_					0	0	0		ENST00000469301.1_1_3:169684298-169684427:-|nuORF	ENST00000469301.1_1_3:169684298-169684427:-|nuORF	ENST00000469301.1_1_3:169684298-169684427:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	529.381591796875	3	528.983054	1583.92733	-0.89703	-0.00047452	-1.8052	-0.00095492	-2.7022	-0.0014294	528.9818749221569	142.46	0.50381	142.46	142.18	142.69	0					13	9	2	0	0	0	1.0014	1	54707	54707		0.45452	0.45452	1	2290500			62169	12313	45394	45749	60539	60539					0.15872503296122886
WRIYYDITDVE	11	Unmodified	_WRIYYDITDVE_					0	0	0		ENSG00000137675|ENST00000260229|MMP27	ENSG00000137675|ENST00000260229|MMP27	ENSG00000137675|ENST00000260229|MMP27	MULTI-SECPEP	A375_MHC_IP_R2	2	491.14306640625	3	491.573392	1471.69835	-0.83127	-0.00040863	-3.7705	-0.0018535	-4.6018	-0.0022621	491.9053184923756	23.424	0.15067	24.054	23.928	24.079	0.63014					4	2	2	0	0	0	0.99916	1	7530	7530		2.4348	0.69251	1	1178600			62170	4903	45395	45750	60540	60540					-0.018635983017929902
WRKEKLLEWSF	11	Unmodified	_WRKEKLLEWSF_					0	0	0		ENST00000378278.6_1_10:14976506-14977537:-|nuORF	ENST00000378278.6_1_10:14976506-14977537:-|nuORF	ENST00000378278.6_1_10:14976506-14977537:-|nuORF	MSMS	A375_MHC_IP_R1	1	507.98016357421875	3	507.945271	1520.81398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.203	1	55.203	54.703	55.703	0								0	0	0	0.16305	1	19737	19737		2.8433	1.5136	1				62171	11311	45396	45751	60541	60541					0.07440970339757769
WRKILSRRG	9	Unmodified	_WRKILSRRG_					0	0	0			REV__ENST00000372201.4_1_1:45265931-45266054:+|nuORF	REV__ENST00000372201.4_1_1:45265931-45266054:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	390.93951416015625	3	391.243874	1170.70979	-0.19916	-7.7921E-05	-1.5083	-0.00059012	-1.7075	-0.00066804	391.24340045350124	30.65	0.25084	31.369	31.266	31.517	0.71857					10	4	3	0	0	0	0.79713	1	10762	10762		6.6304	3.0433	1	1787800	+		62172	24060	45397	45752	60542	60542					0.1312673309355432
WRKRPRPRLRG	11	Unmodified	_WRKRPRPRLRG_					0	0	0			REV__ENST00000215582.7_1_19:751151-756959:+|nuORF	REV__ENST00000215582.7_1_19:751151-756959:+|nuORF	MSMS	A375_MHC_IP_R1	1	739.524169921875	2	739.458002	1476.90145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.15	1	146.15	145.65	146.65	0								0	0	0	0.1636	1	55928	55928		0	0	1		+		62173	23028	45398	45753	60543	60543					0.1820765384452443
WRKRPRPRLRG	11	Unmodified	_WRKRPRPRLRG_					0	0	0			REV__ENST00000215582.7_1_19:751151-756959:+|nuORF	REV__ENST00000215582.7_1_19:751151-756959:+|nuORF	MSMS	A375_MHC_IP_R2	2	739.5228271484375	2	739.458002	1476.90145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.23	1	146.25	145.75	146.75	0.019913								0	0	0	0.1636	1	56969	56969		0	0	1		+		62174	23028	45398	45753	60544	60544					0.1820765384452443
WRKRPRPRLRG	11	Unmodified	_WRKRPRPRLRG_					0	0	0			REV__ENST00000215582.7_1_19:751151-756959:+|nuORF	REV__ENST00000215582.7_1_19:751151-756959:+|nuORF	MSMS	A375_MHC_IP_R2	2	739.5232543945312	2	739.458002	1476.90145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.25	1	146.27	145.77	146.77	0.019913								0	0	0	0.1636	1	56973	56973		0	0	1		+		62175	23028	45398	45753	60545	60545					0.1820765384452443
WRKRRWSRLSW	11	Unmodified	_WRKRRWSRLSW_					0	0	0		INMT|p.Y204Lfs*68|1|0.37|ENSG00000241644|chr7:30755670-30755685|ACATGGTGGGGAAGCG/-|frameshift_variant	INMT|p.Y204Lfs*68|1|0.37|ENSG00000241644|chr7:30755670-30755685|ACATGGTGGGGAAGCG/-|frameshift_variant	INMT|p.Y204Lfs*68|1|0.37|ENSG00000241644|chr7:30755670-30755685|ACATGGTGGGGAAGCG/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	809.3535766601562	2	808.955292	1615.89603	-0.14635	-0.00011839	-2.4017	-0.0019429	-2.5481	-0.0020613	809.4549065073896	108.74	0.505	108.74	108.51	109.02	0					19	9	3	0	0	0	0.73809	1	39899	39899		1.1933	0.23107	1	4385500			62176	14166	45399	45754	60546	60546					0.11271930262046226
WRKRVRRA	8	Unmodified	_WRKRVRRA_					0	0	0			REV__ENSG00000148411|ENST00000277554|NACC2	REV__ENSG00000148411|ENST00000277554|NACC2	MULTI-MSMS	A375_MHC_IP_R1	1	1128.099853515625	1	1127.70209	1126.69481	-0.29901	-0.0003372	-1.3202	-0.0014888	-1.6192	-0.001826	1127.7003331945457	145.71	0.076309	145.71	145.66	145.74	0					8	3	3	0	0	0	0.77842	1	55822	55822		0.69038	0.16561	1	215410	+		62177	19631	45400	45755	60547	60547					0.13653286016210586
WRKRVRRA	8	Unmodified	_WRKRVRRA_					0	0	0			REV__ENSG00000148411|ENST00000277554|NACC2	REV__ENSG00000148411|ENST00000277554|NACC2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	1127.70209	1126.69481	-0.29901	-0.0003372	-1.3202	-0.0014888	-1.6192	-0.001826	1127.7003331945457	145.71	0.076309	145.71	145.66	145.74	0	-0.015057	-0.00092807	NaN	0.69038	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215410	+		62178	19631	45400	45755							0.13653286016210586
WRKRVRRA	8	Unmodified	_WRKRVRRA_					0	0	0			REV__ENSG00000148411|ENST00000277554|NACC2	REV__ENSG00000148411|ENST00000277554|NACC2	MULTI-MATCH	A375_MHC_IP_R2	2		1	1127.70209	1126.69481	0.31627	0.00035666	-0.24297	-0.000274	0.073297	8.2657E-05	1128.704891357238	145.72	0.090042	145.74	145.71	145.8	0.021408	0.015057	0.0002867	NaN	0.69038	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143260	+		62179	19631	45400	45755							0.13653286016210586
WRKRWRWRRYA	11	Unmodified	_WRKRWRWRRYA_					0	0	0		ENST00000507209.5_1_4:187125362-187125452:+|nuORF	ENST00000507209.5_1_4:187125362-187125452:+|nuORF	ENST00000507209.5_1_4:187125362-187125452:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	573.6788330078125	3	573.990431	1718.94946	-0.28909	-0.00016594	0.75848	0.00043536	0.46939	0.00026942	574.3243868638066	107.42	0.25444	108.17	107.95	108.2	0.75436					6	4	2	0	0	0	1.0015	1	40510	40510		0	0	1	746420			62180	12862	45401	45756	60548	60548					0.11874727764575255
WRKWEWREAR	10	Unmodified	_WRKWEWREAR_					0	0	0		ENST00000381989.3_1_13:25072288-25074457:-|nuORF	ENST00000381989.3_1_13:25072288-25074457:-|nuORF	ENST00000381989.3_1_13:25072288-25074457:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	752.2922973632812	2	751.891826	1501.7691	-0.3558	-0.00026752	0.49032	0.00036867	0.13452	0.00010114	751.89222907646	78.979	0.50912	78.979	78.756	79.265	0					15	9	2	0	0	0	0.72658	1	28832	28832		0.40072	0.40072	1	6996800			62181	11381	45402	45757	60549	60549					0.03828584317079731
WRLFFFFEFWQ	11	Unmodified	_WRLFFFFEFWQ_					0	0	0			REV__ENST00000324348.8_2_17:7818314-7818512:-|nuORF	REV__ENST00000324348.8_2_17:7818314-7818512:-|nuORF	MSMS	A375_MHC_IP_R1	1	551.6380615234375	3	551.606478	1651.79761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.281	1	28.281	27.781	28.781	0								0	0	0	0.16354	1	8703	8703		0.08335	0	1		+		62182	23589	45403	45758	60550	60550					-0.0022211082637113577
WRLFFFFEFWQ	11	Unmodified	_WRLFFFFEFWQ_					0	0	0			REV__ENST00000324348.8_2_17:7818314-7818512:-|nuORF	REV__ENST00000324348.8_2_17:7818314-7818512:-|nuORF	MSMS	A375_MHC_IP_R1	1	826.7417602539062	2	826.906079	1651.79761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.01	1	112.01	111.51	112.51	0								0	0	0	0.16354	1	41058	41058		0.30703	0.30703	1		+		62183	23589	45403	45758	60551	60551					-0.0022211082637113577
WRLFFFFEFWQ	11	Unmodified	_WRLFFFFEFWQ_					0	0	0			REV__ENST00000324348.8_2_17:7818314-7818512:-|nuORF	REV__ENST00000324348.8_2_17:7818314-7818512:-|nuORF	MSMS	A375_MHC_IP_R2	2	551.63818359375	3	551.606478	1651.79761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.717	1	28.395	27.895	28.895	0.67857								0	0	0	0.16354	1	9508	9508		0.08335	0	1		+		62184	23589	45403	45758	60552	60552					-0.0022211082637113577
WRLIGPVRI	9	Unmodified	_WRLIGPVRI_					0	0	0			REV__ENSG00000101846|ENST00000674429|STS	REV__ENSG00000101846|ENST00000674429|STS	MULTI-MSMS	A375_MHC_IP_R1	1	370.5992126464844	3	370.569588	1108.68693	-0.047681	-1.7669E-05	1.0134	0.00037552	0.96567	0.00035785	370.9046506194751	29.677	2.8751	29.677	29.098	31.973	0					78	56	2	0	0	0	0.72985	2	9469	9469;9856		2.4985	1.427	1	154390000	+		62185	17187	45404	45759	60553;60554	60553					0.13693713976090294
WRLLGMPARRR	11	Unmodified	_WRLLGMPARRR_					0	0	0		CHRNA10|p.V204L|1|0.43|ENSG00000129749|chr11:3667517-3667517|C/A|missense_variant	CHRNA10|p.V204L|1|0.43|ENSG00000129749|chr11:3667517-3667517|C/A|missense_variant	CHRNA10|p.V204L|1|0.43|ENSG00000129749|chr11:3667517-3667517|C/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	472.0022888183594	3	471.278702	1410.81428	-0.51015	-0.00024042	-1.0818	-0.00050981	-1.5919	-0.00075023	471.2792080722873	133.47	0.55638	133.64	133.35	133.91	0.16489					24	10	3	0	0	0	1.0014	1	52578	52578		0.50596	0	1	2338600			62186	516	45405	45760	60555	60555					0.12530111578575998
WRLLQFGKSLR	11	Unmodified	_WRLLQFGKSLR_					0	0	0			REV__ENST00000357429.10_1_7:1036905-1037229:-|nuORF	REV__ENST00000357429.10_1_7:1036905-1037229:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	468.3447265625	3	468.613856	1402.81974	-0.42958	-0.00020131	-1.0646	-0.00049887	-1.4941	-0.00070017	468.61323340098676	143.1	0.45409	143.13	142.84	143.29	0.030731					11	8	2	0	0	0	1.0014	1	55890	55890		0.50596	0.051438	1	993020	+		62187	23842	45406	45761	60556	60556					0.13444113642071898
WRLPLLILLL	10	Unmodified	_WRLPLLILLL_					0	0	0		ENSG00000100385|ENST00000216223|IL2RB	ENSG00000100385|ENST00000216223|IL2RB	ENSG00000100385|ENST00000216223|IL2RB	MSMS	A375_MHC_IP_R1	1	417.4136657714844	3	417.284677	1248.8322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.66	1	12.66	12.16	13.16	0								0	0	0	0.15642	1	2901	2901		0	0	1				62188	2171	45407	45762	60557	60557					0.2177375705243776
WRLPLLILLL	10	Unmodified	_WRLPLLILLL_					0	0	0		ENSG00000100385|ENST00000216223|IL2RB	ENSG00000100385|ENST00000216223|IL2RB	ENSG00000100385|ENST00000216223|IL2RB	MSMS	A375_MHC_IP_R2	2	417.4135437011719	3	417.284677	1248.8322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.442	1	13.989	13.489	14.489	0.54677								0	0	0	0.15642	1	4120	4120		0	0	1				62189	2171	45407	45762	60558	60558					0.2177375705243776
WRLTQRRERRK	11	Unmodified	_WRLTQRRERRK_					0	0	0			REV__ENST00000367137.3_1_1:205780005-205782040:-|nuORF	REV__ENST00000367137.3_1_1:205780005-205782040:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	529.3810424804688	3	528.981713	1583.92331	-0.36204	-0.00019151	-0.30771	-0.00016277	-0.66975	-0.00035429	528.9814111620863	142.51	0.51064	142.54	142.18	142.69	0.030731					20	9	4	0	0	0	1.0015	1	55677	55677		0.094841	0	1	3228200	+		62190	23954	45408	45763	60559	60559					0.15470413802404437
WRNKVWRHRLH	11	Unmodified	_WRNKVWRHRLH_					0	0	0		ENST00000583079.1_1_17:18023566-18025792:+|nuORF	ENST00000583079.1_1_17:18023566-18025792:+|nuORF	ENST00000583079.1_1_17:18023566-18025792:+|nuORF	MSMS	A375_MHC_IP_R1	1	529.7249755859375	3	529.967515	1586.88072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.53	1	131.53	131.03	132.03	0								0	0	0	0.16358	1	50710	50710		0.094841	0	1				62191	13694	45409	45764	60560	60560					0.11075063464863888
WRNKVWRHRLH	11	Unmodified	_WRNKVWRHRLH_					0	0	0		ENST00000583079.1_1_17:18023566-18025792:+|nuORF	ENST00000583079.1_1_17:18023566-18025792:+|nuORF	ENST00000583079.1_1_17:18023566-18025792:+|nuORF	MSMS	A375_MHC_IP_R2	2	529.9605712890625	3	529.967515	1586.88072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.03	1	135.17	134.67	135.67	0.13901								0	0	0	0.16358	1	53106	53106		0.094841	0	1				62192	13694	45409	45764	60561	60561					0.11075063464863888
WRNRQKNKRR	10	Unmodified	_WRNRQKNKRR_					0	0	0		ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-MSMS	A375_MHC_IP_R1	1	482.01751708984375	3	481.283503	1440.82868	-0.64097	-0.00030849	0.33968	0.00016348	-0.30129	-0.000145	481.28362349651695	133.48	5.0027	133.48	133.1	138.1	0					347	97	6	0	0	0	0.72658	1	52364	52364		0.69767	0.60282	1	602190000			62193	4386	45410	45765	60562	60562					0.12589900051079894
WRNRQKNKRR	10	Unmodified	_WRNRQKNKRR_					0	0	0		ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-MSMS	A375_MHC_IP_R1	1	722.3428955078125	2	721.421617	1440.82868	-0.92521	-0.00066747	0.6408	0.00046228	-0.28441	-0.00020518	721.421515716601	148.73	1.9875	148.73	147.73	149.72	0					100	52	3	0	0	0	0.72416	3	56721	56654;56721;56871		1.4819	1.1313	1	651190			62194	4386	45410	45765	60563;60564;60565	60564					0.12589900051079894
WRNRQKNKRR	10	Unmodified	_WRNRQKNKRR_					0	0	0		ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-MSMS	A375_MHC_IP_R2	2	722.3433837890625	2	721.421617	1440.82868	-0.58703	-0.0004235	0.28891	0.00020842	-0.29812	-0.00021507	721.4212677288326	148.71	1.7975	148.73	147.7	149.49	0.018692					109	53	4	0	0	0	0.72416	3	57697	57616;57697;57822		1.4819	1.1313	1	510730			62195	4386	45410	45765	60566;60567;60568	60567					0.12589900051079894
WRNTIDYVL	9	Unmodified	_WRNTIDYVL_					0	0	0			REV__ENSG00000197562|ENST00000248139|RAB40C	REV__ENSG00000197562|ENST00000248139|RAB40C	MULTI-SECPEP	A375_MHC_IP_R2	2	394.2763977050781	3	393.876746	1178.60841	-0.56511	-0.00022258	0.41937	0.00016518	-0.14574	-5.7405E-05	393.8768483754149	59.509	0.60543	60.256	59.845	60.45	0.74714					17	11	2	0	0	0	0.80101	1	22558	22558		2.7352	1.1429	1	1233700	+		62196	22298	45411	45766	60569	60569					0.026248168803249428
WRNWRWWQERI	11	Unmodified	_WRNWRWWQERI_					0	0	0			REV__ENST00000510393.5_1_1:16083148-16084686:+|nuORF	REV__ENST00000510393.5_1_1:16083148-16084686:+|nuORF	MSMS	A375_MHC_IP_R2	2	572.6533203125	3	572.627047	1714.85931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.226	1	84.966	84.466	85.466	0.73962								0	0	0	0.16358	1	32015	32015		0.094841	0.094841	1		+		62197	25601	45412	45767	60570	60570					0.030476336454967168
WRNYRDEYRDR	11	Unmodified	_WRNYRDEYRDR_					0	0	0			REV__ENST00000416702.1_1_10:21318746-21318953:+|nuORF	REV__ENST00000416702.1_1_10:21318746-21318953:+|nuORF	MSMS	A375_MHC_IP_R1	1	814.9357299804688	2	814.887469	1627.76039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.78	1	123.78	123.28	124.28	0								0	0	0	0.1636	1	46330	46330		0	0	1		+		62198	24537	45413	45768	60571	60571					-0.028384341100718302
WRPPQGPVSF	10	Unmodified	_WRPPQGPVSF_					0	0	0		ENSG00000181588|ENST00000402693|MEX3D;nc|ENSG00000181588|Q86XN8-2|MEX3D;nc|ENSG00000181588|Q86XN8-3|MEX3D	ENSG00000181588|ENST00000402693|MEX3D	ENSG00000181588|ENST00000402693|MEX3D	MULTI-SECPEP	A375_MHC_IP_R1	1	586.2055053710938	2	585.806365	1169.59818	0.044621	2.6139E-05	-0.60354	-0.00035356	-0.55892	-0.00032742	585.8059997088378	69.077	0.30421	69.077	68.92	69.224	0					9	5	2	0	0	0	0.42954	1	25091	25091		49.933	7.9774	1	1666700			62199	8352	45414	45769	60572	60572					0.020162539457487583
WRPRRQIWRRR	11	Unmodified	_WRPRRQIWRRR_					0	0	0			REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	MSMS	A375_MHC_IP_R1	1	833.2914428710938	2	833.492908	1664.97126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.88	1	122.88	122.38	123.38	0								0	0	0	0.1636	1	45829	45829		0	0	1		+		62200	23161	45415	45770	60573	60573					0.16537532513120823
WRPRRQIWRRR	11	Unmodified	_WRPRRQIWRRR_					0	0	0			REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	MSMS	A375_MHC_IP_R1	1	555.6719360351562	3	555.997697	1664.97126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.74	1	131.74	131.24	132.24	0								0	0	0	0.1636	1	50793	50793		0	0	1		+		62201	23161	45415	45770	60574	60574					0.16537532513120823
WRPRRQIWRRR	11	Unmodified	_WRPRRQIWRRR_					0	0	0			REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	556.23486328125	3	555.997697	1664.97126	-0.90978	-0.00050584	-0.50082	-0.00027846	-1.4106	-0.0007843	555.9971904449479	143.19	0.69989	143.19	142.84	143.54	0					35	13	4	0	0	0	1.0015	1	54837	54837		0	0	1	6789500	+		62202	23161	45415	45770	60575	60575					0.16537532513120823
WRPRRQIWRRR	11	Unmodified	_WRPRRQIWRRR_					0	0	0			REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	833.8911743164062	2	833.492908	1664.97126	-0.56523	-0.00047112	-0.75198	-0.00062677	-1.3172	-0.0010979	833.4919864308681	143.22	0.50528	143.25	142.99	143.49	0.026276					23	9	4	0	0	0	0.73934	1	55948	55948		0	0	1	2023400	+		62203	23161	45415	45770	60576	60576					0.16537532513120823
WRPRRQIWRRR	11	Unmodified	_WRPRRQIWRRR_					0	0	0			REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	556.3966064453125	3	555.997697	1664.97126	-0.58277	-0.00032402	-0.54822	-0.00030481	-1.131	-0.00062883	556.3318570880579	143.16	0.65274	143.19	142.94	143.59	0.030731					32	12	4	0	0	0	1.0015	1	55932	55932		0	0	1	7045800	+		62204	23161	45415	45770	60577	60577					0.16537532513120823
WRPRRQIWRRR	11	Unmodified	_WRPRRQIWRRR_					0	0	0			REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	833.492908	1664.97126	-0.71144	-0.00059298	-1.0007	-0.00083409	-1.7122	-0.0014271	833.4919678748248	143.22	0.50305	143.22	142.89	143.39	0	-0.012666	-0.00014613	NaN	0	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2487900	+		62205	23161	45415	45770							0.16537532513120823
WRPRRQIWRRR	11	Unmodified	_WRPRRQIWRRR_					0	0	0			REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	833.492908	1664.97126	-0.56523	-0.00047112	-0.75198	-0.00062677	-1.3172	-0.0010979	833.4919864308681	143.22	0.50528	143.25	142.99	143.49	0.026276	0.012666	0.00026852	NaN	0	23	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2023400	+		62206	23161	45415	45770							0.16537532513120823
WRQRIRKWRQM	11	Unmodified	_WRQRIRKWRQM_					0	0	0			REV__ENST00000595455.1_1_19:36244761-36245372:+|nuORF	REV__ENST00000595455.1_1_19:36244761-36245372:+|nuORF	MSMS	A375_MHC_IP_R2	2	822.8818969726562	2	822.462427	1642.9103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.93	0.99999	128.19	127.69	128.69	0.26592								0	0	0	0.1636	1	50220	50220		0	0	1		+		62207	22932	45416	45771	60578	60578					0.11456259418673653
WRQTLHMRRMW	11	Unmodified	_WRQTLHMRRMW_					0	0	0		ENST00000439586.1_1_Y:7937590-7937806:-|nuORF	ENST00000439586.1_1_Y:7937590-7937806:-|nuORF	ENST00000439586.1_1_Y:7937590-7937806:-|nuORF	MSMS	A375_MHC_IP_R1	1	800.8168334960938	2	800.908639	1599.80272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.053	1	96.053	95.553	96.553	0								0	0	0	0.16316	1	35303	35303		2.2828	0.95324	1				62208	11963	45417	45772	60579	60579					0.026815464929541122
WRQWTKMRQDF	11	Unmodified	_WRQWTKMRQDF_					0	0	0			REV__ENST00000560260.5_1_15:64422114-64427054:+|nuORF	REV__ENST00000560260.5_1_15:64422114-64427054:+|nuORF	MSMS	A375_MHC_IP_R1	1	791.3304443359375	2	791.390802	1580.76705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.57	1	117.57	117.07	118.07	0								0	0	0	0.16337	1	43198	43198		1.1933	0.12188	1		+		62209	16296	45418	45773	60580	60580					-0.0001021248306187772
WRRCIYSTF	9	Unmodified	_WRRCIYSTF_					0	0	0		ENST00000374270.7_1_9:114840952-114842376:-|nuORF	ENST00000374270.7_1_9:114840952-114842376:-|nuORF	ENST00000374270.7_1_9:114840952-114842376:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	410.6551208496094	3	411.206209	1230.5968	0.029804	1.2256E-05	3.2363	0.0013308	3.2661	0.0013431	411.20844188210816	75.976	0.20264	76.716	76.589	76.792	0.74052					5	3	2	0	0	0	0.75466	1	28807	28807		4.897	0	1	650460			62210	11249	45419	45774	60581	60581					-0.009277034146634833
WRREMVYQRQV	11	Unmodified	_WRREMVYQRQV_					0	0	0		ENST00000464589.1_1_21:28212595-28212700:-|nuORF	ENST00000464589.1_1_21:28212595-28212700:-|nuORF	ENST00000464589.1_1_21:28212595-28212700:-|nuORF	MSMS	A375_MHC_IP_R1	1	517.6310424804688	3	517.605143	1549.7936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.043	1	24.043	23.543	24.543	0								0	0	0	0.16309	1	6727	6727		2.6312	0.70373	1				62211	12229	45420	45775	60582	60582					0.04069476408290029
WRRHRGLVKRK	11	Unmodified	_WRRHRGLVKRK_					0	0	0		ENST00000409887.3_1_17:16350239-16351253:-|nuORF;ENSG00000181350|ENST00000470794|LRRC75A	ENST00000409887.3_1_17:16350239-16351253:-|nuORF	ENST00000409887.3_1_17:16350239-16351253:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	497.87451171875	3	497.979644	1490.9171	-0.3231	-0.0001609	-0.28174	-0.0001403	-0.60484	-0.0003012	497.9793843258965	148.97	2.6683	148.99	147.34	150.01	0.018707					424	130	5	0	0	0	0.73934	1	57703	57703		0	0	1	4394800			62212	8343	45421	45776	60583	60583					0.1912794036154537
WRRKQLRAHLR	11	Unmodified	_WRRKQLRAHLR_					0	0	0		nc|ENSG00000214022|Q9BWE0|REPIN1;ENSG00000214022|ENST00000489432|REPIN1	nc|ENSG00000214022|Q9BWE0|REPIN1	nc|ENSG00000214022|Q9BWE0|REPIN1	MULTI-SECPEP	A375_MHC_IP_R1	1	506.7088317871094	3	507.311282	1518.91202	-0.72912	-0.00036989	-1.9889	-0.001009	-2.7181	-0.0013789	507.31020233012197	139.41	0.30032	139.41	139.17	139.47	0					10	5	3	0	0	0	1.0015	1	53564	53564		0.094841	0.094841	1	630550			62213	9599	45422	45777	60584	60584					0.17331636498965963
WRRKQLRAHLR	11	Unmodified	_WRRKQLRAHLR_					0	0	0		nc|ENSG00000214022|Q9BWE0|REPIN1;ENSG00000214022|ENST00000489432|REPIN1	nc|ENSG00000214022|Q9BWE0|REPIN1	nc|ENSG00000214022|Q9BWE0|REPIN1	MULTI-MATCH	A375_MHC_IP_R2	2		3	507.311282	1518.91202	-0.54841	-0.00027821	-2.3768	-0.0012058	-2.9252	-0.001484	507.6444925324254	139.44	0.29936	139.49	139.3	139.6	0.059906	0.042914	-0.000325	NaN	0.094841	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	399050			62214	9599	45422	45777							0.17331636498965963
WRRKRRWKRDY	11	Unmodified	_WRRKRRWKRDY_					0	0	0			REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF	REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF	MSMS	A375_MHC_IP_R2	2	853.4884643554688	2	853.484748	1704.95494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.04	1	106.8	106.3	107.3	0.75977								0	0	0	0.1636	1	40090	40090		0	0	1		+		62215	26065	45423	45778	60585	60585					0.13066406556390575
WRRKRRWKRDY	11	Unmodified	_WRRKRRWKRDY_					0	0	0			REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF	REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF	MSMS	A375_MHC_IP_R2	2	853.13525390625	2	853.484748	1704.95494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.19	1	110.93	110.43	111.43	0.73692								0	0	0	0.1636	1	41572	41572		0	0	1		+		62216	26065	45423	45778	60586	60586					0.13066406556390575
WRRKRRWRGLW	11	Unmodified	_WRRKRRWRGLW_					0	0	0			REV__ENSG00000283093|ENST00000634648|CENPVL2	REV__ENSG00000283093|ENST00000634648|CENPVL2	MSMS	A375_MHC_IP_R1	1	828.4070434570312	2	828.484551	1654.95455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.954	1	94.954	94.454	95.454	0								0	0	0	0.16354	1	34900	34900		0.30703	0.30703	1		+		62217	22701	45424	45779	60587	60587					0.15327031627180077
WRRKWAYRKLK	11	Unmodified	_WRRKWAYRKLK_					0	0	0			REV__ENSG00000109458|ENST00000262994|GAB1	REV__ENSG00000109458|ENST00000262994|GAB1	MULTI-MSMS	A375_MHC_IP_R1	1	531.052978515625	3	530.987916	1589.94192	-0.89821	-0.00047694	-2.7412	-0.0014556	-3.6395	-0.0019325	530.9863183415251	137.18	1.1817	137.18	136.41	137.59	0					32	22	2	0	0	0	0.73897	1	52824	52824		0.094841	0	1	2374400	+		62218	17579	45425	45780	60588	60588					0.1705457544426281
WRRKWFCRKWT	11	Unmodified	_WRRKWFCRKWT_					0	0	0			REV__nc|ENSG00000162062|Q7L2K0-3|TEDC2	REV__nc|ENSG00000162062|Q7L2K0-3|TEDC2	MULTI-SECPEP	A375_MHC_IP_R2	2	551.7473754882812	3	551.629623	1651.86704	-0.5899	-0.0003254	2.4534	0.0013534	1.8635	0.0010279	551.6312578949688	149.93	0.049133	149.94	149.9	149.95	0.01825					5	4	2	0	0	0	1.0015	1	58160	58160		0	0	1	26249	+		62219	26234	45426	45781	60589	60589					0.06718069641397051
WRRLRKQNIWR	11	Unmodified	_WRRLRKQNIWR_					0	0	0		ENSG00000183617|ENST00000330133|MRPL54	ENSG00000183617|ENST00000330133|MRPL54	ENSG00000183617|ENST00000330133|MRPL54	MULTI-SECPEP	A375_MHC_IP_R1	1	404.14215087890625	4	403.741834	1610.93823	-0.40409	-0.00016315	1.6974	0.00068532	1.2933	0.00052217	403.7422840339676	77.553	0.6089	77.553	77.286	77.895	0					15	11	2	0	0	0	1.0015	1	28321	28321		0.094841	0	1	3009600			62220	8510	45427	45782	60590	60590					0.15719905670448497
WRRPALTLR	9	Unmodified	_WRRPALTLR_					0	0	0			REV__ENST00000512382.1_7:296353-297053:+|nuORF	REV__ENST00000512382.1_7:296353-297053:+|nuORF	MSMS	A375_MHC_IP_R1	1	584.75537109375	2	584.856724	1167.69889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.71	1	128.71	128.21	129.21	0								0	0	0	0.15486	1	49453	49453		4.756	0.81161	1		+		62221	25624	45428	45783	60591	60591					0.12175330719264821
WRRRGRLLLRR	11	Unmodified	_WRRRGRLLLRR_					0	0	0		ENST00000373433.8_1_20:36662140-36662245:+|nuORF	ENST00000373433.8_1_20:36662140-36662245:+|nuORF	ENST00000373433.8_1_20:36662140-36662245:+|nuORF	MSMS	A375_MHC_IP_R2	2	769.4953002929688	2	769.492376	1536.9702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.38	1	119.91	119.41	120.41	0.5321								0	0	0	0.1636	1	45475	45475		0	0	1				62222	11230	45429	45784	60592	60592					0.22319318144241151
WRRRHKVCWRL	11	Unmodified	_WRRRHKVCWRL_					0	0	0		ENST00000304877.17_2_6:125475035-125541268:+|nuORF	ENST00000304877.17_2_6:125475035-125541268:+|nuORF	ENST00000304877.17_2_6:125475035-125541268:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	533.0364379882812	3	532.637	1594.88917	-0.91269	-0.00048613	0.10784	5.7439E-05	-0.80485	-0.00042869	532.636885494414	134.91	1.3206	134.91	134.52	135.84	0					73	25	4	0	0	0	0.73924	3	52118	51892;51919;52118		0.094841	0.094841	1	24410000			62223	10563	45430	45785	60593;60594;60595	60595					0.1155229410985612
WRRRHKVCWRL	11	Unmodified	_WRRRHKVCWRL_					0	0	0		ENST00000304877.17_2_6:125475035-125541268:+|nuORF	ENST00000304877.17_2_6:125475035-125541268:+|nuORF	ENST00000304877.17_2_6:125475035-125541268:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	798.8517456054688	2	798.451862	1594.88917	-0.70228	-0.00056074	0.59594	0.00047583	-0.10634	-8.4908E-05	798.4520550868543	134.92	1.0146	134.92	134.42	135.44	0					39	19	3	0	0	0	0.73934	1	52038	52038		0	0	1	4789600			62224	10563	45430	45785	60596	60596					0.1155229410985612
WRRRHKVCWRL	11	Unmodified	_WRRRHKVCWRL_					0	0	0		ENST00000304877.17_2_6:125475035-125541268:+|nuORF	ENST00000304877.17_2_6:125475035-125541268:+|nuORF	ENST00000304877.17_2_6:125475035-125541268:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	532.2164306640625	3	532.637	1594.88917	-0.89806	-0.00047834	-0.12638	-6.7313E-05	-1.0244	-0.00054565	532.6368193859572	134.19	0.86111	134.19	133.66	134.52	0					32	16	2	0	0	0	1.0015	1	51654	51654		0.094841	0.094841	1	10470000			62225	10563	45430	45785	60597	60597					0.1155229410985612
WRRRHKVCWRL	11	Unmodified	_WRRRHKVCWRL_					0	0	0		ENST00000304877.17_2_6:125475035-125541268:+|nuORF	ENST00000304877.17_2_6:125475035-125541268:+|nuORF	ENST00000304877.17_2_6:125475035-125541268:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	533.036865234375	3	532.637	1594.88917	-0.61454	-0.00032733	-0.21521	-0.00011463	-0.82975	-0.00044196	532.6368496657227	134.12	1.0194	134.29	133.65	134.67	0.16487					48	19	3	0	0	0	0.73924	2	52626	52626;52854		0.094841	0.094841	1	15055000			62226	10563	45430	45785	60598;60599	60598					0.1155229410985612
WRRRHKVCWRL	11	Unmodified	_WRRRHKVCWRL_					0	0	0		ENST00000304877.17_2_6:125475035-125541268:+|nuORF	ENST00000304877.17_2_6:125475035-125541268:+|nuORF	ENST00000304877.17_2_6:125475035-125541268:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	798.8514404296875	2	798.451862	1594.88917	-0.81236	-0.00064863	0.60075	0.00047967	-0.21161	-0.00016896	798.953616599643	134.87	0.91322	135	134.44	135.36	0.13901					36	17	3	0	0	0	0.73934	1	53020	53020		0	0	1	4752500			62227	10563	45430	45785	60600	60600					0.1155229410985612
WRRRHKVCWRL	11	Unmodified	_WRRRHKVCWRL_					0	0	0		ENST00000304877.17_2_6:125475035-125541268:+|nuORF	ENST00000304877.17_2_6:125475035-125541268:+|nuORF	ENST00000304877.17_2_6:125475035-125541268:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	533.1880493164062	3	532.637	1594.88917	-0.5908	-0.00031468	0.069882	3.7222E-05	-0.52091	-0.00027746	532.6368717874698	134.85	1.3209	134.98	134.6	135.92	0.13901					62	25	3	0	0	0	1.0015	1	53135	53135		0	0	1	23490000			62228	10563	45430	45785	60601	60601					0.1155229410985612
WRRRHKVCWRL	11	Unmodified	_WRRRHKVCWRL_					0	0	0		ENST00000304877.17_2_6:125475035-125541268:+|nuORF	ENST00000304877.17_2_6:125475035-125541268:+|nuORF	ENST00000304877.17_2_6:125475035-125541268:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	532.637	1594.88917	-0.91269	-0.00048613	0.10784	5.7439E-05	-0.80485	-0.00042869	532.636885494414	134.91	1.3206	134.91	134.52	135.84	0	-0.039011	3.1452E-05	NaN	0.094841	73	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24410000			62229	10563	45430	45785							0.1155229410985612
WRRRKAARARA	11	Unmodified	_WRRRKAARARA_					0	0	0		ENST00000420069.3_3_11:67195969-67200219:+|nuORF	ENST00000420069.3_3_11:67195969-67200219:+|nuORF	ENST00000420069.3_3_11:67195969-67200219:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	467.3421936035156	3	466.620227	1396.83885	-0.613	-0.00028604	-0.29914	-0.00013959	-0.91214	-0.00042562	466.62012127323555	141.04	0.25934	141.04	140.91	141.17	0					6	4	2	0	0	0	1.0014	1	54158	54158		0.50596	0.50596	1	899070			62230	11722	45431	45786	60602	60602					0.15630507776359082
WRRRKRQGHPL	11	Unmodified	_WRRRKRQGHPL_					0	0	0		ENST00000580483.5_1_18:10525983-10526091:+|nuORF	ENST00000580483.5_1_18:10525983-10526091:+|nuORF	ENST00000580483.5_1_18:10525983-10526091:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	745.83935546875	2	745.439809	1488.86507	-0.87931	-0.00065547	0.14005	0.0001044	-0.73926	-0.00055107	745.4397188836658	143.16	0.70612	143.16	142.69	143.39	0					48	13	5	0	0	0	0.73934	1	54830	54830		0	0	1	19258000			62231	13673	45432	45787	60603	60603					0.14018776947841616
WRRRKRQGHPL	11	Unmodified	_WRRRKRQGHPL_					0	0	0		ENST00000580483.5_1_18:10525983-10526091:+|nuORF	ENST00000580483.5_1_18:10525983-10526091:+|nuORF	ENST00000580483.5_1_18:10525983-10526091:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	745.8389282226562	2	745.439809	1488.86507	-0.6669	-0.00049713	0.15688	0.00011694	-0.51002	-0.00038019	745.4396984773732	143.18	0.85645	143.21	142.74	143.59	0.030731					53	16	5	0	0	0	0.73925	1	55871	55871		0.30703	0.30703	1	19076000			62232	13673	45432	45787	60604	60604					0.14018776947841616
WRRRLLLR	8	Unmodified	_WRRRLLLR_					0	0	0		ENST00000431489.5_1_2:62933068-62933182:+|nuORF	ENST00000431489.5_1_2:62933068-62933182:+|nuORF	ENST00000431489.5_1_2:62933068-62933182:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	390.9395751953125	3	390.256114	1167.74651	0.095218	3.716E-05	-1.7185	-0.00067066	-1.6233	-0.0006335	390.58977767964984	31.256	0.30494	31.256	31.109	31.414	0					8	5	2	0	0	0	0.972	1	10037	10037		6.2058	0	1	1018500			62233	11871	45433	45788	60605	60605					0.16935029710111849
WRRRMEPL	8	Unmodified	_WRRRMEPL_					0	0	0		nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-7|DYSF;ENSG00000135636|ENST00000410020|DYSF;nc|ENSG00000135636|O75923-15|DYSF	nc|ENSG00000135636|O75923-3|DYSF	nc|ENSG00000135636|O75923-3|DYSF	MSMS	A375_MHC_IP_R2	2	381.8088073730469	3	381.878315	1142.61312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.277	1	18.88	18.38	19.38	0.60308								0	0	0	0.16876	1	5427	5427		0.40072	0.1317	1				62234	4700	45434	45789	60606	60606					0.0475142254210823
WRRRMWKLPVL	11	Unmodified	_WRRRMWKLPVL_					0	0	0		ENST00000515488.1_1_5:176409525-176449473:-|nuORF;ENST00000511320.5_1_5:176409525-176433662:-|nuORF	ENST00000515488.1_1_5:176409525-176449473:-|nuORF	ENST00000515488.1_1_5:176409525-176449473:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	771.355224609375	2	770.955915	1539.89728	-0.74329	-0.00057305	0.14865	0.0001146	-0.59465	-0.00045845	770.9557890841502	142.47	0.45938	142.51	142.18	142.64	0.030731					19	8	3	0	0	0	0.73934	1	55651	55651		0	0	1	3026500			62235	12906	45435	45790	60607	60607					0.14892428306620786
WRRRPRTRR	9	Unmodified	_WRRRPRTRR_					0	0	0		ENST00000586866.5_2_19:1077961-1079783:+|nuORF	ENST00000586866.5_2_19:1077961-1079783:+|nuORF	ENST00000586866.5_2_19:1077961-1079783:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	447.4992370605469	3	447.272939	1338.79699	-0.40035	-0.00017907	0.21112	9.4429E-05	-0.18923	-8.4637E-05	447.2728996135183	137.1	2.4479	137.1	136.82	139.27	0					107	47	6	0	0	0	0.77827	1	53043	53043		0	0	1	33967000			62236	13736	45436	45791	60608	60608					0.1411395208781414
WRRRPRTRRRK	11	Unmodified	_WRRRPRTRRRK_					0	0	0		ENST00000586866.5_2_19:1077961-1079783:+|nuORF	ENST00000586866.5_2_19:1077961-1079783:+|nuORF	ENST00000586866.5_2_19:1077961-1079783:+|nuORF	MSMS	A375_MHC_IP_R1	1	812.5037231445312	2	812.503807	1622.99306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.33	1	138.33	137.83	138.83	0								0	0	0	0.1636	1	53212	53212		0	0	1				62237	13736	45437	45792	60609	60609					0.20648337261695815
WRRRRKRPAFS	11	Unmodified	_WRRRRKRPAFS_					0	0	0		ENSG00000101188|ENST00000370501|NTSR1	ENSG00000101188|ENST00000370501|NTSR1	ENSG00000101188|ENST00000370501|NTSR1	MULTI-SECPEP	A375_MHC_IP_R2	2	505.3570861816406	3	505.967515	1514.88072	-0.53294	-0.00026965	-0.27214	-0.00013769	-0.80508	-0.00040735	506.3018434183626	143.09	0.30209	143.12	142.99	143.29	0.030731					13	5	3	0	0	0	1.0015	1	55978	55978		0.094841	0.011491	1	1147500			62238	2265	45438	45793	60610	60610					0.14387063464869243
WRRRRLQARR	10	Unmodified	_WRRRRLQARR_					0	0	0		ENST00000281243.9_1_4:17510922-17513691:-|nuORF	ENST00000281243.9_1_4:17510922-17513691:-|nuORF	ENST00000281243.9_1_4:17510922-17513691:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	727.8448486328125	2	727.445426	1452.8763	-0.60703	-0.00044158	-0.053083	-3.8615E-05	-0.66011	-0.00048019	727.445237416908	143.1	0.80891	143.13	142.69	143.5	0.030731					40	15	4	0	0	0	0.72658	1	55858	55858		0.40072	0	1	6129800			62239	10427	45439	45794	60611	60611					0.16797599041956346
WRRRRQNRFRI	11	Unmodified	_WRRRRQNRFRI_					0	0	0		PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant;PRKAR1A|p.A48Dfs*82|1|0.42|ENSG00000108946|chr17:68515541-68515542|-/AT|frameshift_variant	PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant	PRKAR1A|p.R45Dfs*84|1|0.34|ENSG00000108946|chr17:68515532-68515532|A/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	822.113037109375	2	822.48254	1642.95053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.866	1	94.611	94.111	95.111	0.74474								0	0	0	0.1636	1	35678	35678		0	0	1				62240	15226	45440	45795	60612	60612					0.15476942133477678
WRRRRRRLLLL	11	Unmodified	_WRRRRRRLLLL_					0	0	0		ENST00000492275.5_1_21:38445580-38480706:+|nuORF;ENST00000355666.5_1_21:38445580-38459609:+|nuORF	ENST00000492275.5_1_21:38445580-38480706:+|nuORF	ENST00000492275.5_1_21:38445580-38480706:+|nuORF	MSMS	A375_MHC_IP_R1	1	797.88623046875	2	797.523676	1593.0328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.91	1	147.91	147.41	148.41	0								0	0	0	0.1636	1	56496	56496		0	0	1				62241	10955	45441	45796	60613	60613					0.2600046421246134
WRRRRRRRRAA	11	Unmodified	_WRRRRRRRRAA_					0	0	0		ENST00000306085.10_3_7:100730337-100730388:+|nuORF	ENST00000306085.10_3_7:100730337-100730388:+|nuORF	ENST00000306085.10_3_7:100730337-100730388:+|nuORF	MSMS	A375_MHC_IP_R2	2	798.5595092773438	2	798.493773	1594.97299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.42	1	146.44	145.94	146.94	0.019913								0	0	0	0.1636	1	57026	57026		0	0	1				62242	10573	45442	45797	60614	60614					0.19930586321765986
WRRRRRRRRQE	11	Unmodified	_WRRRRRRRRQE_					0	0	0		nc|ENSG00000149177|Q12913-3|PTPRJ	nc|ENSG00000149177|Q12913-3|PTPRJ	nc|ENSG00000149177|Q12913-3|PTPRJ	MULTI-MSMS	A375_MHC_IP_R1	1	856.4067993164062	2	856.007245	1709.99994	-0.66882	-0.00057251	-0.47472	-0.00040637	-1.1435	-0.00097888	856.0065887928889	143.25	0.30276	143.25	142.99	143.29	0					8	5	2	0	0	0	0.73934	1	54926	54926		0	0	1	885960			62243	14673	45443	45798	60615	60615					0.17333650142268198
WRRSELVFWRW	11	Unmodified	_WRRSELVFWRW_					0	0	0		ENST00000551538.5_1_14:105963624-105963882:+|nuORF;nc|ENSG00000185347|Q86SX3-4|TEDC1;ENST00000546536.5_1_14:105957646-105963882:+|nuORF;nc|ENSG00000185347|Q86SX3-5|TEDC1;nc|ENSG00000185347|Q86SX3-3|TEDC1;nc|ENSG00000185347|Q86SX3-2|TEDC1;nc|ENSG00000185347|Q86SX3-6|TEDC1;ENSG00000185347|ENST00000392523|TEDC1	ENST00000551538.5_1_14:105963624-105963882:+|nuORF	ENST00000551538.5_1_14:105963624-105963882:+|nuORF	MSMS	A375_MHC_IP_R2	2	810.9340209960938	2	810.930951	1619.84735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55	1	55.751	55.251	56.251	0.75075								0	0	0	0.16354	1	20767	20767		0.30703	0.03801	1				62244	8660	45444	45799	60616	60616					0.0622201690230213
WRRSLVLLPR	10	Unmodified	_WRRSLVLLPR_					0	0	0		ENST00000487045.6_1_16:31191511-31194161:+|nuORF	ENST00000487045.6_1_16:31191511-31194161:+|nuORF	ENST00000487045.6_1_16:31191511-31194161:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	433.3411865234375	3	432.606813	1294.79861	-0.13486	-5.8344E-05	-0.15442	-6.6801E-05	-0.28928	-0.00012514	432.606679410074	68.693	0.50549	69.428	69.171	69.677	0.73511					17	9	2	0	0	0	0.94755	1	26054	26054		3.0723	1.33	1	1810400			62245	12590	45445	45800	60617	60617					0.16300148333198194
WRRSMAWTSMK	11	Unmodified	_WRRSMAWTSMK_					0	0	0		nc|ENSG00000139998|P59190-2|RAB15	nc|ENSG00000139998|P59190-2|RAB15	nc|ENSG00000139998|P59190-2|RAB15	MSMS	A375_MHC_IP_R2	2	480.4718017578125	3	480.572674	1438.69619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.435	1	32.154	31.654	32.654	0.71857								0	0	0	0.1634	1	11113	11113		1.0136	0	1				62246	14637	45446	45801	60618	60618					-0.0056062879223190976
WRRSMWRWRTR	11	Unmodified	_WRRSMWRWRTR_					0	0	0		ENST00000330978.3_1_16:29465045-29465621:-|nuORF;ENST00000568556.1_3_16:29458291-29465582:-|nuORF	ENST00000330978.3_1_16:29465045-29465621:-|nuORF	ENST00000330978.3_1_16:29465045-29465621:-|nuORF	MSMS	A375_MHC_IP_R2	2	559.679443359375	3	559.632027	1675.87425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.24	1	60.985	60.485	61.485	0.74503								0	0	0	0.16353	1	22803	22803		0.36667	0.27183	1				62247	10765	45447	45802	60619	60619					0.06334802241804027
WRRTRRNRTLA	11	Unmodified	_WRRTRRNRTLA_					0	0	0			REV__ENST00000575285.1_1_16:3273894-3274698:-|nuORF	REV__ENST00000575285.1_1_16:3273894-3274698:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	744.3359985351562	2	743.434724	1484.85489	-0.66031	-0.00049089	0.047387	3.5229E-05	-0.61292	-0.00045567	743.4346762541771	143.24	0.4556	143.27	142.98	143.44	0.024414					17	8	3	0	0	0	0.73934	1	56048	56048		0	0	1	662890	+		62248	16197	45448	45803	60620	60620					0.13186169222603894
WRRVMLKKIYH	11	Unmodified	_WRRVMLKKIYH_					0	0	0		GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	511.6854248046875	3	510.634374	1528.88129	-0.71074	-0.00036293	0.099978	5.1052E-05	-0.61076	-0.00031188	510.6343232002216	133.74	1.1738	133.74	132.89	134.07	0					117	22	6	0	0	0	0.73924	1	51481	51481		0.094841	0.094841	1	199660000			62249	14066	45449	45804	60621	60621					0.1380072206973182
WRRVMLKKIYH	11	Unmodified	_WRRVMLKKIYH_					0	0	0		GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	511.03369140625	3	510.634374	1528.88129	-0.72362	-0.0003695	-0.060267	-3.0775E-05	-0.78388	-0.00040028	510.6342723658564	134.45	4.5436	134.45	134.07	138.61	0					279	88	6	0	0	0	0.73924	1	52576	52576		0.094841	0.011491	1	388110000			62250	14066	45449	45804	60622	60622					0.1380072206973182
WRRVMLKKIYH	11	Unmodified	_WRRVMLKKIYH_					0	0	0		GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	765.8473510742188	2	765.447923	1528.88129	-0.8413	-0.00064397	0.32352	0.00024764	-0.51778	-0.00039633	765.4476375486856	148.5	1.2452	148.5	147.96	149.21	0					53	25	3	0	0	0	0.73934	2	56643	56643;56669		0	0	1	213140			62251	14066	45449	45804	60623;60624	60623					0.1380072206973182
WRRVMLKKIYH	11	Unmodified	_WRRVMLKKIYH_					0	0	0		GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	511.38226318359375	3	510.634374	1528.88129	-0.80106	-0.00040905	0.068364	3.4909E-05	-0.7327	-0.00037414	510.6342577916083	147.93	1.1606	147.93	147.7	148.86	0					46	35	2	0	0	0	1.0015	1	56678	56678		0	0	1	113570			62252	14066	45449	45804	60625	60625					0.1380072206973182
WRRVMLKKIYH	11	Unmodified	_WRRVMLKKIYH_					0	0	0		GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	765.8470458984375	2	765.447923	1528.88129	-0.74756	-0.00057222	0.18092	0.00013849	-0.56664	-0.00043373	765.4478620023351	133.67	1.1738	133.67	132.89	134.07	0					80	22	5	0	0	0	1.0015	1	51312	51312		0	0	1	63648000			62253	14066	45449	45804	60626	60626					0.1380072206973182
WRRVMLKKIYH	11	Unmodified	_WRRVMLKKIYH_					0	0	0		GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	510.5106506347656	3	510.634374	1528.88129	-0.64077	-0.0003272	0.12879	6.5767E-05	-0.51197	-0.00026143	510.6343757076835	134.38	5.5456	134.52	134.13	139.68	0.13901					343	108	7	0	0	0	0.73934	3	52828	52828;53554;54160		0	0	1	413480000			62254	14066	45449	45804	60627;60628;60629	60627					0.1380072206973182
WRRVMLKKIYH	11	Unmodified	_WRRVMLKKIYH_					0	0	0		GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	766.369384765625	2	765.447923	1528.88129	-0.72499	-0.00055494	0.18998	0.00014542	-0.53501	-0.00040952	765.4474784344442	148.6	1.2807	148.61	147.88	149.16	0.018692					64	31	3	0	0	0	0.73934	1	57621	57621		0	0	1	238940			62255	14066	45449	45804	60630	60630					0.1380072206973182
WRRVMLKKIYH	11	Unmodified	_WRRVMLKKIYH_					0	0	0		GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	511.3817443847656	3	510.634374	1528.88129	-0.55872	-0.0002853	0.052747	2.6935E-05	-0.50597	-0.00025837	510.63406567863257	148.1	1.3723	148.12	147.69	149.06	0.018707					87	45	3	0	0	0	1.0015	1	57658	57658		0	0	1	77130			62256	14066	45449	45804	60631	60631					0.1380072206973182
WRRVMLKKIYH	11	Unmodified	_WRRVMLKKIYH_					0	0	0		GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	GPR32|p.E288K|1|0.29|ENSG00000142511|chr19:50771462-50771462|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	510.634374	1528.88129	-0.5584	-0.00028514	-0.23472	-0.00011986	-0.79313	-0.000405	510.63406148319353	147.55	0.22578	147.57	147.46	147.69	0.019897	-0.17942	-0.00022139	NaN	0	33	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59533			62257	14066	45449	45804							0.1380072206973182
WRRVRQRRHAR	11	Unmodified	_WRRVRQRRHAR_					0	0	0			REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	526.21044921875	3	526.313797	1575.91956	-0.83231	-0.00043805	-0.68633	-0.00036122	-1.5186	-0.00079928	526.3138272661328	143.05	0.70396	143.05	142.79	143.49	0					23	13	2	0	0	0	1.0015	1	54868	54868		0.094841	0	1	25988000	+		62258	23571	45450	45805	60632	60632					0.1546378881923829
WRRWAPSSSSE	11	Unmodified	_WRRWAPSSSSE_					0	0	0		ENST00000589408.1_3_19:38893886-38894111:+|nuORF	ENST00000589408.1_3_19:38893886-38894111:+|nuORF	ENST00000589408.1_3_19:38893886-38894111:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	450.1402893066406	3	450.217942	1347.632	-0.67044	-0.00030184	-0.92696	-0.00041733	-1.5974	-0.00071918	450.2173921273776	26.532	0.45663	27.192	26.957	27.414	0.65992					21	8	3	0	0	0	0.73679	1	8879	8879		2.4348	0.18206	1	5355600			62259	13773	45451	45806	60633	60633					-0.02791369353144546
WRRWCWRWPWR	11	Unmodified	_WRRWCWRWPWR_					0	0	0		nc|ENSG00000127252|Q9HDD0-2|PLAAT1	nc|ENSG00000127252|Q9HDD0-2|PLAAT1	nc|ENSG00000127252|Q9HDD0-2|PLAAT1	MSMS	A375_MHC_IP_R1	1	887.4915771484375	2	887.444037	1772.87352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.71	1	117.71	117.21	118.21	0								0	0	0	0.16354	1	43259	43259		0.30703	0.30703	1				62260	14585	45452	45807	60634	60634					0.018000075927602666
WRRWMMCRDLH	11	Unmodified	_WRRWMMCRDLH_					0	0	0			REV__ENST00000393104.6_1_10:112641263-112642826:+|nuORF	REV__ENST00000393104.6_1_10:112641263-112642826:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	795.7719116210938	2	795.373575	1588.7326	-0.75489	-0.00060042	-2.2329	-0.001776	-2.9878	-0.0023764	795.3715583772328	140.6	0.40633	140.64	140.4	140.81	0.042175					13	7	3	0	0	0	0.73809	1	55046	55046		1.1933	0.12188	1	1676700	+		62261	24288	45453	45808	60635	60635					-0.038220751671588005
WRRWMMCRDLH	11	Unmodified	_WRRWMMCRDLH_					0	0	0			REV__ENST00000393104.6_1_10:112641263-112642826:+|nuORF	REV__ENST00000393104.6_1_10:112641263-112642826:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	795.373575	1588.7326	-0.78213	-0.00062209	-1.7529	-0.0013942	-2.535	-0.0020163	795.372179240007	140.55	0.31136	140.55	140.39	140.7	0	-0.045561	0.00026513	NaN	1.1933	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1599100	+		62262	24288	45453	45808							-0.038220751671588005
WRRWNRFCRRK	11	Unmodified	_WRRWNRFCRRK_					0	0	0		nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;CACNA1C|p.P1597Qfs*32|1|0.14|ENSG00000151067|chr12:2668954-2668961|CCTCTGAA/-|frameshift_variant	nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	MSMS	A375_MHC_IP_R1	1	832.6019897460938	2	832.452394	1662.89023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.786	1	96.786	96.286	97.286	0								0	0	0	0.16358	1	35566	35566		0.30703	0.30703	1				62263	5876	45454	45809	60636	60636					0.08530508478725096
WRRWQPRIWAL	11	Unmodified	_WRRWQPRIWAL_					0	0	0		ENSG00000129159|ENST00000265969|KCNC1;nc|ENSG00000129159|P48547|KCNC1	ENSG00000129159|ENST00000265969|KCNC1	ENSG00000129159|ENST00000265969|KCNC1	MSMS	A375_MHC_IP_R2	2	784.4415893554688	2	784.441486	1566.86842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.5341	1	6.9492	6.4492	7.4492	0.4151								0	0	0	0.1636	1	2082	2082		0	0	1				62264	4178	45455	45810	60637	60637					0.10766027001841394
WRRWQVERRRW	11	Unmodified	_WRRWQVERRRW_					0	0	0		ENST00000508390.1_1_3:131245302-131245881:+|nuORF	ENST00000508390.1_1_3:131245302-131245881:+|nuORF	ENST00000508390.1_1_3:131245302-131245881:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	572.3828125	3	571.981824	1712.92364	-0.15522	-8.8783E-05	-0.10226	-5.8489E-05	-0.25748	-0.00014727	571.9824379925506	101.19	0.51105	101.95	101.65	102.16	0.76428					20	9	3	0	0	0	1.0015	1	38381	38381		0.094841	0	1	1997400			62265	12878	45456	45811	60638	60638					0.09569833522277804
WRSCGWLVASP	11	Unmodified	_WRSCGWLVASP_					0	0	0		ENST00000372483.8_1_9:132388465-132394960:+|nuORF	ENST00000372483.8_1_9:132388465-132394960:+|nuORF	ENST00000372483.8_1_9:132388465-132394960:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	631.7105712890625	2	631.310958	1260.60736	-0.30985	-0.00019561	-0.17209	-0.00010865	-0.48194	-0.00030425	631.3107655249064	44.479	0.8672	44.479	44.061	44.928	0					42	16	4	0	0	0	0.98748	1	15453	15453		13.042	2.2185	1	19725000			62266	11203	45457	45812	60639	60639					-0.012517207602286362
WRSHVLWQ	8	Unmodified	_WRSHVLWQ_					0	0	0			REV__ENSG00000123360|ENST00000243052|PDE1B	REV__ENSG00000123360|ENST00000243052|PDE1B	MSMS	A375_MHC_IP_R1	1	371.24224853515625	3	371.198042	1110.5723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.823	1	26.823	26.323	27.323	0								0	0	0	0.16876	1	8051	8051		5.2969	1.7098	1		+		62267	18239	45458	45813	60640	60640					0.021434044941315733
WRSMRKLFLLL	11	Unmodified	_WRSMRKLFLLL_					0	0	0		ENSG00000144229|ENST00000409968|THSD7B	ENSG00000144229|ENST00000409968|THSD7B	ENSG00000144229|ENST00000409968|THSD7B	MULTI-MSMS	A375_MHC_IP_R2	2	488.6785888671875	3	488.295358	1461.86425	-0.38391	-0.00018746	0.71698	0.0003501	0.33306	0.00016263	488.2956072591713	143.14	0.80891	143.17	142.69	143.5	0.030731					30	15	3	0	0	0	0.73897	1	55986	55986		0.094841	0	1	3462100			62268	5473	45459	45814	60641	60641					0.1517880146391235
WRSRRCAPFC	10	Unmodified	_WRSRRCAPFC_					0	0	0			REV__ENST00000532887.5_1_8:145582536-145582912:+|nuORF	REV__ENST00000532887.5_1_8:145582536-145582912:+|nuORF	MSMS	A375_MHC_IP_R2	2	427.77813720703125	3	427.874576	1280.6019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.558	1	19.161	18.661	19.661	0.60308								0	0	0	0.15628	1	5527	5527		0.15932	0	1		+		62269	25870	45460	45815	60642	60642					-0.027177228236951123
WRTFIYGFYFY	11	Unmodified	_WRTFIYGFYFY_					0	0	0		nc|ENSG00000100150|O75140-8|DEPDC5;nc|ENSG00000100150|O75140-5|DEPDC5;nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5	nc|ENSG00000100150|O75140-8|DEPDC5	nc|ENSG00000100150|O75140-8|DEPDC5	MULTI-SECPEP	A375_MHC_IP_R1	1	391.6277160644531	4	391.442132	1561.73942	-0.014505	-5.6779E-06	-0.50266	-0.00019676	-0.51717	-0.00020244	391.44198366252994	19.394	0.58887	19.394	19.238	19.827	0					40	11	5	0	0	0	1.0004	1	4955	4955		1.2148	0	1	53170000			62270	2126	45461	45816	60643	60643					-0.01897792471640969
WRTFVWTL	8	Unmodified	_WRTFVWTL_					0	0	0		chr5:114433893-114463049|128|16.21|0.03|9.33|+|2|TE_info:LTR12C,LTR12C_dup959,ERV1,LTR,donor,+,114432500,114433893|None,KCNN2|5	chr5:114433893-114463049|128|16.21|0.03|9.33|+|2|TE_info:LTR12C,LTR12C_dup959,ERV1,LTR,donor,+,114432500,114433893|None,KCNN2|5	chr5:114433893-114463049|128|16.21|0.03|9.33|+|2|TE_info:LTR12C,LTR12C_dup959,ERV1,LTR,donor,+,114432500,114433893|None,KCNN2|5	MULTI-SECPEP	A375_MHC_IP_R1	1	369.95489501953125	3	370.202793	1107.58655	0.21874	8.0977E-05	-0.18348	-6.7926E-05	0.035255	1.3051E-05	370.2027232494673	27.521	0.55598	27.521	27.179	27.735	0					15	10	2	0	0	0	0.972	1	8345	8345		3.2813	0	1	1423900			62271	481	45462	45817	60644	60644					0.037060569224195206
WRTSVQTLPD	10	Unmodified	_WRTSVQTLPD_					0	0	0		ENST00000330817.10_1_22:50294661-50295054:-|nuORF	ENST00000330817.10_1_22:50294661-50295054:-|nuORF	ENST00000330817.10_1_22:50294661-50295054:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	400.941650390625	3	401.543655	1201.60914	-0.24774	-9.948E-05	0.097023	3.8959E-05	-0.15072	-6.0521E-05	401.5436606622122	55.916	0.15006	55.916	55.841	55.991	0					4	2	2	0	0	0	0.93041	1	20027	20027		11.518	0	1	550940			62272	10764	45463	45818	60645	60645					0.016396115293900948
WRTSVYDTYP	10	Unmodified	_WRTSVYDTYP_					0	0	0			REV__ENSG00000112144|ENST00000676107|CILK1	REV__ENSG00000112144|ENST00000676107|CILK1	MSMS	A375_MHC_IP_R2	2	644.4887084960938	2	644.303852	1286.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.259	1	92.998	92.498	93.498	0.73902								0	0	0	0.15435	1	35087	35087		6.7232	0	1		+		62273	17710	45464	45819	60646	60646					-0.03868094707536329
WRVMERRRWNL	11	Unmodified	_WRVMERRRWNL_					0	0	0			REV__ENSG00000130449|ENST00000252744|ZSWIM6;REV__ENSG00000162415|ENST00000359600|ZSWIM5	REV__ENSG00000162415|ENST00000359600|ZSWIM5	MULTI-MSMS	A375_MHC_IP_R1	1	535.0248413085938	3	534.624649	1600.85212	-0.70454	-0.00037666	0.93333	0.00049898	0.2288	0.00012232	534.6251582573697	19.946	0.50621	19.946	19.674	20.18	0					20	9	4	0	0	0	0.73891	1	5042	5042		0.40827	0.32491	1	2651100	+		62274	20251;18540	45465	45820	60647	60647					0.07572577773430567
WRVMERRRWNL	11	Unmodified	_WRVMERRRWNL_					0	0	0			REV__ENSG00000130449|ENST00000252744|ZSWIM6;REV__ENSG00000162415|ENST00000359600|ZSWIM5	REV__ENSG00000162415|ENST00000359600|ZSWIM5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	534.624649	1600.85212	-1.0598	-0.00056662	0.61339	0.00032793	-0.44645	-0.00023868	534.959324397441	18.955	0.18035	19.559	19.452	19.633	0.60308	-0.19387	-0.00036926	NaN	0.40827	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8366300	+		62275	20251;18540	45465	45820							0.07572577773430567
WRVNIQRKRRQ	11	Unmodified	_WRVNIQRKRRQ_					0	0	0		nc|ENSG00000188227|Q6ZN11-2|ZNF793;ENSG00000188227|ENST00000627814|ZNF793	nc|ENSG00000188227|Q6ZN11-2|ZNF793	nc|ENSG00000188227|Q6ZN11-2|ZNF793	MSMS	A375_MHC_IP_R1	1	770.4524536132812	2	770.458199	1538.90185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.6	1	118.6	118.1	119.1	0								0	0	0	0.16302	1	43722	43722		2.9952	1.6657	1				62276	8893	45466	45821	60648	60648					0.15395028773718877
WRVRRMETHRK	11	Unmodified	_WRVRRMETHRK_					0	0	0		nc|ENSG00000182310|W5XKT8-2|SPACA6;ENST00000331594.6_19:52196686-52197501:+|nuORF	nc|ENSG00000182310|W5XKT8-2|SPACA6	nc|ENSG00000182310|W5XKT8-2|SPACA6	MULTI-MSMS	A375_MHC_IP_R2	2	518.9712524414062	3	518.956399	1553.84737	-1.1174	-0.00057989	-0.025876	-1.3428E-05	-1.1433	-0.00059332	518.956404055426	56.654	0.81753	57.404	57.152	57.969	0.75014					26	15	3	0	0	0	0.73781	1	21601	21601		1.4551	0.24029	1	2567900			62277	10772	45467	45822	60649	60649					0.09259693630633592
WRWDRDRYYYL	11	Unmodified	_WRWDRDRYYYL_					0	0	0			REV__ENSG00000243811|ENST00000216099|APOBEC3D	REV__ENSG00000243811|ENST00000216099|APOBEC3D	MSMS	A375_MHC_IP_R1	1	564.6812133789062	3	564.60743	1690.80046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.202	1	91.202	90.702	91.702	0								0	0	0	0.16358	1	33512	33512		0.094841	0.094841	1		+		62278	22814	45468	45823	60650	60650					-0.017308874394757368
WRWFQKWWPQW	11	Unmodified	_WRWFQKWWPQW_					0	0	0			REV__chr12:54282823-54283812|100|241.53|0.0|24.53|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54282823-54283812|100|241.53|0.0|24.53|+|1|HNRNPA1,HNRNPA1|1	MSMS	A375_MHC_IP_R1	1	867.2271118164062	2	867.428045	1732.84154	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.45	1	112.45	111.95	112.95	0								0	0	0	0.16337	1	41215	41215		1.1933	0.88631	1		+		62279	15691	45469	45824	60651	60651					0.004429183906495382
WRWLTFWRRLQ	11	Unmodified	_WRWLTFWRRLQ_					0	0	0		nc|ENSG00000164284|Q8TAA5-2|GRPEL2	nc|ENSG00000164284|Q8TAA5-2|GRPEL2	nc|ENSG00000164284|Q8TAA5-2|GRPEL2	MSMS	A375_MHC_IP_R2	2	824.8119506835938	2	824.454594	1646.89463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.66	1	107.41	106.91	107.91	0.75977								0	0	0	0.16334	1	40309	40309		1.3295	0.25807	1				62280	14727	45470	45825	60652	60652					0.09706296173271767
WRWRRWRKRW	10	Unmodified	_WRWRRWRKRW_					0	0	0			REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF	REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF	MSMS	A375_MHC_IP_R2	2	557.9708862304688	3	557.983388	1670.92833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.783	1	88.515	88.015	89.015	0.7318								0	0	0	0.15637	1	33393	33393		0.15932	0	1		+		62281	23186	45471	45826	60653	60653					0.1197076245568951
WRWRRWRKRWR	11	Unmodified	_WRWRRWRKRWR_					0	0	0			REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF	REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF	MSMS	A375_MHC_IP_R1	1	914.6866455078125	2	914.521999	1827.02945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.82	1	110.82	110.32	111.32	0								0	0	0	0.1636	1	40629	40629		0	0	1		+		62282	23186	45472	45827	60654	60654					0.149012141583853
WRWRSLRTRRR	11	Unmodified	_WRWRSLRTRRR_					0	0	0		ENST00000344697.2_1_3:43122946-43147521:-|nuORF	ENST00000344697.2_1_3:43122946-43147521:-|nuORF	ENST00000344697.2_1_3:43122946-43147521:-|nuORF	MSMS	A375_MHC_IP_R1	1	543.722412109375	3	543.653819	1627.93963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.28	1	101.28	100.78	101.78	0								0	0	0	0.16358	1	37222	37222		0.08335	0.08335	1				62283	10897	45473	45828	60655	60655					0.15077539759158753
WRWRWRRWRR	10	Unmodified	_WRWRWRRWRR_					0	0	0		ENST00000253814.5_1_5:141488387-141511833:+|nuORF	ENST00000253814.5_1_5:141488387-141511833:+|nuORF	ENST00000253814.5_1_5:141488387-141511833:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	425.283935546875	4	425.740897	1698.93448	-0.10742	-4.5732E-05	0.6039	0.0002571	0.49648	0.00021137	425.9918566821029	63.667	0.65988	64.408	64.191	64.85	0.74022					17	12	2	0	0	0	0.95063	1	24284	24284		0.13989	0	1	1129000			62284	10220	45474	45829	60656	60656					0.11297280687222155
WRYKREEEDRE	11	Unmodified	_WRYKREEEDRE_					0	0	0		nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598;ENST00000565396.5_1_16:2050390-2052694:-|nuORF	nc|ENSG00000167962|Q86UK7-3|ZNF598	nc|ENSG00000167962|Q86UK7-3|ZNF598	MSMS	A375_MHC_IP_R2	2	798.671142578125	2	798.381685	1594.74882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.971	1	50.725	50.225	51.225	0.75406								0	0	0	0.16312	1	18786	18786		2.4985	0	1				62285	7239	45475	45830	60657	60657					-0.02476675924049232
WRYLREYATEQ	11	Unmodified	_WRYLREYATEQ_					0	0	0			REV__nc|ENSG00000133103|Q9Y2V7-2|COG6	REV__nc|ENSG00000133103|Q9Y2V7-2|COG6	MULTI-SECPEP	A375_MHC_IP_R1	1	758.2720336914062	2	757.872965	1513.73138	-0.41802	-0.00031681	-0.005963	-4.5192E-06	-0.42399	-0.00032133	757.8728824759426	89.124	0.30222	89.124	88.97	89.272	0					9	5	2	0	0	0	0.99738	1	32754	32754		2.7352	0	1	2332100	+		62286	18705	45476	45831	60658	60658					-0.004939714590364019
WRYLWLPWLLW	11	Unmodified	_WRYLWLPWLLW_					0	0	0			REV__ENST00000257940.6_1_12:56515445-56515574:+|nuORF	REV__ENST00000257940.6_1_12:56515445-56515574:+|nuORF	MSMS	A375_MHC_IP_R1	1	544.6797485351562	3	544.634368	1630.88128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.976	1	58.976	58.476	59.476	0								0	0	0	0.1635	1	21200	21200		0.50596	0.34663	1		+		62287	23163	45477	45832	60659	60659					0.09107045341352205
WRYLWLPWLLW	11	Unmodified	_WRYLWLPWLLW_					0	0	0			REV__ENST00000257940.6_1_12:56515445-56515574:+|nuORF	REV__ENST00000257940.6_1_12:56515445-56515574:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	545.0332641601562	3	544.634368	1630.88128	-0.80733	-0.0004397	-1.2881	-0.00070156	-2.0955	-0.0011413	544.6337546059922	76.786	0.50642	77.527	77.199	77.705	0.74052					14	9	2	0	0	0	0.73934	1	29177	29177		0	0	1	3829900	+		62288	23163	45477	45832	60660	60660					0.09107045341352205
WRYLWLPWLLW	11	Unmodified	_WRYLWLPWLLW_					0	0	0			REV__ENST00000257940.6_1_12:56515445-56515574:+|nuORF	REV__ENST00000257940.6_1_12:56515445-56515574:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	544.735107421875	3	544.634368	1630.88128	-0.80733	-0.0004397	-1.2881	-0.00070156	-2.0955	-0.0011413	544.6337546059922	76.786	0.50642	77.527	77.199	77.705	0.74052					14	9	2	0	0	0	1.0015	1	29030	29030		0.094841	0	1	3829900	+		62289	23163	45477	45832	60661	60661					0.09107045341352205
WRYPPNAPFY	10	Unmodified	_WRYPPNAPFY_					0	0	0		nc|ENSG00000183914|Q9P225-2|DNAH2;ENSG00000183914|ENST00000572933|DNAH2	nc|ENSG00000183914|Q9P225-2|DNAH2	nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-SECPEP	A375_MHC_IP_R1	1	656.2191772460938	2	655.819473	1309.62439	-0.36573	-0.00023985	-0.11793	-7.7341E-05	-0.48366	-0.00031719	655.8195115039427	46.077	0.40628	46.077	45.839	46.245	0					12	7	2	0	0	0	0.93799	1	16204	16204		3.5965	0.60125	1	1868100			62290	8541	45478	45833	60662	60662					-0.018034768827646985
WRYPPNAPFY	10	Unmodified	_WRYPPNAPFY_					0	0	0		nc|ENSG00000183914|Q9P225-2|DNAH2;ENSG00000183914|ENST00000572933|DNAH2	nc|ENSG00000183914|Q9P225-2|DNAH2	nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-MATCH	A375_MHC_IP_R2	2		2	655.819473	1309.62439	-0.92038	-0.0006036	0.09641	6.3227E-05	-0.82397	-0.00054038	655.819667426748	45.359	0.45657	46.124	45.846	46.303	0.76519	0.023931	0.00025076	NaN	3.5965	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2686700			62291	8541	45478	45833							-0.018034768827646985
WRYRRRYSLVL	11	Unmodified	_WRYRRRYSLVL_					0	0	0		ENST00000465608.1_1_10:99344097-99344382:+|nuORF	ENST00000465608.1_1_10:99344097-99344382:+|nuORF	ENST00000465608.1_1_10:99344097-99344382:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	524.0369262695312	3	523.303793	1566.88955	-0.75551	-0.00039536	-1.0433	-0.00054598	-1.7988	-0.00094134	523.3034712129488	133.66	1.1193	133.66	133.2	134.32	0					58	21	4	0	0	0	0.73881	1	51640	51640		0.50596	0.051438	1	8191400			62292	12245	45479	45834	60663	60663					0.12877992310700392
WSCHWDRDHRR	11	Unmodified	_WSCHWDRDHRR_					0	0	0		nc|ENSG00000109920|Q8N3X1-2|FNBP4;ENSG00000109920|ENST00000263773|FNBP4;ENST00000525792.5_1_11:47746320-47755666:-|nuORF	nc|ENSG00000109920|Q8N3X1-2|FNBP4	nc|ENSG00000109920|Q8N3X1-2|FNBP4	MSMS	A375_MHC_IP_R1	1	518.6292114257812	3	518.569092	1552.68545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.21	1	37.21	36.71	37.71	0								0	0	0	0.16232	1	12526	12526		6.6235	1.9075	1				62293	2904	45480	45835	60664	60664					-0.0687889512230413
WSCSCCCCW	9	Unmodified	_WSCSCCCCW_					0	0	0			REV__ENSG00000171700|ENST00000395042|RGS19	REV__ENSG00000171700|ENST00000395042|RGS19	MSMS	A375_MHC_IP_R1	1	540.6659545898438	2	540.646861	1079.27917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.844	1	66.844	66.344	67.344	0								0	0	0	0.15486	1	24218	24218		0.6015	0	1		+		62294	21088	45481	45836	60665	60665					-0.2572986160091659
WSDGHLIYY	9	Unmodified	_WSDGHLIYY_					0	0	0		nc|ENSG00000115762|Q96CS7-4|PLEKHB2;nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	MULTI-MSMS	A375_MHC_IP_R1	1	577.6690673828125	2	577.269281	1152.52401	-0.055765	-3.2191E-05	0.0090403	5.2187E-06	-0.046724	-2.6973E-05	577.2692136275327	79.118	1.7854	79.118	78.756	80.541	0					81	34	4	0	0	0	0.17328	1	29042	29042		39.957	7.6518	1	69763000			62295	3339	45482	45837	60666	60666					-0.04615133936431448
WSDGHLIYY	9	Unmodified	_WSDGHLIYY_					0	0	0		nc|ENSG00000115762|Q96CS7-4|PLEKHB2;nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	MULTI-MSMS	A375_MHC_IP_R2	2	577.6689453125	2	577.269281	1152.52401	-0.12798	-7.3879E-05	-0.65888	-0.00038035	-0.78686	-0.00045423	577.2689872854328	78.421	1.3708	79.166	78.828	80.199	0.74474					79	26	6	0	0	0	0.0094266	2	29716	29716;29734		97.075	48.729	1	55878000			62296	3339	45482	45837	60667;60668	60667					-0.04615133936431448
WSDNSPLKY	9	Unmodified	_WSDNSPLKY_					0	0	0		ENSG00000011028|ENST00000303375|MRC2	ENSG00000011028|ENST00000303375|MRC2	ENSG00000011028|ENST00000303375|MRC2	MULTI-MSMS	A375_MHC_IP_R1	1	555.6657104492188	2	555.266739	1108.51892	-0.54525	-0.00030276	-0.13181	-7.3192E-05	-0.67707	-0.00037595	555.2665585957177	55.396	0.71403	55.396	55.075	55.79	0					27	13	3	0	0	0	0.39434	1	19781	19781		24.991	6.8446	1	5646600			62297	990	45483	45838	60669	60669					-0.030994377990509747
WSDNSPLKY	9	Unmodified	_WSDNSPLKY_					0	0	0		ENSG00000011028|ENST00000303375|MRC2	ENSG00000011028|ENST00000303375|MRC2	ENSG00000011028|ENST00000303375|MRC2	MULTI-SECPEP	A375_MHC_IP_R2	2	555.6663208007812	2	555.266739	1108.51892	-0.96069	-0.00053344	0.051341	2.8508E-05	-0.90935	-0.00050493	555.2667022688023	54.661	0.55951	55.412	55.118	55.678	0.75075					23	10	3	0	0	0	0.54812	1	20625	20625		24.991	6.8446	1	6274500			62298	990	45483	45838	60670	60670					-0.030994377990509747
WSDNSPLKY	9	Unmodified	_WSDNSPLKY_					0	0	0		ENSG00000011028|ENST00000303375|MRC2	ENSG00000011028|ENST00000303375|MRC2	ENSG00000011028|ENST00000303375|MRC2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	555.266739	1108.51892	-0.54525	-0.00030276	-0.13181	-7.3192E-05	-0.67707	-0.00037595	555.2665585957177	55.396	0.71403	55.396	55.075	55.79	0	-0.0083019	-0.00011301	NaN	24.991	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5646600			62299	990	45483	45838							-0.030994377990509747
WSDTPPLAY	9	Unmodified	_WSDTPPLAY_					0	0	0		ENSG00000157353|ENST00000288078|FCSK;nc|ENSG00000157353|Q8N0W3-2|FCSK;ENST00000464499.5_1_16:70508533-70512710:+|nuORF	ENSG00000157353|ENST00000288078|FCSK	ENSG00000157353|ENST00000288078|FCSK	MULTI-SECPEP	A375_MHC_IP_R2	2	1048.9049072265625	1	1049.49384	1048.48656	0.15463	0.00016228	0.75907	0.00079663	0.91369	0.00095892	1049.4947392155755	93.203	0.55897	93.942	93.646	94.205	0.73902					15	10	2	0	0	0	0.65246	1	35413	35413		21.747	15.023	1	1711300			62300	6239	45484	45839	60671	60671					-0.03574225202055459
WSDTPPLAY	9	Unmodified	_WSDTPPLAY_					0	0	0		ENSG00000157353|ENST00000288078|FCSK;nc|ENSG00000157353|Q8N0W3-2|FCSK;ENST00000464499.5_1_16:70508533-70512710:+|nuORF	ENSG00000157353|ENST00000288078|FCSK	ENSG00000157353|ENST00000288078|FCSK	MULTI-MATCH	A375_MHC_IP_R1	1		1	1049.49384	1048.48656	0.15269	0.00016025	-0.08025	-8.4222E-05	0.07244	7.6025E-05	1049.4935132754927	93.799	0.55619	93.799	93.584	94.14	0	-0.071572	-0.00049046	NaN	21.747	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1374400			62301	6239	45484	45839							-0.03574225202055459
WSKSTTPF	8	Unmodified	_WSKSTTPF_					0	0	0			REV__ENST00000538304.1_1_12:8540479-8549035:-|nuORF	REV__ENST00000538304.1_1_12:8540479-8549035:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	477.6398620605469	2	477.239993	952.465432	-0.65206	-0.00031119	-0.16878	-8.0548E-05	-0.82084	-0.00039174	477.239974240467	62.441	0.5085	63.183	62.925	63.434	0.74263					17	9	3	0	0	0	0.77515	1	23667	23667		12.532	0.89125	1	2291100	+		62302	25934	45485	45840	60672	60672					-0.012701905109111067
WSKYNPKDQLY	11	Unmodified	_WSKYNPKDQLY_					0	0	0		nc|ENSG00000165246|Q8NFZ3|NLGN4Y;ENSG00000146938|ENST00000381095|NLGN4X;nc|ENSG00000146938|Q8N0W4-2|NLGN4X;ENSG00000165246|ENST00000684976|NLGN4Y;nc|ENSG00000165246|Q8NFZ3-2|NLGN4Y	nc|ENSG00000165246|Q8NFZ3|NLGN4Y	nc|ENSG00000165246|Q8NFZ3|NLGN4Y	MULTI-MSMS	A375_MHC_IP_R1	1	481.97589111328125	3	481.241865	1440.70376	-0.70088	-0.00033729	-0.38894	-0.00018717	-1.0898	-0.00052447	481.2415745048385	41.279	0.55745	41.279	40.963	41.521	0					20	10	3	0	0	0	0.72515	1	14260	14260		13.519	0.66272	1	3911700			62303	5646	45486	45841	60673	60673					0.0010412528072265559
WSKYNPKDQLY	11	Unmodified	_WSKYNPKDQLY_					0	0	0		nc|ENSG00000165246|Q8NFZ3|NLGN4Y;ENSG00000146938|ENST00000381095|NLGN4X;nc|ENSG00000146938|Q8N0W4-2|NLGN4X;ENSG00000165246|ENST00000684976|NLGN4Y;nc|ENSG00000165246|Q8NFZ3-2|NLGN4Y	nc|ENSG00000165246|Q8NFZ3|NLGN4Y	nc|ENSG00000165246|Q8NFZ3|NLGN4Y	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	481.241865	1440.70376	-0.70088	-0.00033729	-0.38894	-0.00018717	-1.0898	-0.00052447	481.2415745048385	41.279	0.55745	41.279	40.963	41.521	0	-0.029139	0.0001307	NaN	13.519	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3911700			62304	5646	45486	45841							0.0010412528072265559
WSKYNPKDQLY	11	Unmodified	_WSKYNPKDQLY_					0	0	0		nc|ENSG00000165246|Q8NFZ3|NLGN4Y;ENSG00000146938|ENST00000381095|NLGN4X;nc|ENSG00000146938|Q8N0W4-2|NLGN4X;ENSG00000165246|ENST00000684976|NLGN4Y;nc|ENSG00000165246|Q8NFZ3-2|NLGN4Y	nc|ENSG00000165246|Q8NFZ3|NLGN4Y	nc|ENSG00000165246|Q8NFZ3|NLGN4Y	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	481.241865	1440.70376	-0.68678	-0.00033051	-0.53618	-0.00025803	-1.223	-0.00058854	481.2416396451836	40.563	0.45766	41.337	41.082	41.54	0.77451	0.029139	-8.1868E-05	NaN	13.519	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3445800			62305	5646	45486	45841							0.0010412528072265559
WSPAVPVKKA	10	Unmodified	_WSPAVPVKKA_					0	0	0		nc|ENSG00000133226|Q8IYB3-2|SRRM1;ENSG00000133226|ENST00000323848|SRRM1	nc|ENSG00000133226|Q8IYB3-2|SRRM1	nc|ENSG00000133226|Q8IYB3-2|SRRM1	MSMS	A375_MHC_IP_R2	2	541.7217407226562	2	541.821484	1081.62842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.04	1	145.06	144.56	145.56	0.021408								0	0	0	0.15531	1	56637	56637		3.5965	0.31518	1				62306	4495	45487	45842	60674	60674					0.09086612610940392
WSPEEEAHLR	10	Unmodified	_WSPEEEAHLR_					0	0	0		nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS;ENST00000557589.1_1_12:56815505-56817595:-|nuORF	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MSMS	A375_MHC_IP_R2	2	627.2086181640625	2	627.299101	1252.58365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.059	1	63.802	63.302	64.302	0.74263								0	0	0	0.15309	1	23907	23907		10.8	2.0541	1				62307	3000	45488	45843	60675	60675					-0.03253862993074108
WSQHYHQGYY	10	Unmodified	_WSQHYHQGYY_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-MSMS	A375_MHC_IP_R1	1	457.2629699707031	3	456.863388	1367.56833	-0.59774	-0.00027309	0.1292	5.9026E-05	-0.46855	-0.00021406	456.8634385817661	29.074	0.55788	29.074	28.845	29.403	0					27	10	4	0	0	0	0.069075	1	9047	9047		70.496	70.496	1	14133000			62308	6014	45489	45844	60676	60676					-0.10074729790244419
WSQHYHQGYY	10	Unmodified	_WSQHYHQGYY_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-MSMS	A375_MHC_IP_R2	2	457.26312255859375	3	456.863388	1367.56833	-0.68106	-0.00031115	0.06094	2.7841E-05	-0.62012	-0.00028331	456.86338164785946	28.356	0.45479	29.035	28.858	29.313	0.67857					20	8	3	0	0	0	0.0031567	1	9782	9782		97.284	85.056	1	14724000			62309	6014	45489	45844	60677	60677					-0.10074729790244419
WSQHYHQGYY	10	Unmodified	_WSQHYHQGYY_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-SECPEP	A375_MHC_IP_R2	2	685.1905517578125	2	684.791444	1367.56833	-1.0403	-0.00071242	0.17886	0.00012248	-0.86149	-0.00058994	684.7913788684355	28.356	0.35524	29.035	28.858	29.214	0.67857					11	6	2	0	0	0	0.072569	1	9822	9822		85.764	61.975	1	4185800			62310	6014	45489	45844	60678	60678					-0.10074729790244419
WSQHYHQGYY	10	Unmodified	_WSQHYHQGYY_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	MULTI-MATCH	A375_MHC_IP_R1	1		2	684.791444	1367.56833	-0.98015	-0.0006712	0.19104	0.00013082	-0.78911	-0.00054037	685.2929105192868	29.072	0.30707	29.072	28.945	29.252	0	0.018702	5.5889E-06	NaN	85.764	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4686900			62311	6014	45489	45844							-0.10074729790244419
WSRVLASW	8	Unmodified	_WSRVLASW_					0	0	0			REV__nc|ENSG00000153094|O43521-12|BCL2L11	REV__nc|ENSG00000153094|O43521-12|BCL2L11	MULTI-SECPEP	A375_MHC_IP_R2	2	503.54083251953125	2	502.769252	1003.52395	-0.57559	-0.00028939	-1.0422	-0.00052398	-1.6178	-0.00081337	503.2703833665265	88.192	0.55717	88.924	88.621	89.178	0.7318					15	10	2	0	0	0	0.97021	1	33648	33648		10.824	10.824	1	1406000	+		62312	27294	45490	45845	60679	60679					0.02232910854218062
WSSQRRRTLLR	11	Unmodified	_WSSQRRRTLLR_					0	0	0		ENST00000372398.5_1_9:132984955-132985430:+|nuORF	ENST00000372398.5_1_9:132984955-132985430:+|nuORF	ENST00000372398.5_1_9:132984955-132985430:+|nuORF	MSMS	A375_MHC_IP_R1	1	730.2113037109375	2	729.923658	1457.83276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.17	1	91.17	90.67	91.67	0								0	0	0	0.16312	1	33501	33501		2.4985	1.169	1				62313	11198	45491	45846	60680	60680					0.1221594475416623
WSSVRRRCF	9	Unmodified	_WSSVRRRCF_					0	0	0			REV__ENSG00000163961|ENST00000318037|RNF168	REV__ENSG00000163961|ENST00000318037|RNF168	MSMS	A375_MHC_IP_R2	2	399.65069580078125	3	399.541703	1195.60328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.823	1	19.427	18.927	19.927	0.60308								0	0	0	0.15486	1	5618	5618		0.26902	0.1097	1		+		62314	20434	45492	45847	60681	60681					0.013302345367264934
WSTKESPRW	9	Unmodified	_WSTKESPRW_					0	0	0		ENST00000519675.1_1_8:105521165-105601125:-|nuORF;nc|ENSG00000147650|Q9Y561-2|LRP12;ENSG00000147650|ENST00000276654|LRP12	ENST00000519675.1_1_8:105521165-105601125:-|nuORF	ENST00000519675.1_1_8:105521165-105601125:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	393.2765808105469	3	392.864729	1175.57236	-0.12421	-4.8796E-05	1.5993	0.0006283	1.4751	0.0005795	392.86553714982495	36.458	1.0645	36.458	36.236	37.301	0					30	20	3	0	0	0	0.53783	1	12206	12206		34.222	24.678	1	4030300			62315	5698	45493	45848	60682	60682					-0.008406402965420057
WSTKESPRW	9	Unmodified	_WSTKESPRW_					0	0	0		ENST00000519675.1_1_8:105521165-105601125:-|nuORF;nc|ENSG00000147650|Q9Y561-2|LRP12;ENSG00000147650|ENST00000276654|LRP12	ENST00000519675.1_1_8:105521165-105601125:-|nuORF	ENST00000519675.1_1_8:105521165-105601125:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	393.2768249511719	3	392.864729	1175.57236	-0.38639	-0.0001518	2.1177	0.00083199	1.7314	0.00068019	392.86564743707737	35.645	0.96673	36.408	36.03	36.997	0.76338					34	17	3	0	0	0	0.44554	1	12923	12923		40.725	32.78	1	4792600			62316	5698	45493	45848	60683	60683					-0.008406402965420057
WSTRFRLTFCS	11	Unmodified	_WSTRFRLTFCS_					0	0	0			REV__ENST00000565881.5_1_15:75130108-75132610:-|nuORF	REV__ENST00000565881.5_1_15:75130108-75132610:-|nuORF	MSMS	A375_MHC_IP_R1	1	468.4661865234375	3	468.567806	1402.68159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.965	1	23.965	23.465	24.465	0								0	0	0	0.16351	1	6689	6689		0.45452	0	1		+		62317	26237	45494	45849	60684	60684					-0.0036437766871131316
WSTRFRLTFCS	11	Unmodified	_WSTRFRLTFCS_					0	0	0			REV__ENST00000565881.5_1_15:75130108-75132610:-|nuORF	REV__ENST00000565881.5_1_15:75130108-75132610:-|nuORF	MSMS	A375_MHC_IP_R2	2	468.46612548828125	3	468.567806	1402.68159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.967	1	23.598	23.098	24.098	0.63014								0	0	0	0.16351	1	7332	7332		0.45452	0	1		+		62318	26237	45494	45849	60685	60685					-0.0036437766871131316
WSTTLVPWLC	10	Unmodified	_WSTTLVPWLC_					0	0	0			REV__ENST00000482378.6_2_12:56226965-56228769:+|nuORF	REV__ENST00000482378.6_2_12:56226965-56228769:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1204.99658203125	1	1205.60234	1204.59507	-0.31683	-0.00038197	-0.62921	-0.00075857	-0.94604	-0.0011405	1205.600771883888	121.03	0.25381	121.03	120.91	121.16	0					5	4	2	0	0	0	0.92957	1	44877	44877		10.074	0.6908	1	21252000	+		62319	25279	45495	45850	60686	60686					0.0009524277672880999
WSVRRLWLL	9	Unmodified	_WSVRRLWLL_					0	0	0			REV__ENST00000261483.4_1_5:109026062-109026122:+|nuORF	REV__ENST00000261483.4_1_5:109026062-109026122:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	615.84130859375	2	614.8693	1227.72405	-0.61736	-0.00037959	-0.028959	-1.7806E-05	-0.64632	-0.0003974	614.8693792179845	106.16	0.96958	106.92	106.37	107.34	0.75977					40	18	3	0	0	0	0.68046	1	40139	40139		4.756	0	1	4331200	+		62320	23188	45496	45851	60687	60687					0.11929385521852964
WTDILSHGRY	10	Unmodified	_WTDILSHGRY_					0	0	0		CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7	CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant	CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	416.9436340332031	3	416.543767	1246.60947	0.26589	0.00011075	-0.5653	-0.00023547	-0.29941	-0.00012472	416.54346933740834	55.478	0.51	55.478	55.177	55.687	0					28	9	4	0	0	0	0.22711	1	19819	19819		46.475	35.576	1	4972800			62321	387	45497	45852	60688	60688					-0.003969687507378694
WTDILSHGRY	10	Unmodified	_WTDILSHGRY_					0	0	0		CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7	CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant	CHD7|p.L1934Qfs*2|1|0.41|ENSG00000171316|chr8:60852154-60852154|T/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	416.9435729980469	3	416.543767	1246.60947	-0.22153	-9.2277E-05	-0.14665	-6.1086E-05	-0.36818	-0.00015336	416.54362237221767	54.602	0.66087	55.353	55.118	55.779	0.75075					27	12	3	0	0	0	0.60245	1	20609	20609		38.559	38.559	1	7388600			62322	387	45497	45852	60689	60689					-0.003969687507378694
WTDINVVVY	9	Unmodified	_WTDINVVVY_					0	0	0		ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENST00000569225.5_1_16:53269177-53281416:+|nuORF;CHD9|p.R928C|1|0.55|ENSG00000177200|chr16:53238491-53238491|C/T|missense_variant;CHD9|p.H939Y|1|0.45|ENSG00000177200|chr16:53238524-53238524|C/T|missense_variant	ENSG00000177200|ENST00000447540|CHD9	ENSG00000177200|ENST00000447540|CHD9	MULTI-MSMS	A375_MHC_IP_R1	1	555.1873779296875	2	554.787307	1107.56006	-0.073414	-4.0729E-05	-0.13708	-7.6052E-05	-0.2105	-0.00011678	554.7871492720428	114.51	0.60805	114.51	114.21	114.82	0					16	11	2	0	0	0	0.030038	1	42016	42016		74.929	36.753	1	2023100			62323	8069	45498	45853	60690	60690					0.010583232404542287
WTDINVVVY	9	Unmodified	_WTDINVVVY_					0	0	0		ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENST00000569225.5_1_16:53269177-53281416:+|nuORF;CHD9|p.R928C|1|0.55|ENSG00000177200|chr16:53238491-53238491|C/T|missense_variant;CHD9|p.H939Y|1|0.45|ENSG00000177200|chr16:53238524-53238524|C/T|missense_variant	ENSG00000177200|ENST00000447540|CHD9	ENSG00000177200|ENST00000447540|CHD9	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1866455078125	2	554.787307	1107.56006	-0.56204	-0.00031181	-0.4788	-0.00026563	-1.0408	-0.00057744	554.7869712768722	113.79	0.60108	114.5	114.23	114.83	0.70984					18	11	2	0	0	0	0.053904	1	42906	42906		85.272	49.145	1	2323200			62324	8069	45498	45853	60691	60691					0.010583232404542287
WTDPTIVTG	9	Unmodified	_WTDPTIVTG_					0	0	0			REV__ENSG00000119878|ENST00000238892|CRIPT	REV__ENSG00000119878|ENST00000238892|CRIPT	MULTI-SECPEP	A375_MHC_IP_R2	2	494.6945495605469	2	495.250557	988.486562	-0.87465	-0.00043317	0.506	0.0002506	-0.36865	-0.00018258	495.2507835904706	59.398	0.7081	60.145	59.793	60.501	0.74714					18	13	2	0	0	0	0.4261	1	22498	22498		37.974	17.52	1	1169900	+		62325	18098	45499	45854	60692	60692					-0.008142252020320484
WTEEDYDRLRP	11	Unmodified	_WTEEDYDRLRP_					0	0	0		ENST00000489471.5_3_2:46787807-46808219:+|nuORF	ENST00000489471.5_3_2:46787807-46808219:+|nuORF	ENST00000489471.5_3_2:46787807-46808219:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	740.7461547851562	2	740.34678	1478.67901	-0.78902	-0.00058414	-0.20008	-0.00014813	-0.98909	-0.00073227	740.3467225971284	70.328	0.70986	71.062	70.743	71.453	0.73421					39	13	4	0	0	0	0.69231	1	26609	26609		16.149	2.5342	1	11467000			62326	12631	45500	45855	60693	60693					-0.04118554592673718
WTEFILLSV	9	Unmodified	_WTEFILLSV_					0	0	0		ENST00000398808.3_1_11:61038963-61040779:-|nuORF	ENST00000398808.3_1_11:61038963-61040779:-|nuORF	ENST00000398808.3_1_11:61038963-61040779:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	554.7050170898438	2	554.307875	1106.6012	-0.848	-0.00047005	-4.0306	-0.0022342	-4.8786	-0.0027042	554.3050769775105	96.544	0.4564	97.299	96.962	97.419	0.75586					13	8	2	0	0	0	0.41879	1	36662	36662		25.399	2.663	1	1381600			62327	11527	45501	45856	60694	60694					0.05216084279913957
WTEMNTIVY	9	Unmodified	_WTEMNTIVY_					0	0	0		ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	ENSG00000100888|ENST00000646647|CHD8	ENSG00000100888|ENST00000646647|CHD8	MULTI-MSMS	A375_MHC_IP_R1	1	1156.2325439453125	1	1156.53432	1155.52705	0.060069	6.9471E-05	-1.6376	-0.001894	-1.5776	-0.0018245	1156.5313830021569	100.86	0.65753	100.86	100.48	101.14	0					16	12	2	0	0	0	0.32092	1	37012	37012		29.082	3.6823	1	1985600			62328	2228	45502	45857	60695	60695					-0.044496268739294464
WTEMNTIVY	9	Unmodified	_WTEMNTIVY_					0	0	0		ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	ENSG00000100888|ENST00000646647|CHD8	ENSG00000100888|ENST00000646647|CHD8	MULTI-SECPEP	A375_MHC_IP_R1	1	579.17041015625	2	578.7708	1155.52705	-0.15381	-8.9019E-05	-0.97909	-0.00056667	-1.1329	-0.00065569	578.7696706997452	100.84	1.0137	100.84	100.38	101.39	0					29	19	2	0	0	0	0.38578	1	37057	37057		34.402	17.459	1	3323800			62329	2228	45502	45857	60696	60696					-0.044496268739294464
WTEMNTIVY	9	Unmodified	_WTEMNTIVY_					0	0	0		ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	ENSG00000100888|ENST00000646647|CHD8	ENSG00000100888|ENST00000646647|CHD8	MULTI-SECPEP	A375_MHC_IP_R2	2	579.170166015625	2	578.7708	1155.52705	-0.012374	-7.1617E-06	-1.332	-0.00077094	-1.3444	-0.0007781	578.7696486724052	100.18	0.6618	100.94	100.52	101.19	0.76278					26	12	3	0	0	0	0.28216	1	37963	37963		34.402	19.563	1	2296500			62330	2228	45502	45857	60697	60697					-0.044496268739294464
WTEMNTIVY	9	Unmodified	_WTEMNTIVY_					0	0	0		ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	ENSG00000100888|ENST00000646647|CHD8	ENSG00000100888|ENST00000646647|CHD8	MULTI-MATCH	A375_MHC_IP_R2	2		1	1156.53432	1155.52705	0.3791	0.00043844	-2.4123	-0.0027899	-2.0332	-0.0023515	1156.5315288735903	100.04	0.45718	100.8	100.57	101.03	0.76278	-0.029756	-0.00033492	NaN	29.082	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2604300			62331	2228	45502	45857							-0.044496268739294464
WTESSNPIL	9	Unmodified	_WTESSNPIL_					0	0	0			REV__ENST00000548878.6_1_12:110874873-110883331:-|nuORF	REV__ENST00000548878.6_1_12:110874873-110883331:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	523.6995849609375	2	523.761289	1045.50803	-0.54838	-0.00028722	-0.94392	-0.00049439	-1.4923	-0.00078161	523.7608754270984	105.97	0.66351	106.73	106.32	106.99	0.75977					19	12	2	0	0	0	0.29981	1	40064	40064		30.637	3.7529	1	1208000	+		62332	26018	45503	45858	60698	60698					-0.012908401733284336
WTFEILLL	8	Unmodified	_WTFEILLL_					0	0	0		ENST00000414645.6_1_8:95802210-95802267:+|nuORF	ENST00000414645.6_1_8:95802210-95802267:+|nuORF	ENST00000414645.6_1_8:95802210-95802267:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	518.6991577148438	2	517.799686	1033.58482	-0.57968	-0.00030016	0.0051308	2.6567E-06	-0.57455	-0.0002975	517.7997506306144	135.8	2.6033	135.91	134.52	137.12	0.11134					152	50	6	0	0	0	0.77717	1	53233	53233		5.2307	0	1	252310000			62333	11668	45504	45859	60699	60699					0.06937003113830542
WTGRALTEAA	10	Unmodified	_WTGRALTEAA_					0	0	0		ENST00000340622.7_1_7:149191544-149194826:-|nuORF	ENST00000340622.7_1_7:149191544-149194826:-|nuORF	ENST00000340622.7_1_7:149191544-149194826:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	539.6817626953125	2	538.28018	1074.54581	-0.82425	-0.00044367	-0.30057	-0.00016179	-1.1248	-0.00060546	538.2802206936434	63.002	0.96171	63.745	63.282	64.244	0.74263					49	18	4	0	0	0	0.57505	1	23850	23850		22.736	1.1993	1	4647300			62334	10859	45505	45860	60700	60700					0.011516708121462216
WTKAINQLAV	10	Unmodified	_WTKAINQLAV_					0	0	0			REV__ENSG00000183914|ENST00000572933|DNAH2	REV__ENSG00000183914|ENST00000572933|DNAH2	MSMS	A375_MHC_IP_R1	1	381.91741943359375	3	381.888874	1142.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.128	1	31.128	30.628	31.628	0								0	0	0	0.15539	1	9949	9949		3.3196	0.24738	1		+		62335	21788	45506	45861	60701	60701					0.07917693777039858
WTKKRRRRKRR	11	Unmodified	_WTKKRRRRKRR_					0	0	0			REV__ENST00000389672.9_1_3:96533549-96533720:+|nuORF	REV__ENST00000389672.9_1_3:96533549-96533720:+|nuORF	MSMS	A375_MHC_IP_R2	2	814.4207153320312	2	814.021832	1626.02911	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.686	1	63.429	62.929	63.929	0.74263								0	0	0	0.1636	1	23762	23762		0	0	1		+		62336	24255	45507	45862	60702	60702					0.24113794438540026
WTKQRVNKN	9	Unmodified	_WTKQRVNKN_					0	0	0			REV__ENSG00000133773|ENST00000256151|CCDC59	REV__ENSG00000133773|ENST00000256151|CCDC59	MSMS	A375_MHC_IP_R1	1	587.0579223632812	2	587.327996	1172.64144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.86	1	121.86	121.36	122.36	0								0	0	0	0.15486	1	45288	45288		10.074	1.3285	1		+		62337	18732	45508	45863	60703	60703					0.06202443723032047
WTKWLLRLE	9	Unmodified	_WTKWLLRLE_					0	0	0		ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	MSMS	A375_MHC_IP_R1	1	415.595458984375	3	415.576519	1243.70773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.103	1	59.103	58.603	59.603	0								0	0	0	0.15486	1	21251	21251		10.8	5.2762	1				62338	4003	45509	45864	60704	60704					0.09562259565063869
WTLRAMLMI	9	Unmodified	_WTLRAMLMI_					0	0	0			REV__ENSG00000163220|ENST00000368738|S100A9	REV__ENSG00000163220|ENST00000368738|S100A9	MULTI-SECPEP	A375_MHC_IP_R2	2	379.6325988769531	3	378.876924	1133.60894	0.089726	3.3995E-05	0.39631	0.00015015	0.48603	0.00018415	378.87707921538885	27.723	0.60792	28.401	28.2	28.808	0.67857					28	11	3	0	0	0	0.4261	1	9472	9472		22.658	0	1	21112000	+		62339	20344	45510	45865	60705	60705					0.04748197004164467
WTLRRFQP	8	Unmodified	_WTLRRFQP_					0	0	0		ENST00000471480.6_1_22:30682838-30683547:-|nuORF	ENST00000471480.6_1_22:30682838-30683547:-|nuORF	ENST00000471480.6_1_22:30682838-30683547:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	369.2577209472656	3	368.541809	1102.6036	0.092634	3.4139E-05	1.7513	0.00064543	1.8439	0.00067957	368.5425161443302	41.5	0.30284	42.274	42.098	42.401	0.77451					7	5	2	0	0	0	0.972	1	15386	15386		3.9444	0.94915	1	844860			62340	12354	45511	45866	60706	60706					0.05639977528221607
WTLRSRGRF	9	Unmodified	_WTLRSRGRF_					0	0	0		ENST00000359842.9_1_1:165414228-165414372:-|nuORF	ENST00000359842.9_1_1:165414228-165414372:-|nuORF	ENST00000359842.9_1_1:165414228-165414372:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	393.956298828125	3	393.55623	1177.64686	-0.21048	-8.2835E-05	0.040986	1.613E-05	-0.16949	-6.6705E-05	393.5562189216412	31.172	0.45856	31.89	31.669	32.128	0.71857					17	8	3	0	0	0	0.60982	1	11010	11010		14.405	1.3629	1	4344800			62341	11017	45512	45867	60707	60707					0.06514167305499541
WTLRSRGRF	9	Unmodified	_WTLRSRGRF_					0	0	0		ENST00000359842.9_1_1:165414228-165414372:-|nuORF	ENST00000359842.9_1_1:165414228-165414372:-|nuORF	ENST00000359842.9_1_1:165414228-165414372:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	393.55623	1177.64686	-0.019354	-7.6171E-06	-0.018398	-7.2408E-06	-0.037753	-1.4858E-05	393.55620117229256	32.107	0.41196	32.107	31.87	32.282	0	0.10851	-4.3095E-05	NaN	14.405	18	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4002500			62342	11017	45512	45867							0.06514167305499541
WTPDGIPTLSN	11	Unmodified	_WTPDGIPTLSN_					0	0	0		ENSG00000006071|ENST00000389817|ABCC8;nc|ENSG00000006071|Q09428-2|ABCC8	ENSG00000006071|ENST00000389817|ABCC8	ENSG00000006071|ENST00000389817|ABCC8	MULTI-MSMS	A375_MHC_IP_R2	2	601.1920166015625	2	600.798403	1199.58225	-0.93069	-0.00055916	-0.82685	-0.00049677	-1.7575	-0.0010559	600.7976672567901	56.785	1.273	57.535	57	58.273	0.75015					62	24	4	0	0	0	0.72565	1	21348	21348		13.042	0	1	33376000			62343	907	45513	45868	60708	60708					-0.00955497081804424
WTRFQWRRRAW	11	Unmodified	_WTRFQWRRRAW_					0	0	0		nc|ENSG00000159714|Q8WTX9|ZDHHC1	nc|ENSG00000159714|Q8WTX9|ZDHHC1	nc|ENSG00000159714|Q8WTX9|ZDHHC1	MULTI-SECPEP	A375_MHC_IP_R2	2	550.1638793945312	3	550.29552	1647.86473	-0.72657	-0.00039983	2.4224	0.0013331	1.6959	0.00093323	550.632937253719	64.545	0.2039	65.285	65.157	65.361	0.74022					5	3	2	0	0	0	1.0015	1	24472	24472		0.40827	0	1	707030			62344	14704	45514	45869	60709	60709					0.06671357227946828
WTRKMKRRWER	11	Unmodified	_WTRKMKRRWER_					0	0	0			REV__ENST00000486943.1_3_X:49065690-49065852:-|nuORF	REV__ENST00000486943.1_3_X:49065690-49065852:-|nuORF	MSMS	A375_MHC_IP_R2	2	816.9808349609375	2	816.954435	1631.89432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.84	1	122.28	121.78	122.78	0.44488								0	0	0	0.1636	1	46645	46645		0	0	1		+		62345	25327	45515	45870	60710	60710					0.10364553181807423
WTRPGLELSPE	11	Unmodified	_WTRPGLELSPE_					0	0	0		nc|ENSG00000131037|Q8TE68-4|EPS8L1;ENST00000589362.5_1_19:55593317-55598979:+|nuORF;nc|ENSG00000131037|Q8TE68-3|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;ENSG00000131037|ENST00000201647|EPS8L1	nc|ENSG00000131037|Q8TE68-4|EPS8L1	nc|ENSG00000131037|Q8TE68-4|EPS8L1	MSMS	A375_MHC_IP_R2	2	428.9385986328125	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.975	1	24.605	24.105	25.105	0.63014								0	0	0	0.16182	1	7803	7803		9.2438	2.2067	1				62346	4302	45516	45871	60711	60711					0.020521672179029338
WTSLAREF	8	Unmodified	_WTSLAREF_					0	0	0			REV__ENST00000374865.4_1_9:104152475-104152511:-|nuORF	REV__ENST00000374865.4_1_9:104152475-104152511:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	504.67889404296875	2	505.258717	1008.50288	-0.60871	-0.00030755	2.0939	0.0010579	1.4852	0.00075039	505.2596455343834	84.352	0.45697	85.089	84.865	85.322	0.73647					11	8	2	0	0	0	0.92636	1	32009	32009		16.942	0	1	760410	+		62347	24117	45517	45872	60712	60712					-0.0010309924527973635
WTSPPRISTSW	11	Unmodified	_WTSPPRISTSW_					0	0	0			REV__ENST00000330914.7_1_6:30689353-30689635:+|nuORF	REV__ENST00000330914.7_1_6:30689353-30689635:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	440.2909851074219	3	439.891055	1316.65134	-0.18397	-8.0927E-05	0.0048195	2.1201E-06	-0.17915	-7.8807E-05	439.89098573494107	86.595	0.51071	87.328	86.998	87.509	0.733					20	9	3	0	0	0	0.73439	1	32968	32968		4.7159	0.83959	1	1440100	+		62348	23627	45518	45873	60713	60713					0.005675869377455456
WTSPPRISTSW	11	Unmodified	_WTSPPRISTSW_					0	0	0			REV__ENST00000330914.7_1_6:30689353-30689635:+|nuORF	REV__ENST00000330914.7_1_6:30689353-30689635:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		3	439.891055	1316.65134	-0.19003	-8.3594E-05	0.093104	4.0956E-05	-0.096929	-4.2638E-05	439.8910549763317	87.335	0.4588	87.335	87.083	87.542	0	0.0035811	3.8736E-05	NaN	4.7159	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1493600	+		62349	23627	45518	45873							0.005675869377455456
WTSPPRISTSW	11	Unmodified	_WTSPPRISTSW_					0	0	0			REV__ENST00000330914.7_1_6:30689353-30689635:+|nuORF	REV__ENST00000330914.7_1_6:30689353-30689635:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	439.891055	1316.65134	-0.18397	-8.0927E-05	0.0048195	2.1201E-06	-0.17915	-7.8807E-05	439.89098573494107	86.595	0.51071	87.328	86.998	87.509	0.733	-0.0035811	-7.7771E-05	NaN	4.7159	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1440100	+		62350	23627	45518	45873							0.005675869377455456
WTTLYYGAEG	10	Unmodified	_WTTLYYGAEG_					0	0	0			REV__ENST00000589111.5_1_19:39359746-39361880:-|nuORF	REV__ENST00000589111.5_1_19:39359746-39361880:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	582.21630859375	2	580.766571	1159.51859	-0.061163	-3.5521E-05	-0.26716	-0.00015516	-0.32832	-0.00019068	580.7664639756215	82.502	1.7751	82.502	82.011	83.786	0					93	34	4	0	0	0	0.71245	1	30658	30658		6.7232	0	1	58849000	+		62351	22062	45519	45874	60714	60714					-0.05478857518892255
WTWLDKIL	8	Unmodified	_WTWLDKIL_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF;ENST00000557199.1_1_12:56740507-56742527:-|nuORF	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MULTI-SECPEP	A375_MHC_IP_R1	1	538.2019653320312	2	537.80276	1073.59097	-0.69992	-0.00037642	-0.44176	-0.00023758	-1.1417	-0.000614	537.8026116307624	53.422	0.55876	53.422	53.199	53.758	0					24	10	3	0	0	0	0.84748	1	19036	19036		21.747	0.20967	1	5808800			62352	7523	45520	45875	60715	60715					0.057115213453243996
WVDGSHWLFN	10	Unmodified	_WVDGSHWLFN_					0	0	0			REV__SAMD9L|p.S1505F|2|0.51|ENSG00000177409|chr7:93131458-93131458|G/A|missense_variant	REV__SAMD9L|p.S1505F|2|0.51|ENSG00000177409|chr7:93131458-93131458|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	631.1922607421875	2	630.793455	1259.57236	-0.77694	-0.00049009	-1.3235	-0.00083483	-2.1004	-0.0013249	630.7925944415193	68.614	0.76226	68.614	68.006	68.769	0					32	14	3	0	0	0	0.52785	1	24880	24880		26.268	1.2772	1	3328800	+		62353	27911	45521	45876	60716	60716					-0.04704640296540674
WVDGSHWLFN	10	Unmodified	_WVDGSHWLFN_					0	0	0			REV__SAMD9L|p.S1505F|2|0.51|ENSG00000177409|chr7:93131458-93131458|G/A|missense_variant	REV__SAMD9L|p.S1505F|2|0.51|ENSG00000177409|chr7:93131458-93131458|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	631.6953735351562	2	630.793455	1259.57236	-0.61708	-0.00038925	-0.054495	-3.4375E-05	-0.67157	-0.00042362	631.2953808326831	73.196	0.45654	73.196	72.98	73.437	0					19	8	3	0	0	0	0.66308	1	26663	26663		16.149	2.2431	1	2023500	+		62354	27911	45521	45876	60717	60717					-0.04704640296540674
WVDGSHWLFN	10	Unmodified	_WVDGSHWLFN_					0	0	0			REV__SAMD9L|p.S1505F|2|0.51|ENSG00000177409|chr7:93131458-93131458|G/A|missense_variant	REV__SAMD9L|p.S1505F|2|0.51|ENSG00000177409|chr7:93131458-93131458|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	630.793455	1259.57236	-0.61708	-0.00038925	-0.054495	-3.4375E-05	-0.67157	-0.00042362	631.2953808326831	73.196	0.45654	73.196	72.98	73.437	0	-0.053684	-7.8515E-05	NaN	16.149	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2023500	+		62355	27911	45521	45876							-0.04704640296540674
WVDGSHWLFN	10	Unmodified	_WVDGSHWLFN_					0	0	0			REV__SAMD9L|p.S1505F|2|0.51|ENSG00000177409|chr7:93131458-93131458|G/A|missense_variant	REV__SAMD9L|p.S1505F|2|0.51|ENSG00000177409|chr7:93131458-93131458|G/A|missense_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	630.793455	1259.57236	-0.92905	-0.00058604	0.049316	3.1108E-05	-0.87974	-0.00055493	631.2951656007639	72.568	0.4571	73.303	73.022	73.48	0.73541	0.053684	5.2452E-05	NaN	16.149	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2637900	+		62356	27911	45521	45876							-0.04704640296540674
WVDLAWMIT	9	Unmodified	_WVDLAWMIT_					0	0	0		ENSG00000149485|ENST00000350997|FADS1;nc|ENSG00000149485|O60427|FADS1;nc|ENSG00000149485|O60427-2|FADS1	ENSG00000149485|ENST00000350997|FADS1	ENSG00000149485|ENST00000350997|FADS1	MSMS	A375_MHC_IP_R2	2	567.6995849609375	2	567.786253	1133.55795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.79	1	127.06	126.56	127.56	0.26593								0	0	0	0.15486	1	49632	49632		11.64	5.9084	1				62357	5808	45522	45877	60718	60718					-0.0034842876902985154
WVDPEDPTV	9	Unmodified	_WVDPEDPTV_					0	0	0		nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000171914|ENST00000636159|TLN2	nc|ENSG00000137076|Q9Y490-2|TLN1	MULTI-MSMS	A375_MHC_IP_R2	2	529.7058715820312	2	529.245472	1056.47639	-0.40397	-0.0002138	-1.23	-0.00065099	-1.634	-0.00086479	529.2442713063393	86.181	0.76547	86.914	86.592	87.357	0.733					34	14	3	0	0	0	0.46038	1	32859	32859		21.747	3.6117	1	4233200			62358	4857;7658	45523	45878	60719	60719					-0.04958832927286494
WVDPYEVSY	9	Unmodified	_WVDPYEVSY_					0	0	0		ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2	ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	MULTI-MSMS	A375_MHC_IP_R1	1	579.6612548828125	2	579.261122	1156.50769	-0.13656	-7.9103E-05	0.099759	5.7786E-05	-0.0368	-2.1317E-05	579.2610753973821	101.67	0.96291	101.67	101.24	102.2	0					51	18	4	0	0	0	0.01574	2	37347	37347;37399		88.904	27.546	1	22845000			62359	4518	45524	45879	60720;60721	60720					-0.06430259893204493
WVDPYEVSY	9	Unmodified	_WVDPYEVSY_					0	0	0		ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2	ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	MULTI-MSMS	A375_MHC_IP_R2	2	579.6615600585938	2	579.261122	1156.50769	-0.1324	-7.6695E-05	0.25109	0.00014544	0.11868	6.8749E-05	579.26119505077	101.12	1.277	101.89	101.39	102.67	0.76428					58	24	4	0	0	0	0.0099443	2	38295	38295;38324		120.45	59.093	1	29117000			62360	4518	45524	45879	60722;60723	60722					-0.06430259893204493
WVDSDQLLY	9	Unmodified	_WVDSDQLLY_					0	0	0		ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	MULTI-MSMS	A375_MHC_IP_R1	1	1140.26513671875	1	1138.54152	1137.53424	0.29906	0.00034049	-0.24915	-0.00028367	0.049907	5.6821E-05	1138.5414209445842	108.18	0.8627	108.18	107.8	108.66	0					37	16	3	0	0	0	0.10411	2	39662	39662;39832		49.933	26.785	1	16262000			62361	3388	45525	45880	60724;60725	60724					-0.029025710018458994
WVDSDQLLY	9	Unmodified	_WVDSDQLLY_					0	0	0		ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	MULTI-SECPEP	A375_MHC_IP_R1	1	570.1744384765625	2	569.774396	1137.53424	-0.05334	-3.0392E-05	0.28887	0.00016459	0.23553	0.0001342	569.7745153184736	108.18	1.4205	108.18	107.8	109.22	0					61	27	4	0	0	0	0.014271	1	39616	39616		112.59	30.98	1	35075000			62362	3388	45525	45880	60726	60726					-0.029025710018458994
WVDSDQLLY	9	Unmodified	_WVDSDQLLY_					0	0	0		ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	MULTI-MSMS	A375_MHC_IP_R2	2	570.1751098632812	2	569.774396	1137.53424	-0.37033	-0.000211	-0.35368	-0.00020152	-0.72401	-0.00041252	569.7741407659104	107.47	1.9373	108.23	107.74	109.68	0.75436					75	37	4	0	0	0	0.01574	1	40530	40530		88.904	27.546	1	28914000			62363	3388	45525	45880	60727	60727					-0.029025710018458994
WVDSDQLLY	9	Unmodified	_WVDSDQLLY_					0	0	0		ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	MULTI-SECPEP	A375_MHC_IP_R2	2	1138.9398193359375	1	1138.54152	1137.53424	0.08387	9.549E-05	-0.76107	-0.00086651	-0.6772	-0.00077102	1138.5403919631535	107.44	0.91741	108.19	107.84	108.76	0.75436					37	17	3	0	0	0	0.46045	1	40739	40739		36.127	14.59	1	14938000			62364	3388	45525	45880	60728	60728					-0.029025710018458994
WVEFDAGP	8	Unmodified	_WVEFDAGP_					0	0	0			REV__ENST00000507454.1_1_4:128812246-128813710:+|nuORF	REV__ENST00000507454.1_1_4:128812246-128813710:+|nuORF	MSMS	A375_MHC_IP_R1	1	460.6479187011719	2	460.711068	919.407583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.82	1	43.82	43.32	44.32	0								0	0	0	0.16876	1	15258	15258		9.3474	0.75416	1		+		62365	19322	45526	45881	60729	60729					-0.055344524363363234
WVEIGAQIYPP	11	Unmodified	_WVEIGAQIYPP_					0	0	0		SLC5A8|p.G457E|1|0.54|ENSG00000256870|chr12:101166650-101166650|C/T|missense_variant	SLC5A8|p.G457E|1|0.54|ENSG00000256870|chr12:101166650-101166650|C/T|missense_variant	SLC5A8|p.G457E|1|0.54|ENSG00000256870|chr12:101166650-101166650|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	424.2911682128906	3	424.892284	1271.65502	-0.36353	-0.00015446	-0.70034	-0.00029757	-1.0639	-0.00045203	424.89196385314784	26.896	0.51206	27.556	27.313	27.825	0.65992					16	9	3	0	0	0	0.98748	1	9158	9158		7.0371	2.9205	1	3502700			62366	29188	45527	45882	60730	60730					0.030062567116146965
WVESVTKR	8	Unmodified	_WVESVTKR_					0	0	0			REV__ENST00000590627.5_1_19:13002616-13004571:+|nuORF	REV__ENST00000590627.5_1_19:13002616-13004571:+|nuORF	MSMS	A375_MHC_IP_R2	2	502.6766662597656	2	502.779816	1003.54508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.85	1	132.04	131.54	132.54	0.18953								0	0	0	0.16876	1	51865	51865		19.439	0	1		+		62367	26404	45528	45883	60731	60731					0.04344876163088429
WVEVKGNGDD	10	Unmodified	_WVEVKGNGDD_					0	0	0			REV__ENST00000548843.1_1_12:58200052-58208006:-|nuORF	REV__ENST00000548843.1_1_12:58200052-58208006:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	373.2685852050781	3	373.508611	1117.504	0.075281	2.8118E-05	-0.20362	-7.6054E-05	-0.12834	-4.7936E-05	373.50848597346265	39.76	0.40622	39.76	39.541	39.948	0					11	7	2	0	0	0	0.93194	1	13580	13580		5.4027	0.99656	1	1567500	+		62368	18849	45529	45884	60732	60732					-0.05004929667029501
WVFKKGCENC	10	Unmodified	_WVFKKGCENC_					0	0	0			REV__ZNF510|p.R611W|1|0.34|ENSG00000081386|chr9:96758999-96758999|G/A|missense_variant	REV__ZNF510|p.R611W|1|0.34|ENSG00000081386|chr9:96758999-96758999|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	606.66943359375	2	607.278269	1212.54198	-0.7696	-0.00046736	-0.9994	-0.00060691	-1.769	-0.0010743	607.2773029865193	59.751	0.96033	60.498	59.996	60.957	0.74714					37	18	3	0	0	0	0.70651	1	22706	22706		9.3831	9.3831	1	7371700	+		62369	29043	45530	45885	60733	60733					-0.05578458277568643
WVGFRRLGPD	10	Unmodified	_WVGFRRLGPD_					0	0	0			REV__ENST00000436054.1_1_9:74920469-74956553:+|nuORF	REV__ENST00000436054.1_1_9:74920469-74956553:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	401.9525146484375	3	401.552485	1201.63563	-0.17761	-7.1321E-05	0.6574	0.00026398	0.47979	0.00019266	401.5527013947751	51.566	0.55736	51.566	51.322	51.879	0					20	10	3	0	0	0	0.94044	1	18338	18338		3.8763	0	1	3227500	+		62370	24759	45531	45886	60734	60734					0.04287345211378124
WVINIIKFY	9	Unmodified	_WVINIIKFY_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	A375_MHC_IP_R1	1	399.6335754394531	3	399.233982	1194.68012	-0.43237	-0.00017262	-0.31142	-0.00012433	-0.74379	-0.00029695	399.2337926352327	24.12	0.65949	24.12	23.838	24.498	0					28	12	3	0	0	0	0.68705	1	6771	6771		8.1555	8.1555	1	5671500			62371	2647	45532	45887	60735	60735					0.09056356304859037
WVINIIKFY	9	Unmodified	_WVINIIKFY_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MSMS	A375_MHC_IP_R1	1	399.2874450683594	3	399.233982	1194.68012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.192	1	38.192	37.692	38.692	0								0	0	0	0.15486	1	12932	12932		5.7319	2.6596	1				62372	2647	45532	45887	60736	60736					0.09056356304859037
WVKIPGPI	8	Unmodified	_WVKIPGPI_					0	0	0		ENSG00000156869|ENST00000646001|FRRS1;nc|ENSG00000156869|Q6ZNA5-2|FRRS1	ENSG00000156869|ENST00000646001|FRRS1	ENSG00000156869|ENST00000646001|FRRS1	MULTI-MSMS	A375_MHC_IP_R1	1	909.955078125	1	909.55565	908.548374	-0.48902	-0.00044479	-0.25159	-0.00022884	-0.74061	-0.00067362	909.5553467822274	147.49	1.0648	147.49	146.87	147.93	0					204	104	3	0	0	0	0.77861	1	56371	56371		0	0	1	1520500			62373	6213	45533	45888	60737	60737					0.09044171007747082
WVKIPGPI	8	Unmodified	_WVKIPGPI_					0	0	0		ENSG00000156869|ENST00000646001|FRRS1;nc|ENSG00000156869|Q6ZNA5-2|FRRS1	ENSG00000156869|ENST00000646001|FRRS1	ENSG00000156869|ENST00000646001|FRRS1	MULTI-MSMS	A375_MHC_IP_R2	2	909.9552001953125	1	909.55565	908.548374	-0.18886	-0.00017177	-0.16067	-0.00014614	-0.34952	-0.00031791	909.5554178452317	147.5	1.0439	147.52	146.94	147.98	0.019897					265	111	3	0	0	0	0.77861	1	57351	57351		0	0	1	1538200			62374	6213	45533	45888	60738	60738					0.09044171007747082
WVKIPGPI	8	Unmodified	_WVKIPGPI_					0	0	0		ENSG00000156869|ENST00000646001|FRRS1;nc|ENSG00000156869|Q6ZNA5-2|FRRS1	ENSG00000156869|ENST00000646001|FRRS1	ENSG00000156869|ENST00000646001|FRRS1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	909.55565	908.548374	-0.48902	-0.00044479	-0.25159	-0.00022884	-0.74061	-0.00067362	909.5553467822274	147.49	1.0648	147.49	146.87	147.93	0	-0.013316	-4.2161E-05	NaN	0	204	104	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1520500			62375	6213	45533	45888							0.09044171007747082
WVKIPGPI	8	Unmodified	_WVKIPGPI_					0	0	0		ENSG00000156869|ENST00000646001|FRRS1;nc|ENSG00000156869|Q6ZNA5-2|FRRS1	ENSG00000156869|ENST00000646001|FRRS1	ENSG00000156869|ENST00000646001|FRRS1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	909.55565	908.548374	-0.18886	-0.00017177	-0.16067	-0.00014614	-0.34952	-0.00031791	909.5554178452317	147.5	1.0439	147.52	146.94	147.98	0.019897	0.013316	4.0537E-05	NaN	0	265	111	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1538200			62376	6213	45533	45888							0.09044171007747082
WVKIRERPP	9	Unmodified	_WVKIRERPP_					0	0	0		ENSG00000169217|ENST00000305596|CD2BP2	ENSG00000169217|ENST00000305596|CD2BP2	ENSG00000169217|ENST00000305596|CD2BP2	MULTI-MSMS	A375_MHC_IP_R2	2	394.2833251953125	3	394.236497	1179.68766	-0.052574	-2.0727E-05	-0.96085	-0.0003788	-1.0134	-0.00039953	394.2360696362539	43.132	0.55743	43.905	43.674	44.231	0.7724					16	10	2	0	0	0	0.7235	1	15995	15995		4.897	0	1	1637300			62377	7390	45534	45889	60739	60739					0.10500508625136717
WVKSGLWIAY	10	Unmodified	_WVKSGLWIAY_					0	0	0		ENSG00000080200|ENST00000389622|CRYBG3;nc|ENSG00000080200|Q68DQ2-1|CRYBG3;nc|ENSG00000080200|Q68DQ2-2|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	MULTI-SECPEP	A375_MHC_IP_R2	2	408.6229248046875	3	408.225486	1221.65463	-0.30775	-0.00012563	0.06497	2.6522E-05	-0.24278	-9.9109E-05	408.2248551451326	20.306	1.1666	20.917	20.095	21.262	0.61029					39	22	3	0	0	0	0.83425	1	6139	6139		24.882	19.098	1	7714200			62378	1709	45535	45890	60740	60740					0.05266881782449673
WVLETKEVYR	10	Unmodified	_WVLETKEVYR_					0	0	0		ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	MULTI-MSMS	A375_MHC_IP_R1	1	442.309326171875	3	441.574955	1321.70304	-0.1282	-5.6612E-05	0.095619	4.2223E-05	-0.032585	-1.4389E-05	441.9092398596769	61.093	0.55844	61.093	60.669	61.227	0					25	10	3	0	0	0	0.7154	1	22031	22031		5.4027	0.68679	1	2829600			62379	6726	45536	45891	60741	60741					0.05505330631626748
WVLETKEVYR	10	Unmodified	_WVLETKEVYR_					0	0	0		ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	441.574955	1321.70304	-0.65691	-0.00029007	0.09797	4.3261E-05	-0.55894	-0.00024681	441.909342188765	60.308	0.61229	61.053	60.701	61.314	0.74504	-0.019841	1.1463E-06	NaN	5.4027	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2189700			62380	6726	45536	45891							0.05505330631626748
WVLWRGLLTGI	11	Unmodified	_WVLWRGLLTGI_					0	0	0		ENST00000239444.3_2_5:140557375-140557534:+|nuORF	ENST00000239444.3_2_5:140557375-140557534:+|nuORF	ENST00000239444.3_2_5:140557375-140557534:+|nuORF	MSMS	A375_MHC_IP_R1	1	438.6628723144531	3	438.595802	1312.76558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.955	1	23.955	23.455	24.455	0								0	0	0	0.1624	1	6684	6684		2.8433	0.4085	1				62381	10163	45537	45892	60742	60742					0.12170521490520514
WVMSMIESFA	10	Unmodified	_WVMSMIESFA_					0	0	0			REV__ENST00000495155.5_1_17:19186396-19216987:+|nuORF	REV__ENST00000495155.5_1_17:19186396-19216987:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	601.1757202148438	2	600.775028	1199.5355	-0.83439	-0.00050128	1.9669	0.0011817	1.1325	0.00068041	600.7760730451384	20.642	0.76004	21.252	21.059	21.819	0.61029					19	14	2	0	0	0	0.62155	1	6446	6446		19.257	1.1106	1	1392500	+		62382	16598	45538	45893	60743	60743					-0.056283962289398914
WVMSMIESFA	10	Unmodified	_WVMSMIESFA_					0	0	0			REV__ENST00000495155.5_1_17:19186396-19216987:+|nuORF	REV__ENST00000495155.5_1_17:19186396-19216987:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	600.775028	1199.5355	-0.18048	-0.00010843	1.3556	0.00081443	1.1752	0.000706	600.7758503154242	21.008	0.50722	21.008	20.844	21.352	0	-0.12199	-0.00023844	NaN	19.257	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1468500	+		62383	16598	45538	45893							-0.056283962289398914
WVMSMIESFA	10	Unmodified	_WVMSMIESFA_					0	0	0			REV__ENST00000495155.5_1_17:19186396-19216987:+|nuORF	REV__ENST00000495155.5_1_17:19186396-19216987:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	600.775028	1199.5355	-0.83439	-0.00050128	1.9669	0.0011817	1.1325	0.00068041	600.7760730451384	20.642	0.76004	21.252	21.059	21.819	0.61029	0.12199	0.00049607	NaN	19.257	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1392500	+		62384	16598	45538	45893							-0.056283962289398914
WVPGLEPV	8	Unmodified	_WVPGLEPV_					0	0	0			REV__ENST00000552421.5_1_14:75230143-75230275:+|nuORF	REV__ENST00000552421.5_1_14:75230143-75230275:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	447.9577331542969	2	448.747453	895.480354	-0.075507	-3.3883E-05	0.36129	0.00016213	0.28579	0.00012825	448.7474172979142	55.697	0.30722	55.697	55.431	55.738	0					9	5	2	0	0	0	0.972	1	19833	19833		5.7604	3.4577	1	833610	+		62385	26055	45539	45894	60744	60744					0.028433013570861476
WVPLMIAPL	9	Unmodified	_WVPLMIAPL_					0	0	0			REV__ENSG00000169992|ENST00000302926|NLGN2	REV__ENSG00000169992|ENST00000302926|NLGN2	MULTI-MSMS	A375_MHC_IP_R1	1	520.703125	2	520.304081	1038.59361	-0.80673	-0.00041975	-0.16719	-8.6987E-05	-0.97392	-0.00050673	520.3038737105741	136.17	0.30649	136.17	136	136.3	0					11	5	3	0	0	0	0.67372	1	52475	52475		9.3474	0.60203	1	1684200	+		62386	20960	45540	45895	60745	60745					0.0758565347862259
WVPLMIAPL	9	Unmodified	_WVPLMIAPL_					0	0	0			REV__ENSG00000169992|ENST00000302926|NLGN2	REV__ENSG00000169992|ENST00000302926|NLGN2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	520.304081	1038.59361	-0.80673	-0.00041975	-0.16719	-8.6987E-05	-0.97392	-0.00050673	520.3038737105741	136.17	0.30649	136.17	136	136.3	0	-0.0014186	0.00050349	NaN	9.3474	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1684200	+		62387	20960	45540	45895							0.0758565347862259
WVQENYLEY	9	Unmodified	_WVQENYLEY_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;ENSG00000156009|ENST00000286482|MAGEA8;ENST00000456494.1_3_X:148730977-148731121:-|nuORF;ENSG00000124260|ENST00000370323|MAGEA10	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;ENSG00000124260|ENST00000370323|MAGEA10	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-SECPEP	A375_MHC_IP_R1	1	622.6847534179688	2	622.285128	1242.5557	-0.39847	-0.00024796	0.33615	0.00020918	-0.062319	-3.878E-05	622.2850479661032	96.705	0.711	96.705	96.325	97.036	0					34	13	3	0	0	0	0.025235	1	35504	35504		107.19	41.952	1	8234400			62388	520;3891	45541	45896	60746	60746					-0.05587185973126907
WVQENYLEY	9	Unmodified	_WVQENYLEY_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;ENSG00000156009|ENST00000286482|MAGEA8;ENST00000456494.1_3_X:148730977-148731121:-|nuORF;ENSG00000124260|ENST00000370323|MAGEA10	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;ENSG00000124260|ENST00000370323|MAGEA10	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-MSMS	A375_MHC_IP_R2	2	622.68505859375	2	622.285128	1242.5557	-0.70872	-0.00044103	0.68737	0.00042774	-0.021349	-1.3285E-05	622.2853020274865	96.072	0.96561	96.823	96.347	97.313	0.75045					37	18	3	0	0	0	0.052747	1	36436	36436		69.105	27.265	1	6758100			62389	520;3891	45541	45896	60747	60747					-0.05587185973126907
WVQQWRASLQN	11	Unmodified	_WVQQWRASLQN_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1;REV__nc|ENSG00000127603|O94854|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MSMS	A375_MHC_IP_R1	1	708.7595825195312	2	708.362567	1414.71058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.3	1	122.3	121.8	122.8	0								0	0	0	0.16176	1	45496	45496		9.544	1.935	1		+		62390	18428;27214	45542	45897	60748	60748					0.019814829519646082
WVRFLRLAL	9	Unmodified	_WVRFLRLAL_					0	0	0			REV__ENST00000288439.9_1_17:79268976-79269057:-|nuORF	REV__ENST00000288439.9_1_17:79268976-79269057:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1174.1268310546875	1	1173.72551	1172.71823	0.3572	0.00041926	0.55642	0.00065309	0.91363	0.0010723	1173.7257859734327	146.69	0.10146	146.71	146.66	146.76	0.019897					16	7	3	0	0	0	0.77827	1	57122	57122		0	0	1	312460	+		62391	23346	45543	45898	60749	60749					0.13878287010174972
WVRKQSSRYRR	11	Unmodified	_WVRKQSSRYRR_					0	0	0		ENST00000244769.8_1_6:16301861-16302071:-|nuORF	ENST00000244769.8_1_6:16301861-16302071:-|nuORF	ENST00000244769.8_1_6:16301861-16302071:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	762.330322265625	2	761.429107	1520.84366	-0.89462	-0.00068119	1.3521	0.0010295	0.45744	0.00034831	761.9313078826209	131.15	0.30443	131.35	131.2	131.5	0.19925					10	5	3	0	0	0	0.73715	1	51603	51603		2.086	0.89267	1	7830100			62392	10183	45544	45899	60750	60750					0.10407347128443689
WVRNWILWKYF	11	Unmodified	_WVRNWILWKYF_					0	0	0		DGAT2L6|p.T77I|1|0.17|ENSG00000184210|chrX:70199845-70199845|C/T|missense_variant	DGAT2L6|p.T77I|1|0.17|ENSG00000184210|chrX:70199845-70199845|C/T|missense_variant	DGAT2L6|p.T77I|1|0.17|ENSG00000184210|chrX:70199845-70199845|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	537.1869506835938	3	537.625873	1609.85579	-0.79868	-0.00042939	1.4786	0.00079493	0.67992	0.00036554	537.6267381910377	69.913	0.40638	70.648	70.437	70.844	0.73421					14	7	2	0	0	0	1.0014	1	26562	26562		0.45452	0.38125	1	2535500			62393	737	45545	45900	60751	60751					0.07525570818916094
WVRPVAFGRY	10	Unmodified	_WVRPVAFGRY_					0	0	0			REV__ENST00000299613.10_1_11:9596239-9596734:+|nuORF	REV__ENST00000299613.10_1_11:9596239-9596734:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	417.96405029296875	3	417.564614	1249.67201	0.038287	1.5987E-05	-1.3416	-0.00056021	-1.3033	-0.00054423	417.56408230843823	27.102	0.25189	27.102	26.978	27.229	0					8	4	2	0	0	0	0.70174	1	8215	8215		11.518	6.3194	1	2616600	+		62394	23408	45546	45901	60752	60752					0.05716222108094371
WVRPVAFGRY	10	Unmodified	_WVRPVAFGRY_					0	0	0			REV__ENST00000299613.10_1_11:9596239-9596734:+|nuORF	REV__ENST00000299613.10_1_11:9596239-9596734:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	417.564614	1249.67201	0.038287	1.5987E-05	-1.3416	-0.00056021	-1.3033	-0.00054423	417.56408230843823	27.102	0.25189	27.102	26.978	27.229	0	0.026034	-0.0004286	NaN	11.518	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2616600	+		62395	23408	45546	45901							0.05716222108094371
WVRPVAFGRY	10	Unmodified	_WVRPVAFGRY_					0	0	0			REV__ENST00000299613.10_1_11:9596239-9596734:+|nuORF	REV__ENST00000299613.10_1_11:9596239-9596734:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	417.564614	1249.67201	-0.43629	-0.00018218	-0.86523	-0.00036129	-1.3015	-0.00054347	417.56428821691634	26.39	0.30449	27.05	26.907	27.212	0.65992	-0.026034	0.00016818	NaN	11.518	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2850700	+		62396	23408	45546	45901							0.05716222108094371
WVRQRRLP	8	Unmodified	_WVRQRRLP_					0	0	0			REV__ENST00000529382.5_2_11:236772-236832:-|nuORF	REV__ENST00000529382.5_2_11:236772-236832:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	371.292724609375	3	370.892953	1109.65703	-0.059935	-2.223E-05	-0.44521	-0.00016512	-0.50514	-0.00018735	370.8928043142635	25.255	0.3086	25.898	25.719	26.028	0.64368					9	5	2	0	0	0	0.972	1	8439	8439		4.3292	0.38484	1	8660000	+		62397	25821	45547	45902	60753	60753					0.10658775030742618
WVRRLQSVL	9	Unmodified	_WVRRLQSVL_					0	0	0			REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	A375_MHC_IP_R1	1	385.6446533203125	3	386.236497	1155.68766	0.35151	0.00013577	0.24981	9.6486E-05	0.60132	0.00023225	386.23653531127064	56.662	0.40724	56.662	56.447	56.855	0					11	7	2	0	0	0	0.76827	1	20325	20325		7.1017	7.1017	1	901240	+		62398	22186	45548	45903	60754	60754					0.11604508625123344
WVRVPVRVR	9	Unmodified	_WVRVPVRVR_					0	0	0			REV__ENST00000374431.7_1_9:113735800-113800319:-|nuORF	REV__ENST00000374431.7_1_9:113735800-113800319:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	389.98040771484375	3	389.580487	1165.71963	-0.6944	-0.00027052	0.4707	0.00018338	-0.2237	-8.7148E-05	389.58068257914164	52.912	0.45617	53.663	53.487	53.944	0.75105					13	8	2	0	0	0	0.74768	1	19997	19997		2.7352	0	1	1759300	+		62399	24107	45549	45904	60755	60755					0.14339921098940067
WVVIGAAG	8	Unmodified	_WVVIGAAG_					0	0	0			REV__HYAL4|p.I338V|1|0.14|ENSG00000106302|chr7:123874818-123874818|A/G|missense_variant	REV__HYAL4|p.I338V|1|0.14|ENSG00000106302|chr7:123874818-123874818|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	387.44537353515625	2	386.721239	771.427924	-0.4022	-0.00015554	1.1128	0.00043033	0.71056	0.00027479	386.72149090662526	38.118	0.6153	38.892	38.534	39.149	0.77451					19	11	2	0	0	0	0.972	1	13926	13926		6.3541	0	1	1753400	+		62400	26770	45550	45905	60756	60756					0.03306763014131775
WVVVGAPQKI	10	Unmodified	_WVVVGAPQKI_					0	0	0		ENSG00000140678|ENST00000268296|ITGAX;ENST00000567409.1_1_16:31366575-31368500:+|nuORF;ITGAX|p.T58K|1|0.36|ENSG00000140678|chr16:31356654-31356654|C/A|missense_variant	ENSG00000140678|ENST00000268296|ITGAX	ENSG00000140678|ENST00000268296|ITGAX	MULTI-SECPEP	A375_MHC_IP_R2	2	366.6217346191406	3	366.221965	1095.64407	0.061609	2.2563E-05	-0.3058	-0.00011199	-0.24419	-8.9428E-05	366.2218153671504	32.329	0.35609	33.066	32.857	33.213	0.73692					9	6	2	0	0	0	0.85215	1	11545	11545		17.443	6.6431	1	3517300			62401	5176	45551	45906	60757	60757					0.1000689912798407
WVWLLWLSFEY	11	Unmodified	_WVWLLWLSFEY_					0	0	0		ENST00000422090.2_1_19:50411206-50411455:-|nuORF	ENST00000422090.2_1_19:50411206-50411455:-|nuORF	ENST00000422090.2_1_19:50411206-50411455:-|nuORF	MSMS	A375_MHC_IP_R1	1	771.7923583984375	2	771.395013	1540.77547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.53	1	144.53	144.03	145.03	0								0	0	0	0.16354	1	55423	55423		0.30703	0.30703	1				62402	11745	45552	45907	60758	60758					0.02671664705258081
WVYNHYRWIIW	11	Unmodified	_WVYNHYRWIIW_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	MULTI-SECPEP	A375_MHC_IP_R2	2	818.814697265625	2	818.414603	1634.81465	-0.82031	-0.00067135	0.15389	0.00012595	-0.66641	-0.0005454	818.4150336891415	131.2	0.30499	131.39	131.24	131.54	0.18953					8	5	3	0	0	0	1.0015	1	51632	51632		0.30703	0	1	3965600			62403	5090	45553	45908	60759	60759					0.022638097794470013
WWFERQKRKLL	11	Unmodified	_WWFERQKRKLL_					0	0	0			REV__nc|ENSG00000082126|Q96JB8-5|MPP4	REV__nc|ENSG00000082126|Q96JB8-5|MPP4	MSMS	A375_MHC_IP_R1	1	530.6771850585938	3	530.640294	1588.89905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.198	1	69.198	68.698	69.698	0								0	0	0	0.16358	1	25107	25107		0.094841	0	1		+		62404	16785	45554	45909	60760	60760					0.1281576059618601
WWFWLERRRWL	11	Unmodified	_WWFWLERRRWL_					0	0	0			REV__ENST00000246635.7_1_17:39661629-39661743:-|nuORF	REV__ENST00000246635.7_1_17:39661629-39661743:-|nuORF	MSMS	A375_MHC_IP_R1	1	578.775390625	3	578.644038	1732.91028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.7	1	110.7	110.2	111.2	0								0	0	0	0.16358	1	40587	40587		0.094841	0.094841	1		+		62405	23113	45555	45910	60761	60761					0.07314582690332827
WWFYDDYFTYF	11	Unmodified	_WWFYDDYFTYF_					0	0	0			REV__ENST00000453386.6_1_3:185635356-185635488:-|nuORF	REV__ENST00000453386.6_1_3:185635356-185635488:-|nuORF	MSMS	A375_MHC_IP_R2	2	551.6455078125	3	551.562604	1651.66598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.04	1	23.67	23.17	24.17	0.63014								0	0	0	0.1636	1	7362	7362		0	0	1		+		62406	24908	45556	45911	60762	60762					-0.13378385704800166
WWFYWQINKY	10	Unmodified	_WWFYWQINKY_					0	0	0			REV__tr|U7SKK3|U7SKK3_FUSNUDUF4253domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02059PE=4SV=1	REV__tr|U7SKK3|U7SKK3_FUSNUDUF4253domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02059PE=4SV=1	MSMS	A375_MHC_IP_R2	2	511.9882507324219	3	511.915312	1532.72411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.114	1	39.889	39.389	40.389	0.77451								0	0	0	0.1562	1	14428	14428		0.69767	0.19171	1		+		62407	28256	45557	45912	60763	60763					-0.020946592688233068
WWGQWYSF	8	Unmodified	_WWGQWYSF_					0	0	0			REV__ENSG00000149050|ENST00000278314|ZNF214	REV__ENSG00000149050|ENST00000278314|ZNF214	MULTI-MSMS	A375_MHC_IP_R1	1	580.6534423828125	2	580.253434	1158.49232	-0.083269	-4.8317E-05	0.22405	0.00013001	0.14079	8.1691E-05	580.2534116258267	53.766	0.55911	53.766	53.453	54.013	0					20	10	3	0	0	0	0.7754	1	19183	19183		11.64	11.64	1	4006300	+		62408	19656	45558	45913	60764	60764					-0.08059081899750709
WWGQWYSF	8	Unmodified	_WWGQWYSF_					0	0	0			REV__ENSG00000149050|ENST00000278314|ZNF214	REV__ENSG00000149050|ENST00000278314|ZNF214	MULTI-MSMS	A375_MHC_IP_R2	2	580.6529541015625	2	580.253434	1158.49232	-0.83738	-0.0004859	0.0098515	5.7164E-06	-0.82753	-0.00048018	580.2534546740039	52.963	0.55832	53.714	53.487	54.046	0.75105					15	10	2	0	0	0	0.77643	1	19984	19984		7.9102	0	1	3571700	+		62409	19656	45558	45913	60765	60765					-0.08059081899750709
WWHHFWVP	8	Unmodified	_WWHHFWVP_					0	0	0		ENST00000412626.2_1_9:67272267-67281749:-|nuORF	ENST00000412626.2_1_9:67272267-67281749:-|nuORF	ENST00000412626.2_1_9:67272267-67281749:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	398.5875549316406	3	398.859249	1193.55592	-0.39848	-0.00015894	-1.5996	-0.000638	-1.998	-0.00079694	398.8584968550199	20.753	0.86193	21.364	20.855	21.717	0.61029					38	16	4	0	0	0	0.972	1	6551	6551		4.3292	0	1	2365800			62410	11650	45559	45914	60766	60766					-0.03311676671978603
WWILLCIFTY	10	Unmodified	_WWILLCIFTY_					0	0	0		nc|ENSG00000144339|Q9UIK5-3|TMEFF2	nc|ENSG00000144339|Q9UIK5-3|TMEFF2	nc|ENSG00000144339|Q9UIK5-3|TMEFF2	MULTI-MSMS	A375_MHC_IP_R1	1	453.6384582519531	3	453.238627	1356.69405	0.030767	1.3945E-05	0.44898	0.00020349	0.47974	0.00021744	453.23810963918345	21.392	0.35667	21.392	21.148	21.505	0					16	6	4	0	0	0	0.70329	1	5625	5625		6.1918	0.32371	1	2238500			62411	14659	45560	45915	60767	60767					0.029972657416010406
WWILLCIFTY	10	Unmodified	_WWILLCIFTY_					0	0	0		nc|ENSG00000144339|Q9UIK5-3|TMEFF2	nc|ENSG00000144339|Q9UIK5-3|TMEFF2	nc|ENSG00000144339|Q9UIK5-3|TMEFF2	MULTI-MATCH	A375_MHC_IP_R2	2		3	453.238627	1356.69405	-0.57501	-0.00026062	-1.2292	-0.00055712	-1.8042	-0.00081773	453.2381048689287	20.88	0.20431	21.49	21.362	21.566	0.61029	0.049004	-0.00019746	NaN	6.1918	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1542100			62412	14659	45560	45915							0.029972657416010406
WWIWWQWWKLQ	11	Unmodified	_WWIWWQWWKLQ_					0	0	0		chr12:54282841-54283827|472|22.72|0.0|21.12|+|1|HNRNPA1,HNRNPA1|1	chr12:54282841-54283827|472|22.72|0.0|21.12|+|1|HNRNPA1,HNRNPA1|1	chr12:54282841-54283827|472|22.72|0.0|21.12|+|1|HNRNPA1,HNRNPA1|1	MSMS	A375_MHC_IP_R1	1	582.7283935546875	3	582.629506	1744.86669	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.355	1	92.355	91.855	92.855	0								0	0	0	0.1636	1	33941	33941		0	0	1				62413	414	45561	45916	60768	60768					0.02404973193188198
WWMGAEEPW	9	Unmodified	_WWMGAEEPW_					0	0	0		ENSG00000099821|ENST00000588649|POLRMT;ENST00000578759.1_1_17:60214444-60217453:-|nuORF	ENSG00000099821|ENST00000588649|POLRMT	ENSG00000099821|ENST00000588649|POLRMT	MULTI-SECPEP	A375_MHC_IP_R1	1	595.97412109375	2	596.250034	1190.48552	-0.42205	-0.00025165	0.3129	0.00018657	-0.10915	-6.5079E-05	596.7529499277583	87.619	0.4576	87.619	87.441	87.898	0					11	8	2	0	0	0	0.77834	1	32124	32124		8.5933	0.68312	1	1904300			62414	2087	45562	45917	60769	60769					-0.10210762842598342
WWNKRQRLVEH	11	Unmodified	_WWNKRQRLVEH_					0	0	0			REV__ENSG00000145723|ENST00000399004|GIN1	REV__ENSG00000145723|ENST00000399004|GIN1	MSMS	A375_MHC_IP_R2	2	776.3748168945312	2	776.418208	1550.82186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.05	1	119.62	119.12	120.12	0.5637								0	0	0	0.16297	1	45302	45302		3.2813	1.9518	1		+		62415	19488	45563	45918	60770	60770					0.0684854237986201
WWPQWWLWRY	10	Unmodified	_WWPQWWLWRY_					0	0	0			REV__chr12:54282823-54283812|100|241.53|0.0|24.53|+|1|HNRNPA1,HNRNPA1|1;REV__chr12:54282823-54283827|472|43.37|0.0|22.05|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54282823-54283812|100|241.53|0.0|24.53|+|1|HNRNPA1,HNRNPA1|1	MULTI-MSMS	A375_MHC_IP_R1	1	536.6422729492188	3	536.262935	1605.76697	-0.9753	-0.00052302	-0.47737	-0.00025599	-1.4527	-0.00077901	536.2625273124745	23.843	0.76238	23.843	23.432	24.194	0					21	14	2	0	0	0	0.72321	1	6607	6607		1.9064	0.69154	1	2317400	+		62416	15691;15692	45564	45919	60771	60771					-0.011678444207518623
WWQWWIWWWWP	11	Unmodified	_WWQWWIWWWWP_					0	0	0			REV__chr12:54282841-54283827|472|22.72|0.0|21.12|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54282841-54283827|472|22.72|0.0|21.12|+|1|HNRNPA1,HNRNPA1|1	MSMS	A375_MHC_IP_R2	2	923.5576782226562	2	923.427513	1844.84047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.45	1	105.21	104.71	105.71	0.76308								0	0	0	0.1636	1	39518	39518		0	0	1		+		62417	15693	45565	45920	60772	60772					-0.048152959782783
WWQWWIWWWWP	11	Unmodified	_WWQWWIWWWWP_					0	0	0			REV__chr12:54282841-54283827|472|22.72|0.0|21.12|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54282841-54283827|472|22.72|0.0|21.12|+|1|HNRNPA1,HNRNPA1|1	MSMS	A375_MHC_IP_R2	2	923.4649658203125	2	923.427513	1844.84047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.48	1	107.24	106.74	107.74	0.75977								0	0	0	0.1636	1	40246	40246		0	0	1		+		62418	15693	45565	45920	60773	60773					-0.048152959782783
WWRKILKYFWM	11	Unmodified	_WWRKILKYFWM_					0	0	0		nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2	nc|ENSG00000154864|Q9H5I5-4|PIEZO2	nc|ENSG00000154864|Q9H5I5-4|PIEZO2	MULTI-MSMS	A375_MHC_IP_R2	2	552.6923217773438	3	552.967242	1655.8799	-0.64891	-0.00035882	-3.119	-0.0017247	-3.7679	-0.0020835	553.2995100915052	135.19	0.86377	135.33	134.95	135.81	0.13901					26	16	2	0	0	0	0.73925	1	53170	53170		0.08335	0.08335	1	9961400			62419	6114	45566	45921	60774	60774					0.07819087980919903
WWRLILSKILK	11	Unmodified	_WWRLILSKILK_					0	0	0		ENSG00000173389|ENST00000310914|IQCF1	ENSG00000173389|ENST00000310914|IQCF1	ENSG00000173389|ENST00000310914|IQCF1	MSMS	A375_MHC_IP_R2	2	728.5418701171875	2	728.463564	1454.91258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.229	1	87.962	87.462	88.462	0.733								0	0	0	0.16337	1	33172	33172		1.1933	0.12188	1				62420	7793	45567	45922	60775	60775					0.20331618375462313
WWRRPRRPRRL	11	Unmodified	_WWRRPRRPRRL_					0	0	0			REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF	REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	546.0625610351562	3	545.662426	1633.96545	-0.85836	-0.00046838	-1.0836	-0.00059129	-1.942	-0.0010597	545.6622126079494	137.53	1.5833	137.53	137.18	138.76	0					56	30	3	0	0	0	0.73934	2	52942	52942;53019		0	0	1	1531200	+		62421	24056	45568	45923	60776;60777	60776					0.17382434001456204
WWRRRRLRAR	10	Unmodified	_WWRRRRLRAR_					0	0	0		ENST00000521399.5_1_8:67834613-67837726:-|nuORF;ENST00000520944.5_1_8:67834940-67837798:-|nuORF	ENST00000521399.5_1_8:67834613-67837726:-|nuORF	ENST00000521399.5_1_8:67834613-67837726:-|nuORF	MSMS	A375_MHC_IP_R2	2	756.4590454101562	2	756.455794	1510.89703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.906	1	92.644	92.144	93.144	0.73774								0	0	0	0.15629	1	34953	34953		0.40072	0.050084	1				62422	13003	45569	45924	60778	60778					0.1620218942161955
WWRRRRRSISR	11	Unmodified	_WWRRRRRSISR_					0	0	0		ENSG00000154736|ENST00000284987|ADAMTS5	ENSG00000154736|ENST00000284987|ADAMTS5	ENSG00000154736|ENST00000284987|ADAMTS5	MULTI-SECPEP	A375_MHC_IP_R1	1	539.231689453125	3	538.981936	1613.92398	-0.70079	-0.00037771	0.92096	0.00049638	0.22017	0.00011867	538.9823821962298	58.157	0.50611	58.157	57.822	58.328	0					21	9	3	0	0	0	1.0008	1	20877	20877		2.084	1.6757	1	3724100			62423	6104	45570	45925	60779	60779					0.1415725324216055
WWRRRWNPRLP	11	Unmodified	_WWRRRWNPRLP_					0	0	0		ENST00000463462.5_1_7:148982563-148988696:+|nuORF;ENST00000426347.5_1_7:148982610-148985528:+|nuORF;ENST00000481817.5_1_7:148984700-148990670:+|nuORF	ENST00000463462.5_1_7:148982563-148988696:+|nuORF	ENST00000463462.5_1_7:148982563-148988696:+|nuORF	MSMS	A375_MHC_IP_R2	2	811.8877563476562	2	811.95001	1621.88547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.71	1	125.04	124.54	125.54	0.32969								0	0	0	0.16337	1	48313	48313		1.1933	0.88631	1				62424	11804	45571	45926	60780	60780					0.09939947607631439
WWRRWRARRQP	11	Unmodified	_WWRRWRARRQP_					0	0	0			REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF	REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF	MSMS	A375_MHC_IP_R2	2	827.4591064453125	2	827.458533	1652.90251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.364	1	100.12	99.624	100.62	0.75977								0	0	0	0.16354	1	37692	37692		0.30703	0	1		+		62425	24039	45572	45927	60781	60781					0.10217868213430847
WWRTSRTWLQ	10	Unmodified	_WWRTSRTWLQ_					0	0	0		ENST00000589707.5_1_19:44732617-44732743:+|nuORF;ENST00000588219.5_1_19:44732617-44738899:+|nuORF	ENST00000589707.5_1_19:44732617-44732743:+|nuORF	ENST00000589707.5_1_19:44732617-44732743:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	474.33502197265625	3	473.914194	1418.72075	-0.71455	-0.00033863	1.5695	0.0007438	0.85493	0.00040516	473.914675201208	132.37	0.70796	132.37	132.03	132.74	0					15	13	2	0	0	0	0.94755	1	51021	51021		3.0723	3.0723	1	2754800			62426	13758	45573	45928	60782	60782					0.028140906771795926
WWRVHRRGFKC	11	Unmodified	_WWRVHRRGFKC_					0	0	0			REV__ENST00000542104.5_2_12:65089076-65089520:+|nuORF	REV__ENST00000542104.5_2_12:65089076-65089520:+|nuORF	MSMS	A375_MHC_IP_R1	1	765.9043579101562	2	765.904214	1529.79387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.89	1	144.89	144.39	145.39	0								0	0	0	0.16354	1	55552	55552		0.30703	0	1		+		62427	25962	45574	45929	60783	60783					0.05016940918767432
WWRWRRARWQP	11	Unmodified	_WWRWRRARWQP_					0	0	0		nc|ENSG00000171160|Q8NDC4-2|MORN4	nc|ENSG00000171160|Q8NDC4-2|MORN4	nc|ENSG00000171160|Q8NDC4-2|MORN4	MSMS	A375_MHC_IP_R2	2	842.8495483398438	2	842.447634	1682.88072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.49	1	139.55	139.05	140.05	0.059906								0	0	0	0.1636	1	54648	54648		0	0	1				62428	14767	45575	45930	60784	60784					0.06659063464871906
WWRWSWWWLKW	11	Unmodified	_WWRWSWWWLKW_					0	0	0			REV__chr12:54282611-54283827|472|64.71|0.0|22.63|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54282611-54283827|472|64.71|0.0|22.63|+|1|HNRNPA1,HNRNPA1|1	MULTI-SECPEP	A375_MHC_IP_R2	2	602.2056274414062	3	602.63325	1804.87792	-0.36369	-0.00021917	-1.9781	-0.0011921	-2.3418	-0.0014113	602.9666117088339	68.584	0.20141	69.319	69.171	69.373	0.73512					5	3	2	0	0	0	1.0015	1	25960	25960		0.40827	0	1	882270	+		62429	15689	45576	45931	60785	60785					0.007677952873336835
WWSACLRRWCK	11	Unmodified	_WWSACLRRWCK_					0	0	0		ENST00000481150.1_1_6:90717961-90718406:-|nuORF	ENST00000481150.1_1_6:90717961-90718406:-|nuORF	ENST00000481150.1_1_6:90717961-90718406:-|nuORF	MSMS	A375_MHC_IP_R2	2	747.8672485351562	2	747.865908	1493.71726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.71	1	144.74	144.24	145.24	0.021744								0	0	0	0.16354	1	56519	56519		0.30703	0	1				62430	12510	45577	45932	60786	60786					-0.009846186927006784
WWTKTKFYA	9	Unmodified	_WWTKTKFYA_					0	0	0			REV__nc|ENSG00000001461|Q6P499-3|NIPAL3	REV__nc|ENSG00000001461|Q6P499-3|NIPAL3	MULTI-MSMS	A375_MHC_IP_R1	1	411.28094482421875	3	410.88172	1229.62333	0.1793	7.3671E-05	-1.5333	-0.00063002	-1.354	-0.00055635	410.8808090295475	20.484	1.0689	20.484	19.827	20.895	0					27	18	2	0	0	0	0.44183	1	5280	5280		22.658	7.1196	1	8723000	+		62431	16082	45578	45933	60787	60787					0.017703087483369018
WWTRNWWWFSE	11	Unmodified	_WWTRNWWWFSE_					0	0	0		ENST00000573520.5_1_16:4521405-4524561:-|nuORF;ENST00000571291.5_1_16:4519639-4524561:-|nuORF;ENST00000283429.10_1_16:4519403-4524606:-|nuORF;ENST00000404295.7_1_16:4519400-4524561:-|nuORF;ENST00000574733.5_1_16:4519403-4524387:-|nuORF	ENST00000573520.5_1_16:4521405-4524561:-|nuORF	ENST00000573520.5_1_16:4521405-4524561:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	842.7786865234375	2	842.378217	1682.74188	0.095687	8.0605E-05	-0.31996	-0.00026952	-0.22427	-0.00018892	842.3780448972436	69.28	0.35722	69.28	69.07	69.427	0					13	6	3	0	0	0	0.73934	1	25179	25179		0	0	1	2312400			62432	10438	45579	45934	60788	60788					-0.0721794401401894
WWWFLHKFRPD	11	Unmodified	_WWWFLHKFRPD_					0	0	0		ENSG00000166262|ENST00000299338|FAM227B	ENSG00000166262|ENST00000299338|FAM227B	ENSG00000166262|ENST00000299338|FAM227B	MSMS	A375_MHC_IP_R2	2	809.7710571289062	2	809.409321	1616.80409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.3	1	144.33	143.83	144.83	0.024414								0	0	0	0.1636	1	56370	56370		0	0	1				62433	7051	45580	45935	60789	60789					0.020358271249961035
WWWPQWWLWR	10	Unmodified	_WWWPQWWLWR_					0	0	0			REV__chr12:54282823-54283827|472|43.37|0.0|22.05|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54282823-54283827|472|43.37|0.0|22.05|+|1|HNRNPA1,HNRNPA1|1	MSMS	A375_MHC_IP_R2	2	815.3746337890625	2	815.398756	1628.78296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.77	1	127.03	126.53	127.53	0.26593								0	0	0	0.15629	1	49624	49624		0.40072	0.050084	1		+		62434	15692	45581	45936	60790	60790					-0.00628138183833471
WWWRPWWSRLV	11	Unmodified	_WWWRPWWSRLV_					0	0	0			REV__ENST00000355943.7_1_5:110074744-110074849:+|nuORF	REV__ENST00000355943.7_1_5:110074744-110074849:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	829.829345703125	2	829.430587	1656.84662	-0.78392	-0.0006502	-1.4278	-0.0011843	-2.2117	-0.0018345	829.4296787790505	130.57	0.25427	130.78	130.7	130.96	0.2142					6	4	2	0	0	0	0.99955	1	51365	51365		0.26902	0	1	21959000	+		62435	23825	45582	45937	60791	60791					0.044472222532476735
WWWRRRRRHRG	11	Unmodified	_WWWRRRRRHRG_					0	0	0		ENST00000475204.5_1_1:70687068-70687435:+|nuORF;ENST00000370951.5_1_1:70671397-70687435:+|nuORF;ENST00000463877.1_1_1:70671397-70687435:+|nuORF;ENST00000395136.6_2_1:70687096-70687432:+|nuORF	ENST00000475204.5_1_1:70687068-70687435:+|nuORF	ENST00000475204.5_1_1:70687068-70687435:+|nuORF	MSMS	A375_MHC_IP_R2	2	854.8710327148438	2	854.475049	1706.93555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.53	1	101.3	100.8	101.8	0.76278								0	0	0	0.1636	1	38119	38119		0	0	1				62436	11161	45583	45938	60792	60792					0.11035495056103173
WWWSWRWWKLQ	11	Unmodified	_WWWSWRWWKLQ_					0	0	0		chr12:54282611-54283827|472|64.71|0.0|22.63|+|1|HNRNPA1,HNRNPA1|1	chr12:54282611-54283827|472|64.71|0.0|22.63|+|1|HNRNPA1,HNRNPA1|1	chr12:54282611-54283827|472|64.71|0.0|22.63|+|1|HNRNPA1,HNRNPA1|1	MSMS	A375_MHC_IP_R1	1	874.046875	2	874.43587	1746.85719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.153	1	81.153	80.653	81.653	0								0	0	0	0.1636	1	29653	29653		0	0	1				62437	410	45584	45939	60793	60793					0.013632049076704789
WWYFRKYGTSL	11	Unmodified	_WWYFRKYGTSL_					0	0	0		ST7|p.F92L|1|0.06|ENSG00000004866|chr7:117119602-117119602|C/G|missense_variant	ST7|p.F92L|1|0.06|ENSG00000004866|chr7:117119602-117119602|C/G|missense_variant	ST7|p.F92L|1|0.06|ENSG00000004866|chr7:117119602-117119602|C/G|missense_variant	MSMS	A375_MHC_IP_R2	2	502.7108154296875	3	502.922467	1505.74557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.372	1	90.104	89.604	90.604	0.7318								0	0	0	0.16334	1	34011	34011		1.3296	0	1				62438	29255	45585	45940	60794	60794					0.012927257598903452
WWYRWWCVFPW	11	Unmodified	_WWYRWWCVFPW_					0	0	0			REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF	REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF	MSMS	A375_MHC_IP_R1	1	857.9135131835938	2	857.892449	1713.77035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.74	1	124.74	124.24	125.24	0								0	0	0	0.1636	1	47096	47096		0	0	1		+		62439	24479	45586	45941	60795	60795					-0.057989176383898666
WYEWYRWRRCY	11	Unmodified	_WYEWYRWRRCY_					0	0	0			REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF	REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF	MSMS	A375_MHC_IP_R1	1	589.6028442382812	3	589.605143	1765.7936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.12	1	114.12	113.62	114.62	0								0	0	0	0.16358	1	41838	41838		0.094841	0.094841	1		+		62440	23404	45587	45942	60796	60796					-0.05866523591703299
WYEWYRWRRCY	11	Unmodified	_WYEWYRWRRCY_					0	0	0			REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF	REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF	MSMS	A375_MHC_IP_R2	2	589.6052856445312	3	589.605143	1765.7936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.59	1	122.97	122.47	123.47	0.3766								0	0	0	0.16358	1	47006	47006		0.094841	0.094841	1		+		62441	23404	45587	45942	60797	60797					-0.05866523591703299
WYFRRQHKKRR	11	Unmodified	_WYFRRQHKKRR_					0	0	0			REV__XKR6|p.E271K|1|0.28|ENSG00000171044|chr8:10924784-10924784|C/T|missense_variant	REV__XKR6|p.E271K|1|0.28|ENSG00000171044|chr8:10924784-10924784|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	415.87591552734375	4	415.990646	1659.93348	0.40354	0.00016787	-0.17262	-7.1808E-05	0.23092	9.6062E-05	415.9906219681701	20.613	0.56135	20.613	20.283	20.844	0					24	10	3	0	0	0	1.0015	1	5359	5359		0	0	1	2500300	+		62442	29004	45588	45943	60798	60798					0.12991021527636804
WYFSLELIYYY	11	Unmodified	_WYFSLELIYYY_					0	0	0			REV__ENSG00000172292|ENST00000305747|CERS6	REV__ENSG00000172292|ENST00000305747|CERS6	MSMS	A375_MHC_IP_R1	1	520.6640014648438	3	520.58675	1558.73842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.54	1	65.54	65.04	66.04	0								0	0	0	0.16331	1	23730	23730		0.50596	0.051438	1		+		62443	21134	45589	45944	60799	60799					-0.018600516311835236
WYFWRRHVFIW	11	Unmodified	_WYFWRRHVFIW_					0	0	0		ENSG00000187688|ENST00000338560|TRPV2;ENST00000441875.1_1_17:16330801-16331912:+|nuORF	ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	MULTI-SECPEP	A375_MHC_IP_R2	2	565.726806640625	3	565.961367	1694.86227	-0.6185	-0.00035005	-0.27177	-0.00015381	-0.89027	-0.00050386	565.9612748272818	54.594	0.45778	55.345	55.169	55.626	0.75075					12	8	2	0	0	0	1.0015	1	20691	20691		0	0	1	1693100			62444	8849	45590	45945	60800	60800					0.042635087702819874
WYIFMKYLFYY	11	Unmodified	_WYIFMKYLFYY_					0	0	0		ENST00000496524.5_1_2:110889257-110901337:-|nuORF	ENST00000496524.5_1_2:110889257-110901337:-|nuORF	ENST00000496524.5_1_2:110889257-110901337:-|nuORF	MSMS	A375_MHC_IP_R2	2	818.937744140625	2	818.899074	1635.7836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.09	1	125.39	124.89	125.89	0.30163								0	0	0	0.16354	1	48608	48608		0.30703	0	1				62445	12727	45591	45946	60801	60801					-0.00886524369639119
WYKDLRHYYY	10	Unmodified	_WYKDLRHYYY_					0	0	0		ENSG00000181523|ENST00000326317|SGSH	ENSG00000181523|ENST00000326317|SGSH	ENSG00000181523|ENST00000326317|SGSH	MULTI-SECPEP	A375_MHC_IP_R1	1	503.3104248046875	3	502.910338	1505.70918	-0.67988	-0.00034192	1.101	0.00055371	0.42113	0.00021179	502.91093386270813	23.592	0.25504	23.592	23.432	23.687	0					6	4	2	0	0	0	0.94859	1	6551	6551		2.086	0.63089	1	5886400			62446	8350	45592	45947	60802	60802					-0.023441511368218926
WYKRVKKKKEH	11	Unmodified	_WYKRVKKKKEH_					0	0	0			REV__nc|ENSG00000063244|P26368-2|U2AF2	REV__nc|ENSG00000063244|P26368-2|U2AF2	MSMS	A375_MHC_IP_R1	1	765.4567260742188	2	765.456802	1528.89905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.57	1	120.57	120.07	121.07	0								0	0	0	0.16353	1	44681	44681		0.35063	0	1		+		62447	16467	45593	45948	60803	60803					0.15575760596198052
WYKYQPLDLVR	11	Unmodified	_WYKYQPLDLVR_					0	0	0		nc|ENSG00000151572|Q32M45-2|ANO4;ENSG00000151572|ENST00000392977|ANO4;chr12:100740105-100901646|285|19.07|0.2|6.56|+|ENST00000644049|ANO4,ANO4;chr12:100733857-100739854|304|19.0|0.22|6.42|+|ENST00000644049|ANO4,ANO4;chr12:100717547-100733774|256|11.42|0.12|6.52|+|ENST00000644049|ANO4,ANO4	nc|ENSG00000151572|Q32M45-2|ANO4	nc|ENSG00000151572|Q32M45-2|ANO4	MULTI-MSMS	A375_MHC_IP_R2	2	740.80029296875	2	740.900994	1479.78744	-0.64273	-0.0004762	2.1623	0.0016021	1.5196	0.0011259	740.903146609229	94.234	0.25329	94.978	94.818	95.071	0.74473					8	4	2	0	0	0	0.73647	1	35824	35824		2.7352	0	1	1231300			62448	407	45594	45949	60804	60804					0.0667328144838848
WYLWRKRKREN	11	Unmodified	_WYLWRKRKREN_					0	0	0			REV__ENSG00000175354|ENST00000309660|PTPN2	REV__ENSG00000175354|ENST00000309660|PTPN2	MULTI-SECPEP	A375_MHC_IP_R2	2	546.0601806640625	3	545.639064	1633.89536	-0.68236	-0.00037232	2.0936	0.0011424	1.4113	0.00077005	545.9745423220244	134.89	0.55783	135.03	134.75	135.31	0.13901					17	10	2	0	0	0	1.0015	1	52962	52962		0.08335	0.08335	1	1919500	+		62449	21340	45595	45950	60805	60805					0.10377090822339596
WYLWRKRKREN	11	Unmodified	_WYLWRKRKREN_					0	0	0			REV__ENSG00000175354|ENST00000309660|PTPN2	REV__ENSG00000175354|ENST00000309660|PTPN2	MULTI-MATCH	A375_MHC_IP_R1	1		3	545.639064	1633.89536	-0.82039	-0.00044764	1.8967	0.0010349	1.0764	0.0005873	545.6400158726336	135.01	0.56082	135.01	134.67	135.23	0	-0.0081328	-7.3825E-05	NaN	0.08335	16	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2866900	+		62450	21340	45595	45950							0.10377090822339596
WYQHRQKKLRR	11	Unmodified	_WYQHRQKKLRR_					0	0	0		HEPH|p.R1137K|1|0.21|ENSG00000089472|chrX:66266605-66266605|G/A|missense_variant	HEPH|p.R1137K|1|0.21|ENSG00000089472|chrX:66266605-66266605|G/A|missense_variant	HEPH|p.R1137K|1|0.21|ENSG00000089472|chrX:66266605-66266605|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	799.9640502929688	2	799.960575	1597.9066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.64	1	138.72	138.22	139.22	0.083969								0	0	0	0.16358	1	54355	54355		0.30703	0.30703	1				62451	14107	45596	45951	60806	60806					0.13155912916477064
WYRKYKDRTNI	11	Unmodified	_WYRKYKDRTNI_					0	0	0		ENST00000443026.6_1_7:20699166-20699316:+|nuORF	ENST00000443026.6_1_7:20699166-20699316:+|nuORF	ENST00000443026.6_1_7:20699166-20699316:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	771.7625122070312	2	771.912424	1541.8103	-0.57285	-0.00044219	-1.0718	-0.00082732	-1.6446	-0.0012695	771.9119661039849	65.16	0.71297	65.16	64.903	65.616	0					18	13	2	0	0	0	0.73822	1	23630	23630		1.0715	0.10919	1	1584000			62452	12003	45597	45952	60807	60807					0.061063005658752445
WYRKYKDRTNI	11	Unmodified	_WYRKYKDRTNI_					0	0	0		ENST00000443026.6_1_7:20699166-20699316:+|nuORF	ENST00000443026.6_1_7:20699166-20699316:+|nuORF	ENST00000443026.6_1_7:20699166-20699316:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	772.8117065429688	2	771.912424	1541.8103	-0.92009	-0.00071023	-0.63457	-0.00048983	-1.5547	-0.0012001	772.4133314024004	64.723	0.61169	65.463	65.105	65.716	0.73915					17	11	2	0	0	0	0.73809	1	24585	24585		1.1933	0.12188	1	1802000			62453	12003	45597	45952	60808	60808					0.061063005658752445
WYRKYKDRTNI	11	Unmodified	_WYRKYKDRTNI_					0	0	0		ENST00000443026.6_1_7:20699166-20699316:+|nuORF	ENST00000443026.6_1_7:20699166-20699316:+|nuORF	ENST00000443026.6_1_7:20699166-20699316:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	771.912424	1541.8103	-0.57285	-0.00044219	-1.0718	-0.00082732	-1.6446	-0.0012695	771.9119661039849	65.16	0.71297	65.16	64.903	65.616	0	-0.1513	-0.00035919	NaN	1.1933	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1584000			62454	12003	45597	45952							0.061063005658752445
WYRWRWPQSWR	11	Unmodified	_WYRWRWPQSWR_					0	0	0			REV__ENST00000380009.8_1_5:94890875-94891094:+|nuORF	REV__ENST00000380009.8_1_5:94890875-94891094:+|nuORF	MSMS	A375_MHC_IP_R2	2	569.6770629882812	3	569.619892	1705.83785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.22	1	112.94	112.44	113.44	0.72458								0	0	0	0.1636	1	42308	42308		0	0	1		+		62455	24207	45598	45953	60809	60809					0.01316248616763005
WYTSESLTLSL	11	Unmodified	_WYTSESLTLSL_					0	0	0			REV__ENST00000545764.1_1_6:160208906-160209185:-|nuORF	REV__ENST00000545764.1_1_6:160208906-160209185:-|nuORF	MSMS	A375_MHC_IP_R1	1	433.619384765625	3	433.887088	1298.63943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.26	1	138.26	137.76	138.76	0								0	0	0	0.16258	1	53188	53188		2.4348	0.18206	1		+		62456	25914	45599	45954	60810	60810					0.0020592540392954106
WYYNKQNQRRW	11	Unmodified	_WYYNKQNQRRW_					0	0	0		ENST00000554270.5_1_14:88936247-89016761:-|nuORF;ENSG00000070778|ENST00000556564|PTPN21;ENST00000554178.1_1_14:88978906-89016761:-|nuORF;ENST00000554628.5_1_14:88959357-89016761:-|nuORF	ENST00000554270.5_1_14:88936247-89016761:-|nuORF	ENST00000554270.5_1_14:88936247-89016761:-|nuORF	MSMS	A375_MHC_IP_R1	1	821.0985107421875	2	821.405298	1640.79604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.973	1	85.973	85.473	86.473	0								0	0	0	0.1636	1	31516	31516		0	0	1				62457	1501	45600	45955	60811	60811					0.0012764813757257798
WYYPQIMQYVP	11	Unmodified	_WYYPQIMQYVP_					0	0	0		nc|ENSG00000126545|P47710-4|CSN1S1;nc|ENSG00000126545|P47710-3|CSN1S1;nc|ENSG00000126545|P47710-2|CSN1S1;ENSG00000126545|ENST00000246891|CSN1S1	nc|ENSG00000126545|P47710-4|CSN1S1	nc|ENSG00000126545|P47710-4|CSN1S1	MULTI-SECPEP	A375_MHC_IP_R1	1	372.60888671875	4	372.681154	1486.69551	0.38126	0.00014209	-0.89339	-0.00033295	-0.51213	-0.00019086	372.6807189995605	20.155	0.25453	20.155	20.079	20.334	0					6	4	2	0	0	0	1.0011	1	5183	5183		0.45452	0.35968	1	555540			62458	4047	45601	45956	60812	60812					-0.028371449602673238
WYYWWLRRPSY	11	Unmodified	_WYYWWLRRPSY_					0	0	0			REV__SGMS1|p.H308Y|1|0.16|ENSG00000198964|chr10:50308122-50308122|G/A|missense_variant	REV__SGMS1|p.H308Y|1|0.16|ENSG00000198964|chr10:50308122-50308122|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	838.411865234375	2	838.41206	1674.80957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.37	1	143.39	142.89	143.89	0.024414								0	0	0	0.1636	1	56031	56031		0	0	1		+		62459	27954	45602	45957	60813	60813					-0.0008449408317119378
YAAAGEESSL	10	Unmodified	_YAAAGEESSL_					0	0	0			REV__nc|ENSG00000172164|Q13884-2|SNTB1	REV__nc|ENSG00000172164|Q13884-2|SNTB1	MULTI-SECPEP	A375_MHC_IP_R2	2	498.6687316894531	2	499.227279	996.440005	-0.71234	-0.00035562	-0.12887	-6.4333E-05	-0.84121	-0.00041995	499.2272409134385	65.634	0.61035	66.372	66.018	66.629	0.73811					25	11	3	0	0	0	0.80715	1	24794	24794		16.942	6.1184	1	2514400	+		62460	21126	45603	45958	60814	60814					-0.05835709823998059
YAAAQLRQY	9	Unmodified	_YAAAQLRQY_					0	0	0		nc|ENSG00000117614|O95926-2|SYF2;ENSG00000117614|ENST00000236273|SYF2	nc|ENSG00000117614|O95926-2|SYF2	nc|ENSG00000117614|O95926-2|SYF2	MULTI-MSMS	A375_MHC_IP_R1	1	542.6826171875	2	542.282723	1082.55089	-0.72217	-0.00039162	-0.80286	-0.00043538	-1.525	-0.000827	542.282460525517	36.299	0.61053	36.299	36.033	36.644	0					27	11	4	0	0	0	0.0022313	2	12142	12142;12244		141.83	90.972	1	5217300			62461	3500	45604	45959	60815;60816	60815					0.012919746747684258
YAAAQLRQY	9	Unmodified	_YAAAQLRQY_					0	0	0		nc|ENSG00000117614|O95926-2|SYF2;ENSG00000117614|ENST00000236273|SYF2	nc|ENSG00000117614|O95926-2|SYF2	nc|ENSG00000117614|O95926-2|SYF2	MULTI-MSMS	A375_MHC_IP_R2	2	542.6821899414062	2	542.282723	1082.55089	-1.0447	-0.00056653	0.27346	0.00014829	-0.77126	-0.00041824	542.2829049036808	35.576	0.40496	36.339	36.132	36.537	0.76338					18	7	3	0	0	0	0.010057	1	12921	12921		125.62	77.279	1	4727800			62462	3500	45604	45959	60817	60817					0.012919746747684258
YAAELIERV	9	Unmodified	_YAAELIERV_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-MSMS	A375_MHC_IP_R1	1	532.6926879882812	2	532.292756	1062.57096	-0.78818	-0.00041954	-2.4047	-0.00128	-3.1929	-0.0016995	532.2933875580517	66.032	0.50661	66.032	65.768	66.275	0					21	9	3	0	0	0	0.4875	1	23930	23930		20.415	3.3016	1	1508100			62463	5536	45605	45960	60818	60818					0.04217725614716983
YAAELIERV	9	Unmodified	_YAAELIERV_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-MATCH	A375_MHC_IP_R2	2		2	532.292756	1062.57096	-0.77358	-0.00041177	-4.0784	-0.0021709	-4.852	-0.0025827	532.7910257528599	65.126	0.40547	65.864	65.613	66.018	0.73811	-0.083814	-0.00078079	NaN	20.415	20	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1989400			62464	5536	45605	45960							0.04217725614716983
YAAIPREM	8	Oxidation (M)	_YAAIPREM(Oxidation (M))_		YAAIPREM(1)		YAAIPREM(48)	0	0	1		ENSG00000176903|ENST00000316836|PNMA1	ENSG00000176903|ENST00000316836|PNMA1	ENSG00000176903|ENST00000316836|PNMA1	MULTI-MSMS	A375_MHC_IP_R1	1	484.13916015625	2	483.739302	965.464052	-0.53975	-0.0002611	1.2019	0.0005814	0.66214	0.0003203	483.73952990698797	29.043	0.91226	29.043	28.491	29.403	0					30	17	2	0	0	0	0.51581	1	8977	8977		48.346	16.04	1	3069300			62465	8042	45606	45961	60819	60819		394			-0.020061478713159886
YAAIPREM	8	Unmodified	_YAAIPREM_					0	0	0		ENSG00000176903|ENST00000316836|PNMA1	ENSG00000176903|ENST00000316836|PNMA1	ENSG00000176903|ENST00000316836|PNMA1	MULTI-MSMS	A375_MHC_IP_R1	1	475.6601867675781	2	475.741845	949.469137	-0.49308	-0.00023458	-0.082343	-3.9174E-05	-0.57542	-0.00027375	475.74178279725146	44.035	0.40809	44.035	43.859	44.267	0					12	7	2	0	0	0	0.71318	2	15331	15278;15331		30.637	11.198	1	2956700			62466	8042	45606	45962	60820;60821	60821					-0.0076184400869578894
YAAIPREM	8	Unmodified	_YAAIPREM_					0	0	0		ENSG00000176903|ENST00000316836|PNMA1	ENSG00000176903|ENST00000316836|PNMA1	ENSG00000176903|ENST00000316836|PNMA1	MULTI-SECPEP	A375_MHC_IP_R2	2	475.6601867675781	2	475.741845	949.469137	-0.40216	-0.00019133	-0.47175	-0.00022443	-0.87391	-0.00041575	475.7416864308129	43.274	0.45596	44.046	43.826	44.282	0.7724					19	8	3	0	0	0	0.92867	1	16063	16063		24.021	4.5816	1	3263500			62467	8042	45606	45962	60822	60822					-0.0076184400869578894
YAAIRDNY	8	Unmodified	_YAAIRDNY_					0	0	0		ENSG00000144118|ENST00000272519|RALB;ENSG00000006451|ENST00000005257|RALA;nc|ENSG00000144118|P11234-3|RALB;nc|ENSG00000144118|P11234-2|RALB	ENSG00000144118|ENST00000272519|RALB	ENSG00000144118|ENST00000272519|RALB	MULTI-MSMS	A375_MHC_IP_R2	2	493.64019775390625	2	493.240524	984.466495	-0.53539	-0.00026408	0.22451	0.00011074	-0.31087	-0.00015334	493.24057106608274	31.281	0.41028	32	31.821	32.231	0.71857					14	7	2	0	0	0	0.70629	1	11061	11061		32.786	2.5609	1	4099700			62468	913	45607	45963	60823	60823					-0.02635976142016716
YAAIRDNYF	9	Unmodified	_YAAIRDNYF_					0	0	0		ENSG00000144118|ENST00000272519|RALB;ENSG00000006451|ENST00000005257|RALA;nc|ENSG00000144118|P11234-3|RALB;nc|ENSG00000144118|P11234-2|RALB	ENSG00000144118|ENST00000272519|RALB	ENSG00000144118|ENST00000272519|RALB	MULTI-MSMS	A375_MHC_IP_R1	1	567.1746826171875	2	566.774731	1131.53491	-0.25733	-0.00014585	0.1172	6.6425E-05	-0.14013	-7.9423E-05	566.7747639993175	62.48	1.4838	62.48	62.097	63.58	0					89	28	5	0	0	0	0.0090873	4	22510	22471;22498;22510;22768		110.67	110.67	1	106790000			62469	913	45608	45964	60824;60825;60826;60827	60826					-0.025597315621553207
YAAIRDNYF	9	Unmodified	_YAAIRDNYF_					0	0	0		ENSG00000144118|ENST00000272519|RALB;ENSG00000006451|ENST00000005257|RALA;nc|ENSG00000144118|P11234-3|RALB;nc|ENSG00000144118|P11234-2|RALB	ENSG00000144118|ENST00000272519|RALB	ENSG00000144118|ENST00000272519|RALB	MULTI-MSMS	A375_MHC_IP_R2	2	567.173828125	2	566.774731	1131.53491	-0.67933	-0.00038502	0.009044	5.1259E-06	-0.67028	-0.0003799	566.7746981287893	61.802	1.3656	62.545	62.118	63.484	0.74263					91	26	6	0	0	0	0.0099638	5	23356	23352;23356;23484;23585;23605		134.3	98.169	1	124500000			62470	913	45608	45964	60828;60829;60830;60831;60832	60829					-0.025597315621553207
YAAIRNILYKK	11	Unmodified	_YAAIRNILYKK_					0	0	0		tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1	tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1	tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1	MSMS	A375_MHC_IP_R1	1	676.9049682617188	2	676.906079	1351.79761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.607	1	97.607	97.107	98.107	0								0	0	0	0.1629	1	35860	35860		3.5965	0.31518	1				62471	29882	45609	45965	60833	60833					0.13577889173643598
YAALHHRIL	9	Unmodified	_YAALHHRIL_					0	0	0		nc|ENSG00000031823|Q9H6Z4-2|RANBP3;ENSG00000031823|ENST00000340578|RANBP3;ENST00000586344.5_1_19:5917623-5933521:-|nuORF;nc|ENSG00000031823|Q9H6Z4-3|RANBP3;ENST00000592771.5_1_19:5917623-5941693:-|nuORF	nc|ENSG00000031823|Q9H6Z4-2|RANBP3	nc|ENSG00000031823|Q9H6Z4-2|RANBP3	MULTI-SECPEP	A375_MHC_IP_R2	2	364.93304443359375	3	365.213692	1092.61925	0.018464	6.7434E-06	-0.15732	-5.7454E-05	-0.13885	-5.0711E-05	365.21345929657775	30.472	0.30343	31.191	31.064	31.367	0.71857					7	5	2	0	0	0	0.73363	1	10671	10671		7.1017	6.4749	1	953850			62472	1115	45610	45966	60834	60834					0.07664264045274649
YAALHHRIL	9	Unmodified	_YAALHHRIL_					0	0	0		nc|ENSG00000031823|Q9H6Z4-2|RANBP3;ENSG00000031823|ENST00000340578|RANBP3;ENST00000586344.5_1_19:5917623-5933521:-|nuORF;nc|ENSG00000031823|Q9H6Z4-3|RANBP3;ENST00000592771.5_1_19:5917623-5941693:-|nuORF	nc|ENSG00000031823|Q9H6Z4-2|RANBP3	nc|ENSG00000031823|Q9H6Z4-2|RANBP3	MULTI-MATCH	A375_MHC_IP_R1	1		3	365.213692	1092.61925	0.2531	9.2437E-05	0.83585	0.00030526	1.089	0.0003977	365.2139846472976	31.519	0.35463	31.519	31.312	31.667	0	0.16406	8.2042E-05	NaN	10.8	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1349700			62473	1115	45610	45966							0.07664264045274649
YAALRLTT	8	Unmodified	_YAALRLTT_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-SECPEP	A375_MHC_IP_R1	1	908.9198608398438	1	908.519993	907.512717	-0.49385	-0.00044867	-0.12088	-0.00010982	-0.61472	-0.00055849	908.5203259160223	145.37	0.084229	145.37	145.34	145.42	0					11	9	2	0	0	0	0.972	1	55735	55735		0	0	1	108650	+		62474	27230	45611	45967	60835	60835					0.05526088760063885
YAAMILEFPY	10	Unmodified	_YAAMILEFPY_					0	0	0			REV__ENSG00000129657|ENST00000436233|SEC14L1	REV__ENSG00000129657|ENST00000436233|SEC14L1	MULTI-SECPEP	A375_MHC_IP_R2	2	609.1993408203125	2	609.299193	1216.58383	-0.38275	-0.00023321	2.0805	0.0012677	1.6978	0.0010345	609.3010394047644	84.02	0.46318	84.76	84.508	84.971	0.73962					11	8	2	0	0	0	0.85226	1	31908	31908		3.2813	1.6287	1	1185500	+		62475	18503	45612	45968	60836	60836					-0.015795793173992934
YAANLKNV	8	Unmodified	_YAANLKNV_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	A375_MHC_IP_R2	2	447.29730224609375	2	446.747985	891.481417	-0.33558	-0.00014992	-0.27053	-0.00012086	-0.60611	-0.00027078	446.74789843111745	41.87	0.4097	42.644	42.401	42.811	0.77451					12	7	2	0	0	0	0.77123	1	15601	15601		14.582	5.2343	1	1099200			62476	2516	45613	45969	60837	60837					0.03133515726005953
YAAQENLEY	9	Unmodified	_YAAQENLEY_					0	0	0		ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	MULTI-SECPEP	A375_MHC_IP_R1	1	551.14794921875	2	550.748379	1099.4822	-0.569	-0.00031338	0.1609	8.8616E-05	-0.4081	-0.00022476	550.7484300617632	53.417	0.50774	53.417	53.148	53.656	0					19	9	3	0	0	0	0.053904	1	19052	19052		65.235	18.314	1	3642700			62477	4646	45614	45970	60838	60838					-0.06355734415615188
YAAQRISF	8	Unmodified	_YAAQRISF_					0	0	0			REV__ENSG00000154143|ENST00000284288|PANX3	REV__ENSG00000154143|ENST00000284288|PANX3	MULTI-SECPEP	A375_MHC_IP_R2	2	477.5986022949219	2	478.253434	954.492316	-0.46789	-0.00022377	0.11439	5.4706E-05	-0.3535	-0.00016906	478.2534792943552	69.78	0.45887	70.514	70.284	70.743	0.73421					13	8	2	0	0	0	0.93416	1	26440	26440		14.582	0	1	1558300	+		62478	19866	45615	45971	60839	60839					0.013249181002947807
YAARARLL	8	Unmodified	_YAARARLL_					0	0	0		ENSG00000108106|ENST00000264552|UBE2S	ENSG00000108106|ENST00000264552|UBE2S	ENSG00000108106|ENST00000264552|UBE2S	MULTI-SECPEP	A375_MHC_IP_R1	1	467.6847839355469	2	467.285069	932.555585	-0.46909	-0.0002192	0.0073628	3.4405E-06	-0.46172	-0.00021576	467.2849622929864	30.844	0.71117	30.844	30.703	31.414	0					28	13	3	0	0	0	0.88799	1	9847	9847		20.871	8.3397	1	4391000			62479	2785	45616	45972	60840	60840					0.08660903608188164
YAASPRIF	8	Unmodified	_YAASPRIF_					0	0	0		nc|ENSG00000075292|Q14966-2|ZNF638;nc|ENSG00000075292|Q14966-6|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638	nc|ENSG00000075292|Q14966-2|ZNF638	nc|ENSG00000075292|Q14966-2|ZNF638	MULTI-SECPEP	A375_MHC_IP_R1	1	463.1506652832031	2	462.750527	923.486502	-0.144	-6.6636E-05	0.5218	0.00024146	0.3778	0.00017483	462.75071354441735	56.774	0.45927	56.774	56.548	57.007	0					17	8	3	0	0	0	0.73563	1	20374	20374		44.407	12.29	1	2051500			62480	1606	45617	45973	60841	60841					0.021698195886187932
YAASPRIF	8	Unmodified	_YAASPRIF_					0	0	0		nc|ENSG00000075292|Q14966-2|ZNF638;nc|ENSG00000075292|Q14966-6|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638	nc|ENSG00000075292|Q14966-2|ZNF638	nc|ENSG00000075292|Q14966-2|ZNF638	MULTI-SECPEP	A375_MHC_IP_R2	2	463.15032958984375	2	462.750527	923.486502	-0.69446	-0.00032136	0.35573	0.00016461	-0.33873	-0.00015675	462.7507213087314	55.882	0.51	56.632	56.388	56.898	0.75014					14	9	2	0	0	0	0.64636	1	21140	21140		42.095	15.211	1	1721600			62481	1606	45617	45973	60842	60842					0.021698195886187932
YAATRATL	8	Unmodified	_YAATRATL_					0	0	0		nc|ENSG00000151239|Q12792-3|TWF1;nc|ENSG00000151239|Q12792-4|TWF1;ENSG00000151239|ENST00000395510|TWF1	nc|ENSG00000151239|Q12792-3|TWF1	nc|ENSG00000151239|Q12792-3|TWF1	MULTI-SECPEP	A375_MHC_IP_R1	1	434.1399841308594	2	433.74016	865.465767	-0.37899	-0.00016438	0.192	8.328E-05	-0.18698	-8.1102E-05	433.74021489724487	27.917	0.55412	27.917	27.684	28.238	0					26	10	4	0	0	0	0.84748	1	8537	8537		36.044	12.024	1	14145000			62482	14677	45618	45974	60843	60843					0.027652292089555885
YACFFLFNL	9	Unmodified	_YACFFLFNL_					0	0	0			REV__nc|ENSG00000170456|Q6ZUT9-3|DENND5B	REV__nc|ENSG00000170456|Q6ZUT9-3|DENND5B	MULTI-SECPEP	A375_MHC_IP_R2	2	569.2088623046875	2	569.275521	1136.53649	-0.23788	-0.00013542	-0.84962	-0.00048367	-1.0875	-0.00061909	569.2754458550739	109.37	0.76096	110.12	109.67	110.43	0.74684					28	14	3	0	0	0	0.60012	1	41185	41185		18.135	0	1	1866800	+		62483	27351	45619	45975	60844	60844					-0.026318137977341394
YACMHPLS	8	Unmodified	_YACMHPLS_					0	0	0			REV__nc|ENSG00000185973|Q9NVH6-3|TMLHE	REV__nc|ENSG00000185973|Q9NVH6-3|TMLHE	MULTI-SECPEP	A375_MHC_IP_R2	2	460.701904296875	2	461.201499	920.388444	-0.87145	-0.00040191	-0.087973	-4.0573E-05	-0.95942	-0.00044249	461.2014840689994	59.313	0.60732	60.06	59.742	60.349	0.74714					24	11	3	0	0	0	0.972	1	22424	22424		2.5775	0	1	3940600	+		62484	27417	45620	45976	60845	60845					-0.07493448323236862
YACPLPREA	9	Unmodified	_YACPLPREA_					0	0	0		ENSG00000109674|ENST00000264596|NEIL3	ENSG00000109674|ENST00000264596|NEIL3	ENSG00000109674|ENST00000264596|NEIL3	MULTI-SECPEP	A375_MHC_IP_R1	1	510.451171875	2	510.252577	1018.4906	0.036486	1.8617E-05	-0.32153	-0.00016406	-0.28505	-0.00014545	510.2524856030397	48.875	0.45534	48.875	48.629	49.084	0					13	8	2	0	0	0	0.69381	1	17208	17208		20.415	20.415	1	1187200			62485	2883	45621	45977	60846	60846					-0.017904589799968562
YADEDEEML	9	Unmodified	_YADEDEEML_					0	0	0			REV__ENSG00000122406|ENST00000370321|RPL5	REV__ENSG00000122406|ENST00000370321|RPL5	MSMS	A375_MHC_IP_R1	1	557.6640014648438	2	557.715887	1113.41722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.624	1	52.624	52.124	53.124	0								0	0	0	0.15486	1	18725	18725		12.532	0	1		+		62486	18203	45622	45978	60847	60847					-0.13495097003760748
YADEIQRY	8	Unmodified	_YADEIQRY_					0	0	0		tr|U7STW8|U7STW8_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01218PE=4SV=1	tr|U7STW8|U7STW8_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01218PE=4SV=1	tr|U7STW8|U7STW8_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01218PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	528.7135620117188	2	529.251089	1056.48762	-0.54183	-0.00028676	-1.6246	-0.00085983	-2.1664	-0.0011466	529.7520809866594	67.552	0.40839	68.288	68.052	68.461	0.73631					12	7	2	0	0	0	0.972	1	25580	25580		1.8442	0	1	711700			62487	29720	45623	45979	60848	60848					-0.03836010833151704
YADFKQRYKVL	11	Unmodified	_YADFKQRYKVL_					0	0	0		ENSG00000125414|ENST00000245503|MYH2;ENSG00000264424|ENST00000255381|MYH4;ENSG00000109061|ENST00000226207|MYH1	ENSG00000125414|ENST00000245503|MYH2;ENSG00000264424|ENST00000255381|MYH4	ENSG00000125414|ENST00000245503|MYH2	MSMS	A375_MHC_IP_R1	1	715.9824829101562	2	715.893169	1429.77178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.091	1	87.091	86.591	87.591	0								0	0	0	0.16191	1	31950	31950		8.7454	3.0136	1				62488	3959;9953	45624	45980	60849	60849					0.07408994931347479
YADFVWFLI	9	Unmodified	_YADFVWFLI_					0	0	0		ENSG00000073711|ENST00000264977|PPP2R3A;nc|ENSG00000073711|Q06190-3|PPP2R3A;nc|ENSG00000073711|Q06190-2|PPP2R3A;ENST00000477110.6_1_X:299337-302121:-|nuORF;ENST00000468169.6_1_X:299440-306311:-|nuORF;ENSG00000167393|ENST00000390665|PPP2R3B	ENSG00000073711|ENST00000264977|PPP2R3A;ENST00000468169.6_1_X:299440-306311:-|nuORF	ENSG00000073711|ENST00000264977|PPP2R3A	MULTI-SECPEP	A375_MHC_IP_R1	1	587.7022705078125	2	587.302593	1172.59063	-0.25415	-0.00014927	-0.26606	-0.00015626	-0.52021	-0.00030552	587.3024124418013	25.161	0.40554	25.161	25.002	25.408	0					13	7	2	0	0	0	0.75466	1	7345	7345		12.532	12.532	1	5286900			62489	1567;7181	45625	45981	60850	60850					0.01124101625464391
YADGESFLGY	10	Unmodified	_YADGESFLGY_					0	0	0		ENSG00000159377|ENST00000290541|PSMB4;ENST00000474100.1_1_1:151372658-151373852:+|nuORF	ENSG00000159377|ENST00000290541|PSMB4	ENSG00000159377|ENST00000290541|PSMB4	MULTI-MSMS	A375_MHC_IP_R1	1	561.1461791992188	2	561.242929	1120.47131	-0.38313	-0.00021503	0.10865	6.0981E-05	-0.27447	-0.00015405	561.2430009172964	97.393	1.5215	97.393	96.985	98.507	0					76	29	5	0	0	0	0.015131	1	35728	35728		88.904	52.777	1	14359000			62490	6369	45626	45982	60851	60851					-0.08411136789891316
YADGESFLGY	10	Unmodified	_YADGESFLGY_					0	0	0		ENSG00000159377|ENST00000290541|PSMB4;ENST00000474100.1_1_1:151372658-151373852:+|nuORF	ENSG00000159377|ENST00000290541|PSMB4	ENSG00000159377|ENST00000290541|PSMB4	MULTI-MSMS	A375_MHC_IP_R1	1	1121.8778076171875	1	1121.47858	1120.47131	0.14426	0.00016178	0.095284	0.00010686	0.23954	0.00026864	1121.4785859097967	97.431	2.334	97.431	96.985	99.319	0					128	45	5	0	0	0	0.079406	1	36306	36306		68.081	42.681	1	145440000			62491	6369	45626	45982	60852	60852					-0.08411136789891316
YADGESFLGY	10	Unmodified	_YADGESFLGY_					0	0	0		ENSG00000159377|ENST00000290541|PSMB4;ENST00000474100.1_1_1:151372658-151373852:+|nuORF	ENSG00000159377|ENST00000290541|PSMB4	ENSG00000159377|ENST00000290541|PSMB4	MULTI-MSMS	A375_MHC_IP_R2	2	561.715576171875	2	561.242929	1120.47131	-0.74265	-0.00041681	-0.07453	-4.183E-05	-0.81718	-0.00045864	561.2429082608494	96.813	1.4696	97.569	96.911	98.381	0.75586					82	28	5	0	0	0	0.0042327	3	36759	36741;36759;36897		100.37	45.598	1	18706000			62492	6369	45626	45982	60853;60854;60855	60854					-0.08411136789891316
YADGESFLGY	10	Unmodified	_YADGESFLGY_					0	0	0		ENSG00000159377|ENST00000290541|PSMB4;ENST00000474100.1_1_1:151372658-151373852:+|nuORF	ENSG00000159377|ENST00000290541|PSMB4	ENSG00000159377|ENST00000290541|PSMB4	MULTI-MSMS	A375_MHC_IP_R2	2	1121.879150390625	1	1121.47858	1120.47131	-0.028772	-3.2268E-05	-0.17703	-0.00019853	-0.2058	-0.0002308	1121.4782847566198	96.839	2.1327	97.595	97.115	99.248	0.75586					120	41	5	0	0	0	0.02032	1	37255	37255		85.272	59.873	1	185870000			62493	6369	45626	45982	60856	60856					-0.08411136789891316
YADGNYKNTF	10	Unmodified	_YADGNYKNTF_					0	0	0		ENST00000501011.6_1_11:82784563-82784683:+|nuORF	ENST00000501011.6_1_11:82784563-82784683:+|nuORF	ENST00000501011.6_1_11:82784563-82784683:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	597.1669921875	2	596.767103	1191.51965	-0.05843	-3.4869E-05	0.12868	7.6793E-05	0.070252	4.1924E-05	596.7670292695761	38.849	0.40533	38.849	38.628	39.033	0					14	7	3	0	0	0	0.53946	1	13230	13230		25.399	6.1423	1	7101600			62494	12780	45627	45983	60857	60857					-0.06844643149997864
YADLSLKY	8	Unmodified	_YADLSLKY_					0	0	0		ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF	ENSG00000213593|ENST00000278422|TMX2	ENSG00000213593|ENST00000278422|TMX2	MULTI-MSMS	A375_MHC_IP_R1	1	487.189697265625	2	486.755475	971.496398	-0.13591	-6.6153E-05	0.33819	0.00016461	0.20228	9.8462E-05	486.7555693581518	62.471	0.46187	62.471	62.249	62.711	0					11	8	2	0	0	0	0.73111	1	22538	22538		25.399	0.72543	1	1010800			62495	9573	45628	45984	60858	60858					0.009509628033242734
YADLSLKY	8	Unmodified	_YADLSLKY_					0	0	0		ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF	ENSG00000213593|ENST00000278422|TMX2	ENSG00000213593|ENST00000278422|TMX2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	486.755475	971.496398	-0.89436	-0.00043534	0.50542	0.00024602	-0.38894	-0.00018932	486.7554488405458	61.791	0.40428	62.534	62.319	62.724	0.74263	0.031507	0.00010304	NaN	25.399	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1161600			62496	9573	45628	45984							0.009509628033242734
YADNQVMHFY	10	Unmodified	_YADNQVMHFY_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-SECPEP	A375_MHC_IP_R1	1	644.6767578125	2	644.27678	1286.53901	-0.17926	-0.0001155	-0.59676	-0.00038448	-0.77602	-0.00049997	644.2765434812835	70.084	0.61015	70.084	69.832	70.442	0					22	11	3	0	0	0	0.077317	1	25422	25422		89.401	73.252	1	2846700			62497	8061	45629	45985	60859	60859					-0.09280010130737537
YADNQVMHFY	10	Unmodified	_YADNQVMHFY_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-SECPEP	A375_MHC_IP_R2	2	644.996337890625	2	644.27678	1286.53901	-0.60691	-0.00039102	-0.32739	-0.00021093	-0.9343	-0.00060195	644.2761948784755	69.446	0.50703	70.18	69.981	70.488	0.73421					18	9	3	0	0	0	0.22459	1	26280	26280		66.457	63.461	1	2788100			62498	8061	45629	45985	60860	60860					-0.09280010130737537
YADPVNAHY	9	Unmodified	_YADPVNAHY_					0	0	0		nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3	nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000119314|O95758-7|PTBP3	MULTI-MSMS	A375_MHC_IP_R1	1	525.6378784179688	2	525.237981	1048.46141	-0.70863	-0.0003722	0.44057	0.0002314	-0.26807	-0.0001408	525.2380277090464	37.967	0.5584	37.967	37.71	38.268	0					32	10	5	0	0	0	0.024574	1	12812	12812		79.596	35.189	1	32398000			62499	3580	45630	45986	60861	60861					-0.060882800046329066
YADPVNAHY	9	Unmodified	_YADPVNAHY_					0	0	0		nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3	nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000119314|O95758-7|PTBP3	MULTI-MSMS	A375_MHC_IP_R2	2	525.6375122070312	2	525.237981	1048.46141	-0.95921	-0.00050381	0.29756	0.00015629	-0.66164	-0.00034752	525.237936148581	37.32	0.81387	38.091	37.665	38.479	0.7709					40	15	5	0	0	0	0.024574	1	13612	13612		79.596	35.189	1	36548000			62500	3580	45630	45986	60862	60862					-0.060882800046329066
YADREFDYFHH	11	Unmodified	_YADREFDYFHH_					0	0	0			REV__ENSG00000115904|ENST00000402219|SOS1	REV__ENSG00000115904|ENST00000402219|SOS1	MSMS	A375_MHC_IP_R1	1	500.6249084472656	3	500.549469	1498.62658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.468	1	58.468	57.968	58.968	0								0	0	0	0.16305	1	21003	21003		2.8433	0.21205	1		+		62501	17922	45631	45987	60863	60863					-0.102790929356388
YADVEPHPV	9	Unmodified	_YADVEPHPV_					0	0	0			REV__ENSG00000081148|ENST00000193391|IMPG2	REV__ENSG00000081148|ENST00000193391|IMPG2	MULTI-SECPEP	A375_MHC_IP_R2	2	514.1475830078125	2	513.748182	1025.48181	-0.69786	-0.00035853	-1.1822	-0.00060734	-1.88	-0.00096587	513.7473246860005	42.318	0.5616	43.09	42.707	43.268	0.7724					14	10	2	0	0	0	0.52144	1	15779	15779		23.148	11.508	1	1725500	+		62502	16769	45632	45988	60864	60864					-0.02991109344816323
YADVEPHPV	9	Unmodified	_YADVEPHPV_					0	0	0			REV__ENSG00000081148|ENST00000193391|IMPG2	REV__ENSG00000081148|ENST00000193391|IMPG2	MULTI-MATCH	A375_MHC_IP_R1	1		2	513.748182	1025.48181	-0.27067	-0.00013905	-0.22197	-0.00011404	-0.49264	-0.00025309	513.7481859059571	43.087	0.40778	43.087	42.841	43.249	0	-0.0015852	0.00022063	NaN	23.148	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1314700	+		62503	16769	45632	45988							-0.02991109344816323
YADYRENSY	9	Unmodified	_YADYRENSY_					0	0	0		ENST00000301781.10_1_11:62457841-62462085:-|nuORF;nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2	ENST00000301781.10_1_11:62457841-62462085:-|nuORF	ENST00000301781.10_1_11:62457841-62462085:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	590.703857421875	2	590.74891	1179.48327	-0.54104	-0.00031962	0.20137	0.00011896	-0.33967	-0.00020066	590.7489578971355	27.962	0.40343	27.962	27.735	28.138	0					12	7	2	0	0	0	0.0098926	1	8553	8553		118.07	85.283	1	4530500			62504	7250	45633	45989	60865	60865					-0.09929520046694051
YADYRENSY	9	Unmodified	_YADYRENSY_					0	0	0		ENST00000301781.10_1_11:62457841-62462085:-|nuORF;nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2	ENST00000301781.10_1_11:62457841-62462085:-|nuORF	ENST00000301781.10_1_11:62457841-62462085:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	591.1482543945312	2	590.74891	1179.48327	-0.49159	-0.00029041	-0.068649	-4.0554E-05	-0.56024	-0.00033096	590.7486603011032	27.374	0.40657	28.053	27.895	28.301	0.67857					13	7	2	0	0	0	0.027818	1	9369	9369		76.825	59.712	1	4983500			62505	7250	45633	45989	60866	60866					-0.09929520046694051
YADYSGQQSTY	11	Unmodified	_YADYSGQQSTY_					0	0	0		ENSG00000152795|ENST00000295470|HNRNPDL;nc|ENSG00000152795|O14979-2|HNRNPDL	ENSG00000152795|ENST00000295470|HNRNPDL	ENSG00000152795|ENST00000295470|HNRNPDL	MULTI-MSMS	A375_MHC_IP_R1	1	642.6659545898438	2	641.764757	1281.51496	-0.19452	-0.00012484	-0.26295	-0.00016875	-0.45747	-0.00029359	641.7645779903532	39.006	0.66104	39.006	38.679	39.34	0					37	12	4	0	0	0	0.00028838	1	13244	13244		125.04	98.77	1	21594000			62506	5985	45634	45990	60867	60867					-0.11453572083405561
YADYSGQQSTY	11	Unmodified	_YADYSGQQSTY_					0	0	0		ENSG00000152795|ENST00000295470|HNRNPDL;nc|ENSG00000152795|O14979-2|HNRNPDL	ENSG00000152795|ENST00000295470|HNRNPDL	ENSG00000152795|ENST00000295470|HNRNPDL	MULTI-MSMS	A375_MHC_IP_R2	2	642.1646118164062	2	641.764757	1281.51496	-1.0998	-0.00070581	0.12408	7.9628E-05	-0.97571	-0.00062618	641.7648437594177	38.456	0.76299	39.231	38.895	39.658	0.77451					43	14	4	0	0	0	0.00023355	1	14091	14091		128.57	82.833	1	18785000			62507	5985	45634	45990	60868	60868					-0.11453572083405561
YAEFRFCGAY	10	Unmodified	_YAEFRFCGAY_					0	0	0			REV__ABCB1|p.G960E|1|0.22|ENSG00000085563|chr7:87519374-87519374|C/T|missense_variant	REV__ABCB1|p.G960E|1|0.22|ENSG00000085563|chr7:87519374-87519374|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	613.2003784179688	2	613.768591	1225.52263	0.040689	2.4973E-05	1.3157	0.00080755	1.3564	0.00083252	614.2706304332933	38.835	0.30378	38.835	38.679	38.983	0					8	5	2	0	0	0	0.91909	1	13236	13236		9.3831	0	1	2111100	+		62508	15283	45635	45991	60869	60869					-0.08111091296814266
YAEGSGGTKVF	11	Unmodified	_YAEGSGGTKVF_					0	0	0			REV__nc|ENSG00000165097|Q8NB78-4|KDM1B	REV__nc|ENSG00000165097|Q8NB78-4|KDM1B	MULTI-SECPEP	A375_MHC_IP_R1	1	558.6661987304688	2	558.272021	1114.52949	-0.069028	-3.8536E-05	-2.0652	-0.0011529	-2.1342	-0.0011915	558.2701255391127	48.729	0.9096	48.729	48.325	49.235	0					37	17	4	0	0	0	0.47836	1	17174	17174		22.658	0	1	4623100	+		62509	20546	45636	45992	60870	60870					-0.023194551446067635
YAEITEYGGF	10	Unmodified	_YAEITEYGGF_					0	0	0			REV__nc|ENSG00000147905|Q8N3Z6-2|ZCCHC7	REV__nc|ENSG00000147905|Q8N3Z6-2|ZCCHC7	MULTI-MSMS	A375_MHC_IP_R2	2	575.162353515625	2	575.258579	1148.50261	-0.11352	-6.5306E-05	0.1241	7.1389E-05	0.010575	6.0831E-06	575.2586981896619	92.173	1.9239	92.912	92.483	94.407	0.73902					93	37	4	0	0	0	0.45919	1	35515	35515		30.637	6.616	1	43945000	+		62510	19612	45637	45993	60871	60871					-0.0657056375580396
YAEKGKHY	8	Unmodified	_YAEKGKHY_					0	0	0			REV__tr|U7SM15|U7SM15_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02048PE=4SV=1	REV__tr|U7SM15|U7SM15_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02048PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	498.6504821777344	2	498.250892	994.48723	-0.668	-0.00033283	-0.1213	-6.0438E-05	-0.7893	-0.00039327	498.25080237122626	49	0.35743	49.758	49.536	49.894	0.75737					11	6	2	0	0	0	0.73946	1	18422	18422		23.148	5.0134	1	1506300	+		62511	28285	45638	45994	60872	60872					-0.01023385762334783
YAEKGKHY	8	Unmodified	_YAEKGKHY_					0	0	0			REV__tr|U7SM15|U7SM15_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02048PE=4SV=1	REV__tr|U7SM15|U7SM15_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02048PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	498.250892	994.48723	-0.13696	-6.8241E-05	-0.37668	-0.00018768	-0.51364	-0.00025592	498.2506892628871	49.76	0.45773	49.76	49.49	49.947	0	0.0010933	-0.00014342	NaN	23.148	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1470300	+		62512	28285	45638	45994							-0.01023385762334783
YAELLEEHRN	10	Unmodified	_YAELLEEHRN_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	A375_MHC_IP_R1	1	425.1291198730469	3	425.210565	1272.60986	-0.18148	-7.7168E-05	-0.25805	-0.00010973	-0.43953	-0.00018689	425.2104899384365	33.223	0.65948	33.223	32.938	33.597	0					33	12	4	0	0	0	0.60556	1	10981	10981		12.873	3.8964	1	11762000			62513	1798	45639	45995	60873	60873					-0.015535938215634815
YAELLPGLL	9	Unmodified	_YAELLPGLL_					0	0	0			REV__ENSG00000119927|ENST00000348367|GPAM	REV__ENSG00000119927|ENST00000348367|GPAM	MULTI-MSMS	A375_MHC_IP_R2	2	988.8250732421875	1	988.57136	987.564084	-0.046827	-4.6292E-05	0.54353	0.00053732	0.49671	0.00049103	988.5721639916943	127.73	0.9162	127.99	127.87	128.78	0.26593					27	17	3	0	0	0	0.2264	1	50400	50400		36.044	1.9418	1	43591000	+		62514	18104	45640	45996	60874	60874					0.06980412734139918
YAERARRRRFW	11	Unmodified	_YAERARRRRFW_					0	0	0			REV__nc|ENSG00000165801|Q8TER5-4|ARHGEF40	REV__nc|ENSG00000165801|Q8TER5-4|ARHGEF40	MULTI-SECPEP	A375_MHC_IP_R1	1	392.9598083496094	4	392.468275	1565.844	-0.10438	-4.0965E-05	-0.99866	-0.00039194	-1.103	-0.00043291	392.467919343755	24.117	0.4062	24.117	23.991	24.397	0					9	7	2	0	0	0	1.0012	1	6807	6807		0.40827	0	1	7309200	+		62515	20622	45641	45997	60875	60875					0.08370766848292988
YAESDHSEDED	11	Unmodified	_YAESDHSEDED_					0	0	0		ENSG00000142599|ENST00000400908|RERE;ENST00000480342.5_1_1:8525723-8716473:-|nuORF;RERE|p.S84Vfs*4|1|0.36|ENSG00000142599|chr1:8656049-8656050|-/T|frameshift_variant	ENSG00000142599|ENST00000400908|RERE	ENSG00000142599|ENST00000400908|RERE	MSMS	A375_MHC_IP_R2	2	649.1278076171875	2	648.728569	1295.44258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.779	1	12.277	11.777	12.777	0.49811								0	0	0	0.1636	1	3647	3647		0	0	1				62516	5314	45642	45998	60876	60876					-0.19331950947639598
YAESIDRTV	9	Unmodified	_YAESIDRTV_					0	0	0		nc|ENSG00000138079|Q07837-4|SLC3A1;nc|ENSG00000138079|Q07837-2|SLC3A1;nc|ENSG00000138079|Q07837-5|SLC3A1;nc|ENSG00000138079|Q07837-7|SLC3A1;nc|ENSG00000138079|Q07837-6|SLC3A1;ENSG00000138079|ENST00000260649|SLC3A1	nc|ENSG00000138079|Q07837-4|SLC3A1	nc|ENSG00000138079|Q07837-4|SLC3A1	MULTI-MSMS	A375_MHC_IP_R2	2	526.7216186523438	2	527.264196	1052.51384	-1.0773	-0.00056802	-0.15235	-8.0328E-05	-1.2296	-0.00064835	527.2641562019206	36.9	1.5784	37.671	37.157	38.735	0.7709					24	12	3	0	0	0	0.64808	1	13691	13691		11.64	0	1	5222900			62517	4953	45643	45999	60877	60877					-0.01031741661677188
YAETHRVY	8	Unmodified	_YAETHRVY_					0	0	0		nc|ENSG00000089050|O75884-2|RBBP9;ENSG00000089050|ENST00000337227|RBBP9	nc|ENSG00000089050|O75884-2|RBBP9	nc|ENSG00000089050|O75884-2|RBBP9	MULTI-SECPEP	A375_MHC_IP_R1	1	519.9859008789062	2	519.753798	1037.49304	-0.3326	-0.00017287	4.2588	0.0022135	3.9262	0.0020406	520.2590312939046	78.852	0.55482	78.852	78.556	79.111	0					19	10	3	0	0	0	0.92636	1	28737	28737		16.942	3.4344	1	1475300			62518	1911	45644	46000	60878	60878					-0.02420287250652109
YAETVHQLS	9	Unmodified	_YAETVHQLS_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	A375_MHC_IP_R2	2	524.6255493164062	2	524.258914	1046.50327	-0.5982	-0.00031361	-0.2546	-0.00013347	-0.85279	-0.00044708	524.258666059934	55.536	0.45615	56.287	56.084	56.54	0.75075					14	8	3	0	0	0	0.69504	1	21026	21026		18.135	1.1927	1	1917400			62519	3298	45645	46001	60879	60879					-0.018117243160759244
YAEVGRVL	8	Unmodified	_YAEVGRVL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-6|ANKRD17	ENSG00000131503|ENST00000360839|ANKHD1;ENSG00000132466|ENST00000358602|ANKRD17	ENSG00000132466|ENST00000358602|ANKRD17	MULTI-SECPEP	A375_MHC_IP_R1	1	453.1583557128906	2	453.75581	905.497067	0.034015	1.5435E-05	-0.76481	-0.00034704	-0.73079	-0.0003316	453.7555720412213	48.078	0.50579	48.078	47.768	48.274	0					15	9	2	0	0	0	0.84748	1	16894	16894		28.487	0	1	1746900			62520	4411;4336	45646	46002	60880	60880					0.04053802243049631
YAEYSHFVL	9	Unmodified	_YAEYSHFVL_					0	0	0		ENSG00000171819|ENST00000376819|ANGPTL7	ENSG00000171819|ENST00000376819|ANGPTL7	ENSG00000171819|ENST00000376819|ANGPTL7	MULTI-SECPEP	A375_MHC_IP_R1	1	376.25299072265625	3	376.850197	1127.52876	0.23597	8.8925E-05	-2.5111	-0.00094633	-2.2752	-0.0008574	376.84938667980106	24.572	0.50581	24.572	24.397	24.903	0					15	9	2	0	0	0	0.71541	1	6943	6943		7.609	2.3121	1	3679900			62521	7644	45647	46003	60881	60881					-0.029902497936518557
YAEYSHFVL	9	Unmodified	_YAEYSHFVL_					0	0	0		ENSG00000171819|ENST00000376819|ANGPTL7	ENSG00000171819|ENST00000376819|ANGPTL7	ENSG00000171819|ENST00000376819|ANGPTL7	MULTI-MATCH	A375_MHC_IP_R2	2		3	376.850197	1127.52876	-0.084155	-3.1714E-05	-2.9139	-0.0010981	-2.998	-0.0011298	376.84913421137514	24.288	0.40617	24.932	24.806	25.212	0.64368	0.17998	-0.00013332	NaN	7.609	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2109000			62522	7644	45647	46003							-0.029902497936518557
YAFEEDDMI	9	Unmodified	_YAFEEDDMI_					0	0	0			REV__ENSG00000128394|ENST00000308521|APOBEC3F	REV__ENSG00000128394|ENST00000308521|APOBEC3F	MULTI-SECPEP	A375_MHC_IP_R1	1	567.1287841796875	2	566.728797	1131.44304	-0.50744	-0.00028758	0.8593	0.00048699	0.35186	0.00019941	566.7294280172814	94.473	0.46009	94.473	94.191	94.651	0					14	8	2	0	0	0	0.67221	1	34780	34780		13.508	1.8676	1	1306400	+		62523	18450	45648	46004	60882	60882					-0.11742202761479348
YAFLHRTL	8	Unmodified	_YAFLHRTL_					0	0	0		ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B	ENSG00000179750|ENST00000333467|APOBEC3B	ENSG00000179750|ENST00000333467|APOBEC3B	MULTI-SECPEP	A375_MHC_IP_R2	2	511.1846923828125	2	510.784902	1019.55525	-0.92234	-0.00047112	0.33681	0.00017204	-0.58553	-0.00029908	510.78493073209876	49.06	0.61082	49.817	49.485	50.096	0.75737					19	11	2	0	0	0	0.72637	1	18426	18426		47.749	19.575	1	3384500			62524	8248	45649	46005	60883	60883					0.046254838883328375
YAFLREAL	8	Unmodified	_YAFLREAL_					0	0	0		ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	MULTI-SECPEP	A375_MHC_IP_R1	1	492.17120361328125	2	491.77146	981.528367	-0.3314	-0.00016297	0.017791	8.7493E-06	-0.31361	-0.00015422	491.77136389514266	81.429	0.9109	81.429	81.1	82.011	0					31	17	3	0	0	0	0.1561	1	29738	29738		92.491	52.534	1	9752600			62525	6453	45650	46006	60884	60884					0.036863752771296276
YAFLREAL	8	Unmodified	_YAFLREAL_					0	0	0		ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	MULTI-SECPEP	A375_MHC_IP_R2	2	492.1712646484375	2	491.77146	981.528367	-0.55866	-0.00027473	0.10257	5.0442E-05	-0.45608	-0.00022429	491.77146616521566	80.479	0.76287	81.223	80.91	81.673	0.74474					23	14	2	0	0	0	0.20774	1	30562	30562		92.491	50.397	1	8041900			62526	6453	45650	46006	60885	60885					0.036863752771296276
YAFLRREYY	9	Unmodified	_YAFLRREYY_					0	0	0		ENSG00000101464|ENST00000217446|PIGU;nc|ENSG00000101464|Q9H490-2|PIGU	ENSG00000101464|ENST00000217446|PIGU	ENSG00000101464|ENST00000217446|PIGU	MULTI-MSMS	A375_MHC_IP_R1	1	427.9521484375	3	427.552262	1279.63496	-0.12206	-5.2188E-05	-0.31205	-0.00013342	-0.43411	-0.0001856	427.552121480766	55.406	0.40712	55.406	55.126	55.533	0					16	7	3	0	0	0	0.070818	1	19813	19813		43.982	27.707	1	3002200			62527	2302	45651	46007	60886	60886					0.006325057716594529
YAFLRREYY	9	Unmodified	_YAFLRREYY_					0	0	0		ENSG00000101464|ENST00000217446|PIGU;nc|ENSG00000101464|Q9H490-2|PIGU	ENSG00000101464|ENST00000217446|PIGU	ENSG00000101464|ENST00000217446|PIGU	MULTI-MSMS	A375_MHC_IP_R2	2	427.9519958496094	3	427.552262	1279.63496	-0.39197	-0.00016759	-0.51047	-0.00021825	-0.90244	-0.00038584	427.5520596721109	54.539	0.45539	55.29	55.068	55.523	0.75075					18	8	3	0	0	0	0.05754	1	20611	20611		55.503	39.228	1	3229700			62528	2302	45651	46007	60887	60887					0.006325057716594529
YAFNMKATV	9	Unmodified	_YAFNMKATV_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1624145507812	2	522.762778	1043.511	-0.88185	-0.000461	0.59676	0.00031197	-0.28509	-0.00014903	523.2644624780102	61.275	0.40343	62.02	61.869	62.272	0.74503					16	7	3	0	0	0	0.20451	1	23263	23263		57.722	32.323	1	2188600			62529	2906	45652	46008	60888	60888					-0.009012883201648947
YAFNMKATV	9	Unmodified	_YAFNMKATV_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	522.762778	1043.511	-0.44303	-0.0002316	-0.5557	-0.0002905	-0.99873	-0.0005221	522.7625119343105	62.076	0.51202	62.076	61.788	62.3	0	0.028299	-0.00067621	NaN	57.722	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2092000			62530	2906	45652	46008							-0.009012883201648947
YAFPKSITV	9	Unmodified	_YAFPKSITV_					0	0	0		nc|ENSG00000155380|P53985-2|SLC16A1;ENSG00000155380|ENST00000369626|SLC16A1	nc|ENSG00000155380|P53985-2|SLC16A1	nc|ENSG00000155380|P53985-2|SLC16A1	MULTI-MSMS	A375_MHC_IP_R1	1	513.6867065429688	2	513.286943	1024.55933	-0.50648	-0.00025997	-0.18249	-9.3668E-05	-0.68897	-0.00035364	513.2870096716608	75.661	0.5531	75.661	75.464	76.017	0					21	10	3	0	0	0	0.04447	1	27585	27585		66.457	6.3828	1	2939800			62531	6141	45653	46009	60889	60889					0.048035285913556436
YAFPKSITV	9	Unmodified	_YAFPKSITV_					0	0	0		nc|ENSG00000155380|P53985-2|SLC16A1;ENSG00000155380|ENST00000369626|SLC16A1	nc|ENSG00000155380|P53985-2|SLC16A1	nc|ENSG00000155380|P53985-2|SLC16A1	MULTI-SECPEP	A375_MHC_IP_R2	2	513.6865844726562	2	513.286943	1024.55933	-0.82197	-0.00042191	0.3312	0.00017	-0.49077	-0.00025191	513.2870723287015	74.862	0.45673	75.6	75.365	75.822	0.73751					22	8	4	0	0	0	0.11849	1	28430	28430		70.332	10.258	1	2561700			62532	6141	45653	46009	60890	60890					0.048035285913556436
YAFPRVRII	9	Unmodified	_YAFPRVRII_					0	0	0		nc|ENSG00000198276|Q9NWZ5-4|UCKL1;ENSG00000198276|ENST00000354216|UCKL1;ENST00000358711.7_1_20:62571331-62572425:-|nuORF	nc|ENSG00000198276|Q9NWZ5-4|UCKL1	nc|ENSG00000198276|Q9NWZ5-4|UCKL1	MULTI-MSMS	A375_MHC_IP_R1	1	379.2976379394531	3	378.897593	1133.67095	0.524	0.00019854	0.007228	2.7387E-06	0.53123	0.00020128	378.89755496012594	78.842	0.60571	78.842	78.556	79.161	0					33	11	4	0	0	0	0.19747	1	28744	28744		38.176	16.639	1	6942700			62533	9249	45654	46010	60891	60891					0.10946007739175911
YAFPRVRII	9	Unmodified	_YAFPRVRII_					0	0	0		nc|ENSG00000198276|Q9NWZ5-4|UCKL1;ENSG00000198276|ENST00000354216|UCKL1;ENST00000358711.7_1_20:62571331-62572425:-|nuORF	nc|ENSG00000198276|Q9NWZ5-4|UCKL1	nc|ENSG00000198276|Q9NWZ5-4|UCKL1	MULTI-MSMS	A375_MHC_IP_R2	2	379.2975769042969	3	378.897593	1133.67095	0.091422	3.464E-05	-0.13823	-5.2374E-05	-0.046806	-1.7735E-05	378.897500449313	77.855	0.66457	78.598	78.315	78.98	0.74293					33	12	4	0	0	0	0.27064	1	29533	29533		32.786	16.637	1	8031900			62534	9249	45654	46010	60892	60892					0.10946007739175911
YAFPYCDETS	10	Unmodified	_YAFPYCDETS_					0	0	0		ENSG00000185483|ENST00000371079|ROR1;nc|ENSG00000185483|Q01973-3|ROR1	ENSG00000185483|ENST00000371079|ROR1	ENSG00000185483|ENST00000371079|ROR1	MULTI-MSMS	A375_MHC_IP_R1	1	399.1304016113281	3	399.15859	1194.45394	-0.15486	-6.1812E-05	0.82219	0.00032818	0.66733	0.00026637	399.15885273602237	101.77	0.50471	101.77	101.5	102	0					22	9	3	0	0	0	0.71944	1	37314	37314		1.7423	0	1	1434800			62535	8670	45655	46011	60893	60893					-0.13550800387224626
YAFSCGCAFI	10	Unmodified	_YAFSCGCAFI_					0	0	0			REV__ENST00000368850.4_3_6:111498427-111514516:+|nuORF	REV__ENST00000368850.4_3_6:111498427-111514516:+|nuORF	MSMS	A375_MHC_IP_R2	2	541.1975708007812	2	541.227713	1080.44087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.28	1	113.01	112.51	113.51	0.72458								0	0	0	0.15398	1	42329	42329		7.9102	1.187	1		+		62536	17731	45656	46012	60894	60894					-0.09612909980296536
YAFVRPVIL	9	Unmodified	_YAFVRPVIL_					0	0	0		nc|ENSG00000161999|Q96S16-2|JMJD8;ENSG00000161999|ENST00000609261|JMJD8;ENST00000565302.5_1_16:733531-734319:-|nuORF;ENST00000569441.5_1_16:733170-733950:-|nuORF;ENST00000568689.5_1_16:733170-734340:-|nuORF	nc|ENSG00000161999|Q96S16-2|JMJD8;ENST00000569441.5_1_16:733170-733950:-|nuORF	nc|ENSG00000161999|Q96S16-2|JMJD8	MULTI-SECPEP	A375_MHC_IP_R2	2	539.7194213867188	2	539.326402	1076.63825	-0.65427	-0.00035286	0.43829	0.00023638	-0.21598	-0.00011648	539.3267278597136	99.355	0.2558	100.12	99.961	100.22	0.75977					6	4	2	0	0	0	0.62767	1	37632	37632		23.148	9.6405	1	927210			62537	6501;13582	45657	46013	60895	60895					0.10299800616326138
YAFVRPVIL	9	Unmodified	_YAFVRPVIL_					0	0	0		nc|ENSG00000161999|Q96S16-2|JMJD8;ENSG00000161999|ENST00000609261|JMJD8;ENST00000565302.5_1_16:733531-734319:-|nuORF;ENST00000569441.5_1_16:733170-733950:-|nuORF;ENST00000568689.5_1_16:733170-734340:-|nuORF	nc|ENSG00000161999|Q96S16-2|JMJD8;ENST00000569441.5_1_16:733170-733950:-|nuORF	nc|ENSG00000161999|Q96S16-2|JMJD8	MULTI-MATCH	A375_MHC_IP_R1	1		2	539.326402	1076.63825	-0.6392	-0.00034474	0.92902	0.00050104	0.28982	0.00015631	539.3266887246464	100.36	0.35521	100.36	100.18	100.53	0	0.12015	0.00042878	NaN	23.148	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1176600			62538	6501;13582	45657	46013							0.10299800616326138
YAGAILEV	8	Unmodified	_YAGAILEV_					0	0	0		ENSG00000183291|ENST00000331835|SELENOF;ENST00000467557.1_1_1:87346375-87379497:-|nuORF;ENST00000331835.9_2_1:87346375-87379803:-|nuORF;nc|ENSG00000183291|O60613-2|SELENOF;ENST00000401030.4_1_1:87346375-87352853:-|nuORF	ENSG00000183291|ENST00000331835|SELENOF	ENSG00000183291|ENST00000331835|SELENOF	MULTI-MSMS	A375_MHC_IP_R1	1	835.63818359375	1	835.455996	834.448719	-0.28656	-0.00023941	0.09144	7.6394E-05	-0.19512	-0.00016301	835.4560079555994	91.931	0.40413	91.931	91.756	92.16	0					11	7	2	0	0	0	0.20258	1	33779	33779		67.035	16.18	1	2787400			62539	8481	45658	46014	60896	60896					0.02487308603144811
YAGAILEV	8	Unmodified	_YAGAILEV_					0	0	0		ENSG00000183291|ENST00000331835|SELENOF;ENST00000467557.1_1_1:87346375-87379497:-|nuORF;ENST00000331835.9_2_1:87346375-87379803:-|nuORF;nc|ENSG00000183291|O60613-2|SELENOF;ENST00000401030.4_1_1:87346375-87352853:-|nuORF	ENSG00000183291|ENST00000331835|SELENOF	ENSG00000183291|ENST00000331835|SELENOF	MULTI-MATCH	A375_MHC_IP_R2	2		1	835.455996	834.448719	-0.64873	-0.00054199	0.59628	0.00049817	-0.052454	-4.3823E-05	835.4563812663569	91.108	0.55584	91.843	91.566	92.122	0.7345	-0.044104	0.00024765	NaN	67.035	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3391100			62540	8481	45658	46014							0.02487308603144811
YAGARFVF	8	Unmodified	_YAGARFVF_					0	0	0		nc|ENSG00000146701|P40926-2|MDH2;ENSG00000146701|ENST00000315758|MDH2;ENST00000424167.2_1_7:75689738-75694307:+|nuORF	nc|ENSG00000146701|P40926-2|MDH2	nc|ENSG00000146701|P40926-2|MDH2	MULTI-SECPEP	A375_MHC_IP_R1	1	466.14508056640625	2	465.745245	929.475937	-0.24324	-0.00011329	-0.25359	-0.00011811	-0.49683	-0.0002314	465.74522748566403	73.835	0.86118	73.835	73.488	74.349	0					36	16	4	0	0	0	0.50167	1	26909	26909		50.855	29.108	1	4085200			62541	5632	45659	46015	60897	60897					0.008378369341926373
YAGARFVF	8	Unmodified	_YAGARFVF_					0	0	0		nc|ENSG00000146701|P40926-2|MDH2;ENSG00000146701|ENST00000315758|MDH2;ENST00000424167.2_1_7:75689738-75694307:+|nuORF	nc|ENSG00000146701|P40926-2|MDH2	nc|ENSG00000146701|P40926-2|MDH2	MULTI-MSMS	A375_MHC_IP_R2	2	466.1451110839844	2	465.745245	929.475937	-0.67078	-0.00031241	0.14626	6.8118E-05	-0.52452	-0.00024429	465.74537546138515	72.973	0.76273	73.709	73.379	74.141	0.73541					30	14	3	0	0	0	0.28202	1	27707	27707		60.39	38.643	1	3663100			62542	5632	45659	46015	60898	60898					0.008378369341926373
YAGGVAEYR	9	Unmodified	_YAGGVAEYR_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-MSMS	A375_MHC_IP_R1	1	493.6402587890625	2	493.240524	984.466495	-0.37909	-0.00018698	0.15894	7.8397E-05	-0.22015	-0.00010858	493.24051154493907	31.947	0.41019	31.947	31.769	32.179	0					13	7	2	0	0	0	0.32899	1	10288	10288		28.487	0	1	3853800			62543	2235	45660	46016	60899	60899					-0.026359761420053474
YAGPSAWADEQ	11	Unmodified	_YAGPSAWADEQ_					0	0	0			REV__nc|ENSG00000156735|O95429-2|BAG4	REV__nc|ENSG00000156735|O95429-2|BAG4	MSMS	A375_MHC_IP_R1	1	597.7266235351562	2	597.756735	1193.49892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.807	1	53.807	53.307	54.307	0								0	0	0	0.16108	1	19192	19192		13.042	0	1		+		62544	19995	45661	46017	60900	60900					-0.09009233529695848
YAGSGNVL	8	Unmodified	_YAGSGNVL_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000496925.5_1_3:184023699-184025408:+|nuORF	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-MSMS	A375_MHC_IP_R2	2	780.78759765625	1	780.388645	779.381368	-0.99496	-0.00077646	0.15902	0.0001241	-0.83594	-0.00065236	780.3887063397215	44.41	0.55796	45.179	44.934	45.492	0.7691					16	10	2	0	0	0	0.047217	1	16580	16580		123.45	71.182	1	2898300			62545	7937	45662	46018	60901	60901					-0.01714721607811498
YAGSGNVL	8	Unmodified	_YAGSGNVL_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000496925.5_1_3:184023699-184025408:+|nuORF	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-MATCH	A375_MHC_IP_R1	1		1	780.388645	779.381368	-0.079193	-6.1801E-05	-0.5024	-0.00039207	-0.5816	-0.00045387	780.3882494060987	45.289	0.50398	45.289	45.03	45.534	0	0.054717	-0.00020048	NaN	123.45	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2554700			62546	7937	45662	46018							-0.01714721607811498
YAGSHQVKVP	10	Unmodified	_YAGSHQVKVP_					0	0	0			REV__nc|ENSG00000012124|P20273-2|CD22	REV__nc|ENSG00000012124|P20273-2|CD22	MULTI-SECPEP	A375_MHC_IP_R1	1	362.9569091796875	3	362.529458	1084.56654	0.14972	5.4276E-05	-0.22117	-8.018E-05	-0.071452	-2.5903E-05	362.52944555874814	43.884	0.30427	43.884	43.655	43.959	0					9	5	2	0	0	0	0.89109	1	15309	15309		3.8763	0	1	1339200	+		62547	16219	45663	46019	60902	60902					0.027642611918281546
YAHAGLGG	8	Unmodified	_YAHAGLGG_					0	0	0		nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	nc|ENSG00000110514|Q8WXG6-8|MADD	MSMS	A375_MHC_IP_R2	2	373.1836853027344	2	373.18502	744.355488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.848	1	18.444	17.944	18.944	0.59616								0	0	0	0.16876	1	5273	5273		0	0	1				62548	2935	45664	46020	60903	60903					-0.026915710594153097
YAIDNPLHY	9	Unmodified	_YAIDNPLHY_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q831Sfs*11|1|0.38|ENSG00000125107|chr16:58555897-58555898|-/A|frameshift_variant	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	A375_MHC_IP_R2	2	553.6689453125	2	553.269281	1104.52401	-1.0338	-0.00057199	-0.11147	-6.1675E-05	-1.1453	-0.00063366	553.2691902595484	71.96	1.0127	72.695	72.264	73.276	0.73421					37	19	2	0	0	0	0.0094639	3	27229	27229;27436;27466		106.94	35.018	1	42750000			62549	3941	45665	46021	60904;60905;60906	60904					-0.02407133936435457
YAIEHVVPD	9	Unmodified	_YAIEHVVPD_					0	0	0			REV__ENST00000470978.1_1_10:27023607-27035399:+|nuORF	REV__ENST00000470978.1_1_10:27023607-27035399:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1042.2462158203125	1	1042.52039	1041.51311	0.042063	4.3851E-05	-3.1782	-0.0033133	-3.1361	-0.0032695	1043.5188248292	122.47	0.25413	122.85	122.62	122.87	0.3766					5	4	2	0	0	0	0.65246	1	46931	46931		10.824	0	1	69584000	+		62550	19632	45666	46022	60907	60907					-0.00598536310712916
YAIKNIHGV	9	Unmodified	_YAIKNIHGV_					0	0	0		nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;ENST00000591701.5_1_19:10887861-10906203:+|nuORF	nc|ENSG00000079805|P50570-3|DNM2	nc|ENSG00000079805|P50570-3|DNM2	MULTI-SECPEP	A375_MHC_IP_R1	1	508.1896667480469	2	507.790184	1013.56581	-0.51483	-0.00026142	-0.20235	-0.00010275	-0.71717	-0.00036417	507.78982476461505	32.235	0.41016	32.235	31.973	32.383	0					12	7	2	0	0	0	0.14422	1	10399	10399		43.858	25.712	1	2580400			62551	1703	45667	46023	60908	60908					0.05957466542747625
YAITRKAL	8	Unmodified	_YAITRKAL_					0	0	0		ENSG00000011275|ENST00000389902|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;nc|ENSG00000011275|Q9NWF9-3|RNF216	ENSG00000011275|ENST00000389902|RNF216	ENSG00000011275|ENST00000389902|RNF216	MULTI-MSMS	A375_MHC_IP_R1	1	468.6867980957031	2	468.287277	934.560001	-0.38888	-0.00018211	-0.41384	-0.0001938	-0.80272	-0.00037591	468.2870612809473	27.318	0.40558	27.318	27.128	27.533	0					12	7	2	0	0	0	0.16945	1	8282	8282		71.922	28.064	1	2457400			62552	997	45668	46024	60909	60909					0.09010368031078997
YAITRKAL	8	Unmodified	_YAITRKAL_					0	0	0		ENSG00000011275|ENST00000389902|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;nc|ENSG00000011275|Q9NWF9-3|RNF216	ENSG00000011275|ENST00000389902|RNF216	ENSG00000011275|ENST00000389902|RNF216	MULTI-MSMS	A375_MHC_IP_R2	2	468.68701171875	2	468.287277	934.560001	-0.98376	-0.00046068	-0.094003	-4.4021E-05	-1.0778	-0.0005047	468.2871825900842	26.627	0.35668	27.287	27.109	27.466	0.65992					10	6	2	0	0	0	0.1677	1	9039	9039		74.929	30.522	1	3648100			62553	997	45668	46024	60910	60910					0.09010368031078997
YAIVRFNQY	9	Unmodified	_YAIVRFNQY_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	MULTI-SECPEP	A375_MHC_IP_R1	1	587.7060546875	2	587.306198	1172.59784	0.26052	0.00015301	-0.41089	-0.00024132	-0.15036	-8.831E-05	587.3056916812099	69.529	0.40623	69.529	69.275	69.681	0					19	7	3	0	0	0	0.047455	1	25214	25214		88.904	27.546	1	3439900			62554	5055	45669	46025	60911	60911					0.01844834225903469
YAIVRFNQY	9	Unmodified	_YAIVRFNQY_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	MULTI-MSMS	A375_MHC_IP_R2	2	587.7055053710938	2	587.306198	1172.59784	-0.46169	-0.00027115	-0.33962	-0.00019946	-0.80131	-0.00047061	587.3059218312851	68.795	0.45652	69.53	69.323	69.779	0.73511					15	8	2	0	0	0	0.0025821	1	26088	26088		139.54	21.945	1	3216300			62555	5055	45669	46025	60912	60912					0.01844834225903469
YAKAYVLFCVL	11	Unmodified	_YAKAYVLFCVL_					0	0	0		nc|ENSG00000180739|Q9H228-2|S1PR5;ENSG00000180739|ENST00000333430|S1PR5	nc|ENSG00000180739|Q9H228-2|S1PR5	nc|ENSG00000180739|Q9H228-2|S1PR5	MULTI-SECPEP	A375_MHC_IP_R1	1	431.12530517578125	3	430.570265	1288.68897	-0.45016	-0.00019382	-0.61198	-0.0002635	-1.0621	-0.00045733	430.90416583856677	23.625	0.3057	23.625	23.432	23.737	0					10	5	3	0	0	0	0.99526	1	6456	6456		3.0723	2.9324	1	3688200			62556	8311	45670	46026	60913	60913					0.056169618790136155
YAKERVHPKL	10	Unmodified	_YAKERVHPKL_					0	0	0		ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2;ENST00000468414.1_1_3:127336783-127340613:+|nuORF	ENST00000474964.5_1_3:127323572-127340613:+|nuORF	ENST00000474964.5_1_3:127323572-127340613:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	414.2836608886719	3	414.24354	1239.70879	0.26678	0.00011051	0.099016	4.1017E-05	0.3658	0.00015153	414.2436125803434	19.809	0.50913	19.809	19.521	20.03	0					13	9	2	0	0	0	0.71364	1	4994	4994		6.1918	2.6048	1	850510			62557	1558	45671	46027	60914	60914					0.09852473933983674
YAKLRFDQ	8	Unmodified	_YAKLRFDQ_					0	0	0			REV__nc|ENSG00000177225|Q8NB37-4|GATD1	REV__nc|ENSG00000177225|Q8NB37-4|GATD1	MULTI-MSMS	A375_MHC_IP_R2	2	522.433837890625	2	520.779816	1039.54508	-0.63296	-0.00032963	0.23561	0.0001227	-0.39735	-0.00020693	520.7797727926937	77.807	0.71436	78.55	78.265	78.98	0.74293					48	13	5	0	0	0	0.76248	1	29513	29513		16.942	0	1	16146000	+		62558	21447	45672	46028	60915	60915					0.026888761630971203
YAKNPSVNW	9	Unmodified	_YAKNPSVNW_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	A375_MHC_IP_R1	1	540.1689453125	2	539.769448	1077.52434	-1.0064	-0.00054322	-0.94941	-0.00051246	-1.9558	-0.0010557	539.7694263135112	41.342	0.35616	41.342	41.164	41.521	0					12	6	3	0	0	0	0.02114	1	14295	14295		82.529	40.435	1	2777800			62559	3884	45673	46029	60916	60916					-0.011317142165808036
YAKNPSVNW	9	Unmodified	_YAKNPSVNW_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MATCH	A375_MHC_IP_R2	2		2	539.769448	1077.52434	-0.9786	-0.00052822	0.43668	0.00023571	-0.54192	-0.00029251	539.7697590051425	40.637	0.35653	41.412	41.133	41.489	0.77451	0.035017	0.00075118	NaN	82.529	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2420300			62560	3884	45673	46029							-0.011317142165808036
YAKPRLPL	8	Unmodified	_YAKPRLPL_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-SECPEP	A375_MHC_IP_R1	1	479.60418701171875	2	479.297645	956.580737	-0.49076	-0.00023522	-0.22654	-0.00010858	-0.71729	-0.0003438	479.2975841064768	33.317	0.40637	33.317	33.09	33.496	0					10	7	2	0	0	0	0.972	1	10791	10791		2.5775	0	1	1752000			62561	9962	45674	46030	60917	60917					0.10070958410744879
YAKPYFLRL	9	Unmodified	_YAKPYFLRL_					0	0	0		ENSG00000144736|ENST00000325599|SHQ1	ENSG00000144736|ENST00000325599|SHQ1	ENSG00000144736|ENST00000325599|SHQ1	MULTI-SECPEP	A375_MHC_IP_R2	2	391.2935791015625	3	390.893848	1169.65972	-0.37389	-0.00014615	-1.7821	-0.00069662	-2.156	-0.00084277	390.8927485469216	72.242	0.91185	72.976	72.516	73.428	0.73421					36	17	3	0	0	0	0.40377	1	27339	27339		41.956	19.297	1	4904300			62562	5511	45675	46031	60918	60918					0.08167185645015707
YAKRAAPFNNW	11	Unmodified	_YAKRAAPFNNW_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000556343.1_1_14:69350028-69351010:-|nuORF;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4	nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000130402|ENST00000252699|ACTN4	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	A375_MHC_IP_R1	1	669.7410278320312	2	669.341104	1336.66765	-0.35642	-0.00023857	-0.14223	-9.5203E-05	-0.49866	-0.00033377	669.3410044585531	42.999	0.45761	42.999	42.739	43.197	0					20	8	3	0	0	0	0.063241	1	14904	14904		76.825	58.678	1	5313500			62563	1529;4242	45676	46032	60919	60919					0.012787128945092263
YAKRAAPFNNW	11	Unmodified	_YAKRAAPFNNW_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000556343.1_1_14:69350028-69351010:-|nuORF;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4	nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000130402|ENST00000252699|ACTN4	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-SECPEP	A375_MHC_IP_R1	1	446.9627990722656	3	446.563161	1336.66765	0.16747	7.4787E-05	-0.15092	-6.7395E-05	0.016552	7.3914E-06	446.5630326031431	42.991	0.61115	42.991	42.689	43.3	0					36	11	4	0	0	0	0.95135	1	14878	14878		21.799	16.397	1	13129000			62564	1529;4242	45676	46032	60920	60920					0.012787128945092263
YAKRAAPFNNW	11	Unmodified	_YAKRAAPFNNW_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000556343.1_1_14:69350028-69351010:-|nuORF;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4	nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000130402|ENST00000252699|ACTN4	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	A375_MHC_IP_R2	2	669.7405395507812	2	669.341104	1336.66765	-0.71954	-0.00048162	0.11358	7.6026E-05	-0.60596	-0.00040559	669.3410819486099	42.104	0.4602	42.877	42.605	43.065	0.77274					18	8	3	0	0	0	0.57844	1	15628	15628		24.991	16.246	1	6416900			62565	1529;4242	45676	46032	60921	60921					0.012787128945092263
YAKRAAPFNNW	11	Unmodified	_YAKRAAPFNNW_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000556343.1_1_14:69350028-69351010:-|nuORF;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4	nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000130402|ENST00000252699|ACTN4	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-SECPEP	A375_MHC_IP_R2	2	447.29730224609375	3	446.563161	1336.66765	-0.30257	-0.00013512	-0.29364	-0.00013113	-0.59621	-0.00026624	446.56312046457157	42.105	0.5626	42.878	42.553	43.116	0.77269					36	10	5	0	0	0	0.98663	1	15601	15601		12.228	9.9749	1	23009000			62566	1529;4242	45676	46032	60922	60922					0.012787128945092263
YAKRAFVHW	9	Unmodified	_YAKRAFVHW_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENST00000530835.1_1_11:90016856-90017168:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-SECPEP	A375_MHC_IP_R2	2	393.6137390136719	3	393.213692	1176.61925	-0.72107	-0.00028354	0.42737	0.00016805	-0.29371	-0.00011549	393.2138474832624	33.718	0.50536	34.47	34.146	34.651	0.75225					17	8	3	0	0	0	0.089948	1	12107	12107		45.7	34.205	1	6293200			62567	3846	45677	46033	60923	60923					0.03800264045253243
YAKVITVESQK	11	Unmodified	_YAKVITVESQK_					0	0	0		ENSG00000139718|ENST00000604567|SETD1B;nc|ENSG00000139718|Q9UPS6-2|SETD1B	ENSG00000139718|ENST00000604567|SETD1B	ENSG00000139718|ENST00000604567|SETD1B	MULTI-MSMS	A375_MHC_IP_R1	1	422.9749755859375	3	422.574844	1264.7027	-0.17822	-7.531E-05	0.60233	0.00025453	0.42411	0.00017922	422.57512651611404	25.618	0.55863	25.618	25.408	25.966	0					23	10	3	0	0	0	0.72713	1	7528	7528		11.631	1.3161	1	4290500			62568	5104	45678	46034	60924	60924					0.080939109117935
YAKVITVESQK	11	Unmodified	_YAKVITVESQK_					0	0	0		ENSG00000139718|ENST00000604567|SETD1B;nc|ENSG00000139718|Q9UPS6-2|SETD1B	ENSG00000139718|ENST00000604567|SETD1B	ENSG00000139718|ENST00000604567|SETD1B	MULTI-MATCH	A375_MHC_IP_R2	2		3	422.574844	1264.7027	-0.54007	-0.00022822	1.0521	0.00044457	0.51198	0.00021635	422.57524216536916	24.796	0.66101	25.439	25.263	25.924	0.64368	-0.08933	0.00021136	NaN	11.631	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3730800			62569	5104	45678	46034							0.080939109117935
YALDLRRRL	9	Unmodified	_YALDLRRRL_					0	0	0			REV__ENSG00000135144|ENST00000548759|DTX1	REV__ENSG00000135144|ENST00000548759|DTX1	MULTI-MSMS	A375_MHC_IP_R1	1	392.949462890625	3	392.571768	1174.69348	-0.078539	-3.0832E-05	0.47036	0.00018465	0.39182	0.00015382	392.5719390594689	19.293	0.28278	19.293	19.238	19.521	0					8	5	2	0	0	0	0.66474	1	4649	4649		10.151	1.995	1	20620000	+		62570	18827	45679	46035	60925	60925					0.11311607136781276
YALDLSTFL	9	Unmodified	_YALDLSTFL_					0	0	0		ENSG00000137331|ENST00000259874|IER3	ENSG00000137331|ENST00000259874|IER3	ENSG00000137331|ENST00000259874|IER3	MULTI-SECPEP	A375_MHC_IP_R1	1	1042.944580078125	1	1042.54554	1041.53826	-0.095706	-9.9778E-05	-0.032871	-3.427E-05	-0.12858	-0.00013405	1042.5452911072016	132.91	0.56197	132.91	132.59	133.15	0					18	10	4	0	0	0	0.0065996	1	51253	51253		147.83	44.083	1	41673000			62571	4877	45680	46036	60926	60926					0.019155184918417945
YALDLSTFL	9	Unmodified	_YALDLSTFL_					0	0	0		ENSG00000137331|ENST00000259874|IER3	ENSG00000137331|ENST00000259874|IER3	ENSG00000137331|ENST00000259874|IER3	MULTI-SECPEP	A375_MHC_IP_R2	2	522.17578125	2	521.776408	1041.53826	-0.54708	-0.00028545	-0.19644	-0.0001025	-0.74352	-0.00038795	521.7762431929153	132.75	0.203	132.92	132.79	132.99	0.16487					5	3	2	0	0	0	0.75466	1	52250	52250		7.9102	2.6795	1	3044400			62572	4877	45680	46036	60927	60927					0.019155184918417945
YALDLSTFL	9	Unmodified	_YALDLSTFL_					0	0	0		ENSG00000137331|ENST00000259874|IER3	ENSG00000137331|ENST00000259874|IER3	ENSG00000137331|ENST00000259874|IER3	MULTI-MATCH	A375_MHC_IP_R1	1		2	521.776408	1041.53826	-0.75431	-0.00039358	0.12164	6.3469E-05	-0.63267	-0.00033011	521.7764260929048	132.92	0.20535	132.92	132.79	133	0	0.0019071	0.00015128	NaN	7.9102	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5114800			62573	4877	45680	46036							0.019155184918417945
YALDLSTFL	9	Unmodified	_YALDLSTFL_					0	0	0		ENSG00000137331|ENST00000259874|IER3	ENSG00000137331|ENST00000259874|IER3	ENSG00000137331|ENST00000259874|IER3	MULTI-MATCH	A375_MHC_IP_R2	2		1	1042.54554	1041.53826	0.10544	0.00010993	-0.74246	-0.00077405	-0.63702	-0.00066412	1042.544929212295	132.75	0.35507	132.92	132.79	133.15	0.16487	0.0013833	-0.00068401	NaN	147.83	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48072000			62574	4877	45680	46036							0.019155184918417945
YALFLAVYL	9	Unmodified	_YALFLAVYL_					0	0	0		nc|ENSG00000142163|Q8WZA6|OR1E3	nc|ENSG00000142163|Q8WZA6|OR1E3	nc|ENSG00000142163|Q8WZA6|OR1E3	MULTI-SECPEP	A375_MHC_IP_R2	2	537.0687255859375	2	536.807511	1071.60047	-0.90795	-0.00048739	-3.846	-0.0020645	-4.7539	-0.0025519	536.8043056449202	80.378	0.71217	81.122	80.91	81.622	0.74474					25	13	3	0	0	0	0.53495	1	30546	30546		14.582	0	1	1619400			62575	14648	45681	46037	60928	60928					0.06753289630842119
YALGRTVS	8	Unmodified	_YALGRTVS_					0	0	0			REV__nc|ENSG00000204217|Q13873-2|BMPR2	REV__nc|ENSG00000204217|Q13873-2|BMPR2	MULTI-SECPEP	A375_MHC_IP_R2	2	434.14019775390625	2	433.74016	865.465767	-0.2023	-8.7744E-05	-0.018436	-7.9966E-06	-0.22073	-9.574E-05	433.7401200012908	27.29	0.45885	27.968	27.792	28.251	0.67857					20	8	3	0	0	0	0.8957	1	9298	9298		28.487	0	1	11497000	+		62576	22497	45682	46038	60929	60929					0.0276522920894422
YALKNLQDKIR	11	Unmodified	_YALKNLQDKIR_					0	0	0		CEP57|p.S71Y|1|0.04|ENSG00000166037|chr11:95812941-95812941|C/A|missense_variant	CEP57|p.S71Y|1|0.04|ENSG00000166037|chr11:95812941-95812941|C/A|missense_variant	CEP57|p.S71Y|1|0.04|ENSG00000166037|chr11:95812941-95812941|C/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	455.00128173828125	3	454.601504	1360.78268	-0.22684	-0.00010312	-0.19081	-8.6743E-05	-0.41765	-0.00018987	454.60145571889836	25.312	0.45742	25.312	25.104	25.562	0					17	8	3	0	0	0	0.51633	1	7390	7390		23.964	7.1258	1	4924200			62577	364	45683	46039	60930	60930					0.11672397305619597
YALKNLQDKIR	11	Unmodified	_YALKNLQDKIR_					0	0	0		CEP57|p.S71Y|1|0.04|ENSG00000166037|chr11:95812941-95812941|C/A|missense_variant	CEP57|p.S71Y|1|0.04|ENSG00000166037|chr11:95812941-95812941|C/A|missense_variant	CEP57|p.S71Y|1|0.04|ENSG00000166037|chr11:95812941-95812941|C/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	455.0012512207031	3	454.601504	1360.78268	-0.58238	-0.00026475	-0.75273	-0.00034219	-1.3351	-0.00060695	454.6014375629825	24.594	0.45752	25.237	25.11	25.568	0.64368					11	8	2	0	0	0	0.49816	1	8138	8138		19.987	1.2657	1	8645100			62578	364	45683	46039	60931	60931					0.11672397305619597
YALKSFTGL	9	Unmodified	_YALKSFTGL_					0	0	0		UBR4|p.L4241F|1|0.12|ENSG00000127481|chr1:19104591-19104591|G/A|missense_variant	UBR4|p.L4241F|1|0.12|ENSG00000127481|chr1:19104591-19104591|G/A|missense_variant	UBR4|p.L4241F|1|0.12|ENSG00000127481|chr1:19104591-19104591|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	499.64691162109375	2	500.279118	998.543683	-0.66134	-0.00033086	0.3962	0.00019821	-0.26515	-0.00013265	500.2784517862194	67.072	0.76621	67.072	66.734	67.5	0					30	14	3	0	0	0	0.77834	1	24426	24426		8.5933	8.5933	1	1509200			62579	30110	45684	46040	60932	60932					0.04435242074339385
YALPHAIL	8	Unmodified	_YALPHAIL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ACTG1|p.G168S|1|0.41|ENSG00000184009|chr17:81511488-81511488|C/T|missense_variant;ENST00000436287.1_1_1:224051789-224052101:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENST00000436287.1_1_1:224051789-224052101:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	A375_MHC_IP_R1	1	449.6630859375	2	449.263271	896.511988	-0.22434	-0.00010079	-0.20804	-9.3466E-05	-0.43238	-0.00019425	449.26313410807836	81.042	0.45811	81.042	80.744	81.202	0					14	8	2	0	0	0	0.11677	1	29610	29610		91.927	35.386	1	2621500			62580	1615;11926	45685	46041	60933	60933					0.05959294111039526
YALPHAIL	8	Unmodified	_YALPHAIL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ACTG1|p.G168S|1|0.41|ENSG00000184009|chr17:81511488-81511488|C/T|missense_variant;ENST00000436287.1_1_1:224051789-224052101:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENST00000436287.1_1_1:224051789-224052101:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	A375_MHC_IP_R2	2	449.6626892089844	2	449.263271	896.511988	-0.28993	-0.00013026	0.45245	0.00020327	0.16252	7.3014E-05	449.26328864481394	80.056	0.45463	80.8	80.607	81.062	0.74474					18	8	3	0	0	0	0.16638	1	30400	30400		77.196	27.527	1	3055600			62581	1615;11926	45685	46041	60934	60934					0.05959294111039526
YALPVLKRP	9	Unmodified	_YALPVLKRP_					0	0	0			REV__ENSG00000163501|ENST00000295731|IHH	REV__ENSG00000163501|ENST00000295731|IHH	MULTI-MSMS	A375_MHC_IP_R1	1	353.2894592285156	3	352.890327	1055.64915	-0.20735	-7.3173E-05	-1.7405	-0.00061419	-1.9478	-0.00068737	352.88956094756645	25.617	0.76231	25.617	25.204	25.966	0					28	14	4	0	0	0	0.69317	1	7526	7526		7.609	0	1	5534400	+		62582	20370	45686	46042	60935	60935					0.12355202990602265
YALTPPRP	8	Unmodified	_YALTPPRP_					0	0	0			REV__ENST00000288078.10_1_16:70488360-70488447:+|nuORF	REV__ENST00000288078.10_1_16:70488360-70488447:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	458.32470703125	2	457.758352	913.502152	-0.57106	-0.00026141	0.42085	0.00019265	-0.15021	-6.876E-05	457.75844334544706	30.384	0.80833	30.384	30.2	31.009	0					28	15	3	0	0	0	0.77488	1	9833	9833		13.508	0.97634	1	12196000	+		62583	23345	45687	46043	60936	60936					0.04194106105660467
YALYRKTI	8	Unmodified	_YALYRKTI_					0	0	0			REV__tr|U7SQI7|U7SQI7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01652PE=4SV=1	REV__tr|U7SQI7|U7SQI7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01652PE=4SV=1	MSMS	A375_MHC_IP_R1	1	514.42919921875	2	514.300384	1026.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.801	1	75.801	75.301	76.301	0								0	0	0	0.16876	1	27619	27619		15.768	1.1865	1		+		62584	28376	45688	46044	60937	60937					0.07398637202550162
YANLHSKEY	9	Unmodified	_YANLHSKEY_					0	0	0		nc|ENSG00000152904|O95749-2|GGPS1;ENSG00000152904|ENST00000282841|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	MULTI-MSMS	A375_MHC_IP_R1	1	563.1721801757812	2	562.772188	1123.52982	-0.46466	-0.0002615	0.16815	9.4632E-05	-0.29651	-0.00016687	562.7723177572902	19.908	0.35443	19.908	19.725	20.079	0					14	6	3	0	0	0	0.0099638	1	5041	5041		121.35	53.265	1	4151900			62585	5988	45689	46045	60938	60938					-0.027000354247547875
YANLHSKEY	9	Unmodified	_YANLHSKEY_					0	0	0		nc|ENSG00000152904|O95749-2|GGPS1;ENSG00000152904|ENST00000282841|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	MULTI-SECPEP	A375_MHC_IP_R1	1	375.9174499511719	3	375.517218	1123.52982	0.32057	0.00012038	0.34097	0.00012804	0.66154	0.00024842	375.51732906066985	19.938	0.91281	19.938	19.674	20.587	0					36	17	3	0	0	0	0.39273	1	5020	5020		43.982	43.982	1	10921000			62586	5988	45689	46045	60939	60939					-0.027000354247547875
YANLHSKEY	9	Unmodified	_YANLHSKEY_					0	0	0		nc|ENSG00000152904|O95749-2|GGPS1;ENSG00000152904|ENST00000282841|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	MSMS	A375_MHC_IP_R2	2	563.1719970703125	2	562.772188	1123.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.125	1	19.728	19.228	20.228	0.60308								0	0	0	0.1493	1	5839	5839		22.736	9.6938	1				62587	5988	45689	46045	60940	60940					-0.027000354247547875
YANLHSKEY	9	Unmodified	_YANLHSKEY_					0	0	0		nc|ENSG00000152904|O95749-2|GGPS1;ENSG00000152904|ENST00000282841|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	MULTI-SECPEP	A375_MHC_IP_R2	2	374.9388427734375	3	375.517218	1123.52982	0.014486	5.4399E-06	-0.11932	-4.4806E-05	-0.10483	-3.9366E-05	375.51710245453114	19.005	0.40093	19.608	19.483	19.884	0.60308					12	7	2	0	0	0	0.57806	1	5741	5741		19.626	12.996	1	10077000			62588	5988	45689	46045	60941	60941					-0.027000354247547875
YANLKRAKY	9	Unmodified	_YANLKRAKY_					0	0	0			REV__ENSG00000206043|ENST00000579455|C18orf63	REV__ENSG00000206043|ENST00000579455|C18orf63	MULTI-MSMS	A375_MHC_IP_R1	1	376.2733154296875	3	376.217102	1125.62948	0.4849	0.00018243	0.05801	2.1825E-05	0.54291	0.00020425	376.2170792510223	51.523	0.45664	51.523	51.322	51.778	0					13	8	2	0	0	0	0.55818	1	18290	18290		11.495	0.6952	1	1455900	+		62589	22590	45690	46046	60942	60942					0.0716882697984147
YANLKRAKY	9	Unmodified	_YANLKRAKY_					0	0	0			REV__ENSG00000206043|ENST00000579455|C18orf63	REV__ENSG00000206043|ENST00000579455|C18orf63	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	376.217102	1125.62948	0.4849	0.00018243	0.05801	2.1825E-05	0.54291	0.00020425	376.2170792510223	51.523	0.45664	51.523	51.322	51.778	0	0.025705	-0.00016597	NaN	11.495	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1455900	+		62590	22590	45690	46046							0.0716882697984147
YANRLLVYS	9	Unmodified	_YANRLLVYS_					0	0	0			REV__NCKAP1L|p.P1109S|1|0.21|ENSG00000123338|chr12:54542626-54542626|C/T|missense_variant	REV__NCKAP1L|p.P1109S|1|0.21|ENSG00000123338|chr12:54542626-54542626|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	550.1234741210938	2	549.800749	1097.58694	-0.79509	-0.00043714	0.69321	0.00038113	-0.10187	-5.6009E-05	549.8009650536604	36.529	0.55905	36.529	36.236	36.795	0					18	10	3	0	0	0	0.77834	1	12122	12122		2.0598	0	1	4896500	+		62591	27583	45691	46047	60943	60943					0.042054318516193234
YANSKAVTL	9	Unmodified	_YANSKAVTL_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	A375_MHC_IP_R1	1	483.6521301269531	2	483.766374	965.518196	-0.37536	-0.00018159	-0.30985	-0.00014989	-0.68521	-0.00033148	483.7662253114683	32.047	0.51379	32.047	31.819	32.333	0					20	9	3	0	0	0	0.0090499	1	10330	10330		100.09	32.747	1	4936200			62592	6778	45692	46048	60944	60944					0.03405767551907957
YANSKAVTL	9	Unmodified	_YANSKAVTL_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-SECPEP	A375_MHC_IP_R2	2	484.166259765625	2	483.766374	965.518196	-0.6176	-0.00029877	-0.12674	-6.1311E-05	-0.74434	-0.00036009	483.7662830201281	31.35	0.46087	32.068	31.821	32.282	0.71857					14	8	2	0	0	0	0.01147	1	11078	11078		121.53	43.55	1	4414400			62593	6778	45692	46048	60945	60945					0.03405767551907957
YANVKQGFY	9	Unmodified	_YANVKQGFY_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MULTI-SECPEP	A375_MHC_IP_R2	2	545.67138671875	2	545.271824	1088.5291	-0.71718	-0.00039106	-1.632	-0.00088989	-2.3492	-0.0012809	545.2713028482038	69.59	0.61156	70.325	70.081	70.693	0.73421					21	11	3	0	0	0	0.55359	1	26409	26409		21.747	1.3321	1	2479100			62594	4941	45693	46049	60946	60946					-0.011628300738038888
YANYFQTLI	9	Unmodified	_YANYFQTLI_					0	0	0		nc|ENSG00000006740|Q17R89-2|ARHGAP44;nc|ENSG00000006740|Q17R89-3|ARHGAP44;ENSG00000006740|ENST00000379672|ARHGAP44	nc|ENSG00000006740|Q17R89-2|ARHGAP44	nc|ENSG00000006740|Q17R89-2|ARHGAP44	MSMS	A375_MHC_IP_R2	2	566.7276611328125	2	566.787307	1131.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.992	1	78.735	78.235	79.235	0.74293								0	0	0	0.15486	1	29618	29618		13.508	0	1				62595	928	45694	46050	60947	60947					-0.00045676759555135504
YANYYTREV	9	Unmodified	_YANYYTREV_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	A375_MHC_IP_R1	1	590.177490234375	2	589.77747	1177.54039	0.026153	1.5424E-05	0.055767	3.289E-05	0.081919	4.8314E-05	589.777409791455	38.855	1.0662	38.855	38.526	39.592	0					40	20	5	0	0	0	0.00052266	2	13159	13159;13519		201.57	153.82	1	131460000			62596	3317	45695	46051	60948;60949	60948					-0.041280527703293046
YANYYTREV	9	Unmodified	_YANYYTREV_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	A375_MHC_IP_R2	2	590.1770629882812	2	589.77747	1177.54039	-0.84469	-0.00049818	0.41401	0.00024417	-0.43069	-0.00025401	589.7776185504689	38.122	0.71553	38.897	38.585	39.3	0.77451					35	13	5	0	0	0	0.00052266	1	13953	13953		201.57	149.3	1	112510000			62597	3317	45695	46051	60950	60950					-0.041280527703293046
YAPRDVRV	8	Unmodified	_YAPRDVRV_					0	0	0		nc|ENSG00000012124|P20273-5|CD22;nc|ENSG00000012124|P20273-4|CD22;nc|ENSG00000012124|P20273-3|CD22;ENSG00000012124|ENST00000085219|CD22;nc|ENSG00000012124|P20273-2|CD22;ENST00000602123.1_1_19:35832028-35832514:+|nuORF	nc|ENSG00000012124|P20273-5|CD22	nc|ENSG00000012124|P20273-5|CD22	MULTI-MSMS	A375_MHC_IP_R1	1	488.1873779296875	2	488.272158	974.529764	-0.33532	-0.00016373	-0.58816	-0.00028718	-0.92348	-0.00045091	488.2714537401465	58.387	0.30479	58.387	58.278	58.582	0					8	5	2	0	0	0	0.76654	1	20999	20999		15.847	5.0233	1	652390			62598	1007	45696	46052	60951	60951					0.04148009365906091
YAPRVREYFPY	11	Unmodified	_YAPRVREYFPY_					0	0	0			REV__RBM15|p.L561*|1|0.15|ENSG00000162775|chr1:110341085-110341085|T/-|frameshift_variant	REV__RBM15|p.L561*|1|0.15|ENSG00000162775|chr1:110341085-110341085|T/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	487.4794616699219	3	487.582221	1459.72483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.715	1	43.715	43.215	44.215	0								0	0	0	0.16305	1	15215	15215		2.8433	0.21205	1		+		62599	20308	45697	46053	60952	60952					0.013361353802338272
YAPVFPPQM	9	Unmodified	_YAPVFPPQM_					0	0	0			REV__ENSG00000105245|ENST00000252891|NUMBL	REV__ENSG00000105245|ENST00000252891|NUMBL	MULTI-MSMS	A375_MHC_IP_R2	2	525.6571655273438	2	525.259871	1048.50519	-0.51165	-0.00026875	1.4213	0.00074653	0.9096	0.00047778	525.2609389884393	75.336	1.2686	76.077	75.674	76.943	0.74052					45	24	4	0	0	0	0.1978	1	28787	28787		38.151	9.6643	1	10776000	+		62600	17364	45698	46054	60953	60953					-0.01712386831832191
YAQQLRKLR	9	Unmodified	_YAQQLRKLR_					0	0	0		ENSG00000138095|ENST00000260665|LRPPRC;ENST00000419884.5_1_2:44115741-44117437:-|nuORF;ENST00000463456.5_1_2:44115741-44128754:-|nuORF	ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	MULTI-SECPEP	A375_MHC_IP_R1	1	391.8419494628906	3	392.571768	1174.69348	-0.078539	-3.0832E-05	0.47036	0.00018465	0.39182	0.00015382	392.5719390594689	19.293	0.28278	19.293	19.238	19.521	0					8	5	2	0	0	0	0.73008	1	4790	4790		12.241	0	1	20620000			62601	4957	45699	46055	60954	60954					0.11311607136781276
YAREQHAPV	9	Unmodified	_YAREQHAPV_					0	0	0			REV__ENSG00000004961|ENST00000380762|HCCS	REV__ENSG00000004961|ENST00000380762|HCCS	MULTI-MSMS	A375_MHC_IP_R1	1	357.612060546875	3	357.51744	1069.53049	-0.090981	-3.2527E-05	1.285	0.00045941	1.194	0.00042688	357.51788414133915	39.991	0.40899	39.991	39.845	40.254	0					10	7	2	0	0	0	0.53367	1	13662	13662		12.873	3.3286	1	1339000	+		62602	16106	45700	46056	60955	60955					-0.0014919598504548048
YAREQHAPV	9	Unmodified	_YAREQHAPV_					0	0	0			REV__ENSG00000004961|ENST00000380762|HCCS	REV__ENSG00000004961|ENST00000380762|HCCS	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	357.51744	1069.53049	-0.090981	-3.2527E-05	1.285	0.00045941	1.194	0.00042688	357.51788414133915	39.991	0.40899	39.991	39.845	40.254	0	0	0	NaN	12.873	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1339000	+		62603	16106	45700	46056							-0.0014919598504548048
YARGCMNCCY	10	Unmodified	_YARGCMNCCY_					0	0	0			REV__ZNF362|p.S374N|1|0.26|ENSG00000160094|chr1:33295280-33295280|G/A|missense_variant	REV__ZNF362|p.S374N|1|0.26|ENSG00000160094|chr1:33295280-33295280|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	592.1912841796875	2	592.211214	1182.40788	-0.29296	-0.00017349	1.1829	0.00070053	0.88994	0.00052703	592.2119471891896	73.046	0.76143	73.046	72.625	73.386	0					30	14	3	0	0	0	0.72378	1	26439	26439		1.6526	0.17072	1	2893200	+		62604	29037	45701	46057	60956	60956					-0.1760318336630462
YARLENGRF	9	Unmodified	_YARLENGRF_					0	0	0		ENSG00000007866|ENST00000338863|TEAD3	ENSG00000007866|ENST00000338863|TEAD3	ENSG00000007866|ENST00000338863|TEAD3	MULTI-SECPEP	A375_MHC_IP_R2	2	376.29229736328125	3	375.86484	1124.57269	0.1999	7.5137E-05	-0.45378	-0.00017056	-0.25388	-9.5424E-05	375.8647470351256	45.207	0.35503	45.972	45.846	46.201	0.76519					11	6	2	0	0	0	0.74169	1	16930	16930		11.495	3.5493	1	2252900			62605	945	45702	46058	60957	60957					0.01538779423322012
YARLHPRAV	9	Unmodified	_YARLHPRAV_					0	0	0		ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	A375_MHC_IP_R1	1	361.9564208984375	3	361.545442	1081.6145	0.09036	3.2669E-05	-0.15168	-5.4841E-05	-0.061325	-2.2172E-05	361.54537459416264	19.759	0.96539	19.759	19.368	20.334	0					78	18	9	0	0	0	0.015356	1	4982	4982		89.401	49.451	1	62707000			62606	9678	45703	46059	60958	60958					0.07695379902497734
YARLHPRAV	9	Unmodified	_YARLHPRAV_					0	0	0		ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	A375_MHC_IP_R1	1	361.9454040527344	3	361.545442	1081.6145	0.48859	0.00017665	-0.57381	-0.00020746	-0.085222	-3.0811E-05	361.54519600019813	22.068	0.91445	22.068	21.505	22.419	0					23	17	2	0	0	0	0.073067	2	5878	5878;5966		55.503	33.913	1	4767000			62607	9678	45703	46059	60959;60960	60959					0.07695379902497734
YARLHPRAV	9	Unmodified	_YARLHPRAV_					0	0	0		ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	A375_MHC_IP_R2	2	361.945068359375	3	361.545442	1081.6145	-0.45315	-0.00016383	-0.45988	-0.00016627	-0.91303	-0.0003301	361.54526045385313	18.905	0.38097	19.508	19.452	19.833	0.60308					13	7	2	0	0	0	0.073067	1	5711	5711		55.503	33.913	1	202320000			62608	9678	45703	46059	60961	60961					0.07695379902497734
YARLHPRAV	9	Unmodified	_YARLHPRAV_					0	0	0		ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	A375_MHC_IP_R2	2	361.9450378417969	3	361.545442	1081.6145	-0.5258	-0.0001901	-0.4094	-0.00014802	-0.9352	-0.00033812	361.5452780738946	21.487	0.50848	22.106	21.878	22.387	0.61932					14	9	2	0	0	0	0.11715	1	6779	6779		47.594	26.004	1	5502000			62609	9678	45703	46059	60962	60962					0.07695379902497734
YARLRGIP	8	Unmodified	_YARLRGIP_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	MSMS	A375_MHC_IP_R1	1	473.5067138671875	2	473.285069	944.555585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.15	1	79.15	78.65	79.65	0								0	0	0	0.16876	1	28889	28889		13.508	0	1				62610	7244	45704	46060	60963	60963					0.08108903608183482
YARSPIRTY	9	Unmodified	_YARSPIRTY_					0	0	0		TBX20|p.S308F|1|0.54|ENSG00000164532|chr7:35204550-35204550|G/A|missense_variant;TBX20|p.G319E|1|0.25|ENSG00000164532|chr7:35204517-35204517|C/T|missense_variant;TBX20|p.G318R|1|0.23|ENSG00000164532|chr7:35204521-35204521|C/T|missense_variant;ENSG00000164532|ENST00000408931|TBX20	TBX20|p.S308F|1|0.54|ENSG00000164532|chr7:35204550-35204550|G/A|missense_variant	TBX20|p.S308F|1|0.54|ENSG00000164532|chr7:35204550-35204550|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	375.9292907714844	3	376.204974	1125.59309	-0.013536	-5.0925E-06	4.0744	0.0015328	4.0608	0.0015277	376.20615999787765	18.871	0.1946	19.474	19.438	19.633	0.60308					5	4	2	0	0	0	0.76187	1	5743	5743		4.5289	2.0304	1	5577500			62611	6847	45705	46061	60964	60964					0.03531950083151969
YARWREAQAPY	11	Unmodified	_YARWREAQAPY_					0	0	0		ENSG00000165905|ENST00000401752|LARGE2;ENST00000528236.5_1_11:45949456-45950393:+|nuORF;ENST00000530437.5_1_11:45947935-45950393:+|nuORF	ENSG00000165905|ENST00000401752|LARGE2	ENSG00000165905|ENST00000401752|LARGE2	MULTI-SECPEP	A375_MHC_IP_R1	1	706.4878540039062	2	705.849293	1409.68403	-0.99168	-0.00069998	-2.3741	-0.0016757	-3.3657	-0.0023757	705.846905226119	67.881	0.96293	67.881	67.297	68.26	0					40	18	4	0	0	0	0.99526	1	24469	24469		3.5965	2.1146	1	13181000			62612	7001	45706	46062	60965	60965					-0.004422059394073585
YARYHQAFA	9	Unmodified	_YARYHQAFA_					0	0	0		ENST00000468063.1_1_2:95537336-95538738:+|nuORF;ENSG00000163060|ENST00000295201|TEKT4	ENST00000468063.1_1_2:95537336-95538738:+|nuORF	ENST00000468063.1_1_2:95537336-95538738:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	375.9292907714844	3	376.185802	1125.53558	-0.01813	-6.8203E-06	-0.54835	-0.00020628	-0.56648	-0.0002131	376.1854298005635	19.005	0.28076	19.608	19.452	19.733	0.60308					6	5	2	0	0	0	0.78753	1	5743	5743		4.897	1.3005	1	1512700			62613	6627	45707	46063	60966	60966					-0.022168921224192673
YASDVQLIL	9	Unmodified	_YASDVQLIL_					0	0	0		nc|ENSG00000123094|Q8NHQ8-2|RASSF8;ENSG00000123094|ENST00000689635|RASSF8	nc|ENSG00000123094|Q8NHQ8-2|RASSF8	nc|ENSG00000123094|Q8NHQ8-2|RASSF8	MULTI-MSMS	A375_MHC_IP_R1	1	511.68133544921875	2	511.281857	1020.54916	0.041301	2.1116E-05	-0.59199	-0.00030267	-0.55069	-0.00028156	511.2815400522255	114.31	1.4728	114.31	113.8	115.27	0					76	28	5	0	0	0	0.0097736	1	41826	41826		112.59	30.98	1	55728000			62614	3822	45708	46064	60967	60967					0.03970920866152028
YASDVQLIL	9	Unmodified	_YASDVQLIL_					0	0	0		nc|ENSG00000123094|Q8NHQ8-2|RASSF8;ENSG00000123094|ENST00000689635|RASSF8	nc|ENSG00000123094|Q8NHQ8-2|RASSF8	nc|ENSG00000123094|Q8NHQ8-2|RASSF8	MULTI-MSMS	A375_MHC_IP_R2	2	511.6815490722656	2	511.281857	1020.54916	-0.53194	-0.00027197	0.1316	6.7286E-05	-0.40034	-0.00020469	511.28194654106943	113.39	1.3139	114.1	113.72	115.03	0.70985					67	25	4	0	0	0	0.0097736	2	42677	42677;42900		112.59	41.46	1	59027000			62615	3822	45708	46064	60968;60969	60968					0.03970920866152028
YASDVQLIL	9	Unmodified	_YASDVQLIL_					0	0	0		nc|ENSG00000123094|Q8NHQ8-2|RASSF8;ENSG00000123094|ENST00000689635|RASSF8	nc|ENSG00000123094|Q8NHQ8-2|RASSF8	nc|ENSG00000123094|Q8NHQ8-2|RASSF8	MULTI-SECPEP	A375_MHC_IP_R2	2	1022.2844848632812	1	1021.55644	1020.54916	0.2507	0.0002561	0.41714	0.00042613	0.66784	0.00068223	1021.5565889856707	113.42	0.76269	114.13	113.72	114.48	0.70985					41	14	4	0	0	0	0.021422	1	42790	42790		85.272	29.095	1	36484000			62616	3822	45708	46064	60970	60970					0.03970920866152028
YASDVQLIL	9	Unmodified	_YASDVQLIL_					0	0	0		nc|ENSG00000123094|Q8NHQ8-2|RASSF8;ENSG00000123094|ENST00000689635|RASSF8	nc|ENSG00000123094|Q8NHQ8-2|RASSF8	nc|ENSG00000123094|Q8NHQ8-2|RASSF8	MULTI-MATCH	A375_MHC_IP_R1	1		1	1021.55644	1020.54916	0.68352	0.00069825	-0.14102	-0.00014406	0.5425	0.00055419	1021.5561827934079	114.33	0.86722	114.33	113.9	114.77	0	0.10206	-0.00044877	NaN	85.272	42	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96931000			62617	3822	45708	46064							0.03970920866152028
YASENVNKL	9	Unmodified	_YASENVNKL_					0	0	0		nc|ENSG00000138069|P62820-2|RAB1A;ENSG00000174903|ENST00000311481|RAB1B;ENSG00000138069|ENST00000409784|RAB1A	nc|ENSG00000138069|P62820-2|RAB1A	nc|ENSG00000138069|P62820-2|RAB1A	MULTI-MSMS	A375_MHC_IP_R1	1	519.6663818359375	2	519.266739	1036.51892	-0.55428	-0.00028782	0.99376	0.00051603	0.43948	0.00022821	519.2674986567048	28.307	0.70778	28.307	28.037	28.745	0					29	13	3	0	0	0	0.0028773	1	8700	8700		193.29	108.02	1	16168000			62618	4949	45709	46065	60971	60971					0.002125622009543804
YASENVNKL	9	Unmodified	_YASENVNKL_					0	0	0		nc|ENSG00000138069|P62820-2|RAB1A;ENSG00000174903|ENST00000311481|RAB1B;ENSG00000138069|ENST00000409784|RAB1A	nc|ENSG00000138069|P62820-2|RAB1A	nc|ENSG00000138069|P62820-2|RAB1A	MULTI-SECPEP	A375_MHC_IP_R2	2	519.6663208007812	2	519.266739	1036.51892	-0.6784	-0.00035227	1.2074	0.00062694	0.52896	0.00027467	519.2675358184468	27.647	0.70908	28.326	28.149	28.858	0.67857					29	13	3	0	0	0	1.9127E-08	1	9460	9460		216.57	120.28	1	16074000			62619	4949	45709	46065	60972	60972					0.002125622009543804
YASFGGHHAL	10	Unmodified	_YASFGGHHAL_					0	0	0			REV__ENST00000409189.7_1_2:228681802-228681934:+|nuORF	REV__ENST00000409189.7_1_2:228681802-228681934:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	530.654541015625	2	530.253966	1058.49338	-0.071514	-3.7921E-05	1.987	0.0010536	1.9155	0.0010157	530.2549944425791	114.24	0.50867	114.24	114.06	114.57	0					14	9	2	0	0	0	0.14594	1	41910	41910		54.774	8.7526	1	3876900	+		62620	24464	45710	46066	60973	60973					-0.03352867530816184
YASGAAAY	8	Unmodified	_YASGAAAY_					0	0	0		ENSG00000090530|ENST00000319332|P3H2	ENSG00000090530|ENST00000319332|P3H2	ENSG00000090530|ENST00000319332|P3H2	MULTI-SECPEP	A375_MHC_IP_R2	2	773.507568359375	1	773.346446	772.339169	-1.1766	-0.00090992	1.6261	0.0012576	0.44953	0.00034764	773.3473024609624	35.242	0.45473	36.005	35.778	36.233	0.76338					11	8	2	0	0	0	0.94479	1	12812	12812		13.508	0	1	1592700			62621	1954	45711	46067	60974	60974					-0.05610697016197719
YASGVERTI	9	Unmodified	_YASGVERTI_					0	0	0		ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B;ENST00000593411.1_1_19:17213013-17214246:+|nuORF	ENSG00000099331|ENST00000682292|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	MULTI-SECPEP	A375_MHC_IP_R1	1	498.6609802246094	2	498.261456	994.50836	-0.41765	-0.0002081	-0.56841	-0.00028321	-0.98605	-0.00049131	498.261564884583	31.287	0.71055	31.287	31.059	31.769	0					29	13	3	0	0	0	0.48845	1	10017	10017		37.075	10.191	1	5424200			62622	2072	45712	46068	60975	60975					0.01088579546535584
YASGVERTI	9	Unmodified	_YASGVERTI_					0	0	0		ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B;ENST00000593411.1_1_19:17213013-17214246:+|nuORF	ENSG00000099331|ENST00000682292|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	MULTI-SECPEP	A375_MHC_IP_R2	2	498.66094970703125	2	498.261456	994.50836	-0.54131	-0.00026971	-1.1626	-0.00057926	-1.7039	-0.00084898	498.2612911778726	30.628	0.85932	31.347	31.064	31.923	0.71857					26	16	3	0	0	0	0.57304	1	10781	10781		23.79	6.6769	1	5407400			62623	2072	45712	46068	60976	60976					0.01088579546535584
YASLEKSTLL	10	Unmodified	_YASLEKSTLL_					0	0	0			REV__ABCB5|p.S230L|1|0.25|ENSG00000004846|chr7:20645766-20645766|C/T|missense_variant	REV__ABCB5|p.S230L|1|0.25|ENSG00000004846|chr7:20645766-20645766|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	563.2136840820312	2	562.813522	1123.61249	-0.46504	-0.00026173	0.045652	2.5693E-05	-0.41939	-0.00023604	562.8135130994579	78.871	0.81215	79.616	79.387	80.199	0.74474					31	15	3	0	0	0	0.56504	1	29939	29939		34.402	11.665	1	7233800	+		62624	15286	45713	46069	60977	60977					0.055628615833938966
YASLHGRIY	9	Unmodified	_YASLHGRIY_					0	0	0		nc|ENSG00000050405|Q9UHB6-3|LIMA1;LIMA1|p.A544Dfs*11|1|0.27|ENSG00000050405|chr12:50177700-50177713|CCCTTCCTCCAAGG/-|frameshift_variant;nc|ENSG00000050405|Q9UHB6-2|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1	nc|ENSG00000050405|Q9UHB6-3|LIMA1	nc|ENSG00000050405|Q9UHB6-3|LIMA1	MULTI-SECPEP	A375_MHC_IP_R1	1	360.26092529296875	3	360.525936	1078.55598	-0.058307	-2.1021E-05	0.024254	8.7442E-06	-0.034053	-1.2277E-05	360.52593412187224	32.449	0.61163	32.449	31.973	32.585	0					15	6	3	0	0	0	0.5212	1	10482	10482		24.882	11.267	1	4483100			62625	1230	45714	46070	60978	60978					0.019842785373839433
YASLHGRIY	9	Unmodified	_YASLHGRIY_					0	0	0		nc|ENSG00000050405|Q9UHB6-3|LIMA1;LIMA1|p.A544Dfs*11|1|0.27|ENSG00000050405|chr12:50177700-50177713|CCCTTCCTCCAAGG/-|frameshift_variant;nc|ENSG00000050405|Q9UHB6-2|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1	nc|ENSG00000050405|Q9UHB6-3|LIMA1	nc|ENSG00000050405|Q9UHB6-3|LIMA1	MULTI-SECPEP	A375_MHC_IP_R1	1	540.6591186523438	2	540.285266	1078.55598	-0.83511	-0.0004512	0.048707	2.6316E-05	-0.7864	-0.00042488	540.2848276475937	32.436	0.2529	32.436	32.282	32.535	0					8	4	2	0	0	0	0.38578	1	10488	10488		41.84	11.203	1	2661900			62626	1230	45714	46070	60979	60979					0.019842785373839433
YASLHGRIY	9	Unmodified	_YASLHGRIY_					0	0	0		nc|ENSG00000050405|Q9UHB6-3|LIMA1;LIMA1|p.A544Dfs*11|1|0.27|ENSG00000050405|chr12:50177700-50177713|CCCTTCCTCCAAGG/-|frameshift_variant;nc|ENSG00000050405|Q9UHB6-2|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1	nc|ENSG00000050405|Q9UHB6-3|LIMA1	nc|ENSG00000050405|Q9UHB6-3|LIMA1	MULTI-SECPEP	A375_MHC_IP_R2	2	360.92572021484375	3	360.525936	1078.55598	-0.21746	-7.8401E-05	0.10951	3.9479E-05	-0.10796	-3.8921E-05	360.5259469060654	31.61	0.71463	32.347	31.89	32.605	0.73692					12	7	2	0	0	0	0.41434	1	11203	11203		24.882	7.4389	1	4294200			62627	1230	45714	46070	60980	60980					0.019842785373839433
YASLHGRIY	9	Unmodified	_YASLHGRIY_					0	0	0		nc|ENSG00000050405|Q9UHB6-3|LIMA1;LIMA1|p.A544Dfs*11|1|0.27|ENSG00000050405|chr12:50177700-50177713|CCCTTCCTCCAAGG/-|frameshift_variant;nc|ENSG00000050405|Q9UHB6-2|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1	nc|ENSG00000050405|Q9UHB6-3|LIMA1	nc|ENSG00000050405|Q9UHB6-3|LIMA1	MULTI-SECPEP	A375_MHC_IP_R2	2	540.6373291015625	2	540.285266	1078.55598	-0.8663	-0.00046805	0.80825	0.00043669	-0.058046	-3.1362E-05	540.285158871642	31.639	0.4566	32.375	32.198	32.654	0.73691					13	8	2	0	0	0	0.5212	1	11195	11195		32.786	5.1569	1	3417600			62628	1230	45714	46070	60981	60981					0.019842785373839433
YASNHPIM	8	Oxidation (M)	_YASNHPIM(Oxidation (M))_		YASNHPIM(1)		YASNHPIM(78)	0	0	1		nc|ENSG00000108582|O75976-2|CPD;ENSG00000108582|ENST00000225719|CPD;CPD|p.N755Lfs*3|1|0.17|ENSG00000108582|chr17:30442339-30442340|AA/-|frameshift_variant	nc|ENSG00000108582|O75976-2|CPD	nc|ENSG00000108582|O75976-2|CPD	MULTI-MSMS	A375_MHC_IP_R1	1	475.1156921386719	2	474.715827	947.417102	-0.24412	-0.00011589	2.1955	0.0010422	1.9514	0.00092636	474.71577754574224	21.491	0.66125	21.491	21.25	21.911	0					20	12	3	0	0	0	0.16582	1	5670	5670		78.149	38.192	1	1944600			62629	2817	45715	46071	60982	60982		126			-0.05871007422445018
YASPHLVLGY	10	Unmodified	_YASPHLVLGY_					0	0	0			REV__nc|ENSG00000102001|O60840-5|CACNA1F	REV__nc|ENSG00000102001|O60840-5|CACNA1F	MULTI-SECPEP	A375_MHC_IP_R2	2	559.69384765625	2	560.295299	1118.57605	-0.77579	-0.00043467	-1.7888	-0.0010023	-2.5646	-0.0014369	560.2933744160825	55.156	0.45767	55.907	55.626	56.084	0.75075					11	8	2	0	0	0	0.90853	1	20868	20868		10.824	0	1	1464100	+		62630	17199	45716	46072	60983	60983					0.02150029477343196
YASTGREF	8	Unmodified	_YASTGREF_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	A375_MHC_IP_R1	1	466.1191101074219	2	465.719424	929.424296	-0.53575	-0.00024951	-0.085713	-3.9918E-05	-0.62146	-0.00028943	465.7193315400744	26.043	0.55724	26.043	25.866	26.423	0					25	10	3	0	0	0	0.16721	1	7702	7702		75.761	11.525	1	37433000			62631	4338	45717	46073	60984	60984					-0.043239515503842085
YASTGREF	8	Unmodified	_YASTGREF_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	A375_MHC_IP_R2	2	466.1189270019531	2	465.719424	929.424296	-1.1009	-0.00051269	0.47843	0.00022281	-0.62243	-0.00028988	465.71953691403496	25.509	0.45629	26.152	25.976	26.433	0.64368					19	8	3	0	0	0	0.25593	1	8534	8534		62.573	7.7991	1	22223000			62632	4338	45717	46073	60985	60985					-0.043239515503842085
YATGLLKQL	9	Unmodified	_YATGLLKQL_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	MULTI-SECPEP	A375_MHC_IP_R1	1	504.1995849609375	2	503.800217	1005.58588	-0.17781	-8.958E-05	-0.45391	-0.00022868	-0.63172	-0.00031826	503.7998596464927	71.594	0.40086	71.594	71.364	71.765	0					18	7	3	0	0	0	0.05021	1	26061	26061		69.105	29.148	1	12629000			62633	4288	45718	46074	60986	60986					0.08331217482702868
YATKERIEY	9	Unmodified	_YATKERIEY_					0	0	0		nc|ENSG00000188092|B7ZAQ6-2|GPR89A;ENST00000460277.5_1_1:145765021-145811987:-|nuORF;nc|ENSG00000188092|B7ZAQ6-3|GPR89A;ENSG00000188092|ENST00000314163|GPR89B;ENSG00000117262|ENST00000313835|GPR89A	nc|ENSG00000188092|B7ZAQ6-2|GPR89A	nc|ENSG00000188092|B7ZAQ6-2|GPR89A	MULTI-SECPEP	A375_MHC_IP_R2	2	391.93646240234375	3	391.536389	1171.58734	-0.55292	-0.00021649	0.36861	0.00014433	-0.1843	-7.2161E-05	391.870857044247	24.796	0.65933	25.439	25.009	25.668	0.64368					30	12	3	0	0	0	0.48845	1	8090	8090		30.703	6.9137	1	21867000			62634	3468	45719	46075	60987	60987					0.008408067807977204
YATKHLRVL	9	Unmodified	_YATKHLRVL_					0	0	0		ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR;ENST00000503698.1_1_5:38954866-38959404:-|nuORF	ENSG00000164327|ENST00000357387|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	MULTI-SECPEP	A375_MHC_IP_R1	1	367.9573974609375	3	367.557348	1099.65021	0.16031	5.8925E-05	0.0014202	5.2202E-07	0.16173	5.9447E-05	367.55729804054903	27.241	0.55603	27.241	27.078	27.634	0					19	10	3	0	0	0	0.35487	1	8256	8256		27.223	20.593	1	6724100			62635	6825	45720	46076	60988	60988					0.10437417359503343
YATKHLRVL	9	Unmodified	_YATKHLRVL_					0	0	0		ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR;ENST00000503698.1_1_5:38954866-38959404:-|nuORF	ENSG00000164327|ENST00000357387|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	MULTI-MSMS	A375_MHC_IP_R2	2	367.9573974609375	3	367.557348	1099.65021	-0.22281	-8.1894E-05	0.22693	8.341E-05	0.004124	1.5158E-06	367.55740229837164	26.327	0.60901	26.987	26.805	27.414	0.65992					20	11	3	0	0	0	0.3489	1	8899	8899		27.223	17.679	1	4981200			62636	6825	45720	46076	60989	60989					0.10437417359503343
YATPIIMDM	9	2 Oxidation (M)	_YATPIIM(Oxidation (M))DM(Oxidation (M))_		YATPIIM(1)DM(1)		YATPIIM(100)DM(100)	0	0	2		ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	MULTI-MSMS	A375_MHC_IP_R1	1	543.68408203125	2	543.745936	1085.47732	-0.56292	-0.00030608	-0.17402	-9.4625E-05	-0.73694	-0.00040071	543.7456810191525	63.778	0.61282	63.778	63.477	64.09	0					21	11	2	0	0	0	0.0090669	2	23044	23044;23065		100.37	82.237	1	2848200			62637	1280	45721	46077	60990;60991	60990		31;32			-0.06200077874223098
YATPIIMDM	9	2 Oxidation (M)	_YATPIIM(Oxidation (M))DM(Oxidation (M))_		YATPIIM(1)DM(1)		YATPIIM(82)DM(82)	0	0	2		ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	MULTI-MSMS	A375_MHC_IP_R2	2	544.1455688476562	2	543.745936	1085.47732	-0.77032	-0.00041886	-0.21766	-0.00011835	-0.98798	-0.00053721	543.7458060097092	63.12	0.5587	63.863	63.634	64.193	0.74263					19	10	2	0	0	0	0.022213	2	23953	23917;23953		81.613	69.082	1	2383600			62638	1280	45721	46077	60992;60993	60993		31;32			-0.06200077874223098
YATQLQKTY	9	Unmodified	_YATQLQKTY_					0	0	0		ENSG00000126561|ENST00000590949|STAT5A	ENSG00000126561|ENST00000590949|STAT5A	ENSG00000126561|ENST00000590949|STAT5A	MULTI-SECPEP	A375_MHC_IP_R1	1	558.6902465820312	2	558.290214	1114.56587	-0.49331	-0.00027541	-0.1755	-9.7981E-05	-0.66881	-0.00037339	558.2901475929253	31.772	0.4079	31.772	31.616	32.024	0					14	7	3	0	0	0	0.010793	1	10224	10224		179.28	124.05	1	4316100			62639	4049	45722	46078	60994	60994					0.013174217521054743
YATQLQKTY	9	Unmodified	_YATQLQKTY_					0	0	0		ENSG00000126561|ENST00000590949|STAT5A	ENSG00000126561|ENST00000590949|STAT5A	ENSG00000126561|ENST00000590949|STAT5A	MULTI-SECPEP	A375_MHC_IP_R2	2	558.6900024414062	2	558.290214	1114.56587	-0.75931	-0.00042391	0.16089	8.9824E-05	-0.59841	-0.00033409	558.2903305972466	31.099	0.35669	31.817	31.669	32.026	0.71857					12	6	2	0	0	0	0.010822	1	10980	10980		176.43	123.02	1	3881000			62640	4049	45722	46078	60995	60995					0.013174217521054743
YATSNKKKW	9	Unmodified	_YATSNKKKW_					0	0	0			REV__ENST00000497447.5_1_3:119198882-119205848:+|nuORF	REV__ENST00000497447.5_1_3:119198882-119205848:+|nuORF	MSMS	A375_MHC_IP_R1	1	563.3159790039062	2	563.306198	1124.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.471	1	88.471	87.971	88.971	0								0	0	0	0.15486	1	32480	32480		5.2307	1.2863	1		+		62641	20358	45723	46079	60996	60996					0.0405283422589946
YATTVIPRVY	10	Unmodified	_YATTVIPRVY_					0	0	0		ENST00000508561.5_1_4:56283240-56284276:+|nuORF;nc|ENSG00000134851|Q9HC07-2|TMEM165;ENST00000508404.5_1_4:56269487-56291616:+|nuORF;ENSG00000134851|ENST00000381334|TMEM165	ENST00000508561.5_1_4:56283240-56284276:+|nuORF	ENST00000508561.5_1_4:56283240-56284276:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	592.2291259765625	2	591.829506	1181.64446	-0.11889	-7.0364E-05	0.38183	0.00022598	0.26294	0.00015561	591.8296375930527	71.991	0.75674	71.991	71.615	72.372	0					35	14	4	0	0	0	0.22006	1	26131	26131		93.166	54.99	1	16566000			62642	4615	45724	46080	60997	60997					0.06090274057191891
YATTVIPRVY	10	Unmodified	_YATTVIPRVY_					0	0	0		ENST00000508561.5_1_4:56283240-56284276:+|nuORF;nc|ENSG00000134851|Q9HC07-2|TMEM165;ENST00000508404.5_1_4:56269487-56291616:+|nuORF;ENSG00000134851|ENST00000381334|TMEM165	ENST00000508561.5_1_4:56283240-56284276:+|nuORF	ENST00000508561.5_1_4:56283240-56284276:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	592.2291259765625	2	591.829506	1181.64446	-0.76279	-0.00045144	0.14949	8.847E-05	-0.61331	-0.00036297	591.8295927199746	71.234	0.60802	71.968	71.656	72.264	0.73421					28	11	3	0	0	0	0.017076	1	26980	26980		128.93	88.983	1	16992000			62643	4615	45724	46080	60998	60998					0.06090274057191891
YATVHQSY	8	Unmodified	_YATVHQSY_					0	0	0		nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MULTI-MSMS	A375_MHC_IP_R2	2	484.65423583984375	2	484.727249	967.439946	-0.93494	-0.00045319	0.43145	0.00020914	-0.50349	-0.00024406	484.72758794206345	23.052	0.35729	23.683	23.521	23.878	0.63014					8	6	2	0	0	0	0.17784	1	7359	7359		69.105	29.148	1	1556700			62644	7310	45725	46081	60999	60999					-0.04507665033338526
YATVHQSY	8	Unmodified	_YATVHQSY_					0	0	0		nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MULTI-MATCH	A375_MHC_IP_R1	1		2	484.727249	967.439946	-0.56264	-0.00027273	0.39488	0.00019141	-0.16776	-8.1318E-05	484.72741762798273	23.762	0.15226	23.762	23.635	23.787	0	0.039688	-5.7948E-06	NaN	69.105	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2057900			62645	7310	45725	46081							-0.04507665033338526
YATYPREL	8	Unmodified	_YATYPREL_					0	0	0		ENSG00000125485|ENST00000372159|DDX31;nc|ENSG00000125485|Q9H8H2|DDX31;nc|ENSG00000125485|Q9H8H2-2|DDX31	ENSG00000125485|ENST00000372159|DDX31	ENSG00000125485|ENST00000372159|DDX31	MULTI-SECPEP	A375_MHC_IP_R1	1	507.15838623046875	2	506.758549	1011.50255	-0.15777	-7.995E-05	-0.029024	-1.4708E-05	-0.18679	-9.4658E-05	506.7584819984713	43.069	0.91626	43.069	42.79	43.706	0					47	17	4	0	0	0	0.76996	1	14918	14918		43.858	3.901	1	57792000			62646	3969	45726	46082	61000	61000					-0.0027451896515913177
YATYPREL	8	Unmodified	_YATYPREL_					0	0	0		ENSG00000125485|ENST00000372159|DDX31;nc|ENSG00000125485|Q9H8H2|DDX31;nc|ENSG00000125485|Q9H8H2-2|DDX31	ENSG00000125485|ENST00000372159|DDX31	ENSG00000125485|ENST00000372159|DDX31	MULTI-SECPEP	A375_MHC_IP_R2	2	507.157958984375	2	506.758549	1011.50255	-0.67646	-0.0003428	-0.11658	-5.908E-05	-0.79305	-0.00040188	506.7584852694203	42.321	0.8663	43.094	42.757	43.623	0.7724					44	16	5	0	0	0	0.37815	1	15699	15699		71.922	24.174	1	57943000			62647	3969	45726	46082	61001	61001					-0.0027451896515913177
YAVDAYFREA	10	Unmodified	_YAVDAYFREA_					0	0	0		nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1	MULTI-SECPEP	A375_MHC_IP_R1	1	603.185302734375	2	602.785296	1203.55604	-0.17077	-0.00010294	-0.02927	-1.7643E-05	-0.20004	-0.00012058	602.7851952370926	70.315	0.40845	70.315	70.034	70.442	0					19	7	3	0	0	0	0.24526	1	25510	25510		67.081	28.905	1	6783100			62648	2352;6011	45727	46083	61002	61002					-0.0375976625327894
YAVDAYFREA	10	Unmodified	_YAVDAYFREA_					0	0	0		nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1	MULTI-SECPEP	A375_MHC_IP_R2	2	603.184814453125	2	602.785296	1203.55604	-0.38789	-0.00023382	-0.004954	-2.9862E-06	-0.39285	-0.0002368	602.7850596893418	69.723	0.35767	70.457	70.233	70.591	0.73421					16	6	3	0	0	0	0.24526	1	26408	26408		59.052	20.877	1	6493900			62649	2352;6011	45727	46083	61003	61003					-0.0375976625327894
YAVDFQRRY	9	Unmodified	_YAVDFQRRY_					0	0	0		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	A375_MHC_IP_R1	1	406.940185546875	3	406.540245	1216.59891	-0.29645	-0.00012052	0.35557	0.00014456	0.059128	2.4038E-05	406.5403491750361	40.235	0.66165	40.235	39.999	40.66	0					31	12	5	0	0	0	0.070818	1	13808	13808		51.415	20.712	1	19146000			62650	3223	45728	46084	61004	61004					-0.0007295140517271648
YAVDFQRRY	9	Unmodified	_YAVDFQRRY_					0	0	0		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	A375_MHC_IP_R1	1	609.706298828125	2	609.306729	1216.59891	-0.34637	-0.00021105	-0.21153	-0.00012889	-0.5579	-0.00033994	609.3065577416922	40.217	0.35645	40.217	40.05	40.406	0					16	6	3	0	0	0	0.27064	1	13835	13835		32.786	8.9959	1	4292800			62651	3223	45728	46084	61005	61005					-0.0007295140517271648
YAVDFQRRY	9	Unmodified	_YAVDFQRRY_					0	0	0		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	A375_MHC_IP_R2	2	406.9400329589844	3	406.540245	1216.59891	-0.022013	-8.9492E-06	-0.082445	-3.3517E-05	-0.10446	-4.2466E-05	406.54017686166645	39.568	0.60931	40.343	40.067	40.676	0.77451					31	11	4	0	0	0	0.070818	1	14599	14599		51.415	29.825	1	21369000			62652	3223	45728	46084	61006	61006					-0.0007295140517271648
YAVDFQRRY	9	Unmodified	_YAVDFQRRY_					0	0	0		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	A375_MHC_IP_R2	2	609.7063598632812	2	609.306729	1216.59891	-0.49319	-0.00030051	-0.25788	-0.00015713	-0.75107	-0.00045763	609.3065137995791	39.562	0.35572	40.336	40.169	40.524	0.77451					15	6	3	0	0	0	0.44024	1	14634	14634		22.736	4.5899	1	3789600			62653	3223	45728	46084	61007	61007					-0.0007295140517271648
YAVDRAITH	9	Unmodified	_YAVDRAITH_					0	0	0		ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000595164.5_1_19:39327364-39331218:-|nuORF;ENST00000597731.1_1_19:39327364-39331218:-|nuORF;ENST00000601664.1_1_19:39329532-39330816:-|nuORF;ENST00000595443.5_1_19:39327988-39329682:-|nuORF	ENSG00000104824|ENST00000221419|HNRNPL	ENSG00000104824|ENST00000221419|HNRNPL	MULTI-MSMS	A375_MHC_IP_R1	1	523.6741943359375	2	523.274898	1044.53524	-0.51132	-0.00026756	-0.39148	-0.00020485	-0.9028	-0.00047241	523.274775259492	25.327	0.55976	25.327	25.154	25.714	0					22	10	3	0	0	0	0.026372	1	7389	7389		78.06	6.1382	1	8592400			62654	2539	45729	46085	61008	61008					0.014756881576886371
YAVDRAITH	9	Unmodified	_YAVDRAITH_					0	0	0		ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000595164.5_1_19:39327364-39331218:-|nuORF;ENST00000597731.1_1_19:39327364-39331218:-|nuORF;ENST00000601664.1_1_19:39329532-39330816:-|nuORF;ENST00000595443.5_1_19:39327988-39329682:-|nuORF	ENSG00000104824|ENST00000221419|HNRNPL	ENSG00000104824|ENST00000221419|HNRNPL	MULTI-MSMS	A375_MHC_IP_R2	2	523.6746215820312	2	523.274898	1044.53524	-0.95096	-0.00049761	-0.62006	-0.00032446	-1.571	-0.00082207	523.2747022624246	24.756	0.5066	25.399	25.263	25.77	0.64368					23	9	3	0	0	0	0.0095341	1	8189	8189		96.936	34.363	1	6931400			62655	2539	45729	46085	61009	61009					0.014756881576886371
YAVQRLPEL	9	Unmodified	_YAVQRLPEL_					0	0	0		ENSG00000198889|ENST00000371126|DCAF12L1;ENSG00000198354|ENST00000360028|DCAF12L2	ENSG00000198889|ENST00000371126|DCAF12L1	ENSG00000198889|ENST00000371126|DCAF12L1	MULTI-SECPEP	A375_MHC_IP_R2	2	545.2086791992188	2	544.808574	1087.60259	-0.66985	-0.00036494	0.50903	0.00027733	-0.16082	-8.7614E-05	544.8086469969113	95.643	0.9165	96.394	95.939	96.855	0.75044					46	17	4	0	0	0	0.13064	1	36291	36291		56.177	10.477	1	7182100			62656	9257	45730	46086	61010	61010					0.06229718368649628
YAVQRNYGF	9	Unmodified	_YAVQRNYGF_					0	0	0		nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;ENST00000331103.5_1_22:38150943-38151269:+|nuORF;nc|ENSG00000100106|Q9H2D6-6|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-MSMS	A375_MHC_IP_R2	2	558.6658325195312	2	559.274898	1116.53524	-0.58234	-0.00032569	-0.55092	-0.00030812	-1.1333	-0.00063381	559.2743988932401	48.009	0.55253	48.77	48.532	49.084	0.76127					11	7	2	0	0	0	0.38603	1	18029	18029		25.399	6.1423	1	3114900			62657	2120	45731	46087	61011	61011					-0.018363118422939806
YAVRIFREY	9	Unmodified	_YAVRIFREY_					0	0	0		ENSG00000134504|ENST00000580059|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	MULTI-SECPEP	A375_MHC_IP_R2	2	406.6433410644531	3	406.220624	1215.64004	-0.2263	-9.1929E-05	-0.36214	-0.00014711	-0.58844	-0.00023904	406.5548717169526	56.125	0.25532	56.875	56.745	57	0.75014					6	4	2	0	0	0	0.77901	1	21166	21166		3.5871	1.5011	1	585250			62658	4581	45732	46088	61012	61012					0.04084809634264275
YAVVIAFI	8	Unmodified	_YAVVIAFI_					0	0	0			REV__ENSG00000173578|ENST00000309285|XCR1	REV__ENSG00000173578|ENST00000309285|XCR1	MSMS	A375_MHC_IP_R2	2	448.27716064453125	2	448.268022	894.521491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.607	1	26.267	25.767	26.767	0.65992								0	0	0	0.16876	1	8576	8576		2.8892	0	1		+		62659	21234	45733	46089	61013	61013					0.07001062396557245
YAVWQRKDI	9	Unmodified	_YAVWQRKDI_					0	0	0		ENSG00000183654|ENST00000332432|MARCHF11;nc|ENSG00000183654|A6NNE9-2|MARCHF11	ENSG00000183654|ENST00000332432|MARCHF11	ENSG00000183654|ENST00000332432|MARCHF11	MULTI-SECPEP	A375_MHC_IP_R1	1	393.28143310546875	3	393.548741	1177.62439	-0.10405	-4.095E-05	-0.20037	-7.8857E-05	-0.30443	-0.00011981	393.54889368069377	39.945	0.45716	39.945	39.694	40.151	0					14	8	3	0	0	0	0.75466	1	13730	13730		8.1555	1.1184	1	2189700			62660	8514	45734	46090	61014	61014					0.04268523117229961
YAVYNEDTF	9	Unmodified	_YAVYNEDTF_					0	0	0		ANKRD36|p.S145F|1|0.36|ENSG00000135976|chr2:97118465-97118465|C/T|missense_variant	ANKRD36|p.S145F|1|0.36|ENSG00000135976|chr2:97118465-97118465|C/T|missense_variant	ANKRD36|p.S145F|1|0.36|ENSG00000135976|chr2:97118465-97118465|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	562.6981201171875	2	561.242929	1120.47131	-0.38313	-0.00021503	0.10865	6.0981E-05	-0.27447	-0.00015405	561.2430009172964	97.393	1.5215	97.393	96.985	98.507	0					76	29	5	0	0	0	0.62719	1	35689	35689		13.508	3.434	1	14359000			62661	146	45735	46091	61015	61015					-0.08411136789914053
YAWRLYRIYKE	11	Unmodified	_YAWRLYRIYKE_					0	0	0		tr|U7SM12|U7SM12_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02012PE=4SV=1	tr|U7SM12|U7SM12_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02012PE=4SV=1	tr|U7SM12|U7SM12_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02012PE=4SV=1	MSMS	A375_MHC_IP_R1	1	780.865478515625	2	780.919718	1559.82488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.52	1	119.52	119.02	120.02	0								0	0	0	0.16302	1	44184	44184		2.9952	0.26005	1				62662	29516	45736	46092	61016	61016					0.06736372714021854
YAWSVVKDLSG	11	Unmodified	_YAWSVVKDLSG_					0	0	0			REV__CYP4B1|p.H75Y|1|0.2|ENSG00000142973|chr1:46810850-46810850|C/T|missense_variant	REV__CYP4B1|p.H75Y|1|0.2|ENSG00000142973|chr1:46810850-46810850|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	613.713134765625	2	612.816596	1223.61864	-0.34508	-0.00021147	-0.74114	-0.00045419	-1.0862	-0.00066566	612.8164844242948	57.746	0.86153	57.746	57.467	58.328	0					44	16	3	0	0	0	0.73016	1	20870	20870		15.248	15.248	1	23889000	+		62663	15956	45737	46093	61017	61017					0.015773798148984497
YAYDGKDYLAL	11	Unmodified	_YAYDGKDYLAL_					0	0	0		nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	MULTI-MSMS	A375_MHC_IP_R1	1	647.0398559570312	2	646.313886	1290.61322	-0.35811	-0.00023145	-0.22375	-0.00014461	-0.58186	-0.00037607	646.3137343577539	79.6	0.46125	79.6	79.367	79.828	0					14	8	2	0	0	0	0.35071	1	29075	29075		42.835	0	1	1909100			62664	9471	45738	46094	61018	61018					-0.020463437675516616
YAYDGKDYLAL	11	Unmodified	_YAYDGKDYLAL_					0	0	0		nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	MULTI-MATCH	A375_MHC_IP_R2	2		2	646.313886	1290.61322	-0.58697	-0.00037937	0.75423	0.00048747	0.16726	0.0001081	646.3139886291618	79.019	0.4058	79.764	79.54	79.946	0.74474	0.082115	0.0010195	NaN	42.835	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1427000			62665	9471	45738	46094							-0.020463437675516616
YAYFLICLN	9	Unmodified	_YAYFLICLN_					0	0	0		tr|U7T041|U7T041_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00718PE=3SV=1	tr|U7T041|U7T041_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00718PE=3SV=1	tr|U7T041|U7T041_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00718PE=3SV=1	MSMS	A375_MHC_IP_R2	2	560.1950073242188	2	560.280803	1118.54705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.494	1	74.229	73.729	74.729	0.73541								0	0	0	0.15131	1	27895	27895		19.439	0.18201	1				62666	29874	45739	46095	61019	61019					-0.007478311433033014
YAYIFLHHAG	10	Unmodified	_YAYIFLHHAG_					0	0	0		nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	MULTI-SECPEP	A375_MHC_IP_R1	1	1192.2913818359375	1	1191.59456	1190.58728	0.10827	0.00012902	0.12146	0.00014473	0.22973	0.00027374	1191.5954193907967	117.97	0.30334	117.97	117.87	118.17	0					6	4	2	0	0	0	0.92051	1	43411	43411		12.532	3.7861	1	16436000			62667	1222	45740	46096	61020	61020					-0.00039148428550106473
YAYLKLLKWDH	11	Unmodified	_YAYLKLLKWDH_					0	0	0		ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	MULTI-SECPEP	A375_MHC_IP_R1	1	725.0816650390625	2	725.398087	1448.78162	-0.46796	-0.00033946	-1.7661	-0.0012812	-2.2341	-0.0016206	725.9006702391514	97.212	0.20161	97.212	97.137	97.338	0					5	3	2	0	0	0	0.99881	1	35745	35745		1.4819	1.1313	1	1067100			62668	8004	45741	46097	61021	61021					0.07518182936746598
YCAEIAHNV	9	Unmodified	_YCAEIAHNV_					0	0	0		RPL32|p.S104F|1|0.24|ENSG00000144713|chr3:12836191-12836191|G/A|missense_variant;ENST00000458542.1_1_3:25791186-25791384:+|nuORF;ENSG00000144713|ENST00000429711|RPL32	RPL32|p.S104F|1|0.24|ENSG00000144713|chr3:12836191-12836191|G/A|missense_variant	RPL32|p.S104F|1|0.24|ENSG00000144713|chr3:12836191-12836191|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	510.69769287109375	2	510.234384	1018.45422	-0.62062	-0.00031666	0.29288	0.00014944	-0.32774	-0.00016723	510.23449661581407	37.887	0.6609	37.887	37.658	38.319	0					19	12	2	0	0	0	0.12771	2	12782	12782;12817		45.7	26.443	1	3235100			62669	5508	45742	46098	61022;61023	61022					-0.054273358766863566
YCAEIAHNV	9	Unmodified	_YCAEIAHNV_					0	0	0		RPL32|p.S104F|1|0.24|ENSG00000144713|chr3:12836191-12836191|G/A|missense_variant;ENST00000458542.1_1_3:25791186-25791384:+|nuORF;ENSG00000144713|ENST00000429711|RPL32	RPL32|p.S104F|1|0.24|ENSG00000144713|chr3:12836191-12836191|G/A|missense_variant	RPL32|p.S104F|1|0.24|ENSG00000144713|chr3:12836191-12836191|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	510.6341247558594	2	510.234384	1018.45422	-1.3598	-0.00069381	0.65327	0.00033332	-0.70651	-0.00036048	510.2346224269701	37.056	0.55791	37.827	37.665	38.223	0.7709					19	10	3	0	0	0	0.36834	1	13574	13574		26.268	9.3258	1	3448300			62670	5508	45742	46098	61024	61024					-0.054273358766863566
YCCGCCFI	8	Unmodified	_YCCGCCFI_					0	0	0			REV__HAMP|p.H74Y|1|0.33|ENSG00000105697|chr19:35285007-35285007|C/T|missense_variant	REV__HAMP|p.H74Y|1|0.33|ENSG00000105697|chr19:35285007-35285007|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	912.1941528320312	1	911.291849	910.284573	-0.36413	-0.00033183	0.87716	0.00079935	0.51304	0.00046753	911.2928704393416	45.747	0.29987	46.512	46.303	46.603	0.76518					9	5	2	0	0	0	0.77839	1	17113	17113		0.79363	0.79363	1	1681700	+		62671	26724	45743	46099	61025	61025					-0.1741581474677787
YCCGCCFI	8	Unmodified	_YCCGCCFI_					0	0	0			REV__HAMP|p.H74Y|1|0.33|ENSG00000105697|chr19:35285007-35285007|C/T|missense_variant	REV__HAMP|p.H74Y|1|0.33|ENSG00000105697|chr19:35285007-35285007|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	911.291849	910.284573	-0.36413	-0.00033183	0.87716	0.00079935	0.51304	0.00046753	911.2928704393416	45.747	0.29987	46.512	46.303	46.603	0.76518	0.046403	-0.00012356	NaN	0.79363	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1681700	+		62672	26724	45743	46099							-0.1741581474677787
YCECCQEAFE	10	Unmodified	_YCECCQEAFE_					0	0	0		ENST00000527862.1_1_17:42811411-42826726:+|nuORF;nc|ENSG00000161692|Q8NFT6-2|DBF4B;nc|ENSG00000161692|Q8NFT6-3|DBF4B;ENSG00000161692|ENST00000315005|DBF4B	ENST00000527862.1_1_17:42811411-42826726:+|nuORF	ENST00000527862.1_1_17:42811411-42826726:+|nuORF	MSMS	A375_MHC_IP_R2	2	612.6695556640625	2	612.703942	1223.39333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.53	1	142.56	142.06	143.06	0.030731								0	0	0	0.15591	1	55717	55717		1.6526	1.1943	1				62673	13107	45744	46100	61026	61026					-0.20942977033473653
YCGLCDSI	8	Unmodified	_YCGLCDSI_					0	0	0		ENSG00000109919|ENST00000302503|MTCH2	ENSG00000109919|ENST00000302503|MTCH2	ENSG00000109919|ENST00000302503|MTCH2	MSMS	A375_MHC_IP_R2	2	437.15777587890625	2	437.177689	872.340825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.752	1	73.487	72.987	73.987	0.73541								0	0	0	0.16876	1	27613	27613		14.582	1.0738	1				62674	2903	45745	46101	61027	61027					-0.10045147314099268
YCGVCSLPTEY	11	Unmodified	_YCGVCSLPTEY_					0	0	0		ENST00000539463.1_1_12:123238248-123247514:+|nuORF;ENSG00000139726|ENST00000280557|DENR	ENST00000539463.1_1_12:123238248-123247514:+|nuORF	ENST00000539463.1_1_12:123238248-123247514:+|nuORF	MSMS	A375_MHC_IP_R1	1	412.2486572265625	3	412.175475	1233.5046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.2749	1	3.2749	2.7749	3.7749	0								0	0	0	0.16354	1	753	753		0.08335	0	1				62675	5106	45746	46102	61028	61028					-0.102815943338328
YCGWNSGG	8	Unmodified	_YCGWNSGG_					0	0	0		ENST00000329875.12_1_17:79890274-79890556:-|nuORF	ENST00000329875.12_1_17:79890274-79890556:-|nuORF	ENST00000329875.12_1_17:79890274-79890556:-|nuORF	MSMS	A375_MHC_IP_R2	2	422.1516418457031	2	422.158145	842.301738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.82	1	102.58	102.08	103.08	0.76428								0	0	0	0.16876	1	38591	38591		0.79363	0	1				62676	10758	45747	46103	61029	61029					-0.12572111553447485
YCKLKDKID	9	Unmodified	_YCKLKDKID_					0	0	0			REV__ENST00000461716.1_1_13:115030603-115037915:+|nuORF	REV__ENST00000461716.1_1_13:115030603-115037915:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	375.9212646484375	3	375.870603	1124.58998	-0.18293	-6.8759E-05	-0.58821	-0.00022109	-0.77114	-0.00028985	375.87035592402987	25.573	0.71074	26.232	25.992	26.703	0.65992					15	13	2	0	0	0	0.67332	1	8694	8694		6.1918	1.2948	1	2974000	+		62677	18523	45748	46104	61030	61030					0.03266938914111961
YCLPLSHE	8	Unmodified	_YCLPLSHE_					0	0	0		ENST00000372621.8_1_1:41477751-41477820:+|nuORF	ENST00000372621.8_1_1:41477751-41477820:+|nuORF	ENST00000372621.8_1_1:41477751-41477820:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	481.6509704589844	2	481.226028	960.437503	-0.55971	-0.00026935	0.50402	0.00024255	-0.05569	-2.6799E-05	481.2262881956697	102.94	1.27	103.7	102.72	103.99	0.76428					40	24	2	0	0	0	0.75322	1	39028	39028		19.439	3.5918	1	1435900			62678	11207	45749	46105	61031	61031					-0.04429836762653849
YCLSCWIFY	9	Unmodified	_YCLSCWIFY_					0	0	0		ENST00000367808.7_1_1:169356661-169356787:+|nuORF	ENST00000367808.7_1_1:169356661-169356787:+|nuORF	ENST00000367808.7_1_1:169356661-169356787:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	599.65625	2	599.259013	1196.50347	-0.31887	-0.00019108	-2.6863	-0.0016098	-3.0052	-0.0018009	599.2571072961379	96.623	0.60945	96.623	96.376	96.985	0					22	11	3	0	0	0	0.64808	1	35522	35522		11.64	0	1	2063600			62679	11103	45750	46106	61032	61032					-0.08691763912111128
YCNHHNDEY	9	Unmodified	_YCNHHNDEY_					0	0	0			REV__ENSG00000225526|ENST00000564146|MKRN2OS	REV__ENSG00000225526|ENST00000564146|MKRN2OS	MSMS	A375_MHC_IP_R1	1	597.7825317382812	2	597.717087	1193.41962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.08	1	148.08	147.58	148.58	0								0	0	0	0.15486	1	56556	56556		0.52476	0	1		+		62680	22714	45751	46107	61033	61033					-0.16935203755451766
YCNHHNDEY	9	Unmodified	_YCNHHNDEY_					0	0	0			REV__ENSG00000225526|ENST00000564146|MKRN2OS	REV__ENSG00000225526|ENST00000564146|MKRN2OS	MSMS	A375_MHC_IP_R1	1	597.78271484375	2	597.717087	1193.41962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.66	1	148.66	148.16	149.16	0								0	0	0	0.15486	1	56762	56762		0.52476	0	1		+		62681	22714	45751	46107	61034	61034					-0.16935203755451766
YCRHVLAA	8	Unmodified	_YCRHVLAA_					0	0	0		ENSG00000123454|ENST00000393056|DBH	ENSG00000123454|ENST00000393056|DBH	ENSG00000123454|ENST00000393056|DBH	MULTI-MSMS	A375_MHC_IP_R2	2	932.8763427734375	1	932.477083	931.469806	-0.069019	-6.4359E-05	-0.54693	-0.00051	-0.61595	-0.00057436	932.4762551073252	144.08	0.18484	144.1	143.99	144.17	0.024414					5	3	2	0	0	0	0.77839	1	56299	56299		0.79363	0	1	3555000			62682	3848	45752	46108	61035	61035					0.0013299543099947186
YCRSFCQTL	9	Unmodified	_YCRSFCQTL_					0	0	0		ENSG00000117000|ENST00000372771|RLF	ENSG00000117000|ENST00000372771|RLF	ENSG00000117000|ENST00000372771|RLF	MSMS	A375_MHC_IP_R2	2	560.7234497070312	2	560.749344	1119.48414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.144	1	90.876	90.376	91.376	0.7318								0	0	0	0.15283	1	34298	34298		16.942	1.0951	1				62683	3451	45753	46109	61036	61036					-0.07082720203015924
YCSLSEPEV	9	Unmodified	_YCSLSEPEV_					0	0	0		ENSG00000100335|ENST00000325301|MIEF1	ENSG00000100335|ENST00000325301|MIEF1	ENSG00000100335|ENST00000325301|MIEF1	MULTI-MSMS	A375_MHC_IP_R1	1	514.1253662109375	2	513.726058	1025.43756	-0.68705	-0.00035296	-1.5455	-0.00079398	-2.2326	-0.0011469	513.7257883160536	86.514	0.96207	86.514	86.121	87.083	0					35	18	3	0	0	0	0.25276	1	31721	31721		34.102	0	1	8121700			62684	2159	45754	46110	61037	61037					-0.0741388155331606
YCSLSEPEV	9	Unmodified	_YCSLSEPEV_					0	0	0		ENSG00000100335|ENST00000325301|MIEF1	ENSG00000100335|ENST00000325301|MIEF1	ENSG00000100335|ENST00000325301|MIEF1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	513.726058	1025.43756	-0.68705	-0.00035296	-1.5455	-0.00079398	-2.2326	-0.0011469	513.7257883160536	86.514	0.96207	86.514	86.121	87.083	0	-0.0099278	0.00012518	NaN	34.102	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8121700			62685	2159	45754	46110							-0.0741388155331606
YCSNVEESSY	10	Unmodified	_YCSNVEESSY_					0	0	0			REV__ENSG00000116996|ENST00000366570|ZP4	REV__ENSG00000116996|ENST00000366570|ZP4	MULTI-MSMS	A375_MHC_IP_R2	2	591.1289672851562	2	590.726786	1179.43902	-0.38751	-0.00022891	1.9606	0.0011582	1.5731	0.00092929	590.7285547293114	111.19	0.71692	111.93	111.55	112.26	0.73692					31	12	3	0	0	0	0.38709	1	41932	41932		34.932	7.3033	1	7847800	+		62686	17987	45755	46111	61038	61038					-0.14352292255216526
YCSNVEESSY	10	Unmodified	_YCSNVEESSY_					0	0	0			REV__ENSG00000116996|ENST00000366570|ZP4	REV__ENSG00000116996|ENST00000366570|ZP4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	590.726786	1179.43902	-0.38751	-0.00022891	1.9606	0.0011582	1.5731	0.00092929	590.7285547293114	111.19	0.71692	111.93	111.55	112.26	0.73692	0.039929	0.00017277	NaN	34.932	31	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7847800	+		62687	17987	45755	46111							-0.14352292255216526
YCWENFVCNE	10	Unmodified	_YCWENFVCNE_					0	0	0		ENSG00000243811|ENST00000216099|APOBEC3D	ENSG00000243811|ENST00000216099|APOBEC3D	ENSG00000243811|ENST00000216099|APOBEC3D	MSMS	A375_MHC_IP_R1	1	653.7527465820312	2	653.746998	1305.47944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.369	1	94.369	93.869	94.869	0								0	0	0	0.15451	1	34687	34687		6.2058	0	1				62688	9815	45756	46112	61039	61039					-0.1610764913643834
YCWSCWDDMR	10	Unmodified	_YCWSCWDDMR_					0	0	0		ENST00000473905.6_1_1:155023065-155023341:+|nuORF;nc|ENSG00000163357|Q5T197-3|DCST1;ENSG00000163357|ENST00000295542|DCST1	ENST00000473905.6_1_1:155023065-155023341:+|nuORF	ENST00000473905.6_1_1:155023065-155023341:+|nuORF	MSMS	A375_MHC_IP_R2	2	455.40032958984375	3	455.500076	1363.4784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.536	1	59.285	58.785	59.785	0.74894								0	0	0	0.15561	1	22147	22147		2.6312	1.8547	1				62689	6653	45757	46113	61040	61040					-0.1888018677702803
YDAWSYVY	8	Unmodified	_YDAWSYVY_					0	0	0			REV__tr|U7STU3|U7STU3_FUSNUSpermidine/putrescinetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01188PE=4SV=1	REV__tr|U7STU3|U7STU3_FUSNUSpermidine/putrescinetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01188PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	533.6907958984375	2	533.729458	1065.44436	-0.82187	-0.00043866	-1.6489	-0.00088008	-2.4708	-0.0013187	533.7293518824429	27.053	0.45308	27.053	26.928	27.381	0					21	8	3	0	0	0	0.72761	1	8235	8235		26.341	0.94196	1	7541000	+		62690	28505	45758	46114	61041	61041					-0.08574200610428306
YDAYAYCRQS	10	Unmodified	_YDAYAYCRQS_					0	0	0			REV__tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1	REV__tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1	MSMS	A375_MHC_IP_R2	2	620.2680053710938	2	620.258588	1238.50262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.56	1	127.82	127.32	128.32	0.26593								0	0	0	0.1552	1	50038	50038		3.9444	0	1		+		62691	28470	45759	46115	61042	61042					-0.10708887027476521
YDDDEEESGDH	11	Unmodified	_YDDDEEESGDH_					0	0	0			REV__ENSG00000023839|ENST00000647814|ABCC2	REV__ENSG00000023839|ENST00000647814|ABCC2	MSMS	A375_MHC_IP_R2	2	655.7825317382812	2	655.718201	1309.42185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.83	1	137.91	137.41	138.41	0.083969								0	0	0	0.1636	1	54076	54076		0	0	1		+		62692	16283	45760	46116	61043	61043					-0.22048541327308158
YDDELKLL	8	Unmodified	_YDDELKLL_					0	0	0			REV__tr|U7SM08|U7SM08_FUSNUProbableD-serinedehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dsdAPE=3SV=1	REV__tr|U7SM08|U7SM08_FUSNUProbableD-serinedehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dsdAPE=3SV=1	MSMS	A375_MHC_IP_R2	2	504.6920166015625	2	504.76604	1007.51753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.011	1	84.751	84.251	85.251	0.73962								0	0	0	0.16876	1	31934	31934		14.582	0.67564	1		+		62693	28284	45761	46117	61044	61044					0.014069281122033317
YDDGFRLFY	9	Unmodified	_YDDGFRLFY_					0	0	0			REV__nc|ENSG00000153936|Q7LGA3-3|HS2ST1	REV__nc|ENSG00000153936|Q7LGA3-3|HS2ST1	MULTI-SECPEP	A375_MHC_IP_R1	1	399.62432861328125	3	399.185468	1194.53457	-0.14201	-5.6688E-05	0.85621	0.00034179	0.7142	0.0002851	399.18622505004305	56.87	1.6783	56.87	55.635	57.313	0					52	32	4	0	0	0	0.77834	1	20198	20198		5.2969	5.2969	1	3279500	+		62694	19857	45762	46118	61045	61045					-0.05491151282012652
YDDKIDYR	8	Unmodified	_YDDKIDYR_					0	0	0			REV__nc|ENSG00000185008|Q9HCK4|ROBO2	REV__nc|ENSG00000185008|Q9HCK4|ROBO2	MULTI-MSMS	A375_MHC_IP_R1	1	544.656005859375	2	544.256371	1086.49819	-0.84972	-0.00046247	0.55996	0.00030476	-0.28977	-0.00015771	544.2565304551068	23.713	0.25382	23.713	23.584	23.838	0					11	4	3	0	0	0	0.2095	1	6577	6577		66.457	22.598	1	19806000	+		62695	21857	45763	46119	61046	61046					-0.04160028178716857
YDDKIDYR	8	Unmodified	_YDDKIDYR_					0	0	0			REV__nc|ENSG00000185008|Q9HCK4|ROBO2	REV__nc|ENSG00000185008|Q9HCK4|ROBO2	MULTI-MSMS	A375_MHC_IP_R2	2	544.655517578125	2	544.256371	1086.49819	-1.16	-0.00063134	0.16961	9.2311E-05	-0.99039	-0.00053903	544.2563009389202	22.962	0.46007	23.592	23.317	23.777	0.63015					19	8	3	0	0	0	0.31391	1	7317	7317		57.722	13.864	1	13384000	+		62696	21857	45763	46119	61047	61047					-0.04160028178716857
YDDKIDYR	8	Unmodified	_YDDKIDYR_					0	0	0			REV__nc|ENSG00000185008|Q9HCK4|ROBO2	REV__nc|ENSG00000185008|Q9HCK4|ROBO2	MULTI-MSMS	A375_MHC_IP_R2	2	545.1660766601562	2	544.256371	1086.49819	-1.092	-0.00059433	-0.15933	-8.6717E-05	-1.2513	-0.00068105	544.2562239451366	23.627	0.25399	24.257	24.079	24.333	0.63014					6	4	2	0	0	0	0.77501	1	7629	7629		13.042	0.51092	1	3313600	+		62697	21857	45763	46119	61048	61048					-0.04160028178716857
YDDKIDYR	8	Unmodified	_YDDKIDYR_					0	0	0			REV__nc|ENSG00000185008|Q9HCK4|ROBO2	REV__nc|ENSG00000185008|Q9HCK4|ROBO2	MULTI-MATCH	A375_MHC_IP_R1	1		2	544.256371	1086.49819	-0.79523	-0.00043281	0.75776	0.00041241	-0.037471	-2.0394E-05	544.256674914442	24.08	0.30482	24.08	23.889	24.194	0	-0.088632	0.00055287	NaN	13.042	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3539000	+		62698	21857	45763	46119							-0.04160028178716857
YDDKIDYR	8	Unmodified	_YDDKIDYR_					0	0	0			REV__nc|ENSG00000185008|Q9HCK4|ROBO2	REV__nc|ENSG00000185008|Q9HCK4|ROBO2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	544.256371	1086.49819	-0.84972	-0.00046247	0.55996	0.00030476	-0.28977	-0.00015771	544.2565304551068	23.713	0.25382	23.713	23.584	23.838	0	0.06009	0.00022144	NaN	66.457	11	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19806000	+		62699	21857	45763	46119							-0.04160028178716857
YDDKIDYR	8	Unmodified	_YDDKIDYR_					0	0	0			REV__nc|ENSG00000185008|Q9HCK4|ROBO2	REV__nc|ENSG00000185008|Q9HCK4|ROBO2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	544.256371	1086.49819	-1.16	-0.00063134	0.16961	9.2311E-05	-0.99039	-0.00053903	544.2563009389202	22.962	0.46007	23.592	23.317	23.777	0.63015	-0.06009	-0.00020346	NaN	66.457	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13384000	+		62700	21857	45763	46119							-0.04160028178716857
YDDTDDDDPF	10	Unmodified	_YDDTDDDDPF_					0	0	0		ENST00000476863.1_1_19:54946248-54947306:+|nuORF;nc|ENSG00000167614|Q9H313-4|TTYH1;ENST00000489425.5_1_19:54937741-54947306:+|nuORF;ENSG00000167614|ENST00000376530|TTYH1;nc|ENSG00000167614|Q9H313-2|TTYH1;ENST00000487134.5_1_19:54927741-54947306:+|nuORF	ENST00000476863.1_1_19:54946248-54947306:+|nuORF	ENST00000476863.1_1_19:54946248-54947306:+|nuORF	MSMS	A375_MHC_IP_R1	1	609.1173095703125	2	609.20948	1216.40441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.107	1	85.107	84.607	85.607	0								0	0	0	0.15591	1	31187	31187		1.6526	0	1				62701	7199	45764	46120	61049	61049					-0.19513836862324752
YDDVSSFRAKT	11	Unmodified	_YDDVSSFRAKT_					0	0	0		ENSG00000117395|ENST00000236051|EBNA1BP2;ENST00000463906.1_1_1:43630116-43636618:-|nuORF	ENSG00000117395|ENST00000236051|EBNA1BP2	ENSG00000117395|ENST00000236051|EBNA1BP2	MULTI-MSMS	A375_MHC_IP_R2	2	645.2540893554688	2	644.812042	1287.60953	-0.96639	-0.00062314	0.11463	7.3913E-05	-0.85176	-0.00054923	644.8121687010605	19.105	0.25011	19.708	19.583	19.833	0.60308					7	4	2	0	0	0	0.66366	1	5779	5779		18.373	3.1246	1	2239500			62702	3479	45765	46121	61050	61050					-0.022770135414248216
YDELTLHD	8	Unmodified	_YDELTLHD_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000013050	REV__CON__ENSEMBL:ENSBTAP00000013050	MULTI-MSMS	A375_MHC_IP_R1	1	503.62939453125	2	503.229822	1004.44509	0.089326	4.4951E-05	-0.75644	-0.00038067	-0.66712	-0.00033571	503.22933870912306	48.832	0.65769	48.832	48.526	49.184	0					20	12	3	0	0	0	0.77603	1	17270	17270		9.3474	0.75416	1	2383400	+	+	62703	15840	45766	46122	61051	61051					-0.05695405961364486
YDEVPEEGP	9	Unmodified	_YDEVPEEGP_					0	0	0		nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000465814.5_1_11:72423956-72425365:-|nuORF	nc|ENSG00000186635|Q96P48-3|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	MSMS	A375_MHC_IP_R2	2	517.5751342773438	2	517.719287	1033.42402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.793	1	87.526	87.026	88.026	0.733								0	0	0	0.15486	1	33007	33007		7.9102	0.62092	1				62704	8766	45767	46123	61052	61052					-0.09135416060894386
YDEWNITL	8	Unmodified	_YDEWNITL_					0	0	0			REV__ENST00000378770.1_1_4:190394307-190396341:+|nuORF	REV__ENST00000378770.1_1_4:190394307-190396341:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	527.2105712890625	2	527.248015	1052.48148	-0.15791	-8.3259E-05	-0.58856	-0.00031032	-0.74647	-0.00039358	527.2478089365703	112.58	0.51162	112.58	112.33	112.84	0					12	9	2	0	0	0	0.77123	1	41237	41237		14.582	0	1	1855400	+		62705	24186	45768	46124	61053	61053					-0.042665290646709764
YDEWNITL	8	Unmodified	_YDEWNITL_					0	0	0			REV__ENST00000378770.1_1_4:190394307-190396341:+|nuORF	REV__ENST00000378770.1_1_4:190394307-190396341:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	526.7144165039062	2	527.248015	1052.48148	-0.15791	-8.3259E-05	-0.58856	-0.00031032	-0.74647	-0.00039358	527.2478089365703	112.58	0.51162	112.58	112.33	112.84	0					12	9	2	0	0	0	0.97144	1	41274	41274		14.582	0	1	1855400	+		62706	24186	45768	46124	61054	61054					-0.042665290646709764
YDFYHYFYMVT	11	Unmodified	_YDFYHYFYMVT_					0	0	0		ENSG00000101188|ENST00000370501|NTSR1	ENSG00000101188|ENST00000370501|NTSR1	ENSG00000101188|ENST00000370501|NTSR1	MSMS	A375_MHC_IP_R2	2	516.592041015625	3	516.888323	1547.64314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.047	1	81.791	81.291	82.291	0.74474								0	0	0	0.16334	1	30776	30776		0.45452	0	1				62707	2265	45769	46125	61055	61055					-0.10877728093919359
YDGKGVGL	8	Unmodified	_YDGKGVGL_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	A375_MHC_IP_R2	2	405.113525390625	2	404.713611	807.412668	-0.49273	-0.00019942	-0.01706	-6.9044E-06	-0.50979	-0.00020632	404.7136330460686	52.762	0.60888	53.513	53.233	53.842	0.75105					18	11	2	0	0	0	0.70843	1	19921	19921		32.117	0	1	3368000			62708	6867	45770	46126	61056	61056					0.0012585142628722679
YDGREHTV	8	Unmodified	_YDGREHTV_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;chrX:151919037-151923453|150|252.27|0.24|10.04|+|ENST00000431971|MAGEA4,MAGEA4;chrX:151914958-151923453|148|308.46|0.33|9.87|+|ENST00000441865|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-SECPEP	A375_MHC_IP_R1	1	489.1277770996094	2	488.727781	975.441008	-0.031556	-1.5423E-05	-0.4672	-0.00022834	-0.49876	-0.00024376	488.72755797659494	21.479	0.40606	21.479	21.25	21.656	0					21	7	4	0	0	0	0.13508	1	5629	5629		110.67	66.816	1	21535000			62709	520	45771	46127	61057	61057					-0.047694506644234025
YDGREHTV	8	Unmodified	_YDGREHTV_					0	0	0		chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|134|206.76|0.24|9.73|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|148|312.09|0.36|9.76|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|134|210.81|0.27|9.62|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|134|213.69|0.29|9.54|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;chrX:151919037-151923453|150|252.27|0.24|10.04|+|ENST00000431971|MAGEA4,MAGEA4;chrX:151914958-151923453|148|308.46|0.33|9.87|+|ENST00000441865|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151914276-151923453|148|307.63|0.34|9.83|+|ENST00000430273|MAGEA4,MAGEA4	MULTI-MSMS	A375_MHC_IP_R2	2	489.1274719238281	2	488.727781	975.441008	-0.88323	-0.00043166	0.030794	1.505E-05	-0.85244	-0.00041661	488.72772604741533	19.92	0.8616	20.53	20.248	21.109	0.61029					40	16	3	0	0	0	0.16721	1	6123	6123		75.761	41.658	1	8046900			62710	520	45771	46127	61058	61058					-0.047694506644234025
YDGYPEQPFY	10	Unmodified	_YDGYPEQPFY_					0	0	0			REV__ENSG00000150750|ENST00000280325|POU2AF2	REV__ENSG00000150750|ENST00000280325|POU2AF2	MULTI-MSMS	A375_MHC_IP_R1	1	639.7059326171875	2	639.769311	1277.52407	-0.69253	-0.00044306	-1.923	-0.0012303	-2.6155	-0.0016733	639.7672433133463	76.334	1.3657	76.334	75.564	76.93	0					42	26	2	0	0	0	0.6806	2	27623	27533;27623		14.838	4.0143	1	3077500	+		62711	19725	45772	46128	61059;61060	61060					-0.10359178727094331
YDGYPEQPFY	10	Unmodified	_YDGYPEQPFY_					0	0	0			REV__ENSG00000150750|ENST00000280325|POU2AF2	REV__ENSG00000150750|ENST00000280325|POU2AF2	MULTI-SECPEP	A375_MHC_IP_R1	1	640.166259765625	2	639.769311	1277.52407	-0.69253	-0.00044306	-1.923	-0.0012303	-2.6155	-0.0016733	639.7672433133463	76.334	1.3657	76.334	75.564	76.93	0					42	26	2	0	0	0	0.74754	1	27872	27872		29.082	1.4528	1	3077500	+		62712	19725	45772	46128	61061	61061					-0.10359178727094331
YDGYPEQPFY	10	Unmodified	_YDGYPEQPFY_					0	0	0			REV__ENSG00000150750|ENST00000280325|POU2AF2	REV__ENSG00000150750|ENST00000280325|POU2AF2	MULTI-SECPEP	A375_MHC_IP_R1	1	640.16748046875	2	639.769311	1277.52407	-0.58938	-0.00037707	-1.1044	-0.00070656	-1.6938	-0.0010836	640.2711393808722	72.702	1.4697	72.702	72.474	73.943	0					45	28	2	0	0	0	0.8125	1	26460	26460		24.021	2.4836	1	1930900	+		62713	19725	45772	46128	61062	61062					-0.10359178727094331
YDGYPEQPFY	10	Unmodified	_YDGYPEQPFY_					0	0	0			REV__ENSG00000150750|ENST00000280325|POU2AF2	REV__ENSG00000150750|ENST00000280325|POU2AF2	MULTI-MSMS	A375_MHC_IP_R2	2	639.7060546875	2	639.769311	1277.52407	-0.7727	-0.00049435	-1.64	-0.0010492	-2.4127	-0.0015436	640.2707905275307	74.4	1.983	75.137	73.889	75.872	0.73752					56	38	2	0	0	0	0.60556	1	28501	28501		20.454	11.071	1	2464000	+		62714	19725	45772	46128	61063	61063					-0.10359178727094331
YDHQPASY	8	Unmodified	_YDHQPASY_					0	0	0			REV__ENSG00000064195|ENST00000434704|DLX3	REV__ENSG00000064195|ENST00000434704|DLX3	MSMS	A375_MHC_IP_R2	2	490.6398010253906	2	490.709057	979.40356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.745	1	53.496	52.996	53.996	0.75105								0	0	0	0.16876	1	19887	19887		14.582	4.3983	1		+		62715	16473	45773	46129	61064	61064					-0.08696541930044077
YDIEWLTI	8	Unmodified	_YDIEWLTI_					0	0	0		nc|ENSG00000138231|Q9UK59-2|DBR1;ENSG00000138231|ENST00000260803|DBR1	nc|ENSG00000138231|Q9UK59-2|DBR1	nc|ENSG00000138231|Q9UK59-2|DBR1	MSMS	A375_MHC_IP_R1	1	526.7142944335938	2	526.768583	1051.52261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.34	1	111.34	110.84	111.84	0								0	0	0	0.16876	1	40815	40815		24.674	2.9272	1				62716	4972	45774	46130	61065	61065					-0.0010876802518851036
YDISLGTP	8	Unmodified	_YDISLGTP_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MSMS	A375_MHC_IP_R2	2	433.2850646972656	2	433.218726	864.422899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.42	1	131.61	131.11	132.11	0.18953								0	0	0	0.16876	1	51696	51696		2.5775	0	1		+		62717	16777	45775	46131	61066	61066					-0.01473585639121211
YDKHSESSY	9	Unmodified	_YDKHSESSY_					0	0	0			REV__nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1	REV__nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1	MULTI-MSMS	A375_MHC_IP_R1	1	559.2056274414062	2	558.235635	1114.45672	-0.52507	-0.00029311	-0.80951	-0.0004519	-1.3346	-0.00074501	558.2353097369321	73.693	0.70926	73.693	73.336	74.045	0					29	13	3	0	0	0	0.69674	1	26848	26848		7.2892	1.0834	1	3609600	+		62718	21090	45776	46132	61067	61067					-0.09593208938031239
YDKLNKWQKYF	11	Unmodified	_YDKLNKWQKYF_					0	0	0			REV__tr|U7SWQ5|U7SWQ5_FUSNU4-alpha-glucanotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01136PE=3SV=1	REV__tr|U7SWQ5|U7SWQ5_FUSNU4-alpha-glucanotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01136PE=3SV=1	MSMS	A375_MHC_IP_R2	2	511.639892578125	3	511.601393	1531.78235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.944	1	82.687	82.187	83.187	0.74293								0	0	0	0.16297	1	31128	31128		1.3296	0.82369	1		+		62719	28606	45777	46133	61068	61068					0.03772977585799708
YDKVDHFSY	9	Unmodified	_YDKVDHFSY_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	A375_MHC_IP_R1	1	586.6913452148438	2	587.264196	1172.51384	-0.25146	-0.00014767	-3.6066	-0.002118	-3.858	-0.0022657	587.7624497496869	44.089	0.25538	44.089	43.909	44.165	0					5	4	2	0	0	0	0.65246	1	15327	15327		15.847	7.6917	1	755200	+		62720	21249	45778	46134	61069	61069					-0.06551741661655797
YDKVTEEQF	9	Unmodified	_YDKVTEEQF_					0	0	0			REV__nc|ENSG00000155506|Q6PKG0-3|LARP1	REV__nc|ENSG00000155506|Q6PKG0-3|LARP1	MULTI-SECPEP	A375_MHC_IP_R1	1	579.1666870117188	2	579.769311	1157.52407	-0.00060475	-3.5061E-07	1.3569	0.00078669	1.3563	0.00078634	579.7698492756024	47.886	0.95913	47.886	47.567	48.526	0					29	18	3	0	0	0	0.58271	1	17013	17013		26.884	4.1474	1	4676100	+		62721	19924	45779	46135	61070	61070					-0.048391787270929854
YDLGRSYAM	9	Unmodified	_YDLGRSYAM_					0	0	0		nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043|ENST00000650932|UHRF1;ENST00000540175.1_1_12:20704556-20705942:+|nuORF	nc|ENSG00000276043|Q96T88-2|UHRF1	nc|ENSG00000276043|Q96T88-2|UHRF1	MULTI-MSMS	A375_MHC_IP_R1	1	538.6472778320312	2	538.247492	1074.48043	-0.5974	-0.00032155	-0.16529	-8.8965E-05	-0.76269	-0.00041052	538.2475086504119	56.89	0.71432	56.89	56.548	57.263	0					40	13	4	0	0	0	0.13797	3	20350	20350;20409;20471		43.858	1.9972	1	16294000			62722	10017	45780	46136	61071;61072;61073	61071					-0.05383066705235251
YDLGRSYAM	9	Unmodified	_YDLGRSYAM_					0	0	0		nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043|ENST00000650932|UHRF1;ENST00000540175.1_1_12:20704556-20705942:+|nuORF	nc|ENSG00000276043|Q96T88-2|UHRF1	nc|ENSG00000276043|Q96T88-2|UHRF1	MULTI-MSMS	A375_MHC_IP_R2	2	538.7027587890625	2	538.247492	1074.48043	-1.0941	-0.00058888	-0.25409	-0.00013676	-1.3481	-0.00072564	538.2474602618494	56.103	0.8169	56.853	56.54	57.356	0.75014					38	15	4	0	0	0	0.53367	2	21272	21183;21272		18.146	1.9972	1	18610000			62723	10017	45780	46136	61074;61075	61075					-0.05383066705235251
YDLHTEQCI	9	Unmodified	_YDLHTEQCI_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-2|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MSMS	A375_MHC_IP_R1	1	561.2158813476562	2	561.250231	1120.48591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.944	1	98.944	98.444	99.444	0								0	0	0	0.15486	1	36350	36350		12.532	0.89125	1				62724	2211	45781	46137	61076	61076					-0.06951387913409235
YDLLNWKKK	9	Unmodified	_YDLLNWKKK_					0	0	0		ENSG00000141200|ENST00000268919|KIF2B	ENSG00000141200|ENST00000268919|KIF2B	ENSG00000141200|ENST00000268919|KIF2B	MSMS	A375_MHC_IP_R1	1	403.6328430175781	3	403.232641	1206.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.0383	1	9.0383	8.5383	9.5383	0								0	0	0	0.15486	1	2069	2069		0.23584	0	1				62725	5220	45782	46138	61077	61077					0.08102266811101799
YDLYSCTSI	9	Unmodified	_YDLYSCTSI_					0	0	0		ENSG00000162851|ENST00000366514|TFB2M	ENSG00000162851|ENST00000366514|TFB2M	ENSG00000162851|ENST00000366514|TFB2M	MULTI-MSMS	A375_MHC_IP_R1	1	532.6350708007812	2	532.733883	1063.45321	-0.58515	-0.00031173	3.2852	0.0017501	2.7001	0.0014384	532.7361647504345	102.6	0.30339	102.6	102.51	102.81	0					7	5	2	0	0	0	0.58047	1	37750	37750		15.847	5.0233	1	699220			62726	6604	45783	46139	61078	61078					-0.07597595036236271
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		PARD3B|p.S940L|1|0.22|ENSG00000116117|chr2:205440447-205440447|C/T|missense_variant;nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	PARD3B|p.S940L|1|0.22|ENSG00000116117|chr2:205440447-205440447|C/T|missense_variant	PARD3B|p.S940L|1|0.22|ENSG00000116117|chr2:205440447-205440447|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	517.2257690429688	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.084	1	69.819	69.319	70.319	0.73511								0	0	0	0.16876	1	26177	26177		0	0	1				62727	3369	45784	46140	61079	61079					-0.20963274352425287
YDNLNYTL	8	Unmodified	_YDNLNYTL_					0	0	0		ENSG00000203857|ENST00000369413|HSD3B1	ENSG00000203857|ENST00000369413|HSD3B1	ENSG00000203857|ENST00000369413|HSD3B1	MULTI-MSMS	A375_MHC_IP_R1	1	508.2003479003906	2	508.24019	1014.46583	-0.44364	-0.00022547	-0.15782	-8.0211E-05	-0.60146	-0.00030569	508.2400824058764	61.05	0.71277	61.05	60.77	61.483	0					20	13	2	0	0	0	0.77488	1	21914	21914		13.508	4.1604	1	2934800			62728	9397	45785	46141	61080	61080					-0.0408281558170529
YDNVEKNLI	9	Unmodified	_YDNVEKNLI_					0	0	0		TEKT5|p.H207Y|1|0.27|ENSG00000153060|chr16:10689971-10689971|G/A|missense_variant	TEKT5|p.H207Y|1|0.27|ENSG00000153060|chr16:10689971-10689971|G/A|missense_variant	TEKT5|p.H207Y|1|0.27|ENSG00000153060|chr16:10689971-10689971|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	553.7161865234375	2	554.287671	1106.56079	-0.7362	-0.00040807	-2.7461	-0.0015221	-3.4823	-0.0019302	554.7863162192408	66.265	0.30469	66.265	66.173	66.478	0					7	5	2	0	0	0	0.60917	1	23963	23963		25.399	10.151	1	634040			62729	29321	45786	46142	61081	61081					0.011771178894832701
YDNWIKDADP	10	Unmodified	_YDNWIKDADP_					0	0	0		ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	MULTI-MSMS	A375_MHC_IP_R1	1	619.1795654296875	2	618.78021	1235.54587	-0.46839	-0.00028983	-0.10532	-6.5173E-05	-0.57372	-0.000355	618.7800569479167	52.581	0.40873	52.581	52.387	52.796	0					16	7	3	0	0	0	0.39599	1	18781	18781		34.402	6.7729	1	2403400			62730	6796	45787	46143	61082	61082					-0.06248373978519339
YDPAAGCWSF	10	Unmodified	_YDPAAGCWSF_					0	0	0		ENSG00000234438|ENST00000432196|KBTBD13	ENSG00000234438|ENST00000432196|KBTBD13	ENSG00000234438|ENST00000432196|KBTBD13	MSMS	A375_MHC_IP_R2	2	558.6756591796875	2	558.726392	1115.43823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.7	1	91.435	90.935	91.935	0.7345								0	0	0	0.14522	1	34510	34510		26.884	5.137	1				62731	9739	45788	46144	61083	61083					-0.11487042113594725
YDPEKDNR	8	Unmodified	_YDPEKDNR_					0	0	0		ENSG00000129518|ENST00000250454|EAPP	ENSG00000129518|ENST00000250454|EAPP	ENSG00000129518|ENST00000250454|EAPP	MULTI-SECPEP	A375_MHC_IP_R1	1	1035.6907958984375	1	1036.46941	1035.46214	0.21473	0.00022257	-0.51309	-0.00053181	-0.29836	-0.00030924	1036.4690837527064	34.846	0.71275	34.846	34.708	35.421	0					17	13	2	0	0	0	0.972	1	11764	11764		8.5933	3.8373	1	8040900			62732	4195	45789	46145	61084	61084					-0.054174853555878144
YDPEKDNR	8	Unmodified	_YDPEKDNR_					0	0	0		ENSG00000129518|ENST00000250454|EAPP	ENSG00000129518|ENST00000250454|EAPP	ENSG00000129518|ENST00000250454|EAPP	MULTI-MATCH	A375_MHC_IP_R2	2		1	1036.46941	1035.46214	-0.31221	-0.00032359	-0.80663	-0.00083605	-1.1188	-0.0011596	1036.4683963740529	34.177	0.50897	34.929	34.702	35.211	0.75225	0.041655	-4.5598E-05	NaN	8.5933	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7669700			62733	4195	45789	46145							-0.054174853555878144
YDSDDDDEEM	10	Unmodified	_YDSDDDDEEM_					0	0	0			REV__nc|ENSG00000171634|Q12830-4|BPTF	REV__nc|ENSG00000171634|Q12830-4|BPTF	MSMS	A375_MHC_IP_R2	2	617.1325073242188	2	617.19043	1232.36631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.29	1	103.06	102.56	103.56	0.76428								0	0	0	0.1552	1	38762	38762		3.9444	0.94915	1		+		62734	21084	45790	46146	61085	61085					-0.24058090839321267
YDSGCCGG	8	Unmodified	_YDSGCCGG_					0	0	0			REV__ENSG00000132589|ENST00000394908|FLOT2	REV__ENSG00000132589|ENST00000394908|FLOT2	MULTI-SECPEP	A375_MHC_IP_R2	2	761.622802734375	1	761.222901	760.215625	-0.71258	-0.00054243	0.99612	0.00075827	0.28354	0.00021584	761.223575807032	144.49	0.19632	144.51	144.42	144.61	0.024414					9	4	3	0	0	0	0.972	1	56442	56442		0	0	1	2338800	+		62735	18664	45791	46147	61086	61086					-0.1740743945046006
YDSGCCGG	8	Unmodified	_YDSGCCGG_					0	0	0			REV__ENSG00000132589|ENST00000394908|FLOT2	REV__ENSG00000132589|ENST00000394908|FLOT2	MULTI-MATCH	A375_MHC_IP_R1	1		1	761.222901	760.215625	-0.84934	-0.00064654	1.0268	0.00078162	0.17745	0.00013508	761.2236050580478	144.49	0.19659	144.49	144.35	144.55	0	-0.010668	6.9208E-06	NaN	0	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2170800	+		62736	18664	45791	46147							-0.1740743945046006
YDSIGAERRY	10	Unmodified	_YDSIGAERRY_					0	0	0			REV__ENSG00000001036|ENST00000002165|FUCA2	REV__ENSG00000001036|ENST00000002165|FUCA2	MSMS	A375_MHC_IP_R2	2	615.2050170898438	2	615.299101	1228.58365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.426	1	84.166	83.666	84.666	0.73962								0	0	0	0.14686	1	31708	31708		23.79	2.2528	1		+		62737	16080	45792	46148	61087	61087					-0.021498629930420066
YDSLTGLMTS	10	Unmodified	_YDSLTGLMTS_					0	0	0		nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3|COG4	nc|ENSG00000103051|Q9H9E3|COG4	MULTI-MSMS	A375_MHC_IP_R2	2	544.1947631835938	2	544.25244	1086.49033	-1.2122	-0.00065972	0.14153	7.7027E-05	-1.0706	-0.00058269	544.755136336153	59.445	0.45324	60.192	59.896	60.349	0.74714					13	8	2	0	0	0	0.6806	1	22436	22436		14.838	1.7958	1	796650			62738	2415	45793	46149	61088	61088					-0.049459234904816185
YDSSNPNDGI	10	Unmodified	_YDSSNPNDGI_					0	0	0			REV__nc|ENSG00000172915|Q8NFP9|NBEA	REV__nc|ENSG00000172915|Q8NFP9|NBEA	MULTI-MSMS	A375_MHC_IP_R2	2	541.1129760742188	2	541.225268	1080.43598	-0.89431	-0.00048402	-0.91824	-0.00049697	-1.8126	-0.000981	541.2246936132635	72.769	1.0175	73.505	73.175	74.192	0.73541					31	19	2	0	0	0	0.70496	2	27762	27762;27782		10.074	0.6908	1	4104500	+		62739	21180	45794	46150	61089;61090	61089					-0.1010179931768107
YDSWHSKSTDY	11	Unmodified	_YDSWHSKSTDY_					0	0	0		nc|ENSG00000150712|Q9C0I1-2|MTMR12;ENSG00000150712|ENST00000382142|MTMR12;nc|ENSG00000150712|Q9C0I1-3|MTMR12	nc|ENSG00000150712|Q9C0I1-2|MTMR12	nc|ENSG00000150712|Q9C0I1-2|MTMR12	MSMS	A375_MHC_IP_R2	2	694.7171020507812	2	694.791306	1387.56806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.063	1	48.824	48.324	49.324	0.76128								0	0	0	0.1624	1	18041	18041		6.2058	0.47393	1				62740	5858	45795	46151	61091	61091					-0.11022194300744559
YDTENFYFREI	11	Unmodified	_YDTENFYFREI_					0	0	0		nc|ENSG00000197608|Q6ZN19-2|ZNF841;nc|ENSG00000197608|Q6ZN19|ZNF841;ENSG00000197608|ENST00000594440|ZNF841	nc|ENSG00000197608|Q6ZN19-2|ZNF841	nc|ENSG00000197608|Q6ZN19-2|ZNF841	MSMS	A375_MHC_IP_R2	2	499.6346740722656	3	499.561263	1495.66196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.406	1	62.151	61.651	62.651	0.74503								0	0	0	0.16334	1	23273	23273		1.3296	0	1				62741	9179	45796	46152	61092	61092					-0.06604475198469117
YDTKKDRNLTF	11	Unmodified	_YDTKKDRNLTF_					0	0	0			REV__RBBP6|p.P1469L|1|0.17|ENSG00000122257|chr16:24571472-24571472|C/T|missense_variant	REV__RBBP6|p.P1469L|1|0.17|ENSG00000122257|chr16:24571472-24571472|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	467.9769592285156	3	467.577136	1399.70958	-0.20281	-9.4829E-05	-0.20393	-9.5354E-05	-0.40674	-0.00019018	467.57707360401747	50.062	0.6658	50.062	49.793	50.459	0					26	12	3	0	0	0	0.73502	1	17721	17721		4.1166	4.1166	1	6305000	+		62742	27872	45797	46153	61093	61093					0.025712237923698922
YDTKKDRNLTF	11	Unmodified	_YDTKKDRNLTF_					0	0	0			REV__RBBP6|p.P1469L|1|0.17|ENSG00000122257|chr16:24571472-24571472|C/T|missense_variant	REV__RBBP6|p.P1469L|1|0.17|ENSG00000122257|chr16:24571472-24571472|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	467.9769287109375	3	467.577136	1399.70958	-0.53762	-0.00025138	0.056399	2.6371E-05	-0.48122	-0.00022501	467.5772049895891	48.096	0.35178	48.858	48.682	49.034	0.76128					16	6	3	0	0	0	0.73195	1	18083	18083		7.0371	4.4058	1	4270000	+		62743	27872	45797	46153	61094	61094					0.025712237923698922
YDTSESDYY	9	Unmodified	_YDTSESDYY_					0	0	0		nc|ENSG00000211817|A0JD32|TRAV38-2DV8	nc|ENSG00000211817|A0JD32|TRAV38-2DV8	nc|ENSG00000211817|A0JD32|TRAV38-2DV8	MULTI-MSMS	A375_MHC_IP_R1	1	572.1898803710938	2	571.711659	1141.40876	-0.37824	-0.00021624	0.1981	0.00011325	-0.18014	-0.00010299	571.7116279767298	46.684	0.65788	46.684	46.345	47.003	0					29	12	4	0	0	0	0.55818	2	16444	16359;16444		16.942	9.0321	1	4797000			62744	14887	45798	46154	61095;61096	61096					-0.15628327648755658
YDTSESDYY	9	Unmodified	_YDTSESDYY_					0	0	0		nc|ENSG00000211817|A0JD32|TRAV38-2DV8	nc|ENSG00000211817|A0JD32|TRAV38-2DV8	nc|ENSG00000211817|A0JD32|TRAV38-2DV8	MULTI-MSMS	A375_MHC_IP_R2	2	572.1114501953125	2	571.711659	1141.40876	-0.20835	-0.00011912	0.24402	0.00013951	0.035674	2.0395E-05	571.7116027708996	46.072	0.60635	46.837	46.552	47.159	0.76519					28	11	3	0	0	0	0.098973	1	17227	17227		50.855	18.55	1	5156500			62745	14887	45798	46154	61097	61097					-0.15628327648755658
YDTSYFVEY	9	Unmodified	_YDTSYFVEY_					0	0	0		ENST00000504824.5_1_5:218488-235547:+|nuORF;nc|ENSG00000073578|P31040-2|SDHA;ENSG00000073578|ENST00000264932|SDHA;ENST00000505555.5_1_5:218470-251793:+|nuORF	ENST00000504824.5_1_5:218488-235547:+|nuORF	ENST00000504824.5_1_5:218488-235547:+|nuORF	MSMS	A375_MHC_IP_R1	1	593.7101440429688	2	593.750587	1185.48662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.384	1	35.384	34.884	35.884	0								0	0	0	0.1535	1	11766	11766		15.847	2.8047	1				62746	1564	45799	46155	61098	61098					-0.09870269992711656
YDVKNIKR	8	Unmodified	_YDVKNIKR_					0	0	0		ENSG00000183434|ENST00000310125|TFDP3	ENSG00000183434|ENST00000310125|TFDP3	ENSG00000183434|ENST00000310125|TFDP3	MULTI-MSMS	A375_MHC_IP_R1	1	518.7008666992188	2	518.300916	1034.58728	-0.90216	-0.00046759	0.31953	0.00016561	-0.58264	-0.00030198	518.3011533493247	29.792	0.34194	29.792	29.607	29.949	0					9	6	2	0	0	0	0.7773	1	9406	9406		4.756	0	1	6434300			62747	8494	45800	46156	61099	61099					0.07136851571476654
YDVPGPPL	8	Unmodified	_YDVPGPPL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	A375_MHC_IP_R1	1	429.291259765625	2	429.223811	856.433069	0.12867	5.5228E-05	-0.33235	-0.00014265	-0.20368	-8.7425E-05	429.2235479727548	44.333	0.41013	44.333	44.165	44.575	0					11	7	2	0	0	0	0.93416	1	15516	15516		20.871	15.641	1	1067200			62748	6151;14694	45801	46157	61100	61100					-0.0008897791390154453
YDVPGPPL	8	Unmodified	_YDVPGPPL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.V27689Efs*72|1|0.46|ENSG00000155657|chr2:178557273-178557274|-/CT|frameshift_variant;TTN|p.S27880Ifs*13|1|0.07|ENSG00000155657|chr2:178554898-178554899|-/TGAT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V22476Afs*16|1|0.21|ENSG00000155657|chr2:178573782-178573782|A/-|frameshift_variant;TTN|p.K22471Sfs*5|1|0.2|ENSG00000155657|chr2:178573784-178573797|ATTGAAAATGTGTT/-|frameshift_variant;TTN|p.N19023Tfs*24|1|0.27|ENSG00000155657|chr2:178589734-178589734|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	A375_MHC_IP_R2	2	429.2906494140625	2	429.223811	856.433069	-0.032744	-1.4055E-05	-0.26161	-0.00011229	-0.29435	-0.00012634	429.22357974553097	43.573	0.40336	44.345	44.13	44.533	0.7724					11	7	2	0	0	0	0.7479	1	16234	16234		20.871	6.2895	1	990760			62749	6151;14694	45801	46157	61101	61101					-0.0008897791390154453
YDYFWWERLWL	11	Unmodified	_YDYFWWERLWL_					0	0	0		ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MSMS	A375_MHC_IP_R2	2	559.6653442382812	3	559.601393	1675.78235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.575	1	91.31	90.81	91.81	0.7345								0	0	0	0.1635	1	34462	34462		0.50596	0.41111	1				62750	5388	45802	46158	61102	61102					-0.02851022414211002
YDYKFDFED	9	Unmodified	_YDYKFDFED_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;ENST00000360104.7_1_7:151833919-151834075:-|nuORF	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-MSMS	A375_MHC_IP_R1	1	622.10693359375	2	621.253494	1240.49243	-0.41063	-0.0002551	1.6939	0.0010523	1.2833	0.00079724	621.2537043673417	98.487	1.1675	98.487	98.05	99.218	0					41	22	3	0	0	0	0.6898	1	36351	36351		7.9102	2.1783	1	2998700			62751	1271	45803	46159	61103	61103					-0.11819171481033663
YEAIAHPSY	9	Unmodified	_YEAIAHPSY_					0	0	0			REV__tr|U7SGL7|U7SGL7_FUSNUD-lactatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02234PE=3SV=1	REV__tr|U7SGL7|U7SGL7_FUSNUD-lactatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02234PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	525.1474609375	2	525.748182	1049.48181	-0.36771	-0.00019332	1.5362	0.00080767	1.1685	0.00061435	525.7489750704909	71.069	0.86867	71.069	70.597	71.465	0					30	13	3	0	0	0	0.55818	1	25949	25949		16.942	0	1	7615100	+		62752	28187	45804	46160	61104	61104					-0.040951093448029496
YEALRSGHHPV	11	Unmodified	_YEALRSGHHPV_					0	0	0			REV__ENST00000607742.5_1_6:158532400-158537340:-|nuORF	REV__ENST00000607742.5_1_6:158532400-158537340:-|nuORF	MSMS	A375_MHC_IP_R2	2	633.3170776367188	2	633.322911	1264.63127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.33	1	142.36	141.86	142.86	0.030731								0	0	0	0.16258	1	55642	55642		5.2969	0.39987	1		+		62753	26552	45805	46161	61105	61105					0.009538359978023436
YEANMINEIIQ	11	Unmodified	_YEANMINEIIQ_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	A375_MHC_IP_R1	1	446.63336181640625	3	446.551711	1336.6333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.828	1	30.828	30.328	31.328	0								0	0	0	0.16291	1	9834	9834		3.5927	0.23695	1		+		62754	19932	45806	46162	61106	61106					-0.02154916099266302
YEAPRSVDW	9	Unmodified	_YEAPRSVDW_					0	0	0		nc|ENSG00000135047|P07711-3|CTSL;ENSG00000135047|ENST00000343150|CTSL	nc|ENSG00000135047|P07711-3|CTSL	nc|ENSG00000135047|P07711-3|CTSL	MSMS	A375_MHC_IP_R2	2	561.7263793945312	2	561.764363	1121.51417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.048	1	60.795	60.295	61.295	0.74714								0	0	0	0.15468	1	22726	22726		13.906	3.0821	1				62755	4637	45807	46163	61107	61107					-0.04172321941791779
YEAPSLATGY	10	Unmodified	_YEAPSLATGY_					0	0	0		ENSG00000159377|ENST00000290541|PSMB4;ENST00000474100.1_1_1:151372658-151373852:+|nuORF	ENSG00000159377|ENST00000290541|PSMB4	ENSG00000159377|ENST00000290541|PSMB4	MULTI-MSMS	A375_MHC_IP_R1	1	537.7623291015625	2	536.253297	1070.49204	-0.71434	-0.00038307	0.21127	0.00011329	-0.50308	-0.00026978	536.2533006159715	73.62	0.81049	73.62	73.336	74.146	0					46	15	4	0	0	0	0.55789	1	26820	26820		24.021	9.1823	1	13941000			62756	6369	45808	46164	61108	61108					-0.04038546410242816
YEAPSLATGY	10	Unmodified	_YEAPSLATGY_					0	0	0		ENSG00000159377|ENST00000290541|PSMB4;ENST00000474100.1_1_1:151372658-151373852:+|nuORF	ENSG00000159377|ENST00000290541|PSMB4	ENSG00000159377|ENST00000290541|PSMB4	MULTI-MSMS	A375_MHC_IP_R2	2	536.65283203125	2	536.253297	1070.49204	-0.86125	-0.00046185	0.49689	0.00026646	-0.36436	-0.00019539	536.253471092559	73.09	0.8131	73.826	73.328	74.141	0.73541					38	15	3	0	0	0	0.011296	1	27693	27693		123.45	64.772	1	17286000			62757	6369	45808	46164	61109	61109					-0.04038546410242816
YEAQQQYRQHI	11	Unmodified	_YEAQQQYRQHI_					0	0	0		ENST00000473311.5_1_3:183906074-183911483:+|nuORF;nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000468892.5_1_3:183907488-183910505:+|nuORF	ENST00000473311.5_1_3:183906074-183911483:+|nuORF	ENST00000473311.5_1_3:183906074-183911483:+|nuORF	MSMS	A375_MHC_IP_R2	2	488.666259765625	3	488.572385	1462.69533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.532	1	51.286	50.786	51.786	0.75406								0	0	0	0.16316	1	19005	19005		2.2527	0.79761	1				62758	6468	45809	46165	61110	61110					-0.017514286359073594
YEASDLTWE	9	Unmodified	_YEASDLTWE_					0	0	0		NPM2|p.E119K|1|0.4|ENSG00000158806|chr8:22033214-22033214|G/A|missense_variant;ENSG00000158806|ENST00000518119|NPM2	NPM2|p.E119K|1|0.4|ENSG00000158806|chr8:22033214-22033214|G/A|missense_variant	NPM2|p.E119K|1|0.4|ENSG00000158806|chr8:22033214-22033214|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	557.728515625	2	557.240386	1112.46622	-1.0939	-0.00060957	0.48574	0.00027068	-0.60817	-0.0003389	557.2406425537483	57.493	0.86703	58.242	57.711	58.578	0.74894					33	16	3	0	0	0	0.60101	3	21855	21846;21855;21863		14.838	10.824	1	4315100			62759	6333	45810	46166	61111;61112;61113	61112					-0.0855144065251352
YECAIQLGGF	10	Unmodified	_YECAIQLGGF_					0	0	0		OR8J3|p.T99I|1|0.15|ENSG00000167822|chr11:56137423-56137423|G/A|missense_variant	OR8J3|p.T99I|1|0.15|ENSG00000167822|chr11:56137423-56137423|G/A|missense_variant	OR8J3|p.T99I|1|0.15|ENSG00000167822|chr11:56137423-56137423|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	550.6746826171875	2	550.757692	1099.50083	-0.38717	-0.00021324	1.4422	0.00079429	1.055	0.00058105	551.2595208444202	78.972	0.76138	78.972	78.657	79.418	0					23	14	2	0	0	0	0.6806	1	28885	28885		14.838	0	1	1712700			62760	15097	45811	46167	61114	61114					-0.04493896045391921
YECPQCGKTF	10	Unmodified	_YECPQCGKTF_					0	0	0		ENSG00000176371|ENST00000546148|ZSCAN2	ENSG00000176371|ENST00000546148|ZSCAN2	ENSG00000176371|ENST00000546148|ZSCAN2	MULTI-SECPEP	A375_MHC_IP_R1	1	392.9003601074219	3	392.500182	1174.47872	0.14639	5.746E-05	0.27406	0.00010757	0.42045	0.00016503	392.5002915641932	31.512	0.35463	31.512	31.312	31.667	0					12	6	2	0	0	0	0.88918	1	10119	10119		7.9454	1.315	1	2205600			62761	8015	45812	46168	61115	61115					-0.1015444378549546
YECPQCGKTF	10	Unmodified	_YECPQCGKTF_					0	0	0		ENSG00000176371|ENST00000546148|ZSCAN2	ENSG00000176371|ENST00000546148|ZSCAN2	ENSG00000176371|ENST00000546148|ZSCAN2	MULTI-MATCH	A375_MHC_IP_R2	2		3	392.500182	1174.47872	-0.21615	-8.4837E-05	0.31822	0.0001249	0.10208	4.0066E-05	392.50039102572043	30.799	0.55492	31.518	31.266	31.821	0.71857	0.0027327	2.8968E-05	NaN	7.9454	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1795200			62762	8015	45812	46168							-0.1015444378549546
YECTMKYR	8	Unmodified	_YECTMKYR_					0	0	0			REV__ENSG00000136286|ENST00000258787|MYO1G	REV__ENSG00000136286|ENST00000258787|MYO1G	MULTI-MSMS	A375_MHC_IP_R1	1	547.6443481445312	2	547.243895	1092.47324	-0.54191	-0.00029656	0.44061	0.00024112	-0.1013	-5.5435E-05	547.2443252610192	73.665	0.96239	73.665	73.386	74.349	0					37	18	3	0	0	0	0.77028	1	26792	26792		14.838	0.93222	1	6631700	+		62763	18929	45813	46169	61116	61116					-0.0693012257729606
YECTMKYR	8	Unmodified	_YECTMKYR_					0	0	0			REV__ENSG00000136286|ENST00000258787|MYO1G	REV__ENSG00000136286|ENST00000258787|MYO1G	MULTI-SECPEP	A375_MHC_IP_R2	2	546.6897583007812	2	547.243895	1092.47324	-0.77541	-0.00042434	0.76755	0.00042004	-0.0078631	-4.303E-06	547.2444725873197	73.075	0.76339	73.81	73.53	74.294	0.73541					36	14	3	0	0	0	0.96266	1	27721	27721		16.942	16.942	1	5044300	+		62764	18929	45813	46169	61117	61117					-0.0693012257729606
YECYHSSGY	9	Unmodified	_YECYHSSGY_					0	0	0			REV__nc|ENSG00000049192|Q9UKP5-2|ADAMTS6	REV__nc|ENSG00000049192|Q9UKP5-2|ADAMTS6	MSMS	A375_MHC_IP_R2	2	554.640380859375	2	554.705657	1107.39676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.811	1	67.547	67.047	68.047	0.73631								0	0	0	0.15486	1	25311	25311		7.2892	0.56607	1		+		62765	27102	45814	46170	61118	61118					-0.1526422287290643
YEDDDDDD	8	Unmodified	_YEDDDDDD_					0	0	0			REV__nc|ENSG00000281106|A0A1B0GTI8-2|TMEM272	REV__nc|ENSG00000281106|A0A1B0GTI8-2|TMEM272	MSMS	A375_MHC_IP_R1	1	501.17822265625	2	501.146349	1000.27814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.116	1	84.116	83.616	84.616	0								0	0	0	0.16876	1	30802	30802		0	0	1		+		62766	22991	45815	46171	61119	61119					-0.22198343367608686
YEDGSIRIF	9	Unmodified	_YEDGSIRIF_					0	0	0		ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6737670898438	2	550.274564	1098.53457	-0.73013	-0.00040177	0.11353	6.2474E-05	-0.6166	-0.0003393	550.2746302340231	78.516	0.60938	79.261	78.931	79.54	0.74474					41	11	4	0	0	0	0.062502	1	29764	29764		83.429	56.545	1	58268000			62767	1371	45816	46172	61120	61120					-0.010751512820206699
YEDNSVYELN	10	Unmodified	_YEDNSVYELN_					0	0	0			REV__tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	REV__tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	MSMS	A375_MHC_IP_R1	1	623.2218627929688	2	623.267133	1244.51971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.272	1	66.272	65.772	66.772	0								0	0	0	0.14983	1	23994	23994		18.146	1.0335	1		+		62768	28647	45817	46173	61121	61121					-0.09276687940632655
YEDPHYVTF	9	Unmodified	_YEDPHYVTF_					0	0	0		ZAN|p.G1160E|1|0.61|ENSG00000146839|chr7:100758558-100758558|G/A|missense_variant	ZAN|p.G1160E|1|0.61|ENSG00000146839|chr7:100758558-100758558|G/A|missense_variant	ZAN|p.G1160E|1|0.61|ENSG00000146839|chr7:100758558-100758558|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	586.724365234375	2	585.758746	1169.50294	-0.57558	-0.00033715	-0.39299	-0.0002302	-0.96857	-0.00056735	585.7584757387017	40.289	0.55798	41.064	40.727	41.285	0.77451					25	10	3	0	0	0	0.63811	1	14809	14809		12.532	1.7076	1	8821900			62769	30176	45818	46174	61122	61122					-0.07503144035968035
YEDQVGKFDW	10	Unmodified	_YEDQVGKFDW_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	A375_MHC_IP_R2	2	644.258544921875	2	643.788035	1285.56152	-0.70096	-0.00045127	0.20268	0.00013048	-0.49828	-0.00032079	643.7880691349652	76.659	0.40558	77.4	77.199	77.604	0.74052					13	7	2	0	0	0	0.10407	1	29143	29143		62.78	42.366	1	1348700			62770	4092	45819	46175	61123	61123					-0.06984087461455601
YEDVARDTN	9	Unmodified	_YEDVARDTN_					0	0	0		nc|ENSG00000134014|Q9H9T3-5|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;ENSG00000134014|ENST00000256398|ELP3;nc|ENSG00000134014|Q9H9T3-4|ELP3	nc|ENSG00000134014|Q9H9T3-5|ELP3	nc|ENSG00000134014|Q9H9T3-5|ELP3	MULTI-MSMS	A375_MHC_IP_R2	2	541.6798095703125	2	541.741085	1081.46762	-0.8514	-0.00046124	-1.9775	-0.0010713	-2.8289	-0.0015325	541.7397790261116	31.698	0.30453	32.435	32.3	32.605	0.73691					7	5	2	0	0	0	0.6324	1	11280	11280		13.042	2.2185	1	1165000			62771	4542	45820	46176	61124	61124					-0.06985806563739061
YEEAVRDY	8	Unmodified	_YEEAVRDY_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-MSMS	A375_MHC_IP_R2	2	523.1895751953125	2	522.735271	1043.45599	-0.50705	-0.00026505	-0.45323	-0.00023692	-0.96028	-0.00050197	522.7349985766223	70.132	0.71133	70.866	70.488	71.2	0.73421					24	13	2	0	0	0	0.7256	1	26594	26594		26.884	0.54238	1	2016000			62772	7279	45821	46177	61125	61125					-0.06400003587077663
YEEEDGDG	8	Unmodified	_YEEEDGDG_					0	0	0			REV__ENSG00000139266|ENST00000266643|MARCHF9	REV__ENSG00000139266|ENST00000266643|MARCHF9	MSMS	A375_MHC_IP_R2	2	457.1253662109375	2	457.156519	912.298486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.773	1	18.369	17.869	18.869	0.59616								0	0	0	0.16876	1	5246	5246		0	0	1		+		62773	19144	45822	46178	61126	61126					-0.16117127917118523
YEEEKKTPWQR	11	Unmodified	_YEEEKKTPWQR_					0	0	0			REV__ENST00000306107.9_3_3:105085858-105238971:+|nuORF	REV__ENST00000306107.9_3_3:105085858-105238971:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	498.96795654296875	3	498.584291	1492.73104	-0.84572	-0.00042166	-0.27365	-0.00013644	-1.1194	-0.0005581	498.9184751979944	20.027	0.40453	20.637	20.399	20.803	0.61029					17	7	3	0	0	0	0.73605	1	6250	6250		3.134	2.0242	1	1842700	+		62774	23465	45823	46179	61127	61127					0.004386088210821981
YEEEKKTPWQR	11	Unmodified	_YEEEKKTPWQR_					0	0	0			REV__ENST00000306107.9_3_3:105085858-105238971:+|nuORF	REV__ENST00000306107.9_3_3:105085858-105238971:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	499.3181457519531	3	498.584291	1492.73104	-0.84572	-0.00042166	-0.27365	-0.00013644	-1.1194	-0.0005581	498.9184751979944	20.027	0.40453	20.637	20.399	20.803	0.61029					17	7	3	0	0	0	0.99711	1	6210	6210		7.4291	3.5832	1	1842700	+		62775	23465	45823	46179	61128	61128					0.004386088210821981
YEENHTNQP	9	Unmodified	_YEENHTNQP_					0	0	0		ENSG00000139517|ENST00000316334|LNX2	ENSG00000139517|ENST00000316334|LNX2	ENSG00000139517|ENST00000316334|LNX2	MSMS	A375_MHC_IP_R1	1	566.1714477539062	2	566.238709	1130.46287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.493	1	40.493	39.993	40.993	0								0	0	0	0.1535	1	13918	13918		15.847	7.2539	1				62776	5083	45824	46180	61129	61129					-0.09714690706528017
YEEQGKPEV	9	Unmodified	_YEEQGKPEV_					0	0	0		nc|ENSG00000107949|Q9P287-4|BCCIP;nc|ENSG00000107949|Q9P287-2|BCCIP	nc|ENSG00000107949|Q9P287-4|BCCIP	nc|ENSG00000107949|Q9P287-4|BCCIP	MULTI-SECPEP	A375_MHC_IP_R1	1	539.0284423828125	2	539.756204	1077.49785	-0.50729	-0.00027381	-0.12436	-6.7124E-05	-0.63165	-0.00034093	540.2576309629442	70.267	0.46181	70.267	70.135	70.597	0					11	8	2	0	0	0	0.69507	1	25487	25487		9.3831	0	1	1564600			62777	14532	45825	46181	61130	61130					-0.03779447898568833
YEERRKYY	8	Unmodified	_YEERRKYY_					0	0	0		tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	MSMS	A375_MHC_IP_R1	1	603.6968994140625	2	603.798737	1205.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.823	1	21.823	21.323	22.323	0								0	0	0	0.16876	1	5789	5789		19.439	1.304	1				62778	29500	45826	46182	61131	61131					-0.011646576420844212
YEERSNYHGP	10	Unmodified	_YEERSNYHGP_					0	0	0		ENST00000249364.8_1_7:128379460-128388729:+|nuORF	ENST00000249364.8_1_7:128379460-128388729:+|nuORF	ENST00000249364.8_1_7:128379460-128388729:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	417.6126403808594	3	417.851148	1250.53161	-0.33259	-0.00013897	-0.34289	-0.00014327	-0.67548	-0.00028225	417.85102195818286	19.238	0.40378	19.841	19.633	20.037	0.60308					16	7	3	0	0	0	0.92957	1	5814	5814		5.7834	0.48655	1	2661900			62779	10197	45827	46183	61132	61132					-0.08363026406823337
YEESQSRLNQI	11	Unmodified	_YEESQSRLNQI_					0	0	0		nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-MSMS	A375_MHC_IP_R1	1	457.256591796875	3	456.224762	1365.65246	-0.29159	-0.00013303	-0.0133	-6.0677E-06	-0.30489	-0.0001391	456.22464580777006	34.573	0.30288	34.573	34.405	34.708	0					13	5	4	0	0	0	0.73472	1	11373	11373		4.4062	0.81348	1	1684000			62780	14445	45828	46184	61133	61133					-0.01574243483992177
YEESQSRLNQI	11	Unmodified	_YEESQSRLNQI_					0	0	0		nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-MATCH	A375_MHC_IP_R2	2		3	456.224762	1365.65246	-0.71614	-0.00032672	0.42445	0.00019365	-0.29169	-0.00013308	456.55934375668716	33.925	0.35316	34.677	34.45	34.803	0.75225	0.051817	0.00016892	NaN	4.4062	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1880900			62781	14445	45828	46184							-0.01574243483992177
YEEWARYGVFY	11	Unmodified	_YEEWARYGVFY_					0	0	0		nc|ENSG00000131620|Q5XXA6-4|ANO1;nc|ENSG00000131620|Q5XXA6-3|ANO1;nc|ENSG00000131620|Q5XXA6-2|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1	nc|ENSG00000131620|Q5XXA6-4|ANO1	nc|ENSG00000131620|Q5XXA6-4|ANO1	MULTI-MSMS	A375_MHC_IP_R2	2	495.29400634765625	3	494.894465	1481.66157	-0.43253	-0.00021405	-0.47783	-0.00023648	-0.91036	-0.00045053	494.89414645120615	46.015	0.85565	46.78	46.303	47.159	0.76519					40	16	3	0	0	0	0.73658	1	17156	17156		2.6312	0.19645	1	5340800			62782	14603	45829	46185	61134	61134					-0.059998501276822935
YEEYKKKY	8	Unmodified	_YEEYKKKY_					0	0	0		ENSG00000144668|ENST00000264741|ITGA9	ENSG00000144668|ENST00000264741|ITGA9	ENSG00000144668|ENST00000264741|ITGA9	MULTI-SECPEP	A375_MHC_IP_R2	2	383.9189453125	3	384.197485	1149.57063	-0.44034	-0.00016918	-1.6722	-0.00064247	-2.1126	-0.00081164	384.19659400786554	37.47	0.61249	38.241	38.02	38.632	0.7709					14	11	2	0	0	0	0.97144	1	13679	13679		10.824	6.4178	1	837130			62783	5504	45830	46186	61135	61135					0.0018230589485028759
YEEYLRDY	8	Unmodified	_YEEYLRDY_					0	0	0			REV__ENST00000520550.1_1_5:67588878-67591317:+|nuORF	REV__ENST00000520550.1_1_5:67588878-67591317:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	576.2318725585938	2	575.756204	1149.49785	-0.56215	-0.00032366	0.37868	0.00021803	-0.18347	-0.00010563	575.7562460331852	38.372	0.40456	39.147	38.946	39.351	0.77451					19	7	4	0	0	0	0.77583	1	14034	14034		10.074	0.72649	1	5909400	+		62784	25701	45831	46187	61136	61136					-0.0709144789855145
YEFDEQGHSTW	11	Unmodified	_YEFDEQGHSTW_					0	0	0		ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	MULTI-MSMS	A375_MHC_IP_R1	1	700.1837768554688	2	699.783481	1397.55241	-0.64267	-0.00044973	0.5554	0.00038866	-0.087266	-6.1067E-05	699.7839157568673	61.022	0.50788	61.022	60.719	61.227	0					19	9	3	0	0	0	0.00035842	1	21967	21967		115.06	94.645	1	2794700			62785	6722	45832	46188	61137	61137					-0.130464808177976
YEFDEQGHSTW	11	Unmodified	_YEFDEQGHSTW_					0	0	0		ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	MULTI-MSMS	A375_MHC_IP_R2	2	700.6834716796875	2	699.783481	1397.55241	-1.0061	-0.00070403	0.069839	4.8872E-05	-0.93624	-0.00065516	699.7835878510948	60.441	0.50951	61.186	60.955	61.464	0.74503					17	9	3	0	0	0	0.45155	1	22896	22896		34.932	28.726	1	3216600			62786	6722	45832	46188	61138	61138					-0.130464808177976
YEFFNEQKY	9	Unmodified	_YEFFNEQKY_					0	0	0		ENSG00000185989|ENST00000334062|RASA3;nc|ENSG00000185989|Q14644-2|RASA3	ENSG00000185989|ENST00000334062|RASA3	ENSG00000185989|ENST00000334062|RASA3	MULTI-MSMS	A375_MHC_IP_R1	1	634.6845092773438	2	634.285128	1266.5557	-0.99807	-0.00063306	1.0348	0.00065633	0.036689	2.3272E-05	634.2851935519651	67.453	0.51056	67.453	67.194	67.704	0					13	9	2	0	0	0	0.062639	1	24478	24478		59.368	33.969	1	1640500			62787	8714	45833	46189	61139	61139					-0.06691185973136271
YEFFNEQKY	9	Unmodified	_YEFFNEQKY_					0	0	0		ENSG00000185989|ENST00000334062|RASA3;nc|ENSG00000185989|Q14644-2|RASA3	ENSG00000185989|ENST00000334062|RASA3	ENSG00000185989|ENST00000334062|RASA3	MULTI-SECPEP	A375_MHC_IP_R2	2	634.6842041015625	2	634.285128	1266.5557	-0.87167	-0.00055288	0.33684	0.00021365	-0.53483	-0.00033923	634.2850643614399	66.865	0.40839	67.601	67.342	67.75	0.73631					10	7	2	0	0	0	0.23894	1	25334	25334		55.503	41.597	1	1951700			62788	8714	45833	46189	61140	61140					-0.06691185973136271
YEFGQGEV	8	Unmodified	_YEFGQGEV_					0	0	0			REV__ENSG00000196407|ENST00000368817|THEM5	REV__ENSG00000196407|ENST00000368817|THEM5	MULTI-MSMS	A375_MHC_IP_R1	1	465.10711669921875	2	464.705983	927.397412	-0.24554	-0.0001141	1.3856	0.00064391	1.1401	0.00052981	464.70697135486836	95.998	0.91193	95.998	95.515	96.427	0					27	17	2	0	0	0	0.73946	1	35287	35287		23.148	0	1	2112700	+		62789	22192	45834	46190	61141	61141					-0.0691906016155599
YEFLKDASD	9	Unmodified	_YEFLKDASD_					0	0	0		ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2	ENSG00000118412|ENST00000551025|CASP8AP2	ENSG00000118412|ENST00000551025|CASP8AP2	MULTI-SECPEP	A375_MHC_IP_R2	2	363.2923278808594	3	363.169595	1086.48696	-0.1371	-4.9792E-05	0.95938	0.00034842	0.82228	0.00029863	363.16982414008953	32.518	0.35636	33.255	33.061	33.417	0.73691					11	6	2	0	0	0	0.79191	1	11616	11616		4.1895	0	1	1790700			62790	3541	45835	46191	61142	61142					-0.05282850272851647
YEFSYSSSL	9	Unmodified	_YEFSYSSSL_					0	0	0		DOK6|p.G322E|1|0.15|ENSG00000206052|chr18:69841352-69841352|G/A|missense_variant	DOK6|p.G322E|1|0.15|ENSG00000206052|chr18:69841352-69841352|G/A|missense_variant	DOK6|p.G322E|1|0.15|ENSG00000206052|chr18:69841352-69841352|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	541.5015869140625	2	541.73748	1081.46041	-0.73517	-0.00039827	-0.0082075	-4.4463E-06	-0.74338	-0.00040272	541.7375836128158	79.542	0.5599	80.287	79.997	80.556	0.74473					15	10	2	0	0	0	0.75466	1	30256	30256		12.532	0.89125	1	1599200			62791	786	45836	46192	61143	61143					-0.07706539164178139
YEFVNSGVGDF	11	Unmodified	_YEFVNSGVGDF_					0	0	0		ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3;IRF3|p.G225Afs*28|1|0.26|ENSG00000126456|chr19:49662256-49662256|C/-|frameshift_variant;nc|ENSG00000126456|Q14653-2|IRF3	ENSG00000126456|ENST00000377139|IRF3	ENSG00000126456|ENST00000377139|IRF3	MULTI-SECPEP	A375_MHC_IP_R2	2	617.4859008789062	2	617.274761	1232.53497	-0.44101	-0.00027223	1.6171	0.00099819	1.1761	0.00072597	617.2774442642294	100.19	0.30629	100.96	100.83	101.13	0.76278					6	5	2	0	0	0	0.99331	1	38059	38059		8.7454	7.4159	1	1457500			62792	4042	45837	46193	61144	61144					-0.07199776352786103
YEGEAHPY	8	Unmodified	_YEGEAHPY_					0	0	0		ENSG00000091536|ENST00000647165|MYO15A;MYO15A|p.D330N|1|0.52|ENSG00000091536|chr17:18119788-18119788|G/A|missense_variant	ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	MULTI-MSMS	A375_MHC_IP_R1	1	483.6034851074219	2	483.203607	964.392661	-0.45113	-0.00021799	-0.021308	-1.0296E-05	-0.47243	-0.00022828	483.2035529572904	27.613	0.55507	27.613	27.432	27.987	0					30	10	4	0	0	0	0.70843	1	8406	8406		32.117	0	1	29577000			62793	1982	45838	46194	61145	61145					-0.09095944304340264
YEGHDKKSL	9	Unmodified	_YEGHDKKSL_					0	0	0			REV__ENSG00000036448|ENST00000262113|MYOM2	REV__ENSG00000036448|ENST00000262113|MYOM2	MULTI-MSMS	A375_MHC_IP_R1	1	539.1719970703125	2	538.772188	1075.52982	-0.61067	-0.00032901	-0.69816	-0.00037615	-1.3088	-0.00070516	538.7720569467695	55.654	1.982	55.654	54.873	56.855	0					101	38	4	0	0	0	0.13797	2	19936	19936;20242		43.858	7.7313	1	12232000	+		62794	16319	45839	46195	61146;61147	61146					-0.004920354247587966
YEGHDKKSL	9	Unmodified	_YEGHDKKSL_					0	0	0			REV__ENSG00000036448|ENST00000262113|MYOM2	REV__ENSG00000036448|ENST00000262113|MYOM2	MULTI-SECPEP	A375_MHC_IP_R1	1	539.1719970703125	2	538.772188	1075.52982	-0.61067	-0.00032901	-0.69816	-0.00037615	-1.3088	-0.00070516	538.7720569467695	55.654	1.982	55.654	54.873	56.855	0					101	38	4	0	0	0	0.35487	1	19936	19936		43.858	43.858	1	12232000	+		62795	16319	45839	46195	61148	61148					-0.004920354247587966
YEGYQTSSPLY	11	Unmodified	_YEGYQTSSPLY_					0	0	0			REV__ENST00000257979.4_1_12:56844558-56844876:-|nuORF	REV__ENST00000257979.4_1_12:56844558-56844876:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	436.689453125	3	436.531192	1306.57175	-0.33595	-0.00014665	0.81981	0.00035787	0.48386	0.00021122	436.5314825961652	32.629	0.55897	33.366	33.061	33.62	0.73691					23	10	3	0	0	0	0.9881	1	11583	11583		7.846	3.6565	1	3264600	+		62796	23164	45840	46196	61149	61149					-0.0692752452687273
YEHASIHLW	9	Unmodified	_YEHASIHLW_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-SECPEP	A375_MHC_IP_R2	2	386.2574768066406	3	385.857574	1154.55089	-0.49855	-0.00019237	0.34988	0.000135	-0.14867	-5.7367E-05	385.85765391089217	59.754	0.45556	60.501	60.198	60.653	0.74714					12	8	2	0	0	0	0.58271	1	22641	22641		19.362	10.386	1	2032100			62797	4678	45841	46197	61150	61150					-0.020200253252369293
YEHASIHLW	9	Unmodified	_YEHASIHLW_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-MATCH	A375_MHC_IP_R1	1		3	385.857574	1154.55089	0.23874	9.212E-05	-0.023783	-9.1768E-06	0.21496	8.2943E-05	385.85743349142217	60.596	0.35643	60.596	60.414	60.77	0	0.047643	-0.00023531	NaN	19.362	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1871600			62798	4678	45841	46197							-0.020200253252369293
YEHLFPEL	8	Unmodified	_YEHLFPEL_					0	0	0		nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1	nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MSMS	A375_MHC_IP_R1	1	524.1795654296875	2	524.260925	1046.5073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.32	1	133.32	132.82	133.82	0								0	0	0	0.16876	1	51411	51411		14.582	0	1				62799	4639	45842	46198	61151	61151					-0.014096348223802124
YEILATHPTW	10	Unmodified	_YEILATHPTW_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;NOMO1|p.Q465Kfs*4|1|0.07|ENSG00000103512|chr16:14863184-14863185|-/AAGAC|frameshift_variant	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-SECPEP	A375_MHC_IP_R1	1	616.2109985351562	2	615.811313	1229.60807	-0.54348	-0.00033468	-0.18798	-0.00011576	-0.73146	-0.00045044	615.8111624480631	84.714	0.51332	84.714	84.442	84.955	0					21	9	3	0	0	0	0.018275	1	31044	31044		110.67	81.593	1	4116600			62800	2432	45843	46199	61152	61152					0.002453971604609251
YEILATHPTW	10	Unmodified	_YEILATHPTW_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;NOMO1|p.Q465Kfs*4|1|0.07|ENSG00000103512|chr16:14863184-14863185|-/AAGAC|frameshift_variant	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-SECPEP	A375_MHC_IP_R2	2	616.2109375	2	615.811313	1229.60807	-0.55603	-0.00034241	0.13211	8.1357E-05	-0.42392	-0.00026105	615.8113206417764	83.971	0.76793	84.71	84.407	85.175	0.73962					29	14	4	0	0	0	0.018275	1	31936	31936		122.18	86.052	1	4103300			62801	2432	45843	46199	61153	61153					0.002453971604609251
YEIPSVWESD	10	Unmodified	_YEIPSVWESD_					0	0	0		FCRL1|p.R174W|1|0.46|ENSG00000163534|chr1:157802464-157802464|T/A|missense_variant	FCRL1|p.R174W|1|0.46|ENSG00000163534|chr1:157802464-157802464|T/A|missense_variant	FCRL1|p.R174W|1|0.46|ENSG00000163534|chr1:157802464-157802464|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	613.1741333007812	2	612.774593	1223.53463	-0.86238	-0.00052844	-0.46118	-0.0002826	-1.3236	-0.00081104	612.7742707839745	61.652	0.55392	62.398	62.07	62.624	0.74503					17	10	2	0	0	0	0.55789	1	23333	23333		24.021	5.8742	1	3143000			62802	13991	45844	46200	61154	61154					-0.06819196072660816
YEKKHQENF	9	Unmodified	_YEKKHQENF_					0	0	0		tr|U7SS49|U7SS49_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01543PE=3SV=1	tr|U7SS49|U7SS49_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01543PE=3SV=1	tr|U7SS49|U7SS49_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01543PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	408.4330139160156	3	408.199889	1221.57784	-0.46299	-0.00018899	0.34443	0.0001406	-0.11856	-4.8395E-05	408.1998863110284	26.57	1.3641	26.57	26.118	27.482	0					28	26	2	0	0	0	0.72985	1	8261	8261		2.4985	0	1	3252800			62803	29625	45845	46201	61155	61155					-0.024089615047159896
YEKQLEDF	8	Unmodified	_YEKQLEDF_					0	0	0			REV__tr|U7T0T9|U7T0T9_FUSNUOsmoprotectanttransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00647PE=3SV=1	REV__tr|U7T0T9|U7T0T9_FUSNUOsmoprotectanttransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00647PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	535.6644897460938	2	536.253297	1070.49204	-0.49665	-0.00026633	-2.703	-0.0014495	-3.1997	-0.0017158	536.752871354661	54.088	0.40385	54.088	53.809	54.213	0					10	7	2	0	0	0	0.94587	1	19333	19333		14.838	0	1	1334400	+		62804	28682	45846	46202	61156	61156					-0.04038546410242816
YEKSAAESIGE	11	Unmodified	_YEKSAAESIGE_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-MSMS	A375_MHC_IP_R2	2	592.6904296875	2	592.2775	1182.54045	-0.48133	-0.00028508	-1.4046	-0.0008319	-1.8859	-0.001117	592.2765865683253	89.348	0.71091	90.08	89.886	90.597	0.7318					19	13	2	0	0	0	0.66366	1	34186	34186		18.373	1.4308	1	2306700	+		62805	18059	45847	46203	61157	61157					-0.04352097561013579
YEKYRKSH	8	Unmodified	_YEKYRKSH_					0	0	0		tr|U7T5G4|U7T5G4_FUSNUFormateacetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00052PE=3SV=1	tr|U7T5G4|U7T5G4_FUSNUFormateacetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00052PE=3SV=1	tr|U7T5G4|U7T5G4_FUSNUFormateacetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00052PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	371.6274719238281	3	370.861207	1109.56179	0.079042	2.9313E-05	-0.26769	-9.9277E-05	-0.18865	-6.9964E-05	370.8611176470476	56.332	0.40779	57.082	56.847	57.255	0.75014					18	7	3	0	0	0	0.77797	1	21274	21274		1.4819	0.41044	1	1146400			62806	30021	45848	46204	61158	61158					0.011393770490485622
YELDEESRRKY	11	Unmodified	_YELDEESRRKY_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	A375_MHC_IP_R1	1	496.92498779296875	3	496.575684	1486.70522	-0.68833	-0.00034181	0.10652	5.2897E-05	-0.58181	-0.00028891	496.5757053023058	23.508	0.50843	23.508	23.381	23.889	0					11	9	2	0	0	0	0.72577	1	6431	6431		12.929	4.6423	1	18487000			62807	1462	45849	46205	61159	61159					-0.01866285421192515
YELDEESRRKY	11	Unmodified	_YELDEESRRKY_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	A375_MHC_IP_R2	2	497.30859375	3	496.575684	1486.70522	-0.81547	-0.00040494	0.16311	8.0999E-05	-0.65235	-0.00032394	496.5756764160405	21.675	0.71457	22.294	21.928	22.643	0.61932					34	13	4	0	0	0	0.36714	1	6825	6825		41.567	29.935	1	8179300			62808	1462	45849	46205	61160	61160					-0.01866285421192515
YELDEESRRKY	11	Unmodified	_YELDEESRRKY_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-SECPEP	A375_MHC_IP_R2	2	497.3094482421875	3	496.575684	1486.70522	-0.78059	-0.00038762	-0.13842	-6.8738E-05	-0.91902	-0.00045636	496.57572335836556	23.35	0.20086	23.98	23.878	24.079	0.63014					6	3	2	0	0	0	0.92891	1	7518	7518		21.666	13.38	1	5345200			62809	1462	45849	46205	61161	61161					-0.01866285421192515
YELLNGQSVF	10	Unmodified	_YELLNGQSVF_					0	0	0		nc|ENSG00000184226|Q9HC56-2|PCDH9;ENSG00000184226|ENST00000377865|PCDH9	nc|ENSG00000184226|Q9HC56-2|PCDH9	nc|ENSG00000184226|Q9HC56-2|PCDH9	MULTI-MSMS	A375_MHC_IP_R1	1	585.6949462890625	2	585.295496	1168.57644	-0.25372	-0.0001485	0.43676	0.00025564	0.18304	0.00010713	585.296071461277	74.968	0.70921	74.968	74.704	75.413	0					25	13	3	0	0	0	0.59108	1	27356	27356		21.537	4.4241	1	1896300			62810	8564	45850	46206	61162	61162					-0.001105955934690428
YELPTNTQW	9	Unmodified	_YELPTNTQW_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	A375_MHC_IP_R1	1	576.6716918945312	2	576.272021	1150.52949	0.039628	2.2837E-05	-0.12679	-7.3066E-05	-0.087162	-5.0229E-05	576.2720302404408	93.006	0.6101	93.006	92.617	93.228	0					20	11	3	0	0	0	0.13845	1	34203	34203		43.772	21.036	1	2094500			62811	5020	45851	46207	61163	61163					-0.03975455144609441
YELPTNTQW	9	Unmodified	_YELPTNTQW_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-SECPEP	A375_MHC_IP_R2	2	576.6719360351562	2	576.272021	1150.52949	-0.094569	-5.4498E-05	0.029543	1.7025E-05	-0.065026	-3.7473E-05	576.271835958159	92.398	0.40437	93.137	92.886	93.291	0.73902					14	7	2	0	0	0	0.11711	1	35135	35135		69.105	47.568	1	2170900			62812	5020	45851	46207	61164	61164					-0.03975455144609441
YEMCFTLF	8	Unmodified	_YEMCFTLF_					0	0	0			REV__ENSG00000188419|ENST00000357749|CHM	REV__ENSG00000188419|ENST00000357749|CHM	MSMS	A375_MHC_IP_R2	2	527.2103881835938	2	527.224639	1052.43473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.7	1	106.45	105.95	106.95	0.75977								0	0	0	0.16876	1	39970	39970		10.183	3.8293	1		+		62813	22091	45852	46208	61165	61165					-0.08939428211829181
YEMEIFDY	8	Unmodified	_YEMEIFDY_					0	0	0		ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2	ENSG00000134516|ENST00000520908|DOCK2	MULTI-MSMS	A375_MHC_IP_R2	2	555.62646484375	2	555.228433	1108.44231	-0.77265	-0.00042899	-2.2434	-0.0012456	-3.0161	-0.0016746	555.2270060890455	73.065	0.61101	73.8	73.581	74.192	0.73541					15	11	2	0	0	0	0.70843	1	27750	27750		32.117	3.0354	1	1599800			62814	4583	45853	46209	61166	61166					-0.107569974105445
YEMEVSQRL	9	Oxidation (M)	_YEM(Oxidation (M))EVSQRL_		YEM(1)EVSQRL		YEM(78)EVSQRL	0	0	1		ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2	ENSG00000102910|ENST00000285737|LONP2	ENSG00000102910|ENST00000285737|LONP2	MULTI-MSMS	A375_MHC_IP_R1	1	586.1766967773438	2	585.776613	1169.53867	-0.4809	-0.0002817	0.047841	2.8024E-05	-0.43306	-0.00025367	585.7766952672915	32.766	0.70561	32.766	32.485	33.19	0					20	13	2	0	0	0	0.026372	1	10619	10619		78.06	48.979	1	5466300			62815	2402	45854	46210	61167	61167		106			-0.03931429850604218
YEMEVSQRL	9	Oxidation (M)	_YEM(Oxidation (M))EVSQRL_		YEM(1)EVSQRL		YEM(97)EVSQRL	0	0	1		ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2	ENSG00000102910|ENST00000285737|LONP2	ENSG00000102910|ENST00000285737|LONP2	MULTI-MSMS	A375_MHC_IP_R2	2	586.1763916015625	2	585.776613	1169.53867	-0.52963	-0.00031024	-0.13903	-8.144E-05	-0.66866	-0.00039168	585.7766321740218	32.091	0.55693	32.828	32.555	33.112	0.73691					24	10	3	0	0	0	0.0095341	1	11369	11369		96.936	49.187	1	4571900			62816	2402	45854	46210	61168	61168		106			-0.03931429850604218
YEMEVSQRL	9	Unmodified	_YEMEVSQRL_					0	0	0		ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2	ENSG00000102910|ENST00000285737|LONP2	ENSG00000102910|ENST00000285737|LONP2	MULTI-SECPEP	A375_MHC_IP_R1	1	578.1788940429688	2	577.779156	1153.54376	-0.0099083	-5.7248E-06	-0.11287	-6.5213E-05	-0.12278	-7.0938E-05	577.7789734510303	51.734	0.45747	51.734	51.525	51.982	0					14	8	2	0	0	0	0.076731	1	18370	18370		80.676	49.408	1	5788800			62817	2402	45854	46211	61169	61169					-0.026871259879726495
YEMEVSQRL	9	Unmodified	_YEMEVSQRL_					0	0	0		ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2	ENSG00000102910|ENST00000285737|LONP2	ENSG00000102910|ENST00000285737|LONP2	MULTI-SECPEP	A375_MHC_IP_R2	2	577.1705322265625	2	577.779156	1153.54376	-0.30911	-0.0001786	-0.36657	-0.0002118	-0.67568	-0.00039039	577.7788471327493	51.136	0.50571	51.89	51.665	52.17	0.75406					16	9	2	0	0	0	0.076731	1	19254	19254		71.708	42.626	1	5935000			62818	2402	45854	46211	61170	61170					-0.026871259879726495
YENFDSVTL	9	Unmodified	_YENFDSVTL_					0	0	0		tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	MSMS	A375_MHC_IP_R1	1	544.2107543945312	2	544.250754	1086.48696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.064	1	80.064	79.564	80.564	0								0	0	0	0.15486	1	29230	29230		12.532	0	1				62819	30038	45855	46212	61171	61171					-0.05282850272851647
YENGIRQGK	9	Unmodified	_YENGIRQGK_					0	0	0		tr|U7T4Z9|U7T4Z9_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00618PE=4SV=1	tr|U7T4Z9|U7T4Z9_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00618PE=4SV=1	tr|U7T4Z9|U7T4Z9_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00618PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	532.6669311523438	2	532.777805	1063.54106	-1.1642	-0.00062025	0.24014	0.00012794	-0.92404	-0.00049231	532.7778357247903	34.025	0.3544	34.778	34.55	34.904	0.75225					10	6	2	0	0	0	0.63327	1	12166	12166		24.021	1.2843	1	4342100			62820	30007	45856	46213	61172	61172					0.011827866693693068
YENIIVHTY	9	Unmodified	_YENIIVHTY_					0	0	0		nc|ENSG00000203965|A8K855-2|EFCAB7;ENSG00000203965|ENST00000371088|EFCAB7;ENST00000461039.1_1_1:64021028-64034235:+|nuORF	nc|ENSG00000203965|A8K855-2|EFCAB7	nc|ENSG00000203965|A8K855-2|EFCAB7	MULTI-SECPEP	A375_MHC_IP_R2	2	576.6895141601562	2	576.290214	1150.56587	-0.49979	-0.00028802	-0.67673	-0.00038999	-1.1765	-0.00067802	576.2897964353907	58.497	0.5109	59.246	58.98	59.491	0.74894					15	9	2	0	0	0	0.16764	1	22160	22160		60.074	34.675	1	3549100			62821	9403	45857	46214	61173	61173					-0.0033857824789720325
YENKPRRPY	9	Unmodified	_YENKPRRPY_					0	0	0		ENSG00000133636|ENST00000256010|NTS	ENSG00000133636|ENST00000256010|NTS	ENSG00000133636|ENST00000256010|NTS	MULTI-SECPEP	A375_MHC_IP_R1	1	408.9632873535156	3	408.215761	1221.62546	-0.31232	-0.00012749	-1.4869	-0.00060697	-1.7992	-0.00073447	408.54940944436305	27.079	0.30259	27.079	26.978	27.28	0					9	5	2	0	0	0	0.78351	1	8234	8234		5.2969	0	1	1830600			62822	4517	45858	46215	61174	61174					0.02350737486131038
YENPTYKFF	9	Unmodified	_YENPTYKFF_					0	0	0		nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP	nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-SECPEP	A375_MHC_IP_R1	1	605.1843872070312	2	604.784764	1207.55498	-0.33174	-0.00020063	-0.17829	-0.00010783	-0.51003	-0.00030846	604.7846199041128	81.527	0.60657	81.527	81.253	81.86	0					23	11	3	0	0	0	0.030244	1	29764	29764		107.1	77.259	1	2932400			62823	14649;5293	45859	46216	61175	61175					-0.04049980622221483
YENPTYKFF	9	Unmodified	_YENPTYKFF_					0	0	0		nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP	nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-SECPEP	A375_MHC_IP_R2	2	605.18359375	2	604.784764	1207.55498	-0.51165	-0.00030944	0.24445	0.00014784	-0.2672	-0.0001616	604.7845135011013	80.826	0.51042	81.57	81.265	81.776	0.74474					24	9	3	0	0	0	0.11849	1	30671	30671		70.332	20.778	1	3404700			62824	14649;5293	45859	46216	61176	61176					-0.04049980622221483
YEPDWPGRD	9	Unmodified	_YEPDWPGRD_					0	0	0		nc|ENSG00000136717|O00499-9|BIN1;nc|ENSG00000136717|O00499-10|BIN1;nc|ENSG00000136717|O00499-7|BIN1;nc|ENSG00000136717|O00499-8|BIN1;nc|ENSG00000136717|O00499-4|BIN1;nc|ENSG00000136717|O00499-6|BIN1;nc|ENSG00000136717|O00499-11|BIN1;nc|ENSG00000136717|O00499-3|BIN1;nc|ENSG00000136717|O00499-2|BIN1;nc|ENSG00000136717|O00499-5|BIN1;ENSG00000136717|ENST00000316724|BIN1	nc|ENSG00000136717|O00499-9|BIN1	nc|ENSG00000136717|O00499-9|BIN1	MULTI-MSMS	A375_MHC_IP_R2	2	568.1458740234375	2	567.74617	1133.47779	-0.49702	-0.00028218	0.10944	6.2135E-05	-0.38758	-0.00022005	567.7459493845184	48.891	0.66279	49.649	49.332	49.995	0.75737					21	11	2	0	0	0	0.6324	1	18361	18361		13.042	13.042	1	3633800			62825	4809	45860	46217	61177	61177					-0.08361198838520068
YEPHESFG	8	Unmodified	_YEPHESFG_					0	0	0			REV__ENSG00000256574|ENST00000553795|OR13A1	REV__ENSG00000256574|ENST00000553795|OR13A1	MULTI-MSMS	A375_MHC_IP_R2	2	483.6033630371094	2	483.203607	964.392661	-0.65005	-0.0003141	0.2153	0.00010404	-0.43474	-0.00021007	483.203655495025	27.088	0.61357	27.766	27.536	28.149	0.67857					33	11	4	0	0	0	0.6817	1	9200	9200		40.449	0	1	26366000	+		62826	22883	45861	46218	61178	61178					-0.09095944304317527
YEPHESFG	8	Unmodified	_YEPHESFG_					0	0	0			REV__ENSG00000256574|ENST00000553795|OR13A1	REV__ENSG00000256574|ENST00000553795|OR13A1	MULTI-SECPEP	A375_MHC_IP_R2	2	482.65423583984375	2	483.203607	964.392661	-0.65005	-0.0003141	0.2153	0.00010404	-0.43474	-0.00021007	483.203655495025	27.088	0.61357	27.766	27.536	28.149	0.67857					33	11	4	0	0	0	0.972	1	9379	9379		4.756	4.756	1	26366000	+		62827	22883	45861	46218	61179	61179					-0.09095944304317527
YEPNPFSKY	9	Unmodified	_YEPNPFSKY_					0	0	0		nc|ENSG00000146147|Q5VWP3-4|MLIP;ENST00000511744.1_1_6:53976250-54068425:+|nuORF;ENSG00000146147|ENST00000502396|MLIP;nc|ENSG00000146147|Q5VWP3-2|MLIP;nc|ENSG00000146147|Q5VWP3-1|MLIP	nc|ENSG00000146147|Q5VWP3-4|MLIP	nc|ENSG00000146147|Q5VWP3-4|MLIP	MULTI-SECPEP	A375_MHC_IP_R1	1	572.18994140625	2	572.769114	1143.52368	-0.22313	-0.0001278	-3.6241	-0.0020758	-3.8473	-0.0022036	572.767828898829	59.607	0.55855	59.607	59.295	59.854	0					14	10	2	0	0	0	0.74412	1	21387	21387		14.838	10.894	1	1132100			62828	5606	45862	46219	61180	61180					-0.04234553656283424
YEPPVQESV	9	Unmodified	_YEPPVQESV_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	A375_MHC_IP_R1	1	524.6522216796875	2	524.253297	1046.49204	-0.37378	-0.00019596	0.17262	9.0497E-05	-0.20116	-0.00010546	524.2532837462182	53.707	0.71056	53.707	53.403	54.113	0					35	13	4	0	0	0	0.01185	1	19134	19134		93.938	57.811	1	9466800			62829	5559	45863	46220	61181	61181					-0.029345464102334518
YEPPVQESV	9	Unmodified	_YEPPVQESV_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-SECPEP	A375_MHC_IP_R2	2	524.6519165039062	2	524.253297	1046.49204	-1.0989	-0.00057612	0.19427	0.00010185	-0.90466	-0.00047427	524.2534134563779	53.116	0.50929	53.867	53.638	54.147	0.75105					21	9	3	0	0	0	0.30925	1	20014	20014		41.956	41.956	1	8798800			62830	5559	45863	46220	61182	61182					-0.029345464102334518
YEPQLPYVE	9	Unmodified	_YEPQLPYVE_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	A375_MHC_IP_R2	2	1138.482421875	1	1137.54627	1136.53899	0.33531	0.00038143	-0.48064	-0.00054675	-0.14534	-0.00016533	1137.5456836008423	111.98	1.1737	112.7	112.2	113.37	0.72459					52	22	3	0	0	0	0.2487	1	42107	42107		34.402	6.7729	1	10528000			62831	2483	45864	46221	61183	61183					-0.02381686859121146
YEPQLPYVE	9	Unmodified	_YEPQLPYVE_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	1137.54627	1136.53899	0.33531	0.00038143	-0.48064	-0.00054675	-0.14534	-0.00016533	1137.5456836008423	111.98	1.1737	112.7	112.2	113.37	0.72459	-0.0049251	-0.00019648	NaN	34.402	52	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10528000			62832	2483	45864	46221							-0.02381686859121146
YEPTTKKYK	9	Unmodified	_YEPTTKKYK_					0	0	0			REV__ENST00000435916.1_1_10:52025510-52026503:+|nuORF	REV__ENST00000435916.1_1_10:52025510-52026503:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	386.9446105957031	3	386.544885	1156.61282	-0.47569	-0.00018388	0.05204	2.0116E-05	-0.42365	-0.00016376	386.54487072013023	21.98	0.30551	22.599	22.49	22.795	0.61932					7	5	2	0	0	0	0.75274	1	6995	6995		2.2828	0	1	993700	+		62833	16693	45865	46222	61184	61184					0.040782813032365084
YEQEAELR	8	Unmodified	_YEQEAELR_					0	0	0		nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;ENSG00000120327|ENST00000239449|PCDHB14	nc|ENSG00000120327|Q9Y5E9-2|PCDHB14	nc|ENSG00000120327|Q9Y5E9-2|PCDHB14	MULTI-SECPEP	A375_MHC_IP_R2	2	519.6577758789062	2	519.248546	1036.48254	-0.811	-0.00042111	-0.85842	-0.00044574	-1.6694	-0.00086685	519.2479231569179	33.062	0.35686	33.814	33.635	33.992	0.75225					9	6	2	0	0	0	0.91117	1	11855	11855		21.537	3.3906	1	1603400			62834	3659	45866	46223	61185	61185					-0.03424314695780595
YEQFFSEV	8	Unmodified	_YEQFFSEV_					0	0	0		ENST00000403509.1_1_6:54467537-54467825:-|nuORF	ENST00000403509.1_1_6:54467537-54467825:-|nuORF	ENST00000403509.1_1_6:54467537-54467825:-|nuORF	MSMS	A375_MHC_IP_R2	2	524.6519165039062	2	524.73474	1047.45493	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.053	1	53.804	53.304	54.304	0.75105								0	0	0	0.16876	1	20014	20014		14.582	3.7578	1				62835	11572	45867	46224	61186	61186					-0.06690217955997468
YEQFKQGT	8	Unmodified	_YEQFKQGT_					0	0	0			REV__ENSG00000188629|ENST00000683217|ZNF177	REV__ENSG00000188629|ENST00000683217|ZNF177	MULTI-MSMS	A375_MHC_IP_R2	2	502.6854553222656	2	500.740357	999.46616	-0.80772	-0.00040446	0.20512	0.00010271	-0.60259	-0.00030174	500.7404415838407	35.041	0.75747	35.804	35.475	36.233	0.76338					53	14	5	0	0	0	0.76248	1	12692	12692		16.942	2.3606	1	164990000	+		62836	22102	45868	46225	61187	61187					-0.03359395861855319
YEQLLKCV	8	Unmodified	_YEQLLKCV_					0	0	0		nc|ENSG00000151726|P33121-3|ACSL1	nc|ENSG00000151726|P33121-3|ACSL1	nc|ENSG00000151726|P33121-3|ACSL1	MSMS	A375_MHC_IP_R1	1	498.1877136230469	2	498.265153	994.515753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.986	1	73.986	73.486	74.486	0								0	0	0	0.16876	1	26948	26948		20.871	2.7362	1				62837	14679	45869	46226	61188	61188					0.018275958225899558
YEQQLRARYY	10	Unmodified	_YEQQLRARYY_					0	0	0			REV__ENSG00000149150|ENST00000278426|SLC43A1	REV__ENSG00000149150|ENST00000278426|SLC43A1	MSMS	A375_MHC_IP_R1	1	695.4447021484375	2	695.349126	1388.6837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.585	1	97.585	97.085	98.085	0								0	0	0	0.15417	1	35852	35852		7.2892	1.0834	1		+		62838	19664	45870	46227	61189	61189					0.004903743407567163
YEQRIEERNQF	11	Unmodified	_YEQRIEERNQF_					0	0	0			REV__ENSG00000121621|ENST00000263181|KIF18A	REV__ENSG00000121621|ENST00000263181|KIF18A	MULTI-MSMS	A375_MHC_IP_R1	1	756.764892578125	2	756.365504	1510.71645	-0.53703	-0.00040619	0.24493	0.00018525	-0.29211	-0.00022094	756.3657173882442	61.008	0.40653	61.008	60.821	61.227	0					16	7	3	0	0	0	0.73494	1	21986	21986		4.1895	1.1943	1	2386000	+		62839	18166	45871	46228	61190	61190					-0.01847463327044352
YEREDPVIQWF	11	Unmodified	_YEREDPVIQWF_					0	0	0		ENSG00000085382|ENST00000262903|HACE1;nc|ENSG00000085382|Q8IYU2-3|HACE1;nc|ENSG00000085382|Q8IYU2-4|HACE1;nc|ENSG00000085382|Q8IYU2-2|HACE1	ENSG00000085382|ENST00000262903|HACE1	ENSG00000085382|ENST00000262903|HACE1	MULTI-MSMS	A375_MHC_IP_R2	2	494.921630859375	3	494.573503	1480.69868	-0.82604	-0.00040854	3.0561	0.0015115	2.2301	0.0011029	494.57491121810887	21.925	0.2043	22.544	22.439	22.643	0.61932					5	3	2	0	0	0	0.7328	1	6947	6947		6.2344	0.36622	1	1111000			62840	1810	45872	46229	61191	61191					-0.02244178581918277
YERHRRRRHHH	11	Unmodified	_YERHRRRRHHH_					0	0	0			REV__ENSG00000166546|ENST00000536005|BEAN1	REV__ENSG00000166546|ENST00000536005|BEAN1	MULTI-MSMS	A375_MHC_IP_R2	2	821.3397216796875	2	820.436121	1638.85769	-0.8941	-0.00073355	2.6811	0.0021997	1.787	0.0014661	820.4383258609655	128.32	0.25644	128.56	128.4	128.65	0.23946					10	4	3	0	0	0	0.73924	1	50388	50388		0	0	1	13841000	+		62841	20684	45873	46230	61192	61192					0.06381437400091272
YESDPVKAW	9	Unmodified	_YESDPVKAW_					0	0	0		ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B	ENSG00000077097|ENST00000264331|TOP2B	ENSG00000077097|ENST00000264331|TOP2B	MULTI-MSMS	A375_MHC_IP_R1	1	548.1614990234375	2	547.761289	1093.50803	-0.56069	-0.00030712	0.57514	0.00031504	0.014451	7.9156E-06	547.7617187425166	52.398	0.50688	52.398	52.136	52.643	0					16	9	2	0	0	0	0.050868	1	18646	18646		63.961	37.077	1	4736800			62842	1646	45874	46231	61193	61193					-0.03498840173347162
YESDPVKAW	9	Unmodified	_YESDPVKAW_					0	0	0		ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B	ENSG00000077097|ENST00000264331|TOP2B	ENSG00000077097|ENST00000264331|TOP2B	MULTI-MSMS	A375_MHC_IP_R2	2	548.16064453125	2	547.761289	1093.50803	-1.0514	-0.00057591	0.74994	0.00041079	-0.30144	-0.00016512	547.7616821969145	51.731	0.66264	52.483	52.169	52.831	0.75225					18	12	2	0	0	0	0.0092511	1	19477	19477		103.42	63.462	1	4033800			62843	1646	45874	46231	61194	61194					-0.03498840173347162
YESEFNLFY	9	Unmodified	_YESEFNLFY_					0	0	0			REV__tr|U7SPQ3|U7SPQ3_FUSNUMajoroutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01860PE=4SV=1	REV__tr|U7SPQ3|U7SPQ3_FUSNUMajoroutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01860PE=4SV=1	MSMS	A375_MHC_IP_R1	1	606.664794921875	2	606.266404	1210.51826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.004	1	94.004	93.504	94.504	0								0	0	0	0.15486	1	34552	34552		7.9102	1.187	1		+		62844	28361	45875	46232	61195	61195					-0.07858277238756273
YESEFNLFY	9	Unmodified	_YESEFNLFY_					0	0	0			REV__tr|U7SPQ3|U7SPQ3_FUSNUMajoroutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01860PE=4SV=1	REV__tr|U7SPQ3|U7SPQ3_FUSNUMajoroutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01860PE=4SV=1	MSMS	A375_MHC_IP_R2	2	606.1720581054688	2	606.266404	1210.51826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.814	1	80.559	80.059	81.059	0.74474								0	0	0	0.15486	1	30297	30297		12.532	1.7076	1		+		62845	28361	45875	46232	61196	61196					-0.07858277238756273
YESEFNLFY	9	Unmodified	_YESEFNLFY_					0	0	0			REV__tr|U7SPQ3|U7SPQ3_FUSNUMajoroutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01860PE=4SV=1	REV__tr|U7SPQ3|U7SPQ3_FUSNUMajoroutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01860PE=4SV=1	MSMS	A375_MHC_IP_R2	2	606.1973876953125	2	606.266404	1210.51826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.402	1	93.141	92.641	93.641	0.73902								0	0	0	0.15486	1	35141	35141		12.532	2.4576	1		+		62846	28361	45875	46232	61197	61197					-0.07858277238756273
YESKHSKSY	9	Unmodified	_YESKHSKSY_					0	0	0		nc|ENSG00000104973|Q71SY5-4|MED25	nc|ENSG00000104973|Q71SY5-4|MED25	nc|ENSG00000104973|Q71SY5-4|MED25	MULTI-SECPEP	A375_MHC_IP_R1	1	564.1815185546875	2	564.769645	1127.52474	-0.20418	-0.00011531	-0.96041	-0.00054241	-1.1646	-0.00065772	564.7690749128159	47.895	0.35295	47.895	47.718	48.071	0					9	6	2	0	0	0	0.58271	1	16836	16836		26.884	0	1	2051700			62847	14522	45876	46233	61198	61198					-0.03392339287370305
YESLEVLPTH	10	Unmodified	_YESLEVLPTH_					0	0	0			REV__ENSG00000167981|ENST00000301744|ZNF597	REV__ENSG00000167981|ENST00000301744|ZNF597	MULTI-MSMS	A375_MHC_IP_R1	1	594.7006225585938	2	594.300778	1186.587	0.12635	7.5087E-05	-0.87404	-0.00051944	-0.74769	-0.00044435	594.3004464839195	49.198	0.45612	49.198	48.983	49.439	0					12	8	2	0	0	0	0.55789	1	17418	17418		24.021	1.2843	1	2826800	+		62848	20810	45877	46234	61199	61199					0.001173870609363803
YESLEVLPTH	10	Unmodified	_YESLEVLPTH_					0	0	0			REV__ENSG00000167981|ENST00000301744|ZNF597	REV__ENSG00000167981|ENST00000301744|ZNF597	MULTI-MSMS	A375_MHC_IP_R2	2	594.7003784179688	2	594.300778	1186.587	-0.6111	-0.00036317	-0.47717	-0.00028358	-1.0883	-0.00064676	594.3007199922466	48.651	0.45844	49.408	49.13	49.588	0.75737					11	8	2	0	0	0	0.48529	1	18253	18253		29.082	4.0906	1	2564100	+		62849	20810	45877	46234	61200	61200					0.001173870609363803
YESNDNVNFLD	11	Unmodified	_YESNDNVNFLD_					0	0	0			REV__nc|ENSG00000173692|Q99460-2|PSMD1	REV__nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	A375_MHC_IP_R1	1	665.68310546875	2	665.283314	1328.55207	-0.67117	-0.00044652	0.40246	0.00026775	-0.26871	-0.00017877	665.283608590694	65.437	0.66174	65.437	65.055	65.717	0					24	12	3	0	0	0	0.54969	1	23705	23705		27.223	4.487	1	1929800	+		62850	21239	45878	46235	61201	61201					-0.09905900537660273
YESNDNVNFLD	11	Unmodified	_YESNDNVNFLD_					0	0	0			REV__nc|ENSG00000173692|Q99460-2|PSMD1	REV__nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	A375_MHC_IP_R2	2	665.6825561523438	2	665.283314	1328.55207	-0.8495	-0.00056516	0.2218	0.00014756	-0.6277	-0.0004176	665.2834455936114	64.906	0.60964	65.644	65.308	65.918	0.73812					22	11	3	0	0	0	0.47047	1	24594	24594		33.445	10.709	1	2849100	+		62851	21239	45878	46235	61202	61202					-0.09905900537660273
YESNDNVNFLD	11	Unmodified	_YESNDNVNFLD_					0	0	0			REV__nc|ENSG00000173692|Q99460-2|PSMD1	REV__nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	665.283314	1328.55207	-0.8495	-0.00056516	0.2218	0.00014756	-0.6277	-0.0004176	665.2834455936114	64.906	0.60964	65.644	65.308	65.918	0.73812	0.10316	-0.00014296	NaN	33.445	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2849100	+		62852	21239	45878	46235							-0.09905900537660273
YESNIRKP	8	Unmodified	_YESNIRKP_					0	0	0		ENST00000585878.1_1_18:55240476-55253852:-|nuORF;nc|ENSG00000066926|P22830-2|FECH	ENST00000585878.1_1_18:55240476-55253852:-|nuORF	ENST00000585878.1_1_18:55240476-55253852:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	503.62939453125	2	503.769448	1005.52434	0.081087	4.0849E-05	-0.16747	-8.4364E-05	-0.086379	-4.3515E-05	503.76927943752173	48.825	0.45652	48.825	48.476	48.933	0					10	8	2	0	0	0	0.92867	1	17270	17270		24.021	3.5669	1	1553500			62853	13723	45879	46236	61203	61203					0.021802857834245515
YESPKEQKKY	10	Unmodified	_YESPKEQKKY_					0	0	0		ENSG00000221933|ENST00000641663|OR2A25	ENSG00000221933|ENST00000641663|OR2A25	ENSG00000221933|ENST00000641663|OR2A25	MULTI-SECPEP	A375_MHC_IP_R1	1	433.097900390625	3	433.890832	1298.65067	-0.31675	-0.00013743	-0.42168	-0.00018296	-0.73842	-0.00032039	433.8903119502965	46.755	0.76655	46.755	46.444	47.211	0					26	14	3	0	0	0	0.93406	1	16415	16415		6.1918	0.40842	1	2110400			62854	9672	45880	46237	61204	61204					0.013287474980415936
YESREGTV	8	Unmodified	_YESREGTV_					0	0	0			REV__ENSG00000125848|ENST00000341420|FLRT3	REV__ENSG00000125848|ENST00000341420|FLRT3	MULTI-MSMS	A375_MHC_IP_R1	1	471.12164306640625	2	470.722164	939.429775	-0.30094	-0.00014166	-0.030013	-1.4128E-05	-0.33095	-0.00015579	470.7221236217924	70.468	0.92208	70.468	70.237	71.159	0					32	17	3	0	0	0	0.77123	1	25576	25576		14.582	2.0501	1	3632500	+		62855	18369	45881	46238	61205	61205					-0.042362727585668836
YESSHPFPWTY	11	Unmodified	_YESSHPFPWTY_					0	0	0			REV__ENST00000602150.2_2_19:35530497-35530602:+|nuORF	REV__ENST00000602150.2_2_19:35530497-35530602:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	472.2747802734375	3	471.875182	1412.60372	-0.43821	-0.00020678	-0.20921	-9.8722E-05	-0.64742	-0.0003055	471.8749862863496	19.873	0.35368	19.873	19.776	20.129	0					10	6	2	0	0	0	0.73439	1	5036	5036		4.7159	0	1	5303500	+		62856	26509	45882	46239	61206	61206					-0.08608112053093464
YETKSLKLW	9	Unmodified	_YETKSLKLW_					0	0	0			REV__ENST00000540360.5_1_12:970203-970251:+|nuORF	REV__ENST00000540360.5_1_12:970203-970251:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	390.2853698730469	3	389.88513	1166.63356	0.31681	0.00012352	-0.12472	-4.8626E-05	0.1921	7.4896E-05	389.88504238339516	43.326	0.61142	43.326	43.043	43.655	0					38	11	4	0	0	0	0.21241	1	15036	15036		37.075	0.67963	1	27186000	+		62857	25950	45883	46240	61207	61207					0.05690871682895704
YETRTSYVLR	10	Unmodified	_YETRTSYVLR_					0	0	0		nc|ENSG00000150275|Q96QU1-6|PCDH15;ENSG00000150275|ENST00000644397|PCDH15;nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15	nc|ENSG00000150275|Q96QU1-6|PCDH15	nc|ENSG00000150275|Q96QU1-6|PCDH15	MSMS	A375_MHC_IP_R2	2	429.5252685546875	3	429.894577	1286.6619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.571	1	17.167	16.667	17.667	0.59616								0	0	0	0.15637	1	4903	4903		0.15932	0	1				62858	5839	45884	46241	61208	61208					0.030035695921924344
YETTEIELNNL	11	Unmodified	_YETTEIELNNL_					0	0	0		tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1	tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1	tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1	MSMS	A375_MHC_IP_R1	1	669.7919311523438	2	669.824815	1337.63508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.74	1	110.74	110.24	111.24	0								0	0	0	0.16191	1	40602	40602		8.7454	0.58988	1				62859	29401	45885	46242	61209	61209					-0.020235838096596126
YEVEDVTW	8	Unmodified	_YEVEDVTW_					0	0	0			REV__nc|ENSG00000128573|O15409-2|FOXP2;REV__ENST00000441290.6_1_7:114296499-114304492:+|nuORF	REV__nc|ENSG00000128573|O15409-2|FOXP2	MSMS	A375_MHC_IP_R1	1	520.8363037109375	2	520.732197	1039.44984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.96	1	84.96	84.46	85.46	0								0	0	0	0.16876	1	31130	31130		2.5775	0	1		+		62860	18453;24807	45886	46243	61210	61210					-0.06830521818619673
YEVEIDGKTY	10	Unmodified	_YEVEIDGKTY_					0	0	0		nc|ENSG00000111142|P50579-3|METAP2;ENSG00000111142|ENST00000323666|METAP2;nc|ENSG00000111142|P50579-2|METAP2	nc|ENSG00000111142|P50579-3|METAP2	nc|ENSG00000111142|P50579-3|METAP2	MULTI-SECPEP	A375_MHC_IP_R1	1	609.189697265625	2	608.790244	1215.56593	-0.34868	-0.00021227	-0.0708	-4.3102E-05	-0.41948	-0.00025538	608.790184455408	61.432	1.891	61.432	61.075	62.966	0					94	36	5	0	0	0	0.011497	1	22080	22080		142.92	83.551	1	130860000			62861	2966	45887	46244	61211	61211					-0.03322623038570782
YEVEIDGKTY	10	Unmodified	_YEVEIDGKTY_					0	0	0		nc|ENSG00000111142|P50579-3|METAP2;ENSG00000111142|ENST00000323666|METAP2;nc|ENSG00000111142|P50579-2|METAP2	nc|ENSG00000111142|P50579-3|METAP2	nc|ENSG00000111142|P50579-3|METAP2	MULTI-MSMS	A375_MHC_IP_R2	2	608.68017578125	2	608.790244	1215.56593	-0.748	-0.00045538	-0.026118	-1.5901E-05	-0.77412	-0.00047128	608.7901890235628	60.939	1.7163	61.684	61.314	63.03	0.74503					100	33	5	0	0	0	0.31523	1	22975	22975		39.213	19.851	1	129310000			62862	2966	45887	46244	61212	61212					-0.03322623038570782
YEVFIAQGY	9	Unmodified	_YEVFIAQGY_					0	0	0		ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	MULTI-SECPEP	A375_MHC_IP_R2	2	544.67626953125	2	545.266207	1088.51786	-0.58845	-0.00032086	1.6597	0.00090498	1.0713	0.00058412	545.2665333807759	99.456	0.35822	100.22	99.963	100.32	0.7612					10	6	2	0	0	0	0.74875	1	37684	37684		15.847	11.091	1	700190			62863	5070	45888	46245	61213	61213					-0.022856521679386788
YEVGPWDAGL	10	Unmodified	_YEVGPWDAGL_					0	0	0		ENST00000496932.1_1_1:43830832-43833598:-|nuORF	ENST00000496932.1_1_1:43830832-43833598:-|nuORF	ENST00000496932.1_1_1:43830832-43833598:-|nuORF	MSMS	A375_MHC_IP_R1	1	553.6847534179688	2	553.761289	1105.50803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.065	1	40.065	39.565	40.565	0								0	0	0	0.15332	1	13743	13743		10.074	0	1				62864	12734	45889	46246	61214	61214					-0.04050840173340475
YEVIMGPPY	9	Unmodified	_YEVIMGPPY_					0	0	0			REV__CON__Q28085	REV__CON__Q28085	MULTI-SECPEP	A375_MHC_IP_R1	1	535.1574096679688	2	534.757161	1067.49977	-0.49234	-0.00026328	1.0054	0.00053763	0.51304	0.00027435	534.7576613613489	43.209	0.45831	43.209	42.993	43.451	0					19	8	3	0	0	0	0.62767	1	15038	15038		16.942	9.6531	1	4054000	+	+	62865	15874	45890	46247	61215	61215					-0.031281104142863114
YEVNKHKY	8	Unmodified	_YEVNKHKY_					0	0	0		tr|U7SUS0|U7SUS0_FUSNUDUF3592domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00982PE=4SV=1	tr|U7SUS0|U7SUS0_FUSNUDUF3592domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00982PE=4SV=1	tr|U7SUS0|U7SUS0_FUSNUDUF3592domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00982PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	361.2538757324219	3	360.853941	1079.53999	-0.15131	-5.4602E-05	0.057039	2.0583E-05	-0.094275	-3.4019E-05	360.8539233557748	45.993	0.50474	46.759	46.453	46.957	0.76519					20	9	3	0	0	0	0.972	1	17192	17192		10.824	10.824	1	3556200			62866	29773	45891	46248	61216	61216					0.003405723004561878
YEVNRQVI	8	Unmodified	_YEVNRQVI_					0	0	0		nc|ENSG00000134765|Q08554-2|DSC1;ENSG00000134765|ENST00000257198|DSC1	nc|ENSG00000134765|Q08554-2|DSC1	nc|ENSG00000134765|Q08554-2|DSC1	MULTI-SECPEP	A375_MHC_IP_R1	1	510.66302490234375	2	510.777274	1019.53999	-0.46294	-0.00023646	-0.6494	-0.0003317	-1.1123	-0.00056815	510.7766133776967	39.434	0.30354	39.434	39.238	39.541	0					9	5	2	0	0	0	0.95423	1	13418	13418		18.135	2.2878	1	1384900			62867	4606	45892	46249	61217	61217					0.031005723004682295
YEWIFRKTLLR	11	Unmodified	_YEWIFRKTLLR_					0	0	0			REV__RERG|p.F26L|1|0.32|ENSG00000134533|chr12:15121103-15121103|A/C|missense_variant	REV__RERG|p.F26L|1|0.32|ENSG00000134533|chr12:15121103-15121103|A/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	763.3388671875	2	762.937911	1523.86127	-0.74606	-0.0005692	1.3347	0.0010183	0.58865	0.00044911	762.9391473330858	133.11	0.86755	133.11	132.69	133.56	0					39	16	3	0	0	0	0.73672	1	51332	51332		2.4985	1.3051	1	2807500	+		62868	27883	45893	46250	61218	61218					0.1202924961073677
YEWIFRKTLLR	11	Unmodified	_YEWIFRKTLLR_					0	0	0			REV__RERG|p.F26L|1|0.32|ENSG00000134533|chr12:15121103-15121103|A/C|missense_variant	REV__RERG|p.F26L|1|0.32|ENSG00000134533|chr12:15121103-15121103|A/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	509.3421630859375	3	508.961033	1523.86127	-0.67841	-0.00034528	1.0697	0.00054442	0.39126	0.00019914	508.96172778633934	133.09	0.96284	133.25	132.74	133.7	0.16487					43	18	3	0	0	0	0.73809	2	52392	52392;52472		0.40827	0	1	7830200	+		62869	27883	45893	46250	61219;61220	61219					0.1202924961073677
YEWIFRKTLLR	11	Unmodified	_YEWIFRKTLLR_					0	0	0			REV__RERG|p.F26L|1|0.32|ENSG00000134533|chr12:15121103-15121103|A/C|missense_variant	REV__RERG|p.F26L|1|0.32|ENSG00000134533|chr12:15121103-15121103|A/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	763.3387451171875	2	762.937911	1523.86127	-0.81806	-0.00062413	0.84044	0.0006412	0.022378	1.7073E-05	762.939175550684	133.94	1.0185	134.1	133.5	134.52	0.16487					43	19	3	0	0	0	0.99955	1	52638	52638		2.9952	1.8019	1	8338900	+		62870	27883	45893	46250	61221	61221					0.1202924961073677
YEWIFRKTLLR	11	Unmodified	_YEWIFRKTLLR_					0	0	0			REV__RERG|p.F26L|1|0.32|ENSG00000134533|chr12:15121103-15121103|A/C|missense_variant	REV__RERG|p.F26L|1|0.32|ENSG00000134533|chr12:15121103-15121103|A/C|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	762.937911	1523.86127	-0.74606	-0.0005692	1.3347	0.0010183	0.58865	0.00044911	762.9391473330858	133.11	0.86755	133.11	132.69	133.56	0	-0.040927	-0.00010691	NaN	2.4985	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2807500	+		62871	27883	45893	46250							0.1202924961073677
YEWVLQWQKKM	11	Unmodified	_YEWVLQWQKKM_					0	0	0		ENSG00000128829|ENST00000263791|EIF2AK4;nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;nc|ENSG00000128829|Q9P2K8-3|EIF2AK4	ENSG00000128829|ENST00000263791|EIF2AK4	ENSG00000128829|ENST00000263791|EIF2AK4	MSMS	A375_MHC_IP_R2	2	513.6695556640625	3	513.598995	1537.77516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.785	1	58.534	58.034	59.034	0.74894								0	0	0	0.16305	1	21852	21852		2.8433	0.21205	1				62872	4165	45894	46251	61222	61222					0.027779217136867373
YEWVRHDY	8	Unmodified	_YEWVRHDY_					0	0	0			REV__ENST00000340700.9_1_14:88693854-88707099:-|nuORF	REV__ENST00000340700.9_1_14:88693854-88707099:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	390.5802307128906	3	389.845446	1166.51451	0.27029	0.00010537	0.12637	4.9263E-05	0.39665	0.00015463	390.1802650033003	20.442	0.45658	20.442	20.079	20.536	0					11	8	2	0	0	0	0.972	1	5285	5285		6.2058	6.2058	1	1334300	+		62873	23721	45895	46252	61223	61223					-0.06208902221965218
YEYLCIDDCWM	11	Unmodified	_YEYLCIDDCWM_					0	0	0		ENSG00000102393|ENST00000218516|GLA;ENST00000480513.5_1_X:100653884-100662798:-|nuORF;ENST00000486121.5_1_X:100655741-100662798:-|nuORF;ENST00000479445.1_1_X:100656533-100662864:-|nuORF	ENSG00000102393|ENST00000218516|GLA	ENSG00000102393|ENST00000218516|GLA	MSMS	A375_MHC_IP_R2	2	726.8575439453125	2	727.277274	1452.54	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.68	1	144.71	144.21	145.21	0.024414								0	0	0	0.16353	1	56508	56508		0.35063	0.35063	1				62874	2378	45896	46253	61224	61224					-0.16817299868375812
YEYTGANEY	9	Unmodified	_YEYTGANEY_					0	0	0		ENSG00000029559|ENST00000226284|IBSP	ENSG00000029559|ENST00000226284|IBSP	ENSG00000029559|ENST00000226284|IBSP	MULTI-MSMS	A375_MHC_IP_R1	1	555.6502075195312	2	555.224736	1108.43492	-0.44584	-0.00024754	1.033	0.00057356	0.58717	0.00032601	555.2252528964988	70.644	1.1248	70.644	70.034	71.159	0					29	21	2	0	0	0	0.58047	1	25557	25557		15.847	3.3156	1	1168800			62875	1106	45897	46254	61225	61225					-0.11496013686587503
YFDGDGDD	8	Unmodified	_YFDGDGDD_					0	0	0			REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-MSMS	A375_MHC_IP_R1	1	903.2348022460938	1	903.300283	902.293007	-0.42332	-0.00038239	-3.2955	-0.0029768	-3.7188	-0.0033592	903.2992883031085	133.85	0.61093	133.85	133.36	133.97	0					18	11	2	0	0	0	0.77781	1	51430	51430		2.8892	0.31174	1	2737600	+		62876	16654	45898	46255	61226	61226					-0.16204806708947217
YFDRGAIV	8	Unmodified	_YFDRGAIV_					0	0	0			REV__ENSG00000090520|ENST00000265028|DNAJB11	REV__ENSG00000090520|ENST00000265028|DNAJB11	MULTI-MSMS	A375_MHC_IP_R1	1	471.1479187011719	2	470.747985	939.481417	-0.40131	-0.00018892	0.046215	2.1756E-05	-0.3551	-0.00016716	470.74797087705133	46.336	0.55337	46.336	46.094	46.647	0					16	10	2	0	0	0	0.75805	1	16301	16301		18.135	0	1	2891500	+		62877	16926	45899	46256	61227	61227					0.009255157259985936
YFDVTFLKSY	10	Unmodified	_YFDVTFLKSY_					0	0	0			REV__ENSG00000196353|ENST00000429747|CPNE4	REV__ENSG00000196353|ENST00000429747|CPNE4	MULTI-MSMS	A375_MHC_IP_R2	2	428.6162414550781	3	428.216657	1281.62814	-0.49499	-0.00021196	-0.67163	-0.0002876	-1.1666	-0.00049956	428.21643830809967	19.713	0.91126	20.323	19.841	20.752	0.61029					41	17	3	0	0	0	0.71946	1	6059	6059		3.5871	0	1	12314000	+		62878	22185	45900	46257	61228	61228					-0.0014085189959587296
YFDYWENRTAE	11	Unmodified	_YFDYWENRTAE_					0	0	0			REV__ENSG00000134627|ENST00000299001|PIWIL4	REV__ENSG00000134627|ENST00000299001|PIWIL4	MULTI-SECPEP	A375_MHC_IP_R1	1	498.1441650390625	3	498.549246	1492.62591	0.11692	5.829E-05	-0.6993	-0.00034863	-0.58238	-0.00029034	498.54872835332594	44.702	0.25415	44.702	44.523	44.777	0					6	4	2	0	0	0	0.99916	1	15539	15539		2.4348	1.22	1	932250	+		62879	18791	45901	46258	61229	61229					-0.10069932375358803
YFDYWENRTAE	11	Unmodified	_YFDYWENRTAE_					0	0	0			REV__ENSG00000134627|ENST00000299001|PIWIL4	REV__ENSG00000134627|ENST00000299001|PIWIL4	MULTI-SECPEP	A375_MHC_IP_R2	2	498.6736755371094	3	498.549246	1492.62591	-0.32787	-0.00016346	-0.55255	-0.00027547	-0.88042	-0.00043893	498.8839744148517	43.968	0.45421	44.737	44.48	44.934	0.7691					11	8	2	0	0	0	1.0004	1	16368	16368		2.6312	2.223	1	745330	+		62880	18791	45901	46258	61230	61230					-0.10069932375358803
YFDYYMVWKN	10	Unmodified	_YFDYYMVWKN_					0	0	0			REV__tr|U7SWD0|U7SWD0_FUSNUDUF1963domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00981PE=4SV=1	REV__tr|U7SWD0|U7SWD0_FUSNUDUF1963domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00981PE=4SV=1	MSMS	A375_MHC_IP_R2	2	714.8185424804688	2	714.818281	1427.62201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.87	1	144.89	144.39	145.39	0.021408								0	0	0	0.15628	1	56575	56575		0.45834	0	1		+		62881	28601	45902	46259	61231	61231					-0.07469693402731536
YFEAFLLEAA	10	Unmodified	_YFEAFLLEAA_					0	0	0		MAL2|p.G115E|1|0.16|ENSG00000147676|chr8:119240205-119240205|G/A|missense_variant	MAL2|p.G115E|1|0.16|ENSG00000147676|chr8:119240205-119240205|G/A|missense_variant	MAL2|p.G115E|1|0.16|ENSG00000147676|chr8:119240205-119240205|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	1172.888427734375	1	1173.58265	1172.57538	0.29401	0.00034504	1.7558	0.0020606	2.0498	0.0024056	1173.5864759954911	117.39	0.91283	118.05	117.58	118.49	0.65961					19	17	2	0	0	0	0.93799	1	44393	44393		6.7232	0.51738	1	18184000			62882	14340	45903	46260	61232	61232					-0.004008099623433736
YFEIDDTTYG	10	Unmodified	_YFEIDDTTYG_					0	0	0			REV__nc|ENSG00000145864|P47870-3|GABRB2	REV__nc|ENSG00000145864|P47870-3|GABRB2	MULTI-SECPEP	A375_MHC_IP_R2	2	612.1552124023438	2	612.258776	1222.503	-0.73884	-0.00045236	-1.8395	-0.0011262	-2.5783	-0.0015786	612.257805358158	50.05	0.30379	50.804	50.702	51.006	0.75406					7	5	2	0	0	0	0.87163	1	18867	18867		19.257	10.512	1	1211200	+		62883	19499	45904	46261	61233	61233					-0.09935188826625563
YFEKENRKQQ	10	Unmodified	_YFEKENRKQQ_					0	0	0		ENST00000231004.4_1_5:121402295-121402388:-|nuORF	ENST00000231004.4_1_5:121402295-121402388:-|nuORF	ENST00000231004.4_1_5:121402295-121402388:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	684.6031494140625	2	685.346583	1368.67861	-0.58694	-0.00040226	-2.5449	-0.0017441	-3.1318	-0.0021464	685.3426008274857	104.49	0.20264	104.49	104.34	104.54	0					5	3	2	0	0	0	0.93405	1	38345	38345		8.7454	5.4641	1	588950			62884	10142	45905	46262	61234	61234					0.009020704781278255
YFEKNVDK	8	Unmodified	_YFEKNVDK_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000031900	REV__CON__ENSEMBL:ENSBTAP00000031900	MULTI-MSMS	A375_MHC_IP_R2	2	1044.6572265625	1	1042.52039	1041.51311	0.038794	4.0443E-05	-0.24481	-0.00025522	-0.20602	-0.00021478	1042.5200761926797	105.95	0.66328	106.71	106.42	107.09	0.75977					30	12	3	0	0	0	0.77804	1	39984	39984		2.0598	0	1	10920000	+	+	62885	15845	45906	46263	61235	61235					-0.00598536310712916
YFFFRVRSRRW	11	Unmodified	_YFFFRVRSRRW_					0	0	0		ENSG00000165661|ENST00000358701|QSOX2	ENSG00000165661|ENST00000358701|QSOX2	ENSG00000165661|ENST00000358701|QSOX2	MULTI-SECPEP	A375_MHC_IP_R2	2	541.0933837890625	3	540.628388	1618.86333	-0.82121	-0.00044397	2.6503	0.0014329	1.8291	0.00098889	540.6300522398809	62.883	0.45442	63.626	63.383	63.838	0.74263					12	8	2	0	0	0	1.0015	1	23778	23778		0.094841	0	1	1247000			62886	6976	45907	46264	61236	61236					0.07865723139207148
YFFKGDRYWRY	11	Unmodified	_YFFKGDRYWRY_					0	0	0		ENSG00000156103|ENST00000286614|MMP16	ENSG00000156103|ENST00000286614|MMP16	ENSG00000156103|ENST00000286614|MMP16	MSMS	A375_MHC_IP_R1	1	800.8867797851562	2	800.888418	1599.76228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.4	1	122.4	121.9	122.9	0								0	0	0	0.16297	1	45542	45542		3.2813	0.99853	1				62887	6173	45908	46265	61237	61237					-0.01360773354167577
YFFNTEIGL	9	Unmodified	_YFFNTEIGL_					0	0	0			REV__tr|U7SL02|U7SL02_FUSNUSsuA/THI5-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02015PE=4SV=1	REV__tr|U7SL02|U7SL02_FUSNUSsuA/THI5-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02015PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	552.6736450195312	2	552.274032	1102.53351	-0.37884	-0.00020922	-0.4216	-0.00023284	-0.80044	-0.00044206	552.2736980125725	111.4	0.56235	111.4	111.16	111.72	0					22	10	3	0	0	0	0.067501	1	40854	40854		57.471	0	1	2570300	+		62888	28263	45909	46266	61238	61238					-0.013653656509177381
YFFNTEIGL	9	Unmodified	_YFFNTEIGL_					0	0	0			REV__tr|U7SL02|U7SL02_FUSNUSsuA/THI5-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02015PE=4SV=1	REV__tr|U7SL02|U7SL02_FUSNUSsuA/THI5-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02015PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	551.6312255859375	2	552.274032	1102.53351	-0.37884	-0.00020922	-0.4216	-0.00023284	-0.80044	-0.00044206	552.2736980125725	111.4	0.56235	111.4	111.16	111.72	0					22	10	3	0	0	0	0.65246	1	40862	40862		21.747	0	1	2570300	+		62889	28263	45909	46266	61239	61239					-0.013653656509177381
YFFYKWLVYV	10	Unmodified	_YFFYKWLVYV_					0	0	0		ENSG00000138600|ENST00000261854|SPPL2A;ENST00000559527.1_1_15:51023229-51039693:-|nuORF	ENSG00000138600|ENST00000261854|SPPL2A	ENSG00000138600|ENST00000261854|SPPL2A	MSMS	A375_MHC_IP_R1	1	476.4848327636719	3	476.584792	1426.73255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.238	1	75.238	74.738	75.738	0								0	0	0	0.15585	1	27412	27412		0.77653	0.27058	1				62890	5004	45910	46267	61240	61240					0.036248946477826394
YFHVKTRFMHY	11	Unmodified	_YFHVKTRFMHY_					0	0	0			REV__ENST00000453465.1_1_10:21915067-21915193:-|nuORF	REV__ENST00000453465.1_1_10:21915067-21915193:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	765.2796630859375	2	764.879539	1527.74452	-0.98558	-0.00075385	0.97848	0.00074842	-0.0070907	-5.4235E-06	764.8804407684129	55.562	0.35453	56.312	56.135	56.489	0.75075					16	6	3	0	0	0	0.65374	1	21003	21003		29.841	8.2504	1	6546200	+		62891	24910	45911	46268	61241	61241					0.0017618811934880796
YFHVKTRFMHY	11	Unmodified	_YFHVKTRFMHY_					0	0	0			REV__ENST00000453465.1_1_10:21915067-21915193:-|nuORF	REV__ENST00000453465.1_1_10:21915067-21915193:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	764.879539	1527.74452	-0.98558	-0.00075385	0.97848	0.00074842	-0.0070907	-5.4235E-06	764.8804407684129	55.562	0.35453	56.312	56.135	56.489	0.75075	0.071585	0.00023786	NaN	29.841	16	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6546200	+		62892	24910	45911	46268							0.0017618811934880796
YFILSFLW	8	Unmodified	_YFILSFLW_					0	0	0		ENST00000402506.5_1_7:2567604-2567793:+|nuORF	ENST00000402506.5_1_7:2567604-2567793:+|nuORF	ENST00000402506.5_1_7:2567604-2567793:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	545.1571655273438	2	544.794404	1087.57425	-0.48852	-0.00026614	-3.6821	-0.002006	-4.1706	-0.0022721	544.7920232457878	63.093	0.46067	63.093	62.966	63.427	0					11	8	2	0	0	0	0.93416	1	22778	22778		20.871	0	1	639000			62893	11566	45912	46269	61242	61242					0.03397020459374289
YFILVCSIHF	10	Unmodified	_YFILVCSIHF_					0	0	0			REV__OR51B2|p.S241F|1|0.46|ENSG00000279012|chr11:5323576-5323576|G/A|missense_variant	REV__OR51B2|p.S241F|1|0.46|ENSG00000279012|chr11:5323576-5323576|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	414.60064697265625	3	414.551094	1240.63145	-0.33243	-0.00013781	-0.05034	-2.0868E-05	-0.38277	-0.00015868	414.551032502373	21.212	0.60824	21.832	21.371	21.979	0.61932					15	11	2	0	0	0	0.71266	1	6545	6545		6.6304	1.1071	1	1573900	+		62894	27677	45913	46270	61243	61243					0.020761196734383702
YFINNLIC	8	Unmodified	_YFINNLIC_					0	0	0			REV__nc|ENSG00000053770|Q9H0R1-2|AP5M1	REV__nc|ENSG00000053770|Q9H0R1-2|AP5M1	MULTI-SECPEP	A375_MHC_IP_R2	2	999.9805297851562	1	999.496815	998.489538	0.065657	6.5624E-05	0.83901	0.00083858	0.90466	0.00090421	1000.5008550727512	119.58	0.3043	120.11	119.99	120.29	0.5321					6	5	2	0	0	0	0.96296	1	45528	45528		10.183	0.83596	1	18460000	+		62895	26087	45914	46271	61244	61244					-0.00976673348895929
YFKIKHLLK	9	Unmodified	_YFKIKHLLK_					0	0	0		SCNN1B|p.S106F|1|0.37|ENSG00000168447|chr16:23352806-23352806|C/T|missense_variant	SCNN1B|p.S106F|1|0.37|ENSG00000168447|chr16:23352806-23352806|C/T|missense_variant	SCNN1B|p.S106F|1|0.37|ENSG00000168447|chr16:23352806-23352806|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	595.4374389648438	2	595.376426	1188.7383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.52	1	106.28	105.78	106.78	0.75977								0	0	0	0.15486	1	39908	39908		2.3027	0.65011	1				62896	29120	45915	46272	61245	61245					0.15148037950120852
YFKRKWKTPFE	11	Unmodified	_YFKRKWKTPFE_					0	0	0		SERPINB2|p.G206R|1|0.45|ENSG00000197632|chr18:63901820-63901820|G/A|missense_variant	SERPINB2|p.G206R|1|0.45|ENSG00000197632|chr18:63901820-63901820|G/A|missense_variant	SERPINB2|p.G206R|1|0.45|ENSG00000197632|chr18:63901820-63901820|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	510.6822509765625	3	510.613633	1528.81907	-0.68531	-0.00034993	0.10972	5.6023E-05	-0.57559	-0.00029391	510.61357275151653	133.15	0.6597	133.32	132.79	133.45	0.16487					24	12	2	0	0	0	0.73795	1	52227	52227		0.45452	0	1	3985700			62897	29138	45916	46273	61246	61246					0.07581274202334498
YFKSGDEVW	9	Unmodified	_YFKSGDEVW_					0	0	0		RTN4IP1|p.P139S|1|0.27|ENSG00000130347|chr6:106622829-106622829|G/A|missense_variant	RTN4IP1|p.P139S|1|0.27|ENSG00000130347|chr6:106622829-106622829|G/A|missense_variant	RTN4IP1|p.P139S|1|0.27|ENSG00000130347|chr6:106622829-106622829|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	565.2053833007812	2	565.761289	1129.50803	-0.63059	-0.00035676	0.049951	2.826E-05	-0.58064	-0.0003285	565.7613091630236	62.106	0.40632	62.849	62.673	63.079	0.74263					12	7	2	0	0	0	0.74412	1	23599	23599		10.074	10.074	1	1705300			62898	29098	45917	46274	61247	61247					-0.05154840173327102
YFLIFYFLF	9	Unmodified	_YFLIFYFLF_					0	0	0			REV__ENST00000318066.6_1_12:93803447-93803516:-|nuORF	REV__ENST00000318066.6_1_12:93803447-93803516:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	424.9468078613281	3	424.894966	1271.66307	-0.28702	-0.00012195	-0.38443	-0.00016334	-0.67145	-0.0002853	425.22923249827596	19.366	0.20283	19.366	19.268	19.471	0					6	3	2	0	0	0	0.71416	1	4674	4674		5.7319	1.0159	1	2204600	+		62899	23549	45918	46275	61248	61248					0.03810435699028858
YFLPFELA	8	Unmodified	_YFLPFELA_					0	0	0		ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-SECPEP	A375_MHC_IP_R1	1	1000.1385498046875	1	999.518596	998.51132	0.5125	0.00051225	4.4237	0.0044216	4.9362	0.0049338	1000.5293813684902	126.43	0.25293	126.43	126.3	126.56	0					5	4	2	0	0	0	0.8824	1	48257	48257		30.225	0	1	5141900			62900	1420;3881	45919	46276	61249	61249					0.012004546713228592
YFLWHTYRWLL	11	Unmodified	_YFLWHTYRWLL_					0	0	0		nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	MULTI-MSMS	A375_MHC_IP_R1	1	799.8197631835938	2	799.419354	1596.82415	-0.84046	-0.00067188	1.5621	0.0012488	0.72169	0.00057693	799.4200793012972	68.156	0.35552	68.156	67.904	68.26	0					13	6	3	0	0	0	0.73809	1	24714	24714		1.1933	0.84271	1	2154400			62901	3274	45920	46277	61250	61250					0.04961578064967398
YFLWHTYRWLL	11	Unmodified	_YFLWHTYRWLL_					0	0	0		nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	MULTI-MATCH	A375_MHC_IP_R2	2		2	799.419354	1596.82415	-0.90868	-0.00072641	0.92209	0.00073714	0.013416	1.0725E-05	799.4198269564049	67.504	0.25572	68.24	68.052	68.308	0.73631	0.042188	-0.00045896	NaN	1.1933	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2073700			62902	3274	45920	46277							0.04961578064967398
YFNDFAIF	8	Unmodified	_YFNDFAIF_					0	0	0		tr|U7SL83|U7SL83_FUSNU23SrRNA(Uracil-5-)-methyltransferaseRumAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01932PE=3SV=1	tr|U7SL83|U7SL83_FUSNU23SrRNA(Uracil-5-)-methyltransferaseRumAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01932PE=3SV=1	tr|U7SL83|U7SL83_FUSNU23SrRNA(Uracil-5-)-methyltransferaseRumAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01932PE=3SV=1	MSMS	A375_MHC_IP_R2	2	518.6526489257812	2	518.742368	1035.47018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.61	1	105.37	104.87	105.87	0.76308								0	0	0	0.16876	1	39575	39575		10.183	0.83596	1				62903	29494	45921	46278	61251	61251					-0.04613306368150916
YFNRKRLMNNW	11	Unmodified	_YFNRKRLMNNW_					0	0	0			REV__SERPINA4|p.L304M|1|0.27|ENSG00000100665|chr14:94567230-94567230|T/A|missense_variant	REV__SERPINA4|p.L304M|1|0.27|ENSG00000100665|chr14:94567230-94567230|T/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	514.6981811523438	3	514.597988	1540.77214	-0.77312	-0.00039785	0.077923	4.0099E-05	-0.6952	-0.00035775	514.9323340819842	133.18	0.92014	133.18	132.74	133.66	0					36	17	4	0	0	0	1.0011	1	51391	51391		0.45452	0	1	3461000	+		62904	27941	45922	46279	61252	61252					0.023380913795790548
YFPEEKQDWWW	11	Unmodified	_YFPEEKQDWWW_					0	0	0		SEC63|p.E649D|1|0.47|ENSG00000025796|chr6:107876651-107876651|T/A|missense_variant	SEC63|p.E649D|1|0.47|ENSG00000025796|chr6:107876651-107876651|T/A|missense_variant	SEC63|p.E649D|1|0.47|ENSG00000025796|chr6:107876651-107876651|T/A|missense_variant	MSMS	A375_MHC_IP_R2	2	807.8340454101562	2	807.356616	1612.69868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.56	1	144.59	144.09	145.09	0.024414								0	0	0	0.1636	1	56464	56464		0	0	1				62905	29127	45923	46280	61253	61253					-0.08316178581912936
YFPRLHLYANQ	11	Unmodified	_YFPRLHLYANQ_					0	0	0			REV__ENSG00000166535|ENST00000299698|A2ML1	REV__ENSG00000166535|ENST00000299698|A2ML1	MSMS	A375_MHC_IP_R2	2	474.6078796386719	3	474.582333	1420.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.303	1	19.906	19.406	20.406	0.60308								0	0	0	0.16297	1	5917	5917		1.3296	0	1		+		62906	20683	45924	46281	61254	61254					0.03163555100127269
YFPYLENRY	9	Unmodified	_YFPYLENRY_					0	0	0		CFH|p.G397R|1|0.17|ENSG00000000971|chr1:196690092-196690092|G/A|missense_variant	CFH|p.G397R|1|0.17|ENSG00000000971|chr1:196690092-196690092|G/A|missense_variant	CFH|p.G397R|1|0.17|ENSG00000000971|chr1:196690092-196690092|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	633.7255249023438	2	632.803488	1263.59242	-0.62578	-0.000396	0.29671	0.00018776	-0.32907	-0.00020824	632.8035399058482	104.24	0.61078	104.24	103.93	104.54	0					25	11	3	0	0	0	0.36834	1	38257	38257		21.747	0.15649	1	4748800			62907	378	45925	46282	61255	61255					-0.02882889356578744
YFQHREFSF	9	Unmodified	_YFQHREFSF_					0	0	0		ENSG00000198056|ENST00000338193|PRIM1;ENST00000546761.5_1_12:57139854-57146049:-|nuORF;ENST00000548173.5_1_12:57140708-57146082:-|nuORF	ENSG00000198056|ENST00000338193|PRIM1	ENSG00000198056|ENST00000338193|PRIM1	MULTI-SECPEP	A375_MHC_IP_R1	1	421.6553649902344	3	420.864729	1259.57236	0.096965	4.0809E-05	0.0065178	2.7431E-06	0.10348	4.3552E-05	420.86463594162103	55.661	0.51042	55.661	55.381	55.891	0					13	9	2	0	0	0	0.76452	1	19902	19902		8.4443	6.3603	1	3674700			62908	9225	45926	46283	61256	61256					-0.04704640296540674
YFQHREFSF	9	Unmodified	_YFQHREFSF_					0	0	0		ENSG00000198056|ENST00000338193|PRIM1;ENST00000546761.5_1_12:57139854-57146049:-|nuORF;ENST00000548173.5_1_12:57140708-57146082:-|nuORF	ENSG00000198056|ENST00000338193|PRIM1	ENSG00000198056|ENST00000338193|PRIM1	MULTI-SECPEP	A375_MHC_IP_R2	2	421.6551818847656	3	420.864729	1259.57236	-0.27582	-0.00011608	0.14322	6.0277E-05	-0.1326	-5.5807E-05	421.1991110258857	54.758	0.61152	55.509	55.269	55.881	0.75075					23	11	3	0	0	0	0.74875	1	20670	20670		10.899	9.3067	1	2483300			62909	9225	45926	46283	61257	61257					-0.04704640296540674
YFRIRFYFWNW	11	Unmodified	_YFRIRFYFWNW_					0	0	0		TYK2|p.R110W|1|0.24|ENSG00000105397|chr19:10368192-10368192|G/A|missense_variant	TYK2|p.R110W|1|0.24|ENSG00000105397|chr19:10368192-10368192|G/A|missense_variant	TYK2|p.R110W|1|0.24|ENSG00000105397|chr19:10368192-10368192|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	566.6722412109375	3	566.617377	1696.8303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.88	1	110.62	110.12	111.12	0.74684								0	0	0	0.16336	1	41457	41457		1.2148	1.1315	1				62910	30102	45927	46284	61258	61258					0.009760962965174258
YFRIRFYFWNW	11	Unmodified	_YFRIRFYFWNW_					0	0	0		TYK2|p.R110W|1|0.24|ENSG00000105397|chr19:10368192-10368192|G/A|missense_variant	TYK2|p.R110W|1|0.24|ENSG00000105397|chr19:10368192-10368192|G/A|missense_variant	TYK2|p.R110W|1|0.24|ENSG00000105397|chr19:10368192-10368192|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	849.6795654296875	2	849.422428	1696.8303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.34	1	117	116.5	117.5	0.65962								0	0	0	0.1635	1	43926	43926		1.4819	1.4819	1				62911	30102	45927	46284	61259	61259					0.009760962965174258
YFRKMPLLLI	10	Unmodified	_YFRKMPLLLI_					0	0	0		ENSG00000043462|ENST00000046794|LCP2	ENSG00000043462|ENST00000046794|LCP2	ENSG00000043462|ENST00000046794|LCP2	MULTI-MSMS	A375_MHC_IP_R1	1	1294.17578125	1	1293.77516	1292.76789	-0.3681	-0.00047624	0.28595	0.00036995	-0.082155	-0.00010629	1293.775195865653	149.34	1.6948	149.34	148.11	149.81	0					94	40	3	0	0	0	0.72747	1	57000	57000		0	0	1	486080			62912	1180	45928	46285	61260	61260					0.133212339039801
YFRKPYNFLKY	11	Unmodified	_YFRKPYNFLKY_					0	0	0		ENSG00000157131|ENST00000361249|C8A	ENSG00000157131|ENST00000361249|C8A	ENSG00000157131|ENST00000361249|C8A	MSMS	A375_MHC_IP_R1	1	513.6155395507812	3	513.61	1537.80817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.918	1	53.918	53.418	54.418	0								0	0	0	0.16334	1	19233	19233		1.3296	0.11481	1				62913	6231	45929	46286	61261	61261					0.060778718280744215
YFRKPYNFLKY	11	Unmodified	_YFRKPYNFLKY_					0	0	0		ENSG00000157131|ENST00000361249|C8A	ENSG00000157131|ENST00000361249|C8A	ENSG00000157131|ENST00000361249|C8A	MSMS	A375_MHC_IP_R1	1	513.6322021484375	3	513.61	1537.80817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.925	1	54.925	54.425	55.425	0								0	0	0	0.16334	1	19630	19630		1.3296	0	1				62914	6231	45929	46286	61262	61262					0.060778718280744215
YFRQSLSYL	9	Unmodified	_YFRQSLSYL_					0	0	0		ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	MULTI-SECPEP	A375_MHC_IP_R1	1	589.2056274414062	2	588.806031	1175.59751	-0.30747	-0.00018104	-1.2203	-0.00071853	-1.5278	-0.00089957	588.8063573242113	73.786	0.70926	73.786	73.336	74.045	0					31	13	3	0	0	0	0.41434	1	26836	26836		39.95	15.929	1	3171500			62915	1706	45930	46287	61263	61263					0.016734145060581795
YFRQSLSYL	9	Unmodified	_YFRQSLSYL_					0	0	0		ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	589.2060546875	2	588.806031	1175.59751	-0.60949	-0.00035887	-1.487	-0.00087556	-2.0965	-0.0012344	589.306423690419	72.89	0.6608	73.625	73.278	73.938	0.73541					26	12	3	0	0	0	0.33896	1	27627	27627		47.594	9.6204	1	5924200			62916	1706	45930	46287	61264	61264					0.016734145060581795
YFRYYEEEFAR	11	Unmodified	_YFRYYEEEFAR_					0	0	0			REV__nc|ENSG00000157214|Q8NFT2-2|STEAP2	REV__nc|ENSG00000157214|Q8NFT2-2|STEAP2	MSMS	A375_MHC_IP_R1	1	786.8571166992188	2	786.859523	1571.70449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.64	1	144.64	144.14	145.14	0								0	0	0	0.16354	1	55462	55462		0.30703	0.30703	1		+		62917	20019	45931	46288	61265	61265					-0.058490800702429624
YFSKLQALL	9	Unmodified	_YFSKLQALL_					0	0	0			REV__ENSG00000165572|ENST00000379485|KBTBD6	REV__ENSG00000165572|ENST00000379485|KBTBD6	MULTI-SECPEP	A375_MHC_IP_R1	1	1083.028076171875	1	1082.62446	1081.61718	-0.1151	-0.00012461	1.7068	0.0018478	1.5917	0.0017232	1082.6281944590867	120.44	0.40224	120.44	120.2	120.6	0					14	7	3	0	0	0	0.81254	1	44601	44601		2.0598	0	1	21065000	+		62918	20597	45932	46289	61266	61266					0.07963790516805602
YFSKNYQDYEY	11	Unmodified	_YFSKNYQDYEY_					0	0	0		nc|ENSG00000123560|P60201-2|PLP1;ENSG00000123560|ENST00000621218|PLP1;ENST00000480325.1_1_X:103031923-103040698:+|nuORF;ENST00000465975.1_1_X:103031923-103041682:+|nuORF;PLP1|p.G147*|1|0.24|ENSG00000123560|chrX:103786709-103786710|-/TA|frameshift_variant;ENST00000485931.5_1_X:103031923-103041682:+|nuORF	nc|ENSG00000123560|P60201-2|PLP1	nc|ENSG00000123560|P60201-2|PLP1	MULTI-MSMS	A375_MHC_IP_R2	2	760.7213745117188	2	760.322439	1518.63033	-0.85273	-0.00064835	-0.83536	-0.00063514	-1.6881	-0.0012835	760.321967312139	70.39	0.50757	71.124	70.895	71.402	0.73421					24	9	3	0	0	0	0.73016	1	26658	26658		8.7454	0.58988	1	8981400			62919	3853	45933	46290	61267	61267					-0.10824467952420491
YFSLVYLYNFF	11	Unmodified	_YFSLVYLYNFF_					0	0	0			REV__nc|ENSG00000165186|Q96NR3-2|PTCHD1	REV__nc|ENSG00000165186|Q96NR3-2|PTCHD1	MSMS	A375_MHC_IP_R2	2	492.67919921875	3	492.579706	1474.71729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.839	1	34.591	34.091	35.091	0.75225								0	0	0	0.16269	1	12154	12154		4.7159	0	1		+		62920	20557	45934	46291	61268	61268					-0.001080169400665909
YFSNWLHGDL	10	Unmodified	_YFSNWLHGDL_					0	0	0		ENST00000474352.5_1_1:151337855-151338307:-|nuORF;ENST00000427977.6_1_1:151337413-151341586:-|nuORF;ENST00000455397.5_1_1:151337021-151341586:-|nuORF;ENST00000443708.5_1_1:151337021-151341586:-|nuORF;nc|ENSG00000143416|Q13228-2|SELENBP1;nc|ENSG00000143416|Q13228-3|SELENBP1;ENSG00000143416|ENST00000368868|SELENBP1;nc|ENSG00000143416|Q13228-4|SELENBP1	ENST00000474352.5_1_1:151337855-151338307:-|nuORF	ENST00000474352.5_1_1:151337855-151338307:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	626.6923828125	2	626.293288	1250.57202	-1.1499	-0.00072016	0.80994	0.00050726	-0.33993	-0.0002129	626.2938928950877	57.446	1.7801	58.194	57.355	59.135	0.74894					62	34	3	0	0	0	0.71361	1	21560	21560		6.2058	0	1	5503900			62921	5387	45935	46292	61269	61269					-0.04324060016369913
YFSPIHSQL	9	Unmodified	_YFSPIHSQL_					0	0	0		ENSG00000239900|ENST00000623063|ADSL;ADSL|p.H442Y|1|0.19|ENSG00000239900|chr22:40365012-40365012|C/T|missense_variant;ADSL|p.A431V|1|0.05|ENSG00000239900|chr22:40364980-40364980|C/T|missense_variant	ENSG00000239900|ENST00000623063|ADSL	ENSG00000239900|ENST00000623063|ADSL	MULTI-SECPEP	A375_MHC_IP_R1	1	546.6795043945312	2	546.279649	1090.54475	-0.67966	-0.00037128	0.62536	0.00034162	-0.0543	-2.9663E-05	546.2799558700675	65.845	0.35539	65.845	65.616	65.972	0					14	6	3	0	0	0	0.070665	1	23869	23869		69.105	16.837	1	2132700			62922	9769	45936	46293	61270	61270					0.003094564432331026
YFSPIHSQL	9	Unmodified	_YFSPIHSQL_					0	0	0		ENSG00000239900|ENST00000623063|ADSL;ADSL|p.H442Y|1|0.19|ENSG00000239900|chr22:40365012-40365012|C/T|missense_variant;ADSL|p.A431V|1|0.05|ENSG00000239900|chr22:40364980-40364980|C/T|missense_variant	ENSG00000239900|ENST00000623063|ADSL	ENSG00000239900|ENST00000623063|ADSL	MULTI-MATCH	A375_MHC_IP_R2	2		2	546.279649	1090.54475	-0.82697	-0.00045175	0.81194	0.00044355	-0.015028	-8.2096E-06	546.2801955070987	64.955	0.4063	65.693	65.511	65.917	0.73811	-0.076018	0.00016989	NaN	96.111	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1560000			62923	9769	45936	46293							0.003094564432331026
YFSQHRRT	8	Unmodified	_YFSQHRRT_					0	0	0		ZNF442|p.L503F|1|0.19|ENSG00000198342|chr19:12350078-12350078|G/A|missense_variant	ZNF442|p.L503F|1|0.19|ENSG00000198342|chr19:12350078-12350078|G/A|missense_variant	ZNF442|p.L503F|1|0.19|ENSG00000198342|chr19:12350078-12350078|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	1094.9481201171875	1	1094.549	1093.54173	0.096653	0.00010579	-2.3858	-0.0026114	-2.2891	-0.0025056	1094.5466404818346	122.84	0.7092	123.22	122.97	123.68	0.3766					18	13	2	0	0	0	0.972	1	47238	47238		8.5933	0.68312	1	27219000			62924	30219	45937	46294	61271	61271					-0.0013037389089731732
YFSSRPAL	8	Unmodified	_YFSSRPAL_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1;ENST00000466794.5_1_19:12767171-12772081:-|nuORF	nc|ENSG00000104774|O00754-2|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-SECPEP	A375_MHC_IP_R1	1	471.163818359375	2	470.747985	939.481417	-0.40131	-0.00018892	0.046215	2.1756E-05	-0.3551	-0.00016716	470.74797087705133	46.336	0.55337	46.336	46.094	46.647	0					16	10	2	0	0	0	0.9187	1	16248	16248		19.257	1.122	1	2891500			62925	2535	45938	46295	61272	61272					0.009255157259872249
YFSSRPAL	8	Unmodified	_YFSSRPAL_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1;ENST00000466794.5_1_19:12767171-12772081:-|nuORF	nc|ENSG00000104774|O00754-2|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-SECPEP	A375_MHC_IP_R2	2	471.16375732421875	2	470.747985	939.481417	-0.62278	-0.00029317	0.24803	0.00011676	-0.37475	-0.00017641	470.74812833026834	45.462	0.55479	46.227	45.997	46.552	0.76519					16	10	2	0	0	0	0.8957	1	17019	17019		28.487	3.813	1	3423400			62926	2535	45938	46295	61273	61273					0.009255157259872249
YFTFQLQNIVK	11	Unmodified	_YFTFQLQNIVK_					0	0	0		ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	MULTI-MSMS	A375_MHC_IP_R2	2	467.9899597167969	3	467.590605	1399.74999	-0.90931	-0.00042518	-0.068043	-3.1816E-05	-0.97735	-0.000457	467.59048924976906	19.191	0.45327	19.794	19.583	20.037	0.60308					14	8	2	0	0	0	0.73679	1	5929	5929		2.4348	0	1	2450700			62927	3851	45939	46296	61274	61274					0.0661019018280058
YFTIKLYWWRF	11	Unmodified	_YFTIKLYWWRF_					0	0	0		ENSG00000145428|ENST00000347063|RNF175	ENSG00000145428|ENST00000347063|RNF175	ENSG00000145428|ENST00000347063|RNF175	MULTI-MSMS	A375_MHC_IP_R1	1	541.6649169921875	3	541.622128	1621.84456	-0.56873	-0.00030804	0.022228	1.2039E-05	-0.5465	-0.000296	541.6217882287922	55.661	0.61005	55.661	55.381	55.991	0					18	11	2	0	0	0	0.73902	1	19979	19979		0.08335	0.010087	1	5437900			62928	5560	45940	46297	61275	61275					0.05850748724787991
YFTQGNPFY	9	Unmodified	_YFTQGNPFY_					0	0	0			REV__TM4SF18|p.S36F|1|0.66|ENSG00000163762|chr3:149333276-149333276|G/A|missense_variant	REV__TM4SF18|p.S36F|1|0.66|ENSG00000163762|chr3:149333276-149333276|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	570.1614379882812	2	568.756007	1135.49746	-0.38012	-0.0002162	-0.11828	-6.7271E-05	-0.4984	-0.00028347	568.7540214687498	39.534	0.71092	40.308	39.965	40.676	0.77451					52	13	6	0	0	0	0.25276	1	14556	14556		34.102	7.2188	1	24545000	+		62929	28125	45941	46298	61276	61276					-0.06486822827764627
YFTVEMDY	8	Unmodified	_YFTVEMDY_					0	0	0			REV__NID2|p.H614Y|1|0.35|ENSG00000087303|chr14:52040837-52040837|G/A|missense_variant	REV__NID2|p.H614Y|1|0.35|ENSG00000087303|chr14:52040837-52040837|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	1067.386962890625	1	1067.43903	1066.43175	0.26227	0.00027996	2.2863	0.0024405	2.5486	0.0027205	1067.4420750176066	140.59	0.25217	140.63	140.45	140.7	0.04216					5	4	2	0	0	0	0.7779	1	54983	54983		2.5775	0.51773	1	1337800	+		62930	27603	45942	46299	61277	61277					-0.09880980064963296
YFVFYDGGKS	10	Unmodified	_YFVFYDGGKS_					0	0	0			REV__ENSG00000099219|ENST00000339450|ERMP1	REV__ENSG00000099219|ENST00000339450|ERMP1	MSMS	A375_MHC_IP_R1	1	591.6975708007812	2	591.776939	1181.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.24	1	84.24	83.74	84.74	0								0	0	0	0.15391	1	30849	30849		8.1555	0.8663	1		+		62931	17013	45943	46300	61278	61278					-0.0441826713924911
YFVIQTYL	8	Unmodified	_YFVIQTYL_					0	0	0		GABRA1|p.L429Afs*7|1|0.08|ENSG00000022355|chr5:161897329-161897330|-/T|frameshift_variant;ENSG00000022355|ENST00000393943|GABRA1;GABRA2|p.R301Nfs*31|1|0.11|ENSG00000151834|chr4:46262084-46262085|-/TGTT|frameshift_variant;GABRA5|p.A356Pfs*15|1|0.43|ENSG00000186297|chr15:26943397-26943397|A/-|frameshift_variant;ENSG00000151834|ENST00000381620|GABRA2;nc|ENSG00000151834|P47869-2|GABRA2;ENSG00000186297|ENST00000335625|GABRA5;ENSG00000011677|ENST00000370314|GABRA3;GABRA2|p.I250F|1|0.32|ENSG00000151834|chr4:46303568-46303568|T/A|missense_variant	GABRA1|p.L429Afs*7|1|0.08|ENSG00000022355|chr5:161897329-161897330|-/T|frameshift_variant;GABRA2|p.I250F|1|0.32|ENSG00000151834|chr4:46303568-46303568|T/A|missense_variant	GABRA1|p.L429Afs*7|1|0.08|ENSG00000022355|chr5:161897329-161897330|-/T|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	524.1800537109375	2	523.781493	1045.54843	-0.47108	-0.00024674	-3.4934	-0.0018298	-3.9645	-0.0020765	523.7801503081535	133.14	0.40657	133.31	133.15	133.55	0.16487					10	7	2	0	0	0	0.97021	1	52389	52389		15.847	0	1	6180200			62932	1068;14031	45944	46301	61279	61279					0.027481262170795162
YFVPHTKRY	9	Unmodified	_YFVPHTKRY_					0	0	0		ENST00000419821.6_1_12:118693456-118704503:-|nuORF	ENST00000419821.6_1_12:118693456-118704503:-|nuORF	ENST00000419821.6_1_12:118693456-118704503:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	404.61669921875	3	404.217102	1209.62948	-0.49842	-0.00020147	-0.42405	-0.00017141	-0.92246	-0.00037288	404.2167608064124	24.939	0.50548	24.939	24.547	25.053	0					15	9	2	0	0	0	0.52197	1	7189	7189		18.721	10.277	1	7357500			62933	11721	45945	46302	61280	61280					0.03304826979842801
YFVPHTKRY	9	Unmodified	_YFVPHTKRY_					0	0	0		ENST00000419821.6_1_12:118693456-118704503:-|nuORF	ENST00000419821.6_1_12:118693456-118704503:-|nuORF	ENST00000419821.6_1_12:118693456-118704503:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	404.6167297363281	3	404.217102	1209.62948	-0.27793	-0.00011235	-0.46464	-0.00018781	-0.74257	-0.00030016	404.2166799713217	24.212	0.66172	24.856	24.55	25.212	0.64368					16	12	2	0	0	0	0.11638	1	7938	7938		47.732	35.557	1	6147500			62934	11721	45945	46302	61281	61281					0.03304826979842801
YFVPLVKRL	9	Unmodified	_YFVPLVKRL_					0	0	0		nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B	nc|ENSG00000137713|P30154-3|PPP2R1B	nc|ENSG00000137713|P30154-3|PPP2R1B	MULTI-MSMS	A375_MHC_IP_R1	1	379.30596923828125	3	378.905977	1133.6961	0.33382	0.00012649	-0.83761	-0.00031738	-0.50379	-0.00019089	378.90587393249126	73.673	0.60835	73.673	73.386	73.995	0					27	11	3	0	0	0	0.066859	2	26831	26831;26873		57.722	53.778	1	5752100			62935	14629	45946	46303	61282;61283	61282					0.1346006254175336
YFVPLVKRL	9	Unmodified	_YFVPLVKRL_					0	0	0		nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B	nc|ENSG00000137713|P30154-3|PPP2R1B	nc|ENSG00000137713|P30154-3|PPP2R1B	MULTI-MSMS	A375_MHC_IP_R2	2	379.6399230957031	3	378.905977	1133.6961	-0.0093508	-3.5431E-06	-0.76676	-0.00029053	-0.77611	-0.00029407	378.905869640929	72.619	0.61102	73.354	73.073	73.684	0.7354					30	11	4	0	0	0	0.10622	2	27548	27548;27584		49.554	45.61	1	5497500			62936	14629	45946	46303	61284;61285	61284					0.1346006254175336
YFVSGCDMLF	10	Unmodified	_YFVSGCDMLF_					0	0	0			REV__nc|ENSG00000138802|O95487-2|SEC24B	REV__nc|ENSG00000138802|O95487-2|SEC24B	MULTI-SECPEP	A375_MHC_IP_R1	1	590.8599853515625	2	591.253928	1180.4933	-0.32141	-0.00019004	-2.1321	-0.0012606	-2.4535	-0.0014507	591.2508815483146	100.19	0.2527	100.19	100.03	100.28	0					5	4	2	0	0	0	0.92389	1	36764	36764		7.2892	4.9865	1	579940	+		62937	19125	45947	46304	61286	61286					-0.08972371637355536
YFVSSKESHSH	11	Unmodified	_YFVSSKESHSH_					0	0	0			REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	MULTI-MSMS	A375_MHC_IP_R2	2	654.7030029296875	2	654.304384	1306.59421	-1.3003	-0.00085079	-1.6687	-0.0010918	-2.969	-0.0019426	654.3037639558647	53.732	0.51448	54.483	54.198	54.712	0.75105					34	9	5	0	0	0	0.73189	1	20250	20250		7.1017	0.89594	1	19814000	+		62938	17938	45948	46305	61287	61287					-0.046818803386031504
YFVSSKESHSH	11	Unmodified	_YFVSSKESHSH_					0	0	0			REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	MULTI-MATCH	A375_MHC_IP_R1	1		2	654.304384	1306.59421	-0.35176	-0.00023016	-1.2309	-0.00080536	-1.5826	-0.0010355	654.3037144312264	54.637	0.66122	54.637	54.364	55.025	0	0.076861	0.00014938	NaN	7.1017	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16581000	+		62939	17938	45948	46305							-0.046818803386031504
YFVVFLLGF	9	Unmodified	_YFVVFLLGF_					0	0	0			REV__nc|ENSG00000162600|Q96E52-2|OMA1	REV__nc|ENSG00000162600|Q96E52-2|OMA1	MULTI-SECPEP	A375_MHC_IP_R1	1	369.60076904296875	3	368.875795	1103.60555	0.67752	0.00024992	3.1599	0.0011656	3.8374	0.0014155	368.8767188203033	48.581	0.55638	48.581	48.274	48.831	0					13	10	2	0	0	0	0.79683	1	17227	17227		1.1933	0.12188	1	1167400	+		62940	20271	45949	46306	61288	61288					0.05789593493477696
YFVVFLLGF	9	Unmodified	_YFVVFLLGF_					0	0	0			REV__nc|ENSG00000162600|Q96E52-2|OMA1	REV__nc|ENSG00000162600|Q96E52-2|OMA1	MULTI-MATCH	A375_MHC_IP_R2	2		3	368.875795	1103.60555	0.38588	0.00014234	2.6498	0.00097745	3.0357	0.0011198	368.8767078089989	47.628	0.25613	48.389	48.275	48.532	0.76128	-0.095734	-2.6904E-05	NaN	1.1933	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1781200	+		62941	20271	45949	46306							0.05789593493477696
YFVYDRQEEK	10	Unmodified	_YFVYDRQEEK_					0	0	0			REV__ENST00000482199.5_1_7:100883089-100884880:-|nuORF	REV__ENST00000482199.5_1_7:100883089-100884880:-|nuORF	MSMS	A375_MHC_IP_R1	1	459.6285400390625	3	459.55422	1375.64083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.549	1	63.549	63.049	64.049	0								0	0	0	0.14953	1	22972	22972		18.721	5.1064	1		+		62942	22649	45950	46307	61289	61289					-0.0319644050732677
YFVYDRQEEK	10	Unmodified	_YFVYDRQEEK_					0	0	0			REV__ENST00000482199.5_1_7:100883089-100884880:-|nuORF	REV__ENST00000482199.5_1_7:100883089-100884880:-|nuORF	MSMS	A375_MHC_IP_R2	2	459.6279296875	3	459.55422	1375.64083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.846	1	63.589	63.089	64.089	0.74263								0	0	0	0.14685	1	23825	23825		23.801	4.6571	1		+		62943	22649	45950	46307	61290	61290					-0.0319644050732677
YFWDVWYIYHF	11	Unmodified	_YFWDVWYIYHF_					0	0	0		ENSG00000196664|ENST00000380659|TLR7	ENSG00000196664|ENST00000380659|TLR7	ENSG00000196664|ENST00000380659|TLR7	MSMS	A375_MHC_IP_R1	1	819.9672241210938	2	819.874445	1637.73434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.17	1	115.17	114.67	115.67	0								0	0	0	0.16353	1	42233	42233		0.35063	0	1				62944	9073	45951	46308	61291	61291					-0.05902096334239104
YFWEHFDKDGW	11	Unmodified	_YFWEHFDKDGW_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MSMS	A375_MHC_IP_R1	1	510.45147705078125	3	510.554331	1528.64116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.399	1	54.399	53.899	54.899	0								0	0	0	0.16332	1	19421	19421		1.4551	1.0469	1				62945	9882	45952	46309	61292	61292					-0.10201020787485504
YFYICEYI	8	Unmodified	_YFYICEYI_					0	0	0		ENST00000504941.1_1_5:106762801-107006392:-|nuORF	ENST00000504941.1_1_5:106762801-107006392:-|nuORF	ENST00000504941.1_1_5:106762801-107006392:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	557.6514282226562	2	557.251711	1112.48887	-0.80036	-0.000446	-0.063715	-3.5506E-05	-0.86408	-0.00048151	557.2517451074268	74.472	0.71322	75.21	74.857	75.57	0.73752					17	13	2	0	0	0	0.94479	1	28283	28283		13.508	5.5977	1	1920200			62946	12830	45953	46310	61293	61293					-0.06287512788617278
YFYYLEGF	8	Unmodified	_YFYYLEGF_					0	0	0		SCN9A|p.S309F|1|0.3|ENSG00000169432|chr2:166294638-166294638|G/A|missense_variant	SCN9A|p.S309F|1|0.3|ENSG00000169432|chr2:166294638-166294638|G/A|missense_variant	SCN9A|p.S309F|1|0.3|ENSG00000169432|chr2:166294638-166294638|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	551.6781616210938	2	551.250026	1100.4855	-0.73365	-0.00040442	-1.9857	-0.0010946	-2.7193	-0.001499	551.7508927315511	42.123	0.56281	42.896	42.502	43.065	0.7724					14	10	2	0	0	0	0.75322	1	15682	15682		19.439	3.5918	1	2263400			62947	29119	45954	46311	61294	61294					-0.06072439570971255
YFYYVLCLRWM	11	Unmodified	_YFYYVLCLRWM_					0	0	0			REV__nc|ENSG00000159398|Q6NT32-4|CES5A	REV__nc|ENSG00000159398|Q6NT32-4|CES5A	MSMS	A375_MHC_IP_R1	1	519.6356811523438	3	519.58581	1555.7356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.73	1	100.73	100.23	101.23	0								0	0	0	0.16351	1	37023	37023		0.45452	0	1		+		62948	27312	45955	46312	61295	61295					-0.02003921561390598
YGAIVDQMTL	10	Unmodified	_YGAIVDQMTL_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1;ENST00000466794.5_1_19:12769146-12777470:-|nuORF	nc|ENSG00000104774|O00754-2|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-SECPEP	A375_MHC_IP_R1	1	555.174072265625	2	555.778625	1109.5427	-0.59834	-0.00033255	-1.0177	-0.00056562	-1.6161	-0.00089817	555.7781714265229	61.233	0.40889	61.233	60.973	61.382	0					11	7	2	0	0	0	0.85226	1	22082	22082		14.838	8.6325	1	1182100			62949	2535	45956	46313	61296	61296					-0.007693403568737267
YGAKTLAV	8	Unmodified	_YGAKTLAV_					0	0	0		PKHD1L1|p.I2287Nfs*40|1|0.62|ENSG00000205038|chr8:109454831-109454832|-/A|frameshift_variant;ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.P2274S|1|0.43|ENSG00000205038|chr8:109454798-109454798|C/T|missense_variant;PKHD1L1|p.G2286E|1|0.18|ENSG00000205038|chr8:109454835-109454835|G/A|missense_variant	PKHD1L1|p.I2287Nfs*40|1|0.62|ENSG00000205038|chr8:109454831-109454832|-/A|frameshift_variant	PKHD1L1|p.I2287Nfs*40|1|0.62|ENSG00000205038|chr8:109454831-109454832|-/A|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	412.1396484375	2	411.739628	821.464704	0.0012446	5.1245E-07	0.13142	5.4112E-05	0.13267	5.4625E-05	411.73958394767624	31.843	0.35362	32.58	32.401	32.755	0.73692					11	6	2	0	0	0	0.8824	1	11315	11315		23.148	0	1	2676200			62950	9495	45957	46314	61297	61297					0.04683014840054511
YGALLREL	8	Unmodified	_YGALLREL_					0	0	0		ENSG00000132329|ENST00000254661|RAMP1	ENSG00000132329|ENST00000254661|RAMP1	ENSG00000132329|ENST00000254661|RAMP1	MULTI-SECPEP	A375_MHC_IP_R1	1	468.1712951660156	2	467.77146	933.528367	-0.38705	-0.00018105	-0.015956	-7.4639E-06	-0.40301	-0.00018852	467.7713739600367	76.853	0.46043	76.853	76.622	77.083	0					17	8	3	0	0	0	0.92091	1	28058	28058		26.268	7.0112	1	1621100			62951	4392	45958	46315	61298	61298					0.058943752771256186
YGALLREL	8	Unmodified	_YGALLREL_					0	0	0		ENSG00000132329|ENST00000254661|RAMP1	ENSG00000132329|ENST00000254661|RAMP1	ENSG00000132329|ENST00000254661|RAMP1	MULTI-SECPEP	A375_MHC_IP_R2	2	468.130615234375	2	467.77146	933.528367	-0.62086	-0.00029042	0.58463	0.00027347	-0.036226	-1.6946E-05	467.77166998236015	75.859	0.35655	76.599	76.334	76.691	0.74052					10	6	2	0	0	0	0.85138	1	28755	28755		31.268	12.011	1	1232800			62952	4392	45958	46315	61299	61299					0.058943752771256186
YGAPLREDW	9	Unmodified	_YGAPLREDW_					0	0	0		ENSG00000165556|ENST00000381020|CDX2	ENSG00000165556|ENST00000381020|CDX2	ENSG00000165556|ENST00000381020|CDX2	MULTI-MSMS	A375_MHC_IP_R1	1	553.62060546875	2	553.766906	1105.51926	-0.55189	-0.00030562	0.12817	7.0979E-05	-0.42371	-0.00023464	553.7669342114318	74.564	1.2174	74.564	73.893	75.11	0					55	23	4	0	0	0	0.17328	1	27062	27062		39.957	2.8827	1	13964000			62953	6968	45959	46316	61300	61300					-0.029280180792056854
YGAVPRVT	8	Unmodified	_YGAVPRVT_					0	0	0			REV__ENSG00000139287|ENST00000333850|TPH2	REV__ENSG00000139287|ENST00000333850|TPH2	MULTI-SECPEP	A375_MHC_IP_R1	1	432.14239501953125	2	431.742702	861.470852	-0.15166	-6.5476E-05	-0.044981	-1.942E-05	-0.19664	-8.4897E-05	431.74260438199775	25.229	0.60997	25.229	25.104	25.714	0					27	11	3	0	0	0	0.8211	1	7333	7333		23.148	0	1	21049000	+		62954	19146	45960	46317	61301	61301					0.03457533071571106
YGCASDSV	8	Unmodified	_YGCASDSV_					0	0	0			REV__ENST00000492115.2_1_9:97041094-97054826:+|nuORF	REV__ENST00000492115.2_1_9:97041094-97054826:+|nuORF	MSMS	A375_MHC_IP_R1	1	401.1654968261719	2	401.157811	800.301069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.254	1	66.254	65.754	66.754	0								0	0	0	0.16876	1	23988	23988		5.7604	0	1		+		62955	25405	45961	46318	61302	61302					-0.1070695099316481
YGDKHITLY	9	Unmodified	_YGDKHITLY_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	A375_MHC_IP_R1	1	555.2274780273438	2	555.284931	1108.55531	-0.37778	-0.00020978	0.048977	2.7196E-05	-0.32881	-0.00018258	555.2849629455901	39.214	0.71067	39.214	38.933	39.643	0					34	13	4	0	0	0	0.043891	2	13346	13346;13361		80.676	46.574	1	40842000			62956	2857	45962	46319	61303;61304	61303					0.0053743909768400044
YGDKHITLY	9	Unmodified	_YGDKHITLY_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-SECPEP	A375_MHC_IP_R1	1	370.92584228515625	3	370.525713	1108.55531	0.48918	0.00018125	0.041321	1.5311E-05	0.5305	0.00019656	370.5256822523643	39.214	0.76123	39.214	38.983	39.744	0					39	14	4	0	0	0	0.53098	1	13358	13358		27.223	4.487	1	43419000			62957	2857	45962	46319	61305	61305					0.0053743909768400044
YGDKHITLY	9	Unmodified	_YGDKHITLY_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	A375_MHC_IP_R2	2	555.6845703125	2	555.284931	1108.55531	-1.1494	-0.00063826	0.2531	0.00014054	-0.89632	-0.00049771	555.2850445172285	38.365	0.66148	39.14	38.843	39.504	0.77451					33	12	4	0	0	0	0.032776	1	14087	14087		87.258	43.4	1	30892000			62958	2857	45962	46319	61306	61306					0.0053743909768400044
YGDKHITLY	9	Unmodified	_YGDKHITLY_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-SECPEP	A375_MHC_IP_R2	2	369.9450988769531	3	370.525713	1108.55531	-0.022119	-8.1958E-06	-0.13469	-4.9906E-05	-0.15681	-5.8102E-05	370.5256434613942	38.398	0.81477	39.173	38.843	39.658	0.77451					41	15	4	0	0	0	0.37663	1	14077	14077		43.772	18.373	1	43683000			62959	2857	45962	46319	61307	61307					0.0053743909768400044
YGDYGSNY	8	Unmodified	_YGDYGSNY_					0	0	0		HTN1|p.P44S|1|0.29|ENSG00000126550|chr4:70055525-70055525|C/T|missense_variant;ENSG00000126550|ENST00000246896|HTN1	HTN1|p.P44S|1|0.29|ENSG00000126550|chr4:70055525-70055525|C/T|missense_variant	HTN1|p.P44S|1|0.29|ENSG00000126550|chr4:70055525-70055525|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	469.6416931152344	2	469.679965	937.345377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.472	1	68.472	67.972	68.972	0								0	0	0	0.16876	1	24827	24827		11.64	2.2929	1				62960	4048	45963	46320	61308	61308					-0.12580223575332639
YGEDNYTV	8	Unmodified	_YGEDNYTV_					0	0	0			REV__tr|U7T6F8|U7T6F8_FUSNURepressorLexAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00219PE=4SV=1	REV__tr|U7T6F8|U7T6F8_FUSNURepressorLexAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00219PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	481.1022033691406	2	480.700897	959.387241	-0.37021	-0.00017796	1.0863	0.00052216	0.71604	0.0003442	480.7020746303805	57.399	0.96519	57.399	57.059	58.024	0					43	18	3	0	0	0	0.73946	3	20549	20549;20586;20660		23.148	23.148	1	10859000	+		62961	28859	45964	46321	61309;61310;61311	61309					-0.09407667886807758
YGEDNYTV	8	Unmodified	_YGEDNYTV_					0	0	0			REV__tr|U7T6F8|U7T6F8_FUSNURepressorLexAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00219PE=4SV=1	REV__tr|U7T6F8|U7T6F8_FUSNURepressorLexAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00219PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	481.1017150878906	2	480.700897	959.387241	-0.96845	-0.00046554	1.1238	0.00054021	0.15536	7.468E-05	480.7019890716074	56.616	0.81594	57.366	57.051	57.867	0.75015					35	15	3	0	0	0	0.73946	3	21374	21374;21478;21494		23.148	23.148	1	16409000	+		62962	28859	45964	46321	61312;61313;61314	61312					-0.09407667886807758
YGEDNYTV	8	Unmodified	_YGEDNYTV_					0	0	0			REV__tr|U7T6F8|U7T6F8_FUSNURepressorLexAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00219PE=4SV=1	REV__tr|U7T6F8|U7T6F8_FUSNURepressorLexAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00219PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	481.1593017578125	2	480.700897	959.387241	-0.96845	-0.00046554	1.1238	0.00054021	0.15536	7.468E-05	480.7019890716074	56.616	0.81594	57.366	57.051	57.867	0.75015					35	15	3	0	0	0	0.92636	1	21478	21478		23.148	23.148	1	16409000	+		62963	28859	45964	46321	61315	61315					-0.09407667886807758
YGEETNSCGY	10	Unmodified	_YGEETNSCGY_					0	0	0			REV__FBN2|p.G2715E|1|0.44|ENSG00000138829|chr5:128263473-128263473|C/T|missense_variant	REV__FBN2|p.G2715E|1|0.44|ENSG00000138829|chr5:128263473-128263473|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	562.1068725585938	2	561.705854	1121.39715	-0.40791	-0.00022913	2.1359	0.0011997	1.728	0.0009706	561.7076690779061	47.505	0.659	47.505	47.211	47.87	0					25	10	3	0	0	0	0.48529	2	16707	16707;16735		29.082	0	1	3946900	+		62964	26619	45965	46322	61316;61317	61316					-0.1586884794371599
YGEHKGTTLA	10	Unmodified	_YGEHKGTTLA_					0	0	0			REV__ENST00000471517.5_1_19:38845366-38853372:+|nuORF	REV__ENST00000471517.5_1_19:38845366-38853372:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	539.1720581054688	2	538.772188	1075.52982	-0.32649	-0.00017591	-0.24218	-0.00013048	-0.56867	-0.00030638	538.7722392798981	44.478	0.91908	44.478	43.959	44.878	0					31	17	3	0	0	0	0.77204	1	15514	15514		21.537	21.537	1	3161300	+		62965	17019	45966	46323	61318	61318					-0.004920354247587966
YGEHKGTTLA	10	Unmodified	_YGEHKGTTLA_					0	0	0			REV__ENST00000471517.5_1_19:38845366-38853372:+|nuORF	REV__ENST00000471517.5_1_19:38845366-38853372:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	539.1712646484375	2	538.772188	1075.52982	-1.0112	-0.0005448	0.0096215	5.1838E-06	-1.0016	-0.00053962	538.772202643172	54.897	2.1857	55.648	54.763	56.949	0.75075					94	42	3	0	0	0	0.50967	1	20773	20773		27.629	0	1	12911000	+		62966	17019	45966	46323	61319	61319					-0.004920354247587966
YGEHKGTTLA	10	Unmodified	_YGEHKGTTLA_					0	0	0			REV__ENST00000471517.5_1_19:38845366-38853372:+|nuORF	REV__ENST00000471517.5_1_19:38845366-38853372:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	539.1715698242188	2	538.772188	1075.52982	-0.67358	-0.00036291	-0.10019	-5.3979E-05	-0.77377	-0.00041689	538.7722836307955	43.734	0.75867	44.503	43.973	44.732	0.7691					37	14	4	0	0	0	0.8125	1	16242	16242		24.021	24.021	1	3367900	+		62967	17019	45966	46323	61320	61320					-0.004920354247587966
YGEKAYKKY	9	Unmodified	_YGEKAYKKY_					0	0	0		tr|U7SL56|U7SL56_FUSNUtriphosphoribosyl-dephospho-CoAsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01989PE=4SV=1	tr|U7SL56|U7SL56_FUSNUtriphosphoribosyl-dephospho-CoAsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01989PE=4SV=1	tr|U7SL56|U7SL56_FUSNUtriphosphoribosyl-dephospho-CoAsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01989PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	575.166259765625	2	575.300581	1148.58661	-0.34204	-0.00019678	-2.9009	-0.0016689	-3.243	-0.0018657	575.2984819564944	50.532	0.35487	51.286	51.057	51.412	0.75406					9	6	2	0	0	0	0.75466	1	19031	19031		7.9102	0	1	1185800			62968	29493	45967	46324	61321	61321					0.018260121317553057
YGEKDSPASW	10	Unmodified	_YGEKDSPASW_					0	0	0			REV__ENST00000557159.5_1_14:20924026-20925664:+|nuORF	REV__ENST00000557159.5_1_14:20924026-20925664:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	570.6679077148438	2	570.253828	1138.4931	-0.35309	-0.00020135	-0.48422	-0.00027613	-0.83731	-0.00047748	570.2533119598324	58.234	0.8631	58.234	57.873	58.736	0					26	16	3	0	0	0	0.60608	1	20988	20988		20.415	5.1661	1	1546800	+		62969	17123	45968	46325	61322	61322					-0.07060332041328365
YGEMMFSL	8	Unmodified	_YGEMMFSL_					0	0	0			REV__ENST00000514029.5_1_X:66900703-66914561:+|nuORF	REV__ENST00000514029.5_1_X:66900703-66914561:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	489.1600036621094	2	489.208989	976.403426	-0.3451	-0.00016882	0.48874	0.0002391	0.14365	7.0274E-05	489.2091998487313	31.338	1.2165	31.338	30.653	31.87	0					41	23	2	0	0	0	0.7479	1	10027	10027		20.871	3.9289	1	4220200	+		62970	25645	45969	46326	61323	61323					-0.08572001245909178
YGEPNIEVPV	10	Unmodified	_YGEPNIEVPV_					0	0	0			REV__BCAM|p.M198I|1|0.27|ENSG00000187244|chr19:44813339-44813339|G/A|missense_variant	REV__BCAM|p.M198I|1|0.27|ENSG00000187244|chr19:44813339-44813339|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	372.30133056640625	3	372.85724	1115.54989	0.30156	0.00011244	-0.71178	-0.00026539	-0.41022	-0.00015295	372.8576588941651	34.165	0.55565	34.165	33.798	34.353	0					13	10	2	0	0	0	0.94311	1	11139	11139		0.15932	0	1	1542200	+		62971	15499	45970	46327	61324	61324					-0.0032628448482228123
YGEPPLQCL	9	Unmodified	_YGEPPLQCL_					0	0	0			REV__nc|ENSG00000120899|Q14289-2|PTK2B;REV__ENST00000522245.1_1_8:27311571-27312006:+|nuORF	REV__nc|ENSG00000120899|Q14289-2|PTK2B	MULTI-SECPEP	A375_MHC_IP_R1	1	510.64715576171875	2	510.24696	1018.47937	-0.30981	-0.00015808	-0.74097	-0.00037808	-1.0508	-0.00053615	510.24680704953994	20.626	0.71525	20.626	20.18	20.895	0					22	13	3	0	0	0	0.71541	1	5312	5312		7.2892	0	1	1929100	+		62972	18139;25728	45971	46328	61325	61325					-0.02913281074131646
YGESHPLKY	9	Unmodified	_YGESHPLKY_					0	0	0			REV__ENSG00000132464|ENST00000396073|ENAM	REV__ENSG00000132464|ENST00000396073|ENAM	MULTI-MSMS	A375_MHC_IP_R2	2	547.6690063476562	2	547.269281	1092.52401	-0.87562	-0.0004792	0.73851	0.00040416	-0.13711	-7.5035E-05	547.2697036306532	62.483	0.76025	63.226	62.874	63.634	0.74263					20	14	2	0	0	0	0.4867	1	23705	23705		20.454	1.1966	1	1557700	+		62973	18654	45972	46329	61326	61326					-0.018551339364194064
YGESNMALY	9	Unmodified	_YGESNMALY_					0	0	0			REV__nc|ENSG00000129682|Q92913-2|FGF13	REV__nc|ENSG00000129682|Q92913-2|FGF13	MSMS	A375_MHC_IP_R2	2	524.1369018554688	2	524.226225	1046.4379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.167	1	97.923	97.423	98.423	0.75586								0	0	0	0.1521	1	36882	36882		18.135	3.2967	1		+		62974	18507	45973	46330	61327	61327					-0.08346461833457397
YGEYCECYYS	10	Unmodified	_YGEYCECYYS_					0	0	0			REV__MATN3|p.H330Y|1|0.18|ENSG00000132031|chr2:20002009-20002009|G/A|missense_variant	REV__MATN3|p.H330Y|1|0.18|ENSG00000132031|chr2:20002009-20002009|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	640.6172485351562	2	640.21774	1278.42093	-0.76022	-0.0004867	-0.16507	-0.00010568	-0.92529	-0.00059239	640.217926830051	94.516	1.5241	94.516	94.09	95.614	0					94	29	5	0	0	0	0.57505	2	34653	34653;34705		22.736	2.3217	1	67867000	+		62975	26992	45974	46331	61328;61329	61328					-0.20714750501565504
YGEYCECYYS	10	Unmodified	_YGEYCECYYS_					0	0	0			REV__MATN3|p.H330Y|1|0.18|ENSG00000132031|chr2:20002009-20002009|G/A|missense_variant	REV__MATN3|p.H330Y|1|0.18|ENSG00000132031|chr2:20002009-20002009|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	639.6842041015625	2	640.21774	1278.42093	-0.76022	-0.0004867	-0.16507	-0.00010568	-0.92529	-0.00059239	640.217926830051	94.516	1.5241	94.516	94.09	95.614	0					94	29	5	0	0	0	0.64716	1	34739	34739		36.127	3.8215	1	67867000	+		62976	26992	45974	46331	61330	61330					-0.20714750501565504
YGEYCECYYS	10	Unmodified	_YGEYCECYYS_					0	0	0			REV__MATN3|p.H330Y|1|0.18|ENSG00000132031|chr2:20002009-20002009|G/A|missense_variant	REV__MATN3|p.H330Y|1|0.18|ENSG00000132031|chr2:20002009-20002009|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	640.21774	1278.42093	-0.561	-0.00035916	-0.36599	-0.00023431	-0.92699	-0.00059348	640.2177773567837	94	1.5683	94.744	94.262	95.83	0.74473	0.11413	-0.00014483	NaN	22.736	98	30	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67985000	+		62977	26992	45974	46331							-0.20714750501565504
YGFARNDTV	9	Unmodified	_YGFARNDTV_					0	0	0			REV__nc|ENSG00000153071|P98082-2|DAB2	REV__nc|ENSG00000153071|P98082-2|DAB2	MSMS	A375_MHC_IP_R2	2	521.687255859375	2	521.751256	1041.48796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.646	1	46.411	45.911	46.911	0.76519								0	0	0	0.1535	1	17069	17069		15.847	1.0089	1		+		62978	19826	45975	46332	61331	61331					-0.03112591113290364
YGFKSTTDT	9	Unmodified	_YGFKSTTDT_					0	0	0			REV__ENST00000437106.1_1_21:37541270-37541486:-|nuORF	REV__ENST00000437106.1_1_21:37541270-37541486:-|nuORF	MSMS	A375_MHC_IP_R2	2	510.1458740234375	2	510.237647	1018.46074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.465	1	91.2	90.7	91.7	0.7345								0	0	0	0.15283	1	34421	34421		16.942	2.104	1		+		62979	24772	45976	46333	61332	61332					-0.047751194443321765
YGFQVHPFY	9	Unmodified	_YGFQVHPFY_					0	0	0		ENSG00000182963|ENST00000592524|GJC1	ENSG00000182963|ENST00000592524|GJC1	ENSG00000182963|ENST00000592524|GJC1	MULTI-MSMS	A375_MHC_IP_R1	1	579.672119140625	2	579.274367	1156.53418	-0.010886	-6.306E-06	1.5409	0.00089262	1.53	0.00088631	579.2718850965891	35.496	0.66278	35.496	35.167	35.83	0					28	12	4	0	0	0	0.43185	1	11906	11906		23.148	10.617	1	2845000			62980	8451	45977	46334	61333	61333					-0.03782526211170989
YGFRIWLSR	9	Unmodified	_YGFRIWLSR_					0	0	0			REV__nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	REV__nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-SECPEP	A375_MHC_IP_R1	1	400.2893371582031	3	399.889097	1196.64546	-0.25322	-0.00010126	1.146	0.00045828	0.89281	0.00035702	399.8894673643425	73.868	0.50596	73.868	73.589	74.095	0					17	9	2	0	0	0	0.73363	1	26929	26929		10.8	1.2555	1	3219500	+		62981	19620	45978	46335	61334	61334					0.055005332167411325
YGFSCSSDEL	10	Unmodified	_YGFSCSSDEL_					0	0	0		ENSG00000108679|ENST00000262776|LGALS3BP;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENSG00000108679|ENST00000262776|LGALS3BP;ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENSG00000108679|ENST00000262776|LGALS3BP	MSMS	A375_MHC_IP_R2	2	554.20751953125	2	554.218597	1106.42264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.839	1	89.571	89.071	90.071	0.7318								0	0	0	0.15283	1	33811	33811		11.64	3.047	1				62982	2829;13730	45979	46336	61335	61335					-0.1263137342129994
YGGDDCAE	8	Unmodified	_YGGDDCAE_					0	0	0		ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	MULTI-MSMS	A375_MHC_IP_R1	1	830.6666259765625	1	829.266875	828.259598	-0.55766	-0.00046245	-1.6501	-0.0013684	-2.2078	-0.0018308	829.2665376736253	17.178	0.22518	17.178	17.106	17.331	0					43	28	2	0	0	0	0.77861	1	4016	4016		0	0	1	188100			62983	4954	45980	46337	61336	61336					-0.1614013175250193
YGGDDCAE	8	Unmodified	_YGGDDCAE_					0	0	0		ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	MSMS	A375_MHC_IP_R1	1	415.1728820800781	2	415.137076	828.259598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.643	1	63.643	63.143	64.143	0								0	0	0	0.16876	1	23010	23010		0	0	1				62984	4954	45980	46337	61337	61337					-0.1614013175250193
YGGDDCAE	8	Unmodified	_YGGDDCAE_					0	0	0		ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	MULTI-MSMS	A375_MHC_IP_R2	2	830.665771484375	1	829.266875	828.259598	-1.0404	-0.00086277	-1.6211	-0.0013443	-2.6615	-0.0022071	829.2665961700702	15.781	0.15343	16.368	16.299	16.452	0.58774					41	22	2	0	0	0	0.77861	1	4710	4710		0	0	1	140300			62985	4954	45980	46337	61338	61338					-0.1614013175250193
YGGDDCAE	8	Unmodified	_YGGDDCAE_					0	0	0		ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	MULTI-MSMS	A375_MHC_IP_R2	2	829.6663818359375	1	829.266875	828.259598	-1.0408	-0.00086308	-1.3774	-0.0011423	-2.4182	-0.0020053	829.2665514064757	16.01	0.20228	16.598	16.439	16.641	0.58774					39	27	2	0	0	0	0.77861	1	4772	4772		0	0	1	176810			62986	4954	45980	46337	61339	61339					-0.1614013175250193
YGGDDCAE	8	Unmodified	_YGGDDCAE_					0	0	0		ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	MULTI-MSMS	A375_MHC_IP_R2	2	830.6668701171875	1	829.266875	828.259598	-1.0405	-0.00086287	-1.3291	-0.0011022	-2.3697	-0.0019651	829.2666260331257	18.237	0.3938	18.84	18.648	19.042	0.60308					64	40	2	0	0	0	0.77861	2	5407	5407;5415		0	0	1	188830			62987	4954	45980	46337	61340;61341	61340					-0.1614013175250193
YGGDDCAE	8	Unmodified	_YGGDDCAE_					0	0	0		ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	829.266875	828.259598	-0.55759	-0.00046239	-1.8647	-0.0015464	-2.4223	-0.0020087	829.266311003274	16.853	0.20247	16.853	16.805	17.008	0	0.12767	-0.00017678	NaN	0	51	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245370			62988	4954	45980	46337							-0.1614013175250193
YGGDDCAE	8	Unmodified	_YGGDDCAE_					0	0	0		ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	MULTI-MATCH	A375_MHC_IP_R1	1		1	829.266875	828.259598	-0.55768	-0.00046246	-1.4106	-0.0011697	-1.9682	-0.0016322	829.2667168215756	16.741	0.17302	16.741	16.645	16.818	0	0.18636	8.4596E-05	NaN	0	43	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234860			62989	4954	45980	46337							-0.1614013175250193
YGGGCDDV	8	Unmodified	_YGGGCDDV_					0	0	0			REV__HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	REV__HERC2|p.V4646Pfs*61|1|0.43|ENSG00000128731|chr15:28113657-28113658|-/TGCTCATCAAATTCGGT|frameshift_variant	MSMS	A375_MHC_IP_R2	2	393.1304626464844	2	393.142161	784.269769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.055	1	92.794	92.294	93.294	0.73902								0	0	0	0.16876	1	35010	35010		2.8892	0	1		+		62990	18467	45981	46338	61342	61342					-0.13099524027268217
YGGHEQLSY	9	Unmodified	_YGGHEQLSY_					0	0	0		ENST00000367435.3_1_1:193111137-193117036:+|nuORF	ENST00000367435.3_1_1:193111137-193117036:+|nuORF	ENST00000367435.3_1_1:193111137-193117036:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	527.1483764648438	2	527.235439	1052.45632	-0.46184	-0.0002435	-2.284	-0.0012042	-2.7459	-0.0014477	527.2340887360823	50.94	0.35479	50.94	50.713	51.068	0					8	6	2	0	0	0	0.63811	1	18087	18087		12.532	1.7076	1	614220			62991	11089	45982	46339	61343	61343					-0.06780583867225687
YGGPKSFTGQ	10	Unmodified	_YGGPKSFTGQ_					0	0	0			REV__ENSG00000162645|ENST00000370466|GBP2	REV__ENSG00000162645|ENST00000370466|GBP2	MULTI-MSMS	A375_MHC_IP_R2	2	521.6530151367188	2	521.253631	1040.49271	-1.0838	-0.00056495	0.047347	2.468E-05	-1.0365	-0.00054027	521.2536915342808	37.354	0.46001	38.125	37.867	38.327	0.7709					15	8	2	0	0	0	0.47255	1	13655	13655		29.841	4.4413	1	3514800	+		62992	20285	45983	46340	61344	61344					-0.025917069705201357
YGGPKSFTGQ	10	Unmodified	_YGGPKSFTGQ_					0	0	0			REV__ENSG00000162645|ENST00000370466|GBP2	REV__ENSG00000162645|ENST00000370466|GBP2	MULTI-MATCH	A375_MHC_IP_R1	1		2	521.253631	1040.49271	-0.81559	-0.00042513	0.15833	8.2532E-05	-0.65725	-0.0003426	521.2535975819392	38.123	0.45694	38.123	37.862	38.319	0	-0.00072452	4.1236E-05	NaN	29.841	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4088600	+		62993	20285	45983	46340							-0.025917069705201357
YGGPKSFTGQ	10	Unmodified	_YGGPKSFTGQ_					0	0	0			REV__ENSG00000162645|ENST00000370466|GBP2	REV__ENSG00000162645|ENST00000370466|GBP2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	521.253631	1040.49271	-1.0838	-0.00056495	0.047347	2.468E-05	-1.0365	-0.00054027	521.2536915342808	37.354	0.46001	38.125	37.867	38.327	0.7709	0.00072452	-7.4468E-05	NaN	29.841	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3514800	+		62994	20285	45983	46340							-0.025917069705201357
YGGPTYYMEKG	11	Unmodified	_YGGPTYYMEKG_					0	0	0		tr|U7T6J7|U7T6J7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00264PE=3SV=1	tr|U7T6J7|U7T6J7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00264PE=3SV=1	tr|U7T6J7|U7T6J7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00264PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	423.2559814453125	3	422.521751	1264.54342	-0.1797	-7.5929E-05	-1.0674	-0.00045098	-1.2471	-0.00052691	422.85617748996896	32.617	0.50797	33.354	33.061	33.569	0.73692					15	9	2	0	0	0	0.97182	1	11579	11579		11.065	0	1	4454400			62995	30048	45984	46341	61345	61345					-0.07826545707848709
YGGQTWHE	8	Unmodified	_YGGQTWHE_					0	0	0		ENSG00000183386|ENST00000373016|FHL3	ENSG00000183386|ENST00000373016|FHL3	ENSG00000183386|ENST00000373016|FHL3	MULTI-MSMS	A375_MHC_IP_R2	2	489.1597900390625	2	489.209224	976.403895	-0.58384	-0.00028562	0.0013395	6.5531E-07	-0.5825	-0.00028496	489.2092123712994	30.587	1.0114	31.305	30.86	31.872	0.71857					36	19	2	0	0	0	0.75805	1	10742	10742		18.135	2.2878	1	3481700			62996	8490	45985	46342	61346	61346					-0.08525122210187419
YGIKDLATV	9	Unmodified	_YGIKDLATV_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-SECPEP	A375_MHC_IP_R1	1	490.6763000488281	2	490.276575	978.538597	-0.14944	-7.3268E-05	-0.8081	-0.00039619	-0.95755	-0.00046946	490.276300437581	72.397	0.71008	72.397	72.069	72.779	0					20	13	2	0	0	0	0.36673	1	26358	26358		45.74	9.6129	1	7139800			62997	1428	45986	46343	61347	61347					0.048469382116991255
YGIKDLATV	9	Unmodified	_YGIKDLATV_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	A375_MHC_IP_R2	2	490.7007751464844	2	490.276575	978.538597	-0.85769	-0.0004205	-0.22684	-0.00011121	-1.0845	-0.00053172	490.27650572110934	71.687	0.659	72.421	72.01	72.669	0.7342					19	12	2	0	0	0	0.0099737	1	27208	27208		96.367	33.794	1	6182700			62998	1428	45986	46343	61348	61348					0.048469382116991255
YGINNIREL	9	Unmodified	_YGINNIREL_					0	0	0		ENSG00000179115|ENST00000314606|FARSA;nc|ENSG00000179115|Q9Y285-2|FARSA	ENSG00000179115|ENST00000314606|FARSA	ENSG00000179115|ENST00000314606|FARSA	MULTI-SECPEP	A375_MHC_IP_R2	2	546.1358642578125	2	546.29583	1090.57711	-0.97982	-0.00053527	-0.1454	-7.9434E-05	-1.1252	-0.00061471	546.2956283314903	65.69	0.45667	66.428	66.172	66.629	0.73811					21	8	3	0	0	0	0.20059	1	24909	24909		51.415	20.779	1	3420700			62999	8205	45987	46344	61349	61349					0.03544243846226891
YGIRELDQKTW	11	Unmodified	_YGIRELDQKTW_					0	0	0		ENSG00000218739|ENST00000402297|CEBPZOS	ENSG00000218739|ENST00000402297|CEBPZOS	ENSG00000218739|ENST00000402297|CEBPZOS	MULTI-MSMS	A375_MHC_IP_R1	1	470.6453857421875	3	470.245498	1407.71466	-0.38251	-0.00017988	0.014294	6.7217E-06	-0.36822	-0.00017315	470.24547385746007	57.862	0.76003	57.862	57.568	58.328	0					38	14	4	0	0	0	0.0014335	1	20739	20739		98.811	85.955	1	19636000			63000	9656	45988	46345	61350	61350					0.02711527654969359
YGIRELDQKTW	11	Unmodified	_YGIRELDQKTW_					0	0	0		ENSG00000218739|ENST00000402297|CEBPZOS	ENSG00000218739|ENST00000402297|CEBPZOS	ENSG00000218739|ENST00000402297|CEBPZOS	MULTI-MSMS	A375_MHC_IP_R1	1	705.2650146484375	2	704.864608	1407.71466	-0.61485	-0.00043339	0.1902	0.00013407	-0.42465	-0.00029932	704.8648150085152	57.809	0.40569	57.809	57.618	58.024	0					19	7	4	0	0	0	0.18032	1	20770	20770		66.683	50.534	1	3842700			63001	9656	45988	46345	61351	61351					0.02711527654969359
YGIRELDQKTW	11	Unmodified	_YGIRELDQKTW_					0	0	0		ENSG00000218739|ENST00000402297|CEBPZOS	ENSG00000218739|ENST00000402297|CEBPZOS	ENSG00000218739|ENST00000402297|CEBPZOS	MULTI-MSMS	A375_MHC_IP_R2	2	470.9794006347656	3	470.245498	1407.71466	-0.99035	-0.00046571	0.19031	8.949E-05	-0.80005	-0.00037622	470.2455696622886	57.193	0.76434	57.943	57.612	58.376	0.75015					38	14	4	0	0	0	0.10773	1	21567	21567		68.563	56.336	1	22739000			63002	9656	45988	46345	61352	61352					0.02711527654969359
YGIRELDQKTW	11	Unmodified	_YGIRELDQKTW_					0	0	0		ENSG00000218739|ENST00000402297|CEBPZOS	ENSG00000218739|ENST00000402297|CEBPZOS	ENSG00000218739|ENST00000402297|CEBPZOS	MULTI-MSMS	A375_MHC_IP_R2	2	705.26416015625	2	704.864608	1407.71466	-1.1174	-0.0007876	0.26631	0.00018771	-0.85106	-0.00059989	704.864825775864	57.159	0.40842	57.909	57.662	58.071	0.75015					16	7	3	0	0	0	0.097571	1	21598	21598		74.772	58.623	1	4795300			63003	9656	45988	46345	61353	61353					0.02711527654969359
YGKFPYTQF	9	Unmodified	_YGKFPYTQF_					0	0	0		ENST00000341633.9_2_16:3551012-3554804:+|nuORF	ENST00000341633.9_2_16:3551012-3554804:+|nuORF	ENST00000341633.9_2_16:3551012-3554804:+|nuORF	MSMS	A375_MHC_IP_R2	2	575.6806030273438	2	575.782025	1149.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.827	1	67.563	67.063	68.063	0.73631								0	0	0	0.15486	1	25317	25317		10.824	0	1				63004	10871	45989	46346	61354	61354					-0.01929659414008711
YGKLEPFLV	9	Unmodified	_YGKLEPFLV_					0	0	0			REV__ENSG00000158486|ENST00000698260|DNAH3	REV__ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	A375_MHC_IP_R1	1	533.3713989257812	2	533.302593	1064.59063	-0.91138	-0.00048604	0.98669	0.0005262	0.075305	4.016E-05	533.3035196507337	133.69	1.1152	133.69	133.51	134.62	0					27	21	2	0	0	0	0.68046	1	51642	51642		8.7454	0.83525	1	16484000	+		63005	20079	45990	46347	61355	61355					0.06092101625449686
YGKLESLSI	9	Unmodified	_YGKLESLSI_					0	0	0		nc|ENSG00000115239|Q9Y575-2|ASB3;ENSG00000115239|ENST00000263634|ASB3;nc|ENSG00000115239|Q9Y575-3|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	MULTI-MSMS	A375_MHC_IP_R1	1	505.6817932128906	2	505.281857	1008.54916	-0.38445	-0.00019426	0.58463	0.00029541	0.20018	0.00010115	505.28211057146245	64.147	0.55629	64.147	63.837	64.393	0					23	10	3	0	0	0	0.040308	1	23198	23198		68.081	5.508	1	2078700			63006	3287	45991	46348	61356	61356					0.0452292086615671
YGKLESLSI	9	Unmodified	_YGKLESLSI_					0	0	0		nc|ENSG00000115239|Q9Y575-2|ASB3;ENSG00000115239|ENST00000263634|ASB3;nc|ENSG00000115239|Q9Y575-3|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	MULTI-MSMS	A375_MHC_IP_R2	2	505.68157958984375	2	505.281857	1008.54916	-0.65339	-0.00033015	0.352	0.00017786	-0.30139	-0.00015229	505.28202773844896	63.314	0.60944	64.054	63.632	64.241	0.74022					20	11	3	0	0	0	0.10411	1	24012	24012		49.933	2.1843	1	2348100			63007	3287	45991	46348	61357	61357					0.0452292086615671
YGKMSSCNC	9	Unmodified	_YGKMSSCNC_					0	0	0		ENST00000557481.6_1_15:94410235-94442550:-|nuORF	ENST00000557481.6_1_15:94410235-94442550:-|nuORF	ENST00000557481.6_1_15:94410235-94442550:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	497.0860290527344	2	496.685355	991.356158	-0.37556	-0.00018654	0.68048	0.00033798	0.30492	0.00015145	496.686264378464	46.331	0.60965	47.096	46.755	47.364	0.76519					25	11	3	0	0	0	0.63811	1	17336	17336		12.532	0	1	3204500			63008	13452	45992	46349	61358	61358					-0.13986603788555385
YGKMSSCNC	9	Unmodified	_YGKMSSCNC_					0	0	0		ENST00000557481.6_1_15:94410235-94442550:-|nuORF	ENST00000557481.6_1_15:94410235-94442550:-|nuORF	ENST00000557481.6_1_15:94410235-94442550:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	496.685355	991.356158	-0.37556	-0.00018654	0.68048	0.00033798	0.30492	0.00015145	496.686264378464	46.331	0.60965	47.096	46.755	47.364	0.76519	0.075551	-0.00030382	NaN	12.532	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3204500			63009	13452	45992	46349							-0.13986603788555385
YGLALPQQK	9	Unmodified	_YGLALPQQK_					0	0	0			REV__ENSG00000123066|ENST00000281928|MED13L	REV__ENSG00000123066|ENST00000281928|MED13L	MULTI-SECPEP	A375_MHC_IP_R1	1	508.71148681640625	2	509.290017	1016.56548	-0.66662	-0.0003395	0.69038	0.0003516	0.023754	1.2098E-05	509.2902065290584	66.81	0.81725	66.81	66.428	67.245	0					20	15	2	0	0	0	0.75466	1	24277	24277		7.9102	0	1	1369600	+		63010	18229	45993	46350	61359	61359					0.057860468229023354
YGLLQVFFH	9	Unmodified	_YGLLQVFFH_					0	0	0		ENST00000502886.1_1_5:64747273-64747992:-|nuORF	ENST00000502886.1_1_5:64747273-64747992:-|nuORF	ENST00000502886.1_1_5:64747273-64747992:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	562.4943237304688	2	562.300384	1122.58622	-0.35014	-0.00019688	-2.4074	-0.0013537	-2.7576	-0.0015506	562.8016821810608	96.994	0.80956	96.994	96.68	97.49	0					38	15	4	0	0	0	0.48581	1	35717	35717		32.117	8.9685	1	1509000			63011	12800	45994	46351	61360	61360					0.029826372025581804
YGLPVVVKL	9	Unmodified	_YGLPVVVKL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-SECPEP	A375_MHC_IP_R1	1	494.7154846191406	2	494.315503	986.616454	-0.30547	-0.000151	-0.36356	-0.00017972	-0.66904	-0.00033072	494.3152475744487	102.03	0.8092	102.03	101.7	102.51	0					35	15	4	0	0	0	0.07754	1	37452	37452		74.423	47.539	1	7438000			63012	7257	45995	46352	61361	61361					0.12260995867757174
YGLPVVVKL	9	Unmodified	_YGLPVVVKL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	A375_MHC_IP_R2	2	494.71490478515625	2	494.315503	986.616454	-0.35443	-0.0001752	0.51763	0.00025587	0.1632	8.0675E-05	494.31558687865925	101.01	0.61472	101.78	101.5	102.11	0.76428					30	11	4	0	0	0	0.018481	1	38277	38277		85.357	58.473	1	7756100			63013	7257	45995	46352	61362	61362					0.12260995867757174
YGLSPVAR	8	Unmodified	_YGLSPVAR_					0	0	0			REV__nc|ENSG00000188493|Q5BKX5-2|ACTMAP	REV__nc|ENSG00000188493|Q5BKX5-2|ACTMAP	MULTI-MSMS	A375_MHC_IP_R2	2	432.1419982910156	2	431.742702	861.470852	-0.60869	-0.0002628	-0.039102	-1.6882E-05	-0.64779	-0.00027968	431.74262024314226	24.594	0.7617	25.237	25.06	25.822	0.64368					33	14	3	0	0	0	0.69583	1	8113	8113		36.044	0	1	23661000	+		63014	22093	45996	46353	61363	61363					0.034575330715597374
YGLTCLYTLYW	11	Unmodified	_YGLTCLYTLYW_					0	0	0		ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171488|ENST00000370454|LRRC8C	MULTI-MSMS	A375_MHC_IP_R1	1	466.2931823730469	3	465.893297	1394.65806	0.025978	1.2103E-05	-0.045059	-2.0993E-05	-0.019081	-8.8897E-06	465.893178132383	22.899	0.6558	22.899	22.52	23.176	0					27	12	4	0	0	0	0.72851	1	6183	6183		10.315	0	1	8991400			63015	7607	45997	46354	61364	61364					-0.023482362258619105
YGLTCLYTLYW	11	Unmodified	_YGLTCLYTLYW_					0	0	0		ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171488|ENST00000370454|LRRC8C	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	465.893297	1394.65806	0.025978	1.2103E-05	-0.045059	-2.0993E-05	-0.019081	-8.8897E-06	465.893178132383	22.899	0.6558	22.899	22.52	23.176	0	0	0	NaN	10.315	27	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8991400			63016	7607	45997	46354							-0.023482362258619105
YGLWNKTV	8	Unmodified	_YGLWNKTV_					0	0	0		nc|ENSG00000143147|Q8N6U8-3|GPR161;nc|ENSG00000143147|Q8N6U8-2|GPR161;nc|ENSG00000143147|Q8N6U8-5|GPR161;ENST00000493800.1_1_1:168059784-168074118:-|nuORF;nc|ENSG00000143147|Q8N6U8-4|GPR161;ENSG00000143147|ENST00000682931|GPR161;nc|ENSG00000143147|Q8N6U8-6|GPR161	nc|ENSG00000143147|Q8N6U8-3|GPR161	nc|ENSG00000143147|Q8N6U8-3|GPR161	MSMS	A375_MHC_IP_R1	1	490.6763000488281	2	490.763635	979.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.448	1	72.448	71.948	72.948	0								0	0	0	0.16876	1	26358	26358		19.439	0	1				63017	5348	45998	46355	61365	61365					0.022140887600812675
YGLWQSLL	8	Unmodified	_YGLWQSLL_					0	0	0			REV__ENST00000528813.1_1_11:56099435-56099735:-|nuORF	REV__ENST00000528813.1_1_11:56099435-56099735:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	489.6204528808594	2	490.26601	978.517468	-0.10715	-5.2531E-05	0.4125	0.00020224	0.30535	0.0001497	490.2658962739184	93.048	0.5094	93.048	92.769	93.279	0					15	9	2	0	0	0	0.97144	1	34276	34276		9.3474	0	1	1140700	+		63018	25810	45999	46356	61366	61366					0.027349729028628644
YGMAALLFF	9	Unmodified	_YGMAALLFF_					0	0	0			REV__OR10K1|p.S112F|1|0.36|ENSG00000173285|chr1:158465896-158465896|C/T|missense_variant	REV__OR10K1|p.S112F|1|0.36|ENSG00000173285|chr1:158465896-158465896|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	516.697021484375	2	516.764789	1031.51502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.694	1	54.445	53.945	54.945	0.75105								0	0	0	0.15427	1	20272	20272		14.582	1.0738	1		+		63019	27650	46000	46357	61367	61367					0.0005280117354686809
YGMKSLVRY	9	Unmodified	_YGMKSLVRY_					0	0	0			REV__ENSG00000162104|ENST00000294016|ADCY9	REV__ENSG00000162104|ENST00000294016|ADCY9	MULTI-SECPEP	A375_MHC_IP_R1	1	372.6018371582031	3	372.867193	1115.57975	0.29522	0.00011008	1.2393	0.00046209	1.5345	0.00057217	372.8665965364746	42.057	0.15028	42.057	41.932	42.082	0					4	2	2	0	0	0	0.81122	1	14558	14558		0	0	1	621720	+		63020	20234	46001	46358	61368	61368					0.026583759795585138
YGNAREFDF	9	Unmodified	_YGNAREFDF_					0	0	0		ENST00000396522.6_1_14:21967741-21972178:-|nuORF	ENST00000396522.6_1_14:21967741-21972178:-|nuORF	ENST00000396522.6_1_14:21967741-21972178:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	559.140869140625	2	559.748713	1117.48287	-0.79307	-0.00044392	0.43007	0.00024073	-0.363	-0.00020319	559.7488639849656	48.902	0.96521	49.66	49.332	50.297	0.75737					41	18	4	0	0	0	0.58047	1	18366	18366		15.847	1.0089	1	6588900			63021	11492	46002	46359	61369	61369					-0.07116894975911237
YGNEDEDSFC	10	Unmodified	_YGNEDEDSFC_					0	0	0		ENSG00000111667|ENST00000229268|USP5	ENSG00000111667|ENST00000229268|USP5	ENSG00000111667|ENST00000229268|USP5	MULTI-MSMS	A375_MHC_IP_R1	1	589.865966796875	2	589.700768	1177.38698	-0.23171	-0.00013664	1.3896	0.00081947	1.1579	0.00068283	589.7022003787853	97.453	0.8624	97.453	97.137	97.999	0					38	16	4	0	0	0	0.70496	1	35841	35841		10.074	0.6908	1	3763400			63022	3010	46003	46360	61370	61370					-0.19461455668965755
YGNELCLRQS	10	Unmodified	_YGNELCLRQS_					0	0	0		KRT24|p.E235G|1|0.09|ENSG00000167916|chr17:40701291-40701291|T/C|missense_variant	KRT24|p.E235G|1|0.09|ENSG00000167916|chr17:40701291-40701291|T/C|missense_variant	KRT24|p.E235G|1|0.09|ENSG00000167916|chr17:40701291-40701291|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	591.6819458007812	2	591.78223	1181.54991	-0.45664	-0.00027023	2.5002	0.0014795	2.0435	0.0012093	591.7836888700402	46.379	0.55931	47.144	46.805	47.364	0.76519					13	10	2	0	0	0	0.66308	1	17418	17418		16.149	0.90062	1	1361300			63023	14233	46004	46361	61371	61371					-0.033606077564854786
YGNFKEEFRL	10	Unmodified	_YGNFKEEFRL_					0	0	0			REV__tr|U7STZ8|U7STZ8_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01045PE=4SV=1	REV__tr|U7STZ8|U7STZ8_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01045PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	434.67431640625	3	434.887422	1301.64044	-0.4406	-0.00019161	3.5608	0.0015485	3.1202	0.0013569	435.22307487112914	66.176	0.25505	66.914	66.782	67.037	0.73811					6	4	2	0	0	0	0.94421	1	25038	25038		0.13989	0	1	964810	+		63024	28522	46005	46362	61372	61372					0.001681845634493584
YGNIYKPL	8	Unmodified	_YGNIYKPL_					0	0	0			REV__tr|U7SNT9|U7SNT9_FUSNUPglDN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01948PE=4SV=1	REV__tr|U7SNT9|U7SNT9_FUSNUPglDN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01948PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	484.64019775390625	2	484.26601	966.517468	-0.31173	-0.00015096	-0.14569	-7.0552E-05	-0.45742	-0.00022151	484.266060968624	60.724	0.50882	60.724	60.464	60.973	0					12	9	2	0	0	0	0.94479	1	21921	21921		19.439	2.3524	1	1587800	+		63025	28341	46006	46363	61373	61373					0.03286972902856178
YGNNKPVK	8	Unmodified	_YGNNKPVK_					0	0	0		ENSG00000100312|ENST00000216139|ACR	ENSG00000100312|ENST00000216139|ACR	ENSG00000100312|ENST00000216139|ACR	MULTI-SECPEP	A375_MHC_IP_R1	1	459.87420654296875	2	460.253434	918.492316	-0.38041	-0.00017508	0.38459	0.00017701	0.0041824	1.925E-06	460.25392924918435	65.913	1.118	65.913	65.055	66.173	0					23	21	2	0	0	0	0.972	1	23934	23934		13.508	7.7475	1	1022900			63026	2157	46007	46364	61374	61374					0.029809181002860896
YGNQKRDYH	9	Unmodified	_YGNQKRDYH_					0	0	0			REV__ENST00000487216.1_1_19:21416232-21416373:+|nuORF	REV__ENST00000487216.1_1_19:21416232-21416373:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	591.6821899414062	2	590.778336	1179.54212	-0.92837	-0.00054846	2.6301	0.0015538	1.7017	0.0010053	591.2824279172601	59.78	0.70926	60.527	60.299	61.008	0.74714					26	13	3	0	0	0	0.35581	1	22645	22645		26.884	1.4843	1	5653200	+		63027	25331	46008	46365	61375	61375					-0.04046998961712234
YGNTLVEFR	9	Unmodified	_YGNTLVEFR_					0	0	0		nc|ENSG00000162745|Q68BL8-2|OLFML2B;ENSG00000162745|ENST00000294794|OLFML2B	nc|ENSG00000162745|Q68BL8-2|OLFML2B	nc|ENSG00000162745|Q68BL8-2|OLFML2B	MULTI-SECPEP	A375_MHC_IP_R1	1	550.1821899414062	2	549.782556	1097.55056	-0.44429	-0.00024427	0.16759	9.2139E-05	-0.2767	-0.00015213	549.7825283963467	51.143	0.71012	51.143	50.864	51.575	0					21	13	2	0	0	0	0.50484	1	18198	18198		34.932	7.3033	1	1736900			63028	6587	46009	46366	61376	61376					0.005685549549070856
YGNTLVEFR	9	Unmodified	_YGNTLVEFR_					0	0	0		nc|ENSG00000162745|Q68BL8-2|OLFML2B;ENSG00000162745|ENST00000294794|OLFML2B	nc|ENSG00000162745|Q68BL8-2|OLFML2B	nc|ENSG00000162745|Q68BL8-2|OLFML2B	MULTI-SECPEP	A375_MHC_IP_R2	2	550.1819458007812	2	549.782556	1097.55056	-1.0535	-0.00057919	0.11329	6.2286E-05	-0.94019	-0.0005169	549.782656345428	51.595	1.7768	52.347	51.813	53.59	0.75225					46	34	2	0	0	0	0.24324	1	19473	19473		53.833	3.8998	1	2690500			63029	6587	46009	46366	61377	61377					0.005685549549070856
YGNVTSLGY	9	Unmodified	_YGNVTSLGY_					0	0	0		nc|ENSG00000186448|O14709-2|ZNF197	nc|ENSG00000186448|O14709-2|ZNF197	nc|ENSG00000186448|O14709-2|ZNF197	MULTI-MSMS	A375_MHC_IP_R2	2	487.6341247558594	2	487.234907	972.455261	-0.49023	-0.00023886	0.01523	7.4204E-06	-0.475	-0.00023144	487.2348827519935	47.992	1.2648	48.754	48.429	49.694	0.76127					77	24	5	0	0	0	0.11296	1	17953	17953		48.346	0.75146	1	110270000			63030	14816	46010	46367	61378	61378					-0.032067982361240865
YGPHFQGI	8	Unmodified	_YGPHFQGI_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	A375_MHC_IP_R2	2	460.701904296875	2	459.727052	917.439552	-0.7954	-0.00036567	0.84863	0.00039014	0.053236	2.4474E-05	459.727047531786	59.368	0.81074	60.115	59.742	60.553	0.74714					32	15	3	0	0	0	0.77702	1	22424	22424		5.7604	0	1	1692200			63031	7431	46011	46368	61379	61379					-0.02247039962526287
YGPISLSVSF	10	Unmodified	_YGPISLSVSF_					0	0	0		FNDC1|p.P1743L|1|0.35|ENSG00000164694|chr6:159261243-159261243|C/T|missense_variant	FNDC1|p.P1743L|1|0.35|ENSG00000164694|chr6:159261243-159261243|C/T|missense_variant	FNDC1|p.P1743L|1|0.35|ENSG00000164694|chr6:159261243-159261243|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	535.1675415039062	2	535.281857	1068.54916	-0.69503	-0.00037204	0.53033	0.00028387	-0.1647	-8.8163E-05	535.2819634593544	99.092	0.50676	99.092	98.864	99.371	0					14	9	2	0	0	0	0.90853	1	36469	36469		15.847	5.0233	1	1489100			63032	14011	46012	46369	61380	61380					0.017629208661446683
YGPLPQGYK	9	Unmodified	_YGPLPQGYK_					0	0	0			REV__ENST00000460209.1_1_7:45954421-45954610:-|nuORF	REV__ENST00000460209.1_1_7:45954421-45954610:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	512.6836547851562	2	511.768917	1021.52328	-0.25807	-0.00013207	0.19721	0.00010093	-0.060859	-3.1146E-05	511.76888339552846	69.015	1.2175	69.015	68.514	69.732	0					43	23	3	0	0	0	0.58047	1	24888	24888		15.847	2.8047	1	6134600	+		63033	19546	46013	46370	61381	61381					0.013380714145114325
YGPMRHRR	8	Unmodified	_YGPMRHRR_					0	0	0			REV__ENSG00000198909|ENST00000361733|MAP3K3	REV__ENSG00000198909|ENST00000361733|MAP3K3	MSMS	A375_MHC_IP_R2	2	358.2424011230469	3	358.190893	1071.55085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.905	1	16.493	15.993	16.993	0.58774								0	0	0	0.16876	1	4732	4732		0.45834	0	1		+		63034	22444	46014	46371	61382	61382					0.017936961937721208
YGPPCSCQEV	10	Unmodified	_YGPPCSCQEV_					0	0	0			REV__ENSG00000142798|ENST00000374695|HSPG2	REV__ENSG00000142798|ENST00000374695|HSPG2	MSMS	A375_MHC_IP_R1	1	541.679931640625	2	541.71771	1081.42087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.831	1	44.831	44.331	45.331	0								0	0	0	0.15158	1	15660	15660		14.838	3.198	1		+		63035	19325	46015	46372	61383	61383					-0.11658705710920003
YGPRIGAL	8	Unmodified	_YGPRIGAL_					0	0	0		nc|ENSG00000132330|Q96I15-2|SCLY;ENSG00000132330|ENST00000254663|SCLY	nc|ENSG00000132330|Q96I15-2|SCLY	nc|ENSG00000132330|Q96I15-2|SCLY	MULTI-SECPEP	A375_MHC_IP_R1	1	424.1453552246094	2	423.745245	845.475937	-0.15829	-6.7073E-05	0.42356	0.00017948	0.26528	0.00011241	423.74536587234536	41.957	0.71062	41.957	41.725	42.436	0					31	13	3	0	0	0	0.19086	1	14480	14480		90.836	19.971	1	53617000			63036	4393	46016	46373	61384	61384					0.04701836934191306
YGPRIGAL	8	Unmodified	_YGPRIGAL_					0	0	0		nc|ENSG00000132330|Q96I15-2|SCLY;ENSG00000132330|ENST00000254663|SCLY	nc|ENSG00000132330|Q96I15-2|SCLY	nc|ENSG00000132330|Q96I15-2|SCLY	MULTI-SECPEP	A375_MHC_IP_R2	2	424.14520263671875	2	423.745245	845.475937	-0.40423	-0.00017129	0.21228	8.9954E-05	-0.19194	-8.1334E-05	423.74528386225154	41.148	0.81143	41.923	41.59	42.401	0.77451					37	15	4	0	0	0	0.15515	1	15221	15221		98.807	27.943	1	50981000			63037	4393	46016	46373	61385	61385					0.04701836934191306
YGPSGRIL	8	Unmodified	_YGPSGRIL_					0	0	0		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	MULTI-SECPEP	A375_MHC_IP_R2	2	431.2880554199219	2	431.742702	861.470852	-0.60869	-0.0002628	-0.039102	-1.6882E-05	-0.64779	-0.00027968	431.74262024314226	24.594	0.7617	25.237	25.06	25.822	0.64368					33	14	3	0	0	0	0.84748	1	8267	8267		28.487	5.3384	1	23661000			63038	5067	46017	46374	61386	61386					0.03457533071571106
YGPTSQNCEV	10	Unmodified	_YGPTSQNCEV_					0	0	0		SLC17A8|p.A550P|1|0.2|ENSG00000179520|chr12:100420037-100420037|G/C|missense_variant	SLC17A8|p.A550P|1|0.2|ENSG00000179520|chr12:100420037-100420037|G/C|missense_variant	SLC17A8|p.A550P|1|0.2|ENSG00000179520|chr12:100420037-100420037|G/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	549.630859375	2	549.232039	1096.44952	-0.49702	-0.00027298	-0.67107	-0.00036857	-1.1681	-0.00064156	549.2314062521627	77.693	0.56151	77.693	77.436	77.998	0					16	10	2	0	0	0	0.6806	1	28383	28383		14.838	2.3067	1	2805800			63039	29169	46018	46375	61387	61387					-0.09484264810134846
YGPVSPIIRR	10	Unmodified	_YGPVSPIIRR_					0	0	0		nc|ENSG00000168685|P16871-3|IL7R;ENST00000303115.7_1_5:35874625-35876091:+|nuORF	nc|ENSG00000168685|P16871-3|IL7R	nc|ENSG00000168685|P16871-3|IL7R	MSMS	A375_MHC_IP_R1	1	579.3678588867188	2	579.343115	1156.67168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.071	1	65.071	64.571	65.571	0								0	0	0	0.15353	1	23554	23554		9.3831	0.63772	1				63040	14756	46019	46376	61388	61388					0.09960802388241063
YGQPYSLEY	9	Unmodified	_YGQPYSLEY_					0	0	0			REV__ARHGAP44|p.G691E|1|0.35|ENSG00000006740|chr17:12984663-12984663|G/A|missense_variant	REV__ARHGAP44|p.G691E|1|0.35|ENSG00000006740|chr17:12984663-12984663|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	560.2188110351562	2	560.253297	1118.49204	-0.36911	-0.00020679	0.39945	0.00022379	0.030344	1.7001E-05	560.253326568088	88.98	0.65995	88.98	88.663	89.323	0					27	12	3	0	0	0	0.46038	1	32605	32605		21.747	2.4897	1	4247900	+		63041	15439	46020	46377	61389	61389					-0.06246546410238807
YGQPYSLEY	9	Unmodified	_YGQPYSLEY_					0	0	0			REV__ARHGAP44|p.G691E|1|0.35|ENSG00000006740|chr17:12984663-12984663|G/A|missense_variant	REV__ARHGAP44|p.G691E|1|0.35|ENSG00000006740|chr17:12984663-12984663|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	560.181640625	2	560.253297	1118.49204	-0.36911	-0.00020679	0.39945	0.00022379	0.030344	1.7001E-05	560.253326568088	88.98	0.65995	88.98	88.663	89.323	0					27	12	3	0	0	0	0.13064	1	32646	32646		47.749	7.5095	1	4247900	+		63042	15439	46020	46377	61390	61390					-0.06246546410238807
YGQSKIYNSG	10	Unmodified	_YGQSKIYNSG_					0	0	0			REV__ENSG00000062370|ENST00000354340|ZNF112	REV__ENSG00000062370|ENST00000354340|ZNF112	MULTI-MSMS	A375_MHC_IP_R2	2	559.1695556640625	2	558.769645	1115.52474	-0.61997	-0.00034642	0.21583	0.0001206	-0.40413	-0.00022582	558.7697098327967	68.272	2.9442	69.008	67.799	70.744	0.73511					77	57	2	0	0	0	0.63639	1	25992	25992		18.146	3.3081	1	2152100	+		63043	16458	46021	46378	61391	61391					-0.028403392873769917
YGQTYWDS	8	Unmodified	_YGQTYWDS_					0	0	0		PPP1R3B|p.N217Y|1|0.05|ENSG00000173281|chr8:9141003-9141003|T/A|missense_variant	PPP1R3B|p.N217Y|1|0.05|ENSG00000173281|chr8:9141003-9141003|T/A|missense_variant	PPP1R3B|p.N217Y|1|0.05|ENSG00000173281|chr8:9141003-9141003|T/A|missense_variant	MSMS	A375_MHC_IP_R2	2	510.1875915527344	2	510.208889	1018.40323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.473	1	64.213	63.713	64.713	0.74022								0	0	0	0.16876	1	24063	24063		13.508	2.684	1				63044	15216	46022	46379	61392	61392					-0.10523961649892044
YGQTYWDS	8	Unmodified	_YGQTYWDS_					0	0	0		PPP1R3B|p.N217Y|1|0.05|ENSG00000173281|chr8:9141003-9141003|T/A|missense_variant	PPP1R3B|p.N217Y|1|0.05|ENSG00000173281|chr8:9141003-9141003|T/A|missense_variant	PPP1R3B|p.N217Y|1|0.05|ENSG00000173281|chr8:9141003-9141003|T/A|missense_variant	MSMS	A375_MHC_IP_R2	2	510.1839599609375	2	510.208889	1018.40323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.854	1	64.594	64.094	65.094	0.74022								0	0	0	0.16876	1	24214	24214		13.508	0	1				63045	15216	46022	46379	61393	61393					-0.10523961649892044
YGRFGPSG	8	Unmodified	_YGRFGPSG_					0	0	0			REV__ENST00000607208.1_1_6:13318389-13321190:-|nuORF	REV__ENST00000607208.1_1_6:13318389-13321190:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	421.10369873046875	2	420.703577	839.392602	-0.12584	-5.2942E-05	0.35356	0.00014875	0.22772	9.5804E-05	420.70359519003347	27.06	0.40209	27.06	26.878	27.28	0					14	7	3	0	0	0	0.972	1	8168	8168		8.5933	0	1	3932200	+		63046	26546	46023	46380	61394	61394					-0.03351899513654644
YGRRKDRQMTN	11	Unmodified	_YGRRKDRQMTN_					0	0	0			REV__ENST00000553853.1_1_14:35297835-35331506:-|nuORF	REV__ENST00000553853.1_1_14:35297835-35331506:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	475.6600036621094	3	475.577365	1423.71026	-0.33021	-0.00015704	-0.38225	-0.00018179	-0.71246	-0.00033883	475.9114373626103	49.813	0.66401	49.813	49.54	50.204	0					16	12	2	0	0	0	0.73557	1	17629	17629		3.5927	0.52041	1	1526600	+		63047	26070	46024	46381	61395	61395					0.015357399604226885
YGRRKDRQMTN	11	Unmodified	_YGRRKDRQMTN_					0	0	0			REV__ENST00000553853.1_1_14:35297835-35331506:-|nuORF	REV__ENST00000553853.1_1_14:35297835-35331506:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	475.577365	1423.71026	-0.33021	-0.00015704	-0.38225	-0.00018179	-0.71246	-0.00033883	475.9114373626103	49.813	0.66401	49.813	49.54	50.204	0	-0.046565	6.7999E-05	NaN	3.5927	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1526600	+		63048	26070	46024	46381							0.015357399604226885
YGRVLPESL	9	Unmodified	_YGRVLPESL_					0	0	0			REV__nc|ENSG00000225697|Q9BXS9-2|SLC26A6	REV__nc|ENSG00000225697|Q9BXS9-2|SLC26A6	MULTI-MSMS	A375_MHC_IP_R2	2	517.6860961914062	2	517.287474	1032.5604	-1.0683	-0.00055264	-0.97818	-0.000506	-2.0465	-0.0010586	517.287082685323	58.506	1.1156	59.255	58.679	59.795	0.74894					50	21	3	0	0	0	0.51106	1	22066	22066		19.257	1.1106	1	11846000	+		63049	22717	46025	46382	61396	61396					0.04541742960282136
YGSEGRFTF	9	Unmodified	_YGSEGRFTF_					0	0	0		ENSG00000184840|ENST00000332598|TMED9;ENST00000513799.5_1_5:177019550-177022414:+|nuORF;ENST00000507723.1_1_5:177019275-177020791:+|nuORF;ENST00000507578.1_1_5:177019655-177021165:+|nuORF;ENST00000505521.1_1_5:177019550-177020791:+|nuORF;nc|ENSG00000158604|Q7Z7H5-3|TMED4;nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4	ENSG00000184840|ENST00000332598|TMED9;nc|ENSG00000158604|Q7Z7H5-3|TMED4	ENSG00000184840|ENST00000332598|TMED9	MULTI-MSMS	A375_MHC_IP_R1	1	531.687744140625	2	532.245806	1062.47706	-0.68375	-0.00036392	-0.18746	-9.9774E-05	-0.87121	-0.0004637	532.2458565858879	58.909	0.86485	58.909	58.481	59.346	0					41	16	4	0	0	0	0.052747	1	21123	21123		63.227	32.591	1	22356000			63050	8612;6317	46026	46383	61397	61397					-0.051679934875892286
YGSEGRFTF	9	Unmodified	_YGSEGRFTF_					0	0	0		ENSG00000184840|ENST00000332598|TMED9;ENST00000513799.5_1_5:177019550-177022414:+|nuORF;ENST00000507723.1_1_5:177019275-177020791:+|nuORF;ENST00000507578.1_1_5:177019655-177021165:+|nuORF;ENST00000505521.1_1_5:177019550-177020791:+|nuORF;nc|ENSG00000158604|Q7Z7H5-3|TMED4;nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4	ENSG00000184840|ENST00000332598|TMED9;nc|ENSG00000158604|Q7Z7H5-3|TMED4	ENSG00000184840|ENST00000332598|TMED9	MULTI-MSMS	A375_MHC_IP_R2	2	532.6453247070312	2	532.245806	1062.47706	-0.96615	-0.00051423	-0.19117	-0.00010175	-1.1573	-0.00061598	532.2458523938589	58.072	0.96264	58.82	58.477	59.44	0.74894					45	18	4	0	0	0	0.017012	1	21921	21921		87.258	47.301	1	21127000			63051	8612;6317	46026	46383	61398	61398					-0.051679934875892286
YGSILMSEM	9	Unmodified	_YGSILMSEM_					0	0	0			REV__ENSG00000120438|ENST00000321394|TCP1	REV__ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	A375_MHC_IP_R1	1	516.1324462890625	2	515.732828	1029.4511	-0.76813	-0.00039615	0.37666	0.00019426	-0.39146	-0.00020189	515.733026621579	27.031	0.9581	27.031	26.373	27.331	0					34	18	2	0	0	0	0.43185	1	8059	8059		23.148	0	1	4461900	+		63052	18122	46027	46384	61399	61399					-0.062443470457083095
YGSINHTYHLD	11	Unmodified	_YGSINHTYHLD_					0	0	0		nc|ENSG00000066468|P21802-16|FGFR2;nc|ENSG00000066468|P21802-8|FGFR2;nc|ENSG00000066468|P21802-3|FGFR2;ENSG00000066468|ENST00000358487|FGFR2;nc|ENSG00000066468|P21802-18|FGFR2;nc|ENSG00000066468|P21802-5|FGFR2;nc|ENSG00000066468|P21802-6|FGFR2;nc|ENSG00000066468|P21802-17|FGFR2;nc|ENSG00000066468|P21802-2|FGFR2;nc|ENSG00000066468|P21802-23|FGFR2;nc|ENSG00000066468|P21802-21|FGFR2;nc|ENSG00000066468|P21802-15|FGFR2;nc|ENSG00000066468|P21802-20|FGFR2;nc|ENSG00000066468|P21802-4|FGFR2;nc|ENSG00000066468|P21802-22|FGFR2;nc|ENSG00000066468|P21802-14|FGFR2;nc|ENSG00000066468|P21802-19|FGFR2	nc|ENSG00000066468|P21802-16|FGFR2	nc|ENSG00000066468|P21802-16|FGFR2	MULTI-SECPEP	A375_MHC_IP_R1	1	439.9378662109375	3	440.538681	1318.59421	-0.26931	-0.00011864	1.9587	0.00086288	1.6894	0.00074424	440.53943384998155	19.394	0.15259	19.394	19.318	19.471	0					4	2	2	0	0	0	0.99921	1	4700	4700		0.45452	0	1	1486700			63053	1413	46028	46385	61400	61400					-0.05233880338619201
YGSMYSEAQY	10	Unmodified	_YGSMYSEAQY_					0	0	0			REV__ENST00000483075.1_1_7:14014577-14028701:-|nuORF	REV__ENST00000483075.1_1_7:14014577-14028701:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	599.6790771484375	2	599.739696	1197.46484	-0.58342	-0.0003499	-1.4664	-0.00087948	-2.0499	-0.0012294	599.7395129645606	81.831	0.25315	82.574	82.431	82.684	0.74293					6	4	2	0	0	0	0.69833	1	31076	31076		13.042	3.6593	1	2630700	+		63054	25288	46029	46386	61401	61401					-0.12599398012935126
YGSPFLVYWFA	11	Unmodified	_YGSPFLVYWFA_					0	0	0		ENST00000383693.7_1_3:100121009-100121117:+|nuORF	ENST00000383693.7_1_3:100121009-100121117:+|nuORF	ENST00000383693.7_1_3:100121009-100121117:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	450.9565124511719	3	450.557013	1348.64921	-0.31723	-0.00014293	-0.76859	-0.0003463	-1.0858	-0.00048923	450.5566371914856	19.415	0.38484	19.415	19.238	19.623	0					15	7	3	0	0	0	0.73658	1	4862	4862		2.6312	0.70373	1	4367700			63055	11390	46030	46387	61402	61402					-0.01116841800057955
YGSRCCYSL	9	Unmodified	_YGSRCCYSL_					0	0	0		KRTAP13-4|p.G106E|1|0.27|ENSG00000186971|chr21:30430592-30430592|G/A|missense_variant;ENSG00000186971|ENST00000334068|KRTAP13-4	KRTAP13-4|p.G106E|1|0.27|ENSG00000186971|chr21:30430592-30430592|G/A|missense_variant	KRTAP13-4|p.G106E|1|0.27|ENSG00000186971|chr21:30430592-30430592|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	526.619140625	2	526.22042	1050.42629	-0.66801	-0.00035152	-0.89499	-0.00047096	-1.563	-0.00082248	526.2196295837022	62.068	0.70912	62.811	62.471	63.18	0.74263					27	13	3	0	0	0	0.60101	1	23526	23526		14.838	0	1	3843500			63056	8794	46031	46388	61403	61403					-0.09690982128449832
YGSRSSNPY	9	Unmodified	_YGSRSSNPY_					0	0	0		nc|ENSG00000239961|P59901-2|LILRA4;ENSG00000239961|ENST00000291759|LILRA4	nc|ENSG00000239961|P59901-2|LILRA4	nc|ENSG00000239961|P59901-2|LILRA4	MULTI-MSMS	A375_MHC_IP_R2	2	515.6929321289062	2	515.733063	1029.45157	-1.1612	-0.00059887	0.17481	9.0155E-05	-0.9864	-0.00050872	515.7331435181245	26.423	1.119	27.083	26.347	27.466	0.65992					30	21	2	0	0	0	0.35581	1	8912	8912		26.884	3.7352	1	3578100			63057	9770	46032	46389	61404	61404					-0.06197468009986551
YGSRSSNPY	9	Unmodified	_YGSRSSNPY_					0	0	0		nc|ENSG00000239961|P59901-2|LILRA4;ENSG00000239961|ENST00000291759|LILRA4	nc|ENSG00000239961|P59901-2|LILRA4	nc|ENSG00000239961|P59901-2|LILRA4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	515.733063	1029.45157	-1.1612	-0.00059887	0.17481	9.0155E-05	-0.9864	-0.00050872	515.7331435181245	26.423	1.119	27.083	26.347	27.466	0.65992	0.025789	0.00013492	NaN	26.884	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3578100			63058	9770	46032	46389							-0.06197468009986551
YGSRYKWEY	9	Unmodified	_YGSRYKWEY_					0	0	0		ENSG00000197579|ENST00000360538|TOPORS;nc|ENSG00000197579|Q9NS56-2|TOPORS	ENSG00000197579|ENST00000360538|TOPORS	ENSG00000197579|ENST00000360538|TOPORS	MSMS	A375_MHC_IP_R2	2	626.027587890625	2	626.293288	1250.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.299	1	72.033	71.533	72.533	0.73421								0	0	0	0.15486	1	27045	27045		10.824	0.75	1				63059	9172	46033	46390	61405	61405					-0.04324060016369913
YGSSHYCEY	9	Unmodified	_YGSSHYCEY_					0	0	0		nc|ENSG00000049192|Q9UKP5-2|ADAMTS6	nc|ENSG00000049192|Q9UKP5-2|ADAMTS6	nc|ENSG00000049192|Q9UKP5-2|ADAMTS6	MSMS	A375_MHC_IP_R2	2	554.6868286132812	2	554.705657	1107.39676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.492	1	67.228	66.728	67.728	0.73631								0	0	0	0.14905	1	25191	25191		23.148	8.5667	1				63060	14465	46034	46391	61406	61406					-0.1526422287290643
YGSTGIRDV	9	Unmodified	_YGSTGIRDV_					0	0	0		nc|ENSG00000125779|Q9BZ23-3|PANK2;ENSG00000125779|ENST00000610179|PANK2;nc|ENSG00000125779|Q9BZ23|PANK2;ENST00000495692.5_1_20:3869620-3891228:+|nuORF;ENSG00000120137|ENST00000239231|PANK3	nc|ENSG00000125779|Q9BZ23-3|PANK2	nc|ENSG00000125779|Q9BZ23-3|PANK2	MULTI-MSMS	A375_MHC_IP_R1	1	484.65789794921875	2	484.245806	966.47706	-0.62947	-0.00030482	0.021845	1.0578E-05	-0.60762	-0.00029424	484.2457301030079	30.341	0.30233	30.341	30.2	30.503	0					7	5	2	0	0	0	0.12748	2	9622	9622;9686		45.74	11.338	1	1534300			63061	3988	46035	46392	61407;61408	61407					-0.007519934875631407
YGTNLRAPINE	11	Unmodified	_YGTNLRAPINE_					0	0	0			REV__tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	REV__tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	624.7225341796875	2	624.322576	1246.6306	-0.46575	-0.00029078	-0.17251	-0.0001077	-0.63826	-0.00039848	624.3226175869892	55.641	1.6768	55.641	54.771	56.447	0					57	32	3	0	0	0	0.65093	2	19847	19847;20082		19.362	9.2114	1	3479500	+		63062	28672	46036	46393	61409;61410	61409					0.01714996558121129
YGTNLRAPINE	11	Unmodified	_YGTNLRAPINE_					0	0	0			REV__tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	REV__tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	624.722412109375	2	624.322576	1246.6306	-0.84284	-0.00052621	0.29034	0.00018126	-0.55251	-0.00034494	624.3227368385075	67.387	0.76464	67.387	66.99	67.754	0					24	14	3	0	0	0	0.88813	1	24463	24463		24.991	13.496	1	2405700	+		63063	28672	46036	46393	61411	61411					0.01714996558121129
YGTNLRAPINE	11	Unmodified	_YGTNLRAPINE_					0	0	0			REV__tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	REV__tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	624.7225341796875	2	624.322576	1246.6306	-0.46575	-0.00029078	-0.17251	-0.0001077	-0.63826	-0.00039848	624.3226175869892	55.641	1.6768	55.641	54.771	56.447	0					57	32	3	0	0	0	0.9574	1	19847	19847		19.362	19.362	1	3479500	+		63064	28672	46036	46393	61412	61412					0.01714996558121129
YGTNLRAPINE	11	Unmodified	_YGTNLRAPINE_					0	0	0			REV__tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	REV__tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	624.7108154296875	2	624.322576	1246.6306	-0.92712	-0.00057882	0.34045	0.00021255	-0.58667	-0.00036627	624.3228442151977	54.911	1.2701	55.662	55.118	56.388	0.75075					45	24	4	0	0	0	0.57844	1	20664	20664		24.991	11.948	1	3919600	+		63065	28672	46036	46393	61413	61413					0.01714996558121129
YGTNLRAPINE	11	Unmodified	_YGTNLRAPINE_					0	0	0			REV__tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	REV__tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	624.7218017578125	2	624.322576	1246.6306	-0.89124	-0.00055642	-0.055391	-3.4582E-05	-0.94663	-0.000591	624.3224501258251	66.536	0.61374	67.272	66.983	67.597	0.73631					17	11	2	0	0	0	0.57844	2	25224	25224;25260		24.991	11.948	1	2471300	+		63066	28672	46036	46393	61414;61415	61414					0.01714996558121129
YGTNLRAPINE	11	Unmodified	_YGTNLRAPINE_					0	0	0			REV__tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	REV__tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	624.7218017578125	2	624.322576	1246.6306	-0.89124	-0.00055642	-0.055391	-3.4582E-05	-0.94663	-0.000591	624.3224501258251	66.536	0.61374	67.272	66.983	67.597	0.73631					17	11	2	0	0	0	0.88813	1	25224	25224		24.991	12.816	1	2471300	+		63067	28672	46036	46393	61416	61416					0.01714996558121129
YGTVYQARD	9	Unmodified	_YGTVYQARD_					0	0	0		CDK4|p.K22Q|1|0.55|ENSG00000135446|chr12:57751654-57751654|T/G|missense_variant	CDK4|p.K22Q|1|0.55|ENSG00000135446|chr12:57751654-57751654|T/G|missense_variant	CDK4|p.K22Q|1|0.55|ENSG00000135446|chr12:57751654-57751654|T/G|missense_variant	MSMS	A375_MHC_IP_R1	1	536.6714477539062	2	536.756538	1071.49852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.112	1	51.112	50.612	51.612	0								0	0	0	0.14851	1	18131	18131		24.021	0.87215	1				63068	353	46037	46394	61417	61417					-0.03436608458855517
YGVCMEGS	8	Unmodified	_YGVCMEGS_					0	0	0		ENSG00000142677|ENST00000270800|IL22RA1	ENSG00000142677|ENST00000270800|IL22RA1	ENSG00000142677|ENST00000270800|IL22RA1	MSMS	A375_MHC_IP_R1	1	423.16607666015625	2	423.162039	844.309525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.219	1	57.219	56.719	57.719	0								0	0	0	0.16876	1	20519	20519		2.8892	0	1				63069	5327	46038	46395	61418	61418					-0.11885720348175255
YGVGFGDSV	9	Unmodified	_YGVGFGDSV_					0	0	0			REV__ENSG00000157184|ENST00000371486|CPT2	REV__ENSG00000157184|ENST00000371486|CPT2	MULTI-MSMS	A375_MHC_IP_R2	2	450.68157958984375	2	450.708525	899.402498	-0.61119	-0.00027547	0.96048	0.0004329	0.34929	0.00015743	450.7089713867424	52.113	1.015	52.865	52.219	53.234	0.75225					37	19	3	0	0	0	0.46038	1	19547	19547		21.747	3.6117	1	4273100	+		63070	20016	46039	46396	61419	61419					-0.05122756298942477
YGVGFGDSV	9	Unmodified	_YGVGFGDSV_					0	0	0			REV__ENSG00000157184|ENST00000371486|CPT2	REV__ENSG00000157184|ENST00000371486|CPT2	MULTI-SECPEP	A375_MHC_IP_R2	2	451.1086730957031	2	450.708525	899.402498	-0.61119	-0.00027547	0.96048	0.0004329	0.34929	0.00015743	450.7089713867424	52.113	1.015	52.865	52.219	53.234	0.75225					37	19	3	0	0	0	0.43707	1	19491	19491		15.847	15.847	1	4273100	+		63071	20016	46039	46396	61420	61420					-0.05122756298942477
YGVGFGDSV	9	Unmodified	_YGVGFGDSV_					0	0	0			REV__ENSG00000157184|ENST00000371486|CPT2	REV__ENSG00000157184|ENST00000371486|CPT2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	450.708525	899.402498	-0.27163	-0.00012243	0.93548	0.00042163	0.66385	0.0002992	450.7089775291126	52.537	1.013	52.537	52.237	53.25	0	-0.1641	-9.5623E-06	NaN	21.747	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5418800	+		63072	20016	46039	46396							-0.05122756298942477
YGVLHGMAFF	10	Unmodified	_YGVLHGMAFF_					0	0	0		ENST00000489749.1_1_2:7018228-7023923:+|nuORF	ENST00000489749.1_1_2:7018228-7023923:+|nuORF	ENST00000489749.1_1_2:7018228-7023923:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	570.6635131835938	2	571.278595	1140.54264	-0.36368	-0.00020776	1.6304	0.00093143	1.2668	0.00072367	571.2797286202009	25.565	0.35711	25.565	25.357	25.714	0					10	6	2	0	0	0	0.92051	1	7437	7437		7.9102	7.9102	1	1827600			63073	12642	46040	46397	61421	61421					-0.02201295566214867
YGVPHLLRL	9	Unmodified	_YGVPHLLRL_					0	0	0		ENST00000447135.2_1_4:174537089-174537971:-|nuORF	ENST00000447135.2_1_4:174537089-174537971:-|nuORF	ENST00000447135.2_1_4:174537089-174537971:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	533.6478881835938	2	534.321651	1066.62875	-0.60578	-0.00032368	0.3306	0.00017665	-0.27518	-0.00014704	534.3219179583036	47.357	0.35677	48.118	47.919	48.275	0.76128					11	6	2	0	0	0	0.79837	1	17687	17687		5.2307	0	1	1891500			63074	12043	46041	46398	61422	61422					0.09810032330801732
YGVSFDAPDLR	11	Unmodified	_YGVSFDAPDLR_					0	0	0			REV__ENSG00000275183|ENST00000611161|LENG9	REV__ENSG00000275183|ENST00000611161|LENG9	MULTI-MSMS	A375_MHC_IP_R2	2	620.703125	2	620.303852	1238.59315	-1.112	-0.0006898	-0.22964	-0.00014244	-1.3417	-0.00083225	620.3038583322789	59.326	0.65788	60.073	59.691	60.349	0.74714					17	12	2	0	0	0	0.72649	1	22485	22485		12.241	0	1	1429500	+		63075	22963	46042	46399	61423	61423					-0.016600947075403383
YGVYPPHLY	9	Unmodified	_YGVYPPHLY_					0	0	0			REV__ENSG00000180730|ENST00000319420|SHISA2	REV__ENSG00000180730|ENST00000319420|SHISA2	MULTI-SECPEP	A375_MHC_IP_R1	1	555.19287109375	2	554.776742	1107.53893	-0.56441	-0.00031312	-1.1941	-0.00066247	-1.7585	-0.00097559	554.7760631746036	57.791	0.65929	57.791	57.518	58.177	0					16	12	2	0	0	0	0.64653	1	20827	20827		14.582	0	1	1792900	+		63076	21620	46043	46400	61424	61424					-0.010536420684275072
YGYDNVKEY	9	Unmodified	_YGYDNVKEY_					0	0	0		ENST00000435717.1_1_7:21942594-21943829:-|nuORF;ENST00000488845.1_1_7:21941942-21945270:-|nuORF;nc|ENSG00000164649|Q96GN5-5|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;ENSG00000164649|ENST00000406877|CDCA7L	ENST00000435717.1_1_7:21942594-21943829:-|nuORF	ENST00000435717.1_1_7:21942594-21943829:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	576.2321166992188	2	575.756204	1149.49785	0.20178	0.00011618	0.1335	7.6862E-05	0.33528	0.00019304	575.7561000462732	39.041	0.35563	39.041	38.832	39.187	0					17	6	3	0	0	0	0.019126	2	13297	13297;13342		84.522	59.123	1	4422500			63077	6859	46044	46401	61425;61426	61425					-0.0709144789855145
YGYDNVKEY	9	Unmodified	_YGYDNVKEY_					0	0	0		ENST00000435717.1_1_7:21942594-21943829:-|nuORF;ENST00000488845.1_1_7:21941942-21945270:-|nuORF;nc|ENSG00000164649|Q96GN5-5|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;ENSG00000164649|ENST00000406877|CDCA7L	ENST00000435717.1_1_7:21942594-21943829:-|nuORF	ENST00000435717.1_1_7:21942594-21943829:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	576.15625	2	575.756204	1149.49785	-0.56215	-0.00032366	0.37868	0.00021803	-0.18347	-0.00010563	575.7562460331852	38.372	0.40456	39.147	38.946	39.351	0.77451					19	7	4	0	0	0	0.0095015	2	14119	14119;14192		107.56	78.482	1	5909400			63078	6859	46044	46401	61427;61428	61427					-0.0709144789855145
YGYGQSTQRG	10	Unmodified	_YGYGQSTQRG_					0	0	0		ENSG00000143520|ENST00000388718|FLG2;CON__Q5D862	ENSG00000143520|ENST00000388718|FLG2	ENSG00000143520|ENST00000388718|FLG2	MULTI-SECPEP	A375_MHC_IP_R1	1	372.6133728027344	3	372.840472	1115.49959	0.22614	8.4315E-05	-0.64024	-0.00023871	-0.4141	-0.00015439	372.8403659861439	41.932	0.40689	41.932	41.725	42.132	0					16	7	3	0	0	0	0.9269	1	14487	14487		1.7423	0	1	1449100		+	63079	622	46045	46402	61429	61429					-0.05354394089977177
YHCARHGSHD	10	Unmodified	_YHCARHGSHD_					0	0	0			REV__ENSG00000187808|ENST00000343905|SOWAHD	REV__ENSG00000187808|ENST00000343905|SOWAHD	MSMS	A375_MHC_IP_R2	2	394.7469787597656	3	394.833434	1181.47847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.101	1	18.704	18.204	19.204	0.60308								0	0	0	0.15642	1	5365	5365		0	0	1		+		63080	22051	46046	46403	61430	61430					-0.10500682670476635
YHEVQEQF	8	Unmodified	_YHEVQEQF_					0	0	0			REV__nc|ENSG00000163714|O15042-3|U2SURP	REV__nc|ENSG00000163714|O15042-3|U2SURP	MSMS	A375_MHC_IP_R2	2	540.1853637695312	2	540.243264	1078.47197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.882	1	44.651	44.151	45.151	0.7691								0	0	0	0.16876	1	16364	16364		13.508	0	1		+		63081	20403	46047	46404	61431	61431					-0.06412297350175322
YHFVRHLK	8	Unmodified	_YHFVRHLK_					0	0	0			REV__nc|ENSG00000278540|Q13085-3|ACACA	REV__nc|ENSG00000278540|Q13085-3|ACACA	MULTI-SECPEP	A375_MHC_IP_R2	2	367.96044921875	3	367.210171	1098.60868	-0.1235	-4.5349E-05	-0.61705	-0.00022659	-0.74055	-0.00027194	367.2099473535892	19.035	0.50227	19.639	19.483	19.986	0.60308					14	9	2	0	0	0	0.94479	1	5710	5710		14.838	0	1	5365800	+		63082	22979	46048	46405	61432	61432					0.06332281390814387
YHFWWHPDDEY	11	Unmodified	_YHFWWHPDDEY_					0	0	0			REV__ENSG00000122176|ENST00000354955|FMOD	REV__ENSG00000122176|ENST00000354955|FMOD	MSMS	A375_MHC_IP_R1	1	797.8903198242188	2	797.822941	1593.63133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.22	1	146.22	145.72	146.72	0								0	0	0	0.16354	1	55953	55953		0.30703	0.30703	1		+		63083	18191	46049	46406	61433	61433					-0.14174208792837817
YHGSSITIGSH	11	Unmodified	_YHGSSITIGSH_					0	0	0			REV__ENSG00000162607|ENST00000339950|USP1	REV__ENSG00000162607|ENST00000339950|USP1	MULTI-MSMS	A375_MHC_IP_R2	2	387.2561950683594	3	386.856122	1157.54654	-0.44062	-0.00017046	0.46377	0.00017941	0.023144	8.9534E-06	386.8562521152055	19.736	0.45552	20.346	20.044	20.499	0.61029					13	8	3	0	0	0	0.72949	1	6112	6112		4.7159	1.6437	1	707050	+		63084	20273	46050	46407	61434	61434					-0.02593534538800668
YHHCQTDQV	9	Unmodified	_YHHCQTDQV_					0	0	0		nc|ENSG00000169760|Q8N2Q7-2|NLGN1;ENSG00000169760|ENST00000695368|NLGN1;nc|ENSG00000169760|Q8N2Q7|NLGN1	nc|ENSG00000169760|Q8N2Q7-2|NLGN1	nc|ENSG00000169760|Q8N2Q7-2|NLGN1	MULTI-MSMS	A375_MHC_IP_R1	1	566.1375122070312	2	565.737822	1129.46109	-0.19537	-0.00011053	-0.62502	-0.0003536	-0.82039	-0.00046413	565.7371169707725	72.193	0.86008	72.193	71.765	72.625	0					47	16	5	0	0	0	0.64808	1	26229	26229		11.64	0	1	4720300			63085	7436	46051	46408	61435	61435					-0.09846022996134707
YHHYIQAAGGY	11	Unmodified	_YHHYIQAAGGY_					0	0	0		ENSG00000121270|ENST00000356608|ABCC11;nc|ENSG00000121270|Q96J66-2|ABCC11	ENSG00000121270|ENST00000356608|ABCC11	ENSG00000121270|ENST00000356608|ABCC11	MULTI-MSMS	A375_MHC_IP_R2	2	641.1987915039062	2	640.296362	1278.57817	-0.64506	-0.00041303	0.64133	0.00041064	-0.0037305	-2.3886E-06	640.2968820398052	46.262	2.3825	47.027	45.897	48.279	0.76518					128	46	4	0	0	0	0.73078	1	17638	17638		8.1555	2.4237	1	66715000			63086	3713	46052	46409	61436	61436					-0.049975417848600046
YHKAGGRSVW	10	Unmodified	_YHKAGGRSVW_					0	0	0		ENST00000513706.2_1_5:110097337-110097385:+|nuORF	ENST00000513706.2_1_5:110097337-110097385:+|nuORF	ENST00000513706.2_1_5:110097337-110097385:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	387.93682861328125	3	387.536835	1159.58868	0.41708	0.00016163	-0.14838	-5.7502E-05	0.2687	0.00010413	387.5367490734744	42.791	1.4716	42.791	42.183	43.655	0					98	28	4	0	0	0	0.50967	1	14725	14725		23.801	0	1	29060000			63087	12935	46053	46410	61437	61437					0.015264856602243526
YHKEYRQKYRT	11	Unmodified	_YHKEYRQKYRT_					0	0	0		ENST00000402913.2_1_X:26704220-26705692:+|nuORF	ENST00000402913.2_1_X:26704220-26705692:+|nuORF	ENST00000402913.2_1_X:26704220-26705692:+|nuORF	MSMS	A375_MHC_IP_R1	1	786.1964721679688	2	786.407506	1570.80046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.727	1	92.727	92.227	93.227	0								0	0	0	0.16337	1	34081	34081		1.1933	0	1				63088	11569	46054	46411	61438	61438					0.037891125604801346
YHKLEPTIGEY	11	Unmodified	_YHKLEPTIGEY_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-MSMS	A375_MHC_IP_R1	1	450.65081787109375	3	450.562715	1348.66632	-0.21208	-9.5556E-05	-1.765	-0.00079526	-1.9771	-0.00089082	450.56201532507913	28.29	0.35262	28.29	28.138	28.491	0					9	6	2	0	0	0	0.72565	1	8793	8793		7.0371	0	1	1889400	+		63089	22689	46055	46412	61439	61439					0.005930340150825941
YHLLMMFTK	9	Unmodified	_YHLLMMFTK_					0	0	0		ENSG00000173950|ENST00000310380|XXYLT1	ENSG00000173950|ENST00000310380|XXYLT1	ENSG00000173950|ENST00000310380|XXYLT1	MULTI-SECPEP	A375_MHC_IP_R1	1	395.80755615234375	3	395.204929	1182.59296	-0.28202	-0.00011146	2.5504	0.0010079	2.2684	0.00089649	395.5406508835244	23.99	0.91516	23.99	23.33	24.245	0					22	17	2	0	0	0	0.67539	1	6561	6561		15.739	10.691	1	4208000			63090	7845	46056	46413	61440	61440					0.008964907672861955
YHLNLLQY	8	Unmodified	_YHLNLLQY_					0	0	0			REV__ENSG00000100029|ENST00000354694|PES1	REV__ENSG00000100029|ENST00000354694|PES1	MSMS	A375_MHC_IP_R2	2	532.2192993164062	2	532.282192	1062.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.748	1	70.482	69.982	70.982	0.73421								0	0	0	0.16876	1	26436	26436		14.582	0	1		+		63091	17042	46057	46414	61441	61441					0.021057603058579843
YHMFRTKVHFY	11	Unmodified	_YHMFRTKVHFY_					0	0	0		ENST00000478691.5_1_1:23664326-23665089:-|nuORF;ENST00000453465.1_1_10:21915067-21915193:-|nuORF	ENST00000478691.5_1_1:23664326-23665089:-|nuORF	ENST00000478691.5_1_1:23664326-23665089:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	765.781494140625	2	764.879539	1527.74452	-0.37878	-0.00028972	0.7527	0.00057572	0.37391	0.000286	764.8800270357137	56.169	0.40572	56.169	55.941	56.347	0					18	7	3	0	0	0	0.73807	1	20131	20131		1.1933	0	1	5795700			63092	12098	46058	46415	61442	61442					0.0017618811934880796
YHQFHRFNWWH	11	Unmodified	_YHQFHRFNWWH_					0	0	0			REV__FADS3|p.H223Y|1|0.06|ENSG00000221968|chr11:61878592-61878592|G/A|missense_variant	REV__FADS3|p.H223Y|1|0.06|ENSG00000221968|chr11:61878592-61878592|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	829.3825073242188	2	829.381626	1656.7487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.65	1	142.65	142.15	143.15	0								0	0	0	0.1636	1	54733	54733		0	0	1		+		63093	26603	46059	46416	61443	61443					-0.053405863427315126
YHRILIERQ	9	Unmodified	_YHRILIERQ_					0	0	0		ENSG00000155850|ENST00000286298|SLC26A2;SLC26A2|p.K61I|1|0.2|ENSG00000155850|chr5:149977834-149977834|A/T|missense_variant	ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	MULTI-SECPEP	A375_MHC_IP_R2	2	409.6156005859375	3	409.903406	1226.68839	-0.25242	-0.00010347	-0.52325	-0.00021448	-0.77567	-0.00031795	409.9032697129889	24.188	0.2033	24.831	24.653	24.857	0.64368					5	3	2	0	0	0	0.79429	1	7893	7893		7.1017	0.47135	1	1621000			63094	6160	46060	46417	61444	61444					0.08411303274169768
YHSKSWAIEIG	11	Unmodified	_YHSKSWAIEIG_					0	0	0		THSD7B|p.H288Y|1|0.41|ENSG00000144229|chr2:137057142-137057142|C/T|missense_variant	THSD7B|p.H288Y|1|0.41|ENSG00000144229|chr2:137057142-137057142|C/T|missense_variant	THSD7B|p.H288Y|1|0.41|ENSG00000144229|chr2:137057142-137057142|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	430.7889099121094	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.95	1	143.98	143.48	144.48	0.024414								0	0	0	0.16334	1	56244	56244		0.45452	0	1				63095	29340	46061	46418	61445	61445					0.007201845634881465
YHSRRKMRKLR	11	Unmodified	_YHSRRKMRKLR_					0	0	0		ENSG00000006459|ENST00000397560|KDM7A;nc|ENSG00000006459|Q6ZMT4-2|KDM7A	ENSG00000006459|ENST00000397560|KDM7A	ENSG00000006459|ENST00000397560|KDM7A	MULTI-MSMS	A375_MHC_IP_R1	1	511.0338134765625	3	510.968527	1529.88375	-0.80632	-0.000412	0.15749	8.0475E-05	-0.64882	-0.00033153	510.96867906451695	141.69	1.4855	141.69	140.6	142.08	0					43	28	2	0	0	0	0.73924	1	54482	54482		0.094841	0	1	1175200			63096	915	46062	46419	61446	61446					0.14000570527355194
YHTLEDQALY	10	Unmodified	_YHTLEDQALY_					0	0	0		ENST00000464097.5_1_20:43249631-43251634:-|nuORF;ENST00000492931.5_1_20:43248477-43251634:-|nuORF;ENSG00000196839|ENST00000372874|ADA	ENST00000464097.5_1_20:43249631-43251634:-|nuORF	ENST00000464097.5_1_20:43249631-43251634:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	627.6456909179688	2	626.79586	1251.57717	-0.4772	-0.00029911	-0.23955	-0.00015015	-0.71675	-0.00044926	626.7958213165346	72.77	1.5685	72.77	71.615	73.184	0					53	30	3	0	0	0	0.71245	1	26109	26109		6.7232	0.99131	1	15433000			63097	9089	46063	46420	61447	61447					-0.038558009444159325
YHTRTHLPS	9	Unmodified	_YHTRTHLPS_					0	0	0			REV__ENST00000223145.9_1_7:8008821-8009403:+|nuORF	REV__ENST00000223145.9_1_7:8008821-8009403:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	556.6846923828125	2	556.285797	1110.55704	-0.83833	-0.00046635	-0.53152	-0.00029568	-1.3698	-0.00076203	556.2854846904627	38.361	0.50996	38.361	38.118	38.628	0					28	9	4	0	0	0	0.4261	1	12979	12979		37.974	1.847	1	49116000	+		63098	23057	46064	46421	61448	61448					0.00618492906278334
YHVFLYIVAV	10	Unmodified	_YHVFLYIVAV_					0	0	0		SOS2|p.S127F|1|0.35|ENSG00000100485|chr14:50199821-50199821|G/A|missense_variant	SOS2|p.S127F|1|0.35|ENSG00000100485|chr14:50199821-50199821|G/A|missense_variant	SOS2|p.S127F|1|0.35|ENSG00000100485|chr14:50199821-50199821|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	408.9652404785156	3	408.56562	1222.67503	-0.11222	-4.585E-05	-0.43902	-0.00017937	-0.55125	-0.00022522	408.5653296606754	55.406	0.71315	55.406	55.025	55.738	0					26	13	3	0	0	0	0.69947	1	19852	19852		7.1017	0	1	1522800			63099	29222	46065	46422	61449	61449					0.07260052442211418
YHVGEGRSI	9	Unmodified	_YHVGEGRSI_					0	0	0		ENST00000566056.1_1_16:30959736-30965162:+|nuORF	ENST00000566056.1_1_16:30959736-30965162:+|nuORF	ENST00000566056.1_1_16:30959736-30965162:+|nuORF	MSMS	A375_MHC_IP_R1	1	509.171630859375	2	509.259248	1016.50394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.721	1	58.721	58.221	59.221	0								0	0	0	0.14767	1	21098	21098		25.399	4.9457	1				63100	13557	46066	46423	61450	61450					-0.0036488487637598155
YHVNSSATVL	10	Unmodified	_YHVNSSATVL_					0	0	0			REV__tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	REV__tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	364.238037109375	3	364.189101	1089.54547	0.041673	1.5177E-05	0.52727	0.00019202	0.56894	0.0002072	364.1894100545618	27.406	0.50923	28.084	27.792	28.301	0.67857					14	9	2	0	0	0	0.70741	1	9400	9400		8.9762	0.23084	1	5091600	+		63101	28673	46067	46424	61451	61451					0.0042825109228488145
YHVPFGFG	8	Unmodified	_YHVPFGFG_					0	0	0		ENSG00000160882|ENST00000292427|CYP11B1	ENSG00000160882|ENST00000292427|CYP11B1	ENSG00000160882|ENST00000292427|CYP11B1	MULTI-MSMS	A375_MHC_IP_R1	1	923.8414306640625	1	923.441015	922.433738	-0.43032	-0.00039738	0.42233	0.00039	-0.0079933	-7.3813E-06	923.4415320534694	147.02	0.24835	147.02	146.91	147.16	0					53	26	3	0	0	0	0.77861	1	56203	56203		0	0	1	427890			63102	6447	46068	46425	61452	61452					-0.03058138474182215
YHVPFGFG	8	Unmodified	_YHVPFGFG_					0	0	0		ENSG00000160882|ENST00000292427|CYP11B1	ENSG00000160882|ENST00000292427|CYP11B1	ENSG00000160882|ENST00000292427|CYP11B1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	923.441015	922.433738	-0.117	-0.00010804	0.89129	0.00082305	0.77429	0.00071501	923.4417856810808	147.02	0.19183	147.04	146.97	147.16	0.019913	0.012626	0.0002324	NaN	0	38	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280660			63103	6447	46068	46425							-0.03058138474182215
YHVQGGAHPG	10	Unmodified	_YHVQGGAHPG_					0	0	0		ENST00000541763.6_1_12:109994935-109999613:-|nuORF;ENST00000540016.5_1_12:109994935-110011292:-|nuORF	ENST00000541763.6_1_12:109994935-109999613:-|nuORF	ENST00000541763.6_1_12:109994935-109999613:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1023.4556274414062	1	1022.48025	1021.47298	0.094414	9.6536E-05	0.078698	8.0467E-05	0.17311	0.000177	1022.4806739331618	88.219	0.45668	88.951	88.671	89.128	0.7318					13	8	2	0	0	0	0.71866	1	33587	33587		3.9444	3.9444	1	2568300			63104	13267	46069	46426	61453	61453					-0.03690038190620726
YHVQGGAHPG	10	Unmodified	_YHVQGGAHPG_					0	0	0		ENST00000541763.6_1_12:109994935-109999613:-|nuORF;ENST00000540016.5_1_12:109994935-110011292:-|nuORF	ENST00000541763.6_1_12:109994935-109999613:-|nuORF	ENST00000541763.6_1_12:109994935-109999613:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	1022.48025	1021.47298	0.31018	0.00031716	-0.12697	-0.00012982	0.18322	0.00018734	1022.4807851653453	88.843	0.45805	88.843	88.561	89.019	0	-0.053764	-0.00016607	NaN	3.9444	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2296900			63105	13267	46069	46426							-0.03690038190620726
YHVQGGAHPG	10	Unmodified	_YHVQGGAHPG_					0	0	0		ENST00000541763.6_1_12:109994935-109999613:-|nuORF;ENST00000540016.5_1_12:109994935-110011292:-|nuORF	ENST00000541763.6_1_12:109994935-109999613:-|nuORF	ENST00000541763.6_1_12:109994935-109999613:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	1022.48025	1021.47298	0.094414	9.6536E-05	0.078698	8.0467E-05	0.17311	0.000177	1022.4806739331618	88.219	0.45668	88.951	88.671	89.128	0.7318	0.053764	4.4222E-05	NaN	3.9444	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2568300			63106	13267	46069	46426							-0.03690038190620726
YHWWYRWWCVF	11	Unmodified	_YHWWYRWWCVF_					0	0	0			REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF	REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	866.7838745117188	2	866.387531	1730.76051	-0.76061	-0.00065899	-2.7258	-0.0023616	-3.4864	-0.0030206	866.3858667659595	29.335	0.30281	29.335	29.201	29.504	0					9	5	3	0	0	0	0.73934	1	9202	9202		0	0	1	3700500	+		63107	24479	46070	46427	61454	61454					-0.07564105643791663
YIAAFLHVL	9	Unmodified	_YIAAFLHVL_					0	0	0		ENST00000486227.5_1_X:48672769-48673201:+|nuORF;nc|ENSG00000094631|Q9UBN7-2|HDAC6;ENSG00000094631|ENST00000334136|HDAC6	ENST00000486227.5_1_X:48672769-48673201:+|nuORF	ENST00000486227.5_1_X:48672769-48673201:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	523.7037963867188	2	523.805303	1045.59605	-0.37119	-0.00019443	-0.12754	-6.6806E-05	-0.49873	-0.00026124	523.8052426240797	118.31	1.0648	118.31	117.31	118.37	0					28	20	2	0	0	0	0.71977	1	43302	43302		5.2307	0.47466	1	16997000			63108	2024	46071	46428	61455	61455					0.07507825207926544
YIAKDLMKV	9	Unmodified	_YIAKDLMKV_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-SECPEP	A375_MHC_IP_R1	1	541.209716796875	2	540.809728	1079.6049	-0.5821	-0.00031481	0.74378	0.00040225	0.16168	8.7439E-05	540.8101201199961	50.94	0.35497	50.94	50.764	51.119	0					10	6	2	0	0	0	0.67539	1	18120	18120		4.5289	0	1	2107600			63109	3579	46072	46429	61456	61456					0.06828430782093164
YIAKDLMKV	9	Unmodified	_YIAKDLMKV_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-SECPEP	A375_MHC_IP_R2	2	541.120361328125	2	540.809728	1079.6049	-1.0585	-0.00057243	-0.36344	-0.00019655	-1.4219	-0.00076898	540.8096242311859	50.107	0.45829	50.861	50.548	51.006	0.75406					12	8	2	0	0	0	0.41731	1	18815	18815		35.612	9.3441	1	1974800			63110	3579	46072	46429	61457	61457					0.06828430782093164
YIALATTAN	9	Unmodified	_YIALATTAN_					0	0	0		tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1	tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1	tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	469.6523742675781	2	469.2531	936.491647	-0.96307	-0.00045192	0.33753	0.00015839	-0.62554	-0.00029354	469.2531295423881	29.864	0.45555	30.563	30.385	30.84	0.69872					12	8	2	0	0	0	0.46038	1	10497	10497		21.747	0.20967	1	2980300			63111	29691	46073	46430	61458	61458					0.020860786605567228
YIALATTAN	9	Unmodified	_YIALATTAN_					0	0	0		tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1	tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1	tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	469.2531	936.491647	-0.65662	-0.00030812	0.012342	5.7917E-06	-0.64428	-0.00030233	469.25282451861614	30.617	0.40442	30.617	30.402	30.806	0	0.027342	-0.00017259	NaN	21.747	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1504900			63112	29691	46073	46430							0.020860786605567228
YIALATTAN	9	Unmodified	_YIALATTAN_					0	0	0		tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1	tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1	tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	469.2531	936.491647	-0.96307	-0.00045192	0.33753	0.00015839	-0.62554	-0.00029354	469.2531295423881	29.864	0.45555	30.563	30.385	30.84	0.69872	-0.027342	0.0001326	NaN	21.747	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2980300			63113	29691	46073	46430							0.020860786605567228
YIANSPYFL	9	Unmodified	_YIANSPYFL_					0	0	0			REV__ENSG00000186970|ENST00000334067|KRTAP15-1	REV__ENSG00000186970|ENST00000334067|KRTAP15-1	MULTI-MSMS	A375_MHC_IP_R1	1	545.6571655273438	2	544.276575	1086.5386	-0.54705	-0.00029775	0.12102	6.5869E-05	-0.42603	-0.00023188	544.27658035183	100.36	1.2158	100.36	99.925	101.14	0					64	23	4	0	0	0	0.60101	1	36996	36996		14.838	0.25658	1	56404000	+		63114	22000	46074	46431	61459	61459					-0.0012106178828616976
YICALSMIHLY	11	Unmodified	_YICALSMIHLY_					0	0	0			REV__nc|ENSG00000174576|Q8IUM7-3|NPAS4	REV__nc|ENSG00000174576|Q8IUM7-3|NPAS4	MSMS	A375_MHC_IP_R2	2	442.9249267578125	3	442.89101	1325.6512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.306	1	34.058	33.558	34.558	0.75225								0	0	0	0.16166	1	11921	11921		5.0475	1.2016	1		+		63115	21291	46075	46432	61460	61460					0.0014012762189850037
YICGDSSLSM	10	Unmodified	_YICGDSSLSM_					0	0	0			REV__ENSG00000130935|ENST00000253247|NOL11	REV__ENSG00000130935|ENST00000253247|NOL11	MULTI-SECPEP	A375_MHC_IP_R2	2	1075.2576904296875	1	1075.44346	1074.43618	0.15474	0.00016641	0.36018	0.00038736	0.51492	0.00055377	1075.443810451339	118.84	2.1341	119.45	118.69	120.83	0.60909					79	41	3	0	0	0	0.93615	1	45460	45460		7.2892	4.9865	1	153220000	+		63116	18572	46076	46433	61461	61461					-0.0980583891371225
YICKKKKN	8	Unmodified	_YICKKKKN_					0	0	0		ENST00000408965.3_1_8:48649556-48649625:-|nuORF	ENST00000408965.3_1_8:48649556-48649625:-|nuORF	ENST00000408965.3_1_8:48649556-48649625:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1025.49658203125	1	1024.5972	1023.58992	0.14555	0.00014913	0.68256	0.00069935	0.82811	0.00084847	1025.5985693169887	119.11	0.15138	119.11	118.98	119.13	0					6	2	3	0	0	0	0.77702	1	43982	43982		5.7604	0.52976	1	12065000			63117	11615	46077	46434	61462	61462					0.07906983704776849
YICVMLISRYP	11	Unmodified	_YICVMLISRYP_					0	0	0		ENST00000449985.6_1_17:8076712-8076766:-|nuORF	ENST00000449985.6_1_17:8076712-8076766:-|nuORF	ENST00000449985.6_1_17:8076712-8076766:-|nuORF	MSMS	A375_MHC_IP_R1	1	679.5779418945312	2	679.353976	1356.6934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.46	1	119.46	118.96	119.96	0								0	0	0	0.16051	1	44157	44157		13.906	0.86358	1				63118	12062	46078	46435	61463	61463					0.02932103030275357
YIDDTLTMV	9	Oxidation (M)	_YIDDTLTM(Oxidation (M))V_		YIDDTLTM(1)V		YIDDTLTM(97)V	0	0	1		nc|ENSG00000278311|Q9H3C7-2|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2;ENSG00000278311|ENST00000613102|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	MULTI-MSMS	A375_MHC_IP_R1	1	544.1948852539062	2	543.754815	1085.49508	-0.68455	-0.00037223	-0.1974	-0.00010734	-0.88195	-0.00047957	543.75474442656	86.497	4.6703	86.497	85.565	90.235	0					159	91	3	0	0	0	0.0094266	2	31744	31579;31744		97.075	22.652	1	8419900			63119	10036	46079	46436	61464;61465	61465		447			-0.04425039347756865
YIDDTLTMV	9	Oxidation (M)	_YIDDTLTM(Oxidation (M))V_		YIDDTLTM(1)V		YIDDTLTM(100)V	0	0	1		nc|ENSG00000278311|Q9H3C7-2|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2;ENSG00000278311|ENST00000613102|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	MULTI-MSMS	A375_MHC_IP_R2	2	543.7327270507812	2	543.754815	1085.49508	-0.68187	-0.00037077	-0.028417	-1.5452E-05	-0.71028	-0.00038622	543.7548143869227	86.251	4.616	86.984	85.879	90.495	0.733					162	90	3	0	0	0	0.0093345	4	32711	32562;32600;32711;32876		104.8	41.236	1	8319000			63120	10036	46079	46436	61466;61467;61468;61469	61468		447			-0.04425039347756865
YIDDTLTMV	9	Oxidation (M)	_YIDDTLTM(Oxidation (M))V_		YIDDTLTM(1)V		YIDDTLTM(120)V	0	0	1		nc|ENSG00000278311|Q9H3C7-2|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2;ENSG00000278311|ENST00000613102|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	MULTI-MSMS	A375_MHC_IP_R2	2	1086.9046630859375	1	1086.50235	1085.49508	0.23231	0.00025241	-0.23988	-0.00026064	-0.0075712	-8.2261E-06	1086.5020862554857	86.416	2.4369	87.149	86.236	88.673	0.73301					78	47	2	0	0	0	0.0099443	1	33314	33314		120.45	56.214	1	3633800			63121	10036	46079	46436	61470	61470		447			-0.04425039347756865
YIDDTLTMV	9	Oxidation (M)	_YIDDTLTM(Oxidation (M))V_		YIDDTLTM(1)V		YIDDTLTM(44)V	0	0	1		nc|ENSG00000278311|Q9H3C7-2|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2;ENSG00000278311|ENST00000613102|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	MULTI-MSMS	A375_MHC_IP_R2	2	544.6558837890625	2	543.754815	1085.49508	-0.76397	-0.00041541	-0.23539	-0.00012799	-0.99936	-0.00054341	543.7547736373334	104.29	0.71374	105.05	104.6	105.31	0.76308					26	13	3	0	0	0	0.13491	1	39422	39422		44.407	15.92	1	2774900			63122	10036	46079	46436	61471	61471		447			-0.04425039347756865
YIDDTLTMV	9	Oxidation (M)	_YIDDTLTM(Oxidation (M))V_		YIDDTLTM(1)V		YIDDTLTM(140)V	0	0	1		nc|ENSG00000278311|Q9H3C7-2|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2;ENSG00000278311|ENST00000613102|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	MULTI-SECPEP	A375_MHC_IP_R2	2	544.1543579101562	2	543.754815	1085.49508	-0.85937	-0.00046729	0.30277	0.00016463	-0.5566	-0.00030265	543.7550323218645	82.1	1.2169	82.843	82.381	83.598	0.74293					83	23	6	0	0	0	0.010931	1	31103	31103		139.54	8.2463	1	64574000			63123	10036	46079	46436	61472	61472		447			-0.04425039347756865
YIDDTLTMV	9	Unmodified	_YIDDTLTMV_					0	0	0		nc|ENSG00000278311|Q9H3C7-2|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2;ENSG00000278311|ENST00000613102|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	MULTI-MSMS	A375_MHC_IP_R1	1	535.7160034179688	2	535.757358	1069.50016	-0.6319	-0.00033854	0.52034	0.00027878	-0.11155	-5.9765E-05	535.7575289023629	104.97	0.76086	104.97	104.64	105.4	0					34	14	3	0	0	0	0.03063	1	38526	38526		74.423	30.016	1	10056000			63124	10036	46079	46437	61473	61473					-0.03180735485125297
YIDDTLTMV	9	Unmodified	_YIDDTLTMV_					0	0	0		nc|ENSG00000278311|Q9H3C7-2|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2;ENSG00000278311|ENST00000613102|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	MULTI-MSMS	A375_MHC_IP_R2	2	536.2164916992188	2	535.757358	1069.50016	-0.79286	-0.00042478	-0.17531	-9.3924E-05	-0.96817	-0.00051871	535.7572721868668	104.18	0.71286	104.94	104.65	105.36	0.76308					33	13	3	0	0	0	0.018481	1	39381	39381		85.357	31.781	1	9650300			63125	10036	46079	46437	61474	61474					-0.03180735485125297
YIDDVFHAL	9	Unmodified	_YIDDVFHAL_					0	0	0		nc|ENSG00000143622|Q92963-2|RIT1;ENSG00000143622|ENST00000368323|RIT1;nc|ENSG00000143622|Q92963-3|RIT1	nc|ENSG00000143622|Q92963-2|RIT1	nc|ENSG00000143622|Q92963-2|RIT1	MULTI-MSMS	A375_MHC_IP_R1	1	547.1716918945312	2	546.771657	1091.52876	-0.48949	-0.00026764	0.11752	6.4259E-05	-0.37197	-0.00020338	546.771744439133	102.68	1.0147	102.68	102.35	103.37	0					42	19	4	0	0	0	0.034481	3	37698	37698;37776;37794		71.134	42.647	1	13034000			63126	5415	46080	46438	61475;61476;61477	61475					-0.013342497936719155
YIDDVFHAL	9	Unmodified	_YIDDVFHAL_					0	0	0		nc|ENSG00000143622|Q92963-2|RIT1;ENSG00000143622|ENST00000368323|RIT1;nc|ENSG00000143622|Q92963-3|RIT1	nc|ENSG00000143622|Q92963-2|RIT1	nc|ENSG00000143622|Q92963-2|RIT1	MULTI-MSMS	A375_MHC_IP_R2	2	547.7064819335938	2	546.771657	1091.52876	-0.74265	-0.00040606	0.12676	6.9309E-05	-0.61588	-0.00033675	546.7716812141846	101.78	1.424	102.54	102.26	103.68	0.76428					54	27	3	0	0	0	0.098973	1	38626	38626		50.855	27.707	1	10296000			63127	5415	46080	46438	61478	61478					-0.013342497936719155
YIDEFQSLV	9	Unmodified	_YIDEFQSLV_					0	0	0		ENSG00000254656|ENST00000649591|RTL1	ENSG00000254656|ENST00000649591|RTL1	ENSG00000254656|ENST00000649591|RTL1	MULTI-MSMS	A375_MHC_IP_R1	1	557.6777954101562	2	557.276772	1112.53899	-0.24056	-0.00013406	0.30195	0.00016827	0.061393	3.4213E-05	557.2773384833596	116.56	0.71233	116.56	116.24	116.95	0					18	13	2	0	0	0	0.10411	1	42718	42718		49.933	6.0747	1	3671700			63128	9881	46081	46439	61479	61479					-0.012776868590890444
YIDEFQSLV	9	Unmodified	_YIDEFQSLV_					0	0	0		ENSG00000254656|ENST00000649591|RTL1	ENSG00000254656|ENST00000649591|RTL1	ENSG00000254656|ENST00000649591|RTL1	MULTI-MSMS	A375_MHC_IP_R2	2	557.6764526367188	2	557.276772	1112.53899	-0.58641	-0.00032679	0.45454	0.0002533	-0.13188	-7.3492E-05	557.2768518602754	115.69	0.55829	116.38	116.09	116.64	0.68999					14	10	2	0	0	0	0.070818	1	43637	43637		56.177	23.872	1	3348100			63129	9881	46081	46439	61480	61480					-0.012776868590890444
YIDENQDRY	9	Unmodified	_YIDENQDRY_					0	0	0		ENSG00000133313|ENST00000324262|CNDP2;ENST00000582620.5_1_18:72167208-72179735:+|nuORF;nc|ENSG00000133313|Q96KP4-2|CNDP2	ENSG00000133313|ENST00000324262|CNDP2	ENSG00000133313|ENST00000324262|CNDP2	MULTI-MSMS	A375_MHC_IP_R1	1	608.6670532226562	2	608.267467	1214.52038	-0.39603	-0.00024089	-0.068295	-4.1542E-05	-0.46432	-0.00028243	608.2674841002334	27.356	0.45499	27.356	27.179	27.634	0					22	8	3	0	0	0	0.0090873	1	8288	8288		100.71	50.776	1	12467000			63130	4502	46082	46440	61481	61481					-0.0782984850095545
YIDENQDRY	9	Unmodified	_YIDENQDRY_					0	0	0		ENSG00000133313|ENST00000324262|CNDP2;ENST00000582620.5_1_18:72167208-72179735:+|nuORF;nc|ENSG00000133313|Q96KP4-2|CNDP2	ENSG00000133313|ENST00000324262|CNDP2	ENSG00000133313|ENST00000324262|CNDP2	MULTI-MSMS	A375_MHC_IP_R2	2	608.6669311523438	2	608.267467	1214.52038	-0.66524	-0.00040464	0.21216	0.00012905	-0.45308	-0.0002756	608.2675828452141	26.827	0.46055	27.487	27.313	27.773	0.65992					23	8	4	0	0	0	0.0090873	1	9103	9103		100.71	66.307	1	12406000			63131	4502	46082	46440	61482	61482					-0.0782984850095545
YIDEQFERY	9	Unmodified	_YIDEQFERY_					0	0	0		ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENST00000484167.5_1_2:242276764-242276932:+|nuORF	ENSG00000168385|ENST00000391971|SEPTIN2	ENSG00000168385|ENST00000391971|SEPTIN2	MULTI-MSMS	A375_MHC_IP_R1	1	632.1874389648438	2	631.788035	1261.56152	-0.51804	-0.00032729	0.33992	0.00021476	-0.17812	-0.00011253	631.7881726278966	56.372	1.3733	56.372	55.991	57.364	0					91	26	5	0	0	0	0.0045836	3	20138	20138;20272;20348		135.86	97.889	1	134580000			63132	7293	46083	46441	61483;61484;61485	61483					-0.058800874614689747
YIDEQFERY	9	Unmodified	_YIDEQFERY_					0	0	0		ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENST00000484167.5_1_2:242276764-242276932:+|nuORF	ENSG00000168385|ENST00000391971|SEPTIN2	ENSG00000168385|ENST00000391971|SEPTIN2	MULTI-SECPEP	A375_MHC_IP_R2	2	632.1875610351562	2	631.788035	1261.56152	-0.92691	-0.00058561	0.37109	0.00023445	-0.55581	-0.00035116	631.7881921279374	55.763	1.2726	56.513	56.033	57.306	0.75014					83	24	5	0	0	0	0.010976	1	21013	21013		135.86	89.842	1	131920000			63133	7293	46083	46441	61486	61486					-0.058800874614689747
YIDGSNDYGS	10	Unmodified	_YIDGSNDYGS_					0	0	0		PXDNL|p.V899D|1|0.25|ENSG00000147485|chr8:51408928-51408928|A/T|missense_variant	PXDNL|p.V899D|1|0.25|ENSG00000147485|chr8:51408928-51408928|A/T|missense_variant	PXDNL|p.V899D|1|0.25|ENSG00000147485|chr8:51408928-51408928|A/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	546.119140625	2	545.719818	1089.42508	-1.1457	-0.00062525	-0.1618	-8.8299E-05	-1.3075	-0.00071355	545.7198000490655	59.932	0.60743	60.679	60.349	60.957	0.74714					24	11	3	0	0	0	0.70496	2	22689	22689;22720		10.074	4.8433	1	4147200			63134	15260	46084	46442	61487;61488	61487					-0.11605201692009359
YIDKDLEYV	9	Unmodified	_YIDKDLEYV_					0	0	0		nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;ENST00000509067.1_1_5:31409161-31409425:-|nuORF	nc|ENSG00000113360|Q9NRR4-2|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	MULTI-MSMS	A375_MHC_IP_R1	1	579.6893920898438	2	579.289879	1156.56521	-0.26752	-0.00015497	0.5294	0.00030667	0.26187	0.0001517	579.2898256538429	64.879	0.71065	64.879	64.546	65.257	0					31	13	3	0	0	0	0.094655	1	23473	23473		51.63	5.6089	1	2219500			63135	3143	46085	46443	61489	61489					-0.006814176876332567
YIDKDLEYV	9	Unmodified	_YIDKDLEYV_					0	0	0		nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;ENST00000509067.1_1_5:31409161-31409425:-|nuORF	nc|ENSG00000113360|Q9NRR4-2|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	MULTI-MSMS	A375_MHC_IP_R2	2	579.6893920898438	2	579.289879	1156.56521	-0.17764	-0.0001029	0.27635	0.00016009	0.098718	5.7187E-05	579.2895909161417	64.212	0.66177	64.952	64.648	65.31	0.74023					24	12	3	0	0	0	0.035419	1	24341	24341		70.332	26.474	1	2139800			63136	3143	46085	46443	61490	61490					-0.006814176876332567
YIDKVRFL	8	Unmodified	_YIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	A375_MHC_IP_R1	1	352.2742919921875	3	351.874565	1052.60187	-0.10196	-3.5879E-05	-0.53137	-0.00018698	-0.63334	-0.00022286	351.87436622271065	59.524	0.50771	59.524	59.194	59.701	0					20	9	3	0	0	0	0.64636	1	21402	21402		41.84	7.4379	1	3607600			63137	1093	46086	46444	61491	61491					0.07766923719623264
YIDKVRFL	8	Unmodified	_YIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	A375_MHC_IP_R1	1	527.7077026367188	2	527.30821	1052.60187	-0.49164	-0.00025925	-0.38606	-0.00020357	-0.87771	-0.00046282	527.8094708478952	59.498	0.50742	59.498	59.295	59.803	0					15	9	2	0	0	0	0.83673	1	21410	21410		39.95	9.3132	1	1381100			63138	1093	46086	46444	61492	61492					0.07766923719623264
YIDKVRFL	8	Unmodified	_YIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	A375_MHC_IP_R2	2	352.2742004394531	3	351.874565	1052.60187	-0.5581	-0.00019638	-0.099656	-3.5067E-05	-0.65776	-0.00023145	351.87445791379855	58.489	0.45907	59.238	59.032	59.491	0.74894					18	8	3	0	0	0	0.34394	1	22140	22140		49.933	15.531	1	2886800			63139	1093	46086	46444	61493	61493					0.07766923719623264
YIDPEFAED	9	Unmodified	_YIDPEFAED_					0	0	0		ENSG00000166260|ENST00000299335|COX11	ENSG00000166260|ENST00000299335|COX11	ENSG00000166260|ENST00000299335|COX11	MSMS	A375_MHC_IP_R1	1	549.684326171875	2	549.734937	1097.45532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.782	1	94.782	94.282	95.282	0								0	0	0	0.15486	1	34837	34837		11.64	1.4569	1				63140	7049	46087	46445	61494	61494					-0.08950843026809707
YIDQGRNPQLY	11	Unmodified	_YIDQGRNPQLY_					0	0	0		ENST00000503112.1_1_5:6372618-6374583:-|nuORF;ENSG00000133398|ENST00000255764|MED10	ENST00000503112.1_1_5:6372618-6374583:-|nuORF	ENST00000503112.1_1_5:6372618-6374583:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	684.2406616210938	2	683.841133	1365.66771	-0.42925	-0.00029354	-0.0056831	-3.8864E-06	-0.43493	-0.00029742	683.841083764626	45.662	0.75965	45.662	45.334	46.094	0					50	14	5	0	0	0	0.04068	1	15943	15943		89.609	50.994	1	30277000			63141	4508	46088	46446	61495	61495					-0.0004933189613893774
YIDQGRNPQLY	11	Unmodified	_YIDQGRNPQLY_					0	0	0		ENST00000503112.1_1_5:6372618-6374583:-|nuORF;ENSG00000133398|ENST00000255764|MED10	ENST00000503112.1_1_5:6372618-6374583:-|nuORF	ENST00000503112.1_1_5:6372618-6374583:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	684.2407836914062	2	683.841133	1365.66771	-0.76699	-0.0005245	-0.090214	-6.1692E-05	-0.8572	-0.00058619	683.8410138263276	44.903	0.81537	45.672	45.39	46.205	0.7691					48	15	4	0	0	0	0.019216	1	16752	16752		111.31	72.694	1	30872000			63142	4508	46088	46446	61496	61496					-0.0004933189613893774
YIDRIDEAQ	9	Unmodified	_YIDRIDEAQ_					0	0	0			REV__ENSG00000134072|ENST00000256460|CAMK1	REV__ENSG00000134072|ENST00000256460|CAMK1	MULTI-MSMS	A375_MHC_IP_R2	2	562.1749267578125	2	561.774928	1121.5353	-0.46865	-0.00026328	0.042432	2.3837E-05	-0.42622	-0.00023944	561.7752331302908	43.191	0.45587	43.963	43.674	44.13	0.7724					17	8	3	0	0	0	0.2487	1	16098	16098		34.402	5.9149	1	3910000	+		63143	18751	46089	46447	61497	61497					-0.02060356632955518
YIDSKFEDY	9	Unmodified	_YIDSKFEDY_					0	0	0		ENSG00000122545|ENST00000350320|SEPTIN7;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF;ENST00000475109.5_1_7:35903172-35919218:+|nuORF;ENST00000473201.1_1_7:35903172-35913395:+|nuORF;ENST00000449219.2_1_1:224190265-224197055:+|nuORF;ENST00000429741.5_1_7:45796578-45798731:-|nuORF;ENST00000489259.5_1_10:38674311-38691690:-|nuORF;ENST00000398921.6_1_7:45788229-45798731:-|nuORF;ENST00000428867.1_1_7:45797631-45798728:-|nuORF	ENSG00000122545|ENST00000350320|SEPTIN7	ENSG00000122545|ENST00000350320|SEPTIN7	MULTI-MSMS	A375_MHC_IP_R1	1	590.7218017578125	2	590.263862	1178.51317	-0.30143	-0.00017793	-0.01728	-1.02E-05	-0.31871	-0.00018813	590.2640155893612	54.788	0.71004	54.788	54.467	55.177	0					45	13	5	0	0	0	0.020087	1	19621	19621		83.429	41.589	1	24907000			63144	3789	46090	46448	61498	61498					-0.06894581101369113
YIDSKFEDY	9	Unmodified	_YIDSKFEDY_					0	0	0		ENSG00000122545|ENST00000350320|SEPTIN7;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF;ENST00000475109.5_1_7:35903172-35919218:+|nuORF;ENST00000473201.1_1_7:35903172-35913395:+|nuORF;ENST00000449219.2_1_1:224190265-224197055:+|nuORF;ENST00000429741.5_1_7:45796578-45798731:-|nuORF;ENST00000489259.5_1_10:38674311-38691690:-|nuORF;ENST00000398921.6_1_7:45788229-45798731:-|nuORF;ENST00000428867.1_1_7:45797631-45798728:-|nuORF	ENSG00000122545|ENST00000350320|SEPTIN7	ENSG00000122545|ENST00000350320|SEPTIN7	MULTI-MSMS	A375_MHC_IP_R2	2	590.7215576171875	2	590.263862	1178.51317	-0.85938	-0.00050726	0.40817	0.00024093	-0.45122	-0.00026634	590.2640021884018	54.19	0.91494	54.941	54.608	55.523	0.75075					35	17	3	0	0	0	0.015356	3	20436	20407;20436;20525		89.401	37.985	1	26391000			63145	3789	46090	46448	61499;61500;61501	61500					-0.06894581101369113
YIDSMKGIY	9	Unmodified	_YIDSMKGIY_					0	0	0		tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1	tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1	tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	544.6760864257812	2	545.267893	1088.52123	-0.5411	-0.00029504	-1.493	-0.0008141	-2.0341	-0.0011091	545.2666683281132	100.15	0.45419	100.15	99.825	100.28	0					12	8	2	0	0	0	0.75466	1	36811	36811		1.8442	0	1	1084700			63146	29764	46091	46449	61502	61502					-0.019487253855913877
YIDTEKKKREK	11	Unmodified	_YIDTEKKKREK_					0	0	0		nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	MULTI-MSMS	A375_MHC_IP_R2	2	719.31201171875	2	719.40664	1436.79873	-0.72233	-0.00051965	0.71649	0.00051545	-0.005839	-4.2006E-06	719.4071535868976	132.53	0.30806	132.72	132.46	132.76	0.18953					6	5	2	0	0	0	0.72949	1	52052	52052		9.3831	1.2276	1	4377500			63147	9265	46092	46450	61503	61503					0.09780058751903198
YIDTGRPNQR	10	Unmodified	_YIDTGRPNQR_					0	0	0			REV__ENSG00000060749|ENST00000650167|QSER1	REV__ENSG00000060749|ENST00000650167|QSER1	MULTI-SECPEP	A375_MHC_IP_R2	2	609.687255859375	2	610.312543	1218.61053	-0.84425	-0.00051526	-0.26377	-0.00016098	-1.108	-0.00067624	610.8141759365391	38.575	0.20253	39.349	39.25	39.453	0.77451					5	3	2	0	0	0	0.93578	1	14204	14204		10.074	2.465	1	671570	+		63148	16446	46093	46451	61504	61504					0.009972456181230882
YIEELTHYS	9	Unmodified	_YIEELTHYS_					0	0	0			REV__ENST00000495736.1_1_7:129986419-130007427:+|nuORF	REV__ENST00000495736.1_1_7:129986419-130007427:+|nuORF	MSMS	A375_MHC_IP_R2	2	577.671630859375	2	577.771854	1153.52915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.939	1	61.684	61.184	62.184	0.74503								0	0	0	0.15283	1	23083	23083		16.942	0.79319	1		+		63149	20081	46094	46452	61505	61505					-0.041468748644547304
YIEGGTASGFY	11	Unmodified	_YIEGGTASGFY_					0	0	0		FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	583.1644897460938	2	582.764029	1163.5135	-0.236	-0.00013753	0.095222	5.5492E-05	-0.14078	-8.2042E-05	582.7639090642787	73.479	0.70895	73.479	73.184	73.893	0					18	13	2	0	0	0	0.031929	1	26761	26761		103.75	69.347	1	2737300			63150	8107	46095	46453	61506	61506					-0.0617116138153051
YIEGGTASGFY	11	Unmodified	_YIEGGTASGFY_					0	0	0		FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	583.1634521484375	2	582.764029	1163.5135	-0.42652	-0.00024856	0.2569	0.00014971	-0.16962	-9.885E-05	582.7640513671004	72.923	0.55978	73.658	73.379	73.938	0.73541					19	10	2	0	0	0	0.017307	1	27667	27667		88.954	61.325	1	4847300			63151	8107	46095	46453	61507	61507					-0.0617116138153051
YIEKQLDKAF	10	Unmodified	_YIEKQLDKAF_					0	0	0			REV__ENST00000583408.5_1_17:30207568-30228646:-|nuORF	REV__ENST00000583408.5_1_17:30207568-30228646:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	419.2959899902344	3	418.895806	1253.66559	-0.055556	-2.3272E-05	0.49931	0.00020916	0.44376	0.00018589	418.8959761015243	62.818	0.80829	63.561	63.333	64.142	0.74263					29	15	4	0	0	0	0.94163	1	23836	23836		6.1918	0	1	3719300	+		63152	17548	46096	46454	61508	61508					0.048902393660455346
YIEKVVYTV	9	Unmodified	_YIEKVVYTV_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1;ENST00000472714.1_1_7:107564398-107569844:-|nuORF	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-SECPEP	A375_MHC_IP_R1	1	557.7662353515625	2	557.313158	1112.61176	-0.51822	-0.00028881	-0.29929	-0.0001668	-0.81751	-0.00045561	557.8150012449319	61.733	0.5111	61.733	61.585	62.097	0					14	9	2	0	0	0	0.44554	1	22319	22319		51.63	21.789	1	2004300			63153	1971	46097	46455	61509	61509					0.05996066934335431
YIEKVVYTV	9	Unmodified	_YIEKVVYTV_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1;ENST00000472714.1_1_7:107564398-107569844:-|nuORF	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-MATCH	A375_MHC_IP_R2	2		2	557.313158	1112.61176	-1.0661	-0.00059413	0.27001	0.00015048	-0.79606	-0.00044365	557.3132587282952	60.964	0.35473	61.709	61.464	61.819	0.74503	-0.012413	0.00014951	NaN	51.63	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1727700			63154	1971	46097	46455							0.05996066934335431
YIESDSNME	9	Unmodified	_YIESDSNME_					0	0	0			REV__ENSG00000151320|ENST00000280979|AKAP6	REV__ENSG00000151320|ENST00000280979|AKAP6	MSMS	A375_MHC_IP_R1	1	544.154052734375	2	544.216054	1086.41756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.071	1	89.071	88.571	89.571	0								0	0	0	0.15486	1	32716	32716		11.64	3.7301	1		+		63155	19747	46098	46456	61510	61510					-0.12219677283906094
YIFFKAKWKM	10	Unmodified	_YIFFKAKWKM_					0	0	0		SERPINA3|p.E218K|1|0.48|ENSG00000196136|chr14:94619203-94619203|G/A|missense_variant	SERPINA3|p.E218K|1|0.48|ENSG00000196136|chr14:94619203-94619203|G/A|missense_variant	SERPINA3|p.E218K|1|0.48|ENSG00000196136|chr14:94619203-94619203|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	681.5797729492188	2	681.375569	1360.73659	-0.87206	-0.0005942	4.3543	0.0029669	3.4822	0.0023727	681.3784365420336	132.31	0.30382	132.31	132.18	132.49	0					8	5	2	0	0	0	0.71944	1	50973	50973		3.5965	0.31518	1	2660000			63156	29135	46099	46457	61511	61511					0.07064660869855288
YIFIFPFLF	9	Unmodified	_YIFIFPFLF_					0	0	0			REV__tr|U7T3I6|U7T3I6_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00421PE=4SV=1	REV__tr|U7T3I6|U7T3I6_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00421PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	603.6682739257812	2	603.833529	1205.6525	-0.48024	-0.00028999	4.4913	0.002712	4.011	0.002422	603.8357161302868	96.334	0.20313	97.084	96.957	97.16	0.75045					5	3	2	0	0	0	0.73662	1	36550	36550		14.582	0	1	880790	+		63157	28774	46100	46458	61512	61512					0.057904530445966884
YIFNVSKG	8	Unmodified	_YIFNVSKG_					0	0	0			REV__ENST00000398868.7_1_11:63395004-63395085:-|nuORF	REV__ENST00000398868.7_1_11:63395004-63395085:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	464.65032958984375	2	464.25036	926.486168	-0.14338	-6.6565E-05	-0.22839	-0.00010603	-0.37177	-0.0001726	464.2501263609133	51.181	0.96259	51.181	50.713	51.676	0					29	18	3	0	0	0	0.71451	1	18147	18147		30.225	3.3412	1	5175800	+		63158	24379	46101	46459	61513	61513					0.01998399868773504
YIFNVSKG	8	Unmodified	_YIFNVSKG_					0	0	0			REV__ENST00000398868.7_1_11:63395004-63395085:-|nuORF	REV__ENST00000398868.7_1_11:63395004-63395085:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	464.25036	926.486168	-0.14338	-6.6565E-05	-0.22839	-0.00010603	-0.37177	-0.0001726	464.2501263609133	51.181	0.96259	51.181	50.713	51.676	0	-0.046045	-0.00025386	NaN	30.225	29	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5175800	+		63159	24379	46101	46459							0.01998399868773504
YIFPAILKI	9	Unmodified	_YIFPAILKI_					0	0	0		ENSG00000181371|ENST00000327216|OR5M8	ENSG00000181371|ENST00000327216|OR5M8	ENSG00000181371|ENST00000327216|OR5M8	MULTI-MSMS	A375_MHC_IP_R1	1	539.1329345703125	2	539.338978	1076.6634	-0.72383	-0.00039039	0.68751	0.0003708	-0.036318	-1.9588E-05	539.339014868515	129.07	0.20378	129.07	128.94	129.14	0					5	3	2	0	0	0	0.67372	1	49550	49550		9.3474	2.0582	1	3162900			63160	8344	46102	46460	61514	61514					0.12813855418903586
YIFQKISQGK	10	Unmodified	_YIFQKISQGK_					0	0	0		nc|ENSG00000162641|Q5T1N1-2|AKNAD1;nc|ENSG00000162641|Q5T1N1-3|AKNAD1;nc|ENSG00000162641|Q5T1N1-4|AKNAD1;ENSG00000162641|ENST00000370001|AKNAD1	nc|ENSG00000162641|Q5T1N1-2|AKNAD1	nc|ENSG00000162641|Q5T1N1-2|AKNAD1	MULTI-SECPEP	A375_MHC_IP_R2	2	404.9642028808594	3	404.564279	1210.67101	-0.19491	-7.8855E-05	0.16182	6.5468E-05	-0.033088	-1.3386E-05	404.5642270593738	34.907	0.40312	35.67	35.475	35.878	0.76338					16	7	3	0	0	0	0.87043	1	12651	12651		17.863	0.75027	1	3018800			63161	6571	46103	46461	61515	61515					0.07409962948509019
YIFQLFSVC	9	Unmodified	_YIFQLFSVC_					0	0	0		ENSG00000127249|ENST00000342695|ATP13A4;ATP13A4|p.R460Gfs*2|1|0.19|ENSG00000127249|chr3:193465023-193465023|T/-|frameshift_variant;nc|ENSG00000127249|Q4VNC1-3|ATP13A4;nc|ENSG00000127249|Q4VNC1-2|ATP13A4	ENSG00000127249|ENST00000342695|ATP13A4	ENSG00000127249|ENST00000342695|ATP13A4	MULTI-MSMS	A375_MHC_IP_R1	1	560.6805419921875	2	560.280803	1118.54705	-0.62006	-0.00034741	0.032162	1.802E-05	-0.5879	-0.00032939	560.2808469606332	27.245	1.1587	27.245	26.728	27.887	0					39	22	2	0	0	0	0.46038	1	8221	8221		21.747	0.20967	1	3571700			63162	4081	46104	46462	61516	61516					-0.007478311433033014
YIFSDWCH	8	Unmodified	_YIFSDWCH_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-MSMS	A375_MHC_IP_R1	1	1070.4237060546875	1	1070.44003	1069.43275	0.072774	7.79E-05	0.2016	0.0002158	0.27437	0.0002937	1071.4418571480035	119.4	2.4845	119.4	117.87	120.35	0					92	48	3	0	0	0	0.77686	1	43961	43961		6.3541	1.1234	1	220660000	+		63163	20554	46105	46463	61517	61517					-0.09918720905420741
YIFSDWCH	8	Unmodified	_YIFSDWCH_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		1	1070.44003	1069.43275	0.072774	7.79E-05	0.2016	0.0002158	0.27437	0.0002937	1071.4418571480035	119.4	2.4845	119.4	117.87	120.35	0	-0.064423	0.00016916	NaN	6.3541	92	48	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220660000	+		63164	20554	46105	46463							-0.09918720905420741
YIFSDWCH	8	Unmodified	_YIFSDWCH_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-MATCH	A375_MHC_IP_R2	2		1	1070.44003	1069.43275	0.15729	0.00016837	-0.14572	-0.00015598	0.011568	1.2383E-05	1071.4412246732911	118.92	2.6866	119.53	117.58	120.27	0.60909	0.064423	-0.00020262	NaN	6.3541	93	52	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257860000	+		63165	20554	46105	46463							-0.09918720905420741
YIFSVELIK	9	Unmodified	_YIFSVELIK_					0	0	0			REV__ENST00000483493.6_1_9:26884817-26892259:-|nuORF	REV__ENST00000483493.6_1_9:26884817-26892259:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1110.9166259765625	1	1111.63977	1110.6325	0.25967	0.00028866	-3.8525	-0.0042826	-3.5928	-0.003994	1112.636716812442	116.84	0.30311	117.5	117.33	117.63	0.65962					7	5	2	0	0	0	0.75466	1	44159	44159		7.9102	0	1	4343700	+		63166	25291	46106	46464	61518	61518					0.0816065731398794
YIGEDLLSV	9	Unmodified	_YIGEDLLSV_					0	0	0			REV__ENSG00000114455|ENST00000467761|HHLA2	REV__ENSG00000114455|ENST00000467761|HHLA2	MULTI-SECPEP	A375_MHC_IP_R2	2	1007.9730224609375	1	1008.5248	1007.51753	0.040484	4.0829E-05	-0.15457	-0.00015589	-0.11409	-0.00011506	1008.5243890948914	108.39	0.40749	109.15	108.97	109.37	0.75436					12	7	2	0	0	0	0.3607	1	40910	40910		42.095	13.608	1	2021800	+		63167	17825	46107	46465	61519	61519					0.014069281122147004
YIGEETEAVY	10	Unmodified	_YIGEETEAVY_					0	0	0			REV__nc|ENSG00000131650|Q8NCW0-6|KREMEN2	REV__nc|ENSG00000131650|Q8NCW0-6|KREMEN2	MULTI-MSMS	A375_MHC_IP_R2	2	587.66796875	2	587.269144	1172.52373	-0.87516	-0.00051396	-0.34975	-0.0002054	-1.2249	-0.00071935	587.2687703003049	61.1	0.75543	61.845	61.566	62.322	0.74504					27	14	3	0	0	0	0.66712	1	23173	23173		15.847	1.9411	1	3369700	+		63168	18615	46108	46466	61520	61520					-0.055625984469543255
YIGNNRTAI	9	Unmodified	_YIGNNRTAI_					0	0	0		ENST00000260952.8_2_2:190528651-190530784:+|nuORF	ENST00000260952.8_2_2:190528651-190530784:+|nuORF	ENST00000260952.8_2_2:190528651-190530784:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	511.17193603515625	2	511.274898	1020.53524	-0.34033	-0.000174	-2.6545	-0.0013572	-2.9949	-0.0015312	511.2736234389922	62.496	0.41074	62.496	62.3	62.711	0					11	7	2	0	0	0	0.38603	1	22573	22573		25.399	1.6095	1	1106300			63169	10271	46109	46467	61521	61521					0.025796881576980013
YIGTPGHAP	9	Unmodified	_YIGTPGHAP_					0	0	0			REV__LTR2752_dup21|chr2:81481148-81482372:-|1.6527395747859144|0.0780133736102343|4.4|397.0|23|3|sense	REV__LTR2752_dup21|chr2:81481148-81482372:-|1.6527395747859144|0.0780133736102343|4.4|397.0|23|3|sense	MULTI-SECPEP	A375_MHC_IP_R1	1	912.8563232421875	1	912.457393	911.450116	0.37411	0.00034136	-3.1977	-0.0029177	-2.8236	-0.0025764	912.4570136203502	114.34	0.30341	114.34	114.21	114.52	0					6	5	2	0	0	0	0.74651	1	41995	41995		8.5933	3.8373	1	9042900	+		63170	26965	46110	46468	61522	61522					-0.009150573081001312
YIGWRAWD	8	Unmodified	_YIGWRAWD_					0	0	0			REV__ENST00000299980.8_2_16:71766447-71766639:-|nuORF	REV__ENST00000299980.8_2_16:71766447-71766639:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	533.172119140625	2	533.758884	1065.50321	-0.72744	-0.00038827	0.94007	0.00050177	0.21263	0.00011349	534.2598707006237	58.46	0.30539	58.46	58.328	58.633	0					8	5	2	0	0	0	0.94479	1	20963	20963		13.508	0	1	505540	+		63171	23411	46111	46469	61523	61523					-0.026916795254464887
YIGYCCTQWT	10	Unmodified	_YIGYCCTQWT_					0	0	0			REV__ENST00000518918.1_3_8:121455444-121455525:-|nuORF	REV__ENST00000518918.1_3_8:121455444-121455525:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	619.6536254882812	2	619.254459	1236.49437	-0.81987	-0.00050771	-0.25177	-0.00015591	-1.0716	-0.00066362	619.2542356159558	50.62	0.40538	51.374	51.159	51.564	0.75406					13	7	2	0	0	0	0.70651	1	19050	19050		9.3831	1.473	1	2239400	+		63172	25679	46112	46470	61524	61524					-0.11442157268447772
YIHALVHFLH	10	Unmodified	_YIHALVHFLH_					0	0	0			REV__nc|ENSG00000182208|Q70IA6|MOB2	REV__nc|ENSG00000182208|Q70IA6|MOB2	MULTI-SECPEP	A375_MHC_IP_R2	2	416.6318054199219	3	417.232864	1248.67676	-0.30659	-0.00012792	-3.7346	-0.0015582	-4.0412	-0.0016861	417.2313673867074	18.855	0.20984	19.458	19.423	19.633	0.60308					11	5	3	0	0	0	0.93005	1	5632	5632		7.1017	1.2336	1	83604000	+		63173	21677	46113	46471	61525	61525					0.06237106250841862
YIHFICIY	8	Unmodified	_YIHFICIY_					0	0	0		nc|ENSG00000145743|Q9UF56-2|FBXL17	nc|ENSG00000145743|Q9UF56-2|FBXL17	nc|ENSG00000145743|Q9UF56-2|FBXL17	MULTI-SECPEP	A375_MHC_IP_R1	1	1071.6123046875	1	1071.5332	1070.52592	0.23464	0.00025142	-0.75547	-0.00080952	-0.52084	-0.00055809	1071.5324289438145	118.39	1.6204	118.39	117.06	118.68	0					47	31	2	0	0	0	0.972	1	43554	43554		11.114	7.1701	1	283390000			63174	14663	46114	46472	61526	61526					-0.0065179645218904625
YIHFICIY	8	Unmodified	_YIHFICIY_					0	0	0		nc|ENSG00000145743|Q9UF56-2|FBXL17	nc|ENSG00000145743|Q9UF56-2|FBXL17	nc|ENSG00000145743|Q9UF56-2|FBXL17	MULTI-MATCH	A375_MHC_IP_R2	2		1	1071.5332	1070.52592	0.19987	0.00021417	-0.39772	-0.00042617	-0.19785	-0.00021201	1071.5329721162234	117.66	1.672	118.27	117.17	118.85	0.60909	-0.063279	0.00020994	NaN	11.114	49	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105450000			63175	14663	46114	46472							-0.0065179645218904625
YIHKRVIE	8	Unmodified	_YIHKRVIE_					0	0	0			REV__ADNP|p.F465Lfs*13|1|0.44|ENSG00000101126|chr20:50893319-50893319|G/-|frameshift_variant	REV__ADNP|p.F465Lfs*13|1|0.44|ENSG00000101126|chr20:50893319-50893319|G/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	353.610107421875	3	353.209948	1056.60801	-0.033099	-1.1691E-05	0.66279	0.0002341	0.62969	0.00022241	353.5444888332442	31.563	0.7605	31.563	31.109	31.87	0					28	14	3	0	0	0	0.77523	1	10138	10138		12.241	1.4411	1	3889700	+		63176	15337	46115	46473	61527	61527					0.08197441951142537
YIHQNGIPG	9	Unmodified	_YIHQNGIPG_					0	0	0			REV__nc|ENSG00000169398|Q05397-7|PTK2	REV__nc|ENSG00000169398|Q05397-7|PTK2	MULTI-SECPEP	A375_MHC_IP_R1	1	500.0880126953125	2	499.756341	997.498129	-0.63606	-0.00031788	0.46897	0.00023437	-0.1671	-8.3507E-05	499.7563326043503	39.769	0.50837	39.769	39.541	40.05	0					14	9	2	0	0	0	0.62767	1	13543	13543		23.148	10.106	1	2187600	+		63177	20929	46116	46474	61528	61528					-0.000719833880339138
YIHYLNSGEDP	11	Unmodified	_YIHYLNSGEDP_					0	0	0			REV__nc|ENSG00000155093|Q92932-3|PTPRN2	REV__nc|ENSG00000155093|Q92932-3|PTPRN2	MULTI-SECPEP	A375_MHC_IP_R1	1	654.6986694335938	2	654.298767	1306.58298	-0.47522	-0.00031093	0.36356	0.00023787	-0.11166	-7.3059E-05	654.2990464678402	58.347	0.71093	58.347	57.974	58.685	0					35	13	4	0	0	0	0.98748	1	20923	20923		8.7454	0	1	10442000	+		63178	27302	46117	46475	61529	61529					-0.05804702432760678
YIIAALEKKE	10	Unmodified	_YIIAALEKKE_					0	0	0			REV__tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1	REV__tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	589.7423095703125	2	589.344989	1176.67542	-0.073531	-4.3335E-05	-2.5145	-0.0014819	-2.588	-0.0015252	589.3434483193819	126.08	0.40403	126.08	126	126.41	0					14	7	2	0	0	0	0.70329	1	48155	48155		10.824	1.4408	1	8979100	+		63179	28495	46118	46476	61530	61530					0.09415427371413898
YIIAALEKKE	10	Unmodified	_YIIAALEKKE_					0	0	0			REV__tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1	REV__tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	589.344989	1176.67542	-0.073531	-4.3335E-05	-2.5145	-0.0014819	-2.588	-0.0015252	589.3434483193819	126.08	0.40403	126.08	126	126.41	0	-0.061338	0.00084031	NaN	10.824	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8979100	+		63180	28495	46118	46476							0.09415427371413898
YIIEKQELK	9	Unmodified	_YIIEKQELK_					0	0	0		ENST00000369651.7_1_6:86204486-86204609:+|nuORF	ENST00000369651.7_1_6:86204486-86204609:+|nuORF	ENST00000369651.7_1_6:86204486-86204609:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	582.7372436523438	2	582.337164	1162.65977	-0.4319	-0.00025151	0.11459	6.6731E-05	-0.3173	-0.00018478	582.3366374258092	85.487	0.4056	85.487	85.311	85.717	0					16	7	3	0	0	0	0.41434	1	31354	31354		32.786	0	1	2757100			63181	11137	46119	46477	61531	61531					0.0849514085437022
YIIGVFRKF	9	Unmodified	_YIIGVFRKF_					0	0	0		ENST00000476766.5_1_10:102747125-102750779:+|nuORF;nc|ENSG00000107815|Q96RR1-2|TWNK;ENSG00000107815|ENST00000311916|TWNK	ENST00000476766.5_1_10:102747125-102750779:+|nuORF	ENST00000476766.5_1_10:102747125-102750779:+|nuORF	MSMS	A375_MHC_IP_R1	1	381.6221923828125	3	381.56221	1141.6648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.826	1	80.826	80.326	81.326	0								0	0	0	0.15486	1	29531	29531		7.1017	1.3183	1				63182	2760	46120	46478	61532	61532					0.09963489507640588
YIKDDVILNE	10	Unmodified	_YIKDDVILNE_					0	0	0		ENSG00000136156|ENST00000647800|ITM2B	ENSG00000136156|ENST00000647800|ITM2B	ENSG00000136156|ENST00000647800|ITM2B	MULTI-SECPEP	A375_MHC_IP_R1	1	408.2840270996094	3	407.883566	1220.62887	-0.36374	-0.00014837	2.6964	0.0010998	2.3327	0.00095145	407.88488703338993	19.338	0.19003	19.338	19.23	19.42	0					10	4	3	0	0	0	0.92199	1	4783	4783		14.957	2.7824	1	11723000			63183	4760	46121	46479	61533	61533					0.02737942749490685
YIKDGITRV	9	Unmodified	_YIKDGITRV_					0	0	0		nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B;nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A;KIF1A|p.E770Rfs*62|1|0.42|ENSG00000130294|chr2:240760775-240760776|-/G|frameshift_variant	nc|ENSG00000054523|O60333-2|KIF1B;KIF1A|p.E770Rfs*62|1|0.42|ENSG00000130294|chr2:240760775-240760776|-/G|frameshift_variant	nc|ENSG00000054523|O60333-2|KIF1B	MULTI-MSMS	A375_MHC_IP_R1	1	355.46978759765625	3	355.541475	1063.60259	-0.39219	-0.00013944	0.22833	8.1179E-05	-0.16386	-5.8259E-05	355.5414760235487	29.773	0.34194	29.773	29.607	29.949	0					11	6	2	0	0	0	0.64945	1	9336	9336		11.518	3.3624	1	22637000			63184	1260;14215	46122	46480	61534	61534					0.07333718368658992
YIKDGITRV	9	Unmodified	_YIKDGITRV_					0	0	0		nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B;nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A;KIF1A|p.E770Rfs*62|1|0.42|ENSG00000130294|chr2:240760775-240760776|-/G|frameshift_variant	nc|ENSG00000054523|O60333-2|KIF1B;KIF1A|p.E770Rfs*62|1|0.42|ENSG00000130294|chr2:240760775-240760776|-/G|frameshift_variant	nc|ENSG00000054523|O60333-2|KIF1B	MULTI-MSMS	A375_MHC_IP_R2	2	355.46966552734375	3	355.541475	1063.60259	-1.0278	-0.00036543	0.048589	1.7275E-05	-0.97923	-0.00034816	355.541533290727	29.021	0.49799	29.719	29.534	30.032	0.69872					19	9	3	0	0	0	0.6894	1	10046	10046		7.9454	2.2135	1	21973000			63185	1260;14215	46122	46480	61535	61535					0.07333718368658992
YIKEQLKQVKR	11	Unmodified	_YIKEQLKQVKR_					0	0	0			REV__ENSG00000198963|ENST00000376896|RORB	REV__ENSG00000198963|ENST00000376896|RORB	MULTI-MSMS	A375_MHC_IP_R1	1	717.3352661132812	2	716.935368	1431.85618	-0.93387	-0.00066952	-0.10818	-7.7557E-05	-1.042	-0.00074708	716.9352407548556	143.59	0.39049	143.59	143.45	143.84	0					11	7	2	0	0	0	0.73934	1	55102	55102		0	0	1	495700	+		63186	22459	46123	46481	61536	61536					0.15752945748090497
YIKIKETTY	9	Unmodified	_YIKIKETTY_					0	0	0			REV__tr|U7SGF5|U7SGF5_FUSNUDUF4015domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02285PE=4SV=1	REV__tr|U7SGF5|U7SGF5_FUSNUDUF4015domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02285PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	387.2839050292969	3	386.885018	1157.63323	-0.40126	-0.00015524	-2.6097	-0.0010096	-3.0109	-0.0011649	386.88411849500636	18.905	0.25997	19.508	19.423	19.683	0.60308					10	6	2	0	0	0	0.69674	1	5728	5728		4.5289	0.33936	1	16687000	+		63187	28183	46124	46482	61537	61537					0.06071451963043728
YIKILRKML	9	Unmodified	_YIKILRKML_					0	0	0		nc|ENSG00000054983|P54803-5|GALC;nc|ENSG00000054983|P54803-4|GALC;nc|ENSG00000054983|P54803-3|GALC;ENSG00000054983|ENST00000261304|GALC	nc|ENSG00000054983|P54803-5|GALC	nc|ENSG00000054983|P54803-5|GALC	MSMS	A375_MHC_IP_R2	2	589.3621826171875	2	589.378112	1176.74167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.558	1	70.292	69.792	70.792	0.73421								0	0	0	0.15486	1	26359	26359		2.3027	0	1				63188	1265	46125	46483	61538	61538					0.16036964732484194
YIKKEWPVV	9	Unmodified	_YIKKEWPVV_					0	0	0			REV__ENSG00000113889|ENST00000644859|KNG1	REV__ENSG00000113889|ENST00000644859|KNG1	MULTI-MSMS	A375_MHC_IP_R1	1	388.2769470214844	3	387.893737	1160.65938	0.41818	0.00016221	-0.46288	-0.00017955	-0.044709	-1.7342E-05	387.8935768538394	21.396	1.0701	21.396	20.435	21.505	0					38	20	2	0	0	0	0.7235	1	5267	5267		4.897	4.897	1	2339000	+		63189	17807	46126	46484	61539	61539					0.0854776592516373
YIKKEWPVV	9	Unmodified	_YIKKEWPVV_					0	0	0			REV__ENSG00000113889|ENST00000644859|KNG1	REV__ENSG00000113889|ENST00000644859|KNG1	MULTI-MSMS	A375_MHC_IP_R2	2	387.9401550292969	3	387.893737	1160.65938	-0.4946	-0.00019185	-0.12767	-4.9522E-05	-0.62227	-0.00024137	387.89368791726446	22.521	0.71538	23.151	22.959	23.675	0.63014					23	13	3	0	0	0	0.70411	1	7262	7262		6.6304	0.76223	1	3288300	+		63190	17807	46126	46484	61540	61540					0.0854776592516373
YIKKWVFK	8	Unmodified	_YIKKWVFK_					0	0	0			REV__ENST00000510590.1_1_4:169299529-169300521:-|nuORF	REV__ENST00000510590.1_1_4:169299529-169300521:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	371.6272888183594	3	371.226939	1110.65899	0.29788	0.00011058	0.38155	0.00014164	0.67943	0.00025222	371.22719243584845	59.083	1.1689	59.083	58.736	59.905	0					33	22	3	0	0	0	0.77815	1	21248	21248		1.6526	1.6526	1	2661900	+		63191	25604	46127	46485	61541	61541					0.1080839099597597
YIKRHRIF	8	Unmodified	_YIKRHRIF_					0	0	0			REV__ZNF404|p.H181Y|1|0.4|ENSG00000176222|chr19:43873673-43873673|G/A|missense_variant	REV__ZNF404|p.H181Y|1|0.4|ENSG00000176222|chr19:43873673-43873673|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	566.354248046875	2	566.840542	1131.66653	-0.42897	-0.00024316	-0.97743	-0.00055405	-1.4064	-0.0007972	566.8392874816082	76.319	0.20142	76.319	76.168	76.37	0					5	3	2	0	0	0	0.972	1	27768	27768		2.8892	2.5386	1	262680	+		63192	29038	46128	46486	61542	61542					0.10596543316250973
YIKTISIL	8	Unmodified	_YIKTISIL_					0	0	0		tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1	tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1	tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	949.9904174804688	1	950.592096	949.584819	-0.31851	-0.00030278	0.98331	0.00093473	0.6648	0.00063195	950.5934301673013	145.6	0.11304	145.6	145.52	145.63	0					24	15	2	0	0	0	0.972	1	55785	55785		0	0	1	137090			63193	30025	46129	46487	61543	61543					0.1080100311382921
YIKVLVRL	8	Unmodified	_YIKVLVRL_					0	0	0			REV__nc|ENSG00000173692|Q99460-2|PSMD1	REV__nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-SECPEP	A375_MHC_IP_R1	1	1002.9014282226562	1	1003.66626	1002.65899	-0.26861	-0.0002696	0.88431	0.00088755	0.6157	0.00061795	1004.6705120472632	122.17	0.45762	122.17	121.97	122.43	0					10	8	2	0	0	0	0.972	1	45549	45549		2.8892	0	1	18709000	+		63194	21239	46130	46488	61544	61544					0.1577639099600674
YILAEVSFHFK	11	Unmodified	_YILAEVSFHFK_					0	0	0		ENST00000393405.6_2_17:46185143-46189419:+|nuORF	ENST00000393405.6_2_17:46185143-46189419:+|nuORF	ENST00000393405.6_2_17:46185143-46189419:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	677.7952270507812	2	677.363713	1352.71287	-0.68785	-0.00046593	0.57984	0.00039276	-0.10801	-7.3161E-05	677.3641766901834	130.21	0.60782	130.42	130.1	130.7	0.2142					21	11	2	0	0	0	0.66366	1	51299	51299		18.373	0	1	4512700			63195	11439	46131	46489	61545	61545					0.05062518637032554
YILEDSVVDP	10	Unmodified	_YILEDSVVDP_					0	0	0		ENST00000567272.1_1_6:126964989-126965184:+|nuORF	ENST00000567272.1_1_6:126964989-126965184:+|nuORF	ENST00000567272.1_1_6:126964989-126965184:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	575.2180786132812	2	575.287337	1148.56012	-0.44287	-0.00025478	-4.2044	-0.0024187	-4.6472	-0.0026735	575.7873686936765	90.717	0.5598	90.717	90.488	91.048	0					15	10	2	0	0	0	0.92389	1	33417	33417		7.2892	2.0586	1	1397800			63196	13568	46132	46490	61546	61546					-0.008217215502327235
YILEGEPGKV	10	Unmodified	_YILEGEPGKV_					0	0	0		nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-3|SRP68;ENST00000588736.1_1_17:74041371-74044231:-|nuORF	nc|ENSG00000167881|Q9UHB9-2|SRP68;ENST00000588736.1_1_17:74041371-74044231:-|nuORF	nc|ENSG00000167881|Q9UHB9-2|SRP68	MULTI-SECPEP	A375_MHC_IP_R1	1	553.2002563476562	2	552.800414	1103.58628	-0.34465	-0.00019053	-0.1446	-7.9934E-05	-0.48925	-0.00027046	552.8002536414164	53.964	0.7082	53.964	53.605	54.314	0					25	13	3	0	0	0	0.76455	1	19253	19253		43.982	43.982	1	2887400			63197	7233;13768	46133	46491	61547	61547					0.03862592411906007
YILGLVEDPV	10	Unmodified	_YILGLVEDPV_					0	0	0			REV__nc|ENSG00000167608|Q7Z404-1|TMC4	REV__nc|ENSG00000167608|Q7Z404-1|TMC4	MULTI-SECPEP	A375_MHC_IP_R1	1	558.6793212890625	2	559.310615	1116.60668	-0.40995	-0.00022929	1.7117	0.00095737	1.3017	0.00072808	559.3127707548823	82.814	0.20152	82.814	82.722	82.924	0					5	3	2	0	0	0	0.92389	1	30312	30312		11.64	5.4345	1	1213500	+		63198	20776	46134	46492	61548	61548					0.05303763071697176
YILILRPYH	9	Unmodified	_YILILRPYH_					0	0	0			REV__ENST00000484789.5_1_7:154659706-154672733:+|nuORF	REV__ENST00000484789.5_1_7:154659706-154672733:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	1187.6927490234375	1	1187.69354	1186.68626	0.1716	0.0002038	-1.4698	-0.0017457	-1.2983	-0.0015419	1187.6930687814472	117.56	0.30551	117.56	117.36	117.66	0					7	5	2	0	0	0	0.77244	1	43118	43118		5.2307	0	1	9329700	+		63199	25304	46135	46493	61549	61549					0.10038874536348885
YILKCVRLL	9	Unmodified	_YILKCVRLL_					0	0	0			REV__nc|ENSG00000132669|Q8WYP3-2|RIN2	REV__nc|ENSG00000132669|Q8WYP3-2|RIN2	MULTI-SECPEP	A375_MHC_IP_R2	2	373.4804382324219	3	374.235217	1119.68382	0.35114	0.00013141	-1.4997	-0.00056126	-1.1486	-0.00042985	374.23478257015745	77.374	0.25549	78.117	78.01	78.265	0.74294					6	4	2	0	0	0	0.81645	1	29423	29423		0.26902	0	1	650250	+		63200	18669	46136	46494	61550	61550					0.12876702807056972
YILLARLND	9	Unmodified	_YILLARLND_					0	0	0			REV__nc|ENSG00000070214|Q8WWI5-3|SLC44A1	REV__nc|ENSG00000070214|Q8WWI5-3|SLC44A1	MSMS	A375_MHC_IP_R2	2	545.716552734375	2	545.816399	1089.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.55	1	121.07	120.57	121.57	0.51711								0	0	0	0.15142	1	46018	46018		19.257	2.3147	1		+		63201	16570	46137	46495	61551	61551					0.07702004885709357
YILNNKEND	9	Unmodified	_YILNNKEND_					0	0	0			REV__nc|ENSG00000093167|Q9Y608-2|LRRFIP2	REV__nc|ENSG00000093167|Q9Y608-2|LRRFIP2	MULTI-SECPEP	A375_MHC_IP_R2	2	375.2526550292969	3	374.852377	1121.5353	0.43661	0.00016366	0.15059	5.645E-05	0.5872	0.00022011	374.8524322903912	43.186	0.70903	43.959	43.674	44.383	0.7724					27	13	3	0	0	0	0.71071	1	16066	16066		19.362	5.7471	1	7771400	+		63202	16982	46138	46496	61552	61552					-0.020603566329327805
YILPFSEVL	9	Unmodified	_YILPFSEVL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;EXT2|p.D431Afs*5|1|0.05|ENSG00000151348|chr11:44171729-44171729|A/-|frameshift_variant;ENST00000531161.5_1_11:44146432-44228372:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MSMS	A375_MHC_IP_R1	1	541.2022705078125	2	540.802426	1079.5903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.14	1	133.14	132.64	133.64	0								0	0	0	0.0078616	1	51342	51342		93.883	19.487	1				63203	5898	46139	46497	61553	61553					0.053686819056110835
YILPFSEVL	9	Unmodified	_YILPFSEVL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;EXT2|p.D431Afs*5|1|0.05|ENSG00000151348|chr11:44171729-44171729|A/-|frameshift_variant;ENST00000531161.5_1_11:44146432-44228372:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-SECPEP	A375_MHC_IP_R2	2	541.2019653320312	2	540.802426	1079.5903	-0.78059	-0.00042215	0.011556	6.2496E-06	-0.76904	-0.0004159	540.8023638691891	132.9	0.25406	133.07	132.94	133.2	0.16487					8	4	3	0	0	0	0.017833	1	52312	52312		106.85	59.925	1	5515500			63204	5898	46139	46497	61554	61554					0.053686819056110835
YILSTGDSFY	10	Unmodified	_YILSTGDSFY_					0	0	0		ENSG00000145241|ENST00000273853|CENPC;ENST00000515140.1_3_4:68340585-68358532:-|nuORF;ENST00000513216.5_3_4:68338325-68358532:-|nuORF	ENSG00000145241|ENST00000273853|CENPC	ENSG00000145241|ENST00000273853|CENPC	MULTI-MSMS	A375_MHC_IP_R2	2	583.6734619140625	2	583.274229	1164.53391	-0.31721	-0.00018502	-0.70804	-0.00041298	-1.0252	-0.000598	583.2736360571485	68.071	0.60979	68.806	68.409	69.018	0.73511					18	11	2	0	0	0	0.30274	1	25799	25799		39.957	0.0076237	1	1212800			63205	5544	46140	46498	61555	61555					-0.04177990721700553
YILVFNNK	8	Unmodified	_YILVFNNK_					0	0	0			REV__ENST00000466598.5_1_3:183894781-183896942:+|nuORF	REV__ENST00000466598.5_1_3:183894781-183896942:+|nuORF	MSMS	A375_MHC_IP_R2	2	505.6697998046875	2	505.78711	1009.55967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.952	1	75.69	75.19	76.19	0.73752								0	0	0	0.16876	1	28450	28450		10.183	0	1		+		63206	20202	46141	46499	61556	61556					0.055269483112283524
YILVLLLARFV	11	Unmodified	_YILVLLLARFV_					0	0	0			REV__VANGL1|p.F194Y|1|0.59|ENSG00000173218|chr1:115664037-115664037|T/A|missense_variant	REV__VANGL1|p.F194Y|1|0.59|ENSG00000173218|chr1:115664037-115664037|T/A|missense_variant	MSMS	A375_MHC_IP_R1	1	660.5006713867188	2	660.426116	1318.83768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.898	1	87.898	87.398	88.398	0								0	0	0	0.16331	1	32261	32261		1.4819	0	1		+		63207	28976	46142	46500	61557	61557					0.19101435844208936
YILWLPYII	9	Unmodified	_YILWLPYII_					0	0	0		ENSG00000188394|ENST00000616002|GPR21	ENSG00000188394|ENST00000616002|GPR21	ENSG00000188394|ENST00000616002|GPR21	MULTI-MSMS	A375_MHC_IP_R1	1	1194.6961669921875	1	1193.69689	1192.68962	-0.63787	-0.00076142	-0.48276	-0.00057627	-1.1206	-0.0013377	1194.6961332769586	123.67	0.30312	123.67	123.49	123.79	0					9	5	3	0	0	0	0.67372	1	46212	46212		9.3474	0	1	21513000			63208	8907	46143	46501	61558	61558					0.10098124590376756
YIMEKIVQA	9	Unmodified	_YIMEKIVQA_					0	0	0		nc|ENSG00000117477|Q5TID7-2|CCDC181;nc|ENSG00000117477|Q5TID7-3|CCDC181;ENSG00000117477|ENST00000367806|CCDC181	nc|ENSG00000117477|Q5TID7-2|CCDC181	nc|ENSG00000117477|Q5TID7-2|CCDC181	MULTI-SECPEP	A375_MHC_IP_R2	2	548.1422119140625	2	547.79936	1093.58417	-0.71039	-0.00038915	1.0952	0.00059995	0.38482	0.0002108	548.3012875050408	64.101	0.45738	64.841	64.648	65.106	0.74023					11	8	2	0	0	0	0.37663	1	24272	24272		29.841	12.898	1	1022500			63209	14560	46144	46502	61559	61559					0.04111840402447342
YIMKRAKP	8	Unmodified	_YIMKRAKP_					0	0	0			REV__ENSG00000137501|ENST00000359152|SYTL2	REV__ENSG00000137501|ENST00000359152|SYTL2	MULTI-MSMS	A375_MHC_IP_R2	2	1008.5678100585938	1	1006.58663	1005.57936	0.10319	0.00010387	0.36215	0.00036454	0.46534	0.00046841	1006.5889854317869	118.67	0.76054	119.28	118.74	119.5	0.60909					25	14	3	0	0	0	0.77781	1	45036	45036		2.8892	0	1	49299000	+		63210	19015	46145	46503	61560	61560					0.07679001050348688
YIMSYISRV	9	Unmodified	_YIMSYISRV_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-SECPEP	A375_MHC_IP_R1	1	566.6963500976562	2	566.296985	1130.57942	-0.47734	-0.00027032	-0.35519	-0.00020115	-0.83253	-0.00047146	566.2965884320004	81.054	0.61038	81.054	80.592	81.202	0					21	11	3	0	0	0	0.49701	1	29617	29617		40.239	18.493	1	2278800			63211	6247	46146	46504	61561	61561					0.019349562596744363
YIMSYISRV	9	Unmodified	_YIMSYISRV_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-SECPEP	A375_MHC_IP_R2	2	566.6973266601562	2	566.296985	1130.57942	-0.39915	-0.00022604	-1.2222	-0.00069215	-1.6214	-0.00091818	566.2962407205608	80.117	0.81213	80.862	80.453	81.265	0.74474					22	15	2	0	0	0	0.53783	1	30455	30455		36.506	14.76	1	2417400			63212	6247	46146	46504	61562	61562					0.019349562596744363
YIMSYISRV	9	Oxidation (M)	_YIM(Oxidation (M))SYISRV_		YIM(1)SYISRV		YIM(44)SYISRV	0	0	1		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-SECPEP	A375_MHC_IP_R2	2	574.6939086914062	2	574.294442	1146.57433	-0.55123	-0.00031657	-0.40476	-0.00023245	-0.95599	-0.00054902	574.294181536068	56.376	0.35752	57.126	56.948	57.306	0.75015					10	6	2	0	0	0	0.37663	1	21339	21339		43.772	16.889	1	2326800			63213	6247	46146	46505	61563	61563		334			0.00690652397042868
YINENRKLL	9	Unmodified	_YINENRKLL_					0	0	0			REV__ENSG00000156162|ENST00000414645|DPY19L4	REV__ENSG00000156162|ENST00000414645|DPY19L4	MSMS	A375_MHC_IP_R1	1	581.7307739257812	2	581.83258	1161.65061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.4	1	136.4	135.9	136.9	0								0	0	0	0.15486	1	52541	52541		9.3474	0	1		+		63214	19965	46147	46506	61564	61564					0.0762479228869779
YINIDENY	8	Unmodified	_YINIDENY_					0	0	0			REV__tr|U7SWY0|U7SWY0_FUSNUAmidohydrolase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01211PE=4SV=1	REV__tr|U7SWY0|U7SWY0_FUSNUAmidohydrolase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01211PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	522.6527709960938	2	522.237647	1042.46074	-0.5257	-0.00027454	-3.0629	-0.0015996	-3.5886	-0.0018741	522.7373449231831	104.47	0.15376	105.23	105.16	105.31	0.76308					4	2	2	0	0	0	0.72008	1	39547	39547		28.487	0	1	473620	+		63215	28614	46148	46507	61565	61565					-0.05879119444330172
YINQRKKFRRR	11	Unmodified	_YINQRKKFRRR_					0	0	0		ENSG00000106484|ENST00000223215|MEST;nc|ENSG00000106484|Q5EB52-3|MEST;nc|ENSG00000106484|Q5EB52-2|MEST	ENSG00000106484|ENST00000223215|MEST	ENSG00000106484|ENST00000223215|MEST	MULTI-SECPEP	A375_MHC_IP_R2	2	783.4220581054688	2	782.9684	1563.92225	-1.0306	-0.00080696	0.74115	0.0005803	-0.2895	-0.00022667	782.9692526353953	129.22	0.30334	129.46	129.26	129.57	0.23946					6	5	2	0	0	0	1.0014	1	50809	50809		0	0	1	6125500			63216	2695	46149	46508	61566	61566					0.16284199433516733
YIPPCLDSEL	10	Unmodified	_YIPPCLDSEL_					0	0	0		ENSG00000113140|ENST00000231061|SPARC	ENSG00000113140|ENST00000231061|SPARC	ENSG00000113140|ENST00000231061|SPARC	MULTI-SECPEP	A375_MHC_IP_R1	1	575.72265625	2	575.278457	1148.54236	-0.068913	-3.9644E-05	2.9935	0.0017221	2.9246	0.0016825	575.2791805238497	105.74	0.30546	105.74	105.6	105.91	0					8	5	2	0	0	0	0.90853	1	38790	38790		10.824	0	1	1904100			63217	3126	46150	46509	61567	61567					-0.02596760076744431
YIPREIDL	8	Unmodified	_YIPREIDL_					0	0	0			REV__TUBA1B|p.T223I|1|0.45|ENSG00000123416|chr12:49128646-49128646|G/A|missense_variant	REV__TUBA1B|p.T223I|1|0.45|ENSG00000123416|chr12:49128646-49128646|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	509.7036437988281	2	509.782025	1017.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.161	1	76.161	75.661	76.661	0								0	0	0	0.16876	1	27758	27758		24.674	4.2203	1		+		63218	28933	46151	46510	61568	61568					0.04142340586008686
YIQETVHDVHY	11	Unmodified	_YIQETVHDVHY_					0	0	0			REV__ENSG00000117245|ENST00000400463|KIF17	REV__ENSG00000117245|ENST00000400463|KIF17	MULTI-MSMS	A375_MHC_IP_R2	2	468.9575500488281	3	468.557853	1402.65173	-0.71117	-0.00033323	0.064303	3.013E-05	-0.64687	-0.0003031	468.55795824265005	50.972	0.45416	51.726	51.462	51.917	0.75406					12	8	2	0	0	0	0.72515	1	19188	19188		13.519	3.7544	1	3019100	+		63219	17999	46152	46511	61569	61569					-0.03349038133023896
YIQKEFRRRIA	11	Unmodified	_YIQKEFRRRIA_					0	0	0			REV__VPS4B|p.R295Q|1|0.32|ENSG00000119541|chr18:63397242-63397242|C/T|missense_variant	REV__VPS4B|p.R295Q|1|0.32|ENSG00000119541|chr18:63397242-63397242|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	494.1686706542969	3	493.956282	1478.84702	-0.48533	-0.00023973	1.166	0.00057595	0.68067	0.00033622	493.95694328624484	73.082	0.51002	73.817	73.581	74.091	0.73541					17	9	3	0	0	0	0.99881	1	27773	27773		1.4551	0.34536	1	1072100	+		63220	28985	46153	46512	61570	61570					0.12674597182444813
YIQNRRRV	8	Unmodified	_YIQNRRRV_					0	0	0			REV__ENST00000452841.1_1_13:19467552-19468185:-|nuORF	REV__ENST00000452841.1_1_13:19467552-19468185:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	552.7064208984375	2	552.822881	1103.63121	-0.81985	-0.00045323	-0.75538	-0.00041759	-1.5752	-0.00087082	552.8223570209805	127.47	1.4724	127.74	127.51	128.98	0.26593					43	28	2	0	0	0	0.972	1	50389	50389		2.3027	2.3027	1	27755000	+		63221	24905	46154	46513	61571	61571					0.08353880788445167
YIQPPPMSI	9	Unmodified	_YIQPPPMSI_					0	0	0			REV__ENSG00000112981|ENST00000265191|NME5	REV__ENSG00000112981|ENST00000265191|NME5	MULTI-MSMS	A375_MHC_IP_R1	1	523.225830078125	2	523.272978	1044.5314	-0.40029	-0.00020946	-0.10888	-5.6974E-05	-0.50917	-0.00026643	523.2729974617118	93.459	1.8279	93.459	92.463	94.291	0					51	35	2	0	0	0	0.5339	1	34186	34186		18.135	4.6271	1	9390200	+		63222	17762	46155	46514	61572	61572					0.01091882339642325
YIQPPPMSI	9	Unmodified	_YIQPPPMSI_					0	0	0			REV__ENSG00000112981|ENST00000265191|NME5	REV__ENSG00000112981|ENST00000265191|NME5	MULTI-MSMS	A375_MHC_IP_R2	2	523.2265625	2	523.272978	1044.5314	-0.47126	-0.0002466	-0.88906	-0.00046522	-1.3603	-0.00071182	523.2727929808151	92.639	2.2298	93.378	92.432	94.661	0.73902					88	43	4	0	0	0	0.5339	1	35003	35003		18.135	4.6271	1	12318000	+		63223	17762	46155	46514	61573	61573					0.01091882339642325
YIQPQPLGV	9	Unmodified	_YIQPQPLGV_					0	0	0		ENST00000467473.5_1_17:19551570-19555957:+|nuORF;ENSG00000072210|ENST00000176643|ALDH3A2;nc|ENSG00000072210|P51648-2|ALDH3A2	ENST00000467473.5_1_17:19551570-19555957:+|nuORF	ENST00000467473.5_1_17:19551570-19555957:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	508.18414306640625	2	507.784567	1013.55458	-0.52852	-0.00026838	0.18529	9.4088E-05	-0.34323	-0.00017429	507.78458439041015	80.359	0.81383	80.359	79.879	80.693	0					20	15	3	0	0	0	0.043556	1	29329	29329		77.984	21.807	1	3053600			63224	1533	46156	46515	61574	61574					0.048346444486242035
YIQPQPLGV	9	Unmodified	_YIQPQPLGV_					0	0	0		ENST00000467473.5_1_17:19551570-19555957:+|nuORF;ENSG00000072210|ENST00000176643|ALDH3A2;nc|ENSG00000072210|P51648-2|ALDH3A2	ENST00000467473.5_1_17:19551570-19555957:+|nuORF	ENST00000467473.5_1_17:19551570-19555957:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	508.1839294433594	2	507.784567	1013.55458	-0.65243	-0.00033129	-0.26157	-0.00013282	-0.91399	-0.00046411	507.7842914844321	79.627	0.61057	80.371	79.946	80.556	0.74474					24	11	3	0	0	0	0.07754	1	30185	30185		64.236	28.192	1	4329300			63225	1533	46156	46515	61575	61575					0.048346444486242035
YIQTLEML	8	Unmodified	_YIQTLEML_					0	0	0			REV__nc|ENSG00000128284|O95236|APOL3	REV__nc|ENSG00000128284|O95236|APOL3	MSMS	A375_MHC_IP_R1	1	505.6639099121094	2	505.764986	1009.51542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.355	1	90.355	89.855	90.855	0								0	0	0	0.16876	1	33205	33205		15.768	0	1		+		63226	18447	46157	46516	61576	61576					0.011041761027399843
YIRCTSYNI	9	Unmodified	_YIRCTSYNI_					0	0	0		ENSG00000176986|ENST00000345254|SEC24C	ENSG00000176986|ENST00000345254|SEC24C	ENSG00000176986|ENST00000345254|SEC24C	MULTI-MSMS	A375_MHC_IP_R1	1	566.697021484375	2	566.776416	1131.53828	-0.38428	-0.0002178	2.9816	0.0016899	2.5973	0.0014721	566.7781124408059	77.431	0.50555	77.431	77.133	77.639	0					10	9	2	0	0	0	0.38603	1	28230	28230		25.399	7.253	1	1545100			63227	8050	46158	46517	61577	61577					-0.022228047797852923
YIRDLQLEL	9	Unmodified	_YIRDLQLEL_					0	0	0		nc|ENSG00000125968|P41134-2|ID1;ENSG00000125968|ENST00000376112|ID1	nc|ENSG00000125968|P41134-2|ID1	nc|ENSG00000125968|P41134-2|ID1	MULTI-SECPEP	A375_MHC_IP_R1	1	582.2266845703125	2	581.826963	1161.63937	-0.26369	-0.00015342	-0.38388	-0.00022335	-0.64757	-0.00037677	581.8267381614803	91.566	0.70705	91.566	91.249	91.956	0					32	13	3	0	0	0	0.048303	1	33610	33610		93.166	18.237	1	10996000			63228	4014	46159	46518	61578	61578					0.06501970194563
YIRDLQLEL	9	Unmodified	_YIRDLQLEL_					0	0	0		nc|ENSG00000125968|P41134-2|ID1;ENSG00000125968|ENST00000376112|ID1	nc|ENSG00000125968|P41134-2|ID1	nc|ENSG00000125968|P41134-2|ID1	MULTI-SECPEP	A375_MHC_IP_R2	2	582.226318359375	2	581.826963	1161.63937	-0.25662	-0.00014931	-0.45583	-0.00026521	-0.71244	-0.00041452	581.8266172731962	90.773	0.70815	91.507	91.211	91.919	0.7345					33	13	4	0	0	0	0.05217	1	34515	34515		89.401	7.5105	1	8065800			63229	4014	46159	46518	61579	61579					0.06501970194563
YIRHEFKKT	9	Unmodified	_YIRHEFKKT_					0	0	0			REV__ENSG00000172986|ENST00000389617|GXYLT2	REV__ENSG00000172986|ENST00000389617|GXYLT2	MULTI-SECPEP	A375_MHC_IP_R2	2	407.1496276855469	3	407.89614	1220.66659	-0.15215	-6.206E-05	-0.24629	-0.00010046	-0.39844	-0.00016252	407.89605178679943	66.221	0.40919	66.959	66.731	67.14	0.73811					10	7	2	0	0	0	0.67483	1	25045	25045		6.6304	1.1071	1	760860	+		63230	21187	46160	46519	61580	61580					0.06508498525590767
YIRIKFCINRF	11	Unmodified	_YIRIKFCINRF_					0	0	0		tr|U7SH92|U7SH92_FUSNUDUF2179domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02227PE=4SV=1	tr|U7SH92|U7SH92_FUSNUDUF2179domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02227PE=4SV=1	tr|U7SH92|U7SH92_FUSNUDUF2179domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02227PE=4SV=1	MSMS	A375_MHC_IP_R1	1	491.6659240722656	3	491.611346	1471.81221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.554	1	40.554	40.054	41.054	0								0	0	0	0.1624	1	13943	13943		2.8433	1.3882	1				63231	29419	46161	46520	61581	61581					0.09517638050124333
YIRIKFCINRF	11	Unmodified	_YIRIKFCINRF_					0	0	0		tr|U7SH92|U7SH92_FUSNUDUF2179domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02227PE=4SV=1	tr|U7SH92|U7SH92_FUSNUDUF2179domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02227PE=4SV=1	tr|U7SH92|U7SH92_FUSNUDUF2179domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02227PE=4SV=1	MSMS	A375_MHC_IP_R1	1	491.67498779296875	3	491.611346	1471.81221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.723	1	40.723	40.223	41.223	0								0	0	0	0.1624	1	14012	14012		2.8433	1.3882	1				63232	29419	46161	46520	61582	61582					0.09517638050124333
YIRLKCDKWKK	11	Unmodified	_YIRLKCDKWKK_					0	0	0			REV__nc|ENSG00000074803|Q13621-3|SLC12A1	REV__nc|ENSG00000074803|Q13621-3|SLC12A1	MULTI-MSMS	A375_MHC_IP_R1	1	494.7006530761719	3	494.286751	1479.83842	-0.60964	-0.00030133	-0.13176	-6.5126E-05	-0.74139	-0.00036646	494.28656758790095	132.74	1.0164	132.74	132.08	133.1	0					53	19	4	0	0	0	0.73809	1	51061	51061		0.40827	0.041592	1	9691900	+		63233	16642	46162	46521	61583	61583					0.11769907221582798
YIRLKCDKWKK	11	Unmodified	_YIRLKCDKWKK_					0	0	0			REV__nc|ENSG00000074803|Q13621-3|SLC12A1	REV__nc|ENSG00000074803|Q13621-3|SLC12A1	MULTI-MSMS	A375_MHC_IP_R1	1	494.6861572265625	3	494.286751	1479.83842	-0.62202	-0.00030745	-0.48282	-0.00023865	-1.1048	-0.0005461	494.2864399277314	133.5	1.9297	133.5	133.1	135.03	0					83	37	4	0	0	0	0.73672	1	51475	51475		1.0136	0.60531	1	24183000	+		63234	16642	46162	46521	61584	61584					0.11769907221582798
YIRLKCDKWKK	11	Unmodified	_YIRLKCDKWKK_					0	0	0			REV__nc|ENSG00000074803|Q13621-3|SLC12A1	REV__nc|ENSG00000074803|Q13621-3|SLC12A1	MULTI-SECPEP	A375_MHC_IP_R1	1	494.19915771484375	3	494.286751	1479.83842	-0.62202	-0.00030745	-0.48282	-0.00023865	-1.1048	-0.0005461	494.2864399277314	133.5	1.9297	133.5	133.1	135.03	0					83	37	4	0	0	0	1.0001	1	51400	51400		1.0136	0.60531	1	24183000	+		63235	16642	46162	46521	61585	61585					0.11769907221582798
YIRLKCDKWKK	11	Unmodified	_YIRLKCDKWKK_					0	0	0			REV__nc|ENSG00000074803|Q13621-3|SLC12A1	REV__nc|ENSG00000074803|Q13621-3|SLC12A1	MULTI-MSMS	A375_MHC_IP_R2	2	494.6861572265625	3	494.286751	1479.83842	-0.4362	-0.00021561	-0.28715	-0.00014194	-0.72336	-0.00035755	494.2862709223356	132.58	1.1691	132.77	132.05	133.22	0.18953					58	22	4	0	0	0	0.73809	1	52316	52316		0.40827	0	1	10260000	+		63236	16642	46162	46521	61586	61586					0.11769907221582798
YIRLKCDKWKK	11	Unmodified	_YIRLKCDKWKK_					0	0	0			REV__nc|ENSG00000074803|Q13621-3|SLC12A1	REV__nc|ENSG00000074803|Q13621-3|SLC12A1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	494.286751	1479.83842	-0.40978	-0.00020255	-0.63041	-0.0003116	-1.0402	-0.00051415	494.28635095749434	133.41	1.5768	133.58	133.15	134.72	0.16487	0.038877	-0.00012155	NaN	1.0136	80	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21543000	+		63237	16642	46162	46521							0.11769907221582798
YIRLSDPDL	9	Unmodified	_YIRLSDPDL_					0	0	0			REV__ENSG00000057468|ENST00000263187|MSH4	REV__ENSG00000057468|ENST00000263187|MSH4	MULTI-MSMS	A375_MHC_IP_R2	2	546.725830078125	2	546.290214	1090.56587	-0.82973	-0.00045328	-0.25642	-0.00014008	-1.0862	-0.00059335	546.2903826113775	106.35	0.55962	107.11	106.78	107.34	0.75977					20	10	3	0	0	0	0.62719	1	40157	40157		13.508	0.97634	1	2406400	+		63238	16426	46163	46522	61587	61587					0.02421421752092101
YIRQGKLSI	9	Unmodified	_YIRQGKLSI_					0	0	0		nc|ENSG00000090376|Q9Y616-2|IRAK3;ENSG00000090376|ENST00000261233|IRAK3	nc|ENSG00000090376|Q9Y616-2|IRAK3	nc|ENSG00000090376|Q9Y616-2|IRAK3	MSMS	A375_MHC_IP_R1	1	359.9332275390625	3	359.885353	1076.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.519	1	24.519	24.019	25.019	0								0	0	0	0.15486	1	6977	6977		13.615	3.4643	1				63239	1951	46164	46523	61588	61588					0.09897711122607689
YIRRHVLN	8	Unmodified	_YIRRHVLN_					0	0	0			REV__nc|ENSG00000145495|O60337-6|MARCHF6	REV__nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-MSMS	A375_MHC_IP_R1	1	1071.6123046875	1	1070.62177	1069.6145	0.23765	0.00025443	0.2472	0.00026466	0.48485	0.00051909	1071.623689553879	118.42	3.0448	118.42	116.09	119.13	0					97	54	3	0	0	0	0.77675	1	43554	43554		9.3474	0.75416	1	189880000	+		63240	19477	46165	46524	61589	61589					0.08247379902513785
YIRRRDYFYNY	11	Unmodified	_YIRRRDYFYNY_					0	0	0			REV__ENST00000584561.1_1_17:8109844-8110310:-|nuORF	REV__ENST00000584561.1_1_17:8109844-8110310:-|nuORF	MSMS	A375_MHC_IP_R1	1	543.6613159179688	3	543.603797	1627.78956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.544	1	95.544	95.044	96.044	0								0	0	0	0.16332	1	35118	35118		1.4551	1.3603	1		+		63241	21534	46166	46525	61590	61590					0.0007771018624680437
YIRRRDYFYNY	11	Unmodified	_YIRRRDYFYNY_					0	0	0			REV__ENST00000584561.1_1_17:8109844-8110310:-|nuORF	REV__ENST00000584561.1_1_17:8109844-8110310:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	543.6532592773438	3	543.603797	1627.78956	-0.64821	-0.00035237	-1.9296	-0.0010489	-2.5778	-0.0014013	543.6045667321446	94.166	0.1507	94.166	94.09	94.241	0					4	2	2	0	0	0	1.001	1	34636	34636		0.50596	0.41111	1	755640	+		63242	21534	46166	46525	61591	61591					0.0007771018624680437
YIRTHTHIYVY	11	Unmodified	_YIRTHTHIYVY_					0	0	0		ENST00000407010.6_2_7:16128723-16129239:-|nuORF	ENST00000407010.6_2_7:16128723-16129239:-|nuORF	ENST00000407010.6_2_7:16128723-16129239:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	488.46966552734375	3	489.257738	1464.75138	-0.29342	-0.00014356	0.28616	0.00014	-0.0072644	-3.5542E-06	489.25806618988685	64.082	0.35425	64.082	63.837	64.191	0					8	6	2	0	0	0	0.99999	1	23218	23218		3.0723	1.9625	1	1191200			63243	11607	46167	46526	61592	61592					0.037598242715830565
YIRTHTHIYVY	11	Unmodified	_YIRTHTHIYVY_					0	0	0		ENST00000407010.6_2_7:16128723-16129239:-|nuORF	ENST00000407010.6_2_7:16128723-16129239:-|nuORF	ENST00000407010.6_2_7:16128723-16129239:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		3	489.257738	1464.75138	-0.5136	-0.00025128	-0.34444	-0.00016852	-0.85804	-0.0004198	489.2576363320343	63.213	0.35401	63.956	63.788	64.142	0.74263	-0.062992	-0.00048738	NaN	3.0723	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	889080			63244	11607	46167	46526							0.037598242715830565
YISDNVNKY	9	Unmodified	_YISDNVNKY_					0	0	0		ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	ENSG00000100644|ENST00000337138|HIF1A	ENSG00000100644|ENST00000337138|HIF1A	MULTI-SECPEP	A375_MHC_IP_R1	1	558.6714477539062	2	558.272021	1114.52949	-0.74427	-0.0004155	-0.026539	-1.4816E-05	-0.77081	-0.00043032	558.2720343189809	32.51	0.40147	32.51	32.333	32.734	0					17	7	3	0	0	0	0.16595	1	10514	10514		61.602	30.965	1	8172000			63245	2206	46168	46527	61593	61593					-0.023194551446067635
YISLIQGGT	9	Unmodified	_YISLIQGGT_					0	0	0			REV__ENST00000479344.1_3_1:161129408-161130229:+|nuORF	REV__ENST00000479344.1_3_1:161129408-161130229:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	476.322509765625	2	476.260925	950.507297	-0.63827	-0.00030399	0.30582	0.00014565	-0.33246	-0.00015834	476.26105567538997	50.78	1.6722	51.534	50.65	52.322	0.75406					60	32	4	0	0	0	0.60101	1	19235	19235		14.838	1.7958	1	20739000	+		63246	25231	46169	46528	61594	61594					0.03006365177634507
YISPEECEAL	10	Unmodified	_YISPEECEAL_					0	0	0			REV__nc|ENSG00000110697|O00562-2|PITPNM1	REV__nc|ENSG00000110697|O00562-2|PITPNM1	MULTI-SECPEP	A375_MHC_IP_R2	2	577.673828125	2	577.257722	1152.50089	-0.36001	-0.00020782	0.3562	0.00020562	-0.0038059	-2.197E-06	577.2578641167191	97.142	0.65972	97.898	97.519	98.178	0.75586					23	12	2	0	0	0	0.24499	1	36873	36873		61.357	34.474	1	6032000	+		63247	17636	46170	46529	61595	61595					-0.06925940836049449
YISVTVPKM	9	Unmodified	_YISVTVPKM_					0	0	0		ENSG00000184022|ENST00000642090|OR2T10;ENSG00000203661|ENST00000641363|OR2T5;ENSG00000182783|ENST00000641069|OR2T29;ENSG00000196944|ENST00000366473|OR2T4;nc|ENSG00000196944|Q8NH00|OR2T4	ENSG00000184022|ENST00000642090|OR2T10	ENSG00000184022|ENST00000642090|OR2T10	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1869506835938	2	519.288628	1036.5627	-0.84798	-0.00044035	-0.25049	-0.00013008	-1.0985	-0.00057042	519.2884076663821	41.349	0.66101	42.124	41.946	42.607	0.77451					14	12	2	0	0	0	0.74412	1	15351	15351		14.838	2.3067	1	2352400			63248	8437	46171	46530	61596	61596					0.045884553737323586
YITAVDKDI	9	Unmodified	_YITAVDKDI_					0	0	0		tr|U7STE7|U7STE7_FUSNUYhcGPDDEXKnucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01383PE=4SV=1	tr|U7STE7|U7STE7_FUSNUYhcGPDDEXKnucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01383PE=4SV=1	tr|U7STE7|U7STE7_FUSNUYhcGPDDEXKnucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01383PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	518.9710083007812	2	519.279315	1036.54408	-0.63711	-0.00033084	-0.37741	-0.00019598	-1.0145	-0.00052682	519.2789767039673	46.015	0.35295	46.78	46.503	46.855	0.76519					12	6	2	0	0	0	0.73363	1	17119	17119		15.847	1.2655	1	2763700			63249	29684	46172	46531	61597	61597					0.027266170035318282
YITERIIAV	9	Unmodified	_YITERIIAV_					0	0	0		nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-4|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	MULTI-SECPEP	A375_MHC_IP_R1	1	539.718017578125	2	539.318774	1076.623	-0.69219	-0.00037331	0.31345	0.00016905	-0.37874	-0.00020426	539.3188671321747	76.011	0.50487	76.011	75.815	76.319	0					13	9	2	0	0	0	0.36673	1	27702	27702		45.74	23.004	1	2595900			63250	4765	46173	46532	61598	61598					0.08774889028472899
YITQLRQQ	8	Unmodified	_YITQLRQQ_					0	0	0		CON__Q2UVX4	CON__Q2UVX4	CON__Q2UVX4	MULTI-SECPEP	A375_MHC_IP_R1	1	525.1889038085938	2	525.290548	1048.56654	-0.73445	-0.0003858	0.22321	0.00011725	-0.51125	-0.00026855	525.2902720669769	133.07	0.25549	133.07	132.95	133.2	0					7	4	2	0	0	0	0.972	1	51327	51327		9.3474	1.4373	1	3063700		+	63251	614	46174	46533	61599	61599					0.044202611917853574
YITTARAY	8	Unmodified	_YITTARAY_					0	0	0			REV__ENST00000471654.1_1_2:23914526-23929531:+|nuORF	REV__ENST00000471654.1_1_2:23914526-23929531:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	480.1526794433594	2	479.753267	957.491981	-0.95977	-0.00046045	0.13043	6.2572E-05	-0.82934	-0.00039788	479.753429533646	59.376	0.40292	60.123	59.946	60.349	0.74714					12	7	2	0	0	0	0.94479	1	22507	22507		13.508	0	1	1326300	+		63252	18095	46175	46534	61600	61600					0.011534983804153853
YIVARQSMCWF	11	Unmodified	_YIVARQSMCWF_					0	0	0			REV__ENST00000602430.1_1_3:51575458-51575656:+|nuORF	REV__ENST00000602430.1_1_3:51575458-51575656:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	468.95782470703125	3	468.558142	1402.6526	-0.15487	-7.2565E-05	-0.55968	-0.00026224	-0.71455	-0.00033481	468.5578878977381	51.599	0.35426	51.599	51.424	51.778	0					16	6	3	0	0	0	0.73195	1	18356	18356		7.0371	0.41363	1	1970500	+		63253	26512	46176	46535	61601	61601					-0.03262238289335073
YIVARQSMCWF	11	Unmodified	_YIVARQSMCWF_					0	0	0			REV__ENST00000602430.1_1_3:51575458-51575656:+|nuORF	REV__ENST00000602430.1_1_3:51575458-51575656:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	468.32098388671875	3	468.558142	1402.6526	-0.15487	-7.2565E-05	-0.55968	-0.00026224	-0.71455	-0.00033481	468.5578878977381	51.599	0.35426	51.599	51.424	51.778	0					16	6	3	0	0	0	0.98994	1	18345	18345		10.527	2.241	1	1970500	+		63254	26512	46176	46535	61602	61602					-0.03262238289335073
YIVARQSMCWF	11	Unmodified	_YIVARQSMCWF_					0	0	0			REV__ENST00000602430.1_1_3:51575458-51575656:+|nuORF	REV__ENST00000602430.1_1_3:51575458-51575656:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	468.3205261230469	3	468.558142	1402.6526	-0.71117	-0.00033323	-0.55348	-0.00025934	-1.2647	-0.00059256	468.55795824265005	50.972	0.45416	51.726	51.462	51.917	0.75406					12	8	2	0	0	0	0.99165	1	19191	19191		8.7518	0	1	3019100	+		63255	26512	46176	46535	61603	61603					-0.03262238289335073
YIVKDIQEQT	10	Unmodified	_YIVKDIQEQT_					0	0	0			REV__tr|U7T0H7|U7T0H7_FUSNUAcetaldehydedehydrogenase(Acetylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00826PE=4SV=1	REV__tr|U7T0H7|U7T0H7_FUSNUAcetaldehydedehydrogenase(Acetylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00826PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	619.2263793945312	2	618.82716	1235.63977	-0.38228	-0.00023657	-3.3458	-0.0020705	-3.7281	-0.0023071	618.8258396088354	96.127	0.40753	96.127	95.917	96.325	0					15	7	3	0	0	0	0.91773	1	35386	35386		15.248	9.5166	1	2058600	+		63256	28679	46177	46536	61604	61604					0.031373451237413974
YIVVSVFFEM	10	Unmodified	_YIVVSVFFEM_					0	0	0			REV__SLC38A4|p.V234E|1|0.07|ENSG00000139209|chr12:46779627-46779627|A/T|missense_variant	REV__SLC38A4|p.V234E|1|0.07|ENSG00000139209|chr12:46779627-46779627|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	617.7162475585938	2	617.314843	1232.61513	-0.46325	-0.00028597	3.5842	0.0022126	3.1209	0.0019266	617.3164081075116	83.912	0.15256	83.912	83.837	83.989	0					4	2	2	0	0	0	0.90853	1	30750	30750		15.847	6.4641	1	1731200	+		63257	27991	46178	46537	61605	61605					0.008129937166813761
YIWCVMGLF	9	Unmodified	_YIWCVMGLF_					0	0	0			REV__ENST00000366996.1_1_1:211966507-212002450:-|nuORF	REV__ENST00000366996.1_1_1:211966507-212002450:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	566.289306640625	2	566.271924	1130.52929	-0.30361	-0.00017193	-0.72059	-0.00040805	-1.0242	-0.00057998	566.2721987735767	79.389	1.0724	79.389	78.859	79.931	0					22	20	2	0	0	0	0.64653	1	28975	28975		20.871	0	1	737080	+		63258	23949	46179	46538	61606	61606					-0.030748696698310596
YIWNFYIDFHH	11	Unmodified	_YIWNFYIDFHH_					0	0	0			REV__tr|U7SF08|U7SF08_FUSNUCRISPRtypeIII-a/mtube-associatedproteincsm6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02349PE=4SV=1	REV__tr|U7SF08|U7SF08_FUSNUCRISPRtypeIII-a/mtube-associatedproteincsm6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02349PE=4SV=1	MSMS	A375_MHC_IP_R1	1	777.8593139648438	2	777.861869	1553.70918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.453	1	97.453	96.953	97.953	0								0	0	0	0.16332	1	35804	35804		1.4819	0.15237	1		+		63259	28164	46180	46539	61607	61607					-0.04552151136840621
YIWRIGTDGR	10	Unmodified	_YIWRIGTDGR_					0	0	0		ENSG00000183150|ENST00000651487|GPR19	ENSG00000183150|ENST00000651487|GPR19	ENSG00000183150|ENST00000651487|GPR19	MULTI-SECPEP	A375_MHC_IP_R2	2	619.2252807617188	2	618.827829	1235.64111	-0.46556	-0.0002881	-3.4789	-0.0021528	-3.9445	-0.0024409	618.8255141592473	95.267	0.40993	96.017	95.785	96.195	0.75044					13	7	3	0	0	0	0.91442	1	36238	36238		16.149	3.1066	1	1502300			63260	8469	46181	46540	61608	61608					0.03271024003174716
YIWRTRPFLRF	11	Unmodified	_YIWRTRPFLRF_					0	0	0			REV__ENST00000371117.7_1_6:51720856-51735327:-|nuORF	REV__ENST00000371117.7_1_6:51720856-51735327:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	388.9642639160156	4	389.472761	1553.86194	0.0061952	2.4129E-06	-1.1975	-0.00046639	-1.1913	-0.00046397	389.4722736534859	25.782	0.65988	25.782	25.357	26.017	0					21	12	3	0	0	0	1.0014	1	7468	7468		0.08335	0	1	3428000	+		63261	24041	46182	46541	61609	61609					0.10716089050447408
YIWSLDTQY	9	Unmodified	_YIWSLDTQY_					0	0	0		ENSG00000105329|ENST00000221930|TGFB1	ENSG00000105329|ENST00000221930|TGFB1	ENSG00000105329|ENST00000221930|TGFB1	MULTI-SECPEP	A375_MHC_IP_R1	1	594.4750366210938	2	594.782222	1187.54989	-0.48537	-0.00028869	-0.60992	-0.00036277	-1.0953	-0.00065146	594.7818488069463	37.872	0.61286	37.872	37.505	38.118	0					19	11	2	0	0	0	0.80005	1	12693	12693		2.0598	0	1	1799700			63262	2591	46183	46542	61610	61610					-0.03638284484804899
YIWVQFLY	8	Unmodified	_YIWVQFLY_					0	0	0		ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-3|GSAP;ENSG00000186088|ENST00000257626|GSAP;nc|ENSG00000186088|A4D1B5-2|GSAP	ENST00000334003.11_1_7:76959552-77026708:-|nuORF	ENST00000334003.11_1_7:76959552-77026708:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	566.6600341796875	2	566.29731	1130.58007	-0.34619	-0.00019604	0.70633	0.00039999	0.36014	0.00020395	566.2978025573559	64.022	0.40495	64.762	64.446	64.85	0.74022					11	7	2	0	0	0	0.90224	1	24232	24232		19.439	4.8573	1	1272900			63263	8717	46184	46543	61611	61611					0.02000118971068332
YIYENPEF	8	Unmodified	_YIYENPEF_					0	0	0			REV__ACO2|p.H44Y|1|0.64|ENSG00000100412|chr22:41499819-41499819|C/T|missense_variant	REV__ACO2|p.H44Y|1|0.64|ENSG00000100412|chr22:41499819-41499819|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	537.6876831054688	2	537.742565	1073.47058	-0.65378	-0.00035156	-0.36733	-0.00019753	-1.0211	-0.0005491	538.2433054432149	81.557	0.45551	81.557	81.353	81.809	0					16	8	2	0	0	0	0.77515	1	29801	29801		12.532	0	1	1562800	+		63264	15295	46185	46544	61612	61612					-0.06321931438969841
YIYFVSSWGIY	11	Unmodified	_YIYFVSSWGIY_					0	0	0			REV__nc|ENSG00000179520|Q8NDX2-2|SLC17A8	REV__nc|ENSG00000179520|Q8NDX2-2|SLC17A8	MULTI-MSMS	A375_MHC_IP_R1	1	699.7423706054688	2	699.342446	1396.67034	-0.51061	-0.00035709	1.0784	0.00075414	0.56774	0.00039705	699.3432155479778	71.005	0.4621	71.005	70.749	71.211	0					16	8	3	0	0	0	0.67989	1	25826	25826		17.113	6.289	1	2590400	+		63265	21567	46186	46545	61613	61613					-0.012128764911949474
YIYHGTVKL	9	Unmodified	_YIYHGTVKL_					0	0	0		nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	MULTI-MSMS	A375_MHC_IP_R1	1	365.6060485839844	3	365.206203	1092.59678	0.27301	9.9705E-05	0.086492	3.1587E-05	0.3595	0.00013129	365.2061956456058	42.162	0.50472	42.162	41.982	42.487	0					21	9	3	0	0	0	0.030891	1	14602	14602		74.2	33.96	1	12255000			63266	3847	46187	46546	61614	61614					0.05418619857005069
YIYHGTVKL	9	Unmodified	_YIYHGTVKL_					0	0	0		nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	MULTI-MSMS	A375_MHC_IP_R1	1	547.7052612304688	2	547.305667	1092.59678	-0.49324	-0.00026995	-0.36693	-0.00020082	-0.86017	-0.00047077	547.3054448094506	42.158	0.45444	42.158	41.932	42.386	0					18	8	3	0	0	0	0.058226	1	14619	14619		75.761	29.74	1	3657800			63267	3847	46187	46546	61615	61615					0.05418619857005069
YIYHGTVKL	9	Unmodified	_YIYHGTVKL_					0	0	0		nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	nc|ENSG00000123444|Q9NVX7-1|KBTBD4	MULTI-SECPEP	A375_MHC_IP_R2	2	547.1705932617188	2	547.305667	1092.59678	-0.99045	-0.00054208	-0.54786	-0.00029984	-1.5383	-0.00084193	547.3052910023636	41.342	0.40496	42.117	41.895	42.3	0.77451					17	7	3	0	0	0	0.4465	1	15288	15288		31.268	10.815	1	2209400			63268	3847	46187	46546	61616	61616					0.05418619857005069
YIYKYVTY	8	Unmodified	_YIYKYVTY_					0	0	0			REV__ENST00000345330.8_1_15:73852933-73853083:-|nuORF	REV__ENST00000345330.8_1_15:73852933-73853083:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	556.642333984375	2	556.786776	1111.559	-0.68744	-0.00038276	1.1027	0.00061397	0.41525	0.00023121	557.288350162224	52.77	0.20403	52.77	52.643	52.847	0					5	3	2	0	0	0	0.93416	1	18777	18777		20.871	10.797	1	719220	+		63269	23770	46188	46547	61617	61617					0.007681088715116857
YKDEERLWGE	10	Unmodified	_YKDEERLWGE_					0	0	0		ENSG00000152049|ENST00000281830|KCNE4;nc|ENSG00000152049|Q8WWG9|KCNE4	ENSG00000152049|ENST00000281830|KCNE4	ENSG00000152049|ENST00000281830|KCNE4	MSMS	A375_MHC_IP_R1	1	663.0307006835938	2	662.812042	1323.60953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.321	1	19.321	18.821	19.821	0								0	0	0	0.15465	1	4695	4695		5.7319	0	1				63270	5940	46189	46548	61618	61618					-0.03933013541427499
YKDLAKLLY	9	Unmodified	_YKDLAKLLY_					0	0	0			REV__ENST00000537568.1_1_12:16747235-16762728:-|nuORF	REV__ENST00000537568.1_1_12:16747235-16762728:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	376.92120361328125	3	376.221742	1125.6434	0.21408	8.0541E-05	3.0041	0.0011302	3.2181	0.0012107	376.22336608334655	25.588	0.61021	25.588	25.306	25.917	0					21	11	3	0	0	0	0.71341	1	7505	7505		12.873	1.9736	1	5852000	+		63271	16372	46190	46549	61619	61619					0.08560059688284127
YKDYELMF	8	Unmodified	_YKDYELMF_					0	0	0		ENSG00000116991|ENST00000674635|SIPA1L2	ENSG00000116991|ENST00000674635|SIPA1L2	ENSG00000116991|ENST00000674635|SIPA1L2	MULTI-SECPEP	A375_MHC_IP_R2	2	369.4444580078125	3	370.172171	1107.49468	0.33593	0.00012435	0.46149	0.00017083	0.79743	0.00029519	370.17220694822913	27.277	0.30582	27.955	27.741	28.047	0.67857					6	5	2	0	0	0	0.972	1	9225	9225		3.9444	0	1	942370			63272	3449	46191	46550	61620	61620					-0.05476414276949981
YKEMQIYYFER	11	Unmodified	_YKEMQIYYFER_					0	0	0			REV__ENSG00000117707|ENST00000366958|PROX1	REV__ENSG00000117707|ENST00000366958|PROX1	MSMS	A375_MHC_IP_R1	1	785.7731323242188	2	785.373952	1568.73335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.11	1	144.11	143.61	144.61	0								0	0	0	0.1636	1	55271	55271		0	0	1		+		63273	18019	46192	46551	61621	61621					-0.028266787654956715
YKFDYEIEY	9	Unmodified	_YKFDYEIEY_					0	0	0			REV__tr|U7SSR1|U7SSR1_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01459PE=4SV=1	REV__tr|U7SSR1|U7SSR1_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01459PE=4SV=1	MSMS	A375_MHC_IP_R2	2	635.1875610351562	2	635.287337	1268.56012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.531	1	35.283	34.783	35.783	0.75225								0	0	0	0.15486	1	12465	12465		10.824	0	1		+		63274	28444	46193	46552	61622	61622					-0.0634172155023407
YKFERPQYA	9	Unmodified	_YKFERPQYA_					0	0	0		ENSG00000123562|ENST00000441076|MORF4L2;ENST00000560710.1_1_15:79184565-79186592:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1	ENSG00000123562|ENST00000441076|MORF4L2;nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	A375_MHC_IP_R2	2	601.7029418945312	2	601.303655	1200.59276	-0.87591	-0.00052669	0.39572	0.00023795	-0.48018	-0.00028874	601.3035829974843	33.439	0.35597	34.191	33.992	34.348	0.75225					10	6	2	0	0	0	0.11448	1	12006	12006		59.368	36.22	1	2878800			63275	3854;8692	46194	46553	61623	61623					0.0004853036330132454
YKFERPQYA	9	Unmodified	_YKFERPQYA_					0	0	0		ENSG00000123562|ENST00000441076|MORF4L2;ENST00000560710.1_1_15:79184565-79186592:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1	ENSG00000123562|ENST00000441076|MORF4L2;nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MATCH	A375_MHC_IP_R1	1		2	601.303655	1200.59276	-0.39189	-0.00023564	-0.03891	-2.3397E-05	-0.4308	-0.00025904	601.8048638578845	34.129	0.3031	34.129	33.95	34.253	0	-0.030992	-0.00015453	NaN	59.368	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3534500			63276	3854;8692	46194	46553							0.0004853036330132454
YKFHLLCCASI	11	Unmodified	_YKFHLLCCASI_					0	0	0		L1MB7_dup9932|chr8:58560717-58562310:+|1.3153910631107617|0.0447379494579893|4.88|444.0|105|3|anti-sense	L1MB7_dup9932|chr8:58560717-58562310:+|1.3153910631107617|0.0447379494579893|4.88|444.0|105|3|anti-sense	L1MB7_dup9932|chr8:58560717-58562310:+|1.3153910631107617|0.0447379494579893|4.88|444.0|105|3|anti-sense	MSMS	A375_MHC_IP_R1	1	433.2853698730469	3	433.219238	1296.63589	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.16	1	133.16	132.66	133.66	0								0	0	0	0.16302	1	51351	51351		1.2148	0	1				63277	14257	46195	46554	61624	61624					-0.0005673917528383754
YKFKFKLRGKI	11	Unmodified	_YKFKFKLRGKI_					0	0	0		KDM5B|p.I282Yfs*17|1|0.1|ENSG00000117139|chr1:202762773-202762774|-/TTAAACTTAAATTTGTACCTTAAATA|frameshift_variant	KDM5B|p.I282Yfs*17|1|0.1|ENSG00000117139|chr1:202762773-202762774|-/TTAAACTTAAATTTGTACCTTAAATA|frameshift_variant	KDM5B|p.I282Yfs*17|1|0.1|ENSG00000117139|chr1:202762773-202762774|-/TTAAACTTAAATTTGTACCTTAAATA|frameshift_variant	MSMS	A375_MHC_IP_R1	1	714.8269653320312	2	714.447914	1426.88128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.2	1	144.2	143.7	144.7	0								0	0	0	0.16354	1	55306	55306		0.30703	0.30703	1				63278	14205	46196	46555	61625	61625					0.18491045341329482
YKFLNDMLY	9	Unmodified	_YKFLNDMLY_					0	0	0			REV__ENSG00000140299|ENST00000607373|BNIP2	REV__ENSG00000140299|ENST00000607373|BNIP2	MSMS	A375_MHC_IP_R2	2	402.9212341308594	3	402.86697	1205.57908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.704	1	37.475	36.975	37.975	0.7709								0	0	0	0.15486	1	13396	13396		2.086	0	1		+		63279	19201	46197	46556	61626	61626					-0.015484634601534708
YKFRLLLL	8	Unmodified	_YKFRLLLL_					0	0	0		ENSG00000121578|ENST00000393765|B4GALT4	ENSG00000121578|ENST00000393765|B4GALT4	ENSG00000121578|ENST00000393765|B4GALT4	MULTI-SECPEP	A375_MHC_IP_R1	1	532.7319946289062	2	533.344595	1064.67464	-0.38172	-0.00020359	-3.6501	-0.0019468	-4.0318	-0.0021504	533.342827038768	92.693	0.40706	92.693	92.515	92.922	0					11	7	2	0	0	0	0.972	1	34105	34105		4.756	0	1	1100600			63280	3725	46198	46557	61627	61627					0.1448867751303169
YKHAQHHDRV	10	Unmodified	_YKHAQHHDRV_					0	0	0		ENSG00000130940|ENST00000377022|CASZ1	ENSG00000130940|ENST00000377022|CASZ1	ENSG00000130940|ENST00000377022|CASZ1	MSMS	A375_MHC_IP_R2	2	430.9313049316406	3	430.886527	1289.63775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.515	1	40.29	39.79	40.79	0.77451								0	0	0	0.15435	1	14595	14595		3.5871	0.26742	1				63281	4295	46199	46558	61628	61628					0.004517739491575412
YKHKDSESSP	10	Unmodified	_YKHKDSESSP_					0	0	0		ENST00000584570.5_1_17:73030172-73036433:+|nuORF	ENST00000584570.5_1_17:73030172-73036433:+|nuORF	ENST00000584570.5_1_17:73030172-73036433:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	588.729736328125	2	589.277835	1176.54112	-0.87031	-0.00051286	0.2965	0.00017472	-0.57382	-0.00033814	589.2775211255074	51.903	0.71314	52.656	52.219	52.932	0.75225					27	13	3	0	0	0	0.70496	1	19446	19446		10.074	1.4806	1	3374300			63282	13707	46200	46559	61629	61629					-0.04009258121300263
YKIFMAVVL	9	Unmodified	_YKIFMAVVL_					0	0	0			REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MULTI-SECPEP	A375_MHC_IP_R1	1	541.9000854492188	2	542.317189	1082.61982	-0.95593	-0.00051842	-0.86748	-0.00047045	-1.8234	-0.00098887	542.8183299953911	147.37	0.053726	147.37	147.34	147.4	0					7	5	2	0	0	0	0.8175	1	56314	56314		0.6015	0	1	42341	+		63283	19903	46201	46560	61630	61630					0.08181922650101114
YKKGPRWNRVR	11	Unmodified	_YKKGPRWNRVR_					0	0	0		ENSG00000096080|ENST00000372133|MRPS18A;nc|ENSG00000096080|Q9NVS2-2|MRPS18A	ENSG00000096080|ENST00000372133|MRPS18A	ENSG00000096080|ENST00000372133|MRPS18A	MSMS	A375_MHC_IP_R2	2	730.335205078125	2	730.423294	1458.83203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.42	1	144.45	143.95	144.95	0.024414								0	0	0	0.16354	1	56414	56414		0.30703	0	1				63284	2055	46202	46561	61631	61631					0.12097150105068977
YKKKKIQVFEG	11	Unmodified	_YKKKKIQVFEG_					0	0	0		ENST00000290158.8_1_17:45761708-45761762:+|nuORF	ENST00000290158.8_1_17:45761708-45761762:+|nuORF	ENST00000290158.8_1_17:45761708-45761762:+|nuORF	MSMS	A375_MHC_IP_R2	2	684.403076171875	2	684.405912	1366.79727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.74	1	109.49	108.99	109.99	0.74684								0	0	0	0.16334	1	41055	41055		1.3295	0	1				63285	10468	46203	46562	61632	61632					0.12854469453782258
YKKLAGRSGTR	11	Unmodified	_YKKLAGRSGTR_					0	0	0		AluSq_dup1109|chr1:161212562-161212852:-|1.4642519569778285|0.0170353827791468|6.43|472.0|2|1|sense	AluSq_dup1109|chr1:161212562-161212852:-|1.4642519569778285|0.0170353827791468|6.43|472.0|2|1|sense	AluSq_dup1109|chr1:161212562-161212852:-|1.4642519569778285|0.0170353827791468|6.43|472.0|2|1|sense	MULTI-SECPEP	A375_MHC_IP_R2	2	412.58770751953125	3	412.910561	1235.70985	-0.15689	-6.4783E-05	-0.688	-0.00028408	-0.84489	-0.00034886	413.24469461683793	28.255	1.0134	28.934	28.047	29.06	0.67857					28	19	2	0	0	0	0.99424	1	9438	9438		2.2527	0	1	3164500			63286	116	46204	46563	61633	61633					0.10142688302880742
YKKTLYKLYRK	11	Unmodified	_YKKTLYKLYRK_					0	0	0			REV__ENSG00000116251|ENST00000234875|RPL22	REV__ENSG00000116251|ENST00000234875|RPL22	MSMS	A375_MHC_IP_R1	1	752.5199584960938	2	752.455936	1502.89732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.18	1	146.18	145.68	146.68	0								0	0	0	0.1636	1	55939	55939		0	0	1		+		63287	17950	46205	46564	61634	61634					0.16598706787590345
YKKVVYRQY	9	Unmodified	_YKKVVYRQY_					0	0	0		ENST00000490639.5_1_3:148895590-148939579:-|nuORF;ENSG00000047457|ENST00000264613|CP;ENST00000467010.2_1_8:92169765-92170749:+|nuORF	ENST00000490639.5_1_3:148895590-148939579:-|nuORF;ENST00000467010.2_1_8:92169765-92170749:+|nuORF	ENST00000490639.5_1_3:148895590-148939579:-|nuORF	MSMS	A375_MHC_IP_R2	2	623.8292846679688	2	623.850773	1245.68699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.752	1	90.484	89.984	90.984	0.7318								0	0	0	0.15486	1	34151	34151		7.9102	0.3012	1				63288	1200;12271	46206	46565	61635	61635					0.07397669185434097
YKKYFRIRNIY	11	Unmodified	_YKKYFRIRNIY_					0	0	0			REV__tr|U7T1W4|U7T1W4_FUSNUMATEeffluxfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00610PE=4SV=1	REV__tr|U7T1W4|U7T1W4_FUSNUMATEeffluxfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00610PE=4SV=1	MSMS	A375_MHC_IP_R2	2	521.9647216796875	3	521.964666	1562.87217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.94	1	29.639	29.139	30.139	0.69872								0	0	0	0.16334	1	10058	10058		0.45452	0.35968	1		+		63289	28708	46207	46566	61636	61636					0.11324651985023593
YKLHFIFRHKH	11	Unmodified	_YKLHFIFRHKH_					0	0	0		ENSG00000153132|ENST00000325617|CLGN	ENSG00000153132|ENST00000325617|CLGN	ENSG00000153132|ENST00000325617|CLGN	MSMS	A375_MHC_IP_R2	2	763.4288940429688	2	763.430587	1524.84662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.05	1	118.66	118.16	119.16	0.60909								0	0	0	0.16302	1	44784	44784		2.9952	0.26005	1				63290	6009	46208	46567	61637	61637					0.10519222253242333
YKLVPQQLAH	10	Unmodified	_YKLVPQQLAH_					0	0	0		ENSG00000135940|ENST00000258424|COX5B	ENSG00000135940|ENST00000258424|COX5B	ENSG00000135940|ENST00000258424|COX5B	MULTI-SECPEP	A375_MHC_IP_R1	1	400.2987365722656	3	399.564391	1195.67134	-0.23914	-9.5553E-05	0.096575	3.8588E-05	-0.14257	-5.6965E-05	399.5644074639996	43.95	0.45943	43.95	43.757	44.216	0					19	8	3	0	0	0	0.1433	1	15338	15338		55.235	48.198	1	4091100			63291	4731	46209	46568	61638	61638					0.08133382668370359
YKLVPQQLAH	10	Unmodified	_YKLVPQQLAH_					0	0	0		ENSG00000135940|ENST00000258424|COX5B	ENSG00000135940|ENST00000258424|COX5B	ENSG00000135940|ENST00000258424|COX5B	MULTI-SECPEP	A375_MHC_IP_R2	2	399.9644470214844	3	399.564391	1195.67134	0.063722	2.5461E-05	-0.71685	-0.00028643	-0.65313	-0.00026097	399.56403413439057	43.23	0.60767	44.003	43.573	44.181	0.7724					16	11	2	0	0	0	0.22217	1	16110	16110		40.725	36.535	1	4964300			63292	4731	46209	46568	61639	61639					0.08133382668370359
YKMDFKGDVSG	11	Unmodified	_YKMDFKGDVSG_					0	0	0		SEC31A|p.S81F|1|0.27|ENSG00000138674|chr4:82878890-82878890|G/A|missense_variant	SEC31A|p.S81F|1|0.27|ENSG00000138674|chr4:82878890-82878890|G/A|missense_variant	SEC31A|p.S81F|1|0.27|ENSG00000138674|chr4:82878890-82878890|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	623.6902465820312	2	623.792263	1245.56997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.904	1	43.676	43.176	44.176	0.7724								0	0	0	0.16138	1	15973	15973		11.495	0	1				63293	29126	46210	46569	61640	61640					-0.04298856816512853
YKMKMVKLAR	10	Unmodified	_YKMKMVKLAR_					0	0	0			REV__ENST00000481435.5_1_3:169693473-169703658:+|nuORF	REV__ENST00000481435.5_1_3:169693473-169703658:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	422.9822082519531	3	423.250761	1266.73045	-0.29237	-0.00012375	-0.34117	-0.0001444	-0.63354	-0.00026815	423.250561199026	132.45	0.70796	132.45	132.03	132.74	0					19	13	2	0	0	0	0.95032	1	51040	51040		0.62683	0.12087	1	4804200	+		63294	16182	46211	46570	61641	61641					0.1077581936669958
YKPNLIQAL	9	Unmodified	_YKPNLIQAL_					0	0	0		nc|ENSG00000170802|P32314-2|FOXN2;ENSG00000170802|ENST00000340553|FOXN2	nc|ENSG00000170802|P32314-2|FOXN2	nc|ENSG00000170802|P32314-2|FOXN2	MULTI-SECPEP	A375_MHC_IP_R1	1	530.713134765625	2	530.313492	1058.61243	-0.63066	-0.00033445	-0.66476	-0.00035253	-1.2954	-0.00068698	530.3132274740635	76.261	0.85852	76.261	75.764	76.622	0					34	16	3	0	0	0	0.023756	1	27775	27775		92.822	48.415	1	3153800			63295	7541	46212	46571	61642	61642					0.08546906374044738
YKPNLIQAL	9	Unmodified	_YKPNLIQAL_					0	0	0		nc|ENSG00000170802|P32314-2|FOXN2;ENSG00000170802|ENST00000340553|FOXN2	nc|ENSG00000170802|P32314-2|FOXN2	nc|ENSG00000170802|P32314-2|FOXN2	MULTI-MSMS	A375_MHC_IP_R2	2	530.7123413085938	2	530.313492	1058.61243	-0.63897	-0.00033886	-1.3084	-0.00069385	-1.9474	-0.0010327	530.3128185881654	75.27	0.81306	76.008	75.672	76.485	0.73808					25	15	2	0	0	0	0.022213	1	28573	28573		81.613	21.224	1	3696500			63296	7541	46212	46571	61643	61643					0.08546906374044738
YKPVFVTEI	9	Unmodified	_YKPVFVTEI_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-SECPEP	A375_MHC_IP_R1	1	548.7078857421875	2	548.307875	1094.6012	-0.58033	-0.0003182	0.17881	9.8042E-05	-0.40152	-0.00022016	548.3078558824251	83.523	0.71159	83.523	83.175	83.887	0					27	13	3	0	0	0	0.056023	1	30555	30555		75.761	25.828	1	4342800			63297	9124	46213	46572	61644	61644					0.05768084279884533
YKPVFVTEI	9	Unmodified	_YKPVFVTEI_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	A375_MHC_IP_R2	2	548.9961547851562	2	548.307875	1094.6012	-0.79955	-0.0004384	0.44438	0.00024365	-0.35517	-0.00019474	548.3081681621101	82.593	0.50519	83.336	83.093	83.598	0.74293					17	9	2	0	0	0	0.063448	1	31361	31361		72.968	25.374	1	4126500			63298	9124	46213	46572	61645	61645					0.05768084279884533
YKRIYVKFIEN	11	Unmodified	_YKRIYVKFIEN_					0	0	0		nc|ENSG00000060749|Q2KHR3-2|QSER1;nc|ENSG00000060749|Q2KHR3|QSER1;ENSG00000060749|ENST00000650167|QSER1	nc|ENSG00000060749|Q2KHR3-2|QSER1	nc|ENSG00000060749|Q2KHR3-2|QSER1	MULTI-MSMS	A375_MHC_IP_R1	1	737.8168334960938	2	736.916644	1471.81874	-0.43826	-0.00032296	0.23346	0.00017204	-0.2048	-0.00015092	736.9168011125629	79.239	0.45901	79.239	79.011	79.47	0					18	8	3	0	0	0	0.73557	1	28933	28933		2.086	0	1	4117600			63299	1315	46214	46573	61646	61646					0.10169854482523988
YKRMHRRKKLY	11	Unmodified	_YKRMHRRKKLY_					0	0	0		ENST00000472297.2_1_19:24014717-24015296:+|nuORF	ENST00000472297.2_1_19:24014717-24015296:+|nuORF	ENST00000472297.2_1_19:24014717-24015296:+|nuORF	MSMS	A375_MHC_IP_R2	2	526.9276123046875	3	526.976911	1577.9089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.572	1	88.304	87.804	88.804	0.7318								0	0	0	0.1635	1	33307	33307		0.50596	0.051438	1				63300	12371	46215	46574	61647	61647					0.1430662532993665
YKRRWWKKLLV	11	Unmodified	_YKRRWWKKLLV_					0	0	0			REV__ENST00000433473.7_1_1:40558092-40558149:-|nuORF	REV__ENST00000433473.7_1_1:40558092-40558149:-|nuORF	MSMS	A375_MHC_IP_R1	1	788.8131713867188	2	788.485363	1574.95617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	147.48	1	147.48	146.98	147.98	0								0	0	0	0.1636	1	56356	56356		0	0	1		+		63301	24731	46216	46575	61648	61648					0.19169227872566807
YKRVTGTSF	9	Unmodified	_YKRVTGTSF_					0	0	0		nc|ENSG00000152782|Q8TE04-3|PANK1	nc|ENSG00000152782|Q8TE04-3|PANK1	nc|ENSG00000152782|Q8TE04-3|PANK1	MULTI-SECPEP	A375_MHC_IP_R1	1	353.6289978027344	3	353.525825	1057.55564	-0.14503	-5.1273E-05	0.61926	0.00021892	0.47423	0.00016765	353.52585974933817	27.473	0.35347	27.473	27.28	27.634	0					11	6	2	0	0	0	0.71071	1	8331	8331		14.405	11.124	1	1833200			63302	14687	46217	46576	61649	61649					0.029168588175252808
YKSDFTQKY	9	Unmodified	_YKSDFTQKY_					0	0	0		tr|U7STF7|U7STF7_FUSNUDUF1576domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01332PE=4SV=1	tr|U7STF7|U7STF7_FUSNUDUF1576domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01332PE=4SV=1	tr|U7STF7|U7STF7_FUSNUDUF1576domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01332PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	394.60845947265625	3	393.860873	1178.56079	-0.17678	-6.9626E-05	-3.7587	-0.0014804	-3.9354	-0.00155	393.85946760937566	24.149	0.25393	24.149	23.94	24.194	0					5	4	2	0	0	0	0.71341	1	6717	6717		12.873	3.3286	1	1726200			63303	29688	46218	46577	61650	61650					-0.02134882110522085
YKSILIVHQRT	11	Unmodified	_YKSILIVHQRT_					0	0	0		ENSG00000196597|ENST00000481138|ZNF782	ENSG00000196597|ENST00000481138|ZNF782	ENSG00000196597|ENST00000481138|ZNF782	MULTI-SECPEP	A375_MHC_IP_R1	1	679.80126953125	2	679.401161	1356.78777	-0.98547	-0.00066953	-0.62642	-0.00042559	-1.6119	-0.0010951	679.4005911427448	143.06	0.95776	143.06	142.54	143.49	0					58	18	5	0	0	0	0.99994	1	54764	54764		7.1017	4.1065	1	38259000			63304	9063	46219	46578	61651	61651					0.12364701168257852
YKSILSNVAT	10	Unmodified	_YKSILSNVAT_					0	0	0			REV__nc|ENSG00000014123|O94874-3|UFL1	REV__nc|ENSG00000014123|O94874-3|UFL1	MSMS	A375_MHC_IP_R2	2	365.9267578125	3	365.873001	1094.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.528	1	25.172	24.672	25.672	0.64368								0	0	0	0.14905	1	8070	8070		19.626	3.0601	1		+		63305	16239	46220	46579	61652	61652					0.05365994786188821
YKTAEHHF	8	Unmodified	_YKTAEHHF_					0	0	0		nc|ENSG00000197893|Q86VF7-4|NRAP;nc|ENSG00000197893|Q86VF7-3|NRAP;ENSG00000197893|ENST00000359988|NRAP;nc|ENSG00000197893|Q86VF7-2|NRAP	nc|ENSG00000197893|Q86VF7-4|NRAP	nc|ENSG00000197893|Q86VF7-4|NRAP	MSMS	A375_MHC_IP_R2	2	516.676513671875	2	516.748516	1031.48248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.165	1	69.9	69.4	70.4	0.73511								0	0	0	0.16876	1	26210	26210		5.2307	0.90143	1				63306	9207	46221	46580	61653	61653					-0.032002699051190575
YKTDVSVTEK	10	Unmodified	_YKTDVSVTEK_					0	0	0		ENST00000340855.10_2_X:148561276-148561471:-|nuORF	ENST00000340855.10_2_X:148561276-148561471:-|nuORF	ENST00000340855.10_2_X:148561276-148561471:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	390.9464416503906	3	390.539799	1168.59757	-0.51927	-0.0002028	0.88188	0.00034441	0.3626	0.00014161	390.54011609929125	22.801	0.45885	23.431	23.062	23.521	0.63015					11	8	2	0	0	0	0.93407	1	7180	7180		10.315	0.55098	1	1265400			63307	10862	46222	46581	61654	61654					0.020013697153899557
YKTWYRSS	8	Unmodified	_YKTWYRSS_					0	0	0		ENST00000481568.2_1_10:73520406-73521697:-|nuORF;ENSG00000107738|ENST00000394957|VSIR	ENST00000481568.2_1_10:73520406-73521697:-|nuORF	ENST00000481568.2_1_10:73520406-73521697:-|nuORF	MSMS	A375_MHC_IP_R1	1	545.7161254882812	2	545.769448	1089.52434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.6	1	127.6	127.1	128.1	0								0	0	0	0.16876	1	48933	48933		7.9102	0	1				63308	2754	46223	46582	61655	61655					-0.01683714216574117
YKVDENQKY	9	Unmodified	_YKVDENQKY_					0	0	0		tr|U7SUT2|U7SUT2_FUSNULong-chainfattyacidtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00997PE=3SV=1	tr|U7SUT2|U7SUT2_FUSNULong-chainfattyacidtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00997PE=3SV=1	tr|U7SUT2|U7SUT2_FUSNULong-chainfattyacidtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00997PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	594.1903076171875	2	593.790578	1185.5666	-0.72774	-0.00043213	0.090488	5.3731E-05	-0.63725	-0.00037839	593.7907310669709	41.419	0.3535	42.193	41.997	42.35	0.77451					10	6	2	0	0	0	0.48845	1	15396	15396		47.749	30.636	1	2015600			63309	29775	46224	46583	61656	61656					-0.018757835988708393
YKVDENQKY	9	Unmodified	_YKVDENQKY_					0	0	0		tr|U7SUT2|U7SUT2_FUSNULong-chainfattyacidtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00997PE=3SV=1	tr|U7SUT2|U7SUT2_FUSNULong-chainfattyacidtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00997PE=3SV=1	tr|U7SUT2|U7SUT2_FUSNULong-chainfattyacidtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00997PE=3SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		2	593.790578	1185.5666	-0.34136	-0.0002027	0.43264	0.0002569	0.091274	5.4198E-05	593.7907605956176	42.078	0.30267	42.078	41.982	42.285	0	-0.057809	0.00032637	NaN	47.749	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1253300			63310	29775	46224	46583							-0.018757835988708393
YKYDSKTDRWD	11	Unmodified	_YKYDSKTDRWD_					0	0	0		OCRL|p.S678Kfs*48|1|0.89|ENSG00000122126|chrX:129576467-129576468|-/A|frameshift_variant;nc|ENSG00000122126|Q01968-2|OCRL;ENSG00000122126|ENST00000371113|OCRL	OCRL|p.S678Kfs*48|1|0.89|ENSG00000122126|chrX:129576467-129576468|-/A|frameshift_variant	OCRL|p.S678Kfs*48|1|0.89|ENSG00000122126|chrX:129576467-129576468|-/A|frameshift_variant	MSMS	A375_MHC_IP_R2	2	738.757568359375	2	738.84133	1475.66811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.3	1	116.96	116.46	117.46	0.65962								0	0	0	0.16213	1	43902	43902		7.609	2.7119	1				63311	3762	46225	46584	61657	61657					-0.05069956966963218
YKYIDDRI	8	Unmodified	_YKYIDDRI_					0	0	0			REV__tr|U7SLT5|U7SLT5_FUSNUCRISPR-associatedproteincas5,subtypeI-b/hmariOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02171PE=4SV=1	REV__tr|U7SLT5|U7SLT5_FUSNUCRISPR-associatedproteincas5,subtypeI-b/hmariOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02171PE=4SV=1	MSMS	A375_MHC_IP_R2	2	362.4675598144531	3	362.525713	1084.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.697	1	53.448	52.948	53.948	0.75138								0	0	0	0.16876	1	19868	19868		3.5965	1.098	1		+		63312	28278	46226	46585	61658	61658					0.0164143909764789
YKYLRRLFRFR	11	Unmodified	_YKYLRRLFRFR_					0	0	0		ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	MULTI-MSMS	A375_MHC_IP_R2	2	809.62060546875	2	809.478069	1616.94158	-0.68497	-0.00055447	-2.6887	-0.0021765	-3.3737	-0.0027309	809.4755995378247	138.26	0.20319	138.34	138.27	138.47	0.083969					5	3	2	0	0	0	0.73934	1	54213	54213		0	0	1	459470			63313	3309	46227	46586	61659	61659					0.15779155724408156
YKYWFSQP	8	Unmodified	_YKYWFSQP_					0	0	0		nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000504717.1_1_22:50941822-50943237:-|nuORF	nc|ENSG00000100258|Q9BU23-3|LMF2	nc|ENSG00000100258|Q9BU23-3|LMF2	MULTI-SECPEP	A375_MHC_IP_R1	1	373.6012268066406	3	373.515037	1117.52328	0.17657	6.5952E-05	4.0998	0.0015314	4.2764	0.0015973	373.8503763494942	28.133	0.30163	28.133	27.987	28.288	0					8	5	2	0	0	0	0.97021	1	8704	8704		12.241	6.9438	1	1273000			63314	2147	46228	46587	61660	61660					-0.030779285854805494
YKYYKKQMPSL	11	Unmodified	_YKYYKKQMPSL_					0	0	0			REV__nc|ENSG00000170004|Q12873-3|CHD3;REV__ENSG00000111642|ENST00000544040|CHD4	REV__ENSG00000111642|ENST00000544040|CHD4	MSMS	A375_MHC_IP_R2	2	483.4919738769531	3	483.591729	1447.75336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.54	1	72.274	71.774	72.774	0.73421								0	0	0	0.16275	1	27140	27140		4.4062	0.56024	1		+		63315	17680;27349	46229	46588	61661	61661					0.047391169651518794
YLAARALQV	9	Unmodified	_YLAARALQV_					0	0	0		ENST00000471247.5_1_3:156868037-156868247:-|nuORF	ENST00000471247.5_1_3:156868037-156868247:-|nuORF	ENST00000471247.5_1_3:156868037-156868247:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1005.07177734375	1	1004.58874	1003.58147	0.00013547	1.361E-07	-4.4181	-0.0044384	-4.418	-0.0044383	1005.5869613248802	122.01	0.65873	122.46	121.98	122.64	0.44488					17	12	2	0	0	0	0.55359	1	46685	46685		21.747	2.3076	1	33327000			63316	12351	46230	46589	61662	61662					0.07981753059800667
YLACGQSPTPE	11	Unmodified	_YLACGQSPTPE_					0	0	0			REV__ENST00000418724.1_1_6:33282259-33282403:-|nuORF	REV__ENST00000418724.1_1_6:33282259-33282403:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	583.663818359375	2	583.263339	1164.51212	-0.28262	-0.00016484	0.74779	0.00043616	0.46517	0.00027132	583.2637269145224	84.958	0.46114	85.694	85.472	85.933	0.73602					11	8	2	0	0	0	0.73016	1	32309	32309		8.7454	8.7454	1	2063200	+		63317	24561	46231	46590	61663	61663					-0.06355118741907972
YLADIFTKL	9	Unmodified	_YLADIFTKL_					0	0	0		ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	MULTI-MSMS	A375_MHC_IP_R1	1	542.707275390625	2	542.307875	1082.6012	-0.38593	-0.00020929	-0.65428	-0.00035482	-1.0402	-0.00056411	542.3074870589679	117.27	0.70732	117.27	117.06	117.76	0					28	13	3	0	0	0	0.0098956	1	43033	43033		140.63	72.795	1	34148000			63318	9749	46232	46591	61664	61664					0.06320084279900584
YLADIFTKL	9	Unmodified	_YLADIFTKL_					0	0	0		ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	MULTI-MSMS	A375_MHC_IP_R2	2	542.7067260742188	2	542.307875	1082.6012	-0.66675	-0.00036159	-0.28421	-0.00015413	-0.95097	-0.00051572	542.3077184252147	116.43	0.56187	117.09	116.77	117.33	0.65961					24	10	3	0	0	0	0.0013431	1	43925	43925		179.17	92.842	1	29957000			63319	9749	46232	46591	61665	61665					0.06320084279900584
YLADLYHFV	9	Unmodified	_YLADLYHFV_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	A375_MHC_IP_R1	1	571.1900634765625	2	570.78985	1139.56515	-0.021129	-1.206E-05	-0.47599	-0.00027169	-0.49712	-0.00028375	571.2907915823782	112.05	0.66219	112.05	111.82	112.48	0					17	12	2	0	0	0	0.083809	1	41089	41089		53.576	23.351	1	1949800			63320	2114	46233	46592	61666	61666					0.0009462710302159394
YLADLYHFV	9	Unmodified	_YLADLYHFV_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-SECPEP	A375_MHC_IP_R2	2	570.1607666015625	2	570.78985	1139.56515	-0.12047	-6.8762E-05	-1.0102	-0.00057663	-1.1307	-0.00064539	570.7898231940381	111.3	0.51334	112.03	111.65	112.16	0.73692					14	9	2	0	0	0	0.40041	1	41923	41923		38.151	5.8457	1	2111900			63321	2114	46233	46592	61667	61667					0.0009462710302159394
YLADVTNAL	9	Unmodified	_YLADVTNAL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	A375_MHC_IP_R1	1	979.9091796875	1	979.509488	978.502212	-0.080523	-7.8873E-05	-0.4341	-0.00042521	-0.51462	-0.00050408	979.5089802206389	90.943	0.60798	90.943	90.641	91.249	0					19	11	2	0	0	0	0.00072925	1	33385	33385		198.25	74.8	1	7818200			63322	4093	46234	46593	61668	61668					0.012100613149868877
YLADVTNAL	9	Unmodified	_YLADVTNAL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	A375_MHC_IP_R2	2	979.9111938476562	1	979.509488	978.502212	0.09075	8.889E-05	-0.1247	-0.00012214	-0.033948	-3.3252E-05	979.5092555561511	90.196	0.55956	90.928	90.699	91.258	0.7318					17	10	2	0	0	0	0.010732	1	34285	34285		183.04	71.752	1	7009000			63323	4093	46234	46593	61669	61669					0.012100613149868877
YLADVTNAL	9	Unmodified	_YLADVTNAL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	A375_MHC_IP_R2	2	490.6763000488281	2	490.258382	978.502212	-0.44578	-0.00021855	-0.66782	-0.00032741	-1.1136	-0.00054595	490.25790755882275	90.219	0.40726	90.951	90.699	91.106	0.7318					16	7	3	0	0	0	0.27715	1	34366	34366		32.305	1.6689	1	811000			63324	4093	46234	46593	61670	61670					0.012100613149868877
YLAEADSSNEL	11	Unmodified	_YLAEADSSNEL_					0	0	0			REV__ACRV1|p.P49S|1|0.39|ENSG00000134940|chr11:125678205-125678205|G/A|missense_variant	REV__ACRV1|p.P49S|1|0.39|ENSG00000134940|chr11:125678205-125678205|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	606.2447509765625	2	606.274958	1210.53536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.009	1	77.752	77.252	78.252	0.74293								0	0	0	0.15377	1	29240	29240		18.146	3.3081	1		+		63325	15298	46235	46594	61671	61671					-0.061484014236157236
YLAHFIEGL	9	Unmodified	_YLAHFIEGL_					0	0	0		ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MSMS	A375_MHC_IP_R1	1	532.1844482421875	2	531.784567	1061.55458	-0.557	-0.0002962	-0.22084	-0.00011744	-0.77784	-0.00041364	531.7850073717331	97.9	0.609	97.9	97.691	98.3	0					22	11	3	0	0	0	0.051888	1	35985	35985		63.563	23.606	1	2375100			63326	4468	46236	46595	61672	61672					0.026266444486282126
YLAHFIEGL	9	Unmodified	_YLAHFIEGL_					0	0	0		ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-SECPEP	A375_MHC_IP_R2	2	532.1842651367188	2	531.784567	1061.55458	-0.86662	-0.00046086	0.34503	0.00018348	-0.52159	-0.00027737	531.7847180779739	97.039	0.50505	97.795	97.469	97.974	0.75586					21	9	3	0	0	0	0.3243	1	36833	36833		44.407	13.77	1	2207400			63327	4468	46236	46595	61673	61673					0.026266444486282126
YLAKQVPEL	9	Unmodified	_YLAKQVPEL_					0	0	0			REV__ENSG00000204611|ENST00000600228|ZNF616	REV__ENSG00000204611|ENST00000600228|ZNF616	MSMS	A375_MHC_IP_R1	1	530.6961059570312	2	530.8055	1059.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.667	1	74.667	74.167	75.167	0								0	0	0	0.14677	1	27198	27198		26.884	0	1		+		63328	22529	46237	46596	61674	61674					0.0690320013713972
YLAKRISRI	9	Unmodified	_YLAKRISRI_					0	0	0		ENST00000287912.7_1_7:155437535-155471332:+|nuORF	ENST00000287912.7_1_7:155437535-155471332:+|nuORF	ENST00000287912.7_1_7:155437535-155471332:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	373.9147644042969	3	373.904747	1118.69241	0.22365	8.3623E-05	-0.78615	-0.00029394	-0.5625	-0.00021032	374.2386881736806	39.163	0.66193	39.937	39.658	40.32	0.77451					19	12	2	0	0	0	0.76628	1	14356	14356		1.0715	0	1	4093700			63329	10458	46238	46597	61675	61675					0.13781392767873513
YLALSNVKSP	10	Unmodified	_YLALSNVKSP_					0	0	0		HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|430|3|anti-sense	HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|430|3|anti-sense	HERVK-int_dup102|chr7:4583489-4590929:-|2.147788603746504|0.4463608682754711|2.27|465.0|430|3|anti-sense	MULTI-MSMS	A375_MHC_IP_R2	2	547.705078125	2	546.308406	1090.60226	-0.90807	-0.00049609	0.13177	7.1987E-05	-0.7763	-0.0004241	546.308428643474	41.515	0.45673	42.29	42.047	42.504	0.77451					21	8	4	0	0	0	0.71455	1	15378	15378		10.074	10.074	1	9835000			63330	14116	46239	46598	61676	61676					0.060582986487816015
YLANDVIQNC	10	Unmodified	_YLANDVIQNC_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;RPRD2|p.K150Ffs*2|1|0.26|ENSG00000163125|chr1:150441891-150441892|-/TTTT|frameshift_variant;nc|ENSG00000163125|Q5VT52-4|RPRD2;nc|ENSG00000163125|Q5VT52-5|RPRD2;RPRD2|p.N1095Kfs*2|1|0.27|ENSG00000163125|chr1:150472230-150472231|-/A|frameshift_variant	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MSMS	A375_MHC_IP_R2	2	576.6904907226562	2	576.771331	1151.52811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.961	1	82.704	82.204	83.204	0.74293								0	0	0	0.1524	1	31134	31134		13.042	2.2185	1				63331	6633	46240	46599	61677	61677					-0.04159412505009641
YLAPHVRTL	9	Unmodified	_YLAPHVRTL_					0	0	0		ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-7|GPS1;nc|ENSG00000169727|Q13098-6|GPS1	ENSG00000169727|ENST00000578552|GPS1	ENSG00000169727|ENST00000578552|GPS1	MULTI-MSMS	A375_MHC_IP_R1	1	357.6116943359375	3	357.209948	1068.60801	0.101	3.608E-05	0.24263	8.667E-05	0.34364	0.00012275	357.2101378273661	40.759	0.70915	40.759	40.254	40.963	0					35	13	4	0	0	0	0.18338	1	13987	13987		39.213	11.99	1	22918000			63332	7432	46241	46600	61678	61678					0.07645441951149223
YLAPHVRTL	9	Unmodified	_YLAPHVRTL_					0	0	0		ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-7|GPS1;nc|ENSG00000169727|Q13098-6|GPS1	ENSG00000169727|ENST00000578552|GPS1	ENSG00000169727|ENST00000578552|GPS1	MULTI-MSMS	A375_MHC_IP_R1	1	535.7109985351562	2	535.311284	1068.60801	-0.64403	-0.00034476	-0.15862	-8.4912E-05	-0.80265	-0.00042967	535.311137154385	40.763	0.35387	40.763	40.559	40.913	0					15	6	3	0	0	0	0.18338	1	14028	14028		49.554	9.597	1	5232300			63333	7432	46241	46600	61679	61679					0.07645441951149223
YLAPHVRTL	9	Unmodified	_YLAPHVRTL_					0	0	0		ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-7|GPS1;nc|ENSG00000169727|Q13098-6|GPS1	ENSG00000169727|ENST00000578552|GPS1	ENSG00000169727|ENST00000578552|GPS1	MULTI-SECPEP	A375_MHC_IP_R2	2	357.60992431640625	3	357.209948	1068.60801	-0.25273	-9.0278E-05	0.52781	0.00018854	0.27508	9.826E-05	357.210158550036	39.825	0.86349	40.6	40.269	41.133	0.77451					39	16	5	0	0	0	0.087712	1	14704	14704		39.213	11.99	1	23926000			63334	7432	46241	46600	61680	61680					0.07645441951149223
YLAPHVRTL	9	Unmodified	_YLAPHVRTL_					0	0	0		ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-7|GPS1;nc|ENSG00000169727|Q13098-6|GPS1	ENSG00000169727|ENST00000578552|GPS1	ENSG00000169727|ENST00000578552|GPS1	MULTI-SECPEP	A375_MHC_IP_R2	2	535.7110595703125	2	535.311284	1068.60801	-0.86598	-0.00046357	0.18021	9.6467E-05	-0.68577	-0.0003671	535.3113635445502	39.83	0.30476	40.604	40.422	40.727	0.77451					12	5	3	0	0	0	0.30925	1	14742	14742		49.554	15.452	1	5453800			63335	7432	46241	46600	61681	61681					0.07645441951149223
YLAPSNQSV	9	Unmodified	_YLAPSNQSV_					0	0	0		ENST00000477418.2_1_1:27206170-27212721:-|nuORF;ENSG00000142751|ENST00000374135|GPN2	ENST00000477418.2_1_1:27206170-27212721:-|nuORF	ENST00000477418.2_1_1:27206170-27212721:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	489.9443359375	2	489.748182	977.481811	-0.078347	-3.837E-05	-0.65575	-0.00032115	-0.7341	-0.00035952	489.7478576487669	43.193	0.45929	43.193	42.841	43.3	0					14	8	2	0	0	0	0.49205	1	14934	14934		27.629	10.516	1	1169200			63336	12441	46242	46601	61682	61682					-0.007831093448089632
YLASLIRSV	9	Unmodified	_YLASLIRSV_					0	0	0		ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	MULTI-SECPEP	A375_MHC_IP_R1	1	511.7054443359375	2	511.305667	1020.59678	-0.31802	-0.00016261	-0.37947	-0.00019403	-0.69749	-0.00035663	511.30552427329076	82.576	0.75948	82.576	82.265	83.024	0					24	14	3	0	0	0	0.46121	1	30209	30209		32.037	5.1538	1	3518800			63337	2412	46243	46602	61683	61683					0.08730619856999056
YLCDMMSQV	9	Unmodified	_YLCDMMSQV_					0	0	0			REV__ENSG00000119616|ENST00000341162|FCF1	REV__ENSG00000119616|ENST00000341162|FCF1	MSMS	A375_MHC_IP_R2	2	545.1900024414062	2	545.224313	1088.43407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.283	1	83.026	82.526	83.526	0.74293								0	0	0	0.15486	1	31255	31255		8.5933	0.68312	1		+		63338	18079	46244	46603	61684	61684					-0.10660590923157542
YLCSNLHLS	9	Unmodified	_YLCSNLHLS_					0	0	0			REV__nc|ENSG00000070729|Q14028-2|CNGB1	REV__nc|ENSG00000070729|Q14028-2|CNGB1	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6950073242188	2	525.257859	1048.50117	-0.56589	-0.00029724	0.64525	0.00033892	0.07936	4.1684E-05	525.258138978749	65.066	0.40544	65.066	64.851	65.257	0					10	7	2	0	0	0	0.71541	1	23597	23597		16.942	3.4344	1	794670	+		63339	16578	46245	46604	61685	61685					-0.021144763255506405
YLCTTDLLL	9	Carbamidomethyl (C)	_YLC(Carbamidomethyl (C))TTDLLL_	YLC(1)TTDLLL		YLC(47)TTDLLL		0	1	0		ENST00000373606.7_1_20:35945124-35945295:+|nuORF	ENST00000373606.7_1_20:35945124-35945295:+|nuORF	ENST00000373606.7_1_20:35945124-35945295:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	556.2364501953125	2	556.288825	1110.5631	-0.61671	-0.00034307	-0.043892	-2.4417E-05	-0.6606	-0.00036749	556.2887664452891	85.85	2.8446	86.585	85.779	88.624	0.73499					86	55	3	0	0	0	0.1209	1	32724	32724		46.921	6.9635	1	4382600			63340	11235	46246	46605	61686	61686	55				0.01223830302933493
YLDASLITV	9	Unmodified	_YLDASLITV_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-SECPEP	A375_MHC_IP_R1	1	995.061767578125	1	994.545539	993.538263	0.4064	0.00040418	-0.11756	-0.00011691	0.28884	0.00028726	994.545421293658	117.47	0.50632	117.47	117.26	117.76	0					13	9	2	0	0	0	0.07754	1	43231	43231		64.236	9.4628	1	11191000			63341	1441	46247	46606	61687	61687					0.04123518491849154
YLDASLITV	9	Unmodified	_YLDASLITV_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-SECPEP	A375_MHC_IP_R2	2	994.3084716796875	1	994.545539	993.538263	0.15935	0.00015848	-0.5095	-0.00050672	-0.35015	-0.00034824	994.5448453298496	116.66	0.45657	117.32	117.12	117.58	0.65962					13	8	2	0	0	0	0.07754	1	44041	44041		74.423	19.649	1	19321000			63342	1441	46247	46606	61688	61688					0.04123518491849154
YLDDGHSFQY	10	Unmodified	_YLDDGHSFQY_					0	0	0		ENSG00000214013|ENST00000318010|GANC	ENSG00000214013|ENST00000318010|GANC	ENSG00000214013|ENST00000318010|GANC	MULTI-MSMS	A375_MHC_IP_R2	2	623.1630859375	2	622.76456	1243.51457	-1.0709	-0.0006669	-0.39056	-0.00024322	-1.4614	-0.00091013	622.7641719246471	58.492	0.45999	59.241	58.98	59.44	0.74894					13	8	2	0	0	0	0.27133	1	22164	22164		41.956	9.1699	1	1969700			63343	9597	46248	46607	61689	61689					-0.09744947012609373
YLDDIGLLQA	10	Unmodified	_YLDDIGLLQA_					0	0	0		ENSG00000134588|ENST00000511190|USP26;USP26|p.P247S|1|0.18|ENSG00000134588|chrX:133027482-133027482|G/A|missense_variant	ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	MULTI-SECPEP	A375_MHC_IP_R2	2	561.20263671875	2	560.797872	1119.58119	-0.60212	-0.00033767	4.0533	0.0022731	3.4512	0.0019354	560.8000609249627	67.699	1.7772	68.435	67.698	69.476	0.73631					54	34	2	0	0	0	0.42334	1	25634	25634		51.63	9.7902	1	15149000			63344	4589	46249	46608	61690	61690					0.026182885492971764
YLDDPDLKY	9	Unmodified	_YLDDPDLKY_					0	0	0		ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	ENSG00000130816|ENST00000359526|DNMT1	ENSG00000130816|ENST00000359526|DNMT1	MULTI-MSMS	A375_MHC_IP_R1	1	571.1704711914062	2	571.274229	1140.53391	-0.27537	-0.00015731	-0.2137	-0.00012208	-0.48907	-0.00027939	571.2740082805259	61.661	1.7375	61.661	60.922	62.66	0					118	33	5	0	0	0	0.0083527	1	22245	22245		128.93	82.911	1	385170000			63345	4284	46250	46609	61691	61691					-0.030739907217139262
YLDDPDLKY	9	Unmodified	_YLDDPDLKY_					0	0	0		ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	ENSG00000130816|ENST00000359526|DNMT1	ENSG00000130816|ENST00000359526|DNMT1	MULTI-SECPEP	A375_MHC_IP_R2	2	570.7293090820312	2	571.274229	1140.53391	-0.59338	-0.00033898	-0.15587	-8.9044E-05	-0.74924	-0.00042802	571.2740181555041	61.047	1.3622	61.792	61.414	62.776	0.74503					95	26	5	0	0	0	0.011408	1	23177	23177		128.93	90.958	1	267310000			63346	4284	46250	46609	61692	61692					-0.030739907217139262
YLDDPDVVGY	10	Unmodified	_YLDDPDVVGY_					0	0	0			REV__ENSG00000132692|ENST00000329117|BCAN	REV__ENSG00000132692|ENST00000329117|BCAN	MULTI-MSMS	A375_MHC_IP_R1	1	578.6636352539062	2	578.263862	1154.51317	-0.1727	-9.9864E-05	-0.4924	-0.00028474	-0.6651	-0.0003846	578.2637026726612	61.699	0.81704	61.699	61.432	62.249	0					36	15	3	0	0	0	0.10503	1	22236	22236		62.573	43.316	1	7460200	+		63347	18671	46251	46610	61693	61693					-0.05790581101382486
YLDDPDVVGY	10	Unmodified	_YLDDPDVVGY_					0	0	0			REV__ENSG00000132692|ENST00000329117|BCAN	REV__ENSG00000132692|ENST00000329117|BCAN	MULTI-SECPEP	A375_MHC_IP_R1	1	577.6716918945312	2	578.263862	1154.51317	-0.1727	-9.9864E-05	-0.4924	-0.00028474	-0.6651	-0.0003846	578.2637026726612	61.699	0.81704	61.699	61.432	62.249	0					36	15	3	0	0	0	0.47386	1	22214	22214		47.749	23.728	1	7460200	+		63348	18671	46251	46610	61694	61694					-0.05790581101382486
YLDDPDVVGY	10	Unmodified	_YLDDPDVVGY_					0	0	0			REV__ENSG00000132692|ENST00000329117|BCAN	REV__ENSG00000132692|ENST00000329117|BCAN	MULTI-MSMS	A375_MHC_IP_R2	2	578.6630249023438	2	578.263862	1154.51317	-0.52106	-0.00030131	-0.48949	-0.00028305	-1.0105	-0.00058436	578.2636596360155	61.086	1.0078	61.831	61.515	62.523	0.74503					41	19	3	0	0	0	0.10503	1	23121	23121		62.573	39.836	1	6973400	+		63349	18671	46251	46610	61695	61695					-0.05790581101382486
YLDDPDVVGY	10	Unmodified	_YLDDPDVVGY_					0	0	0			REV__ENSG00000132692|ENST00000329117|BCAN	REV__ENSG00000132692|ENST00000329117|BCAN	MULTI-SECPEP	A375_MHC_IP_R2	2	577.671630859375	2	578.263862	1154.51317	-0.52106	-0.00030131	-0.48949	-0.00028305	-1.0105	-0.00058436	578.2636596360155	61.086	1.0078	61.831	61.515	62.523	0.74503					41	19	3	0	0	0	0.72086	1	23083	23083		30.637	15.798	1	6973400	+		63350	18671	46251	46610	61696	61696					-0.05790581101382486
YLDDSDGCGAP	11	Unmodified	_YLDDSDGCGAP_					0	0	0		ENST00000469761.1_1_6:28185900-28186131:-|nuORF	ENST00000469761.1_1_6:28185900-28186131:-|nuORF	ENST00000469761.1_1_6:28185900-28186131:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	557.2205810546875	2	556.713679	1111.4128	-0.51898	-0.00028892	0.044252	2.4636E-05	-0.47473	-0.00026429	556.7136992197968	52.275	3.3483	52.275	51.168	54.516	0					126	65	3	0	0	0	0.72949	1	18685	18685		9.3831	0	1	3620800			63351	12327	46252	46611	61697	61697					-0.13844561426685686
YLDEDTIYHL	10	Unmodified	_YLDEDTIYHL_					0	0	0		nc|ENSG00000168906|P31153-2|MAT2A;ENSG00000168906|ENST00000306434|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	MULTI-SECPEP	A375_MHC_IP_R1	1	641.718505859375	2	641.303518	1280.59248	-0.45246	-0.00029017	-0.25538	-0.00016377	-0.70784	-0.00045394	641.304187076245	88.861	0.55879	88.861	88.561	89.12	0					16	10	2	0	0	0	0.78945	1	32697	32697		19.257	3.1079	1	1420600			63352	7356	46253	46612	61698	61698					-0.03658934147210857
YLDEGRLRY	9	Unmodified	_YLDEGRLRY_					0	0	0		ENSG00000087095|ENST00000407008|NLK	ENSG00000087095|ENST00000407008|NLK	ENSG00000087095|ENST00000407008|NLK	MULTI-MSMS	A375_MHC_IP_R1	1	395.27532958984375	3	395.540134	1183.59857	0.088335	3.494E-05	0.19237	7.6091E-05	0.28071	0.00011103	395.5401737386656	40.579	1.0133	40.579	40.05	41.063	0					41	19	5	0	0	0	0.04699	4	13924	13924;13930;13937;14053		65.474	26.859	1	33048000			63353	1857	46254	46613	61699;61700;61701;61702	61699					0.01411628874939197
YLDEGRLRY	9	Unmodified	_YLDEGRLRY_					0	0	0		ENSG00000087095|ENST00000407008|NLK	ENSG00000087095|ENST00000407008|NLK	ENSG00000087095|ENST00000407008|NLK	MULTI-MSMS	A375_MHC_IP_R2	2	395.9402160644531	3	395.540134	1183.59857	-0.17814	-7.046E-05	0.13003	5.1432E-05	-0.048105	-1.9028E-05	395.54016852274424	39.876	0.76189	40.651	40.371	41.133	0.77451					34	14	4	0	0	0	0.014789	1	14726	14726		90.135	46.153	1	27952000			63354	1857	46254	46613	61703	61703					0.01411628874939197
YLDEGRLRY	9	Unmodified	_YLDEGRLRY_					0	0	0		ENSG00000087095|ENST00000407008|NLK	ENSG00000087095|ENST00000407008|NLK	ENSG00000087095|ENST00000407008|NLK	MULTI-SECPEP	A375_MHC_IP_R2	2	593.2061767578125	2	592.806562	1183.59857	-0.60861	-0.00036079	0.46046	0.00027296	-0.14815	-8.7825E-05	592.8065824225937	39.858	0.50859	40.632	40.32	40.828	0.77451					19	9	3	0	0	0	0.72623	1	14756	14756		25.399	4.9457	1	5942800			63355	1857	46254	46613	61704	61704					0.01411628874939197
YLDEIVKEV	9	Unmodified	_YLDEIVKEV_					0	0	0		ENSG00000047410|ENST00000367478|TPR;nc|ENSG00000047410|P12270-2|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-SECPEP	A375_MHC_IP_R2	2	554.6990966796875	2	554.300247	1106.58594	-0.7342	-0.00040696	-0.98096	-0.00054374	-1.7152	-0.00095071	554.2996111534394	79.888	0.96603	80.632	80.299	81.265	0.74474					34	18	3	0	0	0	0.044425	1	30311	30311		87.258	21.785	1	7137800			63356	1199	46255	46614	61705	61705					0.036911726920379806
YLDEQFDMV	9	Unmodified	_YLDEQFDMV_					0	0	0			REV__ENSG00000181754|ENST00000369864|AMIGO1	REV__ENSG00000181754|ENST00000369864|AMIGO1	MSMS	A375_MHC_IP_R1	1	580.1911010742188	2	580.25244	1158.49033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.912	1	64.912	64.412	65.412	0								0	0	0	0.15486	1	23495	23495		8.5933	0	1		+		63357	21664	46256	46615	61706	61706					-0.08257923490509711
YLDEQRAVKY	10	Unmodified	_YLDEQRAVKY_					0	0	0		ENSG00000081791|ENST00000432126|DELE1	ENSG00000081791|ENST00000432126|DELE1	ENSG00000081791|ENST00000432126|DELE1	MULTI-MSMS	A375_MHC_IP_R2	2	429.29071044921875	3	428.890944	1283.651	-0.29838	-0.00012797	0.31609	0.00013557	0.017717	7.5988E-06	428.8910684510826	30.663	1.4657	31.382	30.355	31.821	0.71857					47	28	3	0	0	0	0.70565	1	10824	10824		9.7643	2.2872	1	4676600			63358	1743	46257	46616	61707	61707					0.020521672179029338
YLDESKQLY	9	Unmodified	_YLDESKQLY_					0	0	0		ENST00000477045.1_1_1:2518532-2519982:+|nuORF;nc|ENSG00000157870|Q8TBF2-4|PRXL2B;ENST00000484099.5_1_1:2518532-2520863:+|nuORF;nc|ENSG00000157870|Q8TBF2-2|PRXL2B;nc|ENSG00000157870|Q8TBF2-6|PRXL2B;ENSG00000157870|ENST00000419916|PRXL2B;nc|ENSG00000157870|Q8TBF2-7|PRXL2B;ENST00000493183.5_1_1:2517940-2520863:+|nuORF;ENST00000481683.5_1_1:2518487-2520915:+|nuORF;nc|ENSG00000157870|Q8TBF2-3|PRXL2B	ENST00000477045.1_1_1:2518532-2519982:+|nuORF	ENST00000477045.1_1_1:2518532-2519982:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	580.1869506835938	2	579.787504	1157.56045	-0.17556	-0.00010179	-0.1207	-6.9978E-05	-0.29625	-0.00017176	579.7872810056027	48.089	0.60402	48.85	48.48	49.084	0.76128					27	11	3	0	0	0	0.01147	1	18006	18006		110.55	54.376	1	9074800			63359	6274	46258	46617	61708	61708					-0.012023018303580102
YLDEYIARM	9	Unmodified	_YLDEYIARM_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-SECPEP	A375_MHC_IP_R1	1	587.6839599609375	2	587.284074	1172.5536	-0.13525	-7.9431E-05	1.1284	0.00066266	0.9931	0.00058323	587.2837133852341	82.259	0.96477	82.259	81.758	82.722	0					40	18	3	0	0	0	0.11849	1	29986	29986		70.332	16.499	1	6517600			63360	2430	46259	46618	61709	61709					-0.025779379826190052
YLDEYIARM	9	Unmodified	_YLDEYIARM_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-SECPEP	A375_MHC_IP_R2	2	587.6842651367188	2	587.284074	1172.5536	-0.6553	-0.00038485	0.13097	7.6916E-05	-0.52433	-0.00030793	587.284149116937	81.391	0.65616	82.134	81.826	82.482	0.74293					28	12	3	0	0	0	0.05217	1	30879	30879		89.401	26.828	1	6719800			63361	2430	46259	46618	61710	61710					-0.025779379826190052
YLDEYIARM	9	Oxidation (M)	_YLDEYIARM(Oxidation (M))_		YLDEYIARM(1)		YLDEYIARM(100)	0	0	1		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	A375_MHC_IP_R2	2	595.6812744140625	2	595.281531	1188.54851	-0.73749	-0.00043902	0.84926	0.00050555	0.11177	6.6532E-05	595.7843342415598	54.702	0.81465	55.452	55.118	55.933	0.75075					38	15	3	0	0	0	0.0090297	1	20715	20715		99.755	34.52	1	7107900			63362	2430	46259	46619	61711	61711		108			-0.03822241845227836
YLDGDGCC	8	Unmodified	_YLDGDGCC_					0	0	0			REV__ENST00000244221.8_1_2:71454062-71454200:-|nuORF	REV__ENST00000244221.8_1_2:71454062-71454200:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	846.2969360351562	1	845.280416	844.27314	-0.49735	-0.0004204	-0.20906	-0.00017671	-0.70641	-0.00059711	845.2768623502191	114.44	0.30688	115.15	114.98	115.29	0.70985					8	5	2	0	0	0	0.77839	1	43190	43190		0.79363	0	1	2145000	+		63363	23103	46260	46620	61712	61712					-0.15522597244898861
YLDGVHTV	8	Unmodified	_YLDGVHTV_					0	0	0		ENSG00000131013|ENST00000253329|PPIL4	ENSG00000131013|ENST00000253329|PPIL4	ENSG00000131013|ENST00000253329|PPIL4	MULTI-MSMS	A375_MHC_IP_R2	2	452.63177490234375	2	452.232168	902.449782	-0.20185	-9.1281E-05	-0.35732	-0.00016159	-0.55916	-0.00025287	452.23199069934435	42.119	0.56207	42.891	42.605	43.167	0.7724					16	10	3	0	0	0	0.16801	1	15685	15685		74.396	33.948	1	3609700			63364	4299	46261	46621	61713	61713					-0.005344770279521072
YLDHAGATL	9	Unmodified	_YLDHAGATL_					0	0	0		ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	MULTI-MSMS	A375_MHC_IP_R1	1	481.1428527832031	2	480.742899	959.471246	-0.22817	-0.00010969	-1.5923	-0.00076547	-1.8204	-0.00087516	480.7429021415917	42.612	0.55624	42.612	42.285	42.841	0					15	10	2	0	0	0	0.11296	2	14808	14808;14824		48.346	19.859	1	2616500			63365	1616	46262	46622	61714;61715	61714					-0.010110919992371237
YLDHAGATL	9	Unmodified	_YLDHAGATL_					0	0	0		ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	MULTI-MSMS	A375_MHC_IP_R2	2	480.6916809082031	2	480.742899	959.471246	-0.5561	-0.00026734	-2.1059	-0.0010124	-2.662	-0.0012797	480.74279975533494	41.842	0.76581	42.616	42.198	42.964	0.77451					17	14	2	0	0	0	0.05754	1	15565	15565		61.357	29.052	1	2290500			63366	1616	46262	46622	61716	61716					-0.010110919992371237
YLDHNNFW	8	Unmodified	_YLDHNNFW_					0	0	0		nc|ENSG00000069535|P27338-2|MAOB;ENSG00000069535|ENST00000378069|MAOB	nc|ENSG00000069535|P27338-2|MAOB	nc|ENSG00000069535|P27338-2|MAOB	MULTI-MSMS	A375_MHC_IP_R2	2	555.1446533203125	2	554.745973	1107.47739	-0.82037	-0.0004551	-0.15126	-8.3909E-05	-0.97163	-0.00053901	554.7459795878427	82.09	0.56013	82.832	82.584	83.144	0.74293					29	10	4	0	0	0	0.69583	1	31156	31156		36.044	1.9418	1	5323500			63367	1478	46263	46623	61717	61717					-0.0720457376773993
YLDILILIIF	10	Unmodified	_YLDILILIIF_					0	0	0		tr|U7STH3|U7STH3_FUSNUMembraneproteinrequiredforcolicinVproductionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01408PE=4SV=1	tr|U7STH3|U7STH3_FUSNUMembraneproteinrequiredforcolicinVproductionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01408PE=4SV=1	tr|U7STH3|U7STH3_FUSNUMembraneproteinrequiredforcolicinVproductionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01408PE=4SV=1	MSMS	A375_MHC_IP_R1	1	618.7857055664062	2	618.386125	1234.7577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.67	1	144.67	144.17	145.17	0								0	0	0	0.15591	1	55473	55473		1.6526	0.17072	1				63368	29692	46264	46624	61718	61718					0.14970949450389526
YLDIPNPRY	9	Unmodified	_YLDIPNPRY_					0	0	0		nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF;nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT	nc|ENSG00000122966|O14578-3|CIT	nc|ENSG00000122966|O14578-3|CIT	MULTI-MSMS	A375_MHC_IP_R1	1	575.6985473632812	2	575.798206	1149.58186	0.039664	2.2839E-05	0.026184	1.5077E-05	0.065849	3.7916E-05	575.7981584708142	70.162	0.9158	70.162	69.782	70.698	0					55	17	4	0	0	0	0.070818	1	25389	25389		56.177	33.441	1	26292000			63369	3818	46265	46625	61719	61719					0.013051279890078149
YLDIPNPRY	9	Unmodified	_YLDIPNPRY_					0	0	0		nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF;nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT	nc|ENSG00000122966|O14578-3|CIT	nc|ENSG00000122966|O14578-3|CIT	MULTI-SECPEP	A375_MHC_IP_R2	2	576.1979370117188	2	575.798206	1149.58186	-0.097839	-5.6336E-05	-0.44511	-0.0002563	-0.54295	-0.00031263	575.7979237782022	69.583	1.0147	70.318	69.829	70.844	0.73421					51	19	4	0	0	0	0.13064	1	26282	26282		65.235	36.153	1	26722000			63370	3818	46265	46625	61720	61720					0.013051279890078149
YLDKDLKQY	9	Unmodified	_YLDKDLKQY_					0	0	0		nc|ENSG00000059758|Q00537-2|CDK17;ENSG00000059758|ENST00000261211|CDK17;ENST00000428400.5_1_X:47082893-47085639:+|nuORF;ENSG00000102225|ENST00000357227|CDK16;nc|ENSG00000102225|Q00536-3|CDK16;nc|ENSG00000102225|Q00536-2|CDK16	nc|ENSG00000059758|Q00537-2|CDK17	nc|ENSG00000059758|Q00537-2|CDK17	MULTI-SECPEP	A375_MHC_IP_R1	1	396.2763977050781	3	395.876523	1184.60774	-0.066858	-2.6468E-05	0.065653	2.5991E-05	-0.0012051	-4.7706E-07	395.8764466212977	33.383	0.45797	33.383	33.14	33.597	0					18	8	3	0	0	0	0.25548	1	10910	10910		57.108	39.665	1	4835400			63371	1305	46266	46626	61721	61721					0.022819774406116267
YLDKDLKQY	9	Unmodified	_YLDKDLKQY_					0	0	0		nc|ENSG00000059758|Q00537-2|CDK17;ENSG00000059758|ENST00000261211|CDK17;ENST00000428400.5_1_X:47082893-47085639:+|nuORF;ENSG00000102225|ENST00000357227|CDK16;nc|ENSG00000102225|Q00536-3|CDK16;nc|ENSG00000102225|Q00536-2|CDK16	nc|ENSG00000059758|Q00537-2|CDK17	nc|ENSG00000059758|Q00537-2|CDK17	MULTI-SECPEP	A375_MHC_IP_R2	2	396.2763977050781	3	395.876523	1184.60774	-0.18306	-7.2471E-05	0.63021	0.00024948	0.44714	0.00017701	395.876657692342	32.655	0.50821	33.392	33.112	33.62	0.73692					19	9	3	0	0	0	0.57806	1	11672	11672		30.703	21.159	1	4729000			63372	1305	46266	46626	61722	61722					0.022819774406116267
YLDKEDTFFY	10	Unmodified	_YLDKEDTFFY_					0	0	0		ENSG00000057935|ENST00000405094|MTA3;nc|ENSG00000057935|Q9BTC8-2|MTA3;MTA3|p.V135Afs*6|1|0.17|ENSG00000057935|chr2:42644149-42644149|T/-|frameshift_variant	ENSG00000057935|ENST00000405094|MTA3	ENSG00000057935|ENST00000405094|MTA3	MULTI-SECPEP	A375_MHC_IP_R1	1	671.2057495117188	2	670.805894	1339.59723	-0.49732	-0.00033361	0.11139	7.472E-05	-0.38593	-0.00025889	670.8058960540199	88.609	0.91511	88.609	88.256	89.171	0					40	17	4	0	0	0	0.43685	1	32511	32511		64.927	44.473	1	13823000			63373	1289	46267	46627	61723	61723					-0.058980500044981454
YLDKEDTFFY	10	Unmodified	_YLDKEDTFFY_					0	0	0		ENSG00000057935|ENST00000405094|MTA3;nc|ENSG00000057935|Q9BTC8-2|MTA3;MTA3|p.V135Afs*6|1|0.17|ENSG00000057935|chr2:42644149-42644149|T/-|frameshift_variant	ENSG00000057935|ENST00000405094|MTA3	ENSG00000057935|ENST00000405094|MTA3	MULTI-MSMS	A375_MHC_IP_R2	2	671.7066650390625	2	670.805894	1339.59723	-0.68434	-0.00045906	0.42782	0.00028699	-0.25651	-0.00017207	670.8059412638851	88.016	0.70998	88.748	88.468	89.178	0.7318					36	13	4	0	0	0	0.52785	1	33451	33451		26.268	10.421	1	13425000			63374	1289	46267	46627	61724	61724					-0.058980500044981454
YLDKGILKY	9	Unmodified	_YLDKGILKY_					0	0	0		nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3	nc|ENSG00000070882|Q9H4L5-8|OSBPL3	nc|ENSG00000070882|Q9H4L5-8|OSBPL3	MULTI-MSMS	A375_MHC_IP_R1	1	371.9497985839844	3	371.549859	1111.62775	0.23457	8.7155E-05	0.042812	1.5907E-05	0.27738	0.00010306	371.54986569402485	52.617	1.8788	52.617	51.982	53.861	0					89	36	4	0	0	0	0.037085	1	18680	18680		69.338	42.115	1	46479000			63375	1502	46268	46628	61725	61725					0.07639773171240449
YLDKGILKY	9	Unmodified	_YLDKGILKY_					0	0	0		nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3	nc|ENSG00000070882|Q9H4L5-8|OSBPL3	nc|ENSG00000070882|Q9H4L5-8|OSBPL3	MULTI-SECPEP	A375_MHC_IP_R1	1	557.2205810546875	2	556.82115	1111.62775	-0.6447	-0.00035898	0.12226	6.808E-05	-0.52244	-0.0002909	556.8211819841099	52.617	0.76213	52.617	52.336	53.099	0					26	14	2	0	0	0	0.16237	1	18685	18685		55.235	13.395	1	16424000			63376	1502	46268	46628	61726	61726					0.07639773171240449
YLDKGILKY	9	Unmodified	_YLDKGILKY_					0	0	0		nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3	nc|ENSG00000070882|Q9H4L5-8|OSBPL3	nc|ENSG00000070882|Q9H4L5-8|OSBPL3	MULTI-MSMS	A375_MHC_IP_R2	2	371.9494934082031	3	371.549859	1111.62775	0.12962	4.8161E-05	-0.12736	-4.7321E-05	0.0022624	8.4058E-07	371.54979792614836	51.868	1.1669	52.62	52.27	53.437	0.75225					41	22	2	0	0	0	0.10637	1	19470	19470		49.527	32.961	1	42377000			63377	1502	46268	46628	61727	61727					0.07639773171240449
YLDKGILKY	9	Unmodified	_YLDKGILKY_					0	0	0		nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3	nc|ENSG00000070882|Q9H4L5-8|OSBPL3	nc|ENSG00000070882|Q9H4L5-8|OSBPL3	MULTI-SECPEP	A375_MHC_IP_R2	2	557.113037109375	2	556.82115	1111.62775	-1.0665	-0.00059385	0.3612	0.00020112	-0.7053	-0.00039273	556.8213112655379	51.848	0.56139	52.6	52.321	52.882	0.75225					20	10	2	0	0	0	0.058501	1	19555	19555		78.06	28.127	1	14424000			63378	1502	46268	46628	61728	61728					0.07639773171240449
YLDKMNNNI	9	Oxidation (M)	_YLDKM(Oxidation (M))NNNI_		YLDKM(1)NNNI		YLDKM(70)NNNI	0	0	1		nc|ENSG00000144560|Q14135-4|VGLL4;ENSG00000144560|ENST00000430365|VGLL4	nc|ENSG00000144560|Q14135-4|VGLL4	nc|ENSG00000144560|Q14135-4|VGLL4	MULTI-MSMS	A375_MHC_IP_R1	1	571.1712646484375	2	570.771331	1139.52811	-0.40246	-0.00022971	0.051751	2.9538E-05	-0.35071	-0.00020018	570.7712060492192	27.573	0.3541	27.573	27.432	27.786	0					11	6	2	0	0	0	0.035419	1	8411	8411		70.332	20.399	1	3654800			63379	5493	46269	46629	61729	61729		293			-0.03607412505039065
YLDKMNNNI	9	Oxidation (M)	_YLDKM(Oxidation (M))NNNI_		YLDKM(1)NNNI		YLDKM(50)NNNI	0	0	1		nc|ENSG00000144560|Q14135-4|VGLL4;ENSG00000144560|ENST00000430365|VGLL4	nc|ENSG00000144560|Q14135-4|VGLL4	nc|ENSG00000144560|Q14135-4|VGLL4	MULTI-MSMS	A375_MHC_IP_R2	2	571.171630859375	2	570.771331	1139.52811	-0.42118	-0.0002404	0.088473	5.0498E-05	-0.3327	-0.0001899	570.7714553022676	27.037	0.35891	27.715	27.535	27.894	0.67831					14	6	3	0	0	0	0.10622	1	9215	9215		49.554	11.379	1	2038300			63380	5493	46269	46629	61730	61730		293			-0.03607412505039065
YLDKNLKLA	9	Unmodified	_YLDKNLKLA_					0	0	0			REV__ENST00000523321.5_1_8:95835614-95871872:+|nuORF	REV__ENST00000523321.5_1_8:95835614-95871872:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	539.1715698242188	2	539.318774	1076.623	-0.6657	-0.00035902	0.32212	0.00017373	-0.34358	-0.0001853	539.3187642204764	43.709	0.30177	44.478	44.278	44.58	0.7691					7	5	2	0	0	0	0.65527	1	16242	16242		12.241	0	1	1140300	+		63381	20531	46270	46630	61731	61731					0.08774889028472899
YLDLRSFQMQY	11	Unmodified	_YLDLRSFQMQY_					0	0	0		ENSG00000117593|ENST00000649689|DARS2	ENSG00000117593|ENST00000649689|DARS2	ENSG00000117593|ENST00000649689|DARS2	MSMS	A375_MHC_IP_R1	1	488.47003173828125	3	488.571105	1462.69149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.092	1	60.092	59.592	60.592	0								0	0	0	0.16336	1	21629	21629		1.2148	0	1				63382	3496	46271	46631	61732	61732					-0.02135234453976409
YLDLSAPFEQ	10	Unmodified	_YLDLSAPFEQ_					0	0	0		nc|ENSG00000068078|P22607-3|FGFR3;ENSG00000068078|ENST00000440486|FGFR3;nc|ENSG00000068078|P22607-2|FGFR3	nc|ENSG00000068078|P22607-3|FGFR3	nc|ENSG00000068078|P22607-3|FGFR3	MSMS	A375_MHC_IP_R1	1	591.7792358398438	2	591.787504	1181.56045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.5	1	104.5	104	105	0								0	0	0	0.1524	1	38370	38370		13.042	0	1				63383	1451	46272	46632	61733	61733					-0.023063018303673744
YLDLSENRL	9	Unmodified	_YLDLSENRL_					0	0	0		FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENST00000584444.5_1_17:18156710-18162004:-|nuORF;ENST00000478416.1_1_17:18157237-18162004:-|nuORF	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	562.1928100585938	2	561.793121	1121.57169	-0.8417	-0.00047286	0.31524	0.0001771	-0.52646	-0.00029576	561.7932090146322	67.78	0.55686	67.78	67.449	68.006	0					18	10	2	0	0	0	0.11638	1	24543	24543		51.63	22.548	1	5265200			63384	8107	46273	46633	61734	61734					0.0157652026375672
YLDLSENRL	9	Unmodified	_YLDLSENRL_					0	0	0		FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENST00000584444.5_1_17:18156710-18162004:-|nuORF;ENST00000478416.1_1_17:18157237-18162004:-|nuORF	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	FLII|p.T1164Vfs*14|1|0.57|ENSG00000177731|chr17:18245754-18245757|GTGT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	561.6304321289062	2	561.793121	1121.57169	-0.63081	-0.00035439	-0.39405	-0.00022137	-1.0249	-0.00057576	561.7930283653504	67.089	0.50631	67.826	67.495	68.001	0.73631					25	9	3	0	0	0	0.20451	1	25370	25370		41.956	22.699	1	7220300			63385	8107	46273	46633	61735	61735					0.0157652026375672
YLDNGVVFV	9	Unmodified	_YLDNGVVFV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	A375_MHC_IP_R1	1	513.6685180664062	2	513.26875	1024.52295	-0.039377	-2.0211E-05	-1.1055	-0.00056744	-1.1449	-0.00058765	513.2683851778085	113.32	0.80793	113.32	112.94	113.75	0					32	15	3	0	0	0	0.009271	1	41504	41504		103.75	25.764	1	7647100			63386	7247	46274	46634	61736	61736					0.011666516946661432
YLDNGVVFV	9	Unmodified	_YLDNGVVFV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	A375_MHC_IP_R1	1	1025.5748291015625	1	1025.53022	1024.52295	0.62999	0.00064607	-0.41827	-0.00042894	0.21172	0.00021713	1025.5296815348272	113.32	1.167	113.32	112.89	114.06	0					58	22	4	0	0	0	0.012968	1	41531	41531		92.491	21.358	1	81137000			63387	7247	46274	46634	61737	61737					0.011666516946661432
YLDNGVVFV	9	Unmodified	_YLDNGVVFV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	A375_MHC_IP_R2	2	513.6679077148438	2	513.26875	1024.52295	-0.54438	-0.00027941	0.11387	5.8445E-05	-0.43051	-0.00022097	513.2689529105085	112.54	1.4297	113.26	112.82	114.25	0.72458					44	27	3	0	0	0	0.0090669	1	42385	42385		100.37	22.387	1	11900000			63388	7247	46274	46634	61738	61738					0.011666516946661432
YLDNGVVFV	9	Unmodified	_YLDNGVVFV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	A375_MHC_IP_R2	2	1025.5810546875	1	1025.53022	1024.52295	0.24701	0.00025332	0.45444	0.00046604	0.70145	0.00071936	1025.5305999430723	112.52	1.7812	113.25	112.82	114.6	0.72458					68	34	4	0	0	0	0.10411	1	42914	42914		49.933	11.959	1	69659000			63389	7247	46274	46634	61739	61739					0.011666516946661432
YLDNVIGHSY	10	Unmodified	_YLDNVIGHSY_					0	0	0		nc|ENSG00000089195|Q9UJA5-3|TRMT6;nc|ENSG00000089195|Q9UJA5-2|TRMT6;ENSG00000089195|ENST00000203001|TRMT6;ENST00000473131.5_1_20:5924535-5931132:-|nuORF	nc|ENSG00000089195|Q9UJA5-3|TRMT6	nc|ENSG00000089195|Q9UJA5-3|TRMT6	MULTI-SECPEP	A375_MHC_IP_R1	1	591.1849975585938	2	590.785296	1179.55604	-0.43033	-0.00025423	0.2986	0.00017641	-0.13173	-7.7823E-05	590.7854762513483	65.231	1.271	65.231	64.851	66.122	0					74	24	4	0	0	0	0.0037825	1	23562	23562		195.04	136.36	1	41550000			63390	1920	46275	46635	61740	61740					-0.02655766253269576
YLDNVIGHSY	10	Unmodified	_YLDNVIGHSY_					0	0	0		nc|ENSG00000089195|Q9UJA5-3|TRMT6;nc|ENSG00000089195|Q9UJA5-2|TRMT6;ENSG00000089195|ENST00000203001|TRMT6;ENST00000473131.5_1_20:5924535-5931132:-|nuORF	nc|ENSG00000089195|Q9UJA5-3|TRMT6	nc|ENSG00000089195|Q9UJA5-3|TRMT6	MULTI-MSMS	A375_MHC_IP_R2	2	591.686767578125	2	590.785296	1179.55604	-0.5127	-0.00030289	0.19022	0.00011238	-0.32248	-0.00019052	590.7853611031519	64.524	0.96584	65.264	64.954	65.92	0.74023					60	18	5	0	0	0	0.11994	1	24568	24568		59.368	26.583	1	43488000			63391	1920	46275	46635	61741	61741					-0.02655766253269576
YLDPAQQNL	9	Unmodified	_YLDPAQQNL_					0	0	0		ENST00000421406.1_1_1:247353282-247372753:-|nuORF	ENST00000421406.1_1_1:247353282-247372753:-|nuORF	ENST00000421406.1_1_1:247353282-247372753:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	531.66650390625	2	531.266739	1060.51892	-0.64405	-0.00034216	0.1462	7.7673E-05	-0.49784	-0.00026449	531.2667887923994	64.498	1.9308	64.498	63.99	65.921	0					64	37	3	0	0	0	0.0098085	2	23271	23271;23493		114.2	65.856	1	31564000			63392	11737	46276	46636	61742;61743	61742					-0.008914377990549838
YLDPAQQNL	9	Unmodified	_YLDPAQQNL_					0	0	0		ENST00000421406.1_1_1:247353282-247372753:-|nuORF	ENST00000421406.1_1_1:247353282-247372753:-|nuORF	ENST00000421406.1_1_1:247353282-247372753:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	531.666015625	2	531.266739	1060.51892	-0.58433	-0.00031044	-0.016042	-8.5225E-06	-0.60037	-0.00031896	531.2667283984639	63.881	1.9832	64.621	64.241	66.225	0.74022					91	38	5	0	0	0	0.007896	1	24166	24166		129.77	73.595	1	44904000			63393	11737	46276	46636	61744	61744					-0.008914377990549838
YLDPAQQNLY	10	Unmodified	_YLDPAQQNLY_					0	0	0		ENST00000421406.1_1_1:247353282-247372753:-|nuORF	ENST00000421406.1_1_1:247353282-247372753:-|nuORF	ENST00000421406.1_1_1:247353282-247372753:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	612.7808227539062	2	612.798403	1223.58225	-0.17705	-0.0001085	-0.093543	-5.7323E-05	-0.27059	-0.00016582	612.798274709641	78.489	0.81035	78.489	78.099	78.909	0					40	15	4	0	0	0	0.060376	3	28668	28578;28668;28706		72.968	31.128	1	10359000			63394	11737	46277	46637	61745;61746;61747	61746					-0.020594970817910507
YLDPAQQNLY	10	Unmodified	_YLDPAQQNLY_					0	0	0		ENST00000421406.1_1_1:247353282-247372753:-|nuORF	ENST00000421406.1_1_1:247353282-247372753:-|nuORF	ENST00000421406.1_1_1:247353282-247372753:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	613.1983032226562	2	612.798403	1223.58225	-0.54606	-0.00033462	-0.13909	-8.5233E-05	-0.68515	-0.00041986	612.7983868004112	77.847	0.66347	78.59	78.265	78.929	0.74293					32	12	3	0	0	0	0.27978	1	29515	29515		60.074	27.768	1	7051400			63395	11737	46277	46637	61748	61748					-0.020594970817910507
YLDPAQRGV	9	Unmodified	_YLDPAQRGV_					0	0	0		nc|ENSG00000130731|Q96S19-3|METTL26;nc|ENSG00000130731|Q96S19-5|METTL26;nc|ENSG00000130731|Q96S19-2|METTL26;ENST00000448973.6_1_16:685849-686290:-|nuORF;nc|ENSG00000130731|Q96S19-6|METTL26;ENSG00000130731|ENST00000301686|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26	nc|ENSG00000130731|Q96S19-3|METTL26	nc|ENSG00000130731|Q96S19-3|METTL26	MULTI-MSMS	A375_MHC_IP_R1	1	510.1691589355469	2	509.769448	1017.52434	-0.68782	-0.00035063	-0.14771	-7.5297E-05	-0.83553	-0.00042593	509.76934107427905	36.781	1.015	36.781	36.439	37.454	0					59	19	5	0	0	0	0.0092511	1	12273	12273		103.42	39.857	1	148400000			63396	4273	46278	46638	61749	61749					0.01628285783431238
YLDPAQRGV	9	Unmodified	_YLDPAQRGV_					0	0	0		nc|ENSG00000130731|Q96S19-3|METTL26;nc|ENSG00000130731|Q96S19-5|METTL26;nc|ENSG00000130731|Q96S19-2|METTL26;ENST00000448973.6_1_16:685849-686290:-|nuORF;nc|ENSG00000130731|Q96S19-6|METTL26;ENSG00000130731|ENST00000301686|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26	nc|ENSG00000130731|Q96S19-3|METTL26	nc|ENSG00000130731|Q96S19-3|METTL26	MULTI-MSMS	A375_MHC_IP_R2	2	510.169189453125	2	509.769448	1017.52434	-0.88809	-0.00045272	0.0090029	4.5894E-06	-0.87909	-0.00044813	509.7694287075902	36.053	1.5257	36.816	36.384	37.91	0.76338					71	29	5	0	0	0	0.0098085	1	13025	13025		114.2	46.858	1	213150000			63397	4273	46278	46638	61750	61750					0.01628285783431238
YLDPAQRSL	9	Unmodified	_YLDPAQRSL_					0	0	0		nc|ENSG00000136870|O75820-2|ZNF189;ENSG00000136870|ENST00000339664|ZNF189	nc|ENSG00000136870|O75820-2|ZNF189	nc|ENSG00000136870|O75820-2|ZNF189	MULTI-MSMS	A375_MHC_IP_R1	1	532.182861328125	2	531.782556	1061.55056	-0.41961	-0.00022314	0.23683	0.00012594	-0.18278	-9.7198E-05	531.7828329455792	45.694	0.50666	45.694	45.434	45.941	0					19	9	4	0	0	0	0.39434	1	16041	16041		24.991	4.1198	1	3168100			63398	4833	46279	46639	61751	61751					0.022245549549097632
YLDPAQRSL	9	Unmodified	_YLDPAQRSL_					0	0	0		nc|ENSG00000136870|O75820-2|ZNF189;ENSG00000136870|ENST00000339664|ZNF189	nc|ENSG00000136870|O75820-2|ZNF189	nc|ENSG00000136870|O75820-2|ZNF189	MULTI-MSMS	A375_MHC_IP_R2	2	532.1821899414062	2	531.782556	1061.55056	-0.80118	-0.00042606	0.22454	0.00011941	-0.57664	-0.00030665	531.7825470276747	44.917	0.61163	45.686	45.34	45.951	0.76909					23	11	3	0	0	0	0.1915	1	16784	16784		38.615	10.986	1	2987800			63399	4833	46279	46639	61752	61752					0.022245549549097632
YLDPFLHHV	9	Unmodified	_YLDPFLHHV_					0	0	0		nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	MULTI-MSMS	A375_MHC_IP_R1	1	381.2660217285156	3	380.86607	1139.57638	0.5906	0.00022494	-0.008699	-3.3132E-06	0.5819	0.00022163	380.86596663280153	70.167	0.40658	70.167	69.882	70.289	0					18	7	3	0	0	0	0.53367	1	25469	25469		18.146	9.9908	1	2982100			63400	6748	46280	46640	61753	61753					0.012174491971563839
YLDPFLHHV	9	Unmodified	_YLDPFLHHV_					0	0	0		nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	MULTI-MSMS	A375_MHC_IP_R2	2	381.26605224609375	3	380.86607	1139.57638	0.079895	3.0429E-05	0.09919	3.7778E-05	0.17909	6.8207E-05	381.20052918694915	69.357	0.45493	70.091	69.829	70.284	0.73421					18	8	3	0	0	0	0.53367	1	26281	26281		18.146	9.9908	1	2216000			63401	6748	46280	46640	61754	61754					0.012174491971563839
YLDPNQRDL	9	Unmodified	_YLDPNQRDL_					0	0	0		ENSG00000189144|ENST00000536220|ZNF573	ENSG00000189144|ENST00000536220|ZNF573	ENSG00000189144|ENST00000536220|ZNF573	MULTI-MSMS	A375_MHC_IP_R2	2	567.6827392578125	2	567.28292	1132.55129	-0.56987	-0.00032328	-0.25516	-0.00014475	-0.82504	-0.00046803	567.2829085324831	41.3	1.8314	42.075	41.133	42.964	0.77451					117	35	5	0	0	0	0.0090499	1	15280	15280		100.09	33.634	1	36031000			63402	8964	46281	46641	61755	61755					-0.009686503960438131
YLDPNQRDLY	10	Unmodified	_YLDPNQRDLY_					0	0	0		ENSG00000189144|ENST00000536220|ZNF573	ENSG00000189144|ENST00000536220|ZNF573	ENSG00000189144|ENST00000536220|ZNF573	MULTI-MSMS	A375_MHC_IP_R1	1	649.214111328125	2	648.814584	1295.61462	-0.1998	-0.00012963	-0.19863	-0.00012887	-0.39843	-0.00025851	648.8144319196953	54.389	0.96235	54.389	54.063	55.025	0					52	18	4	0	0	0	0.006963	1	19370	19370		132.22	42.085	1	60877000			63403	8964	46282	46642	61756	61756					-0.021367096788026174
YLDPNQRDLY	10	Unmodified	_YLDPNQRDLY_					0	0	0		ENSG00000189144|ENST00000536220|ZNF573	ENSG00000189144|ENST00000536220|ZNF573	ENSG00000189144|ENST00000536220|ZNF573	MULTI-MSMS	A375_MHC_IP_R2	2	649.2142333984375	2	648.814584	1295.61462	-1.1422	-0.00074108	0.15715	0.00010196	-0.98506	-0.00063912	648.8146191942501	53.76	1.0718	54.511	54.198	55.27	0.75105					50	20	4	0	0	0	0.012014	2	20248	20248;20355		91.085	20.753	1	59089000			63404	8964	46282	46642	61757;61758	61757					-0.021367096788026174
YLDPRITVA	9	Unmodified	_YLDPRITVA_					0	0	0		ENSG00000198900|ENST00000361337|TOP1;TOP1|p.N722S|1|0.05|ENSG00000198900|chr20:41122125-41122125|A/G|missense_variant	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-MSMS	A375_MHC_IP_R1	1	524.4400634765625	2	524.295299	1046.57605	-0.59759	-0.00031331	0.17703	9.2815E-05	-0.42056	-0.0002205	524.2953298987283	65.336	2.0856	65.336	64.954	67.04	0					103	40	5	0	0	0	0.39434	1	23555	23555		24.991	7.8781	1	103370000			63405	9362	46283	46643	61759	61759					0.054620294773030764
YLDPSVLSGV	10	Unmodified	_YLDPSVLSGV_					0	0	0		nc|ENSG00000170540|Q15041-3|ARL6IP1;ENST00000569976.5_1_16:18806770-18812824:-|nuORF;nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1	nc|ENSG00000170540|Q15041-3|ARL6IP1	nc|ENSG00000170540|Q15041-3|ARL6IP1	MULTI-MSMS	A375_MHC_IP_R1	1	525.6788940429688	2	525.279315	1048.54408	-0.30616	-0.00016082	-0.062253	-3.27E-05	-0.36841	-0.00019352	525.2792251130531	110.16	0.60871	110.16	109.88	110.49	0					17	11	2	0	0	0	0.0064649	1	40401	40401		103.75	51.48	1	3183800			63406	7520	46284	46644	61760	61760					0.02174617003538515
YLDPSVLSGV	10	Unmodified	_YLDPSVLSGV_					0	0	0		nc|ENSG00000170540|Q15041-3|ARL6IP1;ENST00000569976.5_1_16:18806770-18812824:-|nuORF;nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1	nc|ENSG00000170540|Q15041-3|ARL6IP1	nc|ENSG00000170540|Q15041-3|ARL6IP1	MULTI-MSMS	A375_MHC_IP_R2	2	525.6786499023438	2	525.279315	1048.54408	-0.39391	-0.00020691	0.17216	9.0434E-05	-0.22175	-0.00011648	525.2793689099186	109.45	1.0173	110.19	109.52	110.54	0.74683					23	19	2	0	0	0	0.011296	1	41313	41313		123.45	56.107	1	2205500			63407	7520	46284	46644	61761	61761					0.02174617003538515
YLDPVQRDL	9	Unmodified	_YLDPVQRDL_					0	0	0		ENST00000467680.5_1_7:99159903-99161679:+|nuORF;nc|ENSG00000197343|Q8N720-2|ZNF655	ENST00000467680.5_1_7:99159903-99161679:+|nuORF	ENST00000467680.5_1_7:99159903-99161679:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	560.1834106445312	2	559.795663	1117.57677	-0.48282	-0.00027028	0.65406	0.00036614	0.17124	9.5858E-05	559.7960940156511	60.114	1.5771	60.114	59.548	61.126	0					70	30	4	0	0	0	0.051108	1	21635	21635		84.522	38.782	1	41059000			63408	12283	46285	46645	61762	61762					0.022688241263722375
YLDPVQRDL	9	Unmodified	_YLDPVQRDL_					0	0	0		ENST00000467680.5_1_7:99159903-99161679:+|nuORF;nc|ENSG00000197343|Q8N720-2|ZNF655	ENST00000467680.5_1_7:99159903-99161679:+|nuORF	ENST00000467680.5_1_7:99159903-99161679:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	560.1949462890625	2	559.795663	1117.57677	-1.0627	-0.00059487	0.13759	7.7023E-05	-0.92507	-0.00051785	559.7958167470814	59.37	1.6241	60.117	59.742	61.366	0.74714					71	31	3	0	0	0	0.022012	1	22415	22415		97.741	33.781	1	40240000			63409	12283	46285	46645	61763	61763					0.022688241263722375
YLDPVQRDLY	10	Unmodified	_YLDPVQRDLY_					0	0	0		ENST00000467680.5_1_7:99159903-99161679:+|nuORF;nc|ENSG00000197343|Q8N720-2|ZNF655	ENST00000467680.5_1_7:99159903-99161679:+|nuORF	ENST00000467680.5_1_7:99159903-99161679:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	641.7271728515625	2	641.327328	1280.6401	-0.52563	-0.0003371	0.12938	8.2972E-05	-0.39625	-0.00025413	641.3272109630823	70.673	0.56296	70.673	70.442	71.005	0					17	10	2	0	0	0	0.3329	1	25671	25671		36.395	10.374	1	4472700			63410	12283	46286	46646	61764	61764					0.011007648436361706
YLDQISRY	8	Unmodified	_YLDQISRY_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	A375_MHC_IP_R1	1	529.6690673828125	2	529.269281	1056.52401	-0.39935	-0.00021136	-0.27156	-0.00014373	-0.67091	-0.00035509	529.2692710742148	51.792	1.2194	51.792	51.27	52.49	0					68	23	4	0	0	0	0.11271	2	18362	18362;18388		92.653	28.417	1	24336000			63411	4331	46287	46647	61765;61766	61765					-0.0019913393641672883
YLDQISRY	8	Unmodified	_YLDQISRY_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	A375_MHC_IP_R2	2	529.9617309570312	2	529.269281	1056.52401	-0.70646	-0.00037391	-0.47431	-0.00025104	-1.1808	-0.00062495	529.269186108085	51.196	1.2155	51.948	51.207	52.423	0.75225					69	23	5	0	0	0	0.054387	3	19267	19173;19203;19267		103.35	39.117	1	26197000			63412	4331	46287	46647	61767;61768;61769	61769					-0.0019913393641672883
YLDQISRYY	9	Unmodified	_YLDQISRYY_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-SECPEP	A375_MHC_IP_R1	1	611.2007446289062	2	610.800946	1219.58734	-0.33244	-0.00020305	-0.11172	-6.8241E-05	-0.44416	-0.00027129	610.8009292802926	73.342	0.76118	73.342	73.082	73.843	0					28	14	3	0	0	0	0.049608	1	26714	26714		93.938	52.098	1	4826600			63413	4331	46288	46648	61770	61770					-0.013671932191755332
YLDQISRYY	9	Unmodified	_YLDQISRYY_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-SECPEP	A375_MHC_IP_R2	2	611.2002563476562	2	610.800946	1219.58734	-0.56828	-0.00034711	-0.40729	-0.00024877	-0.97557	-0.00059588	610.8005706626651	72.726	0.76349	73.462	73.175	73.938	0.73541					30	14	3	0	0	0	0.063333	1	27596	27596		84.522	50.12	1	4213600			63414	4331	46288	46648	61771	61771					-0.013671932191755332
YLDQKQRSF	9	Unmodified	_YLDQKQRSF_					0	0	0			REV__nc|ENSG00000140937|P55287-2|CDH11	REV__nc|ENSG00000140937|P55287-2|CDH11	MULTI-MSMS	A375_MHC_IP_R1	1	395.9453430175781	3	395.540134	1183.59857	0.088335	3.494E-05	0.19237	7.6091E-05	0.28071	0.00011103	395.5401737386656	40.579	1.0133	40.579	40.05	41.063	0					41	19	5	0	0	0	0.28079	1	13884	13884		32.037	6.0168	1	33048000	+		63415	27264	46289	46649	61772	61772					0.01411628874939197
YLDQRELLL	9	Unmodified	_YLDQRELLL_					0	0	0		ENSG00000136152|ENST00000349995|COG3;nc|ENSG00000136152|Q96JB2-2|COG3	ENSG00000136152|ENST00000349995|COG3	ENSG00000136152|ENST00000349995|COG3	MULTI-SECPEP	A375_MHC_IP_R1	1	582.0975341796875	2	581.826963	1161.63937	-0.37029	-0.00021544	0.85738	0.00049885	0.48709	0.0002834	582.3289497549018	90.192	0.50642	90.192	89.88	90.387	0					18	9	3	0	0	0	0.57304	1	33177	33177		29.841	3.5724	1	2492700			63416	4758	46290	46650	61773	61773					0.06501970194585738
YLDRQVADL	9	Unmodified	_YLDRQVADL_					0	0	0			REV__ENSG00000187187|ENST00000347077|ZNF546	REV__ENSG00000187187|ENST00000347077|ZNF546	MULTI-SECPEP	A375_MHC_IP_R1	1	546.2023315429688	2	546.787838	1091.56112	-0.64996	-0.00035539	-0.11626	-6.3572E-05	-0.76623	-0.00041896	546.7882201158354	68.52	0.75994	68.52	68.26	69.02	0					23	14	2	0	0	0	0.69507	1	24807	24807		9.3831	0	1	2291400	+		63417	22012	46291	46651	61774	61774					0.01900537609321873
YLDRQVPDL	9	Unmodified	_YLDRQVPDL_					0	0	0			REV__ENST00000586068.5_1_19:37721355-37726669:+|nuORF	REV__ENST00000586068.5_1_19:37721355-37726669:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	560.1956176757812	2	559.795663	1117.57677	-0.46714	-0.0002615	0.54919	0.00030743	0.082047	4.593E-05	559.7959797151055	68.801	1.2689	68.801	68.057	69.326	0					25	16	2	0	0	0	0.23894	1	24955	24955		36.127	0	1	5685300	+		63418	22082	46292	46652	61775	61775					0.022688241263722375
YLDSAQRNLY	10	Unmodified	_YLDSAQRNLY_					0	0	0		ENST00000334116.7_2_19:37042871-37064163:-|nuORF;ENSG00000186020|ENST00000591340|ZNF529	ENST00000334116.7_2_19:37042871-37064163:-|nuORF	ENST00000334116.7_2_19:37042871-37064163:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	622.2100219726562	2	621.809302	1241.60405	-0.52309	-0.00032526	0.5	0.00031091	-0.023088	-1.4356E-05	621.8095336662101	47.237	0.61649	47.237	46.85	47.467	0					18	11	2	0	0	0	0.21482	1	16586	16586		47.732	15.694	1	2157900			63419	8716	46293	46653	61776	61776					-0.007086923332508377
YLDSAQRNLY	10	Unmodified	_YLDSAQRNLY_					0	0	0		ENST00000334116.7_2_19:37042871-37064163:-|nuORF;ENSG00000186020|ENST00000591340|ZNF529	ENST00000334116.7_2_19:37042871-37064163:-|nuORF	ENST00000334116.7_2_19:37042871-37064163:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	622.2090454101562	2	621.809302	1241.60405	-0.5951	-0.00037004	-0.44338	-0.0002757	-1.0385	-0.00064574	622.3102180309324	46.473	0.65978	47.238	46.957	47.617	0.76519					21	12	2	0	0	0	0.21617	1	17420	17420		47.594	11.467	1	1979500			63420	8716	46293	46653	61777	61777					-0.007086923332508377
YLDSIPPGQY	10	Unmodified	_YLDSIPPGQY_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	A375_MHC_IP_R1	1	576.64453125	2	576.782222	1151.54989	-0.25868	-0.0001492	0.13318	7.6814E-05	-0.1255	-7.2388E-05	576.7823056544471	80.403	2.1872	80.403	79.47	81.657	0					79	42	2	0	0	0	0.25271	1	29243	29243		43.858	16.975	1	1810400			63421	7492	46294	46654	61778	61778					-0.019822844848022214
YLDSIPPGQY	10	Unmodified	_YLDSIPPGQY_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	A375_MHC_IP_R2	2	576.6934204101562	2	576.782222	1151.54989	-0.089886	-5.1844E-05	-0.31946	-0.00018426	-0.40935	-0.0002361	576.7821079946593	79.936	1.5735	80.681	79.337	80.91	0.74474					42	30	2	0	0	0	0.25271	1	30344	30344		43.858	23.405	1	2747300			63422	7492	46294	46654	61779	61779					-0.019822844848022214
YLDSIPPGQY	10	Unmodified	_YLDSIPPGQY_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-SECPEP	A375_MHC_IP_R2	2	577.181640625	2	576.782222	1151.54989	-0.20185	-0.00011642	-0.60028	-0.00034623	-0.80213	-0.00046265	576.7818201994938	80.339	0.96511	81.084	80.759	81.724	0.74474					31	18	2	0	0	0	0.38158	1	30422	30422		52.268	25.385	1	1912200			63423	7492	46294	46654	61780	61780					-0.019822844848022214
YLDSQTVKENW	11	Unmodified	_YLDSQTVKENW_					0	0	0			REV__ENSG00000101150|ENST00000346249|TPD52L2	REV__ENSG00000101150|ENST00000346249|TPD52L2	MULTI-MSMS	A375_MHC_IP_R1	1	692.8060913085938	2	691.832974	1381.6514	-0.59659	-0.00041274	-0.22457	-0.00015536	-0.82116	-0.0005681	691.832839975845	98.726	0.61163	98.726	98.455	99.067	0					32	11	4	0	0	0	0.72728	1	36322	36322		11.495	2.7493	1	6615300	+		63424	17144	46295	46655	61781	61781					-0.02416457852905296
YLDSQTVKENW	11	Unmodified	_YLDSQTVKENW_					0	0	0			REV__ENSG00000101150|ENST00000346249|TPD52L2	REV__ENSG00000101150|ENST00000346249|TPD52L2	MULTI-SECPEP	A375_MHC_IP_R2	2	692.2323608398438	2	691.832974	1381.6514	-0.72325	-0.00050037	0.3182	0.00022014	-0.40505	-0.00028023	691.833052992575	98.051	0.66197	98.811	98.436	99.098	0.75977					26	12	3	0	0	0	0.76597	1	37173	37173		34.932	3.6637	1	7257700	+		63425	17144	46295	46655	61782	61782					-0.02416457852905296
YLDTINRSV	9	Unmodified	_YLDTINRSV_					0	0	0		ENST00000493829.5_1_2:85843459-85872221:+|nuORF;nc|ENSG00000168883|Q53GS9-3|USP39;ENSG00000168883|ENST00000323701|USP39;ENST00000465282.5_1_2:85839448-85850777:+|nuORF;ENST00000459775.5_1_2:85830068-85850777:+|nuORF	ENST00000493829.5_1_2:85843459-85872221:+|nuORF;ENST00000459775.5_1_2:85830068-85850777:+|nuORF	ENST00000493829.5_1_2:85843459-85872221:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	541.1875610351562	2	540.787838	1079.56112	-0.64724	-0.00035002	-0.21015	-0.00011365	-0.85739	-0.00046367	540.7877686603172	46.352	0.45162	46.352	46.094	46.545	0					18	8	3	0	0	0	0.41879	1	16305	16305		23.79	3.3362	1	2937100			63426	7352;12156	46296	46656	61783	61783					0.024525376093151863
YLDTINRSV	9	Unmodified	_YLDTINRSV_					0	0	0		ENST00000493829.5_1_2:85843459-85872221:+|nuORF;nc|ENSG00000168883|Q53GS9-3|USP39;ENSG00000168883|ENST00000323701|USP39;ENST00000465282.5_1_2:85839448-85850777:+|nuORF;ENST00000459775.5_1_2:85830068-85850777:+|nuORF	ENST00000493829.5_1_2:85843459-85872221:+|nuORF;ENST00000459775.5_1_2:85830068-85850777:+|nuORF	ENST00000493829.5_1_2:85843459-85872221:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	541.187744140625	2	540.787838	1079.56112	-0.85648	-0.00046317	-0.039395	-2.1304E-05	-0.89588	-0.00048448	540.787813355659	45.592	0.55504	46.357	46.048	46.603	0.76519					19	10	3	0	0	0	0.47674	1	17054	17054		23.79	7.6407	1	2663200			63427	7352;12156	46296	46656	61784	61784					0.024525376093151863
YLDTINRSV	9	Unmodified	_YLDTINRSV_					0	0	0		ENST00000493829.5_1_2:85843459-85872221:+|nuORF;nc|ENSG00000168883|Q53GS9-3|USP39;ENSG00000168883|ENST00000323701|USP39;ENST00000465282.5_1_2:85839448-85850777:+|nuORF;ENST00000459775.5_1_2:85830068-85850777:+|nuORF	ENST00000493829.5_1_2:85843459-85872221:+|nuORF;ENST00000459775.5_1_2:85830068-85850777:+|nuORF	ENST00000493829.5_1_2:85843459-85872221:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	540.787838	1079.56112	-0.64724	-0.00035002	-0.21015	-0.00011365	-0.85739	-0.00046367	540.7877686603172	46.352	0.45162	46.352	46.094	46.545	0	-0.0023916	-0.00010045	NaN	23.79	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2937100			63428	7352;12156	46296	46656							0.024525376093151863
YLDTITLPRC	10	Unmodified	_YLDTITLPRC_					0	0	0			REV__ANKRD50|p.E368D|1|0.23|ENSG00000151458|chr4:124672173-124672173|T/A|missense_variant	REV__ANKRD50|p.E368D|1|0.23|ENSG00000151458|chr4:124672173-124672173|T/A|missense_variant	MSMS	A375_MHC_IP_R1	1	597.884033203125	2	597.812999	1193.61144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.723	1	95.723	95.223	96.223	0								0	0	0	0.14622	1	35183	35183		24.991	1.8425	1		+		63429	15412	46297	46657	61785	61785					0.022383239428108936
YLDTVPEVY	9	Unmodified	_YLDTVPEVY_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	A375_MHC_IP_R1	1	549.6796264648438	2	549.771322	1097.52809	-0.70817	-0.00038933	-0.28355	-0.00015589	-0.99173	-0.00054522	549.771072084592	94.759	0.45981	94.759	94.446	94.905	0					15	8	3	0	0	0	0.067501	1	34876	34876		57.471	36.6	1	1334700			63430	9866	46298	46658	61786	61786					-0.016770892333852316
YLDTVPEVY	9	Unmodified	_YLDTVPEVY_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	A375_MHC_IP_R2	2	549.67919921875	2	549.771322	1097.52809	-0.59457	-0.00032688	-0.43002	-0.00023641	-1.0246	-0.00056329	549.7709554287607	94.115	0.45425	94.859	94.566	95.02	0.74474					14	8	3	0	0	0	0.042197	2	35747	35697;35747		67.344	45.597	1	1288400			63431	9866	46298	46658	61787;61788	61788					-0.016770892333852316
YLDTVQVCIE	10	Unmodified	_YLDTVQVCIE_					0	0	0			REV__ENSG00000169375|ENST00000394947|SIN3A	REV__ENSG00000169375|ENST00000394947|SIN3A	MSMS	A375_MHC_IP_R2	2	591.8910522460938	2	591.789189	1181.56383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.941	1	85.677	85.177	86.177	0.73601								0	0	0	0.15308	1	32291	32291		10.824	1.4765	1		+		63432	20928	46299	46659	61789	61789					-0.019693750480428207
YLDTWYIY	8	Unmodified	_YLDTWYIY_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-MSMS	A375_MHC_IP_R1	1	569.2003173828125	2	568.768583	1135.52261	-0.38354	-0.00021815	-0.75312	-0.00042835	-1.1367	-0.0006465	568.7680432196989	58.223	0.7619	58.223	57.974	58.736	0					26	14	2	0	0	0	0.72109	1	20989	20989		28.173	0	1	3635700	+		63433	16777	46300	46660	61790	61790					-0.03972768025209916
YLDVVQSNV	9	Unmodified	_YLDVVQSNV_					0	0	0		nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-4|UEVLD	nc|ENSG00000151116|Q8IX04-3|UEVLD	nc|ENSG00000151116|Q8IX04-3|UEVLD	MULTI-SECPEP	A375_MHC_IP_R2	2	519.168701171875	2	518.769114	1035.52368	-0.66472	-0.00034484	0.28086	0.0001457	-0.38386	-0.00019914	518.7691600131434	73.719	0.61309	74.455	74.141	74.754	0.73541					34	11	4	0	0	0	0.046478	1	27955	27955		82.529	36.83	1	6940700			63434	5880	46301	46661	61791	61791					0.007334463437246086
YLDWAYRSGGY	11	Unmodified	_YLDWAYRSGGY_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000477860.1_1_17:30200326-30200766:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-SECPEP	A375_MHC_IP_R1	1	676.2091674804688	2	675.809302	1349.60405	-0.58767	-0.00039715	-0.0020632	-1.3943E-06	-0.58973	-0.00039854	675.8095801555429	79.444	0.46201	79.444	79.316	79.778	0					15	8	2	0	0	0	0.41565	1	29027	29027		62.869	41.332	1	2265100			63435	2825	46302	46662	61792	61792					-0.056766923332588703
YLDWAYRSGGY	11	Unmodified	_YLDWAYRSGGY_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000477860.1_1_17:30200326-30200766:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	A375_MHC_IP_R2	2	676.208740234375	2	675.809302	1349.60405	-0.60707	-0.00041027	0.028271	1.9106E-05	-0.5788	-0.00039116	675.8091075398585	78.977	0.5592	79.722	79.337	79.896	0.74473					16	10	2	0	0	0	0.45484	1	29981	29981		41.347	24.234	1	1635400			63436	2825	46302	46662	61793	61793					-0.056766923332588703
YLDWTIERV	9	Unmodified	_YLDWTIERV_					0	0	0		ENSG00000136636|ENST00000259154|KCTD3;nc|ENSG00000136636|Q9Y597-2|KCTD3	ENSG00000136636|ENST00000259154|KCTD3	ENSG00000136636|ENST00000259154|KCTD3	MULTI-SECPEP	A375_MHC_IP_R1	1	598.2109375	2	597.811313	1193.60807	-0.54967	-0.0003286	0.23653	0.0001414	-0.31314	-0.0001872	597.8113386507174	94.879	0.76365	94.879	94.548	95.312	0					37	14	4	0	0	0	0.15393	1	34821	34821		71.708	23.959	1	19911000			63437	4804	46303	46663	61794	61794					0.019013971604636026
YLDWTIERV	9	Unmodified	_YLDWTIERV_					0	0	0		ENSG00000136636|ENST00000259154|KCTD3;nc|ENSG00000136636|Q9Y597-2|KCTD3	ENSG00000136636|ENST00000259154|KCTD3	ENSG00000136636|ENST00000259154|KCTD3	MULTI-SECPEP	A375_MHC_IP_R2	2	598.2107543945312	2	597.811313	1193.60807	-0.35895	-0.00021459	0.31258	0.00018687	-0.046368	-2.7719E-05	597.8114285456031	94.151	0.75901	94.895	94.515	95.274	0.74474					43	14	4	0	0	0	0.11751	1	35734	35734		71.708	31.758	1	16265000			63438	4804	46303	46663	61795	61795					0.019013971604636026
YLDYDDTRY	9	Unmodified	_YLDYDDTRY_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L;ENST00000535343.5_1_12:132632219-132636084:+|nuORF	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	MULTI-MSMS	A375_MHC_IP_R1	1	612.6646118164062	2	612.264393	1222.51423	-0.25803	-0.00015798	0.20393	0.00012486	-0.054101	-3.3124E-05	612.2644257476751	51.143	1.1665	51.143	50.764	51.93	0					67	22	5	0	0	0	0.027818	3	18070	18022;18070;18292		76.825	42.423	1	82777000			63439	8623	46304	46664	61796;61797;61798	61797					-0.08812366732468035
YLDYDDTRY	9	Unmodified	_YLDYDDTRY_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L;ENST00000535343.5_1_12:132632219-132636084:+|nuORF	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	MULTI-MSMS	A375_MHC_IP_R2	2	612.6640014648438	2	612.264393	1222.51423	-0.66362	-0.00040631	0.33667	0.00020613	-0.32695	-0.00020018	612.2645348635479	50.633	0.80865	51.387	51.006	51.815	0.75406					55	15	5	0	0	0	0.027818	2	18969	18969;19193		76.825	34.985	1	70953000			63440	8623	46304	46664	61799;61800	61799					-0.08812366732468035
YLEDFITNI	9	Unmodified	_YLEDFITNI_					0	0	0		nc|ENSG00000138190|Q8TAG9-2|EXOC6;ENSG00000138190|ENST00000260762|EXOC6	nc|ENSG00000138190|Q8TAG9-2|EXOC6	nc|ENSG00000138190|Q8TAG9-2|EXOC6	MULTI-MSMS	A375_MHC_IP_R1	1	564.6834106445312	2	564.284597	1126.55464	-0.33545	-0.00018929	-1.1833	-0.0006677	-1.5187	-0.00085699	564.2837524796543	128.51	0.35464	128.51	128.33	128.68	0					14	6	3	0	0	0	0.0014061	1	49364	49364		149.99	71.845	1	12997000			63441	4970	46305	46665	61801	61801					-0.003574003420453664
YLEDFITNI	9	Unmodified	_YLEDFITNI_					0	0	0		nc|ENSG00000138190|Q8TAG9-2|EXOC6;ENSG00000138190|ENST00000260762|EXOC6	nc|ENSG00000138190|Q8TAG9-2|EXOC6	nc|ENSG00000138190|Q8TAG9-2|EXOC6	MULTI-MSMS	A375_MHC_IP_R2	2	564.6846313476562	2	564.284597	1126.55464	-0.56352	-0.00031798	0.19755	0.00011148	-0.36596	-0.00020651	564.2844692025582	128.24	0.35757	128.48	128.25	128.6	0.23946					11	6	3	0	0	0	0.0095277	1	50365	50365		108	43.761	1	10449000			63442	4970	46305	46665	61802	61802					-0.003574003420453664
YLEDRPLSQLY	11	Unmodified	_YLEDRPLSQLY_					0	0	0		ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	MULTI-MSMS	A375_MHC_IP_R1	1	699.25830078125	2	698.858992	1395.70343	-0.58842	-0.00041122	-0.22241	-0.00015543	-0.81083	-0.00056665	698.8586075344488	81.54	0.55634	81.54	81.303	81.86	0					18	10	3	0	0	0	0.11889	1	29800	29800		66.683	31.751	1	2686800			63443	4962	46306	46666	61803	61803					0.02140705560873357
YLEDRPLSQLY	11	Unmodified	_YLEDRPLSQLY_					0	0	0		ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	MULTI-MSMS	A375_MHC_IP_R2	2	699.2584228515625	2	698.858992	1395.70343	-0.79285	-0.00055409	-0.75547	-0.00052797	-1.5483	-0.0010821	698.8585111509612	80.934	0.51352	81.679	81.416	81.93	0.74474					14	9	2	0	0	0	0.30938	1	30766	30766		46.022	16.182	1	2464100			63444	4962	46306	46666	61804	61804					0.02140705560873357
YLEDTDRNL	9	Unmodified	_YLEDTDRNL_					0	0	0		ENST00000588207.1_1_18:57637691-57638603:+|nuORF;ENST00000606261.1_1_7:26224125-26225400:+|nuORF;ENSG00000050344|ENST00000056233|NFE2L3	ENST00000588207.1_1_18:57637691-57638603:+|nuORF	ENST00000588207.1_1_18:57637691-57638603:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	570.1721801757812	2	569.772385	1137.53022	-0.29344	-0.0001672	0.042207	2.4049E-05	-0.25124	-0.00014315	569.7723081391568	39.424	0.71066	39.424	39.033	39.744	0					34	13	4	0	0	0	0.058715	1	13459	13459		57.249	24.795	1	8293300			63445	1229	46307	46667	61805	61805					-0.03304660495564349
YLEDTDRNL	9	Unmodified	_YLEDTDRNL_					0	0	0		ENST00000588207.1_1_18:57637691-57638603:+|nuORF;ENST00000606261.1_1_7:26224125-26225400:+|nuORF;ENSG00000050344|ENST00000056233|NFE2L3	ENST00000588207.1_1_18:57637691-57638603:+|nuORF	ENST00000588207.1_1_18:57637691-57638603:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	570.1715087890625	2	569.772385	1137.53022	-0.63527	-0.00036196	-0.30793	-0.00017545	-0.9432	-0.00053741	569.7723388014858	38.727	1.0723	39.501	38.636	39.708	0.77451					29	20	3	0	0	0	0.038931	1	14273	14273		100.09	40.017	1	7635000			63446	1229	46307	46667	61806	61806					-0.03304660495564349
YLEEFITNI	9	Unmodified	_YLEEFITNI_					0	0	0		nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-SECPEP	A375_MHC_IP_R1	1	571.6918334960938	2	571.292422	1140.57029	0.1141	6.5182E-05	-0.098816	-5.6453E-05	0.015279	8.7286E-06	571.2924425983017	127.29	0.5559	127.29	127.16	127.72	0					18	10	2	0	0	0	0.011358	1	48784	48784		120.45	64.273	1	28401000			63447	5457	46308	46668	61807	61807					0.005628861749983116
YLEEFITNI	9	Unmodified	_YLEEFITNI_					0	0	0		nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-MSMS	A375_MHC_IP_R2	2	571.6920776367188	2	571.292422	1140.57029	-0.2812	-0.00016065	0.46436	0.00026529	0.18316	0.00010464	571.2925706728413	126.97	0.40472	127.24	127.06	127.46	0.26593					18	7	4	0	0	0	0.0096822	2	49751	49713;49751		149.99	74.234	1	13319000			63448	5457	46308	46668	61808;61809	61809					0.005628861749983116
YLEELSQRY	9	Unmodified	_YLEELSQRY_					0	0	0		nc|ENSG00000094975|Q9UBS9-2|SUCO;ENSG00000094975|ENST00000263688|SUCO	nc|ENSG00000094975|Q9UBS9-2|SUCO	nc|ENSG00000094975|Q9UBS9-2|SUCO	MULTI-MSMS	A375_MHC_IP_R1	1	601.6991577148438	2	600.798403	1199.58225	-0.35484	-0.00021318	-0.88857	-0.00053385	-1.2434	-0.00074704	600.7976957707723	57.442	1.423	57.442	56.905	58.328	0					63	27	4	0	0	0	0.0053789	1	20568	20568		163.04	94.955	1	28925000			63449	2031	46309	46669	61810	61810					-0.00955497081804424
YLEELSQRY	9	Unmodified	_YLEELSQRY_					0	0	0		nc|ENSG00000094975|Q9UBS9-2|SUCO;ENSG00000094975|ENST00000263688|SUCO	nc|ENSG00000094975|Q9UBS9-2|SUCO	nc|ENSG00000094975|Q9UBS9-2|SUCO	MULTI-MSMS	A375_MHC_IP_R2	2	601.197021484375	2	600.798403	1199.58225	-0.93069	-0.00055916	-0.82685	-0.00049677	-1.7575	-0.0010559	600.7976672567901	56.785	1.273	57.535	57	58.273	0.75015					62	24	4	0	0	0	0.0099679	3	21431	21403;21431;21720		121.53	71.601	1	33376000			63450	2031	46309	46669	61811;61812;61813	61812					-0.00955497081804424
YLEELTREF	9	Unmodified	_YLEELTREF_					0	0	0			REV__ENSG00000033122|ENST00000651989|LRRC7	REV__ENSG00000033122|ENST00000651989|LRRC7	MULTI-SECPEP	A375_MHC_IP_R2	2	600.6817626953125	2	600.300778	1198.587	-0.62518	-0.0003753	2.7693	0.0016624	2.1441	0.0012871	600.8041693917684	72.534	0.25407	73.269	73.175	73.429	0.73541					6	4	2	0	0	0	0.46045	1	27563	27563		36.127	1.195	1	726610	+		63451	16306	46310	46670	61814	61814					-0.004346129390569331
YLEEPLTQV	9	Unmodified	_YLEEPLTQV_					0	0	0		ENST00000368302.3_1_1:156027838-156028159:+|nuORF;nc|ENSG00000116586|Q9Y2Q5-3|LAMTOR2;ENSG00000116586|ENST00000368305|LAMTOR2	ENST00000368302.3_1_1:156027838-156028159:+|nuORF	ENST00000368302.3_1_1:156027838-156028159:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	546.1470947265625	2	546.284597	1090.55464	-0.62153	-0.00033953	-1.0253	-0.00056011	-1.6468	-0.00089964	546.2836781732296	87.282	0.76069	87.282	86.73	87.491	0					20	14	2	0	0	0	0.59614	1	32056	32056		18.146	10.236	1	1375100			63452	3409	46311	46671	61815	61815					0.012985996579345738
YLEEPLTQV	9	Unmodified	_YLEEPLTQV_					0	0	0		ENST00000368302.3_1_1:156027838-156028159:+|nuORF;nc|ENSG00000116586|Q9Y2Q5-3|LAMTOR2;ENSG00000116586|ENST00000368305|LAMTOR2	ENST00000368302.3_1_1:156027838-156028159:+|nuORF	ENST00000368302.3_1_1:156027838-156028159:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	546.1472778320312	2	546.284597	1090.55464	-0.65413	-0.00035734	-1.1168	-0.00061008	-1.7709	-0.00096742	546.2843345298326	86.617	0.81624	87.35	86.896	87.712	0.733					31	15	3	0	0	0	0.41731	1	32933	32933		38.176	23.594	1	1396000			63453	3409	46311	46671	61816	61816					0.012985996579345738
YLEETSIRY	9	Unmodified	_YLEETSIRY_					0	0	0		ENSG00000158796|ENST00000368006|DEDD;nc|ENSG00000158796|O75618-2|DEDD	ENSG00000158796|ENST00000368006|DEDD	ENSG00000158796|ENST00000368006|DEDD	MULTI-MSMS	A375_MHC_IP_R1	1	587.6925048828125	2	587.292953	1172.57135	-0.14114	-8.2891E-05	-0.10942	-6.4264E-05	-0.25056	-0.00014715	587.2928868648173	54.373	0.60724	54.373	54.113	54.72	0					30	11	4	0	0	0	0.0092511	1	19379	19379		103.42	47.242	1	22145000			63454	6331	46312	46672	61817	61817					-0.008028994560845604
YLEETSIRY	9	Unmodified	_YLEETSIRY_					0	0	0		ENSG00000158796|ENST00000368006|DEDD;nc|ENSG00000158796|O75618-2|DEDD	ENSG00000158796|ENST00000368006|DEDD	ENSG00000158796|ENST00000368006|DEDD	MULTI-MSMS	A375_MHC_IP_R2	2	587.6929931640625	2	587.292953	1172.57135	-1.033	-0.00060668	0.35821	0.00021038	-0.67479	-0.0003963	587.2931308007696	53.729	0.66764	54.48	54.198	54.866	0.75105					34	12	4	0	0	0	0.012447	1	20239	20239		93.166	45.417	1	23457000			63455	6331	46312	46672	61818	61818					-0.008028994560845604
YLEFRYKRRVY	11	Unmodified	_YLEFRYKRRVY_					0	0	0		ENST00000414786.6_1_22:51113069-51169737:+|nuORF;nc|ENSG00000251322|Q9BYB0|SHANK3	ENST00000414786.6_1_22:51113069-51169737:+|nuORF	ENST00000414786.6_1_22:51113069-51169737:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	796.8703002929688	2	796.938442	1591.86233	-0.97298	-0.0007754	-4.3474	-0.0034646	-5.3204	-0.00424	797.4382669661105	123.86	0.25412	123.86	123.74	123.99	0					5	4	2	0	0	0	0.73647	1	46494	46494		2.7352	0	1	8489200			63456	11670	46313	46673	61819	61819					0.0900746397965122
YLEKIKKF	8	Unmodified	_YLEKIKKF_					0	0	0			REV__ENSG00000105229|ENST00000262971|PIAS4	REV__ENSG00000105229|ENST00000262971|PIAS4	MULTI-SECPEP	A375_MHC_IP_R1	1	535.2260131835938	2	534.826235	1067.63792	-1.0498	-0.00056148	0.48661	0.00026025	-0.56324	-0.00030124	534.8264284557348	38.263	0.35661	38.263	38.118	38.475	0					12	6	2	0	0	0	0.972	1	12993	12993		1.8442	0	1	2822400	+		63457	17363	46314	46674	61820	61820					0.10680380896474162
YLELHKKA	8	Unmodified	_YLELHKKA_					0	0	0			REV__nc|ENSG00000164338|Q8TED0-2|UTP15	REV__nc|ENSG00000164338|Q8TED0-2|UTP15	MULTI-MSMS	A375_MHC_IP_R2	2	1001.81982421875	1	1001.57784	1000.57057	0.21589	0.00021623	-1.057	-0.0010587	-0.8411	-0.00084243	1001.5774864741215	114.3	0.20225	115.01	114.88	115.08	0.70985					5	3	2	0	0	0	0.77702	2	43072	43072;43091		5.7604	0	1	2536400	+		63458	20486	46315	46675	61821;61822	61821					0.07030350685511166
YLENGKETL	9	Unmodified	_YLENGKETL_					0	0	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206341|P01893|HLA-H;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204525|ENST00000376228|HLA-C;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000204642|ENST00000259951|HLA-F	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-SECPEP	A375_MHC_IP_R1	1	534.173828125	2	533.774396	1065.53424	-0.70644	-0.00037708	-0.070366	-3.756E-05	-0.7768	-0.00041464	533.7744609898583	34.58	0.60554	34.58	34.154	34.759	0					35	11	4	0	0	0	0.042716	1	11395	11395		67.838	20.089	1	11117000			63459	9539	46316	46676	61823	61823					0.004094289981594557
YLENGKETL	9	Unmodified	_YLENGKETL_					0	0	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206341|P01893|HLA-H;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204525|ENST00000376228|HLA-C;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000204642|ENST00000259951|HLA-F	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-SECPEP	A375_MHC_IP_R2	2	533.6549682617188	2	533.774396	1065.53424	-1.2056	-0.00064351	1.477	0.00078839	0.27143	0.00014488	533.7746020717883	34.014	1.0654	34.766	34.196	35.262	0.75225					37	20	3	0	0	0	0.038931	1	12172	12172		63.227	21.388	1	10684000			63460	9539	46316	46676	61824	61824					0.004094289981594557
YLEPKLTQV	9	Unmodified	_YLEPKLTQV_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4;nc|ENSG00000068878|Q14997-3|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-SECPEP	A375_MHC_IP_R1	1	546.210205078125	2	545.810782	1089.60701	-0.56706	-0.00030951	0.096124	5.2466E-05	-0.47094	-0.00025704	545.8107909056615	60.897	0.66123	60.897	60.618	61.279	0					33	12	4	0	0	0	0.011143	1	21904	21904		125.04	79.338	1	20277000			63461	1468	46317	46677	61825	61825					0.0657918279155183
YLEPKLTQV	9	Unmodified	_YLEPKLTQV_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4;nc|ENSG00000068878|Q14997-3|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-SECPEP	A375_MHC_IP_R2	2	546.2103271484375	2	545.810782	1089.60701	-1.1298	-0.00061666	-0.041729	-2.2776E-05	-1.1715	-0.00063944	545.8107912826733	60.082	1.0158	60.829	60.553	61.569	0.74714					40	19	3	0	0	0	0.049608	1	22720	22720		93.938	61.152	1	20526000			63462	1468	46317	46677	61826	61826					0.0657918279155183
YLEPYLKEV	9	Unmodified	_YLEPYLKEV_					0	0	0		ENST00000521036.5_1_8:97243285-97243480:-|nuORF;ENST00000518876.1_1_8:97243285-97244208:-|nuORF;ENSG00000156467|ENST00000287022|UQCRB	ENST00000521036.5_1_8:97243285-97243480:-|nuORF	ENST00000521036.5_1_8:97243285-97243480:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	577.192626953125	2	577.310615	1152.60668	-0.21276	-0.00012283	0.062784	3.6246E-05	-0.14997	-8.6582E-05	577.3101985353442	76.008	0.55492	76.008	75.664	76.219	0					18	10	3	0	0	0	0.54812	1	27659	27659		24.991	0.97039	1	2178700			63463	6192	46318	46678	61827	61827					0.036477630716944986
YLEQLHQLY	9	Unmodified	_YLEQLHQLY_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-SECPEP	A375_MHC_IP_R1	1	604.2107543945312	2	603.811313	1205.60807	-0.43299	-0.00026145	0.059698	3.6046E-05	-0.3733	-0.0002254	603.8112341167013	76.597	1.0168	76.597	76.319	77.336	0					38	19	3	0	0	0	0.21838	1	27891	27891		74.2	26.451	1	13613000			63464	7325	46319	46679	61828	61828					0.013493971604930266
YLEQLHQLY	9	Unmodified	_YLEQLHQLY_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	A375_MHC_IP_R2	2	604.211181640625	2	603.811313	1205.60807	-0.43983	-0.00026558	0.14633	8.8354E-05	-0.29351	-0.00017722	603.8112569179478	75.919	1.12	76.66	76.181	77.301	0.74052					51	21	4	0	0	0	0.0098859	1	28781	28781		117.76	42.832	1	15414000			63465	7325	46319	46679	61829	61829					0.013493971604930266
YLEQLILKY	9	Unmodified	_YLEQLILKY_					0	0	0		ENSG00000169251|ENST00000351193|NMD3;ENST00000439704.1_1_7:63369621-63370485:-|nuORF;ENST00000478160.1_1_3:160945095-160953023:+|nuORF	ENSG00000169251|ENST00000351193|NMD3	ENSG00000169251|ENST00000351193|NMD3	MULTI-SECPEP	A375_MHC_IP_R1	1	591.2273559570312	2	591.842082	1181.66961	-0.31296	-0.00018522	0.13476	7.9759E-05	-0.17819	-0.00010546	591.8419585897415	103.75	0.40555	103.75	103.63	104.03	0					12	7	2	0	0	0	0.67539	1	38069	38069		21.537	9.2963	1	812600			63466	7396	46320	46680	61830	61830					0.08604328859769339
YLEQLILKY	9	Unmodified	_YLEQLILKY_					0	0	0		ENSG00000169251|ENST00000351193|NMD3;ENST00000439704.1_1_7:63369621-63370485:-|nuORF;ENST00000478160.1_1_3:160945095-160953023:+|nuORF	ENSG00000169251|ENST00000351193|NMD3	ENSG00000169251|ENST00000351193|NMD3	MULTI-MATCH	A375_MHC_IP_R2	2		2	591.842082	1181.66961	-0.55591	-0.00032901	-0.14024	-8.2999E-05	-0.69615	-0.00041201	591.8418220951605	102.97	0.2555	103.74	103.53	103.79	0.76428	-0.0048632	-0.00011217	NaN	21.537	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1214400			63467	7396	46320	46680							0.08604328859769339
YLERKKVQQLP	11	Unmodified	_YLERKKVQQLP_					0	0	0		nc|ENSG00000146285|Q8N228-2|SCML4;ENSG00000146285|ENST00000369020|SCML4;ENST00000473515.5_1_6:108067761-108070999:-|nuORF;nc|ENSG00000146285|Q8N228-3|SCML4	nc|ENSG00000146285|Q8N228-2|SCML4	nc|ENSG00000146285|Q8N228-2|SCML4	MULTI-SECPEP	A375_MHC_IP_R1	1	467.66595458984375	3	467.945271	1400.81398	-0.65677	-0.00030733	-0.54907	-0.00025693	-1.2058	-0.00056427	468.27954739094116	143.03	0.9599	143.03	142.38	143.34	0					39	18	4	0	0	0	1.0013	1	54722	54722		1.0136	0.60531	1	3860100			63468	5614	46321	46681	61831	61831					0.12960970339759115
YLERTTSVI	9	Unmodified	_YLERTTSVI_					0	0	0			REV__ENSG00000132182|ENST00000254508|NUP210	REV__ENSG00000132182|ENST00000254508|NUP210	MSMS	A375_MHC_IP_R2	2	541.2019653320312	2	541.298039	1080.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.97	1	133.14	132.64	133.64	0.16487								0	0	0	0.15486	1	52312	52312		13.508	0	1		+		63469	18639	46322	46682	61832	61832					0.04445708269122406
YLESHRKR	8	Unmodified	_YLESHRKR_					0	0	0			REV__nc|ENSG00000121753|O60241-4|ADGRB2	REV__nc|ENSG00000121753|O60241-4|ADGRB2	MULTI-SECPEP	A375_MHC_IP_R2	2	545.1808471679688	2	544.801614	1087.58868	-0.62017	-0.00033787	-0.75932	-0.00041368	-1.3795	-0.00075154	545.3022576118047	94.199	0.60812	94.944	94.463	95.071	0.74474					13	11	2	0	0	0	0.8957	1	35736	35736		28.487	6.9499	1	874830	+		63470	18171	46323	46683	61833	61833					0.04838485660229708
YLETAIFSQN	10	Unmodified	_YLETAIFSQN_					0	0	0		tr|U7SUI5|U7SUI5_FUSNUTIGR01212familyradicalSAMproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01174PE=4SV=1	tr|U7SUI5|U7SUI5_FUSNUTIGR01212familyradicalSAMproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01174PE=4SV=1	tr|U7SUI5|U7SUI5_FUSNUTIGR01212familyradicalSAMproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01174PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	592.603759765625	2	593.292953	1184.57135	-0.6303	-0.00037395	0.56739	0.00033663	-0.062916	-3.7327E-05	593.7949826276395	97.906	0.15368	98.662	98.585	98.739	0.75586					4	2	2	0	0	0	0.92957	1	37167	37167		3.2813	0	1	501280			63471	29770	46324	46684	61834	61834					-0.013548994561006111
YLETKLYEM	9	Unmodified	_YLETKLYEM_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	A375_MHC_IP_R2	2	1190.5103759765625	1	1189.58094	1188.57366	0.34025	0.00040475	-2.3543	-0.0028006	-2.014	-0.0023958	1189.578549185023	110.36	0.30703	111.1	110.99	111.29	0.73692					6	5	2	0	0	0	0.72985	1	41634	41634		4.3292	0.38484	1	1425500			63472	1791	46325	46685	61835	61835					-0.013081870426503883
YLEWPMDE	8	Unmodified	_YLEWPMDE_					0	0	0		ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	MULTI-MSMS	A375_MHC_IP_R1	1	542.1277465820312	2	541.7286	1081.44265	-0.15929	-8.6291E-05	-2.556	-0.0013847	-2.7153	-0.001471	541.7277514852723	113.32	0.5077	113.32	113.09	113.6	0					18	9	2	0	0	0	0.72761	2	41541	41516;41541		26.341	1.6674	1	2145900			63473	4884	46326	46686	61836;61837	61837					-0.09481577690689846
YLEWPMDE	8	Unmodified	_YLEWPMDE_					0	0	0		ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	MULTI-MATCH	A375_MHC_IP_R2	2		2	541.7286	1081.44265	-0.62196	-0.00033693	-2.1863	-0.0011844	-2.8082	-0.0015213	541.7281844749798	112.58	0.45816	113.31	113.02	113.48	0.72459	-0.0051353	0.00034364	NaN	26.341	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1325900			63474	4884	46326	46686							-0.09481577690689846
YLEYLPVSLG	10	Unmodified	_YLEYLPVSLG_					0	0	0		LRRIQ4|p.H409Y|1|0.21|ENSG00000188306|chr3:169830522-169830522|C/T|missense_variant	LRRIQ4|p.H409Y|1|0.21|ENSG00000188306|chr3:169830522-169830522|C/T|missense_variant	LRRIQ4|p.H409Y|1|0.21|ENSG00000188306|chr3:169830522-169830522|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	577.2924194335938	2	577.310615	1152.60668	-0.21463	-0.00012391	-0.21765	-0.00012565	-0.43228	-0.00024956	577.8124517416741	75.099	0.45665	75.837	75.721	76.178	0.73752					13	8	2	0	0	0	0.70496	1	28465	28465		10.074	3.3508	1	1510400			63475	14320	46327	46687	61838	61838					0.036477630716944986
YLFDKSKTV	9	Unmodified	_YLFDKSKTV_					0	0	0		ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	MULTI-MSMS	A375_MHC_IP_R2	2	367.93731689453125	3	367.53773	1099.59136	0.13123	4.823E-05	-0.6453	-0.00023717	-0.51407	-0.00018894	367.5373806505186	39.59	0.55834	40.364	40.118	40.676	0.77451					17	10	2	0	0	0	0.64945	1	14654	14654		11.518	1.444	1	2466600			63476	9563	46328	46688	61839	61839					0.04554896274521525
YLFDKSKTV	9	Unmodified	_YLFDKSKTV_					0	0	0		ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	MULTI-MATCH	A375_MHC_IP_R1	1		3	367.53773	1099.59136	0.35251	0.00012956	0.15142	5.5653E-05	0.50394	0.00018522	367.5376866062517	40.451	0.30499	40.451	40.254	40.559	0	0.043278	0.00011858	NaN	11.518	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1834800			63477	9563	46328	46688							0.04554896274521525
YLFDMMYY	8	Unmodified	_YLFDMMYY_					0	0	0			REV__ENST00000295404.9_1_19:50200719-50213852:+|nuORF	REV__ENST00000295404.9_1_19:50200719-50213852:+|nuORF	MSMS	A375_MHC_IP_R1	1	573.1740112304688	2	573.237747	1144.46094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.295	1	46.295	45.795	46.795	0								0	0	0	0.16876	1	16235	16235		11.114	0.29054	1		+		63478	20912	46329	46689	61840	61840					-0.1055115904032391
YLFDRNGVCL	10	Unmodified	_YLFDRNGVCL_					0	0	0		ENST00000573989.1_1_17:7834648-7835228:-|nuORF;ENSG00000170043|ENST00000303731|TRAPPC1	ENST00000573989.1_1_17:7834648-7835228:-|nuORF	ENST00000573989.1_1_17:7834648-7835228:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	600.8375854492188	2	600.297516	1198.58048	-0.28253	-0.0001696	0.68776	0.00041286	0.40523	0.00024326	600.2979477709695	97.246	0.50558	97.246	96.934	97.44	0					13	9	2	0	0	0	0.41205	1	35699	35699		33.445	10.787	1	728870			63479	7466	46330	46690	61841	61841					-0.010868293714111132
YLFEPLYHV	9	Unmodified	_YLFEPLYHV_					0	0	0		ENSG00000175264|ENST00000308064|CHST1	ENSG00000175264|ENST00000308064|CHST1	ENSG00000175264|ENST00000308064|CHST1	MULTI-SECPEP	A375_MHC_IP_R1	1	591.20556640625	2	590.8055	1179.59645	-0.09404	-5.5559E-05	-0.018774	-1.1092E-05	-0.11281	-6.6651E-05	590.8054801018559	109.18	0.50739	109.18	108.86	109.37	0					14	9	2	0	0	0	0.068175	1	40056	40056		74.396	38.352	1	2337900			63480	7945	46331	46691	61842	61842					0.01383200137138374
YLFEPLYHV	9	Unmodified	_YLFEPLYHV_					0	0	0		ENSG00000175264|ENST00000308064|CHST1	ENSG00000175264|ENST00000308064|CHST1	ENSG00000175264|ENST00000308064|CHST1	MULTI-SECPEP	A375_MHC_IP_R2	2	591.2048950195312	2	590.8055	1179.59645	-0.55578	-0.00032836	-0.26114	-0.00015428	-0.81692	-0.00048264	590.8052950578016	108.29	0.40903	109.04	108.81	109.22	0.75436					12	7	2	0	0	0	0.12259	1	40896	40896		63.563	40.414	1	2207000			63481	7945	46331	46691	61843	61843					0.01383200137138374
YLFEPVAKA	9	Unmodified	_YLFEPVAKA_					0	0	0		ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF	ENSG00000167716|ENST00000409644|WDR81	ENSG00000167716|ENST00000409644|WDR81	MULTI-MSMS	A375_MHC_IP_R2	2	519.6870727539062	2	519.286943	1036.55933	-0.74143	-0.00038502	0.078451	4.0739E-05	-0.66298	-0.00034428	519.2871244344323	66.924	0.76202	67.66	67.189	67.951	0.73631					24	10	3	0	0	0	0.2487	1	25363	25363		34.402	7.5181	1	2798700			63482	7216	46332	46692	61844	61844					0.042515285913850676
YLFERIKEL	9	Unmodified	_YLFERIKEL_					0	0	0		nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209	nc|ENSG00000146842|Q96SK2-2|TMEM209	nc|ENSG00000146842|Q96SK2-2|TMEM209	MULTI-MSMS	A375_MHC_IP_R1	1	404.6324157714844	3	404.23253	1209.67576	-0.35986	-0.00014547	0.22078	8.9248E-05	-0.13908	-5.6221E-05	404.2325904252146	78.066	0.7628	78.066	77.742	78.505	0					34	14	4	0	0	0	0.095851	1	28463	28463		51.415	11.176	1	12687000			63483	5642	46333	46693	61845	61845					0.07930847091279247
YLFERIKEL	9	Unmodified	_YLFERIKEL_					0	0	0		nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209	nc|ENSG00000146842|Q96SK2-2|TMEM209	nc|ENSG00000146842|Q96SK2-2|TMEM209	MULTI-SECPEP	A375_MHC_IP_R1	1	606.24462890625	2	605.845156	1209.67576	-0.24048	-0.0001457	-0.26517	-0.00016065	-0.50565	-0.00030635	605.8449627658229	78.093	0.71155	78.093	77.793	78.505	0					21	13	2	0	0	0	0.10412	1	28464	28464		93.938	28.703	1	7154600			63484	5642	46333	46693	61846	61846					0.07930847091279247
YLFERIKEL	9	Unmodified	_YLFERIKEL_					0	0	0		nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209	nc|ENSG00000146842|Q96SK2-2|TMEM209	nc|ENSG00000146842|Q96SK2-2|TMEM209	MULTI-MSMS	A375_MHC_IP_R2	2	404.63238525390625	3	404.23253	1209.67576	0.012138	4.9065E-06	-0.36229	-0.00014645	-0.35015	-0.00014154	404.2323109694483	77.064	0.71207	77.807	77.504	78.216	0.74294					38	13	4	0	0	0	0.13728	1	29233	29233		43.982	16.759	1	10021000			63485	5642	46333	46693	61847	61847					0.07930847091279247
YLFERIKEL	9	Unmodified	_YLFERIKEL_					0	0	0		nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209	nc|ENSG00000146842|Q96SK2-2|TMEM209	nc|ENSG00000146842|Q96SK2-2|TMEM209	MULTI-SECPEP	A375_MHC_IP_R2	2	606.2447509765625	2	605.845156	1209.67576	-0.42078	-0.00025493	-0.41542	-0.00025168	-0.83621	-0.00050661	605.8448238437802	77.005	0.55823	77.748	77.555	78.113	0.74293					25	10	3	0	0	0	0.18129	1	29240	29240		78.06	21.883	1	6926100			63486	5642	46333	46693	61848	61848					0.07930847091279247
YLFFFSNAS	9	Unmodified	_YLFFFSNAS_					0	0	0		ENST00000601530.1_1_19:49224057-49228265:-|nuORF;ENSG00000105538|ENST00000222145|RASIP1	ENST00000601530.1_1_19:49224057-49228265:-|nuORF	ENST00000601530.1_1_19:49224057-49228265:-|nuORF	MSMS	A375_MHC_IP_R2	2	548.195556640625	2	548.260925	1094.5073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.218	1	97.974	97.474	98.474	0.75586								0	0	0	0.1521	1	36902	36902		18.135	3.2967	1				63487	13874	46334	46694	61849	61849					-0.036176348223762034
YLFGPHHPSRQ	11	Unmodified	_YLFGPHHPSRQ_					0	0	0			REV__nc|ENSG00000108823|Q16586-2|SGCA	REV__nc|ENSG00000108823|Q16586-2|SGCA	MULTI-SECPEP	A375_MHC_IP_R1	1	1338.0704345703125	1	1338.67018	1337.6629	-0.10084	-0.000135	-3.7409	-0.0050078	-3.8417	-0.0051428	1338.6687971215526	119.6	0.45747	119.6	119.18	119.64	0					10	8	2	0	0	0	0.99331	1	44026	44026		8.7454	1.4562	1	20387000	+		63488	17556	46335	46695	61850	61850					0.007578287517389981
YLFGSDVVA	9	Unmodified	_YLFGSDVVA_					0	0	0		ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF	ENSG00000149923|ENST00000279387|PPP4C	ENSG00000149923|ENST00000279387|PPP4C	MULTI-MSMS	A375_MHC_IP_R2	2	971.236328125	1	970.488024	969.480748	-0.040955	-3.9747E-05	-0.33125	-0.00032147	-0.3722	-0.00036122	970.4873655653965	103.18	0.50963	103.95	103.58	104.09	0.76429					11	9	2	0	0	0	0.067501	1	39044	39044		57.471	30.588	1	1609500			63489	5832	46336	46696	61851	61851					-0.00521323713712718
YLFKGNNRW	9	Unmodified	_YLFKGNNRW_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	A375_MHC_IP_R1	1	400.2586364746094	3	399.876969	1196.60908	-0.40343	-0.00016132	-1.2476	-0.00049887	-1.651	-0.00066019	400.2102856185354	46.919	0.81953	46.919	46.647	47.467	0					21	15	2	0	0	0	0.41879	3	16523	16523;16532;16563		23.79	14.026	1	4259700			63490	5230	46337	46697	61852;61853;61854	61852					0.01863656320051632
YLFKGNNRW	9	Unmodified	_YLFKGNNRW_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	A375_MHC_IP_R2	2	400.2769470214844	3	399.876969	1196.60908	0.0028519	1.1404E-06	-0.75293	-0.00030108	-0.75008	-0.00029994	399.8770722321951	46.051	1.0624	46.816	46.353	47.416	0.76519					31	20	2	0	0	0	0.29123	2	17215	17215;17251		31.268	16.311	1	4270600			63491	5230	46337	46697	61855;61856	61855					0.01863656320051632
YLFLEYCS	8	Unmodified	_YLFLEYCS_					0	0	0		ENSG00000149554|ENST00000438015|CHEK1;nc|ENSG00000149554|O14757-3|CHEK1	ENSG00000149554|ENST00000438015|CHEK1	ENSG00000149554|ENST00000438015|CHEK1	MULTI-MSMS	A375_MHC_IP_R2	2	519.635498046875	2	519.236061	1036.45757	-0.88944	-0.00046183	0.4642	0.00024103	-0.42524	-0.0002208	519.2363114248707	50.176	0.86525	50.93	50.445	51.311	0.75406					29	16	2	0	0	0	0.77624	1	18841	18841		8.5933	2.2392	1	4988100			63492	5814	46338	46698	61857	61857					-0.05920085822708643
YLFLEYCS	8	Unmodified	_YLFLEYCS_					0	0	0		ENSG00000149554|ENST00000438015|CHEK1;nc|ENSG00000149554|O14757-3|CHEK1	ENSG00000149554|ENST00000438015|CHEK1	ENSG00000149554|ENST00000438015|CHEK1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	519.236061	1036.45757	-0.88944	-0.00046183	0.4642	0.00024103	-0.42524	-0.0002208	519.2363114248707	50.176	0.86525	50.93	50.445	51.311	0.75406	-0.0050764	6.9632E-05	NaN	8.5933	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4988100			63493	5814	46338	46698							-0.05920085822708643
YLFPELEL	8	Unmodified	_YLFPELEL_					0	0	0			REV__BVES|p.S241L|1|0.23|ENSG00000112276|chr6:105116795-105116795|G/A|missense_variant	REV__BVES|p.S241L|1|0.23|ENSG00000112276|chr6:105116795-105116795|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	512.1975708007812	2	512.273501	1022.53245	-0.78527	-0.00040227	-0.19237	-9.8548E-05	-0.97764	-0.00050082	512.2732029967606	64.933	0.50649	65.672	65.461	65.968	0.73811					14	9	3	0	0	0	0.85124	1	24602	24602		26.341	3.605	1	1185800	+		63494	15538	46339	46699	61858	61858					0.02208419980195231
YLFPGIPEL	9	Unmodified	_YLFPGIPEL_					0	0	0		nc|ENSG00000160688|Q8NFF5-4|FLAD1;nc|ENSG00000160688|Q8NFF5-5|FLAD1;nc|ENSG00000160688|Q8NFF5-3|FLAD1;nc|ENSG00000160688|Q8NFF5-2|FLAD1;ENSG00000160688|ENST00000292180|FLAD1	nc|ENSG00000160688|Q8NFF5-4|FLAD1	nc|ENSG00000160688|Q8NFF5-4|FLAD1	MULTI-SECPEP	A375_MHC_IP_R2	2	525.1887817382812	2	524.789318	1047.56408	-0.44447	-0.00023326	-0.77486	-0.00040664	-1.2193	-0.00063989	524.7890231399571	132.9	0.25436	133.07	132.89	133.15	0.16487					10	4	3	0	0	0	0.20094	1	52311	52311		53.576	21.459	1	5329000			63495	6432	46340	46700	61859	61859					0.04220412734139245
YLFPLKIF	8	Unmodified	_YLFPLKIF_					0	0	0			REV__nc|ENSG00000140937|P55287-2|CDH11	REV__nc|ENSG00000140937|P55287-2|CDH11	MULTI-SECPEP	A375_MHC_IP_R2	2	521.2127075195312	2	520.812596	1039.61064	-0.46761	-0.00024354	0.70063	0.0003649	0.23302	0.00012136	520.8129311573508	136.42	0.41064	136.53	136.4	136.81	0.11134					13	7	3	0	0	0	0.972	1	53610	53610		0.79363	0.10326	1	1942800	+		63496	27264	46341	46701	61860	61860					0.0924189735605978
YLFREPATI	9	Unmodified	_YLFREPATI_					0	0	0		ENST00000532399.1_1_11:67800486-67800891:+|nuORF;ENSG00000110717|ENST00000313468|NDUFS8	ENST00000532399.1_1_11:67800486-67800891:+|nuORF	ENST00000532399.1_1_11:67800486-67800891:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	555.70263671875	2	555.303124	1108.5917	-0.64214	-0.00035658	1.1323	0.00062875	0.49012	0.00027217	555.3032213240609	76.692	0.50886	76.692	76.421	76.93	0					12	9	2	0	0	0	0.1952	1	27985	27985		49.554	7.7147	1	2767600			63497	2943	46342	46702	61861	61861					0.04174315994373501
YLFRSEQI	8	Unmodified	_YLFRSEQI_					0	0	0			REV__nc|ENSG00000111358|Q13889-2|GTF2H3	REV__nc|ENSG00000111358|Q13889-2|GTF2H3	MSMS	A375_MHC_IP_R1	1	527.9152221679688	2	528.279649	1054.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.863	1	55.863	55.363	56.363	0								0	0	0	0.16876	1	19996	19996		14.582	0	1		+		63498	17668	46343	46703	61862	61862					0.0196545644323578
YLFRVYEY	8	Unmodified	_YLFRVYEY_					0	0	0			REV__tr|U7SXX4|U7SXX4_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00916PE=3SV=1	REV__tr|U7SXX4|U7SXX4_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00916PE=3SV=1	MSMS	A375_MHC_IP_R1	1	576.6896362304688	2	576.78985	1151.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.822	1	82.822	82.322	83.322	0								0	0	0	0.16876	1	30293	30293		23.148	2.2772	1		+		63499	28622	46344	46704	61863	61863					-0.004573728969489821
YLFRYQEETQV	11	Unmodified	_YLFRYQEETQV_					0	0	0			REV__nc|ENSG00000072135|Q99952-2|PTPN18	REV__nc|ENSG00000072135|Q99952-2|PTPN18	MSMS	A375_MHC_IP_R1	1	492.4775085449219	3	492.577025	1474.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.695	1	40.695	40.195	41.195	0								0	0	0	0.1624	1	14001	14001		2.8433	0.59056	1		+		63500	16599	46345	46705	61864	61864					-0.009121959275034897
YLFRYQEETQV	11	Unmodified	_YLFRYQEETQV_					0	0	0			REV__nc|ENSG00000072135|Q99952-2|PTPN18	REV__nc|ENSG00000072135|Q99952-2|PTPN18	MSMS	A375_MHC_IP_R2	2	492.6373291015625	3	492.577025	1474.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.943	1	40.718	40.218	41.218	0.77451								0	0	0	0.1624	1	14770	14770		2.8433	1.5136	1		+		63501	16599	46345	46705	61865	61865					-0.009121959275034897
YLFSERTQICI	11	Unmodified	_YLFSERTQICI_					0	0	0			REV__ENST00000345317.6_1_7:26706920-26707058:-|nuORF	REV__ENST00000345317.6_1_7:26706920-26707058:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	458.6257019042969	3	458.235834	1371.68567	-0.32575	-0.00014927	-0.17398	-7.9724E-05	-0.49973	-0.00022899	458.23579598235426	41.856	0.56219	42.63	42.35	42.913	0.77451					24	10	4	0	0	0	0.7353	1	15470	15470		3.8459	1.2147	1	6359400	+		63502	23769	46346	46706	61866	61866					0.014696670343710139
YLFSKLGENW	10	Unmodified	_YLFSKLGENW_					0	0	0		tr|U7SUW6|U7SUW6_FUSNUPrecorrin-6yC5,15-methyltransferase(Decarboxylating),CbiEsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01032PE=4SV=1	tr|U7SUW6|U7SUW6_FUSNUPrecorrin-6yC5,15-methyltransferase(Decarboxylating),CbiEsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01032PE=4SV=1	tr|U7SUW6|U7SUW6_FUSNUPrecorrin-6yC5,15-methyltransferase(Decarboxylating),CbiEsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01032PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	419.2959899902344	3	419.548518	1255.62372	-0.04349	-1.8246E-05	-0.39744	-0.00016675	-0.44093	-0.00018499	419.5483510774573	62.985	0.25386	63.727	63.534	63.788	0.74263					7	4	2	0	0	0	0.92389	1	23836	23836		6.6304	6.547	1	1273600			63503	29778	46347	46707	61867	61867					0.006136836775340271
YLFSPPPYL	9	Unmodified	_YLFSPPPYL_					0	0	0			REV__nc|ENSG00000204469|P48634-4|PRRC2A	REV__nc|ENSG00000204469|P48634-4|PRRC2A	MULTI-MSMS	A375_MHC_IP_R1	1	549.1869506835938	2	548.789318	1095.56408	-0.38494	-0.00021125	-1.0839	-0.00059486	-1.4689	-0.00080611	548.7895280811996	71.288	0.81133	71.288	70.953	71.765	0					21	15	2	0	0	0	0.1478	1	25884	25884		42.095	0.13901	1	4207100	+		63504	22517	46348	46708	61868	61868					0.02012412734143254
YLGANEQQF	9	Unmodified	_YLGANEQQF_					0	0	0			REV__CNTN4|p.D289N|1|0.6|ENSG00000144619|chr3:2887149-2887149|G/A|missense_variant	REV__CNTN4|p.D289N|1|0.6|ENSG00000144619|chr3:2887149-2887149|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	536.6551513671875	2	535.251089	1068.48762	-0.66068	-0.00035363	0.31328	0.00016768	-0.34741	-0.00018595	535.2509905829936	85.972	1.4271	86.705	86.082	87.509	0.733					78	27	5	0	0	0	0.65721	1	32603	32603		10.824	0	1	30905000	+		63505	15814	46349	46709	61869	61869					-0.043880108331450174
YLGDVSERV	9	Unmodified	_YLGDVSERV_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	A375_MHC_IP_R1	1	519.6900024414062	2	519.266739	1036.51892	-0.56363	-0.00029268	0.029115	1.5118E-05	-0.53452	-0.00027756	519.2666444565057	46.37	1.064	46.37	46.043	47.107	0					37	20	2	0	0	0	0.056914	1	16268	16268		61.602	27.2	1	32790000			63506	3768	46350	46710	61870	61870					0.002125622009543804
YLGDVSERV	9	Unmodified	_YLGDVSERV_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	A375_MHC_IP_R2	2	519.690185546875	2	519.266739	1036.51892	-0.6824	-0.00035435	-0.001962	-1.0188E-06	-0.68436	-0.00035537	519.2666375297777	45.662	1.1116	46.427	46.099	47.21	0.76519					35	21	2	0	0	0	0.64136	1	16980	16980		12.241	2.8575	1	32030000			63507	3768	46350	46710	61871	61871					0.002125622009543804
YLGEIVRNI	9	Unmodified	_YLGEIVRNI_					0	0	0		ENSG00000159399|ENST00000290573|HK2;HK2|p.L758P|1|0.19|ENSG00000159399|chr2:74887956-74887956|T/C|missense_variant;nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1	ENSG00000159399|ENST00000290573|HK2;nc|ENSG00000156515|P19367-4|HK1	ENSG00000159399|ENST00000290573|HK2	MULTI-SECPEP	A375_MHC_IP_R2	2	539.2080688476562	2	538.808574	1075.60259	-0.86715	-0.00046723	-0.027973	-1.5072E-05	-0.89512	-0.0004823	538.8084189575761	77.803	0.36029	78.546	78.315	78.676	0.74293					10	6	2	0	0	0	0.38578	1	29571	29571		34.402	19.563	1	2104500			63508	6370;6196	46351	46711	61872	61872					0.06781718368665679
YLGHLQQYV	9	Unmodified	_YLGHLQQYV_					0	0	0		nc|ENSG00000167110|Q08379|GOLGA2;ENSG00000167110|ENST00000611957|GOLGA2;nc|ENSG00000167110|Q08379-2|GOLGA2	nc|ENSG00000167110|Q08379|GOLGA2	nc|ENSG00000167110|Q08379|GOLGA2	MULTI-SECPEP	A375_MHC_IP_R1	1	561.1925048828125	2	560.792924	1119.57129	-0.55316	-0.00031021	0.94363	0.00052918	0.39047	0.00021897	560.7927207923092	64.973	0.55693	64.973	64.649	65.206	0					22	10	3	0	0	0	0.3243	1	23549	23549		44.407	12.102	1	2300900			63509	7156	46352	46712	61873	61873					0.01629145334572968
YLGLFMLCVSY	11	Unmodified	_YLGLFMLCVSY_					0	0	0		ENST00000544231.1_1_12:26348446-26405818:+|nuORF;ENSG00000123096|ENST00000242729|SSPN	ENST00000544231.1_1_12:26348446-26405818:+|nuORF	ENST00000544231.1_1_12:26348446-26405818:+|nuORF	MSMS	A375_MHC_IP_R2	2	654.9047241210938	2	654.821978	1307.6294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.77	1	105.53	105.03	106.03	0.76308								0	0	0	0.1623	1	39635	39635		6.7232	0.51738	1				63510	3824	46353	46713	61874	61874					-0.0121067712666445
YLGLVTSHTT	10	Unmodified	_YLGLVTSHTT_					0	0	0			REV__ENST00000554980.5_1_14:76425532-76432102:-|nuORF	REV__ENST00000554980.5_1_14:76425532-76432102:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	546.8349609375	2	546.290214	1090.56587	-0.71362	-0.00038984	-0.019684	-1.0753E-05	-0.7333	-0.0004006	546.2901826397	92.395	1.0613	93.134	92.585	93.646	0.73902					42	20	3	0	0	0	0.60556	1	35030	35030		20.454	5.6154	1	5888900	+		63511	18087	46354	46714	61875	61875					0.02421421752092101
YLGMLLLIL	9	Unmodified	_YLGMLLLIL_					0	0	0		ENSG00000165091|ENST00000297784|TMC1	ENSG00000165091|ENST00000297784|TMC1	ENSG00000165091|ENST00000297784|TMC1	MULTI-SECPEP	A375_MHC_IP_R1	1	525.1889038085938	2	524.827389	1047.64023	-0.73378	-0.00038511	-0.011489	-6.0297E-06	-0.74527	-0.00039114	524.8272929410754	132.77	1.2242	132.77	132.59	133.81	0					47	23	4	0	0	0	0.77244	1	51327	51327		9.3474	2.0582	1	50030000			63512	6910	46355	46715	61876	61876					0.11831093309933749
YLGMLLLIL	9	Unmodified	_YLGMLLLIL_					0	0	0		ENSG00000165091|ENST00000297784|TMC1	ENSG00000165091|ENST00000297784|TMC1	ENSG00000165091|ENST00000297784|TMC1	MULTI-SECPEP	A375_MHC_IP_R2	2	525.1887817382812	2	524.827389	1047.64023	-0.44801	-0.00023513	-0.48143	-0.00025267	-0.92944	-0.0004878	524.8270594573621	132.65	1.0148	132.82	132.64	133.65	0.16487					48	19	4	0	0	0	0.73662	1	52311	52311		14.582	5.2343	1	45683000			63513	6910	46355	46715	61877	61877					0.11831093309933749
YLGNINPQM	9	Oxidation (M)	_YLGNINPQM(Oxidation (M))_		YLGNINPQM(1)		YLGNINPQM(64)	0	0	1		ENST00000461591.5_1_3:142720470-142741912:+|nuORF;nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;U2SURP|p.N275K|1|0.41|ENSG00000163714|chr3:143021528-143021528|T/G|missense_variant	ENST00000461591.5_1_3:142720470-142741912:+|nuORF	ENST00000461591.5_1_3:142720470-142741912:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	533.705078125	2	533.255317	1064.49608	-1.3122	-0.00069975	0.068699	3.6634E-05	-1.2435	-0.00066311	533.2554219302322	53.325	0.61261	54.076	53.842	54.454	0.75105					28	11	3	0	0	0	0.050162	1	20206	20206		64.236	43.783	1	5140400			63514	6711	46356	46716	61878	61878		356			-0.03358780188182209
YLGPHIASV	9	Unmodified	_YLGPHIASV_					0	0	0		ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	MULTI-MSMS	A375_MHC_IP_R1	1	478.6944274902344	2	478.763635	955.512717	-0.50389	-0.00024125	0.14057	6.7297E-05	-0.36333	-0.00017395	478.7636247095767	58.964	1.1191	58.964	58.582	59.701	0					60	21	4	0	0	0	0.026461	3	21322	21322;21362;21374		77.984	38.027	1	60096000			63515	1333	46357	46717	61879;61880;61881	61879					0.03318088760090632
YLGPHIASV	9	Unmodified	_YLGPHIASV_					0	0	0		ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	MULTI-MSMS	A375_MHC_IP_R2	2	479.197021484375	2	478.763635	955.512717	-0.82398	-0.00039449	0.033974	1.6265E-05	-0.79001	-0.00037823	478.7635907817067	58.06	1.1148	58.809	58.477	59.592	0.74894					60	21	4	0	0	0	0.018481	1	22083	22083		85.357	49.23	1	54983000			63516	1333	46357	46717	61882	61882					0.03318088760090632
YLGQQGWQ	8	Unmodified	_YLGQQGWQ_					0	0	0			REV__ENSG00000249715|ENST00000624922|FER1L5	REV__ENSG00000249715|ENST00000624922|FER1L5	MULTI-MSMS	A375_MHC_IP_R2	2	980.305908203125	1	979.463207	978.45593	0.079512	7.7879E-05	0.43148	0.00042262	0.51099	0.0005005	979.4639187796638	133.92	0.25418	134.08	133.91	134.16	0.16487					9	4	3	0	0	0	0.77488	1	52700	52700		13.508	2.684	1	3880400	+		63517	22838	46358	46718	61883	61883					-0.03415958796426821
YLGQQGWQ	8	Unmodified	_YLGQQGWQ_					0	0	0			REV__ENSG00000249715|ENST00000624922|FER1L5	REV__ENSG00000249715|ENST00000624922|FER1L5	MULTI-MATCH	A375_MHC_IP_R1	1		1	979.463207	978.45593	-0.11311	-0.00011079	0.57643	0.00056459	0.46331	0.0004538	979.4641021103087	134.03	0.25586	134.03	133.86	134.12	0	-0.027591	4.2345E-05	NaN	13.508	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3503100	+		63518	22838	46358	46718							-0.03415958796426821
YLGQQGWQ	8	Unmodified	_YLGQQGWQ_					0	0	0			REV__ENSG00000249715|ENST00000624922|FER1L5	REV__ENSG00000249715|ENST00000624922|FER1L5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		1	979.463207	978.45593	0.079512	7.7879E-05	0.43148	0.00042262	0.51099	0.0005005	979.4639187796638	133.92	0.25418	134.08	133.91	134.16	0.16487	0.027591	-9.9623E-05	NaN	13.508	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3880400	+		63519	22838	46358	46718							-0.03415958796426821
YLGQVTTI	8	Unmodified	_YLGQVTTI_					0	0	0		nc|ENSG00000126261|Q9UBT2-2|UBA2;ENSG00000126261|ENST00000246548|UBA2	nc|ENSG00000126261|Q9UBT2-2|UBA2	nc|ENSG00000126261|Q9UBT2-2|UBA2	MULTI-SECPEP	A375_MHC_IP_R1	1	448.15008544921875	2	447.750193	893.485833	0.032528	1.4565E-05	1.6136	0.00072248	1.6461	0.00073704	447.7499672420396	78.429	2.0859	78.429	77.742	79.828	0					50	40	2	0	0	0	0.85124	1	28562	28562		34.187	7.8461	1	2467400			63520	4036	46359	46719	61884	61884					0.03482980148908155
YLGQVTTI	8	Unmodified	_YLGQVTTI_					0	0	0		nc|ENSG00000126261|Q9UBT2-2|UBA2;ENSG00000126261|ENST00000246548|UBA2	nc|ENSG00000126261|Q9UBT2-2|UBA2	nc|ENSG00000126261|Q9UBT2-2|UBA2	MULTI-MSMS	A375_MHC_IP_R2	2	895.8404541015625	1	894.49311	893.485833	-0.46206	-0.00041331	0.08609	7.7007E-05	-0.37597	-0.0003363	894.4931264725836	77.499	1.2248	78.241	77.908	79.132	0.74293					60	23	4	0	0	0	0.57209	1	29532	29532		46.021	11.919	1	63351000			63521	4036	46359	46719	61885	61885					0.03482980148908155
YLGQVTTI	8	Unmodified	_YLGQVTTI_					0	0	0		nc|ENSG00000126261|Q9UBT2-2|UBA2;ENSG00000126261|ENST00000246548|UBA2	nc|ENSG00000126261|Q9UBT2-2|UBA2	nc|ENSG00000126261|Q9UBT2-2|UBA2	MULTI-MATCH	A375_MHC_IP_R1	1		1	894.49311	893.485833	-0.055717	-4.9838E-05	-0.33703	-0.00030147	-0.39275	-0.00035131	894.4927417567076	78.347	1.3187	78.347	77.998	79.316	0	0.052822	-0.0001635	NaN	46.021	58	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49240000			63522	4036	46359	46719							0.03482980148908155
YLGRLAHEV	9	Unmodified	_YLGRLAHEV_					0	0	0		ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENSG00000142541|ENST00000391857|RPL13A	ENST00000425147.1_1_21:26734448-26734742:+|nuORF	ENST00000425147.1_1_21:26734448-26734742:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	529.693115234375	2	529.293091	1056.57163	-0.35639	-0.00018863	-0.27137	-0.00014363	-0.62776	-0.00033227	529.2930545405488	37.372	0.45993	37.372	37.198	37.658	0					11	8	2	0	0	0	0.02114	1	12602	12602		82.529	38.122	1	9376800			63523	5312	46360	46720	61886	61886					0.045605650544075615
YLGRLAHEV	9	Unmodified	_YLGRLAHEV_					0	0	0		ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENSG00000142541|ENST00000391857|RPL13A	ENST00000425147.1_1_21:26734448-26734742:+|nuORF	ENST00000425147.1_1_21:26734448-26734742:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	353.5976867675781	3	353.197819	1056.57163	0.10746	3.7955E-05	-0.14299	-5.0503E-05	-0.035526	-1.2548E-05	353.19775832212304	37.376	0.66409	37.376	37.148	37.812	0					17	12	2	0	0	0	0.059859	1	12577	12577		74.2	42.931	1	27823000			63524	5312	46360	46720	61887	61887					0.045605650544075615
YLGRLAHEV	9	Unmodified	_YLGRLAHEV_					0	0	0		ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENSG00000142541|ENST00000391857|RPL13A	ENST00000425147.1_1_21:26734448-26734742:+|nuORF	ENST00000425147.1_1_21:26734448-26734742:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	353.5976867675781	3	353.197819	1056.57163	-0.4127	-0.00014577	-0.083069	-2.934E-05	-0.49577	-0.00017511	353.19777888032314	36.341	0.91657	37.111	36.749	37.665	0.7709					29	17	3	0	0	0	0.0092471	1	13203	13203		93.938	57.432	1	27539000			63525	5312	46360	46720	61888	61888					0.045605650544075615
YLGRLAHEV	9	Unmodified	_YLGRLAHEV_					0	0	0		ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENSG00000142541|ENST00000391857|RPL13A	ENST00000425147.1_1_21:26734448-26734742:+|nuORF	ENST00000425147.1_1_21:26734448-26734742:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	529.6927490234375	2	529.293091	1056.57163	-0.73781	-0.00039052	-0.14434	-7.6397E-05	-0.88215	-0.00046691	529.2929950873581	36.295	0.4577	37.065	36.901	37.359	0.7709					12	8	2	0	0	0	0.13208	1	13233	13233		66.457	30.412	1	9393500			63526	5312	46360	46720	61889	61889					0.045605650544075615
YLGSFKLMPD	10	Unmodified	_YLGSFKLMPD_					0	0	0			REV__ENSG00000078142|ENST00000262039|PIK3C3	REV__ENSG00000078142|ENST00000262039|PIK3C3	MULTI-SECPEP	A375_MHC_IP_R1	1	1170.98046875	1	1170.58636	1169.57908	-0.45369	-0.00053109	-1.6652	-0.0019492	-2.1189	-0.0024803	1170.5844155806356	122.35	0.75998	122.35	121.72	122.48	0					17	14	2	0	0	0	0.93615	1	45485	45485		7.2892	1.0834	1	40039000	+		63527	16705	46361	46721	61890	61890					0.0010753653984920675
YLGTGRRVIY	10	Unmodified	_YLGTGRRVIY_					0	0	0		ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	MULTI-SECPEP	A375_MHC_IP_R1	1	400.29583740234375	3	399.89614	1196.66659	-0.72312	-0.00028917	0.76789	0.00030708	0.044774	1.7905E-05	399.896232908181	29.277	0.25363	29.277	29.149	29.403	0					7	4	2	0	0	0	0.91932	1	9180	9180		15.739	1.3332	1	3408700			63528	5791	46362	46722	61891	61891					0.07612498525622868
YLGTGRRVIY	10	Unmodified	_YLGTGRRVIY_					0	0	0		ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	MULTI-MATCH	A375_MHC_IP_R2	2		3	399.89614	1196.66659	-0.55454	-0.00022176	0.058937	2.3569E-05	-0.4956	-0.00019819	399.89618092499757	28.548	0.25326	29.242	29.026	29.279	0.69406	-0.017309	-0.00013091	NaN	15.739	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10361000			63529	5791	46362	46722							0.07612498525622868
YLGVKMCYF	9	Unmodified	_YLGVKMCYF_					0	0	0		ENST00000444188.1_1_6:169613405-169614351:+|nuORF	ENST00000444188.1_1_6:169613405-169614351:+|nuORF	ENST00000444188.1_1_6:169613405-169614351:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	562.6713256835938	2	562.269381	1122.52421	-0.43852	-0.00024657	3.4147	0.00192	2.9762	0.0016734	562.2715699617909	63.807	0.61282	63.807	63.477	64.09	0					20	11	3	0	0	0	0.60012	1	23134	23134		18.135	3.5533	1	1601900			63530	12014	46363	46723	61892	61892					-0.03215173532453264
YLGVKMCYF	9	Unmodified	_YLGVKMCYF_					0	0	0		ENST00000444188.1_1_6:169613405-169614351:+|nuORF	ENST00000444188.1_1_6:169613405-169614351:+|nuORF	ENST00000444188.1_1_6:169613405-169614351:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	562.269381	1122.52421	-0.53127	-0.00029872	2.2238	0.0012504	1.6925	0.00095165	562.2709606359921	63.086	0.6063	63.829	63.434	64.04	0.74263	0.010863	-0.00089301	NaN	18.135	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2186800			63531	12014	46363	46723							-0.03215173532453264
YLGYRTQLL	9	Unmodified	_YLGYRTQLL_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MULTI-SECPEP	A375_MHC_IP_R2	2	563.704833984375	2	563.816399	1125.61824	-0.42646	-0.00024045	0.63603	0.0003586	0.20957	0.00011816	564.3184573500102	88.898	0.8567	89.63	89.178	90.035	0.7318					30	16	3	0	0	0	0.50484	1	33954	33954		37.974	5.6685	1	1513900	+		63532	17912	46364	46724	61893	61893					0.06046004885729417
YLHDFLKYL	9	Unmodified	_YLHDFLKYL_					0	0	0		ENSG00000123562|ENST00000441076|MORF4L2;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	ENSG00000123562|ENST00000441076|MORF4L2;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-SECPEP	A375_MHC_IP_R1	1	606.7263793945312	2	606.326599	1210.63865	-0.26231	-0.00015905	0.34664	0.00021017	0.084325	5.1129E-05	606.3267529461207	104.97	0.60809	104.97	104.54	105.15	0					15	11	2	0	0	0	0.56023	1	38548	38548		41.956	16.556	1	2406400			63533	3854;8692;12043	46365	46725	61894	61894					0.041751755455152306
YLHDFLKYL	9	Unmodified	_YLHDFLKYL_					0	0	0		ENSG00000123562|ENST00000441076|MORF4L2;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	ENSG00000123562|ENST00000441076|MORF4L2;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	A375_MHC_IP_R2	2	404.9533996582031	3	404.553492	1210.63865	0.05854	2.3683E-05	0.074674	3.0209E-05	0.13321	5.3892E-05	404.5534601728473	103.97	0.91504	104.73	104.4	105.31	0.76419					44	17	4	0	0	0	0.095445	1	39324	39324		51.488	30.907	1	6012500			63534	3854;8692;12043	46365	46725	61895	61895					0.041751755455152306
YLHDFLKYL	9	Unmodified	_YLHDFLKYL_					0	0	0		ENSG00000123562|ENST00000441076|MORF4L2;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	ENSG00000123562|ENST00000441076|MORF4L2;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	A375_MHC_IP_R2	2	606.7264404296875	2	606.326599	1210.63865	-0.36619	-0.00022203	-0.10264	-6.2231E-05	-0.46883	-0.00028426	606.326249777399	103.94	0.4546	104.7	104.5	104.95	0.76428					18	8	3	0	0	0	0.074562	1	39370	39370		51.63	33.483	1	1879600			63535	3854;8692;12043	46365	46725	61896	61896					0.041751755455152306
YLHDQNPDAAL	11	Unmodified	_YLHDQNPDAAL_					0	0	0		ENST00000597026.5_1_19:19017767-19023834:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;ENSG00000105669|ENST00000262812|COPE	ENST00000597026.5_1_19:19017767-19023834:-|nuORF	ENST00000597026.5_1_19:19017767-19023834:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	629.1982421875	2	628.798934	1255.58332	-0.96342	-0.0006058	-2.5333	-0.0015929	-3.4967	-0.0021987	628.7971424070753	41.511	0.61437	41.511	41.266	41.88	0					32	11	4	0	0	0	0.0029745	1	14315	14315		96.936	49.341	1	6126900			63536	2627	46366	46726	61897	61897					-0.0342528271289666
YLHDQNPDAAL	11	Unmodified	_YLHDQNPDAAL_					0	0	0		ENST00000597026.5_1_19:19017767-19023834:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;ENSG00000105669|ENST00000262812|COPE	ENST00000597026.5_1_19:19017767-19023834:-|nuORF	ENST00000597026.5_1_19:19017767-19023834:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	629.1986083984375	2	628.798934	1255.58332	-1.0227	-0.0006431	-2.3761	-0.0014941	-3.3988	-0.0021372	628.797420981029	40.752	0.66214	41.526	41.335	41.997	0.77451					29	12	3	0	0	0	0.00076059	1	15103	15103		107.1	66.86	1	8679900			63537	2627	46366	46726	61898	61898					-0.0342528271289666
YLHHWIWLREL	11	Unmodified	_YLHHWIWLREL_					0	0	0			REV__CHSY3|p.T772Dfs*18|1|0.4|ENSG00000198108|chr5:130185448-130185449|-/A|frameshift_variant	REV__CHSY3|p.T772Dfs*18|1|0.4|ENSG00000198108|chr5:130185448-130185449|-/A|frameshift_variant	MSMS	A375_MHC_IP_R2	2	783.460205078125	2	783.422428	1564.8303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.22	1	123.59	123.09	124.09	0.3766								0	0	0	0.16331	1	47308	47308		1.4819	0	1		+		63538	15790	46367	46727	61899	61899					0.07048096296489348
YLHLQVESA	9	Unmodified	_YLHLQVESA_					0	0	0			REV__nc|ENSG00000054179|Q9Y5L3-3|ENTPD2	REV__nc|ENSG00000054179|Q9Y5L3-3|ENTPD2	MULTI-MSMS	A375_MHC_IP_R1	1	529.6876220703125	2	530.277106	1058.53966	-0.67292	-0.00035684	0.37131	0.0001969	-0.30162	-0.00015994	530.2774016335981	65.279	0.50795	65.279	64.954	65.462	0					17	9	2	0	0	0	0.38603	1	23568	23568		25.399	5.9603	1	3945400	+		63539	16401	46368	46728	61900	61900					0.01273152580643
YLHNQGIGV	9	Unmodified	_YLHNQGIGV_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-SECPEP	A375_MHC_IP_R1	1	501.1641845703125	2	500.764166	999.513779	-0.61252	-0.00030673	0.42339	0.00021202	-0.18913	-9.471E-05	500.76432808452375	39.643	0.35431	39.643	39.491	39.845	0					13	6	3	0	0	0	0.16229	1	13610	13610		57.471	41.624	1	4175800			63540	6220	46369	46729	61901	61901					0.014003031290144463
YLHNQGIGV	9	Unmodified	_YLHNQGIGV_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-MSMS	A375_MHC_IP_R2	2	501.1637878417969	2	500.764166	999.513779	-0.86589	-0.00043361	-0.18868	-9.4483E-05	-1.0546	-0.00052809	500.76403052938446	38.792	0.45933	39.566	39.3	39.76	0.77451					12	8	2	0	0	0	0.03497	1	14322	14322		70.716	34.589	1	4280900			63541	6220	46369	46729	61902	61902					0.014003031290144463
YLHRNRVIH	9	Unmodified	_YLHRNRVIH_					0	0	0		ENSG00000166851|ENST00000300093|PLK1;ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENSG00000166851|ENST00000300093|PLK1	ENSG00000166851|ENST00000300093|PLK1	MSMS	A375_MHC_IP_R1	1	403.6328125	3	403.231746	1206.67341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.971	1	16.971	16.471	17.471	0								0	0	0	0.15486	1	3971	3971		0.23584	0	1				63542	7119	46370	46730	61903	61903					0.07833856196839406
YLHSGQVAL	9	Unmodified	_YLHSGQVAL_					0	0	0		ENST00000544275.1_1_16:19659174-19663786:+|nuORF;nc|ENSG00000103544|Q7Z3J2-2|VPS35L;ENSG00000103544|ENST00000417362|VPS35L	ENST00000544275.1_1_16:19659174-19663786:+|nuORF	ENST00000544275.1_1_16:19659174-19663786:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	494.6664123535156	2	494.266542	986.51853	0.21948	0.00010848	-0.43759	-0.00021629	-0.21811	-0.0001078	494.2661988040549	44.946	0.65937	44.946	44.575	45.234	0					32	12	4	0	0	0	0.39388	1	15667	15667		25.399	18.11	1	14313000			63543	2461	46371	46731	61904	61904					0.024731872717552505
YLHSQVVSV	9	Unmodified	_YLHSQVVSV_					0	0	0		nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	MULTI-MSMS	A375_MHC_IP_R1	1	516.6798706054688	2	516.279649	1030.54475	-0.29624	-0.00015295	0.24857	0.00012833	-0.047678	-2.4615E-05	516.2798508720774	45.544	0.91107	45.544	45.132	46.043	0					32	17	3	0	0	0	0.033557	1	15934	15934		71.922	24.174	1	8684100			63544	9421	46372	46732	61905	61905					0.030694564432451443
YLHSQVVSV	9	Unmodified	_YLHSQVVSV_					0	0	0		nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	MULTI-MSMS	A375_MHC_IP_R2	2	516.67919921875	2	516.279649	1030.54475	-0.89057	-0.00045978	0.47981	0.00024772	-0.41076	-0.00021207	516.2799480275299	44.781	1.0166	45.55	45.086	46.103	0.76909					30	19	3	0	0	0	0.04447	1	16691	16691		66.457	18.708	1	7712700			63545	9421	46372	46732	61906	61906					0.030694564432451443
YLHSYLTYI	9	Unmodified	_YLHSYLTYI_					0	0	0		nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-3|SRP68;ENST00000588736.1_1_17:74041371-74044231:-|nuORF	nc|ENSG00000167881|Q9UHB9-2|SRP68;ENST00000588736.1_1_17:74041371-74044231:-|nuORF	nc|ENSG00000167881|Q9UHB9-2|SRP68	MULTI-SECPEP	A375_MHC_IP_R1	1	587.2021484375	2	586.802957	1171.59136	-0.52165	-0.00030611	-0.79353	-0.00046565	-1.3152	-0.00077176	586.8027666514203	90.759	1.0144	90.759	90.235	91.249	0					20	12	2	0	0	0	0.24324	1	33389	33389		50.855	30.401	1	2098300			63546	7233;13768	46373	46733	61907	61907					0.012428962745161698
YLHTPMYY	8	Unmodified	_YLHTPMYY_					0	0	0		OR10G9|p.H52Y|1|0.37|ENSG00000236981|chr11:124023166-124023166|C/T|missense_variant	OR10G9|p.H52Y|1|0.37|ENSG00000236981|chr11:124023166-124023166|C/T|missense_variant	OR10G9|p.H52Y|1|0.37|ENSG00000236981|chr11:124023166-124023166|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	544.3568725585938	2	544.249503	1086.48445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.689	1	92.689	92.189	93.189	0								0	0	0	0.16876	1	34067	34067		11.114	0.93107	1				63547	15059	46374	46734	61908	61908					-0.05532977211510115
YLHTRHVTF	9	Unmodified	_YLHTRHVTF_					0	0	0			REV__ENSG00000133424|ENST00000397394|LARGE1	REV__ENSG00000133424|ENST00000397394|LARGE1	MULTI-SECPEP	A375_MHC_IP_R1	1	392.27716064453125	3	391.876969	1172.60908	0.052071	2.0405E-05	0.033666	1.3193E-05	0.085737	3.3598E-05	391.87692439324917	76.609	0.4059	76.609	76.37	76.776	0					15	7	3	0	0	0	0.67471	1	27975	27975		12.873	0	1	1535900	+		63548	18719	46375	46735	61909	61909					0.029676563200155215
YLIDLIFL	8	Unmodified	_YLIDLIFL_					0	0	0		tr|U7STM4|U7STM4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01397PE=4SV=1	tr|U7STM4|U7STM4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01397PE=4SV=1	tr|U7STM4|U7STM4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01397PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	505.2008361816406	2	505.302062	1008.58957	-0.51075	-0.00025808	-0.18272	-9.233E-05	-0.69348	-0.00035041	505.3017668031551	141.46	0.20508	141.5	141.43	141.63	0.04216					5	3	2	0	0	0	0.972	1	55359	55359		5.7604	0	1	241610			63549	29707	46376	46736	61910	61910					0.08561887256576028
YLIELIDRV	9	Unmodified	_YLIELIDRV_					0	0	0		ENSG00000151694|ENST00000310823|ADAM17;nc|ENSG00000151694|P78536-2|ADAM17	ENSG00000151694|ENST00000310823|ADAM17	ENSG00000151694|ENST00000310823|ADAM17	MULTI-MSMS	A375_MHC_IP_R2	2	567.7005004882812	2	567.331882	1132.64921	-0.16631	-9.4352E-05	-0.74699	-0.00042379	-0.9133	-0.00051814	567.331196453954	113.95	0.4488	114.66	114.38	114.83	0.70985					16	8	3	0	0	0	0.22013	1	43022	43022		36.506	8.8774	1	3599800			63550	5922	46377	46737	61911	61911					0.08819158199935373
YLIFFRRQWKR	11	Unmodified	_YLIFFRRQWKR_					0	0	0			REV__ENSG00000133030|ENST00000651222|MPRIP	REV__ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	A375_MHC_IP_R2	2	807.3644409179688	2	806.964794	1611.91504	-0.77159	-0.00062265	-0.72782	-0.00058733	-1.4994	-0.00121	806.9654502777977	134.83	0.81248	134.97	134.6	135.41	0.13901					26	15	2	0	0	0	0.73902	1	53082	53082		0.30703	0.03801	1	2009000	+		63551	18701	46378	46738	61912	61912					0.13355466833081664
YLIGKESQV	9	Unmodified	_YLIGKESQV_					0	0	0		ENSG00000152503|ENST00000513154|TRIM36;nc|ENSG00000152503|Q9NQ86|TRIM36	ENSG00000152503|ENST00000513154|TRIM36	ENSG00000152503|ENST00000513154|TRIM36	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1867065429688	2	518.787307	1035.56006	-0.48826	-0.0002533	-0.37837	-0.0001963	-0.86663	-0.0004496	518.7870025236119	42.158	0.55582	42.158	41.88	42.436	0					20	10	2	0	0	0	0.30925	1	14597	14597		41.956	0	1	6102200			63552	5970	46379	46739	61913	61913					0.04370323240414109
YLIGNSLVVF	10	Unmodified	_YLIGNSLVVF_					0	0	0			REV__ENSG00000116786|ENST00000375799|PLEKHM2	REV__ENSG00000116786|ENST00000375799|PLEKHM2	MULTI-MSMS	A375_MHC_IP_R1	1	562.8903198242188	2	562.82115	1123.62775	-0.27097	-0.00015251	-0.30851	-0.00017363	-0.57948	-0.00032614	562.8214324015075	106.32	0.46259	106.32	106.11	106.57	0					13	8	2	0	0	0	0.67901	1	39108	39108		22.736	3.4793	1	979600	+		63553	17972	46380	46740	61914	61914					0.07087773171224399
YLIGNSLVVF	10	Unmodified	_YLIGNSLVVF_					0	0	0			REV__ENSG00000116786|ENST00000375799|PLEKHM2	REV__ENSG00000116786|ENST00000375799|PLEKHM2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	562.82115	1123.62775	-0.27097	-0.00015251	-0.30851	-0.00017363	-0.57948	-0.00032614	562.8214324015075	106.32	0.46259	106.32	106.11	106.57	0	0.024083	0.00011585	NaN	22.736	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	979600	+		63554	17972	46380	46740							0.07087773171224399
YLIGNSLVVF	10	Unmodified	_YLIGNSLVVF_					0	0	0			REV__ENSG00000116786|ENST00000375799|PLEKHM2	REV__ENSG00000116786|ENST00000375799|PLEKHM2	MULTI-MATCH	A375_MHC_IP_R2	2		2	562.82115	1123.62775	-0.52725	-0.00029675	-0.48015	-0.00027024	-1.0074	-0.00056698	563.3219256267844	105.51	0.45737	106.27	106.02	106.48	0.75977	-0.024083	-7.736E-05	NaN	22.736	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	835560	+		63555	17972	46380	46740							0.07087773171224399
YLIGVHASLA	10	Unmodified	_YLIGVHASLA_					0	0	0		nc|ENSG00000205744|Q8IV53-2|DENND1C;ENSG00000205744|ENST00000381480|DENND1C;ENST00000590818.5_1_19:6475623-6475978:-|nuORF	nc|ENSG00000205744|Q8IV53-2|DENND1C	nc|ENSG00000205744|Q8IV53-2|DENND1C	MULTI-SECPEP	A375_MHC_IP_R2	2	522.5357055664062	2	522.297842	1042.58113	-0.66443	-0.00034703	1.0725	0.00056016	0.40806	0.00021313	522.7992083373875	72.735	0.25313	73.471	73.328	73.581	0.7354					5	4	2	0	0	0	0.87163	1	27586	27586		9.3831	0.63772	1	499390			63556	9525	46381	46741	61915	61915					0.06154333339964069
YLIHFPVSV	9	Unmodified	_YLIHFPVSV_					0	0	0		nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2	nc|ENSG00000151632|P52895-2|AKR1C2	nc|ENSG00000151632|P52895-2|AKR1C2	MULTI-SECPEP	A375_MHC_IP_R1	1	537.478515625	2	537.80276	1073.59097	-0.44701	-0.0002404	-2.8828	-0.0015504	-3.3298	-0.0017908	537.8010344361041	111.81	0.45787	111.81	111.62	112.08	0					12	8	2	0	0	0	0.69504	1	41024	41024		12.532	1.7076	1	1166200			63557	5916	46382	46742	61916	61916					0.057115213453243996
YLIHLLQEL	9	Unmodified	_YLIHLLQEL_					0	0	0		ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	MULTI-MSMS	A375_MHC_IP_R1	1	571.7796630859375	2	571.334424	1140.6543	-0.37557	-0.00021458	-0.36312	-0.00020747	-0.73869	-0.00042204	571.3347482198786	83.743	0.91152	83.743	83.38	84.292	0					27	17	2	0	0	0	0.68216	1	30758	30758		8.5933	1.8701	1	5314200			63558	9303	46383	46743	61917	61917					0.08959462062580315
YLIHLLQEL	9	Unmodified	_YLIHLLQEL_					0	0	0		ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	571.334424	1140.6543	-0.37557	-0.00021458	-0.36312	-0.00020747	-0.73869	-0.00042204	571.3347482198786	83.743	0.91152	83.743	83.38	84.292	0	0.19127	-0.00036576	NaN	8.5933	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5314200			63559	9303	46383	46743							0.08959462062580315
YLIIFLLYH	9	Unmodified	_YLIIFLLYH_					0	0	0		tr|U7T570|U7T570_FUSNUDUF4271domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00465PE=4SV=1	tr|U7T570|U7T570_FUSNUDUF4271domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00465PE=4SV=1	tr|U7T570|U7T570_FUSNUDUF4271domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00465PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	1195.499755859375	1	1194.69214	1193.68487	0.32321	0.00038614	0.44266	0.00052885	0.76588	0.00091499	1195.696372407626	117.12	0.25423	117.78	117.68	117.94	0.65962					6	4	2	0	0	0	0.60623	1	44314	44314		14.582	5.2343	1	5650300			63560	30014	46384	46744	61918	61918					0.09577240447629265
YLIIKYPFREH	11	Unmodified	_YLIIKYPFREH_					0	0	0		ENSG00000198829|ENST00000362032|SUCNR1	ENSG00000198829|ENST00000362032|SUCNR1	ENSG00000198829|ENST00000362032|SUCNR1	MSMS	A375_MHC_IP_R1	1	739.8515014648438	2	739.911362	1477.80817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.41	1	99.41	98.91	99.91	0								0	0	0	0.16297	1	36518	36518		3.2813	0	1				63561	9338	46385	46745	61919	61919					0.08837871828063726
YLIIVISMGLY	11	Unmodified	_YLIIVISMGLY_					0	0	0			REV__nc|ENSG00000186334|Q495N2-2|SLC36A3	REV__nc|ENSG00000186334|Q495N2-2|SLC36A3	MSMS	A375_MHC_IP_R1	1	642.904541015625	2	642.867243	1283.71993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.82	1	67.82	67.32	68.32	0								0	0	0	0.1624	1	24581	24581		6.2058	0.9089	1		+		63562	21964	46386	46746	61920	61920					0.08942115193281097
YLILEYLS	8	Unmodified	_YLILEYLS_					0	0	0		ENST00000472940.5_1_17:58003798-58008230:+|nuORF;ENST00000441215.2_1_17:20619798-20628177:+|nuORF;ENST00000577881.1_1_17:60316192-60324457:-|nuORF;ENST00000489824.1_1_17:57971183-58007752:+|nuORF;RPS6KB1-VMP1|5|fusion;nc|ENSG00000108443|P23443-4|RPS6KB1;nc|ENSG00000108443|P23443-3|RPS6KB1;RPS6KB1-VMP1|10|fusion;nc|ENSG00000108443|P23443-5|RPS6KB1;nc|ENSG00000108443|P23443-2|RPS6KB1;ENSG00000108443|ENST00000225577|RPS6KB1	ENST00000472940.5_1_17:58003798-58008230:+|nuORF	ENST00000472940.5_1_17:58003798-58008230:+|nuORF	MSMS	A375_MHC_IP_R1	1	507.18927001953125	2	507.281326	1012.5481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.36	1	132.36	131.86	132.86	0								0	0	0	0.16876	1	51038	51038		20.871	5.103	1				63563	2801	46387	46747	61921	61921					0.04232706497225536
YLILKIPLV	9	Unmodified	_YLILKIPLV_					0	0	0		ENST00000299824.5_1_20:37548082-37548337:+|nuORF	ENST00000299824.5_1_20:37548082-37548337:+|nuORF	ENST00000299824.5_1_20:37548082-37548337:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1072.4366455078125	1	1071.71763	1070.71035	-0.35907	-0.00038483	-3.2856	-0.0035213	-3.6447	-0.0039061	1071.716106362772	124.08	0.25046	124.08	123.89	124.14	0					5	4	2	0	0	0	0.75251	1	46601	46601		2.3027	0	1	13664000			63564	10530	46388	46748	61922	61922					0.1778271497003061
YLILWCFH	8	Unmodified	_YLILWCFH_					0	0	0		ENSG00000106993|ENST00000381854|CDC37L1	ENSG00000106993|ENST00000381854|CDC37L1	ENSG00000106993|ENST00000381854|CDC37L1	MULTI-SECPEP	A375_MHC_IP_R1	1	1094.675048828125	1	1094.54918	1093.54191	0.116	0.00012697	-2.2526	-0.0024656	-2.1366	-0.0023386	1094.547709074308	118.73	0.45789	118.73	118.47	118.93	0					9	7	2	0	0	0	0.95327	1	43705	43705		17.087	1.3183	1	28596000			63565	2720	46389	46749	61923	61923					-0.0011209021527065488
YLIPLLERL	9	Unmodified	_YLIPLLERL_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	A375_MHC_IP_R1	1	565.7527465820312	2	565.352617	1128.69068	0.0047569	2.6893E-06	-0.11584	-6.549E-05	-0.11108	-6.2801E-05	565.352560935902	127.29	0.65872	127.29	127.11	127.77	0					30	12	4	0	0	0	0.026372	1	48753	48753		96.111	17.383	1	107150000			63566	2933	46390	46750	61924	61924					0.13148338959263128
YLIPLLERL	9	Unmodified	_YLIPLLERL_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	A375_MHC_IP_R2	2	565.7533569335938	2	565.352617	1128.69068	-0.43933	-0.00024838	1.0301	0.00058237	0.59077	0.00033399	565.3531618048648	126.92	0.45551	127.18	127.06	127.51	0.26593					23	8	4	0	0	0	0.026372	1	49722	49722		96.111	7.1571	1	83861000			63567	2933	46390	46750	61925	61925					0.13148338959263128
YLIQHQRF	8	Unmodified	_YLIQHQRF_					0	0	0		nc|ENSG00000197951|Q9NQZ8|ZNF71;ENSG00000197951|ENST00000599599|ZNF71	nc|ENSG00000197951|Q9NQZ8|ZNF71	nc|ENSG00000197951|Q9NQZ8|ZNF71	MULTI-SECPEP	A375_MHC_IP_R2	2	553.2296752929688	2	552.801083	1103.58761	-1.3702	-0.00075742	-1.0401	-0.00057495	-2.4102	-0.0013324	552.8006918533013	53.307	0.51036	54.058	53.739	54.249	0.75105					21	9	3	0	0	0	0.97021	1	20156	20156		14.582	0	1	2501900			63568	9211	46391	46751	61926	61926					0.03996271291316589
YLIQTRDLC	9	Unmodified	_YLIQTRDLC_					0	0	0			REV__ENST00000402802.7_1_7:537064-537175:-|nuORF	REV__ENST00000402802.7_1_7:537064-537175:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	562.6713256835938	2	562.792066	1123.56958	-0.45479	-0.00025595	-0.10178	-5.7283E-05	-0.55657	-0.00031323	562.792008310335	64.127	0.40512	64.127	63.887	64.292	0					11	7	2	0	0	0	0.74651	1	23134	23134		8.5933	1.304	1	847540	+		63569	24413	46392	46752	61927	61927					0.012737682543047413
YLIQTRDLC	9	Unmodified	_YLIQTRDLC_					0	0	0			REV__ENST00000402802.7_1_7:537064-537175:-|nuORF	REV__ENST00000402802.7_1_7:537064-537175:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	562.792066	1123.56958	-0.49936	-0.00028103	-0.55513	-0.00031242	-1.0545	-0.00059346	562.7919168003737	63.34	0.25468	64.08	63.936	64.191	0.74023	-0.023592	-0.00038806	NaN	8.5933	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	872920	+		63570	24413	46392	46752							0.012737682543047413
YLIREHIIH	9	Unmodified	_YLIREHIIH_					0	0	0			REV__tr|U7SGQ2|U7SGQ2_FUSNUDNAmismatchrepairproteinMutLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutLPE=3SV=1	REV__tr|U7SGQ2|U7SGQ2_FUSNUDNAmismatchrepairproteinMutLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutLPE=3SV=1	MSMS	A375_MHC_IP_R1	1	398.6361083984375	3	398.564502	1192.67168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.892	1	23.892	23.392	24.392	0								0	0	0	0.15486	1	6655	6655		9.544	2.0669	1		+		63571	28194	46393	46753	61928	61928					0.08304802388215649
YLIRKLKR	8	Unmodified	_YLIRKLKR_					0	0	0			REV__tr|U7SP67|U7SP67_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01745PE=4SV=1	REV__tr|U7SP67|U7SP67_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01745PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	1090.720458984375	1	1089.72551	1088.71823	0.087659	9.5525E-05	-1.1964	-0.0013037	-1.1087	-0.0012082	1090.7237253765027	122.62	0.60756	123	122.82	123.43	0.3766					13	11	2	0	0	0	0.77686	1	46946	46946		6.3541	0	1	53933000	+		63572	28348	46394	46754	61929	61929					0.1774228701017364
YLIRLSIKS	9	Unmodified	_YLIRLSIKS_					0	0	0		nc|ENSG00000176040|Q7RTY8-3|TMPRSS7;nc|ENSG00000176040|Q7RTY8-2|TMPRSS7;ENSG00000176040|ENST00000452346|TMPRSS7	nc|ENSG00000176040|Q7RTY8-3|TMPRSS7	nc|ENSG00000176040|Q7RTY8-3|TMPRSS7	MULTI-SECPEP	A375_MHC_IP_R2	2	546.4173583984375	2	546.842416	1091.67028	-0.59832	-0.00032719	2.0273	0.0011086	1.429	0.00078144	547.3456513151655	149.8	0.40221	149.82	149.58	149.98	0.01825					44	31	2	0	0	0	0.81779	1	58085	58085		0.52476	0	1	185850			63573	7995	46395	46755	61930	61930					0.12811168299458586
YLIRNGSERV	10	Unmodified	_YLIRNGSERV_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MULTI-SECPEP	A375_MHC_IP_R1	1	403.28118896484375	3	402.891166	1205.65167	-0.64451	-0.00025967	1.0964	0.00044174	0.45191	0.00018207	403.225929293704	24.001	0.456	24.001	23.687	24.143	0					12	8	2	0	0	0	0.92351	1	6560	6560		8.7518	6.317	1	1994800			63574	3137	46396	46756	61931	61931					0.057070066575988676
YLISELEAA	9	Unmodified	_YLISELEAA_					0	0	0		ENSG00000119812|ENST00000238823|FAM98A;ENST00000474985.5_1_2:33809845-33813599:-|nuORF	ENSG00000119812|ENST00000238823|FAM98A	ENSG00000119812|ENST00000238823|FAM98A	MULTI-SECPEP	A375_MHC_IP_R1	1	505.16583251953125	2	504.76604	1007.51753	-0.31426	-0.00015863	-1.0853	-0.00054782	-1.3995	-0.00070644	504.7657577872692	101.96	0.50744	101.96	101.65	102.15	0					21	9	3	0	0	0	0.28418	1	37447	37447		46.921	16.696	1	2044900			63575	3625	46397	46757	61932	61932					0.01406928112191963
YLISELEAA	9	Unmodified	_YLISELEAA_					0	0	0		ENSG00000119812|ENST00000238823|FAM98A;ENST00000474985.5_1_2:33809845-33813599:-|nuORF	ENSG00000119812|ENST00000238823|FAM98A	ENSG00000119812|ENST00000238823|FAM98A	MULTI-SECPEP	A375_MHC_IP_R2	2	505.1662292480469	2	504.76604	1007.51753	-0.57335	-0.00028941	-2.8445	-0.0014358	-3.4178	-0.0017252	504.7640032621589	101.17	0.91794	101.93	101.6	102.51	0.76428					26	17	2	0	0	0	0.28418	1	38319	38319		46.921	21.522	1	1953000			63576	3625	46397	46757	61933	61933					0.01406928112191963
YLITGNLEKL	10	Unmodified	_YLITGNLEKL_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-SECPEP	A375_MHC_IP_R2	2	582.7369995117188	2	582.337164	1162.65977	-0.2675	-0.00015578	0.55811	0.00032501	0.29061	0.00016923	582.3373326313001	84.651	0.55779	85.387	85.171	85.729	0.73602					20	10	3	0	0	0	0.73104	1	32233	32233		31.268	2.1868	1	2426300			63577	3768	46398	46758	61934	61934					0.08495140854392957
YLITKSAGAL	10	Unmodified	_YLITKSAGAL_					0	0	0			REV__nc|ENSG00000137812|Q8NG31-3|KNL1	REV__nc|ENSG00000137812|Q8NG31-3|KNL1	MULTI-SECPEP	A375_MHC_IP_R1	1	519.2051391601562	2	518.8055	1035.59645	-0.68045	-0.00035302	0.23205	0.00012039	-0.4484	-0.00023263	518.8056252908403	46.82	0.56322	46.82	46.596	47.159	0					24	10	3	0	0	0	0.78945	1	16431	16431		13.906	0	1	9511100	+		63578	19035	46399	46759	61935	61935					0.08007200137149084
YLITQRITY	9	Unmodified	_YLITQRITY_					0	0	0		nc|ENSG00000139910|P51513-5|NOVA1;ENSG00000139910|ENST00000539517|NOVA1	nc|ENSG00000139910|P51513-5|NOVA1	nc|ENSG00000139910|P51513-5|NOVA1	MSMS	A375_MHC_IP_R2	2	390.9462585449219	3	390.888763	1169.64446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.022	1	21.639	21.139	22.139	0.61768								0	0	0	0.15486	1	6588	6588		10.8	0	1				63579	5116	46400	46760	61936	61936					0.06642274057185205
YLIYFIWWYYF	11	Unmodified	_YLIYFIWWYYF_					0	0	0		tr|U7SSI1|U7SSI1_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01276PE=4SV=1	tr|U7SSI1|U7SSI1_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01276PE=4SV=1	tr|U7SSI1|U7SSI1_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01276PE=4SV=1	MSMS	A375_MHC_IP_R2	2	559.6451416015625	3	559.611118	1675.81152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.881	1	91.615	91.115	92.115	0.7345								0	0	0	0.1635	1	34577	34577		0.50596	0.41111	1				63580	29636	46401	46761	61937	61937					0.0006512188208489533
YLKDLIEEV	9	Unmodified	_YLKDLIEEV_					0	0	0		ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	MULTI-SECPEP	A375_MHC_IP_R1	1	561.7084350585938	2	561.308072	1120.60159	-0.33761	-0.0001895	1.273	0.00071454	0.93539	0.00052504	561.3094899563157	93.325	0.56109	93.325	93.023	93.584	0					20	10	3	0	0	0	0.54812	1	34343	34343		24.991	5.629	1	1490400			63581	4126	46402	46762	61938	61938					0.046114592090816586
YLKDYAERY	9	Unmodified	_YLKDYAERY_					0	0	0			REV__nc|ENSG00000091656|Q86UP3|ZFHX4	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-MSMS	A375_MHC_IP_R1	1	610.7918090820312	2	610.800946	1219.58734	-0.33244	-0.00020305	-0.11172	-6.8241E-05	-0.44416	-0.00027129	610.8009292802926	73.342	0.76118	73.342	73.082	73.843	0					28	14	3	0	0	0	0.61998	1	26623	26623		13.906	0	1	4826600	+		63582	16955	46403	46763	61939	61939					-0.013671932191982705
YLKELEKQL	9	Unmodified	_YLKELEKQL_					0	0	0		ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17;ENST00000530469.1_1_11:43400830-43413141:+|nuORF	ENSG00000052841|ENST00000039989|TTC17	ENSG00000052841|ENST00000039989|TTC17	MULTI-MSMS	A375_MHC_IP_R2	2	388.6130676269531	3	388.560535	1162.65977	-0.35195	-0.00013676	1.0009	0.0003889	0.64891	0.00025214	388.5612407794914	34.637	0.55804	35.401	35.119	35.677	0.76338					15	10	2	0	0	0	0.63811	1	12609	12609		12.241	0	1	1808600			63583	1242	46404	46764	61940	61940					0.08495140854392957
YLKIKKKLV	9	Unmodified	_YLKIKKKLV_					0	0	0		tr|U7SH90|U7SH90_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02202PE=4SV=1	tr|U7SH90|U7SH90_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02202PE=4SV=1	tr|U7SH90|U7SH90_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02202PE=4SV=1	MSMS	A375_MHC_IP_R1	1	378.624755859375	3	378.265394	1131.77435	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.53	1	143.53	143.03	144.03	0								0	0	0	0.15486	1	55059	55059		0	0	1				63584	29418	46405	46765	61941	61941					0.21373495126954367
YLKIKKKLV	9	Unmodified	_YLKIKKKLV_					0	0	0		tr|U7SH90|U7SH90_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02202PE=4SV=1	tr|U7SH90|U7SH90_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02202PE=4SV=1	tr|U7SH90|U7SH90_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02202PE=4SV=1	MSMS	A375_MHC_IP_R2	2	378.6247253417969	3	378.265394	1131.77435	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.54	1	143.57	143.07	144.07	0.024414								0	0	0	0.15486	1	56095	56095		0	0	1				63585	29418	46405	46765	61942	61942					0.21373495126954367
YLKIKKKLVI	10	Unmodified	_YLKIKKKLVI_					0	0	0		tr|U7SH90|U7SH90_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02202PE=4SV=1	tr|U7SH90|U7SH90_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02202PE=4SV=1	tr|U7SH90|U7SH90_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02202PE=4SV=1	MSMS	A375_MHC_IP_R2	2	623.3838500976562	2	623.436484	1244.85842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.853	1	93.592	93.092	94.092	0.73902								0	0	0	0.15585	1	35306	35306		1.8442	1.3859	1				63586	29418	46406	46766	61943	61943					0.245780262238668
YLKKKKFVV	9	Unmodified	_YLKKKKFVV_					0	0	0		ZDBF2|p.S2254F|1|0.43|ENSG00000204186|chr2:206311289-206311289|C/T|missense_variant	ZDBF2|p.S2254F|1|0.43|ENSG00000204186|chr2:206311289-206311289|C/T|missense_variant	ZDBF2|p.S2254F|1|0.43|ENSG00000204186|chr2:206311289-206311289|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	576.90869140625	2	576.878802	1151.74305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.12	1	105.88	105.38	106.38	0.76308								0	0	0	0.15486	1	39765	39765		2.3027	0.65011	1				63587	30194	46407	46767	61944	61944					0.17324922092893758
YLKKKNMRTLW	11	Unmodified	_YLKKKNMRTLW_					0	0	0		ENSG00000242485|ENST00000344843|MRPL20;nc|ENSG00000242485|Q9BYC9-2|MRPL20	ENSG00000242485|ENST00000344843|MRPL20	ENSG00000242485|ENST00000344843|MRPL20	MULTI-MSMS	A375_MHC_IP_R2	2	494.7004699707031	3	494.286751	1479.83842	-0.4362	-0.00021561	-0.28715	-0.00014194	-0.72336	-0.00035755	494.2862709223356	132.58	1.1691	132.77	132.05	133.22	0.18953					58	22	4	0	0	0	0.73902	1	52024	52024		0.08335	0.08335	1	10260000			63588	9798	46408	46768	61945	61945					0.11769907221628273
YLKKRKFYLKK	11	Unmodified	_YLKKRKFYLKK_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	A375_MHC_IP_R2	2	758.071044921875	2	757.982121	1513.94969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.32	1	118.93	118.43	119.43	0.60909								0	0	0	0.1636	1	44909	44909		0	0	1				63589	10883	46409	46769	61946	61946					0.2132728992119155
YLKNILMGN	9	Unmodified	_YLKNILMGN_					0	0	0		ENSG00000143498|ENST00000352967|TAF1A;nc|ENSG00000143498|Q15573-2|TAF1A	ENSG00000143498|ENST00000352967|TAF1A	ENSG00000143498|ENST00000352967|TAF1A	MSMS	A375_MHC_IP_R1	1	355.6994323730469	3	355.86356	1064.56885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.113	1	18.113	17.613	18.613	0								0	0	0	0.15486	1	4297	4297		0	0	1				63590	5401	46410	46770	61947	61947					0.039149736052877415
YLKPYFLEA	9	Unmodified	_YLKPYFLEA_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35062192-35072350:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-SECPEP	A375_MHC_IP_R1	1	572.7080688476562	2	572.307875	1142.6012	-0.15354	-8.7874E-05	0.94394	0.00054022	0.7904	0.00045235	572.3077451091223	88.995	1.1178	88.995	88.561	89.679	0					45	21	3	0	0	0	0.29257	1	32690	32690		57.722	13.864	1	5869500			63591	6934	46411	46771	61948	61948					0.0356008427991128
YLKQLLNLEKR	11	Unmodified	_YLKQLLNLEKR_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-MSMS	A375_MHC_IP_R1	1	709.9608764648438	2	709.429919	1416.84528	-0.94815	-0.00067264	-0.66221	-0.00046979	-1.6104	-0.0011424	709.4293317482887	149.66	1.196	149.66	148.81	150	0					100	46	3	0	0	0	0.73934	1	57002	57002		0	0	1	145080	+		63592	18320	46412	46772	61949	61949					0.1535354337379431
YLKRALKK	8	Unmodified	_YLKRALKK_					0	0	0		OR1F1|p.G299R|1|0.56|ENSG00000168124|chr16:3205141-3205141|G/A|missense_variant	OR1F1|p.G299R|1|0.56|ENSG00000168124|chr16:3205141-3205141|G/A|missense_variant	OR1F1|p.G299R|1|0.56|ENSG00000168124|chr16:3205141-3205141|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	1020.7866821289062	1	1019.67241	1018.66514	0.055448	5.6539E-05	-2.1293	-0.0021712	-2.0739	-0.0021147	1019.6679969324798	120.4	0.15111	120.93	120.85	121	0.5321					4	2	2	0	0	0	0.77781	1	45928	45928		2.8892	0	1	10172000			63593	15064	46413	46773	61950	61950					0.15654909227498592
YLKRLESL	8	Unmodified	_YLKRLESL_					0	0	0			REV__ENST00000540613.5_1_12:15815406-15815490:-|nuORF	REV__ENST00000540613.5_1_12:15815406-15815490:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	511.458740234375	2	511.305667	1020.59678	-0.82803	-0.00042338	-0.092688	-4.7392E-05	-0.92072	-0.00047077	511.30554740360407	81.551	0.50536	82.294	82.078	82.584	0.74293					20	9	3	0	0	0	0.8824	1	31072	31072		16.942	0	1	2693500	+		63594	25952	46414	46774	61951	61951					0.08730619856999056
YLKTWDMYREI	11	Unmodified	_YLKTWDMYREI_					0	0	0		nc|ENSG00000183914|Q9P225-2|DNAH2;ENSG00000183914|ENST00000572933|DNAH2	nc|ENSG00000183914|Q9P225-2|DNAH2	nc|ENSG00000183914|Q9P225-2|DNAH2	MSMS	A375_MHC_IP_R2	2	506.6428527832031	3	506.586755	1516.73844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.55	1	81.295	80.795	81.795	0.74474								0	0	0	0.16302	1	30582	30582		1.2148	0	1				63595	8541	46415	46775	61952	61952					0.0007362509716131171
YLKVHSNLVIP	11	Unmodified	_YLKVHSNLVIP_					0	0	0		ENSG00000179941|ENST00000650064|BBS10	ENSG00000179941|ENST00000650064|BBS10	ENSG00000179941|ENST00000650064|BBS10	MULTI-SECPEP	A375_MHC_IP_R1	1	641.718505859375	2	641.87953	1281.74451	-0.43199	-0.00027729	0.76641	0.00049194	0.33442	0.00021466	642.3817887118915	88.97	0.55748	88.97	88.663	89.221	0					14	10	2	0	0	0	0.99227	1	32697	32697		5.7319	0	1	7752400			63596	8268	46416	46776	61953	61953					0.11490511390979918
YLLAPSTGLSP	11	Unmodified	_YLLAPSTGLSP_					0	0	0		ENST00000561250.1_1_15:69652443-69672410:+|nuORF	ENST00000561250.1_1_15:69652443-69672410:+|nuORF	ENST00000561250.1_1_15:69652443-69672410:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	559.2056274414062	2	559.808239	1117.60193	-0.41475	-0.00023218	-0.73026	-0.0004088	-1.145	-0.00064098	559.8077417297576	62.202	0.66585	62.202	61.943	62.609	0					18	12	2	0	0	0	0.98748	1	22554	22554		8.7454	0	1	2707800			63597	13508	46417	46777	61954	61954					0.047828789289496854
YLLCQFMSH	9	Unmodified	_YLLCQFMSH_					0	0	0			REV__chr3:126957196-126957416|343|46.18|0.04|10.3|+|2|None,CHCHD6|1	REV__chr3:126957196-126957416|343|46.18|0.04|10.3|+|2|None,CHCHD6|1	MULTI-MSMS	A375_MHC_IP_R1	1	572.2008056640625	2	571.262087	1140.50962	-0.17261	-9.8604E-05	-0.62389	-0.0003564	-0.7965	-0.00045501	571.2617455339715	62.788	0.46069	62.788	62.557	63.018	0					18	8	3	0	0	0	0.65721	1	22732	22732		10.824	10.824	1	1643300	+		63598	15748	46418	46778	61955	61955					-0.05501245680579814
YLLDERGH	8	Unmodified	_YLLDERGH_					0	0	0			REV__nc|ENSG00000106459|Q16656-3|NRF1	REV__nc|ENSG00000106459|Q16656-3|NRF1	MULTI-MSMS	A375_MHC_IP_R2	2	1003.7350463867188	1	1002.50032	1001.49304	0.12334	0.00012365	1.4449	0.0014486	1.5683	0.0015722	1002.5031349255206	117.94	0.35332	118.55	118.34	118.69	0.60909					9	6	2	0	0	0	0.77686	1	44639	44639		6.3541	0	1	18854000	+		63599	17450	46419	46779	61956	61956					-0.0076428725066080005
YLLDGVTEA	9	Unmodified	_YLLDGVTEA_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.K1434Nfs*14|1|0.29|ENSG00000153207|chr1:246855808-246855809|AC/-|frameshift_variant;ENST00000470300.5_1_1:247027247-247061635:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-SECPEP	A375_MHC_IP_R1	1	979.9241943359375	1	980.493504	979.486227	0.22382	0.00021945	-0.30123	-0.00029536	-0.077415	-7.5905E-05	980.4931904199818	88.299	0.5611	88.299	88	88.561	0					18	10	2	0	0	0	0.047455	1	32375	32375		88.904	40.558	1	3838100			63600	6016	46420	46780	61957	61957					-0.004336449219067617
YLLDGVTEA	9	Unmodified	_YLLDGVTEA_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.K1434Nfs*14|1|0.29|ENSG00000153207|chr1:246855808-246855809|AC/-|frameshift_variant;ENST00000470300.5_1_1:247027247-247061635:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MATCH	A375_MHC_IP_R2	2		1	980.493504	979.486227	0.083539	8.1909E-05	-0.5501	-0.00053937	-0.46656	-0.00045746	980.4931106713843	87.574	0.50442	88.306	88.066	88.57	0.7318	0.0034636	-0.00015349	NaN	88.904	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4521300			63601	6016	46420	46780							-0.004336449219067617
YLLDLHSYL	9	Unmodified	_YLLDLHSYL_					0	0	0		nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-5|MARCHF6	nc|ENSG00000145495|O60337-5|MARCHF6	MULTI-SECPEP	A375_MHC_IP_R1	1	569.2017211914062	2	568.802957	1135.59136	-0.41455	-0.0002358	0.50467	0.00028706	0.090113	5.1257E-05	568.8032274722491	119.55	0.65846	119.55	119.13	119.79	0					26	12	3	0	0	0	0.050875	1	44116	44116		85.357	27.885	1	53142000			63602	14662	46421	46781	61958	61958					0.028988962745188473
YLLDLHSYL	9	Unmodified	_YLLDLHSYL_					0	0	0		nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-5|MARCHF6	nc|ENSG00000145495|O60337-5|MARCHF6	MULTI-SECPEP	A375_MHC_IP_R2	2	569.2015991210938	2	568.802957	1135.59136	-0.25616	-0.00014571	0.43859	0.00024947	0.18242	0.00010376	568.8030979293572	118.62	0.65768	119.23	118.9	119.56	0.60909					27	12	3	0	0	0	0.050875	1	45021	45021		74.423	16.951	1	45962000			63603	14662	46421	46781	61959	61959					0.028988962745188473
YLLDYPNNL	9	Unmodified	_YLLDYPNNL_					0	0	0		ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-5|ANKRD17	ENSG00000132466|ENST00000358602|ANKRD17	ENSG00000132466|ENST00000358602|ANKRD17	MSMS	A375_MHC_IP_R1	1	562.7064819335938	2	562.784764	1123.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.12	1	110.12	109.62	110.62	0								0	0	0	0.15283	1	40381	40381		16.942	3.4344	1				63604	4411	46422	46782	61960	61960					-0.0018598062220007705
YLLDYPNNL	9	Unmodified	_YLLDYPNNL_					0	0	0		ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-5|ANKRD17	ENSG00000132466|ENST00000358602|ANKRD17	ENSG00000132466|ENST00000358602|ANKRD17	MULTI-MSMS	A375_MHC_IP_R2	2	562.7066040039062	2	562.784764	1123.55498	-0.4451	-0.00025049	-1.3019	-0.0007327	-1.747	-0.0009832	562.7845829410693	109.48	0.55669	110.22	110.03	110.59	0.74684					13	10	2	0	0	0	0.4867	1	41323	41323		20.454	8.8133	1	676810			63605	4411	46422	46782	61961	61961					-0.0018598062220007705
YLLEKSRAV	9	Unmodified	_YLLEKSRAV_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MULTI-SECPEP	A375_MHC_IP_R2	2	540.1747436523438	2	539.816399	1077.61824	-0.88354	-0.00047695	-0.11001	-5.9386E-05	-0.99355	-0.00053634	539.8164135955607	31.298	0.46058	32.016	31.719	32.18	0.71857					10	8	2	0	0	0	0.38134	1	11027	11027		49.554	11.58	1	3349500			63606	4474	46423	46783	61962	61962					0.0825400488570267
YLLEKSRVV	9	Unmodified	_YLLEKSRVV_					0	0	0		ENSG00000125414|ENST00000245503|MYH2;nc|ENSG00000125414|Q9UKX2-2|MYH2;MYH2|p.A358Gfs*11|1|0.44|ENSG00000125414|chr17:10540002-10540003|-/C|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;nc|ENSG00000128833|Q9NQX4-2|MYO5C;ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;ENST00000541028.5_1_15:52553308-52587917:-|nuORF;ENST00000558902.5_1_15:52548900-52571163:-|nuORF;nc|ENSG00000128641|O43795-2|MYO1B;MYO1B|p.L1009Pfs*6|1|0.14|ENSG00000128641|chr2:191414529-191414530|-/T|frameshift_variant;ENSG00000128641|ENST00000392318|MYO1B	ENSG00000125414|ENST00000245503|MYH2;ENSG00000128833|ENST00000261839|MYO5C;ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197879|O00159-2|MYO1C;ENST00000541028.5_1_15:52553308-52587917:-|nuORF;ENST00000558902.5_1_15:52548900-52571163:-|nuORF;nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-SECPEP	A375_MHC_IP_R1	1	369.9363708496094	3	369.557125	1105.64954	-0.087073	-3.2178E-05	0.13247	4.8955E-05	0.045397	1.6777E-05	369.5570991559914	41.423	0.40657	41.423	41.164	41.571	0					10	7	2	0	0	0	0.775	1	14328	14328		7.4771	0	1	826640			63607	9204;14591;3959;4166;7176;9167;13280;13476	46424	46784	61963	61963					0.10094577919812764
YLLEKSRVV	9	Unmodified	_YLLEKSRVV_					0	0	0		ENSG00000125414|ENST00000245503|MYH2;nc|ENSG00000125414|Q9UKX2-2|MYH2;MYH2|p.A358Gfs*11|1|0.44|ENSG00000125414|chr17:10540002-10540003|-/C|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;nc|ENSG00000128833|Q9NQX4-2|MYO5C;ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;ENST00000541028.5_1_15:52553308-52587917:-|nuORF;ENST00000558902.5_1_15:52548900-52571163:-|nuORF;nc|ENSG00000128641|O43795-2|MYO1B;MYO1B|p.L1009Pfs*6|1|0.14|ENSG00000128641|chr2:191414529-191414530|-/T|frameshift_variant;ENSG00000128641|ENST00000392318|MYO1B	ENSG00000125414|ENST00000245503|MYH2;ENSG00000128833|ENST00000261839|MYO5C;ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197879|O00159-2|MYO1C;ENST00000541028.5_1_15:52553308-52587917:-|nuORF;ENST00000558902.5_1_15:52548900-52571163:-|nuORF;nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-SECPEP	A375_MHC_IP_R1	1	554.200439453125	2	553.832049	1105.64954	-0.946	-0.00052393	-0.062453	-3.4589E-05	-1.0085	-0.00055851	553.8319980243645	41.445	0.35633	41.445	41.215	41.571	0					10	6	2	0	0	0	0.61758	1	14319	14319		27.223	0	1	2445500			63608	9204;14591;3959;4166;7176;9167;13280;13476	46424	46784	61964	61964					0.10094577919812764
YLLEQEVPG	9	Unmodified	_YLLEQEVPG_					0	0	0		ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	A375_MHC_IP_R2	2	1047.420654296875	1	1047.5357	1046.52843	0.038662	4.0499E-05	-0.87411	-0.00091566	-0.83545	-0.00087516	1047.5389806604196	121.66	0.15253	122.1	121.98	122.13	0.44488					4	2	2	0	0	0	0.6898	1	46502	46502		7.9102	0	1	8546800			63609	1083	46425	46785	61965	61965					0.00702330486478786
YLLEQGAQV	9	Unmodified	_YLLEQGAQV_					0	0	0		ENST00000443167.1_1_13:19239519-19239999:+|nuORF;ENST00000431297.1_1_21:15134673-15136650:+|nuORF;ENSG00000141965|ENST00000269856|FEM1A	ENST00000443167.1_1_13:19239519-19239999:+|nuORF	ENST00000443167.1_1_13:19239519-19239999:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	511.1716003417969	2	510.771657	1019.52876	-0.4506	-0.00023015	-0.029265	-1.4948E-05	-0.47986	-0.0002451	510.77156692266425	74.669	0.5588	74.669	74.4	74.958	0					26	10	3	0	0	0	0.01001	1	27189	27189		123.45	38.179	1	4009000			63610	5281	46426	46786	61966	61966					0.019777502063334396
YLLEQGAQV	9	Unmodified	_YLLEQGAQV_					0	0	0		ENST00000443167.1_1_13:19239519-19239999:+|nuORF;ENST00000431297.1_1_21:15134673-15136650:+|nuORF;ENSG00000141965|ENST00000269856|FEM1A	ENST00000443167.1_1_13:19239519-19239999:+|nuORF	ENST00000443167.1_1_13:19239519-19239999:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	511.1717529296875	2	510.771657	1019.52876	-0.73767	-0.00037678	0.63676	0.00032524	-0.10091	-5.1544E-05	510.7717558005757	73.909	0.76364	74.647	74.195	74.958	0.73751					31	14	3	0	0	0	0.011451	1	28052	28052		96.111	30.876	1	5188100			63611	5281	46426	46786	61967	61967					0.019777502063334396
YLLEQLKE	8	Unmodified	_YLLEQLKE_					0	0	0		ENSG00000164430|ENST00000370315|CGAS;nc|ENSG00000164430|Q8N884-2|CGAS	ENSG00000164430|ENST00000370315|CGAS	ENSG00000164430|ENST00000370315|CGAS	MULTI-MSMS	A375_MHC_IP_R2	2	519.4193115234375	2	518.289682	1034.56481	-0.65713	-0.00034058	-0.5886	-0.00030506	-1.2457	-0.00064565	518.2894675394357	73.367	1.1709	74.102	73.684	74.855	0.73541					53	22	4	0	0	0	0.7754	1	27889	27889		11.64	0	1	7529000			63612	6838	46427	46787	61968	61968					0.04891207383184337
YLLESGKAAET	11	Unmodified	_YLLESGKAAET_					0	0	0			REV__ARVCF|p.F655S|1|0.25|ENSG00000099889|chr22:19974236-19974236|A/G|missense_variant	REV__ARVCF|p.F655S|1|0.25|ENSG00000099889|chr22:19974236-19974236|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	591.6868286132812	2	591.306061	1180.59757	-0.47205	-0.00027913	1.0631	0.00062862	0.59106	0.0003495	591.3067495536183	65.757	0.40692	65.757	65.514	65.921	0					10	7	2	0	0	0	0.9754	1	23752	23752		8.1555	0	1	989400	+		63613	15458	46428	46788	61969	61969					0.014493697153511675
YLLFLAAIH	9	Unmodified	_YLLFLAAIH_					0	0	0			REV__nc|ENSG00000274611|Q8IZP1-2|TBC1D3	REV__nc|ENSG00000274611|Q8IZP1-2|TBC1D3	MULTI-SECPEP	A375_MHC_IP_R1	1	1061.2691650390625	1	1060.61898	1059.6117	-0.20247	-0.00021474	1.3105	0.0013899	1.108	0.0011752	1060.6212386791667	121.22	0.864	121.22	120.8	121.67	0					23	16	2	0	0	0	0.77244	1	45152	45152		5.2307	0	1	68652000	+		63614	22906	46429	46789	61970	61970					0.0842811172499296
YLLFLAAIH	9	Unmodified	_YLLFLAAIH_					0	0	0			REV__nc|ENSG00000274611|Q8IZP1-2|TBC1D3	REV__nc|ENSG00000274611|Q8IZP1-2|TBC1D3	MULTI-MSMS	A375_MHC_IP_R2	2	1060.5635986328125	1	1060.61898	1059.6117	0.1189	0.00012611	-0.76803	-0.00081458	-0.64912	-0.00068847	1060.6200577029979	119.7	0.50868	120.23	119.89	120.4	0.5321					17	9	3	0	0	0	0.71977	1	45592	45592		5.2307	0.47466	1	18260000	+		63615	22906	46429	46789	61971	61971					0.0842811172499296
YLLFLAAIH	9	Unmodified	_YLLFLAAIH_					0	0	0			REV__nc|ENSG00000274611|Q8IZP1-2|TBC1D3	REV__nc|ENSG00000274611|Q8IZP1-2|TBC1D3	MULTI-SECPEP	A375_MHC_IP_R2	2	1060.2333984375	1	1060.61898	1059.6117	0.092195	9.7784E-05	1.6869	0.0017891	1.7791	0.0018869	1061.622130283187	120.34	0.45316	120.87	120.75	121.2	0.5321					9	8	2	0	0	0	0.79683	1	45864	45864		2.3027	0	1	138030000	+		63616	22906	46429	46789	61972	61972					0.0842811172499296
YLLFTKWFLLV	11	Unmodified	_YLLFTKWFLLV_					0	0	0			REV__nc|ENSG00000086991|Q9NPH5-3|NOX4	REV__nc|ENSG00000086991|Q9NPH5-3|NOX4	MSMS	A375_MHC_IP_R1	1	481.6831359863281	3	481.619725	1441.83735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.79	1	137.79	137.29	138.29	0								0	0	0	0.1635	1	53025	53025		0.50596	0.41111	1		+		63617	15683	46430	46790	61973	61973					0.134100161243623
YLLGGWLC	8	Unmodified	_YLLGGWLC_					0	0	0			REV__ENSG00000283528|ENST00000636941|TCAF2C;REV__ENST00000392900.3_1_7:143551228-143582358:-|nuORF	REV__ENSG00000283528|ENST00000636941|TCAF2C	MULTI-MSMS	A375_MHC_IP_R2	2	926.5589599609375	1	924.464787	923.45751	-0.29679	-0.00027437	0.34186	0.00031604	0.045074	4.1669E-05	924.4656238723612	123.22	0.2525	123.59	123.48	123.73	0.3766					8	4	3	0	0	0	0.76194	1	47292	47292		17.087	5.9721	1	19504000	+		63618	20987;22370	46431	46791	61974	61974					-0.007280410320390729
YLLGHDIRI	9	Unmodified	_YLLGHDIRI_					0	0	0		ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	MULTI-MSMS	A375_MHC_IP_R1	1	367.61358642578125	3	367.213469	1098.61858	0.54206	0.00019905	-0.19495	-7.1587E-05	0.34712	0.00012747	367.2133524605505	70.04	0.50835	70.04	69.832	70.341	0					16	9	2	0	0	0	0.53943	1	25442	25442		17.863	3.645	1	3086400			63619	5946	46432	46792	61975	61975					0.07321424605561333
YLLGHDIRI	9	Unmodified	_YLLGHDIRI_					0	0	0		ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	MULTI-MSMS	A375_MHC_IP_R2	2	367.6131896972656	3	367.213469	1098.61858	0.25029	9.191E-05	-0.53551	-0.00019664	-0.28522	-0.00010474	367.2131501083465	69.25	0.55792	69.984	69.574	70.132	0.73461					16	10	3	0	0	0	0.43945	1	26238	26238		22.775	2.194	1	2558200			63620	5946	46432	46792	61976	61976					0.07321424605561333
YLLIRPQSI	9	Unmodified	_YLLIRPQSI_					0	0	0			REV__ENSG00000007202|ENST00000528896|BLTP2	REV__ENSG00000007202|ENST00000528896|BLTP2	MULTI-SECPEP	A375_MHC_IP_R1	1	552.2343139648438	2	551.834591	1101.65463	-0.42111	-0.00023239	-0.2864	-0.00015805	-0.70752	-0.00039043	551.8343930518423	88.689	0.35646	88.689	88.51	88.867	0					11	6	2	0	0	0	0.60917	1	32574	32574		19.257	4.4187	1	2709800	+		63621	16151	46433	46793	61977	61977					0.10786881782428281
YLLKGKRKV	9	Unmodified	_YLLKGKRKV_					0	0	0		ENST00000505030.5_1_5:87962937-87963072:-|nuORF	ENST00000505030.5_1_5:87962937-87963072:-|nuORF	ENST00000505030.5_1_5:87962937-87963072:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	1104.9437255859375	1	1104.72518	1103.7179	0.12008	0.00013266	1.3187	0.0014569	1.4388	0.0015895	1105.7322939955327	123.88	0.25467	124.21	124.04	124.29	0.32969					5	4	2	0	0	0	0.81122	1	47653	47653		0.6015	0	1	18193000			63622	12834	46434	46794	61978	61978					0.170188672903123
YLLKLLRKG	9	Unmodified	_YLLKLLRKG_					0	0	0		ENSG00000173575|ENST00000394196|CHD2;nc|ENSG00000173575|O14647-2|CHD2	ENSG00000173575|ENST00000394196|CHD2	ENSG00000173575|ENST00000394196|CHD2	MULTI-SECPEP	A375_MHC_IP_R2	2	1103.2235107421875	1	1103.72993	1102.72265	0.11047	0.00012193	0.59666	0.00065855	0.70713	0.00078048	1103.73185869849	123.26	0.30287	123.63	123.48	123.78	0.3766					6	5	2	0	0	0	0.79683	1	47348	47348		5.2307	0	1	12859000			63623	7811	46435	46795	61979	61979					0.1753975143308253
YLLLHWQL	8	Unmodified	_YLLLHWQL_					0	0	0		ENSG00000092931|ENST00000685175|MFSD11;nc|ENSG00000092931|O43934-2|MFSD11	ENSG00000092931|ENST00000685175|MFSD11	ENSG00000092931|ENST00000685175|MFSD11	MULTI-SECPEP	A375_MHC_IP_R1	1	544.0325317382812	2	543.310752	1084.60695	-0.54427	-0.00029571	-4.2938	-0.0023329	-4.8381	-0.0026286	543.8109424895346	96.41	0.7629	96.41	96.018	96.781	0					25	14	3	0	0	0	0.92215	1	35470	35470		15.768	1.1865	1	1168500			63624	2016	46436	46796	61980	61980					0.06803227582213367
YLLLHWQL	8	Unmodified	_YLLLHWQL_					0	0	0		ENSG00000092931|ENST00000685175|MFSD11;nc|ENSG00000092931|O43934-2|MFSD11	ENSG00000092931|ENST00000685175|MFSD11	ENSG00000092931|ENST00000685175|MFSD11	MULTI-SECPEP	A375_MHC_IP_R2	2	542.6713256835938	2	543.310752	1084.60695	-0.65829	-0.00035765	-4.2858	-0.0023285	-4.9441	-0.0026862	543.8096764099457	95.458	0.66278	96.208	95.939	96.602	0.75045					20	12	3	0	0	0	0.92215	1	36345	36345		22.453	0	1	1274000			63625	2016	46436	46796	61981	61981					0.06803227582213367
YLLLLVKKA	9	Unmodified	_YLLLLVKKA_					0	0	0		MELK|p.A322V|1|0.17|ENSG00000165304|chr9:36651789-36651789|C/T|missense_variant	MELK|p.A322V|1|0.17|ENSG00000165304|chr9:36651789-36651789|C/T|missense_variant	MELK|p.A322V|1|0.17|ENSG00000165304|chr9:36651789-36651789|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	1060.287841796875	1	1060.71288	1059.7056	-0.01369	-1.4521E-05	-1.9523	-0.0020708	-1.9659	-0.0020853	1062.7173201564137	119.93	0.45853	119.93	119.69	120.15	0					16	8	3	0	0	0	0.79683	1	44480	44480		5.2307	0	1	17713000			63626	14371	46437	46797	61982	61982					0.17813830827253696
YLLPAIVH	8	Unmodified	_YLLPAIVH_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;DDX5|p.Y425Lfs*24|1|0.13|ENSG00000108654|chr17:64500716-64500717|-/A|frameshift_variant;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5;ENST00000432525.5_1_22:38886367-38903636:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	A375_MHC_IP_R1	1	463.67913818359375	2	463.278921	924.543289	-0.09777	-4.5295E-05	-0.00069335	-3.2121E-07	-0.098464	-4.5616E-05	463.27897340893094	88.86	0.35712	88.86	88.612	88.97	0					11	6	2	0	0	0	0.41926	1	32664	32664		52.334	28.124	1	1218400			63627	2826;2131	46438	46798	61983	61983					0.07799867145126882
YLLPAIVH	8	Unmodified	_YLLPAIVH_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;DDX5|p.Y425Lfs*24|1|0.13|ENSG00000108654|chr17:64500716-64500717|-/A|frameshift_variant;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5;ENST00000432525.5_1_22:38886367-38903636:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	MULTI-SECPEP	A375_MHC_IP_R2	2	463.1813659667969	2	463.278921	924.543289	-0.48058	-0.00022264	-0.12646	-5.8585E-05	-0.60704	-0.00028123	463.27886345918745	87.914	0.45709	88.646	88.418	88.875	0.7318					13	8	2	0	0	0	0.95327	1	33371	33371		17.087	0	1	1274700			63628	2826;2131	46438	46798	61984	61984					0.07799867145126882
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;DDX5|p.Y425Lfs*24|1|0.13|ENSG00000108654|chr17:64500716-64500717|-/A|frameshift_variant;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5;ENST00000432525.5_1_22:38886367-38903636:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	A375_MHC_IP_R1	1	520.7213745117188	2	519.820953	1037.62735	-0.61799	-0.00032125	0.34024	0.00017687	-0.27775	-0.00014438	519.8210926866586	119.57	2.3314	119.57	119.18	121.52	0					108	45	5	0	0	0	0.0095977	1	44105	44105		109.15	64.747	1	2021799999.9999998			63629	2826;2131	46439	46799	61985	61985					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;DDX5|p.Y425Lfs*24|1|0.13|ENSG00000108654|chr17:64500716-64500717|-/A|frameshift_variant;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5;ENST00000432525.5_1_22:38886367-38903636:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	A375_MHC_IP_R2	2	1039.29345703125	1	1038.63463	1037.62735	0.13385	0.00013902	0.8156	0.00084711	0.94945	0.00098613	1038.6354566490197	118.62	0.70766	119.23	118.9	119.61	0.60909					35	13	4	0	0	0	0.0096211	1	44970	44970		126.6	59.187	1	220090000			63630	2826;2131	46439	46799	61986	61986					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;DDX5|p.Y425Lfs*24|1|0.13|ENSG00000108654|chr17:64500716-64500717|-/A|frameshift_variant;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5;ENST00000432525.5_1_22:38886367-38903636:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	MSMS	A375_MHC_IP_R2	2	519.7514038085938	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.4	1	121.85	121.35	122.35	0.44488								0	0	0	0.14459	1	46432	46432		28.173	1.2896	1				63631	2826;2131	46439	46799	61987	61987					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;DDX5|p.Y425Lfs*24|1|0.13|ENSG00000108654|chr17:64500716-64500717|-/A|frameshift_variant;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5;ENST00000432525.5_1_22:38886367-38903636:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	MULTI-SECPEP	A375_MHC_IP_R2	2	520.2203369140625	2	519.820953	1037.62735	-0.57321	-0.00029796	0.050337	2.6166E-05	-0.52287	-0.0002718	519.8209509614672	118.52	1.9811	119.13	118.74	120.73	0.60909					109	38	5	0	0	0	0.011425	1	45227	45227		109.15	64.747	1	2146399999.9999998			63632	2826;2131	46439	46799	61988	61988					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;DDX5|p.Y425Lfs*24|1|0.13|ENSG00000108654|chr17:64500716-64500717|-/A|frameshift_variant;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5;ENST00000432525.5_1_22:38886367-38903636:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	MULTI-MATCH	A375_MHC_IP_R1	1		1	1038.63463	1037.62735	0.066591	6.9163E-05	1.1498	0.0011942	1.2164	0.0012634	1038.6357339510598	119.46	0.60973	119.46	119.28	119.89	0	0.11674	0.00012742	NaN	126.6	30	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226480000			63633	2826;2131	46439	46799							0.11004398242016578
YLLPKDIKL	9	Unmodified	_YLLPKDIKL_					0	0	0		RASL11A|p.A31V|1|0.33|ENSG00000122035|chr13:27271036-27271036|C/T|missense_variant;ENSG00000122035|ENST00000241463|RASL11A	RASL11A|p.A31V|1|0.33|ENSG00000122035|chr13:27271036-27271036|C/T|missense_variant	RASL11A|p.A31V|1|0.33|ENSG00000122035|chr13:27271036-27271036|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	368.6339416503906	3	368.23387	1101.67978	0.36889	0.00013584	-0.11305	-4.1627E-05	0.25585	9.4211E-05	368.2337808664667	78.114	0.50755	78.114	77.793	78.301	0					26	9	4	0	0	0	0.13728	1	28481	28481		43.982	6.9072	1	7268800			63634	3760	46440	46800	61989	61989					0.13300936584982992
YLLPKDIKL	9	Unmodified	_YLLPKDIKL_					0	0	0		RASL11A|p.A31V|1|0.33|ENSG00000122035|chr13:27271036-27271036|C/T|missense_variant;ENSG00000122035|ENST00000241463|RASL11A	RASL11A|p.A31V|1|0.33|ENSG00000122035|chr13:27271036-27271036|C/T|missense_variant	RASL11A|p.A31V|1|0.33|ENSG00000122035|chr13:27271036-27271036|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	552.246826171875	2	551.847167	1101.67978	-0.45347	-0.00025025	-0.12103	-6.6789E-05	-0.5745	-0.00031704	551.8470064065776	78.078	0.45674	78.078	77.844	78.301	0					19	8	3	0	0	0	0.11887	1	28480	28480		71.708	7.7474	1	5307200			63635	3760	46440	46800	61990	61990					0.13300936584982992
YLLPKDIKL	9	Unmodified	_YLLPKDIKL_					0	0	0		RASL11A|p.A31V|1|0.33|ENSG00000122035|chr13:27271036-27271036|C/T|missense_variant;ENSG00000122035|ENST00000241463|RASL11A	RASL11A|p.A31V|1|0.33|ENSG00000122035|chr13:27271036-27271036|C/T|missense_variant	RASL11A|p.A31V|1|0.33|ENSG00000122035|chr13:27271036-27271036|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	368.6336669921875	3	368.23387	1101.67978	0.212	7.8067E-05	-0.10845	-3.9935E-05	0.10355	3.8132E-05	368.2337661701713	77.14	0.50676	77.883	77.607	78.113	0.74293					24	9	3	0	0	0	0.11638	1	29262	29262		47.732	10.657	1	6583900			63636	3760	46440	46800	61991	61991					0.13300936584982992
YLLPKDIKL	9	Unmodified	_YLLPKDIKL_					0	0	0		RASL11A|p.A31V|1|0.33|ENSG00000122035|chr13:27271036-27271036|C/T|missense_variant;ENSG00000122035|ENST00000241463|RASL11A	RASL11A|p.A31V|1|0.33|ENSG00000122035|chr13:27271036-27271036|C/T|missense_variant	RASL11A|p.A31V|1|0.33|ENSG00000122035|chr13:27271036-27271036|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	552.2470092773438	2	551.847167	1101.67978	-0.78315	-0.00043218	0.11642	6.4246E-05	-0.66673	-0.00036793	551.8472553845493	77.14	0.60978	77.883	77.504	78.113	0.74293					21	11	3	0	0	0	0.16237	1	29276	29276		63.227	7.7248	1	4253100			63637	3760	46440	46800	61992	61992					0.13300936584982992
YLLPSVVLL	9	Unmodified	_YLLPSVVLL_					0	0	0		ENSG00000155189|ENST00000285518|AGPAT5;ENST00000518327.1_1_8:6566222-6612655:+|nuORF	ENSG00000155189|ENST00000285518|AGPAT5	ENSG00000155189|ENST00000285518|AGPAT5	MULTI-SECPEP	A375_MHC_IP_R1	1	1016.9963989257812	1	1016.63905	1015.63177	-0.084715	-8.6125E-05	-0.80797	-0.00082141	-0.89268	-0.00090754	1016.6384324288591	134.35	0.25275	134.35	134.22	134.47	0					8	4	3	0	0	0	0.71541	1	51852	51852		16.942	4.4107	1	7829600			63638	6131	46441	46801	61993	61993					0.12457862664939512
YLLPSVVLL	9	Unmodified	_YLLPSVVLL_					0	0	0		ENSG00000155189|ENST00000285518|AGPAT5;ENST00000518327.1_1_8:6566222-6612655:+|nuORF	ENSG00000155189|ENST00000285518|AGPAT5	ENSG00000155189|ENST00000285518|AGPAT5	MULTI-MATCH	A375_MHC_IP_R2	2		1	1016.63905	1015.63177	0.12314	0.00012519	-0.5032	-0.00051158	-0.38006	-0.00038639	1016.63861622397	134.18	0.20706	134.31	134.18	134.39	0.13901	-0.01577	0.00024196	NaN	16.942	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6597600			63639	6131	46441	46801							0.12457862664939512
YLLQILPH	8	Unmodified	_YLLQILPH_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.N3444Tfs*24|1|0.36|ENSG00000164199|chr5:90728837-90728837|A/-|frameshift_variant;nc|ENSG00000164199|Q8WXG9-3|ADGRV1;ENST00000504142.2_2_5:89924394-89949789:+|nuORF;nc|ENSG00000164199|Q8WXG9-4|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	A375_MHC_IP_R2	2	996.5647583007812	1	996.587679	995.580402	0.010724	1.0687E-05	-0.96046	-0.00095718	-0.94973	-0.00094649	996.588340645231	121.16	0.30375	121.61	121.37	121.67	0.44488					6	5	2	0	0	0	0.77686	1	46213	46213		6.3541	0	1	25551000			63640	6801	46442	46802	61994	61994					0.08243538690885543
YLLQLTHL	8	Unmodified	_YLLQLTHL_					0	0	0		ENST00000354852.5_1_11:5664972-5665041:+|nuORF	ENST00000354852.5_1_11:5664972-5665041:+|nuORF	ENST00000354852.5_1_11:5664972-5665041:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1000.64404296875	1	1000.58259	999.575317	0.58653	0.00058687	-3.3309	-0.0033329	-2.7444	-0.002746	1001.5825285715204	115.62	0.25421	115.62	115.43	115.68	0					6	4	2	0	0	0	0.7754	1	42414	42414		11.64	0	1	2841600			63641	10946	46443	46803	61995	61995					0.07551234828270026
YLLQRQYIP	9	Unmodified	_YLLQRQYIP_					0	0	0		ENSG00000101464|ENST00000217446|PIGU;nc|ENSG00000101464|Q9H490-2|PIGU;ENST00000438215.1_1_20:33173256-33203893:-|nuORF	ENSG00000101464|ENST00000217446|PIGU	ENSG00000101464|ENST00000217446|PIGU	MULTI-MSMS	A375_MHC_IP_R1	1	398.9609069824219	3	398.560758	1192.66044	-0.55617	-0.00022167	0.84005	0.00033481	0.28388	0.00011314	398.56104121526994	67.716	0.30116	67.716	67.603	67.904	0					8	5	2	0	0	0	0.65748	1	24583	24583		10.8	2.9535	1	1252400			63642	2302	46444	46804	61996	61996					0.07181980294080859
YLLSQIRNWWY	11	Unmodified	_YLLSQIRNWWY_					0	0	0			REV__BRINP2|p.C452Afs*63|1|0.29|ENSG00000198797|chr1:177280530-177280530|T/-|frameshift_variant	REV__BRINP2|p.C452Afs*63|1|0.29|ENSG00000198797|chr1:177280530-177280530|T/-|frameshift_variant	MSMS	A375_MHC_IP_R2	2	771.2470092773438	2	771.398618	1540.78268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.58	1	119.18	118.68	119.68	0.60909								0	0	0	0.1629	1	45040	45040		3.5965	0	1		+		63643	15528	46445	46805	61997	61997					0.03392397305651684
YLLSRLCVK	9	Unmodified	_YLLSRLCVK_					0	0	0			REV__ZDHHC16|p.S53F|1|0.44|ENSG00000171307|chr10:97451833-97451833|C/T|missense_variant	REV__ZDHHC16|p.S53F|1|0.44|ENSG00000171307|chr10:97451833-97451833|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	1094.9481201171875	1	1094.63906	1093.63179	0.10009	0.00010956	-4.3521	-0.0047639	-4.252	-0.0046544	1095.6361353563261	123.05	0.80933	123.43	123.17	123.98	0.3766					23	15	2	0	0	0	0.79683	1	47238	47238		5.2307	0	1	33484000	+		63644	21057	46446	46806	61998	61998					0.0887153939329437
YLLSYGHYL	9	Unmodified	_YLLSYGHYL_					0	0	0			REV__ENSG00000187498|ENST00000375820|COL4A1	REV__ENSG00000187498|ENST00000375820|COL4A1	MSMS	A375_MHC_IP_R2	2	564.6893920898438	2	564.78985	1127.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.97	1	126.26	125.76	126.76	0.2951								0	0	0	0.15486	1	49234	49234		13.508	2.7084	1		+		63645	22022	46447	46807	61999	61999					0.006466271030376447
YLLTSNFSILA	11	Unmodified	_YLLTSNFSILA_					0	0	0		ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	MSMS	A375_MHC_IP_R2	2	621.351806640625	2	621.342446	1240.67034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.6	1	119.21	118.71	119.71	0.60909								0	0	0	0.16191	1	45059	45059		8.7454	1.4562	1				63646	8705	46448	46808	62000	62000					0.059631235088318135
YLLVRPAGKR	10	Unmodified	_YLLVRPAGKR_					0	0	0			REV__ENSG00000102996|ENST00000219271|MMP15	REV__ENSG00000102996|ENST00000219271|MMP15	MSMS	A375_MHC_IP_R2	2	391.62493896484375	3	391.580264	1171.71896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.84	1	93.579	93.079	94.079	0.73902								0	0	0	0.15577	1	35301	35301		2.086	0	1		+		63647	17243	46449	46809	62001	62001					0.13997081659204014
YLLWKGNSI	9	Unmodified	_YLLWKGNSI_					0	0	0			REV__ENSG00000091409|ENST00000684293|ITGA6	REV__ENSG00000091409|ENST00000684293|ITGA6	MULTI-SECPEP	A375_MHC_IP_R2	2	547.1817016601562	2	547.305667	1092.59678	-0.73768	-0.00040374	0.078171	4.2784E-05	-0.65951	-0.00036095	547.3058283368674	101.85	0.55836	102.62	102.36	102.92	0.76429					25	10	3	0	0	0	0.62767	1	38705	38705		23.148	23.148	1	1835000	+		63648	16948	46450	46810	62002	62002					0.05418619857005069
YLLYDDKG	8	Unmodified	_YLLYDDKG_					0	0	0		ENSG00000183808|ENST00000520560|RBM12B	ENSG00000183808|ENST00000520560|RBM12B	ENSG00000183808|ENST00000520560|RBM12B	MULTI-MSMS	A375_MHC_IP_R1	1	987.5625	1	986.482939	985.475663	0.63592	0.00062732	2.1252	0.0020965	2.7611	0.0027238	986.4843116359331	114.79	1.2661	114.79	114.21	115.48	0					36	24	2	0	0	0	0.7758	1	41973	41973		10.183	3.8293	1	13794000			63649	8531	46451	46811	62003	62003					-0.017656275763329177
YLLYLQDLWT	10	Unmodified	_YLLYLQDLWT_					0	0	0		ENSG00000157551|ENST00000398938|KCNJ15	ENSG00000157551|ENST00000398938|KCNJ15	ENSG00000157551|ENST00000398938|KCNJ15	MULTI-SECPEP	A375_MHC_IP_R2	2	443.67938232421875	3	443.23594	1326.68599	-0.31847	-0.00014116	-3.2136	-0.0014244	-3.5321	-0.0015656	443.56924922226625	62.987	0.3036	63.73	63.584	63.888	0.74263					7	5	2	0	0	0	0.93911	1	23895	23895		7.1017	2.3858	1	897650			63650	6251	46452	46812	62004	62004					0.03571410025847399
YLMDKFAEY	9	Unmodified	_YLMDKFAEY_					0	0	0			REV__ENSG00000143324|ENST00000367590|XPR1	REV__ENSG00000143324|ENST00000367590|XPR1	MSMS	A375_MHC_IP_R1	1	590.2191162109375	2	590.273175	1178.5318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.504	1	95.504	95.004	96.004	0								0	0	0	0.15486	1	35103	35103		13.508	2.684	1		+		63651	19346	46453	46813	62005	62005					-0.050327427311685824
YLMEVTHDL	9	Unmodified	_YLMEVTHDL_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;nc|ENSG00000133706|Q9P2J5-3|LARS1	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	A375_MHC_IP_R2	2	560.7273559570312	2	560.7708	1119.52705	-0.63543	-0.00035633	-0.31188	-0.0001749	-0.94731	-0.00053122	560.7704877075878	75.639	0.5626	76.379	76.078	76.64	0.74052					16	10	2	0	0	0	0.091096	2	28691	28691;28716		52.268	28.248	1	3076300			63652	4525	46454	46814	62006;62007	62006					-0.02793626873926769
YLMFLISI	8	Unmodified	_YLMFLISI_					0	0	0			REV__tr|U7STG1|U7STG1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01472PE=4SV=1	REV__tr|U7STG1|U7STG1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01472PE=4SV=1	MSMS	A375_MHC_IP_R1	1	500.44805908203125	2	500.282815	998.551076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.012	1	56.012	55.512	56.512	0								0	0	0	0.16876	1	20053	20053		14.582	1.0738	1		+		63653	28484	46455	46815	62008	62008					0.05174258350416494
YLMRNPRD	8	Unmodified	_YLMRNPRD_					0	0	0		ENSG00000105398|ENST00000222002|SULT2A1	ENSG00000105398|ENST00000222002|SULT2A1	ENSG00000105398|ENST00000222002|SULT2A1	MULTI-SECPEP	A375_MHC_IP_R2	2	1064.0242919921875	1	1064.53057	1063.5233	0.14699	0.00015647	0.76435	0.00081368	0.91134	0.00097015	1064.5339685463146	119.07	1.0157	119.61	118.73	119.75	0.54344					41	19	3	0	0	0	0.95423	1	44932	44932		18.135	10.225	1	54135000			63654	2600	46456	46816	62009	62009					-0.005922518571196633
YLNDFTHEI	9	Unmodified	_YLNDFTHEI_					0	0	0		ENSG00000095574|ENST00000368886|IKZF5	ENSG00000095574|ENST00000368886|IKZF5	ENSG00000095574|ENST00000368886|IKZF5	MULTI-MSMS	A375_MHC_IP_R1	1	576.6716918945312	2	576.272021	1150.52949	-0.1829	-0.0001054	-0.58839	-0.00033908	-0.77129	-0.00044447	576.2717974803774	75.617	0.65313	75.617	75.262	75.915	0					26	12	3	0	0	0	0.066859	2	27524	27524;27574		57.722	31.454	1	4952600			63655	2046	46457	46817	62010;62011	62010					-0.03975455144609441
YLNDFTHEI	9	Unmodified	_YLNDFTHEI_					0	0	0		ENSG00000095574|ENST00000368886|IKZF5	ENSG00000095574|ENST00000368886|IKZF5	ENSG00000095574|ENST00000368886|IKZF5	MULTI-MSMS	A375_MHC_IP_R2	2	576.6721801757812	2	576.272021	1150.52949	-0.23844	-0.00013741	-0.59614	-0.00034354	-0.83458	-0.00048095	576.2716930848808	74.836	0.60706	75.574	75.315	75.922	0.73752					27	11	3	0	0	0	0.054426	2	28389	28377;28389		62.573	34.086	1	6686000			63656	2046	46457	46817	62012;62013	62013					-0.03975455144609441
YLNDGLWHM	9	Oxidation (M)	_YLNDGLWHM(Oxidation (M))_		YLNDGLWHM(1)		YLNDGLWHM(52)	0	0	1		ENST00000487133.1_1_X:119742243-119746116:+|nuORF;nc|ENSG00000232119|Q9ULC4-2|MCTS1;ENSG00000232119|ENST00000371317|MCTS1;ENSG00000101898|ENST00000394552|MCTS2;nc|ENSG00000232119|Q9ULC4-3|MCTS1	ENST00000487133.1_1_X:119742243-119746116:+|nuORF	ENST00000487133.1_1_X:119742243-119746116:+|nuORF	MSMS	A375_MHC_IP_R1	1	582.7185668945312	2	582.760766	1163.50698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.467	1	71.467	70.967	71.967	0								0	0	0	0.056811	1	25967	25967		52.268	23.187	1				63657	2334	46458	46818	62014	62014		98			-0.0682337781388469
YLNNYFIY	8	Unmodified	_YLNNYFIY_					0	0	0			REV__tr|U7SJP3|U7SJP3_FUSNUHelix-turn-helixtype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02041PE=4SV=1	REV__tr|U7SJP3|U7SJP3_FUSNUHelix-turn-helixtype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02041PE=4SV=1	MSMS	A375_MHC_IP_R2	2	555.1929321289062	2	555.26875	1108.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.437	1	83.18	82.68	83.68	0.74293								0	0	0	0.16876	1	31314	31314		17.087	4.555	1		+		63658	28241	46459	46819	62015	62015					-0.026973483053325253
YLNPSVISL	9	Unmodified	_YLNPSVISL_					0	0	0		ENSG00000132356|ENST00000397128|PRKAA1;nc|ENSG00000132356|Q13131-2|PRKAA1	ENSG00000132356|ENST00000397128|PRKAA1	ENSG00000132356|ENST00000397128|PRKAA1	MULTI-MSMS	A375_MHC_IP_R1	1	1005.9627685546875	1	1005.56152	1004.55425	0.63371	0.00063723	0.96588	0.00097125	1.5996	0.0016085	1005.5614581157174	113.26	0.40396	113.26	112.99	113.4	0					12	7	2	0	0	0	0.0099819	1	41475	41475		122.18	26.068	1	3079600			63659	4396	46460	46820	62016	62016					0.052152247287722275
YLNQHIEHV	9	Unmodified	_YLNQHIEHV_					0	0	0		ENSG00000134899|ENST00000652225|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	MULTI-MSMS	A375_MHC_IP_R1	1	385.2649841308594	3	384.864729	1151.57236	0.12581	4.8419E-05	0.16617	6.3952E-05	0.29197	0.00011237	384.86480933648255	28.163	0.55351	28.163	27.887	28.44	0					22	10	3	0	0	0	0.34064	1	8649	8649		20.581	7.7083	1	14616000			63660	4621	46461	46821	62017	62017					0.002633597034673585
YLNQHIEHV	9	Unmodified	_YLNQHIEHV_					0	0	0		ENSG00000134899|ENST00000652225|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	MULTI-SECPEP	A375_MHC_IP_R2	2	385.2645568847656	3	384.864729	1151.57236	-0.049466	-1.9038E-05	0.29797	0.00011468	0.2485	9.564E-05	384.86477789304973	27.445	0.50681	28.124	27.895	28.401	0.67857					20	9	3	0	0	0	0.49205	1	9378	9378		20.581	19.883	1	15090000			63661	4621	46461	46821	62018	62018					0.002633597034673585
YLNVQVKEL	9	Unmodified	_YLNVQVKEL_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-SECPEP	A375_MHC_IP_R1	1	553.7161865234375	2	553.316232	1104.61791	-0.71907	-0.00039788	0.38864	0.00021504	-0.33043	-0.00018283	553.3162706656404	66.107	0.60835	66.107	65.819	66.428	0					20	11	3	0	0	0	0.061442	1	23963	23963		82.529	38.671	1	1988500			63662	3184	46462	46822	62019	62019					0.06978585165848017
YLNYVVHL	8	Unmodified	_YLNYVVHL_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-SECPEP	A375_MHC_IP_R1	1	511.1787414550781	2	510.779285	1019.54402	-0.44145	-0.00022548	-1.1386	-0.00058158	-1.5801	-0.00080706	510.77839406620757	63.776	0.91606	63.776	63.477	64.393	0					34	17	3	0	0	0	0.93416	1	23104	23104		9.3474	0	1	2224700			63663	8951	46463	46823	62020	62020					0.03502661794186679
YLPCLWRPPQ	10	Unmodified	_YLPCLWRPPQ_					0	0	0		ENST00000579645.5_1_17:20924532-20946649:-|nuORF	ENST00000579645.5_1_17:20924532-20946649:-|nuORF	ENST00000579645.5_1_17:20924532-20946649:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	636.20751953125	2	636.831526	1271.6485	-0.766	-0.00048781	2.2355	0.0014236	1.4695	0.0009358	636.8330434899734	58.638	0.40782	58.638	58.328	58.736	0					11	7	2	0	0	0	0.9269	1	21001	21001		6.7232	0	1	1062100			63664	13664	46464	46824	62021	62021					0.02354040279237779
YLPDIIKDQKA	11	Unmodified	_YLPDIIKDQKA_					0	0	0		ENSG00000115241|ENST00000344034|PPM1G	ENSG00000115241|ENST00000344034|PPM1G	ENSG00000115241|ENST00000344034|PPM1G	MULTI-MSMS	A375_MHC_IP_R1	1	435.64678955078125	3	435.246727	1302.71835	-0.30448	-0.00013252	0.20859	9.0786E-05	-0.095894	-4.1738E-05	435.2468412466198	53.167	0.86194	53.167	52.592	53.453	0					39	16	4	0	0	0	0.056403	2	18909	18909;19025		78.116	59.776	1	16418000			63665	3288	46465	46825	62022;62023	62022					0.07910197428850552
YLPDIIKDQKA	11	Unmodified	_YLPDIIKDQKA_					0	0	0		ENSG00000115241|ENST00000344034|PPM1G	ENSG00000115241|ENST00000344034|PPM1G	ENSG00000115241|ENST00000344034|PPM1G	MULTI-MSMS	A375_MHC_IP_R1	1	652.7662353515625	2	652.366453	1302.71835	-0.52738	-0.00034405	-0.041237	-2.6901E-05	-0.56862	-0.00037095	652.3664365415993	53.157	0.55695	53.157	52.897	53.453	0					20	10	3	0	0	0	0.39839	1	18921	18921		53.47	33.055	1	5017500			63666	3288	46465	46825	62024	62024					0.07910197428850552
YLPDIIKDQKA	11	Unmodified	_YLPDIIKDQKA_					0	0	0		ENSG00000115241|ENST00000344034|PPM1G	ENSG00000115241|ENST00000344034|PPM1G	ENSG00000115241|ENST00000344034|PPM1G	MULTI-MSMS	A375_MHC_IP_R2	2	435.9813537597656	3	435.246727	1302.71835	-0.69126	-0.00030087	0.29881	0.00013006	-0.39244	-0.00017081	435.2467811004427	52.385	0.65739	53.138	52.831	53.489	0.75225					33	12	4	0	0	0	0.18322	1	19722	19722		55.839	36.695	1	13387000			63667	3288	46465	46825	62025	62025					0.07910197428850552
YLPDIIKDQKA	11	Unmodified	_YLPDIIKDQKA_					0	0	0		ENSG00000115241|ENST00000344034|PPM1G	ENSG00000115241|ENST00000344034|PPM1G	ENSG00000115241|ENST00000344034|PPM1G	MULTI-MSMS	A375_MHC_IP_R2	2	652.76611328125	2	652.366453	1302.71835	-1.2007	-0.00078331	0.35379	0.0002308	-0.84692	-0.00055251	652.3666877219033	52.384	0.40374	53.137	52.932	53.336	0.75225					13	7	2	0	0	0	0.59478	1	19749	19749		33.821	18.573	1	3302200			63668	3288	46465	46825	62026	62026					0.07910197428850552
YLPEDFIRV	9	Unmodified	_YLPEDFIRV_					0	0	0		ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	MULTI-MSMS	A375_MHC_IP_R1	1	576.7080078125	2	576.308406	1150.60226	-0.14349	-8.2697E-05	0.053589	3.0884E-05	-0.089905	-5.1813E-05	576.3084173805626	103.71	2.4897	103.71	103.01	105.5	0					154	48	5	0	0	0	0.054426	2	38137	38137;38386		62.573	28.171	1	76912000			63669	4548	46466	46826	62027;62028	62027					0.03298298648792297
YLPEDFIRV	9	Unmodified	_YLPEDFIRV_					0	0	0		ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	MULTI-MSMS	A375_MHC_IP_R2	2	576.7078247070312	2	576.308406	1150.60226	-0.15991	-9.216E-05	-0.41593	-0.00023971	-0.57585	-0.00033186	576.3081284316868	102.92	2.5929	103.68	103.07	105.67	0.76428					158	50	5	0	0	0	0.082375	1	39050	39050		53.833	11.993	1	77179000			63670	4548	46466	46826	62029	62029					0.03298298648792297
YLPELLQTV	9	Unmodified	_YLPELLQTV_					0	0	0		ENSG00000171617|ENST00000302351|ENC1;nc|ENSG00000171617|O14682-2|ENC1	ENSG00000171617|ENST00000302351|ENC1	ENSG00000171617|ENST00000302351|ENC1	MSMS	A375_MHC_IP_R2	2	538.7058715820312	2	538.305332	1074.59611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.16	1	125.46	124.96	125.96	0.2951								0	0	0	0.00062231	1	48672	48672		103.35	49.95	1				63671	7622	46467	46827	62030	62030					0.0617978041727838
YLPHAPPFA	9	Unmodified	_YLPHAPPFA_					0	0	0		ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-SECPEP	A375_MHC_IP_R1	1	507.1657409667969	2	506.766178	1011.5178	-0.3048	-0.00015446	0.073215	3.7103E-05	-0.23158	-0.00011736	506.7661706839227	68.743	1.168	68.743	68.31	69.478	0					49	22	3	0	0	0	0.0515	1	24904	24904		79.935	53.593	1	6976700			63672	7586	46468	46828	62031	62031					0.012503926227054762
YLPHEELF	8	Unmodified	_YLPHEELF_					0	0	0		ENSG00000124459|ENST00000269973|ZNF45	ENSG00000124459|ENST00000269973|ZNF45	ENSG00000124459|ENST00000269973|ZNF45	MULTI-MSMS	A375_MHC_IP_R2	2	524.6596069335938	2	524.260925	1046.5073	-0.30878	-0.00016188	-1.33	-0.00069727	-1.6388	-0.00085915	524.2600497480136	112.57	0.5087	113.3	112.97	113.48	0.72458					23	9	3	0	0	0	0.75322	1	42402	42402		19.439	0.18201	1	3433800			63673	3901	46469	46829	62032	62032					-0.014096348223802124
YLPHEELF	8	Unmodified	_YLPHEELF_					0	0	0		ENSG00000124459|ENST00000269973|ZNF45	ENSG00000124459|ENST00000269973|ZNF45	ENSG00000124459|ENST00000269973|ZNF45	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	524.260925	1046.5073	-0.30878	-0.00016188	-1.33	-0.00069727	-1.6388	-0.00085915	524.2600497480136	112.57	0.5087	113.3	112.97	113.48	0.72458	-0.013107	0.00020716	NaN	19.439	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3433800			63674	3901	46469	46829							-0.014096348223802124
YLPLEVCN	8	Unmodified	_YLPLEVCN_					0	0	0		nc|ENSG00000123908|Q9UKV8-2|AGO2;ENSG00000123908|ENST00000220592|AGO2;ENSG00000092847|ENST00000373204|AGO1;nc|ENSG00000126070|Q9H9G7-2|AGO3;ENSG00000126070|ENST00000373191|AGO3;ENSG00000134698|ENST00000373210|AGO4	nc|ENSG00000123908|Q9UKV8-2|AGO2;nc|ENSG00000126070|Q9H9G7-2|AGO3;ENSG00000134698|ENST00000373210|AGO4	nc|ENSG00000123908|Q9UKV8-2|AGO2	MULTI-MSMS	A375_MHC_IP_R2	2	475.6545715332031	2	475.736228	949.457904	-0.85808	-0.00040822	-0.86863	-0.00041324	-1.7267	-0.00082146	475.7361931743542	58.731	0.71374	59.478	58.927	59.641	0.74714					17	13	2	0	0	0	0.75322	1	22207	22207		19.439	0	1	950350			63675	3862;4023;4597	46470	46830	62033	62033					-0.018846661028419476
YLPLRPSEGF	10	Unmodified	_YLPLRPSEGF_					0	0	0		ENSG00000203786|ENST00000606109|KPRP	ENSG00000203786|ENST00000606109|KPRP	ENSG00000203786|ENST00000606109|KPRP	MULTI-SECPEP	A375_MHC_IP_R2	2	589.6795654296875	2	589.813856	1177.61316	-0.72272	-0.00042627	0.014149	8.3452E-06	-0.70857	-0.00041792	589.8137330914055	72.402	0.96183	73.137	72.62	73.581	0.73541					29	18	2	0	0	0	0.88918	1	27408	27408		13.042	0	1	3293400			63676	9395	46471	46831	62034	62034					0.031457010230724336
YLPLYVARL	9	Unmodified	_YLPLYVARL_					0	0	0		nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2;ENST00000482393.1_1_13:103309549-103320211:+|nuORF;ENST00000466153.5_1_13:103307300-103330663:+|nuORF	nc|ENSG00000134900|P29144|TPP2	nc|ENSG00000134900|P29144|TPP2	MSMS	A375_MHC_IP_R1	1	554.2293701171875	2	554.331685	1106.64882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.13	1	123.13	122.63	123.63	0								0	0	0	0.15486	1	45960	45960		4.3292	0.73274	1				63677	4622	46472	46832	62035	62035					0.09975783270760985
YLPPATQVV	9	Unmodified	_YLPPATQVV_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78112818-78113115:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	A375_MHC_IP_R1	1	494.67889404296875	2	494.279118	986.543683	-0.3758	-0.00018575	0.027441	1.3563E-05	-0.34836	-0.00017219	494.27906536329914	75.642	1.8179	75.642	75.009	76.827	0					107	35	4	0	0	0	0.01574	2	27635	27431;27635		88.904	44.047	1	24290000			63678	5252	46473	46833	62036;62037	62037					0.049872420743326984
YLPPATQVV	9	Unmodified	_YLPPATQVV_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78112818-78113115:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	A375_MHC_IP_R2	2	494.678955078125	2	494.279118	986.543683	-0.54102	-0.00026742	0.0060366	2.9838E-06	-0.53498	-0.00026443	494.27904656802116	74.885	1.9324	75.622	74.907	76.84	0.73751					105	37	4	0	0	0	0.026268	4	28491	28272;28491;28624;28711		78.149	36.31	1	23161000			63679	5252	46473	46833	62038;62039;62040;62041	62039					0.049872420743326984
YLPPELQPV	9	Unmodified	_YLPPELQPV_					0	0	0		nc|ENSG00000187510|Q6ZR37-3|PLEKHG7;nc|ENSG00000187510|Q6ZR37-2|PLEKHG7;ENSG00000187510|ENST00000344636|PLEKHG7	nc|ENSG00000187510|Q6ZR37-3|PLEKHG7	nc|ENSG00000187510|Q6ZR37-3|PLEKHG7	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6688232421875	2	528.292225	1054.5699	-0.78792	-0.00041625	-1.9272	-0.0010181	-2.7151	-0.0014344	528.2910459702539	61.91	1.1123	62.652	62.068	63.18	0.74263					27	21	2	0	0	0	0.58271	1	23490	23490		20.454	4.6064	1	2054100			63680	8828	46474	46834	62042	62042					0.044795112457904906
YLPPGFLSA	9	Unmodified	_YLPPGFLSA_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	A375_MHC_IP_R1	1	964.3953247070312	1	964.513845	963.506569	0.31015	0.00029915	0.0060714	5.8559E-06	0.31622	0.000305	964.513764062426	109.39	1.7778	109.39	108.56	110.34	0					78	34	3	0	0	0	0.2264	1	40344	40344		36.044	3.9272	1	12363000			63681	1535	46475	46835	62043	62043					0.02335570528578046
YLPPGFLSA	9	Unmodified	_YLPPGFLSA_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MATCH	A375_MHC_IP_R2	2		1	964.513845	963.506569	-0.048925	-4.7189E-05	0.31122	0.00030017	0.26229	0.00025299	964.5140478919972	108.66	1.6306	109.41	108.6	110.23	0.74683	0.0096369	0.00014692	NaN	36.044	75	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12412000			63682	1535	46475	46835							0.02335570528578046
YLPPLLLVQLL	11	Unmodified	_YLPPLLLVQLL_					0	0	0			REV__ENST00000529121.2_1_11:61102034-61102169:+|nuORF	REV__ENST00000529121.2_1_11:61102034-61102169:+|nuORF	MSMS	A375_MHC_IP_R1	1	641.4513549804688	2	641.412675	1280.8108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.222	1	77.222	76.722	77.722	0								0	0	0	0.1629	1	28167	28167		3.5965	1.9439	1		+		63683	25813	46476	46836	62044	62044					0.18162327233039832
YLPPMAHFF	9	Unmodified	_YLPPMAHFF_					0	0	0		ENST00000413628.5_1_1:68568378-68586877:+|nuORF	ENST00000413628.5_1_1:68568378-68586877:+|nuORF	ENST00000413628.5_1_1:68568378-68586877:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	375.25286865234375	3	374.852884	1121.53682	0.37904	0.00014208	-0.8115	-0.00030419	-0.43246	-0.00016211	374.852546056793	44.072	0.5623	44.072	43.808	44.37	0					23	10	3	0	0	0	0.64653	1	15334	15334		9.3831	0	1	5780400			63684	11659	46477	46837	62045	62045					-0.019083940778955366
YLPRKPQAM	9	Unmodified	_YLPRKPQAM_					0	0	0		ENSG00000110427|ENST00000658780|KIAA1549L;nc|ENSG00000110427|Q6ZVL6|KIAA1549L;nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L	ENSG00000110427|ENST00000658780|KIAA1549L	ENSG00000110427|ENST00000658780|KIAA1549L	MULTI-SECPEP	A375_MHC_IP_R1	1	367.9453430175781	3	368.539188	1102.59573	0.11618	4.2818E-05	0.011099	4.0904E-06	0.12728	4.6908E-05	368.8732638472395	39.571	0.50554	39.571	39.289	39.794	0					13	9	2	0	0	0	0.62767	1	13419	13419		7.609	4.0219	1	1657200			63685	2934	46478	46838	62046	62046					0.04854082216434108
YLPRKPQAM	9	Unmodified	_YLPRKPQAM_					0	0	0		ENSG00000110427|ENST00000658780|KIAA1549L;nc|ENSG00000110427|Q6ZVL6|KIAA1549L;nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L	ENSG00000110427|ENST00000658780|KIAA1549L	ENSG00000110427|ENST00000658780|KIAA1549L	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	368.539188	1102.59573	-0.13832	-5.0977E-05	-0.39979	-0.00014734	-0.53812	-0.00019832	368.5392099175792	38.573	0.45811	39.348	39.098	39.556	0.77451	-0.11183	-0.00015372	NaN	7.609	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3192100			63686	2934	46478	46838							0.04854082216434108
YLPSSYVTKGL	11	Unmodified	_YLPSSYVTKGL_					0	0	0			REV__ENST00000370481.8_1_1:89472980-89473100:-|nuORF	REV__ENST00000370481.8_1_1:89472980-89473100:-|nuORF	MSMS	A375_MHC_IP_R2	2	409.94677734375	3	409.892173	1226.65469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.124	1	51.878	51.378	52.378	0.75406								0	0	0	0.16258	1	19238	19238		2.4348	0	1		+		63687	24031	46479	46839	62047	62047					0.05042836991742661
YLPYLHEWKHW	11	Unmodified	_YLPYLHEWKHW_					0	0	0		ENST00000545247.6_1_11:18505612-18548363:-|nuORF	ENST00000545247.6_1_11:18505612-18548363:-|nuORF	ENST00000545247.6_1_11:18505612-18548363:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	786.7926025390625	2	786.393336	1570.77212	-0.80138	-0.0006302	-0.16444	-0.00012932	-0.96582	-0.00075952	786.3933467099836	141.8	0.15146	141.8	141.73	141.88	0					4	2	2	0	0	0	0.73897	1	54444	54444		0.35063	0	1	1402800			63688	13322	46480	46840	62048	62048					0.009564146511820582
YLPYNHQHEYF	11	Unmodified	_YLPYNHQHEYF_					0	0	0		nc|ENSG00000134824|O95864-3|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2	nc|ENSG00000134824|O95864-3|FADS2	nc|ENSG00000134824|O95864-3|FADS2	MSMS	A375_MHC_IP_R1	1	755.841064453125	2	755.841133	1509.66771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.54	1	143.54	143.04	144.04	0								0	0	0	0.1636	1	55066	55066		0	0	1				63689	4613	46481	46841	62049	62049					-0.06673331896172385
YLPYPIHQV	9	Unmodified	_YLPYPIHQV_					0	0	0		ENST00000497188.1_1_1:155234069-155238352:-|nuORF;nc|ENSG00000176444|P49760-3|CLK2;ENSG00000176444|ENST00000368361|CLK2	ENST00000497188.1_1_1:155234069-155238352:-|nuORF	ENST00000497188.1_1_1:155234069-155238352:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	565.70556640625	2	565.305667	1128.59678	-0.36451	-0.00020606	-0.50724	-0.00028674	-0.87175	-0.0004928	565.305793849463	69.728	0.71133	70.462	70.081	70.793	0.73421					40	13	4	0	0	0	0.05755	1	26400	26400		81.613	50.345	1	19916000			63690	12740	46482	46842	62050	62050					0.03762619856979654
YLQDVIMQV	9	Oxidation (M)	_YLQDVIM(Oxidation (M))QV_		YLQDVIM(1)QV		YLQDVIM(48)QV	0	0	1		ENST00000482153.1_1_10:135122453-135123793:+|nuORF;ENSG00000198546|ENST00000361518|ZNF511;nc|ENSG00000198546|Q8NB15-1|ZNF511	ENST00000482153.1_1_10:135122453-135123793:+|nuORF	ENST00000482153.1_1_10:135122453-135123793:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	562.7769165039062	2	562.78645	1123.55835	-0.35214	-0.00019818	2.5925	0.001459	2.2403	0.0012608	562.7883115692148	93.508	1.1201	93.508	92.871	93.991	0					30	21	2	0	0	0	0.11715	1	34347	34347		47.594	18.513	1	962490			63691	9280	46483	46843	62051	62051		422			0.0015094616016995133
YLQDVIMQV	9	Oxidation (M)	_YLQDVIM(Oxidation (M))QV_					0	0	1		ENST00000482153.1_1_10:135122453-135123793:+|nuORF;ENSG00000198546|ENST00000361518|ZNF511;nc|ENSG00000198546|Q8NB15-1|ZNF511	ENST00000482153.1_1_10:135122453-135123793:+|nuORF	ENST00000482153.1_1_10:135122453-135123793:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	562.78645	1123.55835	-0.46617	-0.00026236	0.21782	0.00012259	-0.24835	-0.00013977	562.7867873802359	92.908	1.0152	93.647	93.19	94.205	0.73902	0.069625	-0.00095556	NaN	47.594	23	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	855750			63692	9280	46483	46843				422			0.0015094616016995133
YLQDVIMQV	9	Unmodified	_YLQDVIMQV_					0	0	0		ENST00000482153.1_1_10:135122453-135123793:+|nuORF;ENSG00000198546|ENST00000361518|ZNF511;nc|ENSG00000198546|Q8NB15-1|ZNF511	ENST00000482153.1_1_10:135122453-135123793:+|nuORF	ENST00000482153.1_1_10:135122453-135123793:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	555.1885375976562	2	554.788992	1107.56343	-0.1653	-9.1706E-05	-0.55772	-0.00030942	-0.72302	-0.00040113	554.7885684984009	115.5	0.45872	115.5	115.32	115.78	0					12	8	2	0	0	0	0.054426	1	42389	42389		62.573	4.8507	1	2611700			63693	9280	46483	46844	62052	62052					0.013952500227787823
YLQDVIMQV	9	Unmodified	_YLQDVIMQV_					0	0	0		ENST00000482153.1_1_10:135122453-135123793:+|nuORF;ENSG00000198546|ENST00000361518|ZNF511;nc|ENSG00000198546|Q8NB15-1|ZNF511	ENST00000482153.1_1_10:135122453-135123793:+|nuORF	ENST00000482153.1_1_10:135122453-135123793:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	554.788992	1107.56343	-0.58075	-0.00032219	-1.8241	-0.001012	-2.4048	-0.0013342	554.787911853141	114.66	0.51044	115.35	115.22	115.73	0.68999	-0.078778	-0.00095314	NaN	62.573	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1425200			63694	9280	46483	46844							0.013952500227787823
YLQDYTDRV	9	Unmodified	_YLQDYTDRV_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	A375_MHC_IP_R1	1	587.1826782226562	2	586.782753	1171.55095	0.11664	6.8444E-05	-0.83288	-0.00048872	-0.71624	-0.00042028	586.7823054270096	49.434	0.40671	49.434	49.235	49.642	0					12	7	2	0	0	0	0.095851	1	17517	17517		51.415	20.779	1	2507800			63695	8493;12337	46484	46845	62053	62053					-0.027960701159145174
YLQDYTDRV	9	Unmodified	_YLQDYTDRV_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	A375_MHC_IP_R2	2	587.1820068359375	2	586.782753	1171.55095	-0.64148	-0.00037641	-0.76379	-0.00044818	-1.4053	-0.00082459	586.7822074081863	48.785	0.50976	49.542	49.231	49.741	0.75737					16	9	2	0	0	0	0.095851	1	18382	18382		51.415	18.63	1	2614200			63696	8493;12337	46484	46845	62054	62054					-0.027960701159145174
YLQEIQKHN	9	Unmodified	_YLQEIQKHN_					0	0	0			REV__nc|ENSG00000110693|P35712-3|SOX6	REV__nc|ENSG00000110693|P35712-3|SOX6	MULTI-SECPEP	A375_MHC_IP_R1	1	391.95751953125	3	391.540134	1171.59857	0.23504	9.2029E-05	0.0031112	1.2182E-06	0.23815	9.3247E-05	391.54014030642224	51.244	0.5093	51.244	50.966	51.475	0					14	9	2	0	0	0	0.77834	1	18102	18102		5.2969	0	1	1082500	+		63697	17635	46485	46846	62055	62055					0.019636288749552477
YLQEIQTQL	9	Unmodified	_YLQEIQTQL_					0	0	0		nc|ENSG00000138468|Q9BQF6-4|SENP7;nc|ENSG00000138468|Q9BQF6-5|SENP7;nc|ENSG00000138468|Q9BQF6-2|SENP7;ENSG00000138468|ENST00000394095|SENP7	nc|ENSG00000138468|Q9BQF6-4|SENP7	nc|ENSG00000138468|Q9BQF6-4|SENP7	MULTI-SECPEP	A375_MHC_IP_R1	1	568.7027587890625	2	568.303321	1134.59209	-0.47374	-0.00026923	-0.10304	-5.856E-05	-0.57678	-0.00032779	568.3033170478736	83.949	1.1148	83.949	83.634	84.749	0					47	21	3	0	0	0	0.010978	1	30685	30685		142.08	49.426	1	7640000			63698	4999	46486	46847	62056	62056					0.030176909235706262
YLQEIQTQL	9	Unmodified	_YLQEIQTQL_					0	0	0		nc|ENSG00000138468|Q9BQF6-4|SENP7;nc|ENSG00000138468|Q9BQF6-5|SENP7;nc|ENSG00000138468|Q9BQF6-2|SENP7;ENSG00000138468|ENST00000394095|SENP7	nc|ENSG00000138468|Q9BQF6-4|SENP7	nc|ENSG00000138468|Q9BQF6-4|SENP7	MULTI-SECPEP	A375_MHC_IP_R2	2	568.7032470703125	2	568.303321	1134.59209	-0.32653	-0.00018557	-0.36424	-0.000207	-0.69077	-0.00039256	568.3031553430184	83.221	1.2234	83.96	83.645	84.868	0.73962					51	23	3	0	0	0	0.013591	1	31598	31598		118.07	48.963	1	7339700			63699	4999	46486	46847	62057	62057					0.030176909235706262
YLQEKAKEKY	10	Unmodified	_YLQEKAKEKY_					0	0	0		ENST00000529615.1_1_11:27359677-27371953:-|nuORF;ENSG00000109881|ENST00000328697|CCDC34	ENST00000529615.1_1_11:27359677-27371953:-|nuORF	ENST00000529615.1_1_11:27359677-27371953:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	433.62579345703125	3	433.902961	1298.68705	-0.71975	-0.0003123	-0.23673	-0.00010272	-0.95648	-0.00041502	433.90274418680866	33.943	0.35364	34.695	34.5	34.853	0.75225					10	6	2	0	0	0	0.92603	1	12153	12153		8.9762	3.9287	1	1619100			63700	2899	46487	46848	62058	62058					0.04965624394776569
YLQELLEE	8	Unmodified	_YLQELLEE_					0	0	0			REV__ENSG00000172458|ENST00000682841|IL17D	REV__ENSG00000172458|ENST00000682841|IL17D	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1869506835938	2	518.763497	1035.51244	-0.84247	-0.00043704	-4.3921	-0.0022785	-5.2346	-0.0027155	519.2642073408435	41.466	0.25241	42.24	42.047	42.3	0.77451					7	4	2	0	0	0	0.91495	1	15351	15351		24.674	4.2203	1	1240700	+		63701	21145	46488	46849	62059	62059					-0.003893757504329187
YLQENLQF	8	Unmodified	_YLQENLQF_					0	0	0			REV__ENSG00000256812|ENST00000457326|CAPNS2	REV__ENSG00000256812|ENST00000457326|CAPNS2	MULTI-MSMS	A375_MHC_IP_R2	2	527.6688232421875	2	527.763832	1053.51311	-0.81639	-0.00043086	0.021356	1.1271E-05	-0.79503	-0.00041959	527.763868064745	61.299	1.5133	62.044	61.263	62.776	0.74503					82	29	6	0	0	0	0.73946	1	23490	23490		23.148	0	1	155110000	+		63702	22885	46489	46850	62060	62060					-0.011505363107289668
YLQKETSTL	9	Unmodified	_YLQKETSTL_					0	0	0		nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-7|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	nc|ENSG00000161813|Q71RC2-3|LARP4	MULTI-SECPEP	A375_MHC_IP_R2	2	542.189453125	2	541.790047	1081.56554	-0.86302	-0.00046758	-0.0084941	-4.602E-06	-0.87152	-0.00047218	541.7898759051249	30.904	0.40384	31.623	31.417	31.821	0.71857					12	7	2	0	0	0	0.14606	1	10942	10942		55.503	15.054	1	1878200			63703	6487	46490	46851	62061	62061					0.02802002032240125
YLQLTRQL	8	Unmodified	_YLQLTRQL_					0	0	0		ENSG00000085449|ENST00000233055|WDFY1	ENSG00000085449|ENST00000233055|WDFY1	ENSG00000085449|ENST00000233055|WDFY1	MSMS	A375_MHC_IP_R2	2	517.5587158203125	2	517.803291	1033.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.996	1	59.744	59.244	60.244	0.74714								0	0	0	0.16876	1	22324	22324		13.508	3.3245	1				63704	1813	46491	46852	62062	62062					0.07657735714224145
YLQPHGPLLV	10	Unmodified	_YLQPHGPLLV_					0	0	0		nc|ENSG00000108846|O15438-3|ABCC3	nc|ENSG00000108846|O15438-3|ABCC3	nc|ENSG00000108846|O15438-3|ABCC3	MULTI-MSMS	A375_MHC_IP_R1	1	380.9577331542969	3	379.553603	1135.63898	0.42917	0.00016289	0.61348	0.00023285	1.0426	0.00039574	379.5536597016221	81.893	0.81017	81.893	81.506	82.316	0					63	15	6	0	0	0	0.71811	1	30017	30017		4.1895	0.60244	1	22770000			63705	14536	46492	46853	62063	62063					0.07658595265365875
YLQPKLLGI	9	Unmodified	_YLQPKLLGI_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	A375_MHC_IP_R1	1	523.225830078125	2	522.826235	1043.63792	-0.30701	-0.00016051	-0.31979	-0.0001672	-0.6268	-0.00032771	522.8259138100568	93.071	0.81487	93.071	92.769	93.584	0					30	15	3	0	0	0	0.047455	1	34186	34186		88.904	50.93	1	6269000			63706	7927	46493	46854	62064	62064					0.11784380896460789
YLQPKLLGI	9	Unmodified	_YLQPKLLGI_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	A375_MHC_IP_R2	2	523.2265625	2	522.826235	1043.63792	-0.48569	-0.00025393	-0.22945	-0.00011996	-0.71514	-0.00037389	522.8261533423681	92.071	0.55456	92.81	92.534	93.089	0.73902					18	10	2	0	0	0	0.040439	1	35003	35003		92.822	65.938	1	4084600			63707	7927	46493	46854	62065	62065					0.11784380896460789
YLQPPFPNV	9	Unmodified	_YLQPPFPNV_					0	0	0		ENST00000590815.5_1_18:44662751-44663638:-|nuORF	ENST00000590815.5_1_18:44662751-44663638:-|nuORF	ENST00000590815.5_1_18:44662751-44663638:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	538.2094116210938	2	537.784567	1073.55458	-0.72077	-0.00038762	-1.2538	-0.00067426	-1.9745	-0.0010619	537.783790152832	61.063	0.25436	61.063	60.871	61.126	0					7	4	2	0	0	0	0.71541	1	21989	21989		11.64	3.4848	1	1054200			63708	13791	46494	46855	62066	62066					0.020746444486121618
YLQPPFPNV	9	Unmodified	_YLQPPFPNV_					0	0	0		ENST00000590815.5_1_18:44662751-44663638:-|nuORF	ENST00000590815.5_1_18:44662751-44663638:-|nuORF	ENST00000590815.5_1_18:44662751-44663638:-|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	537.784567	1073.55458	-1.1615	-0.00062463	-2.4442	-0.0013145	-3.6057	-0.0019391	537.782986409996	60.694	0.30404	61.439	61.211	61.515	0.74503	0.18781	-0.00073291	NaN	11.64	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1944600			63709	13791	46494	46855							0.020746444486121618
YLQRVLQNCP	10	Unmodified	_YLQRVLQNCP_					0	0	0		nc|ENSG00000186998|Q96A84-2|EMID1;nc|ENSG00000186998|Q96A84|EMID1;ENSG00000186998|ENST00000334018|EMID1	nc|ENSG00000186998|Q96A84-2|EMID1	nc|ENSG00000186998|Q96A84-2|EMID1	MSMS	A375_MHC_IP_R2	2	411.9520568847656	3	411.885135	1232.63358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.57	1	64.31	63.81	64.81	0.74022								0	0	0	0.15435	1	24104	24104		3.5871	0	1				63710	8797	46495	46856	62067	62067					0.026565484112779814
YLQTLNSEN	9	Unmodified	_YLQTLNSEN_					0	0	0			REV__nc|ENSG00000137941|Q6ZT98-2|TTLL7	REV__nc|ENSG00000137941|Q6ZT98-2|TTLL7	MSMS	A375_MHC_IP_R2	2	541.1784057617188	2	541.261653	1080.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.918	1	80.662	80.162	81.162	0.74474								0	0	0	0.1493	1	30338	30338		22.736	0	1		+		63711	19048	46496	46857	62068	62068					-0.028280455242793323
YLRDALPEY	9	Unmodified	_YLRDALPEY_					0	0	0		ENSG00000115364|ENST00000393909|MRPL19	ENSG00000115364|ENST00000393909|MRPL19	ENSG00000115364|ENST00000393909|MRPL19	MULTI-SECPEP	A375_MHC_IP_R1	1	570.6714477539062	2	570.290214	1138.56587	-0.18219	-0.0001039	-0.53255	-0.00030371	-0.71474	-0.00040761	570.2903090881084	62.653	0.41087	62.653	62.351	62.762	0					12	7	2	0	0	0	0.60917	1	22670	22670		19.257	12.534	1	1385300			63712	3303	46497	46858	62069	62069					0.0021342175209611014
YLRDLPEPV	9	Unmodified	_YLRDLPEPV_					0	0	0		nc|ENSG00000163219|P42331-5|ARHGAP25;nc|ENSG00000163219|P42331-3|ARHGAP25;nc|ENSG00000163219|P42331-6|ARHGAP25;nc|ENSG00000163219|P42331|ARHGAP25;ENSG00000163219|ENST00000409202|ARHGAP25;ARHGAP25|p.P249S|1|0.39|ENSG00000163219|chr2:68813357-68813357|C/T|missense_variant;ENST00000488795.1_1_2:69034406-69043495:+|nuORF;nc|ENSG00000163219|P42331-2|ARHGAP25	nc|ENSG00000163219|P42331-5|ARHGAP25	nc|ENSG00000163219|P42331-5|ARHGAP25	MULTI-SECPEP	A375_MHC_IP_R2	2	551.681396484375	2	551.300581	1100.58661	-1.0191	-0.00056185	-0.27334	-0.00015069	-1.2925	-0.00071254	551.8020196236718	72.041	0.80766	72.775	72.264	73.071	0.73421					27	15	3	0	0	0	0.6191	1	27289	27289		18.373	18.373	1	1680200			63713	6639	46498	46859	62070	62070					0.04034012131751297
YLRDLPEPV	9	Unmodified	_YLRDLPEPV_					0	0	0		nc|ENSG00000163219|P42331-5|ARHGAP25;nc|ENSG00000163219|P42331-3|ARHGAP25;nc|ENSG00000163219|P42331-6|ARHGAP25;nc|ENSG00000163219|P42331|ARHGAP25;ENSG00000163219|ENST00000409202|ARHGAP25;ARHGAP25|p.P249S|1|0.39|ENSG00000163219|chr2:68813357-68813357|C/T|missense_variant;ENST00000488795.1_1_2:69034406-69043495:+|nuORF;nc|ENSG00000163219|P42331-2|ARHGAP25	nc|ENSG00000163219|P42331-5|ARHGAP25	nc|ENSG00000163219|P42331-5|ARHGAP25	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	551.300581	1100.58661	-0.4648	-0.00025625	-0.095146	-5.2454E-05	-0.55995	-0.0003087	551.300467803108	72.87	0.76117	72.87	72.423	73.184	0	0.047531	5.2767E-05	NaN	18.373	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1859300			63714	6639	46498	46859							0.04034012131751297
YLRKAAELLGS	11	Unmodified	_YLRKAAELLGS_					0	0	0		tr|U7SP84|U7SP84_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01765PE=4SV=1	tr|U7SP84|U7SP84_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01765PE=4SV=1	tr|U7SP84|U7SP84_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01765PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	407.971435546875	3	407.571434	1219.69247	0.082975	3.3818E-05	0.39762	0.00016206	0.48059	0.00019588	407.9059474279781	42.667	0.50671	43.44	43.218	43.724	0.7724					17	9	3	0	0	0	0.7328	1	15892	15892		6.2344	0.042509	1	3130700			63715	29572	46499	46860	62071	62071					0.09141347977219993
YLRKAAELLGS	11	Unmodified	_YLRKAAELLGS_					0	0	0		tr|U7SP84|U7SP84_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01765PE=4SV=1	tr|U7SP84|U7SP84_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01765PE=4SV=1	tr|U7SP84|U7SP84_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01765PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		3	407.571434	1219.69247	-0.18089	-7.3726E-05	1.1896	0.00048485	1.0087	0.00041112	407.5719726904236	43.667	0.45831	43.667	43.451	43.909	0	0.11383	0.00071606	NaN	6.2344	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2179300			63716	29572	46499	46860							0.09141347977219993
YLRKKLRL	8	Unmodified	_YLRKKLRL_					0	0	0		ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	MULTI-SECPEP	A375_MHC_IP_R2	2	1089.2178955078125	1	1089.72551	1088.71823	0.098761	0.00010762	-4.4777	-0.0048795	-4.379	-0.0047719	1090.7213078381028	123.29	0.45332	123.67	123.48	123.93	0.37661					11	8	2	0	0	0	0.972	1	47472	47472		2.8892	0	1	28350000			63717	4982	46500	46861	62072	62072					0.1774228701017364
YLRKLGLYR	9	Unmodified	_YLRKLGLYR_					0	0	0		ENSG00000164164|ENST00000447906|OTUD4	ENSG00000164164|ENST00000447906|OTUD4	ENSG00000164164|ENST00000447906|OTUD4	MSMS	A375_MHC_IP_R1	1	591.7593994140625	2	591.361308	1180.70806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.64	1	139.64	139.14	140.14	0								0	0	0	0.15486	1	53664	53664		1.8442	0	1				63718	6793	46501	46862	62073	62073					0.12493679284943937
YLRKNFEQDP	10	Unmodified	_YLRKNFEQDP_					0	0	0		nc|ENSG00000156687|Q6UXZ4-2|UNC5D;ENSG00000156687|ENST00000404895|UNC5D	nc|ENSG00000156687|Q6UXZ4-2|UNC5D	nc|ENSG00000156687|Q6UXZ4-2|UNC5D	MULTI-MSMS	A375_MHC_IP_R2	2	1309.7171630859375	1	1309.65353	1308.64625	0.28021	0.00036698	-3.236	-0.004238	-2.9558	-0.003871	1309.6484433815713	123.33	0.20109	123.71	123.58	123.78	0.3766					5	3	2	0	0	0	0.71245	1	47359	47359		6.7232	0.99131	1	19597000			63719	6205	46502	46863	62074	62074					0.004272830751233414
YLRKTRGYL	9	Unmodified	_YLRKTRGYL_					0	0	0		ENSG00000196862|ENST00000408999|RGPD4	ENSG00000196862|ENST00000408999|RGPD4	ENSG00000196862|ENST00000408999|RGPD4	MULTI-MSMS	A375_MHC_IP_R1	1	390.9645080566406	3	390.564502	1168.67168	-0.2939	-0.00011479	-0.15296	-5.974E-05	-0.44686	-0.00017453	390.56460824980815	29.277	0.40775	29.277	28.945	29.353	0					12	7	2	0	0	0	0.52905	1	9152	9152		18.373	3.1246	1	5368700			63720	9090	46503	46864	62075	62075					0.0940880238824775
YLRLKFLI	8	Unmodified	_YLRLKFLI_					0	0	0		ENSG00000156299|ENST00000541036|TIAM1	ENSG00000156299|ENST00000541036|TIAM1	ENSG00000156299|ENST00000541036|TIAM1	MSMS	A375_MHC_IP_R1	1	533.7295532226562	2	533.344595	1064.67464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.61	1	144.61	144.11	145.11	0								0	0	0	0.16876	1	55451	55451		0.79363	0	1				63721	6186	46504	46865	62076	62076					0.1448867751303169
YLRNNEIF	8	Unmodified	_YLRNNEIF_					0	0	0			REV__nc|ENSG00000274391|P56180-4|TPTE	REV__nc|ENSG00000274391|P56180-4|TPTE	MULTI-SECPEP	A375_MHC_IP_R2	2	534.1737060546875	2	534.777274	1067.53999	-1.3084	-0.00069972	-1.2623	-0.00067503	-2.5707	-0.0013748	534.7772799971265	33.873	0.35415	34.625	34.399	34.753	0.75225					9	6	2	0	0	0	0.8957	1	12133	12133		28.487	9.0478	1	1777600	+		63722	22957	46505	46866	62077	62077					0.008925723004722386
YLRPVKKPKI	10	Unmodified	_YLRPVKKPKI_					0	0	0		ENSG00000137413|ENST00000372977|TAF8;nc|ENSG00000137413|Q7Z7C8-2|TAF8	ENSG00000137413|ENST00000372977|TAF8	ENSG00000137413|ENST00000372977|TAF8	MSMS	A375_MHC_IP_R2	2	621.4782104492188	2	621.408258	1240.80196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.124	1	85.86	85.36	86.36	0.73601								0	0	0	0.15585	1	32361	32361		1.8442	0.19162	1				63723	4881	46506	46867	62078	62078					0.1911939838721537
YLRQKLTQLL	10	Unmodified	_YLRQKLTQLL_					0	0	0			REV__ENST00000374902.8_1_9:103111467-103111593:-|nuORF	REV__ENST00000374902.8_1_9:103111467-103111593:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	425.9714050292969	3	425.930962	1274.77106	-0.20054	-8.5417E-05	-0.53359	-0.00022727	-0.73413	-0.00031269	425.93066643973316	27.849	0.30395	28.528	28.351	28.655	0.67857					11	5	3	0	0	0	0.62871	1	9528	9528		18.721	8.957	1	3153600	+		63724	24118	46507	46868	62079	62079					0.14466200282345199
YLRRRRRRRVV	11	Unmodified	_YLRRRRRRRVV_					0	0	0			REV__ENST00000554273.1_1_14:50998823-50999316:-|nuORF	REV__ENST00000554273.1_1_14:50998823-50999316:-|nuORF	MSMS	A375_MHC_IP_R2	2	793.5084228515625	2	793.508558	1585.00256	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.499	1	82.241	81.741	82.741	0.74293								0	0	0	0.1636	1	30950	30950		0	0	1		+		63725	26077	46508	46869	62080	62080					0.23346105547216212
YLRSMIPHL	9	Unmodified	_YLRSMIPHL_					0	0	0		ENST00000462589.1_1_1:192544922-192545496:+|nuORF;ENST00000498352.1_1_1:192544922-192545979:+|nuORF;nc|ENSG00000090104|Q08116-2|RGS1;ENSG00000090104|ENST00000367459|RGS1	ENST00000462589.1_1_1:192544922-192545496:+|nuORF	ENST00000462589.1_1_1:192544922-192545496:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	377.27679443359375	3	377.211071	1128.61138	-0.46015	-0.00017357	0.7281	0.00027465	0.26795	0.00010107	377.2114744474928	37.017	1.0647	37.788	37.056	38.12	0.7709					38	20	3	0	0	0	0.75466	1	13489	13489		4.897	0	1	33046000			63726	1946	46509	46870	62081	62081					0.0522236873350721
YLRTRRRP	8	Unmodified	_YLRTRRRP_					0	0	0			REV__ENST00000510379.1_1_4:148653256-148653571:+|nuORF	REV__ENST00000510379.1_1_4:148653256-148653571:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	1118.0694580078125	1	1117.67012	1116.66284	-0.28708	-0.00032086	0.096519	0.00010788	-0.19056	-0.00021298	1117.6699462412769	149.53	1.7	149.53	148.26	149.96	0					90	53	3	0	0	0	0.77861	1	57048	57048		0	0	1	287150	+		63727	25600	46510	46871	62082	62082					0.10917873542439338
YLRWQGYLF	9	Unmodified	_YLRWQGYLF_					0	0	0			REV__ENSG00000187513|ENST00000342280|GJA4	REV__ENSG00000187513|ENST00000342280|GJA4	MSMS	A375_MHC_IP_R2	2	623.1143188476562	2	623.324391	1244.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.799	1	78.542	78.042	79.042	0.74293								0	0	0	0.1521	1	29543	29543		18.135	4.6271	1		+		63728	22023	46511	46872	62083	62083					0.021697111225876142
YLSDDEDML	9	Unmodified	_YLSDDEDML_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2;ENST00000439717.2_1_1:22216375-22222731:-|nuORF;HSPG2|p.D584Pfs*14|1|0.1|ENSG00000142798|chr1:21881400-21881407|GACAGGTC/-|frameshift_variant	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	A375_MHC_IP_R2	2	551.126708984375	2	550.726255	1099.43796	-0.70668	-0.00038919	0.63469	0.00034954	-0.071985	-3.9644E-05	550.7264569700877	84.13	0.56412	84.87	84.458	85.022	0.73962					14	10	2	0	0	0	0.76187	1	31959	31959		11.64	11.64	1	2164100			63729	5332	46512	46873	62084	62084					-0.10778506624114925
YLSDNVHLV	9	Unmodified	_YLSDNVHLV_					0	0	0		ENSG00000105401|ENST00000222005|CDC37	ENSG00000105401|ENST00000222005|CDC37	ENSG00000105401|ENST00000222005|CDC37	MULTI-SECPEP	A375_MHC_IP_R1	1	530.6231079101562	2	530.277106	1058.53966	-0.67292	-0.00035684	0.37131	0.0001969	-0.30162	-0.00015994	530.2774016335981	65.279	0.50795	65.279	64.954	65.462	0					17	9	2	0	0	0	0.24548	1	23609	23609		43.858	11.553	1	3945400			63730	2601	46513	46874	62085	62085					0.012731525806202626
YLSDNVHLV	9	Unmodified	_YLSDNVHLV_					0	0	0		ENSG00000105401|ENST00000222005|CDC37	ENSG00000105401|ENST00000222005|CDC37	ENSG00000105401|ENST00000222005|CDC37	MULTI-SECPEP	A375_MHC_IP_R2	2	530.6765747070312	2	530.277106	1058.53966	-0.53361	-0.00028296	0.022136	1.1738E-05	-0.51147	-0.00027122	530.2772602929164	64.519	0.56129	65.26	64.902	65.463	0.74023					17	10	2	0	0	0	0.35487	1	24433	24433		43.858	5.7071	1	3389100			63731	2601	46513	46874	62086	62086					0.012731525806202626
YLSEATIGL	9	Unmodified	_YLSEATIGL_					0	0	0		ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	MULTI-SECPEP	A375_MHC_IP_R1	1	965.8699340820312	1	966.514239	965.506963	0.20127	0.00019453	0.14575	0.00014087	0.34702	0.0003354	966.5142953150972	97.078	0.85956	97.078	96.781	97.641	0					32	16	3	0	0	0	0.023756	1	35721	35721		71.134	12.455	1	10832000			63732	9864	46514	46875	62087	62087					0.02282945457761798
YLSEATIGL	9	Unmodified	_YLSEATIGL_					0	0	0		ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	MULTI-MSMS	A375_MHC_IP_R2	2	967.2498168945312	1	966.514239	965.506963	-0.10427	-0.00010078	0.20539	0.00019851	0.10112	9.7734E-05	966.5143202425996	96.334	0.86044	97.084	96.754	97.615	0.75045					34	16	3	0	0	0	0.0098824	2	36571	36571;36711		117.6	20.524	1	12583000			63733	9864	46514	46875	62088;62089	62088					0.02282945457761798
YLSEKVLAA	9	Unmodified	_YLSEKVLAA_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-SECPEP	A375_MHC_IP_R1	1	497.68408203125	2	497.2844	992.554247	-0.3549	-0.00017649	0.13517	6.722E-05	-0.21973	-0.00010927	497.2843997630828	50.867	0.91355	50.867	50.459	51.373	0					43	17	4	0	0	0	0.046478	1	17979	17979		92.653	17.724	1	17851000			63734	8584	46515	46876	62090	62090					0.05767224728754172
YLSEKVLAA	9	Unmodified	_YLSEKVLAA_					0	0	0		ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2	ENSG00000184432|ENST00000333188|COPB2	ENSG00000184432|ENST00000333188|COPB2	MULTI-SECPEP	A375_MHC_IP_R2	2	497.6839904785156	2	497.2844	992.554247	-0.72149	-0.00035879	-0.10505	-5.2238E-05	-0.82654	-0.00041103	497.2843936515211	49.981	1.068	50.735	50.344	51.412	0.75406					62	20	5	0	0	0	0.061442	1	18750	18750		82.529	17.294	1	18222000			63735	8584	46515	46876	62091	62091					0.05767224728754172
YLSERYAELY	10	Unmodified	_YLSERYAELY_					0	0	0		ENSG00000188483|ENST00000372491|IER5L;nc|ENSG00000188483|Q5T953-2|IER5L	ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	MULTI-MSMS	A375_MHC_IP_R1	1	654.5205688476562	2	653.819335	1305.62412	-0.81205	-0.00053093	0.51558	0.0003371	-0.29647	-0.00019384	653.8196113700558	67.929	0.35345	67.929	67.754	68.108	0					12	6	2	0	0	0	0.39901	1	24633	24633		34.222	4.3811	1	2712700			63736	8908	46516	46877	62092	62092					-0.016469413932782118
YLSETVSNA	9	Unmodified	_YLSETVSNA_					0	0	0		ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	MULTI-SECPEP	A375_MHC_IP_R1	1	492.4775085449219	2	492.237647	982.460741	-0.20927	-0.00010301	-0.19419	-9.5586E-05	-0.40345	-0.0001986	492.237546381386	40.584	0.60874	40.584	40.254	40.863	0					17	11	2	0	0	0	0.3607	1	14001	14001		26.884	20.16	1	3006900			63737	4962	46517	46878	62093	62093					-0.031191194443181303
YLSETVSNA	9	Unmodified	_YLSETVSNA_					0	0	0		ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	MULTI-SECPEP	A375_MHC_IP_R1	1	983.8681030273438	1	983.468017	982.460741	0.29868	0.00029374	-0.28223	-0.00027757	0.016444	1.6172E-05	983.467808547317	40.597	0.40736	40.597	40.355	40.762	0					15	7	3	0	0	0	0.67483	1	14010	14010		20.454	8.8133	1	2659000			63738	4962	46517	46878	62094	62094					-0.031191194443181303
YLSETVSNA	9	Unmodified	_YLSETVSNA_					0	0	0		ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	MULTI-SECPEP	A375_MHC_IP_R2	2	492.6373291015625	2	492.237647	982.460741	-0.56201	-0.00027664	-0.27796	-0.00013682	-0.83997	-0.00041347	492.23742323110525	39.876	0.55873	40.651	40.371	40.93	0.77451					16	10	2	0	0	0	0.07754	1	14770	14770		64.236	31.931	1	3891400			63739	4962	46517	46878	62095	62095					-0.031191194443181303
YLSETVSNA	9	Unmodified	_YLSETVSNA_					0	0	0		ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	MULTI-MATCH	A375_MHC_IP_R2	2		1	983.468017	982.460741	-0.046032	-4.5271E-05	0.1918	0.00018863	0.14577	0.00014336	983.4675594151454	39.826	0.40633	40.601	40.422	40.828	0.77451	0.0020704	0.0002937	NaN	20.454	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2303300			63740	4962	46517	46878							-0.031191194443181303
YLSGIAHFL	9	Unmodified	_YLSGIAHFL_					0	0	0		ENSG00000165688|ENST00000371717|PMPCA;ENST00000371720.5_1_9:139305120-139310743:+|nuORF	ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	MULTI-SECPEP	A375_MHC_IP_R2	2	511.1780090332031	2	510.779285	1019.54402	-0.56785	-0.00029005	-1.4099	-0.00072015	-1.9778	-0.0010102	510.7783196785435	100.49	0.56361	101.25	101.03	101.6	0.76278					17	10	2	0	0	0	0.10216	1	38153	38153		67.035	46.164	1	2162300			63741	6980	46518	46879	62096	62096					0.03502661794186679
YLSIYRLFKLL	11	Unmodified	_YLSIYRLFKLL_					0	0	0			REV__ENST00000562237.5_1_16:69200987-69202772:+|nuORF	REV__ENST00000562237.5_1_16:69200987-69202772:+|nuORF	MSMS	A375_MHC_IP_R1	1	477.02337646484375	3	476.958629	1427.85406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.59	1	141.59	141.09	142.09	0								0	0	0	0.16351	1	54344	54344		0.45452	0	1		+		63742	26185	46519	46880	62097	62097					0.1572451701031241
YLSKIIPAL	9	Unmodified	_YLSKIIPAL_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-SECPEP	A375_MHC_IP_R1	1	509.72039794921875	2	509.320786	1016.62702	-0.58482	-0.00029786	0.023872	1.2158E-05	-0.56094	-0.0002857	509.32074053353244	94.72	0.86646	94.72	94.446	95.312	0					33	16	3	0	0	0	0.061442	1	34819	34819		82.529	36.508	1	4160600			63743	2993	46520	46881	62098	62098					0.11936978522169284
YLSKIIPAL	9	Unmodified	_YLSKIIPAL_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-MSMS	A375_MHC_IP_R2	2	509.72052001953125	2	509.320786	1016.62702	-0.5843	-0.0002976	-0.23479	-0.00011958	-0.81909	-0.00041718	509.3205672649743	93.878	0.6572	94.623	94.262	94.919	0.74473					30	12	3	0	0	0	0.012843	1	35625	35625		92.653	32.579	1	3779900			63744	2993	46520	46881	62099	62099					0.11936978522169284
YLSPESDHDTV	11	Unmodified	_YLSPESDHDTV_					0	0	0		nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-3|NLRC5;nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-MSMS	A375_MHC_IP_R1	1	632.1803588867188	2	631.780407	1261.54626	-0.60419	-0.00038172	0.47034	0.00029715	-0.13385	-8.4563E-05	631.7804327380976	57.278	0.30725	57.278	57.159	57.467	0					10	5	3	0	0	0	0.67989	1	20574	20574		17.113	0.96379	1	2871600			63745	5190	46521	46882	62100	62100					-0.07404999049322214
YLSPESDHDTV	11	Unmodified	_YLSPESDHDTV_					0	0	0		nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-3|NLRC5;nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-MSMS	A375_MHC_IP_R2	2	632.1795043945312	2	631.780407	1261.54626	-1.2129	-0.00076631	0.79203	0.00050039	-0.42091	-0.00026592	631.7811023409581	56.632	0.30618	57.382	57.203	57.51	0.75015					8	5	2	0	0	0	0.60747	1	21402	21402		22.736	4.5899	1	2458200			63746	5190	46521	46882	62101	62101					-0.07404999049322214
YLSQDTVSV	9	Unmodified	_YLSQDTVSV_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	A375_MHC_IP_R1	1	506.6529541015625	2	506.253297	1010.49204	-0.41039	-0.00020776	-0.29951	-0.00015163	-0.7099	-0.00035939	506.2530391062341	61.043	0.86572	61.043	60.669	61.534	0					42	16	4	0	0	0	0.015701	2	21936	21936;22027		88.954	34.18	1	21466000			63747	3520	46522	46883	62102;62103	62102					-0.012785464102307742
YLSQDTVSV	9	Unmodified	_YLSQDTVSV_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	A375_MHC_IP_R1	1	1011.7376708984375	1	1011.49932	1010.49204	0.15649	0.00015829	-0.42616	-0.00043106	-0.26967	-0.00027277	1011.4987324616043	61.05	0.76374	61.05	60.719	61.483	0					42	14	4	0	0	0	0.0018976	1	22026	22026		145.13	66.98	1	51162000			63748	3520	46522	46883	62104	62104					-0.012785464102307742
YLSQDTVSV	9	Unmodified	_YLSQDTVSV_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	A375_MHC_IP_R2	2	505.6630859375	2	506.253297	1010.49204	-1.0391	-0.00052605	-0.17298	-8.757E-05	-1.2121	-0.00061362	506.2531263229228	60.35	0.96623	61.095	60.651	61.618	0.74503					51	17	4	0	0	0	0.037683	4	22831	22770;22786;22831;22844		69.105	25.278	1	28958000			63749	3520	46522	46883	62105;62106;62107;62108	62107					-0.012785464102307742
YLSQDTVSV	9	Unmodified	_YLSQDTVSV_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	A375_MHC_IP_R2	2	1011.2343139648438	1	1011.49932	1010.49204	-0.28711	-0.00029042	-0.54728	-0.00055357	-0.83439	-0.00084399	1011.4986548015199	60.312	0.76426	61.057	60.751	61.515	0.74503					43	14	4	0	0	0	0.0098926	1	22864	22864		118.07	43.139	1	46630000			63750	3520	46522	46883	62109	62109					-0.012785464102307742
YLSQPQPQPY	10	Unmodified	_YLSQPQPQPY_					0	0	0		ENST00000573807.5_1_17:7216558-7216813:-|nuORF;ENST00000571697.5_1_17:7216461-7217028:-|nuORF;nc|ENSG00000132522|Q13227-2|GPS2;ENSG00000132522|ENST00000380728|GPS2	ENST00000573807.5_1_17:7216558-7216813:-|nuORF	ENST00000573807.5_1_17:7216558-7216813:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	611.2008056640625	2	610.800946	1219.58734	-0.28137	-0.00017186	0.18921	0.00011557	-0.092152	-5.6287E-05	610.8011053273304	47.442	1.1178	47.442	47.055	48.173	0					32	21	2	0	0	0	0.87163	1	16712	16712		19.257	4.0085	1	12802000			63751	4418	46523	46884	62110	62110					-0.013671932191755332
YLSQPQPQPY	10	Unmodified	_YLSQPQPQPY_					0	0	0		ENST00000573807.5_1_17:7216558-7216813:-|nuORF;ENST00000571697.5_1_17:7216461-7217028:-|nuORF;nc|ENSG00000132522|Q13227-2|GPS2;ENSG00000132522|ENST00000380728|GPS2	ENST00000573807.5_1_17:7216558-7216813:-|nuORF	ENST00000573807.5_1_17:7216558-7216813:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	611.2003173828125	2	610.800946	1219.58734	-0.30659	-0.00018727	-0.053762	-3.2838E-05	-0.36035	-0.0002201	610.8009574233149	46.827	0.81553	47.588	47.206	48.022	0.76128					27	15	2	0	0	0	0.72086	1	17494	17494		30.637	15.798	1	10031000			63752	4418	46523	46884	62111	62111					-0.013671932191755332
YLSRREERLRQ	11	Unmodified	_YLSRREERLRQ_					0	0	0		ENSG00000187513|ENST00000342280|GJA4	ENSG00000187513|ENST00000342280|GJA4	ENSG00000187513|ENST00000342280|GJA4	MULTI-MSMS	A375_MHC_IP_R2	2	753.8193359375	2	753.418405	1504.82226	-0.77304	-0.00058242	1.1128	0.00083843	0.33979	0.000256	753.4199075939066	87.219	0.50558	87.952	87.712	88.218	0.733					17	9	3	0	0	0	0.73135	1	33166	33166		7.609	0	1	2746300			63753	8829	46524	46885	62112	62112					0.09003917309064491
YLSRREERLRQ	11	Unmodified	_YLSRREERLRQ_					0	0	0		ENSG00000187513|ENST00000342280|GJA4	ENSG00000187513|ENST00000342280|GJA4	ENSG00000187513|ENST00000342280|GJA4	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	753.418405	1504.82226	-0.5122	-0.0003859	1.3197	0.00099431	0.80752	0.0006084	753.4194932537836	87.802	0.40712	87.802	87.593	88	0	-0.07481	7.7686E-05	NaN	7.609	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3418900			63754	8829	46524	46885							0.09003917309064491
YLSRREERLRQ	11	Unmodified	_YLSRREERLRQ_					0	0	0		ENSG00000187513|ENST00000342280|GJA4	ENSG00000187513|ENST00000342280|GJA4	ENSG00000187513|ENST00000342280|GJA4	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	753.418405	1504.82226	-0.77304	-0.00058242	1.1128	0.00083843	0.33979	0.000256	753.4199075939066	87.219	0.50558	87.952	87.712	88.218	0.733	0.07481	-0.00023407	NaN	7.609	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2746300			63755	8829	46524	46885							0.09003917309064491
YLSSLQPRL	9	Unmodified	_YLSSLQPRL_					0	0	0		ENST00000488052.1_1_22:29927628-29932726:-|nuORF;ENST00000475187.5_1_22:29932576-29945100:-|nuORF;ENST00000358079.8_1_22:29924947-29938918:-|nuORF;ENSG00000100296|ENST00000490103|THOC5	ENST00000488052.1_1_22:29927628-29932726:-|nuORF	ENST00000488052.1_1_22:29927628-29932726:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	539.2081909179688	2	538.808574	1075.60259	-1.0713	-0.00057723	0.58243	0.00031382	-0.48887	-0.00026341	538.8088404907701	68.032	0.65701	68.032	67.704	68.361	0					21	12	2	0	0	0	0.31606	1	24652	24652		39.95	14.55	1	2854900			63756	2154	46525	46886	62113	62113					0.06781718368665679
YLSSLQPRL	9	Unmodified	_YLSSLQPRL_					0	0	0		ENST00000488052.1_1_22:29927628-29932726:-|nuORF;ENST00000475187.5_1_22:29932576-29945100:-|nuORF;ENST00000358079.8_1_22:29924947-29938918:-|nuORF;ENSG00000100296|ENST00000490103|THOC5	ENST00000488052.1_1_22:29927628-29932726:-|nuORF	ENST00000488052.1_1_22:29927628-29932726:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	539.2081298828125	2	538.808574	1075.60259	-0.88647	-0.00047764	-0.10861	-5.852E-05	-0.99508	-0.00053616	538.8085259438993	67.189	0.65973	67.925	67.546	68.205	0.73631					24	12	3	0	0	0	0.5212	1	25448	25448		32.786	8.7651	1	2459400			63757	2154	46525	46886	62114	62114					0.06781718368665679
YLTAMLPS	8	Unmodified	_YLTAMLPS_					0	0	0		nc|ENSG00000144452|Q86UK0-2|ABCA12;ENSG00000144452|ENST00000272895|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	MULTI-SECPEP	A375_MHC_IP_R2	2	894.9298095703125	1	895.459367	894.45209	-0.23584	-0.00021119	-0.31258	-0.0002799	-0.54842	-0.00049109	895.4594105022677	113.64	1.6222	114.35	113.82	115.44	0.70985					41	31	2	0	0	0	0.972	1	43094	43094		5.2307	0.47466	1	20374000			63758	5487	46526	46887	62115	62115					0.0006423538549142904
YLTAMLPS	8	Unmodified	_YLTAMLPS_					0	0	0		nc|ENSG00000144452|Q86UK0-2|ABCA12;ENSG00000144452|ENST00000272895|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	MULTI-MATCH	A375_MHC_IP_R1	1		1	895.459367	894.45209	0.29877	0.00026753	-0.64642	-0.00057885	-0.34766	-0.00031131	895.4593110617092	114.18	1.3717	114.18	113.7	115.07	0	-0.08189	-0.0002225	NaN	5.2307	40	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27335000			63759	5487	46526	46887							0.0006423538549142904
YLTATMTIEA	10	Unmodified	_YLTATMTIEA_					0	0	0			REV__nc|ENSG850|P63123|ERVK-18_pro	REV__nc|ENSG850|P63123|ERVK-18_pro	MSMS	A375_MHC_IP_R1	1	371.7298889160156	3	371.85473	1112.54236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.339	1	18.339	17.839	18.839	0								0	0	0	0.15642	1	4371	4371		0	0	1		+		63760	27575	46527	46888	62116	62116					-0.00940760076719016
YLTCSTHL	8	Unmodified	_YLTCSTHL_					0	0	0		ENSG00000279263|ENST00000623922|OR2L8;ENSG00000198128|ENST00000359959|OR2L3	ENSG00000279263|ENST00000623922|OR2L8	ENSG00000279263|ENST00000623922|OR2L8	MSMS	A375_MHC_IP_R2	2	469.15509033203125	2	469.226028	936.437503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.595	1	37.366	36.866	37.866	0.7709								0	0	0	0.16876	1	13350	13350		20.871	0	1				63761	9231	46528	46889	62117	62117					-0.03325836762644485
YLTDPQGLVLD	11	Unmodified	_YLTDPQGLVLD_					0	0	0		ENSG00000157353|ENST00000288078|FCSK;nc|ENSG00000157353|Q8N0W3-2|FCSK;ENST00000464499.5_1_16:70501260-70504246:+|nuORF	ENSG00000157353|ENST00000288078|FCSK	ENSG00000157353|ENST00000288078|FCSK	MULTI-MSMS	A375_MHC_IP_R2	2	617.2171630859375	2	617.321711	1232.62887	-0.55216	-0.00034086	0.055205	3.4079E-05	-0.49696	-0.00030678	617.3212932365296	68.612	1.4717	69.347	68.358	69.83	0.73511					44	28	2	0	0	0	0.56199	1	25781	25781		26.268	4.7312	1	3215100			63762	6239	46529	46890	62118	62118					0.021859427494746342
YLTEVERFV	9	Unmodified	_YLTEVERFV_					0	0	0			REV__ENST00000484301.5_2_1:47042245-47048513:-|nuORF	REV__ENST00000484301.5_2_1:47042245-47048513:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	577.673828125	2	578.305864	1154.59717	-0.40881	-0.00023642	0.063199	3.6548E-05	-0.34561	-0.00019987	578.3058529718309	97.119	1.0134	97.875	97.216	98.23	0.75587					36	19	3	0	0	0	0.67539	1	36873	36873		23.148	12.349	1	6006900	+		63763	16727	46530	46891	62119	62119					0.02605994786199517
YLTHDSPSV	9	Unmodified	_YLTHDSPSV_					0	0	0		ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	MULTI-SECPEP	A375_MHC_IP_R1	1	509.59521484375	2	509.745639	1017.47673	-0.41151	-0.00020977	0.15402	7.851E-05	-0.25749	-0.00013126	509.7458076350983	31.78	0.51121	31.78	31.616	32.127	0					15	9	2	0	0	0	0.20567	1	10238	10238		54.774	27.89	1	3718800			63764	3912	46531	46892	62120	62120					-0.03131413207427158
YLTHDSPSV	9	Unmodified	_YLTHDSPSV_					0	0	0		ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	MULTI-SECPEP	A375_MHC_IP_R2	2	509.17010498046875	2	509.745639	1017.47673	-0.7817	-0.00039847	0.1844	9.3995E-05	-0.59731	-0.00030448	509.7457232539756	31.128	0.56109	31.846	31.618	32.18	0.71857					14	10	2	0	0	0	0.28475	1	11023	11023		39.957	26.051	1	3809900			63765	3912	46531	46892	62121	62121					-0.03131413207427158
YLTKEDLRV	9	Unmodified	_YLTKEDLRV_					0	0	0		ENSG00000197747|ENST00000368811|S100A10;ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF	ENSG00000197747|ENST00000368811|S100A10	ENSG00000197747|ENST00000368811|S100A10	MULTI-SECPEP	A375_MHC_IP_R1	1	379.9483947753906	3	379.548518	1135.62372	0.019122	7.2579E-06	0.27304	0.00010363	0.29216	0.00011089	379.5486141079965	41.619	0.86745	41.619	41.164	42.032	0					36	16	4	0	0	0	0.48845	1	14371	14371		37.075	8.5801	1	14277000			63766	9191	46532	46893	62122	62122					0.061336836774898984
YLTKEDLRV	9	Unmodified	_YLTKEDLRV_					0	0	0		ENSG00000197747|ENST00000368811|S100A10;ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF	ENSG00000197747|ENST00000368811|S100A10	ENSG00000197747|ENST00000368811|S100A10	MULTI-SECPEP	A375_MHC_IP_R1	1	569.2181396484375	2	568.819138	1135.62372	-0.65385	-0.00037192	0.16839	9.5782E-05	-0.48546	-0.00027614	568.8192361357936	41.599	0.40896	41.599	41.419	41.828	0					16	7	3	0	0	0	0.15144	1	14384	14384		73.196	51.45	1	3766800			63767	9191	46532	46893	62123	62123					0.061336836774898984
YLTKEDLRV	9	Unmodified	_YLTKEDLRV_					0	0	0		ENSG00000197747|ENST00000368811|S100A10;ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF	ENSG00000197747|ENST00000368811|S100A10	ENSG00000197747|ENST00000368811|S100A10	MULTI-SECPEP	A375_MHC_IP_R2	2	379.94879150390625	3	379.548518	1135.62372	-0.14002	-5.3143E-05	0.21739	8.2508E-05	0.077368	2.9365E-05	379.54854136563154	40.841	0.71188	41.615	41.183	41.895	0.77451					34	13	4	0	0	0	0.35628	1	15104	15104		47.732	19.498	1	13240000			63768	9191	46532	46893	62124	62124					0.061336836774898984
YLTKEDLRV	9	Unmodified	_YLTKEDLRV_					0	0	0		ENSG00000197747|ENST00000368811|S100A10;ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF	ENSG00000197747|ENST00000368811|S100A10	ENSG00000197747|ENST00000368811|S100A10	MULTI-SECPEP	A375_MHC_IP_R2	2	569.2186279296875	2	568.819138	1135.62372	-0.54251	-0.00030859	-0.49578	-0.00028201	-1.0383	-0.0005906	568.818660873402	40.784	0.30496	41.559	41.438	41.743	0.77451					14	5	3	0	0	0	0.41439	1	15145	15145		55.235	20.833	1	4056800			63769	9191	46532	46893	62125	62125					0.061336836774898984
YLTKMQPMLNL	11	Unmodified	_YLTKMQPMLNL_					0	0	0			REV__ENST00000483189.1_1_13:111893629-111928079:+|nuORF	REV__ENST00000483189.1_1_13:111893629-111928079:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	676.7589721679688	2	676.359259	1350.70396	-0.57362	-0.00038797	-0.52897	-0.00035777	-1.1026	-0.00074574	676.3587489366582	84.619	0.50541	85.355	85.069	85.574	0.73602					23	9	3	0	0	0	0.59166	1	32154	32154		23.79	3.3752	1	4582900	+		63770	17226	46533	46894	62126	62126					0.042640856847128816
YLTLETLSKVV	11	Unmodified	_YLTLETLSKVV_					0	0	0		tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1	tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1	tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	633.785888671875	2	633.371204	1264.72785	-1.0116	-0.00064069	-3.3885	-0.0021462	-4.4001	-0.0027869	633.8713302966205	143.15	1.4483	143.15	142.54	143.98	0					41	28	3	0	0	0	0.73378	1	54770	54770		5.2969	0.39987	1	1624700			63771	29455	46534	46895	62127	62127					0.10607965714370948
YLTNDKFF	8	Unmodified	_YLTNDKFF_					0	0	0			REV__tr|U7SKV4|U7SKV4_FUSNUPolysaccharidechainlengthdeterminantN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01945PE=4SV=1	REV__tr|U7SKV4|U7SKV4_FUSNUPolysaccharidechainlengthdeterminantN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01945PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6598510742188	2	524.260925	1046.5073	-0.039567	-2.0743E-05	-1.8524	-0.00097115	-1.892	-0.0009919	524.2600562136294	113.32	1.063	113.32	112.64	113.7	0					33	20	3	0	0	0	0.78043	1	41510	41510		32.117	0	1	3726600	+		63772	28260	46535	46896	62128	62128					-0.014096348223802124
YLTNEGIAHL	10	Unmodified	_YLTNEGIAHL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R1	1	566.195556640625	2	565.795663	1129.57677	-0.45601	-0.00025801	0.70633	0.00039964	0.25032	0.00014163	565.7958958811522	64.825	0.50796	64.825	64.597	65.105	0					18	9	3	0	0	0	0.24526	1	23469	23469		69.105	40.61	1	3777300			63773	14788	46536	46897	62129	62129					0.017168241263561868
YLTNEGIQYL	10	Unmodified	_YLTNEGIQYL_					0	0	0		ENST00000480942.1_1_6:34392413-34392935:-|nuORF;ENST00000439253.1_1_9:90631298-90631598:+|nuORF;ENST00000408001.1_1_6:34712123-34712447:+|nuORF;chr6:34425221-34425583|472|34.49|0.0|21.72|-|ENST00000494077|RPS10-NUDT3,RPS10;ENST00000440748.1_1_7:37415149-37415623:+|nuORF;ENSG00000124614|ENST00000648437|RPS10	ENST00000480942.1_1_6:34392413-34392935:-|nuORF	ENST00000480942.1_1_6:34392413-34392935:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	607.7080688476562	2	607.308603	1212.60265	-0.27652	-0.00016793	-0.45821	-0.00027827	-0.73473	-0.00044621	607.3082496148744	101.07	0.70916	101.07	100.69	101.39	0					28	13	3	0	0	0	0.14129	2	37132	37132;37145		72.968	10.395	1	4425500			63774	497	46537	46898	62130;62131	62130					0.004856735780094823
YLTNEGIQYL	10	Unmodified	_YLTNEGIQYL_					0	0	0		ENST00000480942.1_1_6:34392413-34392935:-|nuORF;ENST00000439253.1_1_9:90631298-90631598:+|nuORF;ENST00000408001.1_1_6:34712123-34712447:+|nuORF;chr6:34425221-34425583|472|34.49|0.0|21.72|-|ENST00000494077|RPS10-NUDT3,RPS10;ENST00000440748.1_1_7:37415149-37415623:+|nuORF;ENSG00000124614|ENST00000648437|RPS10	ENST00000480942.1_1_6:34392413-34392935:-|nuORF	ENST00000480942.1_1_6:34392413-34392935:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	607.7075805664062	2	607.308603	1212.60265	-0.21087	-0.00012806	-0.11148	-6.7701E-05	-0.32235	-0.00019577	607.3083402983866	100.43	0.76626	101.2	100.78	101.54	0.76278					27	14	3	0	0	0	0.099365	1	38036	38036		81.89	16.655	1	4469500			63775	497	46537	46898	62132	62132					0.004856735780094823
YLTPERLW	8	Unmodified	_YLTPERLW_					0	0	0		ENSG00000142235|ENST00000600059|LMTK3	ENSG00000142235|ENST00000600059|LMTK3	ENSG00000142235|ENST00000600059|LMTK3	MULTI-SECPEP	A375_MHC_IP_R1	1	539.1720581054688	2	539.290017	1076.56548	-0.49869	-0.00026894	-0.068523	-3.6954E-05	-0.56721	-0.00030589	539.2898015162048	44.202	0.97139	44.202	43.603	44.575	0					25	18	2	0	0	0	0.95423	1	15514	15514		7.9102	0.62092	1	1703100			63776	5300	46538	46899	62133	62133					0.030260468229016624
YLTPLILTL	9	Unmodified	_YLTPLILTL_					0	0	0		ENST00000589448.5_1_19:19230741-19243387:-|nuORF;ENSG00000064545|ENST00000162044|TMEM161A;ENST00000591443.1_1_19:19230741-19231736:-|nuORF;ENST00000587406.5_1_19:19230741-19232328:-|nuORF;nc|ENSG00000064545|Q9NX61-2|TMEM161A	ENST00000589448.5_1_19:19230741-19243387:-|nuORF	ENST00000589448.5_1_19:19230741-19243387:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	524.017822265625	2	523.828443	1045.64233	-0.42486	-0.00022255	0.035708	1.8705E-05	-0.38915	-0.00020385	523.828383674978	134.58	0.20367	134.72	134.6	134.8	0.13901					7	3	3	0	0	0	0.55359	1	52917	52917		28.487	5.3384	1	1778900			63777	1352	46539	46900	62134	62134					0.12133845319385728
YLTPLILTL	9	Unmodified	_YLTPLILTL_					0	0	0		ENST00000589448.5_1_19:19230741-19243387:-|nuORF;ENSG00000064545|ENST00000162044|TMEM161A;ENST00000591443.1_1_19:19230741-19231736:-|nuORF;ENST00000587406.5_1_19:19230741-19232328:-|nuORF;nc|ENSG00000064545|Q9NX61-2|TMEM161A	ENST00000589448.5_1_19:19230741-19243387:-|nuORF	ENST00000589448.5_1_19:19230741-19243387:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	523.828443	1045.64233	-0.76497	-0.00040071	-0.11251	-5.8937E-05	-0.87748	-0.00045965	524.3300254542517	134.75	0.20364	134.75	134.62	134.83	0	0.011638	-7.0178E-05	NaN	36.044	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2234100			63778	1352	46539	46900							0.12133845319385728
YLTTTSGRY	9	Unmodified	_YLTTTSGRY_					0	0	0			REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2	REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MULTI-MSMS	A375_MHC_IP_R1	1	531.1881103515625	2	531.266739	1060.51892	-0.64405	-0.00034216	0.1462	7.7673E-05	-0.49784	-0.00026449	531.2667887923994	64.498	1.9308	64.498	63.99	65.921	0					64	37	3	0	0	0	0.63811	1	23610	23610		12.532	3.1841	1	31564000	+		63779	17302	46540	46901	62135	62135					-0.008914377990322464
YLTVPYRK	8	Unmodified	_YLTVPYRK_					0	0	0		ENST00000470730.5_1_X:67718978-67733354:+|nuORF	ENST00000470730.5_1_X:67718978-67733354:+|nuORF	ENST00000470730.5_1_X:67718978-67733354:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	519.985595703125	2	520.300384	1038.58622	-0.52676	-0.00027408	0.0011038	5.7431E-07	-0.52566	-0.0002735	520.8019390040587	86.929	0.5078	87.662	87.509	88.017	0.733					11	9	2	0	0	0	0.97021	1	33063	33063		10.824	5.5933	1	822950			63780	12344	46541	46902	62136	62136					0.06846637202556849
YLVDDLCLECL	11	Unmodified	_YLVDDLCLECL_					0	0	0			REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	MULTI-MSMS	A375_MHC_IP_R1	1	650.20361328125	2	649.803982	1297.59341	-0.58373	-0.00037931	0.27749	0.00018032	-0.30624	-0.000199	649.8040961432822	68.386	0.60947	68.386	68.108	68.717	0					13	11	2	0	0	0	0.54446	1	24810	24810		27.629	0	1	1360000	+		63781	18962	46542	46903	62137	62137					-0.04348179094176885
YLVEFSLLW	9	Unmodified	_YLVEFSLLW_					0	0	0			REV__ENST00000256379.9_1_14:71051394-71051526:-|nuORF	REV__ENST00000256379.9_1_14:71051394-71051526:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	584.9865112304688	2	585.3157	1168.61685	-0.51514	-0.00030152	3.2957	0.001929	2.7806	0.0016275	585.3191753472863	75.586	0.51181	76.327	76.078	76.589	0.74052					17	9	3	0	0	0	0.74169	1	28737	28737		11.64	0	1	1589200	+		63782	23147	46543	46904	62138	62138					0.039283707969616444
YLVEPLFTE	9	Unmodified	_YLVEPLFTE_					0	0	0		nc|ENSG00000205268|Q13946-2|PDE7A;ENSG00000205268|ENST00000401827|PDE7A	nc|ENSG00000205268|Q13946-2|PDE7A	nc|ENSG00000205268|Q13946-2|PDE7A	MULTI-MSMS	A375_MHC_IP_R1	1	1110.09814453125	1	1110.57175	1109.56448	0.11879	0.00013192	-0.72592	-0.00080619	-0.60714	-0.00067427	1111.5754099160436	125.63	0.15161	125.63	125.55	125.7	0					4	2	2	0	0	0	0.63811	1	47852	47852		12.532	0	1	13271000			63783	9504	46544	46905	62139	62139					0.014077876633564301
YLVMLVLPPG	10	Unmodified	_YLVMLVLPPG_					0	0	0		HECTD4|p.P538L|1|0.37|ENSG00000173064|chr12:112270357-112270357|G/A|missense_variant	HECTD4|p.P538L|1|0.37|ENSG00000173064|chr12:112270357-112270357|G/A|missense_variant	HECTD4|p.P538L|1|0.37|ENSG00000173064|chr12:112270357-112270357|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	1102.2177734375	1	1101.63767	1100.63039	-0.12996	-0.00014317	-2.689	-0.0029623	-2.819	-0.0031055	1102.639105972186	120.43	0.15128	120.43	120.3	120.45	0					4	2	2	0	0	0	0.94311	1	44584	44584		4.3292	0	1	9460900			63784	14104	46545	46906	62140	62140					0.08409905304529275
YLVPELDGV	9	Unmodified	_YLVPELDGV_					0	0	0		ENSG00000215305|ENST00000380445|VPS16	ENSG00000215305|ENST00000380445|VPS16	ENSG00000215305|ENST00000380445|VPS16	MULTI-SECPEP	A375_MHC_IP_R1	1	1004.3944091796875	1	1004.52989	1003.52261	0.39555	0.00039734	0.47292	0.00047506	0.86847	0.0008724	1004.530177569552	117.44	0.55689	117.44	117.21	117.76	0					17	10	2	0	0	0	0.040439	1	43059	43059		71.134	55.286	1	16976000			63785	9643	46546	46907	62141	62141					0.020992319748188493
YLVPELDGV	9	Unmodified	_YLVPELDGV_					0	0	0		ENSG00000215305|ENST00000380445|VPS16	ENSG00000215305|ENST00000380445|VPS16	ENSG00000215305|ENST00000380445|VPS16	MULTI-SECPEP	A375_MHC_IP_R2	2	1004.8178100585938	1	1004.52989	1003.52261	0.1679	0.00016866	0.25493	0.00025608	0.42283	0.00042474	1004.5299686191576	116.69	0.55862	117.35	117.07	117.63	0.65962					19	10	2	0	0	0	0.3213	1	44231	44231		46.021	27.886	1	25048000			63786	9643	46546	46907	62142	62142					0.020992319748188493
YLVPRAVLL	9	Unmodified	_YLVPRAVLL_					0	0	0		ENSG00000104783|ENST00000648319|KCNN4	ENSG00000104783|ENST00000648319|KCNN4	ENSG00000104783|ENST00000648319|KCNN4	MULTI-SECPEP	A375_MHC_IP_R1	1	522.190673828125	2	522.334227	1042.6539	-0.48613	-0.00025392	0.16572	8.6559E-05	-0.32041	-0.00016736	522.3343622524453	100.29	0.45685	100.29	99.975	100.43	0					10	8	2	0	0	0	0.43707	1	36812	36812		21.747	4.8044	1	965000			63787	2536	46547	46908	62143	62143					0.13428087133388544
YLVRQVFRSLQ	11	Unmodified	_YLVRQVFRSLQ_					0	0	0		ENST00000593183.2_1_19:16013215-16014022:-|nuORF	ENST00000593183.2_1_19:16013215-16014022:-|nuORF	ENST00000593183.2_1_19:16013215-16014022:-|nuORF	MSMS	A375_MHC_IP_R1	1	705.1270751953125	2	704.906611	1407.79867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.767	1	82.767	82.267	83.267	0								0	0	0	0.1629	1	30273	30273		3.5965	0.31518	1				63788	13824	46548	46909	62144	62144					0.11108103542574099
YLVRRKDP	8	Unmodified	_YLVRRKDP_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	A375_MHC_IP_R2	2	1046.77978515625	1	1046.61054	1045.60326	0.08181	8.5623E-05	2.914	0.0030499	2.9959	0.0031355	1046.6180772990344	120.37	0.25303	120.9	120.7	120.95	0.5321					5	4	2	0	0	0	0.77702	1	45900	45900		5.7604	1.0044	1	14767000			63789	5230	46549	46910	62145	62145					0.08228557808365622
YLVVGTSLVD	10	Unmodified	_YLVVGTSLVD_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	A375_MHC_IP_R2	2	533.6943969726562	2	533.294965	1064.57538	-0.54701	-0.00029172	-3.2515	-0.001734	-3.7985	-0.0020257	533.2937310107886	137.26	0.51447	137.34	137.09	137.61	0.083969					16	9	2	0	0	0	0.70651	1	53860	53860		9.3831	2.66	1	1816100	+		63790	20119	46550	46911	62146	62146					0.04567190037641922
YLVVGTSLVD	10	Unmodified	_YLVVGTSLVD_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-MATCH	A375_MHC_IP_R1	1		2	533.294965	1064.57538	-0.95642	-0.00051006	-3.1174	-0.0016625	-4.0739	-0.0021726	533.2936425681769	137.34	0.46382	137.34	137.13	137.59	0	0.00077964	7.413E-05	NaN	9.3831	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1654900	+		63791	20119	46550	46911							0.04567190037641922
YLVVGTSLVD	10	Unmodified	_YLVVGTSLVD_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	533.294965	1064.57538	-0.54701	-0.00029172	-3.2515	-0.001734	-3.7985	-0.0020257	533.2937310107886	137.26	0.51447	137.34	137.09	137.61	0.083969	-0.00077964	-6.8831E-05	NaN	9.3831	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1816100	+		63792	20119	46550	46911							0.04567190037641922
YLWGNQAGLW	10	Unmodified	_YLWGNQAGLW_					0	0	0			REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3	REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3	MSMS	A375_MHC_IP_R1	1	604.4100341796875	2	604.298373	1206.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.455	1	80.455	79.955	80.955	0								0	0	0	0.15256	1	29381	29381		12.532	0.89125	1		+		63793	19128	46551	46912	62147	62147					-0.012834522911362
YLWRMCLREET	11	Unmodified	_YLWRMCLREET_					0	0	0		ENST00000493340.5_1_7:139477017-139487169:+|nuORF	ENST00000493340.5_1_7:139477017-139487169:+|nuORF	ENST00000493340.5_1_7:139477017-139487169:+|nuORF	MSMS	A375_MHC_IP_R1	1	500.4746398925781	3	500.575973	1498.70609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.971	1	90.971	90.471	91.471	0								0	0	0	0.16307	1	33427	33427		1.1098	0.096179	1				63794	12680	46552	46913	62148	62148					-0.023314855774970056
YLWSAAASFL	10	Unmodified	_YLWSAAASFL_					0	0	0			REV__nc|ENSG00000056586|Q9HBD1-4|RC3H2	REV__nc|ENSG00000056586|Q9HBD1-4|RC3H2	MSMS	A375_MHC_IP_R2	2	564.6904907226562	2	564.78985	1127.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.8	1	127.06	126.56	127.56	0.26593								0	0	0	0.15283	1	49636	49636		11.64	1.4897	1		+		63795	27106	46553	46914	62149	62149					0.006466271030376447
YLWVVWIY	8	Unmodified	_YLWVVWIY_					0	0	0		ENST00000567478.5_1_16:19467998-19503571:+|nuORF;nc|ENSG00000103534|Q6UXY8-3|TMC5;nc|ENSG00000103534|Q6UXY8-4|TMC5;ENSG00000103534|ENST00000542583|TMC5	ENST00000567478.5_1_16:19467998-19503571:+|nuORF	ENST00000567478.5_1_16:19467998-19503571:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	571.5994262695312	2	571.307678	1140.6008	-0.3294	-0.00018819	-0.056423	-3.2235E-05	-0.38583	-0.00022043	571.3073823208398	67.121	0.50648	67.857	67.546	68.052	0.73631					10	9	2	0	0	0	0.972	1	25500	25500		6.3541	0	1	995790			63796	13571	46554	46915	62150	62150					0.036127093507275276
YLWWFEIMLWH	11	Unmodified	_YLWWFEIMLWH_					0	0	0			REV__TIMD4|p.L8H|1|0.14|ENSG00000145850|chr5:156963176-156963176|A/T|missense_variant	REV__TIMD4|p.L8H|1|0.14|ENSG00000145850|chr5:156963176-156963176|A/T|missense_variant	MSMS	A375_MHC_IP_R2	2	812.7899169921875	2	812.39449	1622.77443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.35	1	144.38	143.88	144.88	0.024414								0	0	0	0.16353	1	56389	56389		0.35063	0.043601	1		+		63797	28113	46555	46916	62151	62151					-0.012048729353182352
YLYAVGNK	8	Unmodified	_YLYAVGNK_					0	0	0			REV__ENSG00000109758|ENST00000382774|HGFAC	REV__ENSG00000109758|ENST00000382774|HGFAC	MULTI-MSMS	A375_MHC_IP_R2	2	464.6500549316406	2	464.25036	926.486168	-0.75353	-0.00034982	0.35558	0.00016508	-0.39794	-0.00018475	464.25033043159095	50.519	1.011	51.273	50.804	51.815	0.75406					31	19	3	0	0	0	0.75322	1	18959	18959		19.439	1.304	1	4394300	+	+	63798	17595	46556	46917	62152	62152					0.01998399868762135
YLYDLNHTL	9	Unmodified	_YLYDLNHTL_					0	0	0		ENSG00000110057|ENST00000227471|UNC93B1	ENSG00000110057|ENST00000227471|UNC93B1	ENSG00000110057|ENST00000227471|UNC93B1	MULTI-MSMS	A375_MHC_IP_R1	1	576.6900634765625	2	576.290214	1150.56587	-0.088793	-5.1171E-05	-0.14548	-8.3837E-05	-0.23427	-0.00013501	576.2898928136126	81.825	1.5693	81.825	81.455	83.024	0					62	30	4	0	0	0	0.0037351	1	29855	29855		137.42	91.403	1	34414000			63799	2913	46557	46918	62153	62153					-0.0033857824791994062
YLYDLNHTL	9	Unmodified	_YLYDLNHTL_					0	0	0		ENSG00000110057|ENST00000227471|UNC93B1	ENSG00000110057|ENST00000227471|UNC93B1	ENSG00000110057|ENST00000227471|UNC93B1	MULTI-MSMS	A375_MHC_IP_R2	2	576.6893310546875	2	576.290214	1150.56587	-0.27366	-0.00015771	-0.64986	-0.00037451	-0.92352	-0.00053221	576.2895880519677	81.061	1.3711	81.806	81.52	82.891	0.74473					60	26	5	0	0	0	0.0070829	1	30742	30742		131.27	82.922	1	33595000			63800	2913	46557	46918	62154	62154					-0.0033857824791994062
YLYDRLLRI	9	Unmodified	_YLYDRLLRI_					0	0	0		ENSG00000101003|ENST00000262460|GINS1	ENSG00000101003|ENST00000262460|GINS1	ENSG00000101003|ENST00000262460|GINS1	MULTI-MSMS	A375_MHC_IP_R1	1	409.3080749511719	3	408.908157	1223.70264	-0.020903	-8.5473E-06	0.40941	0.00016741	0.38851	0.00015886	408.9082805630661	93.508	0.45901	93.508	93.279	93.738	0					15	8	2	0	0	0	0.46357	2	34404	34358;34404		21.59	9.3495	1	1814800			63801	2243	46558	46919	62155;62156	62156					0.09973955702457715
YLYDRLLRI	9	Unmodified	_YLYDRLLRI_					0	0	0		ENSG00000101003|ENST00000262460|GINS1	ENSG00000101003|ENST00000262460|GINS1	ENSG00000101003|ENST00000262460|GINS1	MULTI-MATCH	A375_MHC_IP_R2	2		3	408.908157	1223.70264	0.089941	3.6778E-05	0.03386	1.3846E-05	0.1238	5.0623E-05	408.90807447030477	92.678	0.50652	93.417	93.14	93.646	0.73902	-0.045697	-0.00019607	NaN	21.59	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1386700			63802	2243	46558	46919							0.09973955702457715
YLYEPMWH	8	Unmodified	_YLYEPMWH_					0	0	0		ENSG00000147119|ENST00000276055|CHST7	ENSG00000147119|ENST00000276055|CHST7	ENSG00000147119|ENST00000276055|CHST7	MSMS	A375_MHC_IP_R2	2	569.7020263671875	2	569.754953	1137.49535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.903	1	66.641	66.141	67.141	0.73811								0	0	0	0.16876	1	24988	24988		10.183	1.438	1				63803	5659	46559	46920	62157	62157					-0.06789574837239343
YLYFFRLWHRK	11	Unmodified	_YLYFFRLWHRK_					0	0	0			REV__ENSG00000182087|ENST00000356663|TMEM259	REV__ENSG00000182087|ENST00000356663|TMEM259	MULTI-SECPEP	A375_MHC_IP_R2	2	543.6314697265625	3	543.633139	1627.87759	-0.68541	-0.00037261	-1.4999	-0.00081542	-2.1854	-0.001188	543.9663713807204	95.647	0.50839	96.398	96.144	96.653	0.75045					14	9	2	0	0	0	1.0012	1	36242	36242		0.40827	0.31342	1	2144700	+		63804	21672	46560	46921	62158	62158					0.08876375567479045
YLYMFDSF	8	Unmodified	_YLYMFDSF_					0	0	0			REV__ENST00000242059.9_1_7:29961055-29961148:-|nuORF	REV__ENST00000242059.9_1_7:29961055-29961148:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	543.198486328125	2	543.236061	1084.45757	-0.60916	-0.00033092	-0.46598	-0.00025314	-1.0751	-0.00058405	543.235874299711	64.195	0.60761	64.195	63.939	64.546	0					20	11	2	0	0	0	0.7758	1	23330	23330		10.183	1.5901	1	792740	+		63805	23096	46561	46922	62159	62159					-0.08128085822681896
YLYMFDSF	8	Unmodified	_YLYMFDSF_					0	0	0			REV__ENST00000242059.9_1_7:29961055-29961148:-|nuORF	REV__ENST00000242059.9_1_7:29961055-29961148:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	543.6351928710938	2	543.236061	1084.45757	-0.75946	-0.00041257	-0.85069	-0.00046212	-1.6101	-0.00087469	543.2357759404636	63.781	0.61053	64.521	64.038	64.648	0.74022					17	11	2	0	0	0	0.7758	1	24224	24224		10.183	1.5901	1	1438300	+		63806	23096	46561	46922	62160	62160					-0.08128085822681896
YLYNLNTLH	9	Unmodified	_YLYNLNTLH_					0	0	0			REV__PODN|p.A587Pfs*33|1|0.59|ENSG00000174348|chr1:53080827-53080827|C/-|frameshift_variant	REV__PODN|p.A587Pfs*33|1|0.59|ENSG00000174348|chr1:53080827-53080827|C/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	384.8787536621094	3	384.201229	1149.58186	0.24769	9.5164E-05	0.85018	0.00032664	1.0979	0.0004218	384.53587729184864	19.88	0.20358	19.88	19.725	19.928	0					5	3	2	0	0	0	0.76187	1	5009	5009		4.5289	0.94181	1	591940	+		63807	27816	46562	46923	62161	62161					0.013051279890078149
YLYPDITRL	9	Unmodified	_YLYPDITRL_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	MULTI-SECPEP	A375_MHC_IP_R1	1	577.7167358398438	2	577.316232	1152.61791	-0.077975	-4.5016E-05	0.16477	9.5124E-05	0.086795	5.0108E-05	577.3163171070034	97.111	1.0132	97.111	96.73	97.743	0					50	19	4	0	0	0	0.16764	1	35647	35647		60.074	20.117	1	47794000			63808	4326	46563	46924	62162	62162					0.047705851658292886
YLYPDITRL	9	Unmodified	_YLYPDITRL_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	MULTI-SECPEP	A375_MHC_IP_R2	2	576.744384765625	2	577.316232	1152.61791	-0.20521	-0.00011847	0.017355	1.0019E-05	-0.18786	-0.00010845	577.3161953585798	96.33	0.96049	97.081	96.754	97.715	0.75045					49	18	4	0	0	0	0.16764	1	36617	36617		51.63	11.672	1	43343000			63809	4326	46563	46924	62163	62163					0.047705851658292886
YLYQWSEF	8	Unmodified	_YLYQWSEF_					0	0	0			REV__ENSG00000127366|ENST00000247883|TAS2R5	REV__ENSG00000127366|ENST00000247883|TAS2R5	MULTI-MSMS	A375_MHC_IP_R1	1	568.20068359375	2	568.258382	1134.50221	0.18116	0.00010295	-1.973	-0.0011212	-1.7918	-0.0010182	568.255600611367	69.472	1.7758	69.472	68.565	70.341	0					121	34	7	0	0	0	0.76248	1	25308	25308		16.942	1.0951	1	23128000	+		63810	18417	46564	46925	62164	62164					-0.05965938685017136
YLYRIRKNL	9	Unmodified	_YLYRIRKNL_					0	0	0			REV__ENSG00000111639|ENST00000229238|MRPL51	REV__ENSG00000111639|ENST00000229238|MRPL51	MULTI-SECPEP	A375_MHC_IP_R2	2	620.2680053710938	2	619.87204	1237.72953	-0.72521	-0.00044953	-2.651	-0.0016433	-3.3762	-0.0020928	619.8695930082836	127.37	0.50744	127.64	127.41	127.92	0.26593					14	9	2	0	0	0	0.77834	1	50038	50038		4.756	0	1	7048100	+		63811	17679	46565	46926	62165	62165					0.12017064313681658
YLYRYRTMGNV	11	Unmodified	_YLYRYRTMGNV_					0	0	0		nc|ENSG00000183876|Q5FYB1-2|ARSI;ENSG00000183876|ENST00000328668|ARSI	nc|ENSG00000183876|Q5FYB1-2|ARSI	nc|ENSG00000183876|Q5FYB1-2|ARSI	MSMS	A375_MHC_IP_R2	2	718.561279296875	2	718.361179	1434.7078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.271	1	95.016	94.516	95.516	0.74474								0	0	0	0.16307	1	35828	35828		2.7352	1.2533	1				63812	8540	46566	46927	62166	62166					0.007838915027605253
YLYYYYKHYIA	11	Unmodified	_YLYYYYKHYIA_					0	0	0			REV__EXT1|p.H631Y|1|0.25|ENSG00000182197|chr8:117804886-117804886|G/A|missense_variant	REV__EXT1|p.H631Y|1|0.25|ENSG00000182197|chr8:117804886-117804886|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	520.6875610351562	3	520.590494	1558.74965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.457	1	71.457	70.957	71.957	0								0	0	0	0.16336	1	25962	25962		1.2148	0.70888	1		+		63813	26599	46567	46928	62167	62167					-0.007372295370487336
YMADRLLGV	9	Unmodified	_YMADRLLGV_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-SECPEP	A375_MHC_IP_R1	1	518.6766967773438	2	519.276052	1036.53755	-0.36075	-0.00018733	-1.1644	-0.00060466	-1.5252	-0.00079199	519.2758968084455	82.215	0.55835	82.215	81.911	82.469	0					27	9	4	0	0	0	0.46121	1	30032	30032		32.037	14.925	1	3419600			63814	1183	46568	46929	62168	62168					0.020744005711549107
YMADRLLGV	9	Oxidation (M)	_YM(Oxidation (M))ADRLLGV_		YM(1)ADRLLGV		YM(53)ADRLLGV	0	0	1		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-SECPEP	A375_MHC_IP_R2	2	527.6731567382812	2	527.273509	1052.53247	-0.64879	-0.00034209	0.29218	0.00015406	-0.35662	-0.00018803	527.273319507332	65.584	0.76318	66.322	65.968	66.731	0.73812					33	14	3	0	0	0	0.27114	1	24844	24844		53.404	39.498	1	3603300			63815	1183	46568	46930	62169	62169		21			0.008300967085460798
YMCRIIVYFMW	11	Unmodified	_YMCRIIVYFMW_					0	0	0		UQCC1|p.H177Y|2|0.34|ENSG00000101019|chr20:35347208-35347208|G/A|missense_variant	UQCC1|p.H177Y|2|0.34|ENSG00000101019|chr20:35347208-35347208|G/A|missense_variant	UQCC1|p.H177Y|2|0.34|ENSG00000101019|chr20:35347208-35347208|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	762.8641357421875	2	762.863654	1523.71276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.411	1	88.411	87.911	88.911	0								0	0	0	0.16331	1	32455	32455		1.4819	0	1				63816	30119	46569	46931	62170	62170					-0.028152639504924082
YMDDYIFTY	9	Unmodified	_YMDDYIFTY_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-MSMS	A375_MHC_IP_R1	1	616.1549072265625	2	615.754815	1229.49508	-0.2048	-0.00012611	-0.8871	-0.00054624	-1.0919	-0.00067235	615.754376476028	125.91	0.2494	125.91	125.75	126	0					9	4	3	0	0	0	0.05754	1	48054	48054		61.357	0	1	10385000			63817	6247	46570	46932	62171	62171					-0.110490393477221
YMDDYIFTY	9	Unmodified	_YMDDYIFTY_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-MSMS	A375_MHC_IP_R2	2	616.1541748046875	2	615.754815	1229.49508	-0.57579	-0.00035455	-0.99384	-0.00061196	-1.5696	-0.00096651	615.7542023904452	125.55	0.30185	125.85	125.72	126.02	0.2951					7	5	2	0	0	0	0.17328	1	49034	49034		39.957	0	1	11428000			63818	6247	46570	46932	62172	62172					-0.110490393477221
YMDDYIFTY	9	Oxidation (M)	_YM(Oxidation (M))DDYIFTY_		YM(1)DDYIFTY		YM(100)DDYIFTY	0	0	1		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-SECPEP	A375_MHC_IP_R1	1	624.1519775390625	2	623.752272	1245.48999	-0.3098	-0.00019324	-0.40157	-0.00025048	-0.71137	-0.00044372	623.7520309252913	111.58	0.71556	111.58	111.21	111.92	0					33	13	3	0	0	0	0.030624	1	40860	40860		100.37	73.488	1	7591200			63819	6247	46570	46933	62173	62173		335			-0.12293343210353669
YMDDYIFTY	9	Oxidation (M)	_YM(Oxidation (M))DDYIFTY_		YM(1)DDYIFTY		YM(82)DDYIFTY	0	0	1		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-SECPEP	A375_MHC_IP_R2	2	624.15234375	2	623.752272	1245.48999	-0.59207	-0.00036931	0.19227	0.00011993	-0.3998	-0.00024938	623.7523258089541	110.94	0.81487	111.67	111.19	112.01	0.73692					28	15	2	0	0	0	0.05755	1	41788	41788		81.613	39.519	1	6950500			63820	6247	46570	46933	62174	62174		335			-0.12293343210353669
YMDRGPGYSY	10	Oxidation (M)	_YM(Oxidation (M))DRGPGYSY_		YM(1)DRGPGYSY		YM(57)DRGPGYSY	0	0	1		ENST00000511959.1_1_4:5437650-5448758:+|nuORF;nc|ENSG00000152953|Q9NY57-2|STK32B;ENSG00000152953|ENST00000282908|STK32B	ENST00000511959.1_1_4:5437650-5448758:+|nuORF	ENST00000511959.1_1_4:5437650-5448758:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	613.1527709960938	2	612.753138	1223.49172	-0.63995	-0.00039213	-0.060838	-3.7279E-05	-0.70079	-0.00042941	612.7531151314158	30.706	0.60687	30.706	30.402	31.009	0					24	11	3	0	0	0	0.13045	1	9774	9774		57.108	30.839	1	4145000			63821	5993	46571	46934	62175	62175		321			-0.11108289401749971
YMDRGPGYSY	10	Oxidation (M)	_YM(Oxidation (M))DRGPGYSY_		YM(1)DRGPGYSY		YM(53)DRGPGYSY	0	0	1		ENST00000511959.1_1_4:5437650-5448758:+|nuORF;nc|ENSG00000152953|Q9NY57-2|STK32B;ENSG00000152953|ENST00000282908|STK32B	ENST00000511959.1_1_4:5437650-5448758:+|nuORF	ENST00000511959.1_1_4:5437650-5448758:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	613.1810913085938	2	612.753138	1223.49172	-0.75031	-0.00045975	0.066008	4.0447E-05	-0.6843	-0.00041931	612.7530979293812	30.079	0.71091	30.798	30.505	31.216	0.71857					26	13	3	0	0	0	0.44315	1	10531	10531		53.317	27.049	1	5205300			63822	5993	46571	46934	62176	62176		321			-0.11108289401749971
YMDRGPGYSY	10	Unmodified	_YMDRGPGYSY_					0	0	0		ENST00000511959.1_1_4:5437650-5448758:+|nuORF;nc|ENSG00000152953|Q9NY57-2|STK32B;ENSG00000152953|ENST00000282908|STK32B	ENST00000511959.1_1_4:5437650-5448758:+|nuORF	ENST00000511959.1_1_4:5437650-5448758:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	605.1548461914062	2	604.755681	1207.49681	-0.72372	-0.00043767	-0.0238	-1.4393E-05	-0.74752	-0.00045207	604.7557489796108	38.172	0.51249	38.946	38.687	39.2	0.77451					20	9	3	0	0	0	0.37567	1	14055	14055		35.612	10.621	1	2485500			63823	5993	46571	46935	62177	62177					-0.09863985539118403
YMDRGPGYSY	10	Unmodified	_YMDRGPGYSY_					0	0	0		ENST00000511959.1_1_4:5437650-5448758:+|nuORF;nc|ENSG00000152953|Q9NY57-2|STK32B;ENSG00000152953|ENST00000282908|STK32B	ENST00000511959.1_1_4:5437650-5448758:+|nuORF	ENST00000511959.1_1_4:5437650-5448758:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	604.755681	1207.49681	-0.72372	-0.00043767	-0.0238	-1.4393E-05	-0.74752	-0.00045207	604.7557489796108	38.172	0.51249	38.946	38.687	39.2	0.77451	0.082412	7.5776E-05	NaN	35.612	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2485500			63824	5993	46571	46935							-0.09863985539118403
YMDSYQTSSPA	11	Unmodified	_YMDSYQTSSPA_					0	0	0		nc|ENSG00000116833|O00482-4|NR5A2;nc|ENSG00000116833|O00482-2|NR5A2;ENSG00000116833|ENST00000367362|NR5A2	nc|ENSG00000116833|O00482-4|NR5A2	nc|ENSG00000116833|O00482-4|NR5A2	MULTI-MSMS	A375_MHC_IP_R2	2	625.6556396484375	2	625.255711	1248.49687	-0.9209	-0.0005758	0.66789	0.0004176	-0.25301	-0.0001582	625.2562760824163	44.873	0.51075	45.642	45.34	45.85	0.7691					22	9	3	0	0	0	0.67565	1	16739	16739		17.443	5.202	1	4952900			63825	3437	46572	46936	62178	62178					-0.11744030329782618
YMDYRGYSY	9	Unmodified	_YMDYRGYSY_					0	0	0		ENSG00000131778|ENST00000369258|CHD1L;nc|ENSG00000131778|Q86WJ1-4|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L;nc|ENSG00000131778|Q86WJ1-5|CHD1L	ENSG00000131778|ENST00000369258|CHD1L	ENSG00000131778|ENST00000369258|CHD1L	MULTI-MSMS	A375_MHC_IP_R1	1	609.6499633789062	2	609.250231	1216.48591	-0.24677	-0.00015034	0.31746	0.00019341	0.070691	4.3069E-05	609.7519394306557	53.654	0.50885	53.654	53.453	53.962	0					20	9	3	0	0	0	0.074562	1	19164	19164		55.235	40.653	1	2855600			63826	4350	46573	46937	62179	62179					-0.11367387913401217
YMDYRGYSY	9	Unmodified	_YMDYRGYSY_					0	0	0		ENSG00000131778|ENST00000369258|CHD1L;nc|ENSG00000131778|Q86WJ1-4|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L;nc|ENSG00000131778|Q86WJ1-5|CHD1L	ENSG00000131778|ENST00000369258|CHD1L	ENSG00000131778|ENST00000369258|CHD1L	MULTI-MSMS	A375_MHC_IP_R2	2	609.6494750976562	2	609.250231	1216.48591	-1.0324	-0.000629	-0.054516	-3.3214E-05	-1.0869	-0.00066221	609.2500770393059	53.116	0.50929	53.867	53.638	54.147	0.75105					15	9	2	0	0	0	0.058226	1	20050	20050		61.09	46.508	1	4357800			63827	4350	46573	46937	62180	62180					-0.11367387913401217
YMDYRGYSY	9	Oxidation (M)	_YM(Oxidation (M))DYRGYSY_		YM(1)DYRGYSY		YM(44)DYRGYSY	0	0	1		ENSG00000131778|ENST00000369258|CHD1L;nc|ENSG00000131778|Q86WJ1-4|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L;nc|ENSG00000131778|Q86WJ1-5|CHD1L	ENSG00000131778|ENST00000369258|CHD1L	ENSG00000131778|ENST00000369258|CHD1L	MULTI-SECPEP	A375_MHC_IP_R2	2	617.647216796875	2	617.247689	1232.48082	-0.76399	-0.00047157	0.35679	0.00022023	-0.4072	-0.00025134	617.247792269016	40.496	0.55957	41.271	40.98	41.54	0.77451					22	10	3	0	0	0	0.30133	1	15050	15050		43.982	26.869	1	2452500			63828	4350	46573	46938	62181	62181		227			-0.12611691776032785
YMEGNVRKV	9	Unmodified	_YMEGNVRKV_					0	0	0		ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	MULTI-SECPEP	A375_MHC_IP_R2	2	365.3130798339844	3	365.858698	1094.55426	-0.21284	-7.787E-05	0.77631	0.00028402	0.56347	0.00020615	365.85883824089666	19.277	0.40478	19.88	19.683	20.088	0.60308					16	7	3	0	0	0	0.60917	1	5893	5893		18.373	4.467	1	1621000			63829	7115	46574	46939	62182	62182					0.010769014571224034
YMFRGSLVQP	10	Unmodified	_YMFRGSLVQP_					0	0	0			REV__nc|ENSG00000110697|O00562-2|PITPNM1	REV__nc|ENSG00000110697|O00562-2|PITPNM1	MULTI-SECPEP	A375_MHC_IP_R2	2	400.29241943359375	3	399.874348	1196.60121	-0.29402	-0.00011757	2.1465	0.00085834	1.8525	0.00074077	400.2090543218926	38.033	0.36075	38.808	38.636	38.997	0.77451					9	6	2	0	0	0	0.88918	1	13927	13927		7.9454	0	1	1026800	+		63830	17636	46575	46940	62183	62183					0.010777610082641331
YMIAHITGL	9	Unmodified	_YMIAHITGL_					0	0	0		nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS;ENST00000581920.1_1_18:667730-672994:+|nuORF;nc|ENSG00000176890|P04818-3|TYMS;chr18:657947-669072|467|17.35|0.94|4.21|+|ENST00000323250|TYMS,TYMS	nc|ENSG00000176890|P04818-2|TYMS	nc|ENSG00000176890|P04818-2|TYMS	MULTI-SECPEP	A375_MHC_IP_R1	1	510.1726379394531	2	509.773145	1017.53174	-0.6352	-0.00032381	-0.87785	-0.0004475	-1.513	-0.00077131	509.77293299654065	84.93	0.46037	84.93	84.8	85.261	0					11	8	2	0	0	0	0.55359	1	31157	31157		28.487	12.64	1	1290300			63831	8037	46576	46941	62184	62184					0.023673020594856098
YMIAHITGL	9	Unmodified	_YMIAHITGL_					0	0	0		nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS;ENST00000581920.1_1_18:667730-672994:+|nuORF;nc|ENSG00000176890|P04818-3|TYMS;chr18:657947-669072|467|17.35|0.94|4.21|+|ENST00000323250|TYMS,TYMS	nc|ENSG00000176890|P04818-2|TYMS	nc|ENSG00000176890|P04818-2|TYMS	MULTI-MATCH	A375_MHC_IP_R2	2		2	509.773145	1017.53174	-0.67052	-0.00034181	-0.54852	-0.00027962	-1.219	-0.00062144	509.77272298522803	84.062	0.5648	84.801	84.559	85.124	0.73962	-0.064411	0.00017877	NaN	36.044	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1386900			63832	8037	46576	46941							0.023673020594856098
YMLSSSQSW	9	Unmodified	_YMLSSSQSW_					0	0	0			REV__ENSG00000198734|ENST00000367797|F5	REV__ENSG00000198734|ENST00000367797|F5	MSMS	A375_MHC_IP_R2	2	544.6777954101562	2	544.739499	1087.46445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.603	1	75.341	74.841	75.841	0.73752								0	0	0	0.15131	1	28317	28317		19.439	7.7987	1		+		63833	22406	46577	46942	62185	62185					-0.07578772942110845
YMNREEFWEMF	11	Unmodified	_YMNREEFWEMF_					0	0	0		nc|ENSG00000116133|Q15392-2|DHCR24;ENSG00000116133|ENST00000371269|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	MULTI-SECPEP	A375_MHC_IP_R1	1	528.1383056640625	3	527.888217	1580.64282	-0.57932	-0.00030582	2.5229	0.0013318	1.9436	0.001026	527.8898924385779	76.478	0.70911	76.478	76.067	76.776	0					15	13	2	0	0	0	1.0005	1	27858	27858		1.1098	0	1	1193200			63834	3373	46578	46943	62186	62186					-0.12427471085425168
YMPQRESVTY	10	Unmodified	_YMPQRESVTY_					0	0	0			REV__ENSG00000091009|ENST00000265271|RBM27	REV__ENSG00000091009|ENST00000265271|RBM27	MULTI-MSMS	A375_MHC_IP_R1	1	425.6007080078125	3	425.200901	1272.58087	0.20581	8.7512E-05	-0.62718	-0.00026668	-0.42137	-0.00017917	425.20073251571034	21.988	0.45844	21.988	21.757	22.216	0					15	8	3	0	0	0	0.54492	1	5868	5868		21.799	6.8423	1	2601700	+		63835	16938	46579	46944	62187	62187					-0.04451454442209979
YMPQRESVTY	10	Unmodified	_YMPQRESVTY_					0	0	0			REV__ENSG00000091009|ENST00000265271|RBM27	REV__ENSG00000091009|ENST00000265271|RBM27	MULTI-SECPEP	A375_MHC_IP_R1	1	424.8827209472656	3	425.200901	1272.58087	0.20581	8.7512E-05	-0.62718	-0.00026668	-0.42137	-0.00017917	425.20073251571034	21.988	0.45844	21.988	21.757	22.216	0					15	8	3	0	0	0	0.92878	1	5884	5884		12.856	12.856	1	2601700	+		63836	16938	46579	46944	62188	62188					-0.04451454442209979
YMPQRESVTY	10	Unmodified	_YMPQRESVTY_					0	0	0			REV__ENSG00000091009|ENST00000265271|RBM27	REV__ENSG00000091009|ENST00000265271|RBM27	MULTI-SECPEP	A375_MHC_IP_R1	1	425.286865234375	3	425.200901	1272.58087	-0.27203	-0.00011567	0.33621	0.00014296	0.064174	2.7287E-05	425.2009366365958	23.318	0.30678	23.318	23.125	23.432	0					10	5	3	0	0	0	0.94113	1	6367	6367		7.0371	2.6309	1	3040700	+		63837	16938	46579	46944	62189	62189					-0.04451454442209979
YMPQRESVTY	10	Unmodified	_YMPQRESVTY_					0	0	0			REV__ENSG00000091009|ENST00000265271|RBM27	REV__ENSG00000091009|ENST00000265271|RBM27	MULTI-SECPEP	A375_MHC_IP_R1	1	425.6007995605469	3	425.200901	1272.58087	0.055114	2.3434E-05	0.098239	4.1771E-05	0.15335	6.5206E-05	425.5352855802834	22.999	0.45096	22.999	22.623	23.074	0					12	8	2	0	0	0	0.88038	1	6227	6227		21.799	6.0608	1	6739600	+		63838	16938	46579	46944	62190	62190					-0.04451454442209979
YMPQRESVTY	10	Unmodified	_YMPQRESVTY_					0	0	0			REV__ENSG00000091009|ENST00000265271|RBM27	REV__ENSG00000091009|ENST00000265271|RBM27	MULTI-MSMS	A375_MHC_IP_R2	2	425.6007385253906	3	425.200901	1272.58087	-0.49195	-0.00020918	-0.18239	-7.7552E-05	-0.67434	-0.00028673	425.2008873818105	20.262	0.66019	20.873	20.499	21.16	0.61029					28	12	4	0	0	0	0.44858	2	6269	6269;6305		21.799	8.9435	1	5663900	+		63839	16938	46579	46944	62191;62192	62191					-0.04451454442209979
YMPQRESVTY	10	Unmodified	_YMPQRESVTY_					0	0	0			REV__ENSG00000091009|ENST00000265271|RBM27	REV__ENSG00000091009|ENST00000265271|RBM27	MULTI-SECPEP	A375_MHC_IP_R2	2	425.6007385253906	3	425.200901	1272.58087	-0.49195	-0.00020918	-0.18239	-7.7552E-05	-0.67434	-0.00028673	425.2008873818105	20.262	0.66019	20.873	20.499	21.16	0.61029					28	12	4	0	0	0	0.88038	1	6269	6269		21.799	2.6555	1	5663900	+		63840	16938	46579	46944	62193	62193					-0.04451454442209979
YMPQRESVTY	10	Unmodified	_YMPQRESVTY_					0	0	0			REV__ENSG00000091009|ENST00000265271|RBM27	REV__ENSG00000091009|ENST00000265271|RBM27	MULTI-MATCH	A375_MHC_IP_R2	2		3	425.200901	1272.58087	-0.5142	-0.00021864	1.0605	0.00045093	0.54631	0.00023229	425.20130562092777	22.846	0.25536	23.477	23.317	23.572	0.63014	0.079392	0.00024105	NaN	7.0371	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1486200	+		63841	16938	46579	46944							-0.04451454442209979
YMSDSFINV	9	Unmodified	_YMSDSFINV_					0	0	0		ENSG00000152133|ENST00000674370|GPATCH11;nc|ENSG00000152133|Q8N954|GPATCH11	ENSG00000152133|ENST00000674370|GPATCH11	ENSG00000152133|ENST00000674370|GPATCH11	MULTI-MSMS	A375_MHC_IP_R2	2	538.6412353515625	2	538.241875	1074.4692	-0.84534	-0.00045499	0.53521	0.00028807	-0.31012	-0.00016692	538.2421167038908	102.13	0.55795	102.89	102.67	103.23	0.76428					21	10	3	0	0	0	0.32899	1	38708	38708		28.487	11.545	1	1296900			63842	5948	46580	46945	62194	62194					-0.06505888799347304
YMTGKLGF	8	Unmodified	_YMTGKLGF_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-SECPEP	A375_MHC_IP_R1	1	459.1332092285156	2	458.733489	915.452425	-0.32461	-0.00014891	-0.065277	-2.9945E-05	-0.38988	-0.00017885	458.733375413986	76.942	0.51131	76.942	76.673	77.184	0					23	9	3	0	0	0	0.86263	1	28107	28107		34.102	9.4286	1	5618800			63843	2650	46581	46946	62195	62195					-0.008683448946499084
YMTGKLGF	8	Unmodified	_YMTGKLGF_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-SECPEP	A375_MHC_IP_R1	1	459.13348388671875	2	458.733489	915.452425	-0.2852	-0.00013083	0.016807	7.7099E-06	-0.26839	-0.00012312	458.7335168138957	79.903	1.9898	79.903	79.161	81.151	0					61	38	2	0	0	0	0.90775	1	29119	29119		26.884	8.7487	1	1661500			63844	2650	46581	46946	62196	62196					-0.008683448946499084
YMTGKLGF	8	Unmodified	_YMTGKLGF_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-SECPEP	A375_MHC_IP_R2	2	459.1334533691406	2	458.733489	915.452425	-0.33907	-0.00015554	-0.074554	-3.42E-05	-0.41363	-0.00018974	458.7334226219452	76.044	0.55709	76.785	76.538	77.095	0.74052					17	10	2	0	0	0	0.86263	1	28903	28903		34.102	1.9855	1	5544600			63845	2650	46581	46946	62197	62197					-0.008683448946499084
YMTGKLGF	8	Unmodified	_YMTGKLGF_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-SECPEP	A375_MHC_IP_R2	2	459.13311767578125	2	458.733489	915.452425	-0.36052	-0.00016538	-0.49535	-0.00022723	-0.85587	-0.00039262	458.7332533631255	75.637	0.51178	76.378	76.026	76.538	0.74052					17	9	2	0	0	0	0.86263	1	28674	28674		34.102	1.9855	1	4795100			63846	2650	46581	46946	62198	62198					-0.008683448946499084
YMTGKLGF	8	Unmodified	_YMTGKLGF_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-SECPEP	A375_MHC_IP_R2	2	459.1335144042969	2	458.733489	915.452425	-0.34391	-0.00015776	0.33993	0.00015594	-0.0039837	-1.8275E-06	458.733563750735	96.162	0.55853	96.912	96.653	97.211	0.75044					22	10	3	0	0	0	0.77651	1	36510	36510		42.095	2.1372	1	1652300			63847	2650	46581	46946	62199	62199					-0.008683448946499084
YMVVLVLVLV	10	Unmodified	_YMVVLVLVLV_					0	0	0			REV__ENST00000555235.1_1_14:103966361-103969561:+|nuORF	REV__ENST00000555235.1_1_14:103966361-103969561:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	574.7607421875	2	574.361596	1146.70864	-0.029709	-1.7064E-05	-1.2164	-0.00069865	-1.2461	-0.00071572	574.3604446809388	145.28	0.2879	145.3	145.19	145.48	0.021408					31	22	2	0	0	0	0.72645	1	56717	56717		0.45834	0	1	136800	+		63848	26094	46582	46947	62200	62200					0.1411533788975703
YNCCCGNF	8	Unmodified	_YNCCCGNF_					0	0	0		KRTAP23-1|p.H13Y|1|0.07|ENSG00000186980|chr21:30348570-30348570|G/A|missense_variant;ENSG00000186980|ENST00000334160|KRTAP23-1	KRTAP23-1|p.H13Y|1|0.07|ENSG00000186980|chr21:30348570-30348570|G/A|missense_variant	KRTAP23-1|p.H13Y|1|0.07|ENSG00000186980|chr21:30348570-30348570|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	462.1535339355469	2	462.145866	922.277179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.462	1	56.462	55.962	56.962	0								0	0	0	0.16876	1	20228	20228		0.79363	0	1				63849	8796	46583	46948	62201	62201					-0.18706831022836923
YNCCCGNF	8	Unmodified	_YNCCCGNF_					0	0	0		KRTAP23-1|p.H13Y|1|0.07|ENSG00000186980|chr21:30348570-30348570|G/A|missense_variant;ENSG00000186980|ENST00000334160|KRTAP23-1	KRTAP23-1|p.H13Y|1|0.07|ENSG00000186980|chr21:30348570-30348570|G/A|missense_variant	KRTAP23-1|p.H13Y|1|0.07|ENSG00000186980|chr21:30348570-30348570|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	462.1200256347656	2	462.145866	922.277179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.899	1	84.899	84.399	85.399	0								0	0	0	0.16876	1	31106	31106		0.79363	0	1				63850	8796	46583	46948	62202	62202					-0.18706831022836923
YNCCCGNF	8	Unmodified	_YNCCCGNF_					0	0	0		KRTAP23-1|p.H13Y|1|0.07|ENSG00000186980|chr21:30348570-30348570|G/A|missense_variant;ENSG00000186980|ENST00000334160|KRTAP23-1	KRTAP23-1|p.H13Y|1|0.07|ENSG00000186980|chr21:30348570-30348570|G/A|missense_variant	KRTAP23-1|p.H13Y|1|0.07|ENSG00000186980|chr21:30348570-30348570|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	462.15325927734375	2	462.145866	922.277179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.622	1	56.373	55.873	56.873	0.75075								0	0	0	0.16876	1	21015	21015		0.79363	0	1				63851	8796	46583	46948	62203	62203					-0.18706831022836923
YNCDAKLPY	9	Unmodified	_YNCDAKLPY_					0	0	0		nc|ENSG00000143954|Q6UW15-2|REG3G;ENSG00000143954|ENST00000272324|REG3G	nc|ENSG00000143954|Q6UW15-2|REG3G	nc|ENSG00000143954|Q6UW15-2|REG3G	MULTI-SECPEP	A375_MHC_IP_R1	1	543.742919921875	2	543.749867	1085.48518	-0.55874	-0.00030382	3.0053	0.0016341	2.4465	0.0013303	544.2516787811115	60.037	0.35624	60.037	59.854	60.21	0					9	6	2	0	0	0	0.74412	1	21670	21670		14.838	6.245	1	1048000			63852	5451	46584	46949	62204	62204					-0.05414182562458336
YNDYCVNT	8	Unmodified	_YNDYCVNT_					0	0	0			REV__ENSG00000188910|ENST00000373366|GJB3	REV__ENSG00000188910|ENST00000373366|GJB3	MSMS	A375_MHC_IP_R2	2	496.1858215332031	2	496.194925	990.375297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.677	1	46.442	45.942	46.942	0.76519								0	0	0	0.16876	1	17082	17082		7.9102	0	1		+		63853	22124	46585	46950	62205	62205					-0.12027607901643478
YNEENYRF	8	Unmodified	_YNEENYRF_					0	0	0			REV__nc|ENSG00000204842|Q99700-2|ATXN2	REV__nc|ENSG00000204842|Q99700-2|ATXN2	MULTI-MSMS	A375_MHC_IP_R2	2	567.6776123046875	2	567.74617	1133.47779	-0.49702	-0.00028218	0.10944	6.2135E-05	-0.38758	-0.00022005	567.7459493845184	48.891	0.66279	49.649	49.332	49.995	0.75737					21	11	2	0	0	0	0.73946	1	18372	18372		23.148	8.3102	1	3633800	+		63854	22543	46586	46951	62206	62206					-0.08361198838520068
YNEHTKKQ	8	Unmodified	_YNEHTKKQ_					0	0	0		ENSG00000135577|ENST00000258042|NMBR	ENSG00000135577|ENST00000258042|NMBR	ENSG00000135577|ENST00000258042|NMBR	MULTI-MSMS	A375_MHC_IP_R1	1	524.6640014648438	2	524.26453	1046.51451	-0.40844	-0.00021413	-0.57356	-0.0003007	-0.982	-0.00051483	524.2641810786243	28.664	0.35437	28.664	28.491	28.845	0					14	6	3	0	0	0	0.70629	1	8884	8884		32.786	9.6373	1	5379100			63855	4697	46587	46952	62207	62207					-0.0068890222196387185
YNEHTKKQ	8	Unmodified	_YNEHTKKQ_					0	0	0		ENSG00000135577|ENST00000258042|NMBR	ENSG00000135577|ENST00000258042|NMBR	ENSG00000135577|ENST00000258042|NMBR	MULTI-MSMS	A375_MHC_IP_R2	2	524.6638793945312	2	524.26453	1046.51451	-0.53919	-0.00028268	-0.022536	-1.1815E-05	-0.56172	-0.00029449	524.2643920503141	27.9	0.76093	28.579	27.996	28.757	0.67857					23	14	2	0	0	0	0.70629	1	9596	9596		32.786	5.902	1	4654700			63856	4697	46587	46952	62208	62208					-0.0068890222196387185
YNEYNEIV	8	Unmodified	_YNEYNEIV_					0	0	0			REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	522.1222534179688	2	522.237647	1042.46074	-0.46417	-0.00024241	0.68672	0.00035863	0.22255	0.00011622	522.2374337296773	93.372	0.66088	94.111	93.797	94.458	0.73902					23	12	3	0	0	0	0.97021	1	35396	35396		3.5965	0	1	1330500	+		63857	28281	46588	46953	62209	62209					-0.05879119444330172
YNFLDGLEQRY	11	Unmodified	_YNFLDGLEQRY_					0	0	0		tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1;tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1;tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1	tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1	tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1	MSMS	A375_MHC_IP_R2	2	709.0170288085938	2	709.340966	1416.66738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.69	1	105.45	104.95	105.95	0.76308								0	0	0	0.16138	1	39604	39604		11.495	3.8858	1				63858	29571	46589	46954	62210	62210					-0.024287516160256928
YNIWLYIYRKW	11	Unmodified	_YNIWLYIYRKW_					0	0	0			REV__nc|ENSG00000101343|Q9BZJ0-3|CRNKL1	REV__nc|ENSG00000101343|Q9BZJ0-3|CRNKL1	MSMS	A375_MHC_IP_R1	1	539.6360473632812	3	539.9574	1616.85037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.392	1	45.392	44.892	45.892	0								0	0	0	0.16358	1	15881	15881		0.094841	0	1		+		63859	27149	46590	46955	62211	62211					0.0666184723643255
YNLDDIWEVYH	11	Unmodified	_YNLDDIWEVYH_					0	0	0		tr|U7STV7|U7STV7_FUSNUGlutamyl-tRNAreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemAPE=3SV=1	tr|U7STV7|U7STV7_FUSNUGlutamyl-tRNAreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemAPE=3SV=1	tr|U7STV7|U7STV7_FUSNUGlutamyl-tRNAreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemAPE=3SV=1	MSMS	A375_MHC_IP_R2	2	733.8310546875	2	733.832974	1465.6514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.51	1	119.12	118.62	119.62	0.60909								0	0	0	0.16191	1	44995	44995		8.7454	3.0136	1				63860	29716	46591	46956	62212	62212					-0.06280457852903965
YNLLLGVHGL	10	Unmodified	_YNLLLGVHGL_					0	0	0		ADCY6|p.D866N|1|0.24|ENSG00000174233|chr12:48773494-48773494|C/T|missense_variant	ADCY6|p.D866N|1|0.24|ENSG00000174233|chr12:48773494-48773494|C/T|missense_variant	ADCY6|p.D866N|1|0.24|ENSG00000174233|chr12:48773494-48773494|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	550.7465209960938	2	549.818941	1097.62333	-0.77269	-0.00042484	1.8231	0.0010024	1.0504	0.00057753	550.321078294817	131.28	0.25101	131.28	131.18	131.43	0					8	4	3	0	0	0	0.69947	1	50584	50584		12.532	5.8084	1	2023600			63861	59	46592	46957	62213	62213					0.07842308748331561
YNLPWFRT	8	Unmodified	_YNLPWFRT_					0	0	0		CDS1|p.D138N|1|0.27|ENSG00000163624|chr4:84617633-84617633|G/A|missense_variant	CDS1|p.D138N|1|0.27|ENSG00000163624|chr4:84617633-84617633|G/A|missense_variant	CDS1|p.D138N|1|0.27|ENSG00000163624|chr4:84617633-84617633|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	366.0982971191406	3	366.190665	1095.55016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.906	1	70.906	70.406	71.406	0								0	0	0	0.16876	1	25753	25753		3.2813	0	1				63862	356	46593	46958	62214	62214					0.006211800257005962
YNLSSNTMY	9	Unmodified	_YNLSSNTMY_					0	0	0		ENST00000381161.5_1_X:2748138-2799251:+|nuORF;nc|ENSG00000056998|O15488-5|GYG2;nc|ENSG00000056998|O15488-4|GYG2;nc|ENSG00000056998|O15488-3|GYG2;nc|ENSG00000056998|O15488-6|GYG2;ENSG00000056998|ENST00000398806|GYG2;nc|ENSG00000056998|O15488|GYG2	ENST00000381161.5_1_X:2748138-2799251:+|nuORF	ENST00000381161.5_1_X:2748138-2799251:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	547.1367797851562	2	546.736957	1091.45936	-0.75143	-0.00041083	0.41467	0.00022672	-0.33676	-0.00018412	546.7371450864932	63.026	0.50454	63.769	63.434	63.938	0.74263					15	9	2	0	0	0	0.71341	1	23942	23942		18.146	6.5061	1	1523000			63863	1279	46594	46959	62215	62215					-0.082710768047491
YNTAKAIAEW	10	Unmodified	_YNTAKAIAEW_					0	0	0		nc|ENSG00000121897|O43766-2|LIAS;nc|ENSG00000121897|O43766-3|LIAS;ENSG00000121897|ENST00000640888|LIAS	nc|ENSG00000121897|O43766-2|LIAS	nc|ENSG00000121897|O43766-2|LIAS	MULTI-MSMS	A375_MHC_IP_R2	2	584.4977416992188	2	583.795663	1165.57677	-0.63607	-0.00037134	0.75005	0.00043787	0.11398	6.6539E-05	584.2978848998051	62.13	0.96359	62.873	62.37	63.333	0.74263					24	18	2	0	0	0	0.62871	1	23493	23493		27.629	2.2295	1	2363500			63864	3745	46595	46960	62216	62216					0.000608241263535092
YNVIQAYIF	9	Unmodified	_YNVIQAYIF_					0	0	0		tr|U7T4Y7|U7T4Y7_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00608PE=3SV=1	tr|U7T4Y7|U7T4Y7_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00608PE=3SV=1	tr|U7T4Y7|U7T4Y7_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00608PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	566.6714477539062	2	565.797675	1129.5808	-0.38279	-0.00021658	-0.20421	-0.00011554	-0.587	-0.00033212	565.7974052652479	126.01	0.3049	126.31	126.12	126.43	0.2951					10	5	3	0	0	0	0.64808	1	49239	49239		11.64	0	1	7274000			63865	30006	46596	46961	62217	62217					0.021189136200518988
YNVKNVAKLY	10	Unmodified	_YNVKNVAKLY_					0	0	0		ENST00000380882.5_4:85656-87337:+|nuORF	ENST00000380882.5_4:85656-87337:+|nuORF	ENST00000380882.5_4:85656-87337:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	606.6651611328125	2	606.342781	1210.67101	-0.2607	-0.00015808	-1.9035	-0.0011542	-2.1642	-0.0013122	606.8413769922074	86.513	0.25728	87.246	87.049	87.306	0.733					6	4	2	0	0	0	0.9269	1	32853	32853		3.5965	0	1	2571500			63866	11361	46597	46962	62218	62218					0.07409962948509019
YNVNVSNKKF	10	Unmodified	_YNVNVSNKKF_					0	0	0		tr|U7SMF0|U7SMF0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01964PE=4SV=1	tr|U7SMF0|U7SMF0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01964PE=4SV=1	tr|U7SMF0|U7SMF0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01964PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	405.2839050292969	3	404.8839	1211.62987	-0.68312	-0.00027659	1.288	0.00052147	0.60483	0.00024488	404.884106629687	23.813	0.81277	23.813	23.584	24.397	0					22	15	2	0	0	0	0.28986	1	6640	6640		40.725	6.5032	1	11757000			63867	29528	46598	46963	62219	62219					0.03252201909026553
YNVPDVERY	9	Unmodified	_YNVPDVERY_					0	0	0			REV__tr|U7STX4|U7STX4_FUSNUDUF2207domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01600PE=4SV=1	REV__tr|U7STX4|U7STX4_FUSNUDUF2207domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01600PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	385.5833435058594	3	385.520739	1153.54039	0.30086	0.00011599	-0.24123	-9.2999E-05	0.059628	2.2988E-05	385.5207152527089	20.104	0.76086	20.104	19.877	20.638	0					17	14	2	0	0	0	0.69507	1	5230	5230		9.544	0.56773	1	1927400	+		63868	28515	46599	46964	62220	62220					-0.03024052770342678
YNYITGESP	9	Unmodified	_YNYITGESP_					0	0	0		tr|U7SUB0|U7SUB0_FUSNUAlpha-ribazolephosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01084PE=4SV=1	tr|U7SUB0|U7SUB0_FUSNUAlpha-ribazolephosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01084PE=4SV=1	tr|U7SUB0|U7SUB0_FUSNUAlpha-ribazolephosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01084PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	1045.9095458984375	1	1043.46802	1042.46074	0.0052102	5.4366E-06	-0.1286	-0.00013419	-0.12339	-0.00012875	1043.467754796814	75.038	3.1491	75.776	75.365	78.514	0.73752					154	61	5	0	0	0	0.70307	1	28822	28822		6.7232	0.99131	1	114480000			63869	29751	46600	46965	62221	62221					-0.05879119444330172
YNYITGESP	9	Unmodified	_YNYITGESP_					0	0	0		tr|U7SUB0|U7SUB0_FUSNUAlpha-ribazolephosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01084PE=4SV=1	tr|U7SUB0|U7SUB0_FUSNUAlpha-ribazolephosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01084PE=4SV=1	tr|U7SUB0|U7SUB0_FUSNUAlpha-ribazolephosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01084PE=4SV=1	MULTI-MATCH	A375_MHC_IP_R1	1		1	1043.46802	1042.46074	0.14092	0.00014705	-0.022624	-2.3607E-05	0.1183	0.00012344	1043.467879513701	75.59	3.4452	75.59	75.211	78.657	0	-0.092788	5.8058E-05	NaN	6.7232	167	67	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132370000			63870	29751	46600	46965							-0.05879119444330172
YNYLKFNKS	9	Unmodified	_YNYLKFNKS_					0	0	0			REV__tr|U7T096|U7T096_FUSNUFimbrialassemblyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00783PE=4SV=1	REV__tr|U7T096|U7T096_FUSNUFimbrialassemblyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00783PE=4SV=1	MSMS	A375_MHC_IP_R2	2	392.93157958984375	3	392.873113	1175.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.888	1	28.566	28.066	29.066	0.67857								0	0	0	0.15306	1	9581	9581		16.566	3.7099	1		+		63871	28671	46601	46966	62222	62222					0.01673414506035442
YPATGADV	8	Unmodified	_YPATGADV_					0	0	0		ENST00000474986.2_1_11:66054976-66056456:-|nuORF;ENST00000376899.8_1_11:66054976-66056456:-|nuORF;ENSG00000174851|ENST00000376901|YIF1A	ENST00000474986.2_1_11:66054976-66056456:-|nuORF	ENST00000474986.2_1_11:66054976-66056456:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	793.0181884765625	1	793.37266	792.365384	-0.38987	-0.00030931	0.23185	0.00018394	-0.15802	-0.00012537	793.3729155469272	33.522	0.30466	33.522	33.393	33.698	0					7	5	2	0	0	0	0.91495	1	10936	10936		18.135	4.6271	1	2399400			63872	7910	46602	46967	62223	62223					-0.039104278447098295
YPCCNNSSCY	10	Unmodified	_YPCCNNSSCY_					0	0	0		ENST00000352251.7_2_13:39587562-39587667:-|nuORF	ENST00000352251.7_2_13:39587562-39587667:-|nuORF	ENST00000352251.7_2_13:39587562-39587667:-|nuORF	MSMS	A375_MHC_IP_R2	2	577.1879272460938	2	577.191002	1152.36745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.63	1	112.36	111.86	112.86	0.72458								0	0	0	0.15508	1	42087	42087		4.3292	0.38484	1				63873	10931	46603	46968	62224	62224					-0.20263826485074787
YPCQNNKAY	9	Unmodified	_YPCQNNKAY_					0	0	0		nc|ENSG00000168615|Q13443-2|ADAM9;ENSG00000168615|ENST00000487273|ADAM9	nc|ENSG00000168615|Q13443-2|ADAM9	nc|ENSG00000168615|Q13443-2|ADAM9	MULTI-MSMS	A375_MHC_IP_R2	2	551.23193359375	2	550.745116	1099.47568	-0.90495	-0.0004984	0.97096	0.00053475	0.06601	3.6354E-05	550.7436226791446	48.837	0.71274	49.595	49.383	50.096	0.75736					33	13	4	0	0	0	0.35581	1	18348	18348		26.884	6.43	1	3470800			63874	7327	46604	46969	62225	62225					-0.07007950847992106
YPDDDEDDDE	10	Unmodified	_YPDDDEDDDE_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A;ENST00000557382.1_1_14:91925105-91927973:-|nuORF	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MSMS	A375_MHC_IP_R1	1	614.194091796875	2	614.194027	1226.3735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.45	1	122.45	121.95	122.95	0								0	0	0	0.15591	1	45573	45573		1.6526	0	1				63875	2219	46605	46970	62226	62226					-0.23063034967231033
YPDDYQYY	8	Unmodified	_YPDDYQYY_					0	0	0		ENSG00000143850|ENST00000272203|PLEKHA6	ENSG00000143850|ENST00000272203|PLEKHA6	ENSG00000143850|ENST00000272203|PLEKHA6	MSMS	A375_MHC_IP_R2	2	375.9496765136719	3	376.150312	1125.42911	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.432	1	81.177	80.677	81.677	0.74474								0	0	0	0.16876	1	30535	30535		1.6526	0.58116	1				63876	5442	46606	46971	62227	62227					-0.12859112198293587
YPDELCFAK	9	Unmodified	_YPDELCFAK_					0	0	0			REV__ENSG00000174145|ENST00000309447|NWD2	REV__ENSG00000174145|ENST00000309447|NWD2	MSMS	A375_MHC_IP_R1	1	543.198486328125	2	543.252243	1084.48993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.998	1	37.998	37.498	38.498	0								0	0	0	0.1493	1	12849	12849		22.736	1.1993	1		+		63877	21268	46607	46972	62228	62228					-0.04893298419688108
YPDFKKLI	8	Unmodified	_YPDFKKLI_					0	0	0		tr|U7SPA0|U7SPA0_FUSNUMethionine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=metGPE=3SV=1	tr|U7SPA0|U7SPA0_FUSNUMethionine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=metGPE=3SV=1	tr|U7SPA0|U7SPA0_FUSNUMethionine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=metGPE=3SV=1	MSMS	A375_MHC_IP_R1	1	512.1658325195312	2	512.29731	1022.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.44	1	131.44	130.94	131.94	0								0	0	0	0.16876	1	50675	50675		22.453	5.3661	1				63878	29575	46608	46973	62229	62229					0.06968118971053627
YPELVLQKTL	10	Unmodified	_YPELVLQKTL_					0	0	0		nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7;ENSG00000254122|ENST00000398594|PCDHGB7	nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	MSMS	A375_MHC_IP_R1	1	602.2621459960938	2	602.352814	1202.69108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.06	1	145.06	144.56	145.56	0								0	0	0	0.15591	1	55616	55616		1.6526	0	1				63879	9875	46609	46974	62230	62230					0.09783713888487
YPEYHKVY	8	Unmodified	_YPEYHKVY_					0	0	0		nc|ENSG00000164823|Q9Y236|OSGIN2;ENSG00000164823|ENST00000451899|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	MSMS	A375_MHC_IP_R1	1	549.6903076171875	2	549.766374	1097.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.705	1	71.705	71.205	72.205	0								0	0	0	0.16876	1	26065	26065		8.5933	0	1				63880	6884	46610	46975	62231	62231					-0.026662324480867028
YPGCVHGSCV	10	Unmodified	_YPGCVHGSCV_					0	0	0		nc|ENSG00000184916|Q9Y219-2|JAG2;ENSG00000184916|ENST00000331782|JAG2	nc|ENSG00000184916|Q9Y219-2|JAG2	nc|ENSG00000184916|Q9Y219-2|JAG2	MULTI-MSMS	A375_MHC_IP_R1	1	511.2258605957031	2	511.215137	1020.41572	-0.62809	-0.00032109	0.45398	0.00023208	-0.17411	-8.9006E-05	511.2153681314509	52.99	0.65812	52.99	52.643	53.301	0					21	12	2	0	0	0	0.70329	1	18871	18871		10.824	0	1	3974200			63881	8618	46611	46976	62232	62232					-0.09366964782861942
YPGCVHGSCV	10	Unmodified	_YPGCVHGSCV_					0	0	0		nc|ENSG00000184916|Q9Y219-2|JAG2;ENSG00000184916|ENST00000331782|JAG2	nc|ENSG00000184916|Q9Y219-2|JAG2	nc|ENSG00000184916|Q9Y219-2|JAG2	MULTI-MATCH	A375_MHC_IP_R2	2		2	511.215137	1020.41572	-1.1822	-0.00060435	0.61231	0.00031302	-0.56988	-0.00029133	511.21538598482994	52.473	0.70828	53.225	52.831	53.54	0.75225	0.11754	8.8869E-05	NaN	10.824	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3198500			63882	8618	46611	46976							-0.09366964782861942
YPGDGLRL	8	Unmodified	_YPGDGLRL_					0	0	0		ENST00000465670.1_1_7:2419801-2419867:+|nuORF	ENST00000465670.1_1_7:2419801-2419867:+|nuORF	ENST00000465670.1_1_7:2419801-2419867:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	446.1399230957031	2	445.74016	889.465767	0.47168	0.00021025	-0.82112	-0.00036601	-0.34944	-0.00015576	445.73990999639835	69.484	0.71098	69.484	69.121	69.832	0					29	13	3	0	0	0	0.96266	1	25187	25187		11.64	3.7301	1	4553800			63883	12247	46612	46977	62233	62233					0.016612292089462244
YPGPARLP	8	Unmodified	_YPGPARLP_					0	0	0		ENSG00000132631|ENST00000377428|SCP2D1	ENSG00000132631|ENST00000377428|SCP2D1	ENSG00000132631|ENST00000377428|SCP2D1	MSMS	A375_MHC_IP_R1	1	435.6509094238281	2	435.745245	869.475937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.29	1	101.29	100.79	101.79	0								0	0	0	0.16876	1	37226	37226		0.79363	0	1				63884	4429	46613	46978	62234	62234					0.03597836934170573
YPGPTVFPDYT	11	Unmodified	_YPGPTVFPDYT_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2;nc|ENSG00000257743|Q2M2H8-3|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MSMS	A375_MHC_IP_R2	2	628.8687133789062	2	628.795329	1255.5761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.84	1	69.575	69.075	70.075	0.73511								0	0	0	0.16051	1	26085	26085		13.906	3.0821	1				63885	9912	46614	46979	62235	62235					-0.04146015313335738
YPHSLPSSL	9	Unmodified	_YPHSLPSSL_					0	0	0			REV__ENST00000366479.3_1_1:248201943-248202102:+|nuORF	REV__ENST00000366479.3_1_1:248201943-248202102:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	500.168701171875	2	500.758549	999.502546	-0.42464	-0.00021264	-0.10755	-5.3859E-05	-0.5322	-0.0002665	500.75846247084144	59.032	0.25614	59.032	58.887	59.143	0					6	4	2	0	0	0	0.65246	1	21240	21240		10.824	0	1	730920	+		63886	23933	46615	46980	62236	62236					0.002774810348682877
YPKFNFVGKLL	11	Unmodified	_YPKFNFVGKLL_					0	0	0		ENSG00000112232|ENST00000281156|KHDRBS2	ENSG00000112232|ENST00000281156|KHDRBS2	ENSG00000112232|ENST00000281156|KHDRBS2	MULTI-MSMS	A375_MHC_IP_R1	1	442.9918518066406	3	442.592058	1324.75434	-0.083293	-3.6865E-05	-0.21248	-9.4041E-05	-0.29577	-0.00013091	442.5919144246757	74.547	0.50687	74.547	74.247	74.754	0					22	9	3	0	0	0	0.72851	1	27151	27151		10.315	0	1	2480000			63887	3061	46616	46981	62237	62237					0.10495699396369673
YPKFNFVGKLL	11	Unmodified	_YPKFNFVGKLL_					0	0	0		ENSG00000112232|ENST00000281156|KHDRBS2	ENSG00000112232|ENST00000281156|KHDRBS2	ENSG00000112232|ENST00000281156|KHDRBS2	MULTI-MSMS	A375_MHC_IP_R2	2	442.99188232421875	3	442.592058	1324.75434	-0.31204	-0.00013811	0.10138	4.4869E-05	-0.21066	-9.3237E-05	442.5920376446969	73.643	0.50992	74.379	74.041	74.551	0.7354					22	9	3	0	0	0	0.72851	1	27960	27960		10.315	0	1	2678900			63888	3061	46616	46981	62238	62238					0.10495699396369673
YPKFNFVGKLL	11	Unmodified	_YPKFNFVGKLL_					0	0	0		ENSG00000112232|ENST00000281156|KHDRBS2	ENSG00000112232|ENST00000281156|KHDRBS2	ENSG00000112232|ENST00000281156|KHDRBS2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	442.592058	1324.75434	-0.083293	-3.6865E-05	-0.21248	-9.4041E-05	-0.29577	-0.00013091	442.5919144246757	74.547	0.50687	74.547	74.247	74.754	0	0.08436	-0.00022309	NaN	10.315	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2480000			63889	3061	46616	46981							0.10495699396369673
YPKFNFVGKLL	11	Unmodified	_YPKFNFVGKLL_					0	0	0		ENSG00000112232|ENST00000281156|KHDRBS2	ENSG00000112232|ENST00000281156|KHDRBS2	ENSG00000112232|ENST00000281156|KHDRBS2	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	442.592058	1324.75434	-0.31204	-0.00013811	0.10138	4.4869E-05	-0.21066	-9.3237E-05	442.5920376446969	73.643	0.50992	74.379	74.041	74.551	0.7354	-0.08436	0.00019364	NaN	10.315	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2678900			63890	3061	46616	46981							0.10495699396369673
YPLCFTKMS	9	Unmodified	_YPLCFTKMS_					0	0	0			REV__ENST00000389900.8_1_7:5756366-5760731:-|nuORF	REV__ENST00000389900.8_1_7:5756366-5760731:-|nuORF	MSMS	A375_MHC_IP_R2	2	545.25390625	2	545.259013	1088.50347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.173	1	87.906	87.406	88.406	0.733								0	0	0	0.1521	1	33151	33151		18.135	9.5417	1		+		63891	24258	46617	46982	62239	62239					-0.03723763912103095
YPLIEDELRAI	11	Unmodified	_YPLIEDELRAI_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MSMS	A375_MHC_IP_R1	1	666.3861694335938	2	666.36391	1330.71327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.85	1	118.85	118.35	119.35	0								0	0	0	0.16124	1	43843	43843		12.241	0	1				63892	2647	46618	46983	62240	62240					0.0611389356622567
YPLLLSPDLPV	11	Unmodified	_YPLLLSPDLPV_					0	0	0			REV__ENSG00000128915|ENST00000261520|ICE2	REV__ENSG00000128915|ENST00000261520|ICE2	MULTI-MSMS	A375_MHC_IP_R1	1	409.9725341796875	3	409.572552	1225.69583	0.049309	2.0196E-05	0.046967	1.9236E-05	0.096276	3.9432E-05	409.5725599597202	62.868	0.71699	62.868	62.557	63.274	0					17	13	2	0	0	0	0.73404	1	22736	22736		5.0475	1.1712	1	2023700	+		63893	18475	46619	46984	62241	62241					0.0920059803120239
YPLLLSPDLPV	11	Unmodified	_YPLLLSPDLPV_					0	0	0			REV__ENSG00000128915|ENST00000261520|ICE2	REV__ENSG00000128915|ENST00000261520|ICE2	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	409.572552	1225.69583	0.049309	2.0196E-05	0.046967	1.9236E-05	0.096276	3.9432E-05	409.5725599597202	62.868	0.71699	62.868	62.557	63.274	0	0.098847	0.00047287	NaN	5.0475	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2023700	+		63894	18475	46619	46984							0.0920059803120239
YPLLLSPDLPV	11	Unmodified	_YPLLLSPDLPV_					0	0	0			REV__ENSG00000128915|ENST00000261520|ICE2	REV__ENSG00000128915|ENST00000261520|ICE2	MULTI-MATCH	A375_MHC_IP_R2	2		3	409.572552	1225.69583	-0.23368	-9.571E-05	-0.54083	-0.00022151	-0.77451	-0.00031722	409.5723562998627	61.928	0.45569	62.67	62.521	62.976	0.74263	-0.098847	-0.00024937	NaN	5.0475	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1814300	+		63895	18475	46619	46984							0.0920059803120239
YPLRKYAVKA	10	Unmodified	_YPLRKYAVKA_					0	0	0		ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENST00000373570.8_1_9:127620199-127620799:-|nuORF	ENSG00000136942|ENST00000348462|RPL35	ENSG00000136942|ENST00000348462|RPL35	MULTI-SECPEP	A375_MHC_IP_R1	1	404.28961181640625	3	403.576519	1207.70773	-0.40383	-0.00016298	0.016469	6.6467E-06	-0.38736	-0.00015633	403.91074693237545	25.079	0.45506	25.079	24.953	25.408	0					15	8	2	0	0	0	0.93578	1	7242	7242		3.3196	0	1	5019800			63896	4848	46620	46985	62242	62242					0.11218259565089284
YPLRKYAVKA	10	Unmodified	_YPLRKYAVKA_					0	0	0		ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENST00000373570.8_1_9:127620199-127620799:-|nuORF	ENSG00000136942|ENST00000348462|RPL35	ENSG00000136942|ENST00000348462|RPL35	MULTI-MSMS	A375_MHC_IP_R2	2	403.9557800292969	3	403.576519	1207.70773	-0.30883	-0.00012464	-0.17219	-6.9491E-05	-0.48102	-0.00019413	403.91079150765376	24.42	0.45713	25.064	24.907	25.364	0.64368					11	8	2	0	0	0	0.31523	1	8017	8017		39.213	31.736	1	5215100			63897	4848	46620	46985	62243	62243					0.11218259565089284
YPLVRIIHYNY	11	Unmodified	_YPLVRIIHYNY_					0	0	0			REV__tr|U7SUD7|U7SUD7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01195PE=3SV=1	REV__tr|U7SUD7|U7SUD7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01195PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	484.6657409667969	3	484.266233	1449.77687	-0.22404	-0.00010849	-1.3924	-0.00067427	-1.6164	-0.00078276	484.2651876379559	42.181	1.061	42.181	41.932	42.993	0					35	20	3	0	0	0	0.67023	1	14603	14603		17.863	3.645	1	7508900	+		63898	28548	46621	46986	62244	62244					0.06997298794021845
YPLVRIIHYNY	11	Unmodified	_YPLVRIIHYNY_					0	0	0			REV__tr|U7SUD7|U7SUD7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01195PE=3SV=1	REV__tr|U7SUD7|U7SUD7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01195PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	484.9997863769531	3	484.266233	1449.77687	-0.7987	-0.00038679	-0.96963	-0.00046956	-1.7683	-0.00085634	484.2655970985239	41.305	0.60751	42.079	41.794	42.401	0.77451					31	11	4	0	0	0	0.67023	1	15307	15307		17.863	5.0072	1	8847300	+		63899	28548	46621	46986	62245	62245					0.06997298794021845
YPMEFQAE	8	Unmodified	_YPMEFQAE_					0	0	0			REV__nc|ENSG00000100462|O14744-4|PRMT5	REV__nc|ENSG00000100462|O14744-4|PRMT5	MSMS	A375_MHC_IP_R2	2	507.70257568359375	2	507.715493	1013.41643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.573	1	47.339	46.839	47.839	0.76519								0	0	0	0.16876	1	17446	17446		13.508	1.8676	1		+		63900	17095	46622	46987	62246	62246					-0.08973846862170376
YPNTLPESFT	10	Unmodified	_YPNTLPESFT_					0	0	0		nc|ENSG00000188986|Q8WX92|NELFB;ENSG00000188986|ENST00000343053|NELFB	nc|ENSG00000188986|Q8WX92|NELFB	nc|ENSG00000188986|Q8WX92|NELFB	MULTI-SECPEP	A375_MHC_IP_R1	1	390.9454650878906	3	390.188878	1167.5448	-0.036026	-1.4057E-05	0.30301	0.00011823	0.26698	0.00010417	390.18894839091524	28.064	0.95765	28.064	27.381	28.339	0					33	18	4	0	0	0	0.75488	1	8573	8573		16.275	11.227	1	16030000			63901	8949	46623	46988	62247	62247					-0.0322658834743379
YPNYKYRPRRK	11	Unmodified	_YPNYKYRPRRK_					0	0	0		ENSG00000184895|ENST00000383070|SRY;ENSG00000171056|ENST00000304501|SOX7;nc|ENSG00000171056|Q9BT81-2|SOX7	ENSG00000184895|ENST00000383070|SRY	ENSG00000184895|ENST00000383070|SRY	MULTI-SECPEP	A375_MHC_IP_R1	1	514.4328002929688	3	514.288031	1539.84226	-0.35643	-0.00018331	1.0221	0.00052567	0.66571	0.00034237	514.2885487964198	20.716	0.25745	20.716	20.587	20.844	0					8	4	2	0	0	0	1.0015	1	5391	5391		0.094841	0	1	1675800			63902	7570	46624	46989	62248	62248					0.09393713039662543
YPPLKTLQF	9	Unmodified	_YPPLKTLQF_					0	0	0			REV__ENST00000459775.5_1_2:85848673-85875928:+|nuORF	REV__ENST00000459775.5_1_2:85848673-85875928:+|nuORF	MSMS	A375_MHC_IP_R1	1	369.60076904296875	3	369.546337	1105.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.783	1	48.783	48.283	49.283	0								0	0	0	0.15486	1	17227	17227		1.1933	0	1		+		63903	20891	46625	46990	62249	62249					0.06859790516796238
YPPTGELPQYY	11	Unmodified	_YPPTGELPQYY_					0	0	0			REV__nc|ENSG00000111199|Q9HBA0-6|TRPV4	REV__nc|ENSG00000111199|Q9HBA0-6|TRPV4	MULTI-MSMS	A375_MHC_IP_R1	1	443.6113586425781	3	443.211683	1326.61322	-0.087085	-3.8597E-05	0.044008	1.9505E-05	-0.043077	-1.9092E-05	443.2116386749796	50.279	0.35775	50.279	50.101	50.459	0					14	6	3	0	0	0	0.7342	1	17845	17845		6.6235	2.5068	1	2724800	+		63904	17652	46626	46991	62250	62250					-0.03702343767554339
YPPTGELPQYY	11	Unmodified	_YPPTGELPQYY_					0	0	0			REV__nc|ENSG00000111199|Q9HBA0-6|TRPV4	REV__nc|ENSG00000111199|Q9HBA0-6|TRPV4	MULTI-MATCH	A375_MHC_IP_R2	2		3	443.211683	1326.61322	-0.65338	-0.00028958	0.53892	0.00023886	-0.11446	-5.0729E-05	443.2118804539835	49.592	0.4565	50.349	50.145	50.602	0.75737	0.03493	0.00043022	NaN	6.6235	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1737000	+		63905	17652	46626	46991							-0.03702343767554339
YPQRFFEV	8	Unmodified	_YPQRFFEV_					0	0	0		nc|ENSG00000133317|Q96DT0-4|LGALS12;nc|ENSG00000133317|Q96DT0-2|LGALS12;ENSG00000133317|ENST00000394618|LGALS12;nc|ENSG00000133317|Q96DT0-6|LGALS12;nc|ENSG00000133317|Q96DT0-3|LGALS12;nc|ENSG00000133317|Q96DT0|LGALS12;nc|ENSG00000133317|Q96DT0-7|LGALS12	nc|ENSG00000133317|Q96DT0-4|LGALS12	nc|ENSG00000133317|Q96DT0-4|LGALS12	MULTI-SECPEP	A375_MHC_IP_R2	2	543.6721801757812	2	543.274367	1084.53418	-1.2594	-0.00068423	-2.0028	-0.001088	-3.2622	-0.0017723	543.2736496822379	36.613	0.45763	37.384	37.207	37.665	0.7709					17	8	3	0	0	0	0.94479	1	13417	13417		13.508	0	1	2498200			63906	4504	46627	46992	62251	62251					-0.004705262112111086
YPRGKRKKG	9	Unmodified	_YPRGKRKKG_					0	0	0		ENST00000562209.1_1_16:88713507-88717421:-|nuORF;ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA	ENST00000562209.1_1_16:88713507-88717421:-|nuORF	ENST00000562209.1_1_16:88713507-88717421:-|nuORF	MSMS	A375_MHC_IP_R2	2	545.384765625	2	545.335624	1088.6567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.592	1	82.335	81.835	82.835	0.74293								0	0	0	0.15486	1	30988	30988		7.9102	0.62092	1				63907	1237	46628	46993	62252	62252					0.11591355310861218
YPRLIHREQWR	11	Unmodified	_YPRLIHREQWR_					0	0	0			REV__NCBP1|p.F710Sfs*10|1|0.05|ENSG00000136937|chr9:97668955-97668955|T/-|frameshift_variant	REV__NCBP1|p.F710Sfs*10|1|0.05|ENSG00000136937|chr9:97668955-97668955|T/-|frameshift_variant	MSMS	A375_MHC_IP_R1	1	518.658447265625	3	518.619781	1552.83751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.34	1	50.34	49.84	50.84	0								0	0	0	0.16352	1	17831	17831		0.40827	0	1		+		63908	18977	46629	46994	62253	62253					0.08320828896921739
YPRPQVTWF	9	Unmodified	_YPRPQVTWF_					0	0	0		nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENSG00000146555|ENST00000404826|SDK1	nc|ENSG00000146555|Q7Z5N4-3|SDK1	nc|ENSG00000146555|Q7Z5N4-3|SDK1	MULTI-SECPEP	A375_MHC_IP_R1	1	597.2089233398438	2	597.308741	1192.60293	-0.31129	-0.00018594	2.7417	0.0016376	2.4304	0.0014517	597.3104953362342	45.975	0.30504	45.975	45.839	46.144	0					7	5	2	0	0	0	0.76187	1	16150	16150		3.9444	0	1	1858600			63909	5628	46630	46995	62254	62254					0.01433138088486885
YPRQPDRKAP	10	Unmodified	_YPRQPDRKAP_					0	0	0			REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	MSMS	A375_MHC_IP_R2	2	614.5797119140625	2	614.333279	1226.652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.53	1	117.19	116.69	117.69	0.65962								0	0	0	0.15038	1	44034	44034		17.113	1.8644	1		+		63910	19109	46631	46996	62255	62255					0.0477442637745753
YPRRRTSKI	9	Unmodified	_YPRRRTSKI_					0	0	0			REV__ENST00000465432.1_1_2:99797706-99812165:+|nuORF	REV__ENST00000465432.1_1_2:99797706-99812165:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	589.2506103515625	2	588.851638	1175.68872	-0.48244	-0.00028409	-1.1712	-0.00068966	-1.6536	-0.00097375	588.8508223957051	133.68	0.66374	133.85	133.7	134.37	0.16487					15	12	2	0	0	0	0.81363	1	52598	52598		1.8442	0	1	4679200	+		63911	21891	46632	46997	62256	62256					0.10790722994033786
YPRSWNDWQP	10	Unmodified	_YPRSWNDWQP_					0	0	0		ENSG00000157106|ENST00000446231|SMG1;ENST00000532700.2_16:18911356-18937378:-|nuORF	ENSG00000157106|ENST00000446231|SMG1	ENSG00000157106|ENST00000446231|SMG1	MSMS	A375_MHC_IP_R2	2	674.9575805664062	2	674.807094	1347.59963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.36	1	123.74	123.24	124.24	0.3766								0	0	0	0.15435	1	47393	47393		6.7232	0.99131	1				63912	6228	46633	46998	62257	62257					-0.06026156756161072
YPVLRSGNV	9	Unmodified	_YPVLRSGNV_					0	0	0			REV__ENSG00000174106|ENST00000308330|LEMD3	REV__ENSG00000174106|ENST00000308330|LEMD3	MULTI-SECPEP	A375_MHC_IP_R2	2	503.1797790527344	2	502.779816	1003.54508	-0.64714	-0.00032537	1.0905	0.0005483	0.4434	0.00022293	502.7803588422335	77.469	0.66557	78.212	78.01	78.676	0.74293					25	12	3	0	0	0	0.59098	1	29412	29412		27.629	27.629	1	4880200	+		63913	21263	46634	46999	62258	62258					0.04344876163088429
YPVNKYVADLI	11	Unmodified	_YPVNKYVADLI_					0	0	0			REV__ENSG00000076356|ENST00000367033|PLXNA2	REV__ENSG00000076356|ENST00000367033|PLXNA2	MULTI-MSMS	A375_MHC_IP_R1	1	432.65850830078125	3	432.239573	1293.69689	-0.25332	-0.00010949	-1.8316	-0.00079167	-2.0849	-0.00090116	432.2390672976726	37.86	0.30542	37.86	37.658	37.964	0					9	5	2	0	0	0	0.7328	1	12804	12804		6.2344	0.83165	1	1469600	+		63914	16673	46635	47000	62259	62259					0.06178812400139577
YPVYDIEAY	9	Unmodified	_YPVYDIEAY_					0	0	0			REV__ENSG00000198734|ENST00000367797|F5	REV__ENSG00000198734|ENST00000367797|F5	MSMS	A375_MHC_IP_R2	2	566.7062377929688	2	566.763497	1131.51244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.347	1	31.066	30.566	31.566	0.71857								0	0	0	0.15486	1	10661	10661		11.64	0	1		+		63915	22406	46636	47001	62260	62260					-0.048053757504249006
YQADIERMY	9	Unmodified	_YQADIERMY_					0	0	0		ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	MULTI-MSMS	A375_MHC_IP_R1	1	595.6853637695312	2	594.771331	1187.52811	-0.39143	-0.00023281	-0.34482	-0.00020509	-0.73625	-0.0004379	594.7713907471598	55.245	0.609	55.245	54.924	55.533	0					28	11	3	0	0	0	0.39434	1	19777	19777		24.991	2.3329	1	6251100			63916	3865	46637	47002	62261	62261					-0.05815412505035056
YQADIERMY	9	Unmodified	_YQADIERMY_					0	0	0		ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	MULTI-MSMS	A375_MHC_IP_R2	2	595.685546875	2	594.771331	1187.52811	-0.7618	-0.00045309	-0.22387	-0.00013315	-0.98566	-0.00058624	594.771340534822	54.594	0.55837	55.345	55.068	55.626	0.75075					28	10	3	0	0	0	0.28079	1	20607	20607		32.037	9.3794	1	8609400			63917	3865	46637	47002	62262	62262					-0.05815412505035056
YQADIERMY	9	Oxidation (M)	_YQADIERM(Oxidation (M))Y_		YQADIERM(1)Y		YQADIERM(61)Y	0	0	1		ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	MULTI-SECPEP	A375_MHC_IP_R1	1	603.168212890625	2	602.768788	1203.52302	-0.61984	-0.00037362	0.22807	0.00013747	-0.39177	-0.00023615	602.7687964582221	36.489	0.81177	36.489	36.084	36.895	0					24	15	3	0	0	0	0.13199	1	12171	12171		61.09	28.784	1	5020600			63918	3865	46637	47003	62263	62263		199			-0.07059716367666624
YQADIERMY	9	Oxidation (M)	_YQADIERM(Oxidation (M))Y_		YQADIERM(1)Y		YQADIERM(69)Y	0	0	1		ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	ENSG00000123983|ENST00000357430|ACSL3	MULTI-SECPEP	A375_MHC_IP_R2	2	603.168701171875	2	602.768788	1203.52302	-0.60738	-0.00036611	0.32252	0.0001944	-0.28486	-0.00017171	602.7688562913454	35.927	0.71416	36.691	36.283	36.997	0.76338					17	13	2	0	0	0	0.09145	1	12951	12951		69.338	29.389	1	5607100			63919	3865	46637	47003	62264	62264		199			-0.07059716367666624
YQAHLDATAM	10	Unmodified	_YQAHLDATAM_					0	0	0			REV__NLGN4X|p.V454M|1|0.28|ENSG00000146938|chrX:5903318-5903318|C/T|missense_variant	REV__NLGN4X|p.V454M|1|0.28|ENSG00000146938|chrX:5903318-5903318|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	560.6929321289062	2	560.758223	1119.50189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.246	1	74.984	74.484	75.484	0.73752								0	0	0	0.15207	1	28183	28183		13.906	2.2658	1		+		63920	27609	46638	47004	62265	62265					-0.05307681676526954
YQDASSNLPL	10	Unmodified	_YQDASSNLPL_					0	0	0		ENST00000601500.1_1_5:50674257-50674491:-|nuORF	ENST00000601500.1_1_5:50674257-50674491:-|nuORF	ENST00000601500.1_1_5:50674257-50674491:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	554.6839599609375	2	554.269478	1106.5244	-0.74104	-0.00041073	1.3814	0.00076566	0.64035	0.00035492	554.2694827785683	27.84	0.75506	27.84	27.533	28.288	0					37	14	4	0	0	0	0.39599	1	8391	8391		34.402	6.7729	1	17435000			63921	13873	46639	47005	62266	62266					-0.024597590072289677
YQDKVSLPN	9	Unmodified	_YQDKVSLPN_					0	0	0		nc|ENSG00000157766|P16112-3|ACAN;nc|ENSG00000157766|P16112-2|ACAN;nc|ENSG00000157766|P16112|ACAN;ENSG00000157766|ENST00000560601|ACAN	nc|ENSG00000157766|P16112-3|ACAN	nc|ENSG00000157766|P16112-3|ACAN	MULTI-MSMS	A375_MHC_IP_R1	1	533.6820678710938	2	532.274564	1062.53457	-0.21452	-0.00011418	2.575	0.0013706	2.3605	0.0012564	532.2744751351516	69.221	1.1648	69.221	68.717	69.882	0					61	20	5	0	0	0	0.53367	1	25090	25090		18.146	1.9972	1	19203000			63922	6265	46640	47006	62267	62267					0.00580848718004745
YQDPDATSLKY	11	Unmodified	_YQDPDATSLKY_					0	0	0		ENSG00000131778|ENST00000369258|CHD1L;nc|ENSG00000131778|Q86WJ1-4|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L;nc|ENSG00000131778|Q86WJ1-5|CHD1L	ENSG00000131778|ENST00000369258|CHD1L	ENSG00000131778|ENST00000369258|CHD1L	MULTI-SECPEP	A375_MHC_IP_R1	1	651.2058715820312	2	650.806425	1299.5983	-0.41426	-0.0002696	-0.045431	-2.9567E-05	-0.45969	-0.00029917	650.8062914479301	46.484	0.55471	46.484	46.144	46.699	0					29	10	4	0	0	0	0.035348	1	16275	16275		113.99	66.397	1	9328100			63923	4350	46641	47007	62268	62268					-0.03951835635575662
YQDPDATSLKY	11	Unmodified	_YQDPDATSLKY_					0	0	0		ENSG00000131778|ENST00000369258|CHD1L;nc|ENSG00000131778|Q86WJ1-4|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L;nc|ENSG00000131778|Q86WJ1-5|CHD1L	ENSG00000131778|ENST00000369258|CHD1L	ENSG00000131778|ENST00000369258|CHD1L	MULTI-SECPEP	A375_MHC_IP_R2	2	651.2061157226562	2	650.806425	1299.5983	-0.71344	-0.00046431	0.14936	9.7203E-05	-0.56408	-0.00036711	650.8064945938336	45.852	0.603	46.617	46.303	46.906	0.76518					29	11	3	0	0	0	0.082682	1	17129	17129		84.06	50.615	1	10504000			63924	4350	46641	47007	62269	62269					-0.03951835635575662
YQDPSVLYI	9	Unmodified	_YQDPSVLYI_					0	0	0		nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7;nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7;nc|ENSG00000061273|Q8WUI4-10|HDAC7;ENST00000471235.1_1_12:48181791-48181944:-|nuORF;ENST00000459625.5_1_12:48179068-48183703:-|nuORF	nc|ENSG00000061273|Q8WUI4-3|HDAC7	nc|ENSG00000061273|Q8WUI4-3|HDAC7	MULTI-MSMS	A375_MHC_IP_R1	1	1097.951416015625	1	1097.55135	1096.54408	0.35441	0.00038899	0.059371	6.5163E-05	0.41379	0.00045415	1097.5510537506293	108.59	0.55744	108.59	108.31	108.86	0					15	10	2	0	0	0	0.066859	1	39794	39794		57.722	32.323	1	4133600			63925	1318	46642	47008	62270	62270					-0.00033382996502950846
YQDPSVLYI	9	Unmodified	_YQDPSVLYI_					0	0	0		nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7;nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7;nc|ENSG00000061273|Q8WUI4-10|HDAC7;ENST00000471235.1_1_12:48181791-48181944:-|nuORF;ENST00000459625.5_1_12:48179068-48183703:-|nuORF	nc|ENSG00000061273|Q8WUI4-3|HDAC7	nc|ENSG00000061273|Q8WUI4-3|HDAC7	MULTI-SECPEP	A375_MHC_IP_R1	1	549.1197509765625	2	549.279315	1096.54408	-0.27807	-0.00015274	-0.16716	-9.1815E-05	-0.44523	-0.00024456	549.2792398539266	108.59	0.60933	108.59	108.21	108.81	0					20	11	2	0	0	0	0.14572	1	39866	39866		62.573	26.446	1	3357000			63926	1318	46642	47008	62271	62271					-0.00033382996502950846
YQDPSVLYI	9	Unmodified	_YQDPSVLYI_					0	0	0		nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7;nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7;nc|ENSG00000061273|Q8WUI4-10|HDAC7;ENST00000471235.1_1_12:48181791-48181944:-|nuORF;ENST00000459625.5_1_12:48179068-48183703:-|nuORF	nc|ENSG00000061273|Q8WUI4-3|HDAC7	nc|ENSG00000061273|Q8WUI4-3|HDAC7	MULTI-MSMS	A375_MHC_IP_R2	2	549.6788330078125	2	549.279315	1096.54408	-0.81155	-0.00044577	0.10135	5.5669E-05	-0.7102	-0.0003901	549.2791650811864	107.81	0.61423	108.56	108.25	108.86	0.75436					21	11	2	0	0	0	0.082375	1	40699	40699		53.833	15.682	1	2555900			63927	1318	46642	47008	62272	62272					-0.00033382996502950846
YQDPSVLYI	9	Unmodified	_YQDPSVLYI_					0	0	0		nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7;nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7;nc|ENSG00000061273|Q8WUI4-10|HDAC7;ENST00000471235.1_1_12:48181791-48181944:-|nuORF;ENST00000459625.5_1_12:48179068-48183703:-|nuORF	nc|ENSG00000061273|Q8WUI4-3|HDAC7	nc|ENSG00000061273|Q8WUI4-3|HDAC7	MULTI-MATCH	A375_MHC_IP_R2	2		1	1097.55135	1096.54408	0.073014	8.0136E-05	-0.41252	-0.00045276	-0.3395	-0.00037262	1097.5508347108616	107.78	0.51167	108.53	108.3	108.81	0.75436	-0.027717	-0.00027406	NaN	57.722	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3904600			63928	1318	46642	47008							-0.00033382996502950846
YQDPVTLQL	9	Unmodified	_YQDPVTLQL_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-SECPEP	A375_MHC_IP_R1	1	539.184326171875	2	538.784764	1075.55498	-0.6263	-0.00033744	-0.06464	-3.4827E-05	-0.69094	-0.00037227	538.7847970099385	103.16	0.6613	103.16	102.81	103.47	0					28	12	3	0	0	0	0.20059	1	37894	37894		59.368	3.1913	1	3674700			63929	1971	46643	47009	62273	62273					0.020220193778186513
YQDPVTLQL	9	Unmodified	_YQDPVTLQL_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-MSMS	A375_MHC_IP_R2	2	539.1843872070312	2	538.784764	1075.55498	-0.85813	-0.00046235	-0.026953	-1.4522E-05	-0.88508	-0.00047687	538.7848299856911	102.42	0.76142	103.18	102.77	103.53	0.76428					28	14	3	0	0	0	0.020087	1	38782	38782		83.429	7.6679	1	3418500			63930	1971	46643	47009	62274	62274					0.020220193778186513
YQDQILEKFRK	11	Unmodified	_YQDQILEKFRK_					0	0	0		ENSG00000074935|ENST00000368662|TUBE1;ENST00000368657.7_1_6:112400794-112408637:-|nuORF	ENSG00000074935|ENST00000368662|TUBE1	ENSG00000074935|ENST00000368662|TUBE1	MULTI-MSMS	A375_MHC_IP_R2	2	490.3360290527344	3	489.936664	1466.78816	-0.96001	-0.00047034	-0.063204	-3.0966E-05	-1.0232	-0.00050131	489.93657725932655	26.193	0.45619	26.853	26.653	27.109	0.65992					21	8	3	0	0	0	0.62292	1	8851	8851		12.856	0	1	4097000			63931	1596	46644	47010	62275	62275					0.07344076097433572
YQEERPKT	8	Unmodified	_YQEERPKT_					0	0	0			REV__nc|ENSG00000211896|P01857-1|IGHG1	REV__nc|ENSG00000211896|P01857-1|IGHG1	MULTI-SECPEP	A375_MHC_IP_R2	2	526.1637573242188	2	525.764363	1049.51417	-0.84948	-0.00044663	-0.18723	-9.8439E-05	-1.0367	-0.00054507	525.7641077116274	28.307	0.35524	28.985	28.858	29.214	0.67857					9	6	2	0	0	0	0.90775	1	9795	9795		20.454	0	1	3254000	+		63932	27482	46645	47011	62276	62276					-0.008603219418091612
YQERHRKRQSL	11	Unmodified	_YQERHRKRQSL_					0	0	0			REV__ENSG00000205277|ENST00000536621|MUC12	REV__ENSG00000205277|ENST00000536621|MUC12	MULTI-SECPEP	A375_MHC_IP_R1	1	501.1745910644531	3	500.942924	1499.80694	-0.27003	-0.00013527	-3.5583	-0.0017825	-3.8283	-0.0019178	501.2758501297613	35.143	0.35592	35.143	35.013	35.369	0					9	6	2	0	0	0	0.99411	1	11697	11697		2.2527	0	1	1687000	+		63933	22565	46646	47012	62277	62277					0.07703050511895526
YQESKFRY	8	Unmodified	_YQESKFRY_					0	0	0		CON__P41361	CON__P41361	CON__P41361	MULTI-SECPEP	A375_MHC_IP_R2	2	560.205322265625	2	560.774731	1119.53491	-0.78415	-0.00043973	0.13506	7.5739E-05	-0.64909	-0.00036399	560.7748367378209	35.935	0.40771	36.698	36.384	36.792	0.76338					9	7	2	0	0	0	0.972	1	13013	13013		5.7604	0	1	2073600		+	63934	603	46647	47013	62278	62278					-0.0200773156213927
YQFGEIRTI	9	Unmodified	_YQFGEIRTI_					0	0	0		ENSG00000086589|ENST00000199814|RBM22;nc|ENSG00000086589|Q9NW64-2|RBM22;ENST00000520132.1_1_5:150071315-150073858:-|nuORF	ENSG00000086589|ENST00000199814|RBM22	ENSG00000086589|ENST00000199814|RBM22	MULTI-SECPEP	A375_MHC_IP_R1	1	564.1980590820312	2	563.798206	1125.58186	-0.50332	-0.00028377	0.685	0.0003862	0.18168	0.00010243	563.7985006022204	76.547	0.55702	76.547	76.219	76.776	0					16	10	2	0	0	0	0.63763	1	27921	27921		28.495	4.4739	1	2765700			63935	1839	46648	47014	62279	62279					0.024091279889944417
YQFGEIRTI	9	Unmodified	_YQFGEIRTI_					0	0	0		ENSG00000086589|ENST00000199814|RBM22;nc|ENSG00000086589|Q9NW64-2|RBM22;ENST00000520132.1_1_5:150071315-150073858:-|nuORF	ENSG00000086589|ENST00000199814|RBM22	ENSG00000086589|ENST00000199814|RBM22	MULTI-MSMS	A375_MHC_IP_R2	2	564.1976928710938	2	563.798206	1125.58186	-0.50258	-0.00028336	-0.21907	-0.00012351	-0.72165	-0.00040687	563.7981083330584	75.773	0.50851	76.514	76.334	76.843	0.74052					16	9	2	0	0	0	0.095445	1	28814	28814		55.503	21.101	1	2428800			63936	1839	46648	47014	62280	62280					0.024091279889944417
YQFSKNFSL	9	Unmodified	_YQFSKNFSL_					0	0	0		ENST00000478866.5_1_1:161172175-161179984:+|nuORF;nc|ENSG00000158864|O75306-2|NDUFS2;ENSG00000158864|ENST00000676972|NDUFS2;ENST00000483804.5_1_1:161179060-161183980:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	567.7556762695312	2	567.284931	1132.55531	-0.40728	-0.00023105	-0.20328	-0.00011532	-0.61057	-0.00034636	567.2849031175424	77.18	0.76352	77.18	76.673	77.436	0					42	14	4	0	0	0	0.012447	2	28185	28128;28185		93.166	25.085	1	10160000			63937	6337	46649	47015	62281;62282	62282					-0.005665609023253637
YQFSKNFSL	9	Unmodified	_YQFSKNFSL_					0	0	0		ENST00000478866.5_1_1:161172175-161179984:+|nuORF;nc|ENSG00000158864|O75306-2|NDUFS2;ENSG00000158864|ENST00000676972|NDUFS2;ENST00000483804.5_1_1:161179060-161183980:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	567.6845703125	2	567.284931	1132.55531	-0.36942	-0.00020957	-0.29752	-0.00016878	-0.66694	-0.00037834	567.2847445517957	76.386	0.86149	77.127	76.589	77.451	0.74052					39	16	3	0	0	0	0.020087	2	28973	28958;28973		83.429	15.521	1	11938000			63938	6337	46649	47015	62283;62284	62284					-0.005665609023253637
YQFTGIKKY	9	Unmodified	_YQFTGIKKY_					0	0	0		ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	MULTI-MSMS	A375_MHC_IP_R1	1	574.3511352539062	2	574.310949	1146.60735	-0.38268	-0.00021978	0.4483	0.00025747	0.065622	3.7687E-05	574.3111600013272	38.293	1.1706	38.293	38.067	39.238	0					64	22	4	0	0	0	0.02331	1	13012	13012		80.676	52.189	1	111480000			63939	7841	46650	47016	62285	62285					0.03990602511430552
YQFTGIKKY	9	Unmodified	_YQFTGIKKY_					0	0	0		ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	MULTI-MSMS	A375_MHC_IP_R2	2	383.6095275878906	3	383.209725	1146.60735	-0.3934	-0.00015075	0.46875	0.00017963	0.075351	2.8875E-05	383.209877298525	37.53	1.5321	38.3	37.917	39.449	0.7709					93	29	5	0	0	0	0.015356	2	13694	13694;13768		81.915	54.271	1	274890000			63940	7841	46650	47016	62286;62287	62286					0.03990602511430552
YQFTGIKKY	9	Unmodified	_YQFTGIKKY_					0	0	0		ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	MULTI-MSMS	A375_MHC_IP_R2	2	574.7102661132812	2	574.310949	1146.60735	-0.47479	-0.00027268	0.086711	4.9799E-05	-0.38808	-0.00022288	574.3109615630049	37.537	1.0748	38.308	38.02	39.095	0.7709					62	20	4	0	0	0	0.0061124	2	13695	13695;14012		133.05	96.925	1	90423000			63941	7841	46650	47016	62288;62289	62288					0.03990602511430552
YQFTGIKKY	9	Unmodified	_YQFTGIKKY_					0	0	0		ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	383.209725	1146.60735	0.062913	2.4109E-05	0.44818	0.00017175	0.51109	0.00019586	383.20985956902825	38.293	1.2731	38.293	38.016	39.289	0	-0.0035761	-8.5766E-06	NaN	81.915	76	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	284500000			63942	7841	46650	47016							0.03990602511430552
YQFVTVNYK	9	Unmodified	_YQFVTVNYK_					0	0	0			REV__SLC27A6|p.D304N|1|0.18|ENSG00000113396|chr5:128990405-128990405|G/A|missense_variant	REV__SLC27A6|p.D304N|1|0.18|ENSG00000113396|chr5:128990405-128990405|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	581.7006225585938	2	581.300581	1160.58661	-0.3396	-0.00019741	0.88242	0.00051295	0.54282	0.00031554	581.300900016344	38.433	0.6623	38.433	38.118	38.78	0					26	12	3	0	0	0	0.61452	1	12998	12998		26.268	15.444	1	7432300	+		63943	27983	46651	47017	62290	62290					0.012740121317619924
YQFVTVNYK	9	Unmodified	_YQFVTVNYK_					0	0	0			REV__SLC27A6|p.D304N|1|0.18|ENSG00000113396|chr5:128990405-128990405|G/A|missense_variant	REV__SLC27A6|p.D304N|1|0.18|ENSG00000113396|chr5:128990405-128990405|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	581.700439453125	2	581.300581	1160.58661	-0.58344	-0.00033915	0.66898	0.00038888	0.085543	4.9726E-05	581.3008557135021	37.764	0.66512	38.538	38.074	38.739	0.77451					30	12	3	0	0	0	0.11629	1	13745	13745		47.749	20.865	1	6598500	+		63944	27983	46651	47017	62291	62291					0.012740121317619924
YQGNTYINLK	10	Unmodified	_YQGNTYINLK_					0	0	0		tr|U7T468|U7T468_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00277PE=3SV=1	tr|U7T468|U7T468_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00277PE=3SV=1	tr|U7T468|U7T468_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00277PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	405.612060546875	3	405.211906	1212.61389	-0.06625	-2.6845E-05	0.044978	1.8226E-05	-0.021272	-8.6196E-06	405.21198511374683	44.596	0.45737	45.365	45.188	45.646	0.7691					12	8	2	0	0	0	0.71076	1	16683	16683		7.4771	0.84669	1	2467800			63945	29995	46652	47018	62292	62292					0.016084956720987975
YQGNTYINLK	10	Unmodified	_YQGNTYINLK_					0	0	0		tr|U7T468|U7T468_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00277PE=3SV=1	tr|U7T468|U7T468_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00277PE=3SV=1	tr|U7T468|U7T468_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00277PE=3SV=1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	405.211906	1212.61389	-0.06625	-2.6845E-05	0.044978	1.8226E-05	-0.021272	-8.6196E-06	405.21198511374683	44.596	0.45737	45.365	45.188	45.646	0.7691	-0.055417	-0.00057005	NaN	7.4771	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2467800			63946	29995	46652	47018							0.016084956720987975
YQHEVIIHQY	10	Unmodified	_YQHEVIIHQY_					0	0	0			REV__ENSG00000116711|ENST00000367466|PLA2G4A	REV__ENSG00000116711|ENST00000367466|PLA2G4A	MSMS	A375_MHC_IP_R2	2	665.2369995117188	2	665.332944	1328.65134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.562	1	58.311	57.811	58.811	0.74894								0	0	0	0.15332	1	21767	21767		10.074	0.6908	1		+		63947	17968	46653	47019	62293	62293					0.00015586937774969556
YQIAEQFRV	9	Unmodified	_YQIAEQFRV_					0	0	0		ENSG00000105671|ENST00000247003|DDX49;ENST00000595858.5_1_19:19032475-19037138:+|nuORF	ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	MULTI-MSMS	A375_MHC_IP_R1	1	577.703369140625	2	577.303655	1152.59276	0.054899	3.1694E-05	0.067914	3.9207E-05	0.12281	7.09E-05	577.3036777696051	71.878	0.55388	71.878	71.615	72.169	0					26	10	3	0	0	0	0.02114	1	26128	26128		82.529	38.671	1	9199100			63948	2628	46654	47020	62294	62294					0.02256530363274578
YQIAEQFRV	9	Unmodified	_YQIAEQFRV_					0	0	0		ENSG00000105671|ENST00000247003|DDX49;ENST00000595858.5_1_19:19032475-19037138:+|nuORF	ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	MULTI-MATCH	A375_MHC_IP_R2	2		2	577.303655	1152.59276	-0.35456	-0.00020469	-0.25985	-0.00015001	-0.6144	-0.0003547	577.3034093555367	71.194	0.5569	71.929	71.605	72.162	0.73421	0.025203	-0.00018931	NaN	82.529	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8695000			63949	2628	46654	47020							0.02256530363274578
YQKVMALW	8	Unmodified	_YQKVMALW_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.E6095Rfs*15|1|0.07|ENSG00000127603|chr1:39441238-39441239|-/A|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	A375_MHC_IP_R1	1	519.6743774414062	2	519.775688	1037.53682	-0.25657	-0.00013336	-0.33054	-0.0001718	-0.5871	-0.00030516	519.7752079344244	108.35	1.2173	108.35	107.75	108.97	0					48	23	3	0	0	0	0.77741	1	39840	39840		4.3292	4.3292	1	4797700			63950	4099;14587	46655	47021	62295	62295					0.01955605922103132
YQLFEVSHK	9	Unmodified	_YQLFEVSHK_					0	0	0			REV__tr|U7SUF3|U7SUF3_FUSNU1,4-alpha-glucanbranchingenzymeGlgBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgBPE=3SV=1	REV__tr|U7SUF3|U7SUF3_FUSNU1,4-alpha-glucanbranchingenzymeGlgBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgBPE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	384.2863464355469	3	384.201229	1149.58186	-0.43029	-0.00016532	0.013265	5.0965E-06	-0.41703	-0.00016022	384.20111573346804	38.178	0.46059	38.952	38.739	39.2	0.77451					11	8	2	0	0	0	0.75164	1	14130	14130		9.544	1.935	1	2026600	+		63951	28552	46656	47022	62296	62296					0.013051279889850775
YQLFIFAKYH	10	Unmodified	_YQLFIFAKYH_					0	0	0		ENST00000429908.2_1_2:211019235-211035074:-|nuORF	ENST00000429908.2_1_2:211019235-211035074:-|nuORF	ENST00000429908.2_1_2:211019235-211035074:-|nuORF	MSMS	A375_MHC_IP_R1	1	665.722412109375	2	665.353148	1328.69174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107	1	107	106.5	107.5	0								0	0	0	0.15353	1	39267	39267		9.3831	0	1				63952	11848	46657	47023	62297	62297					0.040545533281829194
YQLGDALQF	9	Unmodified	_YQLGDALQF_					0	0	0			REV__ENSG00000174231|ENST00000304992|PRPF8	REV__ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R2	2	529.6946411132812	2	527.763832	1053.51311	-0.81639	-0.00043086	0.021356	1.1271E-05	-0.79503	-0.00041959	527.763868064745	61.299	1.5133	62.044	61.263	62.776	0.74503					82	29	6	0	0	0	0.34064	1	23260	23260		27.629	6.0918	1	155110000	+		63953	21274	46658	47024	62298	62298					-0.011505363107289668
YQNFRASVQW	10	Unmodified	_YQNFRASVQW_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-MSMS	A375_MHC_IP_R2	2	434.2701416015625	3	433.5474	1297.62037	-0.55317	-0.00023982	-0.22451	-9.7336E-05	-0.77768	-0.00033716	433.5479748744489	19.691	0.8105	20.301	19.841	20.651	0.61029					41	15	4	0	0	0	0.60556	1	6108	6108		12.873	3.6288	1	3681800	+		63954	16825	46659	47025	62299	62299					-0.016535663764898345
YQQLEAHL	8	Unmodified	_YQQLEAHL_					0	0	0			REV__ENSG00000171853|ENST00000324266|TRAPPC12	REV__ENSG00000171853|ENST00000324266|TRAPPC12	MSMS	A375_MHC_IP_R2	2	501.2109680175781	2	501.256174	1000.49779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.595	1	46.36	45.86	46.86	0.76519								0	0	0	0.16876	1	17049	17049		14.582	2.0501	1		+		63955	21102	46660	47026	62300	62300					-0.0024340310790194053
YQRELLYQRKD	11	Unmodified	_YQRELLYQRKD_					0	0	0		CD109|p.E970K|1|0.18|ENSG00000156535|chr6:73803249-73803249|G/A|missense_variant	CD109|p.E970K|1|0.18|ENSG00000156535|chr6:73803249-73803249|G/A|missense_variant	CD109|p.E970K|1|0.18|ENSG00000156535|chr6:73803249-73803249|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	504.6552734375	3	504.603685	1510.78923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.873	1	86.606	86.106	87.106	0.73367								0	0	0	0.16309	1	32655	32655		2.6312	0	1				63956	328	46661	47027	62301	62301					0.05426290466334649
YQREVISV	8	Unmodified	_YQREVISV_					0	0	0			REV__ENSG00000091136|ENST00000222399|LAMB1	REV__ENSG00000091136|ENST00000222399|LAMB1	MSMS	A375_MHC_IP_R1	1	497.2579040527344	2	497.271824	992.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.02	1	142.02	141.52	142.52	0								0	0	0	0.16876	1	54498	54498		5.2307	0	1		+		63957	16944	46662	47028	62302	62302					0.03253169926188093
YQRHTKFVNDY	11	Unmodified	_YQRHTKFVNDY_					0	0	0		nc|ENSG00000148690|Q70Z53-2|FRA10AC1;nc|ENSG00000148690|Q70Z53-4|FRA10AC1;nc|ENSG00000148690|Q70Z53-5|FRA10AC1;nc|ENSG00000148690|Q70Z53-3|FRA10AC1;ENSG00000148690|ENST00000359204|FRA10AC1	nc|ENSG00000148690|Q70Z53-2|FRA10AC1	nc|ENSG00000148690|Q70Z53-2|FRA10AC1	MULTI-MSMS	A375_MHC_IP_R1	1	736.2596435546875	2	735.859857	1469.70516	-0.52265	-0.00038459	-0.36417	-0.00026798	-0.88681	-0.00065257	735.8594076178761	93.817	0.55684	93.817	93.533	94.09	0					32	10	4	0	0	0	0.72494	1	34453	34453		13.615	1.3742	1	6314600			63958	5757	46663	47029	62303	62303					-0.01090240630514927
YQRLLLEKRQR	11	Unmodified	_YQRLLLEKRQR_					0	0	0		nc|ENSG00000078246|O75386-2|TULP3;ENSG00000078246|ENST00000448120|TULP3;nc|ENSG00000078246|O75386-3|TULP3	nc|ENSG00000078246|O75386-2|TULP3	nc|ENSG00000078246|O75386-2|TULP3	MSMS	A375_MHC_IP_R1	1	501.7021179199219	3	501.63532	1501.88413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.39	1	136.39	135.89	136.89	0								0	0	0	0.16351	1	52539	52539		0.45452	0.35968	1				63959	1670	46664	47030	62304	62304					0.15326268728199466
YQRLLLEKRQR	11	Unmodified	_YQRLLLEKRQR_					0	0	0		nc|ENSG00000078246|O75386-2|TULP3;ENSG00000078246|ENST00000448120|TULP3;nc|ENSG00000078246|O75386-3|TULP3	nc|ENSG00000078246|O75386-2|TULP3	nc|ENSG00000078246|O75386-2|TULP3	MSMS	A375_MHC_IP_R1	1	501.70819091796875	3	501.63532	1501.88413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.49	1	136.49	135.99	136.99	0								0	0	0	0.16351	1	52573	52573		0.45452	0.046251	1				63960	1670	46664	47030	62305	62305					0.15326268728199466
YQRPANLF	8	Unmodified	_YQRPANLF_					0	0	0		tr|U7SP89|U7SP89_FUSNUFe(3+)ionsimportATP-bindingproteinFbpCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01770PE=4SV=1	tr|U7SP89|U7SP89_FUSNUFe(3+)ionsimportATP-bindingproteinFbpCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01770PE=4SV=1	tr|U7SP89|U7SP89_FUSNUFe(3+)ionsimportATP-bindingproteinFbpCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01770PE=4SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	505.7234802246094	2	504.766709	1007.51886	-0.39083	-0.00019728	0.008941	4.5131E-06	-0.38189	-0.00019277	504.76678625377235	87.673	1.6809	87.673	87.134	88.815	0					78	32	4	0	0	0	0.7338	1	32168	32168		24.674	0.88411	1	75740000			63961	29573	46665	47031	62306	62306					0.015406069916025444
YQRQQLPL	8	Unmodified	_YQRQQLPL_					0	0	0		ENST00000508232.1_1_6:43603609-43604431:+|nuORF;ENSG00000124688|ENST00000372171|MAD2L1BP;nc|ENSG00000124688|Q15013-3|MAD2L1BP	ENST00000508232.1_1_6:43603609-43604431:+|nuORF	ENST00000508232.1_1_6:43603609-43604431:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	523.6939697265625	2	523.293091	1044.57163	-0.58665	-0.00030699	1.6031	0.00083889	1.0164	0.0005319	523.2937297487631	107.73	0.51029	108.49	108.15	108.66	0.75436					16	9	3	0	0	0	0.75322	1	40716	40716		19.439	6.9074	1	1791500			63962	12873	46666	47032	62307	62307					0.05112565054423612
YQRQQLPL	8	Unmodified	_YQRQQLPL_					0	0	0		ENST00000508232.1_1_6:43603609-43604431:+|nuORF;ENSG00000124688|ENST00000372171|MAD2L1BP;nc|ENSG00000124688|Q15013-3|MAD2L1BP	ENST00000508232.1_1_6:43603609-43604431:+|nuORF	ENST00000508232.1_1_6:43603609-43604431:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	523.293091	1044.57163	-0.23001	-0.00012036	1.1287	0.00059065	0.89871	0.00047029	523.2937046321766	108.57	0.4053	108.57	108.31	108.71	0	0.040878	-0.00021145	NaN	19.439	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1337800			63963	12873	46666	47032							0.05112565054423612
YQRWREERFRQ	11	Unmodified	_YQRWREERFRQ_					0	0	0		ENSG00000184840|ENST00000332598|TMED9;ENST00000513799.5_1_5:177019550-177022414:+|nuORF;ENST00000507723.1_1_5:177021070-177022414:+|nuORF	ENSG00000184840|ENST00000332598|TMED9	ENSG00000184840|ENST00000332598|TMED9	MULTI-MSMS	A375_MHC_IP_R1	1	551.6817626953125	3	551.950078	1652.82841	-0.63578	-0.00035092	-0.56581	-0.0003123	-1.2016	-0.00066322	552.2850311824953	65.048	0.45708	65.048	64.903	65.36	0					11	8	2	0	0	0	0.73934	1	23530	23530		0	0	1	905640			63964	8612	46667	47033	62308	62308					0.02810435540573053
YQSLYDVPA	9	Unmodified	_YQSLYDVPA_					0	0	0			REV__nc|ENSG00000123342|Q99542-4|MMP19	REV__nc|ENSG00000123342|Q99542-4|MMP19	MULTI-MSMS	A375_MHC_IP_R1	1	529.1585083007812	2	528.25584	1054.49713	-0.76642	-0.00040487	2.4024	0.0012691	1.6359	0.00086419	528.7585692245862	39.824	0.75999	39.824	39.391	40.151	0					52	14	5	0	0	0	0.38603	1	13685	13685		25.399	2.663	1	20965000	+		63965	18237	46668	47034	62309	62309					-0.027942425476112476
YQSMYPEL	8	Unmodified	_YQSMYPEL_					0	0	0		ENST00000305536.10_1_X:129547000-129547084:+|nuORF	ENST00000305536.10_1_X:129547000-129547084:+|nuORF	ENST00000305536.10_1_X:129547000-129547084:+|nuORF	MSMS	A375_MHC_IP_R2	2	515.6749877929688	2	515.731143	1029.44773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.399	1	93.138	92.638	93.638	0.73902								0	0	0	0.16876	1	35140	35140		19.439	5.9311	1				63966	10569	46669	47035	62310	62310					-0.06581273828078338
YQSPRYSPS	9	Unmodified	_YQSPRYSPS_					0	0	0			REV__HOXB1|p.G94R|1|0.26|ENSG00000120094|chr17:48530625-48530625|C/T|missense_variant	REV__HOXB1|p.G94R|1|0.26|ENSG00000120094|chr17:48530625-48530625|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	542.6987915039062	2	542.756538	1083.49852	-1.1414	-0.00061951	0.19539	0.00010605	-0.94601	-0.00051346	542.7565176061604	20.005	1.4714	20.615	20.095	21.566	0.61029					59	28	3	0	0	0	0.70307	1	6254	6254		6.7232	0.51738	1	3180500	+		63967	26754	46670	47036	62311	62311					-0.0398860845884883
YQSSHQCSSL	10	Unmodified	_YQSSHQCSSL_					0	0	0			REV__ENST00000500447.1_1_11:567046-567121:-|nuORF	REV__ENST00000500447.1_1_11:567046-567121:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	570.1744384765625	2	570.242938	1138.47132	-0.052441	-2.9904E-05	0.71758	0.00040919	0.66514	0.00037929	570.242811499039	107.92	0.30507	107.92	107.7	108	0					8	5	2	0	0	0	0.62155	1	39616	39616		19.257	3.4098	1	799800	+		63968	25488	46671	47037	62312	62312					-0.09237460061558522
YQTDVLVKV	9	Unmodified	_YQTDVLVKV_					0	0	0		ENST00000427606.2_1_8:146202527-146219907:-|nuORF;ENST00000426361.6_2_8:146202527-146225127:-|nuORF	ENST00000427606.2_1_8:146202527-146219907:-|nuORF	ENST00000427606.2_1_8:146202527-146219907:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	533.2028198242188	2	532.802957	1063.59136	-0.566	-0.00030157	0.18923	0.00010082	-0.37677	-0.00020074	532.8031161017416	63.167	0.51379	63.167	62.863	63.377	0					15	9	2	0	0	0	0.49701	1	22840	22840		40.239	12.61	1	2437800			63969	11805	46672	47038	62313	62313					0.062108962745242025
YQTDVLVKV	9	Unmodified	_YQTDVLVKV_					0	0	0		ENST00000427606.2_1_8:146202527-146219907:-|nuORF;ENST00000426361.6_2_8:146202527-146225127:-|nuORF	ENST00000427606.2_1_8:146202527-146219907:-|nuORF	ENST00000427606.2_1_8:146202527-146219907:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	533.2025756835938	2	532.802957	1063.59136	-0.83333	-0.000444	-0.14872	-7.9239E-05	-0.98205	-0.00052324	532.8029195677005	62.39	0.55993	63.133	62.824	63.383	0.74263					17	10	2	0	0	0	0.4557	1	23663	23663		37.075	16.66	1	2684300			63970	11805	46672	47038	62314	62314					0.062108962745242025
YQVGQLYSV	9	Unmodified	_YQVGQLYSV_					0	0	0		ENSG00000174238|ENST00000313486|PITPNA;ENST00000471825.1_1_22:28306950-28315179:-|nuORF;ENST00000460566.5_1_22:28293057-28315179:-|nuORF;ENSG00000180957|ENST00000335272|PITPNB;nc|ENSG00000180957|P48739-2|PITPNB;nc|ENSG00000180957|P48739-3|PITPNB	ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	MSMS	A375_MHC_IP_R1	1	528.7263793945312	2	528.771657	1055.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.111	1	86.111	85.611	86.611	0								0	0	0	0.1493	1	31567	31567		22.736	1.8651	1				63971	7866	46673	47039	62315	62315					0.00321750206330762
YQVHYEWWRKI	11	Unmodified	_YQVHYEWWRKI_					0	0	0		nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2	nc|ENSG00000154864|Q9H5I5-4|PIEZO2	nc|ENSG00000154864|Q9H5I5-4|PIEZO2	MSMS	A375_MHC_IP_R2	2	536.6715087890625	3	536.60877	1606.80448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.586	1	71.32	70.82	71.82	0.73421								0	0	0	0.16351	1	26757	26757		0.45452	0.35968	1				63972	6114	46674	47040	62316	62316					0.025352020541959064
YQVLFSADT	9	Unmodified	_YQVLFSADT_					0	0	0			REV__nc|ENSG00000080493|Q9Y6R1-3|SLC4A4	REV__nc|ENSG00000080493|Q9Y6R1-3|SLC4A4	MULTI-MSMS	A375_MHC_IP_R2	2	522.6556396484375	2	522.25584	1042.49713	-0.70567	-0.00036854	-0.22818	-0.00011917	-0.93386	-0.00048771	522.2557712503136	50.633	0.70662	51.387	51.108	51.815	0.75406					24	13	3	0	0	0	0.12592	1	19070	19070		46.021	7.4062	1	4732700	+		63973	16748	46675	47041	62317	62317					-0.022422425476406715
YQVLLGIKTH	10	Unmodified	_YQVLLGIKTH_					0	0	0		nc|ENSG00000108244|Q9C075-2|KRT23;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075	nc|ENSG00000108244|Q9C075-2|KRT23	nc|ENSG00000108244|Q9C075-2|KRT23	MULTI-MSMS	A375_MHC_IP_R2	2	391.6326904296875	3	391.232641	1170.67609	-0.11483	-4.4924E-05	0.1024	4.0062E-05	-0.012428	-4.8623E-06	391.2326535018739	88.361	0.45433	89.093	88.825	89.279	0.7318					18	8	3	0	0	0	0.72006	1	33628	33628		3.3196	0	1	1873100		+	63974	632	46676	47042	62318	62318					0.09758266811127214
YQYHGHWR	8	Unmodified	_YQYHGHWR_					0	0	0		ENST00000372577.2_1_9:131749897-131749969:+|nuORF	ENST00000372577.2_1_9:131749897-131749969:+|nuORF	ENST00000372577.2_1_9:131749897-131749969:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	574.222412109375	2	573.765032	1145.51551	-0.21616	-0.00012403	-4.3134	-0.0024749	-4.5296	-0.0025989	573.7634250997846	103.21	0.15154	103.98	103.89	104.04	0.76428					4	2	2	0	0	0	0.77123	1	39088	39088		14.582	2.0501	1	836560			63975	11205	46677	47043	62319	62319					-0.05142643062413299
YQYPRPLLI	9	Unmodified	_YQYPRPLLI_					0	0	0		ENSG00000160991|ENST00000495936|ORAI2	ENSG00000160991|ENST00000495936|ORAI2	ENSG00000160991|ENST00000495936|ORAI2	MULTI-MSMS	A375_MHC_IP_R1	1	581.8751220703125	2	581.834591	1161.65463	-0.43899	-0.00025542	-0.9451	-0.00054989	-1.3841	-0.00080531	582.3348035309324	91.027	0.45677	91.027	90.742	91.199	0					16	8	3	0	0	0	0.17328	1	33433	33433		39.957	20.7	1	2707300			63976	6455	46678	47044	62320	62320					0.0802688178241624
YQYPRPLLI	9	Unmodified	_YQYPRPLLI_					0	0	0		ENSG00000160991|ENST00000495936|ORAI2	ENSG00000160991|ENST00000495936|ORAI2	ENSG00000160991|ENST00000495936|ORAI2	MULTI-SECPEP	A375_MHC_IP_R2	2	581.50732421875	2	581.834591	1161.65463	-0.25474	-0.00014822	0.03545	2.0626E-05	-0.21929	-0.00012759	581.8345741722922	90.123	0.56132	90.855	90.545	91.106	0.7318					18	10	2	0	0	0	0.47674	1	34253	34253		32.305	26.574	1	2238600			63977	6455	46678	47044	62321	62321					0.0802688178241624
YQYPVIIHL	9	Unmodified	_YQYPVIIHL_					0	0	0		ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	574.2232666015625	2	573.321317	1144.62808	-0.20913	-0.0001199	0.081847	4.6925E-05	-0.12728	-7.2973E-05	573.3212494708071	104.12	0.81461	104.12	103.72	104.54	0					37	13	4	0	0	0	0.061545	1	38198	38198		59.795	44.957	1	15168000			63978	1408	46679	47045	62322	62322					0.061551928911057985
YQYQVLVE	8	Unmodified	_YQYQVLVE_					0	0	0		PAPPA2|p.A1093V|1|0.33|ENSG00000116183|chr1:176702648-176702648|C/T|missense_variant	PAPPA2|p.A1093V|1|0.33|ENSG00000116183|chr1:176702648-176702648|C/T|missense_variant	PAPPA2|p.A1093V|1|0.33|ENSG00000116183|chr1:176702648-176702648|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	521.1795043945312	2	521.266207	1040.51786	-0.66058	-0.00034434	1.6128	0.0008407	0.95223	0.00049637	521.2671887791419	80.505	0.2523	80.505	80.34	80.592	0					7	4	2	0	0	0	0.972	1	29410	29410		7.9102	6.4283	1	1328500			63979	15107	46680	47046	62323	62323					-0.0007765216794268781
YQYYDEASTF	10	Unmodified	_YQYYDEASTF_					0	0	0		tr|U7T5C5|U7T5C5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00520PE=4SV=1	tr|U7T5C5|U7T5C5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00520PE=4SV=1	tr|U7T5C5|U7T5C5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00520PE=4SV=1	MSMS	A375_MHC_IP_R2	2	644.164306640625	2	643.764226	1285.5139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.3964	1	0.86685	0.36685	1.3668	0.47044								0	0	0	0.15642	1	136	136		0	0	1				63980	30019	46681	47047	62324	62324					-0.11743786452348104
YRADGIRIY	9	Unmodified	_YRADGIRIY_					0	0	0		nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;ENST00000557314.5_1_14:20839728-20850189:-|nuORF	nc|ENSG00000129566|Q99973-2|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	MULTI-MSMS	A375_MHC_IP_R1	1	376.60491943359375	3	376.204974	1125.59309	0.6477	0.00024367	-0.97509	-0.00036683	-0.32739	-0.00012317	376.20451016334965	45.409	0.60616	45.409	45.081	45.687	0					23	11	3	0	0	0	0.093901	1	15915	15915		51.765	26.884	1	3324700			63981	4199	46682	47048	62325	62325					0.035319500831292316
YRADGIRIY	9	Unmodified	_YRADGIRIY_					0	0	0		nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;ENST00000557314.5_1_14:20839728-20850189:-|nuORF	nc|ENSG00000129566|Q99973-2|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	MULTI-MSMS	A375_MHC_IP_R2	2	376.6049499511719	3	376.204974	1125.59309	0.17101	6.4336E-05	-0.31121	-0.00011708	-0.14019	-5.2741E-05	376.204765503161	44.596	0.5589	45.365	45.035	45.594	0.7691					18	10	3	0	0	0	0.043891	1	16676	16676		66.683	33.238	1	2817600			63982	4199	46682	47048	62326	62326					0.035319500831292316
YRAITVRKL	9	Unmodified	_YRAITVRKL_					0	0	0		nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9;ENST00000488738.5_1_20:61595350-61598131:+|nuORF	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MULTI-MSMS	A375_MHC_IP_R1	1	374.3047180175781	3	373.904747	1118.69241	0.035951	1.3442E-05	-0.066693	-2.4937E-05	-0.030742	-1.1495E-05	373.9046852562939	26.707	0.654	26.707	26.474	27.128	0					38	12	4	0	0	0	0.0027032	1	8000	8000		139.32	69.983	1	37302000			63983	2270	46683	47049	62327	62327					0.13781392767873513
YRAITVRKL	9	Unmodified	_YRAITVRKL_					0	0	0		nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9;ENST00000488738.5_1_20:61595350-61598131:+|nuORF	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MULTI-MSMS	A375_MHC_IP_R2	2	374.29632568359375	3	373.904747	1118.69241	-0.06992	-2.6143E-05	-0.21791	-8.1479E-05	-0.28783	-0.00010762	373.90462998063043	25.859	0.86426	26.518	26.245	27.109	0.65992					48	16	4	0	0	0	0.0098272	3	8771	8654;8701;8771		115.06	45.721	1	29513000			63984	2270	46683	47049	62328;62329;62330	62330					0.13781392767873513
YRAQPSASL	9	Unmodified	_YRAQPSASL_					0	0	0		ENSG00000239306|ENST00000310137|RBM14	ENSG00000239306|ENST00000310137|RBM14	ENSG00000239306|ENST00000310137|RBM14	MULTI-MSMS	A375_MHC_IP_R1	1	497.1614685058594	2	496.761623	991.508694	-0.81955	-0.00040712	0.2868	0.00014247	-0.53275	-0.00026465	496.76163728394295	29.175	0.35664	29.175	28.996	29.353	0					15	6	3	0	0	0	0.0098183	1	9097	9097		114.65	53.047	1	10953000			63985	9764	46684	47050	62331	62331					0.012599992663695048
YRATWHLFYHY	11	Unmodified	_YRATWHLFYHY_					0	0	0			REV__ENST00000597347.5_1_3:180893045-181281553:+|nuORF	REV__ENST00000597347.5_1_3:180893045-181281553:+|nuORF	MSMS	A375_MHC_IP_R1	1	519.5933227539062	3	519.585966	1555.73607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.322	1	86.322	85.822	86.822	0								0	0	0	0.1635	1	31650	31650		0.50596	0	1		+		63986	26480	46685	47051	62332	62332					-0.01957042525646102
YRDWPWRRVY	10	Unmodified	_YRDWPWRRVY_					0	0	0		ENST00000253329.2_1_6:149862180-149862721:-|nuORF	ENST00000253329.2_1_6:149862180-149862721:-|nuORF	ENST00000253329.2_1_6:149862180-149862721:-|nuORF	MSMS	A375_MHC_IP_R2	2	499.6748352050781	3	499.58971	1495.7473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.138	1	93.877	93.377	94.377	0.73902								0	0	0	0.1562	1	35412	35412		0.69767	0.19171	1				63987	10216	46686	47052	62333	62333					0.01925779568477992
YREWYEKYY	9	Unmodified	_YREWYEKYY_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;RBBP6|p.E1056Nfs*55|1|0.28|ENSG00000122257|chr16:24569855-24569855|T/-|frameshift_variant	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MULTI-MSMS	A375_MHC_IP_R1	1	467.61505126953125	3	467.215427	1398.62445	-0.32198	-0.00015043	-0.1816	-8.4848E-05	-0.50358	-0.00023528	467.2152116168027	23.286	1.2156	23.286	22.673	23.889	0					48	23	3	0	0	0	0.70902	1	6257	6257		6.1918	2.0752	1	5384500			63988	3771	46687	47053	62334	62334					-0.05891521673424904
YRFETVQKL	9	Unmodified	_YRFETVQKL_					0	0	0		ENSG00000214078|ENST00000397443|CPNE1;ENST00000483359.5_1_20:34220178-34252711:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-MSMS	A375_MHC_IP_R1	1	395.6204528808594	3	395.220513	1182.63971	0.27536	0.00010883	-0.068577	-2.7103E-05	0.20678	8.1724E-05	395.2204702856831	45.411	0.60552	45.411	45.183	45.789	0					45	11	5	0	0	0	0.0089677	2	15870	15870;15958		98.73	63.118	1	67465000			63989	9604	46688	47054	62335;62336	62335					0.055693899144444
YRFETVQKL	9	Unmodified	_YRFETVQKL_					0	0	0		ENSG00000214078|ENST00000397443|CPNE1;ENST00000483359.5_1_20:34220178-34252711:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-MSMS	A375_MHC_IP_R1	1	592.7266845703125	2	592.327131	1182.63971	-0.047179	-2.7946E-05	0.11972	7.0912E-05	0.072538	4.2966E-05	592.3271208465558	45.409	0.55463	45.409	45.183	45.738	0					33	10	4	0	0	0	0.015196	1	15871	15871		107.1	54.831	1	26274000			63990	9604	46688	47054	62337	62337					0.055693899144444
YRFETVQKL	9	Unmodified	_YRFETVQKL_					0	0	0		ENSG00000214078|ENST00000397443|CPNE1;ENST00000483359.5_1_20:34220178-34252711:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-MSMS	A375_MHC_IP_R2	2	395.6202697753906	3	395.220513	1182.63971	-0.21269	-8.4061E-05	-0.015436	-6.1006E-06	-0.22813	-9.0162E-05	395.2204836387772	44.596	0.71431	45.365	45.086	45.8	0.7691					51	13	5	0	0	0	0.0098956	2	16609	16609;16713		118.21	82.597	1	62852000			63991	9604	46688	47054	62338;62339	62338					0.055693899144444
YRFETVQKL	9	Unmodified	_YRFETVQKL_					0	0	0		ENSG00000214078|ENST00000397443|CPNE1;ENST00000483359.5_1_20:34220178-34252711:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-MSMS	A375_MHC_IP_R2	2	592.726318359375	2	592.327131	1182.63971	-0.63878	-0.00037837	0.091572	5.424E-05	-0.54721	-0.00032413	592.3271628476328	44.594	0.55971	45.364	45.086	45.646	0.76909					30	10	4	0	0	0	0.023053	1	16613	16613		96.936	44.667	1	24925000			63992	9604	46688	47054	62340	62340					0.055693899144444
YRFGDSQQL	9	Unmodified	_YRFGDSQQL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	A375_MHC_IP_R1	1	558.1889038085938	2	557.269813	1112.52507	-0.2903	-0.00016177	-0.27562	-0.00015359	-0.56591	-0.00031537	557.2696670218004	48.004	0.85842	48.004	47.668	48.526	0					45	16	5	0	0	0	0.12771	1	16909	16909		45.7	18.071	1	27436000			63993	14587;14586	46689	47055	62341	62341					-0.026689195675317023
YRFGDSQQL	9	Unmodified	_YRFGDSQQL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	A375_MHC_IP_R2	2	558.2578125	2	557.269813	1112.52507	-0.58225	-0.00032447	0.092632	5.1621E-05	-0.48962	-0.00027285	557.2698760076728	47.252	1.1686	48.013	47.664	48.833	0.76128					49	22	4	0	0	0	0.22528	1	17714	17714		36.127	14.38	1	32818000			63994	14587;14586	46689	47055	62342	62342					-0.026689195675317023
YRFPSVSKL	9	Unmodified	_YRFPSVSKL_					0	0	0		ENST00000524636.1_1_11:30516841-30557583:-|nuORF;ENST00000525519.1_1_11:30473620-30557628:-|nuORF;nc|ENSG00000066382|Q15777-2|MPPED2;ENSG00000066382|ENST00000358117|MPPED2	ENST00000524636.1_1_11:30516841-30557583:-|nuORF	ENST00000524636.1_1_11:30516841-30557583:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	366.6097412109375	3	366.209836	1095.60768	0.33968	0.00012439	0.068131	2.495E-05	0.40781	0.00014934	366.20993668544776	56.184	1.0159	56.184	55.482	56.498	0					39	19	3	0	0	0	0.068071	1	20083	20083		57.249	30.365	1	3307500			63995	1409	46690	47056	62343	62343					0.0637002223129457
YRFPSVSKL	9	Unmodified	_YRFPSVSKL_					0	0	0		ENST00000524636.1_1_11:30516841-30557583:-|nuORF;ENST00000525519.1_1_11:30473620-30557628:-|nuORF;nc|ENSG00000066382|Q15777-2|MPPED2;ENSG00000066382|ENST00000358117|MPPED2	ENST00000524636.1_1_11:30516841-30557583:-|nuORF	ENST00000524636.1_1_11:30516841-30557583:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	366.6096496582031	3	366.209836	1095.60768	-0.01624	-5.9473E-06	-0.03879	-1.4205E-05	-0.05503	-2.0153E-05	366.209869150606	55.208	0.81395	55.959	55.523	56.337	0.75075					34	15	4	0	0	0	0.068433	1	20855	20855		57.108	29.479	1	4235800			63996	1409	46690	47056	62344	62344					0.0637002223129457
YRFWLFHILLL	11	Unmodified	_YRFWLFHILLL_					0	0	0		ENSG00000183153|ENST00000578689|GJD3;nc|ENSG00000183153|Q8N144-2|GJD3	ENSG00000183153|ENST00000578689|GJD3	ENSG00000183153|ENST00000578689|GJD3	MSMS	A375_MHC_IP_R2	2	507.71197509765625	3	507.630735	1519.87038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.37	1	85.106	84.606	85.606	0.73601								0	0	0	0.16331	1	32071	32071		0.50596	0	1				63997	8470	46691	47057	62345	62345					0.1312364296711621
YRFWYNYRQRK	11	Unmodified	_YRFWYNYRQRK_					0	0	0		RXFP1|p.H693Y|1|0.45|ENSG00000171509|chr4:158651858-158651858|C/T|missense_variant	RXFP1|p.H693Y|1|0.45|ENSG00000171509|chr4:158651858-158651858|C/T|missense_variant	RXFP1|p.H693Y|1|0.45|ENSG00000171509|chr4:158651858-158651858|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	840.6900024414062	2	840.431316	1678.84808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.71	1	138.71	138.21	139.21	0								0	0	0	0.1636	1	53344	53344		0	0	1				63998	29101	46692	47058	62346	62346					0.03580811551341867
YRGDYDRFY	9	Unmodified	_YRGDYDRFY_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-SECPEP	A375_MHC_IP_R1	1	419.6192932128906	3	418.856122	1253.54654	0.19872	8.3233E-05	-0.29998	-0.00012565	-0.10126	-4.2415E-05	418.85598339443436	40.361	0.40767	40.361	40.151	40.559	0					12	7	2	0	0	0	0.77576	1	13888	13888		11.518	1.3673	1	1376700			63999	9625	46693	47059	62347	62347					-0.07009534538815387
YRGPANGF	8	Unmodified	_YRGPANGF_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENST00000531668.1_1_11:34117397-34120911:+|nuORF	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-MSMS	A375_MHC_IP_R1	1	441.6168212890625	2	441.216852	880.419151	-0.087096	-3.8428E-05	0.32381	0.00014287	0.23671	0.00010444	441.2169034100944	31.414	0.60917	31.414	31.16	31.769	0					34	11	4	0	0	0	0.16366	1	10035	10035		81.864	24.393	1	14308000			64000	4678	46694	47060	62348	62348					-0.025842106223308292
YRGPANGF	8	Unmodified	_YRGPANGF_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENST00000531668.1_1_11:34117397-34120911:+|nuORF	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-SECPEP	A375_MHC_IP_R2	2	441.6166687011719	2	441.216852	880.419151	-0.36427	-0.00016072	0.12752	5.6263E-05	-0.23675	-0.00010446	441.2168726988135	30.777	0.75766	31.495	31.114	31.872	0.71857					32	14	3	0	0	0	0.91495	1	10805	10805		24.674	10.092	1	16768000			64001	4678	46694	47060	62349	62349					-0.025842106223308292
YRGQRVKVF	9	Unmodified	_YRGQRVKVF_					0	0	0		ENSG00000134440|ENST00000256854|NARS1;nc|ENSG00000134440|O43776-2|NARS1;ENST00000411676.6_1_18:55274615-55283204:-|nuORF	ENSG00000134440|ENST00000256854|NARS1	ENSG00000134440|ENST00000256854|NARS1	MULTI-MSMS	A375_MHC_IP_R2	2	385.2579040527344	3	384.89273	1151.65636	-0.46186	-0.00017777	0.22618	8.7054E-05	-0.23569	-9.0714E-05	384.8928072176558	24.531	0.45625	25.175	24.958	25.414	0.64368					13	8	2	0	0	0	0.4875	1	8110	8110		20.415	6.0092	1	4206900			64002	4575	46695	47061	62350	62350					0.08659935591026624
YRHDLINQL	9	Unmodified	_YRHDLINQL_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	A375_MHC_IP_R1	1	391.61224365234375	3	391.212128	1170.61456	0.26087	0.00010205	0.28125	0.00011003	0.54211	0.00021208	391.21223780314773	47.68	0.5533	47.68	47.416	47.97	0					19	10	3	0	0	0	0.63622	1	16781	16781		14.218	0	1	2780500			64003	3905	46696	47062	62351	62351					0.036073351118375285
YRHDLINQL	9	Unmodified	_YRHDLINQL_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	A375_MHC_IP_R2	2	391.6121520996094	3	391.212128	1170.61456	0.0021589	8.446E-07	-0.10052	-3.9323E-05	-0.098357	-3.8478E-05	391.21225377637484	46.771	0.4057	47.532	47.361	47.766	0.76128					16	7	3	0	0	0	0.67539	1	17540	17540		20.581	8.3403	1	3627700			64004	3905	46696	47062	62352	62352					0.036073351118375285
YRHNWRKFHIL	11	Unmodified	_YRHNWRKFHIL_					0	0	0			REV__ENSG00000025293|ENST00000374012|PHF20	REV__ENSG00000025293|ENST00000374012|PHF20	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6474609375	3	523.956505	1568.84768	-0.46388	-0.00024306	-1.5008	-0.00078634	-1.9647	-0.0010294	523.957281120151	83.165	0.25322	83.165	83.024	83.277	0					5	4	2	0	0	0	1.001	1	30417	30417		0.50596	0	1	639130	+		64005	16286	46697	47063	62353	62353					0.08601436622166148
YRHNWRKFYIL	11	Unmodified	_YRHNWRKFYIL_					0	0	0			REV__PHF20|p.H46Y|1|0.08|ENSG00000025293|chr20:35842625-35842625|C/T|missense_variant	REV__PHF20|p.H46Y|1|0.08|ENSG00000025293|chr20:35842625-35842625|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	798.5235595703125	2	798.433327	1594.8521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.18	1	129.42	128.92	129.92	0.23946								0	0	0	0.16353	1	50762	50762		0.35063	0.043601	1		+		64006	27773	46698	47064	62354	62354					0.07846901045081722
YRHTFWQFRHK	11	Unmodified	_YRHTFWQFRHK_					0	0	0		XXYLT1|p.E271K|1|0.37|ENSG00000173950|chr3:195070086-195070086|C/T|missense_variant	XXYLT1|p.E271K|1|0.37|ENSG00000173950|chr3:195070086-195070086|C/T|missense_variant	XXYLT1|p.E271K|1|0.37|ENSG00000173950|chr3:195070086-195070086|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	803.4473876953125	2	803.412926	1604.8113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.55	1	124.55	124.05	125.05	0								0	0	0	0.16352	1	46957	46957		1.1933	0.23107	1				64007	30172	46699	47065	62355	62355					0.03308559725428495
YRIELLRKV	9	Unmodified	_YRIELLRKV_					0	0	0		ENSG00000124177|ENST00000373233|CHD6;ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9	ENSG00000124177|ENST00000373233|CHD6;ENSG00000177200|ENST00000447540|CHD9	ENSG00000177200|ENST00000447540|CHD9	MULTI-MSMS	A375_MHC_IP_R1	1	397.6520080566406	3	397.252036	1188.73428	0.39743	0.00015788	-0.34555	-0.00013727	0.051878	2.0609E-05	397.25189698923623	49.159	0.50629	49.159	48.933	49.439	0					15	9	2	0	0	0	0.030222	1	17383	17383		74.772	30.79	1	3546600			64008	8069;3877	46700	47066	62356	62356					0.1474594845642514
YRIELLRKV	9	Unmodified	_YRIELLRKV_					0	0	0		ENSG00000124177|ENST00000373233|CHD6;ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9	ENSG00000124177|ENST00000373233|CHD6;ENSG00000177200|ENST00000447540|CHD9	ENSG00000177200|ENST00000447540|CHD9	MULTI-MSMS	A375_MHC_IP_R2	2	397.6519775390625	3	397.252036	1188.73428	-0.0098577	-3.916E-06	-0.09124	-3.6245E-05	-0.1011	-4.0161E-05	397.25202360038855	48.096	0.45256	48.858	48.632	49.084	0.76128					12	8	2	0	0	0	0.034721	1	18091	18091		70.929	38.891	1	3194600			64009	8069;3877	46700	47066	62357	62357					0.1474594845642514
YRIPLNPYL	9	Unmodified	_YRIPLNPYL_					0	0	0		nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	MULTI-SECPEP	A375_MHC_IP_R1	1	575.2276611328125	2	574.826766	1147.63898	-0.21987	-0.00012639	0.087513	5.0305E-05	-0.13236	-7.6084E-05	574.8264274283072	95.993	0.71107	95.993	95.716	96.427	0					18	13	2	0	0	0	0.20567	1	35299	35299		46.021	30.174	1	1984500			64010	6489	46701	47067	62358	62358					0.07106595265372562
YRIPLNPYL	9	Unmodified	_YRIPLNPYL_					0	0	0		nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	MULTI-SECPEP	A375_MHC_IP_R2	2	575.2265625	2	574.826766	1147.63898	0.056068	3.2229E-05	0.22066	0.00012684	0.27672	0.00015907	574.8265119064988	95.035	0.50956	95.785	95.583	96.093	0.75045					21	9	3	0	0	0	0.50702	1	36147	36147		25.399	7.2643	1	1560600			64011	6489	46701	47067	62359	62359					0.07106595265372562
YRKAFESRL	9	Unmodified	_YRKAFESRL_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-SECPEP	A375_MHC_IP_R1	1	391.28662109375	3	390.552374	1168.63529	-0.016334	-6.3794E-06	0.79222	0.0003094	0.77588	0.00030302	390.552502885538	24.322	0.60746	24.322	23.94	24.547	0					15	11	2	0	0	0	0.50484	1	6897	6897		27.088	11.35	1	5602500			64012	1172	46702	47068	62360	62360					0.05771925491512775
YRKDFQQLL	9	Unmodified	_YRKDFQQLL_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6;ENST00000504674.1_1_5:39719945-39720791:-|nuORF	nc|ENSG00000102786|Q9UL03-3|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	MULTI-SECPEP	A375_MHC_IP_R1	1	606.2330932617188	2	605.83258	1209.65061	-0.35179	-0.00021313	0.40072	0.00024277	0.04893	2.9643E-05	605.8326700883492	53.419	0.30522	53.419	53.25	53.555	0					11	5	3	0	0	0	0.59098	1	19078	19078		27.629	0	1	2614800			64013	2393	46703	47069	62361	62361					0.054167922887017994
YRKDFQQLL	9	Unmodified	_YRKDFQQLL_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6;ENST00000504674.1_1_5:39719945-39720791:-|nuORF	nc|ENSG00000102786|Q9UL03-3|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	MULTI-MATCH	A375_MHC_IP_R2	2		2	605.83258	1209.65061	-0.86669	-0.00052507	-0.044263	-2.6816E-05	-0.91095	-0.00055188	605.8325008562597	52.558	0.40452	53.31	53.032	53.437	0.75225	-0.05403	-0.000439	NaN	27.629	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1877600			64014	2393	46703	47069							0.054167922887017994
YRKKWRKWVKQ	11	Unmodified	_YRKKWRKWVKQ_					0	0	0			REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	MSMS	A375_MHC_IP_R1	1	803.8098754882812	2	803.478069	1604.94158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.99	1	89.99	89.49	90.49	0								0	0	0	0.1636	1	33068	33068		0	0	1		+		64015	16780	46704	47070	62362	62362					0.16331155724424207
YRKKWRKWVKQ	11	Unmodified	_YRKKWRKWVKQ_					0	0	0			REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	MSMS	A375_MHC_IP_R2	2	803.4083862304688	2	803.478069	1604.94158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.922	1	89.654	89.154	90.154	0.7318								0	0	0	0.1636	1	33844	33844		0	0	1		+		64016	16780	46704	47070	62363	62363					0.16331155724424207
YRKKYVIYI	9	Unmodified	_YRKKYVIYI_					0	0	0		ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1;ENST00000415894.1_1_1:165788676-165788994:+|nuORF;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENST00000584906.5_1_17:8280884-8283916:-|nuORF	ENSG00000161970|ENST00000648839|RPL26	ENSG00000161970|ENST00000648839|RPL26	MULTI-MSMS	A375_MHC_IP_R1	1	416.3163146972656	3	415.916653	1244.72813	0.39041	0.00016238	-0.76842	-0.0003196	-0.37801	-0.00015722	415.9162112639441	42.372	0.65748	42.372	42.082	42.739	0					26	12	3	0	0	0	0.58047	1	14709	14709		10.8	1.8233	1	2686100			64017	1144	46705	47071	62364	62364					0.11555430224893826
YRKREWIKETF	11	Unmodified	_YRKREWIKETF_					0	0	0		ENSG00000113594|ENST00000453190|LIFR	ENSG00000113594|ENST00000453190|LIFR	ENSG00000113594|ENST00000453190|LIFR	MULTI-SECPEP	A375_MHC_IP_R2	2	519.9859008789062	3	519.284175	1554.8307	-0.97907	-0.00050842	0.31664	0.00016443	-0.66243	-0.00034399	519.2849028104869	71.807	0.50581	72.541	72.264	72.77	0.73421					11	9	2	0	0	0	1.0004	1	27247	27247		2.6312	0.37851	1	1795900			64018	3165	46706	47072	62365	62365					0.07547471225666413
YRKRKFYRQRK	11	Unmodified	_YRKRKFYRQRK_					0	0	0			REV__KMT2E|p.D495Rfs*20|1|0.13|ENSG00000005483|chr7:105090125-105090126|-/A|frameshift_variant	REV__KMT2E|p.D495Rfs*20|1|0.13|ENSG00000005483|chr7:105090125-105090126|-/A|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	544.0562744140625	3	543.658459	1627.95355	-0.93419	-0.00050788	-1.8396	-0.0010001	-2.7738	-0.001508	543.6576336316026	142.44	0.40274	142.44	142.24	142.64	0					13	7	2	0	0	0	1.0015	1	54661	54661		0	0	1	2808400	+		64019	26867	46707	47073	62366	62366					0.1646877246760141
YRKRKFYRQRK	11	Unmodified	_YRKRKFYRQRK_					0	0	0			REV__KMT2E|p.D495Rfs*20|1|0.13|ENSG00000005483|chr7:105090125-105090126|-/A|frameshift_variant	REV__KMT2E|p.D495Rfs*20|1|0.13|ENSG00000005483|chr7:105090125-105090126|-/A|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		3	543.658459	1627.95355	-0.62727	-0.00034102	-2.4223	-0.0013169	-3.0496	-0.0016579	543.6571294101384	142.55	0.45982	142.58	142.23	142.69	0.030746	0.067143	-0.0001377	NaN	0	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1881500	+		64020	26867	46707	47073							0.1646877246760141
YRLEYMRVLRS	11	Unmodified	_YRLEYMRVLRS_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	A375_MHC_IP_R2	2	743.8037719726562	2	743.403378	1484.7922	-0.80271	-0.00059674	1.3183	0.00098002	0.51558	0.00038328	743.4040981877985	132.52	0.81647	132.71	132.2	133.02	0.18953					28	15	3	0	0	0	0.73809	1	52154	52154		1.1933	0	1	2884600			64021	9791	46708	47074	62367	62367					0.06919842319507552
YRLFDREY	8	Unmodified	_YRLFDREY_					0	0	0			REV__LUC7L3|p.I200Nfs*11|1|0.39|ENSG00000108848|chr17:50744716-50744717|-/A|frameshift_variant	REV__LUC7L3|p.I200Nfs*11|1|0.39|ENSG00000108848|chr17:50744716-50744717|-/A|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	387.31707763671875	3	387.861096	1160.56146	-0.032805	-1.2724E-05	-0.010939	-4.2429E-06	-0.043744	-1.6966E-05	387.859863644922	41.706	0.41093	41.706	41.521	41.932	0					24	7	4	0	0	0	0.972	1	14421	14421		3.5965	0	1	2942600	+		64022	17560	46709	47075	62368	62368					-0.012400426708154555
YRLPVIGDEKI	11	Unmodified	_YRLPVIGDEKI_					0	0	0			REV__ENST00000587807.5_1_18:54270260-54293401:-|nuORF	REV__ENST00000587807.5_1_18:54270260-54293401:-|nuORF	MSMS	A375_MHC_IP_R2	2	434.9701232910156	3	434.918722	1301.73434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.669	1	28.347	27.847	28.847	0.67857								0	0	0	0.1628	1	9484	9484		4.1166	0.52395	1		+		64023	16947	46710	47076	62369	62369					0.09553903665732832
YRLWKSRQH	9	Unmodified	_YRLWKSRQH_					0	0	0		ENST00000371482.5_2_9:140343848-140347544:-|nuORF;nc|ENSG00000165802|Q6X4W1-4|NSMF;nc|ENSG00000165802|Q6X4W1-6|NSMF;nc|ENSG00000165802|Q6X4W1-3|NSMF;nc|ENSG00000165802|Q6X4W1-2|NSMF;ENSG00000165802|ENST00000371475|NSMF	ENST00000371482.5_2_9:140343848-140347544:-|nuORF	ENST00000371482.5_2_9:140343848-140347544:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	637.751220703125	2	637.349263	1272.68397	-0.75022	-0.00047815	1.369	0.00087254	0.61879	0.00039439	637.3501790453353	131.73	0.55573	131.92	131.7	132.25	0.18953					18	10	3	0	0	0	0.68382	1	51858	51858		12.241	4.0851	1	3350700			64024	6991	46711	47077	62370	62370					0.058538388512715755
YRLWKSRQH	9	Unmodified	_YRLWKSRQH_					0	0	0		ENST00000371482.5_2_9:140343848-140347544:-|nuORF;nc|ENSG00000165802|Q6X4W1-4|NSMF;nc|ENSG00000165802|Q6X4W1-6|NSMF;nc|ENSG00000165802|Q6X4W1-3|NSMF;nc|ENSG00000165802|Q6X4W1-2|NSMF;ENSG00000165802|ENST00000371475|NSMF	ENST00000371482.5_2_9:140343848-140347544:-|nuORF	ENST00000371482.5_2_9:140343848-140347544:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	637.349263	1272.68397	-0.933	-0.00059465	2.6482	0.0016878	1.7152	0.0010932	637.3509111482994	131.86	0.35236	131.86	131.78	132.13	0	-0.029519	0.00057113	NaN	12.241	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2216500			64025	6991	46711	47077							0.058538388512715755
YRMLAKRGGYV	11	Unmodified	_YRMLAKRGGYV_					0	0	0		ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	ENSG00000100644|ENST00000337138|HIF1A	ENSG00000100644|ENST00000337138|HIF1A	MSMS	A375_MHC_IP_R2	2	657.4284057617188	2	657.360982	1312.70741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.314	1	90.045	89.545	90.545	0.7318								0	0	0	0.16258	1	33990	33990		5.2969	0	1				64026	2206	46712	47078	62371	62371					0.06356516573578119
YRMNKRRYCFF	11	Unmodified	_YRMNKRRYCFF_					0	0	0			REV__ENST00000563158.1_1_16:46993297-46998617:-|nuORF	REV__ENST00000563158.1_1_16:46993297-46998617:-|nuORF	MSMS	A375_MHC_IP_R2	2	528.6237182617188	3	528.595591	1582.76494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.632	1	85.368	84.868	85.868	0.73601								0	0	0	0.16305	1	32173	32173		2.8433	1.3882	1		+		64027	26202	46713	47079	62372	62372					-0.00312964492491119
YRMYRQYCFYQ	11	Unmodified	_YRMYRQYCFYQ_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MSMS	A375_MHC_IP_R2	2	810.7859497070312	2	810.857946	1619.70134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.21	1	70.944	70.444	71.444	0.73421								0	0	0	0.16351	1	26614	26614		1.3295	1.0225	1				64028	1407	46714	47080	62373	62373					-0.08372369720245842
YRNQLLNIF	9	Unmodified	_YRNQLLNIF_					0	0	0		ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	MULTI-SECPEP	A375_MHC_IP_R1	1	591.2273559570312	2	590.827298	1179.64004	-0.29659	-0.00017524	0.49263	0.00029106	0.19604	0.00011582	590.8275839085745	103.6	0.50928	103.6	103.37	103.88	0					19	9	3	0	0	0	0.39388	1	38069	38069		39.957	0	1	2838900			64029	3443	46715	47081	62374	62374					0.05740809634266952
YRNRFWKEHH	10	Unmodified	_YRNRFWKEHH_					0	0	0		ENSG00000053371|ENST00000235835|AKR7A2	ENSG00000053371|ENST00000235835|AKR7A2	ENSG00000053371|ENST00000235835|AKR7A2	MSMS	A375_MHC_IP_R1	1	736.8678588867188	2	736.868351	1471.72215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.69	1	143.69	143.19	144.19	0								0	0	0	0.15624	1	55119	55119		1.3295	0.87119	1				64030	1246	46716	47082	62375	62375					0.0051572476590990846
YRPGHYDILY	10	Unmodified	_YRPGHYDILY_					0	0	0		ENSG00000167770|ENST00000538426|OTUB1;nc|ENSG00000167770|Q96FW1-2|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	MSMS	A375_MHC_IP_R2	2	433.2849426269531	3	432.8839	1295.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.496	1	30.195	29.695	30.695	0.69872								0	0	0	0.15531	1	10303	10303		1.7423	0.54893	1				64031	7222	46717	47083	62376	62376					-0.006117980909493781
YRPGSVAYV	9	Unmodified	_YRPGSVAYV_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-SECPEP	A375_MHC_IP_R1	1	506.9908447265625	2	506.266542	1010.51853	-0.20197	-0.00010225	-0.14255	-7.2168E-05	-0.34452	-0.00017442	506.2664293655031	42.614	0.86113	42.614	42.336	43.197	0					41	16	4	0	0	0	0.087712	1	14771	14771		75.761	24.906	1	40295000			64032	4335	46718	47084	62377	62377					0.013691872717458864
YRPGSVAYV	9	Unmodified	_YRPGSVAYV_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-SECPEP	A375_MHC_IP_R2	2	506.6659851074219	2	506.266542	1010.51853	-0.71677	-0.00036288	-0.059873	-3.0312E-05	-0.77664	-0.00039319	506.2664582731357	41.86	0.6644	42.634	42.3	42.964	0.77451					36	12	4	0	0	0	0.056023	1	15530	15530		66.457	15.602	1	51452000			64033	4335	46718	47084	62378	62378					0.013691872717458864
YRPRRLSLVP	10	Unmodified	_YRPRRLSLVP_					0	0	0		nc|ENSG00000140254|Q1HG43-2|DUOXA1	nc|ENSG00000140254|Q1HG43-2|DUOXA1	nc|ENSG00000140254|Q1HG43-2|DUOXA1	MSMS	A375_MHC_IP_R2	2	628.8028564453125	2	628.882939	1255.75132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.49	1	143.51	143.01	144.01	0.024414								0	0	0	0.15591	1	56074	56074		1.6526	0	1				64034	14638	46719	47085	62379	62379					0.13367869062199134
YRPWEKEFS	9	Unmodified	_YRPWEKEFS_					0	0	0		ENST00000318607.9_1_8:101715273-101715342:-|nuORF	ENST00000318607.9_1_8:101715273-101715342:-|nuORF	ENST00000318607.9_1_8:101715273-101715342:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	414.6259765625	3	414.536501	1240.58767	0.1236	5.1235E-05	-0.040804	-1.6915E-05	0.082794	3.4321E-05	414.53631275296715	27.002	0.39998	27.002	26.779	27.179	0					10	7	2	0	0	0	0.62591	1	8094	8094		13.615	0.75892	1	2529400			64035	10675	46720	47086	62380	62380					-0.02299773499339608
YRPWEKEFS	9	Unmodified	_YRPWEKEFS_					0	0	0		ENST00000318607.9_1_8:101715273-101715342:-|nuORF	ENST00000318607.9_1_8:101715273-101715342:-|nuORF	ENST00000318607.9_1_8:101715273-101715342:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	414.6257019042969	3	414.536501	1240.58767	-0.39366	-0.00016318	-0.23006	-9.5367E-05	-0.62371	-0.00025855	414.53618110712694	26.376	0.3559	27.035	26.805	27.161	0.65992					9	6	2	0	0	0	0.52905	1	8855	8855		18.373	9.9288	1	1485400			64036	10675	46720	47086	62381	62381					-0.02299773499339608
YRQKQVVIL	9	Unmodified	_YRQKQVVIL_					0	0	0		ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	MULTI-MSMS	A375_MHC_IP_R1	1	383.30474853515625	3	382.904636	1145.69208	0.70471	0.00026984	-0.4456	-0.00017062	0.2591	9.9211E-05	382.90454018786073	38.985	0.45765	38.985	38.73	39.187	0					20	8	3	0	0	0	0.36834	1	13291	13291		26.268	9.7023	1	6665900			64037	5356	46721	47087	62382	62382					0.12505973048041596
YRQKQVVIL	9	Unmodified	_YRQKQVVIL_					0	0	0		ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	MULTI-SECPEP	A375_MHC_IP_R1	1	574.25341796875	2	573.853316	1145.69208	0.16538	9.4903E-05	-0.1272	-7.2996E-05	0.038175	2.1907E-05	573.8531779453805	39.03	0.35573	39.03	38.78	39.136	0					13	6	3	0	0	0	0.30925	1	13307	13307		64.236	15.89	1	3700900			64038	5356	46721	47087	62383	62383					0.12505973048041596
YRQKQVVIL	9	Unmodified	_YRQKQVVIL_					0	0	0		ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	MULTI-MSMS	A375_MHC_IP_R2	2	383.3045959472656	3	382.904636	1145.69208	-0.3154	-0.00012077	0.25239	9.6642E-05	-0.063007	-2.4125E-05	382.9047272745478	37.968	0.5136	38.742	38.534	39.047	0.77451					19	9	3	0	0	0	0.57432	3	13935	13935;13947;13969		16.149	10.366	1	4204300			64039	5356	46721	47087	62384;62385;62386	62384					0.12505973048041596
YRQKQVVIL	9	Unmodified	_YRQKQVVIL_					0	0	0		ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	MULTI-MATCH	A375_MHC_IP_R2	2		2	573.853316	1145.69208	-0.44198	-0.00025363	0.018371	1.0543E-05	-0.42361	-0.00024309	573.8532935948824	37.938	0.36104	38.713	38.534	38.895	0.77451	-0.15865	0.00011336	NaN	64.236	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2841900			64040	5356	46721	47087							0.12505973048041596
YRQRLRERLWE	11	Unmodified	_YRQRLRERLWE_					0	0	0		ENSG00000084092|ENST00000264230|NOA1	ENSG00000084092|ENST00000264230|NOA1	ENSG00000084092|ENST00000264230|NOA1	MSMS	A375_MHC_IP_R1	1	802.9407958984375	2	802.942047	1603.86954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.38	1	103.38	102.88	103.88	0								0	0	0	0.1636	1	37974	37974		0	0	1				64041	1794	46722	47088	62387	62387					0.09176196580074247
YRQRWAWRTWQ	11	Unmodified	_YRQRWAWRTWQ_					0	0	0		ENST00000491400.5_1_6:35254110-35255623:+|nuORF;ENST00000469195.5_3_6:35254110-35258154:+|nuORF;ENST00000229405.8_1_6:35254110-35258558:+|nuORF	ENST00000491400.5_1_6:35254110-35255623:+|nuORF	ENST00000491400.5_1_6:35254110-35255623:+|nuORF	MSMS	A375_MHC_IP_R1	1	818.9555053710938	2	818.915833	1635.81711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.28	1	82.28	81.78	82.78	0								0	0	0	0.16354	1	30087	30087		0.30703	0.30703	1				64042	10135	46723	47089	62388	62388					0.024636582370931137
YRQWHAKIFV	10	Unmodified	_YRQWHAKIFV_					0	0	0		nc|ENSG00000164675|Q8NA54-2|IQUB;ENSG00000164675|ENST00000324698|IQUB	nc|ENSG00000164675|Q8NA54-2|IQUB	nc|ENSG00000164675|Q8NA54-2|IQUB	MSMS	A375_MHC_IP_R2	2	674.7689208984375	2	674.369664	1346.72478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.421	1	12.965	12.465	13.465	0.54443								0	0	0	0.15642	1	3833	3833		0	0	1				64043	6864	46724	47090	62389	62389					0.06528180170857922
YRRDVVKTY	9	Unmodified	_YRRDVVKTY_					0	0	0		nc|ENSG00000114268|Q16877-2|PFKFB4;nc|ENSG00000114268|Q16877-3|PFKFB4;ENSG00000114268|ENST00000232375|PFKFB4;ENST00000417753.5_1_3:48557182-48594149:-|nuORF;ENST00000496767.5_1_3:48586091-48599213:-|nuORF;ENST00000490115.5_1_3:48586091-48594264:-|nuORF;PFKFB4|p.S119Vfs*47|1|0.38|ENSG00000114268|chr3:48543606-48543606|G/-|frameshift_variant	nc|ENSG00000114268|Q16877-2|PFKFB4	nc|ENSG00000114268|Q16877-2|PFKFB4	MULTI-MSMS	A375_MHC_IP_R1	1	400.6434326171875	3	400.555895	1198.64586	-0.45769	-0.00018333	0.39943	0.00015999	-0.058262	-2.3337E-05	400.55603606544827	19.336	0.28278	19.336	19.238	19.521	0					9	5	2	0	0	0	0.39657	2	4780	4780;4805		24.882	3.2914	1	13769000			64044	3206	46725	47091	62390;62391	62390					0.05447908145947622
YRRKDGVFL	9	Unmodified	_YRRKDGVFL_					0	0	0		ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENSG00000125691|ENST00000479035|RPL23;ENST00000584912.5_1_17:37006588-37006753:-|nuORF;ENST00000320371.6_1_21:30369936-30370179:-|nuORF	ENST00000584583.1_1_17:37006387-37006753:-|nuORF	ENST00000584583.1_1_17:37006387-37006753:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	385.62060546875	3	385.220735	1152.64038	-0.085276	-3.285E-05	-0.010668	-4.1095E-06	-0.095944	-3.696E-05	385.2206923049904	29.919	0.50276	29.919	29.748	30.251	0					22	9	3	0	0	0	0.28079	1	9425	9425		32.037	12.412	1	35834000			64045	3979	46726	47092	62392	62392					0.07016229354144343
YRRKDGVFL	9	Unmodified	_YRRKDGVFL_					0	0	0		ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENSG00000125691|ENST00000479035|RPL23;ENST00000584912.5_1_17:37006588-37006753:-|nuORF;ENST00000320371.6_1_21:30369936-30370179:-|nuORF	ENST00000584583.1_1_17:37006387-37006753:-|nuORF	ENST00000584583.1_1_17:37006387-37006753:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	385.6202697753906	3	385.220735	1152.64038	-0.92462	-0.00035618	0.45414	0.00017495	-0.47047	-0.00018124	385.22084647328035	29.003	0.80152	29.702	29.534	30.335	0.69872					29	15	4	0	0	0	0.28079	1	10070	10070		32.037	7.1559	1	50462000			64046	3979	46726	47092	62393	62393					0.07016229354144343
YRRKWDRARFP	11	Unmodified	_YRRKWDRARFP_					0	0	0			REV__ENSG00000078589|ENST00000171757|P2RY10	REV__ENSG00000078589|ENST00000171757|P2RY10	MSMS	A375_MHC_IP_R1	1	775.8035888671875	2	775.9262	1549.83785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.68	1	126.68	126.18	127.18	0								0	0	0	0.16307	1	48415	48415		2.7352	0.23671	1		+		64047	16711	46727	47093	62394	62394					0.08492248616767029
YRRNFNYRRRR	11	Unmodified	_YRRNFNYRRRR_					0	0	0		ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	MSMS	A375_MHC_IP_R1	1	828.956298828125	2	828.956355	1655.89816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.78	1	144.78	144.28	145.28	0								0	0	0	0.1636	1	55514	55514		0	0	1				64048	1398	46728	47094	62395	62395					0.09644358999821634
YRRRAPKKKTR	11	Unmodified	_YRRRAPKKKTR_					0	0	0			REV__nc|ENSG00000163539|O75122-3|CLASP2	REV__nc|ENSG00000163539|O75122-3|CLASP2	MSMS	A375_MHC_IP_R2	2	730.85693359375	2	730.457668	1458.90078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	144.35	1	144.37	143.87	144.87	0.024414								0	0	0	0.1636	1	56386	56386		0	0	1		+		64049	27318	46729	47095	62396	62396					0.1896881440479774
YRRRFVQQ	8	Unmodified	_YRRRFVQQ_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;ASPM|p.G2986Vfs*7|1|0.1|ENSG00000066279|chr1:197096028-197096028|C/-|frameshift_variant	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	A375_MHC_IP_R1	1	385.9359436035156	3	384.884346	1151.63121	-0.036098	-1.3894E-05	-0.60564	-0.0002331	-0.64174	-0.000247	384.88408057572923	26.074	1.0133	26.074	25.765	26.779	0					52	19	4	0	0	0	0.7769	1	7732	7732		6.2058	1.1583	1	40824000			64050	1407	46730	47096	62397	62397					0.06145880788449176
YRRRRAPQPRQ	11	Unmodified	_YRRRRAPQPRQ_					0	0	0		ENSG00000167874|ENST00000301599|TMEM88	ENSG00000167874|ENST00000301599|TMEM88	ENSG00000167874|ENST00000301599|TMEM88	MULTI-MSMS	A375_MHC_IP_R2	2	495.6444396972656	3	495.287025	1482.83924	-0.76265	-0.00037773	0.77744	0.00038505	0.014785	7.3227E-06	495.28742696024636	19.357	0.55763	19.96	19.733	20.291	0.60308					20	10	2	0	0	0	0.73807	1	5937	5937		1.2148	0.10508	1	1458100			64051	7231	46731	47097	62398	62398					0.11713882705521428
YRRRRGVP	8	Unmodified	_YRRRRGVP_					0	0	0		ENST00000469908.5_2_16:2390982-2391318:+|nuORF	ENST00000469908.5_2_16:2390982-2391318:+|nuORF	ENST00000469908.5_2_16:2390982-2391318:+|nuORF	MSMS	A375_MHC_IP_R2	2	354.1856994628906	3	353.880936	1058.62098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.732	1	19.335	18.835	19.835	0.60308								0	0	0	0.16876	1	5587	5587		0	0	1				64052	12329	46732	47098	62399	62399					0.09401317853894398
YRRRRGVP	8	Unmodified	_YRRRRGVP_					0	0	0		ENST00000469908.5_2_16:2390982-2391318:+|nuORF	ENST00000469908.5_2_16:2390982-2391318:+|nuORF	ENST00000469908.5_2_16:2390982-2391318:+|nuORF	MSMS	A375_MHC_IP_R2	2	354.28387451171875	3	353.880936	1058.62098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.818	1	19.421	18.921	19.921	0.60308								0	0	0	0.16876	1	5616	5616		0	0	1				64053	12329	46732	47098	62400	62400					0.09401317853894398
YRRSVPTWL	9	Unmodified	_YRRSVPTWL_					0	0	0		ENSG00000110700|ENST00000525634|RPS13;ENST00000526895.5_1_11:17095982-17099246:-|nuORF;ENST00000534329.1_1_11:17098694-17099257:-|nuORF	ENSG00000110700|ENST00000525634|RPS13	ENSG00000110700|ENST00000525634|RPS13	MULTI-MSMS	A375_MHC_IP_R1	1	393.62103271484375	3	393.220735	1176.64038	0.18754	7.3745E-05	1.0129	0.00039829	1.2004	0.00047204	393.22127252871957	54.397	0.45558	54.397	54.163	54.619	0					14	8	3	0	0	0	0.60982	1	19476	19476		14.405	4.2548	1	2500400			64054	2940	46733	47099	62401	62401					0.05912229354134979
YRRSVPTWL	9	Unmodified	_YRRSVPTWL_					0	0	0		ENSG00000110700|ENST00000525634|RPS13;ENST00000526895.5_1_11:17095982-17099246:-|nuORF;ENST00000534329.1_1_11:17098694-17099257:-|nuORF	ENSG00000110700|ENST00000525634|RPS13	ENSG00000110700|ENST00000525634|RPS13	MULTI-MATCH	A375_MHC_IP_R2	2		3	393.220735	1176.64038	-0.71887	-0.00028267	0.5597	0.00022009	-0.15917	-6.2589E-05	393.22151875613855	53.433	0.61413	54.184	53.995	54.609	0.75105	-0.10647	-0.00046121	NaN	14.405	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2076100			64055	2940	46733	47099							0.05912229354134979
YRRTKRNRRRM	11	Unmodified	_YRRTKRNRRRM_					0	0	0			REV__ENST00000505792.1_1_5:99897758-99917066:+|nuORF	REV__ENST00000505792.1_1_5:99897758-99917066:+|nuORF	MSMS	A375_MHC_IP_R1	1	531.7237548828125	3	531.642814	1591.90661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.451	1	85.451	84.951	85.951	0								0	0	0	0.16358	1	31316	31316		0.094841	0	1		+		64056	21266	46734	47100	62402	62402					0.13433589644819222
YRRWNIGDRFR	11	Unmodified	_YRRWNIGDRFR_					0	0	0		ENSG00000146247|ENST00000275034|PHIP;PHIP|p.R1505Efs*9|1|0.47|ENSG00000146247|chr6:78946119-78946119|A/-|frameshift_variant	ENSG00000146247|ENST00000275034|PHIP	ENSG00000146247|ENST00000275034|PHIP	MSMS	A375_MHC_IP_R2	2	513.6227416992188	3	513.607764	1537.80146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.157	1	53.908	53.408	54.408	0.75105								0	0	0	0.16336	1	20054	20054		1.2148	0	1				64057	5612	46735	47101	62403	62403					0.05407371720048104
YRRYIRMYRFY	11	Unmodified	_YRRYIRMYRFY_					0	0	0			REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	MSMS	A375_MHC_IP_R1	1	843.935791015625	2	843.937919	1685.86129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127.25	1	127.25	126.75	127.75	0								0	0	0	0.1636	1	48710	48710		0	0	1		+		64058	21559	46736	47102	62404	62404					0.045789263390815904
YRRYIRMYRFY	11	Unmodified	_YRRYIRMYRFY_					0	0	0			REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	MULTI-SECPEP	A375_MHC_IP_R2	2	562.25439453125	3	562.961038	1685.86129	-0.46076	-0.00025939	-1.8928	-0.0010656	-2.3536	-0.001325	562.9601772821978	91.77	0.30322	92.504	92.376	92.68	0.7345					6	5	2	0	0	0	1.0015	1	34956	34956		0.094841	0	1	890210	+		64059	21559	46736	47102	62405	62405					0.045789263390815904
YRRYKHFDWLY	11	Unmodified	_YRRYKHFDWLY_					0	0	0		ENSG00000173548|ENST00000308527|SNX33	ENSG00000173548|ENST00000308527|SNX33	ENSG00000173548|ENST00000308527|SNX33	MULTI-MSMS	A375_MHC_IP_R1	1	550.0125732421875	3	549.612404	1645.81538	-0.40731	-0.00022386	0.414	0.00022754	0.0066956	3.68E-06	549.6126406213152	40.559	0.40736	40.559	40.355	40.762	0					20	7	4	0	0	0	0.73924	1	13966	13966		0.094841	0	1	4832900			64060	7808	46737	47103	62406	62406					0.018306044285054668
YRRYKHFDWLY	11	Unmodified	_YRRYKHFDWLY_					0	0	0		ENSG00000173548|ENST00000308527|SNX33	ENSG00000173548|ENST00000308527|SNX33	ENSG00000173548|ENST00000308527|SNX33	MSMS	A375_MHC_IP_R1	1	549.6077880859375	3	549.612404	1645.81538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.513	1	83.513	83.013	84.013	0								0	0	0	0.16334	1	30560	30560		1.3296	1.2348	1				64061	7808	46737	47103	62407	62407					0.018306044285054668
YRRYKHFDWLY	11	Unmodified	_YRRYKHFDWLY_					0	0	0		ENSG00000173548|ENST00000308527|SNX33	ENSG00000173548|ENST00000308527|SNX33	ENSG00000173548|ENST00000308527|SNX33	MULTI-SECPEP	A375_MHC_IP_R2	2	550.3466796875	3	549.612404	1645.81538	-0.82784	-0.00045499	0.1159	6.37E-05	-0.71194	-0.00039129	549.94698836991	39.895	0.40633	40.67	40.473	40.879	0.77451					17	7	3	0	0	0	1.0015	1	14775	14775		0.094841	0	1	5213400			64062	7808	46737	47103	62408	62408					0.018306044285054668
YRRYKHFDWLY	11	Unmodified	_YRRYKHFDWLY_					0	0	0		ENSG00000173548|ENST00000308527|SNX33	ENSG00000173548|ENST00000308527|SNX33	ENSG00000173548|ENST00000308527|SNX33	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	549.612404	1645.81538	-0.40731	-0.00022386	0.414	0.00022754	0.0066956	3.68E-06	549.6126406213152	40.559	0.40736	40.559	40.355	40.762	0	-0.05539	0.00014452	NaN	0.094841	20	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4832900			64063	7808	46737	47103							0.018306044285054668
YRSPELLVGD	10	Unmodified	_YRSPELLVGD_					0	0	0		nc|ENSG00000100490|Q00532-2|CDKL1;nc|ENSG00000100490|Q00532-3|CDKL1;ENSG00000100490|ENST00000395834|CDKL1	nc|ENSG00000100490|Q00532-2|CDKL1	nc|ENSG00000100490|Q00532-2|CDKL1	MULTI-SECPEP	A375_MHC_IP_R1	1	383.9364318847656	3	383.536389	1147.58734	0.24603	9.4362E-05	0.79399	0.00030453	1.04	0.00039889	383.5364963519746	39.458	0.55696	39.458	39.187	39.744	0					22	10	3	0	0	0	0.90513	1	13520	13520		10.899	3.4219	1	9433100			64064	14507	46738	47104	62409	62409					0.01944806780829822
YRSPELLVGD	10	Unmodified	_YRSPELLVGD_					0	0	0		nc|ENSG00000100490|Q00532-2|CDKL1;nc|ENSG00000100490|Q00532-3|CDKL1;ENSG00000100490|ENST00000395834|CDKL1	nc|ENSG00000100490|Q00532-2|CDKL1	nc|ENSG00000100490|Q00532-2|CDKL1	MULTI-SECPEP	A375_MHC_IP_R2	2	383.9187927246094	3	383.536389	1147.58734	-0.47661	-0.0001828	1.0484	0.00040212	0.57183	0.00021932	383.53663053065105	38.545	0.61044	39.319	39.047	39.658	0.77451					25	11	3	0	0	0	0.90513	1	14245	14245		10.899	3.4219	1	7784200			64065	14507	46738	47104	62410	62410					0.01944806780829822
YRSVKEEE	8	Unmodified	_YRSVKEEE_					0	0	0			REV__nc|ENSG00000186635|Q96P48-2|ARAP1	REV__nc|ENSG00000186635|Q96P48-2|ARAP1	MULTI-MSMS	A375_MHC_IP_R1	1	520.6549682617188	2	520.256371	1038.49819	-0.29103	-0.00015141	-0.94985	-0.00049417	-1.2409	-0.00064557	520.2560060271193	109.37	0.81451	109.37	108.97	109.78	0					29	15	3	0	0	0	0.77643	1	40084	40084		7.9102	0	1	2931400	+		64066	21978	46739	47105	62411	62411					-0.019520281786981286
YRTDMIQAL	9	Unmodified	_YRTDMIQAL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF;ENST00000572445.1_1_17:1564285-1564453:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	A375_MHC_IP_R1	1	556.183837890625	2	555.784241	1109.55393	-0.22456	-0.0001248	-0.055496	-3.0844E-05	-0.28005	-0.00015565	555.7842021516528	69.152	0.70984	69.152	68.769	69.478	0					30	13	3	0	0	0	0.54812	1	25041	25041		31.268	7.4786	1	12218000			64067	7864	46740	47106	62412	62412					0.0035348173723832588
YRTDMIQAL	9	Unmodified	_YRTDMIQAL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF;ENST00000572445.1_1_17:1564285-1564453:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	A375_MHC_IP_R2	2	556.2188720703125	2	555.784241	1109.55393	-0.66048	-0.00036708	0.25342	0.00014085	-0.40706	-0.00022624	555.7843483602503	68.36	0.55787	69.095	68.765	69.323	0.73511					25	10	3	0	0	0	0.27742	1	25901	25901		43.772	3.8227	1	12680000			64068	7864	46740	47106	62413	62413					0.0035348173723832588
YRTGWVYGRS	10	Unmodified	_YRTGWVYGRS_					0	0	0		ENST00000520371.5_1_6:100010789-100016588:-|nuORF	ENST00000520371.5_1_6:100010789-100016588:-|nuORF	ENST00000520371.5_1_6:100010789-100016588:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	415.591552734375	3	415.543878	1243.60981	0.23398	9.7231E-05	-1.6593	-0.0006895	-1.4253	-0.00059227	415.8776692808246	23.218	0.30575	23.218	23.024	23.33	0					11	5	3	0	0	0	0.71267	1	6361	6361		6.6235	0.3891	1	3002200			64069	12993	46741	47107	62414	62414					-0.002255490309153174
YRTQRRSHWRR	11	Unmodified	_YRTQRRSHWRR_					0	0	0		ENST00000547860.1_3_12:96606536-96607565:+|nuORF	ENST00000547860.1_3_12:96606536-96607565:+|nuORF	ENST00000547860.1_3_12:96606536-96607565:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	401.2835998535156	4	401.221266	1600.85596	-0.28881	-0.00011588	-3.8853	-0.0015589	-4.1741	-0.0016747	401.21956413551726	18.932	0.61362	19.535	19.423	20.037	0.60308					23	13	3	0	0	0	0.73698	1	5723	5723		2.2527	1.0379	1	10013000			64070	13348	46742	47108	62415	62415					0.07956383591454141
YRVHTGEKP	9	Unmodified	_YRVHTGEKP_					0	0	0		nc|ENSG00000109906|Q05516-2|ZBTB16;ENSG00000109906|ENST00000335953|ZBTB16;ENST00000535379.1_1_11:114107968-114121274:+|nuORF;ENSG00000011590|ENST00000392197|ZBTB32	nc|ENSG00000109906|Q05516-2|ZBTB16	nc|ENSG00000109906|Q05516-2|ZBTB16	MULTI-SECPEP	A375_MHC_IP_R1	1	543.1929321289062	2	543.788173	1085.56179	-0.45287	-0.00024626	-3.6016	-0.0019585	-4.0544	-0.0022048	544.2869338758086	42.438	0.35373	42.438	42.233	42.587	0					10	6	2	0	0	0	0.63327	1	14759	14759		24.021	0	1	929380			64071	2900	46743	47109	62416	62416					0.022433770490579263
YRVHTGEKP	9	Unmodified	_YRVHTGEKP_					0	0	0		nc|ENSG00000109906|Q05516-2|ZBTB16;ENSG00000109906|ENST00000335953|ZBTB16;ENST00000535379.1_1_11:114107968-114121274:+|nuORF;ENSG00000011590|ENST00000392197|ZBTB32	nc|ENSG00000109906|Q05516-2|ZBTB16	nc|ENSG00000109906|Q05516-2|ZBTB16	MULTI-MATCH	A375_MHC_IP_R2	2		2	543.788173	1085.56179	-0.93842	-0.0005103	-1.0665	-0.00057996	-2.0049	-0.0010903	543.7876531865616	41.557	0.40578	42.331	42.098	42.504	0.77451	-0.053606	0.00046667	NaN	24.021	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1117400			64072	2900	46743	47109							0.022433770490579263
YRVLARRVT	9	Unmodified	_YRVLARRVT_					0	0	0		nc|ENSG00000143033|Q9Y483-2|MTF2;nc|ENSG00000143033|Q9Y483-3|MTF2;ENSG00000143033|ENST00000370298|MTF2;nc|ENSG00000143033|Q9Y483-4|MTF2	nc|ENSG00000143033|Q9Y483-2|MTF2	nc|ENSG00000143033|Q9Y483-2|MTF2	MULTI-MSMS	A375_MHC_IP_R2	2	378.57427978515625	3	378.568247	1132.68291	-0.22104	-8.368E-05	0.1397	5.2887E-05	-0.081339	-3.0792E-05	378.56830319041813	21.23	0.86116	21.849	21.169	22.03	0.61932					41	16	3	0	0	0	0.72761	1	6425	6425		4.5289	0.65253	1	3364000			64073	5341	46744	47110	62417	62417					0.1218762448236248
YRWLERFLLYD	11	Unmodified	_YRWLERFLLYD_					0	0	0			REV__KLHDC10|p.P126L|1|0.21|ENSG00000128607|chr7:130116568-130116568|C/T|missense_variant	REV__KLHDC10|p.P126L|1|0.21|ENSG00000128607|chr7:130116568-130116568|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	787.8117065429688	2	787.411726	1572.8089	-0.80145	-0.00063107	0.90904	0.00071579	0.10759	8.4717E-05	787.4122366895754	43.681	0.35258	44.45	44.278	44.631	0.7691					13	6	3	0	0	0	0.73906	1	16321	16321		0.26902	0.26902	1	2302700	+		64074	26856	46745	47111	62418	62418					0.04540666477123523
YRYGDIRTY	9	Unmodified	_YRYGDIRTY_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MSMS	A375_MHC_IP_R1	1	402.9213562011719	3	402.86825	1205.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.22	1	37.22	36.72	37.72	0								0	0	0	0.15486	1	12531	12531		10.899	6.3701	1				64075	1386	46746	47112	62419	62419					-0.011646576420844212
YRYGQLIEI	9	Unmodified	_YRYGQLIEI_					0	0	0		ENST00000512024.5_1_5:893053-908577:+|nuORF;ENSG00000071539|ENST00000166345|TRIP13	ENST00000512024.5_1_5:893053-908577:+|nuORF	ENST00000512024.5_1_5:893053-908577:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	578.7146606445312	2	577.813856	1153.61316	-0.28501	-0.00016468	-0.48759	-0.00028174	-0.77261	-0.00044642	577.8135633502213	87.147	0.6607	87.147	86.881	87.542	0					27	12	4	0	0	0	0.35581	1	31941	31941		26.884	11.036	1	7964600			64076	1513	46747	47113	62420	62420					0.04249701023081798
YRYGQLIEI	9	Unmodified	_YRYGQLIEI_					0	0	0		ENST00000512024.5_1_5:893053-908577:+|nuORF;ENSG00000071539|ENST00000166345|TRIP13	ENST00000512024.5_1_5:893053-908577:+|nuORF	ENST00000512024.5_1_5:893053-908577:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	577.1257934570312	2	577.813856	1153.61316	-0.034746	-2.0077E-05	-0.3542	-0.00020466	-0.38894	-0.00022474	577.8135699101277	86.29	0.71448	87.023	86.693	87.407	0.733					22	13	2	0	0	0	0.50484	1	32786	32786		24.021	10.115	1	6090400			64077	1513	46747	47113	62421	62421					0.04249701023081798
YRYLDLRSF	9	Unmodified	_YRYLDLRSF_					0	0	0		ENSG00000117593|ENST00000649689|DARS2	ENSG00000117593|ENST00000649689|DARS2	ENSG00000117593|ENST00000649689|DARS2	MULTI-MSMS	A375_MHC_IP_R1	1	411.62945556640625	3	411.552262	1231.63496	0.060882	2.5056E-05	0.12852	5.2892E-05	0.1894	7.7948E-05	411.55223914764946	64.664	0.60961	64.664	64.242	64.851	0					20	11	2	0	0	0	0.6656	1	23274	23274		6.6304	3.7871	1	2338700			64078	3496	46748	47114	62422	62422					0.028405057716327065
YRYLDLRSF	9	Unmodified	_YRYLDLRSF_					0	0	0		ENSG00000117593|ENST00000649689|DARS2	ENSG00000117593|ENST00000649689|DARS2	ENSG00000117593|ENST00000649689|DARS2	MSMS	A375_MHC_IP_R2	2	411.6294250488281	3	411.552262	1231.63496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.352	1	64.092	63.592	64.592	0.74022								0	0	0	0.15069	1	24016	24016		14.405	5.9611	1				64079	3496	46748	47114	62423	62423					0.028405057716327065
YRYMHFLENQV	11	Unmodified	_YRYMHFLENQV_					0	0	0		ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	MSMS	A375_MHC_IP_R1	1	500.4744567871094	3	500.57485	1498.70272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.059	1	87.059	86.559	87.559	0								0	0	0	0.16179	1	31938	31938		4.7159	3.5011	1				64080	9903	46749	47115	62424	62424					-0.026684123598215592
YRYMHFLENQV	11	Unmodified	_YRYMHFLENQV_					0	0	0		ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	MSMS	A375_MHC_IP_R2	2	500.32745361328125	3	500.57485	1498.70272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.148	1	77.891	77.391	78.391	0.74293								0	0	0	0.16179	1	29295	29295		4.7159	2.2811	1				64081	9903	46749	47115	62425	62425					-0.026684123598215592
YRYMHFLENQV	11	Unmodified	_YRYMHFLENQV_					0	0	0		ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	MSMS	A375_MHC_IP_R2	2	500.474853515625	3	500.57485	1498.70272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.971	1	84.71	84.21	85.21	0.73962								0	0	0	0.16179	1	31919	31919		4.7159	2.2811	1				64082	9903	46749	47115	62426	62426					-0.026684123598215592
YRYMHFLENQV	11	Unmodified	_YRYMHFLENQV_					0	0	0		ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	MSMS	A375_MHC_IP_R2	2	500.4747009277344	3	500.57485	1498.70272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.798	1	86.534	86.034	87.034	0.73601								0	0	0	0.16179	1	32624	32624		4.7159	0	1				64083	9903	46749	47115	62427	62427					-0.026684123598215592
YRYMHFLENQV	11	Unmodified	_YRYMHFLENQV_					0	0	0		ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	MSMS	A375_MHC_IP_R2	2	500.4748229980469	3	500.57485	1498.70272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.955	1	87.688	87.188	88.188	0.733								0	0	0	0.16179	1	33068	33068		4.7159	2.2811	1				64084	9903	46749	47115	62428	62428					-0.026684123598215592
YRYMHFLENQV	11	Unmodified	_YRYMHFLENQV_					0	0	0		ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	MSMS	A375_MHC_IP_R2	2	500.4749755859375	3	500.57485	1498.70272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.34	1	105.11	104.61	105.61	0.76308								0	0	0	0.16265	1	39482	39482		2.2527	0.92309	1				64085	9903	46749	47115	62429	62429					-0.026684123598215592
YRYPRPASV	9	Unmodified	_YRYPRPASV_					0	0	0		nc|ENSG00000104812|P13807-2|GYS1;ENSG00000104812|ENST00000323798|GYS1	nc|ENSG00000104812|P13807-2|GYS1	nc|ENSG00000104812|P13807-2|GYS1	MULTI-MSMS	A375_MHC_IP_R1	1	370.6014709472656	3	370.201452	1107.58253	0.20055	7.4245E-05	0.091073	3.3715E-05	0.29163	0.00010796	370.2013780065657	28.864	0.60813	28.864	28.541	29.149	0					28	11	3	0	0	0	0.6656	1	8937	8937		10.151	10.151	1	4995900			64086	2538	46750	47116	62430	62430					0.03303967428678334
YRYPRPASV	9	Unmodified	_YRYPRPASV_					0	0	0		nc|ENSG00000104812|P13807-2|GYS1;ENSG00000104812|ENST00000323798|GYS1	nc|ENSG00000104812|P13807-2|GYS1	nc|ENSG00000104812|P13807-2|GYS1	MULTI-MATCH	A375_MHC_IP_R2	2		3	370.201452	1107.58253	0.1288	4.7682E-05	-0.13491	-4.9946E-05	-0.0061154	-2.2639E-06	370.2013943308965	28.16	0.7113	28.839	28.452	29.163	0.67857	-0.012722	-0.00012946	NaN	10.151	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5886200			64087	2538	46750	47116							0.03303967428678334
YRYRKFHFWLQ	11	Unmodified	_YRYRKFHFWLQ_					0	0	0			REV__ENSG00000105298|ENST00000429344|CACTIN	REV__ENSG00000105298|ENST00000429344|CACTIN	MSMS	A375_MHC_IP_R1	1	822.4331665039062	2	822.433327	1642.8521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.34	1	109.34	108.84	109.84	0								0	0	0	0.1636	1	40106	40106		0	0	1		+		64088	17371	46751	47117	62431	62431					0.05638901045085731
YRYRSESQD	9	Unmodified	_YRYRSESQD_					0	0	0		MTFR1|p.D289E|1|0.28|ENSG00000066855|chr8:65707945-65707945|T/G|missense_variant	MTFR1|p.D289E|1|0.28|ENSG00000066855|chr8:65707945-65707945|T/G|missense_variant	MTFR1|p.D289E|1|0.28|ENSG00000066855|chr8:65707945-65707945|T/G|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	401.9776611328125	3	401.851148	1202.53161	-0.093238	-3.7468E-05	0.15698	6.3084E-05	0.063746	2.5616E-05	401.85119115624815	21.479	0.40606	21.479	21.25	21.656	0					16	7	3	0	0	0	0.75274	1	5708	5708		2.2828	2.2828	1	4203400			64089	14412	46752	47118	62432	62432					-0.06155026406804609
YRYTRNLVDQE	11	Unmodified	_YRYTRNLVDQE_					0	0	0		CDO1|p.G66E|1|0.13|ENSG00000129596|chr5:115813232-115813232|C/T|missense_variant	CDO1|p.G66E|1|0.13|ENSG00000129596|chr5:115813232-115813232|C/T|missense_variant	CDO1|p.G66E|1|0.13|ENSG00000129596|chr5:115813232-115813232|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	486.65093994140625	3	486.244157	1455.71064	-0.33802	-0.00016436	-0.71898	-0.0003496	-1.057	-0.00051396	486.243712239113	65.221	0.55917	65.221	64.903	65.462	0					25	10	3	0	0	0	0.73459	1	23679	23679		2.084	2.084	1	5883300			64090	355	46753	47119	62433	62433					0.0010143816125491867
YSAADEETY	9	Unmodified	_YSAADEETY_					0	0	0			REV__nc|ENSG00000108946|P10644-2|PRKAR1A	REV__nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	A375_MHC_IP_R2	2	525.6624145507812	2	524.708919	1047.40329	-0.70364	-0.0003692	-0.25518	-0.0001339	-0.95882	-0.0005031	524.708740310173	34.652	1.367	35.415	35.068	36.435	0.76338					73	26	5	0	0	0	0.55818	1	12428	12428		16.942	1.0951	1	84001000	+		64091	17563	46754	47120	62434	62434					-0.11852006440562945
YSAAWAEYY	9	Unmodified	_YSAAWAEYY_					0	0	0		nc|ENSG00000088247|Q92945|KHSRP;ENSG00000088247|ENST00000600480|KHSRP;ENST00000492724.1_1_1:78411324-78420943:-|nuORF;ENST00000487684.1_1_1:78414836-78421090:-|nuORF;ENSG00000162613|ENST00000370768|FUBP1;nc|ENSG00000162613|Q96AE4-2|FUBP1	nc|ENSG00000088247|Q92945|KHSRP;ENSG00000162613|ENST00000370768|FUBP1	nc|ENSG00000088247|Q92945|KHSRP	MULTI-SECPEP	A375_MHC_IP_R2	2	562.6400756835938	2	562.24019	1122.46583	-0.34706	-0.00019513	0.48959	0.00027527	0.14254	8.0141E-05	562.2405874980178	94.516	0.65922	95.261	94.818	95.477	0.74474					17	12	2	0	0	0	0.62767	1	35947	35947		16.942	7.5949	1	1261100			64092	1886;6560	46755	47121	62435	62435					-0.0905081558173606
YSADREDLY	9	Unmodified	_YSADREDLY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	A375_MHC_IP_R1	1	565.626708984375	2	566.251286	1130.48802	-0.48237	-0.00027314	0.70725	0.00040048	0.22488	0.00012734	566.2515490897296	36.971	0.30105	36.971	36.795	37.096	0					8	5	2	0	0	0	0.77003	1	12379	12379		11.495	6.7387	1	2743400			64093	7864	46756	47122	62436	62436					-0.0720063590395057
YSADREDLY	9	Unmodified	_YSADREDLY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	A375_MHC_IP_R2	2	566.69873046875	2	566.251286	1130.48802	-0.59006	-0.00033412	0.013725	7.7716E-06	-0.57634	-0.00032635	566.2512682265697	36.361	0.40704	37.131	36.901	37.308	0.7709					11	7	2	0	0	0	0.44183	1	13199	13199		22.658	7.8198	1	2790700			64094	7864	46756	47122	62437	62437					-0.0720063590395057
YSADREDLY	9	Unmodified	_YSADREDLY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	566.251286	1130.48802	-0.59006	-0.00033412	0.013725	7.7716E-06	-0.57634	-0.00032635	566.2512682265697	36.361	0.40704	37.131	36.901	37.308	0.7709	0.080415	-0.00022833	NaN	22.658	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2790700			64095	7864	46756	47122							-0.0720063590395057
YSAGYPFQ	8	Unmodified	_YSAGYPFQ_					0	0	0			REV__nc|ENSG00000049618|Q8NFD5-1|ARID1B	REV__nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-SECPEP	A375_MHC_IP_R2	2	467.1106872558594	2	466.711068	931.407583	-0.93046	-0.00043426	0.60426	0.00028201	-0.32621	-0.00015224	466.71127737700016	56.305	0.51043	57.055	56.745	57.255	0.75015					14	9	2	0	0	0	0.94479	1	21328	21328		13.508	0	1	945700	+		64096	16381	46757	47123	62438	62438					-0.06086452436329637
YSALREIAF	9	Unmodified	_YSALREIAF_					0	0	0		nc|ENSG00000107669|O95260-2|ATE1;ENSG00000107669|ENST00000224652|ATE1	nc|ENSG00000107669|O95260-2|ATE1	nc|ENSG00000107669|O95260-2|ATE1	MULTI-MSMS	A375_MHC_IP_R1	1	535.6865844726562	2	535.287474	1068.5604	-0.71637	-0.00038346	0.21695	0.00011613	-0.49942	-0.00026733	535.2875493184484	81.377	1.6227	81.377	80.948	82.571	0					73	31	4	0	0	0	0.0083527	1	29665	29665		128.93	67.575	1	65209000			64097	2748	46758	47124	62439	62439					0.028857429602794582
YSALREIAF	9	Unmodified	_YSALREIAF_					0	0	0		nc|ENSG00000107669|O95260-2|ATE1;ENSG00000107669|ENST00000224652|ATE1	nc|ENSG00000107669|O95260-2|ATE1	nc|ENSG00000107669|O95260-2|ATE1	MULTI-MSMS	A375_MHC_IP_R2	2	535.68701171875	2	535.287474	1068.5604	-0.85499	-0.00045767	0.22903	0.0001226	-0.62596	-0.00033507	535.2875436600168	80.431	1.371	81.176	80.759	82.13	0.74474					63	26	4	0	0	0	0.0023519	1	30482	30482		140.63	69.5	1	56743000			64098	2748	46758	47124	62440	62440					0.028857429602794582
YSAQDSALL	9	Unmodified	_YSAQDSALL_					0	0	0		LAMA5|p.H3154Y|1|0.51|ENSG00000130702|chr20:62312217-62312217|G/A|missense_variant	LAMA5|p.H3154Y|1|0.51|ENSG00000130702|chr20:62312217-62312217|G/A|missense_variant	LAMA5|p.H3154Y|1|0.51|ENSG00000130702|chr20:62312217-62312217|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	484.6650085449219	2	484.24019	966.465826	-0.91451	-0.00044284	0.10448	5.0595E-05	-0.81002	-0.00039224	484.2400220933189	60.238	0.96565	60.983	60.448	61.414	0.74503					29	18	3	0	0	0	0.5339	1	22667	22667		18.135	0	1	4893300			64099	14281	46759	47125	62441	62441					-0.018748155817092993
YSATPNYTY	9	Unmodified	_YSATPNYTY_					0	0	0		ENSG00000198794|ENST00000425597|SCAMP5;nc|ENSG00000198794|Q8TAC9-2|SCAMP5;nc|ENSG00000198794|Q8TAC9-3|SCAMP5	ENSG00000198794|ENST00000425597|SCAMP5	ENSG00000198794|ENST00000425597|SCAMP5	MULTI-MSMS	A375_MHC_IP_R1	1	540.63720703125	2	540.237647	1078.46074	-0.58366	-0.00031532	0.54704	0.00029553	-0.036625	-1.9786E-05	540.2376561946428	47.442	0.91193	47.442	47.159	48.071	0					54	17	4	0	0	0	0.2487	1	16654	16654		34.402	6.7729	1	70390000			64100	9327	46760	47126	62442	62442					-0.0753511944433285
YSCENSETL	9	Unmodified	_YSCENSETL_					0	0	0		TBC1D4|p.D1195N|1|0.45|ENSG00000136111|chr13:75289014-75289014|C/T|missense_variant	TBC1D4|p.D1195N|1|0.45|ENSG00000136111|chr13:75289014-75289014|C/T|missense_variant	TBC1D4|p.D1195N|1|0.45|ENSG00000136111|chr13:75289014-75289014|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	523.6110229492188	2	523.210772	1044.40699	-0.38507	-0.00020147	1.1457	0.00059944	0.76063	0.00039797	523.2113556156636	62.702	0.56385	62.702	62.505	63.069	0					14	10	2	0	0	0	0.60101	1	22669	22669		14.838	2.3067	1	2009900			64101	29307	46761	47127	62443	62443					-0.11343659938347628
YSCSCTNGPY	10	Unmodified	_YSCSCTNGPY_					0	0	0		ENST00000406053.5_1_2:53941691-53943747:-|nuORF	ENST00000406053.5_1_2:53941691-53943747:-|nuORF	ENST00000406053.5_1_2:53941691-53943747:-|nuORF	MSMS	A375_MHC_IP_R1	1	547.6270751953125	2	547.699517	1093.38448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.475	1	47.475	46.975	47.975	0								0	0	0	0.15372	1	16703	16703		8.7454	0.83525	1				64102	11599	46762	47128	62444	62444					-0.15847582607625554
YSCSGSCG	8	Unmodified	_YSCSGSCG_					0	0	0		ENST00000334464.6_1_10:119134395-119134557:-|nuORF	ENST00000334464.6_1_10:119134395-119134557:-|nuORF	ENST00000334464.6_1_10:119134395-119134557:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	763.5674438476562	1	763.238551	762.231275	-0.84165	-0.00064238	1.7918	0.0013676	0.95019	0.00072522	763.2388601916955	119.28	0.61057	119.81	119.38	119.99	0.5321					17	11	2	0	0	0	0.972	1	45407	45407		0	0	1	19605000			64103	10794	46763	47129	62445	62445					-0.1593515293342307
YSDAFLNDSY	10	Unmodified	_YSDAFLNDSY_					0	0	0		nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1;ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000101972|ENST00000371145|STAG2	ENSG00000101972|ENST00000371145|STAG2	MULTI-SECPEP	A375_MHC_IP_R1	1	598.1505737304688	2	597.751118	1193.48768	-0.52433	-0.00031342	-0.048114	-2.876E-05	-0.57244	-0.00034218	597.750980505316	86.958	0.65962	86.958	86.629	87.289	0					34	12	4	0	0	0	0.42334	1	31863	31863		51.63	30.093	1	8483900			64104	2340;3521	46764	47130	62446	62446					-0.10132055623807901
YSDAFLNDSY	10	Unmodified	_YSDAFLNDSY_					0	0	0		nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1;ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000101972|ENST00000371145|STAG2	ENSG00000101972|ENST00000371145|STAG2	MULTI-SECPEP	A375_MHC_IP_R2	2	598.1509399414062	2	597.751118	1193.48768	-0.40357	-0.00024124	0.37332	0.00022315	-0.030254	-1.8084E-05	597.751261352298	86.445	0.61297	87.178	86.845	87.458	0.733					29	11	3	0	0	0	0.50381	1	32821	32821		47.594	28.232	1	5866800			64105	2340;3521	46764	47130	62447	62447					-0.10132055623807901
YSDCYDFWVN	10	Unmodified	_YSDCYDFWVN_					0	0	0		nc|ENSG00000198945|Q96JM7-2|L3MBTL3;ENSG00000198945|ENST00000361794|L3MBTL3	nc|ENSG00000198945|Q96JM7-2|L3MBTL3	nc|ENSG00000198945|Q96JM7-2|L3MBTL3	MULTI-MSMS	A375_MHC_IP_R2	2	656.164306640625	2	656.252971	1310.49139	-0.79477	-0.00052157	-2.2242	-0.0014596	-3.0189	-0.0019812	656.2515603143098	42.914	0.40406	43.687	43.472	43.876	0.7724					11	7	2	0	0	0	0.70329	1	15931	15931		10.824	1.4408	1	1059400			64106	9380	46765	47131	62448	62448					-0.1514370912159393
YSDEPGTDRP	10	Unmodified	_YSDEPGTDRP_					0	0	0			REV__nc|ENSG00000139926|Q96NE9-3|FRMD6	REV__nc|ENSG00000139926|Q96NE9-3|FRMD6	MULTI-MSMS	A375_MHC_IP_R2	2	569.2267456054688	2	568.746367	1135.47818	-0.36995	-0.00021041	-4.1265	-0.0023469	-4.4965	-0.0025573	569.2452398645847	80.262	1.0154	81.007	80.607	81.622	0.74474					27	19	2	0	0	0	0.69306	1	30630	30630		13.906	1.3745	1	4045000	+		64107	19185	46766	47132	62449	62449					-0.08413823909336315
YSDERDEVPV	10	Unmodified	_YSDERDEVPV_					0	0	0			REV__B3GALNT2|p.P109S|1|0.31|ENSG00000162885|chr1:235489204-235489204|G/A|missense_variant	REV__B3GALNT2|p.P109S|1|0.31|ENSG00000162885|chr1:235489204-235489204|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	605.17626953125	2	604.775125	1207.5357	-0.30526	-0.00018461	1.9026	0.0011507	1.5974	0.00096606	604.7762412746873	61.968	0.41037	61.968	61.686	62.097	0					13	7	2	0	0	0	0.87043	1	22402	22402		20.415	1.0526	1	1783500	+		64108	15492	46767	47133	62450	62450					-0.05976981703770434
YSDFFTDCY	9	Unmodified	_YSDFFTDCY_					0	0	0		nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF	nc|ENSG00000129351|Q12906-2|ILF3	nc|ENSG00000129351|Q12906-2|ILF3	MULTI-MSMS	A375_MHC_IP_R2	2	1160.824951171875	1	1160.4241	1159.41683	0.32832	0.00038099	-0.33149	-0.00038467	-0.0031665	-3.6745E-06	1160.4230508488888	115.97	1.1187	116.66	116.09	117.21	0.68999					37	21	3	0	0	0	0.0021165	2	43856	43856;43965		156.16	81.733	1	19007000			64109	14595	46768	47134	62451;62452	62451					-0.15650471932985965
YSDFFTDCY	9	Unmodified	_YSDFFTDCY_					0	0	0		nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF	nc|ENSG00000129351|Q12906-2|ILF3	nc|ENSG00000129351|Q12906-2|ILF3	MULTI-MATCH	A375_MHC_IP_R1	1		1	1160.4241	1159.41683	0.3083	0.00035776	0.83279	0.00096639	1.1411	0.0013241	1160.4248597309072	116.55	0.81532	116.55	116.24	117.06	0	-0.051364	0.00047928	NaN	156.16	30	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16090000			64110	14595	46768	47134							-0.15650471932985965
YSDFPFHEDY	10	Unmodified	_YSDFPFHEDY_					0	0	0		ENST00000475780.5_1_1:171285408-171306524:+|nuORF;ENSG00000076258|ENST00000367749|FMO4	ENST00000475780.5_1_1:171285408-171306524:+|nuORF	ENST00000475780.5_1_1:171285408-171306524:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	662.1258544921875	2	660.264393	1318.51423	-0.64606	-0.00042657	0.18345	0.00012113	-0.4626	-0.00030544	660.2644558475962	80.807	0.91313	80.807	80.39	81.303	0					60	17	5	0	0	0	0.70329	1	29422	29422		10.824	7.8287	1	16241000			64111	1633	46769	47135	62453	62453					-0.13228366732460017
YSDFPFHEDY	10	Unmodified	_YSDFPFHEDY_					0	0	0		ENST00000475780.5_1_1:171285408-171306524:+|nuORF;ENSG00000076258|ENST00000367749|FMO4	ENST00000475780.5_1_1:171285408-171306524:+|nuORF	ENST00000475780.5_1_1:171285408-171306524:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	660.663330078125	2	660.264393	1318.51423	-0.89342	-0.00058989	0.10258	6.7728E-05	-0.79084	-0.00052216	660.264330848455	80.292	0.80898	81.036	80.556	81.365	0.74474					50	15	5	0	0	0	0.024081	1	30408	30408		99.755	82.642	1	18911000			64112	1633	46769	47135	62454	62454					-0.13228366732460017
YSDGLGGNSLY	11	Unmodified	_YSDGLGGNSLY_					0	0	0		nc|ENSG00000167081|P40426-3|PBX3;nc|ENSG00000167081|P40426-5|PBX3;ENSG00000167081|ENST00000373489|PBX3	nc|ENSG00000167081|P40426-3|PBX3	nc|ENSG00000167081|P40426-3|PBX3	MULTI-SECPEP	A375_MHC_IP_R1	1	573.6586303710938	2	573.259111	1144.50367	-0.23361	-0.00013392	0.15781	9.0467E-05	-0.0758	-4.3453E-05	573.2590129201016	74.806	0.71053	74.806	74.4	75.11	0					30	13	3	0	0	0	0.46316	1	27245	27245		51.415	20.779	1	3127400			64113	7152	46770	47136	62455	62455					-0.06280349386884154
YSDGLGGNSLY	11	Unmodified	_YSDGLGGNSLY_					0	0	0		nc|ENSG00000167081|P40426-3|PBX3;nc|ENSG00000167081|P40426-5|PBX3;ENSG00000167081|ENST00000373489|PBX3	nc|ENSG00000167081|P40426-3|PBX3	nc|ENSG00000167081|P40426-3|PBX3	MULTI-MSMS	A375_MHC_IP_R2	2	573.6596069335938	2	573.259111	1144.50367	-0.25364	-0.0001454	-0.50134	-0.0002874	-0.75498	-0.0004328	573.2588607208603	74.213	0.66042	74.95	74.604	75.264	0.73751					29	12	3	0	0	0	0.28899	1	28161	28161		47.594	20.711	1	3800600			64114	7152	46770	47136	62456	62456					-0.06280349386884154
YSDGNQYSY	9	Unmodified	_YSDGNQYSY_					0	0	0			REV__tr|U7STD3|U7STD3_FUSNUElongationfactorPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=efpPE=3SV=1	REV__tr|U7STD3|U7STD3_FUSNUElongationfactorPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=efpPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	550.1748046875	2	548.714536	1095.41452	-0.8602	-0.000472	0.15398	8.4494E-05	-0.70622	-0.00038751	548.7146222520291	39.419	1.4746	40.194	39.607	41.082	0.77451					82	28	4	0	0	0	0.58047	1	14404	14404		15.847	7.937	1	110390000	+		64115	28476	46771	47137	62457	62457					-0.12937184346424146
YSDGYGRVY	9	Unmodified	_YSDGYGRVY_					0	0	0		ENST00000359369.8_1_22:36140254-36146490:-|nuORF;nc|ENSG00000100320|O43251-3|RBFOX2;nc|ENSG00000100320|O43251-5|RBFOX2;nc|ENSG00000100320|O43251-10|RBFOX2;nc|ENSG00000100320|O43251-2|RBFOX2;nc|ENSG00000100320|O43251|RBFOX2;ENSG00000100320|ENST00000695854|RBFOX2;nc|ENSG00000100320|O43251-6|RBFOX2;nc|ENSG00000100320|O43251-8|RBFOX2	ENST00000359369.8_1_22:36140254-36146490:-|nuORF	ENST00000359369.8_1_22:36140254-36146490:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	540.6428833007812	2	540.243264	1078.47197	-0.50933	-0.00027516	0.098185	5.3044E-05	-0.41115	-0.00022212	540.2432966864274	35.289	0.66318	35.289	35.013	35.676	0					30	12	3	0	0	0	0.0096896	2	11684	11634;11684		110.67	68.58	1	31634000			64116	2158	46772	47138	62458;62459	62459					-0.06412297350175322
YSDGYGRVY	9	Unmodified	_YSDGYGRVY_					0	0	0		ENST00000359369.8_1_22:36140254-36146490:-|nuORF;nc|ENSG00000100320|O43251-3|RBFOX2;nc|ENSG00000100320|O43251-5|RBFOX2;nc|ENSG00000100320|O43251-10|RBFOX2;nc|ENSG00000100320|O43251-2|RBFOX2;nc|ENSG00000100320|O43251|RBFOX2;ENSG00000100320|ENST00000695854|RBFOX2;nc|ENSG00000100320|O43251-6|RBFOX2;nc|ENSG00000100320|O43251-8|RBFOX2	ENST00000359369.8_1_22:36140254-36146490:-|nuORF	ENST00000359369.8_1_22:36140254-36146490:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	540.6425170898438	2	540.243264	1078.47197	-1.0391	-0.00056134	0.092864	5.0169E-05	-0.94619	-0.00051117	540.2432737202762	34.637	0.65879	35.401	35.119	35.778	0.76338					28	12	3	0	0	0	0.0098926	1	12472	12472		118.07	75.974	1	35605000			64117	2158	46772	47138	62460	62460					-0.06412297350175322
YSDHPSGGSY	10	Unmodified	_YSDHPSGGSY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	A375_MHC_IP_R1	1	535.6145629882812	2	535.214703	1068.41485	-0.78906	-0.00042231	0.34858	0.00018656	-0.44048	-0.00023575	535.214850454887	19.648	0.40674	19.648	19.471	19.877	0					26	7	5	0	0	0	2.5254E-05	1	4906	4906		155.03	62.373	1	65888000			64118	5675	46773	47139	62461	62461					-0.11661764626546756
YSDHPSGGSY	10	Unmodified	_YSDHPSGGSY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	A375_MHC_IP_R2	2	535.614013671875	2	535.214703	1068.41485	-1.0883	-0.00058248	-0.16524	-8.8437E-05	-1.2536	-0.00067092	535.2145573624942	19.005	0.24981	19.608	19.483	19.733	0.60308					11	4	3	0	0	0	0.0062039	1	5766	5766		103.35	43.28	1	38626000			64119	5675	46773	47139	62462	62462					-0.11661764626546756
YSDHQPSGPY	10	Unmodified	_YSDHQPSGPY_					0	0	0		nc|ENSG00000100146|P56693|SOX10;chr22:37984441-37987345|453|15.29|0.34|5.48|-|ENST00000360880|SOX10,SOX10	nc|ENSG00000100146|P56693|SOX10	nc|ENSG00000100146|P56693|SOX10	MULTI-MSMS	A375_MHC_IP_R1	1	576.1433715820312	2	575.743628	1149.4727	-0.15711	-9.0455E-05	-0.40031	-0.00023048	-0.55742	-0.00032093	575.7434816411429	25.12	0.50851	25.12	25.002	25.511	0					22	9	3	0	0	0	0.011463	1	7312	7312		111.31	88.161	1	8237800			64120	471	46774	47140	62463	62463					-0.09605502701128898
YSDHQPSGPY	10	Unmodified	_YSDHQPSGPY_					0	0	0		nc|ENSG00000100146|P56693|SOX10;chr22:37984441-37987345|453|15.29|0.34|5.48|-|ENST00000360880|SOX10,SOX10	nc|ENSG00000100146|P56693|SOX10	nc|ENSG00000100146|P56693|SOX10	MULTI-MSMS	A375_MHC_IP_R2	2	576.1431274414062	2	575.743628	1149.4727	-0.56387	-0.00032465	-0.16652	-9.5875E-05	-0.7304	-0.00042052	575.7434544961063	24.704	0.55831	25.347	25.11	25.668	0.64368					20	10	3	0	0	0	0.0070192	1	8169	8169		132.13	108.99	1	8015000			64121	471	46774	47140	62464	62464					-0.09605502701128898
YSDHQPSGPYY	11	Unmodified	_YSDHQPSGPYY_					0	0	0		nc|ENSG00000100146|P56693|SOX10;chr22:37984441-37987345|453|15.29|0.34|5.48|-|ENST00000360880|SOX10,SOX10	nc|ENSG00000100146|P56693|SOX10	nc|ENSG00000100146|P56693|SOX10	MULTI-MSMS	A375_MHC_IP_R1	1	658.1766967773438	2	657.275292	1312.53603	-0.39646	-0.00026058	0.18779	0.00012343	-0.20866	-0.00013715	657.2750927262916	35.038	0.55909	35.038	34.81	35.369	0					24	10	3	0	0	0	0.0015281	1	11604	11604		97.741	81.592	1	9784900			64122	471	46775	47141	62465	62465					-0.10773561983887703
YSDHQPSGPYY	11	Unmodified	_YSDHQPSGPYY_					0	0	0		nc|ENSG00000100146|P56693|SOX10;chr22:37984441-37987345|453|15.29|0.34|5.48|-|ENST00000360880|SOX10,SOX10	nc|ENSG00000100146|P56693|SOX10	nc|ENSG00000100146|P56693|SOX10	MULTI-MSMS	A375_MHC_IP_R2	2	657.674560546875	2	657.275292	1312.53603	-1.1512	-0.00075668	0.65454	0.00043021	-0.49669	-0.00032646	657.2752210746922	34.417	0.55961	35.169	34.955	35.514	0.75225					24	10	3	0	0	0	0.00028738	1	12404	12404		125.18	107.03	1	7565500			64123	471	46775	47141	62466	62466					-0.10773561983887703
YSDISGGGHPY	11	Unmodified	_YSDISGGGHPY_					0	0	0		ENSG00000106771|ENST00000374586|TMEM245;nc|ENSG00000106771|Q9H330-3|TMEM245	ENSG00000106771|ENST00000374586|TMEM245	ENSG00000106771|ENST00000374586|TMEM245	MULTI-MSMS	A375_MHC_IP_R2	2	576.6878662109375	2	576.751453	1151.48835	-0.18523	-0.00010683	-1.0496	-0.00060534	-1.2348	-0.00071217	576.7510647994769	30.54	0.55443	31.258	30.962	31.517	0.71857					32	10	4	0	0	0	0.72728	1	10828	10828		11.495	2.1116	1	10344000			64124	2710	46776	47142	62467	62467					-0.0813321618406917
YSDKEFAGSY	10	Unmodified	_YSDKEFAGSY_					0	0	0		ENSG00000109436|ENST00000442267|TBC1D9;ENST00000514787.1_1_4:141591792-141598206:-|nuORF	ENSG00000109436|ENST00000442267|TBC1D9	ENSG00000109436|ENST00000442267|TBC1D9	MULTI-SECPEP	A375_MHC_IP_R1	1	584.1542358398438	2	583.753661	1165.49277	-0.4658	-0.00027191	0.48876	0.00028531	0.022955	1.34E-05	583.7538905855309	39.871	0.35538	39.871	39.643	39.999	0					12	6	2	0	0	0	0.13439	1	13679	13679		66.683	40.415	1	3917500			64125	2868	46777	47143	62468	62468					-0.08335751761183019
YSDKEFAGSY	10	Unmodified	_YSDKEFAGSY_					0	0	0		ENSG00000109436|ENST00000442267|TBC1D9;ENST00000514787.1_1_4:141591792-141598206:-|nuORF	ENSG00000109436|ENST00000442267|TBC1D9	ENSG00000109436|ENST00000442267|TBC1D9	MULTI-SECPEP	A375_MHC_IP_R2	2	584.153076171875	2	583.753661	1165.49277	-0.57165	-0.0003337	-0.3478	-0.00020303	-0.91944	-0.00053673	583.7534619198154	39.207	0.45941	39.981	39.76	40.219	0.77451					12	8	2	0	0	0	0.097312	1	14476	14476		79.427	41.251	1	2984800			64126	2868	46777	47143	62469	62469					-0.08335751761183019
YSDKHGRCG	9	Carbamidomethyl (C)	_YSDKHGRC(Carbamidomethyl (C))G_	YSDKHGRC(1)G		YSDKHGRC(42)G		0	1	0		ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MULTI-MSMS	A375_MHC_IP_R2	2	540.65576171875	2	540.23799	1078.46143	-0.65552	-0.00035414	-0.044846	-2.4227E-05	-0.70036	-0.00037836	540.2376577682157	46.827	1.2735	47.588	47.258	48.532	0.76128					58	24	4	0	0	0	0.14922	1	17544	17544		41.84	7.4379	1	62368000			64127	3043	46778	47144	62470	62470	21				-0.07466603276247952
YSDKYFDEH	9	Unmodified	_YSDKYFDEH_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-SECPEP	A375_MHC_IP_R1	1	601.7142944335938	2	602.251286	1202.48802	-0.26033	-0.00015678	-0.17938	-0.00010803	-0.43971	-0.00026482	602.2510408483192	37.581	0.46037	37.581	37.351	37.812	0					20	8	3	0	0	0	0.74412	1	12634	12634		14.838	4.7643	1	9590800			64128	3864	46779	47145	62471	62471					-0.10512635903955925
YSDKYFDEHY	10	Unmodified	_YSDKYFDEHY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	A375_MHC_IP_R1	1	456.59100341796875	3	456.191059	1365.55135	-0.55131	-0.0002515	0.3868	0.00017646	-0.1645	-7.5046E-05	456.1912177575407	41.276	0.60882	41.276	41.013	41.622	0					29	11	4	0	0	0	0.0081946	2	14221	14174;14221		106.37	75.934	1	10770000			64129	3864	46780	47146	62472;62473	62473					-0.11680695186714729
YSDKYFDEHY	10	Unmodified	_YSDKYFDEHY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-SECPEP	A375_MHC_IP_R1	1	684.1828002929688	2	683.78295	1365.55135	-0.93049	-0.00063625	0.51133	0.00034964	-0.41915	-0.00028661	683.7834342653638	41.31	0.45689	41.31	41.013	41.47	0					12	8	2	0	0	0	0.23508	1	14275	14275		91.085	85.353	1	2710000			64130	3864	46780	47146	62474	62474					-0.11680695186714729
YSDKYFDEHY	10	Unmodified	_YSDKYFDEHY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-SECPEP	A375_MHC_IP_R2	2	456.5909423828125	3	456.191059	1365.55135	-0.38816	-0.00017707	0.13652	6.2279E-05	-0.25164	-0.00011479	456.1911314263344	40.637	0.45777	41.412	41.183	41.641	0.77451					28	8	4	0	0	0	0.07526	1	15052	15052		97.284	73.32	1	12172000			64131	3864	46780	47146	62475	62475					-0.11680695186714729
YSDKYFDEHY	10	Unmodified	_YSDKYFDEHY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-SECPEP	A375_MHC_IP_R2	2	684.1827392578125	2	683.78295	1365.55135	-0.79679	-0.00054483	0.37642	0.00025739	-0.42037	-0.00028744	683.7830140429783	40.647	0.35603	41.421	41.234	41.59	0.77451					16	6	4	0	0	0	0.028861	1	15084	15084		125.18	115.03	1	3996000			64132	3864	46780	47146	62476	62476					-0.11680695186714729
YSDKYGLGY	9	Unmodified	_YSDKYGLGY_					0	0	0		ENSG00000166851|ENST00000300093|PLK1;ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENST00000564794.1_1_16:23700038-23701081:+|nuORF	ENSG00000166851|ENST00000300093|PLK1	ENSG00000166851|ENST00000300093|PLK1	MULTI-MSMS	A375_MHC_IP_R1	1	533.7052612304688	2	533.248015	1064.48148	-0.59018	-0.00031471	0.039675	2.1156E-05	-0.5505	-0.00029355	533.2481185410677	47.442	4.0116	47.442	47.107	51.119	0					208	78	7	0	0	0	0.0037351	7	16681	16629;16681;16805;16848;17076;17301;17541		137.42	79.952	1	1381000000			64133	7119	46781	47147	62477;62478;62479;62480;62481;62482;62483	62478					-0.0481852906466429
YSDKYGLGY	9	Unmodified	_YSDKYGLGY_					0	0	0		ENSG00000166851|ENST00000300093|PLK1;ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENST00000564794.1_1_16:23700038-23701081:+|nuORF	ENSG00000166851|ENST00000300093|PLK1	ENSG00000166851|ENST00000300093|PLK1	MULTI-MSMS	A375_MHC_IP_R2	2	533.6478881835938	2	533.248015	1064.48148	-0.55212	-0.00029442	-0.0068788	-3.6681E-06	-0.559	-0.00029809	533.2480836532318	46.826	4.1619	47.588	46.953	51.115	0.76127					220	81	7	0	0	0	0.0053789	5	17687	17462;17687;17915;18137;18378		163.04	108.26	1	1288200000			64134	7119	46781	47147	62484;62485;62486;62487;62488	62485					-0.0481852906466429
YSDLHAFYY	9	Unmodified	_YSDLHAFYY_					0	0	0		nc|ENSG00000185090|Q5VSG8-3|MANEAL;ENSG00000185090|ENST00000373045|MANEAL	nc|ENSG00000185090|Q5VSG8-3|MANEAL	nc|ENSG00000185090|Q5VSG8-3|MANEAL	MULTI-SECPEP	A375_MHC_IP_R1	1	589.62744140625	2	589.761289	1177.50803	-0.40185	-0.000237	0.41526	0.0002449	0.01341	7.9088E-06	589.7613015178318	76.851	1.2717	76.851	76.522	77.793	0					61	24	5	0	0	0	0.010931	1	28061	28061		125.62	89.58	1	41458000			64135	8640	46782	47148	62489	62489					-0.0736284017334583
YSDLHAFYY	9	Unmodified	_YSDLHAFYY_					0	0	0		nc|ENSG00000185090|Q5VSG8-3|MANEAL;ENSG00000185090|ENST00000373045|MANEAL	nc|ENSG00000185090|Q5VSG8-3|MANEAL	nc|ENSG00000185090|Q5VSG8-3|MANEAL	MULTI-SECPEP	A375_MHC_IP_R2	2	589.6279907226562	2	589.761289	1177.50803	-0.5545	-0.00032702	0.43179	0.00025465	-0.12271	-7.237E-05	589.7613126378164	76.173	0.81333	76.913	76.538	77.352	0.74052					54	15	5	0	0	0	0.040439	1	28955	28955		92.822	60.517	1	39778000			64136	8640	46782	47148	62490	62490					-0.0736284017334583
YSDLVTLTK	9	Unmodified	_YSDLVTLTK_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	A375_MHC_IP_R2	2	520.6865234375	2	520.28714	1038.55973	-1.1327	-0.00058935	0.23962	0.00012467	-0.89311	-0.00046467	520.2872470058704	53.585	0.61589	54.336	54.097	54.712	0.75105					18	11	3	0	0	0	0.31609	1	20256	20256		29.437	16.906	1	2402900			64137	5172	46783	47149	62491	62491					0.04198903520546082
YSDPESIIGGY	11	Unmodified	_YSDPESIIGGY_					0	0	0		ENSG00000106066|ENST00000265394|CPVL	ENSG00000106066|ENST00000265394|CPVL	ENSG00000106066|ENST00000265394|CPVL	MULTI-MSMS	A375_MHC_IP_R1	1	600.6779174804688	2	600.774593	1199.53463	-0.28391	-0.00017056	0.99906	0.00060021	0.71515	0.00042965	600.7746650818095	97.275	0.75754	97.275	96.883	97.641	0					34	14	4	0	0	0	0.43635	1	35838	35838		36.127	12.106	1	4328600			64138	2665	46784	47150	62492	62492					-0.05715196072651452
YSDPESIIGGY	11	Unmodified	_YSDPESIIGGY_					0	0	0		ENSG00000106066|ENST00000265394|CPVL	ENSG00000106066|ENST00000265394|CPVL	ENSG00000106066|ENST00000265394|CPVL	MULTI-MSMS	A375_MHC_IP_R2	2	601.1740112304688	2	600.774593	1199.53463	-0.62258	-0.00037403	0.64582	0.000388	0.023245	1.3965E-05	600.7745362143658	96.765	1.3677	97.521	97.013	98.381	0.75586					39	16	3	0	0	0	0.00018555	2	36690	36679;36690		131.27	97.484	1	4851700			64139	2665	46784	47150	62493;62494	62494					-0.05715196072651452
YSDPKSLET	9	Unmodified	_YSDPKSLET_					0	0	0		ENSG00000121064|ENST00000262288|SCPEP1;SCPEP1|p.A401V|1|0.86|ENSG00000121064|chr17:57002087-57002087|C/T|missense_variant	ENSG00000121064|ENST00000262288|SCPEP1	ENSG00000121064|ENST00000262288|SCPEP1	MULTI-SECPEP	A375_MHC_IP_R1	1	520.3923950195312	2	520.250754	1038.48696	-0.64218	-0.0003341	-0.087322	-4.5429E-05	-0.7295	-0.00037953	520.2505966668904	27.153	0.40408	27.153	27.027	27.432	0					13	7	2	0	0	0	0.025037	1	8185	8185		90.135	51.959	1	6026100			64140	3706	46785	47151	62495	62495					-0.03074850272855656
YSDPKSLET	9	Unmodified	_YSDPKSLET_					0	0	0		ENSG00000121064|ENST00000262288|SCPEP1;SCPEP1|p.A401V|1|0.86|ENSG00000121064|chr17:57002087-57002087|C/T|missense_variant	ENSG00000121064|ENST00000262288|SCPEP1	ENSG00000121064|ENST00000262288|SCPEP1	MULTI-MSMS	A375_MHC_IP_R2	2	520.6502075195312	2	520.250754	1038.48696	-0.99657	-0.00051846	-0.13713	-7.1343E-05	-1.1337	-0.00058981	520.250626874213	26.646	0.408	27.306	27.109	27.517	0.65992					14	7	2	0	0	0	0.12748	1	9067	9067		45.74	11.338	1	5032100			64141	3706	46785	47151	62496	62496					-0.03074850272855656
YSDPQGVPY	9	Unmodified	_YSDPQGVPY_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-SECPEP	A375_MHC_IP_R1	1	513.6322021484375	2	513.232364	1024.45018	-0.50632	-0.00025986	0.027601	1.4166E-05	-0.47872	-0.00024569	513.2323795932388	54.942	0.45658	54.942	54.619	55.075	0					19	8	3	0	0	0	0.67483	1	19630	19630		14.838	3.198	1	2702300			64142	3678	46786	47152	62497	62497					-0.06107102098746964
YSDPSVLYM	9	Oxidation (M)	_YSDPSVLYM(Oxidation (M))_		YSDPSVLYM(1)		YSDPSVLYM(60)	0	0	1		ENST00000487617.5_1_2:240002789-240024568:-|nuORF;nc|ENSG00000068024|P56524-2|HDAC4;nc|ENSG00000068024|P56524|HDAC4;ENSG00000068024|ENST00000543185|HDAC4	ENST00000487617.5_1_2:240002789-240024568:-|nuORF	ENST00000487617.5_1_2:240002789-240024568:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	546.1412963867188	2	545.741708	1089.46886	-0.65431	-0.00035709	0.30458	0.00016622	-0.34973	-0.00019086	545.7419161910738	68.59	0.66022	68.59	68.159	68.819	0					38	12	5	0	0	0	0.060021	3	24825	24807;24825;24836		60.39	35.716	1	4243300			64143	1449	46787	47153	62498;62499;62500	62499		41			-0.07229308519231381
YSDPSVLYM	9	Oxidation (M)	_YSDPSVLYM(Oxidation (M))_		YSDPSVLYM(1)		YSDPSVLYM(54)	0	0	1		ENST00000487617.5_1_2:240002789-240024568:-|nuORF;nc|ENSG00000068024|P56524-2|HDAC4;nc|ENSG00000068024|P56524|HDAC4;ENSG00000068024|ENST00000543185|HDAC4	ENST00000487617.5_1_2:240002789-240024568:-|nuORF	ENST00000487617.5_1_2:240002789-240024568:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	546.6555786132812	2	545.741708	1089.46886	-0.70616	-0.00038538	0.14055	7.6702E-05	-0.56562	-0.00030868	545.7416270539493	68.028	0.81415	68.763	68.307	69.121	0.73512					33	15	3	0	0	0	0.083809	1	25742	25742		53.576	28.902	1	4154400			64144	1449	46787	47153	62501	62501		41			-0.07229308519231381
YSDPYVKTY	9	Unmodified	_YSDPYVKTY_					0	0	0		ENSG00000272636|ENST00000613549|DOC2B;ENST00000564233.5_1_16:30017553-30018576:-|nuORF;ENST00000561671.5_1_16:30017707-30020344:-|nuORF;ENST00000564357.5_1_16:30017509-30018480:-|nuORF;ENSG00000149927|ENST00000350119|DOC2A	ENSG00000272636|ENST00000613549|DOC2B	ENSG00000272636|ENST00000613549|DOC2B	MULTI-SECPEP	A375_MHC_IP_R1	1	568.6848754882812	2	568.268947	1134.52334	-0.72036	-0.00040936	0.67756	0.00038504	-0.042803	-2.4323E-05	568.2692579560426	41.495	0.45901	41.495	41.215	41.674	0					17	8	3	0	0	0	0.24655	1	14299	14299		63.227	27.1	1	4324100			64145	9993	46788	47154	62502	62502					-0.038539733761354
YSDPYVKTY	9	Unmodified	_YSDPYVKTY_					0	0	0		ENSG00000272636|ENST00000613549|DOC2B;ENST00000564233.5_1_16:30017553-30018576:-|nuORF;ENST00000561671.5_1_16:30017707-30020344:-|nuORF;ENST00000564357.5_1_16:30017509-30018480:-|nuORF;ENSG00000149927|ENST00000350119|DOC2A	ENSG00000272636|ENST00000613549|DOC2B	ENSG00000272636|ENST00000613549|DOC2B	MULTI-MSMS	A375_MHC_IP_R2	2	569.2186279296875	2	568.268947	1134.52334	-0.55549	-0.00031567	0.46549	0.00026452	-0.090005	-5.1147E-05	568.2693167983182	40.867	0.56005	41.641	41.285	41.845	0.77451					21	10	3	0	0	0	0.39434	1	15145	15145		24.991	5.734	1	2659200			64146	9993	46788	47154	62503	62503					-0.038539733761354
YSDQIESTF	9	Unmodified	_YSDQIESTF_					0	0	0			REV__ENST00000518940.5_1_8:103855961-103870248:-|nuORF	REV__ENST00000518940.5_1_8:103855961-103870248:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	544.6778564453125	2	545.240386	1088.46622	-0.54874	-0.0002992	-1.4944	-0.0008148	-2.0431	-0.001114	545.2389688538585	74.159	1.4703	74.159	73.792	75.262	0					51	28	3	0	0	0	0.69504	1	27263	27263		12.532	5.2423	1	2715900	+		64147	25680	46789	47155	62504	62504					-0.07447440652504156
YSDRQPPCSR	10	Unmodified	_YSDRQPPCSR_					0	0	0			REV__RBMXL2|p.G357S|2|0.5|ENSG00000170748|chr11:7090189-7090189|G/A|missense_variant	REV__RBMXL2|p.G357S|2|0.5|ENSG00000170748|chr11:7090189-7090189|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	605.1763916015625	2	604.777479	1207.5404	-0.75438	-0.00045623	-0.29617	-0.00017912	-1.0506	-0.00063535	604.7770927238805	61.328	0.50343	62.073	61.869	62.372	0.74504					15	9	2	0	0	0	0.60608	1	23270	23270		20.415	1.0526	1	1907100	+		64148	27876	46790	47156	62505	62505					-0.055063760419898244
YSDRTFAPLPE	11	Unmodified	_YSDRTFAPLPE_					0	0	0		nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33;ENST00000492227.1_1_1:114939070-114940443:-|nuORF;ENST00000478032.1_1_1:114940272-114940509:-|nuORF	nc|ENSG00000197323|Q9UPN9-2|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	MULTI-SECPEP	A375_MHC_IP_R2	2	647.625244140625	2	648.31696	1294.61937	-0.62904	-0.00040781	0.36219	0.00023481	-0.26685	-0.000173	648.3172986609026	95.978	0.66119	96.728	96.398	97.059	0.75045					17	12	2	0	0	0	0.9889	1	36524	36524		8.1555	2.4237	1	1431200			64149	9144	46791	47157	62506	62506					-0.016158255360551266
YSDRYGFYY	9	Unmodified	_YSDRYGFYY_					0	0	0		nc|ENSG00000188501|Q6UWM7-2|LCTL;ENSG00000188501|ENST00000695545|LCTL	nc|ENSG00000188501|Q6UWM7-2|LCTL	nc|ENSG00000188501|Q6UWM7-2|LCTL	MULTI-MSMS	A375_MHC_IP_R1	1	617.6644897460938	2	617.264196	1232.51384	-0.74243	-0.00045827	0.87377	0.00053935	0.13134	8.1072E-05	617.2647881739553	68.191	0.35515	68.191	68.006	68.361	0					9	6	2	0	0	0	0.22013	1	24744	24744		36.506	21.258	1	1441500			64150	8909	46792	47158	62507	62507					-0.09311741661645101
YSDSLVQKGY	10	Unmodified	_YSDSLVQKGY_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	A375_MHC_IP_R1	1	580.68505859375	2	580.285128	1158.5557	-0.45045	-0.00026139	0.49033	0.00028453	0.03988	2.3142E-05	580.2853957044616	39.819	0.50837	39.819	39.541	40.05	0					34	9	4	0	0	0	1.5116E-15	1	13608	13608		226.55	180.85	1	45930000			64151	3365	46793	47159	62508	62508					-0.017231859731282384
YSDSLVQKGY	10	Unmodified	_YSDSLVQKGY_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-SECPEP	A375_MHC_IP_R2	2	580.6851806640625	2	580.285128	1158.5557	-0.45869	-0.00026617	-0.080442	-4.6679E-05	-0.53913	-0.00031285	580.2850535849145	39.114	0.56143	39.888	39.658	40.219	0.77451					34	10	4	0	0	0	1.5423E-13	1	14394	14394		226.55	178.8	1	60665000			64152	3365	46793	47159	62509	62509					-0.017231859731282384
YSDSSNAPLY	10	Unmodified	_YSDSSNAPLY_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-MSMS	A375_MHC_IP_R1	1	559.145263671875	2	558.745836	1115.47712	-0.58189	-0.00032513	-0.018298	-1.0224E-05	-0.60019	-0.00033536	558.745698460826	52.566	0.71022	52.566	52.186	52.897	0					20	13	2	0	0	0	0.10503	1	18693	18693		62.573	30.456	1	2999700			64153	2650	46794	47160	62510	62510					-0.0760003827822402
YSDSSNAPLY	10	Unmodified	_YSDSSNAPLY_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-MSMS	A375_MHC_IP_R2	2	559.1453857421875	2	558.745836	1115.47712	-1.0134	-0.00056622	0.73794	0.00041232	-0.27544	-0.0001539	558.7461747090894	51.858	0.45901	52.611	52.423	52.882	0.75225					20	8	3	0	0	0	0.30287	1	19574	19574		39.95	18.203	1	2686400			64154	2650	46794	47160	62511	62511					-0.0760003827822402
YSDVAKGILQY	11	Unmodified	_YSDVAKGILQY_					0	0	0		nc|ENSG00000006282|Q8TB22-4|SPATA20;ENST00000503063.5_1_17:48625445-48628667:+|nuORF;nc|ENSG00000006282|Q8TB22-3|SPATA20;SPATA20|p.Q711Rfs*22|1|0.46|ENSG00000006282|chr17:50555252-50555252|T/-|frameshift_variant;nc|ENSG00000006282|Q8TB22|SPATA20;ENSG00000006282|ENST00000006658|SPATA20;ENST00000515619.1_1_17:48627622-48628299:+|nuORF;ENST00000505559.5_1_17:48627490-48628082:+|nuORF;ENST00000504265.5_1_17:48627490-48628667:+|nuORF;ENST00000504334.5_1_17:48627490-48633020:+|nuORF	nc|ENSG00000006282|Q8TB22-4|SPATA20	nc|ENSG00000006282|Q8TB22-4|SPATA20	MULTI-MSMS	A375_MHC_IP_R1	1	628.7680053710938	2	628.829703	1255.64485	-0.61515	-0.00038682	0.3304	0.00020777	-0.28475	-0.00017906	628.8303663137034	73.871	0.55751	73.871	73.488	74.045	0					19	10	3	0	0	0	0.4429	1	26863	26863		35.612	14.075	1	1921000			64155	910	46795	47161	62512	62512					0.027256489863930256
YSDVAKGILQY	11	Unmodified	_YSDVAKGILQY_					0	0	0		nc|ENSG00000006282|Q8TB22-4|SPATA20;ENST00000503063.5_1_17:48625445-48628667:+|nuORF;nc|ENSG00000006282|Q8TB22-3|SPATA20;SPATA20|p.Q711Rfs*22|1|0.46|ENSG00000006282|chr17:50555252-50555252|T/-|frameshift_variant;nc|ENSG00000006282|Q8TB22|SPATA20;ENSG00000006282|ENST00000006658|SPATA20;ENST00000515619.1_1_17:48627622-48628299:+|nuORF;ENST00000505559.5_1_17:48627490-48628082:+|nuORF;ENST00000504265.5_1_17:48627490-48628667:+|nuORF;ENST00000504334.5_1_17:48627490-48633020:+|nuORF	nc|ENSG00000006282|Q8TB22-4|SPATA20	nc|ENSG00000006282|Q8TB22-4|SPATA20	MULTI-SECPEP	A375_MHC_IP_R2	2	629.2294921875	2	628.829703	1255.64485	-0.80285	-0.00050485	0.57319	0.00036044	-0.22966	-0.00014442	629.3315835965171	73.101	0.35713	73.836	73.684	74.041	0.73541					10	6	2	0	0	0	0.36941	1	27772	27772		73.196	55.05	1	1564200			64156	910	46795	47161	62513	62513					0.027256489863930256
YSDVGRYIDHY	11	Unmodified	_YSDVGRYIDHY_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;ENST00000526952.1_2_11:33789164-33793404:-|nuORF;ENST00000530013.5_1_11:33775932-33796043:-|nuORF;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-MSMS	A375_MHC_IP_R1	1	463.9481201171875	3	463.214086	1386.62043	0.20401	9.4502E-05	-0.29468	-0.0001365	-0.090665	-4.1997E-05	463.21393893316366	48.729	0.55689	48.729	48.426	48.983	0					30	10	4	0	0	0	0.63523	1	17166	17166		12.929	6.6943	1	16503000			64157	14538	46796	47162	62514	62514					-0.05741611167127303
YSDVGRYIDHY	11	Unmodified	_YSDVGRYIDHY_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;ENST00000526952.1_2_11:33789164-33793404:-|nuORF;ENST00000530013.5_1_11:33775932-33796043:-|nuORF;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-MSMS	A375_MHC_IP_R1	1	694.7172241210938	2	694.317491	1386.62043	-0.17532	-0.00012173	-0.1213	-8.4222E-05	-0.29662	-0.00020595	694.8188074911	48.741	0.55689	48.741	48.426	48.983	0					23	10	3	0	0	0	0.00082022	1	17183	17183		106.37	89.252	1	7341900			64158	14538	46796	47162	62515	62515					-0.05741611167127303
YSDVGRYIDHY	11	Unmodified	_YSDVGRYIDHY_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;ENST00000526952.1_2_11:33789164-33793404:-|nuORF;ENST00000530013.5_1_11:33775932-33796043:-|nuORF;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-MSMS	A375_MHC_IP_R2	2	463.6137390136719	3	463.214086	1386.62043	-0.45809	-0.00021219	0.0069978	3.2415E-06	-0.45109	-0.00020895	463.2140717101268	48.095	0.75514	48.856	48.48	49.235	0.76128					38	14	4	0	0	0	0.30938	1	18018	18018		32.518	23.274	1	22169000			64159	14538	46796	47162	62516	62516					-0.05741611167127303
YSDVGRYIDHY	11	Unmodified	_YSDVGRYIDHY_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;ENST00000526952.1_2_11:33789164-33793404:-|nuORF;ENST00000530013.5_1_11:33775932-33796043:-|nuORF;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-SECPEP	A375_MHC_IP_R2	2	694.7171020507812	2	694.317491	1386.62043	-0.59048	-0.00040998	-0.12793	-8.8826E-05	-0.71841	-0.0004988	694.3173325597179	48.087	0.45225	48.849	48.582	49.034	0.76128					22	8	3	0	0	0	0.59433	1	18041	18041		48.073	40.971	1	6823100			64160	14538	46796	47162	62517	62517					-0.05741611167127303
YSDVHNCSY	9	Carbamidomethyl (C)	_YSDVHNC(Carbamidomethyl (C))SY_	YSDVHNC(1)SY		YSDVHNC(69)SY		0	1	0		ENST00000557983.1_1_15:80423514-80429967:+|nuORF;nc|ENSG00000086666|Q6FIF0-2|ZFAND6;ENSG00000086666|ENST00000261749|ZFAND6	ENST00000557983.1_1_15:80423514-80429967:+|nuORF	ENST00000557983.1_1_15:80423514-80429967:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	573.1221313476562	2	572.721838	1143.42912	0.14543	8.3294E-05	-0.1264	-7.2389E-05	0.019039	1.0904E-05	572.7217589300077	22.526	0.60876	22.526	22.164	22.773	0					18	11	2	0	0	0	0.037085	1	6060	6060		69.338	36.553	1	2333800			64161	1842	46797	47163	62518	62518	10				-0.13685435469938056
YSDVHNCSY	9	Carbamidomethyl (C)	_YSDVHNC(Carbamidomethyl (C))SY_	YSDVHNC(1)SY		YSDVHNC(63)SY		0	1	0		ENST00000557983.1_1_15:80423514-80429967:+|nuORF;nc|ENSG00000086666|Q6FIF0-2|ZFAND6;ENSG00000086666|ENST00000261749|ZFAND6	ENST00000557983.1_1_15:80423514-80429967:+|nuORF	ENST00000557983.1_1_15:80423514-80429967:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	573.1211547851562	2	572.721838	1143.42912	-0.57991	-0.00033213	-0.36369	-0.00020829	-0.94359	-0.00054042	572.7216254363649	20.219	0.71057	20.829	20.399	21.109	0.61029					23	13	2	0	0	0	0.052747	1	6221	6221		63.227	30.442	1	2831800			64162	1842	46797	47163	62519	62519	10				-0.13685435469938056
YSDVHNCSY	9	Unmodified	_YSDVHNCSY_					0	0	0		ENST00000557983.1_1_15:80423514-80429967:+|nuORF;nc|ENSG00000086666|Q6FIF0-2|ZFAND6;ENSG00000086666|ENST00000261749|ZFAND6	ENST00000557983.1_1_15:80423514-80429967:+|nuORF	ENST00000557983.1_1_15:80423514-80429967:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	544.6104125976562	2	544.211106	1086.40766	-0.73039	-0.00039749	-0.022213	-1.2089E-05	-0.75261	-0.00040958	544.2111499924328	25.724	0.71035	25.724	25.46	26.17	0					29	13	3	0	0	0	0.052747	2	7524	7470;7524		63.227	23.278	1	7366000			64163	1842	46797	47164	62520;62521	62521					-0.1320882049865304
YSDVHNCSY	9	Unmodified	_YSDVHNCSY_					0	0	0		ENST00000557983.1_1_15:80423514-80429967:+|nuORF;nc|ENSG00000086666|Q6FIF0-2|ZFAND6;ENSG00000086666|ENST00000261749|ZFAND6	ENST00000557983.1_1_15:80423514-80429967:+|nuORF	ENST00000557983.1_1_15:80423514-80429967:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	544.6102294921875	2	544.211106	1086.40766	-1.2444	-0.0006772	-0.23531	-0.00012806	-1.4797	-0.00080526	544.2111115603122	25.204	0.60987	25.848	25.619	26.229	0.64368					23	11	3	0	0	0	0.02331	1	8373	8373		80.676	36.904	1	8889800			64164	1842	46797	47164	62522	62522					-0.1320882049865304
YSDVMLENY	9	Oxidation (M)	_YSDVM(Oxidation (M))LENY_		YSDVM(1)LENY		YSDVM(42)LENY	0	0	1		ENSG00000130818|ENST00000253115|ZNF426;ZNF560|p.N133S|1|0.4|ENSG00000198028|chr19:9470442-9470442|T/C|missense_variant;ENSG00000198028|ENST00000301480|ZNF560	ENSG00000130818|ENST00000253115|ZNF426	ENSG00000130818|ENST00000253115|ZNF426	MULTI-MSMS	A375_MHC_IP_R1	1	575.6415405273438	2	575.242072	1148.46959	-0.27291	-0.00015699	-0.34307	-0.00019735	-0.61598	-0.00035434	575.2420332770558	64.961	0.50638	64.961	64.75	65.257	0					18	9	3	0	0	0	0.14922	1	23533	23533		41.84	21.386	1	1821600			64165	4285	46798	47165	62523	62523		222			-0.09870513870146169
YSDVMLENY	9	Oxidation (M)	_YSDVM(Oxidation (M))LENY_		YSDVM(1)LENY		YSDVM(50)LENY	0	0	1		ENSG00000130818|ENST00000253115|ZNF426;ZNF560|p.N133S|1|0.4|ENSG00000198028|chr19:9470442-9470442|T/C|missense_variant;ENSG00000198028|ENST00000301480|ZNF560	ENSG00000130818|ENST00000253115|ZNF426	ENSG00000130818|ENST00000253115|ZNF426	MULTI-SECPEP	A375_MHC_IP_R1	1	575.2191772460938	2	575.242072	1148.46959	-0.3401	-0.00019564	0.22936	0.00013194	-0.11074	-6.3702E-05	575.242222583628	65.827	0.56013	65.827	65.462	66.022	0					17	10	2	0	0	0	0.16676	1	23832	23832		49.933	29.479	1	1725500			64166	4285	46798	47165	62524	62524		222			-0.09870513870146169
YSDVNNLDGF	10	Unmodified	_YSDVNNLDGF_					0	0	0		tr|U7SLY5|U7SLY5_FUSNUCitratelyasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01987PE=3SV=1	tr|U7SLY5|U7SLY5_FUSNUCitratelyasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01987PE=3SV=1	tr|U7SLY5|U7SLY5_FUSNUCitratelyasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01987PE=3SV=1	MULTI-SECPEP	A375_MHC_IP_R2	2	572.6505126953125	2	572.251286	1142.48802	-0.30431	-0.00017414	-0.30336	-0.0001736	-0.60767	-0.00034774	572.2511365943762	65.003	1.0646	65.741	65.41	66.475	0.73811					40	20	3	0	0	0	0.74754	1	24601	24601		17.113	0	1	5615400			64167	29514	46799	47166	62525	62525					-0.07752635903943883
YSDVWSFGVV	10	Unmodified	_YSDVWSFGVV_					0	0	0		ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	MSMS	A375_MHC_IP_R2	2	579.6735229492188	2	579.776939	1157.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.648	1	78.391	77.891	78.891	0.74293								0	0	0	0.14741	1	29486	29486		22.736	5.6234	1				64168	5153	46800	47167	62526	62526					-0.03314267139239746
YSDWDNSCYS	10	Unmodified	_YSDWDNSCYS_					0	0	0			REV__ENSG00000143126|ENST00000271332|CELSR2	REV__ENSG00000143126|ENST00000271332|CELSR2	MULTI-SECPEP	A375_MHC_IP_R1	1	619.7171630859375	2	620.216585	1238.41862	-0.37279	-0.00023121	2.2159	0.0013743	1.8431	0.0011431	620.2178007108621	103.04	0.6613	103.04	102.81	103.47	0					18	12	2	0	0	0	0.87043	1	37884	37884		20.415	5.5763	1	1115100	+		64169	19335	46801	47168	62527	62527					-0.1910546291501305
YSDWNPDDTP	10	Unmodified	_YSDWNPDDTP_					0	0	0			REV__ENSG00000175664|ENST00000380473|TEX26	REV__ENSG00000175664|ENST00000380473|TEX26	MULTI-MSMS	A375_MHC_IP_R1	1	605.6781616210938	2	605.238375	1208.4622	-0.2494	-0.00015095	0.094763	5.7354E-05	-0.15464	-9.3592E-05	605.2383903757315	62.294	0.56265	62.294	61.994	62.557	0					16	10	2	0	0	0	0.71245	1	22401	22401		6.7232	6.7232	1	1297400	+		64170	21357	46802	47169	62528	62528					-0.1336953014624669
YSEDHIIGAY	10	Unmodified	_YSEDHIIGAY_					0	0	0		ENSG00000137965|ENST00000370747|IFI44;ENST00000467790.5_1_1:79115880-79120915:+|nuORF	ENSG00000137965|ENST00000370747|IFI44	ENSG00000137965|ENST00000370747|IFI44	MULTI-MSMS	A375_MHC_IP_R1	1	584.6698608398438	2	584.269478	1166.5244	-0.16191	-9.46E-05	0.065521	3.8282E-05	-0.09639	-5.6318E-05	584.2694553655913	56.016	0.76262	56.016	55.584	56.347	0					29	14	3	0	0	0	0.011417	1	20025	20025		120.45	82.476	1	7033800			64171	4940	46803	47170	62529	62529					-0.052197590072410094
YSEDHIIGAY	10	Unmodified	_YSEDHIIGAY_					0	0	0		ENSG00000137965|ENST00000370747|IFI44;ENST00000467790.5_1_1:79115880-79120915:+|nuORF	ENSG00000137965|ENST00000370747|IFI44	ENSG00000137965|ENST00000370747|IFI44	MULTI-MSMS	A375_MHC_IP_R2	2	584.6694946289062	2	584.269478	1166.5244	-0.56122	-0.00032791	0.26035	0.00015211	-0.30088	-0.00017579	584.2696508169698	55.275	0.55856	56.026	55.729	56.287	0.75075					24	10	4	0	0	0	0.0092734	1	20875	20875		108	66.157	1	6065900			64172	4940	46803	47170	62530	62530					-0.052197590072410094
YSEDLSDMHY	10	Unmodified	_YSEDLSDMHY_					0	0	0		nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF	nc|ENSG00000163913|Q9HBG6-7|IFT122	nc|ENSG00000163913|Q9HBG6-7|IFT122	MULTI-MSMS	A375_MHC_IP_R1	1	630.1697387695312	2	630.247886	1258.48122	-0.61192	-0.00038566	0.0080555	5.0769E-06	-0.60386	-0.00038058	630.2478676228731	57.512	0.50831	57.512	57.263	57.771	0					22	9	3	0	0	0	0.011479	1	20604	20604		118.89	75.036	1	7350800			64173	6743	46804	47171	62531	62531					-0.13768316846812922
YSEDLSDMHY	10	Unmodified	_YSEDLSDMHY_					0	0	0		nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF	nc|ENSG00000163913|Q9HBG6-7|IFT122	nc|ENSG00000163913|Q9HBG6-7|IFT122	MULTI-MSMS	A375_MHC_IP_R2	2	630.6478881835938	2	630.247886	1258.48122	-1.2355	-0.00077866	0.1005	6.3342E-05	-1.135	-0.00071532	630.2480139700443	56.959	0.66263	57.709	57.408	58.071	0.75015					30	12	3	0	0	0	0.00022086	1	21512	21512		152.41	104.66	1	8657100			64174	6743	46804	47171	62532	62532					-0.13768316846812922
YSEDLSDMHY	10	Oxidation (M)	_YSEDLSDM(Oxidation (M))HY_		YSEDLSDM(1)HY		YSEDLSDM(120)HY	0	0	1		nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF	nc|ENSG00000163913|Q9HBG6-7|IFT122	nc|ENSG00000163913|Q9HBG6-7|IFT122	MULTI-MSMS	A375_MHC_IP_R2	2	638.6447143554688	2	638.245343	1274.47613	-1.0035	-0.00064046	0.20691	0.00013206	-0.79656	-0.0005084	638.2454444419308	37.677	0.51219	38.452	38.175	38.687	0.77451					23	9	3	0	0	0	0.011296	1	13793	13793		123.45	123.45	1	7947300			64175	6743	46804	47172	62533	62533		357			-0.1501262070944449
YSEDLSDMHY	10	Oxidation (M)	_YSEDLSDM(Oxidation (M))HY_					0	0	1		nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF	nc|ENSG00000163913|Q9HBG6-7|IFT122	nc|ENSG00000163913|Q9HBG6-7|IFT122	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	638.245343	1274.47613	-1.0579	-0.00067522	0.73728	0.00047056	-0.32066	-0.00020466	638.2457957508918	38.226	0.5107	38.226	38.016	38.526	0	-0.11309	0.00019755	NaN	123.45	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6256900			64176	6743	46804	47172				357			-0.1501262070944449
YSEDRIGLADY	11	Unmodified	_YSEDRIGLADY_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	A375_MHC_IP_R1	1	651.7039184570312	2	651.304049	1300.59355	-0.25398	-0.00016542	-0.028753	-1.8727E-05	-0.28273	-0.00018414	651.3038477082337	62.601	0.56292	62.601	62.3	62.863	0					19	10	3	0	0	0	0.076582	1	22616	22616		74.306	42.269	1	2809200			64177	2144	46805	47173	62534	62534					-0.04472719778323153
YSEDRIGLADY	11	Unmodified	_YSEDRIGLADY_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	A375_MHC_IP_R2	2	651.7031860351562	2	651.304049	1300.59355	-1.0071	-0.00065591	-0.43087	-0.00028063	-1.4379	-0.00093653	651.3037486484104	61.93	0.4543	62.672	62.471	62.925	0.74263					23	8	4	0	0	0	0.076582	1	23486	23486		74.306	51.648	1	4129400			64178	2144	46805	47173	62535	62535					-0.04472719778323153
YSEEECRQY	9	Unmodified	_YSEEECRQY_					0	0	0		nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2	nc|ENSG00000114353|P04899-6|GNAI2	nc|ENSG00000114353|P04899-6|GNAI2	MULTI-MSMS	A375_MHC_IP_R1	1	604.1396484375	2	603.740228	1205.4659	-0.38692	-0.0002336	-0.4961	-0.00029952	-0.88302	-0.00053312	603.7401261777087	25.382	0.51066	25.382	25.255	25.765	0					16	9	3	0	0	0	0.0085749	1	7430	7430		171.09	95.325	1	4989200			64179	3213	46806	47174	62536	62536					-0.1286118364403137
YSEEECRQY	9	Unmodified	_YSEEECRQY_					0	0	0		nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2	nc|ENSG00000114353|P04899-6|GNAI2	nc|ENSG00000114353|P04899-6|GNAI2	MULTI-MSMS	A375_MHC_IP_R2	2	604.1392822265625	2	603.740228	1205.4659	-0.87165	-0.00052625	-0.30892	-0.0001865	-1.1806	-0.00071276	603.7400817404032	24.911	0.40746	25.555	25.414	25.822	0.64368					15	7	3	0	0	0	0.0018976	2	8288	8220;8288		145.13	78.673	1	5657000			64180	3213	46806	47174	62537;62538	62538					-0.1286118364403137
YSEEGVYNVQY	11	Unmodified	_YSEEGVYNVQY_					0	0	0		nc|ENSG00000144827|Q9NUJ1-2|ABHD10;ENSG00000144827|ENST00000273359|ABHD10	nc|ENSG00000144827|Q9NUJ1-2|ABHD10	nc|ENSG00000144827|Q9NUJ1-2|ABHD10	MULTI-SECPEP	A375_MHC_IP_R1	1	676.1952514648438	2	675.796057	1349.57756	-0.477	-0.00032235	-0.85298	-0.00057644	-1.33	-0.00089879	675.7952624534068	70.382	0.51189	70.382	70.085	70.597	0					13	9	2	0	0	0	0.65968	1	25577	25577		34.932	22.691	1	2042000			64181	5519	46807	47175	62539	62539					-0.08324426015224162
YSEEGVYNVQY	11	Unmodified	_YSEEGVYNVQY_					0	0	0		nc|ENSG00000144827|Q9NUJ1-2|ABHD10;ENSG00000144827|ENST00000273359|ABHD10	nc|ENSG00000144827|Q9NUJ1-2|ABHD10	nc|ENSG00000144827|Q9NUJ1-2|ABHD10	MULTI-SECPEP	A375_MHC_IP_R2	2	676.5143432617188	2	675.796057	1349.57756	-0.61625	-0.00041646	0.45948	0.00031051	-0.15677	-0.00010594	675.7964135025721	69.882	0.40669	70.616	70.386	70.793	0.73421					11	7	2	0	0	0	0.03754	1	26494	26494		83.429	75.273	1	1718200			64182	5519	46807	47175	62540	62540					-0.08324426015224162
YSEEIVEMY	9	Oxidation (M)	_YSEEIVEM(Oxidation (M))Y_		YSEEIVEM(1)Y		YSEEIVEM(71)Y	0	0	1		ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	A375_MHC_IP_R1	1	590.14990234375	2	589.74973	1177.48491	-0.70026	-0.00041298	-0.017942	-1.0581E-05	-0.7182	-0.00042356	589.749643353716	67.879	0.60719	67.879	67.552	68.159	0					20	11	2	0	0	0	0.034481	1	24577	24577		71.134	54.191	1	2168200			64183	2162	46808	47176	62541	62541		83			-0.09673647072963831
YSEEIVEMY	9	Oxidation (M)	_YSEEIVEM(Oxidation (M))Y_		YSEEIVEM(1)Y		YSEEIVEM(82)Y	0	0	1		ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	A375_MHC_IP_R2	2	590.1492919921875	2	589.74973	1177.48491	-0.57612	-0.00033977	-0.18189	-0.00010727	-0.75801	-0.00044704	589.7495905962119	67.249	0.65996	67.986	67.75	68.41	0.73631					20	12	2	0	0	0	0.022213	1	25490	25490		81.613	64.671	1	1845100			64184	2162	46808	47176	62542	62542		83			-0.09673647072963831
YSEELKFRPL	10	Unmodified	_YSEELKFRPL_					0	0	0			REV__nc|ENSG00000021355|P30740-2|SERPINB1	REV__nc|ENSG00000021355|P30740-2|SERPINB1	MULTI-SECPEP	A375_MHC_IP_R2	2	428.6487121582031	3	427.899439	1280.67649	-0.34501	-0.00014763	0.14944	6.3946E-05	-0.19557	-8.3683E-05	427.8992135971154	51.239	0.50732	51.992	51.763	52.27	0.75225					13	9	2	0	0	0	0.94651	1	19309	19309		1.7423	1.7423	1	1529400	+		64185	16266	46809	47177	62543	62543					0.04737641740325671
YSEEMKKIQE	10	Unmodified	_YSEEMKKIQE_					0	0	0		ENSG00000185129|ENST00000331327|PURA	ENSG00000185129|ENST00000331327|PURA	ENSG00000185129|ENST00000331327|PURA	MULTI-SECPEP	A375_MHC_IP_R2	2	642.7212524414062	2	642.810653	1283.60675	-0.8241	-0.00052974	-0.021293	-1.3687E-05	-0.84539	-0.00054343	642.8095801671669	55.259	0.66317	56.009	55.523	56.187	0.75075					30	12	4	0	0	0	0.9269	1	20845	20845		6.7232	0.99131	1	5239300			64186	8643	46810	47178	62544	62544					-0.02370604990596803
YSEESHLCPCD	11	Unmodified	_YSEESHLCPCD_					0	0	0			REV__ENST00000485984.1_1_1:3394688-3397148:+|nuORF	REV__ENST00000485984.1_1_1:3394688-3397148:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	642.1388549804688	2	641.73937	1281.46419	-0.71164	-0.00045669	0.025002	1.6044E-05	-0.68664	-0.00044064	641.7394316889865	27.709	0.30291	27.709	27.584	27.887	0					12	5	3	0	0	0	0.14327	1	8506	8506		62.573	29.787	1	2746000	+		64187	25316	46811	47179	62545	62545					-0.16528560724259478
YSEESHLCPCD	11	Unmodified	_YSEESHLCPCD_					0	0	0			REV__ENST00000485984.1_1_1:3394688-3397148:+|nuORF	REV__ENST00000485984.1_1_1:3394688-3397148:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	641.73937	1281.46419	-0.71164	-0.00045669	0.025002	1.6044E-05	-0.68664	-0.00044064	641.7394316889865	27.709	0.30291	27.709	27.584	27.887	0	-0.088871	-0.00041834	NaN	62.573	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2746000	+		64188	25316	46811	47179							-0.16528560724259478
YSEESHLCPCD	11	Unmodified	_YSEESHLCPCD_					0	0	0			REV__ENST00000485984.1_1_1:3394688-3397148:+|nuORF	REV__ENST00000485984.1_1_1:3394688-3397148:+|nuORF	MULTI-MATCH	A375_MHC_IP_R2	2		2	641.73937	1281.46419	-0.71082	-0.00045616	0.62382	0.00040033	-0.087002	-5.5832E-05	641.7395856542961	27.208	0.30582	27.887	27.741	28.047	0.67857	0.088871	0.00035023	NaN	62.573	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2926400	+		64189	25316	46811	47179							-0.16528560724259478
YSEETLRARFY	11	Unmodified	_YSEETLRARFY_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	A375_MHC_IP_R1	1	479.3050537109375	3	478.905253	1433.69393	-0.45238	-0.00021665	0.34838	0.00016684	-0.104	-4.9808E-05	478.9052591250566	52.32	0.55788	52.32	52.136	52.694	0					17	10	3	0	0	0	0.38403	1	18611	18611		32.616	9.6008	1	4771700			64190	4389	46812	47180	62546	62546					-0.005570627246925142
YSEETLRARFY	11	Unmodified	_YSEETLRARFY_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	A375_MHC_IP_R2	2	479.4637756347656	3	478.905253	1433.69393	-0.80875	-0.00038731	-0.40777	-0.00019528	-1.2165	-0.0005826	478.9050996648817	51.725	0.40646	52.477	52.219	52.626	0.75225					18	7	3	0	0	0	0.72494	1	19416	19416		14.838	6.5515	1	3531200			64191	4389	46812	47180	62547	62547					-0.005570627246925142
YSEFVRRSVEY	11	Unmodified	_YSEFVRRSVEY_					0	0	0		ENSG00000184254|ENST00000329841|ALDH1A3	ENSG00000184254|ENST00000329841|ALDH1A3	ENSG00000184254|ENST00000329841|ALDH1A3	MULTI-MSMS	A375_MHC_IP_R2	2	479.3047790527344	3	478.905253	1433.69393	-0.80875	-0.00038731	-0.40777	-0.00019528	-1.2165	-0.0005826	478.9050996648817	51.725	0.40646	52.477	52.219	52.626	0.75225					18	7	3	0	0	0	0.45155	1	19490	19490		23.016	0	1	3531200			64192	8565	46813	47181	62548	62548					-0.005570627246925142
YSEGDELEEL	10	Unmodified	_YSEGDELEEL_					0	0	0			REV__ENSG00000104237|ENST00000220676|RP1	REV__ENSG00000104237|ENST00000220676|RP1	MULTI-MSMS	A375_MHC_IP_R1	1	593.7129516601562	2	592.253691	1182.49283	-0.10522	-6.2317E-05	-1.2288	-0.00072777	-1.334	-0.00079008	592.2530252288137	107.62	1.2225	107.62	107.29	108.51	0					57	23	4	0	0	0	0.70329	1	39510	39510		10.824	2.6684	1	21118000	+		64193	17310	46814	47182	62549	62549					-0.0911179655183787
YSEGESLFY	9	Unmodified	_YSEGESLFY_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;ENSG00000006715|ENST00000310301|VPS41;nc|ENSG00000006715|P49754-3|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-MSMS	A375_MHC_IP_R1	1	1094.8671875	1	1094.46768	1093.46041	-0.024622	-2.6948E-05	0.12756	0.00013961	0.10294	0.00011266	1094.4677129931997	91.404	0.65816	91.404	90.997	91.655	0					30	12	3	0	0	0	0.012712	1	33496	33496		92.822	50.728	1	7909200			64194	927	46815	47183	62550	62550					-0.0825853916419419
YSEGESLFY	9	Unmodified	_YSEGESLFY_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;ENSG00000006715|ENST00000310301|VPS41;nc|ENSG00000006715|P49754-3|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-MATCH	A375_MHC_IP_R2	2		1	1094.46768	1093.46041	0.20013	0.00021903	-0.49977	-0.00054698	-0.29964	-0.00032795	1094.4669082476742	90.659	0.75928	91.393	91.058	91.818	0.73451	-0.0051161	-0.0004624	NaN	92.822	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8211400			64195	927	46815	47183							-0.0825853916419419
YSEGGPLHKN	10	Unmodified	_YSEGGPLHKN_					0	0	0		RGPD3|p.Y764H|1|0.34|ENSG00000153165|chr2:106433201-106433201|A/G|missense_variant	RGPD3|p.Y764H|1|0.34|ENSG00000153165|chr2:106433201-106433201|A/G|missense_variant	RGPD3|p.Y764H|1|0.34|ENSG00000153165|chr2:106433201-106433201|A/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	551.6275024414062	2	551.269813	1100.52507	-0.78823	-0.00043453	4.3118	0.002377	3.5236	0.0019425	551.2732783515761	30.904	0.4053	30.904	30.653	31.059	0					14	7	3	0	0	0	0.78945	1	9794	9794		25.399	10.561	1	2350800			64196	29070	46816	47184	62551	62551					-0.021169195675156516
YSEGYPGQRY	10	Unmodified	_YSEGYPGQRY_					0	0	0		nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;ENST00000579558.5_1_17:18243959-18259295:-|nuORF;nc|ENSG00000176974|P34896-3|SHMT1;ENST00000419974.2_1_1:44317163-44317268:-|nuORF;ENST00000395682.3_1_17:18256945-18259295:-|nuORF	nc|ENSG00000176974|P34896-2|SHMT1	nc|ENSG00000176974|P34896-2|SHMT1	MULTI-MSMS	A375_MHC_IP_R1	1	610.6717529296875	2	610.272552	1218.53055	-0.67512	-0.00041201	-0.11697	-7.1386E-05	-0.79209	-0.00048339	610.2724516125186	29.996	0.75459	29.996	29.748	30.503	0					44	14	4	0	0	0	0.00015566	1	9441	9441		152.89	74.158	1	87577000			64197	8047	46817	47185	62552	62552					-0.06997240775717728
YSEGYPGQRY	10	Unmodified	_YSEGYPGQRY_					0	0	0		nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;ENST00000579558.5_1_17:18243959-18259295:-|nuORF;nc|ENSG00000176974|P34896-3|SHMT1;ENST00000419974.2_1_1:44317163-44317268:-|nuORF;ENST00000395682.3_1_17:18256945-18259295:-|nuORF	nc|ENSG00000176974|P34896-2|SHMT1	nc|ENSG00000176974|P34896-2|SHMT1	MULTI-MSMS	A375_MHC_IP_R2	2	610.6720581054688	2	610.272552	1218.53055	-1.19	-0.00072625	0.45365	0.00027685	-0.73638	-0.00044939	610.2728069569679	29.461	0.75786	30.159	29.93	30.688	0.69872					46	14	5	0	0	0	3.2822E-05	1	10246	10246		173.69	94.958	1	77798000			64198	8047	46817	47185	62553	62553					-0.06997240775717728
YSEIKDFLSY	10	Unmodified	_YSEIKDFLSY_					0	0	0		nc|ENSG00000152457|Q96SD1-4|DCLRE1C;ENST00000492201.5_1_10:14962436-14970058:-|nuORF;nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C;ENSG00000152457|ENST00000378278|DCLRE1C	nc|ENSG00000152457|Q96SD1-4|DCLRE1C;nc|ENSG00000152457|Q96SD1-2|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	MULTI-MSMS	A375_MHC_IP_R1	1	633.2076416015625	2	632.808436	1263.60232	-0.79491	-0.00050302	-0.70074	-0.00044343	-1.4956	-0.00094646	632.8078666879942	94.46	0.5108	94.46	94.241	94.752	0					15	9	2	0	0	0	0.042457	2	34752	34696;34752		78.06	34.079	1	2547300			64199	14685;5966	46818	47186	62554;62555	62555					-0.018937461418545354
YSEIKDFLSY	10	Unmodified	_YSEIKDFLSY_					0	0	0		nc|ENSG00000152457|Q96SD1-4|DCLRE1C;ENST00000492201.5_1_10:14962436-14970058:-|nuORF;nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C;ENSG00000152457|ENST00000378278|DCLRE1C	nc|ENSG00000152457|Q96SD1-4|DCLRE1C;nc|ENSG00000152457|Q96SD1-2|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	MULTI-MSMS	A375_MHC_IP_R2	2	633.2072143554688	2	632.808436	1263.60232	-0.63934	-0.00040458	-0.53734	-0.00034003	-1.1767	-0.00074461	632.8078182103436	93.796	0.50616	94.541	94.312	94.818	0.74474					17	9	2	0	0	0	0.042457	1	35674	35674		78.06	30.312	1	2170500			64200	14685;5966	46818	47186	62556	62556					-0.018937461418545354
YSEKVTLRYEE	11	Unmodified	_YSEKVTLRYEE_					0	0	0			REV__ENSG00000164309|ENST00000446378|CMYA5	REV__ENSG00000164309|ENST00000446378|CMYA5	MULTI-MSMS	A375_MHC_IP_R1	1	709.2547607421875	2	708.853906	1415.69326	-0.48988	-0.00034725	-0.71755	-0.00050864	-1.2074	-0.00085589	708.8538326102073	72.685	0.86147	72.685	72.22	73.082	0					30	16	3	0	0	0	0.59391	1	26467	26467		23.79	8.5413	1	4038500	+		64201	20481	46819	47187	62557	62557					0.0020409783564900863
YSELGHPFGY	10	Unmodified	_YSELGHPFGY_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6;ENST00000504674.1_1_5:39719945-39720791:-|nuORF	nc|ENSG00000102786|Q9UL03-3|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	MULTI-MSMS	A375_MHC_IP_R1	1	585.6669921875	2	585.266739	1168.51892	0.11691	6.8424E-05	-0.19814	-0.00011597	-0.08123	-4.7541E-05	585.2665145770934	69.896	0.35252	69.896	69.681	70.034	0					16	6	3	0	0	0	0.0059856	2	25361	25323;25361		133.7	87.681	1	4739800			64202	2393	46820	47188	62558;62559	62559					-0.05859437799040279
YSELGHPFGY	10	Unmodified	_YSELGHPFGY_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6;ENST00000504674.1_1_5:39719945-39720791:-|nuORF	nc|ENSG00000102786|Q9UL03-3|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	MULTI-MSMS	A375_MHC_IP_R2	2	585.6655883789062	2	585.266739	1168.51892	-0.40082	-0.00023458	-0.17281	-0.00010114	-0.57362	-0.00033572	585.2663752571149	69.305	0.50658	70.039	69.727	70.233	0.73421					21	9	3	0	0	0	0.0045843	1	26227	26227		96.285	50.264	1	4259700			64203	2393	46820	47188	62560	62560					-0.05859437799040279
YSELTTLTSQY	11	Unmodified	_YSELTTLTSQY_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	A375_MHC_IP_R1	1	652.9956665039062	2	653.314083	1304.61361	-0.36803	-0.00024044	0.44802	0.0002927	0.079991	5.2259E-05	653.3137075698743	89.391	0.50797	89.391	89.069	89.577	0					16	9	3	0	0	0	0.57164	1	32792	32792		61.602	53.993	1	2669500			64204	14788	46821	47189	62561	62561					-0.02650968838361223
YSELTTLTSQY	11	Unmodified	_YSELTTLTSQY_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R2	2	653.7130126953125	2	653.314083	1304.61361	-0.73299	-0.00047887	-0.052531	-3.4319E-05	-0.78552	-0.00051319	653.3138926980029	88.706	0.70889	89.438	89.077	89.786	0.7318					20	13	2	0	0	0	0.0010266	1	33751	33751		103.82	84.462	1	2746500			64205	14788	46821	47189	62562	62562					-0.02650968838361223
YSENIIEMY	9	Oxidation (M)	_YSENIIEM(Oxidation (M))Y_		YSENIIEM(1)Y		YSENIIEM(79)Y	0	0	1		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MULTI-MSMS	A375_MHC_IP_R1	1	589.6572265625	2	589.257722	1176.50089	-0.18293	-0.00010779	0.58284	0.00034344	0.39991	0.00023565	589.2580550255849	79.147	0.81786	79.147	78.756	79.574	0					26	15	2	0	0	0	0.02559	1	28939	28939		78.728	42.601	1	1230500			64206	4474	46822	47190	62563	62563		233			-0.08029940836058813
YSENKHNDY	9	Unmodified	_YSENKHNDY_					0	0	0			REV__DKC1|p.D278N|1|0.3|ENSG00000130826|chrX:154769227-154769227|G/A|missense_variant	REV__DKC1|p.D278N|1|0.3|ENSG00000130826|chrX:154769227-154769227|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	585.6463012695312	2	585.246535	1168.47852	-0.4191	-0.00024528	0.090218	5.28E-05	-0.32888	-0.00019248	585.2465923095573	42.796	0.45622	43.569	43.369	43.826	0.7724					15	8	2	0	0	0	0.64808	1	15925	15925		11.64	1.5664	1	3748300	+		64207	15994	46823	47191	62564	62564					-0.09898404189470966
YSENKHNDY	9	Unmodified	_YSENKHNDY_					0	0	0			REV__DKC1|p.D278N|1|0.3|ENSG00000130826|chrX:154769227-154769227|G/A|missense_variant	REV__DKC1|p.D278N|1|0.3|ENSG00000130826|chrX:154769227-154769227|G/A|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	585.246535	1168.47852	-0.16482	-9.6463E-05	-0.46652	-0.00027303	-0.63135	-0.00036949	585.2463152064297	43.477	0.50744	43.477	43.3	43.808	0	-0.046139	-0.00011124	NaN	11.64	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4208600	+		64208	15994	46823	47191							-0.09898404189470966
YSENVERTKY	10	Unmodified	_YSENVERTKY_					0	0	0		nc|ENSG00000170921|Q9HCD6-4|TANC2;nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;nc|ENSG00000170921|Q9HCD6-3|TANC2	nc|ENSG00000170921|Q9HCD6-4|TANC2	nc|ENSG00000170921|Q9HCD6-4|TANC2	MULTI-MSMS	A375_MHC_IP_R1	1	645.211181640625	2	644.812042	1287.60953	-0.41745	-0.00026918	-0.15839	-0.00010213	-0.57584	-0.00037131	644.8113063916634	20.104	0.30325	20.104	19.928	20.232	0					9	5	2	0	0	0	0.021084	1	5145	5145		84.738	48.232	1	1656400			64209	7560	46824	47192	62565	62565					-0.022770135414248216
YSENVERTKY	10	Unmodified	_YSENVERTKY_					0	0	0		nc|ENSG00000170921|Q9HCD6-4|TANC2;nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;nc|ENSG00000170921|Q9HCD6-3|TANC2	nc|ENSG00000170921|Q9HCD6-4|TANC2	nc|ENSG00000170921|Q9HCD6-4|TANC2	MULTI-SECPEP	A375_MHC_IP_R1	1	430.6100769042969	3	430.210453	1287.60953	-0.10973	-4.7207E-05	-0.32586	-0.00014019	-0.43559	-0.0001874	430.2101356227963	20.16	0.50616	20.16	19.928	20.435	0					22	9	3	0	0	0	0.40545	1	5120	5120		42.068	30.55	1	5845300			64210	7560	46824	47192	62566	62566					-0.022770135414248216
YSEQEYQLY	9	Unmodified	_YSEQEYQLY_					0	0	0		ENSG00000178028|ENST00000372289|DMAP1	ENSG00000178028|ENST00000372289|DMAP1	ENSG00000178028|ENST00000372289|DMAP1	MULTI-MSMS	A375_MHC_IP_R1	1	612.6677856445312	2	611.766768	1221.51898	-0.24199	-0.00014804	0.0033235	2.0332E-06	-0.23866	-0.00014601	611.7667776997431	70.99	0.66527	70.99	70.545	71.211	0					32	12	4	0	0	0	0.32092	1	25760	25760		29.082	16.039	1	3076100			64211	8124	46825	47193	62567	62567					-0.08291482589697807
YSEQEYQLY	9	Unmodified	_YSEQEYQLY_					0	0	0		ENSG00000178028|ENST00000372289|DMAP1	ENSG00000178028|ENST00000372289|DMAP1	ENSG00000178028|ENST00000372289|DMAP1	MULTI-SECPEP	A375_MHC_IP_R2	2	612.1660766601562	2	611.766768	1221.51898	-0.47423	-0.00029012	-0.17138	-0.00010485	-0.64561	-0.00039497	611.7666146549818	70.44	0.50757	71.174	70.895	71.402	0.73421					21	9	3	0	0	0	0.16237	1	26680	26680		78.728	38.771	1	4697600			64212	8124	46825	47193	62568	62568					-0.08291482589697807
YSESNKAIY	9	Unmodified	_YSESNKAIY_					0	0	0		nc|ENSG00000140471|Q8NG48-3|LINS1;ENST00000559149.5_1_15:101113500-101121059:-|nuORF;nc|ENSG00000140471|Q8NG48-2|LINS1;ENSG00000140471|ENST00000314742|LINS1	nc|ENSG00000140471|Q8NG48-3|LINS1	nc|ENSG00000140471|Q8NG48-3|LINS1	MULTI-SECPEP	A375_MHC_IP_R1	1	538.15869140625	2	537.758746	1073.50294	-0.76287	-0.00041024	0.14776	7.946E-05	-0.61511	-0.00033078	537.7587073101097	27.313	0.60631	27.313	27.078	27.684	0					27	11	4	0	0	0	0.013591	1	8253	8253		118.07	61.891	1	19507000			64213	5158	46826	47194	62569	62569					-0.03087144035930578
YSESNKAIY	9	Unmodified	_YSESNKAIY_					0	0	0		nc|ENSG00000140471|Q8NG48-3|LINS1;ENST00000559149.5_1_15:101113500-101121059:-|nuORF;nc|ENSG00000140471|Q8NG48-2|LINS1;ENSG00000140471|ENST00000314742|LINS1	nc|ENSG00000140471|Q8NG48-3|LINS1	nc|ENSG00000140471|Q8NG48-3|LINS1	MULTI-SECPEP	A375_MHC_IP_R2	2	538.158203125	2	537.758746	1073.50294	-1.1632	-0.0006255	0.79102	0.00042538	-0.37213	-0.00020012	537.7587717097441	26.73	0.61344	27.39	27.109	27.722	0.65992					37	11	6	0	0	0	0.011357	1	9056	9056		125.53	69.352	1	20514000			64214	5158	46826	47194	62570	62570					-0.03087144035930578
YSEVQPQGHY	10	Unmodified	_YSEVQPQGHY_					0	0	0			REV__ENSG00000136378|ENST00000388820|ADAMTS7	REV__ENSG00000136378|ENST00000388820|ADAMTS7	MSMS	A375_MHC_IP_R1	1	604.2042846679688	2	604.272552	1206.53055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.627	1	25.627	25.127	26.127	0								0	0	0	0.15105	1	7510	7510		15.847	5.0233	1		+		64215	18932	46827	47195	62571	62571					-0.0644524077567894
YSEVYPGQQY	10	Unmodified	_YSEVYPGQQY_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	A375_MHC_IP_R1	1	617.1859130859375	2	617.274761	1232.53497	-0.30317	-0.00018714	-0.092642	-5.7186E-05	-0.39582	-0.00024433	617.2747017713934	57.176	0.81383	57.176	56.855	57.669	0					46	15	5	0	0	0	0.01165	1	20442	20442		114.65	93.112	1	8657000			64216	3788	46828	47196	62572	62572					-0.07199776352786103
YSEVYPGQQY	10	Unmodified	_YSEVYPGQQY_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	A375_MHC_IP_R2	2	617.6743774414062	2	617.274761	1232.53497	-1.0684	-0.0006595	0.14895	9.1942E-05	-0.91945	-0.00056755	617.2747740524103	56.654	0.66217	57.404	57	57.662	0.75015					41	12	4	0	0	0	0.011043	1	21377	21377		110.67	93.562	1	8159600			64217	3788	46828	47196	62573	62573					-0.07199776352786103
YSEYPPFSHRY	11	Unmodified	_YSEYPPFSHRY_					0	0	0		ENSG00000133872|ENST00000256255|SARAF;nc|ENSG00000133872|Q96BY9-2|SARAF	ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	MULTI-MSMS	A375_MHC_IP_R1	1	723.7280883789062	2	723.327859	1444.64116	-0.079577	-5.756E-05	-0.17045	-0.00012329	-0.25002	-0.00018085	723.3276839157369	44.713	0.55865	44.713	44.37	44.928	0					25	10	3	0	0	0	0.0010212	1	15597	15597		132.22	105.95	1	3948400			64218	4535	46829	47197	62574	62574					-0.06337020787486836
YSEYPPFSHRY	11	Unmodified	_YSEYPPFSHRY_					0	0	0		ENSG00000133872|ENST00000256255|SARAF;nc|ENSG00000133872|Q96BY9-2|SARAF	ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	MULTI-SECPEP	A375_MHC_IP_R1	1	482.6665344238281	3	482.554331	1444.64116	0.13597	6.5613E-05	-0.28234	-0.00013625	-0.14638	-7.0634E-05	482.5541794563639	44.675	0.91611	44.675	44.267	45.183	0					58	17	6	0	0	0	0.031834	1	15579	15579		117.8	108.56	1	25551000			64219	4535	46829	47197	62575	62575					-0.06337020787486836
YSEYPPFSHRY	11	Unmodified	_YSEYPPFSHRY_					0	0	0		ENSG00000133872|ENST00000256255|SARAF;nc|ENSG00000133872|Q96BY9-2|SARAF	ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	MULTI-MSMS	A375_MHC_IP_R2	2	482.9538879394531	3	482.554331	1444.64116	-0.38997	-0.00018818	-0.22872	-0.00011037	-0.61869	-0.00029855	482.55419171018826	43.941	0.85918	44.711	44.329	45.188	0.76909					58	16	5	0	0	0	0.0010212	1	16342	16342		103.89	88.352	1	32928000			64220	4535	46829	47197	62576	62576					-0.06337020787486836
YSEYPPFSHRY	11	Unmodified	_YSEYPPFSHRY_					0	0	0		ENSG00000133872|ENST00000256255|SARAF;nc|ENSG00000133872|Q96BY9-2|SARAF	ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	MULTI-MSMS	A375_MHC_IP_R2	2	724.2290649414062	2	723.327859	1444.64116	-0.58584	-0.00042376	0.12942	9.3612E-05	-0.45643	-0.00033015	723.3279543717549	43.927	0.65562	44.696	44.38	45.035	0.76909					27	12	3	0	0	0	0.18322	1	16394	16394		67.081	54.038	1	4374400			64221	4535	46829	47197	62577	62577					-0.06337020787486836
YSFAYDKVEDY	11	Unmodified	_YSFAYDKVEDY_					0	0	0			REV__PI15|p.P152S|2|0.31|ENSG00000137558|chr8:74845189-74845189|C/T|missense_variant	REV__PI15|p.P152S|2|0.31|ENSG00000137558|chr8:74845189-74845189|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	467.606689453125	3	467.206597	1398.59796	-0.39344	-0.00018382	0.46798	0.00021864	0.074532	3.4822E-05	467.2068038479994	27.356	1.0091	27.356	26.978	27.987	0					32	19	2	0	0	0	0.73078	1	8322	8322		4.1166	0	1	3228900	+		64222	27776	46830	47198	62578	62578					-0.08539255355412934
YSFFNGKW	8	Unmodified	_YSFFNGKW_					0	0	0		nc|ENSG00000153930|Q8N957-2|ANKFN1;ENSG00000153930|ENST00000682825|ANKFN1	nc|ENSG00000153930|Q8N957-2|ANKFN1	nc|ENSG00000153930|Q8N957-2|ANKFN1	MULTI-MSMS	A375_MHC_IP_R1	1	524.7921142578125	2	524.747985	1047.48142	-0.33897	-0.00017787	-0.20581	-0.000108	-0.54477	-0.00028587	524.7478361678842	72.125	3.144	72.125	70.648	73.792	0					87	61	2	0	0	0	0.77515	1	26448	26448		12.532	0.89125	1	2019800			64223	6049	46831	47199	62579	62579					-0.04042484274009439
YSFFNGKW	8	Unmodified	_YSFFNGKW_					0	0	0		nc|ENSG00000153930|Q8N957-2|ANKFN1;ENSG00000153930|ENST00000682825|ANKFN1	nc|ENSG00000153930|Q8N957-2|ANKFN1	nc|ENSG00000153930|Q8N957-2|ANKFN1	MULTI-MSMS	A375_MHC_IP_R2	2	524.695068359375	2	524.747985	1047.48142	-0.72819	-0.00038211	-0.33865	-0.00017771	-1.0668	-0.00055982	524.7478159182054	71.148	2.2269	71.882	71.302	73.529	0.73421					66	43	2	0	0	0	0.77515	1	27121	27121		12.532	0.89125	1	1842500			64224	6049	46831	47199	62580	62580					-0.04042484274009439
YSFGLEGSWQA	11	Unmodified	_YSFGLEGSWQA_					0	0	0			REV__ENST00000449870.5_2_19:10800918-10801068:+|nuORF	REV__ENST00000449870.5_2_19:10800918-10801068:+|nuORF	MSMS	A375_MHC_IP_R2	2	622.7030029296875	2	622.782753	1243.55095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.69	1	79.435	78.935	79.935	0.74474								0	0	0	0.15016	1	29872	29872		20.415	6.5085	1		+		64225	24879	46832	47200	62581	62581					-0.06108070115897135
YSFPHYGFPTY	11	Unmodified	_YSFPHYGFPTY_					0	0	0		ENSG00000109320|ENST00000226574|NFKB1;nc|ENSG00000109320|P19838|NFKB1;nc|ENSG00000109320|P19838-3|NFKB1	ENSG00000109320|ENST00000226574|NFKB1	ENSG00000109320|ENST00000226574|NFKB1	MULTI-MSMS	A375_MHC_IP_R2	2	690.5543823242188	2	689.808771	1377.60299	-0.84415	-0.0005823	-0.86566	-0.00059714	-1.7098	-0.0011794	690.3107256753274	97.378	0.25564	98.134	97.974	98.23	0.75586					6	4	2	0	0	0	0.56199	1	36959	36959		26.268	14.773	1	1394500			64226	2863	46833	47201	62582	62582					-0.07070906702142565
YSGKVRYI	8	Unmodified	_YSGKVRYI_					0	0	0		ENSG00000172071|ENST00000303236|EIF2AK3	ENSG00000172071|ENST00000303236|EIF2AK3	ENSG00000172071|ENST00000303236|EIF2AK3	MULTI-MSMS	A375_MHC_IP_R1	1	493.67626953125	2	493.276909	984.539266	-0.65216	-0.0003217	-0.29753	-0.00014676	-0.94969	-0.00046846	493.27666662295735	26.772	0.45328	26.772	26.524	26.978	0					13	8	2	0	0	0	0.73622	1	8054	8054		24.021	11.489	1	2348000			64227	7678	46834	47202	62583	62583					0.04637777651419128
YSGSSHVVL	9	Unmodified	_YSGSSHVVL_					0	0	0		ENST00000534405.5_1_11:6413241-6415834:+|nuORF;nc|ENSG00000166311|P17405-3|SMPD1;nc|ENSG00000166311|P17405-2|SMPD1;nc|ENSG00000166311|P17405-4|SMPD1;ENSG00000166311|ENST00000342245|SMPD1	ENST00000534405.5_1_11:6413241-6415834:+|nuORF	ENST00000534405.5_1_11:6413241-6415834:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	475.1427001953125	2	474.742899	947.471246	-0.87573	-0.00041575	0.17445	8.2817E-05	-0.70129	-0.00033293	474.74291250129323	38.653	0.76557	39.427	39.2	39.965	0.77451					30	14	5	0	0	0	0.46038	1	14223	14223		21.747	0	1	29426000			64228	7056	46835	47203	62584	62584					-0.004590919992324416
YSGSSHVVL	9	Unmodified	_YSGSSHVVL_					0	0	0		ENST00000534405.5_1_11:6413241-6415834:+|nuORF;nc|ENSG00000166311|P17405-3|SMPD1;nc|ENSG00000166311|P17405-2|SMPD1;nc|ENSG00000166311|P17405-4|SMPD1;ENSG00000166311|ENST00000342245|SMPD1	ENST00000534405.5_1_11:6413241-6415834:+|nuORF	ENST00000534405.5_1_11:6413241-6415834:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	474.742899	947.471246	-0.57805	-0.00027443	0.56666	0.00026902	-0.011395	-5.4098E-06	474.7430986553687	39.466	0.70975	39.466	39.238	39.948	0	0.01943	0.00018803	NaN	21.747	23	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34417000			64229	7056	46835	47203							-0.004590919992324416
YSGSSHVVL	9	Unmodified	_YSGSSHVVL_					0	0	0		ENST00000534405.5_1_11:6413241-6415834:+|nuORF;nc|ENSG00000166311|P17405-3|SMPD1;nc|ENSG00000166311|P17405-2|SMPD1;nc|ENSG00000166311|P17405-4|SMPD1;ENSG00000166311|ENST00000342245|SMPD1	ENST00000534405.5_1_11:6413241-6415834:+|nuORF	ENST00000534405.5_1_11:6413241-6415834:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	474.742899	947.471246	-0.87573	-0.00041575	0.17445	8.2817E-05	-0.70129	-0.00033293	474.74291250129323	38.653	0.76557	39.427	39.2	39.965	0.77451	-0.01943	-0.00018437	NaN	21.747	30	14	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29426000			64230	7056	46835	47203							-0.004590919992324416
YSGWVTGLTT	10	Unmodified	_YSGWVTGLTT_					0	0	0		nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7	nc|ENSG00000138686|Q8IWZ6-2|BBS7	nc|ENSG00000138686|Q8IWZ6-2|BBS7	MULTI-SECPEP	A375_MHC_IP_R1	1	543.2272338867188	2	542.769114	1083.52368	-0.61709	-0.00033494	0.098402	5.341E-05	-0.51868	-0.00028153	542.7688697174164	60.775	0.30396	60.775	60.669	60.973	0					6	5	2	0	0	0	0.88918	1	21959	21959		18.146	18.146	1	709290			64231	5022	46836	47204	62585	62585					-0.014745536562941197
YSHEEPKF	8	Unmodified	_YSHEEPKF_					0	0	0		ENSG00000149289|ENST00000278590|ZC3H12C;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C	ENSG00000149289|ENST00000278590|ZC3H12C	ENSG00000149289|ENST00000278590|ZC3H12C	MULTI-MSMS	A375_MHC_IP_R1	1	519.6707153320312	2	518.740357	1035.46616	-0.22286	-0.00011561	-0.59323	-0.00030773	-0.81608	-0.00042334	518.7401009801022	48.17	0.6062	48.17	47.87	48.476	0					27	11	3	0	0	0	0.7766	1	17055	17055		7.2892	0	1	11412000			64232	5797	46837	47205	62586	62586					-0.05015395861846628
YSHFFPIF	8	Unmodified	_YSHFFPIF_					0	0	0		ENST00000272519.9_1_2:121052011-121052140:+|nuORF	ENST00000272519.9_1_2:121052011-121052140:+|nuORF	ENST00000272519.9_1_2:121052011-121052140:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	529.66064453125	2	529.260728	1056.5069	-0.72853	-0.00038558	0.42324	0.000224	-0.30529	-0.00016158	529.2608620069958	86.605	0.60725	86.605	86.325	86.933	0					32	11	3	0	0	0	0.7479	1	31723	31723		20.871	0	1	14064000			64233	10387	46838	47206	62587	62587					-0.019090097515800153
YSHFFPIF	8	Unmodified	_YSHFFPIF_					0	0	0		ENST00000272519.9_1_2:121052011-121052140:+|nuORF	ENST00000272519.9_1_2:121052011-121052140:+|nuORF	ENST00000272519.9_1_2:121052011-121052140:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	353.57611083984375	3	353.176244	1056.5069	-0.052409	-1.8509E-05	-0.15387	-5.4342E-05	-0.20627	-7.2851E-05	353.1760706767831	85.797	0.76252	86.533	86.239	87.001	0.73601					24	14	3	0	0	0	0.77702	1	32659	32659		3.9444	0.3479	1	2028000			64234	10387	46838	47206	62588	62588					-0.019090097515800153
YSHFFPIF	8	Unmodified	_YSHFFPIF_					0	0	0		ENST00000272519.9_1_2:121052011-121052140:+|nuORF	ENST00000272519.9_1_2:121052011-121052140:+|nuORF	ENST00000272519.9_1_2:121052011-121052140:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	353.176244	1056.5069	-0.2533	-8.9459E-05	0.3437	0.00012139	0.090399	3.1927E-05	353.176209610157	86.569	0.55608	86.569	86.325	86.881	0	0.017858	0.00019787	NaN	3.9444	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2807800			64235	10387	46838	47206							-0.019090097515800153
YSHFFPIF	8	Unmodified	_YSHFFPIF_					0	0	0		ENST00000272519.9_1_2:121052011-121052140:+|nuORF	ENST00000272519.9_1_2:121052011-121052140:+|nuORF	ENST00000272519.9_1_2:121052011-121052140:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	353.176244	1056.5069	-0.052409	-1.8509E-05	-0.15387	-5.4342E-05	-0.20627	-7.2851E-05	353.1760706767831	85.797	0.76252	86.533	86.239	87.001	0.73601	-0.017858	-0.00032932	NaN	3.9444	24	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2028000			64236	10387	46838	47206							-0.019090097515800153
YSHGTYRAGP	10	Unmodified	_YSHGTYRAGP_					0	0	0		ENSG00000187257|ENST00000334955|RSBN1L;RSBN1L|p.E815Gfs*12|1|0.47|ENSG00000187257|chr7:77779065-77779066|-/A|frameshift_variant;nc|ENSG00000187257|Q6PCB5-2|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	MULTI-MSMS	A375_MHC_IP_R2	2	556.1593627929688	2	554.762155	1107.50976	-1.1854	-0.0006576	-4.1404	-0.0022969	-5.3258	-0.0029545	554.7629297271989	26.26	1.0172	26.92	26.245	27.262	0.65992					53	19	5	0	0	0	0.70329	1	8820	8820		10.824	0.75	1	6495000			64237	8817	46839	47207	62589	62589					-0.039697863647234044
YSHQYPRL	8	Unmodified	_YSHQYPRL_					0	0	0			REV__nc|ENSG00000185101|A1A5B4-2|ANO9	REV__nc|ENSG00000185101|A1A5B4-2|ANO9	MULTI-MSMS	A375_MHC_IP_R1	1	355.4599609375	3	355.182169	1062.52468	0.02642	9.3839E-06	-0.085119	-3.0233E-05	-0.058699	-2.0849E-05	355.1820898672051	43.593	0.40799	43.593	43.451	43.859	0					13	7	2	0	0	0	0.77781	1	15139	15139		1.8442	0	1	2731800	+		64238	21868	46840	47208	62590	62590					-0.004082944967194635
YSHSCGMLQF	10	Unmodified	_YSHSCGMLQF_					0	0	0		ENST00000526700.5_1_16:70530266-70542451:-|nuORF	ENST00000526700.5_1_16:70530266-70542451:-|nuORF	ENST00000526700.5_1_16:70530266-70542451:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	586.7156372070312	2	586.746802	1171.47905	-0.076384	-4.4818E-05	0.47168	0.00027676	0.3953	0.00023194	586.7472171616394	72.095	1.5188	72.095	71.665	73.184	0					88	29	5	0	0	0	0.60608	1	26123	26123		20.415	6.5085	1	69649000			64239	13087	46841	47209	62591	62591					-0.09983024065627433
YSHSCGMLQF	10	Unmodified	_YSHSCGMLQF_					0	0	0		ENST00000526700.5_1_16:70530266-70542451:-|nuORF	ENST00000526700.5_1_16:70530266-70542451:-|nuORF	ENST00000526700.5_1_16:70530266-70542451:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	587.146484375	2	586.746802	1171.47905	-0.81511	-0.00047826	0.40726	0.00023896	-0.40785	-0.0002393	586.7472204574973	71.395	1.4169	72.13	71.706	73.122	0.73421					90	27	5	0	0	0	0.2347	2	27026	26993;27026		45.7	18.816	1	60340000			64240	13087	46841	47209	62592;62593	62593					-0.09983024065627433
YSHYRQNSG	9	Unmodified	_YSHYRQNSG_					0	0	0		ENST00000209875.8_1_12:54630896-54631028:-|nuORF	ENST00000209875.8_1_12:54630896-54631028:-|nuORF	ENST00000209875.8_1_12:54630896-54631028:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	556.6489868164062	2	556.249412	1110.48427	-0.88176	-0.00049048	0.60332	0.00033559	-0.27844	-0.00015488	556.2495086601758	70.927	0.50675	71.661	71.453	71.959	0.73421					16	9	2	0	0	0	0.41409	1	26908	26908		24.021	0.87215	1	4196900			64241	10081	46842	47210	62594	62594					-0.06655260887168879
YSHYRQNSG	9	Unmodified	_YSHYRQNSG_					0	0	0		ENST00000209875.8_1_12:54630896-54631028:-|nuORF	ENST00000209875.8_1_12:54630896-54631028:-|nuORF	ENST00000209875.8_1_12:54630896-54631028:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	556.249412	1110.48427	-0.33805	-0.00018804	0.40192	0.00022357	0.063874	3.553E-05	556.2495886146177	71.715	0.55275	71.715	71.415	71.968	0	0.026819	-9.0311E-05	NaN	24.021	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2651000			64242	10081	46842	47210							-0.06655260887168879
YSIPLRENW	9	Unmodified	_YSIPLRENW_					0	0	0		ENSG00000156162|ENST00000414645|DPY19L4;DPY19L4|p.I297Rfs*11|1|0.03|ENSG00000156162|chr8:94765200-94765242|AATCTACATATTTTCCCTCTTTCTGGGATATTTACTACAGTTT/-|frameshift_variant	ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	MULTI-MSMS	A375_MHC_IP_R1	1	589.7014770507812	2	589.303655	1176.59276	-0.46239	-0.00027249	-1.6722	-0.00098541	-2.1346	-0.0012579	589.3028268008959	80.667	0.45637	80.667	80.492	80.948	0					12	8	2	0	0	0	0.46465	1	29505	29505		21.537	2.28	1	1602800			64243	795	46843	47211	62595	62595					0.01152530363265214
YSIRGQLSW	9	Unmodified	_YSIRGQLSW_					0	0	0		ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1	ENSG00000099956|ENST00000644036|SMARCB1	ENSG00000099956|ENST00000644036|SMARCB1	MULTI-SECPEP	A375_MHC_IP_R1	1	555.6911010742188	2	555.290548	1108.56654	-0.46287	-0.00025703	-0.018372	-1.0202E-05	-0.48124	-0.00026723	555.2906855924714	72.782	0.86276	72.782	72.423	73.285	0					38	16	3	0	0	0	0.16595	1	26431	26431		53.404	35.258	1	5511000			64244	2096	46844	47212	62596	62596					0.01660261191796053
YSIRGQLSW	9	Unmodified	_YSIRGQLSW_					0	0	0		ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1	ENSG00000099956|ENST00000644036|SMARCB1	ENSG00000099956|ENST00000644036|SMARCB1	MULTI-MSMS	A375_MHC_IP_R2	2	556.3584594726562	2	555.290548	1108.56654	-1.0238	-0.00056852	-0.010559	-5.8635E-06	-1.0344	-0.00057438	555.29072010826	71.948	1.2172	72.682	72.414	73.632	0.73421					35	23	3	0	0	0	0.39657	1	27343	27343		26.268	0	1	5995800			64245	2096	46844	47212	62597	62597					0.01660261191796053
YSISIPVLY	9	Unmodified	_YSISIPVLY_					0	0	0			REV__nc|ENSG00000116906|O15228-2|GNPAT	REV__nc|ENSG00000116906|O15228-2|GNPAT	MULTI-SECPEP	A375_MHC_IP_R1	1	527.1921997070312	2	527.794601	1053.57465	-0.65557	-0.00034601	-0.89654	-0.00047319	-1.5521	-0.00081919	527.7939340174883	24.473	0.15034	24.473	24.397	24.547	0					4	2	2	0	0	0	0.69504	1	6971	6971		18.135	9.5417	1	2302200	+		64246	17981	46845	47213	62598	62598					0.05000395388560719
YSIWKHIY	8	Unmodified	_YSIWKHIY_					0	0	0			REV__nc|ENSG00000153246|Q13018-2|PLA2R1	REV__nc|ENSG00000153246|Q13018-2|PLA2R1	MSMS	A375_MHC_IP_R2	2	555.3880615234375	2	555.292559	1108.57057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.105	1	49.863	49.363	50.363	0.75737								0	0	0	0.16876	1	18447	18447		13.508	1.8676	1		+		64247	19834	46846	47214	62599	62599					0.020623506855145024
YSKEGWEY	8	Unmodified	_YSKEGWEY_					0	0	0		ENSG00000174917|ENST00000309324|MICOS13	ENSG00000174917|ENST00000309324|MICOS13	ENSG00000174917|ENST00000309324|MICOS13	MULTI-MSMS	A375_MHC_IP_R1	1	531.63232421875	2	531.232364	1060.45018	-0.52895	-0.000281	-0.21452	-0.00011396	-0.74347	-0.00039495	531.2322025263297	40.715	0.65811	40.715	40.355	41.013	0					29	12	3	0	0	0	0.16884	1	13970	13970		72.968	34.792	1	7630600			64248	7913	46847	47215	62600	62600					-0.07763102098738273
YSKEGWEY	8	Unmodified	_YSKEGWEY_					0	0	0		ENSG00000174917|ENST00000309324|MICOS13	ENSG00000174917|ENST00000309324|MICOS13	ENSG00000174917|ENST00000309324|MICOS13	MULTI-MSMS	A375_MHC_IP_R2	2	531.6317138671875	2	531.232364	1060.45018	-0.69681	-0.00037017	-0.25987	-0.00013805	-0.95667	-0.00050822	531.2321612645136	39.977	0.6599	40.752	40.473	41.133	0.77451					29	12	3	0	0	0	0.16498	1	14760	14760		79.596	41.421	1	9267300			64249	7913	46847	47215	62601	62601					-0.07763102098738273
YSKGSGTQGY	10	Unmodified	_YSKGSGTQGY_					0	0	0			REV__nc|ENSG00000089177|Q96L93-6|KIF16B;REV__ENSG00000197892|ENST00000524189|KIF13B	REV__ENSG00000197892|ENST00000524189|KIF13B	MULTI-MSMS	A375_MHC_IP_R2	2	524.6403198242188	2	524.240721	1046.46689	-0.38145	-0.00019997	-0.26665	-0.00013979	-0.64809	-0.00033976	524.2406438940017	86.485	0.9678	87.218	86.794	87.762	0.733					31	18	2	0	0	0	0.71245	1	32871	32871		6.7232	0	1	2464400	+		64250	22327;16907	46848	47216	62602	62602					-0.054486012128108996
YSKIESELE	9	Unmodified	_YSKIESELE_					0	0	0			REV__tr|U7SPE9|U7SPE9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01843PE=4SV=1	REV__tr|U7SPE9|U7SPE9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01843PE=4SV=1	MSMS	A375_MHC_IP_R1	1	549.169189453125	2	549.271687	1096.52882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.293	1	58.293	57.793	58.793	0								0	0	0	0.15142	1	20936	20936		19.257	0	1		+		64251	28358	46849	47217	62603	62603					-0.015582945843107154
YSKIQATNT	9	Unmodified	_YSKIQATNT_					0	0	0		nc|ENSG00000177575|Q86VB7-2|CD163;ENST00000537044.1_1_12:7633616-7656286:-|nuORF;ENSG00000177575|ENST00000432237|CD163;nc|ENSG00000177575|Q86VB7-4|CD163;nc|ENSG00000177575|Q86VB7|CD163	nc|ENSG00000177575|Q86VB7-2|CD163	nc|ENSG00000177575|Q86VB7-2|CD163	MSMS	A375_MHC_IP_R1	1	513.1839599609375	2	513.266739	1024.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.181	1	39.181	38.681	39.681	0								0	0	0	0.14677	1	13365	13365		26.884	4.1474	1				64252	13246	46850	47218	62604	62604					0.007645622009476938
YSKLNVCSI	9	Unmodified	_YSKLNVCSI_					0	0	0		ENSG00000159167|ENST00000290271|STC1;nc|ENSG00000159167|P52823-2|STC1	ENSG00000159167|ENST00000290271|STC1	ENSG00000159167|ENST00000290271|STC1	MULTI-MSMS	A375_MHC_IP_R2	2	513.21630859375	2	513.76806	1025.52157	-1.0187	-0.0005234	0.03651	1.8758E-05	-0.98224	-0.00050464	513.767977478408	37.876	1.8911	38.651	38.227	40.118	0.77451					75	36	3	0	0	0	0.27715	1	14041	14041		32.305	6.0373	1	7630100			64253	6355	46851	47219	62605	62605					0.009826943342659433
YSKLQERKP	9	Unmodified	_YSKLQERKP_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MSMS	A375_MHC_IP_R1	1	383.5891418457031	3	383.552262	1147.63496	0.077611	2.9768E-05	-0.41038	-0.0001574	-0.33277	-0.00012763	383.8864491352133	36.559	1.1139	36.559	35.982	37.096	0					59	20	4	0	0	0	0.73815	1	12324	12324		3.5871	3.5871	1	6722800			64254	8815	46852	47220	62606	62606					0.06704505771654112
YSKPKKELSNK	11	Unmodified	_YSKPKKELSNK_					0	0	0			REV__ENSG00000165807|ENST00000298705|PPP1R36	REV__ENSG00000165807|ENST00000298705|PPP1R36	MULTI-MSMS	A375_MHC_IP_R2	2	441.6541442871094	3	441.253993	1320.74015	-0.37832	-0.00016694	1.1302	0.0004987	0.75186	0.00033176	441.2543871433038	39.808	0.45734	40.583	40.371	40.828	0.77451					12	8	2	0	0	0	0.73502	1	14762	14762		4.1166	0	1	2507800	+		64255	20624	46853	47221	62607	62607					0.0926100217743624
YSKPTDISW	9	Unmodified	_YSKPTDISW_					0	0	0		nc|ENSG00000111261|Q9H8J5-2|MANSC1;ENSG00000111261|ENST00000535902|MANSC1	nc|ENSG00000111261|Q9H8J5-2|MANSC1	nc|ENSG00000111261|Q9H8J5-2|MANSC1	MULTI-MSMS	A375_MHC_IP_R2	2	549.168701171875	2	548.769114	1095.52368	-1.1123	-0.00061039	0.037293	2.0465E-05	-1.075	-0.00058992	548.7690194998539	57.497	0.86224	58.246	57.917	58.779	0.74894					25	16	3	0	0	0	0.12748	1	21777	21777		45.74	12.954	1	2827300			64256	2977	46854	47222	62608	62608					-0.02026553656287433
YSLDDIRRY	9	Unmodified	_YSLDDIRRY_					0	0	0		ENSG00000076003|ENST00000264156|MCM6;MCM6|p.R565C|1|0.29|ENSG00000076003|chr2:135852849-135852849|G/A|missense_variant	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-SECPEP	A375_MHC_IP_R1	1	401.2713623046875	3	400.871772	1199.59349	-0.30772	-0.00012336	0.12599	5.0504E-05	-0.18173	-7.2852E-05	401.206274462987	55.223	0.45583	55.223	54.975	55.431	0					17	8	3	0	0	0	0.5212	1	19792	19792		24.882	17.844	1	2056700			64257	1628	46855	47223	62609	62609					0.0016732501235310338
YSLDDIRRY	9	Unmodified	_YSLDDIRRY_					0	0	0		ENSG00000076003|ENST00000264156|MCM6;MCM6|p.R565C|1|0.29|ENSG00000076003|chr2:135852849-135852849|G/A|missense_variant	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	A375_MHC_IP_R2	2	401.27154541015625	3	400.871772	1199.59349	-0.22007	-8.8218E-05	0.12495	5.0089E-05	-0.095116	-3.8129E-05	400.87162295889914	54.628	0.50832	55.379	55.118	55.626	0.75075					20	9	3	0	0	0	0.17338	1	20635	20635		37.075	30.038	1	2093000			64258	1628	46855	47223	62610	62610					0.0016732501235310338
YSLDGSSCCW	10	Unmodified	_YSLDGSSCCW_					0	0	0		ENST00000586632.1_1_16:4774781-4774883:-|nuORF;ENST00000590803.5_1_16:4774781-4776797:-|nuORF	ENST00000586632.1_1_16:4774781-4774883:-|nuORF	ENST00000586632.1_1_16:4774781-4774883:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	561.107177734375	2	560.707342	1119.40013	-0.48502	-0.00027195	-0.20434	-0.00011457	-0.68936	-0.00038653	560.7074176205634	28.354	0.40393	28.354	28.188	28.592	0					11	7	2	0	0	0	0.60556	2	8786	8702;8786		20.454	3.3407	1	2688400			64259	13729	46856	47224	62611;62612	62612					-0.1547929609057519
YSLDGSSCCW	10	Unmodified	_YSLDGSSCCW_					0	0	0		ENST00000586632.1_1_16:4774781-4774883:-|nuORF;ENST00000590803.5_1_16:4774781-4776797:-|nuORF	ENST00000586632.1_1_16:4774781-4774883:-|nuORF	ENST00000586632.1_1_16:4774781-4774883:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	560.6432495117188	2	560.707342	1119.40013	-0.65015	-0.00036454	-0.20594	-0.00011547	-0.85609	-0.00048002	560.7071949153619	27.783	0.40442	28.462	28.251	28.655	0.67857					10	7	2	0	0	0	0.60556	2	9551	9551;9604		20.454	3.3407	1	2732300			64260	13729	46856	47224	62613;62614	62613					-0.1547929609057519
YSLELFGR	8	Unmodified	_YSLELFGR_					0	0	0		TRAPPC11|p.L520F|1|0.62|ENSG00000168538|chr4:183684832-183684832|C/T|missense_variant	TRAPPC11|p.L520F|1|0.62|ENSG00000168538|chr4:183684832-183684832|C/T|missense_variant	TRAPPC11|p.L520F|1|0.62|ENSG00000168538|chr4:183684832-183684832|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	493.17852783203125	2	492.761092	983.507631	-0.53408	-0.00026317	1.4626	0.00072072	0.92853	0.00045755	492.7617161978493	80.322	0.86314	81.067	80.759	81.622	0.74474					25	16	2	0	0	0	0.7338	1	30467	30467		24.674	0	1	1041100			64261	30070	46857	47225	62615	62615					0.015217848974771186
YSLELFGR	8	Unmodified	_YSLELFGR_					0	0	0		TRAPPC11|p.L520F|1|0.62|ENSG00000168538|chr4:183684832-183684832|C/T|missense_variant	TRAPPC11|p.L520F|1|0.62|ENSG00000168538|chr4:183684832-183684832|C/T|missense_variant	TRAPPC11|p.L520F|1|0.62|ENSG00000168538|chr4:183684832-183684832|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	492.761092	983.507631	-0.38074	-0.00018761	1.3035	0.00064232	0.92278	0.00045471	492.7618526667308	81.215	1.0138	81.215	80.897	81.911	0	0.073886	-3.2224E-05	NaN	24.674	25	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1367900			64262	30070	46857	47225							0.015217848974771186
YSLELVQYN	9	Unmodified	_YSLELVQYN_					0	0	0			REV__ENSG00000114204|ENST00000264677|SERPINI2	REV__ENSG00000114204|ENST00000264677|SERPINI2	MULTI-SECPEP	A375_MHC_IP_R2	2	376.93890380859375	3	376.85724	1127.54989	-0.23246	-8.7604E-05	-1.4657	-0.00055235	-1.6981	-0.00063996	377.19119237039854	26.02	0.40714	26.68	26.398	26.805	0.65992					14	7	3	0	0	0	0.73363	1	8719	8719		7.1017	0.90987	1	1362300	+		64263	17816	46858	47226	62616	62616					-0.008782844847928573
YSLHSEASGP	10	Unmodified	_YSLHSEASGP_					0	0	0			REV__nc|ENSG00000146166|Q5TDP6-3|LGSN	REV__nc|ENSG00000146166|Q5TDP6-3|LGSN	MULTI-MSMS	A375_MHC_IP_R2	2	525.6613159179688	2	524.240721	1046.46689	-0.51224	-0.00026854	-0.40954	-0.0002147	-0.92177	-0.00048323	524.2404904776644	41.841	1.0217	42.615	42.249	43.27	0.77451					61	19	5	0	0	0	0.58828	1	15492	15492		21.747	2.4897	1	20252000	+		64264	27277	46859	47227	62617	62617					-0.054486012128108996
YSLKLMPT	8	Unmodified	_YSLKLMPT_					0	0	0			REV__ENSG00000148468|ENST00000378116|FAM171A1	REV__ENSG00000148468|ENST00000378116|FAM171A1	MSMS	A375_MHC_IP_R2	2	476.5980224609375	2	476.762246	951.50994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.318	1	41.092	40.592	41.592	0.77451								0	0	0	0.16876	1	14926	14926		15.847	2.3393	1		+		64265	19633	46860	47228	62618	62618					0.03224497310930019
YSLLMLAWSFL	11	Unmodified	_YSLLMLAWSFL_					0	0	0			REV__GPR4|p.P193S|1|0.2|ENSG00000177464|chr19:45591290-45591290|G/A|missense_variant	REV__GPR4|p.P193S|1|0.2|ENSG00000177464|chr19:45591290-45591290|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	448.9734802246094	3	448.573787	1342.69953	-0.32006	-0.00014357	-0.53786	-0.00024127	-0.85791	-0.00038484	448.5735836932877	44.4	0.50663	45.169	44.934	45.441	0.7691					29	9	4	0	0	0	0.59093	1	16570	16570		14.218	0	1	6609500	+		64266	26702	46861	47229	62619	62619					0.04188944533416361
YSLRWIKV	8	Unmodified	_YSLRWIKV_					0	0	0			REV__ENST00000425684.1_1_2:24095375-24095597:-|nuORF	REV__ENST00000425684.1_1_2:24095375-24095597:-|nuORF	MSMS	A375_MHC_IP_R2	2	355.4599304199219	3	355.54656	1063.61785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.948	1	47.709	47.209	48.209	0.76128								0	0	0	0.16876	1	17593	17593		1.4819	0	1		+		64267	24638	46862	47230	62620	62620					0.08858629956512232
YSLSVYLVRQL	11	Unmodified	_YSLSVYLVRQL_					0	0	0		ENSG00000131788|ENST00000393045|PIAS3	ENSG00000131788|ENST00000393045|PIAS3	ENSG00000131788|ENST00000393045|PIAS3	MULTI-MSMS	A375_MHC_IP_R1	1	670.777587890625	2	670.88227	1339.74999	-0.58768	-0.00039426	0.049291	3.3069E-05	-0.53838	-0.00036119	670.8821024101776	103.9	0.96785	103.9	103.27	104.24	0					41	18	4	0	0	0	0.73016	1	38017	38017		8.7454	2.0222	1	13279000			64268	4352	46863	47231	62621	62621					0.09370190182789884
YSLTHLASF	9	Unmodified	_YSLTHLASF_					0	0	0		ENST00000527969.1_1_11:65636240-65636879:-|nuORF	ENST00000527969.1_1_11:65636240-65636879:-|nuORF	ENST00000527969.1_1_11:65636240-65636879:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	519.9859008789062	2	519.766374	1037.5182	-0.67354	-0.00035008	-0.061569	-3.2001E-05	-0.7351	-0.00038208	519.7663154468893	77.803	0.31008	78.546	78.365	78.676	0.74293					8	5	2	0	0	0	0.65246	1	29577	29577		10.824	3.5347	1	1849400			64269	13110	46864	47232	62622	62622					0.0009376755190260155
YSLYQKAEEY	10	Unmodified	_YSLYQKAEEY_					0	0	0			REV__ENSG00000150687|ENST00000280258|PRSS23	REV__ENSG00000150687|ENST00000280258|PRSS23	MULTI-SECPEP	A375_MHC_IP_R2	2	431.2879333496094	3	431.871438	1292.59248	-0.30399	-0.00013128	-0.07725	-3.3362E-05	-0.38124	-0.00016464	431.87149097063235	45.177	0.45568	45.942	45.796	46.252	0.76518					14	8	2	0	0	0	0.94163	1	16934	16934		1.7423	0.14999	1	1085600	+		64270	19723	46865	47233	62623	62623					-0.04210934147249645
YSMECDLAY	9	Unmodified	_YSMECDLAY_					0	0	0			REV__ENSG00000079313|ENST00000170168|REXO1	REV__ENSG00000079313|ENST00000170168|REXO1	MULTI-MSMS	A375_MHC_IP_R1	1	548.1110229492188	2	547.712093	1093.40963	-0.48303	-0.00026456	-2.4644	-0.0013498	-2.9474	-0.0016143	547.711452866914	102.1	0.5067	102.1	101.85	102.35	0					24	9	3	0	0	0	0.64808	1	37531	37531		11.64	1.5664	1	2182900	+		64271	16729	46866	47234	62624	62624					-0.13333527805070844
YSMNDEMKE	9	Unmodified	_YSMNDEMKE_					0	0	0		ENSG00000132681|ENST00000368081|ATP1A4	ENSG00000132681|ENST00000368081|ATP1A4	ENSG00000132681|ENST00000368081|ATP1A4	MSMS	A375_MHC_IP_R1	1	573.6748046875	2	573.725732	1145.43691	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.06	1	103.06	102.56	103.56	0								0	0	0	0.15486	1	37869	37869		7.2892	0	1				64272	4440	46867	47235	62625	62625					-0.12999044264665827
YSMSNESGY	9	Unmodified	_YSMSNESGY_					0	0	0			REV__ENSG00000112234|ENST00000369244|FBXL4	REV__ENSG00000112234|ENST00000369244|FBXL4	MULTI-MSMS	A375_MHC_IP_R1	1	519.6669311523438	2	519.197664	1036.38078	-0.69099	-0.00035876	0.77985	0.0004049	0.088859	4.6135E-05	519.1979776452129	53.053	0.55652	53.053	52.744	53.301	0					17	10	2	0	0	0	0.69674	2	18860	18860;18892		7.2892	2.5332	1	2165500	+		64273	17717	46868	47236	62626;62627	62626					-0.13595929109806093
YSMSNESGY	9	Unmodified	_YSMSNESGY_					0	0	0			REV__ENSG00000112234|ENST00000369244|FBXL4	REV__ENSG00000112234|ENST00000369244|FBXL4	MULTI-SECPEP	A375_MHC_IP_R1	1	518.9712524414062	2	519.197664	1036.38078	-0.69099	-0.00035876	0.77985	0.0004049	0.088859	4.6135E-05	519.1979776452129	53.053	0.55652	53.053	52.744	53.301	0					17	10	2	0	0	0	0.78798	1	18842	18842		7.2892	2.5332	1	2165500	+		64274	17717	46868	47236	62628	62628					-0.13595929109806093
YSMSNESGY	9	Unmodified	_YSMSNESGY_					0	0	0			REV__ENSG00000112234|ENST00000369244|FBXL4	REV__ENSG00000112234|ENST00000369244|FBXL4	MULTI-MSMS	A375_MHC_IP_R2	2	519.6659545898438	2	519.197664	1036.38078	-1.1264	-0.00058481	1.1009	0.0005716	-0.025435	-1.3206E-05	519.1981884880319	52.421	0.55699	53.174	52.983	53.54	0.75225					16	10	2	0	0	0	0.69674	3	19692	19692;19699;19806		7.2892	2.5332	1	2029300	+		64275	17717	46868	47236	62629;62630;62631	62629					-0.13595929109806093
YSMSNESGY	9	Unmodified	_YSMSNESGY_					0	0	0			REV__ENSG00000112234|ENST00000369244|FBXL4	REV__ENSG00000112234|ENST00000369244|FBXL4	MULTI-SECPEP	A375_MHC_IP_R2	2	518.9714965820312	2	519.197664	1036.38078	-1.1264	-0.00058481	1.1009	0.0005716	-0.025435	-1.3206E-05	519.1981884880319	52.421	0.55699	53.174	52.983	53.54	0.75225					16	10	2	0	0	0	0.78798	1	19724	19724		7.2892	2.5332	1	2029300	+		64276	17717	46868	47236	62632	62632					-0.13595929109806093
YSNEDTLSVA	10	Unmodified	_YSNEDTLSVA_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MSMS	A375_MHC_IP_R2	2	549.6494750976562	2	549.751118	1097.48768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.946	1	44.715	44.215	45.215	0.7691								0	0	0	0.15207	1	16389	16389		13.906	0	1				64277	9882	46869	47237	62633	62633					-0.05716055623815919
YSNERTYIKEH	11	Unmodified	_YSNERTYIKEH_					0	0	0			REV__ZNF676|p.R161K|1|0.18|ENSG00000196109|chr19:22181235-22181235|C/T|missense_variant	REV__ZNF676|p.R161K|1|0.18|ENSG00000196109|chr19:22181235-22181235|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	720.750244140625	2	720.349323	1438.68409	-0.66733	-0.00048071	1.6318	0.0011755	0.96451	0.00069479	720.3502301587762	68.815	0.35407	69.55	69.323	69.677	0.73511					9	6	2	0	0	0	0.99507	1	26104	26104		7.609	1.4032	1	1898800	+		64278	29049	46870	47238	62634	62634					-0.0177025073007826
YSNFEKEY	8	Unmodified	_YSNFEKEY_					0	0	0		ENSG00000186867|ENST00000394427|QRFPR	ENSG00000186867|ENST00000394427|QRFPR	ENSG00000186867|ENST00000394427|QRFPR	MULTI-SECPEP	A375_MHC_IP_R1	1	540.1470947265625	2	540.237647	1078.46074	-0.29007	-0.00015671	1.633	0.00088221	1.3429	0.00072551	540.7406750648737	48.323	0.60819	48.323	48.02	48.629	0					16	11	2	0	0	0	0.972	1	16959	16959		11.64	6.4096	1	1786700			64279	8785	46871	47239	62635	62635					-0.0753511944433285
YSNHLKRF	8	Unmodified	_YSNHLKRF_					0	0	0			REV__TRAPPC2L|p.R97C|1|0.52|ENSG00000167515|chr16:88859745-88859745|C/T|missense_variant	REV__TRAPPC2L|p.R97C|1|0.52|ENSG00000167515|chr16:88859745-88859745|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	355.45977783203125	3	355.526047	1063.55631	0.12582	4.4733E-05	-1.3793	-0.00049036	-1.2534	-0.00044563	355.8603665937931	42.461	0.15104	42.461	42.386	42.537	0					4	2	2	0	0	0	0.77562	1	14699	14699		10.824	4.1008	1	601590	+		64280	20765	46872	47240	62636	62636					0.027076982571998087
YSNKLPEFT	9	Unmodified	_YSNKLPEFT_					0	0	0			REV__nc|ENSG00000164318|Q63HQ2-4|EGFLAM	REV__nc|ENSG00000164318|Q63HQ2-4|EGFLAM	MULTI-SECPEP	A375_MHC_IP_R2	2	550.177001953125	2	549.776939	1097.53933	-0.81457	-0.00044783	0.69102	0.00037991	-0.12355	-6.7926E-05	549.7773518957445	30.975	0.50611	31.694	31.417	31.923	0.71857					13	9	2	0	0	0	0.76827	1	10946	10946		3.5965	3.2895	1	2741900	+		64281	20482	46873	47241	62637	62637					-0.005542671392504417
YSNLGNVY	8	Unmodified	_YSNLGNVY_					0	0	0		nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;ENST00000488174.5_1_X:70752999-70764494:+|nuORF	nc|ENSG00000147162|O15294-3|OGT	nc|ENSG00000147162|O15294-3|OGT	MULTI-MSMS	A375_MHC_IP_R1	1	465.67388916015625	2	465.2218	928.429047	-0.18302	-8.5145E-05	1.6523	0.00076869	1.4693	0.00068354	465.2227200646419	57.185	0.86683	57.185	56.701	57.568	0					22	16	2	0	0	0	0.67331	2	20460	20460;20501		41.84	22.401	1	3312200			64282	5664	46874	47242	62638;62639	62638					-0.03803067407625349
YSNLREQF	8	Unmodified	_YSNLREQF_					0	0	0			REV__nc|ENSG00000113569|O75694-2|NUP155	REV__nc|ENSG00000113569|O75694-2|NUP155	MULTI-MSMS	A375_MHC_IP_R2	2	530.1661987304688	2	528.759081	1055.50361	-0.71754	-0.0003794	0.18052	9.5451E-05	-0.53702	-0.00028395	528.7582573664905	39.102	1.0716	39.877	39.401	40.473	0.77451					50	20	4	0	0	0	0.7256	1	14335	14335		26.884	1.4843	1	18702000	+		64283	17787	46875	47243	62640	62640					-0.02192304596246686
YSNQSSCMWD	10	Unmodified	_YSNQSSCMWD_					0	0	0			REV__chr5:50799958-50815432|108|13.02|0.0|20.31|+|0|TE_info:MLT1A0,MLT1A0_dup6867,ERVL-MaLR,LTR,donor,+,50799662,50799958|None,PARP8|1	REV__chr5:50799958-50815432|108|13.02|0.0|20.31|+|0|TE_info:MLT1A0,MLT1A0_dup6867,ERVL-MaLR,LTR,donor,+,50799662,50799958|None,PARP8|1	MULTI-SECPEP	A375_MHC_IP_R1	1	611.1203002929688	2	610.720981	1219.42741	-0.18993	-0.00011599	-0.52751	-0.00032216	-0.71744	-0.00043815	610.720570824972	20.716	0.5112	20.716	20.384	20.895	0					14	9	2	0	0	0	0.94667	1	5409	5409		1.1933	1.1933	1	1375800	+		64284	15761	46876	47244	62641	62641					-0.173528125501889
YSNQSSCMWD	10	Unmodified	_YSNQSSCMWD_					0	0	0			REV__chr5:50799958-50815432|108|13.02|0.0|20.31|+|0|TE_info:MLT1A0,MLT1A0_dup6867,ERVL-MaLR,LTR,donor,+,50799662,50799958|None,PARP8|1	REV__chr5:50799958-50815432|108|13.02|0.0|20.31|+|0|TE_info:MLT1A0,MLT1A0_dup6867,ERVL-MaLR,LTR,donor,+,50799662,50799958|None,PARP8|1	MULTI-SECPEP	A375_MHC_IP_R2	2	611.1204833984375	2	610.720981	1219.42741	-0.77868	-0.00047555	-0.20543	-0.00012546	-0.98411	-0.00060102	610.7209581633865	19.352	0.25428	19.955	19.833	20.088	0.60308					11	4	3	0	0	0	0.92772	1	5966	5966		11.495	2.1473	1	2160000	+		64285	15761	46876	47244	62642	62642					-0.173528125501889
YSNSSGGSYDE	11	Unmodified	_YSNSSGGSYDE_					0	0	0		ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MSMS	A375_MHC_IP_R2	2	389.16448974609375	3	389.147519	1164.42073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.859	1	18.455	17.955	18.955	0.59616								0	0	0	0.1636	1	5277	5277		0	0	1				64286	1572	46877	47245	62643	62643					-0.15490710905555716
YSPGHDWIC	9	Unmodified	_YSPGHDWIC_					0	0	0			REV__ENSG00000137558|ENST00000260113|PI15	REV__ENSG00000137558|ENST00000260113|PI15	MULTI-MSMS	A375_MHC_IP_R2	2	1076.4771728515625	1	1077.44584	1076.43857	0.086968	9.3704E-05	-1.4803	-0.001595	-1.3934	-0.0015013	1077.4460033892133	122.93	1.5177	123.31	122.92	124.44	0.3766					51	29	3	0	0	0	0.6898	1	47106	47106		7.9102	0	1	105390000	+		64287	19018	46878	47246	62644	62644					-0.09659622393746758
YSPGHDWIC	9	Unmodified	_YSPGHDWIC_					0	0	0			REV__ENSG00000137558|ENST00000260113|PI15	REV__ENSG00000137558|ENST00000260113|PI15	MULTI-MATCH	A375_MHC_IP_R1	1		1	1077.44584	1076.43857	-0.47919	-0.0005163	-0.49522	-0.00053357	-0.97441	-0.0010499	1077.4468040785807	123.33	1.1077	123.33	123.13	124.24	0	0.012755	0.00073691	NaN	7.9102	45	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152710000	+		64288	19018	46878	47246							-0.09659622393746758
YSPRDEEEEM	10	Unmodified	_YSPRDEEEEM_					0	0	0		ENSG00000116147|ENST00000367674|TNR;TNR|p.T988Nfs*60|1|0.08|ENSG00000116147|chr1:175359623-175359623|G/-|frameshift_variant	ENSG00000116147|ENST00000367674|TNR	ENSG00000116147|ENST00000367674|TNR	MSMS	A375_MHC_IP_R1	1	642.687744140625	2	642.756075	1283.4976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.71	1	100.71	100.21	101.21	0								0	0	0	0.15332	1	37017	37017		10.074	1.9184	1				64289	3376	46879	47247	62645	62645					-0.13281235680733516
YSQCLELPW	9	Unmodified	_YSQCLELPW_					0	0	0			REV__ENST00000564973.1_1_16:2569080-2569164:+|nuORF	REV__ENST00000564973.1_1_16:2569080-2569164:+|nuORF	MSMS	A375_MHC_IP_R1	1	569.6634521484375	2	569.765517	1137.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.501	1	32.501	32.001	33.001	0								0	0	0	0.1493	1	10507	10507		22.736	2.2827	1		+		64290	26224	46880	47248	62646	62646					-0.04677609528380344
YSQDYQQFY	9	Unmodified	_YSQDYQQFY_					0	0	0		ENSG00000003756|ENST00000347869|RBM5;RBM5|p.R574Efs*14|1|0.15|ENSG00000003756|chr3:50114049-50114050|-/G|frameshift_variant;ENST00000494360.5_1_3:50144211-50147205:+|nuORF;ENST00000489437.1_1_3:50144918-50148299:+|nuORF;ENST00000441812.6_1_3:50144918-50150831:+|nuORF	ENSG00000003756|ENST00000347869|RBM5	ENSG00000003756|ENST00000347869|RBM5	MULTI-MSMS	A375_MHC_IP_R1	1	621.6980590820312	2	621.259111	1240.50367	-0.28663	-0.00017807	-0.19433	-0.00012073	-0.48096	-0.0002988	621.2589171813993	71.322	0.96601	71.322	70.749	71.715	0					49	18	4	0	0	0	0.004184	1	25992	25992		160.52	126.11	1	25110000			64291	861	46881	47249	62647	62647					-0.10696349386898873
YSQDYQQFY	9	Unmodified	_YSQDYQQFY_					0	0	0		ENSG00000003756|ENST00000347869|RBM5;RBM5|p.R574Efs*14|1|0.15|ENSG00000003756|chr3:50114049-50114050|-/G|frameshift_variant;ENST00000494360.5_1_3:50144211-50147205:+|nuORF;ENST00000489437.1_1_3:50144918-50148299:+|nuORF;ENST00000441812.6_1_3:50144918-50150831:+|nuORF	ENSG00000003756|ENST00000347869|RBM5	ENSG00000003756|ENST00000347869|RBM5	MULTI-SECPEP	A375_MHC_IP_R2	2	621.6589965820312	2	621.259111	1240.50367	-0.82178	-0.00051054	-0.06471	-4.0202E-05	-0.88649	-0.00055074	621.2590013469598	70.912	1.9762	71.646	70.895	72.871	0.73421					63	38	3	0	0	0	0.008833	1	26818	26818		160.52	129.88	1	26085000			64292	861	46881	47249	62648	62648					-0.10696349386898873
YSQEAFSHQ	9	Unmodified	_YSQEAFSHQ_					0	0	0			REV__nc|ENSG00000015520|Q9UHC9-4|NPC1L1	REV__nc|ENSG00000015520|Q9UHC9-4|NPC1L1	MULTI-MSMS	A375_MHC_IP_R1	1	548.6348266601562	2	548.738345	1095.46214	-0.56781	-0.00031158	1.5567	0.00085424	0.98892	0.00054266	548.7381292293155	47.326	1.4239	47.326	46.647	48.071	0					88	27	4	0	0	0	0.64808	1	16731	16731		11.64	0	1	46958000	+		64293	16247	46882	47250	62649	62649					-0.08177485355577119
YSQEPIKTF	9	Unmodified	_YSQEPIKTF_					0	0	0		ENSG00000164338|ENST00000296792|UTP15;nc|ENSG00000164338|Q8TED0-3|UTP15	ENSG00000164338|ENST00000296792|UTP15	ENSG00000164338|ENST00000296792|UTP15	MULTI-SECPEP	A375_MHC_IP_R1	1	557.1845092773438	2	556.784764	1111.55498	-0.6714	-0.00037383	0.24097	0.00013417	-0.43044	-0.00023966	556.7848338594301	47.036	0.61657	47.036	46.749	47.366	0					19	11	2	0	0	0	0.021951	1	16515	16515		103.82	71.038	1	10600000			64294	6829	46883	47251	62650	62650					0.0036601937779323634
YSQEPIKTF	9	Unmodified	_YSQEPIKTF_					0	0	0		ENSG00000164338|ENST00000296792|UTP15;nc|ENSG00000164338|Q8TED0-3|UTP15	ENSG00000164338|ENST00000296792|UTP15	ENSG00000164338|ENST00000296792|UTP15	MULTI-SECPEP	A375_MHC_IP_R2	2	557.1832885742188	2	556.784764	1111.55498	-0.67953	-0.00037835	0.086538	4.8183E-05	-0.59299	-0.00033017	556.7846212835533	46.288	0.86195	47.054	46.503	47.364	0.76518					24	16	2	0	0	0	0.035151	1	17302	17302		93.938	59.006	1	6386500			64295	6829	46883	47251	62651	62651					0.0036601937779323634
YSQNVRLKLL	10	Unmodified	_YSQNVRLKLL_					0	0	0		ENST00000458578.6_1_22:21976769-21977039:+|nuORF	ENST00000458578.6_1_22:21976769-21977039:+|nuORF	ENST00000458578.6_1_22:21976769-21977039:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	412.31494140625	3	411.915312	1232.72411	0.21319	8.7816E-05	-0.36211	-0.00014916	-0.14892	-6.1342E-05	411.91511240876724	56.969	0.40669	56.969	56.804	57.211	0					14	7	3	0	0	0	0.70312	1	20461	20461		10.899	0	1	1965100			64296	12148	46884	47252	62652	62652					0.1170534073116869
YSQPPYNQGGY	11	Unmodified	_YSQPPYNQGGY_					0	0	0		nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	MULTI-MSMS	A375_MHC_IP_R2	2	637.3689575195312	2	637.277835	1272.54112	-0.84214	-0.00053668	-0.020101	-1.281E-05	-0.86224	-0.00054949	637.2777960746928	45.359	0.45568	46.124	45.796	46.252	0.76519					13	8	2	0	0	0	0.4429	1	16850	16850		35.612	26.068	1	1805100			64297	2589;14524	46885	47253	62653	62653					-0.08425258121292245
YSQPPYNQGGY	11	Unmodified	_YSQPPYNQGGY_					0	0	0		nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	MULTI-MATCH	A375_MHC_IP_R1	1		2	637.277835	1272.54112	-0.53687	-0.00034213	0.13679	8.7176E-05	-0.40007	-0.00025496	637.2777944830312	45.836	0.60991	45.836	45.484	46.094	0	-0.14445	0.00013151	NaN	35.612	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1364600			64298	2589;14524	46885	47253							-0.08425258121292245
YSQVAKPLLV	10	Unmodified	_YSQVAKPLLV_					0	0	0		nc|ENSG00000055957|P19827-3|ITIH1;nc|ENSG00000055957|P19827-2|ITIH1;ENSG00000055957|ENST00000273283|ITIH1	nc|ENSG00000055957|P19827-3|ITIH1	nc|ENSG00000055957|P19827-3|ITIH1	MSMS	A375_MHC_IP_R1	1	373.2651062011719	3	373.225375	1116.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.086	1	28.086	27.586	28.586	0								0	0	0	0.15309	1	8614	8614		6.6235	1.5759	1				64299	1275	46886	47254	62654	62654					0.10063462062544204
YSRGQFARDEY	11	Unmodified	_YSRGQFARDEY_					0	0	0			REV__ENSG00000163254|ENST00000282141|CRYGC	REV__ENSG00000163254|ENST00000282141|CRYGC	MSMS	A375_MHC_IP_R1	1	696.0900268554688	2	696.320565	1390.62658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.45	1	138.45	137.95	138.95	0								0	0	0	0.16307	1	53257	53257		2.7352	1.2533	1		+		64300	20346	46887	47255	62655	62655					-0.053110929356080305
YSRKCPLDLH	10	Unmodified	_YSRKCPLDLH_					0	0	0			REV__nc|ENSG00000121075|P57082|TBX4	REV__nc|ENSG00000121075|P57082|TBX4	MULTI-SECPEP	A375_MHC_IP_R2	2	615.7364501953125	2	616.31624	1230.61793	-0.79601	-0.00049059	-3.4837	-0.002147	-4.2797	-0.0026376	616.313885490395	62.19	0.2555	62.932	62.824	63.079	0.74263					7	4	2	0	0	0	0.91442	1	23627	23627		11.495	0	1	887670	+		64301	18147	46888	47256	62656	62656					0.011842618941955152
YSRKGFLF	8	Unmodified	_YSRKGFLF_					0	0	0		SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	509.6797790527344	2	509.279452	1016.54435	-0.34045	-0.00017338	-0.24656	-0.00012557	-0.587	-0.00029895	509.2793924569307	55.953	0.86161	55.953	55.687	56.548	0					40	16	5	0	0	0	0.72637	1	20019	20019		47.749	47.749	1	8811500			64302	9018	46889	47257	62657	62657					0.036740815140547056
YSRKGFLF	8	Unmodified	_YSRKGFLF_					0	0	0		SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	SUPT5H|p.T1036Hfs*24|1|0.63|ENSG00000196235|chr19:39476156-39476157|-/C|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	509.6787109375	2	509.279452	1016.54435	-0.89858	-0.00045763	0.26922	0.00013711	-0.62936	-0.00032052	509.279643986313	54.879	0.71374	55.63	55.37	56.084	0.75075					29	13	3	0	0	0	0.85715	1	20712	20712		29.082	16.55	1	7103000			64303	9018	46889	47257	62658	62658					0.036740815140547056
YSSDEGFYDP	10	Unmodified	_YSSDEGFYDP_					0	0	0		ASCL1|p.S218F|1|0.23|ENSG00000139352|chr12:102958897-102958897|C/T|missense_variant	ASCL1|p.S218F|1|0.23|ENSG00000139352|chr12:102958897-102958897|C/T|missense_variant	ASCL1|p.S218F|1|0.23|ENSG00000139352|chr12:102958897-102958897|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	394.55487060546875	3	393.820743	1178.4404	0.26264	0.00010343	-0.75512	-0.00029738	-0.49248	-0.00019395	394.15454219683846	111.78	0.6097	111.78	111.52	112.13	0					34	11	4	0	0	0	0.94163	1	40988	40988		3.5871	0	1	3162000			64304	191	46890	47258	62659	62659					-0.14168334894793588
YSSESFAEHF	10	Unmodified	_YSSESFAEHF_					0	0	0			REV__FAM227B|p.P268S|1|0.38|ENSG00000166262|chr15:49541752-49541752|G/A|missense_variant	REV__FAM227B|p.P268S|1|0.38|ENSG00000166262|chr15:49541752-49541752|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	602.6510620117188	2	602.251286	1202.48802	-0.26033	-0.00015678	-0.17938	-0.00010803	-0.43971	-0.00026482	602.2510408483192	37.581	0.46037	37.581	37.351	37.812	0					20	8	3	0	0	0	0.43117	1	12683	12683		32.305	8.2849	1	9590800	+		64305	26613	46891	47259	62660	62660					-0.10512635903955925
YSSESFAEHF	10	Unmodified	_YSSESFAEHF_					0	0	0			REV__FAM227B|p.P268S|1|0.38|ENSG00000166262|chr15:49541752-49541752|G/A|missense_variant	REV__FAM227B|p.P268S|1|0.38|ENSG00000166262|chr15:49541752-49541752|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	602.6508178710938	2	602.251286	1202.48802	-1.1296	-0.00068033	0.52412	0.00031565	-0.60552	-0.00036468	602.2515179728858	36.989	0.71142	37.759	37.308	38.02	0.7709					26	13	3	0	0	0	0.43117	1	13516	13516		32.305	3.8186	1	8577600	+		64306	26613	46891	47259	62661	62661					-0.10512635903955925
YSSFGRESF	9	Unmodified	_YSSFGRESF_					0	0	0			REV__ENST00000433232.5_1_19:37176906-37177615:-|nuORF	REV__ENST00000433232.5_1_19:37176906-37177615:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	540.642822265625	2	540.243264	1078.47197	-1.1776	-0.00063617	-0.42791	-0.00023118	-1.6055	-0.00086735	540.2432538581745	33.317	0.45702	34.069	33.942	34.399	0.75225					12	8	2	0	0	0	0.56537	1	11963	11963		22.736	3.4793	1	2991200	+		64307	24726	46892	47260	62662	62662					-0.06412297350175322
YSSGLVRLY	9	Unmodified	_YSSGLVRLY_					0	0	0		ENSG00000115827|ENST00000375255|DCAF17;ENST00000468592.5_1_2:172300063-172325523:+|nuORF	ENSG00000115827|ENST00000375255|DCAF17	ENSG00000115827|ENST00000375255|DCAF17	MULTI-SECPEP	A375_MHC_IP_R1	1	529.6880493164062	2	529.287474	1056.5604	-0.047731	-2.5264E-05	0.95199	0.00050388	0.90426	0.00047861	529.2880610136182	69.582	0.86131	69.582	69.173	70.034	0					19	16	2	0	0	0	0.38578	1	25251	25251		41.84	16.44	1	2698900			64308	3343	46893	47261	62663	62663					0.03437742960295509
YSSMFILSTTN	11	Unmodified	_YSSMFILSTTN_					0	0	0		CACNA1A|p.S1590Cfs*4|1|0.15|ENSG00000141837|chr19:13253087-13253088|AG/-|frameshift_variant;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A	CACNA1A|p.S1590Cfs*4|1|0.15|ENSG00000141837|chr19:13253087-13253088|AG/-|frameshift_variant	CACNA1A|p.S1590Cfs*4|1|0.15|ENSG00000141837|chr19:13253087-13253088|AG/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	422.6214294433594	3	421.86904	1262.58529	-0.29257	-0.00012343	-0.93641	-0.00039504	-1.229	-0.00051847	421.8686340175077	49.436	1.4177	50.193	48.98	50.398	0.75736					35	27	2	0	0	0	0.99838	1	18375	18375		2.084	2.084	1	983640			64309	273	46894	47262	62664	62664					-0.035499900192917266
YSSNRYSKYP	10	Unmodified	_YSSNRYSKYP_					0	0	0			REV__ENSG00000177311|ENST00000321464|ZBTB38	REV__ENSG00000177311|ENST00000321464|ZBTB38	MSMS	A375_MHC_IP_R2	2	632.7191772460938	2	632.801477	1263.5884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.478	1	67.215	66.715	67.715	0.73631								0	0	0	0.1524	1	25187	25187		13.042	0.80181	1		+		64310	21453	46895	47263	62665	62665					-0.03284978850274456
YSSPYPQEY	9	Unmodified	_YSSPYPQEY_					0	0	0		ENSG00000083168|ENST00000265713|KAT6A;ENST00000490365.1_1_10:76737066-76741701:+|nuORF;nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B	ENSG00000083168|ENST00000265713|KAT6A;nc|ENSG00000156650|Q8WYB5-3|KAT6B	ENSG00000083168|ENST00000265713|KAT6A	MULTI-MSMS	A375_MHC_IP_R1	1	567.643310546875	2	567.242929	1132.47131	-0.37965	-0.00021536	0.19618	0.00011128	-0.18348	-0.00010408	567.2429198284378	54.995	0.81211	54.995	54.619	55.431	0					42	15	4	0	0	0	0.0042663	1	19591	19591		160.69	118.73	1	27101000			64311	1772;6202	46896	47264	62666	62666					-0.08963136789884629
YSSPYPQEY	9	Unmodified	_YSSPYPQEY_					0	0	0		ENSG00000083168|ENST00000265713|KAT6A;ENST00000490365.1_1_10:76737066-76741701:+|nuORF;nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B	ENSG00000083168|ENST00000265713|KAT6A;nc|ENSG00000156650|Q8WYB5-3|KAT6B	ENSG00000083168|ENST00000265713|KAT6A	MULTI-MSMS	A375_MHC_IP_R2	2	568.6737670898438	2	567.242929	1132.47131	-0.60373	-0.00034246	-0.031698	-1.798E-05	-0.63543	-0.00036044	567.2427822657411	54.423	0.8631	55.174	54.763	55.626	0.75075					51	16	4	0	0	0	0.064406	1	20555	20555		58.679	39.422	1	23766000			64312	1772;6202	46896	47264	62667	62667					-0.08963136789884629
YSSSRKVTY	9	Unmodified	_YSSSRKVTY_					0	0	0		ENST00000478691.5_1_1:23664326-23665089:-|nuORF;ENST00000453465.1_1_10:21915067-21915193:-|nuORF;ENST00000490652.1_1_1:23664981-23665089:-|nuORF	ENST00000478691.5_1_1:23664326-23665089:-|nuORF	ENST00000478691.5_1_1:23664326-23665089:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	364.5891418457031	3	364.189101	1089.54547	-0.29541	-0.00010758	0.20662	7.5249E-05	-0.088784	-3.2334E-05	364.1891306770025	18.843	0.31025	19.447	19.423	19.733	0.60308					10	7	2	0	0	0	0.74412	1	5642	5642		6.6304	0.84694	1	66696000			64313	12098	46897	47265	62668	62668					0.004282510923076188
YSSSRSDLY	9	Unmodified	_YSSSRSDLY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENST00000568578.5_1_X:135956303-135956645:-|nuORF	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	A375_MHC_IP_R1	1	539.6836547851562	2	539.246003	1076.47745	-0.8493	-0.00045798	0.24152	0.00013024	-0.60778	-0.00032774	539.2460162757504	27.816	0.60403	27.816	27.584	28.188	0					27	11	3	0	0	0	0.035419	1	8547	8547		70.332	39.695	1	13984000			64314	5675	46898	47266	62669	62669					-0.057726185583760525
YSSSRSDLY	9	Unmodified	_YSSSRSDLY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENST00000568578.5_1_X:135956303-135956645:-|nuORF	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-SECPEP	A375_MHC_IP_R2	2	539.645751953125	2	539.246003	1076.47745	-0.82628	-0.00044557	0.19627	0.00010584	-0.63001	-0.00033973	539.2460118844041	27.207	0.56064	27.885	27.69	28.251	0.67857					28	10	4	0	0	0	0.11887	1	9284	9284		71.708	35.581	1	12929000			64315	5675	46898	47266	62670	62670					-0.057726185583760525
YSSVRTEAL	9	Unmodified	_YSSVRTEAL_					0	0	0		nc|ENSG00000136813|Q5VYK3|ECPAS;ENSG00000136813|ENST00000684092|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-SECPEP	A375_MHC_IP_R1	1	513.6668090820312	2	513.266739	1024.51892	-0.72978	-0.00037457	1.2015	0.00061671	0.47176	0.00024214	513.267106078404	32.61	0.50369	32.61	32.282	32.785	0					17	9	2	0	0	0	0.33896	1	10555	10555		47.594	7.6447	1	6441600			64316	4820	46899	47267	62671	62671					0.007645622009476938
YSSVRTEAL	9	Unmodified	_YSSVRTEAL_					0	0	0		nc|ENSG00000136813|Q5VYK3|ECPAS;ENSG00000136813|ENST00000684092|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-MATCH	A375_MHC_IP_R2	2		2	513.266739	1024.51892	-0.76998	-0.00039521	1.0643	0.00054626	0.2943	0.00015106	513.2672713351698	31.871	0.55825	32.607	32.35	32.909	0.73692	-0.0010899	-2.3364E-05	NaN	61.602	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5325000			64317	4820	46899	47267							0.007645622009476938
YSSWLEQL	8	Unmodified	_YSSWLEQL_					0	0	0			REV__ENST00000423894.5_1_3:28283112-28361002:+|nuORF	REV__ENST00000423894.5_1_3:28283112-28361002:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	513.7030029296875	2	513.250557	1024.48656	-0.43251	-0.00022198	-0.031767	-1.6304E-05	-0.46427	-0.00023829	513.2505056761959	101.83	1.2137	101.83	101.24	102.45	0					34	23	2	0	0	0	0.71451	1	37299	37299		30.225	3.3412	1	1521800	+		64318	24617	46900	47268	62672	62672					-0.024702252020460946
YSTCMSPEVC	10	Unmodified	_YSTCMSPEVC_					0	0	0		OR5P3|p.G139E|1|0.45|ENSG00000182334|chr11:7825557-7825557|C/T|missense_variant	OR5P3|p.G139E|1|0.45|ENSG00000182334|chr11:7825557-7825557|C/T|missense_variant	OR5P3|p.G139E|1|0.45|ENSG00000182334|chr11:7825557-7825557|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	560.1228637695312	2	560.211403	1118.40825	-0.62133	-0.00034808	-0.14442	-8.0905E-05	-0.76575	-0.00042898	560.712733365811	53.1	0.40527	53.1	52.946	53.352	0					10	7	2	0	0	0	0.9269	1	19001	19001		6.7232	3.1267	1	965960			64319	15093	46901	47269	62673	62673					-0.1462148516545767
YSTIRKQEY	9	Unmodified	_YSTIRKQEY_					0	0	0		nc|ENSG00000138623|O75326-2|SEMA7A;ENSG00000138623|ENST00000261918|SEMA7A	nc|ENSG00000138623|O75326-2|SEMA7A	nc|ENSG00000138623|O75326-2|SEMA7A	MULTI-SECPEP	A375_MHC_IP_R1	1	396.94024658203125	3	396.540022	1186.59824	-0.22745	-9.0192E-05	0.4717	0.00018705	0.24425	9.6854E-05	396.54020803841	19.467	0.4069	19.467	19.318	19.725	0					12	7	2	0	0	0	0.56537	1	4855	4855		27.223	18.247	1	7600100			64320	5011	46902	47270	62674	62674					0.012402091550939076
YSTIRPYL	8	Unmodified	_YSTIRPYL_					0	0	0		ENSG00000052749|ENST00000370992|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;nc|ENSG00000052749|Q5JTH9-2|RRP12;ENST00000479481.5_1_10:99131673-99132940:-|nuORF	ENSG00000052749|ENST00000370992|RRP12	ENSG00000052749|ENST00000370992|RRP12	MULTI-MSMS	A375_MHC_IP_R1	1	507.1763916015625	2	506.776742	1011.53893	-0.40459	-0.00020504	-0.21521	-0.00010906	-0.6198	-0.0003141	506.77657003572085	60.746	0.66164	60.746	60.464	61.126	0					30	12	3	0	0	0	0.061402	1	21843	21843		136.33	68.99	1	32442000			64321	1240	46903	47271	62675	62675					0.03362357931564475
YSTIRPYL	8	Unmodified	_YSTIRPYL_					0	0	0		ENSG00000052749|ENST00000370992|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;nc|ENSG00000052749|Q5JTH9-2|RRP12;ENST00000479481.5_1_10:99131673-99132940:-|nuORF	ENSG00000052749|ENST00000370992|RRP12	ENSG00000052749|ENST00000370992|RRP12	MULTI-MSMS	A375_MHC_IP_R2	2	506.6952209472656	2	506.776742	1011.53893	-1.0928	-0.00055381	0.18096	9.1705E-05	-0.91184	-0.0004621	506.7768029529556	59.879	0.75956	60.627	60.249	61.008	0.74714					45	14	5	0	0	0	0.047217	1	22615	22615		123.45	68.677	1	30538000			64322	1240	46903	47271	62676	62676					0.03362357931564475
YSTPHAFTF	9	Unmodified	_YSTPHAFTF_					0	0	0		ENSG00000132155|ENST00000251849|RAF1;nc|ENSG00000132155|P04049-2|RAF1;ENST00000491290.1_1_3:12641875-12650299:-|nuORF	ENSG00000132155|ENST00000251849|RAF1	ENSG00000132155|ENST00000251849|RAF1	MULTI-MSMS	A375_MHC_IP_R2	2	535.66455078125	2	535.750724	1069.4869	-1.1123	-0.00059594	0.14603	7.8236E-05	-0.96631	-0.0005177	535.7507567606492	71.411	0.60751	72.145	71.908	72.516	0.73421					36	11	4	0	0	0	0.27715	1	27040	27040		32.305	16.458	1	10510000			64323	4376	46904	47272	62677	62677					-0.045068054822195336
YSTQRTLAAM	10	Unmodified	_YSTQRTLAAM_					0	0	0			REV__ENST00000263640.7_1_2:158593781-158593970:-|nuORF	REV__ENST00000263640.7_1_2:158593781-158593970:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	570.6292724609375	2	571.287148	1140.55974	-0.523	-0.00029879	0.40576	0.0002318	-0.11725	-6.6982E-05	571.7900917367041	71.974	1.0131	72.708	72.314	73.327	0.73421					29	19	2	0	0	0	0.78945	1	27444	27444		19.257	0	1	2200300	+		64324	23227	46905	47273	62678	62678					-0.004914197510970553
YSTQYFDTN	9	Unmodified	_YSTQYFDTN_					0	0	0			REV__ENST00000522203.5_1_5:143545115-143549519:-|nuORF	REV__ENST00000522203.5_1_5:143545115-143549519:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	570.1377563476562	2	569.738011	1137.46147	-0.19257	-0.00010972	-0.16673	-9.4991E-05	-0.3593	-0.00020471	569.7378219710816	44.139	0.56144	44.139	43.859	44.42	0					17	10	2	0	0	0	0.094655	1	15398	15398		51.63	24.001	1	4111200	+		64325	19494	46906	47274	62679	62679					-0.10176324795293112
YSTQYFDTN	9	Unmodified	_YSTQYFDTN_					0	0	0			REV__ENST00000522203.5_1_5:143545115-143549519:-|nuORF	REV__ENST00000522203.5_1_5:143545115-143549519:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	570.1375732421875	2	569.738011	1137.46147	-0.15601	-8.8885E-05	-0.53169	-0.00030292	-0.6877	-0.00039181	569.7377836021024	43.517	0.75867	44.289	43.977	44.735	0.7724					26	14	3	0	0	0	0.13845	1	16188	16188		43.772	25.626	1	3037300	+		64326	19494	46906	47274	62680	62680					-0.10176324795293112
YSTRIRKTLDP	11	Unmodified	_YSTRIRKTLDP_					0	0	0			REV__nc|ENSG00000145087|Q9Y2K9|STXBP5L	REV__nc|ENSG00000145087|Q9Y2K9|STXBP5L	MULTI-SECPEP	A375_MHC_IP_R1	1	450.9896545410156	3	450.589376	1348.7463	-0.25017	-0.00011272	0.85498	0.00038524	0.60481	0.00027252	450.5897535399036	32.123	0.36047	32.123	31.921	32.282	0					14	6	3	0	0	0	0.9907	1	10383	10383		3.8459	1.9395	1	2317000	+		64327	27272	46907	47275	62681	62681					0.0858752040892341
YSTRIRKTLDP	11	Unmodified	_YSTRIRKTLDP_					0	0	0			REV__nc|ENSG00000145087|Q9Y2K9|STXBP5L	REV__nc|ENSG00000145087|Q9Y2K9|STXBP5L	MULTI-MATCH	A375_MHC_IP_R2	2		3	450.589376	1348.7463	-0.32148	-0.00014486	0.918	0.00041364	0.59652	0.00026879	450.5898063880235	31.179	0.30677	31.897	31.77	32.077	0.71857	-0.1129	6.1946E-05	NaN	3.8459	13	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3060900	+		64328	27272	46907	47275							0.0858752040892341
YSTSRLITF	9	Unmodified	_YSTSRLITF_					0	0	0		ENST00000609350.1_1_2:128644229-128644535:+|nuORF;ENST00000439559.2_1_10:89102840-89103146:+|nuORF;ENST00000605920.1_1_10:81586793-81587114:+|nuORF	ENST00000609350.1_1_2:128644229-128644535:+|nuORF	ENST00000609350.1_1_2:128644229-128644535:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	544.6911010742188	2	544.292756	1086.57096	-0.564	-0.00030698	-3.0128	-0.0016398	-3.5768	-0.0019468	544.2906081461771	74.819	1.4202	74.819	73.64	75.06	0					53	27	3	0	0	0	0.12938	1	27222	27222		87.258	43.4	1	10846000			64329	11962	46908	47276	62682	62682					0.031137256146848813
YSTSRLITF	9	Unmodified	_YSTSRLITF_					0	0	0		ENST00000609350.1_1_2:128644229-128644535:+|nuORF;ENST00000439559.2_1_10:89102840-89103146:+|nuORF;ENST00000605920.1_1_10:81586793-81587114:+|nuORF	ENST00000609350.1_1_2:128644229-128644535:+|nuORF	ENST00000609350.1_1_2:128644229-128644535:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	544.692138671875	2	544.292756	1086.57096	-0.79704	-0.00043382	-2.3921	-0.001302	-3.1891	-0.0017358	544.2903444930391	73.92	1.5774	74.658	73.381	74.958	0.73751					50	30	4	0	0	0	0.091583	1	28048	28048		96.936	44.667	1	12073000			64330	11962	46908	47276	62683	62683					0.031137256146848813
YSTSSKYV	8	Unmodified	_YSTSSKYV_					0	0	0			REV__CFAP221|p.H593Y|1|0.37|ENSG00000163075|chr2:119630615-119630615|C/T|missense_variant	REV__CFAP221|p.H593Y|1|0.37|ENSG00000163075|chr2:119630615-119630615|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	937.86669921875	1	934.451639	933.444362	-0.32784	-0.00030636	0.85094	0.00079516	0.52309	0.00048881	934.4517508509842	81.458	1.5742	82.201	81.671	83.246	0.74293					81	30	5	0	0	0	0.72008	1	30938	30938		28.487	0	1	76241000	+		64331	15643	46909	47277	62684	62684					-0.02502200610433647
YSVIRGEEF	9	Unmodified	_YSVIRGEEF_					0	0	0		nc|ENSG00000156535|Q6YHK3-2|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;CD109|p.P755L|1|0.36|ENSG00000156535|chr6:73785404-73785404|C/T|missense_variant	nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	MULTI-SECPEP	A375_MHC_IP_R1	1	550.674560546875	2	550.274564	1098.53457	-0.52331	-0.00028796	1.0862	0.00059773	0.56293	0.00030976	550.2748672575483	57.445	0.96728	57.445	56.855	57.822	0					34	18	3	0	0	0	0.053555	1	20593	20593		90.135	26.174	1	8389200			64332	6199	46910	47278	62685	62685					-0.010751512820206699
YSVIRGEEF	9	Unmodified	_YSVIRGEEF_					0	0	0		nc|ENSG00000156535|Q6YHK3-2|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;CD109|p.P755L|1|0.36|ENSG00000156535|chr6:73785404-73785404|C/T|missense_variant	nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-2|CD109	MULTI-SECPEP	A375_MHC_IP_R2	2	550.6743774414062	2	550.274564	1098.53457	-1.1987	-0.0006596	1.6135	0.00088786	0.4148	0.00022826	550.2758226429465	56.674	0.81453	57.424	56.898	57.712	0.75015					28	15	3	0	0	0	0.030244	1	21412	21412		107.1	50.923	1	6906000			64333	6199	46910	47278	62686	62686					-0.010751512820206699
YSVQTRATFL	10	Unmodified	_YSVQTRATFL_					0	0	0			REV__ENST00000585111.1_1_17:62503346-62503505:-|nuORF	REV__ENST00000585111.1_1_17:62503346-62503505:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	396.5961608886719	3	395.880267	1184.61897	-0.29809	-0.00011801	0.49885	0.00019749	0.20077	7.9479E-05	395.8803934589919	26.887	0.81786	27.547	27.313	28.131	0.65992					38	15	3	0	0	0	0.70312	1	9313	9313		10.899	0	1	23044000	+		64334	26375	46911	47279	62687	62687					0.034047995347464166
YSVREVTLA	9	Unmodified	_YSVREVTLA_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;nc|ENSG00000198198|Q5T011-4|SZT2;SZT2|p.T1044Ifs*3|1|0.17|ENSG00000198198|chr1:43426802-43426802|C/-|frameshift_variant	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	A375_MHC_IP_R1	1	520.6866455078125	2	519.284931	1036.55531	-0.44879	-0.00023305	0.033938	1.7624E-05	-0.41485	-0.00021543	519.2849575010102	54.602	0.81186	54.602	54.163	54.975	0					39	15	4	0	0	0	0.72985	1	19428	19428		4.3292	0	1	18980000			64335	9241	46912	47280	62688	62688					0.03849439097666618
YSYAGGRGSY	10	Unmodified	_YSYAGGRGSY_					0	0	0		nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978|HNRNPK	nc|ENSG00000165119|P61978|HNRNPK	MULTI-MSMS	A375_MHC_IP_R2	2	541.1402587890625	2	540.740888	1079.46722	-1.2785	-0.00069133	0.24821	0.00013422	-1.0303	-0.00055712	540.7409951737541	25.967	0.30516	26.627	26.5	26.805	0.65992					9	5	2	0	0	0	0.41205	1	8766	8766		33.445	1.1394	1	2652000			64336	6916	46913	47281	62689	62689					-0.06933181492922813
YSYDWSSL	8	Unmodified	_YSYDWSSL_					0	0	0			REV__ENST00000497010.1_1_1:45435697-45452248:-|nuORF	REV__ENST00000497010.1_1_1:45435697-45452248:-|nuORF	MSMS	A375_MHC_IP_R1	1	510.6205139160156	2	510.71909	1019.42363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.296	1	65.296	64.796	65.796	0								0	0	0	0.16876	1	23637	23637		14.582	2.0501	1		+		64337	25465	46914	47282	62690	62690					-0.08530790990096193
YSYFLSHR	8	Unmodified	_YSYFLSHR_					0	0	0			REV__AUTS2|p.H581Y|1|0.31|ENSG00000158321|chr7:70771555-70771555|C/T|missense_variant	REV__AUTS2|p.H581Y|1|0.31|ENSG00000158321|chr7:70771555-70771555|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	358.91351318359375	3	358.178536	1071.51378	-0.11114	-3.9808E-05	1.8788	0.00067294	1.7676	0.00063313	358.17920399880387	19.295	0.24093	19.295	19.23	19.471	0					12	5	4	0	0	0	0.972	1	4818	4818		8.1555	5.8728	1	6881900	+		64338	15489	46915	47283	62691	62691					-0.019116968710022775
YSYLIGRL	8	Unmodified	_YSYLIGRL_					0	0	0		CDYL2|p.D312E|1|0.86|ENSG00000166446|chr16:80620834-80620834|A/T|missense_variant;ENSG00000166446|ENST00000570137|CDYL2	CDYL2|p.D312E|1|0.86|ENSG00000166446|chr16:80620834-80620834|A/T|missense_variant	CDYL2|p.D312E|1|0.86|ENSG00000166446|chr16:80620834-80620834|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	493.1786804199219	2	492.779285	983.544017	-0.39452	-0.00019441	-0.23257	-0.00011461	-0.62709	-0.00030902	492.77915123197874	81.206	0.50693	81.206	80.897	81.404	0					24	9	3	0	0	0	0.17547	1	29667	29667		74.423	14.033	1	4164100			64339	357	46916	47284	62692	62692					0.051586617941893564
YSYLIGRL	8	Unmodified	_YSYLIGRL_					0	0	0		CDYL2|p.D312E|1|0.86|ENSG00000166446|chr16:80620834-80620834|A/T|missense_variant;ENSG00000166446|ENST00000570137|CDYL2	CDYL2|p.D312E|1|0.86|ENSG00000166446|chr16:80620834-80620834|A/T|missense_variant	CDYL2|p.D312E|1|0.86|ENSG00000166446|chr16:80620834-80620834|A/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	493.17852783203125	2	492.779285	983.544017	-0.51745	-0.00025499	-0.31107	-0.00015329	-0.82852	-0.00040828	492.7788310589703	80.285	0.65714	81.03	80.759	81.416	0.74473					27	12	3	0	0	0	0.69122	1	30467	30467		48.346	19.859	1	6153400			64340	357	46916	47284	62693	62693					0.051586617941893564
YSYLYDNK	8	Unmodified	_YSYLYDNK_					0	0	0		tr|U7SUC9|U7SUC9_FUSNUDUF3601domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01380PE=4SV=1	tr|U7SUC9|U7SUC9_FUSNUDUF3601domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01380PE=4SV=1	tr|U7SUC9|U7SUC9_FUSNUDUF3601domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01380PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	533.3417358398438	2	533.248015	1064.48148	-0.52242	-0.00027858	2.8835	0.0015376	2.3611	0.0012591	533.2480428860107	51.283	0.76129	51.283	51.017	51.778	0					22	14	2	0	0	0	0.97021	1	18141	18141		6.7232	0	1	1386100			64341	29758	46917	47285	62694	62694					-0.04818529064687027
YSYPARRW	8	Unmodified	_YSYPARRW_					0	0	0		ENST00000524666.5_1_11:65108438-65113200:+|nuORF;ENST00000444314.6_1_11:65101357-65109054:+|nuORF;nc|ENSG00000133884|Q92785-2|DPF2;ENSG00000133884|ENST00000528416|DPF2	ENST00000524666.5_1_11:65108438-65113200:+|nuORF	ENST00000524666.5_1_11:65108438-65113200:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	367.63641357421875	3	366.854164	1097.54066	0.30344	0.00011132	0.067282	2.4683E-05	0.37072	0.000136	366.854207624863	31.726	0.45662	31.726	31.465	31.921	0					20	8	3	0	0	0	0.8824	1	10156	10156		24.021	24.021	1	13557000			64342	4536	46918	47286	62695	62695					-0.004205882598171229
YSYPARRW	8	Unmodified	_YSYPARRW_					0	0	0		ENST00000524666.5_1_11:65108438-65113200:+|nuORF;ENST00000444314.6_1_11:65101357-65109054:+|nuORF;nc|ENSG00000133884|Q92785-2|DPF2;ENSG00000133884|ENST00000528416|DPF2	ENST00000524666.5_1_11:65108438-65113200:+|nuORF	ENST00000524666.5_1_11:65108438-65113200:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	367.2542419433594	3	366.854164	1097.54066	0.10251	3.7607E-05	-0.09728	-3.5688E-05	0.0052322	1.9195E-06	366.8541557161575	30.965	0.45461	31.683	31.417	31.872	0.71857					27	8	4	0	0	0	0.92636	1	10927	10927		18.146	18.146	1	11463000			64343	4536	46918	47286	62696	62696					-0.004205882598171229
YSYPIATL	8	Unmodified	_YSYPIATL_					0	0	0		nc|ENSG00000106477|Q9BYV8-2|CEP41;SEMA3E-CEP41|1|fusion;ENSG00000106477|ENST00000223208|CEP41;SEMA3E-CEP41|2|fusion;nc|ENSG00000106477|Q9BYV8-5|CEP41	nc|ENSG00000106477|Q9BYV8-2|CEP41	nc|ENSG00000106477|Q9BYV8-2|CEP41	MULTI-MSMS	A375_MHC_IP_R2	2	927.881591796875	1	927.482211	926.474934	-0.31879	-0.00029567	0.35157	0.00032608	0.03278	3.0403E-05	927.4822157090745	98.091	0.50905	98.851	98.538	99.047	0.75977					16	9	2	0	0	0	0.28202	1	37263	37263		60.39	19.941	1	3190000			64344	2693	46919	47287	62697	62697					0.008755777746159765
YSYPIATL	8	Unmodified	_YSYPIATL_					0	0	0		nc|ENSG00000106477|Q9BYV8-2|CEP41;SEMA3E-CEP41|1|fusion;ENSG00000106477|ENST00000223208|CEP41;SEMA3E-CEP41|2|fusion;nc|ENSG00000106477|Q9BYV8-5|CEP41	nc|ENSG00000106477|Q9BYV8-2|CEP41	nc|ENSG00000106477|Q9BYV8-2|CEP41	MULTI-MATCH	A375_MHC_IP_R1	1		1	927.482211	926.474934	-0.044881	-4.1626E-05	-0.25716	-0.00023851	-0.30204	-0.00028013	927.4819943172936	98.889	0.45936	98.889	98.607	99.067	0	0.018996	-0.0002416	NaN	60.39	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3980300			64345	2693	46919	47287							0.008755777746159765
YSYPTGNHTY	10	Unmodified	_YSYPTGNHTY_					0	0	0		nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;nc|ENSG00000089159|P49023-3|PXN;ENSG00000089159|ENST00000637617|PXN	nc|ENSG00000089159|P49023-2|PXN	nc|ENSG00000089159|P49023-2|PXN	MULTI-MSMS	A375_MHC_IP_R1	1	602.1591186523438	2	601.759278	1201.504	-0.38494	-0.00023164	0.0076461	4.6011E-06	-0.3773	-0.00022704	601.7592394436484	33.368	0.50819	33.368	33.14	33.648	0					34	9	5	0	0	0	0.011522	1	10863	10863		117.84	43.638	1	40700000			64346	1917	46920	47288	62698	62698					-0.08868929667050907
YSYPTGNHTY	10	Unmodified	_YSYPTGNHTY_					0	0	0		nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;nc|ENSG00000089159|P49023-3|PXN;ENSG00000089159|ENST00000637617|PXN	nc|ENSG00000089159|P49023-2|PXN	nc|ENSG00000089159|P49023-2|PXN	MULTI-MSMS	A375_MHC_IP_R2	2	602.1592407226562	2	601.759278	1201.504	-0.54913	-0.00033044	0.047742	2.8729E-05	-0.50139	-0.00030171	601.7592881648346	32.746	0.6112	33.483	33.213	33.825	0.73692					36	11	4	0	0	0	0.0089867	1	11649	11649		107.56	54.159	1	31154000			64347	1917	46920	47288	62699	62699					-0.08868929667050907
YSYTSATL	8	Unmodified	_YSYTSATL_					0	0	0			REV__ENST00000480946.6_1_8:144659238-144660323:-|nuORF	REV__ENST00000480946.6_1_8:144659238-144660323:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	904.8259887695312	1	905.42509	904.417813	-0.71834	-0.0006504	0.54149	0.00049028	-0.17685	-0.00016012	905.4256774604378	58.399	0.56181	59.148	58.929	59.491	0.74894					15	10	2	0	0	0	0.95423	1	22167	22167		18.135	7.3111	1	2503900	+		64348	19609	46921	47289	62700	62700					-0.03821889501750775
YSYTSATL	8	Unmodified	_YSYTSATL_					0	0	0			REV__ENST00000480946.6_1_8:144659238-144660323:-|nuORF	REV__ENST00000480946.6_1_8:144659238-144660323:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	905.42509	904.417813	-0.17827	-0.00016141	0.47802	0.00043281	0.29975	0.0002714	905.4254362921002	59.15	0.51004	59.15	58.887	59.397	0	0.00065215	-4.1237E-05	NaN	18.135	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2083700	+		64349	19609	46921	47289							-0.03821889501750775
YSYVTEEL	8	Unmodified	_YSYVTEEL_					0	0	0		ENSG00000139684|ENST00000378720|ESD	ENSG00000139684|ENST00000378720|ESD	ENSG00000139684|ENST00000378720|ESD	MULTI-SECPEP	A375_MHC_IP_R1	1	1003.2172241210938	1	1003.46187	1002.45459	0.12067	0.00012109	-0.41472	-0.00041615	-0.29405	-0.00029507	1003.4614518059468	76.955	0.66267	76.955	76.572	77.235	0					18	12	2	0	0	0	0.19796	1	28122	28122		92.822	41.967	1	4611000			64350	5101	46922	47290	62701	62701					-0.046536376758581355
YSYVTEEL	8	Unmodified	_YSYVTEEL_					0	0	0		ENSG00000139684|ENST00000378720|ESD	ENSG00000139684|ENST00000378720|ESD	ENSG00000139684|ENST00000378720|ESD	MULTI-MATCH	A375_MHC_IP_R2	2		1	1003.46187	1002.45459	0.025327	2.5415E-05	-0.2602	-0.0002611	-0.23487	-0.00023568	1003.4615692365517	76.279	0.45712	77.019	76.742	77.199	0.74052	0.032092	9.7595E-05	NaN	92.822	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5491500			64351	5101	46922	47290							-0.046536376758581355
YTADGKEVLEY	11	Unmodified	_YTADGKEVLEY_					0	0	0		ENSG00000196655|ENST00000533632|TRAPPC4;ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENST00000531290.5_1_11:118889791-118894106:+|nuORF	ENSG00000196655|ENST00000533632|TRAPPC4	ENSG00000196655|ENST00000533632|TRAPPC4	MULTI-MSMS	A375_MHC_IP_R1	1	644.7077026367188	2	644.3088	1286.60305	-0.29954	-0.000193	-0.12179	-7.8469E-05	-0.42133	-0.00027146	644.308663197637	51.762	1.7779	51.762	51.119	52.897	0					76	34	4	0	0	0	0.00022827	1	18328	18328		128.87	79.315	1	93374000			64352	9070	46923	47291	62702	62702					-0.02878951492766646
YTADGKEVLEY	11	Unmodified	_YTADGKEVLEY_					0	0	0		ENSG00000196655|ENST00000533632|TRAPPC4;ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENST00000531290.5_1_11:118889791-118894106:+|nuORF	ENSG00000196655|ENST00000533632|TRAPPC4	ENSG00000196655|ENST00000533632|TRAPPC4	MULTI-MSMS	A375_MHC_IP_R2	2	644.7073364257812	2	644.3088	1286.60305	-0.84767	-0.00054616	-0.26093	-0.00016812	-1.1086	-0.00071428	644.3084326537279	51.188	2.6397	51.94	50.444	53.083	0.75225					88	51	5	0	0	0	0.00059444	1	19207	19207		109.15	63.406	1	105280000			64353	9070	46923	47291	62703	62703					-0.02878951492766646
YTAEHANPPVV	11	Unmodified	_YTAEHANPPVV_					0	0	0			REV__ENST00000426191.2_1_11:73363993-73372644:+|nuORF	REV__ENST00000426191.2_1_11:73363993-73372644:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	599.6980590820312	2	599.29857	1196.58259	-0.38594	-0.00023129	-0.26586	-0.00015933	-0.6518	-0.00039062	599.2984891794946	74.795	0.76031	74.795	74.502	75.262	0					22	14	2	0	0	0	0.43152	1	27279	27279		36.506	8.8774	1	2608700	+		64354	16265	46924	47292	62704	62704					-0.00784077361981872
YTAEHANPPVV	11	Unmodified	_YTAEHANPPVV_					0	0	0			REV__ENST00000426191.2_1_11:73363993-73372644:+|nuORF	REV__ENST00000426191.2_1_11:73363993-73372644:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	599.6988525390625	2	599.29857	1196.58259	-0.24812	-0.0001487	0.83869	0.00050262	0.59057	0.00035393	599.299115470313	82.094	1.0652	82.094	81.707	82.772	0					37	19	3	0	0	0	0.51633	1	29989	29989		29.841	5.82	1	13432000	+		64355	16265	46924	47292	62705	62705					-0.00784077361981872
YTAEHANPPVV	11	Unmodified	_YTAEHANPPVV_					0	0	0			REV__ENST00000426191.2_1_11:73363993-73372644:+|nuORF	REV__ENST00000426191.2_1_11:73363993-73372644:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	599.6986694335938	2	599.29857	1196.58259	-0.62003	-0.00037158	1.0834	0.00064926	0.46333	0.00027768	599.2993265102725	81.33	0.75942	82.074	81.724	82.483	0.74404					32	14	3	0	0	0	0.4173	1	30841	30841		51.63	17.527	1	12859000	+		64356	16265	46924	47292	62706	62706					-0.00784077361981872
YTAPQPGKY	9	Unmodified	_YTAPQPGKY_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	A375_MHC_IP_R1	1	513.1583862304688	2	512.758549	1023.50255	-0.95645	-0.00049043	0.69671	0.00035724	-0.25974	-0.00013318	512.7591057921761	29.282	0.40593	29.282	29.047	29.453	0					15	7	3	0	0	0	0.082375	1	9150	9150		53.833	19.431	1	6585800			64357	9093;12651	46925	47293	62707	62707					-0.008265189651410765
YTAPWHMV	8	Unmodified	_YTAPWHMV_					0	0	0		ENSG00000126106|ENST00000372237|TMEM53	ENSG00000126106|ENST00000372237|TMEM53	ENSG00000126106|ENST00000372237|TMEM53	MULTI-SECPEP	A375_MHC_IP_R2	2	502.60546875	2	502.736563	1003.45857	-0.96854	-0.00048692	3.8792	0.0019502	2.9107	0.0014633	502.73890005721415	33.29	0.91384	34.042	33.789	34.702	0.75225					21	17	2	0	0	0	0.93416	1	11923	11923		5.2307	3.3864	1	1108900			64358	4025	46926	47294	62708	62708					-0.043018266631293045
YTAQPTQGY	9	Unmodified	_YTAQPTQGY_					0	0	0		ENST00000485037.5_1_22:29664325-29670342:+|nuORF;ENST00000483415.5_1_22:29664325-29684776:+|nuORF;nc|ENSG00000182944|Q01844-4|EWSR1;nc|ENSG00000182944|Q01844-2|EWSR1;nc|ENSG00000182944|Q01844-6|EWSR1;nc|ENSG00000182944|Q01844-3|EWSR1;ENSG00000182944|ENST00000397938|EWSR1;nc|ENSG00000182944|Q01844-5|EWSR1	ENST00000485037.5_1_22:29664325-29670342:+|nuORF	ENST00000485037.5_1_22:29664325-29670342:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	515.13720703125	2	514.737814	1027.46108	-0.50685	-0.00026089	-0.35417	-0.0001823	-0.86101	-0.0004432	514.7375639405342	33.419	0.50732	33.419	33.241	33.748	0					16	9	2	0	0	0	0.010853	1	10897	10897		140.63	85.86	1	7193100			64359	8449	46927	47295	62709	62709					-0.05155699724468832
YTAQPTQGY	9	Unmodified	_YTAQPTQGY_					0	0	0		ENST00000485037.5_1_22:29664325-29670342:+|nuORF;ENST00000483415.5_1_22:29664325-29684776:+|nuORF;nc|ENSG00000182944|Q01844-4|EWSR1;nc|ENSG00000182944|Q01844-2|EWSR1;nc|ENSG00000182944|Q01844-6|EWSR1;nc|ENSG00000182944|Q01844-3|EWSR1;ENSG00000182944|ENST00000397938|EWSR1;nc|ENSG00000182944|Q01844-5|EWSR1	ENST00000485037.5_1_22:29664325-29670342:+|nuORF	ENST00000485037.5_1_22:29664325-29670342:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	516.169189453125	2	514.737814	1027.46108	-0.8374	-0.00043104	-0.39873	-0.00020524	-1.2361	-0.00063628	514.7377096941258	32.842	0.55956	33.579	33.367	33.926	0.73691					28	10	4	0	0	0	0.51106	1	11726	11726		19.257	0	1	6734700			64360	8449	46927	47295	62710	62710					-0.05155699724468832
YTAQTSQPTNY	11	Unmodified	_YTAQTSQPTNY_					0	0	0		ENST00000481203.1_1_3:100463567-100467372:+|nuORF;nc|ENSG00000114354|Q92734-2|TFG;ENSG00000114354|ENST00000240851|TFG	ENST00000481203.1_1_3:100463567-100467372:+|nuORF	ENST00000481203.1_1_3:100463567-100467372:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	637.6881103515625	2	637.288399	1272.56225	-0.94488	-0.00060216	0.24229	0.00015441	-0.70259	-0.00044775	637.2884898107465	32.641	0.45309	32.641	32.434	32.887	0					23	8	4	0	0	0	0.00017372	1	10556	10556		164.85	121.08	1	9540800			64361	3214	46928	47296	62711	62711					-0.06313292812410509
YTAQTSQPTNY	11	Unmodified	_YTAQTSQPTNY_					0	0	0		ENST00000481203.1_1_3:100463567-100467372:+|nuORF;nc|ENSG00000114354|Q92734-2|TFG;ENSG00000114354|ENST00000240851|TFG	ENST00000481203.1_1_3:100463567-100467372:+|nuORF	ENST00000481203.1_1_3:100463567-100467372:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	637.6882934570312	2	637.288399	1272.56225	-0.78926	-0.00050299	0.21972	0.00014003	-0.56954	-0.00036296	637.288543866683	32.054	0.45641	32.791	32.605	33.061	0.73691					19	8	3	0	0	0	0.00029328	1	11371	11371		158.08	114.09	1	8973400			64362	3214	46928	47296	62712	62712					-0.06313292812410509
YTARVYNMFWV	11	Unmodified	_YTARVYNMFWV_					0	0	0		ENSG00000173208|ENST00000308666|ABCD2	ENSG00000173208|ENST00000308666|ABCD2	ENSG00000173208|ENST00000308666|ABCD2	MULTI-SECPEP	A375_MHC_IP_R2	2	483.1579895019531	3	483.904307	1448.69109	-0.65228	-0.00031564	-0.53112	-0.00025701	-1.1834	-0.00057265	484.23749740009134	66.992	0.30479	67.729	67.546	67.85	0.73631					6	5	2	0	0	0	0.99411	1	25425	25425		6.6235	1.9075	1	1370200			64363	7775	46929	47297	62713	62713					-0.01530609383189585
YTASRQHLYV	10	Unmodified	_YTASRQHLYV_					0	0	0		ENST00000430989.1_1_2:84670392-84686354:-|nuORF;SUCLG1|p.E241Nfs*16|1|0.24|ENSG00000163541|chr2:84431611-84431612|TC/-|frameshift_variant;ENSG00000163541|ENST00000393868|SUCLG1	ENST00000430989.1_1_2:84670392-84686354:-|nuORF	ENST00000430989.1_1_2:84670392-84686354:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	619.71923828125	2	619.319837	1236.62512	-0.39058	-0.00024189	-0.21636	-0.000134	-0.60694	-0.00037589	619.3196214750035	74.735	0.7607	74.735	74.4	75.16	0					38	14	4	0	0	0	0.50967	1	27186	27186		27.629	3.6082	1	15101000			64364	6682	46930	47298	62714	62714					0.01627317766269698
YTATYYIY	8	Unmodified	_YTATYYIY_					0	0	0		ENSG00000078098|ENST00000188790|FAP;ENST00000480838.1_1_2:163066458-163099837:-|nuORF	ENSG00000078098|ENST00000188790|FAP	ENSG00000078098|ENST00000188790|FAP	MULTI-SECPEP	A375_MHC_IP_R2	2	529.9620361328125	2	529.247483	1056.48041	-0.6597	-0.00034915	2.2914	0.0012127	1.6317	0.00086358	529.250409216556	48.834	0.45897	49.591	49.282	49.741	0.75737					11	8	2	0	0	0	0.97144	1	18297	18297		14.582	10.252	1	1285200			64365	1666	46931	47299	62715	62715					-0.045567434335680446
YTCLFITCF	9	Unmodified	_YTCLFITCF_					0	0	0			REV__TMEM178A|p.S224F|1|0.09|ENSG00000152154|chr2:39717028-39717028|C/T|missense_variant	REV__TMEM178A|p.S224F|1|0.09|ENSG00000152154|chr2:39717028-39717028|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	555.1793212890625	2	555.753564	1109.49257	-0.59644	-0.00033147	-2.1103	-0.0011728	-2.7067	-0.0015043	556.2548331153598	42.057	0.30273	42.057	41.88	42.183	0					8	5	2	0	0	0	0.71541	1	14506	14506		16.942	6.7589	1	968960	+		64366	28131	46932	47300	62716	62716					-0.0577916628640196
YTCPPEPSV	9	Unmodified	_YTCPPEPSV_					0	0	0			REV__nc|ENSG00000198719|O00548-2|DLL1	REV__nc|ENSG00000198719|O00548-2|DLL1	MSMS	A375_MHC_IP_R2	2	496.692138671875	2	496.723318	991.432083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.255	1	66.992	66.492	67.492	0.73692								0	0	0	0.13141	1	25109	25109		32.305	5.4218	1		+		64367	22402	46933	47301	62717	62717					-0.06397560345112652
YTCSSELSPP	10	Unmodified	_YTCSSELSPP_					0	0	0			REV__ENST00000565912.1_1_16:57411753-57412206:+|nuORF	REV__ENST00000565912.1_1_16:57411753-57412206:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	542.695068359375	2	542.23679	1082.45903	-0.74715	-0.00040513	-3.0865	-0.0016736	-3.8337	-0.0020788	542.7343717273095	89.229	0.2998	89.96	89.886	90.186	0.7318					6	5	2	0	0	0	0.70496	1	33936	33936		10.074	0	1	861440	+		64368	26238	46934	47302	62718	62718					-0.07890496524601076
YTDAAPQTPLH	11	Unmodified	_YTDAAPQTPLH_					0	0	0			REV__nc|ENSG00000183337|Q6W2J9-3|BCOR	REV__nc|ENSG00000183337|Q6W2J9-3|BCOR	MULTI-SECPEP	A375_MHC_IP_R2	2	606.687744140625	2	607.296027	1212.5775	-0.50073	-0.00030409	-0.14555	-8.839E-05	-0.64628	-0.00039248	607.2958028979605	81.298	0.75942	82.043	81.724	82.484	0.74474					32	14	3	0	0	0	0.27744	1	30896	30896		57.722	15.882	1	9149600	+		64369	21750	46935	47303	62719	62719					-0.020283812245679655
YTDATPLRV	9	Unmodified	_YTDATPLRV_					0	0	0		ENSG00000185163|ENST00000397333|DDX51;ENST00000545991.1_1_12:132626393-132626546:-|nuORF;ENST00000546058.1_1_12:132626393-132626917:-|nuORF;ENST00000329073.8_1_12:132625785-132627411:-|nuORF	ENSG00000185163|ENST00000397333|DDX51	ENSG00000185163|ENST00000397333|DDX51	MULTI-MSMS	A375_MHC_IP_R1	1	518.23388671875	2	518.277106	1034.53966	-0.090013	-4.6652E-05	-0.37145	-0.00019252	-0.46147	-0.00023917	518.276892817082	48.704	0.85871	48.704	48.325	49.184	0					26	16	2	0	0	0	0.015356	1	17229	17229		89.401	57.095	1	26597000			64370	8648	46936	47304	62720	62720					0.023771525806068894
YTDATPLRV	9	Unmodified	_YTDATPLRV_					0	0	0		ENSG00000185163|ENST00000397333|DDX51;ENST00000545991.1_1_12:132626393-132626546:-|nuORF;ENST00000546058.1_1_12:132626393-132626917:-|nuORF;ENST00000329073.8_1_12:132625785-132627411:-|nuORF	ENSG00000185163|ENST00000397333|DDX51	ENSG00000185163|ENST00000397333|DDX51	MULTI-MSMS	A375_MHC_IP_R2	2	518.2335205078125	2	518.277106	1034.53966	-0.59749	-0.00030966	-0.3466	-0.00017963	-0.94408	-0.0004893	518.2769102317781	47.895	0.65737	48.656	48.326	48.984	0.76128					24	12	2	0	0	0	0.018261	1	17920	17920		85.642	39.942	1	27267000			64371	8648	46936	47304	62721	62721					0.023771525806068894
YTDDDFEKH	9	Unmodified	_YTDDDFEKH_					0	0	0			REV__nc|ENSG00000104368|P00750-4|PLAT	REV__nc|ENSG00000104368|P00750-4|PLAT	MULTI-MSMS	A375_MHC_IP_R2	2	585.64111328125	2	585.240918	1168.46728	-0.39689	-0.00023228	1.004	0.00058755	0.60706	0.00035527	585.742474498638	84.541	0.45384	85.277	85.018	85.472	0.73602					14	8	3	0	0	0	0.32092	1	32144	32144		29.082	5.2918	1	967540	+		64372	17319	46937	47305	62722	62722					-0.11021226283605756
YTDDDTPLEY	10	Unmodified	_YTDDDTPLEY_					0	0	0			REV__ENST00000456023.1_1_2:85824088-85824624:+|nuORF	REV__ENST00000456023.1_1_2:85824088-85824624:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	616.6534423828125	2	616.253691	1230.49283	-0.47108	-0.0002903	0.59096	0.00036418	0.11988	7.3875E-05	616.2536315404276	28.903	0.35306	28.903	28.694	29.047	0					9	6	2	0	0	0	0.24499	1	8996	8996		61.357	15.658	1	2230800	+		64373	20892	46938	47306	62723	62723					-0.11319796551811123
YTDDDTPLEY	10	Unmodified	_YTDDDTPLEY_					0	0	0			REV__ENST00000456023.1_1_2:85824088-85824624:+|nuORF	REV__ENST00000456023.1_1_2:85824088-85824624:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	616.6531982421875	2	616.253691	1230.49283	-1.3384	-0.0008248	3.3939	0.0020915	2.0555	0.0012667	616.2539771798073	29.481	0.55483	30.18	29.93	30.485	0.69872					32	10	4	0	0	0	0.2515	1	10291	10291		61.357	30.721	1	12073000	+		64374	20892	46938	47306	62724	62724					-0.11319796551811123
YTDDDTPLEY	10	Unmodified	_YTDDDTPLEY_					0	0	0			REV__ENST00000456023.1_1_2:85824088-85824624:+|nuORF	REV__ENST00000456023.1_1_2:85824088-85824624:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	616.253691	1230.49283	-1.3384	-0.0008248	3.3939	0.0020915	2.0555	0.0012667	616.2539771798073	29.481	0.55483	30.18	29.93	30.485	0.69872	0.069199	0.0017104	NaN	61.357	32	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12073000	+		64375	20892	46938	47306							-0.11319796551811123
YTDDEDDIY	9	Unmodified	_YTDDEDDIY_					0	0	0		ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	MSMS	A375_MHC_IP_R2	2	574.6504516601562	2	574.716941	1147.41933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.419	1	85.155	84.655	85.655	0.73601								0	0	0	0.15486	1	32090	32090		12.532	1.7076	1				64376	7662	46939	47307	62725	62725					-0.14848344994311446
YTDDFTDR	8	Unmodified	_YTDDFTDR_					0	0	0		nc|nan|Q9H3H3-1|C11orf68;nc|nan|Q9H3H3|C11orf68;ENSG00000175573|ENST00000438576|C11orf68	nc|nan|Q9H3H3-1|C11orf68	nc|nan|Q9H3H3-1|C11orf68	MULTI-SECPEP	A375_MHC_IP_R1	1	517.116943359375	2	516.717079	1031.4196	-0.69516	-0.0003592	0.063497	3.281E-05	-0.63166	-0.00032639	516.716942643294	27.073	0.40301	27.073	26.928	27.331	0					13	7	2	0	0	0	0.97144	1	8210	8210		9.3474	5.0182	1	3646100			64377	7970	46940	47308	62726	62726					-0.09484880483819325
YTDDFTDR	8	Unmodified	_YTDDFTDR_					0	0	0		nc|nan|Q9H3H3-1|C11orf68;nc|nan|Q9H3H3|C11orf68;ENSG00000175573|ENST00000438576|C11orf68	nc|nan|Q9H3H3-1|C11orf68	nc|nan|Q9H3H3-1|C11orf68	MULTI-MATCH	A375_MHC_IP_R2	2		2	516.717079	1031.4196	-1.1305	-0.00058414	0.16777	8.6691E-05	-0.96272	-0.00049745	516.7170989906614	26.508	0.40766	27.168	27.058	27.466	0.65992	0.047094	8.4651E-05	NaN	9.3474	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2951600			64378	7970	46940	47308							-0.09484880483819325
YTDDMRDMYG	10	Unmodified	_YTDDMRDMYG_					0	0	0			REV__ENSG00000055732|ENST00000370589|MCOLN3	REV__ENSG00000055732|ENST00000370589|MCOLN3	MULTI-MSMS	A375_MHC_IP_R1	1	633.669189453125	2	633.741913	1265.46927	-0.69138	-0.00043816	-0.75784	-0.00048027	-1.4492	-0.00091843	633.7414118752952	31.338	0.50618	31.338	31.059	31.565	0					13	9	2	0	0	0	0.6806	1	10016	10016		14.838	2.5976	1	1766900	+		64379	16416	46941	47309	62727	62727					-0.15284256861673384
YTDELKLGGF	10	Unmodified	_YTDELKLGGF_					0	0	0			REV__nc|ENSG00000134240|P54868-3|HMGCS2	REV__nc|ENSG00000134240|P54868-3|HMGCS2	MULTI-SECPEP	A375_MHC_IP_R1	1	572.1112670898438	2	571.790047	1141.56554	-0.40115	-0.00022937	0.10174	5.8176E-05	-0.29941	-0.0001712	571.7900748384232	46.65	0.6105	46.65	46.444	47.055	0					18	11	2	0	0	0	0.90853	1	16393	16393		10.824	4.6181	1	1775700	+		64380	18759	46942	47310	62728	62728					0.0004200203222808341
YTDEPDISY	9	Unmodified	_YTDEPDISY_					0	0	0		nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D	nc|ENSG00000157388|Q01668-3|CACNA1D	nc|ENSG00000157388|Q01668-3|CACNA1D	MULTI-SECPEP	A375_MHC_IP_R2	2	1103.2174072265625	1	1102.45751	1101.45024	0.15392	0.0001697	0.14601	0.00016097	0.29993	0.00033066	1102.4572277587197	63.286	0.50763	64.026	63.734	64.241	0.74023					18	9	3	0	0	0	0.53748	1	23938	23938		30.637	13.694	1	1827000			64381	6240	46943	47311	62729	62729					-0.09643146889402487
YTDESEHATYD	11	Unmodified	_YTDESEHATYD_					0	0	0		ANO3|p.M524Rfs*4|1|0.09|ENSG00000134343|chr11:26598898-26598898|T/-|frameshift_variant;ANO3|p.K523Nfs*13|1|0.09|ENSG00000134343|chr11:26598895-26598896|-/T|frameshift_variant;ENSG00000134343|ENST00000256737|ANO3	ANO3|p.M524Rfs*4|1|0.09|ENSG00000134343|chr11:26598898-26598898|T/-|frameshift_variant	ANO3|p.M524Rfs*4|1|0.09|ENSG00000134343|chr11:26598898-26598898|T/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	666.1553955078125	2	665.757129	1329.49971	-0.71545	-0.00047632	-1.3163	-0.00087631	-2.0317	-0.0013526	665.7563190953856	27.691	0.65596	27.691	27.381	28.037	0					18	12	2	0	0	0	0.23666	1	8453	8453		51.63	9.7902	1	4005800			64382	149	46944	47312	62730	62730					-0.1518648367127753
YTDESEHATYD	11	Unmodified	_YTDESEHATYD_					0	0	0		ANO3|p.M524Rfs*4|1|0.09|ENSG00000134343|chr11:26598898-26598898|T/-|frameshift_variant;ANO3|p.K523Nfs*13|1|0.09|ENSG00000134343|chr11:26598895-26598896|-/T|frameshift_variant;ENSG00000134343|ENST00000256737|ANO3	ANO3|p.M524Rfs*4|1|0.09|ENSG00000134343|chr11:26598898-26598898|T/-|frameshift_variant	ANO3|p.M524Rfs*4|1|0.09|ENSG00000134343|chr11:26598898-26598898|T/-|frameshift_variant	MULTI-MATCH	A375_MHC_IP_R2	2		2	665.757129	1329.49971	-0.80759	-0.00053766	-0.86681	-0.00057709	-1.6744	-0.0011147	665.7567079837739	27.191	0.66402	27.869	27.587	28.251	0.67857	0.089318	0.00033648	NaN	51.63	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2821200			64383	149	46944	47312							-0.1518648367127753
YTDFDGTRVY	10	Unmodified	_YTDFDGTRVY_					0	0	0		ENSG00000137193|ENST00000373509|PIM1;ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1;ENSG00000102096|ENST00000376509|PIM2	ENSG00000137193|ENST00000373509|PIM1	ENSG00000137193|ENST00000373509|PIM1	MULTI-MSMS	A375_MHC_IP_R1	1	619.1796875	2	618.78021	1235.54587	-0.25539	-0.00015803	-0.062823	-3.8874E-05	-0.31821	-0.0001969	618.7801531079939	54.389	1.0127	54.389	54.063	55.075	0					53	19	4	0	0	0	0.0014869	2	19373	19373;19606		143.21	72.881	1	84761000			64384	4867	46945	47313	62731;62732	62731					-0.06248373978496602
YTDFDGTRVY	10	Unmodified	_YTDFDGTRVY_					0	0	0		ENSG00000137193|ENST00000373509|PIM1;ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1;ENSG00000102096|ENST00000376509|PIM2	ENSG00000137193|ENST00000373509|PIM1	ENSG00000137193|ENST00000373509|PIM1	MULTI-MSMS	A375_MHC_IP_R2	2	619.1795654296875	2	618.78021	1235.54587	-1.1153	-0.00069011	0.23418	0.0001449	-0.8811	-0.00054521	618.7803387328647	53.78	1.1213	54.531	54.249	55.371	0.75105					62	21	5	0	0	0	0.0045604	2	20254	20254;20484		135.86	71.903	1	79484000			64385	4867	46945	47313	62733;62734	62733					-0.06248373978496602
YTDFDGTRVY	10	Unmodified	_YTDFDGTRVY_					0	0	0		ENSG00000137193|ENST00000373509|PIM1;ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1;ENSG00000102096|ENST00000376509|PIM2	ENSG00000137193|ENST00000373509|PIM1	ENSG00000137193|ENST00000373509|PIM1	MSMS	A375_MHC_IP_R2	2	619.0728759765625	2	618.78021	1235.54587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.892	1	55.643	55.143	56.143	0.75075								0	0	0	0.13265	1	20725	20725		33.445	16.332	1				64386	4867	46945	47313	62735	62735					-0.06248373978496602
YTDFGESRL	9	Unmodified	_YTDFGESRL_					0	0	0			REV__PCNA|p.K110Sfs*5|1|0.32|ENSG00000132646|chr20:5118667-5118668|TT/-|frameshift_variant	REV__PCNA|p.K110Sfs*5|1|0.32|ENSG00000132646|chr20:5118667-5118668|TT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R1	1	545.1576538085938	2	544.256371	1086.49819	-0.84972	-0.00046247	0.55996	0.00030476	-0.28977	-0.00015771	544.2565304551068	23.713	0.25382	23.713	23.584	23.838	0					11	4	3	0	0	0	0.17338	1	6591	6591		39.95	12.321	1	19806000	+		64387	18668	46946	47314	62736	62736					-0.04160028178716857
YTDFGESRL	9	Unmodified	_YTDFGESRL_					0	0	0			REV__PCNA|p.K110Sfs*5|1|0.32|ENSG00000132646|chr20:5118667-5118668|TT/-|frameshift_variant	REV__PCNA|p.K110Sfs*5|1|0.32|ENSG00000132646|chr20:5118667-5118668|TT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	363.5731506347656	3	363.173339	1086.49819	-0.098408	-3.5739E-05	0.48186	0.000175	0.38345	0.00013926	363.1732562800042	23.711	0.35562	23.711	23.533	23.889	0					21	6	5	0	0	0	0.4261	1	6572	6572		28.495	10.348	1	35817000	+		64388	18668	46946	47314	62737	62737					-0.04160028178716857
YTDFGESRL	9	Unmodified	_YTDFGESRL_					0	0	0			REV__PCNA|p.K110Sfs*5|1|0.32|ENSG00000132646|chr20:5118667-5118668|TT/-|frameshift_variant	REV__PCNA|p.K110Sfs*5|1|0.32|ENSG00000132646|chr20:5118667-5118668|TT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	362.6484375	3	363.173339	1086.49819	-0.043015	-1.5622E-05	-0.59531	-0.0002162	-0.63833	-0.00023182	363.17315139405554	24.095	0.40699	24.095	23.889	24.296	0					13	7	2	0	0	0	0.65246	1	6730	6730		32.786	21.986	1	8949500	+		64389	18668	46946	47314	62738	62738					-0.04160028178716857
YTDFGESRL	9	Unmodified	_YTDFGESRL_					0	0	0			REV__PCNA|p.K110Sfs*5|1|0.32|ENSG00000132646|chr20:5118667-5118668|TT/-|frameshift_variant	REV__PCNA|p.K110Sfs*5|1|0.32|ENSG00000132646|chr20:5118667-5118668|TT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	363.57305908203125	3	363.173339	1086.49819	-0.43496	-0.00015797	0.41086	0.00014921	-0.024099	-8.7521E-06	363.17324462227947	22.959	0.51091	23.589	23.317	23.828	0.63015					29	9	4	0	0	0	0.4261	1	7312	7312		28.495	10.348	1	25445000	+		64390	18668	46946	47314	62739	62739					-0.04160028178716857
YTDFGESRL	9	Unmodified	_YTDFGESRL_					0	0	0			REV__PCNA|p.K110Sfs*5|1|0.32|ENSG00000132646|chr20:5118667-5118668|TT/-|frameshift_variant	REV__PCNA|p.K110Sfs*5|1|0.32|ENSG00000132646|chr20:5118667-5118668|TT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	363.5731201171875	3	363.173339	1086.49819	-0.37112	-0.00013478	-0.20918	-7.5968E-05	-0.5803	-0.00021075	363.1731864839458	23.643	0.45565	24.273	23.928	24.384	0.63014					13	8	3	0	0	0	0.75164	1	7646	7646		9.544	1.935	1	6218600	+		64391	18668	46946	47314	62740	62740					-0.04160028178716857
YTDFHDNEGK	10	Unmodified	_YTDFHDNEGK_					0	0	0			REV__nc|ENSG00000075043|O43526-6|KCNQ2	REV__nc|ENSG00000075043|O43526-6|KCNQ2	MULTI-SECPEP	A375_MHC_IP_R2	2	612.6961669921875	2	613.259642	1224.50473	-0.69162	-0.00042414	-0.091216	-5.5939E-05	-0.78284	-0.00048008	613.2599346388918	65.525	0.81043	66.263	65.715	66.526	0.73812					17	15	2	0	0	0	0.93799	1	24838	24838		6.7232	3.1267	1	1198800	+		64392	16647	46947	47315	62741	62741					-0.09854135018008492
YTDFNHQYGS	10	Unmodified	_YTDFNHQYGS_					0	0	0			REV__ENSG00000112818|ENST00000230588|MEP1A	REV__ENSG00000112818|ENST00000230588|MEP1A	MULTI-MSMS	A375_MHC_IP_R1	1	617.1558837890625	2	616.25436	1230.49417	-0.68702	-0.00042338	0.064922	4.0008E-05	-0.6221	-0.00038337	616.2536356619728	30.041	0.60407	30.041	29.798	30.402	0					24	11	3	0	0	0	0.39901	1	9474	9474		47.749	7.7914	1	10382000	+		64393	17757	46948	47316	62742	62742					-0.11186117672423279
YTDGPGGSGQY	11	Unmodified	_YTDGPGGSGQY_					0	0	0		nc|ENSG00000110697|O00562-2|PITPNM1;ENSG00000110697|ENST00000356404|PITPNM1;ENST00000451868.2_1_12:123484929-123519149:-|nuORF;nc|ENSG00000090975|Q9BZ72-2|PITPNM2;ENSG00000090975|ENST00000320201|PITPNM2	nc|ENSG00000110697|O00562-2|PITPNM1	nc|ENSG00000110697|O00562-2|PITPNM1	MULTI-MSMS	A375_MHC_IP_R1	1	551.6726684570312	2	551.22781	1100.44107	-0.78949	-0.00043519	0.16455	9.0706E-05	-0.62494	-0.00034448	551.2278962028264	30.832	0.65818	30.832	30.553	31.211	0					41	12	4	0	0	0	4.5543E-08	1	9872	9872		158.08	107.22	1	35634000			64394	2939	46949	47317	62743	62743					-0.10513495455074917
YTDGPGGSGQY	11	Unmodified	_YTDGPGGSGQY_					0	0	0		nc|ENSG00000110697|O00562-2|PITPNM1;ENSG00000110697|ENST00000356404|PITPNM1;ENST00000451868.2_1_12:123484929-123519149:-|nuORF;nc|ENSG00000090975|Q9BZ72-2|PITPNM2;ENSG00000090975|ENST00000320201|PITPNM2	nc|ENSG00000110697|O00562-2|PITPNM1	nc|ENSG00000110697|O00562-2|PITPNM1	MULTI-MSMS	A375_MHC_IP_R2	2	551.6273803710938	2	551.22781	1100.44107	-0.82363	-0.00045401	0.11662	6.4283E-05	-0.70701	-0.00038973	551.2278634067588	30.298	0.75871	31.016	30.708	31.467	0.71857					43	14	4	0	0	0	1.9434E-08	1	10591	10591		163.69	119.83	1	30786000			64395	2939	46949	47317	62744	62744					-0.10513495455074917
YTDGSTFSSF	10	Unmodified	_YTDGSTFSSF_					0	0	0		nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	MULTI-MSMS	A375_MHC_IP_R2	2	555.6867065429688	2	556.232561	1110.45057	-0.59026	-0.00032832	-0.52643	-0.00029282	-1.1167	-0.00062114	556.2318891816598	46.813	1.2207	47.575	47.004	48.225	0.76128					32	17	2	0	0	0	0.69833	1	17639	17639		13.042	2.2185	1	7224300			64396	14849	46950	47318	62745	62745					-0.10023727169550511
YTDHLQSY	8	Unmodified	_YTDHLQSY_					0	0	0		nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000511971.5_1_4:56749994-56766742:+|nuORF	nc|ENSG00000090989|Q9NV70-2|EXOC1	nc|ENSG00000090989|Q9NV70-2|EXOC1	MULTI-MSMS	A375_MHC_IP_R1	1	514.6315307617188	2	513.729989	1025.44543	-0.60951	-0.00031312	0.18426	9.4657E-05	-0.42526	-0.00021847	513.7299700850873	31.135	0.50605	31.135	30.959	31.465	0					21	9	3	0	0	0	0.16884	1	9982	9982		72.968	20.7	1	5300500			64397	1966	46951	47319	62746	62746					-0.06627986241505823
YTDHLQSY	8	Unmodified	_YTDHLQSY_					0	0	0		nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000511971.5_1_4:56749994-56766742:+|nuORF	nc|ENSG00000090989|Q9NV70-2|EXOC1	nc|ENSG00000090989|Q9NV70-2|EXOC1	MULTI-MSMS	A375_MHC_IP_R2	2	514.1292724609375	2	513.729989	1025.44543	-0.77432	-0.00039779	-0.27159	-0.00013952	-1.0459	-0.00053731	513.7298066880234	30.522	0.50365	31.241	31.013	31.517	0.71857					17	9	2	0	0	0	0.13337	1	10759	10759		88.954	27.596	1	6139800			64398	1966	46951	47319	62747	62747					-0.06627986241505823
YTDHLQSYVIY	11	Unmodified	_YTDHLQSYVIY_					0	0	0		nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000511971.5_1_4:56749994-56766742:+|nuORF	nc|ENSG00000090989|Q9NV70-2|EXOC1	nc|ENSG00000090989|Q9NV70-2|EXOC1	MULTI-SECPEP	A375_MHC_IP_R2	2	700.654052734375	2	701.337892	1400.66123	-0.67683	-0.00047469	-0.096144	-6.7429E-05	-0.77298	-0.00054212	701.3373332407742	78.328	0.45818	79.071	78.777	79.235	0.74344					14	8	2	0	0	0	0.98711	1	29748	29748		15.739	4.2439	1	1124000			64399	1966	46952	47320	62748	62748					-0.02307269847506177
YTDIIRDEDQF	11	Unmodified	_YTDIIRDEDQF_					0	0	0			REV__ENST00000580556.5_1_11:118881994-118885036:+|nuORF	REV__ENST00000580556.5_1_11:118881994-118885036:+|nuORF	MSMS	A375_MHC_IP_R2	2	707.723388671875	2	707.827889	1413.64122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.794	1	98.55	98.05	99.05	0.75586								0	0	0	0.16051	1	37113	37113		13.906	7.7003	1		+		64400	26342	46953	47321	62749	62749					-0.04905065578145695
YTDIPKIIY	9	Unmodified	_YTDIPKIIY_					0	0	0		nc|ENSG00000258366|Q9NZ71-8|RTEL1;nc|ENSG00000258366|Q9NZ71-4|RTEL1;nc|ENSG00000258366|Q9NZ71|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;ENSG00000258366|ENST00000360203|RTEL1;nc|ENSG00000258366|Q9NZ71-2|RTEL1;ENST00000504490.2_1_4:113277498-113277816:+|nuORF	nc|ENSG00000258366|Q9NZ71-8|RTEL1	nc|ENSG00000258366|Q9NZ71-8|RTEL1	MULTI-SECPEP	A375_MHC_IP_R2	2	562.6559448242188	2	563.313158	1124.61176	-0.5091	-0.00028678	-0.52975	-0.00029841	-1.0388	-0.0005852	563.3123843271479	83.163	0.55924	83.902	83.694	84.254	0.73962					16	10	2	0	0	0	0.67323	1	31621	31621		31.268	5.869	1	1541600			64401	9916	46954	47322	62750	62750					0.054440669343193804
YTDKIDRY	8	Unmodified	_YTDKIDRY_					0	0	0		ENST00000494815.1_1_11:864058-865677:+|nuORF;ENSG00000214063|ENST00000397397|TSPAN4;ENST00000468468.5_1_11:864058-866627:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	358.6016540527344	3	358.513585	1072.51892	-0.2066	-7.4068E-05	-0.085829	-3.0771E-05	-0.29243	-0.00010484	358.5136089057169	23.713	0.40651	23.713	23.533	23.94	0					24	6	4	0	0	0	0.16365	2	6595	6547;6595		70.332	26.56	1	914820000			64402	9603	46955	47323	62751;62752	62752					-0.014434377990482972
YTDKIDRY	8	Unmodified	_YTDKIDRY_					0	0	0		ENST00000494815.1_1_11:864058-865677:+|nuORF;ENSG00000214063|ENST00000397397|TSPAN4;ENST00000468468.5_1_11:864058-866627:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	537.66650390625	2	537.266739	1072.51892	-0.97751	-0.00052518	0.46314	0.00024883	-0.51436	-0.00027635	537.2669861821271	23.713	0.40639	23.713	23.483	23.889	0					22	7	4	0	0	0	1.3419E-05	1	6564	6564		171.09	47.635	1	301590000			64403	9603	46955	47323	62753	62753					-0.014434377990482972
YTDKIDRY	8	Unmodified	_YTDKIDRY_					0	0	0		ENST00000494815.1_1_11:864058-865677:+|nuORF;ENSG00000214063|ENST00000397397|TSPAN4;ENST00000468468.5_1_11:864058-866627:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	358.276611328125	3	358.513585	1072.51892	-0.14828	-5.3161E-05	-0.1864	-6.6827E-05	-0.33468	-0.00011999	358.51348565331983	24.067	0.91144	24.067	23.889	24.801	0					52	17	5	0	0	0	0.4193	1	6744	6744		57.722	12.022	1	192710000			64404	9603	46955	47323	62754	62754					-0.014434377990482972
YTDKIDRY	8	Unmodified	_YTDKIDRY_					0	0	0		ENST00000494815.1_1_11:864058-865677:+|nuORF;ENSG00000214063|ENST00000397397|TSPAN4;ENST00000468468.5_1_11:864058-866627:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	536.7109375	2	537.266739	1072.51892	-0.92129	-0.00049498	0.081888	4.3996E-05	-0.8394	-0.00045098	537.2667082598448	24.067	0.55819	24.067	23.889	24.447	0					25	10	4	0	0	0	0.094442	1	6750	6750		121.53	32.58	1	57017000			64405	9603	46955	47323	62755	62755					-0.014434377990482972
YTDKIDRY	8	Unmodified	_YTDKIDRY_					0	0	0		ENST00000494815.1_1_11:864058-865677:+|nuORF;ENSG00000214063|ENST00000397397|TSPAN4;ENST00000468468.5_1_11:864058-866627:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	537.6661376953125	2	537.266739	1072.51892	-1.2202	-0.00065558	0.43022	0.00023114	-0.79	-0.00042444	537.266960591791	22.963	0.91422	23.594	23.215	24.129	0.63014					40	12	5	0	0	0	0.017381	1	7275	7275		114.2	28.93	1	136970000			64406	9603	46955	47323	62756	62756					-0.014434377990482972
YTDKIDRY	8	Unmodified	_YTDKIDRY_					0	0	0		ENST00000494815.1_1_11:864058-865677:+|nuORF;ENSG00000214063|ENST00000397397|TSPAN4;ENST00000468468.5_1_11:864058-866627:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	537.666015625	2	537.266739	1072.51892	-1.1528	-0.00061934	0.40251	0.00021626	-0.75025	-0.00040309	537.266889198458	23.627	0.60854	24.257	23.928	24.537	0.63014					24	11	3	0	0	0	0.053923	2	7609	7609;7680		125.53	40.257	1	38312000			64407	9603	46955	47323	62757;62758	62757					-0.014434377990482972
YTDKIDRY	8	Unmodified	_YTDKIDRY_					0	0	0		ENST00000494815.1_1_11:864058-865677:+|nuORF;ENSG00000214063|ENST00000397397|TSPAN4;ENST00000468468.5_1_11:864058-866627:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	358.6011047363281	3	358.513585	1072.51892	-0.55363	-0.00019849	-0.045814	-1.6425E-05	-0.59945	-0.00021491	358.5136136197276	22.967	0.86632	23.597	23.062	23.928	0.63015					56	16	6	0	0	0	0.20774	1	7291	7291		70.332	8.7301	1	498850000			64408	9603	46955	47323	62759	62759					-0.014434377990482972
YTDKIDRY	8	Unmodified	_YTDKIDRY_					0	0	0		ENST00000494815.1_1_11:864058-865677:+|nuORF;ENSG00000214063|ENST00000397397|TSPAN4;ENST00000468468.5_1_11:864058-866627:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	358.9361877441406	3	358.513585	1072.51892	-0.48584	-0.00017418	0.20761	7.443E-05	-0.27823	-9.9749E-05	358.51361523151536	23.627	1.1175	24.258	23.878	24.996	0.63014					57	21	5	0	0	0	0.22517	1	7653	7653		76.825	27.27	1	132670000			64409	9603	46955	47323	62760	62760					-0.014434377990482972
YTDKIMTY	8	Oxidation (M)	_YTDKIM(Oxidation (M))TY_		YTDKIM(1)TY		YTDKIM(110)TY	0	0	1		ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2	ENSG00000076685|ENST00000404739|NT5C2	ENSG00000076685|ENST00000404739|NT5C2	MULTI-MSMS	A375_MHC_IP_R1	1	526.1439208984375	2	525.74425	1049.47395	-0.6526	-0.0003431	0.0040406	2.1243E-06	-0.64856	-0.00034098	525.7442691381868	32.36	0.81139	32.36	32.075	32.887	0					41	15	4	0	0	0	0.015364	1	10418	10418		110.67	38.752	1	66733000			64410	1638	46956	47324	62761	62761		52			-0.048810046565904486
YTDKIMTY	8	Oxidation (M)	_YTDKIM(Oxidation (M))TY_		YTDKIM(1)TY		YTDKIM(110)TY	0	0	1		ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2	ENSG00000076685|ENST00000404739|NT5C2	ENSG00000076685|ENST00000404739|NT5C2	MULTI-MSMS	A375_MHC_IP_R1	1	526.1436767578125	2	525.74425	1049.47395	-0.46005	-0.00024187	-0.23998	-0.00012617	-0.70003	-0.00036803	525.744063529987	33.909	3.2977	33.909	32.887	36.184	0					144	64	4	0	0	0	0.015364	3	10989	10989;11241;11481		110.67	34.914	1	12229000			64411	1638	46956	47324	62762;62763;62764	62762		52			-0.048810046565904486
YTDKIMTY	8	Oxidation (M)	_YTDKIM(Oxidation (M))TY_		YTDKIM(1)TY		YTDKIM(110)TY	0	0	1		ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2	ENSG00000076685|ENST00000404739|NT5C2	ENSG00000076685|ENST00000404739|NT5C2	MULTI-MSMS	A375_MHC_IP_R2	2	526.143798828125	2	525.74425	1049.47395	-0.49113	-0.00025821	-0.20923	-0.00011	-0.70036	-0.00036821	525.7441595171163	31.69	0.76213	32.427	32.198	32.96	0.73691					40	14	4	0	0	0	0.015364	1	11180	11180		110.67	34.914	1	59082000			64412	1638	46956	47324	62765	62765		52			-0.048810046565904486
YTDKIMTY	8	Oxidation (M)	_YTDKIM(Oxidation (M))TY_		YTDKIM(1)TY		YTDKIM(77)TY	0	0	1		ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2	ENSG00000076685|ENST00000404739|NT5C2	ENSG00000076685|ENST00000404739|NT5C2	MULTI-MSMS	A375_MHC_IP_R2	2	526.1436767578125	2	525.74425	1049.47395	-0.81011	-0.00042591	0.15735	8.2728E-05	-0.65276	-0.00034318	525.7440939004118	33.708	3.5505	34.46	33.026	36.576	0.75225					121	69	3	0	0	0	0.16659	3	12127	11966;12127;12255		76.825	19.762	1	8679200			64413	1638	46956	47324	62766;62767;62768	62767		52			-0.048810046565904486
YTDKVVIGM	9	Unmodified	_YTDKVVIGM_					0	0	0		ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENSG00000074800|ENST00000234590|ENO1	ENSG00000074800|ENST00000234590|ENO1	MULTI-SECPEP	A375_MHC_IP_R1	1	513.6702880859375	2	513.270435	1024.52632	-0.56792	-0.0002915	0.0020944	1.075E-06	-0.56583	-0.00029042	513.2702801526902	58.623	0.50791	58.623	58.328	58.836	0					15	9	2	0	0	0	0.20059	1	21066	21066		59.368	27.063	1	2614300			64414	1593	46957	47325	62769	62769					0.015035784770361715
YTDKVVIGM	9	Unmodified	_YTDKVVIGM_					0	0	0		ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENSG00000074800|ENST00000234590|ENO1	ENSG00000074800|ENST00000234590|ENO1	MULTI-SECPEP	A375_MHC_IP_R2	2	513.6695556640625	2	513.270435	1024.52632	-1.036	-0.00053173	-0.069845	-3.585E-05	-1.1058	-0.00056758	513.2702725471042	57.836	0.55785	58.585	58.221	58.779	0.74894					17	10	2	0	0	0	0.16595	1	21852	21852		53.404	13.447	1	3089700			64415	1593	46957	47325	62770	62770					0.015035784770361715
YTDLLRLFEY	10	Unmodified	_YTDLLRLFEY_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-SECPEP	A375_MHC_IP_R1	1	667.2451171875	2	666.845353	1331.67615	-0.56711	-0.00037818	0.57944	0.0003864	0.012334	8.2246E-06	666.8456939785475	128.76	0.25555	128.76	128.63	128.89	0					10	4	3	0	0	0	0.098039	1	49505	49505		105.35	84.931	1	21644000			64416	9575	46958	47326	62771	62771					0.023582220204616533
YTDLLRLFEY	10	Unmodified	_YTDLLRLFEY_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-SECPEP	A375_MHC_IP_R2	2	667.2445068359375	2	666.845353	1331.67615	-0.87374	-0.00058265	-0.63406	-0.00042282	-1.5078	-0.0010055	666.844968255737	128.54	0.3038	128.78	128.65	128.96	0.23946					10	5	3	0	0	0	0.13071	1	50506	50506		98.73	83.481	1	22339000			64417	9575	46958	47326	62772	62772					0.023582220204616533
YTDLLRLL	8	Unmodified	_YTDLLRLL_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	A375_MHC_IP_R1	1	503.1374816894531	2	503.800217	1005.58588	-0.30247	-0.00015238	1.6792	0.00084596	1.3767	0.00069358	503.8008994004762	28.669	0.50644	28.669	28.339	28.845	0					15	9	2	0	0	0	0.97144	1	8912	8912		14.582	12.004	1	1610000	+		64418	21249	46959	47327	62773	62773					0.08331217482702868
YTDLLRLL	8	Unmodified	_YTDLLRLL_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	A375_MHC_IP_R2	2	503.13751220703125	2	503.800217	1005.58588	-0.68142	-0.0003433	2.2018	0.0011092	1.5203	0.00076594	503.80131926211953	27.815	0.40442	28.494	28.251	28.655	0.67857					10	7	2	0	0	0	0.91495	1	9473	9473		18.135	9.5417	1	1430900	+		64419	21249	46959	47327	62774	62774					0.08331217482702868
YTDLTTIQVTD	11	Unmodified	_YTDLTTIQVTD_					0	0	0		nc|ENSG00000172061|Q8TF66-2|LRRC15;ENSG00000172061|ENST00000347624|LRRC15	nc|ENSG00000172061|Q8TF66-2|LRRC15	nc|ENSG00000172061|Q8TF66-2|LRRC15	MULTI-MSMS	A375_MHC_IP_R1	1	635.7146606445312	2	635.314083	1268.61361	-0.6721	-0.00042699	1.5402	0.00097854	0.86814	0.00055154	635.3151556298086	74.716	0.45661	74.716	74.502	74.958	0					14	8	2	0	0	0	0.72801	1	27275	27275		10.8	1.4164	1	1541900			64420	7677	46960	47328	62775	62775					-0.009949688383812827
YTDLTTIQVTD	11	Unmodified	_YTDLTTIQVTD_					0	0	0		nc|ENSG00000172061|Q8TF66-2|LRRC15;ENSG00000172061|ENST00000347624|LRRC15	nc|ENSG00000172061|Q8TF66-2|LRRC15	nc|ENSG00000172061|Q8TF66-2|LRRC15	MULTI-MATCH	A375_MHC_IP_R2	2		2	635.314083	1268.61361	-0.78113	-0.00049626	-0.096545	-6.1337E-05	-0.87767	-0.0005576	635.8167525041291	74.024	0.40611	74.761	74.501	74.907	0.73751	0.022858	-0.0017119	NaN	10.8	16	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1510200			64421	7677	46960	47328							-0.009949688383812827
YTDLVTRQKTE	11	Unmodified	_YTDLVTRQKTE_					0	0	0			REV__SON-ITSN1|1|fusion	REV__SON-ITSN1|1|fusion	MULTI-SECPEP	A375_MHC_IP_R2	2	451.66619873046875	3	451.905141	1352.69359	-0.64542	-0.00029167	0.74466	0.00033652	0.099237	4.4846E-05	451.9051312101515	26.475	0.25407	27.135	27.008	27.262	0.65992					7	4	2	0	0	0	0.99732	1	8940	8940		6.6235	0.84002	1	3425400	+		64422	28024	46961	47329	62776	62776					0.03135517555483602
YTDMESEDY	9	Oxidation (M)	_YTDM(Oxidation (M))ESEDY_		YTDM(1)ESEDY		YTDM(93)ESEDY	0	0	1		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000474971.1_1_X:53563041-53563582:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	A375_MHC_IP_R1	1	585.1029052734375	2	584.702977	1167.3914	-0.56283	-0.00032909	-0.11333	-6.6265E-05	-0.67616	-0.00039535	584.7028411723027	30.593	0.60739	30.593	30.351	30.959	0					26	11	3	0	0	0	0.012712	1	9736	9736		92.822	69.674	1	5834200			64423	1846	46962	47330	62777	62777		65			-0.18559991246047503
YTDMESEDY	9	Oxidation (M)	_YTDM(Oxidation (M))ESEDY_		YTDM(1)ESEDY		YTDM(82)ESEDY	0	0	1		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000474971.1_1_X:53563041-53563582:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	A375_MHC_IP_R2	2	585.1021118164062	2	584.702977	1167.3914	-0.64775	-0.00037874	0.17247	0.00010084	-0.47528	-0.0002779	584.703017567559	30.079	0.65927	30.797	30.557	31.216	0.71857					31	12	3	0	0	0	0.022213	1	10529	10529		81.613	45.569	1	5747000			64424	1846	46962	47330	62778	62778		65			-0.18559991246047503
YTDMESEDY	9	Unmodified	_YTDMESEDY_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000474971.1_1_X:53563041-53563582:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	A375_MHC_IP_R2	2	577.1049194335938	2	576.705519	1151.39649	-0.061112	-3.5243E-05	-0.68928	-0.00039751	-0.7504	-0.00043276	576.7051842856876	44.202	0.50645	44.971	44.732	45.239	0.76909					13	9	2	0	0	0	0.47368	1	16521	16521		14.838	10.082	1	1549900			64425	1846	46962	47331	62779	62779					-0.17315687383438672
YTDMESEDY	9	Unmodified	_YTDMESEDY_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000474971.1_1_X:53563041-53563582:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MATCH	A375_MHC_IP_R1	1		2	576.705519	1151.39649	0.33786	0.00019485	-0.14675	-8.4631E-05	0.19111	0.00011022	576.7053796802445	44.71	0.35516	44.71	44.523	44.878	0	-0.1302	0.0004986	NaN	14.838	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1335400			64426	1846	46962	47331							-0.17315687383438672
YTDMTTGLY	9	Unmodified	_YTDMTTGLY_					0	0	0			REV__ENSG00000072274|ENST00000360110|TFRC	REV__ENSG00000072274|ENST00000360110|TFRC	MULTI-SECPEP	A375_MHC_IP_R2	2	533.19580078125	2	532.733883	1063.45321	-0.72797	-0.00038782	0.107	5.7001E-05	-0.62098	-0.00033082	532.7339149090084	31.722	0.35512	32.459	32.249	32.605	0.73692					11	6	2	0	0	0	0.58271	1	11237	11237		26.884	9.9414	1	2857000	+		64427	16602	46963	47332	62780	62780					-0.07597595036259008
YTDNLVRVW	9	Unmodified	_YTDNLVRVW_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000509148.1_1_5:180663979-180664048:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-MSMS	A375_MHC_IP_R1	1	582.6950073242188	2	583.303655	1164.59276	-0.098475	-5.7441E-05	-0.25182	-0.00014689	-0.3503	-0.00020433	583.3034902185901	82.087	1.7742	82.087	81.657	83.432	0					86	34	4	0	0	0	0.00010014	2	30013	29928;30013		216.57	152.33	1	208630000			64428	9470	46964	47333	62781;62782	62782					0.01704530363304002
YTDNLVRVW	9	Unmodified	_YTDNLVRVW_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000509148.1_1_5:180663979-180664048:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-MSMS	A375_MHC_IP_R2	2	582.695068359375	2	583.303655	1164.59276	-0.51259	-0.00029899	0.017437	1.0171E-05	-0.49515	-0.00028882	583.3036275806179	81.312	1.625	82.057	81.622	83.247	0.74467					77	31	4	0	0	0	8.3039E-12	3	30847	30783;30847;30998		249.11	174.69	1	167840000			64429	9470	46964	47333	62783;62784;62785	62784					0.01704530363304002
YTDPADQNL	9	Unmodified	_YTDPADQNL_					0	0	0			REV__ENSG00000213918|ENST00000246949|DNASE1	REV__ENSG00000213918|ENST00000246949|DNASE1	MULTI-SECPEP	A375_MHC_IP_R1	1	519.1323852539062	2	518.732729	1035.4509	-0.68211	-0.00035383	-0.19207	-9.963E-05	-0.87417	-0.00045346	518.7325877453833	27.056	0.75556	27.056	26.878	27.634	0					26	11	3	0	0	0	0.35487	1	8148	8148		29.082	29.082	1	25243000	+		64430	22634	46965	47334	62786	62786					-0.06540307449722604
YTDPADQNL	9	Unmodified	_YTDPADQNL_					0	0	0			REV__ENSG00000213918|ENST00000246949|DNASE1	REV__ENSG00000213918|ENST00000246949|DNASE1	MULTI-SECPEP	A375_MHC_IP_R2	2	519.1322631835938	2	518.732729	1035.4509	-1.0622	-0.00055097	-0.19801	-0.00010271	-1.2602	-0.00065369	518.7325962918276	26.527	0.66363	27.187	27.008	27.671	0.65992					25	9	3	0	0	0	0.50702	1	8975	8975		25.399	25.399	1	25100000	+		64431	22634	46965	47334	62787	62787					-0.06540307449722604
YTDPAGLRNY	10	Unmodified	_YTDPAGLRNY_					0	0	0		nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP;ENSG00000114650|ENST00000265565|SCAP	nc|ENSG00000114650|Q12770-4|SCAP	nc|ENSG00000114650|Q12770-4|SCAP	MULTI-MSMS	A375_MHC_IP_R1	1	585.6831665039062	2	585.28292	1168.55129	-0.094047	-5.5044E-05	-0.22442	-0.00013135	-0.31847	-0.00018639	585.2828757977031	43.316	0.86532	43.316	42.841	43.706	0					54	16	5	0	0	0	0.0079374	1	14970	14970		93.938	37.761	1	29126000			64432	3234	46966	47335	62788	62788					-0.026246503960464906
YTDPAGLRNY	10	Unmodified	_YTDPAGLRNY_					0	0	0		nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP;ENSG00000114650|ENST00000265565|SCAP	nc|ENSG00000114650|Q12770-4|SCAP	nc|ENSG00000114650|Q12770-4|SCAP	MULTI-MSMS	A375_MHC_IP_R2	2	585.6835327148438	2	585.28292	1168.55129	-0.43506	-0.00025463	-0.40615	-0.00023771	-0.84121	-0.00049234	585.2828722017977	42.666	0.91528	43.438	42.91	43.826	0.7724					55	17	6	0	0	0	0.056042	1	15788	15788		74.2	25.854	1	32339000			64433	3234	46966	47335	62789	62789					-0.026246503960464906
YTDPDQFVY	9	Unmodified	_YTDPDQFVY_					0	0	0		nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6	nc|ENSG00000091409|P23229-4|ITGA6	nc|ENSG00000091409|P23229-4|ITGA6	MULTI-MSMS	A375_MHC_IP_R2	2	575.209716796875	2	574.250754	1146.48696	-0.11693	-6.7146E-05	-0.56549	-0.00032473	-0.68241	-0.00039188	574.2502858037594	84.469	0.76094	85.205	84.916	85.677	0.73602					34	14	3	0	0	0	0.60101	1	32151	32151		14.838	4.0143	1	7072500			64434	14499	46967	47336	62790	62790					-0.08042850272863689
YTDPPQESY	9	Unmodified	_YTDPPQESY_					0	0	0		ENST00000537140.5_1_11:115040311-115375169:-|nuORF;nc|ENSG00000182985|Q9BY67-5|CADM1;nc|ENSG00000182985|Q9BY67|CADM1;nc|ENSG00000182985|Q9BY67-4|CADM1;ENSG00000182985|ENST00000331581|CADM1;nc|ENSG00000182985|Q9BY67-2|CADM1	ENST00000537140.5_1_11:115040311-115375169:-|nuORF	ENST00000537140.5_1_11:115040311-115375169:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	550.697509765625	2	550.232561	1098.45057	-0.93761	-0.0005159	4.3946	0.002418	3.4569	0.0019021	550.7372430505799	36.265	0.50907	37.036	36.749	37.258	0.7709					19	9	3	0	0	0	0.12771	1	13116	13116		45.7	16.618	1	2271800			64435	8453	46968	47337	62791	62791					-0.09471727169557198
YTDPSSLRK	9	Unmodified	_YTDPSSLRK_					0	0	0		ENSG00000074047|ENST00000361492|GLI2;nc|ENSG00000074047|P10070|GLI2;ENST00000463680.5_1_9:3898613-3937138:-|nuORF;ENST00000467497.6_1_9:3855970-4118001:-|nuORF;GLI1|p.I512Lfs*2|1|0.48|ENSG00000111087|chr12:57469655-57469656|-/TTGTG|frameshift_variant;ENSG00000126603|ENST00000433375|GLIS2;nc|ENSG00000107249|Q8NEA6|GLIS3;nc|ENSG00000074047|P10070-4|GLI2;nc|ENSG00000074047|P10070-3|GLI2;ENST00000452692.5_1_2:121728002-121748192:+|nuORF;ENST00000438299.5_1_2:121728002-121748192:+|nuORF;ENSG00000107249|ENST00000381971|GLIS3;nc|ENSG00000074047|P10070-2|GLI2;nc|ENSG00000074047|P10070-1|GLI2;ENSG00000106571|ENST00000395925|GLI3;nc|ENSG00000111087|P08151-3|GLI1;nc|ENSG00000111087|P08151-2|GLI1;ENSG00000111087|ENST00000228682|GLI1;nc|ENSG00000174332|Q8NBF1|GLIS1;ENSG00000174332|ENST00000628545|GLIS1	ENSG00000074047|ENST00000361492|GLI2;ENSG00000106571|ENST00000395925|GLI3;nc|ENSG00000111087|P08151-3|GLI1;nc|ENSG00000174332|Q8NBF1|GLIS1	nc|ENSG00000174332|Q8NBF1|GLIS1	MULTI-MSMS	A375_MHC_IP_R1	1	356.5890808105469	3	356.189101	1065.54547	-0.10519	-3.7468E-05	-0.15317	-5.4558E-05	-0.25836	-9.2026E-05	356.18899612810225	19.585	0.35642	19.585	19.368	19.725	0					14	6	4	0	0	0	0.57432	1	4924	4924		11.518	4.8875	1	3290500			64436	1575;2699;2964;7870	46969	47338	62792	62792					0.015322510922715082
YTDQAFFSF	9	Unmodified	_YTDQAFFSF_					0	0	0		ENSG00000169359|ENST00000643144|SLC33A1;SLC33A1|p.L269*|1|0.14|ENSG00000169359|chr3:155842589-155842589|A/-|frameshift_variant	ENSG00000169359|ENST00000643144|SLC33A1	ENSG00000169359|ENST00000643144|SLC33A1	MULTI-MSMS	A375_MHC_IP_R1	1	563.6472778320312	2	563.248015	1124.48148	-0.081284	-4.5783E-05	-0.12489	-7.0343E-05	-0.20617	-0.00011613	563.2479418422243	126.55	0.25208	126.55	126.46	126.71	0					7	4	2	0	0	0	0.02559	1	48377	48377		78.728	49.646	1	6119200			64437	7402	46970	47339	62793	62793					-0.07578529064676331
YTDQAFFSF	9	Unmodified	_YTDQAFFSF_					0	0	0		ENSG00000169359|ENST00000643144|SLC33A1;SLC33A1|p.L269*|1|0.14|ENSG00000169359|chr3:155842589-155842589|A/-|frameshift_variant	ENSG00000169359|ENST00000643144|SLC33A1	ENSG00000169359|ENST00000643144|SLC33A1	MULTI-SECPEP	A375_MHC_IP_R2	2	562.742431640625	2	563.248015	1124.48148	-0.48325	-0.00027219	-0.27467	-0.00015471	-0.75792	-0.0004269	563.2477491745549	126.18	0.3054	126.48	126.28	126.58	0.2951					9	5	2	0	0	0	0.20645	1	49335	49335		39.95	14.55	1	4794200			64438	7402	46970	47339	62794	62794					-0.07578529064676331
YTDQFSRNY	9	Unmodified	_YTDQFSRNY_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	A375_MHC_IP_R1	1	597.6646118164062	2	597.264727	1192.5149	-0.2142	-0.00012793	-0.14055	-8.3948E-05	-0.35475	-0.00021188	597.2646760195862	35.804	0.61116	35.804	35.522	36.133	0					42	11	5	0	0	0	7.7695E-07	1	11902	11902		218.2	178.24	1	54948000			64439	2483	46971	47340	62795	62795					-0.07365527292745355
YTDQFSRNY	9	Unmodified	_YTDQFSRNY_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	A375_MHC_IP_R2	2	597.6644287109375	2	597.264727	1192.5149	-0.79008	-0.00047189	0.43472	0.00025964	-0.35536	-0.00021224	597.2650114780173	35.185	0.75774	35.949	35.677	36.435	0.76338					42	14	5	0	0	0	4.6694E-18	1	12707	12707		249.55	201.8	1	46363000			64440	2483	46971	47340	62796	62796					-0.07365527292745355
YTDQLSRY	8	Unmodified	_YTDQLSRY_					0	0	0			REV__nc|ENSG00000179583|P33076-2|CIITA	REV__nc|ENSG00000179583|P33076-2|CIITA	MULTI-MSMS	A375_MHC_IP_R2	2	523.6504516601562	2	523.251089	1044.48762	-0.93982	-0.00049176	0.038333	2.0058E-05	-0.90149	-0.00047171	523.2511189881144	26.323	1.6304	26.983	26.551	28.181	0.65992					86	31	5	0	0	0	0.73622	1	9041	9041		24.021	3.5669	1	289310000	+		64441	21570	46972	47341	62797	62797					-0.032840108331583906
YTDRFTES	8	Unmodified	_YTDRFTES_					0	0	0			REV__ENSG00000175264|ENST00000308064|CHST1	REV__ENSG00000175264|ENST00000308064|CHST1	MULTI-MSMS	A375_MHC_IP_R1	1	510.12701416015625	2	509.727446	1017.44034	-0.59668	-0.00030414	0.15079	7.6863E-05	-0.44589	-0.00022728	509.72732732395644	27.057	0.70489	27.057	26.828	27.533	0					42	13	5	0	0	0	0.31691	1	8147	8147		57.471	9.1255	1	81303000	+		64442	21335	46973	47342	62798	62798					-0.06768290104128027
YTDRFTES	8	Unmodified	_YTDRFTES_					0	0	0			REV__ENSG00000175264|ENST00000308064|CHST1	REV__ENSG00000175264|ENST00000308064|CHST1	MULTI-MSMS	A375_MHC_IP_R2	2	510.12701416015625	2	509.727446	1017.44034	-1.1115	-0.00056656	0.28361	0.00014456	-0.82789	-0.000422	509.72743947415125	26.525	0.61174	27.185	27.008	27.62	0.65992					36	11	4	0	0	0	0.31691	1	8955	8955		57.471	6.6163	1	76262000	+		64443	21335	46973	47342	62799	62799					-0.06768290104128027
YTDRFTES	8	Unmodified	_YTDRFTES_					0	0	0			REV__ENSG00000175264|ENST00000308064|CHST1	REV__ENSG00000175264|ENST00000308064|CHST1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	509.727446	1017.44034	-0.59668	-0.00030414	0.15079	7.6863E-05	-0.44589	-0.00022728	509.72732732395644	27.057	0.70489	27.057	26.828	27.533	0	-0.06435	-7.0965E-05	NaN	57.471	42	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81303000	+		64444	21335	46973	47342							-0.06768290104128027
YTDRFTES	8	Unmodified	_YTDRFTES_					0	0	0			REV__ENSG00000175264|ENST00000308064|CHST1	REV__ENSG00000175264|ENST00000308064|CHST1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	509.727446	1017.44034	-1.1115	-0.00056656	0.28361	0.00014456	-0.82789	-0.000422	509.72743947415125	26.525	0.61174	27.185	27.008	27.62	0.65992	0.06435	6.4437E-05	NaN	57.471	36	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76262000	+		64445	21335	46973	47342							-0.06768290104128027
YTDSEPRATY	10	Unmodified	_YTDSEPRATY_					0	0	0		ENSG00000158480|ENST00000289431|SPATA2	ENSG00000158480|ENST00000289431|SPATA2	ENSG00000158480|ENST00000289431|SPATA2	MULTI-MSMS	A375_MHC_IP_R1	1	602.1691284179688	2	601.769842	1201.52513	-0.69339	-0.00041726	0.44566	0.00026818	-0.24773	-0.00014907	601.7700763615443	26.342	0.50753	26.342	26.118	26.626	0					23	9	3	0	0	0	0.011507	1	7826	7826		118.21	21.843	1	9331700			64446	6307	46974	47343	62800	62800					-0.06756964358191908
YTDSEPRATY	10	Unmodified	_YTDSEPRATY_					0	0	0		ENSG00000158480|ENST00000289431|SPATA2	ENSG00000158480|ENST00000289431|SPATA2	ENSG00000158480|ENST00000289431|SPATA2	MULTI-MSMS	A375_MHC_IP_R2	2	602.16943359375	2	601.769842	1201.52513	-0.93578	-0.00056312	0.30846	0.00018562	-0.62732	-0.0003775	601.7699599364206	25.844	0.66241	26.503	26.245	26.907	0.65992					22	12	3	0	0	0	0.0093639	1	8658	8658		128.58	32.212	1	6521800			64447	6307	46974	47343	62801	62801					-0.06756964358191908
YTDSSYEEKKY	11	Unmodified	_YTDSSYEEKKY_					0	0	0		ENST00000479578.5_1_1:110198981-110200495:+|nuORF;ENST00000490171.1_1_1:110230495-110231001:+|nuORF;ENST00000461767.5_1_1:110198981-110199949:+|nuORF;ENST00000568786.1_1_1:110210737-110211998:+|nuORF;ENST00000481656.2_1_1:110210707-110211256:+|nuORF;ENST00000369833.5_1_1:110198981-110199543:+|nuORF;ENST00000464206.5_1_1:110210707-110211992:+|nuORF;ENST00000464733.5_1_1:110198981-110200115:+|nuORF;nc|ENSG00000168765|Q03013-3|GSTM4;ENST00000476040.6_1_1:110210707-110212286:+|nuORF;nc|ENSG00000134184|P09488-2|GSTM1;nc|ENSG00000213366|P28161-2|GSTM2;nc|ENSG00000168765|Q03013-2|GSTM4;ENSG00000213366|ENST00000241337|GSTM2;ENSG00000168765|ENST00000369836|GSTM4;ENSG00000134184|ENST00000309851|GSTM1	ENST00000479578.5_1_1:110198981-110200495:+|nuORF	ENST00000479578.5_1_1:110198981-110200495:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	471.9453430175781	3	471.54539	1411.61434	-0.48431	-0.00022837	0.22327	0.00010528	-0.26104	-0.00012309	471.5455429646636	19.746	0.45789	19.746	19.471	19.928	0					23	8	4	0	0	0	0.00033917	1	4946	4946		117.8	86.355	1	19381000			64448	12478	46975	47344	62802	62802					-0.07500174189340214
YTDSSYEEKKY	11	Unmodified	_YTDSSYEEKKY_					0	0	0		ENST00000479578.5_1_1:110198981-110200495:+|nuORF;ENST00000490171.1_1_1:110230495-110231001:+|nuORF;ENST00000461767.5_1_1:110198981-110199949:+|nuORF;ENST00000568786.1_1_1:110210737-110211998:+|nuORF;ENST00000481656.2_1_1:110210707-110211256:+|nuORF;ENST00000369833.5_1_1:110198981-110199543:+|nuORF;ENST00000464206.5_1_1:110210707-110211992:+|nuORF;ENST00000464733.5_1_1:110198981-110200115:+|nuORF;nc|ENSG00000168765|Q03013-3|GSTM4;ENST00000476040.6_1_1:110210707-110212286:+|nuORF;nc|ENSG00000134184|P09488-2|GSTM1;nc|ENSG00000213366|P28161-2|GSTM2;nc|ENSG00000168765|Q03013-2|GSTM4;ENSG00000213366|ENST00000241337|GSTM2;ENSG00000168765|ENST00000369836|GSTM4;ENSG00000134184|ENST00000309851|GSTM1	ENST00000479578.5_1_1:110198981-110200495:+|nuORF	ENST00000479578.5_1_1:110198981-110200495:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	707.7154541015625	2	706.814447	1411.61434	-0.67389	-0.00047631	0.17483	0.00012357	-0.49905	-0.00035274	706.8145819335716	19.73	0.35675	19.73	19.521	19.877	0					17	6	4	0	0	0	0.18322	1	4961	4961		75.571	70.274	1	5581900			64449	12478	46975	47344	62803	62803					-0.07500174189340214
YTDSSYEEKKY	11	Unmodified	_YTDSSYEEKKY_					0	0	0		ENST00000479578.5_1_1:110198981-110200495:+|nuORF;ENST00000490171.1_1_1:110230495-110231001:+|nuORF;ENST00000461767.5_1_1:110198981-110199949:+|nuORF;ENST00000568786.1_1_1:110210737-110211998:+|nuORF;ENST00000481656.2_1_1:110210707-110211256:+|nuORF;ENST00000369833.5_1_1:110198981-110199543:+|nuORF;ENST00000464206.5_1_1:110210707-110211992:+|nuORF;ENST00000464733.5_1_1:110198981-110200115:+|nuORF;nc|ENSG00000168765|Q03013-3|GSTM4;ENST00000476040.6_1_1:110210707-110212286:+|nuORF;nc|ENSG00000134184|P09488-2|GSTM1;nc|ENSG00000213366|P28161-2|GSTM2;nc|ENSG00000168765|Q03013-2|GSTM4;ENSG00000213366|ENST00000241337|GSTM2;ENSG00000168765|ENST00000369836|GSTM4;ENSG00000134184|ENST00000309851|GSTM1	ENST00000479578.5_1_1:110198981-110200495:+|nuORF	ENST00000479578.5_1_1:110198981-110200495:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	471.9449157714844	3	471.54539	1411.61434	-0.85151	-0.00040153	-0.80121	-0.00037781	-1.6527	-0.00077933	471.5453135386564	19.005	0.29975	19.608	19.483	19.783	0.60308					14	5	4	0	0	0	0.001137	1	5768	5768		102.46	76.117	1	35827000			64450	12478	46975	47344	62804	62804					-0.07500174189340214
YTDSSYEEKKY	11	Unmodified	_YTDSSYEEKKY_					0	0	0		ENST00000479578.5_1_1:110198981-110200495:+|nuORF;ENST00000490171.1_1_1:110230495-110231001:+|nuORF;ENST00000461767.5_1_1:110198981-110199949:+|nuORF;ENST00000568786.1_1_1:110210737-110211998:+|nuORF;ENST00000481656.2_1_1:110210707-110211256:+|nuORF;ENST00000369833.5_1_1:110198981-110199543:+|nuORF;ENST00000464206.5_1_1:110210707-110211992:+|nuORF;ENST00000464733.5_1_1:110198981-110200115:+|nuORF;nc|ENSG00000168765|Q03013-3|GSTM4;ENST00000476040.6_1_1:110210707-110212286:+|nuORF;nc|ENSG00000134184|P09488-2|GSTM1;nc|ENSG00000213366|P28161-2|GSTM2;nc|ENSG00000168765|Q03013-2|GSTM4;ENSG00000213366|ENST00000241337|GSTM2;ENSG00000168765|ENST00000369836|GSTM4;ENSG00000134184|ENST00000309851|GSTM1	ENST00000479578.5_1_1:110198981-110200495:+|nuORF	ENST00000479578.5_1_1:110198981-110200495:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	707.21337890625	2	706.814447	1411.61434	-0.9972	-0.00070483	-0.32242	-0.00022789	-1.3196	-0.00093272	706.8141714548221	19.005	0.19953	19.608	19.483	19.683	0.60308					6	3	2	0	0	0	0.19525	1	5810	5810		72.59	61.095	1	9577100			64451	12478	46975	47344	62805	62805					-0.07500174189340214
YTDSYAPGSYG	11	Unmodified	_YTDSYAPGSYG_					0	0	0			REV__ENST00000481161.5_1_2:163200677-163213018:+|nuORF	REV__ENST00000481161.5_1_2:163200677-163213018:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	591.1439208984375	2	590.743293	1179.47203	-0.39657	-0.00023427	1.7092	0.0010097	1.3127	0.00077545	590.7436694002088	100.73	0.7686	101.49	100.88	101.65	0.76278					20	14	2	0	0	0	0.78118	1	38165	38165		32.786	14.639	1	1905100	+		64452	17869	46976	47345	62806	62806					-0.11052342140851579
YTDSYTDTY	9	Unmodified	_YTDSYTDTY_					0	0	0		SON-ITSN1|1|fusion;SON-ITSN1|3|fusion;SON-ITSN1|2|fusion;SON-ITSN1|4|fusion;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-5|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-10|SON	SON-ITSN1|1|fusion	SON-ITSN1|1|fusion	MULTI-MSMS	A375_MHC_IP_R1	1	565.1220092773438	2	564.722027	1127.4295	-0.51265	-0.00028951	0.098871	5.5835E-05	-0.41378	-0.00023367	564.7220421265124	46.581	1.1207	46.581	46.245	47.366	0					80	21	5	0	0	0	0.005759	4	16293	16293;16339;16531;16585		133.7	33.331	1	100630000			64453	29217	46977	47346	62807;62808;62809;62810	62807					-0.12911737269087098
YTDSYTDTY	9	Unmodified	_YTDSYTDTY_					0	0	0		SON-ITSN1|1|fusion;SON-ITSN1|3|fusion;SON-ITSN1|2|fusion;SON-ITSN1|4|fusion;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-5|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-10|SON	SON-ITSN1|1|fusion	SON-ITSN1|1|fusion	MULTI-MSMS	A375_MHC_IP_R2	2	565.1218872070312	2	564.722027	1127.4295	-0.40212	-0.00022708	0.0815	4.6025E-05	-0.32062	-0.00018106	564.7220619534285	46.015	1.3164	46.78	46.403	47.719	0.76519					81	25	5	0	0	0	0.005759	5	17384	17162;17320;17384;17458;17551		133.7	33.331	1	144460000			64454	29217	46977	47346	62811;62812;62813;62814;62815	62813					-0.12911737269087098
YTDTAKKSKV	10	Unmodified	_YTDTAKKSKV_					0	0	0			REV__nc|ENSG00000157107|Q0JRZ9-2|FCHO2	REV__nc|ENSG00000157107|Q0JRZ9-2|FCHO2	MULTI-SECPEP	A375_MHC_IP_R2	2	570.1432495117188	2	570.816596	1139.61864	-0.4673	-0.00026674	-0.2395	-0.00013671	-0.70681	-0.00040346	571.3178723244398	50.398	0.45705	51.152	50.904	51.361	0.75406					14	8	2	0	0	0	0.78945	1	18865	18865		19.257	7.6167	1	1459500	+		64455	20013	46978	47347	62816	62816					0.05441379814897118
YTDTAKKSKV	10	Unmodified	_YTDTAKKSKV_					0	0	0			REV__nc|ENSG00000157107|Q0JRZ9-2|FCHO2	REV__nc|ENSG00000157107|Q0JRZ9-2|FCHO2	MULTI-MATCH	A375_MHC_IP_R1	1		2	570.816596	1139.61864	-0.18959	-0.00010822	-0.50055	-0.00028572	-0.69014	-0.00039394	571.3176752077329	51.271	0.35585	51.271	51.068	51.424	0	0.059683	-9.084E-05	NaN	19.257	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1302400	+		64456	20013	46978	47347							0.05441379814897118
YTDTYSDTY	9	Unmodified	_YTDTYSDTY_					0	0	0			REV__SON-ITSN1|1|fusion	REV__SON-ITSN1|1|fusion	MULTI-MSMS	A375_MHC_IP_R1	1	565.6390991210938	2	564.722027	1127.4295	-0.51265	-0.00028951	0.098871	5.5835E-05	-0.41378	-0.00023367	564.7220421265124	46.581	1.1207	46.581	46.245	47.366	0					80	21	5	0	0	0	0.067501	1	16279	16279		57.471	0	1	100630000	+		64457	28024	46979	47348	62817	62817					-0.1291173726906436
YTDTYSDTY	9	Unmodified	_YTDTYSDTY_					0	0	0			REV__SON-ITSN1|1|fusion	REV__SON-ITSN1|1|fusion	MULTI-MSMS	A375_MHC_IP_R2	2	565.1930541992188	2	564.722027	1127.4295	-0.40212	-0.00022708	0.0815	4.6025E-05	-0.32062	-0.00018106	564.7220619534285	46.015	1.3164	46.78	46.403	47.719	0.76519					81	25	5	0	0	0	0.72507	1	17068	17068		4.756	0	1	144460000	+		64458	28024	46979	47348	62818	62818					-0.1291173726906436
YTDTYTEAY	9	Unmodified	_YTDTYTEAY_					0	0	0		SON-ITSN1|1|fusion;SON-ITSN1|3|fusion;SON-ITSN1|2|fusion;SON-ITSN1|4|fusion;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-5|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-10|SON	SON-ITSN1|1|fusion	SON-ITSN1|1|fusion	MULTI-MSMS	A375_MHC_IP_R1	1	564.1323852539062	2	563.732394	1125.45024	-0.43003	-0.00024242	0.19749	0.00011133	-0.23254	-0.00013109	563.7324430732838	50.649	0.7631	50.649	50.305	51.068	0					37	14	3	0	0	0	0.010057	3	17913	17913;18051;18053		125.62	100.23	1	12816000			64459	29217	46980	47349	62819;62820;62821	62819					-0.10747146889411852
YTDTYTEAY	9	Unmodified	_YTDTYTEAY_					0	0	0		SON-ITSN1|1|fusion;SON-ITSN1|3|fusion;SON-ITSN1|2|fusion;SON-ITSN1|4|fusion;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-5|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-10|SON	SON-ITSN1|1|fusion	SON-ITSN1|1|fusion	MULTI-MSMS	A375_MHC_IP_R2	2	564.1320190429688	2	563.732394	1125.45024	-0.71436	-0.00040271	0.28633	0.00016142	-0.42803	-0.00024129	563.7324594678602	50.144	0.81367	50.898	50.548	51.361	0.75406					48	15	4	0	0	0	0.0098824	3	18791	18791;18881;18939		117.6	97.145	1	18717000			64460	29217	46980	47349	62822;62823;62824	62822					-0.10747146889411852
YTDVSTRY	8	Unmodified	_YTDVSTRY_					0	0	0		ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF	ENSG00000213593|ENST00000278422|TMX2	ENSG00000213593|ENST00000278422|TMX2	MULTI-MSMS	A375_MHC_IP_R1	1	504.6786804199219	2	502.737814	1003.46108	-0.54219	-0.00027258	-0.27514	-0.00013832	-0.81733	-0.0004109	502.73776622585206	27.053	2.5746	27.053	26.828	29.403	0					126	50	6	0	0	0	0.74098	1	8227	8227		22.736	6.8891	1	1874599999.9999998			64461	9573	46981	47350	62825	62825					-0.04051699724482205
YTDVSTRY	8	Unmodified	_YTDVSTRY_					0	0	0		ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF	ENSG00000213593|ENST00000278422|TMX2	ENSG00000213593|ENST00000278422|TMX2	MULTI-MSMS	A375_MHC_IP_R2	2	502.64947509765625	2	502.737814	1003.46108	-1.0012	-0.00050334	-0.10654	-5.3562E-05	-1.1077	-0.0005569	502.73784184023856	26.526	2.2376	27.186	26.957	29.195	0.65992					133	43	7	0	0	0	0.2095	2	9157	9016;9157		66.457	24.362	1	1679699999.9999998			64462	9573	46981	47350	62826;62827	62827					-0.04051699724482205
YTDWIKNKN	9	Unmodified	_YTDWIKNKN_					0	0	0		ENSG00000231738|ENST00000532498|TSPAN19	ENSG00000231738|ENST00000532498|TSPAN19	ENSG00000231738|ENST00000532498|TSPAN19	MULTI-MSMS	A375_MHC_IP_R1	1	591.700927734375	2	591.301113	1180.58767	-0.032626	-1.9291E-05	0.37766	0.00022331	0.34503	0.00020402	591.3014600812027	70.013	0.91473	70.013	69.631	70.545	0					50	17	4	0	0	0	0.050162	1	25343	25343		64.236	64.236	1	19931000			64463	9724	46982	47351	62828	62828					0.004602265006496964
YTDWIKNKN	9	Unmodified	_YTDWIKNKN_					0	0	0		ENSG00000231738|ENST00000532498|TSPAN19	ENSG00000231738|ENST00000532498|TSPAN19	ENSG00000231738|ENST00000532498|TSPAN19	MULTI-MSMS	A375_MHC_IP_R2	2	590.6934204101562	2	591.301113	1180.58767	-0.66193	-0.0003914	-0.296	-0.00017502	-0.95793	-0.00056642	591.3007124608318	81.281	0.76008	82.026	81.572	82.332	0.74474					27	14	3	0	0	0	0.29981	1	30881	30881		30.637	6.616	1	3775700			64464	9724	46982	47351	62829	62829					0.004602265006496964
YTDYRELL	8	Unmodified	_YTDYRELL_					0	0	0			REV__nc|ENSG00000054654|Q8WXH0|SYNE2	REV__nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-SECPEP	A375_MHC_IP_R1	1	537.168701171875	2	536.769114	1071.52368	-0.74023	-0.00039733	0.037968	2.038E-05	-0.70227	-0.00037695	536.7693397745295	42.007	0.4564	42.007	41.828	42.285	0					13	8	2	0	0	0	0.84748	1	14605	14605		28.487	1.6032	1	3510100	+		64465	16407	46983	47352	62830	62830					-0.00922553656278069
YTECTDKWC	9	Unmodified	_YTECTDKWC_					0	0	0			REV__ENST00000323460.9_1_3:196658967-196659150:+|nuORF	REV__ENST00000323460.9_1_3:196658967-196659150:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	575.122802734375	2	574.722992	1147.43143	-0.20965	-0.00012049	0.42234	0.00024273	0.21268	0.00012223	574.7232087990155	50.688	0.55929	50.688	50.305	50.864	0					22	10	3	0	0	0	0.38603	2	17935	17935;17951		25.399	7.253	1	4669900	+		64466	23583	46984	47353	62831;62832	62831					-0.13638723056487834
YTECTDKWC	9	Unmodified	_YTECTDKWC_					0	0	0			REV__ENST00000323460.9_1_3:196658967-196659150:+|nuORF	REV__ENST00000323460.9_1_3:196658967-196659150:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	574.2294921875	2	574.722992	1147.43143	-0.20965	-0.00012049	0.42234	0.00024273	0.21268	0.00012223	574.7232087990155	50.688	0.55929	50.688	50.305	50.864	0					22	10	3	0	0	0	0.74412	1	17866	17866		6.2058	0	1	4669900	+		64467	23583	46984	47353	62833	62833					-0.13638723056487834
YTECTDKWC	9	Unmodified	_YTECTDKWC_					0	0	0			REV__ENST00000323460.9_1_3:196658967-196659150:+|nuORF	REV__ENST00000323460.9_1_3:196658967-196659150:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	575.1232299804688	2	574.722992	1147.43143	-0.4198	-0.00024127	0.34355	0.00019744	-0.07625	-4.3823E-05	574.7231444302687	50.075	0.56001	50.829	50.599	51.159	0.75406					22	10	3	0	0	0	0.38603	2	18850	18808;18850		25.399	7.253	1	4246900	+		64468	23583	46984	47353	62834;62835	62835					-0.13638723056487834
YTEDCHSCH	9	Unmodified	_YTEDCHSCH_					0	0	0			REV__nc|ENSG00000100038|O95985-3|TOP3B	REV__nc|ENSG00000100038|O95985-3|TOP3B	MULTI-SECPEP	A375_MHC_IP_R1	1	1094.675048828125	1	1094.36661	1093.35933	0.042772	4.6808E-05	-2.35	-0.0025717	-2.3072	-0.0025249	1094.3662694004422	119.26	1.5734	119.26	118.42	120	0					42	30	2	0	0	0	0.75466	1	43705	43705		7.9102	5.8504	1	98632000	+		64469	17044	46985	47354	62836	62836					-0.18361637410203002
YTEDSPGLK	9	Unmodified	_YTEDSPGLK_					0	0	0		ENSG00000106803|ENST00000223641|SEC61B	ENSG00000106803|ENST00000223641|SEC61B	ENSG00000106803|ENST00000223641|SEC61B	MULTI-MSMS	A375_MHC_IP_R1	1	505.6448974609375	2	505.245472	1008.47639	-0.52301	-0.00026425	-0.24368	-0.00012312	-0.76669	-0.00038736	505.245268614241	24.422	0.50409	24.422	24.245	24.749	0					11	9	2	0	0	0	0.29123	1	6960	6960		31.268	4.3847	1	5095600			64470	2714	46986	47355	62837	62837					-0.027508329272791343
YTEDSPGLK	9	Unmodified	_YTEDSPGLK_					0	0	0		ENSG00000106803|ENST00000223641|SEC61B	ENSG00000106803|ENST00000223641|SEC61B	ENSG00000106803|ENST00000223641|SEC61B	MULTI-MSMS	A375_MHC_IP_R2	2	505.644775390625	2	505.245472	1008.47639	-0.96007	-0.00048507	-0.25929	-0.00013101	-1.2194	-0.00061608	505.24523527094294	23.847	0.66172	24.477	24.283	24.944	0.63014					15	12	2	0	0	0	0.19747	1	7765	7765		38.176	11.292	1	3592000			64471	2714	46986	47355	62838	62838					-0.027508329272791343
YTEDYTRS	8	Unmodified	_YTEDYTRS_					0	0	0			REV__nc|ENSG00000058272|O14974-5|PPP1R12A	REV__nc|ENSG00000058272|O14974-5|PPP1R12A	MSMS	A375_MHC_IP_R1	1	517.6647338867188	2	517.724904	1033.43525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.048	1	27.048	26.548	27.548	0								0	0	0	0.16876	1	8144	8144		34.102	0	1		+		64472	16431	46987	47356	62839	62839					-0.08012593966759596
YTEEDAASY	9	Unmodified	_YTEEDAASY_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	A375_MHC_IP_R1	1	525.6627807617188	2	524.708919	1047.40329	-0.35286	-0.00018515	-0.068425	-3.5903E-05	-0.42128	-0.00022105	524.7088407145015	35.291	1.0714	35.291	34.861	35.932	0					60	20	4	0	0	0	0.018481	3	11637	11637;11740;11914		85.357	55.132	1	72027000			64473	2847	46988	47357	62840;62841;62842	62840					-0.11852006440562945
YTEEDAASY	9	Unmodified	_YTEEDAASY_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	A375_MHC_IP_R2	2	524.6644897460938	2	524.708919	1047.40329	-0.70364	-0.0003692	-0.25518	-0.0001339	-0.95882	-0.0005031	524.708740310173	34.652	1.367	35.415	35.068	36.435	0.76338					73	26	5	0	0	0	0.0025821	5	12610	12447;12567;12604;12610;12684		139.54	95.137	1	84001000			64474	2847	46988	47357	62843;62844;62845;62846;62847	62846					-0.11852006440562945
YTEEDAVSY	9	Unmodified	_YTEEDAVSY_					0	0	0		ENSG00000188191|ENST00000537384|PRKAR1B	ENSG00000188191|ENST00000537384|PRKAR1B	ENSG00000188191|ENST00000537384|PRKAR1B	MULTI-MSMS	A375_MHC_IP_R1	1	539.12451171875	2	538.724569	1075.43459	-0.52203	-0.00028123	0.41126	0.00022156	-0.11077	-5.9673E-05	538.7246190306114	47.693	0.75616	47.693	47.366	48.122	0					23	14	2	0	0	0	0.0093345	1	16796	16796		104.8	64.351	1	6678500			64475	8891	46989	47358	62848	62848					-0.1001143340647559
YTEEDAVSY	9	Unmodified	_YTEEDAVSY_					0	0	0		ENSG00000188191|ENST00000537384|PRKAR1B	ENSG00000188191|ENST00000537384|PRKAR1B	ENSG00000188191|ENST00000537384|PRKAR1B	MULTI-MSMS	A375_MHC_IP_R2	2	539.1241455078125	2	538.724569	1075.43459	-0.67281	-0.00036246	0.6309	0.00033988	-0.041902	-2.2574E-05	538.7246089036643	47.237	0.76246	47.998	47.462	48.225	0.76128					30	14	3	0	0	0	0.03063	1	17676	17676		74.423	38.379	1	8674000			64476	8891	46989	47358	62849	62849					-0.1001143340647559
YTEEEDFEC	9	Unmodified	_YTEEEDFEC_					0	0	0		ENSG00000149054|ENST00000278319|ZNF215	ENSG00000149054|ENST00000278319|ZNF215	ENSG00000149054|ENST00000278319|ZNF215	MULTI-MSMS	A375_MHC_IP_R1	1	583.2168579101562	2	582.705519	1163.39649	-0.23285	-0.00013568	0.25189	0.00014678	0.019042	1.1096E-05	582.7056462127404	50.757	0.40611	50.757	50.408	50.814	0					12	7	2	0	0	0	0.6898	1	17922	17922		7.9102	3.1541	1	2365700			64477	5779	46990	47359	62850	62850					-0.17867687383431985
YTEEEDFEC	9	Unmodified	_YTEEEDFEC_					0	0	0		ENSG00000149054|ENST00000278319|ZNF215	ENSG00000149054|ENST00000278319|ZNF215	ENSG00000149054|ENST00000278319|ZNF215	MULTI-MSMS	A375_MHC_IP_R2	2	583.1056518554688	2	582.705519	1163.39649	-0.59549	-0.000347	0.90017	0.00052453	0.30468	0.00017754	582.7058702574325	50.075	0.50849	50.829	50.65	51.159	0.75406					12	9	2	0	0	0	0.64808	1	18862	18862		11.64	4.3511	1	1985800			64478	5779	46990	47359	62851	62851					-0.17867687383431985
YTEEEDFEC	9	Unmodified	_YTEEEDFEC_					0	0	0		ENSG00000149054|ENST00000278319|ZNF215	ENSG00000149054|ENST00000278319|ZNF215	ENSG00000149054|ENST00000278319|ZNF215	MULTI-SECPEP	A375_MHC_IP_R2	2	389.2061462402344	3	388.806105	1163.39649	-0.36289	-0.00014109	0.837	0.00032543	0.47411	0.00018434	388.8063720978347	50.117	0.45788	50.871	50.65	51.108	0.75406					17	8	3	0	0	0	0.80332	1	18879	18879		2.4985	1.5362	1	1675700			64479	5779	46990	47359	62852	62852					-0.17867687383431985
YTEHQVVSSDF	11	Unmodified	_YTEHQVVSSDF_					0	0	0		ENSG00000111640|ENST00000229239|GAPDH;nc|ENSG00000111640|P04406-2|GAPDH;ENST00000466525.1_1_12:6646524-6647333:+|nuORF;ENST00000452570.1_1_X:39646388-39646742:-|nuORF	ENSG00000111640|ENST00000229239|GAPDH	ENSG00000111640|ENST00000229239|GAPDH	MULTI-MSMS	A375_MHC_IP_R2	2	656.6957397460938	2	656.296224	1310.5779	-0.91157	-0.00059826	-0.22478	-0.00014752	-1.1363	-0.00074578	656.2959880749945	44.485	0.40541	45.254	45.035	45.441	0.7691					12	7	2	0	0	0	0.11652	1	16625	16625		67.081	37.24	1	1623700			64480	3003	46991	47360	62853	62853					-0.06497006295376195
YTEIQSPIKA	10	Unmodified	_YTEIQSPIKA_					0	0	0		ENST00000234170.9_1_2:37443333-37443494:-|nuORF	ENST00000234170.9_1_2:37443333-37443494:-|nuORF	ENST00000234170.9_1_2:37443333-37443494:-|nuORF	MSMS	A375_MHC_IP_R1	1	575.3914794921875	2	575.311146	1148.60774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.739	1	95.739	95.239	96.239	0								0	0	0	0.15332	1	35189	35189		10.074	0.72649	1				64481	10153	46992	47361	62854	62854					0.039379774406370416
YTEKDPSYF	9	Unmodified	_YTEKDPSYF_					0	0	0		ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL	ENSG00000138078|ENST00000409411|PREPL	ENSG00000138078|ENST00000409411|PREPL	MULTI-MSMS	A375_MHC_IP_R2	2	575.172119140625	2	575.258579	1148.50261	-0.11352	-6.5306E-05	0.1241	7.1389E-05	0.010575	6.0831E-06	575.2586981896619	92.173	1.9239	92.912	92.483	94.407	0.73902					93	37	4	0	0	0	0.25276	1	35450	35450		34.102	0	1	43945000			64482	4952	46993	47362	62855	62855					-0.06570563755826697
YTEKGVAAYS	10	Unmodified	_YTEKGVAAYS_					0	0	0		tr|U7STW0|U7STW0_FUSNUHydroxylaminereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hcpPE=3SV=1	tr|U7STW0|U7STW0_FUSNUHydroxylaminereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hcpPE=3SV=1	tr|U7STW0|U7STW0_FUSNUHydroxylaminereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hcpPE=3SV=1	MULTI-MSMS	A375_MHC_IP_R1	1	545.1661987304688	2	544.766571	1087.51859	-0.75793	-0.0004129	0.2767	0.00015074	-0.48123	-0.00026216	544.7668983113329	25.806	0.30276	25.806	25.664	25.966	0					9	5	2	0	0	0	0.33265	1	7624	7624		38.176	2.1314	1	3236900			64483	29718	46994	47363	62856	62856					-0.021668575189096373
YTEKNGQLIY	10	Unmodified	_YTEKNGQLIY_					0	0	0		nc|ENSG00000288674|P49810-2|PSEN2;nc|ENSG00000288674|P49810-3|PSEN2;ENSG00000143801|ENST00000366783|PSEN2	nc|ENSG00000288674|P49810-2|PSEN2	nc|ENSG00000288674|P49810-2|PSEN2	MULTI-SECPEP	A375_MHC_IP_R1	1	615.2137451171875	2	614.814053	1227.61355	-0.60726	-0.00037335	0.62759	0.00038585	0.020329	1.2498E-05	614.8144860967261	41.215	0.71055	41.215	40.963	41.674	0					39	13	4	0	0	0	0.095473	1	14181	14181		87.258	34.99	1	33441000			64484	5435	46995	47364	62857	62857					0.008850759523056695
YTEKNGQLIY	10	Unmodified	_YTEKNGQLIY_					0	0	0		nc|ENSG00000288674|P49810-2|PSEN2;nc|ENSG00000288674|P49810-3|PSEN2;ENSG00000143801|ENST00000366783|PSEN2	nc|ENSG00000288674|P49810-2|PSEN2	nc|ENSG00000288674|P49810-2|PSEN2	MULTI-SECPEP	A375_MHC_IP_R2	2	615.2135620117188	2	614.814053	1227.61355	-0.68957	-0.00042396	0.48983	0.00030115	-0.19975	-0.00012281	614.8144191060122	40.463	0.76235	41.237	40.93	41.692	0.77451					38	14	4	0	0	0	0.055108	1	14954	14954		87.258	54.473	1	30001000			64485	5435	46995	47364	62858	62858					0.008850759523056695
YTEKQIGY	8	Unmodified	_YTEKQIGY_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2;ENST00000600199.1_1_19:50270291-50299453:+|nuORF;nc|ENSG00000196961|O95782|AP2A1;ENSG00000196961|ENST00000354293|AP2A1	nc|ENSG00000183020|O94973-3|AP2A2;nc|ENSG00000196961|O95782|AP2A1	nc|ENSG00000196961|O95782|AP2A1	MULTI-MSMS	A375_MHC_IP_R1	1	501.6846008300781	2	501.250557	1000.48656	-0.68194	-0.00034182	0.017402	8.7229E-06	-0.66454	-0.0003331	501.2505199271033	29.022	0.40699	29.022	28.845	29.252	0					22	7	4	0	0	0	0.16884	1	9029	9029		72.968	26.047	1	15294000			64486	8455;9095	46996	47365	62859	62859					-0.013662252020480992
YTEKQIGY	8	Unmodified	_YTEKQIGY_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2;ENST00000600199.1_1_19:50270291-50299453:+|nuORF;nc|ENSG00000196961|O95782|AP2A1;ENSG00000196961|ENST00000354293|AP2A1	nc|ENSG00000183020|O94973-3|AP2A2;nc|ENSG00000196961|O95782|AP2A1	nc|ENSG00000196961|O95782|AP2A1	MULTI-MSMS	A375_MHC_IP_R2	2	501.6844482421875	2	501.250557	1000.48656	-1.0373	-0.00051993	0.21414	0.00010734	-0.82312	-0.00041259	501.25056327759467	28.404	0.405	29.083	28.858	29.263	0.67857					17	7	3	0	0	0	0.48656	1	9759	9759		49.554	11.403	1	15654000			64487	8455;9095	46996	47365	62860	62860					-0.013662252020480992
YTEKVHTSLY	10	Unmodified	_YTEKVHTSLY_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4;ENST00000604740.5_1_6:112443215-112450276:-|nuORF	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-MSMS	A375_MHC_IP_R1	1	414.9460144042969	3	414.211794	1239.61355	-0.014187	-5.8766E-06	-0.042582	-1.7638E-05	-0.056769	-2.3514E-05	414.211754812707	30.149	0.5541	30.149	29.949	30.503	0					19	10	3	0	0	0	0.66857	1	9597	9597		15.739	4.8397	1	6478600			64488	3109	46997	47366	62861	62861					0.0033307595228961873
YTEKVHTSLY	10	Unmodified	_YTEKVHTSLY_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4;ENST00000604740.5_1_6:112443215-112450276:-|nuORF	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-SECPEP	A375_MHC_IP_R2	2	414.9459533691406	3	414.211794	1239.61355	-0.72525	-0.00030041	0.16509	6.8384E-05	-0.56016	-0.00023202	414.21192490791555	29.442	0.45462	30.141	29.93	30.385	0.69872					23	8	4	0	0	0	0.51493	1	10275	10275		32.898	10.123	1	5898500			64489	3109	46997	47366	62862	62862					0.0033307595228961873
YTELEAIMY	9	Unmodified	_YTELEAIMY_					0	0	0		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000512029.1_1_5:118832263-118835290:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	566.7235717773438	2	566.765183	1131.51581	-0.013926	-7.8926E-06	-0.34407	-0.00019501	-0.358	-0.0002029	566.7650891606738	112.62	1.3712	112.62	112.18	113.55	0					66	26	4	0	0	0	0.63811	1	41518	41518		12.532	0.89125	1	14922000			64490	4532	46998	47367	62863	62863					-0.04468448968054872
YTELEAIMY	9	Unmodified	_YTELEAIMY_					0	0	0		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000512029.1_1_5:118832263-118835290:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	566.7242431640625	2	566.765183	1131.51581	-0.19705	-0.00011168	-0.41592	-0.00023573	-0.61298	-0.00034742	566.7649642508129	111.81	1.3787	112.53	112.1	113.48	0.72458					54	26	3	0	0	0	0.042197	1	42083	42083		67.344	45.597	1	16078000			64491	4532	46998	47367	62864	62864					-0.04468448968054872
YTELEAIMY	9	Unmodified	_YTELEAIMY_					0	0	0		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000512029.1_1_5:118832263-118835290:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	566.765183	1131.51581	-0.013926	-7.8926E-06	-0.34407	-0.00019501	-0.358	-0.0002029	566.7650891606738	112.62	1.3712	112.62	112.18	113.55	0	0.042346	4.4501E-05	NaN	67.344	66	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14922000			64492	4532	46998	47367							-0.04468448968054872
YTELEAIMY	9	Oxidation (M)	_YTELEAIM(Oxidation (M))Y_		YTELEAIM(1)Y		YTELEAIM(78)Y	0	0	1		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000512029.1_1_5:118832263-118835290:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MSMS	A375_MHC_IP_R1	1	574.7197265625	2	574.76264	1147.51073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.796	1	94.796	94.296	95.296	0								0	0	0	0.026562	1	34842	34842		77.984	54.836	1				64493	4532	46998	47368	62865	62865		235			-0.057127528306864406
YTELEAIMY	9	Oxidation (M)	_YTELEAIM(Oxidation (M))Y_		YTELEAIM(1)Y		YTELEAIM(150)Y	0	0	1		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000512029.1_1_5:118832263-118835290:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	575.1627807617188	2	574.76264	1147.51073	-0.1468	-8.4378E-05	-0.048489	-2.787E-05	-0.19529	-0.00011225	574.762513364612	89.193	1.4706	89.193	88.764	90.235	0					80	28	4	0	0	0	0.010819	1	32691	32691		146.01	91.234	1	22471000			64494	4532	46998	47368	62866	62866		235			-0.057127528306864406
YTELEAIMY	9	Oxidation (M)	_YTELEAIM(Oxidation (M))Y_		YTELEAIM(1)Y		YTELEAIM(110)Y	0	0	1		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000512029.1_1_5:118832263-118835290:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	574.7335205078125	2	574.76264	1147.51073	-0.13807	-7.9359E-05	-0.50036	-0.00028759	-0.63843	-0.00036695	574.7623935526295	88.641	1.3607	89.373	88.825	90.186	0.7318					67	26	4	0	0	0	0.0096264	1	33818	33818		109.63	75.527	1	26123000			64495	4532	46998	47368	62867	62867		235			-0.057127528306864406
YTELEAIMY	9	Oxidation (M)	_YTELEAIM(Oxidation (M))Y_		YTELEAIM(1)Y		YTELEAIM(85)Y	0	0	1		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000512029.1_1_5:118832263-118835290:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	575.162353515625	2	574.76264	1147.51073	-0.029414	-1.6906E-05	-0.29002	-0.00016669	-0.31943	-0.0001836	574.7625902872741	94.339	3.2002	95.084	93.853	97.053	0.74473					93	62	2	0	0	0	0.033126	1	35515	35515		85.357	23.999	1	2876900			64496	4532	46998	47368	62868	62868		235			-0.057127528306864406
YTELEAIMYA	10	Oxidation (M)	_YTELEAIM(Oxidation (M))YA_		YTELEAIM(1)YA		YTELEAIM(44)YA	0	0	1		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000512029.1_1_5:118832263-118835290:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	610.7416381835938	2	610.281197	1218.54784	-0.40325	-0.00024609	-0.13321	-8.1296E-05	-0.53646	-0.00032739	610.2812441267657	92.598	0.60882	93.337	93.038	93.646	0.73902					22	11	2	0	0	0	0.25271	1	35148	35148		43.858	23.405	1	2239200			64497	4532	46999	47369	62869	62869		235			-0.05269081284927779
YTELGQRRQ	9	Unmodified	_YTELGQRRQ_					0	0	0			REV__SNX24|p.E72K|1|0.38|ENSG00000064652|chr5:122946124-122946124|G/A|missense_variant	REV__SNX24|p.E72K|1|0.38|ENSG00000064652|chr5:122946124-122946124|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	575.1622314453125	2	575.801811	1149.58907	-0.016749	-9.644E-06	2.183	0.001257	2.1662	0.0012473	575.8030652870225	93.088	0.61288	93.088	92.871	93.484	0					18	11	2	0	0	0	0.73363	1	34259	34259		15.847	5.7733	1	1357100	+		64498	16481	47000	47370	62870	62870					0.020258605894241555
YTELLAQVY	9	Unmodified	_YTELLAQVY_					0	0	0		ENST00000487525.5_1_17:56772519-56783250:+|nuORF;ENST00000487921.5_1_17:56769962-56783250:+|nuORF;ENST00000475762.5_1_17:56772326-56801433:+|nuORF;ENSG00000108384|ENST00000337432|RAD51C	ENST00000487525.5_1_17:56772519-56783250:+|nuORF	ENST00000487525.5_1_17:56772519-56783250:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	550.6171264648438	2	550.28714	1098.55973	-0.50449	-0.00027761	0.50631	0.00027862	0.0018218	1.0025E-06	550.287352183225	104.46	1.0655	104.46	104.13	105.2	0					46	20	5	0	0	0	0.10411	1	38453	38453		49.933	23.049	1	5861500			64499	2795	47001	47371	62871	62871					0.014389035205795153
YTELLAQVY	9	Unmodified	_YTELLAQVY_					0	0	0		ENST00000487525.5_1_17:56772519-56783250:+|nuORF;ENST00000487921.5_1_17:56769962-56783250:+|nuORF;ENST00000475762.5_1_17:56772326-56801433:+|nuORF;ENSG00000108384|ENST00000337432|RAD51C	ENST00000487525.5_1_17:56772519-56783250:+|nuORF	ENST00000487525.5_1_17:56772519-56783250:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	550.6870727539062	2	550.28714	1098.55973	-0.7473	-0.00041123	0.28917	0.00015913	-0.45813	-0.0002521	550.2872624330406	103.72	1.0671	104.49	104.14	105.21	0.76428					44	20	3	0	0	0	0.026268	1	39335	39335		78.149	45.844	1	6293100			64500	2795	47001	47371	62872	62872					0.014389035205795153
YTENVTYTC	9	Unmodified	_YTENVTYTC_					0	0	0			REV__nc|ENSG00000163297|P58335-3|ANTXR2	REV__nc|ENSG00000163297|P58335-3|ANTXR2	MULTI-SECPEP	A375_MHC_IP_R2	2	1092.85302734375	1	1093.45065	1092.44338	0.10617	0.00011609	4.4735	0.0048915	4.5796	0.0050076	1093.45672365489	120.83	0.50358	121.28	121.02	121.52	0.44488					12	9	2	0	0	0	0.75466	1	46119	46119		1.8442	0	1	31822000	+		64501	20349	47002	47372	62873	62873					-0.09914783041631381
YTEQDSSMI	9	Unmodified	_YTEQDSSMI_					0	0	0			REV__nc|ENSG00000143702|Q5SW79-3|CEP170	REV__nc|ENSG00000143702|Q5SW79-3|CEP170	MULTI-MSMS	A375_MHC_IP_R1	1	1073.47607421875	1	1073.44557	1072.43829	-0.042115	-4.5208E-05	-1.0499	-0.001127	-1.092	-0.0011723	1073.444777165695	119.66	1.5697	119.66	119.23	120.8	0					45	30	2	0	0	0	0.6898	1	44606	44606		7.9102	0	1	146320000	+		64502	19381	47003	47373	62874	62874					-0.09503086904260272
YTEQSQIKGY	10	Unmodified	_YTEQSQIKGY_					0	0	0		ENSG00000205155|ENST00000587708|PSENEN	ENSG00000205155|ENST00000587708|PSENEN	ENSG00000205155|ENST00000587708|PSENEN	MULTI-SECPEP	A375_MHC_IP_R1	1	608.6617431640625	2	608.79586	1215.57717	-0.23586	-0.00014359	0.014062	8.5611E-06	-0.2218	-0.00013503	608.7958727960429	28.617	0.35437	28.617	28.491	28.845	0					15	6	3	0	0	0	0.023912	1	8868	8868		103.82	43.75	1	5774900			64503	9498	47004	47374	62875	62875					-0.021998009443905175
YTEQSQIKGY	10	Unmodified	_YTEQSQIKGY_					0	0	0		ENSG00000205155|ENST00000587708|PSENEN	ENSG00000205155|ENST00000587708|PSENEN	ENSG00000205155|ENST00000587708|PSENEN	MULTI-SECPEP	A375_MHC_IP_R2	2	608.684814453125	2	608.79586	1215.57717	-0.60118	-0.000366	0.5848	0.00035602	-0.016381	-9.9728E-06	608.795814975914	28.053	0.45692	28.731	28.553	29.01	0.67857					16	8	3	0	0	0	0.83447	1	9590	9590		18.373	6.1324	1	5005700			64504	9498	47004	47374	62876	62876					-0.021998009443905175
YTEQYLDSM	9	Unmodified	_YTEQYLDSM_					0	0	0			REV__ZDHHC4|p.V221G|1|0.4|ENSG00000136247|chr7:6585181-6585181|T/G|missense_variant	REV__ZDHHC4|p.V221G|1|0.4|ENSG00000136247|chr7:6585181-6585181|T/G|missense_variant	MSMS	A375_MHC_IP_R1	1	575.1626586914062	2	575.242072	1148.46959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.532	1	94.532	94.032	95.032	0								0	0	0	0.15069	1	34747	34747		20.454	1.1966	1		+		64505	18925	47005	47375	62877	62877					-0.09870513870168907
YTERAVFRY	9	Unmodified	_YTERAVFRY_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-MSMS	A375_MHC_IP_R1	1	402.6087646484375	3	402.208495	1203.60366	-0.22965	-9.2366E-05	0.87952	0.00035375	0.64987	0.00026138	402.20876058026033	39.169	0.86154	39.169	38.933	39.794	0					46	16	4	0	0	0	0.14922	1	13354	13354		38.615	31.513	1	10980000			64506	2487	47006	47376	62878	62878					0.009999327375680878
YTERAVFRY	9	Unmodified	_YTERAVFRY_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-MSMS	A375_MHC_IP_R1	1	603.2089233398438	2	602.809105	1203.60366	-0.23454	-0.00014138	0.03906	2.3546E-05	-0.19548	-0.00011784	602.8091745090686	39.281	0.71033	39.281	38.882	39.592	0					21	13	2	0	0	0	0.17338	1	13391	13391		39.95	19.496	1	4485800			64507	2487	47006	47376	62879	62879					0.009999327375680878
YTERAVFRY	9	Unmodified	_YTERAVFRY_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-MSMS	A375_MHC_IP_R2	2	603.208740234375	2	602.809105	1203.60366	-0.83321	-0.00050227	-0.030212	-1.8212E-05	-0.86342	-0.00052048	602.8091005433972	38.481	0.71269	39.255	38.895	39.607	0.77451					36	13	4	0	0	0	0.10622	1	14148	14148		49.554	30.297	1	4068400			64508	2487	47006	47376	62880	62880					0.009999327375680878
YTERAVFRY	9	Unmodified	_YTERAVFRY_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-MSMS	A375_MHC_IP_R2	2	402.9429016113281	3	402.208495	1203.60366	-0.37131	-0.00014934	0.33499	0.00013473	-0.036323	-1.4609E-05	402.20862676944745	38.4	0.71332	39.175	38.843	39.556	0.77451					40	13	5	0	0	0	0.64136	1	14203	14203		8.4443	4.2548	1	11466000			64509	2487	47006	47376	62881	62881					0.009999327375680878
YTERDASGMLY	11	Oxidation (M)	_YTERDASGM(Oxidation (M))LY_		YTERDASGM(1)LY		YTERDASGM(96)LY	0	0	1		nc|ENSG00000133083|O15075-3|DCLK1;nc|ENSG00000133083|O15075-4|DCLK1;nc|ENSG00000133083|O15075-2|DCLK1;ENSG00000133083|ENST00000360631|DCLK1	nc|ENSG00000133083|O15075-3|DCLK1	nc|ENSG00000133083|O15075-3|DCLK1	MULTI-MSMS	A375_MHC_IP_R1	1	661.6897583007812	2	661.290085	1320.56562	-0.54274	-0.00035891	-0.44204	-0.00029231	-0.98478	-0.00065123	661.2899959649951	36.191	0.60776	36.191	35.881	36.489	0					27	11	4	0	0	0	0.0045927	1	12064	12064		96.034	75.581	1	9763000			64510	4483	47007	47377	62882	62882		234			-0.08184366030059209
YTERDASGMLY	11	Oxidation (M)	_YTERDASGM(Oxidation (M))LY_		YTERDASGM(1)LY		YTERDASGM(110)LY	0	0	1		nc|ENSG00000133083|O15075-3|DCLK1;nc|ENSG00000133083|O15075-4|DCLK1;nc|ENSG00000133083|O15075-2|DCLK1;ENSG00000133083|ENST00000360631|DCLK1	nc|ENSG00000133083|O15075-3|DCLK1	nc|ENSG00000133083|O15075-3|DCLK1	MULTI-MSMS	A375_MHC_IP_R2	2	661.6895141601562	2	661.290085	1320.56562	-1.1047	-0.00073053	0.32964	0.00021799	-0.77506	-0.00051254	661.2902975639826	35.502	0.50674	36.266	36.03	36.537	0.76338					26	9	4	0	0	0	0.00090302	1	12860	12860		105.35	83.755	1	8942900			64511	4483	47007	47377	62883	62883		234			-0.08184366030059209
YTERDASGMLY	11	Unmodified	_YTERDASGMLY_					0	0	0		nc|ENSG00000133083|O15075-3|DCLK1;nc|ENSG00000133083|O15075-4|DCLK1;nc|ENSG00000133083|O15075-2|DCLK1;ENSG00000133083|ENST00000360631|DCLK1	nc|ENSG00000133083|O15075-3|DCLK1	nc|ENSG00000133083|O15075-3|DCLK1	MULTI-MSMS	A375_MHC_IP_R1	1	653.6925048828125	2	653.292627	1304.5707	-0.27682	-0.00018084	-0.27949	-0.00018259	-0.55631	-0.00036343	653.2925367720513	51.405	0.60892	51.405	51.119	51.728	0					29	11	4	0	0	0	0.36994	1	18235	18235		41.347	25.5	1	5270500			64512	4483	47007	47378	62884	62884					-0.06940062167427641
YTERDASGMLY	11	Unmodified	_YTERDASGMLY_					0	0	0		nc|ENSG00000133083|O15075-3|DCLK1;nc|ENSG00000133083|O15075-4|DCLK1;nc|ENSG00000133083|O15075-2|DCLK1;ENSG00000133083|ENST00000360631|DCLK1	nc|ENSG00000133083|O15075-3|DCLK1	nc|ENSG00000133083|O15075-3|DCLK1	MULTI-MSMS	A375_MHC_IP_R2	2	653.6922607421875	2	653.292627	1304.5707	-0.9077	-0.00059299	0.033393	2.1816E-05	-0.87431	-0.00057118	653.2927245510527	50.787	0.55514	51.541	51.311	51.866	0.75406					28	10	4	0	0	0	0.2385	1	19097	19097		51.488	35.641	1	7350500			64513	4483	47007	47378	62885	62885					-0.06940062167427641
YTERRQPLY	9	Unmodified	_YTERRQPLY_					0	0	0		nc|ENSG00000113719|Q969X5-2|ERGIC1;ENSG00000113719|ENST00000393784|ERGIC1	nc|ENSG00000113719|Q969X5-2|ERGIC1	nc|ENSG00000113719|Q969X5-2|ERGIC1	MULTI-SECPEP	A375_MHC_IP_R1	1	409.6156311035156	3	409.21565	1224.62512	-0.25301	-0.00010354	0.46782	0.00019144	0.21481	8.7903E-05	409.21577120470863	24.27	0.91031	24.27	23.787	24.698	0					27	17	3	0	0	0	0.40495	1	6864	6864		44.392	29.143	1	16312000			64514	3176	47008	47379	62886	62886					0.021793177662857488
YTERRQPLY	9	Unmodified	_YTERRQPLY_					0	0	0		nc|ENSG00000113719|Q969X5-2|ERGIC1;ENSG00000113719|ENST00000393784|ERGIC1	nc|ENSG00000113719|Q969X5-2|ERGIC1	nc|ENSG00000113719|Q969X5-2|ERGIC1	MULTI-SECPEP	A375_MHC_IP_R2	2	409.6155700683594	3	409.21565	1224.62512	-0.27158	-0.00011114	0.14362	5.8774E-05	-0.12796	-5.2363E-05	409.21564956972225	23.576	0.35453	24.206	24.029	24.384	0.63014					16	6	3	0	0	0	0.22619	1	7614	7614		44.392	33.592	1	19238000			64515	3176	47008	47379	62887	62887					0.021793177662857488
YTERRQPLY	9	Unmodified	_YTERRQPLY_					0	0	0		nc|ENSG00000113719|Q969X5-2|ERGIC1;ENSG00000113719|ENST00000393784|ERGIC1	nc|ENSG00000113719|Q969X5-2|ERGIC1	nc|ENSG00000113719|Q969X5-2|ERGIC1	MULTI-SECPEP	A375_MHC_IP_R2	2	613.7196655273438	2	613.319837	1224.62512	-0.84367	-0.00051744	0.18342	0.0001125	-0.66025	-0.00040494	613.3199420047538	23.576	0.25399	24.206	24.079	24.333	0.63014					9	4	3	0	0	0	0.46121	1	7621	7621		41.84	41.84	1	5249500			64516	3176	47008	47379	62888	62888					0.021793177662857488
YTESIPDLY	9	Unmodified	_YTESIPDLY_					0	0	0		DNAH5|p.F2432I|1|0.46|ENSG00000039139|chr5:13811760-13811760|A/T|missense_variant	DNAH5|p.F2432I|1|0.46|ENSG00000039139|chr5:13811760-13811760|A/T|missense_variant	DNAH5|p.F2432I|1|0.46|ENSG00000039139|chr5:13811760-13811760|A/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	550.6868286132812	2	550.760955	1099.50736	-0.52008	-0.00028644	-0.064502	-3.5525E-05	-0.58458	-0.00032196	551.2624051278232	104.18	0.50995	104.18	103.93	104.44	0					15	9	2	0	0	0	0.32899	1	38318	38318		28.487	11.545	1	1479500			64517	764	47009	47380	62889	62889					-0.03841679613015003
YTESIPDLY	9	Unmodified	_YTESIPDLY_					0	0	0		DNAH5|p.F2432I|1|0.46|ENSG00000039139|chr5:13811760-13811760|A/T|missense_variant	DNAH5|p.F2432I|1|0.46|ENSG00000039139|chr5:13811760-13811760|A/T|missense_variant	DNAH5|p.F2432I|1|0.46|ENSG00000039139|chr5:13811760-13811760|A/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	550.6873779296875	2	550.760955	1099.50736	-0.75332	-0.0004149	0.59662	0.00032859	-0.15671	-8.6308E-05	550.7611409207328	103.54	0.55862	104.31	103.99	104.55	0.76428					22	10	3	0	0	0	0.2264	1	39225	39225		36.044	12.896	1	1324500			64518	764	47009	47380	62890	62890					-0.03841679613015003
YTESLLGQ	8	Unmodified	_YTESLLGQ_					0	0	0			REV__ENSG00000166508|ENST00000303887|MCM7	REV__ENSG00000166508|ENST00000303887|MCM7	MULTI-MSMS	A375_MHC_IP_R2	2	910.4685668945312	1	910.451639	909.444362	-0.36886	-0.00033583	1.7769	0.0016178	1.408	0.001282	910.4505049428328	121.02	0.30208	121.46	121.22	121.52	0.44488					7	5	2	0	0	0	0.77603	1	46179	46179		9.3474	0	1	39248000	+		64519	20682	47010	47381	62891	62891					-0.013982006104015454
YTETEPYHNY	10	Unmodified	_YTETEPYHNY_					0	0	0		ENSG00000158545|ENST00000301011|ZC3H18;ENST00000568072.1_1_16:88666261-88675531:+|nuORF	ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	MULTI-MSMS	A375_MHC_IP_R1	1	659.1752319335938	2	658.775125	1315.5357	-0.44231	-0.00029138	0.11186	7.3688E-05	-0.33046	-0.0002177	658.775182887252	31.717	0.86752	31.717	31.414	32.282	0					54	16	5	0	0	0	5.9584E-16	1	10131	10131		233.47	147.14	1	161560000			64520	6311	47011	47382	62892	62892					-0.1094498170375573
YTETEPYHNY	10	Unmodified	_YTETEPYHNY_					0	0	0		ENSG00000158545|ENST00000301011|ZC3H18;ENST00000568072.1_1_16:88666261-88675531:+|nuORF	ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	MULTI-MSMS	A375_MHC_IP_R2	2	659.1749267578125	2	658.775125	1315.5357	-0.94928	-0.00062536	0.16514	0.00010879	-0.78414	-0.00051657	658.7751892909475	31.126	0.76452	31.844	31.567	32.332	0.71857					51	14	6	0	0	0	5.9584E-16	1	10939	10939		233.47	171.87	1	154500000			64521	6311	47011	47382	62893	62893					-0.1094498170375573
YTETLPDLN	9	Unmodified	_YTETLPDLN_					0	0	0			REV__ENSG00000173418|ENST00000334982|NAA20	REV__ENSG00000173418|ENST00000334982|NAA20	MULTI-SECPEP	A375_MHC_IP_R2	2	533.6578979492188	2	533.258579	1064.50261	-1.0499	-0.00055987	-0.26665	-0.0001422	-1.3166	-0.00070207	533.2583778981436	60.184	0.66239	60.931	60.653	61.316	0.74714					20	12	2	0	0	0	0.73008	1	22813	22813		17.113	13.516	1	1824300	+		64522	21221	47012	47383	62894	62894					-0.02706563755782554
YTEVLDLSY	9	Unmodified	_YTEVLDLSY_					0	0	0		ENST00000477418.2_1_1:27206170-27212721:-|nuORF;ENSG00000142751|ENST00000374135|GPN2	ENST00000477418.2_1_1:27206170-27212721:-|nuORF	ENST00000477418.2_1_1:27206170-27212721:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	552.1685180664062	2	551.76878	1101.52301	-0.73095	-0.00040332	0.63622	0.00035105	-0.094731	-5.227E-05	551.7687856173621	105.1	0.45823	105.86	105.62	106.07	0.76308					16	8	2	0	0	0	0.35487	1	39783	39783		36.127	21.289	1	1474500			64523	12441	47013	47384	62895	62895					-0.02369393095978012
YTEVLDLSY	9	Unmodified	_YTEVLDLSY_					0	0	0		ENST00000477418.2_1_1:27206170-27212721:-|nuORF;ENSG00000142751|ENST00000374135|GPN2	ENST00000477418.2_1_1:27206170-27212721:-|nuORF	ENST00000477418.2_1_1:27206170-27212721:-|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		2	551.76878	1101.52301	-0.41162	-0.00022712	1.9242	0.0010617	1.5126	0.00083462	552.2721143664604	105.8	0.50761	105.8	105.6	106.11	0	-0.031736	0.00083271	NaN	29.082	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1318000			64524	12441	47013	47384							-0.02369393095978012
YTFEGARYY	9	Unmodified	_YTFEGARYY_					0	0	0		ENST00000535357.5_1_12:19283009-19360212:+|nuORF;nc|ENSG00000052126|Q9HAU0-7|PLEKHA5;ENST00000539256.5_1_12:19282733-19418734:+|nuORF;nc|ENSG00000052126|Q9HAU0-3|PLEKHA5;nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;nc|ENSG00000052126|Q9HAU0|PLEKHA5;nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5	ENST00000535357.5_1_12:19283009-19360212:+|nuORF	ENST00000535357.5_1_12:19283009-19360212:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	585.6668090820312	2	585.266739	1168.51892	-0.29764	-0.0001742	-0.04263	-2.495E-05	-0.34027	-0.00019915	585.266657190678	59.034	0.35777	59.034	58.836	59.194	0					11	6	2	0	0	0	0.04447	1	21247	21247		66.457	46.042	1	2577000			64525	1239	47014	47385	62896	62896					-0.05859437799040279
YTFLCICVC	9	Unmodified	_YTFLCICVC_					0	0	0		ENST00000367210.2_2_1:203771530-203771572:+|nuORF	ENST00000367210.2_2_1:203771530-203771572:+|nuORF	ENST00000367210.2_2_1:203771530-203771572:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	532.1876831054688	2	532.734317	1063.45408	-0.72069	-0.00038394	1.2109	0.00064511	0.49026	0.00026118	532.7338211525318	45.675	0.35073	46.44	46.252	46.603	0.76519					14	6	3	0	0	0	0.75466	1	17074	17074		7.9102	3.5809	1	738290			64526	11083	47015	47386	62897	62897					-0.07510795192547448
YTFLDPKML	9	Unmodified	_YTFLDPKML_					0	0	0			REV__nc|ENSG00000171509|Q9HBX9-4|RXFP1	REV__nc|ENSG00000171509|Q9HBX9-4|RXFP1	MULTI-SECPEP	A375_MHC_IP_R2	2	376.63995361328125	3	376.531699	1126.57327	-0.080051	-3.0142E-05	3.4259	0.0012899	3.3458	0.0012598	376.8674384690992	19.748	0.30204	20.358	20.197	20.499	0.61029					9	5	2	0	0	0	0.78348	1	6045	6045		0.96228	0	1	824260	+		64527	27358	47016	47387	62898	62898					0.015044380281779013
YTFLQKSYQ	9	Unmodified	_YTFLQKSYQ_					0	0	0		RGS22|p.L469Tfs*13|1|0.2|ENSG00000132554|chr8:100062701-100062702|-/TA|frameshift_variant	RGS22|p.L469Tfs*13|1|0.2|ENSG00000132554|chr8:100062701-100062702|-/TA|frameshift_variant	RGS22|p.L469Tfs*13|1|0.2|ENSG00000132554|chr8:100062701-100062702|-/TA|frameshift_variant	MSMS	A375_MHC_IP_R1	1	589.2460327148438	2	589.298039	1176.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.107	1	35.107	34.607	35.607	0								0	0	0	0.15486	1	11647	11647		12.532	0.89125	1				64528	29072	47017	47388	62899	62899					0.0002970826915316138
YTFLWSPMP	9	Unmodified	_YTFLWSPMP_					0	0	0		ENST00000490455.1_1_7:27788143-27797760:+|nuORF;TAX1BP1-BRAF|1|fusion;nc|ENSG00000106052|Q86VP1-2|TAX1BP1;ENSG00000106052|ENST00000396319|TAX1BP1	ENST00000490455.1_1_7:27788143-27797760:+|nuORF	ENST00000490455.1_1_7:27788143-27797760:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	380.5999755859375	3	381.184411	1140.5314	0.14951	5.699E-05	-0.26053	-9.9312E-05	-0.11103	-4.2321E-05	381.1843150407268	27.002	0.3514	27.002	26.878	27.229	0					10	6	2	0	0	0	0.75466	1	8204	8204		8.1555	6.4133	1	3750900			64529	2664	47018	47389	62900	62900					-0.03324117660372394
YTFNLALADF	10	Unmodified	_YTFNLALADF_					0	0	0		P2RY1|p.M90T|1|0.28|ENSG00000169860|chr3:152836051-152836051|T/C|missense_variant	P2RY1|p.M90T|1|0.28|ENSG00000169860|chr3:152836051-152836051|T/C|missense_variant	P2RY1|p.M90T|1|0.28|ENSG00000169860|chr3:152836051-152836051|T/C|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	588.1943359375	2	587.792589	1173.57063	-0.57647	-0.00033885	2.5783	0.0015155	2.0018	0.0011766	587.7947493211879	73.003	0.76363	73.739	73.48	74.243	0.7354					20	14	2	0	0	0	0.56082	1	27716	27716		21.537	0	1	1690800			64530	15104	47019	47390	62901	62901					-0.009216941051590766
YTFPGILKW	9	Unmodified	_YTFPGILKW_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25246445-25268811:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-SECPEP	A375_MHC_IP_R1	1	562.2320556640625	2	562.810585	1123.60662	-0.60807	-0.00034223	-0.55588	-0.00031286	-1.164	-0.00065509	562.8105479970319	120.05	0.40799	120.05	119.79	120.2	0					10	7	2	0	0	0	0.34746	1	44457	44457		45.7	21.679	1	6805700			64531	5684	47020	47391	62902	62902					0.049758078623881374
YTFPGILKW	9	Unmodified	_YTFPGILKW_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25246445-25268811:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-MATCH	A375_MHC_IP_R2	2		2	562.810585	1123.60662	-0.48349	-0.00027212	0.13008	7.3211E-05	-0.35341	-0.0001989	562.8105453345852	119.19	0.30629	119.72	119.48	119.79	0.5321	-0.16379	0.0003594	NaN	69.105	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8689800			64532	5684	47020	47391							0.049758078623881374
YTFPNGAKY	9	Unmodified	_YTFPNGAKY_					0	0	0		nc|ENSG00000188010|Q502X0|MORN2;ENSG00000188010|ENST00000644631|MORN2	nc|ENSG00000188010|Q502X0|MORN2	nc|ENSG00000188010|Q502X0|MORN2	MULTI-SECPEP	A375_MHC_IP_R1	1	531.158203125	2	530.758549	1059.50255	-0.26114	-0.0001386	-0.22062	-0.00011709	-0.48176	-0.0002557	530.7583523511571	49.565	0.76351	49.565	49.184	49.947	0					40	14	4	0	0	0	0.11711	1	17515	17515		60.074	60.074	1	19574000			64533	8873	47021	47392	62903	62903					-0.02482518965143754
YTFPNGAKY	9	Unmodified	_YTFPNGAKY_					0	0	0		nc|ENSG00000188010|Q502X0|MORN2;ENSG00000188010|ENST00000644631|MORN2	nc|ENSG00000188010|Q502X0|MORN2	nc|ENSG00000188010|Q502X0|MORN2	MULTI-MSMS	A375_MHC_IP_R2	2	531.1570434570312	2	530.758549	1059.50255	-0.76853	-0.00040791	-0.014895	-7.9054E-06	-0.78343	-0.00041581	530.7583802050888	48.962	0.71362	49.72	49.332	50.046	0.75736					37	13	4	0	0	0	0.11629	2	18316	18316;18433		47.749	17.524	1	15918000			64534	8873	47021	47392	62904;62905	62904					-0.02482518965143754
YTFVYLYFSFR	11	Unmodified	_YTFVYLYFSFR_					0	0	0			REV__ENSG00000172292|ENST00000305747|CERS6	REV__ENSG00000172292|ENST00000305747|CERS6	MSMS	A375_MHC_IP_R1	1	502.6455993652344	3	502.586972	1504.73909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.903	1	30.903	30.403	31.403	0								0	0	0	0.16309	1	9865	9865		2.6312	0.37851	1		+		64535	21134	47022	47393	62906	62906					0.006907878085030461
YTGDANDTVFY	11	Unmodified	_YTGDANDTVFY_					0	0	0			REV__FLNB|p.C1280Y|1|0.2|ENSG00000136068|chr3:58124446-58124446|G/A|missense_variant	REV__FLNB|p.C1280Y|1|0.2|ENSG00000136068|chr3:58124446-58124446|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	633.669189453125	2	633.269675	1264.5248	-0.72529	-0.0004593	-0.19192	-0.00012154	-0.91721	-0.00058084	633.269531371209	31.237	0.4056	31.237	31.009	31.414	0					12	7	2	0	0	0	0.71172	1	10016	10016		38.176	22.927	1	4696200	+		64536	26634	47023	47394	62907	62907					-0.09688384078049239
YTGDANDTVFY	11	Unmodified	_YTGDANDTVFY_					0	0	0			REV__FLNB|p.C1280Y|1|0.2|ENSG00000136068|chr3:58124446-58124446|G/A|missense_variant	REV__FLNB|p.C1280Y|1|0.2|ENSG00000136068|chr3:58124446-58124446|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	633.6687622070312	2	633.269675	1264.5248	-0.81936	-0.00051888	-0.035718	-2.2619E-05	-0.85508	-0.0005415	633.269582551106	30.692	0.40265	31.411	31.216	31.618	0.71857					13	7	2	0	0	0	0.55166	1	10811	10811		45.7	10.768	1	3895100	+		64537	26634	47023	47394	62908	62908					-0.09688384078049239
YTGERPYEC	9	Unmodified	_YTGERPYEC_					0	0	0		ZNF691|p.H249Y|1|0.33|ENSG00000164011|chr1:42851610-42851610|C/T|missense_variant;ZNF546|p.H351Y|1|0.33|ENSG00000187187|chr19:40014321-40014321|C/T|missense_variant;ZNF334|p.H287Y|1|0.41|ENSG00000198185|chr20:46502480-46502480|G/A|missense_variant;ZNF304|p.H385Y|1|0.25|ENSG00000131845|chr19:57357022-57357022|C/T|missense_variant	ZNF691|p.H249Y|1|0.33|ENSG00000164011|chr1:42851610-42851610|C/T|missense_variant	ZNF691|p.H249Y|1|0.33|ENSG00000164011|chr1:42851610-42851610|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	559.216796875	2	559.234581	1116.45461	-0.47308	-0.00026456	-0.12826	-7.1725E-05	-0.60134	-0.00033629	559.2346171881902	33.526	0.75832	33.526	33.04	33.798	0					42	14	5	0	0	0	0.53367	1	10978	10978		18.146	6.5061	1	21626000			64538	30211	47024	47395	62909	62909					-0.09895960947505955
YTGERPYEC	9	Unmodified	_YTGERPYEC_					0	0	0		ZNF691|p.H249Y|1|0.33|ENSG00000164011|chr1:42851610-42851610|C/T|missense_variant;ZNF546|p.H351Y|1|0.33|ENSG00000187187|chr19:40014321-40014321|C/T|missense_variant;ZNF334|p.H287Y|1|0.41|ENSG00000198185|chr20:46502480-46502480|G/A|missense_variant;ZNF304|p.H385Y|1|0.25|ENSG00000131845|chr19:57357022-57357022|C/T|missense_variant	ZNF691|p.H249Y|1|0.33|ENSG00000164011|chr1:42851610-42851610|C/T|missense_variant	ZNF691|p.H249Y|1|0.33|ENSG00000164011|chr1:42851610-42851610|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	559.6339721679688	2	559.234581	1116.45461	-0.75324	-0.00042124	0.18166	0.00010159	-0.57158	-0.00031964	559.2347219354175	32.84	0.86535	33.577	33.01	33.876	0.73691					31	16	3	0	0	0	0.60101	1	11698	11698		14.838	4.7643	1	12747000			64539	30211	47024	47395	62910	62910					-0.09895960947505955
YTGKENYEY	9	Unmodified	_YTGKENYEY_					0	0	0		nc|ENSG00000163638|Q9P2N4-4|ADAMTS9;ENSG00000163638|ENST00000498707|ADAMTS9	nc|ENSG00000163638|Q9P2N4-4|ADAMTS9	nc|ENSG00000163638|Q9P2N4-4|ADAMTS9	MULTI-SECPEP	A375_MHC_IP_R1	1	584.17529296875	2	583.753661	1165.49277	-0.47365	-0.0002765	0.33417	0.00019507	-0.13948	-8.1424E-05	584.2551647858945	25.841	0.40404	25.841	25.714	26.118	0					14	7	3	0	0	0	0.10103	1	7643	7643		45.7	9.5726	1	4636800			64540	6701	47025	47396	62911	62911					-0.08335751761183019
YTGKENYEY	9	Unmodified	_YTGKENYEY_					0	0	0		nc|ENSG00000163638|Q9P2N4-4|ADAMTS9;ENSG00000163638|ENST00000498707|ADAMTS9	nc|ENSG00000163638|Q9P2N4-4|ADAMTS9	nc|ENSG00000163638|Q9P2N4-4|ADAMTS9	MULTI-SECPEP	A375_MHC_IP_R2	2	584.153076171875	2	583.753661	1165.49277	-0.87552	-0.00051109	-0.084629	-4.9403E-05	-0.96015	-0.00056049	583.7537886872167	25.332	0.45859	25.976	25.77	26.229	0.64368					15	8	3	0	0	0	0.056023	1	8473	8473		85.642	17.561	1	4155600			64541	6701	47025	47396	62912	62912					-0.08335751761183019
YTGKKPYKCEE	11	Unmodified	_YTGKKPYKCEE_					0	0	0		ZNF99|p.H699Y|1|0.23|ENSG00000213973|chr19:22757814-22757814|G/A|missense_variant;ZNF99|p.H615Y|1|0.46|ENSG00000213973|chr19:22758066-22758066|G/A|missense_variant;ZNF99|p.H531Y|1|0.21|ENSG00000213973|chr19:22758318-22758318|G/A|missense_variant;ZNF98|p.H260Y|1|0.38|ENSG00000197360|chr19:22392457-22392457|G/A|missense_variant;ZNF98|p.H232Y|2|0.4|ENSG00000197360|chr19:22392541-22392541|G/A|missense_variant;ZNF727|p.H222Y|1|0.23|ENSG00000214652|chr7:64077713-64077713|C/T|missense_variant;ZNF492|p.H219Y|1|1.0|ENSG00000229676|chr19:22664324-22664324|C/T|missense_variant;ZNF492|p.H191Y|1|0.35|ENSG00000229676|chr19:22664240-22664240|C/T|missense_variant	ZNF99|p.H699Y|1|0.23|ENSG00000213973|chr19:22757814-22757814|G/A|missense_variant	ZNF99|p.H699Y|1|0.23|ENSG00000213973|chr19:22757814-22757814|G/A|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	449.28570556640625	3	449.220072	1344.63839	-0.35807	-0.00016085	1.7947	0.0008062	1.4366	0.00064535	449.22129348195136	32.451	0.66116	33.187	33.061	33.722	0.73692					16	12	2	0	0	0	0.99681	1	11611	11611		7.0371	0	1	3587700			64542	30223	47026	47397	62913	62913					-0.020146122366440977
YTGKRIAL	8	Unmodified	_YTGKRIAL_					0	0	0		ENST00000547486.1_1_12:69645004-69651771:+|nuORF;nc|ENSG00000111605|Q16630-3|CPSF6;ENSG00000111605|ENST00000435070|CPSF6;nc|ENSG00000111605|Q16630-2|CPSF6;ENST00000550987.5_1_12:69633426-69648902:+|nuORF	ENST00000547486.1_1_12:69645004-69651771:+|nuORF	ENST00000547486.1_1_12:69645004-69651771:+|nuORF	MSMS	A375_MHC_IP_R1	1	461.67913818359375	2	461.279452	920.544351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.373	1	26.373	25.873	26.873	0								0	0	0	0.16876	1	7852	7852		17.113	3.2068	1				64543	3001	47027	47398	62914	62914					0.0809008151402395
YTGSDDTH	8	Unmodified	_YTGSDDTH_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	A375_MHC_IP_R2	2	448.1559143066406	2	448.175047	894.33554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.82	1	52.573	52.073	53.073	0.75225								0	0	0	0.16876	1	19513	19513		5.7604	0	1		+		64544	19932	47028	47399	62915	62915					-0.11585411580711025
YTHACSCSPY	10	Unmodified	_YTHACSCSPY_					0	0	0			REV__ENST00000466398.5_1_2:180409590-180440874:-|nuORF	REV__ENST00000466398.5_1_2:180409590-180440874:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	565.697509765625	2	566.215334	1130.41612	-0.42866	-0.00024271	1.3078	0.00074047	0.8791	0.00049776	566.216295925004	64.813	0.81245	65.551	65.206	66.018	0.73811					36	15	3	0	0	0	0.9269	1	24656	24656		10.824	6.4947	1	3971600	+		64545	24941	47029	47400	62916	62916					-0.14387589853663485
YTHDSFFS	8	Unmodified	_YTHDSFFS_					0	0	0		RFPL4B|p.G234S|1|0.16|ENSG00000251258|chr6:112350408-112350408|G/A|missense_variant	RFPL4B|p.G234S|1|0.16|ENSG00000251258|chr6:112350408-112350408|G/A|missense_variant	RFPL4B|p.G234S|1|0.16|ENSG00000251258|chr6:112350408-112350408|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	502.611083984375	2	502.211432	1002.40831	-0.33822	-0.00016986	-0.21018	-0.00010556	-0.5484	-0.00027541	502.21130509622344	34.835	0.66123	34.835	34.657	35.319	0					28	12	3	0	0	0	0.77702	1	11504	11504		5.7604	0	1	18274000			64546	29067	47030	47401	62917	62917					-0.09279657787271844
YTHEVVTLW	9	Unmodified	_YTHEVVTLW_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;ENSG00000250506|ENST00000448471|CDK3;ENST00000556656.5_1_12:56361683-56365109:+|nuORF;ENST00000567351.5_2_17:73997368-73998786:+|nuORF;CDK3|p.R157H|1|0.11|ENSG00000250506|chr17:76002402-76002402|G/A|missense_variant;ENST00000554619.5_1_12:56361683-56363594:+|nuORF;ENSG00000123374|ENST00000266970|CDK2	ENSG00000170312|ENST00000395284|CDK1;ENSG00000123374|ENST00000266970|CDK2	ENSG00000170312|ENST00000395284|CDK1	MULTI-SECPEP	A375_MHC_IP_R1	1	574.6930541992188	2	574.292756	1146.57096	-0.27897	-0.00016021	-1.7016	-0.0009772	-1.9805	-0.0011374	574.7924163143339	83.608	1.1669	83.608	83.075	84.241	0					27	22	2	0	0	0	0.39388	1	30636	30636		39.957	19.543	1	2189800			64547	7492;3843	47031	47402	62918	62918					0.003537256147183143
YTHEVVTLW	9	Unmodified	_YTHEVVTLW_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;ENSG00000250506|ENST00000448471|CDK3;ENST00000556656.5_1_12:56361683-56365109:+|nuORF;ENST00000567351.5_2_17:73997368-73998786:+|nuORF;CDK3|p.R157H|1|0.11|ENSG00000250506|chr17:76002402-76002402|G/A|missense_variant;ENST00000554619.5_1_12:56361683-56363594:+|nuORF;ENSG00000123374|ENST00000266970|CDK2	ENSG00000170312|ENST00000395284|CDK1;ENSG00000123374|ENST00000266970|CDK2	ENSG00000170312|ENST00000395284|CDK1	MULTI-SECPEP	A375_MHC_IP_R2	2	574.1483154296875	2	574.292756	1146.57096	-0.22232	-0.00012768	-0.33567	-0.00019277	-0.55799	-0.00032045	574.2931614431723	82.801	0.50307	83.544	83.246	83.749	0.74293					15	9	2	0	0	0	0.28475	1	31444	31444		48.346	27.892	1	1319000			64548	7492;3843	47031	47402	62919	62919					0.003537256147183143
YTHFYFCYRWF	11	Unmodified	_YTHFYFCYRWF_					0	0	0		nc|ENSG00000141258|O43147-5|SGSM2;nc|ENSG00000141258|O43147|SGSM2;ENSG00000141258|ENST00000268989|SGSM2;ENST00000572841.1_1_17:2279931-2282811:+|nuORF;ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENSG00000167037|ENST00000400358|SGSM1;ENST00000480523.1_1_22:25240737-25320238:+|nuORF;nc|ENSG00000167037|Q2NKQ1|SGSM1;nc|ENSG00000167037|Q2NKQ1-3|SGSM1	nc|ENSG00000141258|O43147-5|SGSM2;ENST00000473458.5_1_22:25240737-25320238:+|nuORF	nc|ENSG00000141258|O43147-5|SGSM2	MULTI-SECPEP	A375_MHC_IP_R2	2	545.4064331054688	3	544.90794	1631.70199	-0.90054	-0.00049071	-1.556	-0.00084788	-2.4566	-0.0013386	545.2421495122538	81.28	0.30115	82.025	81.93	82.231	0.74474					6	5	2	0	0	0	1.0014	1	30833	30833		0.50596	0.41111	1	696270			64549	5223;7149	47032	47403	62920	62920					-0.08859207008913472
YTHRGMMDY	9	Unmodified	_YTHRGMMDY_					0	0	0			REV__KCNIP3|p.S193F|1|0.19|ENSG00000115041|chr2:95382399-95382399|C/T|missense_variant	REV__KCNIP3|p.S193F|1|0.19|ENSG00000115041|chr2:95382399-95382399|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	587.6434936523438	2	587.244426	1172.4743	-0.29355	-0.00017239	-0.71241	-0.00041836	-1.006	-0.00059075	587.2437796400029	57.867	0.5081	57.867	57.618	58.126	0					13	9	2	0	0	0	0.69674	1	20790	20790		7.2892	0.56607	1	2045500	+		64550	17853	47033	47404	62921	62921					-0.10503908208374924
YTHVLEGTM	9	Unmodified	_YTHVLEGTM_					0	0	0			REV__APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant	REV__APAF1|p.Q974Sfs*15|1|0.07|ENSG00000120868|chr12:98712397-98712397|C/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	525.7030029296875	2	525.749867	1049.48518	-0.63106	-0.00033178	-3.3823	-0.0017782	-4.0133	-0.00211	525.7484786857464	40.692	0.35611	41.467	41.285	41.641	0.77451					9	6	2	0	0	0	0.35581	1	15094	15094		26.884	0.54238	1	845410	+		64551	15420	47034	47405	62922	62922					-0.037581825624556586
YTIENPRHF	9	Unmodified	_YTIENPRHF_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	A375_MHC_IP_R2	2	589.2455444335938	2	588.793455	1175.57236	-0.84194	-0.00049573	1.62	0.00095386	0.77809	0.00045813	588.7946490369492	34.321	0.76235	35.073	34.853	35.616	0.75225					19	14	2	0	0	0	0.10622	2	12352	12352;12405		49.554	22.699	1	4467400			64552	9124	47035	47406	62923;62924	62923					-0.008406402965420057
YTISHDDSL	9	Unmodified	_YTISHDDSL_					0	0	0		ZNF512|p.P47S|1|0.18|ENSG00000243943|chr2:27598116-27598116|C/T|missense_variant	ZNF512|p.P47S|1|0.18|ENSG00000243943|chr2:27598116-27598116|C/T|missense_variant	ZNF512|p.P47S|1|0.18|ENSG00000243943|chr2:27598116-27598116|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	526.0979614257812	2	525.740554	1049.46655	-0.49861	-0.00026214	-0.58636	-0.00030827	-1.085	-0.00057041	525.74055042258	60.827	0.5095	60.827	60.514	61.024	0					16	9	2	0	0	0	0.75466	1	21806	21806		1.8442	0	1	1098200			64553	30224	47036	47407	62925	62925					-0.05620020932656189
YTKFQIATW	9	Unmodified	_YTKFQIATW_					0	0	0		ENSG00000052802|ENST00000261507|MSMO1	ENSG00000052802|ENST00000261507|MSMO1	ENSG00000052802|ENST00000261507|MSMO1	MULTI-SECPEP	A375_MHC_IP_R2	2	578.7058715820312	2	579.303124	1156.5917	-0.28128	-0.00016295	2.0272	0.0011743	1.7459	0.0010114	579.3054242053806	82.292	0.50989	83.035	82.787	83.297	0.74293					16	9	2	0	0	0	0.54812	1	31278	31278		24.991	0.31707	1	2097700			64554	1241	47037	47408	62926	62926					0.0196631599437751
YTKGKRKL	8	Unmodified	_YTKGKRKL_					0	0	0			REV__ENST00000504454.5_2_4:114274782-114274872:+|nuORF	REV__ENST00000504454.5_2_4:114274782-114274872:+|nuORF	MSMS	A375_MHC_IP_R2	2	497.3094482421875	2	497.313826	992.613099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.395	1	24.025	23.525	24.525	0.63014								0	0	0	0.16876	1	7518	7518		2.5775	0.51773	1		+		64555	25528	47038	47409	62927	62927					0.1164974581373599
YTKHPSKPDP	10	Unmodified	_YTKHPSKPDP_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4;ENST00000502424.1_1_5:14797477-14798464:-|nuORF;ENST00000398588.2_1_6:58446590-58447106:-|nuORF	nc|ENSG00000162521|Q09028-3|RBBP4;ENST00000398588.2_1_6:58446590-58447106:-|nuORF	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-SECPEP	A375_MHC_IP_R2	2	585.1906127929688	2	585.301113	1168.58767	-0.47789	-0.00027971	-0.15356	-8.9882E-05	-0.63146	-0.00036959	585.3010843394359	76.089	0.45535	76.829	76.589	77.045	0.74052					12	8	2	0	0	0	0.83355	1	28857	28857		12.241	0	1	2490500			64556	6544;11522	47039	47410	62928	62928					0.010122265006657472
YTKIFNDFK	9	Unmodified	_YTKIFNDFK_					0	0	0		nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	MSMS	A375_MHC_IP_R1	1	588.3644409179688	2	588.308406	1174.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.651	1	73.651	73.151	74.151	0								0	0	0	0.14729	1	26822	26822		21.537	4.5947	1				64557	1033	47040	47411	62929	62929					0.02194298648782933
YTKKRGQRP	9	Unmodified	_YTKKRGQRP_					0	0	0		ENSG00000108591|ENST00000225729|DRG2;ENST00000467099.6_1_17:18003545-18010551:+|nuORF	ENSG00000108591|ENST00000225729|DRG2	ENSG00000108591|ENST00000225729|DRG2	MULTI-MSMS	A375_MHC_IP_R1	1	567.3290405273438	2	567.330539	1132.64652	-0.6468	-0.00036695	-0.68479	-0.0003885	-1.3316	-0.00075545	567.3299640417601	135.36	0.96539	135.36	134.88	135.84	0					26	18	2	0	0	0	0.75032	1	52150	52150		1.8442	0	1	4611500			64558	2820	47041	47412	62930	62930					0.0855074758567298
YTKMKTFE	8	Unmodified	_YTKMKTFE_					0	0	0		ENSG00000187801|ENST00000361584|ZFP69B;nc|ENSG00000187801|Q9UJL9-2|ZFP69B	ENSG00000187801|ENST00000361584|ZFP69B	ENSG00000187801|ENST00000361584|ZFP69B	MSMS	A375_MHC_IP_R2	2	524.1785888671875	2	524.26261	1046.51067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.3	1	134.44	133.94	134.94	0.13901								0	0	0	0.16876	1	52833	52833		15.847	1.0089	1				64559	8860	47042	47413	62931	62931					-0.010727080400329214
YTKNKSYSF	9	Unmodified	_YTKNKSYSF_					0	0	0			REV__C9|p.E278K|2|0.38|ENSG00000113600|chr5:39315813-39315813|C/T|missense_variant	REV__C9|p.E278K|2|0.38|ENSG00000113600|chr5:39315813-39315813|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	379.9241027832031	3	379.857351	1136.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.815	1	27.475	26.975	27.975	0.65992								0	0	0	0.15486	1	9100	9100		8.1555	0	1		+		64560	15546	47043	47414	62932	62932					-0.012588647649408813
YTKNMRSKY	9	Unmodified	_YTKNMRSKY_					0	0	0			REV__nc|ENSG00000123485|Q8NCD3-3|HJURP	REV__nc|ENSG00000123485|Q8NCD3-3|HJURP	MULTI-SECPEP	A375_MHC_IP_R2	2	396.9559631347656	3	397.537736	1189.59138	-0.39003	-0.00015505	0.74286	0.00029531	0.35283	0.00014026	397.538083423922	24.288	0.25383	24.932	24.806	25.06	0.64368					7	4	2	0	0	0	0.71341	1	7972	7972		12.873	3.8964	1	2426300	+		64561	18246	47044	47415	62933	62933					0.004165730028944381
YTLDPILITI	10	Unmodified	_YTLDPILITI_					0	0	0		nc|ENSG00000118257|O60462-2|NRP2;ENSG00000118257|ENST00000357785|NRP2;nc|ENSG00000118257|O60462|NRP2;ENST00000467850.1_1_2:206629136-206659779:+|nuORF	nc|ENSG00000118257|O60462-2|NRP2	nc|ENSG00000118257|O60462-2|NRP2	MULTI-MSMS	A375_MHC_IP_R1	1	387.94287109375	3	387.897035	1160.66928	0.38667	0.00014999	1.8474	0.00071661	2.2341	0.0008666	387.8973928360808	54.336	0.55456	54.336	53.912	54.467	0					14	10	2	0	0	0	0.70496	1	19419	19419		5.7834	0	1	809570			64562	3534	47045	47416	62934	62934					0.09536909139910676
YTLEPGQPD	9	Unmodified	_YTLEPGQPD_					0	0	0			REV__nc|ENSG00000114646|O95196-3|CSPG5	REV__nc|ENSG00000114646|O95196-3|CSPG5	MSMS	A375_MHC_IP_R1	1	510.1691589355469	2	510.237647	1018.46074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.72	1	24.72	24.22	25.22	0								0	0	0	0.15486	1	7082	7082		6.7232	0	1		+		64563	17833	47046	47417	62935	62935					-0.04775119444320808
YTLFQPDVY	9	Unmodified	_YTLFQPDVY_					0	0	0			REV__nc|ENSG00000181191|Q8NG27-2|PJA1;REV__nc|ENSG00000198961|O43164-2|PJA2	REV__nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	A375_MHC_IP_R1	1	573.6792602539062	2	573.279315	1144.54408	-0.37483	-0.00021488	0.1277	7.321E-05	-0.24713	-0.00014167	573.2793703466444	80.466	1.1669	80.466	80.136	81.303	0					62	22	3	0	0	0	0.082375	1	29366	29366		53.833	6.0841	1	14444000	+		64564	22458;21640	47047	47418	62936	62936					-0.022413829964762044
YTLFQPDVY	9	Unmodified	_YTLFQPDVY_					0	0	0			REV__nc|ENSG00000181191|Q8NG27-2|PJA1;REV__nc|ENSG00000198961|O43164-2|PJA2	REV__nc|ENSG00000198961|O43164-2|PJA2	MULTI-SECPEP	A375_MHC_IP_R1	1	573.982177734375	2	573.279315	1144.54408	-0.37483	-0.00021488	0.1277	7.321E-05	-0.24713	-0.00014167	573.2793703466444	80.466	1.1669	80.466	80.136	81.303	0					62	22	3	0	0	0	0.41731	1	29342	29342		53.833	49.077	1	14444000	+		64565	22458;21640	47047	47418	62937	62937					-0.022413829964762044
YTLFQPDVY	9	Unmodified	_YTLFQPDVY_					0	0	0			REV__nc|ENSG00000181191|Q8NG27-2|PJA1;REV__nc|ENSG00000198961|O43164-2|PJA2	REV__nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	A375_MHC_IP_R2	2	574.3236083984375	2	573.279315	1144.54408	-0.19528	-0.00011195	-0.46171	-0.00026469	-0.65699	-0.00037664	573.2790857699493	79.761	1.5751	80.506	80.047	81.622	0.74474					61	30	3	0	0	0	0.6324	1	30192	30192		13.042	4.4492	1	11487000	+		64566	22458;21640	47047	47418	62938	62938					-0.022413829964762044
YTLFQPDVY	9	Unmodified	_YTLFQPDVY_					0	0	0			REV__nc|ENSG00000181191|Q8NG27-2|PJA1;REV__nc|ENSG00000198961|O43164-2|PJA2	REV__nc|ENSG00000198961|O43164-2|PJA2	MULTI-SECPEP	A375_MHC_IP_R2	2	573.6795043945312	2	573.279315	1144.54408	-0.29792	-0.00017079	0.2009	0.00011517	-0.097027	-5.5623E-05	573.279211649918	82.047	1.166	82.79	82.029	83.195	0.74293					33	22	2	0	0	0	0.74597	1	30967	30967		12.241	0	1	1426800	+		64567	22458;21640	47047	47418	62939	62939					-0.022413829964762044
YTLFQPDVY	9	Unmodified	_YTLFQPDVY_					0	0	0			REV__nc|ENSG00000181191|Q8NG27-2|PJA1;REV__nc|ENSG00000198961|O43164-2|PJA2	REV__nc|ENSG00000198961|O43164-2|PJA2	MULTI-SECPEP	A375_MHC_IP_R2	2	572.7274169921875	2	573.279315	1144.54408	-0.19528	-0.00011195	-0.46171	-0.00026469	-0.65699	-0.00037664	573.2790857699493	79.761	1.5751	80.506	80.047	81.622	0.74474					61	30	3	0	0	0	0.63749	1	30373	30373		21.537	21.537	1	11487000	+		64568	22458;21640	47047	47418	62940	62940					-0.022413829964762044
YTLFVLSSVY	10	Unmodified	_YTLFVLSSVY_					0	0	0			REV__ENSG00000154258|ENST00000340001|ABCA9;REV__nc|ENSG00000154258|Q8IUA7-4|ABCA9	REV__ENSG00000154258|ENST00000340001|ABCA9	MULTI-MSMS	A375_MHC_IP_R2	2	596.7183837890625	2	596.31844	1190.62233	-0.46687	-0.00027841	0.21352	0.00012733	-0.25335	-0.00015108	596.3187866539726	118.38	0.55712	118.99	118.54	119.1	0.60909					22	10	3	0	0	0	0.30274	2	44911	44911;44945		39.957	11.47	1	15034000	+		64569	19874;27297	47048	47419	62941;62942	62941					0.03464049588774287
YTLFVLSSVY	10	Unmodified	_YTLFVLSSVY_					0	0	0			REV__ENSG00000154258|ENST00000340001|ABCA9;REV__nc|ENSG00000154258|Q8IUA7-4|ABCA9	REV__ENSG00000154258|ENST00000340001|ABCA9	MULTI-MATCH	A375_MHC_IP_R1	1		2	596.31844	1190.62233	-0.4301	-0.00025648	-0.17915	-0.00010683	-0.60925	-0.00036331	596.3180953885615	119.13	0.50666	119.13	118.73	119.23	0	0.066687	-0.00023464	NaN	39.957	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5475400	+		64570	19874;27297	47048	47419							0.03464049588774287
YTLFVLSSVY	10	Unmodified	_YTLFVLSSVY_					0	0	0			REV__ENSG00000154258|ENST00000340001|ABCA9;REV__nc|ENSG00000154258|Q8IUA7-4|ABCA9	REV__ENSG00000154258|ENST00000340001|ABCA9	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	596.31844	1190.62233	-0.46687	-0.00027841	0.21352	0.00012733	-0.25335	-0.00015108	596.3187866539726	118.38	0.55712	118.99	118.54	119.1	0.60909	-0.066687	0.00023367	NaN	39.957	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15034000	+		64571	19874;27297	47048	47419							0.03464049588774287
YTLGRRVNW	9	Unmodified	_YTLGRRVNW_					0	0	0			REV__ENST00000472616.1_1_7:139790896-139796717:-|nuORF	REV__ENST00000472616.1_1_7:139790896-139796717:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	388.9488525390625	3	388.880602	1163.61998	0.24875	9.6735E-05	-0.67595	-0.00026286	-0.4272	-0.00016613	388.88032939067045	31.694	0.60988	31.694	31.414	32.024	0					30	11	4	0	0	0	0.69317	1	10295	10295		7.609	0.50723	1	15363000	+		64572	25139	47049	47420	62943	62943					0.04471058694321073
YTLRERSWCL	10	Unmodified	_YTLRERSWCL_					0	0	0			REV__ENSG00000112276|ENST00000314641|BVES	REV__ENSG00000112276|ENST00000314641|BVES	MULTI-MSMS	A375_MHC_IP_R1	1	664.2337646484375	2	663.834797	1325.65504	-0.53858	-0.00035753	-0.76171	-0.00050565	-1.3003	-0.00086318	663.8343278279967	52.296	0.40526	52.296	52.136	52.541	0					14	7	3	0	0	0	0.70012	1	18610	18610		12.241	5.6103	1	2836200	+		64573	17722	47050	47421	62944	62944					0.005239334399902873
YTLRERSWCL	10	Unmodified	_YTLRERSWCL_					0	0	0			REV__ENSG00000112276|ENST00000314641|BVES	REV__ENSG00000112276|ENST00000314641|BVES	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	663.834797	1325.65504	-1.0932	-0.00072571	-0.78517	-0.00052123	-1.8784	-0.0012469	663.8342631973632	51.645	0.3047	52.398	52.219	52.524	0.75225	0.050806	-9.7738E-06	NaN	12.241	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2743900	+		64574	17722	47050	47421							0.005239334399902873
YTLVEYETY	9	Unmodified	_YTLVEYETY_					0	0	0		ENSG00000265241|ENST00000583313|RBM8A;nc|ENSG00000265241|Q9Y5S9-2|RBM8A;ENST00000555532.2_1_14:60864810-60864996:+|nuORF	ENSG00000265241|ENST00000583313|RBM8A	ENSG00000265241|ENST00000583313|RBM8A	MULTI-SECPEP	A375_MHC_IP_R2	2	591.1741333007812	2	590.774062	1179.53357	-0.48634	-0.00028732	0.6792	0.00040125	0.19286	0.00011394	590.7741652020374	89.226	0.5507	89.958	89.635	90.186	0.7318					14	10	2	0	0	0	0.50702	1	33965	33965		32.305	5.4218	1	1309100			64575	9958	47051	47422	62945	62945					-0.04901410441561893
YTMEGTAENPG	11	Unmodified	_YTMEGTAENPG_					0	0	0		nc|ENSG00000140859|Q9BVG8-4|KIFC3;nc|ENSG00000140859|Q9BVG8-5|KIFC3;ENSG00000140859|ENST00000445690|KIFC3;nc|ENSG00000140859|Q9BVG8|KIFC3;nc|ENSG00000140859|Q9BVG8-6|KIFC3	nc|ENSG00000140859|Q9BVG8-4|KIFC3	nc|ENSG00000140859|Q9BVG8-4|KIFC3	MULTI-SECPEP	A375_MHC_IP_R2	2	584.6825561523438	2	585.242603	1168.47065	-0.39689	-0.00023228	-1.8759	-0.0010979	-2.2728	-0.0013301	585.742474498638	84.541	0.45384	85.277	85.018	85.472	0.73602					14	8	3	0	0	0	0.98303	1	32175	32175		17.443	2.6044	1	967540			64576	5191	47052	47423	62946	62946					-0.10684299501281203
YTMIAREDP	9	Unmodified	_YTMIAREDP_					0	0	0			REV__nc|ENSG00000077522|P35609-2|ACTN2	REV__nc|ENSG00000077522|P35609-2|ACTN2	MULTI-MSMS	A375_MHC_IP_R2	2	549.1607666015625	2	548.260599	1094.50665	-0.86794	-0.00047586	0.44092	0.00024174	-0.42702	-0.00023412	548.2606199826527	44.621	1.3725	45.39	44.985	46.357	0.76909					91	26	4	0	0	0	0.53367	1	16856	16856		18.146	1.9972	1	108890000	+		64577	16695	47053	47424	62947	62947					-0.036827975337246244
YTMKEVLFY	9	Unmodified	_YTMKEVLFY_					0	0	0		nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;nc|ENSG00000135679|Q00987-7|MDM2;ENST00000493419.1_1_12:69202221-69210726:+|nuORF	nc|ENSG00000135679|Q00987-10|MDM2	nc|ENSG00000135679|Q00987-10|MDM2	MULTI-SECPEP	A375_MHC_IP_R1	1	597.6991577148438	2	597.299193	1192.58383	-0.21785	-0.00013012	-0.26238	-0.00015672	-0.48023	-0.00028684	597.2991569188167	93.048	1.2728	93.048	92.617	93.89	0					44	24	3	0	0	0	0.39273	1	34165	34165		43.982	9.8794	1	17243000			64578	4705	47054	47425	62948	62948					-0.004755793174126666
YTMKEVLFY	9	Unmodified	_YTMKEVLFY_					0	0	0		nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;nc|ENSG00000135679|Q00987-7|MDM2;ENST00000493419.1_1_12:69202221-69210726:+|nuORF	nc|ENSG00000135679|Q00987-10|MDM2	nc|ENSG00000135679|Q00987-10|MDM2	MULTI-SECPEP	A375_MHC_IP_R2	2	597.2515869140625	2	597.299193	1192.58383	-0.47563	-0.00028409	-0.18679	-0.00011157	-0.66242	-0.00039566	597.2994714786489	92.255	1.2136	92.994	92.483	93.696	0.73902					62	23	5	0	0	0	0.10495	1	35119	35119		74.2	40.097	1	15553000			64579	4705	47054	47425	62949	62949					-0.004755793174126666
YTMKEVLFY	9	Oxidation (M)	_YTM(Oxidation (M))KEVLFY_		YTM(1)KEVLFY		YTM(81)KEVLFY	0	0	1		nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;nc|ENSG00000135679|Q00987-7|MDM2;ENST00000493419.1_1_12:69202221-69210726:+|nuORF	nc|ENSG00000135679|Q00987-10|MDM2	nc|ENSG00000135679|Q00987-10|MDM2	MULTI-SECPEP	A375_MHC_IP_R1	1	604.6846313476562	2	605.29665	1208.57875	-0.099878	-6.0456E-05	-0.015623	-9.4567E-06	-0.1155	-6.9913E-05	605.2966394625765	70.16	0.81355	70.16	69.732	70.545	0					34	15	3	0	0	0	0.076731	1	25458	25458		80.676	48.371	1	9677200			64580	4705	47054	47426	62950	62950		248			-0.01719883180044235
YTMKEVLFY	9	Oxidation (M)	_YTM(Oxidation (M))KEVLFY_		YTM(1)KEVLFY		YTM(48)KEVLFY	0	0	1		nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;nc|ENSG00000135679|Q00987-7|MDM2;ENST00000493419.1_1_12:69202221-69210726:+|nuORF	nc|ENSG00000135679|Q00987-10|MDM2	nc|ENSG00000135679|Q00987-10|MDM2	MULTI-MSMS	A375_MHC_IP_R2	2	605.1861572265625	2	605.29665	1208.57875	-0.32973	-0.00019958	-1.0128	-0.00061305	-1.3425	-0.00081264	605.2964496167112	69.322	0.91539	70.056	69.625	70.54	0.73421					45	17	5	0	0	0	0.11638	1	26345	26345		47.732	22.333	1	9498000			64581	4705	47054	47426	62951	62951		248			-0.01719883180044235
YTMMGSEDH	9	Unmodified	_YTMMGSEDH_					0	0	0		nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE;CENPE|p.D1988Mfs*4|1|0.29|ENSG00000138778|chr4:103140032-103140032|T/-|frameshift_variant	nc|ENSG00000138778|Q02224-3|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	MULTI-MSMS	A375_MHC_IP_R1	1	536.1970825195312	2	535.699517	1069.38448	-0.57292	-0.00030691	0.71408	0.00038253	0.14116	7.5621E-05	535.6998806422015	35.249	0.76458	35.249	34.912	35.676	0					36	14	3	0	0	0	0.55818	1	11824	11824		16.942	5.302	1	21667000			64582	5032	47055	47427	62952	62952					-0.14743582607593453
YTNDFRLVDA	10	Unmodified	_YTNDFRLVDA_					0	0	0			REV__ENST00000320982.3_1_22:30886096-30887579:-|nuORF	REV__ENST00000320982.3_1_22:30886096-30887579:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	607.6953125	2	607.296027	1212.5775	-0.50073	-0.00030409	-0.14555	-8.839E-05	-0.64628	-0.00039248	607.2958028979605	81.298	0.75942	82.043	81.724	82.484	0.74474					32	14	3	0	0	0	0.44858	1	30827	30827		31.268	6.2774	1	9149600	+		64583	23565	47056	47428	62953	62953					-0.020283812245679655
YTNKEMLKY	9	Oxidation (M)	_YTNKEM(Oxidation (M))LKY_		YTNKEM(1)LKY		YTNKEM(41)LKY	0	0	1		ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	MULTI-MSMS	A375_MHC_IP_R1	1	603.6969604492188	2	603.297181	1204.57981	-0.63547	-0.00038338	0.32864	0.00019827	-0.30682	-0.00018511	603.2975087199152	23.48	0.45779	23.48	23.33	23.787	0					16	8	3	0	0	0	0.16286	1	6512	6512		40.725	16.051	1	2940100			64584	1194	47057	47429	62954	62954		24			-0.014296688111244293
YTNKEMLKY	9	Oxidation (M)	_YTNKEM(Oxidation (M))LKY_					0	0	1		ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	MULTI-MATCH	A375_MHC_IP_R2	2		2	603.297181	1204.57981	-0.79909	-0.00048209	0.93202	0.00056228	0.13293	8.0195E-05	603.297084145454	23.076	0.30612	23.706	23.572	23.878	0.63014	0.11333	0.00051052	NaN	40.725	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1456100			64585	1194	47057	47429				24			-0.014296688111244293
YTNKEMLKY	9	Unmodified	_YTNKEMLKY_					0	0	0		ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	MULTI-SECPEP	A375_MHC_IP_R1	1	396.59600830078125	3	397.202242	1188.5849	-0.37166	-0.00014762	0.0069725	2.7695E-06	-0.36469	-0.00014485	397.2021905983437	29.001	0.35413	29.001	28.795	29.149	0					9	6	2	0	0	0	0.69507	1	9013	9013		18.373	15.301	1	3228700			64586	1194	47057	47430	62955	62955					-0.0018536494851559837
YTNKEMLKY	9	Unmodified	_YTNKEMLKY_					0	0	0		ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	MULTI-SECPEP	A375_MHC_IP_R2	2	397.60211181640625	3	397.202242	1188.5849	-0.42181	-0.00016755	0.10651	4.2307E-05	-0.3153	-0.00012524	397.2022016305957	28.277	0.40624	28.956	28.757	29.163	0.67857					18	7	4	0	0	0	0.23894	1	9754	9754		44.392	24.766	1	4667200			64587	1194	47057	47430	62956	62956					-0.0018536494851559837
YTNPTVRRY	9	Unmodified	_YTNPTVRRY_					0	0	0		ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	MULTI-MSMS	A375_MHC_IP_R1	1	585.7069091796875	2	585.306729	1168.59891	0.0075874	4.4409E-06	-0.49512	-0.0002898	-0.48753	-0.00028536	585.3064288624548	21.58	0.40561	21.58	21.301	21.706	0					13	7	2	0	0	0	0.32092	1	5690	5690		29.082	12.139	1	2222800			64588	1668	47058	47431	62957	62957					0.02135048594800537
YTNPTVRRY	9	Unmodified	_YTNPTVRRY_					0	0	0		ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	MULTI-MSMS	A375_MHC_IP_R1	1	390.92193603515625	3	390.540245	1168.59891	0.11391	4.4486E-05	0.32629	0.00012743	0.4402	0.00017191	390.874705012193	23.202	0.40759	23.202	23.024	23.432	0					9	7	2	0	0	0	0.46465	1	6329	6329		15.739	3.511	1	4322900			64589	1668	47058	47431	62958	62958					0.02135048594800537
YTNPTVRRY	9	Unmodified	_YTNPTVRRY_					0	0	0		ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	MULTI-MSMS	A375_MHC_IP_R2	2	585.7064819335938	2	585.306729	1168.59891	-0.80935	-0.00047372	0.45325	0.00026529	-0.3561	-0.00020843	585.3068231218177	20.016	0.40322	20.626	20.349	20.752	0.61029					11	7	2	0	0	0	0.72985	1	6234	6234		4.3292	0	1	1069700			64590	1668	47058	47431	62959	62959					0.02135048594800537
YTNPTVRRY	9	Unmodified	_YTNPTVRRY_					0	0	0		ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	MULTI-MSMS	A375_MHC_IP_R2	2	390.94012451171875	3	390.540245	1168.59891	-0.48266	-0.0001885	0.37925	0.00014811	-0.10341	-4.0385E-05	390.5403291850538	20.008	1.0153	20.618	19.993	21.008	0.61029					47	19	3	0	0	0	0.55471	1	6258	6258		12.175	6.3913	1	9753300			64591	1668	47058	47431	62960	62960					0.02135048594800537
YTNREPGP	8	Unmodified	_YTNREPGP_					0	0	0			REV__ENSG00000167210|ENST00000642948|LOXHD1	REV__ENSG00000167210|ENST00000642948|LOXHD1	MSMS	A375_MHC_IP_R2	2	467.0075378417969	2	467.224874	932.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.27	1	146.29	145.79	146.79	0.019913								0	0	0	0.16876	1	56978	56978		0.79363	0	1		+		64592	20742	47059	47432	62961	62961					-0.03372549176094708
YTNSITVNYL	10	Unmodified	_YTNSITVNYL_					0	0	0			REV__VTCN1|p.N220S|1|0.41|ENSG00000134258|chr1:117153156-117153156|T/C|missense_variant	REV__VTCN1|p.N220S|1|0.41|ENSG00000134258|chr1:117153156-117153156|T/C|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	594.2124633789062	2	594.300778	1186.587	-0.6111	-0.00036317	-0.47717	-0.00028358	-1.0883	-0.00064676	594.3007199922466	48.651	0.45844	49.408	49.13	49.588	0.75737					11	8	2	0	0	0	0.6774	1	18276	18276		27.629	0	1	2564100	+		64593	28987	47060	47433	62962	62962					0.0011738706095911766
YTPAYKKNT	9	Unmodified	_YTPAYKKNT_					0	0	0			REV__tr|U7T8Q4|U7T8Q4_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00130PE=3SV=1	REV__tr|U7T8Q4|U7T8Q4_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00130PE=3SV=1	MULTI-MSMS	A375_MHC_IP_R2	2	362.9254150390625	3	362.525713	1084.55531	-0.35251	-0.0001278	-0.86543	-0.00031374	-1.2179	-0.00044154	362.5256091973421	34.374	2.133	35.126	34.904	37.037	0.75225					69	41	2	0	0	0	0.6656	1	12458	12458		6.6304	0.43853	1	2358300	+		64594	28890	47061	47434	62963	62963					0.0164143909764789
YTPEPDTPNGN	11	Unmodified	_YTPEPDTPNGN_					0	0	0		tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1	tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1	tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1	MSMS	A375_MHC_IP_R1	1	602.7418823242188	2	602.759475	1203.5044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.501	1	57.501	57.001	58.001	0								0	0	0	0.16108	1	20629	20629		13.042	2.9685	1				64595	29571	47062	47435	62964	62964					-0.08921554737844417
YTPGKKKKKKL	11	Unmodified	_YTPGKKKKKKL_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.R305Afs*2|1|0.44|ENSG00000111642|chr12:6600941-6600942|-/T|frameshift_variant	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MSMS	A375_MHC_IP_R2	2	659.6943359375	2	659.932097	1317.84964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.179	1	54.93	54.43	55.43	0.75082								0	0	0	0.16297	1	20450	20450		3.2813	2.823	1				64596	3005	47063	47436	62965	62965					0.20343052587395505
YTPHFIRVIAH	11	Unmodified	_YTPHFIRVIAH_					0	0	0			REV__ENST00000609670.1_1_19:15756567-15757926:+|nuORF	REV__ENST00000609670.1_1_19:15756567-15757926:+|nuORF	MSMS	A375_MHC_IP_R2	2	677.7745971679688	2	677.374946	1352.73534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.0379	1	8.453	7.953	8.953	0.4151								0	0	0	0.1636	1	2523	2523		0	0	1		+		64597	21975	47064	47437	62966	62966					0.07308162825347608
YTPLELQYI	9	Unmodified	_YTPLELQYI_					0	0	0		ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	MULTI-SECPEP	A375_MHC_IP_R2	2	570.1432495117188	2	570.30279	1138.59103	-0.50604	-0.00028859	-1.1408	-0.00065058	-1.6468	-0.00093917	571.306877659696	50.142	0.2526	50.896	50.753	51.006	0.75406					9	4	3	0	0	0	0.58271	1	18865	18865		20.454	0	1	731000			64598	3141	47065	47438	62967	62967					0.027274765546962954
YTPPAGAKV	9	Unmodified	_YTPPAGAKV_					0	0	0		nc|ENSG00000136813|Q5VYK3|ECPAS;ENSG00000136813|ENST00000684092|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-SECPEP	A375_MHC_IP_R1	1	452.6487121582031	2	452.25036	902.486168	-0.35146	-0.00015895	-1.1339	-0.00051282	-1.4854	-0.00067177	452.2496838713181	27.783	0.75675	27.783	27.331	28.088	0					26	14	3	0	0	0	0.35487	1	8441	8441		29.082	4.4077	1	4494500			64599	4820	47066	47439	62968	62968					0.031023998687601306
YTPPAGAKV	9	Unmodified	_YTPPAGAKV_					0	0	0		nc|ENSG00000136813|Q5VYK3|ECPAS;ENSG00000136813|ENST00000684092|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-SECPEP	A375_MHC_IP_R2	2	452.6479797363281	2	452.25036	902.486168	-0.28631	-0.00012948	-0.97048	-0.0004389	-1.2568	-0.00056838	452.24968582443574	27.166	0.66574	27.845	27.433	28.098	0.67857					27	12	3	0	0	0	0.35487	1	9234	9234		36.127	11.453	1	4756600			64600	4820	47066	47439	62969	62969					0.031023998687601306
YTPPETPME	9	Unmodified	_YTPPETPME_					0	0	0		nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B	nc|ENSG00000156650|Q8WYB5-3|KAT6B	nc|ENSG00000156650|Q8WYB5-3|KAT6B	MULTI-SECPEP	A375_MHC_IP_R1	1	533.1336669921875	2	532.733883	1063.45321	-0.8013	-0.00042688	-0.32605	-0.0001737	-1.1274	-0.00060058	532.7338814841746	32.375	0.51054	32.375	32.024	32.535	0					13	9	2	0	0	0	0.65246	1	10478	10478		21.747	4.8044	1	2626200			64601	6202	47067	47440	62970	62970					-0.07597595036259008
YTPPPPPTA	9	Unmodified	_YTPPPPPTA_					0	0	0		nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	MULTI-MSMS	A375_MHC_IP_R1	1	470.6480712890625	2	470.742368	939.470183	-0.19696	-9.272E-05	-0.064422	-3.0326E-05	-0.26139	-0.00012305	470.74229421522807	42.646	1.1171	42.646	42.233	43.351	0					40	21	2	0	0	0	0.018546	1	14961	14961		85.272	45.315	1	12925000			64602	2589;14524	47068	47441	62971	62971					-0.001973063681475651
YTPPPPPTA	9	Unmodified	_YTPPPPPTA_					0	0	0		nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	MULTI-SECPEP	A375_MHC_IP_R2	2	471.1420593261719	2	470.742368	939.470183	-0.5428	-0.00025552	-0.083809	-3.9452E-05	-0.62661	-0.00029497	470.74223404618607	42.112	1.4266	42.884	42.399	43.826	0.7724					50	27	2	0	0	0	0.037185	1	15567	15567		85.272	17.928	1	17864000			64603	2589;14524	47068	47441	62972	62972					-0.001973063681475651
YTPRKEDE	8	Unmodified	_YTPRKEDE_					0	0	0		ENSG00000154447|ENST00000284637|SH3RF1	ENSG00000154447|ENST00000284637|SH3RF1	ENSG00000154447|ENST00000284637|SH3RF1	MULTI-MSMS	A375_MHC_IP_R1	1	519.676025390625	2	519.248546	1036.48254	-0.31585	-0.000164	0.32563	0.00016908	0.0097805	5.0785E-06	519.2485928764368	39.22	0.5591	39.22	38.882	39.441	0					13	10	2	0	0	0	0.7754	2	13406	13406;13425		11.64	4.3511	1	1972900			64604	6088	47069	47442	62973;62974	62973					-0.034243146957578574
YTPRKEDE	8	Unmodified	_YTPRKEDE_					0	0	0		ENSG00000154447|ENST00000284637|SH3RF1	ENSG00000154447|ENST00000284637|SH3RF1	ENSG00000154447|ENST00000284637|SH3RF1	MULTI-MATCH	A375_MHC_IP_R2	2		2	519.248546	1036.48254	-1.0549	-0.00054777	-0.17639	-9.159E-05	-1.2313	-0.00063935	519.2486147196364	38.581	0.55964	39.355	38.997	39.556	0.77451	0.06735	-0.00039873	NaN	11.64	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1452800			64605	6088	47069	47442							-0.034243146957578574
YTQDLQQY	8	Unmodified	_YTQDLQQY_					0	0	0			REV__ENSG00000198837|ENST00000361217|DENND4B	REV__ENSG00000198837|ENST00000361217|DENND4B	MULTI-MSMS	A375_MHC_IP_R1	1	529.7031860351562	2	529.743096	1057.47164	-0.31871	-0.00016884	1.5412	0.00081643	1.2225	0.0006476	529.7438043987935	21.455	0.71021	21.455	21.098	21.808	0					19	13	2	0	0	0	0.77624	1	5534	5534		8.5933	0.68312	1	1135000	+		64606	22427	47070	47443	62975	62975					-0.05479717070033985
YTQDLQQY	8	Unmodified	_YTQDLQQY_					0	0	0			REV__ENSG00000198837|ENST00000361217|DENND4B	REV__ENSG00000198837|ENST00000361217|DENND4B	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	529.743096	1057.47164	-0.31871	-0.00016884	1.5412	0.00081643	1.2225	0.0006476	529.7438043987935	21.455	0.71021	21.455	21.098	21.808	0	0	0	NaN	8.5933	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1135000	+		64607	22427	47070	47443							-0.05479717070033985
YTQFQEPY	8	Unmodified	_YTQFQEPY_					0	0	0		TM6SF1|p.D259N|1|0.41|ENSG00000136404|chr15:83126821-83126821|G/A|missense_variant;ENSG00000136404|ENST00000322019|TM6SF1	TM6SF1|p.D259N|1|0.41|ENSG00000136404|chr15:83126821-83126821|G/A|missense_variant	TM6SF1|p.D259N|1|0.41|ENSG00000136404|chr15:83126821-83126821|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	539.6454467773438	2	538.24019	1074.46583	-0.85278	-0.000459	-2.1332	-0.0011482	-2.986	-0.0016072	538.2382218734313	27.022	0.65292	27.022	26.779	27.432	0					39	12	5	0	0	0	0.76248	1	8133	8133		16.942	2.3606	1	25799000			64608	4785	47071	47444	62976	62976					-0.06842815581717332
YTQNYFQK	8	Unmodified	_YTQNYFQK_					0	0	0			REV__nc|ENSG00000164164|Q01804-5|OTUD4	REV__nc|ENSG00000164164|Q01804-5|OTUD4	MULTI-MSMS	A375_MHC_IP_R1	1	546.2335205078125	2	546.261456	1090.50836	-0.475	-0.00025948	2.3013	0.0012571	1.8263	0.00099762	546.2624812881302	55.706	0.56023	55.706	55.381	55.941	0					14	10	2	0	0	0	0.75322	1	19904	19904		19.439	0.18201	1	1092900	+		64609	20460	47072	47445	62977	62977					-0.03327420453479135
YTQQATQSY	9	Unmodified	_YTQQATQSY_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487509.6_1_16:31191511-31196501:+|nuORF;ENST00000487045.6_1_16:31191511-31194161:+|nuORF	nc|ENSG00000089280|P35637-2|FUS;ENST00000487045.6_1_16:31191511-31194161:+|nuORF	nc|ENSG00000089280|P35637-2|FUS	MULTI-MSMS	A375_MHC_IP_R1	1	545.6458129882812	2	545.246003	1088.47745	-0.86225	-0.00047014	0.34081	0.00018583	-0.52144	-0.00028431	545.2461313035021	26.399	0.85624	26.399	26.221	27.078	0					30	16	3	0	0	0	0.0028938	1	7890	7890		157.8	93.559	1	7632600			64610	1925;12590	47073	47446	62978	62978					-0.06324618558369366
YTQQATQSY	9	Unmodified	_YTQQATQSY_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487509.6_1_16:31191511-31196501:+|nuORF;ENST00000487045.6_1_16:31191511-31194161:+|nuORF	nc|ENSG00000089280|P35637-2|FUS;ENST00000487045.6_1_16:31191511-31194161:+|nuORF	nc|ENSG00000089280|P35637-2|FUS	MULTI-MSMS	A375_MHC_IP_R2	2	545.6455688476562	2	545.246003	1088.47745	-1.2319	-0.00067166	0.25697	0.00014011	-0.97489	-0.00053155	545.2461032180324	25.936	0.81315	26.596	26.449	27.262	0.65992					24	15	2	0	0	0	0.0061124	1	8741	8741		133.05	87.031	1	5902000			64611	1925;12590	47073	47446	62979	62979					-0.06324618558369366
YTQSEDNIY	9	Unmodified	_YTQSEDNIY_					0	0	0		nc|ENSG00000175984|Q68D51-2|DENND2C;nc|ENSG00000175984|Q68D51-3|DENND2C;ENSG00000175984|ENST00000393274|DENND2C	nc|ENSG00000175984|Q68D51-2|DENND2C	nc|ENSG00000175984|Q68D51-2|DENND2C	MSMS	A375_MHC_IP_R2	2	566.7057495117188	2	566.743293	1131.47203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.361	1	34.113	33.613	34.613	0.75225								0	0	0	0.15486	1	11946	11946		7.2892	0	1				64612	7991	47074	47447	62980	62980					-0.08844342140855588
YTREWQQN	8	Unmodified	_YTREWQQN_					0	0	0			REV__nc|ENSG00000115414|P02751-2|FN1;REV__nc|ENSG00000115414|P02751-4|FN1	REV__nc|ENSG00000115414|P02751-4|FN1	MULTI-MSMS	A375_MHC_IP_R2	2	562.710205078125	2	562.759612	1123.50467	-0.50243	-0.00028275	2.8815	0.0016216	2.3791	0.0013389	563.2632171735487	105.23	0.25377	106	105.77	106.02	0.76308					5	4	2	0	0	0	0.77028	1	39726	39726		14.838	2.3067	1	985460	+		64613	27187;17883	47075	47448	62981	62981					-0.052140902273322354
YTRHFHRY	8	Unmodified	_YTRHFHRY_					0	0	0			REV__ENSG00000182324|ENST00000342291|KCNJ14	REV__ENSG00000182324|ENST00000342291|KCNJ14	MULTI-MSMS	A375_MHC_IP_R1	1	590.6928100585938	2	590.293956	1178.57336	-0.45278	-0.00026727	-0.42929	-0.0002534	-0.88206	-0.00052068	590.2934940824924	84.037	0.65772	84.037	83.634	84.292	0					17	12	2	0	0	0	0.69583	1	30767	30767		36.044	6.9626	1	3031600	+		64614	21682	47076	47449	62982	62982					-0.008783811369539762
YTRHFHRY	8	Unmodified	_YTRHFHRY_					0	0	0			REV__ENSG00000182324|ENST00000342291|KCNJ14	REV__ENSG00000182324|ENST00000342291|KCNJ14	MULTI-MSMS	A375_MHC_IP_R2	2	590.6928100585938	2	590.293956	1178.57336	-0.54588	-0.00032223	-1.2826	-0.0007571	-1.8285	-0.0010793	590.2934981762095	83.214	0.65862	83.953	83.544	84.203	0.73962					15	12	2	0	0	0	0.68328	1	31637	31637		39.957	10.876	1	2376600	+		64615	21682	47076	47449	62983	62983					-0.008783811369539762
YTRHFHRY	8	Unmodified	_YTRHFHRY_					0	0	0			REV__ENSG00000182324|ENST00000342291|KCNJ14	REV__ENSG00000182324|ENST00000342291|KCNJ14	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	590.293956	1178.57336	-0.54588	-0.00032223	-1.2826	-0.0007571	-1.8285	-0.0010793	590.2934981762095	83.214	0.65862	83.953	83.544	84.203	0.73962	-0.0418	-0.00061176	NaN	39.957	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2376600	+		64616	21682	47076	47449							-0.008783811369539762
YTRKKDVP	8	Unmodified	_YTRKKDVP_					0	0	0		nc|ENSG00000108021|Q5VWN6-2|TASOR2;ENSG00000108021|ENST00000695737|TASOR2	nc|ENSG00000108021|Q5VWN6-2|TASOR2	nc|ENSG00000108021|Q5VWN6-2|TASOR2	MULTI-SECPEP	A375_MHC_IP_R1	1	503.6167907714844	2	503.787641	1005.56073	-0.27595	-0.00013902	-1.0427	-0.00052528	-1.3186	-0.0006643	503.78674135397216	28.617	0.45612	28.617	28.238	28.694	0					12	8	2	0	0	0	0.972	1	8750	8750		5.7604	0	1	3676100			64617	2779	47077	47450	62984	62984					0.05817162680136789
YTRKWRRRRRR	11	Unmodified	_YTRKWRRRRRR_					0	0	0		ENST00000306085.10_3_7:100730337-100730388:+|nuORF	ENST00000306085.10_3_7:100730337-100730388:+|nuORF	ENST00000306085.10_3_7:100730337-100730388:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	845.9081420898438	2	845.509089	1689.00362	-0.50602	-0.00042785	-0.017257	-1.4591E-05	-0.52328	-0.00044244	845.5086855990369	148.55	1.3393	148.57	147.92	149.26	0.018707					65	31	3	0	0	0	0.73934	1	57692	57692		0	0	1	215670			64618	10573	47078	47451	62985	62985					0.18668319916105247
YTRKWRRRRRR	11	Unmodified	_YTRKWRRRRRR_					0	0	0		ENST00000306085.10_3_7:100730337-100730388:+|nuORF	ENST00000306085.10_3_7:100730337-100730388:+|nuORF	ENST00000306085.10_3_7:100730337-100730388:+|nuORF	MSMS	A375_MHC_IP_R2	2	845.4627075195312	2	845.509089	1689.00362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.73	1	115.42	114.92	115.92	0.68999								0	0	0	0.1636	1	43246	43246		0	0	1				64619	10573	47078	47451	62986	62986					0.18668319916105247
YTRPPLARL	9	Unmodified	_YTRPPLARL_					0	0	0		ENST00000526148.5_2_11:10829311-10829500:-|nuORF	ENST00000526148.5_2_11:10829311-10829500:-|nuORF	ENST00000526148.5_2_11:10829311-10829500:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	362.59051513671875	3	362.885464	1085.63456	0.18954	6.8781E-05	-1.0563	-0.00038333	-0.8668	-0.00031455	362.88487371032306	57.56	0.56026	57.56	57.211	57.771	0					16	10	2	0	0	0	0.71541	1	20666	20666		11.495	3.3392	1	2137100			64620	13079	47079	47452	62987	62987					0.09517130842482402
YTRQILEGMS	10	Unmodified	_YTRQILEGMS_					0	0	0		ENSG00000198909|ENST00000361733|MAP3K3;nc|ENSG00000198909|Q99759-2|MAP3K3	ENSG00000198909|ENST00000361733|MAP3K3	ENSG00000198909|ENST00000361733|MAP3K3	MULTI-SECPEP	A375_MHC_IP_R2	2	598.6942749023438	2	599.300255	1196.58596	-0.67783	-0.00040623	-1.9682	-0.0011795	-2.646	-0.0015857	599.2989566029482	55.003	0.61337	55.754	55.37	55.984	0.75075					16	11	2	0	0	0	0.60238	1	20744	20744		20.415	2.0414	1	2498100			64621	9364	47080	47453	62988	62988					-0.004471505795891062
YTRQILEGMS	10	Unmodified	_YTRQILEGMS_					0	0	0		ENSG00000198909|ENST00000361733|MAP3K3;nc|ENSG00000198909|Q99759-2|MAP3K3	ENSG00000198909|ENST00000361733|MAP3K3	ENSG00000198909|ENST00000361733|MAP3K3	MULTI-MATCH	A375_MHC_IP_R1	1		2	599.300255	1196.58596	-0.33144	-0.00019863	-2.9649	-0.0017769	-3.2964	-0.0019755	599.2982142414243	55.696	0.45772	55.696	55.533	55.991	0	-0.028957	-0.00051562	NaN	20.415	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1218300			64622	9364	47080	47453							-0.004471505795891062
YTRWKDWESWY	11	Unmodified	_YTRWKDWESWY_					0	0	0		ENSG00000019995|ENST00000359653|ZRANB1	ENSG00000019995|ENST00000359653|ZRANB1	ENSG00000019995|ENST00000359653|ZRANB1	MULTI-MSMS	A375_MHC_IP_R1	1	810.7680053710938	2	810.367515	1618.72048	0.051197	4.1489E-05	0.6356	0.00051507	0.6868	0.00055656	810.3678572490965	49.342	0.55755	49.342	49.033	49.591	0					21	10	3	0	0	0	0.73934	1	17432	17432		0	0	1	4386600			64623	1055	47081	47454	62989	62989					-0.06413373833311198
YTRWKDWESWY	11	Unmodified	_YTRWKDWESWY_					0	0	0		ENSG00000019995|ENST00000359653|ZRANB1	ENSG00000019995|ENST00000359653|ZRANB1	ENSG00000019995|ENST00000359653|ZRANB1	MULTI-MSMS	A375_MHC_IP_R2	2	811.2694091796875	2	810.367515	1618.72048	-0.92415	-0.0007489	0.57575	0.00046657	-0.34839	-0.00028233	810.3681176927753	48.633	0.50997	49.391	49.18	49.69	0.75737					20	9	3	0	0	0	0.73934	2	18269	18269;18274		0	0	1	3364400			64624	1055	47081	47454	62990;62991	62990					-0.06413373833311198
YTRWKDWESWY	11	Unmodified	_YTRWKDWESWY_					0	0	0		ENSG00000019995|ENST00000359653|ZRANB1	ENSG00000019995|ENST00000359653|ZRANB1	ENSG00000019995|ENST00000359653|ZRANB1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	810.367515	1618.72048	0.051197	4.1489E-05	0.6356	0.00051507	0.6868	0.00055656	810.3678572490965	49.342	0.55755	49.342	49.033	49.591	0	-0.024206	5.4198E-05	NaN	0	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4386600			64625	1055	47081	47454							-0.06413373833311198
YTRYYIERINY	11	Unmodified	_YTRYYIERINY_					0	0	0			REV__tr|U7T3W5|U7T3W5_FUSNUProteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00640PE=4SV=1	REV__tr|U7T3W5|U7T3W5_FUSNUProteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00640PE=4SV=1	MSMS	A375_MHC_IP_R2	2	518.6769409179688	3	518.596419	1552.76743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.796	1	48.557	48.057	49.057	0.76128								0	0	0	0.16334	1	17934	17934		1.3296	0.87513	1		+		64626	28788	47082	47455	62992	62992					0.01315485717827869
YTSDDFWYC	9	Unmodified	_YTSDDFWYC_					0	0	0		TDRD1|p.R1009C|1|0.17|ENSG00000095627|chr10:114226066-114226066|C/T|missense_variant	TDRD1|p.R1009C|1|0.17|ENSG00000095627|chr10:114226066-114226066|C/T|missense_variant	TDRD1|p.R1009C|1|0.17|ENSG00000095627|chr10:114226066-114226066|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	600.6216430664062	2	600.221139	1198.42773	-0.49642	-0.00029796	1.8229	0.0010942	1.3265	0.00079621	600.2222453959894	46.654	0.55696	46.654	46.395	46.952	0					12	10	2	0	0	0	0.64808	1	16404	16404		11.64	3.7301	1	2134100			64627	29315	47083	47456	62993	62993					-0.16355069558676405
YTSDYFISY	9	Unmodified	_YTSDYFISY_					0	0	0		nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-5|ETS1;nc|ENSG00000134954|P14921-2|ETS1;ETS1|p.Q249Pfs*5|1|0.74|ENSG00000134954|chr11:128480438-128480439|-/C|frameshift_variant	nc|ENSG00000134954|P14921|ETS1	nc|ENSG00000134954|P14921|ETS1	MULTI-SECPEP	A375_MHC_IP_R1	1	580.1528930664062	2	579.75313	1157.49171	-0.14488	-8.3996E-05	-0.35014	-0.00020299	-0.49502	-0.00028699	579.7531066783316	101.32	1.6703	101.32	100.08	101.75	0					55	32	3	0	0	0	0.023756	1	37176	37176		104.8	37.455	1	19220000			64628	14614	47084	47457	62994	62994					-0.08073966130086774
YTSDYFISY	9	Unmodified	_YTSDYFISY_					0	0	0		nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-5|ETS1;nc|ENSG00000134954|P14921-2|ETS1;ETS1|p.Q249Pfs*5|1|0.74|ENSG00000134954|chr11:128480438-128480439|-/C|frameshift_variant	nc|ENSG00000134954|P14921|ETS1	nc|ENSG00000134954|P14921|ETS1	MULTI-MSMS	A375_MHC_IP_R2	2	580.7522583007812	2	579.75313	1157.49171	-0.10389	-6.0232E-05	-0.29544	-0.00017128	-0.39933	-0.00023152	579.7530484237323	100.71	1.3299	101.47	100.57	101.9	0.76278					50	25	3	0	0	0	0.11296	1	38141	38141		48.346	19.859	1	22755000			64629	14614	47084	47457	62995	62995					-0.08073966130086774
YTSEVERCNY	10	Unmodified	_YTSEVERCNY_					0	0	0			REV__PCDH12|p.A755V|1|0.33|ENSG00000113555|chr5:141955588-141955588|G/A|missense_variant	REV__PCDH12|p.A755V|1|0.33|ENSG00000113555|chr5:141955588-141955588|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	632.1854858398438	2	632.269152	1262.52375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.956	1	66.694	66.194	67.194	0.73811								0	0	0	0.15417	1	25009	25009		7.2892	1.5574	1		+		64630	27722	47085	47458	62996	62996					-0.09700921718581412
YTSIMIACSPA	11	Unmodified	_YTSIMIACSPA_					0	0	0			REV__ENST00000591006.5_1_17:42397371-42398600:-|nuORF	REV__ENST00000591006.5_1_17:42397371-42398600:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	578.7051391601562	2	578.772485	1155.53042	-0.13745	-7.9552E-05	0.068366	3.9569E-05	-0.069083	-3.9983E-05	578.7727040578878	54.63	0.50869	54.63	54.415	54.924	0					32	9	4	0	0	0	0.67989	1	19545	19545		17.113	1.8644	1	6008700	+		64631	16231	47086	47459	62997	62997					-0.041127000915821554
YTSPESIFRN	10	Unmodified	_YTSPESIFRN_					0	0	0			REV__ENST00000607927.1_1_22:18560886-18561522:-|nuORF	REV__ENST00000607927.1_1_22:18560886-18561522:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	607.6962890625	2	607.296027	1212.5775	-0.18322	-0.00011127	-0.24043	-0.00014601	-0.42366	-0.00025728	607.2957842348561	82.139	0.71131	82.139	81.758	82.469	0					32	13	3	0	0	0	0.52785	1	29979	29979		26.268	1.2772	1	9620100	+		64632	26554	47087	47460	62998	62998					-0.020283812245452282
YTSPESIFRN	10	Unmodified	_YTSPESIFRN_					0	0	0			REV__ENST00000607927.1_1_22:18560886-18561522:-|nuORF	REV__ENST00000607927.1_1_22:18560886-18561522:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	607.6962890625	2	607.296027	1212.5775	-0.18322	-0.00011127	-0.24043	-0.00014601	-0.42366	-0.00025728	607.2957842348561	82.139	0.71131	82.139	81.758	82.469	0					32	13	3	0	0	0	0.70528	1	29979	29979		26.268	1.2772	1	9620100	+		64633	26554	47087	47460	62999	62999					-0.020283812245452282
YTSPGTQKY	9	Unmodified	_YTSPGTQKY_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	A375_MHC_IP_R1	1	523.1531372070312	2	522.753464	1043.49238	-0.59281	-0.00030989	0.15139	7.914E-05	-0.44142	-0.00023075	523.2550279775396	23.252	0.35672	23.252	23.024	23.381	0					10	6	2	0	0	0	0.0098926	1	6372	6372		118.07	43.139	1	8747100			64634	1349	47088	47461	63000	63000					-0.027631266903881624
YTSPGTQKY	9	Unmodified	_YTSPGTQKY_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-SECPEP	A375_MHC_IP_R1	1	523.1535034179688	2	522.753464	1043.49238	-0.26905	-0.00014065	-0.29508	-0.00015425	-0.56413	-0.0002949	522.7532854682272	21.326	0.60942	21.326	20.946	21.555	0					32	11	4	0	0	0	0.019499	1	5528	5528		114.2	55.523	1	37415000			64635	1349	47088	47461	63001	63001					-0.027631266903881624
YTSPGTQKY	9	Unmodified	_YTSPGTQKY_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-SECPEP	A375_MHC_IP_R2	2	523.153076171875	2	522.753464	1043.49238	-0.92025	-0.00048107	-0.47994	-0.00025089	-1.4002	-0.00073196	522.7532387600153	22.865	0.40903	23.495	23.265	23.675	0.63014					11	7	2	0	0	0	0.34746	1	7314	7314		45.7	11.298	1	3833600			64636	1349	47088	47461	63002	63002					-0.027631266903881624
YTSPGTQKY	9	Unmodified	_YTSPGTQKY_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-SECPEP	A375_MHC_IP_R2	2	523.1528930664062	2	522.753464	1043.49238	-0.87672	-0.00045831	-0.12837	-6.7106E-05	-1.0051	-0.00052541	522.7533550211591	19.862	0.86259	20.472	20.095	20.958	0.61029					49	16	4	0	0	0	0.036758	1	6052	6052		99.755	41.076	1	17467000			64637	1349	47088	47461	63003	63003					-0.027631266903881624
YTSPSAPPCEE	11	Unmodified	_YTSPSAPPCEE_					0	0	0			REV__nc|ENSG00000005379|O95153-2|TSPOAP1	REV__nc|ENSG00000005379|O95153-2|TSPOAP1	MULTI-MSMS	A375_MHC_IP_R2	2	590.7041015625	2	590.744979	1179.4754	-0.39657	-0.00023427	-1.1438	-0.00067568	-1.5404	-0.00090996	590.7436694002088	100.73	0.7686	101.49	100.88	101.65	0.76278					20	14	2	0	0	0	0.69231	1	38120	38120		16.149	0	1	1905100	+		64638	16121	47089	47462	63004	63004					-0.10715415358504288
YTSQLCKY	8	Unmodified	_YTSQLCKY_					0	0	0		nc|ENSG00000240268|A6NHM9|MOXD2P	nc|ENSG00000240268|A6NHM9|MOXD2P	nc|ENSG00000240268|A6NHM9|MOXD2P	MULTI-SECPEP	A375_MHC_IP_R1	1	503.1374816894531	2	503.239135	1004.46372	-0.48109	-0.0002421	0.34256	0.00017239	-0.13854	-6.9717E-05	503.23954070849743	28.826	0.50619	28.826	28.592	29.098	0					12	9	2	0	0	0	0.97144	1	8912	8912		9.3474	0	1	1115500			64639	14911	47090	47463	63005	63005					-0.03833567591175324
YTSRAKLW	8	Unmodified	_YTSRAKLW_					0	0	0		ENST00000488494.5_1_10:33221437-33221518:-|nuORF;ENST00000423113.5_1_10:33218934-33221518:-|nuORF	ENST00000488494.5_1_10:33221437-33221518:-|nuORF	ENST00000488494.5_1_10:33221437-33221518:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	513.181884765625	2	512.782359	1023.55016	-0.54351	-0.0002787	1.651	0.0008466	1.1075	0.00056789	512.7824209222066	34.497	0.50606	34.497	34.253	34.759	0					19	9	3	0	0	0	0.88903	1	11407	11407		30.637	10.183	1	2282500			64640	11756	47091	47464	63006	63006					0.03933180025705951
YTSRRGLSGV	10	Unmodified	_YTSRRGLSGV_					0	0	0			REV__nc|ENSG00000100490|Q00532-2|CDKL1	REV__nc|ENSG00000100490|Q00532-2|CDKL1	MULTI-MSMS	A375_MHC_IP_R2	2	1095.990966796875	1	1095.59053	1094.58326	0.28732	0.00031479	0.035068	3.842E-05	0.32239	0.00035321	1095.590351492062	146.63	0.14281	146.65	146.57	146.71	0.019913					19	12	2	0	0	0	0.72747	1	57081	57081		0	0	1	366990	+		64641	27143	47092	47465	63007	63007					0.03974762077791638
YTSRSPGL	8	Unmodified	_YTSRSPGL_					0	0	0		ENSG00000179008|ENST00000321731|C14orf39	ENSG00000179008|ENST00000321731|C14orf39	ENSG00000179008|ENST00000321731|C14orf39	MULTI-SECPEP	A375_MHC_IP_R1	1	440.6055603027344	2	440.729792	879.445031	-0.29724	-0.000131	1.1431	0.00050382	0.84591	0.00037282	440.73005273761174	27.868	0.25204	27.868	27.735	27.987	0					7	4	2	0	0	0	0.92636	1	8477	8477		11.64	0	1	771920			64642	8198	47093	47466	63008	63008					0.00048638829287028784
YTSVYSHTT	9	Unmodified	_YTSVYSHTT_					0	0	0		nc|ENSG00000187556|P60323|NANOS3;ENSG00000187556|ENST00000339133|NANOS3	nc|ENSG00000187556|P60323|NANOS3	nc|ENSG00000187556|P60323|NANOS3	MULTI-MSMS	A375_MHC_IP_R2	2	530.142578125	2	529.743096	1057.47164	-0.88851	-0.00047068	0.076607	4.0582E-05	-0.8119	-0.0004301	529.7429758810053	19.864	0.45415	20.474	20.146	20.6	0.61029					14	8	2	0	0	0	0.58047	1	6115	6115		15.847	0	1	1016400			64643	8837	47094	47467	63009	63009					-0.05479717070033985
YTSYPMHDFY	10	Unmodified	_YTSYPMHDFY_					0	0	0		nc|ENSG00000138081|Q86XK2-5|FBXO11;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-6|FBXO11	nc|ENSG00000138081|Q86XK2-5|FBXO11	nc|ENSG00000138081|Q86XK2-5|FBXO11	MULTI-MSMS	A375_MHC_IP_R1	1	662.6703491210938	2	662.271164	1322.52777	-0.41623	-0.00027566	-0.41598	-0.00027549	-0.83221	-0.00055115	662.2707580390329	70.4	0.46229	70.4	70.185	70.648	0					21	8	3	0	0	0	0.0038543	1	25561	25561		99.799	68.531	1	3780500			64644	4955	47095	47468	63010	63010					-0.12058832224875005
YTSYPMHDFY	10	Unmodified	_YTSYPMHDFY_					0	0	0		nc|ENSG00000138081|Q86XK2-5|FBXO11;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-6|FBXO11	nc|ENSG00000138081|Q86XK2-5|FBXO11	nc|ENSG00000138081|Q86XK2-5|FBXO11	MULTI-MSMS	A375_MHC_IP_R2	2	662.6707153320312	2	662.271164	1322.52777	-0.79352	-0.00052553	0.4082	0.00027034	-0.38532	-0.00025518	662.2712595757447	69.865	0.55998	70.599	70.335	70.895	0.73421					21	10	3	0	0	0	0.015059	1	26472	26472		88.954	57.686	1	3999100			64645	4955	47095	47468	63011	63011					-0.12058832224875005
YTSYRTYY	8	Unmodified	_YTSYRTYY_					0	0	0		MLT1F1-int_dup148|chr15:38325957-38327301:+|1.4650218780754924|0.4106847790855086|1.83|471.0|59|1|anti-sense	MLT1F1-int_dup148|chr15:38325957-38327301:+|1.4650218780754924|0.4106847790855086|1.83|471.0|59|1|anti-sense	MLT1F1-int_dup148|chr15:38325957-38327301:+|1.4650218780754924|0.4106847790855086|1.83|471.0|59|1|anti-sense	MSMS	A375_MHC_IP_R2	2	559.1506958007812	2	558.753464	1115.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.461	1	27.121	26.621	27.621	0.65992								0	0	0	0.16876	1	8943	8943		8.5933	0.68312	1				64646	14387	47096	47469	63012	63012					-0.0607512669037078
YTTGHWDNY	9	Unmodified	_YTTGHWDNY_					0	0	0		nc|ENSG00000163795|Q8N8E2-3|ZNF513;nc|ENSG00000163795|Q8N8E2-2|ZNF513;ENSG00000163795|ENST00000323703|ZNF513	nc|ENSG00000163795|Q8N8E2-3|ZNF513	nc|ENSG00000163795|Q8N8E2-3|ZNF513	MULTI-MSMS	A375_MHC_IP_R1	1	579.2337036132812	2	578.738345	1155.46214	-0.56589	-0.0003275	0.034041	1.9701E-05	-0.53185	-0.0003078	578.738365424125	41.485	0.76708	41.485	41.164	41.932	0					23	14	3	0	0	0	0.062639	3	14356	14343;14356;14363		59.368	38.915	1	4088900			64647	6721	47097	47470	63013;63014;63015	63014					-0.1093748535558916
YTTGHWDNY	9	Unmodified	_YTTGHWDNY_					0	0	0		nc|ENSG00000163795|Q8N8E2-3|ZNF513;nc|ENSG00000163795|Q8N8E2-2|ZNF513;ENSG00000163795|ENST00000323703|ZNF513	nc|ENSG00000163795|Q8N8E2-3|ZNF513	nc|ENSG00000163795|Q8N8E2-3|ZNF513	MULTI-MSMS	A375_MHC_IP_R2	2	579.2343139648438	2	578.738345	1155.46214	-0.42624	-0.00024668	-0.027389	-1.5851E-05	-0.45362	-0.00026253	578.7382415066528	40.754	0.56023	41.529	41.335	41.895	0.77451					22	10	3	0	0	0	0.2415	2	15083	15083;15100		34.932	16.43	1	4551200			64648	6721	47097	47470	63016;63017	63016					-0.1093748535558916
YTTNQAEPE	9	Unmodified	_YTTNQAEPE_					0	0	0			REV__ENSG00000105388|ENST00000221992|CEACAM5	REV__ENSG00000105388|ENST00000221992|CEACAM5	MULTI-MSMS	A375_MHC_IP_R2	2	526.1950073242188	2	526.730186	1051.44582	-0.81758	-0.00043064	-0.23322	-0.00012284	-1.0508	-0.00055349	526.7299381999084	26.57	0.56025	27.23	27.008	27.568	0.65992					31	10	4	0	0	0	0.60101	1	8999	8999		14.838	0	1	9873900	+		64649	17377	47098	47471	63018	63018					-0.07784611312354173
YTTNQAEPE	9	Unmodified	_YTTNQAEPE_					0	0	0			REV__ENSG00000105388|ENST00000221992|CEACAM5	REV__ENSG00000105388|ENST00000221992|CEACAM5	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	526.730186	1051.44582	-0.64401	-0.00033922	-0.041147	-2.1673E-05	-0.68516	-0.00036089	526.7299507282714	27.129	1.0086	27.129	26.878	27.887	0	-0.050598	0.00010218	NaN	14.838	35	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8855600	+		64650	17377	47098	47471							-0.07784611312354173
YTTNQAEPE	9	Unmodified	_YTTNQAEPE_					0	0	0			REV__ENSG00000105388|ENST00000221992|CEACAM5	REV__ENSG00000105388|ENST00000221992|CEACAM5	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	526.730186	1051.44582	-0.81758	-0.00043064	-0.23322	-0.00012284	-1.0508	-0.00055349	526.7299381999084	26.57	0.56025	27.23	27.008	27.568	0.65992	0.050598	-0.00010016	NaN	14.838	31	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9873900	+		64651	17377	47098	47471							-0.07784611312354173
YTTTRYGSP	9	Unmodified	_YTTTRYGSP_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-SECPEP	A375_MHC_IP_R1	1	523.13134765625	2	523.251089	1044.48762	-0.51989	-0.00027203	-0.72678	-0.00038029	-1.2467	-0.00065232	523.2510323300352	28.82	0.55652	28.82	28.491	29.047	0					14	10	2	0	0	0	0.59098	1	8943	8943		16.149	6.766	1	2172000			64652	8884	47099	47472	63019	63019					-0.032840108331583906
YTVATSTTPPA	11	Unmodified	_YTVATSTTPPA_					0	0	0		ENSG00000079432|ENST00000681038|CIC;nc|ENSG00000079432|Q96RK0-2|CIC	ENSG00000079432|ENST00000681038|CIC	ENSG00000079432|ENST00000681038|CIC	MULTI-SECPEP	A375_MHC_IP_R2	2	555.1793823242188	2	554.779679	1107.5448	-1.0256	-0.00056896	0.64185	0.00035609	-0.38371	-0.00021287	554.7799103100277	41.151	0.35499	41.926	41.794	42.149	0.77451					10	6	2	0	0	0	0.84606	1	15293	15293		27.629	0	1	3090100			64653	1696	47100	47473	63020	63020					-0.00466588347421748
YTVKNAWKNN	10	Unmodified	_YTVKNAWKNN_					0	0	0		ENSG00000160318|ENST00000291715|CLDND2	ENSG00000160318|ENST00000291715|CLDND2	ENSG00000160318|ENST00000291715|CLDND2	MULTI-MSMS	A375_MHC_IP_R1	1	618.7144165039062	2	619.319837	1236.62512	-0.39058	-0.00024189	-0.21636	-0.000134	-0.60694	-0.00037589	619.3196214750035	74.735	0.7607	74.735	74.4	75.16	0					38	14	4	0	0	0	0.63639	1	27228	27228		18.146	1.9972	1	15101000			64654	6416	47101	47474	63021	63021					0.016273177662924354
YTVNLHRI	8	Unmodified	_YTVNLHRI_					0	0	0		ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENSG00000167037|ENST00000400358|SGSM1;ENST00000480523.1_1_22:25240737-25320238:+|nuORF;nc|ENSG00000167037|Q2NKQ1|SGSM1;nc|ENSG00000167037|Q2NKQ1-3|SGSM1	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	508.68731689453125	2	508.287808	1014.56106	-1.0368	-0.00052702	0.16488	8.3808E-05	-0.87196	-0.00044321	508.2878311733499	58.292	0.45768	59.041	58.779	59.237	0.74894					15	8	2	0	0	0	0.8211	1	22044	22044		30.225	0	1	5675600			64655	7149	47102	47475	63022	63022					0.054365823999773966
YTVPGWFH	8	Unmodified	_YTVPGWFH_					0	0	0			REV__nc|ENSG00000148339|Q6KCM7-5|SLC25A25	REV__nc|ENSG00000148339|Q6KCM7-5|SLC25A25	MULTI-SECPEP	A375_MHC_IP_R1	1	503.6167907714844	2	503.742702	1005.47085	-0.49176	-0.00024772	2.896	0.0014589	2.4043	0.0012111	503.7442853877596	28.247	0.50337	28.247	27.937	28.44	0					17	9	3	0	0	0	0.90224	1	8750	8750		19.439	10.846	1	1474300	+		64656	19622	47103	47476	63023	63023					-0.031664669284282354
YTVQRNILDF	10	Unmodified	_YTVQRNILDF_					0	0	0		THOP1|p.P85Lfs*2|1|0.12|ENSG00000172009|chr19:2794787-2794848|CCCCAGCATGTTTCCCCCTCCAAGGACATCCGGACAGCCAGCACAGAGGCCGACAAGAAGCT/-|frameshift_variant;THOP1|p.G330Sfs*14|1|0.38|ENSG00000172009|chr19:2807537-2807538|-/TCGAC|frameshift_variant;ENSG00000172009|ENST00000307741|THOP1	THOP1|p.P85Lfs*2|1|0.12|ENSG00000172009|chr19:2794787-2794848|CCCCAGCATGTTTCCCCCTCCAAGGACATCCGGACAGCCAGCACAGAGGCCGACAAGAAGCT/-|frameshift_variant	THOP1|p.P85Lfs*2|1|0.12|ENSG00000172009|chr19:2794787-2794848|CCCCAGCATGTTTCCCCCTCCAAGGACATCCGGACAGCCAGCACAGAGGCCGACAAGAAGCT/-|frameshift_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	424.29339599609375	3	423.559305	1267.65609	-0.10646	-4.5091E-05	0.14005	5.9318E-05	0.033589	1.4227E-05	423.5593071750389	58.081	0.55731	58.081	57.873	58.43	0					21	10	3	0	0	0	0.92055	1	20873	20873		16.275	7.9881	1	3489100			64657	7671	47104	47477	63024	63024					0.03296471080511765
YTVQRNILDF	10	Unmodified	_YTVQRNILDF_					0	0	0		THOP1|p.P85Lfs*2|1|0.12|ENSG00000172009|chr19:2794787-2794848|CCCCAGCATGTTTCCCCCTCCAAGGACATCCGGACAGCCAGCACAGAGGCCGACAAGAAGCT/-|frameshift_variant;THOP1|p.G330Sfs*14|1|0.38|ENSG00000172009|chr19:2807537-2807538|-/TCGAC|frameshift_variant;ENSG00000172009|ENST00000307741|THOP1	THOP1|p.P85Lfs*2|1|0.12|ENSG00000172009|chr19:2794787-2794848|CCCCAGCATGTTTCCCCCTCCAAGGACATCCGGACAGCCAGCACAGAGGCCGACAAGAAGCT/-|frameshift_variant	THOP1|p.P85Lfs*2|1|0.12|ENSG00000172009|chr19:2794787-2794848|CCCCAGCATGTTTCCCCCTCCAAGGACATCCGGACAGCCAGCACAGAGGCCGACAAGAAGCT/-|frameshift_variant	MULTI-MSMS	A375_MHC_IP_R2	2	423.95880126953125	3	423.559305	1267.65609	-0.53369	-0.00022605	0.24197	0.00010249	-0.29172	-0.00012356	423.5592750833811	57.195	0.50959	57.945	57.662	58.172	0.75011					21	9	4	0	0	0	0.66857	1	21630	21630		15.739	2.8827	1	5253500			64658	7671	47104	47477	63025	63025					0.03296471080511765
YTVRRGKL	8	Unmodified	_YTVRRGKL_					0	0	0			REV__DDX50|p.G156R|1|0.33|ENSG00000107625|chr10:68911073-68911073|G/A|missense_variant	REV__DDX50|p.G156R|1|0.33|ENSG00000107625|chr10:68911073-68911073|G/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	992.999755859375	1	992.599975	991.592698	-0.14891	-0.0001478	0.29497	0.00029279	0.14607	0.00014499	992.5995543973733	144.84	0.14948	144.84	144.77	144.92	0					4	2	2	0	0	0	0.77861	1	55564	55564		0	0	1	255920	+		64659	15978	47105	47478	63026	63026					0.09656575153951508
YTVRVIDVF	9	Unmodified	_YTVRVIDVF_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	A375_MHC_IP_R1	1	556.71044921875	2	556.310949	1110.60735	-0.53854	-0.0002996	0.078437	4.3635E-05	-0.46011	-0.00025596	556.3108113697497	98.839	0.71107	98.839	98.557	99.268	0					30	13	3	0	0	0	0.10622	1	36298	36298		49.554	15.452	1	6565000			64660	3285	47106	47479	63027	63027					0.0564660251143323
YTWAHQFY	8	Unmodified	_YTWAHQFY_					0	0	0			REV__ENSG00000184611|ENST00000332142|KCNH7	REV__ENSG00000184611|ENST00000332142|KCNH7	MSMS	A375_MHC_IP_R2	2	558.1898803710938	2	558.250892	1114.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.63	1	51.384	50.884	51.884	0.75406								0	0	0	0.16876	1	19041	19041		16.942	2.3606	1		+		64661	21827	47107	47480	63028	63028					-0.06543385762347498
YTWFCKKLWQH	11	Unmodified	_YTWFCKKLWQH_					0	0	0			REV__ENSG00000139160|ENST00000357721|ETFBKMT	REV__ENSG00000139160|ENST00000357721|ETFBKMT	MSMS	A375_MHC_IP_R1	1	770.4486694335938	2	770.381914	1538.74928	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.271	1	90.271	89.771	90.771	0								0	0	0	0.16302	1	33172	33172		2.9952	1.5133	1		+		64662	19136	47108	47481	63029	63029					0.001450722621029854
YTWPFPHSSEY	11	Unmodified	_YTWPFPHSSEY_					0	0	0		ENST00000602150.2_2_19:35530497-35530602:+|nuORF	ENST00000602150.2_2_19:35530497-35530602:+|nuORF	ENST00000602150.2_2_19:35530497-35530602:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	471.94512939453125	3	471.875182	1412.60372	-0.072776	-3.4341E-05	-0.36874	-0.000174	-0.44151	-0.00020834	471.87481798072065	22.1	0.65986	22.1	21.86	22.52	0					25	12	4	0	0	0	0.73658	1	5864	5864		2.6312	1.6177	1	5387600			64663	13877	47109	47482	63030	63030					-0.08608112053070727
YTWSSRFWE	9	Unmodified	_YTWSSRFWE_					0	0	0			REV__ENST00000482889.1_1_1:109472820-109486481:-|nuORF	REV__ENST00000482889.1_1_1:109472820-109486481:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	631.9844970703125	2	631.285463	1260.55637	-0.84709	-0.00053475	-0.78459	-0.0004953	-1.6317	-0.0010301	631.2849080311464	66.629	0.45837	66.629	66.326	66.785	0					13	8	2	0	0	0	0.60917	1	24131	24131		25.399	2.663	1	2803700	+		64664	18180	47110	47483	63031	63031					-0.06348346533422955
YTYALEKH	8	Unmodified	_YTYALEKH_					0	0	0			REV__ENSG00000187037|ENST00000334425|GPR141	REV__ENSG00000187037|ENST00000334425|GPR141	MULTI-MSMS	A375_MHC_IP_R1	1	513.158935546875	2	512.758549	1023.50255	-0.95645	-0.00049043	0.69671	0.00035724	-0.25974	-0.00013318	512.7591057921761	29.282	0.40593	29.282	29.047	29.453	0					15	7	3	0	0	0	0.71318	1	9197	9197		30.637	5.9627	1	6585800	+		64665	22006	47111	47484	63032	63032					-0.008265189651524452
YTYLQPAQRY	10	Unmodified	_YTYLQPAQRY_					0	0	0		ENSG00000237988|ENST00000641137|OR2I1P;nc|ENSG00000237988|Q8NGU4|OR2I1P	ENSG00000237988|ENST00000641137|OR2I1P	ENSG00000237988|ENST00000641137|OR2I1P	MULTI-SECPEP	A375_MHC_IP_R2	2	651.9804077148438	2	651.827495	1301.64044	-0.89117	-0.00058089	-2.1111	-0.0013761	-3.0023	-0.001957	651.8258084864771	66.47	0.35753	67.206	67.087	67.445	0.73631					9	6	2	0	0	0	0.93799	1	25211	25211		3.5965	0	1	822770			64666	9761	47112	47485	63033	63033					0.0016818456347209576
YTYLRINFY	9	Unmodified	_YTYLRINFY_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-SECPEP	A375_MHC_IP_R1	1	627.2222290039062	2	626.821681	1251.62881	-0.5405	-0.0003388	0.24352	0.00015264	-0.29698	-0.00018616	626.8219971493617	100.88	0.55605	100.88	100.63	101.19	0					23	10	3	0	0	0	0.38134	1	37099	37099		41.956	29.715	1	1945400			64667	2000	47113	47486	63034	63034					0.013059875401495447
YTYRGPKAF	9	Unmodified	_YTYRGPKAF_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	A375_MHC_IP_R1	1	552.1871948242188	2	551.787641	1101.56073	-0.49654	-0.00027399	-0.040273	-2.2222E-05	-0.53682	-0.00029621	551.7876266918461	34.93	0.91456	34.93	34.557	35.472	0					51	17	4	0	0	0	0.02331	2	11547	11547;11727		80.676	51.594	1	62333000			64668	8493	47114	47487	63035;63036	63035					0.0140116268012207
YTYRGPKAF	9	Unmodified	_YTYRGPKAF_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-SECPEP	A375_MHC_IP_R1	1	368.5942077636719	3	368.194186	1101.56073	0.32831	0.00012088	0.085268	3.1395E-05	0.41358	0.00015228	368.19418205285245	34.958	1.5786	34.958	34.657	36.236	0					78	30	5	0	0	0	0.11436	1	11546	11546		45.74	32.697	1	185820000			64669	8493	47114	47487	63037	63037					0.0140116268012207
YTYRGPKAF	9	Unmodified	_YTYRGPKAF_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	A375_MHC_IP_R2	2	552.1866455078125	2	551.787641	1101.56073	-1.14	-0.00062902	0.16164	8.919E-05	-0.97833	-0.00053983	551.7876255308228	34.149	0.86459	34.901	34.55	35.414	0.75225					52	16	4	0	0	0	0.0090499	1	12281	12281		100.09	69.866	1	86763000			64670	8493	47114	47487	63038	63038					0.0140116268012207
YTYRGPKAF	9	Unmodified	_YTYRGPKAF_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-SECPEP	A375_MHC_IP_R2	2	368.2694091796875	3	368.194186	1101.56073	-0.13908	-5.121E-05	0.023402	8.6166E-06	-0.11568	-4.2593E-05	368.1941540782944	34.177	1.6721	34.929	34.6	36.272	0.75225					79	32	4	0	0	0	0.3213	1	12399	12399		22.658	13.913	1	299980000			64671	8493	47114	47487	63039	63039					0.0140116268012207
YTYTEEDDL	9	Unmodified	_YTYTEEDDL_					0	0	0			REV__tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1	REV__tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1	MSMS	A375_MHC_IP_R2	2	574.7349853515625	2	574.735134	1147.45571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.421	1	19.024	18.524	19.524	0.60308								0	0	0	0.15486	1	5477	5477		0	0	1		+		64672	28794	47115	47488	63040	63040					-0.11211468097621946
YVAAVVVC	8	Unmodified	_YVAAVVVC_					0	0	0			REV__ENST00000361302.7_2_1:100366275-100366326:+|nuORF	REV__ENST00000361302.7_2_1:100366275-100366326:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	412.6189880371094	2	412.222757	822.430961	-0.067991	-2.8028E-05	4.3355	0.0017872	4.2676	0.0017592	412.22950250962396	32.698	0.25079	32.698	32.535	32.785	0					8	4	3	0	0	0	0.76194	1	10608	10608		17.087	4.555	1	1018300	+		64673	23907	47116	47489	63041	63041					0.01264270076626417
YVAAVVVC	8	Unmodified	_YVAAVVVC_					0	0	0			REV__ENST00000361302.7_2_1:100366275-100366326:+|nuORF	REV__ENST00000361302.7_2_1:100366275-100366326:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	412.2837829589844	2	412.222757	822.430961	-0.067991	-2.8028E-05	4.3355	0.0017872	4.2676	0.0017592	412.22950250962396	32.698	0.25079	32.698	32.535	32.785	0					8	4	3	0	0	0	0.85371	1	10584	10584		32.454	4.2804	1	1018300	+		64674	23907	47116	47489	63042	63042					0.01264270076626417
YVAPLKREV	9	Unmodified	_YVAPLKREV_					0	0	0		ENSG00000099910|ENST00000328879|KLHL22;nc|ENSG00000099910|Q53GT1-3|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	MULTI-MSMS	A375_MHC_IP_R1	1	359.28155517578125	3	358.88172	1073.62333	-0.37834	-0.00013578	-0.24199	-8.6845E-05	-0.62033	-0.00022262	358.8817587005643	29.29	0.50807	29.29	28.895	29.403	0					17	9	4	0	0	0	0.53943	1	9167	9167		17.863	2.1245	1	7626600			64675	2092	47117	47490	63043	63043					0.08946308748318188
YVAPLKREV	9	Unmodified	_YVAPLKREV_					0	0	0		ENSG00000099910|ENST00000328879|KLHL22;nc|ENSG00000099910|Q53GT1-3|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	MULTI-SECPEP	A375_MHC_IP_R2	2	358.3128662109375	3	358.88172	1073.62333	-0.70012	-0.00025126	-0.87872	-0.00031536	-1.5788	-0.00056662	358.8816927962419	28.51	0.405	29.189	28.858	29.263	0.67857					10	7	2	0	0	0	0.48845	1	9854	9854		37.075	24.834	1	13278000			64676	2092	47117	47490	63044	63044					0.08946308748318188
YVATKVSHL	9	Unmodified	_YVATKVSHL_					0	0	0		ENST00000510543.1_1_4:63682712-63682895:+|nuORF	ENST00000510543.1_1_4:63682712-63682895:+|nuORF	ENST00000510543.1_1_4:63682712-63682895:+|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	509.6897888183594	2	509.290017	1016.56548	-0.33418	-0.0001702	0.12096	6.1602E-05	-0.21323	-0.00010859	509.2900677250019	56.779	0.71185	56.779	56.347	57.059	0					46	13	4	0	0	0	0.2487	1	20329	20329		34.402	0	1	47373000			64677	12899	47118	47491	63045	63045					0.05786046822890967
YVAVFVMCW	9	Unmodified	_YVAVFVMCW_					0	0	0		ENSG00000166856|ENST00000300098|GPR182	ENSG00000166856|ENST00000300098|GPR182	ENSG00000166856|ENST00000300098|GPR182	MULTI-SECPEP	A375_MHC_IP_R1	1	559.8570556640625	2	559.264099	1116.51364	-0.55966	-0.000313	-1.0812	-0.00060468	-1.6409	-0.00091768	559.2631361828251	95.66	0.35178	95.66	95.415	95.767	0					14	6	3	0	0	0	0.73662	1	35196	35196		14.582	9.351	1	841190			64678	7121	47119	47492	63046	63046					-0.03995156186852
YVCWFRPIY	9	Unmodified	_YVCWFRPIY_					0	0	0		ENSG00000198794|ENST00000425597|SCAMP5;nc|ENSG00000198794|Q8TAC9-2|SCAMP5;SCAMP5|p.S85A|1|0.24|ENSG00000198794|chr15:75016709-75016709|T/G|missense_variant;ENST00000565923.5_1_15:75287957-75310150:+|nuORF	ENSG00000198794|ENST00000425597|SCAMP5	ENSG00000198794|ENST00000425597|SCAMP5	MULTI-SECPEP	A375_MHC_IP_R2	2	624.2102661132812	2	623.807519	1245.60049	-0.83919	-0.00052349	3.8782	0.0024193	3.039	0.0018958	623.8099336516847	106.97	0.30397	107.73	107.49	107.8	0.75899					7	5	2	0	0	0	0.77244	1	40439	40439		0.6015	0	1	3342700			64679	9327	47120	47493	63047	63047					-0.012490336407836367
YVDAGTPMY	9	Oxidation (M)	_YVDAGTPM(Oxidation (M))Y_		YVDAGTPM(1)Y		YVDAGTPM(71)Y	0	0	1		ENSG00000155189|ENST00000285518|AGPAT5	ENSG00000155189|ENST00000285518|AGPAT5	ENSG00000155189|ENST00000285518|AGPAT5	MULTI-MSMS	A375_MHC_IP_R2	2	1032.3577880859375	1	1032.43427	1031.427	0.072192	7.4534E-05	-0.55522	-0.00057323	-0.48303	-0.00049869	1032.433433508495	45.878	0.50229	46.643	46.353	46.855	0.76519					16	9	2	0	0	0	0.034481	1	17211	17211		71.134	46.46	1	2920200			64680	6131	47121	47494	63048	63048		327			-0.08745864207730847
YVDAGTPMY	9	Oxidation (M)	_YVDAGTPM(Oxidation (M))Y_					0	0	1		ENSG00000155189|ENST00000285518|AGPAT5	ENSG00000155189|ENST00000285518|AGPAT5	ENSG00000155189|ENST00000285518|AGPAT5	MULTI-MATCH	A375_MHC_IP_R1	1		1	1032.43427	1031.427	0.10963	0.00011318	-0.41839	-0.00043196	-0.30876	-0.00031878	1032.433628911241	46.52	0.55477	46.52	46.195	46.749	0	-0.061197	5.7398E-05	NaN	71.134	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4486900			64681	6131	47121	47494				327			-0.08745864207730847
YVDCGRNTTY	10	Carbamidomethyl (C)	_YVDC(Carbamidomethyl (C))GRNTTY_	YVDC(1)GRNTTY		YVDC(110)GRNTTY		0	1	0		ENSG00000106460|ENST00000396668|TMEM106B	ENSG00000106460|ENST00000396668|TMEM106B	ENSG00000106460|ENST00000396668|TMEM106B	MULTI-MSMS	A375_MHC_IP_R1	1	625.1683959960938	2	624.769319	1247.52409	-0.66094	-0.00041294	-0.53577	-0.00033473	-1.1967	-0.00074767	624.768990143711	24.422	0.50409	24.422	24.245	24.749	0					16	9	2	0	0	0	0.0075204	2	6940	6940;7052		105.35	74.077	1	7576600			64682	2692	47122	47495	63049;63050	63049	17				-0.0897750199874281
YVDCGRNTTY	10	Carbamidomethyl (C)	_YVDC(Carbamidomethyl (C))GRNTTY_	YVDC(1)GRNTTY		YVDC(95)GRNTTY		0	1	0		ENSG00000106460|ENST00000396668|TMEM106B	ENSG00000106460|ENST00000396668|TMEM106B	ENSG00000106460|ENST00000396668|TMEM106B	MULTI-MSMS	A375_MHC_IP_R2	2	625.168212890625	2	624.769319	1247.52409	-1.0397	-0.00064958	-0.26864	-0.00016784	-1.3084	-0.00081742	624.7691323569292	24.101	0.71327	24.744	24.347	25.06	0.64368					23	13	2	0	0	0	0.0065506	3	7768	7768;7903;7934		94.909	63.64	1	5220300			64683	2692	47122	47495	63051;63052;63053	63051	17				-0.0897750199874281
YVDDASWMRY	10	Oxidation (M)	_YVDDASWM(Oxidation (M))RY_		YVDDASWM(1)RY		YVDDASWM(40)RY	0	0	1		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	A375_MHC_IP_R1	1	662.2041625976562	2	661.27952	1320.54449	-0.43719	-0.00028911	0.191	0.0001263	-0.2462	-0.00016281	661.2797114283954	56.852	0.91664	56.852	56.447	57.364	0					45	17	4	0	0	0	0.29801	1	20337	20337		40.239	24.991	1	7175300			64684	1649	47123	47496	63054	63054		54			-0.10296331338940945
YVDDASWMRY	10	Oxidation (M)	_YVDDASWM(Oxidation (M))RY_		YVDDASWM(1)RY		YVDDASWM(55)RY	0	0	1		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	A375_MHC_IP_R2	2	661.6781616210938	2	661.27952	1320.54449	-1.167	-0.00077173	0.48664	0.00032181	-0.68038	-0.00044992	661.2798235428999	56.35	0.81733	57.101	56.591	57.408	0.75014					43	15	4	0	0	0	0.14143	1	21184	21184		55.235	39.986	1	7709100			64685	1649	47123	47496	63055	63055		54			-0.10296331338940945
YVDDASWMRY	10	Unmodified	_YVDDASWMRY_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-SECPEP	A375_MHC_IP_R1	1	653.6812744140625	2	653.282063	1304.54957	-0.33606	-0.00021954	-0.59145	-0.00038639	-0.92751	-0.00060592	653.2817167904093	77.913	0.56235	77.913	77.639	78.201	0					31	10	4	0	0	0	0.10905	1	28402	28402		84.522	61.786	1	8389400			64686	1649	47123	47497	63056	63056					-0.09052027476309377
YVDDASWMRY	10	Unmodified	_YVDDASWMRY_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-SECPEP	A375_MHC_IP_R2	2	653.6813354492188	2	653.282063	1304.54957	-0.81395	-0.00053174	-0.24242	-0.00015837	-1.0564	-0.00069011	653.2819591745823	77.345	0.76246	78.088	77.757	78.52	0.74293					33	14	3	0	0	0	0.24526	1	29318	29318		67.081	49.968	1	9757900			64687	1649	47123	47497	63057	63057					-0.09052027476309377
YVDDFGVSV	9	Unmodified	_YVDDFGVSV_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;EXT2|p.D431Afs*5|1|0.05|ENSG00000151348|chr11:44171729-44171729|A/-|frameshift_variant;ENST00000529186.1_1_11:44129577-44137613:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-SECPEP	A375_MHC_IP_R1	1	1000.9668579101562	1	1000.4622	999.454927	0.2562	0.00025632	-0.14684	-0.00014691	0.10936	0.00010941	1000.4619860899752	96.504	0.86464	96.504	96.171	97.036	0					30	16	2	0	0	0	0.011358	1	35490	35490		120.45	76.592	1	19157000			64688	5898	47124	47498	63058	63058					-0.04482217955990109
YVDDFGVSV	9	Unmodified	_YVDDFGVSV_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;EXT2|p.D431Afs*5|1|0.05|ENSG00000151348|chr11:44171729-44171729|A/-|frameshift_variant;ENST00000529186.1_1_11:44129577-44137613:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MATCH	A375_MHC_IP_R2	2		1	1000.4622	999.454927	0.088545	8.8586E-05	-0.036006	-3.6023E-05	0.052539	5.2563E-05	1000.4621093853093	95.876	0.86385	96.627	96.246	97.109	0.75045	0.061492	6.3213E-05	NaN	120.45	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22268000			64689	5898	47124	47498							-0.04482217955990109
YVDDIFLRV	9	Unmodified	_YVDDIFLRV_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1;ENST00000494467.1_1_9:107587931-107593243:-|nuORF	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	A375_MHC_IP_R1	1	570.1433715820312	2	570.308406	1138.60226	-0.10046	-5.7292E-05	-0.39158	-0.00022332	-0.49204	-0.00028061	570.3082038778317	106.69	0.56117	106.69	106.42	106.98	0					22	10	3	0	0	0	0.44554	1	39140	39140		51.63	51.63	1	2303400			64690	6906	47125	47499	63059	63059					0.03850298648762873
YVDDIFLRV	9	Unmodified	_YVDDIFLRV_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1;ENST00000494467.1_1_9:107587931-107593243:-|nuORF	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	A375_MHC_IP_R2	2	570.7079467773438	2	570.308406	1138.60226	-0.31083	-0.00017727	-0.17819	-0.00010162	-0.48901	-0.00027889	570.308195440944	105.82	0.46037	106.58	106.32	106.78	0.75977					20	8	3	0	0	0	0.53783	1	40029	40029		43.772	18.373	1	2131600			64691	6906	47125	47499	63060	63060					0.03850298648762873
YVDDPYQKY	9	Unmodified	_YVDDPYQKY_					0	0	0		ENSG00000132313|ENST00000337109|MRPL35	ENSG00000132313|ENST00000337109|MRPL35	ENSG00000132313|ENST00000337109|MRPL35	MULTI-SECPEP	A375_MHC_IP_R1	1	596.1723022460938	2	595.771854	1189.52915	-0.46953	-0.00027973	0.69814	0.00041593	0.22861	0.0001362	595.7721873707437	38.527	0.56331	38.527	38.268	38.832	0					28	10	4	0	0	0	1.7986E-08	1	13051	13051		215.27	163	1	27219000			64692	4390	47126	47500	63061	63061					-0.05802874864480145
YVDDPYQKY	9	Unmodified	_YVDDPYQKY_					0	0	0		ENSG00000132313|ENST00000337109|MRPL35	ENSG00000132313|ENST00000337109|MRPL35	ENSG00000132313|ENST00000337109|MRPL35	MULTI-SECPEP	A375_MHC_IP_R2	2	596.1717529296875	2	595.771854	1189.52915	-0.74706	-0.00044508	0.21797	0.00012986	-0.52909	-0.00031522	595.7719387186913	37.837	0.66573	38.612	38.382	39.047	0.77451					33	12	4	0	0	0	0.006265	1	13859	13859		171.09	121.15	1	32239000			64693	4390	47126	47500	63062	63062					-0.05802874864480145
YVDEEQGLHC	10	Carbamidomethyl (C)	_YVDEEQGLHC(Carbamidomethyl (C))_	YVDEEQGLHC(1)		YVDEEQGLHC(42)		0	1	0			REV__ENSG00000155629|ENST00000339364|PIK3AP1	REV__ENSG00000155629|ENST00000339364|PIK3AP1	MULTI-MSMS	A375_MHC_IP_R2	2	625.660400390625	2	625.261327	1248.5081	-1.2285	-0.00076815	0.29961	0.00018733	-0.92891	-0.00058081	625.2615591394136	25.359	0.45821	26.002	25.822	26.28	0.64368					14	8	2	0	0	0	0.27246	1	8469	8469		41.84	20.093	1	6697400	+		64694	19930	47127	47501	63063	63063	77				-0.1062120823562509
YVDEEQGLHC	10	Carbamidomethyl (C)	_YVDEEQGLHC(Carbamidomethyl (C))_					0	1	0			REV__ENSG00000155629|ENST00000339364|PIK3AP1	REV__ENSG00000155629|ENST00000339364|PIK3AP1	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	625.261327	1248.5081	-0.76659	-0.00047932	0.12195	7.6254E-05	-0.64464	-0.00040307	625.261360082396	25.841	0.40404	25.841	25.714	26.118	0	-0.080773	-8.6222E-05	NaN	41.84	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6309600	+		64695	19930	47127	47501			77				-0.1062120823562509
YVDEEQGLHC	10	Carbamidomethyl (C)	_YVDEEQGLHC(Carbamidomethyl (C))_					0	1	0			REV__ENSG00000155629|ENST00000339364|PIK3AP1	REV__ENSG00000155629|ENST00000339364|PIK3AP1	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	625.261327	1248.5081	-1.2285	-0.00076815	0.29961	0.00018733	-0.92891	-0.00058081	625.2615591394136	25.359	0.45821	26.002	25.822	26.28	0.64368	0.080773	0.00013594	NaN	41.84	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6697400	+		64696	19930	47127	47501			77				-0.1062120823562509
YVDEFRGSFS	10	Unmodified	_YVDEFRGSFS_					0	0	0			REV__nc|ENSG00000099875|Q9HBH9-2|MKNK2	REV__nc|ENSG00000099875|Q9HBH9-2|MKNK2	MULTI-MSMS	A375_MHC_IP_R1	1	604.174560546875	2	603.774928	1205.5353	-0.53708	-0.00032427	-0.051704	-3.1218E-05	-0.58878	-0.00035549	603.774841654047	52.962	0.65805	52.962	52.694	53.352	0					28	12	3	0	0	0	0.39599	1	18838	18838		34.402	3.1334	1	7186200	+		64697	17032	47128	47502	63064	63064					-0.05924356632931449
YVDEQIKYF	9	Unmodified	_YVDEQIKYF_					0	0	0			REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	MSMS	A375_MHC_IP_R1	1	602.5726318359375	2	602.797872	1203.58119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.06	1	108.06	107.56	108.56	0								0	0	0	0.15486	1	39643	39643		13.508	0	1		+		64698	17596	47129	47503	63065	63065					-0.012457114507242295
YVDERQDSAD	10	Unmodified	_YVDERQDSAD_					0	0	0			REV__nc|ENSG00000241697|Q8IYR6-2|TMEFF1	REV__nc|ENSG00000241697|Q8IYR6-2|TMEFF1	MULTI-MSMS	A375_MHC_IP_R1	1	599.7163696289062	2	599.254557	1196.49456	-0.34592	-0.00020729	2.0475	0.001227	1.7016	0.0010197	599.255777529489	57.237	0.40769	57.237	57.007	57.415	0					10	7	2	0	0	0	0.66308	1	20521	20521		16.149	1.3108	1	1594900	+		64699	22790	47130	47504	63066	63066					-0.0958274274323685
YVDHDKDLT	9	Unmodified	_YVDHDKDLT_					0	0	0			REV__ANGPTL2|p.R421K|1|0.24|ENSG00000136859|chr9:127091690-127091690|C/T|missense_variant	REV__ANGPTL2|p.R421K|1|0.24|ENSG00000136859|chr9:127091690-127091690|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	553.6610107421875	2	553.261653	1104.50875	-1.1249	-0.00062236	0.29595	0.00016374	-0.82893	-0.00045862	553.2615998898829	24.463	0.96603	25.107	24.907	25.873	0.64368					54	18	4	0	0	0	0.34064	1	8028	8028		27.629	2.6378	1	96409000	+		64700	15396	47131	47505	63067	63067					-0.039320455242886965
YVDHDKDLT	9	Unmodified	_YVDHDKDLT_					0	0	0			REV__ANGPTL2|p.R421K|1|0.24|ENSG00000136859|chr9:127091690-127091690|C/T|missense_variant	REV__ANGPTL2|p.R421K|1|0.24|ENSG00000136859|chr9:127091690-127091690|C/T|missense_variant	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	553.261653	1104.50875	-0.54189	-0.00029981	0.055795	3.0869E-05	-0.4861	-0.00026894	553.2614879887537	24.977	0.70964	24.977	24.852	25.562	0	-0.064696	-0.00013426	NaN	27.629	42	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175200000	+		64701	15396	47131	47505							-0.039320455242886965
YVDLLRVRLQY	11	Unmodified	_YVDLLRVRLQY_					0	0	0			REV__ENST00000599418.1_1_19:39433250-39435758:-|nuORF	REV__ENST00000599418.1_1_19:39433250-39435758:-|nuORF	MSMS	A375_MHC_IP_R2	2	719.415771484375	2	719.414269	1436.81398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.416	1	68.152	67.652	68.652	0.73631								0	0	0	0.16258	1	25541	25541		5.2969	2.0156	1		+		64702	22937	47132	47506	63068	63068					0.11304970339756437
YVDPEREIY	9	Unmodified	_YVDPEREIY_					0	0	0		ENSG00000158122|ENST00000375234|PRXL2C	ENSG00000158122|ENST00000375234|PRXL2C	ENSG00000158122|ENST00000375234|PRXL2C	MULTI-MSMS	A375_MHC_IP_R1	1	592.6858520507812	2	592.285128	1182.5557	-0.30023	-0.00017782	1.0104	0.00059846	0.71021	0.00042064	592.2856176363917	52.217	0.50803	52.217	51.93	52.438	0					23	9	3	0	0	0	0.10637	1	18527	18527		49.527	31.381	1	5687400			64703	6288	47133	47507	63069	63069					-0.028271859731376026
YVDPEREIY	9	Unmodified	_YVDPEREIY_					0	0	0		ENSG00000158122|ENST00000375234|PRXL2C	ENSG00000158122|ENST00000375234|PRXL2C	ENSG00000158122|ENST00000375234|PRXL2C	MULTI-SECPEP	A375_MHC_IP_R2	2	592.6844482421875	2	592.285128	1182.5557	-0.80063	-0.0004742	-0.14447	-8.5569E-05	-0.94511	-0.00055977	592.2849056780464	51.543	0.61024	52.296	52.118	52.729	0.75225					20	11	3	0	0	0	0.27114	1	19407	19407		53.404	53.404	1	6311200			64704	6288	47133	47507	63070	63070					-0.028271859731376026
YVDPQFLTY	9	Unmodified	_YVDPQFLTY_					0	0	0		nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1	nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	A375_MHC_IP_R1	1	573.6790161132812	2	573.279315	1144.54408	0.0090579	5.1927E-06	-0.057438	-3.2928E-05	-0.04838	-2.7735E-05	573.2793009262548	107.72	4.328	107.72	106.98	111.31	0					250	84	6	0	0	0	0.04447	4	40202	39404;39797;39982;40202		66.457	36.305	1	638910000			64705	9384	47134	47508	63071;63072;63073;63074	63074					-0.022413829964762044
YVDPQFLTY	9	Unmodified	_YVDPQFLTY_					0	0	0		nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1	nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	A375_MHC_IP_R1	1	1145.490234375	1	1145.55135	1144.54408	0.27872	0.00031928	0.058799	6.7357E-05	0.33752	0.00038664	1145.551312932794	107.67	4.1741	107.67	107.19	111.36	0					210	81	6	0	0	0	0.0096822	2	39966	39966;40496		110.55	77.767	1	672520000			64706	9384	47134	47508	63075;63076	63075					-0.022413829964762044
YVDPQFLTY	9	Unmodified	_YVDPQFLTY_					0	0	0		nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1	nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	A375_MHC_IP_R2	2	573.6793823242188	2	573.279315	1144.54408	-0.3113	-0.00017846	-0.41066	-0.00023543	-0.72196	-0.00041389	573.2790693125482	106.96	4.7367	107.72	107.09	111.82	0.75977					274	92	6	0	0	0	0.0090297	4	40313	40280;40313;40510;40864		114.2	60.369	1	662370000			64707	9384	47134	47508	63077;63078;63079;63080	63078					-0.022413829964762044
YVDPQFLTY	9	Unmodified	_YVDPQFLTY_					0	0	0		nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1	nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	A375_MHC_IP_R2	2	1146.37109375	1	1145.55135	1144.54408	0.069322	7.9412E-05	-0.36962	-0.00042342	-0.3003	-0.00034401	1145.5508111485897	106.96	4.0245	107.72	107.24	111.27	0.75977					191	78	6	0	0	0	0.0090499	1	40578	40578		100.09	60.141	1	684750000			64708	9384	47134	47508	63081	63081					-0.022413829964762044
YVDPVITSI	9	Unmodified	_YVDPVITSI_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET;nc|ENSG00000105976|P08581-3|MET;MET|p.S653F|1|0.47|ENSG00000105976|chr7:116757532-116757532|C/T|missense_variant	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-SECPEP	A375_MHC_IP_R1	1	504.18902587890625	2	503.776408	1005.53826	-0.32773	-0.0001651	0.54908	0.00027662	0.22135	0.00011151	503.7766185954172	102.68	1.1656	102.68	102.25	103.42	0					52	22	4	0	0	0	0.047455	1	37724	37724		78.149	44.047	1	19768000			64709	2654	47135	47509	63082	63082					0.03571518491855841
YVDPVITSI	9	Unmodified	_YVDPVITSI_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET;nc|ENSG00000105976|P08581-3|MET;MET|p.S653F|1|0.47|ENSG00000105976|chr7:116757532-116757532|C/T|missense_variant	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-SECPEP	A375_MHC_IP_R2	2	504.17596435546875	2	503.776408	1005.53826	-0.6167	-0.00031068	0.45818	0.00023082	-0.15852	-7.9861E-05	503.77656351302124	101.78	1.0688	102.54	102.26	103.33	0.76428					61	20	4	0	0	0	0.096726	1	38746	38746		52.268	26.869	1	23524000			64710	2654	47135	47509	63083	63083					0.03571518491855841
YVDPVMVSI	9	Unmodified	_YVDPVMVSI_					0	0	0			REV__ENSG00000134243|ENST00000256637|SORT1	REV__ENSG00000134243|ENST00000256637|SORT1	MSMS	A375_MHC_IP_R1	1	511.7054748535156	2	511.764986	1021.51542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.463	1	90.463	89.963	90.963	0								0	0	0	0.1521	1	33245	33245		18.135	2.2878	1		+		64711	18760	47136	47510	63084	63084					0.0055217610274667095
YVDQQFEQY	9	Unmodified	_YVDQQFEQY_					0	0	0		nc|ENSG00000284874|Q99719-2|SEPTIN5;ENSG00000184702|ENST00000455784|SEPTIN5	nc|ENSG00000284874|Q99719-2|SEPTIN5	nc|ENSG00000284874|Q99719-2|SEPTIN5	MULTI-MSMS	A375_MHC_IP_R1	1	610.666259765625	2	610.266936	1218.51932	-0.21345	-0.00013026	-0.21788	-0.00013297	-0.43133	-0.00026323	610.2667948696886	62.609	0.56292	62.609	62.3	62.863	0					24	10	3	0	0	0	0.0098183	1	22584	22584		114.65	64.716	1	3422200			64712	8604	47137	47511	63085	63085					-0.08120062869852518
YVDQQFEQY	9	Unmodified	_YVDQQFEQY_					0	0	0		nc|ENSG00000284874|Q99719-2|SEPTIN5;ENSG00000184702|ENST00000455784|SEPTIN5	nc|ENSG00000284874|Q99719-2|SEPTIN5	nc|ENSG00000284874|Q99719-2|SEPTIN5	MULTI-MSMS	A375_MHC_IP_R2	2	610.6664428710938	2	610.266936	1218.51932	-0.69016	-0.00042118	-0.20987	-0.00012808	-0.90003	-0.00054926	610.2667867543587	62.112	0.65942	62.854	62.521	63.18	0.74263					25	12	3	0	0	0	0.0092471	1	23527	23527		103.35	68.952	1	3075400			64713	8604	47137	47511	63086	63086					-0.08120062869852518
YVDVLSDDEE	10	Unmodified	_YVDVLSDDEE_					0	0	0			REV__ENSG00000148843|ENST00000369797|PDCD11	REV__ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	A375_MHC_IP_R1	1	592.65234375	2	592.253691	1182.49283	-0.10522	-6.2317E-05	-1.2288	-0.00072777	-1.334	-0.00079008	592.2530252288137	107.62	1.2225	107.62	107.29	108.51	0					57	23	4	0	0	0	0.53946	1	39456	39456		25.399	4.9457	1	21118000	+		64714	19651	47138	47512	63087	63087					-0.09111796551815132
YVDYPNDVKF	10	Unmodified	_YVDYPNDVKF_					0	0	0		ENST00000498707.5_1_3:64502565-64502754:-|nuORF	ENST00000498707.5_1_3:64502565-64502754:-|nuORF	ENST00000498707.5_1_3:64502565-64502754:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	630.69970703125	2	630.300778	1258.587	-0.57383	-0.00036169	-0.14169	-8.931E-05	-0.71552	-0.00045099	630.3005283869678	77.768	0.51133	77.768	77.537	78.048	0					22	9	3	0	0	0	0.77204	1	28379	28379		27.629	2.6378	1	5666000			64715	12765	47139	47513	63088	63088					-0.03194612939068975
YVDYPNDVKF	10	Unmodified	_YVDYPNDVKF_					0	0	0		ENST00000498707.5_1_3:64502565-64502754:-|nuORF	ENST00000498707.5_1_3:64502565-64502754:-|nuORF	ENST00000498707.5_1_3:64502565-64502754:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	630.699951171875	2	630.300778	1258.587	-0.8143	-0.00051325	-0.12807	-8.0723E-05	-0.94237	-0.00059398	630.3005892039876	77.099	0.50634	77.842	77.504	78.01	0.74293					22	9	3	0	0	0	0.59108	2	29245	29245;29339		21.537	5.3879	1	4140600			64716	12765	47139	47513	63089;63090	63089					-0.03194612939068975
YVEDGKGIRRV	11	Unmodified	_YVEDGKGIRRV_					0	0	0		nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;ENSG00000126391|ENST00000317568|FRMD8;ENST00000440433.1_1_X:64770780-64771062:-|nuORF	nc|ENSG00000126391|Q9BZ67-2|FRMD8	nc|ENSG00000126391|Q9BZ67-2|FRMD8	MULTI-MSMS	A375_MHC_IP_R1	1	431.6421203613281	3	431.242088	1290.70443	-0.22772	-9.8202E-05	0.26468	0.00011414	0.036964	1.594E-05	431.2421657196553	19.736	0.50879	19.736	19.42	19.928	0					18	9	3	0	0	0	0.72713	1	4981	4981		11.631	0.73241	1	3325000			64717	4040	47140	47514	63091	63091					0.0707096472037847
YVEDPQGNTIY	11	Unmodified	_YVEDPQGNTIY_					0	0	0		ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-MSMS	A375_MHC_IP_R1	1	650.1982421875	2	649.7986	1297.58265	-0.37334	-0.00024259	-0.08159	-5.3017E-05	-0.45493	-0.00029561	649.798403747646	60.802	0.61008	60.802	60.566	61.176	0					23	11	3	0	0	0	0.036274	1	21896	21896		81.915	59.257	1	3046200			64718	7089	47141	47515	63092	63092					-0.05424122152612654
YVEDPQGNTIY	11	Unmodified	_YVEDPQGNTIY_					0	0	0		ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-MSMS	A375_MHC_IP_R2	2	650.1983642578125	2	649.7986	1297.58265	-1.0323	-0.00067079	0.19479	0.00012657	-0.83751	-0.00054421	649.7986925884944	60.243	0.91724	60.988	60.751	61.668	0.74503					29	17	3	0	0	0	0.13939	2	22805	22805;22846		63.227	39.207	1	4171300			64719	7089	47141	47515	63093;63094	63093					-0.05424122152612654
YVEGVHQQY	9	Unmodified	_YVEGVHQQY_					0	0	0		ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	MULTI-MSMS	A375_MHC_IP_R1	1	561.6879272460938	2	561.764363	1121.51417	-0.57396	-0.00032243	0.086936	4.8837E-05	-0.48702	-0.00027359	561.764310848306	27.208	0.60617	27.208	26.978	27.584	0					32	11	4	0	0	0	0.17328	1	8383	8383		39.957	13.074	1	44115000			64720	1333	47142	47516	63095	63095					-0.04172321941814516
YVEGVHQQY	9	Unmodified	_YVEGVHQQY_					0	0	0		ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	MULTI-SECPEP	A375_MHC_IP_R1	1	1123.2188720703125	1	1122.52145	1121.51417	-0.051042	-5.7296E-05	-0.57418	-0.00064453	-0.62523	-0.00070183	1122.52087492449	27.22	0.35399	27.22	27.078	27.432	0					11	6	2	0	0	0	0.046478	1	8191	8191		82.529	57.13	1	2346500			64721	1333	47142	47516	63096	63096					-0.04172321941814516
YVEGVHQQY	9	Unmodified	_YVEGVHQQY_					0	0	0		ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	MULTI-SECPEP	A375_MHC_IP_R2	2	562.1640625	2	561.764363	1121.51417	-0.91757	-0.00051546	0.073317	4.1187E-05	-0.84425	-0.00047427	561.7643490952593	26.678	0.86857	27.338	27.058	27.927	0.65992					41	16	4	0	0	0	0.03109	1	9020	9020		103.35	53.421	1	41295000			64722	1333	47142	47516	63097	63097					-0.04172321941814516
YVEGVHQQY	9	Unmodified	_YVEGVHQQY_					0	0	0		ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	MULTI-MATCH	A375_MHC_IP_R2	2		1	1122.52145	1121.51417	-0.23177	-0.00026016	-0.76321	-0.00085672	-0.99498	-0.0011169	1122.5207364016849	26.678	0.30489	27.338	27.161	27.466	0.65992	0.058977	-4.1888E-05	NaN	82.529	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2712100			64723	1333	47142	47516							-0.04172321941814516
YVEKFALNY	9	Unmodified	_YVEKFALNY_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	A375_MHC_IP_R1	1	574.195068359375	2	573.795132	1145.57571	-0.1759	-0.00010093	0.0055058	3.1592E-06	-0.17039	-9.7771E-05	573.7951206710175	70.658	0.45915	70.658	70.442	70.902	0					20	8	3	0	0	0	0.23894	1	25669	25669		47.594	7.6371	1	2749800			64724	3986	47143	47517	63098	63098					0.008746097574658052
YVEKFALNY	9	Unmodified	_YVEKFALNY_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-MSMS	A375_MHC_IP_R2	2	574.1948852539062	2	573.795132	1145.57571	-0.16232	-9.3137E-05	-0.0085364	-4.8981E-06	-0.17085	-9.8035E-05	573.7950615005107	70.033	0.55998	70.767	70.335	70.895	0.73421					20	10	3	0	0	0	0.032333	1	26577	26577		72.968	33.011	1	3303600			64725	3986	47143	47517	63099	63099					0.008746097574658052
YVEKVANGQY	10	Unmodified	_YVEKVANGQY_					0	0	0		ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	MULTI-MSMS	A375_MHC_IP_R1	1	586.1929931640625	2	585.793121	1169.57169	-0.25206	-0.00014765	-0.0074865	-4.3855E-06	-0.25954	-0.00015204	585.7930115277743	28.682	1.0133	28.682	28.39	29.403	0					22	13	2	0	0	0	0.011525	1	8852	8852		117.76	59.082	1	3757300			64726	1718	47144	47518	63100	63100					-0.00631479736239271
YVEKVANGQY	10	Unmodified	_YVEKVANGQY_					0	0	0		ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	MULTI-SECPEP	A375_MHC_IP_R2	2	586.1927490234375	2	585.793121	1169.57169	-0.65738	-0.00038509	0.29442	0.00017247	-0.36297	-0.00021262	585.7932581595396	28.059	0.60849	28.738	28.452	29.06	0.67857					22	10	3	0	0	0	0.051307	1	9634	9634		117.84	71.817	1	3939500			64727	1718	47144	47518	63101	63101					-0.00631479736239271
YVESCDEDTE	10	Unmodified	_YVESCDEDTE_					0	0	0		ENSG00000187068|ENST00000335012|C3orf70	ENSG00000187068|ENST00000335012|C3orf70	ENSG00000187068|ENST00000335012|C3orf70	MULTI-SECPEP	A375_MHC_IP_R1	1	595.1123046875	2	595.213708	1188.41286	-0.45779	-0.00027248	-0.088849	-5.2884E-05	-0.54664	-0.00032537	595.2142794857295	77.101	0.56163	77.101	76.622	77.184	0					13	10	2	0	0	0	0.93799	1	28137	28137		3.5965	2.267	1	1496000			64728	8803	47145	47519	63102	63102					-0.17380606217375316
YVETCGHLIY	10	Unmodified	_YVETCGHLIY_					0	0	0		ENSG00000135392|ENST00000678005|DNAJC14	ENSG00000135392|ENST00000678005|DNAJC14	ENSG00000135392|ENST00000678005|DNAJC14	MULTI-MSMS	A375_MHC_IP_R1	1	599.6810302734375	2	599.284074	1196.5536	-0.36324	-0.00021769	-3.9112	-0.0023439	-4.2745	-0.0025616	599.7836998844689	77.642	0.55867	77.642	77.336	77.895	0					15	10	2	0	0	0	0.40101	1	28325	28325		34.102	7.2188	1	2574200			64729	4679	47146	47520	63103	63103					-0.036819379825828946
YVFFSLYV	8	Unmodified	_YVFFSLYV_					0	0	0			REV__tr|U7SNA2|U7SNA2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01871PE=4SV=1	REV__tr|U7SNA2|U7SNA2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01871PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	519.6705322265625	2	519.270761	1036.52697	-0.54766	-0.00028439	-0.5169	-0.00026841	-1.0646	-0.0005528	519.270500571677	75.767	1.4105	75.767	75.262	76.673	0					68	27	4	0	0	0	0.48416	1	27538	27538		49.669	5.8106	1	15352000	+		64730	28318	47147	47521	63104	63104					0.010167411883685418
YVFKRFRLRSF	11	Unmodified	_YVFKRFRLRSF_					0	0	0			REV__ZSCAN18|p.E54K|1|0.33|ENSG00000121413|chr19:58090108-58090108|C/T|missense_variant	REV__ZSCAN18|p.E54K|1|0.33|ENSG00000121413|chr19:58090108-58090108|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	759.8381958007812	2	759.938245	1517.86194	-0.84417	-0.00064151	-0.46778	-0.00035548	-1.3119	-0.00099699	759.9388642904357	140.1	0.66528	140.1	139.78	140.44	0					47	11	5	0	0	0	0.73906	1	53918	53918		0.26902	0	1	98995000	+		64731	29060	47148	47522	63105	63105					0.12372089050450086
YVFPGVTRL	9	Unmodified	_YVFPGVTRL_					0	0	0		nc|ENSG00000160284|Q9H0A9-2|SPATC1L;ENSG00000160284|ENST00000291672|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	MULTI-SECPEP	A375_MHC_IP_R2	2	526.7006225585938	2	526.300384	1050.58622	-0.33646	-0.00017708	-0.089172	-4.6931E-05	-0.42563	-0.00022401	526.300223434696	86.945	0.50729	87.678	87.407	87.914	0.733					21	9	3	0	0	0	0.37663	1	33033	33033		43.772	25.637	1	5749200			64732	6411	47149	47523	63106	63106					0.06294637202563536
YVGEYVEGF	9	Unmodified	_YVGEYVEGF_					0	0	0			REV__nc|ENSG00000120899|Q14289-2|PTK2B	REV__nc|ENSG00000120899|Q14289-2|PTK2B	MSMS	A375_MHC_IP_R2	2	531.6898803710938	2	531.742565	1061.47058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.094	1	31.813	31.313	32.313	0.71857								0	0	0	0.15131	1	10977	10977		19.439	1.304	1		+		64733	18139	47150	47524	63107	63107					-0.05769931438931053
YVGPAKVI	8	Unmodified	_YVGPAKVI_					0	0	0		ENSG00000109320|ENST00000226574|NFKB1;nc|ENSG00000109320|P19838|NFKB1	ENSG00000109320|ENST00000226574|NFKB1	ENSG00000109320|ENST00000226574|NFKB1	MULTI-SECPEP	A375_MHC_IP_R2	2	423.2521057128906	2	423.757821	845.501089	-0.098222	-4.1623E-05	-0.33129	-0.00014039	-0.42952	-0.00018201	423.75770513606244	44.346	0.45636	45.115	44.833	45.289	0.76909					13	8	2	0	0	0	0.94479	1	16502	16502		13.508	4.1604	1	1553500			64734	2863	47151	47525	63108	63108					0.07215891736746016
YVGPERSV	8	Unmodified	_YVGPERSV_					0	0	0		ENSG00000197724|ENST00000359246|PHF2	ENSG00000197724|ENST00000359246|PHF2	ENSG00000197724|ENST00000359246|PHF2	MULTI-MSMS	A375_MHC_IP_R1	1	454.1376037597656	2	453.737617	905.460681	-0.47628	-0.0002161	0.2812	0.00012759	-0.19508	-8.8514E-05	453.7376863749667	25.93	0.45602	25.93	25.765	26.221	0					13	8	2	0	0	0	0.47739	1	7685	7685		49.933	11.782	1	3934100			64735	9188	47152	47526	63109	63109					0.004169253463260247
YVGPERSV	8	Unmodified	_YVGPERSV_					0	0	0		ENSG00000197724|ENST00000359246|PHF2	ENSG00000197724|ENST00000359246|PHF2	ENSG00000197724|ENST00000359246|PHF2	MULTI-MSMS	A375_MHC_IP_R2	2	454.1372985839844	2	453.737617	905.460681	-0.67554	-0.00030652	0.0804	3.6481E-05	-0.59514	-0.00027004	453.73765640992633	25.359	0.50889	26.002	25.822	26.33	0.64368					14	9	3	0	0	0	0.67331	1	8494	8494		41.84	3.6884	1	4163200			64736	9188	47152	47526	63110	63110					0.004169253463260247
YVGPTRQQF	9	Unmodified	_YVGPTRQQF_					0	0	0		ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81	ENSG00000167716|ENST00000409644|WDR81	ENSG00000167716|ENST00000409644|WDR81	MULTI-SECPEP	A375_MHC_IP_R1	1	548.6815185546875	2	548.282723	1094.55089	-0.35776	-0.00019615	-1.9188	-0.001052	-2.2765	-0.0012482	548.2812807191752	35.51	0.66344	35.51	35.218	35.881	0					20	12	3	0	0	0	0.4465	1	11841	11841		38.176	11.292	1	4963700			64737	7216	47153	47527	63111	63111					0.00739974674752375
YVGQLAGQVI	10	Unmodified	_YVGQLAGQVI_					0	0	0		ENSG00000101577|ENST00000677752|LPIN2;LPIN2|p.F269Rfs*12|1|0.8|ENSG00000101577|chr18:2939493-2939497|GGGAA/-|frameshift_variant	ENSG00000101577|ENST00000677752|LPIN2	ENSG00000101577|ENST00000677752|LPIN2	MULTI-SECPEP	A375_MHC_IP_R1	1	524.6952514648438	2	524.295299	1046.57605	-0.49699	-0.00026057	-0.61116	-0.00032043	-1.1082	-0.000581	524.2949554820659	68.708	0.75994	68.708	68.26	69.02	0					19	14	2	0	0	0	0.72086	1	24944	24944		30.637	10.222	1	1655300			64738	2310	47154	47528	63112	63112					0.054620294773030764
YVGRKPKVEQ	10	Unmodified	_YVGRKPKVEQ_					0	0	0		ENSG00000105329|ENST00000221930|TGFB1	ENSG00000105329|ENST00000221930|TGFB1	ENSG00000105329|ENST00000221930|TGFB1	MSMS	A375_MHC_IP_R2	2	401.93145751953125	3	401.899662	1202.67716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.59	1	28.269	27.769	28.769	0.67857								0	0	0	0.15425	1	9446	9446		7.0371	0.41363	1				64739	2591	47155	47529	63113	63113					0.08392481180044342
YVHANQTGYLD	11	Unmodified	_YVHANQTGYLD_					0	0	0		ACAN|p.P338L|1|0.28|ENSG00000157766|chr15:88843610-88843610|C/T|missense_variant	ACAN|p.P338L|1|0.28|ENSG00000157766|chr15:88843610-88843610|C/T|missense_variant	ACAN|p.P338L|1|0.28|ENSG00000157766|chr15:88843610-88843610|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	427.9989318847656	3	427.535048	1279.58332	-0.4574	-0.00019555	1.0528	0.00045011	0.59541	0.00025456	427.5352759141602	67.398	0.35765	67.398	67.194	67.552	0					9	6	2	0	0	0	0.99738	1	24436	24436		1.1098	0.41209	1	679830			64740	28	47156	47530	63114	63114					-0.04529282712906024
YVIDPIKGLKL	11	Unmodified	_YVIDPIKGLKL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R1	1	420.6641540527344	3	420.26383	1257.76966	0.1185	4.9799E-05	0.51163	0.00021502	0.63013	0.00026482	420.2639653346693	93.668	0.61012	93.668	93.381	93.991	0					31	11	4	0	0	0	0.43802	1	34416	34416		35.996	26.752	1	4168400			64741	14788	47157	47531	63115	63115					0.1510856619356673
YVIDPIKGLKL	11	Unmodified	_YVIDPIKGLKL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	A375_MHC_IP_R2	2	420.6636657714844	3	420.26383	1257.76966	-0.018573	-7.8055E-06	0.23981	0.00010078	0.22124	9.2978E-05	420.2638295549027	92.84	0.60809	93.579	93.291	93.899	0.73902					25	11	3	0	0	0	0.43802	1	35284	35284		35.996	28.567	1	5431600			64742	14788	47157	47531	63116	63116					0.1510856619356673
YVIELQHVV	9	Unmodified	_YVIELQHVV_					0	0	0		nc|ENSG00000172053|P47897-2|QARS1;ENSG00000172053|ENST00000306125|QARS1;ENST00000494984.5_1_3:49135981-49136101:-|nuORF;ENST00000470113.2_1_3:49135784-49136686:-|nuORF	nc|ENSG00000172053|P47897-2|QARS1	nc|ENSG00000172053|P47897-2|QARS1	MULTI-SECPEP	A375_MHC_IP_R1	1	550.7105102539062	2	550.310949	1098.60735	-0.49192	-0.00027071	-0.097123	-5.3448E-05	-0.58905	-0.00032416	550.3104707670527	83.034	0.40285	83.034	82.823	83.226	0					12	7	2	0	0	0	0.67471	1	30412	30412		24.021	10.513	1	1250500			64743	7675	47158	47532	63117	63117					0.06198602511426543
YVIELQHVV	9	Unmodified	_YVIELQHVV_					0	0	0		nc|ENSG00000172053|P47897-2|QARS1;ENSG00000172053|ENST00000306125|QARS1;ENST00000494984.5_1_3:49135981-49136101:-|nuORF;ENST00000470113.2_1_3:49135784-49136686:-|nuORF	nc|ENSG00000172053|P47897-2|QARS1	nc|ENSG00000172053|P47897-2|QARS1	MULTI-MATCH	A375_MHC_IP_R2	2		2	550.310949	1098.60735	-0.82111	-0.00045186	0.60686	0.00033396	-0.21425	-0.0001179	550.3110816914445	82.153	0.51031	82.896	82.684	83.195	0.74293	-0.068811	0.00043973	NaN	24.021	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1051500			64744	7675	47158	47532							0.06198602511426543
YVINDLTAV	9	Unmodified	_YVINDLTAV_					0	0	0		ENSG00000102172|ENST00000404933|SMS;nc|ENSG00000102172|P52788-2|SMS	ENSG00000102172|ENST00000404933|SMS	ENSG00000102172|ENST00000404933|SMS	MULTI-MSMS	A375_MHC_IP_R1	1	504.67388916015625	2	504.274032	1006.53351	-0.36088	-0.00018198	-0.045054	-2.272E-05	-0.40594	-0.0002047	504.27389864097614	100.16	0.76063	100.16	99.925	100.69	0					25	14	3	0	0	0	0.030038	1	36793	36793		74.929	22.661	1	5156100			64745	2361	47159	47533	63118	63118					0.030506343490856125
YVINDLTAV	9	Unmodified	_YVINDLTAV_					0	0	0		ENSG00000102172|ENST00000404933|SMS;nc|ENSG00000102172|P52788-2|SMS	ENSG00000102172|ENST00000404933|SMS	ENSG00000102172|ENST00000404933|SMS	MULTI-MSMS	A375_MHC_IP_R2	2	504.6738586425781	2	504.274032	1006.53351	-0.45936	-0.00023164	-0.083307	-4.201E-05	-0.54266	-0.00027365	504.2739058785384	99.386	0.71336	100.15	99.909	100.62	0.75977					32	13	3	0	0	0	0.018546	1	37699	37699		85.272	33.004	1	7571800			64746	2361	47159	47533	63119	63119					0.030506343490856125
YVIYRIRVH	9	Unmodified	_YVIYRIRVH_					0	0	0		ENST00000560630.2_1_15:49470652-49470838:-|nuORF	ENST00000560630.2_1_15:49470652-49470838:-|nuORF	ENST00000560630.2_1_15:49470652-49470838:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	407.3116455078125	3	406.90838	1217.70331	0.036758	1.4957E-05	0.13358	5.4356E-05	0.17034	6.9314E-05	406.9080379656655	44.465	0.56466	44.465	44.061	44.626	0					20	10	3	0	0	0	0.44024	1	15431	15431		22.736	9.2014	1	3363800			64747	13498	47160	47534	63120	63120					0.10316795142171031
YVIYRIRVH	9	Unmodified	_YVIYRIRVH_					0	0	0		ENST00000560630.2_1_15:49470652-49470838:-|nuORF	ENST00000560630.2_1_15:49470652-49470838:-|nuORF	ENST00000560630.2_1_15:49470652-49470838:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	407.31146240234375	3	406.90838	1217.70331	0.19161	7.7968E-05	-0.28118	-0.00011441	-0.089564	-3.6444E-05	406.907807854582	43.635	0.70804	44.404	43.923	44.631	0.7691					19	13	2	0	0	0	0.44024	1	16190	16190		22.736	5.6234	1	4511800			64748	13498	47160	47534	63121	63121					0.10316795142171031
YVIYSSTLY	9	Unmodified	_YVIYSSTLY_					0	0	0		ENSG00000114279|ENST00000445105|FGF12;nc|ENSG00000114279|P61328|FGF12	ENSG00000114279|ENST00000445105|FGF12	ENSG00000114279|ENST00000445105|FGF12	MULTI-SECPEP	A375_MHC_IP_R2	2	555.17919921875	2	554.78169	1107.54883	-1.1055	-0.00061331	-3.8708	-0.0021474	-4.9763	-0.0027607	554.7801039777098	20.747	0.55747	21.358	21.059	21.616	0.6103					14	10	2	0	0	0	0.75466	1	6470	6470		7.9102	0	1	1153500			64749	3208	47161	47535	63122	63122					-0.0006449885370329866
YVKKITVLVK	10	Unmodified	_YVKKITVLVK_					0	0	0			REV__ENSG00000234284|ENST00000444149|ZNF879	REV__ENSG00000234284|ENST00000444149|ZNF879	MULTI-SECPEP	A375_MHC_IP_R2	2	596.2364501953125	2	595.897192	1189.77983	-0.494	-0.00029437	-3.4513	-0.0020566	-3.9453	-0.002351	596.3954580745614	84.012	0.25777	84.751	84.559	84.817	0.73962					5	4	2	0	0	0	0.94819	1	31939	31939		1.8442	1.4435	1	766050	+		64750	22750	47162	47536	63123	63123					0.19253173918764332
YVKRLDLR	8	Unmodified	_YVKRLDLR_					0	0	0		nc|ENSG00000187905|Q6ZQY2-2|LRRC74B;ENSG00000187905|ENST00000442047|LRRC74B	nc|ENSG00000187905|Q6ZQY2-2|LRRC74B	nc|ENSG00000187905|Q6ZQY2-2|LRRC74B	MULTI-MSMS	A375_MHC_IP_R1	1	354.93084716796875	3	354.885464	1061.63456	-0.0094577	-3.3564E-06	-0.0017519	-6.2174E-07	-0.01121	-3.9781E-06	354.88544059346606	50.773	0.86264	50.773	50.459	51.322	0					43	16	4	0	0	0	0.77778	1	17882	17882		2.9952	0	1	32355000			64751	8866	47163	47537	63124	63124					0.10621130842446291
YVKRLDLR	8	Unmodified	_YVKRLDLR_					0	0	0		nc|ENSG00000187905|Q6ZQY2-2|LRRC74B;ENSG00000187905|ENST00000442047|LRRC74B	nc|ENSG00000187905|Q6ZQY2-2|LRRC74B	nc|ENSG00000187905|Q6ZQY2-2|LRRC74B	MULTI-MSMS	A375_MHC_IP_R1	1	532.0375366210938	2	531.824558	1061.63456	-0.59619	-0.00031707	0.059791	3.1799E-05	-0.5364	-0.00028527	531.8245343344129	50.739	0.5579	50.739	50.51	51.068	0					27	10	3	0	0	0	0.77602	1	17938	17938		12.532	1.7076	1	20799000			64752	8866	47163	47537	63125	63125					0.10621130842446291
YVLEGLKSV	9	Unmodified	_YVLEGLKSV_					0	0	0		ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1;nc|ENSG00000107938|Q3B7T1-3|EDRF1;ENST00000481600.5_1_10:127417653-127452038:+|nuORF	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	ENST00000525091.5_1_10:127408310-127436620:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	504.6798400878906	2	504.292225	1006.5699	-0.57124	-0.00028807	-0.62089	-0.00031311	-1.1921	-0.00060118	504.292040863082	68.751	0.60811	69.486	69.272	69.88	0.73511					22	11	3	0	0	0	0.53098	1	26093	26093		27.223	17.149	1	3262600			64753	2771	47164	47538	63126	63126					0.06687511245809219
YVLLASEQL	9	Unmodified	_YVLLASEQL_					0	0	0		nc|ENSG00000159082|O43426-4|SYNJ1;ENSG00000159082|ENST00000674351|SYNJ1;nc|ENSG00000159082|O43426|SYNJ1	nc|ENSG00000159082|O43426-4|SYNJ1	nc|ENSG00000159082|O43426-4|SYNJ1	MULTI-SECPEP	A375_MHC_IP_R1	1	518.6893310546875	2	518.289682	1034.56481	-0.32845	-0.00017023	-0.3547	-0.00018384	-0.68316	-0.00035407	518.289451473266	54.173	0.80922	54.173	53.861	54.67	0					43	15	4	0	0	0	0.46045	1	19289	19289		36.127	9.2434	1	34194000			64754	6347	47165	47539	63127	63127					0.04891207383184337
YVLLASEQL	9	Unmodified	_YVLLASEQL_					0	0	0		nc|ENSG00000159082|O43426-4|SYNJ1;ENSG00000159082|ENST00000674351|SYNJ1;nc|ENSG00000159082|O43426|SYNJ1	nc|ENSG00000159082|O43426-4|SYNJ1	nc|ENSG00000159082|O43426-4|SYNJ1	MULTI-SECPEP	A375_MHC_IP_R2	2	518.9713745117188	2	518.289682	1034.56481	-1.273	-0.00065976	0.42093	0.00021816	-0.85203	-0.0004416	518.2898481113322	53.472	1.0744	54.223	53.842	54.916	0.75105					44	20	4	0	0	0	0.28216	1	20228	20228		41.84	14.956	1	48894000			64755	6347	47165	47539	63128	63128					0.04891207383184337
YVLLVDQLDL	10	Unmodified	_YVLLVDQLDL_					0	0	0			REV__ENSG00000161996|ENST00000293879|WDR90	REV__ENSG00000161996|ENST00000293879|WDR90	MULTI-SECPEP	A375_MHC_IP_R2	2	596.2364501953125	2	595.836997	1189.65944	-0.48667	-0.00028998	0.40716	0.0002426	-0.079511	-4.7375E-05	595.8371384017105	84.103	0.81783	84.842	84.458	85.276	0.73962					23	15	2	0	0	0	0.69834	1	31939	31939		34.402	16.255	1	3655300	+		64756	20227	47166	47540	63129	63129					0.07219721134515567
YVLPEVSKV	9	Unmodified	_YVLPEVSKV_					0	0	0		ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-3|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4	ENSG00000115211|ENST00000347454|EIF2B4	ENSG00000115211|ENST00000347454|EIF2B4	MULTI-MSMS	A375_MHC_IP_R1	1	517.7001342773438	2	517.30005	1032.58555	-0.92885	-0.0004805	0.68828	0.00035605	-0.24057	-0.00012445	517.3004306616904	67.928	0.75856	67.928	67.603	68.361	0					45	14	5	0	0	0	0.084766	1	24571	24571		53.404	13.447	1	19287000			64757	3281	47167	47541	63130	63130					0.07055797762859584
YVMESMTYL	9	Unmodified	_YVMESMTYL_					0	0	0		ENSG00000177646|ENST00000308982|ACAD9;ENST00000511325.1_1_3:128623240-128628375:+|nuORF;ENST00000505192.5_1_3:128598473-128627108:+|nuORF	ENSG00000177646|ENST00000308982|ACAD9	ENSG00000177646|ENST00000308982|ACAD9	MULTI-MSMS	A375_MHC_IP_R1	1	569.1536865234375	2	568.753761	1135.49297	-0.43695	-0.00024852	0.35831	0.00020379	-0.078641	-4.4728E-05	568.7538546390479	27.222	0.30394	27.222	27.128	27.432	0					9	5	2	0	0	0	0.5339	1	8260	8260		18.135	2.2878	1	2669000			64758	8097	47168	47542	63131	63131					-0.06935791357204835
YVMESMTYL	9	Unmodified	_YVMESMTYL_					0	0	0		ENSG00000177646|ENST00000308982|ACAD9;ENST00000511325.1_1_3:128623240-128628375:+|nuORF;ENST00000505192.5_1_3:128598473-128627108:+|nuORF	ENSG00000177646|ENST00000308982|ACAD9	ENSG00000177646|ENST00000308982|ACAD9	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		2	568.753761	1135.49297	-0.43695	-0.00024852	0.35831	0.00020379	-0.078641	-4.4728E-05	568.7538546390479	27.222	0.30394	27.222	27.128	27.432	0	-0.047932	0.00045638	NaN	18.135	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2669000			64759	8097	47168	47542							-0.06935791357204835
YVMESMTYL	9	Unmodified	_YVMESMTYL_					0	0	0		ENSG00000177646|ENST00000308982|ACAD9;ENST00000511325.1_1_3:128623240-128628375:+|nuORF;ENST00000505192.5_1_3:128598473-128627108:+|nuORF	ENSG00000177646|ENST00000308982|ACAD9	ENSG00000177646|ENST00000308982|ACAD9	MULTI-MATCH	A375_MHC_IP_R2	2		2	568.753761	1135.49297	-0.70153	-0.000399	-0.49065	-0.00027906	-1.1922	-0.00067805	568.7534285540066	26.658	0.20226	27.318	27.212	27.414	0.65992	0.047932	-0.00050932	NaN	18.135	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2090500			64760	8097	47168	47542							-0.06935791357204835
YVNFDKYF	8	Unmodified	_YVNFDKYF_					0	0	0			REV__ENSG00000186020|ENST00000591340|ZNF529	REV__ENSG00000186020|ENST00000591340|ZNF529	MSMS	A375_MHC_IP_R1	1	548.1591186523438	2	548.260925	1094.5073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.577	1	35.577	35.077	36.077	0								0	0	0	0.16876	1	11843	11843		20.871	2.7362	1		+		64761	21939	47169	47543	63132	63132					-0.036176348223762034
YVPEHVRKL	9	Unmodified	_YVPEHVRKL_					0	0	0		ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	MULTI-MSMS	A375_MHC_IP_R1	1	381.2890625	3	380.888986	1139.64513	0.55038	0.00020963	-0.26754	-0.0001019	0.28284	0.00010773	380.8888541314205	20.999	0.91416	20.999	20.742	21.656	0					37	17	3	0	0	0	0.37338	2	5477	5468;5477		26.021	11.605	1	2514200			64762	7567	47170	47544	63133;63134	63134					0.08089113496885147
YVPEHVRKL	9	Unmodified	_YVPEHVRKL_					0	0	0		ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	MULTI-SECPEP	A375_MHC_IP_R2	2	381.2890319824219	3	380.888986	1139.64513	-0.31123	-0.00011855	0.17294	6.5871E-05	-0.13829	-5.2674E-05	380.88904788695385	19.534	0.65867	20.144	19.841	20.499	0.61029					28	12	3	0	0	0	0.63622	1	6004	6004		24.991	8.8419	1	2327100			64763	7567	47170	47544	63135	63135					0.08089113496885147
YVPKGTPESL	10	Unmodified	_YVPKGTPESL_					0	0	0		ENSG00000186190|ENST00000375494|BPIFB3	ENSG00000186190|ENST00000375494|BPIFB3	ENSG00000186190|ENST00000375494|BPIFB3	MULTI-MSMS	A375_MHC_IP_R1	1	546.1923828125	2	545.792589	1089.57063	-0.31375	-0.00017124	-0.89319	-0.0004875	-1.2069	-0.00065874	545.7927212399645	42.903	0.96421	42.903	42.487	43.451	0					23	18	2	0	0	0	0.47255	1	14946	14946		29.841	10.479	1	2763600			64764	8727	47171	47545	63136	63136					0.029423058948623293
YVPKVAGL	8	Unmodified	_YVPKVAGL_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	A375_MHC_IP_R1	1	424.1578369140625	2	423.757821	845.501089	0.37891	0.00016057	-0.17348	-7.3515E-05	0.20542	8.705E-05	423.75767152384765	45.122	0.40563	45.122	44.928	45.334	0					13	7	2	0	0	0	0.7338	1	15795	15795		24.674	0	1	1501400			64765	4149	47172	47546	63137	63137					0.07215891736746016
YVPPPCSHGL	10	Unmodified	_YVPPPCSHGL_					0	0	0			REV__ENST00000378119.8_1_6:24719560-24720079:-|nuORF	REV__ENST00000378119.8_1_6:24719560-24720079:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	535.6868896484375	2	535.260402	1068.50625	-1.032	-0.00055238	0.13739	7.3541E-05	-0.8946	-0.00047884	535.2605725640302	62.103	0.50799	62.845	62.571	63.079	0.74263					19	9	3	0	0	0	0.60556	1	23620	23620		20.454	2.3073	1	4679000	+		64766	24174	47173	47547	63138	63138					-0.02526172462944487
YVQEKRDGL	9	Unmodified	_YVQEKRDGL_					0	0	0		ENST00000481490.2_2_8:95444419-95444497:-|nuORF;nc|ENSG00000265817|O95073-2|FSBP;ENSG00000265817|ENST00000481490|FSBP	ENST00000481490.2_2_8:95444419-95444497:-|nuORF	ENST00000481490.2_2_8:95444419-95444497:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	553.7073364257812	2	554.293288	1106.57202	-0.90265	-0.00050033	-0.5029	-0.00027875	-1.4055	-0.00077909	554.2929062656198	29.944	0.45226	29.944	29.748	30.2	0					12	8	2	0	0	0	0.65246	1	9440	9440		15.847	5.0233	1	5755900			64767	9960	47174	47548	63139	63139					0.0229993998361806
YVQGKQSLF	9	Unmodified	_YVQGKQSLF_					0	0	0			REV__ENST00000369751.2_1_6:82901346-82950269:-|nuORF	REV__ENST00000369751.2_1_6:82901346-82950269:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	534.635986328125	2	535.287474	1068.5604	-1.037	-0.00055507	-0.11478	-6.1442E-05	-1.1517	-0.00061651	535.287145248549	67.449	0.81186	67.449	67.143	67.955	0					28	15	3	0	0	0	0.63327	1	24438	24438		8.7454	0	1	2140300	+		64768	24014	47175	47549	63140	63140					0.028857429602794582
YVQHPETL	8	Unmodified	_YVQHPETL_					0	0	0			REV__ORC1|p.M571I|1|0.52|ENSG00000085840|chr1:52384592-52384592|C/T|missense_variant	REV__ORC1|p.M571I|1|0.52|ENSG00000085840|chr1:52384592-52384592|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	493.15399169921875	2	493.750724	985.486896	-0.11251	-5.5554E-05	-1.054	-0.00052039	-1.1665	-0.00057594	493.7502616936587	107.65	0.61197	107.65	107.19	107.8	0					17	11	2	0	0	0	0.91495	1	39540	39540		7.9102	0	1	1025800	+		64769	16845	47176	47550	63141	63141					-0.006428054821981277
YVQLKQSLE	9	Unmodified	_YVQLKQSLE_					0	0	0			REV__ENSG00000116147|ENST00000367674|TNR	REV__ENSG00000116147|ENST00000367674|TNR	MULTI-SECPEP	A375_MHC_IP_R1	1	370.2727966308594	3	369.873001	1106.59717	0.0041351	1.5295E-06	0.57217	0.00021163	0.57631	0.00021316	369.8731675854965	28.999	0.86176	28.999	28.541	29.403	0					15	9	3	0	0	0	0.74412	1	9062	9062		10.151	0.076642	1	3112100	+		64770	17941	47177	47551	63142	63142					0.04813994786195508
YVQNWESYT	9	Unmodified	_YVQNWESYT_					0	0	0		ENST00000481597.5_1_3:50356335-50357944:-|nuORF;ENSG00000068001|ENST00000357750|HYAL2	ENST00000481597.5_1_3:50356335-50357944:-|nuORF	ENST00000481597.5_1_3:50356335-50357944:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	595.6610107421875	2	595.261653	1188.50875	-0.14719	-8.7614E-05	-0.16045	-9.5507E-05	-0.30763	-0.00018312	595.2613640121411	107.65	1.2727	107.65	107.29	108.56	0					80	24	6	0	0	0	0.41409	1	39454	39454		24.021	2.4836	1	40938000			64771	1448	47178	47552	63143	63143					-0.07796045524287365
YVQNWESYT	9	Unmodified	_YVQNWESYT_					0	0	0		ENST00000481597.5_1_3:50356335-50357944:-|nuORF;ENSG00000068001|ENST00000357750|HYAL2	ENST00000481597.5_1_3:50356335-50357944:-|nuORF	ENST00000481597.5_1_3:50356335-50357944:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	595.261653	1188.50875	-0.64111	-0.00038163	-0.38975	-0.000232	-1.0309	-0.00061363	595.2613536029924	107.02	1.4759	107.77	107.34	108.81	0.75436	0.058775	-0.00012839	NaN	24.021	76	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31907000			64772	1448	47178	47552							-0.07796045524287365
YVRGSAPHIW	10	Unmodified	_YVRGSAPHIW_					0	0	0			REV__nc|ENSG00000147853|Q9UIJ7-2|AK3	REV__nc|ENSG00000147853|Q9UIJ7-2|AK3	MULTI-MSMS	A375_MHC_IP_R1	1	396.2761535644531	3	395.876969	1184.60908	0.02315	9.1644E-06	-0.086346	-3.4182E-05	-0.063196	-2.5018E-05	395.8763995105603	20.326	1.0177	20.326	19.827	20.844	0					32	19	3	0	0	0	0.54638	1	5194	5194		24.882	2.2235	1	6149300	+		64773	19611	47179	47553	63144	63144					0.02415656320022208
YVRIVKAIL	9	Unmodified	_YVRIVKAIL_					0	0	0		TRPC6|p.E178K|1|0.25|ENSG00000137672|chr11:101504437-101504437|C/T|missense_variant	TRPC6|p.E178K|1|0.25|ENSG00000137672|chr11:101504437-101504437|C/T|missense_variant	TRPC6|p.E178K|1|0.25|ENSG00000137672|chr11:101504437-101504437|C/T|missense_variant	MULTI-MSMS	A375_MHC_IP_R2	2	358.945068359375	3	358.905977	1073.6961	-0.32629	-0.00011711	-0.44934	-0.00016127	-0.77563	-0.00027838	358.90582799764127	39.239	0.45743	40.013	39.812	40.269	0.77451					15	8	2	0	0	0	0.75032	1	14400	14400		2.4985	1.427	1	2400900			64774	30078	47180	47554	63145	63145					0.16220062541742664
YVSCDDPEV	9	Unmodified	_YVSCDDPEV_					0	0	0		ENSG00000119685|ENST00000298832|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	MULTI-MSMS	A375_MHC_IP_R1	1	514.1250610351562	2	513.707865	1025.40118	-0.70803	-0.00036372	0.72865	0.00037431	0.020612	1.0588E-05	513.7081878750593	86.294	0.65761	86.294	85.971	86.629	0					28	12	3	0	0	0	0.43185	1	31699	31699		23.148	3.7094	1	14166000			64775	3611	47181	47555	63146	63146					-0.11050758450028297
YVSNAQLIAF	10	Unmodified	_YVSNAQLIAF_					0	0	0		ENSG00000138604|ENST00000261858|GLCE	ENSG00000138604|ENST00000261858|GLCE	ENSG00000138604|ENST00000261858|GLCE	MULTI-SECPEP	A375_MHC_IP_R1	1	375.5931701660156	3	375.86948	1124.58661	0.54774	0.00020588	-0.9875	-0.00037117	-0.43976	-0.00016529	375.8691593229639	54.054	0.50434	54.054	53.809	54.314	0					14	9	2	0	0	0	0.91909	1	19285	19285		8.4443	4.3277	1	1049200			64776	5005	47182	47556	63147	63147					0.029300121317419325
YVTDVLYRV	9	Unmodified	_YVTDVLYRV_					0	0	0		ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1	ENSG00000157106|ENST00000446231|SMG1	ENSG00000157106|ENST00000446231|SMG1	MULTI-SECPEP	A375_MHC_IP_R1	1	564.7078247070312	2	564.308406	1126.60226	-0.55627	-0.00031391	0.18878	0.00010653	-0.36749	-0.00020738	564.3084015319051	84.05	0.70651	84.05	83.736	84.442	0					29	13	3	0	0	0	0.13199	1	30784	30784		75.761	25.828	1	4668700			64777	6228	47183	47557	63148	63148					0.04402298648778924
YVTDVLYRV	9	Unmodified	_YVTDVLYRV_					0	0	0		ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1	ENSG00000157106|ENST00000446231|SMG1	ENSG00000157106|ENST00000446231|SMG1	MULTI-SECPEP	A375_MHC_IP_R2	2	564.7084350585938	2	564.308406	1126.60226	-0.46002	-0.00025959	-0.23034	-0.00012998	-0.69036	-0.00038958	564.3082137897841	83.202	0.66057	83.942	83.645	84.305	0.73962					31	12	3	0	0	0	0.09145	1	31623	31623		75.761	29.74	1	5772400			64778	6228	47183	47557	63149	63149					0.04402298648778924
YVTPVNRNV	9	Unmodified	_YVTPVNRNV_					0	0	0		nc|ENSG00000177885|P62993-2|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF;ENSG00000177885|ENST00000316804|GRB2	nc|ENSG00000177885|P62993-2|GRB2	nc|ENSG00000177885|P62993-2|GRB2	MULTI-SECPEP	A375_MHC_IP_R1	1	531.6901245117188	2	531.290548	1060.56654	-0.56736	-0.00030143	0.028423	1.5101E-05	-0.53894	-0.00028633	531.2906521074099	31.794	0.4082	31.794	31.565	31.973	0					16	7	3	0	0	0	0.24548	1	10205	10205		43.858	22.112	1	4765900			64779	8115	47184	47558	63150	63150					0.03868261191792044
YVTPVNRNV	9	Unmodified	_YVTPVNRNV_					0	0	0		nc|ENSG00000177885|P62993-2|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF;ENSG00000177885|ENST00000316804|GRB2	nc|ENSG00000177885|P62993-2|GRB2	nc|ENSG00000177885|P62993-2|GRB2	MULTI-SECPEP	A375_MHC_IP_R2	2	531.6898803710938	2	531.290548	1060.56654	-0.6908	-0.00036701	-0.39915	-0.00021206	-1.0899	-0.00057908	531.2903299818364	31.088	0.45821	31.806	31.567	32.026	0.71857					19	8	3	0	0	0	0.35487	1	10977	10977		43.858	20.71	1	3912500			64780	8115	47184	47558	63151	63151					0.03868261191792044
YVTRGYDSI	9	Unmodified	_YVTRGYDSI_					0	0	0			REV__ENST00000523214.5_1_8:125500837-125516518:-|nuORF	REV__ENST00000523214.5_1_8:125500837-125516518:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	536.5647583007812	2	537.266739	1072.51892	-1.1957	-0.00064242	0.25329	0.00013608	-0.94244	-0.00050634	537.2666800055165	24.391	0.35646	25.035	24.958	25.314	0.64368					9	6	2	0	0	0	0.56537	1	8002	8002		29.082	9.8246	1	4882500	+		64781	25739	47185	47559	63152	63152					-0.014434377990482972
YVTTSTRTY	9	Unmodified	_YVTTSTRTY_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R1	1	546.1793212890625	2	546.272021	1090.52949	-0.69125	-0.00037761	-0.76457	-0.00041766	-1.4558	-0.00079528	546.271596887873	19.343	0.43628	19.343	19.238	19.674	0					14	8	2	0	0	0	0.14858	2	4670	4670;4812		41.956	21.502	1	6546100			64782	1093	47186	47560	63153;63154	63153					-0.012154551446201367
YVTTSTRTY	9	Unmodified	_YVTTSTRTY_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R1	1	546.671630859375	2	546.272021	1090.52949	-0.52996	-0.0002895	-0.27719	-0.00015142	-0.80714	-0.00044092	546.2719966196707	24.977	2.3286	24.977	24.749	27.078	0					148	45	7	0	0	0	0.0094735	6	7180	7180;7239;7272;7322;7444;7721		107.1	63.961	1	3955999999.9999995			64783	1093	47186	47560	63155;63156;63157;63158;63159;63160	63155					-0.012154551446201367
YVTTSTRTY	9	Unmodified	_YVTTSTRTY_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R2	2	546.6714477539062	2	546.272021	1090.52949	-1.1365	-0.00062083	-0.074208	-4.0538E-05	-1.2107	-0.00066137	546.2720990965317	24.441	3.5603	25.085	24.857	28.417	0.64368					164	69	6	0	0	0	0.0083527	4	8004	7976;8004;8282;8619		128.93	84.951	1	2426500000			64784	1093	47186	47560	63161;63162;63163;63164	63162					-0.012154551446201367
YVTTSTRTY	9	Unmodified	_YVTTSTRTY_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	A375_MHC_IP_R2	2	546.2118530273438	2	546.272021	1090.52949	-1.2255	-0.00066943	0.16249	8.8766E-05	-1.063	-0.00058067	546.2718953358307	33.513	0.6581	34.266	33.942	34.6	0.75225					24	12	3	0	0	0	0.44024	1	11903	11903		22.736	3.4793	1	3027000			64785	1093	47186	47560	63165	63165					-0.012154551446201367
YVVEPYRKY	9	Unmodified	_YVVEPYRKY_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	A375_MHC_IP_R1	1	406.6168518066406	3	406.21688	1215.62881	-0.55983	-0.00022741	0.54108	0.0002198	-0.018754	-7.6183E-06	406.21705084032794	32.64	0.70655	32.64	32.333	33.04	0					37	13	4	0	0	0	0.21241	1	10532	10532		37.075	20.926	1	30478000			64786	9326	47187	47561	63166	63166					0.029619875401522222
YVVEPYRKY	9	Unmodified	_YVVEPYRKY_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	A375_MHC_IP_R1	1	609.2213745117188	2	608.821681	1215.62881	-0.57486	-0.00034999	0.14056	8.5577E-05	-0.4343	-0.00026441	608.8218050458202	32.636	0.45328	32.636	32.383	32.836	0					20	8	3	0	0	0	0.05217	1	10561	10561		89.401	53.274	1	5939100			64787	9326	47187	47561	63167	63167					0.029619875401522222
YVVEPYRKY	9	Unmodified	_YVVEPYRKY_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	A375_MHC_IP_R2	2	406.6167907714844	3	406.21688	1215.62881	0.0041252	1.6757E-06	0.045655	1.8546E-05	0.04978	2.0221E-05	406.21683328008265	31.912	0.60968	32.649	32.35	32.96	0.73691					36	11	4	0	0	0	0.062639	1	11286	11286		59.368	37.778	1	38904000			64788	9326	47187	47561	63168	63168					0.029619875401522222
YVVEPYRKY	9	Unmodified	_YVVEPYRKY_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	A375_MHC_IP_R2	2	609.2215576171875	2	608.821681	1215.62881	-0.45584	-0.00027752	0.20062	0.00012214	-0.25522	-0.00015538	608.8218028132144	31.918	0.40467	32.655	32.453	32.857	0.73691					16	7	3	0	0	0	0.036758	1	11312	11312		89.401	60.319	1	7142600			64789	9326	47187	47561	63169	63169					0.029619875401522222
YVVQGPKLQL	10	Unmodified	_YVVQGPKLQL_					0	0	0			REV__ENSG00000163812|ENST00000424952|ZDHHC3	REV__ENSG00000163812|ENST00000424952|ZDHHC3	MULTI-SECPEP	A375_MHC_IP_R1	1	573.239990234375	2	572.839874	1143.66519	-0.0026569	-1.522E-06	0.059495	3.4081E-05	0.056838	3.2559E-05	572.8398731614036	109	0.60902	109	108.71	109.32	0					23	11	3	0	0	0	0.61429	1	39982	39982		37.974	14.184	1	2967400	+		64790	20415	47188	47562	63170	63170					0.09910864436869815
YVVRGGTL	8	Unmodified	_YVVRGGTL_					0	0	0		ENSG00000066422|ENST00000312938|ZBTB11	ENSG00000066422|ENST00000312938|ZBTB11	ENSG00000066422|ENST00000312938|ZBTB11	MULTI-MSMS	A375_MHC_IP_R1	1	864.8932495117188	1	864.493778	863.486502	-0.65242	-0.00056402	0.50079	0.00043293	-0.15164	-0.00013109	864.4940808439417	144.84	1.0317	144.84	144.55	145.58	0					61	52	2	0	0	0	0.77861	2	55481	55481;55580		0	0	1	3131900			64791	1411	47189	47563	63171;63172	63171					0.04929819588630835
YVVRGTGKEG	10	Unmodified	_YVVRGTGKEG_					0	0	0		CDC73|p.W43R|1|0.51|ENSG00000134371|chr1:193122327-193122327|T/A|missense_variant	CDC73|p.W43R|1|0.51|ENSG00000134371|chr1:193122327-193122327|T/A|missense_variant	CDC73|p.W43R|1|0.51|ENSG00000134371|chr1:193122327-193122327|T/A|missense_variant	MULTI-MSMS	A375_MHC_IP_R1	1	1067.1036376953125	1	1065.56873	1064.56146	-0.31312	-0.00033366	-0.92784	-0.00098868	-1.241	-0.0013223	1065.5679537477886	29.445	0.30416	29.445	29.302	29.607	0					15	5	3	0	0	0	0.70496	1	9258	9258		10.074	2.1638	1	32366000			64792	343	47190	47564	63173	63173					0.03175957329199264
YVVTWIVGAKR	11	Unmodified	_YVVTWIVGAKR_					0	0	0		nc|ENSG00000054983|P54803-5|GALC;nc|ENSG00000054983|P54803-4|GALC;nc|ENSG00000054983|P54803-3|GALC;ENSG00000054983|ENST00000261304|GALC	nc|ENSG00000054983|P54803-5|GALC	nc|ENSG00000054983|P54803-5|GALC	MULTI-MSMS	A375_MHC_IP_R1	1	431.653564453125	3	431.255557	1290.74484	-0.44217	-0.00019069	-1.6474	-0.00071046	-2.0896	-0.00090115	431.2537759015822	135.61	1.071	135.61	135.03	136.1	0					37	20	4	0	0	0	0.73881	1	52292	52292		0.50596	0	1	3113200			64793	1265	47191	47565	63174	63174					0.11109931110831894
YVWGKRIKV	9	Unmodified	_YVWGKRIKV_					0	0	0		ENST00000501702.6_1_5:127359016-127359112:-|nuORF	ENST00000501702.6_1_5:127359016-127359112:-|nuORF	ENST00000501702.6_1_5:127359016-127359112:-|nuORF	MSMS	A375_MHC_IP_R2	2	574.8269653320312	2	574.850576	1147.6866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.837	1	84.577	84.077	85.077	0.73962								0	0	0	0.15486	1	31868	31868		4.756	0	1				64794	12784	47192	47566	63175	63175					0.1186629425621959
YVWMPGYDGV	10	Unmodified	_YVWMPGYDGV_					0	0	0			REV__ENSG00000130340|ENST00000392185|SNX9	REV__ENSG00000130340|ENST00000392185|SNX9	MSMS	A375_MHC_IP_R1	1	396.14447021484375	3	396.179437	1185.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.673	1	72.673	72.173	73.173	0								0	0	0	0.15398	1	26443	26443		4.1895	2.7344	1		+		64795	18534	47193	47567	63176	63176					-0.06885609528376335
YVWQLHGS	8	Unmodified	_YVWQLHGS_					0	0	0			REV__ENSG00000176871|ENST00000315436|WSB2	REV__ENSG00000176871|ENST00000315436|WSB2	MULTI-MSMS	A375_MHC_IP_R1	1	497.23394775390625	2	495.245609	988.476666	-0.34858	-0.00017263	0.12041	5.9632E-05	-0.22817	-0.000113	495.245681595828	61.763	1.2277	61.763	61.483	62.711	0					72	23	5	0	0	0	0.76248	1	22331	22331		16.942	0	1	142800000	+		64796	21422	47194	47568	63177	63177					-0.018033684167676256
YVYHFTLR	8	Unmodified	_YVYHFTLR_					0	0	0			REV__nc|ENSG00000116885|Q8WVF1-4|OSCP1	REV__nc|ENSG00000116885|Q8WVF1-4|OSCP1	MULTI-SECPEP	A375_MHC_IP_R2	2	367.123779296875	3	366.862548	1097.56581	-0.071741	-2.6319E-05	0.25184	9.2392E-05	0.1801	6.6073E-05	367.1966369225138	51.458	0.30305	52.21	52.017	52.321	0.75225					8	5	2	0	0	0	0.97021	1	19297	19297		12.241	7.3436	1	389510	+		64797	27189	47195	47569	63178	63178					0.02093466542760325
YVYIHTYVYTY	11	Unmodified	_YVYIHTYVYTY_					0	0	0			REV__ENST00000407010.6_2_7:16128723-16129239:-|nuORF	REV__ENST00000407010.6_2_7:16128723-16129239:-|nuORF	MSMS	A375_MHC_IP_R1	1	495.6607360839844	3	495.574732	1483.70237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.981	1	54.981	54.481	55.481	0								0	0	0	0.16269	1	19650	19650		4.7159	0.59929	1		+		64798	24449	47196	47570	63179	63179					-0.02013508808045117
YVYIVLDPFTK	11	Unmodified	_YVYIVLDPFTK_					0	0	0			REV__ENSG00000135828|ENST00000367559|RNASEL	REV__ENSG00000135828|ENST00000367559|RNASEL	MSMS	A375_MHC_IP_R2	2	679.4373779296875	2	679.373746	1356.73294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.121	1	10.568	10.068	11.068	0.44698								0	0	0	0.1636	1	3147	3147		0	0	1		+		64799	18888	47197	47571	63180	63180					0.06884269576949009
YVYNDYSV	8	Unmodified	_YVYNDYSV_					0	0	0		PLXNA2|p.G442D|1|0.17|ENSG00000076356|chr1:208210326-208210326|C/T|missense_variant	PLXNA2|p.G442D|1|0.17|ENSG00000076356|chr1:208210326-208210326|C/T|missense_variant	PLXNA2|p.G442D|1|0.17|ENSG00000076356|chr1:208210326-208210326|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	510.9737854003906	2	511.726915	1021.43928	-0.68419	-0.00035012	-1.6259	-0.00083204	-2.3101	-0.0011822	511.7258502511383	95.876	0.45726	96.627	96.449	96.906	0.75045					12	8	2	0	0	0	0.96184	1	36441	36441		13.042	3.695	1	1296100			64800	15200	47198	47572	63181	63181					-0.07058504473047833
YVYPTAKA	8	Unmodified	_YVYPTAKA_					0	0	0		ENSG00000154175|ENST00000471714|ABI3BP;nc|ENSG00000154175|Q7Z7G0-3|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	MSMS	A375_MHC_IP_R2	2	456.8111267089844	2	456.744911	911.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.8302	1	4.266	3.766	4.766	0.43585								0	0	0	0.16876	1	1244	1244		0	0	1				64801	6068	47199	47573	63182	63182					0.015989974944545793
YVYYILVQHS	10	Unmodified	_YVYYILVQHS_					0	0	0			REV__HUERS-P3-int_dup372|chrY:9141681-9141905:-|1.267927450943663|0.0102572563970316|6.95|471.0|15|1|anti-sense	REV__HUERS-P3-int_dup372|chrY:9141681-9141905:-|1.267927450943663|0.0102572563970316|6.95|471.0|15|1|anti-sense	MSMS	A375_MHC_IP_R2	2	428.6484069824219	3	428.892284	1283.65502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.973	1	57.723	57.223	58.223	0.75015								0	0	0	0.15583	1	21540	21540		1.9064	0	1		+		64802	26768	47200	47574	63183	63183					0.024542567115986458
YWFDAQQNTWF	11	Unmodified	_YWFDAQQNTWF_					0	0	0		ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	MSMS	A375_MHC_IP_R2	2	502.45367431640625	3	502.554331	1504.64116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.658	1	31.377	30.877	31.877	0.71857								0	0	0	0.16336	1	10788	10788		1.2148	0.70888	1				64803	7548	47201	47575	63184	63184					-0.09097020787498877
YWGNLTAG	8	Unmodified	_YWGNLTAG_					0	0	0			REV__ENSG00000127804|ENST00000263092|METTL16	REV__ENSG00000127804|ENST00000263092|METTL16	MULTI-SECPEP	A375_MHC_IP_R1	1	441.6112060546875	2	441.211235	880.407917	-0.089558	-3.9514E-05	-0.10369	-4.5749E-05	-0.19325	-8.5264E-05	441.21120728844363	31.825	0.46039	31.825	31.667	32.127	0					11	8	2	0	0	0	0.8211	1	10269	10269		16.942	4.4107	1	2124600	+		64804	18430	47202	47576	63185	63185					-0.03707032716476988
YWGNLTAG	8	Unmodified	_YWGNLTAG_					0	0	0			REV__ENSG00000127804|ENST00000263092|METTL16	REV__ENSG00000127804|ENST00000263092|METTL16	MULTI-MATCH	A375_MHC_IP_R2	2		2	441.211235	880.407917	-0.37204	-0.00016415	-0.16787	-7.4065E-05	-0.5399	-0.00023821	441.2110444096502	31.212	0.35772	31.931	31.77	32.128	0.71857	0.052821	-3.7332E-05	NaN	16.942	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2299100	+		64805	18430	47202	47576							-0.03707032716476988
YWHLFARKVYM	11	Unmodified	_YWHLFARKVYM_					0	0	0			REV__TUBAL3|p.A407V|1|0.23|ENSG00000178462|chr10:5393638-5393638|G/A|missense_variant	REV__TUBAL3|p.A407V|1|0.23|ENSG00000178462|chr10:5393638-5393638|G/A|missense_variant	MSMS	A375_MHC_IP_R1	1	757.3928833007812	2	757.392282	1512.77001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.033	1	35.033	34.533	35.533	0								0	0	0	0.16334	1	11613	11613		1.3295	0	1		+		64806	28934	47203	47577	63186	63186					0.034136626417648586
YWQNHPEL	8	Unmodified	_YWQNHPEL_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	A375_MHC_IP_R1	1	544.1536254882812	2	543.753798	1085.49304	-0.29019	-0.00015779	0.28266	0.0001537	-0.0075263	-4.0924E-06	543.7539377024954	49.667	1.6781	49.667	48.729	50.408	0					97	32	6	0	0	0	0.00091922	3	17514	17514;17713;17801		156.16	116.2	1	97670000			64807	3576	47204	47578	63187;63188;63189	63187					-0.04628287250670837
YWQNHPEL	8	Unmodified	_YWQNHPEL_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	A375_MHC_IP_R2	2	544.1529541015625	2	543.753798	1085.49304	-0.94025	-0.00051126	0.20272	0.00011023	-0.73753	-0.00040104	543.7538983658213	48.856	1.6259	49.614	49.231	50.857	0.75737					90	31	6	0	0	0	0.05639	1	18291	18291		128.37	88.408	1	94603000			64808	3576	47204	47578	63190	63190					-0.04628287250670837
YWQREERFRAM	11	Unmodified	_YWQREERFRAM_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MSMS	A375_MHC_IP_R2	2	786.3807373046875	2	786.380434	1570.74632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.2	1	142.23	141.73	142.73	0.030731								0	0	0	0.16354	1	55593	55593		0.30703	0	1				64809	3882	47205	47579	63191	63191					-0.016228028627210733
YWRETIKKILY	11	Unmodified	_YWRETIKKILY_					0	0	0		ENST00000593682.1_1_19:12690915-12691281:-|nuORF	ENST00000593682.1_1_19:12690915-12691281:-|nuORF	ENST00000593682.1_1_19:12690915-12691281:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	505.0224914550781	3	504.957288	1511.85004	-0.50068	-0.00025282	0.14053	7.0962E-05	-0.36015	-0.00018186	504.9573798927155	143.14	0.4025	143.17	142.94	143.34	0.030731					11	7	2	0	0	0	1.0015	1	55989	55989		0.094841	0	1	795670			64810	13829	47206	47580	63192	63192					0.1145842751661803
YWRYTQWLS	9	Unmodified	_YWRYTQWLS_					0	0	0		ENST00000369578.6_1_6:87925633-87925750:+|nuORF	ENST00000369578.6_1_6:87925633-87925750:+|nuORF	ENST00000369578.6_1_6:87925633-87925750:+|nuORF	MSMS	A375_MHC_IP_R2	2	434.8968811035156	3	434.880379	1301.61931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.638	1	31.357	30.857	31.857	0.71857								0	0	0	0.15486	1	10780	10780		6.1918	1.4759	1				64811	11136	47207	47581	63193	63193					-0.019437807453869027
YWWPNIWTKDY	11	Unmodified	_YWWPNIWTKDY_					0	0	0		GPR139|p.E172K|1|0.18|ENSG00000180269|chr16:20032283-20032283|C/T|missense_variant	GPR139|p.E172K|1|0.18|ENSG00000180269|chr16:20032283-20032283|C/T|missense_variant	GPR139|p.E172K|1|0.18|ENSG00000180269|chr16:20032283-20032283|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	524.6710205078125	3	524.58211	1570.7245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.025	1	87.758	87.258	88.258	0.733								0	0	0	0.16331	1	33094	33094		0.50596	0.051438	1				64812	14063	47208	47582	63194	63194					-0.038032843396649696
YWWRFNYRQLY	11	Unmodified	_YWWRFNYRQLY_					0	0	0		nc|ENSG00000076356|O75051-2|PLXNA2;ENST00000460870.1_1_1:208383501-208390355:-|nuORF	nc|ENSG00000076356|O75051-2|PLXNA2	nc|ENSG00000076356|O75051-2|PLXNA2	MSMS	A375_MHC_IP_R2	2	847.9116821289062	2	847.914967	1693.81538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.07	1	141.12	140.62	141.62	0.04216								0	0	0	0.16354	1	55195	55195		0.30703	0.30703	1				64813	14481	47209	47583	63195	63195					-0.0037739557149052416
YWYQSPIT	8	Unmodified	_YWYQSPIT_					0	0	0			REV__ENSG00000143418|ENST00000368954|CERS2	REV__ENSG00000143418|ENST00000368954|CERS2	MSMS	A375_MHC_IP_R1	1	529.2059326171875	2	529.2531	1056.49165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.752	1	53.752	53.252	54.252	0								0	0	0	0.16876	1	19176	19176		19.439	0.18201	1		+		64814	19357	47210	47584	63196	63196					-0.034339213394332546
YYAFSTAF	8	Unmodified	_YYAFSTAF_					0	0	0			REV__nc|ENSG00000197901|Q4U2R8-3|SLC22A6	REV__nc|ENSG00000197901|Q4U2R8-3|SLC22A6	MULTI-MSMS	A375_MHC_IP_R1	1	485.16314697265625	2	485.221268	968.427984	-0.34766	-0.00016869	-0.3215	-0.000156	-0.66915	-0.00032469	485.22094196180694	52.548	0.4077	52.548	52.336	52.744	0					11	7	2	0	0	0	0.7758	1	18620	18620		10.183	0.83596	1	1927200	+		64815	22329	47211	47585	63197	63197					-0.05749281776525095
YYAMREDF	8	Unmodified	_YYAMREDF_					0	0	0			REV__nc|ENSG00000084636|Q07092-2|COL16A1	REV__nc|ENSG00000084636|Q07092-2|COL16A1	MULTI-SECPEP	A375_MHC_IP_R2	2	1094.5716552734375	1	1094.46116	1093.45388	0.19776	0.00021644	-4.1404	-0.0045315	-3.9427	-0.0043151	1094.457688860886	118.07	0.50621	118.68	118.54	119.05	0.60909					20	9	3	0	0	0	0.972	1	44851	44851		6.3541	1.1234	1	39650000	+		64816	16824	47212	47586	63198	63198					-0.0891075559654837
YYCFDKSMC	9	Unmodified	_YYCFDKSMC_					0	0	0		ENSG00000137338|ENST00000682144|PGBD1	ENSG00000137338|ENST00000682144|PGBD1	ENSG00000137338|ENST00000682144|PGBD1	MULTI-MSMS	A375_MHC_IP_R2	2	387.8810119628906	3	387.146751	1158.41842	-0.28757	-0.00011133	0.4472	0.00017313	0.15962	6.1798E-05	387.1469406675104	96.826	0.60527	97.581	97.268	97.873	0.75587					24	11	3	0	0	0	0.70307	1	36777	36777		4.1895	4.1895	1	3383700			64817	4878	47213	47587	63199	63199					-0.1544487744019989
YYCNCDAGQN	10	Unmodified	_YYCNCDAGQN_					0	0	0		ENSG00000154529|ENST00000377561|CNTNAP3B	ENSG00000154529|ENST00000377561|CNTNAP3B	ENSG00000154529|ENST00000377561|CNTNAP3B	MSMS	A375_MHC_IP_R2	2	575.6596069335938	2	575.700048	1149.38554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.763	1	86.499	85.999	86.999	0.73601								0	0	0	0.15451	1	32610	32610		6.2058	1.4498	1				64818	6094	47214	47588	63200	63200					-0.1831736823871779
YYDEFALS	8	Unmodified	_YYDEFALS_					0	0	0			REV__ENSG00000185313|ENST00000449082|SCN10A	REV__ENSG00000185313|ENST00000449082|SCN10A	MSMS	A375_MHC_IP_R1	1	504.18310546875	2	504.221465	1006.42838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.395	1	36.395	35.895	36.895	0								0	0	0	0.16876	1	12180	12180		18.135	4.6271	1		+		64819	21888	47215	47589	63201	63201					-0.07457906847332652
YYDNCSFYFWL	11	Unmodified	_YYDNCSFYFWL_					0	0	0		ENSG00000274391|ENST00000618007|TPTE;nc|ENSG00000274391|P56180-4|TPTE;nc|ENSG00000274391|P56180-3|TPTE;nc|ENSG00000274391|P56180-2|TPTE	ENSG00000274391|ENST00000618007|TPTE	ENSG00000274391|ENST00000618007|TPTE	MSMS	A375_MHC_IP_R1	1	507.44281005859375	3	507.544556	1519.61184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.92	1	54.92	54.42	55.42	0								0	0	0	0.16331	1	19628	19628		0.50596	0	1				64820	10002	47216	47590	63202	63202					-0.12718301127983977
YYDNCSFYFWL	11	Unmodified	_YYDNCSFYFWL_					0	0	0		ENSG00000274391|ENST00000618007|TPTE;nc|ENSG00000274391|P56180-4|TPTE;nc|ENSG00000274391|P56180-3|TPTE;nc|ENSG00000274391|P56180-2|TPTE	ENSG00000274391|ENST00000618007|TPTE	ENSG00000274391|ENST00000618007|TPTE	MSMS	A375_MHC_IP_R2	2	507.4421691894531	3	507.544556	1519.61184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.953	1	54.704	54.204	55.204	0.75105								0	0	0	0.16331	1	20368	20368		0.50596	0	1				64821	10002	47216	47590	63203	63203					-0.12718301127983977
YYEDDEED	8	Unmodified	_YYEDDEED_					0	0	0		ENSG00000198700|ENST00000361565|IPO9;IPO9|p.D982N|1|0.17|ENSG00000198700|chr1:201875157-201875157|G/A|missense_variant	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-SECPEP	A375_MHC_IP_R2	2	1077.7548828125	1	1077.35311	1076.34583	0.086764	9.3475E-05	0.91418	0.0009849	1.0009	0.0010784	1077.3553036465426	123.31	1.4175	123.68	122.97	124.39	0.37661					40	27	2	0	0	0	0.972	1	47140	47140		2.8892	0	1	83349000			64822	9302	47217	47591	63204	63204					-0.18928893436782346
YYEDDEED	8	Unmodified	_YYEDDEED_					0	0	0		ENSG00000198700|ENST00000361565|IPO9;IPO9|p.D982N|1|0.17|ENSG00000198700|chr1:201875157-201875157|G/A|missense_variant	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-MATCH	A375_MHC_IP_R1	1		1	1077.35311	1076.34583	-0.47875	-0.00051578	1.9363	0.0020861	1.4576	0.0015703	1077.3562590773745	123.8	1.0591	123.8	123.08	124.14	0	0.056974	0.00076926	NaN	2.8892	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133510000			64823	9302	47217	47591							-0.18928893436782346
YYEHDEREEAH	11	Unmodified	_YYEHDEREEAH_					0	0	0			REV__nc|ENSG00000185634|Q6S5L8-2|SHC4	REV__nc|ENSG00000185634|Q6S5L8-2|SHC4	MSMS	A375_MHC_IP_R2	2	739.4903564453125	2	739.302569	1476.59059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.42	1	119.03	118.53	119.53	0.60909								0	0	0	0.1629	1	44955	44955		3.5965	0.31518	1		+		64824	27415	47218	47592	63205	63205					-0.12864594903135185
YYELWWFWLVW	11	Unmodified	_YYELWWFWLVW_					0	0	0		nc|ENSG00000166272|Q9NX94|WBP1L;ENSG00000166272|ENST00000448841|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	MSMS	A375_MHC_IP_R1	1	845.9073486328125	2	845.908288	1689.80202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.94	1	120.94	120.44	121.44	0								0	0	0	0.16331	1	44862	44862		1.4819	1.4819	1				64825	7055	47219	47593	63206	63206					-0.015286464034716118
YYENIYEN	8	Unmodified	_YYENIYEN_					0	0	0			REV__nc|ENSG00000107331|Q9BZC7|ABCA2	REV__nc|ENSG00000107331|Q9BZC7|ABCA2	MSMS	A375_MHC_IP_R1	1	554.2327270507812	2	554.235104	1106.45566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.847	1	70.847	70.347	71.347	0								0	0	0	0.16876	1	25730	25730		30.225	1.738	1		+		64826	17482	47220	47594	63207	63207					-0.09331423306934994
YYENIYEN	8	Unmodified	_YYENIYEN_					0	0	0			REV__nc|ENSG00000107331|Q9BZC7|ABCA2	REV__nc|ENSG00000107331|Q9BZC7|ABCA2	MSMS	A375_MHC_IP_R2	2	554.2317504882812	2	554.235104	1106.45566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.798	1	70.532	70.032	71.032	0.73421								0	0	0	0.16876	1	26457	26457		36.044	7.5574	1		+		64827	17482	47220	47594	63208	63208					-0.09331423306934994
YYERQQSD	8	Unmodified	_YYERQQSD_					0	0	0		nc|ENSG00000151376|Q16798-2|ME3;ENSG00000151376|ENST00000524826|ME3	nc|ENSG00000151376|Q16798-2|ME3	nc|ENSG00000151376|Q16798-2|ME3	MULTI-SECPEP	A375_MHC_IP_R2	2	544.1547241210938	2	544.735803	1087.45705	-0.75713	-0.00041243	0.33744	0.00018382	-0.41969	-0.00022862	544.7361643338643	46.015	0.70517	46.78	46.303	47.008	0.76519					15	13	2	0	0	0	0.95423	1	17057	17057		18.135	16.291	1	2271300			64828	5901	47221	47595	63209	63209					-0.08317789218176586
YYESRKKHEEI	11	Unmodified	_YYESRKKHEEI_					0	0	0		tr|U7T4Z9|U7T4Z9_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00618PE=4SV=1	tr|U7T4Z9|U7T4Z9_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00618PE=4SV=1	tr|U7T4Z9|U7T4Z9_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00618PE=4SV=1	MSMS	A375_MHC_IP_R1	1	494.63507080078125	3	494.584291	1480.73104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.723	1	25.723	25.223	26.223	0								0	0	0	0.1624	1	7556	7556		2.8433	0	1				64829	30007	47222	47596	63210	63210					0.009906088211209862
YYFERKEEV	9	Unmodified	_YYFERKEEV_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	A375_MHC_IP_R1	1	631.751220703125	2	631.806228	1261.5979	-0.58612	-0.00037031	0.82966	0.00052418	0.24354	0.00015387	631.8063257983794	33.773	0.3526	33.773	33.597	33.95	0					10	6	3	0	0	0	0.56584	1	11090	11090		12.241	7.4846	1	1341800			64830	903	47223	47597	63211	63211					-0.02243210564756737
YYFERKEEV	9	Unmodified	_YYFERKEEV_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MATCH	A375_MHC_IP_R2	2		2	631.806228	1261.5979	-0.92709	-0.00058574	-0.27984	-0.0001768	-1.2069	-0.00076254	632.3075510052953	33.011	0.25525	33.748	33.671	33.926	0.73692	-0.012605	-0.0012192	NaN	12.241	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1544100			64831	903	47223	47597							-0.02243210564756737
YYFINSQGHP	10	Unmodified	_YYFINSQGHP_					0	0	0		ENSG00000125734|ENST00000264080|GPR108	ENSG00000125734|ENST00000264080|GPR108	ENSG00000125734|ENST00000264080|GPR108	MULTI-MSMS	A375_MHC_IP_R1	1	613.6846313476562	2	613.285463	1224.55637	-0.21658	-0.00013283	-1.2223	-0.0007496	-1.4389	-0.00088243	613.2847622358161	20.46	0.3562	20.46	20.334	20.69	0					11	6	2	0	0	0	0.71466	1	5292	5292		5.7319	0.43497	1	1285300			64832	3983	47224	47598	63212	63212					-0.046923465334202774
YYFNWCSDIFY	11	Unmodified	_YYFNWCSDIFY_					0	0	0		TMEM202|p.L195F|1|0.3|ENSG00000187806|chr15:72407181-72407181|C/T|missense_variant	TMEM202|p.L195F|1|0.3|ENSG00000187806|chr15:72407181-72407181|C/T|missense_variant	TMEM202|p.L195F|1|0.3|ENSG00000187806|chr15:72407181-72407181|C/T|missense_variant	MSMS	A375_MHC_IP_R1	1	507.442626953125	3	507.544556	1519.61184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.252	1	56.252	55.752	56.752	0								0	0	0	0.16331	1	20148	20148		0.50596	0	1				64833	29363	47225	47599	63213	63213					-0.1271830112796124
YYFNWCSDIFY	11	Unmodified	_YYFNWCSDIFY_					0	0	0		TMEM202|p.L195F|1|0.3|ENSG00000187806|chr15:72407181-72407181|C/T|missense_variant	TMEM202|p.L195F|1|0.3|ENSG00000187806|chr15:72407181-72407181|C/T|missense_variant	TMEM202|p.L195F|1|0.3|ENSG00000187806|chr15:72407181-72407181|C/T|missense_variant	MSMS	A375_MHC_IP_R2	2	507.4425354003906	3	507.544556	1519.61184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.35	1	56.101	55.601	56.601	0.75075								0	0	0	0.16331	1	20908	20908		0.50596	0	1				64834	29363	47225	47599	63214	63214					-0.1271830112796124
YYFPVKNVI	9	Unmodified	_YYFPVKNVI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3;SF3B3|p.R1164C|1|0.43|ENSG00000189091|chr16:70571176-70571176|C/T|missense_variant	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-SECPEP	A375_MHC_IP_R1	1	572.21533203125	2	571.815867	1141.61718	-0.1442	-8.2453E-05	-0.27832	-0.00015914	-0.42251	-0.0002416	571.815626772961	92.074	0.7579	92.074	91.706	92.463	0					27	14	3	0	0	0	0.10969	1	33859	33859		57.471	39.325	1	3504500			64835	8958	47226	47600	63215	63215					0.052037905167935605
YYFPVKNVI	9	Unmodified	_YYFPVKNVI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3;SF3B3|p.R1164C|1|0.43|ENSG00000189091|chr16:70571176-70571176|C/T|missense_variant	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MATCH	A375_MHC_IP_R2	2		2	571.815867	1141.61718	-0.17661	-0.00010099	0.11493	6.5718E-05	-0.061685	-3.5273E-05	571.8157788352188	91.345	0.40463	92.079	91.818	92.222	0.7345	0.0025118	0.00018193	NaN	57.471	19	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3752300			64836	8958	47226	47600							0.052037905167935605
YYFQEGWN	8	Unmodified	_YYFQEGWN_					0	0	0		nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;nc|ENSG00000196876|Q9UQD0-4|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000136531|Q99250-2|SCN2A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF;ENSG00000136531|ENST00000375437|SCN2A;SCN8A|p.P809S|2|0.39|ENSG00000196876|chr12:51762557-51762557|C/T|missense_variant;SCN2A|p.P815Q|1|0.06|ENSG00000136531|chr2:165342351-165342351|C/A|missense_variant;SCN2A|p.P815L|1|0.41|ENSG00000136531|chr2:165342351-165342351|C/T|missense_variant;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A;nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A	nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000153253|Q9NY46-4|SCN3A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	MULTI-MSMS	A375_MHC_IP_R1	1	1106.2235107421875	1	1106.45779	1105.45051	0.39204	0.00043378	-0.5355	-0.00059251	-0.14346	-0.00015873	1106.4556523188926	116.35	0.3054	116.35	116.24	116.55	0					6	5	2	0	0	0	0.77702	1	42749	42749		5.7604	0.52976	1	2999000			64837	14841;6022;5477	47227	47601	63216	63216					-0.09799682378888974
YYFVGLNLVPL	11	Unmodified	_YYFVGLNLVPL_					0	0	0			REV__ENST00000436966.1_1_1:226059699-226065338:-|nuORF	REV__ENST00000436966.1_1_1:226059699-226065338:-|nuORF	MULTI-MSMS	A375_MHC_IP_R1	1	649.45556640625	2	649.363182	1296.71181	0.01278	8.2986E-06	0.72856	0.0004731	0.74134	0.0004814	649.3637170340816	115.91	0.66034	115.91	115.58	116.24	0					19	12	2	0	0	0	0.43635	1	42515	42515		36.127	15.673	1	5245000	+		64838	23940	47228	47602	63217	63217					0.0753230426812479
YYFVGLNLVPL	11	Unmodified	_YYFVGLNLVPL_					0	0	0			REV__ENST00000436966.1_1_1:226059699-226065338:-|nuORF	REV__ENST00000436966.1_1_1:226059699-226065338:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	649.7635498046875	2	649.363182	1296.71181	0.01278	8.2986E-06	0.72856	0.0004731	0.74134	0.0004814	649.3637170340816	115.91	0.66034	115.91	115.58	116.24	0					19	12	2	0	0	0	0.72469	1	42533	42533		36.127	27.382	1	5245000	+		64839	23940	47228	47602	63218	63218					0.0753230426812479
YYFVGLNLVPL	11	Unmodified	_YYFVGLNLVPL_					0	0	0			REV__ENST00000436966.1_1_1:226059699-226065338:-|nuORF	REV__ENST00000436966.1_1_1:226059699-226065338:-|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	649.7630004882812	2	649.363182	1296.71181	-0.51582	-0.00033496	0.32642	0.00021196	-0.1894	-0.00012299	649.3633872142655	114.93	0.51189	115.62	115.42	115.93	0.68999					17	9	2	0	0	0	0.5062	1	43380	43380		30.637	19.837	1	3315000	+		64840	23940	47228	47602	63219	63219					0.0753230426812479
YYFVGLNLVPL	11	Unmodified	_YYFVGLNLVPL_					0	0	0			REV__ENST00000436966.1_1_1:226059699-226065338:-|nuORF	REV__ENST00000436966.1_1_1:226059699-226065338:-|nuORF	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	649.363182	1296.71181	-0.51582	-0.00033496	0.32642	0.00021196	-0.1894	-0.00012299	649.3633872142655	114.93	0.51189	115.62	115.42	115.93	0.68999	-0.14467	-0.00023336	NaN	36.127	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3315000	+		64841	23940	47228	47602							0.0753230426812479
YYGGETRY	8	Unmodified	_YYGGETRY_					0	0	0			REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	MSMS	A375_MHC_IP_R1	1	504.6432189941406	2	504.724707	1007.43486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.273	1	36.273	35.773	36.773	0								0	0	0	0.16876	1	12130	12130		10.183	2.2732	1		+		64842	19908	47229	47603	63220	63220					-0.06855968895956721
YYGPLRSV	8	Unmodified	_YYGPLRSV_					0	0	0		nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	MULTI-SECPEP	A375_MHC_IP_R1	1	478.1556396484375	2	477.75581	953.497067	-0.40485	-0.00019342	0.16706	7.9816E-05	-0.23779	-0.00011361	477.75583669664536	51.143	0.76109	51.143	50.764	51.525	0					39	14	4	0	0	0	0.46955	1	18094	18094		65.235	22.267	1	26307000			64843	3048	47230	47604	63221	63221					0.018458022430536403
YYGPLRSV	8	Unmodified	_YYGPLRSV_					0	0	0		nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	MULTI-SECPEP	A375_MHC_IP_R2	2	478.1552429199219	2	477.75581	953.497067	-0.72043	-0.00034419	0.28325	0.00013533	-0.43717	-0.00020886	477.7558839156614	50.294	0.86181	51.048	50.702	51.564	0.75406					46	16	4	0	0	0	0.42778	1	18871	18871		69.105	34.918	1	18001000			64844	3048	47230	47604	63222	63222					0.018458022430536403
YYGPLRTV	8	Unmodified	_YYGPLRTV_					0	0	0		nc|ENSG00000115875|Q16629-3|SRSF7;nc|ENSG00000115875|Q16629-2|SRSF7;nc|ENSG00000115875|Q16629-4|SRSF7;ENSG00000115875|ENST00000313117|SRSF7	nc|ENSG00000115875|Q16629-3|SRSF7	nc|ENSG00000115875|Q16629-3|SRSF7	MULTI-SECPEP	A375_MHC_IP_R1	1	485.16314697265625	2	484.763635	967.512717	-0.31167	-0.00015109	-0.19638	-9.5198E-05	-0.50805	-0.00024629	484.7633394658731	52.462	0.86142	52.462	52.085	52.946	0					42	16	4	0	0	0	0.10012	1	18620	18620		123.45	56.107	1	12460000			64845	3347	47231	47605	63223	63223					0.027660887600973183
YYGPLRTV	8	Unmodified	_YYGPLRTV_					0	0	0		nc|ENSG00000115875|Q16629-3|SRSF7;nc|ENSG00000115875|Q16629-2|SRSF7;nc|ENSG00000115875|Q16629-4|SRSF7;ENSG00000115875|ENST00000313117|SRSF7	nc|ENSG00000115875|Q16629-3|SRSF7	nc|ENSG00000115875|Q16629-3|SRSF7	MULTI-MSMS	A375_MHC_IP_R2	2	485.1629638671875	2	484.763635	967.512717	-0.8408	-0.00040759	-0.13797	-6.6881E-05	-0.97877	-0.00047447	484.76337955735954	51.651	0.76218	52.403	52.017	52.78	0.75225					38	14	4	0	0	0	0.012101	1	19402	19402		111.29	53.816	1	13520000			64846	3347	47231	47605	63224	63224					0.027660887600973183
YYHFYHSKTFK	11	Unmodified	_YYHFYHSKTFK_					0	0	0		nc|ENSG00000140479|P29122-5|PCSK6;nc|ENSG00000140479|P29122-4|PCSK6;nc|ENSG00000140479|P29122-2|PCSK6;nc|ENSG00000140479|P29122-8|PCSK6;ENSG00000140479|ENST00000611716|PCSK6;nc|ENSG00000140479|P29122-7|PCSK6;nc|ENSG00000140479|P29122-3|PCSK6	nc|ENSG00000140479|P29122-5|PCSK6	nc|ENSG00000140479|P29122-5|PCSK6	MSMS	A375_MHC_IP_R2	2	507.6467590332031	3	507.582221	1519.72483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.797	1	52.549	52.049	53.049	0.75225								0	0	0	0.16323	1	19505	19505		1.9275	0.021128	1				64847	5160	47232	47606	63225	63225					-0.01423864619800952
YYIDCIRQV	9	Unmodified	_YYIDCIRQV_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	A375_MHC_IP_R1	1	587.1928100585938	2	586.792066	1171.56958	-0.26408	-0.00015496	1.3499	0.00079212	1.0858	0.00063716	586.7928776954118	77.531	0.66019	77.531	77.235	77.895	0					19	12	2	0	0	0	0.41731	1	28244	28244		53.833	30.684	1	2549000			64848	7431	47233	47607	63226	63226					-0.00934231745713987
YYIDCIRQV	9	Unmodified	_YYIDCIRQV_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	A375_MHC_IP_R2	2	587.1914672851562	2	586.792066	1171.56958	-0.55524	-0.00032581	1.8946	0.0011117	1.3393	0.00078591	586.7927269303048	76.737	1.0658	77.478	76.994	78.059	0.74052					34	20	3	0	0	0	0.23313	1	29147	29147		53.833	23.608	1	2470200			64849	7431	47233	47607	63227	63227					-0.00934231745713987
YYIILRDVN	9	Unmodified	_YYIILRDVN_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	A375_MHC_IP_R2	2	584.3399658203125	2	584.821681	1167.62881	-0.87135	-0.00050959	0.228	0.00013334	-0.64335	-0.00037625	584.8220714848006	52.211	0.81106	52.964	52.729	53.54	0.75225					24	15	2	0	0	0	0.78353	1	19819	19819		9.3831	0	1	4617300			64850	3055	47234	47608	63228	63228					0.05169987540148213
YYINGKTGL	9	Unmodified	_YYINGKTGL_					0	0	0		ENSG00000115464|ENST00000398571|USP34;nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34	ENSG00000115464|ENST00000398571|USP34	ENSG00000115464|ENST00000398571|USP34	MULTI-SECPEP	A375_MHC_IP_R1	1	515.1739501953125	2	514.7742	1027.53385	-0.63972	-0.00032931	-0.20891	-0.00010754	-0.84863	-0.00043685	514.7741589054676	46.651	0.60656	46.651	46.345	46.952	0					26	11	3	0	0	0	0.036758	1	16365	16365		99.755	32.411	1	10604000			64851	3311	47235	47609	63229	63229					0.021180540689556437
YYINGKTGL	9	Unmodified	_YYINGKTGL_					0	0	0		ENSG00000115464|ENST00000398571|USP34;nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34	ENSG00000115464|ENST00000398571|USP34	ENSG00000115464|ENST00000398571|USP34	MULTI-SECPEP	A375_MHC_IP_R2	2	515.1732788085938	2	514.7742	1027.53385	-0.73049	-0.00037604	-0.18861	-9.709E-05	-0.9191	-0.00047313	514.7741629250394	45.884	0.603	46.649	46.303	46.906	0.76518					28	11	3	0	0	0	0.022401	1	17132	17132		99.755	32.411	1	13141000			64852	3311	47235	47609	63230	63230					0.021180540689556437
YYIRKPDREYY	11	Unmodified	_YYIRKPDREYY_					0	0	0			REV__ENSG00000100994|ENST00000216962|PYGB	REV__ENSG00000100994|ENST00000216962|PYGB	MSMS	A375_MHC_IP_R2	2	783.3932495117188	2	783.39099	1564.76743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.596	1	63.339	62.839	63.839	0.74263								0	0	0	0.16337	1	23726	23726		1.1933	0.84271	1		+		64853	17136	47236	47610	63231	63231					0.007634857178118182
YYIYWYLSEFL	11	Unmodified	_YYIYWYLSEFL_					0	0	0		ENSG00000135040|ENST00000361671|NAA35	ENSG00000135040|ENST00000361671|NAA35	ENSG00000135040|ENST00000361671|NAA35	MSMS	A375_MHC_IP_R1	1	520.6690673828125	3	520.58675	1558.73842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.152	1	65.152	64.652	65.652	0								0	0	0	0.16297	1	23583	23583		2.8433	0.21205	1				64854	4635	47237	47611	63232	63232					-0.018600516311835236
YYKIEYETI	9	Unmodified	_YYKIEYETI_					0	0	0			REV__nc|ENSG00000135333|Q15375-2|EPHA7	REV__nc|ENSG00000135333|Q15375-2|EPHA7	MULTI-MSMS	A375_MHC_IP_R2	2	611.7052612304688	2	611.305529	1220.59651	-0.49887	-0.00030496	0.78219	0.00047816	0.28332	0.0001732	611.3051491445616	76.347	0.66082	77.088	76.691	77.352	0.74052					23	12	3	0	0	0	0.11629	1	29009	29009		47.749	11.242	1	2467100	+		64855	18843	47238	47612	63233	63233					-0.004968446535258408
YYKIEYETI	9	Unmodified	_YYKIEYETI_					0	0	0			REV__nc|ENSG00000135333|Q15375-2|EPHA7	REV__nc|ENSG00000135333|Q15375-2|EPHA7	MULTI-MATCH	A375_MHC_IP_R1	1		2	611.305529	1220.59651	-0.38273	-0.00023396	0.66451	0.00040622	0.28178	0.00017225	612.308956587413	77.081	0.76087	77.081	76.776	77.537	0	-0.0033897	-8.9555E-05	NaN	47.749	38	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4626300	+		64856	18843	47238	47612							-0.004968446535258408
YYKIEYETI	9	Unmodified	_YYKIEYETI_					0	0	0			REV__nc|ENSG00000135333|Q15375-2|EPHA7	REV__nc|ENSG00000135333|Q15375-2|EPHA7	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	611.305529	1220.59651	-0.49887	-0.00030496	0.78219	0.00047816	0.28332	0.0001732	611.3051491445616	76.347	0.66082	77.088	76.691	77.352	0.74052	0.0033897	5.4329E-05	NaN	47.749	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2467100	+		64857	18843	47238	47612							-0.004968446535258408
YYKIIKNPMDL	11	Unmodified	_YYKIIKNPMDL_					0	0	0		nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	MULTI-MSMS	A375_MHC_IP_R1	1	699.8082275390625	2	699.378506	1396.74246	-0.8556	-0.00059839	-0.3219	-0.00022513	-1.1775	-0.00082352	699.3784402731557	132.36	0.60669	132.36	132.08	132.69	0					31	11	3	0	0	0	0.73647	1	51055	51055		2.7352	0.23671	1	12112000			64858	3809	47239	47613	63234	63234					0.0599571459085837
YYKKELREKWK	11	Unmodified	_YYKKELREKWK_					0	0	0			REV__nc|ENSG00000078795|Q9NZM6-2|PKD2L2	REV__nc|ENSG00000078795|Q9NZM6-2|PKD2L2	MSMS	A375_MHC_IP_R2	2	785.9322509765625	2	785.94065	1569.86675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.84	1	130.05	129.55	130.55	0.2142								0	0	0	0.16213	1	51029	51029		7.609	6.6467	1		+		64859	16718	47240	47614	63235	63235					0.10460928402540048
YYKKRSYESEF	11	Unmodified	_YYKKRSYESEF_					0	0	0			REV__nc|ENSG00000117114|O95490-3|ADGRL2	REV__nc|ENSG00000117114|O95490-3|ADGRL2	MSMS	A375_MHC_IP_R2	2	500.4747314453125	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.058189	1	0.52863	0.028631	1.0286	0.47044								0	0	0	0.1636	1	21	21		0	0	1		+		64860	17992	47241	47615	63236	63236					-0.020161959274901164
YYKKRSYESEF	11	Unmodified	_YYKKRSYESEF_					0	0	0			REV__nc|ENSG00000117114|O95490-3|ADGRL2	REV__nc|ENSG00000117114|O95490-3|ADGRL2	MSMS	A375_MHC_IP_R2	2	500.4750671386719	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.0928	1	1.5632	1.0632	2.0632	0.47044								0	0	0	0.1636	1	355	355		0	0	1		+		64861	17992	47241	47615	63237	63237					-0.020161959274901164
YYKKRSYESEF	11	Unmodified	_YYKKRSYESEF_					0	0	0			REV__nc|ENSG00000117114|O95490-3|ADGRL2	REV__nc|ENSG00000117114|O95490-3|ADGRL2	MSMS	A375_MHC_IP_R2	2	500.47430419921875	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.6053	1	2.0644	1.5644	2.5644	0.45901								0	0	0	0.1636	1	520	520		0	0	1		+		64862	17992	47241	47615	63238	63238					-0.020161959274901164
YYKKRSYESEF	11	Unmodified	_YYKKRSYESEF_					0	0	0			REV__nc|ENSG00000117114|O95490-3|ADGRL2	REV__nc|ENSG00000117114|O95490-3|ADGRL2	MSMS	A375_MHC_IP_R2	2	500.474853515625	3	500.577025	1498.70924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.1197	1	2.5788	2.0788	3.0788	0.45901								0	0	0	0.1636	1	684	684		0	0	1		+		64863	17992	47241	47615	63239	63239					-0.020161959274901164
YYKSADQRLVS	11	Unmodified	_YYKSADQRLVS_					0	0	0			REV__ENST00000554713.2_1_14:104381506-104387840:-|nuORF	REV__ENST00000554713.2_1_14:104381506-104387840:-|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	443.6794128417969	3	443.898098	1328.67246	-0.064205	-2.85E-05	0.18298	8.1223E-05	0.11877	5.2722E-05	443.8982182176477	57.58	0.30431	57.58	57.467	57.771	0					9	5	2	0	0	0	0.99681	1	20661	20661		4.4062	3.3926	1	1293000	+		64864	26084	47242	47616	63240	63240					0.021275522466112307
YYKYYKRLNEN	11	Unmodified	_YYKYYKRLNEN_					0	0	0			REV__tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1	REV__tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1	MSMS	A375_MHC_IP_R1	1	518.6346435546875	3	518.596419	1552.76743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.22	1	50.22	49.72	50.72	0								0	0	0	0.16342	1	17785	17785		0.92553	0.41958	1		+		64865	28712	47243	47617	63241	63241					0.01315485717827869
YYKYYKRLNEN	11	Unmodified	_YYKYYKRLNEN_					0	0	0			REV__tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1	REV__tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1	MSMS	A375_MHC_IP_R2	2	518.6885986328125	3	518.596419	1552.76743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.328	1	54.079	53.579	54.579	0.75105								0	0	0	0.1634	1	20121	20121		1.0136	0.50762	1		+		64866	28712	47243	47617	63242	63242					0.01315485717827869
YYLAQYFI	8	Unmodified	_YYLAQYFI_					0	0	0		ENST00000394205.7_2_4:141303286-141303394:+|nuORF	ENST00000394205.7_2_4:141303286-141303394:+|nuORF	ENST00000394205.7_2_4:141303286-141303394:+|nuORF	MULTI-MSMS	A375_MHC_IP_R2	2	1079.6378173828125	1	1080.54006	1079.53278	0.18297	0.0001977	-2.5374	-0.0027418	-2.3544	-0.0025441	1080.5378885474054	118.15	0.45616	118.76	118.59	119.05	0.60909					12	8	2	0	0	0	0.7758	1	44749	44749		10.183	1.5901	1	9737400			64867	11449	47244	47618	63243	63243					-0.0038016029996015277
YYLAQYFI	8	Unmodified	_YYLAQYFI_					0	0	0		ENST00000394205.7_2_4:141303286-141303394:+|nuORF	ENST00000394205.7_2_4:141303286-141303394:+|nuORF	ENST00000394205.7_2_4:141303286-141303394:+|nuORF	MULTI-MATCH	A375_MHC_IP_R1	1		1	1080.54006	1079.53278	0.11244	0.0001215	-3.4641	-0.003743	-3.3516	-0.0036215	1080.5372729770834	118.91	0.66011	118.91	118.47	119.13	0	0.076485	-0.00075445	NaN	10.183	14	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14720000			64868	11449	47244	47618							-0.0038016029996015277
YYLEKYLILFV	11	Unmodified	_YYLEKYLILFV_					0	0	0			REV__ENSG00000100129|ENST00000652021|EIF3L	REV__ENSG00000100129|ENST00000652021|EIF3L	MULTI-MSMS	A375_MHC_IP_R1	1	732.812255859375	2	732.412872	1462.81119	-0.7971	-0.00058381	0.42297	0.00030979	-0.37413	-0.00027402	732.4128122393504	132.67	0.96649	132.67	132.13	133.1	0					53	18	3	0	0	0	0.73698	1	51263	51263		4.897	3.5675	1	12305000	+		64869	17052	47245	47619	63244	63244					0.09829702162210197
YYLEKYLILFV	11	Unmodified	_YYLEKYLILFV_					0	0	0			REV__ENSG00000100129|ENST00000652021|EIF3L	REV__ENSG00000100129|ENST00000652021|EIF3L	MULTI-MSMS	A375_MHC_IP_R1	1	732.8119506835938	2	732.412872	1462.81119	-0.80933	-0.00059276	0.049444	3.6213E-05	-0.75988	-0.00055655	732.4125455282447	133.51	1.3216	133.51	133.05	134.37	0					78	25	5	0	0	0	0.73698	1	51496	51496		4.897	3.5675	1	26159000	+		64870	17052	47245	47619	63245	63245					0.09829702162210197
YYLEKYLILFV	11	Unmodified	_YYLEKYLILFV_					0	0	0			REV__ENSG00000100129|ENST00000652021|EIF3L	REV__ENSG00000100129|ENST00000652021|EIF3L	MULTI-MSMS	A375_MHC_IP_R2	2	732.8124389648438	2	732.412872	1462.81119	-0.73752	-0.00054017	0.011382	8.336E-06	-0.72614	-0.00053183	732.4125871450763	133.41	1.2197	133.57	133.09	134.31	0.16487					72	23	4	0	0	0	0.73698	1	52465	52465		4.897	2.3985	1	23955000	+		64871	17052	47245	47619	63246	63246					0.09829702162210197
YYLEKYLILFV	11	Unmodified	_YYLEKYLILFV_					0	0	0			REV__ENSG00000100129|ENST00000652021|EIF3L	REV__ENSG00000100129|ENST00000652021|EIF3L	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		2	732.412872	1462.81119	-0.73752	-0.00054017	0.011382	8.336E-06	-0.72614	-0.00053183	732.4125871450763	133.41	1.2197	133.57	133.09	134.31	0.16487	0.031497	-2.7145E-05	NaN	4.897	72	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23955000	+		64872	17052	47245	47619							0.09829702162210197
YYLISVQV	8	Unmodified	_YYLISVQV_					0	0	0			REV__ENST00000537276.5_1_12:123416657-123444319:-|nuORF	REV__ENST00000537276.5_1_12:123416657-123444319:-|nuORF	MSMS	A375_MHC_IP_R2	2	492.71630859375	2	492.773668	983.532783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.659	1	46.425	45.925	46.925	0.76519								0	0	0	0.16876	1	17075	17075		7.9102	1.187	1		+		64873	19733	47246	47620	63247	63247					0.040358397000545665
YYLIWALARI	10	Unmodified	_YYLIWALARI_					0	0	0		chr14:35294529-35307994|317|25.48|0.0|21.28|+|1|TE_info:MIR,MIR_dup134546,MIR,SINE,donor,+,35294443,35294529|None,PSMA6|3	chr14:35294529-35307994|317|25.48|0.0|21.28|+|1|TE_info:MIR,MIR_dup134546,MIR,SINE,donor,+,35294443,35294529|None,PSMA6|3	chr14:35294529-35307994|317|25.48|0.0|21.28|+|1|TE_info:MIR,MIR_dup134546,MIR,SINE,donor,+,35294443,35294529|None,PSMA6|3	MULTI-MSMS	A375_MHC_IP_R1	1	428.3163757324219	3	427.916653	1280.72813	-0.13284	-5.6845E-05	-0.053014	-2.2686E-05	-0.18586	-7.9531E-05	427.9166445597711	74.713	0.91374	74.713	74.298	75.211	0					35	17	4	0	0	0	0.64579	1	27180	27180		17.443	13.036	1	4661500			64874	433	47247	47621	63248	63248					0.09899430224891148
YYLIWALARI	10	Unmodified	_YYLIWALARI_					0	0	0		chr14:35294529-35307994|317|25.48|0.0|21.28|+|1|TE_info:MIR,MIR_dup134546,MIR,SINE,donor,+,35294443,35294529|None,PSMA6|3	chr14:35294529-35307994|317|25.48|0.0|21.28|+|1|TE_info:MIR,MIR_dup134546,MIR,SINE,donor,+,35294443,35294529|None,PSMA6|3	chr14:35294529-35307994|317|25.48|0.0|21.28|+|1|TE_info:MIR,MIR_dup134546,MIR,SINE,donor,+,35294443,35294529|None,PSMA6|3	MULTI-SECPEP	A375_MHC_IP_R2	2	428.3166809082031	3	427.916653	1280.72813	-0.16222	-6.9415E-05	-0.036356	-1.5557E-05	-0.19857	-8.4972E-05	427.91665217497496	73.724	0.61261	74.46	74.091	74.704	0.73541					29	11	4	0	0	0	0.53225	1	27971	27971		17.443	14.37	1	4604200			64875	433	47247	47621	63249	63249					0.09899430224891148
YYLLNNIVR	9	Unmodified	_YYLLNNIVR_					0	0	0			REV__ENSG00000243279|ENST00000553851|PRAF2	REV__ENSG00000243279|ENST00000553851|PRAF2	MULTI-MSMS	A375_MHC_IP_R1	1	390.9365234375	3	389.888874	1166.64479	0.38119	0.00014862	-0.37073	-0.00014454	0.01046	4.0782E-06	389.88877052298557	35.648	0.51228	35.648	35.369	35.881	0					26	9	4	0	0	0	0.64971	1	11840	11840		11.495	4.4576	1	3470500	+		64876	22807	47248	47622	63250	63250					0.06813693777030494
YYLNDLERI	9	Unmodified	_YYLNDLERI_					0	0	0		nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2;ENSG00000128266|ENST00000615612|GNAZ	nc|ENSG00000114353|P04899-6|GNAI2	nc|ENSG00000114353|P04899-6|GNAI2	MULTI-SECPEP	A375_MHC_IP_R1	1	600.2086791992188	2	599.808771	1197.60299	-0.57259	-0.00034345	0.45839	0.00027495	-0.1142	-6.8498E-05	599.8089880117341	86.546	0.55647	86.546	86.274	86.831	0					22	10	3	0	0	0	0.20451	1	31728	31728		49.554	24.155	1	3392800			64877	3213	47249	47623	63251	63251					0.01209093297848085
YYLNDLERI	9	Unmodified	_YYLNDLERI_					0	0	0		nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2;ENSG00000128266|ENST00000615612|GNAZ	nc|ENSG00000114353|P04899-6|GNAI2	nc|ENSG00000114353|P04899-6|GNAI2	MULTI-MATCH	A375_MHC_IP_R2	2		2	599.808771	1197.60299	-0.34423	-0.00020647	-0.51927	-0.00031146	-0.86349	-0.00051793	599.8085844921328	85.788	0.7111	86.524	86.137	86.848	0.73602	-0.011084	-0.00099749	NaN	49.554	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3121300			64878	3213	47249	47623							0.01209093297848085
YYMEWDFAGRM	11	Unmodified	_YYMEWDFAGRM_					0	0	0			REV__nc|ENSG00000174473|Q49A17-2|GALNTL6	REV__nc|ENSG00000174473|Q49A17-2|GALNTL6	MULTI-MSMS	A375_MHC_IP_R2	2	367.7934265136719	4	367.906062	1467.59514	-0.071315	-2.6237E-05	-0.20444	-7.5216E-05	-0.27576	-0.00010145	368.15605945189986	17.764	0.55946	18.36	18.095	18.655	0.59616					51	35	2	0	0	0	0.73934	1	5185	5185		0	0	1	265420	+		64879	27368	47250	47624	63252	63252					-0.11995125285602626
YYMEWDFAGRM	11	Unmodified	_YYMEWDFAGRM_					0	0	0			REV__nc|ENSG00000174473|Q49A17-2|GALNTL6	REV__nc|ENSG00000174473|Q49A17-2|GALNTL6	MULTI-SECPEP	A375_MHC_IP_R2	2	368.55596923828125	4	367.906062	1467.59514	-0.071315	-2.6237E-05	-0.20444	-7.5216E-05	-0.27576	-0.00010145	368.15605945189986	17.764	0.55946	18.36	18.095	18.655	0.59616					51	35	2	0	0	0	1.0015	1	5218	5218		0	0	1	265420	+		64880	27368	47250	47624	63253	63253					-0.11995125285602626
YYMKRDWNIFY	11	Unmodified	_YYMKRDWNIFY_					0	0	0			REV__ENST00000558906.5_1_15:50152393-50311102:-|nuORF	REV__ENST00000558906.5_1_15:50152393-50311102:-|nuORF	MSMS	A375_MHC_IP_R1	1	533.6713256835938	3	533.586867	1597.73877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.416	1	61.416	60.916	61.916	0								0	0	0	0.16336	1	22140	22140		1.2148	0	1		+		64881	17297	47251	47625	63254	63254					-0.036189551829920674
YYMLLRKY	8	Unmodified	_YYMLLRKY_					0	0	0			REV__tr|U7SUK2|U7SUK2_FUSNUDUF1353domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01199PE=4SV=1	REV__tr|U7SUK2|U7SUK2_FUSNUDUF1353domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01199PE=4SV=1	MULTI-SECPEP	A375_MHC_IP_R1	1	384.28643798828125	3	383.875689	1148.60524	0.23529	9.0323E-05	-0.91536	-0.00035139	-0.68007	-0.00026106	384.2086806473159	34.415	0.55579	34.415	34.203	34.759	0					14	10	2	0	0	0	0.972	1	11427	11427		8.7454	8.1186	1	1168700	+		64882	28563	47252	47626	63255	63255					0.036878505019785734
YYNKDNEEESL	11	Unmodified	_YYNKDNEEESL_					0	0	0		nc|ENSG00000122483|Q5T9S5-2|CCDC18;nc|ENSG00000122483|Q5T9S5|CCDC18;ENSG00000122483|ENST00000690025|CCDC18	nc|ENSG00000122483|Q5T9S5-2|CCDC18	nc|ENSG00000122483|Q5T9S5-2|CCDC18	MSMS	A375_MHC_IP_R1	1	702.298583984375	2	702.301704	1402.58885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.67	1	122.67	122.17	123.17	0								0	0	0	0.16179	1	45692	45692		9.3831	1.2276	1				64883	3783	47253	47627	63256	63256					-0.09633648711724163
YYNKEGRM	8	Unmodified	_YYNKEGRM_					0	0	0			REV__nc|ENSG00000198718|Q9Y4F4|TOGARAM1	REV__nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MSMS	A375_MHC_IP_R2	2	354.5673522949219	3	354.167531	1059.48076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.56	1	102.32	101.82	102.82	0.76428								0	0	0	0.16876	1	38494	38494		0.45834	0	1		+		64884	22401	47254	47628	63257	63257					-0.046596469853511735
YYNKEGRM	8	Unmodified	_YYNKEGRM_					0	0	0			REV__nc|ENSG00000198718|Q9Y4F4|TOGARAM1	REV__nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MSMS	A375_MHC_IP_R2	2	354.56768798828125	3	354.167531	1059.48076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.6	1	102.36	101.86	102.86	0.76428								0	0	0	0.16876	1	38508	38508		0.45834	0	1		+		64885	22401	47254	47628	63258	63258					-0.046596469853511735
YYPDFDEL	8	Unmodified	_YYPDFDEL_					0	0	0			REV__nc|ENSG00000196876|Q9UQD0-4|SCN8A	REV__nc|ENSG00000196876|Q9UQD0-4|SCN8A	MULTI-MSMS	A375_MHC_IP_R2	2	531.6267700195312	2	531.226748	1060.43894	-0.93988	-0.00049929	0.023501	1.2484E-05	-0.91638	-0.0004868	531.2267619506107	60.796	0.60849	61.541	61.16	61.769	0.74503					17	11	2	0	0	0	0.75322	1	23017	23017		19.439	3.5918	1	1956700	+		64886	22235	47255	47629	63259	63259					-0.088859241928958
YYPFREMIFKY	11	Unmodified	_YYPFREMIFKY_					0	0	0			REV__ENSG00000204612|ENST00000376708|FOXB2	REV__ENSG00000204612|ENST00000376708|FOXB2	MULTI-MSMS	A375_MHC_IP_R2	2	519.6358032226562	3	519.591729	1555.75336	-1.4936	-0.00077606	0.08913	4.6311E-05	-1.4045	-0.00072975	519.925955758504	29.34	0.30479	30.038	29.88	30.185	0.69872					7	5	2	0	0	0	0.7362	1	10294	10294		1.2148	0.20126	1	3195600	+		64887	22530	47256	47630	63260	63260					-0.0022888303483341588
YYQPREYQ	8	Unmodified	_YYQPREYQ_					0	0	0		ENST00000602101.6_1_19:15568751-15575169:-|nuORF	ENST00000602101.6_1_19:15568751-15575169:-|nuORF	ENST00000602101.6_1_19:15568751-15575169:-|nuORF	MSMS	A375_MHC_IP_R2	2	382.4825134277344	3	382.845334	1145.51417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.312	1	14.885	14.385	15.385	0.573								0	0	0	0.16876	1	4332	4332		0.45834	0.18932	1				64888	13876	47257	47631	63261	63261					-0.052763219418238805
YYRFWILPQLW	11	Unmodified	_YYRFWILPQLW_					0	0	0		nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	MSMS	A375_MHC_IP_R2	2	792.7200317382812	2	792.921729	1583.82891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.716	1	99.476	98.976	99.976	0.75977								0	0	0	0.16297	1	37447	37447		3.2813	1.7994	1				64889	2214	47258	47632	63262	63262					0.06034462207753677
YYRFWYPKWEM	11	Unmodified	_YYRFWYPKWEM_					0	0	0		nc|ENSG00000180481|Q4G1C9-5|GLIPR1L2;nc|ENSG00000180481|Q4G1C9-6|GLIPR1L2;ENSG00000180481|ENST00000550916|GLIPR1L2	nc|ENSG00000180481|Q4G1C9-5|GLIPR1L2	nc|ENSG00000180481|Q4G1C9-5|GLIPR1L2	MULTI-SECPEP	A375_MHC_IP_R1	1	556.4280395507812	3	556.927112	1667.75951	-0.58693	-0.00032688	0.22868	0.00012736	-0.35825	-0.00019952	557.2605398972555	87.514	0.50814	87.514	87.34	87.848	0					11	9	2	0	0	0	1.0005	1	32125	32125		1.1098	1.0149	1	1460000			64890	8300	47259	47633	63263	63263					-0.04766364803367651
YYRLLLVGIDE	11	Unmodified	_YYRLLLVGIDE_					0	0	0		ENST00000479285.5_1_1:114438325-114438811:-|nuORF;ENST00000462591.1_1_1:114438325-114438970:-|nuORF;ENSG00000134262|ENST00000369569|AP4B1	ENST00000479285.5_1_1:114438325-114438811:-|nuORF;ENSG00000134262|ENST00000369569|AP4B1	ENSG00000134262|ENST00000369569|AP4B1	MSMS	A375_MHC_IP_R2	2	677.77294921875	2	677.374278	1352.734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.688	1	12.186	11.686	12.686	0.49811								0	0	0	0.1636	1	3616	3616		0	0	1				64891	12471;4561	47260	47634	63264	63264					0.07174483945937027
YYRLQRQW	8	Unmodified	_YYRLQRQW_					0	0	0			REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6	MULTI-SECPEP	A375_MHC_IP_R2	2	404.9642028808594	3	404.880602	1211.61998	-0.21539	-8.7208E-05	-1.5921	-0.00064462	-1.8075	-0.00073183	404.8800591758655	35.169	0.45412	35.932	35.627	36.081	0.76338					11	8	2	0	0	0	0.972	1	12651	12651		10.824	8.3254	1	1337900	+		64892	17885	47261	47635	63265	63265					0.022630586943023445
YYRQPEIRKTN	11	Unmodified	_YYRQPEIRKTN_					0	0	0			REV__SNIP1|p.N341T|1|0.08|ENSG00000163877|chr1:37537917-37537917|T/G|missense_variant	REV__SNIP1|p.N341T|1|0.08|ENSG00000163877|chr1:37537917-37537917|T/G|missense_variant	MULTI-SECPEP	A375_MHC_IP_R1	1	367.610107421875	4	367.698029	1466.76301	0.30827	0.00011335	0.091854	3.3775E-05	0.40012	0.00014712	367.697923217253	20.16	0.5565	20.16	19.928	20.485	0					24	10	3	0	0	0	1.0004	1	5189	5189		2.6312	2.223	1	3544000	+		64893	28021	47262	47636	63266	63266					0.04830021294878861
YYRRHRIL	8	Unmodified	_YYRRHRIL_					0	0	0			REV__ZNF470|p.H391Y|1|0.46|ENSG00000197016|chr19:56577600-56577600|C/T|missense_variant	REV__ZNF470|p.H391Y|1|0.46|ENSG00000197016|chr19:56577600-56577600|C/T|missense_variant	MULTI-SECPEP	A375_MHC_IP_R2	2	392.6578369140625	3	392.896475	1175.66759	-0.59845	-0.00023513	-0.013218	-5.1933E-06	-0.61167	-0.00024032	393.23111112745016	59.274	0.40469	60.021	59.793	60.198	0.74714					11	7	2	0	0	0	0.972	1	22483	22483		7.2892	3.4129	1	1142400	+		64894	22245	47263	47637	63267	63267					0.08678757685174787
YYRSGEVLY	9	Unmodified	_YYRSGEVLY_					0	0	0		nc|ENSG00000231924|P11464-2|PSG1;nc|ENSG00000231924|P11464-4|PSG1;ENSG00000124467|ENST00000306511|PSG8;nc|ENSG00000124467|Q9UQ74-3|PSG8;ENSG00000231924|ENST00000436291|PSG1;nc|ENSG00000231924|P11464-3|PSG1;nc|ENSG00000124467|Q9UQ74-2|PSG8	nc|ENSG00000231924|P11464-2|PSG1	nc|ENSG00000231924|P11464-2|PSG1	MULTI-SECPEP	A375_MHC_IP_R1	1	383.9695739746094	3	383.857351	1148.55022	0.38057	0.00014608	-0.36435	-0.00013986	0.016222	6.227E-06	383.85703691735836	51.173	0.25332	51.173	51.017	51.27	0					6	4	2	0	0	0	0.80005	1	18191	18191		2.7352	1.7729	1	615920			64895	3902	47264	47638	63268	63268					-0.018108647649341947
YYSENLCPD	9	Unmodified	_YYSENLCPD_					0	0	0		L1MA1_dup2411|chrX:76191796-76193207:-|1.4180499830709992|0.4902543273978149|1.53|471.0|70|1|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.4180499830709992|0.4902543273978149|1.53|471.0|70|1|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.4180499830709992|0.4902543273978149|1.53|471.0|70|1|anti-sense	MULTI-MSMS	A375_MHC_IP_R1	1	368.8834533691406	3	368.483185	1102.42773	0.33019	0.00012167	0.71054	0.00026182	1.0407	0.00038349	368.4834384938356	47.524	0.55751	47.524	47.211	47.768	0					24	10	3	0	0	0	0.51106	1	16702	16702		13.615	4.6386	1	5404200			64896	14252	47265	47639	63269	63269					-0.11939069558661686
YYSENLCPD	9	Unmodified	_YYSENLCPD_					0	0	0		L1MA1_dup2411|chrX:76191796-76193207:-|1.4180499830709992|0.4902543273978149|1.53|471.0|70|1|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.4180499830709992|0.4902543273978149|1.53|471.0|70|1|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.4180499830709992|0.4902543273978149|1.53|471.0|70|1|anti-sense	MULTI-MATCH-MSMS	A375_MHC_IP_R2	2		3	368.483185	1102.42773	0.41634	0.00015342	0.492	0.00018129	0.90835	0.00033471	368.4834128688013	46.85	0.60937	47.611	47.309	47.919	0.76127	0.043241	-0.00012785	NaN	13.615	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4520500			64897	14252	47265	47639							-0.11939069558661686
YYSGFTEH	8	Unmodified	_YYSGFTEH_					0	0	0		ENSG00000075407|ENST00000685332|ZNF37A	ENSG00000075407|ENST00000685332|ZNF37A	ENSG00000075407|ENST00000685332|ZNF37A	MULTI-MSMS	A375_MHC_IP_R2	2	1004.8994140625	1	1003.41559	1002.40831	0.050812	5.0986E-05	1.1535	0.0011575	1.2044	0.0012085	1003.417348909271	120.11	0.91248	120.64	120.19	121.1	0.5321					18	17	2	0	0	0	0.77686	1	45850	45850		6.3541	0	1	44499000			64898	1608	47266	47640	63270	63270					-0.09279657787271844
YYSKPFVTF	9	Unmodified	_YYSKPFVTF_					0	0	0		ENST00000494860.5_1_11:112064591-112085724:+|nuORF;nc|ENSG00000197580|Q9BYV7-6|BCO2;nc|ENSG00000197580|Q9BYV7-5|BCO2;nc|ENSG00000197580|Q9BYV7-4|BCO2;nc|ENSG00000197580|Q9BYV7-2|BCO2;ENSG00000197580|ENST00000357685|BCO2	ENST00000494860.5_1_11:112064591-112085724:+|nuORF	ENST00000494860.5_1_11:112064591-112085724:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R1	1	383.9695739746094	3	384.530576	1150.5699	0.36669	0.00014101	3.5084	0.0013491	3.8751	0.0014901	384.53293245340853	51.185	0.50917	51.185	50.915	51.424	0					23	9	3	0	0	0	0.79683	1	18191	18191		2.9952	0	1	1927800			64899	9173	47267	47641	63271	63271					0.0006351124582124612
YYSPHGHIL	9	Unmodified	_YYSPHGHIL_					0	0	0		nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	MULTI-SECPEP	A375_MHC_IP_R1	1	363.2502746582031	3	362.85042	1085.52943	-0.032583	-1.1823E-05	0.011347	4.1172E-06	-0.021236	-7.7055E-06	362.8502904887045	36.463	0.56002	36.463	36.084	36.644	0					15	10	2	0	0	0	0.28418	1	12221	12221		34.402	19.153	1	3667200			64900	5527	47268	47642	63272	63272					-0.009914103539585994
YYSPHGHIL	9	Unmodified	_YYSPHGHIL_					0	0	0		nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	MULTI-SECPEP	A375_MHC_IP_R2	2	363.2503356933594	3	362.85042	1085.52943	-0.32689	-0.00011861	-0.22179	-8.0476E-05	-0.54868	-0.00019909	362.85037590781263	35.545	0.45616	36.308	36.081	36.537	0.76338					20	8	3	0	0	0	0.53495	1	12914	12914		13.906	9.3772	1	1933100			64901	5527	47268	47642	63273	63273					-0.009914103539585994
YYSQDDNC	8	Unmodified	_YYSQDDNC_					0	0	0		nc|ENSG00000094975|Q9UBS9-2|SUCO;ENSG00000094975|ENST00000263688|SUCO;ENST00000608566.1_1_1:172502539-172520775:+|nuORF	nc|ENSG00000094975|Q9UBS9-2|SUCO	nc|ENSG00000094975|Q9UBS9-2|SUCO	MULTI-SECPEP	A375_MHC_IP_R1	1	504.6432189941406	2	504.174189	1006.33383	-0.38572	-0.00019447	-1.3175	-0.00066423	-1.7032	-0.0008587	504.1738485415224	36.173	0.35527	36.173	35.932	36.287	0					10	6	2	0	0	0	0.972	1	12130	12130		2.8892	2.0956	1	733370			64902	2031	47269	47643	63274	63274					-0.16908788660964547
YYSQPRSY	8	Unmodified	_YYSQPRSY_					0	0	0		ENSG00000284526|ENST00000640006|unknown	ENSG00000284526|ENST00000640006|unknown	ENSG00000284526|ENST00000640006|unknown	MULTI-MSMS	A375_MHC_IP_R1	1	533.2265625	2	532.245806	1062.47706	-0.68375	-0.00036392	-0.18746	-9.9774E-05	-0.87121	-0.0004637	532.2458565858879	58.909	0.86485	58.909	58.481	59.346	0					41	16	4	0	0	0	0.77488	1	21096	21096		13.508	1.8676	1	22356000			64903	10055	47270	47644	63275	63275					-0.05167993487566491
YYTCLYSI	8	Unmodified	_YYTCLYSI_					0	0	0			REV__nc|ENSG00000073150|Q96RD6-2|PANX2	REV__nc|ENSG00000073150|Q96RD6-2|PANX2	MULTI-SECPEP	A375_MHC_IP_R2	2	513.115966796875	2	513.236061	1024.45757	-1.1509	-0.00059066	3.4078	0.001749	2.257	0.0011584	513.7397223205944	59.114	0.40664	59.861	59.54	59.946	0.74714					9	7	2	0	0	0	0.94479	1	22301	22301		13.508	0.97634	1	670660	+		64904	16617	47271	47645	63276	63276					-0.05368085822692592
YYTLAVPM	8	Unmodified	_YYTLAVPM_					0	0	0		ENST00000416764.5_1_3:185686359-185693154:+|nuORF;ENST00000306399.3_1_3:185686359-185697623:+|nuORF	ENST00000416764.5_1_3:185686359-185693154:+|nuORF	ENST00000416764.5_1_3:185686359-185693154:+|nuORF	MULTI-SECPEP	A375_MHC_IP_R2	2	958.253173828125	1	957.475017	956.46774	-0.13059	-0.00012504	-0.77709	-0.00074404	-0.90768	-0.00086908	957.4708603433725	122.62	0.14996	123	122.92	123.07	0.3766					4	2	2	0	0	0	0.96296	1	47008	47008		10.183	7.8807	1	15063000			64905	10577	47272	47646	63277	63277					-0.012234780974495152
YYTRTTMCY	9	Unmodified	_YYTRTTMCY_					0	0	0			REV__ENSG00000180155|ENST00000652477|LYNX1	REV__ENSG00000180155|ENST00000652477|LYNX1	MULTI-SECPEP	A375_MHC_IP_R2	2	1201.7001953125	1	1201.50164	1200.49437	0.27901	0.00033523	0.3713	0.00044612	0.65031	0.00078135	1201.5013657272725	118.74	0.40388	119.35	119.05	119.45	0.60909					10	7	2	0	0	0	0.77834	1	44977	44977		8.5933	0	1	38053000	+		64906	21598	47273	47647	63278	63278					-0.09786157268422357
YYTSRERWSM	10	Unmodified	_YYTSRERWSM_					0	0	0			REV__GAGE12J|p.G5E|1|0.09|ENSG00000224659|chrX:49323207-49323207|G/A|missense_variant	REV__GAGE12J|p.G5E|1|0.09|ENSG00000224659|chrX:49323207-49323207|G/A|missense_variant	MSMS	A375_MHC_IP_R2	2	689.8134155273438	2	689.814061	1377.61357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.87	1	139.93	139.43	140.43	0.059906								0	0	0	0.15541	1	54776	54776		3.2813	0.28607	1		+		64907	26663	47274	47648	63279	63279					-0.060132473193561964
YYTYDMLE	8	Unmodified	_YYTYDMLE_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	A375_MHC_IP_R1	1	1098.39453125	1	1097.44959	1096.44231	0.34502	0.00037864	2.8976	0.00318	3.2426	0.0035586	1098.4566213338574	116.98	0.30568	116.98	116.85	117.16	0					6	5	2	0	0	0	0.7758	1	42993	42993		10.183	0	1	5939400	+		64908	19778	47275	47649	63280	63280					-0.10204997410551186
YYVVQARILS	10	Unmodified	_YYVVQARILS_					0	0	0			REV__nc|ENSG00000147439|Q9NQY0-2|BIN3	REV__nc|ENSG00000147439|Q9NQY0-2|BIN3	MULTI-MSMS	A375_MHC_IP_R1	1	404.96417236328125	3	404.564279	1210.67101	-0.24276	-9.821E-05	0.075881	3.0699E-05	-0.16687	-6.7511E-05	404.5643435882081	35.789	0.46	35.789	35.522	35.982	0					18	8	3	0	0	0	0.66857	1	11967	11967		15.739	2.8827	1	3266900	+		64909	19586	47276	47650	63281	63281					0.07409962948531756
YYVVQARILS	10	Unmodified	_YYVVQARILS_					0	0	0			REV__nc|ENSG00000147439|Q9NQY0-2|BIN3	REV__nc|ENSG00000147439|Q9NQY0-2|BIN3	MULTI-MATCH-MSMS	A375_MHC_IP_R1	1		3	404.564279	1210.67101	-0.24276	-9.821E-05	0.075881	3.0699E-05	-0.16687	-6.7511E-05	404.5643435882081	35.789	0.46	35.789	35.522	35.982	0	0.059629	-4.238E-05	NaN	15.739	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3266900	+		64910	19586	47276	47650							0.07409962948531756
YYWWFFQTVPG	11	Unmodified	_YYWWFFQTVPG_					0	0	0		ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENSG00000137857|ENST00000389037|DUOX1	ENST00000561220.6_1_15:45434150-45457096:+|nuORF	ENST00000561220.6_1_15:45434150-45457096:+|nuORF	MSMS	A375_MHC_IP_R2	2	498.6503601074219	3	498.567801	1492.68157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.987	1	26.647	26.147	27.147	0.65992								0	0	0	0.16249	1	8742	8742		2.6312	0.19645	1				64911	4930	47277	47651	63282	63282					-0.04506054397074877
YYYINLEKYKK	11	Unmodified	_YYYINLEKYKK_					0	0	0			REV__tr|U7SSY7|U7SSY7_FUSNUHeptose(II)phosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01643PE=4SV=1	REV__tr|U7SSY7|U7SSY7_FUSNUHeptose(II)phosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01643PE=4SV=1	MSMS	A375_MHC_IP_R1	1	762.90966796875	2	762.908485	1523.80242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.935	1	40.935	40.435	41.435	0								0	0	0	0.16353	1	14103	14103		0.35063	0.081612	1		+		64912	28451	47278	47652	63283	63283					0.061467285257322146
YYYKRREEYFR	11	Unmodified	_YYYKRREEYFR_					0	0	0			REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	MSMS	A375_MHC_IP_R1	1	836.8861694335938	2	836.915164	1671.81578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.94	1	120.94	120.44	121.44	0								0	0	0	0.16307	1	44861	44861		2.7352	2.4662	1		+		64913	28270	47279	47653	63284	63284					0.006739793577253295
YYYLKLRKEKF	11	Unmodified	_YYYLKLRKEKF_					0	0	0		tr|U7SXY6|U7SXY6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00926PE=4SV=1	tr|U7SXY6|U7SXY6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00926PE=4SV=1	tr|U7SXY6|U7SXY6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00926PE=4SV=1	MSMS	A375_MHC_IP_R2	2	517.6832275390625	3	517.629172	1549.86569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.137	1	79.881	79.381	80.381	0.74474								0	0	0	0.1635	1	30031	30031		0.50596	0.051438	1				64914	29834	47280	47654	63285	63285					0.1127471403360687
YYYPDSSI	8	Unmodified	_YYYPDSSI_					0	0	0		nc|ENSG00000116299|Q6UXG2-3|ELAPOR1;nc|ENSG00000116299|Q6UXG2-2|ELAPOR1;nc|ENSG00000116299|Q6UXG2-4|ELAPOR1;ENSG00000116299|ENST00000369939|ELAPOR1;ENST00000490758.6_1_1:109656894-109730836:+|nuORF;ENST00000527996.5_1_1:109656894-109745573:+|nuORF	nc|ENSG00000116299|Q6UXG2-3|ELAPOR1	nc|ENSG00000116299|Q6UXG2-3|ELAPOR1	MULTI-MSMS	A375_MHC_IP_R2	2	504.6427307128906	2	504.221465	1006.42838	-0.88024	-0.00044384	-0.35769	-0.00018036	-1.2379	-0.00062419	504.2213026160937	35.595	0.35444	36.358	36.183	36.537	0.76338					10	6	2	0	0	0	0.77488	2	12903	12881;12903		13.508	0	1	841980			64915	3394	47281	47655	63286;63287	63287					-0.07457906847332652
YYYTEIRRV	9	Unmodified	_YYYTEIRRV_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11;ENST00000509857.5_1_4:184585182-184595983:+|nuORF	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	MULTI-MSMS	A375_MHC_IP_R1	1	421.9560241699219	3	421.555784	1261.64552	0.12788	5.3907E-05	-0.64006	-0.00026982	-0.51218	-0.00021591	421.55570177353616	40.617	0.80849	40.617	40.406	41.215	0					26	15	3	0	0	0	0.46357	1	13969	13969		21.59	9.9588	1	9283100			64916	7316	47282	47656	63288	63288					0.02516488426090291
YYYTEIRRV	9	Unmodified	_YYYTEIRRV_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11;ENST00000509857.5_1_4:184585182-184595983:+|nuORF	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	MULTI-MSMS	A375_MHC_IP_R2	2	421.3097229003906	3	421.555784	1261.64552	-0.15643	-6.5946E-05	-0.046102	-1.9435E-05	-0.20254	-8.538E-05	421.55573284349987	39.876	0.55873	40.651	40.371	40.93	0.77451					16	10	2	0	0	0	0.6343	1	14700	14700		12.873	3.1084	1	8213600			64917	7316	47282	47656	63289	63289					0.02516488426090291